BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase
RecG [Candidatus Liberibacter asiaticus str. psy62]
         (700 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040622|gb|ACT57418.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 1429 bits (3699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 700/700 (100%), Positives = 700/700 (100%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK
Sbjct: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG
Sbjct: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS
Sbjct: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL
Sbjct: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG
Sbjct: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP
Sbjct: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA
Sbjct: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS
Sbjct: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG
Sbjct: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
           TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL
Sbjct: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR
Sbjct: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG
Sbjct: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700


>gi|315122358|ref|YP_004062847.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495760|gb|ADR52359.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 700

 Score = 1183 bits (3061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/700 (81%), Positives = 642/700 (91%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPS LNPLFAPLS+ RGVG+K  L  SKII+ GNANE+RFIDLLFY+PSSFIDR Y PK
Sbjct: 1   MRPSLLNPLFAPLSSLRGVGEKNVLLFSKIIDFGNANESRFIDLLFYYPSSFIDRRYHPK 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           ISEISEER+VTITG+I+   S +  K+ PY+ILLNDGTGEI+LLFF++KTE LKN+FF+G
Sbjct: 61  ISEISEERVVTITGHIASLPSVRSPKKIPYQILLNDGTGEISLLFFHKKTEWLKNIFFKG 120

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           RKITVTG+IKK KNR+ M+HPHY F++SQDV  PLIE +YSLPTGLS D FKKI+ EALS
Sbjct: 121 RKITVTGQIKKFKNRLTMIHPHYFFYDSQDVILPLIEPIYSLPTGLSADFFKKIVDEALS 180

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           RLP LPEW+E DLLQ+KSFPS+ EAF IIHNPR  KDFEWTSPARERLAYDE LAGQIAL
Sbjct: 181 RLPTLPEWLENDLLQEKSFPSMKEAFKIIHNPRDVKDFEWTSPARERLAYDEFLAGQIAL 240

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           LL+RK+FK+E+GIPI VEGKIAQKI++++PFSPTKSQ  AI+DILQDMSQKNRMLRILQG
Sbjct: 241 LLVRKKFKEELGIPIQVEGKIAQKIVQSLPFSPTKSQNLAIRDILQDMSQKNRMLRILQG 300

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVALIAMA AVEAGGQAVIMAPIGILAQQHYEFIKKYTQ++QI +EIITGNMP
Sbjct: 301 DVGSGKTLVALIAMATAVEAGGQAVIMAPIGILAQQHYEFIKKYTQDSQIGIEIITGNMP 360

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           ++ R+ AL+RIA+GQA IIIGTHALFQDSIQY+KLIL++VDEQHRFGVQQRLKLTQK  +
Sbjct: 361 KSQRKIALKRIANGQAQIIIGTHALFQDSIQYHKLILIVVDEQHRFGVQQRLKLTQKGNS 420

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PHVLLMTATPIPRTL+LT+ GDI++SKITEKPAGRKPIKTVIIPI+RI+EV+ERLKVV+S
Sbjct: 421 PHVLLMTATPIPRTLILTAFGDINVSKITEKPAGRKPIKTVIIPISRINEVVERLKVVVS 480

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           E KKAYWICPQIEEK+ES+F SV+ERF SL E F S IAIIHGRMSD DKES+M+SFKNG
Sbjct: 481 ENKKAYWICPQIEEKEESHFCSVIERFKSLQEQFGSDIAIIHGRMSDTDKESIMNSFKNG 540

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
           T KLLIATTVIEVG+DV+DASIIIIE+AEHFGLAQLHQLRGRVGRGEE+SSCILLYHPPL
Sbjct: 541 TYKLLIATTVIEVGVDVIDASIIIIEHAEHFGLAQLHQLRGRVGRGEEVSSCILLYHPPL 600

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+ SYTRLS+L+NTEDGFLIAEEDLKQR EGEILGIKQSGMPKFLIAQPELH +LLEIAR
Sbjct: 601 SRVSYTRLSILRNTEDGFLIAEEDLKQRGEGEILGIKQSGMPKFLIAQPELHSTLLEIAR 660

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           KDA +I+ QDP+LTSVRG+S+RILLYLY+YNEAFQFI+AG
Sbjct: 661 KDAINIIKQDPNLTSVRGRSLRILLYLYRYNEAFQFIKAG 700


>gi|222085971|ref|YP_002544503.1| ATP-dependent DNA helicase RecG [Agrobacterium radiobacter K84]
 gi|221723419|gb|ACM26575.1| ATP-dependent DNA helicase RecG [Agrobacterium radiobacter K84]
          Length = 701

 Score =  789 bits (2037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/701 (53%), Positives = 508/701 (72%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLFA +S+  GVG K +  L K+++    ++ R +DLLF+ P S IDR  +P 
Sbjct: 1   MRPAILDPLFASISSLPGVGPKVAELLVKLLDRETIDDCRVVDLLFHAPHSIIDRREQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTITG + +H      +   PY++ L+D TGE+ L+FF  K + L+     
Sbjct: 61  IARAPQGAIVTITGRVDRHQPPPNPRSNVPYRVFLHDETGELGLVFFRGKAQWLEKQLPI 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
              +TV+GK+     R  MVHP YI   S+  N PL+E VY L  GL++   +K +  AL
Sbjct: 121 DETVTVSGKVDWFNGRPSMVHPDYIMRESEAQNLPLVEPVYPLTAGLALKFLRKTVEAAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +RLP LPEW ++ L QK+ FPSI+++F+++H P  A D +  +PAR RLAYDE LAGQ++
Sbjct: 181 ARLPQLPEWDDEALAQKQGFPSISDSFHMLHAPLDAADIDPQAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G P++  G I++KIL ++PFS T SQ +AI DIL+DM+  +RMLR+LQ
Sbjct: 241 LALVRQRLRKVAGQPVHPTGDISRKILESLPFSLTNSQTAAIADILKDMAGTDRMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKTLVAL+A+AA +E+GGQAV+MAP  ILA+QHY  I K+  +  + VE++TG  
Sbjct: 301 GDVGAGKTLVALMAIAAVIESGGQAVLMAPTEILARQHYATIAKFAASANLSVEVLTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   LERIA G+A I+IGTHALFQDS+ Y  L+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGRERDAILERIASGEAQIVIGTHALFQDSVSYANLMLAVVDEQHRFGVHQRLRLTAKGI 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+T+ +P  R  +++ RLK  L
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTITVPTERTGDIVSRLKSAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           SEGKKAYWICP +EE +ES+  SV ER  +L +     I +IHGRMS  +K++VM +FKN
Sbjct: 481 SEGKKAYWICPLVEESEESDLMSVEERHATLVKALGPGIGLIHGRMSGPEKDAVMMAFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GEIRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L +  + RLS++++TEDGF IAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 601 LGETGHARLSIMRDTEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DPDLT  RG ++R LLYL++ +EA +F+RAG
Sbjct: 661 RKDAAYLIDRDPDLTGERGMAVRTLLYLFRRDEAIRFLRAG 701


>gi|325293166|ref|YP_004279030.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3]
 gi|325061019|gb|ADY64710.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3]
          Length = 704

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/701 (54%), Positives = 506/701 (72%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLFA +ST  GVG K +  L+K+++  NA++TR IDLLF+ PS+ IDR  RP 
Sbjct: 4   MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRENADDTRVIDLLFHAPSNVIDRRNRPG 63

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+  +   IVTI G + +H       R  PY++ L+D TGE+ L FF  K + L      
Sbjct: 64  IALAAPGAIVTIQGRVDRHQPAPPGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPV 123

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++ V+GK+     R  MVHP ++   S+  N PL+EAVY +  GLS  + ++ I   L
Sbjct: 124 DEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAVYPMTAGLSPKVLRRAIEGGL 183

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           S+LPV PEWI++ L  ++ F  +A +F  +H+PR + D +  +PAR RLAYDE LAGQ++
Sbjct: 184 SKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS 243

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G PI  +G IA KIL  +PFS T SQ +++KDIL DM+ ++RMLR+LQ
Sbjct: 244 LALVRQRLRKVAGQPIRAKGDIAAKILSQLPFSLTPSQNASVKDILTDMASEDRMLRLLQ 303

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKTLVAL+AMA AVEAGGQAV+MAP  ILA+QH+  I K      I VE++TG  
Sbjct: 304 GDVGAGKTLVALMAMATAVEAGGQAVLMAPTEILARQHFATISKLANAAGITVEVLTGRT 363

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+  ER+A G+A I+IGTHALFQDS+ Y  L+L +VDEQHRFGV QRL+LT K  
Sbjct: 364 KGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAVVDEQHRFGVHQRLRLTAKGI 423

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+TV IP  RI +++ERL+  L
Sbjct: 424 TPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL 483

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            EGKKAYWICP +EE +ES+  S  ER   L +   ++I +IHGRMS  +K++ M +FKN
Sbjct: 484 KEGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMSGPEKDAAMLAFKN 543

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 544 GGTRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 603

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+N   RLS+L+++EDGFLIAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 604 LSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 663

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DP+LT  RG+S+R LLYL++ +EA +F+ AG
Sbjct: 664 RKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG 704


>gi|159184915|ref|NP_354765.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58]
 gi|159140194|gb|AAK87550.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 701

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/701 (53%), Positives = 506/701 (72%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLFA +ST  GVG K +  L+K+++  +A++TR IDLLF+ PS+ IDR  RP 
Sbjct: 1   MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRESADDTRVIDLLFHAPSNVIDRRNRPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+  +   IVTI G + +H       R  PY++ L+D TGE+ L FF  K + L      
Sbjct: 61  IALAAPGAIVTIQGRVDRHQPPPAGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPV 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++ V+GK+     R  MVHP ++   S+  N PL+EAVY +  GLS  + ++ I   L
Sbjct: 121 DEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAVYPMTAGLSPKVLRRAIEGGL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           S+LPV PEWI++ L  ++ F  +A +F  +H+PR + D +  +PAR RLAYDE LAGQ++
Sbjct: 181 SKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G PI   G IA KIL  +PFS T SQ +A+KDIL DM+ ++RMLR+LQ
Sbjct: 241 LALVRQRLRKVAGQPIRARGDIAAKILSQLPFSLTASQSAAVKDILTDMAGEDRMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKTLVAL+AMA AVEAGGQAV+MAP  ILA+QH+  I K  +   + VE++TG  
Sbjct: 301 GDVGAGKTLVALMAMATAVEAGGQAVLMAPTEILARQHFATISKLAKAVGLTVEVLTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+  ER+A G+A I+IGTHALFQDS+ Y  L+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAVVDEQHRFGVHQRLRLTAKGI 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+TV IP  RI +++ERL+  L
Sbjct: 421 TPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +GKKAYWICP +EE +ES+  S  ER   L +   ++I +IHGRM+  +K++ M +FK+
Sbjct: 481 KDGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMNGPEKDAAMLAFKS 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+N   RLS+L+++EDGFLIAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 601 LSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DP+LT  RG+S+R LLYL++ +EA +F+ AG
Sbjct: 661 RKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG 701


>gi|327188304|gb|EGE55523.1| ATP-dependent DNA helicase protein [Rhizobium etli CNPAF512]
          Length = 701

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/701 (53%), Positives = 496/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K++      + R IDLLF+ P S IDR  +P 
Sbjct: 1   MRPAILDPLFSPISGLPGVGPKIAELLVKLLGREAPEDCRVIDLLFHAPFSLIDRRNQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 61  IARAPQGAIVTITARVDRHQVPPRGKSNVPYRVFLHDDTGELTLVFFRGQAAWLEKQLPI 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GK+     R  MVHP YI    +  N PL+E +Y L  GLS    +KII  AL
Sbjct: 121 DAEVTVSGKVDWFNGRASMVHPDYIVRADEAENLPLVEPIYPLTAGLSPKTLRKIIDAAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            R P LPEWI+  L QK+  PSI ++F+++H PR   D +  +PAR RLAYDE LAGQ++
Sbjct: 181 PRFPELPEWIDPALAQKQGLPSIRDSFHMLHEPRDPSDIDPQAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G P+   G ++ KIL+ +PFSPT SQ  AI DIL+DM+   RMLR+LQ
Sbjct: 241 LSLVRQRLRKVAGQPVLATGAVSGKILKTLPFSPTSSQNEAIADILKDMAGTERMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVALI+MAA +E+GGQAV+MAP  ILA+QH+  I K+  +  + +E++TG  
Sbjct: 301 GDVGSGKTLVALISMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + LERIA G A I+IGTHALFQDS+ Y KL+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGREREEILERIASGAAQIVIGTHALFQDSVTYDKLMLAVVDEQHRFGVHQRLRLTAKGI 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+T+ +P+ R  E++ RL+  L
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTITVPMERTGEIVGRLQSAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +EGKKAYWICP +EE +E +  S  ER  +L       I +IHGRMS  +K++ M +FKN
Sbjct: 481 AEGKKAYWICPLVEESEELDLMSAEERHATLVAALGPDIGLIHGRMSGPEKDAAMMAFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L +  + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R DA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+RAG
Sbjct: 661 RNDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFLRAG 701


>gi|190891737|ref|YP_001978279.1| ATP-dependent DNA helicase [Rhizobium etli CIAT 652]
 gi|190697016|gb|ACE91101.1| ATP-dependent DNA helicase protein [Rhizobium etli CIAT 652]
          Length = 701

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/701 (53%), Positives = 497/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K++      + R IDLLF+ P + IDR  +P 
Sbjct: 1   MRPAILDPLFSPISGLPGVGPKIAELLVKLLGRETPEDCRVIDLLFHAPFALIDRRNQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 61  IARAPQGAIVTITARVDRHQVPPRGKSNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPI 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GK+     R  MVHP YI    +  N PL+E +Y L  GLS    +KII  AL
Sbjct: 121 DAEVTVSGKVDWFNGRASMVHPDYIVRAEEAENLPLVEPIYPLTAGLSPKTLRKIIDAAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            R P LPEWI+  L QK+  PSI ++F+++H PR   D +  +PAR RLAYDE LAGQ++
Sbjct: 181 PRFPELPEWIDPALAQKQGLPSIRDSFHMLHEPRDPSDIDPQAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G P+   G ++ KIL+ +PFSPT SQ  AI DIL+DM+   RMLR+LQ
Sbjct: 241 LSLVRQRLRKVAGQPVLATGAVSGKILKTLPFSPTSSQNEAIADILKDMAGTERMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVAL++MAA +E+GGQAV+MAP  ILA+QH+  I K+  +  + +E++TG  
Sbjct: 301 GDVGSGKTLVALMSMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + LERIA G A I+IGTHALFQDS+ Y KL+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGREREEILERIASGAAQIVIGTHALFQDSVTYDKLMLAVVDEQHRFGVHQRLRLTAKGI 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+T+ +P+ R  E++ RL+  L
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTITVPMERTGEIVGRLQSAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +EGKKAYWICP +E+ +E +  S  ER  +L       I +IHGRMS  +K++ M +FKN
Sbjct: 481 AEGKKAYWICPLVEDSEELDLMSAEERHATLSTALGPDIGLIHGRMSGPEKDAAMMAFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L +  + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+RAG
Sbjct: 661 RKDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFLRAG 701


>gi|222148733|ref|YP_002549690.1| ATP-dependent DNA helicase RecG [Agrobacterium vitis S4]
 gi|221735719|gb|ACM36682.1| ATP-dependent DNA helicase RecG [Agrobacterium vitis S4]
          Length = 790

 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/701 (52%), Positives = 494/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPS L+PLFA +ST  GVG K +  L+ ++   +A + R +DLLF  P   IDR  +P 
Sbjct: 90  MRPSLLDPLFASVSTLPGVGPKLAQLLASLLGREDAEDARVVDLLFLSPHRLIDRRNQPG 149

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVT+TG + +H+    + R  PY++ L+D TGE+ L FF  K   L+     
Sbjct: 150 IARAPQGAIVTVTGRVDRHTPAPKENRNAPYRVFLHDETGELALTFFRAKGNWLEKALPV 209

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
              ITV+GKI     R  MVHP ++   S+    PL+E VY L  GLS  + KK +  A+
Sbjct: 210 DEIITVSGKIDWFNGRPSMVHPDFMVKASEAATMPLVEPVYPLTAGLSPKVLKKAVDHAV 269

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            RLP   EWI+  L+ K+ F ++  +F  +H+P   KD +  +PAR RLAYDE LAGQ++
Sbjct: 270 ERLPDFAEWIDPALVTKQGFDAVKPSFERLHSPLDEKDVDPQAPARRRLAYDEFLAGQVS 329

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G P+   G+++ KIL  +PF+PT SQ+ A+ DIL+DM   +RMLR++Q
Sbjct: 330 LALVRQRLRKVAGTPVRATGEMSGKILAALPFTPTNSQKDAVADILKDMESDSRMLRLVQ 389

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKTLVAL+AMAA VE GGQAV+MAP  ILA+QH+  + K      I V+++TG  
Sbjct: 390 GDVGAGKTLVALLAMAAVVENGGQAVLMAPTEILARQHHATLSKMAAAAGIAVDVLTGRT 449

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   LERIA GQA I+IGTHALFQDS+ Y+ L+L +VDEQHRFGV QRL+LT K  
Sbjct: 450 KGREREAVLERIASGQAQIVIGTHALFQDSVNYHNLMLAVVDEQHRFGVHQRLRLTAKGV 509

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+TV +P+ RI ++++RL+  +
Sbjct: 510 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTVPVERIGDIVDRLQAAI 569

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + GKKAYWICP +EE +ES   SV ERF  L     + I ++HGRM   +K++ M +FK+
Sbjct: 570 ASGKKAYWICPLVEETEESELMSVEERFEVLKMCLKAPIGLVHGRMKGEEKDAAMLAFKS 629

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG E SSCILLY  P
Sbjct: 630 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGAEASSCILLYKGP 689

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L +    RLS+L+++EDGFLIAEEDLK R EGE+LG +QSG P F IA  E H  LLE+A
Sbjct: 690 LGETGKARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQSGTPGFRIASLEHHADLLEVA 749

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA ++L +DPDLTS RG+++R LLYL++ +EA +F+RAG
Sbjct: 750 RKDAAYLLERDPDLTSARGEAVRTLLYLHRRDEAVRFLRAG 790


>gi|209549324|ref|YP_002281241.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535080|gb|ACI55015.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 701

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/701 (52%), Positives = 498/701 (71%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K++      + R IDL+F+ P S IDR  +P 
Sbjct: 1   MRPAILDPLFSPISGLPGVGPKIAELLVKLLGRETPEDCRVIDLIFHAPFSLIDRRNQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 61  IARAPQGAIVTITARVDRHQVPPRGKSNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPV 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GK+     R  MVHP YI    +  N PL+E +Y L  GLS    +KII  AL
Sbjct: 121 DAEVTVSGKVDWFNGRASMVHPDYIVRADEAENLPLVEPIYPLTAGLSPKTLRKIIDAAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            R P LPEWI++ L QK+  P+I ++F+++H PR   D +  +PAR RLAYDE LAGQ++
Sbjct: 181 PRFPELPEWIDQALAQKQGLPTIRDSFHMLHEPRDPADIDAQAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G P+   G+++ KIL+++PFS T SQ  AI ++L+DM+   RMLR+LQ
Sbjct: 241 LSLVRQRLRKVAGQPVQATGEVSAKILKSLPFSLTSSQNEAIAEVLKDMAGTERMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVAL+AMAA +E+GGQAV+MAP  ILA+QH+  I K+  +  + +EI+TG  
Sbjct: 301 GDVGSGKTLVALMAMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEILTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + L+RIA G A IIIGTHALFQDS+ Y KL+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGREREEILDRIASGAAQIIIGTHALFQDSVAYAKLMLAVVDEQHRFGVHQRLRLTAKGI 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+T+ +P+ R  E++ RL+  L
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTITVPMERTGEIVGRLQSAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +EGKKAYWICP +EE +E +  S  ER  +L       I +IHGRMS  +K++ M +FKN
Sbjct: 481 AEGKKAYWICPLVEESEELDLMSAEERHATLVAALGPDIGLIHGRMSGPEKDAAMMAFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L +  + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DP+LTS RG +IR LLYL++ +EA +F+RAG
Sbjct: 661 RKDAAYLIERDPELTSERGTAIRTLLYLFRRDEAIRFLRAG 701


>gi|86357712|ref|YP_469604.1| ATP-dependent DNA helicase protein [Rhizobium etli CFN 42]
 gi|86281814|gb|ABC90877.1| ATP-dependent DNA helicase protein [Rhizobium etli CFN 42]
          Length = 701

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/701 (52%), Positives = 494/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K+       + R IDLLF+ P S IDR  +P 
Sbjct: 1   MRPAILDPLFSPISGLPGVGPKIAELLVKLFGRETVEDCRVIDLLFHAPFSLIDRRNQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I    +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 61  IGLAPQGAIVTITARVDRHLVPPRGKSNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPV 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GK+     R  MVHP YI    +  + PL+E +Y L  GLS    +KII  AL
Sbjct: 121 DAEVTVSGKVDWFNGRASMVHPDYIVKAEEVESLPLVEPIYPLTAGLSPKTLRKIIDAAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            R P +PEWI+  L QK+  PSI ++F+++H PR   D +  +PAR RLAYDE LAGQ++
Sbjct: 181 PRFPEMPEWIDLTLTQKQGLPSIRDSFHMLHEPRDPSDVDPQAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++  K  G P++  G ++ KI++ +PFS T SQ  AI +IL+DM+   RMLR+LQ
Sbjct: 241 LSLVRQRLHKVAGQPVHATGAVSSKIVKALPFSLTSSQNDAIAEILKDMAGAERMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVAL+AMAA +E+GGQAV+MAP  ILA+QH+  I K+  +  + +E++TG  
Sbjct: 301 GDVGSGKTLVALMAMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + LERIA G A IIIGTHALFQDS+ Y KL+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGREREEILERIASGAAQIIIGTHALFQDSVTYDKLMLAVVDEQHRFGVHQRLRLTAKGI 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKP GRKPI+T+ +P+ R  E++ RL+  L
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPVGRKPIQTITVPMERTGEIVGRLQSAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +EGKKAYWICP +EE +E +  S  ER  +L     S I +IHGRMS  +K++ M +FKN
Sbjct: 481 AEGKKAYWICPLVEESEELDLMSAEERHATLVAALGSDIGLIHGRMSGPEKDAAMVAFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L +  + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+RAG
Sbjct: 661 RKDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFLRAG 701


>gi|37728039|gb|AAO43500.1| recombination and repair protein [Rhizobium etli]
          Length = 701

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/701 (52%), Positives = 493/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K+       + R IDLLF+ P S IDR  +P 
Sbjct: 1   MRPAILDPLFSPISGLPGVGPKIAELLVKLFGRETVEDCRVIDLLFHAPFSLIDRRNQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I    +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 61  IGLAPQGAIVTITARVDRHLVPPRGKSNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPV 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GK+     R  MVHP YI    +  + PL+E +Y L  GLS    +KII  AL
Sbjct: 121 DAEVTVSGKVDWFNGRASMVHPDYIVKAEEVESLPLVEPIYPLTAGLSPKTLRKIIDAAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            R P +PEWI+  L QK+  PSI ++F+++H PR   D +  +PAR RLAYDE LAGQ++
Sbjct: 181 PRFPEMPEWIDLTLTQKQGLPSIRDSFHMLHEPRDPSDVDPQAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++  K  G P++  G ++ KI++ +PFS T SQ  AI +IL+DM+   RMLR+LQ
Sbjct: 241 LSLVRQRLHKVAGQPVHATGAVSSKIVKALPFSLTSSQNDAIAEILKDMAGAERMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVAL+AMAA +E+GGQAV+MAP  ILA+QH+  I K+  +  + +E++TG  
Sbjct: 301 GDVGSGKTLVALMAMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + LERIA G A IIIGTHALFQDS+ Y KL+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGREREEILERIASGAAQIIIGTHALFQDSVTYDKLMLAVVDEQHRFGVHQRLRLTAKGI 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + G +D+SK+TEKP GRKPI+T+ +P+ R  E++ RL+  L
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGHMDVSKLTEKPVGRKPIQTITVPMERTGEIVGRLQSAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +EGKKAYWICP +EE +E +  S  ER  +L     S I +IHGRMS  +K++ M +FKN
Sbjct: 481 AEGKKAYWICPLVEESEELDLMSAEERHATLVAALGSDIGLIHGRMSGPEKDAAMVAFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L +  + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+RAG
Sbjct: 661 RKDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFLRAG 701


>gi|116252136|ref|YP_767974.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256784|emb|CAK07874.1| putative ATP-dependent DNA helicase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 701

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/701 (52%), Positives = 492/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K++      + R IDLLF+ P S IDR  +P 
Sbjct: 1   MRPAILDPLFSPISGLPGVGPKIADLLVKLLGRETLEDCRVIDLLFHAPFSLIDRRNQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 61  IARAPQGAIVTITARVDRHQVPPGGKSNIPYRVFLHDETGELTLVFFRGQAAWLEKQLPV 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GKI     R  MVHP YI    +  + PL+E +Y L  GLS    +KII   L
Sbjct: 121 DAEVTVSGKIDWFNGRASMVHPDYIVRADEAESLPLVEPIYPLTAGLSPKTLRKIIDAGL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            R P LPEWI+  L +K+  PSI ++F+++H PR   D +  +PAR RLAYDE LAGQ++
Sbjct: 181 PRFPELPEWIDLALTEKQGLPSIRDSFHMLHEPRDPSDIDPRAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G P+   G I+ KIL+ +PFS T SQ  AI ++L+DM+   RMLR+LQ
Sbjct: 241 LSLVRQRLRKVAGQPVTATGAISSKILKTLPFSLTGSQNEAIAEVLKDMAGNERMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVAL+AMAA +E+GGQAV+MAP  ILA+QH+  I K+  +  + +E++TG  
Sbjct: 301 GDVGSGKTLVALMAMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + LERIA G A I+IGTHALFQDS+ Y  L+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGREREEILERIASGAAQIVIGTHALFQDSVAYANLMLAVVDEQHRFGVHQRLRLTAKGL 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+T+ +P+ R  E++ RL+  +
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTITVPMERTGEIVGRLQSAI 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +EGKKAYWICP +EE +E +  S  ER  +L       I +IHGRMS  +K++ M +FKN
Sbjct: 481 AEGKKAYWICPLVEESEELDLMSAEERHATLVSALGPGIGLIHGRMSGPEKDAAMMAFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L +  + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R DA +++ +DP+LT+ RG +IR LLYL++ +EA +F+RAG
Sbjct: 661 RTDAAYLIERDPELTTERGTAIRTLLYLFRRDEAIRFLRAG 701


>gi|150396615|ref|YP_001327082.1| ATP-dependent DNA helicase RecG [Sinorhizobium medicae WSM419]
 gi|150028130|gb|ABR60247.1| ATP-dependent DNA helicase RecG [Sinorhizobium medicae WSM419]
          Length = 701

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/701 (51%), Positives = 492/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+PL T  G+G K     ++++      + R +DLLF+ P S IDR  +P 
Sbjct: 1   MRPALLDPLFSPLDTLPGIGPKTGELYARLLGRETIEDCRVVDLLFHAPHSLIDRRRQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+      IVTITG + +H      +   PY++ L+D TGE+ L FF  K   L+     
Sbjct: 61  IAYAPAGSIVTITGRVDRHQPAPSGRSNVPYRVFLHDDTGELALTFFRVKGNWLEKALPV 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
              + V+GK+     R  MVHP Y+   ++  N  L+E VY L  GL+    +K I  A+
Sbjct: 121 DETVIVSGKVDWFNGRASMVHPDYMVRAAESQNMTLVEPVYGLTAGLTSRPLRKSIEAAV 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +R+P LPEW++  LL+++ F S+ E+   +H PR   D +  +PAR RLAYDE LAGQ++
Sbjct: 181 ARVPDLPEWLDGALLRQQGFQSVKESLQRLHEPRDDADIDAQAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G P++  G+++  ++  +PFS T SQ +A+ +ILQDMS  +RMLR+LQ
Sbjct: 241 LSLVRQRLRKVSGTPVHPTGRLSSPVIAALPFSLTSSQSTAVDEILQDMSGTDRMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT VAL+A+ AA+EAGGQAV+MAP  ILA+QH+  + K      I ++++TG  
Sbjct: 301 GDVGSGKTAVALMAILAALEAGGQAVLMAPTEILARQHHATLSKLAAPAGITIDVLTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   LERIA G+  ++IGTHALFQD++ Y  L+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGKERDAVLERIASGETQLVIGTHALFQDAVSYRHLVLAVVDEQHRFGVHQRLRLTAKGV 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+TV IP  R DE++ERL   L
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPNERTDEIVERLDAAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S+GKKAYWICP +EE +E++  S  ER+ SL   F   + ++HGRM+  +K++VM +FK 
Sbjct: 481 SQGKKAYWICPLVEESEETDAMSADERYQSLARRFGKDVGLVHGRMTGPEKDAVMLAFKT 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GDIRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKSP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RLSVL+ TEDGFLIAEEDL+ R EGE+LG +QSG P FLIA  E H  LLE+A
Sbjct: 601 LSEAGRARLSVLRETEDGFLIAEEDLRLRGEGELLGTRQSGTPGFLIASLEAHGDLLEMA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DP+LTS RG ++R+LLYL++ +EA +F+RAG
Sbjct: 661 RKDAAYVIDRDPELTSERGAALRMLLYLFRRDEAIRFLRAG 701


>gi|241204637|ref|YP_002975733.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858527|gb|ACS56194.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 701

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/701 (52%), Positives = 492/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K++   +  + R IDLLF+ P S IDR  +P 
Sbjct: 1   MRPAILDPLFSPISGLPGVGPKIADLLVKLLGRESLEDCRVIDLLFHAPFSLIDRRNQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 61  IARAPQGAIVTITARVDRHQVPPGGKSNIPYRVFLHDETGELTLVFFRGQAAWLEKQLPV 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GKI     R  MVHP YI    +  + PL+E +Y L  GLS    +KII   L
Sbjct: 121 DAEVTVSGKIDWFNGRASMVHPDYIVRADETESLPLVEPIYPLTAGLSPKTLRKIIDAGL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            R P LPEW +  L Q++  PSI ++F+++H P    D +  +PAR RLAYDE LAGQ++
Sbjct: 181 PRFPELPEWDDLALTQREGLPSIRDSFHMLHEPHDPGDIDPQAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G P+   G I+ KIL+ +PFS T SQ  AI ++L+DM+   RMLR+LQ
Sbjct: 241 LSLVRQRLRKVAGQPVTATGAISSKILKALPFSLTSSQNEAIAEVLKDMAGNERMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVAL+AMAA +E+GGQAV+MAP  ILA+QH+  I K+  +  + +E++TG  
Sbjct: 301 GDVGSGKTLVALMAMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + LERIA G A I+IGTHALFQDS+ Y  L+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGREREEILERIASGAAQIVIGTHALFQDSVAYANLMLAVVDEQHRFGVHQRLRLTAKGL 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+T+ +P+ R  E++ RL+  +
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTITVPMERTGEIVGRLQSAI 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +EGKKAYWICP +EE +E +  S  ER  +L       I +IHGRMS  +K++ M +FKN
Sbjct: 481 TEGKKAYWICPLVEESEELDLMSAEERHATLVSALGPGIGLIHGRMSGPEKDAAMMAFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L +  + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DP+LT+ RG +IR LLYL++ +EA +F+RAG
Sbjct: 661 RKDAAYLIERDPELTTERGAAIRTLLYLFRRDEAIRFLRAG 701


>gi|227822022|ref|YP_002825993.1| ATP-dependent DNA helicase RecG [Sinorhizobium fredii NGR234]
 gi|227341022|gb|ACP25240.1| ATP-dependent DNA helicase [Sinorhizobium fredii NGR234]
          Length = 764

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/701 (50%), Positives = 497/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLFAPL +  G+G +     ++++   + ++ R IDL+F+ P S IDR  +P 
Sbjct: 64  MRPALLDPLFAPLDSLPGIGPRTGELYARLLGRESIDDCRVIDLVFHAPHSLIDRRQQPG 123

Query: 61  ISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTITG + +H  S + +   PY++ L+D TGE+ L FF  K   L+     
Sbjct: 124 IANAPQGSIVTITGRVDRHQPSPRGRPNVPYRVFLHDDTGELALTFFRVKGNWLEKALPI 183

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
              + V+GK+     R  MVHP Y+   ++  + PL+E VY L  GL++   +K I  A+
Sbjct: 184 DETVIVSGKVDWFNGRASMVHPDYMVRAAEAESLPLVEPVYGLTAGLTLRPLRKSIEAAV 243

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +R+P LPEW+++ L +++ F S  E F+ +H PR   D    +PAR RLAYDE LAGQ++
Sbjct: 244 ARVPDLPEWLDQTLQRQQGFASARECFHRLHEPRDETDIAPQAPARRRLAYDEFLAGQLS 303

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G P++  GK++  ++  +PFS T SQ +A+ DIL DMS   RMLR+LQ
Sbjct: 304 LSLVRQRLRKVAGTPVHATGKLSGPVIAALPFSLTASQSAAVGDILADMSGTERMLRLLQ 363

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT +AL++M AA+E+GGQAV+MAP  ILA+QH+  ++K      + ++++TG  
Sbjct: 364 GDVGSGKTAIALMSMLAAIESGGQAVLMAPTEILARQHHATLQKMAAPAGVTIDVLTGRT 423

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   LERIA G+  ++IGTHALFQD++ Y +L+L +VDEQHRFGV QRL+LT K  
Sbjct: 424 KGKERDAILERIASGETQMVIGTHALFQDAVNYRQLVLAVVDEQHRFGVHQRLRLTAKGI 483

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+TV +P  R DE+++RL   L
Sbjct: 484 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTVPTERTDEIVDRLDAAL 543

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S+GKKAYWICP +EE +E++  S  ER+  L + F   + ++HGRM   +K++VM +FKN
Sbjct: 544 SQGKKAYWICPLVEESEETDTMSADERYQRLVQRFGQDVGLVHGRMPGPEKDAVMLAFKN 603

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 604 GEIRVLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 663

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RLS+L+ TEDGF+IAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 664 LSEAGRARLSILRETEDGFVIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 723

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DPDLT+ RGQ++R LLYL++ +EA +F+RAG
Sbjct: 724 RKDAAYLIERDPDLTTERGQALRTLLYLHRRDEAIRFLRAG 764


>gi|163760202|ref|ZP_02167285.1| ATP-dependent DNA helicase [Hoeflea phototrophica DFL-43]
 gi|162282601|gb|EDQ32889.1| ATP-dependent DNA helicase [Hoeflea phototrophica DFL-43]
          Length = 705

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/705 (52%), Positives = 483/705 (68%), Gaps = 5/705 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L+PLF P+ +  G+G K +  L+++       +TR +DLL   P S IDR  R  
Sbjct: 1   MRPLELDPLFVPVESLPGIGPKSAEALARVTGRDGPEDTRALDLLLLPPHSMIDRTMRAG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+E  E  I T+   + +H      +R  PY++ ++D TGE+ L FF+ K   L+ +   
Sbjct: 61  ITEAPEGTIATLKVRVDRHQPSPPGRRSVPYRVYVHDDTGEMALTFFHSKQAWLEKILPV 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G  + V+GK++    R  MVHP +I   +     PLIE VY L  GLS  L ++ I  A+
Sbjct: 121 GETVLVSGKVEWFNGRPSMVHPDHIVAEADAHTLPLIEPVYPLTAGLSPKLLRRSIEAAI 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             +PVLPEW +  L+ +  FP +A+A   +H+P  A D E  +PAR RLAYDELLAGQ++
Sbjct: 181 ELMPVLPEWADPHLVAQNGFPDVADAIRQLHHPESAMDLEPQTPARRRLAYDELLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R+  +K  G P+N EG++ + +L  +PFS T SQ +A+ +IL DM+  +RMLR+LQ
Sbjct: 241 LALVRQTLRKLPGYPVNAEGRVRKAVLDALPFSLTGSQTTAVDEILADMAGSDRMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT VA++AMA AVEAGGQAV+MAP  ILA+QH+  I+K      I V ++T   
Sbjct: 301 GDVGSGKTAVAMLAMADAVEAGGQAVLMAPTEILARQHFATIEKMAAAAGIEVVVLTARA 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + LERIA G+A II+GTHALFQDS+ Y  L L +VDEQHRFGV QRL+LT K T
Sbjct: 361 KGRERTELLERIASGEAQIIVGTHALFQDSVVYNNLTLAVVDEQHRFGVHQRLRLTAKGT 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           APH+L+MTATPIPRTLVL + GD+D+SK+TEKP GR+PI TV IP  R+ ++IERL+  L
Sbjct: 421 APHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPVGRQPITTVTIPDERLGDIIERLRAAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHE----HFTSSIAIIHGRMSDIDKESVMD 535
            +GKKAYWICP +E+  ES+  SV  R  SL E     F   IA++HGRMS  DK+  M 
Sbjct: 481 RDGKKAYWICPLVEDSDESDLMSVESRHASLVEAFGREFADQIALVHGRMSSDDKDHAMS 540

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK+G  +LL+ATTVIEVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRGE  SSCILL
Sbjct: 541 AFKSGQTRLLVATTVIEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGEGASSCILL 600

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YH PL + +  RLSVL+ TEDGF IAEEDLK R EGE+LG +QSGMP F +A    H  L
Sbjct: 601 YHGPLGETAGARLSVLRETEDGFRIAEEDLKLRGEGEVLGTRQSGMPGFRLANLSAHADL 660

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           LEIAR DA+++L  DP L + RG ++R+LLYL + +EA +F+RAG
Sbjct: 661 LEIARSDARNVLESDPGLATPRGAALRMLLYLMRRDEAIRFLRAG 705


>gi|15965406|ref|NP_385759.1| ATP-dependent DNA helicase protein [Sinorhizobium meliloti 1021]
 gi|307308797|ref|ZP_07588493.1| ATP-dependent DNA helicase RecG [Sinorhizobium meliloti BL225C]
 gi|307317270|ref|ZP_07596711.1| ATP-dependent DNA helicase RecG [Sinorhizobium meliloti AK83]
 gi|15074587|emb|CAC46232.1| Probable ATP-dependent DNA helicase [Sinorhizobium meliloti 1021]
 gi|306897358|gb|EFN28103.1| ATP-dependent DNA helicase RecG [Sinorhizobium meliloti AK83]
 gi|306900803|gb|EFN31414.1| ATP-dependent DNA helicase RecG [Sinorhizobium meliloti BL225C]
          Length = 701

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/701 (51%), Positives = 494/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+PL T  G+G K     ++++      + R +DLLF+ P S IDR  +P 
Sbjct: 1   MRPALLDPLFSPLDTLPGIGPKTGELYARLLGRETVEDCRVVDLLFHIPHSLIDRRRQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+      IVTITG + +H      +   PY++ L+D TGE+ L FF  +   L+     
Sbjct: 61  IAHAPNGAIVTITGRVDRHQPAPSGRSNVPYRVFLHDETGELALTFFRVRGNWLEKALPI 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
              + V+GK+     R  MVHP Y+   ++  N PL+E VY L  GL+    +K I  A+
Sbjct: 121 DETVIVSGKVDWFNRRASMVHPDYMVRAAESENMPLVEPVYGLTAGLTSRPLRKSIEAAV 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +R+P LPEW+++ LL+++ F S  E+F  +H PR   D +  +PAR R+AYDE LAGQ++
Sbjct: 181 ARVPDLPEWLDEALLRQQGFKSAKESFQRLHEPRDETDIDAQAPARRRIAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G PI+  G+++  ++  +PFS T SQ +A+ +IL DMS  +RMLR+LQ
Sbjct: 241 LSLVRQRLRKVAGTPIHPTGRLSGPVIAALPFSLTNSQSAAVDEILADMSGADRMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT VAL+AM AAVE+GGQAV+MAP  ILA+QH+  + +      I ++I+TG  
Sbjct: 301 GDVGSGKTAVALMAMLAAVESGGQAVLMAPTEILARQHHATLSRMAAPAGITIDILTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   LERIA G+  ++IGTHALFQD++ Y +L+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGKERDAILERIASGETQLVIGTHALFQDAVIYRQLVLAVVDEQHRFGVHQRLRLTAKGI 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+TV IP  R DE++ERL   L
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPNERTDEIVERLDAAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +GKKAYWICP +EE +E++  S  ER+ SL   F   + ++HGRM+  +K++VM +FKN
Sbjct: 481 RQGKKAYWICPLVEESEETDAMSADERYQSLARRFGKDVGLVHGRMAGPEKDAVMLAFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GEIRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKSP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RLSVL+ +EDGFLIAEEDLK R EGE+LG +QSG P FLIA  E H  LLE+A
Sbjct: 601 LSEAGRARLSVLRESEDGFLIAEEDLKLRGEGELLGTRQSGTPGFLIASLEAHADLLEMA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DP+LTS RGQ++R LLYL++ +EA +F+RAG
Sbjct: 661 RKDAAYVIDRDPELTSERGQALRTLLYLFRRDEAIRFLRAG 701


>gi|254720432|ref|ZP_05182243.1| ATP-dependent DNA helicase RecG [Brucella sp. 83/13]
 gi|265985452|ref|ZP_06098187.1| ATP-dependent DNA helicase RecG [Brucella sp. 83/13]
 gi|306838991|ref|ZP_07471812.1| ATP-dependent DNA helicase RecG [Brucella sp. NF 2653]
 gi|264664044|gb|EEZ34305.1| ATP-dependent DNA helicase RecG [Brucella sp. 83/13]
 gi|306405897|gb|EFM62155.1| ATP-dependent DNA helicase RecG [Brucella sp. NF 2653]
          Length = 706

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/702 (49%), Positives = 470/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH  + + +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTHGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R +P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRQLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L+AMA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLAMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGCERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SEG+K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEGQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706


>gi|306841771|ref|ZP_07474457.1| ATP-dependent DNA helicase RecG [Brucella sp. BO2]
 gi|306288176|gb|EFM59563.1| ATP-dependent DNA helicase RecG [Brucella sp. BO2]
          Length = 714

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/702 (48%), Positives = 471/702 (67%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 13  MRPSLLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSVIDRRNRP 72

Query: 60  KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH  + + +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 73  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 132

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 133 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 192

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 193 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 252

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 253 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 312

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 313 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 372

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 373 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 432

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 433 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 492

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SEG+K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 493 VSEGQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 552

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 553 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 612

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 613 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 672

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 673 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 714


>gi|256015357|ref|YP_003105366.1| ATP-dependent DNA helicase RecG [Brucella microti CCM 4915]
 gi|255998017|gb|ACU49704.1| ATP-dependent DNA helicase RecG [Brucella microti CCM 4915]
          Length = 706

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/702 (48%), Positives = 471/702 (67%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH  + + +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SEG+K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEGQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706


>gi|306845912|ref|ZP_07478480.1| ATP-dependent DNA helicase RecG [Brucella sp. BO1]
 gi|306273804|gb|EFM55642.1| ATP-dependent DNA helicase RecG [Brucella sp. BO1]
          Length = 706

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/702 (48%), Positives = 471/702 (67%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH  + + +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +S+G+K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSDGQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 EGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706


>gi|254698844|ref|ZP_05160672.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260763325|ref|ZP_05875657.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260673746|gb|EEX60567.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 706

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/702 (48%), Positives = 470/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH  + + +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  NEA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRNEAIRLLRAG 706


>gi|17989031|ref|NP_541664.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 1 str.
           16M]
 gi|237817109|ref|ZP_04596101.1| ATP-dependent DNA helicase RecG [Brucella abortus str. 2308 A]
 gi|17984872|gb|AAL53928.1| ATP-dependent DNA helicase recg [Brucella melitensis bv. 1 str.
           16M]
 gi|237787922|gb|EEP62138.1| ATP-dependent DNA helicase RecG [Brucella abortus str. 2308 A]
          Length = 714

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/702 (48%), Positives = 470/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 13  MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 72

Query: 60  KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH  + + +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 73  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 132

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 133 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 192

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 193 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 252

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 253 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 312

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 313 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 372

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 373 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 432

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 433 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 492

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 493 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 552

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 553 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 612

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 613 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 672

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 673 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 714


>gi|23500325|ref|NP_699765.1| ATP-dependent DNA helicase RecG [Brucella suis 1330]
 gi|62317562|ref|YP_223415.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 1 str. 9-941]
 gi|83269543|ref|YP_418834.1| ATP-dependent DNA helicase RecG [Brucella melitensis biovar Abortus
           2308]
 gi|161620643|ref|YP_001594529.1| ATP-dependent DNA helicase RecG [Brucella canis ATCC 23365]
 gi|189022816|ref|YP_001932557.1| ATP-dependent DNA helicase RecG [Brucella abortus S19]
 gi|225686367|ref|YP_002734339.1| ATP-dependent DNA helicase RecG [Brucella melitensis ATCC 23457]
 gi|254691059|ref|ZP_05154313.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 6 str. 870]
 gi|254695635|ref|ZP_05157463.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 3 str. Tulya]
 gi|254702956|ref|ZP_05164784.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 3 str. 686]
 gi|254732291|ref|ZP_05190869.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 4 str. 292]
 gi|256043476|ref|ZP_05446405.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256059226|ref|ZP_05449432.1| ATP-dependent DNA helicase RecG [Brucella neotomae 5K33]
 gi|256111502|ref|ZP_05452516.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 3 str.
           Ether]
 gi|256256244|ref|ZP_05461780.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 9 str. C68]
 gi|256262492|ref|ZP_05465024.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 2 str.
           63/9]
 gi|260544799|ref|ZP_05820620.1| ATP-dependent DNA helicase RecG [Brucella abortus NCTC 8038]
 gi|260564672|ref|ZP_05835157.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 1 str.
           16M]
 gi|260568132|ref|ZP_05838601.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 4 str. 40]
 gi|260756656|ref|ZP_05869004.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 6 str. 870]
 gi|260760087|ref|ZP_05872435.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 4 str. 292]
 gi|260882473|ref|ZP_05894087.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 9 str. C68]
 gi|261216033|ref|ZP_05930314.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 3 str. Tulya]
 gi|261323176|ref|ZP_05962373.1| ATP-dependent DNA helicase RecG [Brucella neotomae 5K33]
 gi|261753563|ref|ZP_05997272.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 3 str. 686]
 gi|265989894|ref|ZP_06102451.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993000|ref|ZP_06105557.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 3 str.
           Ether]
 gi|297249602|ref|ZP_06933303.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 5 str. B3196]
 gi|23463938|gb|AAN33770.1| ATP-dependent DNA helicase RecG [Brucella suis 1330]
 gi|62197755|gb|AAX76054.1| RecG, ATP-dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82939817|emb|CAJ12825.1| DEAD/DEAH box helicase:RecA bacterial DNA recombination
           protein:Helicase, C-terminal:ATP/GTP-binding site motif
           A (P-loop):Ha [Brucella melitensis biovar Abortus 2308]
 gi|161337454|gb|ABX63758.1| ATP-dependent DNA helicase RecG [Brucella canis ATCC 23365]
 gi|189021390|gb|ACD74111.1| ATP-dependent DNA helicase RecG [Brucella abortus S19]
 gi|225642472|gb|ACO02385.1| ATP-dependent DNA helicase RecG [Brucella melitensis ATCC 23457]
 gi|260098070|gb|EEW81944.1| ATP-dependent DNA helicase RecG [Brucella abortus NCTC 8038]
 gi|260152315|gb|EEW87408.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 1 str.
           16M]
 gi|260154797|gb|EEW89878.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 4 str. 40]
 gi|260670405|gb|EEX57345.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 4 str. 292]
 gi|260676764|gb|EEX63585.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 6 str. 870]
 gi|260872001|gb|EEX79070.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 9 str. C68]
 gi|260917640|gb|EEX84501.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 3 str. Tulya]
 gi|261299156|gb|EEY02653.1| ATP-dependent DNA helicase RecG [Brucella neotomae 5K33]
 gi|261743316|gb|EEY31242.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 3 str. 686]
 gi|262763870|gb|EEZ09902.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000563|gb|EEZ13253.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092229|gb|EEZ16526.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 2 str.
           63/9]
 gi|297173471|gb|EFH32835.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 5 str. B3196]
 gi|326410738|gb|ADZ67802.1| ATP-dependent DNA helicase RecG [Brucella melitensis M28]
 gi|326554031|gb|ADZ88670.1| ATP-dependent DNA helicase RecG [Brucella melitensis M5-90]
          Length = 706

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/702 (48%), Positives = 470/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH  + + +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706


>gi|225629077|ref|ZP_03787110.1| ATP-dependent DNA helicase RecG [Brucella ceti str. Cudo]
 gi|225615573|gb|EEH12622.1| ATP-dependent DNA helicase RecG [Brucella ceti str. Cudo]
          Length = 714

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 13  MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 72

Query: 60  KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH  + + +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 73  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 132

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 133 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 192

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 193 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 252

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 253 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 312

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 313 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 372

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 373 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 432

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 433 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 492

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 493 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 552

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 553 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 612

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 613 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 672

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL   +EA + +RAG
Sbjct: 673 ARKDARYILASDPDLESERGQALRVLLYLLGRDEAIRLLRAG 714


>gi|254711150|ref|ZP_05172961.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis B2/94]
 gi|256029531|ref|ZP_05443145.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis M292/94/1]
 gi|256157726|ref|ZP_05455644.1| ATP-dependent DNA helicase RecG [Brucella ceti M490/95/1]
 gi|256253303|ref|ZP_05458839.1| ATP-dependent DNA helicase RecG [Brucella ceti B1/94]
 gi|260167379|ref|ZP_05754190.1| ATP-dependent DNA helicase RecG [Brucella sp. F5/99]
 gi|261220417|ref|ZP_05934698.1| ATP-dependent DNA helicase RecG [Brucella ceti B1/94]
 gi|261318742|ref|ZP_05957939.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis B2/94]
 gi|261756787|ref|ZP_06000496.1| ATP-dependent DNA helicase RecG [Brucella sp. F5/99]
 gi|265986540|ref|ZP_06099097.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis M292/94/1]
 gi|265996232|ref|ZP_06108789.1| ATP-dependent DNA helicase RecG [Brucella ceti M490/95/1]
 gi|260919001|gb|EEX85654.1| ATP-dependent DNA helicase RecG [Brucella ceti B1/94]
 gi|261297965|gb|EEY01462.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis B2/94]
 gi|261736771|gb|EEY24767.1| ATP-dependent DNA helicase RecG [Brucella sp. F5/99]
 gi|262550529|gb|EEZ06690.1| ATP-dependent DNA helicase RecG [Brucella ceti M490/95/1]
 gi|264658737|gb|EEZ28998.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis M292/94/1]
          Length = 706

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH  + + +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL   +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLLGRDEAIRLLRAG 706


>gi|254712392|ref|ZP_05174203.1| ATP-dependent DNA helicase RecG [Brucella ceti M644/93/1]
 gi|254715464|ref|ZP_05177275.1| ATP-dependent DNA helicase RecG [Brucella ceti M13/05/1]
 gi|261217197|ref|ZP_05931478.1| ATP-dependent DNA helicase RecG [Brucella ceti M13/05/1]
 gi|261320068|ref|ZP_05959265.1| ATP-dependent DNA helicase RecG [Brucella ceti M644/93/1]
 gi|260922286|gb|EEX88854.1| ATP-dependent DNA helicase RecG [Brucella ceti M13/05/1]
 gi|261292758|gb|EEX96254.1| ATP-dependent DNA helicase RecG [Brucella ceti M644/93/1]
          Length = 706

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH  + + +   P+++  +D TGE+ L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGELALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL   +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLLGRDEAIRLLRAG 706


>gi|163844733|ref|YP_001622388.1| ATP-dependent DNA helicase RecG [Brucella suis ATCC 23445]
 gi|163675456|gb|ABY39566.1| ATP-dependent DNA helicase RecG [Brucella suis ATCC 23445]
          Length = 706

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH  + + +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+  ++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGGLVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706


>gi|148558658|ref|YP_001257569.1| ATP-dependent DNA helicase RecG [Brucella ovis ATCC 25840]
 gi|148369943|gb|ABQ62815.1| ATP-dependent DNA helicase RecG [Brucella ovis ATCC 25840]
          Length = 706

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQ-HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + Q   + + +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVIVDQRQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706


>gi|254699818|ref|ZP_05161646.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 5 str. 513]
 gi|261750290|ref|ZP_05993999.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 5 str. 513]
 gi|261740043|gb|EEY27969.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 5 str. 513]
          Length = 706

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH  + + +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L   LS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTADLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706


>gi|294853622|ref|ZP_06794294.1| ATP-dependent DNA helicase RecG [Brucella sp. NVSL 07-0026]
 gi|294819277|gb|EFG36277.1| ATP-dependent DNA helicase RecG [Brucella sp. NVSL 07-0026]
          Length = 706

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH  + + +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L   LS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTASLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALSLVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706


>gi|254705926|ref|ZP_05167754.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis M163/99/10]
 gi|261313354|ref|ZP_05952551.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis M163/99/10]
 gi|261302380|gb|EEY05877.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis M163/99/10]
          Length = 706

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/702 (48%), Positives = 468/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH  + + +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  E F SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEEHFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL   +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLLGRDEAIRLLRAG 706


>gi|13470981|ref|NP_102550.1| ATP-dependent DNA helicase RecG [Mesorhizobium loti MAFF303099]
 gi|14021724|dbj|BAB48336.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099]
          Length = 702

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/702 (48%), Positives = 476/702 (67%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANET-RFIDLLFYHPSSFIDRHYRP 59
           MRPS L+PLF P+++  GVG K    + K++     +   R  DLLF  P + IDR  RP
Sbjct: 1   MRPSILDPLFVPITSLAGVGPKVGALIEKVVTADLGDRAARAGDLLFVLPHTVIDRRSRP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+  +E +IVT+   I +H       R  PY++  +D TGEI L FF+     L+    
Sbjct: 61  GIAGSAEGQIVTLDVRIDRHQPPPRGNRSVPYRVYAHDDTGEIGLTFFHAHAAYLEKAMP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G  + V+G+++    R  MVHP +I   S+  N PL+E VY L  GLS  + ++ I +A
Sbjct: 121 VGEHVVVSGRMEWFNGRPTMVHPDHIALASEAENLPLVEPVYPLTAGLSGKVLRRAIGQA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+RLP LPEW +   +++ +FP+ A+A   IHNP    D      A  RLAYDELLAGQ+
Sbjct: 181 LARLPELPEWQDVAFMRRHTFPTFADALTRIHNPADPIDVSIEGAAWRRLAYDELLAGQV 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +L L+R + ++  G P+  +G+I +K+   +P+S T SQE A+ +I  D++   RMLR+L
Sbjct: 241 SLALVRAKIRRLSGRPLVGDGRIVEKLRAALPYSLTASQEFALAEINADLADPERMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL+AMA AVEAGGQA +MAP  ILA+QH   I  +     + + I+TG 
Sbjct: 301 QGDVGSGKTVVALLAMARAVEAGGQAALMAPTEILARQHLATIAPFAAKVGLRIAILTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R + L  +A G+  I++GTHALFQ+++ ++ L+L ++DEQHRFGV QRL +T K 
Sbjct: 361 EKGRERTETLAGLASGEIDIVVGTHALFQETVTFHDLVLAVIDEQHRFGVHQRLAITAKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKPAGR+PI+TV +P+ R+DE++ R++  
Sbjct: 421 DAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPIRTVTLPLERLDELVARMQDA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++ G+K YWICP +EE +E    S  +RF SL   F   I ++HGRM   +K+  M +FK
Sbjct: 481 VAGGQKIYWICPLVEESEEIKLMSAEDRFASLKPLFGDRIGLVHGRMKGAEKDEAMRAFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++LIATTVIEVG+DV DA++++IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY  
Sbjct: 541 EGETRILIATTVIEVGVDVPDATVMVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKD 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RLSV++ TEDGFLIAEEDLK R EGE+LG +QSG P F +A+ E H  LLE 
Sbjct: 601 PLGETAKRRLSVMRETEDGFLIAEEDLKLRGEGELLGTRQSGTPGFQVARIEAHADLLEA 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR DA+ IL++DP+L S RG+++R+LLYL+  +EA + +RAG
Sbjct: 661 ARDDARLILSRDPELQSDRGEALRLLLYLFGRDEAVRLLRAG 702


>gi|153010963|ref|YP_001372177.1| ATP-dependent DNA helicase RecG [Ochrobactrum anthropi ATCC 49188]
 gi|151562851|gb|ABS16348.1| ATP-dependent DNA helicase RecG [Ochrobactrum anthropi ATCC 49188]
          Length = 706

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K +  L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAALLGKLLGTDIPGAEPKVGQLLFLAPHSVIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH      +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIALAQEGAIVTLEVIVDQHQPAPPGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       N P++E VY L  GLS     + + EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASLEDAANLPMVEPVYPLTAGLSPKTLARAVKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+P L EWI+  LL ++ F S  ++ N +H P    D    S +R RLAYDE LAGQ+
Sbjct: 185 LTRVPPLQEWIDGPLLARERFTSFQQSLNTLHLPEDPSDIALESISRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G+I  +I+R++P+  T+ Q+ A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGRIVAEIMRHLPYRLTEGQDQAVREIITDLKSPERMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKTALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+LVI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRDRNAVLEGLKTGEIDIVIGTHALFQEKVEYHDLVLVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKPAGR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++EG+K YWICP +EE +     S  ERF +L   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VAEGQKIYWICPLVEESEVVELTSAEERFENLKPVFGDRIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++ILT DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 665 ARKDARYILTSDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706


>gi|260463947|ref|ZP_05812143.1| ATP-dependent DNA helicase RecG [Mesorhizobium opportunistum
           WSM2075]
 gi|259030322|gb|EEW31602.1| ATP-dependent DNA helicase RecG [Mesorhizobium opportunistum
           WSM2075]
          Length = 702

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/702 (48%), Positives = 472/702 (67%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANET-RFIDLLFYHPSSFIDRHYRP 59
           MRPS L+PLF P+++  GVG K    + K++     +   R  DLLF  P + IDR  RP
Sbjct: 1   MRPSILDPLFVPITSLAGVGPKVGALIEKVVAADLGDRAARAGDLLFVLPHTVIDRRNRP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+  +E  IVT+   I +H       R  PY++  +D TGEI L FF+     L+    
Sbjct: 61  GIALAAEGAIVTLEVRIDRHQPPPRGNRSVPYRVFAHDDTGEIGLTFFHAHASYLEKAMP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G  + V+G+++    R  MVHP +I   S+  N PL+E VY L  GLS  + ++ I +A
Sbjct: 121 VGEHVVVSGRMEWFNGRPTMVHPDHIALASEAENLPLVEPVYPLTAGLSGKVLRRAIGQA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+RLP LPEW +  L+++ +FP+  +A   IHNP    D      A  RLAYDELLAGQ+
Sbjct: 181 LARLPELPEWQDGALMRRHTFPTFGDALARIHNPADPIDVSIDGAAWRRLAYDELLAGQV 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +L L+R + ++  G P+  +G I +K+   +P+S T SQE A+ +I  D++   RMLR+L
Sbjct: 241 SLALVRAKIRRLSGRPLVGDGSIVEKLRAALPYSLTASQEFALAEINADLADPERMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL+AMA AVEAGGQA +MAP  ILA+QH   I     +  + + I+TG 
Sbjct: 301 QGDVGSGKTVVALLAMARAVEAGGQAALMAPTEILARQHLATIAPLADSIGLRIAILTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L  +A G+  I++GTHALFQ+++ +  L+L ++DEQHRFGV QRL +T K 
Sbjct: 361 EKGRERADTLAGLASGEIDIVVGTHALFQETVTFDDLVLAVIDEQHRFGVHQRLAITAKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKPAGR+PI+TV +P+ R+DE++ R++  
Sbjct: 421 DAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPIRTVTLPLERLDELVGRMEDA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++ G+K YWICP +EE +E    S  +RF SL   F   I ++HGRM   +K+  M +FK
Sbjct: 481 VAGGQKIYWICPLVEESEEIKLMSAEDRFASLKPLFGDRIGLVHGRMKGAEKDEAMRAFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++LIATTVIEVG+DV DA++++IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY  
Sbjct: 541 QGETRILIATTVIEVGVDVPDATVMVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKD 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RLSV++ TEDGFLIAEEDLK R EGE+LG +QSG P F +A+ E H  LLE 
Sbjct: 601 PLGETAKRRLSVMRETEDGFLIAEEDLKLRGEGELLGTRQSGTPGFQVARIEAHADLLEA 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR DA+ IL++DP+L S RG+++R+LLYL+  +EA + +RAG
Sbjct: 661 ARDDARLILSRDPELQSDRGEALRLLLYLFGRDEAVRLLRAG 702


>gi|319783818|ref|YP_004143294.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169706|gb|ADV13244.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 702

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/702 (47%), Positives = 470/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANET-RFIDLLFYHPSSFIDRHYRP 59
           MRP+ L+PLF P+++  GVG K    + K++     +   R  DLLF  P + IDR  RP
Sbjct: 1   MRPTILDPLFVPITSLAGVGPKVGALIEKVVPADLGDRAARAGDLLFVLPHTVIDRRSRP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+  +E +IVT+   I +H       R  PY++  +D TGEI L FF+     L+    
Sbjct: 61  GIAGSAEGQIVTLDVRIDRHQPPPRGNRSVPYRVFAHDDTGEIALTFFHAHASYLEKAMP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+G+++    R  MVHP +I   S+  N PL+E VY L  GLS  + ++ I +A
Sbjct: 121 EGEHVVVSGRMEWFNGRPSMVHPDHIALASEAENLPLVEPVYPLTAGLSGKVLRRAIGQA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+P  PEW +   +++ +F ++ +A   IHNP    D      A  RLAYDELLA Q+
Sbjct: 181 LTRVPEFPEWQDGAFMRRHTFAAVGDALARIHNPADPIDVSIDGAAWRRLAYDELLASQV 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +L L+R + ++  G P+  +G+I +K+   +P+S T SQE A+ +I  D++   RMLR+L
Sbjct: 241 SLALVRAKVRRLSGRPLVGDGRIVEKLRAALPYSLTSSQEFALAEINADLADPERMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL+AMA AVEAGGQA +MAP  ILA+QH   I        + + I+TG 
Sbjct: 301 QGDVGSGKTVVALLAMARAVEAGGQAALMAPTEILARQHLATITPLAAKVGLRIAILTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L  +A G+  I++GTHALFQ+++ ++ L+  ++DEQHRFGV QRL +T K 
Sbjct: 361 EKGRERADTLAGLASGEIDIVVGTHALFQETVTFHDLVFAVIDEQHRFGVHQRLAITAKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKPAGR+PI+TV +P+ R+DE++ R+   
Sbjct: 421 DAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPIRTVTLPLERLDELVARMVDA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++ G+K YWICP +EE +E    S  +RF SL   F   I ++HGR+   +K+  M +FK
Sbjct: 481 VAGGQKIYWICPLVEESEEIKLMSAEDRFASLKPLFGDRIGLVHGRLKGAEKDEAMRAFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++LIATTVIEVG+DV DA++++IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY  
Sbjct: 541 QGETRILIATTVIEVGVDVPDATVMVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKD 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RLSV++ TEDGFLIAEEDLK R EGE+LG +QSG P F +A+ E H  LLE 
Sbjct: 601 PLGETAKRRLSVMRETEDGFLIAEEDLKLRGEGELLGTRQSGTPGFQVARIEAHADLLEA 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR DA+ IL++DP+L S RG+++R+LLYL+  +EA + +RAG
Sbjct: 661 ARDDARLILSRDPELQSQRGEALRLLLYLFGRDEAVRLLRAG 702


>gi|328543943|ref|YP_004304052.1| ATP-dependent DNA helicase RecG [polymorphum gilvum SL003B-26A1]
 gi|326413687|gb|ADZ70750.1| ATP-dependent DNA helicase RecG [Polymorphum gilvum SL003B-26A1]
          Length = 700

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/700 (45%), Positives = 457/700 (65%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPS L+PLFAP+S   GVG K +   + ++      E    DLLF+ P S IDR  RP 
Sbjct: 1   MRPSVLDPLFAPVSVLPGVGPKIARLFATLLADTPGREPTVADLLFHLPHSVIDRRKRPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           ++      +VT+   + +H       + PY++L +D TG I L+FF+ + + L+ V  EG
Sbjct: 61  VARCENGDVVTLDLVVERHLPSPRHGKAPYRVLASDATGTIALVFFHPRRDWLETVLPEG 120

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            +  V+GK++    R  MVHP YI    +      +E VY +  GL+    +K ++ AL 
Sbjct: 121 ARRIVSGKVEWFSERPQMVHPDYILTAEEAEAMRAVEPVYPMTAGLAPKTLQKAVLGALE 180

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           RLP+LPEW++     ++ +P   +A    H PR+A D   T     RLAYDE LA Q+AL
Sbjct: 181 RLPLLPEWLDPAFKARQGWPDFDQALRFAHRPREANDLVPTGATLRRLAYDEYLANQLAL 240

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R   ++  G     +G++  +IL  +P++ T  Q+ A+++I  D+   +RMLR+LQG
Sbjct: 241 ALVRANMRQLGGEARRPDGRLTARILAALPYALTAGQQQAVREIEADLRSPHRMLRLLQG 300

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG+GKT+VAL+AMAA +E G QAV+MAP  ILA+QH+  ++   +   I + ++TG   
Sbjct: 301 DVGAGKTVVALLAMAAVIETGAQAVLMAPTEILARQHFASMEPLCRAAGIRIAVLTGRDS 360

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR   + +  G   +++GTHALFQ S+ +  L + +VDEQHRFGV QRL L+ K   
Sbjct: 361 AKTRRDTQDALQSGTIDLVVGTHALFQGSVAFRNLGIAVVDEQHRFGVHQRLALSAKGRG 420

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+MTATPIPRTLVLT  GD+D+S++TEKPAGRKP+ TV + ++R+ E++ R+K  ++
Sbjct: 421 VDVLVMTATPIPRTLVLTCFGDMDVSRLTEKPAGRKPVTTVSVSLDRMGEMVARIKAAVA 480

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           EG+K YW+CP +EE ++++  +V +R   L +     +A++HGRMS  +K++ M +FK+G
Sbjct: 481 EGQKVYWVCPLVEESEKTDLAAVEDRHRHLSQELKVPVALVHGRMSGEEKDAAMTAFKDG 540

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+DV DA+II+IE+AE FGLAQLHQLRGRVGRG+  SSC+LLY  PL
Sbjct: 541 AARVLVATTVIEVGVDVPDATIIVIEHAERFGLAQLHQLRGRVGRGDRPSSCVLLYKGPL 600

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + +  RLSV++ T DGFLIAEEDL+ R EGEILG +QSG P F +A+ E H  L+EIAR
Sbjct: 601 GETAAARLSVMRETNDGFLIAEEDLRLRGEGEILGTRQSGTPGFRLARLEAHGDLMEIAR 660

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDL   RG ++R LLYL+  +EA + +RAG
Sbjct: 661 DDARLVLETDPDLKGPRGAALRCLLYLFSRDEAIRLLRAG 700


>gi|114705015|ref|ZP_01437923.1| ATP-dependent DNA helicase [Fulvimarina pelagi HTCC2506]
 gi|114539800|gb|EAU42920.1| ATP-dependent DNA helicase [Fulvimarina pelagi HTCC2506]
          Length = 700

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/701 (46%), Positives = 464/701 (66%), Gaps = 2/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLFA ++T  GVG K +  L  ++        R  DLLF+ PS  IDR  R +
Sbjct: 1   MRPAILDPLFAAVTTLDGVGPKVAGLLQTLL-VRPGQTLRVRDLLFHLPSGLIDRRRREE 59

Query: 61  ISEISEERIVTITGYISQHSS-FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I    +  IVT+T  I +H    + Q   PY++   D TGEI L +F  K   L+N+   
Sbjct: 60  ILSAGQGAIVTLTVRIDRHQPPGRAQSNAPYRVFAQDETGEIALTYFRAKAAWLENLLPV 119

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K+ V+GK++    R  MVHP ++   ++  N  L+E +Y L  GLS  + ++ I +AL
Sbjct: 120 GEKMLVSGKVEWFNGRAQMVHPDFVAPLAEAENHSLVEPIYPLTAGLSGKVLRRAIAQAL 179

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            + P +PEWIE  +L++++FP + +    +H+P  A D +  SPA  RLAYDE LA Q+A
Sbjct: 180 EKTPDMPEWIEPGVLKRQTFPGLKDGLARLHDPSDAIDLDPASPAFRRLAYDEFLANQLA 239

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L R++ + + G  +  +G +  ++   +PF  T++Q SA+ DIL DM    RMLR+LQ
Sbjct: 240 LTLSRQKMRGKSGRSLEGDGSLLARLKHALPFELTEAQVSAVGDILADMKSPERMLRLLQ 299

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VAL+AMA A EAG Q+V++AP  ILA+QH   + K      I +EI+TG  
Sbjct: 300 GDVGAGKTVVALMAMARAAEAGVQSVLLAPTEILARQHASGLSKLCDAAGITLEILTGRD 359

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   L RI  G   I++GTHALFQ+ + Y+ L LV+VDEQHRFGV QRL+L+ K  
Sbjct: 360 TGKARDAKLGRIESGDTQIVVGTHALFQEGVDYHDLGLVVVDEQHRFGVHQRLQLSAKGK 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P +L+MTATPIPRTLVL + GD+D+S++  KPAGRKPI TV +P  R+ ++++R+   +
Sbjct: 420 RPDLLVMTATPIPRTLVLAAFGDMDVSRLVGKPAGRKPIATVALPEERLLDIVKRIGSAV 479

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G + YW+CP +EE ++S+  +  ER   L + F   + ++HGRM   +K++ M +F+ 
Sbjct: 480 EGGDRVYWVCPLVEESEKSDLTAAEERAEVLRKFFGDQVGLVHGRMKGEEKDAAMAAFQA 539

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GT ++++ATTVIEVG+DV DASII+IE+AE FGL+QLHQLRGRVGRG + SSC+LLY PP
Sbjct: 540 GTTRIIVATTVIEVGVDVPDASIIVIEHAERFGLSQLHQLRGRVGRGNKASSCVLLYRPP 599

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + +  RL++++ TEDGF IAEEDLK R EG++LG +QSGMP F +A+ E H  L+E+A
Sbjct: 600 LGETASARLNIMRETEDGFRIAEEDLKLRGEGDLLGTQQSGMPFFRLARLEHHADLMEVA 659

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R DA+ IL  DP+L S RG+++R LLYL+  +EA + +R+G
Sbjct: 660 RDDARLILATDPELKSARGEALRTLLYLFGKDEAVRLLRSG 700


>gi|254469973|ref|ZP_05083378.1| ATP-dependent DNA helicase RecG [Pseudovibrio sp. JE062]
 gi|211961808|gb|EEA97003.1| ATP-dependent DNA helicase RecG [Pseudovibrio sp. JE062]
          Length = 700

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/700 (46%), Positives = 459/700 (65%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLFA ++   G+G K +  ++ ++      E R  DLLF+ P + IDR  RP 
Sbjct: 1   MRPTRLDPLFASVTKLPGIGPKIAKTITNLLVGSPDREARISDLLFHVPVNVIDRRLRPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           ++   E  IVT+   I QH +     R PYK+L +D TG I L+FF+ + + L+ V   G
Sbjct: 61  VAASPEGEIVTLVLQIDQHRAPPRGSRAPYKVLAHDETGAIELVFFHARGDYLQRVLPVG 120

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            K  ++GK++    R  MVHP ++    +  N PL+E VY +  GL+    ++ +  AL 
Sbjct: 121 EKRIISGKVEWFNERAQMVHPDHMVSEEEAENLPLVEPVYPMTAGLASKTLQRAMGTALQ 180

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            LP +PEW  K+ +++++FP    A   IH P  A+D      AR RLAYDE LA Q+AL
Sbjct: 181 FLPQMPEWQNKEFVEQRNFPPFDVALRSIHKPEDARDLAPEGLARARLAYDEFLANQLAL 240

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R   +   G     +G + +KIL  +PF  T  QE A+K+I  D+ +  RMLR+LQG
Sbjct: 241 ALVRNSLRHMGGKARKGDGSLRRKILAALPFELTDGQEDALKEIFADLEEPTRMLRLLQG 300

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+V L+AMAA +E GGQA +MAP  ILA+QH+  +K       I   +++G   
Sbjct: 301 DVGSGKTVVGLMAMAAVIETGGQAAMMAPTDILARQHFASMKPLCDAAGIRAAVLSGKDT 360

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +R+  E +  G+  +I+GTHALFQ ++ +  L + IVDEQHRFGV QRL L+ K   
Sbjct: 361 AKTKREIGEALEAGEIDLIVGTHALFQSTVNFKDLGITIVDEQHRFGVHQRLALSSKGAH 420

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+MTATPIPRTLVL+  GD+D+S++T+KP GR+ IKTV I ++RI EV+ERL+ +++
Sbjct: 421 VDVLVMTATPIPRTLVLSYFGDMDVSRLTDKPKGRQEIKTVSISLDRIGEVVERLRAMIA 480

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +G+K YW+CP +EE ++ +  +  ERFN L       +A++HGR    +K++ MD+FKNG
Sbjct: 481 QGQKIYWVCPLVEESEKIDLAAAEERFNDLQNALGPVVALVHGRQKADEKQAAMDAFKNG 540

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+DV DA+II+IE+AE FGLAQLHQLRGRVGRG   SSC+LL+  PL
Sbjct: 541 DARVLVATTVIEVGVDVPDATIIVIEHAERFGLAQLHQLRGRVGRGSLASSCLLLFKAPL 600

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++ + +RL++L+ T DGFLIAEEDL+ R EGE+LG +QSG P F +A  E H  L+EIAR
Sbjct: 601 NETAASRLNILRQTNDGFLIAEEDLRLRGEGELLGTRQSGSPGFRLASIEDHADLMEIAR 660

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DAK I+  DP+L + RG ++R LLYL+  +EA + +RAG
Sbjct: 661 DDAKLIMATDPELETERGDALRHLLYLFARDEAIKLLRAG 700


>gi|118589912|ref|ZP_01547316.1| ATP-dependent DNA helicase [Stappia aggregata IAM 12614]
 gi|118437409|gb|EAV44046.1| ATP-dependent DNA helicase [Stappia aggregata IAM 12614]
          Length = 700

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/700 (45%), Positives = 457/700 (65%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L+PLFAP+ST  G+G K    +S ++      +    DLLF+ P S IDR +RP 
Sbjct: 1   MRPPVLDPLFAPVSTLPGIGPKIEKLVSGLVGSQPDRDATVADLLFHIPHSLIDRRHRPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+      IVT+   I +H +     + PY+I   D TG+IT +FF+ + + L+  F EG
Sbjct: 61  IAYSENGDIVTLDVTIGRHMAPPRHSKAPYRINAFDETGQITFVFFHPRRDWLEKTFPEG 120

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            +  V+GK++    R  MVHP Y     +    P IE VY L  GL+    +K +  A+ 
Sbjct: 121 ERRIVSGKVEWFNERPQMVHPDYSLKPEEAEEMPAIEPVYPLTAGLASKTLQKAVRAAVD 180

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           R+PVLPEW+ +  L +  +P   EA   +H P +  D E  SP  +RLAYDELLA Q+AL
Sbjct: 181 RIPVLPEWLNEAHLHQTGWPDFGEALKTLHAPHERSDLEPASPYMQRLAYDELLASQLAL 240

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++R   +   GI    +G + + ++  +PF  T SQ  AI++I +D+++  RMLR+LQG
Sbjct: 241 AMVRAHMRTLGGIARKPKGDLQKAVIAALPFQLTGSQAKAIEEINEDLAKPVRMLRLLQG 300

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG+GKT+VAL A+A  +E G Q  +MAP  ILA+QHY  +    Q   I + ++TG   
Sbjct: 301 DVGAGKTVVALAALAQVIETGAQGALMAPTEILARQHYASMLPLCQKAGIRLALMTGKDS 360

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           Q  RR   E++  G+  +++GTHALFQ S+ +  L +V+VDEQHRFGV QRL L+ K   
Sbjct: 361 QKERRIRQEQLDAGEIDLVVGTHALFQGSVTFRNLAMVVVDEQHRFGVHQRLALSAKGNG 420

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+MTATPIPRTLVLT  GD+D+S++T+KPAGRKPI TV + ++R+DE+I R+   ++
Sbjct: 421 VDVLVMTATPIPRTLVLTGFGDMDVSRLTDKPAGRKPITTVSVSLDRLDEIIGRVGAAVA 480

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +G+K YW+CP +EE ++ +  +V +R   L       ++++HGRM+  +K++ M  FK+G
Sbjct: 481 DGQKVYWVCPLVEESEKIDLAAVEKRHRVLEHALRQRVSLVHGRMNADEKDAAMADFKSG 540

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG+DV DA+II+IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY  PL
Sbjct: 541 VTKVLVATTVIEVGVDVPDATIIVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKGPL 600

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + +  RL++++ T DGFLIAEEDLK R  GEILG +QSG P F IA+ + H  L+E+AR
Sbjct: 601 GETAGARLNIMRQTNDGFLIAEEDLKLRGGGEILGTRQSGTPGFRIARADEHADLMEVAR 660

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ IL  DPDL + RG+++R LLYL+  + A + +RAG
Sbjct: 661 DDARLILELDPDLKTKRGEALRCLLYLFGRDAAIRLLRAG 700


>gi|319898844|ref|YP_004158937.1| ATP-dependent DNA helicase [Bartonella clarridgeiae 73]
 gi|319402808|emb|CBI76359.1| ATP-dependent DNA helicase [Bartonella clarridgeiae 73]
          Length = 701

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/701 (48%), Positives = 455/701 (64%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS LNPLF  +ST  GV  K    L+K++N      E   IDLL   P S IDR  RP
Sbjct: 1   MRPSLLNPLFTSISTLAGVNIKICSLLAKVLNINFTQREPTLIDLLRLMPHSVIDRRKRP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
            I+   E  IVT+   I QH+      R PY+++ +D TG I L+FF+ +   L+    E
Sbjct: 61  GIAFAQEGGIVTLEITIDQHTPPTNYSRSPYRVIGHDQTGTINLIFFHAQRPWLEKQLPE 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G+K+ V+GK+++ K ++ M+HP +I  + Q    P IE +Y    GLS    ++ + +AL
Sbjct: 121 GKKVIVSGKVERFKGQLSMIHPDHIAFHEQLDQIPFIEPIYPSTAGLSTKTIRRAMQKAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             +P LPEWIE+ + ++ +F S   A   IH P    D    S AR+RLAYDE  A QIA
Sbjct: 181 ECIPPLPEWIEESVKKEHNFSSFPVALRRIHAPINPDDLSLESTARKRLAYDEFFASQIA 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R + K   GI     G   +K+L  +PF  T  Q  AIKDI  D++    MLR+LQ
Sbjct: 241 LGLVRLETKSLSGISRPSTGAYTKKLLEVLPFQLTNGQIKAIKDIESDLASPEPMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VAL+A+A   E  GQ+ +M P  +LA+QH+  I    +   +   ++TG  
Sbjct: 301 GDVGTGKTVVALMAIAQIAENAGQSALMVPTEVLARQHFATITPLVEKIGLKTALLTGRE 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   L+ I  G+  IIIGTHAL Q+++ Y  L L I+DEQHRFGV QRL LT K  
Sbjct: 361 KGKVRANILDAILSGETSIIIGTHALIQENVTYNNLALAIIDEQHRFGVHQRLTLTAKGN 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P +L+MTATPIPRTLVLTS GD+D+SKIT+KP GR+PI T  IP  RI+E+IER+   L
Sbjct: 421 KPDMLVMTATPIPRTLVLTSYGDMDVSKITDKPIGRQPITTATIPSERINELIERIATAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            + +K YWICP +EE       S+  RF SL + F + + +IHG+MS  +KE+V+ SFKN
Sbjct: 481 QKEEKIYWICPLVEESTTLELTSIENRFASLQKRFGAHVGMIHGKMSTDEKEAVITSFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+ATTVIEVGID+ DASII+IE+AEHFGLAQLHQLRGRVGRG + SSCILLY  P
Sbjct: 541 ANICILVATTVIEVGIDIPDASIIVIEHAEHFGLAQLHQLRGRVGRGNKKSSCILLYKSP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+K +  RL++++NTEDGF IAEEDL+ R EGE+LG +QSGMP+F IA   +H  LL IA
Sbjct: 601 LTKTAEARLNIMRNTEDGFKIAEEDLRLRGEGELLGTRQSGMPEFYIANLAVHSDLLLIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +++A   L +DP+L+S +GQ++R+LLYL+  ++A Q IRAG
Sbjct: 661 KRNAHLFLKRDPNLSSEQGQAVRLLLYLFGRDDALQLIRAG 701


>gi|163868513|ref|YP_001609722.1| ATP-dependent DNA helicase RecG [Bartonella tribocorum CIP 105476]
 gi|161018169|emb|CAK01727.1| ATP-dependent DNA helicase [Bartonella tribocorum CIP 105476]
          Length = 702

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/702 (47%), Positives = 461/702 (65%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           M PS L PLF  + T  G+  K    L+K++N      E   IDLL   P S IDR  RP
Sbjct: 1   MPPSLLTPLFNSIRTLSGITPKVYGLLTKLLNVNPTQREATLIDLLQLMPHSVIDRRMRP 60

Query: 60  KISEISEERIVTITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I    E   VT+   I QH    +   + PY+++ ++ TG+I L+FF+ +   LK    
Sbjct: 61  SIDCAKEGETVTLEIVIDQHQPPPRGHNKIPYRVIAHNQTGKINLVFFHAQPLWLKKQLP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG+K+ V+GK++     + M HP +I  + Q    PLIE VY    GL+    ++ I  A
Sbjct: 121 EGKKVIVSGKVEWFNGLLSMAHPDHIAPSEQSNQIPLIEPVYPSTAGLAAKTLRRAIQHA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L  +P+LPEWI++++ ++++F S + A   IH P    D    S AR+RLAYDELLA Q+
Sbjct: 181 LDFIPLLPEWIDENVKKQQNFSSFSVALRRIHAPINPGDLSLESTARKRLAYDELLACQL 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + K  +G      G   +K+L  +PF  T  Q  A++DI  D++    MLR+L
Sbjct: 241 ALGLVRLKTKSLVGASRPSTGIYTKKLLNVLPFQLTTGQIKAVEDIANDLASPEPMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVG+GKT+VAL+AMA   E  GQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 301 QGDVGAGKTVVALMAMAQIAENSGQSALMAPTEVLARQHFATIAPLAEKIGLQTTLLTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L  I  GQ  I+IGTHAL QDS+ Y  L L I+DEQHRFGV QR+ LT+K 
Sbjct: 361 EKGKLRTNILNDILSGQVSIVIGTHALIQDSVTYNNLALTIIDEQHRFGVHQRIALTEKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P +L+MTATPIPRTLVLT+ GD+D+SKITEKP GR+PI T ++ + RI E+IER+ + 
Sbjct: 421 DKPDMLVMTATPIPRTLVLTAFGDMDVSKITEKPIGRQPITTAMLSLKRIHELIERIAIA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L +G+K YWICP +EE K  +  S+  RF  LHE F + + +IHG+MS  +KE+ M SFK
Sbjct: 481 LDKGEKLYWICPLVEESKALDLTSIENRFAFLHERFGTHVGMIHGKMSTAEKETAMASFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++L+ATTVIEVG+D+ DASIIIIE+AEHFGL+QLHQLRGRVGRG++ SSCILLY  
Sbjct: 541 CGNTRILVATTVIEVGVDIPDASIIIIEHAEHFGLSQLHQLRGRVGRGDKKSSCILLYKE 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL+K + TRL++++NTEDGF IAEED + R EGE+LG KQSG+P+F IA   +H  LL I
Sbjct: 601 PLTKTAATRLNIIRNTEDGFEIAEEDWRLRGEGELLGTKQSGVPEFHIANLAVHSDLLSI 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA+  L +DP L+S +GQ++R+LLYL+++++A + +RAG
Sbjct: 661 ARKDARLFLQRDPYLSSEQGQALRLLLYLFRHDDAARLLRAG 702


>gi|319407173|emb|CBI80812.1| ATP-dependent DNA helicase [Bartonella sp. 1-1C]
          Length = 701

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/701 (47%), Positives = 453/701 (64%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS LNPLF P++T  GV  K     +K++N      E   IDLL   P S IDR  +P
Sbjct: 1   MRPSLLNPLFTPINTLAGVNTKICSLFAKVLNINLGQREPTLIDLLRLMPHSVIDRRKQP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
            I    E  IVT+   I QH       R PY+++  D TG I L+FF+ +   L+    +
Sbjct: 61  NIFSAQEGDIVTLEIIIDQHIPPTNHSRAPYRVIGYDQTGIINLIFFHAQRSWLEKQLPK 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G+K+ V+GK+++ K ++ M+HP +I    Q    P IE +Y    GLS    ++   +AL
Sbjct: 121 GKKVVVSGKVERFKGQLSMIHPDHILFYEQLDQMPFIEPIYPSTAGLSTKTLRRATKKAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             +P LPEWIE+ + ++ +F S A +   IH+P    D    S AR+RLAYDE  A QIA
Sbjct: 181 DSIPSLPEWIEESIKKEHNFSSFAVSLRRIHDPINPDDLTLESTARKRLAYDEFFANQIA 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R + K   G      G   +K+L  +PF  T  Q  AIKDI  D++    MLR+LQ
Sbjct: 241 LGLVRLETKSLSGTSRPPTGTYTKKLLEILPFQLTNGQIKAIKDIENDLASPEPMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VAL+A+A   E  GQ+ +M P  +LA+QH+  I    +   +   ++TG  
Sbjct: 301 GDVGTGKTVVALMAIAQIAENSGQSALMVPTEVLARQHFATITPLAEKIGLQTALLTGRE 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + L+ I  G+A IIIGTHAL Q+ + Y  L L I+DEQHRFGVQQRL LT K  
Sbjct: 361 KGKVRARILDTILSGEASIIIGTHALIQEHVTYNNLALAIIDEQHRFGVQQRLTLTAKGN 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P +L+MTATPIPRTL+LTS GD+D SKIT+KP GR PI T  IP  RI+E+IER+   +
Sbjct: 421 KPDMLVMTATPIPRTLILTSYGDMDASKITDKPIGRHPITTATIPSERINELIERIATAV 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            + +K YWICP +EE K     S+  RF SL + F + + +IHG+MS  +KE+VM SFK 
Sbjct: 481 QKEEKIYWICPLVEESKTLQLTSIESRFTSLQKRFGTRVGMIHGKMSTDEKETVMTSFKK 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+ATTVIEVG+D+ DASII+IE+AEHFGLAQLHQLRGRVGRG + SSCILLY  P
Sbjct: 541 ANICILVATTVIEVGVDIPDASIIVIEHAEHFGLAQLHQLRGRVGRGNKKSSCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+K +  RL++++NTEDGF IAEEDL+ R EGE+LG +QSGMP+F IA   +H +LL IA
Sbjct: 601 LTKTAEARLNIMRNTEDGFTIAEEDLRLRGEGELLGTRQSGMPEFYIANLAVHRNLLLIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +K+A  +L +DP+L+S +GQ++R+LLYL+  ++A Q +RAG
Sbjct: 661 KKNAHLLLQRDPNLSSEQGQAVRLLLYLFGRDDALQLLRAG 701


>gi|121602903|ref|YP_989053.1| ATP-dependent DNA helicase RecG [Bartonella bacilliformis KC583]
 gi|120615080|gb|ABM45681.1| ATP-dependent DNA helicase RecG [Bartonella bacilliformis KC583]
          Length = 702

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/699 (46%), Positives = 465/699 (66%), Gaps = 2/699 (0%)

Query: 4   SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNAN-ETRFIDLLFYHPSSFIDRHYRPKIS 62
           + +NPL + + T  G+  K    L+K++N   A  E + IDLL   P S IDR  +P I+
Sbjct: 4   NLINPLLSSIRTLPGITPKICALLAKVLNIDLAQREPQLIDLLQLMPHSVIDRRMQPSIA 63

Query: 63  EISEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
              E +IVT+   I QH       K  PY+++ +D TG+I L+FF+ ++  LK    EG+
Sbjct: 64  CAQEGQIVTLKITIDQHQPPPTNLKSLPYRVIGHDETGQINLVFFHARSSWLKTQLPEGK 123

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
            + V+GKI++   ++ MVHP +I  + +    PLIE +Y    GLS    ++++  AL  
Sbjct: 124 TVIVSGKIERFNKQLSMVHPDHIAFSEEFNQIPLIEPIYPSTAGLSAKTLRRVVQNALEH 183

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P LPEWI++ + ++++F S + A   IH+P         S AR+RLAYDELLA Q+AL 
Sbjct: 184 VPFLPEWIDESVKKQQNFSSFSVALRCIHDPIDPCHLSLESTARKRLAYDELLACQLALG 243

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L+R Q K   G+     G   +K+L+++PF  T  Q+  IK+I  D++    MLR+LQGD
Sbjct: 244 LVRLQTKSLTGVSRLSTGTYTEKLLKSLPFQLTNGQKKTIKEIANDLASPEPMLRLLQGD 303

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKT+VAL+A+A   E  GQ+ +MAP  +LA+QH+  I    +   +   ++TG    
Sbjct: 304 VGTGKTVVALMAIAQIAENLGQSALMAPTEVLARQHFSTIAPLAEKIGLQTTLLTGREKG 363

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R   L  I+ G A IIIGTHAL Q+++ Y+ L L I+DEQHRFGV QRL LT K   P
Sbjct: 364 KTRTNILNDISSGHASIIIGTHALIQENVTYHNLSLAIIDEQHRFGVHQRLALTAKGHKP 423

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L+MTATPIPRTLVLT+ GD+D+SKITEKP GR+PI T  +P+ RI+E+IER+   L +
Sbjct: 424 DMLVMTATPIPRTLVLTTFGDMDVSKITEKPIGRQPITTATLPLERINELIERIASALEK 483

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           G+K YWICP +EE       S+  RF +L+E F   + +IHG+MS  +K++ M SFK G 
Sbjct: 484 GEKLYWICPLVEESTTLQLTSIENRFATLYEQFGDCVGMIHGKMSTNEKDAAMASFKCGK 543

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L+ATTVIEVG+D+ DASII+IE+AEHFGL+QLHQLRGRVGRGE+ SSCILLY  PL+
Sbjct: 544 TRILVATTVIEVGVDIPDASIIVIEHAEHFGLSQLHQLRGRVGRGEKKSSCILLYKGPLT 603

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           K +  RL+++++TEDGF+IAEEDL+ R EGE+LG +QSGMP+F IA   +H  LL +ARK
Sbjct: 604 KTAAARLNIMRSTEDGFIIAEEDLRLRGEGELLGTRQSGMPEFHIANLAVHSDLLSMARK 663

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           DA+  L +D  L+S RG+++R+LLYL++ + A Q +RAG
Sbjct: 664 DARLFLQRDATLSSERGKALRLLLYLFKRDYAIQLLRAG 702


>gi|110634056|ref|YP_674264.1| ATP-dependent DNA helicase RecG [Mesorhizobium sp. BNC1]
 gi|110285040|gb|ABG63099.1| ATP-dependent DNA helicase RecG [Chelativorans sp. BNC1]
          Length = 702

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/702 (46%), Positives = 478/702 (68%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANET-RFIDLLFYHPSSFIDRHYRP 59
           MRPS L+PLFAP +   G+G + +  ++ ++    AN   R  DLLF  P S IDR  RP
Sbjct: 1   MRPSLLDPLFAPATALEGIGSRTAGLIANVVPADLANRPLRVGDLLFVLPHSLIDRTNRP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
           +++   +  IVT+   + +H      K+  PY++   D TG+ITL FF+     L+  F 
Sbjct: 61  EVAYAPQGAIVTLRLTVDRHQPPPRGKKNVPYRVFAFDETGQITLTFFHAHPAYLEKQFP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G ++ V+G+++    R  MVHP YI   S+  + P +E VY L  GLS  + ++ I +A
Sbjct: 121 VGSEVLVSGRMEWFNGRPSMVHPDYIVPASEAASLPPLEPVYPLTAGLSPKVLRRAIAQA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           ++R+P +PEW ++ L  +  F S   A + +H+P+  +D    +   +RLAYDELLA Q+
Sbjct: 181 VARVPDMPEWQDEALKTQLGFSSFRAALDRLHDPKNVEDISPENAPWQRLAYDELLASQL 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +L L+R + +K  G P+N +G +A +I   +P+S T SQE A+ DI  D+++  RMLR+L
Sbjct: 241 SLALVRARTRKLAGRPLNGDGMLAARIKHALPYSLTPSQERAVADIFADLAKDERMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVG+GKT+VAL+AMA A EAGGQ+ +MAP  +LA+QH+  +    +   +   ++TG 
Sbjct: 301 QGDVGAGKTVVALLAMARAAEAGGQSALMAPTELLARQHFATVAPLAEKAGLKAALLTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R++ L RIA G+   +IGTHALFQ+++Q++ L+L I+DEQHRFGV QRL +  K 
Sbjct: 361 EKGRERQEILARIASGEVSFVIGTHALFQETVQFHDLVLTIIDEQHRFGVHQRLAINAKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            AP +L+MTATPIPRTLVL++ GD+D+S++TEKPAGRKPI+TV +P +R+DE+IERL+  
Sbjct: 421 DAPDMLVMTATPIPRTLVLSAFGDMDVSRLTEKPAGRKPIRTVTMPTDRLDELIERLQNA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           + EG+K YWICP +EE       S  +RF SL   F  ++ ++HGRM+  +K+  M +FK
Sbjct: 481 IVEGQKIYWICPLVEESDAIELTSAEDRFASLKHVFGHAVGLVHGRMAAREKDEAMRAFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G  ++L+ TTV+EVG+DV DA+II+IE+AE FGLAQLHQLRGRVGR ++ SSC+LLY P
Sbjct: 541 DGQTRILVGTTVVEVGVDVPDATIIVIEHAERFGLAQLHQLRGRVGRSDKPSSCVLLYKP 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL++L+ TEDGFLI+EEDLK R EG++LG +QSG P F +A+ E H  LL  
Sbjct: 601 PLGEVAKRRLAILRETEDGFLISEEDLKLRGEGDLLGTRQSGTPGFQVARLEFHAELLAT 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR DA+ +L++DP+L S RG+++R+LLYL+  +EA + +RAG
Sbjct: 661 ARDDARLLLSRDPELASERGRALRVLLYLFGKDEAVRLLRAG 702


>gi|319404154|emb|CBI77747.1| ATP-dependent DNA helicase [Bartonella rochalimae ATCC BAA-1498]
          Length = 701

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/701 (47%), Positives = 451/701 (64%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNAN-ETRFIDLLFYHPSSFIDRHYRP 59
           M PS LNPLF  ++T  GV  K     +K++N      E   IDLL   P S IDR  +P
Sbjct: 1   MHPSLLNPLFTSINTLAGVNTKICSLFAKVLNINLVQREPTLIDLLRLMPHSVIDRRKQP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
            IS   E  IVT+   I QH       R PY+++  D TG I L+FF+ +   L+    +
Sbjct: 61  NISFAQEGDIVTLEIIIDQHIPPTNHSRAPYRVIGYDRTGTINLIFFHAQRSWLEKQLPK 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G+K+ V+GK+++ K ++ M+HP +I    Q    P IE +Y    GLS    ++   +AL
Sbjct: 121 GKKVIVSGKVERFKGQLSMIHPDHILFYEQLDQMPFIEPIYPSTAGLSTKTLRRATKKAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             +P LPEWIE+ + ++ +F S A +   IH+P    D    S AR+RLAYDE  A QIA
Sbjct: 181 DFIPSLPEWIEESIKKEHNFSSFAVSLRRIHDPINPDDLTLESTARKRLAYDEFFANQIA 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R + K   G      G   +K+L  +PF  T  Q  AIKDI  D++    MLR+LQ
Sbjct: 241 LGLVRLETKSLSGTSRPPTGAYTKKLLEILPFQLTNGQIKAIKDIENDLASPEPMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VAL+A+A   E  GQ+ +M P  +LA+QH+  I    +   +   ++TG  
Sbjct: 301 GDVGTGKTVVALMAIAQIAENSGQSALMVPTEVLARQHFATIAPLAEKIGLQTALLTGRE 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R K L+ I  G+A IIIGTHAL Q+ + Y  L L I+DEQHRFGV QRL LT K  
Sbjct: 361 KGKVRAKILDTILSGEASIIIGTHALIQEHVTYNNLALAIIDEQHRFGVHQRLTLTAKGN 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P +L+MTATPIPRTL+LTS GD+D SKIT+KP GR PI T  IP  RI+E+IER+   +
Sbjct: 421 KPDMLVMTATPIPRTLILTSYGDMDASKITDKPIGRNPITTATIPSERINELIERIATAV 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            + +K YWICP +EE K     S+  RF SL + F + + +IHG+MS  +KE+VM SFKN
Sbjct: 481 QKEEKIYWICPLVEESKTLQLTSIENRFASLQKRFGTRVGMIHGKMSTDEKETVMASFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+ATTVIEVG+D+ DASII+IE+AEHFGLAQLHQLRGRVGRG + SSCILLY  P
Sbjct: 541 ANICILVATTVIEVGVDIPDASIIVIEHAEHFGLAQLHQLRGRVGRGNKKSSCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+K +  RL++++NTEDGF IAEEDL+ R EGE+LG +QSGMP+F IA   +H +LL IA
Sbjct: 601 LTKTAEARLNIMRNTEDGFTIAEEDLRLRGEGELLGTRQSGMPEFYIANLAVHRNLLLIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +K+A  +L +DP+L+S +G ++R+LLYL+  ++A Q +RAG
Sbjct: 661 KKNANLLLQRDPNLSSEQGYAVRLLLYLFGRDDALQLLRAG 701


>gi|319408652|emb|CBI82307.1| ATP-dependent DNA helicase [Bartonella schoenbuchensis R1]
          Length = 702

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/702 (48%), Positives = 462/702 (65%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           M  +  N     + T  GV +K    L+K++N   + +E   IDLL   P S IDR  RP
Sbjct: 1   MYSNLFNLFSTSIRTLPGVNQKVYPLLAKVLNTNLSQHEPTIIDLLQLMPHSVIDRRMRP 60

Query: 60  KISEISEERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E +IVT+   I QH        R PY+++  D TG I L+FF+ +   L+    
Sbjct: 61  DIAFAPEGKIVTLEIIIDQHRPPLNSNNRSPYRVIGYDKTGSINLVFFHAQRSWLERQLP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG+K+ V+GK+++   ++ +VHP +I  + Q    PLIE +Y    GLS    K+ +  A
Sbjct: 121 EGKKVIVSGKVERFNGQLSIVHPDHIAPSEQLNQMPLIEPIYPSTAGLSARALKRAMQGA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L R+P+LPEWIEK+L +++ FPS ++A + IH P    D    S AR+RLAYDELLAGQ+
Sbjct: 181 LERIPLLPEWIEKNLKKQQQFPSFSDALHCIHAPIDPNDLALKSAARQRLAYDELLAGQL 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + K   G      G   +K+L ++PF  T +Q+ AI+DI  D++    MLR+L
Sbjct: 241 ALGLVRLKTKSLSGASRPPTGVYTEKLLESLPFQLTNAQKQAIQDIASDLASPEPMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVG+GKT+VAL+AMA   E  GQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 301 QGDVGTGKTVVALMAMAQIAENSGQSALMAPTEVLARQHFTMIAPLAEKIGLKTVLLTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L  I  G+  IIIGTHAL Q ++ Y  L L I+DEQHRFGV QRL LT K 
Sbjct: 361 EKGKSRVNILNDILSGKISIIIGTHALIQKNVTYNNLALTIIDEQHRFGVNQRLALTAKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P +L+MTATPIPRTLVLT+ GD+D+SKITEKP GRKPI T  +P+ RIDE+IER+ V 
Sbjct: 421 HKPDILVMTATPIPRTLVLTAFGDMDVSKITEKPIGRKPITTATLPLERIDELIERIAVA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L +G+K YWICP +EE +     S+  RF  LH+ F + + +IHG+MS   K + + SFK
Sbjct: 481 LEKGEKLYWICPLVEESENFQLTSIENRFAILHKRFGACVGMIHGKMSTTKKNAAIASFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L+ATTVIEVG+D+ DASIIIIE+AEHFGL+QLHQLRGRVGRGE+ SSCILLY  
Sbjct: 541 SGETCILVATTVIEVGVDIPDASIIIIEHAEHFGLSQLHQLRGRVGRGEKKSSCILLYKA 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL+K +  RL++++NTEDGF IAEEDL+ R EGE+LG +QSGMP+F IA    H  LL +
Sbjct: 601 PLTKTAAMRLNIIRNTEDGFKIAEEDLRLRGEGELLGTRQSGMPEFHIANLTAHHKLLLM 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA   L  D DL+S RGQ++R+LLYL+++++A Q +R+G
Sbjct: 661 ARKDACLFLQHDSDLSSERGQALRLLLYLFRHDDAIQLLRSG 702


>gi|90419665|ref|ZP_01227575.1| ATP-dependent DNA helicase RecG [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336602|gb|EAS50343.1| ATP-dependent DNA helicase RecG [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 700

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/701 (47%), Positives = 465/701 (66%), Gaps = 2/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPS L+PLFA ++T  GVG K +  L  ++   N  E R  DLLF+ PS  IDR  R +
Sbjct: 1   MRPSILDPLFAAVTTLEGVGPKVAAQLQTLL-VANGAEVRVRDLLFHLPSGLIDRRKRAE 59

Query: 61  ISEISEERIVTITGYISQHSS-FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   E  IVT+T  I +H +  + QK  PY++   D TGEI L +F  ++  L+ +   
Sbjct: 60  IATAPEGGIVTLTVRIDRHQAPGRGQKSVPYRVFAQDETGEIALTYFRGQSAWLEKLLPV 119

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G  + V+G+++    R  MVHP ++    +     L+E VY +  GLS  L +K I E L
Sbjct: 120 GETMIVSGRVEWFNGRPSMVHPDFVATLEEAETLSLVEPVYPMTAGLSPKLLRKAIAETL 179

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            +LP L EWI+  ++ ++++P I  A   +H+P    D     PA  RLAYDE LA Q+A
Sbjct: 180 EKLPALDEWIDPAVVAREAYPGIGSALRRLHDPEDETDIAHAGPAWSRLAYDEYLASQLA 239

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L R++ KK  G P+   G++A  +   +PF+ T+ QE+AI +I  DM+  +RMLR+LQ
Sbjct: 240 LALSRQRMKKARGRPLVGTGRMAGLLRAALPFTLTEGQEAAIAEIHTDMAAPDRMLRLLQ 299

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+AMAAA EAG Q+ ++AP  ILA+QH++ + K  +   + + ++TG  
Sbjct: 300 GDVGSGKTVVALMAMAAAAEAGAQSALLAPTEILARQHHDGLSKLCEAAGLSIVLLTGRD 359

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   L  IA G+  I++GTHALFQ+ + Y  L LV+VDEQHRFGV QRL LT K  
Sbjct: 360 TGRARAAKLAAIAAGEVQIVVGTHALFQEGVDYADLGLVVVDEQHRFGVHQRLSLTAKGR 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L+MTATPIPRTLVL + GD+D+S+++ KPAGRKPI TV +P+ R+ +++ R    +
Sbjct: 420 GADLLVMTATPIPRTLVLAAFGDMDVSRLSGKPAGRKPITTVAVPMERLSDIVGRAGSAM 479

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G++ YW+CP +EE ++S+  +  ERF  L  HF   I ++HGRMS  +K++ M  FK 
Sbjct: 480 DAGERLYWVCPLVEESEKSDLMAAEERFRQLQAHFGDRIGLVHGRMSGEEKDAAMADFKA 539

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +L++ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG + SSC+LLY  P
Sbjct: 540 GRTQLVVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGSKASSCVLLYRAP 599

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + +  R+ V++ TEDGF IAEEDLK R EG++LG +QSGMP F IA  E H  L+E+A
Sbjct: 600 LGETASARIKVMRETEDGFRIAEEDLKLRGEGDLLGTQQSGMPYFRIASMEHHARLMEVA 659

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R DA+ ILT+DP+LTS RG+++R LLYL+  +EA + +R+G
Sbjct: 660 RDDARMILTRDPELTSPRGEALRALLYLFGKDEAIRLLRSG 700


>gi|254504403|ref|ZP_05116554.1| ATP-dependent DNA helicase RecG [Labrenzia alexandrii DFL-11]
 gi|222440474|gb|EEE47153.1| ATP-dependent DNA helicase RecG [Labrenzia alexandrii DFL-11]
          Length = 730

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/700 (45%), Positives = 456/700 (65%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L+PLFAP+ST  G+G K +  ++ ++      E    DLLF+ P S IDR ++P 
Sbjct: 31  MRPPVLDPLFAPVSTLPGIGPKIAKLVAGLVGGQPDREATVADLLFHIPHSLIDRRHKPG 90

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+      IVT+   I +HS+     + PY+I   D TG+IT +FF+ + + L+  F EG
Sbjct: 91  IAYSENGDIVTLDVTIGRHSAPPRHSKAPYRISAYDETGQITFVFFHSRQDWLQKTFPEG 150

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            +  V+GK++   +R  MVHP Y     +    P IE +Y L  GL+    +K +  A  
Sbjct: 151 ERRIVSGKVEWFNDRPQMVHPDYSVSPEEADQMPPIEPIYPLTAGLASKTLQKAMKAACE 210

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           ++P LPEW+ +  L +  +P  AEA   +H P+  +D E  SP  +R+AYDELLA Q+AL
Sbjct: 211 KIPHLPEWLNEPYLHQTGWPDFAEALKTLHAPKGRQDVEPQSPFMQRVAYDELLASQLAL 270

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R   +   GI    +GK+   ++  +PF  T SQ+ AIKDI  D+++  RMLR+LQG
Sbjct: 271 ALVRANMRTLGGIERKPDGKLQAAVINALPFELTDSQKDAIKDINADLAKPTRMLRLLQG 330

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG+GKT+VAL  +A  ++ G Q  +MAP  ILA+QHY  +    +   I + ++TG   
Sbjct: 331 DVGAGKTVVALATLAQVIQTGAQGGLMAPTEILARQHYASMAPICEQAGIRMALMTGKDT 390

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           Q  RR   E++  G+  +++GTHALFQ S+ +  L +V+VDEQHRFGV QRL L+ K   
Sbjct: 391 QKERRLLQEKLDAGEIDLVVGTHALFQGSVTFKDLGMVVVDEQHRFGVHQRLALSSKGRG 450

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+MTATPIPRTLVLT  GD+D+SK+  KPAGRKPIKTV + ++R++E+I R+     
Sbjct: 451 VDVLVMTATPIPRTLVLTCFGDMDVSKLLGKPAGRKPIKTVSVSLDRLEEIIGRVGAATR 510

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           EG+K YW+CP +EE ++ +  +V +R   L       ++++HGRMS  +K++ MD FK+G
Sbjct: 511 EGQKVYWVCPLVEESEKIDLAAVEDRHRVLEHALGERVSLVHGRMSAAEKDAAMDDFKSG 570

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY  PL
Sbjct: 571 RTRVLVATTVIEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKGPL 630

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + +  RL++++ T DGFLIAEEDL+ R  GEILG +QSG P F IA+ + H  L+E+AR
Sbjct: 631 GETAGARLNIMRETNDGFLIAEEDLRLRGGGEILGTRQSGTPGFRIARADEHADLMEVAR 690

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ IL  DPDL S RG ++R LLYL+  + A Q +RAG
Sbjct: 691 DDARLILETDPDLKSKRGAALRCLLYLFGRDAAIQLLRAG 730


>gi|163793170|ref|ZP_02187146.1| RecG-like helicase [alpha proteobacterium BAL199]
 gi|159181816|gb|EDP66328.1| RecG-like helicase [alpha proteobacterium BAL199]
          Length = 693

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/699 (42%), Positives = 459/699 (65%), Gaps = 7/699 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFA +   +GVG +Y+  + K      A   + +DLL++ PS  +DR   P 
Sbjct: 1   MRPELLFPLFAEVGRIKGVGPRYAKLIEK------AAGPQIVDLLWHLPSGVVDRRPSPP 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E  + R+ T+T  + +H      +R PY+++ +DG  +I L++F+ K + L+ +   G
Sbjct: 55  IPEAPDGRVATLTLTVLRHQPPP-GRRGPYRVVCSDGHADIDLVYFHAKGDWLEKLLPVG 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+G++++ + R  M HP ++    +     ++E  Y    GL +   ++ +  AL 
Sbjct: 114 EVRVVSGRLERFQGRAQMAHPEHVVPEEEAEEIRIVEPTYPSTEGLPMRTLRRAVEGALE 173

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           R+P L EW+   LL ++++P   EA    H P  A+D E  +P R RLAYDE+L+ Q+AL
Sbjct: 174 RIPTLDEWMSPSLLAQRAWPRWDEAVRRAHAPEDARDLEPDAPTRIRLAYDEILSNQLAL 233

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R + K++ G  ++ +G + + + + +PFS T +Q  A+ +I  DM+   RMLR+LQG
Sbjct: 234 ALVRARMKRQKGRSVHGDGSLREAVAKALPFSLTGAQRMALAEIEADMAADTRMLRLLQG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVAL+AM  AVE G QA +MAP  ILA+QH+  I+   +   + +EI+TG   
Sbjct: 294 DVGSGKTLVALMAMLNAVECGAQAALMAPTEILARQHFATIEPLARQAGVRIEILTGRDR 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R   + RIA G A I++GTHALFQ+ +++  L + I+DEQHRFGV QR+ L  K  A
Sbjct: 354 GKTRAAIVGRIAEGSAKIVVGTHALFQEGVEFRDLAVAIIDEQHRFGVHQRMSLGGKGQA 413

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              L+MTATPIPRTL++T+ GD+D+S++TEKP GR+PI T  + ++R+ EV++ +   L 
Sbjct: 414 VDTLVMTATPIPRTLLMTAYGDLDVSRLTEKPPGRQPIDTRTVALDRLGEVVDGVARKLD 473

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +G K YW+CP +EE ++ +  +  ER ++L   F   + ++HGR+   +K++VMD+FKNG
Sbjct: 474 QGAKVYWVCPLVEESEKLDVAAAEERASTLRRRFGDRVGVLHGRLKGPEKDAVMDAFKNG 533

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
           T  LL+ATTVIEVG+DV +A++++IE+AE FGLAQLHQLRGR+GRG++ S+C+LLY  PL
Sbjct: 534 TVDLLVATTVIEVGVDVPEATVMVIEHAERFGLAQLHQLRGRIGRGDKASTCLLLYSSPL 593

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++  + RL+V+++TEDGFLIAEEDL+ R  GE+LG +QSG+P F +A P  H SL  +AR
Sbjct: 594 TETGHARLAVMRDTEDGFLIAEEDLRLRGAGEVLGTRQSGLPTFRMADPAAHASLFPVAR 653

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
            DA+ +L QDP+L   RG++ R LLYL++ + A +++R 
Sbjct: 654 DDARLLLNQDPELEGPRGKAARTLLYLFERDAAVRYLRG 692


>gi|240850745|ref|YP_002972145.1| ATP-dependent DNA helicase RecG [Bartonella grahamii as4aup]
 gi|240267868|gb|ACS51456.1| ATP-dependent DNA helicase RecG [Bartonella grahamii as4aup]
          Length = 702

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/702 (47%), Positives = 462/702 (65%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           M PS L PLF  + T  G+  K    L+K++N      E   IDLL   P S IDR  RP
Sbjct: 1   MPPSLLTPLFNSIRTLSGITPKVYGLLTKLLNVNPTQREATLIDLLQLMPHSVIDRRMRP 60

Query: 60  KISEISEERIVTITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+ ++E   VT+   I QH    +   + PY+++ +D TG+I L+FF+ +   LK    
Sbjct: 61  NIACVTEGDTVTLEIIIDQHQPPPRGHNKIPYRVIAHDQTGKINLVFFHAQPLWLKKQLP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG+K+TV+GK++    +  M HP YI  + Q    PLIE VY    GL+    ++ I  A
Sbjct: 121 EGKKVTVSGKVEWFNGQFSMAHPDYIAPSEQSNQIPLIEPVYPSTAGLTAKTLRRAIQNA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L  +P+LPEWI++++ ++++F S + A   IH P    D    S AR+RLAYDELLA Q+
Sbjct: 181 LDFIPLLPEWIDENVKKQQNFSSFSVALRRIHAPIDPNDLSLESTARKRLAYDELLACQL 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + K  +G      G   +K+L  +PF  T  Q+ A++DI  D++    MLR+L
Sbjct: 241 ALGLVRLKTKSLVGTSRPSTGIYTKKLLNVLPFQLTTGQKKAVEDIANDLASPEPMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVG+GKT+VAL+AMA   E  GQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 301 QGDVGAGKTVVALMAMAQIAENSGQSALMAPTEVLARQHFSTIAPLAEKVGLQTTLLTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L  I  GQ  IIIGTHAL Q+SI Y  L L I+DEQHRFGV QR+ LT+K 
Sbjct: 361 EKGKLRINILNDIQSGQVSIIIGTHALIQNSITYNNLALTIIDEQHRFGVHQRIALTEKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P +L+MTATPIPRTLVLT+ GD+D+SKITEKP GR+PI T ++ + R+ E+IER+ + 
Sbjct: 421 NKPDMLVMTATPIPRTLVLTAFGDMDVSKITEKPMGRQPITTAMLSLKRLHELIERIAIA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L +G+K YWICP +EE    +  S+  RF  LHE F + + +IHG+MS   KE+ M SFK
Sbjct: 481 LEKGEKLYWICPLVEESTALDLTSIENRFAFLHERFGAHVGMIHGKMSTEKKEAAMASFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++L+ATTVIEVG+D+ DASIIIIE+AEHFGL+QLHQLRGRVGRG + SSCILLY  
Sbjct: 541 CGNTRILVATTVIEVGVDIPDASIIIIEHAEHFGLSQLHQLRGRVGRGNKKSSCILLYKD 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL+K + TRL++++NTEDGF IAEED + R EGE+LG KQSG+P+F IA   +H  LL +
Sbjct: 601 PLTKTAATRLNIIRNTEDGFEIAEEDWRLRGEGELLGTKQSGVPEFHIANLAVHSDLLSM 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA+  L +DP L+S +GQ++++LLYL+ +++A + +RAG
Sbjct: 661 ARKDARLFLQRDPHLSSQQGQALQLLLYLFGHDDATRLLRAG 702


>gi|49475736|ref|YP_033777.1| ATP-dependent DNA helicase recG [Bartonella henselae str.
           Houston-1]
 gi|49238543|emb|CAF27779.1| ATP-dependent DNA helicase recG [Bartonella henselae str.
           Houston-1]
          Length = 702

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/702 (48%), Positives = 458/702 (65%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINC-GNANETRFIDLLFYHPSSFIDRHYRP 59
           M P  + PLF  +    G+  K    L+K++N      E   IDLL   P S IDR  RP
Sbjct: 1   MLPDLIRPLFTSVRILPGMSPKIYGLLAKVLNINATQREPTIIDLLQLMPYSVIDRRMRP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E   VT+   I QH S  + + R PY++  +D TG+I L+FF+ +   LK    
Sbjct: 61  NIAFAQEGNTVTLEIIIDQHHSPPIGRNRLPYRVSAHDQTGKINLVFFHAQPPWLKKQLP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG+K+ V+GK+++   ++ MVHP +I  + Q    PLIE +Y    GLS    ++ I  A
Sbjct: 121 EGKKVIVSGKVERFNGQLSMVHPDHIAPSKQSNQMPLIEPIYPSTAGLSAKTLRRTIQNA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L  +P+LPEWIE+ + ++++F S + A   IH P    D    S AR+RLAYDELLA Q+
Sbjct: 181 LEYIPLLPEWIEESVKKQQNFSSFSVALRRIHAPIDPDDLALESTARKRLAYDELLACQL 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LMR + K  +G      G   +K+L+ +PF  T  Q+ AI+DI  D++    MLR+L
Sbjct: 241 ALGLMRLKTKSLVGTSRPPTGTYTEKLLKILPFQLTNGQKKAIQDIANDLASPEPMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVG+GKT+VAL+AMA   E  GQ+ +M P  +LA+QH+  I    +   +   ++TG 
Sbjct: 301 QGDVGAGKTVVALMAMAQIAENRGQSALMTPTEVLARQHFATIAPLAEKIGLQTVLLTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L  I+  QA IIIGTH L Q+++ Y  L L I+DEQHRFGV QRL LT K 
Sbjct: 361 EKGKLRTNILNNISSSQASIIIGTHTLIQNNVTYNNLSLAIIDEQHRFGVNQRLALTAKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P +L+MTATPIPRTLVLT+ GD+D+SKITEKP GR+PI T I+ + RIDE+IER+ V 
Sbjct: 421 HKPDMLVMTATPIPRTLVLTAFGDMDVSKITEKPMGRQPITTAILSLKRIDELIERIAVA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L +G+K YWICP +EE       S+  RF  L E F +S+ +IHG+MS   KE+ M SFK
Sbjct: 481 LEKGEKLYWICPLVEESITLELTSIESRFAMLQERFGTSVGMIHGKMSTDKKEAAMASFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTVIEVG+D+ DASIIIIE+AEHFGL+QLHQLRGRVGRGE+ SSCILLY  
Sbjct: 541 CGNIGILVATTVIEVGVDIPDASIIIIEHAEHFGLSQLHQLRGRVGRGEKKSSCILLYKD 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL+K + TRL+++++TEDGF IAEED + R EGE+LG +QSGMP+F IA   +H  LL +
Sbjct: 601 PLTKMAATRLNIIRSTEDGFKIAEEDWRLRGEGELLGTRQSGMPEFHIANLAVHGDLLLL 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR+DA+  L +DP L+S +GQ++R+LLYL+  ++A + +RAG
Sbjct: 661 ARRDARLFLQRDPHLSSEQGQALRLLLYLFGRDDATRLLRAG 702


>gi|169797572|ref|YP_001715365.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AYE]
 gi|90265357|emb|CAJ77039.1| ATP-dependent DNA helicase [Acinetobacter baumannii]
 gi|169150499|emb|CAM88402.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AYE]
          Length = 616

 Score =  638 bits (1646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/578 (52%), Positives = 414/578 (71%)

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           I V+GK++    R  MVHP +I       + PLIE VY L  GLS     + + +AL+R+
Sbjct: 39  IRVSGKLEWFNGRASMVHPDHIAPIDGSDDLPLIEPVYPLTAGLSPKTLARAMRDALTRI 98

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
           P LPEW +K L+Q+++FPS  +A + +H P + +D    SP+R RLAYDE LAGQ+AL L
Sbjct: 99  PDLPEWQDKTLMQRENFPSFTQALHHLHLPEEPEDIAQDSPSRRRLAYDEFLAGQMALAL 158

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R + K+  G P+N  GKI  +IL N+P+S TK QE A+KDI+ D+ Q  RMLR+LQGDV
Sbjct: 159 VRAKTKRLSGRPLNGTGKITAQILANLPYSLTKGQEQAVKDIIGDLKQPERMLRLLQGDV 218

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG     
Sbjct: 219 GAGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGREKGK 278

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R++ L+ +A G  HIIIGTHALFQD ++Y+ L+ VI+DEQHRFGV QRL+LT K TAP 
Sbjct: 279 ERQRILDELADGTIHIIIGTHALFQDKVEYHDLVFVIIDEQHRFGVHQRLQLTAKGTAPD 338

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+MTATPIPRTLVLT+ GD+D+SK+TEKPAGR+PI T I+P  R+ E+++R++  +SEG
Sbjct: 339 MLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPITTAIVPSERLSEIVDRMRKAISEG 398

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K YWICP +EE +     S  ERF S    F   + +IHGRM+  +K+  M +FK G  
Sbjct: 399 QKIYWICPLVEESEHVELTSAEERFQSFLPVFGDKLGLIHGRMTGQEKDDAMLAFKRGDT 458

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           +LLIATTVIEVG+DV DA++I+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  PL +
Sbjct: 459 RLLIATTVIEVGVDVPDATVIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKGPLGE 518

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEIARKD
Sbjct: 519 IAKARLQVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFKLASMEAHTDLLEIARKD 578

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A+ +L +D DL S RGQ++R+LLY++  +EA + +RAG
Sbjct: 579 ARLMLERDIDLQSERGQALRLLLYIFGRDEAIRLLRAG 616


>gi|49474349|ref|YP_032391.1| ATP-dependent DNA helicase recG [Bartonella quintana str. Toulouse]
 gi|49239853|emb|CAF26247.1| ATP-dependent DNA helicase recG [Bartonella quintana str. Toulouse]
          Length = 702

 Score =  635 bits (1638), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 328/702 (46%), Positives = 456/702 (64%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNAN-ETRFIDLLFYHPSSFIDRHYRP 59
           M P  + PLF  +    G   K    L+K++N   A  E   IDLL   P S IDR  +P
Sbjct: 1   MLPDLIRPLFTSVRALPGTSPKICALLAKVLNINPAQREPTVIDLLQLMPQSVIDRRMQP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E   VT+   + QH    +++ R PY++  +D TG+I L+FF+ +   LK    
Sbjct: 61  SIAFAQEGITVTLEIIVDQHHPPPIERNRLPYRVSAHDQTGKINLVFFHAQRPWLKKQLP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG+K+ V+GK+++   ++ M+HP +I  + Q    PLIE VY    GLS    ++ I  A
Sbjct: 121 EGKKVIVSGKVERFNGQLSMIHPDHIAPSEQSNQMPLIEPVYPSTAGLSAKTLRRTIQNA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L  +P+LPEWIE+ + ++++F S + A + IH P    D    S AR+RLAYDELLA Q+
Sbjct: 181 LEYIPLLPEWIEESVKKQQNFSSFSVALHRIHTPINPDDLSLKSAARKRLAYDELLACQL 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + K   G     +G   +K+L+ +PF  T  Q+ AI+DI  D++    MLR+L
Sbjct: 241 ALGLVRLKTKSLSGASRPPKGTYTKKLLKALPFQLTNGQKKAIQDIANDLASPEPMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVG+GKT+VAL+A A   E  GQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 301 QGDVGAGKTVVALMASAQIAENSGQSALMAPTEVLARQHFATIAPLAEKIGLQTVLLTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L+    GQA IIIGTHAL Q+++ Y  L L I+DEQHRFGV QRL LT K 
Sbjct: 361 EKGKLRANILKDTLSGQASIIIGTHALIQNNVAYKNLALTIIDEQHRFGVHQRLALTAKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P +L+MTATPIPRTLVLT+ GD+DIS+ITEKP GR+PI T I+P+ RI E++ER+ + 
Sbjct: 421 NKPDMLVMTATPIPRTLVLTAFGDMDISQITEKPTGRQPITTAILPLQRIHELLERIAIA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L +G+K YWICP +EE       S+  RF  L E F   + +IHG+MS  +KE+ M SFK
Sbjct: 481 LEKGEKLYWICPLVEESTTLELTSIENRFAILREQFGERVGVIHGKMSTDEKEAAMTSFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTVIEVG+D+ DASII+IE+AEHFGL+QLHQLRGRVGRGE+ SSCILLY  
Sbjct: 541 CGNICILVATTVIEVGVDIPDASIIVIEHAEHFGLSQLHQLRGRVGRGEKKSSCILLYKN 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL+K +  RL++++NTEDGF IAEED + R EGE+LG +QSGMP+F IA   +H  LL I
Sbjct: 601 PLTKTAAKRLNIIRNTEDGFKIAEEDWRLRGEGELLGTRQSGMPEFHIANLAVHSDLLSI 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR+DA+  L  D + +S RG+++R+LL L++ ++A + ++AG
Sbjct: 661 ARRDARLFLQHDANFSSKRGKALRLLLDLFRRDDAIRLLQAG 702


>gi|319405607|emb|CBI79230.1| ATP-dependent DNA helicase [Bartonella sp. AR 15-3]
          Length = 701

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 333/702 (47%), Positives = 453/702 (64%), Gaps = 3/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           M  S LNPLF P+ST  G+  +    L+K++N      E   IDLL   P S IDR  +P
Sbjct: 1   MHSSLLNPLFTPISTLPGINTRICSLLAKVLNINLTQREPTLIDLLRLMPHSVIDRRKQP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
            I+   E  IVT+   I QH       + PY+++ +D T  I L+FF+ +   L+    E
Sbjct: 61  GIAFAQEGSIVTLEVTIDQHKPPTNHNKSPYRVIGHDQTSTINLIFFHAQRSWLEKQLPE 120

Query: 120 GRKITVTGKIKKLKNRIIMVHP-HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           G+K+ ++GK+++ K ++ M+HP H +FH   D   P IE +Y    GLS    ++ + +A
Sbjct: 121 GKKVIISGKVERFKGQLSMIHPDHIVFHEQLD-QMPFIEPIYPSTAGLSTKTLRRAMQKA 179

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L  +P LPEWIE+ + ++ +F S   +   IH P    D    S AR+RLAYDE  A QI
Sbjct: 180 LEYIPSLPEWIEESIKKEHNFSSFPVSLRRIHAPINPDDLALESTARKRLAYDEFFANQI 239

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + K   G      G   +K+L  +PF  T  Q  +IKDI  D++    MLR+L
Sbjct: 240 ALGLVRLKTKLFSGTSRPPTGFYTKKLLEALPFQLTSGQIQSIKDIANDLASPTPMLRLL 299

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVG+GKT+VAL+A+A   E  GQ+ +M P  +LA+QH+  I    +   +   ++TG 
Sbjct: 300 QGDVGAGKTIVALMAIAQIAENSGQSALMVPTEVLARQHFATITPLAEKIGLQTVLLTGR 359

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L+ I  G+A IIIGTHAL Q+++ Y  L L I+DEQHRFGVQQRL LT+K 
Sbjct: 360 EKGKVRANILDTILSGEASIIIGTHALIQENVTYNNLALAIIDEQHRFGVQQRLTLTEKG 419

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P +L+MTATPIPRTLVLTS GD+D+S+IT+KP GR+PIKT  I   RI+E+IER+   
Sbjct: 420 NKPDILVMTATPIPRTLVLTSYGDMDVSQITDKPTGRQPIKTATISSERINELIERIATA 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L + +K YWICP +EE       S+  RF SL + F S + +IHG+MS  +KE+ M SFK
Sbjct: 480 LQKKEKIYWICPLVEESTNLELTSIESRFASLQKRFGSCVGMIHGKMSTDEKEAAMTSFK 539

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +L+ATTVIEVG+D+ DASII+IE+AEHFGLAQLHQLRGRVGRG++ SSCILLY  
Sbjct: 540 NANIYILVATTVIEVGVDIPDASIIVIEHAEHFGLAQLHQLRGRVGRGDKKSSCILLYKA 599

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL+K +  RL++++NTEDGF IAEEDL  R EGE+LG +QSGMP+F IA   +H  LL I
Sbjct: 600 PLTKAAEARLNIMRNTEDGFKIAEEDLLLRGEGELLGTRQSGMPEFYIANLAVHRELLFI 659

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A+K+A   L  DP+L+S +GQ+IR+LLYL+  ++A Q +RAG
Sbjct: 660 AKKNAHLFLQHDPNLSSEQGQAIRLLLYLFGRDDALQLLRAG 701


>gi|323136317|ref|ZP_08071399.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
 gi|322398391|gb|EFY00911.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
          Length = 700

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 311/701 (44%), Positives = 447/701 (63%), Gaps = 2/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLF  ++   GVG K +    +++    A E R +DLLF+ P++ +DR  RPK
Sbjct: 1   MRPDILAPLFGRVAALPGVGPKTAKLFDRLLARPGA-EARVVDLLFHLPTNVVDRSQRPK 59

Query: 61  ISEISEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+E   + +V I   + +H   Q +  R P+++L+ D TG+I L+FF    + ++     
Sbjct: 60  IAEAPMDTMVVIKATVVEHRRPQGRFARAPFRVLVEDETGDIELVFFLANPDWIERSLPI 119

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    ++G+I+    R  MVHP  +   +     P  EAVY L  GL      +   EA+
Sbjct: 120 GGTRWISGRIELYDGRRQMVHPDRVLDEAGLARLPPFEAVYGLTEGLQTRYVLRATEEAM 179

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +RLP LPEW E  +L     P+ AEA    H P          PAR+RLA DELLA Q+A
Sbjct: 180 TRLPALPEWQEPSVLAANKLPAFAEALRGAHRPESVSALSPQHPARQRLALDELLASQLA 239

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R + ++  G     +G+++Q I   +P+S T +Q+ A+ DI  D+    RMLR++Q
Sbjct: 240 LRLVRAKMRRLPGRENRGDGRLSQAIESALPYSLTGAQQRALADIRADLGSDRRMLRLVQ 299

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA +AMA+  E G Q+ +MAP  ILA+QHYE +    +   + V ++TG +
Sbjct: 300 GDVGSGKTIVAALAMASVAECGRQSALMAPTEILARQHYERLAPLLEPVGLRVALLTGRL 359

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             + R      I  G+  +++GTHAL Q  + ++ L L +VDEQHRFGVQQRL L  K  
Sbjct: 360 KASERAALHAAIGAGEIDVVVGTHALVQTDLAFHDLGLAVVDEQHRFGVQQRLALGSKGE 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  VL+MTATPIPRTL LT+ GD+D S + EKP GR PI T  +P +RI EV+  L+  L
Sbjct: 420 AVDVLVMTATPIPRTLALTAFGDMDSSALDEKPPGRTPISTRALPASRIGEVVAGLQRAL 479

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           ++G +AYW+CP +EE ++ +  +  ER   L  +F  ++ ++HGRM   +K++VM++F+ 
Sbjct: 480 AQGARAYWVCPLVEENEDLDLAAAEERAADLRRYFGDAVGLLHGRMKGPEKDAVMEAFQR 539

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTVIEVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG   SSC+LLY  P
Sbjct: 540 GDARLLVATTVIEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGTGESSCLLLYKGP 599

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+ +  RL++++ TEDGF IAEEDL+ R EGEILG +Q+GMP F +A    H  LL IA
Sbjct: 600 LSETAKARLTIIRQTEDGFRIAEEDLRLRGEGEILGTRQAGMPGFRLADLTAHARLLAIA 659

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R DA+ IL +DP+L+S RG+++R+LLYL++ +EA + +RAG
Sbjct: 660 RDDAELILRRDPELSSERGKALRVLLYLFERDEAIRLLRAG 700


>gi|307942226|ref|ZP_07657577.1| ATP-dependent DNA helicase RecG [Roseibium sp. TrichSKD4]
 gi|307774512|gb|EFO33722.1| ATP-dependent DNA helicase RecG [Roseibium sp. TrichSKD4]
          Length = 700

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 317/700 (45%), Positives = 460/700 (65%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L+PLFAP+S+  G+G K +  L+  +      E    DLLF+ P S IDR ++P 
Sbjct: 1   MRPPVLDPLFAPVSSLPGIGPKIAKLLTGFLTQNPDREATVADLLFHLPHSVIDRRHKPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+      IVT+   I +H +     + PYKI   D TG+IT +FF+ + + L+ +F  G
Sbjct: 61  IAYSENGDIVTLDVMIDRHQAPPRGSKAPYKITAFDDTGQITFVFFHPRRDWLEKMFPAG 120

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            +  V+GK++   ++  MVHP Y+    +  + P +E VY L  GL+    +K +  A+ 
Sbjct: 121 ERRIVSGKVEWFNSQPQMVHPDYVVSPEEADSLPTLEPVYPLTAGLASKTLQKGLGAAID 180

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           R+P LPEW++    ++  + S +EA   +H P + +D +  SP  +RLAYDELLA Q+AL
Sbjct: 181 RIPHLPEWLDAAHQRRNHWQSFSEALVQVHKPDERQDLDPESPCVQRLAYDELLASQLAL 240

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R Q ++  GI     G + ++++  +PF  T SQ+++I +I  D+++  RMLR+LQG
Sbjct: 241 ALVRAQMRQLGGIARATTGTLQKEVIAALPFELTASQQTSISEINDDLAKPVRMLRLLQG 300

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL A+A  +E G Q  +MAP  ILA+QHY  +    +   I + ++TG   
Sbjct: 301 DVGSGKTVVALSALAQVIETGAQGALMAPTEILARQHYASMLTLCEKAGIRLALLTGKDS 360

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR   E++  G+  + +GTHALFQ S+ +  L LV+VDEQHRFGV QRL L+ K   
Sbjct: 361 AKTRRDVQEKLLSGEIDLAVGTHALFQGSVAFRDLGLVVVDEQHRFGVHQRLALSAKGRG 420

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+MTATPIPRTLVLTS GD+D+S++T+KPAGRKPI TV   ++R++E+I R+   + 
Sbjct: 421 VDVLVMTATPIPRTLVLTSFGDMDVSRLTDKPAGRKPITTVSASLDRLEEIISRVGNAIQ 480

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G+K YWICP +EE ++ +  +V +R   L +     ++++HGRM+  +KE+ M +FK G
Sbjct: 481 SGQKVYWICPLVEESEKIDLAAVGDRHRVLEQALGQPVSLVHGRMTADEKEAGMQAFKGG 540

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+DV DA+II+IE+AE FGLAQLHQLRGRVGRG++ S+C+LL+  PL
Sbjct: 541 DTRVLVATTVIEVGVDVPDATIIVIEHAERFGLAQLHQLRGRVGRGDKPSTCVLLFKGPL 600

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + + +RL++++ T DGFLIAEEDLK R  GEILG +QSGMP F IA  E H  L+E AR
Sbjct: 601 GETASSRLNIMRQTNDGFLIAEEDLKLRGGGEILGTRQSGMPGFRIADAESHADLMETAR 660

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ IL +DP L S RG+++R LLYL+  +EA   +RAG
Sbjct: 661 DDARLILDKDPQLKSERGEALRALLYLFGRDEAIALLRAG 700


>gi|304391608|ref|ZP_07373550.1| ATP-dependent DNA helicase RecG [Ahrensia sp. R2A130]
 gi|303295837|gb|EFL90195.1| ATP-dependent DNA helicase RecG [Ahrensia sp. R2A130]
          Length = 702

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 326/706 (46%), Positives = 461/706 (65%), Gaps = 10/706 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRP 59
           MRP  LNPLF+PL +  G+G K ++ LSK++  G+      + DLLF+ PS  IDR  RP
Sbjct: 1   MRPDILNPLFSPLQSLPGIGPKLAVALSKLLKGGDGKLPAHVSDLLFHLPSGLIDRRNRP 60

Query: 60  KISEISEERIVTITGYISQH-----SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLK 114
            I +  +  + T+   + +H      +F++    PYK+  +D +GEI L++F  +   L+
Sbjct: 61  LIMDAPDGSLATLELRVDRHEEPPRGNFKV----PYKVFGHDESGEIGLVWFRGQARWLR 116

Query: 115 NVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKI 174
           +   EG    V+G+++    R  MVHP ++         PL+E VY L  G+S+ +  K 
Sbjct: 117 DKLPEGETRIVSGRVEWFNGRPNMVHPDHVVSPENIDELPLVEPVYPLTAGVSLKVMGKA 176

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           +   LS+LP LPEW E  +L K  +P++AEA + IH+P+   D      A  RLAYDELL
Sbjct: 177 VDATLSKLPDLPEWAEPSVLAKHEWPAMAEALDRIHHPQDELDLSVHGKAWHRLAYDELL 236

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           AGQ+AL L+R + K+  GI    +G++ + + +  P+  T +QE ++ +IL DM+Q  RM
Sbjct: 237 AGQLALALVRSRMKRSAGIAWVGDGRLQKVVRKTFPYPLTGAQERSVGEILADMAQPERM 296

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           LR+LQGDVGSGKT+VAL+A  AA+EAGGQA IMAP  ILA+QH   I    +   I + I
Sbjct: 297 LRMLQGDVGSGKTIVALLACCAAIEAGGQAAIMAPTEILARQHLATITPLAEAAGIRIAI 356

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG      R   LER+A G   +++GTHALFQ  +++  L L IVDEQHRFGV QRL L
Sbjct: 357 LTGREKGKTREAILERLADGSIDLLVGTHALFQGPVEFKNLALGIVDEQHRFGVHQRLAL 416

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K     +L+MTATPIPRTLVLT  GD+D+SK+ EKPA R PI+T  +P+ R+D++I+R
Sbjct: 417 AAKGAGADILVMTATPIPRTLVLTFFGDMDVSKLDEKPAHRLPIQTNALPMERLDQLIQR 476

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
               +++G K YW+CP +E+  E    S   R++SL      ++ ++HGRM   +K++ M
Sbjct: 477 TVDAVAKGDKIYWLCPLVEDNDELPVTSAQARYDSLRALMGDNVGLVHGRMKPTEKDAAM 536

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK G  ++L+ATTVIEVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG++ SSC+L
Sbjct: 537 ADFKEGRTRVLVATTVIEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDKSSSCLL 596

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL + S  RL +++ +EDGF IAEEDLK R EGEILG +QSG P F IAQ E H  
Sbjct: 597 LYKAPLGEVSTARLKIMRESEDGFRIAEEDLKLRGEGEILGTRQSGTPGFQIAQMEHHGD 656

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +LE+AR DA+ ++  DP+L S RG+++R+LLYL+  +EA + +RAG
Sbjct: 657 ILELARDDARLVIATDPELESERGKALRVLLYLFSKDEAVRLLRAG 702


>gi|288958503|ref|YP_003448844.1| ATP-dependent DNA helicase [Azospirillum sp. B510]
 gi|288910811|dbj|BAI72300.1| ATP-dependent DNA helicase [Azospirillum sp. B510]
          Length = 693

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 299/700 (42%), Positives = 450/700 (64%), Gaps = 7/700 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L PLF P++   G+G +    + K+           +DLL++ P   +DR + PK
Sbjct: 1   MRPAILFPLFKPVTALPGLGPRLGKLVEKLAG------PHVVDLLWHLPCGVVDRRFSPK 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I++    RI T+T  I  H+   L  R PYKI   D TG + L++F+ + + L      G
Sbjct: 55  IADAPHGRIATLTVRIDSHAP-PLNPRHPYKIRCTDETGVLELVYFHVRGDWLSKQIPAG 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
             + V+GK++   +   + HP  +       +  L+E VY +  GL     +K +  AL+
Sbjct: 114 TTMVVSGKVEWFNDTAQITHPDAVVAVDAKEDLELVEPVYPMTAGLPAKTLRKAVRAALA 173

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            +P L EW +   L ++ +P  A+A    H P    D   T+P R RLAYDELLA Q+AL
Sbjct: 174 DVPALAEWQDPAWLARRQWPGWADALKRAHAPEDEGDLAATAPIRCRLAYDELLANQLAL 233

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           +L+R   ++  G     +G + +  L  +PFS T SQ +A++DI  DM+ + RMLR+LQG
Sbjct: 234 MLVRASQRRLAGRVTQGDGTLRRAALAALPFSLTGSQAAALEDIYVDMAAERRMLRLLQG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+AM  AVEAG QA +MAP  ILA+QH E +    +   + + ++TG   
Sbjct: 294 DVGSGKTVVALMAMLNAVEAGAQAALMAPTEILARQHAESLAPLCRAAGVEIGLLTGRDK 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R+  L+R+A G   +++GTHALFQ+ + +  L L ++DEQHRFGV QRL+L+ K  A
Sbjct: 354 GKARQAVLDRLASGDLPLLVGTHALFQEDVAFKDLALAVIDEQHRFGVHQRLQLSAKGRA 413

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+MTATPIPRTL LT+ GD+D+S++TEKPAGRKP++TV I ++R++EV+  ++  ++
Sbjct: 414 VDVLVMTATPIPRTLTLTAYGDMDVSRLTEKPAGRKPVQTVTIALDRLEEVVNGIQRKVA 473

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           EG + YW+CP ++E ++S+  +  ER   L   F   + ++HG+M   DK++VM +F  G
Sbjct: 474 EGARVYWVCPLVDESEQSDLAAATERHAFLRATFGDRVGLVHGKMRGSDKDAVMAAFAEG 533

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG++V +A++++IE+AE FGLAQLHQLRGRVGRGE+ SSC+L++   L
Sbjct: 534 GLDVLVATTVIEVGVNVPEATVMVIEHAERFGLAQLHQLRGRVGRGEKPSSCLLMFDANL 593

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++ +  RL  L++TEDGF+IAEEDL+ R  GE+LG +QSG+P F +A   +H  LL +AR
Sbjct: 594 TETARARLKTLRDTEDGFIIAEEDLRLRGAGEVLGTRQSGLPGFRMADLAVHGDLLAVAR 653

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ ++ +DPDL S RGQ++R LLYL++ + A + +R+G
Sbjct: 654 DDARLVVERDPDLASPRGQALRTLLYLFERDAAAKTLRSG 693


>gi|296445812|ref|ZP_06887764.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
 gi|296256640|gb|EFH03715.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
          Length = 700

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 307/701 (43%), Positives = 442/701 (63%), Gaps = 2/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPS L+PLF   +   G+G K +    +++      ETR +D+LF+ P + +DR  RP 
Sbjct: 1   MRPSILDPLFGRAAALPGIGPKTAKLFDRLL-AAPGKETRLVDILFHLPINLLDRSLRPT 59

Query: 61  ISEISEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+E   ++IV +   +++H   Q +  + PYKIL+ D TG+  L+FF    + ++     
Sbjct: 60  IAEAPFDQIVVLKVRVAEHRKPQGRYAKAPYKILVEDDTGDCELVFFLANADWIERSLPL 119

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V+GK++    R  +VHP  +   +     P  EAV+ L  GL     ++ +  AL
Sbjct: 120 GATRWVSGKLELYDGRRQIVHPDRVLDEAGIAKLPPAEAVHGLTEGLQERFVQRAVEGAL 179

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            RLP LPEW +  +L     P  A A    H+P    D E    AR+RLA DELL+ Q+A
Sbjct: 180 ERLPSLPEWQDPSVLAANKLPDFATALREAHHPTSRADVEPMGKARQRLALDELLSQQLA 239

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R + K+  G     +G+I Q +   +PF+ T +Q  A+ +I  D+S   RMLR+LQ
Sbjct: 240 LRLLRAKMKRLPGRENAGDGRITQALEAALPFALTGAQTRALAEIRADLSSSRRMLRLLQ 299

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+AMA+ VE G QA +MAP  ILA+QHYE +    +   + + ++TG  
Sbjct: 300 GDVGSGKTIVALLAMASVVECGRQAALMAPTEILARQHYEKLLPLAEGVGLRLALLTGRA 359

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             + R +  E IA G+A I+IGTH+L Q  + +  L L ++DEQHRFGVQQRL L  K  
Sbjct: 360 KASERARLHETIAKGEADIVIGTHSLVQSDLAFADLGLAVIDEQHRFGVQQRLALGAKGE 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  VL+MTATPIPR+L LT  GD+D S + EKP GR PI T  +P++RI +V+E ++  L
Sbjct: 420 AADVLVMTATPIPRSLALTYFGDMDSSVLDEKPPGRTPIDTRALPVSRIGDVVEGVRRAL 479

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G + YW+CP +EE +E +  +  +R + L   F   + ++HGRM   ++++ M++FK 
Sbjct: 480 GSGARVYWVCPLVEENEELDLAAAQDRHDDLTRIFGEIVGLVHGRMKGAERDAAMEAFKA 539

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GT ++L+ATTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG   SSC+LLY  P
Sbjct: 540 GTTRILVATTVIEVGVDVPEATVMVIEHAERFGLAQLHQLRGRVGRGSGKSSCLLLYKGP 599

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + +  RL  L+ TEDGF IAEEDL+ R EGE+LG +QSG+P F +A    H  LL  A
Sbjct: 600 LGETAKARLVTLRQTEDGFRIAEEDLRLRGEGEVLGSRQSGLPGFRLADIAAHARLLATA 659

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R DA+ IL +DP+L S RG+++R+LLYL++ +EA + +RAG
Sbjct: 660 RDDAELILRRDPELASPRGEALRVLLYLFERDEAVRLLRAG 700


>gi|300023169|ref|YP_003755780.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524990|gb|ADJ23459.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 704

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 315/703 (44%), Positives = 448/703 (63%), Gaps = 4/703 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPSFLNPLFA   T  G+G ++ L L K +       E R IDLL++ P+  IDR   P
Sbjct: 1   MRPSFLNPLFASAQTISGIGPRFILLLKKCLALPPGVAEPRVIDLLWHMPTGIIDRRAEP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
           +++      IVT+   + +H       R+ P+K+   D TG I L+FF+ + + ++    
Sbjct: 61  QLASAVPGSIVTLQLRVLKHKPAPRGNRKAPHKVTCEDDTGRIDLVFFHAERKFIEKQLP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG    V+G+I++    + M HP YI       + P++E VY L  GLS  +  K   +A
Sbjct: 121 EGEIRFVSGRIERYGEALQMAHPDYIVAPEARDDLPMLEPVYPLTAGLSGKIMVKAARQA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           + R+P LPEW E   L+ + +P+   A N IH P  A D    +   +RLAYDELLAGQ+
Sbjct: 181 VDRVPELPEWQESRWLEARGWPAFKTAINRIHRPLDAPDVSNGAGPWQRLAYDELLAGQL 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           A  L+R+  K E G  +  +G I QKI   +PF  T SQ++A+ +I  D++  +RMLR+L
Sbjct: 241 AFALVRQNMKAERGRRLAGKGDIRQKIADALPFKLTGSQQTALAEISDDLAASHRMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL+ MA A+EAG QA +MAP  +LA+QH E I    +   + + ++TG 
Sbjct: 301 QGDVGSGKTVVALMTMAVAIEAGAQAALMAPTEVLARQHQETIAPLAEAAGLRIALLTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LER+A G+  I+IGTHALFQ  + +  L L ++DEQHRFGV QRL L  K 
Sbjct: 361 EKGKVRDAILERLASGETDILIGTHALFQSDVVFKDLALAVIDEQHRFGVHQRLALQAKG 420

Query: 419 TA--PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                +VL+MTATPIPRTL++T  GD+D+SK+TEKPAGRKPI T  +P+  ++ ++ER++
Sbjct: 421 ANNDTNVLVMTATPIPRTLLMTHYGDLDVSKLTEKPAGRKPITTKALPLESLERLVERIR 480

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             L+EG + YW+CP IE  + ++  +  ERF  L + F   + ++HG +S  +K+  M +
Sbjct: 481 AQLAEGAQVYWVCPLIESSELTDLAAAEERFAHLRQIFGEGVGLLHGALSAKEKDETMAA 540

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  GT K+L+ATTVIEVG++V +A+I++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y
Sbjct: 541 FAEGTIKILVATTVIEVGVNVPNANIMVIEHAERFGLAQLHQLRGRVGRGSRESFCMLVY 600

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PL + +  RL +++ TEDGF IAE+DL+ R  GEILG +QSG P F +A+   +D+LL
Sbjct: 601 KAPLGETAGQRLKMMEETEDGFKIAEKDLELRGGGEILGARQSGAPGFRVAEVPGYDTLL 660

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
             A  DA  IL  DP+LTS RGQ++R LLY+++ +EA +  RA
Sbjct: 661 AAASDDAALILGSDPNLTSPRGQALRTLLYVFECDEAVRLFRA 703


>gi|209964571|ref|YP_002297486.1| ATP-dependent DNA helicase RecG [Rhodospirillum centenum SW]
 gi|209958037|gb|ACI98673.1| ATP-dependent DNA helicase RecG [Rhodospirillum centenum SW]
          Length = 693

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 303/701 (43%), Positives = 452/701 (64%), Gaps = 9/701 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L PLFAP+++  G+G +      ++           +DLL++ P+  +DR     
Sbjct: 1   MRPAVLYPLFAPITSLPGLGPRLGKLAERLAG------PHVVDLLWHKPAGILDRMAVES 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I    E R VT+T  +  H+   L   RPY++   D TG + L+FF+ K + L      G
Sbjct: 55  IEAAPEGRHVTLTVRVDGHAP-PLAANRPYRVRCTDHTGLMDLVFFHIKGDWLTKRLPVG 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEAL 179
           +K+ V+GK ++   ++ +VHP Y F  ++D   P  +E VY L  GL+    +  I  AL
Sbjct: 114 QKVVVSGKAERFNGQLQIVHPDY-FGPAEDAPPPTAVEPVYPLTGGLNPKPLRTAIQAAL 172

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            R P LPEW +   L+++ +P    A   +H+P    D     PAR RLAYDELLA Q+A
Sbjct: 173 QRAPALPEWQDPAWLKRQGWPDWLTALRTLHHPEGEHDIAPDGPARARLAYDELLANQLA 232

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R   ++  G P+  +G +  K+L  +P++ T +Q  A+++I  DM+  +RMLR+LQ
Sbjct: 233 LALVRWHQRRLAGRPVAGDGHLRDKVLATLPYALTGAQRLALEEIQADMAADSRMLRLLQ 292

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+AM  AVEAG QA +MAP  ILA+QH E +        + + ++TG  
Sbjct: 293 GDVGSGKTIVALLAMLNAVEAGCQAALMAPTEILARQHAESLAPLCATAGVELAVLTGRD 352

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R+  L+R+A G+ HI++GTHA+FQ+ + ++ L L ++DEQH+FGV QRL+L  K  
Sbjct: 353 KGKARQAVLDRLADGRIHILVGTHAVFQEDVAFHDLALAVIDEQHKFGVHQRLQLAAKGR 412

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L+MTATPIPRTL LT+ GD+++S++TEKP GR+P+KTV++P  R++EVI  L   +
Sbjct: 413 GVDTLVMTATPIPRTLTLTAYGDMEVSRLTEKPPGRRPVKTVVLPAERLEEVIASLPRAI 472

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + G++ YW+CP +EE ++ +  +   R   L E F   + ++HGRM   +K++ M +F  
Sbjct: 473 AGGQRIYWVCPLVEESEQVDVAAATLRHADLRERFGERVGLVHGRMKGAEKDAAMAAFAE 532

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+ATTVIEVG++V +A+I++IE+AE FGLAQLHQLRGRVGRG   SSC+LLY+PP
Sbjct: 533 GRLDVLVATTVIEVGVNVPEATIMVIEHAERFGLAQLHQLRGRVGRGAAASSCLLLYYPP 592

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + +  RLSV+K +EDGFLIAE+DL+ R  GE+LG +QSG+P+F +A    H  LL  A
Sbjct: 593 LGETARERLSVMKESEDGFLIAEKDLQLRGAGEVLGTRQSGLPEFRLADLAAHGDLLTAA 652

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R DA+ IL +DP+L S RG+++R LLYL++ + A +++R+G
Sbjct: 653 RDDARLILERDPELQSPRGEALRTLLYLFERDAAVKYLRSG 693


>gi|154253519|ref|YP_001414343.1| ATP-dependent DNA helicase RecG [Parvibaculum lavamentivorans DS-1]
 gi|154157469|gb|ABS64686.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 694

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 301/701 (42%), Positives = 447/701 (63%), Gaps = 8/701 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFAP  +  G+G +    + K+         + ID+L++ PS  IDR +RP 
Sbjct: 1   MRPEILFPLFAPARSLPGIGPRLEALVEKLAG------PKVIDILWHLPSGLIDRRHRPS 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++ +  I T+   +  H   +  KR PY++ + D TGE+ ++FF  + E L  +  EG
Sbjct: 55  IADVRDGEIATMEVTVGLHIPPR-TKRLPYRVHVFDDTGEMQIVFFNARAEHLAKILPEG 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           ++  ++G+++  +    M HP ++    +  + PL+E +Y L  GL +   +K +  AL 
Sbjct: 114 QRRIISGRVEFYQGTPQMTHPDHMIGLDELADLPLMEPIYPLTAGLPLKSIQKAVRGALP 173

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           RLP LPEW +   L+ + + +  ++    H  + A D    +PAR RLAYDELLA Q+AL
Sbjct: 174 RLPELPEWQDGPWLKARGWTNWRQSLIAAHELQSAADLGADAPARARLAYDELLANQLAL 233

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R + ++  G  I+  G++ +K+   +PF+ T +Q  A+ +I  DM   +RMLR+LQG
Sbjct: 234 GLVRLRMRRLPGRSISAPGQLRKKVEAALPFALTNAQIRALSEISADMKSNHRMLRLLQG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+AM  AVEAG QA +MAP  ILA+QHY  +        + +E++TG   
Sbjct: 294 DVGSGKTVVALLAMLDAVEAGFQAAMMAPTEILARQHYATLAPLCDAAGVRLELLTGREK 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-T 419
              R + L R A G+  I++GTHALFQ+ + +  L   +VDEQHRFGV QRL LT K  T
Sbjct: 354 GKRREEILARAAAGEIDILVGTHALFQEDVAFRALAFAVVDEQHRFGVHQRLMLTSKGGT 413

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL+MTATPIPRTL LT+ GD+D+SK+ EKP GRKP+ T  +P++R+ EV   L   L
Sbjct: 414 GTDVLVMTATPIPRTLTLTAYGDMDVSKLDEKPPGRKPVDTRALPLDRLGEVAAGLDRAL 473

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + G + YW+CP +EE  E +  +  ER   L   +   + ++HGRM   DK++VM  F+ 
Sbjct: 474 ARGDQIYWVCPLVEESDEVDAAAAEERHRHLQSIYGEKVGLVHGRMKAADKDAVMARFQA 533

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L+ATTVIEVG++V  A++++IE+AE FGLAQLHQLRGRVGRG + SSC+LLY  P
Sbjct: 534 GDIRILVATTVIEVGVNVPTATVMVIEHAERFGLAQLHQLRGRVGRGGDKSSCLLLYQAP 593

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + +  R+ +++ TEDGF IAEEDL+ R  GE+LG +QSG+P+F +A  E    LL +A
Sbjct: 594 LGETAAARIKIMRETEDGFRIAEEDLRLRGAGELLGTRQSGLPEFRLANIETQQELLAVA 653

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             DA+ IL +DP+L S RG+++R LLYL++ +EA +++R+G
Sbjct: 654 YDDARLILDRDPELESPRGEALRTLLYLFERDEAIRYLRSG 694


>gi|144898256|emb|CAM75120.1| ATP-dependent DNA helicase recG [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 693

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 305/700 (43%), Positives = 449/700 (64%), Gaps = 7/700 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPS LNPLFAP++T  G+G K + F  ++         R +DLL++ PS  IDR + PK
Sbjct: 1   MRPSLLNPLFAPITTLAGIGPKLAPFYERLAGG------RVVDLLWHLPSGVIDRRFAPK 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           ++E    ++ TIT  +  H      KR PY++  +D TG   L+FF+ + + L+    +G
Sbjct: 55  LAEAPAGKVATITVQVEAHFPSSSPKR-PYRVRCSDETGFAHLVFFHGREDWLRRQLPDG 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               ++G ++   + I + HP +I   ++      IE VY L  GL+  +  K I  A+ 
Sbjct: 114 EWRVISGVVEHFNDGIQITHPDHIVPLAEREQVMNIEPVYPLTGGLTARMVAKTIRTAVD 173

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           + P +PEW +     + ++PS  +A + +H P+  +     +PAR RLA+DELLA Q+AL
Sbjct: 174 QAPQMPEWQDAAWFARNAWPSWRQALDSLHRPQSEQAVIEDNPARRRLAFDELLANQLAL 233

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           +++R   +K  G PI V   +  ++L  +PF+ T +Q  ++ +I  DM++  RMLR+LQG
Sbjct: 234 MMVRAHMRKLKGRPIPVSTHLRPQVLAALPFTLTAAQTRSLAEIDADMAEPLRMLRLLQG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+AM  AVE+G QA +MAP  ILA+QH + I    +   + V ++TG   
Sbjct: 294 DVGSGKTVVALLAMLNAVESGAQAALMAPTEILARQHMDTIAPLVEGAGLRVALLTGRDK 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R   L  +A G+  IIIGTHALFQ+ + Y  L   ++DEQHRFGV QRL+L  K  A
Sbjct: 354 GKARDAILADLAAGRVQIIIGTHALFQEDVAYADLAFAVIDEQHRFGVHQRLELASKGQA 413

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L+MTATPIPRTL+LTS GD+D S++ EKP GR+P+ T  +P++R+DEV++ +   + 
Sbjct: 414 VDMLVMTATPIPRTLLLTSYGDMDASRLDEKPPGRQPVSTRALPLSRMDEVVDGIGRAVK 473

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + YW+CP +E+ + S+  +  ER   L + F   + ++HG+M  + K+ VM  F  G
Sbjct: 474 AGARVYWVCPLVEDSETSDLAAAEERHRHLSQVFGDGVGLVHGKMKGLAKDKVMADFAAG 533

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG++V +A+I++IE+AE FGLAQLHQLRGRVGRG   SSC+LLY  PL
Sbjct: 534 QLSVLVATTVIEVGVNVPEATIMVIEHAERFGLAQLHQLRGRVGRGSGASSCLLLYGAPL 593

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N+  RL +++ TEDGF+IAEEDL+ R  GEILG +QSG+P+F +A   LH  LL  AR
Sbjct: 594 SENAKARLEIMRATEDGFVIAEEDLRLRGGGEILGTRQSGLPEFKLADLALHGDLLAAAR 653

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA  IL +DP+LTS RGQ++R+LLYL++ + A   +R+G
Sbjct: 654 DDAALILARDPELTSERGQALRVLLYLFERDAAVHTLRSG 693


>gi|83311566|ref|YP_421830.1| ATP-dependent DNA helicase RecG [Magnetospirillum magneticum AMB-1]
 gi|82946407|dbj|BAE51271.1| RecG-like helicase [Magnetospirillum magneticum AMB-1]
          Length = 693

 Score =  605 bits (1560), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 298/700 (42%), Positives = 447/700 (63%), Gaps = 7/700 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFAP++T  G+G + +    +++        + +DLL++ P+  +DR + PK
Sbjct: 1   MRPQVLFPLFAPVTTLPGIGPRLAPLYQRLVG------DKVLDLLWHLPTGVVDRRFAPK 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           ++E    ++ T+T  +  H      KR PY++ ++D TG + L+FF+ + + L+    EG
Sbjct: 55  VAEAPHGKVATLTLRVDAHFPSSSPKR-PYRVRMSDETGFLHLVFFHGREDWLRKQLPEG 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+G+++   N I + HP +I    Q      +E VY L  GL+     K +  A++
Sbjct: 114 EIRVVSGQVEHFNNEIQISHPDHIVPLDQIAQVMAVEPVYGLTAGLTGRAVAKTVAAAVA 173

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           + P LPEW +   L ++++P+   A   +H+P         +PAR RLA+DELLA Q+AL
Sbjct: 174 KAPELPEWQDVHWLDRQNWPTWHAALTALHHPADEHGAIGDTPARRRLAFDELLANQLAL 233

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++R Q +K  G P+  +G +  K++  +P++ T +Q  ++ +I  DM+Q  RMLR+LQG
Sbjct: 234 AMVRAQMRKLKGRPLVGDGSLRSKVMAALPYTLTGAQSRSLAEIDADMAQPLRMLRLLQG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+AM  AVEAG QA +MAP  ILA+QHY  I    +   + V ++TG   
Sbjct: 294 DVGSGKTVVALLAMLTAVEAGCQAAMMAPTEILARQHYAGIAPLAEAAGLKVALLTGRDK 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R   L  +A G+ HI++GTHALFQ+ + +  L L ++DEQHRFGV QRL+L  K  A
Sbjct: 354 GKARDAVLAGLASGETHIMLGTHALFQEDVAFKDLALAVIDEQHRFGVHQRLELAAKGLA 413

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L+MTATPIPRTL+LT+ GD+D S++ EKP GRKPI T ++P+ R+DE++  +   +S
Sbjct: 414 VDMLVMTATPIPRTLLLTAYGDMDASRLDEKPPGRKPIDTRVVPLARLDEMVAGVGRAIS 473

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G +AYW+CP +EE + S+  +  ER   L + F   + ++HGRM    K+ VM  F  G
Sbjct: 474 GGARAYWVCPLVEESETSDLAAAEERHRHLSQVFGDRVGLVHGRMKGAAKDKVMAEFAAG 533

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG+DV  A+I++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PL
Sbjct: 534 ELDILVATTVIEVGVDVPAANIMVIEHAERFGLAQLHQLRGRVGRGTRESRCLLLYGHPL 593

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + +  RL +++ TEDGF IAEEDL+ R  GE+LG +QSG+P+F +A   +H  LL  AR
Sbjct: 594 GEIAKARLEIMRATEDGFRIAEEDLRLRGGGEMLGTRQSGLPEFRLADLAIHGELLAAAR 653

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ IL +DP+L+  RG+++R+LLYL++ + A + +R+G
Sbjct: 654 DDARLILDRDPELSGPRGEALRVLLYLFERDAAVRTLRSG 693


>gi|217978366|ref|YP_002362513.1| ATP-dependent DNA helicase RecG [Methylocella silvestris BL2]
 gi|217503742|gb|ACK51151.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
          Length = 690

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 315/703 (44%), Positives = 444/703 (63%), Gaps = 16/703 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPS LNPLFA  ++  GVG K    L ++   G   E R +DLLF+ P+  +DR  R K
Sbjct: 1   MRPSILNPLFASAASLPGVGPKTGKLLDRLFGVG---EARVLDLLFHLPAGVVDRRTRAK 57

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+E   + IV I   + +H   +   + P ++L+ D TG+I L+FF      ++     G
Sbjct: 58  IAEAPLDAIVVIEVMVVEHRPAR--GKGPTRVLVEDETGDILLVFFLTNHNWIERSLPVG 115

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            K  V+GK++       MVHP  +           +E VY L  GLS  L  K +  AL+
Sbjct: 116 AKRWVSGKLEIWDGHRQMVHPDRVLDAEGLAKMAPVEPVYPLTDGLSQRLLAKAVDGALA 175

Query: 181 RLPVLPEWIEKDLLQKKSFPS---IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           RLP LP+W           P+     +A    H P+  +D    + AR++LA DE+LAGQ
Sbjct: 176 RLPALPDW--------GGMPAQLNFVQALAAAHRPQTPEDILPEAAARKKLASDEMLAGQ 227

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL LMR + ++  G     +G+IAQKI   +PFS T+ QE A+ +I  D+S ++RMLR+
Sbjct: 228 LALGLMRARERRMPGRASAGDGRIAQKIRAALPFSLTRGQEQALAEIRADLSSESRMLRL 287

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL+AMA+ VEAG QA +MAP  ILA+QH+  ++++ +   + + ++TG
Sbjct: 288 LQGDVGSGKTLVALLAMASCVEAGRQAALMAPTEILARQHFASLQRFAEPGGLRLALLTG 347

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 R K L  +A G+  I+IGTHALFQ  + +  L L +VDEQHRFGV+QRL L  K
Sbjct: 348 RDKGVSRDKTLRALASGEIDILIGTHALFQQGVDFRDLALAVVDEQHRFGVRQRLALGDK 407

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                +L MTATPIPR+LVLT  GD++IS I EKP GR+PI+T  +P  R+ E+IERL  
Sbjct: 408 GERTDILAMTATPIPRSLVLTYFGDMEISTIREKPVGRQPIETRALPTERLGELIERLSA 467

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            L+ G +AYW+CP +EE +  +  +  ERF  L + F  ++ +IHG+M   DK++ M++F
Sbjct: 468 ALAAGAQAYWVCPLVEESEALDVAAAQERFEDLQKFFGPAVGLIHGKMKGKDKDAAMEAF 527

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             GT K+L+ATTVIEVG+D   ASII+IE+AE FGLAQLHQLRGRVGRG   S+CILLY 
Sbjct: 528 LAGTTKILVATTVIEVGVDAPQASIIVIEHAERFGLAQLHQLRGRVGRGSAKSACILLYK 587

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PL + +  R+ +L+ +EDGF IAEEDL+ R EGE+LG KQSG+P F +A P  H  LL 
Sbjct: 588 GPLGETAKARIEILRESEDGFRIAEEDLRLRGEGEVLGQKQSGLPGFRLADPAAHADLLV 647

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            AR++A+ I+ ++P L   +G+++R+LL +++  EA + + AG
Sbjct: 648 EARREAQRIVAENPKLEGEKGEALRLLLNIFERAEAIRLLGAG 690


>gi|163747148|ref|ZP_02154504.1| ATP-dependent DNA helicase RecG [Oceanibulbus indolifex HEL-45]
 gi|161379709|gb|EDQ04122.1| ATP-dependent DNA helicase RecG [Oceanibulbus indolifex HEL-45]
          Length = 696

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 299/701 (42%), Positives = 442/701 (63%), Gaps = 10/701 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           RP  L PLFA L T  GVG K +  L+++ I           DL+F  P S IDR  R  
Sbjct: 4   RPEQLFPLFAGLETLEGVGPKTAQLLNQLAIQAPR-------DLIFTLPHSGIDRRLRDS 56

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           + +      +T+   I  H   +  K   Y+I + D      L++F+ + +  +    EG
Sbjct: 57  VQDAHLPATITVAVTIGAHRPART-KGGAYRITVEDAQTSFQLVYFHARGDYWQRQLPEG 115

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            +  V+G+++       MVHP +     Q  + P  E VY L  GL+  +  K    AL+
Sbjct: 116 SRRIVSGRVEFFDGIAQMVHPDFAVPEEQAGDIPDFEPVYPLTAGLTQKVMYKATRGALA 175

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           RLPV+ EW +   + + ++P  A A    H+P+ A+D   T+PARERLAYDELLA Q+ L
Sbjct: 176 RLPVVAEWADPGQVAQANWPDFAAAAEAAHDPQTAQDLTATAPARERLAYDELLAHQVTL 235

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L R+  +++ G   + +G++ Q++L+++P+SPT +Q  AI +I  DM Q+ RM R+LQG
Sbjct: 236 ALARQSERRKKGRASHGDGRLEQRVLKSLPYSPTGAQRRAIDEITADMGQETRMNRLLQG 295

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG+GKTLVA +A+  AVEAGGQAV+MAP  ILA+QH   ++   +   +++EI+TG   
Sbjct: 296 DVGAGKTLVAFMALLRAVEAGGQAVLMAPTEILARQHLMGLQPLAEQAGVVLEILTGRDK 355

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            A RR  L  +  G   I++GTHA+FQ  + +  L L +VDEQHRFGV+QRL+L +K   
Sbjct: 356 GAERRAKLAALERGDIQILVGTHAVFQADVSFADLRLAVVDEQHRFGVRQRLELGRKGRL 415

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+MTATPIPR+L L   GD+D+S + EKP GR+ I+T ++  +R+DEVIER++  +S
Sbjct: 416 ADVLVMTATPIPRSLALAQYGDMDVSILDEKPPGRQAIRTALVSTSRMDEVIERMRHAIS 475

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKN 539
           EG++ YW+CP +EE + S+  +  +RF  L   F    + ++HG+M   +K++ M +F+ 
Sbjct: 476 EGRQCYWVCPLVEESEVSDLTAAEDRFKRLRAAFGEGVVGLVHGQMPPAEKDAAMRAFQT 535

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  K+L+ATTVIEVG+DV +A+I+++E AE FGLAQLHQLRGRVGRGE  S+C+L+Y  P
Sbjct: 536 GETKVLVATTVIEVGVDVPNATIMVVERAEIFGLAQLHQLRGRVGRGEGASTCLLMYQAP 595

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RL VL+ +EDGF+IAE DLK R  G+++G  QSG+P+F +A  E    LL +A
Sbjct: 596 LSETGRQRLEVLRESEDGFVIAETDLKMRGTGDLIGTAQSGVPRFRVADLERQAGLLAVA 655

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           + DA+ +LT DP L   RG+++R+LL+L + +EA + I  G
Sbjct: 656 QSDARKLLTDDPTLEGPRGKAVRLLLWLMRQDEAIRLISVG 696


>gi|188583859|ref|YP_001927304.1| ATP-dependent DNA helicase RecG [Methylobacterium populi BJ001]
 gi|179347357|gb|ACB82769.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 729

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 315/706 (44%), Positives = 447/706 (63%), Gaps = 10/706 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           +RPS L+PLFAP     GVG K +  + K++        R  DLLF+ P S + R     
Sbjct: 28  LRPSILDPLFAPARGLPGVGPKIAPLIEKLLGS-EERPARVADLLFHLPQSGVARPLCGS 86

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I +      VT+   +  H    L KR  +++L+ DGTG+I+L+FF      ++ +   G
Sbjct: 87  IRDAPTGEPVTLGVTVVAHRPPMLGKR-AFRVLVEDGTGDISLVFFGMPRGRIEKMLPIG 145

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+G+I        MVHP  I   +   + P +E +Y    GL+  +  KI+  AL 
Sbjct: 146 AHRYVSGRIDLWDGTRQMVHPSRILDEAGLASLPAVEPIYGATEGLTSRVISKIVHGALD 205

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW------TSPARERLAYDELL 234
           RLPVLPEW +   L +  FP  AEA  I H P +A            SPAR+RLAYDELL
Sbjct: 206 RLPVLPEWQDPAYLARNRFPPFAEALRIEHRPEEAPPPPVEGQAPPASPARKRLAYDELL 265

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A Q+AL L+R + +++ G     +G + +++   +PF+ T +Q  A+++I  DM+ + RM
Sbjct: 266 ASQLALALVRARQRRKAGRVNAGDGHLKEQVAAALPFALTGAQARAVEEIRADMAAERRM 325

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           LR+LQGDVGSGKT VAL+AMA+AVEAG QA +MAP  ILA+QHYE +       ++   +
Sbjct: 326 LRLLQGDVGSGKTAVALLAMASAVEAGRQAALMAPTEILARQHYERLVPLAGAMRL--RL 383

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG    A RR  L  +A G+  I++GTHALFQ+++ +  L L +VDEQHRFGV QRL L
Sbjct: 384 LTGRDRAAERRATLADLAAGEIDIVVGTHALFQEAVAFRDLGLAVVDEQHRFGVHQRLAL 443

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K  A  +L+MTATPIPRTL LT  GD+D+S + EKPAGR+PIKT+ +P+ RIDEV+  
Sbjct: 444 GAKGEAVDILVMTATPIPRTLALTFFGDMDVSVLDEKPAGRQPIKTITVPVERIDEVVAG 503

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L   L  G + YWICP + E +  +  +  ERF  L +HF  ++ +IHG+M   +K++ M
Sbjct: 504 LHRALQAGDRVYWICPLVAESEYVDLAAAAERFEDLQKHFGDAVGLIHGKMPGPEKDAAM 563

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           ++F  G  ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC+L
Sbjct: 564 EAFAAGRTRVLVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSCLL 623

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL + +  RL +++ +EDGF IAEEDL+ R EGE+LG +QSGM  F +A+ E    
Sbjct: 624 LYRGPLGQVAKARLEMMRGSEDGFRIAEEDLRLRGEGEVLGTRQSGMAAFRLARLESDGD 683

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           LLE AR DA+ I+ +DP L+S RG+++R+LLYL++   A + I AG
Sbjct: 684 LLEAARDDARLIIERDPRLSSERGRALRVLLYLFEREAAIRLIGAG 729


>gi|254563488|ref|YP_003070583.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Methylobacterium extorquens DM4]
 gi|254270766|emb|CAX26771.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Methylobacterium extorquens DM4]
          Length = 729

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 314/706 (44%), Positives = 446/706 (63%), Gaps = 10/706 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           +RPS L+PLFAP     GVG K +  + K++        R  DLLF+ P S + R     
Sbjct: 28  LRPSLLDPLFAPARGLPGVGPKIAPLIEKLLGS-EERPARVADLLFHLPQSGVARPLCGS 86

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I +      VT+   +  H    L KR  +++L+ DGTG+I+L+FF      ++ +   G
Sbjct: 87  IRDAPTGEPVTLGVTVVAHRPPMLGKR-AFRVLVEDGTGDISLVFFGMPRGRIEKMLPLG 145

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+G+I        MVHP  I       + P +E +Y    GL+  +  +I+  AL 
Sbjct: 146 SHRYVSGRIDLWDGTRQMVHPSRILDQEGLASLPAVEPIYGATEGLTSRVISRIVHGALD 205

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW------TSPARERLAYDELL 234
           RLPVLPEW +   L +  FP  AEA  I H P +A            SPAR+RLAYDELL
Sbjct: 206 RLPVLPEWQDASYLARNRFPPFAEALRIEHRPEEAPPPPVEGQAPPASPARKRLAYDELL 265

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A Q+AL L+R + +++ G     +G + +++   +PF+ T +Q  A+++I  DM+ + RM
Sbjct: 266 ASQLALALVRARQRRKPGRVNAGDGHLKERVEAALPFALTGAQARAVEEIRADMAAERRM 325

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           LR+LQGDVGSGKT VAL+AMA+AVEAG QA +MAP  ILA+QHYE +       ++   +
Sbjct: 326 LRLLQGDVGSGKTAVALLAMASAVEAGRQAALMAPTEILARQHYERLVPLAGAMRL--RL 383

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG    A RR  L  +A G+  I++GTHALFQ+S+ +  L L +VDEQHRFGV QRL L
Sbjct: 384 LTGRDRAAERRATLADLAAGEIDIVVGTHALFQESVAFRDLGLAVVDEQHRFGVHQRLAL 443

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K  A  +L+MTATPIPRTL LT  GD+D+S + EKPAGR+PIKT+ +P+ RIDEV+  
Sbjct: 444 GAKGEAVDILVMTATPIPRTLALTFFGDMDVSVLDEKPAGRQPIKTITVPVERIDEVVGG 503

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L   L+ G + YWICP + E +  +  +  ERF  L +HF  ++ +IHG+M   +K++ M
Sbjct: 504 LHRALAAGDRVYWICPLVAESEYVDLAAAAERFEDLQKHFGDAVGLIHGKMPGPEKDAAM 563

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           ++F  G  ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC+L
Sbjct: 564 EAFAAGRTRVLVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSCLL 623

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL + +  RL +++++EDGF IAEEDL+ R EGE+LG +QSG   F +A+ E    
Sbjct: 624 LYRGPLGQVAKARLEMMRSSEDGFRIAEEDLRLRGEGEVLGTRQSGAAAFRLARLETDGD 683

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           LLE AR DA+ I+ +DP L S RG+++R+LLYL++   A + I AG
Sbjct: 684 LLEAARDDARLIVERDPRLASERGRALRVLLYLFEREAAIRLIGAG 729


>gi|56696563|ref|YP_166920.1| ATP-dependent DNA helicase RecG [Ruegeria pomeroyi DSS-3]
 gi|56678300|gb|AAV94966.1| ATP-dependent DNA helicase RecG [Ruegeria pomeroyi DSS-3]
          Length = 696

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 299/700 (42%), Positives = 435/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +   + +    +    R  DLLF  P S +DR  R  I
Sbjct: 4   RPEQLFPLFAGLETLEGVGPKTAQLFAHL----DVETPR--DLLFSLPYSVVDRRRRDTI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                   +T+   +  H   +  +   Y+I + D   +  L+FF+ + + LK V  EG 
Sbjct: 58  RGADLPATLTVEVTVGAHRPAR-GRGGAYRIFVEDAQADFQLVFFHARGDYLKKVLPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP +I   ++    P  E VY L  G+S     K    AL+R
Sbjct: 117 RRVVSGKVELFDGMANMVHPDHILPVAEAGEIPEFEPVYPLTQGVSQRTAFKAARSALAR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L +WI+  L  ++ +P  A+A    H P+   D   T+PAR RLAYDEL A Q+ L 
Sbjct: 177 LPDLADWIDPALRAREGWPDWADAMRAAHAPQGLDDVAATAPARMRLAYDELFAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R++ +K  GI     G +  ++L ++P+ PT +Q  AI++I  DM+   RM R+LQGD
Sbjct: 237 LARRRERKARGISSVATGALQSRVLASLPYRPTNAQARAIEEIAADMAAPARMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E ++   +   +++E++TG    
Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTEILARQHLEGLRPLAEEAGVVLELLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A RR  L  +  G   I++GTHA+FQ  +++  L L IVDEQHRFGV+QR++L +K    
Sbjct: 357 AERRAKLAALKKGDISILVGTHAVFQADVEFADLRLAIVDEQHRFGVRQRMELAEKGMNA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPI+T +I   R+DEVI+ L+  ++E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTAVISTERMDEVIDHLRRAIAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP ++E + S+  +  +RF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVDESEVSDLTAAEDRFKRLRAVLGEGVVGLVHGQMPPAEKDAAMAAFQTG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +A+I++IE AE FGLAQLHQLRGRVGRGE  S+C+L+Y PPL
Sbjct: 537 ETQVLVATTVIEVGVNVPNATIMVIERAEIFGLAQLHQLRGRVGRGEAASTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    RL VL+ TEDGF IAE DL  R  G+++G  QSG+PKF IA  E H +L+  A+
Sbjct: 597 TEGGRRRLEVLRETEDGFRIAETDLDMRGAGDLIGTAQSGLPKFRIADLERHTALMATAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L QDP+L+S RG++ RILL+L + ++A + I  G
Sbjct: 657 TDARALLAQDPELSSERGRAARILLWLMKQDQAIRLISVG 696


>gi|115524794|ref|YP_781705.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115518741|gb|ABJ06725.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 699

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 314/701 (44%), Positives = 442/701 (63%), Gaps = 3/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA +++  GVG K       +++   A+  R +DLL + P++ IDR  RPK
Sbjct: 1   MRPELLNPLFALVTSLSGVGPKQDKLFRYLLD--RADTPRLVDLLLHLPTTVIDRRARPK 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     +VT+   + +H      + R P+ +  +D +G++ L +F  +   ++ +   
Sbjct: 59  IRDAVPGTVVTLEVTVDRHRPAPPGRSRAPHLVYASDDSGDVVLTYFRAQPGYVEKLLPV 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V+G  +     + +VHP  +   +       I+ VY L  GL++   ++ I +AL
Sbjct: 119 GAKRYVSGTAQMFDGTLQIVHPDRVVDEAGLAQLTGIDPVYPLTEGLALGSLRRAIAQAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           ++LP LPEWI  D+L++  FP +AEA   +H P +  D     P   RLAYDELLAGQ+A
Sbjct: 179 TKLPALPEWISPDVLRRCGFPPLAEALQRVHRPIELTDVLPAGPFWSRLAYDELLAGQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G++  +I+  +P++ T SQ+ A   I +D+ Q  RMLR+LQ
Sbjct: 239 LALVRAQLRRPAGTRNAGDGQLRSRIIDALPYALTPSQQDAAAAIAEDLRQPVRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  E G QA +MAP  ILA+QH + I        +  EI+TG  
Sbjct: 299 GDVGSGKTVVALLAAAAVAEVGKQAALMAPTEILARQHAKTITPLAARAGLNAEILTGRE 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR  L R+A G+ HIIIGTHAL QD + +  L L +VDEQHRFGV++RL LT K  
Sbjct: 359 KGKERRDILARLASGEIHIIIGTHALIQDDVAFNDLALAVVDEQHRFGVRERLALTSKGD 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  VL+++ATPIPRTLVLT  GD+D+S++ EKPAGR+PI T  +P+ R+ EV++ +   L
Sbjct: 419 AVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRAVPMVRLAEVMDAVGRAL 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + GK  YWICP +EE +  +      RF SL E +   + ++HGRM  +DK+SVM  F  
Sbjct: 479 AGGKLVYWICPLVEESEAVDLTDAERRFESLKERYGDRVGLVHGRMRGVDKDSVMAQFAA 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+ATTV+EVG+DV DA+I++IENAE FGLAQLHQLRGR+GRG E S+C+LLY  P
Sbjct: 539 HEIGVLVATTVVEVGVDVPDATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYKDP 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + S  RL V++ T DGF IAEEDLK R EG+ILG +QSG+P + IA+ E H  L+  A
Sbjct: 599 LGEMSAARLRVIRETTDGFRIAEEDLKLRGEGDILGTRQSGLPGYRIARSEFHAQLIAQA 658

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R +A  IL +DP L   RG+++R LLYLY+ +EA   I AG
Sbjct: 659 RDEALRILKEDPKLKGPRGEALRCLLYLYERDEALPLIGAG 699


>gi|218532418|ref|YP_002423234.1| ATP-dependent DNA helicase RecG [Methylobacterium chloromethanicum
           CM4]
 gi|218524721|gb|ACK85306.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 729

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 314/706 (44%), Positives = 445/706 (63%), Gaps = 10/706 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           +RPS L+PLFAP     GVG K +  + K++        R  DLLF+ P S + R     
Sbjct: 28  LRPSLLDPLFAPARGLPGVGPKIAPLIEKLLGS-EERPARVADLLFHLPQSGVARPLCGS 86

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I +      +T+   +  H    L KR  +++L+ DGTG+I+L+FF      ++ +   G
Sbjct: 87  IRDAPTGEPITLGVTVVAHRPPMLGKR-AFRVLVEDGTGDISLVFFGMPRGRIEKMLPLG 145

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+G+I        MVHP  I       + P +E +Y    GL+  +  +I+  AL 
Sbjct: 146 SHRYVSGRIDLWDGTRQMVHPSRILDQEGLASLPAVEPIYGATEGLTSRVISRIVHGALD 205

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW------TSPARERLAYDELL 234
           RLPVLPEW +   L +  FP  AEA  I H P +A           TSPAR+RLAYDELL
Sbjct: 206 RLPVLPEWQDASYLARNRFPPFAEALRIEHRPEEAPPPPVEGQAPPTSPARKRLAYDELL 265

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A Q+AL L+R + +++ G     +G + +++   +PF+ T +Q  A+ +I  DM+ + RM
Sbjct: 266 ASQLALALVRARQRRKPGRVNAGDGHLKERVEAALPFALTGAQARAVDEIRADMAAERRM 325

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           LR+LQGDVGSGKT VAL+AMA+AVEAG QA +MAP  ILA+QHYE +       ++   +
Sbjct: 326 LRLLQGDVGSGKTAVALLAMASAVEAGRQAALMAPTEILARQHYERLVPLAGAMRL--RL 383

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG    A RR  L  +A G+  I++GTHALFQ+S+ +  L L +VDEQHRFGV QRL L
Sbjct: 384 LTGRDRAAERRATLADLAAGEIDIVVGTHALFQESVAFRDLGLAVVDEQHRFGVHQRLAL 443

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K  A  +L+MTATPIPRTL LT  GD+D+S + EKPAGR+PIKT+ +P+ RIDEV+  
Sbjct: 444 GAKGEAVDILVMTATPIPRTLALTFFGDMDVSVLDEKPAGRQPIKTITVPVERIDEVVGG 503

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L   L+ G + YWICP + E +  +  +  ERF  L +HF  ++ +IHG+M   +K++ M
Sbjct: 504 LHRALAAGDRVYWICPLVAESEYVDLAAAAERFEDLQKHFGDAVGLIHGKMPGPEKDAAM 563

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           ++F  G  ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC+L
Sbjct: 564 EAFAAGRTRVLVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSCLL 623

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL + +  RL +++ +EDGF IAEEDL+ R EGE+LG +QSG   F +A+ E    
Sbjct: 624 LYRGPLGQVAKARLEMMRGSEDGFRIAEEDLRLRGEGEVLGTRQSGAAAFRLARLETDGD 683

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           LLE AR DA+ I+ +DP L S RG+++R+LLYL++   A + I AG
Sbjct: 684 LLEAARDDARLIVERDPRLASERGRALRVLLYLFEREAAIRLIGAG 729


>gi|240140977|ref|YP_002965457.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Methylobacterium extorquens AM1]
 gi|240010954|gb|ACS42180.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Methylobacterium extorquens AM1]
          Length = 729

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 314/706 (44%), Positives = 446/706 (63%), Gaps = 10/706 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           +RPS L+PLFAP     GVG K +  + K++        R  DLLF+ P S + R     
Sbjct: 28  LRPSLLDPLFAPARGLPGVGPKIAPLIEKLLGS-EERPARVADLLFHLPQSGVARPLCGS 86

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I +      VT+   +  H    L KR  +++L+ DGTG+I+L+FF      ++ +   G
Sbjct: 87  IRDAPTGEPVTLGVTVVAHRPPMLGKR-AFRVLVEDGTGDISLVFFGMPRGRIEKMLPLG 145

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+G+I        MVHP  I       + P +E +Y    GL+  +  +I+  AL 
Sbjct: 146 SHRYVSGRIDLWDGTRQMVHPSRILDQEGLASLPAVEPIYGATEGLTSRVISRIVHGALD 205

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW------TSPARERLAYDELL 234
           RLPVLPEW +   L +  FP  AEA  I H P +A            SPAR+RLAYDELL
Sbjct: 206 RLPVLPEWQDASYLARNRFPPFAEALRIEHRPEEAPPPPVEGQALPASPARKRLAYDELL 265

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A Q+AL L+R + +++ G     +G + +++   +PF+ T +Q  A+++I  DM+ + RM
Sbjct: 266 ASQLALALVRARQRRKPGRVNAGDGHLKERVEAAMPFALTGAQARAVEEIRADMAAERRM 325

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           LR+LQGDVGSGKT VAL+AMA+AVEAG QA +MAP  ILA+QHYE +       ++   +
Sbjct: 326 LRLLQGDVGSGKTAVALLAMASAVEAGRQAALMAPTEILARQHYERLVPLAGAMRL--RL 383

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG    A RR  L  +A G+  I++GTHALFQ+S+ +  L L +VDEQHRFGV QRL L
Sbjct: 384 LTGRDRAAERRATLADLAAGEIDIVVGTHALFQESVAFRDLGLAVVDEQHRFGVHQRLAL 443

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K  A  +L+MTATPIPRTL LT  GD+D+S + EKPAGR+PIKT+ +P+ RIDEV+  
Sbjct: 444 GAKGEAVDILVMTATPIPRTLALTFFGDMDVSVLDEKPAGRQPIKTITVPVERIDEVVGG 503

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L   L+ G + YWICP + E +  +  +  ERF  L +HF  ++ +IHG+M   +K++ M
Sbjct: 504 LHRALAAGDRVYWICPLVAESEYVDLAAAAERFEDLQKHFGDAVGLIHGKMPGPEKDAAM 563

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           ++F  G  ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC+L
Sbjct: 564 EAFAAGRTRVLVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSCLL 623

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL + +  RL +++++EDGF IAEEDL+ R EGE+LG +QSG   F +A+ E    
Sbjct: 624 LYRGPLGQVAKARLEMMRSSEDGFRIAEEDLRLRGEGEVLGTRQSGAAAFRLARLETDGD 683

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           LLE AR DA+ I+ +DP L S RG+++R+LLYL++   A + I AG
Sbjct: 684 LLEAARDDARLIVERDPRLQSERGRALRVLLYLFEREAAIRLIGAG 729


>gi|163853558|ref|YP_001641601.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163665163|gb|ABY32530.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
          Length = 729

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 314/706 (44%), Positives = 445/706 (63%), Gaps = 10/706 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           +RPS L+PLFAP     GVG K +  + K++        R  DLLF+ P S + R     
Sbjct: 28  LRPSLLDPLFAPARGLPGVGPKIAPLIEKLLGS-EERPARVADLLFHLPQSGVARPLCGS 86

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I +      VT+   +  H    L KR  +++L+ DGTG+I+L+FF      ++ +   G
Sbjct: 87  IRDAPTGEPVTLGVTVVAHRPPMLGKR-AFRVLVEDGTGDISLVFFGMPRGRIEKMLPLG 145

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+G+I        MVHP  I       + P +E +Y    GL+  +  +I+  AL 
Sbjct: 146 SHRYVSGRIDLWDGTRQMVHPSRILDQEGLASLPAVEPIYGATEGLTSRVISRIVHGALD 205

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW------TSPARERLAYDELL 234
           RLPVLPEW +   L +  FP  AEA  I H P +A            SPAR+RLAYDELL
Sbjct: 206 RLPVLPEWQDASYLARNRFPPFAEALRIEHRPEEAPPPPVEGQAPPASPARKRLAYDELL 265

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A Q+AL L+R + +++ G     +G + +++   +PF+ T +Q  A+++I  DM+ + RM
Sbjct: 266 ASQLALALVRARQRRKPGRVNAGDGHLKERVEAALPFALTGAQARAVEEIRADMAAERRM 325

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           LR+LQGDVGSGKT VAL+AMA+AVEAG QA +MAP  ILA+QHYE +       ++   +
Sbjct: 326 LRLLQGDVGSGKTAVALLAMASAVEAGRQAALMAPTEILARQHYERLVPLAGAMRL--RL 383

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG    A RR  L  +A G+  I++GTHALFQ+S+ +  L L +VDEQHRFGV QRL L
Sbjct: 384 LTGRDRAAERRATLADLAAGEIDIVVGTHALFQESVAFRDLGLAVVDEQHRFGVHQRLAL 443

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K  A  +L+MTATPIPRTL LT  GD+D+S + EKPAGR+PIKT+ +P+ RIDEV+  
Sbjct: 444 GAKGEAVDILVMTATPIPRTLALTFFGDMDVSVLDEKPAGRQPIKTITVPVERIDEVVGG 503

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L   L+ G + YWICP + E +  +  +  ERF  L +HF  ++ +IHG+M   +K++ M
Sbjct: 504 LHRALAAGDRVYWICPLVAESEYVDLAAAAERFEDLQKHFGDAVGLIHGKMPGPEKDAAM 563

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           ++F  G  ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC+L
Sbjct: 564 EAFAAGRTRVLVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSCLL 623

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL + +  RL +++ +EDGF IAEEDL+ R EGE+LG +QSG   F +A+ E    
Sbjct: 624 LYRGPLGQVAKARLEMMRGSEDGFRIAEEDLRLRGEGEVLGTRQSGAAAFRLARLETDGD 683

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           LLE AR DA+ I+ +DP L S RG+++R+LLYL++   A + I AG
Sbjct: 684 LLEAARDDARLIVERDPRLQSERGRALRVLLYLFEREAAIRLIGAG 729


>gi|84686904|ref|ZP_01014788.1| ATP-dependent DNA helicase RecG [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665101|gb|EAQ11581.1| ATP-dependent DNA helicase RecG [Rhodobacterales bacterium
           HTCC2654]
          Length = 696

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 295/700 (42%), Positives = 431/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  G+G K +   + +      + T+  DLLF  P S +DR +R  +
Sbjct: 4   RPEILFPLFAELETLGGIGPKSAKSFAAL------DITQPRDLLFSLPYSGVDRSFRASV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           SEI     VT+   + +H      + RPY++ + D      L+FF+   + +      G+
Sbjct: 58  SEIRPPATVTVEAEVGRHLPPS-ARNRPYRVEMTDALTTFYLVFFHGNPDWISRNLPTGQ 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK+++      M HP +I    +    P  E VY L  G++  L  + + E LSR
Sbjct: 117 RRIVSGKVEEYDGIRQMPHPDHILKPGEADLIPEFEPVYHLAQGVTQKLMFRAVGEVLSR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +  L EWI+  L  ++ +P   EA  I H P+   D    +PAR RLAYDE  A Q+ L 
Sbjct: 177 VQPLIEWIDPGLKAQEHWPDWHEAVRIAHMPQGPDDLSPQAPARRRLAYDEFFAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + ++  G      G +  K+   +PF PT +QE A+ DI  DM+   RM R+LQGD
Sbjct: 237 LARARMRRGKGRASVGTGILQDKVRAALPFQPTGAQERAVADIAADMAAGQRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E ++   +   ++VE++TG    
Sbjct: 297 VGAGKTLVAFLALLVAVEAGGQGVMMAPTEILARQHLESLRPMAETAGVVVELLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR  LE +  G  H+++GTHA+FQD + Y+ L L +VDEQHRFGV +R++L +K  A 
Sbjct: 357 GERRAKLEALKRGDIHVLVGTHAVFQDDVAYHDLRLAVVDEQHRFGVTERMRLGKKGQAA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GR+PI T ++P +R+D+V+ RL+ V  +
Sbjct: 417 DVLVMTATPIPRSLSLAQYGDMDVSILDEKPPGRQPITTSVLPTSRLDDVVARLRGVAQD 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G +AYW+CP + E + S   +  ERF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GGQAYWVCPLVGESEVSELIAAEERFKHLRAALGEGVVGLVHGQMPPAEKDAAMAAFQRG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG+DV +A+I++IE AEHFGLAQLHQLRGRVGR  + S+C+LLY  PL
Sbjct: 537 ETKVLVATTVIEVGVDVPNATIMVIERAEHFGLAQLHQLRGRVGRCSKASTCLLLYQSPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    RL +++ TEDGF IAE DL+ R  G+++G  QSG+PKF++   E    L+ +A+
Sbjct: 597 TETGEKRLGIMRETEDGFRIAEADLEMRGAGDLIGTAQSGLPKFMVGDLEHQAGLMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           KDA+ +L  DPDLTS RG++ R+LL+L + +EA + I  G
Sbjct: 657 KDARKLLADDPDLTSTRGEAARVLLWLMRQDEAIRLISVG 696


>gi|126737639|ref|ZP_01753369.1| ATP-dependent DNA helicase RecG [Roseobacter sp. SK209-2-6]
 gi|126721032|gb|EBA17736.1| ATP-dependent DNA helicase RecG [Roseobacter sp. SK209-2-6]
          Length = 696

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 302/700 (43%), Positives = 437/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA   T +GVG K +  L +I       ET   DLLF  P S +DR  R  I
Sbjct: 4   RPEVLFPLFAAADTLKGVGPKIAQNLQQI-----GLETPR-DLLFLLPYSVLDRRRRSTI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +    I T+   I  H   +  K   Y+I + D   E  L+FF+ ++  L+    EG 
Sbjct: 58  RGLELPGIATVEVTIGSHRPAR-NKGGAYRINVTDQEEEFQLVFFHGRSRYLEAQCPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++   ++  + P  E VY L  G++     K +  AL+R
Sbjct: 117 RRLVSGKLELFDGMAQMVHPDHMLPLAEAEDIPEFEPVYPLTHGVTQKTMTKAVQSALTR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+  L  ++ +PS  EA    H P+  +D +  +  R RLAYDEL A Q+ L 
Sbjct: 177 LPDLSEWIDPALCSREGWPSWREALQQAHVPQGQEDLDPEASPRARLAYDELFAHQVTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R+Q ++  G      G +  ++L  +P+ PT +Q  AI++I  DM++  RM R+LQGD
Sbjct: 237 LARQQERQRKGRASLATGHLQSRVLSALPYRPTGAQARAIEEISADMARDIRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP GILAQQH E +K   ++  +++E++TG    
Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTGILAQQHLEGLKPLAEDAGVVLEVLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RRK L+ +A G   I++GTHA+FQ  + +  L L +VDEQHRFGV+QR++L +K    
Sbjct: 357 TERRKKLDALARGDIQILVGTHAVFQQDVAFKDLRLAVVDEQHRFGVRQRMELAEKGQGA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+++S + EKP GRKP+KT ++   R+ EV+E L+  + E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMEVSVLDEKPPGRKPVKTAVVATERMQEVVEHLRGAIEE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP + E +  +  +  ERFN L        + ++HG+M   +K++ M++F +G
Sbjct: 477 GRQCYWVCPLVGESEVMDLTAAEERFNHLRAALGEGQVGLVHGQMPPAEKDAAMEAFVSG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+LLY PPL
Sbjct: 537 KTKVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGSAQSTCLLLYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL VL+ TEDGF I+E DL+ R  G+++G  QSG+PKF IA  E    L+ +A+
Sbjct: 597 SEGGRRRLEVLRETEDGFRISETDLQMRGAGDVIGTAQSGLPKFRIADLEKQAPLMALAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L +DPDLTS RGQ++R+LL+L + ++A + I  G
Sbjct: 657 SDARALLAKDPDLTSERGQAVRVLLWLMKQDQAIRLISVG 696


>gi|170748080|ref|YP_001754340.1| ATP-dependent DNA helicase RecG [Methylobacterium radiotolerans JCM
           2831]
 gi|170654602|gb|ACB23657.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 750

 Score =  595 bits (1534), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 312/708 (44%), Positives = 449/708 (63%), Gaps = 11/708 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           +RPS L+PLFAP     G+G K +  + +++      E R +DLLF+ P   + R     
Sbjct: 46  LRPSILDPLFAPARALPGIGPKMAPLIERLLGTPE-REARVVDLLFHLPQGGVARKLMGS 104

Query: 61  ISEISEERIVTITGYISQHSSFQL-QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           ISE      VTI   +  H   Q+   RRP+++L+ D +G+I+L+FF      ++ +   
Sbjct: 105 ISEAPTGEPVTIGVTVVAHRPAQVGAGRRPHRVLVEDASGDISLVFFGMPRARVEKMLPL 164

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    +TG+I        MVHP  I   +     P +E VY    GL+     K+ V AL
Sbjct: 165 GAHRYITGRIDLWDGTRQMVHPSRIVDEAGLAELPAVEPVYGATEGLTSRAINKLAVVAL 224

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR----KAKDF---EWTSPARERLAYDE 232
            RLP+LPEW +   L++   P+ A+A  + H P     KA+D       +P+R+RLAYDE
Sbjct: 225 DRLPILPEWQDPAWLERNRLPAFADALRLEHRPEEAPPKAEDPLQPPPATPSRKRLAYDE 284

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA Q+AL L+R + +++ G     +G ++ ++   +PF+ T +Q  A+ +I  D++   
Sbjct: 285 LLASQLALALLRARQRRKAGRVNAGDGALSARLQAALPFALTGAQARAVAEIRADLAAPR 344

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           RMLR+LQGDVGSGKT VAL+AMA+AVEAG QA +MAP  ILA+QH+E +K      ++  
Sbjct: 345 RMLRLLQGDVGSGKTAVALLAMASAVEAGRQAALMAPTEILARQHFERLKPLAGPLRL-- 402

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG    A R+  L  +A G+  I++GTHALFQ+++ +  L L +VDEQHRFGV QRL
Sbjct: 403 RLMTGRDRAAERKSTLADLAAGEIDILVGTHALFQEAVAFRDLGLAVVDEQHRFGVHQRL 462

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L  K  A   L+MTATPIPRTL LT  GD+D+S + EKPAGR+PI+T+ +P  RIDEV+
Sbjct: 463 ALGAKGEAVDFLVMTATPIPRTLALTFFGDMDVSILDEKPAGRQPIRTITLPTERIDEVV 522

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
             L   ++ G++ YWICP +EE +  +  +  ERF+ L +HF  ++ +IHG+M   +K++
Sbjct: 523 AGLARAIAGGERVYWICPLVEESEFVDLAAAAERFDDLRKHFGDAVGLIHGKMPGPEKDA 582

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M  F  G  KLL++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC
Sbjct: 583 AMARFAAGETKLLVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSC 642

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY  PL + S  RL +++ +EDGF IAE DLK R EGE+LG +QSG+  F +A+ E  
Sbjct: 643 LLLYRGPLGQVSRARLEMMRASEDGFRIAEADLKLRGEGEVLGTRQSGLAAFRLARLESD 702

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            +LLE AR DA+ I+ +DP L S RGQ++R+LLYL++   A + I AG
Sbjct: 703 AALLEAARDDARLIVERDPGLRSPRGQALRVLLYLFEREAAIRLIGAG 750


>gi|254467243|ref|ZP_05080654.1| DEAD/DEAH box helicase domain protein [Rhodobacterales bacterium
           Y4I]
 gi|206688151|gb|EDZ48633.1| DEAD/DEAH box helicase domain protein [Rhodobacterales bacterium
           Y4I]
          Length = 696

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 297/700 (42%), Positives = 438/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA   T +GVG K +  L++I    +    R  DLLF  P S +DR  R  I
Sbjct: 4   RPEILFPLFAGAETLQGVGPKTAQNLTQI----DIETPR--DLLFSLPYSVVDRRRRDTI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +    ++T+   I +H   +  +   Y++ + D   E  L+FF+ ++  L+    EG 
Sbjct: 58  RGVDLPAVLTVEVTIGRHRPAR-SRGGAYRVHVEDAETEFQLVFFHGRSRYLEAQLPEGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++    +    P  E VYSL  G+S     K    ALSR
Sbjct: 117 RRVVSGKLELFDGIAQMVHPDHMLPVEEAHEIPEFEPVYSLTHGVSQKTMYKAAQSALSR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P L EWI+   + ++++P+  +A    H P+   D    SPAR RLAYDEL + Q+ L 
Sbjct: 177 MPHLEEWIDPAQMLRENWPAWHDALQSAHAPQGPDDLSPQSPARARLAYDELFSHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R+  +K  GI  +  G++  ++L+ +P+ PT +Q  AI++I  DM+   RM R+LQGD
Sbjct: 237 LARQTERKSRGIESHATGRLQSRVLKALPYRPTNAQARAIEEISADMASPKRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP GILAQQH E +    ++  +++EI+TG    
Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTGILAQQHMEGLAPLAEDAGVVIEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R+  L  +  G   I++GTHA+FQ  +++  L L IVDEQHRFGV+QR++L +K    
Sbjct: 357 AERKAKLAALKRGDIQILVGTHAVFQQDVEFRDLRLAIVDEQHRFGVRQRMELAEKGKGA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKP+KT +I   R+ EV++ L+  ++E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPVKTAVISTERMQEVVDHLRKAIAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP ++E + S+  +  ERF  L       IA ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVDESELSDLTAAEERFKHLRAVLGEGIAGLVHGQMPPAEKDAAMAAFQEG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+L+Y PPL
Sbjct: 537 KTKVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGSAESTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    RL VL+ TEDGF I+E DL+ R  G+++G  QSG+P+F IA  E    L+E+A+
Sbjct: 597 TEGGRKRLEVLRETEDGFRISETDLQMRGAGDMIGTAQSGLPRFRIADLERQAGLMEVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L S RG++ R+LL+L + ++A + I  G
Sbjct: 657 SDARALLAADPKLESARGKAARVLLWLMKQDQAIRLISVG 696


>gi|158423349|ref|YP_001524641.1| helicase [Azorhizobium caulinodans ORS 571]
 gi|158330238|dbj|BAF87723.1| helicase [Azorhizobium caulinodans ORS 571]
          Length = 698

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 307/701 (43%), Positives = 440/701 (62%), Gaps = 4/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLFAPL+T  G+G K      +++   N    R IDLLF+ PS  IDR  RP 
Sbjct: 1   MRPALLDPLFAPLTTLPGIGPKMVRPFGRLLGREN---PRVIDLLFHMPSGLIDRRARPT 57

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E   E  VT+   +  HS+    +R P++  ++D +G++T++ F  +   ++ +   G
Sbjct: 58  IFEAEPETDVTLEVRVDGHSAPPPGRRAPHRTFVSDASGDLTVVHFNIERARIERLLPVG 117

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               + G++        M HP  I   +     P +E  Y L  GL+    ++ +  AL+
Sbjct: 118 ETRWLCGRVTLYDGMRQMTHPDRILDAAGLAKLPPVEPKYPLTEGLAGGHVRRAMEAALA 177

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           R+P LPE I  +LL++  +PS  EA   IH P    D   T  A ERLA+DEL A Q+ L
Sbjct: 178 RVPELPEAIPPELLERGDWPSFREALKRIHQPETPVDGLPTGRAWERLAFDELYAHQVTL 237

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R+   K  G P   +G++A  IL+ +PF  T +QE A+  I  D++   RMLR+LQG
Sbjct: 238 ALVRQTQVKAGGRPTRGDGRLAAAILKALPFRLTSAQEEALAAIRADLAADTRMLRLLQG 297

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+A AAA+EAG QA +MAP  ILA+QH E I        I V ++TG   
Sbjct: 298 DVGSGKTVVALLAAAAAIEAGRQAALMAPTEILARQHLETIAPLAAAAGIEVAVLTGREK 357

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R   LE +A G+  +++GTHAL QD + +  L L IVDEQHRFGV+QRL  ++K  A
Sbjct: 358 GRTRAGILEGLASGRIGLVVGTHALIQDDVAFADLALAIVDEQHRFGVEQRLTFSRKGAA 417

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +LLMTATPIPRTLVLT  GD+D S++ EKP GRKP+ T  + + R+DEV+  L   L 
Sbjct: 418 VDMLLMTATPIPRTLVLTLFGDMDSSELREKPPGRKPVDTRSVSLERLDEVVGALGRQLR 477

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           +G +AYWICP +EE   S+  +  ER   L + F   ++ ++HGRMS  DK++ M  F +
Sbjct: 478 DGAQAYWICPLVEESDTSDLAAATERAAHLKKVFGEKAVELVHGRMSGADKDAAMARFAS 537

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L+ATTV+EVG++V +A++++IE+AE FGLAQLHQLRGRVGRGE+ S+C+LL+  P
Sbjct: 538 GEARILVATTVVEVGVNVPNATLMVIEHAERFGLAQLHQLRGRVGRGEKASTCLLLFRGP 597

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+ S  RL++L+ +EDGF IAEEDL+ R EG++LG KQSG+P F +A+ E+H +L+  A
Sbjct: 598 LSETSKARLAILRESEDGFRIAEEDLRLRGEGDVLGTKQSGLPGFKVARMEVHGALVSQA 657

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R  A  ++  +PDL    G+ +R LLY+ + + A + + AG
Sbjct: 658 RDAAARLVPGNPDLEGPEGERVRTLLYVQERDAAVRLLSAG 698


>gi|86138406|ref|ZP_01056980.1| ATP-dependent DNA helicase RecG [Roseobacter sp. MED193]
 gi|85824931|gb|EAQ45132.1| ATP-dependent DNA helicase RecG [Roseobacter sp. MED193]
          Length = 696

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 297/700 (42%), Positives = 437/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA   T +GVG K +  L++I       ET   DL F  P S +DR  R  I
Sbjct: 4   RPEILFPLFAGAETLKGVGPKTAQSLAQI-----GLETPR-DLAFSLPHSILDRRRRDTI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +    I T+   + +H   +  +   Y+I + D   E  L+FF+ ++  L+    EG 
Sbjct: 58  KGLDLPAIATVEVEVGRHLPAR-NRGGAYRINVADQEVEFQLVFFHGRSRYLEAQCPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++   ++  + P  E VY L  G++     K  + AL R
Sbjct: 117 RRLVSGKVELFDGVAQMVHPDHMLPLAEAEDIPEYEPVYPLTHGVTQKTMTKAALSALER 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+ +  +++ +P+  EA N  H+P+  +D    +P R RLAYDEL A Q+ L 
Sbjct: 177 LPELAEWIDPEQARREGWPAWKEALNAAHHPQSLEDLSPEAPIRTRLAYDELFAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R+  +K  GI     G++   +L  +P+ PT +QE AI++I +DM++  RM R+LQGD
Sbjct: 237 LARQAERKSPGIVSEATGRLQAPVLAALPYRPTGAQERAIREISEDMARDRRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A+  AVEAGGQ V+MAP GILAQQH+E ++   +   +++E++TG    
Sbjct: 297 VGSGKTLVAFMALLVAVEAGGQGVMMAPTGILAQQHFEGLRPLAEQAGVVLELLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A RR  L  +  G   I++GTHA+FQ  + + +L L IVDEQHRFGV+QR++L +K    
Sbjct: 357 AERRAKLAALEAGDIQILVGTHAVFQQDVVFRRLHLAIVDEQHRFGVRQRMELAEKGKGA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKP+KT ++   R++EV+  L+  + E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPVKTAVLSTERMEEVVNHLRRAIGE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP + E +  +  +  ERF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVGESEVMDLIAAEERFKHLRATLGEGVVGLVHGQMPPAEKDAAMAAFQKG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+L+Y PPL
Sbjct: 537 ETKVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGSAESTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL VL+ +EDGF I+E DL+ R  G+++G  QSG+P+F IA  E   SL+ +A+
Sbjct: 597 SEGGRRRLEVLRESEDGFKISETDLQMRGAGDVIGTAQSGLPRFHIADLERQASLMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +LT DP L S RGQ+ R+LL+L + ++A + I  G
Sbjct: 657 SDARSLLTMDPGLQSDRGQAARVLLWLMKQDQAIRLISVG 696


>gi|254477381|ref|ZP_05090767.1| DEAD/DEAH box helicase domain protein [Ruegeria sp. R11]
 gi|214031624|gb|EEB72459.1| DEAD/DEAH box helicase domain protein [Ruegeria sp. R11]
          Length = 696

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 301/700 (43%), Positives = 433/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA + T +GVG K +  LS+I     A E+   DLL+  P S +DR  R  I
Sbjct: 4   RPEILFPLFAGVETLQGVGPKTAQHLSQI-----AIESPR-DLLYSLPYSVVDRRRRTTI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +    + T+   I  H   +  K   Y+I + D   E  L+FF+ ++  L+    EG 
Sbjct: 58  QGLDFPSVATVEVTIGTHRPAR-NKGGAYRINVTDAETEFQLVFFHGRSRYLEAQLPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++   +   + P  E VY L  G+S     K    AL R
Sbjct: 117 RRVVSGKLELFDGLAQMVHPDHMVALADADDIPDFEPVYHLTHGVSQKTMFKAAQSALQR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP LPEWI+   ++K+ +P+  +A    H+P    D    +PAR RLAYDEL + Q+ L 
Sbjct: 177 LPDLPEWIDPSQMRKEEWPAWQDALTKSHSPEGPDDLMAEAPARARLAYDELFSHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R+Q +   G      G++  ++L  +P+ PT +Q  AI++I  DM++  RM R+LQGD
Sbjct: 237 LARQQDRALPGRVSLATGQLQSRVLSALPYRPTGAQARAIEEISADMARPERMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E ++   ++  +++EI+TG    
Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTEILARQHLEALRPLAEDAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R+     +A G  HI++GTHALFQ  + +  L L IVDEQHRFGV+QR++L +K    
Sbjct: 357 RERKAKCAALARGDIHILVGTHALFQPDVAFRDLRLAIVDEQHRFGVRQRMELAEKGKGA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L LT  GD+++S + EKP GRKPIKT II   R+DEV+  L+  + E
Sbjct: 417 DVLVMTATPIPRSLALTQYGDMEVSVLDEKPPGRKPIKTAIISTERMDEVVSHLRRAIDE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE +  +  +  ERF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVEESEVMDLTAAEERFKRLRAVLGDGVVGLVHGQMPPAEKDAAMAAFQAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+LLY  PL
Sbjct: 537 ETKVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGSADSTCLLLYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           SK    RL +L+ TEDGF I+E DL+ R  G+++G  QSG+P+F IA  E    L+ +A+
Sbjct: 597 SKGGQKRLEILRETEDGFRISETDLEMRGAGDVIGTAQSGLPRFRIADLERQAGLMSVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDL+S RGQ+ R+LL+L + ++A + I  G
Sbjct: 657 SDARALLASDPDLSSPRGQAARVLLWLMKQDQAIRLISVG 696


>gi|148255541|ref|YP_001240126.1| ATP-dependent DNA helicase RecG [Bradyrhizobium sp. BTAi1]
 gi|146407714|gb|ABQ36220.1| ATP-dependent DNA helicase RecG [Bradyrhizobium sp. BTAi1]
          Length = 700

 Score =  588 bits (1517), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 317/703 (45%), Positives = 446/703 (63%), Gaps = 6/703 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLFAP++T  GVG K    L  +++C  +   R +DLL + P+S IDR  RPK
Sbjct: 1   MRPAILNPLFAPVTTLSGVGPKQDKLLRYLLSC--SETPRLVDLLLHLPASVIDRRNRPK 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           + +     +VT+   + +H   +   R PY +  +D TG++ L FF  K + ++ +   G
Sbjct: 59  VRDAEVGTVVTLEVTVDRHRPSR-NARAPYLVYASDETGDVVLTFFRPKGDYIEKMLPVG 117

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            K  V+G ++       +VHPH I   +       I+ VY L  GL++   ++ I  AL+
Sbjct: 118 AKRYVSGTVQMYDGVPQIVHPHPILDEAAFAKLSGIDPVYPLTEGLALGSLRRAISAALT 177

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           +LP LPEWI  ++L + +FP + EA   +H P++  D    +P   RLA+DELLAGQ+AL
Sbjct: 178 KLPDLPEWISPEVLNRCNFPPLKEALTRVHGPQELTDILPENPFWSRLAFDELLAGQLAL 237

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R Q ++  G     +G + +KI+  +P++ T SQ  A+  I  D+ +  RMLR+LQG
Sbjct: 238 ALVRAQLRRPAGNRHAGDGHLRRKIIDALPYALTNSQAGALDAIATDLEKPVRMLRLLQG 297

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+A AA  EAG QA +MAP  ILA+QH + I    +   + V I+TG   
Sbjct: 298 DVGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHAKTIAPLAERAGMNVAILTGREK 357

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR  L R+  G+  ++IGTHAL QD + +  L L IVDEQHRFGV++RL LT K  A
Sbjct: 358 GKERRDILGRLEAGEIDLLIGTHALIQDDVIFKSLALAIVDEQHRFGVRERLALTSKGEA 417

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+++ATPIPRTLVLT  GD+DIS++ EKPAGR+PI T ++   R+ EVI+ +   L 
Sbjct: 418 VDVLVLSATPIPRTLVLTYFGDMDISELREKPAGRQPIDTRVVADTRLGEVIDAVGRALQ 477

Query: 481 EGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            GK  YWICP +EE +     +  +  +R  SL E F   + ++HG+M   +K+ VM  F
Sbjct: 478 AGKLVYWICPLVEESEAEGIDHLTNATDRCESLRERFGDKVGLVHGKMKGSEKDEVMGRF 537

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTV+EVG+DV  A+I++IENAE FGLAQLHQLRGR+GRG E S+CILLYH
Sbjct: 538 AAHELRLLVATTVVEVGVDVPAATIMVIENAERFGLAQLHQLRGRIGRGSEASTCILLYH 597

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PL + S  RL+V++ T DGF IAEEDLK R EG++LGI+QSG+P + IA+PE+H  L+ 
Sbjct: 598 EPLGQMSKARLAVIRETTDGFRIAEEDLKLRGEGDVLGIRQSGLPGYRIARPEVHAQLIT 657

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            AR +A  IL +DP L   R  ++R LLYLY+ +EA   + AG
Sbjct: 658 QARDEALRILKEDPKLKGPRSDALRCLLYLYERDEAIPLLTAG 700


>gi|154248335|ref|YP_001419293.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154162420|gb|ABS69636.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 697

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 296/700 (42%), Positives = 422/700 (60%), Gaps = 3/700 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFAPL++  G+G K      +++        R +DLLF+ PS F+DR  RP 
Sbjct: 1   MRPDALLPLFAPLTSLPGIGPKLVRPYGRLLG---REMPRVLDLLFHMPSGFVDRRARPT 57

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+E   E  VT+   +  H S     R P++  ++D +G++ ++ F      L+++   G
Sbjct: 58  IAEALPETDVTLEVRVDGHQSPPPGSRAPHRTFVSDASGDMVVVHFKMDPARLEHMLPVG 117

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           +   + G+I        M HP  +   +     P +E VY L  GL+    ++ I  AL 
Sbjct: 118 QTRWLCGRISLYDGMRQMTHPDRVLDAAGLARLPAVEQVYPLVEGLAAGHVRRAIEAALQ 177

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           R+P LPEWI +DLL ++ +P+  EA   +H P    +         RLA+DEL A QI L
Sbjct: 178 RVPELPEWIPQDLLAERGWPAFREALVRVHRPANPHEATPAGGPWRRLAFDELFAHQITL 237

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R Q +K  G     +G I+ ++L  +PF  T  QE A++ I  D++   RMLR+LQG
Sbjct: 238 ALLRAQEEKAGGRSTVGDGHISAQLLSALPFRLTAGQEQAVEAIRADLAADTRMLRLLQG 297

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+A A   EAG Q  +MAP  ILA+QH+E I        + V ++TG   
Sbjct: 298 DVGSGKTVVALMAAATVAEAGRQTALMAPTEILARQHHETIAPLADAAGLSVSVLTGREK 357

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R   L  + HG+  ++IGTHAL QD + +  L LV+VDEQHRFGV+QRL L +K  A
Sbjct: 358 GRARTAVLTELQHGRTDMVIGTHALIQDDVIFRDLALVVVDEQHRFGVEQRLTLARKGEA 417

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L+MTATPIPRTLVLT  GD+D S++ EKP GR+ I T  IP++R+DEV+      LS
Sbjct: 418 VDMLVMTATPIPRTLVLTLFGDMDSSELREKPPGRQAIDTRAIPLDRLDEVVAAAGRALS 477

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G +AYWICP +EE   S+  +  ERF  L   F   + ++HGRMS   K+  M  F +G
Sbjct: 478 SGARAYWICPLVEETDTSDLAAATERFEVLKSIFGDKVGLVHGRMSGAAKDEAMARFASG 537

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LL+ATTVIEVG++V +A++++IE+AE FGLAQLHQLRGRVGRG++ S C+LLY  PL
Sbjct: 538 ETRLLVATTVIEVGVNVPEATVMVIEHAERFGLAQLHQLRGRVGRGDKPSVCLLLYRAPL 597

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + +  RL++L+ ++DGF +AEEDL+ R EG++LG +QSGMP F  A+ E H   +E AR
Sbjct: 598 GETAKARLAILRESQDGFRLAEEDLRLRGEGDVLGTRQSGMPGFRTARLEFHSGEVEAAR 657

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             A   +  DPDL + +   +  LL+L + + A + + AG
Sbjct: 658 DAAAQRVKADPDLAAPQSGPLHTLLHLAERDAAMRLLSAG 697


>gi|75675707|ref|YP_318128.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
 gi|74420577|gb|ABA04776.1| ATP-dependent DNA helicase RecG [Nitrobacter winogradskyi Nb-255]
          Length = 699

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 296/702 (42%), Positives = 438/702 (62%), Gaps = 5/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANET-RFIDLLFYHPSSFIDRHYRP 59
           MRP+ LNPLF P+++  GVG K       ++     +ET R +DLLF+ P+S +DR  RP
Sbjct: 1   MRPALLNPLFVPVTSLSGVGPKQDRLFRHLLA---RDETPRLVDLLFHLPASVVDRRARP 57

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
           KI +     IVT+   + +H      + R P+ +  +D TG + L +F  +   ++ +  
Sbjct: 58  KIRDAVPGTIVTLEVSVDRHRPAPPGRSRAPHLVYASDETGSVVLTYFRAQPSYVEKLLP 117

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G K  V+G ++     + +VHP  +   +       I+ VY L  GL+    ++ I +A
Sbjct: 118 AGSKRYVSGTVQMFDGTLQIVHPDRVVDEAGLAELSGIDPVYPLTQGLAPGALRRAIAQA 177

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L  LPVLPEW +  +L++  FP +A+A   +H P +  D     P   RLA+DELLAGQ+
Sbjct: 178 LQNLPVLPEWTDPKILRRCGFPPLAQALRRVHVPLELTDTLPEGPFWSRLAFDELLAGQL 237

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G     +G +  +I+  +P++ T SQ+ A+  I++D+ Q  RMLR+L
Sbjct: 238 ALTLVRARLRRPAGNRHAGDGHLRNRIIDALPYALTASQQQAVAAIIEDLRQPVRMLRLL 297

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL+A  A  E+G Q  +MAP  +LA+QH + I    +   + V I+TG 
Sbjct: 298 QGDVGSGKTVVALLAACAVAESGKQTALMAPTEVLARQHIKTIAPLAERAGLRVAILTGR 357

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                RR+   R+A G   +++GTHAL QD + +  L L +VDEQHRFGV++RL LT K 
Sbjct: 358 EKGRERREITARLAEGDIDLLVGTHALIQDEVTFKSLALAVVDEQHRFGVRERLALTTKG 417

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            A  VL+++ATPIPRTLVLT  GD+D+S++ +KPAGR+PI T  +   R+ EVI+ +   
Sbjct: 418 EAVDVLVLSATPIPRTLVLTYFGDMDVSELRDKPAGRQPIDTRAVSDGRLTEVIDAVGRA 477

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +  GK AYWICP +EE    +     +R+ SL   F   + ++HG+M   +K+ VM  F 
Sbjct: 478 VKAGKLAYWICPLVEESDAVDLSDAEQRYQSLKARFGDRVGLVHGKMRGPEKDRVMAQFA 537

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   LL+ATTV+EVG+DV  A+I++IENAE FGLAQLHQLRGR+GRG E S+C+LLY  
Sbjct: 538 AGEINLLVATTVVEVGVDVPAATIMVIENAERFGLAQLHQLRGRIGRGSEPSTCLLLYRE 597

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + S  RL V++ T DGF IAEEDL+ R EG++LG +QSG+P + +A+ ++H  L+ +
Sbjct: 598 PLGEMSAARLRVIRETTDGFRIAEEDLRLRGEGDVLGTRQSGLPGYRVARSDVHAQLITL 657

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR +A  IL Q+P+LT   G+++R LLYL++ +EA   + AG
Sbjct: 658 ARDEALRILKQNPNLTGSHGEALRCLLYLFERDEALPLLGAG 699


>gi|149203842|ref|ZP_01880811.1| ATP-dependent DNA helicase RecG [Roseovarius sp. TM1035]
 gi|149142959|gb|EDM31001.1| ATP-dependent DNA helicase RecG [Roseovarius sp. TM1035]
          Length = 696

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 294/700 (42%), Positives = 433/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  G+G K +  L+ +        TR  DL+   P S +DR  R  +
Sbjct: 4   RPEILFPLFAGLETLEGIGPKTAQALAAL------EITRPRDLILTLPHSGVDRRRRATV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                  IVT+   + QH     +K  PY++++ D      L+FF+ + E L+ +   G 
Sbjct: 58  QGAEMPGIVTVEVTVGQHRPPS-RKGGPYRVVVEDAATSFHLVFFHARDEYLRKMLPTGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK +       +VHP ++    +  + P  E VY L  G++  +  K +  AL R
Sbjct: 117 RRIVSGKAELFDGIAQIVHPDHMLPLEEASDIPDFEPVYPLTAGVTQRVMTKGVHSALMR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+     +  +P  A A    H P++A+D     PARERLAYDEL+A Q+ L 
Sbjct: 177 LPDLTEWIDPVQKAQAGWPDWAAAVRAAHRPQEARDLSPAHPARERLAYDELMAHQMTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + ++  G      G +  ++L  +P++ T +Q  AI +I  DM+   RM R+LQGD
Sbjct: 237 LARSKLRRAKGRATVGTGVLQARVLMALPYALTGAQTRAIAEIAADMAAPQRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA  A+  AVEAGGQ V+MAP  ILA+QH + ++   ++  +++EI+TG    
Sbjct: 297 VGAGKTLVAFKALLIAVEAGGQGVMMAPTEILARQHLQGLRPLAESAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR  L  +A G   I++GTHA+FQ  +++  L L IVDEQHRFGV+QRL+L +K    
Sbjct: 357 TERRAKLAALARGDIQILVGTHAVFQKDVEFSDLRLAIVDEQHRFGVRQRLELGKKGAQA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GR+PIKT +I + RIDEV++ L+  L+E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRQPIKTALISMGRIDEVVDHLRRALAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +  +  S  ERF  L        + ++HG+M   DK++ M +F+ G
Sbjct: 477 GRQAYWVCPLVEESEVVDLSSAEERFKRLRAALGEGVVGLVHGQMPPEDKDAAMAAFQRG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG+DV +ASI++IE AE FGLAQLHQLRGRVGRG+  S+C+L+Y  PL
Sbjct: 537 DTSVLVSTTVIEVGVDVPNASIMVIERAESFGLAQLHQLRGRVGRGQAASTCLLMYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S++   RL+ +++TEDGF I+E DL+ R  G+++G  QSG+P+F IA  E   +L+ +A+
Sbjct: 597 SESGERRLTTMRDTEDGFRISEVDLEMRGAGDLIGTAQSGLPRFRIADLESQSALMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDL S RG++ R+LL+L + ++A + I  G
Sbjct: 657 SDARKLLHDDPDLVSERGRAARVLLWLMEQDQAIRLISVG 696


>gi|254487099|ref|ZP_05100304.1| ATP-dependent DNA helicase RecG [Roseobacter sp. GAI101]
 gi|214043968|gb|EEB84606.1| ATP-dependent DNA helicase RecG [Roseobacter sp. GAI101]
          Length = 696

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 296/700 (42%), Positives = 425/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +   +++         R  DLLF  P S IDR  +  +
Sbjct: 4   RPEPLFPLFAGLETLEGVGPKTAQHFAQL----GIQAPR--DLLFTLPYSGIDRRLQASL 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            +      VT+   +  H +    K   Y+I + D      L+FF+ + +  K    EG 
Sbjct: 58  KDSVLPATVTVAVTVGPHRA-PANKGGAYRIHVEDSGTAFQLVFFHARGDYWKRQLPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+++       MVHP +          P  E VY L +G++  L  K     L+R
Sbjct: 117 RRIVSGRVELFDRMAQMVHPDFAVAEEDADQIPTFEPVYPLTSGITQKLMYKATRATLAR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P   EWI+     +  +P  A A    H+P    D    +P+RERLAYDEL+A Q+ L 
Sbjct: 177 VPPFDEWIDPSQKSQSGWPDFATAVAAAHDPENQSDLSAAAPSRERLAYDELMAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + +++ G     +G++  ++L  +P+ PT +Q  AI +I  DM+   RM R+LQGD
Sbjct: 237 LARARDRRKKGRASVGDGRLQGRVLAALPYKPTGAQTRAISEIAHDMASAQRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+ AAVEAGGQ V+MAP  ILA+QH E +K   +   +++EI+TG    
Sbjct: 297 VGAGKTLVAFMALLAAVEAGGQGVLMAPTEILARQHLEGLKPLAEQAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A RR  L  +  G   I++GTHA+FQ  + +  L L +VDEQHRFGV+QRL+L QK    
Sbjct: 357 AERRSKLAALEKGDIQILVGTHAVFQADVSFGDLRLAVVDEQHRFGVRQRLELGQKGKLA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPI+T ++  +RIDEVI RL+  + E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTALVSTDRIDEVIGRLRAAIDE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-AIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE + S+  +   RF  L       I  ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVEESEVSDLIAADARFKRLRAVLGEGIVGLVHGQMPPAEKDAAMRAFQRG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG+DV +ASI++IE AE FGLAQLHQLRGRVGRG+  S+C+L+Y  PL
Sbjct: 537 ETKVLVATTVIEVGVDVPNASIMVIERAESFGLAQLHQLRGRVGRGQAASTCLLMYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    RL VL+ TEDGF+IAE DLK R  G+++G  QSG+P+F +A  E    L++IA+
Sbjct: 597 TETGRQRLEVLRETEDGFVIAETDLKMRGTGDLIGTAQSGVPRFRVADLERQAGLMQIAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP+L S RG++ R+LL+L + +EA + I  G
Sbjct: 657 SDARKLLADDPELVSPRGKAARMLLWLMRQDEAIRLISVG 696


>gi|182678303|ref|YP_001832449.1| ATP-dependent DNA helicase RecG [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182634186|gb|ACB94960.1| ATP-dependent DNA helicase RecG [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 731

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 313/705 (44%), Positives = 452/705 (64%), Gaps = 5/705 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIIN-CGNANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+PLFA   + +GVG K +L L K +    N+   R IDLLF+ PS  IDR  RP
Sbjct: 27  MRPSLLDPLFASAESLQGVGPKTALLLGKAVGIAANSGGARVIDLLFHLPSGTIDRRERP 86

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           KI+E   +R+VT+   + +H     + + PY++L+ D TG++ L+FF    + ++     
Sbjct: 87  KIAEAPLDRVVTLEVTVVEHRPPPARSKAPYRVLVEDETGDVLLVFFLANPQWIERSLPR 146

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V+GK++       MVHP  +       N P +E +Y    GLS     K I  A 
Sbjct: 147 GEKRWVSGKLELWDGYRQMVHPDRVLDAQGLANLPPVEPIYPTTEGLSQKQIAKAIEAAF 206

Query: 180 S----RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           +    R P LPEW +  L++   FPS ++A   +H+P +       SP R RLA DELLA
Sbjct: 207 AYFTARGPKLPEWHDLSLVKLPVFPSFSDALKALHHPAEPNAIGLESPGRLRLALDELLA 266

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q+AL LMR + ++  G     +G++  KIL  +P+ PT  QE A+ +I  D++   RML
Sbjct: 267 SQLALALMRGKRRRMAGRIAQGDGRLTAKILAGLPYRPTPCQEKALAEIKADLAAPRRML 326

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL+AMA  VEAG QA +MAP  ILA+QHY  +    +NT + + ++
Sbjct: 327 RLLQGDVGSGKTLVALLAMAGMVEAGRQAALMAPTEILARQHYANLSALCENTGLRLALL 386

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG      R K L  +A G+  I+IGTHALFQ+ + ++ L L +VDEQHRFGV QRL L+
Sbjct: 387 TGRDKGTSRAKRLAALAAGEIDILIGTHALFQEDVTFHDLGLAVVDEQHRFGVHQRLALS 446

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K  A  +L+MTATPIPRTLVLT  GD+++S + EKP GR+ I T  +PI RIDEV++ L
Sbjct: 447 DKGEAVDILVMTATPIPRTLVLTFFGDMEVSVLREKPPGRQKIDTRALPIERIDEVVDGL 506

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +L++G +AYW+CP +EE +  +  +V  RF  L   F + + ++HG+M   +K++ M 
Sbjct: 507 HRLLAKGGRAYWVCPLVEESELLDVAAVEARFEDLTSIFGTKVGLLHGKMKAAEKDAAMA 566

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +F +G  ++L+ATTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG   SSC+LL
Sbjct: 567 AFASGETRILVATTVIEVGVDVPEATVMVIEHAERFGLAQLHQLRGRVGRGPGQSSCLLL 626

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PL + +  R+++++ +EDGF IAEEDL+ R EG++LG KQSG+P F IA   +H  L
Sbjct: 627 YKGPLGEIAKARIAIMRESEDGFRIAEEDLRLRGEGDVLGTKQSGLPGFRIADLSVHAQL 686

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           L +AR +A+ ++  +P L   +G+++R+LL L++  EA + + AG
Sbjct: 687 LTLARAEARQMVEDNPKLEGPQGEALRLLLNLFERREAIRLLDAG 731


>gi|146277207|ref|YP_001167366.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555448|gb|ABP70061.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 695

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 298/700 (42%), Positives = 424/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +   + +        TR  DLLF  P S +DR  R  I
Sbjct: 3   RPEILFPLFADLETLDGVGPKTAKAFAGL------GVTRPKDLLFLLPHSAVDRSRRRSI 56

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            E+      T+   I  H   + +K  PY+I + D   E TL+FF+ + + L  +  +G 
Sbjct: 57  REVMPPVTATVEVEIGAHYPPR-RKGGPYRIAVRDAEAEFTLVFFHARGDYLTRLLPQGE 115

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+I+       MVHP ++    +  + P  E VY L  GL+  L  K    AL R
Sbjct: 116 RRLVSGRIEFFDGMAQMVHPDHVLRPEEAADLPACEPVYPLAAGLTQKLVAKAAAAALER 175

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+  L  ++ +P  A A    H P    D   T+ AR RLAYDEL A Q+ L 
Sbjct: 176 LPELAEWIDPALKAREGWPDWATAVRASHAPAAPADVTPTAAARRRLAYDELFAHQLTLT 235

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G      G + ++ L ++PF+PT +Q  A+ +I  DM+   RM R+LQGD
Sbjct: 236 LARATRRRGKGQASVGTGALQRRALDSVPFAPTGAQTRALSEIAADMAAPLRMNRLLQGD 295

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+A AVEAGGQ V+MAP  ILA+QH   +    +   I +E++TG    
Sbjct: 296 VGAGKTLVAFLALAIAVEAGGQGVMMAPTEILARQHLSSLTPLAEAAGIRLELLTGRDKG 355

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R   L  +A G+  +++GTHA+FQ  + ++ L L IVDEQHRFGV QR++L  K  A 
Sbjct: 356 AERASKLAALASGEIGVLVGTHAVFQKDVLFHDLRLAIVDEQHRFGVAQRMELGAKGAAA 415

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GR P+KT ++   R+DEV+  L   ++E
Sbjct: 416 DVLVMTATPIPRSLALAGYGDMDVSVLDEKPPGRSPVKTALVSCERMDEVVASLAHAVAE 475

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +E+ +  ++ S   RF  L        + ++HG+M+  DK++ M  F  G
Sbjct: 476 GRQAYWVCPLVEDSEAVDYASAEARFQHLRAALGEGVVGLVHGQMAPADKDAAMARFVAG 535

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+L+Y PPL
Sbjct: 536 ETRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLMYQPPL 595

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +++   RL++L+ TEDGF IAEEDL  R  G+++G  QSG+P+F IA  E   +L+E+A+
Sbjct: 596 AESGQRRLTILRETEDGFRIAEEDLAIRGAGDLIGTAQSGLPRFRIADLERQAALMELAQ 655

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L S RGQ+ R+LL+L   + A + +  G
Sbjct: 656 SDARKLLNDDPALASPRGQAARLLLWLLDQDRAIRLLSVG 695


>gi|220926924|ref|YP_002502226.1| ATP-dependent DNA helicase RecG [Methylobacterium nodulans ORS
           2060]
 gi|219951531|gb|ACL61923.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 704

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 302/703 (42%), Positives = 439/703 (62%), Gaps = 4/703 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           +RPS L+PLFAP +   G G K ++ + K++     +  R +DLLF+ P   +    +  
Sbjct: 3   LRPSLLDPLFAPATVLPGAGPKMAVLVDKLLGTPE-HPARVVDLLFHLPHGGVAHQLKGS 61

Query: 61  ISEISEERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+       VT+   +  H    Q+  RRPY++L+ D TG+I+L+FF      ++ +   
Sbjct: 62  IAAAPTGEPVTLCVTVVAHRPPQQVGGRRPYRVLVEDATGDISLVFFNMPRARIEKMLPA 121

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  V+G+I+       MVHP  I         P +E +Y    GL+  +  K+   AL
Sbjct: 122 GARRYVSGRIELWDGFRQMVHPARILDEKGFSELPSVEPLYGATEGLTSRVIGKLAQGAL 181

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP--ARERLAYDELLAGQ 237
            RLP LPEW +   L ++S+PS AEA    H P K    E       R RLAYDELLA Q
Sbjct: 182 ERLPDLPEWQDPAWLARQSWPSFAEALRAEHRPDKPPPAEGEPAPATRRRLAYDELLASQ 241

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+R + ++  G     +G+++++I   +PF  T +Q  A+ +I  DM    RMLR+
Sbjct: 242 LALALVRSRMRRPPGRINAGDGELSRRIEAALPFRLTGAQVRALAEIRGDMRSDRRMLRL 301

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT VA++AMA+A+EAG QA +MAP  ILA+QH E ++   +   + + ++TG
Sbjct: 302 LQGDVGSGKTAVAMLAMASAIEAGRQAALMAPTEILARQHAERLRPLAEAAGLPLVLMTG 361

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               A RR  L  +A G   I IGTHALFQ+ + +  L L +VDEQHRFGV QRL L  K
Sbjct: 362 RDRNAERRATLAGLAEGSIPIAIGTHALFQEEVAFRDLGLAVVDEQHRFGVHQRLALGAK 421

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             A  +L+MTATPIPRTL LT  GD+++S + EKPAGR+PI T ++   R+DEV+  L+ 
Sbjct: 422 GAAVDILVMTATPIPRTLALTCFGDMEVSILDEKPAGRQPIATRLVSTERLDEVVAGLER 481

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            L+ G++ YWICP + E + ++  +  ERF  L +HF  ++ ++HG+M   +K+  M+ F
Sbjct: 482 ALARGERVYWICPLVAESEFTDLAAAEERFADLRQHFGEAVGLVHGKMPGREKDEAMERF 541

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             GT ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG   S+C+LLY 
Sbjct: 542 AAGTTRILVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSGASTCLLLYR 601

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PL + +  RL +++ TEDGF IAEEDL+ R EGE+LG +QSG+  F +A+PE    LL 
Sbjct: 602 GPLGQVARARLEMMRETEDGFRIAEEDLRLRGEGEVLGTRQSGLAAFRLARPEADGDLLL 661

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            AR DA+ I+ +DP L S RG+++R LLYL++ + A + + AG
Sbjct: 662 AARDDARLIVERDPALKSERGRALRTLLYLFERDAAVKLLGAG 704


>gi|149915268|ref|ZP_01903796.1| ATP-dependent DNA helicase RecG [Roseobacter sp. AzwK-3b]
 gi|149810989|gb|EDM70828.1| ATP-dependent DNA helicase RecG [Roseobacter sp. AzwK-3b]
          Length = 696

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 295/700 (42%), Positives = 427/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K       + N G     +  DL+F  P S +DR  R  +
Sbjct: 4   RPEALFPLFAGLETLEGVGPK------TVQNLGGLEIEKPRDLVFTLPWSGVDRRKRATV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                  +VT+   + QH +   ++   Y+I + D      L+FF+ + E L+ +   G 
Sbjct: 58  QGAELPGVVTVEVVVGQHRAPS-RRGGAYRITVEDAATAFQLVFFHARDEYLRRILPTGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP +I    +    P  E VY L  G++  + +K    AL+R
Sbjct: 117 RKIVSGKVELFDGVAQMVHPDHILDVDEAEEIPDFEPVYPLTAGVTQKMMRKAAHSALTR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+     +  +P  AEA    H P++A D     PARERLAYDE +A Q+ L 
Sbjct: 177 LPDLAEWIDPAQKAQAGWPDWAEAVRRAHGPQEAADLSAADPARERLAYDEFMAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + ++  G      G +  K+L  +P++ T +Q  AI +I  DM+ + RM R+LQGD
Sbjct: 237 LARSRLRRAKGRATMGTGALQAKVLEALPYALTGAQTRAIAEIAGDMASETRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA  A+  AVEAGGQ V+MAP  ILA+QH + ++   +   +++EI+TG    
Sbjct: 297 VGAGKTLVAFKALLIAVEAGGQGVMMAPTEILARQHLQGLQPLAEAAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A RR  LE +  G   I++GTHA+FQ  + +  L L IVDEQHRFGV+QRL+L +K    
Sbjct: 357 AERRAKLEALQRGDIQILVGTHAVFQKDVDFADLRLAIVDEQHRFGVRQRLELGRKGAQA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPI T ++ I RIDEV++ L+  ++E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPITTALVNIGRIDEVVDHLRRAVAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP ++E +  +  S  ERF  L        + ++HG+M    K+S M +F+ G
Sbjct: 477 GRQAYWVCPLVDESEAVDLSSAEERFKRLRAALGEGVVGLVHGQMPPEQKDSAMAAFQRG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG+DV +ASI++IE AEHFGLAQLHQLRGRVGRG+  S+C+L+Y  PL
Sbjct: 537 ETSVLVSTTVIEVGVDVPNASIMVIERAEHFGLAQLHQLRGRVGRGQAASTCLLMYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL+ +++TEDGF IAE DL+ R  G+++G  QSG+P+F IA  E   +L+ +A+
Sbjct: 597 SEGGERRLTTMRDTEDGFRIAEVDLEMRGAGDLIGTAQSGLPRFRIADLEAQAALMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L   RG++ R+LL+L + ++A + I  G
Sbjct: 657 SDARKLLVDDPALEGDRGRAARVLLWLMEQDQAIRLISVG 696


>gi|89054994|ref|YP_510445.1| ATP-dependent DNA helicase RecG [Jannaschia sp. CCS1]
 gi|88864543|gb|ABD55420.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
          Length = 700

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 290/700 (41%), Positives = 434/700 (62%), Gaps = 9/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  G+G K +       N    +     DL+F  P+  +DR  R  I
Sbjct: 9   RPEILFPLFAGLETLDGIGPKTAK------NYAGLDVETPRDLIFTLPAGGLDRTRRASI 62

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            +++     T+   I  H   + Q R PY+I + D      L+FF+ + + L+     G 
Sbjct: 63  RDVALPGPATVEVTIGTH--IKPQGRGPYRIEVEDAKTSFHLVFFHARGDYLERAHPTGA 120

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  ++GK++       M HP ++    +  + P  E VY L  GL+     K +  AL++
Sbjct: 121 RRVISGKVELYDGIAQMAHPDHMLPPEEAASIPEYEPVYPLSQGLTQRGVHKAVQSALTK 180

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +  L EWI+ +  +++++P+ A+A   +H P+ + D    +  RERLAYDE  A Q+ L 
Sbjct: 181 IEYLGEWIDLETAKERNWPAWADAIQAVHAPQSSSDISRAALPRERLAYDEFFAHQLTLA 240

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   +++ G+    +G++  K+L  +P++PT +Q   IK+I  DM+  +RM R+LQGD
Sbjct: 241 LARATRRRKPGLSSTGDGRLRAKVLTALPYTPTGAQTRTIKEIADDMAAPHRMSRLLQGD 300

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVAL+A+  AVEAGGQAV+MAP  ILA QHY  +K    +  ++ EI+TG    
Sbjct: 301 VGAGKTLVALMALLVAVEAGGQAVMMAPTSILAGQHYLNLKPLADHAGVVCEILTGADKG 360

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R   L  +  G  HI++GTHA+FQD + +  L L +VDEQHRFGV++R++L+QK  A 
Sbjct: 361 RERDAKLNALKRGDIHILVGTHAVFQDDVAFDDLRLAVVDEQHRFGVRERVRLSQKGEAA 420

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L+MTATPIPRTL L   GD+D+S + EKP GR P+KT +I   R+DEV++ ++  L E
Sbjct: 421 DILVMTATPIPRTLSLAQYGDMDLSVLDEKPPGRTPVKTALISTARLDEVVDHMRRALDE 480

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +  +  +  ERF  L   F    +A+IHGRM   +K+++M +FK G
Sbjct: 481 GRQAYWVCPLVEESEVYDATAAEERFKMLRAAFGEGKVALIHGRMKPKEKDAIMAAFKAG 540

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+DV +ASI++IE AE++GLAQLHQLRGRVGRG   S+C+L+Y  PL
Sbjct: 541 ETRVLVATTVIEVGVDVPNASIMVIEQAENYGLAQLHQLRGRVGRGAADSTCLLMYRAPL 600

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
              +  RL V++ TEDGF I+EEDL  R  G+++G  QSG+P+F +A  E   +L+ +A+
Sbjct: 601 GDTATRRLQVMRETEDGFRISEEDLAIRGAGDLIGTAQSGLPRFRVADMESQAALMALAQ 660

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +LT DP L   RGQS R+LL+L + ++A + +  G
Sbjct: 661 TDARALLTLDPALEGARGQSARVLLWLMEQDKAIRLLNVG 700


>gi|163731898|ref|ZP_02139345.1| ATP-dependent DNA helicase RecG, putative [Roseobacter litoralis
           Och 149]
 gi|161395352|gb|EDQ19674.1| ATP-dependent DNA helicase RecG, putative [Roseobacter litoralis
           Och 149]
          Length = 696

 Score =  585 bits (1508), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 295/700 (42%), Positives = 434/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L  LF+ L T  GVG K +   + +      +  R  DLLF  P + +DR  R  I
Sbjct: 4   RPEALFGLFSSLETLDGVGPKTAANFAGL----GVHAPR--DLLFTLPINVLDRQRRESI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +    I T+T  I  H   +  K   Y+I ++D      L+FF+ + +       EG 
Sbjct: 58  EGLEYPAITTVTVTIGAHRPPR-TKGAAYRITVSDAETSFQLVFFHARGDYWARALPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK+++      MVHP YI   S+    P  E VY L +G++  +  K     L  
Sbjct: 117 RRVVSGKLERFDGLPQMVHPDYIVPESEIDAIPSFEPVYPLTSGITQKVMFKASQSVLKL 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P + EWI+   ++K  +P++ +A  + H P+ + D   T+ ARERLAYDE+LA Q+ L 
Sbjct: 177 VPEMAEWIDPGQMRKAEWPNVVQALALAHRPQSSADIAITAAARERLAYDEMLAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   +++ G     +G + Q+++ ++P+  T +Q  A+ D+  +M +  RM R+LQGD
Sbjct: 237 LARLTERQKKGHATRGDGVLQQRLITSLPYPLTGAQLRAVSDVNTNMGEAVRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A+  AVE GGQ V+MAP  ILA+QH + +K   +   + +EI+TG    
Sbjct: 297 VGSGKTLVAFLALLRAVEGGGQGVLMAPTEILARQHLQSLKPLAEKVGVRLEILTGRDTG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R K L+ +A+G   +++GTHA+FQ  + +  L L ++DEQHRFGVQQRL L QK  A 
Sbjct: 357 KERNKKLDDLANGDIGVLVGTHAVFQKGVTFDDLRLAVIDEQHRFGVQQRLALGQKGAAV 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GR PIKT ++ + R+DEV+ RL+ V+ E
Sbjct: 417 DVLVMTATPIPRSLALAQFGDMDVSILDEKPPGRMPIKTALVSVERMDEVVSRLRAVVEE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE +  +  +  ER+  L   F    + ++HG+M   +K++ M  F+ G
Sbjct: 477 GRQCYWVCPLVEESEVVDLTAAEERYKHLRAAFGEGVVGLVHGQMPASEKDAAMARFEAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             KLL+ATTVIEVG++V +A+I++IE AE FGLAQLHQLRGRVGRGE  S+C+L+Y PPL
Sbjct: 537 ETKLLVATTVIEVGVNVPNATIMVIERAEFFGLAQLHQLRGRVGRGEAASTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           SK+   RL VL+ TEDGF+IAE DLK R  G+++G  QSG+P+F IA  E    L+ IA+
Sbjct: 597 SKSGQHRLEVLRQTEDGFVIAETDLKMRGAGDVIGTAQSGLPRFWIADLERQAGLMAIAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L +DP L+S RGQ+ R+LL+L + +E+ + I  G
Sbjct: 657 SDARKLLAEDPGLSSPRGQAARMLLWLLRKDESIRLISVG 696


>gi|114768814|ref|ZP_01446440.1| ATP-dependent DNA helicase RecG [alpha proteobacterium HTCC2255]
 gi|114549731|gb|EAU52612.1| ATP-dependent DNA helicase RecG [alpha proteobacterium HTCC2255]
          Length = 696

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 298/700 (42%), Positives = 444/700 (63%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLF  L+ F G+G K ++ LSK+    N N  R  DLLF  P S + R+    +
Sbjct: 4   RPEILFPLFGQLTQFTGIGPKIAINLSKL----NINSPR--DLLFTLPHSLLMRNKIETV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            +     I+ I   + +H   Q QK RPYKI ++D      L+FF+ +   L ++F  G 
Sbjct: 58  LDAINNDIIIIEIIVDEHLENQ-QKNRPYKINVSDAKASFQLVFFHARKNWLWDLFPIGE 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           K+ ++GK++    +  + HP Y+F    +   P +E +YSL  G++     K   +AL+ 
Sbjct: 117 KVLISGKLEYFDGKAQITHPDYVFKPGNEAQIPTLEPIYSLSAGVTQKTLSKATRQALNL 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP++ EWI   ++ K ++P+   A    H P+      + SP R RLAYDE+LA Q+ L 
Sbjct: 177 LPMINEWISPSIINKFAWPTWVNALKNAHEPKNINHITFDSPNRLRLAYDEMLAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           + R+ ++K  GI       +++K++  IPF  T +Q+  I++I  DMS+  RM R+LQGD
Sbjct: 237 IARENYRKSKGIKNIGNKSLSKKVMEFIPFELTNAQKRVIEEIRNDMSEPFRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTL+A + M  A+EAGGQAVIMAP  IL +QH + +K   +   I++E ++G    
Sbjct: 297 VGSGKTLIAFLCMVTAIEAGGQAVIMAPTEILTKQHEDTLKPLAEKAGIVLESLSGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R+  +E IA G+  II+GTHA+FQ+SI+Y  L L I+DEQHRFGV+QR+ L  K  A 
Sbjct: 357 KERKSKIEAIATGKIQIIVGTHAVFQESIKYNDLRLAIIDEQHRFGVRQRMDLGNKGDAV 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L+MTATPIPR+L LT+ GD+++S++ EKP GRKPI TV++  +RI EVI+RLKV +  
Sbjct: 417 DILIMTATPIPRSLALTNYGDMELSEVDEKPIGRKPINTVMVSSSRILEVIDRLKVAIET 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNG 540
           G + YW+CP +EE +     S  +R N+L +    ++I ++HG+MS  +K+ VM  F + 
Sbjct: 477 GNQIYWVCPLVEESEFLELTSAEDRANNLSKVLGKNNIGLVHGKMSGEEKDRVMSDFVDN 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG+DV +A+II+IE++E FGL+QLHQLRGRVGRG + S+C+++Y PPL
Sbjct: 537 KIKILVATTVIEVGVDVPNATIIVIEHSERFGLSQLHQLRGRVGRGADASTCLMIYEPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            K +  RL  ++ T DGF IA  DLK R  G++LG+ QSG+PKF +A  E    L+E+A+
Sbjct: 597 GKTAKKRLEAIRETNDGFKIANVDLKLRGAGDVLGVSQSGLPKFRMADIETQSHLMEMAK 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            +A+ I+T DP L S +G+++R LLY+   +E  + +  G
Sbjct: 657 DEARLIMTNDPSLNSQQGKALRNLLYIMGADEYIKLLSVG 696


>gi|260433790|ref|ZP_05787761.1| ATP-dependent DNA helicase RecG [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417618|gb|EEX10877.1| ATP-dependent DNA helicase RecG [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 696

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 296/700 (42%), Positives = 438/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +  L ++       ET   DLLF  P + IDR  R  I
Sbjct: 4   RPEQLYPLFAGLETLDGVGPKTARLLGQM-----GLETPR-DLLFALPYAVIDRRRRDTI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +     +T+   +  H   +  +   Y++ + D   +  L+FF+ + + LK +  EG 
Sbjct: 58  RGVDLPATLTVEVTVGAHRPPR-NRGGAYRVFVQDSQSDFQLVFFHARGDYLKKILPEGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  ++G+++       MVHP ++    Q  + P  E VY L  G++     K    AL+R
Sbjct: 117 RRVISGRLELFDGVAQMVHPDHMVPVDQAGSIPEFEPVYHLTQGVTQKTAYKAAQSALAR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P L EW +  L+ ++ +P   EA    H+PR A D    +PARERLAYDEL A Q+ L 
Sbjct: 177 VPDLAEWADPALVDRRGWPGWPEAIRAAHSPRGADDVAPFAPARERLAYDELFAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R++ +K  GI     G +  K+L+N+P+ PT++Q+ AI++I  DM+   RM R+LQGD
Sbjct: 237 LARQRERKSRGIVSVGTGALQSKVLKNLPYQPTQAQQRAIREIAADMASDARMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E ++   ++  +++EI+TG    
Sbjct: 297 VGAGKTLVAFMALLIAVEAGGQGVMMAPTEILARQHLEGLRPLAEDAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A RR  L  +  G   I++GTHA+FQ  + +  L L IVDEQHRFGV+QR++L++K    
Sbjct: 357 AERRAKLAALKAGDIQILVGTHAVFQSDVAFKDLRLAIVDEQHRFGVRQRMELSRKGQGA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKP+KT I+   R+DEV++ L+  + +
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPVKTAIVSTQRMDEVVDHLRRAIDD 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP ++E + S+  +  ERF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVDESEVSDLTAAEERFKHLRAQLGEGVVGLVHGQMPPSEKDAAMAAFQAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +A+I++IE AE FGLAQLHQLRGRVGRGE  S+C+L+Y PPL
Sbjct: 537 RTKVLVATTVIEVGVNVPNATIMVIERAEIFGLAQLHQLRGRVGRGEGASTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL  L+ TEDGF IA+ DL+ R  G+++G  QSG+P+F IA  E    L+E+A+
Sbjct: 597 SEGGRRRLEALRETEDGFRIAQTDLEMRGAGDLIGTAQSGLPRFQIADLERQAGLMEVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP+L S RG++ R LL+L + ++A + I  G
Sbjct: 657 TDARALLATDPELKSERGRAARGLLWLMKQDQAIRLISVG 696


>gi|146340717|ref|YP_001205765.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Bradyrhizobium sp. ORS278]
 gi|146193523|emb|CAL77539.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Bradyrhizobium sp. ORS278]
          Length = 700

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 318/703 (45%), Positives = 448/703 (63%), Gaps = 6/703 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLFAP++T  GVG K    L  +++C  +   R +DLL + P+S IDR  RPK
Sbjct: 1   MRPAILNPLFAPVTTLSGVGPKQDKLLRYLLSC--SETPRLVDLLLHLPASVIDRRNRPK 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           + ++    +VT+   + +H   +   R PY +  +D TG++ L FF  K + ++ +   G
Sbjct: 59  VRDVEVGTVVTLEVTVDRHRPSR-NARAPYLVYASDDTGDVVLTFFRPKGDYIEKMLPVG 117

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            K  V+G ++       +VHP  I   +       I+ VY L  GL++   ++ I  AL+
Sbjct: 118 AKRYVSGTVQMYDGIPQIVHPDRILDEAGFAKLSGIDPVYPLTEGLALGSLRRAIAAALT 177

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           +LP LPEWI  ++L + +FPS+ EA   +H P++  D    +P   RLA+DELLAGQ+AL
Sbjct: 178 KLPELPEWISPEVLSRCNFPSLREALTRVHVPQELTDILPENPFWSRLAFDELLAGQLAL 237

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R Q ++  G     +G++ ++I+  +P++ T SQ  AI+ I  D+ +  RMLR+LQG
Sbjct: 238 ALVRAQLRRPAGNRHAGDGRLRRRIIDALPYALTNSQAQAIEAIAADLEKPVRMLRLLQG 297

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+A AA  EAG QA +MAP  ILA+QH + I    +   + V I+TG   
Sbjct: 298 DVGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHAKTIAPLAERAGMSVAILTGREK 357

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR  L R+  G+  ++IGTHAL QD + +  L L IVDEQHRFGV++RL LT K  A
Sbjct: 358 VKERRDILARLEAGEIDVLIGTHALIQDDVMFKSLALAIVDEQHRFGVRERLALTSKGEA 417

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+++ATPIPRTLVLT  GD+DIS++ EKPAGR+PI T  +   R  EVI+ +   L 
Sbjct: 418 VDVLVLSATPIPRTLVLTYFGDMDISELREKPAGRQPIDTRAVADTRRTEVIDAVGRALD 477

Query: 481 EGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            GK  YWICP +EE +     +  +  +R+ SL E F   + ++HG+M   +K+ VM+ F
Sbjct: 478 AGKLVYWICPLVEESEAEGIDHLTNATDRYESLRERFGERVGLVHGKMKGSEKDDVMNRF 537

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTV+EVG+DV  ASI++IENAE FGLAQLHQLRGR+GRG E S+CILLYH
Sbjct: 538 AAHELRLLVATTVVEVGVDVPAASIMVIENAERFGLAQLHQLRGRIGRGSEASTCILLYH 597

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PL + S  RL+V++ T DGF IAEEDLK R EG++LGI+QSG+P + IA+PE+H  L+ 
Sbjct: 598 EPLGQMSKARLAVIRETTDGFRIAEEDLKLRGEGDVLGIRQSGLPGYRIARPEVHAQLIT 657

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            AR +A  IL  DP L   R  ++R LLYLY+ +EA   + AG
Sbjct: 658 QARDEALRILKDDPKLKGPRSDALRCLLYLYERDEAIPLLTAG 700


>gi|91977091|ref|YP_569750.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
 gi|91683547|gb|ABE39849.1| ATP-dependent DNA helicase RecG [Rhodopseudomonas palustris BisB5]
          Length = 727

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 310/701 (44%), Positives = 441/701 (62%), Gaps = 3/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLFA ++T  GVG K       ++  G +   R +DLL + P S IDR  RPK
Sbjct: 29  MRPALLNPLFASITTLPGVGPKQDKLFRYLL--GRSETPRLVDLLLHLPVSVIDRRSRPK 86

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     +VT+  ++ +H      + R PY +  +D TG++ L FF  K + ++ +   
Sbjct: 87  IRDAEPGTVVTLEVHVDRHRPPPPGRSRAPYLVYASDDTGDVILTFFRAKADYIEKLLPI 146

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  ++G  +     + +VHP  +   +     P I+ VY L  GL++   ++   +AL
Sbjct: 147 GEKRYISGTGQLYDGTLQIVHPDRVVDEAGFAKLPKIDPVYPLTEGLAIGSLRRAEAQAL 206

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           ++LP +PEWI  ++L++  FPS+A+A N +H P +  D     P   RLAYDELLAGQ+A
Sbjct: 207 TKLPAMPEWISPEVLRRCRFPSLADALNRVHVPVEPTDILPDGPYWSRLAYDELLAGQLA 266

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G++  KI+  +P+S T SQ+ A   I +D+ Q  RMLR+LQ
Sbjct: 267 LALVRAQLRRPAGTRNAGDGRLRHKIIDALPYSLTASQQEAAAAIAEDLRQPVRMLRLLQ 326

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  EAG QA +MAP  ILA+QH + I    +   + V I+TG  
Sbjct: 327 GDVGSGKTVVALLAAAAVTEAGKQAALMAPTEILARQHIKTIAPLAERAGLSVAILTGRE 386

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR  L R+A G+   ++GTHAL QD + +  L L +VDEQHRFGV++RL LT K  
Sbjct: 387 KGKERRDLLARLAAGEIDFLVGTHALIQDDVVFKSLALAVVDEQHRFGVRERLALTSKGD 446

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL+++ATPIPRTLVLT  GD+D+S++ EKPAGR+PI T  +   R+ EVI+ +   +
Sbjct: 447 TVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRALSDGRLPEVIDAVGRAV 506

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + GK+ YWICP +EE +        +RF SL + F   + ++HGRM   DK+ VM  F +
Sbjct: 507 TAGKRVYWICPLVEESENVRLTDAEQRFESLQQRFGDKVGLVHGRMRGADKDRVMAQFAS 566

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+ATTV+EVG+DV  A+I++IENAE FGLAQLHQLRGRVGRG E S+C+LLY  P
Sbjct: 567 GEISVLVATTVVEVGVDVPAATIMVIENAERFGLAQLHQLRGRVGRGSEASTCLLLYREP 626

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + S  RL V++ T DGF IAEEDLK R EG++LG +QSG+P + IA+ ++H  L+  A
Sbjct: 627 LGEMSAARLRVIRETTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSDVHGQLITQA 686

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R +A  I+  +P L    G+++R LLYLY+ +EA   I AG
Sbjct: 687 RDEALRIMKDNPKLEGASGEALRCLLYLYERDEALPLIGAG 727


>gi|254510885|ref|ZP_05122952.1| DEAD/DEAH box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221534596|gb|EEE37584.1| DEAD/DEAH box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 696

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 294/700 (42%), Positives = 433/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +  L ++         R  D+LF  P + IDR  R  I
Sbjct: 4   RPEQLFPLFAGLETLDGVGPKTAQLLGQL----GIESPR--DVLFALPYAVIDRRRRDSI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                   +T+   I  H   +  K   Y+I + D   +  L+FF+ + + LK +  +G 
Sbjct: 58  QGADFPTTLTVEVTIGTHRPAR-NKGGAYRIHVEDSQTDFQLVFFHARGDYLKKLLPQGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++         P  E VY L  G++     K    AL+R
Sbjct: 117 RRVVSGKLELFDGMAQMVHPDHMVAPENAGELPEFEPVYHLTQGVTQKTAYKAAQSALAR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P L EW +   + ++ +P  A A    H+P+ A D    + ARERLAYDEL A Q+ L 
Sbjct: 177 VPELAEWADPAQVARQGWPGWASAMRAAHHPQGADDVAPFALARERLAYDELFAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R++ +K  GI     G +  ++L ++P+ PT +Q  A+++I  DM+ + RM R+LQGD
Sbjct: 237 LARQRERKARGIVSVGTGTLQSRVLASLPYRPTGAQARAVEEISADMASETRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH + ++   +   +++EI+TG    
Sbjct: 297 VGAGKTLVAFMALLIAVEAGGQGVMMAPTEILARQHLDGLRPLAEEAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A RR  L  +  G   I++GTHA+FQ+ +++  L L IVDEQHRFGV+QR++L++K    
Sbjct: 357 AERRAKLAALKQGDIQILVGTHAVFQEDVEFKALRLAIVDEQHRFGVRQRMELSEKGQRA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPI+T I+   R++EV+  L+  +  
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTAIVSTQRMEEVVTHLRNAIDA 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           GK+ YW+CP ++E + S+  +  ERF  L        + ++HG+M  +DK++ M +F+ G
Sbjct: 477 GKQCYWVCPLVDESEVSDLTAAEERFKRLRALLGDDVVGLVHGQMPPVDKDAAMAAFQAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG+++ +A+I++IE AE FGLAQLHQLRGRVGRGE+ S+C+L+Y PPL
Sbjct: 537 RTKVLVATTVIEVGVNIPNATIMVIERAEIFGLAQLHQLRGRVGRGEDASTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL VL+ TEDGF IAE DL+ R  G+++G  QSG+PKF IA  E    L+ +A+
Sbjct: 597 SEGGRKRLEVLRETEDGFRIAETDLQMRGAGDLIGTAQSGLPKFRIADLERQAGLMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L+ DP LTS RGQ+ R+LL+L + ++A + I  G
Sbjct: 657 SDARTLLSADPKLTSDRGQAARVLLWLMKQDQAIRLISVG 696


>gi|85702770|ref|ZP_01033874.1| ATP-dependent DNA helicase RecG [Roseovarius sp. 217]
 gi|85671698|gb|EAQ26555.1| ATP-dependent DNA helicase RecG [Roseovarius sp. 217]
          Length = 696

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 293/700 (41%), Positives = 429/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  G+G K +  L+ +        TR  DL+   P S +DR  R  +
Sbjct: 4   RPEILFPLFAGLETLEGIGPKTAQSLAAL------EITRPRDLILTLPHSAVDRRRRATV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                  IVT+   + QH +   +K  PY++++ D      L+FF+ + + L+ +   G 
Sbjct: 58  QGADLPGIVTVEVTVGQHRAPS-RKGGPYRVVVEDAATSFHLIFFHARDDYLRKMLPTGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK +       MVHP ++    +    P  E VY L  G++  +  K    AL R
Sbjct: 117 RRIVSGKAELFDGIAQMVHPDHMLPVEEAGEIPDFEPVYPLTAGVTQRVMAKGAHSALMR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+     +  +P   +A    H P +A+D     P RERLAYDEL+A Q+ L 
Sbjct: 177 LPELAEWIDPVQKAQAGWPDWVDAIRSAHAPDEARDLSPAHPTRERLAYDELMAHQMTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + ++  G      G +  K+L  +P++ T +Q  AI +I  DM+   RM R+LQGD
Sbjct: 237 LARSKLRRAKGRETIGTGTLQAKVLAALPYALTGAQTRAIAEIAADMAAPQRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA  A+  AVEAGGQ V+MAP  ILA+QH + ++   ++  +++EI+TG    
Sbjct: 297 VGAGKTLVAFKALLIAVEAGGQGVMMAPTEILARQHLQGLRPLAESAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A RR  L  +  G   I++GTHA+FQ  +++  L L IVDEQHRFGV+QRL+L +K    
Sbjct: 357 AERRAKLAALKRGDIQILVGTHAVFQKDVEFADLRLAIVDEQHRFGVRQRLELGKKGAQA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPIKT ++ + RIDEV++ L+  ++E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIKTALVSMGRIDEVVDHLRRAIAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-AIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +  +  S  ERF  L       I  ++HG+M   DK++ M +F+ G
Sbjct: 477 GRQAYWVCPLVEESEVVDLSSAEERFKRLRAALGEGIVGLVHGQMPPEDKDAAMAAFQRG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG+DV +ASI++IE AE FGLAQLHQLRGRVGRG+  S+C+L+Y  PL
Sbjct: 537 ETSVLVSTTVIEVGVDVPNASIMVIERAESFGLAQLHQLRGRVGRGQAASTCLLMYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL+ +++TEDGF I+E DL+ R  G+++G  QSG+P+F IA  E   +L+ +A+
Sbjct: 597 SEGGERRLTTMRDTEDGFRISEVDLEMRGAGDLIGTAQSGLPRFRIADLESQSALMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDL S RG++ R+LL+L + ++A + I  G
Sbjct: 657 SDARKLLHDDPDLVSDRGRAARVLLWLMEQDQAIRLISVG 696


>gi|255263174|ref|ZP_05342516.1| ATP-dependent DNA helicase RecG [Thalassiobium sp. R2A62]
 gi|255105509|gb|EET48183.1| ATP-dependent DNA helicase RecG [Thalassiobium sp. R2A62]
          Length = 696

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 292/700 (41%), Positives = 438/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L +  GVG K +L   ++    +    R  DLLF  P S IDR  R  +
Sbjct: 4   RPEILFPLFAELKSLEGVGPKTALNYQQM----HVETPR--DLLFTLPHSGIDRRVRDTV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +  +++VT+   I  H   + QK RPY++ ++D      L+FF+ + + ++ +  EG 
Sbjct: 58  DGVIGQQVVTVEVQIDGHQPPR-QKGRPYRVFVSDAQISFQLVFFHAREDYVRRMLPEGG 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++   N I MVHP+Y+   S+  + P  E VY L  G++     K    ALSR
Sbjct: 117 RRIVSGKVESFDNLIQMVHPNYMLPVSEAGDIPQFEPVYPLTAGVTQKGIYKAAQSALSR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P + EW++  LL ++ +P+   A   +H P+   D     PAR RLAYDEL+A Q+ L 
Sbjct: 177 VPQVDEWVDGALLAREGWPAWEAALVHVHAPQNNGDLSPEHPARLRLAYDELMAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + ++ +G      G++ ++++  +PF+PT +Q  +I +I  DM+Q  +M R+LQGD
Sbjct: 237 LARAKDRRAVGRASVGTGRLQKRVMDQLPFAPTGAQVRSIAEISDDMAQPTKMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA I +  AVEAGGQ V+MAP  ILA+QH E ++   +   +++EI+TG    
Sbjct: 297 VGAGKTLVAFIGLLVAVEAGGQGVMMAPTEILARQHLEGLQPLAEQAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R   L  +A G   I++GTHA+FQ  +++  L L I+DEQHRFGV+QRL+L  K    
Sbjct: 357 RERAAKLAALAAGDIQILVGTHAVFQKDVEFGDLRLAIIDEQHRFGVRQRLELGAKGPVT 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GR P++T ++  +R+D+VI RL+  ++E
Sbjct: 417 DVLVMTATPIPRSLELAQYGDMDVSVLDEKPPGRTPVQTALVATSRMDQVIARLQAAVAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +  +  +  ERF  L        + ++HG+M   DK++ M  F  G
Sbjct: 477 GRQAYWVCPLVEESEVVDMTAAEERFKRLRAVMGEGVVGLVHGQMPPADKDAAMAKFVAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+LLY  P+
Sbjct: 537 ETSVLVATTVIEVGVNVPNASIMVIERAESFGLAQLHQLRGRVGRGSAASTCLLLYQAPM 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL +++ TEDGF I+EEDL  R  G+++G  QSG+P+F +A  E    L+ +A+
Sbjct: 597 SETGKRRLEIMRETEDGFRISEEDLAIRGAGDVIGTAQSGLPQFRVADLERQLGLMAMAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP LTS RGQ+ R+LL+L + +++ + I  G
Sbjct: 657 SDARKLLHDDPTLTSPRGQAARVLLWLMEQDKSIRLISVG 696


>gi|307295468|ref|ZP_07575304.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306878507|gb|EFN09727.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 687

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 301/707 (42%), Positives = 441/707 (62%), Gaps = 27/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLF  +   +GVG   +  L ++         R +D+ F+ P SFIDR    +
Sbjct: 1   MRPDILNPLFTEIEALKGVGPALAKPLERL------GLARAVDVAFHLPVSFIDRRMVDE 54

Query: 61  ISEISEERIVTI----TGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKN 115
           +      R++ I    T Y +  S+     R P++++  D  G  + L++F R +   + 
Sbjct: 55  LILSDSGRVIGIQLTPTDYRASGSA-----RAPFRVIAQDRHGNSVALVYFGRNSAWPRK 109

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175
           +   G    V+GK++   + + +VHP Y+    +    P  E VY L  GL+ +  + ++
Sbjct: 110 LLPLGEPKFVSGKLEAYGDNLQIVHPDYVLPPEEAATIPAREPVYGLSEGLTNNRLRDLV 169

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH-NPRKAKDFEWTSPARERLAYDELL 234
            ++LSR  VLPEWIE  LL +K +P+  EA   IH +P  A+       ARERLAYDE+ 
Sbjct: 170 AQSLSRASVLPEWIEPSLLARKGWPAWREALTRIHADPSDAQ-------ARERLAYDEIF 222

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           AGQ+AL+L+R+  +K  GIPI  +G++  + +  +PF+PT +Q  A  +I  DM+Q   M
Sbjct: 223 AGQLALMLVRQSSRKRRGIPIAGDGRL--RAMLQLPFAPTGAQRRAFGEIEGDMAQPVPM 280

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           LR+LQGDVGSGKTLVAL+A+   VEAG Q  ++AP  ILA+QHYE ++K      + + I
Sbjct: 281 LRLLQGDVGSGKTLVALMALLNTVEAGAQGALLAPTEILARQHYETLRKMASGLPVTIAI 340

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG      R   L  +A G   I++GTHA+FQ++++Y  L L ++DEQHRFGV QR+ L
Sbjct: 341 LTGREKGKTRESTLMGLADGSIDILVGTHAIFQEAVRYKNLALAVIDEQHRFGVAQRMML 400

Query: 415 TQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           T KA  APH+L+MTATPIPRTL LT  G++D+S++ E P GR+PI+TV++  NR+DEV+E
Sbjct: 401 TSKAERAPHLLVMTATPIPRTLTLTYYGEMDVSRLDEMPPGRQPIQTVVMSANRLDEVVE 460

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L   +  G +AYW+CP +EE + S+  +   R   L   F   + ++HGRM   +K++ 
Sbjct: 461 ALARHVEGGGQAYWVCPLVEESETSDQAAAEARAEMLKMRFGPLVGLVHGRMKGPEKDAA 520

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M++F +   K+L+ATTVIEVG+DV ++++IIIE AE FGLAQLHQLRGRVGRG+  S CI
Sbjct: 521 MEAFASARTKILVATTVIEVGVDVPNSNLIIIEGAERFGLAQLHQLRGRVGRGQNHSVCI 580

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LL    LS+ S  RL++++ T DGF IAEEDL+ R  GEILG +QSG  +  +A PE   
Sbjct: 581 LLRGGALSETSRARLALMRETNDGFRIAEEDLRLRGAGEILGTRQSGEQQLKLATPEHLS 640

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +LL+ AR DA  ++ +D  LT  RG++ R  LYL++ + A   +R+G
Sbjct: 641 ALLDSARDDAHLLIDRDGGLTEARGEAARTCLYLFERDAAVGLLRSG 687


>gi|260576788|ref|ZP_05844773.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
 gi|259021040|gb|EEW24351.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
          Length = 695

 Score =  582 bits (1500), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 293/700 (41%), Positives = 424/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PL+A L T  GVG K +   + +         R  DLLF  P S IDR  +  +
Sbjct: 3   RPEQLFPLYADLETLDGVGPKTARAFAAL------GVERPKDLLFLLPHSGIDRSRKASV 56

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            ++     VT+   +  H   +  K RPY++++ D   E  L+FF+ + + L  +   G+
Sbjct: 57  RDVVPPCTVTVEVTVGGHFPPR-SKGRPYRVMVRDEAFEFQLVFFHARADYLTKLLPTGQ 115

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           K  V+G+++       MVHP ++    +    P  E VY L  GL+     K    AL+R
Sbjct: 116 KRLVSGRVEIFDGVAQMVHPDHVLRPEEAGELPPFEPVYPLTAGLTQKQVAKAAQSALAR 175

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P LPEWI+  L  ++ +P    A   +H PR A D   T+P R RLAYDEL A Q+ L 
Sbjct: 176 APQLPEWIDGPLKLREGWPDWHAAITAVHAPRTAADIALTAPYRLRLAYDELFAHQLTLS 235

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G+     G +  ++L ++P++ T +Q  A+ +I  DM+   RM R+LQGD
Sbjct: 236 LARASLRRGKGVASLGTGILQARVLASLPYAATAAQTRAVAEIAADMATPLRMNRLLQGD 295

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A+  AVE+GGQ V+MAP  ILA+QH E +    +   I + ++TG    
Sbjct: 296 VGSGKTLVAFLALLVAVESGGQGVMMAPTEILARQHLEILSPLAKAAGIHLALLTGRDKG 355

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           + R   L  +A G+  +++GTHA+FQ  + ++ L L +VDEQHRFGV QR++L  K TA 
Sbjct: 356 SDREAKLADLAAGRIDVLVGTHAVFQKDVHFHDLRLAVVDEQHRFGVAQRMELGAKGTAA 415

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L S GD+D+S + EKPAGRKP+KT +I   RIDEV+  L   ++E
Sbjct: 416 DVLVMTATPIPRSLALASYGDMDVSVLDEKPAGRKPVKTALITTARIDEVVAHLTRAVAE 475

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +E+ +  ++ S   RF  L        + ++HG+M   DK++ M SF  G
Sbjct: 476 GRQVYWVCPLVEDSELVDYASAEARFQQLRAALGEGVVGLVHGQMPPADKDAAMASFVAG 535

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+L+Y  PL
Sbjct: 536 KTAVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLMYQAPL 595

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL+ L++TEDGF IAEEDL  R  G+++G  QSG+PKF +A  E   +L+ +A+
Sbjct: 596 SEGGMRRLTTLRDTEDGFRIAEEDLAMRGAGDLIGTAQSGLPKFRVADLERQSALMAVAQ 655

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L +DP L S RG++ R+LL+L   + A + I  G
Sbjct: 656 SDARRLLAEDPGLQSPRGKAARLLLWLLDQDRAIKLISVG 695


>gi|209885335|ref|YP_002289192.1| ATP-dependent DNA helicase RecG [Oligotropha carboxidovorans OM5]
 gi|209873531|gb|ACI93327.1| ATP-dependent DNA helicase RecG [Oligotropha carboxidovorans OM5]
          Length = 704

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 306/706 (43%), Positives = 444/706 (62%), Gaps = 8/706 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFAP+++  GVG K       +++   +   R +DLL + PS+ IDR  +PK
Sbjct: 1   MRPPILNPLFAPITSLPGVGPKQDKLFRYLLD--RSETPRIVDLLLHLPSNVIDRRAQPK 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I + +   +VT+   + +H      + R PY I  +D TG + L +F  +   L  +   
Sbjct: 59  IRDATPGTVVTLKVTVDRHRPAPPGRSRAPYTIYASDETGTVMLTYFRPQGGYLDKLLPV 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V+G  +     + MVHP  +           I+ VY L  GL++   ++ + +AL
Sbjct: 119 GEVRYVSGTAQMFDGMLQMVHPERVVDEEGFAKLSGIDPVYPLTEGLAIGSMRRAMAQAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           ++LP LPEWI  +++++ SFP  A A + +H P +  D   + P   RLAYDELLA Q+A
Sbjct: 179 TKLPQLPEWIGPEVVRRCSFPGFATALHHLHQPDEITDILPSGPFWSRLAYDELLANQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G + +KI+  +P++ T SQ+ A++ I +D+ +  RMLR+LQ
Sbjct: 239 LALVRAQLRRPAGTRHAGDGHLRRKIIDALPYALTSSQQEAVRAIAEDLGKPLRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  E G Q+ +MAP  ILA+QH   I    +   + V I+TG  
Sbjct: 299 GDVGSGKTVVALLAAAAVAEEGRQSALMAPTEILARQHIATIAPLAERAGLRVAILTGRD 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR  LE++A+G+  +++GTHAL QD + +  L L IVDEQHRFGV++RL LT K  
Sbjct: 359 KGKDRRDILEQLANGEIDLLVGTHALIQDEVIFKSLALAIVDEQHRFGVRERLLLTDKGE 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  +L+++ATPIPRTLV+T  GD+DIS++ EKPAGR+PI T ++P++R+ E+IE L   L
Sbjct: 419 AVDMLVLSATPIPRTLVMTYFGDMDISELREKPAGRQPIDTRVVPVSRLGEIIEALGRAL 478

Query: 480 SEGKKAYWICPQIEEKK-----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             GK+ YWICP +EE       +       +RF SL + F   + ++HG+M   +K++ M
Sbjct: 479 KAGKRVYWICPLVEESDNGLGTDMGLIDATQRFESLQKTFGDVVGLVHGKMKPKEKDAAM 538

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G  +LL+ATTV+EVG+DV +A+I++IENAE FGL+QLHQLRGRVGRG E S+CIL
Sbjct: 539 ARFAAGETQLLVATTVVEVGVDVPEATIMVIENAERFGLSQLHQLRGRVGRGREASTCIL 598

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  P  + +  RL V++ T DGF IAEEDL+ R EG++LG +QSG+P F IA+PE+H S
Sbjct: 599 LYREPAGETATARLRVIRETTDGFRIAEEDLRLRGEGDVLGTRQSGLPGFRIARPEIHGS 658

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           L+  AR +A  IL  DP L   R +++R LLYL++ +EA   I AG
Sbjct: 659 LVAQARDEALRILQDDPKLAGERSEALRCLLYLFERDEAIPLIGAG 704


>gi|83942326|ref|ZP_00954787.1| ATP-dependent DNA helicase RecG [Sulfitobacter sp. EE-36]
 gi|83846419|gb|EAP84295.1| ATP-dependent DNA helicase RecG [Sulfitobacter sp. EE-36]
          Length = 696

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 297/700 (42%), Positives = 438/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +   +++         R  DLLF  P S IDR  +P +
Sbjct: 4   RPEALFPLFAKLETLEGVGPKTAQNFAQL----GVMAPR--DLLFTLPYSGIDRRLQPSV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            +      VT+   +  H +    K   Y+I + D      L+FF+ + +  K    EG 
Sbjct: 58  KDAILPATVTVAVTVGAHRA-PANKGGAYRIHVEDSATAFQLVFFHARGDYWKRQMPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+++       MVHP ++   ++  + P  E VY L +G++  L  K    ALSR
Sbjct: 117 RRVVSGRVELFDGIPQMVHPDFVVPEAEAGDIPTFEPVYPLTSGITQKLMYKATRAALSR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P + EWI+ +   ++++P   +A    H P    D    +PAR RLAYDELLA Q+ L 
Sbjct: 177 VPEVGEWIDPNQKNQENWPDFPDALQQAHAPNDMADLSAAAPARARLAYDELLAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + +++ G     +G + Q++L  +P++PT +Q  AI +I +DM+   RM R+LQGD
Sbjct: 237 LARAKDRRKAGRKTVGDGHLQQRVLGALPYAPTGAQTRAIAEIAKDMASGARMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E ++   +   +++E++TG    
Sbjct: 297 VGAGKTLVAFMALLRAVEAGGQGVLMAPTEILARQHLEGLRPLAEQAGVVLELLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR  L  +  G   I++GTHA+FQ  + +  L L +VDEQHRFGV+QRL+L +K  A 
Sbjct: 357 PERRAKLSALESGAIQILVGTHAVFQADVAFGDLRLAVVDEQHRFGVRQRLELGKKGQAV 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPI+T +I  +R++EV+ RL+  +SE
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTALIATDRMEEVVTRLRAAISE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE + S+  +   RF  L        + ++HG+M   DK++ M +F+ G
Sbjct: 477 GRQCYWVCPLVEESEVSDLIAAEARFKHLRAALGEGVVGLVHGQMPPADKDAAMRAFQQG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             KLL+ATTVIEVG+DV +ASII+IE AE FGLAQLHQLRGRVGRG+  S+C+L+Y  PL
Sbjct: 537 QTKLLVATTVIEVGVDVPNASIIVIERAESFGLAQLHQLRGRVGRGQAASTCLLMYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S++   RL VL+ +EDGF+IAE DLK R  G+++G  QSG+P+F +A  E   +L+++A+
Sbjct: 597 SESGRQRLEVLRESEDGFVIAETDLKMRGTGDLIGTAQSGVPRFRVADLEKQAALMQVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDLT+ RG++ R+LL+L + +EA + I  G
Sbjct: 657 SDARALLAVDPDLTTPRGKAARLLLWLMRQDEAIRLISVG 696


>gi|110679833|ref|YP_682840.1| ATP-dependent DNA helicase RecG [Roseobacter denitrificans OCh 114]
 gi|109455949|gb|ABG32154.1| ATP-dependent DNA helicase RecG, putative [Roseobacter
           denitrificans OCh 114]
          Length = 696

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 289/700 (41%), Positives = 434/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L  LF+ L T  GVG K +   + +      +  R  DLLF  P + +DR +R  I
Sbjct: 4   RPEALFGLFSSLETLDGVGPKTAANFAGL----GVHAPR--DLLFTLPINVLDRRHRNTI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +    I T+   I  H   +  K   Y+I + D      L+FF+ + + L  +  +G 
Sbjct: 58  EGLDCPTITTVAVTIGAHRPPR-TKGAAYRISVVDAEAAFQLVFFHARGDYLARILPQGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK+++      MVHP YI   ++    P  E VY L +G++  +  K    AL  
Sbjct: 117 RRVVSGKLERFDGVYQMVHPDYILSETEVDTIPPFEPVYPLTSGITQKVMFKATRAALKL 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+   ++K  +P + EAF + H P+  +D   T+ ARERLAYDE+ A Q+ L 
Sbjct: 177 LPDLTEWIDPGQIRKAGWPDVREAFTLAHRPQAPQDISITAAARERLAYDEMFAHQMTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   +++ G   +  G +  +++ ++P+  T +Q+ AI D+ +DM++  RM R+LQGD
Sbjct: 237 LARLTERQKKGRATHGTGDLQMRLIESLPYPLTGAQQRAIADVNRDMAEAVRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVE GGQ V+MAP  ILA+QH + +K   ++  + ++I+TG    
Sbjct: 297 VGAGKTLVAFLALLRAVEGGGQGVLMAPTEILARQHLQSLKPMAEHVGVRLDILTGRDTG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R   LE +A+G   +++GTHA+FQ  + +  L L ++DEQHRFGVQQR+ L QK  A 
Sbjct: 357 KERTAKLEDLANGNIGVLVGTHAVFQKGVTFSDLRLAVIDEQHRFGVQQRMALGQKGAAV 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GR PIKT ++ ++R++EV+ RL  V+  
Sbjct: 417 DVLVMTATPIPRSLALAQFGDMDVSVLDEKPPGRMPIKTALVSVDRMEEVVSRLCAVVEG 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE +  +  +  +RF  L        + ++HG+M   +K++ M  F++G
Sbjct: 477 GRQCYWVCPLVEESEVVDLTAAEDRFKKLRAALGEGVVGLVHGQMPAAEKDAAMAGFESG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +A+I++IE AE FGLAQLHQLRGRVGRG   S+C+LLY PPL
Sbjct: 537 QTKVLVATTVIEVGVNVPNATIMVIERAEFFGLAQLHQLRGRVGRGTAASTCLLLYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S++   RL VL+ TEDGF+IAE DLK R  G+++G  QSG+P+F IA  E    L++IA+
Sbjct: 597 SESGQRRLEVLRETEDGFMIAETDLKMRGAGDVIGTAQSGLPRFWIADLERQAGLMQIAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L + RGQ+ R+LL+L + +E+ + I  G
Sbjct: 657 SDARKLLADDPGLATPRGQAARMLLWLLRKDESIRLITVG 696


>gi|294011407|ref|YP_003544867.1| ATP-dependent DNA helicase RecG [Sphingobium japonicum UT26S]
 gi|292674737|dbj|BAI96255.1| ATP-dependent DNA helicase RecG [Sphingobium japonicum UT26S]
          Length = 691

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 293/703 (41%), Positives = 438/703 (62%), Gaps = 19/703 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLF  +   +GVG   +  L ++         R +D+ F+ P SF+DR    +
Sbjct: 5   MRPDILNPLFTEIEALKGVGPTLAKPLERL------GLARAVDVAFHLPVSFVDRRMVDE 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFE 119
           +      R++ IT   + + +     R P++++  D  G  + L++F R +   + +   
Sbjct: 59  LMLGDSGRVIGITLTPTDYRASG-SARAPFRVIAQDRHGNSVALVYFGRNSAWPRKLLPL 117

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V+GK++   + + +VHP ++    +    P  E VY L  GL+ +  + ++ +AL
Sbjct: 118 GEPKFVSGKLEAYGDNLQIVHPDHVLPPEEAATIPAREPVYGLSEGLTNNRLRDLVAQAL 177

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH-NPRKAKDFEWTSPARERLAYDELLAGQI 238
           +R P LPEWIE  LL +K +P   EA   IH +P  A        ARERLAYDE+ AGQ+
Sbjct: 178 ARAPELPEWIEPSLLARKGWPGWREALQRIHADPADAL-------ARERLAYDEIFAGQL 230

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL+L+R+  ++  G+P+  +G++  + +  +PF+PT +Q  A  +I  DM+Q   MLR+L
Sbjct: 231 ALMLVRQSSRRRRGVPVAGDGRL--RAMLKLPFAPTGAQSRAFMEIEGDMAQPVPMLRLL 288

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVAL+A+   VEAG Q  ++AP  ILA+QHYE ++      ++ + I+TG 
Sbjct: 289 QGDVGSGKTLVALMALLNTVEAGAQGALLAPTEILARQHYETLRGMASGLRVNIAILTGR 348

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L  +A G   I++GTHA+FQD+++Y  L L ++DEQHRFGV QR+ L  KA
Sbjct: 349 EKGKARESTLMGLADGSIDILVGTHAIFQDAVRYKNLALAVIDEQHRFGVAQRMMLAAKA 408

Query: 419 T-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             APH+L+MTATPIPRTL LT  G++D+S++ E P GR+PI+TV++   R+DEV+E L  
Sbjct: 409 ERAPHLLVMTATPIPRTLTLTYYGEMDVSRLDEMPPGRQPIQTVVMSSGRLDEVVEALAR 468

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            +  G +AYW+CP +EE + S+  +   R  +L   F   +AI+HGRM   +K++ M+SF
Sbjct: 469 HVEGGGQAYWVCPLVEESENSDLAAAEARAETLRTRFGERVAIVHGRMKGPEKDAAMESF 528

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +   K+L+ATTVIEVG+DV ++++IIIE A+ FGLAQLHQLRGRVGRG+  S CILL  
Sbjct: 529 ASARAKILVATTVIEVGVDVPNSNLIIIEGADRFGLAQLHQLRGRVGRGQNQSVCILLRG 588

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             LS+ +  RL++++ T DGF IAEEDL+ R  GEILG +QSG  +  +A PE   +LL+
Sbjct: 589 NALSETARARLALMRETNDGFRIAEEDLRLRGAGEILGTRQSGEQQLKLATPEHLSALLD 648

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             R DA  ++ +D  L+  RGQ+ RI LYL++ + A   +R+G
Sbjct: 649 PVRDDAHLLIDRDGGLSEARGQAARICLYLFERDAAVGLLRSG 691


>gi|299133934|ref|ZP_07027128.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
 gi|298591770|gb|EFI51971.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
          Length = 702

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 306/704 (43%), Positives = 444/704 (63%), Gaps = 6/704 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLFAP+++  GVG K       +++   +   R +DLL + PS+ IDR  +P 
Sbjct: 1   MRPNVLNPLFAPVTSLAGVGPKQDKLFRYLLD--RSETPRIVDLLLHLPSNVIDRRAQPD 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     +VT+   I +H +    + R PY +  +D TG + L +F  +   L  +   
Sbjct: 59  IRDAVPGTVVTLKVTIDRHRAPPPGRSRAPYTVFASDDTGTVMLTYFRPQGGYLDKLLPI 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V+G ++     + MVHP  +           I+ VY L  GL++   ++ + +AL
Sbjct: 119 GEVRYVSGTVQMFDGTLQMVHPDRVVDEEGFAKLSGIDPVYPLTEGLAIGSVRRAVAQAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           ++LP LPEWI  +++++ SFP  + A + IH P +  D     P   RLA+DELLA Q+A
Sbjct: 179 TKLPQLPEWISPEVVRRCSFPDFSAALHRIHQPEEITDILPDGPFWSRLAFDELLANQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G +  KI+  +PF+ T SQ+ A + I +D+ +  RMLR+LQ
Sbjct: 239 LALVRAQLRRAAGTRHAGDGHLRAKIIDALPFALTPSQQDAARAIAEDLGKPLRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA VE G Q+ +MAP  ILA+QH   I    +   + V I+TG  
Sbjct: 299 GDVGSGKTVVALLAAAAVVEEGRQSALMAPTEILARQHIATIAPLAERAGLRVAILTGRD 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR  LER+A+G+  +++GTHAL QD + +  L L IVDEQHRFGV++RL LT K  
Sbjct: 359 KGKERRDILERLANGEIDLLVGTHALIQDEVIFKSLALAIVDEQHRFGVRERLLLTGKGE 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  +L+++ATPIPRTLV+T  GD+DIS++ EKPAGR+PI T ++P +R+ E+I+ L   L
Sbjct: 419 AVDMLVLSATPIPRTLVMTYFGDMDISELREKPAGRQPIDTRVVPNSRLGEIIDALGRAL 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVE---RFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             GK+ YWICP +EE        +V+   RF SL + F   + ++HG+M   DK++ M  
Sbjct: 479 DAGKRIYWICPLVEESDAETALPLVDATQRFESLQKKFGGVVGLVHGQMKPKDKDAAMAR 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G  +LL+ATTV+EVG+DV +A+I++IENAE FGL+QLHQLRGR+GRG E S+CILLY
Sbjct: 539 FASGETQLLVATTVVEVGVDVPEATIMVIENAERFGLSQLHQLRGRIGRGHEASTCILLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H P  + +  RL V++ T DGF IAEEDL+ R EG++LG +QSG+P F IA+PE+H  L+
Sbjct: 599 HEPAGEIATARLRVIRETTDGFRIAEEDLRLRGEGDVLGTRQSGLPGFRIARPEIHGGLV 658

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             AR +A  I+  D  L   RG+++R LLYL++ +EA   I AG
Sbjct: 659 AQARDEALRIMQDDAKLDGERGEALRCLLYLFERDEAIPLIGAG 702


>gi|83953545|ref|ZP_00962266.1| ATP-dependent DNA helicase RecG [Sulfitobacter sp. NAS-14.1]
 gi|83841490|gb|EAP80659.1| ATP-dependent DNA helicase RecG [Sulfitobacter sp. NAS-14.1]
          Length = 696

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 295/700 (42%), Positives = 437/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +   +++         R  DLLF  P S IDR  +P +
Sbjct: 4   RPEALFPLFAKLETLEGVGPKTAQNFAQL----GVMAPR--DLLFTLPYSGIDRRLQPSV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            +      VT+   +  H +    K   Y+I + D      L+FF+ + +  K    EG 
Sbjct: 58  KDAILPATVTVAVTVGAHRA-PANKGGAYRIHVEDSATAFQLVFFHARGDYWKRQMPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+++       MVHP ++   ++  + P  E VY L +G++  L  K    ALSR
Sbjct: 117 RRVVSGRVELFDGIPQMVHPDFVVPEAEAGDIPTFEPVYPLTSGITQKLMYKATRAALSR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P + EWI+ +   ++++P   +A +  H P    D    +PAR RLAYDELLA Q+ L 
Sbjct: 177 VPEVGEWIDPNQKNQENWPDFPDALHQAHAPNDMADLSAAAPARARLAYDELLAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + +++ G     +G + Q++L  +P++PT +Q  AI +I +DM+   RM R+LQGD
Sbjct: 237 LARAKDRRKAGRKTLGDGHLQQRVLGALPYAPTGAQTRAIAEIAKDMASGARMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E ++   +   ++++++TG    
Sbjct: 297 VGAGKTLVAFMALLRAVEAGGQGVLMAPTEILARQHLEGLRPLAEQAGVVLDLLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR  L  +  G   I++GTHA+FQ  + +  L L +VDEQHRFGV+QRL+L +K  A 
Sbjct: 357 PERRAKLSALESGAIQILVGTHAVFQADVAFGDLRLAVVDEQHRFGVRQRLELGKKGQAV 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPI+T +I  +R++EV+ RL+  +SE
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTALIATDRMEEVVTRLRAAISE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE + S+  +   RF  L        + ++HG+M   DK++ M +F+ G
Sbjct: 477 GRQCYWVCPLVEESEVSDLIAAEARFKHLRAALGEGVVGLVHGQMPPADKDAAMRAFQQG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             KLL+ATTVIEVG+DV +ASII+IE AE FGLAQLHQLRGRVGRG+  S+C+L+Y  PL
Sbjct: 537 QTKLLVATTVIEVGVDVPNASIIVIERAESFGLAQLHQLRGRVGRGQAASTCLLMYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S++   RL VL+ +EDGF+IAE DLK R  G+++G  QSG+P+F +A  E    L+++A+
Sbjct: 597 SESGRQRLEVLRESEDGFVIAETDLKMRGTGDLIGTAQSGVPRFRVADLEKQAGLMQVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDL + RG++ R+LL+L + +EA + I  G
Sbjct: 657 SDARALLAVDPDLATPRGKAARLLLWLMRQDEAIRLISVG 696


>gi|259416724|ref|ZP_05740644.1| ATP-dependent DNA helicase RecG [Silicibacter sp. TrichCH4B]
 gi|259348163|gb|EEW59940.1| ATP-dependent DNA helicase RecG [Silicibacter sp. TrichCH4B]
          Length = 696

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 296/700 (42%), Positives = 427/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T +GVG K +   +++        T   DLLF  P S +DR  R  I
Sbjct: 4   RPEQLFPLFAELETLQGVGPKIAEHFAQL------QITAPRDLLFSLPYSLVDRRRRETI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +      T+   + +H   +  K   Y+I + D   E  L+FF+ ++  L     EG 
Sbjct: 58  RGLELPTTATVEITVGRHRPAR-NKGGAYRIDVTDQETEFQLVFFHGRSRYLTAQLPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++    +  + P  E VY L  G++     K +  AL R
Sbjct: 117 RRVVSGKLELFDGMAQMVHPDHMLPLEEAGDIPDFEPVYHLTHGITQKTMFKAVQSALQR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P L EW++     K+ +    EA    H P    D E  +PAR RLAYDEL A Q+ L 
Sbjct: 177 VPELTEWMDASYKTKRGWADWHEAIATAHAPGHLSDLEPEAPARARLAYDELFAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           + R   +++ G      GK+  K+L  +P+ PT +Q  AI++I  DM+   RM R+LQGD
Sbjct: 237 IARSVEREQPGRSSVATGKLQNKVLSALPYKPTGAQGRAIEEITADMASGRRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E +K    +  +++EI+TG    
Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTEILARQHLEGLKPLADDAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR   E +  G  HI++GTHA+FQ  + +  L LVIVDEQHRFGV+QR++L +K    
Sbjct: 357 KDRRAKTEALQRGDIHILVGTHAVFQQDVVFDDLRLVIVDEQHRFGVRQRMELAEKGKRS 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L LT  GD+++S + EKP GRKPIKT I+   R+ EV++ L+  ++E
Sbjct: 417 DVLVMTATPIPRSLALTQYGDMEVSILDEKPPGRKPIKTAILSTERMSEVVDHLRRAIAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE +  +  +  ERF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVEESEVMDLTAADERFKHLRAVLGDDVVGLVHGQMPPAEKDAAMAAFQEG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+L+Y PPL
Sbjct: 537 RTRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGTAQSTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    RL VL+ +EDGF+IAE DL+ R  G+++G  QSG+P+F IA  E    L+ IA+
Sbjct: 597 TEGGRRRLEVLRESEDGFVIAETDLQMRGAGDVIGTAQSGLPRFRIADLERQADLMAIAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ ++T DPDLTS RG++ R LL+L + +EA + I  G
Sbjct: 657 SDARALMTSDPDLTSDRGRAARTLLWLLRQDEAIRLISVG 696


>gi|170744355|ref|YP_001773010.1| ATP-dependent DNA helicase RecG [Methylobacterium sp. 4-46]
 gi|168198629|gb|ACA20576.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 704

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 295/703 (41%), Positives = 439/703 (62%), Gaps = 4/703 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           +RPS L+PLFAP +   G G K +  L +++     +  R +DLLF+ P   + R  +  
Sbjct: 3   LRPSLLDPLFAPATVLLGAGPKMAALLDRLLGTPE-HPARVVDLLFHLPHGGVARQLKGS 61

Query: 61  ISEISEERIVTITGYISQHSSFQ-LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+E      VT+   +  H   Q +  RRPY++L+ DG+G+I+L+FF      ++ +   
Sbjct: 62  IAEAPTGEPVTLCVTVVAHRPPQTVGARRPYRVLVEDGSGDISLVFFNMPRARIEKMLPV 121

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  V+G+I+       MVHP  I  +    + P +E +Y    GL+     K+   A+
Sbjct: 122 GARRYVSGRIELWDGFRQMVHPARILDDKGFSDLPAVEPLYGATEGLTSRAIGKLAQGAV 181

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP--RKAKDFEWTSPARERLAYDELLAGQ 237
            RLP LPEW +   L ++ +P  A+A    H P      + E     R RLAYDELLA Q
Sbjct: 182 ERLPDLPEWQDPAWLARQRWPGFAQALRAEHRPDAPPPAEGEPPPATRRRLAYDELLASQ 241

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+R + ++  G     +G ++++I   +PF  T +Q  A+ +I  DM    RMLR+
Sbjct: 242 LALALVRSRMRRPPGRINAGDGDLSRRIEAALPFRLTGAQIRALAEIRGDMRSDRRMLRL 301

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT VA++AMA+A+EAG QA +MAP  ILA+QH E ++   ++  + + ++TG
Sbjct: 302 LQGDVGSGKTAVAMLAMASAIEAGRQAAMMAPTEILARQHAERLRPLAESAGLSLVLMTG 361

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               A RR  L+ +A G   I +GTHALFQ+ + +  L L +VDEQHRFGV QRL L  K
Sbjct: 362 RDRTAERRATLKGLAEGSIAIAVGTHALFQEEVAFRDLGLAVVDEQHRFGVHQRLALGAK 421

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             A  +L+MTATPIPR+L LT  GD+++S + EKPAGR+PI T ++   RIDEV+  L+ 
Sbjct: 422 GEAVDILVMTATPIPRSLALTYFGDMEVSVLDEKPAGRQPIATRLVSTERIDEVVAGLER 481

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            L+ G++ YWICP + E +  +  +  ER   L +HF +++ ++HG+M   DK+  M  F
Sbjct: 482 ALARGERVYWICPLVAESEVIDLAAAEERCADLRQHFGAAVGLVHGKMPGRDKDEAMARF 541

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G  ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG   S+C+LLY 
Sbjct: 542 ASGETRILVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGAAASTCLLLYR 601

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PL + +  RL +++ TEDGF IAEEDL+ R EGE+LG +QSG+  F +A+PE+   LL 
Sbjct: 602 GPLGQVARARLEMMRETEDGFRIAEEDLRLRGEGEVLGTRQSGLAAFRLARPEVDGDLLL 661

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            AR DA+ I+ +DP L   RG+++R+LL L++ + A + + AG
Sbjct: 662 AARDDARLIVERDPGLAGERGRALRVLLSLFERDAAVRLLGAG 704


>gi|39935728|ref|NP_948004.1| ATP-dependent DNA helicase [Rhodopseudomonas palustris CGA009]
 gi|39649581|emb|CAE28103.1| ATP-dependent DNA helicase [Rhodopseudomonas palustris CGA009]
          Length = 700

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 311/702 (44%), Positives = 444/702 (63%), Gaps = 4/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLFAP+++  GVG K       +++    +  R  DLL + P+S IDR  RPK
Sbjct: 1   MRPALLNPLFAPVTSLTGVGPKQDKLFRYLLD--RDDTPRLADLLLHLPTSVIDRRARPK 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     +VT+   + +H +    + R PY +  +D TG++ L FF  K + ++ +   
Sbjct: 59  IRDAVPGTVVTLEVTVDRHRAPPPGRSRAPYLVHASDDTGDVVLTFFRAKPDFVQKLLPV 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  ++G  +     + +VHP  +         P I++VY L  GL++   ++ + +AL
Sbjct: 119 GAKRYISGTGQLYDGTLQIVHPDRVVDEEGFAKLPQIDSVYPLTEGLAIGSLRRAVAQAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           ++LP LPEWI  ++L++  FPS A+A   +H P +  D     P   RLAYDELLAGQ+A
Sbjct: 179 TKLPALPEWISPEVLRRCRFPSFADALKHVHIPDQPTDILPDGPYWSRLAYDELLAGQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G++  KI+  +P++ T SQ+ A   I +D+ Q  RMLR+LQ
Sbjct: 239 LALVRAQLRRPAGSRNAGDGRLRHKIIDALPYALTNSQQQAAAAIAEDLRQPVRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  EAG QA +MAP  ILA+QH + I    +   + V I+TG  
Sbjct: 299 GDVGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHIKTIAPLAERAGMQVAILTGRE 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+ LER+A G+   ++GTHAL QD + Y  L L +VDEQHRFGV++RL LT K  
Sbjct: 359 KGKERREILERLAAGEIDFLVGTHALIQDDVIYKSLALAVVDEQHRFGVRERLALTSKGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL+++ATPIPRTLVLT  GD+D+S++ EKPAGR+PI T  +   R+ EVI+ +   +
Sbjct: 419 DVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRTLSDTRLPEVIDGIGRAI 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           + GK+ YWICP +EE +        +RF SL + F    + ++HGRM   DK+ VM  F 
Sbjct: 479 AAGKRVYWICPLVEESENVKLTDAEQRFESLRQRFGDHQVGLVHGRMRGSDKDLVMGQFA 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTV+EVG+DV +ASI++IENAE FGLAQLHQLRGR+GRG E S+C+LLY  
Sbjct: 539 RGEISVLVATTVVEVGVDVPEASIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYRE 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + S  RL V+++T DGF IAEEDLK R EG++LG +QSG+P + IA+ E+H  L+  
Sbjct: 599 PLGELSGARLRVIRDTTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSEVHAQLITQ 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR +A  IL  +P L    G+++R LLYLY+ +EA   + AG
Sbjct: 659 ARDEALRILKDNPKLEGPSGEALRCLLYLYERDEAIPLLGAG 700


>gi|260426067|ref|ZP_05780046.1| ATP-dependent DNA helicase RecG [Citreicella sp. SE45]
 gi|260420559|gb|EEX13810.1| ATP-dependent DNA helicase RecG [Citreicella sp. SE45]
          Length = 696

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 293/700 (41%), Positives = 427/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +  L  +      +     DLLF  P   IDR  R  +
Sbjct: 4   RPEPLWPLFAELKTLDGVGPKTAQALEGL------DVVAPRDLLFTLPHGVIDRRPRETV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                  +VT+   + +H     QK RPY+I + D      L+FF+ + + L  +  EG 
Sbjct: 58  LGADLPGVVTVEVTVGRHMK-PAQKGRPYRIHVEDARSGFQLVFFHGREDYLSRILPEGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+++       MVHP ++    +    P  E VY L  G++  L  +   +AL+ 
Sbjct: 117 RRLVSGRVELFDGMAQMVHPDHVLPVDEAATLPAFEPVYPLTAGVTQKLMTRATADALTM 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P L EWI+  L  ++ +P   +A    H P  + D   T+PAR RLAYDEL+A Q+ L 
Sbjct: 177 APELGEWIDGPLKAREGWPDWRDALVRAHAPEGSGDLAPTAPARARLAYDELMAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   +K  G      G + +K+L  +PF PT +Q  A+ +I  DM+   RM R+LQGD
Sbjct: 237 LARVHRRKGKGRETIGSGALRRKVLAALPFRPTGAQMRAMDEIAGDMAAPERMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH + +K   +   ++VE++TG    
Sbjct: 297 VGAGKTLVAFMALLIAVEAGGQGVMMAPTEILARQHLDGLKPLAEAAGVVVELLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           + R+  L  +A G  H+++GTHA+FQ  +++  L L IVDEQHRFGV+QRL+L +K  A 
Sbjct: 357 SERKAKLAALARGDIHVLVGTHAVFQADVEFADLRLAIVDEQHRFGVRQRLELGRKGAAA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPI+T ++   R+ EV+E L+  + E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTALVSAERMAEVVEHLRGAVGE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +  +  +  ERF  L      + + ++HG+M   +K++ M  F  G
Sbjct: 477 GRQAYWVCPLVEESEAVDLTAAEERFKRLRAALGEAVVGLVHGQMPPAEKDTAMARFVAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +ASI++IE AE+FGLAQLHQLRGRVGRGE  S+C+L+Y  PL
Sbjct: 537 ETKVLVATTVIEVGVNVPNASIMVIERAEYFGLAQLHQLRGRVGRGEAESTCLLMYQGPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            +    RL+ L+ TEDGF I+E DL+ R  G+++G  QSG+P+F +A  E    L+ +A+
Sbjct: 597 GEAGMRRLTTLRETEDGFRISEVDLEMRGAGDLIGTAQSGLPRFRVADLEHQAGLMAMAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L +DP L S RG++ R+LL+L + +EA + I  G
Sbjct: 657 TDARKLLAEDPGLESERGRAARMLLWLMRQDEAIRLISVG 696


>gi|192291314|ref|YP_001991919.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192285063|gb|ACF01444.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 700

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 311/702 (44%), Positives = 442/702 (62%), Gaps = 4/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLFAP+++  GVG K       +++    +  R  DLL + P+S IDR  RPK
Sbjct: 1   MRPALLNPLFAPVTSLTGVGPKQDKLFRYLLD--RDDTPRLADLLLHLPTSVIDRRARPK 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     +VT+   + +H +    + R PY +  +D TG++ L FF  K + ++ +   
Sbjct: 59  IRDAVPGTVVTLEVTVDRHRAPPPGRSRAPYLVYASDDTGDVVLTFFRAKPDFVQKLLPV 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  ++G  +     + +VHP  +         P I+ VY L  GL++   ++ + +AL
Sbjct: 119 GAKRYISGTGQLYDGTLQIVHPDRVVDEEGFAKLPQIDPVYPLTEGLAIGSLRRAVAQAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           ++LP LPEWI  ++L++  FPS A+A   +H P +  D     P   RLAYDELLAGQ+A
Sbjct: 179 TKLPALPEWISPEVLRRCRFPSFADALKHVHIPDQPTDILPDGPYWSRLAYDELLAGQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G++  KI+  +P++ T SQ+ A   I +D+ Q  RMLR+LQ
Sbjct: 239 LALVRAQLRRPAGSRNAGDGRLRHKIIDALPYALTNSQQQAAAAIAEDLRQPVRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  EAG QA +MAP  ILA+QH + I        + V I+TG  
Sbjct: 299 GDVGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHIKTIAPLADRAGMQVAILTGRE 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+ LER+A G+   ++GTHAL QD + Y  L L +VDEQHRFGV++RL LT K  
Sbjct: 359 KGKERREILERLAAGEIDFLVGTHALIQDDVIYKSLALAVVDEQHRFGVRERLALTSKGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL+++ATPIPRTLVLT  GD+D+S++ EKPAGR+PI T  +   R+ EVI+ +   +
Sbjct: 419 DVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRTLSDTRLPEVIDGIGRAI 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           + GK+ YWICP +EE +        +RF SL + F    + ++HGRM   DK+ VM  F 
Sbjct: 479 ATGKRVYWICPLVEESENVKLTDAEQRFESLRQRFGDHQVGLVHGRMRGSDKDLVMGQFA 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTV+EVG+DV +ASI++IENAE FGLAQLHQLRGR+GRG E S+C+LLY  
Sbjct: 539 RGEISVLVATTVVEVGVDVPEASIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYRE 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + S  RL V+++T DGF IAEEDLK R EG++LG +QSG+P + IA+ E+H  L+  
Sbjct: 599 PLGELSGARLRVIRDTTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSEVHAQLITQ 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR +A  IL  +P L    G+++R LLYLY+ +EA   + AG
Sbjct: 659 ARDEALRILKDNPKLEGPSGEALRCLLYLYERDEAIPLLGAG 700


>gi|126736447|ref|ZP_01752188.1| ATP-dependent DNA helicase RecG [Roseobacter sp. CCS2]
 gi|126713985|gb|EBA10855.1| ATP-dependent DNA helicase RecG [Roseobacter sp. CCS2]
          Length = 696

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 283/700 (40%), Positives = 429/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLF  ++   G+G K +  L  +         + +D+L   P S +DRH R  I
Sbjct: 4   RPETLFPLFGAVTKLDGIGPKSAQTLDGV------GVVKPLDILMTLPLSGVDRHRRASI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            E+    + T+   +  H      +  PY++ + D      L+FF+ + + L+ +   G+
Sbjct: 58  REVVAPSVATVEVTVGDHYPPS-TRGHPYRVHVEDAETSFQLVFFHARGDYLQKLLPTGQ 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       +VHP ++   ++  + P  E VY L  G++     K    AL  
Sbjct: 117 RRVVSGKVEIFDGIAQIVHPDHVLPVAEAEDIPAFEPVYPLHAGITQKAMWKATRSALGL 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P LPEWI+  L  ++ +P  A+A +  H P+   D    SPAR RLAYDELLA Q+ L 
Sbjct: 177 MPKLPEWIDPALKAREDWPDWADAMHKAHGPQATSDLSPHSPARARLAYDELLAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   +K  GI     G ++ ++L ++P+ PT +Q+ A  +I  D++   RM R+LQGD
Sbjct: 237 LARAATRKAKGIASQATGDLSGRVLASLPYKPTGAQQRAFAEIAADLATPLRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVAL+A+   VEAGGQ V+MAP  ILA+QH + ++   ++  +++EI+TG    
Sbjct: 297 VGSGKTLVALMALLDVVEAGGQGVMMAPTEILARQHLDGLRPLAESAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           + R   L+ +A G+ +I++GTHA+FQ  I +  L L I+DEQHRFGV QR++L  K  A 
Sbjct: 357 SGRAAKLKALADGEINILVGTHAVFQKDIVFKDLRLAIIDEQHRFGVSQRMELGAKGQAV 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GR P++T ++   R+DEVIE+L+  ++E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRTPVQTALVSAARMDEVIEKLRHAVAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +  +  +  ERF  L        + ++HG+M   +K++ M  F  G
Sbjct: 477 GRQAYWVCPLVEESEIVDMTAAEERFKRLRATLGEGVVGLVHGQMPPAEKDAAMARFVAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +ASI++IE+A+ FGLAQLHQLRGRVGRG   SSC+L+Y PPL
Sbjct: 537 ETKVLVATTVIEVGVNVPNASIMMIEHADRFGLAQLHQLRGRVGRGSAASSCLLIYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            ++   RL +L+ TEDGF I+EEDL  R  G+++G  QSG+P+F IA  E     + +A+
Sbjct: 597 GESGRRRLEILRETEDGFRISEEDLAMRGAGDVIGTAQSGIPRFRIADLERQAGQMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L + RG++ R LL+L + ++A + I  G
Sbjct: 657 SDARALLNADPKLETARGKAARTLLWLMEQDKAIRLISVG 696


>gi|94495557|ref|ZP_01302137.1| DNA helicase [Sphingomonas sp. SKA58]
 gi|94424945|gb|EAT09966.1| DNA helicase [Sphingomonas sp. SKA58]
          Length = 687

 Score =  575 bits (1482), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 293/707 (41%), Positives = 442/707 (62%), Gaps = 27/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA +S F+GVG   +  L ++      +  R +D+ F+ P  ++DRH   +
Sbjct: 1   MRPDILNPLFAEISLFKGVGPALARPLERL------DLKRAVDVAFHLPVGWVDRHLTDR 54

Query: 61  ISEISEERIV----TITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKN 115
           +      RI+    T   Y +  S+     R P+++L  DG G  + L++F + +   + 
Sbjct: 55  LDMADAGRIIGTLLTPVDYRAGGSA-----RAPFRVLAADGQGNGVALVYFGKNSGWPRK 109

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175
           +        V+GK++     + +VHP ++    +    P  E+VY L  GL+ +  + + 
Sbjct: 110 LLPLNEPKFVSGKLEAYGENLQIVHPDHVLPPEEADTVPARESVYGLSEGLTNNRMRDLA 169

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH-NPRKAKDFEWTSPARERLAYDELL 234
            +AL+R P LPEWIE  LL +K +P+  EA    H +P          PARERLAYDE+ 
Sbjct: 170 AQALARAPDLPEWIEPSLLARKGWPAWREALARAHADP-------GDGPARERLAYDEIF 222

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           AGQ+AL+L+R+  ++  G+ I  +G++  + +  +PF+PT +Q  AI +I  DM+Q   M
Sbjct: 223 AGQLALMLVRQSSRRRRGVSIQGDGRL--RAMLKLPFAPTGAQRRAIGEIEGDMAQATPM 280

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           LR+LQGDVGSGKTLVAL+A+  AVEAG Q  ++AP  ILA+QH++ ++K T    I + I
Sbjct: 281 LRLLQGDVGSGKTLVALMALLNAVEAGMQGAMLAPTEILARQHHDTLRKMTSGLPIEIAI 340

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG      R   L  +A G   I++GTHA+FQ++++Y  L L ++DEQHRFGV QR+ L
Sbjct: 341 LTGREKGKVREATLMGLADGSIDILVGTHAIFQEAVRYKALGLAVIDEQHRFGVAQRMML 400

Query: 415 TQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             KA  APH+L+MTATPIPRTL LT  G++D+S++ E P GR+PI+T+++  +R+DEV++
Sbjct: 401 ANKAERAPHLLVMTATPIPRTLTLTYYGEMDVSRLDEMPPGRQPIQTLVMAASRLDEVVD 460

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L   +  G +AYW+CP +EE + S+  +   R  SL   F   + ++HGRM   +K++ 
Sbjct: 461 ALARHVDGGGQAYWVCPLVEESETSDQAAAEARAESLRLRFGDRVGLVHGRMKGPEKDAA 520

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M++F     ++L+ATTVIEVG+DV ++S+IIIE A+ FGLAQLHQLRGRVGRG++ S+C+
Sbjct: 521 MEAFAGNRTQILVATTVIEVGVDVPNSSLIIIEGADRFGLAQLHQLRGRVGRGDKSSTCL 580

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LL    L + S  RL++++ T DGF IAEEDLK R  GE+LG +QSG  +  +A PE   
Sbjct: 581 LLRGNALGETSRARLALMRETNDGFRIAEEDLKLRGAGEVLGTRQSGEAQLKLATPEHVA 640

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +L++ AR DA  ++ +D  L S RGQ+ R  LYL++ + A   +R G
Sbjct: 641 ALVDAARDDANLLIERDGGLDSARGQAARTCLYLFEKDAAVGLLRGG 687


>gi|126726436|ref|ZP_01742277.1| ATP-dependent DNA helicase RecG [Rhodobacterales bacterium
           HTCC2150]
 gi|126704299|gb|EBA03391.1| ATP-dependent DNA helicase RecG [Rhodobacterales bacterium
           HTCC2150]
          Length = 696

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/700 (42%), Positives = 434/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  G+G K +       N    + T+  DLLF  P + IDR  R  I
Sbjct: 4   RPPVLFPLFAALETLDGIGPKTAK------NFEGLDVTKPRDLLFTLPYAGIDRRKRATI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                  +VT+   +  H+     K RPY++ + D T E  L+FF+ + + ++ +   G+
Sbjct: 58  KGADLPGVVTVEVEVGHHNPPS-HKSRPYRVTVMDETTEFQLVFFHARGDYVQKLLPTGQ 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+++       MVHP ++   +   + P+ E +Y L  G++  +  K I   + R
Sbjct: 117 RRVVSGRVELFDGIAQMVHPDHVLSPNAANSIPVFEPIYPLTHGVTQKMITKAIKGVMQR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP++ EWI+     +  +P    A    H+P    DF   +P R RLAYDE+ A QI L 
Sbjct: 177 LPMVEEWIDPSQKAQAEWPDWNLAITKAHHPENMGDFGANTPERLRLAYDEMFAHQITLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R +   + G      GK+  K+L  +P++PT +Q   IK+I  D++   RM R+LQGD
Sbjct: 237 LARARNSAKPGRISKSTGKLQNKVLAALPYNPTSAQARTIKEIQADLNSNKRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVAL+A+ A VEAGGQ V+MAP  ILA+QH + ++   ++  +++E++TG    
Sbjct: 297 VGAGKTLVALMALLAVVEAGGQGVMMAPTEILARQHLDGLRPLAESAGVVLELLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R   L  +A+G  HI++GTHA+FQ  +++  L L IVDEQHRFGV+QR+ L  K  + 
Sbjct: 357 RERAAKLAALANGDIHILVGTHAVFQKDVEFQDLRLAIVDEQHRFGVRQRMDLGAKGPSA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GR PIKT ++  +R+D+V+  L+  +SE
Sbjct: 417 DVLVMTATPIPRSLALAQFGDMDVSILDEKPPGRTPIKTAMVANSRLDQVVGNLQRAVSE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNG 540
           GK+AYW+CP ++E + S+  +  ERF  L       ++ ++HG+M   +K++ M  F +G
Sbjct: 477 GKQAYWVCPLVDESEVSDLTAAEERFKRLRAVMPDGTVGLVHGQMPPAEKDAAMARFISG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG+DV +A+I++IE AE FGLAQLHQLRGRVGRG   S+C+LLY PPL
Sbjct: 537 ETKILVATTVIEVGVDVPNATIMVIERAESFGLAQLHQLRGRVGRGAAASTCVLLYAPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL VL++TEDGF IAEEDL  R  G+++G  QSG+PKF IA  E   SL++IA+
Sbjct: 597 SEGGERRLRVLRDTEDGFKIAEEDLAMRGAGDLIGTAQSGLPKFRIADLENQASLMQIAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L + RG++ R+LL+L + ++A + I  G
Sbjct: 657 SDARKLLHDDPILETPRGKAARVLLWLMEQDQAIRLISVG 696


>gi|86749969|ref|YP_486465.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
 gi|86572997|gb|ABD07554.1| ATP-dependent DNA helicase RecG [Rhodopseudomonas palustris HaA2]
          Length = 728

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 313/702 (44%), Positives = 439/702 (62%), Gaps = 4/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLFAP++   GVG K       +++    +  R  DLL + P S IDR  RPK
Sbjct: 29  MRPALLNPLFAPVTGLTGVGPKQDKLFRYLLD--RDDTPRLADLLLHLPVSVIDRRSRPK 86

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     +VT+   + +H      + R PY +  +D TG++ L FF  K E ++ +   
Sbjct: 87  IRDAQPGTVVTLEVTVDRHRPPPPGRSRAPYLVYASDETGDVILTFFRAKPEFVEKLLPV 146

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V+G  +     + +VHP  +         P I+ VY L  GL++   ++ + +AL
Sbjct: 147 GAKRYVSGTGQLYDGTLQIVHPDRVVDEEGFAKLPKIDPVYPLTEGLAIGSLRRAVAQAL 206

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +RLP LPEWI  ++L++ SFP+ AEA   +H P +  D     P   RLAYDELLAGQ+A
Sbjct: 207 TRLPALPEWISPEVLRRCSFPAFAEALQRVHIPHEPTDILPDGPFWSRLAYDELLAGQLA 266

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G++  KI+  +P++ T SQ++A   I +D+ Q  RMLR+LQ
Sbjct: 267 LALVRAQLRRPAGTRNAGDGRLRHKIIDALPYALTASQQAAAAAIAEDLQQPVRMLRLLQ 326

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  EAG QA +MAP  ILA+QH + I    +   + V I+TG  
Sbjct: 327 GDVGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHIKTIAPLAERAGMQVAILTGRE 386

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR  L R+  G+   ++GTHAL QD + Y  L L +VDEQHRFGV++RL LT K  
Sbjct: 387 KGKERRDLLARLEAGEIDFLVGTHALIQDDVTYNSLALAVVDEQHRFGVRERLALTSKGD 446

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  VL+++ATPIPRTLVLT  GD+D+S++ EKPAGR+PI T  +   R+ EVI+ +   +
Sbjct: 447 AVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRALSDTRLPEVIDGIGRAI 506

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           + GK+ YWICP +EE +        +R+ SL + F    + ++HGRM   DK+ VM  F 
Sbjct: 507 AAGKRVYWICPLVEESENVKLTDAEQRYESLRQRFGDQQVGLVHGRMKGADKDRVMAQFA 566

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTV+EVG+DV +ASI++IENAE FGLAQLHQLRGR+GRG E S+C+LLY  
Sbjct: 567 GGEISVLVATTVVEVGVDVPEASIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYKE 626

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + S  RL V++ T DGF IAEEDLK R EG++LG +QSG+P + IA+ E+H  L+  
Sbjct: 627 PLGEMSAARLRVIRETADGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSEVHGQLITQ 686

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR +A  IL  +P L    G+++R LLYLY+ +EA   + AG
Sbjct: 687 ARDEALRILEDNPKLEGPSGEALRCLLYLYERDEAIPLLGAG 728


>gi|89069524|ref|ZP_01156868.1| Haem peroxidase [Oceanicola granulosus HTCC2516]
 gi|89044859|gb|EAR50949.1| Haem peroxidase [Oceanicola granulosus HTCC2516]
          Length = 696

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 296/700 (42%), Positives = 421/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA LS   G+G K +  L+       A   +  D+LF  P S IDR  R  +
Sbjct: 4   RPEPLWPLFADLSELDGIGPKTAKALA------GAGIGKPRDMLFTLPHSGIDRTLRATV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            E+      T+   I  H        RPY++ + D   +  L+FF  + E ++     G+
Sbjct: 58  REVVPPATATVEVEIGAHHPPS-GPSRPYRVTVRDAETDFQLVFFRARGEWMRKQLPTGQ 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP +I   ++    P  E VY L  G++  L  +    AL R
Sbjct: 117 RRIVSGKVELFDGIAQMVHPDHIVTRAEAEALPSYEPVYPLSGGVTQKLMWRATRSALER 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P L EWI+  L+ ++ +PS   A +  H P        T PAR RLAYDE LA QI L 
Sbjct: 177 APRLAEWIDPGLMLREGWPSWHAALHAAHAPASGAALAPTDPARRRLAYDEFLAHQITLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G     +G + +++L  +P++PT +Q  AI +I  DM+ + RM R+LQGD
Sbjct: 237 LARASMRRGRGRATAGDGALRERVLAALPYAPTGAQTRAISEIAADMAAETRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVAL+A+  AVEAGGQ V+MAP  ILA+QH+E ++    +  I +E++TG    
Sbjct: 297 VGAGKTLVALMALLVAVEAGGQGVMMAPTEILARQHHEGLRPLAASAGIRLELLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R   L  +A G+  +++GTHA+FQ  + +  L L +VDEQHRFGV QR++L  K    
Sbjct: 357 RVRDDKLTALAAGEIDVLVGTHAVFQKDVTFADLRLAVVDEQHRFGVAQRMELGAKGARA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKPAGR PIKT +I   RIDEV+  L+  L+E
Sbjct: 417 DVLVMTATPIPRSLSLAQYGDMDVSILDEKPAGRLPIKTSMISAGRIDEVVVSLRRALAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP ++E + S   +   R   L        + ++HG+M    K++ M  F  G
Sbjct: 477 GRRAYWVCPLVDESEVSELTAAEARHKMLRAALGEGVVTLVHGQMPPAQKDAAMADFAAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+DV +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+LLY PPL
Sbjct: 537 RAQVLVATTVIEVGVDVPEASIMVIEGAESFGLAQLHQLRGRVGRGAAASTCLLLYRPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL +L+ TEDGF IAEEDL  R  G+++G  QSG+P+F I   E   +L+ +A+
Sbjct: 597 SETGRRRLEILRETEDGFRIAEEDLAMRGAGDLIGTAQSGLPRFRIGDVERQAALMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDL+S RGQ++R+LL+L + ++A + I  G
Sbjct: 657 SDARKLLHDDPDLSSERGQAVRMLLWLMEQDKAIRLITVG 696


>gi|316934179|ref|YP_004109161.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315601893|gb|ADU44428.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 700

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 311/702 (44%), Positives = 443/702 (63%), Gaps = 4/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLFAP+++  GVG K       +++    +  R  DLL + P+S IDR  RPK
Sbjct: 1   MRPALLNPLFAPVTSLSGVGPKQDKLFRYLLD--RDDTPRLADLLLHLPTSVIDRRARPK 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     +VT+   + +H +    + R PY +  +D TG++ L FF  K + ++ +   
Sbjct: 59  IRDAVPGTVVTLEVTVDRHRAPPPGRSRAPYLVYASDDTGDVVLTFFRAKPDYVQKLLPV 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V+G  +     + +VHP  +         P I+ VY L  GL++   ++ + +AL
Sbjct: 119 GAKRYVSGTGQLYDGTLQIVHPDRVVDEEAFAKLPQIDPVYPLTEGLAIGSLRRAVAQAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           ++LP LPEWI  ++L++  FPS AEA   +H P +  D     P   RLAYDELLAGQ+A
Sbjct: 179 TKLPALPEWISPEVLRRCRFPSFAEALKHVHIPDQPTDILPDGPYWSRLAYDELLAGQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G++  KI+  +P++ T SQ+ A   I +D+ Q  RMLR+LQ
Sbjct: 239 LALVRAQLRRPAGSRNAGDGRLRHKIIDALPYALTASQQQAAAAIAEDLRQPVRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  EAG QA +MAP  ILA+QH + I    +   + V I+TG  
Sbjct: 299 GDVGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHIKTIAPLAERAGMQVAILTGRE 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+ LER+A G+   ++GTHAL QD + Y  L L +VDEQHRFGV++RL LT K  
Sbjct: 359 KGKERREILERLAAGEIDFLVGTHALIQDDVIYKSLALAVVDEQHRFGVRERLALTSKGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL+++ATPIPRTLVLT  GD+D+S++ EKPAGR+PI T  +   R+ EVI+ +   +
Sbjct: 419 DVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRTLSDTRLPEVIDGIGRAI 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           + GK+ YWICP +EE +        +R+ SL + F    + ++HGRM   DK+ VM  F 
Sbjct: 479 AAGKRVYWICPLVEESENVKLTDAEQRYESLRQRFGDHQVGLVHGRMRGSDKDHVMGQFA 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTV+EVG+DV +A+I++IENAE FGLAQLHQLRGRVGRG + S+C+LLY  
Sbjct: 539 RGEISVLVATTVVEVGVDVPEATIMVIENAERFGLAQLHQLRGRVGRGADASTCLLLYRE 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + S  RL V+++T DGF IAEEDLK R EG++LG +QSG+P + IA+ E+H  L+  
Sbjct: 599 PLGELSGARLRVIRDTTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSEVHAQLITQ 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR +A  IL  +P L    G+++R LLYLY+ +EA   + AG
Sbjct: 659 ARDEALRILKDNPKLEGPSGEALRCLLYLYERDEAIPLLGAG 700


>gi|114570037|ref|YP_756717.1| ATP-dependent DNA helicase RecG [Maricaulis maris MCS10]
 gi|114340499|gb|ABI65779.1| ATP-dependent DNA helicase RecG [Maricaulis maris MCS10]
          Length = 694

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 289/701 (41%), Positives = 427/701 (60%), Gaps = 8/701 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLF  ++   G+G + +  + K+  CG     R  D+LF  P   +DR  R  
Sbjct: 1   MRPEILFPLFQDVTKLPGIGPRLATLVEKV--CGG----RIRDVLFTPPVGLVDRTRRVT 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I++     IVT+T  +  H   Q Q + PYK+ L D TG + L+FF+ + + L  +  EG
Sbjct: 55  ITDAPTGEIVTLTATVETHIPAQRQGQ-PYKVRLRDETGFLHLIFFHARRDYLTKLLPEG 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               ++GK ++  + I +VHP  +    +     L+E VY L  GL+  + +K +  +L+
Sbjct: 114 ETRVISGKAERFGSEIQIVHPDLVITEDEASEMALVEPVYPLTAGLTAKVMRKAVAGSLT 173

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            +P LPEWI  DL     +PS   A   IH P+ A   +  +P R+RLA+DE+ A Q+AL
Sbjct: 174 FVPELPEWIPGDLRGSHGWPSFKPALKAIHAPQNASGLDAGAPERQRLAFDEIFARQLAL 233

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++R   + + G P+    +  + +L   PF PT +Q  A ++I  DM    RM R+L G
Sbjct: 234 QIVRAHRRAQSGRPLAGSDEAVRVVLDAAPFKPTGAQIRAFEEIRTDMQSDARMTRLLHG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG+GKT VA +A A A  AG Q  IMAP  ILA+QH + + +  +   + V  +TG   
Sbjct: 294 DVGAGKTFVAALAAAHAAGAGVQTAIMAPTEILARQHEKTLSQMLEPAGLSVIALTGRDK 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R   LER+A+G+  I+ GTHALFQD I++  L LV++DEQHRFGV  R++LT K   
Sbjct: 354 GKARAALLERMANGKVDIVCGTHALFQDGIEFADLGLVVIDEQHRFGVSDRMRLTSKGQR 413

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P  L+MTATPIPRTL L   GD+D+S++ EKPAGR P  T ++ + R+DEV+E ++  + 
Sbjct: 414 PDTLVMTATPIPRTLSLAVYGDLDVSRLDEKPAGRIPPDTRLVSMERLDEVVEGVRRAIG 473

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKN 539
            G + YW+CP +EE + S   +  +R+  L        + ++HGRM   +KE +   F+ 
Sbjct: 474 RGDRVYWVCPLVEESEMSELSAAEDRWRHLRAVLGDDRVGLLHGRMKPAEKEDIATRFRA 533

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+ATTVIEVG+D  DA+++IIE+AE FGLAQLHQLRGRVGRG++ SSC+LLY  P
Sbjct: 534 GEMDVLVATTVIEVGVDAPDATVMIIEHAERFGLAQLHQLRGRVGRGDKPSSCLLLYKAP 593

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + +  RL +++ T+DGFLIAEED + R  G+ LG++QSG+P+F +A  E H  L+E+A
Sbjct: 594 LGETARARLEMMRETDDGFLIAEEDWRLRGAGDPLGLRQSGLPQFRLADLEQHSELIELA 653

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
              A+ I+ QDPDL    G ++R LLYL+ +++  +F+R+G
Sbjct: 654 NDHARLIVHQDPDLKGDSGDALRTLLYLFDHDQGVRFLRSG 694


>gi|85717291|ref|ZP_01048245.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
 gi|85695880|gb|EAQ33784.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
          Length = 699

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 300/701 (42%), Positives = 437/701 (62%), Gaps = 3/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFAP+++  GVG +       ++  G  +  R IDLLF+ P+S IDR  RP+
Sbjct: 1   MRPPLLNPLFAPVTSLSGVGPRQDKLFRYLL--GRQDTPRLIDLLFHLPASVIDRRARPR 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     +VT+   + +H      + R P+ +  +D TG++ L +F  +   ++ +   
Sbjct: 59  IRDAVPGTVVTLEVTVDRHRPAPPGRSRAPHLVYASDETGDVVLTYFRAQPGYVEKLLPV 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V+G ++     + +VHP  +   S       I+ VY L  GL++   ++ I +AL
Sbjct: 119 GSKRYVSGTVQMFDGALQIVHPDRVVDESGLAALSAIDPVYPLTEGLALGSLRRAIAQAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            ++PVLPEWI+  +L++  FPS+ +A   +H P +  D     P   RLA+DELLAGQ+A
Sbjct: 179 QKMPVLPEWIDPKILRRCGFPSLEQAIRRVHAPLELADILPEGPFWSRLAFDELLAGQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G +   I+  +P++ T SQ  A+  I +D+ Q  RMLR+LQ
Sbjct: 239 LALVRAQLRRPAGNRHAGDGHLRNTIIDALPYALTASQRQAVAAISEDLRQPVRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A  A  EAG Q  +MAP  +L +QH + I        + V I+TG  
Sbjct: 299 GDVGSGKTVVALLAAGAVAEAGKQTALMAPTEVLVRQHIKTIAPLADRAGLRVAILTGRE 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+   R+A G   +I+GTHAL QD + +  L L +VDEQHRFGV+QRL LT K  
Sbjct: 359 KGKERREITARLARGDIDLIVGTHALIQDDVTFRSLALAVVDEQHRFGVRQRLALTAKGE 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  VL+++ATPIPRTLVLT  GD+D+S++ EKPAGR PI T  +   R++EV++ +   +
Sbjct: 419 AVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRLPIDTRAVSDRRLNEVVDAVGRAV 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G+ AYWICP +EE    +     +RF SL   F   + ++HG+M   +K+ VM  F +
Sbjct: 479 KAGRLAYWICPLVEESDAVDLSDAEQRFQSLKARFGDRVGLVHGKMRGPEKDRVMAQFAS 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   LL+ATTV+EVG+DV  A++++IENAE FGLAQLHQLRGR+GRG E S+C+LLY  P
Sbjct: 539 GEINLLVATTVVEVGVDVPAATVMVIENAERFGLAQLHQLRGRIGRGSEPSTCLLLYREP 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + S  RL V++ T DGF IAEEDLK R EG++LG +QSG+P + IA+ ++H  L+ +A
Sbjct: 599 LGEMSAARLRVIRETTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSDVHAQLITLA 658

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R +A  IL Q+P+LT   G+++R LLYL++ +EA   + AG
Sbjct: 659 RDEALRILKQNPNLTGAHGEALRCLLYLFERDEALPLLGAG 699


>gi|83858280|ref|ZP_00951802.1| RecG, ATP-dependent DNA helicase [Oceanicaulis alexandrii HTCC2633]
 gi|83853103|gb|EAP90955.1| RecG, ATP-dependent DNA helicase [Oceanicaulis alexandrii HTCC2633]
          Length = 697

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/704 (41%), Positives = 439/704 (62%), Gaps = 11/704 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFA L+T +GVG + +  + K+         R  DL+F  P+  +DR +R  
Sbjct: 1   MRPQSLFPLFADLTTLKGVGPRLAALMEKVAG------PRVKDLVFTAPTGLVDRTHRVS 54

Query: 61  ISEISE---ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVF 117
           IS+  +   + +VTI   +  H      K+ PYK+ + D TG + L+FF  K++ L+ + 
Sbjct: 55  ISDAGDAGAQTLVTIEAEVEAHIPRPTMKQ-PYKVRMRDETGWLHLIFFNAKSDYLRRML 113

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
            EG +  V+GK ++  + I +VHP  I    +  +  L++ VY L  GLS+++ +K + E
Sbjct: 114 PEGSRRIVSGKAERFASEIQIVHPDLIADPKEVEDADLLQPVYPLTAGLSINVMRKAMRE 173

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           ALS LP LPEWI+  L  ++ +    EA   +H P+   D E ++  R+RLA+DEL A Q
Sbjct: 174 ALSTLPDLPEWIDAPLKAREGWLGWREALLELHAPQSGLDLEPSALVRKRLAFDELFAHQ 233

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L R+  K   G P++ +G+I  K+L + PF+PT +Q  A +    DM    RM+R+
Sbjct: 234 LALKLARRDRKARKGRPLSGDGRIVVKVLEHAPFTPTGAQMRAFEACKTDMDSSQRMMRL 293

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVGSGKT VA +  A A EAG Q  +MAP  I+A+QH + +    +   + V  +TG
Sbjct: 294 VHGDVGSGKTFVAALCAAHAAEAGVQTALMAPTEIVARQHAKVLTALLEPAGVSVVALTG 353

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 R++   +IA G A +I GTHALFQDS+++  L  V++DEQHRFGV  R KLT K
Sbjct: 354 RDKGKPRKEIEAQIASGDAQVICGTHALFQDSVEFSDLGFVVIDEQHRFGVSDRRKLTMK 413

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             AP VL M+ATPIPRTL L + GD+D+S++ EKPAGR P  T ++   R+ E++E LK 
Sbjct: 414 GRAPDVLAMSATPIPRTLTLAAFGDLDVSRLDEKPAGRIPPDTRVVSGERLHEIVEGLKR 473

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDS 536
            LS+G++AYW+CP +E+   S+  +   R + L E    + I ++HGRM   DK+   + 
Sbjct: 474 ALSKGERAYWVCPLVEDSDVSDLAAAEARHHMLSEMLPEARIGLVHGRMPARDKQKAAED 533

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G   +L+ATTVIEVG+D  DA+I++IE+AE FGLAQLHQLRGRVGRG++ S+C+LLY
Sbjct: 534 FRAGEIDVLVATTVIEVGVDAPDATIMVIEHAERFGLAQLHQLRGRVGRGDKPSTCLLLY 593

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H  L + +  RL ++++++DGF+IAEED + R  G+ LG+KQSG+P + IA    H  LL
Sbjct: 594 HGQLGETARARLEIMRSSDDGFVIAEEDWRLRGSGDPLGLKQSGLPDYRIADLAAHADLL 653

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           E+A   A++   ++      RG+++R LLYL++ +E  + +R+G
Sbjct: 654 ELASDAAQYETAREEVFAGERGEALRTLLYLFERDEGVRLMRSG 697


>gi|298291679|ref|YP_003693618.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296928190|gb|ADH88999.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 694

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 299/702 (42%), Positives = 436/702 (62%), Gaps = 11/702 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           +RP  LNP FA ++   G+G K +   ++++  G   E R +DLL + P+S IDR  RP 
Sbjct: 2   LRPDLLNPYFASITGLPGIGPKLAKPFNRLL--GREGEARVLDLLMHLPASTIDRRARPT 59

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           +S++  + +VT+   + +H       R PY++  +D TG+I L +F      ++ +   G
Sbjct: 60  LSQVVPDTVVTLEIVVDRHVPTPRGSRAPYRVYAHDETGDIMLAYFKADRSWMERLLPVG 119

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               ++G +        M HP  +   +     P IE VY L  GL     ++ +  AL+
Sbjct: 120 ETRWISGTVTLYDGMAQMTHPDRVVDAAGLAKLPPIEPVYPLVEGLGHGHVRRAVEAALA 179

Query: 181 RLPVLPEWIEKDLLQKKSFPSIA--EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           +   LPEW       +   P I    A   +H P+   D     PA  RLAYDELLAGQ+
Sbjct: 180 QTAELPEW-------QGEAPGIGFHAALRKVHQPQDTLDASPAGPAWRRLAYDELLAGQL 232

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R +  K++G P   +G ++++I   +PFS T SQ  A+K I  D++ ++RMLR+L
Sbjct: 233 ALALVRARTTKQVGRPSVGDGSLSRRIEAALPFSLTGSQVEALKAIRADIASQDRMLRLL 292

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL+A A+ +E G QA +MAP  ILA+QH + I+   Q   + + ++TG 
Sbjct: 293 QGDVGSGKTVVALLAAASVIETGRQAALMAPTEILARQHMKTIEPLAQAAGLRLALLTGR 352

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L  +A+G+  ++IGTHALFQ+ + +  L L IVDEQHRFGV QRL L  K 
Sbjct: 353 EKGRAREALLTALANGEIDLVIGTHALFQEGVAFRDLALAIVDEQHRFGVHQRLALAAKG 412

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            A  VL+MTATPIPRTLVLT  GD+D S++ EKPAGRKPI T  IP++RIDEV+  L   
Sbjct: 413 EAVDVLVMTATPIPRTLVLTYFGDMDSSELREKPAGRKPIDTRAIPLDRIDEVVASLGRA 472

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L+EG++AYWICP +EE + S+  +   R   L   F + + ++HG+M   +K++ M +F 
Sbjct: 473 LAEGRRAYWICPLVEESENSDLAAAEARAGELRAWFGNRVGLVHGKMKGAEKDAAMAAFA 532

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++L+ATTV+EVG+DV +ASII+IE+AE FGLAQLHQLRGRVGRG+  S+C+LLY  
Sbjct: 533 AGETQILVATTVVEVGVDVPEASIIVIEHAERFGLAQLHQLRGRVGRGDAASTCLLLYRR 592

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  R+  L+ +EDGF +AE+DLK R EG++LG +QSG P F +A+ E+H  LLE 
Sbjct: 593 PLGEIARQRIEALRESEDGFFLAEQDLKLRGEGDVLGTRQSGFPGFRLARLEVHGDLLER 652

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR++A   +  D DL    G S+R+LL++++ + A + + AG
Sbjct: 653 ARREATATVKNDSDLIGPNGPSLRLLLHIFERDVAVKLLNAG 694


>gi|294083795|ref|YP_003550552.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663367|gb|ADE38468.1| DEAD/DEAH box helicase domain protein [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 696

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 289/702 (41%), Positives = 435/702 (61%), Gaps = 14/702 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L  LFA  ++  GVG K +  L K +       +  ID+L + P + IDR  +P +
Sbjct: 6   RPQELFQLFAATTSLPGVGAKLAAILEKRVG------SYVIDVLRHLPIAIIDRSQKPPL 59

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             + +  I T    + +H       RRP+++   + TG I L+FF+ + + ++ +   G 
Sbjct: 60  DAVIDGAIATFDIIVVKHDKPPRGVRRPWRVFCQNDTGSIELVFFHARDDYIQRLLPVGE 119

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  ++G+ +   NR+ M HP Y+    +  + P IE VY L  GL+  + ++ I  AL+ 
Sbjct: 120 RRIISGRTEIFNNRVQMAHPDYVVKPDEMASMPEIEPVYPLTAGLTPKVLRRAITAALAT 179

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P LPEWI   ++   ++P  A A   +H P+   D    +PAR RLA+DELLA QIAL 
Sbjct: 180 IPTLPEWIPPSIMATNNWPDFASAMRTVHAPQNEADLLPNNPARARLAFDELLANQIALN 239

Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           ++R+Q    + G      G + + ++ N+PF+ TK+Q +AI +I  D     RMLR+LQG
Sbjct: 240 MVRQQAADTVPGRIFAGTGTLTRALMDNLPFALTKAQTNAIAEIKSDQESGKRMLRMLQG 299

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG-NM 359
           DVGSGKTLVAL AM   VE+G QA ++ P  +LA+QHY+ + K          ++ G   
Sbjct: 300 DVGSGKTLVALAAMLHVVESGAQAALLVPTEVLARQHYQSLNKMLAPIGKSASLLLGQGR 359

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             + R+  L  +A G   I++GTHAL  +++ +  L L +VDEQHRFGV+QRL L QK  
Sbjct: 360 TGSGRKDTLSGLADGTIDIVVGTHALLSENVAFADLGLAVVDEQHRFGVRQRLILGQKGN 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL+MTATPIPR+L +T+ GD++ S++ EKPAGR  I T ++P +R+D+VI+ ++  L
Sbjct: 420 GVDVLVMTATPIPRSLAMTAYGDLEQSRLNEKPAGRLAIDTRVMPNDRLDQVIDGIRRAL 479

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
             GK+AYWICP +EE  + +  +  +RF SL     +  +A+ HG+M   +++  M +F+
Sbjct: 480 DAGKRAYWICPLVEESDKLDIAAAEDRFASLVRALPAHKVALAHGKMKAPERDEAMQAFR 539

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G+ +LL+ATTV+EVG+DV +ASI+IIE+AE FGLAQLHQLRGRVGRG + SSCIL+Y P
Sbjct: 540 DGSAQLLVATTVVEVGVDVPEASIMIIEHAERFGLAQLHQLRGRVGRGADKSSCILVYAP 599

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           P+S  S TRL+V+++TEDGF+IAEEDLK R  GE LG +QSG+P+F++A    H  LL +
Sbjct: 600 PISDTSKTRLTVMRDTEDGFVIAEEDLKLRGPGEFLGQRQSGVPEFILADLGAHADLLSL 659

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR +A+ + T    LT        +LL L++ + A +++ AG
Sbjct: 660 ARTEARRMATDGTALTYS-----DMLLSLFERDSAVRYLAAG 696


>gi|126729670|ref|ZP_01745483.1| ATP-dependent DNA helicase RecG [Sagittula stellata E-37]
 gi|126709789|gb|EBA08842.1| ATP-dependent DNA helicase RecG [Sagittula stellata E-37]
          Length = 696

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 290/700 (41%), Positives = 430/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L    G+G K +  L+       A      DLL+  P S  DR  R  +
Sbjct: 4   RPEPLWPLFADLKGLDGIGPKTAQTLA------GAGVEAPRDLLYTLPYSVTDRRARDTV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                   +T+   I +H   +  +   Y+I ++D      L+FF   +E  + +F  G+
Sbjct: 58  QGADLPATLTVEVLIGRHWPPR-TRGGAYRIEVDDAKVRFQLVFFRGNSEYQQKLFPTGQ 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+++       MVHP ++    +  + P  E VY L   ++  L  + I + L+R
Sbjct: 117 RRLVSGRVELFDGVPQMVHPDHVLPVDEADSLPSFEPVYHLTGNVTQKLMVRAIADGLTR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P L EWI+   ++K+ +P  AEA   +H P   +D   T+PAR RLAYDEL+A Q+ L 
Sbjct: 177 VPDLEEWIDAAQMKKEGWPGWAEALARVHAPDGPEDMSPTAPARARLAYDELMAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   +K  GI    +G++  ++L  +P+ PT +Q  AI +IL DM+   RM R+LQGD
Sbjct: 237 LARAARRKRRGIETKGDGRLQARVLAALPYQPTGAQTRAIGEILADMAHPERMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVAL+A+  AVEAGGQ V+MAP  ILA+QH + ++   ++  +++EI+TG    
Sbjct: 297 VGAGKTLVALMALLNAVEAGGQGVMMAPTEILARQHLDSLRPLAESAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R   L  +A G   I++GTHA+FQ  + +  L L IVDEQHRFGV+QRL+L +K    
Sbjct: 357 AERAAKLAALAQGDIQILVGTHAVFQADVVFADLRLAIVDEQHRFGVRQRLELGKKGAGA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L+  GD+D+S + EKP GR P+KT ++   ++ EV++ L+  ++E
Sbjct: 417 DVLVMTATPIPRSLALSQYGDMDVSILDEKPPGRTPVKTALLSTEKMAEVVDHLRKAVAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE + S+  +   RF  L        + ++HG+M   +K++ M  F +G
Sbjct: 477 GRQAYWVCPLVEESESSDLIAAEARFQRLRAALGEGVVGLVHGQMPPAEKDAAMARFVSG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG++V +ASI++IE AE FG+AQLHQLRGRVGRG   S+C+L+Y PPL
Sbjct: 537 ETSVLVATTVIEVGVNVPNASIMVIERAEIFGIAQLHQLRGRVGRGTAASTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL+ L+ TEDGF IAE DL+ R  G+++G  QSG+PKF +A  E   +L+E+A+
Sbjct: 597 SETGMKRLTTLRETEDGFRIAEVDLEMRGAGDLIGTAQSGLPKFRVADLERQAALMEVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L S RGQ+ R LL+L + +EA + I  G
Sbjct: 657 SDARRLLADDPTLESPRGQAARSLLWLMRQDEAIRLIEVG 696


>gi|254451504|ref|ZP_05064941.1| ATP-dependent DNA helicase RecG [Octadecabacter antarcticus 238]
 gi|198265910|gb|EDY90180.1| ATP-dependent DNA helicase RecG [Octadecabacter antarcticus 238]
          Length = 690

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 285/697 (40%), Positives = 424/697 (60%), Gaps = 8/697 (1%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            L PLF  L +  G+G K +    + +   N  + R  DLLF  P S +DR  R  I ++
Sbjct: 1   MLWPLFGSLESLDGIGPKSA----QALIAANIEKPR--DLLFTLPHSGVDRRRRDSILDV 54

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
               + T+   I QH++      RPY++ + D      L+FF   +E L+     G++  
Sbjct: 55  HAPAVCTVEVTIGQHTAPS-SPGRPYRVTVEDQRTTFQLVFFRSHSEYLRKQLPTGQRRV 113

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           V+GKI+       MVHP +I    +    PL E VY L   ++     K   + L ++P 
Sbjct: 114 VSGKIELFDGVGQMVHPDHILTPDEAEQIPLFEPVYPLTGTMTQKAMFKATADLLGQVPG 173

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L EWI+  L  ++ +P    A  + H P  + +   TS AR+RLAYDE+LA Q+ L L R
Sbjct: 174 LAEWIDPALRAREGWPDWGAALALAHRPMSSAELSSTSAARQRLAYDEVLAHQLTLALAR 233

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            Q ++  G     +G    K+L  + FSPT +Q  A  +I +DM++  RM R+LQGDVGS
Sbjct: 234 AQQRRGKGRVTAGDGARQAKVLAALGFSPTGAQIRATAEIAEDMAKPYRMNRLLQGDVGS 293

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVAL+++  AVEAGGQ V+MAP  ILA+QH E ++   +   +++E++TG      R
Sbjct: 294 GKTLVALMSLLNAVEAGGQGVMMAPTEILARQHLEGLRPLAEGAGVVLELLTGRDKGGER 353

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R  LE +A G   I++GTHA+FQ  + +  L L I+DEQHRFGV QR++L  K  +  VL
Sbjct: 354 RAKLEALAAGDIQILVGTHAVFQKDVVFADLRLAIIDEQHRFGVAQRMELGAKGASVDVL 413

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPR+L L   GD+D+S + EKP GR P+ T ++  +++D+VIERL+  +++G++
Sbjct: 414 VMTATPIPRSLALAQYGDMDVSVLDEKPPGRSPVTTALVATSKMDQVIERLRAAVADGRQ 473

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCK 543
            YW+CP +EE + S+  +  +RF  L        + ++HG+M   +K++ M  F +G  K
Sbjct: 474 CYWVCPLVEESEVSDMTAAEDRFKRLRAALGEDVVGLVHGQMPPANKDAAMRKFVSGETK 533

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+L+Y  PLS++
Sbjct: 534 VLVATTVIEVGVNVPNASIMVIERAESFGLAQLHQLRGRVGRGATKSTCLLMYQAPLSES 593

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              RL +++ TEDGF I+EEDL  R  G+++G  QSG+P F IA  E   +L+ +A+ DA
Sbjct: 594 GRQRLEIMRETEDGFRISEEDLAMRGAGDVIGTAQSGLPIFRIADLERQTALMALAQTDA 653

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           + +L  DP L S RG + R+LL+L + ++A + I  G
Sbjct: 654 RKLLLDDPKLESARGTAARVLLWLMEQDKAIRLISVG 690


>gi|27379714|ref|NP_771243.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110]
 gi|27352866|dbj|BAC49868.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 702

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 313/705 (44%), Positives = 442/705 (62%), Gaps = 8/705 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANET-RFIDLLFYHPSSFIDRHYRP 59
           MRPS LNPLFAP+++  GVG K    L  +++    NET R +DLL + PS  IDR  RP
Sbjct: 1   MRPSLLNPLFAPVTSLPGVGPKQDKLLQYLLS---RNETPRLVDLLLHLPSQVIDRRARP 57

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFF 118
           KI +  +  +VT+   + +H     +  R  Y +  +D TG++ L FF  K   ++ +  
Sbjct: 58  KIRDAVQGTMVTLEVTVDRHRPPPPRNARAPYLVYASDETGDVVLTFFRAKPGYVEKLLP 117

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G K  V+G ++       +VHP  +           I+ VY L  GL++   ++ I +A
Sbjct: 118 VGEKRYVSGTLQMYDGIPQIVHPDRVLDEEAISKLSGIDPVYPLTEGLALGSLRRAIAQA 177

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L +LP LPEWI  +++++  FP IAEA   +H P +  D     P   RLA+DELLAGQ+
Sbjct: 178 LQKLPALPEWISPEVMRRCHFPPIAEALTRVHQPVELTDILPDRPFWSRLAFDELLAGQL 237

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R Q ++  GI    +G +  KI+  +P++ T SQ  A   I  D+ Q  RMLR+L
Sbjct: 238 ALALIRAQLRRPAGIRNAGDGHLRNKIIDALPYALTLSQRDAAAAIASDLQQPVRMLRLL 297

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL+A AA  E G QA +MAP  ILA+QH + I    +   + V I+TG 
Sbjct: 298 QGDVGSGKTVVALLAAAAVAEVGKQAALMAPTEILARQHIKTIAPLAERAGLRVAILTGR 357

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                RR+ + ++A G+  +++GTHAL QD + +  L L +VDEQHRFGV++RL LT K 
Sbjct: 358 EKGKERREIIAQLAEGEIDLLVGTHALIQDDVIFRDLALAVVDEQHRFGVRERLALTSKG 417

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            A  VL+++ATPIPRTLVLT  GD+DIS++ EKPAGR+PI+T  I ++R++EV + +   
Sbjct: 418 EAVDVLVLSATPIPRTLVLTYFGDMDISELREKPAGRQPIETRTISMSRLNEVTDSIGRA 477

Query: 479 LSEGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           L  GK  YWICP +EE +     +  +  +RF +L + F   + ++HG+M   +K+ VM 
Sbjct: 478 LQAGKLVYWICPLVEESEAEGTEHLTNATKRFENLQKRFGDRVGLVHGQMKGTEKDRVMG 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F      LL+ATTV+EVG+DV  A+I++IENAE FGLAQLHQLRGR+GRG E S+C+LL
Sbjct: 538 QFAAHEIGLLVATTVVEVGVDVPAATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PL + S  RL V++ T DGF IAEEDLK R EG++LG++QSG+P + IA+ E+H  L
Sbjct: 598 YSEPLGEMSKARLKVIRETTDGFRIAEEDLKLRGEGDVLGVRQSGLPGYRIARSEVHGQL 657

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +  AR +A  IL  DP L   RG+++R LLYLY+ +EA   I AG
Sbjct: 658 ITQARDEALRILKDDPKLKGERGEALRCLLYLYERDEAIPLIGAG 702


>gi|159044059|ref|YP_001532853.1| ATP-dependent DNA helicase RecG [Dinoroseobacter shibae DFL 12]
 gi|157911819|gb|ABV93252.1| ATP-dependent DNA helicase [Dinoroseobacter shibae DFL 12]
          Length = 696

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 287/700 (41%), Positives = 433/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP+ L PLFA L T  G+GKK +  L+ +      +  R  DL+F  PSS I+R     +
Sbjct: 4   RPAALFPLFAELETLPGIGKKTAQTLAHM------DIARPRDLIFTLPSSGIERRLVDTV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                  ++T+   +++H      K RPY+I + D    ITL++F+ + + L  +   G 
Sbjct: 58  QTGPFPSVMTVPVTVTRHLPPS-GKGRPYRIEVADAATTITLVYFHARGDYLMKLLPPGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  ++G+++    +  M HP ++   ++       E VY L  G++    +K +  AL R
Sbjct: 117 RRIISGRVELYDGQAQMPHPDHVLTEAEAETLGGFEPVYPLTAGITQKTMQKAVAGALDR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P L EW +  L+ ++ +P  A A    H P+  K+    +PAR RLAYDELLA Q  L 
Sbjct: 177 VPDLAEWADPALVAQEGWPDFASALASAHAPQSMKELGPDTPARRRLAYDELLAHQTTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G  +  +G+    +L  +P++PT +Q+  I +I +D++  +RM R+LQGD
Sbjct: 237 LARAHRRRAPGRRLTGDGRRVGPVLAALPYTPTGAQQRVISEITEDLAAPHRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVAL+AM  AVEAG QAV+MAP  ILA+QH   +    +   ++VE++TG    
Sbjct: 297 VGAGKTLVALVAMLLAVEAGTQAVMMAPTEILARQHLAALLPLAEAAGVVVEVLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R   L  +A G  HI++GTHA+FQD + ++ L L ++DEQHRFGV++R++L  K  A 
Sbjct: 357 RERAAKLAALAAGDIHILVGTHAVFQDDVAFHDLGLAVIDEQHRFGVRERMRLGAKGAAV 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L + GD+D+S + EKP GR P+KT ++  +R+DE++  L   LSE
Sbjct: 417 DVLVMTATPIPRSLALVTYGDMDVSILDEKPPGRTPVKTALVSADRLDELLAHLDAALSE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE +     +  ERF  L   F    + ++HG+M   +K++ M  F  G
Sbjct: 477 GRQVYWVCPLVEESETLALTAAEERFKHLRARFGEGRVGLVHGQMPVAEKDAAMADFVAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LL+ATTVIEVG+DV +ASI++IE AEHFGLAQLHQLRGRVGRG   SSC+LLY PPL
Sbjct: 537 ETRLLVATTVIEVGVDVPNASIMVIEGAEHFGLAQLHQLRGRVGRGSTASSCLLLYAPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + +  RL +++ TEDGF I+E D++ R  G+++G  QSG+P+F IA  E    L+ +A+
Sbjct: 597 GETATKRLKLMRETEDGFRISEADMEMRGAGDLIGTAQSGLPRFRIADLERQAGLMAMAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L +DP L S RG+++R+LL+L   +EA + I  G
Sbjct: 657 SDARALLAKDPKLDSPRGEAVRMLLWLTGQDEAIRLISVG 696


>gi|163736312|ref|ZP_02143731.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
 gi|161390182|gb|EDQ14532.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
          Length = 696

 Score =  567 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 293/700 (41%), Positives = 423/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T +G+G K +   ++I    +    R  DLL+  P S +DR  R  I
Sbjct: 4   RPEILFPLFAGLETLQGIGPKTAQHFAQI----DIETPR--DLLYSLPYSIVDRRRRDSI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +    + T+   I  H   +  K   Y+I ++D   E  L+FF+ ++  L+    EG 
Sbjct: 58  RGLDYPTVATVEVTIGAHRPAR-NKGGAYRIHVSDAEEEFQLVFFHGRSRYLEAQLPEGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++   ++  + P  E VY L  G+S     K    ALSR
Sbjct: 117 RRVVSGKLELFDGMAQMVHPDHMVPVAEAGDIPEFEPVYHLTHGVSQKTMFKAAQSALSR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EW +   ++K+ +P+  EA    H P         +P R RLAYDEL A Q+ L 
Sbjct: 177 LPELQEWADPSQVRKEDWPTWQEALVAAHTPDGMDALAAEAPGRTRLAYDELFAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + +   G      G +  ++L  +P+ PT +Q  AI +I  DM++  RM R+LQGD
Sbjct: 237 LARLRDRALPGRSSLANGTLQSRVLGALPYRPTGAQARAIDEITADMARDARMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E ++   +   +++EI+TG    
Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTEILARQHLEALRPLAETAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R      +A G   I++GTHA+FQ  + +  L L IVDEQHRFGV+QR++L +K    
Sbjct: 357 RERAAKCAALARGDIQILVGTHAVFQADVAFQDLRLAIVDEQHRFGVRQRMELAEKGKGA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L LT  GD+D+S + EKP GRKP+KT +I   R+ EV+  L+  + E
Sbjct: 417 DVLVMTATPIPRSLALTQYGDMDVSMLDEKPPGRKPVKTAVISTERMQEVVSHLRGAIDE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE +  +  +  ERF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVEESEVMDLTAAEERFKQLRAVLGEGVVGLVHGQMPAAEKDAAMAAFQAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRGE  S+C+LLY  PL
Sbjct: 537 ETKVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGEAASTCLLLYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           SK    RL +L+ TEDGF IAE DL+ R  G+++G  QSG+P+F IA  +    L+ +A+
Sbjct: 597 SKGGQKRLEILRETEDGFRIAETDLEMRGAGDVIGTAQSGLPRFRIADLDRQAGLMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDL+S RGQ+ R+LL+L + ++A + I  G
Sbjct: 657 SDARALLASDPDLSSPRGQAARVLLWLMKQDQAIRLISVG 696


>gi|163741159|ref|ZP_02148551.1| ATP-dependent DNA helicase RecG [Phaeobacter gallaeciensis 2.10]
 gi|161385512|gb|EDQ09889.1| ATP-dependent DNA helicase RecG [Phaeobacter gallaeciensis 2.10]
          Length = 696

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 293/700 (41%), Positives = 423/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T +G+G K +   ++I    +    R  DLL+  P S +DR  R  I
Sbjct: 4   RPEILFPLFAGLETLQGIGPKTAQHFAQI----DIETPR--DLLYSLPYSIVDRRRRDSI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +    + T+   I  H   +  K   Y+I ++D   E  L+FF+ ++  L+    EG 
Sbjct: 58  RGLDYPTVATVEVTIGAHRPAR-NKGGAYRIHVSDAEEEFQLVFFHGRSRYLEAQLPEGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++   ++  + P  E VY L  G+S     K    ALSR
Sbjct: 117 RRVVSGKLELFDGMAQMVHPDHMVPVAEAGDIPEFEPVYHLTHGVSQKTMFKAAQSALSR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EW +   ++K+ +P+  EA    H P         +P R RLAYDEL A Q+ L 
Sbjct: 177 LPELQEWADPSQIRKEDWPTWQEALVAAHTPDGMDALAAEAPGRTRLAYDELFAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + +   G      G +  ++L  +P+ PT +Q  AI +I  DM++  RM R+LQGD
Sbjct: 237 LARLRDRALPGRSSLANGTLQSRVLGALPYRPTGAQARAIDEITADMARDARMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E ++   +   +++EI+TG    
Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTEILARQHLEALRPLAETAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R      +A G   I++GTHA+FQ  + +  L L IVDEQHRFGV+QR++L +K    
Sbjct: 357 RERAAKCAALARGDIQILVGTHAVFQADVAFQDLRLAIVDEQHRFGVRQRMELAEKGKGA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L LT  GD+D+S + EKP GRKP+KT +I   R+ EV+  L+  + E
Sbjct: 417 DVLVMTATPIPRSLALTQYGDMDVSVLDEKPPGRKPVKTAVISTERMQEVVSHLRGAIDE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE +  +  +  ERF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVEESEVMDLTAAEERFKQLRAVLGEGVVGLVHGQMPAAEKDAAMAAFQAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRGE  S+C+LLY  PL
Sbjct: 537 ETKVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGEAASTCLLLYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           SK    RL +L+ TEDGF IAE DL+ R  G+++G  QSG+P+F IA  +    L+ +A+
Sbjct: 597 SKGGQKRLEILRETEDGFRIAETDLEMRGAGDVIGTAQSGLPRFRIADLDRQAGLMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDL+S RGQ+ R+LL+L + ++A + I  G
Sbjct: 657 SDARALLASDPDLSSPRGQAARVLLWLMKQDQAIRLISVG 696


>gi|99081238|ref|YP_613392.1| ATP-dependent DNA helicase RecG [Ruegeria sp. TM1040]
 gi|99037518|gb|ABF64130.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
          Length = 696

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 294/700 (42%), Positives = 430/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T +GVG K +   +++      + T   DLLF  P S +DR  R  I
Sbjct: 4   RPEQLFPLFAELETLQGVGPKIAEHFAQL------HITAPRDLLFSLPYSVVDRRRRETI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +      T+   + +H   +  +   Y+I + D   E  L+FF+ ++  L     EG 
Sbjct: 58  RGLDLPTTATVEVTVGRHRPAR-NRGGAYRIDVTDQETEFQLVFFHGRSRYLTAQLPEGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++    +  + P  E VY L  G++     K +  AL+R
Sbjct: 117 RRVVSGKLELFDGMAQMVHPEHMLPLEEAGDIPDFEPVYHLTHGITQKTMYKAVQSALAR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P L EW++     K+ +P    A +  H P   +D    +PAR RLAYDEL A Q+ L 
Sbjct: 177 VPDLTEWMDPAQKTKQGWPDWHAAISAAHAPATLEDLGAQAPARARLAYDELFAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           + R   +   G      G + +K+L  +P+ PT +Q  AI++I  DM  + RM R+LQGD
Sbjct: 237 IARSVERDLPGRRSVATGTLQRKVLATLPYRPTGAQGRAIEEITADMGSERRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLV  +A+  AVEAGGQ V+MAP  ILA+QH E +K   ++  +++EI+TG    
Sbjct: 297 VGAGKTLVGFMALLVAVEAGGQGVMMAPTEILARQHLEGLKPLAEDAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR  LE +A G  HI++GTHA+FQ  + +  L LVIVDEQHRFGV+QR++L +K    
Sbjct: 357 KDRRAKLESLARGDIHILVGTHAVFQQDVVFDDLRLVIVDEQHRFGVRQRMELAEKGKRA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L LT  GD+++S + EKP GRKPIKT I+   R+ EV++ L+  + E
Sbjct: 417 DVLVMTATPIPRSLALTQYGDMEVSILDEKPPGRKPIKTAILSTERMSEVVDHLRRAIDE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE +  +  +  ERF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVEESEVMDLTAADERFKHLRAVLGEEVVGLVHGQMPPAEKDAAMLAFQEG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRGE  S+C+L+Y PPL
Sbjct: 537 RTRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGEAQSTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    RL VL+ +EDGF+IAE DL+ R  G+++G  QSG+P+F IA  E    L+ IA+
Sbjct: 597 TEGGRKRLEVLRESEDGFVIAETDLQMRGAGDVIGTAQSGLPRFHIADLERQSDLMAIAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ ++T DPDL+S RG++ R LL+L + +EA + I  G
Sbjct: 657 SDARALMTSDPDLSSARGRAARTLLWLLRQDEAIRLISVG 696


>gi|254461597|ref|ZP_05075013.1| ATP-dependent DNA helicase RecG [Rhodobacterales bacterium
           HTCC2083]
 gi|206678186|gb|EDZ42673.1| ATP-dependent DNA helicase RecG [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 696

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 287/700 (41%), Positives = 423/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L++  GVG K +       N G     +  DLLF  P S IDR  +  +
Sbjct: 4   RPEVLFPLFAALTSLEGVGPKTAQ------NMGGLGVEKPRDLLFLLPFSGIDRTLKETV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                   +T+   + QH   +  K   Y+I + D      L+FF+ + + L  +   G+
Sbjct: 58  QGADLPATLTVEVEVGQHRPPR-NKGGAYRIDVIDSQIAFQLVFFHARGDYLSKLLPTGQ 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP +          P  E VY L  G++     K I  AL R
Sbjct: 117 RRVVSGKVELFDGLAQMVHPDHTVRVEDAEQIPSFEPVYPLTAGVTQKPLSKSIASALER 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P L EWI+      K +P    A   +H P+   D   T PARERLAYDE +A Q+ L 
Sbjct: 177 VPQLDEWIDSTQKDLKKWPDWQAAIKTVHAPKSIGDLAQTVPARERLAYDEFMAHQLTLG 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G+  +  G +  ++L  +P+ PT +Q  AI +I  D++   RM R+LQGD
Sbjct: 237 LARANRRRAPGVESHGSGTLRNQVLSGLPYKPTGAQLRAIDEITADLASPQRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A+ A VEAGGQ V+MAP  ILA+QH E ++   ++  +++E++TG    
Sbjct: 297 VGSGKTLVAFMALLAVVEAGGQGVMMAPTEILARQHLEGLQPLAESAGVVLELLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R   L  +   +  I++GTHA+FQ  +++  L L IVDEQHRFGV+QRL+L +K    
Sbjct: 357 REREAKLSALKEKKIQILVGTHAVFQKDVEFSDLRLAIVDEQHRFGVRQRLELGRKGENA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKPAGR+PIKT +I   R++EV+  L+  ++E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPAGRQPIKTALISDERVNEVVSHLRGAINE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP + E + S+  +  ERF +L       +  ++HG+M   +K++ M  F  G
Sbjct: 477 GRQAYWVCPLVGESEVSDLIAAEERFKTLRALLGDDVVRLVHGQMPPSEKDAAMADFVAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +A+I++IE AE FGLAQLHQLRGRVGRG   S+C+L+Y  PL
Sbjct: 537 RVQVLVATTVIEVGVNVPNATIMVIERAESFGLAQLHQLRGRVGRGSAASTCLLMYKAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RL+VL+ TEDGF I+E DL+ R  G+++G  QSG+P+F +A  E   +L+++A+
Sbjct: 597 SENGQKRLTVLRETEDGFQISETDLQMRGAGDLIGTAQSGLPRFRVADLESQTALMDVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP LTS RG++ R+LL+L + ++A + I  G
Sbjct: 657 SDARKLLHDDPKLTSARGKAARVLLWLMEQDQAIRLISVG 696


>gi|92117584|ref|YP_577313.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14]
 gi|91800478|gb|ABE62853.1| ATP-dependent DNA helicase RecG [Nitrobacter hamburgensis X14]
          Length = 699

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 303/701 (43%), Positives = 439/701 (62%), Gaps = 3/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLFA +++  GVG +       ++  G     R IDLLF+ P S IDR  RPK
Sbjct: 1   MRPALLNPLFASVTSLSGVGPRQDKLFRYLL--GRDETPRLIDLLFHLPGSVIDRRARPK 58

Query: 61  ISEISEERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           + +     +VT+   + +H  +   + R P+ +  +D TG++ L +F  +   ++ +   
Sbjct: 59  VRDAVPGTVVTLEVTVDRHRPTPSGRSRAPHLVYASDETGDVVLTYFRAQPGYVEKLLPV 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V+G  +     + +VHP  +   +       I+ VY L  GL++   ++ I  AL
Sbjct: 119 GTKRYVSGTAQIFDGSLQIVHPDRVVDEAGFAKLSGIDPVYPLTEGLALGSLRRAIAMAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            RLP+LPEWI  D+L++ SFP + EA + +H P +  D    S    RLA+DELLAGQ+A
Sbjct: 179 QRLPLLPEWIGPDILRRCSFPPLEEALHRVHVPLELTDILPESRFWSRLAFDELLAGQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G +  +I+  +P++ T SQ+ A   I  D+ Q  RMLR+LQ
Sbjct: 239 LALVRAQLRRPAGSRHAGDGHLRNRIIDALPYALTASQQQAAAAISDDLRQPVRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  EAG Q  +MAP  ILA+QH + +        + V I+TG  
Sbjct: 299 GDVGSGKTVVALLAAAAVTEAGKQTALMAPTEILARQHIKTVAPLADRAGLRVAILTGRE 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+ + R+A+G   +++GTHAL QD + +  L L +VDEQHRFGV++RL LT K  
Sbjct: 359 KGKERREIVARLANGDIDLLVGTHALIQDDVAFKALALAVVDEQHRFGVRERLALTAKGE 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  VL+++ATPIPRTLVLT  GD+D+S++ EKPAGR+PI T  +P +R++EVIE +   +
Sbjct: 419 AVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRALPDSRLNEVIEAVGRAV 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             GK  YWICP +EE    +     +RF+SL   F   + ++HG+M  ++K+ VM  F  
Sbjct: 479 KAGKLVYWICPLVEESDTVDLTDAEQRFDSLKARFGDKVGLVHGKMRGLEKDRVMAQFAA 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               LL+ATTV+EVG+DV  A++++IENAE FGLAQLHQLRGR+GRG E S+C+LLY  P
Sbjct: 539 AEINLLVATTVVEVGVDVPAATVMVIENAERFGLAQLHQLRGRIGRGSEPSTCLLLYREP 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + S  RL V++ T DGF IAEEDLK R EG++LG +QSG+P + IA+ ++H  L+  A
Sbjct: 599 LGEVSAARLRVIRETADGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSDVHAQLITQA 658

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R +A  I+ Q+P LT   G+++R LLYL++ +EA   I AG
Sbjct: 659 RDEALRIMKQNPKLTGAHGEALRCLLYLFERDEALPLIGAG 699


>gi|294677202|ref|YP_003577817.1| ATP-dependent DNA helicase RecG [Rhodobacter capsulatus SB 1003]
 gi|294476022|gb|ADE85410.1| ATP-dependent DNA helicase RecG [Rhodobacter capsulatus SB 1003]
          Length = 697

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 290/701 (41%), Positives = 429/701 (61%), Gaps = 9/701 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP+ L PLFA + T  G+G K +  +       N   TR  D+LF  P + IDR     I
Sbjct: 4   RPAALFPLFAAIETLPGIGAKTAKAME------NLGITRPRDVLFTLPQAVIDRRPVSSI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEG 120
            E++    VT+   +  H + +  +  P ++L+ DG G E  L+FF+ + + L+ +  + 
Sbjct: 58  REVTPPLTVTVEVEVLTHMAAR-NRAGPSRVLVRDGAGAEFALVFFHARGDYLEKLLPKA 116

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            +  V+G+++       MVHP ++    +    P  E VY L  G++  +  K    AL+
Sbjct: 117 GRRLVSGRLELFDGFAQMVHPDHVLPLDEVEKLPRFEPVYPLTAGVTQRVMAKAAEGALT 176

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           RLP LPEWI+  L  ++ +P  A A    H P+   +   T+PAR+RLAYDEL A Q+ L
Sbjct: 177 RLPELPEWIDAALKAREGWPDWAAALRAAHAPQTQAETAVTAPARQRLAYDELFAHQMTL 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L R+Q +   G      G +  K+L+++PF PT +Q  A ++I  DM+  +RM R+LQG
Sbjct: 237 ALARRQARHPKGRITEGTGALTAKVLKSLPFQPTGAQLRASREIAADMATPSRMNRLLQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH+E +        + +E++TG   
Sbjct: 297 DVGAGKTLVAFLALLTAVEAGGQGVLMAPTEILARQHFEGLGTLAAAAGVRMEVLTGRDK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            A R + L  +  G+  I++GTHA+FQ  + +  L LVI+DEQHRFGV QR++L  K   
Sbjct: 357 GAERARKLTDLLEGRIQILLGTHAVFQKDVVFQDLRLVIIDEQHRFGVAQRMELGAKGEM 416

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+MTATPIPR+L L   GD+D+S + EKP GR+P+ T +I   RI EV+  L   ++
Sbjct: 417 ADVLVMTATPIPRSLALAQYGDMDVSLLDEKPPGRQPVTTALISTARIGEVVAHLARAVA 476

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKN 539
           EG++AYW+CP +EE +  +  S  ERF  L       ++ ++HG++   +K++ M  F  
Sbjct: 477 EGRQAYWVCPLVEESERVDLASAEERFAHLRMVLGEGTVGLVHGQLPPAEKDAAMADFVA 536

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C++LY  P
Sbjct: 537 GKTRVLVATTVIEVGVNVPNASIMVIERAETFGLAQLHQLRGRVGRGAAKSTCLMLYQAP 596

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RLS+L+++EDGF IAEEDL  R  G+++G  QSG+P+F IA  E    L+ +A
Sbjct: 597 LSEGGERRLSILRDSEDGFRIAEEDLAMRGAGDVIGTAQSGLPRFRIADLERQAGLMALA 656

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           + DA+ +L  DP L S RGQ+ R+L++L + + A + I  G
Sbjct: 657 QSDARVLLAMDPALESPRGQAARMLMWLTEQDRAIRLIEVG 697


>gi|126462049|ref|YP_001043163.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103713|gb|ABN76391.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides ATCC
           17029]
          Length = 695

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 294/700 (42%), Positives = 423/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +   + +        TR  DLLF  P S +DR  R  I
Sbjct: 3   RPEILFPLFADLETLEGVGPKSAKAFAGL------GVTRPKDLLFLLPHSAVDRSRRASI 56

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            ++      T+   +  H   + +K  PY+I + D   E TL+FF+ + + L  +   G 
Sbjct: 57  RDVLPPVTATVEVTVGAHYPSR-RKGGPYRIAVRDAEAEFTLVFFHARGDYLMKLLPPGE 115

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+I+       MVHP ++    +    P  E VY L  GL+  L  K    AL R
Sbjct: 116 QRIVSGRIEVFDGMAQMVHPDHVLPPEEAAALPACEPVYPLTAGLTQKLVAKAASAALLR 175

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+  L  ++ +P  A A    H P    +   T+ AR RLAYDEL A Q+ L 
Sbjct: 176 LPELAEWIDPGLKAREGWPDWAAAVRAAHAPEAPAEVTPTAAARRRLAYDELFAHQLTLT 235

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G+     G + +++L ++PF+PT +Q  A+ +I  DM+   RM R+LQGD
Sbjct: 236 LARASRRRGRGVASVGTGALQRRVLESLPFAPTAAQTRAVAEIAADMAAPQRMNRLLQGD 295

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+A AVEAGGQ V+MAP  ILA+QH   +    +   I + ++TG    
Sbjct: 296 VGAGKTLVAFLALAIAVEAGGQGVMMAPTEILARQHLASLAPMAEAAGIRLALLTGRDKG 355

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R   L  +A G+  +++GTHA+FQ  + ++ L L IVDEQHRFGV QR++L  K  A 
Sbjct: 356 AERAAKLAALASGEIGVLVGTHAVFQKDVIFHDLRLAIVDEQHRFGVAQRMELGAKGAAA 415

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L S GD+D+S + EKP GR P+KT ++   RIDEV+  L   ++E
Sbjct: 416 DVLVMTATPIPRSLALASYGDMDVSVLDEKPPGRTPVKTALVSCERIDEVVASLAHAVAE 475

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +E+ +  ++ S   RF  L       ++ ++HG+M   +K++ M  F  G
Sbjct: 476 GRQAYWVCPLVEDSEAVDYASAEARFQHLRAALGEGTVGLVHGQMPPAEKDAAMARFVAG 535

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+LLY  PL
Sbjct: 536 ETRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLLYQAPL 595

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +++   RL++L+ TEDGF IAEEDL  R  G+++G  QSG+P+F IA  E   +L+E+A+
Sbjct: 596 AESGQRRLTILRETEDGFRIAEEDLAIRGAGDLIGTAQSGLPRFRIADLERQSALMEVAQ 655

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L S RG++ R+LL+L   + A + +  G
Sbjct: 656 SDARKLLHDDPTLASPRGEAARLLLWLLDQDRAIRLLSVG 695


>gi|312113594|ref|YP_004011190.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218723|gb|ADP70091.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 739

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 286/695 (41%), Positives = 435/695 (62%), Gaps = 4/695 (0%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L APL++ +G+G + +  L+K++        R IDLL++ P+  +DR   P +SE     
Sbjct: 46  LQAPLTSLKGLGPRGAELLTKLL-AKPLTPPRVIDLLWHLPTGTLDRRLTPSVSEALPGG 104

Query: 69  IVTITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           IVT+     +HS+  +   R P +I+  D +G + +++F+     +K +   G    V+G
Sbjct: 105 IVTLVVTPVKHSAPPRSAPRAPVRIVCEDESGALDIVYFHGDRAGIKRLLPLGEPRLVSG 164

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           ++++   R+ M HP Y+   ++    P IE VY L  GL+     ++I +AL+R+P  PE
Sbjct: 165 RVERHGTRLQMTHPDYVLAPNERHRLPAIEPVYPLTLGLTQKFLYRVIGDALARVPEFPE 224

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
           W++  L++ + +P   +A   +H P+   D      ARERLAYDE+ + Q+A+ L+R+  
Sbjct: 225 WLDASLVEAQGWPGFRDALVTLHRPQSHADLALWHKARERLAYDEVSSAQLAIALVRRSH 284

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++  G  +  EG +A K+  ++PF+ T+SQE+A+ +I  DM+   RMLR+LQGDVG+GKT
Sbjct: 285 RQLAGRSLVGEGSLAAKMRASLPFALTRSQETALAEIKADMASSRRMLRLLQGDVGAGKT 344

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +AMA AVEAG Q  +MAP  +LA+QH E +    +   I +  ++G      R + 
Sbjct: 345 VVAALAMANAVEAGAQVALMAPTDVLARQHLETLTPLCEAAGIPLGYLSGREQGRTRGRL 404

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLL 425
           L ++A G+   I GTHALFQ  + +    L IVDEQHRFGV QRL L +KA A    +L+
Sbjct: 405 LGKLASGEIRAICGTHALFQPDVVFRDFGLAIVDEQHRFGVAQRLALQEKARAGDADILV 464

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L+  GD+D+S++TEKPAGRKP+ T  +P  R+++VIE L   L EG + 
Sbjct: 465 MTATPIPRTLQLSLHGDLDVSQLTEKPAGRKPVITRTVPQERLEDVIEGLHRALGEGAQV 524

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           YW+CP +E +   +  +V ER   L + F   + ++HG++   +K++ + +F      +L
Sbjct: 525 YWVCPAVESETARDMTAVTERAAHLRQVFGERVGLVHGKLPGAEKDAAIAAFIARETTIL 584

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG   SSCILLY  PLS+ + 
Sbjct: 585 VATTVIEVGVNVPNATVMIIENAEMFGLAQLHQLRGRVGRGAAQSSCILLYKGPLSETAK 644

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           +RL +L+  +DGF+IAEEDL+ R  GE+LG KQSG P F IA       L+E A    ++
Sbjct: 645 SRLDILRQVDDGFVIAEEDLRLRGGGEVLGAKQSGDPGFRIAGWPEAAPLIERAATAVRY 704

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +L +DP L S +G + R  L L++ +EA + ++AG
Sbjct: 705 LLGRDPYLKSDQGLAARTCLALFERDEAMRLLQAG 739


>gi|90424107|ref|YP_532477.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
 gi|90106121|gb|ABD88158.1| ATP-dependent DNA helicase RecG [Rhodopseudomonas palustris BisB18]
          Length = 699

 Score =  561 bits (1447), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 303/701 (43%), Positives = 438/701 (62%), Gaps = 3/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFAP+++  GVG K       +++   +   R +DLL + P S IDR  RPK
Sbjct: 1   MRPPLLNPLFAPVTSLPGVGPKQDKLFRYLLD--RSETPRLVDLLLHLPVSVIDRRARPK 58

Query: 61  ISEISEERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     +VT+   + +H  +   + R P+ +  +D TG++ L +F  +   ++ +   
Sbjct: 59  IRDAVPGSMVTLEVTVDRHRPAPGGRSRAPHLVYASDDTGDVVLTYFRAQPGYVEKLLPV 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V+G  +     + +VHP  +   +       I+ VY L  GL+V   ++ + +AL
Sbjct: 119 GEKRYVSGTAQMFDGTLQIVHPDRVVDEAGLALLSGIDPVYPLTEGLAVGSLRRAVAQAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            +LP LPEW   +++++  F   AEA   +H P +  D     P   RLAYDELLAGQ+A
Sbjct: 179 LKLPTLPEWTAPEVMRRCGFAPFAEALQRVHRPVELTDILPDGPFWSRLAYDELLAGQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G +  KI+  +P++ T SQ++A   I +D+ Q  RMLR+LQ
Sbjct: 239 LALVRAQLRRPAGTRNAGDGGLRAKIIDALPYALTASQQAAAAAIAEDLRQPVRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  E G QA +MAP  ILA+QH++ +        + V I+TG  
Sbjct: 299 GDVGSGKTVVALLAAAAVAEVGKQAALMAPTEILARQHFKTVAPLAAQAGLRVAILTGRE 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+ L  +A G+ H ++GTHAL QD + +  L L +VDEQHRFGV++RL LT K  
Sbjct: 359 KGKERREILAALASGEIHCLVGTHALIQDDVVFNDLALAVVDEQHRFGVRERLALTNKGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  VL+++ATPIPRTLVL+  GD+D+S++ EKPAGR+PI T  +P +R++EV++ +   L
Sbjct: 419 AVDVLVLSATPIPRTLVLSYFGDMDLSELREKPAGRQPIDTRAVPNSRLNEVMDAVGRAL 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + GK  YWICP +EE +  +     +RF SL   +   + ++HG+M   DK+ VM  F  
Sbjct: 479 AAGKLVYWICPLVEESETVHLTDAEQRFESLKFRYGDRVGLVHGKMRGPDKDRVMAQFAA 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               LL+ATTV+EVG+DV DA+I++IENAE FGLAQLHQLRGR+GRG E S+C+LLY  P
Sbjct: 539 HEIGLLVATTVVEVGVDVPDATIMVIENAERFGLAQLHQLRGRIGRGSESSTCLLLYKEP 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + S  RL V++ T DGF IAEEDLK R EG++LG +QSG+P + IA+PE+H  L+  A
Sbjct: 599 LGEMSAARLRVIRETTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARPEVHAQLISQA 658

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R +A  IL  +P L   RG+++R LLYL++ +EA   I AG
Sbjct: 659 RDEALQILKDNPKLKGERGEALRCLLYLFERDEALPLIGAG 699


>gi|148554435|ref|YP_001262017.1| DEAD/DEAH box helicase domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148499625|gb|ABQ67879.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1]
          Length = 686

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 294/706 (41%), Positives = 431/706 (61%), Gaps = 26/706 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA +   +GVG   +  L K+         R +DLLF+ P+  IDR     
Sbjct: 1   MRPDILNPLFAEVEALKGVGPTLAKPLRKL------ELERVVDLLFHLPTGSIDRKPVDT 54

Query: 61  ISEISEERIVTI----TGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKN 115
           +      RIVT+    T Y +         R P+++   D  G + +L++F       K 
Sbjct: 55  VEAEDAGRIVTVRLVPTSYRASGG------RGPFRVGATDQAGNVVSLVYFGGNPGWAKK 108

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175
           +   G    V+G++      + +VHP ++   ++  + P  E+VY L  G++     ++I
Sbjct: 109 LLPIGEPRIVSGRLDLYGQELQIVHPDHVLSPAEAADLPTRESVYPLSEGITSRRLGQLI 168

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
            + + R P LPEWIE  LLQ + +PS  +A    H    A+D     PAR RLAYDEL A
Sbjct: 169 EQGIERAPELPEWIEPSLLQARGWPSWHDAVVRAHA--DAQD----EPARARLAYDELFA 222

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q+AL+L+R   +K  G+P+  +G++  ++   +P++PT +Q  A+ +I  D+ Q   M 
Sbjct: 223 NQLALMLVRASSRKRRGLPLKGDGRLRDQL--KLPYAPTGAQSRAVAEIEGDLVQPAPMT 280

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVA +A+  AVEAG Q  ++AP  ILA+QH+E + +      + V I+
Sbjct: 281 RLLQGDVGSGKTLVATMALLCAVEAGAQGALLAPTEILARQHFETLGRTLAGLPVNVAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG      R   L  +A G   I++GTHA+FQ+ + Y KL L +VDEQHRFGV QR+ L 
Sbjct: 341 TGREKGKAREATLMALADGSIDILVGTHAIFQEKVGYRKLGLAVVDEQHRFGVAQRMMLQ 400

Query: 416 QKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            KA   PH+L+MTATPIPRTL L+  G++D+S++ E P GR+PI+T +I   R+DEV + 
Sbjct: 401 AKAERPPHLLVMTATPIPRTLTLSHYGEMDVSRLDEMPPGRQPIETRVISGERLDEVAQA 460

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L   L+ G++AYW+CP +EE ++S+  +   R  SL + F   + ++HGRM   +K++VM
Sbjct: 461 LGRHLAAGRQAYWVCPLVEESEQSDLAAAEGRAESLRQWFGDKVGVVHGRMKGPEKDAVM 520

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F+ G   +L+ATTVIEVG+DV +A+++IIE A+ FGLAQLHQLRGRVGRG++ S C+L
Sbjct: 521 AEFQAGRIGVLVATTVIEVGVDVPNATLMIIEGADRFGLAQLHQLRGRVGRGDQRSVCLL 580

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           L    LS+ S  RL++++ T DGF IAEEDL+ R  GEILG +QSG   F +A PE   +
Sbjct: 581 LRGNALSETSRARLALMRETNDGFRIAEEDLRLRGAGEILGTRQSGEAAFRLAGPERTAA 640

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           L+E A +DA+ ++ +D  L S RGQ+ RI LYL++ + A   +RAG
Sbjct: 641 LIEAATQDARLLVDRDGGLDSERGQAARIALYLFERDAAVGLLRAG 686


>gi|84516175|ref|ZP_01003535.1| heme peroxidase [Loktanella vestfoldensis SKA53]
 gi|84509871|gb|EAQ06328.1| heme peroxidase [Loktanella vestfoldensis SKA53]
          Length = 696

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 283/700 (40%), Positives = 427/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLF  L+   GVG K +  +S      +A   +  DLL   P S +DR  R  I
Sbjct: 4   RPEALFPLFGTLTRLDGVGAKTAQVMS------DAGIAKPADLLLTLPVSGVDRRRRASI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            E+    IVT+   +  H   +  K +PY+I + D      L+FF+ + + L+ +   G+
Sbjct: 58  REVIAPCIVTVEVTVGLHLPPK-TKGKPYRITVQDAETSFQLVFFHLRGDYLQKLLPTGQ 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       +VHP ++         P  E VY L  GL+  +  K    AL+ 
Sbjct: 117 RRVVSGKLELFDGIAQIVHPDHVLPPLDADTIPAFEPVYPLHAGLTQKVMWKATRSALAL 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L +WI+     ++ +P  A+A ++ HNP+   D     PAR RLAYDEL+A QI L 
Sbjct: 177 LPDLADWIDPAQKAREGWPDWAQALHLAHNPQSPVDLSPHHPARARLAYDELMAHQITLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G+    +G++ +++L  +P+SPT +Q  AI +I  D++   RM R+LQGD
Sbjct: 237 LARANARRAKGVASAGDGQLQKRVLGALPYSPTGAQTRAIAEIGADLAAPLRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA++A+   VE+ GQ V+MAP  ILA+QHY  ++       + ++++TG    
Sbjct: 297 VGSGKTLVAMMALLQVVESDGQGVMMAPTEILARQHYAGLEPLAAAAGVRLDVLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R   L  +A G   I++GTHA+FQ  + ++ L L ++DEQHRFGV QR++L  K  A 
Sbjct: 357 RDRAAKLAALAQGDIQILVGTHAVFQKDVHFHDLRLAVIDEQHRFGVAQRMELGAKGRAV 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKP++T ++   R+DE++ +L+  +++
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPVQTALVSAARMDEIVAKLRAAVAD 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +     +  +RF  L      + + ++HG+M   +K++ M  F +G
Sbjct: 477 GRQAYWVCPLVEESEIIEMTAAEDRFKRLRAALGDTVVGLVHGQMPVTEKDAAMARFVSG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+L+Y PPL
Sbjct: 537 DTRVLVATTVIEVGVNVPNASIMMIEGAESFGLAQLHQLRGRVGRGAAASTCLLIYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RL +L+ TEDGF I+EEDL  R  G+++G  QSG+P+F IA  E    L+ +A+
Sbjct: 597 SENGRKRLEILRETEDGFRISEEDLAMRGAGDVIGTAQSGLPRFRIADLERQAGLMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDL + RGQ+ R LL+L + + A + I  G
Sbjct: 657 SDARKLLHDDPDLQTPRGQAARALLWLLEQDRAIRLISIG 696


>gi|77463177|ref|YP_352681.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides 2.4.1]
 gi|77387595|gb|ABA78780.1| Haem peroxidase [Rhodobacter sphaeroides 2.4.1]
          Length = 695

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 294/700 (42%), Positives = 423/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +   + +        TR  DLLF  P S +DR  R  I
Sbjct: 3   RPEILFPLFADLETLEGVGPKSAKAFAGL------GVTRPKDLLFLLPHSAVDRSRRSSI 56

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            ++      T+   +  H   + +K  PY+I + D   E TL+FF+ + + L  +   G 
Sbjct: 57  RDVLPPVTATVEVTVGAHYPSR-RKGGPYRIAVRDAEAEFTLVFFHARGDYLMKLLPPGE 115

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+I+       MVHP ++    +    P  E VY L  GL+  L  K    AL R
Sbjct: 116 QRIVSGRIEVFDGMAQMVHPDHVLPPEEAAALPACEPVYPLTAGLTQKLVAKAASAALLR 175

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+  L  ++ +P  A A    H P    +   T+ AR RLAYDEL A Q+ L 
Sbjct: 176 LPELAEWIDPGLKAREGWPDWAAAVRAAHAPEAPAEVTPTAAARRRLAYDELFAHQLTLT 235

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G+     G + +++L ++PF+PT +Q  A+ +I  DM+   RM R+LQGD
Sbjct: 236 LARASRRRGRGVASVGTGALQRRVLESLPFAPTAAQTRAVAEIAADMAAPQRMNRLLQGD 295

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+A AVEAGGQ V+MAP  ILA+QH   +    +   I + ++TG    
Sbjct: 296 VGAGKTLVAFLALAIAVEAGGQGVMMAPTEILARQHLASLAPMAEAAGIRLALLTGRDKG 355

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R   L  +A G+  +++GTHA+FQ  + ++ L L IVDEQHRFGV QR++L  K  A 
Sbjct: 356 AERAAKLAALAAGEIGVLVGTHAVFQKDVIFHDLRLAIVDEQHRFGVAQRMELGAKGAAA 415

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L S GD+D+S + EKP GR P+KT ++   RIDEV+  L   ++E
Sbjct: 416 DVLVMTATPIPRSLALASYGDMDVSVLDEKPPGRTPVKTALVSCERIDEVVASLAHAVAE 475

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +E+ +  ++ S   RF  L       ++ ++HG+M   +K++ M  F  G
Sbjct: 476 GRQAYWVCPLVEDSEAVDYASAEARFQHLRAALGEGTVGLVHGQMPPAEKDAAMARFVAG 535

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+LLY  PL
Sbjct: 536 ETRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLLYQAPL 595

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +++   RL++L+ TEDGF IAEEDL  R  G+++G  QSG+P+F IA  E   +L+E+A+
Sbjct: 596 AESGQRRLTILRETEDGFRIAEEDLAIRGAGDLIGTAQSGLPRFRIADLERQSALMEVAQ 655

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L S RG++ R+LL+L   + A + +  G
Sbjct: 656 SDARKLLHDDPTLASPRGEAARLLLWLLDQDRAIRLLSVG 695


>gi|254437315|ref|ZP_05050809.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
 gi|198252761|gb|EDY77075.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
          Length = 703

 Score =  558 bits (1439), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 287/700 (41%), Positives = 426/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLF  L +  G+G K +  L        A+  +  DLLF  P S +DR  R  I
Sbjct: 11  RPEVLWPLFGGLESLDGIGPKSAQALIA------AHIEKPRDLLFTLPHSGVDRRRRESI 64

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            ++    + T+   I QH+     + RPY++++ D      L+FF    E L+     G+
Sbjct: 65  LDVQAPAVCTVEVTIGQHT-VPSSRGRPYRVMVEDQLTTFQLVFFRSHGEYLRKQLPTGQ 123

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GKI+       MVHP +I    +    PL E VY L   ++     K   + L +
Sbjct: 124 RRVVSGKIELFDGIGQMVHPDHILTPDEAEQIPLFEPVYPLTGTITQKAMFKATTDLLGQ 183

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P L EWI+  L  ++ +P    A    H P  + +   TS AR+RLAYDE+LA Q+ L 
Sbjct: 184 APDLVEWIDPALRAREGWPGWGAALAQAHRPLSSAELSPTSAARQRLAYDEVLAHQLTLA 243

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R Q ++  G     +G    K+L  + F PT +Q  A  +I +DM++ +RM R+LQGD
Sbjct: 244 LARAQARRSKGRMTVGDGAKQAKVLAALGFFPTGAQVRATAEIAEDMAKPHRMNRLLQGD 303

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVAL+A+  AVEAGGQ V+MAP  ILA+QH E ++   +   +++E++TG    
Sbjct: 304 VGSGKTLVALMALLTAVEAGGQGVMMAPTEILARQHLEGLRPLAEGAGVVLELLTGRDKG 363

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR  L  +A G  HI++GTHA+FQ+ + +  L L I+DEQHRFGV QR++L  K T+ 
Sbjct: 364 GERRAKLAALAAGDIHILVGTHAVFQNDVVFADLRLAIIDEQHRFGVAQRMELGAKGTSV 423

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GR P+ T ++  +++D+VI+RL+  +++
Sbjct: 424 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRSPVTTALVATSKMDQVIDRLRAAVAQ 483

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE + S+  +  +RF  L        + ++HG+M   +K++ M  F +G
Sbjct: 484 GRQCYWVCPLVEESEVSDMTAAEDRFKRLRAVLGEDVVGLVHGQMPPANKDAAMRGFVSG 543

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+L+Y  PL
Sbjct: 544 KTKVLVATTVIEVGVNVPNASIMVIERAESFGLAQLHQLRGRVGRGSTKSTCLLMYQAPL 603

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL +++ TEDGF I+EEDL  R  G+++G +QSG+P+F IA  E   +L+ +A+
Sbjct: 604 SEGGRQRLEIMRETEDGFRISEEDLAMRGAGDVIGTEQSGLPRFRIADLEHQTALMALAQ 663

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L S RG++ R LL+L + ++A + I  G
Sbjct: 664 TDARKLLLDDPKLESGRGKAARTLLWLMEQDKAIRLISVG 703


>gi|332558051|ref|ZP_08412373.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides WS8N]
 gi|332275763|gb|EGJ21078.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides WS8N]
          Length = 695

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 294/700 (42%), Positives = 422/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +   + +        TR  DLLF  P S +DR  R  I
Sbjct: 3   RPEILFPLFADLETLEGVGPKSAKAFAGL------GVTRPKDLLFLLPHSAVDRSRRASI 56

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            ++      T+   +  H   + +K  PY+I + D   E TL+FF+ + + L  +   G 
Sbjct: 57  RDVLPPVTATVEVTVGAHYPSR-RKGGPYRIAVRDAGAEFTLVFFHARGDYLMKLLPPGE 115

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+I+       MVHP ++    +    P  E VY L  GL+  L  K    AL R
Sbjct: 116 QRIVSGRIEVFDGMAQMVHPDHVLPPEEAAALPACEPVYPLTAGLTQKLVAKAASAALLR 175

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+  L  ++ +P  A A    H P    +   T+ AR RLAYDEL A Q+ L 
Sbjct: 176 LPELAEWIDPGLKAREGWPDWAAAVRAAHAPEAPAEVTPTAAARRRLAYDELFAHQLTLT 235

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G+     G + +++L  +PF+PT +Q  A+ +I  DM+   RM R+LQGD
Sbjct: 236 LARASRRRGRGVASVGTGALQRRVLERLPFAPTAAQTRAVAEIAADMAAPQRMNRLLQGD 295

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+A AVEAGGQ V+MAP  ILA+QH   +    +   I + ++TG    
Sbjct: 296 VGAGKTLVAFLALAIAVEAGGQGVMMAPTEILARQHLASLAPMAEAAGIRLALLTGRDKG 355

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R   L  +A G+  +++GTHA+FQ  + ++ L L IVDEQHRFGV QR++L  K  A 
Sbjct: 356 AERAAKLAALAAGEIGVLVGTHAVFQKDVVFHDLRLAIVDEQHRFGVAQRMELGAKGAAA 415

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L S GD+D+S + EKP GR P+KT ++   RIDEV+  L   ++E
Sbjct: 416 DVLVMTATPIPRSLALASYGDMDVSVLDEKPPGRTPVKTALVSCERIDEVVASLAHAVAE 475

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +E+ +  ++ S   RF  L       ++ ++HG+M   +K++ M  F  G
Sbjct: 476 GRQAYWVCPLVEDSEAVDYASAEARFQHLRAALGEGTVGLVHGQMPPAEKDAAMARFVAG 535

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+LLY  PL
Sbjct: 536 ETRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLLYQAPL 595

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +++   RL++L+ TEDGF IAEEDL  R  G+++G  QSG+P+F IA  E   +L+E+A+
Sbjct: 596 AESGQRRLTILRETEDGFRIAEEDLAIRGAGDLIGTAQSGLPRFRIADLERQSALMEVAQ 655

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L S RG++ R+LL+L   + A + +  G
Sbjct: 656 SDARKLLHDDPTLASPRGEAARLLLWLLDQDRAIRLLSVG 695


>gi|221639034|ref|YP_002525296.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides KD131]
 gi|221159815|gb|ACM00795.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides KD131]
          Length = 695

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 293/700 (41%), Positives = 421/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +   + +        TR  DLLF  P S +DR  R  I
Sbjct: 3   RPEILFPLFADLETLEGVGPKSAKSFAGL------GVTRPKDLLFLLPHSAVDRSRRASI 56

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            ++      T+   +  H   + +K  PY+I + D   E TL+FF+ + + L  +   G 
Sbjct: 57  RDVLPPVTATVEVTVGAHYPSR-RKGGPYRIAVRDAEAEFTLVFFHARGDYLMKLLPPGE 115

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+I+       MVHP ++    +    P  E VY L  GL+  L  K    AL R
Sbjct: 116 QRIVSGRIEVFDGMAQMVHPDHVLPPEEAAALPACEPVYPLTAGLTQKLVAKAASAALLR 175

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP   EWI+  L  ++ +P  A A    H P    +   T+ AR RLAYDEL A Q+ L 
Sbjct: 176 LPEPAEWIDPGLKAREGWPDWAAAVRAAHAPEAPAEVTPTAAARRRLAYDELFAHQLTLT 235

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G+     G + +++L ++ F+PT +Q  A+ +I  DM+   RM R+LQGD
Sbjct: 236 LARASRRRGRGVASVGTGALQRRVLESLSFAPTTAQTRAVAEIAADMAAPQRMNRLLQGD 295

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+A AVEAGGQ V+MAP  ILA+QH   +    +   I + ++TG    
Sbjct: 296 VGAGKTLVAFLALAIAVEAGGQGVMMAPTEILARQHLASLAPMAEAAGIRLALLTGRDKG 355

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R   L  +A G+  +++GTHA+FQ  + ++ L L IVDEQHRFGV QR++L  K  A 
Sbjct: 356 AERAVKLAALASGEIGVLVGTHAVFQKDVIFHDLRLAIVDEQHRFGVAQRMELGAKGAAA 415

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L S GD+D+S + EKP GR P+KT ++   RIDEV+  L   ++E
Sbjct: 416 DVLVMTATPIPRSLALASYGDMDVSVLDEKPPGRTPVKTALVSCERIDEVVASLAHAVAE 475

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +E+ +  ++ S   RF  L       ++ ++HG+M   +K++ M  F  G
Sbjct: 476 GRQAYWVCPLVEDSEAVDYASAEARFQHLRAALGEGTVGLVHGQMPPAEKDAAMARFVAG 535

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+LLY  PL
Sbjct: 536 ETRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLLYQAPL 595

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++N   RL++L+ TEDGF IAEEDL  R  G+++G  QSG+P+F IA  E   +L+E+A+
Sbjct: 596 AENGQRRLTILRETEDGFRIAEEDLAIRGAGDLIGTAQSGLPRFRIADLERQSALMEVAQ 655

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L S RG++ R+LL+L   + A + +  G
Sbjct: 656 SDARKLLHDDPTLASPRGEAARLLLWLLDQDRAIRLLSVG 695


>gi|119386789|ref|YP_917844.1| DEAD/DEAH box helicase domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119377384|gb|ABL72148.1| DEAD/DEAH box helicase domain protein [Paracoccus denitrificans
           PD1222]
          Length = 697

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 290/701 (41%), Positives = 426/701 (60%), Gaps = 10/701 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA + T  GVG + +   +++         R  DL+   P S I R    ++
Sbjct: 5   RPPALFPLFAGVETLPGVGPRAAEAFAQM------GVMRLRDLVLTLPHSGIRRRRIARL 58

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           +E     IVT+   + +HS     K RP+++  +DG+ ++ L+FF+ + + +++    G 
Sbjct: 59  AEADPPEIVTVAITVQRHSP-PTAKGRPWRVHCSDGSADLLLVFFHPRKDWIESQLPAGA 117

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GKI+       MVHP +I     D   P  E VY L   L+  + +K +  A++R
Sbjct: 118 RRLVSGKIELFDGMAQMVHPDHIGAEGSDPP-PDFEPVYPLSGRLTQGVVQKAVQAAMTR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP   EWI+  L+ ++ +P    A    H P        T PAR RLAYDEL A Q+ L 
Sbjct: 177 LPQAAEWIDPALVAREGWPDWQTALVRAHAPEGPAGLSPTDPARARLAYDELFAHQMTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L+R+  +++ G+    +G +  K+L  +P+ PT +Q  A+ +I  DM+   RM R+LQGD
Sbjct: 237 LLRRDRRRQAGLATQGDGHLRDKVLAGLPWPPTGAQRRAVDEIAADMAAPRRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA  A+  AVEAGGQ V+MAP  ILA+QH+  ++   +   I +E +TG    
Sbjct: 297 VGAGKTLVAFFALLVAVEAGGQGVLMAPTEILARQHFRALEPLARLAGIRLEALTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-- 419
             R   L  +A G+  I++GTHA+ Q S++++ L L IVDEQHRFGV QR++L  K    
Sbjct: 357 DARANILTDLAEGRIVILVGTHAVIQKSVEFHDLRLAIVDEQHRFGVNQRMELGAKGGHQ 416

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P +L+MTATPIPR+L L   GD+D+S + EKPAGR+PI+T +I   R+ EV++ L   L
Sbjct: 417 PPDMLVMTATPIPRSLALAQFGDMDLSVLDEKPAGRQPIRTTVISDARMGEVVDHLARAL 476

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G +AYW+CP +EE +  +  +   RF  L   F   + ++HG+M   ++++ M  F  
Sbjct: 477 DGGARAYWVCPLVEESEAVDLTAAEARFQELRARFGDQVRLVHGQMPADERDAAMADFAA 536

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+ATTVIEVG+DV +A+I++IE AE FGLAQLHQLRGRVGRG   SSC+L+YH P
Sbjct: 537 GRAGILVATTVIEVGVDVPEATIMVIERAESFGLAQLHQLRGRVGRGSGASSCLLMYHEP 596

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RL++L+ TEDGF IAEEDL  R  G+++G  QSG+P+F IA  E    L+ +A
Sbjct: 597 LSETGRRRLTILRETEDGFRIAEEDLVMRGAGDVIGTAQSGLPRFRIADLERQAGLMALA 656

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA+  L +DP + S RGQ++R+LL+L + + A + I AG
Sbjct: 657 RKDAQSFLERDPAMESERGQAVRLLLWLMEQDRAIRLITAG 697


>gi|84500837|ref|ZP_00999072.1| ATP-dependent DNA helicase RecG [Oceanicola batsensis HTCC2597]
 gi|84390904|gb|EAQ03322.1| ATP-dependent DNA helicase RecG [Oceanicola batsensis HTCC2597]
          Length = 694

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 291/700 (41%), Positives = 429/700 (61%), Gaps = 10/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA + T  GVG K +  L++I         R  DLLF  P+  IDR  R  I
Sbjct: 4   RPEILFPLFADVQTLPGVGPKTARHLAQI----GVETPR--DLLFLLPNGTIDRRRRDTI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                   VT+   +  H     +K   Y++++ D   +  L+FF+ + + L  +   G 
Sbjct: 58  RGAPLPGTVTVEVEVGAHRPAA-RKGGAYRVMVRDAQEDFPLVFFHARGDYLGKLLPTGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++    +  + P  E VY L  G++  +  K    ALSR
Sbjct: 117 RRIVSGKLELFDGIAQMVHPDHVLPPDEAGDLPEFEPVYPLTQGVTQRVMGKAAAGALSR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P L EWI+ DL+ ++ +P  ++A    H PR   +      AR RLAYDELLA Q+ L 
Sbjct: 177 APDLAEWIDPDLMAQRGWPGWSDALRAAHEPRD--EISVLDTARTRLAYDELLAHQLTLA 234

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + ++  G     +G + +++L  +P+ PT +Q  A+ +I  DM+ + RM R+LQGD
Sbjct: 235 LARARTRRGKGRVTRGDGGLRERVLAALPYRPTGAQTRALGEISADMAGETRMSRLLQGD 294

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA++A+  AVEAGGQ V+MAP  ILA+QH E +    +   + V I+TG    
Sbjct: 295 VGAGKTLVAVLALLIAVEAGGQGVMMAPTEILARQHLESVTPLAEAAGVRVAILTGRDRG 354

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R   L+ +A G+  I++GTHA+FQ  + +  L L IVDEQHRFGV+QRL+L +K    
Sbjct: 355 ADRAAKLDDLAEGRIDILLGTHAVFQSDVVFRDLRLAIVDEQHRFGVRQRLELGRKGALA 414

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPI+T ++   R+DEV++ L+  +SE
Sbjct: 415 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTALVSTARMDEVVDHLRQAVSE 474

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +  +  +  +RF  L        +A++HG+M   DK++ M  F  G
Sbjct: 475 GRRAYWVCPLVEESETVDLTAAEDRFKHLRAALGDEVVALVHGQMPPADKDAAMADFVAG 534

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRGE  ++C+L+Y  PL
Sbjct: 535 RRQVLVATTVIEVGVNVPEASIMVIERAETFGLAQLHQLRGRVGRGEAQATCLLMYRAPL 594

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+ +  RL++++ TEDGF IAE DL+ R  G+++G  QSG+P+F IA  E    L+ +A+
Sbjct: 595 SEPAEKRLTLMRETEDGFRIAEVDLEMRGAGDMIGTAQSGLPRFRIADLERDTGLMALAQ 654

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L++D  L S RG++ R LL+L   +EA + I  G
Sbjct: 655 SDARALLSRDATLESDRGRAARTLLWLMGQDEAIRLISVG 694


>gi|114767409|ref|ZP_01446211.1| ATP-dependent DNA helicase RecG [Pelagibaca bermudensis HTCC2601]
 gi|114540494|gb|EAU43573.1| ATP-dependent DNA helicase RecG [Roseovarius sp. HTCC2601]
          Length = 696

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 291/700 (41%), Positives = 423/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L  LFA L T  GVG K +  L  +            DLLF  P   IDR  R  +
Sbjct: 4   RPEALWALFAELKTLDGVGPKTAQALEGLDIVAPR------DLLFTLPHGVIDRRPRDSV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            + +   +VT+   + +H     QK RPY+I + D      L+FF+ +++ L  V  EG 
Sbjct: 58  QDANLPGVVTVEVTVGRHMK-PAQKGRPYRIHVEDAQTGFQLVFFHGRSDYLGRVLPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+++       MVHP +I    +  + P  E VY L  G++  L  +   +AL++
Sbjct: 117 RRIVSGRVELFDGMAQMVHPDHILPPEEAASLPAFEPVYPLTGGVTQKLMARASADALAK 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P L EWI+  L  ++ +P    A    H P  A      +PAR RLAYDELLA Q+ L 
Sbjct: 177 APELDEWIDGPLKAREGWPDWRAALEAAHAPYGADALSPAAPARARLAYDELLAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   +K  G     +G + +K+L  +PF PT +Q  A+ +I +DM+   RM R+LQGD
Sbjct: 237 LARVHRRKGRGRSTRGDGALRRKVLAALPFRPTGAQMRAMDEIAEDMAGGERMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E ++   ++  ++VEI+TG    
Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTEILARQHLEGLRPLAESAGVVVEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           + R+  L  +  G   I++GTHA+FQ  + +  L L IVDEQHRFGV+QRL+L +K    
Sbjct: 357 SERKAKLAALERGDIQILVGTHAVFQADVAFRDLRLAIVDEQHRFGVRQRLELGRKGAGA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPI+T ++   R+ EV+E L   ++E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTALVSAERMQEVVEHLVQAVAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +  +  +  ERF  L        + ++HG+M   +K++ M  F  G
Sbjct: 477 GRQAYWVCPLVEESEAVDLTAAEERFKRLRAVLGEGVVGLVHGQMPPAEKDAAMARFVAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +A+I++IE AE FGLAQLHQLRGRVGRGE  S+C+L+Y PPL
Sbjct: 537 ETQVLVATTVIEVGVNVPNATIMVIERAEWFGLAQLHQLRGRVGRGEGDSTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            +    RL  L+ TEDGF I+E DL+ R  G+++G  QSG+P+F +A  E    L+ +A+
Sbjct: 597 GEAGMKRLKTLRETEDGFRISEVDLEMRGAGDLIGTAQSGLPRFKVADLEHQSGLMAMAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L S RG++ ++LL+L + +EA + I  G
Sbjct: 657 SDARKLLADDPTLESSRGRAAKMLLWLMRQDEAIRLISVG 696


>gi|167646874|ref|YP_001684537.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167349304|gb|ABZ72039.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 691

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 293/703 (41%), Positives = 416/703 (59%), Gaps = 15/703 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLF P+ST +GVG + +  + ++            D+LF  P+S I R     
Sbjct: 1   MRPEILFPLFTPVSTLKGVGPRVAPLVERLAG------PIVRDVLFTPPTSLIRRTATTS 54

Query: 61  ISEIS---EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVF 117
              +    +  +VTI  ++    + Q     P++I   D  G +TL +F      L+   
Sbjct: 55  DRAVDGQVQTFLVTIDAHLPPQRAGQ-----PWRIRAWDEHGFVTLTWFKGYGSHLERAH 109

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G +  V+GK+++  + I + HP Y+    +    P +E VY    GL    F+K   E
Sbjct: 110 PVGARRAVSGKVERFGSEIQVAHPDYLLEAERAAEIPPVEPVYPATAGLPSRTFRKFAQE 169

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           AL R   LPEW +   L ++ FP+  EA  ++HNPR   D    S AR RLAYDELLA Q
Sbjct: 170 ALERAAPLPEWQDPAWLTREGFPAWREALALLHNPRAEIDLSPMSIARRRLAYDELLAHQ 229

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL   RK  K+    P  V G ++    + +PF  T +Q  A+ ++  DM+   RM R+
Sbjct: 230 LALA-QRKAGKRSHPAPRIVAGPLSDAAEKALPFKLTGAQIRALSEVRGDMASGERMGRL 288

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VA++AMA A  +G Q+ +MAP  ILA+QHYE +    +   + V ++TG
Sbjct: 289 LQGDVGSGKTVVAMLAMADAASSGLQSALMAPTEILARQHYETLAPPLEAQGLAVILLTG 348

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               + R   L ++A G A + +GTHALFQD + +  L L I+DEQHRFGV +R +L  K
Sbjct: 349 RDKGSARASKLAKLADGSAAVAVGTHALFQDDVVFKGLGLTIIDEQHRFGVNERKRLQDK 408

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
               H++ M+ATPIPRTL LT  GD+D+S+I EKP GR P+ T   P  RI E+I RLK 
Sbjct: 409 GEGAHLVAMSATPIPRTLELTVFGDLDVSRIDEKPPGRTPVATRAAPTPRIPEIIARLKA 468

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
               G +A+WICP + E  + + R    R  SL E    S+ ++HG+M   +K++VM  F
Sbjct: 469 AAQAGAQAFWICPLVSESDKIDLRDAERRAASLREAIGPSVGLVHGQMPAAEKDAVMADF 528

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G   +L+ATTV+EVG++V +ASI++IE+A+ FGLAQLHQLRGRVGRG   SSC+LLY 
Sbjct: 529 VDGKVSVLVATTVVEVGVNVPNASIMVIEHADRFGLAQLHQLRGRVGRGSRESSCVLLYD 588

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS+ +  RL +L+ ++DGF IAE+DL+ R  G+ LG+KQSG P + +A P  H  L+ 
Sbjct: 589 PPLSEVAQQRLDILRRSDDGFEIAEKDLELRGGGDPLGLKQSGFPAYKLADPVAHRDLIA 648

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +A  DA+ IL +DPDLTS RGQ++R L  L+ +  A     AG
Sbjct: 649 VAADDARLILARDPDLTSPRGQAVRTLQELFDWKAASPLNDAG 691


>gi|114327498|ref|YP_744655.1| ATP-dependent DNA helicase recG [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315672|gb|ABI61732.1| ATP-dependent DNA helicase recG [Granulibacter bethesdensis
           CGDNIH1]
          Length = 685

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 291/693 (41%), Positives = 426/693 (61%), Gaps = 17/693 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LFAPL++  G+G   +  L K   CG     R +DLLF+ P  F  R     + E     
Sbjct: 9   LFAPLTSLPGIGPTLAPLLEK--ACGG---PRVLDLLFHLPDGFTRRTAISALREAQPGT 63

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTG 127
           +VTI   +  H +    +R+P+++ + D  G E  ++FF R      +    G ++ V+G
Sbjct: 64  VVTIALDVVAHHA-PATRRQPWRVKVMDREGCEADIVFFSRAR---LDRLPIGTRVAVSG 119

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           K  +   +I   HP +I   +Q    P IE V+ L  GL     ++ + EAL  LP  PE
Sbjct: 120 KADRFGEKITFPHPDHIVPITQMDTIPAIEPVWPLTAGLFPGQIRRALKEALGCLPDFPE 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
           WI+  LL KKS+P    A + +H P +  D    SP  +RLAYDEL A Q+A+  M+++ 
Sbjct: 180 WIDPHLLAKKSWPCFGAALHALHQPEQIPD---QSP-HDRLAYDELFAHQLAMAWMKRRE 235

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++  G  ++ +  + ++ L       T SQ  A+ +I  DM+   RMLR+LQGDVG+GKT
Sbjct: 236 RQRPGRSLSGDNTLREEALIRFGKPMTGSQLQALSEIDGDMAAPRRMLRLLQGDVGAGKT 295

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           LVAL+AM  AVEAG QA +MAP  +LAQQHY  + K +    + V ++TG++    RR  
Sbjct: 296 LVALMAMLRAVEAGTQAAMMAPTELLAQQHYRTLSKLSP---VQVGLLTGSVKGVARRNL 352

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  I  G+  II+GTHALFQDS+QY  L L ++DEQHRFGV+QR  L  K +   VL+MT
Sbjct: 353 LLGIQAGRIKIIVGTHALFQDSVQYRDLGLAVIDEQHRFGVEQRGMLGSKGSRTDVLVMT 412

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL+LT  G++D+S++TEKPAGR+PI+T + P++++D VI+ +   L +G + YW
Sbjct: 413 ATPIPRTLLLTQWGEMDVSRLTEKPAGRQPIRTTLHPLSKLDAVIDGIGRALDKGDRVYW 472

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +CP + E   S+  +  ERF  L   F   + + HG+    ++E+ +  F  G   LL+A
Sbjct: 473 VCPLVSESAVSDMAAAEERFAVLRARFGEKVGLAHGQQDSAEREAALSEFAAGRTSLLVA 532

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTV+EVG+DV +ASI+++E+AE FGLAQLHQLRGRVGRG   S C+LL+   +S+ +  R
Sbjct: 533 TTVVEVGVDVPEASIMVVEHAERFGLAQLHQLRGRVGRGAAASFCLLLHEDGMSETARRR 592

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L++L++TEDGFLIA+ED + R  G++LG +QSG+P + +A  + H +LL IA +DA ++L
Sbjct: 593 LTLLRDTEDGFLIADEDFRLRGGGDLLGKRQSGLPSWRLADTDRHAALLRIASRDAAYLL 652

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            QDP LT  RG + R LL L+   +A + + AG
Sbjct: 653 DQDPGLTGPRGLAARSLLRLFGRGDALRNLDAG 685


>gi|83951900|ref|ZP_00960632.1| ATP-dependent DNA helicase RecG [Roseovarius nubinhibens ISM]
 gi|83836906|gb|EAP76203.1| ATP-dependent DNA helicase RecG [Roseovarius nubinhibens ISM]
          Length = 696

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 292/700 (41%), Positives = 428/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA + T  GVG K +     +        +R  DL+F  P S IDR  R  I
Sbjct: 4   RPEILFPLFAGVETLPGVGPKLAQAFEGL------GVSRPRDLIFTLPHSGIDRRRRDTI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                  +VT+   +  H + Q ++  PY++ + D      L+FF+ + E L+ +  EG 
Sbjct: 58  RGAELPGVVTVEVEVGPHRAPQ-RRGGPYRVTVEDSETSFQLVFFHARDEYLRRLLPEGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+++       MVHP ++    +    P  E VY L  G+S  +  K +  AL+R
Sbjct: 117 RRVVSGRVELFDGIAQMVHPDHMLPVEETGEIPDFEPVYPLTHGISQRVMAKAVAGALTR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +  L EWI+     K  +P   +A    H P+       + PARERLAYDE LA Q+ L 
Sbjct: 177 VTALEEWIDPGQKAKAGWPDWNDAVIDAHGPQDRGGLAPSHPARERLAYDEFLAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + +   G     +G +  K+L  +P+ PT +Q  A+ DI  DM++  RM R+LQGD
Sbjct: 237 LARAKRRAAKGRESLGDGHLRDKVLGALPYRPTNAQTRAVTDIAGDMARPERMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA++A+  AVEAGGQ V+MAP  ILA+QH   +    +   + +EI+TG    
Sbjct: 297 VGAGKTLVAMLALLIAVEAGGQGVMMAPTEILARQHLAGLAPLAEAAGVRIEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R + L  +A G+  I++GTHA+FQ  +Q+  L L +VDEQHRFGV+QRL+L +K    
Sbjct: 357 AARGEKLRALAAGEIGILVGTHAVFQADVQFADLRLAVVDEQHRFGVRQRLELGRKGVLA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPIKT ++ + R++EV+  L+  ++E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSILDEKPPGRKPIKTALVNMARMEEVVAHLRRAIAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +  +  S  ERF +L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQAYWVCPLVEESEAVDLSSADERFKALRAVLGEGHVGLVHGQMPPEEKDAAMAAFQAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG+DV +ASI++IE AE+FGLAQLHQLRGRVGRGE  S+C+LLY  PL
Sbjct: 537 ETAVLVATTVIEVGVDVPNASIMVIERAEYFGLAQLHQLRGRVGRGEAESTCLLLYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL+ ++ TEDGF IAE DL+ R  G+++G  QSG+P+F +A  E    L+ +A+
Sbjct: 597 SETGEKRLTTMRETEDGFRIAEVDLEMRGAGDVIGTAQSGLPRFRVADLEHQAGLMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDLT  RG++ R+LL+L + ++A   I+ G
Sbjct: 657 SDARKLLHDDPDLTGERGRAARVLLWLMEQDQAIGLIKVG 696


>gi|16125686|ref|NP_420250.1| ATP-dependent DNA helicase RecG [Caulobacter crescentus CB15]
 gi|221234441|ref|YP_002516877.1| ATP-dependent DNA helicase recG [Caulobacter crescentus NA1000]
 gi|13422802|gb|AAK23418.1| ATP-dependent DNA helicase RecG [Caulobacter crescentus CB15]
 gi|220963613|gb|ACL94969.1| ATP-dependent DNA helicase recG [Caulobacter crescentus NA1000]
          Length = 698

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 294/712 (41%), Positives = 424/712 (59%), Gaps = 26/712 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLF  +ST +GVG + +  + K+            D+LF  PS  I R     
Sbjct: 1   MRPEILFPLFTSVSTLKGVGPRVAPLVEKLAG------PIVRDVLFTAPSGLI-RRTTTT 53

Query: 61  ISEISEER----IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNV 116
           + +  E +    IVTI G+   H   Q     P+KI   DGTG +TL++F      L+  
Sbjct: 54  VDQAVENQVQTFIVTIDGHQPPHRLGQ-----PWKIRAWDGTGFLTLVWFKGHGPHLERQ 108

Query: 117 FFEGRKITVTGKIKK---LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK 173
             +G +  V+GK+++     + + + HP YI    +  + PL+E VY    GL    F+K
Sbjct: 109 HPKGARRAVSGKVERPEVFASELQIAHPDYIVAEDKAGDIPLVETVYPATHGLPSRTFRK 168

Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
           + +EAL+R P L EW +   ++++  PS  +A   +H P    D    S  R RLAYDEL
Sbjct: 169 LALEALARAPDLAEWQDAAWIEREKLPSWRDALAALHAPASEADLSPLSRPRRRLAYDEL 228

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA Q+AL   RK  ++    P    G +++   + +PF  T++Q  A+ +I  D++   R
Sbjct: 229 LAHQLALA-QRKAARRSHPGPRIPAGPLSEAAEKALPFKLTRAQIRALSEIRGDLASGER 287

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA++AMA A  AG Q+ +MAP  ILA+QH+E I    +   + V 
Sbjct: 288 MSRLLQGDVGSGKTVVAMLAMADAASAGFQSALMAPTEILARQHFETIAAPLEALDLSVI 347

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG    A R   L  +A G  HI +GTHALFQD + +  L L I+DEQHRFGV +R +
Sbjct: 348 LLTGRDKGAGRAAKLAGLAEGAHHIAVGTHALFQDDVGFRALALTIIDEQHRFGVNERRR 407

Query: 414 LTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           L +K  A      H+L M+ATPIPRTL LT  GD+D+S+I EKP GR P+ T  +P  R+
Sbjct: 408 LQEKGPANVDWGVHLLAMSATPIPRTLELTVFGDLDVSRIDEKPPGRTPVATRAVPTPRV 467

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
            E+IERL+V +S G +A+WICP + E  +   R+  +R   L  H    + ++HG+M   
Sbjct: 468 PEIIERLRVAISGGAQAFWICPLVSESDKVYLRAAEDRAADLARHL-PGVGLVHGQMPPA 526

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +K++VM  F +G   +L+ATTV+EVG++V +ASI++IE+A+ FGLAQLHQLRGRVGRG  
Sbjct: 527 EKDAVMQRFVDGEVNVLVATTVVEVGVNVPNASIMVIEHADRFGLAQLHQLRGRVGRGTR 586

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            S+C+LLY PPLS+ +  RL +L+ ++DGF IAE+DL+ R  G+ LG+KQSG P + +A 
Sbjct: 587 ESACVLLYDPPLSEVAQQRLDILRRSDDGFEIAEKDLELRGGGDPLGLKQSGFPAYRLAD 646

Query: 649 PELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           P  H  L+ +A  DA+ IL +D  LTS RGQ++R L  L+ +        AG
Sbjct: 647 PVAHRDLIAVAADDARLILARDLALTSPRGQALRTLQELFDWTPTSVLNEAG 698


>gi|149186682|ref|ZP_01864993.1| DNA helicase [Erythrobacter sp. SD-21]
 gi|148829590|gb|EDL48030.1| DNA helicase [Erythrobacter sp. SD-21]
          Length = 687

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 289/703 (41%), Positives = 421/703 (59%), Gaps = 19/703 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA   T  GVG K    L ++        TR  DL ++ P  F+ R     
Sbjct: 1   MRPDLLNPLFAETETLDGVGPKLKKPLGRLAL------TRIKDLAYHLPERFVTRRAVEN 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFE 119
           + E  E   + +   +++H   +   R PY++L  D  G  I+L +F R +   K     
Sbjct: 55  VDEAGEGEQIFLKLTVTEHRGGR-SPRAPYRVLAQDAVGNVISLTYFGRASYTAKKQLPV 113

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V GK+++  + + +VHP ++     D    L E VY L  GL+      ++ +AL
Sbjct: 114 GETRWVAGKLERYGDMLQIVHPDHVVEEGGDTLQRLCEPVYRLSEGLTQPRIGGLVDQAL 173

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           ++LP LPEWIE     K  +P+  EA    H   KA+D      AR+RLAYDELLA  +A
Sbjct: 174 AKLPELPEWIEPTQFDKADWPAWREALKRAH---KAED----KAARDRLAYDELLANGLA 226

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+L+R   +K  G P+  +G    K+  ++PF  T +Q+ +I +I  DM+Q+  MLR+LQ
Sbjct: 227 LMLVRADNRKRKGQPLQGDGSYRGKL--DLPFPLTGAQKRSIGEIEGDMAQEAPMLRLLQ 284

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VAL AM  AVEAG QA ++AP  ILA+QHYE +++  + T   V ++TG  
Sbjct: 285 GDVGAGKTVVALEAMLIAVEAGAQAALLAPTEILARQHYESLRRMAEPTGAEVALLTGRD 344

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   L  +  G   I++GTHA+FQD + Y  L +V++DEQHRFGV QRL L  K  
Sbjct: 345 KGKAREGTLMGLLDGSIDIVVGTHAIFQDKVAYRNLAMVVIDEQHRFGVGQRLMLASKGR 404

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            APHVL MTATPIPRTL L   G++D+SK+ E P GR+ I TV++  ++I  ++ERL   
Sbjct: 405 RAPHVLAMTATPIPRTLTLAQYGELDVSKLDELPPGRQAIDTVVMGQDKIPTLVERLAAQ 464

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVE-RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
             +G++A+W+CP + E       +  E R+ SL E F   + ++HG+++   K++ M+ F
Sbjct: 465 FEQGRQAFWVCPMVREMDGPEEIAAAEARYASLKERFGDDVVMVHGQLAPEQKDAAMERF 524

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G  +LL+ATTVIEVG+DV +A++++IE AE FGLAQLHQLRGRVGRG E S C+LL+ 
Sbjct: 525 ARGDARLLVATTVIEVGVDVPNATLMVIEQAERFGLAQLHQLRGRVGRGSEKSFCVLLHG 584

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             LS+ +  RL++++ ++DGFL+AEEDLK R  GE+LG +QSG   F +A  E    LL 
Sbjct: 585 ETLSETAQKRLALMRESQDGFLLAEEDLKLRGGGELLGTRQSGDTPFTVASFEQITELLP 644

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            A  DA+ ++ +D  L   R ++ R+LLYL++ +   + +R G
Sbjct: 645 KAHDDARLLMERDGGLEGARAEAARVLLYLFERDFGVKTLRGG 687


>gi|295689317|ref|YP_003593010.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295431220|gb|ADG10392.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 698

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 284/708 (40%), Positives = 416/708 (58%), Gaps = 18/708 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLF  +ST +GVG + +  L K+            D+LF  P+  I R     
Sbjct: 1   MRPEILFPLFTSVSTLKGVGPRVAPLLEKLAG------PIVRDVLFTAPTGLIRRSVT-T 53

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           + +  E ++ T    I  H     +  +P+KI   DGTG +TL++F      L+    +G
Sbjct: 54  VDQAVEGQVQTFVVTIDTHQPPH-RLGQPWKIRAWDGTGFLTLIWFKGHGPHLERQHPKG 112

Query: 121 RKITVTGKIKK---LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
            +  V+GK+++     + + + HP YI    +  + P +E VY    GL    F+K  +E
Sbjct: 113 ARRAVSGKVERPEGFASELQIAHPDYIVAEERAGDIPDVETVYPATAGLPSRTFRKFALE 172

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           AL R P LPEW +    +++  P   EA   +H P    D    +  R RLAYDELLA Q
Sbjct: 173 ALERAPDLPEWQDAAWRERERLPGWREALAALHAPASEADLSPLARPRRRLAYDELLAHQ 232

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +A+   RK  ++    P+   G +++   + +PF  T +Q  ++ +I  D++   RM R+
Sbjct: 233 LAMA-QRKASRRAHPGPVIRGGPLSEAAEKALPFKLTSAQIRSLSEIRGDLASGERMSRL 291

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VA++AMA A  AG Q+ +MAP  ILA+QH+E I        + V ++TG
Sbjct: 292 LQGDVGSGKTVVAMLAMADAASAGLQSALMAPTEILARQHFETIAAPLAALGLSVILLTG 351

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               A R   L  +A G   I +GTHALFQD + +  L L I+DEQHRFGV +R +L  K
Sbjct: 352 RDKGAGRAAKLAGLADGAHQIAVGTHALFQDDVAFKALALTIIDEQHRFGVNERRRLQDK 411

Query: 418 ATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
                    H+L M+ATPIPRTL LT  GD+D+S+I EKP GR P+ T   P  R+ E++
Sbjct: 412 GPPDVDWGVHLLAMSATPIPRTLELTVFGDLDVSRIDEKPPGRTPVATRAAPTPRVPEIV 471

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           ERL+  ++ G +A+WICP + E ++ + R+  +R   L  H    + ++HG+M   +K++
Sbjct: 472 ERLRAAIAGGAQAFWICPLVSESEKVDLRAAEDRAADLARHL-PGVGLVHGQMPPAEKDA 530

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM  F +G   +L+ATTV+EVG++V +ASI++IE+A+ FGLAQLHQLRGRVGRG   SSC
Sbjct: 531 VMQRFVDGEVSVLVATTVVEVGVNVPNASIMVIEHADRFGLAQLHQLRGRVGRGTRESSC 590

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY PPLS+ +  RL +L+ ++DGF IAE DL+ R  G+ LG+KQSG P + +A P  H
Sbjct: 591 VLLYDPPLSEVAQKRLDILRRSDDGFEIAERDLELRGGGDPLGLKQSGFPAYRLADPVAH 650

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             L+ +A  DA+ IL +DP+LTS RGQ++R+L  L+ +        AG
Sbjct: 651 RDLIAVAADDARLILARDPELTSPRGQALRMLQELFDWKPVSALNEAG 698


>gi|83593063|ref|YP_426815.1| ATP-dependent DNA helicase RecG [Rhodospirillum rubrum ATCC 11170]
 gi|83575977|gb|ABC22528.1| ATP-dependent DNA helicase RecG [Rhodospirillum rubrum ATCC 11170]
          Length = 703

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 296/708 (41%), Positives = 445/708 (62%), Gaps = 13/708 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPS L+PLF PL++ +G GK  +  ++++I        + +DLL++ PS  +DR + P 
Sbjct: 1   MRPSLLDPLFRPLTSLKGAGKTMAPLIARLIGG-----DKVVDLLWHLPSGLVDRRFSPL 55

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+E  +  +VT+T  +  H     +   PY+++  D +G +TL+FF+ +   L ++   G
Sbjct: 56  IAEAPDGVVVTLTVVVEAHQEPPPRSPSPYRVVCRDASGFVTLVFFHGRARYLNDLLPVG 115

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               ++GK+++      +VHP ++   ++      +E VY L  G++  +  ++I +AL 
Sbjct: 116 ETRVISGKVERFGGAPQIVHPTHVVPLAEAEAVCRVEPVYPLSGGVAGKVLARLIAQALD 175

Query: 181 RLP---VLP-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            +P     P EWI+  L  ++ +P   +A   +H P +A+D     PAR RLAYDELLA 
Sbjct: 176 DIPDPAAWPDEWIDAPLKAREGWPGWIDALRAVHAPEEAEDLRPDHPARRRLAYDELLAT 235

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q+ALLL+R+  +   G PI   G +  K+L  +PF+ T +Q  ++ +I  DM+   RMLR
Sbjct: 236 QLALLLVRRAARTVRGRPIVGTGALRAKVLAALPFALTGAQSRSLAEIDGDMASPARMLR 295

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VAL+ M  AVEAG QA +MAP  ILA+QH E +     +  + + ++T
Sbjct: 296 LLQGDVGSGKTVVALLTMLTAVEAGAQAALMAPTEILARQHIETLAPLCASAGVRLGLLT 355

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G      R   LE +A G+  I++GTHALFQD + +  L +V+VDEQHRFGV QRL L+ 
Sbjct: 356 GRDKGRARAALLEALAAGEIDILVGTHALFQDDVVFAALAVVVVDEQHRFGVHQRLALSD 415

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K  A  VL+MTATPIPRTL LT  GD+DIS++ EKP GR P  T ++PI+R+D+VI  + 
Sbjct: 416 KGRAVDVLVMTATPIPRTLTLTHYGDMDISRLDEKPPGRLPADTRVLPIDRLDDVIAAVA 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVER----FNSLHEHFTSSIAIIHGRMSDIDKES 532
             +  G K YW+CP IE+ +  +  + V+R     + L       + ++HGRM   +K++
Sbjct: 476 RAIDGGAKVYWVCPLIEDSETGDMAAAVDRQALLADRLGPRLGPRVGLVHGRMKPGEKDA 535

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM++F      LL+ATTVIEVG++V  A++++IE+AE FGLAQLHQLRGR+GRG   S+C
Sbjct: 536 VMEAFSGNGLDLLVATTVIEVGVNVPSATVMVIEHAERFGLAQLHQLRGRIGRGGGRSTC 595

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY PPL + +  RL  ++ T+DGF IAEEDL+ R  GE+LG +QSG+P F +  P L 
Sbjct: 596 LLLYAPPLGETARARLETMRRTDDGFEIAEEDLRLRGAGEVLGTRQSGLPVFRLIDPLLA 655

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           + LL IARK A+ I+  DPDL    G ++R+LLYL++ + A + +R+G
Sbjct: 656 EDLLAIARKQAEVIVETDPDLAGPHGAALRVLLYLFERDAAVRTLRSG 703


>gi|326387811|ref|ZP_08209417.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207857|gb|EGD58668.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 690

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 285/704 (40%), Positives = 434/704 (61%), Gaps = 23/704 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA   + +GVG   +  L K+        TR  DL+++ P  F+ R    +
Sbjct: 6   MRPDLLNPLFAETESLKGVGPGLARPLEKL------GLTRVRDLVYHLPDRFVSRRAVTR 59

Query: 61  ISE--ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVF 117
           + E  I E  ++ +T  + +H +     R P+++L  D  G+I TL +F R +   + + 
Sbjct: 60  LDEAGIGENIVIGLT--VREHRASA--GRGPFRVLAEDDAGDIVTLTYFGRASYTARKLL 115

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G +  + G++ +      +VHP ++  +S ++   L E VY L  GL+      ++ +
Sbjct: 116 PVGERRWIAGRLDQFGQMRQIVHPDHVAQDSGELTAHLTEPVYPLSEGLTQGRIAGLVHQ 175

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           AL  LP LPEW+E  LL ++++P+ AEA    H    AK       AR+RLAYDELLA  
Sbjct: 176 ALGHLPHLPEWVEPGLLAREAWPNWAEAVAEAHKGENAK-------ARDRLAYDELLANS 228

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL+L+R   +   G+P++ +G + +++  ++PFS T +Q+ AI ++  D++Q   MLR+
Sbjct: 229 LALMLVRASNRTRRGLPLHGDGHLRKRL--DLPFSLTGAQQRAIAEVEADLAQGAPMLRL 286

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT VAL AM  AVEAG QA ++AP  ILA+QH E +++    T + + ++TG
Sbjct: 287 LQGDVGSGKTAVALHAMLIAVEAGAQAAMLAPTEILARQHAETLRRMAAGTGVTIALLTG 346

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 R   L  +  G   I +GTHA+FQ+++ Y  L LV++DEQHRFGV QRL LTQK
Sbjct: 347 RDKGKAREATLMGLLDGSIQICVGTHAIFQEAVAYRNLALVVIDEQHRFGVGQRLMLTQK 406

Query: 418 A-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           A T  H L MTATPIPRTL L   G++D+S++ E P GR+PI T ++  +R++EVI  + 
Sbjct: 407 ARTTAHCLAMTATPIPRTLTLAQYGEMDVSRLDEMPPGRQPIDTRVVSTDRVEEVIAGIG 466

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             L++G +AYW+CP + E++  +  +   R   L E F   + ++HG++    K++ M+ 
Sbjct: 467 RHLAKGGQAYWVCPMVREQETEDLAAAEARHALLKERFGDGVELVHGQLRPEAKDAAMER 526

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   LL+ATTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG   S+C+LL 
Sbjct: 527 FARGEAGLLVATTVIEVGVDVPNATLMVIEHAERFGLAQLHQLRGRVGRGTGRSTCLLLR 586

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
              LS+    RL++++ T+DGFL+AEEDL+ R  GE+LG +QSG   F +A  +    LL
Sbjct: 587 GEALSETGRERLALMRETQDGFLLAEEDLRLRGGGELLGTRQSGDTPFRVASFDQIARLL 646

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            +A  DA+ ++ +D  L+S RG++ R+LLYL++ +   Q +R G
Sbjct: 647 PLAHDDARLLMERDGGLSSPRGEAARVLLYLFERDWGVQLLRGG 690


>gi|304319852|ref|YP_003853495.1| ATP-dependent DNA helicase [Parvularcula bermudensis HTCC2503]
 gi|303298755|gb|ADM08354.1| ATP-dependent DNA helicase [Parvularcula bermudensis HTCC2503]
          Length = 701

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 290/709 (40%), Positives = 415/709 (58%), Gaps = 17/709 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LN  FA L++  GVG K +  L K+         R IDLL   P+  IDR YRPK
Sbjct: 1   MRPAELNRYFADLTSLPGVGPKTAALLQKVAG------PRIIDLLLTGPTGLIDRSYRPK 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           + E    R+ T+T  ++ H+     +R  PY+IL  D TG +TL+FF  K E L+  +  
Sbjct: 55  VGEAILGRVATVTVTVTAHTPPPTGRRLIPYRILTADDTGYLTLVFFRAKREWLETRYPV 114

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G  +TV+G I        M HP Y+     D   P +E VY L  GL++  +++ +  AL
Sbjct: 115 GTSLTVSGTIDDYGGARQMTHPDYMLRPDHDETLPEVEPVYPLTAGLTLPTYRRAVAAAL 174

Query: 180 SRLPVLPEW----IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
            R+  L EW    +E D       P  A+A   +H P+  +D   +SPAR RLA DELL+
Sbjct: 175 RRVAPLAEWRAPPLEGD--GAPPLPDWADAVRTLHAPQSERDLSPSSPARRRLAADELLS 232

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q+AL L+R + ++  G  +  +  + +     +PF  T +Q+ A+ +I+ DM    RM+
Sbjct: 233 NQLALSLIRHRRQQIAGRALPGDPTLMEGGRAALPFRLTAAQDQALAEIVADMQSPARMV 292

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT+VA  A+  A+ +G Q  +MAP  ILA QH E ++       + +  +
Sbjct: 293 RLLQGDVGSGKTMVAFFALLQAIGSGVQGALMAPTEILALQHEETLRPLCDRLGLSLVTL 352

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
            G      R      +A G   ++IGTHAL  + + +  L L++VDEQHRFGV QRL L 
Sbjct: 353 LGRDKGPERAAKRRGVAEGYVPLVIGTHALLSEDVVFRDLGLIVVDEQHRFGVTQRLSLQ 412

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K     +L+MTATPIPR+L LT+ GD+ +S+I EKP GRKP+ T  +P  R+DEV+  +
Sbjct: 413 EKGRRADILVMTATPIPRSLALTTYGDMSVSQIREKPPGRKPVATRALPTTRLDEVMSAI 472

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
               + G + YW+CP +EE  +    SV ER  SL +     IA +HGRMS  +K++V+ 
Sbjct: 473 GRAAARGDQIYWVCPLVEENDQLALTSVTERAASLADATGLDIAAVHGRMSPQEKDAVVA 532

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F  G   +L+ATTVIEVG++  +A+I++IE+AE FGLAQLHQLRGRVGRG++ SSC+LL
Sbjct: 533 RFARGDADVLVATTVIEVGVNTPNATIMVIEHAERFGLAQLHQLRGRVGRGDKPSSCLLL 592

Query: 596 YHPP----LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           Y       L K +  RL+ L+ TEDGF+IAE DL  R  G+ LG  QSG  +F       
Sbjct: 593 YSTGDGEQLGKTAKARLNTLRETEDGFVIAEADLALRGPGDALGTAQSGQARFRFGDLSA 652

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           H  +LE A ++A  I+  DP L + RG ++R LLYL+  +EA + +R+G
Sbjct: 653 HKDVLEWAHQEAADIVRHDPYLDTKRGAALRTLLYLFGQDEAARRLRSG 701


>gi|85373852|ref|YP_457914.1| DNA helicase [Erythrobacter litoralis HTCC2594]
 gi|84786935|gb|ABC63117.1| DNA helicase [Erythrobacter litoralis HTCC2594]
          Length = 687

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 278/702 (39%), Positives = 419/702 (59%), Gaps = 17/702 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LN LFA + T  GVG K    L K+        TR  D+ ++ P  F+ R     
Sbjct: 1   MRPDILNALFAEVDTLDGVGPKLKKPLDKL------GLTRVRDVAYHLPDRFVTRRAVQN 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFE 119
           + E  E   + I    ++H   +   R P+++   D  G +  L +F R +   K +   
Sbjct: 55  LDEAGEGEQIVIQLTPTEHRGPRNPGRGPHRVFAQDAIGNVCALTYFGRASYSAKKLLPV 114

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V GK+++  + + +VHP ++     +    L E VY+L  GL+      ++ +AL
Sbjct: 115 GETRWVAGKLERYGDMLQIVHPDHVLEEGGESLQRLCEPVYALSEGLTQPKVAGLVSQAL 174

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           ++LP LPEWIE    +K+ +P  ++A  + H             AR+RLAYDELLA  +A
Sbjct: 175 TKLPELPEWIEPGQFEKEQWPIWSDALKLAHKSENGS-------ARDRLAYDELLANSLA 227

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+L+R   ++  G  +  +G    K+   +PF  T +QE +I++I +DM Q+  MLR+LQ
Sbjct: 228 LMLVRADNRQRKGRALVGDGSRIGKL--QLPFPLTGAQERSIREITEDMGQEAPMLRLLQ 285

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VAL  M  AVEAG QA ++AP  ILA+QH+E ++   + T   V ++TG  
Sbjct: 286 GDVGAGKTVVALETMLVAVEAGAQAALLAPTEILARQHFETLRDMARPTGTEVALLTGRD 345

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   L  +  G   I++GTHA+FQD++QY  L LV++DEQHRFGV QRL+L +K  
Sbjct: 346 KGRARESILMGLLDGSIDIVVGTHAIFQDAVQYRDLGLVVIDEQHRFGVAQRLQLARKGR 405

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L MTATPIPRTL L   G++D+S++ E P GR+ I T ++  +R+ EV+E +   
Sbjct: 406 RTPHTLAMTATPIPRTLTLAQYGEMDVSRLDELPPGRQAIDTRVVGQDRLAEVVEGVGRH 465

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           + +G++AYW+CP + + +  +  +   R+ +L E F  ++ ++HG++    K++ M+ F 
Sbjct: 466 IDKGQQAYWVCPMVRDSETVDIAAAEARYAALKERFGDTVVLVHGQLEPAAKDAAMERFA 525

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G  KLL+ATTVIEVG+DV  A++++IE AE FGLAQLHQLRGRVGRG E S C+LL   
Sbjct: 526 SGEAKLLVATTVIEVGVDVPAATLMVIEQAERFGLAQLHQLRGRVGRGSEKSVCLLLRGE 585

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            LS     RL++++ T+DGF IAEEDL+ R  GE+LG +QSG   F +A  E    LL +
Sbjct: 586 ALSDTGRKRLALMRETQDGFRIAEEDLELRGGGELLGTRQSGDTPFRVADLEQIQRLLPV 645

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A  DA+ ++ +D  L+S RG++ R+LLYL++ +   Q +R G
Sbjct: 646 AHADARLLIERDGGLSSERGEAARVLLYLFERDYGVQLLRGG 687


>gi|85708437|ref|ZP_01039503.1| DNA helicase [Erythrobacter sp. NAP1]
 gi|85689971|gb|EAQ29974.1| DNA helicase [Erythrobacter sp. NAP1]
          Length = 687

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/702 (40%), Positives = 427/702 (60%), Gaps = 17/702 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA   T  GVG K +  L K+        TR  DL ++ P  F+ R     
Sbjct: 1   MRPDILNPLFAESQTLDGVGPKLAKPLEKL------GLTRVKDLAYHLPERFVTRRAIAN 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFE 119
           + E +E   V +    ++H + +   R PY+++  D  G +  L +F R +   K     
Sbjct: 55  LDEGAEGEQVIVALTATEHRAARNPGRGPYRVMAQDEVGNMCALTYFGRASYTAKKQLPV 114

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  + G++ +  + + +VHP ++  +S      + E VYSL  GL+      ++ ++L
Sbjct: 115 GEKRWIAGRLDRYGDMLQIVHPDHVEKDSAAHLARMNEPVYSLSEGLTQPRVAGLVAQSL 174

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            RLP LPEWIE    +++ +P+  +A ++ H  +  K       AR+RLAYDELLA  +A
Sbjct: 175 ERLPELPEWIEPGQFEREGWPNWHDALHLAHKDQHEK-------ARDRLAYDELLANSLA 227

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LLL+R   +++ G P+  +  +  ++  ++PF  T +Q+ ++ +I  D+ Q+  MLR+LQ
Sbjct: 228 LLLVRADGRRKRGQPLKGDRSLRDRL--DLPFEMTGAQKRSVSEIEGDLQQEAPMLRLLQ 285

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VAL AM  AVEAG QA ++AP  ILA+QH+E ++K    T   V I+TG  
Sbjct: 286 GDVGAGKTVVALEAMLIAVEAGKQAALLAPTEILARQHFETLRKMAAPTGAEVAILTGRA 345

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   L  + +G   I++GTHA+FQDS+ Y  L LV++DEQHRFGVQQRL L  K  
Sbjct: 346 KGREREGLLMSLLNGDIDILVGTHAIFQDSVTYKDLALVVIDEQHRFGVQQRLALAAKGK 405

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            APH L MTATPIPR+L L   G++D+S++ E P GR+ I T ++   R+++++  ++  
Sbjct: 406 RAPHTLAMTATPIPRSLTLAQYGEMDVSRLDELPPGRQAIDTRVVAQERMEDIVSGVERH 465

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L+ G++AYW+CP + + + ++  +   R+ SL E F   + ++HG++    K++ M+ F 
Sbjct: 466 LATGQQAYWVCPMVRDSETADIAAAEARYASLKERFGDDVVLVHGQLRPEIKDANMERFA 525

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G  KLLIATTVIEVG+DV  A++++IE AE FGLAQLHQLRGRVGRG E S C+LL   
Sbjct: 526 SGGSKLLIATTVIEVGVDVPSATLMVIEQAERFGLAQLHQLRGRVGRGSEKSVCLLLRGG 585

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            LS+    RL++++ T+DGF IAEEDL+ R  GE+LG +QSG   F IA  E    LL  
Sbjct: 586 ELSEAGRKRLALMRETQDGFRIAEEDLELRGGGELLGTRQSGEAAFRIANLEQVQKLLPA 645

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A  DA+ ++ +D  LTS RG++ R+LLYL++ +   Q +R G
Sbjct: 646 AHADARLLIDRDGGLTSQRGEAARVLLYLFERDWGVQLLRGG 687


>gi|87199996|ref|YP_497253.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135677|gb|ABD26419.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 685

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/704 (40%), Positives = 424/704 (60%), Gaps = 23/704 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA  S+ +GVG   +  L K+        TR  D  ++ P  F+ R     
Sbjct: 1   MRPDLLNPLFAEASSLKGVGPGLARPLEKL------GLTRVKDFAYHLPDRFVLRRAIAN 54

Query: 61  ISEIS--EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVF 117
           + E S  E+ +V +T    + S+     R P++++  D +G  + L +F R +   K   
Sbjct: 55  LDEASVGEQIVVALTPRDYRQSA----GRGPFRVMAEDESGSFVALTYFGRASYTAKKQL 110

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G K  V G++ +      +VHP ++  +S  +   L E VY L  GL+    + ++ +
Sbjct: 111 PLGEKRWVAGRLDQFGQTWQIVHPDHVSDDSAGMLGQLNEPVYPLSEGLTQGRLQGLVHQ 170

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           +L+ LP LPEWIE  L Q+  +P+  EA  + H             AR+RLAYDELLA  
Sbjct: 171 SLAHLPQLPEWIEPGLAQRMDWPAWHEALPLAHKGEH-------KAARDRLAYDELLANS 223

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL+L+R+  +   G P++ +G +  K+  N+PF  T +Q+ +I +I  D++Q   MLR+
Sbjct: 224 LALILVRESNRSRQGTPLHGDGHLRAKL--NLPFDLTGAQKRSIAEIEGDVAQGAPMLRL 281

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT VAL AM  AVE+G QA ++AP  ILA+QH + + K    T + + ++TG
Sbjct: 282 LQGDVGSGKTAVALNAMLIAVESGAQAALLAPTEILARQHADTLSKMAVGTGVNIALLTG 341

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 R   L  +  G   I +GTHA+FQ+++ Y  L LV++DEQHRFGV QRL LTQK
Sbjct: 342 RDKGRARESILMGLLDGSIDICVGTHAIFQEAVAYRNLALVVIDEQHRFGVGQRLMLTQK 401

Query: 418 AT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           A   PH L MTATPIPRTL L   G++D+S++ E P GR+ I T ++   R+ +VIE + 
Sbjct: 402 ARRTPHCLAMTATPIPRTLTLAQYGEMDVSRLDEMPPGRQAIDTRVVAQERLADVIEGVG 461

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             +++G +AYW+CP + E++  +  +   RF +L E F   + ++HG++    K++ M+ 
Sbjct: 462 RHIAKGAQAYWVCPMVREQENDDMAAAEARFAALKERFGDMVVMVHGQLRPEVKDAAMER 521

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G  KLL+ATTVIEVG+DV +A++++IE AE FGLAQLHQLRGRVGRG + S+C+LL 
Sbjct: 522 FARGDAKLLVATTVIEVGVDVPNATLMVIEQAERFGLAQLHQLRGRVGRGSQQSTCLLLR 581

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
              LS+    RL++++ T+DGF +AEEDL+ R  GE+LG +QSG   F +A  E    LL
Sbjct: 582 GDALSETGRERLALMRETQDGFRLAEEDLRLRGGGELLGTRQSGETPFKVADFEQIAKLL 641

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            +A  DA+ ++ +D  L+S RGQ+ R+LLYL++ +   Q +R G
Sbjct: 642 PLAHDDARLLMERDGGLSSPRGQAARVLLYLFERDWGVQLLRGG 685


>gi|329850697|ref|ZP_08265542.1| DEAD/DEAH box helicase family protein [Asticcacaulis biprosthecum
           C19]
 gi|328841012|gb|EGF90583.1| DEAD/DEAH box helicase family protein [Asticcacaulis biprosthecum
           C19]
          Length = 688

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 287/695 (41%), Positives = 409/695 (58%), Gaps = 19/695 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP- 59
           MRP  L P +A ++T +GVG K +  L++ +       +   DL F+ PS  I R   P 
Sbjct: 1   MRPEILFPYYADVTTLKGVGPKLAPVLAQHVG------SHIRDLAFFLPSGVIKRPLVPL 54

Query: 60  ---KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNV 116
              +I E+ +   VTI GY    +      + P +I   D T  +TL++F+R     +  
Sbjct: 55  NRARIGEV-QTVAVTIAGYPPAPA------KGPQRIETVDDTTRLTLVYFHR-IRGFETQ 106

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
              G K  ++GK++   N++ M HP Y+   ++    P  E VY     L     +K++ 
Sbjct: 107 HPVGSKRLISGKLESFNNQLQMPHPDYLVDEARAAEIPACEPVYPATLDLGSRTLRKLVQ 166

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            ALS  P LPEW++  ++ K  +PS   A    H P    D +  +  R+RLAYDE LA 
Sbjct: 167 GALSITPELPEWLDLAMVDKYLWPSFHAALAAAHTPLSELDLDPDAKPRQRLAYDEALAH 226

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q+AL   RKQF++     +      A + L  +PF+ T +Q  A+ DI  D+   +RM R
Sbjct: 227 QLALK-ARKQFRQNTPSRVIDRHAWADRALTTLPFAMTGAQVRALADIRGDLRSGHRMNR 285

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVG+GKTLVAL+AM    E G Q+V+MAP  ILA+QH+E      +   I   I+T
Sbjct: 286 LVQGDVGAGKTLVALMAMIDVAEDGLQSVLMAPTEILARQHFEKSHSILEALGISSTIMT 345

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G      R +    +A G+A ++ GTHA+FQ+ + ++ L L ++DEQHRFGV QR KL  
Sbjct: 346 GRDKGKERDRKRAAVASGEAQVVFGTHAVFQEGVDFHSLQLAVIDEQHRFGVGQRQKLFS 405

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K  A H L M+ATPIPRTL LT  G+ D+S + EKPAGR+PI T ++P  R+ +V+ RLK
Sbjct: 406 KGEAVHYLSMSATPIPRTLALTQYGEADLSILDEKPAGRQPIHTAVVPRARLADVMHRLK 465

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             L++G++AYW+CP +E+  ES+  +  +R   L E     + ++HGRM    K++V+  
Sbjct: 466 GALADGQQAYWVCPLVEDTAESDLIAAEKRHEELQEALGIEVGLVHGRMPSETKDNVVTR 525

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G  ++L ATTV+EVGIDV  ASIIIIE AE FGLAQLHQLRGRVGRG   S+CILLY
Sbjct: 526 FAAGELRVLCATTVVEVGIDVPTASIIIIEQAERFGLAQLHQLRGRVGRGAAKSACILLY 585

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSKN+  RL +L++TEDGF IAE D K R EG+ILG KQSG P +    P  H +L+
Sbjct: 586 DSPLSKNAKARLELLRDTEDGFKIAEMDWKLRGEGDILGAKQSGFPDYRFVDPVRHTALI 645

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
            +A ++A +IL Q   L + R ++I +L  L+ + 
Sbjct: 646 ALAAREAVYILHQGDALPAPRRKAIEVLKQLFDWR 680


>gi|332186177|ref|ZP_08387923.1| OB-fold nucleic acid binding domain protein [Sphingomonas sp. S17]
 gi|332013992|gb|EGI56051.1| OB-fold nucleic acid binding domain protein [Sphingomonas sp. S17]
          Length = 684

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 279/703 (39%), Positives = 433/703 (61%), Gaps = 22/703 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA +++ +GVG   +  L ++         R +D+ F+ P+  IDR  R +
Sbjct: 1   MRPDILNPLFAEVTSLKGVGPGLAKPLERL------RIARVVDVAFHLPTGHIDRFPRDE 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFE 119
           +      R++ I+  + +H       R P ++   D  G  + L++F   +  +K +   
Sbjct: 55  LMVSDAGRVIAISLTVKEHR-VSSSPRGPTRVRAEDARGNSVALVYFGGNSGWVKKLLPV 113

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V+G++      + +VHP  +  +++D  F   EA+Y L  G++      +  +A+
Sbjct: 114 GETKIVSGRLDLYGQDLQIVHPD-LGDSTED--FREREAIYPLSEGITSRRLGALAAQAV 170

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH-NPRKAKDFEWTSPARERLAYDELLAGQI 238
            R P LPEWIE  L  ++ +P   +A   IH +P  AK       ARERL YDE+ A Q+
Sbjct: 171 ERAPELPEWIEPGLKAQRGWPDWKDALARIHADPADAK-------ARERLGYDEVFANQL 223

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           A+ L+R   +K  G  +N +G++  + +  +P++ T +Q   +++I  D++Q   MLR+L
Sbjct: 224 AMTLVRADTRKRRGRALNGDGRL--RDMLKLPYTLTGAQSRTVREIEGDLAQDAPMLRLL 281

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVG+GKTLVA +AM  AVEAG QA ++AP  ILA+QHYE ++K      + + ++TG 
Sbjct: 282 QGDVGAGKTLVAAMAMLIAVEAGAQAAMLAPTEILARQHYETLRKTLAGLPVEIAVLTGR 341

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L  +A G+  I++GTHA+FQ+++ Y  L LV+VDEQHRFGV QR+ L+ K 
Sbjct: 342 DKGKAREATLMALAAGEIDILVGTHAIFQETVTYRDLALVVVDEQHRFGVAQRMMLSAKG 401

Query: 419 TAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            AP H+L MTATPIPRTL L + G++D+S++ E P GR+PI+T ++  +R+DEV+  L  
Sbjct: 402 KAPPHLLAMTATPIPRTLTLANYGEMDVSRLDEMPPGRQPIETRVVSEDRLDEVVNALGR 461

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            LS+G +AYW+CP +EE ++S+  +   R  SL   F   + ++HG+M   +K++VM++F
Sbjct: 462 HLSDGGQAYWVCPLVEESEKSDLAAAEMRAESLRARFGERVGLVHGKMKPAEKDAVMEAF 521

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G   +L+ATTVIEVG+DV +A++I+IE+A+ FGLAQLHQLRGRVGRG  +S C+LL  
Sbjct: 522 AGGRLGVLVATTVIEVGVDVPNATLIVIEHADRFGLAQLHQLRGRVGRGGGLSRCLLLRG 581

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             LS+ S  RL++++ T DGF IAEEDL+ R  GE+LG +QSG   F +A PE    L++
Sbjct: 582 SHLSETSRARLALMRETNDGFRIAEEDLRLRGAGELLGTRQSGELAFRLATPENMADLMQ 641

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            A+ DA+ ++ +D  L + RGQ+ R  LYL++ +     +R+G
Sbjct: 642 CAQDDARLLIDRDGGLEAPRGQAARTALYLFERDAGVALLRSG 684


>gi|197105084|ref|YP_002130461.1| ATP-dependent DNA helicase RecG [Phenylobacterium zucineum HLK1]
 gi|196478504|gb|ACG78032.1| ATP-dependent DNA helicase RecG [Phenylobacterium zucineum HLK1]
          Length = 691

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/705 (40%), Positives = 419/705 (59%), Gaps = 19/705 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFAP+++ +GVG + +  L K+            D+L+  P S I R   P 
Sbjct: 1   MRPEILFPLFAPITSLKGVGPRVAPLLEKVAG------PIVRDVLWLKPHSLIRRT--PA 52

Query: 61  ISEISEERI-----VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKN 115
           +   + +       V I GY +  +     K +P+++ + D TG +TL+FF R  + L  
Sbjct: 53  VLSAARDGETMTFEVAIHGYQAPRT-----KAQPWRVQVTDPTGFMTLVFFGRYGDQLAQ 107

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175
               G +  V+GK+++      MVHP YI    +    P +EAVY    GL     +  +
Sbjct: 108 RHPVGARRIVSGKVEESSFGRQMVHPDYILPPEKAGEIPELEAVYPATEGLPARRVRGFV 167

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           +EAL R P LPEW +   L+++ FP+   A   +HNP+   D    SP R RLA+DELLA
Sbjct: 168 LEALERAPELPEWQDPAFLRQEQFPAWRAAMERLHNPQSEADLSLLSPHRRRLAFDELLA 227

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q+A+   +   ++E         + A+KI  ++PF  T +QE A+ +I  D+S   RM 
Sbjct: 228 HQLAMAQRKAARRREPAA-RVAASETAEKIRADLPFRFTGAQERALAEIRADLSAGERMS 286

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA+ AMA    +GGQ+ +MAP  ILA+QHYE I        +   ++
Sbjct: 287 RLVQGDVGSGKTVVAMCAMADVAASGGQSALMAPTEILARQHYETISGPLAAHGVGTVLL 346

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG    A RR+ L  +A G+A + +GTHALFQD + + KL LV++DEQHRFGV +R +L 
Sbjct: 347 TGRDKGAARREKLAALASGEARVAVGTHALFQDEVAFQKLQLVVIDEQHRFGVAERQRLQ 406

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K  A H++ M+ATPIPRTL LT  GD+D+S+I EKP GR P+ T   P+ R  EV  RL
Sbjct: 407 AKGEATHLIAMSATPIPRTLELTVYGDLDVSRIDEKPPGRTPVATRAAPMTRAHEVEARL 466

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +  +  G +A+WICP + E + ++  +   R   L E    S+ ++HGR+    K++VM 
Sbjct: 467 REAVQGGAQAFWICPLVSESEATDLAAAERRAAELTERIGPSVGLVHGRLPPAAKDAVMA 526

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F  G   +L+ATTV+EVG++V +A+I++IE AE FGLAQLHQLRGRVGRG   S+C+LL
Sbjct: 527 EFAEGRLSVLVATTVVEVGVNVPNATIMVIEQAERFGLAQLHQLRGRVGRGRRESACVLL 586

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y PPLS+ +  RL +L+ T+DGF+IAE+DL+ R  G+ LG++QSG P +  A P  H  L
Sbjct: 587 YDPPLSETAQQRLDILRRTDDGFVIAEKDLELRGGGDALGLRQSGFPDYAFADPIAHRDL 646

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +  A  DA+ I+ +DP+L   RG+++++L  L+ +        AG
Sbjct: 647 IAAAGDDARLIVMRDPELAGERGKALQVLQELFDWKANLGLRDAG 691


>gi|296283913|ref|ZP_06861911.1| DNA helicase [Citromicrobium bathyomarinum JL354]
          Length = 687

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/703 (40%), Positives = 427/703 (60%), Gaps = 19/703 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA + T  GVG K    L K+  C     TR  D+ ++ P  F+ R     
Sbjct: 1   MRPEILNPLFAEVDTLDGVGPKLKKPLEKL-RC-----TRVRDIAYHWPDRFVTRRPVET 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFE 119
           + E  E   + I   +++H S    +R PY++L  D  G +  L FF R +   K     
Sbjct: 55  LDEAGEGEQIIIALTVTEHRSGA-SRRAPYRVLATDSAGNVLALTFFGRASYTAKKQLPV 113

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V GK+++  + + MVHP ++          + E VYSL  GL+      +  +AL
Sbjct: 114 GEKRRVAGKLERYGDMLQMVHPDHVMKLDDAGLGQMREPVYSLAEGLTQPRMASLAAQAL 173

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            +LP LPEWIE  +L ++ +P+  EA   +H    A+D E    A++RLAYDELLA  +A
Sbjct: 174 EKLPDLPEWIEPGMLAQQKWPAWGEALRSVH----ARDDE---TAKDRLAYDELLANALA 226

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L++   +++ G P+  +G +  K+   +PF  T +QE +I++I  D++Q   MLR+LQ
Sbjct: 227 LQLVKADNRRKRGRPLAGDGHLRDKL--QLPFPLTGAQERSIREIEGDLAQDAPMLRLLQ 284

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VAL AM  AVEAG QA ++AP  ILA+QH+E +++  + T + V ++TG  
Sbjct: 285 GDVGAGKTVVALHAMLVAVEAGAQAALLAPTEILARQHFETLREMARPTGVEVALLTGRD 344

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   L  +  G   I++GTHA+FQ+++QY  L LV+VDEQHRFGV QRL++  K  
Sbjct: 345 KGRARESILMGLMDGSIQIVVGTHAIFQEAVQYRDLGLVVVDEQHRFGVSQRLQMAGKGK 404

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L MTATPIPRTL L + G++++S++ E P GR+ I T ++ ++R+ EV+E +   
Sbjct: 405 RPPHTLSMTATPIPRTLTLANYGEMEVSRLDELPPGRQAIDTRVVGMDRLPEVVEAVGRH 464

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+ G++AYW+CP + +++     +  +R+ +L   F   ++ ++HG++    K++ M  F
Sbjct: 465 LASGQQAYWVCPMVRDEEGMEKAAAEQRYAALKARFDDDAVVMVHGQLDPEVKDAAMARF 524

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G  KLL+ATTVIEVG+DV  +++I+IE AE FGLAQLHQLRGRVGRG E S C+LL  
Sbjct: 525 ASGQAKLLVATTVIEVGVDVPASTLIVIEQAESFGLAQLHQLRGRVGRGSEKSVCLLLRG 584

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             LS+    RL++++ T+DGF IAEEDL+ R  GE+LG +QSG   F IA  +     L+
Sbjct: 585 NQLSETGQRRLALMRETQDGFRIAEEDLELRGGGELLGTRQSGDTPFRIATLDQMQRFLD 644

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            A  DAK ++ +D  L   RG++ R+LLYL + +   + +R G
Sbjct: 645 PATADAKLLMDRDAGLEGERGEAARVLLYLMERDMGVRTLRGG 687


>gi|326403948|ref|YP_004284030.1| ATP-dependent DNA helicase RecG [Acidiphilium multivorum AIU301]
 gi|325050810|dbj|BAJ81148.1| ATP-dependent DNA helicase RecG [Acidiphilium multivorum AIU301]
          Length = 687

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 271/697 (38%), Positives = 427/697 (61%), Gaps = 20/697 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L P  A L++  G+G K +  +++ +   +       DLLF+ P  FIDR  +  ++E  
Sbjct: 9   LAPFRAELASLPGIGPKLAALIARAVGGPSVG-----DLLFHLPLHFIDRSRQSTLAEAE 63

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLND--GTGEITLLFFYRKTEMLKNVFFEGRKI 123
              + T+   + +H +   ++ +P+++++ D  G GE+ L    R  +     F  G K+
Sbjct: 64  PGSVATVMVEVVRHEA-PARRGQPHRVVIRDASGFGEVVLFHPGRLGQ-----FPVGAKL 117

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            ++GKI++  +R  + HP Y+   +Q  + P IE V  L  GL+  +  + +  AL+RLP
Sbjct: 118 LLSGKIERFADRPTLPHPDYVLPAAQAASLPAIEPVRGLTAGLTARVMARAVDGALARLP 177

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            LPEW    +LQK+ +P    A   +H P    D     PAR RLAYDELLA Q+A  L+
Sbjct: 178 ELPEWQLPSVLQKRRWPGFTAALRTLHAPESMPD---DRPAR-RLAYDELLARQLAFALI 233

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + ++  G     +G++    L    F+PT +Q +A+ +I  D++  +RMLR+LQGDVG
Sbjct: 234 RARRRRRPGRAFTGDGRLRAAALARFGFAPTDAQAAALAEIDADLAAPHRMLRLLQGDVG 293

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKTLVA +AM   VEAG QA ++AP  +LA+QH   ++K      + V ++TG++  A 
Sbjct: 294 AGKTLVATLAMLRVVEAGAQAALLAPTELLARQHLATLEKLCP---VPVALLTGSLRAAE 350

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR  L  +A G   I++GTHA+FQ S+ ++ L L ++DEQHRFGV+QR  L  K +A  +
Sbjct: 351 RRLVLAGLADGSIPIVVGTHAIFQKSVAFHDLGLAVIDEQHRFGVEQRFALGAKGSATDM 410

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL+L+  G++ +S+I  KPAGRKPI+T + P  R++E++  +  ++  G 
Sbjct: 411 LVMTATPIPRTLLLSHWGEMSVSRILAKPAGRKPIRTTLHPAGRMEEIVAAVARMIRRGG 470

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           + YW+CP + E +  +  +   RF +L E F   + + HGR     + + ++ F  G   
Sbjct: 471 RVYWVCPLVAESEAVDIAAAEARFAALAERFGDRVVLAHGRQPIEIRAAALERFARGEAD 530

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG+DV +A++++IE A+ FGLAQLHQLRGRVGRG   S C+LL+   LS+ 
Sbjct: 531 ILVSTTVIEVGVDVPEANVMVIERADRFGLAQLHQLRGRVGRGAAASFCLLLHGDELSQA 590

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL++L+ TEDGF IA+ED + R  G+ILG KQSG+P + +A  E  + L+ +A+KDA
Sbjct: 591 ARRRLAILRETEDGFRIADEDFRLRGGGDILGAKQSGLPGYRLADAERDEDLIPMAQKDA 650

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             +L  DP L + RG++ R+LL+L++ + A + + AG
Sbjct: 651 TLLLDTDPHLETPRGRAARVLLHLFEQDRAIRALVAG 687


>gi|148260751|ref|YP_001234878.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146402432|gb|ABQ30959.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
          Length = 723

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/697 (39%), Positives = 427/697 (61%), Gaps = 20/697 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L P  A L++  G+G K +  +++ +   +       DLLF+ P  FIDR  +  ++E  
Sbjct: 45  LAPFRAELASLPGIGPKLAALIARAVGGPSVG-----DLLFHLPLHFIDRSRQSTLAEAE 99

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLND--GTGEITLLFFYRKTEMLKNVFFEGRKI 123
              + T+   + +H +   ++ +P+++++ D  G GE+ L    R  +     F  G K+
Sbjct: 100 PGSVATVMVEVVRHEA-PARRGQPHRVVIRDASGFGEVVLFHPGRLGQ-----FPVGAKL 153

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            ++GKI++  +R  + HP Y+   +Q  + P IE V  L  GL+  +  + +  AL+RLP
Sbjct: 154 LLSGKIERFADRPTLPHPDYVLPAAQAASLPAIEPVRGLTAGLTARVMARAVDGALARLP 213

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            LPEW    +LQK+ +P    A   +H P    D     PAR RLAYDELLA Q+A  L+
Sbjct: 214 ELPEWQLPSVLQKRRWPGFTAALRTLHAPESMPD---DRPAR-RLAYDELLARQLAFALI 269

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + ++  G     +G++    L    F+PT +Q +A+ +I  D++  +RMLR+LQGDVG
Sbjct: 270 RARRRRRPGRAFAGDGRLRAAALARFGFAPTDAQAAALAEIDADLAAPHRMLRLLQGDVG 329

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKTLVA +AM   VEAG QA ++AP  +LA+QH   ++K      + V ++TG++  A 
Sbjct: 330 AGKTLVATLAMLRVVEAGAQAALLAPTELLARQHLATLEKLCP---VPVALLTGSLRAAE 386

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR  L  +A G   I++GTHA+FQ S+ ++ L L ++DEQHRFGV+QR  L  K +A  +
Sbjct: 387 RRLVLAGLADGAIPIVVGTHAIFQKSVAFHDLGLAVIDEQHRFGVEQRFALGAKGSATDM 446

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL+L+  G++ +S+I  KPAGRKPI+T + P  R++E++  +  ++  G 
Sbjct: 447 LVMTATPIPRTLLLSHWGEMSVSRILAKPAGRKPIRTTLHPAGRMEEIVAAVARMIRRGG 506

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           + YW+CP + E +  +  +   RF +L E F   + + HGR     + + ++ F  G   
Sbjct: 507 RVYWVCPLVAESEAVDIAAAEARFAALAERFGERVVLAHGRQPIEIRAAALERFARGEAD 566

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG+DV +A++++IE A+ FGLAQLHQLRGRVGRG   S C+LL+   LS+ 
Sbjct: 567 ILVSTTVIEVGVDVPEANVMVIERADRFGLAQLHQLRGRVGRGAAASFCLLLHGDELSQA 626

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL++L+ TEDGF IA+ED + R  G+ILG KQSG+P + +A  E  + L+ +A+KDA
Sbjct: 627 ARRRLAILRETEDGFRIADEDFRLRGGGDILGAKQSGLPGYRLADAERDEDLIPMAQKDA 686

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             +L  DP L S RG++ R+LL+L++ + A + + AG
Sbjct: 687 TLLLDTDPHLESPRGRAARVLLHLFEQDRAIRALVAG 723


>gi|254293940|ref|YP_003059963.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
 gi|254042471|gb|ACT59266.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
          Length = 687

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/696 (39%), Positives = 418/696 (60%), Gaps = 9/696 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L P F  L +  G+G K +  L +++          ++LL + P ++IDR  R  
Sbjct: 1   MRPEILFPFFKDLKSLPGIGPKTAPLLQRLVGGDTV-----LNLLLHLPINWIDRSVRDS 55

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
             E     I T+ G +   S F  Q   P ++ L D TG +TL+FF  +   L+  F   
Sbjct: 56  FFETIVGEIATVRGVVD--SVFAGQGNAPTRVRLLDDTGFLTLVFFRAQPAWLQKQFPMN 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           +++ V+G I+    +  MVHP ++ + ++    P +E VY L  G++  L +K I  +L 
Sbjct: 114 QEMIVSGLIEDFNGQRQMVHPDHVCNPAKGEEPPEVEPVYRLTAGVTSRLLQKAISASLE 173

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            LP LPEWI++  L++K +PS  +A   +H P +  D    + A ERLAYDE LA + AL
Sbjct: 174 NLPQLPEWIDQAFLEQKKWPSFVDALKQLHQP-ETLDQPALNLAHERLAYDEALAREFAL 232

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R   +K    PI         +L  + FSPT +Q  A KDI  D++++  M R+LQG
Sbjct: 233 NEIRLNRQKTPATPIPRHTHATNNLLEALKFSPTHAQLRAFKDIQTDLARELPMRRMLQG 292

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG+GKTLVA +A+A A  +G  +  M+P  +LA+Q    ++ + +      E +TG   
Sbjct: 293 DVGTGKTLVAALAIAQAAASGQFSAFMSPTEVLARQQATALQNFLKPIGYRCEALTGRDS 352

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           +  R++ L+ +A G+ H + GT ALFQ  +Q   L LVI+DEQHRFGV  RLKLT K  A
Sbjct: 353 KKRRKELLDAVAAGEIHCLSGTQALFQTDVQLPNLGLVIIDEQHRFGVADRLKLTSKGNA 412

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH+L+M+ATPIPR+L     GD+D   + EKP  RKPI T +    RI++V+  +     
Sbjct: 413 PHMLMMSATPIPRSLAAAINGDLDTCILDEKPQQRKPITTRVASEERIEDVMIAVAKAAD 472

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G++A+W+CP I+ +   +  SV+ R   L ++    +A++HG+M+  +K++ +D+F+ G
Sbjct: 473 RGERAFWVCPAIDSETAED-ASVIARKEILQKYVKHPVALVHGKMAPAEKDAALDAFRTG 531

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTV+EVGIDV +A+I++IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY PPL
Sbjct: 532 EASVLVATTVVEVGIDVPEATIMVIEHAEGFGLAQLHQLRGRVGRGDKSSSCLLLYKPPL 591

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S++   RL+ L+ TEDGFLIAE D KQR  G++LG+KQSG+P F I     H  + ++ R
Sbjct: 592 SESGQKRLNTLRETEDGFLIAEADFKQRGPGDLLGLKQSGLPNFKIIDLTRHIEMFQLVR 651

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
            D K +L++ P+    R ++I +L  L++ + A ++
Sbjct: 652 NDVKQLLSEGPNSNPPRTEAISLLNELFKTDIAIKY 687


>gi|114797135|ref|YP_760687.1| putative ATP-dependent DNA helicase recG [Hyphomonas neptunium ATCC
           15444]
 gi|114737309|gb|ABI75434.1| putative ATP-dependent DNA helicase recG [Hyphomonas neptunium ATCC
           15444]
          Length = 692

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/685 (40%), Positives = 406/685 (59%), Gaps = 12/685 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR   L PLFA L T  GVG K +  L K++       T   DL+ + P  ++DR  R  
Sbjct: 1   MRDERLFPLFAGLETLTGVGPKMTPLLQKLVGG-----TTVWDLVLHLPDRWLDRRVRAN 55

Query: 61  ISEISEERIVTITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
             E     +VT+ G + + H  F    R P+++ L D TG +TL +F      +K+ F  
Sbjct: 56  FDETVPGEVVTVKGEVHAYHQPFN--DRSPHRVQLVDSTGFLTLSYFRADPRWMKSQFPI 113

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V+G++++ +    + HP ++   ++    P +E +YSL  GL+      + ++AL
Sbjct: 114 GATRIVSGRVEEYRGERQITHPDFVVDPAKGEAPPAVEPIYSLSAGLTNRRVHTLALQAL 173

Query: 180 SRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           S +P  LPEW +  L+ +K +P+  EA +  H+P K  D +  + ARERLAYDE LA + 
Sbjct: 174 SLVPDDLPEWADPHLVAQKGWPAFKEALSWQHDP-KVYDEDRFALARERLAYDEALARES 232

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           A  L +   ++     I        +++  +P+ PT +Q  A  DI  D+++   M R+L
Sbjct: 233 AFALAQAARRQRPAPIIKAPPSAVNRLIDALPYRPTGAQMRAAADISSDVARGYPMRRLL 292

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVG+GKTLVA  A   A  AG Q+  MAP  +LA+Q Y+ +          V  ++G 
Sbjct: 293 QGDVGAGKTLVAAFAAVEAAAAGFQSAFMAPTEVLARQQYDTLDALLSPLGYTVAALSGR 352

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              + R   L  +A G   I+ GTHALFQ+++ +  L L+IVDEQHRFGV  R+KL  K+
Sbjct: 353 DRGSAREATLMGLADGSIQIVAGTHALFQEAVNFRNLGLIIVDEQHRFGVSDRMKLAGKS 412

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH+L+M+ATPIPRTL     GD+D+S + EKP GRKP++T  +P  R+++VIE +   
Sbjct: 413 ENPHMLVMSATPIPRTLAQAVHGDLDVSILDEKPPGRKPVETRAVPDTRLEDVIEAIGRA 472

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L  G++A+W+CP+++   E +  S V R  +L E       ++HGR+   +K++ ++ F+
Sbjct: 473 LKRGERAFWVCPRVD--IEDDDSSAVVRHAALEEELHVKAGLVHGRLKASEKDAALEDFR 530

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++L+ATTVIEVG+DV +A+I++IE AE FGLAQLHQLRGRVGRG++ S C+LLY P
Sbjct: 531 TGRTRILVATTVIEVGVDVPEATIMVIERAEGFGLAQLHQLRGRVGRGDKPSFCLLLYRP 590

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL   +  RL  L+ TEDGF IAE D + R  G++LG++Q+GM  + I     H +LLEI
Sbjct: 591 PLGDTARERLDTLRRTEDGFEIAEADFRLRGAGDVLGVRQAGMTDYRIIDLAKHAALLEI 650

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRI 683
           ARKDA+ +LT DPD    R QS+RI
Sbjct: 651 ARKDAEAVLTGDPDRKGERWQSLRI 675


>gi|329889843|ref|ZP_08268186.1| DEAD/DEAH box helicase family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328845144|gb|EGF94708.1| DEAD/DEAH box helicase family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 696

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 281/701 (40%), Positives = 412/701 (58%), Gaps = 22/701 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFA +ST +GVG + +  + K+            D+LF  PS  I R     
Sbjct: 1   MRPEILFPLFADVSTLKGVGPRSAPLVQKVAG------PLVRDVLFLSPSGVIQRRRTTA 54

Query: 61  ISEISEE---RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVF 117
           +  +  E     VTI   I  H     +   P K+   D TG I L++F      ++++ 
Sbjct: 55  MEAVDGEIGVFEVTIDRLIPPH-----KHGAPIKVRAIDDTGFIHLIWFAGSPRHIESLA 109

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G +  VTGK+++  + + + HP YI    +    PL E VY    GL+    +K+   
Sbjct: 110 PRGARRLVTGKVERFNSEVQIAHPDYIMPVEKADEIPLSEPVYPATQGLTSRQIRKLAQG 169

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           AL+  P LPEW E + L  + +     A   +H P    D    +P R+RLAYDEL A Q
Sbjct: 170 ALALAPELPEWQELNWLAARRWVGWRAALEALHAPTNEADLTPDTPVRQRLAYDELFAHQ 229

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL   R+  +      I   G+ + ++   +PF+ T++QE A+ +I  D+S   +M R+
Sbjct: 230 LALARRRRARQITPAARI-APGEASARLPAALPFALTRAQEQAVAEIRADLSSGEQMGRL 288

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT VA +A+A A   G QA +MAP  ILA+QHY+ +        +   ++TG
Sbjct: 289 LQGDVGSGKTAVAALALADAASNGFQAALMAPTEILARQHYDKLSPLLNQAGVRSLLLTG 348

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               A RR  L  +A G+A + IGTHALFQD++Q+++L L ++DEQHRFGV++R +L  K
Sbjct: 349 RDTPAERRGKLAALASGEAQVAIGTHALFQDAVQFHRLALAVIDEQHRFGVRERQRLQAK 408

Query: 418 ATAP----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                   H+L M+ATPIPRTL LT  G++++S++ EKP GR P+ T ++P+ RI EV +
Sbjct: 409 GDPALGGVHLLTMSATPIPRTLELTQYGELEVSRLMEKPPGRTPVTTAVLPLARIGEVAK 468

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           RLK  +  G +AYWICP + E +  +  +  +R   L ++  + + + HG+M   ++E+V
Sbjct: 469 RLKAAVQAGAQAYWICPLVAESEAIDLAAAEDRAEDLRKYLGTEVGLAHGQMPGAEREAV 528

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G   +L+ATTV+EVG+DV +ASI++IE+A+ FGLAQLHQLRGRVGRG + S+CI
Sbjct: 529 MAEFADGRLPVLVATTVVEVGVDVPNASIMVIEHADRFGLAQLHQLRGRVGRGAKASACI 588

Query: 594 LLY---HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
           LLY      L + +  RL  L+ TEDGF+IAEED + R  G+ LG+KQSG P +  A P 
Sbjct: 589 LLYGGEDGALGETAKERLETLRRTEDGFVIAEEDFRLRGGGDPLGLKQSGFPAYRFADPI 648

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
            H SLL  A  DA+ +L +DP+LTS RGQ++R+L  L+ + 
Sbjct: 649 RHRSLLLAAADDARLLLGRDPNLTSERGQAVRLLEALFDWK 689


>gi|315499871|ref|YP_004088674.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB
           48]
 gi|315417883|gb|ADU14523.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
           48]
          Length = 688

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 282/694 (40%), Positives = 396/694 (57%), Gaps = 17/694 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L P +  L+  +GVG K +  L + +           DLLF  PS  I   +RP 
Sbjct: 1   MRPEILFPYYTSLTGLKGVGPKIAPHLIRHVG------PYVRDLLFTLPSQLI---FRP- 50

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFY--RKTEMLKNVF 117
           +S I+E R+  +        S+Q    + P +I + D +G++ L +F+  R  E    V 
Sbjct: 51  VSRIAEARVGQVQTLCVTIGSYQKSAGKGPQRITVFDDSGQMQLTYFHAIRGFEQQHPV- 109

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G    ++GK++     + M HP Y+    +    PL E VY   + +S  L ++ +  
Sbjct: 110 --GETRWISGKVESFGASLQMNHPDYVVPLDKQDTIPLFETVYPATSAVSPRLMRRFVEA 167

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           AL R+P LPEW++ + L +      ++A    H P    D    + AR+RLAYDE LA Q
Sbjct: 168 ALHRVPDLPEWLDNETLGRLKISGFSDALRAAHAPVSEADLLPDATARKRLAYDEALAHQ 227

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +A+   RKQ ++     I      A K L  +PF+ T +Q  A+ DI  D+    RM R+
Sbjct: 228 LAMK-ARKQHRQATPALIIDRHVWADKALSTLPFALTGAQTRALSDIRGDLRSGERMNRL 286

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKTLV L+AM    EAG Q+V+MAP  ILA+QHYE       +  I   ++TG
Sbjct: 287 IQGDVGSGKTLVVLMAMIDVAEAGHQSVMMAPTEILARQHYEKSLPILSDMGISAVLMTG 346

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 R      +A G+  +I GTHA+FQ+ + +  L   ++DEQHRFGV QR +L  K
Sbjct: 347 RDKGKEREAKRAAVASGETTMIFGTHAVFQEGVAFKSLQFCVIDEQHRFGVGQRQRLFLK 406

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             + H L M+ATPIPRTL LT  G+ D+S + EKPAGR+PI T +IP  R+ EV +RLK 
Sbjct: 407 GESVHYLSMSATPIPRTLALTQYGESDLSVLDEKPAGRQPIHTAVIPRARLSEVFDRLKS 466

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            ++ G +AYWICP +EE  ES+  +V  R  SL E     + ++HGR+   +KE V+  F
Sbjct: 467 AIAAGSQAYWICPLVEESAESDLIAVEARHESLQEALGREVGLVHGRLPSAEKEDVVARF 526

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G   LL ATTV+EVGIDV +ASIIIIE AE FGLAQLHQLRGRVGRG   S+CILLY 
Sbjct: 527 ASGELPLLCATTVVEVGIDVPNASIIIIEQAERFGLAQLHQLRGRVGRGSAKSACILLYD 586

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PL + +  RL +L+ TEDGF IAE D K R EG++LG +QSG P +    P  H  L+ 
Sbjct: 587 MPLGQAAKARLELLRTTEDGFEIAEMDWKLRGEGDVLGARQSGFPAYRFVDPVAHADLIA 646

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
            A ++A++IL  +      R Q++ +L +L+ + 
Sbjct: 647 TASREAQYILQHEAQFPPQRRQALEVLRHLFDWR 680


>gi|260753801|ref|YP_003226694.1| helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258553164|gb|ACV76110.1| helicase domain protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 692

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 288/710 (40%), Positives = 425/710 (59%), Gaps = 28/710 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA   + +GVG      L K         TR  DLLFY PS  + R     
Sbjct: 1   MRPDILNPLFAETESLKGVGSALLKPLKK------RQLTRLKDLLFYLPSGQMRRVKSDH 54

Query: 61  IS--EISEERIVTITGYISQHSSFQLQKRRPYKILLNDG-TGEITLLFFYRKTEMLKNVF 117
           I+  ++    I+T+T    +H S     R P++IL  D   G+I LL+F   +   + + 
Sbjct: 55  INAKDVGATVILTLTAKEYRHPS----GRGPFRILAEDPFGGQIQLLWFGNHSSWARKLM 110

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G    V+GK+   + ++ +VHP  I   S++ + PL E +Y L  GL+     ++I +
Sbjct: 111 PIGETRLVSGKLDIYQEQLQIVHPSEIVPLSEENSIPLEETLYPLSDGLTHRRIGQLIRQ 170

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           A  + P LPEWIE  LL+K  +PS  EA   IH     +       A+ R+ YDE+ A Q
Sbjct: 171 AWEKSPDLPEWIEPSLLKKHQWPSWREAVERIHQHPDDR------AAKLRIGYDEIFANQ 224

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+R   +++ G P+  +G +   +  N+PF PT +Q  ++ +I  DM Q + MLR+
Sbjct: 225 LALKLIRAANRRKRGFPLKGDGHLRDAL--NLPFQPTGAQRRSLAEIEGDMQQASPMLRL 282

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT VAL ++  A EAG Q  ++AP  ILA+QH+E + +      + + ++TG
Sbjct: 283 LQGDVGSGKTWVALHSLLIAAEAGYQGALLAPTEILARQHFETLSQQLAGLPVNIALLTG 342

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 R   L  +A G  H+++GTHA+FQ+ + Y  L L I+DEQHRFGV QR+ L +K
Sbjct: 343 RDKGKLRESTLMGLADGSIHLLVGTHAIFQEKVSYKNLGLAIIDEQHRFGVAQRMMLAEK 402

Query: 418 AT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           A   PH+L+MTATPIPR+L+LT+ G++D+S++ E P GR+P++T +I   +I E+I  L 
Sbjct: 403 AIHTPHLLVMTATPIPRSLMLTAHGEMDVSRLDEMPPGRQPVETRVISSRKIPEIIASLG 462

Query: 477 VVLSEGKKAYWICPQIEEKK-ESNFR-----SVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
             ++EG ++YW+CP + E   E +F      +  +RF+ L +HF   + ++HG+M   +K
Sbjct: 463 RHIAEGGQSYWVCPAVGEADIEEDFSPNAIAAAEQRFSLLQQHFGKKVGLVHGKMKPAEK 522

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + VMD F  G   +L+ATTVIEVG++V +A+++II+ AE FGLAQLHQLRGRVGRG   S
Sbjct: 523 DKVMDDFAAGKIAVLVATTVIEVGVNVPNATLMIIDQAERFGLAQLHQLRGRVGRGGGRS 582

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+LL    L+  +  RL++++   DGF +AEEDL+ R  GEILG KQSG   F IA PE
Sbjct: 583 ICLLLRSEELTSVARERLALIRECNDGFRLAEEDLRLRGSGEILGTKQSGESHFQIASPE 642

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
               LL IA  DA+ ++ +D  L+  RGQ+ RI LYL++ +    F+R+G
Sbjct: 643 DLSELLPIANDDARLLVDRDGGLSGERGQAARIALYLFERDAGVSFLRSG 692


>gi|241762220|ref|ZP_04760302.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373267|gb|EER62886.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 692

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 289/710 (40%), Positives = 425/710 (59%), Gaps = 28/710 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA   + +GVG      L K         TR  DLLFY PS  + R    +
Sbjct: 1   MRPDILNPLFAETESLKGVGSALLKPLKK------RQLTRLKDLLFYLPSGQMRRVKSDQ 54

Query: 61  IS--EISEERIVTITGYISQHSSFQLQKRRPYKILLNDG-TGEITLLFFYRKTEMLKNVF 117
           ++  ++    I+T+T    +H S     R P++IL  D   G+I LL+F   +   + + 
Sbjct: 55  VNAKDVGATVILTLTAKEYRHPS----GRGPFRILAEDPFGGQIQLLWFGNHSSWARKLM 110

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G    V+GK+   + ++ +VHP  I   S++ + PL E +Y L  GL+     ++I +
Sbjct: 111 PIGETRLVSGKLDIYQEQLQIVHPSEIVPLSEENSIPLEETLYPLSDGLTHRRIGQLIRQ 170

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           A  + P LPEWIE  LL+K  +PS  EA   IH     +       A+ R+ YDE+ A Q
Sbjct: 171 AWEKSPDLPEWIEPSLLKKHQWPSWREAVERIHQHPDDR------AAKLRIGYDEIFANQ 224

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+R   +++ G P+  +G +   +  N+PF PT +Q  ++ +I  DM Q + MLR+
Sbjct: 225 LALKLIRAANRRKRGFPLKGDGHLRDAL--NLPFQPTGAQRRSLAEIEGDMQQASPMLRL 282

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT VAL ++  A EAG Q  ++AP  ILA+QH+E + +      + + ++TG
Sbjct: 283 LQGDVGSGKTWVALHSLLIAAEAGYQGALLAPTEILARQHFETLSQQLAGLPVNIALLTG 342

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 R   L  +A G  H+++GTHA+FQ+ + Y  L L I+DEQHRFGV QR+ L +K
Sbjct: 343 RDKGKLRESTLMGLADGSIHLLVGTHAIFQEKVSYKNLGLAIIDEQHRFGVAQRMMLAEK 402

Query: 418 AT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           A   PH+L+MTATPIPR+L+LT+ G++D+S++ E P GR+P++T +I   +I E+I  L 
Sbjct: 403 AIHTPHLLVMTATPIPRSLMLTAHGEMDVSRLDEMPPGRQPVETRVISSRKIPEIIASLG 462

Query: 477 VVLSEGKKAYWICP-----QIEEKKESNFRSVVE-RFNSLHEHFTSSIAIIHGRMSDIDK 530
             ++EG ++YW+CP      IEE    N  +  E RF+ L +HF   + ++HG+M   +K
Sbjct: 463 RHIAEGGQSYWVCPAVGEADIEEAFSPNAIAAAEQRFSLLQQHFGKKVGLVHGKMKPAEK 522

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + VMD F  G   +L+ATTVIEVG++V +A+++II+ AE FGLAQLHQLRGRVGRG   S
Sbjct: 523 DKVMDDFAAGKIAILVATTVIEVGVNVPNATLMIIDQAERFGLAQLHQLRGRVGRGGGRS 582

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+LL    L+  +  RL++++   DGF +AEEDL+ R  GEILG KQSG   F IA PE
Sbjct: 583 ICLLLRSEELTSVARERLALIRECNDGFRLAEEDLRLRGSGEILGTKQSGESHFQIASPE 642

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
               LL IA  DA+ ++ +D  L+  RGQ+ RI LYL++ +    F+R+G
Sbjct: 643 DLSELLPIANDDARLLVDRDGGLSGERGQAARIALYLFERDAGVSFLRSG 692


>gi|56552540|ref|YP_163379.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|56544114|gb|AAV90268.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 692

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/710 (40%), Positives = 425/710 (59%), Gaps = 28/710 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA   + +GVG      L K         TR  DLLFY PS  + R     
Sbjct: 1   MRPDILNPLFAETESLKGVGSALLKPLKK------RQLTRLKDLLFYLPSGQMRRVKSDH 54

Query: 61  IS--EISEERIVTITGYISQHSSFQLQKRRPYKILLNDG-TGEITLLFFYRKTEMLKNVF 117
           I+  ++    I+T+T    +H S     R P++IL  D   G+I LL+F   +   + + 
Sbjct: 55  INAKDVGATVILTLTAKEYRHPS----GRGPFRILAEDPFGGQIQLLWFGNHSSWARKLM 110

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G    V+GK+   + ++ +VHP  I   S++ + PL E +Y L  GL+     +++ +
Sbjct: 111 PIGETRLVSGKLDIYQEQLQIVHPSEIVPLSEENSIPLEETLYPLSDGLTHRRIGQLVRQ 170

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           A  + P LPEWIE  LL+K  +PS  EA   IH     +       A+ R+ YDE+ A Q
Sbjct: 171 AWEKSPDLPEWIEPSLLKKHQWPSWREAVERIHQHPDDR------AAKLRIGYDEIFANQ 224

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+R   +++ G P+  +G +   +  N+PF PT +Q  ++ +I  DM Q + MLR+
Sbjct: 225 LALKLIRAANRRKRGFPLKGDGHLRDAL--NLPFQPTGAQRRSLAEIEGDMQQASPMLRL 282

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT VAL ++  A EAG Q  ++AP  ILA+QH+E + +      + + ++TG
Sbjct: 283 LQGDVGSGKTWVALHSLLIAAEAGYQGALLAPTEILARQHFETLSQQLAGLPVNIALLTG 342

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 R   L  +A G  H+++GTHA+FQ+ + Y  L L I+DEQHRFGV QR+ L +K
Sbjct: 343 RDKGKLRESTLMGLADGSIHLLVGTHAIFQEKVNYKNLGLAIIDEQHRFGVAQRMMLAEK 402

Query: 418 AT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           A   PH+L+MTATPIPR+L+LT+ G++D+S++ E P GR+P++T +I   +I E+I  L 
Sbjct: 403 AIHTPHLLVMTATPIPRSLMLTAHGEMDVSRLDEMPPGRQPVETRVISSRKIPEIIASLG 462

Query: 477 VVLSEGKKAYWICPQIEEKK-ESNFR-----SVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
             ++EG ++YW+CP + E   E +F      +  +RF+ L +HF   + ++HG+M   +K
Sbjct: 463 RHIAEGGQSYWVCPAVGEADIEEDFSPNAIAAAEQRFSLLQQHFGKKVGLVHGKMKPAEK 522

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + VMD F  G   +L+ATTVIEVG++V +A+++II+ AE FGLAQLHQLRGRVGRG   S
Sbjct: 523 DKVMDDFAAGKIAVLVATTVIEVGVNVPNATLMIIDQAERFGLAQLHQLRGRVGRGGGRS 582

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+LL    L+  +  RL++++   DGF +AEEDL+ R  GEILG KQSG   F IA PE
Sbjct: 583 ICLLLRSEELTSVARERLALIRECNDGFRLAEEDLRLRGSGEILGTKQSGESHFQIASPE 642

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
               LL IA  DA+ ++ +D  L+  RGQ+ RI LYL++ +    F+R+G
Sbjct: 643 DLSELLPIANDDARLLVDRDGGLSGERGQAARIALYLFERDAGVSFLRSG 692


>gi|57238772|ref|YP_179908.1| ATP-dependent DNA helicase RecG [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578695|ref|YP_196907.1| ATP-dependent DNA helicase RecG [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58616758|ref|YP_195957.1| ATP-dependent DNA helicase RecG [Ehrlichia ruminantium str. Gardel]
 gi|57160851|emb|CAH57751.1| ATP-dependent DNA helicase RecG [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416370|emb|CAI27483.1| ATP-dependent DNA helicase RecG [Ehrlichia ruminantium str. Gardel]
 gi|58417321|emb|CAI26525.1| ATP-dependent DNA helicase RecG [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 677

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/688 (41%), Positives = 405/688 (58%), Gaps = 23/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+ +    G+       L K+  CG     R IDLL + P S+IDR  R ++SE S  +
Sbjct: 6   LFSSIYMLPGISSVIGGLLKKL--CGG---DRIIDLLLHIPQSYIDR--RTQLSEDSVGK 58

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           IVT  G +  H     + +  YK++L    GEI+L+FF    + LK++   G    ++G 
Sbjct: 59  IVTFVGIVKCHGFVGGRNKSQYKVILETNIGEISLIFFNYSLKYLKSILNVGSAYVISGT 118

Query: 129 IKKLKNRIIMVHPHYIFHN---SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           + +    + ++HP YI  +    QD++  +IE VY L  GL+     K +   ++ LP  
Sbjct: 119 LIRFCGCLQIMHPDYIVRDIKKFQDIS--IIEPVYPLVKGLTSRKISKFVKLGINLLPDF 176

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PEWI+ +LL    + S  E+   IH P      E  S  R RL YDEL + QIA+ ++R+
Sbjct: 177 PEWIDDELLVSNQWYSFKESLIKIHYP---DTLETLSLYRTRLVYDELFSHQIAMKVIRQ 233

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
              KE GI I  +      +L  +PF  T  QE  I +I      K RM+++L GDVGSG
Sbjct: 234 SSCKE-GISIVSKQIYYNHVLNKLPFKLTAGQEMVISEITHSQKSKQRMVKLLIGDVGSG 292

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VAL A+   VE GGQA +M P  ILA+QHY +I+    + +I VE++T  +      
Sbjct: 293 KTVVALFAILNVVENGGQAALMVPTEILAEQHYRWIQSILSDLKISVELLTSKVKGKKSI 352

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           K   ++  G+  ++IGTHALFQDS+ +Y L L+++DEQHRFGV QR+KL +K     VL 
Sbjct: 353 KKKLQL--GECQVVIGTHALFQDSVNFYNLNLIVIDEQHRFGVLQRMKLIKKGNIADVLF 410

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL     GD+D  ++ +KP  R  I+T ++ I R+ EV+ +L + L EG KA
Sbjct: 411 MTATPIPRTLEQVVYGDMDCLRLKDKPHNRLSIQTSLVNIERLSEVVSKLHIALEEGNKA 470

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           YWICP IEE +  N  +  +RF +L + F   + +IH R+S I+K+ +M+SF NG  KLL
Sbjct: 471 YWICPYIEESELLNIAAAEKRFFALKDIFNEKVGLIHSRLSKIEKDEIMNSFYNGDIKLL 530

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           IATTVIEVG+DV DA+IIIIENAE FGL+QLHQLRGRVGR  + S CILL+   LSK +Y
Sbjct: 531 IATTVIEVGVDVPDATIIIIENAEQFGLSQLHQLRGRVGRSNKPSFCILLHSKVLSKIAY 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            +L +L+  +DGF IAE+DL  R  G+ILGI+QSG+  F  A       L+ +A K A  
Sbjct: 591 KKLCILRQFQDGFYIAEQDLLLRGSGDILGIRQSGLSNFKFADIYRDYELISVANKYADK 650

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           I  +         + +R LL ++ +N +
Sbjct: 651 IYCEGE-----LSEHLRQLLTIFGHNSS 673


>gi|296116128|ref|ZP_06834746.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977234|gb|EFG83994.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 694

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 267/709 (37%), Positives = 423/709 (59%), Gaps = 29/709 (4%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            L PLFA + T  G+G      +++      A   R IDLLF+ P   +DR YRP+++  
Sbjct: 2   LLAPLFASVGTLPGIGPSVERLIAR-----AARGDRVIDLLFHLPDGLVDRRYRPQLAVA 56

Query: 65  SEERIVT----ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF--YRKTEMLKNVFF 118
              R+ T    +   I+  +S   + R+P++I++ DGTG+  L+FF  Y+   +  ++  
Sbjct: 57  EAGRVCTFHARVVRIIAPENS---RGRKPWRIVVGDGTGQAELVFFSPYQAQRLRVDM-- 111

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
              +I V+G +++  +R+ M HP Y+    Q+   PL++ V+ L  GL     +  +  A
Sbjct: 112 ---QICVSGMLERFGDRLSMPHPDYLVMGEQENTIPLLDPVWPLTGGLFPRQLRTALQGA 168

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF-------EWTSPARERLAYD 231
            +R P LPEW++ ++++K+ +P+  +A  I+H P    D          +  AR RL+YD
Sbjct: 169 FARFPDLPEWLDPEMVRKRKWPTFEQALRIMHRPSDFPDLMEGERYAAASERARARLSYD 228

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           ELLA QIA+   R   +   G  I   G +    L      PT +Q   +++I +D+   
Sbjct: 229 ELLAMQIAMARARIDNRDRPGRSIIGTGALRTVALSRFGHEPTTAQIRVLEEIGRDLRAP 288

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
           +RM R+LQGDVG+GKTLVAL++M  AVEAG QA +MAP  ILA+QH    +K +    + 
Sbjct: 289 HRMTRLLQGDVGAGKTLVALLSMLCAVEAGHQAAMMAPTEILARQHLATFQKLSP---VP 345

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V  ++G++    R++ALE I  G A ++IGTHALFQD +++  L LV++DEQHRFGV QR
Sbjct: 346 VAFLSGSVKGRARKQALEAIRTGAAPLVIGTHALFQDKVEFADLALVVIDEQHRFGVAQR 405

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           + L +K     VL+MTATPIPRTL+LT  GD+ +S++  KPAGRKPI+T +  ++ + E+
Sbjct: 406 MMLGEKGDRTDVLVMTATPIPRTLLLTQWGDMQVSRLDVKPAGRKPIRTSLHALSAMPEL 465

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
           +  ++  L+ G + +W+CP + E +  +  +   R   L E+F   + + HG+     +E
Sbjct: 466 VAAVRRALARGAQVFWVCPLVSESEALDIAAAEARHAMLKEYFGDLVGLAHGQQDIAVRE 525

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             + +F  G  ++L+ATTVIEVG+D+  A++++IE+AE FGLAQLHQLRGRVGRG+  S 
Sbjct: 526 EAISAFAEGRTRILVATTVIEVGVDIPSATVMMIEHAERFGLAQLHQLRGRVGRGQADSF 585

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C+LL+   L + +  RL++L++TEDGF+IA+ED + R  G++ G +QSG+P F +A    
Sbjct: 586 CLLLHDGQLGQTARRRLALLRDTEDGFVIADEDFRIRGGGDLAGHRQSGLPDFRMAAGVH 645

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            + LL  A +DA+ ++         R  +I ILL L+   +A + ++AG
Sbjct: 646 VEQLLRAAAQDAQRVVDGTAPAVHRRDAAIAILLELFSRTDAQRIMKAG 694


>gi|88658514|ref|YP_506893.1| ATP-dependent DNA helicase RecG [Ehrlichia chaffeensis str.
           Arkansas]
 gi|88599971|gb|ABD45440.1| ATP-dependent DNA helicase RecG [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 679

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 283/686 (41%), Positives = 414/686 (60%), Gaps = 21/686 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +F+ +    GV       L K+  CG     + IDLLF+ P S++DR  R  +SE S  +
Sbjct: 6   IFSSMYMLPGVNNVVGSLLKKL--CGG---DKIIDLLFHIPQSYVDR--RTALSEDSVGK 58

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           IVT  G +  H     +++  YKI+L+   GE++L+FF    + L++V   G    V+G 
Sbjct: 59  IVTFIGTVKCHGFIGRKRKSQYKIVLDTCIGEVSLIFFNYSLKYLRSVLKVGSTCVVSGT 118

Query: 129 IKKLKNRIIMVHPHYIFHN---SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           + +    + + HP YI  +    QD++  +IE +Y L  GL+     K++  ++  LP  
Sbjct: 119 LIRFLGCLQITHPDYIVTDIKKFQDIS--IIEPIYPLIRGLTSKRISKLVKLSVRLLPDF 176

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PEWI++ LL+   + S  E+   IH+P      E     R RLAYDELL+ QI++ ++RK
Sbjct: 177 PEWIDEKLLRDNRWNSWKESLIKIHHP---DTLEAVHLHRARLAYDELLSHQISVKMVRK 233

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            F  + G+ I  +      IL  +PF  T+ Q+  I  I +  + +NRM+++L GDVGSG
Sbjct: 234 -FDYQQGVSIVSKQLYYNDILNKLPFKLTEGQKEVISQITKSQASENRMVKLLIGDVGSG 292

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VAL A+   +E GGQ   MAP  ILA+QHY +I+    +  + VE++T  + +    
Sbjct: 293 KTVVALFAILNVIENGGQVAFMAPTEILAEQHYRWIRAILSDISVDVELLTSKVRKKQNI 352

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           K  +++  G+ +++IGTHALFQD + +  L L+I+DEQ RFGV QR++L  K+    VL 
Sbjct: 353 K--KKLQLGECNVVIGTHALFQDGVDFNNLNLIIIDEQQRFGVLQRMRLINKSNMADVLF 410

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL     GDID  ++ +KP  R PI+T I+ I R+ EVI +L++ L EG KA
Sbjct: 411 MTATPIPRTLEQVVYGDIDCLRLKDKPHNRLPIQTSIVNIERLFEVIAKLQLALQEGNKA 470

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           YWICP IE+ +  +  +  +RF +L E F   + +IH R+  I+K+ VM SF NG  KLL
Sbjct: 471 YWICPYIEDSELLDIAAAEKRFFTLQEVFGKDVGLIHSRLPKIEKDEVMMSFYNGNIKLL 530

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVG+D+ DA+IIIIENAE FGL+QLHQLRGRVGR ++ S CILL+   LSK +Y
Sbjct: 531 VATTVIEVGVDIPDATIIIIENAEQFGLSQLHQLRGRVGRSDKSSFCILLHGNMLSKIAY 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            +L +L+  +DGF IAE+DL  R  G++LGIKQSG+  F  A       L+ IA + A  
Sbjct: 591 KKLCILRKFQDGFYIAEQDLLLRGSGDVLGIKQSGLSNFKFADIYKDQGLISIAVEQAGA 650

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYN 691
           IL  D + T + G     LL+++ Y+
Sbjct: 651 IL--DANKTEL-GDHFNQLLHMFGYD 673


>gi|258542200|ref|YP_003187633.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-01]
 gi|256633278|dbj|BAH99253.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-01]
 gi|256636337|dbj|BAI02306.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-03]
 gi|256639390|dbj|BAI05352.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-07]
 gi|256642446|dbj|BAI08401.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-22]
 gi|256645501|dbj|BAI11449.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-26]
 gi|256648554|dbj|BAI14495.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-32]
 gi|256651607|dbj|BAI17541.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654598|dbj|BAI20525.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-12]
          Length = 715

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/708 (37%), Positives = 416/708 (58%), Gaps = 22/708 (3%)

Query: 4   SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
           S L PL APL +  GV    +  L +I     A   R +DLLF  P S  DR  RP +++
Sbjct: 19  SALAPLLAPLESLPGVSTARAKLLGRI-----AGGRRVMDLLFCLPESITDRRLRPTLAQ 73

Query: 64  ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           +  + I T+TG +    S   + R+P++++++D TG + + FF   +  L     +G  I
Sbjct: 74  LRPDTIATVTGVVQDIRSPAPRTRQPWRVMVDDATGVLEVAFF---SPWLAKQVVKGESI 130

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            ++GK+++  +++ +  P Y+   +Q    PL++ V+ L  GL     +  +  AL  LP
Sbjct: 131 ALSGKVERFGDKLTITSPDYLVPANQIERIPLLDPVWPLTAGLFTGQVRMAMAAALRLLP 190

Query: 184 V-LPEWIEKDLLQKKSFPSIAEAFNIIHNPR----KAKDFEW---TSPARERLAYDELLA 235
             LPEW +K L+++K++P  A A N +H P      A+   W    + A+ RLA DELLA
Sbjct: 191 PNLPEWHDKALIKQKNWPDFATALNWMHFPDTIPDSAQGDAWHGNRTRAQARLACDELLA 250

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q+A+ + ++  +   G  +N +G + ++ L +     T  Q+  +++I  DM+  + M 
Sbjct: 251 DQLAMRIAQQASRARPGRSLNGDGHLQKQALASFGHELTYGQKHVLREIEADMATPHCMS 310

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVG+GKTLVAL+AM  AVEAG QA +MAP  ILA+QH    ++ +    + V  +
Sbjct: 311 RLLQGDVGAGKTLVALMAMLRAVEAGTQAALMAPTEILARQHAATFRRLSP---VPVAFL 367

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           + ++    R++ L+ IA G A +++GTHAL QD +++  L L ++DEQHRFGV QRL L 
Sbjct: 368 SSSVKGKARKQTLQDIADGTAKLVVGTHALVQDGVKFADLGLAVIDEQHRFGVDQRLALV 427

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K     +L+MTATPIPRTL+LT  G++ IS++  KPAGRKP++T +  +   ++V+  +
Sbjct: 428 EKGHDADMLVMTATPIPRTLLLTRFGEMQISRLEGKPAGRKPVRTSLHSLGNFEDVLAGI 487

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              L +G + +W+CP + E +  +  +   R  +L E F   I + HG+     +E V+ 
Sbjct: 488 GRALDKGAQIFWVCPLVSESEAMDLAAAEARHAALVERFGDKIGLTHGQQDANVREEVLQ 547

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +F  G  ++L+ATTVIEVG+DV  A+I++IE+AE FGLAQLHQLRGRVGRG + S C++L
Sbjct: 548 AFAKGETRMLVATTVIEVGVDVPSATIMVIEHAERFGLAQLHQLRGRVGRGADASFCLML 607

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           +   L   +  RLS LK TEDGFLIA+ED + R  GE  G +QSG+P + +A   L D L
Sbjct: 608 HDEGLGLTARRRLSCLKETEDGFLIADEDFRLRGGGEATGRRQSGLPDYRMAPEMLVDML 667

Query: 656 LEIARKDAKHILTQDPDLTSVRGQ---SIRILLYLYQYNEAFQFIRAG 700
           L+ A  +A  IL   P  ++       + RILL L+   +A +    G
Sbjct: 668 LDTAHDEATEILPDGPPTSTPEKNLPVAARILLTLFNKTDAARIFSGG 715


>gi|103487136|ref|YP_616697.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
 gi|98977213|gb|ABF53364.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
          Length = 701

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 282/704 (40%), Positives = 423/704 (60%), Gaps = 20/704 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA L+  +GVG + +  L+++         R +D+LF+ P+  I R    +
Sbjct: 14  MRPEILNPLFAALTDLKGVGPQLAKPLTRL------GLERLVDVLFHLPTGLISRIAVER 67

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFE 119
           + +    + + +   +  +   +   R P+ +   D  G+ + L++F R + + + +F  
Sbjct: 68  LDQAQPGQTIIVDLTVQDYRPGR-SPRAPFGVEAFDRAGDHVRLVYFGRTSGLARKLFPL 126

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V+G++    +   +VHP ++     +      E VY L  GL+     ++   AL
Sbjct: 127 GETRRVSGRLDLYGDMRQIVHPDHVAEPGDEGAIAEHEPVYPLTEGLTNARLSQLAAIAL 186

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH-NPRKAKDFEWTSPARERLAYDELLAGQI 238
            R P L EWI+  LL  +++P   EA    H NPR          AR+RLAYDE+ A Q+
Sbjct: 187 DRRPDLAEWIDAPLLASRNWPDWREAVARAHANPRD-------EAARDRLAYDEIFANQV 239

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL+L+R+  +   G  I  +G++   +   +PF  T +QE   ++I  DM+Q   MLR+L
Sbjct: 240 ALMLIRQGLRNRRGRAIVGDGRLTGAL--RLPFGLTGAQERVGREIAGDMAQDTPMLRML 297

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVAL AM  AVEAG QA ++AP  ILA+QH+  ++       + + I+TG 
Sbjct: 298 QGDVGSGKTLVALRAMLTAVEAGTQAALLAPTEILARQHHATLRAMLAGLPVNLAILTGR 357

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L  +A G   I+IGTHA+FQ ++ Y  L LV+VDEQHRFGV QRL LTQKA
Sbjct: 358 DKGRVRESTLMGLADGSIDILIGTHAIFQQAVTYRDLALVVVDEQHRFGVAQRLMLTQKA 417

Query: 419 T-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH+L+MTATPIPRTL+L + G++D+S+I E P GR P+ T ++ + R+DEVI  L+ 
Sbjct: 418 ARPPHLLVMTATPIPRTLLLANHGEMDVSRIDEMPPGRTPVDTRVVSVERLDEVIASLER 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDS 536
            L+ G +AYW+CP + E + S   +   R   L E   ++ + ++HGRM   +K+ VM  
Sbjct: 478 HLATGAQAYWVCPLVAESEASELAAAEARAALLAERLGAARVGLVHGRMKGPEKDDVMAR 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F++G   +L+ATTVIEVG+DV  AS++++E+AEHFGLAQLHQLRGRVGRG   S C+LL 
Sbjct: 538 FQSGAIGVLVATTVIEVGVDVPAASLMVVEHAEHFGLAQLHQLRGRVGRGAAKSVCLLLR 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            P LS+ +  RL++++ T DGF+IAE DL+ R  GE+LG+KQSG   + +A PE    LL
Sbjct: 598 SPTLSETARERLALMRETNDGFVIAERDLELRGGGELLGLKQSGEADYRLASPEQLVRLL 657

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            +A  DA+  + +D  +   RG+++R+ LYL++ + A   +R+G
Sbjct: 658 PVAHDDARLFVERDGGMEGARGEAVRLCLYLFERDAAVPLLRSG 701


>gi|73666667|ref|YP_302683.1| DEAD/DEAH box helicase:helicase, C- terminal:TypeIII restriction
           enzyme, res subunit [Ehrlichia canis str. Jake]
 gi|72393808|gb|AAZ68085.1| DEAD/DEAH box helicase:Helicase, C- terminal:TypeIII restriction
           enzyme, res subunit [Ehrlichia canis str. Jake]
          Length = 678

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 275/684 (40%), Positives = 410/684 (59%), Gaps = 18/684 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +F+ +    GV K     L K+  CG     + IDLLF+ P ++IDR  R  +SE +  +
Sbjct: 6   IFSSIYMLPGVNKVVGNLLKKL--CGG---DKIIDLLFHIPQNYIDR--RTGLSEEAVGK 58

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           IVT  G +  H     +++  YKI+L+   GE++L+FF+   + LK+V   G +  ++G 
Sbjct: 59  IVTFIGTVKSHGFIGGRRKAQYKIVLDTCIGEVSLVFFHYSVKYLKSVLKVGSECVISGT 118

Query: 129 IKKLKNRIIMVHPHYIFHNSQDV-NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           + +    + + HP YI  +     +  +IE VY L  G++     K++  ++  LP  PE
Sbjct: 119 LIRFFECLQITHPDYIITDVGKFHDISIIEPVYPLIKGVTSKRISKLVKLSIGLLPDFPE 178

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
           WI++ LL+   + S  E+   IH+P   K  E  S  + RLAYDELL+ QI++ ++RK F
Sbjct: 179 WIDERLLRDNQWDSWKESLIKIHHP---KTLETVSLHKMRLAYDELLSHQISMKMVRK-F 234

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             + G+ I  +      IL  +PF  T  QE  I  I +  +  +RM+++L GDVGSGKT
Sbjct: 235 DCKQGVSIISKRIYHDDILNKLPFKLTAGQEEVISQITESQALNSRMVKLLIGDVGSGKT 294

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VAL A+   +E  GQ   MAP  ILA+QHY +I+       + VE++T  + +    K 
Sbjct: 295 VVALFAILNVIENEGQVAFMAPTEILAEQHYRWIQGILSGIPVSVELLTSKVRKKQDIK- 353

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             ++  G+  +++GTHALFQD + +  L L+I+DEQ RFGV QR+KL  K+    VL MT
Sbjct: 354 -RKLQLGECKVVVGTHALFQDGVDFNNLNLIIIDEQQRFGVLQRMKLINKSNLADVLFMT 412

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL     GDID  ++ +KP  R PI T II I ++ EV+ +L+  L +G KAYW
Sbjct: 413 ATPIPRTLEQVVYGDIDCLRLEDKPHNRLPIHTSIINIEKLYEVVTKLQFALRDGNKAYW 472

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           ICP IE+ +  +  +  +RF SL E F   + ++H R+S ++++ VM SF +GT KLL+A
Sbjct: 473 ICPYIEDSELVDIAAAEKRFFSLKEVFGQEVGLVHSRLSKVERDDVMMSFYHGTIKLLVA 532

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG+DV DA+IIIIENAE FGL+QLHQLRGRVGR ++ S C+LL+   +SK +Y +
Sbjct: 533 TTVIEVGVDVPDATIIIIENAEQFGLSQLHQLRGRVGRSDKASFCVLLHGSMVSKVAYKK 592

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L +L+ ++DGF IAE+DL  R  G++LG+KQSG+  F  A      +L+ IA + A+ IL
Sbjct: 593 LCILRKSQDGFYIAEQDLLLRGSGDVLGVKQSGLSNFKFADIYSDQNLISIATEQAQEIL 652

Query: 668 TQDPDLTSVRGQSIRILLYLYQYN 691
             +  L     Q    LL ++ Y+
Sbjct: 653 NANTKLNDNLAQ----LLCMFGYD 672


>gi|254419102|ref|ZP_05032826.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
 gi|196185279|gb|EDX80255.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
          Length = 699

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 278/698 (39%), Positives = 411/698 (58%), Gaps = 17/698 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFA +S+ +GVG +    + K+            DL F  PS  I R  RP 
Sbjct: 5   MRPQILFPLFAEVSSLKGVGPRVLPLVQKVAG------PLVRDLAFLSPSGVIVR--RPM 56

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
            +  + +  V I   +        +   P K+  +D TG + L++F    + +  +   G
Sbjct: 57  EAATAVDGEVGIFEIVIDRLFVPSRPGAPLKVRASDPTGFVHLVWFGGSPQHIDRLLPRG 116

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+GK+++    + +VHP  I    +  + P  E VY    GL+    +K++  AL 
Sbjct: 117 ETRLVSGKVERFNGEVQIVHPD-IVTPDKAADIPASEPVYPATQGLTSRQLRKLVQAALP 175

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
             P LPEW +   L+K+++     A + +H P    D    +PAR+RLAYDE LA Q+AL
Sbjct: 176 AAPDLPEWQDPAWLKKQNWLGWRAALDALHAPAGEPDLTPEAPARQRLAYDEFLAHQLAL 235

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
              R+  + +    I   G  +  +L+ +PF+ T +Q  A+ +I +D+    +M R+LQG
Sbjct: 236 ARRRRAREIKPSA-IIAPGAASDHLLQALPFTLTNAQAQAVAEIRRDLVSGKQMGRLLQG 294

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT VA +A+A A  +G Q+ +MAP  ILA+QHYE +    +   ++  ++TG   
Sbjct: 295 DVGSGKTAVAALALADAASSGFQSALMAPTEILARQHYEKLGPLLEAAGVVSVLLTGRDT 354

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT- 419
              RR+ L  +A G A + IGTHALFQD++++ +L L ++DEQHRFGV +R +L  K   
Sbjct: 355 NGQRREKLAALASGHAQVAIGTHALFQDAVRFDRLALAVIDEQHRFGVSERQRLQAKGDP 414

Query: 420 ---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
              A H+L M+ATPIPRTL LT  G++++S++ EKP GR P+ T ++P+ RI EV  RLK
Sbjct: 415 RIGAVHLLTMSATPIPRTLELTQYGELEVSRLMEKPPGRTPVTTAVVPLARIGEVAARLK 474

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            VL  G +AYWICP + E +  +  + V+R + L       + + HG+M   ++E+VM  
Sbjct: 475 TVLDAGAQAYWICPLVAESEAIDLAAAVDRADDLRRLLGVEVGLAHGQMPGAEREAVMAD 534

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G   LL+ATTV+EVG+DV +ASI++IE+A+ FGLAQLHQLRGRVGRG + SSCILLY
Sbjct: 535 FADGRLPLLVATTVVEVGVDVPNASIMVIEHADRFGLAQLHQLRGRVGRGAKASSCILLY 594

Query: 597 ---HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
                 L + +  RL  L+ TEDGF+IAEED + R  G+ LG+KQSG P +  A P  H 
Sbjct: 595 GGQDGALGETAKERLETLRRTEDGFVIAEEDFRLRGGGDPLGLKQSGFPAYRFADPIRHR 654

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           +L+  A  DA+ IL +DPDLTS RGQ++++L  L+ + 
Sbjct: 655 ALMLAAADDARLILGRDPDLTSERGQAVQVLEELFDWK 692


>gi|330994822|ref|ZP_08318744.1| ATP-dependent DNA helicase recG [Gluconacetobacter sp. SXCC-1]
 gi|329758083|gb|EGG74605.1| ATP-dependent DNA helicase recG [Gluconacetobacter sp. SXCC-1]
          Length = 715

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 266/703 (37%), Positives = 417/703 (59%), Gaps = 30/703 (4%)

Query: 5   FLNPLFAPL----STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           F NPL APL     + +GV    +  L+++     A   R IDLLF+ P S +DR YRP 
Sbjct: 12  FPNPLLAPLLAGVDSLKGVRPATARLLARV-----AGGARVIDLLFHLPESVVDRRYRPN 66

Query: 61  ISEISEERIVTITGYISQ---HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVF 117
           +      R+ T+   +S+    +    + RRP+++L++DGTG+  L+FF   +  L    
Sbjct: 67  LRTAETGRVCTLHVTVSRVVPPAPGGGRGRRPWRVLVSDGTGDAELVFF---SPHLVRRL 123

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G+ I V+G +++   R+ M HP Y+   ++    PL++ V+ L  GL     +  +  
Sbjct: 124 EAGQDICVSGTLERFGERLNMAHPDYLVPAARMGEIPLLDPVWPLTAGLFSSQVRSAVRA 183

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF-------EWTSPARERLAY 230
           A    P LPEW +  +L+++ +P   +A   +H P    +          +  AR RLA 
Sbjct: 184 AFDIFPPLPEWQDATVLRQRRWPGFEDALRTLHRPCDLPELMEGDALVAASERARARLAC 243

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           D+LLA Q+A+   R+  +   G  +  +G + +  L      PT +Q  A+ +I  D++ 
Sbjct: 244 DDLLAQQVAMAQARRLNRLRPGRAVAGDGSLRRVALSRFGHEPTTAQVRALAEIDADLAA 303

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
             +M R+LQGDVG+GKTLVAL AM  AVEAG QA +MAP  ILA+QH   +  +T+ + +
Sbjct: 304 PRQMTRLLQGDVGAGKTLVALQAMLGAVEAGHQAALMAPTEILARQH---LATFTKLSPV 360

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V  ++G++    RR+AL RIA G A ++IGTHALFQ+S+ +  L L ++DEQHRFGV+Q
Sbjct: 361 PVAFLSGSVKGKARREALARIADGTARLVIGTHALFQESVVFQDLALAVIDEQHRFGVEQ 420

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           R  L +K     VL+MTATPIPR+L+LT  GD+ +S++  KPAGRKP++T +  ++ +D+
Sbjct: 421 RAMLGEKGPQTDVLVMTATPIPRSLLLTQWGDMQVSRLDVKPAGRKPVRTSLHALSAMDD 480

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDID 529
           ++  ++  L+ G + +W+CP + E + ++  +   R  +L  HF + S+ + HG+     
Sbjct: 481 LLAGMERALARGARIFWVCPLVSESETTDIAAAEARHAALAAHFGAESVGLAHGQQDIAL 540

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E  +  F  G  ++L+ATTVIEVG+D+ DA+++IIE+AE FGLAQLHQLRGRVGRG   
Sbjct: 541 REQAIADFAAGRTRILVATTVIEVGVDIPDATVMIIEHAERFGLAQLHQLRGRVGRGRAE 600

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+LL+   L + +  RL++L+ TEDGFLIA+ED + R  G++ G +QSG+P   +A P
Sbjct: 601 SYCLLLHDSALGQTARRRLALLRETEDGFLIADEDFRLRGGGDVAGRRQSGLPDMRLASP 660

Query: 650 ELHDSLLEIARKDAKHILTQDPD----LTSVRGQSIRILLYLY 688
              D LL +A +DA+ ++   PD        R  ++ +LL L+
Sbjct: 661 LHVDMLLTLAAQDARRLVDTPPDQRPPALRAREPAVSLLLELF 703


>gi|190570903|ref|YP_001975261.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019420|ref|ZP_03335226.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357175|emb|CAQ54590.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212994842|gb|EEB55484.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 673

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 276/684 (40%), Positives = 399/684 (58%), Gaps = 24/684 (3%)

Query: 14  STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73
           S    + K +S  L K+  CG     R +DLLFY P S++DR      +++ E    T  
Sbjct: 9   SRLENIPKFHSAILPKL--CGG---DRVMDLLFYRPLSYVDRSKSLPDAQVGE--FTTFV 61

Query: 74  GYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
             + +H    + + RPYKI++   +  + ++FF    + L  +F  G  I ++GK++K  
Sbjct: 62  AKVYEHQRPTV-RGRPYKIIVESESQYLFIVFFNYSVKYLYKLFPVGTDIVISGKLEKFA 120

Query: 134 NRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192
            R  + HP Y+  + +Q      IE +Y L  G++    + II   L  LP LPEWI++ 
Sbjct: 121 ERWQITHPDYMLSDINQFKEIACIEPIYQLCRGITNKSIRNIISSNLKDLPDLPEWIDET 180

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
           L+++K + +  E+   +H P    + E     RERLAYDEL A Q+AL L R+   K+ G
Sbjct: 181 LIKQKKWLNWKESIIRLHRPSSLAEAE---VCRERLAYDELFAYQLALKLARENHVKKEG 237

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
               +  K  +++L  +PF  T  Q  AI +I +    + RM+ +LQGDVGSGKT+VAL 
Sbjct: 238 KEFIILSKYKEQVLNELPFQLTNDQIRAIDEISERQKSRYRMVSLLQGDVGSGKTVVALF 297

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           AM   VE   QA +MAP  ILA+QHY +I++    T I V ++TG   +  R+  +  +A
Sbjct: 298 AMLNVVENNMQAALMAPTTILAEQHYNWIEEALSCTDIKVALLTGKTARKERKIIMNELA 357

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            G  +I+IGTHALFQ ++ +  L L ++DEQ RFGV QR +L  K     +L +TATPIP
Sbjct: 358 SGILNIVIGTHALFQANVTFKNLGLAVIDEQQRFGVIQRNRLVGKGENTDILFVTATPIP 417

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL     GD++ S + EKP  R PIKTVI+ + ++ ++I+RLK  ++ G+KAYWICP I
Sbjct: 418 RTLQQAMYGDVECSILREKPKSRLPIKTVIMNVKKVSDIIQRLKDAINRGEKAYWICPYI 477

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           EE +E N  +   RF  L + F   + IIHG+++   K+ VM SFK     LL+ATTVIE
Sbjct: 478 EENEELNIAAAEMRFQELQKTFFDRVGIIHGKLTQEQKDQVMFSFKRNEFSLLVATTVIE 537

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VGIDV DA+I+IIENAE FGL+QLHQLRGRVGRG + S C+LLY   LSK+SY++L ++ 
Sbjct: 538 VGIDVPDATIMIIENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYD-NLSKSSYSKLKIMC 596

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            ++DGF IAE+D+  R  G+ILG KQSG  +F  A       LL +A   AK  +     
Sbjct: 597 ESQDGFYIAEKDMMLRGSGDILGTKQSGCMEFKFADLYEDRELLNLAYNSAKGTIA---- 652

Query: 673 LTSVRGQSIRILLYLYQYNEAFQF 696
                  +  +LL +++Y     F
Sbjct: 653 -------NFELLLDIFEYRSRLHF 669


>gi|120553574|ref|YP_957925.1| ATP-dependent DNA helicase RecG [Marinobacter aquaeolei VT8]
 gi|120323423|gb|ABM17738.1| ATP-dependent DNA helicase RecG [Marinobacter aquaeolei VT8]
          Length = 691

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 274/687 (39%), Positives = 399/687 (58%), Gaps = 40/687 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   S    K+   G  +     DLLF+ P  + DR     +  +    I  
Sbjct: 8   PVTQLKGVG---SALAEKLARLGIHS---IQDLLFHLPYRYEDRTRVVPMGSLRIGDIAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + +   + +RR  ++ L D TG + + FF+      KN   EG ++   G+++ 
Sbjct: 62  VEGEVMK-ADLVMGRRRSLQVTLRDDTGFLVMRFFHFNAAQ-KNQLAEGTRVRCFGEVRP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE-----AVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
            +      HP Y    +     P  E      VY L  G+     + +  +ALS L   P
Sbjct: 120 GRAGYEFYHPEY---QTNPPAMPPAEQATLTPVYPLTEGIQQPRVRGLCQQALSYLDRYP 176

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240
             +W+   LL     P I EA  ++H P          E   PA++RL  +ELLA Q++L
Sbjct: 177 IKDWLPPALLADYQLPGITEAVRLVHLPPAGAPVHLLVEGKHPAQQRLVMEELLAHQLSL 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +R+Q +    +P+   G  A++ L  +PFS T +Q   + DI QD+SQ   MLR++QG
Sbjct: 237 LQVREQIQAREALPLLPAGDRAERFLEQLPFSLTGAQRHVMADIRQDLSQPVPMLRLVQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA ++   A+EAG Q  +MAP  ILA+QHY+  + + +   + +  ++G + 
Sbjct: 297 DVGSGKTVVAALSALQAIEAGAQVALMAPTEILAEQHYQNFRNWLEPLGVELVWLSGKVK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT- 419
              R+ AL  +A G+A I IGTHALFQD + + +L LVIVDEQHRFGV QRL L +K   
Sbjct: 357 GKARQSALNAVAEGRAQIAIGTHALFQDDVVFQRLALVIVDEQHRFGVHQRLALREKGVG 416

Query: 420 ---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
              APH L+MTATPIPRTL +++  D+D S I E P GRKPI+T+++P +R D++IER++
Sbjct: 417 GTLAPHQLIMTATPIPRTLAMSAYADLDTSVIDELPPGRKPIETIVLPESRRDDIIERVR 476

Query: 477 VVLSEGKKAYWICPQIEEKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
               EG++AYW+C  IEE +       E   + +VER   L      SI ++HGR+   +
Sbjct: 477 KACREGRQAYWVCTLIEESEALQCQAAEVTAQELVERLPDL------SIGLVHGRLKAQE 530

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K +VM+ FK+G   LL+ATTVIEVG+DV +AS+IIIEN E  GLAQLHQLRGRVGRGE+ 
Sbjct: 531 KAAVMERFKDGELDLLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGEQA 590

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+YHPPLS N   RL  L++++DGF IAE+DL+ R  GE+LG +Q+G+ +F +A  
Sbjct: 591 SFCVLMYHPPLSNNGKARLQALRDSQDGFFIAEKDLEIRGPGEVLGTRQTGLMQFRLADF 650

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSV 676
           E     +E  R D    L ++P + S 
Sbjct: 651 ERDKGWIEPIR-DMAPSLMREPRVVSA 676


>gi|149376197|ref|ZP_01893962.1| ATP-dependent DNA helicase RecG [Marinobacter algicola DG893]
 gi|149359602|gb|EDM48061.1| ATP-dependent DNA helicase RecG [Marinobacter algicola DG893]
          Length = 691

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 266/676 (39%), Positives = 395/676 (58%), Gaps = 33/676 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++T +GVG   +  LSK+            DLLF+ P  + DR     +  +    +  +
Sbjct: 9   VTTLKGVGNALADKLSKL------GIRSLQDLLFHLPHRYEDRTRIIPMGNLRIGDVGVV 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G + + +   + +RR  ++ L D +G + + FF+      KN   EG ++   G+++  
Sbjct: 63  EGEVMK-ADLVMGRRRSLQVTLKDRSGFLVMRFFHFNAAQ-KNQLTEGARVRCFGEVRPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEA--------VYSLPTGLSVDLFKKIIVEALSRLPV 184
           +      HP Y       VN P + A        VY L  G+     + +  +AL  L  
Sbjct: 121 RAGYEFYHPEY------QVNPPPMPAQGEATLTPVYPLTEGIQQPRVRALCQQALGYLKR 174

Query: 185 LP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQI 238
            P  +W+ ++LL     P I EA  ++H+P          E   PA++RL  +ELLA Q+
Sbjct: 175 YPIRDWLPEELLANYQLPGITEAVELVHSPPANAPVHLLMEGRHPAQQRLVMEELLAHQL 234

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +LL +R+Q +    +P+   G + ++ L  +PFS T +Q   + +I QD+SQ   MLR++
Sbjct: 235 SLLQVRQQVQAREALPLLPTGDLPERFLDLLPFSLTGAQRQVMTEIRQDLSQPVPMLRLV 294

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA +A    + AG Q  +MAP  ILA+QHY+  + + +   I +  ++G 
Sbjct: 295 QGDVGSGKTVVAALAALQTIGAGAQVALMAPTEILAEQHYQNFRGWLEPLGIQLAWLSGK 354

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    R++ALE +  G+A ++IGTHALFQ+ + + +L LVIVDEQHRFGV QRL L +K 
Sbjct: 355 IKGKARKEALEAVGSGEATVVIGTHALFQEDVAFSRLALVIVDEQHRFGVHQRLALREKG 414

Query: 419 T----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                APH L+MTATPIPRTL +++  D+D S I E P GRKPI+T+ IP +R D+V +R
Sbjct: 415 VGGTMAPHQLIMTATPIPRTLAMSAYADLDTSVIDELPPGRKPIETIAIPDSRRDDVTDR 474

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++    EG++AYW+C  IEE +    ++       L E      + ++HGR+   +K +V
Sbjct: 475 VRKACKEGRQAYWVCTLIEESEALQCQAAEGTAQELAERLPDLKVGLVHGRLKAAEKAAV 534

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M+ FKNG   LL+ATTVIEVG+DV +AS+IIIEN E  GLAQLHQLRGRVGRGEE S C+
Sbjct: 535 MEQFKNGELDLLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGEEASFCV 594

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+YHPPLS N   RL  L++++DGF IAE+DL+ R  GE+LG +Q+GM +F +A  E   
Sbjct: 595 LMYHPPLSMNGKARLQALRDSQDGFKIAEKDLEIRGPGEVLGTRQTGMMQFRLADFERDK 654

Query: 654 SLLEIARKDAKHILTQ 669
             +E  RK A  ++ Q
Sbjct: 655 GWIEPIRKMAPPLMKQ 670


>gi|302383040|ref|YP_003818863.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193668|gb|ADL01240.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 696

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 278/698 (39%), Positives = 405/698 (58%), Gaps = 16/698 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFA +S+ +GVG +    + K+            D+LF  P   I R     
Sbjct: 1   MRPQILFPLFAEVSSLKGVGPRTLPLVQKLAG------PLVRDVLFLAPVGVITRRRTNA 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
              I  E  V +   +        +   P K+  +D TG + L++F    + +      G
Sbjct: 55  ADAIEGE--VGVFDVVVDRMIAPGRPGVPLKVRASDETGFVHLIWFGGSPQHIDRQLPRG 112

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            +  V+GK+++    + +VHP +I    +    P +E VY    GL+    +K+ + AL+
Sbjct: 113 ERRLVSGKVERFNGEVQIVHPDWIVPLDKGEEIPSVEPVYPATQGLASRNVRKLALGALA 172

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
             P   EW +   L ++ +P    A + +H P    D    SPARERLA+DELLA Q+AL
Sbjct: 173 VTPDPDEWQDAAWLARRRWPGWKAALDALHAPTGEADLSPDSPARERLAFDELLAHQLAL 232

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
              R+  +     P+  E   +  +L  +PFS T +Q  A+ +I +D++   +M R+LQG
Sbjct: 233 ARRRRARQITPA-PVIRENAASAALLAALPFSLTGAQAQAMAEIRRDLASGEQMGRLLQG 291

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT VA +AMA A  AG QA +MAP  ILA+QH++ +    +   +   ++TG   
Sbjct: 292 DVGSGKTAVAALAMADAAGAGFQAALMAPTEILARQHFQRLAPMLEAAGLPTILLTGRDT 351

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT- 419
            A RR  L  +A G+A I IGTHALFQD++++ +L L I+DEQHRFGV +R +L  KA  
Sbjct: 352 AAERRARLAALASGEARIAIGTHALFQDAVRFDRLALAIIDEQHRFGVNERARLQAKADP 411

Query: 420 ---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                H+L M+ATPIPRTL LT  G++++S++TEKP GR P+ T ++P+ RI EV  RLK
Sbjct: 412 RIGGVHLLTMSATPIPRTLELTQYGELEVSRLTEKPPGRTPVATAVLPLARIGEVAARLK 471

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             +  G +AYWICP + E + S+  +  ER   L       I + HG+M   ++E+VM  
Sbjct: 472 AAVETGAQAYWICPLVAESEASDLAAAEERARDLRRILNIEIGLAHGQMPGAEREAVMAD 531

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G   +L+ATTV+EVG+DV +A+I++IE+A+ FGLAQLHQLRGRVGRG + S+CILLY
Sbjct: 532 FADGRLPVLVATTVVEVGVDVPNATIMVIEHADRFGLAQLHQLRGRVGRGAKSSACILLY 591

Query: 597 ---HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
                 L + +  RL  L+ TEDGF IAEED + R  G+ LG++QSG P +  A P  H 
Sbjct: 592 GGQDGALGETARERLETLRRTEDGFEIAEEDFRLRGGGDPLGLRQSGFPAYRFADPIRHR 651

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           SL+  A  DA+ +L +DPDL S RGQ+I++L  L+ + 
Sbjct: 652 SLMLAASDDARMVLGRDPDLASPRGQAIQVLEALFDWR 689


>gi|329113369|ref|ZP_08242150.1| ATP-dependent DNA helicase RecG [Acetobacter pomorum DM001]
 gi|326697194|gb|EGE48854.1| ATP-dependent DNA helicase RecG [Acetobacter pomorum DM001]
          Length = 665

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 255/673 (37%), Positives = 402/673 (59%), Gaps = 21/673 (3%)

Query: 41  FIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE 100
            IDLLF  P S  DR  RP ++++  + I T+TG +    S   + R+P++++++D T  
Sbjct: 1   MIDLLFCLPESITDRRLRPTLAQLRPDTIATVTGVVQDIRSPAPRTRQPWRVMIDDATSV 60

Query: 101 ITLLFF--YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
           + + FF  ++  +++K     G  I ++GK+++  +++ +  P Y+   +Q    PL++ 
Sbjct: 61  LEVAFFSPWQAKQVVK-----GESIALSGKVERFGDKLTITSPDYLVPANQIERIPLLDP 115

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---- 213
           V+ L  GL     +  +  AL  LP  LPEW +K L+++K++P  A A + +H P     
Sbjct: 116 VWPLTAGLFTGQVRMAMAAALRLLPPTLPEWHDKALIKQKNWPDFATALSWVHFPDTIPD 175

Query: 214 KAKDFEW---TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            A+   W    + A+ RLA DELLA Q+A+ + ++  +   G  +N +G + ++ L +  
Sbjct: 176 SAQGDAWHGSRTRAQARLACDELLADQLAMRIAQQASRARPGRSLNGDGTLQKQALASFG 235

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
              T  Q+  +++I  DM+  + M R+LQGDVG+GKTLVAL+AM  AVEAG QA +MAP 
Sbjct: 236 HELTYGQKHVLREIETDMATPHCMSRLLQGDVGAGKTLVALMAMLRAVEAGTQAALMAPT 295

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA+QH    ++ +    + V  ++ ++    R++ L+ IA G A +++GTHAL QD +
Sbjct: 296 EILARQHAATFRRLSP---VPVAFLSSSVKGKARKQTLQDIADGTAKLVVGTHALVQDGV 352

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L ++DEQHRFGV QRL L +K     +L+MTATPIPRTL+LT  G++ IS++  
Sbjct: 353 KFADLGLAVIDEQHRFGVDQRLALVEKGHETDMLVMTATPIPRTLLLTRFGEMQISRLEG 412

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           KPAGRKP+ T +  +   ++V+  +   L +G + +W+CP + E +  +  +   R  +L
Sbjct: 413 KPAGRKPVHTSLHSLGNFEDVLAGIGRALDKGAQIFWVCPLVSESEAMDLAAAEARHAAL 472

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            E F   I + HG+     +E V+ +F NG  ++L+ATTVIEVG+DV  A+I++IE+AE 
Sbjct: 473 VERFGDKIGLAHGQQDANVREEVLQAFSNGETRMLVATTVIEVGVDVPSATIMVIEHAER 532

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FGLAQLHQLRGRVGRG + S C++L+   L   +  RLS LK TEDGFLIA+ED + R  
Sbjct: 533 FGLAQLHQLRGRVGRGADASFCLMLHDEGLGLTARRRLSCLKETEDGFLIADEDFRLRGG 592

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ---SIRILLYL 687
           GE  G +QSG+P + +A   L D LL+ A  +A  IL   P  ++       + RILL L
Sbjct: 593 GEATGRRQSGLPDYRMAPEMLVDMLLDTAHDEATEILPDGPPTSTPEKNLRVAARILLAL 652

Query: 688 YQYNEAFQFIRAG 700
           +   +A +    G
Sbjct: 653 FNKTDAARIFSGG 665


>gi|58038545|ref|YP_190509.1| ATP-dependent DNA helicase RecG [Gluconobacter oxydans 621H]
 gi|58000959|gb|AAW59853.1| ATP-dependent DNA helicase RecG [Gluconobacter oxydans 621H]
          Length = 716

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/707 (36%), Positives = 411/707 (58%), Gaps = 29/707 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE-- 63
           L PLFA L++  G+G +++  L KI     A   R +DLLF  P   +DR     +++  
Sbjct: 27  LAPLFASLTSLPGIGPRHATLLEKI-----AGGRRVLDLLFTLPERVVDRRILRTVADGY 81

Query: 64  -ISEERIVTITGYISQHSSFQLQKR----RPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            ++   I+T     +      L+K     +P  I   D TG++ L+FF  +      +  
Sbjct: 82  NLAPGEILT-----AHVRVLALRKAGRPGQPSIIRTEDDTGKLDLVFFQTRNMPSPTI-- 134

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G ++ V+GK    +  + M  P ++   ++  +FP +E V+ L  GL     +K +  A
Sbjct: 135 -GAELLVSGKTGTFQGELTMPQPDHVVSWAKRDSFPSLEPVWPLTAGLFPYTVRKAMRAA 193

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK-AKDFEWTSPAR----ERLAYDEL 233
           L+ LP LPEW++  L+ ++ +PS  +A  ++ +P     +  W  P R     RLA DEL
Sbjct: 194 LALLPDLPEWLDPALVTQRKWPSFTQALRLMQSPEIIPPEIAW-EPVRNRALSRLAADEL 252

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA Q+   L R + ++  G      G++  ++LR     PT +Q  AI +I  D+S    
Sbjct: 253 LADQLCFGLARLKARERHGRSFPGTGELQAEMLRRFGHKPTHAQTLAIAEIAADLSASTP 312

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M+R+LQGDVG+GKT VA+ AM   VE+G QA +MAP  ILA+QH+E + +      +   
Sbjct: 313 MMRLLQGDVGAGKTFVAMNAMLQTVESGAQAALMAPTEILARQHFETLSRLCPTECVY-- 370

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            ++G +  A RRK L  IA G A I++GTHALFQD + ++ L L ++DEQHRFGV+QR+ 
Sbjct: 371 -LSGTIKGAARRKTLAAIADGTAKIVVGTHALFQDGVTFHDLGLAVIDEQHRFGVRQRMN 429

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L+ K  A  +L+MTATPIPRTL L   G++ +S++  KP GR+PI+T +  ++ +D V+ 
Sbjct: 430 LSAKGEATDILVMTATPIPRTLQLMEWGEMSVSRLDSKPPGRQPIRTTLHSMDSLDSVLA 489

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            +   L +G + +W+CP IE  +     +  ER+ SL + F   + + HG+     ++  
Sbjct: 490 GISRALRDGVQVFWVCPLIENSETQAAAAAEERWASLEQRFEGLVGLAHGKQDITVRQEA 549

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +D F+ G  +LL+ATTVIEVG+D+  AS+++IE AE FGLAQLHQLRGRVGRG + S C+
Sbjct: 550 LDRFRLGKTRLLVATTVIEVGVDIPAASVMVIEQAERFGLAQLHQLRGRVGRGSKQSFCL 609

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LL+    +  +  RLS+L++T DGFLIA+ED + R  G+I G +QSG+P F +AQ     
Sbjct: 610 LLHDRAATPTAVRRLSLLRDTNDGFLIADEDYRIRGGGDIAGDRQSGLPGFRLAQGARLS 669

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            LL   ++D++  + ++P L   RG ++R+LL ++  N+  + + +G
Sbjct: 670 LLLTAMQQDSEREIARNPHLEGPRGHALRLLLEIFDRNDPDRLLISG 716


>gi|27464917|gb|AAO16242.1| ATP-dependent DNA helicase RecG [Acetobacter aceti]
          Length = 716

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 260/707 (36%), Positives = 411/707 (58%), Gaps = 29/707 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE-- 63
           L PLFA L++  G+G +++  L KI     A   R +DLLF  P   +DR     +++  
Sbjct: 27  LAPLFASLTSLPGIGPRHATLLEKI-----AGGRRVLDLLFTLPERVVDRRILRTVADGY 81

Query: 64  -ISEERIVTITGYISQHSSFQLQKR----RPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            ++   I+T    +       L+K     +P  I   D TG++ L+FF  +      +  
Sbjct: 82  NLAPGEILTAHVRV-----LALRKAGRPGQPSIIRTEDDTGKLDLVFFQTRNMPSPTI-- 134

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G ++ V+GK    +  + M  P ++   ++  +FP +E V+ L  GL     +K +  A
Sbjct: 135 -GAELLVSGKTGTFQGELTMPQPDHVVSWAKRDSFPSLEPVWPLTAGLFPYTVRKAMRAA 193

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK-AKDFEWTSPAR----ERLAYDEL 233
           L+ LP LPEW++  L+ ++ +PS  +A  ++ +P     +  W  P R     RLA DEL
Sbjct: 194 LALLPDLPEWLDPALVTQRKWPSFTQALRLMQSPEIIPPEIAW-EPVRNRALSRLAADEL 252

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA Q+   L R + ++  G      G++  ++LR     PT +Q  AI +I  D+S    
Sbjct: 253 LADQLCFGLARLKARERHGRSFPGTGELQAEMLRRFGHKPTHAQTLAIAEIAADLSASTP 312

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M+R+LQGDVG+GKT VA+ AM   VE+G QA +MAP  ILA+QH+E + +      +   
Sbjct: 313 MMRLLQGDVGAGKTFVAMNAMLQTVESGAQAALMAPTEILARQHFETLSRLCPTECVY-- 370

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            ++G +  A RRK L  IA G A I++GTHALFQD + ++ L L ++D+QHRFGV+QR+ 
Sbjct: 371 -LSGTIKGAARRKTLAAIADGTAKIVVGTHALFQDGVTFHDLGLAVIDQQHRFGVRQRMN 429

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L+ K  A  +L+MTATPIPRTL L   G++ +S++  KP GR+PI+T +  ++ +D V+ 
Sbjct: 430 LSAKGEATDILVMTATPIPRTLQLMEWGEMSVSRLDSKPPGRQPIRTTLHSMDSLDSVLA 489

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            +   L +G + +W+CP IE  +     +  ER+ SL + F   + + HG+     ++  
Sbjct: 490 GISRALRDGVQVFWVCPLIENSETQAAAAAEERWASLEQRFEGLVGLAHGKQDITVRQEA 549

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +D F+ G  +LL+ATTVIEVG+D+  AS+++IE AE FGLAQLHQLRGRVGRG + S C+
Sbjct: 550 LDRFRLGKTRLLVATTVIEVGVDIPAASVMVIEQAERFGLAQLHQLRGRVGRGSKQSFCL 609

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LL+    +  +  RLS+L++T DGFLIA+ED + R  G+I G +QSG+P F +AQ     
Sbjct: 610 LLHDRAATPTAVRRLSLLRDTNDGFLIADEDYRIRGGGDIAGDRQSGLPGFRLAQGARLS 669

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            LL   ++D++  + ++P L   RG ++R+LL ++  N+  + + +G
Sbjct: 670 LLLTAMQQDSEREIARNPHLEGPRGHALRLLLEIFDRNDPDRLLISG 716


>gi|209542293|ref|YP_002274522.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209529970|gb|ACI49907.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 709

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 265/706 (37%), Positives = 413/706 (58%), Gaps = 20/706 (2%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           R   L PL APL +  GVG   +  L++ +        R IDLLF+ P S +DR YRP +
Sbjct: 17  RGDNLGPLLAPLGSLPGVGPALAKLLARAVRG-----QRVIDLLFHLPESVVDRRYRPSL 71

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            +    R+ T+   + +  +     R+P+++L++DG G   L+FF         V   G 
Sbjct: 72  RDAVPGRVATMQVTVRRIDAPARGTRQPWRVLVSDGAGTAELVFFSSYQARRMRV---GS 128

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
            + V+G +    +R+ M HP +I         P +E V+ L  GL     +  + +A   
Sbjct: 129 AVAVSGTLDAFGDRLQMAHPDHIVPGGDIDRIPALEPVWPLTAGLFPRHVRAALHQAFLP 188

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSP---ARERLAYDELL 234
            P LPEW++  L+ ++ +P+   A   +H P    D      W +    AR+RLA DELL
Sbjct: 189 FPPLPEWLDSVLVARRHWPNFETALRQLHCPEAFPDLLRGDAWQAAGERARQRLACDELL 248

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A Q+A+   R++ +   G  I   G +  + L    ++PT++Q  A+++I  D++    M
Sbjct: 249 AEQVAMSEARRRNRNRPGRSIVGTGTLRAEALARFGYTPTRAQHRAVREIDSDLAASYPM 308

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           +R+LQGDVG+GKTLVA++AM AA EAG QAV+MAP  ILA+QH    +K      + V  
Sbjct: 309 MRLLQGDVGAGKTLVAMLAMLAAAEAGHQAVLMAPTEILARQHLATFQKLAP---VPVAF 365

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           ++G++    RR  LE IA G+A +++GTHALFQD + +  L L ++DEQHRFGV+QRL L
Sbjct: 366 LSGSVKGRARRTVLEDIASGRAPLVVGTHALFQDKVVFDDLALAVIDEQHRFGVEQRLLL 425

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +K     +L+MTATPIPRTL+LT  G++ +S++ EKPAGR P++T +  +  + +V++ 
Sbjct: 426 GEKGDRADILVMTATPIPRTLLLTQWGEMQVSRLNEKPAGRLPVRTSLHAMASLGDVLDG 485

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           +   ++ G   +W+CP + E +  +  +   RF +L E F   + + HG+     +E+ +
Sbjct: 486 IGRAIARGALVFWVCPLVTESEAMDLAAAEARFAALTERFGPIVGLAHGQQDIAVREAAI 545

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G  K+L+ATTVIEVG+D+  A+I++IE+AE FGLAQLHQLRGRVGRG + S C+L
Sbjct: 546 ADFAAGRTKILVATTVIEVGVDIPAATIMVIEHAERFGLAQLHQLRGRVGRGRDESFCLL 605

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           L+   L   +  RL++L++TEDGFLIA+ED + R  G++ G +QSG+P   +A     D 
Sbjct: 606 LHDDALGSTARRRLALLRDTEDGFLIADEDFRLRGGGDVTGRRQSGLPDLRLATGARLDL 665

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           LL IA +DA+ +   +   +  R  +I  LL L+  ++A + +R+G
Sbjct: 666 LLTIAAQDAQRV--AEGGASESRRNAIAQLLELFDRHDAARILRSG 709


>gi|225630537|ref|YP_002727328.1| ATP-dependent DNA helicase RecG [Wolbachia sp. wRi]
 gi|225592518|gb|ACN95537.1| ATP-dependent DNA helicase RecG [Wolbachia sp. wRi]
          Length = 673

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 279/687 (40%), Positives = 393/687 (57%), Gaps = 30/687 (4%)

Query: 14  STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73
           S    + K +S  L K+  CG     R +DLLFY P S++DR      +++ E   +T  
Sbjct: 9   SRLENIPKFHSTILPKL--CGG---DRVMDLLFYRPLSYVDRSKSLPDAQVGE--FITFI 61

Query: 74  GYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
             + +H S    + RPYKI++   +  I ++FF    + L  +F  G  + ++GK++K  
Sbjct: 62  AKVYEHQSPTF-RGRPYKIVVESESQYIFIVFFNYSVKYLYKLFPIGASVIISGKLEKFA 120

Query: 134 NRIIMVHPHYIFHNSQDVN----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
               + HP Y+   S D+N       IE VY L  G++      II   L  LP LPEWI
Sbjct: 121 EHWQITHPDYV---SLDINQFKKIACIEPVYQLCRGITNKRIGNIISSNLKELPDLPEWI 177

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
           +  L+++K + S  E+   +H P    + E     R+RLAYDEL A Q+AL L RK   K
Sbjct: 178 DDTLIKQKKWLSWRESIIKLHRPSSLAEAE---VCRKRLAYDELFAYQLALKLARKNHVK 234

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E G    +  K  +++L  + F  T  Q  AI +I +    K RM+ +LQGDVGSGKT+V
Sbjct: 235 ERGREFIILSKYKEQVLNELSFQLTNDQTRAIDEISERQKSKYRMISLLQGDVGSGKTVV 294

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           AL AM   VE   QA +MAP  ILA+QHY +I++    T I V ++TG   +  R+  + 
Sbjct: 295 ALFAMINVVENNMQAALMAPTTILAEQHYNWIEEVLSCTDIKVALLTGKTSRKERKIIMN 354

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +A G  +I+IGTHALFQ ++ +  L L ++DEQ RFGV QR +L  K     +L +TAT
Sbjct: 355 ELASGVLNIVIGTHALFQANVTFKNLGLAVIDEQQRFGVMQRNRLVGKGENADILFVTAT 414

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL     GD++ S + EKP  R PIKTV + I+R+ +VIE+LK  ++ G+KAYWIC
Sbjct: 415 PIPRTLQQAMYGDVECSILKEKPKSRLPIKTVTMNISRVPDVIEKLKGAINRGEKAYWIC 474

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           P IEE +E+N  +   RF  L + F   + IIHG+++   K+ VM SFK     LL+ATT
Sbjct: 475 PYIEENEETNIAAAEMRFQELQKTFLDKVGIIHGKLTQEQKDQVMFSFKRNEFSLLVATT 534

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVGIDV DA+I+IIENAE FGL+QLHQLRGRVGRG + S C+LLY      +S ++L 
Sbjct: 535 VIEVGIDVPDATIMIIENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYDNLSKSSS-SKLK 593

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           ++  ++DGF IAE D+  R  G+ILG KQSG  +F  A       LL +A  +AK  +  
Sbjct: 594 IMCESQDGFYIAERDMMLRGSGDILGTKQSGCMEFKFADLYQDKELLNLAYNNAKGAMA- 652

Query: 670 DPDLTSVRGQSIRILLYLYQYNEAFQF 696
                        +LL +++Y     F
Sbjct: 653 ----------DFELLLDIFEYRSRLHF 669


>gi|296535470|ref|ZP_06897659.1| DNA helicase RecG [Roseomonas cervicalis ATCC 49957]
 gi|296264191|gb|EFH10627.1| DNA helicase RecG [Roseomonas cervicalis ATCC 49957]
          Length = 693

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 263/698 (37%), Positives = 411/698 (58%), Gaps = 25/698 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDR-HYRPKISEISE 66
           PLFAPL +   V ++    L+ ++  G     R +DLLF+ P  + DR + +P+  EI+ 
Sbjct: 16  PLFAPLDSLP-VPEEKRKRLAALVEGG-----RVMDLLFHLPERYQDRRNAQPREGEIAT 69

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEM---LKNVFFEGRKI 123
              V + G  +  S  Q     P+ +  +   G I L++F R++ +   L   + EG   
Sbjct: 70  -LPVRVLGIAAPGSPVQ-----PWAVRCDSEDGPIDLIYFGRRSWLGAWLSRTYPEGAPR 123

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V+G++K+ ++R  M  P ++     DV  P ++ ++ L  GL      + + +AL+ LP
Sbjct: 124 RVSGRVKRYRDRWQMDAPDFV--EPPDV-IPELQPIWPLAKGLGQRDLGRAMADALALLP 180

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            LPEW +  LL ++ +P    A + I  P    D    +P R+RLAYDELLAGQ+A+ L+
Sbjct: 181 ELPEWQDATLLARRRWPGFGAALHAIQAPEAVPD---DTP-RDRLAYDELLAGQLAVGLV 236

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+   +  G  +  + ++    L      PT  Q  AI +I  D++   RMLR+LQGDVG
Sbjct: 237 RRTVLQRPGRALTGDSRLRAAALHAFGHQPTPGQARAIAEIDADLAAPRRMLRLLQGDVG 296

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKTLVA++AM  AVE G QA +MAP  +LA+QH   ++K      +   ++ G++    
Sbjct: 297 AGKTLVAVMAMLRAVEGGAQAALMAPTELLARQHLRTLEKLAGAAGVPCALLAGSVKGKE 356

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           R++ L  +A G   +++GTHAL ++ + +  L L +VDEQHRFGV QRL LT+K T   V
Sbjct: 357 RKRVLAGLADGAIPLVVGTHALIEEGVAFRDLGLAVVDEQHRFGVAQRLALTEKGTT-DV 415

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL+LT  G++ +S++   PAGR+PI T I+   R +E++ RL+   +EG 
Sbjct: 416 LVMTATPIPRTLLLTQWGEMAVSRLEGLPAGRQPIVTRIVSRERREELVARLRAAFAEGH 475

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +AYW+   +EE ++ +  +    F  L   F   + + HG      +E+ +  F  G  +
Sbjct: 476 RAYWVVRAVEEGEKHDNAAAETTFADLAAIFGDKVRLAHGAQKLEVREAALHDFAAGRAQ 535

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LL+ATTV+EVG+DV +A+I+IIE AE FGLA LHQLRGRVGRG   S C+LL    L+ +
Sbjct: 536 LLVATTVVEVGVDVPEATIMIIEQAERFGLAALHQLRGRVGRGRAQSFCLLLPSAELNDS 595

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              RL+VL+ T+DGF+IA+ DL+ R  G+ LG++Q+G     +A P+ H  L+ +A +DA
Sbjct: 596 EQRRLAVLRETQDGFVIADADLEYRGGGDALGVRQAGRIGRRLADPQRHGGLVRMAHQDA 655

Query: 664 KHILTQDPDLTSV-RGQSIRILLYLYQYNEAFQFIRAG 700
             +L +DP L++  RG++ R+LL L+ ++ +   + AG
Sbjct: 656 ALLLEKDPALSATPRGRAARLLLALFGHDLSLAPLAAG 693


>gi|311693200|gb|ADP96073.1| DNA helicase, ATP-dependent, RecG [marine bacterium HP15]
          Length = 691

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 263/675 (38%), Positives = 398/675 (58%), Gaps = 33/675 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L+K+        T   DLLF+ P  + DR     +  +    +  
Sbjct: 8   PVTQLKGVGNALAEKLAKL------GITSLQDLLFHLPHRYEDRTRVIPMGSLRIGDVAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + +   + +RR  ++ L D +G + + FF+      KN   EG ++   G+++ 
Sbjct: 62  VEGEVMK-ADLIMGRRRSLQVTLRDNSGFLVMRFFHFNAAQ-KNQLSEGARVRCFGEVRP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA--------VYSLPTGLSVDLFKKIIVEALSRLP 183
            +      HP Y       +N P + A        VY L  G+     + +  +AL  L 
Sbjct: 120 GRAGYEFYHPEY------QINPPPMPAEGDATLTPVYPLTEGIQQPRVRSLCQQALGYLD 173

Query: 184 VLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQ 237
             P  +W+  +LL +   P I EA  ++H+P  +       E   PA++RL  +ELLA Q
Sbjct: 174 RFPIRDWLPGNLLAEYQLPGITEAVQLVHSPPASAPVNLLMEGRHPAQQRLVMEELLAHQ 233

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           ++LL +R+Q +    +P+   G + ++ L ++PF+ T +Q   + DI QD+SQ   MLR+
Sbjct: 234 LSLLQVREQIQAREALPLLPTGDLPERFLDSLPFALTGAQRHVLADIRQDLSQPLPMLRL 293

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA +A   A+ AG Q  +MAP  ILA+QH++  + + +   I +  ++G
Sbjct: 294 VQGDVGSGKTVVAALAALQAIGAGAQVALMAPTEILAEQHFQNFRAWLEPLGIRLAWLSG 353

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +    R + LE +  G A ++IGTHALFQD +++++L LVIVDEQHRFGV QRL L +K
Sbjct: 354 KVKGKTRTETLEAVQSGDAAVVIGTHALFQDDVRFHRLALVIVDEQHRFGVHQRLALREK 413

Query: 418 AT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                 APH L+MTATPIPRTL +++  D+D S I E P GRKPI+T++IP +R ++VIE
Sbjct: 414 GVGGSLAPHQLIMTATPIPRTLAMSAYADLDTSVIDELPPGRKPIETIVIPDSRREDVIE 473

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           R++    EG++AYW+C  IEE +    ++       L E      + ++HGR+   +K +
Sbjct: 474 RVRGACREGRQAYWVCTLIEESEALQCQAAEVTAQELAERLPDLKVGLVHGRLKAQEKAA 533

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM+ FK G   LL+ATTVIEVG+DV +AS+IIIEN E  GLAQLHQLRGRVGRGE+ S C
Sbjct: 534 VMEQFKVGELDLLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGEQASFC 593

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +L+YHPPLS N   RL  L++++DGF IAE+DL+ R  GE+LG +Q+GM +F +A  E  
Sbjct: 594 VLMYHPPLSANGKARLQALRDSQDGFFIAEKDLEIRGPGEVLGTRQTGMMQFRLADFERD 653

Query: 653 DSLLEIARKDAKHIL 667
              +E  RK A  ++
Sbjct: 654 KGWIEPVRKMAPGLM 668


>gi|99034953|ref|ZP_01314758.1| hypothetical protein Wendoof_01000414 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 673

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 280/690 (40%), Positives = 395/690 (57%), Gaps = 36/690 (5%)

Query: 14  STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73
           S    + K +S  L K+  CG     + +DLLFY P S++DR        +S+ R+   T
Sbjct: 9   SRLENIPKFHSAILPKL--CGG---DKVVDLLFYKPLSYVDRS-----KLLSDARVGEFT 58

Query: 74  GYIS---QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            +I+   +H S    + RPYKI++   +  I ++FF    + L  +F  G  + ++GK++
Sbjct: 59  TFIAKVYEHQSPTF-RGRPYKIIVESESQYIFIVFFNYSVKYLYKLFPIGANVIISGKLE 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVN----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           K      + HP Y+   S D+N       IE VY L  G++      II   L  LP LP
Sbjct: 118 KFAEHWQITHPDYV---SLDINQFKEIACIEPVYQLCRGITNKRIGNIISSNLKELPDLP 174

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           EWI+  L+++K + S  E+   +H P    + E     R+RLAYDEL A Q+AL L RK 
Sbjct: 175 EWIDDTLIKQKKWLSWRESIIKLHRPSSLVEAE---VCRKRLAYDELFAYQLALKLARKN 231

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
             KE G    +  K  +++L  + F  T  Q  AI +I +    K RM+ +LQGDVGSGK
Sbjct: 232 HVKERGREFIILSKYKEQVLNELSFQLTNDQTRAIDEISERQKSKYRMISLLQGDVGSGK 291

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VAL AM   VE   QA +MAP  ILA+QHY +I++    T I V ++TG   +  R+ 
Sbjct: 292 TVVALFAMINVVENNMQAALMAPTTILAEQHYNWIEEVLSCTDIKVALLTGKTSRKERKI 351

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            +  +A G  +I+IGTHALFQ ++ +  L L ++DEQ RFGV QR +L  K     +L +
Sbjct: 352 IMNELASGVLNIVIGTHALFQANVTFKNLGLAVIDEQQRFGVMQRNRLVGKGENADILFV 411

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL     GD++ S + EKP  R PIKTV + I+R+ +VIE+LK  ++ G+KAY
Sbjct: 412 TATPIPRTLQQAMYGDVECSILKEKPKSRLPIKTVTMNISRVPDVIEKLKGAINRGEKAY 471

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           WICP IEE +E+N  +   RF  L + F   + IIHG+++   K+ VM SFK     LL+
Sbjct: 472 WICPYIEENEETNIAAAEMRFQELQKTFLDKVGIIHGKLTQEQKDQVMFSFKRNEFSLLV 531

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVGIDV DA+I+IIENAE FGL+QLHQLRGRVGRG + S C+LLY      +S +
Sbjct: 532 ATTVIEVGIDVPDATIMIIENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYDNLSKSSS-S 590

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           +L ++  ++DGF IAE D+  R  G+ILG KQSG  +F  A       LL +A  +AK  
Sbjct: 591 KLKIMCESQDGFYIAERDMMLRGSGDILGTKQSGCMEFKFADLYQDKELLNLAYNNAKGA 650

Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
           +               +LL +++Y     F
Sbjct: 651 MA-----------DFELLLDIFEYRSRLHF 669


>gi|42520662|ref|NP_966577.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410402|gb|AAS14511.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 673

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 280/690 (40%), Positives = 395/690 (57%), Gaps = 36/690 (5%)

Query: 14  STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73
           S    + K +S  L K+  CG     + +DLLFY P S++DR        +S+ R+   T
Sbjct: 9   SRLENIPKFHSAILPKL--CG---RDKVVDLLFYKPLSYVDRS-----KLLSDARVGEFT 58

Query: 74  GYIS---QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            +I+   +H S    + RPYKI++   +  I ++FF    + L  +F  G  + ++GK++
Sbjct: 59  TFIAKVYEHQSPTF-RGRPYKIVVESESQYIFIVFFNYSVKYLYKLFPIGANVIISGKLE 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVN----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           K      + HP Y+   S D+N       IE VY L  G++      II   L  LP LP
Sbjct: 118 KFAEHWQITHPDYV---SLDINQFKEIACIEPVYQLCRGITNKRIGNIISSNLKELPDLP 174

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           EWI+  L+++K + S  E+   +H P    + E     R+RLAYDEL A Q+AL L RK 
Sbjct: 175 EWIDDTLIKQKKWLSWRESIIKLHRPSSLVEAE---VCRKRLAYDELFAYQLALKLARKN 231

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
             KE G    +  K  +++L  + F  T  Q  AI +I +    K RM+ +LQGDVGSGK
Sbjct: 232 HVKERGREFIILSKYKEQVLNELSFQLTNDQTRAIDEISERQKSKYRMISLLQGDVGSGK 291

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VAL AM   VE   QA +MAP  ILA+QHY +I++    T I V ++TG   +  R+ 
Sbjct: 292 TVVALFAMINVVENNMQAALMAPTTILAEQHYNWIEEVLSCTDIKVALLTGKTSRKERKI 351

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            +  +A G  +I+IGTHALFQ ++ +  L L ++DEQ RFGV QR +L  K     +L +
Sbjct: 352 IMNELASGVLNIVIGTHALFQANVTFKNLGLAVIDEQQRFGVMQRNRLVGKGENADILFV 411

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL     GD++ S + EKP  R PIKTV + I+R+ +VIE+LK  ++ G+KAY
Sbjct: 412 TATPIPRTLQQAMYGDVECSILKEKPKSRLPIKTVTMNISRVPDVIEKLKGAINRGEKAY 471

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           WICP IEE +E+N  +   RF  L + F   + IIHG+++   K+ VM SFK     LL+
Sbjct: 472 WICPYIEENEETNIAAAEMRFQELQKTFLDKVGIIHGKLTQEQKDQVMFSFKRNEFSLLV 531

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVGIDV DA+I+IIENAE FGL+QLHQLRGRVGRG + S C+LLY      +S +
Sbjct: 532 ATTVIEVGIDVPDATIMIIENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYDNLSKSSS-S 590

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           +L ++  ++DGF IAE D+  R  G+ILG KQSG  +F  A       LL +A  +AK  
Sbjct: 591 KLKIMCESQDGFYIAERDMMLRGSGDILGTKQSGCMEFKFADLYQDKELLNLAYNNAKGA 650

Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
           +               +LL +++Y     F
Sbjct: 651 MA-----------DFELLLDIFEYRSRLHF 669


>gi|226373858|gb|ACO52152.1| RecG [Wolbachia endosymbiont of Armadillidium vulgare]
          Length = 676

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 277/684 (40%), Positives = 396/684 (57%), Gaps = 24/684 (3%)

Query: 14  STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73
           S    + K +S  L K+  CG     R +DLLFY P S++DR      ++I E       
Sbjct: 12  SKLGNIPKFHSAILPKL--CGG---DRVMDLLFYRPLSYVDRSKSLLDAQIGEFTTFMAK 66

Query: 74  GYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
            Y  Q  +F   + RPYK+++   +  + ++FF    + L  +F  G  + ++GK++K  
Sbjct: 67  VYEHQPPTF---RGRPYKVVVESESQYVFIVFFNYSIKYLHKLFPIGANVIISGKLEKFA 123

Query: 134 NRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192
               + HP Y+  N SQ      IE +Y L  G++    + II   L  LP LPEWI+  
Sbjct: 124 EHWQITHPDYVSLNISQFEEIACIEPIYQLCRGITNKSIRNIINSNLEGLPDLPEWIDGT 183

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
           L+++K + +  E+   +H P    + E     RERLAYDEL A Q+AL   R+   K+ G
Sbjct: 184 LIKQKKWLNWKESIIRLHRPSSLAEAE---VCRERLAYDELFAYQLALKFARENHVKKEG 240

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
               +  K  +++L  +PF  T  Q  AI +I +    K RM+ +LQGDVGSGKT+VAL 
Sbjct: 241 REFVILSKYKEQVLNGLPFQLTNDQIRAIDEIAERQKSKYRMVSLLQGDVGSGKTVVALF 300

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           AM   VE   QA +MAP  ILA+QHY +I++    T I V ++TG   +  RR  +  +A
Sbjct: 301 AMLNVVENNMQAALMAPTTILAEQHYNWIEEALSCTDIKVALLTGKTSRKERRTIMNELA 360

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            G  +I+IGTH LFQ ++ +  L L ++DEQ RFGV QR +L  K   P +L +TATPIP
Sbjct: 361 SGVLNIVIGTHTLFQANVTFKNLGLAVIDEQQRFGVMQRNRLVGKGENPDILFVTATPIP 420

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL     GD++ S + EKP  R PIKTV + I ++ ++I++LK  ++ G+KAYWICP I
Sbjct: 421 RTLQQAMYGDVECSILKEKPKSRLPIKTVTMNIKKVPDIIKKLKDAINRGEKAYWICPYI 480

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           EE +E N  +   RF  L + F   I+IIHG+++   K+ VM SFK     LL++TTVIE
Sbjct: 481 EENEELNIAAAEMRFQELQKTFFDKISIIHGKLTQEQKDQVMFSFKRNEFSLLVSTTVIE 540

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VGIDV DA+I+IIENAE FGL+QLHQLRGRVGRG + S C+LLY   LSK+S ++L ++ 
Sbjct: 541 VGIDVPDATIMIIENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYD-NLSKSSSSKLKIMC 599

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            ++DGF IAE+D+  R  G+ILGIKQSG  +F  A       LL +A  +AK ++     
Sbjct: 600 ESQDGFYIAEKDMMLRGSGDILGIKQSGYMEFKFADLYKDRELLNLAYNNAKGVMA---- 655

Query: 673 LTSVRGQSIRILLYLYQYNEAFQF 696
                     +LL +++Y     F
Sbjct: 656 -------DFELLLDIFEYRSRLHF 672


>gi|312882900|ref|ZP_07742632.1| ATP-dependent DNA helicase RecG [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369419|gb|EFP96939.1| ATP-dependent DNA helicase RecG [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 692

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 272/678 (40%), Positives = 403/678 (59%), Gaps = 30/678 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG K +  L+KI      N  +  DLLF+ PS + DR     I+++       
Sbjct: 9   PLSSLTGVGAKVAEKLTKI----GLNSVQ--DLLFHLPSRYEDRTRVYPIAQLHTGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +     +R+   + ++DG G +TL FF   T  +KN F  G+ +   G+IK+
Sbjct: 63  IQGQVMA-TDVSFGRRKMLTVKVSDGNGTLTLRFF-NFTAAMKNNFTAGKTVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA----VYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
               + +VHP Y FH S+  N P  EA    VY    GL     + +  +AL    +L +
Sbjct: 121 GNYGLEIVHPDYKFHVSE--NKPAAEATLTPVYPTTEGLRQITLRNLTEQALE---LLAK 175

Query: 188 WIEKDLLQKKSF---PSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIAL 240
              K+LL    +    ++ EA + IH P  + D E       PA+ RL  +ELLA  +++
Sbjct: 176 SAVKELLPAGLYDYQTTLGEALHTIHRPPPSIDLEQFDQGQHPAQLRLIIEELLAQNLSM 235

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +R Q ++++   + V   +  K+L  +PFSPTK+Q+  ++++ QD+ + + M+R++QG
Sbjct: 236 LAVRSQGQQDLAQALPVSQNLKPKLLAQLPFSPTKAQDRVVREVEQDLQKNHPMMRLVQG 295

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G + 
Sbjct: 296 DVGSGKTLVAALAGLGALEKGHQVALMAPTELLAEQHALNFTQWLEPLGIQVGWLAGKLK 355

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              ++ ALE+IA+G+  +++GTHALFQD + +  L LVI+DEQHRFGV QRL+L +K   
Sbjct: 356 GKAKQTALEKIANGEMQMVVGTHALFQDQVHFSHLALVIIDEQHRFGVHQRLELREKGQH 415

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D++I R++
Sbjct: 416 DNLYPHQLIMTATPIPRTLAMTAYADLETSIIDELPPGRTPIQTVAIPDTKRDDIIARVQ 475

Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
              + EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM
Sbjct: 476 NACMHEGKQAYWVCTLIDESEVLEAQAAADTSEDLQRKLPELKIGLVHGRMKPAEKQAVM 535

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG+  S C+L
Sbjct: 536 QDFKDNKLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGKVASHCVL 595

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LYH PLSK +  RL+VL+++ DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       
Sbjct: 596 LYHSPLSKTAQKRLAVLRDSNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQG 655

Query: 655 LLEIARKDAKHILTQDPD 672
           L+   +K A+HI    PD
Sbjct: 656 LIPEVQKIARHIHENYPD 673


>gi|126666523|ref|ZP_01737501.1| ATP-dependent DNA helicase RecG [Marinobacter sp. ELB17]
 gi|126628911|gb|EAZ99530.1| ATP-dependent DNA helicase RecG [Marinobacter sp. ELB17]
          Length = 691

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 266/694 (38%), Positives = 413/694 (59%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L K+   G A+     DLLF+ P  + DR     +  +    +  
Sbjct: 8   PVTQLKGVGNALAEKLGKL---GIAS---LQDLLFHLPHRYEDRTRITAMGSLRIGDVAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + +   + +RR  ++ L D +G ++L FF+      KN F EG ++   G+++ 
Sbjct: 62  VEGEVMK-TDIVMGRRRSLQVTLKDHSGFVSLRFFHFNAAQ-KNQFAEGTQVRCFGEVRA 119

Query: 132 LKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            ++   + HP Y  + +   D     +  VY L  G+     + +  +A++ L   P  +
Sbjct: 120 GRSGYELYHPEYQTNPTPMADEGSATLTPVYPLTEGIQQPRVRALCQQAVAYLKRYPIYD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIALLLM 243
           W+   +L     P+I  A  ++H+P      A+  E   PA++RL  +ELLA Q++LL +
Sbjct: 180 WLPPWVLVDYQLPAITAAVELVHSPPASASVAQLLEGRHPAQQRLVMEELLAHQLSLLQV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+Q +    +P+  +G ++++ L ++PF  T +Q   +++I QD++Q   MLR++QGDVG
Sbjct: 240 REQIQTRQALPLLPQGDLSERFLESLPFRLTGAQRQVLQEIRQDLTQPLPMLRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+ AG Q  +MAP  ILA+QHY+    +     I +  ++G +    
Sbjct: 300 SGKTVVAALAALQAIAAGTQVALMAPTEILAEQHYQNFCAWLAPLGIQLTWLSGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R++ALE ++ G A I IGTHALFQ+ + + +L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RQQALEALSSGAAGIAIGTHALFQNDVAFDRLALVIIDEQHRFGVHQRLALREKGAAGEL 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           APH L+MTATPIPRTL +++  D+D S I E P GRKPI+T+++P  R D+V+ER++   
Sbjct: 420 APHQLIMTATPIPRTLAMSAYADLDTSVIDELPPGRKPIETIVVPDGRRDDVVERVRNAC 479

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
             G++AYW+C  IEE +    ++       L E   +  I ++HGR+   +K  VM  FK
Sbjct: 480 QAGRQAYWVCTLIEESEVLQCQAAEVSATELAERLPNLRIGLVHGRLKSQEKAEVMAQFK 539

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   LL+ATTVIEVG+DV +AS+IIIEN E  GLAQLHQLRGRVGRGE+ S C+L+YHP
Sbjct: 540 SGALDLLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGEQASYCVLMYHP 599

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS N   RL  L++++DGF+IAE+DL+ R  GE+LG +Q+GM +F +A  E     +E+
Sbjct: 600 PLSLNGKARLQALRDSQDGFVIAEKDLEIRGPGEVLGTRQTGMMQFRLADFERDQHWIEV 659

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R+ A  ++    + T+V+G   R L    +Y E
Sbjct: 660 VREIAPRLMG---NKTAVQGLVRRWLGEKTRYGE 690


>gi|58584892|ref|YP_198465.1| RecG-like helicase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58419208|gb|AAW71223.1| RecG-like helicase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 682

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 273/696 (39%), Positives = 401/696 (57%), Gaps = 31/696 (4%)

Query: 4   SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
           +FLN      S  +G+ K +   LSK+  CG     + +DLLFY P S++DR        
Sbjct: 11  TFLN------SNLKGISKFHFGILSKL--CGG---NKVMDLLFYRPLSYVDRS-----KS 54

Query: 64  ISEERIVTITGYISQHSSFQ--LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + R+  +T +I++    Q    + RPYKI++   +  I ++FF    + L  +F  G 
Sbjct: 55  LLDARVGELTTFIAKIYEHQPPTFRGRPYKIVVESKSQYIFIVFFNYSIKYLYKLFPIGA 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNS-QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            + ++GK++K      + HP Y+  ++ Q      +E VY L  G++    + II   L 
Sbjct: 115 NVIISGKLEKFAEHWQVTHPDYVLLDTNQFEEIARVEPVYQLCRGITNKSIRNIINSNLK 174

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            LP LPEWI   L+++  + S  E+   +H P    + E     R RLAYDEL A Q+AL
Sbjct: 175 ELPDLPEWIGDTLIKQNKWLSWKESIIKLHRPNSLAEAE---ICRRRLAYDELFAYQMAL 231

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L R+   ++ G    +  K  +++L  + F  T  Q  AI +I +    K RM+ +LQG
Sbjct: 232 KLARENHVRKRGREFTISNKYKEQVLNELSFQLTNDQIRAIDEISERQKSKCRMVSLLQG 291

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL AM   +E   QA +MAP  ILA+QHY +I++    T I + ++TG   
Sbjct: 292 DVGSGKTVVALFAMLNVIENNMQAALMAPTTILAEQHYNWIEEALSYTDIKIALLTGKTT 351

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           +  R+     +A G   IIIGTHALFQ ++ +  L L ++DEQ RFGV QR  L  K   
Sbjct: 352 RKERKIITNELASGILKIIIGTHALFQANVTFKNLGLAVIDEQQRFGVIQRNCLVGKGEN 411

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L +TATPIPRTL     GD++ S + EKP  R PIKTV + I ++ EVIE+LK  ++
Sbjct: 412 ADILFVTATPIPRTLQQAIYGDVECSILREKPKSRLPIKTVAMNIKKLVEVIEKLKSAIN 471

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G+KAYWICP I   +  N  +   RF  L + F + + IIHG+++ + K+ VM SFK  
Sbjct: 472 RGEKAYWICPCIGGNEGLNIAAAEMRFQELQKTFFNKVGIIHGKLTQVQKDQVMFSFKRN 531

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              LL+ATTVIEVGIDV DA+I+IIENAE FGL+QLHQLRGRVGRG + S C+LLY+  +
Sbjct: 532 EFPLLVATTVIEVGIDVPDATIMIIENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYN-NI 590

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           SK+S+++L ++  ++DGF IAE+D+  R  G+ILG+KQSG  +F  A       LL +A 
Sbjct: 591 SKSSFSKLKIMCESQDGFYIAEKDMMLRGSGDILGLKQSGCMEFKFADLYKDRELLNLAY 650

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
            + K  + ++        +S  +LL +++Y     F
Sbjct: 651 NNTKSAIAEN--------KSFELLLDIFEYRSRLHF 678


>gi|212213186|ref|YP_002304122.1| ATP-dependent DNA helicase RecG [Coxiella burnetii CbuG_Q212]
 gi|212011596|gb|ACJ18977.1| ATP-dependent DNA helicase [Coxiella burnetii CbuG_Q212]
          Length = 704

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 281/694 (40%), Positives = 412/694 (59%), Gaps = 51/694 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  + VG      L+      N N     DLLF+ PS + DR     I  I    
Sbjct: 17  LTSPITALKRVGSATRELLA------NLNIHTIQDLLFHLPSRYQDRTRVTAIGAIRHGD 70

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF---YRKTEMLKNVFFEGRKITV 125
            V + G I Q ++     RR     ++DGTG + L F+   Y++   LK     G ++  
Sbjct: 71  QVVVEGKI-QLATITYGGRRNLMCSISDGTGSLILRFYHFNYQQQRQLKM----GLRVRC 125

Query: 126 TGKIKK-LKNRIIMVHPHYIFHNSQDVNFPLI-----EAVYSLPTGLSVDLFKKIIVEAL 179
            G +++  + R+ M+HP Y      D + PLI       +Y    GLS   ++ +I ++L
Sbjct: 126 FGNVRRNYQGRMEMIHPEY---RIVDESTPLIPEDRLTPIYPTTKGLSQTKWRHLINQSL 182

Query: 180 SRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERL 228
           + L        +LPE I   L      P++ EA   +H+P      +       P+++RL
Sbjct: 183 NYLKDPNFVEELLPEEIRTPL----RLPTLTEALFYVHSPPHNAPVDLLQASKHPSQQRL 238

Query: 229 AYDELLAGQIAL----LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
           A++EL+A Q+ L    LL+R Q       PI ++    +K+ R + F  T +Q+  I +I
Sbjct: 239 AFEELVAQQLGLQQWRLLIRTQ-----PAPILIKNNWQEKLKRALTFELTSAQKRVIGEI 293

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
            QD+S+   MLR+LQGDVGSGKT+VA +A+  AVE G Q+ IMAP  +LA+QHY+  +++
Sbjct: 294 NQDLSKPKPMLRLLQGDVGSGKTIVAAMAILKAVENGYQSAIMAPTELLAEQHYQVFQRW 353

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                I V  + G++  + R K L+ IA GQ  +IIGTHALFQ ++ + +L  +++DEQH
Sbjct: 354 FSPLGIRVGWLAGSLTPSAREKTLQEIASGQLSVIIGTHALFQAAVTFQQLAFIVIDEQH 413

Query: 405 RFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           RFGV QRL L +KAT    PH L+MTATPIPRTL +T+  D+D S I E+P GRKPI TV
Sbjct: 414 RFGVHQRLALKEKATPNYHPHQLIMTATPIPRTLAMTAYADLDFSIIDEQPPGRKPITTV 473

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520
           +I  +R D+VIER+K    +GK+ YW+C  I + +     +    F  L + FT+ S+ +
Sbjct: 474 LISNSRRDKVIERIKKNCEQGKQVYWVCTLITDSEVLQCETAEATFKKLQQSFTNLSVGL 533

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHGR++  +K+ VM +FKNG   LL+ATTVIEVG+DV +AS+++IEN+E  GLAQ+HQLR
Sbjct: 534 IHGRLTKEEKDVVMGAFKNGDIDLLVATTVIEVGVDVPNASLMVIENSERLGLAQIHQLR 593

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRGE+ S C+LLY  PLSKN+  RL++L++T+DGFL+A++DL+ R  GE+LG +QSG
Sbjct: 594 GRVGRGEQKSYCVLLYQEPLSKNARARLTLLRDTQDGFLVAQKDLELRGPGELLGARQSG 653

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           + +F IA    H  LL   RK A  IL +  + T
Sbjct: 654 LFRFRIADVIRHQHLLPAVRKAAFLILRRYSEFT 687


>gi|153208666|ref|ZP_01946918.1| ATP-dependent DNA helicase RecG [Coxiella burnetii 'MSU Goat Q177']
 gi|154707134|ref|YP_001425108.1| ATP-dependent DNA helicase RecG [Coxiella burnetii Dugway
           5J108-111]
 gi|212218140|ref|YP_002304927.1| ATP-dependent DNA helicase RecG [Coxiella burnetii CbuK_Q154]
 gi|120575852|gb|EAX32476.1| ATP-dependent DNA helicase RecG [Coxiella burnetii 'MSU Goat Q177']
 gi|154356420|gb|ABS77882.1| ATP-dependent DNA helicase [Coxiella burnetii Dugway 5J108-111]
 gi|212012402|gb|ACJ19782.1| ATP-dependent DNA helicase [Coxiella burnetii CbuK_Q154]
          Length = 704

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 281/694 (40%), Positives = 412/694 (59%), Gaps = 51/694 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  + VG      L+      N N     DLLF+ PS + DR     I  I    
Sbjct: 17  LTSPITALKRVGSATRELLA------NLNIHTIQDLLFHLPSRYQDRTRVTAIGAIRHGD 70

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF---YRKTEMLKNVFFEGRKITV 125
            V + G I Q ++     RR     ++DGTG + L F+   Y++   LK     G ++  
Sbjct: 71  QVVVEGKI-QLATITYGGRRNLMCSISDGTGSLILRFYHFNYQQQRQLKM----GLRVRC 125

Query: 126 TGKIKK-LKNRIIMVHPHYIFHNSQDVNFPLI-----EAVYSLPTGLSVDLFKKIIVEAL 179
            G +++  + R+ M+HP Y      D + PLI       +Y    GLS   ++ +I ++L
Sbjct: 126 FGNVRRNYQGRMEMIHPEY---RIVDESTPLIPEDRLTPIYPTTKGLSQTKWRHLINQSL 182

Query: 180 SRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERL 228
           + L        +LPE I   L      P++ EA   +H+P      +       P+++RL
Sbjct: 183 NYLKDPNFVEELLPEEIRTPL----RLPTLTEALFYVHSPPHNAPVDLLQASKHPSQQRL 238

Query: 229 AYDELLAGQIAL----LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
           A++EL+A Q+ L    LL+R Q       PI ++    +K+ R + F  T +Q+  I +I
Sbjct: 239 AFEELVAQQLGLQQWRLLIRTQ-----PAPILIKNNWQEKLKRALTFELTSAQKRVIGEI 293

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
            QD+S+   MLR+LQGDVGSGKT+VA +A+  AVE G Q+ IMAP  +LA+QHY+  +++
Sbjct: 294 NQDLSKPKPMLRLLQGDVGSGKTIVAAMAILKAVENGYQSAIMAPTELLAEQHYQVFQRW 353

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                I V  + G++  + R K L+ IA GQ  +IIGTHALFQ ++ + +L  +++DEQH
Sbjct: 354 FSPLGIRVGWLAGSLTPSAREKTLQEIASGQLSVIIGTHALFQAAVTFQQLAFIVIDEQH 413

Query: 405 RFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           RFGV QRL L +KAT    PH L+MTATPIPRTL +T+  D+D S I E+P GRKPI TV
Sbjct: 414 RFGVHQRLALKEKATPNYHPHQLIMTATPIPRTLAMTAYADLDFSIIDEQPPGRKPITTV 473

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520
           +I  +R D+VIER+K    +GK+ YW+C  I + +     +    F  L + FT+ S+ +
Sbjct: 474 LISNSRRDKVIERIKKNCEQGKQVYWVCTLITDSEVLQCETAEATFKKLQQSFTNLSVGL 533

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHGR++  +K+ VM +FKNG   LL+ATTVIEVG+DV +AS+++IEN+E  GLAQ+HQLR
Sbjct: 534 IHGRLTKEEKDVVMGAFKNGDIDLLVATTVIEVGVDVPNASLMVIENSERLGLAQIHQLR 593

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRGE+ S C+LLY  PLSKN+  RL++L++T+DGFL+A++DL+ R  GE+LG +QSG
Sbjct: 594 GRVGRGEQKSYCVLLYQEPLSKNARARLTLLRDTQDGFLVAQKDLELRGPGELLGARQSG 653

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           + +F IA    H  LL   RK A  IL +  + T
Sbjct: 654 LFRFRIADVIRHQHLLPAVRKAAFLILRRYSEFT 687


>gi|29653656|ref|NP_819348.1| ATP-dependent DNA helicase RecG [Coxiella burnetii RSA 493]
 gi|161830062|ref|YP_001596254.1| ATP-dependent DNA helicase RecG [Coxiella burnetii RSA 331]
 gi|29540918|gb|AAO89862.1| ATP-dependent DNA helicase [Coxiella burnetii RSA 493]
 gi|161761929|gb|ABX77571.1| ATP-dependent DNA helicase RecG [Coxiella burnetii RSA 331]
          Length = 704

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 281/694 (40%), Positives = 412/694 (59%), Gaps = 51/694 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  + VG      L+      N N     DLLF+ PS + DR     I  I    
Sbjct: 17  LTSPITALKRVGSATRELLA------NLNIHTIQDLLFHLPSRYQDRTRVTAIGAIRHGD 70

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF---YRKTEMLKNVFFEGRKITV 125
            V + G I Q ++     RR     ++DGTG + L F+   Y++   LK     G ++  
Sbjct: 71  QVVVEGKI-QLATITYGGRRNLMCSISDGTGSLILRFYHFNYQQQRQLKM----GLRVRC 125

Query: 126 TGKIKK-LKNRIIMVHPHYIFHNSQDVNFPLI-----EAVYSLPTGLSVDLFKKIIVEAL 179
            G +++  + R+ M+HP Y      D + PLI       +Y    GLS   ++ +I ++L
Sbjct: 126 FGNVRRNYQGRMEMIHPEY---RIVDESTPLIPEDRLTPIYPTTKGLSQTKWRHLINQSL 182

Query: 180 SRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERL 228
           + L        +LPE I   L      P++ EA   +H+P      +       P+++RL
Sbjct: 183 NYLKDPNFVEELLPEKIRTPL----RLPTLTEALFYVHSPPHNAPVDLLQASKHPSQQRL 238

Query: 229 AYDELLAGQIAL----LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
           A++EL+A Q+ L    LL+R Q       PI ++    +K+ R + F  T +Q+  I +I
Sbjct: 239 AFEELVAQQLGLQQWRLLIRTQ-----PAPILIKNNWQEKLKRALTFELTSAQKRVIGEI 293

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
            QD+S+   MLR+LQGDVGSGKT+VA +A+  AVE G Q+ IMAP  +LA+QHY+  +++
Sbjct: 294 NQDLSKPKPMLRLLQGDVGSGKTIVAAMAILKAVENGYQSAIMAPTELLAEQHYQVFQRW 353

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                I V  + G++  + R K L+ IA GQ  +IIGTHALFQ ++ + +L  +++DEQH
Sbjct: 354 FSPLGIRVGWLAGSLTPSAREKTLQEIASGQLSVIIGTHALFQAAVTFQQLAFIVIDEQH 413

Query: 405 RFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           RFGV QRL L +KAT    PH L+MTATPIPRTL +T+  D+D S I E+P GRKPI TV
Sbjct: 414 RFGVHQRLALKEKATPNYHPHQLIMTATPIPRTLAMTAYADLDFSIIDEQPPGRKPITTV 473

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520
           +I  +R D+VIER+K    +GK+ YW+C  I + +     +    F  L + FT+ S+ +
Sbjct: 474 LISNSRRDKVIERIKKNCEQGKQVYWVCTLITDSEVLQCETAEATFKKLQQSFTNLSVGL 533

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHGR++  +K+ VM +FKNG   LL+ATTVIEVG+DV +AS+++IEN+E  GLAQ+HQLR
Sbjct: 534 IHGRLTKEEKDVVMGAFKNGDIDLLVATTVIEVGVDVPNASLMVIENSERLGLAQIHQLR 593

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRGE+ S C+LLY  PLSKN+  RL++L++T+DGFL+A++DL+ R  GE+LG +QSG
Sbjct: 594 GRVGRGEQKSYCVLLYQEPLSKNARARLTLLRDTQDGFLVAQKDLELRGPGELLGARQSG 653

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           + +F IA    H  LL   RK A  IL +  + T
Sbjct: 654 LFRFRIADVIRHQHLLPAVRKAAFLILRRYSEFT 687


>gi|220936340|ref|YP_002515239.1| ATP-dependent DNA helicase RecG [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997650|gb|ACL74252.1| ATP-dependent DNA helicase RecG [Thioalkalivibrio sp. HL-EbGR7]
          Length = 686

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 260/647 (40%), Positives = 378/647 (58%), Gaps = 20/647 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG K +  L+KI            DLLF+ P  + DR     +  +       
Sbjct: 4   PVTVLKGVGPKLAEKLAKI------GIRTVTDLLFHLPLRYQDRTRVMPMGSLRPGDEGV 57

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  H+    + RR   + L+DGTG ITL FF+      +     G ++   G+ ++
Sbjct: 58  VEGVVD-HAEVVFRGRRMLLVRLSDGTGSITLRFFHFSAAQQQG-LVRGLRLRCFGEARR 115

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +  + +VHP Y  +   S  V+  L   +Y    GL     +++  EAL+RL  LP+W+
Sbjct: 116 GQAGLEIVHPEYRAVLDESASVDDTLT-PIYPTTEGLHQLSLRRLTDEALARLDRLPDWL 174

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIALLLMRK 245
              +L     P +  A   +H P      A   +   PA+ RLA++EL+A  ++L  +R 
Sbjct: 175 PPGVLNGAGLPDLETALRTVHRPPPDVPVAALLDGRHPAQRRLAFEELVAHHLSLARLRA 234

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           +   E   PI V+G++  ++   +PF+ T +Q+  I ++  DM++ + MLR++QGDVG+G
Sbjct: 235 RTTDEPASPIKVKGELFAQLQARLPFALTGAQQRVIAELSTDMARPHPMLRLVQGDVGAG 294

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KTLVA+ A   AVEAG QA +MAP  ILA+QH+           + V  ++G +    RR
Sbjct: 295 KTLVAVAACLHAVEAGYQAAVMAPTEILAEQHFHNFGDLLAPLGVNVAWLSGKLTVRARR 354

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----P 421
           +AL  +A G+A + +GTHALFQ+ + +  L LV++DEQHRFGV QR+ L +K       P
Sbjct: 355 EALAEVAEGRARVAVGTHALFQEDVAFDDLALVVIDEQHRFGVHQRMALREKGNRDGRLP 414

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +T+  D+D S I E P GR PI+TV +   R  EV+ER+   ++E
Sbjct: 415 HQLIMTATPIPRTLAMTAYADLDYSVIDELPPGRTPIRTVAVSDKRRHEVVERISGAVAE 474

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+C  IEE +    ++  + F  L E     ++ ++HGRM   DKESVM  FK G
Sbjct: 475 GRQAYWVCTLIEESEALQAQAAEDTFAQLTEALPHVNVGLVHGRMKPRDKESVMARFKAG 534

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LL+ATTVIEVG+DV +AS++IIENAE  GLAQLHQLRGRVGRG   SSC+LLY PPL
Sbjct: 535 EIQLLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGRGTAESSCVLLYRPPL 594

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           S  +  RL  L+ T DGF IA  DL+ R  GE+LG +Q+G  +F IA
Sbjct: 595 SDTARKRLDALRATTDGFEIARIDLELRGPGEVLGTRQTGDMQFRIA 641


>gi|88607241|ref|YP_505812.1| ATP-dependent DNA helicase RecG [Anaplasma phagocytophilum HZ]
 gi|88598304|gb|ABD43774.1| ATP-dependent DNA helicase RecG [Anaplasma phagocytophilum HZ]
          Length = 702

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/648 (40%), Positives = 399/648 (61%), Gaps = 19/648 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE- 67
           +F+ +   +GV  +  L L K+  CG    +R +DLL Y P S++DR    +++ +S   
Sbjct: 27  MFSSIYDIQGVDNEKGLLLEKL--CGG---SRIVDLLLYAPYSYVDRR-NSQLTPLSRRG 80

Query: 68  RIVTITGYISQH-SSFQLQK--RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            +VT  G   +H   ++ +K  + PYK+ L    G+I L+FF      L++V   G++  
Sbjct: 81  SVVTFLGVAKKHVPPYKRRKSSKSPYKVQLGTEIGDIWLIFFNYSQPYLESVLEVGKQCL 140

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           V+GK++     + + HP Y  +N +       +E VYS+  GL   +  K+I  AL  + 
Sbjct: 141 VSGKLEIHCGEMQITHPDYCTNNLKKFTEICALEPVYSVTKGLHSRVIHKLIKVALKSIQ 200

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
              EW+  DL+++ S+ S  E+   +H P   ++ E     + RLAYDEL+A   A+   
Sbjct: 201 AQHEWLPADLIEENSWLSWQESVYKMHTP---ENVEEVRRIKGRLAYDELMAYHAAVYFA 257

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  +++ G+ + V+G   Q++L+ + F  T  Q+SAI++I +  +   +M ++LQGDVG
Sbjct: 258 RQHGRRK-GVALEVKGTNYQEVLKRLGFELTAGQKSAIREITRAQTSDQQMAKLLQGDVG 316

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VAL AM   VE+ GQ  +M P  +LA+QH  +IKK  +   I +E++TG     +
Sbjct: 317 SGKTVVALFAMLNTVESSGQVAVMVPTEMLAEQHCSWIKKLLEGMDICIELLTGKTKNKN 376

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
              A  R+  G+ HI+IGTHALFQ+S++++ L LV++DEQ RFGV QR+KL +K  +  +
Sbjct: 377 TIHA--RLLSGEIHILIGTHALFQESVKFHNLRLVVIDEQQRFGVLQRMKLIEKGDSADI 434

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L +TATPIPRTL     G++D   + +KPA R P+KT I+ +  ID++ +RLK ++S   
Sbjct: 435 LFITATPIPRTLEQILYGNMDRITLKDKPACRLPVKTSIVKVCMIDDLCKRLKNMISREH 494

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-AIIHGRMSDIDKESVMDSFKNGTC 542
           K YWICP IE  ++++  SV ERF  L   F ++I  + HG M+ I  ES + +F  G  
Sbjct: 495 KIYWICPYIEGSEDNDVASVEERFEFLKNMFGNNIVGVSHGAMTQIGNESALQAFYAGNI 554

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K+L+AT++IEVGI+V DA+II+IEN E FGL+QLHQLRGRVGRG + S CILL H P+SK
Sbjct: 555 KVLVATSIIEVGINVPDATIIVIENPERFGLSQLHQLRGRVGRGHQQSYCILL-HGPVSK 613

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            +Y +LSVL+++ DGF IAE+DL  R  G++LG +QSG+  F  A  +
Sbjct: 614 IAYRKLSVLRDSHDGFHIAEQDLILRGGGDMLGCRQSGIAAFKFADAQ 661


>gi|222475666|ref|YP_002564083.1| ATP-dependent DNA helicase (recG) [Anaplasma marginale str.
           Florida]
 gi|255003658|ref|ZP_05278622.1| ATP-dependent DNA helicase (recG) [Anaplasma marginale str. Puerto
           Rico]
 gi|255004782|ref|ZP_05279583.1| ATP-dependent DNA helicase (recG) [Anaplasma marginale str.
           Virginia]
 gi|222419804|gb|ACM49827.1| ATP-dependent DNA helicase (recG) [Anaplasma marginale str.
           Florida]
          Length = 699

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 268/650 (41%), Positives = 380/650 (58%), Gaps = 17/650 (2%)

Query: 33  CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRRP 89
           CG     R ID+L Y P  ++DR  +  ++E S  R+VT T  + QH      +   R P
Sbjct: 48  CGG---HRLIDILLYAPYGYVDRTNK-SLAEDSVGRVVTFTALVKQHMPPPPGRRAHRAP 103

Query: 90  YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN-S 148
           YKILL    G ++L+FF      L N    G +  V+GK++  +  + +VHP Y+     
Sbjct: 104 YKILLESEVGPVSLIFFNHSRGRLSNTLKVGHQCVVSGKLETHRGALQIVHPDYVTSKLD 163

Query: 149 QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
           Q      +E +YS+  G       K+I   +  LP   EWI  D+L + S+ S  ++   
Sbjct: 164 QLQEICTLEPLYSVVKGFQSKAMHKLIKAFVPLLPDWQEWIRPDVLSQNSWCSWKKSVEG 223

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
           +H+P   ++       + RLAYDELL+   A+    KQ +   G+ +   G   + + RN
Sbjct: 224 MHDPDSVREVHLY---KGRLAYDELLSYHAAMYFA-KQSRAAKGVSVKSCGVYRKLVERN 279

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           + F  T  Q+SAI+ I  D + + +M  +LQGDVGSGKT+VAL A+  AVE+GGQ  +M 
Sbjct: 280 LGFELTDGQKSAIEAITSDQASEKQMTMLLQGDVGSGKTVVALFAILNAVESGGQVALMV 339

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QHY  I        I  E++TG+       K  +R+  G   I+IGTHALFQ+
Sbjct: 340 PTEILAEQHYARISDALSGLNICTELLTGSTKNKQLLK--DRLLAGDICILIGTHALFQE 397

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           S+++  L LV++DEQ RFGV QR++L +K  +  VL ++ATPIPRTL     G+ID   +
Sbjct: 398 SVRFRNLRLVVIDEQQRFGVVQRMRLAEKGESTDVLFISATPIPRTLEQILYGNIDRVTL 457

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             +P GR+P+ T +I I RIDEV  RL+  +SEG KAYWICP+I   + S   S   RF 
Sbjct: 458 FGRPQGRRPVHTSMIQIGRIDEVCHRLQNAISEGHKAYWICPRIVHSETSEMTSAEGRFI 517

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +L E F + + I HG +  +DK+  + +F  G  K+L+ATTVIEVGIDV DA+II+IEN 
Sbjct: 518 ALREIFGNLVGIAHGALPQVDKDKAIRAFHAGDIKILVATTVIEVGIDVPDATIIVIENP 577

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E FGL+QLHQLRGRVGR  + S CILL H  + + +Y +LSVL++++DGF IAE+DL  R
Sbjct: 578 EKFGLSQLHQLRGRVGRSSKQSFCILL-HGAIGRIAYRKLSVLRSSQDGFFIAEQDLLLR 636

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL-TQDPDLTSVR 677
             G+ILG KQSG  +F  A P    ++L  AR DA  +L T +   T+ R
Sbjct: 637 GGGDILGYKQSGAVEFRFADPFDVQTVLN-ARSDAWSMLKTAEGRATACR 685


>gi|56417302|ref|YP_154376.1| ATP-dependent DNA helicase [Anaplasma marginale str. St. Maries]
 gi|56388534|gb|AAV87121.1| ATP-dependent DNA helicase [Anaplasma marginale str. St. Maries]
          Length = 699

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 268/650 (41%), Positives = 380/650 (58%), Gaps = 17/650 (2%)

Query: 33  CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRRP 89
           CG     R ID+L Y P  ++DR  +  ++E S  R+VT T  + QH      +   R P
Sbjct: 48  CGG---HRLIDILLYAPYGYVDRTNK-SLAEDSVGRVVTFTALVKQHMPPPPGRRAHRAP 103

Query: 90  YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN-S 148
           YKILL    G ++L+FF      L N    G +  V+GK++  +  + +VHP Y+     
Sbjct: 104 YKILLESEVGPVSLIFFNHSRGRLSNTLKVGHQCVVSGKLETHRGALQIVHPDYVTSKLD 163

Query: 149 QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
           Q      +E +YS+  G       K+I   +  LP   EWI  D+L + S+ S  ++   
Sbjct: 164 QLQEICTLEPLYSVVKGFQSKAMHKLIKAFVPLLPDWQEWIRPDVLSQNSWCSWKKSVEG 223

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
           +H+P   ++       + RLAYDELL+   A+    KQ +   G+ +   G   + + RN
Sbjct: 224 MHDPDSVREVYLY---KGRLAYDELLSYHAAMYFA-KQSRAAKGVSVKSCGVYRKLVERN 279

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           + F  T  Q+SAI+ I  D + + +M  +LQGDVGSGKT+VAL A+  AVE+GGQ  +M 
Sbjct: 280 LGFELTDGQKSAIEAITSDQASEKQMTMLLQGDVGSGKTVVALFAILNAVESGGQVALMV 339

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QHY  I        I  E++TG+       K  +R+  G   I+IGTHALFQ+
Sbjct: 340 PTEILAEQHYARISDALSGLNICTELLTGSTKNKQLLK--DRLLAGDICILIGTHALFQE 397

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           S+++  L LV++DEQ RFGV QR++L +K  +  VL ++ATPIPRTL     G+ID   +
Sbjct: 398 SVRFRNLRLVVIDEQQRFGVVQRMRLAEKGESTDVLFISATPIPRTLEQILYGNIDRVTL 457

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             +P GR+P+ T +I I RIDEV  RL+  +SEG KAYWICP+I   + S   S   RF 
Sbjct: 458 FGRPQGRRPVHTSMIQIGRIDEVCHRLQNAISEGHKAYWICPRIVHSETSEMTSAEGRFI 517

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +L E F + + I HG +  +DK+  + +F  G  K+L+ATTVIEVGIDV DA+II+IEN 
Sbjct: 518 ALREIFGNLVGIAHGALPQVDKDKAIRAFHAGDIKILVATTVIEVGIDVPDATIIVIENP 577

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E FGL+QLHQLRGRVGR  + S CILL H  + + +Y +LSVL++++DGF IAE+DL  R
Sbjct: 578 EKFGLSQLHQLRGRVGRSSKQSFCILL-HGDIGRIAYRKLSVLRSSQDGFFIAEQDLLLR 636

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL-TQDPDLTSVR 677
             G+ILG KQSG  +F  A P    ++L  AR DA  +L T +   T+ R
Sbjct: 637 GGGDILGYKQSGAVEFRFADPFDVQTVLN-ARSDAWSMLKTAEGRATACR 685


>gi|269958308|ref|YP_003328095.1| ATP-dependent DNA helicase [Anaplasma centrale str. Israel]
 gi|269848137|gb|ACZ48781.1| ATP-dependent DNA helicase [Anaplasma centrale str. Israel]
          Length = 699

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 267/650 (41%), Positives = 380/650 (58%), Gaps = 17/650 (2%)

Query: 33  CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRRP 89
           CG     R ID+L Y P  ++DR  +  ++E S  R+VT T  + QH      +   R P
Sbjct: 48  CGG---HRLIDILLYAPYGYVDRTNK-SLAEDSVGRVVTFTALVKQHMPPPPGRRAHRAP 103

Query: 90  YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN-S 148
           YKILL    G ++L+FF      L N    G +  V+GK++  +  + +VHP Y+     
Sbjct: 104 YKILLESEVGPVSLIFFNHSRGRLSNTLKVGHQCVVSGKLETHRGALQIVHPDYVTSKLD 163

Query: 149 QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
           Q      +E +YS+  G       K+I   +  LP   EWI  D+L + S+ S  ++   
Sbjct: 164 QLQEICTLEPLYSVVKGFQSKAVHKLIKAFVPLLPDWQEWIRPDVLSQNSWCSWKKSVEG 223

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
           +H+P   ++       + RLAYDELL+   A+    KQ +   G+ +   G   + + RN
Sbjct: 224 MHDPDSVREVHLY---KGRLAYDELLSYHAAMYFA-KQSRAAKGVSVKSCGVYRKLVERN 279

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           + F  T  Q+SAI+ I  D + + +M  +LQGDVGSGKT+VAL A+  AVE+GGQ  +M 
Sbjct: 280 LGFELTDGQKSAIEAITSDQASEKQMTMLLQGDVGSGKTVVALFAILNAVESGGQVALMV 339

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QHY  I        I  E++TG+       K  +R+  G   I+IGTHALFQ+
Sbjct: 340 PTEILAEQHYARISNALSGLNICTELLTGSTKNKQLLK--DRLLAGDICILIGTHALFQE 397

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           S+++  L LV++DEQ RFGV QR++L +K  +  VL ++ATPIPRTL     G+ID   +
Sbjct: 398 SVRFRNLRLVVIDEQQRFGVLQRMRLAEKGESTDVLFISATPIPRTLEQILYGNIDRVTL 457

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             +P GR+P+ T +I I RIDEV  RL+  +SEG KAYWICP+I   + S   S   RF 
Sbjct: 458 FGRPQGRRPVHTSMIQIGRIDEVCHRLQNAISEGHKAYWICPRIVHSETSEMTSAEGRFL 517

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +L + F + + I HG +  +DK+  + +F  G  K+L+ATTVIEVGIDV DA+II+IEN 
Sbjct: 518 ALRKIFGNLVGIAHGALPQVDKDEAIRAFHAGDIKILVATTVIEVGIDVPDATIIVIENP 577

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E FGL+QLHQLRGRVGR  + S CILL H  + + +Y +LSVL++++DGF IAE+DL  R
Sbjct: 578 EKFGLSQLHQLRGRVGRSSKQSFCILL-HGDIGRIAYRKLSVLRSSQDGFFIAEQDLLLR 636

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL-TQDPDLTSVR 677
             G+ILG KQSG  +F  A P    ++L  AR DA  +L T +   T+ R
Sbjct: 637 GGGDILGYKQSGAVEFRFADPFDVQTVLN-ARSDAWSMLKTAEGRATACR 685


>gi|262277199|ref|ZP_06054992.1| ATP-dependent DNA helicase RecG [alpha proteobacterium HIMB114]
 gi|262224302|gb|EEY74761.1| ATP-dependent DNA helicase RecG [alpha proteobacterium HIMB114]
          Length = 683

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/695 (36%), Positives = 404/695 (58%), Gaps = 15/695 (2%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LF P+   +G+G K    L +       N    +DLL   P+  IDR + PK+ ++  
Sbjct: 3   NSLFDPVLKIKGIGPKIQKKLEE------KNIFNKVDLLLNLPTGTIDRRFCPKLDQLEI 56

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            +I TI     +++ F   K  P ++   D   +I L+FF  +   +K +     ++ ++
Sbjct: 57  GKISTIFATPIKYN-FPRIKNLPSRVSCVDEFSKIDLVFFNSRENYIKQILPLNEEVVIS 115

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK+   KN+  + +P YI    +  +   I + Y   +G+S    +KI  E    L  + 
Sbjct: 116 GKVTFYKNKYQITNPDYIRSTDKGADIKKIMSKYPSISGVSDKTLQKIYSEEADNLSRID 175

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           EW + + L K  + S  E+   IHNP   +D    SP  ERLA+DE+ +  +    ++K+
Sbjct: 176 EWHDLNFLNKMKWLSWPESLKRIHNPVYNEDVNKNSPYYERLAFDEIYSNLLIFNEIKKR 235

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            +K   IP  +      KI + +PF  T  Q   + +I++DM    +M+R+LQGDVGSGK
Sbjct: 236 LEKIKKIPKKISLDQINKIKKLLPFQLTDDQNKCLDEIIEDMKSNKKMMRVLQGDVGSGK 295

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T++ALI+      +  Q+ IM P  ILA QHY+F +K  +N  I +E+++G      ++K
Sbjct: 296 TVLALISSYLNYLSNYQSAIMVPTEILAIQHYKFFQKIFKNQDIKIELLSGKTKIKDQKK 355

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLL 425
             E++ + + +IIIGTH+LFQ+ I+++ L LV++DEQH+FGV+QR+ L+QK +    V+L
Sbjct: 356 VREKLKNNEINIIIGTHSLFQEKIEFFNLGLVVIDEQHKFGVKQRINLSQKGSDNTDVIL 415

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTLVLT+ GD++IS I  KP     I+T+  P+N++DE+I+ +   ++EG + 
Sbjct: 416 MTATPIPRTLVLTNYGDMNISTIKNKPFSNNNIETLTKPLNKLDEIIDFVNKKINEGDQI 475

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           YW+CP IEE ++    + ++R++ L +  +  I +IHG +S  +K+ +M+ F +G  K +
Sbjct: 476 YWVCPLIEESEKLKLTAAIKRYDFLKDKISCDIGLIHGSLSKNEKDLIMEKFIDGNIKCI 535

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           I+TTVIEVGID  +A+ I+IENAE FGLAQLHQLRGRVGR    + C+L+Y   +S+   
Sbjct: 536 ISTTVIEVGIDNPNANTIVIENAERFGLAQLHQLRGRVGRSGSKAYCLLVYSSSISETGK 595

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL ++K++ DGF I+EEDLK R  G+I+G KQSG   F IA P  H  L ++A+ + + 
Sbjct: 596 KRLKIMKDSCDGFFISEEDLKLRGFGDIIGYKQSGEKDFTIADPLYHSHLFDLAKDEIEK 655

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
                  L        +ILL +++ ++    I  G
Sbjct: 656 -------LDEESYAKFKILLKIFKKDKVLNIIDTG 683


>gi|209696308|ref|YP_002264239.1| ATP-dependent DNA helicase RecG [Aliivibrio salmonicida LFI1238]
 gi|208010262|emb|CAQ80594.1| ATP-dependent DNA helicase RecG [Aliivibrio salmonicida LFI1238]
          Length = 693

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 262/653 (40%), Positives = 388/653 (59%), Gaps = 30/653 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+KI            DLLF+ P  + DR     I+ +       
Sbjct: 10  PLTSLAGVGAKVAEKLAKI------GLVTIQDLLFHLPLRYEDRTKVYPIARVHAGLFAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +      Q  KR+   + ++DG G ITL FF     M KN F EG+ +   G+IK+
Sbjct: 64  VQGNVMS-CDLQFGKRKMLLVKISDGNGTITLRFFNFNAGM-KNHFSEGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL-IEA----VYSLPTGLSVDLFKKIIVEALSRL--PV 184
               + +VHP Y FH       PL IEA    VY    GL  +  + +  +AL  L    
Sbjct: 122 GGVGLEIVHPDYQFHTPSK---PLDIEATLTPVYPATDGLRQNTLRSLTDQALVLLDKAA 178

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIAL 240
           + E + + L   +   ++ +A +IIH P  + + E       PA++RL  +ELLA  +++
Sbjct: 179 VTELLPQGLYNNQI--TLNQALHIIHRPDPSINLEAFDQGKHPAQQRLIIEELLAQNLSM 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +R + ++E  +P+     + QK+L  +PF+PT +Q+  + +I  D+++ + M+R++QG
Sbjct: 237 LSVRSKGQQENALPLTTRSNLKQKLLAQLPFTPTNTQQRVVAEIEHDLAKPHPMMRLVQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLV+ +A   A+E G Q  +MAP  +LA+QH     K+ ++  I V  + G + 
Sbjct: 297 DVGSGKTLVSALAAVQAIEHGYQVALMAPTELLAEQHAINFTKWFESMGIPVGWLAGKLT 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--- 417
              + K L RIA G+A +I+GTHALFQ  +Q++ L LVI+DEQHRFGV QRL+L +K   
Sbjct: 357 GKAKEKELTRIASGEAKMIVGTHALFQQHVQFHHLALVIIDEQHRFGVDQRLELREKGLK 416

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV +P  R  E+++++K
Sbjct: 417 NGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAVPDTRRSEIVDKVK 476

Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
              L +G++AYW+C  I++ +    ++  +   SL       +I ++HGRM   +K+ +M
Sbjct: 477 TACLEDGRQAYWVCTLIDDSEVLEAQAASDTAESLRLQLPELNIGLVHGRMKSQEKQRIM 536

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+L
Sbjct: 537 QEFKEGKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGTVASHCVL 596

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           LYH PLSK +  RLSVL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA
Sbjct: 597 LYHAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIA 649


>gi|121997758|ref|YP_001002545.1| ATP-dependent DNA helicase RecG [Halorhodospira halophila SL1]
 gi|121589163|gb|ABM61743.1| ATP-dependent DNA helicase RecG [Halorhodospira halophila SL1]
          Length = 691

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 268/675 (39%), Positives = 392/675 (58%), Gaps = 27/675 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L++  GVG + +  L+++            DLL + P  + DR     I  +     V I
Sbjct: 8   LTSLPGVGPRLAERLARL------GLHTVGDLLLHRPIRYEDRTRLRPIGGLQPGERVLI 61

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFY---RKTEMLKNVFFEGRKITVTGKI 129
            G + + S     +R+     L+DGTG++ L+FF+   R+ E L      G  +   G++
Sbjct: 62  EGRV-EWSEVARGRRKRLLCRLSDGTGQLDLVFFHFHPRQAERLSR----GVVLRCFGEV 116

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP-VL 185
           +     + M HP +      D + P  EA   VY+   GL     +K++  ALS LP   
Sbjct: 117 RAGYGGLQMAHPEHQRVAPGDADGPGEEALTPVYASTDGLHQGQLRKLVDAALSLLPGAA 176

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALL 241
           PE +         +PS+AEA   +H P    D E     T PA  R+A +ELLA  + L 
Sbjct: 177 PECLPDAARVDPQWPSLAEALRTVHRPPPEADTETLLAGTHPAVRRVACEELLAHHLTLR 236

Query: 242 LMRKQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             R+  + E G P   +G+ +AQ++L+++PF+ T +Q+    ++ +DM++   MLR+LQG
Sbjct: 237 RRRQALRSEAGAPPLDQGEALAQRLLQSLPFALTGAQQRVDGELAEDMARSMPMLRLLQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A A AV +G QA +MAP  +LA+QH   ++ + Q   + V  ++G  P
Sbjct: 297 DVGSGKTVVAALACARAVGSGYQAALMAPTELLAEQHCRSLQGWFQPLGVEVAWLSGGAP 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            A RR A +R+A G+A I +GTHALFQ+ +Q+ +L LV+VDEQHRFGV QRL L  K   
Sbjct: 357 AAERRAARQRLAEGRAGIAVGTHALFQEEVQFRRLGLVVVDEQHRFGVHQRLALKDKGGG 416

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L MTATPIPRTL +T+  D+D+S + E+P GR P+KTV++   R  EVI R++  
Sbjct: 417 AEPHQLTMTATPIPRTLAMTAYADLDVSSLDERPPGRTPVKTVVVAERRRAEVIARIRAA 476

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDS 536
           L EG++AYW+C  IE   E   ++  +    L      +  +A++HGRMS  +KE  M +
Sbjct: 477 LDEGRQAYWVCTLIEASDELEAQAAEDTAAELDRAVGDAHRVALVHGRMSPAEKERTMAA 536

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   LL+ATTVIEVG+DV +AS+++I+NAE  GLAQLHQLRGRVGRG   S+C+L+Y
Sbjct: 537 FAQGEVALLVATTVIEVGVDVPNASLMVIDNAERLGLAQLHQLRGRVGRGRAASTCVLMY 596

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLS+++  RL+VL+ T+DGF IA  DL  R  GE+LG +Q+G     +A       LL
Sbjct: 597 HGPLSESARQRLAVLRETDDGFAIARRDLDIRGPGELLGTRQTGALSLRVADLRRDADLL 656

Query: 657 EIARKDAKHILTQDP 671
           E  ++    +L Q P
Sbjct: 657 EAVQQVGAELLEQAP 671


>gi|260557013|ref|ZP_05829230.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii ATCC
           19606]
 gi|260409619|gb|EEX02920.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii ATCC
           19606]
          Length = 681

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 268/671 (39%), Positives = 401/671 (59%), Gaps = 29/671 (4%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R   + G 
Sbjct: 7   LQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGE 60

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           + +   F L KR+    L+ D  G++TL F Y   + L +    G ++ + G+++     
Sbjct: 61  V-KSVDFPLGKRKSMAALIQDEFGKVTLRF-YHIYKNLTDKIKPGNRLRIFGEVRVGARG 118

Query: 136 IIMVHPHYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIE 190
           + + HP     N    + PL    + A+Y    GL+    ++ + +AL      LPE + 
Sbjct: 119 LELYHPEIQLINE---HTPLPKTQLTAIYPSTDGLTQAKLREYVKQALKHHSDALPELLP 175

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQ 246
           K   Q  +  ++ EA + IH P    +     + + PA++RL ++EL+A QI+LL  R+ 
Sbjct: 176 K---QYTNGYALKEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLL-TRRA 231

Query: 247 FKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + ++I  P     K+ A+K+L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+G
Sbjct: 232 YIRQIASPAFPSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGAG 291

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KTLVA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R 
Sbjct: 292 KTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKARA 351

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APH 422
            A ++I  G A +I+GTHALFQD++++ KL LVI+DEQHRFGV QRL L  K      PH
Sbjct: 352 HAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGAEQLTPH 411

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     EG
Sbjct: 412 QLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCREG 471

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           K+AYW+C  +E+ +  + ++    +  + E F   +I ++HG+M   +K++VM +FKN  
Sbjct: 472 KQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNNE 531

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG + S C+LLY PPLS
Sbjct: 532 LQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKPPLS 591

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A  
Sbjct: 592 QNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAHY 651

Query: 662 DAKHILTQDPD 672
            A+ +L   P+
Sbjct: 652 VAQQVLKDYPE 662


>gi|260549854|ref|ZP_05824070.1| ATP-dependent DNA helicase RecG [Acinetobacter sp. RUH2624]
 gi|260407104|gb|EEX00581.1| ATP-dependent DNA helicase RecG [Acinetobacter sp. RUH2624]
          Length = 681

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 268/671 (39%), Positives = 400/671 (59%), Gaps = 29/671 (4%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R   + G 
Sbjct: 7   LQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGE 60

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           + +   F   KR+    L+ D  G++TL F Y   + L +    G ++ + G+++     
Sbjct: 61  V-KSVDFPPGKRKSMAALIQDEFGKVTLRF-YHIYKNLTDKIKPGHRLRIFGEVRVGARG 118

Query: 136 IIMVHPHYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIE 190
           + + HP     N    + PL    + A+Y    GL+    ++ + +AL      LPE + 
Sbjct: 119 LELYHPEIQLINE---HTPLPKTQLTAIYPSTDGLTQPKLREYVKQALKHHSDALPELLP 175

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQ 246
           K   Q  +  ++ EA + IH P    +     + + PA++RL ++EL+A QI+LL  R+ 
Sbjct: 176 K---QYTNGYALKEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLL-TRRA 231

Query: 247 FKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + ++I  P     K+ A+K+L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+G
Sbjct: 232 YIRQIASPAFPSSKVLAKKLLEALPFQMTNAQKRVSKEILSDLKQHQPMLRLVQGDVGAG 291

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KTLVA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R 
Sbjct: 292 KTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKART 351

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APH 422
           +A ++I  G A +I+GTHALFQD++++ KL LVI+DEQHRFGV QRL L  K      PH
Sbjct: 352 QAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGAEQLTPH 411

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV+ R+     EG
Sbjct: 412 QLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLNRIATNCREG 471

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           K+AYW+C  +E+ +  + ++    +  + E F   +I ++HG+M   +K+SVM +FKN  
Sbjct: 472 KQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQSVMQAFKNNE 531

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG + S C+LLY PPLS
Sbjct: 532 LQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKPPLS 591

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A  
Sbjct: 592 QNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAHY 651

Query: 662 DAKHILTQDPD 672
            A+ +L   P+
Sbjct: 652 VAQQVLKDYPE 662


>gi|254456582|ref|ZP_05070011.1| ATP-dependent DNA helicase RecG [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083584|gb|EDZ61010.1| ATP-dependent DNA helicase RecG [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 683

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 260/671 (38%), Positives = 407/671 (60%), Gaps = 21/671 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE--ISE 66
           L + L+  +GVG K +  L K       N     DLL+  P S  DR +  KI E  I  
Sbjct: 10  LLSDLTALKGVGIKTTNLLKK------KNINNIFDLLWKLPKSSTDRSFSTKIVELRIGV 63

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           E+ VTI   + Q   F   +  P K+L  D TGEI  +FF      +K +   G++ITV+
Sbjct: 64  EQTVTI---VPQKYLFPRIRNLPNKVLCKDETGEIDCIFFNSYEGYVKKILPIGKEITVS 120

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           GKI   +NR  + +P YI   S+D +        YSL  G+S  ++ KII + +  LP+L
Sbjct: 121 GKIGYFRNRYQLTNPKYI---SEDASLIKQSHNTYSLTEGISEKIYNKIINQIIENLPIL 177

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            EW  K +L++    S  ++   +H P     ++  +   +RLA+DE+ +  +    +RK
Sbjct: 178 NEWHTKSILKRFDNISWNDSIKALHKPDNIGAYK--NNFYQRLAFDEIFSTFLVNSEIRK 235

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + KK   +   +  +    +++ + FS T  Q  ++K+I  D+S  N+M R+LQGDVGSG
Sbjct: 236 KIKKNKKLNKVLNIQKQNNLIKTLDFSLTTDQIKSLKEINNDLSSSNKMFRLLQGDVGSG 295

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-YTQNTQIIVEIITGNMPQAHR 364
           KT+V+L+A   +V AG Q  +MAP  ILA+QH+   KK +++N ++  E+I+G      +
Sbjct: 296 KTIVSLLAAYNSVNAGFQVAVMAPTEILARQHFTLAKKIFSKNLRL--ELISGKSIYKEK 353

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP-HV 423
           +  L+ + + +  II GTHA+FQ  + + KL L+I+DEQH+FGV QR +L+ K      V
Sbjct: 354 KVILDNLCNHKIDIIFGTHAIFQKKVNFKKLGLIIIDEQHKFGVNQRKRLSDKGGVDCDV 413

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           LLMTATPIPRTL +T  GD+D+S I EKP  RKPIKT     +++D+VI+ +K  +  G 
Sbjct: 414 LLMTATPIPRTLTMTVYGDMDLSIIREKPQSRKPIKTYSKLESKVDDVIQFIKKEIKLGN 473

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           + +W+CP I+E K+ ++ S +++F  L E F + ++++HG+    +KE ++++F N    
Sbjct: 474 QIFWVCPLIDESKKIDYSSAIKKFEFLKEKFPNKVSLLHGKTDTEEKEKILNNFLNKKFD 533

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TT+IEVGID  +A++IIIENA  FGL+QLHQLRGRVGRG++ S+CIL++   LS+N
Sbjct: 534 ILVSTTIIEVGIDFPNANVIIIENANKFGLSQLHQLRGRVGRGDKDSTCILMFKSNLSEN 593

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  R+++LK   DGF+I+EED+K R  G+ILG KQSG+  F +A P  ++ L  +A K+ 
Sbjct: 594 AKKRINILKQNNDGFIISEEDMKIRGFGDILGFKQSGIKNFKLADPIHNNDLFLLAEKEM 653

Query: 664 KHILTQDPDLT 674
           + I   + D++
Sbjct: 654 RRIEKSNEDIS 664


>gi|169794580|ref|YP_001712373.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AYE]
 gi|213158849|ref|YP_002320847.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB0057]
 gi|215482169|ref|YP_002324351.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii
           AB307-0294]
 gi|239503248|ref|ZP_04662558.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB900]
 gi|301347851|ref|ZP_07228592.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB056]
 gi|301511999|ref|ZP_07237236.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB058]
 gi|301597379|ref|ZP_07242387.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB059]
 gi|332853125|ref|ZP_08434562.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii 6013150]
 gi|332868629|ref|ZP_08438285.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii 6013113]
 gi|169147507|emb|CAM85368.1| ATP-dependent DNA helicase [Acinetobacter baumannii AYE]
 gi|213058009|gb|ACJ42911.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB0057]
 gi|213988100|gb|ACJ58399.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii
           AB307-0294]
 gi|332728794|gb|EGJ60153.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii 6013150]
 gi|332733306|gb|EGJ64500.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii 6013113]
          Length = 681

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 267/671 (39%), Positives = 400/671 (59%), Gaps = 29/671 (4%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R   + G 
Sbjct: 7   LQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGE 60

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           + +   F   KR+    L+ D  G++TL F Y   + L +    G ++ + G+++     
Sbjct: 61  V-KSVDFPPGKRKSMAALIQDEFGKVTLRF-YHIYKNLTDKIKPGNRLRIFGEVRVGARG 118

Query: 136 IIMVHPHYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIE 190
           + + HP     N    + PL    + A+Y    GL+    ++ + +AL      LPE + 
Sbjct: 119 LELYHPEIQLINE---HTPLPKTQLTAIYPSTDGLTQAKLREYVKQALKHHSDALPELLP 175

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQ 246
           K   Q  +  ++ EA + IH P    +     + + PA++RL ++EL+A QI+LL  R+ 
Sbjct: 176 K---QYTNGYALKEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLL-TRRA 231

Query: 247 FKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + ++I  P     K+ A+K+L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+G
Sbjct: 232 YIRQIASPAFPSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGAG 291

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KTLVA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R 
Sbjct: 292 KTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKARA 351

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APH 422
            A ++I  G A +I+GTHALFQD++++ KL LVI+DEQHRFGV QRL L  K      PH
Sbjct: 352 HAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGAEQLTPH 411

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     EG
Sbjct: 412 QLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCREG 471

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           K+AYW+C  +E+ +  + ++    +  + E F   +I ++HG+M   +K++VM +FKN  
Sbjct: 472 KQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNNE 531

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG + S C+LLY PPLS
Sbjct: 532 LQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKPPLS 591

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A  
Sbjct: 592 QNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAHY 651

Query: 662 DAKHILTQDPD 672
            A+ +L   P+
Sbjct: 652 VAQQVLKDYPE 662


>gi|169632337|ref|YP_001706073.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii SDF]
 gi|169151129|emb|CAO99795.1| ATP-dependent DNA helicase [Acinetobacter baumannii]
          Length = 681

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 268/672 (39%), Positives = 400/672 (59%), Gaps = 31/672 (4%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R   + G 
Sbjct: 7   LQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLMVGRTYLLEGE 60

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           + +   F   KR+    L+ D  G++TL F Y   + L +    G ++ + G+++     
Sbjct: 61  V-KSVDFPPGKRKSMAALIQDEFGKVTLRF-YHIYKNLTDKIKPGNRLRIFGEVRVGARG 118

Query: 136 IIMVHPHYIFHNSQDVNFPLIE--AVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKD 192
           + + HP     N +    P  +  A+Y    GL+    ++ + +AL      LPE + K 
Sbjct: 119 LELYHPEIQLIN-EHTTLPKTQLTAIYPSTDGLTQAKLREYVKQALKHHSDALPELLPK- 176

Query: 193 LLQKKSFPSIAEAFNIIHNP-------RKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
             Q  +  ++ EA + IH P       + A+D   + PA++RL ++EL+A QI+LL  R+
Sbjct: 177 --QYTNGYALKEALHYIHEPPIDANMIQLAQD---SHPAQQRLIFEELVAHQISLL-TRR 230

Query: 246 QFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            + ++I  P     K+ A+K+L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+
Sbjct: 231 AYIRQIASPAFPSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGA 290

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R
Sbjct: 291 GKTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKAR 350

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---AP 421
             A  +I  G A +I+GTHALFQD++++ KL LVI+DEQHRFGV QRL L  K      P
Sbjct: 351 AHAERQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGAEQLTP 410

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     E
Sbjct: 411 HQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCRE 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           GK+AYW+C  +E+ +  + ++    +  + E F   +I ++HG+M   +K++VM +FKN 
Sbjct: 471 GKQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNN 530

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG + S C+LLY PPL
Sbjct: 531 ELQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKPPL 590

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A 
Sbjct: 591 SQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAH 650

Query: 661 KDAKHILTQDPD 672
             A+ +L   P+
Sbjct: 651 YVAQQVLKDYPE 662


>gi|332532738|ref|ZP_08408612.1| ATP-dependent DNA helicase RecG [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037765|gb|EGI74215.1| ATP-dependent DNA helicase RecG [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 693

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 266/680 (39%), Positives = 393/680 (57%), Gaps = 32/680 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG K +  L K+            D+LF+ P  + DR     I+E+S    V+
Sbjct: 10  PITELKGVGPKMAERLLKL------GILTVQDMLFHLPLRYEDRTRLYAINELSLHSHVS 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           +   I + S     KRR     +NDGTG +TL FF   T   KN F  G+ I   G++++
Sbjct: 64  VEATI-ETSQITFGKRRMLVCQINDGTGRLTLRFF-NFTAAQKNAFSAGKIIRCFGEVRR 121

Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
            +    M HP Y      N Q V   L   VYS   GL     K++ + ALS   + +L 
Sbjct: 122 GRVGFEMSHPEYSISDTSNEQPVATTLT-PVYSTTEGL-----KQLSIRALSEQAIDLLN 175

Query: 187 EWIEKDLLQKKSFPS---IAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIA 239
           ++  ++LL  +  PS   +++A  ++H P    D     + T PA++RL ++ELLA  ++
Sbjct: 176 KYSVEELLPSQWQPSNMPLSDALLLLHRPPNDVDVTALEQGTHPAQQRLVFEELLAQNLS 235

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +R+Q ++   + +N    +  + L  +PF+PT +Q   + +I  DM     M+R++Q
Sbjct: 236 LLKVREQGQQVKAVALNPVNTLESQFLEQLPFAPTNAQSRVVAEIKGDMQHAYPMMRLVQ 295

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA ++   A+  G Q  +MAP  IL++QH      +     I V  + G  
Sbjct: 296 GDVGSGKTLVAALSALTAIAQGFQVALMAPTEILSEQHGVNFTTWFNQIGITVAWLGGKT 355

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA- 418
               R   LE+IA G+A +I+GTHALFQD +++  L+L+++DEQHRFGV QRL L +K  
Sbjct: 356 KGKERVATLEKIASGEAQMIVGTHALFQDEVKFNNLVLIVIDEQHRFGVHQRLSLREKGK 415

Query: 419 ---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +T+  D++ S I E P GR PI TV +P  R D++I R+
Sbjct: 416 FGDCYPHQLVMTATPIPRTLAMTAYADLETSVIDELPPGRTPITTVALPDTRRDDIIARV 475

Query: 476 KVVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           K+  +E G++ YW+C  I+E +    ++  +    L E     ++ ++HGRM   +K+++
Sbjct: 476 KLACNEQGRQVYWVCTLIDESEVLQCQAAEDSALQLKEALPDLNVGLVHGRMKSAEKQAI 535

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FK G   +L+ATTVIEVG+DV +AS+IIIEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 536 MSEFKAGNIHVLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGATASHCV 595

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLYH PLS  +  RL VL+++ DGF+IAE DL+ R  GE+LG KQ+G+ +F IA      
Sbjct: 596 LLYHAPLSHTAQKRLGVLRDSNDGFVIAERDLEIRGPGEVLGTKQTGLAEFKIADLTRDK 655

Query: 654 SLLEIARKDAKHILTQDPDL 673
            +L   R  A+ +L Q P++
Sbjct: 656 HILNQVRPIAQQMLKQHPEV 675


>gi|184159612|ref|YP_001847951.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii ACICU]
 gi|229577088|ref|YP_001086094.2| ATP-dependent DNA helicase RecG [Acinetobacter baumannii ATCC
           17978]
 gi|332876097|ref|ZP_08443881.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii 6014059]
 gi|183211206|gb|ACC58604.1| RecG-like helicase [Acinetobacter baumannii ACICU]
 gi|193078488|gb|ABO13492.2| ATP-dependent DNA helicase [Acinetobacter baumannii ATCC 17978]
 gi|322509522|gb|ADX04976.1| RecG [Acinetobacter baumannii 1656-2]
 gi|323519542|gb|ADX93923.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332735715|gb|EGJ66758.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii 6014059]
          Length = 681

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 267/671 (39%), Positives = 399/671 (59%), Gaps = 29/671 (4%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R   + G 
Sbjct: 7   LQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGE 60

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           + +   F   KR+    L+ D  G++TL F Y   + L +    G ++ + G+++     
Sbjct: 61  V-KSVDFPPGKRKSMAALIQDEFGKVTLRF-YHIYKNLTDKIKPGNRLRIFGEVRVGARG 118

Query: 136 IIMVHPHYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIE 190
           + + HP     N    + PL    + A+Y    GL+    ++ + +AL      LPE + 
Sbjct: 119 LELYHPEIQLINE---HTPLPKTQLTAIYPSTDGLTQAKLREYVKQALKHHSDALPELLP 175

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQ 246
           K   Q  +  ++ EA + IH P    +     + + PA++RL ++EL+A QI+LL  R+ 
Sbjct: 176 K---QYTNGYALKEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLL-TRRA 231

Query: 247 FKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + ++I  P     K+ A+K+L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+G
Sbjct: 232 YIRQIASPAFPSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGAG 291

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KTLVA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R 
Sbjct: 292 KTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKARA 351

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APH 422
            A ++I  G A +I+GTHALFQD++++ KL LVI+DEQHRFGV QRL L  K      PH
Sbjct: 352 HAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGAEQLTPH 411

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV+ R+     EG
Sbjct: 412 QLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLHRIASNCREG 471

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           K+AYW+C  +E+ +  + ++    +  + E F   +I ++HG+M   +K++VM +FKN  
Sbjct: 472 KQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNNE 531

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG + S C+LLY PPLS
Sbjct: 532 LQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKPPLS 591

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A  
Sbjct: 592 QNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAHY 651

Query: 662 DAKHILTQDPD 672
            A+ +L   P+
Sbjct: 652 VAQQVLKDYPE 662


>gi|262280238|ref|ZP_06058022.1| ATP-dependent DNA helicase RecG [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258016|gb|EEY76750.1| ATP-dependent DNA helicase RecG [Acinetobacter calcoaceticus
           RUH2202]
          Length = 681

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 268/671 (39%), Positives = 398/671 (59%), Gaps = 29/671 (4%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R   + G 
Sbjct: 7   LQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIAMNQLVVGRSYLLEGE 60

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           + +   F   KR+    L+ D  G++TL F Y   + L +    G ++ + G+++     
Sbjct: 61  V-RSIDFPPGKRKSMAALVQDEFGKVTLRF-YHIYKNLTDKIKPGHRLRIFGEVRVGARG 118

Query: 136 IIMVHPHYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIE 190
           + M HP     N    + PL    + A+Y    GL+    ++ + +AL      LPE + 
Sbjct: 119 LEMYHPEIQLINE---HTPLPKTQLTAIYPSTDGLTQPKLREYVKQALKHHSDALPELLP 175

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQ 246
           K   Q  +  ++ EA   IH P    +     + + PA++RL ++EL+A QI+LL  R+ 
Sbjct: 176 K---QYTNGYALKEALYYIHEPPVDANMVQLAQGSHPAQQRLIFEELVAHQISLL-NRRA 231

Query: 247 FKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + ++I  P     KI A+K+L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+G
Sbjct: 232 YIRQIASPAFSSSKILAKKLLEALPFQMTNAQKRVSKEILNDLKQNQPMLRLVQGDVGAG 291

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KTLVA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R 
Sbjct: 292 KTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKARA 351

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APH 422
           +A ++I  G A +IIGTHALFQDS+ + KL LVI+DEQHRFGV QRL L  K      PH
Sbjct: 352 QAEQQIKEGHAELIIGTHALFQDSVGFAKLGLVIIDEQHRFGVDQRLALRNKGAEQFTPH 411

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     +G
Sbjct: 412 QLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCRDG 471

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           K+AYW+C  +E+ +  + ++    +  + E F   +I ++HG+M   +K++VM +FKN  
Sbjct: 472 KQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNNE 531

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            +LLIATTVIEVG+DV ++SI++IENAE  GL+QLHQLRGRVGRG + S C+LLY  PLS
Sbjct: 532 LQLLIATTVIEVGVDVPNSSIMVIENAERLGLSQLHQLRGRVGRGAQASFCVLLYKTPLS 591

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A  
Sbjct: 592 QNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAHY 651

Query: 662 DAKHILTQDPD 672
            A+ +L   P+
Sbjct: 652 VAQQVLKDYPE 662


>gi|119503539|ref|ZP_01625622.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2080]
 gi|119460601|gb|EAW41693.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2080]
          Length = 690

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 259/679 (38%), Positives = 388/679 (57%), Gaps = 23/679 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L A + T RGVG K    L ++  C         D+L++ P  + DR     I  + +  
Sbjct: 9   LSASVGTLRGVGPKLQQRLEELGLCC------VEDILYHFPLRYQDRTQLTAIGSLKDGV 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
              I G I   S   +  RRP  I+ + DGTG +T+ FF+ +    + +   G  I + G
Sbjct: 63  DAVIQGSIRLSSI--VPGRRPTLIVKVEDGTGILTVRFFHFRRAQAQQMK-PGLPIALFG 119

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           + ++    + MVHP Y   ++       +  +Y    GL    ++ +  +AL    +L +
Sbjct: 120 QARRSGAGLDMVHPEYRLEDADIFLEAALTPIYPTVEGLGQGFWRNLTDQALI---ILKQ 176

Query: 188 WIEKDLLQ--KKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241
              +DLL     S  ++ EA   +H P          EW  PA+ RLA +EL+A  ++L 
Sbjct: 177 NSPEDLLHGIADSPFALVEAIQFLHRPPPNAPIDRIREWEHPAQLRLALEELVAHNLSLQ 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           ++R Q K  + + +  +  IA   L ++PF PT +Q+  I++I  DM+  + MLR++QGD
Sbjct: 237 MLRAQEKACLAVAMKSDQSIAGPFLSHLPFKPTAAQQRVIQEIAHDMTLPSPMLRLIQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT VA +A   A+EAG Q  +MAP  +L +QH +  K++ +   + +  ++G +  
Sbjct: 297 VGSGKTFVAAMACITAIEAGQQVALMAPTELLGEQHLQTFKQWLEPFGVRIAWLSGRVKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--- 418
             R   L+ I+ G   +++GTHALFQ+ + +  L LVIVDEQHRFGV QRL LT+KA   
Sbjct: 357 RARSAVLQEISEGSVALVVGTHALFQEGVTFASLALVIVDEQHRFGVHQRLALTEKASGP 416

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           T PH L++TATPIPRTL + +  D+D S I E P GR P++T ++   R D+VI+R+   
Sbjct: 417 TLPHQLVLTATPIPRTLSMVAYADLDCSVIDELPPGRTPVQTTLLDSQRRDQVIQRVGAG 476

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             EG++AYW+C  IEE +  + R+       L     +  I +IHGR+   DKE++M +F
Sbjct: 477 CGEGRQAYWVCTLIEESENLDARAAEATAELLQAQLPNLHIGLIHGRLPPADKEAMMAAF 536

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 537 KAGKIELLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGATASHCVLLYQ 596

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS+    RL V++ + DGF IAE+DL  R  GE+LG +Q+G+  F +AQ   H+ LLE
Sbjct: 597 APLSQRGRERLDVMRRSNDGFYIAEQDLLFRGPGELLGTRQTGLTSFRVAQLPAHEMLLE 656

Query: 658 IARKDAKHILTQDPDLTSV 676
              + A+ ++   PD  ++
Sbjct: 657 QVAEIAESLVQNYPDRCTL 675


>gi|293610810|ref|ZP_06693110.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827154|gb|EFF85519.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 681

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 264/668 (39%), Positives = 397/668 (59%), Gaps = 23/668 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R   + G 
Sbjct: 7   LQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGE 60

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           + +   F   KR+    L+ D  G++TL F Y   + L +    G ++ + G+++     
Sbjct: 61  V-KSIDFPPGKRKSMAALVQDEFGKVTLRF-YHIYKNLTDKIKPGHRLRIFGEVRVGARG 118

Query: 136 IIMVHPH-YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDL 193
           + M HP   + H    +    + A+Y    GL+    ++ + +AL      LPE + K  
Sbjct: 119 LEMYHPEIQLIHEHTPLPKTQLTAIYPSTDGLTQPKLREYVKQALKHHSDALPELLPK-- 176

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            Q  +  ++ EA   IH P    +     + + PA++RL ++EL+A QI+LL  R+ + +
Sbjct: 177 -QYTNGYALKEALYYIHEPPVDANMLQLAQGSHPAQQRLIFEELVAHQISLL-NRRAYIR 234

Query: 250 EIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +I  P     K+ A+K+L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+GKTL
Sbjct: 235 QIASPAFSSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGAGKTL 294

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R +A 
Sbjct: 295 VAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKARAQAE 354

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLL 425
           ++I  G A +I+GTHALFQD++ + KL LVI+DEQHRFGV QRL L  K      PH L+
Sbjct: 355 QQIKEGHAELIVGTHALFQDNVGFAKLGLVIIDEQHRFGVDQRLALRNKGAEQFTPHQLV 414

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     EGK+A
Sbjct: 415 MTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCREGKQA 474

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           YW+C  +E+ +  + ++    +  + E F   +I ++HG+M   +K++VM +FKN   +L
Sbjct: 475 YWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNNELQL 534

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIATTVIEVG+DV ++SI++IENAE  GL+QLHQLRGRVGRG + S C+LLY  PLS+N 
Sbjct: 535 LIATTVIEVGVDVPNSSIMVIENAERLGLSQLHQLRGRVGRGAQASFCVLLYKTPLSQNG 594

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A   A+
Sbjct: 595 QERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAHYVAQ 654

Query: 665 HILTQDPD 672
            +L   P+
Sbjct: 655 QVLKDYPE 662


>gi|254433615|ref|ZP_05047123.1| ATP-dependent DNA helicase RecG [Nitrosococcus oceani AFC27]
 gi|207089948|gb|EDZ67219.1| ATP-dependent DNA helicase RecG [Nitrosococcus oceani AFC27]
          Length = 707

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 260/656 (39%), Positives = 383/656 (58%), Gaps = 23/656 (3%)

Query: 7   NPLF--APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           NPL    P++  +GVG   +  L+++  C      +  DLLF+ P  + DR     I  +
Sbjct: 16  NPLALDTPVTALKGVGPSLANRLARLGLC------KVQDLLFHLPQRYQDRTRVAPIGTL 69

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            + R   I G I Q    +  +RR     L+DGTG+I L FF+  +   +N    G ++ 
Sbjct: 70  QKGREALIEGEI-QLCELRPGRRRSLLCSLSDGTGQIFLRFFH-FSAWQQNSLTPGARVC 127

Query: 125 VTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             G++++    + MVHP Y  +  +   V    +  VY    GL     + +I      L
Sbjct: 128 CFGELRQGAAGLEMVHPDYRCLPEDRPTVTETYLTPVYPATEGLRQSSLRDLIQGVFKDL 187

Query: 183 --PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAG 236
               + +++   LL+    P++ EA   +H P          E   PA++RLA++ELLA 
Sbjct: 188 GEEGIIDYLPSGLLEGVGLPTLNEALIYLHQPPPDAPLNLLAEGKHPAQQRLAFEELLAH 247

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++L  +  +  +     ++ EG++ Q+ L  +PF  T +Q   +++IL DM+Q++ M R
Sbjct: 248 HLSLRQLHLRASRLQAPLLSSEGQLQQRFLATLPFPLTAAQSQVVQEILADMAQESPMQR 307

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VA +A+  AVEAG QAV+MAP  +LA+QH   ++ +    +I VE +T
Sbjct: 308 LLQGDVGSGKTVVAALAILQAVEAGYQAVLMAPTELLAEQHLRVLQGWFCPFEIRVEWLT 367

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                  RR++LER+  G+  + +GTHALFQ+ + ++KL LV+VDEQHRFGV+QRL L +
Sbjct: 368 AKRTTKARRESLERLEGGETPVAVGTHALFQEGVNFHKLGLVVVDEQHRFGVEQRLALRE 427

Query: 417 KA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           K       PH L+MTATPIPRTL +T+  D+D S I + P GR P+ T +    R DEV+
Sbjct: 428 KGRYGNCCPHQLIMTATPIPRTLAMTAYADLDTSVIDQLPPGRIPVATAVASDRRRDEVV 487

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531
            R++    EG++AYW+C  IEE      ++  E    L E      I +IHGRM   +KE
Sbjct: 488 ARVRRACREGRQAYWVCTLIEESDSLQAQAAEESAAELAEALPELCIGLIHGRMKTQEKE 547

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             M +FK+G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S 
Sbjct: 548 RAMAAFKSGDFHLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGAADSY 607

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           C+LLYH PLS+ S  RL+ L+ T DGF IA  DL+ R  GE+LG +Q+G+P++ +A
Sbjct: 608 CVLLYHGPLSELSRARLACLRATNDGFEIARRDLELRGPGEVLGTRQTGLPQYRVA 663


>gi|77164722|ref|YP_343247.1| ATP-dependent DNA helicase RecG [Nitrosococcus oceani ATCC 19707]
 gi|76883036|gb|ABA57717.1| ATP-dependent DNA helicase RecG [Nitrosococcus oceani ATCC 19707]
          Length = 712

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 260/656 (39%), Positives = 383/656 (58%), Gaps = 23/656 (3%)

Query: 7   NPLF--APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           NPL    P++  +GVG   +  L+++  C      +  DLLF+ P  + DR     I  +
Sbjct: 21  NPLALDTPVTALKGVGPSLANRLARLGLC------KVQDLLFHLPQRYQDRTRVAPIGTL 74

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            + R   I G I Q    +  +RR     L+DGTG+I L FF+  +   +N    G ++ 
Sbjct: 75  QKGREALIEGEI-QLCELRPGRRRSLLCSLSDGTGQIFLRFFH-FSAWQQNSLTPGARVC 132

Query: 125 VTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             G++++    + MVHP Y  +  +   V    +  VY    GL     + +I      L
Sbjct: 133 CFGELRQGAAGLEMVHPDYRCLPEDRPTVTETYLTPVYPATEGLRQSSLRDLIQGVFKDL 192

Query: 183 --PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAG 236
               + +++   LL+    P++ EA   +H P          E   PA++RLA++ELLA 
Sbjct: 193 GEEGIIDYLPSGLLEGVGLPTLNEALIYLHQPPPDAPLNLLAEGKHPAQQRLAFEELLAH 252

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++L  +  +  +     ++ EG++ Q+ L  +PF  T +Q   +++IL DM+Q++ M R
Sbjct: 253 HLSLRQLHLRASRLQAPLLSSEGQLQQRFLATLPFPLTAAQSQVVQEILADMAQESPMQR 312

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VA +A+  AVEAG QAV+MAP  +LA+QH   ++ +    +I VE +T
Sbjct: 313 LLQGDVGSGKTVVAALAILQAVEAGYQAVLMAPTELLAEQHLRVLQGWFCPFEIRVEWLT 372

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                  RR++LER+  G+  + +GTHALFQ+ + ++KL LV+VDEQHRFGV+QRL L +
Sbjct: 373 AKRTTKARRESLERLEGGETPVAVGTHALFQEGVNFHKLGLVVVDEQHRFGVEQRLALRE 432

Query: 417 KA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           K       PH L+MTATPIPRTL +T+  D+D S I + P GR P+ T +    R DEV+
Sbjct: 433 KGRYGNCCPHQLIMTATPIPRTLAMTAYADLDTSVIDQLPPGRIPVATAVASDRRRDEVV 492

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531
            R++    EG++AYW+C  IEE      ++  E    L E      I +IHGRM   +KE
Sbjct: 493 ARVRRACREGRQAYWVCTLIEESDSLQAQAAEESAAELAEALPELCIGLIHGRMKTQEKE 552

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             M +FK+G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S 
Sbjct: 553 RAMAAFKSGDFHLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGAADSY 612

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           C+LLYH PLS+ S  RL+ L+ T DGF IA  DL+ R  GE+LG +Q+G+P++ +A
Sbjct: 613 CVLLYHGPLSELSRARLACLRATNDGFEIARRDLELRGPGEVLGTRQTGLPQYRVA 668


>gi|59713067|ref|YP_205843.1| ATP-dependent DNA helicase [Vibrio fischeri ES114]
 gi|59481168|gb|AAW86955.1| ATP-dependent DNA helicase [Vibrio fischeri ES114]
          Length = 693

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 262/672 (38%), Positives = 399/672 (59%), Gaps = 30/672 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L KI            DLLF+ P  + DR     ++ +       
Sbjct: 10  PLTSLAGVGAKVAEKLEKI------GLVSIQDLLFHLPLRYEDRTRVYPMARVHSGLFAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +      Q  KR+   + ++DG G ITL FF     M KN F EG+ +   G+IK+
Sbjct: 64  VQGKVMS-CDMQFGKRKMLLVKISDGNGTITLRFFNFNAGM-KNSFSEGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL-IEA----VYSLPTGLSVDLFKKIIVEALSRL--PV 184
             + + +VHP Y FH       PL IEA    VY    GL  +  + +  +AL  L    
Sbjct: 122 GGSGLEIVHPEYQFHVPSQ---PLEIEASLTPVYPTTDGLRQNTLRSLTDQALELLDKAA 178

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240
           + E + + L   +   ++ +A +IIH P  + +     E   PA++RL  +ELLA  +++
Sbjct: 179 VTELLPQGLYNNQI--TLNQALHIIHRPDPSINLDAFDEGKHPAQQRLIMEELLAQNLSM 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +R + ++E  +P+     + QK+L  +PF+PT +Q+  + +I QD+++ + M+R++QG
Sbjct: 237 LSVRSKGQQEDALPLATLTNLKQKLLAQLPFTPTNAQQRVVAEIEQDLAKPHPMMRLVQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + ++  I V  + G + 
Sbjct: 297 DVGSGKTLVAALAAVQAIEHGYQVALMAPTELLAEQHAANFAHWFESMGITVGWLAGKLT 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--- 417
              + K LERIA G+A +I+GTHALFQ +++++ L LVI+DEQHRFGV QRL+L +K   
Sbjct: 357 GKAKEKELERIASGEAKMIVGTHALFQQNVEFHHLALVIIDEQHRFGVDQRLELREKGQK 416

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D++ S I E P GR PI+T+ +P  R DE++ +++
Sbjct: 417 NGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTIAVPDTRRDEIVNKVR 476

Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
              +++G++AYW+C  I++ +    ++  +   +L       +I ++HGRM   +K+ +M
Sbjct: 477 SACMNDGRQAYWVCTLIDDSEVLEAQAASDTAEALRLQLPELNIGLVHGRMKPKEKQQIM 536

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+L
Sbjct: 537 QEFKEGNLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVL 596

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LYH PLSK +  RLSVL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       
Sbjct: 597 LYHSPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQH 656

Query: 655 LLEIARKDAKHI 666
           L+   ++ A+H+
Sbjct: 657 LIPEVQRIARHL 668


>gi|325123619|gb|ADY83142.1| ATP-dependent DNA helicase [Acinetobacter calcoaceticus PHEA-2]
          Length = 681

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 263/668 (39%), Positives = 397/668 (59%), Gaps = 23/668 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R   + G 
Sbjct: 7   LQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGE 60

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           + +   F   KR+    L+ D  G++TL F Y   + L +    G ++ + G+++     
Sbjct: 61  V-KSIDFPPGKRKSMAALVQDEFGKVTLRF-YHIYKNLTDKIKPGHRLRIFGEVRVGARG 118

Query: 136 IIMVHPH-YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDL 193
           + M HP   + H    +    + A+Y    GL+    ++ + +AL      LPE + K  
Sbjct: 119 LEMYHPEIQLIHEHTPLPKTQLTAIYPSTDGLTQPKLREYVKQALKHHSDALPELLPK-- 176

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            Q  +  ++ EA   IH P    +     + + PA++RL ++EL+A QI+LL  R+ + +
Sbjct: 177 -QYTNGYALKEALYYIHEPPVDANMLQLAQGSHPAQQRLIFEELVAHQISLL-NRRAYIR 234

Query: 250 EIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +I  P     K+ A+K+L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+GKTL
Sbjct: 235 QIASPAFSSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGAGKTL 294

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R +A 
Sbjct: 295 VAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKARAQAE 354

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLL 425
           ++I  G A +I+GTHALFQD++ + KL LVI+DEQHRFGV QRL L  K      PH L+
Sbjct: 355 QQIKEGHAELIVGTHALFQDNVGFAKLGLVIIDEQHRFGVDQRLALRNKGAEQFTPHQLV 414

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     +GK+A
Sbjct: 415 MTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCRDGKQA 474

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           YW+C  +E+ +  + ++    +  + E F   +I ++HG+M   +K++VM +FKN   +L
Sbjct: 475 YWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNNELQL 534

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIATTVIEVG+DV ++SI++IENAE  GL+QLHQLRGRVGRG + S C+LLY  PLS+N 
Sbjct: 535 LIATTVIEVGVDVPNSSIMVIENAERLGLSQLHQLRGRVGRGAQASFCVLLYKTPLSQNG 594

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A   A+
Sbjct: 595 QERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAHYVAQ 654

Query: 665 HILTQDPD 672
            +L   P+
Sbjct: 655 QVLKDYPE 662


>gi|119947094|ref|YP_944774.1| ATP-dependent DNA helicase RecG [Psychromonas ingrahamii 37]
 gi|119865698|gb|ABM05175.1| ATP-dependent DNA helicase RecG [Psychromonas ingrahamii 37]
          Length = 690

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 272/677 (40%), Positives = 395/677 (58%), Gaps = 26/677 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+  +GVG K S  L+KI            DLLF+ P  + DR     I+++ +   V+
Sbjct: 7   PLTALKGVGIKASQRLAKI------GLHSVADLLFHLPLHYQDRTRIYAIADLKDSMQVS 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +      Q  KRR  K  ++DG+G +TL FF+  T   +N F +G  I   G+ ++
Sbjct: 61  VQGKVLS-CDLQSGKRRILKCKISDGSGSVTLNFFHFNTAQ-QNSFVKGALIKCFGEFRR 118

Query: 132 LKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             +   + HP Y   N+   +     +  +Y    GL  +  + +  +AL  L    + E
Sbjct: 119 GYHGFEVTHPDYRLLNAMQQSHVEETLTPIYPSTEGLKQNSLRSLTEQALLHLEQHQIDE 178

Query: 188 WIEKDLLQKKSFP-SIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIALLL 242
            +   LL   + P S+++A   IH P      E     T PA++RL  +EL A QI++L 
Sbjct: 179 LLPTHLL---AHPISLSDALFYIHRPPPDASIEQLENKTHPAQQRLIIEELSAQQISMLS 235

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   I +   G +  ++L+++PFS T +Q     +I QD+ Q   M+R++QGDV
Sbjct: 236 LRVNAQQHQAIAVKESGLLQDRLLQSLPFSLTNAQHRVNWEIQQDLKQTIPMMRLVQGDV 295

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA IA  + +EAG Q  +MAP  +LA+QH    +K+     + V +++G M   
Sbjct: 296 GSGKTLVAAIAALSVIEAGYQVALMAPTELLAEQHLLNFQKWFAALDVSVGMLSGKMRVK 355

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419
            +R  LE I+ G + +++GTHALFQ+S+Q+  L L+IVDEQHRFGV QRL L +K     
Sbjct: 356 EKRSQLENISLGLSKMVVGTHALFQESVQFNNLALIIVDEQHRFGVHQRLALREKGRSGD 415

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KV 477
            APH L MTATPIPRTL +T+  D+++S I E P GR  IKTV +   R DEVI+R+ + 
Sbjct: 416 FAPHQLTMTATPIPRTLAMTAYADLNVSVIDELPPGRTAIKTVALVDKRRDEVIQRVYQA 475

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             +EG++AYW+C  IEE +    ++     N +        I ++HGRM   +K+SVMD+
Sbjct: 476 CKNEGRQAYWVCTLIEESEVLECQTAENTANEMQLALPDLRIGLVHGRMKANEKQSVMDA 535

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRGE  S C+LLY
Sbjct: 536 FKEGQLDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGEVASHCVLLY 595

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSK +  RL VL+ + DGF IAE+DL  R  GE+LG +Q+G+ +F IA      SLL
Sbjct: 596 KNPLSKTAQRRLQVLRESNDGFYIAEQDLAIRGPGEVLGTRQTGVAEFKIADLLRDQSLL 655

Query: 657 EIARKDAKHILTQDPDL 673
             A++ A  ++   P+L
Sbjct: 656 PQAQQLAFQLMHSFPEL 672


>gi|308047829|ref|YP_003911395.1| ATP-dependent DNA helicase RecG [Ferrimonas balearica DSM 9799]
 gi|307630019|gb|ADN74321.1| ATP-dependent DNA helicase RecG [Ferrimonas balearica DSM 9799]
          Length = 698

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 266/679 (39%), Positives = 398/679 (58%), Gaps = 35/679 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERIV 70
           P++T +GVG K +    K++  G     R + DLL + P  + DR     ++ ++  +  
Sbjct: 16  PVTTLKGVGDKLA---EKLLRLG----VRSVGDLLLHLPLRYEDRTRIWPVAALTPGQNA 68

Query: 71  TITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           T+ G + S + S+   +RR   + L DG+G I+L FF       K+ F  G ++   G+ 
Sbjct: 69  TVEGEVLSANVSYG--RRRRMTVQLADGSGTISLHFFNFALAQ-KDSFVVGARVRAFGEA 125

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALS--RLP 183
           +     I MVHP Y  H   +   PL+E     VY    GL   + +K+  EAL+  R  
Sbjct: 126 RAGMRHIEMVHPEY--HVLGEHTHPLLEESLTPVYPTTEGLKQAILRKLTDEALTLLRHH 183

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAGQ 237
            LPE + + L   +  P +++A + IH P    D   T       PA++RL  +ELLA  
Sbjct: 184 PLPELLPEGLYPHQ-LP-LSDALHFIHRP--PPDASLTQLESGEHPAQQRLVMEELLAQN 239

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +++L +R        +P+  +  + Q+ L  +PF PT +Q+  + +I  D++Q   M+R+
Sbjct: 240 LSMLKLRADSGSHKALPLQPDTNLLQRFLAALPFQPTGAQQRVVNEIAADLNQSEPMMRL 299

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH +    + +   + V  + G
Sbjct: 300 VQGDVGSGKTLVAALAALHAISQGYQVALMAPTELLAEQHAQAFANWFEPLGLPVAWLAG 359

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +    R  ALERIA G+A +++GTHA+FQ  + ++ L LVIVDEQHRFGV QRL L +K
Sbjct: 360 KLKGKAREAALERIASGEARMVVGTHAIFQSQVAFHHLALVIVDEQHRFGVHQRLTLREK 419

Query: 418 ----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  PH L+MTATPIPRTL +T+  D+D+S I E P GR PI TV IP +R D+V+E
Sbjct: 420 GLKDGCYPHQLIMTATPIPRTLAMTAYADLDVSVIDELPPGRTPITTVAIPDSRRDDVVE 479

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           R++   S G++AYW+C  IEE +    ++  +    L E     +I ++HGRM   +K+ 
Sbjct: 480 RVRQACSNGRQAYWVCTLIEESEVLQCQAAEDTATELAERLPELNIGLVHGRMKADEKQQ 539

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM++FK     LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C
Sbjct: 540 VMNAFKANELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHC 599

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LL+HPPLSK + +RL VL+ + DGF+IA+ DL+ R  GE+LG +Q+G+    IA     
Sbjct: 600 VLLFHPPLSKTAQSRLGVLRESNDGFVIAQRDLEIRGPGEVLGTRQTGLADLKIADLVRD 659

Query: 653 DSLLEIARKDAKHILTQDP 671
            +L+   ++ A+H++ + P
Sbjct: 660 AALIPQVQRLAQHLMDRYP 678


>gi|148654135|ref|YP_001281228.1| ATP-dependent DNA helicase RecG [Psychrobacter sp. PRwf-1]
 gi|148573219|gb|ABQ95278.1| ATP-dependent DNA helicase RecG [Psychrobacter sp. PRwf-1]
          Length = 747

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 266/716 (37%), Positives = 399/716 (55%), Gaps = 62/716 (8%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+    GVG K    L ++        +R  DLL + P  + DR     IS++ + +   
Sbjct: 26  PVQVLAGVGSKIEGQLEQL------GVSRLFDLLLHLPRDYEDRSRLVNISDLQDGQSAL 79

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G ++    +   KR    +++ D TG I L FF     +++ +   G ++ + G++K 
Sbjct: 80  IEGQVT----YVDNKRGGMTVVIEDATGAIQLRFFKVYASLVQTMTL-GTRLRLFGEVKI 134

Query: 132 LKNRIIMVHPHY--IFHNSQDVN------FPLIEAVY----------SLPT----GLSVD 169
            +  + M HP Y  +   +  VN      +P ++ ++          +L T    GL + 
Sbjct: 135 SRYGMQMAHPEYNMVTAGAPVVNTGLQPIYPAVKGLHQNKLRTLVKLALQTVHQQGLPLT 194

Query: 170 LFKKIIVEALSRLPV-LPE---WIEKDLLQKKSFPS-----------IAEAFNIIHNPRK 214
           +F +   +A++ LP  LP     +      +++ PS           + EA  +IH P  
Sbjct: 195 VFDEADWQAVNHLPAPLPTNSYGLPSSAASQQTSPSPNSAPSWQHLTLFEALTLIHTPPM 254

Query: 215 AKDFEW-----------TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263
             D              T PA +RL  +EL A Q+++L  RKQ  +      + +  +A+
Sbjct: 255 HTDITLQAAQLEQLKARTHPACQRLIVEELTAHQLSMLYRRKQLHQHKAPKCDGDSPLAE 314

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           K+L N+PFS T +Q+  IK+I  DM+    MLR++QGDVG+GKTLVA +A   A+++G Q
Sbjct: 315 KLLANLPFSLTGAQDRVIKEITSDMATSIPMLRLVQGDVGAGKTLVAALAACYALDSGWQ 374

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             +MAP  ILA+QH    K + +   I V  + G      RR+AL  +A  +  I++GTH
Sbjct: 375 VAVMAPTEILAEQHLINFKAWFEPLGIGVGWLAGKQTAKQRREALADVAENEVQIVVGTH 434

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSL 440
           ALFQD++ + KL L I+DEQHRFGV+QR+ LT K  A   PH L+MTATPIPRTL +++ 
Sbjct: 435 ALFQDAVVFAKLGLAIIDEQHRFGVEQRMALTNKGVANSTPHQLIMTATPIPRTLAMSAY 494

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           GD+D S I E P GR PI TV I   R DEVIER+     EGK+AYW+CP +++    N 
Sbjct: 495 GDMDTSIIDELPPGRTPITTVTIDRARRDEVIERIAANCKEGKQAYWVCPLVDDSSTLNA 554

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           ++    F  L E     I ++HG+M   +K+ +M +FKN    LL+ATTVIEVG+DV +A
Sbjct: 555 QAAEATFADLSERLDIRIGMVHGKMKSKEKQEIMAAFKNAELDLLVATTVIEVGVDVPNA 614

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           S+++IENAE  GL+QLHQLRGRVGRG   S C+LLY  PLS+    RL+VL+++ DGF+I
Sbjct: 615 SLMVIENAERLGLSQLHQLRGRVGRGSTKSFCVLLYQTPLSETGIERLNVLRDSNDGFVI 674

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           A++DL+ R  GE+LG +Q+G   + ++     ++LL IA   AK ++  D   T V
Sbjct: 675 AQKDLQLRGPGELLGKRQTGNIGYYVSDLTRDENLLMIASHLAKRLINDDARKTEV 730


>gi|152998385|ref|YP_001343220.1| ATP-dependent DNA helicase RecG [Marinomonas sp. MWYL1]
 gi|150839309|gb|ABR73285.1| ATP-dependent DNA helicase RecG [Marinomonas sp. MWYL1]
          Length = 693

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 258/673 (38%), Positives = 400/673 (59%), Gaps = 21/673 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +GVG   +  L+K+    + N  +  DLLF+ P  + DR     I  +       I G 
Sbjct: 13  LKGVGDAMAEKLAKL----HLNTVQ--DLLFHLPIRYQDRTRVVPIGMLRFGDEAVIEGQ 66

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           ++  +  ++ KRR     + D TG + L FF+      K     G+++   G+I++    
Sbjct: 67  VT-GAEIKMGKRRSLLCRIKDHTGTLCLRFFHFSAAQ-KKQLESGKRVRCFGEIRRGSTG 124

Query: 136 IIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEK 191
             + HP Y  I  +        +  +Y L  GL+    +++  +AL RL    L EW+  
Sbjct: 125 FEIYHPEYKVIGEDETQEETAQLTPIYPLTDGLTQTKIRQLCEQALERLTPYNLQEWLPD 184

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIALLLMRKQF 247
           ++  + S P +++A + +H+P +  + E     T PA+ RL+++EL+A Q++L+  R + 
Sbjct: 185 EIRSQFSLPPLSDAIHFLHHPSREANLELLRSGTHPAQYRLSFEELMAHQLSLIGKRMKA 244

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K++  I +   G+++Q++L+ +PFSPT +Q+   ++IL D++  + MLR++QGDVGSGKT
Sbjct: 245 KQDAAIKVQAAGELSQRLLQQLPFSPTNAQQRVFQEILNDLATGHPMLRLVQGDVGSGKT 304

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           LVA +A A+ V+AG Q  IMAP  ILA+QHY    ++ +   + V  + G +    R K 
Sbjct: 305 LVAALAAASVVQAGYQVAIMAPTEILAEQHYINFTQWFEPLGLKVAWMIGKLKGKTREKE 364

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHV 423
           L  IA G A II+GTHALFQD++++ +L L I+DEQHRFGV QR+ L +K       PH 
Sbjct: 365 LADIASGAAQIIVGTHALFQDTVEFDRLALAIIDEQHRFGVHQRMALREKGMKHGFQPHQ 424

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +++  D+D S I E P GR P+ T+++   R  EVI+R+K    EGK
Sbjct: 425 LIMTATPIPRTLAMSAYADLDCSIIDELPPGRTPVNTIVVSDQRRQEVIDRVKSACEEGK 484

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           +AYW+C  IEE +    ++  +    L E   + SI ++HGR+   +K  +M  FK G  
Sbjct: 485 QAYWVCTLIEESEALQCQAAEDTAILLQEQLGNLSIGLVHGRLKAQEKADIMARFKAGEI 544

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           +LL+ATTVIEVG+DV ++S+++IEN E  GLAQLHQLRGRVGRG+  S C+LLY  PL +
Sbjct: 545 QLLVATTVIEVGVDVPNSSLMVIENPERLGLAQLHQLRGRVGRGQTASHCVLLYKAPLGQ 604

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               RLS ++ T DGF IAE+DL+ R  GE+LG +Q+G+ +F +A  +   +LL+  +K 
Sbjct: 605 QGKERLSTMRETSDGFKIAEKDLELRGPGELLGTRQTGLWEFKVADLQRDKNLLDDVQKA 664

Query: 663 AKHILTQDPDLTS 675
           A  + ++ PD  S
Sbjct: 665 AALLHSRYPDRVS 677


>gi|299768653|ref|YP_003730679.1| ATP-dependent DNA helicase RecG [Acinetobacter sp. DR1]
 gi|298698741|gb|ADI89306.1| ATP-dependent DNA helicase RecG [Acinetobacter sp. DR1]
          Length = 681

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 264/668 (39%), Positives = 395/668 (59%), Gaps = 23/668 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R   + G 
Sbjct: 7   LQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIAMNQLVVGRSYLLEGE 60

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           + +   F   KR+    L+ D  G++TL F Y   + L +    G ++ + G+++     
Sbjct: 61  V-RSIDFPPGKRKSMAALVQDEFGKVTLRF-YHIYKNLTDKIKPGHRLRIFGEVRVGARG 118

Query: 136 IIMVHPH-YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDL 193
           + M HP   + H    +    + A+Y    GL+    ++ + +AL      LPE + K  
Sbjct: 119 LEMYHPEIQLIHEHTPLPKTQLTAIYPSTDGLTQPKLREYVKQALKHHSDALPELLPKKY 178

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKK 249
               +   + EA   IH P    +     + + PA++RL ++EL+A QI+LL  R+ + +
Sbjct: 179 TNGYA---LKEALYYIHEPPIDANMLQLAQGSHPAQQRLIFEELVAHQISLL-NRRAYIR 234

Query: 250 EIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +I  P     KI A+K+L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+GKTL
Sbjct: 235 QIASPAFSSSKILAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGAGKTL 294

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R +A 
Sbjct: 295 VAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKARAQAE 354

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLL 425
           ++I  G A +I+GTHALFQD++ + KL LVI+DEQHRFGV QRL L  K      PH L+
Sbjct: 355 QQIKEGHAELIVGTHALFQDNVGFAKLGLVIIDEQHRFGVDQRLALRNKGAEQFTPHQLV 414

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     +GK+A
Sbjct: 415 MTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCRDGKQA 474

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           YW+C  +E+ +  + ++    +  + E F   +I ++HG+M   +K+SVM +FKN   +L
Sbjct: 475 YWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQSVMQAFKNNELQL 534

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIATTVIEVG+DV ++SI++IENAE  GL+QLHQLRGRVGRG + S C+LLY  PLS+N 
Sbjct: 535 LIATTVIEVGVDVPNSSIMVIENAERLGLSQLHQLRGRVGRGAQASFCVLLYKTPLSQNG 594

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A   A+
Sbjct: 595 QERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAHYVAQ 654

Query: 665 HILTQDPD 672
            +L   P+
Sbjct: 655 QVLKDYPE 662


>gi|146280531|ref|YP_001170684.1| ATP-dependent DNA helicase RecG [Pseudomonas stutzeri A1501]
 gi|145568736|gb|ABP77842.1| ATP-dependent DNA helicase RecG [Pseudomonas stutzeri A1501]
          Length = 690

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 259/676 (38%), Positives = 393/676 (58%), Gaps = 21/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L+++       ET   D+LF+ P  + DR     I  +   +   
Sbjct: 8   PVTALKGVGAALAEKLARV-----GLET-LQDVLFHLPLRYQDRTRVVPIGSLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G ++  +   + +RR   + L DG+G ++L  FY  ++  K     G ++   G+ + 
Sbjct: 62  IEGIVA-GADIVMGRRRSLLVRLQDGSGTLSL-RFYHFSQAQKEAMKRGTQLRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPEW 188
             + + + HP Y     +       +  +Y    GL+    + +  +ALSRL    LP+W
Sbjct: 120 GASGLEIYHPEYRALTGEPAPVEQTLTPIYPTTEGLTQQRLRNLSEQALSRLGPHSLPDW 179

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLLMR 244
           +  +L ++     + +A   +H P    D E  +  R     RLA++ELL  Q++L  +R
Sbjct: 180 LPAELAREYRLGPLDQALRYLHRPPPDADLEELAEGRHWAQHRLAFEELLTHQLSLQRLR 239

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           ++ + +    +    ++ Q+ L N+ FSPT +Q+    +I  D++Q   MLR++QGDVG+
Sbjct: 240 ERVRAQQAPQLPPAKRLPQRFLANLGFSPTGAQQRVGAEIAYDLAQDEPMLRLVQGDVGA 299

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA +A   A+EAG Q  +MAP  ILA+QH+    K+ +   I V  + G +    R
Sbjct: 300 GKTVVAALAALQALEAGYQVALMAPTEILAEQHFLNFSKWLEPLGIEVAWLAGKLKGKAR 359

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----A 420
             ALE+IA G   +++GTHALFQD + + +L LVI+DEQHRFGVQQRL L QK       
Sbjct: 360 AAALEQIAGG-CPMVVGTHALFQDEVAFKRLALVIIDEQHRFGVQQRLALRQKGIDGRLC 418

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH L+MTATPIPRTL +++  D+D S + E P GR P+ T++I  +R  EVIER+++  +
Sbjct: 419 PHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRLEVIERVRIACN 478

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           EG++AYW+C  IEE +E   ++    F  L        + +IHGRM   +K +VM+ FK 
Sbjct: 479 EGRQAYWVCTLIEESEELTCQAAETTFEDLSAALVGLRVGLIHGRMKPAEKAAVMEQFKR 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYHPP
Sbjct: 539 GELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPP 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RL++++ T DGFLIAE+DL+ R  GE+LG +Q+G+ +F +A       LL   
Sbjct: 599 LSQLGRERLAIMRETCDGFLIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDAELLPAV 658

Query: 660 RKDAKHILTQDPDLTS 675
           R  A+ +LT+ P   S
Sbjct: 659 RDAAQELLTRWPQHVS 674


>gi|255319827|ref|ZP_05361032.1| ATP-dependent DNA helicase RecG [Acinetobacter radioresistens SK82]
 gi|262380359|ref|ZP_06073513.1| ATP-dependent DNA helicase RecG [Acinetobacter radioresistens
           SH164]
 gi|255303146|gb|EET82358.1| ATP-dependent DNA helicase RecG [Acinetobacter radioresistens SK82]
 gi|262297805|gb|EEY85720.1| ATP-dependent DNA helicase RecG [Acinetobacter radioresistens
           SH164]
          Length = 681

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 271/678 (39%), Positives = 398/678 (58%), Gaps = 33/678 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
            A +   +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R 
Sbjct: 1   MATVHQLQGVGTASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRS 54

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
             + G +S    F   KR+   +LL D  G++TL F Y   + L +    G ++ V G++
Sbjct: 55  YLLEGTVSS-IDFPPGKRKSMAVLLEDDFGKVTLRF-YHIYKALTDKMRSGNRLRVFGEV 112

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSR----LP 183
           +     + + HP  I   S     P   + A+Y    GL+    ++ + +AL +    LP
Sbjct: 113 RVGARGLELYHPE-IQQISAQTALPKTRLTAIYPSTEGLTQAKLREYVRQALEQHSENLP 171

Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQI 238
            +LPE             ++ EA   IH P       +  + + PA++RL ++EL+A QI
Sbjct: 172 ELLPEKFTNGY-------ALKEALEYIHEPPIDANMQQLMQGSHPAQQRLIFEELVAHQI 224

Query: 239 ALLLMRKQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +LL  R+ + +EI  P      I A+K+L N+PF+ T +Q    K+I+ D+ Q   MLR+
Sbjct: 225 SLL-TRRAYIREIEAPAFEPSTILAKKLLANLPFNMTGAQRRVSKEIMIDLKQHQPMLRL 283

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVG+GKTLVA +A   A+EAG Q  +MAP  ILA+QHY   K++ +   I V  ++G
Sbjct: 284 VQGDVGAGKTLVAAVAACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLGIQVAWLSG 343

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 R +A   I  G A +++GTHALFQ+++++ +L LVI+DEQHRFGV QRL L  K
Sbjct: 344 KQKGKARTQAEAIIRGGLAQLVVGTHALFQENVEFARLGLVIIDEQHRFGVDQRLALRNK 403

Query: 418 AT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                 PH L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R
Sbjct: 404 GAEQMTPHQLVMTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVLQR 463

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +     EGK+AYW+C  +E+ +  + ++    +  + E F S +I ++HG+M   +K+SV
Sbjct: 464 IATNCQEGKQAYWVCTLVEQSETLDAQAAEATYAEIKERFPSLNIGLVHGKMKADEKQSV 523

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FKN   +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG + S C 
Sbjct: 524 MQKFKNNELQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCA 583

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLS+N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D
Sbjct: 584 LLYKTPLSQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVAKLERDD 643

Query: 654 SLLEIARKDAKHILTQDP 671
            LL  A   A+ +L   P
Sbjct: 644 HLLTEAHYVAEQVLKDYP 661


>gi|167036344|ref|YP_001671575.1| ATP-dependent DNA helicase RecG [Pseudomonas putida GB-1]
 gi|166862832|gb|ABZ01240.1| ATP-dependent DNA helicase RecG [Pseudomonas putida GB-1]
          Length = 692

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 255/678 (37%), Positives = 388/678 (57%), Gaps = 23/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG+  +  L+K+   G  N     D+LF+ P  + DR     I ++   +   
Sbjct: 8   PVTVLKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGQLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +S  S   + KRR   + L DG+G +TL  FY  +   K     G  +   G+ + 
Sbjct: 62  IEGVVS-GSDVTMGKRRSLVVRLGDGSGVLTL-RFYHFSNAQKEGLKRGTHLRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
             + + + HP Y   N  +   P+   +  +Y    GL+    + +  ++L  L    LP
Sbjct: 120 GASGLEIYHPEYRALNGDEPPPPVEQTLTPIYPSTEGLTQQRLRLLCQQSLGLLGPRSLP 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           +W+  +L +      + EA   +HNP    D     E    A+ RLA++ELL  Q++   
Sbjct: 180 DWLPDELARDYQLAPLDEAIRYLHNPPADADLDELAEGQHWAQHRLAFEELLTHQLSQQR 239

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  +      +    ++  + L N+ F PT +Q+    +I  D+SQ   M+R++QGDV
Sbjct: 240 LRESLRSLRAPVLPKATRLQAQYLANLGFQPTGAQQRVANEIAYDLSQHAPMMRLVQGDV 299

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+VA +A    +EAG Q  +MAP  ILA+QHY   K++ +   I V  + G +   
Sbjct: 300 GAGKTVVAALAALQGLEAGYQVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKLKGK 359

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R  +LE+IA+G A +++GTHALFQ+ +++  L L I+DEQHRFGVQQRL L +K  A  
Sbjct: 360 ARAASLEQIANG-APMVVGTHALFQEEVKFKHLALAIIDEQHRFGVQQRLALRKKGVAGE 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++  
Sbjct: 419 LCPHQLIMTATPIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAA 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K  +M  F
Sbjct: 479 CAEGRQAYWVCTLIEESEELTCQAAESTYEELGSALGELRVGLIHGRMKPAEKAEIMAQF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYH
Sbjct: 539 KAGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL 
Sbjct: 599 PPLSQIGRERLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 658

Query: 658 IARKDAKHILTQDPDLTS 675
             R  A+ ++ + PD  S
Sbjct: 659 AVRDAAQALVARWPDHVS 676


>gi|197336391|ref|YP_002157245.1| ATP-dependent DNA helicase RecG [Vibrio fischeri MJ11]
 gi|197317881|gb|ACH67328.1| ATP-dependent DNA helicase RecG [Vibrio fischeri MJ11]
          Length = 693

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 261/672 (38%), Positives = 398/672 (59%), Gaps = 30/672 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L KI            DLLF+ P  + DR     ++ +       
Sbjct: 10  PLTSLAGVGAKVAEKLEKI------GLVSIQDLLFHLPLRYEDRTRVYPMARVHSGLFAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +      Q  KR+   + ++DG G ITL FF     M KN F EG+ +   G+IK+
Sbjct: 64  VQGKVMS-CDMQFGKRKMLLVKISDGNGTITLRFFNFNAGM-KNSFSEGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL-IEA----VYSLPTGLSVDLFKKIIVEALSRL--PV 184
             + + +VHP Y FH       PL IEA    VY    GL  +  + +  +AL  L    
Sbjct: 122 GGSGLEIVHPEYQFHVPSQ---PLEIEASLTPVYPTTDGLRQNTLRSLTDQALELLDKAA 178

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240
           + E + + L   +   ++ +A +IIH P  + +     E   PA++RL  +ELLA  +++
Sbjct: 179 VTELLPQGLYNNQI--TLNQALHIIHRPDPSINLDAFDEGKHPAQQRLIMEELLAQNLSM 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +R + ++E  +P+     + QK+L  +PF+PT +Q+  + +I QD+++ + M+R++QG
Sbjct: 237 LSVRSKGQQEDALPLATLTNLKQKLLAQLPFTPTNAQQRVVAEIEQDLAKPHPMMRLVQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + ++  I V  + G + 
Sbjct: 297 DVGSGKTLVAALAAVQAIEHGYQVALMAPTELLAEQHAANFAHWFESMGITVGWLAGKLT 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--- 417
              + K LERI  G+A +I+GTHALFQ +++++ L LVI+DEQHRFGV QRL+L +K   
Sbjct: 357 GKAKEKELERITSGEAKMIVGTHALFQQNVEFHHLALVIIDEQHRFGVDQRLELREKGQK 416

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D++ S I E P GR PI+T+ +P  R DE++ +++
Sbjct: 417 NGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTIAVPDTRRDEIVNKVR 476

Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
              +++G++AYW+C  I++ +    ++  +   +L       +I ++HGRM   +K+ +M
Sbjct: 477 SACMNDGRQAYWVCTLIDDSEVLEAQAASDTAEALRLQLPELNIGLVHGRMKPKEKQQIM 536

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+L
Sbjct: 537 QEFKEGNLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVL 596

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LYH PLSK +  RLSVL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       
Sbjct: 597 LYHSPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQH 656

Query: 655 LLEIARKDAKHI 666
           L+   ++ A+H+
Sbjct: 657 LIPEVQRIARHL 668


>gi|327478768|gb|AEA82078.1| ATP-dependent DNA helicase RecG [Pseudomonas stutzeri DSM 4166]
          Length = 690

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 259/676 (38%), Positives = 393/676 (58%), Gaps = 21/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L+++       ET   D+LF+ P  + DR     I  +   +   
Sbjct: 8   PVTALKGVGAALAEKLARV-----GLET-LQDVLFHLPLRYQDRTRVVPIGSLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G ++  +   + +RR   + L DG+G ++L  FY  ++  K     G ++   G+ + 
Sbjct: 62  IEGIVA-GADIVMGRRRSLLVRLQDGSGTLSL-RFYHFSQAQKEAMKRGTQLRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPEW 188
             + + + HP Y     +       +  +Y    GL+    + +  +ALSRL    LP+W
Sbjct: 120 GASGLEIYHPEYRALTGEPAPVEQTLTPIYPTTEGLTQQRLRNLSEQALSRLGPHSLPDW 179

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLLMR 244
           +  +L ++     + +A   +H P    D E  +  R     RLA++ELL  Q++L  +R
Sbjct: 180 LPAELAREYRLGPLDQALRYLHRPPPDADLEELAEGRHWAQHRLAFEELLTHQLSLQRLR 239

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           ++ + +    +    ++ Q+ L N+ FSPT +Q+    +I  D++Q   MLR++QGDVG+
Sbjct: 240 ERVRAQQAPQLPPAKRLPQRFLANLGFSPTGAQQRVGAEIAYDLAQDEPMLRLVQGDVGA 299

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA +A   A+EAG Q  +MAP  ILA+QH+    K+ +   I V  + G +    R
Sbjct: 300 GKTVVAALAALQALEAGYQVALMAPTEILAEQHFLNFSKWLEPLGIEVAWLAGKLKGKAR 359

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----A 420
             ALE+IA G   +++GTHALFQD + + +L LVI+DEQHRFGVQQRL L QK       
Sbjct: 360 AAALEQIAGG-CPMVVGTHALFQDEVVFKRLALVIIDEQHRFGVQQRLALRQKGIDGRLC 418

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH L+MTATPIPRTL +++  D+D S + E P GR P+ T++I  +R  EVIER+++  +
Sbjct: 419 PHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRLEVIERVRIACN 478

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           EG++AYW+C  IEE +E   ++    F  L        + +IHGRM   +K +VM+ FK 
Sbjct: 479 EGRQAYWVCTLIEESEELTCQAAETTFEDLSAALVGLRVGLIHGRMKPAEKAAVMEQFKR 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYHPP
Sbjct: 539 GELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPP 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RL++++ T DGFLIAE+DL+ R  GE+LG +Q+G+ +F +A       LL   
Sbjct: 599 LSQLGRERLAIMRETCDGFLIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDAELLPAV 658

Query: 660 RKDAKHILTQDPDLTS 675
           R  A+ +LT+ P   S
Sbjct: 659 RDAAQELLTRWPQHVS 674


>gi|254281548|ref|ZP_04956516.1| ATP-dependent DNA helicase RecG [gamma proteobacterium NOR51-B]
 gi|219677751|gb|EED34100.1| ATP-dependent DNA helicase RecG [gamma proteobacterium NOR51-B]
          Length = 715

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 262/677 (38%), Positives = 395/677 (58%), Gaps = 26/677 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEE 67
           L + ++  RGVG K +    K+ + G     R I DLLFY P  + DR     I+ + + 
Sbjct: 33  LNSSITRLRGVGPKLA---EKLADLG----IRAIEDLLFYFPIRYEDRTRVTPIAALRDG 85

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
               +   ++  +S    +RR     + DG+G ++L  F+ +   LK  F  G  I + G
Sbjct: 86  VNAVVVAEVTL-ASIVPGRRRALVAKVADGSGVMSLRLFHFRNAQLKQ-FSPGAPIMLYG 143

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           + ++    + MVHP Y   +        +  VY    GL   L++++  +AL+   VL +
Sbjct: 144 QPRRGSGAVEMVHPEYRIGSETPELESHLTPVYPTIEGLGQALWRRLCGQALT---VLDK 200

Query: 188 WIEKDLLQ---KKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIAL 240
               DLL      SF  + EA   +H+P    R     E   PA+ RLA +EL+A Q+++
Sbjct: 201 EPPPDLLSPYYSGSFGWV-EALRFLHHPPPDARLESIIECDHPAQLRLALEELVAHQLSM 259

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R++ +++   P+   G + +++L ++PF PT +QE    +IL D+S+   MLR++QG
Sbjct: 260 RQLREKEREQPAPPLRGSGALRRQLLASLPFQPTAAQERVSSEILDDLSRPTPMLRLVQG 319

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA IA   A++AG Q  +MAP  +LA+QH +  K +     I V  +TG + 
Sbjct: 320 DVGSGKTLVAAIAALEAIDAGFQVALMAPTELLAEQHLQNFKTWFSPLGIEVGWLTGRVK 379

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R+  L  +  G + I++GTHALFQD + + +L LVIVDEQHRFGV QRL LT+K   
Sbjct: 380 GKQRQAILAAVTAGDSKILVGTHALFQDDVSFARLGLVIVDEQHRFGVHQRLSLTEKGGN 439

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L++TATPIPRTL + +  D+D S I E P GR P++T ++  +R   VIER+ V
Sbjct: 440 SGHPHQLVLTATPIPRTLSMVAYADLDCSIIDELPPGRTPVQTTLLDNSRRAAVIERVGV 499

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMD 535
              EG++AYW+C  I+E      ++       L      T  + +IHGR+   +KESVM 
Sbjct: 500 ACGEGRQAYWVCTVIDESDTLTVQAAEATAGHLTGALPDTVRVGLIHGRLPGSEKESVMA 559

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG + S C+LL
Sbjct: 560 AFKRGDIDLLVATTVIEVGVDVANASLMIIENPERLGLAQLHQLRGRVGRGADKSHCLLL 619

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLS+ +  RL+V++++ DGF IAE+DL+ R  GE+LG +Q+G+ +F +A+   H++L
Sbjct: 620 YQTPLSQTARARLNVMRDSNDGFFIAEQDLRLRGPGELLGTRQTGLAQFRVAKLPEHEAL 679

Query: 656 LEIARKDAKHILTQDPD 672
           L+  +  +  I  + P+
Sbjct: 680 LDQVQVISDRIAAESPE 696


>gi|162147668|ref|YP_001602129.1| ATP-dependent DNA helicase recG [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786245|emb|CAP55827.1| putative ATP-dependent DNA helicase recG [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 725

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 266/725 (36%), Positives = 409/725 (56%), Gaps = 42/725 (5%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           R   L PL APL +  GVG   +  L++ +        R IDLLF+ P S +DR   P++
Sbjct: 17  RDDNLGPLLAPLGSLPGVGPALAKLLARAVRG-----QRVIDLLFHLPESVVDRGLSPQL 71

Query: 62  SEISEE------RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF----YRKTE 111
           S   E       R         + ++ Q++ RR       D     T +FF     R+T 
Sbjct: 72  SRRPESVVDHRYRPSLRNAVPGRGTTMQVRVRR------FDAPARGTRVFFSPLEARRTG 125

Query: 112 MLKNVFFE---------GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
           + + VF           G  + V+G +    +R+ M HP +I         P +E V+ L
Sbjct: 126 VGELVFLSPTQARQMRVGATVPVSGTLDAFGDRLQMAHPDHIVPGGDIDRIPALEPVWPL 185

Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF---- 218
             GL     +  + +A  R P LPEW++  L+ ++ +P    A   +H P    D     
Sbjct: 186 TAGLFPRHVRAALHQAFLRFPPLPEWLDSVLVARRHWPDFETALRQLHCPEAFPDLLRGD 245

Query: 219 EWTSP---ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
            W +    AR+RLA DELLA Q+A+   R++ +   G  I   G +  + L    ++PT 
Sbjct: 246 AWQAAGERARQRLACDELLAEQVAMSEARRRNRNRPGRSIVGTGTLRAEALARFGYTPTG 305

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q  A+++I  D++    M+R+LQGDVG+GKTLVA++AM AA EAG QAV+MAP  ILA+
Sbjct: 306 AQHRAVREIDSDLAASYPMMRLLQGDVGAGKTLVAMLAMLAAAEAGHQAVLMAPTEILAR 365

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QH    +K      + V  ++G++    RR  LE IA G+A +++GTHALFQD + +  L
Sbjct: 366 QHLATFQKLAP---VPVAFLSGSVKGRARRTVLEDIASGRAPLVVGTHALFQDKVVFDDL 422

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L ++DEQHRFGV+QRL L +K     +L+MTATPIPRTL+LT  G++ +S++ EKPAGR
Sbjct: 423 ALAVIDEQHRFGVEQRLLLGEKGDRADILVMTATPIPRTLLLTQWGEMQVSRLNEKPAGR 482

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            P++T +  +  + +V++ +   ++ G   +W+CP + E +  +  +   RF +L E F 
Sbjct: 483 LPVRTSLHAMASLGDVLDGIGRAIARGALVFWVCPLVTESEAMDLAAAEARFAALTERFG 542

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + + HG+     +E+ +  F  G  K+L+ATTVIEVG+D+  A+I++IE+AE FGLAQ
Sbjct: 543 PIVGLAHGQQDIAVREAAIADFAAGRTKILVATTVIEVGVDIPAATIMVIEHAERFGLAQ 602

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG + S C+LL+   L   +  RL++L++TEDGFLIA+ED + R  G++ G
Sbjct: 603 LHQLRGRVGRGRDESFCLLLHDDALGSTARRRLALLRDTEDGFLIADEDFRLRGGGDVTG 662

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
            +QSG+P   +A     D LL IA +DA+ +   +   +  R  +I  LL L+  ++A +
Sbjct: 663 RRQSGLPDLRLATGARLDLLLTIAAQDAQRV--AEGGASESRRNAIAQLLELFDRHDAAR 720

Query: 696 FIRAG 700
            +R+G
Sbjct: 721 ILRSG 725


>gi|262377324|ref|ZP_06070548.1| ATP-dependent DNA helicase RecG [Acinetobacter lwoffii SH145]
 gi|262307777|gb|EEY88916.1| ATP-dependent DNA helicase RecG [Acinetobacter lwoffii SH145]
          Length = 681

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 263/675 (38%), Positives = 403/675 (59%), Gaps = 25/675 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
            A +   +GVG   +  L K+ N  N +     DLLF+ P  + DR     ++++S  R 
Sbjct: 1   MAAVHQLQGVGNAAASLLEKL-NIFNTD-----DLLFHLPRDYEDRSTIIPMNQLSVGRS 54

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
             + G I +   F   KR+   +LL+D  G++TL F++    +       G ++ + G++
Sbjct: 55  YLLEG-IVKGVDFPPGKRKSMAVLLDDDFGKVTLRFYHIYKGITDRCKL-GNRLRIFGEV 112

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIE--AVYSLPTGLSVDLFKKIIVEALSRLPV-LP 186
           +     + M HP      ++D   P  +  A+Y    GL+    +  I +AL++    LP
Sbjct: 113 RVGARGLEMYHPELQV-ITEDTPLPQTQLTAIYPATEGLTQPKIRDYIQQALAQYSDHLP 171

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +        +  ++ +A   IH+P    +     + + PA++RL ++EL+A QI+LL 
Sbjct: 172 ELLPAKF---SNGYALKQALEYIHHPPVNANMLQLAQGSHPAQQRLIFEELVAHQISLL- 227

Query: 243 MRKQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            R+ F +++  P     K  A+++L ++ F  T +Q+   ++I+QD+     MLR++QGD
Sbjct: 228 TRRAFIQQVEAPSFAPSKTYAKQLLASLAFEMTGAQKRVSREIVQDLKSNKPMLRLVQGD 287

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A   A+E G Q  +MAP  ILA+QHY   K++ +   + V  ++G    
Sbjct: 288 VGAGKTLVAGVAACHALEEGWQVALMAPTEILAEQHYLNFKRWFEPLGLNVAWLSGKQKG 347

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--- 418
             R  A + I  G AH++IGTHALFQ+++++ KL LVI+DEQHRFGV QRL L  K    
Sbjct: 348 KARAAAEQVIRDGSAHLVIGTHALFQENVEFAKLGLVIIDEQHRFGVDQRLALRNKGLDG 407

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            +PH L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+   
Sbjct: 408 MSPHQLVMTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVLQRIASN 467

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EGK+AYW+C  +E+ +  + ++    F  + E F + +I ++HG+M   +K++VM  F
Sbjct: 468 CAEGKQAYWVCTLVEQSETLDAQAAEATFAEIRERFPALNIGLVHGKMKADEKQAVMQQF 527

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN   +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG + S C LLY 
Sbjct: 528 KNNELQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCALLYK 587

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS+N   RL +++ T DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL 
Sbjct: 588 HPLSQNCQERLRIMRETNDGFMIAEKDLELRGPGELLGTKQTGDMNFRVAKLERDDHLLN 647

Query: 658 IARKDAKHILTQDPD 672
            A   A+ +L   PD
Sbjct: 648 QAHYVAQQMLKDYPD 662


>gi|315127929|ref|YP_004069932.1| ATP-dependent DNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315016442|gb|ADT69780.1| ATP-dependent DNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 673

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 262/650 (40%), Positives = 379/650 (58%), Gaps = 24/650 (3%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           T   D+LF+ P  + DR     ISE++    VT+   I + S     KRR     +NDGT
Sbjct: 11  TTVQDMLFHLPLRYEDRTRIYAISELTAHSHVTVQATI-ETSQITFGKRRMLVCQINDGT 69

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLI 156
           G +TL FF   T   KN F  G+ I   G+I++ +    M HP Y   ++  Q      +
Sbjct: 70  GRLTLRFF-NFTAAQKNAFSAGKIIRCFGEIRRGRVGFEMSHPEYSISDTFEQQPTSSTL 128

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPS---IAEAFNIIHN 211
             VYS   GL     K++ + ALS   + +L ++  ++LL ++  PS   +++A  ++H 
Sbjct: 129 TPVYSTTEGL-----KQLSIRALSEQAIELLQKYAVEELLPQQWQPSQLPLSDALLLLHR 183

Query: 212 PRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           P    D     + T PA++RL ++ELLA  ++LL +R+Q ++   I +     +  + L 
Sbjct: 184 PPNDVDIIALEQGTHPAQQRLVFEELLAQNLSLLKVREQGQQVKAIALEPTNPLEAQFLA 243

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +PF+PT +Q   + +I  DM     M+R++QGDVGSGKTLVA ++   A+  G Q  +M
Sbjct: 244 QLPFAPTNAQSRVVSEIKTDMQHAYPMMRLVQGDVGSGKTLVAALSALTAIAQGYQVALM 303

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  IL++QH      + +N  I V  + G      R   L  IA G+A +I+GTHALFQ
Sbjct: 304 APTEILSEQHGINFSSWFENLGISVAWLGGKTKGKERVNTLAMIASGEAQMIVGTHALFQ 363

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDI 443
           D +++  L+L+I+DEQHRFGV QRL L +K       PH L+MTATPIPRTL +T+  D+
Sbjct: 364 DEVKFNNLVLIIIDEQHRFGVHQRLSLREKGRFGDCYPHQLVMTATPIPRTLAMTAYADL 423

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE-GKKAYWICPQIEEKKESNFRS 502
           + S I E P GR PI TV IP  R D++I R+K+  +E G++ YW+C  I+E +    ++
Sbjct: 424 ETSVIDELPPGRTPITTVAIPDTRRDDIISRVKLACNEQGRQVYWVCTLIDESEVLQCQA 483

Query: 503 VVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             +    L E     +I ++HGRM   +K+++M  FK G   +L+ATTVIEVG+DV +AS
Sbjct: 484 AEDSALQLKEALPELNIGLVHGRMKATEKQAIMSEFKTGNIHVLVATTVIEVGVDVPNAS 543

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
           +IIIEN E  GLAQLHQLRGRVGRG   S C+LLYH PLS  +  RL VL+++ DGF+IA
Sbjct: 544 LIIIENPERLGLAQLHQLRGRVGRGATASHCVLLYHAPLSHTAQKRLGVLRDSNDGFVIA 603

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           E DL+ R  GE+LG KQ+G+ +F IA        L   R  A+ +L Q P
Sbjct: 604 ERDLEIRGPGEVLGTKQTGLAEFKIADLTRDKQTLNQVRPIAQQMLKQYP 653


>gi|77461780|ref|YP_351287.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens Pf0-1]
 gi|77385783|gb|ABA77296.1| ATP-dependent DNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 691

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 270/697 (38%), Positives = 399/697 (57%), Gaps = 32/697 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+K+   G  N     D+LF+ P  + DR     I  +   +   +
Sbjct: 9   VTALKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGALRPGQDAVV 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + +RR   + L DGTG ++L  FY  +   K     G +I   G+ +  
Sbjct: 63  EGTVS-GADVVMGRRRSLVVRLQDGTGGLSL-RFYHFSNAQKEGLKRGTRIRCYGEARPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
            + + + HP Y   N  D   P+ E    VY L  GL+    +++ ++ L+ L    LP+
Sbjct: 121 ASGLEIYHPEYRAING-DEPPPVDETLTPVYPLTEGLTQARLRQLCMQTLTLLKPATLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240
           W+  +L +      +A+A   +HNP    D +       W   A+ RLA++ELL  Q++ 
Sbjct: 180 WLPTELARDYQLAPLADAIRYLHNPPADADVDELALGHHW---AQHRLAFEELLTHQLSQ 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R+  +      +    K+  K L N+ F+PT +Q+    +I  D+SQ   MLR++QG
Sbjct: 237 QRLRESMRSLRAPAMPKATKLPAKYLANLGFNPTGAQQRVGNEIAYDLSQHEPMLRLIQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG+GKT+VA +A   A+EAG Q  +MAP  ILA+QH+   K++ +   I V  + G + 
Sbjct: 297 DVGAGKTVVAALAALQALEAGYQVALMAPTEILAEQHFITFKRWLEPLGIDVAWLAGKLK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
             +R  ALE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L QK   
Sbjct: 357 GKNRVAALEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRQKGVG 415

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++   R  EVIER++
Sbjct: 416 GRMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERVR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE +E   ++    F  L        + +IHGRM   +K +VM 
Sbjct: 476 SACAEGRQAYWVCTLIEESEELTCQAAETTFEDLTAALGELKVGLIHGRMKPAEKAAVMA 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  +S C+LL
Sbjct: 536 EFKAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       L
Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           L   R  A+ +L + P  T V     R L +  QY +
Sbjct: 656 LPAVRDAAQALLERWP--THVSPLLDRWLRHGQQYGQ 690


>gi|50086230|ref|YP_047740.1| ATP-dependent DNA helicase RecG [Acinetobacter sp. ADP1]
 gi|49532206|emb|CAG69918.1| ATP-dependent DNA helicase [Acinetobacter sp. ADP1]
          Length = 686

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 265/663 (39%), Positives = 393/663 (59%), Gaps = 23/663 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R   + G 
Sbjct: 12  LQGVGTAAASLLEKL------NIFTTDDLLFHLPRDYEDRSTVIAMNQLMVGRSYLLEGE 65

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           I +   F   KR+    LL D  G++TL F Y   + L +    G+++ V G+++     
Sbjct: 66  I-KSLDFPAGKRKSVAALLQDDCGKVTLRF-YHIYKGLTDKLKSGQRLRVFGEVRVGARG 123

Query: 136 IIMVHPH-YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDL 193
           + M HP   + H+   +    + A+Y    GL+    ++ I +AL +    LPE + K  
Sbjct: 124 LEMYHPEIQVIHDYTPLPKTQLTAIYPSTEGLTQPKLREYIKQALKQYSDNLPELLPK-- 181

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKK 249
            Q  +   + EA + IH P    + +     + PA++RL ++EL+A QI+LL  R+ + +
Sbjct: 182 -QFTNGYVLKEALHYIHEPPLNANMQQLALGSHPAQQRLIFEELVAHQISLL-TRRAYIR 239

Query: 250 EIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +I  P       +A+ +L  +PF  T +Q+   K+I  D+ Q   MLR++QGDVG+GKTL
Sbjct: 240 QIASPKFEPSQTLAKALLAQLPFQMTSAQKRVSKEIAHDLHQSQPMLRLVQGDVGAGKTL 299

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA   A+EAG Q  +MAP  ILA+QHY   K++ +   I V  ++G      R +A 
Sbjct: 300 VAAIAACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLSIQVGWLSGKQKGKARTQAE 359

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLL 425
           E I  GQ  +++GTHALFQD++++ KL LVI+DEQHRFGV QRL L  K      PH L+
Sbjct: 360 ELIRTGQVQLVMGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGVDHFTPHQLV 419

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EVI R+     EGK+A
Sbjct: 420 MTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVINRIASNCLEGKQA 479

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           YW+C  +E+ +  + ++    +  +   F    + ++HG+M   +K++VM +FK+   +L
Sbjct: 480 YWVCTLVEQSETLDAQAAEATYQEIRSRFPELKVGLVHGKMKAEEKQNVMQAFKDNQLQL 539

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG + S C+LLY  PLS+N 
Sbjct: 540 LIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKHPLSQNG 599

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A   A+
Sbjct: 600 QERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMNFRVAKLERDDHLLVQAHYVAE 659

Query: 665 HIL 667
            +L
Sbjct: 660 QVL 662


>gi|87121086|ref|ZP_01076977.1| ATP-dependent DNA helicase RecG [Marinomonas sp. MED121]
 gi|86163578|gb|EAQ64852.1| ATP-dependent DNA helicase RecG [Marinomonas sp. MED121]
          Length = 691

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/645 (37%), Positives = 374/645 (57%), Gaps = 14/645 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+F+ P  + DR     I ++     + + G +      Q+ KRR     + D +G + 
Sbjct: 33  DLIFHLPIRYQDRTRVLPIGQLKFGDEIVVEGKVIS-CEVQMGKRRSLVCRIRDDSGSLC 91

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYS 161
           L FF+      K  F  G+ I   G++++    + M HP Y +  +        +  +Y 
Sbjct: 92  LRFFHFNASQ-KKQFESGKAIRCFGEVRRGSTGLEMFHPEYQLVSDDWQAGDDRLTPIYP 150

Query: 162 LPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           L  G++ +  + +  +AL  L    L EW+ + + Q+   P++ +A   +H P    + E
Sbjct: 151 LTEGITQNKIRLLCEQALEHLSPYNLQEWLPETVRQEFQLPALYDAVKYLHQPPTDANIE 210

Query: 220 ----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
                + P + RL+++ELLA Q++L+  + + K+++ I +N  G++  K+L+N+PFSPT 
Sbjct: 211 ELKSGSHPTQYRLSFEELLAHQLSLIGKKFKAKEDLSISLNEPGEVLTKLLKNLPFSPTN 270

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q   + +IL+D+ + + MLR++QGDVGSGKTLVA +  +  V    Q  +MAP  ILA+
Sbjct: 271 AQNRVVGEILEDLKKGHPMLRLIQGDVGSGKTLVAAMTASVFVAQNLQVAVMAPTEILAE 330

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QH     ++ +   I V  + G +    R + L +IA G A I++GTHALFQDS++++ L
Sbjct: 331 QHLINFSQWFEPLGIEVAWMVGKLKGKQREQELAKIASGDAKIVVGTHALFQDSVEFHNL 390

Query: 396 ILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
            L I+DEQHRFGV QR+ L +K       PH L+MTATPIPRTL +++  D+D S I E 
Sbjct: 391 SLAIIDEQHRFGVHQRMALREKGMNGQLQPHQLIMTATPIPRTLAMSAYADLDCSIIDEL 450

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P GR P+ T+++   R DEVI R++    EG++AYW+C  IEE      ++  +    L 
Sbjct: 451 PPGRTPVTTIVVSDQRRDEVISRVQAACQEGQQAYWVCTLIEESDALQCQAAEDTATMLS 510

Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           E     +I ++HGR+   +K  +M  FK G  +LL+ATTVIEVG+DV +AS+++IEN E 
Sbjct: 511 EQLQGLAIGLVHGRLKAQEKADIMARFKAGELQLLVATTVIEVGVDVPNASLMVIENPER 570

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
            GLAQLHQLRGRVGRG   S C+LLY  PL +    RLS ++ T DGF IAE+DL+ R  
Sbjct: 571 LGLAQLHQLRGRVGRGSAASHCVLLYKTPLGQQGKARLSTMRETSDGFKIAEKDLELRGP 630

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           GE+LG +Q+G+ +F +A  +    LL+  +  A+ +    P+  S
Sbjct: 631 GELLGARQTGLMEFKVADLQRDKGLLDQVQATAQRLYHHHPEAIS 675


>gi|332975893|gb|EGK12770.1| DNA helicase RecG [Psychrobacter sp. 1501(2011)]
          Length = 748

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 261/712 (36%), Positives = 394/712 (55%), Gaps = 64/712 (8%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+    GVG K    L ++         R  DLL + P  + DR     I+E+ + +   
Sbjct: 25  PVHVLAGVGSKIEGQLEQL------GIKRLFDLLLHLPRDYEDRSRLVNINELQDGQSAL 78

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G ++    +   KR    +++ D TG + L FF     +++ +   G ++ + G++K 
Sbjct: 79  IEGEVT----YVDNKRSGMTVVIEDATGALQLRFFKVYAGLVQTMTL-GTRLRLFGEVKI 133

Query: 132 LKNRIIMVHPHY--------IFHNSQDVNFPLIEAVY----------SLPT----GLSVD 169
            +  I M HP Y        + +      +P ++ ++          +L T    GL + 
Sbjct: 134 SRYGIQMAHPEYSIVSPGAPVINTGLQPIYPTVKGLHQNKLRTLLKLALQTVHQQGLPLS 193

Query: 170 LFKKIIVEALSRLPV-LPE--------------WIEKDLLQKKSFPSIA--EAFNIIHNP 212
           +F     EA++ LP  LP+                     Q  S+ ++   EA  +IH P
Sbjct: 194 VFNSADWEAVNHLPAPLPKNSYGLPLPSAPVTPANPSSSSQAPSWQTLTLFEALTLIHTP 253

Query: 213 RKAKDFEWTS-----------PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI 261
               D    +           PA +RL  +EL A Q+++L  RKQ  +      +    +
Sbjct: 254 PMHTDIGLQAAQLTQLKDRIHPACQRLIVEELTAHQLSMLYRRKQLHQHKAPKCDKHSSL 313

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           A ++L N+PFS TK+Q+  I +I  DM+    MLR++QGDVG+GKTLVA +A   A+++G
Sbjct: 314 ADRLLANLPFSLTKAQDRVINEITSDMATSVPMLRLVQGDVGAGKTLVAALAACYALDSG 373

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  +MAP  ILA+QH    K + +   I V  + G      RR+AL+ +A  +  +++G
Sbjct: 374 WQVAVMAPTEILAEQHLINFKSWFEPLGIGVGWLAGKQTAKQRREALKAVAENEVQVVVG 433

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLT 438
           THALFQD++ + KL L I+DEQHRFGV+QR+ LT K  A   PH L+MTATPIPRTL ++
Sbjct: 434 THALFQDAVVFAKLGLAIIDEQHRFGVEQRMALTDKGVADSTPHQLIMTATPIPRTLAMS 493

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           + GD+D S I E P GR PI TV I   R DEVIER+ +   EGK+AYW+CP +++    
Sbjct: 494 AYGDMDTSIIDELPPGRTPITTVTIDRARRDEVIERIAINCKEGKQAYWVCPLVDDSNTL 553

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           N ++    +  L E     I ++HG+M   +K++VM +FKNG   LL+ATTVIEVG+DV 
Sbjct: 554 NAQAAEATYADLSERLDIRIGMVHGKMKGAEKQAVMAAFKNGELDLLVATTVIEVGVDVP 613

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +AS+++IENAE  GL+QLHQLRGRVGRG   S C+LLY  PLS+    RL+VL+++ DGF
Sbjct: 614 NASLMVIENAERLGLSQLHQLRGRVGRGSTKSFCVLLYQTPLSETGIERLNVLRDSNDGF 673

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           +IA++DL+ R  GE+LG +Q+G   + ++     ++LL IA   AK ++  D
Sbjct: 674 VIAQKDLQLRGPGELLGKRQTGNVGYYVSDLSRDENLLMIASHLAKRLINDD 725


>gi|70733354|ref|YP_263129.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens Pf-5]
 gi|68347653|gb|AAY95259.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens Pf-5]
          Length = 691

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 264/681 (38%), Positives = 396/681 (58%), Gaps = 30/681 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG+  +  L+K+   G  N     D+LF+ P  + DR     I  +   +   
Sbjct: 8   PVTALKGVGESMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +S  +   + KRR   + L DGTG ++L  FY  +   K+    G ++   G+ + 
Sbjct: 62  IEGTVS-GADVVMGKRRSLLVRLQDGTGGLSL-RFYHFSNAQKDGLKRGTRVRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
             + + + HP Y    S D   P+   +  +Y L  GL+    + +  ++L+ L    LP
Sbjct: 120 GASGLEIYHPEY-RAISGDEPPPVDQTLTPIYPLTEGLTQQRLRLLCQQSLALLGPRSLP 178

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIA 239
           +W+ ++L +      + +A   +H+P    D +       W   A+ RLA++ELL  Q++
Sbjct: 179 DWLPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLS 235

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
              +R   + +    + +  K+  K L+N+ F+PT +Q+    +I  D+SQ   MLR++Q
Sbjct: 236 QQRLRDSLRSQRAPVLPLARKLPVKYLKNLGFAPTGAQQRVGNEIAYDLSQPEPMLRLIQ 295

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VA +A   A+EAG Q  +MAP  ILA+QH+   K++ +   + V  + G +
Sbjct: 296 GDVGAGKTVVAALAALQALEAGYQVALMAPTEILAEQHFITFKRWLEPLGLEVAWLAGKL 355

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R  ALE+IA G A +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L QK  
Sbjct: 356 KGKARSAALEQIAGG-APMVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRQKGV 414

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EVIER+
Sbjct: 415 GGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDSRRIEVIERV 474

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           +   +EG++AYW+C  IEE +E   ++    F  L        + +IHGRM   +K +VM
Sbjct: 475 RAACAEGRQAYWVCTLIEESEELTCQAAETTFEDLSSALGELRVGLIHGRMKAPEKAAVM 534

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L
Sbjct: 535 AEFKAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVL 594

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LYHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       
Sbjct: 595 LYHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDAD 654

Query: 655 LLEIARKDAKHILTQDPDLTS 675
           LL   R  A+ +L + PD  S
Sbjct: 655 LLPAVRDAAQALLERWPDHVS 675


>gi|56461474|ref|YP_156755.1| DNA helicase RecJ [Idiomarina loihiensis L2TR]
 gi|56180484|gb|AAV83206.1| DNA helicase RecJ [Idiomarina loihiensis L2TR]
          Length = 693

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 263/676 (38%), Positives = 404/676 (59%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+  +GVG+K ++ L K+   G A+ +   D L + P  + DR    ++++++  R   
Sbjct: 10  PLTVLKGVGEKVAVKLRKL---GLASVS---DALLHLPLRYEDR---TQVTDVANLRAGV 60

Query: 72  ITGYIS--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            T  +   +H+  +  ++R      +D TG I+L FF      LK  F +G ++   G++
Sbjct: 61  ATNVLVTVRHADIKYGRKRMLICQASDETGSISLRFFQFSAAQLKQ-FAQGTQLLAFGEV 119

Query: 130 KKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
           ++      MVHP Y +    + +N    +  VY +  G++  + +KII +AL+ L    L
Sbjct: 120 RRGMTGWEMVHPEYRMVKAGEPLNMQETLTPVYPMTEGVTQGILRKIIEQALTYLQPGSL 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241
           PE + ++L  +    S+ +A   +H P          +   PA++RLA +EL+A Q++LL
Sbjct: 180 PELLPENL--RPHQLSLEQAILTLHRPPVDVPLALLEQGEHPAQQRLASEELIAHQLSLL 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R+  + + G  I   G + +  L+ +PFSPT +Q   +K+I  DM+Q   M+R++QGD
Sbjct: 238 QLRQARQAQAGFTIKGNGALQEAFLKQLPFSPTGAQTRVVKEITSDMAQGQPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA ++  AA+EAG Q  +MAP  +L++QH     ++     I V  ++G    
Sbjct: 298 VGSGKTLVAALSALAAIEAGYQVALMAPTELLSEQHAITFSQWLMPLGINVAWLSGKSKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             RR+ L ++  G  H+++GTHALFQ  ++Y +L LVI+DEQHRFGV QRL+L +K    
Sbjct: 358 KSRRELLAQLKQGDIHLLVGTHALFQADVEYRRLALVIIDEQHRFGVHQRLQLREKGVQA 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+  S I E P GR P+ TV IP  R ++++ER++ 
Sbjct: 418 GVHPHQLIMTATPIPRTLAMTAYADLATSVIDELPPGRTPVTTVAIPDTRREQIVERVRE 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
           V  +EG++AYW+C  IEE      ++  +  N L E     SI ++HGR+    KE VM 
Sbjct: 478 VCATEGRQAYWVCTLIEESDVLECQAAEDTANDLQEQLPGLSIGLVHGRLKHEQKEQVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKAGDIDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YH PLS+ +  RL VL+ + DGF+IA+ DL+ R  GE+LG +Q+G+ +  +A  E  ++L
Sbjct: 598 YHSPLSQTAQQRLGVLRESNDGFVIAQRDLEIRGPGELLGHRQTGLAELKVADLERDEAL 657

Query: 656 LEIARKDAKHILTQDP 671
           +  A+  A+H+L   P
Sbjct: 658 IPEAQNIAQHVLEHYP 673


>gi|85711928|ref|ZP_01042983.1| DNA helicase RecJ [Idiomarina baltica OS145]
 gi|85694325|gb|EAQ32268.1| DNA helicase RecJ [Idiomarina baltica OS145]
          Length = 691

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 263/678 (38%), Positives = 408/678 (60%), Gaps = 30/678 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T +GVG K +  L K+      N     D +F+ P+ + DR    ++  I+  R   
Sbjct: 8   PLTTLKGVGDKVAKKLEKL-GLVTVN-----DAIFHLPARYEDR---TQVYRIAYAR-PG 57

Query: 72  ITGYIS---QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           + G+      ++  +  ++R     + D TG +TL FF      LK  F  G  + V G+
Sbjct: 58  VAGHFQVTVDNADIKYGRKRMLVCRVRDETGTMTLRFFQFSAAQLKQ-FSAGTSLLVFGE 116

Query: 129 IKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP--V 184
           ++   + + ++HP Y +  +S  +  P  +  +Y    G+     +KII +ALS +    
Sbjct: 117 VRAGLSGLEVIHPEYRVLSSSDAIELPDTLTPIYPTTEGVYQASLRKIIDQALSYVTERA 176

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIAL 240
           LPE + + L Q     S+ EA   +HNP K    A+  + + PA++RLA +EL+A Q++L
Sbjct: 177 LPELLPEPL-QPHDL-SLVEALKTLHNPPKDVGLAQLEQGSHPAQQRLAMEELIAHQVSL 234

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +R++ ++E    +N +  +  + L+ +PF PT +Q+  + +I  D++++  M+R++QG
Sbjct: 235 LQLREKRQQERAHALNADPHLQSEFLKQLPFKPTAAQQRVLSEIHADLAREQPMMRLVQG 294

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA +A  AA+E G Q  IMAP  IL++QH    +++     I V  ++G   
Sbjct: 295 DVGSGKTLVAALAALAAIEQGHQVAIMAPTEILSEQHALTFEQWFAPLGIEVAWLSGRSK 354

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT- 419
              R++ LE++A G+  +I+GTHALFQ  + Y+ L LVI+DEQHRFGV QRL+L +K   
Sbjct: 355 GKARQRTLEQLASGRVQLIVGTHALFQADVHYHSLALVIIDEQHRFGVHQRLQLREKGVQ 414

Query: 420 ---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D+  S I E P GR PI TV+IP  R D+VIER++
Sbjct: 415 AGFQPHQLIMTATPIPRTLAMTAYADLATSVIDELPPGRTPITTVVIPDTRRDQVIERVR 474

Query: 477 VVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
            V + EG++AYW+C  IEE +    ++  +    L E     ++ ++HGRM    KE+VM
Sbjct: 475 EVCTHEGRQAYWVCTLIEESEVLECQAAEDTATELQEQLDGLTVGLVHGRMKADQKEAVM 534

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+L
Sbjct: 535 SRFKSGEIDLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVL 594

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PLS+ +  RLSVL+++ DGF+IA+ D++ R  GE+LG +Q+G+ +  +A  E  + 
Sbjct: 595 LYKTPLSRTATERLSVLRDSNDGFVIAQRDMEIRGYGELLGQRQTGLTQMKVADIERDEV 654

Query: 655 LLEIARKDAKHILTQDPD 672
           L+  A+  A+ ++ + P+
Sbjct: 655 LIPEAQTVAEELIRKYPN 672


>gi|91774408|ref|YP_544164.1| ATP-dependent DNA helicase RecG [Methylobacillus flagellatus KT]
 gi|91708395|gb|ABE48323.1| ATP-dependent DNA helicase RecG [Methylobacillus flagellatus KT]
          Length = 686

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 263/680 (38%), Positives = 390/680 (57%), Gaps = 35/680 (5%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           P  + L   +G+       L+K+  C       +  LL + P  ++D      I ++   
Sbjct: 6   PANSKLDGIKGMTPALQGRLAKLGICN------WQGLLLHMPLRYLDETRITAIRDLHTG 59

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
               + G I  H+  Q + R+     L D TG++ L F +     +     EGR I   G
Sbjct: 60  EQAQVQGEIV-HTEVQYRPRKALVCRLRDDTGQLVLRFLHFYPSQVAT-LKEGRYIRAFG 117

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV---YSLPTGLSVDLFKKIIVEALSRLPV 184
           +++       MVHP        + + P+ EA+   Y    GLS  + +K I  AL  + +
Sbjct: 118 EVRGGFFGWEMVHPQC---RQVEAHAPVAEALTPFYPTTAGLSQAVLRKWISWALEHVDI 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPR--------KAKDFEWTSPARERLAYDELLAG 236
             E + +++    S PS +E+ +++H+P         +++D     PA  RLA+DELLA 
Sbjct: 175 -AEILPQEIYSGLSLPSFSESLHLLHHPTPDTALRSLESRDH----PAWRRLAFDELLAQ 229

Query: 237 QIALLLMRKQF--KKEIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           Q++   MRK    ++  G P     + +   +LR++PF+ T++Q+    +I +D+ Q   
Sbjct: 230 QLS---MRKHHARRRHQGAPALAPSRTLVTALLRSLPFTLTQAQQRVAVEICRDLEQPYP 286

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA +A   AVE G QA IMAP  ILA+QHY+ ++ +     I V 
Sbjct: 287 MQRLLQGDVGSGKTIVAAMAALQAVENGWQAAIMAPTEILAEQHYQKMQTWLAPLGIRVA 346

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            ++G+  +  RR+ +  + +G A ++IGTHALFQ+ + + +L L IVDEQHRFGVQQRL 
Sbjct: 347 WLSGSQGKKERREMMAAVENGVAQLVIGTHALFQEQVVFQRLGLAIVDEQHRFGVQQRLS 406

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L QK   PH L+M+ATPIPRTL ++   D+D+S I E P GR PI T ++   R DEV+E
Sbjct: 407 LRQKGVQPHQLMMSATPIPRTLSMSYFADLDVSVIDELPPGRTPIVTRLVSDARRDEVLE 466

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           R++    EG++AYW+CP IEE +    ++V E +  L E F    + ++HGRM   +K++
Sbjct: 467 RVQHACMEGRQAYWVCPLIEESEVLQLQTVTETYERLREAFPHLRVGLVHGRMKPAEKQA 526

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM +F  G  +LL+ATTVIEVG+DV +AS+++IE+AE  GLAQLHQLRGRVGRG   SSC
Sbjct: 527 VMAAFSAGVTQLLVATTVIEVGVDVPNASLMVIEHAERMGLAQLHQLRGRVGRGAAKSSC 586

Query: 593 ILLYHP-PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           ILLY    LS+ +  RL ++  + DGF IA+ DL  R  GE +G++QSG+P   IA  E 
Sbjct: 587 ILLYQEGKLSETARARLRIIYESNDGFAIAQADLALRGPGEFMGVRQSGVPMLKIADLER 646

Query: 652 HDSLLEIARKDAKHILTQDP 671
              LLE AR  A  +L + P
Sbjct: 647 DQELLEAARDIAAELLEKSP 666


>gi|104784351|ref|YP_610849.1| ATP-dependent DNA helicase RecG [Pseudomonas entomophila L48]
 gi|95113338|emb|CAK18066.1| ATP-dependent DNA helicase [Pseudomonas entomophila L48]
          Length = 692

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 259/681 (38%), Positives = 389/681 (57%), Gaps = 29/681 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L+K+   G  N     DLLF+ P  + DR     I ++   +   
Sbjct: 8   PVTALKGVGDAMAEKLAKV---GLEN---LQDLLFHLPLRYQDRTRVVPIGQLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ + 
Sbjct: 62  IEGVVS-GADVTMGKRRSLVVRLGDGTGVLSL-RFYHFSNAQKEGLKRGTHLRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
             + + + HP Y   N  +   P+   +  +Y    GL+    + +  ++L +L    LP
Sbjct: 120 GASGLEIYHPEYRALNGSEPAPPVEQTLTPIYPTTEGLTQQRLRLLCQQSLGQLGPRSLP 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIA 239
           +W+  +L +      +++A   +HNP    D +       W   A+ RLA++ELL  Q++
Sbjct: 180 DWLPDELARDYQLAPLSDAIRYLHNPPSDADLDELAEGHHW---AQHRLAFEELLTHQLS 236

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
              +R+  +      +    ++  + L N+ FSPT +Q+    +I  D+SQ   M+R++Q
Sbjct: 237 QQRLRESLRSLRAPVLPKASRLPAQYLANLGFSPTGAQQRVGNEIAYDLSQPEPMMRLVQ 296

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VA +A   A+EAG Q  +MAP  ILA+QHY   K++ +   I V  + G +
Sbjct: 297 GDVGAGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKL 356

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R  ALE+IA G   +++GTHALFQD +Q+  L L I+DEQHRFGVQQRL L +K  
Sbjct: 357 KGKARASALEQIASGTP-MVVGTHALFQDEVQFKHLALAIIDEQHRFGVQQRLALRKKGV 415

Query: 420 ----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER+
Sbjct: 416 MGQLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRFEVVERV 475

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           +   +EG++AYW+C  IEE +E   ++    F  L        + +IHGRM   +K +VM
Sbjct: 476 RAACAEGRQAYWVCTLIEESEELTCQAAESTFEELGSALGELRVGLIHGRMKPAEKAAVM 535

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  +S C+L
Sbjct: 536 AEFKAGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVL 595

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LYHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       
Sbjct: 596 LYHPPLSQIGRERLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDAD 655

Query: 655 LLEIARKDAKHILTQDPDLTS 675
           LL   R  A+ +L + P   S
Sbjct: 656 LLPAVRDAAQALLARWPGHVS 676


>gi|67458770|ref|YP_246394.1| ATP-dependent DNA helicase RecG [Rickettsia felis URRWXCal2]
 gi|67004303|gb|AAY61229.1| ATP-dependent DNA helicase RecG [Rickettsia felis URRWXCal2]
          Length = 707

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 270/681 (39%), Positives = 388/681 (56%), Gaps = 35/681 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LFAP+ TF  + +     L ++      +  R  DLLFY P S+ ++   P ++ + +  
Sbjct: 11  LFAPVKTFINIREDTVSALKRL----GIDNIR--DLLFYLPVSYQNKILSPNLTGVRDGE 64

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+  T  + +  +   +  +P KI  ++ TG + L+FF+R    + N    G    ++GK
Sbjct: 65  IIQ-TEVVIESVNLPKKGNQPLKITASNDTGSLLLVFFHRPPPFIFNKLKVGTSHIISGK 123

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++   + + + HP ++ +         IE +YSL   LS       I++A+       + 
Sbjct: 124 VQFFDHYLQISHPEFVTNPKLAKE---IEPIYSLTYLLSNKQLYSYIIKAMDIFEEKCKG 180

Query: 189 IE----KDLLQK-----KSFPSIAEAFNIIH-----NPRKAKDFEW----TSPARERLAY 230
           +E    KD L +     K   S+  +  + H     NP K     W    T  A+++LA 
Sbjct: 181 LEDKEVKDYLDEVLQSLKMLHSLCHSRPLCHSRVGGNPEKMDPAVWPRDDTVAAKKQLAA 240

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            EL+A QI+LL +R Q   + G        I   IL  + F  T  Q+  I++I  + S 
Sbjct: 241 KELIANQISLLNVRTQIAGKQGNIYPKAAGIQANILNELGFELTSYQKQVIEEIELEQSD 300

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           K  M+R+LQGDVGSGKTLVAL+ M   VEAG QA +MAP  +LA QHYEF  K  +NT I
Sbjct: 301 KVEMMRLLQGDVGSGKTLVALLTMVNTVEAGFQATLMAPTDLLANQHYEFFVKALKNTNI 360

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V ++TG +  A R+  + ++ +G+  I++GTHALFQ+ + + KL  +++DEQHRFGVQQ
Sbjct: 361 RVGLLTGKILGAARKNIMIQLENGEIDILVGTHALFQEKVSFKKLGYIVIDEQHRFGVQQ 420

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           RL L  K   P VL+MTATPIPR+L LT  GD+ ISK+  KP  R PI T  + +N+I+ 
Sbjct: 421 RLNLINKGVNPDVLVMTATPIPRSLALTMFGDMTISKLMGKPKNRLPIATNTMSVNKIEH 480

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGR 524
           +IE +   L  G++ YWICP IE+ ++           V+ RF+S+   +   + IIHG+
Sbjct: 481 IIEAINKKLVAGERVYWICPLIEQGEKEGPEEDGLLMDVMNRFDSIENIYRGYVGIIHGK 540

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M +  K+ +M  FK G  K+L+ATTVIEVGIDV +A++I+IENAE FGLAQLHQLRGRVG
Sbjct: 541 MKNEQKDQIMKQFKEGEIKILVATTVIEVGIDVPEATLIVIENAEQFGLAQLHQLRGRVG 600

Query: 585 RGEEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           RG   S CILLY+P  L K +  R  ++K T DGF IAE+DLK R  GEILG+KQSG  +
Sbjct: 601 RGSLQSYCILLYNPKRLGKVARGRFEIMKQTNDGFYIAEQDLKLRGSGEILGVKQSGEME 660

Query: 644 FLIAQPELHDSLLEIARKDAK 664
           F  A       LL  A K A+
Sbjct: 661 FFFADLAKDYDLLLKAHKFAE 681


>gi|95929154|ref|ZP_01311898.1| ATP-dependent DNA helicase RecG [Desulfuromonas acetoxidans DSM
           684]
 gi|95134652|gb|EAT16307.1| ATP-dependent DNA helicase RecG [Desulfuromonas acetoxidans DSM
           684]
          Length = 704

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 258/687 (37%), Positives = 395/687 (57%), Gaps = 23/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PLS+ RGVG K    L+++            DLL+  P  + DR +   I+++    
Sbjct: 11  LNTPLSSLRGVGPKLCEKLTRL------GLHTVEDLLYTLPHRYEDRRHFSTINQLKPGE 64

Query: 69  IVTITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
                G I       + + R   +++++ D TG++ L +F+ + + +K  +  GR + V 
Sbjct: 65  PGQFRGKILNADEVPIGRGRQKLFEVVVGDDTGQMLLKWFHYRRDWMKKNYTPGRIVQVY 124

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS----RL 182
           G+++    R  ++HP   F+++ D     I  VY L  GLS    +    +A++     +
Sbjct: 125 GEVRFYSGRREILHPEIDFNDATDSASLRILPVYPLTEGLSQKQLRNFCQQAVADYADSV 184

Query: 183 PV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQ 237
           P  LPEW+    ++K+    + +A    H P    DF    +   PAR  L YDE    Q
Sbjct: 185 PTHLPEWV----MKKRDLLPLNQALLHCHCPPVDSDFLCLQQGQDPARRTLVYDEFFYLQ 240

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + L L R+  + E G    +E +  Q + + +PFS T +Q+  + +I QDM   + M R+
Sbjct: 241 LGLTLRRQGVQVEQGRAFTLEHRYTQPLAKALPFSLTAAQKRVLGEIKQDMLAPHPMNRL 300

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VAL+A   AVE G QA ++AP  ILA+QHY     +     +   ++TG
Sbjct: 301 IQGDVGSGKTIVALMAALIAVENGAQAAVLAPTEILAEQHYNQFHHWMTQLGLHCALLTG 360

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           + P++ R+  L+ +AHG+  +++GTHA+ Q  + +  L LVI+DEQHRFGVQQR +L +K
Sbjct: 361 STPKSERQTLLDGLAHGEIKLLVGTHAILQPDVTFADLGLVIIDEQHRFGVQQRHQLRKK 420

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P  L+MTATPIPRTL LT  GD+ +S I E P GR PI T I   ++  ++++ ++ 
Sbjct: 421 GHNPDTLVMTATPIPRTLSLTLYGDLAMSVIDELPPGRTPITTRIARSSQRPQLLDFVRR 480

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMD 535
            L +G + Y++ P +EE + S  ++  E F +L +   S  S  ++HGR+   DKE+VMD
Sbjct: 481 ELDKGHQVYFVYPLVEESERSELKAATEAFEALEKELGSEYSGGLLHGRLHPRDKEAVMD 540

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G    L+ATTVIEVGIDV +AS ++IE+AE FGLAQLHQLRGRVGRG   S C+L+
Sbjct: 541 KFKQGQIHYLVATTVIEVGIDVPNASAMVIEHAERFGLAQLHQLRGRVGRGAAKSYCVLV 600

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
                S +   RL++++++ DGF+IAE DL+ R  GE LG +Q+G+  F +A      SL
Sbjct: 601 PSEQCSHDGQQRLNIMQSSNDGFVIAEADLELRGPGEFLGTRQAGIENFRVANLLRDASL 660

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIR 682
           LE AR+DA  ++ QD  LTS +  ++R
Sbjct: 661 LEQAREDALQLIEQDDFLTSPQYYAVR 687


>gi|71083684|ref|YP_266404.1| ATP-dependent DNA helicase recG [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062797|gb|AAZ21800.1| ATP-dependent DNA helicase recG [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 683

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 262/684 (38%), Positives = 409/684 (59%), Gaps = 24/684 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L A L+   GVGKK    L K             DLL+  P S+ DR    KI ++    
Sbjct: 10  LLADLTKLNGVGKKTMEILKK------KKVNNIFDLLWRLPKSYTDRTLVSKICDLQIGV 63

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I TI   +     F   +  P ++   D TG+I  +FF      ++ +     ++T++GK
Sbjct: 64  IQTIR-IVPLKYQFPRVRNLPNRVNCIDETGKIDCIFFNSHEGYVRKILPLNEEVTISGK 122

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV---YSLPTGLSVDLFKKIIVEALSRLPVL 185
           I   K R  + +P YI   SQD    LIE +   YSL  G++   + KII + L  LP+L
Sbjct: 123 IGNYKGRYQITNPTYI---SQDS--SLIENIDNKYSLTEGITEKTYNKIINQILKNLPIL 177

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PEW +KD+L+  +  S  E+   +H+P+  ++++  S   +RLAYDE+LA  +    +RK
Sbjct: 178 PEWHDKDILKIFNNESWNESIIKLHDPKNIENYK--SDFYKRLAYDEILASFLVNSEIRK 235

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + KK   I  N   K  + I+  + F+ T  Q+ ++ DI +D++ K++M R+LQGDVGSG
Sbjct: 236 KIKKIKKISKNFSEKAHKNIVNKLNFTLTNDQKISLGDINKDLNSKSKMFRLLQGDVGSG 295

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VALI+    + +G Q  +MAP  ILA+QHY   KK      I +E+++     + ++
Sbjct: 296 KTIVALISSLNVINSGFQVALMAPTEILARQHYTLAKKLFP-KDIKIELLSSKSENSEKK 354

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVL 424
           + ++ + + +  ++ GTHA+FQ  I +  L  +I+DEQH+FGV+QR  L+ K      VL
Sbjct: 355 RIIKNLENNEIQMVFGTHAIFQKKIIFANLGYIIIDEQHKFGVRQRKLLSDKGGDNCDVL 414

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           LM+ATPIPRTL ++  GD+D+S I EKP+ RK +KT     ++ID+VI  +K  + EG +
Sbjct: 415 LMSATPIPRTLTMSVYGDMDVSIIKEKPSNRKEVKTYSKLESKIDDVINFVKKEIKEGNQ 474

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +W+CP IEE K+ + +S V ++  L+E F + +A++HG++++ +KE +++ F N    +
Sbjct: 475 IFWVCPLIEESKKLDHQSSVTKYKFLNEIFPNKVALLHGKIANEEKEEILNKFLNKKYSI 534

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TT+IEVGID  +A++IIIENA  FGL+QLHQLRGRVGRG + +SCIL++   LS N+
Sbjct: 535 LVSTTIIEVGIDFPNANVIIIENANKFGLSQLHQLRGRVGRGTKQASCILMFKSNLSVNA 594

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+++LKN+ DGF I+EED+K R  G++LG KQSG+  F +A P  ++ L  +A K  K
Sbjct: 595 KKRINILKNSNDGFEISEEDMKLRGFGDLLGFKQSGIKNFRLADPIQNEDLFLMAEKQIK 654

Query: 665 HILTQDPDLTSVRGQSIRILLYLY 688
            I  ++ D+   +      LL LY
Sbjct: 655 KIELENTDIKKYKA-----LLKLY 673


>gi|262370592|ref|ZP_06063917.1| ATP-dependent DNA helicase RecG [Acinetobacter johnsonii SH046]
 gi|262314392|gb|EEY95434.1| ATP-dependent DNA helicase RecG [Acinetobacter johnsonii SH046]
          Length = 681

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 271/680 (39%), Positives = 399/680 (58%), Gaps = 37/680 (5%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
            A +   +GVG   +  L K+      N     DLLF+ P  + DR     +++++  R 
Sbjct: 1   MAAVHQLQGVGAASAALLEKL------NLFTTDDLLFHLPRDYEDRSTIIPMNQLTVGRS 54

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
             + G I Q   F   KR+   I L D  G++TL F Y   + L +    G ++ + G++
Sbjct: 55  YLLEGTI-QGVDFPPGKRKSMAIGLQDDFGKVTLRF-YHIYKGLTDRAKVGNRLRIFGEV 112

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIE--AVYSLPTGLSVDLFKKIIVEALSR-LPVLP 186
           +     + M HP  I   ++    P  +  A+Y    GL+   F++ I +AL++    LP
Sbjct: 113 RVGARGLEMYHPE-IQLITEHTPLPQTQLTAIYPSTEGLTQPKFREYIKQALAKHSDDLP 171

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +            + +A + IH+P    +     + + PA++RL ++EL+A Q++LL 
Sbjct: 172 ELLPAKFTNGYV---LKQALDYIHHPPVDANMLQLSQGSHPAQQRLIFEELVAHQVSLL- 227

Query: 243 MRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            R+ + ++I  P I+   + A+++L ++PF  T +Q+   K+I+QD+     MLR++QGD
Sbjct: 228 SRRAYIQQIEAPRISASRQFAKQLLSSLPFEMTNAQKRVSKEIVQDLKLNKPMLRLVQGD 287

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A   A+E G Q  +MAP  ILA+QHY   KK+ +   + V  ++G    
Sbjct: 288 VGAGKTLVAGVAACHALEEGWQVALMAPTEILAEQHYLNFKKWFEPLGLSVSWLSGKQKG 347

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-- 419
             R  A + I  G AH+++GTHALFQD++++ KL LVI+DEQHRFGV QRL L  K    
Sbjct: 348 KARATAEQAIVDGTAHLVVGTHALFQDNVRFAKLGLVIIDEQHRFGVDQRLALRNKGAQN 407

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+   
Sbjct: 408 MTPHQLVMTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVLQRIASN 467

Query: 479 LSEGKKAYWICPQIEEKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
             EGK+AYW+C  +EE +       E+ +  + ERF  L      +I ++HG+M   +K+
Sbjct: 468 CLEGKQAYWVCTLVEESETLDAQAAEATYLEIKERFPEL------NIGLVHGKMKADEKQ 521

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           +VM  FK    +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG + S 
Sbjct: 522 AVMQQFKANELQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASF 581

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C LLY  PLS+N   RL V++ T DGFLIAE+DL+ R  GE+LG KQ+G   F +A+ E 
Sbjct: 582 CALLYKSPLSQNGQERLRVMRETNDGFLIAEKDLEIRGPGELLGTKQTGDMGFRVAKLER 641

Query: 652 HDSLLEIARKDAKHILTQDP 671
            D LL  A   A  IL   P
Sbjct: 642 DDHLLNQAHYVAAQILKDYP 661


>gi|282599850|ref|ZP_05972118.2| ATP-dependent DNA helicase RecG [Providencia rustigianii DSM 4541]
 gi|282567381|gb|EFB72916.1| ATP-dependent DNA helicase RecG [Providencia rustigianii DSM 4541]
          Length = 694

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 260/681 (38%), Positives = 392/681 (57%), Gaps = 38/681 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L++  G+G   S  +SKI      N  +  DLL + P  + D     +I ++      TI
Sbjct: 12  LTSLHGIGASQSEKMSKI----GLNTVQ--DLLLHFPLRYEDHTRLYQIKDLLPGTTATI 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
           TG + Q +     ++R    L++DGTG +TL FF     M KN   EGR++T  G+I++ 
Sbjct: 66  TGEVLQ-TKVVFGRKRMMTCLISDGTGNLTLRFFNFSAAM-KNSLAEGRQVTAYGEIRRG 123

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIE---AVYSLPTGLSVDLFKKIIVEALSRLP------ 183
                ++HP Y      D N  L E    VY    G+     +K++ +AL+ L       
Sbjct: 124 NTGPEIIHPEYKVSQDTD-NITLQENLTPVYPTTEGVRQATLRKVMEQALAMLDNGNIQE 182

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAGQ 237
           +LPE + + L+      S+ +A  ++HNP    D E         PA++RL  +ELLA  
Sbjct: 183 LLPEELNRGLI------SLPDAIRLLHNP--PPDVELGELEKGHHPAQKRLVLEELLAHH 234

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +++L +R   ++    P+   GK+    L N+PFSPT +Q   + +I +D+ +   M+R+
Sbjct: 235 LSMLAIRAGNERLYAEPLVPTGKLKSPFLDNLPFSPTNAQNRVVSEIEKDLHRDTPMMRL 294

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKTLVA +A   A+E G Q  +MAP  ILA+QH    K++ +   I V  + G
Sbjct: 295 IQGDVGSGKTLVAALAAICAIENGKQVALMAPTEILAEQHANTFKQWLEPLGIKVGWLAG 354

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL--- 414
                 R++  E IA G+  +++GTHA+FQ+ + ++ L LVI+DEQHRFGV QRL L   
Sbjct: 355 KQKGKARQQQQESIADGEVMMVVGTHAIFQEQVSFHSLGLVIIDEQHRFGVHQRLALREK 414

Query: 415 -TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R ++++E
Sbjct: 415 GEQQGNHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRRNDIVE 474

Query: 474 RLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531
           R++   L EG++AYW+C  IE+ +    ++       L        + ++HGRM   +K+
Sbjct: 475 RVRQACLDEGRQAYWVCTLIEDSEVLEAQAAQVTSEELALALPELKVGLVHGRMKPAEKQ 534

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           S+M +FKN   +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S 
Sbjct: 535 SIMAAFKNNEIQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAIASH 594

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C+LLY  PL+  +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A    
Sbjct: 595 CVLLYKTPLTHTAKQRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLR 654

Query: 652 HDSLLEIARKDAKHILTQDPD 672
              +L   ++ A+HI    P+
Sbjct: 655 DQYMLPEVQRLARHIQQNYPE 675


>gi|254491939|ref|ZP_05105118.1| ATP-dependent DNA helicase RecG [Methylophaga thiooxidans DMS010]
 gi|224463417|gb|EEF79687.1| ATP-dependent DNA helicase RecG [Methylophaga thiooxydans DMS010]
          Length = 695

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 264/678 (38%), Positives = 390/678 (57%), Gaps = 24/678 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P++  +GVG K +  L KI         +  DLLF+ P  + DR     +  +  ++
Sbjct: 7   LSQPVTALKGVGDKVAERLIKI------GVQQVQDLLFHLPLRYQDRTRLMPLGALRLQQ 60

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            V I G I Q S  +  +RR     ++DGTG I L FF+  ++  +    +GR+I   G+
Sbjct: 61  EVLIEGVI-QLSQVKFGRRRSLLCHVSDGTGAIILRFFHF-SKAQQQQLTKGRRIRCFGE 118

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP-- 183
           ++     + MVHP Y    +++   P+   +  VY    GL     +K+I +ALS L   
Sbjct: 119 VRNGPASLEMVHPEYQLL-AEEGAVPVENELTPVYPTTEGLHQLSLRKLIKQALSCLDQE 177

Query: 184 VLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQI 238
            +PE  I+   L + +  S+ +A   +H P          +   PA++RLAY+ELLA Q+
Sbjct: 178 TMPELLIDGARLHQSAEYSLVDALQYVHQPPPDAPVQQLLDRHHPAQKRLAYEELLAQQL 237

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
            +  +R Q +      +  +    Q +L  +PF  T++Q+    +ILQDM++   M R++
Sbjct: 238 TMKKLRAQTQHHTAPVLQAKQDKRQALLDVLPFPLTQAQKRVTHEILQDMAEPRPMQRLV 297

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA +A   AV +G QAV+MAP  +LA+QH+     +     I V    G 
Sbjct: 298 QGDVGSGKTVVAALAAIEAVASGCQAVMMAPTELLAEQHFRTFVNWLSPMNIEVGWCAGK 357

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              + R++ L R+  G+  + +GTHALFQD + +  L LVI+DEQHRFGV QRL L  K 
Sbjct: 358 QTTSERKQMLARLQAGEISVAVGTHALFQDEVVFNNLGLVIIDEQHRFGVHQRLALRDKG 417

Query: 419 ----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               + PH L+MTATPIPRTL +T+  D++IS I E P GR P+ TV++P NR  +VIER
Sbjct: 418 CDIDSMPHQLVMTATPIPRTLAMTAYADLNISVIDEMPPGRTPVTTVVLPDNRRHDVIER 477

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +     + ++ YW+C  IEE +    ++  +   SL +      I ++HGRM   DK++V
Sbjct: 478 VYAACQQQRQVYWVCTLIEESEHLQCQAAEDTATSLQDSLPDLRIGLVHGRMKTKDKDTV 537

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +FK G   +L+ATTVIEVG+DV +AS+++IENAE  GLAQLHQLRGRVGRG+  S C+
Sbjct: 538 MTAFKEGQLDMLVATTVIEVGVDVPNASLMVIENAERLGLAQLHQLRGRVGRGQIESHCV 597

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+YHPPLS+N   RL  L+ T DGF IA+ DL+ R  GE+LG +Q+G+P+F +A      
Sbjct: 598 LMYHPPLSENGQARLKCLRETNDGFKIAQRDLEIRGPGEVLGTRQTGLPQFRVADLIDDQ 657

Query: 654 SLLEIARKDAKHILTQDP 671
            LL +    A  +L + P
Sbjct: 658 DLLSVMDNAANVMLKEAP 675


>gi|51473772|ref|YP_067529.1| ATP-dependent DNA helicase RecG [Rickettsia typhi str. Wilmington]
 gi|51460084|gb|AAU04047.1| ATP-dependent DNA helicase RecG [Rickettsia typhi str. Wilmington]
          Length = 703

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 273/688 (39%), Positives = 389/688 (56%), Gaps = 41/688 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LFAP+  F  + +       ++      N  R  DLLFY P S+ ++   P ++E+    
Sbjct: 10  LFAPVKAFINIREDTVSAFKRL----GINNIR--DLLFYLPVSYQNKILSPNLTEVRGGE 63

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+  T  I    + Q +  +P KI  ++ TG I L+FF++  + + N    G K  ++GK
Sbjct: 64  IIQ-TEIIVNSINLQKKGNQPLKITASNNTGSILLVFFHKPPQFILNKLKVGTKHIISGK 122

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++    ++ ++HP +I +         IE +YS+   LS       I++A+       + 
Sbjct: 123 VQFFNYQLQILHPEFITNPKLS---KAIEPLYSITYSLSNKQLYSYIIKAIEIFEEKCKG 179

Query: 189 IEKD--------LLQK----------KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
           IE          +LQ            +  S +   +I+ NPR A     T  A+++LA 
Sbjct: 180 IEDKEVHEYLDVILQNLKILHVFFSPHNLISWSSTMDIVVNPRYA-----TVAAKKQLAI 234

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            EL+A QI+LL +R Q  ++ G        I   ILR + F  T  Q+  I++I  + S 
Sbjct: 235 KELIANQISLLNVRMQINRKQGNIYPKATSIQDNILRELGFELTYYQKQVIEEIESEQSD 294

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           K  M+R+LQGDVGSGKTLVAL+ M   V  G QA +MAP  +LA QHY+F  K  +NT I
Sbjct: 295 KVEMMRLLQGDVGSGKTLVALLTMVNVVTTGLQATLMAPTDLLANQHYDFFVKALKNTNI 354

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V ++TG +    R+  + ++ +G+  I+IGTHALFQ+ + + KL  +++DEQHRFGVQQ
Sbjct: 355 KVGLLTGKILGKARKNIIIQLVNGKIDILIGTHALFQEKVSFKKLGYIVIDEQHRFGVQQ 414

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           RL L  K   P VL+MTATPIPR+L LT  GD+ ISK+  KP  R  I T  + IN+I  
Sbjct: 415 RLNLINKGVNPDVLIMTATPIPRSLALTMFGDMTISKLMGKPKDRLSIVTKTMSINKIGY 474

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFR------SVVERFNSLHEHFTSSIAIIHGR 524
           +IE +   L  G++ YWICP I ++++   +       V+ RFNS+   +     IIHG+
Sbjct: 475 IIEAINKRLIAGERVYWICPLITQREKEALQEDHLLMDVINRFNSIENVYQGYTGIIHGK 534

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M++  KE +M  FK G  K+L+AT VIEVGIDV +A++I+IENAE FGLAQLHQLRGRVG
Sbjct: 535 MANDQKERIMKQFKEGKIKILVATNVIEVGIDVSEATLIVIENAEQFGLAQLHQLRGRVG 594

Query: 585 RGEEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           R    S CILLY+P  L K +  R  ++K+T DGF IAE+DLK R  GEILGIKQSG   
Sbjct: 595 RCSLQSYCILLYNPKRLGKVAQNRFKIMKHTNDGFYIAEQDLKLRGSGEILGIKQSGEID 654

Query: 644 FLIAQPELHDSLLEIARKDA-KHILTQD 670
           F  A  +    LL  A K A + I T+D
Sbjct: 655 FFFADLKDDYELLIKAHKVAERAICTKD 682


>gi|312963870|ref|ZP_07778341.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens WH6]
 gi|311281905|gb|EFQ60515.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens WH6]
          Length = 691

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 259/680 (38%), Positives = 392/680 (57%), Gaps = 28/680 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG+  +  L+K+   G  N     D+LF+ P  + DR     I ++   +   
Sbjct: 8   PVTALKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGQLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +S  +   + +RR   + L DGTG ++L  FY  +   K     G ++   G+ + 
Sbjct: 62  VEGTVS-GADVVMGRRRSLVVRLQDGTGGLSL-RFYHFSNAQKESLKRGTRVRCYGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y L  GL+    +++ ++ L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPPPVDTTLTPIYPLTEGLTQQRLRQLCLQTLTMLGPQSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240
           W+  +L +      + +A   +HNP    D +       W   A+ RLA++ELL  Q++ 
Sbjct: 180 WLPLELARDYQLAPLDDAIRYLHNPPADADVDELALGHHW---AQHRLAFEELLTHQLSQ 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R+  +      +    ++  + L N+ F+PT +Q+    +I  D+SQ+  MLR++QG
Sbjct: 237 QRLRESMRSLRAPAMPKATRLPAQYLANLGFAPTGAQQRVGNEIAYDLSQQEPMLRLIQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG+GKT+VA +A   A+EAG Q  +MAP  ILA+QH+   K++ +   + V  + G + 
Sbjct: 297 DVGAGKTVVAALAALQALEAGYQVALMAPTEILAEQHFITFKRWLEPLGLEVAWLAGKLK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R  ALE+IA G A +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L QK   
Sbjct: 357 GKTRAAALEQIAGG-APMVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRQKGVG 415

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++   R  EVIER++
Sbjct: 416 GRMNPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERVR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE +E   ++    F  L        + +IHGRM   +K +VM 
Sbjct: 476 GACAEGRQAYWVCTLIEESEELTCQAAETTFEDLTSALGELKVGLIHGRMKPAEKAAVMA 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 536 EFKAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLL 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       L
Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655

Query: 656 LEIARKDAKHILTQDPDLTS 675
           L   R  A+ +L + PD  S
Sbjct: 656 LPAVRDAAQALLERWPDHVS 675


>gi|119472958|ref|ZP_01614814.1| ATP-dependent DNA helicase recG [Alteromonadales bacterium TW-7]
 gi|119444627|gb|EAW25937.1| ATP-dependent DNA helicase recG [Alteromonadales bacterium TW-7]
          Length = 693

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 266/677 (39%), Positives = 391/677 (57%), Gaps = 30/677 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG K +    +++  G  N     D+LF+ P  + DR     I+E+S    V+
Sbjct: 10  PITELKGVGPKMA---ERLLKLGIKN---VQDMLFHLPLRYEDRTRIYSINELSFHSHVS 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I + S     KRR   + +ND TG +TL FF       KN    G+ I   G++++
Sbjct: 64  IEATI-ETSQITFGKRRMLVVQVNDNTGRLTLRFFNFSAAQ-KNALSPGKIIRCFGEVRR 121

Query: 132 LKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
            +    M HP Y   +  S+      +  VY    GL     K++ + ALS   V  L +
Sbjct: 122 GRAGFEMSHPEYSLSDTPSEQPTASTLTPVYPTTDGL-----KQLSIRALSEQAVELLNK 176

Query: 188 WIEKDLLQKKSFPS---IAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240
           +  ++LL  +  PS   +A+A  ++H P    D     + T PA++RL ++ELLA  ++L
Sbjct: 177 YSVEELLPVQWQPSQLALADALLLLHRPPSNIDVNELEQGTHPAQQRLVFEELLAQNLSL 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +RKQ ++   + ++   K+  + L  +PF+PT +Q   + +I  D++    M+R++QG
Sbjct: 237 LKVRKQGQQVKAVSLSSTNKLEPQFLSQLPFAPTSAQNRVVSEIKADLASPYPMMRLVQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA ++   A+  G Q  +MAP  ILA+QH      + +   I V  + G   
Sbjct: 297 DVGSGKTLVAALSALTAIAQGFQVALMAPTEILAEQHGISFTSWFKQLGIDVAWLGGKTK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418
              R   LE+IA G++ +I+GTHALFQD +++  L+L+I+DEQHRFGV QRL L +K   
Sbjct: 357 GKERTATLEKIASGESQMIVGTHALFQDEVKFNNLVLIIIDEQHRFGVHQRLTLREKGQF 416

Query: 419 --TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D+++S I E P GR PI TV +P  R D++I R+K
Sbjct: 417 NGCYPHQLVMTATPIPRTLAMTAYADLEVSIIDELPPGRTPITTVALPDTRRDDIITRVK 476

Query: 477 VVLSEG-KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
              +E  ++ YW+C  I+E +    ++  +    L E     SI ++HGRM   +K+S+M
Sbjct: 477 SACNEQERQVYWVCTLIDESEALQCQAAEDSAVQLKEALPDLSIGLVHGRMKPAEKQSIM 536

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           D FK G   +L+ATTVIEVG+DV +AS+IIIEN E  GLAQLHQLRGRVGRG   S C+L
Sbjct: 537 DDFKKGLIHVLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGNIASHCVL 596

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LYH PLS  +  RL VL+++ DGF+IAE DL+ R  GE+LG KQ+G+ +F IA       
Sbjct: 597 LYHAPLSHTAQKRLGVLRDSNDGFVIAERDLEIRGPGEVLGTKQTGLAEFKIADLTRDKQ 656

Query: 655 LLEIARKDAKHILTQDP 671
            L   R  A+ +L Q P
Sbjct: 657 TLNQVRPIAQQMLNQYP 673


>gi|261250549|ref|ZP_05943124.1| ATP-dependent DNA helicase RecG [Vibrio orientalis CIP 102891]
 gi|260939118|gb|EEX95105.1| ATP-dependent DNA helicase RecG [Vibrio orientalis CIP 102891]
          Length = 692

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 262/676 (38%), Positives = 396/676 (58%), Gaps = 26/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 9   PLTSLTGVGAKVAEKLAKV------GLVTAQDLLFHLPLRYEDRTRVYPIAKLHAGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMSVDTL-FGKRKMLAVKISDGNGTITLRFF-NFTAGMKNNFTEGKTVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + +VHP Y F+ S    D+   L   VY    GL     + +  +AL  L    + 
Sbjct: 121 GGYGLEIVHPDYKFYASNQPADIEQTLT-PVYPTTDGLRQITLRNLTDQALELLDKTAVQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLL 242
           E +   L  +++  ++A+A + IH P    D E       PA+ RL  +ELLA  +++L 
Sbjct: 180 ELLPNGLYDQQT--TLAQALHTIHRPPPNIDLEQFDEGKHPAQIRLIMEELLAQNLSMLS 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R + +++  +P+  +  + Q++L  +PFSPT +Q   +++I QD+ + + M+R++QGDV
Sbjct: 238 VRSKGQQDTALPLTPKDTLKQQLLEQLPFSPTNAQARVVQEIEQDLEKPHPMMRLVQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +   
Sbjct: 298 GSGKTLVAALAALRALEHGYQVALMAPTELLAEQHAINFAHWLEPMGIKVGWLAGKLKGK 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----A 418
            +   L +IA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K     
Sbjct: 358 AKETELAKIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGEKQG 417

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + ++++ER++  
Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERVRNA 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  
Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQD 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 538 FKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLY 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+GM  F IA       L+
Sbjct: 598 HSPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGMADFKIADLVRDQRLI 657

Query: 657 EIARKDAKHILTQDPD 672
              ++ A+HI    PD
Sbjct: 658 PEVQRIARHIHDNYPD 673


>gi|326797348|ref|YP_004315168.1| ATP-dependent DNA helicase RecG [Marinomonas mediterranea MMB-1]
 gi|326548112|gb|ADZ93332.1| ATP-dependent DNA helicase RecG [Marinomonas mediterranea MMB-1]
          Length = 693

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/627 (39%), Positives = 362/627 (57%), Gaps = 15/627 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLF+ P  + DR     I ++       I G +      ++ KRR     + D TG ++
Sbjct: 34  DLLFHLPIRYQDRTTVVPIGQLRFGDEAVIEGKVI-GCEIKMGKRRSLICRVKDMTGTLS 92

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV--NFPLIEAVY 160
           L FF+      K       K+   G+I++      M HP Y      D       +  +Y
Sbjct: 93  LRFFHFSAAQ-KKQLENSEKVRCFGEIRRGSTGFEMYHPEYSSIEEDDTLSGQQQLTPIY 151

Query: 161 SLPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
            L  GL+ +  + +  +AL RL    L EW+   +L + S P++AEA   +H+P K  + 
Sbjct: 152 PLTDGLTQNKIRGLCEQALERLTPFNLQEWLPDAILNQFSLPALAEAIQFLHHPDKGVNL 211

Query: 219 E----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
                   PA+ RL+++ELLA Q++L+  R + K++  I +   G + Q++L  +PFSPT
Sbjct: 212 AQLKAGAHPAQYRLSFEELLAHQLSLIGKRIKAKEDKAIAVTEAGNLTQQLLDQLPFSPT 271

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            +Q     ++L DMS  + MLR++QGDVGSGKTLVA +  AA V+ G Q  IMAP  ILA
Sbjct: 272 GAQSRVFSEVLADMSSGHPMLRLVQGDVGSGKTLVAGMTAAAVVQKGYQVAIMAPTEILA 331

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY   K + +   + +  + G +    R   L +I  G+A I++GTHALFQD++ ++ 
Sbjct: 332 EQHYLNFKNWFEPLDVPIAWMIGKLKGKQRDAELLKIKSGEAKIVVGTHALFQDTVTFHN 391

Query: 395 LILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           L L I+DEQHRFGV QR+ L +K       PH L+MTATPIPRTL +++  D+D S I E
Sbjct: 392 LALAIIDEQHRFGVHQRMALREKGLQAGFQPHQLIMTATPIPRTLAMSAYADLDCSIIDE 451

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P GR PI T+++   R  EVI+R++   +EG++AYW+C  IEE +    ++  +    L
Sbjct: 452 LPPGRTPINTIVVSDQRRPEVIDRVRNACTEGRQAYWVCTLIEESEALQCQAAEDTALLL 511

Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            E  T+  + ++HGR+   +K  +M  FK G   LL+ATTVIEVG+DV ++S+++IEN E
Sbjct: 512 QEQLTNLKVGLVHGRLKAQEKADIMALFKAGEIDLLVATTVIEVGVDVPNSSLMVIENPE 571

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
             GLAQLHQLRGRVGRG   S C+LLY  PL +    RLS ++   DGF IAE+DL+ R 
Sbjct: 572 RLGLAQLHQLRGRVGRGTTASHCVLLYKAPLGQQGKERLSTMREHTDGFKIAEKDLELRG 631

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLL 656
            GE+LG +Q+G+ +F +A  +    LL
Sbjct: 632 PGELLGTRQTGLLEFKVADLQRDKGLL 658


>gi|226946848|ref|YP_002801921.1| ATP-dependent DNA helicase RecG [Azotobacter vinelandii DJ]
 gi|226721775|gb|ACO80946.1| ATP-dependent DNA helicase RecG [Azotobacter vinelandii DJ]
          Length = 691

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 255/678 (37%), Positives = 389/678 (57%), Gaps = 24/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L+++       ET   DLLF+ P  + DR     I  +   +   
Sbjct: 8   PVTALKGVGAALAEKLARV-----GLET-LQDLLFHLPLRYQDRTRITPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G ++  +   + +RR   + L DG+G ++L F++  T   K+    G  +   G+++ 
Sbjct: 62  VEGTVAA-ADVVMGRRRSLLVRLQDGSGSLSLRFYHFSTAQ-KDALKRGTPLRCYGEVRP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
             + + + HP Y   N  +   P+   +  +Y    GL+    + +  +AL+RL    LP
Sbjct: 120 GASGLEIYHPEYRAQNGLE-PAPVEQTLTPIYPTTEGLTQQRLRGLTEQALTRLGPHSLP 178

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLL 242
           +W+  +L +      + EA   +H P    D E  +  R     RLA++ELL  Q++L  
Sbjct: 179 DWLPAELARAHRLGPLDEAIRYLHRPPPDADLEELAEGRHWAQHRLAFEELLTHQLSLQR 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  + +    +    ++ Q  L N+ F+PT +Q     +I  D+S+   MLR++QGDV
Sbjct: 239 LRESLRSQQAPALPPASRLPQLFLANLGFAPTGAQRRVGAEIAHDLSRSEPMLRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+VA +A   A+EAG Q  +MAP  ILA+QHY    ++ +   I +  + G +   
Sbjct: 299 GAGKTVVAALAALQAIEAGYQVALMAPTEILAEQHYLNFARWLEPLGIDLAWLAGKLKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419
            R  ALE+IA G   +++GTHALFQD +++  L L I+DEQHRFGVQQRL L QK     
Sbjct: 359 ARGAALEKIAGG-CPMVVGTHALFQDEVRFRNLALAIIDEQHRFGVQQRLALRQKGIDGR 417

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +++  D+D S + E P GR P+ T++I  +R  EVIER++  
Sbjct: 418 LCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRLEVIERVRAA 477

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             EG++AYW+C  IEE +E   ++    F  L       ++ +IHGRM   +K +VM+ F
Sbjct: 478 CLEGRQAYWVCTLIEESEELTCQAAETTFEELSAALGELAVGLIHGRMKPAEKAAVMEEF 537

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 538 KAGRLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSTASHCVLLYH 597

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS+    RL++++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL 
Sbjct: 598 APLSQLGRERLAIMRETSDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 657

Query: 658 IARKDAKHILTQDPDLTS 675
             R+ A+ +L   P   S
Sbjct: 658 AVREAAQDLLACWPQHVS 675


>gi|292490888|ref|YP_003526327.1| ATP-dependent DNA helicase RecG [Nitrosococcus halophilus Nc4]
 gi|291579483|gb|ADE13940.1| ATP-dependent DNA helicase RecG [Nitrosococcus halophilus Nc4]
          Length = 712

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/657 (38%), Positives = 382/657 (58%), Gaps = 25/657 (3%)

Query: 7   NPLF--APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           NPL    P++  +GVG   +  L+++        ++  DLLF+ P  + DR     I  +
Sbjct: 21  NPLTLSTPVTALKGVGPNLARRLARL------GLSKVQDLLFHLPQRYQDRTQLVPIGAL 74

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
              R   I G I Q S  +  +RR     ++DGTGEI L FF+  T   +N      ++ 
Sbjct: 75  QIGREALIEGEI-QLSEIRQGRRRSLVCAVSDGTGEIFLRFFHFSTWQ-QNSLTPAIRLR 132

Query: 125 VTGKIKKLKNRIIMVHPHY---IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
             G++++   R+ MVHP Y   +   ++ +   L   +Y    GL   L + +I   L  
Sbjct: 133 CFGEVRQGAGRLEMVHPEYRRLLGEEAEAIEVHLT-PIYPTTEGLRQPLLRDLIQGVLKD 191

Query: 182 L--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLA 235
           L    + + +    L+    P++++A   +H P          E   P ++RLA++ELLA
Sbjct: 192 LGEEGIIDHLPPTFLEGIGLPTLSQAIVYLHQPPPDAPLDVLAEGKHPVQQRLAFEELLA 251

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
             ++L  +R +  +     +  EG++ ++ L  + F  T +QE  +++IL+DM++ + M 
Sbjct: 252 HHLSLRQLRLRATQLQAPSLASEGQLQKRFLAALSFPLTAAQERVVQEILEDMARDSPMQ 311

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT+VA +A+  AVEAG QA +MAP  +LA+QH   ++++    +I VE +
Sbjct: 312 RLLQGDVGSGKTVVAALAILQAVEAGHQAALMAPTELLAEQHLRVLQRWFSPFEINVEWL 371

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
                   RR++L R+  G+A + +GTHALFQ+ + ++ L LV+VDEQHRFGV+QRL L 
Sbjct: 372 AAKGAAKGRRESLNRLKSGEAQVAVGTHALFQEGVNFHHLGLVVVDEQHRFGVEQRLALR 431

Query: 416 QK----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           +K    A  PH L+MTATPIPRTL +T+  D+D S I + P GR P+ T  +   R  EV
Sbjct: 432 EKGRHGAYCPHQLIMTATPIPRTLAMTAYADLDTSVIDQLPPGRIPVATAAVSHRRRTEV 491

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
           + +++     G++AYW+C  IEE      ++  +    L E      I +IHGRM   DK
Sbjct: 492 VVKVRRACQAGRQAYWVCTLIEESDSLQAQAAEKTAAELAEVLPELRIGLIHGRMKPPDK 551

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           ES M +FK+G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S
Sbjct: 552 ESTMAAFKSGAIHLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGAADS 611

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
            C+LLYH PLS+ S  RL+ L+ T DGF IA  DL+ R  GE+LG +Q+G+P++ +A
Sbjct: 612 YCVLLYHGPLSELSRARLACLRATNDGFEIARRDLELRGPGEVLGTRQTGLPQYRVA 668


>gi|323494589|ref|ZP_08099693.1| ATP-dependent DNA helicase RecG [Vibrio brasiliensis LMG 20546]
 gi|323311192|gb|EGA64352.1| ATP-dependent DNA helicase RecG [Vibrio brasiliensis LMG 20546]
          Length = 692

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 264/676 (39%), Positives = 396/676 (58%), Gaps = 26/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+      N  +  DLLF+ P  + DR     I ++       
Sbjct: 9   PLTSLTGVGAKVAEKLAKV----GLNSVQ--DLLFHLPLRYEDRTRIYPIVKLHAGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMSVDTL-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFAEGKTVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + +VHP Y F+    S +V   L   VY    GL     + +  +AL  L    + 
Sbjct: 121 GGYGLEIVHPDYKFYAPNQSAEVEQSLT-PVYPTTDGLRQITLRNLTDQALELLDKAAVQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLL 242
           E +   L   ++  ++ +A + IH P  + D +       PA+ RL  +ELLA  +++L 
Sbjct: 180 ELLPSGLYDHQT--TLTQALHTIHRPPPSIDLDQFDQGKHPAQIRLIIEELLAQNLSMLS 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R + +++  +P+ V  K+ Q++L  +PFSPT +Q   +++I QD+ + + M+R++QGDV
Sbjct: 238 VRSKGQQDAALPLPVANKLKQQLLDQLPFSPTNAQSRVVEEIEQDLVKPHPMMRLVQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +   
Sbjct: 298 GSGKTLVAALAALRALEHGYQVALMAPTELLAEQHAINFANWFEPMGIKVGWLAGKLKGK 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            +   L +IA G+A +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL+L +K     
Sbjct: 358 AKEAELTKIASGEAQMVVGTHALFQEHVEFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++  
Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNA 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  
Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQD 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 538 FKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLY 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+GM  F IA       L+
Sbjct: 598 HSPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGMADFKIADLVRDQRLI 657

Query: 657 EIARKDAKHILTQDPD 672
              ++ A+HI    PD
Sbjct: 658 PEVQRIARHIHDNYPD 673


>gi|330447151|ref|ZP_08310801.1| ATP-dependent DNA helicase RecG [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491342|dbj|GAA05298.1| ATP-dependent DNA helicase RecG [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 693

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 264/674 (39%), Positives = 393/674 (58%), Gaps = 24/674 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L    GVG K +  L KI    N       DLLF+ P  + DR     I+     + +T+
Sbjct: 11  LGELSGVGAKMAEKLEKI-GLNNVQ-----DLLFHLPLRYEDRTRIWPINRAMPGQHLTV 64

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +  H+S    KR+   + + DGTG +TL FF     M KN F EG+++   G+IK  
Sbjct: 65  QGEV-HHTSITFGKRKMLAVKIGDGTGSVTLRFFNFNAAM-KNSFAEGKQVKAYGEIKGS 122

Query: 133 KNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188
           K  + ++HP Y IF    +++    +  VY    GL     + +  +AL+ L    + E 
Sbjct: 123 KFGLEIIHPDYRIFSEPTELSVEETLTPVYPTTDGLRQLTLRNLTDQALNLLDKAAVTEL 182

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMR 244
           + + L  ++   ++A+A  ++H P      +       PA+ RL  +ELLA  +++L +R
Sbjct: 183 LPEGLYDRQM--TLAQALRLMHRPTPDISLDQLDAGKHPAQHRLILEELLAQNLSMLALR 240

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            + ++    P+  +  + Q++L ++PFSPT +Q+  + DI  D+++   M+R++QGDVGS
Sbjct: 241 SKGQQHNAWPLAAKDTLKQQLLDSLPFSPTGAQQRVVADIETDLAKAQPMMRLVQGDVGS 300

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA +A   A+E G Q  +MAP  +LA+QH      +     I V  + G +    R
Sbjct: 301 GKTLVAALAALRAIEHGYQVALMAPTELLAEQHAINFANWLNPMGIQVGWLAGKLKGKAR 360

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---- 420
              L RI  G+  +++GTHALFQD +++  L LVI+DEQHRFGV QRL+L +K       
Sbjct: 361 ETELTRITSGEVKMVVGTHALFQDHVKFDNLALVIIDEQHRFGVHQRLELREKGANDGRY 420

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVL 479
           PH L+MTATPIPRTL +T+  D+D S I E P GR PI+TV +P  R  E+IER++   L
Sbjct: 421 PHQLVMTATPIPRTLAMTAYADMDTSIIDELPPGRTPIQTVALPDARRAEIIERIRSACL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  I+E +    ++  +  + L        I ++HGRM   +K++VM SFK
Sbjct: 481 NEGRQAYWVCTLIDESEVLEAQAASDTADELTGLLPDLKIGLVHGRMKAQEKQAVMASFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   LL+ATTVIEVG+DV +AS+++IEN E  GLAQLHQLRGRVGRG+  S C+LLYH 
Sbjct: 541 AGELDLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGKVASHCVLLYHA 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+ +F +A       L+  
Sbjct: 601 PLSKTAQKRLGVLRESSDGFVIAQRDLEIRGPGELLGTKQTGIAEFKVADLIRDQYLIPQ 660

Query: 659 ARKDAKHILTQDPD 672
            +K A++I    PD
Sbjct: 661 VQKLARYIHDNYPD 674


>gi|253997768|ref|YP_003049831.1| ATP-dependent DNA helicase RecG [Methylovorus sp. SIP3-4]
 gi|253984447|gb|ACT49304.1| ATP-dependent DNA helicase RecG [Methylovorus sp. SIP3-4]
          Length = 683

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 264/669 (39%), Positives = 379/669 (56%), Gaps = 36/669 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL + P  ++D      I ++       + G I  H+  Q + R+     L D +G +T
Sbjct: 28  DLLLHLPLRYVDETRVTPIRDLRLGEQAQVEGEII-HAEVQYKPRKALIARLQDASGILT 86

Query: 103 LLF--FY-RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
           L F  FY  +   LK    EG ++   G+++       MVHP              +  V
Sbjct: 87  LRFLNFYPSQIAALK----EGNRLRALGEVRNGFFGYEMVHPQCKPVREGAAVKQTLTPV 142

Query: 160 YSLPTGLSVDLFKKIIVEAL---SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
           Y    GLS    +K I  AL   S   +LP      + Q K++P   ++   +H P    
Sbjct: 143 YPTTAGLSQPSLRKWIGRALETASHDELLP----AKVYQGKAWPDFQQSLLQLHYPPPDA 198

Query: 217 DF----EWTSPARERLAYDELLAGQIALLLMRKQF--KKEIGIP-INVEGKIAQKILRNI 269
           D     E T+PA +RLA+DELLA QI+   MRK +  ++ +G P +    K+   +L+++
Sbjct: 199 DQHALQEKTTPAWQRLAFDELLAQQIS---MRKHYARRRGLGAPAMPPSKKLVSALLKSL 255

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T +Q+    DI  D+ +   M R+LQGDVGSGKT+VA +A   A+E G QA IMAP
Sbjct: 256 PFGLTAAQQRVFTDIQHDLGRSYPMQRLLQGDVGSGKTIVAAMAALQAIEHGWQAAIMAP 315

Query: 330 IGILAQQHYEFIKKYTQN-----TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
             ILA+QH+  +  + QN       + V  + G+  +  R +AL  I+ G+A ++IGTHA
Sbjct: 316 TEILAEQHFNKLNTWLQNLAAGAAPVRVVWVAGSQGKKARAEALAAISSGEAQLVIGTHA 375

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +FQD +Q+ +L LV+VDEQHRFGVQQRL L QK   PH L+M+ATPIPRTL ++   D+D
Sbjct: 376 VFQDQVQFARLGLVVVDEQHRFGVQQRLALRQKGAQPHQLMMSATPIPRTLSMSYFADLD 435

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           +S I E P GR P+ T ++   R +EV ER++   S+G++AYW+CP IEE +    ++ V
Sbjct: 436 VSVIDELPPGRTPVVTKLVSDARREEVFERVRAACSQGRQAYWVCPLIEESEALQLQTAV 495

Query: 505 ERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +   +L E F    + ++HGRM   DK++VM +F      LL+ATTVIEVG+DV +AS++
Sbjct: 496 DTHIALQEAFPELQVGLVHGRMKPADKQAVMQAFAANQIHLLVATTVIEVGVDVPNASLM 555

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +IE+AE  GL+QLHQLRGRVGRG   S+CILLY  PLS+ +  RL ++  + DGF IA+ 
Sbjct: 556 VIEHAERMGLSQLHQLRGRVGRGAASSACILLYQTPLSETARARLKIIYESSDGFEIAQA 615

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           DL  R  GE +GI+QSG P   IA  E    LLE A+  A  +L + P       Q    
Sbjct: 616 DLHLRGPGEFMGIRQSGTPMLKIADLERDAGLLEEAQAMADWLLQKHPQAAEAHLQR--- 672

Query: 684 LLYLYQYNE 692
             +L+Q  E
Sbjct: 673 --WLHQAQE 679


>gi|152989714|ref|YP_001351438.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa PA7]
 gi|150964872|gb|ABR86897.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa PA7]
          Length = 691

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 258/678 (38%), Positives = 387/678 (57%), Gaps = 24/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L+++       ET   D+LF+ P  + DR     I  +       
Sbjct: 8   PVTALKGVGAALAEKLARV-----GLET-LQDILFHLPLRYQDRTRVTAIGALRPGADAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G ++  +   + +RR   + L DG+G ++L  FY  ++  K+    G  +   G+++ 
Sbjct: 62  VEGVVAS-ADVVMGRRRSLLVRLQDGSGTLSL-RFYHFSQAQKDGLKRGTHLRCYGEVRP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
             + + + HP Y   N  D   P+   +  +Y    GL+    +++  +AL+ L    LP
Sbjct: 120 GASGLEIYHPEYRALNG-DEPIPVEQTLTPIYPTTEGLTQQRLRQLSQQALALLGPSSLP 178

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLL 242
           +W+  +L +      + +A   +H P    D E  +  R     RLA++ELL  Q++L  
Sbjct: 179 DWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQR 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  + +    +    ++ Q+ L N+ F PT +Q     +I  D++Q   MLR++QGDV
Sbjct: 239 LREAVRSQAAPRLPPARRLPQQFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+VA +A   A+EAG Q  +MAP  ILA+QH+    K+ Q   I V  + G +   
Sbjct: 299 GAGKTVVAALAALQAIEAGYQVALMAPTEILAEQHFVNFGKWLQPLGIEVAWLAGKLKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419
            R  ALERI  G A +++GTHALFQD +++ +L L I+DEQHRFGVQQRL L QK     
Sbjct: 359 ARAAALERIGDG-APMVVGTHALFQDEVKFKRLALAIIDEQHRFGVQQRLALRQKGVDGR 417

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EVIER++  
Sbjct: 418 LCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAA 477

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   DK  VM++F
Sbjct: 478 CREGRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAF 537

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 538 KEGMLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYH 597

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS+    RL +++ T DGFLIAE+DL+ R  GE+LG +Q+G+ +F +A       LL 
Sbjct: 598 PPLSQIGRERLGIMRETSDGFLIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 657

Query: 658 IARKDAKHILTQDPDLTS 675
             R  A+ +L   P   S
Sbjct: 658 AVRDAAQSLLAHWPQHVS 675


>gi|77361708|ref|YP_341283.1| ATP-dependent DNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76876619|emb|CAI87841.1| ATP-dependent DNA helicase recG [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 673

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/646 (39%), Positives = 379/646 (58%), Gaps = 24/646 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           D+LF+ P  + DR     I+E+S    V++   I + S     KRR     +NDGTG +T
Sbjct: 15  DMLFHLPLRYEDRTRLYTINELSLHSHVSVEATI-ETSQITFGKRRMLVCQINDGTGRLT 73

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVY 160
           L FF   T   KN    G+ I   G++++ +    M HP Y   ++  +      +  VY
Sbjct: 74  LRFF-NFTAAQKNALSAGKIIRCFGEVRRGRVGFEMNHPEYSISDTPNEQPTATTLTPVY 132

Query: 161 SLPTGLSVDLFKKIIVEALS--RLPVLPEWIEKDLLQKKSFPS---IAEAFNIIHNPRKA 215
           S   GL     K++ + ALS   + +L ++  ++LL  +  PS   +++A  ++H P K 
Sbjct: 133 STTEGL-----KQLSIRALSDQAINLLQKYSVEELLPAQWQPSNLGLSDALLLLHRPPKD 187

Query: 216 KDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
            D     + T PA++RL ++ELLA  ++LL +R+Q ++   + +N    +  + L  +PF
Sbjct: 188 IDVIALEQGTHPAQQRLVFEELLAQNLSLLKIRQQGQQVKAVSLNSNNALESQFLAQLPF 247

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
            PT +Q   + +I  D+ Q   M+R++QGDVGSGKTLVA ++   A+  G Q  +MAP  
Sbjct: 248 DPTNAQSRVVAEIKGDLQQPYPMMRLVQGDVGSGKTLVAALSALTAIAQGFQVALMAPTE 307

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           IL++QH      +     I V  + G      R   LE+IA G+A +I+GTHALFQD ++
Sbjct: 308 ILSEQHGINFNNWFNQLGITVAWLGGKTKGRERVATLEKIASGEAQMIVGTHALFQDEVK 367

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           ++ L+L+I+DEQHRFGV QRL L +K       PH L+MTATPIPRTL +T+  D++ S 
Sbjct: 368 FHNLVLIIIDEQHRFGVHQRLSLREKGRFGDCYPHQLVMTATPIPRTLAMTAYADLETSV 427

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE-GKKAYWICPQIEEKKESNFRSVVER 506
           I E P GR PI TV +P  R  ++I+R+K+   E G++ YW+C  I+E +    ++  + 
Sbjct: 428 IDELPPGRTPITTVALPDTRRGDIIKRVKLACHEQGRQVYWVCTLIDESEVLQCQAAEDS 487

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              L E     ++++IHGRM   +K+++M  FK G   +L+ATTVIEVG+DV +AS+III
Sbjct: 488 AQQLKEALPELNVSLIHGRMKATEKQAIMSEFKAGNIHVLVATTVIEVGVDVPNASLIII 547

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           EN E  GLAQLHQLRGRVGRG   S C+LLYH PLS  +  RL VL+++ DGF+IAE DL
Sbjct: 548 ENPERLGLAQLHQLRGRVGRGATASHCVLLYHAPLSHTAQKRLGVLRDSNDGFVIAERDL 607

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           + R  GE+LG KQ+G+ +F IA        L   R  A+ +L Q P
Sbjct: 608 EIRGPGEVLGTKQTGLAEFKIADLTRDKHTLNQVRPIAQQMLIQHP 653


>gi|15600538|ref|NP_254032.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa PAO1]
 gi|107104447|ref|ZP_01368365.1| hypothetical protein PaerPA_01005524 [Pseudomonas aeruginosa PACS2]
 gi|116053492|ref|YP_793819.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894448|ref|YP_002443318.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa LESB58]
 gi|296392205|ref|ZP_06881680.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa PAb1]
 gi|313106773|ref|ZP_07792989.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa 39016]
 gi|9951664|gb|AAG08730.1|AE004946_14 ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa PAO1]
 gi|115588713|gb|ABJ14728.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218774677|emb|CAW30494.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa LESB58]
 gi|310879491|gb|EFQ38085.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa 39016]
          Length = 691

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/678 (37%), Positives = 387/678 (57%), Gaps = 24/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L+++       ET   D+LF+ P  + DR     I  +       
Sbjct: 8   PVTALKGVGAALAEKLARV-----GLET-LQDILFHLPLRYQDRTRVTAIGALRPGADAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G ++  +   + +RR   + L DG+G ++L  FY  ++  K+    G  +   G+++ 
Sbjct: 62  VEGVVA-GADVVMGRRRSLLVRLQDGSGTLSL-RFYHFSQAQKDGLKRGTHLRCYGEVRP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
             + + + HP Y   N  D   P+   +  +Y    GL+    +++  +AL+ L    LP
Sbjct: 120 GASGLEIYHPEYRALNG-DEPIPVEQTLTPIYPTTEGLTQQRLRQLSQQALAMLGPSSLP 178

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLL 242
           +W+  +L +      + +A   +H P    D E  +  R     RLA++ELL  Q++L  
Sbjct: 179 DWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQR 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  + +    +    ++ ++ L N+ F PT +Q     +I  D++Q   MLR++QGDV
Sbjct: 239 LREAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+VA +A   A+EAG Q  +MAP  ILA+QH+    K+ Q   I V  + G +   
Sbjct: 299 GAGKTVVAALAALQAIEAGYQVALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419
            R  ALERI  G A +++GTHALFQD +++ +L L I+DEQHRFGVQQRL L QK     
Sbjct: 359 ARAAALERIGDG-APMVVGTHALFQDEVKFKRLALAIIDEQHRFGVQQRLALRQKGVDGR 417

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EVIER++  
Sbjct: 418 LCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAA 477

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   DK  VM++F
Sbjct: 478 CREGRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAF 537

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 538 KEGMLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYH 597

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL 
Sbjct: 598 PPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 657

Query: 658 IARKDAKHILTQDPDLTS 675
             R  A+ +L   P   S
Sbjct: 658 AVRDAAQSLLAHWPQHVS 675


>gi|163802262|ref|ZP_02196157.1| osmolarity sensor protein [Vibrio sp. AND4]
 gi|159174067|gb|EDP58877.1| osmolarity sensor protein [Vibrio sp. AND4]
          Length = 693

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 262/670 (39%), Positives = 395/670 (58%), Gaps = 26/670 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +    +    KR+   + ++DG G ITL FF   T  +KN F +G+ +   G+IK+
Sbjct: 64  IQGKVMAVDTI-FGKRKMLTVKISDGNGTITLRFF-NFTAAIKNNFSQGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFH-NSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
               + MVHP Y F+ N Q  +    +  VY    GL     + +  +ALS   +L +  
Sbjct: 122 GSMGLEMVHPDYKFYANEQKSDAEQSLTPVYPTTDGLRQITLRNLTEQALS---LLDKAA 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
            ++LL    +    ++++A + IH P    +     E   PA+ RL  +ELLA  +++L 
Sbjct: 179 VQELLPAGLYDHQITMSQALHTIHRPPPKINLDEFDEGKHPAQIRLIMEELLAQNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R + +++I +P+     + +++L  +PFSPT +Q   +K+I  D+ + + M+R++QGDV
Sbjct: 239 VRSKGQQDIALPLASCDSLKKQLLDQLPFSPTNAQARVVKEIEADLEKAHPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A A A+E G Q  +MAP  +LA+QH      + +   I V  + G +   
Sbjct: 299 GSGKTLVAALAAARAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIQVGWLAGKLKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   L  IA G+A +++GTHALFQ+ + ++ L LVI+DEQHRFGV QRL+L +K     
Sbjct: 359 AREAELACIASGEAQMVVGTHALFQEHVAFHHLALVIIDEQHRFGVHQRLELREKGAKQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++  
Sbjct: 419 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRSA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM +
Sbjct: 479 CLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQN 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKDNQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 599 HSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLI 658

Query: 657 EIARKDAKHI 666
              ++ A+HI
Sbjct: 659 PEVQRIARHI 668


>gi|114321587|ref|YP_743270.1| ATP-dependent DNA helicase RecG [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227981|gb|ABI57780.1| ATP-dependent DNA helicase RecG [Alkalilimnicola ehrlichii MLHE-1]
          Length = 705

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/654 (37%), Positives = 382/654 (58%), Gaps = 21/654 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           +P   P++  RGVG + +  L+++      +     DLLF+ P  + DR    ++  +  
Sbjct: 16  DPAGQPITALRGVGPQLAERLARL------HLATVQDLLFHLPLRYEDRDTVRRLGALRP 69

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
                + G + +H+     +R+   + ++DGTG   L+FF+      +     G  I   
Sbjct: 70  GESGVVIGRV-EHAGIAEGRRKRLIVQISDGTGSADLVFFHFHPGQ-RQQMRPGTPIRCF 127

Query: 127 GKIKKLKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           G+++       MVHP Y      ++ D     +  VY    GL     +K+I +AL+   
Sbjct: 128 GELRPGPTGPQMVHPEYRLGPRASAGDEGPHGLTPVYPTTQGLHQQTLRKLIDQALALAR 187

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIA 239
            +P+W+  +L ++   P++AEA   +H P    D     E   P  +RLA +ELLA  ++
Sbjct: 188 HMPDWLPAELTRELGLPALAEALYYVHKPPVDADTAPLVEGRHPCVQRLAVEELLAHHLS 247

Query: 240 LLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +  +R   +     P I+ +G++ +++L ++PF+ T++Q    +++ +DM++   MLR++
Sbjct: 248 MRRLRAHLQAAADAPTIHGDGRLTRRLLDSLPFALTEAQRRVDRELAEDMTRSVPMLRLV 307

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA +A   AVEAG QA IMAP  +LA+QH+    ++     I V  ++G 
Sbjct: 308 QGDVGSGKTVVAALAALRAVEAGYQAAIMAPTELLAEQHWRSFNEWLAPLDIPVGWVSGR 367

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L  +A G   +++GTHALFQD +++  L LVIVDEQHRFGV QRL L +K 
Sbjct: 368 AAGRRREAMLAALAAGDYPVVVGTHALFQDDVRFQALGLVIVDEQHRFGVHQRLALKEKG 427

Query: 419 ----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               + PH ++MTATPIPRTL +T+  D+D+S I + P GRKP+KTV +   R DEV+ R
Sbjct: 428 HRGRSQPHQIIMTATPIPRTLAMTAYADLDVSVIDQLPPGRKPVKTVAVSETRRDEVVAR 487

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +   L++G++AYW+C  IE+ +    ++  E + +L        + ++HGRM   DK++V
Sbjct: 488 IGAALAQGRQAYWVCTLIEDSEVLEAQAAEETYAALQAALPGHRVGLVHGRMKPADKDTV 547

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F  G   LL+ATTVIEVG++V +AS++IIENAE  GLAQLHQLRGRVGRGE  SSC+
Sbjct: 548 MADFAAGRIGLLVATTVIEVGVNVPNASLMIIENAERLGLAQLHQLRGRVGRGEAESSCV 607

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           L+YH PLS+ +  RL VL+ + DGF IA  DL+ R  GE+LG +Q+G   + +A
Sbjct: 608 LMYHGPLSQAARARLEVLRRSNDGFEIARRDLEIRGPGELLGTRQTGELSYRVA 661


>gi|229593368|ref|YP_002875487.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens SBW25]
 gi|229365234|emb|CAY53538.1| ATP-dependent DNA helicase [Pseudomonas fluorescens SBW25]
          Length = 691

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 259/683 (37%), Positives = 397/683 (58%), Gaps = 36/683 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+K+   G  N     D+LF+ P  + DR     I ++   +   +
Sbjct: 9   VTALKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGQLRPGQDAVV 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G ++   G+ +  
Sbjct: 63  EGTVS-GADVVMGKRRSLVVRLQDGTGGLSL-RFYHFSNAQKEGLKRGTRVRCYGEARPG 120

Query: 133 KNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188
            + + + HP Y  I  +        +  +Y L  GL+    +++ ++ L+ L    LP+W
Sbjct: 121 ASGLEIYHPEYRAITGDEPPPVDTTLTPIYPLTEGLTQQRLRQLCMQTLTMLGPKSLPDW 180

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIALL 241
           + ++L +      + +A   +H+P    D +       W   A+ RLA++ELL  Q++  
Sbjct: 181 LPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLSQQ 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R+  +      +    ++  + L N+ F+PT +Q+    +I  D+SQK  MLR++QGD
Sbjct: 238 RLRESMRSLRAPAMPKATRLPAQYLANLGFAPTGAQQRVGNEIAYDLSQKEPMLRLIQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKT+VA +A   A+EAG Q  +MAP  ILA+QH+   K++ +   + V  + G +  
Sbjct: 298 VGAGKTVVAALAALQALEAGYQVALMAPTEILAEQHFITFKRWLEPLGLEVAWLAGKLKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
            +R  ALE+IA G A +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L QK    
Sbjct: 358 KNRASALEQIAGG-APMVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRQKGVGG 416

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++   R  EVIER++ 
Sbjct: 417 RMNPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERVRG 476

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKES 532
             +EG++AYW+C  IEE +E   ++      + +E  TS+     + +IHGRM   +K +
Sbjct: 477 ACAEGRQAYWVCTLIEESEELTCQAA----ETTYEDLTSALGELKVGLIHGRMKPAEKAA 532

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM  FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C
Sbjct: 533 VMAEFKAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHC 592

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLYHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A     
Sbjct: 593 VLLYHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRD 652

Query: 653 DSLLEIARKDAKHILTQDPDLTS 675
             LL   R  A+ +L + P+  S
Sbjct: 653 ADLLPAVRDAAQALLERWPEHVS 675


>gi|303251147|ref|ZP_07337331.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307253511|ref|ZP_07535381.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649998|gb|EFL80170.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306859012|gb|EFM91055.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 693

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 270/678 (39%), Positives = 387/678 (57%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I    N       DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTALSGVGAAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLAAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y I  N+Q +     +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALA---LLDKIK 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLL 242
             +LL  +  P   S+ EA  ++H P     AK  E    PA++RL ++ELLA  +A+  
Sbjct: 179 VGELLPDEYNPHKYSLKEALQLLHRPPPDISAKQLEKGDHPAQKRLIFEELLAHNLAMQQ 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R    +    P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDV
Sbjct: 239 VRVGVNQLAAAPLRYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   LE I +G+  +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+   
Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478

Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+ +M  
Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAE 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++
Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
            + +  AK I+ Q+P L 
Sbjct: 659 PLVQNYAKQIIQQNPPLA 676


>gi|89076059|ref|ZP_01162419.1| putative ATP-dependent DNA helicase RecG [Photobacterium sp. SKA34]
 gi|89048211|gb|EAR53793.1| putative ATP-dependent DNA helicase RecG [Photobacterium sp. SKA34]
          Length = 693

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 265/674 (39%), Positives = 393/674 (58%), Gaps = 24/674 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+   GVG K +  L KI   G  N     DLLF+ P  + DR     I+     + +T+
Sbjct: 11  LAELSGVGAKMAEKLEKI---GLHN---VQDLLFHLPLRYEDRTRIWPINRAMPGQHLTV 64

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +  H+S    KR+   + + DGTG +TL FF     M KN F EG+++   G+IK  
Sbjct: 65  QGEV-HHTSITFGKRKMLAVKIGDGTGSVTLRFFNFNAAM-KNSFAEGKQVKAYGEIKGS 122

Query: 133 KNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188
           K  + ++HP Y IF    +++    +  VY    GL     + +  +AL+ L    + E 
Sbjct: 123 KFGLEIIHPDYRIFSEPTELSVEETLTPVYPTTDGLRQLTLRNLTDQALNLLDKAAVTEL 182

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMR 244
           + + L  ++   ++A+A   +H P      +       PA+ RL  +ELLA  +++L +R
Sbjct: 183 LPEGLYDRQM--TLAQALRAMHRPTPDISLDQLEAGKHPAQHRLILEELLAQNLSMLALR 240

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            + ++    P+  +  + Q++L ++PFSPT +Q+  + DI  D+ +   M+R++QGDVGS
Sbjct: 241 SKGQQHSAWPLAAKDSLKQQLLNSLPFSPTGAQQRVVADIEADLIKPQPMMRLVQGDVGS 300

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA +A   A+E G Q  +MAP  +LA+QH      +     I V  + G +    R
Sbjct: 301 GKTLVAALAALRAIEHGFQVALMAPTELLAEQHAINFANWFNPMGIQVGWMAGKLKGKAR 360

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---- 420
              L RIA G+  +++GTHALFQD +++  L LVI+DEQHRFGV QRL+L +K       
Sbjct: 361 ETELARIASGEVKMVVGTHALFQDHVKFENLALVIIDEQHRFGVHQRLELREKGANEGRY 420

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVL 479
           PH L+MTATPIPRTL +T+  D+D S I E P GR PI+TV +P  R  E+IER L   +
Sbjct: 421 PHQLVMTATPIPRTLAMTAYADMDTSVIDELPPGRTPIQTVALPDARRPEIIERILSACV 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  I+E +    ++  +  + L        I ++HGRM   +K++VM SFK
Sbjct: 481 NEGRQAYWVCTLIDESEVLEAQAASDTADELTGLLPDLKIGLVHGRMKAAEKQAVMASFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   LL+ATTVIEVG+DV +AS+++IEN E  GLAQLHQLRGRVGRG+  S C+LLYH 
Sbjct: 541 AGELNLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGKVASHCVLLYHA 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+ +F +A       ++  
Sbjct: 601 PLSKTAQKRLGVLRESSDGFVIAQRDLEIRGPGELLGTKQTGIAEFKVADLIRDQYMIPQ 660

Query: 659 ARKDAKHILTQDPD 672
            +K A++I    PD
Sbjct: 661 VQKLARYIHDSYPD 674


>gi|58697197|ref|ZP_00372606.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58536484|gb|EAL59876.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 559

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/567 (43%), Positives = 341/567 (60%), Gaps = 14/567 (2%)

Query: 42  IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           +DLLFY P S++DR      +++ E   +T    + +H S    + RPYKI++   +  I
Sbjct: 1   MDLLFYRPLSYVDRSKSLPDAQVGE--FITFIAKVYEHQSPTF-RGRPYKIVVESESQYI 57

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----FPLIE 157
            ++FF    + L  +F  G  + ++GK++K      + HP Y+   S D+N       IE
Sbjct: 58  FIVFFNYSVKYLYKLFPIGASVIISGKLEKFAEHWQITHPDYV---SLDINQFKKIACIE 114

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            VY L  G++      II   L  LP LPEWI+  L+++K + S  E+   +H P    +
Sbjct: 115 PVYQLCRGITNKRIGNIISSNLKELPDLPEWIDDTLIKQKKWLSWRESIIKLHRPSSLAE 174

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            E     R+RLAYDEL A Q+AL L RK   KE G    +  K  +++L  + F  T  Q
Sbjct: 175 AE---VCRKRLAYDELFAYQLALKLARKNHVKERGREFIILSKYKEQVLNELSFQLTNDQ 231

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI +I +    K RM+ +LQGDVGSGKT+VAL AM   VE   QA +MAP  ILA+QH
Sbjct: 232 TRAIDEISERQKSKYRMISLLQGDVGSGKTVVALFAMINVVENNMQAALMAPTTILAEQH 291

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y +I++    T I V ++TG   +  R+  +  +A G  +I+IGTHALFQ ++ +  L L
Sbjct: 292 YNWIEEVLSCTDIKVALLTGKTSRKERKIIMNELASGVLNIVIGTHALFQANVTFKNLGL 351

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            ++DEQ RFGV QR +L  K     +L +TATPIPRTL     GD++ S + EKP  R P
Sbjct: 352 AVIDEQQRFGVMQRNRLVGKGENADILFVTATPIPRTLQQAMYGDVECSILKEKPKSRLP 411

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           IKTV + I+R+ +VIE+LK  ++ G+KAYWICP IEE +E+N  +   RF  L + F   
Sbjct: 412 IKTVTMNISRVPDVIEKLKGAINRGEKAYWICPYIEENEETNIAAAEMRFQELQKTFLDK 471

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + IIHG+++   K+ VM SFK     LL+ATTVIEVGIDV DA+I+IIENAE FGL+QLH
Sbjct: 472 VGIIHGKLTQEQKDQVMFSFKRNEFSLLVATTVIEVGIDVPDATIMIIENAEQFGLSQLH 531

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNS 604
           QLRGRVGRG + S C+LLY   LSK+S
Sbjct: 532 QLRGRVGRGNKPSFCVLLYD-NLSKSS 557


>gi|90581395|ref|ZP_01237190.1| putative ATP-dependent DNA helicase RecG [Vibrio angustum S14]
 gi|90437372|gb|EAS62568.1| putative ATP-dependent DNA helicase RecG [Vibrio angustum S14]
          Length = 693

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 264/674 (39%), Positives = 394/674 (58%), Gaps = 24/674 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+   GVG K +  L KI   G  N     DLLF+ P  + DR     I+     + +T+
Sbjct: 11  LAELSGVGAKMAEKLEKI---GLHN---VQDLLFHLPLRYEDRTRIWPINRAMPGQHLTV 64

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +  H+S    KR+   + + DGTG +TL FF     M KN F EG+++   G+IK  
Sbjct: 65  QGEV-HHTSITFGKRKMLAVKIGDGTGSVTLRFFNFNAAM-KNSFAEGKQVKAYGEIKGS 122

Query: 133 KNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188
           K  + ++HP Y IF    +++    +  VY    GL     + +  +AL+ L    + E 
Sbjct: 123 KFGLEIIHPDYRIFSEPTELSVEETLTPVYPTTDGLRQLTLRNLTDQALNLLDKAAVTEL 182

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMR 244
           + + L  ++   ++A+A   +H P      +       PA+ RL  +ELLA  +++L +R
Sbjct: 183 LPEGLYDRQM--TLAQALRAMHRPTPDISLDQLEAGKHPAQHRLILEELLAQNLSMLALR 240

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            + ++    P+  +  + Q++L ++PFSPT +Q+  + DI  D+ +   M+R++QGDVGS
Sbjct: 241 SKGQQHSAWPLAAKDSLKQQLLDSLPFSPTGAQQRVVADIEADLIKPQPMMRLVQGDVGS 300

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA +A   A+E G Q  +MAP  +LA+QH      +     I V  + G +    R
Sbjct: 301 GKTLVAALAALRAIEHGFQVALMAPTELLAEQHAINFANWLNPMGIQVGWMAGKLKGKAR 360

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---- 420
              L RIA G+  +++GTHALFQD +++  L LVI+DEQHRFGV QRL+L +K       
Sbjct: 361 ETELARIASGEVKMVVGTHALFQDHVKFENLALVIIDEQHRFGVHQRLELREKGANDGRY 420

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVL 479
           PH L+MTATPIPRTL +T+  D+D S I E P GR PI+TV +P  R  E+IER++   +
Sbjct: 421 PHQLVMTATPIPRTLAMTAYADMDTSVIDELPPGRTPIQTVALPDARRPEIIERIRSACV 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  I+E +    ++  +  + L        I ++HGRM   +K++VM SFK
Sbjct: 481 NEGRQAYWVCTLIDESEVLEAQAASDTADELTGLLPDLKIGLVHGRMKAAEKQAVMASFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   LL+ATTVIEVG+DV +AS+++IEN E  GLAQLHQLRGRVGRG+  S C+LLYH 
Sbjct: 541 AGELDLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGKVASHCVLLYHA 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+ +F +A       ++  
Sbjct: 601 PLSKTAQKRLGVLRESSDGFVIAQRDLEIRGPGELLGTKQTGIAEFKVADLIRDQYMIPQ 660

Query: 659 ARKDAKHILTQDPD 672
            +K A++I    PD
Sbjct: 661 VQKLARYIHDSYPD 674


>gi|300113780|ref|YP_003760355.1| ATP-dependent DNA helicase RecG [Nitrosococcus watsonii C-113]
 gi|299539717|gb|ADJ28034.1| ATP-dependent DNA helicase RecG [Nitrosococcus watsonii C-113]
          Length = 713

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 255/652 (39%), Positives = 378/652 (57%), Gaps = 21/652 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P++T +GVG   +  L+++  C      +  DLLF+ P  + DR     IS + + R
Sbjct: 26  LATPVTTLKGVGPSLANRLARLGLC------KVQDLLFHLPQRYQDRTRVAPISLLQKGR 79

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              I G I Q    +  +R+     L+D TG+I L FF+  +   +N+   G ++   G+
Sbjct: 80  EALIEGEI-QLCELRPGRRQSLLCSLSDRTGKIFLRFFH-FSAWQQNLLTPGARVRCFGE 137

Query: 129 IKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PV 184
            ++    + MVHP Y  +  +   V    +  VY +  GL     + +I   L  L    
Sbjct: 138 PRQGAAGLEMVHPDYHRLSEDRPAVTEAYLTPVYPVTEGLRQSSLRDLIQGVLKDLGEEG 197

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240
           + + +    L     P+++EA   +H P          E   P ++RLA++ELLA  ++L
Sbjct: 198 IIDHVPSGFLAGIGLPTLSEALMYLHQPPPDAPLDLLAEGKHPVQQRLAFEELLAHHLSL 257

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R +        ++ EG++ Q+ L  +PF  T +Q    ++IL DM+Q++ M R+LQG
Sbjct: 258 RQLRLRTSCLQAPLLSSEGRLQQRFLATLPFPLTAAQSQVAQEILADMAQESPMQRLLQG 317

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A+  AVEAG QAV+MAP  +LA+QH   ++ +   + I VE +     
Sbjct: 318 DVGSGKTVVAALAILQAVEAGYQAVLMAPTELLAEQHLRVLQDWFCPSDIKVEWLAAKRT 377

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418
              RR++LER+  G+  + +GTHALFQ+ + ++ L LV+VDEQHRFGV+QRL L +K   
Sbjct: 378 AKARRESLERLEGGETAVAVGTHALFQEGVNFHNLGLVVVDEQHRFGVEQRLALREKGRY 437

Query: 419 --TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
             + PH L+MTATPIPRTL +T+  D+D S I + P GR P+ T +    R DEV+ R++
Sbjct: 438 GNSCPHQLIMTATPIPRTLAMTAYADLDTSVIDQLPPGRIPVATAVASDRRRDEVVARVR 497

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
                G++AYW+C  IEE      ++  E    L E      I +IHGRM   +KE  M 
Sbjct: 498 WACRAGRQAYWVCTLIEESDSLQAQAAEESAAELAEALPELRIGLIHGRMKTQEKERTMA 557

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK+G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+LL
Sbjct: 558 AFKSGILHLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGAADSYCVLL 617

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           YH PLS+ S  RL+ L+ T DGF IA  DL+ R  GE+LG +Q+G+P++ +A
Sbjct: 618 YHGPLSELSRARLACLRATNDGFEIARRDLELRGPGEVLGTRQTGLPQYRVA 669


>gi|28896931|ref|NP_796536.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837892|ref|ZP_01990559.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus AQ3810]
 gi|260895519|ref|ZP_05904015.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus Peru-466]
 gi|28805139|dbj|BAC58420.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748755|gb|EDM59600.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus AQ3810]
 gi|308088485|gb|EFO38180.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus Peru-466]
          Length = 693

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 261/671 (38%), Positives = 397/671 (59%), Gaps = 28/671 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F +G+ +   G+IK+
Sbjct: 64  VQGKVMTVDTI-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFSQGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
               + +VHP Y F+ S+   DV   L   VY    GL     + +  +AL+   +L + 
Sbjct: 122 GGMGLEIVHPDYKFYASEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALA---LLDKA 177

Query: 189 IEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241
             ++LL    +    ++++A + IH P    +     E   PA+ RL  +ELLA  +++L
Sbjct: 178 AVQELLPSGLYNHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R + +++I +P+    K+ +++L  +PFSPT +Q   +K+I  D+ + + M+R++QGD
Sbjct: 238 AVRSKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIESDLEKPHPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +  
Sbjct: 298 VGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             +   L RIA G+A +I+GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K    
Sbjct: 358 KAKETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++ 
Sbjct: 418 GAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM 
Sbjct: 478 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 EFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YH PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L
Sbjct: 598 YHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRL 657

Query: 656 LEIARKDAKHI 666
           +   ++ A+HI
Sbjct: 658 IPEVQRIARHI 668


>gi|254515854|ref|ZP_05127914.1| ATP-dependent DNA helicase RecG [gamma proteobacterium NOR5-3]
 gi|219675576|gb|EED31942.1| ATP-dependent DNA helicase RecG [gamma proteobacterium NOR5-3]
          Length = 686

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/669 (37%), Positives = 380/669 (56%), Gaps = 17/669 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L + RGVG K +  L           +   DLLF+ P  + DR     I  + +   V I
Sbjct: 9   LESLRGVGPKLAQRLRSY------GISSVEDLLFHLPLRYQDRTQVTPIGALQDGTEVVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G I+  S     +RR   + L DGTG  TL FF+      KN   +G ++   G +++ 
Sbjct: 63  EGEIALVSVSGGGRRRSLLVKLQDGTGTATLRFFHFSMAQ-KNALQKGDRLRCFGAVRRG 121

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192
             +  M+HP Y      D N   +  +Y    G+S   ++K+  +AL  L   P    + 
Sbjct: 122 PAQAEMIHPEYRRSFGNDGNEDSLTPIYPSTEGVSQGQWRKLTDQALLILAKNPP--AEL 179

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFK 248
           L  + +   ++ A   +H P    D     + + PA+ RLA +EL A Q+++  +R + +
Sbjct: 180 LPARNNTYDLSSALRFLHRPPPGADLQALRDGSHPAQLRLALEELTAHQLSMRELRARSR 239

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +     +  +  + ++ +  +PF PT +Q   I++I  D++    MLR++QGDVGSGKT+
Sbjct: 240 ERAAPILEDKQGLKKRFIAALPFEPTGAQHRVIEEITADLATAKPMLRLVQGDVGSGKTI 299

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA  A   A+ +G Q  +MAP  +LA+QH      +  +  I    + G++    R +AL
Sbjct: 300 VAAAAALLAIASGYQVAVMAPTELLAEQHRRNFATWFADLNITQMWLAGSVKGQKRGQAL 359

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLL 425
             IA+G+A ++IGTHALFQD +Q+ +L LVIVDEQHRFGV QRL L++K       H L+
Sbjct: 360 AAIANGEASLVIGTHALFQDGVQFARLGLVIVDEQHRFGVHQRLALSEKTAGESRAHQLI 419

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL + +  D+D S I E P GR+P+ TV+I   R DE+IER+     EG++ 
Sbjct: 420 MTATPIPRTLSMVAYADLDCSIIDELPPGRQPVGTVLIDNQRRDEIIERVAHACREGRQV 479

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           YW+C  IE+      ++    +  L +     ++A++HGRM   +K++VM +FK G  +L
Sbjct: 480 YWVCTLIEDSDSLQAQAAESSYAELADALDGIAVALVHGRMKAKEKDAVMSAFKAGEYQL 539

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+ATTVIEVG+DV +A+++IIEN E  GLAQLHQLRGRVGRG   S C+LLY  PL + S
Sbjct: 540 LVATTVIEVGVDVPNATLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYQSPLGQQS 599

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL V++ + DGF IAEEDL+QR  GE+LG +Q+G+ +F +A+   H+ LL+  +  A+
Sbjct: 600 RARLQVMRESNDGFYIAEEDLRQRGPGEVLGTRQTGLMEFRVARLPEHEHLLDEVQSMAE 659

Query: 665 HILTQDPDL 673
            +    P L
Sbjct: 660 TLQASQPQL 668


>gi|328471707|gb|EGF42584.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus 10329]
          Length = 693

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 261/670 (38%), Positives = 395/670 (58%), Gaps = 26/670 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F +G+ +   G+IK+
Sbjct: 64  VQGKVMTVDTI-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFSQGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + +VHP Y F+ S+   DV   L   VY    GL     + +  +AL+ L    + 
Sbjct: 122 GGMGLEIVHPDYKFYASEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALALLDKAAVQ 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L   +   ++++A + IH P    +     E   PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPSGLYNHQI--TMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R + +++I +P+    K+ +++L  +PFSPT +Q   +K+I  D+ + + M+R++QGDV
Sbjct: 239 VRSKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIESDLEKPHPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +   
Sbjct: 299 GSGKTLVAALAAVRAIEHGYQVTLMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            +   L RIA G+A +I+GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K     
Sbjct: 359 AKETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++  
Sbjct: 419 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  
Sbjct: 479 CLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQE 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 599 HSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLI 658

Query: 657 EIARKDAKHI 666
              ++ A+HI
Sbjct: 659 PEVQRIARHI 668


>gi|308094586|ref|ZP_05890187.2| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus AN-5034]
 gi|308125968|ref|ZP_05778375.2| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus K5030]
 gi|308089992|gb|EFO39687.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus AN-5034]
 gi|308113429|gb|EFO50969.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus K5030]
          Length = 689

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 261/670 (38%), Positives = 395/670 (58%), Gaps = 26/670 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 6   PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 59

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F +G+ +   G+IK+
Sbjct: 60  VQGKVMTVDTI-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFSQGKLVHAYGEIKR 117

Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + +VHP Y F+ S+   DV   L   VY    GL     + +  +AL+ L    + 
Sbjct: 118 GGMGLEIVHPDYKFYASEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALALLDKAAVQ 176

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L   +   ++++A + IH P    +     E   PA+ RL  +ELLA  +++L 
Sbjct: 177 ELLPSGLYNHQI--TMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLA 234

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R + +++I +P+    K+ +++L  +PFSPT +Q   +K+I  D+ + + M+R++QGDV
Sbjct: 235 VRSKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIESDLEKPHPMMRLVQGDV 294

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +   
Sbjct: 295 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGK 354

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            +   L RIA G+A +I+GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K     
Sbjct: 355 AKETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQG 414

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++  
Sbjct: 415 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNA 474

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  
Sbjct: 475 CLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQE 534

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 535 FKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLY 594

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 595 HSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLI 654

Query: 657 EIARKDAKHI 666
              ++ A+HI
Sbjct: 655 PEVQRIARHI 664


>gi|223042049|ref|ZP_03612226.1| ATP-dependent DNA helicase [Actinobacillus minor 202]
 gi|223017166|gb|EEF15601.1| ATP-dependent DNA helicase [Actinobacillus minor 202]
          Length = 693

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 265/678 (39%), Positives = 389/678 (57%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  L +I   G  N     DLLF+ P  + DR     I++I  E   T
Sbjct: 10  PLTALSGVGAAIAEKLGRI---GIHN---VQDLLFHLPMRYEDRTRITPIADIRPESFAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I GY+ Q +  Q  +R    + L+D T +I L FF     M KN F  G ++   G+IK+
Sbjct: 64  IEGYV-QLTEVQFGRRPILSVTLSDSTSKIMLKFFNFNAGM-KNSFATGVRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y I  N+Q +     +  +YS   GL     +K+  +AL+   VL    
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQASLRKLTEQALA---VLNNVQ 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLL 242
             +LL  +  P   S+ EA  ++H P  +   E       PA++RL ++ELLA  +A+  
Sbjct: 179 VAELLPNEYNPHQYSLKEALQLLHRPPPSITPEILEKGEHPAQKRLIFEELLAHNLAMQQ 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   K++   P+  +  +  + L  +PF PT++Q     DI +D++Q + M+R++QGDV
Sbjct: 239 LRLGVKQQFAEPLRYQTDLKSRFLAGLPFQPTQAQSRVTADIERDLAQNSPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   LE I +G   +IIGTHALFQ++++++ L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARNAQLEAIKNGDVQMIIGTHALFQENVEFHDLALVIIDEQHRFGVHQRLTLREKGAKGD 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KV 477
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV+I   R  E+++R+ + 
Sbjct: 419 VYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEERRAEIVQRVYQA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+++M  
Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQAIMAE 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+L+Y
Sbjct: 539 FKAANLDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGSTASHCVLMY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL V+++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++
Sbjct: 599 KPPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVADLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
            + ++ AK I+ ++P L 
Sbjct: 659 PLVQRYAKQIIVENPPLA 676


>gi|313501284|gb|ADR62650.1| RecG [Pseudomonas putida BIRD-1]
          Length = 692

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 254/678 (37%), Positives = 391/678 (57%), Gaps = 23/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG+  +  L+K+   G  N     D+LF+ P  + DR     I ++   +   
Sbjct: 8   PVTVLKGVGEAMAEKLAKV---GLEN---LQDMLFHLPLRYQDRTRVVPIGQLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +S  +   + KRR   + L DG+G +TL  FY  +   K     G  +   G+ + 
Sbjct: 62  IEGVVS-GADVTMGKRRSLVVRLGDGSGVLTL-RFYHFSNAQKEGLKRGTHLRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
             + + + HP Y   N  +   P+   +  +Y    GL+    + +  ++L+ L    LP
Sbjct: 120 GASGLEIYHPEYRALNGNEPPPPVEQTLTPIYPSTEGLTQQRLRLLCQQSLALLGPRSLP 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           +W+  +L +      + EA   +HNP    D     E    A+ RLA++ELL  Q++   
Sbjct: 180 DWLPDELARDYQLAPLDEAIRYLHNPPADADLDELAEGQHWAQHRLAFEELLTHQLSQQR 239

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  +      +    ++  + L N+ F PT +Q+    +I  D+SQ   M+R++QGDV
Sbjct: 240 LRESLRSLRAPVLPRATRLQAQYLANLGFQPTGAQQRVANEIAYDLSQHEPMMRLVQGDV 299

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+VA +A   A+EAG Q  +MAP  ILA+QHY   K++ +   I V  + G +   
Sbjct: 300 GAGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKLKGK 359

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R  +LE+IA+G A +++GTHALFQ+ +++  L L I+DEQHRFGVQQRL L +K  A  
Sbjct: 360 ARAASLEQIANG-APMVVGTHALFQEEVRFKHLALAIIDEQHRFGVQQRLALRKKGVAGE 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++  
Sbjct: 419 LCPHQLIMTATPIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAA 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K  +M  F
Sbjct: 479 CAEGRQAYWVCTLIEESEELTCQAAESTYEELGSALGELKVGLIHGRMKPAEKAEIMAEF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYH
Sbjct: 539 KAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL 
Sbjct: 599 PPLSQIGRERLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 658

Query: 658 IARKDAKHILTQDPDLTS 675
             R  A+ ++++ P+  S
Sbjct: 659 AVRDAAQALVSRWPEHVS 676


>gi|307547000|ref|YP_003899479.1| ATP-dependent DNA helicase RecG [Halomonas elongata DSM 2581]
 gi|307219024|emb|CBV44294.1| ATP-dependent DNA helicase RecG [Halomonas elongata DSM 2581]
          Length = 693

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 263/686 (38%), Positives = 391/686 (56%), Gaps = 28/686 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++ L AP++  +GVG+  +L L+++            DLLF+ P  + DR     I+ + 
Sbjct: 1   MSELDAPVTNLKGVGEALALKLARL------RIESVADLLFHLPLRYQDRTRVTPIATLR 54

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
                 + G ++  +     +RR   + L DG+G ++L FF+      +  F  G ++  
Sbjct: 55  AGGEAVVEGEVAA-AEVVRGRRRSLLVRLRDGSGILSLRFFHFSPAQ-QQQFRAGIRVRA 112

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL 182
            G+ +     + + HP Y   N  D   P+   +  +Y    GL     + +I +AL+RL
Sbjct: 113 FGEARAGATGLEIYHPEYRLLN--DATAPVEDHLTPIYPTTEGLHQTRLRALIGQALARL 170

Query: 183 PV----LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELL 234
                 LPEW+   L Q+ + P++ E    +H P    D     E   PA  RLA +ELL
Sbjct: 171 DAAPDELPEWLPDTLRQRFALPALHECLQTLHRPPPDADPQALAEGQHPATRRLALEELL 230

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           A Q++L  +R + +++ G P   +G+  Q + L  +PFS T +Q   + +I  D++ +  
Sbjct: 231 AHQLSLREVRLRIQRD-GAPSLPDGRGLQARFLTQLPFSLTGAQRRVLDEIRADLAGEMP 289

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           MLR++QGDVGSGKT+VA +A  +A+  G QA IMAP  ILA+QHY   + + +   I V 
Sbjct: 290 MLRLVQGDVGSGKTVVAAMAALSAIAGGCQAAIMAPTEILAEQHYRAFRAWFEPLGIDVA 349

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    R      I  G+A +++GTHALFQ  + + +L L IVDEQHRFGV QRL 
Sbjct: 350 WLAGKLKGKARLDTKAAIHDGRAQMVVGTHALFQGDVHFQRLGLAIVDEQHRFGVHQRLA 409

Query: 414 LTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L +K  A    PH L+MTATPIPRTL +++  D+D+S I E P GR P+KT ++P  R  
Sbjct: 410 LREKGEAGGFTPHQLVMTATPIPRTLAMSAYADLDVSVIDELPPGRTPVKTAVVPDERRP 469

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528
           EV+ER++   +EG++AYW+C  IEE +    ++     + L E     +I ++HGRM   
Sbjct: 470 EVVERIRHACAEGRQAYWVCTLIEESEALQCQAAEATRDELVEALPGLNIGLVHGRMKAS 529

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +K  VM++FK G   LL+ATTVIEVG+DV +AS++IIEN E  GL+QLHQLRGRVGRG  
Sbjct: 530 EKAEVMEAFKEGELDLLVATTVIEVGVDVPNASLMIIENPERLGLSQLHQLRGRVGRGST 589

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            S C+LLYHPPLS  S  RL+V++ T DGF IAE DL+ R  GE+LG +Q+G+ +  IA 
Sbjct: 590 ESYCLLLYHPPLSDTSRQRLTVMRETTDGFRIAERDLEIRGPGEVLGTRQTGLAQMKIAD 649

Query: 649 PELHDSLLEIARKDAKHILTQDPDLT 674
            E    LL      A+ +L   P+ +
Sbjct: 650 LERDADLLPHVSPLAEALLATHPEAS 675


>gi|148550419|ref|YP_001270521.1| ATP-dependent DNA helicase RecG [Pseudomonas putida F1]
 gi|148514477|gb|ABQ81337.1| ATP-dependent DNA helicase RecG [Pseudomonas putida F1]
          Length = 692

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 254/678 (37%), Positives = 391/678 (57%), Gaps = 23/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG+  +  L+K+   G  N     D+LF+ P  + DR     I ++   +   
Sbjct: 8   PVTVLKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGQLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +S  +   + KRR   + L DG+G +TL  FY  +   K     G  +   G+ + 
Sbjct: 62  IEGVVS-GADVTMGKRRSLVVRLGDGSGVLTL-RFYHFSNAQKESLKRGTHLRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
             + + + HP Y   N  +   P+   +  +Y    GL+    + +  ++L+ L    LP
Sbjct: 120 GASGLEIYHPEYRALNGNEPPPPVEQTLTPIYPSTEGLTQQRLRLLCQQSLALLGPRSLP 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           +W+  +L +      + EA   +HNP    D     E    A+ RLA++ELL  Q++   
Sbjct: 180 DWLPDELARDYQLAPLDEAIRYLHNPPADADLDELAEGQHWAQHRLAFEELLTHQLSQQR 239

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  +      +    ++  + L N+ F PT +Q+    +I  D+SQ   M+R++QGDV
Sbjct: 240 LRESLRSLRAPVLPKATRLQAQYLANLGFQPTGAQQRVANEIAYDLSQHEPMMRLVQGDV 299

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+VA +A   A+EAG Q  +MAP  ILA+QHY   K++ +   I V  + G +   
Sbjct: 300 GAGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKLKGK 359

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R  +LE+IA+G A +++GTHALFQ+ +++  L L I+DEQHRFGVQQRL L +K  A  
Sbjct: 360 ARAASLEQIANG-APMVVGTHALFQEEVRFKHLALAIIDEQHRFGVQQRLALRKKGVAGE 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++  
Sbjct: 419 LCPHQLIMTATPIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAA 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K  +M  F
Sbjct: 479 CAEGRQAYWVCTLIEESEELTCQAAESTYEELGSALGELRVGLIHGRMKPAEKAEIMAEF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYH
Sbjct: 539 KAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL 
Sbjct: 599 PPLSQIGRERLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 658

Query: 658 IARKDAKHILTQDPDLTS 675
             R  A+ ++++ P+  S
Sbjct: 659 AVRDAAQALVSRWPEHVS 676


>gi|307257926|ref|ZP_07539680.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306863573|gb|EFM95502.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 693

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 269/678 (39%), Positives = 387/678 (57%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I    N       DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTALSGVGAAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y I  N+Q +     +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALA---LLDKIK 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLL 242
             +LL  +  P   S+ EA  ++H P     A+  E    PA++RL ++ELLA  +A+  
Sbjct: 179 VGELLPDEYNPHKYSLKEALQLLHRPPPDISAEQLEKGEHPAQKRLIFEELLAHNLAMQQ 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R    +    P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDV
Sbjct: 239 VRVGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   LE I +G+  +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+   
Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478

Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+ +M  
Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAE 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++
Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
            + +  AK I+ Q+P L 
Sbjct: 659 PLVQNYAKQIIQQNPPLA 676


>gi|307246757|ref|ZP_07528825.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255741|ref|ZP_07537544.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307260193|ref|ZP_07541902.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306852332|gb|EFM84569.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306861301|gb|EFM93292.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865738|gb|EFM97617.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 693

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 269/678 (39%), Positives = 387/678 (57%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I    N       DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTALSGVGAAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y I  N+Q +     +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALA---LLDKIK 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLL 242
             +LL  +  P   S+ EA  ++H P     A+  E    PA++RL ++ELLA  +A+  
Sbjct: 179 VGELLPDEYNPHKYSLKEALQLLHRPPPDISAEQLEKGEHPAQKRLIFEELLAHNLAMQQ 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R    +    P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDV
Sbjct: 239 VRVGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   LE I +G+  +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+   
Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478

Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+ +M  
Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAE 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++
Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
            + +  AK I+ Q+P L 
Sbjct: 659 PLVQNYAKQIIQQNPPLA 676


>gi|240948170|ref|ZP_04752573.1| ATP-dependent DNA helicase RecG [Actinobacillus minor NM305]
 gi|240297523|gb|EER48030.1| ATP-dependent DNA helicase RecG [Actinobacillus minor NM305]
          Length = 693

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 265/678 (39%), Positives = 389/678 (57%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  L +I   G  N     DLLF+ P  + DR     I++I  E   T
Sbjct: 10  PLTALSGVGAAIAEKLGRI---GIHN---VQDLLFHLPMRYEDRTRITPIADIRPESFAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I GY+ Q +  Q  +R    + L+D T +I L FF     M KN F  G ++   G+IK+
Sbjct: 64  IEGYV-QLTEVQFGRRPILSVTLSDSTSKIMLKFFNFNAGM-KNSFATGVRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y I  N+Q +     +  +YS   GL     +K+  +AL+   VL    
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQASLRKLTEQALA---VLNNVQ 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
             +LL  +  P   S+ EA  ++H P  +   E       PA++RL ++ELLA  +A+  
Sbjct: 179 VAELLPNEYNPHQYSLKEALQLLHRPPPSITPEMLEKGEHPAQKRLIFEELLAHNLAMQQ 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   K++   P+  +  +  + L  +PF PT++Q     DI +D++Q + M+R++QGDV
Sbjct: 239 LRLGVKQQFAEPLRYQTDLKSRFLAGLPFQPTQAQSRVTADIERDLAQNSPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   LE I +G   +IIGTHALFQ++++++ L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARAAQLEAIKNGDVQMIIGTHALFQENVEFHHLALVIIDEQHRFGVHQRLTLREKGAKGD 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KV 477
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV+I   R  E+++R+ + 
Sbjct: 419 VYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEERRAEIVQRVYQA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+++M  
Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQAIMAE 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+L+Y
Sbjct: 539 FKAANLDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGSTASHCVLMY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL V+++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++
Sbjct: 599 KPPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVADLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
            + ++ AK I+ ++P L 
Sbjct: 659 PLVQRYAKQIIVENPPLA 676


>gi|26991986|ref|NP_747411.1| ATP-dependent DNA helicase RecG [Pseudomonas putida KT2440]
 gi|24987117|gb|AAN70875.1|AE016731_10 ATP-dependent DNA helicase RecG [Pseudomonas putida KT2440]
          Length = 692

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 254/678 (37%), Positives = 391/678 (57%), Gaps = 23/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG+  +  L+K+   G  N     D+LF+ P  + DR     I ++   +   
Sbjct: 8   PVTVLKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGQLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +S  +   + KRR   + L DG+G +TL  FY  +   K     G  +   G+ + 
Sbjct: 62  IEGVVS-GADVTMGKRRSLVVRLGDGSGVLTL-RFYHFSNAQKEGLKRGTHLRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
             + + + HP Y   N  +   P+   +  +Y    GL+    + +  ++L+ L    LP
Sbjct: 120 GASGLEIYHPEYRALNGNEPPPPVEQTLTPIYPSTEGLTQQRLRLLCQQSLALLGPRSLP 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           +W+  +L +      + EA   +HNP    D     E    A+ RLA++ELL  Q++   
Sbjct: 180 DWLPDELARDYQLAPLDEAIRYLHNPPADADLDELAEGQHWAQHRLAFEELLTHQLSQQR 239

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  +      +    ++  + L N+ F PT +Q+    +I  D+SQ   M+R++QGDV
Sbjct: 240 LRESLRSLRAPVLPRATRLQAQYLANLGFQPTGAQQRVANEIAYDLSQHEPMMRLVQGDV 299

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+VA +A   A+EAG Q  +MAP  ILA+QHY   K++ +   I V  + G +   
Sbjct: 300 GAGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKLKGK 359

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R  +LE+IA+G A +++GTHALFQ+ +++  L L I+DEQHRFGVQQRL L +K  A  
Sbjct: 360 ARAASLEQIANG-APMVVGTHALFQEEVRFKHLALAIIDEQHRFGVQQRLALRRKGVAGE 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++  
Sbjct: 419 LCPHQLIMTATPIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAA 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K  +M  F
Sbjct: 479 CAEGRQAYWVCTLIEESEELTCQAAESTYEELGSALGELKVGLIHGRMKPAEKAEIMAEF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYH
Sbjct: 539 KAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL 
Sbjct: 599 PPLSQIGRERLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 658

Query: 658 IARKDAKHILTQDPDLTS 675
             R  A+ ++++ P+  S
Sbjct: 659 AVRDAAQALVSRWPEHVS 676


>gi|260902543|ref|ZP_05910938.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus AQ4037]
 gi|308109661|gb|EFO47201.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus AQ4037]
          Length = 693

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 261/670 (38%), Positives = 394/670 (58%), Gaps = 26/670 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F +G+ +   G+IK+
Sbjct: 64  VQGKVMTVDTI-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFSQGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + +VHP Y F+ S+   DV   L   VY    GL     + +  +AL  L    + 
Sbjct: 122 GGMGLEIVHPDYKFYASEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALVLLDKAAVQ 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L   +   ++++A + IH P    +     E   PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPSGLYNHQI--TMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R + +++I +P+    K+ +++L  +PFSPT +Q   +K+I  D+ + + M+R++QGDV
Sbjct: 239 VRSKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIESDLEKPHPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +   
Sbjct: 299 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            +   L RIA G+A +I+GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K     
Sbjct: 359 AKETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++  
Sbjct: 419 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  
Sbjct: 479 CLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQE 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 599 HAPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLI 658

Query: 657 EIARKDAKHI 666
              ++ A+HI
Sbjct: 659 PEVQRIARHI 668


>gi|303252704|ref|ZP_07338866.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248898|ref|ZP_07530909.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648443|gb|EFL78637.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854593|gb|EFM86785.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 693

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 269/678 (39%), Positives = 387/678 (57%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I    N       DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTALSGVGVAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y I  N+Q +     +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALA---LLDKIK 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLL 242
             +LL  +  P   S+ EA  ++H P     A+  E    PA++RL ++ELLA  +A+  
Sbjct: 179 VGELLPDEYNPHKYSLKEALQLLHRPPPDISAEQLEKGEHPAQKRLIFEELLAHNLAMQQ 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R    +    P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDV
Sbjct: 239 VRVGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   LE I +G+  +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+   
Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478

Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+ +M  
Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAE 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++
Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
            + +  AK I+ Q+P L 
Sbjct: 659 PLVQNYAKQIIQQNPPLA 676


>gi|292572214|gb|ADE30129.1| ATP-dependent DNA helicase RecG [Rickettsia prowazekii Rp22]
          Length = 724

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 270/694 (38%), Positives = 392/694 (56%), Gaps = 36/694 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LFAP+  F  + +     +S +   G  N     DLLFY P S+ ++   P ++++    
Sbjct: 31  LFAPVKAFINIREDT---VSALKRLGIKN---IRDLLFYLPVSYQNKILSPNLTKVRGGE 84

Query: 69  IVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           I+     ++   S  LQKR  +P KI  ++ TG + L+FF++  + + N    G K  ++
Sbjct: 85  IIQTEIIVN---SINLQKRGNQPLKITASNNTGSLLLVFFHKPPQFILNKLKVGTKHIIS 141

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK++    ++ ++HP +I +         IE +YS+   LS       I++A+       
Sbjct: 142 GKVQFFDYQLQILHPEFITNPQLS---KAIEPLYSMTYSLSNTQLYSYIIKAIEIFEEKC 198

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIH---NPRKAKDFEWTS-----------PARERLAYDE 232
             IE   L K+    I +   I+H   +P        T+            A+++LA  E
Sbjct: 199 NGIEDKEL-KEYLDVILQNLKILHVFLSPHNLISCSRTTDIVVNPSYAIVAAKKQLAIKE 257

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           L+A QI+LL +R Q  ++ G        I + ILR + F  T  Q+  I++I  + S K 
Sbjct: 258 LIANQISLLNVRMQINRKHGNIYPKAASIQENILRELGFELTYYQKQVIEEIEFEQSDKV 317

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R+LQGDVGSGKTLVAL+ M   V  G QA +MAP  +LA QHY+F  K  +NT I V
Sbjct: 318 EMMRLLQGDVGSGKTLVALLTMVNVVTTGFQATLMAPTDLLANQHYDFFVKALKNTNIRV 377

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG +    RR  + ++ +G+  I+IGTHALFQ+ + + KL  +++DEQHRFGVQQRL
Sbjct: 378 GLLTGKILGKARRNIIIQLVNGKIDILIGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRL 437

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L  K   P VL+MTATPIPR+L LT  GD+ +SK+  KP  R  I T  + +N+I  +I
Sbjct: 438 NLINKGVNPDVLIMTATPIPRSLALTMFGDMTVSKLIGKPKNRLSIVTKTMSVNKIGYII 497

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFR------SVVERFNSLHEHFTSSIAIIHGRMS 526
           + +   L  G++ YWICP I ++++   +       V+ RFNS+   +     IIHG+M 
Sbjct: 498 KAINKRLIAGERVYWICPLITQREKETLQEDLLLMDVINRFNSIKNIYQGYTGIIHGKMK 557

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           +  KE +M  FK G  K+L+AT VIEVGIDV +A++I+IENAE FGLAQLHQLRGRVGRG
Sbjct: 558 NDQKERIMKQFKEGEIKILVATNVIEVGIDVSEATLIVIENAEQFGLAQLHQLRGRVGRG 617

Query: 587 EEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
              S CILLY+P  L K +  R  ++K+T DGF IAE+DLK R  GEILGIKQSG   F 
Sbjct: 618 RLQSYCILLYNPKRLGKVAQNRFKIMKHTNDGFYIAEQDLKLRGSGEILGIKQSGEIDFF 677

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
            A      +LL  A K A+  ++   ++  V  Q
Sbjct: 678 FADLAEDYALLIKAHKIAEREISLKDNVNFVNFQ 711


>gi|330814102|ref|YP_004358341.1| ATP-dependent DNA helicase RecG [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487197|gb|AEA81602.1| ATP-dependent DNA helicase RecG [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 687

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/693 (36%), Positives = 403/693 (58%), Gaps = 12/693 (1%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+ ++  +GVG   S    K+ + G  N+   IDL    P+  IDR + PK+ ++    
Sbjct: 6   LFSSVNKIKGVGPVIS---KKLSDKGIENK---IDLFLNLPTGAIDRRFCPKLDQLEVGV 59

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I TI     ++S  +  +  P ++   D  G I ++FF  +   ++ +     ++ ++GK
Sbjct: 60  ISTIFVRPIKYSIPRF-RNLPNRVTCKDEYGSIDIIFFNSRESYIRQILPLNEEVVISGK 118

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           +   KN+  M +P YI    ++ +   I A YS   G+S    +KI  E + +L  + EW
Sbjct: 119 VGFYKNKYQMTNPDYIQSIDKEKDITKIMAKYSSVAGISPKTIQKIYKEEIGKLKDIGEW 178

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
             +D L+K ++P+  +A   +HNP    D    S   +RLA+DE+ +  +    ++K+ K
Sbjct: 179 HSQDFLKKMAWPTWYDAIYNLHNPINVSDVNKESKFYKRLAFDEIFSNFLIFSEIKKRIK 238

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K I +   ++     KI   +PF+ TKSQ+ A+K+IL D+S + +MLR+LQGDVGSGKT 
Sbjct: 239 KLIKVSKVIDEDNLLKIKEMLPFTLTKSQQEALKEILTDISSERKMLRVLQGDVGSGKTA 298

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA+IA    V++G Q   + P  +LA+QH+   KK  +N  + V+++T  +  + +    
Sbjct: 299 VAMIAAYLTVKSGYQVAFLCPTELLAKQHFLLFKKVLENENLNVQLLTSKIKGSEQVDTR 358

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMT 427
            +++  +  I++GTH+LFQ+   +  L L+++DEQH+FGVQQR+ L+ K +    VLLMT
Sbjct: 359 FQLSQNKVDIVVGTHSLFQEKTTFNNLGLIVIDEQHKFGVQQRINLSLKGSVNTDVLLMT 418

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL+LT+ GD+DIS I EKP     I T+  P  ++D+V+  LK  L E  + YW
Sbjct: 419 ATPIPRTLILTNYGDMDISTINEKPFNNTTINTLAKPAEQMDDVMFFLKKRLDEKDQVYW 478

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           + P IEE ++      V+R+  L +     + ++HG M   +K  +M+ F +G  K++++
Sbjct: 479 VTPLIEESEKLKLTPAVKRYEYLKKKLKVEVGLVHGAMKSEEKNKIMEDFISGKIKVIVS 538

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVGID  +A+ +IIEN E FGL+QLHQLRGRVGRG+  + C+LLY   +  N   R
Sbjct: 539 TTVIEVGIDNQNANTMIIENCERFGLSQLHQLRGRVGRGKVDAHCLLLYSKNIGINGKKR 598

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           + +LK++ DGF I+EEDLK R  G+I+G KQSG   F+IA P  H  L ++A+++ +++ 
Sbjct: 599 IQILKSSLDGFYISEEDLKLRGFGDIIGYKQSGEKDFIIADPAYHSDLFQLAKEEIENLE 658

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            ++  L     Q    LL +++ +     I  G
Sbjct: 659 NKNVKLE----QHFSQLLKIFKKDRVLNIIDTG 687


>gi|109896683|ref|YP_659938.1| ATP-dependent DNA helicase RecG [Pseudoalteromonas atlantica T6c]
 gi|109698964|gb|ABG38884.1| ATP-dependent DNA helicase RecG [Pseudoalteromonas atlantica T6c]
          Length = 691

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 255/651 (39%), Positives = 385/651 (59%), Gaps = 26/651 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG K +    K++  G  +     DLLF+ P  + DR     I+E+      +
Sbjct: 8   PVTQLKGVGSKVA---EKLVKLGLQS---VQDLLFHLPHRYEDRTRIYPIAELMPHLHTS 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +   S  Q  ++R   + ++DGTG ITL FF+      KN    G +I   G+++ 
Sbjct: 62  VEGEVMS-SDVQFGRKRMLIVRISDGTGTITLRFFHFSAAQ-KNSLENGTRIRCFGEVRA 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPV--LP 186
            K  + ++HP Y    S D N  L E+   VY    G+     + +  +AL+ L    L 
Sbjct: 120 GKYGLEIMHPEYKT-ISADSNAQLAESLTPVYPSTEGVKQITLRNLTEQALTLLDKGGLA 178

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E + +D+ Q++    + EA +++H P          E   PA++RLA +ELLA  +++L 
Sbjct: 179 ELLPEDVYQQQV--GLIEALHLVHRPPPDVTLALLEEGKHPAQQRLALEELLAHHLSVLK 236

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+Q + + G  I     + +++L ++PF  T +Q+  I DI  DM +   M+R++QGDV
Sbjct: 237 VRQQSQLQKGFAITPSEPLLKQLLDSLPFDLTGAQQRVINDIQHDMQRPTPMMRLVQGDV 296

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A  +A+ AG Q V+MAP  +LA+QH    + +     I V  + G +   
Sbjct: 297 GSGKTLVAAMAALSAISAGYQVVMMAPTELLAEQHMNNFQGWFAPLGIEVGWLAGKLKGK 356

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL----TQKA 418
            R + LE +A G+  +++GTHA+FQ+++QY  L LVIVDEQHRFGV QRL L     Q+ 
Sbjct: 357 ARNETLENLASGKLQLLVGTHAVFQETVQYQSLALVIVDEQHRFGVHQRLALREKGVQQG 416

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV- 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR+PI TV++P  R  EV+ER+++ 
Sbjct: 417 AFPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRRPITTVVLPETRRIEVVERVRLA 476

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            + +G++ YW+C  IEE +    ++  E   +L        + ++HGR+   +K+ +M  
Sbjct: 477 TVEQGRQTYWVCTLIEESEVLQSQAAEETAIALATALPELKVGLVHGRLKADEKQRLMQQ 536

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L+Y
Sbjct: 537 FKDGEMDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVESHCVLMY 596

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             PLSK +  RL+VL+ + DGF IA++DL+ R  GE+LG KQ+G+    IA
Sbjct: 597 QSPLSKTAAKRLAVLRESHDGFYIAQQDLEIRGPGELLGTKQTGLADLRIA 647


>gi|92115360|ref|YP_575288.1| ATP-dependent DNA helicase RecG [Chromohalobacter salexigens DSM
           3043]
 gi|91798450|gb|ABE60589.1| ATP-dependent DNA helicase RecG [Chromohalobacter salexigens DSM
           3043]
          Length = 697

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 257/683 (37%), Positives = 382/683 (55%), Gaps = 26/683 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+    GVG+  +  L+++            D+LF+ P  + DR     I  +    
Sbjct: 8   LDAPVGELSGVGEALTAKLARL------GIVSIADMLFHLPLRYQDRTRITPIGTLRAGT 61

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              + G I+     +  +RR   + L DG+G ++L FF+      +  F  G ++   G+
Sbjct: 62  EAVVEGEIAAADIVK-GRRRSLLVRLKDGSGILSLRFFHFSPAQ-QQQFVRGMRVRAFGE 119

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIE---AVYSLPTGLSVDLFKKIIVEALSRL--- 182
            +     + + HP Y     +D   P+ E    +Y    GL+    + ++ +AL RL   
Sbjct: 120 ARAGATGLEIYHPEYRLLRQEDA--PVEEHLTPIYPTTEGLAQPRLRGLVQQALKRLDDD 177

Query: 183 -PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQ 237
              LP+WI   L Q+   P + E+   +H P      A+  E   PA+ RLA +ELLA Q
Sbjct: 178 DAGLPDWIPDSLRQRFRLPGLVESLRYLHEPPPDAPVAQLAEGKHPAQRRLALEELLAHQ 237

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           ++L  +R + + +    +     +  + L  +PFS T +Q   + +I  D+ +   MLR+
Sbjct: 238 LSLRQVRLRIQTDSAPSLGGGRGLQARFLTQLPFSLTGAQRRVLDEIGHDLERAVPMLRL 297

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA +A  AA+  G QA IMAP  ILA+QHY     +     I V  ++G
Sbjct: 298 VQGDVGSGKTVVAAMAALAAIAGGCQAAIMAPTEILAEQHYRNFSDWFAPLGIEVGWLSG 357

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +    R      IA G+  + +GTHALFQD +++++L L I+DEQHRFGV QRL L QK
Sbjct: 358 KLKGKARLDTKAAIADGRVQVAVGTHALFQDDVRFHRLGLAIIDEQHRFGVHQRLALRQK 417

Query: 418 ATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             A    PH L+MTATPIPRTL +++  D+D+S I E P GR P++TV +P  R  EV+E
Sbjct: 418 GEAGGLTPHQLIMTATPIPRTLAMSAYADLDLSMIDELPPGRTPVQTVAVPDERRPEVVE 477

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           R++   +EG +AYW+C  IEE +    ++       L E     ++ ++HGRM   +K  
Sbjct: 478 RIQRACAEGHQAYWVCTLIEESEALTCQAAEATHAHLGEALPDLAVGLVHGRMKAGEKAE 537

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM +F +G   LL+ATTVIEVG+DV +AS++IIEN E  GL+QLHQLRGRVGRG   S C
Sbjct: 538 VMAAFTSGELDLLVATTVIEVGVDVPNASLMIIENPERLGLSQLHQLRGRVGRGATESFC 597

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLYHPPLS +S  RL V+++T DGF IAE+DL+ R  GE+LG +Q+G+ +  IA  E  
Sbjct: 598 VLLYHPPLSHHSRERLGVMRDTTDGFRIAEKDLELRGPGEVLGTRQTGLAQMKIADLERD 657

Query: 653 DSLLEIARKDAKHILTQDPDLTS 675
             LL+     A+ +L + P+  +
Sbjct: 658 RDLLDTISPLARALLDEAPEAAT 680


>gi|157803559|ref|YP_001492108.1| ATP-dependent DNA helicase RecG [Rickettsia canadensis str. McKiel]
 gi|157784822|gb|ABV73323.1| ATP-dependent DNA helicase RecG [Rickettsia canadensis str. McKiel]
          Length = 705

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 269/652 (41%), Positives = 375/652 (57%), Gaps = 41/652 (6%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLFY P S+ ++   P ++++ +  I+  T  + +  S      +P KI   + TG + 
Sbjct: 37  DLLFYIPVSYQNKTLSPNLTKVRDGEIIQ-TEIVIESISLPKNSNQPLKITARNDTGSLL 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159
           L+FF+R    + N    G    ++GK++   + + + HP +I      VN  L   IE +
Sbjct: 96  LVFFHRPPPFIFNKLKVGTSHIISGKVQFFDHHLQISHPEFI------VNPTLAKEIEPI 149

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP---RKAK 216
           YSL   LS       I++A+       + +E D   K    SI +   ++H+    RK++
Sbjct: 150 YSLTYLLSNKQLYSYIIKAMDIFERKCKGLE-DKEVKDYLDSILQNLKVLHSLCHLRKSR 208

Query: 217 DFE--------WT------SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
           + E        W       + A++ LA  EL+A QI+L  +R Q  +  G   N+  K A
Sbjct: 209 NSEKMDIMVKSWDDTRVCLNNAKKHLAAKELIANQISLFNVRTQISRRQG---NIFPKAA 265

Query: 263 Q---KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                IL  + F  T  Q+  I++I  D S K  M+R+LQGDVGSGKTLVAL+ M     
Sbjct: 266 GPQVNILNELGFELTPYQKQVIEEIELDQSDKVEMMRLLQGDVGSGKTLVALLTMVNVAV 325

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           AG QA +MAP  +LA QHYEF  K  +NT I V ++TG +    R+  + ++ +G+  I+
Sbjct: 326 AGFQATLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGLARKNIMIQLENGEIEIL 385

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALFQ+ + + KL  +++DEQHRFGVQQRL L  K   P VL+MTATPIPR+L LT 
Sbjct: 386 LGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPIPRSLALTM 445

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
            GD+ ISK+  KP  R PI T I+  N+I+ VIE +   L  G++ YWICP IE  K   
Sbjct: 446 FGDMTISKLQGKPKNRLPIATNIMSTNKIEHVIEAINKKLILGERIYWICPLIERGKQEE 505

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              +S    V+ RFNS+   +     IIHG+M +  K+ +M  FK G  K+L+ATTVIEV
Sbjct: 506 QEDDSVLMDVMNRFNSIENIYQGYTGIIHGKMKNEQKDIIMKQFKEGEIKILVATTVIEV 565

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTRLSVLK 612
           GIDV +A++IIIENAE FGLAQLHQLRGRVGRG   S CILLY+P  L + +  R  +++
Sbjct: 566 GIDVPEATLIIIENAEQFGLAQLHQLRGRVGRGNLQSYCILLYNPKRLGQVARGRFEIMQ 625

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            T DGF IAE+DLK R  GEILG+KQSG  +F  A    H  LL  A K A+
Sbjct: 626 QTNDGFYIAEQDLKLRGSGEILGVKQSGEIEFFFADLAEHYDLLLKANKFAE 677


>gi|307251432|ref|ZP_07533346.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306856516|gb|EFM88658.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 693

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 267/678 (39%), Positives = 385/678 (56%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I    N       DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTALSGVGAAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y I  N+Q +     +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALA---LLDKIK 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
             +LL  +  P   S+  A  ++H P  +   E       PA++RL ++ELLA  +A+  
Sbjct: 179 VGELLPDEYNPHKYSLKGALQLLHRPPPSVSAEQLEKGEHPAQKRLIFEELLAHNLAMQQ 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R    +    P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDV
Sbjct: 239 VRVGVNQLTATPLRYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   LE I +G+  +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+   
Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478

Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+ +M  
Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAE 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++
Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
            + +  AK I+ Q+P L 
Sbjct: 659 PLVQNYAKQIIQQNPPLA 676


>gi|46143481|ref|ZP_00135158.2| COG1200: RecG-like helicase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126209289|ref|YP_001054514.1| ATP-dependent DNA helicase RecG [Actinobacillus pleuropneumoniae
           L20]
 gi|126098081|gb|ABN74909.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 693

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 267/678 (39%), Positives = 385/678 (56%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I    N       DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTALSGVGAAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y I  N+Q +     +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSATEGLKQNSLRKLTEQALA---LLDKIK 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
             +LL  +  P   S+  A  ++H P  +   E       PA++RL ++ELLA  +A+  
Sbjct: 179 VGELLPDEYNPHKYSLKGALQLLHRPPPSVSAEQLEKGEHPAQKRLIFEELLAHNLAMQQ 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R    +    P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDV
Sbjct: 239 VRVGVNQLTATPLRYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   LE I +G+  +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+   
Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478

Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+ +M  
Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAE 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++
Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
            + +  AK I+ Q+P L 
Sbjct: 659 PLVQNYAKQIIQQNPPLA 676


>gi|37678423|ref|NP_933032.1| RecG-like helicase [Vibrio vulnificus YJ016]
 gi|37197163|dbj|BAC93003.1| RecG-like helicase [Vibrio vulnificus YJ016]
          Length = 693

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 262/651 (40%), Positives = 387/651 (59%), Gaps = 26/651 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L KI        +   DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLEKI------GLSSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G++ Q  +    KR+   + L+DG G ITL FF   T  +KN F EG+ +   G+IK+
Sbjct: 64  VQGHVMQVDTL-FGKRKMLTVKLSDGNGTITLRFF-NFTAAMKNNFAEGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + +VHP Y F       DV   L   VY    GL     + +  +AL+ L    + 
Sbjct: 122 GNMGLEIVHPDYKFFAPTQKPDVEQSLT-PVYPTTDGLRQITLRNLTDQALALLDKAAVQ 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIALLL 242
           E +   L  ++   ++ +A +IIH P    D E       PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPAGLYDQQL--TMGQALHIIHRPSPEIDLELFDEGKHPAQVRLIMEELLAQNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R + ++++ +P+    ++ Q++L  +PFSPT +Q   +++I +DM + + M+R++QGDV
Sbjct: 239 VRSKGQQDVALPLPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDMQKAHPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +   
Sbjct: 299 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIPVGWLAGKLKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            +   L RIA G+A +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K     
Sbjct: 359 AKEAELARIASGEAKMVVGTHALFQEHVVFDHLALVIIDEQHRFGVHQRLELREKGAKQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + ++++ER++  
Sbjct: 419 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERIRHA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM +
Sbjct: 479 CLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVRIGLVHGRMKPAEKQAVMQA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           H PLSK +  RLSVL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA
Sbjct: 599 HAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIA 649


>gi|188532204|ref|YP_001906001.1| ATP-dependent DNA helicase RecG [Erwinia tasmaniensis Et1/99]
 gi|188027246|emb|CAO95085.1| ATP-dependent DNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 693

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/675 (37%), Positives = 382/675 (56%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   +  L+++            DLL + P  + DR     I+++      T
Sbjct: 10  PLNTLTGVGASQAAKLARL------GLVTVQDLLLHLPMRYEDRTQLYAINDLLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  HS     +RR     + DGTG +TL FF     M KN    GRK+T  G+IK+
Sbjct: 64  VEGEVL-HSDISFGRRRMLTCQIGDGTGTLTLRFFNFNAGM-KNSLAVGRKVTAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
            +    ++HP Y       V      +  VYS   G+     + +  +ALS L    + E
Sbjct: 122 GQRGAEIIHPEYKVQGEHSVTELQETLTPVYSTTEGVRQATLRNLTEQALSLLDTSAIAE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNP---RKAKDFE-WTSPARERLAYDELLAGQIALLLM 243
            +  +L   +   S+++A   +H P       D +  T PA+ RL  +ELLA  +++L +
Sbjct: 182 LLPPEL--SRGLISLSDALRTLHRPPPDMALADLDSGTHPAQRRLIMEELLAHNLSMLAV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   ++   +P++   +++ ++L  +PF PT +Q+  +++I +D++    M+R++QGDVG
Sbjct: 240 RAGAQRYHALPMSPRHQLSDRLLAALPFRPTSAQQRVVREIEEDLAHDYPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +     +  G Q  +MAP  +LA+QH    +++     + V  + G      
Sbjct: 300 SGKTLVAALTALNVIAWGKQVALMAPTELLAEQHANNFRQWFAPLGLEVGWLAGKQKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RQAQQEAIASGQVSMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGEEQGF 419

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I R+K   
Sbjct: 420 HPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRADIITRVKDAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            SEG++AYW+C  IEE +    ++    +  L       +I ++HGRM   +K++VM +F
Sbjct: 480 GSEGRQAYWVCTLIEESELLEAQAAQATWEELKLALPELTIGLVHGRMKPAEKQAVMQAF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LLIATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 540 KQGEIHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +L+ 
Sbjct: 600 SPLSKTAQKRLQVLRDSNDGFVIAQCDLEIRGPGELLGTRQTGNAEFRVADLLRDQALIP 659

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI    P+
Sbjct: 660 EVQRVARHIHQHYPE 674


>gi|146309411|ref|YP_001189876.1| ATP-dependent DNA helicase RecG [Pseudomonas mendocina ymp]
 gi|145577612|gb|ABP87144.1| ATP-dependent DNA helicase RecG [Pseudomonas mendocina ymp]
          Length = 691

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/673 (38%), Positives = 389/673 (57%), Gaps = 24/673 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG   +  L+K+   G  N     D+LF+ P  + DR     I  +   +   +
Sbjct: 9   VTALKGVGAALAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRITPIGALRPGQDAVV 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G ++  +   + +RR   + L DG+G ++L FF+  ++  K     G  +   G+++  
Sbjct: 63  EGIVA-GADVVMGRRRSLLVRLQDGSGTLSLRFFH-FSQAQKEGLKRGTALRCYGEVRPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
              + + HP Y    S D   P+   +  +Y    GL+    +++  +AL+RL    LP+
Sbjct: 121 ATGLEIYHPEY-RAQSGDEPAPVEQSLTPIYPTTEGLTQQRLRQLSQQALARLGPRSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLLM 243
           W+  +L +      + EA   +H P    D E  +  R     RLA++ELL  Q++L  +
Sbjct: 180 WLPDELARDYRLAPLDEAIRYLHRPPPDADLEELAEGRHWAQHRLAFEELLTHQLSLQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+Q + +    +    K+ Q+ L N+ F+PT +Q+    +I  D++Q   MLR++QGDVG
Sbjct: 240 REQVRAQQAPALPPAQKLPQQYLANLGFAPTGAQQRVGAEIAYDLAQSEPMLRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT+VA +A   A+EAG Q  +MAP  ILA+QH+    K+     + V  + G +    
Sbjct: 300 AGKTVVAALAALQALEAGYQVALMAPTEILAEQHFLNFSKWLAPLGLDVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R  ALE+IA G   +++GTHALFQD +++ +L LVI+DEQHRFGVQQRL L QK      
Sbjct: 360 RASALEQIAAG-CPMVVGTHALFQDEVKFRRLALVIIDEQHRFGVQQRLALRQKGIDGRL 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ T++I  +R  EVIER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRIEVIERVRNAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            +G++AYW+C  IEE +E   ++    F  L        + +IHGRM   +K +VMD FK
Sbjct: 479 QQGRQAYWVCTLIEESEELTCQAAETSFEELSAALGELRVGLIHGRMKPAEKAAVMDEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH 
Sbjct: 539 QGHLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHA 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL++++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQLGRERLAIMRETTDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDP 671
            R  A+ +L   P
Sbjct: 659 VRDAAQALLEHWP 671


>gi|166368534|ref|YP_001660807.1| ATP-dependent DNA helicase RecG [Microcystis aeruginosa NIES-843]
 gi|166090907|dbj|BAG05615.1| DNA recombinase [Microcystis aeruginosa NIES-843]
          Length = 822

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/684 (37%), Positives = 404/684 (59%), Gaps = 29/684 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL     VG++ +  L K+      N  +  DLL+Y+P   ID   +  I+ ++E   VT
Sbjct: 128 PLKYLAEVGERKAGLLEKL------NLHKVEDLLYYYPRDHIDYSRQVNIANLTEGETVT 181

Query: 72  ITGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK------ 122
           + G + + + F   K      +++LL D TG+I L  FY  T      + EG+K      
Sbjct: 182 LVGNVKRCNCFTSPKNTKLAIFELLLQDRTGQIKLNRFYAGTRYTNRAWQEGQKKLYLVG 241

Query: 123 --ITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFKKII 175
             + V+G +K  K  + + +P +   +S     + +    I  VY L  G+  DL +K +
Sbjct: 242 SVVAVSGLVKAGKYGLTLENPEFELLDSSGASIESLKIGRILPVYPLTDGVPADLIRKAV 301

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           V A   +  + + +   L ++     +  A   IH P  A   E  S AR RL +DE   
Sbjct: 302 VAAFGAVEAIKDPLPFGLRKQYGLIDLKTAITNIHFPNNA---EILSQARRRLVFDEFFF 358

Query: 236 GQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
            Q+  L  R+Q+++     I + +G++  +  + IPF  T +Q+  I++IL+D+     M
Sbjct: 359 LQLGFLRRRQQYRQTQKSAIFSAKGQLIDQFNQIIPFQLTNAQKRVIEEILEDLDSSTPM 418

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++QGDVGSGKT+V + A+ AA+++G QA +MAP  +LA+QHY  +  +     + VE+
Sbjct: 419 NRLVQGDVGSGKTIVGVYAILAALQSGYQAALMAPTEVLAEQHYRKLVSWFNLLHLPVEL 478

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+   A RR+   ++  G+  +++GTHAL QD++ + KL LV++DEQHRFGVQQR +L
Sbjct: 479 LTGSTKTAKRREIHAQLETGELPLLVGTHALIQDAVNFRKLGLVVIDEQHRFGVQQRARL 538

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K  +PHVL MTATPIPRTL LT  GD+D+S+I E P GR+PI+T  +  N+     + 
Sbjct: 539 LSKGESPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQPIQTTALNGNQRRAAYDL 598

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKES 532
           ++  +++G++AY I P IEE ++ + R+ VE + +L E      +I ++HGRMS  +KE 
Sbjct: 599 IRREIAQGRQAYVIFPLIEESEKLDVRAAVEEYQNLSEKIFPNFNIGLLHGRMSSAEKEE 658

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           ++ +F++   +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   S C
Sbjct: 659 ILTAFRDNILQIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGSHQSYC 718

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LL     S NS  RL+VL+ ++DGF I+E D++ R  GE+LG +QSG+P F +A     
Sbjct: 719 LLLSGSN-SANSRQRLTVLEQSQDGFFISEMDMRFRGPGEVLGQRQSGLPDFALASLVED 777

Query: 653 DSLLEIARKDAKHILTQDPDLTSV 676
             +L +AR  A+ I+  DP L ++
Sbjct: 778 QEVLVLARDAAEKIMLDDPHLITL 801


>gi|88705445|ref|ZP_01103156.1| ATP-dependent DNA helicase RecG [Congregibacter litoralis KT71]
 gi|88700535|gb|EAQ97643.1| ATP-dependent DNA helicase RecG [Congregibacter litoralis KT71]
          Length = 686

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/667 (38%), Positives = 385/667 (57%), Gaps = 17/667 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L + RGVG K +  L +    G +N     DLLF+ P  + DR     I  + +   V I
Sbjct: 9   LESLRGVGPKMAERLQRY---GISN---VEDLLFHLPLRYQDRTQVTPIGALQDGAEVVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G ++  S     +RR   + L DGTG  TL FF+  ++  KN   +G ++   G +++ 
Sbjct: 63  EGDVALVSVSGGGRRRSLIVKLQDGTGTATLRFFH-FSQAQKNALQQGDRLRCFGTVRRG 121

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192
             +  M+HP Y        N   +  +Y    G+S   ++K+  +ALS L   P   E+ 
Sbjct: 122 AQQAEMIHPEYRRSIHISDNEESLTPIYPSTEGVSQGQWRKLSDQALSVLAKHPP--EEL 179

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           L  +++   ++ A   +H P    D     +   PA+ RLA +EL A Q+++  MR + +
Sbjct: 180 LPVRENDYGLSSALRFLHRPPPEADQQALRDGRHPAQLRLALEELTAHQLSMREMRARSR 239

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +     +     ++Q  L+ +PF PT +Q   +++I  D++ +  MLR++QGDVGSGKT+
Sbjct: 240 ERAAPVLRDSKALSQHFLKALPFEPTAAQLRVMEEITADLATEKPMLRLVQGDVGSGKTV 299

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA  A   A+ +G Q  +MAP  +LA+QH      +     I    + G++    R +AL
Sbjct: 300 VAAAAALIAIASGYQVAVMAPTELLAEQHRRNFAGWFSPLNISQMWLAGSVKGQKREQAL 359

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK---ATAPHVLL 425
             I  G+A ++IGTHALFQD +++  L LVIVDEQHRFGV QRL L++K   A   H L+
Sbjct: 360 AAIESGEASLVIGTHALFQDGVEFAHLGLVIVDEQHRFGVHQRLALSEKTGGAWRAHQLI 419

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL + +  D+D S I E P GR+P+ TV+I   R  E+IER+ +   EG++ 
Sbjct: 420 MTATPIPRTLSMVAYADLDCSIIDELPPGRQPVGTVLIDNQRRQEIIERVAIACREGRQV 479

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           YW+C  IE+      ++    F  L E     ++A++HGRM   +K++VM +FK G  +L
Sbjct: 480 YWVCTLIEDSDTLQAQAAESSFAELAEALDGIAVAMVHGRMKAKEKDAVMSAFKAGHYQL 539

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+ATTVIEVG+DV +A+++IIEN E  GLAQLHQLRGRVGRG   S C+LLY  PL + S
Sbjct: 540 LVATTVIEVGVDVPNATLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYQSPLGQQS 599

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL V++ + DGF IAEEDL+QR  GE+LG +Q+G+ +F +A+   H+ LLE  ++ A+
Sbjct: 600 RARLQVMRESNDGFYIAEEDLRQRGPGEVLGTRQTGLMEFRVARLPEHEHLLEEVQEIAE 659

Query: 665 HILTQDP 671
            +  + P
Sbjct: 660 ALQQEHP 666


>gi|307262320|ref|ZP_07543968.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306867983|gb|EFM99811.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 693

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 268/678 (39%), Positives = 387/678 (57%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I    N       DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTALSGVGAAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQLTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y I  N+Q +     +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALA---LLDKIK 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLL 242
             +LL  +  P   S+ EA  ++H P     A+  E    PA++RL ++ELLA  +A+  
Sbjct: 179 VGELLPDEYNPHKYSLKEALQLLHRPPPDISAEQLEKGDHPAQKRLIFEELLAHNLAMQQ 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R    +    P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDV
Sbjct: 239 VRVGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   LE I +G+  +IIGTHALFQ+ ++++ L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARTAQLEAIKNGEVQMIIGTHALFQERVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+   
Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478

Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+++M  
Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQAIMAE 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++
Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
            + +  AK I+ Q+P L 
Sbjct: 659 PLVQNYAKQIIQQNPPLA 676


>gi|165977264|ref|YP_001652857.1| ATP-dependent DNA helicase RecG [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165877365|gb|ABY70413.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 693

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 267/678 (39%), Positives = 385/678 (56%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I    N       DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTALSGVGAAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y I  N+Q +     +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALA---LLDKIK 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
             +LL  +  P   S+  A  ++H P  +   E       PA++RL ++ELLA  +A+  
Sbjct: 179 VGELLPDEYNPHKYSLKGALQLLHRPPPSVSAEQLEKGEHPAQKRLIFEELLAHNLAMQQ 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R    +    P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDV
Sbjct: 239 VRVGVNQLTATPLRYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   LE I +G+  +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+   
Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478

Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+ +M  
Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAE 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++
Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
            + +  AK I+ Q+P L 
Sbjct: 659 PLVQNYAKQIIQQNPPLA 676


>gi|83648946|ref|YP_437381.1| ATP-dependent DNA helicase RecG [Hahella chejuensis KCTC 2396]
 gi|83636989|gb|ABC32956.1| ATP-dependent DNA helicase RecG [Hahella chejuensis KCTC 2396]
          Length = 688

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/685 (37%), Positives = 397/685 (57%), Gaps = 41/685 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+  +GVG   +  L+K+            DLLF+ P  + DR    +++ +++ R+  
Sbjct: 6   PLTELKGVGPALAEKLAKL------GLHTVQDLLFHLPLRYEDR---TRVTPVAQVRV-- 54

Query: 72  ITGYISQ------HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
             G  +Q       S  +L ++R   + + D +GEI L F+Y  T   KN F  GRK   
Sbjct: 55  --GMPAQVEATVVDSRVELGRKRSLLVRVRDDSGEIGLRFYY-FTAQQKNRFSPGRKFLC 111

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-----IEAVYSLPTGLSVDLFKKIIVEALS 180
            G+ +  ++ + M HP        D   P      +  +Y    GL     + +  +AL+
Sbjct: 112 YGEARLGRSGLEMYHPET---TQVDELKPAEMEQRLTPIYPTTEGLMQKRLRDLCQQALT 168

Query: 181 RLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELL 234
            +   P  +W+ ++L      P +  A + +H+P    +     E   P ++RL  +ELL
Sbjct: 169 LMRRYPIKDWLPQELRSHYQMPELNAALDYLHHPPVGANVTALAESRHPNQQRLVAEELL 228

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A  ++LL +R++ + +   P    G + Q+ +  +PF+ T +Q+  I +I QD+     M
Sbjct: 229 AHHLSLLQLRQEVQSQPA-PALRAGVLQQRFIEQLPFALTGAQKRVIGEIEQDVRAMVPM 287

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           LR++QGDVGSGKT+VA  +   A+EAG QA +MAP  IL++QHY+ + ++ +   + V  
Sbjct: 288 LRLVQGDVGSGKTVVAAASALCAIEAGHQAALMAPTEILSEQHYKTLSQWLEPLGVSVVW 347

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           + G +  + R+K L+ I+ G A + IGTHALFQD +++ +L L I+DEQHRFGV QRL L
Sbjct: 348 LNGKLKASERQKVLDAISSGAAQLAIGTHALFQDQVEFARLGLAIIDEQHRFGVHQRLSL 407

Query: 415 TQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            +K      APH L+MTATPIPRTL +++  D+D S I E P GR P+ T +IP  + D+
Sbjct: 408 REKGARSGQAPHQLIMTATPIPRTLAMSAYADLDTSVIDELPPGRTPVVTAVIPDIKRDD 467

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDID 529
           V+ER++ V  EG++AYW+C  IEE +    ++      +L E      + ++HGRM   +
Sbjct: 468 VVERVRKVCLEGRQAYWVCTLIEESEVLQCQAAEATAANLAEALPDLRVGLVHGRMKAAE 527

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K +VMD FK+    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   
Sbjct: 528 KTAVMDDFKHNRLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSHE 587

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+YHPPLS     R+ V++++ DGF+IAE+DL+ R  GE+LG +Q+G+ +F IA  
Sbjct: 588 SYCVLMYHPPLSLAGKARMQVMRDSNDGFVIAEKDLEIRGPGEVLGTRQTGLIQFRIADL 647

Query: 650 ELHDSLLEIARKDAKHILTQDPDLT 674
           +     L + ++ A  ++ Q PD+T
Sbjct: 648 QRDRQWLPVVKEMALSVIDQ-PDVT 671


>gi|330505643|ref|YP_004382512.1| ATP-dependent DNA helicase RecG [Pseudomonas mendocina NK-01]
 gi|328919929|gb|AEB60760.1| ATP-dependent DNA helicase RecG [Pseudomonas mendocina NK-01]
          Length = 691

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/674 (37%), Positives = 392/674 (58%), Gaps = 24/674 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L+K+   G  N     D+LF+ P  + DR     I  +   +   
Sbjct: 8   PVTALKGVGAALAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRITPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G ++  +   + +RR   + L DG+G ++L FF+  ++  K     G  +   G+++ 
Sbjct: 62  VEGIVA-GADVVMGRRRSLLVRLQDGSGTLSLRFFH-FSQAQKEGLKRGTALRCYGEVRP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
               + + HP Y    S D   P+   +  +Y    GL+    +++  +AL+RL    LP
Sbjct: 120 GATGLEIYHPEY-RAQSGDEPAPVEQSLTPIYPTTEGLTQQRLRQLSQQALARLGPRSLP 178

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLL 242
           +W+  +L +      + EA   +H P    D E  +  R     RLA++ELL  Q++L  
Sbjct: 179 DWLPDELARDYRLAPLDEAIRYLHRPPPDADVEELAEGRHWAQHRLAFEELLTHQLSLQR 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+Q + +    +    K+ Q+ L N+ F+PT +Q+    +I  D++Q   MLR++QGDV
Sbjct: 239 LREQVRAQQAPALPPAKKLPQQYLANLGFAPTGAQQRVGAEIAYDLAQSEPMLRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+VA +A   A+EAG Q  +MAP  ILA+QH+    K+     + V  + G +   
Sbjct: 299 GAGKTVVAALAALQALEAGYQVALMAPTEILAEQHFLNFSKWLAPLGLEVAWLAGKLKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419
            R  AL++IA G   +++GTHALFQD +++ +L LVI+DEQHRFGVQQRL L QK     
Sbjct: 359 ARAAALDQIAAG-CPMVVGTHALFQDEVKFKRLALVIIDEQHRFGVQQRLALRQKGIDGR 417

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            +PH L+MTATPIPRTL +++  D+D S + E P GR P+ T++I  +R  EV+ER++  
Sbjct: 418 LSPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRIEVVERVRNA 477

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             +G++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K +VM+ F
Sbjct: 478 CQQGRQAYWVCTLIEESEELTCQAAETSYEELSAALGELRVGLIHGRMKPAEKAAVMEEF 537

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G+ +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 538 KQGSLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYH 597

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS+    RL++++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL 
Sbjct: 598 APLSQLGRERLAIMRETTDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 657

Query: 658 IARKDAKHILTQDP 671
             R  A+ +L   P
Sbjct: 658 AVRDAAQALLEHWP 671


>gi|330812612|ref|YP_004357074.1| ATP-dependent DNA helicase, recG [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380720|gb|AEA72070.1| ATP-dependent DNA helicase, recG [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 691

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 262/681 (38%), Positives = 392/681 (57%), Gaps = 30/681 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++T +GVG+  +  L+K+   G  N     D+LF+ P  + DR     I  +   +   
Sbjct: 8   PVTTLKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGHLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +S  +   + +RR   + L DGTG ++L  FY  +   K     G ++   G+ + 
Sbjct: 62  IEGTVSG-ADVVMGRRRSLVVRLQDGTGGLSL-RFYHFSNAQKEGLKRGTRVRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
             + + + HP Y    + D   P+ E    VY L  GL+    +++  + L+ L    LP
Sbjct: 120 GASGLEIYHPEY-RAITGDEPPPVDETLTPVYPLTEGLTQQRLRQLCQQTLTLLGPSSLP 178

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIA 239
           +W+  +L +      +A+A   +H+P    D +       W   A+ RLA++ELL  Q++
Sbjct: 179 DWLPTELARDYHLAPLADAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLS 235

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
              +R+  +      +     +  + L N+ F+PT +Q+    +I  D+SQ   MLR++Q
Sbjct: 236 QQRLRESLRSLRAPAMPKARDLPARYLANLGFTPTGAQQRVGNEIAYDLSQPEPMLRLIQ 295

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VA +A   A+EAG Q  +MAP  ILA+QH+   +++ +   I V  + G +
Sbjct: 296 GDVGAGKTVVAALAALQALEAGYQVALMAPTEILAEQHFITFQRWLEPLGIEVAWLAGKL 355

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
              +R  AL +IA G A +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L QK  
Sbjct: 356 KGKNRTTALAQIAEG-APMVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRQKGV 414

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++   R  EVIER+
Sbjct: 415 GGRMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERV 474

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           +   +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K +VM
Sbjct: 475 RSACAEGRQAYWVCTLIEESEELTCQAAETTYEDLTAALGELKVGLIHGRMKPAEKAAVM 534

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L
Sbjct: 535 AEFKAGALQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVL 594

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LYHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       
Sbjct: 595 LYHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDAD 654

Query: 655 LLEIARKDAKHILTQDPDLTS 675
           LL   R  A+ +L + PD  S
Sbjct: 655 LLPAVRDAAQALLERWPDHVS 675


>gi|257454372|ref|ZP_05619635.1| ATP-dependent DNA helicase RecG [Enhydrobacter aerosaccus SK60]
 gi|257448275|gb|EEV23255.1| ATP-dependent DNA helicase RecG [Enhydrobacter aerosaccus SK60]
          Length = 717

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 258/710 (36%), Positives = 395/710 (55%), Gaps = 58/710 (8%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           ++P   N    P++   GVG K +  L ++         R  DLL + P  + DR     
Sbjct: 3   LKPDIFN---LPVTALAGVGSKIAEQLDQL------GIERVFDLLLHLPRDYEDRSRLVN 53

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF--YRKTEMLKNVFF 118
           + ++ + +   + G + +  +    K+    + L D T + TL FF  YR    L +   
Sbjct: 54  MCDVVDGQSALLQGTVVRVDN----KKMGLSVTLQDRTAQTTLRFFKVYRG---LTDTMA 106

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
            G  + V G+I   K    + HP Y I    Q +    +  VY     L  +  + +I  
Sbjct: 107 VGNTLRVFGEISISKYGTQISHPEYEIITGHQPLTNTGLIPVYPTVKNLHQNKLRSLIRL 166

Query: 178 ALSRL----PVLP-----EW--IEKDLLQKKSFP------------SIAEAFNIIHNPRK 214
           AL  +    PV+      +W  ++  L Q+  FP            S+ EA + IH P  
Sbjct: 167 ALQTVKQANPVMATISDADWQIVQSALSQQ--FPLLAGSHNPFGEFSLLEAISFIHQPPI 224

Query: 215 AKDFE-----------WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263
             D              + P  +RL  +E+LA Q++LL  ++Q  +      +    +A 
Sbjct: 225 YTDLNKQILVLEALKNRSHPTCQRLIIEEMLAHQLSLLYRKQQLYQHKAPRCDATSALAN 284

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++L N+PF+PT +Q   + +I++D+S    MLR++QGDVG+GKTLVA +A   A+++G Q
Sbjct: 285 RLLANLPFTPTHAQNRVVAEIVKDLSTSVPMLRLVQGDVGAGKTLVAALAACYALDSGWQ 344

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             +MAP  ILA+QH    K + +   I V  + G      R KAL+++   +  I++GTH
Sbjct: 345 VAVMAPTEILAEQHLNNFKNWFEPLGIGVGWLAGKQTAKAREKALQQVQDNEVQIVVGTH 404

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSL 440
           ALFQ+ + + KL LVI+DEQHRFGV+QR+ L  K    T PH L+MTATPIPRTL +++ 
Sbjct: 405 ALFQEHVNFAKLGLVIIDEQHRFGVEQRMALVDKGLAHTTPHQLIMTATPIPRTLAMSAF 464

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           GD+D S I E P  R PI TV I  +R DEVIER+ V   +GK+AYW+CP +EE    + 
Sbjct: 465 GDMDTSIIDELPPNRTPITTVTISRDRRDEVIERIAVNCEQGKQAYWVCPLVEESTMLDA 524

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           ++    +  L++    +I ++HG+M   DK++VM  FK G   LL+ATTVIEVG+DV +A
Sbjct: 525 QAAEATYADLNDRLNLNIGLVHGKMKPNDKQAVMADFKAGKTALLVATTVIEVGVDVPNA 584

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           S+++IENAE  GL+QLHQLRGRVGRG + S C+LLY  PLS+    RL+VL+++ DGF+I
Sbjct: 585 SLMVIENAERLGLSQLHQLRGRVGRGTQKSFCVLLYQTPLSETGIERLNVLRDSNDGFVI 644

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           A++DL+ R  GE+LG +Q+G   + ++     +SLL +A+  AK+++  +
Sbjct: 645 AQKDLELRGAGELLGKRQTGFDSYYVSDLARDESLLIVAQAIAKYLIADE 694


>gi|229524689|ref|ZP_04414094.1| ATP-dependent DNA helicase RecG [Vibrio cholerae bv. albensis
           VL426]
 gi|229338270|gb|EEO03287.1| ATP-dependent DNA helicase RecG [Vibrio cholerae bv. albensis
           VL426]
          Length = 692

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 264/675 (39%), Positives = 392/675 (58%), Gaps = 26/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFVEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIF---HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + ++HP Y F     + DV  P +  VY    GL     + +  +AL+ L    + 
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L 
Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+ + + M+R++QGDV
Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +   
Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGK 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K     
Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++  
Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +
Sbjct: 478 CLNEGKQAYWVCTLIDESEVLETQAAAETAEELQRKLPEVKIGLVHGRMKQAEKQAVMQA 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+
Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657

Query: 657 EIARKDAKHILTQDP 671
              ++ A+HI  + P
Sbjct: 658 PQVQRIARHIHERYP 672


>gi|323497035|ref|ZP_08102058.1| ATP-dependent DNA helicase RecG [Vibrio sinaloensis DSM 21326]
 gi|323317879|gb|EGA70867.1| ATP-dependent DNA helicase RecG [Vibrio sinaloensis DSM 21326]
          Length = 692

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 265/677 (39%), Positives = 402/677 (59%), Gaps = 28/677 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  G+G K +  L+K+      N  +  DLLF+ P  + DR     I+++       
Sbjct: 9   PLTSLTGIGAKVAEKLAKV----GLNSVQ--DLLFHLPLRYEDRTRIYPIAKLHAGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + L+DG G ITL FF   T  +KN F EG+ +   G++K+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKLSDGNGTITLRFF-NFTAAMKNNFAEGKTVHAYGEVKR 120

Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
               + +VHP Y F+      DV   L   VY    GL     + +  +AL+   +L + 
Sbjct: 121 GGYGLEIVHPDYKFYAPNQKADVEQTLT-PVYPTTDGLRQITLRNLTDQALA---LLDKA 176

Query: 189 IEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241
             ++LL    +    ++A+A + IH P  + D     E  +PA+ RL  +ELLA  +++L
Sbjct: 177 AVQELLPSGLYDHQLTLAQALHTIHRPPPSLDVDEFDEGKNPAQIRLIMEELLAQNLSML 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R + +++  +P+    ++ Q++L  +PFSPTK+Q   +K+I  D+ + + M+R++QGD
Sbjct: 237 AVRSKGQQDTALPLKECHQLKQQLLGQLPFSPTKAQARVVKEIEDDLLKPHPMMRLVQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +  
Sbjct: 297 VGSGKTLVAALAAVRALEQGYQVALMAPTELLAEQHAINFANWFEPMDIKVGWLAGKLKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             +   L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K    
Sbjct: 357 KAKDAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQ 416

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D++IER++ 
Sbjct: 417 GAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIIERVRH 476

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM 
Sbjct: 477 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEDLQRKLPEVKIGLVHGRMKPAEKQAVMQ 536

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+   +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 537 DFKDNKLQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 596

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YH PLSK +  RL+VL+ + DGF+IA+ DL+ R  GE+LG KQ+GM  F IA       L
Sbjct: 597 YHSPLSKTAQKRLAVLRESNDGFVIAQRDLEIRGPGELLGTKQTGMADFKIADLVRDQRL 656

Query: 656 LEIARKDAKHILTQDPD 672
           +   ++ A++I    PD
Sbjct: 657 IPEVQRIARYIHDNYPD 673


>gi|254228569|ref|ZP_04921994.1| ATP-dependent DNA helicase RecG [Vibrio sp. Ex25]
 gi|151938951|gb|EDN57784.1| ATP-dependent DNA helicase RecG [Vibrio sp. Ex25]
          Length = 693

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 259/671 (38%), Positives = 395/671 (58%), Gaps = 28/671 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F +G+ +   G+IK+
Sbjct: 64  VQGKVMAVDTI-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFTQGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
               + +VHP Y F+ S+   DV   L   VY    GL     + +  +AL+   +L + 
Sbjct: 122 GGVGLEIVHPDYKFYVSEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALA---LLDKT 177

Query: 189 IEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241
             ++LL    +    ++++A + IH P    +     E   PA+ RL  +ELLA  +++L
Sbjct: 178 AVQELLPAGLYNHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R + +K+  +P+    K+  ++L  +PFSPT +Q   +++I  D+ + + M+R++QGD
Sbjct: 238 AVRSKGQKDSALPLGPCNKLKMQLLAQLPFSPTNAQTRVVQEIETDLEKPHPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +  
Sbjct: 298 VGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFETMDIQVGWLAGKLKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             +   L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K    
Sbjct: 358 KAKEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++ 
Sbjct: 418 GAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM 
Sbjct: 478 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 DFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YH PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L
Sbjct: 598 YHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRL 657

Query: 656 LEIARKDAKHI 666
           +   ++ A+HI
Sbjct: 658 IPEVQRIARHI 668


>gi|269959395|ref|ZP_06173778.1| ATP-dependent DNA helicase RecG [Vibrio harveyi 1DA3]
 gi|269835832|gb|EEZ89908.1| ATP-dependent DNA helicase RecG [Vibrio harveyi 1DA3]
          Length = 693

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/652 (39%), Positives = 388/652 (59%), Gaps = 28/652 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G + +  ++F   KR+   + ++DG G ITL FF   T  +KN F  G+ +   G+IK
Sbjct: 64  IQGKVMAVDTTFG--KRKMLTVKISDGNGTITLRFF-NFTAAMKNNFSNGKLVHAYGEIK 120

Query: 131 KLKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVL 185
           +    + +VHP Y F+ S+   DV   L   VY    GL     + +  +ALS L    +
Sbjct: 121 RGGMGLEIVHPDYKFYVSEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALSLLDKAAV 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241
            E +   L   +   ++++A + IH P    +     E   PA+ RL  +ELLA  +++L
Sbjct: 180 QELLPSGLYNHQI--TMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R + ++++ +P+     + +++L  +PFSPT +Q   +K+I  D+ + + M+R++QGD
Sbjct: 238 AVRSKGQQDVALPLASRDSLKKQLLAQLPFSPTNAQARVVKEIEADLEKNHPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +  
Sbjct: 298 VGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIQVGWLAGKLKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             +   L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K    
Sbjct: 358 KAKEAELARIASGEAKMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++ 
Sbjct: 418 GAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM 
Sbjct: 478 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 DFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           YH PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA
Sbjct: 598 YHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIA 649


>gi|190151182|ref|YP_001969707.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307264531|ref|ZP_07546115.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189916313|gb|ACE62565.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306870130|gb|EFN01890.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 693

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 270/681 (39%), Positives = 388/681 (56%), Gaps = 32/681 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I    N       DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTALSGVGVAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP------ 183
            +    + HP Y I  N+Q +     +  +YS   GL  +  +K+  +AL+ L       
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALALLDKIKVGE 181

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIA 239
           +LP+  E +L +     S+ EA  ++H P     A+  E    PA++RL ++ELLA  +A
Sbjct: 182 LLPD--EYNLHKY----SLKEALQLLHRPPPDISAEQLEKGEHPAQKRLIFEELLAHNLA 235

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +  +R    +    P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++Q
Sbjct: 236 MQQVRVGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQ 295

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +
Sbjct: 296 GDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKV 355

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   LE I +G+  +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K  
Sbjct: 356 KGKARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGA 415

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+
Sbjct: 416 KDGIYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRV 475

Query: 476 KVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
                +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+ +
Sbjct: 476 YAACKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEI 535

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+
Sbjct: 536 MAEFKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCV 595

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F +A      
Sbjct: 596 LLYKPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDR 655

Query: 654 SLLEIARKDAKHILTQDPDLT 674
            ++ + +  AK I+ Q+P L 
Sbjct: 656 KMIPLVQNYAKQIIQQNPPLA 676


>gi|262392640|ref|YP_003284494.1| ATP-dependent DNA helicase RecG [Vibrio sp. Ex25]
 gi|262336234|gb|ACY50029.1| ATP-dependent DNA helicase RecG [Vibrio sp. Ex25]
          Length = 689

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 259/671 (38%), Positives = 395/671 (58%), Gaps = 28/671 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 6   PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 59

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F +G+ +   G+IK+
Sbjct: 60  VQGKVMAVDTI-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFTQGKLVHAYGEIKR 117

Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
               + +VHP Y F+ S+   DV   L   VY    GL     + +  +AL+   +L + 
Sbjct: 118 GGVGLEIVHPDYKFYVSEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALA---LLDKT 173

Query: 189 IEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241
             ++LL    +    ++++A + IH P    +     E   PA+ RL  +ELLA  +++L
Sbjct: 174 AVQELLPAGLYNHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSML 233

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R + +K+  +P+    K+  ++L  +PFSPT +Q   +++I  D+ + + M+R++QGD
Sbjct: 234 AVRSKGQKDSALPLGPCNKLKMQLLAQLPFSPTNAQTRVVQEIETDLEKPHPMMRLVQGD 293

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +  
Sbjct: 294 VGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFETMDIQVGWLAGKLKG 353

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             +   L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K    
Sbjct: 354 KAKEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQ 413

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++ 
Sbjct: 414 GAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRN 473

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM 
Sbjct: 474 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQ 533

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 534 DFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 593

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YH PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L
Sbjct: 594 YHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRL 653

Query: 656 LEIARKDAKHI 666
           +   ++ A+HI
Sbjct: 654 IPEVQRIARHI 664


>gi|237807017|ref|YP_002891457.1| ATP-dependent DNA helicase RecG [Tolumonas auensis DSM 9187]
 gi|237499278|gb|ACQ91871.1| ATP-dependent DNA helicase RecG [Tolumonas auensis DSM 9187]
          Length = 689

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 266/677 (39%), Positives = 384/677 (56%), Gaps = 31/677 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+S  +GVG K +  L+ +            DLLF+ P  + DR     I+E+S +   T
Sbjct: 7   PVSMLKGVGSKLAEKLAHL------RLHTVQDLLFHLPLRYEDRTRLYPIAELSADHACT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
             G I Q    Q  KRR     ++DG G +TL FF+  T   KN    GR+I   G+IK+
Sbjct: 61  TEGVI-QSCDIQQGKRRMLLCRISDGNGSLTLRFFH-FTAGQKNALAIGRRIRCFGEIKR 118

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL-----IEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
             +   +VHP Y      D + PL     +  VY    GL     + +  +AL    +L 
Sbjct: 119 GLHGFEIVHPEYKL---LDDDAPLDTDATLTPVYPTTEGLRQASLRNLTDQALQ---LLK 172

Query: 187 EWIEKDLLQKKSFP---SIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIA 239
           E   K+LL +  +P   S+++A  ++H P      A+      PA++RLA +EL+A  + 
Sbjct: 173 ENGVKELLPEGLYPRQLSLSDALLLLHRPPPDISLAQLENGQHPAQQRLALEELIAHHLT 232

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +L +R   ++    P+  +  + +++L ++PF PT +Q+  + +I  D++  + M+R++Q
Sbjct: 233 VLQLRYSVQQHQARPLATDWSLCEQLLAHLPFKPTGAQQRVVSEISHDLTLPHPMMRLVQ 292

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +A    +  GGQ V+MAP  +LA+QH      +     I    + G +
Sbjct: 293 GDVGSGKTLVAALAALQVIAHGGQVVLMAPTELLAEQHANNFSNWLTPLGIETGWLAGKI 352

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R K LE I  GQ  +++GTHA+FQD +++ +L+LVIVDEQHRFGV QRL L +K  
Sbjct: 353 KGKAREKQLEAIRSGQVKMVVGTHAVFQDQVEFQQLLLVIVDEQHRFGVHQRLALREKGA 412

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +T   D+D S I E P GR PI TV +P  R + VIER+
Sbjct: 413 QDGVYPHQLIMTATPIPRTLAMTIYADLDTSIIDELPPGRTPITTVALPDTRRETVIERV 472

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVER-FNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           +    EG++AYW+C  IEE +    ++                I ++HGRM   +K+ VM
Sbjct: 473 RQACLEGRQAYWVCTLIEESEVLECQAAENTAEELQLLLPELHIGLVHGRMKPAEKQRVM 532

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L
Sbjct: 533 QEFKEGILHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVL 592

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LYH PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG KQ+G+    IA      +
Sbjct: 593 LYHAPLSKTAQQRLGVLRDSNDGFVIAQKDLELRGPGEMLGAKQTGLADLKIADLIRDQA 652

Query: 655 LLEIARKDAKHILTQDP 671
           L+   ++ A+ I  Q P
Sbjct: 653 LIPQVQQLAQRIFQQYP 669


>gi|15604444|ref|NP_220962.1| ATP-dependent DNA helicase RECG (recG) [Rickettsia prowazekii str.
           Madrid E]
 gi|3861138|emb|CAA15038.1| ATP-DEPENDENT DNA HELICASE RECG (recG) [Rickettsia prowazekii]
          Length = 724

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 269/694 (38%), Positives = 392/694 (56%), Gaps = 36/694 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LFAP+  F  + +     +S +   G  N     DLLFY P S+ ++   P ++++    
Sbjct: 31  LFAPVKAFINIREDT---VSALKRLGIKN---IRDLLFYLPVSYQNKILSPNLTKVRGGE 84

Query: 69  IVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           I+     ++   S  LQKR  +P KI  ++ TG + L+FF++  + + N    G K  ++
Sbjct: 85  IIQTEIIVN---SINLQKRGNQPLKITASNNTGSLLLVFFHKPPQFILNKLKVGTKHIIS 141

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK++    ++ ++HP +I +         IE +YS+   LS       I++A+       
Sbjct: 142 GKVQFFDYQLQILHPEFITNPQLS---KAIEPLYSMTYSLSNTQLYSYIIKAIEIFEEKC 198

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIH---NPRKAKDFEWTS-----------PARERLAYDE 232
             IE   L K+    I +   I+H   +P        T+            A+++LA  E
Sbjct: 199 NGIEDKEL-KEYLDVILQNLKILHVFLSPHNLISCSRTTDIVVNPSYAIVAAKKQLAIKE 257

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           L+A QI+LL +R Q  ++ G        I + ILR + F  T  Q+  I++I  + S K 
Sbjct: 258 LIANQISLLNVRMQINRKHGNIYPKAASIQENILRELGFELTYYQKQVIEEIEFEQSDKV 317

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R+LQGDVGSGKTLVAL+ M   V  G QA +MAP  +LA QHY+F  K  +NT I V
Sbjct: 318 EMMRLLQGDVGSGKTLVALLTMVNVVTTGFQATLMAPTDLLANQHYDFFVKALKNTNIRV 377

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG +    R+  + ++ +G+  I+IGTHALFQ+ + + KL  +++DEQHRFGVQQRL
Sbjct: 378 GLLTGKILGKARKNIIIQLVNGKIDILIGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRL 437

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L  K   P VL+MTATPIPR+L LT  GD+ +SK+  KP  R  I T  + +N+I  +I
Sbjct: 438 NLINKGVNPDVLIMTATPIPRSLALTMFGDMTVSKLIGKPKNRLSIVTKTMSVNKIGYII 497

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFR------SVVERFNSLHEHFTSSIAIIHGRMS 526
           + +   L  G++ YWICP I ++++   +       V+ RFNS+   +     IIHG+M 
Sbjct: 498 KAINKRLIAGERVYWICPLITQREKETLQEDLLLMDVINRFNSIKNIYQGYTGIIHGKMK 557

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           +  KE +M  FK G  K+L+AT VIEVGIDV +A++I+IENAE FGLAQLHQLRGRVGRG
Sbjct: 558 NDQKERIMKQFKEGEIKILVATNVIEVGIDVSEATLIVIENAEQFGLAQLHQLRGRVGRG 617

Query: 587 EEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
              S CILLY+P  L K +  R  ++K+T DGF IAE+DLK R  GEILGIKQSG   F 
Sbjct: 618 RLQSYCILLYNPKRLGKVAQNRFKIMKHTNDGFYIAEQDLKLRGSGEILGIKQSGEIDFF 677

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
            A      +LL  A K A+  ++   ++  V  Q
Sbjct: 678 FADLAEDYALLIKAHKIAEREISLKDNVNFVNFQ 711


>gi|48727546|gb|AAT46072.1| RecG [Vibrio alginolyticus]
          Length = 693

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/652 (39%), Positives = 387/652 (59%), Gaps = 28/652 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F  G+ +   G+IK+
Sbjct: 64  VQGKVMAIDT-TFGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFSNGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
               + +VHP Y F+ S+   DV   L   VY    GL     + +  +ALS   +L + 
Sbjct: 122 GGMGLEIVHPDYKFYVSEQNPDVEQSLT-PVYPTTDGLRQITLRNLTEQALS---LLDKA 177

Query: 189 IEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241
             ++LL    +    ++++A + IH P    +     E   PA+ RL  +ELLA  +++L
Sbjct: 178 AVQELLPSGLYDHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R + ++++ +P+     + +++L  +PFSPT SQ   +K+I  D+ + + M+R++QGD
Sbjct: 238 AVRSKGQQDVALPLASCDSLKKQLLAQLPFSPTNSQARVVKEIEADLEKTHPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +  
Sbjct: 298 VGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIQVGWLAGKLKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             +   L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K    
Sbjct: 358 KAKEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++ 
Sbjct: 418 GAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM 
Sbjct: 478 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 DFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           YH PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA
Sbjct: 598 YHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIA 649


>gi|302189228|ref|ZP_07265901.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. syringae
           642]
          Length = 691

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/680 (37%), Positives = 395/680 (58%), Gaps = 30/680 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+K+       ET   D+LF+ P  + DR     I  +   +   I
Sbjct: 9   VTALKGVGEAMAEKLAKV-----GLET-LQDVLFHLPLRYQDRTRIVPIGALRPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
            + + + HP Y    + D   P+   +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240
           W+ ++L +     S+ +A   +H+P    D E       W   A+ RLA++ELL  Q++ 
Sbjct: 180 WLPEELARDYQLASLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QG
Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G + 
Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVDVAWLAGKLK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K   
Sbjct: 357 GKARVASLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++
Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M 
Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMA 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LL
Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       L
Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655

Query: 656 LEIARKDAKHILTQDPDLTS 675
           L   R  A+ +L + P   S
Sbjct: 656 LPAVRDAAQALLERWPQHVS 675


>gi|254448948|ref|ZP_05062403.1| ATP-dependent DNA helicase RecG [gamma proteobacterium HTCC5015]
 gi|198261485|gb|EDY85775.1| ATP-dependent DNA helicase RecG [gamma proteobacterium HTCC5015]
          Length = 700

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 264/688 (38%), Positives = 404/688 (58%), Gaps = 42/688 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           L A ++ F+GVG   +  L+++ I+          D+LF+ P  + DR     I  + + 
Sbjct: 3   LTASVTQFKGVGPALAEKLARLPIHT-------VQDVLFHLPLRYQDRTRVTPICAL-QH 54

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
               +     +H+   +++RR   + L+DGTG + L FFY  ++  KN    G +I   G
Sbjct: 55  GAEVVVEGEVEHAEIVIRRRRQMLVQLSDGTGSLVLRFFY-FSQAQKNALERGTRIRCFG 113

Query: 128 KIKKLK-NRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP 183
           + ++    R  MVHP Y +   +    P+  A   +Y    G+S  + +K+  +AL  + 
Sbjct: 114 EARETALGRFEMVHPEYRY--GEQAATPMETALTPIYPATDGVSQSVLRKLTDQALEHVD 171

Query: 184 --VLPEWIEKDLLQKK--SFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLA 235
             +LP+ I  D L     + P++ EA +++H P      A   +  +PA++RLA++ELLA
Sbjct: 172 TGLLPDLIPADCLPPSLLNVPTLGEALHLLHRPPPTVSLAALAQGGNPAQQRLAFEELLA 231

Query: 236 GQIALLLMRKQFKKEIGIPI--NVE-GKIAQKILRN-----IPFSPTKSQESAIKDILQD 287
            Q+++LL+R++ + E  +PI  N E G  +Q  LR      +PF  T++Q+  +K+I  D
Sbjct: 232 HQLSMLLLRQRVQSETAVPIGTNTETGAPSQNTLRRQFMQALPFQLTQAQQRVVKEIDTD 291

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           +++    LR++QGDVGSGKT+VA +A+ AAVE G QA +MAP  +LA+QH++ +  + + 
Sbjct: 292 IARDWPSLRLVQGDVGSGKTVVAALALLAAVECGQQAAMMAPTELLAEQHWQTLSAWFEP 351

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             I V  ++  +  A RR+ L  +A G   +++GTHALFQ+ + + +L L++VDEQHRFG
Sbjct: 352 LGIRVGWLSSRVKGAKRRQTLAELASGDVALVVGTHALFQEEVIFQRLALLVVDEQHRFG 411

Query: 408 VQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           V QRL L +K      +PH ++MTATPIPRTL +T+  D+D S I E P GR PIKTV +
Sbjct: 412 VHQRLALREKGQNSGISPHQVIMTATPIPRTLAMTAYADLDYSVIDELPPGRTPIKTVAL 471

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522
             +R  +VIER++    +G++ YW+C  IEE +    ++  +  +SL E   +  I ++H
Sbjct: 472 AESRRADVIERIRSACEQGRQVYWVCTLIEESEMVQCQAAEDTASSLAEAMPAVRIGLVH 531

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GRM   DKE  M  FK G   LL+ATTVIEVG+DV +AS+++IENAE  GL+QLHQLRGR
Sbjct: 532 GRMKPADKERTMAQFKAGDIDLLVATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGR 591

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG   SSC+LLY  PL + +  RL  ++ + DGF IA EDL  R  GE+LG +Q+G  
Sbjct: 592 VGRGAVESSCVLLYKNPLGEKARRRLDTMRRSNDGFEIAREDLDMRGPGEVLGTRQTGDM 651

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQD 670
            F +A     + L+     DA H L  D
Sbjct: 652 SFRVADLTRDEHLV-----DAIHQLAGD 674


>gi|156972947|ref|YP_001443854.1| ATP-dependent DNA helicase [Vibrio harveyi ATCC BAA-1116]
 gi|156524541|gb|ABU69627.1| hypothetical protein VIBHAR_00625 [Vibrio harveyi ATCC BAA-1116]
          Length = 693

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/653 (39%), Positives = 390/653 (59%), Gaps = 30/653 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           + G + +  ++F   KR+   + ++DG G ITL FF   T  +KN F  G+ +   G+IK
Sbjct: 64  VQGKVMAVDTTFG--KRKMLTVKISDGNGTITLRFF-NFTAAMKNNFSNGKLVHAYGEIK 120

Query: 131 KLKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           +    + +VHP Y F+ S+   DV   L   VY    GL     + +  +ALS   +L +
Sbjct: 121 RGGMGLEIVHPDYKFYVSEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALS---LLDK 176

Query: 188 WIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240
              ++LL    +    ++++A + IH P    +     E   PA+ RL  +ELLA  +++
Sbjct: 177 AAVQELLPSGLYDHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSM 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +R + +K++ +P+     + +++L  +PFSPT +Q   +K+I  D+ + + M+R++QG
Sbjct: 237 LAVRSKGQKDVALPLASCDSLKKQLLAQLPFSPTNAQARVVKEIEADLEKTHPMMRLVQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G + 
Sbjct: 297 DVGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIQVGWLAGKLK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +   L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K   
Sbjct: 357 GKAKEAELARIASGEAKMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAK 416

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++
Sbjct: 417 QGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVR 476

Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
              L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM
Sbjct: 477 NACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVM 536

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+L
Sbjct: 537 QDFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVL 596

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           LYH PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA
Sbjct: 597 LYHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIA 649


>gi|218708221|ref|YP_002415842.1| ATP-dependent DNA helicase RecG [Vibrio splendidus LGP32]
 gi|218321240|emb|CAV17190.1| ATP-dependent DNA helicase recG [Vibrio splendidus LGP32]
          Length = 696

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 269/682 (39%), Positives = 389/682 (57%), Gaps = 38/682 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L K+    N       DLLF+ P  + DR     I ++       
Sbjct: 13  PLNSLSGVGAKVAEKLEKV-GLNNVQ-----DLLFHLPLRYEDRTRIYPIVKLHAGLWAA 66

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  H      KR+   + ++DG G ITL FF   T  +KN F EG+++   G+IK+
Sbjct: 67  VQGKV-MHVDTIFGKRKMLAVKISDGNGTITLRFF-NFTAGMKNNFAEGKQVHAYGEIKR 124

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA----VYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
               + +VHP Y F   +    P +EA    VY    GL     + +  +AL       E
Sbjct: 125 GNMGLEIVHPDYKFFAPRQQ--PDVEANLTPVYPTTEGLRQVTLRNLTDQAL-------E 175

Query: 188 WIEK----DLLQKKSFP---SIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAG 236
            I+K    +LL    +    ++A+A + IH P    D E       PA+ RL  +ELLA 
Sbjct: 176 LIDKAAVNELLPSGLYDHQITLAQALHTIHRPPPGIDLELFDEGKHPAQLRLIMEELLAQ 235

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            +++L +R + +++  +P      +  K+L  +PFSPT +Q    K+I  D+ + + M+R
Sbjct: 236 NLSMLSVRSKGQQDKAMPFPPVNTLKDKLLAQLPFSPTNAQARVTKEIEADLEKPHPMMR 295

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + 
Sbjct: 296 LVQGDVGSGKTLVAALAAVRALEHGQQVALMAPTELLAEQHAINFANWFEAMGIQVGWLA 355

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G +    R   L RIA G+A +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL+L +
Sbjct: 356 GKLKGKARETELTRIASGEAQMVVGTHALFQEHVEFKNLGLVIIDEQHRFGVHQRLELRE 415

Query: 417 KATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           K       PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++
Sbjct: 416 KGAKQGYYPHQLVMTATPIPRTLAMTAYADLETSIIDELPPGRTPIQTVAIPDTKRDDIV 475

Query: 473 ERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
           ER+K   L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K
Sbjct: 476 ERVKNACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEK 535

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           ++VM  FK     LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S
Sbjct: 536 QAVMQEFKENKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVAS 595

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+LLYH PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA   
Sbjct: 596 HCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLV 655

Query: 651 LHDSLLEIARKDAKHILTQDPD 672
               L+   ++ A+HI    PD
Sbjct: 656 RDQRLIPEVQRIARHIHDSYPD 677


>gi|88800532|ref|ZP_01116095.1| ATP-dependent DNA helicase RecG [Reinekea sp. MED297]
 gi|88776763|gb|EAR07975.1| ATP-dependent DNA helicase RecG [Reinekea sp. MED297]
          Length = 693

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 251/661 (37%), Positives = 372/661 (56%), Gaps = 20/661 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +  L+++        T   DLLF+ P  + DR     I  +    
Sbjct: 7   LSAPISRLKGAGPKLADKLAQL------ELTSIGDLLFHLPYKYQDRTRITPIGSLRLGM 60

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            V I G I + +     +RR     + DG+G +T+  F+  T+  ++V   G  I   G+
Sbjct: 61  AVVIEGDI-RGTQVAFGRRRSLICRIQDGSGLLTIRLFH-FTKAQQHVLKNGAAIRCYGE 118

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-- 184
           ++     + M+HP Y      +       +  +Y    G+     + +I +AL  L    
Sbjct: 119 VRMGPTGLEMIHPEYQVREQGEFEALDQRLTPLYPTTEGIHQIRLRNLIEQALDVLNAQG 178

Query: 185 -LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIA 239
            LPEW+  D L     PS+ +A   +H P    D     +   PA++RLA++ELLA  ++
Sbjct: 179 GLPEWLPPDWLTPWQLPSLTDALRTLHRPDPNTDTQTLLDGEHPAQQRLAFEELLAHHLS 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L  +R+  +     PI    ++   +   +PFS T +Q+    +I QD++    MLR++Q
Sbjct: 239 LQALRQATQATGAQPIAKSKRLVPALRDQLPFSLTGAQQRVCGEIAQDLAHPFPMLRLVQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKTLVALIA   A+E+G Q  +MAP  +LA+QH+  ++ + +   + + ++ G  
Sbjct: 299 GDVGAGKTLVALIAALQAIESGLQVALMAPTELLAEQHFLNMQAWCEPLGVSIGLLLGKT 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            +  R + L+ +  G+  +++GTHALFQ  + Y+ L LVI+DEQHRFGVQQRL L +KA 
Sbjct: 359 SRKDRNQLLDGLERGEVQLLVGTHALFQKGVDYHNLGLVIIDEQHRFGVQQRLALKEKAN 418

Query: 420 --APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L MTATPIPRTL +T+  D+DIS I E P GR P+ T +I  +R + VI R+  
Sbjct: 419 NGTPHQLTMTATPIPRTLAMTAFADMDISIIDELPPGRTPVTTTVISQDRREAVIRRVNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
              +G++ YW+C  IEE +E    +     N L E      I ++HG++   DK  +M +
Sbjct: 479 ACDDGRQIYWVCTLIEESEELQAEAAEATANRLAEALPGRQIGLLHGKLKAADKSRLMAA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G   +L+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L++
Sbjct: 539 FKAGELDILVATTVIEVGVDVPNASVMIIENPERLGLAQLHQLRGRVGRGTTESYCLLMF 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLS+    RL V++ T DGF+IAEEDLK R  GE+LG +Q+G   F +A  E    LL
Sbjct: 599 GQPLSEQGKQRLEVMRQTSDGFVIAEEDLKLRGPGEVLGTRQTGAVGFRVADMERDAHLL 658

Query: 657 E 657
           E
Sbjct: 659 E 659


>gi|149908557|ref|ZP_01897219.1| RecG-like helicase [Moritella sp. PE36]
 gi|149808391|gb|EDM68328.1| RecG-like helicase [Moritella sp. PE36]
          Length = 690

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 267/675 (39%), Positives = 383/675 (56%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+   +GVG K +  L+K+      N     DLLF+ PS + DR     I ++      T
Sbjct: 7   PVIELKGVGAKMADKLAKL------NLMTVQDLLFHLPSRYQDRTTIYPIQDLLPGLHGT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I         KR+     +NDGTG ITLLFF+      KN F  G+ IT  G+ ++
Sbjct: 61  IEGEIVS-CDVTFGKRKIMSCKVNDGTGIITLLFFHFNAGQ-KNSFSVGKTITAFGEFRR 118

Query: 132 LKNRIIMVHPHY-IFH-NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
            +    +VHP Y + H  S +++   +  +Y    GL     + +  +AL  L    L E
Sbjct: 119 GRFGYEIVHPEYKLAHATSSEMSAETLTPIYPSTEGLKQLTLRNLTDQALQHLSQTTLQE 178

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLM 243
            + K L   +    +  A  ++H P      E       PA++RL  +ELLA  I++L +
Sbjct: 179 LLPKGLYTGQI--ELNHAIQLLHRPTPDVSLELLEQGQHPAQQRLIIEELLAQNISMLQL 236

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           RK+ ++   I +     +  K L  +PF+PT +Q+  + +I QD+ +   M+R++QGDVG
Sbjct: 237 RKKMQQHPAIKLPAHKTLTDKFLAQLPFTPTNAQQRVVGEIQQDLQKGYPMMRLIQGDVG 296

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+  G Q  +MAP  ILA+QH    K +     I V  ++G      
Sbjct: 297 SGKTLVAALAALQAIGNGYQVALMAPTEILAEQHALNFKGWFNKLGIKVGWLSGKQKGKA 356

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R   L  IA G+  +I+GTHA+FQ ++++  L LVI+DEQHRFGV+QRL L +K      
Sbjct: 357 REAELASIASGETQMIVGTHAIFQAAVKFLNLTLVIIDEQHRFGVEQRLALREKGAVNGL 416

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L MTATPIPRTL +T+  D++ S I E P GR PI TV++P  +  ++IER+++ V
Sbjct: 417 YPHQLFMTATPIPRTLAMTAYADLNTSVIDELPPGRTPITTVVMPDTKRSKIIERVELAV 476

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++ YW+C  IEE      ++  +  N L +      I ++HGRM  I+K+ VMD+F
Sbjct: 477 KNEGRQVYWVCTLIEESDVLEAQAAEDTANDLQKQLPDLRIGLVHGRMKSIEKQYVMDAF 536

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG+  S C+LLYH
Sbjct: 537 KTKQLDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGKVASHCVLLYH 596

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RLSVL+ T DGF IA+ DL+ R  GE+LG KQ+G+    +A       L+ 
Sbjct: 597 APLSDTGSKRLSVLRETTDGFKIAQRDLEIRGPGEMLGSKQTGIADLKVADLVRDQHLIP 656

Query: 658 IARKDAKHILTQDPD 672
           + +  A+H+L Q PD
Sbjct: 657 LVQNIARHLLQQHPD 671


>gi|86146551|ref|ZP_01064873.1| ATP-dependent DNA helicase RecG [Vibrio sp. MED222]
 gi|85835608|gb|EAQ53744.1| ATP-dependent DNA helicase RecG [Vibrio sp. MED222]
          Length = 692

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 269/682 (39%), Positives = 389/682 (57%), Gaps = 38/682 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L K+    N       DLLF+ P  + DR     I ++       
Sbjct: 9   PLNSLSGVGAKVAEKLEKV-GLNNVQ-----DLLFHLPLRYEDRTRIYPIVKLHAGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  H      KR+   + ++DG G ITL FF   T  +KN F EG+++   G+IK+
Sbjct: 63  VQGKV-MHVDTIFGKRKMLAVKISDGNGTITLRFF-NFTAGMKNNFAEGKQVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA----VYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
               + +VHP Y F   +    P +EA    VY    GL     + +  +AL       E
Sbjct: 121 GNMGLEIVHPDYKFFAPRQQ--PDVEANLTPVYPTTEGLRQVTLRNLTDQAL-------E 171

Query: 188 WIEK----DLLQKKSFP---SIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAG 236
            I+K    +LL    +    ++A+A + IH P    D E       PA+ RL  +ELLA 
Sbjct: 172 LIDKAAVNELLPSGLYDHQITLAQALHTIHRPPPGIDLELFDEGKHPAQLRLIMEELLAQ 231

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            +++L +R + +++  +P      +  K+L  +PFSPT +Q    K+I  D+ + + M+R
Sbjct: 232 NLSMLSVRSKGQQDKAMPFPPVNTLKDKLLAQLPFSPTNAQARVTKEIEADLEKPHPMMR 291

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + 
Sbjct: 292 LVQGDVGSGKTLVAALAAVRALEHGQQVALMAPTELLAEQHAINFANWFEAMGIQVGWLA 351

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G +    R   L RIA G+A +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL+L +
Sbjct: 352 GKLKGKARETELTRIASGEAQMVVGTHALFQEHVEFNNLGLVIIDEQHRFGVHQRLELRE 411

Query: 417 KATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           K       PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++
Sbjct: 412 KGAKQGYYPHQLVMTATPIPRTLAMTAYADLETSIIDELPPGRTPIQTVAIPDTKRDDIV 471

Query: 473 ERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
           ER+K   L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K
Sbjct: 472 ERVKNACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEK 531

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           ++VM  FK     LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S
Sbjct: 532 QAVMQEFKENKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVAS 591

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+LLYH PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA   
Sbjct: 592 HCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLV 651

Query: 651 LHDSLLEIARKDAKHILTQDPD 672
               L+   ++ A+HI    PD
Sbjct: 652 RDQRLIPEVQRIARHIHDSYPD 673


>gi|304399041|ref|ZP_07380910.1| ATP-dependent DNA helicase RecG [Pantoea sp. aB]
 gi|304353501|gb|EFM17879.1| ATP-dependent DNA helicase RecG [Pantoea sp. aB]
          Length = 692

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/679 (37%), Positives = 385/679 (56%), Gaps = 25/679 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST  GVG   +  L+KI      +     DLL + P  + DR     I+++      T
Sbjct: 10  PLSTLTGVGASQAAKLAKI------DLHTVQDLLLHLPLRYEDRTQLYAINDLLPGIWAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  H+     +RR     ++DG+G +T+ FF     M KN    GR++T  G+IK+
Sbjct: 64  VEGEVL-HTDITFGRRRMMVCQISDGSGVLTMRFFNFNAGM-KNNLSPGRRVTAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPVLP-- 186
            +    ++HP Y     Q  N  L E    VY    G+     + +  +AL+ L   P  
Sbjct: 122 GQRGAEIIHPEYRIQGEQS-NVTLEETLTPVYPTTEGIRQATLRNLTDQALTLLESCPIA 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLL 242
           E + K+L       S+ +A   +H P    R ++      PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPKEL--SGGLISLPDALRTLHRPPPDLRLSELESGRHPAQRRLILEELLAHNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   +P+     ++ ++L  +PFSPT +Q+  + +I +D++    M+R++QGDV
Sbjct: 239 VRAGAQRYYALPMPPRHNLSDQLLAALPFSPTNAQKRVVAEIEKDLANDFPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA ++    +  G Q  +MAP  +LA+QH    +++     I V  + G     
Sbjct: 299 GSGKTLVAALSALNVIAHGKQVALMAPTELLAEQHASNFRQWFAPLGIEVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+   E IA GQ  +++GTHALFQ+ +Q+  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARQAQQEAIASGQVAMVVGTHALFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGEEQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R +E++ R++  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRREEIVARVEHA 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             EG++AYW+C  +EE +    ++    + SL       +I ++HGRM   +K++VM +F
Sbjct: 479 CREGRQAYWVCTLVEESELLEAQAAEASWESLKTALPDLNIGLVHGRMKPAEKQAVMQAF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K    +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 539 KANELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +++ 
Sbjct: 599 APLSKTAQKRLQVLRDSNDGFVIAQFDLEIRGPGELLGTRQTGNAEFKVADLLRDAAMVP 658

Query: 658 IARKDAKHILTQDPDLTSV 676
             ++ A+HI    P+  S 
Sbjct: 659 EVQRVARHIHQHYPEQASA 677


>gi|153833907|ref|ZP_01986574.1| ATP-dependent DNA helicase RecG [Vibrio harveyi HY01]
 gi|148869745|gb|EDL68722.1| ATP-dependent DNA helicase RecG [Vibrio harveyi HY01]
          Length = 693

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/652 (39%), Positives = 388/652 (59%), Gaps = 28/652 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           + G + +  ++F   KR+   + ++DG G ITL FF   T  +KN F  G+ +   G+IK
Sbjct: 64  VQGKVMAVDTTFG--KRKMLTVKISDGNGTITLRFF-NFTAAMKNNFSNGKLVHAYGEIK 120

Query: 131 KLKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVL 185
           +    + +VHP Y F+ S+   DV   L   VY    GL     + +  +ALS L    +
Sbjct: 121 RGGMGLEIVHPDYKFYVSEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALSLLDKAAV 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241
            E +   L   +   ++++A + IH P    +     E   PA+ RL  +ELLA  +++L
Sbjct: 180 QELLPSGLYNHQI--TMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R + ++++ +P+     + +++L  +PFSPT +Q   +K+I  D+ + + M+R++QGD
Sbjct: 238 AVRSKGQQDVALPLASCDSLKKQLLAQLPFSPTNAQARVVKEIEADLEKTHPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +  
Sbjct: 298 VGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFKKMGIQVGWLAGKLKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             +   L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K    
Sbjct: 358 KAKEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D++IER++ 
Sbjct: 418 GAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIIERVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM 
Sbjct: 478 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 DFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           YH PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA
Sbjct: 598 YHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIA 649


>gi|325275147|ref|ZP_08141120.1| ATP-dependent DNA helicase RecG [Pseudomonas sp. TJI-51]
 gi|324099719|gb|EGB97592.1| ATP-dependent DNA helicase RecG [Pseudomonas sp. TJI-51]
          Length = 692

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/681 (37%), Positives = 391/681 (57%), Gaps = 29/681 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG+  +  L+K+   G  N     D+LF+ P  + DR     I ++   +   
Sbjct: 8   PVTVLKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGQLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +S  +   + KRR   + L DG+G ++L  FY  +   K     G  +   G+ + 
Sbjct: 62  IEGVVSG-ADVTMGKRRSLVVRLGDGSGVLSL-RFYHFSNAQKEGLKRGTHLRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
             + + + HP Y   N  +   P+   +  +Y    GL+    +++  ++LS L    LP
Sbjct: 120 GASGLEIYHPEYRALNGDEPPPPVDQTLTPIYPSTEGLTQQRLRQLCQQSLSLLGPRSLP 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIA 239
           +W+  +L +      + +A   +HNP    D E       W   A+ RLA++ELL  Q++
Sbjct: 180 DWLPDELARDYQLAPLDDAIRYLHNPPADADVEELALGHHW---AQHRLAFEELLTHQLS 236

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
              +R+  +      +    ++  + L N+ F PT +Q+    +I  D+SQ   M+R++Q
Sbjct: 237 QQRLRESLRSLRAPVLPKATRLPAQYLANLGFQPTGAQQRVANEIAYDLSQHEPMMRLVQ 296

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VA +A   A+EAG Q  +MAP  ILA+QHY   K++ +   + V  + G +
Sbjct: 297 GDVGAGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGLEVAWLAGKL 356

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R  +LE+IA+G A +++GTHALFQD +++  L L I+DEQHRFGVQQRL L +K  
Sbjct: 357 KGKARAASLEQIANG-APMVVGTHALFQDEVKFKHLALAIIDEQHRFGVQQRLALRKKGV 415

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           A    PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER+
Sbjct: 416 AGELCPHQLIMTATPIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERV 475

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           +   +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K  +M
Sbjct: 476 RAACAEGRQAYWVCTLIEESEELTCQAAESTYEELGSALGELRVGLIHGRMKPAEKAEIM 535

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  +S C+L
Sbjct: 536 AEFKAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVL 595

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LYHPPLS+    RL +++ T DGF+IAE+DL  R  GE+LG +Q+G+ +F +A       
Sbjct: 596 LYHPPLSQIGRERLGIMRETNDGFIIAEKDLALRGPGEMLGTRQTGLLQFKVADLMRDAD 655

Query: 655 LLEIARKDAKHILTQDPDLTS 675
           LL   R  A+ ++ + P+  S
Sbjct: 656 LLPAVRDAAQALIARWPEHVS 676


>gi|269965887|ref|ZP_06179980.1| ATP-dependent DNA helicase RecG [Vibrio alginolyticus 40B]
 gi|269829440|gb|EEZ83681.1| ATP-dependent DNA helicase RecG [Vibrio alginolyticus 40B]
          Length = 693

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 259/671 (38%), Positives = 395/671 (58%), Gaps = 28/671 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F +G+ +   G+IK+
Sbjct: 64  VQGKVMAVDTI-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFTQGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
               + +VHP Y F+ S+   DV   L   VY    GL     + +  +AL+   +L + 
Sbjct: 122 GGMGLEIVHPDYKFYVSEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALA---LLDKT 177

Query: 189 IEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241
             ++LL    +    ++++A + IH P    +     E   PA+ RL  +ELLA  +++L
Sbjct: 178 AVQELLPAGLYDHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R + +K+  +P+    K+  ++L  +PFSPT +Q   +++I  D+ + + M+R++QGD
Sbjct: 238 AVRSKGQKDSALPLGPCNKLKTQLLAQLPFSPTNAQTRVVQEIEADLEKPHPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +  
Sbjct: 298 VGSGKTLVAALAAVRAIEHGHQVALMAPTELLAEQHAINFANWFETMGIQVGWLAGKLKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             +   L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K    
Sbjct: 358 KAKEAELARIASGEAKMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++ 
Sbjct: 418 GAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM 
Sbjct: 478 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 DFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YH PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L
Sbjct: 598 YHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGIADFKIADLVRDQRL 657

Query: 656 LEIARKDAKHI 666
           +   ++ A+HI
Sbjct: 658 IPEVQRIARHI 668


>gi|212711591|ref|ZP_03319719.1| hypothetical protein PROVALCAL_02666 [Providencia alcalifaciens DSM
           30120]
 gi|212685693|gb|EEB45221.1| hypothetical protein PROVALCAL_02666 [Providencia alcalifaciens DSM
           30120]
          Length = 693

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/679 (37%), Positives = 389/679 (57%), Gaps = 34/679 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L++  G+G   S  + KI      N  +  DLL + P  + D      I ++      TI
Sbjct: 11  LTSLHGIGASQSEKMRKI----GLNTVQ--DLLLHFPLRYEDHTRLYHIKDLMPGTTATI 64

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
           TG + Q +     ++R    L++DGTG +TL FF     M KN   EGR++T  G++++ 
Sbjct: 65  TGEVLQ-TKVVFGRKRMMTCLISDGTGNLTLRFFNFSAAM-KNSLAEGRQVTAYGEVRRG 122

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIE---AVYSLPTGLSVDLFKKIIVEALSRL------P 183
                ++HP Y      + N PL E    VY    G+     +K++ +A++ L       
Sbjct: 123 NTGPEIIHPEYKVSQEAE-NVPLQENLTPVYPTTEGVRQATLRKVMDQAIAMLDSSNIQE 181

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIA 239
           +LPE   + L+      S+ +A  ++HNP      +       PA++RL  +ELLA  ++
Sbjct: 182 LLPEEFSRSLI------SLPDAIRLLHNPPPDVSLDELEKGHHPAQKRLILEELLAHHLS 235

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +L +R   ++    P+   GK+   +L N+PFSPT +Q+  + +I  D+ +   M+R++Q
Sbjct: 236 MLAIRAGNERLYAEPLISTGKLKAPLLANLPFSPTNAQKRVVAEIEADLHKNAPMMRLIQ 295

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +A   A+E G Q  +MAP  ILA+QH    K++ +   I V  + G  
Sbjct: 296 GDVGSGKTLVAALAAICAIENGKQVALMAPTEILAEQHASTFKQWFEPLGIKVGWLAGKQ 355

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R++  + IA+G+  ++IGTHA+FQ+ + ++ L LVI+DEQHRFGV QRL L +K  
Sbjct: 356 KGKARQQQQDAIANGEVSMVIGTHAIFQEHVSFHSLGLVIIDEQHRFGVHQRLALREKGE 415

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R  +++ER+
Sbjct: 416 QQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIADSRRSDIVERV 475

Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +   L EG++AYW+C  I++ +    ++       L        + ++HGRM   +K+S+
Sbjct: 476 RQACLEEGRQAYWVCTLIDDSEVLEAQAAQATSEELALALPELKVGLVHGRMKPTEKQSI 535

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +FKN   +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S C+
Sbjct: 536 MAAFKNNEIQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGSVASHCV 595

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PL+  +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G   F +A      
Sbjct: 596 LLYKTPLTHTAKQRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNADFKVADLLRDQ 655

Query: 654 SLLEIARKDAKHILTQDPD 672
            +L   ++ A+HI    P+
Sbjct: 656 YMLPEVQRLARHIQQNYPE 674


>gi|322515551|ref|ZP_08068533.1| DNA helicase RecG [Actinobacillus ureae ATCC 25976]
 gi|322118394|gb|EFX90657.1| DNA helicase RecG [Actinobacillus ureae ATCC 25976]
          Length = 693

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 269/678 (39%), Positives = 386/678 (56%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I    N       DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTGLSGVGAAIAEKLSRI-GINNVQ-----DLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQLTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y I  N+Q +     +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALA---LLDKIK 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLL 242
             +LL  +  P   S+ EA  ++H P     A+  E    PA++RL ++ELLA  +A+  
Sbjct: 179 VGELLPDEYNPHKYSLKEALQLLHRPPPDISAEQLEKGDHPAQKRLIFEELLAHNLAMQQ 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R    + I  P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDV
Sbjct: 239 VRVGVNQLIATPLRYQTDLKSRFLVSLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I    + G +   
Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEAGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   LE I +G+  +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARTVQLEAIKNGEIQMIIGTHALFQESVEFHNLTLVIIDEQHRFGVHQRLTLREKGAKDG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+   
Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478

Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+ +M  
Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAE 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F  A       ++
Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKAANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
            + +  AK I+ Q+P L 
Sbjct: 659 PLVQNYAKQIIRQNPPLA 676


>gi|170719350|ref|YP_001747038.1| ATP-dependent DNA helicase RecG [Pseudomonas putida W619]
 gi|169757353|gb|ACA70669.1| ATP-dependent DNA helicase RecG [Pseudomonas putida W619]
          Length = 692

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/678 (37%), Positives = 391/678 (57%), Gaps = 25/678 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+K+   G  N     D+LF+ P  + DR     I  +   +   I
Sbjct: 9   VTALKGVGEAMAQKLAKV---GLEN---LQDVLFHLPLRYQDRTRVVPIGALRPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DG+G ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVS-GADVTMGKRRSLVVRLGDGSGVLSL-RFYHFSNAQKEGLKRGTHLRCYGEARPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
            + + + HP Y   N  +   P+   +  +Y    GL+    + +  ++L  L    LP+
Sbjct: 121 ASGLEIYHPEYRALNGDEPPPPVEQTLTPIYPSTEGLTQQRLRLLCQQSLDMLGPRSLPD 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
           W+  +L +      + +A   +HNP    D     E    A+ RLA++ELL  Q++   +
Sbjct: 181 WLPDELARDYHLAPLDDAIRYLHNPPADADLDELAEGQHWAQHRLAFEELLTHQLSQQRL 240

Query: 244 RKQFKKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           R+  +  +  P+  + K  Q + L N+ F PT +Q+    +I  D+SQ   M+R++QGDV
Sbjct: 241 RESLRS-LRAPVLPKAKRLQLQYLANLGFKPTGAQQRVADEIAYDLSQAEPMMRLVQGDV 299

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+VA +A   A+EAG Q  +MAP  ILA+QHY   K++ +   + V  + G +   
Sbjct: 300 GAGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGLEVAWLAGKLKGK 359

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R  ALE+IA+G A +++GTHALFQ+ +Q+  L L I+DEQHRFGVQQRL L +K  A  
Sbjct: 360 ARASALEQIANG-APMVVGTHALFQEEVQFKHLALAIIDEQHRFGVQQRLALRKKGVAGE 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++  
Sbjct: 419 LCPHQLIMTATPIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAA 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K +VM  F
Sbjct: 479 CAEGRQAYWVCTLIEESEELTCQAAESTYEELGSALGELRVGLIHGRMKPAEKAAVMAEF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYH
Sbjct: 539 KQGDLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL 
Sbjct: 599 PPLSQIGRERLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 658

Query: 658 IARKDAKHILTQDPDLTS 675
             R  A+ ++ + P+  S
Sbjct: 659 AVRDAAQALIARWPEHVS 676


>gi|331018574|gb|EGH98630.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 691

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/683 (37%), Positives = 397/683 (58%), Gaps = 36/683 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+K+   G  N     D+LF+ P  + DR     I  +S  +   I
Sbjct: 9   VTALKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRIVPIGALSPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188
            + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+W
Sbjct: 121 ASGLEIYHPEYRAITGDEPPPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPDW 180

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIALL 241
           + ++L +      + +A   +H+P    D +       W   A+ RLA++ELL  Q++  
Sbjct: 181 LPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLSQQ 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGD
Sbjct: 238 RLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +  
Sbjct: 298 VGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVDVAWLAGKLKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K    
Sbjct: 358 KARVTSLEQIATGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGG 416

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++ 
Sbjct: 417 LMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRA 476

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKES 532
             +EG++AYW+C  IEE +E   ++      + +E  TS+     + +IHGRM   +K +
Sbjct: 477 ACAEGRQAYWVCTLIEESEELTCKAA----ETTYEELTSALGEVRVGLIHGRMKPAEKAA 532

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M  FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C
Sbjct: 533 IMAEFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHC 592

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLYHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A     
Sbjct: 593 VLLYHPPLSQIGRQRLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRD 652

Query: 653 DSLLEIARKDAKHILTQDPDLTS 675
             LL   R  A+ +L + P   S
Sbjct: 653 ADLLPAVRDAAQALLERWPQHVS 675


>gi|260774741|ref|ZP_05883644.1| ATP-dependent DNA helicase RecG [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609303|gb|EEX35455.1| ATP-dependent DNA helicase RecG [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 692

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 265/678 (39%), Positives = 397/678 (58%), Gaps = 30/678 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+      N  +  DLLF+ P  + DR     I ++       
Sbjct: 9   PLTSLTGVGAKVAEKLAKV----GLNSVQ--DLLFHLPLRYEDRTRIYPIVKLHAGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMSADTL-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFAEGKTVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL-----IEAVYSLPTGLSVDLFKKIIVEALSRL--PV 184
               + +VHP Y F+     N P      +  VY    GL     + +  +AL+ +    
Sbjct: 121 GSFGLEIVHPDYKFYAP---NQPAEVEQNLTPVYPTTDGLRQITLRNLTDQALALIDKAA 177

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240
           + E +   L  ++   S+A+A + IH P    D     E   PA+ RL  +ELLA  +++
Sbjct: 178 VQELLPSGLYNQQV--SLAQALHTIHRPTPDIDLQAFDEGKHPAQIRLIMEELLAQNLSM 235

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +R + ++++ +P+    ++ Q++L  +PFSPTK+Q   + +I QD+ + + M+R++QG
Sbjct: 236 LSVRSKGQQDVALPLAERNQLKQQLLDQLPFSPTKAQSRVVAEIEQDLEKPHPMMRLVQG 295

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G + 
Sbjct: 296 DVGSGKTLVAALAALRALEHGYQVALMAPTELLAEQHALNFAQWLEPMGINVGWLAGKLK 355

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +   L +IA G+A +++GTHALFQ+ + ++ L LVI+DEQHRFGV QRL+L +K   
Sbjct: 356 GKAKEIELAKIASGEAQMVVGTHALFQEHVIFHHLALVIIDEQHRFGVHQRLELREKGEK 415

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++
Sbjct: 416 QGAFPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVR 475

Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
              L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K+SVM
Sbjct: 476 NACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQSVM 535

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+L
Sbjct: 536 QDFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVL 595

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LYH PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+GM  F IA       
Sbjct: 596 LYHSPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGMADFKIADLIRDQH 655

Query: 655 LLEIARKDAKHILTQDPD 672
           L+   ++ A+HI    PD
Sbjct: 656 LIPEVQRVARHIHDNFPD 673


>gi|269103906|ref|ZP_06156603.1| ATP-dependent DNA helicase RecG [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163804|gb|EEZ42300.1| ATP-dependent DNA helicase RecG [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 693

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/674 (37%), Positives = 389/674 (57%), Gaps = 24/674 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  LSKI      N  +  DLLF+ P  + DR     + +I   + +T+
Sbjct: 11  VSELSGVGAKMAEKLSKI----GLNSVQ--DLLFHLPLRYEDRTRIWPMGQIKPGQHLTV 64

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +    +    KR+   + + D TG +TL FF     M KN F EGR++   G+IK+ 
Sbjct: 65  QGEVLT-CNMTFGKRKMLTVKIGDDTGAVTLRFFNFNAAM-KNSFIEGRQVKAYGEIKRG 122

Query: 133 KNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188
           +  + + HP Y +F    ++     +  VY    GL     + +  +AL  L    + E 
Sbjct: 123 QYGLEINHPDYRVFSEPTELRVEETLTPVYPTTDGLRQLTLRNLTDQALKLLDKAAVREL 182

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMR 244
           + + L  ++   ++A+A + +H P      +       PA++RL  +ELLA  +++L +R
Sbjct: 183 LPEGLYDRQM--TLAQALHTMHRPTPDISLDQLETGKHPAQQRLILEELLAQNLSMLALR 240

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            + ++    P++    + Q++L  +PF+PT++Q+  + +I  D+S    M+R++QGDVGS
Sbjct: 241 SKGQQHNSWPLSATDTLKQQLLSALPFTPTRAQQRVVAEIENDLSLTQPMMRLVQGDVGS 300

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA ++   A+E G Q  +MAP  +LA+QH      +     I V  + G +    R
Sbjct: 301 GKTLVAALSALRAIEHGYQVALMAPTELLAEQHAINFANWFNPLDIQVGWLAGKLKGKAR 360

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---- 420
            K LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL+L +K       
Sbjct: 361 EKELEKIESGSVKMVVGTHALFQEQVKFANLALVIIDEQHRFGVHQRLELREKGANDGRY 420

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVL 479
           PH L+MTATPIPRTL +T+  D+D S I E P GR PI TV +P +R D++IER++    
Sbjct: 421 PHQLVMTATPIPRTLAMTAYADMDTSIIDELPPGRTPITTVAVPDSRRDDIIERIRHACQ 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  I+E +    ++  +    L E      I ++HGRM   +K+ +M  FK
Sbjct: 481 TEGRQAYWVCTLIDESEVLEAQAASDTAADLTEKLPELKIGLVHGRMKAQEKQHIMAQFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   LL+ATTVIEVG+DV ++S+++IEN E  GLAQLHQLRGRVGRG   S C+LLY  
Sbjct: 541 AGELDLLVATTVIEVGVDVPNSSLMVIENPERLGLAQLHQLRGRVGRGNIASHCVLLYKS 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+ +F +A       ++  
Sbjct: 601 PLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGIAEFKVADLVRDQYMIPQ 660

Query: 659 ARKDAKHILTQDPD 672
            +K A++I    PD
Sbjct: 661 IQKLARYIHQNYPD 674


>gi|302133612|ref|ZP_07259602.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 691

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/683 (37%), Positives = 397/683 (58%), Gaps = 36/683 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+K+   G  N     D+LF+ P  + DR     I  +S      I
Sbjct: 9   VTALKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRIVPIGALSPGHDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188
            + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+W
Sbjct: 121 ASGLEIYHPEYRAITGDEPPPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPDW 180

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIALL 241
           + ++L +      + +A   +H+P    D +       W   A+ RLA++ELL  Q++  
Sbjct: 181 LPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLSQQ 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGD
Sbjct: 238 RLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  ++G +  
Sbjct: 298 VGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVDVAWLSGKLKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K    
Sbjct: 358 KARVTSLEQIATGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGG 416

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++ 
Sbjct: 417 LMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRA 476

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKES 532
             +EG++AYW+C  IEE +E   ++      + +E  TS+     + +IHGRM   +K +
Sbjct: 477 ACAEGRQAYWVCTLIEESEELTCKAA----ETTYEELTSALGEVRVGLIHGRMKPAEKAA 532

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M  FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C
Sbjct: 533 IMAEFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHC 592

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLYHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A     
Sbjct: 593 VLLYHPPLSQIGRQRLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRD 652

Query: 653 DSLLEIARKDAKHILTQDPDLTS 675
             LL   R  A+ +L + P   S
Sbjct: 653 ADLLPAVRDAAQALLERWPQHVS 675


>gi|308188675|ref|YP_003932806.1| ATP-dependent DNA helicase [Pantoea vagans C9-1]
 gi|308059185|gb|ADO11357.1| ATP-dependent DNA helicase [Pantoea vagans C9-1]
          Length = 692

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/679 (37%), Positives = 383/679 (56%), Gaps = 25/679 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST  GVG   +  L+KI      +     DLL + P  + DR     I ++      T
Sbjct: 10  PLSTLTGVGASQAAKLAKI------DLHTIQDLLLHLPLRYEDRTQLYAIDDLLPGIWAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  H+     +RR     ++DG+G +T+ FF     M KN    GR++T  G+IK+
Sbjct: 64  VEGEVL-HTDITFGRRRMMVCQISDGSGVLTMRFFNFNAGM-KNNLSPGRRVTAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPVLP-- 186
            +    ++HP Y     Q  N  L E    VY    G+     + +  +AL+ L   P  
Sbjct: 122 GQRGAEIIHPEYRIQGEQS-NVALEETLTPVYPTTEGIRQATLRNLTDQALTLLESCPIA 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLL 242
           E + ++L       S+ +A   +H P    R ++      PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPQEL--SGGLISLPDALRTLHRPPPDLRLSELESGRHPAQRRLILEELLAHNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   +P+     ++ ++L  +PFSPT +Q+  + +I +D++    M+R++QGDV
Sbjct: 239 VRAGAQRYYALPMTPRHNLSDQLLAALPFSPTNAQKRVVTEIEKDLANDFPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA ++    +    Q  +MAP  +LA+QH    +++     I V  + G     
Sbjct: 299 GSGKTLVAALSALNVIAHDKQVALMAPTELLAEQHASNFRQWFAPLGIEVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+   E IA GQ  +++GTHALFQ+ +Q+  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARQAQQEAIASGQVAMVVGTHALFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGEEQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R DE++ R++  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRDEIVARVEHA 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             EG++AYW+C  IEE +    ++    + SL       +I ++HGRM   +K++VM +F
Sbjct: 479 CREGRQAYWVCTLIEESELLEAQAAEASWESLKTALPDLNIGLVHGRMKPAEKQAVMQAF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K    +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 539 KANELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +++ 
Sbjct: 599 APLSKTTQKRLQVLRDSNDGFVIAQFDLEIRGPGELLGTRQTGNAEFKVADLLRDAAMVP 658

Query: 658 IARKDAKHILTQDPDLTSV 676
             ++ A+HI    P+  S 
Sbjct: 659 EVQRVARHIHQHYPEQASA 677


>gi|213970706|ref|ZP_03398831.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           T1]
 gi|301382593|ref|ZP_07231011.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059230|ref|ZP_07250771.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           K40]
 gi|213924540|gb|EEB58110.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           T1]
          Length = 691

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 256/683 (37%), Positives = 396/683 (57%), Gaps = 36/683 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+K+   G  N     D+LF+ P  + DR     I  +S      I
Sbjct: 9   VTALKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRIVPIGALSPGHDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVSG-ADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188
            + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+W
Sbjct: 121 ASGLEIYHPEYRAITGDEPPPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPDW 180

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIALL 241
           + ++L +      + +A   +H+P    D +       W   A+ RLA++ELL  Q++  
Sbjct: 181 LPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLSQQ 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGD
Sbjct: 238 RLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +  
Sbjct: 298 VGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVDVAWLAGKLKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K    
Sbjct: 358 KARVTSLEQIATGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGG 416

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++ 
Sbjct: 417 LMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRA 476

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKES 532
             +EG++AYW+C  IEE +E   ++      + +E  TS+     + +IHGRM   +K +
Sbjct: 477 ACAEGRQAYWVCTLIEESEELTCKAA----ETTYEELTSALGEVRVGLIHGRMKPAEKAA 532

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M  FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C
Sbjct: 533 IMAEFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHC 592

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLYHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A     
Sbjct: 593 VLLYHPPLSQIGRQRLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRD 652

Query: 653 DSLLEIARKDAKHILTQDPDLTS 675
             LL   R  A+ +L + P   S
Sbjct: 653 ADLLPAVRDAAQALLERWPQHVS 675


>gi|254360948|ref|ZP_04977094.1| helicase RecG [Mannheimia haemolytica PHL213]
 gi|153092427|gb|EDN73490.1| helicase RecG [Mannheimia haemolytica PHL213]
          Length = 693

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 267/682 (39%), Positives = 390/682 (57%), Gaps = 34/682 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   S  LS+I    N       DLLF+ P  + DR     I+++  E   T
Sbjct: 10  PLTALSGVGAAISEKLSRI-GINNVQ-----DLLFHLPMRYEDRTRITPIADVRPESFAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I GY+ Q +  Q  KR    + L+D T +I L FF     M KN    G ++   G+IK+
Sbjct: 64  IEGYV-QLTEVQFGKRPILSVTLSDSTSKIMLKFFNFNAGM-KNSLATGVRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFPLIEA-----VYSLPTGLSVDLFKKIIVEALSRLPVL 185
            +    + HP Y I  ++Q    PL+ A     +YS   GL     +K+  +AL+   +L
Sbjct: 122 GRFMAEIHHPEYQIIRDNQ----PLVLAETLTPIYSTTEGLKQASLRKLTEQALA---LL 174

Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQI 238
            +    +LL  +  P   S+ EA  ++H P      E       PA++RL ++ELLA  +
Sbjct: 175 EKVKVAELLPDEYNPHKYSLKEALQLLHRPPPTISAEVLEKGDHPAQKRLIFEELLAHNL 234

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           A+  +R   K++    +  +  I Q+ L ++PF PT +Q     DI QD+++ + M+R++
Sbjct: 235 AMQQLRLGVKQQYAEALTYQTDIKQRFLDSLPFKPTHAQSRVTADIEQDLAKPHPMMRLV 294

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH      +     I V  + G 
Sbjct: 295 QGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLNPFGIEVGWLAGK 354

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    R   LE I +G   +IIGTHALFQD+++++ L LVI+DEQHRFGV QRL L +K 
Sbjct: 355 VKGKARTAQLEAIKNGDVQMIIGTHALFQDNVEFHHLALVIIDEQHRFGVHQRLTLREKG 414

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                 PH L+MTATPIPRTL +T   D+D S I E P GR PI TV+I  +R  E+++R
Sbjct: 415 AKENNYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEDRRAEIVQR 474

Query: 475 L-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           + +V   E ++AYW+C  I+E +    ++       L        I ++HGR+   +K++
Sbjct: 475 VYQVCKQEHRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRLKPQEKQA 534

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M  FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C
Sbjct: 535 IMAEFKAANLDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHC 594

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +L+Y PPL K S  RL V+++++DGF IAE+DL+ R  GEILG KQ+GM +F +A     
Sbjct: 595 VLMYKPPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVADLMRD 654

Query: 653 DSLLEIARKDAKHILTQDPDLT 674
             ++ + ++ AK I++++  L 
Sbjct: 655 RKMIPLVQRYAKQIISENQPLA 676


>gi|91224993|ref|ZP_01260252.1| ATP-dependent DNA helicase RecG [Vibrio alginolyticus 12G01]
 gi|91190239|gb|EAS76509.1| ATP-dependent DNA helicase RecG [Vibrio alginolyticus 12G01]
          Length = 693

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 258/671 (38%), Positives = 395/671 (58%), Gaps = 28/671 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F +G+ +   G+IK+
Sbjct: 64  VQGKVMAVDTI-FGKRKMLTVKISDGNGTITLRFF-NFTAAMKNNFTQGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQ---DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
               + +VHP Y F+ S+   DV   L   VY    GL     + +  +AL+   +L + 
Sbjct: 122 GGMGLEIVHPDYKFYVSEQKPDVEQSLT-PVYPTTDGLRQITLRNLTEQALA---LLDKT 177

Query: 189 IEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241
             ++LL    +    ++++A + IH P    +     E   PA+ RL  +ELLA  +++L
Sbjct: 178 AVQELLPAGLYDHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R + +K+  +P+    K+  ++L  +PFSPT +Q   +++I  D+ + + M+R++QGD
Sbjct: 238 AVRSKGQKDSALPLGPCNKLKTQLLVQLPFSPTNAQTRVVQEIEADLEKPHPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +  
Sbjct: 298 VGSGKTLVAALAAVRAIEHGHQVALMAPTELLAEQHAINFANWFETMGIQVGWLAGKLKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             +   L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +K    
Sbjct: 358 KAKEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + ++++ER++ 
Sbjct: 418 GAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRNDIVERVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM 
Sbjct: 478 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 DFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YH PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L
Sbjct: 598 YHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRL 657

Query: 656 LEIARKDAKHI 666
           +   ++ A+HI
Sbjct: 658 IPEVQRIARHI 668


>gi|325577828|ref|ZP_08148103.1| DNA helicase RecG [Haemophilus parainfluenzae ATCC 33392]
 gi|325160573|gb|EGC72699.1| DNA helicase RecG [Haemophilus parainfluenzae ATCC 33392]
          Length = 693

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 260/678 (38%), Positives = 396/678 (58%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   S  LS+I   G  N     DLLF+ P  + DR     I+++  E+  T
Sbjct: 10  PLTTLSGVGAAISDKLSRI---GIHN---LQDLLFHLPIRYEDRTRITPIADLRPEQYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G + Q       +R    + L+DGT +I L FF     M KN F  G ++   G+IK+
Sbjct: 64  IEGVV-QTCEVAFGRRPILTVSLSDGTSKIMLRFFNFNAGM-KNSFQIGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y  I  N+  V    +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRFMAEIHHPEYQIIRDNAPLVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKIQ 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLL 242
             ++L  +  P   S+ +A   +H P      +       PA++RL ++ELLA  +A+  
Sbjct: 179 LTEILPNEFNPHPFSLKDAIRFLHRPPPDISLDILEKGQHPAQQRLIFEELLAHNLAMQK 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++ + +P++ +  + Q+ L ++PF PT +Q   + DI QD+++   M+R++QGDV
Sbjct: 239 VRLGTQQFLALPLHYQTDLKQRFLASLPFQPTNAQNRVVADIEQDLAKDYPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFRRWLEPFGIDVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARQAELEKIKSGAVQMVVGTHALFQEEVEFADLALVIIDEQHRFGVHQRLMLREKGEKAG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV+I   R DE++ R+K  
Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEERRDEIVARVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            ++E ++AYW+C  I+E +    ++    +  L +      I ++HGRM   +K+ +M +
Sbjct: 479 CINEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLKIGLVHGRMKPQEKQDIMAA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y
Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +F +A       ++
Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAEFKVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
              +  AK ++ + PD+ 
Sbjct: 659 PTVQHYAKALIVKYPDVA 676


>gi|330986881|gb|EGH84984.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 691

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 255/680 (37%), Positives = 393/680 (57%), Gaps = 30/680 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+K+       ET   D+LF+ P  + DR     I  +   +   I
Sbjct: 9   VTALKGVGEAMAEKLAKV-----GLET-LQDVLFHLPLRYQDRTRVVPIGALRPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
            + + + HP Y    + D   P+   +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240
           W+  +L +      + +A   +H+P    D E       W   A+ RLA++ELL  Q++ 
Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QG
Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G + 
Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K   
Sbjct: 357 GKARATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++
Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M 
Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAEKAAIMA 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LL
Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       L
Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655

Query: 656 LEIARKDAKHILTQDPDLTS 675
           L   R  A+ +L + P   S
Sbjct: 656 LPAVRDAAQALLERWPQHVS 675


>gi|28867305|ref|NP_789924.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28850539|gb|AAO53619.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 691

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 256/683 (37%), Positives = 397/683 (58%), Gaps = 36/683 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+K+   G  N     D+LF+ P  + DR     I  +S  +   I
Sbjct: 9   VTALKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRIVPIGALSPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188
            + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+W
Sbjct: 121 ASGLEIYHPEYRAITGDEPPPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPDW 180

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIALL 241
           + ++L +      + +A   +H+P    D +       W   A+ RLA++ELL  Q++  
Sbjct: 181 LPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLSQQ 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGD
Sbjct: 238 RLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +  
Sbjct: 298 VGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVDVAWLAGKLKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--- 418
             R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K    
Sbjct: 358 KARVTSLEQIATGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGIGG 416

Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++ 
Sbjct: 417 LMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRA 476

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKES 532
             +EG++AYW+C  IEE +E   ++      + +E  TS+     + +IHGRM   +K +
Sbjct: 477 ACAEGRQAYWVCTLIEESEELTCKAA----ETTYEELTSALGEVRVGLIHGRMKHAEKAA 532

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M  FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C
Sbjct: 533 IMAEFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHC 592

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLYHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A     
Sbjct: 593 VLLYHPPLSQIGRQRLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRD 652

Query: 653 DSLLEIARKDAKHILTQDPDLTS 675
             LL   R  A+ +L + P   S
Sbjct: 653 ADLLPAVRDAAQALLERWPQHVS 675


>gi|84386372|ref|ZP_00989400.1| ATP-dependent DNA helicase RecG [Vibrio splendidus 12B01]
 gi|84378796|gb|EAP95651.1| ATP-dependent DNA helicase RecG [Vibrio splendidus 12B01]
          Length = 692

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 269/682 (39%), Positives = 389/682 (57%), Gaps = 38/682 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L K+    N       DLLF+ P  + DR     I ++       
Sbjct: 9   PLNSLSGVGAKVAEKLEKV-GLNNVQ-----DLLFHLPLRYEDRTRIYPIVKLHAGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  H      KR+   + ++DG G ITL FF   T  +KN F EG+++   G+IK+
Sbjct: 63  VQGKV-MHVDTIFGKRKMLAVKISDGNGTITLRFF-NFTAGMKNNFAEGKQVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA----VYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
               + +VHP Y F   +    P +EA    VY    GL     + +  +AL       E
Sbjct: 121 GNMGLEIVHPDYKFFAPR--QQPDVEANLTPVYPTTEGLRQVTLRNLTDQAL-------E 171

Query: 188 WIEK----DLLQKKSFP---SIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAG 236
            I+K    +LL    +    ++A+A + IH P    D E       PA+ RL  +ELLA 
Sbjct: 172 LIDKAAVNELLPSGLYDHQITLAQALHTIHRPPPGIDLELFDEGKHPAQLRLIMEELLAQ 231

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            +++L +R + +++  +P      +  K+L  +PFSPT +Q    K+I  D+ + + M+R
Sbjct: 232 NLSMLSVRSKGQQDKAMPFPPVNTLKDKLLAQLPFSPTNAQVRVTKEIEADLEKPHPMMR 291

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + 
Sbjct: 292 LVQGDVGSGKTLVAALAAVRALEHGQQVALMAPTELLAEQHAINFANWFEAMGIQVGWLA 351

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G +    R   L RIA G+A +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL+L +
Sbjct: 352 GKLKGKARETELTRIASGEAQMVVGTHALFQEHVEFKNLGLVIIDEQHRFGVHQRLELRE 411

Query: 417 KATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           K       PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++
Sbjct: 412 KGAKQGYYPHQLVMTATPIPRTLAMTAYADLETSIIDELPPGRTPIQTVAIPDTKRDDIV 471

Query: 473 ERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
           ER+K   L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K
Sbjct: 472 ERVKNACLNEGKQAYWVCTLIDESEVLEAQAAADTAEDLQRKLPDVKIGLVHGRMKPAEK 531

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           ++VM  FK     LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S
Sbjct: 532 QAVMREFKENKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVAS 591

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+LLYH PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA   
Sbjct: 592 HCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLI 651

Query: 651 LHDSLLEIARKDAKHILTQDPD 672
               L+   ++ A+HI    PD
Sbjct: 652 RDQRLIPEVQRIARHIHDSYPD 673


>gi|66043471|ref|YP_233312.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. syringae
           B728a]
 gi|289672854|ref|ZP_06493744.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. syringae
           FF5]
 gi|63254178|gb|AAY35274.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. syringae
           B728a]
          Length = 691

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 255/680 (37%), Positives = 394/680 (57%), Gaps = 30/680 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+K+       ET   D+LF+ P  + DR     I  +   +   I
Sbjct: 9   VTALKGVGEAMAEKLAKV-----GLET-LQDVLFHLPLRYQDRTRIVPIGALRPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
            + + + HP Y    + D   P+   +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240
           W+ ++L +      + +A   +H+P    D E       W   A+ RLA++ELL  Q++ 
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QG
Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G + 
Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K   
Sbjct: 357 GKARVASLEQIAGGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++
Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M 
Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMA 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LL
Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       L
Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655

Query: 656 LEIARKDAKHILTQDPDLTS 675
           L   R  A+ +L + P   S
Sbjct: 656 LPAVRDAAQALLERWPQHVS 675


>gi|71733507|ref|YP_272494.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554060|gb|AAZ33271.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322268|gb|EFW78364.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331916|gb|EFW87854.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 691

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 255/680 (37%), Positives = 393/680 (57%), Gaps = 30/680 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+++       ET   D+LF+ P  + DR     I  +   +   I
Sbjct: 9   VTALKGVGEAMAEKLARV-----GLET-LQDVLFHLPLRYQDRTRVVPIGALRPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   I L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVS-GADVVMGKRRSLLIRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
            + + + HP Y    + D   P+   +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240
           W+  +L +      + +A   +H+P    D E       W   A+ RLA++ELL  Q++ 
Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QG
Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G + 
Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K   
Sbjct: 357 GKARATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++
Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M 
Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAEKAAIMA 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LL
Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       L
Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655

Query: 656 LEIARKDAKHILTQDPDLTS 675
           L   R  A+ +L + P   S
Sbjct: 656 LPAVRDAAQALLERWPQHVS 675


>gi|165924238|ref|ZP_02220070.1| ATP-dependent DNA helicase RecG [Coxiella burnetii RSA 334]
 gi|165916317|gb|EDR34921.1| ATP-dependent DNA helicase RecG [Coxiella burnetii RSA 334]
          Length = 581

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/535 (44%), Positives = 344/535 (64%), Gaps = 28/535 (5%)

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
           +Y    GLS   ++ +I ++L+ L        +LPE I   L      P++ EA   +H+
Sbjct: 39  IYPTTKGLSQTKWRHLINQSLNYLKDPNFVEELLPEEIRTPL----RLPTLTEALFYVHS 94

Query: 212 PRKAKDFEWTS----PARERLAYDELLAGQIAL----LLMRKQFKKEIGIPINVEGKIAQ 263
           P      +       P+++RLA++EL+A Q+ L    LL+R Q       PI ++    +
Sbjct: 95  PPHNAPVDLLQASKHPSQQRLAFEELVAQQLGLQQWRLLIRTQ-----PAPILIKNNWQE 149

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           K+ R + F  T +Q+  I +I QD+S+   MLR+LQGDVGSGKT+VA +A+  AVE G Q
Sbjct: 150 KLKRALTFELTSAQKRVIGEINQDLSKPKPMLRLLQGDVGSGKTIVAAMAILKAVENGYQ 209

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           + IMAP  +LA+QHY+  +++     I V  + G++  + R K L+ IA GQ  +IIGTH
Sbjct: 210 SAIMAPTELLAEQHYQVFQRWFSPLGIRVGWLAGSLTPSAREKTLQEIASGQLSVIIGTH 269

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSL 440
           ALFQ ++ + +L  +++DEQHRFGV QRL L +KAT    PH L+MTATPIPRTL +T+ 
Sbjct: 270 ALFQAAVTFQQLAFIVIDEQHRFGVHQRLALKEKATPNYHPHQLIMTATPIPRTLAMTAY 329

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D+D S I E+P GRKPI TV+I  +R D+VIER+K    +GK+ YW+C  I + +    
Sbjct: 330 ADLDFSIIDEQPPGRKPITTVLISNSRRDKVIERIKKNCEQGKQVYWVCTLITDSEVLQC 389

Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +    F  L + FT+ S+ +IHGR++  +K+ VM +FKNG   LL+ATTVIEVG+DV +
Sbjct: 390 ETAEATFKKLQQSFTNLSVGLIHGRLTKEEKDVVMGAFKNGDIDLLVATTVIEVGVDVPN 449

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           AS+++IEN+E  GLAQ+HQLRGRVGRGE+ S C+LLY  PLSKN+  RL++L++T+DGFL
Sbjct: 450 ASLMVIENSERLGLAQIHQLRGRVGRGEQKSYCVLLYQEPLSKNARARLTLLRDTQDGFL 509

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           +A++DL+ R  GE+LG +QSG+ +F IA    H  LL   RK A  IL +  + T
Sbjct: 510 VAQKDLELRGPGELLGARQSGLFRFRIADVIRHQHLLPAVRKAAFLILRRYSEFT 564


>gi|159028665|emb|CAO88136.1| recG [Microcystis aeruginosa PCC 7806]
          Length = 822

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 250/684 (36%), Positives = 404/684 (59%), Gaps = 29/684 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL     VG++ +  L ++      N  +  DLL+Y+P   +D   +  I+ ++E   VT
Sbjct: 128 PLKYLAEVGERKASLLERL------NLHKVEDLLYYYPRDHVDYSRQVNIANLTEGETVT 181

Query: 72  ITGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK------ 122
           + G + + + F   K      +++LL D TG+I L  FY  T      + EG+K      
Sbjct: 182 LVGNVKRCNCFNSPKNTKLAIFELLLQDRTGQIKLNRFYAGTRYNNRAWQEGQKKLYPVG 241

Query: 123 --ITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFKKII 175
             + V+G +K  K  + + +P +   +S     + +    I  VY L  G+  DL +K +
Sbjct: 242 SVVAVSGLVKAGKYGLTLENPEFELLDSSGGSIESLKIGRILPVYPLTDGVPADLIRKAV 301

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           V A   +  + + +   L ++     +  A   IH P  +   +  S AR RL +DE   
Sbjct: 302 VTAFGAVEAIKDPLPFGLKKQYGLIDLKTAITNIHFPNNS---DILSQARRRLVFDEFFF 358

Query: 236 GQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
            Q+  L  R+Q+++     I + +G++  +  + IPF  T +Q+  I++IL+D+     M
Sbjct: 359 LQLGFLRRRQQYRQTQKSAIFSAKGQLIDQFNQIIPFQLTNAQKRVIEEILEDLDSSTPM 418

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++QGDVGSGKT+V + A+ AA+++G QA +MAP  +LA+QHY  +  +     + VE+
Sbjct: 419 NRLVQGDVGSGKTIVGVYAILAALQSGYQAALMAPTEVLAEQHYRKLVSWFNLLHLPVEL 478

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+   A RR+   ++  G+  +++GTHAL QD++ + KL LV++DEQHRFGVQQR +L
Sbjct: 479 LTGSTKTAKRREIHAQLETGELPLLVGTHALIQDAVNFRKLGLVVIDEQHRFGVQQRARL 538

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K  +PHVL MTATPIPRTL LT  GD+D+S+I E P GR+PI+T  +  N+     + 
Sbjct: 539 LSKGESPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQPIQTTALNGNQRRAAYDL 598

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKES 532
           ++  +++G++AY I P IEE ++ + R+ VE + +L E      +I ++HGRMS  +KE 
Sbjct: 599 IRREIAQGRQAYVIFPLIEESEKLDVRAAVEEYQNLSEKIFPNFNIGLLHGRMSSAEKEE 658

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           ++ +F++   +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   S C
Sbjct: 659 ILTAFRDNILQIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGSHQSYC 718

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LL     S NS  RL+VL+ ++DGF I+E D++ R  GE+LG +QSG+P F +A     
Sbjct: 719 LLLSGSN-SANSRQRLTVLEQSQDGFFISEMDMRFRGPGEVLGQRQSGLPDFALASLVED 777

Query: 653 DSLLEIARKDAKHILTQDPDLTSV 676
             +L +AR  A+ I+  DP L ++
Sbjct: 778 QEVLVLARDAAEKIMLDDPHLITL 801


>gi|330952140|gb|EGH52400.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae Cit 7]
          Length = 691

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 255/680 (37%), Positives = 393/680 (57%), Gaps = 30/680 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+K+       ET   D+LF+ P  + DR     I  +   +   I
Sbjct: 9   VTALKGVGEAMAEKLAKV-----GLET-LQDVLFHLPLRYQDRTRIVPIGALRPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
            + + + HP Y    + D   P+   +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240
           W+  +L +      + +A   +H+P    D E       W   A+ RLA++ELL  Q++ 
Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QG
Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G + 
Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K   
Sbjct: 357 GKARVASLEQIAGGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++
Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M 
Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMA 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LL
Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       L
Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655

Query: 656 LEIARKDAKHILTQDPDLTS 675
           L   R  A+ +L + P   S
Sbjct: 656 LPAVRDAAQALLERWPQHVS 675


>gi|257481743|ref|ZP_05635784.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330890912|gb|EGH23573.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. mori str.
           301020]
          Length = 691

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/680 (37%), Positives = 393/680 (57%), Gaps = 30/680 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+++       ET   D+LF+ P  + DR     I  +   +   I
Sbjct: 9   VTALKGVGEAMAEKLARV-----GLET-LQDVLFHLPLRYQDRTRVVPIGALRPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
            + + + HP Y    + D   P+   +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240
           W+  +L +      + +A   +H+P    D E       W   A+ RLA++ELL  Q++ 
Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QG
Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G + 
Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K   
Sbjct: 357 GKARATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++
Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M 
Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAEKAAIMA 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LL
Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       L
Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655

Query: 656 LEIARKDAKHILTQDPDLTS 675
           L   R  A+ +L + P   S
Sbjct: 656 LPAVRDAAQALLERWPQHVS 675


>gi|118580930|ref|YP_902180.1| ATP-dependent DNA helicase RecG [Pelobacter propionicus DSM 2379]
 gi|118503640|gb|ABL00123.1| ATP-dependent DNA helicase RecG [Pelobacter propionicus DSM 2379]
          Length = 778

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 258/701 (36%), Positives = 394/701 (56%), Gaps = 40/701 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSK-IINCGNANETRFIDLLFYHPSSFIDRH-------YRPK 60
           L  P+ + +GVG K S  L++  I C         D L+  P+ + DR         RP 
Sbjct: 74  LETPMHSVKGVGPKLSALLARRGIAC-------VEDALYLLPNRYEDRRELRPIAALRPG 126

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
            +E+   R+++     S+        RR ++ LL D +  +TL +F      +K V+ +G
Sbjct: 127 FNELFSGRVLSAESVTSRGG------RRFFEALLADDSATVTLKWFNCNPTFMKRVWKQG 180

Query: 121 RKITVTGKIKKLKNRIIMVHP--HYIFHNSQD--------VNFPLIEAVYSLPTGLSVDL 170
           R+  VTG++ +  +++ + HP   ++   S+         +NF  I  VY L  GLS  +
Sbjct: 181 RRALVTGEVSRFASQLEVHHPDVEWLAEGSEPRDLLSADPLNFGGIIPVYPLTEGLSQKV 240

Query: 171 FKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP---RKAKDFEWTSPARE 226
            ++++ E + R +P + E +  +LL++   P +  +   +H P    +  D      A  
Sbjct: 241 MRRVMREVVERFIPFVRELVPPELLERLGLPGLRHSLGHLHTPPVDERLDDLNGGCSAAH 300

Query: 227 R-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           R +A+DE    ++ L L R     E GI   V     + ++R +PF  T++Q   + +I 
Sbjct: 301 RAIAFDEFFFWELGLALKRCGVTLEEGIAFQVNHLYTKPLVRMLPFQLTRAQRRVLSEIK 360

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
           QDM   + M R++QGDVGSGKTLVAL+A   AVE G Q  IMAP  ILA+QH+  I ++ 
Sbjct: 361 QDMMAPHPMHRLVQGDVGSGKTLVALMAALVAVENGYQVAIMAPTEILAEQHWHTIHRWC 420

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
            +  I   +IT  M    +  AL R+A G A I+IGTHA+ Q+ +++ +L L I+DEQHR
Sbjct: 421 ADLGIATVLITAGMRGREKSDALGRVADGSARIVIGTHAVIQEKVEFARLGLGIIDEQHR 480

Query: 406 FGVQQR--LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           FGV QR  L+   K   P +L+MTATPIPRTL +T  GD+ +S I E P GR P++T + 
Sbjct: 481 FGVLQRAILRKKGKGCNPDILVMTATPIPRTLAMTLFGDLSLSVIDELPPGRTPVETRVT 540

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAII 521
           P ++   V + ++  + +G++AY + P +EE + S  ++  +    L +       + ++
Sbjct: 541 PESQRVRVYDTIRREVGQGRQAYVVYPLVEENERSELKAAAQMAEQLGKEIFPDLRVGLL 600

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HGRM+  +KESVM SFK     +L++TTVIEVGIDV +A++++IE+AE FGL+QLHQLRG
Sbjct: 601 HGRMNPQEKESVMASFKARELDILVSTTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRG 660

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           RVGRG   S CIL+ +   S++   RL V++ T DGF IAE DL+ R  G+ LG +QSGM
Sbjct: 661 RVGRGAARSRCILMTNGRPSEDGERRLKVMEATNDGFRIAEADLEIRGPGDFLGTRQSGM 720

Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           P F +A      +LLE AR+ A  +L QDP L S     +R
Sbjct: 721 PDFRVANILRDGALLEQARQAAFGLLEQDPGLASSGNAPLR 761


>gi|330876520|gb|EGH10669.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964238|gb|EGH64498.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 691

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 255/683 (37%), Positives = 397/683 (58%), Gaps = 36/683 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+K+   G  N     D+LF+ P  + DR     I  +S  +   I
Sbjct: 9   VTALKGVGEAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRIVPIGALSPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188
            + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+W
Sbjct: 121 ASGLEIYHPEYRAITGDEPPPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPDW 180

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIALL 241
           + ++L +      + +A   +H+P    D +       W   A+ RLA++ELL  Q++  
Sbjct: 181 LPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLSQQ 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R+  + +    + +  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGD
Sbjct: 238 RLRESLRSQRAPALPLAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +  
Sbjct: 298 VGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K    
Sbjct: 358 KARIASLEQIATGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGG 416

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++ 
Sbjct: 417 LMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRA 476

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKES 532
             +EG++AYW+C  IEE +E   ++      + +E  TS+     + +IHGRM   +K +
Sbjct: 477 ACAEGRQAYWVCTLIEESEELTCKAA----ETTYEELTSALGEVRVGLIHGRMKPAEKAA 532

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M  FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C
Sbjct: 533 IMAEFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHC 592

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLYHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A     
Sbjct: 593 VLLYHPPLSQIGRQRLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRD 652

Query: 653 DSLLEIARKDAKHILTQDPDLTS 675
             LL   R  A+ +L + P   S
Sbjct: 653 ADLLPAVRDAAQTLLERWPQHVS 675


>gi|54294931|ref|YP_127346.1| ATP-dependent DNA helicase RecG [Legionella pneumophila str. Lens]
 gi|53754763|emb|CAH16250.1| ATP-dependent DNA helicase RecG [Legionella pneumophila str. Lens]
          Length = 690

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/668 (38%), Positives = 385/668 (57%), Gaps = 30/668 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           GVG   +   +K+  CG        DLLF+ P  + DR     I ++       I G++ 
Sbjct: 11  GVGPTIA---AKLAKCGIFT---IQDLLFHLPYKYQDRTRITPIQDLRSNEWCVIAGHVC 64

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
           + +  +  KR      + D TG + L FF+   + ++        I   G+++   N++ 
Sbjct: 65  K-TEIKYGKRMMLNCYVEDKTGVVKLRFFHFNKQQIQ-ALNNSAMIRAFGEVRGFNNQLE 122

Query: 138 MVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSR----LPVLPEWIE 190
           M+HP Y   N Q+ +F + E    +Y    GL+    ++++  AL +    L  L EW+ 
Sbjct: 123 MIHPEYQLIN-QESDFHVEETLTPIYPSTQGLTQTRLRQLVKIALEQSEHELHQL-EWMS 180

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAGQIALLLMR 244
           +  LQ+ +F  + EA  ++HNP    D   ++      PA +RL +DELLA Q+++   R
Sbjct: 181 EKQLQENNFYDLGEAIKLLHNP--PPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFAR 238

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +   K     I  +  I ++ + ++PFS T +Q+   K+I  D++Q   MLR+LQGDVG+
Sbjct: 239 QSRSKLQAPAIFFDNAIHKRFIESLPFSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVGA 298

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++A +A   A+  G Q   MAP  +L++QH   + K+ +   I V  ++G M    R
Sbjct: 299 GKTIIAALAALQAISQGFQVAFMAPTDLLSEQHTNSLGKWLEPIGINVLRLSGKMKTTER 358

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---- 420
           + AL  +      +I+GTHALFQ+ +++ +L LVI+DEQHRFGV+QRL L QK       
Sbjct: 359 KNALAALQDNSCKLIVGTHALFQEQVEFARLGLVIIDEQHRFGVEQRLLLQQKGQLNQLI 418

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH LLMTATPIPRTL ++    +DIS I E P GR PI T ++  ++ + +IERL+  +S
Sbjct: 419 PHQLLMTATPIPRTLSMSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAIS 478

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKN 539
            GK+AYW+C  IEE ++    +  +    L E  + + + ++HGRM   +KE+ M +FK 
Sbjct: 479 NGKQAYWVCTLIEESEKLQCMAATDTSKKLQEQLSFARVGLVHGRMKAFEKEATMAAFKQ 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+LLY  P
Sbjct: 539 GEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSP 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RL ++++T DGFLI+E+DL+ R  GEILG KQ+G  +F IA  +   +L  I 
Sbjct: 599 LSQQGAERLKIMRSTTDGFLISEKDLELRGSGEILGTKQTGFRQFKIANLQRDKTLFTIL 658

Query: 660 RKDAKHIL 667
           R  AK ++
Sbjct: 659 RPIAKQLV 666


>gi|326423778|ref|NP_759830.2| ATP-dependent DNA helicase RecG [Vibrio vulnificus CMCP6]
 gi|319999140|gb|AAO09357.2| ATP-dependent DNA helicase RecG [Vibrio vulnificus CMCP6]
          Length = 693

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 259/651 (39%), Positives = 387/651 (59%), Gaps = 26/651 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L KI        +   DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLEKI------GLSSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G++ Q  +    KR+   + L+DG G ITL FF   T  +KN F EG+ +   G+IK+
Sbjct: 64  VQGHVMQVDTL-FGKRKMLTVKLSDGNGTITLRFF-NFTAAMKNNFAEGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + +VHP Y F       DV   L   VY    GL     + +  +A++ L    + 
Sbjct: 122 GNMGLEIVHPDYKFFAPTQKPDVEQSLT-PVYPTTDGLRQITLRNLTDQAIALLDKAAVQ 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIALLL 242
           E +   L  ++   ++ +A +IIH P    + E       PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPAGLYDQQL--TMGQALHIIHRPSPEINLELFDEGKHPAQVRLIMEELLAQNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R + ++++ +P+    ++ Q++L  +PFSPT +Q   +++I +D+ + + M+R++QGDV
Sbjct: 239 VRSKGQQDVALPLPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDLQKAHPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +   
Sbjct: 299 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIPVGWLAGKLKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            +   L RIA G+A +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K     
Sbjct: 359 AKEAELARIASGEAKMVVGTHALFQEHVVFDHLALVIIDEQHRFGVHQRLELREKGAKQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + ++++ER++  
Sbjct: 419 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERIRHA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM +
Sbjct: 479 CLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVRIGLVHGRMKPAEKQAVMQA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           H PLSK +  RLSVL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA
Sbjct: 599 HAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIA 649


>gi|330972219|gb|EGH72285.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 691

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 256/680 (37%), Positives = 393/680 (57%), Gaps = 30/680 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+K+       ET   D+LF+ P  + DR     I  +   +   I
Sbjct: 9   VTALKGVGEAMAEKLAKV-----GLET-LQDVLFHLPLRYQDRTRIVPIGALRPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
            + + + HP Y    + D   P+   +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240
           W+ ++L +      + +A   +H+P    D E       W   A+ RLA++ELL  Q++ 
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R+  + +    + V  K+ ++ L N+ F+PT +Q+   K+I  D+SQ   MLR +QG
Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEIAYDLSQPEPMLRPIQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G + 
Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K   
Sbjct: 357 GKARVASLEQIAGGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++
Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M 
Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMA 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LL
Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       L
Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655

Query: 656 LEIARKDAKHILTQDPDLTS 675
           L   R  A+ +L + P   S
Sbjct: 656 LPAVRDAAQALLERWPQHVS 675


>gi|261494245|ref|ZP_05990744.1| helicase RecG [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310097|gb|EEY11301.1| helicase RecG [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 693

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 266/682 (39%), Positives = 389/682 (57%), Gaps = 34/682 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   S  LS+I    N       DLLF+ P  + DR     I+++  E   T
Sbjct: 10  PLTALSGVGAAISEKLSRI-GINNVQ-----DLLFHLPMRYEDRTRITPIADVRPESFAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I GY+ Q +  Q  KR    + L+D T +I L FF     M KN    G ++   G+IK+
Sbjct: 64  IEGYV-QLTEVQFGKRPILSVTLSDSTSKIMLKFFNFNAGM-KNSLATGVRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFPLIEA-----VYSLPTGLSVDLFKKIIVEALSRLPVL 185
            +    + HP Y I  ++Q    PL+ A     +YS   GL     +K+  +AL+   +L
Sbjct: 122 GRFMAEIHHPEYQIIRDNQ----PLVLAETLTPIYSTTEGLKQASLRKLTEQALA---LL 174

Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQI 238
            +    +LL  +  P   S+ EA  ++H P      E       PA++RL ++ELLA  +
Sbjct: 175 EKVKVAELLPDEYNPHKYSLKEALQLLHRPPPTISAEVLEKGDHPAQKRLIFEELLAHNL 234

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           A+  +R   K++    +  +  I Q+ L ++PF PT +Q     DI QD+++ + M+R++
Sbjct: 235 AMQQLRLGVKQQYAEALTYQTDIKQRFLDSLPFKPTHAQSRVTADIEQDLAKPHPMMRLV 294

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH      +     I V  + G 
Sbjct: 295 QGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLNPFGIEVGWLAGK 354

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    R   LE I +G   +IIGTHALFQD+++++ L LVI+DEQHRFGV QRL L +K 
Sbjct: 355 VKGKARTAQLEAIKNGDVQMIIGTHALFQDNVEFHHLALVIIDEQHRFGVHQRLTLREKG 414

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                 PH L+MTATPIPRTL +T   D+D S I E P GR PI TV+I  +R  E+++R
Sbjct: 415 AKENNYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEDRRAEIVQR 474

Query: 475 L-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           + +    E ++AYW+C  I+E +    ++       L        I ++HGR+   +K++
Sbjct: 475 VYQACKQEHRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRLKPQEKQA 534

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M  FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C
Sbjct: 535 IMAEFKAANLDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHC 594

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +L+Y PPL K S  RL V+++++DGF IAE+DL+ R  GEILG KQ+GM +F +A     
Sbjct: 595 VLMYKPPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVADLMRD 654

Query: 653 DSLLEIARKDAKHILTQDPDLT 674
             ++ + ++ AK I++++  L 
Sbjct: 655 RKMIPLVQRYAKQIISENQPLA 676


>gi|289625459|ref|ZP_06458413.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330866514|gb|EGH01223.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 691

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/680 (37%), Positives = 393/680 (57%), Gaps = 30/680 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+++       ET   D+LF+ P  + DR     I  +   +   I
Sbjct: 9   VTALKGVGEAMAEKLARV-----GLET-LQDVLFHLPLRYQDRTRVVPIGALRPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
            + + + HP Y    + D   P+   +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240
           W+  +L +      + +A   +H+P    D E       W   A+ RLA++ELL  Q++ 
Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QG
Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G + 
Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K   
Sbjct: 357 GKARATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++
Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPLGRTPVNTVLVADSRRLEVVERVR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M 
Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEIRVGLIHGRMKPAEKAAIMA 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LL
Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       L
Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655

Query: 656 LEIARKDAKHILTQDPDLTS 675
           L   R  A+ +L + P   S
Sbjct: 656 LPAVRDAAQALLERWPQHVS 675


>gi|237797799|ref|ZP_04586260.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331020649|gb|EGI00706.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 691

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 253/680 (37%), Positives = 394/680 (57%), Gaps = 30/680 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG   +  L+K+   G  N     D+LF+ P  + DR     I  +   +   I
Sbjct: 9   VTALKGVGDAMAEKLAKV---GLEN---LQDVLFHLPLRYQDRTRIVPIGALRPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
            + + + HP Y    + D   P+   +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240
           W+ ++L +      + +A   +H+P    D +       W   A+ RLA++ELL  Q++ 
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLSQ 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R+  + +    + +  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QG
Sbjct: 237 QRLRESLRSQRAPALPLAKKLPKQFLANLGFTPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G + 
Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K   
Sbjct: 357 GKARVTSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++
Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM  ++K ++M 
Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPVEKAAIMA 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LL
Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       L
Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655

Query: 656 LEIARKDAKHILTQDPDLTS 675
           L   R  A+ +L + P   S
Sbjct: 656 LPAVRDAAQALLERWPQHVS 675


>gi|289646385|ref|ZP_06477728.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 691

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/680 (37%), Positives = 393/680 (57%), Gaps = 30/680 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+++       ET   D+LF+ P  + DR     I  +   +   I
Sbjct: 9   VTALKGVGEAMAEKLARV-----GLET-LQDVLFHLPLRYQDRTRVVPIGALRPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
            + + + HP Y    + D   P+   +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240
           W+  +L +      + +A   +H+P    D E       W   A+ RLA++ELL  Q++ 
Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QG
Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G + 
Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K   
Sbjct: 357 GKARATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++
Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPLGRTPVNTVLVADSRRLEVVERVR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M 
Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAEKAAIMA 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LL
Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       L
Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655

Query: 656 LEIARKDAKHILTQDPDLTS 675
           L   R  A+ +L + P   S
Sbjct: 656 LPAVRDAAQALLERWPQHVS 675


>gi|294651650|ref|ZP_06728954.1| ATP-dependent DNA helicase RecG [Acinetobacter haemolyticus ATCC
           19194]
 gi|292822499|gb|EFF81398.1| ATP-dependent DNA helicase RecG [Acinetobacter haemolyticus ATCC
           19194]
          Length = 681

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 258/655 (39%), Positives = 390/655 (59%), Gaps = 47/655 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLF+ P  + DR     ++++   R   + G + +   F   K++    LL D  G++T
Sbjct: 28  DLLFHLPRDYEDRSTIIPMNQLMVGRSYLLEGEV-RSIDFPPGKKKSLAALLQDDFGKVT 86

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP--HYIFHNSQDVNFPL----I 156
           L F Y   + L +    G ++ + G+++     + + HP    I  ++     PL    +
Sbjct: 87  LRF-YHIYKGLTDRIQVGNRLRIFGEVRVGARGLELYHPEIQVILQHT-----PLPKTQL 140

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
            A+Y    GL+    ++ + +AL+        +LP        +  +   + +A + IH 
Sbjct: 141 TAIYPSTEGLTQPKLREYVRQALAHHSDDLAELLPS-------KYSNGYELKQALHYIHE 193

Query: 212 PRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI-AQKIL 266
           P    +     + + PA++RL ++EL+A QI+LL  R+ + ++I  P     K+ A+++L
Sbjct: 194 PPIDANMLQLNQGSHPAQQRLIFEELVAHQISLL-TRRAYIRQIAAPQFTSSKVLAKQLL 252

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            ++PF  T +Q+   K+ILQD+ Q+  MLR++QGDVG+GKTLVA IA   A+EA  Q  +
Sbjct: 253 ESLPFQMTNAQKRVSKEILQDLKQQQPMLRLVQGDVGAGKTLVAAIAACHALEAEWQVAL 312

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  ILA+QHY   K++ +   I V  ++G      R +A + I  G + +I+GTHALF
Sbjct: 313 MAPTEILAEQHYLNFKRWFEPLGIDVAWLSGKQKGKARTQAEQHIREGHSQLIVGTHALF 372

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDI 443
           QD++ + KL LVI+DEQHRFGV QRL L  K      PH L+MTATPIPRTL +++ GD+
Sbjct: 373 QDNVAFSKLGLVIIDEQHRFGVDQRLALRNKGADQFTPHQLVMTATPIPRTLAMSAYGDL 432

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------- 496
           D S I E P GR PI+TV IP++R +EV++R+     EGK+AYW+C  +E+ +       
Sbjct: 433 DTSVIDELPPGRTPIQTVTIPLDRREEVLQRIAQNCREGKQAYWVCTLVEQSETLDAQAA 492

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           E+ ++ + ERF  L      ++ ++HG+M   +K++VM +FK+   +LLIATTVIEVG+D
Sbjct: 493 EATYQEIKERFPDL------NVGLVHGKMKADEKQAVMQAFKDNQLQLLIATTVIEVGVD 546

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +ASI++IENAE  GL+QLHQLRGRVGRG   S C LLY  PLS+N   RLS+L+ + D
Sbjct: 547 VPNASIMVIENAERLGLSQLHQLRGRVGRGATASFCALLYKTPLSQNGQERLSILRESND 606

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           GF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A   A+ IL   P
Sbjct: 607 GFVIAEKDLEIRGPGELLGTKQTGDMGFRVARLERDDHLLTQAHYVAEQILKDYP 661


>gi|91763276|ref|ZP_01265240.1| ATP-dependent DNA helicase recG [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717689|gb|EAS84340.1| ATP-dependent DNA helicase recG [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 683

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 260/684 (38%), Positives = 410/684 (59%), Gaps = 24/684 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L A L+   GVGKK    L K             DLL+  P S+ DR    K+ ++    
Sbjct: 10  LLADLTKLNGVGKKTMEILKK------KKVNNIFDLLWRLPKSYTDRTLVSKVCDLQIGV 63

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I TI   +     F   +  P ++   D TG+I  +FF      ++ +     ++T++GK
Sbjct: 64  IQTIR-IVPLKYQFPRVRNLPNRVNCIDETGKIDCIFFNSHEGYVRKILPLNEEVTISGK 122

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV---YSLPTGLSVDLFKKIIVEALSRLPVL 185
           I   K R  + +P YI   SQD    LIE +   Y+L  G++   + KII + L  LP+L
Sbjct: 123 IGNYKGRYQITNPTYI---SQDS--SLIENIDNKYTLTEGITEKTYNKIINQILKNLPIL 177

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PEW +KD+L+  +  S  E+   +H+P+  ++++  S   +RLAYDE+LA  +    +RK
Sbjct: 178 PEWHDKDILKIFNNESWNESIIKLHDPKNIENYK--SDFYKRLAYDEILASFLVNSEIRK 235

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + KK   I  N   K  + I+  + F+ T  Q+ ++ DI +D++ K++M R+LQGDVGSG
Sbjct: 236 KIKKIKKISKNFSEKAHKNIVNKLNFTLTNDQKISLGDINKDLNSKSKMFRLLQGDVGSG 295

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VALI+    + +G Q  +MAP  ILA+QHY   KK      I +E+++     + ++
Sbjct: 296 KTIVALISSLNVINSGFQVALMAPTEILARQHYTLAKKLFP-KDIKIELLSSKSENSEKK 354

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVL 424
           + ++++ + +  ++ GTHA+FQ  I +  L  +I+DEQH+FGV+QR  L+ K      VL
Sbjct: 355 RIIKKLENNEIQMVFGTHAIFQKKIIFANLGYIIIDEQHKFGVRQRKLLSDKGGDNCDVL 414

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           LM+ATPIPRTL ++  GD+D+S I EKP+ RK +KT     ++ID+VI  +K  ++EG +
Sbjct: 415 LMSATPIPRTLTMSVYGDMDVSIIKEKPSNRKEVKTYSKLESKIDDVINFVKKEINEGNQ 474

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +W+CP IEE K+ + +S V ++  L+E F + +A++HG++ + +KE +++ F N    +
Sbjct: 475 IFWVCPLIEESKKLDHQSSVTKYKFLNEIFPNKVALLHGKIENEEKEEILNKFLNKKYSI 534

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TT+IEVGID  +A++IIIENA  FGL+QLHQLRGRVGRG + +SCIL++   LS N+
Sbjct: 535 LVSTTIIEVGIDFPNANVIIIENANKFGLSQLHQLRGRVGRGTKQASCILMFKSNLSVNA 594

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+++LKN+ DGF I+EED+K R  G++LG KQSG+  F +A P  ++ L  +A K  K
Sbjct: 595 KKRINILKNSNDGFEISEEDMKLRGFGDLLGFKQSGIKNFRLADPIQNEDLFLMAEKQIK 654

Query: 665 HILTQDPDLTSVRGQSIRILLYLY 688
            I  ++ D+   +      LL LY
Sbjct: 655 RIELENTDIKKYKA-----LLKLY 673


>gi|262373537|ref|ZP_06066815.1| ATP-dependent DNA helicase RecG [Acinetobacter junii SH205]
 gi|262311290|gb|EEY92376.1| ATP-dependent DNA helicase RecG [Acinetobacter junii SH205]
          Length = 681

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 253/646 (39%), Positives = 385/646 (59%), Gaps = 29/646 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLF+ P  + DR     ++++   R   + G + +   F   K++ +  LL D  G++T
Sbjct: 28  DLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGEV-KSIDFPPGKKKSFAALLQDDFGKVT 86

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH-YIFHNSQDVNFPLIEAVYS 161
           L F Y   + L +    G ++ + G+++     + + HP   +      +    + A+Y 
Sbjct: 87  LRF-YHIYKGLTDRIKPGARLRIFGEVRVGARGLELYHPEIQVIQRHTALPKTQLTAIYP 145

Query: 162 LPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF-- 218
              GL+    ++ + +AL      LPE +     +  +   + EA + IH P    +   
Sbjct: 146 STEGLTQPKLREYVRQALEHHSDALPELLPA---KYSNGYELKEALHYIHEPPIDANMVQ 202

Query: 219 --EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI-AQKILRNIPFSPTK 275
             + + PA++RL ++EL+A QI+LL  R+ + ++I  P     K+ A+++L  +PF  T 
Sbjct: 203 LNQGSHPAQQRLIFEELVAHQISLL-TRRAYIRQIAAPRFSSSKVLAKRLLDALPFQMTN 261

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q+   K+IL D+ Q   MLR++QGDVG+GKTLVA +A   A+EA  Q  +MAP  ILA+
Sbjct: 262 AQKRVSKEILHDLKQDQPMLRLVQGDVGAGKTLVAAVAACHALEAEWQVALMAPTEILAE 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY   K++ +   I V  ++G      R  A + I  G + +++GTHALFQ+++++ KL
Sbjct: 322 QHYLNFKRWFEPLGIKVAWLSGKQKGKARTLAEQEIKEGHSQLVVGTHALFQNNVEFSKL 381

Query: 396 ILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            LVI+DEQHRFGV QRL L  K      PH L+MTATPIPRTL +++ GD+D S I E P
Sbjct: 382 GLVIIDEQHRFGVDQRLALRNKGVDQFTPHQLVMTATPIPRTLAMSAYGDLDTSIIDELP 441

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-------ESNFRSVVE 505
            GR PI+TV IP++R +EV++R+     EGK+AYW+C  +E+ +       E+ F+ + E
Sbjct: 442 PGRTPIQTVTIPLDRREEVLQRIASNCREGKQAYWVCTLVEQSETLDAQAAEATFQEIKE 501

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           RF  L      ++ ++HG+M   +K++VM +FK+   +LLIATTVIEVG+DV +ASI++I
Sbjct: 502 RFPDL------NVGLVHGKMKADEKQAVMQAFKDNQSQLLIATTVIEVGVDVPNASIMVI 555

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           ENAE  GL+QLHQLRGRVGRG   S C LLY  PLS+N   RLS+L+ + DGF+IAE+DL
Sbjct: 556 ENAERLGLSQLHQLRGRVGRGATASFCALLYKTPLSQNGQERLSILRESNDGFVIAEKDL 615

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           + R  GE+LG KQ+G   F +A+ E  D LL  A   A+ +L   P
Sbjct: 616 EIRGPGELLGTKQTGDMGFRVARLERDDHLLTQAHYVAEQLLKDYP 661


>gi|153947523|ref|YP_001399038.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis IP
           31758]
 gi|152959018|gb|ABS46479.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis IP
           31758]
          Length = 693

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/676 (38%), Positives = 393/676 (58%), Gaps = 26/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST  GVG   +  L+KI       ET   DLL + P  + DR    +I ++     VT
Sbjct: 10  PLSTLSGVGASQAGKLAKI-----GLET-IQDLLLHLPLRYEDRTRLYRIGDLLPGLSVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + S     +RR     ++DG+G +TL FF     M KN    G+ +   G+ K+
Sbjct: 64  VEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSVGKHVIAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
             N   ++HP Y  H  +++   L E+   VY    G+     +K+I +AL+ L   V+ 
Sbjct: 122 GNNGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQATLRKLIDQALAMLDTCVIA 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242
           E +  +L   +S  S+ EA + +H P    +  D E    PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPIEL--SRSLISLPEAIHTLHRPPADIQLADLEQGKHPAQRRLIMEELLAHNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   +    +P+  E ++ Q+ L  +PF+PT++Q+  + +I +DM+Q   M+R++QGDV
Sbjct: 239 VRAGAQSYRALPLMAEEQLKQRFLAALPFTPTQAQQRVVAEIERDMTQSFPMMRLIQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +     V  + G     
Sbjct: 299 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHATTFRQWLEPLGFSVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R    E +A GQ  ++IGTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARLAQQEAVASGQVSMVIGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  +VI+R+K  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L EG++AYW+C  IEE +    ++       L        + ++HGRM   +K+++M +
Sbjct: 479 CLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAIMLA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +++
Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMI 658

Query: 657 EIARKDAKHILTQDPD 672
              ++ A+H+  Q P+
Sbjct: 659 PEVQRVARHLHQQYPE 674


>gi|317494701|ref|ZP_07953113.1| ATP-dependent DNA helicase RecG [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917303|gb|EFV38650.1| ATP-dependent DNA helicase RecG [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 693

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 258/675 (38%), Positives = 386/675 (57%), Gaps = 26/675 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L++  GVG   +  L+KI   G  N     DLL + P  + DR     I ++      T+
Sbjct: 11  LTSLAGVGASQAGKLAKI---GLEN---IQDLLLHLPLRYEDRTRLYAIKDLLPGLFATV 64

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G + + +     +RR     ++DGTG +T+ FF     M KN    G+ +   G+IK+ 
Sbjct: 65  EGEVLR-TDISFGRRRMMTSQISDGTGMLTMRFFNFNAAM-KNSLSPGKHVLAYGEIKRG 122

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
                ++HP Y      + N  L EA   VY    G+     +K+  +ALS L  +P  E
Sbjct: 123 NLGAEIIHPEYKIQGETE-NVELQEALTPVYPTTEGIRQATLRKLTDQALSLLDTVPIAE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNP---RKAKDFE-WTSPARERLAYDELLAGQIALLLM 243
            +  +L  ++   S+ +A  ++H P    +  D E    PA+ RL  +ELLA  +++L +
Sbjct: 182 LLPDEL--RRGLMSLPDALRMLHRPPPHMQLADLEHGKHPAQRRLILEELLAHNLSMLAV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   +    + ++ + ++   +L ++PF PT +QE  + DI  DM++   M+R++QGDVG
Sbjct: 240 RAGAQSHKALSLSADDRLKNLMLASLPFKPTAAQERVVADIEADMAKPVPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A    +  G Q  +MAP  +LA+QH    +++ +   + V  + G      
Sbjct: 300 SGKTLVAALAALRTIAHGKQVALMAPTELLAEQHANNFRQWFEPLGLKVGWLAGKQKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R+  +E IA G+  +I+GTHA+FQD +Q+  L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RQTQMEAIASGEVDMIVGTHAIFQDQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQGF 419

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R  ++IER+K   
Sbjct: 420 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDSRRTDIIERVKNAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L EG++AYW+C  IEE +    ++       L        +A++HGRM   +K+ VM +F
Sbjct: 480 LKEGRQAYWVCTLIEESEMLEAQAAEATAEELKLLLPEIKVALVHGRMKAAEKQEVMRAF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 540 KAGETQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS+ +  RL VL+++ DGF+IA+ DL+ R  GE+LG KQ+G  +F +A      +L+ 
Sbjct: 600 TPLSQTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTKQTGSAEFKVADLLRDQALIP 659

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI    P+
Sbjct: 660 EVQRIARHIHQNYPE 674


>gi|22124025|ref|NP_667448.1| ATP-dependent DNA helicase RecG [Yersinia pestis KIM 10]
 gi|45439902|ref|NP_991441.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51594391|ref|YP_068582.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis IP
           32953]
 gi|108809497|ref|YP_653413.1| ATP-dependent DNA helicase RecG [Yersinia pestis Antiqua]
 gi|108813974|ref|YP_649741.1| ATP-dependent DNA helicase RecG [Yersinia pestis Nepal516]
 gi|145601109|ref|YP_001165185.1| ATP-dependent DNA helicase RecG [Yersinia pestis Pestoides F]
 gi|150260900|ref|ZP_01917628.1| ATP-dependent DNA helicase [Yersinia pestis CA88-4125]
 gi|162419548|ref|YP_001604682.1| ATP-dependent DNA helicase RecG [Yersinia pestis Angola]
 gi|165926091|ref|ZP_02221923.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165936250|ref|ZP_02224819.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166011481|ref|ZP_02232379.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213734|ref|ZP_02239769.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167402096|ref|ZP_02307573.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419330|ref|ZP_02311083.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167426678|ref|ZP_02318431.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167468212|ref|ZP_02332916.1| ATP-dependent DNA helicase RecG [Yersinia pestis FV-1]
 gi|170026387|ref|YP_001722892.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis YPIII]
 gi|186893378|ref|YP_001870490.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis PB1/+]
 gi|218927257|ref|YP_002345132.1| ATP-dependent DNA helicase RecG [Yersinia pestis CO92]
 gi|229836147|ref|ZP_04456315.1| ATP-dependent DNA helicase [Yersinia pestis Pestoides A]
 gi|229839885|ref|ZP_04460044.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229841967|ref|ZP_04462122.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229904504|ref|ZP_04519615.1| ATP-dependent DNA helicase [Yersinia pestis Nepal516]
 gi|270488504|ref|ZP_06205578.1| ATP-dependent DNA helicase RecG [Yersinia pestis KIM D27]
 gi|294502144|ref|YP_003566206.1| ATP-dependent DNA helicase [Yersinia pestis Z176003]
 gi|21956768|gb|AAM83699.1|AE013610_11 DNA helicase [Yersinia pestis KIM 10]
 gi|45434757|gb|AAS60318.1| ATP-dependent DNA helicase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51587673|emb|CAH19273.1| ATP-dependent DNA helicase [Yersinia pseudotuberculosis IP 32953]
 gi|108777622|gb|ABG20141.1| ATP-dependent DNA helicase RecG [Yersinia pestis Nepal516]
 gi|108781410|gb|ABG15468.1| ATP-dependent DNA helicase RecG [Yersinia pestis Antiqua]
 gi|115345868|emb|CAL18726.1| ATP-dependent DNA helicase [Yersinia pestis CO92]
 gi|145212805|gb|ABP42212.1| ATP-dependent DNA helicase RecG [Yersinia pestis Pestoides F]
 gi|149290308|gb|EDM40385.1| ATP-dependent DNA helicase [Yersinia pestis CA88-4125]
 gi|162352363|gb|ABX86311.1| ATP-dependent DNA helicase RecG [Yersinia pestis Angola]
 gi|165915864|gb|EDR34472.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921951|gb|EDR39128.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165989627|gb|EDR41928.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205136|gb|EDR49616.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963324|gb|EDR59345.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167048471|gb|EDR59879.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167054367|gb|EDR64184.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169752921|gb|ACA70439.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis YPIII]
 gi|186696404|gb|ACC87033.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis PB1/+]
 gi|229678622|gb|EEO74727.1| ATP-dependent DNA helicase [Yersinia pestis Nepal516]
 gi|229690277|gb|EEO82331.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696251|gb|EEO86298.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229706595|gb|EEO92601.1| ATP-dependent DNA helicase [Yersinia pestis Pestoides A]
 gi|262360223|gb|ACY56944.1| ATP-dependent DNA helicase [Yersinia pestis D106004]
 gi|262364169|gb|ACY60726.1| ATP-dependent DNA helicase [Yersinia pestis D182038]
 gi|270337008|gb|EFA47785.1| ATP-dependent DNA helicase RecG [Yersinia pestis KIM D27]
 gi|294352603|gb|ADE62944.1| ATP-dependent DNA helicase [Yersinia pestis Z176003]
 gi|320013390|gb|ADV96961.1| ATP-dependent DNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 693

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/676 (38%), Positives = 393/676 (58%), Gaps = 26/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST  GVG   +  L+KI       ET   DLL + P  + DR    +I ++     VT
Sbjct: 10  PLSTLSGVGASQAGKLAKI-----GLET-IQDLLLHLPLRYEDRTRLYRIGDLLPGLSVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + S     +RR     ++DG+G +TL FF     M KN    G+ +   G+ K+
Sbjct: 64  VEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSVGKHVIAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
             N   ++HP Y  H  +++   L E+   VY    G+     +K+I +AL+ L   V+ 
Sbjct: 122 GNNGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQATLRKLIDQALAMLDTCVIA 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242
           E +  +L   +S  S+ EA + +H P    +  D E    PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPIEL--SRSLISLPEAIHTLHRPPADIQLADLEQGKHPAQRRLIMEELLAHNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   +    +P+  E ++ Q+ L  +PF+PT++Q+  + +I +DM+Q   M+R++QGDV
Sbjct: 239 VRAGAQSYRALPLMAEEQLKQRFLAALPFTPTQAQQRVVAEIERDMTQSFPMMRLIQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +     V  + G     
Sbjct: 299 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHATTFRQWLEPLGFSVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R    E +A GQ  ++IGTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARLAQQEAVASGQVSMVIGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLTLWEKGEEQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  +VI+R+K  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L EG++AYW+C  IEE +    ++       L        + ++HGRM   +K+++M +
Sbjct: 479 CLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAIMLA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +++
Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMI 658

Query: 657 EIARKDAKHILTQDPD 672
              ++ A+H+  Q P+
Sbjct: 659 PEVQRVARHLHQQYPE 674


>gi|330957275|gb|EGH57535.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 691

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 253/680 (37%), Positives = 392/680 (57%), Gaps = 30/680 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +    K+   G  N     D+LF+ P  + DR     I  +   +   I
Sbjct: 9   VTALKGVGEAMA---EKLARVGLEN---LQDVLFHLPLRYQDRTRIVPIGALRPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
            + + + HP Y    + D   P+   +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240
           W+ ++L +      + +A   +H+P    D +       W   A+ RLA++ELL  Q++ 
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHW---AQHRLAFEELLTHQLSQ 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QG
Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G + 
Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K   
Sbjct: 357 GKARVASLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++
Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M 
Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAEKAAIMA 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LL
Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       L
Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655

Query: 656 LEIARKDAKHILTQDPDLTS 675
           L   R  A+ +L + P   S
Sbjct: 656 LPAVRDAAQALLERWPQHVS 675


>gi|226953855|ref|ZP_03824319.1| ATP-dependent DNA helicase [Acinetobacter sp. ATCC 27244]
 gi|226835338|gb|EEH67721.1| ATP-dependent DNA helicase [Acinetobacter sp. ATCC 27244]
          Length = 681

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 258/655 (39%), Positives = 389/655 (59%), Gaps = 47/655 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLF+ P  + DR     ++++   R   + G + +   F   K++    LL D  G++T
Sbjct: 28  DLLFHLPRDYEDRSTIIPMNQLMVGRSYLLEGEV-RSIDFPPGKKKSLAALLQDDFGKVT 86

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP--HYIFHNSQDVNFPL----I 156
           L F Y   + L +    G ++ + G+++     + + HP    I  ++     PL    +
Sbjct: 87  LRF-YHIYKGLTDRIQVGNRLRIFGEVRVGARGLELYHPEIQVILQHT-----PLPKTQL 140

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
            A+Y    GL+    ++ + +AL+        +LP        +  +   + +A + IH 
Sbjct: 141 TAIYPSTEGLTQPKLREYVRQALAHHSDDLAELLPS-------KYSNGYELKQALHYIHE 193

Query: 212 PRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI-AQKIL 266
           P    +     + + PA++RL ++EL+A QI+LL  R+ + ++I  P     K+ A+++L
Sbjct: 194 PPIDANMVQLNQGSHPAQQRLIFEELVAHQISLL-TRRAYIRQIAAPKFTSSKVLAKQLL 252

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             +PF  T +Q+   K+ILQD+ Q+  MLR++QGDVG+GKTLVA IA   A+EA  Q  +
Sbjct: 253 EALPFQMTNAQKRVSKEILQDLKQQQPMLRLVQGDVGAGKTLVAAIAACHALEAEWQVAL 312

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  ILA+QHY   K++ +   I V  ++G      R +A + I  G + +I+GTHALF
Sbjct: 313 MAPTEILAEQHYLNFKRWFEPLGIDVAWLSGKQKGKARTQAEQHIREGHSQLIVGTHALF 372

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDI 443
           QD++ + KL LVI+DEQHRFGV QRL L  K      PH L+MTATPIPRTL +++ GD+
Sbjct: 373 QDNVAFSKLGLVIIDEQHRFGVDQRLALRNKGADQFTPHQLVMTATPIPRTLAMSAYGDL 432

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------- 496
           D S I E P GR PI+TV IP++R +EV++R+     EGK+AYW+C  +E+ +       
Sbjct: 433 DTSVIDELPPGRTPIQTVTIPLDRREEVLQRIAQNCREGKQAYWVCTLVEQSETLDAQAA 492

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           E+ ++ + ERF  L      ++ ++HG+M   +K++VM +FK+   +LLIATTVIEVG+D
Sbjct: 493 EATYQEIKERFPDL------NVGLVHGKMKADEKQAVMQAFKDNQSQLLIATTVIEVGVD 546

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +ASI++IENAE  GL+QLHQLRGRVGRG   S C LLY  PLS+N   RLS+L+ + D
Sbjct: 547 VPNASIMVIENAERLGLSQLHQLRGRVGRGATASFCALLYKTPLSQNGQERLSILRESND 606

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           GF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A   A+ IL   P
Sbjct: 607 GFVIAEKDLEIRGPGELLGTKQTGDMGFRVARLERDDHLLTQAHYVAEQILKDYP 661


>gi|261211273|ref|ZP_05925562.1| ATP-dependent DNA helicase RecG [Vibrio sp. RC341]
 gi|260839774|gb|EEX66385.1| ATP-dependent DNA helicase RecG [Vibrio sp. RC341]
          Length = 692

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 264/675 (39%), Positives = 394/675 (58%), Gaps = 26/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIF---HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + ++HP Y F     + DV  P +  VY    GL     + +  +AL+ L    + 
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L 
Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLSQFEQGRHPAQVRLIMEELLAQNLSMLA 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+++ + M+R++QGDV
Sbjct: 238 IRSQGQQDVALPLPPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLAKPHPMMRLVQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +   
Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGK 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K     
Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEHVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++  
Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  E    L       +I ++HGRM   +K++VM +
Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEDLQRKLPEVNIGLVHGRMKAAEKQAVMQA 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+
Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657

Query: 657 EIARKDAKHILTQDP 671
              ++ A+HI  + P
Sbjct: 658 PQVQRIARHIHERYP 672


>gi|297581546|ref|ZP_06943469.1| ATP-dependent DNA helicase RecG [Vibrio cholerae RC385]
 gi|297534384|gb|EFH73222.1| ATP-dependent DNA helicase RecG [Vibrio cholerae RC385]
          Length = 692

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 263/675 (38%), Positives = 395/675 (58%), Gaps = 26/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + ++HP Y F     + DV  P +  VY    GL     + +  +AL+ L    + 
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLDKSAVQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L 
Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R Q ++++ +P+    ++ Q++L  +PF+PTK+Q+  + +I  D+ + + M+R++QGDV
Sbjct: 238 IRSQGQQDVALPLASVHQLKQQLLAQLPFTPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +   
Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGK 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K     
Sbjct: 358 ARDTELARIASGEVKMVVGTHALFQEQVSFGHLALVIIDEQHRFGVHQRLELREKGAKQG 417

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP ++ DE++ER++  
Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDSKRDEIVERIRHA 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  E    L       +I ++HGRM   +K++VM +
Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPDLNIGLVHGRMKPAEKQAVMQA 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+
Sbjct: 538 FKNNQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL+VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 598 HAPLSKTAQKRLAVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657

Query: 657 EIARKDAKHILTQDP 671
              ++ A+HI  + P
Sbjct: 658 PQVQRIARHIHERYP 672


>gi|313199832|ref|YP_004038490.1| ATP-dependent DNA helicase recg [Methylovorus sp. MP688]
 gi|312439148|gb|ADQ83254.1| ATP-dependent DNA helicase RecG [Methylovorus sp. MP688]
          Length = 670

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 265/669 (39%), Positives = 379/669 (56%), Gaps = 36/669 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL + P  ++D      I ++       + G I  H+  Q + R+     L D +G +T
Sbjct: 15  DLLLHLPLRYVDETRVTPIRDLRLGEQAQVEGEII-HAEVQYKPRKALIARLQDASGILT 73

Query: 103 LLF--FY-RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
           L F  FY  +   LK    EG ++   G+++       MVHP              +  V
Sbjct: 74  LRFLNFYPSQIAALK----EGNRLRALGEVRNGFFGYEMVHPQCKPVREGAAVKQTLTPV 129

Query: 160 YSLPTGLSVDLFKKIIVEAL---SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
           Y    GLS    +K I  AL   S   +LP      + Q K++P   ++   +H P    
Sbjct: 130 YPTTAGLSQPSLRKWIGRALETASHDELLP----AKVYQGKAWPDFQQSLLQLHYPPPDA 185

Query: 217 DF----EWTSPARERLAYDELLAGQIALLLMRKQF--KKEIGIP-INVEGKIAQKILRNI 269
           D     E T+PA +RLA+DELLA QI+   MRK +  ++ +G P +    K+   +L+++
Sbjct: 186 DQHALQEKTTPAWQRLAFDELLAQQIS---MRKHYARRRGLGAPAMPPSKKLVSALLKSL 242

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T +Q+    DI  D+ +   M R+LQGDVGSGKT+VA +A   A+E G QA IMAP
Sbjct: 243 PFGLTAAQQRVFSDIQHDLGRSYPMQRLLQGDVGSGKTIVAAMAALQAIEHGWQAAIMAP 302

Query: 330 IGILAQQHYEFIKKYTQN-----TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
             ILA+QH+  +  + QN       + V  + G+  +  R +AL  IA G+A ++IGTHA
Sbjct: 303 TEILAEQHFNKLNTWLQNLAAGAAPVRVVWVAGSQGKKARAEALAAIASGEAQLVIGTHA 362

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +FQD +Q+ +L LV+VDEQHRFGVQQRL L QK   PH L+M+ATPIPRTL ++   D+D
Sbjct: 363 VFQDQVQFARLGLVVVDEQHRFGVQQRLALRQKGAQPHQLMMSATPIPRTLSMSYFADLD 422

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           +S I E P GR P+ T ++   R +EV ER++   S+G++AYW+CP IEE +    ++ V
Sbjct: 423 VSVIDELPPGRTPVVTKLVSDARREEVFERVRAACSQGRQAYWVCPLIEESEALQLQTAV 482

Query: 505 ERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +   +L E F    + ++HGRM   DK++VM +F      LL+ATTVIEVG+DV +AS++
Sbjct: 483 DTHIALQEVFPELQVGLVHGRMKPADKQAVMQAFAANQIHLLVATTVIEVGVDVPNASLM 542

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +IE+AE  GL+QLHQLRGRVGRG   S+CILLY  PLS+ +  RL ++  + DGF IA+ 
Sbjct: 543 VIEHAERMGLSQLHQLRGRVGRGAASSACILLYQTPLSETARARLKIIYESSDGFEIAQA 602

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           DL  R  GE +GI+QSG P   IA  E    LLE A+  A  +L + P       Q    
Sbjct: 603 DLHLRGPGEFMGIRQSGTPMLKIADLERDAGLLEEAQAMADWLLQKHPQAAEAHLQR--- 659

Query: 684 LLYLYQYNE 692
             +L+Q  E
Sbjct: 660 --WLHQAQE 666


>gi|68171581|ref|ZP_00544954.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|67998991|gb|EAM85669.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Ehrlichia
           chaffeensis str. Sapulpa]
          Length = 528

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/530 (44%), Positives = 334/530 (63%), Gaps = 9/530 (1%)

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
           L  GL+     K++  ++  LP  PEWI++ LL+   + S  E+   IH+P      E  
Sbjct: 2   LIRGLTSKRISKLVKLSVRLLPDFPEWIDEKLLRDNRWNSWKESLIKIHHP---DTLEAV 58

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
              R RLAYDELL+ QI++ ++RK F  + G+ I  +      IL  +PF  T+ Q+  I
Sbjct: 59  HLHRARLAYDELLSHQISVKMVRK-FDYQQGVSIVSKQLYYNDILNKLPFKLTEGQKEVI 117

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
             I +  + +NRM+++L GDVGSGKT+VAL A+   +E GGQ   MAP  ILA+QHY +I
Sbjct: 118 SQITKSQASENRMVKLLIGDVGSGKTVVALFAILNVIENGGQVAFMAPTEILAEQHYRWI 177

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
           +    +  + VE++T  + +    K  +++  G+ +++IGTHALFQD + +  L L+I+D
Sbjct: 178 RAILSDISVDVELLTSKVRKKQNIK--KKLQLGECNVVIGTHALFQDGVDFNNLNLIIID 235

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           EQ RFGV QR++L  K+    VL MTATPIPRTL     GDID  ++ +KP  R PI+T 
Sbjct: 236 EQQRFGVLQRMRLINKSNMADVLFMTATPIPRTLEQVVYGDIDCLRLKDKPHNRLPIQTS 295

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           I+ I R+ EVI +L++ L EG KAYWICP IE+ +  +  +  +RF +L E F   + +I
Sbjct: 296 IVNIERLFEVIAKLQLALQEGNKAYWICPYIEDSELLDIAAAEKRFFTLQEVFGKDVGLI 355

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           H R+  I+K+ VM SF NG  KLL+ATTVIEVG+D+ DA+IIIIENAE FGL+QLHQLRG
Sbjct: 356 HSRLPKIEKDEVMMSFYNGNIKLLVATTVIEVGVDIPDATIIIIENAEQFGLSQLHQLRG 415

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           RVGR ++ S CILL+   LSK +Y +L +L+  +DGF IAE+DL  R  G++LGIKQSG+
Sbjct: 416 RVGRSDKSSFCILLHGNMLSKIAYKKLCILRKFQDGFYIAEQDLLLRGSGDVLGIKQSGL 475

Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
             F  A       L+ IA + A  IL  D + T + G     LL+++ Y+
Sbjct: 476 SNFKFADIYKDQGLISIAVEQAGAIL--DANKTEL-GDHFNQLLHMFGYD 522


>gi|310765944|gb|ADP10894.1| ATP-dependent DNA helicase RecG [Erwinia sp. Ejp617]
          Length = 693

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 255/679 (37%), Positives = 376/679 (55%), Gaps = 32/679 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   +  L+K+            DLL + P  + DR     I+ +      T
Sbjct: 10  PLNTLSGVGASQATKLAKL------GLVTVQDLLLHLPLRYEDRTQLYAINNLLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  HS     +RR     + DGTG +TL FF     M KN    GR++T  G+IK+
Sbjct: 64  VEGEVL-HSDISFGRRRMLTCQIGDGTGTLTLRFFNFNAGM-KNSLAAGRRVTAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLP------ 183
            +    ++HP Y       V      +  VYS   G+     + +  +AL+ L       
Sbjct: 122 GQRGAEIIHPEYKVQGEHSVTGLQETLTPVYSTTEGVRQATLRNLTDQALTLLDTCAIAE 181

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIA 239
           +LP  +   L+      S+ +A   +H P      A     T PA+ RL  +ELLA  ++
Sbjct: 182 LLPPQLSGGLI------SLPDALRTLHRPPPDIALADLDSGTHPAQRRLIMEELLAHNLS 235

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +L +R   ++   +P++   +++ ++L  +PF PT +Q+  +++I  D++    M+R++Q
Sbjct: 236 MLAVRAGAQRYHALPMSPRHELSDRLLAALPFRPTAAQQRVVREIENDLAHDYPMMRLVQ 295

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +     +  G Q  +MAP  +LA+QH    +++     + V  + G  
Sbjct: 296 GDVGSGKTLVAALTALNVIAWGKQVALMAPTELLAEQHANNFRQWFAPLGLEVGWLAGKQ 355

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R    E IA GQ  +I+GTHA+FQ  +Q+  L LVI+DEQHRFGV QRL L +K  
Sbjct: 356 KGKARLAQQEAIASGQVSMIVGTHAIFQQQVQFNGLALVIIDEQHRFGVHQRLALWEKGE 415

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I R+
Sbjct: 416 EQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRADIITRV 475

Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           K    SEG++AYW+C  IEE +    ++    +  L       +I ++HGRM   +K++V
Sbjct: 476 KDACGSEGRQAYWVCTLIEESELLEAQAAQATWEELQLALPELTIGLVHGRMKPAEKQAV 535

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +FK G   LLIATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 536 MQAFKQGEIHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 595

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      
Sbjct: 596 LLYKSPLSKTAQKRLQVLRDSNDGFVIAQCDLEIRGPGELLGTRQTGNAEFRVADLLRDQ 655

Query: 654 SLLEIARKDAKHILTQDPD 672
           +L+   ++ A+HI    P+
Sbjct: 656 ALIPEVQRVARHIHQHYPE 674


>gi|292486539|ref|YP_003529405.1| ATP-dependent DNA helicase RecG [Erwinia amylovora CFBP1430]
 gi|292897774|ref|YP_003537143.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
 gi|291197622|emb|CBJ44716.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
 gi|291551952|emb|CBA18989.1| ATP-dependent DNA helicase RecG [Erwinia amylovora CFBP1430]
          Length = 693

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/679 (37%), Positives = 377/679 (55%), Gaps = 32/679 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   +  L+K+            DLL + P  + DR     I+ +      T
Sbjct: 10  PLNTLSGVGASQATKLAKL------GLVTVQDLLLHLPLRYEDRTQLYAINNLQPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  H      +RR     + DGTG +TL FF     M KN    GR++T  G+IK+
Sbjct: 64  VAGEVL-HCDISFGRRRMLTCQITDGTGTVTLRFFNFNAGM-KNSLAVGRRVTAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLP------ 183
            +    ++HP Y       V      +  VYS   G+     + +  +AL+ L       
Sbjct: 122 GQRGAEIIHPEYKVQGEHSVTGLQETLTPVYSTTEGVRQATLRNLTDQALTLLDTCAIAE 181

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNP---RKAKDFE-WTSPARERLAYDELLAGQIA 239
           +LP  +   L+      S+ +A   +H P       D +  T PA+ RL  +ELLA  ++
Sbjct: 182 LLPPQLRGGLI------SLPDALRTLHRPPPDMALADLDSGTHPAQRRLIMEELLAHNLS 235

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +L +R   ++   +P++   +++ ++L  +PF PT +Q+  +++I  D++    M+R++Q
Sbjct: 236 MLAVRAGAQRYHALPMSPRHQLSDRLLAALPFRPTAAQQRVVREIENDLAHDYPMMRLVQ 295

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +     +  G Q  +MAP  +LA+QH    +++     + V  + G  
Sbjct: 296 GDVGSGKTLVAALTALNVIAWGKQVALMAPTELLAEQHANNFRQWFAPLGLEVGWLAGKQ 355

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R    E IA G+  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K  
Sbjct: 356 KGKARLAQQEAIASGRVSMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGE 415

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I R+
Sbjct: 416 DQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRADIITRV 475

Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           K    SEG++AYW+C  IEE +    ++    +  L       +I ++HGRM   +K++V
Sbjct: 476 KDACSSEGRQAYWVCTLIEESELLEAQAAQATWEELQLALPELTIGLVHGRMKPAEKQAV 535

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +FK G   LLIATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 536 MQAFKQGEIHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 595

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      
Sbjct: 596 LLYKSPLSKTAQKRLQVLRDSNDGFMIAQCDLEIRGPGELLGTRQTGNAEFRVADLLRDQ 655

Query: 654 SLLEIARKDAKHILTQDPD 672
           +L+   ++ A+HI    P+
Sbjct: 656 ALIPEVQRVARHIHQHYPE 674


>gi|153802204|ref|ZP_01956790.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MZO-3]
 gi|153825548|ref|ZP_01978215.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MZO-2]
 gi|124122278|gb|EAY41021.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MZO-3]
 gi|149740833|gb|EDM54924.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MZO-2]
          Length = 692

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 264/675 (39%), Positives = 392/675 (58%), Gaps = 26/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + ++HP Y F     + DV  P +  VY    GL     + +  +AL+ L    + 
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L 
Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+ + + M+R++QGDV
Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +   
Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGK 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K     
Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++  
Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +
Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+
Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657

Query: 657 EIARKDAKHILTQDP 671
              ++ A+HI  + P
Sbjct: 658 PQVQRIARHIHERYP 672


>gi|229513632|ref|ZP_04403096.1| ATP-dependent DNA helicase RecG [Vibrio cholerae TMA 21]
 gi|254285900|ref|ZP_04960862.1| ATP-dependent DNA helicase RecG [Vibrio cholerae AM-19226]
 gi|150424082|gb|EDN16021.1| ATP-dependent DNA helicase RecG [Vibrio cholerae AM-19226]
 gi|229349509|gb|EEO14465.1| ATP-dependent DNA helicase RecG [Vibrio cholerae TMA 21]
          Length = 692

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 264/675 (39%), Positives = 392/675 (58%), Gaps = 26/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + ++HP Y F     + DV  P +  VY    GL     + +  +AL+ L    + 
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L 
Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+ + + M+R++QGDV
Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +   
Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGK 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K     
Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++  
Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +
Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+
Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657

Query: 657 EIARKDAKHILTQDP 671
              ++ A+HI  + P
Sbjct: 658 PQVQRIARHIHERYP 672


>gi|262190096|ref|ZP_06048387.1| ATP-dependent DNA helicase RecG [Vibrio cholerae CT 5369-93]
 gi|262034026|gb|EEY52475.1| ATP-dependent DNA helicase RecG [Vibrio cholerae CT 5369-93]
          Length = 692

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 263/675 (38%), Positives = 392/675 (58%), Gaps = 26/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + ++HP Y F     + DV  P +  VY    GL     + +  +AL+ L    + 
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L 
Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSAEIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R Q ++++ +P+    ++ Q++L  +PF+PTK+Q+  + +I  D+ + + M+R++QGDV
Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFTPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +   
Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGK 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K     
Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++  
Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +
Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQTVMQA 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+
Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657

Query: 657 EIARKDAKHILTQDP 671
              ++ A+HI  + P
Sbjct: 658 PQVQRIARHIHERYP 672


>gi|301156627|emb|CBW16098.1| ATP-dependent DNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 693

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 258/678 (38%), Positives = 396/678 (58%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   S  LS++   G  N     DLLF+ P  + DR     I+++  E+  T
Sbjct: 10  PLTTLSGVGAAISDKLSRL---GIHN---LQDLLFHLPIRYEDRTRITPIADLRPEQYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G + Q       +R    + L+DGT +I L FF     M KN F  G ++   G+IK+
Sbjct: 64  IEGVV-QTCEVAFGRRPILTVSLSDGTSKIMLRFFNFNVGM-KNSFQIGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y  I  N+  V    +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRFMAEIHHPEYQIIRDNAPLVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKIQ 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLL 242
             ++L  +  P   S+ +A   +H P      +       PA++RL ++ELLA  +A+  
Sbjct: 179 LTEILPNEFNPHPFSLKDAIRFLHRPPPDISLDILEKGQHPAQQRLIFEELLAHNLAMQK 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++ + +P++ +  + Q+ L ++PF PT +Q   + DI QD+++   M+R++QGDV
Sbjct: 239 VRLGTQQFLALPLHYQTNLKQRFLASLPFQPTNAQNRVVADIEQDLAKDYPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFRRWLEPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARQTELEKIKSGAVQMVVGTHALFQEEVEFADLALVIIDEQHRFGVHQRLMLREKGEKAG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV+I   R DE++ R+K  
Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEERRDEIVARVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            ++E ++AYW+C  I+E +    ++    +  L +      I ++HGRM   +K+ +M +
Sbjct: 479 CINEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLKIGLVHGRMKPQEKQDIMAA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y
Sbjct: 539 FKSAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +F +A       ++
Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAEFKVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
              +  AK ++ + PD+ 
Sbjct: 659 PTVQHYAKALIVKYPDVA 676


>gi|258620423|ref|ZP_05715461.1| ATP-dependent DNA helicase RecG [Vibrio mimicus VM573]
 gi|262170362|ref|ZP_06038040.1| ATP-dependent DNA helicase RecG [Vibrio mimicus MB-451]
 gi|258587302|gb|EEW12013.1| ATP-dependent DNA helicase RecG [Vibrio mimicus VM573]
 gi|261891438|gb|EEY37424.1| ATP-dependent DNA helicase RecG [Vibrio mimicus MB-451]
          Length = 692

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 263/675 (38%), Positives = 393/675 (58%), Gaps = 26/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+      +     DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------SLHTVQDLLFHLPLRYEDRTRVYPIVQVHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + ++HP Y F     + DV  P +  VY    GL     + +  +AL+ L    + 
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L 
Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+ + + M+R++QGDV
Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +   
Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGK 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K     
Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++  
Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERIRHA 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +
Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+
Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLI 657

Query: 657 EIARKDAKHILTQDP 671
              ++ A+HI  + P
Sbjct: 658 PQVQRIARHIHERYP 672


>gi|153828335|ref|ZP_01981002.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 623-39]
 gi|148876165|gb|EDL74300.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 623-39]
          Length = 692

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 264/675 (39%), Positives = 392/675 (58%), Gaps = 26/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + ++HP Y F     + DV  P +  VY    GL     + +  +AL+ L    + 
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKTAVQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L 
Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSTDIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+ + + M+R++QGDV
Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +   
Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIRVGWLAGKLKGK 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K     
Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++  
Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +
Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+
Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657

Query: 657 EIARKDAKHILTQDP 671
              ++ A+HI  + P
Sbjct: 658 PQVQRIARHIHERYP 672


>gi|238789530|ref|ZP_04633314.1| ATP-dependent DNA helicase recG [Yersinia frederiksenii ATCC 33641]
 gi|238722283|gb|EEQ13939.1| ATP-dependent DNA helicase recG [Yersinia frederiksenii ATCC 33641]
          Length = 693

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 261/676 (38%), Positives = 391/676 (57%), Gaps = 26/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST  GVG   +  L+K+       ET   DLL + P  + DR    +I ++     VT
Sbjct: 10  PLSTLSGVGASQAGKLAKM-----GLET-IQDLLLHLPLRYEDRTRLYRIGDLLPGLSVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + S     +RR     + DGTG +TL FF     M KN    G+ +   G+ K+
Sbjct: 64  VEGEVIR-SDISFGRRRMMTSQITDGTGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
                 ++HP Y  H  +++   L E+   VY    G+     +K+I +AL+ L   V+ 
Sbjct: 122 GNTGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQATLRKLIDQALAMLDTCVIA 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242
           E +  +L   +S  S+ EA + +H P    +  D E    PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPIEL--SRSLISLPEAIHTLHRPPADIQLFDLEQGKHPAQRRLIMEELLAHNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   +    +P+  E ++ Q+ L  +PF+PT++Q+  + +I QDM+    M+R++QGDV
Sbjct: 239 VRAGAQSYRALPLLAEEQLKQRFLAALPFTPTRAQQRVVAEIEQDMTHNFPMMRLIQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V  + G     
Sbjct: 299 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLEPLGLEVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R    E +A GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARLAQQEAVASGQVSMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  +VI+R+K  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L EG++AYW+C  IEE +    ++       L        + ++HGRM   +K++VM +
Sbjct: 479 CLEEGRQAYWVCTLIEESELLEAQAAEVTCEELRVALPEIKVGLVHGRMKGPEKQAVMQA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +++
Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMI 658

Query: 657 EIARKDAKHILTQDPD 672
              ++ A+H+  Q P+
Sbjct: 659 PEVQRVARHLHQQYPE 674


>gi|15642705|ref|NP_232338.1| ATP-dependent DNA helicase RecG [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121586640|ref|ZP_01676425.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 2740-80]
 gi|121726729|ref|ZP_01679954.1| ATP-dependent DNA helicase RecG [Vibrio cholerae V52]
 gi|147674684|ref|YP_001218199.1| ATP-dependent DNA helicase RecG [Vibrio cholerae O395]
 gi|153817408|ref|ZP_01970075.1| ATP-dependent DNA helicase RecG [Vibrio cholerae NCTC 8457]
 gi|153821266|ref|ZP_01973933.1| ATP-dependent DNA helicase RecG [Vibrio cholerae B33]
 gi|227082825|ref|YP_002811376.1| ATP-dependent DNA helicase RecG [Vibrio cholerae M66-2]
 gi|229507241|ref|ZP_04396746.1| ATP-dependent DNA helicase RecG [Vibrio cholerae BX 330286]
 gi|229509838|ref|ZP_04399319.1| ATP-dependent DNA helicase RecG [Vibrio cholerae B33]
 gi|229516960|ref|ZP_04406406.1| ATP-dependent DNA helicase RecG [Vibrio cholerae RC9]
 gi|229606747|ref|YP_002877395.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MJ-1236]
 gi|254851248|ref|ZP_05240598.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MO10]
 gi|255744331|ref|ZP_05418283.1| ATP-dependent DNA helicase RecG [Vibrio cholera CIRS 101]
 gi|262158559|ref|ZP_06029674.1| ATP-dependent DNA helicase RecG [Vibrio cholerae INDRE 91/1]
 gi|262170047|ref|ZP_06037736.1| ATP-dependent DNA helicase RecG [Vibrio cholerae RC27]
 gi|298500474|ref|ZP_07010278.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MAK 757]
 gi|9657308|gb|AAF95851.1| ATP-dependent DNA helicase RecG [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549199|gb|EAX59232.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 2740-80]
 gi|121630890|gb|EAX63272.1| ATP-dependent DNA helicase RecG [Vibrio cholerae V52]
 gi|126511994|gb|EAZ74588.1| ATP-dependent DNA helicase RecG [Vibrio cholerae NCTC 8457]
 gi|126521198|gb|EAZ78421.1| ATP-dependent DNA helicase RecG [Vibrio cholerae B33]
 gi|146316567|gb|ABQ21106.1| ATP-dependent DNA helicase RecG [Vibrio cholerae O395]
 gi|227010713|gb|ACP06925.1| ATP-dependent DNA helicase RecG [Vibrio cholerae M66-2]
 gi|227014597|gb|ACP10807.1| ATP-dependent DNA helicase RecG [Vibrio cholerae O395]
 gi|229346023|gb|EEO10995.1| ATP-dependent DNA helicase RecG [Vibrio cholerae RC9]
 gi|229353312|gb|EEO18251.1| ATP-dependent DNA helicase RecG [Vibrio cholerae B33]
 gi|229354746|gb|EEO19667.1| ATP-dependent DNA helicase RecG [Vibrio cholerae BX 330286]
 gi|229369402|gb|ACQ59825.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MJ-1236]
 gi|254846953|gb|EET25367.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MO10]
 gi|255737856|gb|EET93249.1| ATP-dependent DNA helicase RecG [Vibrio cholera CIRS 101]
 gi|262021455|gb|EEY40167.1| ATP-dependent DNA helicase RecG [Vibrio cholerae RC27]
 gi|262029720|gb|EEY48369.1| ATP-dependent DNA helicase RecG [Vibrio cholerae INDRE 91/1]
 gi|297540643|gb|EFH76700.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MAK 757]
          Length = 692

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 264/675 (39%), Positives = 392/675 (58%), Gaps = 26/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHN---SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + ++HP Y F     + DV  P +  VY    GL     + +  +AL  L    + 
Sbjct: 121 GNQGLEIIHPDYKFFTPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALVLLEKSAVQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L 
Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQIRLIMEELLAQNLSMLA 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+++ + M+R++QGDV
Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLAKPHPMMRLVQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +   
Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGK 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K     
Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++  
Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +
Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+
Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657

Query: 657 EIARKDAKHILTQDP 671
              ++ A+HI  + P
Sbjct: 658 PQVQRIARHIHERYP 672


>gi|157828759|ref|YP_001495001.1| ATP-dependent DNA helicase RecG [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933486|ref|YP_001650275.1| ATP-dependent DNA helicase [Rickettsia rickettsii str. Iowa]
 gi|157801240|gb|ABV76493.1| ATP-dependent DNA helicase RecG [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908573|gb|ABY72869.1| ATP-dependent DNA helicase [Rickettsia rickettsii str. Iowa]
          Length = 713

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 259/641 (40%), Positives = 373/641 (58%), Gaps = 47/641 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLFY P S+ ++   P ++E+ +  I+  T  + +  +   +  +P KI  ++ TG + 
Sbjct: 37  DLLFYLPVSYQNKILSPNLTEVRDGDIIQ-TEIVVESINLPKKSSQPLKITASNDTGSLL 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159
           L+FF++    + N    G    ++GK++   + + + HP +I      VN  L   IE +
Sbjct: 96  LVFFHKPPPFIFNKLQVGTSHIISGKVQFFDHYLQIAHPEFI------VNPKLAKEIEPI 149

Query: 160 YSLPTGLS-----------VDLFKK---------------IIVEALSRLPVLPEWIEKDL 193
           YSL   LS           +++F++               II++ L  L V     E  +
Sbjct: 150 YSLTYLLSNKKLYSYIIKAIEIFEEKCKSIEDKEVKDYLDIILQNLQMLHVFHHCEEACM 209

Query: 194 LQKKSFPSIAEAFNI-IHNPRKA-KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
             K+S  S  ++ N  +  P K  ++ +  + A+++LA  EL+A QI+LL +R Q  +  
Sbjct: 210 PTKQS--SNVKSINARLPQPLKGLRNDDLYTNAKKQLAAKELIANQISLLNVRTQISRRQ 267

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G        I   IL  + F  T  Q+  I++I  D S K  M+R+LQGDVGSGKTLVAL
Sbjct: 268 GNIYPKAVSIQANILNELGFELTSYQKQVIEEIECDQSDKIEMMRLLQGDVGSGKTLVAL 327

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           + M   V  G QA +MAP  +LA QHYEF  K  +NT I V ++TG +  A R+  + ++
Sbjct: 328 LTMVNVVATGFQATLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGAARKNIMIQL 387

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +G+  I++GTHALFQ+ + + KL  +++DEQHRFGVQQRL L  K   P VL+MTATPI
Sbjct: 388 DNGEIDILVGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPI 447

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PR+L LT  GD+ ISK+  KP  R PI T  + +N+I+ +I  +   L  G++ YWICP 
Sbjct: 448 PRSLALTMFGDMTISKLMGKPKSRLPIATNTMSVNKIEHIIVAINKKLIAGERVYWICPL 507

Query: 492 IEE------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           IE+      +++S    V+ RFNS+   +     IIHG+M +  K+ +M  FK G  K+L
Sbjct: 508 IEQGGKETPEEDSLLMDVMNRFNSIDNIYPGYTGIIHGKMKNEQKDQIMKQFKEGEIKIL 567

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNS 604
           +ATTVIEVGID+ +A++IIIENAE FGLAQLHQLRGRVGRG   S CILLY+P  L K +
Sbjct: 568 VATTVIEVGIDIPEATLIIIENAEQFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLRKVA 627

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
             R  ++K T DGF IAE+DLK R  GEILG+KQSG   F 
Sbjct: 628 RGRFEIMKQTNDGFYIAEQDLKLRGSGEILGVKQSGEIAFF 668


>gi|298484810|ref|ZP_07002910.1| ATP-dependent DNA helicase RecG [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160664|gb|EFI01685.1| ATP-dependent DNA helicase RecG [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 691

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/680 (37%), Positives = 392/680 (57%), Gaps = 30/680 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+++       ET   D+LF+ P  + DR     I  +   +   I
Sbjct: 9   VTALKGVGEAMAEKLARV-----GLET-LQDVLFHLPLRYQDRTRVVPIGALRPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
            + + + HP Y    + D   P+   +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240
           W+  +L +      + +A   +H+P    D E       W   A+ RLA++ELL  Q++ 
Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QG
Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G + 
Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K   
Sbjct: 357 GKARATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++
Sbjct: 416 GLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  I E +E   ++    +  L        + +IHGRM   +K ++M 
Sbjct: 476 AACAEGRQAYWVCTLIVESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAEKAAIMA 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LL
Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       L
Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655

Query: 656 LEIARKDAKHILTQDPDLTS 675
           L   R  A+ +L + P   S
Sbjct: 656 LPAVRDAAQAMLERWPQHVS 675


>gi|54307408|ref|YP_128428.1| ATP-dependent DNA helicase RecG [Photobacterium profundum SS9]
 gi|46911828|emb|CAG18626.1| putative ATP-dependent DNA helicase RecG [Photobacterium profundum
           SS9]
          Length = 697

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 256/678 (37%), Positives = 395/678 (58%), Gaps = 28/678 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+   GVG K +  L K+        T   DLLF+ P  + DR     I++    + + +
Sbjct: 11  LTELSGVGAKMAEKLEKV------GLTSVQDLLFHLPLRYEDRTRIWPIAQAMPGQHIAV 64

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +  +SS    KRR   + + D +G  TL FF     M +N   EG+++   G+IK+ 
Sbjct: 65  QGEVL-NSSITFGKRRMLTVRIADDSGSATLRFFNFNAAM-QNSLAEGKQVKAFGEIKRG 122

Query: 133 KNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188
           K  + ++HP Y +F  S  +     +  VY    GL     + +  +ALS L    + E 
Sbjct: 123 KFGLEIIHPDYSVFAESVSLTGEETLTPVYPTTEGLRQLTLRNLTDQALSLLDKAAVTEL 182

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMR 244
           + + L  ++   ++A+A +++H P      +       PA+ RL  +ELLA  +++L +R
Sbjct: 183 LPEGLYDRQM--TMAQALHVMHRPTPDVSLDQLEAGKHPAQHRLILEELLAQNLSMLAVR 240

Query: 245 KQFKKEIGIPI----NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            + ++    P+    N    + +K+L ++PFSPT +Q+  + DI  D+ +   M+R++QG
Sbjct: 241 SKSQQHSAWPLAACDNPADSLKEKLLASLPFSPTNAQQRVVADIEADLIKPLPMMRLVQG 300

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA +A   A++ G Q  +MAP  +LA+QH +   ++     I V  + G + 
Sbjct: 301 DVGSGKTLVAALAALQAIQHGFQVALMAPTELLAEQHAQNFAQWLNPMDIQVGWMAGKLK 360

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R   L RI +G+A +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K   
Sbjct: 361 GKARETELARIENGEAKMVVGTHALFQNHVSFKNLALVIIDEQHRFGVHQRLELREKGAN 420

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D++ S I E P GR P++TV +P +R   ++ER++
Sbjct: 421 EGHYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPVQTVALPDSRRAAIVERIR 480

Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
              L+EG++AYW+C  I+E +    ++  +  N L       ++ +IHGRM   +K+ +M
Sbjct: 481 TACLNEGRQAYWVCTLIDESEVLEAQAASDTANDLTAQLPELNVGLIHGRMKAAEKQEIM 540

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK G  +LL+ATTVIEVG+DV +AS+++IEN E  GLAQLHQLRGRVGRG+  S C+L
Sbjct: 541 RRFKAGELQLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGKVASHCVL 600

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LYH PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       
Sbjct: 601 LYHAPLSKTAQKRLGVLRDSSDGFVIAQRDLEIRGPGELLGTKQTGIADFKIADLVRDQH 660

Query: 655 LLEIARKDAKHILTQDPD 672
           L+   +K A++I  Q P+
Sbjct: 661 LIPQVQKLARYIHEQHPN 678


>gi|88861118|ref|ZP_01135752.1| ATP-dependent DNA helicase recG [Pseudoalteromonas tunicata D2]
 gi|88816840|gb|EAR26661.1| ATP-dependent DNA helicase recG [Pseudoalteromonas tunicata D2]
          Length = 694

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 265/694 (38%), Positives = 386/694 (55%), Gaps = 42/694 (6%)

Query: 4   SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
           S  N     +   +GVG K ++ L+K+      N     DLLF+ P  + DR     I E
Sbjct: 3   SLPNLALYSVDQLKGVGPKLAVRLAKL------NIRTVQDLLFHLPLRYEDRTRVYPICE 56

Query: 64  ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           +     VT+ G I +H      KR+     +NDGT  +TL FF   T   KN    G+ I
Sbjct: 57  LQAHSHVTVIGEI-EHCQVTFGKRKMMICQINDGTARLTLRFF-SFTAAQKNNLVAGKVI 114

Query: 124 TVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGL-----------SVDL 170
              G++++ +    M HP Y  +      +    +  VY    GL           +V+L
Sbjct: 115 RCFGEVRRGQVGYEMAHPEYSLVEQYQTIITDETLTPVYPTTEGLKQLSLRNLCDQAVEL 174

Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARE 226
            KK  +E L     LP  ++   L      S+ +A   +H P      E  +    PA++
Sbjct: 175 LKKYDIEEL-----LPAQLQPAQL------SLKQALLFLHQPTPDVCTEQLALGLHPAQQ 223

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286
           RLA +ELLA  ++LL +R++ +  + + +     + Q+ L  +PF PT +Q+  + +I Q
Sbjct: 224 RLALEELLAQNLSLLKLRQKAQAHLAVQLQSNHALEQQFLAQLPFKPTHAQQRVVTEIKQ 283

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           D++  + M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  ILA+QHY   K +  
Sbjct: 284 DLTLAHPMMRLVQGDVGSGKTLVAALAALTAIGQGYQVALMAPTEILAEQHYLSFKNWFS 343

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              I V  + G      R   L  +A+GQA +IIGTHALFQ  +Q++ L L+I+DEQHRF
Sbjct: 344 TLDIEVAWLAGKTKGKEREATLANLANGQAQMIIGTHALFQTQVQFFNLALIIIDEQHRF 403

Query: 407 GVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           GV QRL+L +K       PH L+MTATPIPRTL +T+  D++ S I E P GR PI TV 
Sbjct: 404 GVHQRLELREKGKFGDCYPHQLVMTATPIPRTLAMTAYADLETSIIDELPPGRTPITTVA 463

Query: 463 IPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520
           +P  R +E+IER++     + ++ YW+C  I+E +    ++  +    L        I +
Sbjct: 464 LPDTRREEIIERVRNACTQQQRQVYWVCTLIDESEVLQCQAAEDNAKELTVLLPELKIGL 523

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGRM   +K+++M+ FK G   +L+ATTVIEVG+DV +AS+IIIEN E  GLAQLHQLR
Sbjct: 524 VHGRMKPAEKQAIMEQFKQGEINVLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLR 583

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG   S C+LLYH PLS  +  RL+VL+ + DGF+IA++DL+ R  GE+LG KQ+G
Sbjct: 584 GRVGRGAIASHCLLLYHAPLSHTAKKRLAVLRESNDGFVIAQKDLEIRGPGEVLGSKQTG 643

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           + +F IA      +L+   R  A  +L   PDL+
Sbjct: 644 LAEFKIADLVRDQALVRDVRPMAIFLLNNHPDLS 677


>gi|312170607|emb|CBX78870.1| ATP-dependent DNA helicase RecG [Erwinia amylovora ATCC BAA-2158]
          Length = 693

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/679 (37%), Positives = 377/679 (55%), Gaps = 32/679 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   +  L+K+            DLL + P  + DR     I+ +      T
Sbjct: 10  PLNTLSGVGASQATKLAKL------GLVTVQDLLLHLPLRYEDRTQLYAINNLLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  H      +RR     + DGTG +TL FF     M KN    GR++T  G+IK+
Sbjct: 64  VAGEVL-HCDISFGRRRMLTCQITDGTGTVTLRFFNFNAGM-KNSLAVGRRVTAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRL------P 183
            +    ++HP Y       V      +  VYS   G+     + +  +AL+ L       
Sbjct: 122 GQRGAEIIHPEYKVQGEHSVTGLQETLTPVYSTTEGVRQATLRNLTDQALTLLDTCAIAE 181

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNP---RKAKDFE-WTSPARERLAYDELLAGQIA 239
           +LP  +   L+      S+ +A   +H P       D +  T PA+ RL  +ELLA  ++
Sbjct: 182 LLPPQLSGGLI------SLPDALRTLHRPPPDMALADLDSGTHPAQRRLIMEELLAHNLS 235

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +L +R   ++   +P++   +++ ++L  +PF PT +Q+  +++I  D++    M+R++Q
Sbjct: 236 MLAVRAGAQRYHALPMSPRHQLSDRLLAALPFRPTAAQQRVVREIENDLAHDYPMMRLVQ 295

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +     +  G Q  +MAP  +LA+QH    +++     + V  + G  
Sbjct: 296 GDVGSGKTLVAALTALNVIAWGKQVALMAPTELLAEQHANNFRQWFAPLGLEVGWLAGKQ 355

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R    E IA G+  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K  
Sbjct: 356 KGKARLAQQEAIASGRVSMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGE 415

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I R+
Sbjct: 416 EQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRADIITRV 475

Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           K    SEG++AYW+C  IEE +    ++    +  L       +I ++HGRM   +K++V
Sbjct: 476 KDACSSEGRQAYWVCTLIEESELLEAQAAQATWEELQLALPELTIGLVHGRMKPAEKQAV 535

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +FK G   LLIATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 536 MQAFKQGEIHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 595

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      
Sbjct: 596 LLYKSPLSKTAQKRLQVLRDSNDGFMIAQCDLEIRGPGELLGTRQTGNAEFRVADLLRDQ 655

Query: 654 SLLEIARKDAKHILTQDPD 672
           +L+   ++ A+HI    P+
Sbjct: 656 ALIPEVQRVARHIHQHYPE 674


>gi|153212584|ref|ZP_01948331.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 1587]
 gi|124116455|gb|EAY35275.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 1587]
          Length = 692

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 264/675 (39%), Positives = 391/675 (57%), Gaps = 26/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + ++HP Y F     + DV  P +  VY    GL     + +  +AL  L    + 
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALVLLEKSAVQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L 
Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+ + + M+R++QGDV
Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +   
Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGK 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K     
Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++  
Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +
Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+
Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657

Query: 657 EIARKDAKHILTQDP 671
              ++ A+HI  + P
Sbjct: 658 PQVQRIARHIHERYP 672


>gi|261492178|ref|ZP_05988748.1| helicase RecG [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261312158|gb|EEY13291.1| helicase RecG [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 693

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 265/682 (38%), Positives = 388/682 (56%), Gaps = 34/682 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   S   S+I    N       DLLF+ P  + DR     I+++  E   T
Sbjct: 10  PLTALSGVGAAISEKSSRI-GINNVQ-----DLLFHLPMRYEDRTRITPIADVRPESFAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I GY+ Q +  Q  KR    + L+D T +I L FF     M KN    G ++   G+IK+
Sbjct: 64  IEGYV-QLTEVQFGKRPILSVTLSDSTSKIMLKFFNFNAGM-KNSLATGVRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFPLIEA-----VYSLPTGLSVDLFKKIIVEALSRLPVL 185
            +    + HP Y I  ++Q    PL+ A     +YS   GL     +K+  +AL+   +L
Sbjct: 122 GRFMAEIHHPEYQIIRDNQ----PLVLAETLTPIYSTTEGLKQASLRKLTEQALA---LL 174

Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQI 238
            +    +LL  +  P   S+ EA  ++H P      E       PA++RL ++ELLA  +
Sbjct: 175 EKVKVAELLPDEYNPHKYSLKEALQLLHRPPPTISAEVLEKGDHPAQKRLIFEELLAHNL 234

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           A+  +R   K++    +  +  I Q+ L ++PF PT +Q     DI QD+++ + M+R++
Sbjct: 235 AMQQLRLGVKQQYAEALTYQTDIKQRFLDSLPFKPTHAQSRVTADIEQDLAKPHPMMRLV 294

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH      +     I V  + G 
Sbjct: 295 QGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLNPFGIEVGWLAGK 354

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    R   LE I +G   +IIGTHALFQD+++++ L LVI+DEQHRFGV QRL L +K 
Sbjct: 355 VKGKARTAQLEAIKNGDVQMIIGTHALFQDNVEFHHLALVIIDEQHRFGVHQRLTLREKG 414

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                 PH L+MTATPIPRTL +T   D+D S I E P GR PI TV+I  +R  E+++R
Sbjct: 415 AKENNYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEDRRAEIVQR 474

Query: 475 L-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           + +    E ++AYW+C  I+E +    ++       L        I ++HGR+   +K++
Sbjct: 475 VYQACKQEHRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRLKPQEKQA 534

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M  FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C
Sbjct: 535 IMAEFKAANLDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHC 594

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +L+Y PPL K S  RL V+++++DGF IAE+DL+ R  GEILG KQ+GM +F +A     
Sbjct: 595 VLMYKPPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVADLMRD 654

Query: 653 DSLLEIARKDAKHILTQDPDLT 674
             ++ + ++ AK I++++  L 
Sbjct: 655 RKMIPLVQRYAKQIISENQPLA 676


>gi|270159344|ref|ZP_06188000.1| ATP-dependent DNA helicase RecG [Legionella longbeachae D-4968]
 gi|289165836|ref|YP_003455974.1| ATP-dependent DNA helicase RecG [Legionella longbeachae NSW150]
 gi|269987683|gb|EEZ93938.1| ATP-dependent DNA helicase RecG [Legionella longbeachae D-4968]
 gi|288859009|emb|CBJ12937.1| ATP-dependent DNA helicase RecG [Legionella longbeachae NSW150]
          Length = 690

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 254/648 (39%), Positives = 375/648 (57%), Gaps = 24/648 (3%)

Query: 15  TFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74
           +  G+G   +   +K+  CG  +  R  DLLF+ P  + DR     + ++       I G
Sbjct: 8   SLTGIGPTLA---AKLAKCG-IHSVR--DLLFHLPYRYQDRTRITPLQDLQPNTWCVIAG 61

Query: 75  YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
            + + +  +  KR      + D TG I L FF+     +KN+      I   G++++  N
Sbjct: 62  EVCK-TEIKPGKRAMLHCYVQDKTGVIKLQFFHFNKNQIKNLN-NSVMIHAFGEVREFNN 119

Query: 135 RIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALS----RLPVLPEW 188
              M HP Y +F +    +    +  +Y    GLS    +++++ AL      L  L EW
Sbjct: 120 TWTMTHPEYQLFEDENQCHVHETLTPIYPSTQGLSQTRLRQLVLVALKSSEHELQQL-EW 178

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMR 244
           +    L+  +F  + EA  ++HNP      +       PA +RLA+DELLA ++++   R
Sbjct: 179 MSDAELKANNFYHLGEAIRLLHNPPPDISLQALESGQHPALKRLAFDELLAQRLSMQFAR 238

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +        P+  +  +  + L  +PF+ T++Q+   ++I  D+ QK  MLR++QGDVG+
Sbjct: 239 ESRSTLHATPLPRDHHLNNRFLSALPFTLTQAQQRVAEEINLDLMQKKPMLRLVQGDVGA 298

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++A +A   A+  G Q   MAP  +L++QH     ++ +   I +  +TG M  + R
Sbjct: 299 GKTIIAALAALQAIANGKQVAFMAPTDLLSEQHASNFMRWLEPLGIKILRLTGKMKASER 358

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----A 420
           R AL  +A     +IIGTHALFQ+++ +  L LVI+DEQHRFGV+QRL L QK       
Sbjct: 359 RHALSALADNSCQLIIGTHALFQEAVHFSHLGLVIIDEQHRFGVEQRLLLQQKGQHEQRV 418

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH LLMTATPIPRTL ++ L  +DIS I E P GR PI T ++  N+ + VIERL V LS
Sbjct: 419 PHQLLMTATPIPRTLSMSYLAHLDISIIDELPPGRIPITTAVLNQNKRETVIERLLVALS 478

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKN 539
            G++ YW+C  IEE ++    +  E  ++L E   ++ I +IHGRM  ++KE+ M +FKN
Sbjct: 479 TGRQIYWVCTLIEESEKLQCMAATETAHTLQEQLPAARIGLIHGRMKPLEKEATMAAFKN 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+LLY  P
Sbjct: 539 GEINLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGNTQSHCLLLYQSP 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           LS+ S  RL +++ T DGF+IAE+DL+ R  GEILG KQ+G  +F IA
Sbjct: 599 LSQQSTERLKIMRATNDGFIIAEKDLELRGAGEILGTKQTGYRQFKIA 646


>gi|258626032|ref|ZP_05720888.1| ATP-dependent DNA helicase RecG [Vibrio mimicus VM603]
 gi|258581683|gb|EEW06576.1| ATP-dependent DNA helicase RecG [Vibrio mimicus VM603]
          Length = 692

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 263/675 (38%), Positives = 391/675 (57%), Gaps = 26/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQVHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + ++HP Y F       DV  P +  VY    GL     + +  +AL+ L    + 
Sbjct: 121 GNQGLEIIHPDYKFFAPAQKPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L 
Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+ + + M+R++QGDV
Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +   
Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGK 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K     
Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++  
Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERIRNA 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +
Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+
Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLI 657

Query: 657 EIARKDAKHILTQDP 671
              ++ A+HI  + P
Sbjct: 658 PQVQRIARHIHERYP 672


>gi|149189235|ref|ZP_01867522.1| ATP-dependent DNA helicase RecG [Vibrio shilonii AK1]
 gi|148836989|gb|EDL53939.1| ATP-dependent DNA helicase RecG [Vibrio shilonii AK1]
          Length = 692

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 263/671 (39%), Positives = 388/671 (57%), Gaps = 28/671 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           GVG K +  L+K+            DLLF+ P  + DR     I  +      ++ G + 
Sbjct: 15  GVGAKVAEKLAKV------GLHSVQDLLFHLPHRYEDRTRIYPIVRLHPGLWGSVQGKVM 68

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
             S     +R+   + ++DG G ITL FF   T  +KN F EGR I   G++K+  + + 
Sbjct: 69  S-SDVAFGRRKMLTVKVSDGNGTITLRFF-NFTAAMKNNFSEGRLIVAYGEVKRGNHGLE 126

Query: 138 MVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRL--PVLPEWIEK 191
           ++HP Y F        P +E     VY    GL     + +  +AL  +    + E +  
Sbjct: 127 IIHPEYKFQTEGKA--PKLEQTLTPVYPTTEGLRQLTLRNLTDQALELMDKAAVDELLPS 184

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKA---KDF-EWTSPARERLAYDELLAGQIALLLMRKQF 247
            L  ++   ++AEA + IH P       DF E   PA++RL  +EL+A  +++L +R + 
Sbjct: 185 GLYNQQI--TLAEALHTIHRPPPTINLDDFDEGKHPAQQRLIIEELMAQNLSMLAVRSKG 242

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +++  I +    K+  ++L  +PFSPT +Q   +++I  D+++   M+R++QGDVGSGKT
Sbjct: 243 QQDTAIGLAPVEKLKDQLLEQLPFSPTGAQSRVVQEIETDLAKPIPMMRLVQGDVGSGKT 302

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           LVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  ++G      +   
Sbjct: 303 LVAALAAVRAIEHGYQVAMMAPTELLAEQHAINFAGWFEAMGIQVGWLSGKQKGKTKEAE 362

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHV 423
           L RIA G+A +++GTHALFQ+S+ ++ L LVI+DEQHRFGV QRL+L +K       PH 
Sbjct: 363 LARIASGEAQMVVGTHALFQESVDFHNLALVIIDEQHRFGVHQRLELREKGAKQGFYPHQ 422

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEG 482
           L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D++IER+K   L EG
Sbjct: 423 LIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIIERVKNACLHEG 482

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           K+AYW+C  I+E +    ++  E    L        I ++HGRM   +K+ VM  FKN  
Sbjct: 483 KQAYWVCTLIDESEVLEAQAAAETAEDLQRKLPDLKIGLVHGRMKPAEKQQVMKQFKNNE 542

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH PLS
Sbjct: 543 LHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHSPLS 602

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           K +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L+   ++
Sbjct: 603 KTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLVPEVQR 662

Query: 662 DAKHILTQDPD 672
            A+H+  Q P+
Sbjct: 663 IARHVHEQYPE 673


>gi|330977359|gb|EGH77309.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 691

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/680 (37%), Positives = 392/680 (57%), Gaps = 30/680 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+K+       ET   D+LF+ P  + DR     I  +   +   I
Sbjct: 9   VTALKGVGEAMAEKLAKV-----GLET-LQDVLFHLPLRYQDRTRIVPIGALRPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVS-GADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
            + + + HP Y    + D   P+   +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 121 ASGLAIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240
           W+ ++L +      + +A   +H+P    D E       W   A+ RLA++ELL  Q++ 
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QG
Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            VGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G + 
Sbjct: 297 GVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K   
Sbjct: 357 GKARVASLEQIAGGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVG 415

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MT TPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++
Sbjct: 416 GLMCPHQLIMTPTPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M 
Sbjct: 476 AACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMA 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LL
Sbjct: 536 EFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLL 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       L
Sbjct: 596 YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 655

Query: 656 LEIARKDAKHILTQDPDLTS 675
           L   R  A+ +L + P   S
Sbjct: 656 LPAVRDAAQALLERWPQHVS 675


>gi|229527364|ref|ZP_04416756.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 12129(1)]
 gi|229334996|gb|EEO00481.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 12129(1)]
 gi|327485181|gb|AEA79588.1| ATP-dependent DNA helicase RecG [Vibrio cholerae LMA3894-4]
          Length = 692

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 262/675 (38%), Positives = 392/675 (58%), Gaps = 26/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + ++HP Y F     + D+  P +  VY    GL     + +  +AL+ L    + 
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDIE-PNLTPVYPTTEGLRQLTLRNLTNQALALLDKSAVQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L 
Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+ + + M+R++QGDV
Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +   
Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGK 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K     
Sbjct: 358 ARETQLARIASGEVKMVVGTHALFQEQVSFDNLALVIIDEQHRFGVHQRLELREKGAKQG 417

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++  
Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERIRHA 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +
Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQTVMQA 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+
Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657

Query: 657 EIARKDAKHILTQDP 671
              ++ A+HI  + P
Sbjct: 658 PQVQRIARHIHERYP 672


>gi|89092443|ref|ZP_01165397.1| ATP-dependent DNA helicase RecG [Oceanospirillum sp. MED92]
 gi|89083531|gb|EAR62749.1| ATP-dependent DNA helicase RecG [Oceanospirillum sp. MED92]
          Length = 692

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 258/679 (37%), Positives = 383/679 (56%), Gaps = 26/679 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERIV 70
           P+S  +GVG    L   K+ N G     R I DLLF+ P  + DR     I  +      
Sbjct: 9   PVSELKGVGTALEL---KLHNLG----IRTIQDLLFHLPLRYQDRTRIVPIGSLRPSDES 61

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            I G + + +     KRR     + DGTG +TL FF+      KN    G +I   G+ +
Sbjct: 62  VIEGEV-KIADISRGKRRSLLCRIQDGTGTLTLRFFHFSAAQ-KNNLKPGTRIRCFGEAR 119

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP--VL 185
              + + +VHP Y   +S ++  P+ E    +Y    GL     + +  +AL  L    L
Sbjct: 120 TGASGLEIVHPEYKKVDSDEL-VPVEECLTPIYPTTEGLHQGRLRALTDQALDYLKRGAL 178

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALL 241
            E I + L Q   FP + +A   +H P    D     E   PA+ RLA++EL++  ++LL
Sbjct: 179 QELIPEQLRQGWKFPGLNDAVAYLHRPPVDVDQHLLLEGLHPAQRRLAFEELVSHHLSLL 238

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R++ +K+    +   G + +  L+ +PF  T +Q+   +++ +D++    MLR++QGD
Sbjct: 239 KLRQKTRKKGAPELPGNGDLVKPFLQQLPFPLTGAQQRVSQEVARDLALPYPMLRLVQGD 298

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA +A   +VE+G QA +MAP  ILA+QH+     + +   I V  + G +  
Sbjct: 299 VGSGKTVVAALAALQSVESGLQAAVMAPTEILAEQHFINFSNWLEPLGIKVAWLAGKLKG 358

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-- 419
             R+  LE I  G+A +++GTHALFQ+ + +  L LV++DEQHRFGV QRL L +K    
Sbjct: 359 KQRKTQLEAIREGEARVVVGTHALFQEEVVFSDLGLVVIDEQHRFGVHQRLSLREKGRNG 418

Query: 420 --APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             APH L+MTATPIPRTL +++  D+D S I E P GR P+ TV+I  NR DEVI+R++ 
Sbjct: 419 ELAPHQLIMTATPIPRTLTMSAYADLDCSIIDELPPGRTPVNTVVIADNRRDEVIQRVRK 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             +E ++ YW+C  IEE +    ++       L E      I ++HGRM   +K  +M  
Sbjct: 479 ACAEKRQVYWVCTLIEESEALQCQAAEVTAEQLTEALPELRIGLVHGRMKPAEKADIMQK 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L+Y
Sbjct: 539 FKSAELDLLVATTVIEVGVDVPNASVMIIENPERLGLAQLHQLRGRVGRGSVESFCVLMY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLS     RL+V++ T DGF IAE+DL+ R  GE+LG +Q+G+ +F +A  +    +L
Sbjct: 599 QAPLSNQGRERLAVMRETTDGFRIAEKDLELRGPGEVLGTRQTGVMQFKMADLQRDSDML 658

Query: 657 EIARKDAKHILTQDPDLTS 675
           +  +  A+  L + PD   
Sbjct: 659 DKVKMLAQQ-LQEWPDFAD 676


>gi|296107648|ref|YP_003619349.1| ATP-dependent DNA helicase RecG [Legionella pneumophila 2300/99
           Alcoy]
 gi|295649550|gb|ADG25397.1| ATP-dependent DNA helicase RecG [Legionella pneumophila 2300/99
           Alcoy]
          Length = 690

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 251/668 (37%), Positives = 386/668 (57%), Gaps = 30/668 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           GVG   +   +K+  CG        DLLF+ P  + DR     I ++       I G++ 
Sbjct: 11  GVGPTIA---AKLAKCGIFT---IQDLLFHLPYKYQDRTRITPIQDLRSNEWCVIAGHVC 64

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
           + +  +  KR      + D TG + L FF+   + ++        I   G+++   N++ 
Sbjct: 65  K-TEIKYGKRMMLNCYVEDKTGIVKLRFFHFNKQQIQ-ALNNSAMIRAFGEVRGFNNQLE 122

Query: 138 MVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSR----LPVLPEWIE 190
           M+HP Y   + Q+ +F + E    +Y    GL+    ++++  AL +    L  L EW+ 
Sbjct: 123 MIHPEYQLID-QESDFHVEETLTPIYPSTQGLTQTRLRQLVKIALEQSEHELHQL-EWMS 180

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAGQIALLLMR 244
           +  LQ+ +F  + EA  ++HNP    D   ++      PA +RL +DELLA Q+++   R
Sbjct: 181 EKQLQENNFYDLGEAIKLLHNP--PPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFAR 238

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +   K     I  +  I ++ + ++PFS T +Q+   K+I  D++Q   MLR+LQGDVG+
Sbjct: 239 QSRSKLQAPAILFDNAIHKRFIESLPFSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVGA 298

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++A +A   A+  G Q   MAP  +L++QH   + K+ +   I V  ++G M    R
Sbjct: 299 GKTIIAALAALQAISQGFQVAFMAPTDLLSEQHTNSLSKWLEPIGINVLRLSGKMKTTER 358

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---- 420
           + AL  +      +I+GTHALFQ+ +++ +L LVI+DEQHRFGV+QRL L QK       
Sbjct: 359 KNALAALQDNSCQLIVGTHALFQEQVEFARLGLVIIDEQHRFGVEQRLLLQQKGQLNQLI 418

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH LLMTATPIPRTL ++    +DIS I E P GR PI T ++  ++ + +IERL+  ++
Sbjct: 419 PHQLLMTATPIPRTLSMSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAIA 478

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKN 539
            GK+AYW+C  IEE ++    +  +    L E  + + + ++HGRM  ++KE+ M +FK 
Sbjct: 479 NGKQAYWVCTLIEESEKLQCIAATDTSKKLQEQLSFARVGLVHGRMKALEKEATMAAFKQ 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+LLY  P
Sbjct: 539 GEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSP 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RL ++++T DGFLI+E+DL+ R  GEILG +Q+G  +F IA  +   +L  I 
Sbjct: 599 LSQQGAERLKIMRSTTDGFLISEKDLELRGSGEILGTRQTGFRQFKIANLQRDKTLFAIL 658

Query: 660 RKDAKHIL 667
           R  AK ++
Sbjct: 659 RPIAKQLM 666


>gi|153871444|ref|ZP_02000613.1| ATP-dependent DNA helicase RecG [Beggiatoa sp. PS]
 gi|152072089|gb|EDN69386.1| ATP-dependent DNA helicase RecG [Beggiatoa sp. PS]
          Length = 687

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 265/686 (38%), Positives = 399/686 (58%), Gaps = 40/686 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDR-HYRPKIS-EISE 66
           +  P++T  GV +  +  L+++        T+  D+LF+ P  + +R   +P I  EI E
Sbjct: 1   MITPINTLHGVNEPIAEQLARL----GIQTTQ--DMLFHLPLRYENRTQIKPLIDLEIGE 54

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFY---RKTEMLKNVFFEGRKI 123
              V + G I Q +  +  KRR +  +L+DGTG I L FF+    + E LK     G ++
Sbjct: 55  S--VLVEGTI-QTAEVKFGKRRSFICMLSDGTGTIMLRFFHFYPSQREKLKP----GVRL 107

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEAL 179
              G+I++    + +VHP     +S + + PL+E     +Y   + L+  LF  +I +  
Sbjct: 108 RCFGEIRQGYQCLELVHPQVECIDSAN-SAPLLEEHLTPIYPSNSHLNQALFYSLIDQIF 166

Query: 180 SR---LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDE 232
            +   +  +PE I K      +   + EA  I+H P          E   PA+ RL ++E
Sbjct: 167 EQHEPIDYIPELIRKPF----NLLPLGEALQILHRPPPDISLQALQEGQHPAQRRLVFEE 222

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  ++L +++ Q        ++ EG++  K+L  +PF  TK+Q+    +I  D+   +
Sbjct: 223 LLAFHLSLYMLKAQAHSRKAPSLDNEGELIPKLLAQLPFQLTKAQQQVHAEIATDLHATH 282

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R+LQGDVGSGKT+VA +    A+E+G Q  +MAP  +L++QH +   ++ +  +I +
Sbjct: 283 PMQRLLQGDVGSGKTIVAALCALQAIESGYQVAVMAPTELLSEQHKQTFSQWLEPLEIEL 342

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             +TG++ +  R +ALE+IA GQA ++IGTHALFQ  +++  L LVIVDEQHRFGV QRL
Sbjct: 343 TWLTGSLTKKKREQALEKIASGQAALVIGTHALFQKEVEFANLGLVIVDEQHRFGVHQRL 402

Query: 413 KLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L  K T     PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TVIIP  R 
Sbjct: 403 ALRNKGTQSGLYPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVIIPNTRR 462

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           DE+IER+  V   E ++AYW+C  IEE +   F++  E    L +   +  I ++HGR+ 
Sbjct: 463 DEIIERINHVCQHEDRQAYWVCTLIEESEVMQFQAAEETVEQLQKALPALQIGLVHGRIK 522

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +KE VM+ FK     LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 523 PKEKEEVMEKFKQRQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 582

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLS+ + +RL+ +++  DGFLIA+ DL+ R  G++LG +Q G+    I
Sbjct: 583 AVQSYCVLLYQQPLSEIAKSRLATIRDHHDGFLIAQRDLEIRGPGDVLGTRQKGVLNLRI 642

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A  +  + LL    +  K +L + P+
Sbjct: 643 ADLQRDEDLLPEVVEAGKILLEKFPE 668


>gi|52842250|ref|YP_096049.1| ATP-dependent DNA helicase RecG [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629361|gb|AAU28102.1| ATP dependent DNA helicase RecG [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 690

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 251/668 (37%), Positives = 385/668 (57%), Gaps = 30/668 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           GVG   +   +K+  CG        DLLF+ P  + DR     I ++       I G++ 
Sbjct: 11  GVGPTIA---AKLAKCGIFT---IQDLLFHLPYKYQDRTRITPIQDLRSNEWCVIAGHVY 64

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
           + +  +  KR      + D TG + L FF+   + ++        I   G+++   N + 
Sbjct: 65  K-TEIKYGKRMMLNCYVEDKTGVVKLRFFHFNKQQIQ-ALNNSTMIRAFGEVRGFNNHLE 122

Query: 138 MVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSR----LPVLPEWIE 190
           M+HP Y   + Q+ +F + E    +Y    GL+    ++++  AL +    L  L EW+ 
Sbjct: 123 MIHPEYQLID-QESDFHVEETLTPIYPSTQGLTQTRLRQLVKIALEQSEHELHQL-EWMS 180

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAGQIALLLMR 244
           +  LQ+ +F  + EA  ++HNP    D   ++      PA +RL +DELLA Q+++   R
Sbjct: 181 EKQLQENNFYDLGEAIKLLHNP--PPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFAR 238

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +   K     I  +  I ++ + ++PFS T +Q+   K+I  D++Q   MLR+LQGDVG+
Sbjct: 239 QSRSKLQAPAILFDNAIHKRFIESLPFSLTNAQQRVFKEISFDLTQSKPMLRLLQGDVGA 298

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++A +A   A+  G Q   MAP  +L++QH   + K+ +   I V  ++G M    R
Sbjct: 299 GKTIIAALAALQAISQGFQVAFMAPTDLLSEQHTNSLSKWLEPIGINVLRLSGKMKTTER 358

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---- 420
           + AL  +      +I+GTHALFQ+ +++ +L LVI+DEQHRFGV+QRL L QK       
Sbjct: 359 KNALAALQDNSCQLIVGTHALFQEQVEFARLGLVIIDEQHRFGVEQRLLLQQKGQLNQLI 418

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH LLMTATPIPRTL ++    +DIS I E P GR PI T ++  ++ + +IERL+  ++
Sbjct: 419 PHQLLMTATPIPRTLSMSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAIA 478

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKN 539
            GK+AYW+C  IEE ++    +  +    L E  + + + ++HGRM  ++KE+ M +FK 
Sbjct: 479 NGKQAYWVCTLIEESEKLQCMAATDTSKKLQEQLSFARVGLVHGRMKALEKEATMAAFKQ 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+LLY  P
Sbjct: 539 GEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSP 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RL ++++T DGFLI+E+DL+ R  GEILG +Q+G  +F IA  +   +L  I 
Sbjct: 599 LSQQGAERLKIMRSTTDGFLISEKDLELRGSGEILGTRQTGFRQFKIANLQRDKTLFAIL 658

Query: 660 RKDAKHIL 667
           R  AK ++
Sbjct: 659 RPIAKQLV 666


>gi|157825974|ref|YP_001493694.1| ATP-dependent DNA helicase RecG [Rickettsia akari str. Hartford]
 gi|157799932|gb|ABV75186.1| ATP-dependent DNA helicase RecG [Rickettsia akari str. Hartford]
          Length = 743

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 266/717 (37%), Positives = 390/717 (54%), Gaps = 82/717 (11%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+ + TF  + +     L ++      N  R  DLLFY P S+ ++   P ++E+ +  
Sbjct: 9   LFSSIKTFINIREDTVYALKRL----GINNIR--DLLFYLPVSYKNKILWPNLTEVRDGE 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+  T  + +  +   +  +P KI  +  TG + L+FF++    + N    G K  ++GK
Sbjct: 63  IIQ-TEIVIESVNLPKKSNQPLKITASHDTGSLLLVFFHKPPPFIFNKLKVGTKHIISGK 121

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           ++   + + + HP +I       N  L   IE +YSL   LS       I++A+      
Sbjct: 122 VQFFDHYLQISHPEFI------TNPKLAKEIEPIYSLTYLLSNKQLYSYIIKAIEIFEEK 175

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHN---------------------PRKAKDFEWTSPA 224
            + +E D   K+    I ++ N++H                      PR ++       +
Sbjct: 176 CKVVE-DKEVKEYLDEILQSLNVLHVREVVIQLLDHGINKSIKKDWIPRSSRGMTQDKSS 234

Query: 225 R-------ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           R       ++LA  EL+A QI+L  +R Q  +  G        I   IL  + F  T+ Q
Sbjct: 235 RYDTESFKKQLAAKELIANQISLFNVRTQMSRRQGNIYMKAAAIQANILNELGFELTQYQ 294

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +  I++I  + S K  M+++LQGDVGSGKTLVAL+ +   V+AG QA +MAP  +LA QH
Sbjct: 295 KQVIEEIEFEQSDKVEMMKLLQGDVGSGKTLVALLTIVNVVKAGFQATLMAPTDLLANQH 354

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           YEF  K  +NT I + ++TG +  A R+  ++++ +G+  I++GTHALFQ+ + + KL  
Sbjct: 355 YEFCVKALKNTNIRIALLTGKILGAARKNIMQQLKNGEIDILVGTHALFQEKVSFKKLGY 414

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +++DEQHRFGVQQRL L  K   P VL+MTATPIPR+L LT  GD+ ISK+  KP  R P
Sbjct: 415 IVIDEQHRFGVQQRLNLINKGLNPDVLVMTATPIPRSLALTMFGDMSISKLMGKPKNRLP 474

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE------------------------ 493
           I T  + +N+I+ +IE +   L  G++ YWICP +E                        
Sbjct: 475 IATNTMSVNKIEHIIESINKKLIAGERVYWICPLVEQSPSHDVIPRLDPGIQKKIKKDWI 534

Query: 494 -----------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                      E+++S    V+ RFNS+   +     IIHG+M +  KE +M  FK G  
Sbjct: 535 LCRSHGMTMEEEQEDSLLMDVINRFNSIENIYQGYTGIIHGKMKNEQKEQIMKQFKAGEI 594

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LS 601
           K+L+ATTVIEVGIDV +A++IIIENAE FGLAQLHQLRGRVGRG   S CILLY+P  L 
Sbjct: 595 KILVATTVIEVGIDVPEATLIIIENAERFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLG 654

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ-PELHDSLLE 657
           K +  R  ++K T DGF IAE+DLK R  GE+LG+KQSG  +F  A   E +D LL+
Sbjct: 655 KVARGRFEIMKQTNDGFYIAEQDLKLRGSGEVLGVKQSGEMEFFFADLAEDYDLLLK 711


>gi|167854894|ref|ZP_02477670.1| ATP-dependent DNA helicase recG [Haemophilus parasuis 29755]
 gi|167853961|gb|EDS25199.1| ATP-dependent DNA helicase recG [Haemophilus parasuis 29755]
          Length = 693

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 263/677 (38%), Positives = 383/677 (56%), Gaps = 28/677 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   S  LS+I    N       DLLF+ P  + DR     I+++  E   T
Sbjct: 10  PLTALSGVGAAISEKLSRI-GINNVQ-----DLLFHLPLRYEDRTRITPIADVRPESFAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G++ Q +  Q  +R      ++DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  VEGFV-QLTEVQFGRRPILSTTISDGTSKITLKFFNFNAGM-KNSLATGVRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    M HP Y I   +Q +     +  +Y    GL     +K+  +AL+ L    E +
Sbjct: 122 GRFMAEMHHPEYQIIRGNQPLELAETLTPIYPTTEGLKQASLRKLTDQALALL----ERV 177

Query: 190 E-KDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALL 241
           +  +LL  +  P   S+ EA  ++H P  +   E       PA++RL ++ELLA  +A+ 
Sbjct: 178 QVAELLPDEFNPHKYSLKEALQLLHRPPPSVSSELLDKGEHPAQKRLIFEELLAHNLAMQ 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P+  +  + Q+ L  +PF PT +Q     +I QD+++   M+R++QGD
Sbjct: 238 QVRMGVQQHFAEPLCYQTDLKQRFLATLPFQPTNAQSRVTAEIEQDLAKPFPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +  
Sbjct: 298 VGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHAHNFANWLRPFGIEVGWLAGKVKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R   LE I +G   +IIGTHALFQD ++++ L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARTAQLEAIKNGDVQMIIGTHALFQDQVEFHHLALVIIDEQHRFGVHQRLTLREKGAKG 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-K 476
              PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DEV+ R+ +
Sbjct: 418 DVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEVVRRVYQ 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+++M 
Sbjct: 478 ACKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQAIMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+L+
Sbjct: 538 EFKAADIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLM 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PL K S  RL VL++++DGF+IAE+DL+ R  GE+LG KQ+GM +F IA       +
Sbjct: 598 YKAPLGKISTKRLQVLRDSQDGFVIAEKDLEIRGPGEVLGTKQTGMAEFKIANLMRDRKM 657

Query: 656 LEIARKDAKHILTQDPD 672
           + + +  AK +  + PD
Sbjct: 658 IPLVQSYAKQLTLKYPD 674


>gi|110833029|ref|YP_691888.1| ATP-dependent DNA helicase RecG [Alcanivorax borkumensis SK2]
 gi|110646140|emb|CAL15616.1| ATP-dependent DNA helicase RecG [Alcanivorax borkumensis SK2]
          Length = 703

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 266/679 (39%), Positives = 380/679 (55%), Gaps = 34/679 (5%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           +GVG   +  L+K+   G  N     DLLF+ P  + DR     I  +  E  V I G +
Sbjct: 15  KGVGPAAAEKLAKL---GLHN---LEDLLFHLPFRYEDRTRISPIGSLRPETGVVIEGQV 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
              +     +RR     + DGTG +TL F++      KN    GR I V G+ +     +
Sbjct: 69  MA-ADVIFGRRRSLLCKVADGTGMVTLRFYHFSAAQ-KNTLERGRTIRVYGEPRPGSAGL 126

Query: 137 IMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPVLP--EWIE 190
              HP Y   +  D   P +E     VY    G+S    + +  +AL  L   P  E I 
Sbjct: 127 EFYHPEYQL-DYADSGLPPLEKALTPVYPTTDGVSQKTLRNLTGQALKYLQAHPPQELIP 185

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQ 246
             LL +   PS+A+A + +HNPR         E   PA +RL  +E++A Q+ +L  ++ 
Sbjct: 186 AQLLDQSGLPSLADALSKLHNPRPDDPVNLLLEGKHPAVKRLVMEEMVAHQLGML-QKRA 244

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            +K    P      + +K+  ++PF+ T +Q+  I +++ DM Q + MLR++QGDVGSGK
Sbjct: 245 GQKAFHAPRLGGQTLFEKLQDSLPFNLTGAQKRVIGELMGDMKQAHPMLRLVQGDVGSGK 304

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVA  A  AA+E+G Q  +MAP  +LA+QH E    +     I V  + G++    RR+
Sbjct: 305 TLVAAAAALAAIESGYQVALMAPTELLAEQHRENFHHWLAPLGIKVHWLAGSLGVKARRE 364

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-------- 418
               +A G AHI++GTHALFQ+++Q+++L L I+DEQHRFGVQQRL L +K         
Sbjct: 365 TNAALADGSAHIVVGTHALFQEAVQFHRLGLTIIDEQHRFGVQQRLALREKGREDNAHGI 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L++TATPIPRTL ++  GD+D S I E P GRKPI T+++P +R  +VIER+   
Sbjct: 425 QVPHQLVLTATPIPRTLAMSVYGDLDTSVIDEMPPGRKPIDTLVLPESRRPQVIERINDA 484

Query: 479 LSEGKK-----AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
                K     AYW+C  IEE +E   ++    F  L        + ++HGRM   +K  
Sbjct: 485 CRPSAKKKNTQAYWVCTLIEESEELQAQAAEATFAELQIALPELKVELVHGRMKAKEKAE 544

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M  F  G  +LLIATTVIEVG+DV +A+++++ENAE  GLAQLHQLRGRVGRG E S C
Sbjct: 545 RMARFSRGEAQLLIATTVIEVGVDVPNATLMVMENAERLGLAQLHQLRGRVGRGAEQSYC 604

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY  PLS     RL+V+++T DGF+IAEEDLK R  GE LG +Q+G   F IA     
Sbjct: 605 LLLYKNPLSHTGKRRLAVMRDTTDGFVIAEEDLKLRGPGEWLGTRQTGDLAFRIADLVRD 664

Query: 653 DSLLEIARKDAKHILTQDP 671
           ++L+E A++ A  ++   P
Sbjct: 665 EALMEPAKEIANKLMQDYP 683


>gi|254507298|ref|ZP_05119434.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus 16]
 gi|219549758|gb|EED26747.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus 16]
          Length = 692

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 262/677 (38%), Positives = 395/677 (58%), Gaps = 28/677 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 9   PLTSLTGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + L+DG G ITL FF   T  +KN F EG+ +   G++K+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKLSDGNGTITLRFF-NFTAAMKNNFAEGKTVHAYGEVKR 120

Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
               + +VHP Y F+      DV   L   VY    GL     + +  +AL+   +L + 
Sbjct: 121 GGFGLEIVHPDYKFYAPNQKTDVEETLT-PVYPTTEGLRQITLRNLTEQALA---LLDKS 176

Query: 189 IEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241
             ++LL    +    ++ +A + IH P    D     E  +PA+ RL  +ELLA  +++L
Sbjct: 177 TVQELLPAGLYDHQITLGQALHTIHRPPPNMDLDQFDEGKNPAQIRLIMEELLAQNLSML 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R +  ++  +P+    ++ Q++L  +PF+PT +Q   + +I QD+++ + M+R++QGD
Sbjct: 237 SVRSKGLQDAALPLGESHQLKQQLLNQLPFTPTNAQARVVGEIEQDLAKPHPMMRLVQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +  
Sbjct: 297 VGSGKTLVAALAAVRALEHGYQVALMAPTELLAEQHAINFANWFEPMGIKVGWLAGKLKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--- 418
             +   L RIA G+A +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K    
Sbjct: 357 KAKEAELARIASGEAQMVVGTHALFQEHVAFDHLALVIIDEQHRFGVHQRLELREKGEKQ 416

Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
            T PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++ 
Sbjct: 417 GTYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRN 476

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM 
Sbjct: 477 ACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQ 536

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 537 DFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 596

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YH PLSK +  RL+VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L
Sbjct: 597 YHSPLSKTAQKRLAVLRESNDGFVIAQRDLEIRGPGELLGTKQTGIADFKIADLVRDQRL 656

Query: 656 LEIARKDAKHILTQDPD 672
           +   ++ A+HI    PD
Sbjct: 657 IPEVQRIARHIHDHYPD 673


>gi|170078462|ref|YP_001735100.1| ATP-dependent DNA helicase RecG [Synechococcus sp. PCC 7002]
 gi|169886131|gb|ACA99844.1| ATP-dependent DNA helicase [Synechococcus sp. PCC 7002]
          Length = 822

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 254/681 (37%), Positives = 398/681 (58%), Gaps = 33/681 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    G+G K S  L+K+       ET   D LFY+P   ID   + KI+++     VT
Sbjct: 128 PLMYLPGIGPKRSNQLAKL-----GLET-VRDALFYYPRQHIDYAKQVKITDLEAGETVT 181

Query: 72  ITGYISQHSSF---QLQKRRPYKILLNDGTGEITLLFFYRKT--------EMLKNVFFEG 120
           + G++ + + F   + QK   +++ L D +G I L  FY  T        E +K  + +G
Sbjct: 182 LVGHVVRCNIFTSPKNQKLSIFELWLRDSSGRIKLSRFYAGTRYSNRGWQEKMKRQYPQG 241

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE-----AVYSLPTGLSVDLFKKII 175
             I  +G +KK K  + + +P     +S   +   ++      VY L  G+  DL +K++
Sbjct: 242 VAIAASGLVKKNKYGLTLDNPEIEVLDSSGADIKSLKIGRVLPVYPLTEGVPADLIRKVV 301

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           + +L  +  L +       ++     + EA   IH P  A   E    AR+RL +DE   
Sbjct: 302 INSLPAIAQLKDAFPTAFREQHGLMKLQEAIANIHFPENA---EILQQARQRLVFDEFFY 358

Query: 236 GQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
            Q+  L  R+Q K      + + +G++ ++  + +PF  T +Q+  I +IL D++Q   M
Sbjct: 359 LQLGFLQRRQQEKASQKSAVFIPQGELIKRFEKLLPFQLTNAQQRVITEILADLAQSTPM 418

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++QGDVG+GKT+VA+ A+ AA+++G QA +MAP  +LA+QHY  +  +     + VE+
Sbjct: 419 NRLVQGDVGAGKTVVAVFAILAAIQSGYQAALMAPTEVLAEQHYRKLVGWFNLLHLPVEL 478

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+     RR+   ++  G+  +++GTHAL +D +Q+  L LV++DEQHRFGVQQR +L
Sbjct: 479 LTGSTKTKKRREIHSQLQTGELKVLVGTHALIEDPVQFQNLGLVVIDEQHRFGVQQRGRL 538

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K  APHVL MTATPIPR+L LT  GD+D+S+I E P GR+PI T +I      +  E 
Sbjct: 539 LAKGKAPHVLTMTATPIPRSLALTLHGDLDVSQIDELPPGRQPIDTRVIKGGDRHKAYEL 598

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKES 532
           +K  +++G++AY I P IEE ++   ++ V     L E    S  + ++HGRM   +K++
Sbjct: 599 IKREVAQGRQAYVIFPLIEESEKLEAKAAVAEHQRLSEQVFKSFNVGLLHGRMKSEEKDA 658

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            +++F++    ++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG+  S C
Sbjct: 659 ALNAFRDNQNHIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGQHQSHC 718

Query: 593 ILLYHPPLSKN--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
           +L+ +   SKN  S TRL VL+ + DGF I+E DL+ R  GE+LG KQSG+P F +A   
Sbjct: 719 LLVTN---SKNPDSQTRLRVLEQSTDGFFISEMDLRLRGPGEVLGTKQSGLPDFALASLT 775

Query: 651 LHDSLLEIARKDAKHILTQDP 671
               +L IAR+ A+ +L  DP
Sbjct: 776 EDQEVLLIARQAAEQLLKIDP 796


>gi|90407853|ref|ZP_01216029.1| ATP-dependent DNA helicase RecG [Psychromonas sp. CNPT3]
 gi|90311028|gb|EAS39137.1| ATP-dependent DNA helicase RecG [Psychromonas sp. CNPT3]
          Length = 690

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 271/677 (40%), Positives = 390/677 (57%), Gaps = 30/677 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS   GVG K    L+KI      N    +DLLF+ P  + DR     IS++ +   V+
Sbjct: 7   PLSALHGVGIKMLEKLAKI------NMHNVVDLLFHLPLHYQDRACVYPISQLQDGMQVS 60

Query: 72  ITGYISQHSSFQLQK--RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G I    S Q+QK  RR  K  + D +G   L FF+      +N F EGR I   G+ 
Sbjct: 61  IAGRIV---SCQVQKGKRRILKCKIRDESGIACLNFFHFNVAQ-QNAFTEGRLIQCFGEF 116

Query: 130 KKLKNRIIMVHP--HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--L 185
           K+    + + HP  H+I    ++     +  VY    GL  +  +K+++++L  L    +
Sbjct: 117 KRGYQGVEVTHPEYHFIDQRQENTQGGHLTPVYPSTDGLKQNNLRKLVLQSLQLLQQNGI 176

Query: 186 PEWIEKDLLQKKSFP-SIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIAL 240
            E +   LL   S P S+ +A   +H P      E     + PA++RL  +ELLA Q+ +
Sbjct: 177 EEVLPTHLL---SHPLSLQDALLYLHQPPTDACIEQLEARSHPAQQRLILEELLAQQVNM 233

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L+MR   +K   + I     +A K+L  +PF+ T++Q     +I  D+ +   M+R++QG
Sbjct: 234 LMMRSAVQKNKSMDIAKSTILAPKLLHALPFTATQAQLRVGIEIADDLQKNIPMMRLVQG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA +A  + +EAG Q  +MAP  +LA+QH    + +     + V +++G M 
Sbjct: 294 DVGSGKTLVAALAALSVIEAGYQVALMAPTELLAEQHRLTFQNWFAPLGVRVGMLSGKMK 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418
              +R     I  G A ++IGTHALF D++ +  L L+IVDEQHRFGV QRL L  K   
Sbjct: 354 VKEKRSQTLDIQLGLAQMVIGTHALFSDNVVFKNLQLIIVDEQHRFGVHQRLALLSKGQS 413

Query: 419 --TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL- 475
              APH L MTATPIPRTL +T+  D+ IS I E PAGR P++T ++P  R  ++I+R+ 
Sbjct: 414 GDVAPHQLTMTATPIPRTLAMTAYADLKISVIDELPAGRMPVQTTVLPEMRRGDIIKRVY 473

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           +   ++G++AYW+C  I E +    ++  +  N+L        I ++HGRMS ++K+ VM
Sbjct: 474 QACKNQGRQAYWVCTLICESEVLQCQAAEDIANNLQLSLVDLRIGLVHGRMSALEKQYVM 533

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           D+FK+G   LL+ATTVIEVG+DV +AS++IIENAE  GLAQLHQLRGRVGRG   S C+L
Sbjct: 534 DAFKSGELDLLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGRGTVASHCVL 593

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PLS  +  RL +L+ + DGF IAE+DL  R  GE+LG KQ+G+  F IA      S
Sbjct: 594 LYKDPLSNVAKKRLQILRRSNDGFYIAEQDLLIRGPGEVLGTKQTGVASFKIADLLRDQS 653

Query: 655 LLEIARKDAKHILTQDP 671
           LL   ++ A  +LTQ P
Sbjct: 654 LLPDVQRLAGLLLTQHP 670


>gi|156936175|ref|YP_001440091.1| ATP-dependent DNA helicase RecG [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534429|gb|ABU79255.1| hypothetical protein ESA_04074 [Cronobacter sakazakii ATCC BAA-894]
          Length = 693

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 263/688 (38%), Positives = 389/688 (56%), Gaps = 30/688 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR   L+ +  PLS+  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MRGRLLDAV--PLSSLTGVGASQSAKLAKI------GLHTIQDLLLHFPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           IS++      T+ G +  + +     RR     ++DGTG +T+ FF     M KN    G
Sbjct: 53  ISDLLPGVYATVEGEVL-NCNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIV 176
           R++   G+ K+ K    M+HP Y      DV+ P ++     VY    G+     +K+  
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRIQG--DVSTPEMQETLTPVYPTTEGVRQATLRKLTD 168

Query: 177 EALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNP---RKAKDFE-WTSPARERLAY 230
           +AL  L    + E +  +L Q     S+ EA   +H P    K +D E    PA+ RL  
Sbjct: 169 QALELLETCAITELLPPELSQ--GLMSLPEALRTLHRPPPDMKLEDLESGQHPAQRRLIL 226

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           +ELLA  +++L +R   ++    P+     + Q++L ++PF PT +Q   + +I +DM+ 
Sbjct: 227 EELLAHNLSMLALRAGAQRYHAQPLEARDALKQQLLASLPFKPTGAQARVVAEIERDMAL 286

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I
Sbjct: 287 DIPMMRLVQGDVGSGKTLVAALAALRAIANGKQVALMAPTELLAEQHANNFRNWFAPLGI 346

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V  + G      R+   E IA GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV Q
Sbjct: 347 EVGWLAGKQKGKARQAQQEAIASGQVSMVVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQ 406

Query: 411 RLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           RL L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  
Sbjct: 407 RLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDT 466

Query: 467 RIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524
           R  ++IER++   L EG++AYW+C  IEE +    ++    +  L       ++ ++HGR
Sbjct: 467 RRGDIIERVRSACLEEGRQAYWVCTLIEESELLEAQAAEATWEELKTTLPELNVGLVHGR 526

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVG
Sbjct: 527 MKPAEKQAVMQAFKQGEMHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVG 586

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RG   S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F
Sbjct: 587 RGAVASHCVLLYKSPLSKTAQIRLQVLRDSNDGFMIAQKDLEIRGPGELLGTRQTGNAEF 646

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPD 672
            +A      +++   ++ A+HI  + P+
Sbjct: 647 KVADLLRDQAVIPEVQRIARHIHERYPE 674


>gi|238750785|ref|ZP_04612283.1| ATP-dependent DNA helicase recG [Yersinia rohdei ATCC 43380]
 gi|238710929|gb|EEQ03149.1| ATP-dependent DNA helicase recG [Yersinia rohdei ATCC 43380]
          Length = 693

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 259/676 (38%), Positives = 389/676 (57%), Gaps = 26/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST  GVG   +  L+K+       ET   DLL + P  + DR    +I ++     VT
Sbjct: 10  PLSTLSGVGASQAGKLAKL-----GLET-IQDLLLHLPLRYEDRTQLYRIGDLLPGLCVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + S     +RR     + DG+G +TL FF     M KN    G+ +   G+ K+
Sbjct: 64  VEGEVLR-SDISFGRRRMMTCQITDGSGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
                 ++HP Y  H  +++   L E+   VY    G+     +K+I +AL+ L   V+ 
Sbjct: 122 GNTGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQATLRKLIDQALAMLDTSVIA 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242
           E +  +L   +S  S+ EA + +H P    +  D E    PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPIEL--SRSLISLPEAIHTLHRPPANIQLTDLEQGKHPAQRRLIMEELLAHNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   +    +P+  E  + Q+ L  +PF+PT +Q+  + +I QDM+    M+R++QGDV
Sbjct: 239 VRAGAQSYRALPLLAEDNLKQRFLAALPFTPTGAQQRVVAEIEQDMTHNYPMMRLIQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V  + G     
Sbjct: 299 GSGKTLVAALAALRAIAQGKQVALMAPTELLAEQHANTFRQWLEPLGLEVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R    E +A GQ  +++GTHA+FQ+ +++  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARLAQQEAVASGQVAMVVGTHAMFQEQVKFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  +VI+R+K  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L EG++AYW+C  IEE +    ++       L        + ++HGRM   +K++VM +
Sbjct: 479 CLEEGRQAYWVCTLIEESELLEAQAAEVTCEELRIALPEIKVGLVHGRMKGPEKQAVMLA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +++
Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSTEFKVADLLRDQAMI 658

Query: 657 EIARKDAKHILTQDPD 672
              ++ A+H+  Q P+
Sbjct: 659 PEVQRVARHLHQQYPE 674


>gi|54297960|ref|YP_124329.1| ATP-dependent DNA helicase RecG [Legionella pneumophila str. Paris]
 gi|53751745|emb|CAH13167.1| ATP-dependent DNA helicase RecG [Legionella pneumophila str. Paris]
          Length = 690

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 251/668 (37%), Positives = 385/668 (57%), Gaps = 30/668 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           GVG   +   +K+  CG        DLLF+ P  + DR     I ++       I G++ 
Sbjct: 11  GVGPTIA---AKLAKCGIFT---IQDLLFHLPYKYQDRTRITPIQDLRSNEWCVIAGHVC 64

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
           + +  +  KR      + D TG + L FF+   + ++        I   G+++   N++ 
Sbjct: 65  K-TEIKYGKRMMLNCYVEDKTGVVKLRFFHFNKQQIQ-ALNNSTMIRAFGEVRGFNNQLE 122

Query: 138 MVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSR----LPVLPEWIE 190
           M+HP Y   + Q+ +F + E    +Y    GL+    ++++  AL +    L  L EW+ 
Sbjct: 123 MIHPEYQLID-QESDFHVEETLTPIYPSTQGLTQTRLRQLVKIALEQSEHELHQL-EWMS 180

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAGQIALLLMR 244
           +  LQ+ +F  + EA  ++HNP    D   ++      PA +RL +DELLA Q+++   R
Sbjct: 181 EKQLQENNFYDLGEAIKLLHNP--PPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFAR 238

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +   K     I  +  I ++ + ++PFS T +Q+   K+I  D++Q   MLR+LQGDVG+
Sbjct: 239 QSRSKLQAPAILFDNAIHKRFIESLPFSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVGA 298

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++A +A   A+  G Q   MAP  +L++QH   + K+ +   I V  ++G M    R
Sbjct: 299 GKTIIAALAALQAISQGFQVAFMAPTDLLSEQHTNSLSKWLEPIGINVLRLSGKMKATER 358

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---- 420
           + AL  +      +I+GTHALFQ+ +++  L LVI+DEQHRFGV+QRL L QK       
Sbjct: 359 KNALAALQDNSCQLIVGTHALFQEQVEFACLGLVIIDEQHRFGVEQRLLLQQKGQLNQLI 418

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH LLMTATPIPRTL ++    +DIS I E P GR PI T ++  ++ + +IERL+  ++
Sbjct: 419 PHQLLMTATPIPRTLSMSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAIA 478

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKN 539
            GK+AYW+C  IEE ++    +  +    L E  + + + ++HGRM  ++KE+ M +FK 
Sbjct: 479 NGKQAYWVCTLIEESEKLQCIAATDTSKKLQEQLSFARVGLVHGRMKALEKEATMAAFKQ 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+LLY  P
Sbjct: 539 GEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSP 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RL ++++T DGFLI+E+DL+ R  GEILG +Q+G  +F IA  +   +L  I 
Sbjct: 599 LSQQGAERLKIMRSTTDGFLISEKDLELRGSGEILGTRQTGFRQFKIANLQRDKTLFTIL 658

Query: 660 RKDAKHIL 667
           R  AK ++
Sbjct: 659 RPIAKQLV 666


>gi|229521777|ref|ZP_04411195.1| ATP-dependent DNA helicase RecG [Vibrio cholerae TM 11079-80]
 gi|229341371|gb|EEO06375.1| ATP-dependent DNA helicase RecG [Vibrio cholerae TM 11079-80]
          Length = 692

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 263/675 (38%), Positives = 391/675 (57%), Gaps = 26/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + ++HP Y F     + DV  P +  VY    GL     + +  +AL+ L    + 
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L 
Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R Q ++++ +P+    ++ Q++L  +PF+PTK+Q+  + +I  D+ + + M+R++QGDV
Sbjct: 238 IRSQGQQDVALPLAPIHQLKQQLLAQLPFTPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +   
Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGK 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K     
Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++  
Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +
Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+
Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657

Query: 657 EIARKDAKHILTQDP 671
              +  A+HI  + P
Sbjct: 658 PQVQHIARHIHERYP 672


>gi|254225434|ref|ZP_04919045.1| ATP-dependent DNA helicase RecG [Vibrio cholerae V51]
 gi|125622068|gb|EAZ50391.1| ATP-dependent DNA helicase RecG [Vibrio cholerae V51]
          Length = 692

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 263/675 (38%), Positives = 391/675 (57%), Gaps = 26/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKIAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + ++HP Y F     + DV  P +  VY    GL     + +  +AL  L    + 
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALVLLEKSAVQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L 
Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQIRLIMEELLAQNLSMLA 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R Q ++++ +P+    ++ Q++L  +PF+PTK+Q+  + +I  D+ + + M+R++QGDV
Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFTPTKAQQRVVAEIEADLEKPHPMMRLVQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +   
Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIRVGWLAGKLKGK 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K     
Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++  
Sbjct: 418 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHA 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +
Sbjct: 478 CLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+
Sbjct: 538 FKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657

Query: 657 EIARKDAKHILTQDP 671
              ++ A+HI  + P
Sbjct: 658 PQVQRIARHIHERYP 672


>gi|78486490|ref|YP_392415.1| ATP-dependent DNA helicase RecG [Thiomicrospira crunogena XCL-2]
 gi|78364776|gb|ABB42741.1| ATP-dependent DNA helicase RecG [Thiomicrospira crunogena XCL-2]
          Length = 690

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 260/655 (39%), Positives = 378/655 (57%), Gaps = 35/655 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+T +GVG K    + K+   G  +     DLLF+ P  + D+      S++   +   I
Sbjct: 7   LTTLKGVGDK---LVEKLNRLGLFH---VQDLLFHLPLRYQDKTKLTPASQLLIGQEALI 60

Query: 73  TG-YISQHSSFQLQKRRPYKI--LLNDGTGEITLLFF---YRKTEMLKNVFFEGRKITVT 126
            G  I QH +   Q R    I  L++     I+  FF   YR+ +  K     G K+   
Sbjct: 61  EGEIIGQHMT---QSRNSSLIVKLVDPSNQPISCRFFHFHYRQAQQFKR----GLKLRAY 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP 183
           G+++   + + +VHP Y   N +    PL E    VY +  GL      K++ + L  L 
Sbjct: 114 GEVRSGPSGLEIVHPTYQLFNPESPP-PLEETLTPVYPVTEGLGQPTLLKLMQQTLQLLK 172

Query: 184 VLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQ 237
             P  E +   LL++   P I ++   +H P+   D      +  PA+ RL ++ELL  Q
Sbjct: 173 QYPLEEALPPSLLEELRLPPINQSLQTLHEPQPEDDLLQIKRFEHPAQRRLIFEELLTHQ 232

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           ++L L+R+  K+ I  P     + A ++L+N+PF  T +Q   + DI QD +Q + M R+
Sbjct: 233 LSLQLLRQHEKQRIA-PKVPASETASRLLKNLPFKLTGAQSRVLNDIQQDFNQPHPMQRL 291

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT++A +A     +AG Q  +MAP  ILA+QH     ++     I V  + G
Sbjct: 292 IQGDVGSGKTIIAALAALQVADAGYQVAVMAPTEILAEQHKNHFLEWLDPLDIPVAWLNG 351

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL--- 414
            M  A +R+AL++I  G+A +IIGTHALFQDS+ +  L LVI+DEQHRFGV QRL L   
Sbjct: 352 RMKAAEKREALQKIESGKAKVIIGTHALFQDSVTFDHLGLVIIDEQHRFGVHQRLALHDK 411

Query: 415 -TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
            TQ  + PH L+MTATPIPRTL +T+ GD+D+S I E P GR+PI+T ++   +  EV+E
Sbjct: 412 GTQNDSHPHQLIMTATPIPRTLAMTAYGDLDLSIIDELPPGRQPIETAVLNNTKRFEVME 471

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
            L+    +G +AYW+CP IEE +  + ++         +H+    + +IHGR+   +K  
Sbjct: 472 HLQAQCKQGVQAYWVCPLIEESELLHAQAAEVTAQQFMDHWPDLRVGLIHGRLKAEEKTE 531

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M +FKN    LL+ATTVIEVG++V +AS++IIENAE  GLAQLHQLRGRVGRG + S C
Sbjct: 532 RMRAFKNHELDLLVATTVIEVGVNVPNASLMIIENAERLGLAQLHQLRGRVGRGSKKSHC 591

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           +LLY  P+ + S  RL++++ + DGF IAEEDLK R  GEILG +Q+G   F IA
Sbjct: 592 VLLYQSPMGETSKARLNIMRESNDGFKIAEEDLKIRGPGEILGTRQTGGLHFRIA 646


>gi|157373470|ref|YP_001472070.1| ATP-dependent DNA helicase RecG [Shewanella sediminis HAW-EB3]
 gi|157315844|gb|ABV34942.1| ATP-dependent DNA helicase RecG [Shewanella sediminis HAW-EB3]
          Length = 691

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/679 (37%), Positives = 392/679 (57%), Gaps = 28/679 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV KK +  L+K+            DLLF+ P  + DR     I+ +     
Sbjct: 6   LVPVTELKGVAKKMAERLAKL------GIHTVQDLLFHLPLRYEDRTQIYPIASLYPGNY 59

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            TI   I Q S     ++R     + D TG +TL FF       KN    G  I   G+I
Sbjct: 60  GTIEAVI-QSSQIIQGRKRMLTCTVRDDTGSLTLRFFNFSVAQ-KNGLENGLTIRAYGEI 117

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           ++ K++  ++HP Y    + + + PL   +  VY    GL    + K+  +AL+   +L 
Sbjct: 118 RRGKHQAEIIHPEYKLVQT-NSDLPLSDTLTPVYPTTEGLKQASWIKLTEQALA---LLE 173

Query: 187 EWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIA 239
           E   ++L+  +  P   S+  A  ++H P    +     + T PA++RL  +ELLA  ++
Sbjct: 174 EGGLQELIPPELQPNNLSLKAALMLLHRPHNGVNLFELEQGTHPAQQRLIQEELLAHNLS 233

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +L +R++  ++  + +   G++    L+++PF PT +Q+    DI  D+ +   M+R++Q
Sbjct: 234 MLKLRQRSNRDKAVLMPASGQLLNPFLKSLPFKPTGAQQRVGADISTDLEKPFPMMRLVQ 293

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA +A   A+E G Q  +MAP  +LA+QH E   ++ +   + V  + G +
Sbjct: 294 GDVGSGKTIVAALAALQAIENGYQVAMMAPTELLAEQHAENFTQWFEPLGLKVGWLAGKL 353

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R ++L  I  G+A+++IGTHA+FQ+ + + KL L+I+DEQHRFGV QRL L +K  
Sbjct: 354 KGKARTQSLMDIESGEANMVIGTHAIFQEKVTFNKLALIIIDEQHRFGVHQRLGLREKGI 413

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           A    PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV +  +R +EVIER+
Sbjct: 414 AQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVATVAVSDSRRNEVIERV 473

Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +    ++G++AYW+C  IEE +    ++  +    L    T   + ++HGRM   +K+++
Sbjct: 474 RQAATNDGRQAYWVCTLIEESEVLECQAAEDTAEELRLMLTELKVGLVHGRMKSAEKQAI 533

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 534 MAEFKAGNLNLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 593

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+Y  PLS ++  RL VL+++ DGF+IA++DL+ R  GE+LG KQ+G+    IA      
Sbjct: 594 LMYKAPLSPSATKRLGVLRDSNDGFIIAQKDLEIRGPGEVLGTKQTGIADMKIADLIRDQ 653

Query: 654 SLLEIARKDAKHILTQDPD 672
           +L+   +K A H++ Q PD
Sbjct: 654 ALIPHIQKLAVHLMQQAPD 672


>gi|148976489|ref|ZP_01813185.1| ATP-dependent DNA helicase RecG [Vibrionales bacterium SWAT-3]
 gi|145964065|gb|EDK29322.1| ATP-dependent DNA helicase RecG [Vibrionales bacterium SWAT-3]
          Length = 692

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 265/682 (38%), Positives = 389/682 (57%), Gaps = 38/682 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L K+    N       DLLF+ P  + DR     I ++       
Sbjct: 9   PLNSLSGVGAKVAEKLEKV-GLNNVQ-----DLLFHLPLRYEDRTRIYPIIKLHAGIWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F EG+++   G+IK+
Sbjct: 63  VQGKVMSVDTI-FGKRKMLAVKISDGNGTITLRFF-NFTAGMKNNFAEGKQVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA----VYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
               + +VHP Y F   +    P +EA    VY    GL     + +  +AL       E
Sbjct: 121 GNMGLEIVHPDYKFFAPR--QQPDVEANLTPVYPTTEGLRQVTLRNLTDQAL-------E 171

Query: 188 WIEK----DLLQKKSFP---SIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAG 236
            I+K    +LL    +    ++A+A + IH P    D E       PA+ RL  +ELLA 
Sbjct: 172 LIDKAAVNELLPSGLYDHQITLAQALHTIHRPPPGIDLELFDEGKHPAQLRLIMEELLAQ 231

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            +++L +R + +++  + +     +  K+L  +PFSPT +Q    ++I  D+ + + M+R
Sbjct: 232 NLSMLSVRSKGQQDKAMSLPPMNTLKDKLLAQLPFSPTNAQARVTQEIETDLEKPHPMMR 291

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + 
Sbjct: 292 LVQGDVGSGKTLVAALAAVRALEHGQQVALMAPTELLAEQHAINFANWFEAMGIQVGWLA 351

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G +    R   L RIA G+A +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL+L +
Sbjct: 352 GKLKGKARETELARIASGEAQMMVGTHALFQEHVEFKNLGLVIIDEQHRFGVHQRLELRE 411

Query: 417 KATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           K       PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++
Sbjct: 412 KGAKQGYYPHQLVMTATPIPRTLAMTAYADLETSIIDELPPGRTPIQTVAIPDTKRDDIV 471

Query: 473 ERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
           ER++   L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K
Sbjct: 472 ERVRNACLNEGKQAYWVCTLIDESEVLEAQAAADTAEDLQRKLPDVKIGLVHGRMKPAEK 531

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           ++VM  FK     LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S
Sbjct: 532 QAVMQEFKENKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVAS 591

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+LLYH PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA   
Sbjct: 592 HCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLV 651

Query: 651 LHDSLLEIARKDAKHILTQDPD 672
               L+   ++ A+HI    PD
Sbjct: 652 RDQRLIPEVQRIARHIHDSYPD 673


>gi|238755589|ref|ZP_04616926.1| ATP-dependent DNA helicase recG [Yersinia ruckeri ATCC 29473]
 gi|238706189|gb|EEP98569.1| ATP-dependent DNA helicase recG [Yersinia ruckeri ATCC 29473]
          Length = 693

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 259/676 (38%), Positives = 391/676 (57%), Gaps = 26/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST  GVG   +  L+K+       ET   DLL + P  + DR    +I+++      T
Sbjct: 10  PLSTLSGVGASQAGKLAKM-----GLET-IQDLLLHLPLRYEDRTRLYRINDLLPGIFAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + S     +RR     ++DG+G +TL FF     M KN    G+ +   G+ K 
Sbjct: 64  VKGEVLR-SDISFGRRRMLTCQISDGSGILTLRFFNFNAAM-KNSLSPGKHVIAYGETKC 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
             +   ++HP Y  H  +++   L E+   VY    G+     +K+I +AL  L    + 
Sbjct: 122 GNHGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQATLRKLIDQALVLLDTSAIT 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242
           E +  +L   ++  S+ +A   +H P    +  D E    PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPTEL--SRTLISLPDAIRTLHRPPADIQLADLELGKHPAQRRLILEELLAHNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   +    +P+  E ++  + L N+PF+PT +Q+  + +I +D++ K  M+R++QGDV
Sbjct: 239 VRAGAQSYKALPLLAEEQLKPRFLANLPFAPTSAQKRVVAEIERDLTNKFPMMRLIQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V  + G     
Sbjct: 299 GSGKTVVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWFEPLGLEVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R    E IA G+  +++GTHA+FQD +Q+  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARIAQQEAIASGKVSMVVGTHAIFQDQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R +E+I R+K  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDSRRNEIIIRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L EG++AYW+C  IEE +    ++       L        + ++HGRM   +K+SVM S
Sbjct: 479 CLEEGRQAYWVCTLIEESELLEAQAAEATCEELKIALPEVRVGLVHGRMKAAEKQSVMQS 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++L
Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAML 658

Query: 657 EIARKDAKHILTQDPD 672
              ++ A+H+  Q PD
Sbjct: 659 PEVQRIARHLQQQYPD 674


>gi|94499884|ref|ZP_01306420.1| ATP-dependent DNA helicase RecG [Oceanobacter sp. RED65]
 gi|94428085|gb|EAT13059.1| ATP-dependent DNA helicase RecG [Oceanobacter sp. RED65]
          Length = 695

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 248/659 (37%), Positives = 379/659 (57%), Gaps = 22/659 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  + VG   +  L+K+   G  N     DL F+ P  + DR     I  +     V 
Sbjct: 12  PVTALKNVGPAMAEKLAKL---GIHN---VQDLAFHLPLRYQDRTRITPIGGLRANLDVV 65

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I + +     KRR   + + DGTG +TL FF+      KN   +G +I   G+ + 
Sbjct: 66  VEGDI-KAADVVFGKRRSLVVRIQDGTGTLTLRFFHFSAAQ-KNKLKKGERIRCFGEARP 123

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKII--VEALSRLPV-L 185
            K+ + + HP Y F +  + + P    +  +Y    GL+   +++++  V AL +  V +
Sbjct: 124 GKSGLELYHPEYQFMDELN-DTPTEQTLTPIYPSTEGLAQIRWRQLMSQVVALIKQGVGV 182

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALL 241
            + +  +LL  K+ PS+A+A   +H P    D +    +  PA+ RL  +ELLA  +++ 
Sbjct: 183 EDLLPAELLTSKNMPSLAQALLYLHQPPVGSDLDQMELYAHPAQHRLIIEELLAHNLSMQ 242

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            MR++ ++     I        K+L+ +PF+PT +Q+   ++I+ D ++   MLR++QGD
Sbjct: 243 KMREEMQRHAAPAIPASQDYLAKLLKQLPFTPTNAQQRVNQEIVADFAKGFPMLRLVQGD 302

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A    +E G Q  IMAP  ILA+QH +  + + +   I +  + G +  
Sbjct: 303 VGSGKTLVAAMAALHVLEQGYQVAIMAPTEILAEQHLKNFQGWMEPLGISMAWLAGKVKG 362

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R   L  I  G A +I+GTHALFQ+ +++  L L I+DEQHRFGV QRL L +K  + 
Sbjct: 363 KAREATLNAIKQGDAQLIVGTHALFQNDVEFKNLCLAIIDEQHRFGVHQRLALREKGKSI 422

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S I E P GR P+ TV+I  +R D+++ER++   
Sbjct: 423 NPHQLIMTATPIPRTLAMSAYADLDTSIIDELPPGRSPVNTVVIDQDRRDQIVERIRAAC 482

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            EG++AYW+C  IEE +E   ++      SL +      I ++HGR+   +K  +M +FK
Sbjct: 483 IEGRQAYWVCTLIEESEEMEAQAAEVTAQSLQDALPELKIGMVHGRLKAQEKADIMAAFK 542

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   LL+ATTVIEVG+DV +AS+++IEN E  GLAQLHQLRGRVGRG   S C+LLY  
Sbjct: 543 AGDLHLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGTAQSHCVLLYQT 602

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PLS+    RL  +++T DGF IAE DL+ R  GE+LG +Q+G+ +  IA  +    LL+
Sbjct: 603 PLSQQGKQRLHAMRDTSDGFKIAEIDLQIRGPGEVLGTRQTGLMQMRIADLQRDGYLLD 661


>gi|259906721|ref|YP_002647077.1| ATP-dependent DNA helicase RecG [Erwinia pyrifoliae Ep1/96]
 gi|224962343|emb|CAX53798.1| ATP-dependent DNA helicase RecG [Erwinia pyrifoliae Ep1/96]
 gi|283476504|emb|CAY72319.1| ATP-dependent DNA helicase RecG [Erwinia pyrifoliae DSM 12163]
          Length = 693

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 254/679 (37%), Positives = 375/679 (55%), Gaps = 32/679 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   +  L+K+            DLL + P  + DR     I+ +      T
Sbjct: 10  PLNTLSGVGASQATKLAKL------GLVTVQDLLLHLPLRYEDRTQLYAINNLLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  HS     +RR     + DGTG +TL FF     M KN    GR++T  G+IK+
Sbjct: 64  VEGEVL-HSDISFGRRRMLTCQIGDGTGTLTLRFFNFNAGM-KNSLAVGRRVTAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLP------ 183
            +    ++HP Y       V      +  VYS   G+     + +  +AL+ L       
Sbjct: 122 GQRGAEIIHPEYKVQGEHSVTGLQETLTPVYSTTEGVRQATLRNLTDQALTLLDTCAIAE 181

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIA 239
           +LP  +   L+      S+ +A   +H P      A     T PA+ RL  +ELLA  ++
Sbjct: 182 LLPPQLSGGLI------SLPDALRTLHRPPPDIALADLNSGTHPAQRRLIMEELLAHNLS 235

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +L +R   ++   +P++   +++ ++L  +PF PT +Q+  +++I  D++    M+R++Q
Sbjct: 236 MLAVRAGAQRYHALPMSPRHELSDRLLTALPFRPTAAQQRVVREIENDLAHDYPMMRLVQ 295

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +     +  G Q  +MAP  +LA+QH    +++     + V  + G  
Sbjct: 296 GDVGSGKTLVAALTALNVIAWGKQVALMAPTELLAEQHANNFRQWFAPLGLEVGWLAGKQ 355

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R    E IA GQ  +I+GTHA+FQ  +Q+  L LVI+DEQHRFGV QRL L +K  
Sbjct: 356 KGKARLAQQEAIASGQVSMIVGTHAIFQQQVQFNGLALVIIDEQHRFGVHQRLALWEKGE 415

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                 H L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I R+
Sbjct: 416 EQGFHSHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRADIITRV 475

Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           K    SEG++AYW+C  IEE +    ++    +  L       +I ++HGRM   +K++V
Sbjct: 476 KDACGSEGRQAYWVCTLIEESELLEAQAAQATWEELQLALPELTIGLVHGRMKPAEKQAV 535

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +FK G   LLIATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 536 MQAFKQGEIHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 595

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      
Sbjct: 596 LLYKSPLSKTAQKRLQVLRDSNDGFVIAQCDLEIRGPGELLGTRQTGNAEFRVADLLRDQ 655

Query: 654 SLLEIARKDAKHILTQDPD 672
           +L+   ++ A+HI    P+
Sbjct: 656 ALIPEVQRVARHIHQHYPE 674


>gi|123440445|ref|YP_001004439.1| ATP-dependent DNA helicase RecG [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087406|emb|CAL10187.1| ATP-dependent DNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 693

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 260/676 (38%), Positives = 392/676 (57%), Gaps = 26/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST  GVG   +  L+K+       ET   DLL + P  + DR    +I ++     VT
Sbjct: 10  PLSTLSGVGASQAGKLAKM-----GLET-IQDLLLHLPLRYEDRTRLYRIGDLLPGLSVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + S     +RR     ++DG+G +TL FF     M KN    G+ +   G+ K+
Sbjct: 64  VEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
                 ++HP Y  H  +++   L E+   VY    G+     +K+I +AL+ L   V+ 
Sbjct: 122 GNTGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQATLRKLIDQALAMLDSSVIA 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242
           E +  +L   +S  S+ EA +I+H P    +  D E    PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPIEL--SRSLISLPEAIHILHRPPADIQLADLEQGKHPAQRRLIMEELLAHNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   +    +P+  E ++ ++ L  +PF+PT +Q+  + +I QDM+    M+R++QGDV
Sbjct: 239 VRAGAQSYRALPLLPEEQLKRRFLAALPFTPTHAQQRVVAEIEQDMTHSYPMMRLIQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V  + G     
Sbjct: 299 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLEPLGLEVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R    E +A GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARLAQQEAVASGQVSMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  +VI+R+K  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L EG++AYW+C  IEE +    ++       L        + ++HGRM   +K++VM +
Sbjct: 479 CLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAVMLA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +++
Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMI 658

Query: 657 EIARKDAKHILTQDPD 672
              ++ A+H+  Q P+
Sbjct: 659 PEVQRVARHLHQQYPE 674


>gi|37520847|ref|NP_924224.1| ATP-dependent DNA helicase RecG [Gloeobacter violaceus PCC 7421]
 gi|35211842|dbj|BAC89219.1| DNA recombinase [Gloeobacter violaceus PCC 7421]
          Length = 811

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/680 (34%), Positives = 392/680 (57%), Gaps = 26/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++   G+G K +  L K+        T    +L Y+P  ++D   R  I       +VT
Sbjct: 120 PMTKLGGIGPKLAAQLEKL------GLTTIGQVLRYYPRDYLDYSNRTTIKVCQPGEMVT 173

Query: 72  ITGYISQHSSF---QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE--------G 120
           + G + +   F   +  K   + + L DGTG++ L  F+  T      + E        G
Sbjct: 174 LLGQVRRCRCFTSPRNHKLSIFTLTLGDGTGQMQLSQFFAGTRFTHRGWQEAQMKQYPRG 233

Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDV-NFPLIEAVYSLPTGLSVDLFKKIIVEA 178
             +  +G +K+    + +  P   +    +D+ N   I  VY+L  G+   + ++ +  A
Sbjct: 234 ATVAASGLVKRSTTGLTLQEPQLEVLDEGEDLQNLTKIVPVYALAEGVGAGVVRRAVKAA 293

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L       + +   +        +  A   +H P  A   E    AR RL +DE    Q+
Sbjct: 294 LPFANAFTDPLPAAVRTSLGLLDLPGAIRAVHYPESA---EHKLQARRRLVFDEFFFLQL 350

Query: 239 ALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            LL  R +Q ++  GI     G++ ++  + +PF+ T +Q+  ++++L D+     M R+
Sbjct: 351 GLLQRRHRQKRQSAGIAFRTRGELIEQFYKLLPFAFTGAQKRVVEEVLADLGSPEPMNRL 410

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA++AM  A+++G Q  +MAP  +LA+QHY+ + ++     + VE++TG
Sbjct: 411 IQGDVGSGKTVVAVVAMLTALQSGYQTALMAPTEVLAEQHYQKLVQWLSQLHLPVELVTG 470

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  A RR  L ++A G+ ++++GTHAL QD +Q+  L LV++DEQHRFGV QR +L  K
Sbjct: 471 SVRAARRRDVLRQLASGELNVVVGTHALIQDGVQFANLGLVVIDEQHRFGVGQRARLQNK 530

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P +L MTATPIPRTL LT  GD+D+S+I E P GRKP++T ++  +   +V E ++ 
Sbjct: 531 GRNPDLLTMTATPIPRTLALTLHGDLDVSQIDELPPGRKPVRTTVVTPSERTQVNELIRR 590

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMD 535
            + EG++AY + P IEE ++ + RS +E    L E   +   + ++HGR+   +KE+V+ 
Sbjct: 591 QILEGRQAYIVLPLIEESEKVDLRSAIEEHERLKEKIFAEFRLGLLHGRLKSEEKEAVIG 650

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +F+     LL++TTV+EVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG   S C+L+
Sbjct: 651 AFRRHELDLLVSTTVVEVGVDVPNATVMLIEHAERFGLAQLHQLRGRVGRGANQSFCLLM 710

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
                ++++  RL VL+ + DGFLIAE DL+ R  GE++G +QSG+P  +++        
Sbjct: 711 SATK-TESALQRLRVLEQSNDGFLIAEMDLRLRGPGEVMGTRQSGLPDMVLSSLVEDQDS 769

Query: 656 LEIARKDAKHILTQDPDLTS 675
           LE+AR++A+ ++ +DP+LT+
Sbjct: 770 LELARREAQSLIERDPELTA 789


>gi|219871623|ref|YP_002475998.1| ATP-dependent DNA helicase RecG [Haemophilus parasuis SH0165]
 gi|219691827|gb|ACL33050.1| ATP-dependent DNA helicase [Haemophilus parasuis SH0165]
          Length = 693

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 262/677 (38%), Positives = 383/677 (56%), Gaps = 28/677 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   S  LS+I    N       DLLF+ P  + DR     I+++  E   T
Sbjct: 10  PLTALSGVGAAISEKLSRI-GINNVQ-----DLLFHLPLRYEDRTRITPIADVRPESFAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G++ Q +  Q  +R      ++DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  VEGFV-QLTEVQFGRRPILSTTISDGTSKITLKFFNFNAGM-KNSLATGVRVKTFGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y I   +Q +     +  +Y    GL     +K+  +AL+ L    E +
Sbjct: 122 GRFMAEIHHPEYQIIRGNQPLELAETLTPIYPTTEGLKQASLRKLTDQALALL----ERV 177

Query: 190 E-KDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALL 241
           +  +LL  +  P   S+ EA  ++H P  +   E       PA++RL ++ELLA  +A+ 
Sbjct: 178 QVAELLPDEFNPHKYSLKEALQLLHRPPPSVSSELLDKGEHPAQKRLIFEELLAHNLAMQ 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P+  +  + Q+ L  +PF PT +Q     +I QD+++   M+R++QGD
Sbjct: 238 QVRMGVQQHFAEPLCYQTDLKQRFLATLPFQPTNAQSRVTAEIEQDLAKPFPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +  
Sbjct: 298 VGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHAHNFANWLRPFGIEVGWLAGKVKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R   LE I +G   +IIGTHALFQD ++++ L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARTAQLEAIKNGDVQMIIGTHALFQDQVEFHHLALVIIDEQHRFGVHQRLTLREKGAKG 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-K 476
              PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DEV+ R+ +
Sbjct: 418 DVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEVVRRVYQ 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+++M 
Sbjct: 478 ACKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQHALPDLRIGLVHGRMKPQEKQAIMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+L+
Sbjct: 538 EFKAADIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLM 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PL K S  RL VL++++DGF+IAE+DL+ R  GE+LG KQ+GM +F IA       +
Sbjct: 598 YKAPLGKISSKRLQVLRDSQDGFVIAEKDLEIRGPGEVLGTKQTGMAEFKIANLMRDRKM 657

Query: 656 LEIARKDAKHILTQDPD 672
           + + +  AK +  + PD
Sbjct: 658 IPLVQSYAKQLTLKYPD 674


>gi|304311594|ref|YP_003811192.1| RecG-like helicases [gamma proteobacterium HdN1]
 gi|301797327|emb|CBL45547.1| RecG-like helicases [gamma proteobacterium HdN1]
          Length = 698

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 253/679 (37%), Positives = 382/679 (56%), Gaps = 25/679 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P+   +GVG   ++ L+++      +     DLLF+ P  + DR     I+ +   +
Sbjct: 11  LRSPVQYLKGVGPTLAVLLTRL------HIHTVQDLLFHLPFRYQDRTQLTPIATLEGSQ 64

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              I G +       + +RR   + + DG+G + +  F+      K  F +G+ +   G+
Sbjct: 65  EALIQGEVLS-CDIHMGRRRTLAVRITDGSGTLLIRMFHFSATQQKQ-FAKGQWLRCYGE 122

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPVL 185
            +   +   MVHP Y   +  D   PL E+   +Y L  G+S     K+  EAL+RL   
Sbjct: 123 ARVTASGREMVHPEYRLID--DPEQPLTESLTPIYPLTEGISQARLLKLTEEALTRLDAH 180

Query: 186 PEWIE---KDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQI 238
            E +E   + L Q +  PS+A+A + +H P    +       + PA++RLA +E+LA  +
Sbjct: 181 REALELVPEALFQARKLPSLADALHYVHRPPTDANVYQLLNGSHPAQQRLALEEMLAHHL 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +L  +R   +     P+    ++ + +L+ +PF+PT +Q     +I  D+ Q   MLR++
Sbjct: 241 SLRKLRATIRHHPAPPMPASRELIRGLLQRLPFAPTGAQNRVFAEIEADLQQPAPMLRLV 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A+EAG Q  +MAP  ILA+QHY+   ++ +   +    +TG 
Sbjct: 301 QGDVGSGKTLVAALAALQAIEAGYQVALMAPTEILAEQHYQNFCEWFEPLGLHTHWLTGK 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    +R  LE    G  H++ GTHALFQD + Y +L LVI+DEQHRFGV QRL L QK 
Sbjct: 361 LSARQKRLVLEDTRTGHTHLLAGTHALFQDDVHYARLGLVIIDEQHRFGVHQRLALKQKG 420

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                 PH L+MTATPIPRTL +++  D+D S I E P GR PI TV +  +R DE+I+R
Sbjct: 421 AVNGILPHQLIMTATPIPRTLAMSAYADLDTSIIDELPPGRTPITTVAVDASRRDEIIQR 480

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +      G++AYW+C  IEE +    ++  +    L        I +IHGRM   +K  V
Sbjct: 481 VYQNCKTGRQAYWVCTLIEESETLQCQAAEDTTEYLRAALPDLQIGLIHGRMKAREKSQV 540

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M++F+    +LL+ATTVIEVG++V +AS++IIEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 541 MEAFQQNAIQLLVATTVIEVGVNVPNASLMIIENPERLGLAQLHQLRGRVGRGAAQSFCV 600

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLS+    R+ +++ + DGF+IA+ DL+ R  GE+LG +Q+G   F +A      
Sbjct: 601 LLYQKPLSRAGRERIEIMRESHDGFVIAQRDLELRGPGEVLGTRQTGDLNFKVADLLRDQ 660

Query: 654 SLLEIARKDAKHILTQDPD 672
            LL+  +  A H+L+  PD
Sbjct: 661 DLLDDCKALADHVLSHHPD 679


>gi|260770798|ref|ZP_05879727.1| ATP-dependent DNA helicase RecG [Vibrio furnissii CIP 102972]
 gi|260614035|gb|EEX39225.1| ATP-dependent DNA helicase RecG [Vibrio furnissii CIP 102972]
 gi|315178840|gb|ADT85754.1| ATP-dependent DNA helicase RecG [Vibrio furnissii NCTC 11218]
          Length = 703

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 264/686 (38%), Positives = 407/686 (59%), Gaps = 30/686 (4%)

Query: 5   FLNPLFA--PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           F++ L +  PLS+  GVG K +  L KI      N  +  DLLF+ P  + DR     I 
Sbjct: 11  FMSQLLSAIPLSSLSGVGAKVAEKLEKI----GLNSVQ--DLLFHLPLRYEDRTRVYPII 64

Query: 63  EISEERIVTITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           ++       + G + +  ++F   +R+   + ++DG G +TL FF   T  +KN F +G+
Sbjct: 65  KLHPGLWAAVQGKVMAVDTTFG--RRKMLTVKISDGNGTLTLRFF-NFTAGMKNNFADGK 121

Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEAL 179
            +   G+IK+    + ++HP Y  F  +Q+ +  P +  VY    GL     + +  +AL
Sbjct: 122 LVHAYGEIKRGNGGLEIIHPDYKFFAPAQNPDVEPNLTPVYPTTDGLRQLTLRNLTDQAL 181

Query: 180 SRLPVLPEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDE 232
           +   +L +   ++LL    +    ++A+A + IH P    D     E   PA+ RL  +E
Sbjct: 182 A---LLDKAAVQELLPSGLYDHQITLAQALHTIHRPPADIDLSLFDEGRHPAQIRLIMEE 238

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R + ++++ +P+    ++ Q++L  +PFSPT++Q   +++I  D+++ +
Sbjct: 239 LLAQNLSMLAVRSKGQQDVALPLPETHQLKQQLLAQLPFSPTQAQARVVREIEADLAKPH 298

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V
Sbjct: 299 PMMRLVQGDVGSGKTLVAALAAVRALEHGYQVALMAPTELLAEQHALNFANWFERMGIPV 358

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    +   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL
Sbjct: 359 GWLAGKLKGKAKEAELARIASGEVKMVVGTHALFQEHVVFDHLSLVIIDEQHRFGVHQRL 418

Query: 413 KLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           +L +K       PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + 
Sbjct: 419 ELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSIIDELPPGRTPIQTVAIPDTKR 478

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++IER++   L+EGK+AYW+C  I+E +    ++  +    L       +I ++HGRM 
Sbjct: 479 ADIIERVRHACLTEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDLNIGLVHGRMK 538

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK+    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 539 PAEKQAVMQAFKDNQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 598

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLYH PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F I
Sbjct: 599 SVASHCVLLYHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKI 658

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A       L+   ++ A+HI  Q PD
Sbjct: 659 ADLVRDQRLIPEVQRIARHIHEQYPD 684


>gi|218438140|ref|YP_002376469.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 7424]
 gi|218170868|gb|ACK69601.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 7424]
          Length = 818

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/680 (36%), Positives = 394/680 (57%), Gaps = 33/680 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS    VG + S  L+++            D+LFY+P   ID   +  I+ +     VT
Sbjct: 124 PLSALVEVGYRKSDLLARL------GLKTVQDILFYYPRDHIDYARQVSITNLVAGETVT 177

Query: 72  ITGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKT--------EMLKNVFFEG 120
           I G + + + F   K +    +++L+ D TG+I L  F+  T        E  K ++  G
Sbjct: 178 IVGTVKRCNCFTSPKNKQLSIFELLIKDSTGQIKLNRFFAGTRFTNRGWQERQKRLYPVG 237

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFKKII 175
             +  +G +K+ K    + +P     +S     + +    +  VY L  G+  DL +K +
Sbjct: 238 SVVAASGLVKQNKYGFTLENPEIEVLDSLGSHIESLKIGRVLPVYPLTEGVPADLVRKAV 297

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           +EAL  L  L + +  DL  +     + EA   IH P      +  + AR RL +DE   
Sbjct: 298 IEALGALHQLKDPLPVDLRNEYGLIKLKEAIANIHFPENP---DILTHARRRLVFDEFFF 354

Query: 236 GQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
            Q+  L  R++ K+ +     N  G+  +K    +PF  T +QE  I +IL+D+     M
Sbjct: 355 LQLGFLQRRQEQKQTQKSASFNPRGEFIEKFNHLLPFPLTNAQERVIGEILEDLKSFTPM 414

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++QGDVGSGKT+V + A+ AA+++G QA +MAP  +LA+QHY  +  +     + VE+
Sbjct: 415 NRLVQGDVGSGKTIVGVFAILAAIQSGYQAALMAPTEVLAEQHYRKLVGWFNLLHLPVEL 474

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+   A RR+   ++ +G+  +++GTHAL QD + +  L LV++DEQHRFGVQQR +L
Sbjct: 475 LTGSTKVAKRREIHSQLENGELPLLVGTHALIQDPVNFRNLGLVVIDEQHRFGVQQRARL 534

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K  APHVL MTATPIPRTL LT  GD+D+S+I E P GR+PI+T ++      +  E 
Sbjct: 535 LAKGQAPHVLTMTATPIPRTLALTIHGDLDVSQIDELPPGRQPIQTTVLTGKERTQAYEL 594

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKES 532
           ++  +++G++AY I P IEE ++ + R+ VE +  L E       I ++HGRMS I+K+ 
Sbjct: 595 IRREVAQGRQAYVIFPLIEESEKLDVRAAVEDYKRLSETIFPDFQIGLLHGRMSSIEKDE 654

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           V+++F++   +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   S C
Sbjct: 655 VLNAFRDNQTQIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGSHKSYC 714

Query: 593 ILLYHPPLSKN--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
           +L+     S+N  S  RL VL+ ++DGF I+E DL+ R  GE+LG +Q+G+P F +A   
Sbjct: 715 LLMSS---SRNPESNQRLKVLEQSQDGFFISEMDLRFRGPGEVLGTRQTGLPDFALASLV 771

Query: 651 LHDSLLEIARKDAKHILTQD 670
               +L +AR+ A+ ++  D
Sbjct: 772 EDQEVLTVAREAAEKVMMAD 791


>gi|332288967|ref|YP_004419819.1| ATP-dependent DNA helicase RecG [Gallibacterium anatis UMN179]
 gi|330431863|gb|AEC16922.1| ATP-dependent DNA helicase RecG [Gallibacterium anatis UMN179]
          Length = 694

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/671 (38%), Positives = 386/671 (57%), Gaps = 26/671 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   S  LS++            DLLF+ P  + DR +   I ++  +   T
Sbjct: 11  PLTVLSGVGVAMSERLSRL------GIRSVQDLLFHFPLRYEDRTHITPIIDLRPDSYAT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q    Q  +R    + L+DG+ +I L FF     M KN F  G ++   G+I++
Sbjct: 65  IEG-IVQTCEVQFGRRPMLTVSLSDGSSKIMLRFFNFNAGM-KNSFSSGARVKAFGEIRR 122

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    M HP Y  I HN        +  +Y    GL    ++K+  +AL+   +L +  
Sbjct: 123 GRFMAEMHHPEYRIIHHNEPLTLDENLTPIYPSTEGLKQASWRKLTDQALA---LLDKAT 179

Query: 190 EKDLLQKKSFPS---IAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
            K+LL  +  PS   +  A   +H P      E       PA++RLA++ELLA  +A+  
Sbjct: 180 IKELLPTEFNPSGYDLKSAVQFLHRPPAGTLSEMLEKGEHPAQQRLAFEELLAHNLAMQK 239

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            ++  ++   I +  +  I Q+ L  +PF+PTK+Q   +++I QD+ +   M+R++QGDV
Sbjct: 240 SKQDAQQNSAIALRYQSNIKQQFLATLPFTPTKAQLRVVEEIEQDLQRSQPMMRLIQGDV 299

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVAL+A   A++   Q  IMAP  ILA+QH      + +   I V  + G +   
Sbjct: 300 GSGKTLVALLASLVALDNQQQVAIMAPTEILAEQHLHNFSHWLEPFGIKVGWLAGKVKGK 359

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+++L +I  G+  ++IGTHALFQ+ ++++ L LVI+DEQHRFGV+QRL L +K     
Sbjct: 360 KRQQSLAQIQCGETQVVIGTHALFQEQVEFHSLALVIIDEQHRFGVEQRLLLREKGAKNG 419

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KV 477
             PH L+MTATPIPRTL +T   D+D+S I E P GR PIKTV I  +R DE+++R+   
Sbjct: 420 LYPHQLIMTATPIPRTLAMTVYADLDVSVIDELPPGRTPIKTVAIAEDRRDELVQRVFHA 479

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
              + ++ YW+C  I+E +    ++       L +      I ++HGRM   +K+ VM  
Sbjct: 480 CTVDKRQVYWVCTLIDESEVLEAQAAEALAEDLRKALPMLKIGLVHGRMKPQEKQDVMAI 539

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G   +L+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG+  S C+LLY
Sbjct: 540 FKAGEIDVLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGQIESFCVLLY 599

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PL K S  RL +++++ DGF+IAE+DL+ R  GE+LG+KQ+G+ +F +A    +  LL
Sbjct: 600 KAPLGKISRQRLDIMRSSNDGFVIAEKDLEIRGPGEVLGVKQTGVAEFKVANLVRNRRLL 659

Query: 657 EIARKDAKHIL 667
              ++ A  ++
Sbjct: 660 PAVQRCANQLM 670


>gi|297537284|ref|YP_003673053.1| ATP-dependent DNA helicase RecG [Methylotenera sp. 301]
 gi|297256631|gb|ADI28476.1| ATP-dependent DNA helicase RecG [Methylotenera sp. 301]
          Length = 679

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/660 (37%), Positives = 379/660 (57%), Gaps = 17/660 (2%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
           K +S  L   +N  + N T+   LL + P  +ID  +   + ++       + G I  H+
Sbjct: 8   KTFSKPLVANLNKLDVNTTQA--LLLHLPLRYIDETHMTSVRDLRVGEPSQVEGEIV-HA 64

Query: 81  SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
               + R+     L D +G++TL F +     +  +   G K+ V G+++       MVH
Sbjct: 65  EVTYKPRKALIARLEDASGQLTLRFLHFYPSQISALKV-GNKLRVYGEVRSGFFGNEMVH 123

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200
           P       + +    +  VY    GL+    +K I  AL +  VL E +   + Q+  FP
Sbjct: 124 PTCKAVGEKTMVAETLTPVYPTVAGLTQVNLRKAIATALKQ-NVLNETLPVSVYQQYQFP 182

Query: 201 SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQF--KKEIGIP 254
           S + +   +HNP    D     E T+P  +RLA+DELLA Q++   MRK +  ++ +  P
Sbjct: 183 SFSASLKALHNPPPDADLQGLEEKTTPEWQRLAFDELLAQQLS---MRKHYARRRSVDAP 239

Query: 255 INVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
              + K +   +L+++PF+ T++Q+    +I  D++Q + M R+LQGDVGSGKT+VA +A
Sbjct: 240 QFKQSKQLVSALLKSLPFALTQAQQKVAVEIQNDLTQPHPMQRLLQGDVGSGKTIVACMA 299

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
              ++E+G Q  +MAP  ILA+QH+  +  +     I +   TG+  +  R  A++ IA 
Sbjct: 300 ALQSIESGWQVALMAPTEILAEQHFRKMIGWLTPLNIKIAWHTGSQSKKDREAAMQIIAD 359

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIP 432
           G A ++IGTHALFQ+++Q+ KL L I+DEQHRFGV QRL L QK    PH L+MTATPIP
Sbjct: 360 GSAQLVIGTHALFQEAVQFKKLGLAIIDEQHRFGVHQRLALRQKGQPEPHQLMMTATPIP 419

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++   D+D+S I E P GR PI T ++   R DE+++R++   ++G +AYW+CP I
Sbjct: 420 RTLSMSYYADLDVSVIDELPPGRTPIVTKLVSDVRRDEILQRVREACAQGNQAYWVCPLI 479

Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           EE +     +  + +  +   F    I ++HGRM   +K++VM +F  G  +LL+ATTVI
Sbjct: 480 EESEALQLATANDTYALMQSEFPELKIGLVHGRMKPAEKQAVMAAFSAGETQLLVATTVI 539

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           EVG+DV +AS+++IE+AE  GL+QLHQLRGRVGRG   S+CILLY   LS+ +  RL V+
Sbjct: 540 EVGVDVPNASLMVIEHAERMGLSQLHQLRGRVGRGAAKSTCILLYQNKLSETARARLKVI 599

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
             + DGF IA+ DL  R  GE LG +QSG+P   IA       LL  A+  A  ++ + P
Sbjct: 600 YESNDGFAIAQADLNLRGPGEYLGTRQSGVPMLKIADLNRDADLLNAAKNMADRLIKEHP 659


>gi|330827858|ref|YP_004390810.1| ATP-dependent DNA helicase RecG [Aeromonas veronii B565]
 gi|328802994|gb|AEB48193.1| ATP-dependent DNA helicase RecG [Aeromonas veronii B565]
          Length = 689

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 257/674 (38%), Positives = 381/674 (56%), Gaps = 25/674 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL + +GVG K      K+   G A      DLLF+ P  + DR     I ++       
Sbjct: 7   PLDSLKGVGSKMQ---EKLERLGLAT---VQDLLFHLPLRYEDRTQVWPIGDLPPGLHGA 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I Q +   + +RR     ++DGTG +TL FF   T   KN    GR I   G+++ 
Sbjct: 61  VEGEI-QDTQLVMGRRRMMVCRISDGTGTLTLRFF-NFTAAQKNSLAAGRLIRCFGEVRP 118

Query: 132 LKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            K  + M HP Y     +        +  VY    GL     + +  +AL++L +   + 
Sbjct: 119 GKYGLEMAHPEYKLLGEEQAGQTEEALTPVYPTTEGLRQLTLRNLTDQALAQLDL---YG 175

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
            ++LL    +P    +A A  ++H P  +           PA++RL  +ELLA  +++L 
Sbjct: 176 VEELLPAGLYPHQIELAAALKLLHRPPPSVALPLLESGQHPAQQRLVLEELLAHNLSVLK 235

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R Q + ++   +    ++ +++L  +PF PT +Q   + +I +D+ Q + M+R++QGDV
Sbjct: 236 VRAQAQTQLARALKPAPELVEQLLGALPFKPTGAQSRVVTEISKDLQQSHPMMRLVQGDV 295

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+  G Q  +MAP  +LA+QH     K+ +   I V  + G     
Sbjct: 296 GSGKTLVAALAALQAIGNGCQVGLMAPTELLAEQHAINFAKWLEPLGIGVGWLAGKQKGK 355

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---- 418
            R ++L  I  G   +++GTHA+FQ+ + + +L LVI+DEQHRFGV QRL L +K     
Sbjct: 356 AREESLAAIKDGSVKMVVGTHAIFQEQVVFQRLALVIIDEQHRFGVHQRLALREKGEREG 415

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T+  D+D S I E P GR PI TV +P +R  +VIER+K+ 
Sbjct: 416 VHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPITTVALPDSRRGDVIERVKLA 475

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EGK+AYW+C  IEE +    ++  +    L        I ++HGRM  ++K+ VM+ F
Sbjct: 476 CTEGKQAYWVCTLIEESEVLECQAAEDTAAELQNLLPGLHIGLVHGRMRPVEKQRVMEEF 535

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 536 KAGILQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYH 595

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK + +RL VL+ T DGFLIA+ DL+ R  GE+LG +Q+G+    IA       L+ 
Sbjct: 596 APLSKTAQSRLGVLRETNDGFLIAQRDLELRGPGELLGTRQTGLADLKIADLVRDQPLIP 655

Query: 658 IARKDAKHILTQDP 671
             +K A+ ++ + P
Sbjct: 656 QVQKMARFLMDRHP 669


>gi|238784019|ref|ZP_04628035.1| ATP-dependent DNA helicase recG [Yersinia bercovieri ATCC 43970]
 gi|238715127|gb|EEQ07123.1| ATP-dependent DNA helicase recG [Yersinia bercovieri ATCC 43970]
          Length = 693

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 390/676 (57%), Gaps = 26/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST  GVG   +  L+K+       ET   DLL + P  + DR    +I ++     VT
Sbjct: 10  PLSTLSGVGASQAGKLAKM-----GLET-IQDLLLHLPLRYEDRTQLYRIGDLQPGLSVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + S     +RR     ++DG+G +TL FF     M KN    G+ +   G+ K+
Sbjct: 64  VEGEVLR-SDITFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
             +   ++HP Y  H  +++   L E+   VY    G+     +K+I +AL+ L   V+ 
Sbjct: 122 GNSGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQATLRKLIDQALAMLDTCVIA 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLL 242
           E +  +L   +S  S+ EA + +H P    +  D E    PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPIEL--SRSLLSLPEAIHTLHRPPADIQLADLEKGKHPAQRRLIMEELLAHNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   +    +P+  E ++ Q+ L  +PF+PT++Q+  + +I QDM     M+R++QGDV
Sbjct: 239 VRAGAQSYRALPLLAEDQLKQRFLAALPFTPTRAQQRVVAEIEQDMMHNFPMMRLIQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V  + G     
Sbjct: 299 GSGKTVVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLEPLGLEVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R      +A GQ  +++GTHA+FQ+ +++  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARLAQQAAVASGQVSMVVGTHAMFQEQVKFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  +VI R+K  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVISRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L EG++AYW+C  IEE +    ++       L        + ++HGRM   +K++VM +
Sbjct: 479 CLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAVMLA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +++
Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMI 658

Query: 657 EIARKDAKHILTQDPD 672
              ++ A+H+  Q P+
Sbjct: 659 PEVQRIARHLHQQYPE 674


>gi|238759851|ref|ZP_04621007.1| ATP-dependent DNA helicase recG [Yersinia aldovae ATCC 35236]
 gi|238701912|gb|EEP94473.1| ATP-dependent DNA helicase recG [Yersinia aldovae ATCC 35236]
          Length = 693

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 390/676 (57%), Gaps = 26/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST  GVG   +  L+K+       ET   DLL + P  + DR    +I ++     VT
Sbjct: 10  PLSTLSGVGASQAGKLAKM-----GLET-IQDLLLHLPLRYEDRTRLYRIGDLMPGLSVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + S     +RR     ++DG+G +TL FF     M KN    G+ +   G+ K+
Sbjct: 64  VEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
                 ++HP Y  H  +++   L E+   +Y    G+     +K+I +AL+ L   V+ 
Sbjct: 122 GNTGPEIIHPEYRVHG-ENIGVELQESLTPIYPTTEGIRQATLRKLIDQALAMLDTSVIA 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242
           E +  +L   +S  S+ EA + +H P    +  D E    PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPIEL--SRSLISLPEAIHTLHRPPADIQLADLEQGKHPAQRRLIMEELLAHNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   +    +P+  E ++ Q+ L  +PF+PT +Q   + +I QDM+    M+R++QGDV
Sbjct: 239 VRAGAQSYRALPLLAEEQLKQRFLAALPFTPTGAQRRVVAEIEQDMTHNFPMMRLIQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V  + G     
Sbjct: 299 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHAATFRQWLEPLGLEVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R    E +A GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARIAQQEAVASGQVSMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  +V++R+K  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVVQRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L EG++AYW+C  IEE +    ++       L        + ++HGRM   +K++VM +
Sbjct: 479 CLEEGRQAYWVCTLIEESELLEVQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAVMLA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +++
Sbjct: 599 KTPLSKTAQRRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMI 658

Query: 657 EIARKDAKHILTQDPD 672
              ++ A+H+  Q P+
Sbjct: 659 PEVQRVARHLHQQYPE 674


>gi|317050129|ref|YP_004117777.1| ATP-dependent DNA helicase RecG [Pantoea sp. At-9b]
 gi|316951746|gb|ADU71221.1| ATP-dependent DNA helicase RecG [Pantoea sp. At-9b]
          Length = 703

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 248/669 (37%), Positives = 377/669 (56%), Gaps = 25/669 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST  GVG   +  L+KI            DLL + P  + DR    +I+++      T
Sbjct: 21  PLSTLTGVGASQAAKLAKI------GLYTIQDLLLHLPLRYEDRTQLYRINDLLPGIWAT 74

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +   S     +RR     ++DG+G +T+ FF     M KN    GR++T  G+IK+
Sbjct: 75  VEGEVLS-SEITFGRRRMLVCQISDGSGVLTMRFFNFNAGM-KNSLATGRRVTAYGEIKR 132

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
            +    ++HP Y        N  L E    VY    G+     + +  +AL+ L    + 
Sbjct: 133 GQRGAEIIHPEYRIQGEHS-NVELQETLTPVYPTTEGIRQATLRNLTDQALTLLETCAIA 191

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLL 242
           E +  +L       S+ +A   +H P    R ++      PA+ RL  +ELLA  +++L 
Sbjct: 192 ELLPPEL--SGGLISLPDALRTLHRPPPDLRLSELETGRHPAQRRLIMEELLAHNLSMLA 249

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   +P+    ++  ++L  +PFSPT +Q+  + +I +D++    M+R++QGDV
Sbjct: 250 VRAGAQRHHALPMPANHQLVDQLLAALPFSPTGAQQRVVAEIERDLAHDFPMMRLVQGDV 309

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A    +  G Q  +MAP  +LA+QH    +++     I V  + G     
Sbjct: 310 GSGKTLVAAMAALNVIAYGKQVALMAPTELLAEQHANNFRQWFAPLGIEVGWLAGKQKGK 369

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+   E IA GQ  +++GTHALFQ+ +Q+  + LVI+DEQHRFGV QRL L +K     
Sbjct: 370 ARQAQQEAIASGQVAMVVGTHALFQEQVQFNGMALVIIDEQHRFGVHQRLALWEKGEEQG 429

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R  ++I R++  
Sbjct: 430 FHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDSRRSDIITRVQSA 489

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             EG++AYW+C  IEE +    ++    +  L        + ++HGRM   +K++VM +F
Sbjct: 490 CHEGRQAYWVCTLIEESELLEAQAAEATWQELKVALPDLQVGLVHGRMKPAEKQAVMQAF 549

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K    +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 550 KANEIQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIASHCVLLYK 609

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +++ 
Sbjct: 610 APLSKTAQKRLQVLRDSNDGFVIAQHDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIP 669

Query: 658 IARKDAKHI 666
             ++ A+HI
Sbjct: 670 EVQRVARHI 678


>gi|238794542|ref|ZP_04638150.1| ATP-dependent DNA helicase recG [Yersinia intermedia ATCC 29909]
 gi|238726122|gb|EEQ17668.1| ATP-dependent DNA helicase recG [Yersinia intermedia ATCC 29909]
          Length = 693

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 259/676 (38%), Positives = 390/676 (57%), Gaps = 26/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST  GVG   +  L+K+       ET   DLL + P  + DR    +I ++     VT
Sbjct: 10  PLSTLSGVGASQAGKLAKM-----GLET-IQDLLLHLPLRYEDRTRLYRIGDLMPGLSVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + S     +RR     ++DG+G +TL FF     M KN    G+ +   G+ K+
Sbjct: 64  VEGEVLR-SDITFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
                 ++HP Y  H  +++   L   +  VY    G+     +K+I +AL+ L   V+ 
Sbjct: 122 GNTGPEIIHPEYRVHG-ENIGVELQASLTPVYPTTEGIRQATLRKLIDQALAMLDTCVIA 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242
           E +  +L   +S  S+ EA + +H P    +  D E    PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPIEL--SRSLISLPEAIHTLHRPPADIQLADLEQGKHPAQRRLIMEELLAHNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   +    +P+  E ++ Q+ L  +PF+PT +Q+  + +I QDM+    M+R++QGDV
Sbjct: 239 VRAGAQSYRALPLLAEQQLKQRFLAALPFTPTHAQQRVVAEIEQDMAHNFPMMRLIQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V  + G     
Sbjct: 299 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHATTFRQWLEPLGLQVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R    E +A GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARIAQQEAVASGQVAMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  +VI+R+K  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L EG++AYW+C  IEE +    ++       L        + ++HGRM   +K++VM +
Sbjct: 479 CLEEGRQAYWVCTLIEESEVLEAQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAVMLA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +++
Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMI 658

Query: 657 EIARKDAKHILTQDPD 672
              ++ A+H+  Q P+
Sbjct: 659 PEVQRVARHLHQQYPE 674


>gi|326576486|gb|EGE26394.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis CO72]
          Length = 698

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/676 (37%), Positives = 377/676 (55%), Gaps = 50/676 (7%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++   GVG+  +  L+++         R  D+L + P  + DR     I ++S    V 
Sbjct: 11  PVTALSGVGQALAGRLAEL------GIHRIFDMLLHLPRDYEDRSRVIAIKDVSHGMSVL 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G ++    +  + R    + L D TGEITL FF+    +L  +   G KITV G+IK 
Sbjct: 65  VAGVVT----WVEKNRTGLSVTLEDATGEITLRFFHTYPSLLTTMMV-GAKITVFGEIKV 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
            +    M HP Y    ++     L+  +Y    G++ +  ++++  AL+        +++
Sbjct: 120 SRYGTQMSHPDYHLTGTKKFESGLLP-IYPTIKGINQNKLRQLVRLALTA-------VQQ 171

Query: 192 DLLQKKS-----------FPSIAEAFNIIHNPRKAKDF-----------EWTSPARERLA 229
           D +   S              +  A   +H P    D            + T PA  R+ 
Sbjct: 172 DGIHGLSETQLKAAGVELTGDLLPALKAVHLPEIHADIFSQTALLAGLKDRTHPACRRII 231

Query: 230 YDELLAGQIALLLMRK---QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286
            +EL+A Q++ L  R    Q+K     PI+    +A++++  +PF  T +Q+  I + + 
Sbjct: 232 IEELVAHQVSFLFRRNHIYQYKAPKCDPIS---PLAKQLVAGLPFELTAAQKRVIDEAVS 288

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           DM+    MLR++QGDVG+GKTLVA +    A+++G Q  +MAP  ILA+QH    +K+ +
Sbjct: 289 DMATSRPMLRLIQGDVGAGKTLVAAMTACYALDSGWQVAVMAPTEILAEQHLINFQKWFE 348

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              I V  + G      R  AL+ I   Q  I++GTHALF D++ + KL LVI+DEQHRF
Sbjct: 349 PLGIGVGWLAGKQTAKERTAALDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQHRF 408

Query: 407 GVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           GV+QRL+LT K     APH L MTATPIPRTL ++  GD+D+S I E P  R PI TV I
Sbjct: 409 GVEQRLRLTNKGVLGGAPHQLAMTATPIPRTLAMSMYGDMDVSIIDELPPKRTPITTVTI 468

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             +R DEVIER++     GK+AYW+CP +EE    + +S    +  L +       +IHG
Sbjct: 469 NRDRRDEVIERIQNNCQAGKQAYWVCPLVEESSALDVQSAQLTYEDLSDRLDIRTGLIHG 528

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M   DK++VM +FK G   LLIATTVIEVG+DV +AS+++IENAE  GL+QLHQLRGRV
Sbjct: 529 KMKAADKQAVMQAFKAGDIDLLIATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRV 588

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG   S C+LLY  PLS     RL+VLK++ DGF+IA++DL+ R  GE+LG +Q+G   
Sbjct: 589 GRGSAKSFCVLLYQLPLSPTGIERLNVLKDSTDGFVIAQKDLELRGAGELLGKRQTGDMG 648

Query: 644 FLIAQPELHDSLLEIA 659
           + +A     ++LLE A
Sbjct: 649 YYLADIVRDEALLEAA 664


>gi|157963695|ref|YP_001503729.1| ATP-dependent DNA helicase RecG [Shewanella pealeana ATCC 700345]
 gi|157848695|gb|ABV89194.1| ATP-dependent DNA helicase RecG [Shewanella pealeana ATCC 700345]
          Length = 696

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 254/681 (37%), Positives = 388/681 (56%), Gaps = 32/681 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV KK +  L+K+      + T   DLLF+ P  + DR     I+ +     
Sbjct: 11  LVPITDLKGVAKKMAERLAKL------SITTVQDLLFHLPLRYEDRTQVYPIASLYPGSY 64

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            TI   I Q S     ++R     + D TG +TL FF       +N    G  I   G+I
Sbjct: 65  GTIEAII-QSSQIIQGRKRMLTCTVRDDTGSLTLRFFNFSVAQ-RNGLEIGMTIRAYGEI 122

Query: 130 KKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP---- 183
           ++  + + ++HP Y +    +D+     +  VY    GL    + K+  +AL+ L     
Sbjct: 123 RRSNHGVEIIHPEYKLISPGEDLQLSDTLTPVYPTTEGLKQASWIKLTEQALAMLDNGGL 182

Query: 184 --VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQ 237
             +LP  ++ + L  K      +A  I+H P          + T PA++RL  +ELLA  
Sbjct: 183 QELLPTNLQPNNLDLK------QALQILHRPNNQVSLFELEQGTHPAQQRLIQEELLAHN 236

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +++L +R++  ++  + +N  G++    L ++PF PT +Q+  + DI QD+++   M+R+
Sbjct: 237 LSMLRLRQRSNRDSAVSMNATGQLLNPFLASLPFKPTGAQQRVVADITQDLAKHEPMMRL 296

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKTLVA +A   A+E+G Q  +MAP  +LA+QH    K + +   + V  + G
Sbjct: 297 VQGDVGSGKTLVAALAALQAIESGYQVAMMAPTELLAEQHAINFKSWFEPLGLKVGWLAG 356

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +    R ++L  I  G AHI+IGTHA+FQ+ +Q+ KL L+I+DEQHRFGV QRL L +K
Sbjct: 357 KLKGKARAQSLADIESGDAHIVIGTHAIFQEQVQFNKLALIIIDEQHRFGVHQRLGLREK 416

Query: 418 ATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             +    PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I   R +EV+E
Sbjct: 417 GISQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAISEQRREEVLE 476

Query: 474 RLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531
           R++   +++ ++AYW+C  IEE +    ++  +    L        + ++HGRM   +K+
Sbjct: 477 RVRQAAINDKRQAYWVCTLIEESEALECQAAEDTAEELKRALPELKVGLVHGRMKPAEKQ 536

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            +M  FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S 
Sbjct: 537 QIMADFKAGELNLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASH 596

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C+LLY  PLS  +  R+ VL+ + DGF+IA++DL+ R  GE+LG KQ+G+    IA    
Sbjct: 597 CVLLYKAPLSATATKRIGVLRQSNDGFVIAQQDLEIRGPGEVLGTKQTGIADMKIADLMR 656

Query: 652 HDSLLEIARKDAKHILTQDPD 672
             +L+   +K A H++ Q P+
Sbjct: 657 DQALIPHIQKLAAHVMQQAPN 677


>gi|296112326|ref|YP_003626264.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis RH4]
 gi|295920020|gb|ADG60371.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis RH4]
 gi|326561837|gb|EGE12172.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 7169]
 gi|326563383|gb|EGE13648.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 12P80B1]
 gi|326568942|gb|EGE19011.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis BC1]
          Length = 698

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/676 (37%), Positives = 377/676 (55%), Gaps = 50/676 (7%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++   GVG+  +  L+++         R  D+L + P  + DR     I ++S    V 
Sbjct: 11  PVTALSGVGQALAGRLAEL------GIHRIFDMLLHLPRDYEDRSRVIAIKDVSHGMSVL 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G ++    +  + R    + L D TGEITL FF+    +L  +   G KITV G+IK 
Sbjct: 65  VAGVVT----WVEKNRTGLSVTLEDATGEITLRFFHTYPSLLTTMMV-GAKITVFGEIKV 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
            +    M HP Y    ++     L+  +Y    G++ +  ++++  AL+        +++
Sbjct: 120 SRYGTQMSHPDYHLTGTKKFESGLLP-IYPTIKGINQNKLRQLVRLALTA-------VQQ 171

Query: 192 DLLQKKS-----------FPSIAEAFNIIHNPRKAKDF-----------EWTSPARERLA 229
           D +   S              +  A   +H P    D            + T PA  R+ 
Sbjct: 172 DGIHGLSETQLKAAGVELTGDLLPALKAVHLPEIHADIFSQTALLAGLKDRTHPACRRII 231

Query: 230 YDELLAGQIALLLMRK---QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286
            +EL+A Q++ L  R    Q+K     PI+    +A++++  +PF  T +Q+  I + + 
Sbjct: 232 IEELVAHQVSFLFRRNHIYQYKAPKCDPIS---PLAKQLVAGLPFELTAAQKRVIDEAVS 288

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           DM+    MLR++QGDVG+GKTLVA +    A+++G Q  +MAP  ILA+QH    +K+ +
Sbjct: 289 DMATSRPMLRLIQGDVGAGKTLVAAMTACYALDSGWQVAVMAPTEILAEQHLINFQKWFE 348

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              I V  + G      R  AL+ I   Q  I++GTHALF D++ + KL LVI+DEQHRF
Sbjct: 349 PLGIGVGWLAGKQTAKERTAALDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQHRF 408

Query: 407 GVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           GV+QRL+LT K     APH L MTATPIPRTL ++  GD+D+S I E P  R PI TV I
Sbjct: 409 GVEQRLRLTNKGVSGGAPHQLAMTATPIPRTLAMSMYGDMDVSIIDELPPKRTPITTVTI 468

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             +R DEVIER++     GK+AYW+CP +EE    + +S    +  L +       +IHG
Sbjct: 469 NRDRRDEVIERIQNNCQAGKQAYWVCPLVEESSALDVQSAQLTYEDLSDRLDIRTGLIHG 528

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M   DK++VM +FK G   LLIATTVIEVG+DV +AS+++IENAE  GL+QLHQLRGRV
Sbjct: 529 KMKAADKQAVMQAFKAGDIDLLIATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRV 588

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG   S C+LLY  PLS     RL+VLK++ DGF+IA++DL+ R  GE+LG +Q+G   
Sbjct: 589 GRGSAKSFCVLLYQLPLSPTGIERLNVLKDSTDGFVIAQKDLELRGAGELLGKRQTGDMG 648

Query: 644 FLIAQPELHDSLLEIA 659
           + +A     ++LLE A
Sbjct: 649 YYLADIVRDEALLEAA 664


>gi|221134070|ref|ZP_03560375.1| ATP-dependent DNA helicase RecG [Glaciecola sp. HTCC2999]
          Length = 695

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERIV 70
           P++  +GVG K +    K+ N G     R + D+LF+ P  + DR +   I ++      
Sbjct: 12  PITALKGVGAKVA---EKLQNLG----LRTVQDVLFHLPHRYEDRTHIYNIVDLYHGIHA 64

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           TI G + Q S     +RR   I + D +G IT  FFY      K     G ++   G+ +
Sbjct: 65  TIQGEVIQ-SDIVFGRRRALVIKIKDASGIITCRFFYFSAAQ-KAQLTPGTQVRAFGEYR 122

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLP--VL 185
           + K+ +  VHP Y   N  DV  P+ E+   VY    G+     + +  +AL  L    L
Sbjct: 123 RGKHALECVHPEYKVVNPNDV-MPVAESLTPVYPTTEGVKQVTLRNLTEQALLALKQGAL 181

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241
            E +   +  ++   S++EA +I+H P          E   PA++RL  +EL+A Q ++L
Sbjct: 182 AELMPDGMYAQQL--SLSEALHIVHRPPPDVSLHLFEEGKHPAQQRLILEELMAHQCSVL 239

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            MR   + + G  I  +  + Q  L+ +PFSPT +Q   +++I  DM Q   M+R++QGD
Sbjct: 240 KMRANNEVQPGFAIAQDEALQQAFLQTLPFSPTNAQARVVREIQHDMQQPYPMMRLVQGD 299

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A    + AG Q V+MAP  +LA+QH      +     I V  + G +  
Sbjct: 300 VGSGKTLVAALAALNVIAAGYQVVLMAPTELLAEQHAHNFSSWLSPLGIHVGWLAGKLKG 359

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R + L  +  G  ++++GTHA+FQ+ +QY  L +VI+DEQHRFGV QRL L +K    
Sbjct: 360 KARDQVLTALESGDINLLVGTHAVFQEKVQYKNLAMVIIDEQHRFGVHQRLALREKGEQQ 419

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-K 476
              PH L+MTATPIPRTL +T+  D++ S I E P GR P++T+++P  R D++I R+ K
Sbjct: 420 GRFPHQLVMTATPIPRTLAMTAYADLNTSVIDELPPGRTPVQTIVLPAARRDQIIARVHK 479

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
            V    ++ YW+C  IEE +    ++  + F +L    T   I ++HGRM   +K+++M 
Sbjct: 480 SVTEANRQVYWVCTLIEESEVLQSQAAEDTFIALRTALTDLRIGLVHGRMKPAEKQTIMA 539

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK     +L+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L+
Sbjct: 540 QFKAAELDVLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSIESHCVLM 599

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y   LSK +  RL VL+++ DGF IA+ DL+ R  GEILG KQ+G+    IA       L
Sbjct: 600 YDGNLSKTATKRLGVLRDSNDGFYIAQMDLEIRGPGEILGTKQTGIADLKIADLVRDGHL 659

Query: 656 LEIARKDAKHILTQDP 671
           LE  ++ A+H+ T  P
Sbjct: 660 LEQVQQLAEHLFTHHP 675


>gi|326565924|gb|EGE16085.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 103P14B1]
 gi|326575426|gb|EGE25351.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 101P30B1]
 gi|326577957|gb|EGE27821.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis O35E]
          Length = 698

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/676 (37%), Positives = 377/676 (55%), Gaps = 50/676 (7%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++   GVG+  +  L+++         R  D+L + P  + DR     I ++S    V 
Sbjct: 11  PVTALSGVGQALAGRLAEL------GIHRIFDMLLHLPRDYEDRSRVIAIKDVSHGMSVL 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G ++    +  + R    + L D TGEITL FF+    +L  +   G KITV G+IK 
Sbjct: 65  VAGVVT----WVEKNRTGLSVTLEDATGEITLRFFHTYPSLLTTMMV-GAKITVFGEIKV 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
            +    M HP Y    ++     L+  +Y    G++ +  ++++  AL+        +++
Sbjct: 120 GRYGTQMSHPDYHLTGTKKFESGLLP-IYPTIKGINQNKLRQLVRLALTA-------VQQ 171

Query: 192 DLLQKKS-----------FPSIAEAFNIIHNPRKAKDF-----------EWTSPARERLA 229
           D +   S              +  A   +H P    D            + T PA  R+ 
Sbjct: 172 DGIHGLSETQLKAAGVELTGDLLPALKAVHLPEIHADIFSQTALLAGLKDRTHPACRRII 231

Query: 230 YDELLAGQIALLLMRK---QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286
            +EL+A Q++ L  R    Q+K     PI+    +A++++  +PF  T +Q+  I + + 
Sbjct: 232 IEELVAHQVSFLFRRNHIYQYKAPKCDPIS---PLAKQLVAGLPFELTAAQKRVIDEAVS 288

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           DM+    MLR++QGDVG+GKTLVA +    A+++G Q  +MAP  ILA+QH    +K+ +
Sbjct: 289 DMATSRPMLRLIQGDVGAGKTLVAAMTACYALDSGWQVAVMAPTEILAEQHLINFQKWFE 348

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              I V  + G      R  AL+ I   Q  I++GTHALF D++ + KL LVI+DEQHRF
Sbjct: 349 PLGIGVGWLAGKQTAKERTAALDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQHRF 408

Query: 407 GVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           GV+QRL+LT K     APH L MTATPIPRTL ++  GD+D+S I E P  R PI TV I
Sbjct: 409 GVEQRLRLTNKGVSGGAPHQLAMTATPIPRTLAMSMYGDMDVSIIDELPPKRTPITTVTI 468

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             +R DEVIER++     GK+AYW+CP +EE    + +S    +  L +       +IHG
Sbjct: 469 NRDRRDEVIERIQNNCQAGKQAYWVCPLVEESSALDVQSAQLTYEDLSDRLDIRTGLIHG 528

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M   DK++VM +FK G   LLIATTVIEVG+DV +AS+++IENAE  GL+QLHQLRGRV
Sbjct: 529 KMKAADKQAVMQAFKAGDIDLLIATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRV 588

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG   S C+LLY  PLS     RL+VLK++ DGF+IA++DL+ R  GE+LG +Q+G   
Sbjct: 589 GRGSAKSFCVLLYQLPLSPTGIERLNVLKDSTDGFVIAQKDLELRGAGELLGKRQTGDMG 648

Query: 644 FLIAQPELHDSLLEIA 659
           + +A     ++LLE A
Sbjct: 649 YYLADIVRDEALLEAA 664


>gi|229586932|ref|YP_002845433.1| ATP-dependent DNA helicase RecG [Rickettsia africae ESF-5]
 gi|228021982|gb|ACP53690.1| ATP-dependent DNA helicase RecG [Rickettsia africae ESF-5]
          Length = 713

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 257/644 (39%), Positives = 370/644 (57%), Gaps = 53/644 (8%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLFY P S+ ++   P ++E+ +  I+  T  + +  +   +  +P KI  ++ TG + 
Sbjct: 37  DLLFYLPVSYQNKILSPNLTEVRDGDIIQ-TEIVVESINLPKKSSQPLKITASNDTGSLL 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159
           L+FF++    + N    G    ++GK++   + + + HP +I      VN  L   IE +
Sbjct: 96  LVFFHKPPPFIFNKLQVGTSHIISGKVQFFDHYLQIAHPEFI------VNPKLAKEIEPI 149

Query: 160 YSLPTGLS-----------VDLFKK---------------IIVEALSRLPVLPEWIEKDL 193
           YSL   LS           +++F++               II++ L  L V     E  +
Sbjct: 150 YSLTYLLSNKQLYSYIIKAIEIFEEKCKSIEDKEVKDYLDIILQNLQMLHVFHHCEEACM 209

Query: 194 LQKKSFPSIAEAFNIIHN--PRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFK 248
             K+S         +I++  P+  K F   +  + A+++LA  EL+A QI+LL +R Q  
Sbjct: 210 PTKQS-----SNVKLINSRLPQPLKGFRNDDLYTNAKKQLAAKELIANQISLLNVRTQIS 264

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +  G        I   IL  + F  T  Q+  I++I  D S K  M+R+LQGDVGSGKTL
Sbjct: 265 RRQGNIYPKAVSIQANILNELGFELTSYQKQVIEEIECDQSDKIEMMRLLQGDVGSGKTL 324

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL+ M   V  G QA +MAP  +LA QHYEF  K  +NT I V ++TG +    R+  +
Sbjct: 325 VALLTMVNVVATGFQATLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGTARKNIM 384

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            ++ + +  I++GTHALFQ+ + + KL  +++DEQHRFGVQQRL L  K   P VL+MTA
Sbjct: 385 IQLDNDEIDILVGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTA 444

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPR+L LT  GD+ ISK+  KP  R PI T  + +N+I+ +I  +   L  G++ YWI
Sbjct: 445 TPIPRSLALTMFGDMTISKLMGKPKSRLPIATNTMSVNKIEHIIVAINKKLIAGERVYWI 504

Query: 489 CPQIEE------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           CP IE+      +++S    V+ RFNS+   +     IIHG+M +  K+ +M  FK G  
Sbjct: 505 CPLIEQGEKETSEEDSLLMDVMNRFNSIDNIYQGYTGIIHGKMKNEQKDQIMKQFKEGEI 564

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LS 601
           K+L+ATTVIEVGID+ +A++IIIENAE FGLAQLHQLRGRVGRG   S CILLY+P  L 
Sbjct: 565 KILVATTVIEVGIDIPEATLIIIENAEQFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLR 624

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
           K +  R  ++K T DGF IAE+DLK R  GEILG+KQSG   F 
Sbjct: 625 KVARGRFEIMKQTNDGFYIAEQDLKLRGSGEILGVKQSGEIAFF 668


>gi|238650653|ref|YP_002916505.1| ATP-dependent DNA helicase [Rickettsia peacockii str. Rustic]
 gi|238624751|gb|ACR47457.1| ATP-dependent DNA helicase [Rickettsia peacockii str. Rustic]
          Length = 713

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/640 (39%), Positives = 371/640 (57%), Gaps = 45/640 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLFY P S+ ++   P ++E+ ++ I+  T  + +  +   +  +P  I  ++ TG + 
Sbjct: 37  DLLFYLPVSYQNKILSPNLTEVRDDDIIQ-TEIVVESINLPKKSSQPLTITASNDTGSLL 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159
           L+FF++    + N    G    ++GK++   + + + HP +I      VN  L   IE +
Sbjct: 96  LVFFHKPPPFIFNKLQVGTSHIISGKVQFFDHYLQIAHPEFI------VNPKLAKEIEPI 149

Query: 160 YSLPTGLS-----------VDLFKK---------------IIVEALSRLPVLPEWIEKDL 193
           YSL   LS           +++F++               II++ L  L V     E  +
Sbjct: 150 YSLTYLLSNKQLYSYIIKAIEIFEEKCKSIEDKEVKDYLDIILQNLQMLHVFHHCEEACM 209

Query: 194 LQKKSFPSIAEAFNIIHNPRKA-KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
             K+S  ++    + +  P K  ++ +  + A+++LA  EL+A QI+LL +R Q  +  G
Sbjct: 210 PTKQS-SNVKLINSRLPQPLKGLRNDDLYTNAKKQLAAKELIANQISLLNVRTQISRRQG 268

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
                   I   IL  + F  T  Q+  I++I  D S K  M+R+LQGDVGSGKTLVAL+
Sbjct: 269 NIYPKAVSIQANILNELGFELTSYQKQVIEEIECDQSDKIEMMRLLQGDVGSGKTLVALL 328

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M   V  G QA +MAP  +LA QHYEF  K  +NT I V ++TG +  A R+  + ++ 
Sbjct: 329 TMVNVVATGFQATLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGAARKNIMIQLD 388

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           + +  I++GTHALFQ+ + + KL  +++DEQHRFGVQQRL L  K   P VL+MTATPIP
Sbjct: 389 NDEIDILVGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPIP 448

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R+L LT  GD+ ISK+  KP  R PI T  + +N+I+ +I  +   L  G++ YWICP I
Sbjct: 449 RSLALTMFGDMTISKLMGKPKSRLPIATNTMSVNKIEHIIVAINKKLIAGERVYWICPLI 508

Query: 493 EE------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E+      +++S    V+ RFNS+   +     IIHG+M +  K+ +M  FK G  K+L+
Sbjct: 509 EQGGKETPEEDSLLMDVMNRFNSIDNIYQGYTGIIHGKMKNEQKDQIMKQFKEGEIKILV 568

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSY 605
           ATTVIEVGID+ +A++IIIENAE FGLAQLHQLRGRVGRG   S CILLY+P  L K + 
Sbjct: 569 ATTVIEVGIDIPEATLIIIENAEQFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLRKVAR 628

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
            R  ++K T DGF IAE+DLK R  GEILG+KQSG   F 
Sbjct: 629 GRFEIMKQTNDGFYIAEQDLKLRGSGEILGVKQSGEIAFF 668


>gi|320539304|ref|ZP_08038974.1| ATP-dependent DNA helicase [Serratia symbiotica str. Tucson]
 gi|320030696|gb|EFW12705.1| ATP-dependent DNA helicase [Serratia symbiotica str. Tucson]
          Length = 704

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 263/692 (38%), Positives = 395/692 (57%), Gaps = 34/692 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   LN +  PL+T  G+G   +  L+KI       ET   DLLF+ P  + DR     
Sbjct: 12  MKGRLLNAV--PLTTLSGIGASQAGKLAKI-----GLET-IQDLLFHLPLRYEDRTRLYP 63

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+ G I + S     +RR     ++DGTG I +L F+     +KN    G
Sbjct: 64  INDLLPGIYATVEGEILR-SDTSFGRRRMMTCQISDGTG-ILILRFFNFNAAMKNSLATG 121

Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEA 178
           R++T  G+IK+  +    +HP Y I   S +++    +  VY    G+   + +K+  +A
Sbjct: 122 RRVTAYGEIKRGNHGAESIHPEYRIQGESNEIDLQASLTPVYPTTEGIRQAMLRKLTDQA 181

Query: 179 LSRL------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFEWTS-PARERL 228
           L  L       +LP  +  +L+      S+ +A + +H P  A    D E    PA+ RL
Sbjct: 182 LELLDTCTITELLPPEVRGELM------SLPQALHTLHRPPPAIQLTDLEQGKHPAQRRL 235

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
             +ELLA  +++L +R   +    +P+  + ++ +  L  +PFSPT +QE  + DI  DM
Sbjct: 236 ILEELLAHNLSMLAVRAGAQSYQALPLLPDNRLKKPFLAQLPFSPTSAQERVVADIEADM 295

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
            +   M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +  
Sbjct: 296 QKTFPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHATNFRQWFEPL 355

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            + V  + G      R    E IA GQ  +++GTHA+FQ+ +Q+  L L+I+DEQHRFGV
Sbjct: 356 GLEVGWLAGKQKGKARIAQQEAIASGQVSMVVGTHAIFQEQVQFNGLALIIIDEQHRFGV 415

Query: 409 QQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            QRL L +K        H L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP
Sbjct: 416 HQRLALWEKGEDQGFHAHQLIMTATPIPRTLAMTAYADLDTSVINELPPGRTPVTTVAIP 475

Query: 465 INRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522
             R  ++I+R+K   + EG++AYW+C  IE  +    ++    +  L        +A++H
Sbjct: 476 DTRRADIIQRVKNACMEEGRQAYWVCTLIEGSELLEAQAAEVTWQELKAALPELKVALVH 535

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GRM   +K++VM SFK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGR
Sbjct: 536 GRMKAQEKQAVMQSFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGR 595

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG   S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  
Sbjct: 596 VGRGAVASHCVLLYKTPLSKMAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGST 655

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           +F +A      +++   ++ A+HI  Q P+L 
Sbjct: 656 EFKVADLLRDQAMIPEVQRIARHIHQQHPELA 687


>gi|322835059|ref|YP_004215086.1| ATP-dependent DNA helicase RecG [Rahnella sp. Y9602]
 gi|321170260|gb|ADW75959.1| ATP-dependent DNA helicase RecG [Rahnella sp. Y9602]
          Length = 693

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 257/675 (38%), Positives = 392/675 (58%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   +  L+K+       ET   DLL + P  + DR     I+++      T
Sbjct: 10  PLTSLSGVGASQADKLAKL-----GLET-IQDLLLHLPLRYEDRTRLYTINDLQPGIFAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G + + S     +RR     ++DGTG  TL FF     M KN    GR++T  G+IK+
Sbjct: 64  IEGEVLR-SDISFGRRRMLTCQISDGTGMATLRFFNFNAAM-KNSLATGRRVTAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFH--NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
                 ++HP Y     NS+ V    +  VY    G+     +K+  +AL  L  +P  E
Sbjct: 122 GTIGAEIIHPEYRIQGENSEVVLQESLTPVYPTTEGIRQATLRKLTDQALELLDTVPVAE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLLM 243
            + ++L   +S   + +A +++H P    +  D E    PA+ RL  +ELLA  +++L +
Sbjct: 182 LLPEEL--SRSLIPLPQALHLLHRPPPDIQLADLEKGHHPAQRRLIMEELLAHNLSMLAV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   +    +P++ + ++  + L ++PFSPT +Q   + +I QD+++   M+R++QGDVG
Sbjct: 240 RAGTQSYKALPLHHDDRLKNQFLASLPFSPTGAQARVVAEIEQDLAKSYPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   I V  + G      
Sbjct: 300 SGKTLVAALAALCAIAQGQQVGLMAPTELLAEQHANNFRQWFEPLGIQVGWLAGKQKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R+   + IA GQ  +++GTHA+FQ+ + +  L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RQAQQDAIASGQVSMVVGTHAIFQEQVLFSSLSLVIIDEQHRFGVHQRLALWEKGLQQGF 419

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I R+K   
Sbjct: 420 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDIISRVKSAC 479

Query: 480 S-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             E ++AYW+C  IEE +    ++    +  L E   + +I ++HGRM   +K++VM +F
Sbjct: 480 EQENRQAYWVCTLIEESEMLEAQAAEATWEGLKEALPALNIGLVHGRMKAQEKQAVMQAF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 540 KQGEVQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      +++ 
Sbjct: 600 TPLSKTAQKRLQVLRDSNDGFVIAQQDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMIP 659

Query: 658 IARKDAKHILTQDPD 672
             ++ A+++  Q PD
Sbjct: 660 DVQRIARYLQQQFPD 674


>gi|15892824|ref|NP_360538.1| ATP-dependent DNA helicase RecG [Rickettsia conorii str. Malish 7]
 gi|15620008|gb|AAL03439.1| ATP-dependent DNA helicase RecG [Rickettsia conorii str. Malish 7]
          Length = 713

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 259/653 (39%), Positives = 376/653 (57%), Gaps = 46/653 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLFY P S+ ++   P ++E+ +  I+  T  + +  +   +  +P KI  ++ TG + 
Sbjct: 37  DLLFYLPVSYQNKILSPNLTEVRDGDIIQ-TEIVVESINLPKKSSQPLKITASNDTGSLL 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159
           L+FF++    + N    G    ++GK++   + + + HP +I      VN  L   IE +
Sbjct: 96  LVFFHKPPPFIFNKLQVGTSHIISGKVQFFDHYLQIAHPEFI------VNPKLAKEIEPI 149

Query: 160 YSLPTGLS-----------VDLFKK---------------IIVEALSRLPVLPEWIEKDL 193
           YSL   LS           +++F++               II++ L  L V     E  +
Sbjct: 150 YSLTYLLSNKQLYSYIIKAIEIFEEKCKSIEDKEVKDYLDIILQNLQMLHVFHHCEEACM 209

Query: 194 LQKKSFPSIAEAFNIIHNPRKA-KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
             K+S  ++    + +  P K   + +  + A+++LA  EL+A QI+LL +R Q  +  G
Sbjct: 210 PTKQS-SNVKLINSRLPQPLKGLHNDDLYTNAKKQLAAKELIANQISLLNVRTQISRRQG 268

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
                   I   IL  + F  T  Q+  I++I  D S K  M+R+LQGDVGSGKTLVAL+
Sbjct: 269 NIYPKAVSIQANILNELGFELTSYQKQVIEEIECDQSDKIEMMRLLQGDVGSGKTLVALL 328

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M   V  G QA +MAP  +LA QHYEF  K  +NT I V ++TG +    R+  + ++ 
Sbjct: 329 TMVNVVATGFQATLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGTARKNIMIQLD 388

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           + +  I++GTHALFQ+ + + KL  +++DEQHRFGVQQRL L  K   P VL+MTATPIP
Sbjct: 389 NDEIDILVGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPIP 448

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R+L LT  GD+ ISK+  KP  R PI T  + +N+I+ +I  +   L  G++ YWICP I
Sbjct: 449 RSLALTMFGDMTISKLMGKPKSRLPIATNTMSVNKIEHIIVAINKKLIAGERVYWICPLI 508

Query: 493 EE------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E+      +++S    V+ RFNS+   +     IIHG+M +  K+ +M  FK G  K+L+
Sbjct: 509 EQGEKETSEEDSLLMDVMNRFNSIDNIYQGYTGIIHGKMKNEQKDQIMKQFKEGEIKILV 568

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSY 605
           ATTVIEVGID+ +A++IIIENAE FGLAQLHQLRGRVGRG   S CILLY+P  L K + 
Sbjct: 569 ATTVIEVGIDIPEATLIIIENAEQFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLRKVAR 628

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ-PELHDSLLE 657
            R  ++K T DGF IAE+DLK R  GEILG+KQSG   F  A   + +D LL+
Sbjct: 629 GRFEIMKQTNDGFYIAEQDLKLRGSGEILGVKQSGEIAFFFANLADDYDLLLK 681


>gi|33152902|ref|NP_874255.1| ATP-dependent DNA helicase RecG [Haemophilus ducreyi 35000HP]
 gi|33149127|gb|AAP96644.1| ATP-dependent DNA helicase RecG [Haemophilus ducreyi 35000HP]
          Length = 697

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 264/694 (38%), Positives = 391/694 (56%), Gaps = 36/694 (5%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYR 58
           M    LN +  PL +  GVG   +  L +  I N          DLLF+ P  + DR   
Sbjct: 1   MEKQLLNDI--PLISLAGVGTAIAEKLHRLAIYNVQ--------DLLFHLPIRYEDRTRI 50

Query: 59  PKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
             I+++     VTI G + Q +  +  +R    ++L+DGT +I L FF     M KN F 
Sbjct: 51  TAIADVRPAHFVTIEGQV-QLTEVEYSRRAILAVVLSDGTSKIMLKFFNFNAGM-KNGFA 108

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
            G ++   G+IK+ +    + HP Y  I HN        +  +Y+   GL  +  +K+  
Sbjct: 109 VGVRVKAFGEIKRGRFMAEIHHPEYQIIRHNQPLTLAESLTPIYTTTEGLKQNSLRKLTE 168

Query: 177 EALSRLPVLPEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLA 229
           +AL+   +L +    +LL  +  P   ++ EA  ++H P      E  +    PA++RL 
Sbjct: 169 QALA---LLNKIQIAELLPAQYNPYQYNLTEALQLLHCPPPNISAETLAQGEHPAQKRLI 225

Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
           ++ELLA  +A+  +R   K+    P++ + ++  + L N+ F PT +Q     +I  D++
Sbjct: 226 FEELLAHNLAMQQLRLGVKQLYATPLHYQTELKTRFLANLAFQPTPAQTRVTAEIENDLA 285

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           Q   M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH     ++ +   
Sbjct: 286 QAVPMMRLVQGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHATNFTQWLKPFD 345

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           I V  + G +    R   L  I  G+  +IIGTHALFQ+S+ ++ L LVI+DEQHRFGV 
Sbjct: 346 INVGWLAGKIKGKARTAQLTAIEQGEVQMIIGTHALFQESVAFHDLALVIIDEQHRFGVH 405

Query: 410 QRLKLTQKATA--------PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           QRL L  K           PH L+MTATPIPRTL +T   D+D S I + P GR PIKT+
Sbjct: 406 QRLTLRAKGAKTINGQEIYPHQLIMTATPIPRTLAMTVYADLDTSLIDQLPPGRTPIKTI 465

Query: 462 IIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519
           +I   R  EV++R+     +EG++AYW+C  I+E +    ++       L        I 
Sbjct: 466 VIAEERRAEVVQRVYHACKNEGRQAYWVCTLIDESEVLEAQAAAAIAEDLQGALPDLRIG 525

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           ++HGRM   +K+++M +FK  T  LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQL
Sbjct: 526 LVHGRMKPQEKQTIMAAFKAATLDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQL 585

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           RGRVGRG   S C+L+Y PPL K S  RL V+++++DGF IAE+DL+ R  GEILG KQ+
Sbjct: 586 RGRVGRGATASHCVLMYKPPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQT 645

Query: 640 GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           GM +F +A       L+ + +  AK I+++ P L
Sbjct: 646 GMAEFKVANLMRDRKLIPLVQHSAKQIISEHPAL 679


>gi|270265246|ref|ZP_06193508.1| hypothetical protein SOD_l00960 [Serratia odorifera 4Rx13]
 gi|270040880|gb|EFA13982.1| hypothetical protein SOD_l00960 [Serratia odorifera 4Rx13]
          Length = 693

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 260/679 (38%), Positives = 390/679 (57%), Gaps = 32/679 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   +  L+KI       ET   DLL + P  + DR     I+++      T
Sbjct: 10  PLTTLSGVGASQAGKLAKI-----GLET-IQDLLLHLPLRYEDRTRLYPINDLLPGIFAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + S     +RR     ++DGTG +T+ FF     M KN    GR++T  G+IK+
Sbjct: 64  VEGEVLR-SDISFGRRRMLTCQISDGTGLLTMRFFNFNAAM-KNSLAAGRRVTAYGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRL------P 183
             +   ++HP Y I   S +V     +  VY    G+     +K+  +AL  L       
Sbjct: 122 GNHGAEIIHPEYRIQGESSEVELQESLTPVYPTTEGIRQATLRKLTDQALELLDTCAIAE 181

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIA 239
           +LP  +   L+      S+ +A + +H P    + +D E    PA++RL  +ELLA  ++
Sbjct: 182 LLPPELSGGLM------SLPQALHTLHRPPPDIQLEDLEQGKHPAQKRLILEELLAHNLS 235

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +L +R   +    +P+  + ++ Q+ L  +PFSPT +QE  + DI  DM +   M+R++Q
Sbjct: 236 MLAVRAGAQSYQALPLMPDDRLKQQFLAELPFSPTGAQERVVADIEADMQKGFPMMRLVQ 295

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V  + G  
Sbjct: 296 GDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRQWFEPLGLEVGWLAGKQ 355

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R    E IA G+  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K  
Sbjct: 356 KGKARIAQQEAIASGKVSMVVGTHAIFQEQVQFSGLALVIIDEQHRFGVHQRLALWEKGE 415

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                 H L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R+
Sbjct: 416 EQGFHAHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRADIIQRV 475

Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           K   + EG++AYW+C  IEE +    ++    +  L        +A++HGRM   +K++V
Sbjct: 476 KSACMEEGRQAYWVCTLIEESELLEAQAAEATWEELKTALPELKVALVHGRMKAQEKQAV 535

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 536 MQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 595

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      
Sbjct: 596 LLYKTPLSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQ 655

Query: 654 SLLEIARKDAKHILTQDPD 672
           +++   ++ A+HI  Q P+
Sbjct: 656 AMIPEVQRVARHIHQQYPE 674


>gi|117618450|ref|YP_854812.1| ATP-dependent DNA helicase RecG [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559857|gb|ABK36805.1| ATP-dependent DNA helicase RecG [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 690

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/673 (38%), Positives = 380/673 (56%), Gaps = 25/673 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L + +GVG K      K+   G A      DLLF+ P  + DR     I ++       +
Sbjct: 9   LDSLKGVGSKMQ---EKLERLGLAT---VQDLLFHLPLRYEDRTQVWPIGDLPPGLHGAV 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G I Q +   + +RR     ++DGTG +TL FF   T   KN    GR +   G+++  
Sbjct: 63  EGEI-QDTQLVMGRRRMLVCRISDGTGTLTLRFF-NFTAAQKNSLSPGRLMRCFGEVRPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           K  + M HP Y     +        +  VY    GL     + +  +AL++L +   +  
Sbjct: 121 KYGLEMAHPEYKLLGEEQAGQTEEALTPVYPTTEGLRQLTLRSLTDQALAQLDL---YGV 177

Query: 191 KDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLM 243
           ++LL    +P    +A A  ++H P  +           PA++RL  +ELLA  +++L +
Sbjct: 178 EELLPAGLYPQQIDLAAALKLLHRPPPSVALALLESGQHPAQQRLVLEELLAHNLSVLKV 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q + ++   +     + +++L  +PF+PT +Q   + +I +D+ Q + M+R++QGDVG
Sbjct: 238 RAQAQTQLARALKPAPALVEQLLGALPFTPTGAQNRVVAEIGRDLQQSHPMMRLVQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+  G Q  +MAP  +LA+QH     K+ +   I V  + G      
Sbjct: 298 SGKTLVAALAALQAIGNGCQVGLMAPTELLAEQHAINFAKWLEPLGIGVGWLAGKQKGKA 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R +AL  IA G   +++GTHA+FQ+ + + +L LVI+DEQHRFGV QRL L +K      
Sbjct: 358 REEALAAIADGSVKMVVGTHAIFQEQVVFQRLALVIIDEQHRFGVHQRLALREKGEREGV 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T+  D+D S I E P GR PI TV +P +R  +VIER+++  
Sbjct: 418 HPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPITTVALPDSRRQDVIERVRLAC 477

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            EGK+AYW+C  IEE +    ++  +    L        I ++HGRM  ++K+ VM+ FK
Sbjct: 478 EEGKQAYWVCTLIEESEVLECQAAEDTAAELQNLLPGLHIGLVHGRMRPVEKQRVMEEFK 537

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH 
Sbjct: 538 AGMLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHA 597

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLSK + +RL VL+ T DGFLIA+ DL+ R  GE+LG +Q+G+    IA       L+  
Sbjct: 598 PLSKTAQSRLGVLRETNDGFLIAQRDLELRGPGELLGTRQTGLADLKIADLVRDQPLIPQ 657

Query: 659 ARKDAKHILTQDP 671
            +K A+ ++ + P
Sbjct: 658 VQKMARFLMDRHP 670


>gi|307151126|ref|YP_003886510.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 7822]
 gi|306981354|gb|ADN13235.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 7822]
          Length = 818

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 245/684 (35%), Positives = 395/684 (57%), Gaps = 29/684 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS    VG + S  L+++            DLLFY+P   ID   +  I+ +     VT
Sbjct: 124 PLSALVEVGYRKSDLLARL------GLKTVQDLLFYYPRDHIDYARQVNIANLVAGETVT 177

Query: 72  ITGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKT--------EMLKNVFFEG 120
           I G + + + F   K +    +++L+ D TG+I L  F+           E  K ++  G
Sbjct: 178 IIGTVKRCNCFTSPKNKQLSIFELLIKDHTGQIKLNRFFAGNRFTNRGWQERQKRLYAVG 237

Query: 121 RKITVTGKIKKLKNRIIMVHPH-----YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175
             +  +G +K+ K  + + +P       +  N + +    +  VY L  G+  DL +K +
Sbjct: 238 SLVAASGLVKQNKYGLTLENPEIEVLDSLGSNIESLKIGRVLPVYPLTEGVPADLIRKAV 297

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           +EA+  +  L + + KD+        + EA   IH P      E  + AR RL +DE   
Sbjct: 298 IEAMGAIAQLKDPLPKDIQNSYGLIKLKEAIANIHYPETP---EILAHARRRLVFDEFFF 354

Query: 236 GQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
            Q+  L  R++ K+ +     N  G++ +K    +PF+ T +Q+  I +I QD+     M
Sbjct: 355 LQLGFLQRRQEQKQTQKSASFNPRGELIEKFNEILPFALTGAQKRVIGEIQQDLKGTTPM 414

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++QGDVGSGKT+VA+ A+ AA+++G QA +MAP  +LA+QHY  +  +     + VE+
Sbjct: 415 NRLVQGDVGSGKTIVAVFAILAAIQSGYQAALMAPTEVLAEQHYRKLVGWFNLLHLPVEL 474

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+   + RR+   ++  G+  +++GTHAL QD + +  L LV++DEQHRFGVQQR +L
Sbjct: 475 LTGSTKVSKRREIHAQLESGELPLLVGTHALIQDPVNFRNLGLVVIDEQHRFGVQQRARL 534

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K  APHVL MTATPIPRTL LT  GD+D+S+I E P GR+PI+T  +      +  + 
Sbjct: 535 LAKGQAPHVLTMTATPIPRTLALTIHGDLDVSQIDELPPGRQPIQTTALSGKERTQAYDL 594

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKES 532
           ++  +++G++AY I P IEE ++ + R+ VE +  L E       I ++HGRMS  +K+ 
Sbjct: 595 IRREVAQGRQAYVIFPLIEESEKLDVRAAVEEYKRLSETIFPDFQIGLLHGRMSSSEKDE 654

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            +++F++   +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   S C
Sbjct: 655 ALNAFRDNKTQIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGSHKSYC 714

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +L+     + +++ RL VL+ ++DGF I+E DL+ R  GE+LG +Q+G+P F +A     
Sbjct: 715 LLM-SSSRTPDAHQRLKVLEQSQDGFFISEMDLRFRGPGEVLGTRQTGLPDFALASLVED 773

Query: 653 DSLLEIARKDAKHILTQDPDLTSV 676
             +L IAR+ A+ I+  D  L ++
Sbjct: 774 QEVLNIARQAAERIMMADSSLKTM 797


>gi|300310559|ref|YP_003774651.1| TP-dependent DNA helicase RecG protein [Herbaspirillum seropedicae
           SmR1]
 gi|300073344|gb|ADJ62743.1| TP-dependent DNA helicase RecG protein [Herbaspirillum seropedicae
           SmR1]
          Length = 722

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/665 (38%), Positives = 373/665 (56%), Gaps = 28/665 (4%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE--RIVTITGYISQHSSFQLQ 85
           +K+   G  N+   +DL+ + P  + D      I+E S    + V + G +S     Q +
Sbjct: 49  NKLAKLGLHND---MDLVLHLPLRYEDETSLMSIAEASMRGLQTVQVEGVVSS-CEVQFR 104

Query: 86  KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145
            RR   + + D +G++TL F        K +  EG ++ V G+++       MVHP Y  
Sbjct: 105 PRRQLIVTVGDDSGQLTLRFLNFYGSQTKQMA-EGTRLRVRGELRHGFFGAEMVHPSYKV 163

Query: 146 HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW---IEKDLLQKKSFPSI 202
            N       ++  VY    GLS    +K I  A+SRL    +W   +   +L   +  + 
Sbjct: 164 VNEGAPLPDVLTPVYPAGEGLSQAYLRKAIANAMSRL----DWSDTLPPSMLATLNLAAF 219

Query: 203 AEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258
             +  ++HNP    D     E + PA  R+ +DELLA Q++L   +   + +    + V 
Sbjct: 220 EPSVRLLHNPPPDVDEHALIEKSHPAWIRMKFDELLAQQLSLKRAQAARRAKSARALPVT 279

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G+I +++ R +PF  T +Q+  +++I  D+ Q   M R+LQGDVGSGKT+VA +A A A+
Sbjct: 280 GRITEELTRLLPFQLTGAQQRVLEEIRADLRQSFPMQRLLQGDVGSGKTVVAALAAAQAI 339

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           ++G QAV+MAP  ILA+QH+  I  + +   + V  ++G+  +  + +AL  I  G A +
Sbjct: 340 DSGCQAVLMAPTEILAEQHFRKIAAWMEPLDVGVAWLSGSQKKKEKTEALAHIESGAARL 399

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---------TAPHVLLMTAT 429
           +IGTHAL QD++Q+  L LVIVDEQHRFGV QRL L  K+           PH L+M+AT
Sbjct: 400 VIGTHALIQDTVQFENLGLVIVDEQHRFGVGQRLALRNKSFNPADHDSPAVPHQLMMSAT 459

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL +T   D+++S I E P GR PI T +I  NR DEVIER+     EGK+ YW+C
Sbjct: 460 PIPRTLAMTYYADLEVSVIDELPPGRSPIVTRVIDQNRRDEVIERVHAAALEGKQIYWVC 519

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P IEE +    ++  +   +L        I ++HGRM  ++K+ VM+ F  G   LL+AT
Sbjct: 520 PLIEESEALQLQTATDTHAALSAALPDLQIGLVHGRMKPVEKQMVMEGFSRGAIHLLVAT 579

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S C+LLY  PL   +  RL
Sbjct: 580 TVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSAASVCLLLYQGPLGGTAKQRL 639

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           + ++ T DGF IA  DL  R  GE LG +QSG      A       L+E AR  A+ +L 
Sbjct: 640 ATMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLATDQWLVEKARDTAQALLQ 699

Query: 669 QDPDL 673
             PD+
Sbjct: 700 HAPDI 704


>gi|258544403|ref|ZP_05704637.1| ATP-dependent DNA helicase RecG [Cardiobacterium hominis ATCC
           15826]
 gi|258520362|gb|EEV89221.1| ATP-dependent DNA helicase RecG [Cardiobacterium hominis ATCC
           15826]
          Length = 686

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 252/682 (36%), Positives = 375/682 (54%), Gaps = 25/682 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL  PLS     G K +  L++   CG   ET   DLL + P  + DR +   I+ + + 
Sbjct: 2   PLNQPLSAISSHGDKTAELLAR---CGV--ET-LRDLLTHLPLRYEDRSHITPIAALRDG 55

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V I G +  H+    +++R   + L D  G+   L ++      +  F  GR+    G
Sbjct: 56  ATVQIHGEVL-HADLIQRRKRMLHVTLRDAAGDYCKLVYFNFYPSQQKAFAPGRRGLFYG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA----VYSLPTGLSVDLFKKIIVEALSRLP 183
           K         + HP   +    D   P + A    VY    GL    +  +I  AL+   
Sbjct: 115 KAVWTMQGYQIHHPEVQW--LADGETPHLSAQLHPVYPTVKGLGQTRWHDLIRRALAH-- 170

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK--AKD--FEWTSPARERLAYDELLAGQIA 239
            LP+    D L    +  +  A   +H P +  A D   E   PAR RL  +EL+A Q++
Sbjct: 171 ALPQLPADDPLTAMGYCPLPAALTTLHQPDESTAPDALLERNHPARRRLIIEELIAHQLS 230

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +   R++ +++    +  E  + ++    +P++ T +Q     +I  D++Q   MLR++Q
Sbjct: 231 IQNARQRLREQRATALPAEPPLLREFRAALPYTLTAAQSRVCAEIAADLAQATPMLRLVQ 290

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL A   A+ AG QAV M P  +LA+QH   I++      + V ++T  M
Sbjct: 291 GDVGSGKTVVALSACLQAIAAGQQAVFMVPTELLAEQHAANIRRLLGALPVRVAVLTSKM 350

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
           P A +R  L+ IA G A +IIGTHA+FQ+ ++Y +L LV++DEQHRFGV QRL+L  K T
Sbjct: 351 PAADKRACLQAIADGSADLIIGTHAVFQEQVRYARLALVVIDEQHRFGVHQRLQLQDK-T 409

Query: 420 AP----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           AP    H L++TATPIPRTL ++  G++D S I   PAGR+PI+T ++   + D VI R+
Sbjct: 410 APGVSVHQLVLTATPIPRTLAMSHYGELDCSIIDALPAGRQPIQTSVVSNQKRDAVIARV 469

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
                 G++AYW+CP IEE       +       L        +A++HGRM++  +++ M
Sbjct: 470 GENCRAGRQAYWVCPLIEESDTLECENAEATAAQLQMMLPDIRVALLHGRMNNDQRQATM 529

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F  G  +LL+ATTVIEVG+DV +A+++IIENAE FGLAQLHQLRGRVGRG   S C+L
Sbjct: 530 SAFVAGEAQLLVATTVIEVGVDVANATLMIIENAERFGLAQLHQLRGRVGRGSAQSYCLL 589

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +Y PPL + +  RL +++ T DGF IAEEDL  R  GE+LG +Q+G   F +A+      
Sbjct: 590 MYQPPLGETAQRRLRIMRETTDGFRIAEEDLAIRGAGELLGTRQTGEASFRVARLPRDGD 649

Query: 655 LLEIARKDAKHILTQDPDLTSV 676
           LL    +  + +  + PD  +V
Sbjct: 650 LLAETERLTRTLRAEHPDYCAV 671


>gi|326571914|gb|EGE21919.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis BC8]
          Length = 698

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 254/676 (37%), Positives = 376/676 (55%), Gaps = 50/676 (7%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++   GVG+  +  L+++         R  D+L + P  + DR     I ++S      
Sbjct: 11  PVTALSGVGQALAGRLAEL------GIHRIFDMLLHLPRDYEDRSRVIAIKDVSHGMSAL 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G ++    +  + R    + L D TGEITL FF+    +L  +   G KITV G+IK 
Sbjct: 65  VAGVVT----WVEKNRTGLSVTLEDATGEITLRFFHTYPSLLTTMMV-GAKITVFGEIKV 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
            +    M HP Y    ++     L+  +Y    G++ +  ++++  AL+        +++
Sbjct: 120 SRYGTQMSHPDYHLTGTKKFESGLLP-IYPTIKGINQNKLRQLVRLALTA-------VQQ 171

Query: 192 DLLQKKS-----------FPSIAEAFNIIHNPRKAKDF-----------EWTSPARERLA 229
           D +   S              +  A   +H P    D            + T PA  R+ 
Sbjct: 172 DGIHGLSETQLKAAGVELTGDLLPALKAVHLPEIHADIFSQTALLAGLKDRTHPACRRII 231

Query: 230 YDELLAGQIALLLMRK---QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286
            +EL+A Q++ L  R    Q+K     PI+    +A++++  +PF  T +Q+  I + + 
Sbjct: 232 IEELVAHQVSFLFRRNHIYQYKAPKCDPIS---PLAKQLVAGLPFELTAAQKRVIDEAVS 288

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           DM+    MLR++QGDVG+GKTLVA +    A+++G Q  +MAP  ILA+QH    +K+ +
Sbjct: 289 DMATSRPMLRLIQGDVGAGKTLVAAMTACYALDSGWQVAVMAPTEILAEQHLINFQKWFE 348

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              I V  + G      R  AL+ I   Q  I++GTHALF D++ + KL LVI+DEQHRF
Sbjct: 349 PLGIGVGWLAGKQTAKERTAALDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQHRF 408

Query: 407 GVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           GV+QRL+LT K     APH L MTATPIPRTL ++  GD+D+S I E P  R PI TV I
Sbjct: 409 GVEQRLRLTNKGVSGGAPHQLAMTATPIPRTLAMSMYGDMDVSIIDELPPKRTPITTVTI 468

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             +R DEVIER++     GK+AYW+CP +EE    + +S    +  L +       +IHG
Sbjct: 469 NRDRRDEVIERIQNNCQAGKQAYWVCPLVEESSALDVQSAQLTYEDLSDRLDIRTGLIHG 528

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M   DK++VM +FK G   LLIATTVIEVG+DV +AS+++IENAE  GL+QLHQLRGRV
Sbjct: 529 KMKAADKQAVMQAFKAGDIDLLIATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRV 588

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG   S C+LLY  PLS     RL+VLK++ DGF+IA++DL+ R  GE+LG +Q+G   
Sbjct: 589 GRGSAKSFCVLLYQLPLSPTGIERLNVLKDSTDGFVIAQKDLELRGAGELLGKRQTGDMG 648

Query: 644 FLIAQPELHDSLLEIA 659
           + +A     ++LLE A
Sbjct: 649 YYLADIVRDEALLEAA 664


>gi|307610762|emb|CBX00373.1| ATP-dependent DNA helicase RecG [Legionella pneumophila 130b]
          Length = 660

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/642 (37%), Positives = 375/642 (58%), Gaps = 24/642 (3%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITL 103
           +LF+ P  + DR     I ++       I G++ + +  +  KR      + D TG + L
Sbjct: 1   MLFHLPYKYQDRTRITPIQDLRSNEWCVIAGHVCK-TEIKYGKRMMLNCYVEDKTGVVKL 59

Query: 104 LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VY 160
            FF+   + ++        I   G+++   N++ M+HP Y   + Q+ +F + E    +Y
Sbjct: 60  RFFHFNKQQIQ-ALNNSAMIRAFGEVRGFNNQLEMIHPEYQLID-QESDFHVEETLTPIY 117

Query: 161 SLPTGLSVDLFKKIIVEALSR----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
               GL+    ++++  AL +    L  L EW+ +  LQ+ +F  + EA  ++HNP    
Sbjct: 118 PSTQGLTQTRLRQLVKIALEQSEHELHQL-EWMSEKQLQENNFYDLGEAIKLLHNP--PP 174

Query: 217 DFEWTS------PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
           D   ++      PA +RL +DELLA Q+++   R+   K     I  +  I ++ + ++P
Sbjct: 175 DISLSNLEAGEHPALKRLIFDELLAQQLSMQFARQSRSKLQAPAIFFDNAIHKRFIESLP 234

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           FS T +Q+   K+I  D++Q   MLR+LQGDVG+GKT++A +A   A+  G Q   MAP 
Sbjct: 235 FSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVGAGKTIIAALAALQAISQGFQVAFMAPT 294

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L++QH   + K+ +   I V  ++G M    R+  L  +      +I+GTHALFQ+ +
Sbjct: 295 DLLSEQHTNSLGKWLEPIGINVLRLSGKMKTTERKNTLAALQDNSCQLIVGTHALFQEQV 354

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDIS 446
           ++ +L LVI+DEQHRFGV+QRL L QK       PH LLMTATPIPRTL ++    +DIS
Sbjct: 355 EFARLGLVIIDEQHRFGVEQRLLLQQKGQLNQLIPHQLLMTATPIPRTLSMSHFAHLDIS 414

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I E P GR PI T ++  ++ + +IERL+  ++ GK+AYW+C  IEE ++    +  + 
Sbjct: 415 VIDELPPGRMPITTAVLNQDKRELIIERLQAAIANGKQAYWVCTLIEESEKLQCMAATDT 474

Query: 507 FNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              L E  + + + ++HGRM  ++KE+ M +FK G   LL+ATTVIEVG+DV +AS++II
Sbjct: 475 SKKLQEQLSFARVGLVHGRMKALEKEATMAAFKQGEIDLLVATTVIEVGVDVPNASLMII 534

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           ENAE  GL+QLHQLRGRVGRG   S C+LLY  PLS+    RL ++++T DGFLI+E+DL
Sbjct: 535 ENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSPLSQQGTERLKIMRSTTDGFLISEKDL 594

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           + R  GEILG +Q+G  +F IA  +   +L  I R  AK ++
Sbjct: 595 ELRGSGEILGTRQTGFRQFKIANLQRDKTLFAILRPIAKQLV 636


>gi|85060202|ref|YP_455904.1| ATP-dependent DNA helicase RecG [Sodalis glossinidius str.
           'morsitans']
 gi|84780722|dbj|BAE75499.1| ATP-dependent DNA helicase [Sodalis glossinidius str. 'morsitans']
          Length = 694

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 251/675 (37%), Positives = 380/675 (56%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG      +SK    G  N     DLL + P+ + DR     I E      VT
Sbjct: 11  PLNTLSGVGPS---LVSKFARLGLEN---LQDLLLHLPARYEDRTKLYPIGEALPGMTVT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  +S     ++      L D +G +TL FF+    M KN    G+ +T  G+I++
Sbjct: 65  VQGEVL-NSDISFGRKCMLTCRLRDDSGVLTLRFFHFNAAM-KNSLSPGQWVTAYGEIRR 122

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            ++   ++HP Y  I   S+      +  VY    G+     +  + +AL  L + P  E
Sbjct: 123 GQHGGEIIHPEYHVINERSEVTLAAALTPVYPTTEGVRQATLRNAVDQALKLLDITPVAE 182

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            +  +L       S+ +A  ++H P  A   +       PA+ RL  +ELLA  +++L +
Sbjct: 183 LLPPEL--SDGLMSLPDALRMLHRPPPAISLDDLVLGRHPAQRRLILEELLAHNLSMLAI 240

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   +K+  +P+  +  ++Q+ L  +PF+PT +Q   + +I QD+++   M+R++QGDVG
Sbjct: 241 RAGVQKDRALPLRADSLLSQRFLAALPFAPTGAQRRVVAEINQDLARDVPMMRLVQGDVG 300

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTL A +A   A+  G Q  +MAP  +LA+QH +  + +     I V  + G      
Sbjct: 301 SGKTLAAALAALCAISDGRQVALMAPTELLAEQHAQNFRDWFAPLGIEVGWLAGKQKGKA 360

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R+   E I+ G+  +I+GTHA+FQ+ +++  L LVI+DEQHRFGV QRL L +K      
Sbjct: 361 RQAQQEAISDGRVSMIVGTHAIFQEQVRFAGLALVIIDEQHRFGVHQRLALWEKGLVQGF 420

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++   
Sbjct: 421 HPHQLIMTATPIPRTLAMTTYADLDTSVIDELPPGRTPVTTVAIPDTRRAEIIQRVRQAC 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L E ++AYW+C  IEE      ++    +  L        + ++HGRM  ++K+ +M +F
Sbjct: 481 LQEQRQAYWVCTLIEESDLLEAQAAEATWQELKSSLPELRVGLVHGRMKALEKQQLMQAF 540

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 541 KAGDVQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 600

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK + +RL VL+N+ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A       ++ 
Sbjct: 601 SPLSKTAQSRLQVLRNSNDGFVIAQRDLEIRGPGELLGTRQTGNAEFRVANLLRDQGMIP 660

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI    PD
Sbjct: 661 EVQRLARHIHQHHPD 675


>gi|127514435|ref|YP_001095632.1| ATP-dependent DNA helicase RecG [Shewanella loihica PV-4]
 gi|126639730|gb|ABO25373.1| ATP-dependent DNA helicase RecG [Shewanella loihica PV-4]
          Length = 691

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 263/701 (37%), Positives = 408/701 (58%), Gaps = 38/701 (5%)

Query: 13  LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           ++  +GV  K +  L K+ IN          DLLF+ P  + DR     I+ +      T
Sbjct: 9   VTELKGVAAKMAQRLEKLGINT-------VQDLLFHLPLRYEDRTQIYPIAALYPGSYGT 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +     ++R     + D +G ITL FF     M +N   EG +I   G++++
Sbjct: 62  IEGII-QSTQIVQGRKRMLTCTVRDDSGTITLRFFNFSAAM-RNGLEEGERIRAYGEVRR 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL------ 182
            K    ++HP Y   N +  +F L   +  +Y    GL    + ++  +AL+ L      
Sbjct: 120 GKLHREIIHPEYKMLNGES-DFSLSDTLTPIYPTTEGLKQASWIRLTDQALALLAHGALT 178

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNP-RKAKDF---EWTSPARERLAYDELLAGQI 238
            +LP  +  + L      S+ +A  ++H P  +   F   + T PA++RL  +ELLA  +
Sbjct: 179 ELLPPQLRPNQL------SLVDALQLLHRPPSEVSPFALEQGTHPAQQRLIQEELLAHNL 232

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           ++L +R +   +  I +   G++    L ++PF PT +Q+  + DI QD+ + + M+R++
Sbjct: 233 SMLQLRARSNHDKAIAMQPTGQLLNPFLASLPFKPTGAQQRVVADITQDLDKAHPMMRLV 292

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A+E+G Q  +MAP  +LA+QH      + ++  + V  + G 
Sbjct: 293 QGDVGSGKTLVAALAALQAIESGYQVAMMAPTELLAEQHANNFAAWFEHLGLTVGWLAGK 352

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    R ++L++I  G+AHI+IGTHA+FQ+ +++ +L L+I+DEQHRFGV QRL L +K 
Sbjct: 353 LKGKARAQSLQQIKSGEAHIVIGTHAIFQEQVEFNRLALIIIDEQHRFGVHQRLGLREKG 412

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                 PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  NR  EVI+R
Sbjct: 413 IRQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAISDNRRGEVIDR 472

Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           ++   L +G++AYW+C  IEE +    ++  +    L +     +I ++HGRM   +K++
Sbjct: 473 VRQAALQDGRQAYWVCTLIEESEVLECQAAEDTAEELKQLLPELAIGLVHGRMKPAEKQA 532

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +MD+FK G+ +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C
Sbjct: 533 IMDAFKAGSIQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHC 592

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY  PLS  +  RL VL+++ DGF+IA++DL+ R  GE+LG KQ+G+    IA     
Sbjct: 593 VLLYKAPLSHTATQRLGVLRDSNDGFVIAQKDLEIRGPGEVLGTKQTGIADMKIADLVRD 652

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            +L+   +K A+H++ + P+  +V    +R L    QY +A
Sbjct: 653 QALIPHIQKLAQHVMQEVPE--NVDAIVLRWLGERQQYVQA 691


>gi|34581468|ref|ZP_00142948.1| ATP-dependent DNA helicase RecG [Rickettsia sibirica 246]
 gi|28262853|gb|EAA26357.1| ATP-dependent DNA helicase RecG [Rickettsia sibirica 246]
          Length = 713

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/640 (39%), Positives = 370/640 (57%), Gaps = 45/640 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLFY P S+ ++   P ++E+ +  I+  T  + +  +   +  +P KI  ++ TG + 
Sbjct: 37  DLLFYLPVSYQNKILSPNLTEVRDGDIIQ-TEIVVESINLPKKSSQPLKITASNDTGSLL 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159
           L+FF++    + N    G    ++GK++   + + + HP +I      VN  L   IE +
Sbjct: 96  LVFFHKPPPFIFNKLQVGTSHIISGKVQFFDHYLQIAHPEFI------VNPKLAKEIEPI 149

Query: 160 YSLPTGLS-----------VDLFKK---------------IIVEALSRLPVLPEWIEKDL 193
           YSL   LS           +++F++               II++ L  L V     E  +
Sbjct: 150 YSLTYLLSNKQLYSYIIKAIEIFEEKCKSIEDKEVKDYLDIILQNLQMLHVFHHCEEVCM 209

Query: 194 LQKKSFPSIAEAFNIIHNPRKA-KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
             K+S  ++    + +  P K  ++ +  + A+++LA  EL+A QI+LL +R Q  +  G
Sbjct: 210 PTKQS-SNVKLINSRLPQPLKGLRNDDLYTNAKKQLAAKELIANQISLLNVRTQISRRQG 268

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
                   I   IL  + F  T  Q+  I++I  D S K  M+R+LQGDVGSGKTLVAL+
Sbjct: 269 NIYPKAVSIQANILNELGFELTSYQKQVIEEIECDQSDKIEMMRLLQGDVGSGKTLVALL 328

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M   V  G QA +MAP  +LA QHYEF  K  +NT I V ++TG +    R+  + ++ 
Sbjct: 329 TMVNVVATGFQATLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGTARKNIMIQLD 388

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           + +  I++GTHALFQ+ + + KL  +++DEQHRFGVQQRL L  K   P VL+MTATPIP
Sbjct: 389 NDEIDILVGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPIP 448

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R+L LT  GD+ ISK+  KP  R PI T  + +N+I+ +I  +   L  G++ YWICP I
Sbjct: 449 RSLALTMFGDMTISKLMGKPKSRLPIATNTMSVNKIEHIIVAINKKLIAGERVYWICPLI 508

Query: 493 EE------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E+      +++S    V+ RFNS+   +     IIHG+M +  K+ +M  FK G  K+L+
Sbjct: 509 EQGEKETSEEDSLLMDVMNRFNSIDNIYQGYTGIIHGKMKNEQKDQIMKQFKEGEIKILV 568

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSY 605
           ATTVIEVGID+ +A++IIIENAE FGLAQLHQLRGRVGRG   S CILLY+P  L K + 
Sbjct: 569 ATTVIEVGIDIPEATLIIIENAEQFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLRKVAR 628

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
            R  ++K T DGF IAE+DLK R  GEILG+KQSG   F 
Sbjct: 629 GRFEIMKQTNDGFYIAEQDLKLRGSGEILGVKQSGEIAFF 668


>gi|271502623|ref|YP_003335649.1| ATP-dependent DNA helicase RecG [Dickeya dadantii Ech586]
 gi|270346178|gb|ACZ78943.1| ATP-dependent DNA helicase RecG [Dickeya dadantii Ech586]
          Length = 693

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/675 (37%), Positives = 389/675 (57%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST  GVG   +  L+++       ET   DLL + P  + DR +   I+++      T
Sbjct: 10  PLSTLAGVGASQAEKLARL-----GLET-VQDLLLHLPLRYEDRTHLYHINDLLPGMYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + S     +RR     ++DG+G +TL FF     M KN    G+++   G+I++
Sbjct: 64  VEGDVLR-SDITFGQRRMLTCQISDGSGMLTLRFFNFNAAM-KNSLSPGQRVLAYGEIRR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            K    M+HP Y +   S  V     +  VY    G+     +K+  +AL  L   P  E
Sbjct: 122 GKLGGEMIHPEYRVQGESATVELQETLTPVYPTTEGVRQATLRKLTDQALKLLDTHPIDE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + +++  +    S+ +A   +H P    + A+  +   PA++RL  +ELLA  +++L +
Sbjct: 182 LLPQEM--RHGLISLPDALRTLHRPPPDVKLAELEQGKHPAQQRLVMEELLAHHLSMLAV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   ++   + ++ +  + Q++L  +PFSPT +Q+  + +I QDM+Q   M+R++QGDVG
Sbjct: 240 RAGAQRHRALALDTKDDLKQQLLAALPFSPTGAQQRVVAEIEQDMNQPFPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   I V  + G      
Sbjct: 300 SGKTLVAALAALRAIAHGKQVALMAPTELLAEQHAANFRRWFEPLGIEVGWLAGKQKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R+   E IA GQ  ++IGTHA+FQ  +Q+  L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RQAQQEAIASGQVSMVIGTHAIFQQQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQGF 419

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++IER++   
Sbjct: 420 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRADIIERVRHAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L EG++AYW+C  IEE +    ++       L       ++ ++HGRM   +K++VM++F
Sbjct: 480 LQEGRQAYWVCTLIEESELLEAQAAEATCQELKAALPELTVGLVHGRMKAQEKQAVMEAF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 540 KTNQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G   F +A      +L+ 
Sbjct: 600 SPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAAFKVADLLRDQALIP 659

Query: 658 IARKDAKHILTQDPD 672
             ++ ++HI    P+
Sbjct: 660 QVQRVSRHIHEHYPE 674


>gi|120597135|ref|YP_961709.1| ATP-dependent DNA helicase RecG [Shewanella sp. W3-18-1]
 gi|120557228|gb|ABM23155.1| ATP-dependent DNA helicase RecG [Shewanella sp. W3-18-1]
          Length = 696

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/680 (37%), Positives = 390/680 (57%), Gaps = 30/680 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +S    
Sbjct: 11  LVPITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALSPGSY 64

Query: 70  VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            TI   I    S Q+ + R   ++ N  D TG ++L FF       +N    G  I   G
Sbjct: 65  GTIEAEIQ---STQIIQGRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYG 120

Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           ++++  ++  +VHP Y + +  +DV+    +  +Y    GL    + K+  +AL    +L
Sbjct: 121 EVRRGSHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALV---LL 177

Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQI 238
            E    +LL  +  P   S+ +A   +H P       D E    PA++RL  +ELLA  +
Sbjct: 178 KEGGLTELLPPQLQPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNL 237

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           ++L +R++   +  + +   G++    L  +PF PT +Q+  + DI +D+ + + M+R++
Sbjct: 238 SMLRLRQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLV 297

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G 
Sbjct: 298 QGDVGSGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGK 357

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    R ++L  I  G AH++IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +K 
Sbjct: 358 LKGKARTQSLADIESGAAHMVIGTHAIFQQHVVFNKLALIIIDEQHRFGVHQRLGLREKG 417

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R +EV+ER
Sbjct: 418 MSQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLER 477

Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           ++  V+++ ++AYW+C  IEE +    ++  +    L       +I ++HGR+   +K+ 
Sbjct: 478 VRNAVITDQRQAYWVCTLIEESEVLECQAAEDTAEELRLALPDLNIGLVHGRLKSAEKQQ 537

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M  FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C
Sbjct: 538 IMADFKAGMIHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIASHC 597

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY  PLS  +  RLSVL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA     
Sbjct: 598 VLLYKAPLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 657

Query: 653 DSLLEIARKDAKHILTQDPD 672
            +L+   +K A H++TQ P+
Sbjct: 658 QALIPHIQKLANHVMTQAPE 677


>gi|291619493|ref|YP_003522235.1| RecG [Pantoea ananatis LMG 20103]
 gi|291154523|gb|ADD79107.1| RecG [Pantoea ananatis LMG 20103]
 gi|327395802|dbj|BAK13224.1| ATP-dependent DNA helicase RecG [Pantoea ananatis AJ13355]
          Length = 692

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 253/675 (37%), Positives = 382/675 (56%), Gaps = 25/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST  GVG   +  L+KI            DLL + P  + DR     I+++      T
Sbjct: 10  PLSTLTGVGASQAAKLAKI------GLHTIQDLLLHLPLRYEDRTQLYAINDLLPGIWAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  H+     +RR     ++DG+G +++ FF     M KN    GR++T  G+IK+
Sbjct: 64  VEGDVL-HTEITFGRRRMMVCQISDGSGVLSMRFFNFNAGM-KNSLAPGRRVTAYGEIKR 121

Query: 132 LKNRIIMVHPHYIF---HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
            +    ++HP Y     H++  +   L   VY    G+     + +  +AL+ L   P  
Sbjct: 122 GQRGAEIIHPEYRVQGEHSTVTLEETLT-PVYPTTDGIRQATLRNLTDQALTLLENCP-- 178

Query: 189 IEKDLLQKKS--FPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLL 242
           I + L Q  S    S+ EA + +H P    K  + E    PA+ RL  +ELLA  +++L 
Sbjct: 179 ITELLPQALSGGLISLPEALHTLHRPPPDVKLSELESGHHPAQRRLILEELLAHNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   +P+     ++ ++L  +PFSPT +Q+  + +I +D++    MLR++QGDV
Sbjct: 239 VRAGAQRHYALPMPARHTLSDQLLAALPFSPTSAQKRVVAEIEKDLANDFPMLRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A    +  G Q  +MAP  +LA+QH    +++     + V  + G     
Sbjct: 299 GSGKTLVAALAALNVIAHGKQVAMMAPTELLAEQHAINFRQWLAPLGLEVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+   + IA G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARQAQQDAIASGSVAMVVGTHALFQEQVKFNGLALVIIDEQHRFGVHQRLALWEKGEEQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R  E+IER++  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDSRRSEIIERVQKA 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             EG++AYW+C  IEE      ++    +  L+       + ++HGRM   +K +VM +F
Sbjct: 479 CHEGRQAYWVCTLIEESDLLEAQAAEATWEELNVALPDLRVGLVHGRMKPAEKLAVMQAF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K    +LLIATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 539 KANEIQLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +++ 
Sbjct: 599 APLSKTAQKRLQVLRDSNDGFVIAQHDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI    P+
Sbjct: 659 EVQRVARHIHQHYPE 673


>gi|157964733|ref|YP_001499557.1| ATP-dependent DNA helicase RecG [Rickettsia massiliae MTU5]
 gi|157844509|gb|ABV85010.1| ATP-dependent DNA helicase RecG [Rickettsia massiliae MTU5]
          Length = 713

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/642 (39%), Positives = 371/642 (57%), Gaps = 45/642 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLFY P S+ ++   P ++E+ +  I+  T  + +  +   +  +P KI  ++ TG + 
Sbjct: 37  DLLFYLPVSYQNKILSPNLTEVRDGDIIQ-TEIVVESINLPKKSSQPLKITASNDTGSLL 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159
           L+FF++    + N    G    ++GK++   + + + HP +I      VN  L   IE +
Sbjct: 96  LVFFHKPPPFIFNKLQVGTSHIISGKVQFFDHYLQISHPEFI------VNPKLAKEIEPI 149

Query: 160 YSLPTGLS-----------VDLFKK---------------IIVEALSRLPVLPEWIEKDL 193
           YSL   LS           +++F++               II++ L  L V     E  +
Sbjct: 150 YSLTYLLSNKQLYSYIIKAIEIFEEKCKSIEDKEVKEYLDIILQNLQMLHVFRHCEEACM 209

Query: 194 LQKKSFPSIAEAFNIIHNPRKA-KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
             K+S  ++    + +  P K  ++ +  + A+++LA  EL+A QI+LL +R Q  +  G
Sbjct: 210 PTKQS-SNVKLINSRLPQPLKGLRNDDLYTNAKKQLAAKELIANQISLLNVRTQISRRQG 268

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
                   I   IL  + F  T  Q+  I++I  D S K  M+R+LQGDVGSGKTLVAL+
Sbjct: 269 NIYPKAVSIQANILNELGFELTSYQKQVIEEIECDQSDKIEMMRLLQGDVGSGKTLVALL 328

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M   V  G QA +MAP  +LA QHYEF  K  +NT I V ++TG +  A R+  + ++ 
Sbjct: 329 TMVNVVVTGFQATLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGAARKNIMIQLD 388

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           + +  I++GTHALFQ+ + + KL  +++DEQHRFGVQQRL L  K   P VL+MTATPIP
Sbjct: 389 NDEIDILVGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPIP 448

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R+L LT  GD+ ISK+  KP  R PI T  + +N+I+ +I  +   L  G++ YWICP I
Sbjct: 449 RSLALTMFGDMTISKLMGKPKSRLPIATNTMSVNKIEHIIAAINKKLIAGERVYWICPLI 508

Query: 493 EE------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E+      +++S    V+ RFNS+   +     IIHG+M +  K+ +M  FK G  K+L+
Sbjct: 509 EQGEKETPEEDSLLMDVMNRFNSIDNIYQGYTGIIHGKMKNEQKDQIMKQFKEGEIKILV 568

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSY 605
           ATTVIEVGID+  A++IIIENAE FGLAQLHQLRGRVGR    S CILLY+P  L K + 
Sbjct: 569 ATTVIEVGIDIPAATLIIIENAEQFGLAQLHQLRGRVGRSSLQSYCILLYNPKRLRKVAR 628

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
            R  ++K T DGF IAE+DLK R  GEILG+KQSG  +F  A
Sbjct: 629 GRFEIMKRTNDGFYIAEQDLKLRGSGEILGVKQSGEIEFFFA 670


>gi|284008962|emb|CBA75848.1| ATP-dependent DNA helicase RecG [Arsenophonus nasoniae]
          Length = 720

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 260/691 (37%), Positives = 394/691 (57%), Gaps = 28/691 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRP 59
           MR   L+ +  PL++  GVG   +  L+KI         R I DLLF+ P  + D+    
Sbjct: 28  MRGKLLDAI--PLTSLNGVGASQAEKLNKI-------GLRTIQDLLFHLPLRYQDQTQLY 78

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
            I+++     VT++G I Q +     ++R     ++DG+G +TL FF   T M KN    
Sbjct: 79  TINDVQPGSTVTVSGKILQ-TKIIFGRKRMMICQISDGSGTLTLRFFNFSTAM-KNSLAA 136

Query: 120 GRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVE 177
           G+ I   G+I++      ++HP Y I  ++  +     +  +Y +  G+     +K+I +
Sbjct: 137 GKYIVAYGEIRRGNLGPEIIHPEYKIKPDADQIELQDTLTPIYPITEGIRQITLRKLIDQ 196

Query: 178 ALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYD 231
           AL+ L    + E I     Q     S+ +A  I+H P          +   PA+ RL ++
Sbjct: 197 ALTLLDSCAISELIPAPFNQ--GLISLPQAIKILHRPPPDIPLNILEKGKHPAQRRLIFE 254

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           ELLA Q+++L +R + ++    P+  E K+ Q++L  +P+SPTK+Q+  + +I  D+++ 
Sbjct: 255 ELLAHQLSMLTVRSETQQFSAQPLPAEEKLKQQLLTRLPYSPTKAQQRVVSEIEADLAKA 314

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
           + M+R++QGDVGSGKTLVAL A   A+  G QA +MAP  +LA+QH    +++ +   I 
Sbjct: 315 SPMMRLVQGDVGSGKTLVALFAAIRAIAHGKQAALMAPTELLAEQHANTFRQWLEPLGIQ 374

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V  ++G      R    E IA G+  +IIGTHA+FQ  +++  L LVI+DEQHRFGV QR
Sbjct: 375 VGWLSGKQKGKSRLNQQEAIAKGKVAMIIGTHAIFQQQVEFNALALVIIDEQHRFGVHQR 434

Query: 412 LKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           L L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R
Sbjct: 435 LALWEKGQQHGIYPHQLIMTATPIPRTLAMTAYADLDNSIIDELPPGRTPVTTVAIPDTR 494

Query: 468 IDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            +EVI+R+K     E ++ YW+C  I++ +    ++       L       +I ++HGRM
Sbjct: 495 RNEVIQRVKKACQIEKRQVYWVCTLIDDSEVLEAQAAQATQEELARALPELNIGLVHGRM 554

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +K+ VM  F     +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGR
Sbjct: 555 KSAEKQKVMADFSANKLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGR 614

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
           G   S C+LLY  PL+  +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F 
Sbjct: 615 GSIASHCVLLYKTPLTYTTKLRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFK 674

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           +A       LL   R  A+H+    P+ T+ 
Sbjct: 675 VADLMRDQDLLPEIRNAAQHLQQHYPNHTNA 705


>gi|307314263|ref|ZP_07593871.1| ATP-dependent DNA helicase RecG [Escherichia coli W]
 gi|306906086|gb|EFN36605.1| ATP-dependent DNA helicase RecG [Escherichia coli W]
 gi|315062940|gb|ADT77267.1| ATP-dependent DNA helicase [Escherichia coli W]
 gi|323376467|gb|ADX48735.1| ATP-dependent DNA helicase RecG [Escherichia coli KO11]
          Length = 693

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 383/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+E G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIEHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM  ++K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPVEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|52425790|ref|YP_088927.1| RecG protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307842|gb|AAU38342.1| RecG protein [Mannheimia succiniciproducens MBEL55E]
          Length = 693

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 261/684 (38%), Positives = 390/684 (57%), Gaps = 34/684 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  LSKI   G  N     DLLF+ P  + DR     IS++  E+  T
Sbjct: 10  PLTSLSGVGAAVSAKLSKI---GINN---LQDLLFHLPIRYEDRTRITPISDLRPEQYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q    Q  +R    + L+DGT +I L FF     M +N F  G ++   G++K+
Sbjct: 64  IEG-IVQTCEIQFGRRPILTVSLSDGTSKIMLRFFNFNAGM-RNGFQPGARVKAFGEVKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLP------ 183
            +    + HP Y I  + Q +     +  +YS   GL  +  +K+  +AL  L       
Sbjct: 122 GRFMAEIHHPEYQIIRDKQPLQLEENLTPIYSATEGLKQNSLRKLTDQALELLDKIQIAE 181

Query: 184 VLPEWIEKDLLQKKSFP-SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQI 238
           +LP+       Q   +P S+ EA   +H P      E     T PA+ RL ++ELLA  +
Sbjct: 182 ILPD-------QFNPYPFSLKEAIRFLHRPPPDVSVESLEKGTHPAQVRLIFEELLAHNL 234

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           A+  +R   ++   +P++ +  + Q+ L  +PF PT +Q    +DI +D+++   M+R++
Sbjct: 235 AMQKVRLGTQQFQALPLHFQTDLKQRFLATLPFEPTNAQVRVTQDIERDLAKDYPMMRLV 294

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH E  +++ +   I V  + G 
Sbjct: 295 QGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHAENFRRWFEPFGIEVGWLAGK 354

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK- 417
           +    R+  LERI + +  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL L +K 
Sbjct: 355 VKGKARQSELERIKNAEVQMVVGTHALFQEEVAFSDLALVIIDEQHRFGVHQRLLLREKG 414

Query: 418 ---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                 PH L+MTATPIPRTL +T   D+D S I E P GR PIKT+++   R  E++ R
Sbjct: 415 EKAGNYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPIKTIVVSEERRAEIVAR 474

Query: 475 L-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           +     +E ++ YW+C  I+E +    ++       LH       I ++HGRM   +K++
Sbjct: 475 VHNACTNENRQVYWVCTLIDESEVLEAQAAEATAEDLHRALPHLRIGLVHGRMKPAEKQA 534

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M SFK     LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C
Sbjct: 535 IMASFKAAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFC 594

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +L+Y PPL K S  RL VL+ ++DGF+I+E+DL+ R  GE+LG KQ+G+ +F +A     
Sbjct: 595 VLMYKPPLGKISQKRLQVLRESQDGFVISEKDLEIRGPGEVLGTKQTGIAEFKVANLMRD 654

Query: 653 DSLLEIARKDAKHILTQDPDLTSV 676
             ++   +  A+ ++ + PD+   
Sbjct: 655 RKMIPTVQHYARRLIVEYPDVADT 678


>gi|332159668|ref|YP_004296245.1| ATP-dependent DNA helicase RecG [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325663898|gb|ADZ40542.1| ATP-dependent DNA helicase RecG [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860933|emb|CBX71211.1| ATP-dependent DNA helicase recG [Yersinia enterocolitica W22703]
          Length = 693

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 391/676 (57%), Gaps = 26/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS   GVG   +  L+K+       ET   DLL + P  + DR    +I ++     VT
Sbjct: 10  PLSKLSGVGASQAGKLAKM-----GLET-IQDLLLHLPLRYEDRTRLYRIGDLLPGLSVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + S     +RR     ++DG+G +TL FF     M KN    G+ +   G+ K+
Sbjct: 64  VEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
                 ++HP Y  H  +++   L E+   VY    G+   + +K+I +AL+ L   V+ 
Sbjct: 122 GNTGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQAILRKLIDQALAMLDSSVIT 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242
           E +  +L   +S  S+ EA + +H P    +  D E    PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPIEL--SRSLISLPEAIHTLHRPPADIQLADLEQGKHPAQRRLIMEELLAHNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   +    +P+  E ++ ++ L  +PF+PT +Q+  + +I QDM+    M+R++QGDV
Sbjct: 239 VRAGAQSYRALPLLPEEQLKRRFLAALPFTPTHAQQRVVAEIEQDMTHNFPMMRLIQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V  + G     
Sbjct: 299 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLEPLGLEVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R    E +A GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARLAQQEAVASGQVSMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  +VI+R+K  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L EG++AYW+C  IEE +    ++       L        + ++HGRM   +K++VM +
Sbjct: 479 CLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAVMLA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +++
Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMI 658

Query: 657 EIARKDAKHILTQDPD 672
              ++ A+H+  Q P+
Sbjct: 659 PKVQRVARHLHQQYPE 674


>gi|239947193|ref|ZP_04698946.1| type III restriction enzyme, res subunit family [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239921469|gb|EER21493.1| type III restriction enzyme, res subunit family [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 746

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 257/672 (38%), Positives = 370/672 (55%), Gaps = 76/672 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLFY P S+ ++   P ++E+ +  I+  T  + +  +   +  +P KI  ++ TG + 
Sbjct: 37  DLLFYLPVSYQNKILSPNLTEVRDGEIIQ-TEIVIESINLPKKSHQPLKITASNDTGSLL 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
           L+FF++    + N    G    ++GK++   + + + HP +I +         IE +YSL
Sbjct: 96  LVFFHKPHPFIFNKLKIGTSHIISGKVQFFDHYLQIPHPEFITNPKLAKE---IEPIYSL 152

Query: 163 PTGLS-----------VDLFKK---------------IIVEALSRL----PVLPEWIEKD 192
              LS           +++F++               II++ L  L     V+P W++  
Sbjct: 153 TYLLSNKQLYSYIIKAIEIFEEKCKSIEDKEVKDYLDIILQNLKMLHVSEAVIP-WLDHG 211

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
           +      P  +       N  K  D   T  A+++LA  EL+A QI+LL +R Q  +  G
Sbjct: 212 IHNNNWIPWSSHGMTTPSNTIKLWDD--TESAKKQLAAKELIANQISLLNVRTQISRRQG 269

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
                   I   IL  + F  T  Q+  I++I  D S K  M+R+LQGDVGSGKTLVAL+
Sbjct: 270 NIYPKAAAIQANILNELGFELTSYQKQVIEEIEFDQSDKGEMMRLLQGDVGSGKTLVALL 329

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M   V+AG QA +MAP  +LA QHYEF  K  +NT I V ++TG +  + R+  + ++ 
Sbjct: 330 TMVNTVKAGFQATLMAPTDLLANQHYEFFVKALKNTDIRVALLTGKILGSVRKNIMLQLE 389

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            G+  I++GTHALFQ+ + + KL  +++DEQHRFGVQQRL L  K   P VL++TATPIP
Sbjct: 390 SGEIDILVGTHALFQEKVSFNKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVITATPIP 449

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R+L LT  GD+ ISK+  KP  R PI T  + +N+I+ +IE +   L  G++ YWICP I
Sbjct: 450 RSLALTMFGDMSISKLMGKPKNRLPIATNTMSVNKIEHIIEAINKKLVVGERVYWICPLI 509

Query: 493 --------------------------------------EEKKESNFRSVVERFNSLHEHF 514
                                                 EE+++S    V+ RFNS+   +
Sbjct: 510 EHGKPPVVIPRLDCGIQKTTYNASNFDWIPLQARGMTPEEEEDSLLMDVMNRFNSIENIY 569

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                IIHG+M +  ++ +M  FK G  K+L+ATTVIEVGIDV +A++IIIENAE FGLA
Sbjct: 570 QGYTGIIHGKMKNEQRDQIMKQFKEGEIKILVATTVIEVGIDVPEATLIIIENAEQFGLA 629

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           QLHQLRGRVGRG   S CILLY+P  L K +  R  ++K T DGF IAE+DLK R  GEI
Sbjct: 630 QLHQLRGRVGRGSLQSYCILLYNPKRLGKVARGRFEIMKQTNDGFYIAEQDLKLRGSGEI 689

Query: 634 LGIKQSGMPKFL 645
           LG+KQSG  +F 
Sbjct: 690 LGVKQSGEIEFF 701


>gi|288572872|ref|ZP_06391229.1| ATP-dependent DNA helicase RecG [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288568613|gb|EFC90170.1| ATP-dependent DNA helicase RecG [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 687

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/641 (38%), Positives = 373/641 (58%), Gaps = 13/641 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIV-TITGYISQHSSFQLQKR-RPYKILLNDGTGE 100
           DLLF+ P  + DR     + ++  + +  +I   +S  S   ++KR    + +++DG G 
Sbjct: 32  DLLFFFPRRYEDRRRIVSLKDLQADTVAASIVTVVSTDSRLSVKKRISLTRAIVSDGHGL 91

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL--IEA 158
            + L+F RK   L  +   G ++ + GK+ K       V P +      +V   +  I A
Sbjct: 92  ASALWFNRKG--LDRLLTSGTRLALYGKVAKEGGMAQFVAPEFEILGEDEVPVQIGGIVA 149

Query: 159 VYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VYSL  GLS    +KII   L + LP L + + + LL+      +  A   +H P   + 
Sbjct: 150 VYSLTAGLSDRWLRKIIHRLLDQVLPELEDHMPESLLRDLDLEPLGPAIREMHCPVSPES 209

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKS 276
           ++    AR RLA+DEL   Q+ L + R+   +  G P + + G + +KI  ++PF  T+ 
Sbjct: 210 WK---RARRRLAFDELFMLQVGLAIRRRSVGELRGAPRLPLGGPLRRKIEHSLPFELTED 266

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   + +I +DMS    M R+LQGDVGSGKT VA +AM  AV+ G QA +M P  ILAQQ
Sbjct: 267 QSRVLAEIGRDMSSDVTMNRLLQGDVGSGKTAVATLAMMQAVDGGTQAALMVPTSILAQQ 326

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H   ++ + +   + V ++TG +    R+  L+ IA G   ++IGTHA+ Q+ + + +L 
Sbjct: 327 HAIRLRSFLEPHGVKVGLLTGGLSAKERKALLKEIAEGSIDLVIGTHAVIQEDVVFRRLG 386

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+++DEQHRFGV QR  L  K   PHVL+MTATPIPRTL L+  GD+ +S I   P GR 
Sbjct: 387 LIVIDEQHRFGVLQRGALGGKGEMPHVLVMTATPIPRTLALSVYGDLSVSVIRTMPEGRI 446

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           P+KT  I  +++D++   L   +  G++ +W+CP IEE +  N R + ERF+ L   F S
Sbjct: 447 PVKTRWIGDHKVDDLYGFLDSEMDRGRRIFWVCPLIEESEHLNARPLEERFDFLVRRFGS 506

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             ++++HGRMS  ++ SVM+ F +G   LL +TTVIEVG+DV +A++++IE AE FGL+Q
Sbjct: 507 ERVSMLHGRMSMEERRSVMEEFASGESPLLASTTVIEVGVDVPEATVMVIEGAERFGLSQ 566

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGR +E S C LL  P  +++   RL  + ++ DGF +AE D+  R  GEI G
Sbjct: 567 LHQLRGRVGRSDEQSWCFLLGKPG-TQDGNRRLEAICSSSDGFEVAEADMAIRGPGEICG 625

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            +Q G+  F +A     + LL +AR+ A  ++ +DP+L S+
Sbjct: 626 TRQHGLTDFKVADLIRDEDLLTLARRIAIDMVGRDPNLDSI 666


>gi|119776507|ref|YP_929247.1| ATP-dependent DNA helicase RecG [Shewanella amazonensis SB2B]
 gi|119769007|gb|ABM01578.1| ATP-dependent DNA helicase RecG [Shewanella amazonensis SB2B]
          Length = 691

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 253/682 (37%), Positives = 387/682 (56%), Gaps = 34/682 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV  + +  LSK+      N  +  DLLF+ P  + DR     I E+     
Sbjct: 6   LVPVTELKGVAARVAEKLSKL----GVNTVQ--DLLFHLPLRYEDRTRIYAIDELIPGTT 59

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            TI   +   S     ++R     + D +G +TL FF       KN    G  I   G+I
Sbjct: 60  ATIEAEVIS-SQIVNGRKRMLTCNVRDASGGLTLRFFNFSMAQ-KNGLQPGMTIRAFGEI 117

Query: 130 KKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP---- 183
           +  K+++ ++HP Y    + +       +  +Y    GL    + ++  +AL +L     
Sbjct: 118 RTGKHQLEIIHPEYKLTAAGESPSLADTLTPIYPTTEGLKQASWIRLTAQALEQLEEGGL 177

Query: 184 --VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT-----SPARERLAYDELLAG 236
             +LPE ++ + L      S+A+A   +H P    +  W       PA++RL  +ELLA 
Sbjct: 178 PELLPESLQPNRL------SLADAVRTLHRPPADAEL-WQLEQGQHPAQQRLVQEELLAH 230

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            +++L +R++  ++   P+   G++  + L ++PF+PT +Q   + +I  DM++   M+R
Sbjct: 231 NLSMLKLRERSNQDAAEPLAATGQLIPRFLESLPFAPTNAQSRVVAEIHADMTKATPMMR 290

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVA ++  AA+E G Q  +MAP  +LA+QH     ++ +   + V  + 
Sbjct: 291 LVQGDVGSGKTLVAALSALAAIENGCQVALMAPTELLAEQHAANFARWFEPLGLKVGWLA 350

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G +    R + LE IA G A +I+GTHA+FQ+ + + +L L I+DEQHRFGV QRL L +
Sbjct: 351 GKLKGKARTQTLEDIASGAAQMIVGTHAIFQEQVSFSRLALTIIDEQHRFGVHQRLGLRE 410

Query: 417 KATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           K       PH L+MTATPIPRTL +T+  D+D S I E P GR PI TV IP  R  +VI
Sbjct: 411 KGIQQGFFPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPITTVAIPDTRRLDVI 470

Query: 473 ERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
           ER++   L + ++AYW+C  IEE +    ++  +    L E      I ++HGRM   +K
Sbjct: 471 ERVRQAALQDKRQAYWVCTLIEESEVLECQAAEDTAGGLKEALPELGIGLVHGRMKGAEK 530

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           +++M  FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S
Sbjct: 531 QAIMADFKAGKLDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVAS 590

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+LLY  PLS  +  RL VL+ + DGF+IA++DL+ R  GE+LG +Q+G+ +  +A   
Sbjct: 591 HCVLLYKAPLSFTAQARLGVLRESNDGFVIAQKDLELRGPGEVLGTRQTGLAQMKVADLV 650

Query: 651 LHDSLLEIARKDAKHILTQDPD 672
              +L+   +K A+H++TQ PD
Sbjct: 651 RDQALIPHIQKLARHLMTQAPD 672


>gi|15602784|ref|NP_245856.1| hypothetical protein PM0919 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|20139711|sp|Q9CMB4|RECG_PASMU RecName: Full=ATP-dependent DNA helicase recG
 gi|12721238|gb|AAK03003.1| RecG [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 693

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 260/679 (38%), Positives = 388/679 (57%), Gaps = 26/679 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   S  L +I   G  N     DLLF+ P  + DR     I ++  +   T
Sbjct: 10  PLTTLSGVGAAISDKLGRI---GIHN---LQDLLFHLPIRYEDRTRITPIHDLRPDAYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G + Q    Q  KR    + L+DGT +I L FF     M KN    G ++   G++K+
Sbjct: 64  IEGLV-QTCEVQFGKRPILNVSLSDGTSKIMLRFFNFNAGM-KNSLQPGARVKAFGEVKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y  I  N+  +    +  +YS   G+  +  +K+  +AL+   VL    
Sbjct: 122 GRFMAEIHHPEYQIIRDNAPLILEETLTPIYSTTEGIKQNSLRKLTDQALA---VLENIQ 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLL 242
             ++L  +  P   S+ EA   +H P      E     T PA++RL ++ELLA  +A+  
Sbjct: 179 IAEILPNEFNPHPFSLKEAIRFLHRPPPDVSLEALEKGTHPAQQRLIFEELLAHNLAMQK 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++    P++ +  + Q+ L  +PF+PT +Q    ++I QD++    M+R++QGDV
Sbjct: 239 VRIGTQQFSAYPLSYQTDLKQRFLAQLPFTPTDAQVRVTQEIEQDLTHPFPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ ++  I V  + G +   
Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHATNFRRWFESLGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  LE+I  GQ  +++GTHALFQD +++  L LVIVDEQHRFGV QRL L +K     
Sbjct: 359 ARQTELEKIRTGQVQMVVGTHALFQDEVEFSDLALVIVDEQHRFGVHQRLMLREKGKQAD 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I   R  EVI R+   
Sbjct: 419 HYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEERRAEVIARVNHA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            ++E ++AYW+C  I+E +    ++       L +      I ++HGRM   +K+ +M +
Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIAEDLRKILPHLRIGLVHGRMKPAEKQDIMQA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK     LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y
Sbjct: 539 FKQAEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGTTASFCVLMY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++T+DGF+I+E+DL+ R  GE+LG KQ+G+ +F +A       ++
Sbjct: 599 KPPLGKISQKRLQVLRDTQDGFVISEKDLEIRGPGEVLGTKQTGVAEFKVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLTS 675
              +  A+ ++ + P++ +
Sbjct: 659 PTVQYYARRLIVEQPEVAT 677


>gi|329296823|ref|ZP_08254159.1| ATP-dependent DNA helicase RecG [Plautia stali symbiont]
          Length = 692

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 248/678 (36%), Positives = 376/678 (55%), Gaps = 31/678 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST  GVG   +  L+K+            DLL + P  + DR    KI+++      T
Sbjct: 10  PLSTLTGVGASQASKLAKL------GLFTIQDLLLHLPLRYEDRTQLYKINDLLPGIWAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  HS     +RR     ++DG+G +T+ FF     M KN    GR++T  G+IK+
Sbjct: 64  VEGEVL-HSEITFGRRRMLVCQISDGSGVLTMRFFNFNACM-KNSLAPGRRVTAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNS------QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            +    ++HP Y           Q    P    VY    G+     + +  +AL+ L   
Sbjct: 122 GQRGAEIIHPEYRVQGELGGVELQKTLTP----VYPTTEGIRQATLRNLTDQALTLLESC 177

Query: 186 P--EWIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIA 239
           P  E +  +L       S+ EA   +H P    R ++      PA++RL  +ELLA  ++
Sbjct: 178 PIAELLPPEL--SGGLISLPEALRTLHRPPPDLRLSELETGRHPAQKRLILEELLAHNLS 235

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +L +R   ++   +P+    ++  K+L  +PFSPT +Q   + +I +D++    M+R++Q
Sbjct: 236 MLAVRAGAQRHHALPMPARHELVDKLLAALPFSPTAAQRRVVAEIERDLAHDFPMMRLVQ 295

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +A    +  G Q  +MAP  +LA+QH    +++     + V  + G  
Sbjct: 296 GDVGSGKTLVAALAALNVIAWGKQVTLMAPTELLAEQHASNFRQWFAPLGVEVGWLAGKQ 355

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            +  R    E IA GQ  +++GTHALFQ+ +++  + LVI+DEQHRFGV QRL L +K  
Sbjct: 356 KRKAREAQQEAIASGQVAMVVGTHALFQEQVKFNGMALVIIDEQHRFGVHQRLALWEKGE 415

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +T+  D++ S I E P GR P+ TV IP  R  ++I R+
Sbjct: 416 EQGFHPHQLIMTATPIPRTLAMTAYADLNTSTIDELPPGRTPVTTVAIPDTRRSDIITRV 475

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           +    EG++AYW+C  I+E      ++    +  L        + ++HGRM   +K++VM
Sbjct: 476 QSACHEGRQAYWVCTLIDESDVLEVQAAEATWQELKVALPDLQVGLVHGRMKPAEKQAVM 535

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +FK    +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGR    S C+L
Sbjct: 536 AAFKANEIQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRSAVASHCVL 595

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      S
Sbjct: 596 LYKAPLSKTAQKRLQVLRDSNDGFVIAQHDLEIRGPGELLGTRQTGNAEFKVADLLRDQS 655

Query: 655 LLEIARKDAKHILTQDPD 672
           ++   ++ A+HI    P+
Sbjct: 656 MIPEVQRVARHIHQHYPE 673


>gi|260599949|ref|YP_003212520.1| ATP-dependent DNA helicase RecG [Cronobacter turicensis z3032]
 gi|260219126|emb|CBA34481.1| ATP-dependent DNA helicase recG [Cronobacter turicensis z3032]
          Length = 693

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 261/688 (37%), Positives = 390/688 (56%), Gaps = 30/688 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR   L+ +  PLS+  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MRGRLLDAV--PLSSLTGVGASQSAKLAKI------GLHTIQDLLLHFPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+ G +  + +     RR     ++DGTG +T+ FF     M KN    G
Sbjct: 53  INDLLPGVYATVEGEVL-NCNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIV 176
           R++   G+ K+ K    M+HP Y      DV+ P ++     VY    G+     +K+  
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRIQG--DVSAPEMQETLTPVYPTTEGVRQATLRKLTD 168

Query: 177 EALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNP---RKAKDFE-WTSPARERLAY 230
           +AL  L    + E +  +L Q     S+ EA   +H P    K +D E    PA+ RL  
Sbjct: 169 QALELLETCAITELLPPELSQ--GLMSLPEALRTLHRPPPDMKLEDLESGQHPAQRRLIL 226

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           +ELLA  +++L +R   ++   + +    ++ +++L ++PF PT +Q   + +I +DM+ 
Sbjct: 227 EELLAHNLSMLALRAGAQRYHALSLAARDELKEQLLASLPFKPTGAQARVVAEIERDMAL 286

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I
Sbjct: 287 DIPMMRLVQGDVGSGKTLVAALAALRAIANGKQVALMAPTELLAEQHANNFRNWFSPLGI 346

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V  + G      R+   + IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV Q
Sbjct: 347 EVGWLAGKQKGKARQAQQDAIASGQVSMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQ 406

Query: 411 RLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           RL L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  
Sbjct: 407 RLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIYELPPGRTPVTTVAIPDT 466

Query: 467 RIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524
           R  ++IER++   L EG++AYW+C  IEE +    ++    +  L       ++ ++HGR
Sbjct: 467 RRSDIIERVRSACLEEGRQAYWVCTLIEESELLEAQAAEATWEELKITLPELNVGLVHGR 526

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVG
Sbjct: 527 MKPAEKQAVMQAFKQGEMHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVG 586

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RG   S C+LLY  PLS+ +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F
Sbjct: 587 RGAVASHCVLLYKSPLSRTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEF 646

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPD 672
            +A      SL+   ++ A+HI  + P+
Sbjct: 647 KVADLLRDQSLIPEVQRIARHIHERYPE 674


>gi|294638300|ref|ZP_06716553.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda ATCC 23685]
 gi|291088553|gb|EFE21114.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda ATCC 23685]
          Length = 693

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 253/675 (37%), Positives = 386/675 (57%), Gaps = 26/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   +  L+K+            DLL + P  + DR    +I E+   ++VT
Sbjct: 10  PLTSLSGVGASQAGKLAKL------GLVTIQDLLLHLPLRYEDRTRLYRIGELQPGQVVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G + + +     +RR     ++DG+G +TL FF     M KN    G+++   G+IK+
Sbjct: 64  IEGEVLR-TDVAFGRRRMLTSQISDGSGLLTLRFFNFSAAM-KNSLAPGKRVLAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPV--LP 186
             +   ++HP Y      D    L  A   VY    G+     +K+  +AL+ L +  +P
Sbjct: 122 GHHGGEIIHPEYRIQGD-DAPIELQAALTPVYPTTEGVRQATLRKLSDQALALLDITPIP 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLL 242
           E + + L Q     S+ EA + +H P    R     +   PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPESLGQ--GLISLPEALHTLHRPPADIRLEDLAQGRHPAQRRLILEELLAHHLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   +++  + +     + Q++L  +PF+PT +Q   + DI  DM++   M+R++QGDV
Sbjct: 239 VRAGNQRQHALALGANDNLKQRLLAALPFTPTAAQWRVLADIETDMAKSVPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G GKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G     
Sbjct: 299 GCGKTLVAAMAALRAIANGHQVALMAPTELLAEQHAANFRHWFEPLGLRVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  +  IA G+  +++GTHALFQ+ +Q+  L LVI+DEQHRFGV QRL L +K  A  
Sbjct: 359 ARQTQMAAIAAGEVDMVVGTHALFQEQVQFADLALVIIDEQHRFGVHQRLALWEKGQAQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I   R ++++ER++  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIADTRREQILERVRHA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+E ++AYW+C  IEE +    ++      +L +      IA++HGRM   DK+ VM  
Sbjct: 479 CLTEKRQAYWVCTLIEESEVLEAQAAEATAEALSQQLPELRIALVHGRMKAADKQQVMAR 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKAGEIDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLS+ +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +L+
Sbjct: 599 KAPLSQTAQQRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAEFRVADLLRDQALI 658

Query: 657 EIARKDAKHILTQDP 671
              ++ A+H+ +  P
Sbjct: 659 PEVQRIARHLHSAYP 673


>gi|251791703|ref|YP_003006424.1| ATP-dependent DNA helicase RecG [Dickeya zeae Ech1591]
 gi|247540324|gb|ACT08945.1| ATP-dependent DNA helicase RecG [Dickeya zeae Ech1591]
          Length = 693

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/675 (37%), Positives = 389/675 (57%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST  GVG   +  L+++       ET   DLL + P  + DR +   I+++      T
Sbjct: 10  PLSTLAGVGASQAEKLARL-----GLET-VQDLLLHLPLRYEDRTHLYLINDVLPGMYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + S     +RR     ++DG+G +TL FF     M KN    G+++   G+I++
Sbjct: 64  VEGEVLR-SDITFGQRRMLTCQISDGSGMLTLRFFNFNAAM-KNSLSPGQRVLAYGEIRR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            K    M+HP Y +   S  V     +  VY    G+     +K+  +AL  L   P  E
Sbjct: 122 GKLGGEMIHPEYRVQGESTTVELQETLTPVYPTTEGVRQATLRKLTDQALKLLDTHPIDE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + +++  +    S+ +A   +H P    + A+  +   PA++RL  +ELLA  +++L +
Sbjct: 182 LLPQEM--RHGLISLPDALRTLHRPPPDVKLAELEQGKHPAQQRLVMEELLAHHLSMLAV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   ++   + ++ +  + Q++L  +PFSPT +Q   + +I QDM++   M+R++QGDVG
Sbjct: 240 RAGAQRHRALALDTKDSLKQQLLAALPFSPTGAQHRVVAEIEQDMNKPFPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   I V  + G      
Sbjct: 300 SGKTLVAALAALRAIAHGKQVALMAPTELLAEQHAANFRRWFEPLGIEVGWLAGKQKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R+   E IA GQ  +++GTHA+FQ  +Q+  L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RQAQQEAIASGQVAMVVGTHAIFQQQVQFNGLALVIIDEQHRFGVHQRLALWEKGEEQGF 419

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R D++I+R++   
Sbjct: 420 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRDDIIQRVRNAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L EG++AYW+C  IEE +    ++       L       ++ ++HGRM   +K++VM++F
Sbjct: 480 LQEGRQAYWVCTLIEESELLEAQAAEATCQELKAALPELAVGLVHGRMKAQEKQAVMEAF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 540 KTNQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G   F +A      +L+ 
Sbjct: 600 SPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAAFKVADLLRDQALIP 659

Query: 658 IARKDAKHILTQDPD 672
             ++ ++HI    P+
Sbjct: 660 QVQRVSRHIHEHYPE 674


>gi|145300961|ref|YP_001143802.1| ATP-dependent DNA helicase RecG [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853733|gb|ABO92054.1| ATP-dependent DNA helicase RecG [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 690

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/673 (38%), Positives = 376/673 (55%), Gaps = 25/673 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L + +GVG K      K+   G A      DLLF+ P  + DR     I ++       +
Sbjct: 9   LDSLKGVGSKMQ---EKLERLGLAT---VQDLLFHLPLRYEDRTQVWPIGDLPPGLHGAV 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G I Q +   + +RR     ++DGTG +TL FF   T   KN   +GR I   G+++  
Sbjct: 63  EGEI-QDTQLVMGRRRMLVCRISDGTGTLTLRFF-NFTAAQKNSLGQGRLIRCFGEVRPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           K  + M HP Y     +        +  VY    GL     + +  +AL++L +   +  
Sbjct: 121 KYGLEMAHPEYKLLGEEQAGQTEEALTPVYPTTEGLRQLTLRSLTDQALAQLDL---YGV 177

Query: 191 KDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLM 243
           ++LL    +P    +A A  ++H P  +           PA++RL  +ELLA  +++L +
Sbjct: 178 EELLPAGLYPQQIDLAAALRLLHRPPPSVALALLESGQHPAQQRLVLEELLAHNLSVLKV 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q + ++   +     + +++L  +PF PT +Q   + +I QD+ +   M+R++QGDVG
Sbjct: 238 RAQAQTQLARALKPAPALVKQLLEALPFKPTGAQNRVVAEINQDLQRSYPMMRLVQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+  G Q  +MAP  +LA+QH      + +   I V  + G      
Sbjct: 298 SGKTLVAALAALQAIGNGCQVGLMAPTELLAEQHAINFANWLEPLGIGVGWLAGKQKGKA 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R   L  IA G   +++GTHA+FQ+ + + +L LVI+DEQHRFGV QRL L +K      
Sbjct: 358 RETQLAAIADGSVKMVVGTHAIFQEQVVFQRLALVIIDEQHRFGVHQRLALREKGEREGV 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T+  D+D S I E P GR PI TV +P +R  +VIER+K+  
Sbjct: 418 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPITTVALPDSRRPDVIERVKLAC 477

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            EGK+AYW+C  IEE +    ++  +    L        I ++HGRM  ++K+ VM+ FK
Sbjct: 478 EEGKQAYWVCTLIEESEVLECQAAEDTAAELQNQLPGLHIGLVHGRMRPVEKQRVMEEFK 537

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH 
Sbjct: 538 AGILQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHA 597

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLSK + +RL VL+ T DGFLIA+ DL+ R  GE+LG +Q+G+    IA       L+  
Sbjct: 598 PLSKTAQSRLGVLRETNDGFLIAQRDLELRGPGELLGTRQTGLADLKIADLVRDQPLIPQ 657

Query: 659 ARKDAKHILTQDP 671
            +K A+ ++ + P
Sbjct: 658 VQKMARFLMDRHP 670


>gi|326563268|gb|EGE13535.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 46P47B1]
 gi|326569240|gb|EGE19301.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis BC7]
          Length = 698

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 253/676 (37%), Positives = 375/676 (55%), Gaps = 50/676 (7%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++   GVG+  +  L+++         R  D+L + P  + DR     I ++       
Sbjct: 11  PVTALSGVGQALAGRLAEL------GIHRIFDMLLHLPRDYEDRSRVIAIKDVHHGMSAL 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G ++    +  + R    + L D TGEITL FF+    +L  +   G KITV G+IK 
Sbjct: 65  VAGVVT----WVEKNRTGLSVTLEDATGEITLRFFHTYPSLLTTMMV-GAKITVFGEIKV 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
            +    M HP Y    ++     L+  +Y    G++ +  ++++  AL+        +++
Sbjct: 120 SRYGTQMSHPDYHLTGTKKFESGLLP-IYPTIKGINQNKLRQLVRLALTA-------VQQ 171

Query: 192 DLLQKKS-----------FPSIAEAFNIIHNPRKAKDF-----------EWTSPARERLA 229
           D +   S              +  A   +H P    D            + T PA  R+ 
Sbjct: 172 DGIHGLSETQLKAAGVELTGDLLPALKAVHLPEIHADIFSQTALLAGLKDRTHPACRRII 231

Query: 230 YDELLAGQIALLLMRK---QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286
            +EL+A Q++ L  R    Q+K     PI+    +A++++  +PF  T +Q+  I + + 
Sbjct: 232 IEELVAHQVSFLFRRNHIYQYKAPKCDPIS---PLAKQLVAGLPFELTAAQKRVIDEAVS 288

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           DM+    MLR++QGDVG+GKTLVA +    A+++G Q  +MAP  ILA+QH    +K+ +
Sbjct: 289 DMATSRPMLRLIQGDVGAGKTLVAAMTACYALDSGWQVAVMAPTEILAEQHLINFQKWFE 348

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              I V  + G      R  AL+ I   Q  I++GTHALF D++ + KL LVI+DEQHRF
Sbjct: 349 PLGIGVGWLAGKQTAKERTAALDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQHRF 408

Query: 407 GVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           GV+QRL+LT K     APH L MTATPIPRTL ++  GD+D+S I E P  R PI TV I
Sbjct: 409 GVEQRLRLTNKGVSGGAPHQLAMTATPIPRTLAMSMYGDMDVSIIDELPPKRTPITTVTI 468

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             +R DEVIER++     GK+AYW+CP +EE    + +S    +  L +       +IHG
Sbjct: 469 NRDRRDEVIERIQNNCQAGKQAYWVCPLVEESSALDVQSAQLTYEDLSDRLDIRTGLIHG 528

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M   DK++VM +FK G   LLIATTVIEVG+DV +AS+++IENAE  GL+QLHQLRGRV
Sbjct: 529 KMKAADKQAVMQAFKAGDIDLLIATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRV 588

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG   S C+LLY  PLS     RL+VLK++ DGF+IA++DL+ R  GE+LG +Q+G   
Sbjct: 589 GRGSAKSFCVLLYQLPLSPTGIERLNVLKDSTDGFVIAQKDLELRGAGELLGKRQTGDMG 648

Query: 644 FLIAQPELHDSLLEIA 659
           + +A     ++LLE A
Sbjct: 649 YYLADIVRDEALLEAA 664


>gi|318603764|emb|CBY25262.1| ATP-dependent DNA helicase RecG [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 693

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 390/676 (57%), Gaps = 26/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS   GVG   +  L+K+       ET   DLL + P  + DR    +I ++     VT
Sbjct: 10  PLSKLSGVGASQAGKLAKM-----GLET-IQDLLLHLPLRYEDRTRLYRIGDLLPGLSVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + S     +RR     ++DG+G +TL FF     M KN    G+ +   G+ K+
Sbjct: 64  VEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
                 ++HP Y  H  +++   L E+   VY    G+   + +K+I +AL+ L   V+ 
Sbjct: 122 GNTGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQAILRKLIDQALAMLDSSVIT 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242
           E +  +L   +S  S+ EA + +H P    +  D E    PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPIEL--SRSLISLPEAIHTLHRPPADIQLADLEQGKHPAQRRLIMEELLAHNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   +    +P+  E ++ ++ L  +PF+PT +Q+  + +I QDM+    M+R++QGDV
Sbjct: 239 VRAGAQSYRALPLLPEEQLKRRFLAALPFTPTHAQQRVVAEIEQDMTHNFPMMRLIQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++     + V  + G     
Sbjct: 299 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLGPLGLEVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R    E +A GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARLAQQEAVASGQVSMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  +VI+R+K  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L EG++AYW+C  IEE +    ++       L        + ++HGRM   +K++VM +
Sbjct: 479 CLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAVMLA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +++
Sbjct: 599 KTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMI 658

Query: 657 EIARKDAKHILTQDPD 672
              ++ A+H+  Q P+
Sbjct: 659 PKVQRVARHLHQQYPE 674


>gi|261868130|ref|YP_003256052.1| ATP-dependent DNA helicase RecG [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413462|gb|ACX82833.1| ATP-dependent DNA helicase RecG [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 693

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 262/681 (38%), Positives = 387/681 (56%), Gaps = 38/681 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  L K+   G  N     DLLF+ P  + DR     I+++  E+  T
Sbjct: 10  PLTAISGVGAAVAEKLGKL---GIFN---LQDLLFHLPLRYEDRTRITPIADLQAEQYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G + Q S  Q  +R    + L+DGT ++ L FF     M KN    G ++   G++++
Sbjct: 64  IEGVV-QSSEVQFGRRPMLMVYLSDGTAKLALRFFNFNAGM-KNSLQPGARVKAFGEVRR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFPLIEA-----VYSLPTGLSVDLFKKIIVEALSRLPVL 185
            +    + HP Y I H+    N PL+ A     +Y    GL     +K+I +AL  L   
Sbjct: 122 GRFMAEIHHPEYQIIHD----NKPLVLAETLTPIYPATEGLKQTALRKLIAQALLVLDKT 177

Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAG 236
           P     +LL  +  P    +  A   +HNP    D   T+      PA++RL ++ELLA 
Sbjct: 178 PI---AELLPAECNPHPFDLKFAIQFLHNP--PPDVSLTTLEEGRHPAQQRLIFEELLAY 232

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            +A+  +R   +     P++ +  +  + L  +PF PT +Q    +DI +D++Q   M+R
Sbjct: 233 NLAMQKVRSGIQANFAEPLSYQSDLKARFLAQLPFQPTNAQLRVTEDIERDVAQPYPMMR 292

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + 
Sbjct: 293 LVQGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHAVNFRRWFEPLGIQVGWLA 352

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G +    R   LE+I  G   +++GTHALFQ+ +++++L LVIVDEQHRFGV QRL L +
Sbjct: 353 GKVKGKQRVAELEKIKSGAVQMVVGTHALFQEEVEFHRLSLVIVDEQHRFGVHQRLMLRE 412

Query: 417 KATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           K       PH L+MTATPIPRTL +T   D+D S I E P GR PI T+ I  +R  E+I
Sbjct: 413 KGNQAGVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTIAISEDRRAEII 472

Query: 473 ERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
           ER+ V  + E ++AYW+C  I+E +    ++       L +      I ++HGRM   +K
Sbjct: 473 ERVNVACTQEKRQAYWVCTLIDESEMLEAQAAEAVAEDLRKILPHLRIGLVHGRMKPNEK 532

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           ++VM  FK     LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S
Sbjct: 533 QAVMAQFKLAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTAS 592

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+L+Y PPL K S  RL V+++T+DGF+I+E+DL+ R  GE+LG KQ+G+ +F +A   
Sbjct: 593 FCVLMYKPPLGKISQKRLQVMRDTQDGFVISEKDLEIRGPGEVLGTKQTGITEFKVANLM 652

Query: 651 LHDSLLEIARKDAKHILTQDP 671
               +L   +  AK ++ + P
Sbjct: 653 RDRKMLPTVQFYAKQLVQKYP 673


>gi|90412685|ref|ZP_01220686.1| putative ATP-dependent DNA helicase RecG [Photobacterium profundum
           3TCK]
 gi|90326260|gb|EAS42679.1| putative ATP-dependent DNA helicase RecG [Photobacterium profundum
           3TCK]
          Length = 697

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 253/678 (37%), Positives = 391/678 (57%), Gaps = 28/678 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+   GVG K +  L K+        T   DLLF+ P  + DR     I++    + + +
Sbjct: 11  LTELSGVGAKMAEKLEKV------GLTSVQDLLFHLPLRYEDRTRIWPIAQAMPGQHIAV 64

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +  +SS    KRR   + + D +G  TL FF     M +N   EG+++   G+IK+ 
Sbjct: 65  QGEVL-NSSITFGKRRMLTVRIADNSGSATLRFFNFNAAM-QNNLAEGKQVKAFGEIKRG 122

Query: 133 KNRIIMVHPHY-IFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188
           K  + ++HP Y +F  S  +     +  VY    GL     + +  +AL+ L    + E 
Sbjct: 123 KFGLEIIHPDYSVFAESASLTGEENLTPVYPTTEGLRQLTLRNLTDQALNLLDKSAVTEL 182

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMR 244
           + + L  ++   ++ +A +++H P      +       PA+ RL  +ELLA  +++L +R
Sbjct: 183 LPEGLYDRQM--TMTQALHVMHRPTPDVSLDQLEAGKHPAQHRLILEELLAQNLSMLAVR 240

Query: 245 KQFKKEIGIPI----NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            + ++    P+    N    + +K+L ++PFSPT +Q+  + DI  D+ +   M+R++QG
Sbjct: 241 SKSQQHSAWPLSACNNPADNLKEKLLASLPFSPTNAQQRVMADIEADLIKPLPMMRLVQG 300

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA +A   A++ G Q  +MAP  +LA+QH +   ++     I V  + G + 
Sbjct: 301 DVGSGKTLVAALAALHAIQHGFQVALMAPTELLAEQHVQNFAQWFNPMDIQVGWMAGKLK 360

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R   L RI  G+A +++GTHALFQD + +  L LVI+DEQHRFGV QRL+L +K   
Sbjct: 361 GKARETELARIESGEAKMVVGTHALFQDHVTFKNLALVIIDEQHRFGVHQRLELREKGAN 420

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV +P  R   ++ER++
Sbjct: 421 EGRYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVALPDTRRAAIVERIR 480

Query: 477 VVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
               +EG++AYW+C  I+E +    ++  +  + L       ++ ++HGRM   +K+ +M
Sbjct: 481 SACQNEGRQAYWVCTLIDESEVLEAQAASDTADELTAQLPELNVGLVHGRMKAAEKQEIM 540

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK G  +LL+ATTVIEVG+DV +AS+++IEN E  GLAQLHQLRGRVGRG+  S C+L
Sbjct: 541 RRFKAGELQLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGKVASHCVL 600

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LYH PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       
Sbjct: 601 LYHAPLSKTAQKRLGVLRDSSDGFVIAQRDLEIRGPGELLGTKQTGIADFKIADLVRDQH 660

Query: 655 LLEIARKDAKHILTQDPD 672
           L+   +K A++I  Q P+
Sbjct: 661 LIPQVQKLARYIHEQYPN 678


>gi|36783701|emb|CAE12554.1| ATP-dependent DNA helicase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 703

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 261/695 (37%), Positives = 398/695 (57%), Gaps = 44/695 (6%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR   L+ +  PL++ RGVG   +  L+KI   G  N     DLL + P  + D+     
Sbjct: 11  MRGPLLDAI--PLTSLRGVGANQAAKLAKI---GLVN---LQDLLLHFPLRYEDQTRLYT 62

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+TG I + +   + +RR     ++DGTG +TL FF     M +N   +G
Sbjct: 63  INDLLPGISATVTGEILR-TDVTVSRRRTLICKISDGTGVLTLRFFNFSAAM-RNNLAKG 120

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVE 177
           +++ V G+I++      ++HP Y   N    N  L E    +Y    G+     + +I +
Sbjct: 121 KQVVVYGEIRRGGQGAEIIHPEYKIQNHTG-NVQLQETLTPIYPTTEGVRQATLRNLIDQ 179

Query: 178 ALSRLP------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARER 227
           AL  L       +LPE + + ++      S+ +A + +H P       D E    PA  R
Sbjct: 180 ALKLLDTCTINELLPEELSRSII------SLPQALHTLHRPTPDIALVDLETGKHPAYRR 233

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           L  +ELLA  +++L +R   ++    P+  E K+  + L  +PFSPT +Q+  + +I QD
Sbjct: 234 LVLEELLAHHLSMLAVRAGVQRYHAQPLPTEDKLKPQFLNRLPFSPTHAQQRVVSEIEQD 293

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           +++   M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ + 
Sbjct: 294 LAKDVPMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRRWLEP 353

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             I V  + G      R+K  E IA+GQ  +I+GTHA+FQ+ +++  L LVI+DEQHRFG
Sbjct: 354 LGIQVGWLAGKQKGKARQKQQEAIANGQVAMIVGTHAMFQEQVKFSGLALVIIDEQHRFG 413

Query: 408 VQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           V QRL L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I
Sbjct: 414 VHQRLALWEKGREQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAI 473

Query: 464 PINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS----- 517
           P  R +E+I+R++   L E ++AYW+C  IE+      ++      +  E  T +     
Sbjct: 474 PDTRREEIIKRIRNACLDENRQAYWVCTLIEDSDVLEAQAA----QATSEELTLALPELK 529

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + ++HGRM   +K+ VM++FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLH
Sbjct: 530 VGLVHGRMKAAEKQQVMEAFKCGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLH 589

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG   S C+LLY  PLS  +  RL VL+++ DGF+IA++DL+ R  GE+LG +
Sbjct: 590 QLRGRVGRGAIASHCVLLYKTPLSSTARIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTR 649

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           Q+G  +F +A       +L   ++ A+HI    P+
Sbjct: 650 QTGNAEFKVADLLRDQGMLPEIQRIARHIHQHYPE 684


>gi|309797606|ref|ZP_07691994.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 145-7]
 gi|308118793|gb|EFO56055.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 145-7]
          Length = 693

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++   +P++    +  K+L  +PF PT +Q   + +I  DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHALPLSANDALKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|296133598|ref|YP_003640845.1| ATP-dependent DNA helicase RecG [Thermincola sp. JR]
 gi|296032176|gb|ADG82944.1| ATP-dependent DNA helicase RecG [Thermincola potens JR]
          Length = 808

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 251/666 (37%), Positives = 383/666 (57%), Gaps = 23/666 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL------LND 96
           DL +Y P  + DR        ++     T +G I       LQ+ +P + L      L D
Sbjct: 152 DLFYYIPRRYEDRSQLKPFYMLAHGETETASGII-----VGLQEIKPRRGLTITKAALRD 206

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI-KKLKNRIIMVHPHYIFHNSQDVNFPL 155
            TG    ++F +    +K     G+++ V+GK+ KK     I V    +  +S +V+   
Sbjct: 207 ATGIGYAVWFNQP--YVKKQLIPGKELIVSGKVDKKFGQVQITVADFEVVDDSDNVHVGR 264

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           I  VYS+  GL   +F+ I+   +      L E +   + ++   PSI EA   IH P  
Sbjct: 265 IVPVYSVTEGLPQRVFRTIMKNLIDSFGDRLAEPLPDSIRRRYDLPSINEALRNIHFP-- 322

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            +D+     AR RLA+DELL  Q+ L  M+  Q +K  GI     G + ++ + N+PF  
Sbjct: 323 -EDWNCIEEARRRLAFDELLVLQLGLASMKISQLRKVRGIAHKKHGPLMKRFMDNLPFPL 381

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           TK+Q+  ++ I +DM     M R+LQGDVGSGKT+V+  A+   VE+G Q V+MAP  IL
Sbjct: 382 TKAQQRVLESIYRDMESPKPMNRLLQGDVGSGKTIVSAAALIKTVESGYQGVLMAPTEIL 441

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QHY  +++      + V ++TG++    +   L+ I+ G+  I+IGTHA+ QD + + 
Sbjct: 442 AEQHYLGLRELFAPLGVKVSLLTGSISNKEKEAVLQDISQGRTDIVIGTHAVIQDEVVFQ 501

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           KL L I DEQHRFGV+QR +L QK   P VL+MTATPIPRTL +T  GD+D+S I E P 
Sbjct: 502 KLGLAITDEQHRFGVKQRARLQQKGHYPDVLVMTATPIPRTLAMTVYGDLDVSVIDELPP 561

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GR+P+KT  +  N+   + E ++  + EG++AY++CP +EE  + +  + VE  + L + 
Sbjct: 562 GRQPVKTFWVTENKRQRMYEFIRQQVKEGRQAYFVCPLVEESDKLDVEAAVETADRLAQV 621

Query: 514 FTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 I ++HGRM   +KE VM +F++G   +L+ATTVIEVG++V +A++++IE+AE F
Sbjct: 622 VFPDLRIGLLHGRMKADEKEQVMKAFRDGKIDILVATTVIEVGVNVPNATVMVIEDAERF 681

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GLAQLHQLRGRVGRG   S CILL  P   +    R+ +++ + DGF IAEEDLK R  G
Sbjct: 682 GLAQLHQLRGRVGRGSHQSYCILLADPKTDEGK-ARMQIMQASTDGFKIAEEDLKLRGPG 740

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           +  G +QSG+P   IA       +LE+AR  +  I+ +DP L+    + ++ L+ + ++ 
Sbjct: 741 DFFGTRQSGLPDLKIADIVRDVKILEMARVTSFEIIEKDPALSLPEHRELKKLM-VEKFK 799

Query: 692 EAFQFI 697
             + FI
Sbjct: 800 NKYHFI 805


>gi|320157694|ref|YP_004190073.1| ATP-dependent DNA helicase RecG [Vibrio vulnificus MO6-24/O]
 gi|319933006|gb|ADV87870.1| ATP-dependent DNA helicase RecG [Vibrio vulnificus MO6-24/O]
          Length = 673

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/639 (40%), Positives = 381/639 (59%), Gaps = 20/639 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLF+ P  + DR     I+++       + G + Q  +    KR+   + L+DG G IT
Sbjct: 15  DLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGNVMQVDTL-FGKRKMLTVKLSDGNGTIT 73

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFH---NSQDVNFPLIEAV 159
           L FF   T  +KN F EG+ +   G+IK+    + +VHP Y F       DV   L   V
Sbjct: 74  LRFF-NFTAAMKNNFAEGKLVHAYGEIKRGNMGLEIVHPDYKFFAPTQKPDVEQSLT-PV 131

Query: 160 YSLPTGLSVDLFKKIIVEALSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           Y    GL     + +  +AL+ L    + E +   L  ++   ++ +A +IIH P    +
Sbjct: 132 YPTTDGLRQITLRNLTDQALALLDKAAVQELLPAGLYDQQL--TMGQALHIIHRPSPEIN 189

Query: 218 FEW----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            E       PA+ RL  +ELLA  +++L +R + ++++ +P+    ++ Q++L  +PFSP
Sbjct: 190 LELFDEGKHPAQVRLIMEELLAQNLSMLAVRSKGQQDVALPLPPVHQLKQQLLAQLPFSP 249

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q   +++I +DM + + M+R++QGDVGSGKTLVA +A   A+E G Q  +MAP  +L
Sbjct: 250 TNAQARVVQEIEEDMQKAHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVALMAPTELL 309

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH      + +   I V  + G +    +   L RIA G+A +++GTHALFQ+ + + 
Sbjct: 310 AEQHAINFANWFEKMGIPVGWLAGKLKGKAKEAELARIASGEAKMVVGTHALFQEHVVFD 369

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            L LVI+DEQHRFGV QRL+L +K       PH L+MTATPIPRTL +T+  D++ S I 
Sbjct: 370 HLALVIIDEQHRFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVID 429

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           E P GR PI+TV IP  + ++++ER++   L+EGK+AYW+C  I+E +    ++  E   
Sbjct: 430 ELPPGRTPIQTVAIPDTKREDIVERIRHACLNEGKQAYWVCTLIDESEVLEAQAAAETAE 489

Query: 509 SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            L        I ++HGRM   +K++VM +FKN    LL+ATTVIEVG+DV +AS++IIEN
Sbjct: 490 ELQRKLPDVRIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPNASLMIIEN 549

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLAQLHQLRGRVGRG   S C+LLYH PLSK +  RLSVL+ + DGF+IA+ DL+ 
Sbjct: 550 PERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRLSVLRESNDGFVIAQRDLEI 609

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R  GE+LG KQ+G+  F IA       L+   ++ A++I
Sbjct: 610 RGPGELLGTKQTGLADFKIADLVRDQRLIPEVQRAARYI 648


>gi|212633208|ref|YP_002309733.1| ATP-dependent DNA helicase RecG [Shewanella piezotolerans WP3]
 gi|212554692|gb|ACJ27146.1| ATP-dependent DNA helicase RecG [Shewanella piezotolerans WP3]
          Length = 696

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/678 (37%), Positives = 386/678 (56%), Gaps = 26/678 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +     
Sbjct: 11  LVPITELKGVAKKMAERLAKL------GITTVQDLLFHLPLRYEDRTQIYPIASLYPGSY 64

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            T+   I      Q +KR      + D TG +TL FF       +N    G  I   G+I
Sbjct: 65  GTVEAVIQSSQVLQGRKRM-LTCTVRDDTGSLTLRFFNFSVAQ-RNGLQTGSVIRAYGEI 122

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--V 184
           ++ K+   ++HP Y    S D   PL   +  VY    GL    + K+  +AL  L    
Sbjct: 123 RRGKHFNEIIHPEYKL-VSIDDPAPLSDTLTPVYPTTEGLKQASWIKLTEQALMMLANGG 181

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK---DFE-WTSPARERLAYDELLAGQIAL 240
           LPE +  +L  + +   + +A  ++H P       D E  T PA++RL  +ELLA  +++
Sbjct: 182 LPELLPSNL--QPNHMELKQALQLLHRPNNQVSLFDLENGTHPAQQRLIQEELLAHNLSM 239

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +R++ +++  + ++  G++    L ++PF PT +Q+  + DI +D+ +   M+R++QG
Sbjct: 240 LRLRQRTRRDAAVSMSATGQLLNPFLASLPFKPTGAQQRVVSDITRDLEKAEPMMRLVQG 299

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA +A   A+E+G Q  +MAP  +LA+QH    + + +   I V  + G + 
Sbjct: 300 DVGSGKTLVAALAALQAIESGYQVAMMAPTELLAEQHAINFRSWFEPLGIKVGWLAGKLK 359

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R ++L  I  G A+I+IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +K  +
Sbjct: 360 GKARTQSLADIESGDANIVIGTHAIFQQQVVFNKLALIIIDEQHRFGVHQRLGLREKGVS 419

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV +   R +EVI+R++
Sbjct: 420 QGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAVSDQRREEVIDRVR 479

Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
              +++ ++AYW+C  IEE +    ++  +    L        + ++HGRM   +K+ +M
Sbjct: 480 QAAVNDNRQAYWVCTLIEESEALECQAAEDTAEELKLALPELKVGLVHGRMKPAEKQQIM 539

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L
Sbjct: 540 ASFKAGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIASHCVL 599

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +Y PPLS  +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+    IA      +
Sbjct: 600 MYKPPLSATATKRLGVLRQSNDGFIIAQRDLEIRGPGEVLGTKQTGVADMKIADLMRDQA 659

Query: 655 LLEIARKDAKHILTQDPD 672
           L+   +K A H++ Q PD
Sbjct: 660 LIPHVQKLAPHVMQQAPD 677


>gi|82779143|ref|YP_405492.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae Sd197]
 gi|81243291|gb|ABB64001.1| DNA helicase [Shigella dysenteriae Sd197]
          Length = 693

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H PR   +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPRPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIECDMALNVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|319424728|gb|ADV52802.1| ATP-dependent DNA helicase RecG [Shewanella putrefaciens 200]
          Length = 691

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/680 (37%), Positives = 389/680 (57%), Gaps = 30/680 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +S    
Sbjct: 6   LVPITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALSPGSY 59

Query: 70  VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            TI   I    S Q+ + R   ++ N  D TG ++L FF       +N    G  I   G
Sbjct: 60  GTIEAEIQ---STQIIQGRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYG 115

Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           ++++  ++  +VHP Y + +  +DV+    +  +Y    GL    + K+  +AL    +L
Sbjct: 116 EVRRGSHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALV---LL 172

Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQI 238
            E    +LL  +  P   S+ +A   +H P       D E    PA++RL  +ELLA  +
Sbjct: 173 KEGGLTELLPPQLQPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNL 232

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           ++L +R++   +  + +   G++    L  +PF PT +Q+  + DI +D+ + + M+R++
Sbjct: 233 SMLRLRQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLV 292

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G 
Sbjct: 293 QGDVGSGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGK 352

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +K 
Sbjct: 353 LKGKARTQSLADIESGAAQMVIGTHAIFQQHVVFNKLALIIIDEQHRFGVHQRLGLREKG 412

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R +EV+ER
Sbjct: 413 MSQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLER 472

Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           ++  V+++ ++AYW+C  IEE +    ++  +    L       +I ++HGR+   +K+ 
Sbjct: 473 VRNAVITDQRQAYWVCTLIEESEVLECQAAEDTAEELRLALPDLNIGLVHGRLKSAEKQQ 532

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M  FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C
Sbjct: 533 IMADFKAGMIHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIASHC 592

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY  PLS  +  RLSVL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA     
Sbjct: 593 VLLYKAPLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 652

Query: 653 DSLLEIARKDAKHILTQDPD 672
            +L+   +K A H++TQ P+
Sbjct: 653 QALIPHIQKLANHVMTQAPE 672


>gi|260913046|ref|ZP_05919528.1| DNA helicase RecG [Pasteurella dagmatis ATCC 43325]
 gi|260632633|gb|EEX50802.1| DNA helicase RecG [Pasteurella dagmatis ATCC 43325]
          Length = 693

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 262/681 (38%), Positives = 388/681 (56%), Gaps = 30/681 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++T  GVG   S  LS+I   G  N     DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PITTLSGVGPAVSEKLSRI---GIHN---LQDLLFHLPIRYEDRTRITPIKDLRPESYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q    Q  KR    + L+DGT +I+L FF     M K+    G ++   G+IK+
Sbjct: 64  IEG-IVQTCEVQFGKRPILSVSLSDGTSKISLRFFNFNAGM-KSSLQPGARVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y  +  N   V    +  +YS   GL  +  +K+  +AL+   VL +  
Sbjct: 122 GRFMAEIHHPDYQILRDNVPSVLEETLTPIYSTTEGLKQNSLRKLTDQALA---VLDKIQ 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
             ++L  +  P   S+ EA   +H P      E       PA++RL ++ELLA  +A+  
Sbjct: 179 IAEILPNEFNPHPFSLKEAIRFLHRPPPDTSLEALENGKHPAQQRLIFEELLAHNLAMQK 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++    P++    + Q+ L  +PF PT +Q    +DI +D++    M+R++QGDV
Sbjct: 239 VRLGTQQFSAYPLHYRSDLKQRFLAQLPFKPTNAQARVTQDIERDLANPFPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +   
Sbjct: 299 GSGKTLVAALAAILAIDNGKQVALMAPTEILAEQHTASFRRWLEPLGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  LE I  G+  +++GTHALFQ+++++  L LVIVDEQHRFGV QRL L +K     
Sbjct: 359 ARQTELEDIRTGKVQMVVGTHALFQENVEFSDLALVIVDEQHRFGVHQRLMLREKGKKAD 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R  EVI R+   
Sbjct: 419 MYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRAEVIARVNNA 478

Query: 478 VLSEGKKAYWICPQIEEKK---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
            ++E ++AYW+C  I+E +        ++ E    +  H    I ++HGRM   +K+ +M
Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLRKILPHL--RIGLVHGRMKPAEKQEIM 536

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +FK+    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L
Sbjct: 537 TAFKSAEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGTTASFCVL 596

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +Y PPL K S  RL VL+ T+DGF+I+E+DL+ R  GE+LG KQ+G+ +F +A       
Sbjct: 597 MYKPPLGKISQKRLQVLRETQDGFVISEKDLEIRGPGEVLGTKQTGIAEFKVANLLRDRK 656

Query: 655 LLEIARKDAKHILTQDPDLTS 675
           ++   +  A+ ++ + PD+ +
Sbjct: 657 MIPTVQYYARRLIVEQPDIAA 677


>gi|161579578|ref|NP_927622.2| ATP-dependent DNA helicase RecG [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 693

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 261/695 (37%), Positives = 398/695 (57%), Gaps = 44/695 (6%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR   L+ +  PL++ RGVG   +  L+KI   G  N     DLL + P  + D+     
Sbjct: 1   MRGPLLDAI--PLTSLRGVGANQAAKLAKI---GLVN---LQDLLLHFPLRYEDQTRLYT 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+TG I + +   + +RR     ++DGTG +TL FF     M +N   +G
Sbjct: 53  INDLLPGISATVTGEILR-TDVTVSRRRTLICKISDGTGVLTLRFFNFSAAM-RNNLAKG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVE 177
           +++ V G+I++      ++HP Y   N    N  L E    +Y    G+     + +I +
Sbjct: 111 KQVVVYGEIRRGGQGAEIIHPEYKIQNHTG-NVQLQETLTPIYPTTEGVRQATLRNLIDQ 169

Query: 178 ALSRL------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARER 227
           AL  L       +LPE + + ++      S+ +A + +H P       D E    PA  R
Sbjct: 170 ALKLLDTCTINELLPEELSRSII------SLPQALHTLHRPTPDIALVDLETGKHPAYRR 223

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           L  +ELLA  +++L +R   ++    P+  E K+  + L  +PFSPT +Q+  + +I QD
Sbjct: 224 LVLEELLAHHLSMLAVRAGVQRYHAQPLPTEDKLKPQFLNRLPFSPTHAQQRVVSEIEQD 283

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           +++   M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ + 
Sbjct: 284 LAKDVPMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRRWLEP 343

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             I V  + G      R+K  E IA+GQ  +I+GTHA+FQ+ +++  L LVI+DEQHRFG
Sbjct: 344 LGIQVGWLAGKQKGKARQKQQEAIANGQVAMIVGTHAMFQEQVKFSGLALVIIDEQHRFG 403

Query: 408 VQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           V QRL L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I
Sbjct: 404 VHQRLALWEKGREQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAI 463

Query: 464 PINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS----- 517
           P  R +E+I+R++   L E ++AYW+C  IE+      ++      +  E  T +     
Sbjct: 464 PDTRREEIIKRIRNACLDENRQAYWVCTLIEDSDVLEAQAA----QATSEELTLALPELK 519

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + ++HGRM   +K+ VM++FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLH
Sbjct: 520 VGLVHGRMKAAEKQQVMEAFKCGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLH 579

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG   S C+LLY  PLS  +  RL VL+++ DGF+IA++DL+ R  GE+LG +
Sbjct: 580 QLRGRVGRGAIASHCVLLYKTPLSSTARIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTR 639

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           Q+G  +F +A       +L   ++ A+HI    P+
Sbjct: 640 QTGNAEFKVADLLRDQGMLPEIQRIARHIHQHYPE 674


>gi|301018981|ref|ZP_07183204.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 69-1]
 gi|300399475|gb|EFJ83013.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 69-1]
          Length = 693

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDAPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R +++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRNDIIDRMRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|24375845|ref|NP_719888.1| ATP-dependent DNA helicase RecG [Shewanella oneidensis MR-1]
 gi|24350804|gb|AAN57332.1|AE015869_8 ATP-dependent DNA helicase RecG [Shewanella oneidensis MR-1]
          Length = 688

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/679 (37%), Positives = 395/679 (58%), Gaps = 28/679 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV K+ +  L+K+        T   DLLF+ P  + DR     I+ +     
Sbjct: 3   LVPITELKGVAKRVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGNY 56

Query: 70  VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            TI   I    S Q+ + R   ++ N  D TG ++L FF       +N    G  I   G
Sbjct: 57  GTIEAEIQ---STQILQGRKRMLVCNVRDNTGSMSLRFFNFSMAQ-RNAMQNGLMIRAYG 112

Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP-- 183
           +I++  ++  +VHP Y I +  +D++    +  +Y    GL    + K+  +AL  L   
Sbjct: 113 EIRRGNHQAEIVHPEYKIVYPGEDIHLSDTLTPIYPTTEGLKQASWIKLTEQALELLEDG 172

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQIA 239
            L E +  DL  + +  S+ +A   +H P       D E    PA++RL  +ELLA  ++
Sbjct: 173 GLTELLPADL--QPNNMSLKQALQTLHRPHAGISQFDLELGQHPAQQRLVQEELLAHNLS 230

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +L +R++   +  + ++  G++    L ++PF PT +Q+  + +I +D++Q + M+R++Q
Sbjct: 231 MLRLRQRSNLDAAVTMHATGQLLNPFLTSLPFKPTGAQQRVVAEIGKDLAQPHPMMRLVQ 290

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +
Sbjct: 291 GDVGSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAANFAAWFEPLGLKVGWLAGKL 350

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R ++L  I  G A I+IGTHA+FQ  + ++KL L+I+DEQHRFGV QR+ L +K  
Sbjct: 351 KGKARAQSLADIESGAAQIVIGTHAIFQQQVIFHKLALIIIDEQHRFGVHQRMGLREKGI 410

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R +EV+ER+
Sbjct: 411 NQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDSRRNEVLERV 470

Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +  V+++ ++AYW+C  IEE +    ++  +    L +     +I ++HGRM   +K+ +
Sbjct: 471 RNSVITDKRQAYWVCTLIEESEVLECQAAEDTAEELRQALPELTIGLVHGRMKSAEKQKI 530

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FK GT  LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 531 MADFKAGTINLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 590

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLS+ +  RL+VL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA      
Sbjct: 591 LLYKAPLSQTASQRLNVLRQSNDGFVIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQ 650

Query: 654 SLLEIARKDAKHILTQDPD 672
           +L+   +K A H+++Q PD
Sbjct: 651 ALIPHIQKLANHVMSQAPD 669


>gi|71278605|ref|YP_271615.1| ATP-dependent DNA helicase RecG [Colwellia psychrerythraea 34H]
 gi|71144345|gb|AAZ24818.1| ATP-dependent DNA helicase RecG [Colwellia psychrerythraea 34H]
          Length = 697

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 263/654 (40%), Positives = 378/654 (57%), Gaps = 31/654 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST +GVG   +  L KI            D+LF+ P  + D+    +I+ + +  + T
Sbjct: 13  PLSTLKGVGPSLAEKLEKI------GLLSVQDMLFHLPLRYEDK---TRITTVRDLLVGT 63

Query: 72  ITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            T  I + +  Q+   KRR   + L+DGTG I L FF       KN    G+ I   G++
Sbjct: 64  STNIIGEITDSQITHGKRRMLVVTLHDGTGSIQLCFFSFSASQ-KNSLAIGKTIRCYGEV 122

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP-- 183
           K+      +VHP Y   +  D+    +E     VY    GL     + +  +AL RL   
Sbjct: 123 KRGPRGYQIVHPEYKSLDD-DIELTPVEETLTPVYPSTDGLRQISLRSLTEQALIRLQRG 181

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIA 239
            + E +  +L  ++   S++EA  IIH P      E       PA++RL  +ELLA  ++
Sbjct: 182 QVEELLPANLFNEQY--SLSEALTIIHRPPPEVSVEQLEQGRHPAQQRLIKEELLAHNLS 239

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +L +R+       + +  + KI+QK L  +PFSPT +Q   +++I  D+++   M+R++Q
Sbjct: 240 MLKLRQNSDIHDAVSLLGDEKISQKFLNALPFSPTNAQARVVEEIKTDLAKTQPMMRLVQ 299

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +A   A+  G Q  +MAP  ILA+QH      +     I V  + G  
Sbjct: 300 GDVGSGKTLVAALAALTAISEGYQVALMAPTEILAEQHAINFANWFTPLDISVGWLAGKT 359

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +R ALE IA G+  ++IGTHALFQ  + +  L+LVI+DEQH+FGV QRL L +K  
Sbjct: 360 KAKAKRLALEHIASGEMQMVIGTHALFQADVVFKNLVLVIIDEQHKFGVHQRLTLREKGV 419

Query: 420 ----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +T+  D+D S I E P GR PI TV +P  R  +VIER+
Sbjct: 420 FDDKYPHQLIMTATPIPRTLSMTAYADLDTSIIDELPPGRTPINTVALPDLRRGDVIERI 479

Query: 476 KV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +   +++G++AYW+C  IEE +    ++  +    L E      I ++HGRM  I+K+ V
Sbjct: 480 RQGCVNDGRQAYWVCTLIEESEVLQCQAAEDTAILLQEQLPELKIGLVHGRMKAIEKQEV 539

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           MD+FK+G   LLIATTVIEVG+DV ++S+++IEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 540 MDAFKSGDLHLLIATTVIEVGVDVPNSSLMVIENPERLGLAQLHQLRGRVGRGSVASFCV 599

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           LLY  PLSK +  RL+VL+ + DGF+IAE+DL+ R  GE+LG +Q+G+    IA
Sbjct: 600 LLYKAPLSKTATKRLAVLRESNDGFVIAEKDLEIRGPGELLGTRQTGLADLKIA 653


>gi|197118286|ref|YP_002138713.1| ATP-dependent DNA helicase RecG [Geobacter bemidjiensis Bem]
 gi|197087646|gb|ACH38917.1| ATP-dependent DNA helicase RecG [Geobacter bemidjiensis Bem]
          Length = 772

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 259/703 (36%), Positives = 396/703 (56%), Gaps = 48/703 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI---- 64
           L  P+ + +GVG K +  LSK             D L+  P+ + DR    KI+++    
Sbjct: 72  LKTPMQSIKGVGPKLAATLSK------KGLDTVEDALYLLPNRYEDRRELKKIAQLRPGN 125

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           SE    T+    +Q +      RR ++ ++ D TG + L +F+     LK     GR+  
Sbjct: 126 SEAFFATVVSAAAQTTK---GGRRYFEAIVKDETGSLPLKWFHFHPNFLKKQLVPGRQGI 182

Query: 125 VTGKIKKLKNRIIMVHPHYIFH-NSQDV---------NFPLIEAVYSLPTGLSVDLFKKI 174
             G + +   +  M HP   +    +D+         NF  I  VY L  G+S  + ++I
Sbjct: 183 FIGDVAQFGFQREMHHPEVEWAAEGEDLSQVMARDPDNFGSILPVYPLTEGVSQKVMRRI 242

Query: 175 IVEALSRLP-----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPAR 225
           + +A+ R        LP+    +LLQ+    ++  A    H P +  D        S A 
Sbjct: 243 MRDAVQRYSRYVKGALPD----ELLQRHKLLTLPVALREAHLPAQDSDLSALNSGRSSAH 298

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
             LA+DEL   Q+ L L R+    E GI   V  +  +++L+ +PFS T +Q+  + +I 
Sbjct: 299 RSLAFDELFFLQLGLALKRRGIAVEDGISFKVTHRYTKELLKLLPFSLTAAQKRVLSEIK 358

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
           +DM   + M R++QGDVG GKTLVAL+A    VE   Q  IMAP  +LA+QHY  I  Y 
Sbjct: 359 EDMMSPHPMHRLVQGDVGCGKTLVALMAALVCVENDYQVAIMAPTELLAEQHYLNIHGYC 418

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +   I V ++T ++    +   LE+IA G   I++GTHA+ Q+ +++++L L I+DEQHR
Sbjct: 419 EKLGIGVTLLTASV--KGKGDTLEKIASGATQIVVGTHAVIQEKVEFHRLGLGIIDEQHR 476

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV QR +L +K   P +L+MTATPIPRTL +T  GD+ +S I E P GR PI+T ++  
Sbjct: 477 FGVVQRAQLKKKGANPDILVMTATPIPRTLSMTVFGDLSLSVIDELPPGRTPIETRMVRE 536

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------A 519
           +R  EV   ++   ++G++AY I P +EE ++S+ ++ V+    + EH    +      A
Sbjct: 537 SRRKEVYALVREEAAKGRQAYVIYPLVEETEKSDLKAAVQ----MAEHLAQDVFPDLRVA 592

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           ++HGRM   +KE+VM  FK GT  +L+ATTVIEVGIDV +A++++IE+AE FGL+QLHQL
Sbjct: 593 VLHGRMPAAEKEAVMKEFKAGTTDILVATTVIEVGIDVPNATVMVIEHAERFGLSQLHQL 652

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           RGRVGRG E S CILL    LS++   RL V+  + DGF+IAE DL+ R  G+ LG +Q+
Sbjct: 653 RGRVGRGSERSRCILLAGDKLSEDGQKRLEVMVQSSDGFVIAEADLQIRGPGDFLGTRQA 712

Query: 640 GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           G+P+  +A       +LE ARKDA  ++ +DP+L++   + +R
Sbjct: 713 GLPELRVADILRDGGVLEQARKDAFALVERDPELSAPGHERLR 755


>gi|197264277|ref|ZP_03164351.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197242532|gb|EDY25152.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 693

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L   V+
Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCVI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|322612910|gb|EFY09862.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618975|gb|EFY15862.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625248|gb|EFY22075.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322630084|gb|EFY26857.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634276|gb|EFY31011.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635823|gb|EFY32532.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642974|gb|EFY39552.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645033|gb|EFY41564.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649867|gb|EFY46290.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653074|gb|EFY49409.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661107|gb|EFY57335.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662404|gb|EFY58617.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667282|gb|EFY63448.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674341|gb|EFY70434.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678451|gb|EFY74512.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680957|gb|EFY76991.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687107|gb|EFY83080.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323193171|gb|EFZ78389.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198252|gb|EFZ83358.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323200870|gb|EFZ85940.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206624|gb|EFZ91582.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210463|gb|EFZ95349.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216248|gb|EGA00976.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220471|gb|EGA04925.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225335|gb|EGA09569.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228449|gb|EGA12580.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234270|gb|EGA18358.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237255|gb|EGA21322.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244774|gb|EGA28778.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245851|gb|EGA29841.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250966|gb|EGA34842.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257286|gb|EGA40985.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262210|gb|EGA45771.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264579|gb|EGA48083.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268868|gb|EGA52326.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 693

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    + Q++L ++PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHAQPLSTNDTLKQQLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|218551179|ref|YP_002384970.1| ATP-dependent DNA helicase RecG [Escherichia fergusonii ATCC 35469]
 gi|218358720|emb|CAQ91378.1| ATP-dependent DNA helicase [Escherichia fergusonii ATCC 35469]
          Length = 693

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 383/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAAQSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R +++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRRNDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|323975129|gb|EGB70234.1| ATP-dependent DNA helicase RecG [Escherichia coli TW10509]
          Length = 693

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSMPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R +++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRNDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|229845419|ref|ZP_04465549.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1]
 gi|229811615|gb|EEP47314.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1]
          Length = 693

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 259/678 (38%), Positives = 394/678 (58%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI   G  N     DLLF+ P  + DR     I+ +  E+ VT
Sbjct: 10  PLTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q       +R    + L+DGT +I L FF     M +N F  G ++   G++K+
Sbjct: 64  IEG-IVQTCEIAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            ++   + HP Y  +  N+  V    +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRHMPEIHHPEYQIVLDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQ 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
             ++L  +  P   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  
Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +   M+R++QGDV
Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVLDIEQDLIKDYPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVNQRLMLREKGEKAG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++ R+K  
Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM   +K+ VM  
Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y
Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +A       ++
Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
              +  AK ++ + PDL 
Sbjct: 659 PTVQFYAKSLIQKYPDLA 676


>gi|293391661|ref|ZP_06635995.1| ATP-dependent DNA helicase RecG [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952195|gb|EFE02314.1| ATP-dependent DNA helicase RecG [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 693

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 262/681 (38%), Positives = 387/681 (56%), Gaps = 38/681 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  + K+   G  N     DLLF+ P  + DR     I+++  E+  T
Sbjct: 10  PLTVISGVG---AAVVEKLGKLGIFN---LQDLLFHLPLRYEDRTRITPIADLQAEQYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G + Q S  Q  +R    + L+DGT ++ L FF     M KN    G ++   G++++
Sbjct: 64  IEGVV-QSSEVQFGRRPMLMVYLSDGTAKLALRFFNFNAGM-KNSLQPGARVKAFGEVRR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFPLIEA-----VYSLPTGLSVDLFKKIIVEALSRLPVL 185
            +    + HP Y I H+    N PL+ A     +Y    GL     +K+I +AL  L   
Sbjct: 122 GRFMAEIHHPEYQIIHD----NKPLVLAETLTPIYPSTEGLKQTTLRKLIGQALLVLDKT 177

Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAG 236
           P     +LL  +  P    +  A   +HNP    D   T+      PA++RL ++ELLA 
Sbjct: 178 PI---AELLPAECNPHPFDLKSAIQFLHNP--PPDVSLTTLEEGKHPAQQRLIFEELLAY 232

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            +A+  +R   +     P++ +  +  + L  +PF PT +Q    +DI +DM+Q   M+R
Sbjct: 233 NLAMQKVRSGIQANFAEPLSYQSDLKARFLAQLPFQPTNAQLRVTEDIERDMAQSYPMMR 292

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + 
Sbjct: 293 LVQGDVGSGKTLVAALAALIAIDNGKQVALMAPTEILAEQHAVNFRRWFEPIGIQVGWLA 352

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G +    R   LE+I  G   +++GTHALFQ+ +++++L LVIVDEQHRFGV QRL L +
Sbjct: 353 GKVKGKQRVAELEKIKSGAVQMVVGTHALFQEDVEFHRLSLVIVDEQHRFGVHQRLMLRE 412

Query: 417 KATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           K       PH L+MTATPIPRTL +T   D+D S I E P GR PI T+ I  +R  E+I
Sbjct: 413 KGNQAGVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTIAISEDRRAEII 472

Query: 473 ERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
           ER+ V  + E ++AYW+C  I+E +    ++       L +      I ++HGRM   +K
Sbjct: 473 ERVNVACTQEKRQAYWVCTLIDESEVLEAQAAEAVAEDLRKILPHLRIGLVHGRMKPNEK 532

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           ++VM  FK     LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S
Sbjct: 533 QAVMAQFKLVELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTAS 592

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+L+Y PPL K S  RL V+++T+DGF+I+E+DL+ R  GE+LG KQ+G+ +F +A   
Sbjct: 593 FCVLMYKPPLGKISQKRLQVMRDTQDGFVISEKDLEIRGPGEVLGTKQTGITEFKVANLM 652

Query: 651 LHDSLLEIARKDAKHILTQDP 671
               +L   +  AK ++ + P
Sbjct: 653 RDRKMLPTVQFYAKQLVQKYP 673


>gi|218707286|ref|YP_002414805.1| ATP-dependent DNA helicase RecG [Escherichia coli UMN026]
 gi|293407275|ref|ZP_06651199.1| ATP-dependent DNA helicase recG [Escherichia coli FVEC1412]
 gi|298383021|ref|ZP_06992616.1| ATP-dependent DNA helicase recG [Escherichia coli FVEC1302]
 gi|300898587|ref|ZP_07116917.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 198-1]
 gi|331665277|ref|ZP_08366178.1| ATP-dependent DNA helicase RecG [Escherichia coli TA143]
 gi|331685314|ref|ZP_08385900.1| ATP-dependent DNA helicase RecG [Escherichia coli H299]
 gi|218434383|emb|CAR15309.1| ATP-dependent DNA helicase [Escherichia coli UMN026]
 gi|284923714|emb|CBG36811.1| ATP-dependent DNA helicase [Escherichia coli 042]
 gi|291426086|gb|EFE99120.1| ATP-dependent DNA helicase recG [Escherichia coli FVEC1412]
 gi|298276857|gb|EFI18375.1| ATP-dependent DNA helicase recG [Escherichia coli FVEC1302]
 gi|300357750|gb|EFJ73620.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 198-1]
 gi|331057787|gb|EGI29773.1| ATP-dependent DNA helicase RecG [Escherichia coli TA143]
 gi|331077685|gb|EGI48897.1| ATP-dependent DNA helicase RecG [Escherichia coli H299]
          Length = 693

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDAPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R +++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRNDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|323965918|gb|EGB61366.1| ATP-dependent DNA helicase RecG [Escherichia coli M863]
 gi|327250780|gb|EGE62482.1| ATP-dependent DNA helicase RecG [Escherichia coli STEC_7v]
          Length = 693

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAAQSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSMPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R +++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRNDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|204928489|ref|ZP_03219688.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204321922|gb|EDZ07120.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 693

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    + Q++L ++PF PT +Q   + +I  DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHAQPLSTNDTLKQQLLASLPFKPTSAQARVVAEIEHDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA+GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIANGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A       +
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQGM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|319789141|ref|YP_004150774.1| ATP-dependent DNA helicase RecG [Thermovibrio ammonificans HB-1]
 gi|317113643|gb|ADU96133.1| ATP-dependent DNA helicase RecG [Thermovibrio ammonificans HB-1]
          Length = 817

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 249/714 (34%), Positives = 418/714 (58%), Gaps = 35/714 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +   F P+   +G+  K    ++++   G  +    ID ++Y P  + DR    K++++ 
Sbjct: 120 IEAFFQPVEKIKGITAKR---VNRLKKLGIES---VIDAIYYLPFRYEDRTTVTKMAQLK 173

Query: 66  EERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFE----- 119
            +R   + G ++  S  + +  +   K+ L D TG ++L+F  +K      + FE     
Sbjct: 174 PDREQLVKGKVTAISQIKTKNGKELLKVTLYDKTGAVSLIFLNKKVFGYYKLLFEKAKKL 233

Query: 120 GRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKK---II 175
           G+++   GK+K+  +   + HP   +    +      I  +Y    GL     ++    +
Sbjct: 234 GKEVLAYGKVKRSTSGFTIYHPEVEVLEPGRLEKLGRILPIYHCAEGLKQTTVRRDIHFV 293

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE---WTSPARERLAYDE 232
           VE +  LP +PE++ + + +++     AEAF  +H P   K  E   + SP + R+ +DE
Sbjct: 294 VEKV--LPFMPEYLPEKIRKRQKLLEAAEAFWRVHFPSDEKPEELQTFRSPPQRRVIFDE 351

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           L   Q+AL L R++ K+E GI   V  ++ ++  + +PF  T +QE  +K+I++DM +  
Sbjct: 352 LFLFQLALALHRQKVKRERGIAFPVTEELIEEFKKALPFKLTGAQERVLKEIVEDMKKPE 411

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++QGDVGSGKT+VA  A   A ++G Q  +MAP  ILA QHY+  K++ +   I V
Sbjct: 412 PMNRLVQGDVGSGKTVVAAAAAFFAAKSGYQTAVMAPTEILANQHYKKFKEFLKPYGITV 471

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+M +  +      I  G   +++GTHAL Q+ +++  L LV++DEQHRFGV+QR+
Sbjct: 472 GLLTGSMTKREKETVYRAIKEGVIKVVVGTHALIQEGVEFKNLGLVVIDEQHRFGVKQRV 531

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           +L +K   P VL+MTATPIPRTL +T+ GD+D+S I E PAGRKP+KT I+  + + +++
Sbjct: 532 ELKKKGKMPDVLVMTATPIPRTLAMTAYGDLDVSVIDELPAGRKPVKTEILFSDELPKLV 591

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS------IAIIHGRMS 526
           +RLK  L +G +AY + P +EE ++   ++  E    +H HF S       + ++HG+M 
Sbjct: 592 KRLKEELQKGNRAYIVYPLVEESEKLELKAATE----MH-HFWSEKLKPYRVGLLHGKMK 646

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM++FK G  ++L++TTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG
Sbjct: 647 QEEKDKVMEAFKRGEFQVLVSTTVIEVGVDVPEATVMVIEHAERFGLAQLHQLRGRVGRG 706

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
           +  S C L+    + + +  RL VL++T DGF IAE DL  R  GEI G +QSG+  F +
Sbjct: 707 DRQSYCYLVTSREVGEEAIKRLKVLESTNDGFKIAEADLAFRGPGEIFGTRQSGLGDFKV 766

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A       +L+ AR++A  ++ ++P+L  +  + ++ L+  +++ E F  +  G
Sbjct: 767 ADLRRDYDILKEARREAMELIKENPELNGL--EELKKLMK-FRFGEKFDLVEVG 817


>gi|161486064|ref|NP_756339.2| ATP-dependent DNA helicase RecG [Escherichia coli CFT073]
 gi|227883842|ref|ZP_04001647.1| ATP-dependent DNA helicase RecG [Escherichia coli 83972]
 gi|300984895|ref|ZP_07177183.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 45-1]
 gi|301047442|ref|ZP_07194521.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 185-1]
 gi|227839120|gb|EEJ49586.1| ATP-dependent DNA helicase RecG [Escherichia coli 83972]
 gi|300300650|gb|EFJ57035.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 185-1]
 gi|300408324|gb|EFJ91862.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 45-1]
 gi|307555770|gb|ADN48545.1| ATP-dependent DNA helicase RecG [Escherichia coli ABU 83972]
 gi|315292921|gb|EFU52273.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 153-1]
          Length = 693

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   DK++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPADKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|26110729|gb|AAN82913.1|AE016769_28 ATP-dependent DNA helicase recG [Escherichia coli CFT073]
          Length = 704

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 21  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 74

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 75  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 132

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 133 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 190

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 191 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 248

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 249 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 308

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 309 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 368

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 369 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 428

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 429 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 488

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   DK++VM 
Sbjct: 489 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPADKQAVMA 548

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 549 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 608

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 609 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 668

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 669 IPEVQRLARHIHERYP 684


>gi|157373102|ref|YP_001481091.1| ATP-dependent DNA helicase RecG [Serratia proteamaculans 568]
 gi|157324866|gb|ABV43963.1| ATP-dependent DNA helicase RecG [Serratia proteamaculans 568]
          Length = 693

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/678 (37%), Positives = 388/678 (57%), Gaps = 32/678 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   +  L+KI       ET   DLL + P  + DR     I+++      T
Sbjct: 10  PLTTLSGVGASQAGKLAKI-----GLET-IQDLLLHLPLRYEDRTRLYPINDLQPGIFAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + +     +RR     ++DGTG +T+ FF     M KN    GR++T  G++K+
Sbjct: 64  VEGEVLR-TDISFGRRRMLTCQISDGTGLLTMRFFNFNAAM-KNSLATGRRVTAYGEVKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRL------P 183
             +   ++HP Y I   S +V     +  VY    G+     +K+  +AL  L       
Sbjct: 122 GNHGAEIIHPEYRIQGESSEVELQESLTPVYPTTEGIRQATLRKLTDQALELLDTCAITE 181

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIA 239
           +LP  +   L+      S+ +A + +H P    +  D E    PA++RL  +ELLA  ++
Sbjct: 182 LLPSELSGGLM------SLPQALHTLHRPPPDIQLVDLEQGKHPAQKRLIMEELLAHNLS 235

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +L +R   +    +P+  + ++  + L  +PF+PT +Q+  + DI  DM +   M+R++Q
Sbjct: 236 MLAVRAGAQSYQALPLMPDDRLKTQFLAQLPFTPTGAQDRVVADIEADMQKGFPMMRLVQ 295

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V  + G  
Sbjct: 296 GDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRQWFEPLGLEVGWLAGKQ 355

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R    E IA GQ  +++GTHA+FQ+ +++  L LVI+DEQHRFGV QRL L +K  
Sbjct: 356 KGKARIAQQEAIASGQVSMVVGTHAIFQEQVKFSGLALVIIDEQHRFGVHQRLALWEKGE 415

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                 H L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R+
Sbjct: 416 EQGFHAHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRADIIQRV 475

Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           K   L EG++AYW+C  IEE +    ++    +  L        +A+IHGRM   +K++V
Sbjct: 476 KSACLEEGRQAYWVCTLIEESELLEAQAAEATWEELKTALPELKVALIHGRMKAQEKQAV 535

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 536 MQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 595

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      
Sbjct: 596 LLYKTPLSKTAQKRLQVLRDSNDGFVIAQQDLEIRGPGELLGTRQTGSAEFKVADLLRDQ 655

Query: 654 SLLEIARKDAKHILTQDP 671
           +++   ++ A+HI  Q P
Sbjct: 656 AMIPEVQRVARHIHQQYP 673


>gi|187732822|ref|YP_001882365.1| ATP-dependent DNA helicase RecG [Shigella boydii CDC 3083-94]
 gi|187429814|gb|ACD09088.1| ATP-dependent DNA helicase RecG [Shigella boydii CDC 3083-94]
          Length = 693

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSMIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|332139566|ref|YP_004425304.1| ATP-dependent DNA helicase RecG [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549588|gb|AEA96306.1| ATP-dependent DNA helicase RecG [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 690

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/651 (39%), Positives = 378/651 (58%), Gaps = 27/651 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG K +  L+KI            D+LF+ P  + DR     ++E      V+
Sbjct: 8   PITALKGVGAKVAEKLNKI------GLFTLQDILFHLPHRYEDRTRIYSVAECRPFTHVS 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +   +  Q  K+R   + L+DGTG ITL FF+    + +++   G  +   G+++ 
Sbjct: 62  VQGEV-MGADIQYGKKRMLVVKLSDGTGTITLRFFHFGA-VQRSIMTPGNTVRCFGEVRT 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPVLPEWI 189
            K  I M+HP +      D + P  E   + P   + D  K++ +  L+   L +L +  
Sbjct: 120 GKWGIEMMHPEFKL---VDEDAPPTEESLT-PVYPTTDGVKQLTLRNLTDQALKLLDKGA 175

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
             DLL +  +    S+ EA +++H P    D     E   PA+ RL  +ELL+  +++L 
Sbjct: 176 LADLLPEGIYDNQISLNEALHLVHRPPPDVDVHEMEEGLHPAQYRLILEELLSHHLSVLK 235

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +RK    + GIPI+V   +  K+L  +PFSPT +Q   ++DI +DM     M+R++QGDV
Sbjct: 236 VRKLSDAQPGIPISVNQPLIDKMLAQLPFSPTGAQARVVEDIQKDMQHARPMMRLVQGDV 295

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A  +A+ AG Q  +MAP  +LA+QH    + + +   I V  + G +   
Sbjct: 296 GSGKTLVAALAALSAIGAGHQVALMAPTELLAEQHANNFRGWLEPLGIEVGWLAGKLKGK 355

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL----TQKA 418
            R + L R+  G   +++GTHA+FQ+S+ Y +L LVIVDEQHRFGV QRL L     Q+ 
Sbjct: 356 ARNEVLARLEAGDIQMLVGTHAIFQESVTYQQLALVIVDEQHRFGVHQRLALRDKGEQQG 415

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T+  D+D S I E P GR P++TV++P  R  +VIER++  
Sbjct: 416 RYPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVQTVVLPDTRRADVIERVRQA 475

Query: 479 LSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             + G++AYW+C  I+E +    ++  +   +L        + ++HGR+   +K  VM  
Sbjct: 476 CKDNGRQAYWVCTLIDESEVLECQAAEDAAVTLRTALPDLQVGLVHGRLKPAEKAQVMAD 535

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+G   LL+ATTVIEVG+DV +ASI+IIEN E  GLAQLHQLRGRVGRG   S C+L+Y
Sbjct: 536 FKDGKLDLLVATTVIEVGVDVPNASIMIIENPERLGLAQLHQLRGRVGRGAVESQCVLMY 595

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             PLSK +  RL VL+ + DGF IA+ DL+ R  GE +G KQ+GM +  IA
Sbjct: 596 QSPLSKTATQRLGVLRESNDGFYIAQRDLEIRGPGEFMGTKQTGMAELKIA 646


>gi|237749374|ref|ZP_04579854.1| ATP-dependent DNA helicase recG [Oxalobacter formigenes OXCC13]
 gi|229380736|gb|EEO30827.1| ATP-dependent DNA helicase recG [Oxalobacter formigenes OXCC13]
          Length = 680

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 251/666 (37%), Positives = 377/666 (56%), Gaps = 23/666 (3%)

Query: 42  IDLLFYHPSSFIDRHYRPKISEISEERI--VTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           ++L+ + PS + D      ++E    RI  +   G I+  S  Q + RR   + L+DG  
Sbjct: 18  MELVLHLPSRYEDETKLTSLAEAMFRRIGHIQTEGVITL-SEIQYRPRRQLVVFLSDGAN 76

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA- 158
           ++ L F +      K +   G+++   G++++  N + MVHP Y      D N PL +A 
Sbjct: 77  QLVLRFLHFYASQQKQLAL-GKRVRARGELRQGFNGMEMVHPVYKI---VDENTPLPDAL 132

Query: 159 --VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
             VY    G+S +  +K I EAL R+  L + +   LL K   P   ++   +HNP    
Sbjct: 133 TPVYPTSEGVSQNFLRKAINEALERID-LSDTLPDALLNKLDLPGFEKSIRYLHNPPANA 191

Query: 217 D----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
           D     + T PA ER+ +DELLA Q+++   +   +++    +   G + +  +R++PF+
Sbjct: 192 DENALLDRTHPAWERMKFDELLAQQLSMRRAQIARRRQKSNVLKAPGSLTKAFIRSLPFT 251

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  QE  + +I +D+ +   M R+LQGDVGSGKT+VA IA   A++ G Q  +MAP  I
Sbjct: 252 LTDEQEKVVAEIREDLVKAWPMQRLLQGDVGSGKTVVAAIAACQAIDNGFQVAMMAPTEI 311

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QH++ + ++     I V  + G+M +  + + L  I  G+A  I+GTHAL Q+S+++
Sbjct: 312 LAEQHFQRLNEWMAPLGISVVWLNGSMKKKAKEEVLSLIGSGEAQFIVGTHALIQESVRF 371

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             L L I+DEQHRFGV QRL L  K     +  PH L+M+ATPIPRTL +T   D+D+S 
Sbjct: 372 ANLGLAIIDEQHRFGVGQRLVLRNKGGNAESIIPHQLMMSATPIPRTLAMTFYADLDVSV 431

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I + P GRKP+ T +I   R DEVIER+      G++ YW+CP IEE +    ++ VE  
Sbjct: 432 IAKLPPGRKPVVTRLIDQKRRDEVIERIHAATLGGRQVYWVCPLIEESEALQLQTAVETH 491

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             L E     S+ +IHGRM   +K++VM  F      +L+ATTVIEVG+DV +AS++IIE
Sbjct: 492 AILTEALNELSVGLIHGRMKAAEKQAVMTDFLEKRIHVLVATTVIEVGVDVPNASLMIIE 551

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           +AE FGL+QLHQLRGRVGRG   S C+L+Y  PL   +  RL  ++ T DGF+I++ DL+
Sbjct: 552 HAERFGLSQLHQLRGRVGRGSIDSVCLLMYQKPLGDTAKKRLMTMRETNDGFVISQRDLE 611

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD-PDLTSVRGQSI-RIL 684
            R  GE LG +QSG      A  E    L+  A   A+ +L    PD  ++  + + R L
Sbjct: 612 IRGPGEFLGARQSGQAMLRFADLEKDVDLIGKAASLAEDLLNGKLPDSDTIMSKHLARWL 671

Query: 685 LYLYQY 690
            Y  +Y
Sbjct: 672 DYREEY 677


>gi|254427398|ref|ZP_05041105.1| ATP-dependent DNA helicase RecG [Alcanivorax sp. DG881]
 gi|196193567|gb|EDX88526.1| ATP-dependent DNA helicase RecG [Alcanivorax sp. DG881]
          Length = 703

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/653 (39%), Positives = 370/653 (56%), Gaps = 28/653 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLF+ P  + DR     I  +  E  V I G +   +     +RR     + DGTG +T
Sbjct: 35  DLLFHLPFRYEDRTRISPIGSLRPETGVVIEGQVMA-ADVIFGRRRSLLCKVADGTGMVT 93

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE----A 158
           L  FY  T   KN    GR I V G+ +     +   HP Y   +  D   P +E     
Sbjct: 94  L-RFYHFTAAQKNNLERGRTIRVYGEPRPGSAGLEFYHPEYQL-DYADSGLPPLEKALTP 151

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
           VY    G+S    + +  +AL  L   P  E I   LL +   PS+ +A + +HNP    
Sbjct: 152 VYPTTDGVSQKTLRNLTGQALHYLHAHPPQELIPAQLLDQSGLPSLTQALSKLHNPNPDD 211

Query: 217 D----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                 E   PA +RL  +E++A Q+ +L  ++  +K    P      + +K+  ++PF+
Sbjct: 212 PVNLLLEGKHPAVKRLVMEEMVAHQLGML-QKRAGQKAFHAPRLSGRTLFEKLQASLPFA 270

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T +Q+  I +++ DM++ + MLR++QGDVGSGKTLVA  A  AA+E+G Q  +MAP  +
Sbjct: 271 LTGAQQRVIGELMGDMAKPHPMLRLVQGDVGSGKTLVAAAAALAAMESGYQVALMAPTEL 330

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QH +  + +     I V  + G++    RR+    +A+G A I++GTHALFQ+++Q+
Sbjct: 331 LAEQHRDNFRHWLAPLGIEVHWLAGSLGVKARRETNAALANGSARIVVGTHALFQEAVQF 390

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQK--------ATAPHVLLMTATPIPRTLVLTSLGDID 444
           ++L L I+DEQHRFGVQQRL L +K        +  PH L +TATPIPRTL ++  GD+D
Sbjct: 391 HRLGLTIIDEQHRFGVQQRLALREKGRFDTVNGSQVPHQLTLTATPIPRTLAMSVYGDLD 450

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL--SEGKK---AYWICPQIEEKKESN 499
            S I E P GRKPI T+++P +R  +VIER+        G+K   AYW+C  IEE +E  
Sbjct: 451 TSVIDEMPPGRKPIDTLVLPESRRPQVIERINDACRPDSGRKNTQAYWVCTLIEESEELQ 510

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++    F  L        I ++HGRM   +K   M  F  G  +LLIATTVIEVG+DV 
Sbjct: 511 AQAAEATFEELQIALPDLCIELVHGRMKAKEKAERMARFSRGDAQLLIATTVIEVGVDVP 570

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A+++++ENAE  GLAQLHQLRGRVGRG E S C+LLY  PLS     RL+V+++T DGF
Sbjct: 571 NATLMVMENAERLGLAQLHQLRGRVGRGGEQSYCLLLYKNPLSLTGKRRLAVMRDTTDGF 630

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           +IAEEDLK R  GE LG +Q+G   F IA     ++L+E A+  A  ++   P
Sbjct: 631 IIAEEDLKLRGPGEWLGTRQTGDLAFRIADLVRDEALMEPAKDVANKLMHDCP 683


>gi|294142859|ref|YP_003558837.1| ATP-dependent DNA helicase RecG [Shewanella violacea DSS12]
 gi|293329328|dbj|BAJ04059.1| ATP-dependent DNA helicase RecG [Shewanella violacea DSS12]
          Length = 691

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 261/702 (37%), Positives = 390/702 (55%), Gaps = 34/702 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV KK +  L+K+            DLLF+ P  + DR     I+ +     
Sbjct: 6   LVPVTDLKGVAKKMAERLAKL------GIHTVQDLLFHLPLRYEDRTQIYPIASLYPGSY 59

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            TI   I Q S     ++R     + D TG ITL FF       KN    G  I   G+I
Sbjct: 60  GTIEAVI-QSSQIIQGRKRMMTCTVRDDTGYITLRFFNFSVAQ-KNCLVNGTSIRAYGEI 117

Query: 130 KKLKNRIIMVHPHY-IFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--- 184
           ++ K++  ++HP Y + H   D V    +  VY    GL    + K+  +AL+ L +   
Sbjct: 118 RRGKHQAEIIHPEYKLIHEDDDLVMSDTLTPVYPTTEGLKQASWIKLTDQALAMLDLDGL 177

Query: 185 ---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQ 237
              LP  ++ + L  K+      A  ++H P          +   PA++RL  +ELLA  
Sbjct: 178 QELLPPQLQPNNLTLKA------ALQLLHRPNNQVSLFDLEQGHHPAQQRLIQEELLAHN 231

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +++L +R++  ++  + +   GK+    L+ +PF PT +Q+    +I  D+ + + M+R+
Sbjct: 232 LSMLKLRQRSNRDHAVSLTATGKLLNPFLQALPFKPTGAQQRVGVEICSDLEKSSPMMRL 291

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKTLVA  A   A+E G Q  +MAP  +LA+QH E    + +   + V  + G
Sbjct: 292 VQGDVGSGKTLVAAFAALQAIENGYQVAMMAPTELLAEQHAENFALWFEPLGLKVGRLAG 351

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +    R ++L+ I  G+++++IGTHA+FQD + +  L L+I+DEQHRFGV QRL L +K
Sbjct: 352 KIKGKARAQSLQDIESGESNMVIGTHAIFQDQVVFNNLALIIIDEQHRFGVHQRLGLREK 411

Query: 418 ATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV +   R +EVIE
Sbjct: 412 GINQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAVADMRRNEVIE 471

Query: 474 RLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531
           R++     +G++ YW+C  IEE +    ++  +    L        I +IHGRM   +K+
Sbjct: 472 RVRHAATHDGRQTYWVCTLIEESEVLECQAAEDTAAELTLALPELKIGLIHGRMKSAEKQ 531

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           ++M  FK+G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S 
Sbjct: 532 AIMAEFKSGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASH 591

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C+L+Y  PLS  +  RL VL+++ DGF+IA++DL+ R  GE+LG KQ+G+    IA    
Sbjct: 592 CVLMYKAPLSPTAIKRLGVLRDSNDGFIIAQKDLEIRGPGEVLGTKQTGIADMKIADLVR 651

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +L+   +K A HI+ Q PD  +V G   R L    QY +A
Sbjct: 652 DQALIPHIQKLAVHIMEQVPD--NVDGIVQRWLGDREQYVQA 691


>gi|113461597|ref|YP_719666.1| ATP-dependent DNA helicase RecG [Haemophilus somnus 129PT]
 gi|112823640|gb|ABI25729.1| ATP-dependent DNA helicase [Haemophilus somnus 129PT]
          Length = 693

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/690 (36%), Positives = 389/690 (56%), Gaps = 28/690 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M   FL+ +  PL++  GVG   +  L +I            DLLF+ P  + DR     
Sbjct: 1   MGGQFLDAI--PLTSLSGVGAAIAEKLGRI------GLFSLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++  ++  TI G I Q    Q  +R    + L+DGT +I L FF     M KN F  G
Sbjct: 53  IIDLRIDQHATIEG-IVQTCDIQFGRRPVLVVTLSDGTAKIALRFFNFNAGM-KNGFQLG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G+IK+ +    + HP Y I  +++ +     +  +Y+   GL  +  +K+  +A
Sbjct: 111 ARVKAFGEIKRGRFMAEIHHPEYEIIRDNRPLQLAETLTPIYATTEGLKQNTLRKLTEQA 170

Query: 179 LSRLPVLPEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYD 231
           L+ L  +P     +LL +   P   S+ +A  ++H P      E       PA+ RL ++
Sbjct: 171 LALLEKMPL---AELLPRAFNPHDFSLKQAIYVLHRPPPDISLELLEQGKHPAQLRLIFE 227

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           ELLA  +A+  +R   +    +P+  +  + Q  L  +P+ PT +Q+  + +I  D+ + 
Sbjct: 228 ELLAHNLAMQKVRCGSQHFSALPLRYQTALKQNFLDLLPYQPTNAQQRVVAEIEYDLGRS 287

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M+R++QGDVGSGKTLV  +A   A++ G Q  +M P  ILA+QH    + + +   I 
Sbjct: 288 FPMMRLVQGDVGSGKTLVVALAALTAIDNGKQVALMVPTEILAEQHTANFQHWFEPLGIK 347

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V  +TG +    R+  LE I+ G   +++GTHALFQD +++ +L+LV++DEQHRFGV QR
Sbjct: 348 VGCLTGKVKGKSRQATLEEISQGSIQMVVGTHALFQDDVKFAELVLVVIDEQHRFGVHQR 407

Query: 412 LKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           L L +K       PH L+MTATPIPRTL + +  D+DIS I E P GR PI+T+ +   R
Sbjct: 408 LMLREKGKYAGIYPHQLIMTATPIPRTLAMVAYADLDISIIDELPPGRTPIQTIAVSEER 467

Query: 468 IDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRM 525
             E++ R+    ++E ++AYW+C  I+E +    ++       L +      I +IHGRM
Sbjct: 468 RTEIVARVYNACVNEKRQAYWVCTLIDESEVLEAQAAESIAEDLQKALPVLRIGLIHGRM 527

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GLAQLHQLRGRVGR
Sbjct: 528 KASEKQEVMRQFKNAELNLLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGR 587

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
           G   S C+L+Y  PLSK S  RL V+++++DGF I+E+DL+ R  GE+LG KQ+G+ +F 
Sbjct: 588 GSTASYCVLMYKSPLSKVSRKRLEVMRSSQDGFFISEQDLEIRGPGEVLGTKQTGVAEFK 647

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           +A       +L   +  A+ ++T+ P L  
Sbjct: 648 VADLIRDRKMLPTVQHYARLLITRSPKLAD 677


>gi|300714630|ref|YP_003739433.1| ATP-dependent DNA helicase RecG [Erwinia billingiae Eb661]
 gi|299060466|emb|CAX57573.1| ATP-dependent DNA helicase RecG [Erwinia billingiae Eb661]
          Length = 693

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 251/670 (37%), Positives = 379/670 (56%), Gaps = 26/670 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   +  L+K+            DLL + P  + DR     I+++      T
Sbjct: 10  PLNSLSGVGASQAGKLAKL------GLVTVQDLLLHLPLRYEDRTQLYAINDLLPNIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + Q S     ++R     ++DG+G +TL FF     M KN    G+++T  G++K+
Sbjct: 64  VEGEVLQ-SDISFGRKRMLTCQISDGSGILTLRFFNFNAGM-KNSLSPGKRVTAYGEVKR 121

Query: 132 LKNRIIMVHPHYIF---HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
            +    ++HP Y     H+  ++   L   VYS   G+     + +  +AL+ L    + 
Sbjct: 122 GQRGAEIIHPEYRIQGDHSGVELQETLT-PVYSTTEGIRQATLRNLTDQALALLDTCAIA 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNP---RKAKDFE-WTSPARERLAYDELLAGQIALLL 242
           E +  +L Q     S+ +A   +H P       D E    PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPPELSQ--GMISLKDALRTLHRPPPDMALADLESGKHPAQRRLIMEELLAHNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   + +     ++ K+L  +PFSPT +Q   +++I QD+     M+R++QGDV
Sbjct: 239 VRAGAQRYHALSMPARHDLSNKLLAALPFSPTGAQARVVREIEQDLVHDYPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +     +  G Q  +MAP  +LA+QH    +++ +   I V  + G     
Sbjct: 299 GSGKTLVAALTALNVIAYGKQVALMAPTELLAEQHANNFRQWFEPLGIEVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARLAQQEAIASGQVSMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGEEQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I R+K  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRPDIIARVKSA 478

Query: 479 LS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            S EG++AYW+C  IEE ++   ++    +  L       ++ ++HGRM   +K++VM +
Sbjct: 479 CSDEGRQAYWVCTLIEESEQLEAQAAEATWEELKLALPELNVGLVHGRMKPSEKQAVMQA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G   LLIATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKLGEIHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +++
Sbjct: 599 KAPLSKTAQKRLQVLRDSNDGFVIAQCDLEIRGPGEMLGTRQTGNAEFKVADLLRDAAMI 658

Query: 657 EIARKDAKHI 666
              ++ A+HI
Sbjct: 659 PEVQRVARHI 668


>gi|284049968|ref|ZP_06380178.1| ATP-dependent DNA helicase RecG [Arthrospira platensis str. Paraca]
          Length = 822

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/648 (37%), Positives = 384/648 (59%), Gaps = 25/648 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99
           DLL+Y+P   ID   +  I E+     VTI   + + + F   K R   IL   + D TG
Sbjct: 153 DLLYYYPRDHIDYARQVPIKELEPGETVTIVAEVKRCNCFSSPKNRQLTILELIVKDRTG 212

Query: 100 EITLLFFYRKTEM--------LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151
           ++ +  FY              K  +  G  I  +G +KK K  I + +P     +  D 
Sbjct: 213 QLKISRFYAGNRYSNKGWQHKQKYNYPPGAIIAASGLVKKNKYGITLDNPELEILDRADS 272

Query: 152 NFPLIE-----AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
           +   ++      VY L  G+  DL +K ++ AL     LPE +   L +K     I++A 
Sbjct: 273 HAASMKIGRVLPVYPLSEGIGADLVRKAVLAALPAANKLPESLPPKLREKYQLIEISDAI 332

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK--EIGIPINVEGKIAQK 264
             IH P    + +W + AR RL +DE    QI LL  R+Q  K  E    +  +G++ ++
Sbjct: 333 TNIHFP---PNRDWLAAARRRLVFDEFFYLQIGLL-QRRQVSKTNEKSAALLPQGELIEQ 388

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
             + +PF  TK+Q+  I++IL D++ +  M R++QGDVG+GKT+VA++AM AA++AG Q 
Sbjct: 389 FYKMLPFELTKAQKRVIEEILTDLNSEEPMNRLIQGDVGAGKTVVAVVAMLAAIQAGYQT 448

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  +LA+QHY+ +  +     + VE++TG+   A RR+   ++  G+  +++GTHA
Sbjct: 449 ALMAPTEVLAEQHYQKLVGWLNLMHLPVELLTGSTKTAKRRQIHAQLQTGELPVLVGTHA 508

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L QD + ++KL LV++DEQHRFGV QR KL QK  +PHVL MTATPIPRTL LT  GD+D
Sbjct: 509 LIQDPVNFHKLGLVVIDEQHRFGVHQRAKLQQKGESPHVLTMTATPIPRTLSLTLHGDLD 568

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           +S++ E P GR+PI+T ++   +  E  + +   +++G++ Y + P +EE ++ + RS V
Sbjct: 569 VSQLDELPPGRQPIQTTMLSGRKRQEAYDLISREVAQGRQVYVVLPLVEESEKLDVRSAV 628

Query: 505 ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           E    L        +IA++HGRMS  +KE+ +  F+ G   +L++TTV+EVG+DV +A++
Sbjct: 629 EEHQKLQTKIFPELAIALLHGRMSSQEKEAAIAKFREGETNILVSTTVVEVGVDVPNATV 688

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++IENAE FGL+QLHQLRGRVGRG   S C+L+     S  +  RL VL+ ++DGF IAE
Sbjct: 689 MLIENAERFGLSQLHQLRGRVGRGAHKSYCLLMSGSS-SPEAKQRLQVLEQSQDGFFIAE 747

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            D++ R  G++LG +QSG+P F +A       +LE+AR+ A+ ++ +D
Sbjct: 748 MDMELRGPGQVLGTRQSGLPDFALASLVEDREVLELAREAAQKVIQKD 795


>gi|74314113|ref|YP_312532.1| ATP-dependent DNA helicase RecG [Shigella sonnei Ss046]
 gi|73857590|gb|AAZ90297.1| DNA helicase [Shigella sonnei Ss046]
 gi|323166861|gb|EFZ52600.1| ATP-dependent DNA helicase RecG [Shigella sonnei 53G]
          Length = 693

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|324111546|gb|EGC05527.1| ATP-dependent DNA helicase RecG [Escherichia fergusonii B253]
          Length = 693

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 383/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAAQSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLEIGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R +++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRRNDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|322716726|gb|EFZ08297.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 704

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 21  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 74

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 75  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 132

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 133 GKYGTEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 190

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 191 AELLPPELAQ--GMMSLPEALRTLHRPPPMLQLADLETGKHPAQRRLILEELLAHNLSML 248

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 249 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 308

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G    
Sbjct: 309 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 368

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 369 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 428

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++ 
Sbjct: 429 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 488

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 489 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 548

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  +S C+LL
Sbjct: 549 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVVSHCVLL 608

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 609 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAI 668

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 669 IPEVQRIARHIHERYP 684


>gi|256021344|ref|ZP_05435209.1| ATP-dependent DNA helicase RecG [Shigella sp. D9]
 gi|300815108|ref|ZP_07095333.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 107-1]
 gi|300532000|gb|EFK53062.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 107-1]
          Length = 693

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|168260500|ref|ZP_02682473.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205350535|gb|EDZ37166.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 693

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|15833781|ref|NP_312554.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           Sakai]
 gi|82546079|ref|YP_410026.1| ATP-dependent DNA helicase RecG [Shigella boydii Sb227]
 gi|161367493|ref|NP_290232.2| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 EDL933]
 gi|168748697|ref|ZP_02773719.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753477|ref|ZP_02778484.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4401]
 gi|168759773|ref|ZP_02784780.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766073|ref|ZP_02791080.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4486]
 gi|168772379|ref|ZP_02797386.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4196]
 gi|168779808|ref|ZP_02804815.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785529|ref|ZP_02810536.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC869]
 gi|168798622|ref|ZP_02823629.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC508]
 gi|195936213|ref|ZP_03081595.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809627|ref|ZP_03251964.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814424|ref|ZP_03255753.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820291|ref|ZP_03260611.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397244|ref|YP_002273132.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325846|ref|ZP_03441930.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795607|ref|YP_003080444.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224165|ref|ZP_05938446.1| ATP-dependent DNA helicase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254775|ref|ZP_05947308.1| ATP-dependent DNA helicase [Escherichia coli O157:H7 str. FRIK966]
 gi|291285023|ref|YP_003501841.1| ATP-dependent DNA helicase recG [Escherichia coli O55:H7 str.
           CB9615]
 gi|20139447|sp|Q8XD86|RECG_ECO57 RecName: Full=ATP-dependent DNA helicase recG
 gi|13364002|dbj|BAB37950.1| DNA helicase RecG [Escherichia coli O157:H7 str. Sakai]
 gi|81247490|gb|ABB68198.1| DNA helicase [Shigella boydii Sb227]
 gi|187771588|gb|EDU35432.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016894|gb|EDU55016.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4113]
 gi|189002582|gb|EDU71568.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358845|gb|EDU77264.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364763|gb|EDU83182.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369873|gb|EDU88289.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374240|gb|EDU92656.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC869]
 gi|189378859|gb|EDU97275.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC508]
 gi|208729428|gb|EDZ79029.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735701|gb|EDZ84388.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740414|gb|EDZ88096.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158644|gb|ACI36077.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4115]
 gi|209754518|gb|ACI75566.1| DNA helicase RecG [Escherichia coli]
 gi|209754520|gb|ACI75567.1| DNA helicase RecG [Escherichia coli]
 gi|209754522|gb|ACI75568.1| DNA helicase RecG [Escherichia coli]
 gi|209754524|gb|ACI75569.1| DNA helicase RecG [Escherichia coli]
 gi|209754526|gb|ACI75570.1| DNA helicase RecG [Escherichia coli]
 gi|217322067|gb|EEC30491.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           TW14588]
 gi|254595007|gb|ACT74368.1| ATP-dependent DNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|290764896|gb|ADD58857.1| ATP-dependent DNA helicase recG [Escherichia coli O55:H7 str.
           CB9615]
 gi|320177350|gb|EFW52352.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae CDC 74-1112]
 gi|320185702|gb|EFW60460.1| ATP-dependent DNA helicase RecG [Shigella flexneri CDC 796-83]
 gi|320191295|gb|EFW65945.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639559|gb|EFX09167.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           G5101]
 gi|320644998|gb|EFX14028.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H- str.
           493-89]
 gi|320650265|gb|EFX18754.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H- str. H
           2687]
 gi|320655617|gb|EFX23545.1| ATP-dependent DNA helicase RecG [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320666365|gb|EFX33364.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326337348|gb|EGD61183.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           1044]
 gi|326339846|gb|EGD63653.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           1125]
 gi|332089455|gb|EGI94559.1| ATP-dependent DNA helicase RecG [Shigella boydii 3594-74]
          Length = 693

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|62182238|ref|YP_218655.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62129871|gb|AAX67574.1| DNA helicase, resolution of Holliday junctions, branch migration
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
          Length = 693

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGTEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPMLQLADLETGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  +S C+LL
Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVVSHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAI 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|12518411|gb|AAG58796.1|AE005592_7 DNA helicase, resolution of Holliday junctions, branch migration
           [Escherichia coli O157:H7 str. EDL933]
          Length = 704

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 21  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 74

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 75  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 132

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 133 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 190

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 191 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 248

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 249 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 308

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V  + G    
Sbjct: 309 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 368

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 369 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 428

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 429 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 488

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 489 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 548

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 549 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 608

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 609 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 668

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 669 IPEVQRLARHIHERYP 684


>gi|110643893|ref|YP_671623.1| ATP-dependent DNA helicase RecG [Escherichia coli 536]
 gi|191170316|ref|ZP_03031869.1| ATP-dependent DNA helicase RecG [Escherichia coli F11]
 gi|300983467|ref|ZP_07176614.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 200-1]
 gi|110345485|gb|ABG71722.1| ATP-dependent DNA helicase RecG [Escherichia coli 536]
 gi|190909124|gb|EDV68710.1| ATP-dependent DNA helicase RecG [Escherichia coli F11]
 gi|300306931|gb|EFJ61451.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 200-1]
 gi|324012713|gb|EGB81932.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 60-1]
          Length = 693

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D +    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLDTGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDAPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   DK++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPADKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|157155919|ref|YP_001465133.1| ATP-dependent DNA helicase RecG [Escherichia coli E24377A]
 gi|157077949|gb|ABV17657.1| ATP-dependent DNA helicase RecG [Escherichia coli E24377A]
          Length = 693

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|300939292|ref|ZP_07153966.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 21-1]
 gi|300455799|gb|EFK19292.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 21-1]
          Length = 693

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q     +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVAAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   DK++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPADKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|91794823|ref|YP_564474.1| ATP-dependent DNA helicase RecG [Shewanella denitrificans OS217]
 gi|91716825|gb|ABE56751.1| ATP-dependent DNA helicase RecG [Shewanella denitrificans OS217]
          Length = 691

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 266/701 (37%), Positives = 395/701 (56%), Gaps = 36/701 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV KK +  L+K+            DLLF+ P  + DR     I+ +      T
Sbjct: 8   PVTELKGVAKKMAERLAKL------GIQTVQDLLFHLPLRYEDRTQVYPIASLPPGSYGT 61

Query: 72  ITGYISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I  +I  HSS  LQ RR   +  + D TG +TL FF   T   +N    G  I   G+I+
Sbjct: 62  IEAHI--HSSQILQGRRRMLVCQVRDNTGSLTLKFF-NFTMAQRNSMQNGALIRAYGEIR 118

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV---- 184
           +  ++  +VHP Y   +S +   P   +  +Y    GL    + K+  +AL  L      
Sbjct: 119 RGSHQAEIVHPDYKIIDSDESFTPSETLSPIYPTTEGLKQASWLKLTEQALVMLAQGGLV 178

Query: 185 --LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQI 238
             LPE +  + L      S+ +A  I+H P      E       PA++RL  +ELLA  +
Sbjct: 179 ERLPEQLRPNNL------SLPQALQILHRPPNHVSQEALEQGQHPAQQRLIQEELLAHNL 232

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           ++L +R++  ++  +P+   G++    L ++PFSPT +Q+    DI  D+ +   M+R++
Sbjct: 233 SMLKLRQRSNQDSAMPMAASGRLLNPFLASLPFSPTGAQQRVGIDISTDLEKPQPMMRLV 292

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G 
Sbjct: 293 QGDVGSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHSANFSAWFEPLGIKVGWLAGK 352

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    R ++LE IA G A +++GTHALFQ ++ + KL L+I+DEQHRFGV QRL+L +K 
Sbjct: 353 LKGKARAQSLEDIASGAAQMVVGTHALFQQNVAFNKLALIIIDEQHRFGVHQRLELREKG 412

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R ++VI R
Sbjct: 413 VSQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRREQVIAR 472

Query: 475 L-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           + +   ++ ++ YW+C  I+E +    ++  +    L        + ++HGRM   DK++
Sbjct: 473 VQQAAKTDKRQTYWVCTLIDESEVLECQAAEDTAAELAIALPELKVGLVHGRMKSADKQA 532

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM  FK G   LL+ATTVIEVG+DV +AS+++IEN E  GLAQLHQLRGRVGRG   S C
Sbjct: 533 VMAQFKMGELDLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGAIASHC 592

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY  PLS  +  RL VL+++ DGF+IA++DL+ R  GE+LG KQ+G+ +  IA     
Sbjct: 593 VLLYKAPLSYTATKRLGVLRDSNDGFVIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 652

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             L+   +K A H++ Q P+   V G   R L +  QY +A
Sbjct: 653 QYLIPHIQKLAVHMMQQAPE--QVDGIITRWLGHRQQYVQA 691


>gi|218702421|ref|YP_002410050.1| ATP-dependent DNA helicase RecG [Escherichia coli IAI39]
 gi|218372407|emb|CAR20281.1| ATP-dependent DNA helicase [Escherichia coli IAI39]
          Length = 693

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R +++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRNDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|145630714|ref|ZP_01786493.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           R3021]
 gi|144983840|gb|EDJ91290.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           R3021]
          Length = 693

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/678 (37%), Positives = 394/678 (58%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI   G  N     DLLF+ P  + DR     I+ +  E+  T
Sbjct: 10  PLTSLSGVGATISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q       +R    + L+DGT +I L FF     M +N F  G ++   G++K+
Sbjct: 64  IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            ++   + HP Y  +  N+  V    +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQ 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
             ++L  +  P   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  
Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +   M+R++QGDV
Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++ R+K  
Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM   +K+ +M +
Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDIMAA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y
Sbjct: 539 FKNAELNLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +A       ++
Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
              +  AK ++ + PDL 
Sbjct: 659 PTVQHYAKSLIQKYPDLA 676


>gi|225629771|ref|ZP_03787715.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591375|gb|EEH12471.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 551

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/540 (43%), Positives = 325/540 (60%), Gaps = 14/540 (2%)

Query: 64  ISEERIVTITGYIS---QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           +S+ R+   T +I+   +H S    + RPYKI++   +  I ++FF    + L  +F  G
Sbjct: 7   LSDARVGEFTTFIAKVYEHQSPTF-RGRPYKIVVESESQYIFIVFFNYSVKYLYKLFPIG 65

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----FPLIEAVYSLPTGLSVDLFKKIIV 176
             + ++GK++K      + HP Y+   S D+N       IE VY L  G++      II 
Sbjct: 66  ANVIISGKLEKFAEHWQITHPDYV---SLDINQFKEIACIEPVYQLCRGITNKRIGNIIS 122

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
             L  LP LPEWI+  L+++K + S  E+   +H P    + E     R+RLAYDEL A 
Sbjct: 123 SNLKELPDLPEWIDDTLIKQKKWLSWRESIIKLHRPSSLAEAE---VCRKRLAYDELFAY 179

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q+AL L RK   KE G    +  K  +++L  + F  T  Q  AI +I +    K RM+ 
Sbjct: 180 QLALKLARKNHVKERGREFIILSKYKEQVLNELSFQLTNDQTRAIDEISERQKSKYRMIS 239

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VAL AM   VE   QA +MAP  ILA+QHY +I++    T I V ++T
Sbjct: 240 LLQGDVGSGKTVVALFAMINVVENNMQAALMAPTTILAEQHYNWIEEVLSCTDIKVALLT 299

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G   +  R+  +  +A G  +I+IGTHALFQ ++ +  L L ++DEQ RFGV QR +L  
Sbjct: 300 GKTSRKERKIIMNELASGVLNIVIGTHALFQANVTFKNLGLAVIDEQQRFGVMQRNRLVG 359

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K     +L +TATPIPRTL     GD++ S + EKP  R PIKTV + I+R+ +VIE+LK
Sbjct: 360 KGENADILFVTATPIPRTLQQAMYGDVECSILKEKPKSRLPIKTVTMNISRVPDVIEKLK 419

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             ++ G+KAYWICP IEE +E+N  +   RF  L + F   + IIHG+++   K+ VM S
Sbjct: 420 GAINRGEKAYWICPYIEENEETNIAAAEMRFQELQKTFLDKVGIIHGKLTQEQKDQVMFS 479

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK     LL+ATTVIEVGIDV DA+I+IIE AE FGL+QLHQLRGRVGRG + S C+LLY
Sbjct: 480 FKRNEFSLLVATTVIEVGIDVPDATIMIIEYAEQFGLSQLHQLRGRVGRGNKPSFCVLLY 539


>gi|293463976|ref|ZP_06664390.1| ATP-dependent DNA helicase RecG [Escherichia coli B088]
 gi|291321608|gb|EFE61044.1| ATP-dependent DNA helicase RecG [Escherichia coli B088]
 gi|323944105|gb|EGB40185.1| ATP-dependent DNA helicase RecG [Escherichia coli H120]
          Length = 693

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM  ++K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPVEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|242241346|ref|YP_002989527.1| ATP-dependent DNA helicase RecG [Dickeya dadantii Ech703]
 gi|242133403|gb|ACS87705.1| ATP-dependent DNA helicase RecG [Dickeya dadantii Ech703]
          Length = 693

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 382/676 (56%), Gaps = 26/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST  GVG   +  L++I       ET   DLL + P  + DR +   I+++      T
Sbjct: 10  PLSTLAGVGASQATKLARI-----GLET-VEDLLLHLPLRYEDRTHLYPINDLLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + S     +RR     ++DG+G +TL FF     M KN    G++I   G+I++
Sbjct: 64  VEGEVLR-SDISFGRRRMLTCQISDGSGMLTLRFFNFNAGM-KNSLSPGQRILAYGEIRR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPVLP-- 186
            K    ++HP Y     +     L E    VY    G+     +K+  +AL  L   P  
Sbjct: 122 GKLGAEIIHPEYRL-QGETAQLELQETLTPVYPTTEGIRQATLRKLTDQALQLLDTHPID 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLL 242
           E + +++  +    S+ +A   +H P      E       PA++RL  +ELLA  +++L 
Sbjct: 181 ELLPQEM--RHGLISLPDALRTLHRPPPDVRLEALEQGKHPAQQRLIMEELLAHNLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++    P+  + ++ Q++L  +PFSPT +Q+  + +I QDMSQ   M+R++QGDV
Sbjct: 239 VRAGAQRYHAQPLAPDERLKQRLLAALPFSPTAAQQRVVAEIEQDMSQPFPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G     
Sbjct: 299 GSGKTLVAALAALRAITHGRQVALMAPTELLAEQHAINFRNWFAPLGIDVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+   + IA G   +++GTHA+FQ  +Q+  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARQAQQDAIASGAVAMVVGTHAIFQQQVQFNGLALVIIDEQHRFGVHQRLALWEKGEEQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  +VI+R++  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRADVIQRVRHA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L E ++AYW+C  IEE      ++       L       +I ++HGRM   +K++VM++
Sbjct: 479 CLQEERQAYWVCTLIEESDLLEAQAAEATLQELQAALPDLTIGLVHGRMKTQEKQAVMEA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKTGRLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +L+
Sbjct: 599 KSPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAEFKVADLLRDQALI 658

Query: 657 EIARKDAKHILTQDPD 672
              ++ A+HI    P+
Sbjct: 659 PQVQRVARHIHAHYPE 674


>gi|332282577|ref|ZP_08394990.1| ATP-dependent DNA helicase recG [Shigella sp. D9]
 gi|332104929|gb|EGJ08275.1| ATP-dependent DNA helicase recG [Shigella sp. D9]
          Length = 704

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 21  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 74

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 75  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 132

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 133 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 190

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 191 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 248

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 249 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 308

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V  + G    
Sbjct: 309 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 368

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 369 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 428

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 429 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 488

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 489 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 548

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 549 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 608

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 609 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 668

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 669 IPEVQRLARHIHERYP 684


>gi|331679744|ref|ZP_08380414.1| ATP-dependent DNA helicase RecG [Escherichia coli H591]
 gi|331072916|gb|EGI44241.1| ATP-dependent DNA helicase RecG [Escherichia coli H591]
          Length = 704

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 21  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 74

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 75  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 132

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 133 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 190

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 191 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 248

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 249 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 308

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 309 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 368

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 369 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 428

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 429 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 488

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM  ++K++VM 
Sbjct: 489 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPVEKQAVMA 548

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 549 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 608

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 609 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 668

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 669 IPEVQRLARHIHERYP 684


>gi|283836030|ref|ZP_06355771.1| ATP-dependent DNA helicase RecG [Citrobacter youngae ATCC 29220]
 gi|291068214|gb|EFE06323.1| ATP-dependent DNA helicase RecG [Citrobacter youngae ATCC 29220]
          Length = 693

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/671 (38%), Positives = 379/671 (56%), Gaps = 28/671 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNTLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +LLQ     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELLQ--GMMSLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P+N + ++  ++L  +PF PT +Q     +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLNPDDRLKNQLLAALPFKPTGAQARVTAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRSWFEPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477

Query: 478 VLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             + EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K+SVM 
Sbjct: 478 ACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQSVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGTAEFKVADLLRDQAI 657

Query: 656 LEIARKDAKHI 666
           +   ++ A+HI
Sbjct: 658 IPEVQRIARHI 668


>gi|191167788|ref|ZP_03029594.1| ATP-dependent DNA helicase RecG [Escherichia coli B7A]
 gi|300907695|ref|ZP_07125323.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 84-1]
 gi|301303887|ref|ZP_07210006.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 124-1]
 gi|190902131|gb|EDV61874.1| ATP-dependent DNA helicase RecG [Escherichia coli B7A]
 gi|300400631|gb|EFJ84169.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 84-1]
 gi|300840850|gb|EFK68610.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 124-1]
 gi|315254040|gb|EFU34008.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 85-1]
          Length = 693

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|281180698|dbj|BAI57028.1| DNA helicase RecG [Escherichia coli SE15]
          Length = 693

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   AV  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMT 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|170766831|ref|ZP_02901284.1| ATP-dependent DNA helicase RecG [Escherichia albertii TW07627]
 gi|170124269|gb|EDS93200.1| ATP-dependent DNA helicase RecG [Escherichia albertii TW07627]
          Length = 693

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAAQSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLETCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R +++I R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRNDIIARVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|73542491|ref|YP_297011.1| ATP-dependent DNA helicase RecG [Ralstonia eutropha JMP134]
 gi|72119904|gb|AAZ62167.1| ATP-dependent DNA helicase RecG [Ralstonia eutropha JMP134]
          Length = 728

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/664 (38%), Positives = 381/664 (57%), Gaps = 40/664 (6%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEE----RIVTITG-YISQHSSFQLQKRRPYKILL 94
           R +DL+ + P  + D      I+E        +   + G  IS   +F+   RR   + +
Sbjct: 55  RSVDLVLHLPMRYEDETTLMPIAEAIRRSGLGQPAQVEGEVISNEVTFR--PRRQLVVKI 112

Query: 95  NDGTGEITLLF--FY-RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151
            D +GE+TL F  FY  +T+ ++    EG ++ V G+++       MVHP  +   + D 
Sbjct: 113 ADDSGELTLRFLNFYGSQTKQME----EGVRLRVRGEVRGGFFGAEMVHP-TVRPVAPDE 167

Query: 152 NFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ----KKSFPSIAEAF 206
             P  +  VY    G+S    +K I  AL+R P LPE +   +L+    K     +AE+ 
Sbjct: 168 PLPDRLTPVYPATAGISQAYLRKAISGALARTP-LPETLPPAVLEGPVAKLKLRPLAESL 226

Query: 207 NIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI--NVEGK 260
            ++H P     +A   + + PA +R+ +DELLA QI+L     + ++E   P     EG 
Sbjct: 227 RLLHTPPPQESEAALADRSHPAWQRIKFDELLAQQISLRRA-HEARREKNAPSMPRQEGG 285

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +  + L  +PF  T +Q+  +++I  DM+ ++ M R+LQGDVGSGKT+VA +A   A++A
Sbjct: 286 LLTRFLAALPFRLTGAQQRVVEEIAADMTAQHPMHRLLQGDVGSGKTIVAALAACQAIDA 345

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G QA IMAP  ILA+QHY  +  + +   + V  + G++    +R+A+ R+  G+A + I
Sbjct: 346 GYQAAIMAPTEILAEQHYRKLSAWLEPLGVPVVWLAGSLKAREKREAVARVESGEARLAI 405

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-----------TAPHVLLMTAT 429
           GTHAL QD++++ +L L +VDEQHRFGV QRL L  KA           T PH L+M+AT
Sbjct: 406 GTHALIQDTVRFARLGLSVVDEQHRFGVAQRLALRGKAGSAEPAQTAPDTVPHQLMMSAT 465

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL +T   D+D+S I E P GR PI T ++   R DEVI+R+    +EG++ YW+C
Sbjct: 466 PIPRTLAMTYYADLDVSVIDELPPGRTPIVTRLVNDERRDEVIDRIHHAAAEGRQVYWVC 525

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P IEE +    ++ VE + +L        + ++HGR+   +K SVMD F     ++L+AT
Sbjct: 526 PLIEESEALQLQTAVETYETLVAALPDLRVGLVHGRLPPAEKASVMDDFSANRLQVLVAT 585

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS  +  RL
Sbjct: 586 TVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCLLMYQAPLSPTARERL 645

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           + ++ T DGF IA  DL  R  GE LG +QSG      A       L+E AR+ A+ +L 
Sbjct: 646 ATMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLNTDAWLVEYAREAAQVMLA 705

Query: 669 QDPD 672
           Q P+
Sbjct: 706 QFPE 709


>gi|193070345|ref|ZP_03051287.1| ATP-dependent DNA helicase RecG [Escherichia coli E110019]
 gi|192956284|gb|EDV86745.1| ATP-dependent DNA helicase RecG [Escherichia coli E110019]
          Length = 693

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLQTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|293413086|ref|ZP_06655754.1| ATP-dependent DNA helicase RecG [Escherichia coli B354]
 gi|291468733|gb|EFF11226.1| ATP-dependent DNA helicase RecG [Escherichia coli B354]
          Length = 693

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLTKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|315633797|ref|ZP_07889087.1| DNA helicase RecG [Aggregatibacter segnis ATCC 33393]
 gi|315477839|gb|EFU68581.1| DNA helicase RecG [Aggregatibacter segnis ATCC 33393]
          Length = 693

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 265/679 (39%), Positives = 385/679 (56%), Gaps = 34/679 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  L K+   G  N     DLLF+ P  + DR     I+++  ++  T
Sbjct: 10  PLTAISGVGAAIAEKLGKL---GIFN---LQDLLFHLPLRYEDRTRITPIADLQADQYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G + Q +  Q  +R    + L+DGT ++ L FF     M KN    G ++   G++++
Sbjct: 64  IEGVV-QSAEVQFGRRPMLMVYLSDGTSKLALRFFNFNAGM-KNSLQPGARVKAFGEVRR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFPLIEA-----VYSLPTGLSVDLFKKIIVEALSRLPVL 185
            +    + HP Y I H+    N PLI A     +Y    GL     +K+I +AL  L   
Sbjct: 122 GRFMAEIHHPEYQIIHD----NKPLILAETLTPIYPATEGLKQTSLRKLIAQALQVLEKT 177

Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQI 238
           P     +LL  +  P    +  A   +HNP          E   PA++RL ++ELLA  +
Sbjct: 178 PL---AELLPTEFNPHPFDLKSAIQFLHNPPPDVSLVTLEEGKHPAQQRLIFEELLAYNL 234

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           A+  +R   +  +   +     + Q+ L  +PF PTK+Q    +DI QD++Q   M+R++
Sbjct: 235 AMQKVRSGIQANLAESLIPRSNLKQRFLAQLPFQPTKAQLRVTEDIEQDIAQIYPMMRLV 294

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G 
Sbjct: 295 QGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHATNFRRWFEPLGIQVGWLAGK 354

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    R   LE+I +G   +++GTHALFQD + ++ L LVIVDEQHRFGV QRL L +K 
Sbjct: 355 VKGKQRIAELEKIKNGTVQMVVGTHALFQDEVAFHNLSLVIVDEQHRFGVHQRLMLREKG 414

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                 PH L+MTATPIPRTL +T   D+D S I E P GR PI T+ I   R  E+IER
Sbjct: 415 NQAGVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTIAISEERRAEIIER 474

Query: 475 LKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           + V  S E ++AYW+C  I+E +    ++       LH+      I ++HGRM   +K++
Sbjct: 475 VNVACSQEKRQAYWVCTLIDESEVLEAQAAEAVAEDLHKILPHLRIGLVHGRMKPSEKQA 534

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM+ FK     LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C
Sbjct: 535 VMEQFKLAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFC 594

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +L+Y PPL K S  RL V+++T+DGF+I+E+DL+ R  GE+LG KQ+G+ +F +A     
Sbjct: 595 VLMYKPPLGKISQKRLQVMRDTQDGFVISEKDLEIRGPGEVLGTKQTGITEFKVANLMRD 654

Query: 653 DSLLEIARKDAKHILTQDP 671
             +L   +  AK ++ + P
Sbjct: 655 RKMLPTVQFYAKQLVLKYP 673


>gi|300822422|ref|ZP_07102562.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 119-7]
 gi|301325335|ref|ZP_07218842.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 78-1]
 gi|331670493|ref|ZP_08371332.1| ATP-dependent DNA helicase RecG [Escherichia coli TA271]
 gi|300525069|gb|EFK46138.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 119-7]
 gi|300847862|gb|EFK75622.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 78-1]
 gi|320201322|gb|EFW75903.1| ATP-dependent DNA helicase RecG [Escherichia coli EC4100B]
 gi|324116009|gb|EGC09935.1| ATP-dependent DNA helicase RecG [Escherichia coli E1167]
 gi|331062555|gb|EGI34475.1| ATP-dependent DNA helicase RecG [Escherichia coli TA271]
          Length = 693

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM  ++K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPVEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|325499458|gb|EGC97317.1| ATP-dependent DNA helicase RecG [Escherichia fergusonii ECD227]
          Length = 693

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAAQSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLEIGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R +++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRRNDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|307128794|ref|YP_003880810.1| ATP-dependent DNA helicase [Dickeya dadantii 3937]
 gi|306526323|gb|ADM96253.1| ATP-dependent DNA helicase [Dickeya dadantii 3937]
          Length = 693

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 252/675 (37%), Positives = 388/675 (57%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST  GVG   +  L+++       ET   DLL + P  + DR +   I+++      T
Sbjct: 10  PLSTLAGVGASQAEKLARL-----GLET-VQDLLLHLPLRYEDRTHLYLINDVLPGMYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + S     +RR     ++DG+G +TL FF     M KN    G+++   G++++
Sbjct: 64  VEGDVLR-SDITFGRRRMLTCQISDGSGMLTLRFFNFNAAM-KNSLSPGQRVLAYGEVRR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            K    M+HP Y +   S  V     +  VY    G+     +K+  +AL  L   P  E
Sbjct: 122 GKLGGEMIHPEYRVQGESATVELQETLTPVYPTTEGIRQATLRKLTDQALELLNTHPIDE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + +++  +    S+ +A   +H P    + A+  +   PA++RL  +ELLA  +++L +
Sbjct: 182 LLPQEM--RHGLISLPDALRTLHRPPPDVQLAELEQGKHPAQQRLVMEELLAHHLSMLAV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   ++   + +  +  + Q++L  +PFSPT +Q+  + +I QDM++   M+R++QGDVG
Sbjct: 240 RAGAQRHRALALGPKDNLKQQLLAALPFSPTGAQQRVVAEIEQDMNKPFPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V  + G      
Sbjct: 300 SGKTLVAALAALQAIAHGKQVALMAPTELLAEQHAANFRRWFEPLGVEVGWLAGKQKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R+   E IA GQ  +++GTHA+FQ  +Q+  L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RQAQQEAIASGQVSMVVGTHAIFQQQVQFNGLALVIIDEQHRFGVHQRLALWEKGEEQGF 419

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R D++I+R++   
Sbjct: 420 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRDDIIQRVRNAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L EG++AYW+C  IEE +    ++       L       +I ++HGRM   +K++VM +F
Sbjct: 480 LQEGRQAYWVCTLIEESELLEAQAAEATCQELKAALPDLTIGLVHGRMKAQEKQAVMAAF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 540 KTNQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G   F +A      +L+ 
Sbjct: 600 SPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAAFRVADLLRDQALIP 659

Query: 658 IARKDAKHILTQDPD 672
             ++ ++H+    P+
Sbjct: 660 QVQRVSRHLHEHYPE 674


>gi|162138336|ref|YP_543156.2| ATP-dependent DNA helicase RecG [Escherichia coli UTI89]
 gi|218560724|ref|YP_002393637.1| ATP-dependent DNA helicase RecG [Escherichia coli S88]
 gi|218367493|emb|CAR05275.1| ATP-dependent DNA helicase [Escherichia coli S88]
 gi|294491775|gb|ADE90531.1| ATP-dependent DNA helicase RecG [Escherichia coli IHE3034]
 gi|307628725|gb|ADN73029.1| ATP-dependent DNA helicase RecG [Escherichia coli UM146]
 gi|315285420|gb|EFU44865.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 110-3]
 gi|323949891|gb|EGB45775.1| ATP-dependent DNA helicase RecG [Escherichia coli H252]
 gi|323954945|gb|EGB50724.1| ATP-dependent DNA helicase RecG [Escherichia coli H263]
          Length = 693

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   AV  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|260771993|ref|ZP_05880910.1| ATP-dependent DNA helicase RecG [Vibrio metschnikovii CIP 69.14]
 gi|260612860|gb|EEX38062.1| ATP-dependent DNA helicase RecG [Vibrio metschnikovii CIP 69.14]
          Length = 615

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/588 (40%), Positives = 354/588 (60%), Gaps = 18/588 (3%)

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           ++DG G +TL FF   T  +KN F  G+ I   G+IK   + + ++HP Y  +       
Sbjct: 6   ISDGNGSLTLRFF-NFTAAMKNSFAIGKVIYAFGEIKPGNHGLEIIHPDYQLYTQPQETQ 64

Query: 154 P---LIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEWIEKDLLQKKSFPSIAEAFNI 208
           P    +  VY    GL     + +  +AL+ L    + E +   L  K+   S+A+A +I
Sbjct: 65  PEEATLTPVYPTTEGLRQSTLRSLTEQALALLDKAAVQELMPDGLYDKQI--SLAQALHI 122

Query: 209 IHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
           +H P    D     E   PA+ RL  +ELLA  +++L +R + +++  +P+  +G++ ++
Sbjct: 123 LHRPPTDIDLSQFDEGRHPAQVRLIIEELLAQNLSMLAVRSKGQQDAALPLITQGQLKKQ 182

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
            L  +PF PT++Q   +++I  D+SQ + M+R++QGDVGSGKTLVA +A   A+E G Q 
Sbjct: 183 FLAQLPFQPTQAQTRVVQEIETDLSQAHPMMRLVQGDVGSGKTLVAALAALRAIEHGYQV 242

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  +LA+QH      +     I V  + G +    R+  L +IA G A +I+GTHA
Sbjct: 243 ALMAPTELLAEQHAANFANWFAPLGIQVAWLAGKLKGKARQTELTQIASGTAKMIVGTHA 302

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSL 440
           LFQ+ +++  L LVI+DEQHRFGV QRL+L +K       PH L+MTATPIPRTL +T+ 
Sbjct: 303 LFQEQVEFDHLALVIIDEQHRFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAY 362

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESN 499
            D++ S I E P GR PI+TV IP  +  ++IER++   L E K+AYW+C  I+E +   
Sbjct: 363 ADLETSIIDELPPGRTPIQTVAIPDTKRSDIIERVRHACLHEHKQAYWVCTLIDESEVLE 422

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  +    L    T   I ++HGRM   +K+ VM +FK+    LL+ATTVIEVG+DV 
Sbjct: 423 AQAAADTAEELQRQLTELKIGLVHGRMKPAEKQQVMQAFKDNQLHLLVATTVIEVGVDVP 482

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY  PLSK +  RL+VL+ + DGF
Sbjct: 483 NASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYRSPLSKTAQKRLAVLRESNDGF 542

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           +IA+ DL+ R  GE+LG KQ+G+  F IA       L+   ++ A+HI
Sbjct: 543 VIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQRLIPEVQRIARHI 590


>gi|291571510|dbj|BAI93782.1| ATP-dependent DNA helicase RecG [Arthrospira platensis NIES-39]
          Length = 822

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 251/678 (37%), Positives = 393/678 (57%), Gaps = 32/678 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99
           DLL+Y+P   ID   +  I E+     VTI   + + + F   K R   IL   + D TG
Sbjct: 153 DLLYYYPRDHIDYARQVPIKELEPGETVTIVAEVKRCNCFSSPKNRHLTILELIVKDRTG 212

Query: 100 EITLLFFYRKTEM--------LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151
           ++ +  FY              K  +  G  I  +G +KK K  I + +P     +  D 
Sbjct: 213 QLKISRFYAGNRYSNKGWQHKQKYNYPPGAIIAASGLVKKNKYGITLDNPELEILDRADS 272

Query: 152 NFPLIE-----AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
           +   ++      VY L  G+  DL +K ++ AL     LPE +   L +K     I++A 
Sbjct: 273 HAASMKIGRVLPVYPLSEGIGADLVRKAVLAALPAANKLPESLPPKLREKYQLIEISDAI 332

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK--EIGIPINVEGKIAQK 264
             IH P    + +W + AR RL +DE    QI LL  R+Q  K  E    +  +G++ ++
Sbjct: 333 TNIHFP---PNRDWLASARRRLVFDEFFYLQIGLL-QRRQVSKTNEKSAALLPQGELIEQ 388

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
             + +PF  TK+Q+  I +IL D++ +  M R++QGDVG+GKT+VA++AM AA++AG Q 
Sbjct: 389 FYKMLPFELTKAQKRVIGEILTDLNSEEPMNRLIQGDVGAGKTVVAVVAMLAAIQAGYQT 448

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  +LA+QHY+ +  +     + VE++TG+   A RR+   ++  G+  +++GTHA
Sbjct: 449 ALMAPTEVLAEQHYQKLVGWLNLMHLPVELLTGSTKTAKRRQIHAQLQTGELPVLVGTHA 508

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L QD + ++KL LV++DEQHRFGV QR KL QK  +PHVL MTATPIPRTL LT  GD+D
Sbjct: 509 LIQDPVNFHKLGLVVIDEQHRFGVHQRAKLQQKGESPHVLTMTATPIPRTLSLTLHGDLD 568

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           +S++ E P GR+PI+T ++   +  E  + +   +++G++ Y + P +EE ++ + RS V
Sbjct: 569 VSQLDELPPGRQPIQTTMLSGRKRQEAYDLISREVAQGRQVYVVLPLVEESEKLDVRSAV 628

Query: 505 ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           E    L        +IA++HGRMS  +KE+ +  F+ G   +L++TTV+EVG+DV +A++
Sbjct: 629 EEHQKLQTKIFPELAIALLHGRMSSQEKEAAIAKFREGETNILVSTTVVEVGVDVPNATV 688

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++IENAE FGL+QLHQLRGRVGRG   S C+L+     S  +  RL VL+ ++DGF IAE
Sbjct: 689 MLIENAERFGLSQLHQLRGRVGRGAHKSYCLLMSGSS-SPEAKQRLQVLEQSQDGFFIAE 747

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
            D++ R  G++LG +QSG+P F +A       +LE+AR+ A+ ++ +D  L        R
Sbjct: 748 MDMELRGPGQVLGTRQSGLPDFALASLVEDREVLELAREAAQKVIQKDYTLE-------R 800

Query: 683 ILLYLYQYNEAFQFIRAG 700
               + ++N  +Q +  G
Sbjct: 801 WPAMVAEWNRRYQKMMGG 818


>gi|68250339|ref|YP_249451.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae 86-028NP]
 gi|68058538|gb|AAX88791.1| ATP-dependent DNA helicase [Haemophilus influenzae 86-028NP]
          Length = 693

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/678 (38%), Positives = 393/678 (57%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI   G  N     DLLF+ P  + DR     I+ +  E+  T
Sbjct: 10  PLTSLSGVGAAISNKLAKI---GIQN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q       +R    + L+DGT +I L FF     M +N F  G ++   G++K+
Sbjct: 64  IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQAGVRVKAFGEVKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            ++   + HP Y  +  N+  V    +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALT---LLDKVQ 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
             ++L  +  P   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  
Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +   M+R++QGDV
Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++ R+K  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM   +K+ VM  
Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y
Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  IA       ++
Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRIANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
              +  AK ++ + PD+ 
Sbjct: 659 PTVQHYAKSLIQKYPDVA 676


>gi|170681314|ref|YP_001745952.1| ATP-dependent DNA helicase RecG [Escherichia coli SMS-3-5]
 gi|170519032|gb|ACB17210.1| ATP-dependent DNA helicase RecG [Escherichia coli SMS-3-5]
          Length = 693

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q     +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVAAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   DK++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPADKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|117918805|ref|YP_867997.1| ATP-dependent DNA helicase RecG [Shewanella sp. ANA-3]
 gi|117611137|gb|ABK46591.1| ATP-dependent DNA helicase RecG [Shewanella sp. ANA-3]
          Length = 696

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 262/700 (37%), Positives = 404/700 (57%), Gaps = 30/700 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV K+ +  L+K+        T   DLLF+ P  + DR     I+ +     
Sbjct: 11  LVPITDLKGVAKRVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGNY 64

Query: 70  VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            TI   I    S Q+ + R   ++ N  D TG ++L FF       +N    G  I   G
Sbjct: 65  GTIEAEIQ---STQIIQGRKRMLVCNVRDNTGSMSLRFFNFSMAQ-RNAMQNGLMIRAYG 120

Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP-- 183
           +I++  ++  +VHP Y I +  +D++    +  +Y    GL    + K+  +AL  L   
Sbjct: 121 EIRRGNHQAEIVHPEYKIVYPGEDIHLSDTLTPIYPTTEGLKQASWIKLTEQALELLEDG 180

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQIA 239
            L E +  +L Q  S  S+ +A   +H P       D E    PA++RL  +ELLA  ++
Sbjct: 181 GLTELLPANL-QPNSM-SLKQALQTLHRPHAGISQFDLELGQHPAQQRLVQEELLAHNLS 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +L +R++   +  + ++  G++    L ++PF PT +Q+  + +I +D++Q + M+R++Q
Sbjct: 239 MLRLRQRSNLDAAVTMHASGQLLNPFLASLPFKPTGAQQRVVAEIGKDLAQPHPMMRLVQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +
Sbjct: 299 GDVGSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGKL 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R ++LE I  G A I+IGTHA+FQ  + + KL L+I+DEQHRFGV QR+ L +K  
Sbjct: 359 KGKARAQSLEDIESGAAQIVIGTHAIFQQQVTFNKLALIIIDEQHRFGVHQRMGLREKGI 418

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R +EV+ER+
Sbjct: 419 NQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDSRRNEVLERV 478

Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +  V+++ ++AYW+C  IEE +    ++  +    L +     SI ++HGRM   +K+ +
Sbjct: 479 RNSVVTDKRQAYWVCTLIEESEVLECQAAEDTAEELRQALPELSIGLVHGRMKSAEKQKI 538

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FK G+  LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 539 MADFKAGSIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 598

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLS+ +  RL+VL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA      
Sbjct: 599 LLYKAPLSQTASQRLNVLRQSNDGFVIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQ 658

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           +L+   +K A H+++Q P+  SV     R L +  QY +A
Sbjct: 659 ALIPHIQKLASHVMSQAPE--SVDAIIHRWLGHRQQYVQA 696


>gi|323173261|gb|EFZ58890.1| ATP-dependent DNA helicase RecG [Escherichia coli LT-68]
          Length = 693

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYTDLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|16767029|ref|NP_462644.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167549006|ref|ZP_02342765.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167992300|ref|ZP_02573398.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168233269|ref|ZP_02658327.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168818424|ref|ZP_02830424.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194472508|ref|ZP_03078492.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|198244513|ref|YP_002217704.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|16422313|gb|AAL22603.1| DNA helicase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194458872|gb|EDX47711.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197939029|gb|ACH76362.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205325757|gb|EDZ13596.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205329408|gb|EDZ16172.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332535|gb|EDZ19299.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205344506|gb|EDZ31270.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|261248892|emb|CBG26746.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996008|gb|ACY90893.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160281|emb|CBW19804.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914770|dbj|BAJ38744.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320088165|emb|CBY97927.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321226798|gb|EFX51848.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323132105|gb|ADX19535.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326625489|gb|EGE31834.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|332990593|gb|AEF09576.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 693

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|307824309|ref|ZP_07654535.1| ATP-dependent DNA helicase RecG [Methylobacter tundripaludum SV96]
 gi|307734689|gb|EFO05540.1| ATP-dependent DNA helicase RecG [Methylobacter tundripaludum SV96]
          Length = 699

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/683 (37%), Positives = 380/683 (55%), Gaps = 26/683 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P+    G+G + +  L K+  C         DL+F+ P  + DR     I  +  
Sbjct: 5   NALNQPVGILTGIGAQTANRLQKLGLC------TLQDLIFHLPLRYEDRTRVYPICSLKP 58

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              V I+G + + +    + R+     ++DGTG I+L FF+       N    G  I+  
Sbjct: 59  GMSVLISGKV-EFTDILPRGRKSLICRISDGTGFISLKFFHFSASQ-HNALKPGTSISCF 116

Query: 127 GKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
            +++     + MVHP Y  I +    +    +  VY L  GL  ++ +K + +AL     
Sbjct: 117 AEVRYGFAGLEMVHPEYKVIANPDGCITETRLTPVYPLTEGLGQNIIRKAVRQALDLCRQ 176

Query: 185 LPE----WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAG 236
            PE    WI + +L++  +PS+A+A   +H P ++   E     + PA +RLA++ELL  
Sbjct: 177 DPELLTDWIPESILKQYHYPSLADAIQTLHAPDESVSIEALQNGSVPALKRLAFEELLTH 236

Query: 237 QIALLLMRKQFK--KEIGIPINVEGKIAQK-ILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            + L   R + K  +     +   GK A    +R++PF  T +Q+  I +I  D   ++ 
Sbjct: 237 FLILRTTRNKTKAWQAPSFSVGAAGKTATNHFIRSLPFKLTGAQQRVIAEIEADCRLQHP 296

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M+R++QGDVGSGKT+V+  A   A+ AG Q  +MAP  +LA+QH      + +  Q  V 
Sbjct: 297 MMRLVQGDVGSGKTVVSAYAALLALTAGYQVAVMAPTELLAEQHKRNFSIWFEGFQTQVV 356

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            +TG +    R+  L+ +  G A IIIGTHALFQDS+ +++L L+I+DEQHRFGV QRL 
Sbjct: 357 YLTGQLKGNARKTVLQALEDGTAGIIIGTHALFQDSVHFHRLGLIIIDEQHRFGVHQRLA 416

Query: 414 LTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L +K       PH L+MTATPIPRTL +    D+DIS I E P GRKPI T +IP  R  
Sbjct: 417 LREKGQQGNIRPHQLVMTATPIPRTLAMLQYSDLDISIIDELPPGRKPIVTSVIPAERRA 476

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528
           +VI+R+   + + ++ YW+C  IEE +     +  +   +L E   +  +A+IHGRM   
Sbjct: 477 DVIDRINGWVGKNRQVYWVCTLIEESEVLQCEAAEKTAETLTEALPNVRVALIHGRMKSA 536

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +K++VM  FKN    LL+ATTVIEVG+DV +A ++IIEN E  GL+QLHQLRGRVGRG +
Sbjct: 537 EKDAVMQDFKNHRIDLLVATTVIEVGVDVPNAGLMIIENPERLGLSQLHQLRGRVGRGGD 596

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            S C+L+Y  PLS  +  RL VL+++ DGF+IAE+DL+ R  GE++G +Q+G   F IA 
Sbjct: 597 DSYCLLMYQAPLSDTARHRLGVLRDSNDGFVIAEKDLELRGPGEVMGTRQTGQMHFKIAD 656

Query: 649 PELHDSLLEIARKDAKHILTQDP 671
                 LL+  ++      T  P
Sbjct: 657 LARDADLLDTVQQIGDSFFTHSP 679


>gi|300923463|ref|ZP_07139503.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 182-1]
 gi|300420290|gb|EFK03601.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 182-1]
          Length = 693

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPKYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM  ++K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPVEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|194431101|ref|ZP_03063394.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae 1012]
 gi|194420556|gb|EDX36632.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae 1012]
 gi|332084523|gb|EGI89718.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae 155-74]
 gi|332084834|gb|EGI90017.1| ATP-dependent DNA helicase RecG [Shigella boydii 5216-82]
          Length = 693

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIVHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|300919780|ref|ZP_07136255.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 115-1]
 gi|300413133|gb|EFJ96443.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 115-1]
          Length = 693

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|152972506|ref|YP_001337652.1| ATP-dependent DNA helicase RecG [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238897102|ref|YP_002921848.1| ATP-dependent DNA helicase RecG [Klebsiella pneumoniae NTUH-K2044]
 gi|262045612|ref|ZP_06018631.1| ATP-dependent DNA helicase RecG [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329996956|ref|ZP_08302653.1| ATP-dependent DNA helicase RecG [Klebsiella sp. MS 92-3]
 gi|150957355|gb|ABR79385.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238549430|dbj|BAH65781.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259037038|gb|EEW38290.1| ATP-dependent DNA helicase RecG [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539246|gb|EGF65275.1| ATP-dependent DNA helicase RecG [Klebsiella sp. MS 92-3]
          Length = 693

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI            DLL + P  + DR +   I+E+      T
Sbjct: 10  PLSSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIAELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  +S+     RR     ++DGTG +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NSNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DMSTPELQETLTPVYPTTEGIKQATLRKLTDQALELLETCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P  +           PA++RL  +ELLA  +++L
Sbjct: 180 SELLPPELAQ--GMMSLPEALRTLHRPPPSLQLSELESGKHPAQQRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++   +P+     +  ++L ++PF PT +Q     +I  DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHALPLGANDTLKNQLLASLPFKPTGAQARVTAEIEHDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIVHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA G+  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGEVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477

Query: 478 VLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             + EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGEMHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPDVQRIARHIHERYP 673


>gi|256025617|ref|ZP_05439482.1| ATP-dependent DNA helicase RecG [Escherichia sp. 4_1_40B]
 gi|300950016|ref|ZP_07163966.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 116-1]
 gi|300955359|ref|ZP_07167738.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 175-1]
 gi|301028431|ref|ZP_07191677.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 196-1]
 gi|301644319|ref|ZP_07244321.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 146-1]
 gi|307140351|ref|ZP_07499707.1| ATP-dependent DNA helicase RecG [Escherichia coli H736]
 gi|299878542|gb|EFI86753.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 196-1]
 gi|300317731|gb|EFJ67515.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 175-1]
 gi|300450630|gb|EFK14250.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 116-1]
 gi|301077357|gb|EFK92163.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 146-1]
 gi|315618644|gb|EFU99230.1| ATP-dependent DNA helicase RecG [Escherichia coli 3431]
          Length = 693

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIKVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|205354654|ref|YP_002228455.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207858981|ref|YP_002245632.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224585542|ref|YP_002639341.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|205274435|emb|CAR39467.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710784|emb|CAR35145.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224470070|gb|ACN47900.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|326629792|gb|EGE36135.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 693

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAI 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|170718699|ref|YP_001783891.1| ATP-dependent DNA helicase RecG [Haemophilus somnus 2336]
 gi|168826828|gb|ACA32199.1| ATP-dependent DNA helicase RecG [Haemophilus somnus 2336]
          Length = 693

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 253/690 (36%), Positives = 389/690 (56%), Gaps = 28/690 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M   FL+ +  PL++  GVG   +  L +I            DLLF+ P  + DR     
Sbjct: 1   MGGQFLDAI--PLTSLSGVGAAIAEKLGRI------GLFSLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++  ++  TI G I Q    Q  +R    + L+DGT +I L FF     M KN F  G
Sbjct: 53  IIDLRIDQHATIEG-IVQTCDIQFGRRPVLVVTLSDGTAKIALRFFNFNAGM-KNGFQLG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G+IK+ +    + HP Y I  +++ +     +  +Y+   GL  +  +K+  +A
Sbjct: 111 ARVKAFGEIKRGRFMAEIHHPEYEIIRDNRPLQLAETLTPIYATTEGLKQNTLRKLTEQA 170

Query: 179 LSRLPVLPEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYD 231
           L+ L  +P     +LL +   P   S+ +A  ++H P      E       PA+ RL ++
Sbjct: 171 LALLEKMPL---AELLPRAFNPHDFSLKQAIYVLHRPPPDISLELLEQGKHPAQLRLIFE 227

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           ELLA  +A+  +R   +    +P+  +  + Q  L  +P+ PT +Q+  + +I  D+ + 
Sbjct: 228 ELLAHNLAMQKVRCGSQHFSALPLRYQTALKQNFLDLLPYQPTNAQQRVVAEIEYDLGRS 287

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M+R++QGDVGSGKTLV  +A   A++ G Q  +M P  ILA+QH    +++ +   I 
Sbjct: 288 FPMMRLVQGDVGSGKTLVVALAALTAIDNGKQVALMVPTEILAEQHTANFQRWFEPLGIR 347

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V  +TG +    R+  LE I+ G   +++GTHALFQD +++ +L+LV++DEQHRFGV QR
Sbjct: 348 VGCLTGKVKGKFRQATLEEISQGNIQMVVGTHALFQDDVKFAELVLVVIDEQHRFGVHQR 407

Query: 412 LKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           L L +K       PH L+MTATPIPRTL + +  D+D S I E P GR PI+T+ +   R
Sbjct: 408 LMLREKGKYAGIYPHQLIMTATPIPRTLAMVAYADLDTSIIDELPPGRTPIQTIAVSEER 467

Query: 468 IDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRM 525
             E++ R+    ++E ++AYW+C  I+E +    ++       L +      I +IHGRM
Sbjct: 468 RTEIVARVYNACVNEKRQAYWVCTLIDESEVLEAQAAESIAEDLQKALPVLRIGLIHGRM 527

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GLAQLHQLRGRVGR
Sbjct: 528 KVSEKQEVMRQFKNAELNLLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGR 587

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
           G   S C+L+Y  PLSK S  RL V+++++DGF I+E+DL+ R  GE+LG KQ+G+ +F 
Sbjct: 588 GSTASYCVLMYKSPLSKVSRKRLEVMRSSQDGFFISEQDLEIRGPGEVLGTKQTGVAEFK 647

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           +A       +L   +  A+ ++T+ P L  
Sbjct: 648 VADLIRDRKMLPTVQHYARLLITRSPKLAD 677


>gi|168241924|ref|ZP_02666856.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194447704|ref|YP_002047775.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194406008|gb|ACF66227.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205338824|gb|EDZ25588.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 693

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTTEGRQAYWVCTLIEESGLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|329897890|ref|ZP_08272240.1| ATP-dependent DNA helicase RecG [gamma proteobacterium IMCC3088]
 gi|328921016|gb|EGG28435.1| ATP-dependent DNA helicase RecG [gamma proteobacterium IMCC3088]
          Length = 694

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/672 (38%), Positives = 378/672 (56%), Gaps = 24/672 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           +P+S   GVG K +  L+ +         +  DL FY P  + DR     I  + +   V
Sbjct: 16  SPISQLSGVGPKLAEKLATL------GLHQVKDLWFYLPLRYQDRTRLTPIGALQDGSDV 69

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            I G + + ++  L +RR   + L DGTG + L FF+  +   +    +G  +   G+++
Sbjct: 70  VIEGEV-RLATVTLGRRRSLVVKLQDGTGTLVLRFFH-FSRAQQQQLKQGLTLRCFGQVR 127

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           +  N   MVHP Y            + A+Y   TG+    ++KI V +L  L V P    
Sbjct: 128 RGANGFEMVHPEYRRVEEGAAMEEALTAIYPTITGIGQTTWRKICVASLQVLTVNPP--- 184

Query: 191 KDLLQKKSFPSIA--EAFNIIHNPRKAKDFEWTS------PARERLAYDELLAGQIALLL 242
            +LL  +    I   +A  I+H P    D   ++      PA+ RLA +EL+A +I+L  
Sbjct: 185 DELLPHEQTLGIGLVQAIKILHQP--PPDVSLSALANKQHPAQLRLALEELVAHRISLGE 242

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R    +     I    ++    L+  PF  T +Q+  I +I  D+++   MLR+LQGDV
Sbjct: 243 LRTLQTQHQAPQIPYREELTAAFLKAQPFQATGAQQRVIAEIGHDLTRPTPMLRLLQGDV 302

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKTLVA  A   A +AG Q  +MAP  +LA+QH+   +++  +++  +  ++G     
Sbjct: 303 GAGKTLVAAAAALQAAQAGYQVAVMAPTELLAEQHWRNFERWFGDSKFKLAWLSGKTKGK 362

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   L  IA  + +++IGTHALFQ  +++  L LVI+DEQHRFGV+QRL L +K  A  
Sbjct: 363 KREATLAMIATQEVNMVIGTHALFQADVEFKHLGLVIIDEQHRFGVEQRLTLARKGKALR 422

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH L+MTATPIPR+L + +  D+D S I E P GR+ I TV+I  +R   VIER+     
Sbjct: 423 PHQLVMTATPIPRSLSMVAYADLDCSIIDELPPGRQAISTVLIDSSRRASVIERVAHACR 482

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           EG++AYW+C  IEE ++   ++      SL        I +IHGR+   +KES+M SF  
Sbjct: 483 EGRQAYWVCTLIEENEQLAAQAAEAVSESLQTQLADLRIGLIHGRLKSTEKESIMASFAA 542

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L+Y  P
Sbjct: 543 GHLDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTIASHCVLMYQSP 602

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RL VLK+++DGF IAE+DL  R  GE+LG +Q+G+  F +A+  LH+ LL+ A
Sbjct: 603 LSQTGKARLRVLKDSQDGFYIAEQDLLLRGPGELLGTRQTGLMAFRVAELPLHEDLLDSA 662

Query: 660 RKDAKHILTQDP 671
              A  ++ Q P
Sbjct: 663 AAIADDLMQQRP 674


>gi|315296995|gb|EFU56275.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 16-3]
          Length = 693

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|117625924|ref|YP_859247.1| ATP-dependent DNA helicase RecG [Escherichia coli APEC O1]
 gi|237703446|ref|ZP_04533927.1| ATP-dependent DNA helicase RecG [Escherichia sp. 3_2_53FAA]
 gi|91074744|gb|ABE09625.1| ATP-dependent DNA helicase RecG [Escherichia coli UTI89]
 gi|115515048|gb|ABJ03123.1| ATP-dependent DNA helicase RecG [Escherichia coli APEC O1]
 gi|226902710|gb|EEH88969.1| ATP-dependent DNA helicase RecG [Escherichia sp. 3_2_53FAA]
          Length = 704

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 21  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 74

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 75  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 132

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 133 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 190

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 191 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 248

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 249 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 308

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   AV  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 309 VGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 368

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 369 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 428

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 429 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 488

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 489 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 548

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 549 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 608

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 609 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 668

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 669 IPEVQRLARHIHERYP 684


>gi|30065072|ref|NP_839243.1| ATP-dependent DNA helicase RecG [Shigella flexneri 2a str. 2457T]
 gi|56480396|ref|NP_709432.2| ATP-dependent DNA helicase RecG [Shigella flexneri 2a str. 301]
 gi|110807670|ref|YP_691190.1| ATP-dependent DNA helicase RecG [Shigella flexneri 5 str. 8401]
 gi|30043333|gb|AAP19054.1| DNA helicase [Shigella flexneri 2a str. 2457T]
 gi|56383947|gb|AAN45139.2| DNA helicase [Shigella flexneri 2a str. 301]
 gi|110617218|gb|ABF05885.1| ATP-dependent DNA helicase recG [Shigella flexneri 5 str. 8401]
 gi|281603015|gb|ADA75999.1| ATP-dependent DNA helicase recG [Shigella flexneri 2002017]
 gi|313647473|gb|EFS11923.1| ATP-dependent DNA helicase RecG [Shigella flexneri 2a str. 2457T]
 gi|332749892|gb|EGJ80304.1| ATP-dependent DNA helicase RecG [Shigella flexneri K-671]
 gi|332750610|gb|EGJ81018.1| ATP-dependent DNA helicase RecG [Shigella flexneri 4343-70]
 gi|332751321|gb|EGJ81724.1| ATP-dependent DNA helicase RecG [Shigella flexneri 2747-71]
 gi|332764146|gb|EGJ94383.1| ATP-dependent DNA helicase RecG [Shigella flexneri 2930-71]
 gi|332996122|gb|EGK15749.1| ATP-dependent DNA helicase RecG [Shigella flexneri VA-6]
 gi|332997250|gb|EGK16866.1| ATP-dependent DNA helicase RecG [Shigella flexneri K-218]
 gi|333012920|gb|EGK32297.1| ATP-dependent DNA helicase RecG [Shigella flexneri K-304]
          Length = 693

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|289662159|ref|ZP_06483740.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 717

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/708 (36%), Positives = 389/708 (54%), Gaps = 52/708 (7%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           PS      APLS+  GVG K +  F ++ I           DL ++ P  + DR     I
Sbjct: 9   PSLAVTGQAPLSSLPGVGPKVADKFAARGI-------LSVQDLWWHLPLRYEDRTRLTTI 61

Query: 62  SEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118
           +++       I G +      F+    RP  ++ ++D + G + L FF+ +   +   F 
Sbjct: 62  AQLQSGVPAQIEGRVDAVERGFRF---RPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FA 117

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176
            G ++ V G  K  ++   +VHP Y +    +D      ++ VY +  G+     +K+I 
Sbjct: 118 VGTRVRVFGTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177

Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225
           +AL RLP       + P W     LQ +  PS+  A   +H P    D         PA+
Sbjct: 178 QALERLPPEAALELLPPHW-----LQDEQLPSLRAALLTMHRPPVGTDPQQLLAGAHPAQ 232

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +RLA +ELLA Q++L   R   ++     +   G + Q++   +PF  T +Q+   + I 
Sbjct: 233 QRLAIEELLAHQLSLRRQRIALQRFHAPMLPGNGTLVQQLRSALPFQLTGAQQRVFEQIA 292

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
           +D++Q + MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + 
Sbjct: 293 RDLAQPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRGWL 352

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +   + +  + G +    R  A+  +A GQA +++GTHAL QD++ ++ L L I+DEQHR
Sbjct: 353 EPLGVRIVWLAGKVTGKARVAAMAEVASGQAQLVVGTHALMQDAVVFHDLALAIIDEQHR 412

Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           FGV QRL L  K  A    PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+
Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTI 472

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------------FRSVVERF 507
           ++   R  E++ER++V  +EG++AYW+C  IEE +E                 ++    F
Sbjct: 473 VLSAERRPELVERIRVACAEGRQAYWVCTLIEESEEPEKGAQGQYSGPPRIEAQAAEVTF 532

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +L        +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIE
Sbjct: 533 EALSAQLPGVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIE 592

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           NAE  GLAQLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+
Sbjct: 593 NAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLE 652

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            R  GE+LG +Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 653 LRGPGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLEEAPEIA 700


>gi|253690573|ref|YP_003019763.1| ATP-dependent DNA helicase RecG [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251757151|gb|ACT15227.1| ATP-dependent DNA helicase RecG [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 693

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 255/692 (36%), Positives = 392/692 (56%), Gaps = 38/692 (5%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   LN    PLST  GVG   +  L+++       ET   DLL + P  + DR +   
Sbjct: 1   MKGRLLN--TQPLSTLTGVGASQAAKLARL-----GLET-VQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      T+ G I + +      RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGDLLPGMYATVEGEILR-NDITFGSRRMLTCQISDGSGMLTMRFFNFNAAM-KNSLAPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFH--NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++T  G+IK+ K    ++HP Y     N+Q      +  VY    G+     +K+  +A
Sbjct: 111 QRVTAYGEIKRGKIGAEIIHPEYRVQGDNTQVELQESLTPVYPSTEGIRQATLRKLTDQA 170

Query: 179 LSRLP------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARE 226
           L  L       +LPE + + L+      S+ +A   +H P    D + +       PA++
Sbjct: 171 LELLAANHIDELLPESLSRSLI------SLPDALRTLHRP--PPDMQLSELEHGKHPAQQ 222

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286
           RL  +ELLA  +++L +R   ++    P+  +  + Q++L  +PF+PT++QE  + +I  
Sbjct: 223 RLIMEELLAHNLSMLAVRAGEQRHKASPLQAQDGLKQRLLAALPFNPTQAQERVVAEIEA 282

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           DM++   M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +
Sbjct: 283 DMAKDFPMMRLVQGDVGSGKTLVAALAALRAIANGKQVALMAPTELLAEQHAHNFRQWFE 342

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              + V  + G      R+   + IA+GQ  +++GTHA+FQ  +++  L LVI+DEQHRF
Sbjct: 343 PLGLEVGWLAGKQKGKARQAQQDAIANGQVSMVVGTHAIFQQQVKFNGLALVIIDEQHRF 402

Query: 407 GVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           GV QRL L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV 
Sbjct: 403 GVHQRLALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVA 462

Query: 463 IPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520
           IP +R +++IER+      EG++AYW+C  IEE      ++       L     +  + +
Sbjct: 463 IPDSRRNDIIERVNSACQQEGRQAYWVCTLIEESDLLEAQAAEATSEELKAALPNLKVGL 522

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGRM   +K++VM +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLR
Sbjct: 523 VHGRMKAQEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLR 582

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG   S C+LLY  P+SK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G
Sbjct: 583 GRVGRGAVASHCVLLYKTPMSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTG 642

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
             +F +A       L+   ++ A+H+    P+
Sbjct: 643 NAEFKVADLLRDQDLIPQVQRVARHLHEHYPE 674


>gi|261341740|ref|ZP_05969598.1| hypothetical protein ENTCAN_08218 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316107|gb|EFC55045.1| ATP-dependent DNA helicase RecG [Enterobacter cancerogenus ATCC
           35316]
          Length = 693

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/677 (37%), Positives = 380/677 (56%), Gaps = 28/677 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR    KI ++      T
Sbjct: 10  PLNSLTGVGAAQSGKLAKI------GLHTVQDLLLHLPLRYEDRTQLYKIGDLLPAIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DGTG +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSMPELQETLTPVYPTTEGIKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK---DFE-WTSPARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P       D E  T PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLIDLESGTHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++   ++  K+L ++PF PT +Q     +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSQRDELKDKLLASLPFKPTGAQARVTAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRAWFAPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGLQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GYHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             + EG++AYW+C  IEE      ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMQEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LLIATTVIEVG+DV +AS++I+EN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELHLLIATTVIEVGVDVPNASLMIVENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKAPLSKTAQMRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLMRDQAM 657

Query: 656 LEIARKDAKHILTQDPD 672
           +   ++ A+HI  + P+
Sbjct: 658 IPEVQRLARHIHERYPE 674


>gi|218697373|ref|YP_002405040.1| ATP-dependent DNA helicase RecG [Escherichia coli 55989]
 gi|218354105|emb|CAV00667.1| ATP-dependent DNA helicase [Escherichia coli 55989]
          Length = 693

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIKVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|186477271|ref|YP_001858741.1| ATP-dependent DNA helicase RecG [Burkholderia phymatum STM815]
 gi|184193730|gb|ACC71695.1| ATP-dependent DNA helicase RecG [Burkholderia phymatum STM815]
          Length = 740

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 253/662 (38%), Positives = 378/662 (57%), Gaps = 29/662 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I E+    I    G +  +      +R+    + +D  
Sbjct: 67  TRDIDLVLHLPMRYEDETSLTPIGELLPGDIAQTEGVVYDNEIAYRPRRQLLVKMRDDAG 126

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G ++ V G ++     + MVHP      + D + PL +A
Sbjct: 127 DELILRFLNFYGSQVKQMSV-GVRLRVRGDVRGGFFGMEMVHPAV---RAVDEDTPLPQA 182

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R  LP +LPE IE+  L+    P++ +A   +H+P
Sbjct: 183 LTPVYPSTAGVSQAYLRKAIDNALARTSLPELLPEPIERQYLRPLEVPALMDAVRTLHHP 242

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-----EGKIAQ 263
               D     + T PA  R+ ++ELLA Q++L    ++ +      +       E  +  
Sbjct: 243 NSHSDETALIDGTHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRAATDETSLVA 302

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++L+ +PFS T +Q+    +I QD++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 303 RLLKTLPFSLTGAQQRVCGEIAQDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 362

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTH
Sbjct: 363 AAMMAPTEILAEQHARKLRGWLEPLGVTVAWLAGSLKTKEKRSAIEAAALGTAQLVIGTH 422

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRT
Sbjct: 423 AIIQDAVEFARLGLVIVDEQHRFGVEQRLALRAKAQNAADGARDFQPHQLMMSATPIPRT 482

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+++S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE
Sbjct: 483 LAMTYYADLEVSTIDELPPGRTPILTKLVSDGRRDEVIGRVREAALTGRQVYWVCPLIEE 542

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++ ++K SVMD+F     +LL+ATTVIEV
Sbjct: 543 SETLQLQTAVETYETLVAALPELRVGLVHGRLTPVEKASVMDAFGRNEVQLLVATTVIEV 602

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS  +  RL  ++ 
Sbjct: 603 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARARLQTMRE 662

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR+ A  +L Q P++
Sbjct: 663 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPAREAATTLLAQYPNV 722

Query: 674 TS 675
            +
Sbjct: 723 VT 724


>gi|209921125|ref|YP_002295209.1| ATP-dependent DNA helicase RecG [Escherichia coli SE11]
 gi|209914384|dbj|BAG79458.1| DNA helicase RecG [Escherichia coli SE11]
 gi|324019691|gb|EGB88910.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 117-3]
          Length = 693

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|288932986|ref|YP_003437045.1| ATP-dependent DNA helicase RecG [Klebsiella variicola At-22]
 gi|290511780|ref|ZP_06551148.1| ATP-dependent DNA helicase RecG [Klebsiella sp. 1_1_55]
 gi|288887715|gb|ADC56033.1| ATP-dependent DNA helicase RecG [Klebsiella variicola At-22]
 gi|289775570|gb|EFD83570.1| ATP-dependent DNA helicase RecG [Klebsiella sp. 1_1_55]
          Length = 693

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI            DLL + P  + DR +   I+E+      T
Sbjct: 10  PLSSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIAELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  +S+     RR     ++DGTG +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NSNITFGGRRMLTCQISDGTGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DMSTPELQETLTPVYPTTEGIKQATLRKLTDQALELLETCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P  +           PA++RL  +ELLA  +++L
Sbjct: 180 SELLPPELAQ--GMMSLPEALRTLHRPPPSLQLSELESGKHPAQQRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++   +P+     +  ++L ++PF PT +Q     +I  DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHALPLGANDTLKNQLLASLPFKPTGAQARVTAEIEHDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V  + G    
Sbjct: 298 VGSGKTLVAALAAVRAIAHGKQVALMAPTELLAEQHANNFRSWFEPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA G+  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGEVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477

Query: 478 VLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             + EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGEMHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPDVQRIARHIHERYP 673


>gi|268592266|ref|ZP_06126487.1| ATP-dependent DNA helicase RecG [Providencia rettgeri DSM 1131]
 gi|291312043|gb|EFE52496.1| ATP-dependent DNA helicase RecG [Providencia rettgeri DSM 1131]
          Length = 693

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 253/680 (37%), Positives = 389/680 (57%), Gaps = 36/680 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L++  G+G   S  + KI      N  +  DLL + P  + D     +I ++      TI
Sbjct: 11  LTSLHGIGASQSEKMRKI----GLNTVQ--DLLLHFPLRYEDHTRLYQIKDLLPGTTATI 64

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
           TG I Q +     ++R    L++DGTG +TL FF     M KN   EG+++T  G++++ 
Sbjct: 65  TGEILQ-TKVVFGRKRMMTCLISDGTGNLTLRFFNFSASM-KNNLAEGKQVTAYGEVRRG 122

Query: 133 KNRIIMVHPHYIFHNSQDV-NFPLIE---AVYSLPTGLSVDLFKKIIVEALSRL------ 182
                ++HP Y    SQD  N  L E    VY    G+     +K++ +AL  L      
Sbjct: 123 NTGPEIIHPEYKV--SQDTSNISLQENLTPVYPTTEGVRQATLRKVMEQALRLLDSGKIK 180

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQI 238
            +LPE + + ++      S+ +A  ++HNP          +   PA++RL  +ELLA  +
Sbjct: 181 ELLPEELSRGMI------SLPDAIRLLHNPPPNVALIELEKGHHPAQKRLILEELLAHHL 234

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           ++L +R   ++    P+   G++  ++L  +PFSPT +Q   + +I  D+++   M+R++
Sbjct: 235 SMLAIRAGNERLYAEPLTTSGQLKSQLLAQLPFSPTNAQNRVVSEIEADLAKDAPMMRLI 294

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A+E G Q  +MAP  ILA+QH    K++ +   I V  + G 
Sbjct: 295 QGDVGSGKTLVAALAAVCAIENGKQVALMAPTEILAEQHANTFKQWLEPLGIKVGWLAGK 354

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R+   + IA G+  +++GTHA+FQ+ + +  L LVI+DEQHRFGV QRL L +K 
Sbjct: 355 QKGKARQAQQDAIASGEVAMVVGTHAIFQEQVSFKALGLVIIDEQHRFGVHQRLALREKG 414

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                 PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R +++IER
Sbjct: 415 EQQGYHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRNDIIER 474

Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           ++   + EG++AYW+C  IE+ +    ++       L        + ++HGRM   +K+S
Sbjct: 475 VRQACIEEGRQAYWVCTLIEDSELLEAQAAQVTSEELALALPELKVGLVHGRMKPAEKQS 534

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M +FK    +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S C
Sbjct: 535 IMAAFKRNEIQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAIASHC 594

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY  PL+  +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A     
Sbjct: 595 VLLYKTPLTHTAKQRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRD 654

Query: 653 DSLLEIARKDAKHILTQDPD 672
             +L   ++ A+HI    P+
Sbjct: 655 QYMLPEVQRLARHIQQNYPE 674


>gi|91205818|ref|YP_538173.1| ATP-dependent DNA helicase RecG [Rickettsia bellii RML369-C]
 gi|91069362|gb|ABE05084.1| ATP-dependent DNA helicase RecG [Rickettsia bellii RML369-C]
          Length = 740

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 264/719 (36%), Positives = 386/719 (53%), Gaps = 76/719 (10%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+P+  F  + +     L ++   G +N     DLLFY P S+  +   P ++E+ E  
Sbjct: 9   LFSPIKAFINIREDTIAALKRL---GISN---IRDLLFYSPVSYQTKTLSPNLTEVREGD 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           ++ +   I +  +   +  +P +I  ++ TG + L+FF++    + N    G K T++GK
Sbjct: 63  LIQVE-VIIESVNLPNKSHQPLRITASNDTGSLLLVFFHKPPPFIFNKLKVGSKHTISGK 121

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPV- 184
           ++   + + + HP +I      VN  L   +E +YSL   +S       I++A+      
Sbjct: 122 VQFFDHHLQISHPEFI------VNPKLTKELEPIYSLTYLISNKQLYSYIIKAIDMFEEK 175

Query: 185 --------LPEWIEKDLLQKKSFPSI---AEAFNIIHN-----------PRKAKDFEWTS 222
                   + E++++ L   K   ++    EAF  +             P+  K      
Sbjct: 176 CKNVQDKEVKEYLDEVLESLKGVHALRHCEEAFMPMRQSSDVKSLISGLPQPLKGLRNDD 235

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             ++ LA  EL+A QI+L   R Q   + G       ++   IL ++ F  T  Q+  I+
Sbjct: 236 VHKKSLATKELIANQISLFKARTQIVGKHGNIYPKAKQVQTNILNSLGFELTSYQQQVIE 295

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I +D +    M+R+LQGDVGSGKTLVAL+ M      G QA +MAP  +LA QHYEF  
Sbjct: 296 EIEKDQASGIEMMRLLQGDVGSGKTLVALLTMTNVAAVGFQATLMAPTDLLANQHYEFFV 355

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +  +NT I + ++TG +  + R+  + ++ +G+  I+IGTHALFQ+ + + KL  +++DE
Sbjct: 356 RALKNTDIKIGLLTGKILGSARKNIMMQLENGEIDILIGTHALFQEKVNFKKLGYIVIDE 415

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           QHRFGVQQRL L  K   P VL+MTATPIPR+L LT  GD+ ISK+  KP  R PI T  
Sbjct: 416 QHRFGVQQRLDLINKGINPDVLVMTATPIPRSLALTMFGDMTISKLQGKPKNRLPIATNT 475

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-------------------------- 496
           + IN+I+ ++E +   L  G++ YWICP IE+ K                          
Sbjct: 476 MSINKIEHILEAINKKLVAGERIYWICPLIEQAKISDVILRLDCGIQKTANNANNFDWIP 535

Query: 497 ----------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                     +S    V+ RFNS+   +     IIHG+M +  K++VM  FK+G  K+L+
Sbjct: 536 WRGHGMTIEADSLLMDVMNRFNSVENIYKGCTGIIHGKMKNEQKDAVMKQFKDGEIKILV 595

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSY 605
           ATTVIEVGIDV +A++IIIENAE FGLAQLHQLRGRVGRG   S CILLY+P  L K   
Sbjct: 596 ATTVIEVGIDVPEATLIIIENAERFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLGKVGR 655

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            R  ++K T DGF IAE+DLK R  GEILG+KQSG   F  A       LL  A K A+
Sbjct: 656 GRFEIMKQTNDGFYIAEQDLKLRGSGEILGVKQSGEMDFFFADLARDYDLLLKANKFAE 714


>gi|331659988|ref|ZP_08360926.1| ATP-dependent DNA helicase RecG [Escherichia coli TA206]
 gi|331053203|gb|EGI25236.1| ATP-dependent DNA helicase RecG [Escherichia coli TA206]
          Length = 693

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|126658566|ref|ZP_01729713.1| DNA recombinase [Cyanothece sp. CCY0110]
 gi|126620153|gb|EAZ90875.1| DNA recombinase [Cyanothece sp. CCY0110]
          Length = 819

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/654 (36%), Positives = 391/654 (59%), Gaps = 25/654 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99
           DLLFY+P   ID   +  I+ +     VTI G + + + F   K +    ++++L D TG
Sbjct: 150 DLLFYYPRDHIDYARQVTINNLVAGETVTIVGTVKRCNCFTSPKNKKLSIFELILRDHTG 209

Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS--- 148
           +I L  F+  T        E  K ++  G  +  +G +K+ +  I + +P     +S   
Sbjct: 210 QIKLNRFFAGTRFTSRGWQERQKRIYPLGSTVAASGLVKQNRYGITLDNPEIEVLDSVGS 269

Query: 149 --QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
             + +    +  VY L  G+  DL +K I+ +L  +  L + + + L ++     + EA 
Sbjct: 270 SIESIKIGRVLPVYPLTEGVGADLIRKAIIVSLEAIKQLRDPLPRVLREQYGLMGLKEAI 329

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI--GIPINVEGKIAQK 264
           + IH P  +   E  + AR RL +DE    Q+  L  R+Q +K+I        +G++ ++
Sbjct: 330 SNIHFPETS---ELLAHARRRLVFDEFFYLQLGFL-QRRQEQKQIHNSTVFTPKGRLIEQ 385

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
               +PFS T +Q+  I +IL+D++    M R++QGDVG+GKT+VA+ A+ AA+++G QA
Sbjct: 386 FDNILPFSLTNAQQRVINEILEDLNSVTPMNRLVQGDVGAGKTIVAVFAVLAALQSGYQA 445

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  +LA+QHY  +  +     + VE++TG+  +A R +   ++  G+  +++GTHA
Sbjct: 446 ALMAPTEVLAEQHYRKLIPWFNQLYLPVELLTGSTKKAKREEIHRQLITGELPLLVGTHA 505

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L QD++ + KL LV++DEQHRFGVQQR KL  K  +PHVL MTATPIPRTL LT  GD+D
Sbjct: 506 LIQDTVNFQKLGLVVIDEQHRFGVQQRAKLLAKGKSPHVLTMTATPIPRTLALTLHGDLD 565

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           +S+I E P GR+ I+T ++      +  + ++  +++G++ Y I P IEE ++ + ++ V
Sbjct: 566 VSQIDELPPGRQAIQTTVLTGKERTQAYDLIRREVAQGRQVYIIFPMIEESEKLDVKAAV 625

Query: 505 ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           E    L +      +I ++HGRMS ++K+ V+ +F++    ++++TTVIEVG+DV +A++
Sbjct: 626 EEHKKLSDKVFPDFNIGLLHGRMSSVEKDGVLTAFRDNKYHIIVSTTVIEVGVDVPNATV 685

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++IENAE FGL+QLHQLRGRVGRG   S C+L+     + ++  RLSVL+ ++DGF I+E
Sbjct: 686 MLIENAERFGLSQLHQLRGRVGRGSHKSYCLLMSSSK-TPDARQRLSVLEQSQDGFFISE 744

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            DL+ R  G +LG +QSG+P F +A       +LE+AR  A+ I+  D +L S+
Sbjct: 745 MDLRFRGPGTVLGTRQSGLPDFALASLIEDQEVLELARVAAEKIIAADKNLGSL 798


>gi|309784367|ref|ZP_07679006.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae 1617]
 gi|308927874|gb|EFP73342.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae 1617]
          Length = 693

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIECDMALNVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|206577391|ref|YP_002235980.1| ATP-dependent DNA helicase RecG [Klebsiella pneumoniae 342]
 gi|206566449|gb|ACI08225.1| ATP-dependent DNA helicase RecG [Klebsiella pneumoniae 342]
          Length = 693

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI            DLL + P  + DR +   I+E+      T
Sbjct: 10  PLSSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIAELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  +S+     RR     ++DGTG +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NSNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DMSTPELQETLTPVYPTTEGIKQATLRKLTDQALELLETCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P  +           PA++RL  +ELLA  +++L
Sbjct: 180 SELLPPELAQ--GMMSLPEALRTLHRPPPSLQLSELESGKHPAQQRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++   +P+     +  ++L ++PF PT +Q     +I  DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHALPLGANDTLKNQLLASLPFKPTGAQARVTAEIEHDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V  + G    
Sbjct: 298 VGSGKTLVAALAAVRAIAHGKQVALMAPTELLAEQHANNFRSWFEPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA G+  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGEVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477

Query: 478 VLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             + EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGEMHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPDVQRIARHIHERYP 673


>gi|323189441|gb|EFZ74722.1| ATP-dependent DNA helicase RecG [Escherichia coli RN587/1]
          Length = 693

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGSRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSTNDALKNKLLAALPFKPTGAQVRVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   AV  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMT 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|7839553|gb|AAF70323.1|AF260247_1 RecG [Vibrio cholerae]
          Length = 692

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 260/675 (38%), Positives = 388/675 (57%), Gaps = 26/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHN---SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + ++HP Y F     + DV  P +  VY    GL     + +  +AL  L    + 
Sbjct: 121 GNQGLEIIHPDYKFFTPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALVLLEKSAVQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L 
Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQIRLIMEELLAQNLSMLA 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+++ + M+R++QGDV
Sbjct: 238 IRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLAKPHPMMRLVQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +   
Sbjct: 298 GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGK 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K     
Sbjct: 358 ARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQG 417

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P G  PI+TV IP  + DE++ER++  
Sbjct: 418 AYPHQLIMTATPIPRTLGMTAYADLETSVIDELPPGGTPIQTVAIPDTKRDEIVERIRHA 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             +EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +
Sbjct: 478 CFNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQA 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK     L +ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+
Sbjct: 538 FKTIELHLFVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 598 HAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLV 657

Query: 657 EIARKDAKHILTQDP 671
              ++ A+HI  + P
Sbjct: 658 PQVQRIARHIHERYP 672


>gi|152978695|ref|YP_001344324.1| ATP-dependent DNA helicase RecG [Actinobacillus succinogenes 130Z]
 gi|150840418|gb|ABR74389.1| ATP-dependent DNA helicase RecG [Actinobacillus succinogenes 130Z]
          Length = 693

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/677 (37%), Positives = 385/677 (56%), Gaps = 24/677 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           PL+T  GVG   +  LS+I IN          DLLF+ P  + DR +   I++I  ++  
Sbjct: 10  PLTTLSGVGTAIAAKLSRIGIN-------NLQDLLFHLPIRYEDRTHITPIADIRPDQYA 62

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           TI G I Q    Q  +R    + L+DG+ +I L FF     M +N F  G ++   G+IK
Sbjct: 63  TIEG-IVQTCDVQFGRRPILTVSLSDGSSKIMLRFFNFNAGM-RNSFQIGARVKAFGEIK 120

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPE 187
           + +    + HP Y I  ++Q +     +  +Y+   GL     +K+  +AL+ L  V   
Sbjct: 121 RGRFMAEIHHPEYQIIRDNQPIQLEETLTPIYAATEGLKQASLRKLTEQALALLNKVQLT 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLM 243
            I  D      F S+ +A + +H P      E       PA+ RL ++ELLA  +A+  +
Sbjct: 181 EILPDAFNPYPF-SLKDALHFLHRPPPDVSLEMLEKGQHPAQVRLIFEELLAHNLAMQKV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   ++   +P+  +  + Q+ L  +PF PT +Q     DI +D++Q   M+R++QGDVG
Sbjct: 240 RVGTQQHYAVPLVHQTDLKQRFLAQLPFRPTNAQLRVTADIERDLAQSYPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A  A ++ G Q  +MAP  ILA+QH E  +++ +   I V  + G +    
Sbjct: 300 SGKTLVAALAAIAVIDNGKQVALMAPTEILAEQHAENFRRWLEPFNIRVGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R+  L  I  G+  +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RQAVLTEIQRGEVQMVVGTHALFQEEVKFADLALVIIDEQHRFGVHQRLMLREKGENSGI 419

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KVV 478
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++ R+    
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSVIDELPPGRTPITTVVVSEERRAEIVARVHNAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +E ++AYW+C  IEE +    ++       L +      I ++HGRM   +K+ +M  F
Sbjct: 480 TNEKRQAYWVCTLIEESEVLEAQAAEATAEDLQKALPHLRIGLVHGRMKPAEKQEIMARF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y 
Sbjct: 540 KAAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +F +A       ++ 
Sbjct: 600 PPLGKISQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAEFKVANLMRDRRMIP 659

Query: 658 IARKDAKHILTQDPDLT 674
             +  AK ++ + PD+ 
Sbjct: 660 TVQHYAKQLIVKHPDIA 676


>gi|218691935|ref|YP_002400147.1| ATP-dependent DNA helicase RecG [Escherichia coli ED1a]
 gi|218429499|emb|CAR10322.1| ATP-dependent DNA helicase [Escherichia coli ED1a]
          Length = 693

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   AV  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRIDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMT 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVANLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|332995097|gb|AEF05152.1| ATP-dependent DNA helicase RecG [Alteromonas sp. SN2]
          Length = 690

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 255/656 (38%), Positives = 376/656 (57%), Gaps = 37/656 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG K +  L+KI            D+LF+ P  + DR     ++E      V+
Sbjct: 8   PITALKGVGAKVAEKLAKI------GLFTLQDVLFHLPLRYEDRTRVYSVAECRPFTHVS 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + +  Q  K+R   + L+DGTG ITL FF+    + + +   G  I   G+++ 
Sbjct: 62  VQGEV-KSADIQYGKKRMLVVKLSDGTGTITLRFFHFGA-VQRTMMTPGNLIRCFGEVRT 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVEALSRLP---- 183
            K  I M+HP +      D + PL    +  VY    G+     + +  +AL  L     
Sbjct: 120 GKWGIEMMHPEFKL---IDEDAPLEAESLTPVYPTTEGVKQLTLRNLTDQALKMLDKGAL 176

Query: 184 --VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQ 237
             +LPE +  D +      S+ EA + +H P    D     E   PA+ RL  +ELL+  
Sbjct: 177 ADLLPEGMYSDQI------SLNEALHAVHRPAPDTDVHEMEEGLHPAQYRLILEELLSHH 230

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +++L +RK    + GI I V+  + +K+L  +PFSPT +Q+  + DI QDM     M+R+
Sbjct: 231 LSVLKVRKLSDAQPGISIKVDKPLIEKMLAQLPFSPTGAQQRVVADIQQDMQHPRPMMRL 290

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKTLVA +A  +A+ AG Q  +MAP  +LA+QH    +++     I +  + G
Sbjct: 291 VQGDVGSGKTLVAALAALSAIGAGHQVALMAPTELLAEQHANNFREWFAPLGIEIGWLAG 350

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL--- 414
            +    R + L R+  G   +++GTHA+FQ+S+ Y +L LVIVDEQHRFGV QRL L   
Sbjct: 351 KLKGKARTEVLARLESGDVQMLVGTHAIFQESVNYQQLALVIVDEQHRFGVHQRLALRDK 410

Query: 415 -TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV++P +R  +VIE
Sbjct: 411 GEQQGRYPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVVLPDSRRGDVIE 470

Query: 474 RLKVVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531
           R++    E G++AYW+C  I+E +    ++  +    L       ++ ++HGR+   +K 
Sbjct: 471 RVRTACKENGRQAYWVCTLIDESEVLECQAAEDAAVILRTALPELNVGLVHGRLKPAEKL 530

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            VM  FK G   LL+ATTVIEVG+DV +ASI+IIEN E  GLAQLHQLRGRVGRG   S 
Sbjct: 531 QVMADFKAGELDLLVATTVIEVGVDVPNASIMIIENPERLGLAQLHQLRGRVGRGAVESQ 590

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           C+L+Y  PLSK +  RL+VL+ + DGF IA+ DL+ R  GE +G +Q+GM +  IA
Sbjct: 591 CVLMYQSPLSKTATQRLTVLRESNDGFYIAQRDLEIRGPGEFMGTRQTGMAELKIA 646


>gi|16762566|ref|NP_458183.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144055|ref|NP_807397.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213425216|ref|ZP_03357966.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213855784|ref|ZP_03384024.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25290832|pir||AE0969 ATP-dependent DNA helicase (EC 3.6.1.-) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504871|emb|CAD03249.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139691|gb|AAO71257.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 693

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHTQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|168464946|ref|ZP_02698838.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195632480|gb|EDX50964.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 693

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRSWFAPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|215488947|ref|YP_002331378.1| ATP-dependent DNA helicase RecG [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967979|ref|ZP_07782190.1| ATP-dependent DNA helicase RecG [Escherichia coli 2362-75]
 gi|215267019|emb|CAS11464.1| ATP-dependent DNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|312287238|gb|EFR15147.1| ATP-dependent DNA helicase RecG [Escherichia coli 2362-75]
          Length = 693

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGSRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   AV  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRIDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMT 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|261823689|ref|YP_003261795.1| ATP-dependent DNA helicase RecG [Pectobacterium wasabiae WPP163]
 gi|261607702|gb|ACX90188.1| ATP-dependent DNA helicase RecG [Pectobacterium wasabiae WPP163]
          Length = 693

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/692 (36%), Positives = 392/692 (56%), Gaps = 38/692 (5%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   LN    PLST  GVG   +  L+++       ET   DLL + P  + DR +   
Sbjct: 1   MKGRLLN--TQPLSTLAGVGASQAAKLARL-----GLET-VQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      T+ G I + +      RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGDLLPGMYATVEGEILR-NDITFGSRRMLTCQISDGSGMLTMRFFNFSAAM-KNSLAPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++T  G+IK+ K    ++HP Y +  +S  V     +  VY    G+     +K+  +A
Sbjct: 111 QRVTAYGEIKRGKIGAEIIHPEYRVQGDSTQVELQESLTPVYPSTEGIRQATLRKLTDQA 170

Query: 179 LSRLP------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARE 226
           L  L       +LPE + + L+      S+ +A   +H P    D + T       PA++
Sbjct: 171 LDLLAANHIDELLPESLSRSLI------SLPDALRTLHRP--PPDMQLTELEHGKHPAQQ 222

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286
           RL  +ELLA  +++L +R   ++    P+  +  + Q++L  +PF+PT++Q+  + +I  
Sbjct: 223 RLIMEELLAHNLSMLAVRAGEQRHKASPLPTKDSLKQQLLAALPFTPTQAQDRVVAEIET 282

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           DM++   M+R++QGDVGSGKTLVA +A   A+ +G Q  +MAP  +LA+QH    +++ +
Sbjct: 283 DMAKDFPMMRLVQGDVGSGKTLVAALAALRAIASGKQVALMAPTELLAEQHAHNFRQWFE 342

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              + V  + G      R+   + IA+GQ  +++GTHA+FQ  +++  L LVI+DEQHRF
Sbjct: 343 PLGLEVGWLAGKQKGKARQAQQDAIANGQVSMVVGTHAIFQQQVKFNGLALVIIDEQHRF 402

Query: 407 GVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           GV QRL L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV 
Sbjct: 403 GVHQRLALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVA 462

Query: 463 IPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520
           IP +R  ++IER+      EG++AYW+C  IEE      ++       L     +  + +
Sbjct: 463 IPDSRRSDIIERVNSACQQEGRQAYWVCTLIEESDLLEAQAAEATSEELKAALPNLKVGL 522

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGRM   +K++VM +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLR
Sbjct: 523 VHGRMKAQEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLR 582

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG   S C+LLY  P+SK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G
Sbjct: 583 GRVGRGAVASHCVLLYKTPMSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTG 642

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
             +F +A       L+    + A+H+    PD
Sbjct: 643 NAEFKVADLLRDRDLIPQVHRVARHLHEHYPD 674


>gi|323182443|gb|EFZ67847.1| ATP-dependent DNA helicase RecG [Escherichia coli 1357]
          Length = 693

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVMQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIKVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|254482756|ref|ZP_05095994.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2148]
 gi|214037115|gb|EEB77784.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2148]
          Length = 688

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/676 (37%), Positives = 385/676 (56%), Gaps = 25/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  RGVG K +  L+ +         R  DLLF+ P  + DR     I    +   V 
Sbjct: 8   PVTQLRGVGPKLATKLADV------GIHRVEDLLFHLPLRYQDRTRVTPIGATQDGVDVV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G + + +     +RR   + L DGTG I+L FF+      KN    G ++   G++++
Sbjct: 62  IEGEV-RVADIAFGRRRSLVVRLQDGTGTISLRFFHFSAAQ-KNNLKPGTRLRCFGQVRR 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
             + + M HP Y  +     +    L   VY    G+  + ++K+  +A++RL       
Sbjct: 120 GGSGLEMYHPEYRQVIEGEVETEDALT-PVYPALGGIGQNQWRKLCAQAVTRLK---HST 175

Query: 190 EKDLL-QKKSFP-SIAEAFNIIHNPR----KAKDFEWTSPARERLAYDELLAGQIALLLM 243
            ++LL  +   P  + EA   +H P     +    E   PA+ RLA +EL+A  + L  +
Sbjct: 176 PQELLPTEHPLPYGLGEALVFLHTPPPDAPQESLREGNHPAQLRLAVEELVAHNLTLQGL 235

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q +      ++   ++ ++ L ++PFSPT +Q+  +++I +D+++ + MLR++QGDVG
Sbjct: 236 RAQQQAAGSPQLHGNAQLLEQFLGSLPFSPTAAQQRVMQEITEDIAKPHPMLRLVQGDVG 295

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA  A   A+ +G Q  IMAP  ILA+QH      +     I +  ++G +    
Sbjct: 296 SGKTLVAAAAALQAIASGYQVAIMAPTEILAEQHRLNFMSWFSQLDINIAWLSGRIKGKK 355

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R +ALE I+ G A ++IGTHALFQ  + + +L LVIVDEQHRFGV QRL LT+K+     
Sbjct: 356 RVEALETISSGSAALVIGTHALFQADVMFERLGLVIVDEQHRFGVHQRLSLTEKSGPDVG 415

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL + +  D+D S I E P GR+P++T +I  +R +++++R+    
Sbjct: 416 RPHQLVMTATPIPRTLSMVAYADLDCSVIDELPPGRQPVETALIDNSRREQIVQRVANAC 475

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           + G++ YW+C  +EE      ++       L E     ++ ++HGR+   +K+ VM +FK
Sbjct: 476 AGGRQTYWVCTLVEESDVLQAQAAEATAAELAEALPDLAVGLVHGRLKPTEKDLVMAAFK 535

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY  
Sbjct: 536 AGKIDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTAASHCVLLYQS 595

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS N   RL  ++ + DGF IAE+DL+ R  GE+LG +Q+G+ +F IAQ   H+ LLE 
Sbjct: 596 PLSLNGKQRLQAMRASTDGFYIAEKDLELRGPGEVLGTRQTGLMEFRIAQLPTHNHLLEE 655

Query: 659 ARKDAKHILTQDPDLT 674
            +  A +I    PDL 
Sbjct: 656 VQDIAANIQANHPDLA 671


>gi|306816000|ref|ZP_07450138.1| ATP-dependent DNA helicase RecG [Escherichia coli NC101]
 gi|222035360|emb|CAP78105.1| ATP-dependent DNA helicase recG [Escherichia coli LF82]
 gi|305850396|gb|EFM50853.1| ATP-dependent DNA helicase RecG [Escherichia coli NC101]
 gi|312948213|gb|ADR29040.1| ATP-dependent DNA helicase RecG [Escherichia coli O83:H1 str. NRG
           857C]
 gi|320193841|gb|EFW68474.1| ATP-dependent DNA helicase RecG [Escherichia coli WV_060327]
 gi|324008108|gb|EGB77327.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 57-2]
          Length = 693

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   AV  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRIDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMT 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|167622325|ref|YP_001672619.1| ATP-dependent DNA helicase RecG [Shewanella halifaxensis HAW-EB4]
 gi|167352347|gb|ABZ74960.1| ATP-dependent DNA helicase RecG [Shewanella halifaxensis HAW-EB4]
          Length = 696

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 255/685 (37%), Positives = 388/685 (56%), Gaps = 34/685 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV  K +  L+K+      + T   DLLF+ P  + DR     I+ +     
Sbjct: 11  LVPITDLKGVANKMAERLAKL------SITTVQDLLFHLPLRYEDRTQVYPIASLYPGSY 64

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            TI   I Q S     ++R     + D TG +TL FF       +N    G  I   G+I
Sbjct: 65  GTIEAVI-QSSQIIQGRKRMLTCTVRDDTGSLTLRFFNFSVAQ-RNGLEIGMTIRAYGEI 122

Query: 130 KKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP---- 183
           ++ K+   ++HP Y +    +D+     +  VY    GL    + K+  +AL+ L     
Sbjct: 123 RRGKHFAEIIHPEYKLISPGEDLQLSDTLTPVYPTTEGLKQASWIKLTEQALAMLDNGGL 182

Query: 184 --VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQ 237
             +LP  ++ + L  K      +A  I+H P          + T PA++RL  +ELLA  
Sbjct: 183 QELLPPNLQPNNLDLK------QALQILHRPNNQVSLFELEQGTHPAQQRLIQEELLAHN 236

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +++L +R++  ++  + ++  G++    L ++PF PT +Q+  + DI QD+++   M+R+
Sbjct: 237 LSMLRLRQRSNRDKAVSMHATGQLLNPFLASLPFKPTGAQQRVVADITQDLAKHEPMMRL 296

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKTL+A +A   A+E+G Q  +MAP  +LA+QH      + +   + V  + G
Sbjct: 297 VQGDVGSGKTLIAALAALQAIESGYQVAMMAPTELLAEQHALNFSSWFEPLGLKVGWLAG 356

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +    R ++L  I  G AHI+IGTHA+FQ+ + + KL L+I+DEQHRFGV QRL L +K
Sbjct: 357 KLKGKARAQSLADIESGDAHIVIGTHAIFQEQVVFNKLALIIIDEQHRFGVHQRLGLREK 416

Query: 418 ATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             +    PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I   R DEVI+
Sbjct: 417 GISQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAISEQRRDEVID 476

Query: 474 RLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531
           R++   +++ ++ YW+C  IEE +    ++  +    L        + ++HGRM   +K+
Sbjct: 477 RVRQAAINDKRQTYWVCTLIEESEVLECQAAEDTAEELKRVLPELKVGLVHGRMKPAEKQ 536

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            +M  FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S 
Sbjct: 537 QIMADFKAGELNLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASH 596

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C+LLY PPLS  +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+    IA    
Sbjct: 597 CVLLYKPPLSATATKRLGVLRQSNDGFVIAQQDLEIRGPGEVLGTKQTGIADMKIADLMR 656

Query: 652 HDSLLEIARKDAKHILTQDPDLTSV 676
            ++L+   +K A H++ Q P  TSV
Sbjct: 657 DEALIPHVQKLAAHVMQQAP--TSV 679


>gi|88811932|ref|ZP_01127185.1| ATP-dependent DNA helicase RecG [Nitrococcus mobilis Nb-231]
 gi|88790816|gb|EAR21930.1| ATP-dependent DNA helicase RecG [Nitrococcus mobilis Nb-231]
          Length = 697

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/596 (39%), Positives = 351/596 (58%), Gaps = 20/596 (3%)

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVN 152
           ++DGTG +TL FF+      K     G ++   G+++     + M HP + +F   + ++
Sbjct: 86  ISDGTGRLTLQFFHFYPNQRKR-LQAGVRLLCYGEVRSGPLGLQMTHPQWRVFAPGRPIS 144

Query: 153 FPL-IEAVYSLPTGLSVDLFKKIIVEAL-----SRLPVLPEWIEKDLLQKKSFPSIAEAF 206
               +  VY    GL     +++   AL      R  V  E + + L ++   P + EA 
Sbjct: 145 GEKELTPVYPSTEGLDQASLRRLTRRALEEAMAGRAGV--ELLPRRLREELGLPKLIEAL 202

Query: 207 NIIHNP---RKAKDF-EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKI 261
            ++H P     A D      PA  RL  +ELLA +++LL +R   +     P +   G +
Sbjct: 203 RLLHAPPSTASATDLIARRHPAVRRLILEELLAHRLSLLRLRDHRQLAKSAPKLQGTGAL 262

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            +  L  +PF  T +Q   ++++ +DM Q   MLR++QGDVG GKT++A +A    VEAG
Sbjct: 263 LEAWLARLPFRLTSAQRRVMREVAKDMGQARPMLRLVQGDVGCGKTVIAALAALTTVEAG 322

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q   MAP  +LA+QHY   +++     +    +TG +  + RR+ ++R+A+G+  +++G
Sbjct: 323 WQVAFMAPTELLAEQHYRTFQRWLAPLGVETAWLTGRLAASSRREHIKRLANGEIRVVMG 382

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVL 437
           THALFQD + +++L L IVDEQHRFGV QRL L  K+      PH L+MTATPIPRTL +
Sbjct: 383 THALFQDQVVFHRLGLAIVDEQHRFGVHQRLALKNKSGVEEIQPHQLIMTATPIPRTLAM 442

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           T+  D+D+S I E P GRKPI TV I   R  +VIER++   +EG++AYW+C ++EE + 
Sbjct: 443 TAYADLDVSVIDELPPGRKPIITVAISDARRGQVIERIRHACAEGRQAYWVCTRVEESEA 502

Query: 498 SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +       L E      + ++HGRM  ++KE+VM  F+ G  +LL+ATTVIEVG+D
Sbjct: 503 CQAEAAEATAQRLRESLPELRVGLVHGRMKGVEKEAVMAGFEAGELQLLVATTVIEVGVD 562

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +AS++IIENAE FGLAQLHQLRGR+GRG   SSC+L+YH PLS+ +  RL++L+ T+D
Sbjct: 563 VPNASLMIIENAERFGLAQLHQLRGRIGRGATASSCVLMYHGPLSQTAQARLAILRYTQD 622

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           GF IA+ DL+ R  GE+LG +Q+G   + IA       LL   R+ A  +L   PD
Sbjct: 623 GFRIAQRDLELRGPGELLGTRQTGELHYRIADLRRDTDLLPDVRRWAAILLRGCPD 678


>gi|331644371|ref|ZP_08345500.1| ATP-dependent DNA helicase RecG [Escherichia coli H736]
 gi|331655285|ref|ZP_08356284.1| ATP-dependent DNA helicase RecG [Escherichia coli M718]
 gi|331036665|gb|EGI08891.1| ATP-dependent DNA helicase RecG [Escherichia coli H736]
 gi|331047300|gb|EGI19378.1| ATP-dependent DNA helicase RecG [Escherichia coli M718]
          Length = 704

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 21  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 74

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 75  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 132

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 133 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 190

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 191 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 248

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+    M+R++QGD
Sbjct: 249 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 308

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 309 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIKVGWLAGKQKG 368

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 369 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 428

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 429 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 488

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 489 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 548

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 549 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 608

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 609 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 668

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 669 IPEVQRLARHIHERYP 684


>gi|145633450|ref|ZP_01789180.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           3655]
 gi|144986013|gb|EDJ92615.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           3655]
          Length = 693

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/678 (38%), Positives = 393/678 (57%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI   G  N     DLLF+ P  + DR     I+ +  E+ VT
Sbjct: 10  PLTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q       +     + L+DGT +I L FF     M +N F  G ++   G++K+
Sbjct: 64  IEG-IVQTCEIAFGRSPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            ++   + HP Y  +  N+  V    +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRHMPEIHHPEYQIVLDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQ 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
             ++L  +  P   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  
Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +   M+R++QGDV
Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVLDIEQDLIKDYPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVNQRLMLREKGEKAG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++ R+K  
Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM   +K+ VM  
Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y
Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +A       ++
Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
              +  AK ++ + PDL 
Sbjct: 659 PTVQFYAKSLIQKYPDLA 676


>gi|200386980|ref|ZP_03213592.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199604078|gb|EDZ02623.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 693

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 255/676 (37%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L       S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPEL--AHGMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|11992017|gb|AAG42404.1|AF300471_7 ATP-dependent DNA helicase RecG [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 676

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 249/654 (38%), Positives = 381/654 (58%), Gaps = 22/654 (3%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKIS--EISEERIVTITGYISQHSSFQLQKRRPYKIL 93
           A+ TR  DLLFY PS  + R     I+  ++    I+T+T    +H S     R P++IL
Sbjct: 32  ASVTRLKDLLFYLPSGQMRRVKSDHINAKDVGATVILTLTAKEYRHPS----GRGPFRIL 87

Query: 94  LNDG-TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN 152
             D   G+I LL+F   +   + +   G    V+GK+   + ++ +VHP  I   S++ +
Sbjct: 88  AEDPFGGQIQLLWFGNHSSWARKLMPIGETRLVSGKLDIYQEQLQIVHPSEIVPLSEENS 147

Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
            PL E +Y L  GL+     K++ +A  + P LPEWIE  LL+K  +PS  EA   IH  
Sbjct: 148 IPLEETLYPLSDGLTHRRIGKLVRQAWEKSPDLPEWIEPSLLKKHQWPSWQEAVERIHQH 207

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
              +       A+ R+ YDE+ A Q+AL L+R   +++ G P+  +G +   +  N+PF 
Sbjct: 208 PDDR------AAKLRIGYDEIFANQLALKLIRAANRRKRGFPLKGDGHLRDAL--NLPFQ 259

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
           PT +Q  ++ +I  DM Q + MLR+LQGDVGSGKT VAL ++  A EAG Q  ++AP  I
Sbjct: 260 PTGAQRRSLAEIEGDMQQASPMLRLLQGDVGSGKTWVALHSLLIAAEAGYQGALLAPTEI 319

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QH+E + +      + + ++TG      R   L  +A G  H+++     F+  +  
Sbjct: 320 LARQHFETLSQQLAGLPVNIALLTGRDKGKLRESTLMGLADGSIHLLVVPMPFFRKRLTT 379

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
              + +++      G    + L +KA   PH+L+MTATPIPR+L+LT+ G++D+S++ E 
Sbjct: 380 KIWVSLLLMNSIASGSPNGMMLAEKAIHTPHLLVMTATPIPRSLMLTAHGEMDVSRLDEM 439

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-ESNFR-----SVVE 505
           P GR+P++T +I   +I E+I  L   ++EG ++YW+CP + E   E +F      +  +
Sbjct: 440 PPGRQPVETRVISSRKIPEIIASLGRHIAEGGQSYWVCPAVGEADIEEDFSPNAIAAAEQ 499

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           RF+ L +HF   + ++HG+M   +K+ VMD F  G   +L+ATTVIEVG++V +A+++II
Sbjct: 500 RFSLLQQHFGKKVGLVHGKMKPAEKDKVMDDFAAGKIAVLVATTVIEVGVNVPNATLMII 559

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           + AE FGLAQLHQLRGRVGRG   S C+LL    L+  +  RL++++   DGF +AEEDL
Sbjct: 560 DQAERFGLAQLHQLRGRVGRGGGRSICLLLRSEELTSVARERLALIRECNDGFRLAEEDL 619

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
           + R  GEILG KQSG   F IA PE    LL IA  DA+ ++ +D  L+  RGQ
Sbjct: 620 RLRGSGEILGTKQSGESHFQIASPEDLSELLPIANDDARLLVDRDGGLSGERGQ 673


>gi|197251387|ref|YP_002148675.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197215090|gb|ACH52487.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 693

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/676 (37%), Positives = 382/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L ++PF+PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFTPTSAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRT+ +T+  D+D S I E P GR P+ TV IP  R  E+I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTMAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|161616826|ref|YP_001590791.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194445167|ref|YP_002042993.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|161366190|gb|ABX69958.1| hypothetical protein SPAB_04645 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403830|gb|ACF64052.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 693

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRSWFAPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAI 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|78043676|ref|YP_360300.1| ATP-dependent DNA helicase RecG [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995791|gb|ABB14690.1| ATP-dependent DNA helicase RecG [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 677

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 243/660 (36%), Positives = 390/660 (59%), Gaps = 15/660 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+   +GVG + +  L K+       ET   DL++Y P  + DR    KISE+  + + T
Sbjct: 4   PVQYLKGVGPQKAKLLQKL-----KIET-VKDLIYYFPKRYEDRSSLKKISELINDEVTT 57

Query: 72  ITGYISQ-HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           + G + +        K +  K+ +NDG+G     FF      LKNVF +G+K+   GK++
Sbjct: 58  VLGTVVEVKEVIPRDKLKILKVGINDGSGTAYGCFF--NQSYLKNVFIKGKKVYFYGKVE 115

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWI 189
           K      +    Y F + + ++   +  +Y L   LS   F+++I  AL + L  + E +
Sbjct: 116 KRFFETNIYVYEYEFWDKELLHTNRLVPIYPLTENLSPKTFRQLIKNALDKYLEEITEPL 175

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            +++L+K S P + +A   +H P  +   E +  AR R+ ++E L   +A+ L ++ ++K
Sbjct: 176 PEEILRKYSLPDLKQALMNLHFPESS---EQSELARRRMVFEEFLLFFLAIGLYKENYQK 232

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           + GI I   G++ +K + ++PF  T +QE   ++I +D++ K  M R++QGDVGSGKT++
Sbjct: 233 KPGIVIAGSGELEKKFIDSLPFKLTSAQEKVWREIKEDLAAKKPMNRLVQGDVGSGKTIL 292

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A +A+  AVEAG Q  +MAP  ILA+QHY  + +      I V +++G++    +    +
Sbjct: 293 AALALVKAVEAGFQGALMAPTEILAEQHYLNLSRLFAPLGIKVVLLSGSLSSGKKEAVYK 352

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            I +G A +IIGTHAL Q+++ +  L L ++DEQHRFGV+QR  L +K    + L+M+AT
Sbjct: 353 AIKNGYADVIIGTHALIQEAVIFDNLGLAVIDEQHRFGVEQRSSLVEKGLYVNQLVMSAT 412

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL LT  GD+D+S +   PAGRKPIKT  +      +    L   ++EG++ Y +C
Sbjct: 413 PIPRTLALTLYGDLDVSIVDALPAGRKPIKTYWLSSQDKGKAYAFLLKQVAEGRQGYVVC 472

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P +EE ++    +V + +  L + F      ++HGR+   +KE VM++F+    ++L++T
Sbjct: 473 PLVEESEKLQVEAVTKLYEKLSKKFPQFKWGLMHGRLKPAEKEEVMENFRKNNIQILVST 532

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +A++IIIE+A  FGLAQLHQ+RGRVGRGE  S C LL +P  ++    R+
Sbjct: 533 TVIEVGVDVPNANVIIIEDAWRFGLAQLHQIRGRVGRGEHQSYCFLLGNPR-NQEGIVRM 591

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            +++   DGF IAEEDLK R  GE+ G +QSG  +F +A      ++L +A+K+A  ILT
Sbjct: 592 KIMEKYNDGFKIAEEDLKLRGPGELSGTRQSGAWEFKLADIVRDQAILFLAKKEADEILT 651


>gi|145636800|ref|ZP_01792466.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           PittHH]
 gi|145270098|gb|EDK10035.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           PittHH]
          Length = 693

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/678 (38%), Positives = 393/678 (57%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI   G  N     DLLF+ P  + DR     I+ +  E+  T
Sbjct: 10  PLTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q       +R    + L+DGT +I L FF     M +N F  G ++   G++K+
Sbjct: 64  IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            ++   + HP Y  +  N+  V    +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVK 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
             ++L  +  P   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  
Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +   M+R++QGDV
Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLLKDYPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++ R+K  
Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM   +K+ VM  
Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y
Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGRTASFCVLMY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +A       ++
Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
              +  AK ++ + PDL 
Sbjct: 659 PTVQFYAKSLIQKYPDLA 676


>gi|238910215|ref|ZP_04654052.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 693

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 255/676 (37%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|16331409|ref|NP_442137.1| ATP-dependent DNA helicase RecG [Synechocystis sp. PCC 6803]
 gi|3914638|sp|Q55681|RECG_SYNY3 RecName: Full=ATP-dependent DNA helicase recG
 gi|1001580|dbj|BAA10207.1| DNA recombinase [Synechocystis sp. PCC 6803]
          Length = 831

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 239/655 (36%), Positives = 388/655 (59%), Gaps = 29/655 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99
           DLLFY P  ++D   +  I+E++    VTI G +   + F   K +   IL   L D TG
Sbjct: 162 DLLFYFPRDYLDYAQQVTIAELTAGETVTIVGRVVNCTCFTSPKNQNLNILQIQLRDQTG 221

Query: 100 EITLLFFYRK--------TEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151
            I L  FY           E +K ++     +  +G +K  K  + + +P        D 
Sbjct: 222 RIKLSRFYAGKRFAHRGWQEKIKKLYPPQAVVAASGLVKSSKFGLTLDNPEI---EVLDR 278

Query: 152 NFPLIEA--------VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
           + P I++        VY L  G++ D  +K+++   + +  L + + +++ +K     + 
Sbjct: 279 HSPSIDSFKVGRVLPVYPLTEGITADFLRKLVLACQTAIAKLSDPLPQEIREKYELIDLQ 338

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIA 262
            A   IH P   ++ E  S AR RL +DE    Q+  L  R + K++    I    G++ 
Sbjct: 339 TAIAQIHFP---ENTEKLSLARRRLVFDEFFYLQLGFLQRRYEQKQQQQSAIFTPHGELL 395

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +K    +PF  T++Q+  + +ILQD+++ + M R++QGDVGSGKT+V + A+ AA++ G 
Sbjct: 396 EKFSDLLPFRLTQAQQRVVNEILQDLNKPSPMNRLVQGDVGSGKTVVGVFAILAALQGGY 455

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA +MAP  +LA+QHY+ +  +     + VE++TG+   A RR+   +++ GQ  +++GT
Sbjct: 456 QAALMAPTEVLAEQHYQKLVSWFNLLYLPVELLTGSTKTAKRREIHAQLSTGQLPLLVGT 515

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           HAL Q+++ + +L LV++DEQHRFGVQQR KL  K  APHVL MTATPIPRTL LT  GD
Sbjct: 516 HALIQETVNFQRLGLVVIDEQHRFGVQQRAKLLAKGNAPHVLSMTATPIPRTLALTLHGD 575

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +++S+I E P GR+PI T +I      ++ E ++  +++G++ Y I P IEE ++ + ++
Sbjct: 576 LEVSQIDELPPGRQPIHTSVITAKERPQMYELIRREVAQGRQVYIIFPAIEESEKLDIKA 635

Query: 503 VVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            VE    L E      +I ++HGR+   +KE+ + +F+    +++++TTVIEVG+DV +A
Sbjct: 636 AVEEHKYLTEKIFPNFNIGLLHGRLKSAEKEAALTAFREKQTEIIVSTTVIEVGVDVPNA 695

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           ++++IENAE FGL+QLHQLRGRVGRG   S C+L+ +   S ++  RL V++ ++DGF I
Sbjct: 696 TVMVIENAERFGLSQLHQLRGRVGRGSHQSYCLLVTNSK-SNDARQRLGVMEQSQDGFFI 754

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           AE DL+ R  GE LG KQSG+P F +A       +L +AR+ A+ ++ +DP+L +
Sbjct: 755 AEMDLRLRGPGEFLGTKQSGLPDFALASLVEDQEVLLLAREAAETMMVEDPNLEA 809


>gi|145639715|ref|ZP_01795318.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           PittII]
 gi|145271272|gb|EDK11186.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           PittII]
 gi|309750684|gb|ADO80668.1| ATP-dependent DNA helicase [Haemophilus influenzae R2866]
          Length = 693

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/678 (38%), Positives = 393/678 (57%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI   G  N     DLLF+ P  + DR     I+ +  E+  T
Sbjct: 10  PLTSLSGVGAAISNKLAKI---GIQN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q       +R    + L+DGT +I L FF     M +N F  G ++   G+IK+
Sbjct: 64  IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            ++   + HP Y  +  N+  V    +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRHMSEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQ 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
             ++L  +  P   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  
Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +   M+R++QGDV
Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++ R+K  
Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM   +K+ VM  
Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y
Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +A       ++
Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
              +  AK ++ + PD+ 
Sbjct: 659 PTVQHYAKLLIQKYPDVA 676


>gi|146291557|ref|YP_001181981.1| ATP-dependent DNA helicase RecG [Shewanella putrefaciens CN-32]
 gi|145563247|gb|ABP74182.1| ATP-dependent DNA helicase RecG [Shewanella putrefaciens CN-32]
          Length = 696

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 252/680 (37%), Positives = 388/680 (57%), Gaps = 30/680 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +S    
Sbjct: 11  LVPITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALSPGSY 64

Query: 70  VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            TI   I    S Q+ + R   ++ N  D TG ++L FF       +N    G  I   G
Sbjct: 65  GTIEAEIQ---STQIIQGRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYG 120

Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           ++++  ++  +VHP Y + +  +DV+    +  +Y    GL    + K+  +AL    +L
Sbjct: 121 EVRRGSHQAEIVHPEYKVVYPDEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALV---LL 177

Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQI 238
            E    +LL  +  P   S+ +A   +H P       D E    PA++RL  +ELLA  +
Sbjct: 178 KEGGLTELLPPQLQPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNL 237

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           ++L +R++   +  + +   G++    L  +PF PT +Q+  + +I +D+ + + M+R++
Sbjct: 238 SMLRLRQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVANIGKDLEKPHPMMRLV 297

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G 
Sbjct: 298 QGDVGSGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGK 357

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +K 
Sbjct: 358 LKGKARTQSLADIESGAAQMVIGTHAIFQQHVVFNKLALIIIDEQHRFGVHQRLGLREKG 417

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R +EV+ER
Sbjct: 418 MSQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLER 477

Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           ++  V+++ ++AYW+C  IEE +    ++  +    L       +I ++HGR+   +K+ 
Sbjct: 478 VRNAVITDQRQAYWVCTLIEESEVLECQAAEDTAEELRLALPDLNIGLVHGRLKSAEKQQ 537

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M  FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C
Sbjct: 538 IMADFKAGMIHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIASHC 597

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY  PLS  +  RLSVL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA     
Sbjct: 598 VLLYKAPLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 657

Query: 653 DSLLEIARKDAKHILTQDPD 672
            +L+   +K A H++ Q P+
Sbjct: 658 QALIPHIQKLASHVMAQAPE 677


>gi|114049159|ref|YP_739709.1| ATP-dependent DNA helicase RecG [Shewanella sp. MR-7]
 gi|113890601|gb|ABI44652.1| ATP-dependent DNA helicase RecG [Shewanella sp. MR-7]
          Length = 696

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 255/679 (37%), Positives = 393/679 (57%), Gaps = 28/679 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV K+ +  L+K+        T   DLLF+ P  + DR     I+ +     
Sbjct: 11  LVPITDLKGVAKRVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGNY 64

Query: 70  VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            TI   I    S Q+ + R   ++ N  D TG ++L FF       +N    G  I   G
Sbjct: 65  GTIEAEIQ---STQIIQGRKRMLVCNVRDNTGSMSLRFFNFSMAQ-RNAMQNGLMIRAYG 120

Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP-- 183
           +I++  ++  +VHP Y I +  +D++    +  +Y    GL    + K+  +AL  L   
Sbjct: 121 EIRRGNHQAEIVHPEYKIVYPGEDIHLSDTLTPIYPTTEGLKQASWIKLTEQALELLEDG 180

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQIA 239
            L E +  +L Q  S  S+ +A   +H P       D E    PA++RL  +ELLA  ++
Sbjct: 181 GLTELLPANL-QPNSM-SLKQALQTLHRPHAGISQFDLELGQHPAQQRLVQEELLAHNLS 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +L +R++   +  + ++  G++    L ++PF PT +QE  + +I +D+ Q + M+R++Q
Sbjct: 239 MLRLRQRSNLDAAVTMHASGQLLNPFLTSLPFKPTGAQERVVAEIGKDLEQPHPMMRLVQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +
Sbjct: 299 GDVGSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAANFAAWFEPLGLKVGWLAGKL 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QR+ L +K  
Sbjct: 359 KGKARAQSLADIESGDAQMVIGTHAIFQQQVTFNKLALIIIDEQHRFGVHQRMGLREKGI 418

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R +EV+ER+
Sbjct: 419 NQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDSRRNEVLERV 478

Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +  V+++ ++AYW+C  IEE +    ++  +    L +     SI ++HGRM   +K+ +
Sbjct: 479 RNSVVTDKRQAYWVCTLIEESEVLECQAAEDTAEELRQALPELSIGLVHGRMKSAEKQKI 538

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FK GT  LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 539 MADFKAGTIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 598

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLS+ +  RL+VL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA      
Sbjct: 599 LLYKAPLSQTASQRLNVLRQSNDGFVIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQ 658

Query: 654 SLLEIARKDAKHILTQDPD 672
           +L+   +K A H+++Q P+
Sbjct: 659 ALIPHIQKLASHVMSQAPE 677


>gi|309972869|gb|ADO96070.1| ATP-dependent DNA helicase [Haemophilus influenzae R2846]
          Length = 693

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/678 (37%), Positives = 393/678 (57%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI   G  N     DLLF+ P  + DR     I+ +  E+  T
Sbjct: 10  PLTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q       +R    + L+DGT +I L FF     M +N F  G ++   G++K+
Sbjct: 64  IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNVGM-RNSFQVGVRVKAFGEVKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            ++   + HP Y  +  N+  V    +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQ 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
             ++L  +  P   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  
Sbjct: 179 IAEILPNEFNPHQYSLKEALGLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +   M+R++QGDV
Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLRKKGEKAG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++ R+K  
Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM   +K+ VM  
Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y
Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +A       ++
Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
              +  AK ++ + PD+ 
Sbjct: 659 PTVQHYAKSLIQKYPDVA 676


>gi|198282859|ref|YP_002219180.1| ATP-dependent DNA helicase RecG [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667943|ref|YP_002425060.1| ATP-dependent DNA helicase RecG [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247380|gb|ACH82973.1| ATP-dependent DNA helicase RecG [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218520156|gb|ACK80742.1| ATP-dependent DNA helicase RecG [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 684

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 244/667 (36%), Positives = 389/667 (58%), Gaps = 15/667 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + +S  RGVG      L  +      +  R  D+LF+ PS + DR +   ++ +   +
Sbjct: 10  LQSSVSALRGVGPALVPRLQHM------DLWRVQDVLFHLPSRYQDRRHIASMATLQAGQ 63

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              I G I +    Q   R  + + ++DG+G + +  F+  T  L+  +  GR++   G+
Sbjct: 64  ECAILGEIVR-VDHQRGGREQWLVTVSDGSGRLQIRLFH-MTVALRAQWQVGRRLWCFGE 121

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           ++   + + M+HP +   +      P  +   Y    G++   +++ + +AL+ L  LP+
Sbjct: 122 LRGGFHGLEMIHPEWQMADVPQFQAPRHLTPFYPSSEGITQAQWRRWMAQALTLLDQLPD 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS-PARERLAYDELLAGQIALLLMRKQ 246
           ++E  L     +P + E   ++H    A +      PA +RLA +ELLA  +A+  MR+ 
Sbjct: 182 YLENRL--PPQWPGLREGLRLLHE--SADEIPSPQHPAWQRLALEELLANHLAVRRMRQS 237

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
              +    +  +G++  + L ++PFSPT +QE  I +I  D+ +   M R+LQGDVGSGK
Sbjct: 238 GMMQNAPCLRSKGQLWHRFLAHLPFSPTMAQERVIAEINADLVRHRPMRRLLQGDVGSGK 297

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVA  A   A+EAG Q  +MAP  ILA+Q +   +++ +   + V  + G+     RR+
Sbjct: 298 TLVAAAATLTALEAGYQVAMMAPTEILAEQLHARFQQWLEPLGLEVGYLVGSRSPRARRE 357

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E +A G   ++IGT +LFQ+ + +  L LVI+DEQHRFGV+QR +L +K   PH+L+M
Sbjct: 358 TAETLAGGSLRLVIGTQSLFQEGVVFACLGLVIIDEQHRFGVEQRRQLLEKGAMPHLLVM 417

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL +T   D+++S I   P GR P++T+++P +R  E+I R++ +L  G++ Y
Sbjct: 418 TATPIPRTLAMTVHADLEVSVIDALPPGRTPVETLVMPDSRRPELIGRMQHMLEAGRQIY 477

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           W+CP IEE +    ++       L       ++ +IHGRM   +K  VM +F++G  ++L
Sbjct: 478 WVCPLIEESEILELQAAEASVADLQAALPGVAVGLIHGRMRSTEKAEVMAAFQSGAVRIL 537

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVG+DV  AS++IIE+AE  GLAQLHQLRGRVGRG + SSCILLYHPPLS  + 
Sbjct: 538 VATTVIEVGVDVPGASLMIIEHAERLGLAQLHQLRGRVGRGAQRSSCILLYHPPLSGKAR 597

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL V++ T DGF IA +DL+ R  GE LG +Q+G+ +  +A     ++LL +    A+ 
Sbjct: 598 ERLRVMRETHDGFAIARKDLELRGPGEYLGTRQAGILQMRVANILRDEALLVMVPALAER 657

Query: 666 ILTQDPD 672
           +L +DP+
Sbjct: 658 LLQEDPE 664


>gi|309704054|emb|CBJ03400.1| ATP-dependent DNA helicase [Escherichia coli ETEC H10407]
          Length = 693

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R+  
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVHH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|16131523|ref|NP_418109.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89110360|ref|AP_004140.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|170083159|ref|YP_001732479.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|194435934|ref|ZP_03068037.1| ATP-dependent DNA helicase RecG [Escherichia coli 101-1]
 gi|238902743|ref|YP_002928539.1| ATP-dependent DNA helicase [Escherichia coli BW2952]
 gi|253771506|ref|YP_003034337.1| ATP-dependent DNA helicase RecG [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163580|ref|YP_003046688.1| ATP-dependent DNA helicase RecG [Escherichia coli B str. REL606]
 gi|260857953|ref|YP_003231844.1| ATP-dependent DNA helicase RecG [Escherichia coli O26:H11 str.
           11368]
 gi|260870382|ref|YP_003236784.1| ATP-dependent DNA helicase RecG [Escherichia coli O111:H- str.
           11128]
 gi|297518057|ref|ZP_06936443.1| ATP-dependent DNA helicase RecG [Escherichia coli OP50]
 gi|300927917|ref|ZP_07143476.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 187-1]
 gi|312972062|ref|ZP_07786236.1| ATP-dependent DNA helicase RecG [Escherichia coli 1827-70]
 gi|132252|sp|P24230|RECG_ECOLI RecName: Full=ATP-dependent DNA helicase recG
 gi|42669|emb|CAA42123.1| recG [Escherichia coli K-12]
 gi|147545|gb|AAA24513.1| DNA recombinase [Escherichia coli]
 gi|2367254|gb|AAC76676.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85676391|dbj|BAE77641.1| ATP-dependent DNA helicase [Escherichia coli str. K12 substr.
           W3110]
 gi|169890994|gb|ACB04701.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|194425477|gb|EDX41461.1| ATP-dependent DNA helicase RecG [Escherichia coli 101-1]
 gi|238860041|gb|ACR62039.1| ATP-dependent DNA helicase [Escherichia coli BW2952]
 gi|242379176|emb|CAQ33978.1| RecG DNA helicase [Escherichia coli BL21(DE3)]
 gi|253322550|gb|ACT27152.1| ATP-dependent DNA helicase RecG [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975481|gb|ACT41152.1| ATP-dependent DNA helicase [Escherichia coli B str. REL606]
 gi|253979637|gb|ACT45307.1| ATP-dependent DNA helicase [Escherichia coli BL21(DE3)]
 gi|257756602|dbj|BAI28104.1| ATP-dependent DNA helicase RecG [Escherichia coli O26:H11 str.
           11368]
 gi|257766738|dbj|BAI38233.1| ATP-dependent DNA helicase RecG [Escherichia coli O111:H- str.
           11128]
 gi|300464009|gb|EFK27502.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 187-1]
 gi|310334439|gb|EFQ00644.1| ATP-dependent DNA helicase RecG [Escherichia coli 1827-70]
 gi|323155305|gb|EFZ41488.1| ATP-dependent DNA helicase RecG [Escherichia coli EPECa14]
 gi|323177657|gb|EFZ63241.1| ATP-dependent DNA helicase RecG [Escherichia coli 1180]
 gi|323934803|gb|EGB31185.1| ATP-dependent DNA helicase RecG [Escherichia coli E1520]
 gi|323959900|gb|EGB55548.1| ATP-dependent DNA helicase RecG [Escherichia coli H489]
 gi|323971294|gb|EGB66539.1| ATP-dependent DNA helicase RecG [Escherichia coli TA007]
 gi|332345641|gb|AEE58975.1| ATP-dependent DNA helicase RecG [Escherichia coli UMNK88]
          Length = 693

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R+  
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVHH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|254038853|ref|ZP_04872905.1| ATP-dependent DNA helicase recG [Escherichia sp. 1_1_43]
 gi|226838818|gb|EEH70845.1| ATP-dependent DNA helicase recG [Escherichia sp. 1_1_43]
          Length = 704

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 21  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 74

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 75  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAGRRVLAYGEAKR 132

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 133 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 190

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 191 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 248

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 249 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 308

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 309 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 368

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 369 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 428

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R+  
Sbjct: 429 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVHH 488

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 489 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 548

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 549 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 608

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 609 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 668

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 669 IPEVQRLARHIHERYP 684


>gi|168235359|ref|ZP_02660417.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194735749|ref|YP_002116687.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194711251|gb|ACF90472.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291521|gb|EDY30873.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 693

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +   +L ++PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDNLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|238797644|ref|ZP_04641140.1| ATP-dependent DNA helicase recG [Yersinia mollaretii ATCC 43969]
 gi|238718508|gb|EEQ10328.1| ATP-dependent DNA helicase recG [Yersinia mollaretii ATCC 43969]
          Length = 666

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 247/645 (38%), Positives = 378/645 (58%), Gaps = 20/645 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL + P  + DR    +I ++     VT+ G + + S     +RR     ++DG+G +T
Sbjct: 8   DLLLHLPLRYEDRTQLYRIGDLLPGISVTVEGEVLR-SDITFGRRRMMTCQISDGSGVLT 66

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---V 159
           L FF     M KN    G+ +   G+ K+      ++HP Y  H  +++   L E+   V
Sbjct: 67  LRFFNFNAAM-KNSLSPGKHVIAYGEAKRGNTGPEIIHPEYRVHG-ENIGVELQESLTPV 124

Query: 160 YSLPTGLSVDLFKKIIVEALSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---K 214
           Y    G+     +K+I +AL+ L   V+ E +  +L   +S  S+ EA + +H P    +
Sbjct: 125 YPTTEGIRQATLRKLIDQALAMLDTTVIAELLPIEL--SRSLISLPEAIHTLHRPPANIQ 182

Query: 215 AKDFEWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
             D E    PA+ RL  +ELLA  +++L +R   +    +P+  E ++  + L  +PF+P
Sbjct: 183 LVDLEQGKHPAQRRLIMEELLAHNLSMLAVRAGAQSYRALPLLAEDQLKPRFLAALPFTP 242

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q+  + +I QDM+    M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +L
Sbjct: 243 TRAQQRVVAEIEQDMTHNFPMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELL 302

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH    +++ +   + V  + G      R    E +A GQ  +++GTHA+FQ+ +++ 
Sbjct: 303 AEQHANTFRQWLEPLGLEVGWLAGKQKGKARLAQQEAVASGQVSMVVGTHAMFQEQVKFS 362

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            L LVI+DEQHRFGV QRL L +K       PH L+MTATPIPRTL +T+  D+D S I 
Sbjct: 363 GLALVIIDEQHRFGVHQRLALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVID 422

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           E P GR P+ TV IP  R  +VI+R+K   L EG++AYW+C  IEE +    ++      
Sbjct: 423 ELPPGRTPVTTVAIPDTRRSDVIQRVKNACLEEGRQAYWVCTLIEESELLEAQAAEVTCE 482

Query: 509 SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            L       ++ ++HGRM   +K++VM +FK G  +LL+ATTVIEVG+DV +AS++II+N
Sbjct: 483 ELKIALPEINVGLVHGRMKGPEKQAVMLAFKQGELQLLVATTVIEVGVDVPNASLMIIDN 542

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLAQLHQLRGRVGRG   S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ 
Sbjct: 543 PERLGLAQLHQLRGRVGRGAVASHCVLLYKTPLSKTAQMRLQVLRDSNDGFVIAQRDLEI 602

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           R  GE+LG +Q+G  +F +A      +++   ++ A+H+  Q P+
Sbjct: 603 RGPGELLGTRQTGSAEFKVADLLRDQAMIPEVQRVARHLHQQYPE 647


>gi|148825722|ref|YP_001290475.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae PittEE]
 gi|229846915|ref|ZP_04467021.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           7P49H1]
 gi|148715882|gb|ABQ98092.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           PittEE]
 gi|229809999|gb|EEP45719.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           7P49H1]
          Length = 693

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 258/678 (38%), Positives = 392/678 (57%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI   G  N     DLLF+ P  + DR     I+ +  E+  T
Sbjct: 10  PLTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q       +R    + L+DGT +I L FF     M +N F  G ++   G++K+
Sbjct: 64  IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y  +  N+  V    +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRYMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQ 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
             ++L  +  P   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  
Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +   M+R++QGDV
Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRQWFEPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 SRQAELEKIKTGTVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++ R+K  
Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM   +K+ VM  
Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y
Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +A       ++
Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
              +  AK ++ + PDL 
Sbjct: 659 PTVQHYAKSLIQKYPDLA 676


>gi|320661351|gb|EFX28775.1| ATP-dependent DNA helicase RecG [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 693

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P  R P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPSRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|331675129|ref|ZP_08375886.1| ATP-dependent DNA helicase RecG [Escherichia coli TA280]
 gi|331068038|gb|EGI39436.1| ATP-dependent DNA helicase RecG [Escherichia coli TA280]
          Length = 704

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/675 (37%), Positives = 380/675 (56%), Gaps = 28/675 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           LS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T+
Sbjct: 22  LSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATV 75

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+ 
Sbjct: 76  EGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKRG 133

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
           K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    + 
Sbjct: 134 KYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLATCAIE 191

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLL 242
           E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L 
Sbjct: 192 ELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSMLA 249

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGDV
Sbjct: 250 LRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDAPMMRLVQGDV 309

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G     
Sbjct: 310 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKGK 369

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K     
Sbjct: 370 ARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQG 429

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++  
Sbjct: 430 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRHA 489

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM S
Sbjct: 490 CMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMAS 549

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 550 FKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLY 609

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      +++
Sbjct: 610 KTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMI 669

Query: 657 EIARKDAKHILTQDP 671
              ++ A+HI  + P
Sbjct: 670 PEVQRLARHIHERYP 684


>gi|21232667|ref|NP_638584.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767279|ref|YP_242041.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21114475|gb|AAM42508.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572611|gb|AAY48021.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 713

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/705 (36%), Positives = 384/705 (54%), Gaps = 50/705 (7%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           PS      APLS+  GVG K +  F ++ I           DL  + P  + DR     I
Sbjct: 9   PSLAVAGQAPLSSLPGVGPKVAEKFAARGI-------LSLQDLWLHLPLRYEDRTRLTTI 61

Query: 62  SEISEERIVTITGYI-SQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVFF 118
           +++       I G + +    F+    RP     + +D  G + L FF+ +   +   F 
Sbjct: 62  AQLQGGVPAQIEGRVEAMERGFRF---RPVLRVAMSDDSCGTLVLRFFHFRAAQVAQ-FS 117

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176
            G ++ V G  K  +N   +VHP Y +    +D      ++ VY +  G+     +K+I 
Sbjct: 118 PGTRLRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDCLDPVYPVLEGVGPATLRKLIG 177

Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225
           +AL RLP       + P W     LQ +  PS+  A   +H P    D         PA+
Sbjct: 178 QALERLPPEAALELLPPHW-----LQDEQLPSLRSALLTMHRPPVDTDPQQLLAGGHPAQ 232

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +RLA +ELLA Q++L   R   ++    P    G++ Q++ + +PF  T +Q+   + I 
Sbjct: 233 QRLAIEELLAHQVSLRRQRIALQR-FRAPQLRGGRLVQQLRKALPFQLTGAQQRVFEQIA 291

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D++Q   MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + 
Sbjct: 292 HDLAQPAPMLRLVQGDVGSGKTVVAALAAMLAVEHGKQVALAAPTELLAEQHLANLRGWL 351

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +   + +  + G +    R  A+  +A GQA +++GTHAL QD++ ++ L L I+DEQHR
Sbjct: 352 EPLGVRIVWLAGKVTGKARVAAMAEVASGQAQVVVGTHALMQDAVVFHDLALAIIDEQHR 411

Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           FGV QRL L  K  A    PH L+MTATPIPRTL + +  D+ +S I E P GR P++T+
Sbjct: 412 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMAAYADLHVSAIDELPPGRTPVQTI 471

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-----------FRSVVERFNSL 510
           ++   R  E++ER++   +EG++AYW+C  IEE ++++            ++    F +L
Sbjct: 472 VLSAERRPELVERIRAACAEGRQAYWVCTLIEESEDTDKGAQNGPPRIEAQAAQVTFETL 531

Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                   +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIENAE
Sbjct: 532 SAQLPGVRVALVHGRMKPAEKQQAMLDFKQGRTDLLVATTVIEVGVDVPNASLMIIENAE 591

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
             GLAQLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE DL+ R 
Sbjct: 592 RLGLAQLHQLRGRVGRGAAASSCVLLYQGPLSLMARQRLETMRQTNDGFVIAERDLELRG 651

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            GE+LG +Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 652 PGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLDEAPEIA 696


>gi|237728948|ref|ZP_04559429.1| ATP-dependent DNA helicase RecG [Citrobacter sp. 30_2]
 gi|226909570|gb|EEH95488.1| ATP-dependent DNA helicase RecG [Citrobacter sp. 30_2]
          Length = 693

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 378/676 (55%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +LLQ     S+ EA   +H P  +    D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELLQ--GMMSLPEALRTLHRPPPSLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q     +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANNALKDKLLAALPFKPTGAQAHVTAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477

Query: 478 VLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             + EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K+SVM 
Sbjct: 478 ACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQSVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGTAEFKVADLLRDQAI 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|56750479|ref|YP_171180.1| ATP-dependent DNA helicase RecG [Synechococcus elongatus PCC 6301]
 gi|81299888|ref|YP_400096.1| ATP-dependent DNA helicase RecG [Synechococcus elongatus PCC 7942]
 gi|56685438|dbj|BAD78660.1| ATP-dependent DNA helicase RecG [Synechococcus elongatus PCC 6301]
 gi|81168769|gb|ABB57109.1| ATP-dependent DNA helicase RecG [Synechococcus elongatus PCC 7942]
          Length = 817

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/681 (34%), Positives = 392/681 (57%), Gaps = 30/681 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERIVT 71
           L+  +GVG + +  L ++       E R + DLL ++P +++D   +  I  +      T
Sbjct: 125 LTYLKGVGPRVAAQLERL-------ELRTVRDLLHHYPRNYVDYARQVNIRALEPGETAT 177

Query: 72  ITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKT--------EMLKNVFFEG 120
           + G + + + F   +     IL   + DG+G++ L  F+  T        E  + ++  G
Sbjct: 178 LIGAVQRCTCFTSPRNAKLTILELVVRDGSGQLRLSRFFMGTRYSGRGWQEQQRRLYPPG 237

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD-----VNFPLIEAVYSLPTGLSVDLFKKII 175
             I  +G +K+ K  + + +P     +S D     +    I  +Y L  G++ D  ++ I
Sbjct: 238 TMIAASGLVKRSKYGVTLDNPEIEVLDSPDSPIASLKVGRIVPIYPLTEGVAADTLRRAI 297

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           V+AL     L + +   L ++     + +A   IH P      E    AR RL +DE L 
Sbjct: 298 VQALPAAEQLRDPLPTVLREQHQLLVLNQAIAAIHFPETP---ELLQQARRRLVFDEFLY 354

Query: 236 GQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
            Q+ LL  R + +      +    G++  +  + +PF  T +Q+  + DIL D+ Q   M
Sbjct: 355 LQLGLLQRRARQRAAAAAAVLAPTGELIDRFYQLLPFQLTGAQQRVVNDILTDLQQPWPM 414

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++QGDVGSGKT+VA++++ AA++AG Q  +MAP  +LA+QHY  +  +     + VE+
Sbjct: 415 NRLVQGDVGSGKTVVAIVSLLAAIQAGYQGALMAPTEVLAEQHYRKLVDWCTQLHLPVEL 474

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+   A RR+    +A G+  +++GTHAL QD + +  L LV++DEQHRFGV QR KL
Sbjct: 475 LTGSTRAAKRREIQRSLATGELPLLVGTHALIQDPVDFQNLGLVVIDEQHRFGVAQRAKL 534

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            QK   PHVL MTATPIPRTL LT  GD+++S+I E P GR+PI+T  +  +      + 
Sbjct: 535 QQKGVNPHVLTMTATPIPRTLALTLHGDLEVSQIDELPPGRQPIQTTALGPSDRHHAHDL 594

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  +++G++ Y + P +EE ++ + RS +E +  L + F    I ++HGRMS  +K++ 
Sbjct: 595 MRREIAQGRQVYVVLPLVEESEKLDLRSAIEEYQRLSQVFPEFQIGLLHGRMSSAEKDAA 654

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           + +F++    +L++TTV+EVG+DV +A++++IE+AE FGL+QLHQLRGRVGRG   S C+
Sbjct: 655 IAAFRDRQTDILVSTTVVEVGVDVPNATVMLIEHAERFGLSQLHQLRGRVGRGAARSYCL 714

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+     S+ +  RL V++ ++DGF IAE DL+ R  G++LG +QSG+P F +A      
Sbjct: 715 LM-SASRSETAQQRLKVMEQSQDGFFIAEMDLRLRGPGQVLGTRQSGLPDFALASLVEDQ 773

Query: 654 SLLEIARKDAKHILTQDPDLT 674
            +L++AR  A+ ++ QDP+LT
Sbjct: 774 DVLDLARTTAEQLIEQDPELT 794


>gi|293393636|ref|ZP_06637946.1| DNA helicase RecG [Serratia odorifera DSM 4582]
 gi|291423971|gb|EFE97190.1| DNA helicase RecG [Serratia odorifera DSM 4582]
          Length = 693

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/682 (37%), Positives = 385/682 (56%), Gaps = 38/682 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   +  L+KI       ET   DLL + P  + DR     I E+      T
Sbjct: 10  PLTTLSGVGASQAGKLAKI-----GLET-IQDLLLHLPLRYEDRTRLYPIGELLSGIFAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + +     +RR     ++DGTG +T+ FF     M KN    GR++T  G++K+
Sbjct: 64  VEGEVLR-TDISFGRRRMLTCQISDGTGILTMRFFNFNAAM-KNSLATGRRVTAYGEVKR 121

Query: 132 LKNRIIMVHPHYIF---HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL------ 182
             +   ++HP Y     H+  ++   L   VY    G+     +K+  +AL+ L      
Sbjct: 122 GNHGAEIIHPEYRIQGEHSEVELQESLT-PVYPTTEGIRQATLRKLTDQALTLLDTCAIA 180

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAG 236
            +LP  +   L+      S+ +A + +H P  A D +         PA++RL  +ELLA 
Sbjct: 181 ELLPTELSGGLM------SLPQALHTLHRP--APDIQLADLEQGRHPAQKRLIMEELLAH 232

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            +++L +R   +     P+  + ++  + L  +PF+PT +Q   + DI  D+ +   M+R
Sbjct: 233 NLSMLAVRAGAQSYHAQPLMPDDRLKNQFLAQLPFAPTGAQRRVVADIEADLQKNFPMMR 292

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   I V  + 
Sbjct: 293 LVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRQWFEPLGIEVGWLA 352

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G      R    E IA GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +
Sbjct: 353 GKQKGKARIAQQEAIASGQVSMVVGTHAMFQEQVQFNGLALVIIDEQHRFGVHQRLALWE 412

Query: 417 KATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           K        H L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I
Sbjct: 413 KGEEQGYHAHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRADII 472

Query: 473 ERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
           ER++   L EG++AYW+C  IEE +    ++    +  L        +A++HGRM   +K
Sbjct: 473 ERVRNACLQEGRQAYWVCTLIEESELLEAQAAEATWEELKTALPELKVALVHGRMKAQEK 532

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           ++VM +FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S
Sbjct: 533 QAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVAS 592

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A   
Sbjct: 593 HCVLLYKTPLSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLL 652

Query: 651 LHDSLLEIARKDAKHILTQDPD 672
              +++   ++ A+HI    P+
Sbjct: 653 RDQAMIPEVQRVARHIHQNYPE 674


>gi|218556215|ref|YP_002389128.1| ATP-dependent DNA helicase RecG [Escherichia coli IAI1]
 gi|218362983|emb|CAR00621.1| ATP-dependent DNA helicase [Escherichia coli IAI1]
          Length = 693

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 381/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF  T +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKQTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|320179990|gb|EFW54932.1| ATP-dependent DNA helicase RecG [Shigella boydii ATCC 9905]
          Length = 693

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 379/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIVHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA  Q  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASSQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|114561544|ref|YP_749057.1| ATP-dependent DNA helicase RecG [Shewanella frigidimarina NCIMB
           400]
 gi|114332837|gb|ABI70219.1| ATP-dependent DNA helicase RecG [Shewanella frigidimarina NCIMB
           400]
          Length = 705

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 383/676 (56%), Gaps = 24/676 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV KK +  L+K+            D+LF+ P  + DR     I+ +     
Sbjct: 20  LVPITDLKGVAKKVAEKLAKL------GIKTVQDVLFHLPLRYEDRTQIHPIAALPPGSF 73

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            TI   I Q +     +RR     ++D +G ++L FF       +N    G  I   G+I
Sbjct: 74  GTIEAEI-QSTQIMQGRRRMLVCNVHDHSGMMSLRFFNFSMAQ-RNAMENGASIRAYGEI 131

Query: 130 KKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--L 185
           ++  +   +VHP Y I H  + V     +  +Y    G+    + K+  +AL+ L    L
Sbjct: 132 RRGNHHKEIVHPEYQIIHPGESVTLSDTLTPIYPTTEGVKQASWIKLTEQALAMLDQGGL 191

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKA-KDFEWTS---PARERLAYDELLAGQIALL 241
           PE +   L  + +  S+ +A +I+H P  +   FE      PA++RL  +ELLA  +++L
Sbjct: 192 PELLPSAL--QPNNISLRDALHILHRPHSSVSPFELEQGQHPAQQRLIQEELLAHNLSML 249

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R++  ++  +P+   G++    L  +PF PT +Q+  + +I QD+     M+R++QGD
Sbjct: 250 QLRQRSNQDAAVPMPATGQLLSPFLAQLPFKPTGAQQRVVAEINQDLQHPTPMMRLVQGD 309

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +  
Sbjct: 310 VGSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAANFATWFEPLGLKVGWLAGKLKG 369

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R ++LE IA G A ++IGTHA+FQ ++ + KL L+I+DEQHRFGV QRL L +K  + 
Sbjct: 370 KARIQSLEDIASGAAQMVIGTHAIFQQAVVFNKLALIIIDEQHRFGVHQRLGLREKGVSQ 429

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I   R ++VIER+K 
Sbjct: 430 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIADTRREQVIERVKQ 489

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             L + ++AYW+C  IEE +    ++  +    L        I +IHGRM   +K+++M 
Sbjct: 490 AALHDNRQAYWVCTLIEESEVLECQAAEDTAAELTIALPELKIGLIHGRMKSAEKQTIMA 549

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 550 QFKAGELNLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 609

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLS+ +  RL VL+N+ DGF+IA++DL+ R  GE+LG KQ+G+    IA       L
Sbjct: 610 YKAPLSQTATKRLGVLRNSNDGFVIAQKDLEIRGPGEVLGTKQTGLADLKIADLIRDQHL 669

Query: 656 LEIARKDAKHILTQDP 671
           +   +K A H+  Q P
Sbjct: 670 IAPTQKLASHVYQQVP 685


>gi|260447329|gb|ACX37751.1| ATP-dependent DNA helicase RecG [Escherichia coli DH1]
 gi|315138234|dbj|BAJ45393.1| ATP-dependent DNA helicase RecG [Escherichia coli DH1]
          Length = 693

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 379/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R+  
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVHH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK    RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTVQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|262273556|ref|ZP_06051370.1| ATP-dependent DNA helicase RecG [Grimontia hollisae CIP 101886]
 gi|262222534|gb|EEY73845.1| ATP-dependent DNA helicase RecG [Grimontia hollisae CIP 101886]
          Length = 693

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 252/661 (38%), Positives = 385/661 (58%), Gaps = 26/661 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR S L+ +  P+++  GVG K +  L K+            DLLF+ P  + DR     
Sbjct: 1   MRASMLDAV--PVTSLTGVGGKMAEKLEKL------GLFTVQDLLFHLPYRYEDRTRVWP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I  +   +  T+ G +  +++    +RR   + + DG G +TL FF     M KN   +G
Sbjct: 53  IMSLMPGQHATVEGEVVSNNTV-FGRRRMLTVKITDGNGSLTLRFFNFNAAM-KNSLEQG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEA-VYSLPTGLSVDLFKKIIVEA 178
           +++   G+IK+ ++ + ++HP Y +F    ++        VY    GL     + +  +A
Sbjct: 111 KRVKAYGEIKRGQSGLEIIHPEYKVFSEPTELTLEETLTPVYPTTEGLRQLTLRNLTSQA 170

Query: 179 LSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDE 232
           L+ L    + E + + L  ++   ++ +A  I+H P      A+  +   PA++RL  +E
Sbjct: 171 LALLDGAAVQELLPEGLYDRQI--TLRDALKILHRPTPDISVAQLEKGEHPAQKRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R + +++    +    ++  K+L ++PFSPT +Q   + DI +DM    
Sbjct: 229 LLAQNLSMLAVRSKLQQDPTFSLPPSTELKPKLLASLPFSPTGAQSRVVADIERDMGLNK 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALQAIEQGYQVALMAPTELLAEQHAINFANWLEPLGISV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    +   L  IA G+A +++GTHALFQ  +++ KL LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKLTGKAKEAQLASIASGEAKMVVGTHALFQKQVEFDKLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           +L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR PI+TV +P  R 
Sbjct: 409 ELREKGMKQGIHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPIQTVAVPDTRR 468

Query: 469 DEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I R+    + EG++AYW+C  I+E +    ++  +  + L        I ++HGRM 
Sbjct: 469 IDIINRVHAACIGEGRQAYWVCTLIDESEVLEAQAAADTADDLARALPDLKIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 AAEKQAVMQAFKAGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLYH PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+ +F I
Sbjct: 589 SVASHCVLLYHAPLSKTATQRLGVLRESSDGFVIAQRDLEIRGPGELLGTKQTGIAEFKI 648

Query: 647 A 647
           A
Sbjct: 649 A 649


>gi|260582089|ref|ZP_05849884.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae NT127]
 gi|260094979|gb|EEW78872.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae NT127]
          Length = 693

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/677 (37%), Positives = 393/677 (58%), Gaps = 26/677 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L++  GVG   S  L+KI   G  N     DLLF+ P  + DR     I+ +  E+  TI
Sbjct: 11  LTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFTI 64

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G I Q       +R    + L+DGT +I L FF     M +N F  G ++   G++K+ 
Sbjct: 65  EG-IVQTCEVAFSRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKRG 122

Query: 133 KNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           ++   + HP Y  +  N+  V    +  +YS+  GL  +  +K+  +AL+   +L +   
Sbjct: 123 RHMPEIHHPEYQIVRDNAPIVLEETLTPIYSITEGLKQNSLRKLTDQALT---LLDKVQI 179

Query: 191 KDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLM 243
            ++L  +  P   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  +
Sbjct: 180 AEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +   M+R++QGDVG
Sbjct: 240 RLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +    
Sbjct: 300 SGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGKS 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLRKKGEKAGF 419

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++ R+K   
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM   +K+ VM  F
Sbjct: 480 VNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y 
Sbjct: 540 KNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +A       ++ 
Sbjct: 600 PPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLT 674
             +  AK ++ + PD+ 
Sbjct: 660 TVQHYAKSLIQKYPDVA 676


>gi|283787716|ref|YP_003367581.1| ATP-dependent DNA helicase [Citrobacter rodentium ICC168]
 gi|282951170|emb|CBG90862.1| ATP-dependent DNA helicase [Citrobacter rodentium ICC168]
          Length = 693

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 253/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  G+G   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGIGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     + DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNVTFGGRRMMTCQIGDGSGILTMRFFNFSAAM-KNSLAAGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  +    +
Sbjct: 122 GKYGAEMIHPEYRIQG--DLSTPALQETLTPVYPTTEGIKQATLRKLTDQALDLMDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    K  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELSQ--GMMSLPEALRTLHRPPPTLKLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLASLPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++     + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGRQVALMAPTELLAEQHANNFRQWFAPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGEQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             + EG++AYW+C  IEE      ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACIQEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAI 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|23008733|ref|ZP_00050052.1| COG1200: RecG-like helicase [Magnetospirillum magnetotacticum MS-1]
          Length = 380

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/382 (50%), Positives = 275/382 (71%), Gaps = 2/382 (0%)

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T VAL+AMA+AVEAG QA +MAP  ILA+QHYE +       ++   ++TG    A RR 
Sbjct: 1   TAVALLAMASAVEAGRQAALMAPTEILARQHYERLVPLAGAMRL--RLLTGRDKAAERRA 58

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            L  +A G+  I++GTHALFQ+++ +  L L +VDEQHRFGV QRL L  K  A  +L+M
Sbjct: 59  TLADLAAGEIDIVVGTHALFQEAVAFRDLGLAVVDEQHRFGVHQRLALGAKGEAVDILVM 118

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL LT  GD+D+S + EKPAGR+PIKT+ +P+ RIDEV++ L   L+ G + Y
Sbjct: 119 TATPIPRTLALTFFGDMDVSVLDEKPAGRQPIKTITVPVERIDEVVDGLHRALAAGDRVY 178

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           WICP + E +  +  +  ERF+ L +HF   + +IHG+M   +K++ M++F  G  ++L+
Sbjct: 179 WICPLVAESEYVDLAAAAERFDDLRKHFGDQVGLIHGKMPGPEKDAAMEAFAAGRTRVLV 238

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC+LLY  PL + +  
Sbjct: 239 STTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSCLLLYRGPLGQVAKA 298

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL +++ +EDGF IAEEDL+ R EGE+LG +QSGM  F +A+ E   +LLE AR DA+ I
Sbjct: 299 RLEMMRASEDGFRIAEEDLRLRGEGEVLGTRQSGMAAFRLARLESDGALLEAARDDARLI 358

Query: 667 LTQDPDLTSVRGQSIRILLYLY 688
           + +DP ++S RG+++R+L+YL+
Sbjct: 359 VERDPRVSSERGRALRVLIYLF 380


>gi|217971561|ref|YP_002356312.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS223]
 gi|217496696|gb|ACK44889.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS223]
          Length = 691

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/680 (36%), Positives = 387/680 (56%), Gaps = 30/680 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +     
Sbjct: 6   LVPITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGSY 59

Query: 70  VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            TI   I    S Q+ + R   ++ N  D TG ++L FF       +N    G  I   G
Sbjct: 60  GTIEAEIQ---STQIIQGRKRMLVCNVRDDTGSLSLRFFNFSIAQ-RNAMQNGLMIRAYG 115

Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           ++++  ++  +VHP Y + +  +DV+    +  +Y    GL    + K+  +AL    +L
Sbjct: 116 EVRRGGHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALV---LL 172

Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQI 238
            +    +LL  +  P   S+ +A   +H P       D E    PA++RL  +ELLA  +
Sbjct: 173 EDGGLTELLPPQLQPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNL 232

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           ++L +R++   +  + +   G++    L  +PF PT +Q+  + DI +D+ Q + M+R++
Sbjct: 233 SMLRLRQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEQPHPMMRLV 292

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G 
Sbjct: 293 QGDVGSGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGK 352

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +K 
Sbjct: 353 LKGKARAQSLADIESGAAQMVIGTHAIFQQHVVFNKLALIIIDEQHRFGVHQRLGLREKG 412

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R +EV+ER
Sbjct: 413 VSQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLER 472

Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           ++  V+++ ++AYW+C  IEE +    ++  +    L       +I ++HGR+   +K+ 
Sbjct: 473 VRNAVITDKRQAYWVCTLIEESEVLECQAAEDTAEELRLALPELNIGLVHGRLKSAEKQQ 532

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M  FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C
Sbjct: 533 IMADFKAGIIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHC 592

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY  PLS  +  RLSVL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA     
Sbjct: 593 VLLYKAPLSNTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 652

Query: 653 DSLLEIARKDAKHILTQDPD 672
            +L+   +K A H++ Q P+
Sbjct: 653 QALIPHIQKLANHVMAQAPE 672


>gi|293417113|ref|ZP_06659740.1| ATP-dependent DNA helicase RecG [Escherichia coli B185]
 gi|291431144|gb|EFF04137.1| ATP-dependent DNA helicase RecG [Escherichia coli B185]
          Length = 693

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 379/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLQTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALNVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++ G +AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTGGCQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|330909713|gb|EGH38227.1| ATP-dependent DNA helicase RecG [Escherichia coli AA86]
          Length = 693

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSTNDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   AV  G Q  +MAP  +LA+QH    + +     I V  +      
Sbjct: 298 VGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLARKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMT 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|16273626|ref|NP_439884.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae Rd KW20]
 gi|260580699|ref|ZP_05848526.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae RdAW]
 gi|1172894|sp|P43809|RECG_HAEIN RecName: Full=ATP-dependent DNA helicase recG
 gi|1574599|gb|AAC23387.1| ATP-dependent DNA helicase (recG) [Haemophilus influenzae Rd KW20]
 gi|260092761|gb|EEW76697.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae RdAW]
          Length = 693

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/678 (37%), Positives = 393/678 (57%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI   G  N     DLLF+ P  + DR     I+ +  E+  T
Sbjct: 10  PLTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITLIANLRPEQYFT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q       +R    + L+DGT +I L FF     M +N F  G ++   G++K+
Sbjct: 64  IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            ++   + HP Y  +  N+  V    +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQ 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
             ++L  +  P   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  
Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +   M+R++QGDV
Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFKPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++ R+K  
Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM   +K+ VM  
Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y
Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGCTASFCVLMY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +A       ++
Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
              +  AK ++ + PD+ 
Sbjct: 659 PTVQHYAKSLIQKYPDVA 676


>gi|269798117|ref|YP_003312017.1| ATP-dependent DNA helicase RecG [Veillonella parvula DSM 2008]
 gi|269094746|gb|ACZ24737.1| ATP-dependent DNA helicase RecG [Veillonella parvula DSM 2008]
          Length = 680

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 244/662 (36%), Positives = 382/662 (57%), Gaps = 33/662 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+T +G+G      L K+   G  N T    LL Y P ++ DR    +I ++       +
Sbjct: 5   LTTIKGIGPGREKQLHKL---GITNVT---SLLTYFPRTYEDRRTMYRIGDLKSGMTGGV 58

Query: 73  TGYISQHSSFQLQKRRP------YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            G +       +Q++RP       ++++ DGTG + ++ F +  +  KN + +G++I   
Sbjct: 59  VGTV-----IAVQEKRPRPRLSILEVVIADGTGPLKIVLFNQGYK--KNFYKKGQRIYAY 111

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           GK +     + M  P     N  D   P   I  +Y+L  G+S  + +  +    +    
Sbjct: 112 GKAEFQYGTMQMNTPQ--MENLGDSGEPDRGIVPIYALADGVSQFVVRSSVRNWFAANHE 169

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE +  ++ +   + S  +AF ++H P  ++ ++    AR +LAY+EL   Q  L L+R
Sbjct: 170 LPEILPVEVRESHHYMSRYDAFKMMHFPDSSEHYK---EARHQLAYEELFVMQAGLALLR 226

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            + +   G  +   G++  + + N+PFS T  Q+ A++DI  DM  +  M R+LQGDVGS
Sbjct: 227 SKEQCHRGPKMGPNGELMARCIENLPFSLTGDQQRALEDIRIDMEDERPMQRLLQGDVGS 286

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA + +  A+E G Q  +MAP  ILA QHYE I+    N  I +E++TG+  +  +
Sbjct: 287 GKTIVATLGLLKAIENGYQGALMAPTEILAAQHYEGIRTVCANLGITIELLTGSTTKKEK 346

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
               E +A G  H+IIGTHAL Q+++ ++ L LVI+DEQHRFGV+QR +L QK T PHVL
Sbjct: 347 ECIYEGLADGSIHMIIGTHALIQENVNFHNLGLVIIDEQHRFGVEQRARLQQKGTYPHVL 406

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRT+ L+  GD+ +S I E P GRKP+KT  +  +  D +       ++EG++
Sbjct: 407 IMTATPIPRTMTLSVYGDLAVSLIKEMPPGRKPVKTYAVDSSYKDRLCTFFGKEMAEGRQ 466

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP +EE ++ + ++  E +  L E+F  +  + ++HGRM   +K+ VM++F  G  
Sbjct: 467 VYVVCPLVEESEKLDLQAAEELYLELKEYFYKAYEVGLVHGRMKPSEKDEVMNAFHKGEI 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL++TTVIEVG++V +A+I+ +E AE FGL+QLHQLRGRVGRG   S CIL+     SK
Sbjct: 527 SLLVSTTVIEVGVNVPNATIMCVEGAERFGLSQLHQLRGRVGRGAYQSYCILVSD---SK 583

Query: 603 N--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           N  S  RL +++  +DGF +AE+DL  R  G++ G+ QSG+P   +A       +L  AR
Sbjct: 584 NDVSQERLKLMEQIQDGFELAEQDLLLRGSGQLFGLAQSGLPDLRVANIIKDIEILVEAR 643

Query: 661 KD 662
           KD
Sbjct: 644 KD 645


>gi|190575687|ref|YP_001973532.1| ATP-dependent DNA helicase RecG [Stenotrophomonas maltophilia
           K279a]
 gi|190013609|emb|CAQ47244.1| putative ATP-dependent DNA helicase [Stenotrophomonas maltophilia
           K279a]
          Length = 703

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 249/697 (35%), Positives = 383/697 (54%), Gaps = 35/697 (5%)

Query: 2   RPSFLNPLFAP-----LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH 56
           R + + P+ +P     L+   GVG   +   +K+   G A      DL  + P  + DR 
Sbjct: 3   RKAAVTPVLSPSGEASLAMLAGVGPAVA---AKLQARGLAT---LQDLWLHLPLRYEDRT 56

Query: 57  YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL-----NDGTGEITLLFFYRKTE 111
              +I ++       + G +       +++   Y+ +L     ++G G + L FF+ + +
Sbjct: 57  RLTRIEDLRNGVPAQVEGRV-----VAVERGMRYRPMLKVAVEDEGRGTLVLRFFHFRQQ 111

Query: 112 MLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVD 169
            +   F  G ++   G  K  +  + +VHP Y +   + D      ++ VY    G+   
Sbjct: 112 QVGQ-FAVGNRLRCFGTPKPGQLGLEIVHPSYQVLGRNDDPELGDRLDPVYPTVEGVGPM 170

Query: 170 LFKKIIVEALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSP 223
             +K+I +AL RLP     E +    L     PS+  A   +H P    D       T P
Sbjct: 171 TMRKLIGQALDRLPEESALELLPSGWLDGLGLPSLRSALLTVHRPPPDADLVALAAGTHP 230

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           A+ RLA +ELLA  ++L   R   +     P+   GK+A+ +L+ +PF+ T +Q    K 
Sbjct: 231 AQRRLAMEELLAHHLSLRRQRIALQAHHAPPLAGPGKLAKALLKQLPFALTGAQARVFKQ 290

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           I +D+++ + MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ 
Sbjct: 291 IREDLARPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRG 350

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
           + +   + +  + G +    R K +E++A G+A +++GTHAL Q+++ +  L L IVDEQ
Sbjct: 351 WLEPLGVRIAWLAGKVTGKARAKVMEQVASGEAQVVVGTHALMQEAVVFQDLALAIVDEQ 410

Query: 404 HRFGVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           HRFGV QRL L  K     + PH L+MTATPIPRTL ++   D+D+S I E P GR P++
Sbjct: 411 HRFGVHQRLALRDKGAGGNSVPHQLVMTATPIPRTLAMSEYADLDVSAIDELPPGRTPVQ 470

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           TV +  +R  E+IER+ +   EG++ YW+C  IEE +E +       + SL        +
Sbjct: 471 TVALNNDRRPELIERIALACQEGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRV 530

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++HGR+   +K + M +FK G   LL+ATTVIEVG+DV +AS+++IENAE  GLAQLHQ
Sbjct: 531 GLVHGRLKAAEKLATMVAFKAGDIDLLVATTVIEVGVDVPNASLMVIENAERLGLAQLHQ 590

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG  +S C+LLY  PLS+ +  RL  ++ T DGF+IAE+DL+ R  GE+LG +Q
Sbjct: 591 LRGRVGRGSAVSRCVLLYQAPLSQMARERLQTMRETNDGFVIAEKDLELRGPGELLGTRQ 650

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           +G+  F IA       LL      A+ +L Q P L  
Sbjct: 651 TGLAGFRIADLARDAGLLPGVHDLAERLLDQQPTLAD 687


>gi|331649466|ref|ZP_08350552.1| ATP-dependent DNA helicase RecG [Escherichia coli M605]
 gi|331041964|gb|EGI14108.1| ATP-dependent DNA helicase RecG [Escherichia coli M605]
          Length = 704

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 21  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 74

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 75  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 132

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 133 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 190

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 191 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 248

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 249 ALRAGAQRFHAQPLSTNDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 308

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   AV  G Q  +MAP  +LA+QH    + +     I V  +      
Sbjct: 309 VGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLARKQKG 368

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 369 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 428

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 429 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 488

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 489 ACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMT 548

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 549 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 608

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 609 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 668

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 669 IPEVQRLARHIHERYP 684


>gi|194430068|ref|ZP_03062573.1| ATP-dependent DNA helicase RecG [Escherichia coli B171]
 gi|260846563|ref|YP_003224341.1| ATP-dependent DNA helicase RecG [Escherichia coli O103:H2 str.
           12009]
 gi|194411895|gb|EDX28212.1| ATP-dependent DNA helicase RecG [Escherichia coli B171]
 gi|257761710|dbj|BAI33207.1| ATP-dependent DNA helicase RecG [Escherichia coli O103:H2 str.
           12009]
 gi|323160737|gb|EFZ46673.1| ATP-dependent DNA helicase RecG [Escherichia coli E128010]
          Length = 693

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF  T +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKQTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|332997751|gb|EGK17362.1| ATP-dependent DNA helicase RecG [Shigella flexneri K-272]
 gi|333013286|gb|EGK32658.1| ATP-dependent DNA helicase RecG [Shigella flexneri K-227]
          Length = 693

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/678 (37%), Positives = 377/678 (55%), Gaps = 32/678 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLPTGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNS------QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-- 183
            K    M+HP Y           Q+   P    VY    G+     +K+  +AL  L   
Sbjct: 122 GKYGAEMIHPEYRVQGDLSTLELQETLTP----VYPTTEGVKQATLRKLTDQALDLLDTC 177

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIA 239
            + E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  ++
Sbjct: 178 AIEELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLS 235

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +L +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+    M+R++Q
Sbjct: 236 MLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDVPMMRLVQ 295

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G  
Sbjct: 296 GDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQ 355

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K  
Sbjct: 356 KGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQ 415

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R+
Sbjct: 416 QQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVTIPDTRRTDIIDRV 475

Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++V
Sbjct: 476 RHACITEGRQAYWVCTLIEESELLEAQAAKATWEELKLALPELNVGLVHGRMKPAEKQAV 535

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 536 MASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 595

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      
Sbjct: 596 LLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQ 655

Query: 654 SLLEIARKDAKHILTQDP 671
           +++   ++ A+HI  + P
Sbjct: 656 AMIPEVQRLARHIHERYP 673


>gi|332304825|ref|YP_004432676.1| ATP-dependent DNA helicase RecG [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172154|gb|AEE21408.1| ATP-dependent DNA helicase RecG [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 701

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/651 (38%), Positives = 379/651 (58%), Gaps = 26/651 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG K +  L K+            DLLF+ P  + DR     I+++      +
Sbjct: 18  PVTQLKGVGSKVAEKLEKL------GLHSVQDLLFHLPHRYEDRTRIYPIADLMPHLHTS 71

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +      Q  ++R   + ++D TG ITL FF+      KN   +G  I   G+++ 
Sbjct: 72  VEGEVMS-CDVQFGRKRMLIVRMSDSTGTITLRFFHFSAAQ-KNSLEKGTHIRCFGEVRA 129

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPV--LP 186
            K  + ++HP Y    S D +  L E+   VY    G+     + +  +AL  L    L 
Sbjct: 130 GKYGLEIMHPEYKI-ISTDSSVQLAESLTPVYPSTEGVKQVTLRNLTEQALGLLDKGGLA 188

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +  D+ Q++    + EA +++H P          E   PA++RLA +ELLA  +++L 
Sbjct: 189 ELLPNDVYQQQV--GLIEALHLVHRPPPDVTLALLEEGKHPAQQRLALEELLAHHLSVLK 246

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+Q +++ G  I     +  ++L ++PF  T +Q+  I+DI QDM +   M+R++QGDV
Sbjct: 247 VRQQSQQQKGFAITPSNPLLTQLLDSLPFDLTGAQQRVIQDIQQDMQRPTPMMRLVQGDV 306

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A  +A+ AG Q V+MAP  +LA+QH    + +     I V  + G +   
Sbjct: 307 GSGKTLVAAMAALSAISAGYQVVMMAPTELLAEQHMNNFQGWFAPLGIEVGWLAGKLKGK 366

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R + LE +A G+  +++GTHA+FQ+++QY  L LVIVDEQHRFGV QRL L +K     
Sbjct: 367 ARNETLENLASGKLQLLVGTHAVFQEAVQYQSLALVIVDEQHRFGVHQRLALREKGLQQD 426

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T+  D+D S I E P GR PI TV++P  R  +V+ER+++ 
Sbjct: 427 AFPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPITTVVLPETRRVDVVERVRLA 486

Query: 479 LSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             E G++ YW+C  IEE +    ++  E   +L        + ++HGR+   +K+ +M+ 
Sbjct: 487 TVEHGRQTYWVCTLIEESEVLQSQAAEETAIALATALPELKVGLVHGRLKADEKQRLMEQ 546

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L+Y
Sbjct: 547 FKAGEMDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVESHCVLMY 606

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             PL+K +  RL+VL+ + DGF IA++DL+ R  GE+LG KQ+G+    IA
Sbjct: 607 QSPLTKVAAKRLAVLRESHDGFYIAQQDLEIRGPGELLGTKQTGLADLRIA 657


>gi|251793133|ref|YP_003007861.1| ATP-dependent DNA helicase RecG [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534528|gb|ACS97774.1| ATP-dependent DNA helicase RecG [Aggregatibacter aphrophilus
           NJ8700]
          Length = 693

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 259/677 (38%), Positives = 382/677 (56%), Gaps = 30/677 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  L K+   G  N     DLLF+ P  + DR     I ++  E+  T
Sbjct: 10  PLTAISGVGAAIAEKLGKL---GILN---LQDLLFHLPLRYEDRTRITPIIDLRPEQYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G + Q +  Q  +R      L+DG+ ++ L FF     M KN    G ++   G++++
Sbjct: 64  IEGVV-QSTEVQFGRRPMLMTYLSDGSAKLALRFFNFNAGM-KNSLQLGARVKAFGEVRR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFPLI-----EAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            +    M HP Y I H+    N PL+       +Y    GL     +K+I +AL  L   
Sbjct: 122 GRFMAEMHHPEYQIIHD----NKPLVLSETLTPIYPTTEGLKQTSLRKLIAQALQVLEKT 177

Query: 186 PEWIEKDLLQKKSFP-SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIAL 240
           P   E   ++    P  +  A   +HNP      E       PA++RL ++ELLA  +A+
Sbjct: 178 P-LAELWPVEFNPHPFDLKSAIQFLHNPPPDVSLETLEEGKHPAQQRLIFEELLAYNLAM 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R   ++    P+  +  + Q+ L  +PF+PT +Q    ++I +D+ Q   M+R++QG
Sbjct: 237 QKVRLGIQENFAEPLRAQSDLKQRFLAQLPFTPTHAQLRVTQEIEEDLQQNYPMMRLVQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA +A   A++ G Q V+MAP  ILA+QH    +++ +   I V  + G + 
Sbjct: 297 DVGSGKTLVAALAALTAIDNGKQVVLMAPTEILAEQHATNFRRWFEPLGIDVGWLAGKVK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R   LERI +G+  +++GTHALFQD ++++ L LVIVDEQHRFGV QRL L +K   
Sbjct: 357 GKQRTVELERIKNGRVQMVVGTHALFQDEVKFHNLSLVIVDEQHRFGVHQRLMLREKGNQ 416

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T   D+D S I E P GR PI T+ I  +R   +IER+ 
Sbjct: 417 AGVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTIAISEDRRANIIERVN 476

Query: 477 VVLSEGKK-AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
              +E K+ AYW+C  I+E +    ++       L +      I ++HGRM   +K+ +M
Sbjct: 477 RACTEEKRQAYWVCTLIDESEVLEAQAAEAVAEDLRKILPHLRIGLVHGRMKPAEKQEIM 536

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L
Sbjct: 537 QEFKDANLDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGTTASFCVL 596

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +Y PPL K S  RL V+++T+DGF+I+E+DL+ R  GE+LG KQ+G+ +F +A       
Sbjct: 597 MYKPPLGKISQKRLQVMRDTQDGFVISEKDLEIRGPGEVLGTKQTGITEFKVANLMRDRK 656

Query: 655 LLEIARKDAKHILTQDP 671
           +L   +  AK ++ + P
Sbjct: 657 MLPTVQFYAKQLVQKYP 673


>gi|253700922|ref|YP_003022111.1| ATP-dependent DNA helicase RecG [Geobacter sp. M21]
 gi|251775772|gb|ACT18353.1| ATP-dependent DNA helicase RecG [Geobacter sp. M21]
          Length = 772

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 258/699 (36%), Positives = 394/699 (56%), Gaps = 40/699 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI---- 64
           L  P+ + +GVG K +  LSK     N  E    D L+  P+ + DR    KI+++    
Sbjct: 72  LKTPMQSIKGVGPKLAATLSK--KGLNTVE----DALYLLPNRYEDRRELKKIAQLRPGN 125

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           SE    T+    +Q +      RR ++ ++ D TG + L +F+     L      GRK  
Sbjct: 126 SEAFFATVVSAGAQTTK---GGRRYFEAIVKDETGSLPLKWFHFHPNFLAKQLVPGRKGI 182

Query: 125 VTGKIKKLKNRIIMVHPHYIFH-NSQDV---------NFPLIEAVYSLPTGLSVDLFKKI 174
             G + +   +  M HP   +    +D+         NF  I  VY L  G+S  + ++I
Sbjct: 183 FIGDVAQFGFQREMHHPEVEWAVEGEDLSQVMARDPDNFGSILPVYPLTEGVSQKVMRRI 242

Query: 175 IVEALSRLP-----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPAR 225
           + +A+ R        LP+    +LL++     +  A    H P +  D        S A 
Sbjct: 243 MRDAVQRYSRYVKGALPD----ELLRRHQLLPLPVALRDAHLPAQDSDLSALNSGRSAAH 298

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
             LA+DEL   Q+ L L ++    E GI   V  +  +++L+ +PFS T +Q+  + +I 
Sbjct: 299 RSLAFDELFFLQMGLALKKRGIAVEDGISFQVTHRYTKELLKLLPFSLTAAQKRVLSEIK 358

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
           +DM   + M R++QGDVG GKTLVAL+A    VE   Q  IMAP  +LA+QHY  I  Y 
Sbjct: 359 EDMMSPHPMHRLVQGDVGCGKTLVALMAALVCVENDYQVAIMAPTELLAEQHYLNIHGYC 418

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +N  I V ++T ++    +   L++IA G   I++GTHA+ Q+ +++ +L L I+DEQHR
Sbjct: 419 ENLGINVALLTASV--KGKGDTLDKIASGATQIVVGTHAVIQEKVEFNRLGLGIIDEQHR 476

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV QR  L +K   P +L+MTATPIPRTL +T  GD+ +S I E P GR PI+T ++  
Sbjct: 477 FGVVQRALLKKKGANPDILVMTATPIPRTLSMTVFGDLSLSVIDELPPGRTPIETRMVRE 536

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHG 523
           +R  EV   ++   ++G++AY I P +EE ++S+ ++ V+    L +       +A++HG
Sbjct: 537 SRRKEVYALVREEAAKGRQAYVIYPLVEETEKSDLKAAVQMAEHLAQEVFPDLRVAVLHG 596

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           RM   +KE+VM  FK G+  +L+ATTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRV
Sbjct: 597 RMPAAEKEAVMKEFKAGSTDILVATTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRV 656

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG E S CILL    LS++   RL V+  + DGF+IAE DL+ R  G+ LG +Q+G+P+
Sbjct: 657 GRGSERSRCILLAGDKLSEDGQKRLEVMVQSSDGFVIAEADLQIRGPGDFLGTRQAGLPE 716

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
             +A       +LE ARKDA  ++ +DP+LT+   + +R
Sbjct: 717 LRVADILRDGGVLEQARKDAFALVERDPELTAPGHERLR 755


>gi|227113295|ref|ZP_03826951.1| ATP-dependent DNA helicase RecG [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 693

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/692 (36%), Positives = 390/692 (56%), Gaps = 38/692 (5%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   LN    PLST  GVG   +  L+++       ET   DLL + P  + DR +   
Sbjct: 1   MKGRLLN--TQPLSTLTGVGASQAAKLARL-----GLET-VQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      T+ G I + +      RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGDLLPGMYATVEGEILR-NDITFGSRRMLTCQISDGSGMLTMRFFNFSAAM-KNSLAPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++T  G+IK+ K    ++HP Y +  +S  V     +  VY    G+     +K+  +A
Sbjct: 111 QRVTAYGEIKRGKIGAEIIHPEYRVQGDSTQVELQESLTPVYPSTEGVRQATLRKLTDQA 170

Query: 179 LSRL------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARE 226
           L+ L       +LPE + + L+      S+ +A   +H P    D + +       PA++
Sbjct: 171 LALLDANHIDELLPESLSRSLI------SLPDALRTLHRP--PPDMQLSELEHGKHPAQQ 222

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286
           RL  +ELLA  +++L +R   ++    P+  +  + Q++L  +PF PT++QE  + +I  
Sbjct: 223 RLIMEELLAHNLSMLAVRAGEQRHKASPLQAQDGLKQQLLAALPFKPTQAQERVVAEIEA 282

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           DM++   M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +
Sbjct: 283 DMAKDFPMMRLVQGDVGSGKTLVAALAALRAIANGKQVALMAPTELLAEQHAHNFRQWFE 342

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              + V  + G      R+   + IA GQ  +++GTHA+FQ  +Q+  L LVI+DEQHRF
Sbjct: 343 PLGLEVGWLAGKQKGKARQAQQDAIASGQVSMVVGTHAIFQQQVQFNGLALVIIDEQHRF 402

Query: 407 GVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           GV QRL L +K        H L+MTATPIPRTL +T+  D+D S I E P GR P+ TV 
Sbjct: 403 GVHQRLALWEKGEEQGFYAHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVA 462

Query: 463 IPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520
           IP +R  ++IER+      EG++AYW+C  IEE      ++       L     +  + +
Sbjct: 463 IPDSRRSDIIERVNNACQQEGRQAYWVCTLIEESDLLEAQAAEATSEELKAALPNLKVGL 522

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGRM   +K++VM +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLR
Sbjct: 523 VHGRMKAQEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLR 582

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG   S C+LLY  P+SK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G
Sbjct: 583 GRVGRGAVASHCVLLYKTPMSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTG 642

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
             +F +A       L+   ++ A+H+    P+
Sbjct: 643 NAEFKVADLLRDQELIPQVQRVARHLHEHYPE 674


>gi|255022098|ref|ZP_05294102.1| ATP-dependent DNA helicase RecG [Acidithiobacillus caldus ATCC
           51756]
 gi|254968456|gb|EET26014.1| ATP-dependent DNA helicase RecG [Acidithiobacillus caldus ATCC
           51756]
          Length = 662

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/640 (37%), Positives = 366/640 (57%), Gaps = 6/640 (0%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
            R  DLLF+ PS + DR     +  +   +   + G I      Q  +R  + ++L D  
Sbjct: 11  VRVEDLLFHLPSRYQDRRQLHAMGRLQAGQEAAVLGEILDIRP-QPGRRPQWCVVLGDDR 69

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157
           G +  L F+    ++++ +  GR++   G+++   N + MVHP +   ++ D   P  + 
Sbjct: 70  GAVLQLRFFHWVGVMRSQWRPGRRLWCFGEVRVGGNGLEMVHPEWQLADTPDFCLPDRLT 129

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
             Y    G++   ++     AL+    L +      L    +PS+  +   +H    A  
Sbjct: 130 PFYPSVAGITQAHWRAWTDAALALSDELLD--PLLHLLPAGWPSLKASLYRLHRSADAVP 187

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +   PAR+RLA DELLA  +AL   R+  +      +   G   +++ + +PF PT +Q
Sbjct: 188 GD-ADPARQRLALDELLAHYLALREERRLRRCLPAPVLAAPGAYWERLRQTLPFVPTAAQ 246

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              I +I  D+     M R++QGDVGSGKTLVA+ A+  AVEAG Q  +MAP  ILA+Q 
Sbjct: 247 LRVIAEIRADLGATAPMRRLVQGDVGSGKTLVAVAALLQAVEAGYQVALMAPTEILARQL 306

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           ++ ++ + QN  +   ++ G+     RR  L  +A G+  I+ GT ALFQ+ + Y +L L
Sbjct: 307 HQRLEDWLQNLGLRAGLLLGSCSAKERRPLLRALADGELAIVCGTQALFQEGVDYARLGL 366

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI+DEQHRFGV+QR +L  K + PH+L++TATPIPRTL +T   D+D+S I   P GR+P
Sbjct: 367 VIIDEQHRFGVEQRRRLMAKGSMPHLLILTATPIPRTLAMTLHADLDLSVIDSLPPGRQP 426

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           + TV++P  R DE+I R++ VL+EG++ YW+C  IE  +    ++  + +  L       
Sbjct: 427 VATVVLPDTRRDELIARMRNVLAEGRQIYWVCQLIENSELLELQAAEDSYTELCRALPEV 486

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I ++HGR+   +K+  M  F  G  ++L+ATTVIEVG+DV  AS++IIE+AE  GL+QL
Sbjct: 487 RIGLVHGRLPAEEKQRRMRDFVGGATQILVATTVIEVGVDVPAASLMIIEHAERLGLSQL 546

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG   S+CILLY PPLS  +  RL V++++ DGF IA +DL+ R  GE+LG+
Sbjct: 547 HQLRGRVGRGATQSACILLYRPPLSARARQRLQVIRSSHDGFFIARKDLEMRGPGELLGV 606

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           +QSG     +A P   ++LLEI     +++L   P+   V
Sbjct: 607 RQSGERALRVADPLRDEALLEIVPDLGENLLRTQPEAAGV 646


>gi|254788371|ref|YP_003075800.1| ATP-dependent DNA helicase RecG [Teredinibacter turnerae T7901]
 gi|237685871|gb|ACR13135.1| ATP-dependent DNA helicase RecG [Teredinibacter turnerae T7901]
          Length = 677

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 238/634 (37%), Positives = 368/634 (58%), Gaps = 30/634 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLF+ P  ++DR     + ++     V I G + + +     ++R   + L D +G+ T
Sbjct: 19  DLLFHLPLRYLDRTRITPLGQLQLNTSVMIQGAVLR-TQVTFGRKRSLLVQLEDESGQ-T 76

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-----LIE 157
            L FY  T   K+    G  +   G+ +   + +   HP Y   +  D   P      + 
Sbjct: 77  CLRFYHFTAYQKDRLEPGTLLRCYGEPRLGSSGLEFYHPEY---DVIDAAAPPPLDNTLT 133

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
            VY L  G+S    + +I + L+++   P  E++ +D+ Q+ +  S++EA   +H P  +
Sbjct: 134 PVYGLTEGVSQQRMRSVIEQVLAKIKQSPPDEYLPRDVNQRFACESLSEALLCVHQPPHS 193

Query: 216 KD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
                  E   P+++RLAY+ELLA  +    +     ++    + ++  + ++ L  +PF
Sbjct: 194 VQVKSLLEGHHPSQQRLAYEELLAHFLVKRKLHAIAARQKAPRLTLDTSLQERFLAQLPF 253

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
           + T +Q+   ++I  D++  + MLR++QGDVGSGKTLVA +A  A +++G Q  ++AP  
Sbjct: 254 ALTGAQQRVCREIFNDLANGSPMLRMVQGDVGSGKTLVAALAALAGIDSGFQVAVVAPTE 313

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+QH+     +       VE + G +  A RR ALERIA G+A +I+GTHALFQ+ + 
Sbjct: 314 ILAEQHFRNFDGWLSGLGFQVEWLVGKLTVAKRRNALERIASGEAQVIVGTHALFQEGVN 373

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISK 447
           + +L L IVDEQHRFGV QRL L +K  A    PH L+MTATPIPRTL + +  ++D S 
Sbjct: 374 FARLGLSIVDEQHRFGVDQRLSL-RKTNADDQLPHQLVMTATPIPRTLAMAAYAELDYSV 432

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P GR P+ TV+I   R  +V+ER++   +EG++ YW+C  +EE +     +  +  
Sbjct: 433 IDELPPGRTPVNTVLISQRRRAQVVERIRAACAEGRQVYWVCTLVEESESLAAANAEQTA 492

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           + L E     +I ++HGR+   +KE+VM +FK    +LL+ATTVIEVG+DV +AS++IIE
Sbjct: 493 SELREALADIAIGLVHGRLKATEKETVMAAFKAAELQLLVATTVIEVGVDVPNASLMIIE 552

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           N E  GLAQLHQLRGRVGRG   S C+LLY   LS+ +  RL VL+ T DGFL+AE+DL+
Sbjct: 553 NPERLGLAQLHQLRGRVGRGTTASHCVLLYGDKLSEQARQRLQVLRETNDGFLVAEKDLQ 612

Query: 627 QRKEGEILGIKQSGMPKFLIAQ--------PELH 652
            R  GE+LG +Q+G  ++ +A         PE+H
Sbjct: 613 LRGPGEVLGTRQTGDMQYRVADMVRDEHLLPEIH 646


>gi|159903548|ref|YP_001550892.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
           9211]
 gi|159888724|gb|ABX08938.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT
           9211]
          Length = 815

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 249/695 (35%), Positives = 394/695 (56%), Gaps = 41/695 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + LST +G+G K    L+ +            DLL ++P  ++D     +IS +    
Sbjct: 116 LDSTLSTVKGIGSKTIELLASL------GIFTIRDLLVHYPRDYVDYSQLKRISSLEAGE 169

Query: 69  IVTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFY------RKTEMLKNV-- 116
             TI   I + + F    R P     ++L+ D TG I L  F+       +  ++K V  
Sbjct: 170 TATIVASIRRTNYFT-SPRNPNLSVLELLIQDSTGRIKLTKFFAGRRFSNRGYLMKQVSQ 228

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-----LIEAVYSLPTGLSVDLF 171
           +  G  + V+G +K+       + P      +Q  +        +  +Y L  GL+    
Sbjct: 229 YPTGSTVAVSGLVKEGSYGKCFIDPIIEVLENQGTSIKSKSIGRLIPIYPLTEGLTAVRI 288

Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
           +++    L       + + ++ +   S  SI  A N IH P    + E  + AR R+ +D
Sbjct: 289 RRVFDLVLPFAAFWKDPLPQERISHHSLMSIQNAMNQIHQP---NNLESLNAARRRIVFD 345

Query: 232 ELLAGQIALLLMRKQFKKEIGI---PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
           E L  Q+ALL  R  F+K+       +N    +  +    +PFS T  Q+  + +I  D+
Sbjct: 346 EFLCLQLALLRKRNLFRKKPAPQLKKVNQINSLTSQFYSLLPFSFTNEQKRVLHEIESDL 405

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
                M R+LQGDVGSGKT+VA+ A+  AV++G Q  +MAP  +LAQQHY+ + K+    
Sbjct: 406 ESSEPMARLLQGDVGSGKTVVAIAALLYAVDSGWQGALMAPTEVLAQQHYKNLCKWLPQL 465

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            + V++ITG+ P + R++ L+ ++ G  +II+GTHAL +DS+ + +L LV+VDEQHRFGV
Sbjct: 466 HVTVDLITGSTPNSRRKQILDDLSTGGVNIIVGTHALIEDSVSFSRLGLVVVDEQHRFGV 525

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            QR  L +K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR+ IKT ++  ++ 
Sbjct: 526 YQRDLLLRKGLQPHLLTMTATPIPRTLALSIHGDLDVSQINEMPPGREKIKTSMLQFSQR 585

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF----NSLHEHFTSSIAIIHGR 524
           ++V + ++  + +  + Y++ P +EE ++   RS V+ +    N L + F  ++ ++HGR
Sbjct: 586 NKVFDLIRAHIKKRHQVYFVLPLVEESEKIELRSAVDVYHELSNDLFQEF--NVGLLHGR 643

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           MS +DK S ++SF +G   +L++TTVIEVG+DV +A++++I++A+ FGLAQLHQLRGRVG
Sbjct: 644 MSSLDKNSTINSFVSGEVDILVSTTVIEVGVDVPNATLMVIDHADRFGLAQLHQLRGRVG 703

Query: 585 RGEEISSCILLYHPPLSKNSYTR--LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           RG   S CIL+      KNS +R  L  L  + DGF I+E DL+ R  G++LG +QSG+P
Sbjct: 704 RGASFSECILIDS---GKNSDSRKKLEYLVGSTDGFEISEIDLRMRGPGQVLGTRQSGLP 760

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            F +A       +LE+ARK+A +IL  DP+L S +
Sbjct: 761 DFALANLVNDSHVLELARKEALYILNSDPELNSYK 795


>gi|311277428|ref|YP_003939659.1| ATP-dependent DNA helicase RecG [Enterobacter cloacae SCF1]
 gi|308746623|gb|ADO46375.1| ATP-dependent DNA helicase RecG [Enterobacter cloacae SCF1]
          Length = 693

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 379/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS   GVG   +  L+KI   G  N     DLL + P  + DR +   I+++      T
Sbjct: 10  PLSALTGVGAAQTNKLAKI---GLHN---VQDLLLHLPLRYEDRTHLYTINDLLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DGTG +T+ FF     M KN    G+++   G+ ++
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLAAGKRVLAYGEARR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPALQETLTPVYPTTEGVRQATLRKLTDQALDLLETCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P  +    D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPSLQLSDLESGQHPAQRRLIMEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    + Q +L  +PF PT +Q   + +I  DM+Q   M+R++QGD
Sbjct: 238 ALRAGAQRYHAQPLSPRDNLKQALLDALPFRPTGAQARVVGEIEHDMAQDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGNQVALMAPTELLAEQHANNFRAWFAPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I   R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIADTRRSDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE +    ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTAEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   LLIATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 GFKQGELHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQMRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAI 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPDVQRIARHIHEKYP 673


>gi|307244280|ref|ZP_07526395.1| ATP-dependent DNA helicase RecG [Peptostreptococcus stomatis DSM
           17678]
 gi|306492430|gb|EFM64468.1| ATP-dependent DNA helicase RecG [Peptostreptococcus stomatis DSM
           17678]
          Length = 685

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 247/649 (38%), Positives = 374/649 (57%), Gaps = 19/649 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           D L+Y P  F DR  + KI ++ E     +   I + +S   +  R  +  ++D TG+  
Sbjct: 33  DALYYFPRQFEDRSRQKKIFQLEEGEKTGVRVKIDRINSVNRRGLRITEFYVSDDTGKAK 92

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
           L+FF +    L+N F  G  +   G +KK    I  +H   I ++  D N  +I  VYSL
Sbjct: 93  LVFFNKA--YLRNTFRVGDIVKAFGSVKKNLGPITELHNCEIEYDKIDKNTGIIVPVYSL 150

Query: 163 PTGLS----VDLFKKIIVEA-LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
             G+     + + + I   + +S    LP+WI    + K +   +  A   +H P K   
Sbjct: 151 TAGVGNKEVMGMIRNIFESSDISIDEYLPKWI----VDKYNLCGVDFAIRNMHFPEKK-- 204

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            E    A  RL ++ELL  Q+ L  ++   K   GI       +  KI  N+PF  T++Q
Sbjct: 205 -ENVKIAMYRLIFEELLFLQLGLFAVKGNNKVSKGIKFKRHEDM-DKIEENLPFRLTRAQ 262

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           + A  DI+ DM+    M R++QGDVGSGKT+VA +A+A  V  G Q   MAP  ILA+QH
Sbjct: 263 KKAYDDIMADMTSDRIMNRLVQGDVGSGKTVVAQLALANCVLNGYQGAYMAPTEILAKQH 322

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E  K++  NT I VE++TG+  +    + L+ +A GQ  I+IGTHAL +D + +  L L
Sbjct: 323 MESFKEFFDNTGIRVEVLTGSSTRKEASEILKDLASGQIDILIGTHALIEDRVDFANLGL 382

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR +LT K+  P VL+MTATPIPRTL L   GD+DIS I E P GRKP
Sbjct: 383 VITDEQHRFGVNQRGRLTSKSENPDVLVMTATPIPRTLALILYGDLDISIIDELPPGRKP 442

Query: 458 IKTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           I+T+ I   + +   + +++  + +G++ Y +CP +EE +  + +S  E ++ L   F  
Sbjct: 443 IETLAIEKRKRESYYMSKVRSEIEKGRQVYVVCPLVEESETLDLKSASEVYDELRGDFFK 502

Query: 517 S--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              + ++HG+M   +K+ VM++FKN    +L++TTVIEVG++V +AS++IIENAE FGLA
Sbjct: 503 DLRVGLLHGKMKASEKDQVMEAFKNHELDILVSTTVIEVGVNVPNASLMIIENAERFGLA 562

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG E S C L+Y    ++    R+++++ T DGF I+E+DL+ R  G+  
Sbjct: 563 QLHQLRGRVGRGSEKSYCTLIYGSK-TEICRHRMAIMEETNDGFKISEKDLELRGPGDFF 621

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           G +Q G+P+  +A    H  +L + +K+A+ I  +DP L     + +R+
Sbjct: 622 GTRQHGLPELRVANLFKHMKILRLVQKEAREIYAEDPSLRLKENEGLRL 670


>gi|183597036|ref|ZP_02958529.1| hypothetical protein PROSTU_00271 [Providencia stuartii ATCC 25827]
 gi|188023695|gb|EDU61735.1| hypothetical protein PROSTU_00271 [Providencia stuartii ATCC 25827]
          Length = 693

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 258/680 (37%), Positives = 385/680 (56%), Gaps = 36/680 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+T  GVG   S  LSKI      N  +  DLL + P  + D     +I ++      TI
Sbjct: 11  LTTLHGVGASQSEKLSKI----GLNTVQ--DLLLHLPLRYEDHTRLYQIRDLLPGTTATI 64

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G + Q +     ++R    L+ DGTG +TL FF     M KN   EGR +   G++++ 
Sbjct: 65  VGEVLQ-TKVVFGRKRMMTCLITDGTGNLTLRFFNFSAAM-KNSLAEGRHVIAYGEVRRG 122

Query: 133 KNRIIMVHPHYIFHNSQDV-NFPLIE---AVYSLPTGLSVDLFKKIIVEALSRLP----- 183
                ++HP Y    SQD  N  L E    VY    G+     +K+I +AL  L      
Sbjct: 123 NTGPEIIHPEYKV--SQDTSNISLQENLTPVYPTTEGVRQATLRKLIEQALKLLEGGQIK 180

Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQI 238
            +LPE + + L+      S+ +A  ++H P          +   PA++RL  +ELLA  +
Sbjct: 181 ELLPEELSRGLI------SLPDAIRLLHTPPPDVALSELEKGQHPAQKRLILEELLAHHL 234

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           ++L +R   ++    P+ + G++  + L ++PF+PT +Q   + +I QD+ +   M+R++
Sbjct: 235 SMLAIRAGHQRLYAQPMVITGQLKSQFLASLPFTPTHAQIRVVGEIEQDLIKDAPMMRLI 294

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A  +A+E G Q  +MAP  ILA+QH    K + +   I V  + G 
Sbjct: 295 QGDVGSGKTLVAALAALSAIENGKQVALMAPTEILAEQHANNFKLWFEPLGINVGWLAGK 354

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R +  E IA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL L +K 
Sbjct: 355 QKGKAREQQQEAIAKGEVSMVVGTHALFQEHVTFKALGLVIIDEQHRFGVHQRLALREKG 414

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                 PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++IER
Sbjct: 415 EQQGFHPHQLIMTATPIPRTLAMTAYADMDTSIIDELPPGRTPVTTVAIPDTRRKDIIER 474

Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           ++   + EG++AYW+C  I++      ++     + L        + ++HGRM   +K+S
Sbjct: 475 VRQACIDEGRQAYWVCTLIDDSDVLEAQAAQATSDELALALPELKVGLVHGRMKPAEKQS 534

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M +FKN   +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S C
Sbjct: 535 IMAAFKNNEIQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHC 594

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY  PL+  +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G   F +A     
Sbjct: 595 VLLYKTPLTHTAKQRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNVDFKVADLLRD 654

Query: 653 DSLLEIARKDAKHILTQDPD 672
             +L   ++ A+HI    P+
Sbjct: 655 QYMLPEVQRIARHIQQNYPE 674


>gi|152998896|ref|YP_001364577.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS185]
 gi|151363514|gb|ABS06514.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS185]
          Length = 696

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 250/680 (36%), Positives = 387/680 (56%), Gaps = 30/680 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +     
Sbjct: 11  LVPITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGSY 64

Query: 70  VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            TI   I    S Q+ + R   ++ N  D TG ++L FF       +N    G  I   G
Sbjct: 65  GTIEAEIQ---STQIIQGRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYG 120

Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           ++++  ++  +VHP Y + +  +DV+    +  +Y    GL    + K+  +AL    +L
Sbjct: 121 EVRRGGHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALV---LL 177

Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQI 238
            +    +LL  +  P   S+ +A   +H P       D E    PA++RL  +ELLA  +
Sbjct: 178 EDGGLTELLPPQLQPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNL 237

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           ++L +R++   +  + +   G++    L  +PF PT +Q+  + DI +D+ + + M+R++
Sbjct: 238 SMLRLRQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLV 297

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G 
Sbjct: 298 QGDVGSGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGK 357

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +K 
Sbjct: 358 LKGKARTQSLADIESGAAQMVIGTHAIFQQHVVFNKLALIIIDEQHRFGVHQRLGLREKG 417

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R +EV+ER
Sbjct: 418 VSQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLER 477

Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           ++  V+++ ++AYW+C  IEE +    ++  +    L       +I ++HGR+   +K+ 
Sbjct: 478 VRNAVITDKRQAYWVCTLIEESEVLECQAAEDTAEELRLALPELNIGLVHGRLKSAEKQQ 537

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M  FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C
Sbjct: 538 IMADFKAGIIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHC 597

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY  PLS  +  RLSVL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA     
Sbjct: 598 VLLYKAPLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 657

Query: 653 DSLLEIARKDAKHILTQDPD 672
            +L+   +K A H++ Q P+
Sbjct: 658 QALIPHIQKLANHVMAQAPE 677


>gi|290502|gb|AAA62005.1| DNA recombinase [Escherichia coli]
          Length = 693

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/676 (37%), Positives = 378/676 (55%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I   P GR P+ TV IP  R  ++I+R+  
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDXXPPGRTPVTTVAIPDTRRTDIIDRVHH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL V +++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVXRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|113968698|ref|YP_732491.1| ATP-dependent DNA helicase RecG [Shewanella sp. MR-4]
 gi|113883382|gb|ABI37434.1| ATP-dependent DNA helicase RecG [Shewanella sp. MR-4]
          Length = 696

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/679 (37%), Positives = 391/679 (57%), Gaps = 28/679 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV K+ +  L+K+        T   DLLF+ P  + DR     I+ +     
Sbjct: 11  LVPITDLKGVAKRVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGNY 64

Query: 70  VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            TI   I    S Q+ + R   ++ N  D TG ++L FF       +N    G  I   G
Sbjct: 65  GTIEAEIQ---STQIIQGRKRMLVCNVRDNTGSMSLRFFNFSMAQ-RNAMQNGLMIRAYG 120

Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP-- 183
           +I++  ++  +VHP Y I +  +D++    +  +Y    GL    + K+  +AL  L   
Sbjct: 121 EIRRGNHQAEIVHPEYKIVYPGEDIHLSDTLTPIYPTTEGLKQASWIKLTEQALELLEDG 180

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQIA 239
            L E +  +L Q  S  S+ +A   +H P       D E    PA++RL  +ELLA  ++
Sbjct: 181 GLTELLPTNL-QPNSM-SLKQALQTLHRPHAGISQFDLELGQHPAQQRLVQEELLAHNLS 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +L +R++   +  + +   G++    L ++PF PT +Q+  + +I +D+ Q + M+R++Q
Sbjct: 239 MLRLRQRSNLDAAVTMLASGQLLNPFLASLPFKPTGAQQRVVAEIGKDLEQPHPMMRLVQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +
Sbjct: 299 GDVGSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAANFAAWFEPLGLKVGWLAGKL 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QR+ L +K  
Sbjct: 359 KGKARAQSLADIESGDAQMVIGTHAIFQQQVTFNKLALIIIDEQHRFGVHQRMGLREKGI 418

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R +EV+ER+
Sbjct: 419 NQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDSRRNEVLERV 478

Query: 476 K-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +  V+++ ++AYW+C  IEE +    ++  +    L +     SI ++HGRM   +K+ +
Sbjct: 479 RNSVVTDKRQAYWVCTLIEESEVLECQAAEDTAEELRQALPELSIGLVHGRMKSAEKQKI 538

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FK GT  LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 539 MADFKAGTIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 598

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLS+ +  RL+VL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA      
Sbjct: 599 LLYKAPLSQTASQRLNVLRQSNDGFVIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQ 658

Query: 654 SLLEIARKDAKHILTQDPD 672
           +L+   +K A H++ Q P+
Sbjct: 659 ALIPHIQKLASHVMAQAPE 677


>gi|22298277|ref|NP_681524.1| DNA recombinase [Thermosynechococcus elongatus BP-1]
 gi|22294456|dbj|BAC08286.1| DNA recombinase [Thermosynechococcus elongatus BP-1]
          Length = 804

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 244/692 (35%), Positives = 393/692 (56%), Gaps = 33/692 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI--DLLFYHPSSFIDRHYRPKISEI 64
            PL   L T  G+G++    +        A    +   DL++Y P   ID   +  I ++
Sbjct: 98  RPLDQGLKTLHGIGEQLRCVVGDRTAAQLAKLGLYTVADLIYYFPRDHIDYARQVPIRQL 157

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                VT+ G + +   F   +     IL   L D TG+I L  FY      +  + E +
Sbjct: 158 QAGETVTLVGQVRRCKCFTSPRNAKLTILEIILQDRTGQIRLTRFYAGARYAQRGWQEQQ 217

Query: 122 K--------ITVTGKIKKLK--------NRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG 165
           K        +  +G +K+ K           ++ HP     +   +    I  +Y L  G
Sbjct: 218 KRLYAPQTLVAASGLVKQTKYGLTLEEPELEVLEHPGAEIDS---LTIGRIVPIYPLTEG 274

Query: 166 LSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225
           +S D+ ++ +   L  +   P+ + + L Q      +  A   IH P    D    S AR
Sbjct: 275 VSPDVIRRAVARVLPLVQGYPDPLPQALCQHHQLIPLDTALRYIHFP---PDQTQLSLAR 331

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            RL +DE    Q+ LL  R+Q ++++ +P+  +G++ ++  + +PF  T +Q+  + +IL
Sbjct: 332 RRLIFDEFFYLQLGLLQRRRQQQQQVSVPLKPQGELIEQFYQRLPFQLTGAQQRVVAEIL 391

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D+ +   M R+LQGDVGSGKT+VA+IA+ AAV++G Q  +MAP  +LA+QHY  + ++ 
Sbjct: 392 ADLERPIPMNRLLQGDVGSGKTVVAVIALLAAVQSGYQGALMAPTEVLAEQHYRKLFEWL 451

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
               + VE++TG++  A RR+ L+++A G+  +++GTHAL Q+ +++ +L LV++DEQHR
Sbjct: 452 TPLHVPVELLTGSVRTAKRRQILDQLATGELPVLVGTHALIQEGVRFQRLGLVVIDEQHR 511

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV QR KL  K   PHVL MTATPIPRTL LT  GD+++S+I E P GR+PI+T I  +
Sbjct: 512 FGVAQRAKLQAKGVLPHVLTMTATPIPRTLALTLHGDLEVSQIDELPPGRRPIQTTI--L 569

Query: 466 NRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAII 521
            R D     + ++  +++G++AY I P +EE ++ + +S +     L      +  + ++
Sbjct: 570 GRGDRCCAYDLIRREVAQGRQAYIILPLVEESEKLDLKSAIAEHQRLQTEIFPNFRVGLL 629

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HGRM+  +K++ + +F  G   +L+ATTV+EVG+DV +A++++IE+AE FGL+QLHQLRG
Sbjct: 630 HGRMASSEKDATIQAFAQGELDILVATTVVEVGVDVPNATVMLIEHAERFGLSQLHQLRG 689

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           RVGRG + S C+LL +   +  +  RL+VL  ++DGF IAE DL+ R  GE+LG +QSG+
Sbjct: 690 RVGRGAQQSYCLLLLNSARNDAAKQRLNVLAQSQDGFFIAEMDLRLRGPGEVLGTRQSGL 749

Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           P F +A        LE AR  A  ++ QDP+L
Sbjct: 750 PDFALASLVEDQDCLEAARSAASELIAQDPEL 781


>gi|71905998|ref|YP_283585.1| ATP-dependent DNA helicase RecG [Dechloromonas aromatica RCB]
 gi|71845619|gb|AAZ45115.1| ATP-dependent DNA helicase RecG [Dechloromonas aromatica RCB]
          Length = 683

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/602 (37%), Positives = 358/602 (59%), Gaps = 14/602 (2%)

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           + Q +  Q + RR   +   D +GEITL FF       +    EG ++   G+++     
Sbjct: 66  VVQSNEVQFRPRRQMIVRAADDSGEITLRFFSFYPSQ-QAALSEGSRLRAFGEVRGGFFG 124

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ 195
             MVHP +      +     +  +Y    GL+    +K+I +AL+ +  L + + + L Q
Sbjct: 125 AEMVHPRFRKVGGDEALPTEMTPIYPSTAGLANSALQKLIGKALA-VGDLSDTLPETLRQ 183

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIALLLMRKQF--KK 249
           +   P +A + N +H P    D +       PA  R+ +DE+LA Q++L   R+ +  ++
Sbjct: 184 RLKLPGLARSLNFLHRPPPGTDLDTLHARNHPAWRRVKFDEVLAQQLSL---RRAYLARR 240

Query: 250 EIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E G P+ V +  +  ++L  +PF  T +Q  A+ +I  D++Q   M R+LQGDVG+GKT+
Sbjct: 241 EQGAPVLVAQDDLGARLLDQLPFGLTGAQLRAMAEIADDLAQPYPMQRLLQGDVGAGKTI 300

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA +A   A+ AG QA  MAP  ILA+QHY  +K + +   + V  ++G++    +R+ L
Sbjct: 301 VAALAACQAISAGWQAAFMAPTEILAEQHYLKLKDWLEPLGVKVAWLSGSLKTKAKREQL 360

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              A  +A +++GTHAL QD + + +L L IVDEQHRFGV QRL L +K   PH L+M+A
Sbjct: 361 AATA-AEAQLVVGTHALIQDGVDFARLGLAIVDEQHRFGVAQRLALRKKGNNPHQLMMSA 419

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL ++   D+D++ + E P GR PIKT ++  NR ++V+  +K  + EG++AYW+
Sbjct: 420 TPIPRTLAMSYYADLDVTVLDELPPGRTPIKTRLVADNRREDVVGFVKKSVEEGRQAYWV 479

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           CP IEE +    ++  + +  L        I ++HGR+   +K++VM +F  G   +L+A
Sbjct: 480 CPLIEESEALQLQTAQDTYEQLSIDLPELVIGLVHGRLKADEKQAVMAAFAAGDIDVLVA 539

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG+  SSC+L+Y  PL + +  R
Sbjct: 540 TTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGKYESSCVLIYAGPLGEIARQR 599

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L ++    DGF IA +DL+ R  GE +G +QSG+P    A  E+   L+E+AR  A+ +L
Sbjct: 600 LKIIFENTDGFEIARQDLQIRGPGEFVGARQSGVPLLRYADLEMDADLVEMARDVAEEML 659

Query: 668 TQ 669
           T+
Sbjct: 660 TE 661


>gi|158338329|ref|YP_001519506.1| ATP-dependent DNA helicase RecG [Acaryochloris marina MBIC11017]
 gi|158308570|gb|ABW30187.1| ATP-dependent DNA helicase RecG [Acaryochloris marina MBIC11017]
          Length = 818

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 235/682 (34%), Positives = 400/682 (58%), Gaps = 31/682 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+ +  G+G K +  L K+            DLLFY+P   ID   +  I ++ E   VT
Sbjct: 124 PILSLSGIGPKSAQKLEKL------GLFSVRDLLFYYPRDHIDYARQVSIRDLEEGATVT 177

Query: 72  ITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKT--------EMLKNVFFE 119
           +   + + + F    R P    +++++ D TG++ L  FY           E  K ++  
Sbjct: 178 LVATVRRVNCFS-SPRNPKLTIFELVVKDATGQLKLSRFYAGNRFRSRGWQEQQKRLYPP 236

Query: 120 GRKITVTGKIKKLKNRIIMVHP--HYIFHNSQDVNFPLIEAV---YSLPTGLSVDLFKKI 174
           G  +  +G +K  K  I + +P    + H+   +   +I  V   Y+L  G++ DL ++ 
Sbjct: 237 GAVVAASGLVKSSKYGITLDNPDLEVLNHSGDKIESMVIGRVVPIYALTEGVTPDLVRRA 296

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           +V AL     L + + + L Q+ +   +  A   +H P    D +    AR RL +DE  
Sbjct: 297 VVAALPAAKSLRDPLPEGLRQQNNLTDLPSAIADVHFP---PDSDALDRARHRLIFDEFF 353

Query: 235 AGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q+ +L+ R+Q ++    +P++V G++ ++    +PF+ T +Q+  ++DIL D+     
Sbjct: 354 YLQLGMLVRRQQQRQTQESVPLSVHGELLERFYEVLPFTLTGAQKRVVQDILADLQSTQP 413

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++QGDVGSGKT+VA+IA+ +A+++G Q  +MAP  +LA+QHY  + ++     + V+
Sbjct: 414 MNRLVQGDVGSGKTVVAVIALLSAIQSGYQTALMAPTEVLAEQHYHKLVEWFNQLHLPVD 473

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+   A RR+  E++  G+  +++GTHAL QD++++ +L L ++DEQHRFGVQQR  
Sbjct: 474 LLTGSTKAAKRRQIAEQLKTGELPLLVGTHALIQDNVEFDRLGLAVIDEQHRFGVQQRAL 533

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L QK   PHVL MTATPIPRTL LT  GD+D+S+I E P GR+ I+T ++         +
Sbjct: 534 LQQKGQHPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQAIQTTMLTTRDRAHAYD 593

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKE 531
            ++  +++G++ Y + P +EE ++ + RS V+  + L      +  + ++HGR++  +KE
Sbjct: 594 LMRREIAQGRQIYIVLPLVEESEKLDLRSAVQEHDRLQTTIFPNFQVGLLHGRLTSAEKE 653

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            V+  F+  T  +L++TTV+EVG+D+ +A++++IE+A+ FGL+QLHQLRGRVGRG   S 
Sbjct: 654 EVISQFREHTLHILVSTTVVEVGVDIPNATVMLIEHADRFGLSQLHQLRGRVGRGAHQSY 713

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C+L+ +   ++ +  RL+VL+ ++DGF IAE DL+ R  GE+LG +QSG+P   +A    
Sbjct: 714 CLLM-NSSKTETARQRLAVLEQSQDGFFIAEMDLRFRGPGEVLGTRQSGLPDLALASLVD 772

Query: 652 HDSLLEIARKDAKHILTQDPDL 673
               LE+AR+ A+ +L +D  L
Sbjct: 773 DQETLELARQAAEKVLEKDSTL 794


>gi|295095240|emb|CBK84330.1| ATP-dependent DNA helicase RecG [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 693

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/677 (37%), Positives = 380/677 (56%), Gaps = 28/677 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR    KI ++      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTQLYKIGDLLPAIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DGTG +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPVLP- 186
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L     
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSSPELQETLTPVYPTTEGIKQATLRKLTDQALELLDTCAI 179

Query: 187 -EWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 NELLPPELAQ--GMMSLPEALRTLHRPPPTLQLVDLESGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++   ++  K+L ++PF PT +Q     +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSQRDELKDKLLASLPFKPTGAQARVTAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGLQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477

Query: 478 VLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             + EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACTHEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKAPLSKTAQMRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDPD 672
           +   ++ A+HI  + P+
Sbjct: 658 IPEVQRLARHIHERYPE 674


>gi|188492293|ref|ZP_02999563.1| ATP-dependent DNA helicase RecG [Escherichia coli 53638]
 gi|188487492|gb|EDU62595.1| ATP-dependent DNA helicase RecG [Escherichia coli 53638]
          Length = 693

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +D++    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDLALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ + +  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVLFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|304411703|ref|ZP_07393315.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS183]
 gi|307306245|ref|ZP_07585990.1| ATP-dependent DNA helicase RecG [Shewanella baltica BA175]
 gi|304349891|gb|EFM14297.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS183]
 gi|306911118|gb|EFN41545.1| ATP-dependent DNA helicase RecG [Shewanella baltica BA175]
          Length = 691

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 250/680 (36%), Positives = 387/680 (56%), Gaps = 30/680 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +     
Sbjct: 6   LVPITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGSY 59

Query: 70  VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            TI   I    S Q+ + R   ++ N  D TG ++L FF       +N    G  I   G
Sbjct: 60  GTIEAEIQ---STQIIQGRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYG 115

Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           ++++  ++  +VHP Y + +  +DV+    +  +Y    GL    + K+  +AL    +L
Sbjct: 116 EVRRGGHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALV---LL 172

Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQI 238
            +    +LL  +  P   S+ +A   +H P       D E    PA++RL  +ELLA  +
Sbjct: 173 EDGGLTELLPPQLQPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNL 232

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           ++L +R++   +  + +   G++    L  +PF PT +Q+  + DI +D+ + + M+R++
Sbjct: 233 SMLRLRQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLV 292

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G 
Sbjct: 293 QGDVGSGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGK 352

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +K 
Sbjct: 353 LKGKARAQSLADIESGAAQMVIGTHAIFQQHVVFNKLALIIIDEQHRFGVHQRLGLREKG 412

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R +EV+ER
Sbjct: 413 VSQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLER 472

Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           ++  V+++ ++AYW+C  IEE +    ++  +    L       +I ++HGR+   +K+ 
Sbjct: 473 VRNAVITDKRQAYWVCTLIEESEVLECQAAEDTAEELRLALPELNIGLVHGRLKSAEKQQ 532

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M  FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C
Sbjct: 533 IMADFKAGIIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHC 592

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY  PLS  +  RLSVL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA     
Sbjct: 593 VLLYKAPLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 652

Query: 653 DSLLEIARKDAKHILTQDPD 672
            +L+   +K A H++ Q P+
Sbjct: 653 QALIPHIQKLANHVMAQAPE 672


>gi|210622470|ref|ZP_03293175.1| hypothetical protein CLOHIR_01123 [Clostridium hiranonis DSM 13275]
 gi|210154183|gb|EEA85189.1| hypothetical protein CLOHIR_01123 [Clostridium hiranonis DSM 13275]
          Length = 691

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 244/643 (37%), Positives = 379/643 (58%), Gaps = 14/643 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEI 101
           DLL+Y P  F DR    KI+++ +E  VT+   I+   S+  +K     +I + D TG  
Sbjct: 36  DLLYYFPRQFEDRSVIKKIAQLEDEEKVTVKALITNIESYTPKKGMTITRIDVKDDTGFA 95

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            L FF R  E +KN F  G  I   GK+KK    + +      + ++   N   +  VY 
Sbjct: 96  KLTFFNR--EYIKNTFRVGDSILAFGKVKKNGRFVELNSCELEYLSTSPKNIGKLVPVYP 153

Query: 162 LPTGLS-VDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
           L  G++  D+   + +   ++   +PE++ + LL+K     I  A   IH P   KD E 
Sbjct: 154 LSYGITNKDIMNTVRMVFENKDIKIPEYMPEYLLKKYRLCGIDYAIKNIHFP---KDKES 210

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
              A  RL ++ELL  Q+ L + +     E GI    + ++ + +L ++PFS T++Q  A
Sbjct: 211 LKVALYRLIFEELLVLQLGLFMYKGGNSNEKGILFKRDQRLDE-VLESLPFSLTRAQNRA 269

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           + +I+ DM  +  M R++QGDVGSGKT+VAL+A+A  V  G Q  +MAP  ILAQQHYE 
Sbjct: 270 LNEIIDDMCSEKVMNRLVQGDVGSGKTVVALLALAECVFNGYQGALMAPTEILAQQHYES 329

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
             +  ++  I VE++TG++ +  +   L R   G+  I+IGTHAL +D++++  + LVI 
Sbjct: 330 FTETFEDIGINVELLTGSVTKKQKEGILHRARDGEIDILIGTHALIEDNVEFKNIGLVIT 389

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQHRFGV+QR KL+ K T+P +L+MTATPIPRTL L   GD+DIS I E P GR+PI+T
Sbjct: 390 DEQHRFGVRQRGKLSSKGTSPDILVMTATPIPRTLALILYGDLDISIIDELPPGRQPIET 449

Query: 461 VIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517
           + +   + D+V   L +  + +G++ Y +CP +EE +  +  S  E    +   F     
Sbjct: 450 IAVEKKKRDKVYNSLVRREVDKGRQVYIVCPLVEESESLDITSATETAEEIKRDFFPDLR 509

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + ++HG+M   +K+++M +FKN    +L++TTVIEVG++V +++++IIENAE FGLAQLH
Sbjct: 510 VGLLHGKMKPSEKDAIMTAFKNHELDILVSTTVIEVGVNVPNSTLMIIENAERFGLAQLH 569

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG+  S C+L+Y    S+    R+ +++ T DGF I+E+DL+ R  GE  G  
Sbjct: 570 QLRGRVGRGKHQSYCVLIYGSN-SEVCRKRMGIMEETNDGFKISEKDLEIRGPGEFFGTM 628

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP--DLTSVRG 678
           Q G+P+  +A    H  +L+  +++A+ I+ +D   D    RG
Sbjct: 629 QHGVPELKVANLFKHMKILKTVQQEARIIIGEDSTLDFKEYRG 671


>gi|157163133|ref|YP_001460451.1| ATP-dependent DNA helicase RecG [Escherichia coli HS]
 gi|170018118|ref|YP_001723072.1| ATP-dependent DNA helicase RecG [Escherichia coli ATCC 8739]
 gi|157068813|gb|ABV08068.1| ATP-dependent DNA helicase RecG [Escherichia coli HS]
 gi|169753046|gb|ACA75745.1| ATP-dependent DNA helicase RecG [Escherichia coli ATCC 8739]
 gi|323939588|gb|EGB35794.1| ATP-dependent DNA helicase RecG [Escherichia coli E482]
          Length = 693

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/676 (37%), Positives = 380/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +D++    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDLALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ + +  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVLFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|237747216|ref|ZP_04577696.1| ATP-dependent DNA helicase recG [Oxalobacter formigenes HOxBLS]
 gi|229378567|gb|EEO28658.1| ATP-dependent DNA helicase recG [Oxalobacter formigenes HOxBLS]
          Length = 687

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 254/677 (37%), Positives = 392/677 (57%), Gaps = 29/677 (4%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI- 69
            PLS     G  +   ++K+   G   +   ++   + PS + D      I+E    RI 
Sbjct: 3   GPLS-----GSCFQTIMNKLERLGIRTD---METALHLPSRYEDETKLTNIAEALFRRIG 54

Query: 70  -VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              + G ++  S  Q   RR   + ++DGT ++ L F +     +K +   G++I V G+
Sbjct: 55  HAQVEGVVTA-SEIQYHPRRQLVVFVSDGTSQLVLRFLHFYGSQVKQLAV-GKRIRVRGE 112

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           +++  N + M+HP Y      D + PL   +  VY    G+S +  +K I   L RL  L
Sbjct: 113 LRQGYNGVEMIHPAY---RIVDESTPLPVALTPVYPTCDGISQNYLRKEIGAVLKRLD-L 168

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALL 241
            + + + LL +   P  ++A   +HNP    D     + + PA +R+ +DELLA Q+++ 
Sbjct: 169 SDTLPEALLAELELPLFSDAIRFLHNPPAGVDENALLDRSHPAWKRMKFDELLAQQLSMR 228

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
             +   +++   P+   G++ ++ +R++PF+ T +Q+  + +I +DM +   M R+LQGD
Sbjct: 229 RAQIARRRQKSHPLEKTGELTERFVRSLPFALTHAQQEVLAEIREDMGRAFPMQRLLQGD 288

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA IA   A++ G QA +MAP  ILA+QH+E +  + +   + V  I+G+M +
Sbjct: 289 VGSGKTVVAAIAALLAIDNGFQAAMMAPTEILAEQHFERLSSWMKPLGLSVIGISGSMKK 348

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK---- 417
             +  AL  I  GQA  +IGTHAL QD++++  L LVIVDEQHRFGV QRL L  K    
Sbjct: 349 KEKDAALSMIQTGQAQFVIGTHALIQDAVRFANLGLVIVDEQHRFGVGQRLVLRNKGDLH 408

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
           +  PH L+M+ATPIPRTL +T   D+D+S I   P GRKP+ T +I   R DEVI R+  
Sbjct: 409 SAIPHQLMMSATPIPRTLAMTFYADLDVSVIAGLPPGRKPVVTRLIDQERRDEVIARIHA 468

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
              +G++ YW+CP IEE +    ++ V+    L +     S+ ++HGRM  ++K+ VM  
Sbjct: 469 ATLDGRQVYWVCPLIEESESLQLQTAVDTHAVLADALKGLSVGLVHGRMKPVEKQRVMSD 528

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G  ++L+ATTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG+  S C+L+Y
Sbjct: 529 FVDGRIQVLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGDVDSVCLLMY 588

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PL + +  RL  ++ T DGF+IA+ DL+ R  GE LG +QSG      A  E    L+
Sbjct: 589 QKPLGETARQRLRTMRETNDGFIIAQRDLEIRGPGEFLGSRQSGQAMLRFADLEKDGELI 648

Query: 657 EIARKDAKHILTQD-PD 672
           E A   A+ +LT+  PD
Sbjct: 649 EKAASLAEALLTKRFPD 665


>gi|269468391|gb|EEZ80056.1| recG-like helicase [uncultured SUP05 cluster bacterium]
          Length = 688

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 243/641 (37%), Positives = 371/641 (57%), Gaps = 17/641 (2%)

Query: 44  LLFYHPSSFIDRHYRPKI--SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           LLF+ P  + ++    K+  +++ +E +V +T   ++       ++R     L+D     
Sbjct: 33  LLFHLPHRYQNKTKITKLNQAQVGDEILVELTIDRTEEVP---TRQRQLLCYLSDNDNRT 89

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAV 159
            LL F+   +  K     G  I   G++K  ++ + M HP Y   +    N     +  +
Sbjct: 90  LLLRFFHFNQYQKQNLTRGETIQCFGEMKIGRDGLEMHHPEYRLISKGQTNLLEKTLSPI 149

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR------ 213
           Y L   +     KK I  AL  L         + L K S P++ +A N +H+P+      
Sbjct: 150 YPLTANIHQAQLKKWIDIALETLQKSDLIDNFENLSKNSMPTLKQALNTLHHPQINENID 209

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           +  DF+  S  ++RL  +EL A Q++LL ++ + K +I     ++ +++ ++L ++ F  
Sbjct: 210 QIADFKHIS--QQRLIIEELCAHQLSLLKLKNERKHKISNIFELKTQLSDQLLNDLGFKL 267

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q  +I +I  D+S  + MLR+LQGDVGSGKT+VA+ A   AVE   QA IMAP  IL
Sbjct: 268 TNAQRRSIDEINTDISSPHPMLRLLQGDVGSGKTIVAVFACLQAVENSFQAAIMAPTEIL 327

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A QH +    Y     I V  +TG+   + R + L +I  GQA +IIGTHALFQ+++ + 
Sbjct: 328 AAQHLQGFSNYLAPLGIDVAFLTGSQNTSQRAEQLNKIKSGQAQVIIGTHALFQEAVTFN 387

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           KL LV++DEQH+FGV QRL L QKA   PH L+MTATPIPR+L +++  D+D S I E P
Sbjct: 388 KLGLVVIDEQHKFGVHQRLSLAQKAHNTPHQLVMTATPIPRSLTMSAYADLDSSIIDELP 447

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            GRKP+KT+ I  +R +EVI+++K V ++  + YW+C  IEE +     S +   + L E
Sbjct: 448 PGRKPVKTIAISADRKNEVIKKIKQVCNDNNQVYWVCTLIEESEVLRAESAINTHHYLQE 507

Query: 513 HFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +  + S+ +IHG+M+  +K  +M  F      +L+ATTVIEVG++V +AS+++IEN+E  
Sbjct: 508 NLPNLSVVLIHGKMNKDEKSEIMRQFSANKIDVLVATTVIEVGVNVPNASLMVIENSERL 567

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GLAQLHQLRGRVGRG + S CIL+Y  PLS N+  RL +L+ T DGF IA++DL+ R  G
Sbjct: 568 GLAQLHQLRGRVGRGADASICILMYQTPLSANATERLDILRQTNDGFAIAQKDLELRGPG 627

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           EILG +Q+G+    IA       L+   R  ++H L  D +
Sbjct: 628 EILGTQQTGIADMKIANIVRDGYLMNQVRYYSEHFLQLDEN 668


>gi|238019125|ref|ZP_04599551.1| hypothetical protein VEIDISOL_00987 [Veillonella dispar ATCC 17748]
 gi|237863824|gb|EEP65114.1| hypothetical protein VEIDISOL_00987 [Veillonella dispar ATCC 17748]
          Length = 680

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 246/669 (36%), Positives = 385/669 (57%), Gaps = 33/669 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+T +G+G      L K+   G  N T    LL Y P S+ DR    +I E+       +
Sbjct: 5   LTTIKGIGPGREKQLHKL---GITNVT---SLLTYFPRSYEDRRTIYRIGELKSGMTGGV 58

Query: 73  TGYISQHSSFQLQKRRP------YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            G +       +Q++RP       ++++ DGTG + ++ F +  +  KN + +G+++   
Sbjct: 59  MGNV-----IAVQEKRPRPRLSILEVVIADGTGPLKIVLFNQGYK--KNFYKKGQRLYAY 111

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           GK +     + M  P     N  D   P   I  +Y+L  G+S  + +  +    +    
Sbjct: 112 GKAEFQYGAMQMNTPQ--IENLGDGGEPDRGIVPIYALADGVSQFVVRSSVRNWFAANHE 169

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E +  ++ +   + S  +AF ++H P  ++ +E    AR +LAY+EL   Q  L L+R
Sbjct: 170 LQEILPAEVREAHQYMSRYDAFKMMHFPASSERYE---EARHQLAYEELFVMQSGLALLR 226

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            + +   G  +   G +  + + N+PFS T  Q+ A++DI  DM  +  M R+LQGDVGS
Sbjct: 227 NKEQCHKGSKMGPNGDLMAQCIENLPFSLTGDQQRALEDIRIDMEDERPMQRLLQGDVGS 286

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA +++  A+E G Q  +MAP  ILA QHYE I +  +N  I +E++TG+  +  +
Sbjct: 287 GKTVVATLSLLKAIENGYQGALMAPTEILAAQHYEGITEVCRNLGITIELLTGSTTKKEK 346

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
            +  E +A G  ++IIGTHAL Q+ + ++ L LVI+DEQHRFGV+QR +L QK T PHVL
Sbjct: 347 ERIYEGLADGSINMIIGTHALIQEGVNFHNLGLVIIDEQHRFGVEQRARLQQKGTYPHVL 406

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRT+ L+  GD+ +S I E P GRKP+KT  +  +  + +       ++EG++
Sbjct: 407 IMTATPIPRTMTLSVYGDLAVSLIKEMPPGRKPVKTYAVDSSYKERLRNFFGKEMAEGRQ 466

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP +EE ++ + ++  E +  L E+F  +  + ++HGRM   +K+ VM++F  G  
Sbjct: 467 VYVVCPLVEESEKLDLQAAEELYLELKEYFYKAYEVGLVHGRMKPSEKDEVMNAFHKGDI 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL++TTVIEVG++V +A+I+ IE AE FGL+QLHQLRGRVGRG   S CIL+     SK
Sbjct: 527 SLLVSTTVIEVGVNVPNATIMCIEGAERFGLSQLHQLRGRVGRGSHQSYCILVSD---SK 583

Query: 603 N--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           N  S  RL +++ T+DGF +AE+DL  R  G++ G+ QSG+P   +A       +L  AR
Sbjct: 584 NDVSQERLKLMEQTQDGFELAEQDLLLRGSGQLFGLAQSGLPDLRVANIIKDIEILVQAR 643

Query: 661 KDAKHILTQ 669
           KD     +Q
Sbjct: 644 KDVLDFASQ 652


>gi|289668008|ref|ZP_06489083.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 717

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 258/708 (36%), Positives = 389/708 (54%), Gaps = 52/708 (7%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           PS      APLS+  GVG K +  F ++ I           DL  + P  + DR     I
Sbjct: 9   PSLAVAGQAPLSSLPGVGPKVADKFAARGI-------LSVQDLWLHLPLRYEDRTRLTTI 61

Query: 62  SEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118
           +++       I G +      F+    RP  ++ ++D + G + L FF+ +   +   F 
Sbjct: 62  AQLQSGVPAQIEGRVDAVERGFRF---RPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FA 117

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176
            G ++ V G  K  +N   +VHP Y +    +D      ++ VY +  G+     +K+I 
Sbjct: 118 VGTRVRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177

Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225
           +AL RLP       + P W     LQ +  PS+  A   +H P    D         PA+
Sbjct: 178 QALERLPPEAALELLPPHW-----LQDEQLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQ 232

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +RLA +ELLA Q++L   R   ++     +   G + Q++ + +PF  T +Q+   + I 
Sbjct: 233 QRLAIEELLAHQLSLRRQRIALQRFHAPTLPGNGTLVQQLRKALPFQLTGAQQRVFEQIA 292

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
           +D++Q + MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + 
Sbjct: 293 RDLAQPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRGWL 352

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +   I +  + G +    R  A+  +A GQA +++GTHAL Q+++ ++ L L I+DEQHR
Sbjct: 353 EPLGIRIVWLAGKVTGKARAAAMADVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHR 412

Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           FGV QRL L  K  A    PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+
Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTI 472

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------------FRSVVERF 507
           ++   R  E++ER++V  +EG++AYW+C  IEE +E                 ++    F
Sbjct: 473 VLSAERRPELVERIRVACAEGRQAYWVCTLIEESEEPEKGAHGQHSGPPRIEAQAAEVTF 532

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +L        +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIE
Sbjct: 533 EALSAQLPGVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIE 592

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           NAE  GLAQLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+
Sbjct: 593 NAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLE 652

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            R  GE+LG +Q+G+  F IA       LL   +  A+ +L + PD+ 
Sbjct: 653 LRGPGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLAEAPDIA 700


>gi|83719281|ref|YP_441827.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis E264]
 gi|83653106|gb|ABC37169.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis E264]
          Length = 859

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 249/662 (37%), Positives = 372/662 (56%), Gaps = 29/662 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 186 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 245

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP        D + PL +A
Sbjct: 246 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPSV---RVVDEDAPLPQA 301

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  + +  LQ    PS+A+A  I+H+P
Sbjct: 302 LTPVYPSTAGVSQAYLRKAIDNALTRTPLPELLPPEVARAYLQPLDVPSLADAVRILHHP 361

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263
               D     + T PA  R+ +DELLA Q++L    ++ +      +    +     ++ 
Sbjct: 362 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGASLSA 421

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 422 RLYAALPFTLTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 481

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTH
Sbjct: 482 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKDKRAALEAAALGTARLVIGTH 541

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRT
Sbjct: 542 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 601

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE
Sbjct: 602 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 661

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 662 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 721

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ 
Sbjct: 722 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 781

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A H++   PD+
Sbjct: 782 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAAHLIAGHPDV 841

Query: 674 TS 675
            +
Sbjct: 842 VA 843


>gi|323143100|ref|ZP_08077802.1| ATP-dependent DNA helicase RecG [Succinatimonas hippei YIT 12066]
 gi|322417125|gb|EFY07757.1| ATP-dependent DNA helicase RecG [Succinatimonas hippei YIT 12066]
          Length = 710

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 250/673 (37%), Positives = 375/673 (55%), Gaps = 30/673 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVT 71
           +S  +GVG K S  L+++            DL+F+ P  + DR Y  K+S+++ +   V 
Sbjct: 13  VSNLKGVGPKISSSLNRL------KIFSLFDLIFHFPFRYQDRTYISKVSDLTTDSGSVL 66

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           +   +     F   + +  KIL  D TG I   FF      + N F  GR++   G IK 
Sbjct: 67  LCLKVKAVEGFVGSRGKVLKILFADDTGIIEASFFNTYATFVHN-FTSGRRVLAYGSIKP 125

Query: 132 --LKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVL 185
             +  R  +VHP   F   N        +  +YS   GL   + +K I  AL  +    L
Sbjct: 126 DYMTGRPSLVHPEITFLQTNETVTTEEFLTPIYSSTEGLGQAILRKTIKTALDLIQKAPL 185

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR----ERLAYDELLAGQIALL 241
           PE + K+L       S+++A   +H P    D     P +    ER+ Y+EL+A Q+ LL
Sbjct: 186 PEILPKNL--NPYGMSLSDAIKGVHYPHPQSDHTPIVPQKLTSFERICYEELIAYQLCLL 243

Query: 242 LMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L++      +  + +  + K++   L ++PF PT +Q     +IL+D+++   M R++ G
Sbjct: 244 LLKVSNSSHKAALSVAFDSKLSDDFLHSLPFKPTLAQLKVFNEILEDLNKDIPMARLVHG 303

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA+++    ++AGGQ V+++P  ILA+QH+       +   +   ++T +  
Sbjct: 304 DVGSGKTLVAIMSALQVIKAGGQCVLLSPTDILARQHFAKCSSLLKEFNVNCLLLTASER 363

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418
           ++ R   L+ I+ G A  IIGTHA+FQD + Y  L LVI+DEQHRFG++QR+ L  KA  
Sbjct: 364 KSDRLNLLKAISDGSAQFIIGTHAVFQDDVIYKHLALVIIDEQHRFGIEQRIALLNKAPQ 423

Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            T+ H L+MTATPIPRTL L    D+++S I E P GR P+ T +I ++R D+VI RL  
Sbjct: 424 GTSAHQLVMTATPIPRTLQLALYSDLEVSTIDELPPGRCPVITALIQMSRKDDVIARLNA 483

Query: 478 VLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           V S G +AYW+CP IEE +  +    +S+ E  +    H    I ++HG+M+   K  VM
Sbjct: 484 VCSRGTQAYWVCPHIEEGENDDVASAKSIYEEISHKLPHL--KIGLLHGQMNAKQKNMVM 541

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F  G   +L ATT+IEVG+DV +A+I+II NAE  GLAQLHQLRGRVGRG   S C+L
Sbjct: 542 EDFAAGKISILAATTIIEVGVDVPNATIMIINNAERLGLAQLHQLRGRVGRGSAQSYCLL 601

Query: 595 LYHP-PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L++  P ++ +  RL +++ + DGF IA EDL  R  GEI+G KQ+G   F +A      
Sbjct: 602 LHNADPENQIAQKRLQIMRTSNDGFKIATEDLALRGPGEIIGTKQAGFDTFKVADVTRDH 661

Query: 654 SLLEIARKDAKHI 666
            L+E AR  A ++
Sbjct: 662 RLIESARNSALYL 674


>gi|257137995|ref|ZP_05586257.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis E264]
          Length = 857

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 249/662 (37%), Positives = 372/662 (56%), Gaps = 29/662 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 184 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 243

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP        D + PL +A
Sbjct: 244 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPSV---RVVDEDAPLPQA 299

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  + +  LQ    PS+A+A  I+H+P
Sbjct: 300 LTPVYPSTAGVSQAYLRKAIDNALTRTPLPELLPPEVARAYLQPLDVPSLADAVRILHHP 359

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263
               D     + T PA  R+ +DELLA Q++L    ++ +      +    +     ++ 
Sbjct: 360 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGASLSA 419

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 420 RLYAALPFTLTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 479

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTH
Sbjct: 480 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKDKRAALEAAALGTARLVIGTH 539

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRT
Sbjct: 540 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 599

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE
Sbjct: 600 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 659

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 660 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 719

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ 
Sbjct: 720 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 779

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A H++   PD+
Sbjct: 780 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAAHLIAGHPDV 839

Query: 674 TS 675
            +
Sbjct: 840 VA 841


>gi|126172599|ref|YP_001048748.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS155]
 gi|125995804|gb|ABN59879.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS155]
          Length = 696

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 250/680 (36%), Positives = 387/680 (56%), Gaps = 30/680 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +     
Sbjct: 11  LVPITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGSY 64

Query: 70  VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            TI   I    S Q+ + R   ++ N  D TG ++L FF       +N    G  I   G
Sbjct: 65  GTIEAEIQ---STQIIQGRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYG 120

Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           ++++  ++  +VHP Y + +  +DV+    +  +Y    GL    + K+  +AL    +L
Sbjct: 121 EVRRGGHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALV---LL 177

Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQI 238
            +    +LL  +  P   S+ +A   +H P       D E    PA++RL  +ELLA  +
Sbjct: 178 EDGGLTELLPPQLQPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNL 237

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           ++L +R++   +  + +   G++    L  +PF PT +Q+  + DI +D+ + + M+R++
Sbjct: 238 SMLRLRQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLV 297

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G 
Sbjct: 298 QGDVGSGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGK 357

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +K 
Sbjct: 358 LKGKVRAQSLADIESGAAQMVIGTHAIFQQHVVFSKLALIIIDEQHRFGVHQRLGLREKG 417

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R +EV+ER
Sbjct: 418 VSQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLER 477

Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           ++  V+++ ++AYW+C  IEE +    ++  +    L       +I ++HGR+   +K+ 
Sbjct: 478 VRNAVITDKRQAYWVCTLIEESEVLECQAAEDTAEELRLALPELNIGLVHGRLKSAEKQQ 537

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M  FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C
Sbjct: 538 IMADFKAGIIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHC 597

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY  PLS  +  RLSVL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA     
Sbjct: 598 VLLYKAPLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 657

Query: 653 DSLLEIARKDAKHILTQDPD 672
            +L+   +K A H++ Q P+
Sbjct: 658 QALIPHIQKLANHVMAQAPE 677


>gi|160873476|ref|YP_001552792.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS195]
 gi|160858998|gb|ABX47532.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS195]
          Length = 696

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 250/680 (36%), Positives = 387/680 (56%), Gaps = 30/680 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +     
Sbjct: 11  LVPITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGSY 64

Query: 70  VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            TI   I    S Q+ + R   ++ N  D TG ++L FF       +N    G  I   G
Sbjct: 65  GTIEAEIQ---STQIIQGRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYG 120

Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           ++++  ++  +VHP Y + +  +DV+    +  +Y    GL    + K+  +AL    +L
Sbjct: 121 EVRRGGHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALV---LL 177

Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQI 238
            +    +LL  +  P   S+ +A   +H P       D E    PA++RL  +ELLA  +
Sbjct: 178 EDGGLTELLPPQLQPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNL 237

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           ++L +R++   +  + +   G++    L  +PF PT +Q+  + DI +D+ + + M+R++
Sbjct: 238 SMLRLRQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLV 297

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G 
Sbjct: 298 QGDVGSGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGK 357

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +K 
Sbjct: 358 LKGKARAQSLADIESGAAQMVIGTHAIFQQHVVFNKLGLIIIDEQHRFGVHQRLGLREKG 417

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R +EV+ER
Sbjct: 418 VSQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLER 477

Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           ++  V+++ ++AYW+C  IEE +    ++  +    L       +I ++HGR+   +K+ 
Sbjct: 478 VRNAVITDKRQAYWVCTLIEESEVLECQAAEDTAEELRLALPELNIGLVHGRLKSAEKQQ 537

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M  FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C
Sbjct: 538 IMADFKAGIIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHC 597

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY  PLS  +  RLSVL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA     
Sbjct: 598 VLLYKAPLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 657

Query: 653 DSLLEIARKDAKHILTQDPD 672
            +L+   +K A H++ Q P+
Sbjct: 658 QALIPHIQKLANHVMAQAPE 677


>gi|124002554|ref|ZP_01687407.1| ATP-dependent DNA helicase RecG [Microscilla marina ATCC 23134]
 gi|123992383|gb|EAY31751.1| ATP-dependent DNA helicase RecG [Microscilla marina ATCC 23134]
          Length = 698

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/666 (38%), Positives = 389/666 (58%), Gaps = 26/666 (3%)

Query: 41  FIDLLFYHPSSFIDRHYRPKISEISEERI-VTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           + DL+ Y+P    DR    +I+E++E    V ++G I +        ++       DGTG
Sbjct: 32  YSDLILYYPFKHEDRTKVHRIAELNEGMTAVQLSGRIIRTQVIGEGHKKRLVAYFGDGTG 91

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
           E+ L++F   T M K +      + V GK +   ++  + HP     N  +     ++ V
Sbjct: 92  EVELIWFKGVTWMQKQINANATYL-VFGKPQFFNHKFSIAHPEIELLNPAEQQSGFLQPV 150

Query: 160 YSLPTGLSVD-LFKKIIVEAL-SRLPVLPEWIEKDL----LQKKSFPSIAEAFNIIHNPR 213
           Y++   +    ++ K I + L + LP+  + IE++L    LQ+    +  +A   IH P 
Sbjct: 151 YTVTEKMKRKYVYSKNISKMLRTLLPMAYQHIEENLSEAILQRYRLIARRDAVVNIHFP- 209

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPF 271
             KD +W   A  RL ++EL   Q+ LL  +K  KK+I  G        I     +++PF
Sbjct: 210 --KDQQWLKRATTRLKFEELFYIQLKLLKEQKH-KKKIYQGQTFKDTSLIKDFYEKHLPF 266

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T +Q+   ++I +DM+   +M R+LQGDVGSGKT+VA I+M +A+ +G QA ++AP  
Sbjct: 267 ELTDAQKRVCREIYRDMASGKQMNRLLQGDVGSGKTIVAFISMLSAIGSGAQACMVAPTE 326

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+QHY+ +KK+     I ++I+TG+     RR    R+ +G   I++GTHALF+D +Q
Sbjct: 327 ILAEQHYQGLKKFADKLGITIDILTGSTRTRDRRVLHARLENGNLKILVGTHALFEDKVQ 386

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKI 448
           +  L L IVDEQHRFGV+QR KL ++ +    PH+L+MTATPIPRTL +T  GD+D+S I
Sbjct: 387 FDNLGLCIVDEQHRFGVEQRSKLWKRNSENLYPHILVMTATPIPRTLAMTLYGDLDVSVI 446

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE----GKKAYWICPQIEEKKESNFRSVV 504
            E PAGRKPIKTV    +R D    R+   L E    G++ Y + P IEE +   +++++
Sbjct: 447 DELPAGRKPIKTV----HRYDAQRLRMFGFLREQIALGRQVYIVYPLIEESETLEYKNLM 502

Query: 505 ERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +   S+   F    ++I+HG+MS +DK+  M  FK G  ++++ATTVIEVG+DV +A++I
Sbjct: 503 DGHESIQRAFPDQHLSIVHGQMSSVDKDFEMQRFKKGETQIMVATTVIEVGVDVPNATVI 562

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +IENAE FGL+QLHQLRGRVGRG E S CIL+    +SK   TRL  +  T +GF IA+ 
Sbjct: 563 VIENAERFGLSQLHQLRGRVGRGAEQSYCILMTDYKISKEGRTRLETMVKTNNGFEIADV 622

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           DLK R  G ++G +QSG+    IA       +L+ ARK A+ I+ +DP+L S+    ++ 
Sbjct: 623 DLKLRGPGNMMGTQQSGLMNLQIADLAKDGKILQEARKMAQEIIEEDPELESLENSKMKE 682

Query: 684 LLYLYQ 689
            + L Q
Sbjct: 683 FMNLDQ 688


>gi|315265705|gb|ADT92558.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS678]
          Length = 691

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 250/680 (36%), Positives = 387/680 (56%), Gaps = 30/680 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +     
Sbjct: 6   LVPITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGSY 59

Query: 70  VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            TI   I    S Q+ + R   ++ N  D TG ++L FF       +N    G  I   G
Sbjct: 60  GTIEAEIQ---STQIIQGRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYG 115

Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           ++++  ++  +VHP Y + +  +DV+    +  +Y    GL    + K+  +AL    +L
Sbjct: 116 EVRRGGHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALV---LL 172

Query: 186 PEWIEKDLLQKKSFP---SIAEAFNIIHNPRKAK---DFEWTS-PARERLAYDELLAGQI 238
            +    +LL  +  P   S+ +A   +H P       D E    PA++RL  +ELLA  +
Sbjct: 173 EDGGLTELLPPQLQPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNL 232

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           ++L +R++   +  + +   G++    L  +PF PT +Q+  + DI +D+ + + M+R++
Sbjct: 233 SMLRLRQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLV 292

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G 
Sbjct: 293 QGDVGSGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGK 352

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +K 
Sbjct: 353 LKGKARAQSLADIESGAAQMVIGTHAIFQQHVVFNKLGLIIIDEQHRFGVHQRLGLREKG 412

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R +EV+ER
Sbjct: 413 VSQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLER 472

Query: 475 LK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           ++  V+++ ++AYW+C  IEE +    ++  +    L       +I ++HGR+   +K+ 
Sbjct: 473 VRNAVITDKRQAYWVCTLIEESEVLECQAAEDTAEELRLALPELNIGLVHGRLKSAEKQQ 532

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M  FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C
Sbjct: 533 IMADFKAGIIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHC 592

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY  PLS  +  RLSVL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA     
Sbjct: 593 VLLYKAPLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRD 652

Query: 653 DSLLEIARKDAKHILTQDPD 672
            +L+   +K A H++ Q P+
Sbjct: 653 QALIPHIQKLANHVMAQAPE 672


>gi|56415634|ref|YP_152709.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364561|ref|YP_002144198.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129891|gb|AAV79397.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197096038|emb|CAR61625.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 693

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 254/676 (37%), Positives = 379/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    G ++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGLRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     +Y    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPIYPTTEGVKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHAQPLSTNNILKDKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAI 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|148827157|ref|YP_001291910.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae PittGG]
 gi|148718399|gb|ABQ99526.1| ATP-dependent DNA helicase [Haemophilus influenzae PittGG]
          Length = 693

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/677 (37%), Positives = 392/677 (57%), Gaps = 26/677 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L++  GVG   S  L+KI   G  N     DLLF+ P  + DR     I+ +  E+  TI
Sbjct: 11  LTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFTI 64

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G I Q       +R    + L+DGT +I L FF     M +N F  G ++   G++K+ 
Sbjct: 65  EG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKRG 122

Query: 133 KNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           ++   + HP Y  +  N+  V    +  +YS   GL  +  +K+  +AL+   +L +   
Sbjct: 123 RHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQI 179

Query: 191 KDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLM 243
            ++L  +  P   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  +
Sbjct: 180 AEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +   M+R++QGDVG
Sbjct: 240 RLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +    
Sbjct: 300 SGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFKPFGIEVGWLAGKVKGKS 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAGF 419

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++ R+K   
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM   +K+ VM  F
Sbjct: 480 VNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y 
Sbjct: 540 KNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGCTASFCVLMYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +A       ++ 
Sbjct: 600 PPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLT 674
             +  AK ++ + PD+ 
Sbjct: 660 TVQHYAKSLIQKYPDVA 676


>gi|193063827|ref|ZP_03044914.1| ATP-dependent DNA helicase RecG [Escherichia coli E22]
 gi|192930542|gb|EDV83149.1| ATP-dependent DNA helicase RecG [Escherichia coli E22]
          Length = 693

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/676 (37%), Positives = 379/676 (56%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   S  L+KI      N     DLL + P  + DR +   I E+      T
Sbjct: 10  PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
                 M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GNYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     ++ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 EELLPPELSQ--GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L  +PF  T +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQPLSANDTLKNKLLAALPFKQTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRH 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM   +K++VM 
Sbjct: 478 ACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRLARHIHERYP 673


>gi|257059384|ref|YP_003137272.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 8802]
 gi|256589550|gb|ACV00437.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 8802]
          Length = 819

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/653 (36%), Positives = 382/653 (58%), Gaps = 29/653 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99
           DLLFY+P   ID   +  IS ++    VTI G + + + F   K +    +++ L D TG
Sbjct: 150 DLLFYYPRDHIDYARQVSISRLNPGETVTIVGSVKRCNCFTSPKNKNLSIFELFLQDNTG 209

Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH-----YIFH 146
           +I L  F+  T        E  K ++  G  +  +G +K+ +  + + +P       +  
Sbjct: 210 KIKLNRFFAGTRFTNRGWQEKQKKLYPLGAIVAASGLVKQNRFGLTLDNPEIEVLDSLGS 269

Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
           N + +    +  VY L  G+  DL ++ IV  L  +  + + +   L  +     + +A 
Sbjct: 270 NIESLKIGRVLPVYPLTEGVPADLIRRAIVACLGAIKQIRDPLPVGLRNQYGLIPLKDAI 329

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ----FKKEIGIPINVEGKIA 262
             IH P         + AR RL +DE    Q+  L  R++     K  I +P   +GK+ 
Sbjct: 330 ANIHFPETPA---LLTHARRRLVFDEFFYLQLGFLQRRQEQKHLEKSAIFLP---QGKLI 383

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +   + +PF  T +Q+  I +IL+D++    M R++QGDVG+GKT+VA+ ++ AA+++G 
Sbjct: 384 ENFNQLLPFKLTNAQQRVINEILEDLNSSTPMNRLVQGDVGAGKTIVAVFSILAAIQSGY 443

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA +MAP  +LA+QHY  +  +     + VE++TG+   A RR+   ++  G+  +++GT
Sbjct: 444 QAALMAPTEVLAEQHYRKLVTWFNLLHLPVELLTGSTKIAKRREIHSQLETGELPLLVGT 503

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           HAL QD + + +L LV++DEQHRFGVQQR KL  K  +PHVL MTATPIPRTL LT  GD
Sbjct: 504 HALIQDKVNFQRLGLVVIDEQHRFGVQQRAKLLAKGQSPHVLTMTATPIPRTLALTLHGD 563

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +D+S+I E P GR+PI+T  +      +  + ++  +++G++AY I P IEE ++ + R+
Sbjct: 564 LDVSQIDELPPGRQPIQTTALMGKERTQAYDLIRREVAQGRQAYIIFPMIEESEKLDVRA 623

Query: 503 VVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            VE    L E      +I ++HGRMS  +K+ ++ +F++   +++++TTVIEVG+DV +A
Sbjct: 624 AVEEHKKLSETVFPQFNIGLLHGRMSSSEKDEILTNFRDNKSQIIVSTTVIEVGVDVPNA 683

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           ++++IENAE FGL+QLHQLRGRVGRG   S C+L+ +   + +S  RLSVL+ ++DGF I
Sbjct: 684 TVMLIENAERFGLSQLHQLRGRVGRGSHQSYCLLMSNSK-TPDSRQRLSVLEQSQDGFFI 742

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           +E DL+ R  G +LG +QSG+P F +A       +LE+AR  A+ IL  D  L
Sbjct: 743 SEMDLRFRGPGTVLGTRQSGLPDFALASLVEDQEILELARSAAEKILIADSHL 795


>gi|269137385|ref|YP_003294085.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda EIB202]
 gi|267983045|gb|ACY82874.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda EIB202]
 gi|304557486|gb|ADM40150.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda FL6-60]
          Length = 693

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 250/675 (37%), Positives = 381/675 (56%), Gaps = 26/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   +  L+K+            DLL + P  + DR    +I E+    +VT
Sbjct: 10  PLTSLSGVGASQAGKLAKL------GLVTIQDLLLHLPLRYEDRTRLYRIGELQPGMVVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + +     +RR     ++DG+G +TL FF     M KN    G+++   G+IK+
Sbjct: 64  VEGEVLR-TDVAFGRRRMLTSQISDGSGLLTLRFFNFSAAM-KNSLAPGKRVLAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPV--LP 186
             +   ++HP Y      D    L EA   VY    G+     +K+  +AL+ L +  +P
Sbjct: 122 GHHGGEIIHPEYRMQGD-DAAPALQEALTPVYPTTEGVRQATLRKLSDQALALLDITPIP 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLL 242
           E +   L  K+   S+ +A   +H P     +    +   PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPDAL--KQGLLSLPDALRTLHRPPPDIHQEDLAQGRHPAQRRLILEELLAHHLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   + +  +  + Q+ L  +PF+PT +Q   + DI  DM++   M+R++QGDV
Sbjct: 239 VRAGNQRHRALALATDDHLKQRFLAALPFTPTTAQRRVLGDIEADMAKSVPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G GKTLVA +A   A+  G Q  +MAP  +LA+QH    +++     + V  + G     
Sbjct: 299 GCGKTLVAALAALRAIAHGHQVALMAPTELLAEQHAANFRQWFAPLGLSVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  +  IA G+  +++GTHALFQ+ +Q+  L LVI+DEQHRFGV QRL L +K  A  
Sbjct: 359 ARQTQMAAIAAGEVDMVVGTHALFQEQVQFAGLALVIIDEQHRFGVHQRLALWEKGEAQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I   R  ++++R++  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIADTRRQQILDRVRHA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L E ++AYW+C  IEE      ++      +L +      IA++HGRM   DK+ VM  
Sbjct: 479 CLEEKRQAYWVCTLIEESDLLEAQAAEATAETLMQQLPELRIALVHGRMKAADKQRVMTQ 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKAGEVDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLS+ +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +L+
Sbjct: 599 KAPLSQTAQRRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAEFRVADLLRDQALI 658

Query: 657 EIARKDAKHILTQDP 671
              ++ A+H+ +  P
Sbjct: 659 PEVQRIARHLHSAYP 673


>gi|218246338|ref|YP_002371709.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 8801]
 gi|218166816|gb|ACK65553.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 8801]
          Length = 819

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/653 (36%), Positives = 383/653 (58%), Gaps = 29/653 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99
           DLLFY+P   ID   +  IS ++    VTI G + + + F   K +    ++++L D TG
Sbjct: 150 DLLFYYPRDHIDYARQVSISRLNPGETVTIVGSVKRCNCFTSPKNKNLSIFELILQDNTG 209

Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH-----YIFH 146
           +I L  F+  T        E  K ++  G  +  +G +K+ +  + + +P       +  
Sbjct: 210 KIKLNRFFAGTRFTNRGWQEKQKKLYPLGAIVAASGLVKQNRFGLTLDNPEIEVLDSLGS 269

Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
           N + +    +  VY L  G+  DL ++ IV  L  +  + + +   L  +     + +A 
Sbjct: 270 NIESLKIGRVLPVYPLTEGVPADLIRRAIVACLGAIKQIRDPLPVGLRNQYGLIPLKDAI 329

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ----FKKEIGIPINVEGKIA 262
             IH P         + AR RL +DE    Q+  L  R++     K  I +P   +GK+ 
Sbjct: 330 ANIHFPETPA---LLTHARRRLVFDEFFYLQLGFLQRRQEQKHLEKSAIFLP---QGKLI 383

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +   + +PF  T +Q+  I +IL+D++    M R++QGDVG+GKT+VA+ ++ AA+++G 
Sbjct: 384 ENFNQLLPFKLTNAQQRVINEILEDLNSSTPMNRLVQGDVGAGKTIVAVFSILAAIQSGY 443

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA +MAP  +LA+QHY  +  +     + VE++TG+   A RR+   ++  G+  +++GT
Sbjct: 444 QAALMAPTEVLAEQHYRKLVTWFNLLHLPVELLTGSTKIAKRREIHSQLETGELPLLVGT 503

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           HAL QD + + +L LV++DEQHRFGVQQR KL  K  +PHVL MTATPIPRTL LT  GD
Sbjct: 504 HALIQDKVNFQRLGLVVIDEQHRFGVQQRAKLLAKGQSPHVLTMTATPIPRTLALTLHGD 563

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +D+S+I E P GR+PI+T  +      +  + ++  +++G++AY I P IEE ++ + R+
Sbjct: 564 LDVSQIDELPPGRQPIQTTALIGKERTQAYDLIRREVAQGRQAYIIFPMIEESEKLDVRA 623

Query: 503 VVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            VE    L E      +I ++HGRMS  +K+ ++ +F++   +++++TTVIEVG+DV +A
Sbjct: 624 AVEEHKKLSETVFPQFNIGLLHGRMSSSEKDEILTNFRDNKSQIIVSTTVIEVGVDVPNA 683

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           ++++IENAE FGL+QLHQLRGRVGRG   S C+L+ +   + +S  RLSVL+ ++DGF I
Sbjct: 684 TVMLIENAERFGLSQLHQLRGRVGRGSHQSYCLLMSNSK-TPDSRQRLSVLEQSQDGFFI 742

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           +E DL+ R  G +LG +QSG+P F +A       +LE+AR  A+ IL  D  L
Sbjct: 743 SEMDLRFRGPGTVLGTRQSGLPDFALASLVEDQEILELARSAAEKILIADSHL 795


>gi|227327133|ref|ZP_03831157.1| ATP-dependent DNA helicase RecG [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 693

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 254/688 (36%), Positives = 388/688 (56%), Gaps = 30/688 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   LN    PLST  GVG   +  L+++       ET   DLL + P  + DR +   
Sbjct: 1   MKGRLLN--TQPLSTLTGVGASQAAKLARL-----GLET-VQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      T+ G I + +      RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGDLLPGMYATVEGEILR-NDITFGSRRMLTCQISDGSGMLTMRFFNFSAAM-KNSLAPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEA 178
           + +T  G+IK+ K    ++HP Y +  +S  V     +  VY    G+     +K+  +A
Sbjct: 111 QHVTAYGEIKRGKIGAEIIHPEYRVQGDSTQVELQESLTPVYPSTEGVRQATLRKLTDQA 170

Query: 179 LSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAY 230
           L+ L   P  E + + L   +S  S+ +A   +H P    D + +       PA++RL  
Sbjct: 171 LALLDANPIDELLPESL--SRSLISLPDALRTLHRP--PPDMQLSELEHGKHPAQQRLIM 226

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           +ELLA  +++L +R   ++    P+  +  + Q++L  +PF PT++QE  + +I  DM++
Sbjct: 227 EELLAHNLSMLAVRAGEQRHKASPLQAQDGLKQRLLAALPFKPTQAQERVVAEIETDMAK 286

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   +
Sbjct: 287 DFPMMRLVQGDVGSGKTLVAALAALRAIANGKQVALMAPTELLAEQHAHNFRQWFEPLGL 346

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V  + G      R+   + IA GQ  +++GTHA+FQ  +++  L LVI+DEQHRFGV Q
Sbjct: 347 EVGWLAGKQKGKARQAQQDAIASGQVSMVVGTHAIFQQQVKFNGLALVIIDEQHRFGVHQ 406

Query: 411 RLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           RL L +K        H L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +
Sbjct: 407 RLALWEKGEEQGFHAHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDS 466

Query: 467 RIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524
           R  ++IER+      EG++AYW+C  IEE      ++       L     +  + ++HGR
Sbjct: 467 RRSDIIERVNNACQQEGRQAYWVCTLIEESDLLEAQAAEATSEELKAALPNLKVGLVHGR 526

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   +K++VM +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVG
Sbjct: 527 MKAQEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVG 586

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RG   S C+LLY  P+SK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F
Sbjct: 587 RGAVASHCVLLYKTPMSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAEF 646

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPD 672
            +A       L+   ++ A+H+    P+
Sbjct: 647 KVADLLRDQELIPQVQRVARHLHEHYPE 674


>gi|325295454|ref|YP_004281968.1| ATP-dependent DNA helicase RecG [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065902|gb|ADY73909.1| ATP-dependent DNA helicase RecG [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 818

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 257/714 (35%), Positives = 417/714 (58%), Gaps = 32/714 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +   F P+ST +G+ KK    L K+     + ET  +D ++Y P  + DR     +S + 
Sbjct: 118 IKAFFQPISTIKGIKKKTVERLKKL-----SIET-ILDAIYYLPFRYEDRTTITPMSFLK 171

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRK- 122
             ++  + G +      +  K++   + +   D TG +TL+F   +      + F   K 
Sbjct: 172 PGQVFLVKGKVVNVLVIETSKKKKKILKVILYDKTGTVTLIFLQERVLNYYKMLFSKAKE 231

Query: 123 ----ITVTGKIKKLKNRIIMVHPHY-IFHNSQDV--NFPLIEAVYSLPTGLSVDLFKKII 175
               +   G +K+      MVHP   IF  ++       +I  VY    G+     +K I
Sbjct: 232 LEKEVLAYGIVKREMGSYSMVHPEVEIFDKNRGKLEKLGVILPVYHSSEGIKQSTIRKDI 291

Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP--RKAKDF-EWTSPARERLAYD 231
              + R +P LPE++ ++LL++ SFP IA AF  +H P    A+D   + +P+++R+ +D
Sbjct: 292 GNIVKRVIPFLPEYLPQELLKRYSFPDIATAFWRVHFPFDEDAQDLLNFKTPSQKRVIFD 351

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           EL   Q+AL L +++ K E GI   V+ ++  +  + +PFS T +QE  +++I++DM + 
Sbjct: 352 ELFLFQLALALHKQKIKGEKGIAFPVKKELVDEFKKALPFSLTNAQEKVLREIMEDMKKD 411

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVGSGKT+VA  A   A ++G Q  +MAP  ILA QH++  +++ +   I 
Sbjct: 412 EPMNRLVQGDVGSGKTVVAAAAAFFAAKSGYQTAVMAPTEILANQHFKKFREFLKPFSIK 471

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V ++TG+M +  +      I  G   +++GTHAL Q+++++  L L I+DEQHRFGV+QR
Sbjct: 472 VGLLTGSMTKKEKETMYRAIKEGFIQVVVGTHALIQETVEFKNLGLAIIDEQHRFGVKQR 531

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           ++L +K   P VL+MTATPIPRTL +T+ GD+DIS I E PAGRKPIKT I+  +  D +
Sbjct: 532 VELKKKGKLPDVLVMTATPIPRTLAMTAYGDLDISVIDELPAGRKPIKTKILFEDERDTL 591

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-----SIAIIHGRMS 526
           +  L   L    + Y + P IEE ++   ++  E    +H ++       S+ ++HG+M 
Sbjct: 592 VRFLLKELKMKNRVYIVYPLIEESEKLELKAATE----MHHYWEKKLKPYSVGLLHGKMK 647

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ +M+ FK G  ++L++TTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG
Sbjct: 648 QEEKDEIMEKFKRGEYQVLVSTTVIEVGVDVPEATVMVIEHAERFGLAQLHQLRGRVGRG 707

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C L+    +S++S  RL VL++T DGF IAE DL+ R  GEI G +QSG+  F I
Sbjct: 708 NRQSYCFLITKRSISEDSIKRLRVLESTNDGFKIAEADLQFRGPGEIFGTRQSGLGDFKI 767

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A       +L+IAR++A+ ++ ++P+L  +    ++ L+  +++ E F F+  G
Sbjct: 768 ADLRRDFEILKIAREEAQKLVERNPELEGL--NDLKELMR-FRFGEKFDFVEVG 818


>gi|167618758|ref|ZP_02387389.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis Bt4]
          Length = 729

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 249/662 (37%), Positives = 372/662 (56%), Gaps = 29/662 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 56  TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 115

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP        D + PL +A
Sbjct: 116 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPSV---KVVDEDAPLPQA 171

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  + +  LQ    PS+A+A  I+H+P
Sbjct: 172 LTPVYPSTAGVSQAYLRKAIDNALTRTPLPELLPPEVARAYLQPLDVPSLADAVRILHHP 231

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263
               D     + T PA  R+ +DELLA Q++L    ++ +      +    +     ++ 
Sbjct: 232 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGASLSA 291

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 292 RLYAALPFTLTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 351

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTH
Sbjct: 352 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKDKRAALEAAALGTARLVIGTH 411

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRT
Sbjct: 412 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 471

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE
Sbjct: 472 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 531

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 532 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 591

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ 
Sbjct: 592 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 651

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A H++   PD+
Sbjct: 652 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAAHLIAGHPDV 711

Query: 674 TS 675
            +
Sbjct: 712 VA 713


>gi|113474931|ref|YP_720992.1| ATP-dependent DNA helicase RecG [Trichodesmium erythraeum IMS101]
 gi|110165979|gb|ABG50519.1| ATP-dependent DNA helicase RecG [Trichodesmium erythraeum IMS101]
          Length = 827

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 243/652 (37%), Positives = 385/652 (59%), Gaps = 23/652 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99
           DLL+Y+P   ID   +  I  +     VTI G I + + F   K +   IL   L D TG
Sbjct: 158 DLLYYYPRDHIDYARQVNIRNLEAGETVTIIGKIKRFNCFSSPKNKKLTILELTLTDSTG 217

Query: 100 EITLLFFY-------RKTEMLKNVFFE-GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151
           +I +  F+       +  +M++  F+  G  +  +G +K+ K    + +P     +S+  
Sbjct: 218 QIKISRFFAGPRFSNKGWQMMQKKFYPVGATVAASGLVKETKYGKNLDNPEIEVLDSEGS 277

Query: 152 NFPLIE-----AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
               I+      VY L  G+  D+ ++ I + L +     E + +  L +     +  A 
Sbjct: 278 EIESIKIGRLVPVYPLTEGVEADVVRRAIFKILPKAENFSETLPEIFLNQYQLIDLKNAI 337

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKI 265
             IH P    D +  + AR RL +DE    Q+ LL  R+ Q K EIG+ + V GK+ +K 
Sbjct: 338 KNIHFP---IDRDCLAAARRRLVFDEFFYLQLGLLKRRQLQKKTEIGVALPVTGKLIKKF 394

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
            + +PF  T +Q+  + +IL+D+ +   M R++QGDVG+GKT+VA++A+ AAV+ G QA 
Sbjct: 395 YKLLPFQLTNAQKRVVNEILRDLQKPEPMKRLVQGDVGAGKTVVAVVAILAAVQVGYQAA 454

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  +LA+QHY+ +  +     + VE++TG+   A RR+   ++  G+  I++GTHAL
Sbjct: 455 LMAPTEVLAEQHYDKLVTWFNLLHLPVELLTGSTKIAKRREIYSQLETGELPILVGTHAL 514

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            QD++ ++KL LV++DEQHRFGV QR KL QK  +PH L MTATPIPRTL LT  GD+D+
Sbjct: 515 IQDTVNFHKLGLVVIDEQHRFGVHQRAKLQQKGESPHFLAMTATPIPRTLALTLHGDLDV 574

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S+I E P GR+PI+T  +   +  +  + ++  + +G++ Y + P +EE ++ + +S +E
Sbjct: 575 SQIDELPPGRQPIQTTNLTGRQRKKAYDLIRREIVQGRQVYVVLPLVEESEKLDVKSAIE 634

Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
               L E       I ++HGRMS  +K+ V+ +F+N   ++L++TTV+EVG+DV +A+++
Sbjct: 635 EHQKLAEKIFPEFQIGLLHGRMSSAEKDQVISTFRNNQTQILVSTTVVEVGVDVPNATVM 694

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +IENAE FGL+QLHQLRGRVGRG   S C+L+     S ++  RL VL+ ++DGF IAE 
Sbjct: 695 LIENAERFGLSQLHQLRGRVGRGVHHSYCLLMRGAG-STDATERLKVLEQSQDGFFIAEM 753

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           D++ R  G++LG KQSG+P F +A       +LE+AR  A  ++ +D  L S
Sbjct: 754 DMRLRGPGQVLGTKQSGLPDFALASLVEDQEVLELARGAALQVMEKDESLNS 805


>gi|170728911|ref|YP_001762937.1| ATP-dependent DNA helicase RecG [Shewanella woodyi ATCC 51908]
 gi|169814258|gb|ACA88842.1| ATP-dependent DNA helicase RecG [Shewanella woodyi ATCC 51908]
          Length = 691

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 264/703 (37%), Positives = 390/703 (55%), Gaps = 36/703 (5%)

Query: 10  FAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
             P++   GV KK +  L+K+ IN          DLLF+ P  + DR     I+ +    
Sbjct: 6   LVPVTELNGVAKKMAERLAKLGINT-------VQDLLFHLPLRYEDRTQIYPIASLYPGS 58

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
             TI   I Q S     ++R     + D TG + L FF       KN    G  I   G+
Sbjct: 59  YGTIEAVI-QSSQIVQGRKRMMTCTVRDDTGSMVLRFFNFSMAQ-KNGLQNGTLIRAYGE 116

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLP--- 183
           I++ K +  ++HP Y   +  D       +  VY    GL    + K+  +ALS L    
Sbjct: 117 IRRGKQQPEIIHPEYKLVSEYDSAALSDTLTPVYPTTEGLKQASWIKLTDQALSLLENGG 176

Query: 184 ---VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAG 236
              +LP  ++ + L      S+ EA  ++H P          +   PA++RL  +ELLA 
Sbjct: 177 LQELLPPQLQPNNL------SLKEALQLLHRPHTGVALFELEQGNHPAQQRLIQEELLAH 230

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            +++L +R++  ++  I +   G++    L+ +PF PT +Q+    DI +D+ + + M+R
Sbjct: 231 NLSMLKLRQRSNQDNAISMPATGQLLNPFLKELPFKPTGAQQRVGADICRDLEKPSPMMR 290

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   + V  + 
Sbjct: 291 LVQGDVGSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAINFSQWFEPLGLKVGWLA 350

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G +    R ++L  I  G AH++IGTHA+FQD + + KL L+I+DEQHRFGV QRL L +
Sbjct: 351 GKLKGKTRAQSLADIESGDAHMVIGTHAIFQDKVIFNKLALIIIDEQHRFGVHQRLGLRE 410

Query: 417 KATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           K  +    PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV +   R  EVI
Sbjct: 411 KGISQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAVSDVRRSEVI 470

Query: 473 ERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
           ER++  V ++G++ YW+C  I+E +    ++  +    L        I ++HGRM   +K
Sbjct: 471 ERVRQAVTNDGRQVYWVCTLIDESEVLECQAAEDTAAELSIALAELKIGLVHGRMKSAEK 530

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           ++VM  FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S
Sbjct: 531 QAVMAEFKAGNLNLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSIAS 590

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+L+Y  PLS+ +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+    IA   
Sbjct: 591 HCLLMYKAPLSQMATKRLGVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGVADMKIADLI 650

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
              SL+   +K A H++ Q PD  +V G   R L    QY +A
Sbjct: 651 RDQSLIPHIQKLAVHVMEQAPD--NVDGIVQRWLGEREQYVQA 691


>gi|319776734|ref|YP_004139222.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047]
 gi|329123155|ref|ZP_08251725.1| DNA helicase RecG [Haemophilus aegyptius ATCC 11116]
 gi|317451325|emb|CBY87563.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047]
 gi|327471710|gb|EGF17152.1| DNA helicase RecG [Haemophilus aegyptius ATCC 11116]
          Length = 693

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/678 (37%), Positives = 391/678 (57%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI   G  N     DLLF+ P  + DR     I+ +  E+  T
Sbjct: 10  PLTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q       +R    + L+DGT +I L FF     M +N F  G ++   G++K+
Sbjct: 64  IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y  +  N+  V    +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRYMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQ 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
             ++L  +  P   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  
Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   +P++ +  + Q+ L  + F PT +Q+  + DI QD+ +   M+R++QGDV
Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLLFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++ R+K  
Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM   +K+ VM  
Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y
Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +A       ++
Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
              +  AK ++ + PD+ 
Sbjct: 659 PTVQHYAKSLIQKYPDVA 676


>gi|161505719|ref|YP_001572831.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867066|gb|ABX23689.1| hypothetical protein SARI_03895 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 693

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 254/676 (37%), Positives = 377/676 (55%), Gaps = 28/676 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPALQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  ++L ++PF+PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHAQPLSTNDTLKHQLLASLPFNPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIVHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARVTQQEAIASGQVQMVVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRPEIINRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              +E ++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 478 ACTTEDRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 RFKQGEMHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAI 657

Query: 656 LEIARKDAKHILTQDP 671
           +   ++ A+HI  + P
Sbjct: 658 IPEVQRIARHIHERYP 673


>gi|302392174|ref|YP_003827994.1| ATP-dependent DNA helicase RecG [Acetohalobium arabaticum DSM 5501]
 gi|302204251|gb|ADL12929.1| ATP-dependent DNA helicase RecG [Acetohalobium arabaticum DSM 5501]
          Length = 793

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 247/689 (35%), Positives = 395/689 (57%), Gaps = 23/689 (3%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           +GVGKK +  L+++      +  R  D+LFY P  + D      I E+S +  VT TG +
Sbjct: 117 KGVGKKRAEKLARL----EIDTLR--DMLFYIPRDYRDWSKNLPIRELSPDSEVTATGQV 170

Query: 77  SQHSSFQLQKRRPY---KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
               S +L+ R+     K++++D TG +  ++F +    +K  F  G  ++ +G++K+  
Sbjct: 171 V--DSTELRPRKGLTITKVIISDNTGRLAGVWFNQS--YIKQKFKPGMAVSFSGEVKQEY 226

Query: 134 NRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEK 191
             + + HPHY I  + ++++   I  VYS   GLS +L +KI+   L   L   PE +  
Sbjct: 227 GELQITHPHYEIMDSDKELDPGKILPVYSTTQGLSQNLLRKIVSRILKEHLDRFPESLSP 286

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-KKE 250
            +  K     + EA   IH P + ++      AR+RLA+ EL   Q+ +LL +     +E
Sbjct: 287 GIKDKYDLLDVKEALYKIHFPDQIRE---VKEARQRLAFGELFILQLGILLKKTDLLTEE 343

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            G+      ++    L ++PF  T +Q     +I  ++     M R++QGDVGSGKT+VA
Sbjct: 344 EGLVHTGSDELITNFLSDLPFELTSAQRRVWAEIKDNLESSIVMNRLVQGDVGSGKTVVA 403

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +A+  AV +G Q  +MAP  ILA+QHY  +K+  +   + + ++ G++ ++ R++ +  
Sbjct: 404 TLALLKAVSSGYQGAMMAPTEILAEQHYLSLKESLEEYGLQIGLLVGSLKKSERKEVIAG 463

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           I  G+  I+IGTHAL Q+ + + KL LVI DEQHRFGV+QR  L +K   P VL+MTATP
Sbjct: 464 IESGEVDIVIGTHALLQEEVSFAKLGLVITDEQHRFGVRQRAILKEKGENPDVLVMTATP 523

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL LT  GD+D+S I E P GRKP+ T        D++ + ++  +  G++AY +CP
Sbjct: 524 IPRTLALTLYGDLDLSVIDELPPGRKPVITEWRREKDFDKIFDFIRQEVKSGRQAYIVCP 583

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +EE +E + RS       L E       I ++HG++   +KE+VM+ F++    +L++T
Sbjct: 584 LVEESEELDVRSAENMAEKLDEDIFPEFKIGLLHGQLKTDEKEAVMEGFRSQQIDILVST 643

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGR E  S CIL+  P  ++    R+
Sbjct: 644 TVIEVGVDVANATLMVILDAQRFGLAQLHQLRGRVGRSEYQSYCILVADPG-TETGRERM 702

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            ++  + DGF+IAEEDL+ R  GE  G +Q G+P   +A       L+E+ARK+A+ ++ 
Sbjct: 703 KIMTQSTDGFVIAEEDLQLRGPGEFFGTRQHGLPDLEVADLLRDSRLVELARKEARKVVD 762

Query: 669 QDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
            DP L     Q +  LL   ++ + F+ I
Sbjct: 763 SDPKLQQEEHQLLADLLQ-AKFGDGFELI 790


>gi|268317690|ref|YP_003291409.1| ATP-dependent DNA helicase RecG [Rhodothermus marinus DSM 4252]
 gi|262335224|gb|ACY49021.1| ATP-dependent DNA helicase RecG [Rhodothermus marinus DSM 4252]
          Length = 700

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 252/713 (35%), Positives = 393/713 (55%), Gaps = 34/713 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           LN L   +    GVG + +  L+++      +  R  DLL Y P  ++DR     +  + 
Sbjct: 4   LNILSTEVRYLAGVGPRRAEVLARV----GVHTVR--DLLHYFPRRYLDRSTIVPLRRL- 56

Query: 66  EERI--VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           +ER+  VT+ G +      + + R+ ++++L D +G      ++ +   +   F  G ++
Sbjct: 57  DERMGSVTVVGTVRVAGVVEGKGRKRFELILEDESGGRLKCVWFNRLNWVAKAFKPGDRV 116

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP-------TGLSVDLFKKIIV 176
              GK+++      M HP +   + +         +   P        GL+   F++I+ 
Sbjct: 117 AFHGKVQRFGYTFSMTHPDFDRLDGEGAALATGRIIALYPGGAALEKVGLTSRTFRRILY 176

Query: 177 EALS----RLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
                   +LP +LPEWI      +        A   +H PR   +    + ARERL ++
Sbjct: 177 TFFKQHGLKLPEILPEWIRT----RYGLMDGRVALRAVHFPRSQAEL---AQARERLKFE 229

Query: 232 ELLAGQIALLLMR-KQFKKEIGIP-INVEGKIAQKILRNI-PFSPTKSQESAIKDILQDM 288
           EL    I L+L R KQ ++ +  P     G+   + L  I PF  T +Q+ A++DI++D 
Sbjct: 230 ELFF--IQLMLARTKQIRQAVAGPRFGPPGERFHRFLNEILPFELTNAQKRALEDIIRDT 287

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           +   +M R++QGDVGSGKT+VA+ A+  AV+ G Q+  M P  ILA+QHY  +++Y    
Sbjct: 288 TSGLQMNRLIQGDVGSGKTVVAMAAILHAVDNGYQSAFMVPTEILAEQHYANMRRYLDPL 347

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            + V ++ G   ++ R + L  +A G+AH+ +GTHA+ Q+++Q+++L L IVDEQHRFGV
Sbjct: 348 GVEVRLLLGGQRKSLREEILADLAEGRAHVAVGTHAVIQETVQFHRLGLAIVDEQHRFGV 407

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            QR +L  K   PH+LLMTATPIPR+L +T  GD+D+S I E+PAGRKP+ T I    R 
Sbjct: 408 VQRAELFSKGENPHMLLMTATPIPRSLAMTLYGDLDVSIIDERPAGRKPVITWIRSEKRR 467

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSD 527
            EV   L+  L +G++AY + P +EE ++ + +     +  L E F    + +IHGRM  
Sbjct: 468 GEVYAFLREQLRQGRQAYVVYPLVEESEKMDLQDAENGYRRLKELFRPYRVDLIHGRMLP 527

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +KE  M+ FKNG   +L+ATTVIEVG+DV +A+++IIE+AE FGL+QLHQLRGRVGRG 
Sbjct: 528 YEKEEAMERFKNGETDILVATTVIEVGVDVPNATVMIIEHAERFGLSQLHQLRGRVGRGA 587

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           E S CIL+     +  +  RL V+  T+DGF I+E DLK R  G+  G +QSG+P   IA
Sbjct: 588 EQSYCILMVDHRRTAEAEERLRVMAETDDGFKISEMDLKLRGAGDFFGTRQSGLPDLKIA 647

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
                  +L  AR+ A  ++ +DP+L +     +R     +    +  F R G
Sbjct: 648 DITQDQPILIKAREAAFELIRRDPNLEAPEHAMLRAYYDRFYATRSLGFARVG 700


>gi|253987679|ref|YP_003039035.1| ATP-dependent DNA helicase RecG [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638586|emb|CAR67206.1| atp-dependent dna helicase recg (ec 3.6.1.-) [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779129|emb|CAQ82289.1| ATP-dependent DNA helicase RecG [Photorhabdus asymbiotica]
          Length = 706

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 258/686 (37%), Positives = 391/686 (56%), Gaps = 46/686 (6%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   +  L+K+   G  N     DLL + P  + D+     I+++      T
Sbjct: 23  PLTSLHGVGASQAAKLAKM---GLIN---LQDLLLHFPLRYEDQTRLYTINDLLPGISAT 76

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           +TG I  H++    +RR     ++DGTG +TL FF     M KN   +G+++   G+I++
Sbjct: 77  VTGEIL-HTNIIFGRRRMMICQISDGTGVLTLRFFNFSAAM-KNNLAKGKQVVAYGEIRR 134

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL------ 182
                 ++HP Y        N  L E    +Y    G+     +K+I +AL  L      
Sbjct: 135 GSQGAEIIHPEYKIQTYAG-NVRLQETLTPIYPTTEGIRQATLRKLIEQALQLLDTCAIN 193

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDELLAGQI 238
            +LPE + + ++      S+ +A + +H P       D E    PA  RL  +ELLA  +
Sbjct: 194 ELLPEELSRSMI------SLPQALHTLHRPTPDIVLADLETGKHPAHRRLILEELLAHHL 247

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           ++L ++   ++     +  E K+ Q+ L  +PF+PT +Q+  + +I QD+++   M+R++
Sbjct: 248 SMLEVKVGAQRYHAQSLPTENKLKQQFLNRLPFTPTNAQQRVVAEIEQDLAKDIPMMRLI 307

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   I +  + G 
Sbjct: 308 QGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLEPLDIQIGWLAGK 367

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R+K  E IA GQ  +I+GTHA+FQ+ +++  L LVI+DEQHRFGV QRL L +K 
Sbjct: 368 QKGKARQKQQEAIASGQVAMIVGTHAMFQEQVKFSGLALVIIDEQHRFGVHQRLALWEKG 427

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                 PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R +EVI+R
Sbjct: 428 REQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRREEVIKR 487

Query: 475 LK-VVLSEGKKAYWICPQIEEKK--ESNFRSVVERFNSLHEHFTSS-----IAIIHGRMS 526
           +K   L E ++AYW+C  IE+    E+    V        E  T +     + ++HGRM 
Sbjct: 488 IKNACLDENRQAYWVCTLIEDSDVLEAQAAQVTS------EELTLALPELKVGLVHGRMK 541

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K +VM++FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 542 AAEKLAVMEAFKCGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 601

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLS  +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 602 AIASHCVLLYKTPLSSTARIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 661

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A       +L   ++ A+HI  + P+
Sbjct: 662 ADLLRDQGMLPEVQRIARHIHQRYPE 687


>gi|319898189|ref|YP_004136386.1| ATP-dependent DNA helicase [Haemophilus influenzae F3031]
 gi|317433695|emb|CBY82083.1| ATP-dependent DNA helicase [Haemophilus influenzae F3031]
          Length = 693

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/678 (37%), Positives = 391/678 (57%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI   G  N     DLLF+ P  + DR     I+ +  E+  T
Sbjct: 10  PLTSLSGVGAAISNKLAKI---GIHN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q       +R    + L+DGT +I L FF     M +N F  G ++   G++K+
Sbjct: 64  IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEVKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + HP Y  +  N+  V    +  +YS   GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRYMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQ 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
             ++L  +  P   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  
Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQK 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   +P++ +  + Q+ L  + F PT +Q+  + DI QD+ +   M+R++QGDV
Sbjct: 239 VRLGTQQFSALPLHYQTDLKQRFLATLLFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLRKKGEKAG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++ R+K  
Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM   +K+ VM  
Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y
Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +A       ++
Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
              +  AK ++ + PD+ 
Sbjct: 659 PTVQHYAKSLIQKYPDVA 676


>gi|134294797|ref|YP_001118532.1| ATP-dependent DNA helicase RecG [Burkholderia vietnamiensis G4]
 gi|134137954|gb|ABO53697.1| ATP-dependent DNA helicase RecG [Burkholderia vietnamiensis G4]
          Length = 783

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 244/661 (36%), Positives = 373/661 (56%), Gaps = 27/661 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI-SQHSSFQLQKRRPYKILLNDG 97
           TR IDL+ + P  + D      I E+    I    G +     +++ +++   KI  +DG
Sbjct: 110 TRSIDLVLHLPMRYEDETTLTPIDELLPGGIAQTEGVVFDNEVAYRPRRQLVVKIRDDDG 169

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LI 156
             ++ L F       +K +   G+++ V G ++     + MVHP      + D   P ++
Sbjct: 170 A-QLVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVL 226

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
             VY    G+S    +K I  A+ R P+   LP  IE+D L+    P++A+A  I+H+P 
Sbjct: 227 TPVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIERDYLKPLGVPTLAQAVRILHHPG 286

Query: 214 KAKD----FEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIP---INVEGKIAQK 264
              D     + + PA  R+ ++ELLA Q++L      ++ +    +P    +  G +  +
Sbjct: 287 VDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRSAPAMPRRAADDAGSLTTR 346

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +   +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT+VA +A   A++AG QA
Sbjct: 347 LYAALPFTLTGAQSRVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQA 406

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTHA
Sbjct: 407 ALMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHA 466

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTL 435
           + QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL
Sbjct: 467 IIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTL 526

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +T   D+++S I E P GR P+ T ++   R  EVI R++     G++ YW+CP IEE 
Sbjct: 527 AMTYYADLEVSTIDELPPGRTPVLTRLVADARRGEVIARVREAALTGRQVYWVCPLIEES 586

Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           +    ++ VE + +L        + ++HGR+S  DK +VMD+F     +LL+ATTVIEVG
Sbjct: 587 ETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAFTRNDVQLLVATTVIEVG 646

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL  ++ T
Sbjct: 647 VDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYSGPLSLAGRERLKTMRET 706

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            DGF IA  DL+ R  GE LG +QSG      A  E    L++ AR  A  ++   PD+ 
Sbjct: 707 TDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAASRLIAAYPDVV 766

Query: 675 S 675
           +
Sbjct: 767 T 767


>gi|238918011|ref|YP_002931525.1| ATP-dependent DNA helicase RecG [Edwardsiella ictaluri 93-146]
 gi|238867579|gb|ACR67290.1| ATP-dependent DNA helicase RecG, putative [Edwardsiella ictaluri
           93-146]
          Length = 693

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 251/681 (36%), Positives = 383/681 (56%), Gaps = 38/681 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   +  L+K+            DLL + P  + DR    +I E+     VT
Sbjct: 10  PLTSLSGVGASQAGKLAKL------GLVTIQDLLLHLPLRYEDRTRLYRIGELQPGITVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + +     +RR     ++DG+G +TL FF     M KN    G+++   G+IK+
Sbjct: 64  VEGEVLR-TDVAFGRRRMLTSQISDGSGLLTLRFFNFSAAM-KNSLAPGKRVLAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPV--LP 186
             +   ++HP Y      D    L EA   VY    G+     +K+  +AL+ L +  +P
Sbjct: 122 GHHGAEIIHPEYRIQGD-DAAPALQEALTPVYPTTEGVRQATLRKLSDQALALLDITPIP 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLL 242
           E + + L Q     S+ EA + +H P     +    +   PA+ RL  +ELLA  +++L 
Sbjct: 181 ELLPESLGQ--GLISLPEALHTLHRPPPDIHQEDLAQGRHPAQRRLILEELLAHHLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   + +  +  +  + L  +PF+PT +Q   + DI +DM++   M+R++QGDV
Sbjct: 239 VRADNQRHRALALATDDHLKHRFLAALPFTPTTAQRRVLDDIEKDMAKSVPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G GKTLVA +A   A+  G Q  +MAP  +LA+QH    +++     + V  + G     
Sbjct: 299 GCGKTLVAALAALRAIAHGHQVALMAPTELLAEQHATNFRQWFAPLGLSVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  +  IA G+  +++GTHALFQ+ +Q+  L LVI+DEQHRFGV QRL L +K  A  
Sbjct: 359 ARQTQMAAIAAGEVDMVVGTHALFQEQVQFADLALVIIDEQHRFGVHQRLALWEKGEAQG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I   R  ++++R++  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIADTRRQQILDRVRHA 478

Query: 478 VLSEGKKAYWICPQIEEKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            L E ++AYW+C  IEE         E    +++++   L       IA++HGRM   DK
Sbjct: 479 CLEEKRQAYWVCTLIEESDLLEAQAAEVTAETLIQQLPELR------IALVHGRMKATDK 532

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + VM  FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S
Sbjct: 533 QRVMAQFKAGEVDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIAS 592

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+LLY  PLS+ +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A   
Sbjct: 593 HCVLLYKSPLSQTAQRRLQVLRDSNDGFVIAQRDLEIRGPGEMLGTRQTGNAEFRVADLL 652

Query: 651 LHDSLLEIARKDAKHILTQDP 671
              +L+   ++ A+H+ +  P
Sbjct: 653 RDQALIPEVQRIARHLHSAYP 673


>gi|301170495|emb|CBW30102.1| ATP-dependent DNA helicase [Haemophilus influenzae 10810]
          Length = 693

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/678 (37%), Positives = 390/678 (57%), Gaps = 26/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI   G  N     DLLF+ P  + DR     I+ +  E+  T
Sbjct: 10  PLTSISGVGAAISNKLAKI---GIQN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q       +R    + L+DGT +I L FF     M +N F  G ++   G++K+
Sbjct: 64  IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQAGVRVKAFGEVKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            ++   + HP Y  +  N+  V    +  +Y    GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRHMPEIHHPEYQIVRDNAPIVLEETLTPIYPTTEGLKQNSLRKLTDQALA---LLDKVQ 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
             ++L  +  P   S+ EA  ++H P      E       PA+ RL ++ELLA  +A+  
Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQLRLIFEELLAHNLAMQK 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   +P++ +  +  + L  +PF PT +Q+  + DI QD+ +   M+R++QGDV
Sbjct: 239 VRLGTQQFSALPLHYQTDLKLRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 SRQAELEKIKTGTVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAG 418

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++ R+K  
Sbjct: 419 FYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM   +K+ VM  
Sbjct: 479 CVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMR 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y
Sbjct: 539 FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  IA       ++
Sbjct: 599 KPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRIANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLT 674
              +  AK ++ + PD+ 
Sbjct: 659 PTVQHYAKSLIQKYPDVA 676


>gi|289209171|ref|YP_003461237.1| ATP-dependent DNA helicase RecG [Thioalkalivibrio sp. K90mix]
 gi|288944802|gb|ADC72501.1| ATP-dependent DNA helicase RecG [Thioalkalivibrio sp. K90mix]
          Length = 687

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 249/673 (36%), Positives = 373/673 (55%), Gaps = 42/673 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDR-------HYRPKI 61
           L  PL+ F+GVG   +  L+++       + R  DLL + P  F DR         RP +
Sbjct: 3   LQTPLTGFKGVGPAVAERLARL----GLEQAR--DLLLHLPLRFEDRTRLTPIRALRPGL 56

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           S + E R+         H+    ++RR   + L +    I L FF+  +   +     G 
Sbjct: 57  SALFEGRVT--------HAEVVHRRRRMLVVTLEEDGASILLRFFHFGSGQQRR-LSPGT 107

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA----VYSLPTGLSVDLFKKIIVE 177
           +I   G+ + +   +  VHP      ++    P++E     +Y    G+S  L ++++ E
Sbjct: 108 RIRAFGEPRGMPGAMECVHPELQVVGTKP---PVLETHLTPIYPTTEGISQKLLRQLVTE 164

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF-------EWTSPARERLAY 230
           AL     LP+ + +  L ++  P +  A   +H+P    +        E   PAR RLA 
Sbjct: 165 ALPTTEQLPDLLPE--LNQRQLPGLHTALQQLHHPPARAEVLDALDTAEQRGPARTRLAL 222

Query: 231 DELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
           +EL A Q+A +   +  +     P I   G + +++   +PF+PT +QE  I ++ +D++
Sbjct: 223 EELTAHQLARMEQNRTPQDARRAPVIRPAGALWRQLRDQLPFAPTSAQERVIHEVREDLA 282

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           +   M R++QGDVGSGKTLVA+ A  AAVEAG Q   MAP  +LA+QH   + ++ +   
Sbjct: 283 RPTPMNRLVQGDVGSGKTLVAVAAALAAVEAGHQVAFMAPTELLARQHGRNLAQWLEPLG 342

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + V  + G    + R + L  +A G   + IGTHALFQ+ +++++L L I+DEQHRFGV 
Sbjct: 343 VSVAWLGGRQGASERGQLLSELASGHRQVAIGTHALFQEEVRFHRLGLAIIDEQHRFGVH 402

Query: 410 QRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           QR+ L  K     PH L+MTATPIPRTL +    D+D S I E+P GR P++T +I   R
Sbjct: 403 QRMALRDKGNGQMPHQLIMTATPIPRTLAMALYADLDSSVIDERPPGRTPVRTALISHER 462

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            DEVI+R++     G +AYW+CP +EE ++    S       L E     SI + HGRM 
Sbjct: 463 RDEVIDRIRAACGSGTQAYWVCPLVEESEQLEAESAEATAERLREALPELSIGLAHGRMK 522

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             ++++VM+ F+ G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 523 GPERDTVMERFRAGALDLLVATTVIEVGVDVPNASLMIIENAERMGLSQLHQLRGRVGRG 582

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S+C+LLY PPL + +  RL  ++ T+DGF IAE DL+ R  GE+LG +Q+G   F +
Sbjct: 583 NTASACVLLYRPPLGETARERLEAMRRTDDGFEIAEVDLRLRGPGELLGTRQTGDRSFRV 642

Query: 647 AQPELHDSLLEIA 659
           A       LLE A
Sbjct: 643 ADWSRDQDLLEEA 655


>gi|197286695|ref|YP_002152567.1| ATP-dependent DNA helicase RecG [Proteus mirabilis HI4320]
 gi|194684182|emb|CAR45643.1| ATP-dependent DNA helicase [Proteus mirabilis HI4320]
          Length = 695

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 247/653 (37%), Positives = 376/653 (57%), Gaps = 28/653 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   +  L+KI            DLL + P  + D+ +   IS++      T
Sbjct: 10  PLTTLHGVGASQADKLAKI------GLVTVEDLLLHLPLRYEDQTHLYAISDLLPGIPAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           ++G I + +     +R+     ++DG+G +TL FF   T  +KN   +G+++   G+IK+
Sbjct: 64  VSGEILR-TEVNFGRRKMMTCQISDGSGILTLRFF-NFTAAMKNNLAQGKQVIAYGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
                 ++HP Y I     +V     +  +YS   GL     +K+I +AL+   +L    
Sbjct: 122 GSRGPEIIHPEYKIKVAGSEVKLQETLTPIYSTTEGLRQTSLRKLIEQALT---LLDTCA 178

Query: 190 EKDLLQKK---SFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
             +LL  +     P +A A   +HNP     F    +   PA++RL  +ELLA  + +L 
Sbjct: 179 INELLPDQFIYGLPPLATALRTLHNPPPDIAFAELEKGQHPAQKRLIIEELLAHNLGMLN 238

Query: 243 MRKQFKKEIGIPINVE--GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            R   +     P+ +     + ++ L  +PF+PT +Q+  + +I QD+ +   M+R++QG
Sbjct: 239 ARAGAQSYRAEPLLMPHGSTLREQFLATLPFTPTTAQQRVVNEIEQDLEKNYPMMRLIQG 298

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA ++   A+  G Q  +MAP  +LA+QH    +K+ +   I V  + G   
Sbjct: 299 DVGSGKTLVAALSALRAIANGKQVALMAPTELLAEQHALTFRKWFEPFGIQVGWLAGKQK 358

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R      IA+G+  IIIGTHA+FQ+ ++++ L LVI+DEQHRFGV QRL L +K   
Sbjct: 359 GKAREAQQNAIANGEVSIIIGTHAIFQEQVKFHSLALVIIDEQHRFGVHQRLALWKKGEE 418

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R +++IER++
Sbjct: 419 QGFHPHQLVMTATPIPRTLAMTAYADMDTSIIDELPPGRTPVTTVAIPDTRRNDIIERIR 478

Query: 477 VVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           V  SE  ++AYW+C  IE+ +    ++    ++ L        I ++HGRM   +K++VM
Sbjct: 479 VACSEENRQAYWVCTLIEDSEVLEAQAAQVIYDELTIALPEIKIGLVHGRMKPAEKQAVM 538

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK    +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S C+L
Sbjct: 539 ADFKENKLQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVL 598

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           LY  PL++ +  RL VL+++ DGF+IA++DL+ R  GE+LG KQ+G  +F +A
Sbjct: 599 LYKTPLTQTARLRLQVLRDSNDGFVIAQKDLEIRGPGELLGTKQTGNAQFKVA 651


>gi|260684132|ref|YP_003215417.1| ATP-dependent DNA helicase RecG [Clostridium difficile CD196]
 gi|260687791|ref|YP_003218925.1| ATP-dependent DNA helicase RecG [Clostridium difficile R20291]
 gi|260210295|emb|CBA64595.1| ATP-dependent DNA helicase [Clostridium difficile CD196]
 gi|260213808|emb|CBE05774.1| ATP-dependent DNA helicase [Clostridium difficile R20291]
          Length = 689

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 251/674 (37%), Positives = 391/674 (58%), Gaps = 18/674 (2%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +L  L+  +   +G+G K +  L+K+            DLL+Y P  F DR+   KI+++
Sbjct: 3   YLLDLYKDVQYVKGIGPKKADKLNKL------GIFTLKDLLYYFPRQFEDRNNLKKIAQL 56

Query: 65  SEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            +   VTI   IS  ++F  ++     KI + D TG   L+FF +    +KN F  G  I
Sbjct: 57  EDGEKVTIKAVISSINTFSPKEGMTLTKIDVKDETGSAKLVFFNK--SYIKNTFRPGDSI 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182
            V GK+KK  N + +      +  +   N      VY L  G++      II   L  + 
Sbjct: 115 LVFGKVKKKFNNLELTSCELEYLTNSPKNTCRFMPVYQLTYGVTNKEIMSIIRTVLEDKE 174

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            ++ E++ + +++K    SI  A   IH+P   +  +    A  R+ ++ELL  Q+ L +
Sbjct: 175 LIIQEYMPQRIIEKYRLCSIDFAVRNIHSPSSKESLKI---ALYRIVFEELLILQLGLFV 231

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +    KE GI      K  +KI+  +PF  TK+Q  A+ +I+QDM+ +  M R++QGDV
Sbjct: 232 FKSGRNKEDGIKFET-SKDLKKIISALPFKLTKAQNRALDEIIQDMNLEKIMNRLVQGDV 290

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VAL+A+A  V  G Q  +MAP  ILA QHY  + +  ++  I V ++ G++ + 
Sbjct: 291 GSGKTVVALLALANCVLNGYQGALMAPTEILAGQHYISLTESLKDFGINVGLLIGSLTKK 350

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +   LE+I + +  I+IGTHAL +D +++  + LVI DEQHRFGV QR KL+ K   P 
Sbjct: 351 QKDTVLEQIRNNEIDILIGTHALIEDKVEFNNIGLVITDEQHRFGVMQRSKLSLKGANPD 410

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KVVLSE 481
           +L+MTATPIPRTL L   GD+DIS I E P GR+PI+T+ I  ++ D     L +  +  
Sbjct: 411 ILVMTATPIPRTLALILYGDLDISIIDELPPGRQPIETIAIEKSKRDRAYNNLVRREVES 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           G++ Y +CP +EE +    +S VE    L  E+F    + ++HG+M   +K+ VM+ FKN
Sbjct: 471 GRQVYIVCPLVEESEAIEAKSAVELVEELRAEYFHDLRLGLLHGKMKSSEKDEVMERFKN 530

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L++TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG   S C+L+Y   
Sbjct: 531 KEIDILVSTTVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGSHKSYCVLIYDSK 590

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +     R+++++ T DGF I+E+DL+ R  GE  G +Q G+P+  +A    H  +L++A
Sbjct: 591 -TDVCRQRMAIMEETNDGFKISEKDLEIRGPGEFFGTRQHGLPELKVANLFKHIKILKLA 649

Query: 660 RKDAKHILTQDPDL 673
           +++A++IL +D +L
Sbjct: 650 QQEARYILGEDNNL 663


>gi|227355113|ref|ZP_03839524.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906]
 gi|227164900|gb|EEI49747.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906]
          Length = 695

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 247/653 (37%), Positives = 376/653 (57%), Gaps = 28/653 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   +  L+KI            DLL + P  + D+ +   IS++      T
Sbjct: 10  PLTTLHGVGASQADKLAKI------GLVTVEDLLLHLPLRYEDQTHLYAISDLLPGIPAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           ++G I + +     +R+     ++DG+G +TL FF   T  +KN   +G+++   G+IK+
Sbjct: 64  VSGEILR-TEVNFGRRKMMTCQISDGSGILTLRFF-NFTAAMKNNLAQGKQVIAYGEIKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
                 ++HP Y I     +V     +  +YS   GL     +K+I +AL+   +L    
Sbjct: 122 GSRGPEIIHPEYKIKVAGSEVKLQETLTPIYSTTEGLRQTSLRKLIEQALT---LLDTCA 178

Query: 190 EKDLLQKK---SFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
             +LL  +     P +A A   +HNP     F    +   PA++RL  +ELLA  + +L 
Sbjct: 179 INELLPDQFIYGLPPLATALRTLHNPPPDIAFAELEKGQHPAQKRLIIEELLAHNLGMLN 238

Query: 243 MRKQFKKEIGIPINVE--GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            R   +     P+ +     + ++ L  +PF+PT +Q+  + +I QD+ +   M+R++QG
Sbjct: 239 ARAGAQSYRAEPLLMPHGSTLREQFLATLPFTPTTAQQRVVNEIEQDLEKNYPMMRLIQG 298

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA ++   A+  G Q  +MAP  +LA+QH    +K+ +   I V  + G   
Sbjct: 299 DVGSGKTLVAALSALRAIANGKQVALMAPTELLAEQHALTFRKWFEPFGIQVGWLAGKQK 358

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R      IA+G+  IIIGTHA+FQ+ ++++ L LVI+DEQHRFGV QRL L +K   
Sbjct: 359 GKAREAQQNAIANGEVSIIIGTHAIFQEQVKFHSLALVIIDEQHRFGVHQRLALWKKGEE 418

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R +++IER++
Sbjct: 419 QGFHPHQLVMTATPIPRTLAMTAYADMDTSIIDELPPGRTPVTTVAIPDTRRNDIIERIR 478

Query: 477 VVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           V  SE  ++AYW+C  IE+ +    ++    ++ L        I ++HGRM   +K++VM
Sbjct: 479 VACSEENRQAYWVCTLIEDSEVLEAQAAQVIYDELTIALPEIKIGLVHGRMKPAEKQAVM 538

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK    +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S C+L
Sbjct: 539 ADFKENKLQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAMASHCVL 598

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           LY  PL++ +  RL VL+++ DGF+IA++DL+ R  GE+LG KQ+G  +F +A
Sbjct: 599 LYKTPLTQTARLRLQVLRDSNDGFVIAQKDLEIRGPGELLGTKQTGNAQFKVA 651


>gi|319786302|ref|YP_004145777.1| ATP-dependent DNA helicase RecG [Pseudoxanthomonas suwonensis 11-1]
 gi|317464814|gb|ADV26546.1| ATP-dependent DNA helicase RecG [Pseudoxanthomonas suwonensis 11-1]
          Length = 687

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/655 (37%), Positives = 367/655 (56%), Gaps = 26/655 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ-HSSFQLQKRRPY-KILLNDGTGE 100
           DL F  P  + DR     I+++       + G +      F   + RP  ++ + DG+  
Sbjct: 19  DLWFLLPLRYEDRTRLTAIADLRSGEPAQVEGTVEAVERGF---RYRPMLRVAVGDGSHR 75

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEA 158
             +L F+         F  G ++   G  +  ++ + +VHP Y +    +D      ++ 
Sbjct: 76  TVVLRFFHFRAAQVAQFRPGVRLRCFGTPRPGQHGLEIVHPSYRVLAADEDPALGESLDP 135

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
           VY    G+     +K+I +AL +LP     E +          P + E+  ++H P   +
Sbjct: 136 VYPSIEGVGPATLRKLIGQALEKLPPAEALELLPHGTPGLAGLPGLRESLLVLHRPAPGE 195

Query: 217 DFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
           D       T PA+ RLA +ELLA  + L   R   ++     ++  G++A+++   +PF+
Sbjct: 196 DLAALGAGTHPAQRRLALEELLAHHLGLRRQRLAQQQLRARALDGPGELARRLRAQLPFA 255

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T +Q+   + +  D+++ + M R++QGDVGSGKT+VA +A   AVE GGQ  + AP  +
Sbjct: 256 LTGAQQRVYQQVRADLARPSPMQRLVQGDVGSGKTVVAALAATLAVEQGGQVALAAPTEL 315

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QH   ++ + +   I V  + G +    R  AL  +A G A +++GTHAL Q+ + +
Sbjct: 316 LAEQHLANLRAWLEPLGIRVAWLAGKVTGKARAAALADVASGAAQVVVGTHALMQEGVAF 375

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKI 448
           + L+LVIVDEQHRFGVQQRL L  K  A    PH L+MTATPIPRTL +T+  D+D+S I
Sbjct: 376 HDLVLVIVDEQHRFGVQQRLALRDKGPAHGHVPHQLVMTATPIPRTLAMTAYADLDVSAI 435

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------F 500
            E P GR P++TV +  +R  E++ER++V  +EG++ YW+C  IEE +E           
Sbjct: 436 DELPPGRTPVQTVAVSADRRPELVERIRVACAEGRQVYWVCTLIEEAEEPGKGQGPGLQA 495

Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           ++    F  L        + ++HGRM    K++ M +FK+G   LL+ATTVIEVG+DV +
Sbjct: 496 QAAERTFEQLTAQLPGVRVGLVHGRMKASGKQAAMRAFKDGHTDLLVATTVIEVGVDVPN 555

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           AS++IIENAE  GLAQLHQLRGRVGRG   SSC+LLY PPLS  +  RL VL+ T DGF+
Sbjct: 556 ASLMIIENAERLGLAQLHQLRGRVGRGAAASSCVLLYQPPLSATARQRLDVLRRTGDGFV 615

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           IAEEDLK R  GE+LG +Q+G+  F IA       LL    + A  +LT  PD+ 
Sbjct: 616 IAEEDLKLRGPGELLGTRQTGLAAFRIADLARDADLLPKVHQLADRLLTSAPDVA 670


>gi|188578256|ref|YP_001915185.1| ATP-dependent DNA helicase RecG [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188522708|gb|ACD60653.1| ATP-dependent DNA helicase RecG [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 717

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 258/708 (36%), Positives = 388/708 (54%), Gaps = 52/708 (7%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           PS      APLS+  GVG K +  F ++ I           DL  + P  + DR     I
Sbjct: 9   PSLAVAGQAPLSSLPGVGPKVADKFAARGI-------LSVQDLWLHLPLRYEDRTRLTTI 61

Query: 62  SEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118
           +++       I G +      F+    RP  ++ ++D + G + L FF+ +   +   F 
Sbjct: 62  AQLQSGVPAQIEGRVDAVERGFRF---RPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FA 117

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176
            G ++ V G  K  +N   +VHP Y +    +D      ++ VY +  G+     +K+I 
Sbjct: 118 VGTRVRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177

Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225
           +AL RLP       + P W     LQ +  PS+  A  I+H P    D         PA+
Sbjct: 178 QALERLPPEAALELLPPHW-----LQDEQLPSLRAALLIMHRPPVGTDPQQLLAGGHPAQ 232

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +RLA +ELLA Q++L   R   ++     +   G + Q++ R +PF  T +Q+   + I 
Sbjct: 233 QRLAIEELLAHQLSLRRQRIALQRFHAPSLPGNGTLVQQLRRALPFQLTGAQQRVFEQIA 292

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
           +D++Q   MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + 
Sbjct: 293 RDLAQSWPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRDWL 352

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +   I +  + G +    R  A+  +A GQA +++GTHAL Q+++ ++ L L I+DEQHR
Sbjct: 353 EPLGIRIVWLAGKVTGKARAAAMADVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHR 412

Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           FGV QRL L  K  A    PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+
Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTI 472

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------------FRSVVERF 507
           ++   R  E++ER++   +EG++AYW+C  IEE +E                 ++    F
Sbjct: 473 VLSAERRPELVERIRAACAEGRQAYWVCTLIEESEEPEKGARGQHGGPPRIEAQAAEVTF 532

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +L        +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIE
Sbjct: 533 EALSAQLPGVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIE 592

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           NAE  GLAQLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+
Sbjct: 593 NAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLE 652

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            R  GE+LG +Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 653 LRGPGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLEEVPEIA 700


>gi|192362473|ref|YP_001983944.1| ATP-dependent DNA helicase RecG [Cellvibrio japonicus Ueda107]
 gi|190688638|gb|ACE86316.1| ATP-dependent DNA helicase RecG [Cellvibrio japonicus Ueda107]
          Length = 712

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 246/616 (39%), Positives = 363/616 (58%), Gaps = 29/616 (4%)

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
           L KRR     + DGTG +TL F++      K     G ++ V G+ ++    + M HP Y
Sbjct: 88  LGKRRSLVCRVQDGTGTLTLRFYHFNNAQ-KQRLVAGARLRVFGETRRGAAGLEMYHPEY 146

Query: 144 IFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL------PVLPEWIEKDLL 194
            F        PL   +  +Y    GL+    + +  +AL+ L       +LPE + + L 
Sbjct: 147 DFLAGAS-PLPLEQTLTPIYPATEGLTQPRLRSLAQQALTWLDKHPLRELLPETVRRRLN 205

Query: 195 QKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           Q     ++A+A   +H P    +     E   P ++RLA++ELLA  ++LLL+R++ + +
Sbjct: 206 QC----TLADALRYLHQPPVGANVQQLLEGEHPYQQRLAFEELLAHHLSLLLLRRETQAD 261

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
               + +   +    L+ + F  T++Q+  + +I +D+++   MLR++QGDVGSGKT+VA
Sbjct: 262 GAPRLRLTPALEHGFLKQLGFQLTRAQQRVVAEIAEDLAKPLPMLRLVQGDVGSGKTVVA 321

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +A  AAV +G QA +MAP  ILA+QH     K+ +   I V  +TG +    RR  LE 
Sbjct: 322 ALAALAAVASGKQAAVMAPTEILAEQHRLNFGKWLEPLGIQVGWLTGRLKSGERRYQLEM 381

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------P 421
           IA G A +++GTHALFQD++ +  L LVI+DEQHRFGV QRL L++K            P
Sbjct: 382 IAAGTAQVVVGTHALFQDAVAFADLGLVIIDEQHRFGVHQRLSLSEKGQVDGALAGVVRP 441

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +++  D+D S I E P GR P+ TV+I  NR +EVIER+++   +
Sbjct: 442 HQLIMTATPIPRTLAMSAYADLDCSVIDELPPGRTPVTTVVISDNRREEVIERVRLACEQ 501

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+C  IEE +    ++     +SL +      I ++HGR+   +KESVM  FK G
Sbjct: 502 GRQAYWVCTLIEESEALEAQAAQATADSLAQSLPQLRIGLVHGRLKLAEKESVMAGFKAG 561

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY  PL
Sbjct: 562 ELDLLVATTVIEVGVDVANASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYGSPL 621

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S NS  RL V++ + DGF IAE+DL  R  GE+LG +Q+G  +F IA  +    LL   +
Sbjct: 622 SNNSRERLRVMRESSDGFYIAEQDLLLRGPGEVLGTRQTGDMQFKIADLQRDSHLLPDVK 681

Query: 661 KDAKHILTQDPDLTSV 676
             A  ++++ P ++ +
Sbjct: 682 NAALLLMSEHPQVSQL 697


>gi|302879848|ref|YP_003848412.1| ATP-dependent DNA helicase RecG [Gallionella capsiferriformans
           ES-2]
 gi|302582637|gb|ADL56648.1| ATP-dependent DNA helicase RecG [Gallionella capsiferriformans
           ES-2]
          Length = 685

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 244/648 (37%), Positives = 368/648 (56%), Gaps = 24/648 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL + P  + D      ++++     V + G I+ H+    + R+     L D   E+ 
Sbjct: 25  DLLLHLPLRYEDETELVSLADVEPGETVQVQGVIT-HNEVLYKPRKILVCRLQDKEDELY 83

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
           L F       +K +   GR++   G+ +     + MVHP     + +      +  VY  
Sbjct: 84  LRFLNFYPSQIK-LLAVGRQVRAIGEARIGYFGLEMVHPKCRAVSDKTQLATSLTPVYPT 142

Query: 163 PTGLSVDLFKKIIVEALSRL-PV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPR----KA 215
             GLS    KK+I  AL  L P   LPE    +L    + P   ++  ++HNP       
Sbjct: 143 TAGLSQLTLKKLIANALEVLNPADPLPEKFRHNL----NLPGFFDSIRLLHNPTTDIAAC 198

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
              + +  A  R+ +DELLA Q+++ +  K+  + I   +  +G     +L+ +PFS TK
Sbjct: 199 TLADKSHAAWRRIKFDELLAQQLSMRVHHKERSRRIAPALPPQGHYTDSLLKILPFSLTK 258

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q+    +I  D+++ + M R+L GDVGSGKT+VA +A   A+E G Q  +MAP  ILA+
Sbjct: 259 AQQKVYAEISADLARPHPMQRLLLGDVGSGKTIVAALAALQAIENGYQVALMAPTEILAE 318

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY  + ++     I+   ++G++ +  +R A E IA G+  + IGTHALFQ+ I ++KL
Sbjct: 319 QHYLKLTEWLSPLGIVPVWLSGSLKKKDKRVAAELIASGETWLAIGTHALFQEQITFHKL 378

Query: 396 ILVIVDEQHRFGVQQRLKL----------TQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            L IVDEQH+FGVQQRL L           +K++ PH L+M+ATPIPRTL ++   D+D+
Sbjct: 379 GLAIVDEQHKFGVQQRLALHAKGKQPVAPDEKSSEPHQLMMSATPIPRTLAMSYYADLDV 438

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I E P GR P+ T ++   R +EV ER++     G +AYW+CP I+E +    ++  E
Sbjct: 439 SVIDELPPGRTPVITKLVSDTRREEVFERVRAACMTGAQAYWVCPLIDESEVLQLQNAQE 498

Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            F  L + F    + ++HG+M   +K   M +FK G  +LL+ATTVIEVG+DV +AS+++
Sbjct: 499 TFELLTDTFPDLRVGLVHGKMESAEKVRTMSAFKAGELQLLVATTVIEVGVDVPNASLMV 558

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I++AE  GLAQLHQLRGRVGRG   S CILLYH PLS+ + TRL V+    DGF+IA++D
Sbjct: 559 IDHAERMGLAQLHQLRGRVGRGSAQSLCILLYHKPLSELARTRLKVIFENTDGFVIAQQD 618

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           L+ R  GE+LG +QSG+     A  E  + LLE AR+ A  +L+  PD
Sbjct: 619 LQLRGPGELLGARQSGVAMLRFADIEADEDLLEHAREVADELLSDYPD 666


>gi|50118999|ref|YP_048166.1| ATP-dependent DNA helicase RecG [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609525|emb|CAG72958.1| putative ATP-dependent DNA helicase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 693

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 255/692 (36%), Positives = 388/692 (56%), Gaps = 38/692 (5%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   LN    PLST  GVG   +  L+++       ET   DLL + P  + DR +   
Sbjct: 1   MKGRLLN--TQPLSTLAGVGASQAAKLARL-----GLET-VQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      T+ G I + +      RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGDLLPGMYATVEGEILR-NDITFGSRRMLTCQISDGSGLLTMRFFNFSAAM-KNSLAPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++T  G+IK+ K    ++HP Y +  +S  V     +  VY    G+     +K+  +A
Sbjct: 111 QRVTAYGEIKRGKIGAEIIHPEYRVQGDSTQVELQESLTPVYPSTEGIRQATLRKLTDQA 170

Query: 179 LSRLP------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARE 226
           L  L       +LPE + + L+      S+ +A   +H P    D + +       PA++
Sbjct: 171 LELLAANHIDELLPESLSRSLI------SLPDALRTLHRP--PPDMQLSELEHGKHPAQQ 222

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286
           RL  +ELLA  +++L +R   ++    P+  +  + Q++L  +PF+PT++QE  + +I  
Sbjct: 223 RLIMEELLAHNLSMLAVRAGEQRHKASPLPTKDSLKQQLLAALPFTPTQAQERVVAEIET 282

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           DM +   M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +
Sbjct: 283 DMKKDFPMMRLVQGDVGSGKTLVAALAALRAIANGKQVALMAPTELLAEQHVHNFRQWFE 342

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              + V  + G      R+   + IA GQ  +++GTHA+FQ  +++  L LVI+DEQHRF
Sbjct: 343 PLGLEVGWLAGKQKGKARQAQQDAIASGQVSMVVGTHAIFQQQVKFNGLALVIIDEQHRF 402

Query: 407 GVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           GV QRL L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV 
Sbjct: 403 GVHQRLALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVA 462

Query: 463 IPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520
           IP +R  ++IER+      EG++AYW+C  IEE      ++       L     +  + +
Sbjct: 463 IPDSRRSDIIERVNSACQQEGRQAYWVCTLIEESDLLEAQAAEATSEELKAALPNLKVGL 522

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGRM   +K +VM +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLR
Sbjct: 523 VHGRMKAQEKLAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLR 582

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG   S C+LLY  P+SK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G
Sbjct: 583 GRVGRGAVASHCVLLYKTPMSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTG 642

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
             +F +A       L+    + A+H+    P+
Sbjct: 643 NAEFKVADLLRDRDLIPQVHRVARHLHEHYPE 674


>gi|67924795|ref|ZP_00518195.1| ATP-dependent DNA helicase RecG [Crocosphaera watsonii WH 8501]
 gi|67853363|gb|EAM48722.1| ATP-dependent DNA helicase RecG [Crocosphaera watsonii WH 8501]
          Length = 821

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/651 (36%), Positives = 382/651 (58%), Gaps = 25/651 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99
           DLLFY+P   ID   +  I  +     VTI G + + + F   K +    ++++L D TG
Sbjct: 152 DLLFYYPRDHIDYARQVSICHLVAGETVTIVGTVKRCNCFTSPKNKKLSIFELILKDNTG 211

Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS--- 148
           +I L  F+           E  K  +  G  +  +G +K+ +  + + +P     +S   
Sbjct: 212 QIKLNRFFAGARFTNRGWQERQKRFYPVGAVVAASGLVKQNRYGVTLENPEIEVLDSLGS 271

Query: 149 --QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
               +    +  VY L  G+  DL +K I+ +L  +  + + + + L ++     + EA 
Sbjct: 272 SIDSLKIGRVFPVYPLTEGVGADLIRKAIIASLEAIKQIRDPLPRILREEYGLIGLKEAI 331

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI--GIPINVEGKIAQK 264
           N IH P      E  + AR RL +DE    Q+  L  R+Q +K+I        +GK+ ++
Sbjct: 332 NNIHFPESP---ELLAHARRRLVFDEFFYLQLGFL-QRRQEQKQIHNSAVFTPQGKLIEQ 387

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
             + +PFS T +Q+  I +IL+D++    M R++QGDVG+GKT+VA+ A+ AA+++  QA
Sbjct: 388 FNQILPFSLTNAQQQVINEILEDLNSVTPMNRLVQGDVGAGKTIVAVFAILAALQSSYQA 447

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  +LA+QHY  +  +     + VE++TG+  +A R +   ++  G+  +++GTHA
Sbjct: 448 ALMAPTEVLAEQHYRKLVPWFNQLYLPVELLTGSTKKAKREEIHRQLITGELPLLVGTHA 507

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L QD + + KL LV++DEQHRFGVQQR KL  K  +PHVL MTATPIPRTL LT  GD+D
Sbjct: 508 LIQDPVNFQKLGLVVIDEQHRFGVQQRAKLLAKGKSPHVLTMTATPIPRTLALTLHGDLD 567

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           +S+I E P GR+ I+T  +      +  + ++  +++G++ Y I P IEE ++ + ++ V
Sbjct: 568 VSQIDELPPGRQAIQTTALTGKERTQAYDLIRREVAQGRQVYIIFPMIEESEKLDVKAAV 627

Query: 505 ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           E    L E      +I ++HGRMS  +K+ V+ +F++   +++++TTVIEVG+DV +A++
Sbjct: 628 EEHEKLSEKVFPDFNIGLLHGRMSSAEKDEVLTAFRDNEYQIIVSTTVIEVGVDVPNATV 687

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++IENAE FGL+QLHQLRGRVGRG   S C+L+     + ++  RLSVL+ ++DGF I+E
Sbjct: 688 MLIENAERFGLSQLHQLRGRVGRGSHKSYCLLMSSSK-TPDAKQRLSVLEQSQDGFFISE 746

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            DL+ R  G +LG +QSG+P F +A       +LE+AR  A+ I+  D +L
Sbjct: 747 MDLRFRGPGTVLGTRQSGLPDFALASLVEDQEVLELARLAAEKIIVADKNL 797


>gi|322419244|ref|YP_004198467.1| ATP-dependent DNA helicase RecG [Geobacter sp. M18]
 gi|320125631|gb|ADW13191.1| ATP-dependent DNA helicase RecG [Geobacter sp. M18]
          Length = 769

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/694 (36%), Positives = 396/694 (57%), Gaps = 44/694 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI-- 64
           L  P++  +GVG K +  L+K  I+   +A        L+  P+ + DR    +I+E+  
Sbjct: 69  LKTPMTAIKGVGPKLADLLAKKGIVTVEDA--------LYLLPNRYEDRRQLKRIAELRP 120

Query: 65  --SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
             SE    T+   +S  +      RR ++ ++ D TG + L +F+   + LK  F  GR+
Sbjct: 121 GNSEAFFATV---VSAEALTTKGGRRYFEAIVKDETGSLPLKWFHFHPQFLKKQFTPGRR 177

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFH-NSQDV---------NFPLIEAVYSLPTGLSVDLFK 172
               G + +   +  M HP   +    +D+         NF  I  VY L  G+S  + +
Sbjct: 178 GIFIGDVSQFGFQREMHHPEVEWAAEGEDLEQVMARDPDNFGRILPVYPLTEGVSQKVMR 237

Query: 173 KIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARER 227
           +I+ + + R    L   + ++LL++    S+  A    H P  +          S A   
Sbjct: 238 RIMRDTVQRYSRYLKGSLPEELLRRHRLSSLPVAMREAHQPDPSGSIADLNNGRSEAHRS 297

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           LA+DEL   Q+ L + ++    E GI   V  +  +++L+ +PFS T +Q+  + +I +D
Sbjct: 298 LAFDELFFLQLGLAMKKRGIALEDGISFKVTHRYTKELLKLLPFSLTGAQKRVLSEIKED 357

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           M   + M R++QGDVG GKTLVAL+A    VE   Q  IMAP  +L++QHY  I  Y + 
Sbjct: 358 MIAPHPMHRLVQGDVGCGKTLVALMAALICVENDYQVAIMAPTELLSEQHYLNIHGYCER 417

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             I V ++T ++    +   LE+IA GQ  +++GTHA+ Q+ +++++L L I+DEQHRFG
Sbjct: 418 LGISVALLTASV--KGKSDTLEKIASGQTRVVVGTHAVIQEKVEFHRLGLGIIDEQHRFG 475

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           V QR  L +K + P +L+MTATPIPRTL +T  GD+ +S I E P GR PI+T ++  +R
Sbjct: 476 VVQRALLKKKGSNPDILVMTATPIPRTLSMTVFGDLSLSVIDELPPGRTPIETRMVRESR 535

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------AII 521
             EV   ++  + +G++AY I P +EE ++ + ++ V+    + EH    +      A++
Sbjct: 536 RLEVYSLVREEVQKGRQAYVIYPLVEESEKIDLKAAVQ----MAEHLARDVFPDLRLAVL 591

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HGRMS  +KE+VM SFK G   +L+ATTVIEVGIDV +A+++++E+AE FGL+QLHQLRG
Sbjct: 592 HGRMSAAEKEAVMKSFKAGETDILVATTVIEVGIDVPNATVMVVEHAERFGLSQLHQLRG 651

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           RVGRG E S CILL    LS++   RL V+  + DGF+IAE DL+ R  G+ LG +Q+G+
Sbjct: 652 RVGRGCERSRCILLAGDKLSEDGQKRLEVMVKSSDGFVIAEADLQIRGPGDFLGTRQAGL 711

Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           P+  +A       +LE ARK+A  ++ +DP+L +
Sbjct: 712 PELRVADILRDGGVLEQARKEAFALVERDPELVT 745


>gi|304413237|ref|ZP_07394710.1| ATP-dependent DNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304284080|gb|EFL92473.1| ATP-dependent DNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 697

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 263/681 (38%), Positives = 388/681 (56%), Gaps = 32/681 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG   +  L+KI       ET   DLL + P  + DR +   I+++      T
Sbjct: 10  PLSSLTGVGASQAAKLTKI-----GLET-VQDLLLHLPLRYEDRTHLYHITDLLPGLTAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I   S     +R      L+DG+G + L FF   T M KN    G+ I   G++K+
Sbjct: 64  IAGKILS-SEISSGRRAMLTSRLDDGSGVVILRFFNFNTSM-KNSLSAGKHIVAYGEVKQ 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
            +N + ++HP Y  ++ +D    L   +  +Y+   GL     + +I +AL+   +L  +
Sbjct: 122 GRNGLEIIHPEYRTYD-EDKGIRLQYSLTPIYTSTEGLRQSTLRNLINQALN---LLDTF 177

Query: 189 IEKDLLQKK---SFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALL 241
              +LL  +   SF S++ A + +H P       D E    PA+ RL  +EL+A  +++L
Sbjct: 178 TVAELLPVEVCDSFVSLSTAIHTLHRPSADISLIDLEKGQHPAQRRLILEELVAHNLSML 237

Query: 242 LMR---KQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
             R   K ++ +   P  V    +  + L  + F PT +Q+  + +I QD+ +   M+R+
Sbjct: 238 AARAGTKDYQAQPLPPSTVSHDTLKARFLAALAFHPTHAQQRVVDEIEQDLLRTFPMMRL 297

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH E  +++ +   I V  + G
Sbjct: 298 IQGDVGSGKTLVAALAALRAIAQGKQVALMAPTELLAEQHLETFRQWFEPLSISVGWLAG 357

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 R    E +A GQ  +++GTHA+FQ  +++ KL LVI+DEQHRFGV QRL L +K
Sbjct: 358 KQKGKIRLIQQEAVAKGQVSMVVGTHAIFQQQVRFSKLALVIIDEQHRFGVHQRLALWEK 417

Query: 418 ATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  PH L+MTATPIPRTL +T+  D+DIS I E P GR PI TV IP  R D+VI+
Sbjct: 418 GKQQGFHPHQLIMTATPIPRTLAMTAYADLDISIIDELPPGRTPISTVAIPDTRRDDVIQ 477

Query: 474 RLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531
           R+K   L EG++ YW+C  IEE +    ++    +  L        + +IHGRM+  +K+
Sbjct: 478 RIKHACLEEGRQVYWVCTLIEESELLEAQAAAVTYAELQATLVDVKLGLIHGRMTAQEKQ 537

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           +VM  FK G  +LLIATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S 
Sbjct: 538 AVMQVFKQGELQLLIATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGSTASH 597

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C+LLY  PL+K    RL VL+ + DGF+IA+ DL+ R  GE+LG +Q+G  +F IA    
Sbjct: 598 CVLLYKTPLTKTVQMRLQVLRESNDGFVIAQRDLEIRGPGELLGTRQTGGTEFKIADLLR 657

Query: 652 HDSLLEIARKDAKHILTQDPD 672
             ++L   ++ A+H+  + P+
Sbjct: 658 DQNILPEVQRIARHLHQKYPE 678


>gi|84622705|ref|YP_450077.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84366645|dbj|BAE67803.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 717

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 257/708 (36%), Positives = 388/708 (54%), Gaps = 52/708 (7%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           PS      APLS+  GVG K +  F ++ I           DL  + P  + DR     I
Sbjct: 9   PSLAVAGQAPLSSLPGVGPKVADKFAARGI-------LSVQDLWLHLPLRYEDRTRLTTI 61

Query: 62  SEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118
           +++       I G +      F+    RP  ++ ++D + G + L FF+ +   +   F 
Sbjct: 62  AQLQSGVPAQIEGRVDAVERGFRF---RPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FA 117

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176
            G ++ V G  K  +N   +VHP Y +    +D      ++ VY +  G+     +K+I 
Sbjct: 118 VGTRVRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177

Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225
           +AL RLP       + P W     LQ +  PS+  A   +H P    D         PA+
Sbjct: 178 QALERLPPEAALELLPPHW-----LQDEQLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQ 232

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +RLA +ELLA Q++L   R   ++     +   G + Q++ R +PF  T +Q+   + I 
Sbjct: 233 QRLAIEELLAHQLSLRRQRIALQRFHAPSLPGNGTLVQQLRRALPFQLTGAQQRVFEQIA 292

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
           +D++Q   MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + 
Sbjct: 293 RDLAQSWPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRDWL 352

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +   I +  + G +    R  A+  +A GQA +++GTHAL Q+++ ++ L L I+DEQHR
Sbjct: 353 EPLGIRIVWLAGKVTGKARAAAMADVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHR 412

Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           FGV QRL L  K  A    PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+
Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTI 472

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------------FRSVVERF 507
           ++   R  E++ER++   +EG++AYW+C  IEE +E                 ++    F
Sbjct: 473 VLSAERRPELVERIRAACAEGRQAYWVCTLIEESEEPEKGARGQHGGPPRIEAQAAEVTF 532

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +L        +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIE
Sbjct: 533 EALSAQLPGVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIE 592

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           NAE  GLAQLHQLRGRVGRG + SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+
Sbjct: 593 NAERLGLAQLHQLRGRVGRGADASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLE 652

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            R  GE+LG +Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 653 LRGPGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLEEVPEIA 700


>gi|254976149|ref|ZP_05272621.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-66c26]
 gi|255093539|ref|ZP_05323017.1| ATP-dependent DNA helicase RecG [Clostridium difficile CIP 107932]
 gi|255315282|ref|ZP_05356865.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-76w55]
 gi|255517950|ref|ZP_05385626.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-97b34]
 gi|255651066|ref|ZP_05397968.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-37x79]
 gi|306520922|ref|ZP_07407269.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-32g58]
          Length = 685

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 244/636 (38%), Positives = 376/636 (59%), Gaps = 12/636 (1%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEI 101
           DLL+Y P  F DR+   KI+++ +   VTI   IS  ++F  ++     KI + D TG  
Sbjct: 31  DLLYYFPRQFEDRNNLKKIAQLEDGEKVTIKAVISSINTFSPKEGMTLTKIDVKDETGSA 90

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            L+FF +    +KN F  G  I V GK+KK  N + +      +  +   N      VY 
Sbjct: 91  KLVFFNKS--YIKNTFRPGDSILVFGKVKKKFNNLELTSCELEYLTNSPKNTCRFMPVYQ 148

Query: 162 LPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
           L  G++      II   L  +  ++ E++ + +++K    SI  A   IH+P   +  + 
Sbjct: 149 LTYGVTNKEIMSIIRTVLEDKELIIQEYMPQRIIEKYRLCSIDFAVRNIHSPSSKESLKI 208

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
              A  R+ ++ELL  Q+ L + +    KE GI      K  +KI+  +PF  TK+Q  A
Sbjct: 209 ---ALYRIVFEELLILQLGLFVFKSGRNKEDGIKFET-SKDLKKIISALPFKLTKAQNRA 264

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           + +I+QDM+ +  M R++QGDVGSGKT+VAL+A+A  V  G Q  +MAP  ILA QHY  
Sbjct: 265 LDEIIQDMNLEKIMNRLVQGDVGSGKTVVALLALANCVLNGYQGALMAPTEILAGQHYIS 324

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           + +  ++  I V ++ G++ +  +   LE+I + +  I+IGTHAL +D +++  + LVI 
Sbjct: 325 LTESLKDFGINVGLLIGSLTKKQKDTVLEQIRNNEIDILIGTHALIEDKVEFNNIGLVIT 384

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQHRFGV QR KL+ K   P +L+MTATPIPRTL L   GD+DIS I E P GR+PI+T
Sbjct: 385 DEQHRFGVMQRSKLSLKGANPDILVMTATPIPRTLALILYGDLDISIIDELPPGRQPIET 444

Query: 461 VIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-S 517
           + I  ++ D     L +  +  G++ Y +CP +EE +    +S VE    L  E+F    
Sbjct: 445 IAIEKSKRDRAYNNLVRREVESGRQVYIVCPLVEESEAIEAKSAVELVEELRAEYFHDLR 504

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + ++HG+M   +K+ VM+ FKN    +L++TTVIEVG++V +A+++IIENAE FGLAQLH
Sbjct: 505 LGLLHGKMKSSEKDEVMERFKNKEIDILVSTTVIEVGVNVPNATLMIIENAERFGLAQLH 564

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG   S C+L+Y    +     R+++++ T DGF I+E+DL+ R  GE  G +
Sbjct: 565 QLRGRVGRGSHKSYCVLIYDSK-TDVCRQRMAIMEETNDGFKISEKDLEIRGPGEFFGTR 623

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           Q G+P+  +A    H  +L++A+++A++IL +D +L
Sbjct: 624 QHGLPELKVANLFKHIKILKLAQQEARYILGEDNNL 659


>gi|296100479|ref|YP_003610625.1| ATP-dependent DNA helicase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295054938|gb|ADF59676.1| ATP-dependent DNA helicase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 693

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/677 (37%), Positives = 377/677 (55%), Gaps = 28/677 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L KI            DLL + P  + DR    KI ++      T
Sbjct: 10  PLNSLTGVGAAQSSKLGKI------GLHTVQDLLLHLPLRYEDRTQLYKIGDLLPAIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DGTG +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGIKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 TELLAPELAQ--GMMSLPEALRTLHRPPPTLQLSDLESGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   +     P++   ++  K+L ++PF PT +Q     +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQHFHAQPLSPRDELKDKLLASLPFKPTGAQARVTAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRAWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    + IA G+  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQDAIARGEVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGLQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477

Query: 478 VLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             + EG++AYW+C  IEE      ++    +  L        + ++HGRM   +K++VM 
Sbjct: 478 ACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELKVGLVHGRMKPAEKQAVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 SFKQGELHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKAPLSKTAQMRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHILTQDPD 672
           +   ++ A+HI  + P+
Sbjct: 658 IPEVQRLARHIHERYPE 674


>gi|163750716|ref|ZP_02157952.1| ATP-dependent DNA helicase RecG [Shewanella benthica KT99]
 gi|161329560|gb|EDQ00552.1| ATP-dependent DNA helicase RecG [Shewanella benthica KT99]
          Length = 691

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 264/699 (37%), Positives = 394/699 (56%), Gaps = 28/699 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GV KK +  L+K+            DLLF+ P  + DR     I+ +     
Sbjct: 6   LVPITDLKGVAKKMAERLAKL------GIHTIQDLLFHLPLRYEDRTQIYPIASLYPGTY 59

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            TI   I Q S     ++R     + D TG +TL FF       KN    G  I   G+I
Sbjct: 60  GTIEAVI-QSSQIIQGRKRMMTCTVRDDTGYLTLRFFNFSVAQ-KNGLVNGMTIRAYGEI 117

Query: 130 KKLKNRIIMVHPHY-IFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           ++ K++  ++HP Y + H   D V    +  VY    GL    + K+  +AL+   +L E
Sbjct: 118 RRGKHQAEIIHPEYKLIHGDTDLVMSDTLTPVYPTTEGLKQASWIKLTDQALA---MLDE 174

Query: 188 WIEKDLLQKKSFP---SIAEAFNIIHNPR-KAKDFEWTS---PARERLAYDELLAGQIAL 240
              ++LL  +  P   S+  A  ++H P  +   F+      PA++RL  +ELLA  +++
Sbjct: 175 GGLQELLPPQLQPNNLSLNAALQLLHRPNNQVSQFDLEQGHHPAQQRLIQEELLAHNLSM 234

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +R++  ++  + +   GK+ +  L+ +PF PT +Q+    +I  D+ + + M+R++QG
Sbjct: 235 LKLRQRSNRDHAVSLAATGKLLKPFLKALPFKPTGAQQRVGVEICGDLEKSSPMMRLVQG 294

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH E    + +   + V  + G + 
Sbjct: 295 DVGSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAENFALWFEPLGLKVGWLAGKLK 354

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R ++L+ I  G A+IIIGTHA+FQ+ + +  L L+I+DEQHRFGV QRL L +K   
Sbjct: 355 GKARAQSLQDIESGAANIIIGTHAIFQEQVVFNNLALIIIDEQHRFGVHQRLSLREKGIK 414

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV +   R +EVIER++
Sbjct: 415 QGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAVADIRRNEVIERVR 474

Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
                +G++ YW+C  IEE +    ++  +    L        I +IHGRM   +K+++M
Sbjct: 475 HAATYDGRQTYWVCTLIEESEVLECQAAEDTAAELTLALPELKIGLIHGRMKSAEKKAIM 534

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L
Sbjct: 535 AEFKSGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVL 594

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +Y  PLS  +  RL VL+++ DGF+IA++DL+ R  GE+LG KQ+G+    IA      +
Sbjct: 595 MYKAPLSPTATKRLGVLRSSNDGFIIAQKDLEIRGPGEVLGTKQTGIADMKIADLVRDQA 654

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           L+   +K A HI+ Q PD  +V G   R L    QY +A
Sbjct: 655 LIPHIQKLAVHIMEQVPD--NVDGIVQRWLGDREQYVQA 691


>gi|325927901|ref|ZP_08189125.1| ATP-dependent DNA helicase RecG [Xanthomonas perforans 91-118]
 gi|325541741|gb|EGD13259.1| ATP-dependent DNA helicase RecG [Xanthomonas perforans 91-118]
          Length = 717

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 253/708 (35%), Positives = 385/708 (54%), Gaps = 52/708 (7%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           PS      A LS+  GVG K +  F ++ I           DL  + P  + DR     I
Sbjct: 9   PSLAVAGQARLSSLPGVGPKVADKFAARGI-------LSVQDLWLHLPLRYEDRTRLTTI 61

Query: 62  SEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118
           +++       + G +      F+    RP  ++ ++D + G + L FF+ +   +   F 
Sbjct: 62  AQLQGGVPAQVEGRVEAVERGFRF---RPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FA 117

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176
            G ++ V G  K  ++   +VHP Y +    +D      ++ VY +  G+     +K+I 
Sbjct: 118 VGTRLRVFGTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177

Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225
           +AL RLP       + P W     LQ +  PS+  A   +H P    D         PA+
Sbjct: 178 QALERLPPESALELLPPHW-----LQDERLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQ 232

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +RLA +ELLA Q++L   R   ++     +   G + Q++ + +PF  T +Q+   + I 
Sbjct: 233 QRLAIEELLAHQLSLRRQRIALQRLHAPSLPGNGTLVQQLCKALPFQLTGAQQRVFEQIA 292

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D++Q + MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + 
Sbjct: 293 HDLAQPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLTNLRGWL 352

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +   I +  + G +    R   +  +A GQA +++GTHAL Q+++ ++ L L IVDEQHR
Sbjct: 353 EPLGIRIVWLAGKVTGKARAAVMAEVASGQAQVVVGTHALMQEAVIFHDLALAIVDEQHR 412

Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           FGV QRL L  K  A    PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+
Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSAYADLDVSAIDELPPGRTPVQTI 472

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------------FRSVVERF 507
           ++   R  E++ER++   +EG++AYW+C  IEE +E                 ++    F
Sbjct: 473 VLSAERRPELVERIRAACAEGRQAYWVCTLIEESEEPEKGAQGQQGGPPRIEAQAAEVTF 532

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +L        +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIE
Sbjct: 533 EALSAQLPGVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIE 592

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           NAE  GLAQLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+
Sbjct: 593 NAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLE 652

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            R  GE+LG +Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 653 LRGPGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLDEAPEVA 700


>gi|282898565|ref|ZP_06306553.1| ATP-dependent DNA helicase RecG [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196433|gb|EFA71342.1| ATP-dependent DNA helicase RecG [Cylindrospermopsis raciborskii
           CS-505]
          Length = 827

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/650 (35%), Positives = 385/650 (59%), Gaps = 23/650 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99
           DLLFY+P  +ID   +  I E+     VTI G + + + F   K +   IL   L D TG
Sbjct: 158 DLLFYYPRDYIDYARQVNIRELKGGETVTIIGEVRRCNCFTSPKNQKLSILELMLKDQTG 217

Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD 150
           ++ +  FY  +        E LK  +  G  +   G +K  +  + + +P   +  NS D
Sbjct: 218 QVKVSRFYAGSRFSSKGWQEGLKRRYTPGTLVAACGLVKPSRYGLTLDNPEIEVLANSGD 277

Query: 151 V--NFPL--IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
              +F +  +  +YSL  G+  +  ++ ++  L     L + +   L +K +   + +A 
Sbjct: 278 AIDSFTIGRVVPIYSLTEGVVANTVRQAVMAVLPSAKSLQDPLPPGLRKKYNLIELKQAI 337

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKI 265
             IH P   +D +    AR RL +DE    Q+ LL  +KQ K  + G  +   GK+  + 
Sbjct: 338 PNIHFP---QDSDTLKMARRRLVFDEFFYLQVGLLQRQKQAKANQTGAILAPSGKLLDQF 394

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF  T +Q+  I DIL D+ +   M R++QGDVGSGKT+VA++A+  A+++G QA 
Sbjct: 395 HEILPFKFTNAQQRVINDILNDLQKPTPMNRLVQGDVGSGKTVVAVVAILTAIQSGYQAA 454

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  +LA+QHY  +  +     + VE++TG+   + RR+   ++  G+  +++GTHAL
Sbjct: 455 LMAPTEVLAEQHYRKLVTWFNLLHLPVELLTGSTKTSKRREIHSQLETGELPLLVGTHAL 514

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            QD +++++L LV++DEQHRFGV+QR KL QK   PHVL MTATPIPRTL LT  GD+D+
Sbjct: 515 IQDKVKFHRLGLVVIDEQHRFGVEQRAKLQQKGEQPHVLTMTATPIPRTLALTVHGDLDV 574

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S+I E P GR+ IKT ++  ++  +  + ++  +++G++ Y + P +EE ++ + RS ++
Sbjct: 575 SQIDELPPGRQQIKTSLLTSHQRPQAYDLIRREIAQGRQVYVVLPLVEESEKLDLRSAID 634

Query: 506 RFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +  L E    T  + ++HG+M+  +KE  ++ F++   ++L++TTV+EVG+DV +A+++
Sbjct: 635 EYQKLQETVFPTFQVGLLHGKMTSAEKEEAINKFRDNQTQILVSTTVVEVGVDVPNATVM 694

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +IE+AE FGL+QLHQLRGRVGRG   S C+L+     + ++  RL VL+ ++DGF I+E 
Sbjct: 695 LIEHAERFGLSQLHQLRGRVGRGMAQSYCLLM-SSSRNPDAQQRLKVLEQSQDGFFISEM 753

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           D++ R  GE++G +QSG+  F +A     + +L +AR+ A+ ++  D  L
Sbjct: 754 DMRFRGPGEVMGTRQSGVADFTLASLVEDEEVLLLARQAAEKVIDMDVSL 803


>gi|188990343|ref|YP_001902353.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732103|emb|CAP50295.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris]
          Length = 713

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 256/705 (36%), Positives = 388/705 (55%), Gaps = 50/705 (7%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           PS      APLS+  GVG K +  F ++ I           DL  + P  + DR     I
Sbjct: 9   PSLAVAGQAPLSSLPGVGPKVAEKFAARGI-------LSLQDLWLHLPLRYEDRTRLTTI 61

Query: 62  SEISEERIVTITGYI-SQHSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118
           +++       I G + +    F+    RP  ++ ++D + G + L FF+ +   +   F 
Sbjct: 62  AQLQGGVPAQIEGRVEAMERGFRF---RPVLRVAMSDDSYGTLVLRFFHFRAAQVAQ-FS 117

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176
            G ++ V G  K  +N   +VHP Y +    +D      ++ VY +  G+     +K+I 
Sbjct: 118 PGTRLRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDCLDPVYPVLEGVGPATLRKLIG 177

Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225
           +AL RLP       + P W     LQ +  PS+  A   +H P    D         PA+
Sbjct: 178 QALERLPPEAALELLPPHW-----LQDEQLPSLRSALLTMHRPPVDTDPQQLLAGGHPAQ 232

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +RLA +ELLA Q++L   R   ++    P    G++ Q++ + +PF  T +Q+   + I 
Sbjct: 233 QRLAIEELLAHQVSLRRQRIALQR-FRAPQLRGGRLVQQLRKALPFQLTGAQQRVFEQIA 291

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D++Q   MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + 
Sbjct: 292 HDLAQPAPMLRLVQGDVGSGKTVVAALAAMLAVEHGKQVALAAPTELLAEQHLANLRGWL 351

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +   + +  + G +    R  A+  +A GQA +++GTHAL QD++ ++ L L I+DEQHR
Sbjct: 352 EPLGVRIVWLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQDAVVFHDLALAIIDEQHR 411

Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           FGV QRL L  K  A    PH L+MTATPIPRTL + +  D+D+S I E P GR P++T+
Sbjct: 412 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMAAYADLDVSAIDELPPGRTPVQTI 471

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-----------FRSVVERFNSL 510
           ++   R  E++ER++   +EG++AYW+C  IEE ++++            ++    F +L
Sbjct: 472 VLSAERRPELVERIRAACAEGRQAYWVCTLIEESEDTDKGAQNGPPRIEAQAAQVTFETL 531

Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                   +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIENAE
Sbjct: 532 SAQLPGVRVALVHGRMKPAEKQQAMLDFKQGRTDLLVATTVIEVGVDVPNASLMIIENAE 591

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
             GLAQLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE DL+ R 
Sbjct: 592 RLGLAQLHQLRGRVGRGAAASSCVLLYQGPLSLMARQRLETMRQTNDGFVIAERDLELRG 651

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            GE+LG +Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 652 PGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLDEAPEIA 696


>gi|34496388|ref|NP_900603.1| ATP-dependent DNA helicase RecG [Chromobacterium violaceum ATCC
           12472]
 gi|34102241|gb|AAQ58607.1| ATP-dependent DNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 682

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 246/646 (38%), Positives = 369/646 (57%), Gaps = 26/646 (4%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           R  DL+ + P  + D  +   I++    +   + G ++ H     + R+  ++ + DG+G
Sbjct: 29  RRFDLVLHLPLRYEDETHIYPIADAPYGQPALVEGTVTAHE-VSYKPRKQLRVQIEDGSG 87

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV--NFPLIE 157
            + L F +     LK  F EG +I   G+I++      MVHP      +++V    PL +
Sbjct: 88  TLMLRFIHFYPSQLKQ-FAEGSRIRALGEIRRGFAGDEMVHP-----KTREVREGAPLAD 141

Query: 158 A---VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           +   VY    GL+  + +K+ V A  +   L E +   L+   +    A+A  ++H P  
Sbjct: 142 SLTPVYPTVNGLTQPVLRKL-VHAELKSQRLDELLPAPLMAPLALQPFADAIRLLHQPPP 200

Query: 215 AKDFEWTS--------PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
               EW++        PA +RL +DELLA Q+++ L  +  +      I  +G ++ K+L
Sbjct: 201 ----EWSAQQLADPRLPAWQRLKFDELLAQQLSMRLAYRARRLGHAPRIAGDGSLSGKLL 256

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            ++PF  T +Q   + +I  D+ Q + M R+LQGDVGSGKT+VA +A  +A+EAG Q  +
Sbjct: 257 ASLPFQLTGAQRRVLDEIRADLRQPHPMHRLLQGDVGSGKTIVAALAALSAIEAGYQVAL 316

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  ILA+QHY  +  +     + V  ++G++ +  +++AL+ IA GQ  + +GTHALF
Sbjct: 317 MAPTEILAEQHYLKLSGWLAPLGLGVSWLSGSLRKKAKQQALDEIASGQCRLAVGTHALF 376

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           QD + + KL L IVDEQHRFGV QRL L  K   PH L+M+ATPIPRTL ++   D+D+S
Sbjct: 377 QDDVAFQKLGLAIVDEQHRFGVGQRLALQDKGEEPHQLMMSATPIPRTLAMSFYADLDVS 436

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I E P GR PI T +I   R  EV++ ++   +EG +AYW+CP IEE +    ++ V+ 
Sbjct: 437 AIDELPPGRTPIVTKLIGSPRRAEVVQFVEKTCAEGNQAYWVCPLIEESEALQLQTAVDC 496

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              L +      I ++HGRM   +K   M +F  G   +L+ATTVIEVG+DV +AS+++I
Sbjct: 497 HQQLQQDLPGRRIGLVHGRMKAAEKAEAMAAFGAGQLDVLVATTVIEVGVDVPNASLMVI 556

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           E+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS  +  RL V+    DGF IA +DL
Sbjct: 557 EHAERMGLAQLHQLRGRVGRGSARSVCVLLFENPLSDLAKARLKVIYENTDGFEIARQDL 616

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           + R  GE LG +QSG+P    A  E   +LLE AR  A  +L + P
Sbjct: 617 QIRGPGEFLGARQSGLPMLRFADLEQDQALLEAARDLAPVLLERWP 662


>gi|254524632|ref|ZP_05136687.1| ATP-dependent DNA helicase RecG [Stenotrophomonas sp. SKA14]
 gi|219722223|gb|EED40748.1| ATP-dependent DNA helicase RecG [Stenotrophomonas sp. SKA14]
          Length = 703

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 250/696 (35%), Positives = 382/696 (54%), Gaps = 35/696 (5%)

Query: 2   RPSFLNPLFAP-----LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH 56
           R + + P+ +P     L+   GVG   +   +K+   G A      DL  + P  + DR 
Sbjct: 3   RKAAVTPVLSPSGEASLAMLAGVGPAVA---AKLQARGLAT---LQDLWLHLPLRYEDRT 56

Query: 57  YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL-----NDGTGEITLLFFYRKTE 111
              +I ++       + G +       +++   Y+ +L     ++G G + L FF+ + +
Sbjct: 57  RLTRIEDLRNGVPAQVEGRV-----VAVERGMRYRPMLKVAVEDEGQGTLVLRFFHFRQQ 111

Query: 112 MLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVD 169
            +   F  G ++   G  K     + +VHP Y +   + D      ++ VY    G+   
Sbjct: 112 QVGQ-FAVGNRLRCFGTPKPGHLGLEIVHPSYQVLGRNDDPELGDRLDPVYPTVEGVGPM 170

Query: 170 LFKKIIVEALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSP 223
             +K+I +AL RLP     E +    L     PS+  A   +H P    D       T P
Sbjct: 171 TMRKLIGQALDRLPEESTLELLPSGWLDGLKLPSLRSALLTVHRPPPDADLAALAAGTHP 230

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           A+ RLA +ELLA  ++L   R   +     P+   G +A+ +L+ +PF+ T +Q    K 
Sbjct: 231 AQRRLAMEELLAHHLSLRRQRIALQAHHAPPLAGPGTLAKALLKQLPFALTGAQARVFKQ 290

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           I +D+S+ + MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ 
Sbjct: 291 IREDLSRPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRG 350

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
           + +   + +  + G +    R K +E++A+G+A +++GTHAL QD++ +  L L IVDEQ
Sbjct: 351 WLEPLGVRIAWLAGKVTGKARAKVMEQVANGEAQVVVGTHALMQDAVVFQDLALAIVDEQ 410

Query: 404 HRFGVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           HRFGV QRL L  K     + PH L+MTATPIPRTL ++   D+D+S I E P GR P++
Sbjct: 411 HRFGVHQRLALRDKGAGGNSVPHQLVMTATPIPRTLAMSEYADLDVSAIDELPPGRTPVQ 470

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           TV +  +R  E+IER+ +   EG++ YW+C  IEE +E +       + SL        +
Sbjct: 471 TVALNNDRRPELIERIALACREGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRV 530

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++HGR+   +K + M +FK G   LL+ATTVIEVG+DV +AS+++IENAE  GLAQLHQ
Sbjct: 531 GLVHGRLKAAEKLATMVAFKTGEIDLLVATTVIEVGVDVPNASLMVIENAERLGLAQLHQ 590

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG  +S C+LLY  PLS+ +  RL  ++ T DGF+IAE+DL+ R  GE+LG +Q
Sbjct: 591 LRGRVGRGSAVSRCVLLYQAPLSQMARERLQTMRETNDGFVIAEKDLELRGPGELLGTRQ 650

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           +G+  F IA       LL      A+ +L Q P L 
Sbjct: 651 TGLAGFRIADLARDAGLLPGVHDLAERLLAQQPALA 686


>gi|194337413|ref|YP_002019207.1| ATP-dependent DNA helicase RecG [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309890|gb|ACF44590.1| ATP-dependent DNA helicase RecG [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 706

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/715 (35%), Positives = 383/715 (53%), Gaps = 42/715 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG K    L +      A      DL  Y P  ++DR     IS +++   VT+
Sbjct: 7   IAYLKGVGTKKGAILRE------AGMVTLDDLFDYFPRRYLDRSAMKSISSLADGETVTV 60

Query: 73  TGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            G + +    QL    P    +K  L D TG + L +F R          +G  + V GK
Sbjct: 61  VGTVIKT---QLDGDSPGRARFKAWLGDQTGVLELTWF-RGVRYFSRSVVQGDSLAVHGK 116

Query: 129 IKKLKNRIIMVHPHYI--------FHNSQDVNFPLIEAVYSLP----------TGLSVDL 170
           +    +   M HP Y           N +  +F L      +P           GL    
Sbjct: 117 VSYFGHHAQMQHPDYDRLTPDLIESRNGECSDFELYNTGKIIPLYPTNEAMKQAGLGSKS 176

Query: 171 FKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
            + +I  A     P   E +   +L   +   +AEA+  +H P      E  + AR R+ 
Sbjct: 177 LRTLIARAFELCTPGKEENLTSSMLADNNLLPLAEAYREMHFP---SSHEQLARARYRMK 233

Query: 230 YDELLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
           + EL   Q+   L   + ++    +     G++ QK+   +PF+ T++Q++A+++I +D+
Sbjct: 234 WTELFYAQLLFALRHSEIRRNRAAVKFTHSGEVTQKLYATLPFALTEAQKTAVREIYRDL 293

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
              + M R+LQGDVGSGKT+VA+ AMA AV+ G QA  MAP  ILA QHY  +K+     
Sbjct: 294 RSGSPMNRLLQGDVGSGKTIVAMFAMALAVDNGLQAAFMAPTEILAVQHYLVMKRLFNPL 353

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            + V ++TG   +  R++ L  +  G+ HI +GTHA+ +  + Y  L LVI+DEQHRFGV
Sbjct: 354 GLQVGLVTGRQRKKERQEVLAALGSGELHIAVGTHAMIEPGVSYATLGLVIIDEQHRFGV 413

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            QR    +KA  PHVLLMTATPIPRTL +   GD+D+S I + P GR P++T++      
Sbjct: 414 LQRKAFQEKAIHPHVLLMTATPIPRTLTMGVFGDLDVSVIRQMPVGRIPVRTIVRSEEEK 473

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMS 526
            +V + L+  +++G++ Y + P +EE ++ + ++ VE +  L     + +   +IHG++S
Sbjct: 474 GKVYDFLRAEIAKGRQGYIVYPLVEESEKMDLKAAVESYQELSSTLFADLRSGLIHGQLS 533

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +KESVM+ F+ G   LL+ TTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG
Sbjct: 534 PDEKESVMEQFRRGEIDLLVGTTVIEVGVDVPNATVMVIEHAERFGLAQLHQLRGRVGRG 593

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFL 645
           E  S+C LLY   +S ++  RLS +++T DGFLI+E D K R  G ILG +QSG +    
Sbjct: 594 EHRSTCFLLY-AKMSADARERLSAMESTTDGFLISEIDAKIRGAGNILGKEQSGTLSGLR 652

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +A       +++ AR  A  I+ +D  L S     IR   Y+ QY++ F     G
Sbjct: 653 VADLNKDFDIMQSARAAAFRIVEEDGQLRSAEHVMIR-ECYVRQYHDRFTLADIG 706


>gi|53803678|ref|YP_114457.1| ATP-dependent DNA helicase RecG [Methylococcus capsulatus str.
           Bath]
 gi|53757439|gb|AAU91730.1| ATP-dependent DNA helicase RecG [Methylococcus capsulatus str.
           Bath]
          Length = 691

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 255/678 (37%), Positives = 372/678 (54%), Gaps = 29/678 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G G K    LS++   G     +  DLL + P  + DR     +  +   +   +
Sbjct: 12  LDNLQGAGTKT---LSRLNKLGI---FKLQDLLLHLPIRYEDRTRLTPLGALQPGQPALV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G ++  +      RR     ++DGTG + L FF+ + E L+      R+I   G+++  
Sbjct: 66  EGGVA-FTDVAGTSRRSLICRISDGTGFLDLRFFHFRPEQLR-ALSSLRRIRCFGEVRVG 123

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            + + M+HP Y     +    PL   +  VY    GLS    ++ + +AL RL   PE  
Sbjct: 124 VHGLEMIHPQY-EALPETAPAPLETGLTPVYPTTDGLSQQSLRRFVAQAL-RL-AEPEHE 180

Query: 190 EKDLLQKKSFP-----SIAEAFNIIHNPRK--AKDFEWTSPARERLAYDELLAGQIALLL 242
           +   L  +  P     S  +A   +H P     K  E    AR RLAY+ELLA  ++L  
Sbjct: 181 KSFRLPPRLAPELDALSWWDAVRTLHRPMDDCPKALER---ARRRLAYEELLAHHLSLAR 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            R++ ++     +N +  I       +PFS T +Q   I +I  D+     MLR+LQGDV
Sbjct: 238 FRQEIRRRSAPVLNTDEAIKTTFQSGLPFSLTGAQRRVIGEIESDLRSGRPMLRLLQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA  A  AA  +G Q  +MAP  +LA+QH+     + +++ +   ++TG +   
Sbjct: 298 GSGKTIVAAHAALAAASSGWQTALMAPTELLAEQHFHTFSGWLESSGVTTTLLTGKIKGQ 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----A 418
            RR+AL  IA G   ++IGTHALFQD++++++L L I+DEQHRFGV QRL L  K    A
Sbjct: 358 GRREALAAIASGATALVIGTHALFQDAVEFHRLGLTIIDEQHRFGVHQRLALRDKAHPLA 417

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +    D+D S + E P GR P+ T +IP  R  E+I+R+   
Sbjct: 418 ALPHQLVMTATPIPRTLAILGYADLDCSVLDELPPGRTPVVTRLIPSTRRGEIIDRIANW 477

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           ++ G++AYW+C  I+E +     +      SL +      I ++HGRMS  +K+ VM  F
Sbjct: 478 IARGRQAYWVCTLIDESEALQCEAAANTAASLAQTLPGLRIRLLHGRMSAAEKDGVMREF 537

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   +L+ATTVIEVG+DV +A ++IIEN E  GLAQLHQLRGRVGRG   + CILLY 
Sbjct: 538 KAGESDILVATTVIEVGVDVPNAGLMIIENPERLGLAQLHQLRGRVGRGPGDAYCILLYQ 597

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS     RL +LK++ DGF IAE DL+ R  GE LG++Q+G+ +F IA       L+E
Sbjct: 598 PPLSAIGRERLKILKDSSDGFAIAERDLRLRGPGEFLGVRQTGLARFRIADLTRDADLIE 657

Query: 658 IARKDAKHILTQDPDLTS 675
                A+ +L   P+L +
Sbjct: 658 TVSASAERVLEHHPELVA 675


>gi|58580774|ref|YP_199790.1| ATP-dependent DNA helicase RecG [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425368|gb|AAW74405.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 717

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 257/708 (36%), Positives = 387/708 (54%), Gaps = 52/708 (7%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           PS      APLS+  GVG K +  F ++ I           DL  + P  + DR     I
Sbjct: 9   PSLAVAGQAPLSSLPGVGPKVADKFAARGI-------LSVQDLWLHLPLRYEDRTRLTTI 61

Query: 62  SEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118
           +++       I G +      F+    RP  ++ ++D + G + L FF+ +   +   F 
Sbjct: 62  AQLQSGVPAQIEGRVDAVERGFRF---RPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FA 117

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176
            G ++ V G  K  +N   +VHP Y +    +D      ++ VY +  G+     +K+I 
Sbjct: 118 VGTRVRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177

Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225
           +AL RLP       + P W     LQ +  PS+  A   +H P    D         PA+
Sbjct: 178 QALERLPPEAALELLPPHW-----LQDEQLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQ 232

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +RLA +ELLA Q++L   R   ++     +   G + Q++ R +PF  T +Q+   + I 
Sbjct: 233 QRLAIEELLAHQLSLRRQRIALQRFHAPSLPGNGTLVQQLRRALPFQLTGAQQRVFEQIA 292

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
           +D++Q   MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + 
Sbjct: 293 RDLAQSWPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRDWL 352

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +   I +  + G +    R  A+  +A GQA +++GTHAL Q+++ ++ L L I+DEQHR
Sbjct: 353 EPLGIRIVWLAGKVTGKARAAAMADVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHR 412

Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           FGV QRL L  K  A    PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+
Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTI 472

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------------FRSVVERF 507
           ++   R  E++ER++   +EG++AYW+C  IEE +E                 ++    F
Sbjct: 473 VLSAERRPELVERIRAACAEGRQAYWVCTLIEESEEPEKGARGQHGGPPRIEAQAAEVTF 532

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +L        +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIE
Sbjct: 533 EALSAQLPGVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIE 592

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           NAE  GLAQLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+
Sbjct: 593 NAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLE 652

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            R  GE+LG +Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 653 LRGPGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLEEVPEIA 700


>gi|288942236|ref|YP_003444476.1| ATP-dependent DNA helicase RecG [Allochromatium vinosum DSM 180]
 gi|288897608|gb|ADC63444.1| ATP-dependent DNA helicase RecG [Allochromatium vinosum DSM 180]
          Length = 717

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 239/647 (36%), Positives = 363/647 (56%), Gaps = 16/647 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLF+ P  + DR     ++EI       + G I + S   L +RR  K+ + D  G   
Sbjct: 57  DLLFHLPLRYQDRTRLTPLTEIEVGVETWVEGEILE-SGIGLGRRRSLKVWVGDALGAGL 115

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159
           LL F+  +         G ++   G++++    + MVHP Y    ++  + P+   +  +
Sbjct: 116 LLRFFYFSPQQAAALKPGERVRCYGEVRQGPQSLEMVHPEYRLLRAE-ADEPIAACLTPI 174

Query: 160 YSLPTGLSVDLFKKIIVEALSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           Y    GL    ++ +  +AL+ +      E +  ++L     P++ EA   +H P     
Sbjct: 175 YPSTEGLQQTSWRGLTDQALALMERTAPAELLPPEILDPLGLPTLTEALAFLHRPPVGTS 234

Query: 218 F----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                E   PA  RLA++EL+A Q++L  MR + ++     +  +G + +++  ++PF  
Sbjct: 235 LQDLTEGRHPAFARLAFEELVAHQVSLRRMRLEQRRVSAPVLGGDGGLRERLRASLPFRL 294

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T SQE  + +I  D++Q   M R+LQGDVG+GKT+VA +A   A+E+  QA +MAP  +L
Sbjct: 295 TASQERVVAEIAADLAQSRPMQRLLQGDVGAGKTVVAALAALQALESDCQAALMAPTELL 354

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH+  +  +     +    + G      R + L  IA G A I++GTHAL QD + + 
Sbjct: 355 AEQHHRSLSGWLGALGLEPVWLAGRHKGRERDERLAAIASGAAPIVVGTHALLQDDVAFQ 414

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            L LVI+DEQHRFGV QRLKL +K      APH L+MTATPIPR+L +T   D+D+S I 
Sbjct: 415 DLGLVIIDEQHRFGVHQRLKLREKGGGEDGAPHQLIMTATPIPRSLAMTLYADLDLSVID 474

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P GR PI T  +P  R DEVIER++     G++AYW+C  IEE +    ++  +    
Sbjct: 475 GLPPGRTPIVTRAVPDTRRDEVIERVRQACLAGRQAYWVCTLIEESEVLECQAAEDTARQ 534

Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L        + ++HGR+   ++++VM +F +G   LL+ATTVIEVG+DV +AS++IIEN 
Sbjct: 535 LSACLEGLRVGLVHGRLKSQERDAVMAAFASGALDLLVATTVIEVGVDVPNASLMIIENP 594

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E  GLAQLHQLRGRVGRG   S C+LLYH PLS  +  RL +++++  GF IAE DL  R
Sbjct: 595 ERLGLAQLHQLRGRVGRGSVESHCLLLYHAPLSAIARERLGIIRDSTSGFEIAERDLAIR 654

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             GE+LG +Q+G  +F IA P     L+  A++ A  +L   P+L +
Sbjct: 655 GAGEVLGTRQTGSIQFRIADPLRDQPLIAEAQRAADRLLVGYPELVT 701


>gi|255658147|ref|ZP_05403556.1| ATP-dependent DNA helicase RecG [Mitsuokella multacida DSM 20544]
 gi|260849454|gb|EEX69461.1| ATP-dependent DNA helicase RecG [Mitsuokella multacida DSM 20544]
          Length = 687

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 269/697 (38%), Positives = 388/697 (55%), Gaps = 37/697 (5%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +GVG K    L+++         R  D+L Y P ++ D+    +I+++    + T+ G 
Sbjct: 10  LKGVGPKKKAELARL------GIARVYDVLTYFPRTYEDQSALTRIADLRPGTVATVAGT 63

Query: 76  ISQHSSFQLQK-RRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I    + Q Q  RR   IL   LNDG+G + + +F +K   LKN    GR++ V+GK   
Sbjct: 64  IV---NLQEQTGRRGLTILTAYLNDGSGLLQVTWFNQK--YLKNKLKVGRRVFVSGKPAY 118

Query: 132 L---KNRIIMVHPHY---IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
                 +  M    Y   +    Q      I  VY+    L+   F+ ++ EAL     L
Sbjct: 119 AYGGHGQFAMSQLRYFQILDEGEQAAGLCGILPVYAATERLNQKFFRTLVEEALEAADEL 178

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PE I   +L ++      EA   +H P   KD E    AR RLA+ EL   Q  LLL++K
Sbjct: 179 PELIPARILAERKLMGRREALRAVHFP---KDGEELKRARYRLAFSELYLIQCGLLLIKK 235

Query: 246 QFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           Q ++  +GI     GK+   +L  +PF+ T  Q+ A ++I +DM +   M R++QGDVGS
Sbjct: 236 QSQQTRLGIRHQPNGKLVAAVLSGLPFTLTHDQQQAWQEICRDMERTVPMRRLVQGDVGS 295

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++A++A+   VE G Q  +MAP  ILA QHYE +        I V  ++G++    R
Sbjct: 296 GKTVIAMLALVKTVETGWQGAMMAPTEILAAQHYENLSAKLAPLGIRVGYLSGHLTPRER 355

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHV 423
           R+  E IA  +  I+IGTHAL QD + + +L LVI DEQHRFG+ QR  L +K A  P V
Sbjct: 356 REMHEAIACHEVDIVIGTHALIQDDVHFARLGLVITDEQHRFGIAQRAALEKKGAHVPDV 415

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRT+ LT  GD+D+S I E P GR+PI+T +   +R   + + ++  +  G+
Sbjct: 416 LVMTATPIPRTMTLTVYGDLDVSLIRELPPGRQPIRTFVRRPDRRPLIYQYVRSQIEAGR 475

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGT 541
           +AY +CP IE  +ES+  S  E ++ L       I   ++HG+++  +KE VM  F    
Sbjct: 476 QAYVVCPLIEMNEESDLPSAEEVYDELRFGIFRGIPCGLVHGKLAPAEKERVMQDFYADK 535

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            KLL++TTVIEVG++V +ASI++IE+AE FGLAQLHQLRGR+GRG   S CIL+     +
Sbjct: 536 IKLLVSTTVIEVGVNVPNASIMVIEHAERFGLAQLHQLRGRIGRGSYASYCILVSEGK-T 594

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ-PELHDSLLEIAR 660
           +N+  RL ++    DGF +AEEDL+ R  G+  G  Q G+P   IA+ PE    LLE A 
Sbjct: 595 ENARERLRIMATVSDGFKLAEEDLRLRGPGQFFGSMQHGLPDLKIARVPEDIAILLE-AH 653

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
           + A+  LT   DL       IR +L L QY E FQ I
Sbjct: 654 RAAEATLTSQGDL-----DFIRPILAL-QYKERFQHI 684


>gi|238764306|ref|ZP_04625257.1| ATP-dependent DNA helicase recG [Yersinia kristensenii ATCC 33638]
 gi|238697457|gb|EEP90223.1| ATP-dependent DNA helicase recG [Yersinia kristensenii ATCC 33638]
          Length = 638

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 241/618 (38%), Positives = 365/618 (59%), Gaps = 20/618 (3%)

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           VT+ G + + S     +RR     ++DG+G +TL FF     M KN    G+ +   G+ 
Sbjct: 7   VTVEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEA 64

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL--PV 184
           K+      ++HP Y  H  +++   L E+   VY    G+     +K+I +AL+ L   V
Sbjct: 65  KRGNTGPEIIHPEYRVHG-ENIGVELQESLTPVYPTTEGIRQATLRKLIDQALAMLDSSV 123

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIAL 240
           + E +  +L   +S  S+ EA + +H+P    +  D E    PA+ RL  +ELLA  +++
Sbjct: 124 IAELLPIEL--SRSLISLPEAIHTLHSPPADIQLADLEQGKHPAQRRLIMEELLAHNLSM 181

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +R   +    + +  E ++ Q+ L  +PF+PT +Q+  + +I QDM+    M+R++QG
Sbjct: 182 LAVRAGAQSYRALSLLPEEQLKQRFLAALPFTPTHAQQRVVAEIEQDMTHDFPMMRLIQG 241

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V  + G   
Sbjct: 242 DVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLEPLGLQVGWLAGKQK 301

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R    E +A GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K   
Sbjct: 302 GKARLAQQEAVASGQVSMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLALWEKGEE 361

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  +VI+R+K
Sbjct: 362 QGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQRVK 421

Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
              L EG++AYW+C  IEE +    ++       L        + ++HGRM   +K++VM
Sbjct: 422 NACLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAVM 481

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S C+L
Sbjct: 482 LAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVL 541

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A      +
Sbjct: 542 LYKTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLRDQA 601

Query: 655 LLEIARKDAKHILTQDPD 672
           ++   ++ A+H+  Q P+
Sbjct: 602 MIPEVQRVARHLHQQYPE 619


>gi|217969253|ref|YP_002354487.1| ATP-dependent DNA helicase RecG [Thauera sp. MZ1T]
 gi|217506580|gb|ACK53591.1| ATP-dependent DNA helicase RecG [Thauera sp. MZ1T]
          Length = 684

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/670 (36%), Positives = 368/670 (54%), Gaps = 21/670 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P   + GVG + +  L+++   G        D+L + P  + D      I+ +       
Sbjct: 6   PPRGWPGVGAQLAGRLARLDLRGPR------DVLLHLPLRYEDETRLTPIARLRPGFPAQ 59

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEIT--LLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +   S   L+ RR     + D +G +    L FY   + L      G ++ + G+ 
Sbjct: 60  VEGEV-LGSEVVLRPRRQLVARIADDSGTLVARWLNFYPSQQKL---LAPGGRVRLFGEA 115

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
           +     + MVHP        +     +  VY    G+     +K++ +AL   P L E +
Sbjct: 116 RGGFFGLEMVHPRLRAVAPGEALPDALTPVYPTTAGVGQITLRKLVAQALQSEP-LDELL 174

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRK 245
               L +   P  AEA + +H+P    D     +   PA +R+ ++ELL  Q++L     
Sbjct: 175 PAAWLHRLGLPGFAEALHALHHPAPDADPFALEQREHPAWQRMKFEELLVQQLSLRRAWL 234

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             + +  + +     +   +L ++PF PT +Q     +I  D++  + M R+LQGDVGSG
Sbjct: 235 ARRAQAAVALPARALLTAALLESLPFRPTGAQARVGAEIAADLAAPHPMQRLLQGDVGSG 294

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KTLVA +AM  A E G QA +MAP  ILA+QH++ +  + +   I V  ++G+  +  R 
Sbjct: 295 KTLVAALAMLQAAENGWQAAMMAPTEILAEQHWKKLSAWLEPLGIGVAWLSGSRRKRARE 354

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PH 422
             L R+A G+  + +GTHAL +D +   +L LV+VDEQHRFGV+QRL L +K      PH
Sbjct: 355 AELARLASGEVLLAVGTHALIEDPVTLPRLALVVVDEQHRFGVRQRLALREKGEGGRRPH 414

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+M+ATPIPRTL +T   D+D+S + E P GR PI+T ++   R DEV+ R++    EG
Sbjct: 415 MLMMSATPIPRTLAMTHYADLDVSVLDELPPGRTPIRTRLVSDVRRDEVVARVRAACLEG 474

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++AYW+CP IEE +    ++  + F +L E      + ++HGR+ + +K + M +F  G 
Sbjct: 475 RQAYWVCPLIEESEALQLQTAQDTFATLVEALPELRVGLVHGRLRNEEKSATMAAFSAGA 534

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S CIL+Y  PLS
Sbjct: 535 LDLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILIYAQPLS 594

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    RL V+    DGF IA EDL+ R  GE +G +QSG+P    A  EL   L E AR+
Sbjct: 595 QTGRERLKVIYENIDGFAIAREDLRIRGPGEFVGARQSGVPLLRYADLELDAGLAEPARE 654

Query: 662 DAKHILTQDP 671
            A+H+L  DP
Sbjct: 655 LAEHLLAHDP 664


>gi|166713265|ref|ZP_02244472.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 717

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 256/708 (36%), Positives = 387/708 (54%), Gaps = 52/708 (7%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           PS      APLS+  GVG K +  F ++ I           DL  + P  + DR     I
Sbjct: 9   PSLAVAGQAPLSSLPGVGPKVADKFAARGI-------LSVQDLWLHLPLRYEDRTRLTTI 61

Query: 62  SEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118
           +++       I G +      F+    RP  ++ ++D + G + L FF+ +   +   F 
Sbjct: 62  AQLQSGVPAQIEGRVDAVERGFRF---RPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FA 117

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176
            G ++ V G  K  +N   +VHP Y +    +D      ++ VY +  G+     +K+I 
Sbjct: 118 VGTRVRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177

Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225
           +AL RLP       + P W     LQ +  PS+  A   +H P    D         PA+
Sbjct: 178 QALERLPPEAALELLPPHW-----LQDEQLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQ 232

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +RLA +ELLA Q++L   R   ++     +   G + Q++   +PF  T +Q+   + I 
Sbjct: 233 QRLAIEELLAHQLSLRRQRIALQRFHAPSLPGNGTLVQQLRGALPFQLTGAQQRVFEQIA 292

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
           +D++Q + MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + 
Sbjct: 293 RDLAQSSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRDWL 352

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +   I +  + G +    R  A+  +A GQA +++GTHAL Q+++ ++ L L I+DEQHR
Sbjct: 353 EPLGIRIVWLAGKVTGRARAAAMADVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHR 412

Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           FGV QRL L  K  A    PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+
Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTI 472

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------------FRSVVERF 507
           ++   R  E++ER++   +EG++AYW+C  IEE +E                 ++    F
Sbjct: 473 VLSAERRPELVERIRAACAEGRQAYWVCTLIEESEEPEKGARGQHGGPPRIEAQAAEVTF 532

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +L        +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIE
Sbjct: 533 EALSAQLPGVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIE 592

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           NAE  GLAQLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+
Sbjct: 593 NAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLE 652

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            R  GE+LG +Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 653 LRGPGELLGTRQTGLASFRIADLARDAGLLPRVQVVAERLLEEAPEIA 700


>gi|167580654|ref|ZP_02373528.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis TXDOH]
          Length = 735

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/662 (37%), Positives = 371/662 (56%), Gaps = 29/662 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 62  TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 121

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP        D + PL +A
Sbjct: 122 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPSV---KVVDEDAPLPQA 177

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  + +  LQ    PS+A+A  I+H+P
Sbjct: 178 LTPVYPSTAGVSQAYLRKAIDNALTRTPLPELLPPEVARAYLQPLDVPSLADAVRILHHP 237

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263
               D     + T PA  R+ +DELLA Q++L    ++ +      +    +     ++ 
Sbjct: 238 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGASLSA 297

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 298 RLHAALPFTLTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 357

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTH
Sbjct: 358 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKDKRAALEAAALGTARLVIGTH 417

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRT
Sbjct: 418 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 477

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE
Sbjct: 478 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 537

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 538 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 597

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ 
Sbjct: 598 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 657

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   PD+
Sbjct: 658 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAGHPDV 717

Query: 674 TS 675
            +
Sbjct: 718 VA 719


>gi|294791988|ref|ZP_06757136.1| ATP-dependent DNA helicase RecG [Veillonella sp. 6_1_27]
 gi|294457218|gb|EFG25580.1| ATP-dependent DNA helicase RecG [Veillonella sp. 6_1_27]
          Length = 680

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/662 (36%), Positives = 381/662 (57%), Gaps = 33/662 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+T +G+G      L K+   G  N T    LL Y P ++ DR    +I ++       +
Sbjct: 5   LTTIKGIGPGREKQLHKL---GITNVT---SLLTYFPRTYEDRRTIYRIGDLKSGMTGGV 58

Query: 73  TGYISQHSSFQLQKRRP------YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            G +       +Q++RP       ++++ DGTG + ++ F +  +  KN + +G++I   
Sbjct: 59  VGTV-----IAVQEKRPRPQLSILEVVIADGTGPLKIVLFNQGYK--KNFYKKGQRIYAY 111

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           GK +     + M  P     N  D   P   I  +Y+L  G+S  + +  +    +    
Sbjct: 112 GKAEFQYGTMQMNTPQ--MENLGDSGEPDRGIVPIYALADGVSQFVVRSSVRNWFAANHE 169

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE +  ++ +   + S  +AF ++H P  ++ +E    AR +LAY+EL   Q  L L+R
Sbjct: 170 LPEILPVEVRESHHYMSRYDAFKMMHFPDSSEHYE---EARYQLAYEELFVMQAGLALLR 226

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            + +   G  +   G++  + + N+PFS T  Q+ A++DI  DM  +  M R+LQGDVGS
Sbjct: 227 SKEQCHRGPKMGPNGELMAQCIENLPFSLTGDQQRALEDIRIDMEDERPMQRLLQGDVGS 286

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA +++  A+E G Q  +MAP  ILA QHYE I+    N  I +E++TG+  +  +
Sbjct: 287 GKTIVATLSLLKAIENGYQGALMAPTEILAAQHYEGIRTVCANLGITIELLTGSSTKKEK 346

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
               E +A G+  +IIGTHAL Q+ + ++ L LVI+DEQHRFGV QR +L QK T PHVL
Sbjct: 347 EYIYEGLADGRIQMIIGTHALIQEGVNFHNLGLVIIDEQHRFGVDQRARLQQKGTYPHVL 406

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRT+ L+  GD+ +S I E P GRKP+KT  +  +  + +       ++EG++
Sbjct: 407 IMTATPIPRTMTLSVYGDLAVSLIKEMPPGRKPVKTYAVDSSYKERLRTFFGKEMAEGRQ 466

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP +EE ++ + ++  E +  L E+F  +  + ++HGRM   +K+ VM++F  G  
Sbjct: 467 VYVVCPLVEESEKLDLQAAEELYLELKEYFYKAYEVGLVHGRMKPSEKDEVMNAFHRGEI 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL++TTVIEVG++V +A+I+ +E AE FGL+QLHQLRGRVGRG   S CIL+     SK
Sbjct: 527 SLLVSTTVIEVGVNVPNATIMCVEGAERFGLSQLHQLRGRVGRGAHQSYCILVSD---SK 583

Query: 603 N--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           N  S  RL +++  +DGF +AE+DL  R  G++ G+ QSG+P   +A       +L  AR
Sbjct: 584 NDVSQERLKLMEQIQDGFELAEQDLLLRGSGQLFGLAQSGLPDLRVANIIKDIEILVKAR 643

Query: 661 KD 662
           KD
Sbjct: 644 KD 645


>gi|194367028|ref|YP_002029638.1| ATP-dependent DNA helicase RecG [Stenotrophomonas maltophilia
           R551-3]
 gi|194349832|gb|ACF52955.1| ATP-dependent DNA helicase RecG [Stenotrophomonas maltophilia
           R551-3]
          Length = 703

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 249/697 (35%), Positives = 384/697 (55%), Gaps = 35/697 (5%)

Query: 2   RPSFLNPLFAP-----LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH 56
           R + + P+ +P     L+   GVG   +   +K+   G A      DL  + P  + DR 
Sbjct: 3   RKAAVTPVLSPSGEASLAMLAGVGPAVA---AKLQARGLAT---LQDLWLHLPLRYEDRT 56

Query: 57  YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL-----NDGTGEITLLFFYRKTE 111
              +I ++       + G +       +++   Y+ +L     ++G G + L FF+ + +
Sbjct: 57  RLTRIEDLRNGVPAQVEGRV-----VAVERGMRYRPMLKVAVEDEGQGTLVLRFFHFRQQ 111

Query: 112 MLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVD 169
            +   F  G ++   G  K     + +VHP Y +   + D      ++ VY    G+   
Sbjct: 112 QVGQ-FAVGNRLRCFGTPKPGHLGLEIVHPSYQVLGRNDDPELGDRLDPVYPTVEGVGPM 170

Query: 170 LFKKIIVEALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSP 223
             +K+I +AL RLP     E +    L     PS+  A   +H P    D       T P
Sbjct: 171 TMRKLIGQALDRLPEESTLELLPSGWLDGLGLPSLRSALLTVHRPPPDADLAALAAGTHP 230

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           A+ RLA +ELLA  ++L   R   +     P+   GK+A+ +L+ +PF+ T +Q    K 
Sbjct: 231 AQRRLAMEELLAHHLSLRRQRIALQAHHAPPLAGPGKLAKALLKQLPFALTGAQARVFKQ 290

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           I +D+++ + MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ 
Sbjct: 291 IREDLARPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRG 350

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
           + +   + +  + G +    R K +E++A+G+A +++GTHAL Q+++ +  L L IVDEQ
Sbjct: 351 WLEPLGVRIAWLAGKVTGKARAKVMEQVANGEAQVVVGTHALMQEAVVFQDLALAIVDEQ 410

Query: 404 HRFGVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           HRFGV+QRL L  K     + PH L+MTATPIPRTL ++   D+D+S I E P GR P++
Sbjct: 411 HRFGVRQRLALRDKGAGGNSVPHQLVMTATPIPRTLAMSEYADLDVSAIDELPPGRTPVQ 470

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           TV +  +R  E+IER+ +   EG++ YW+C  IEE +E +       + SL        +
Sbjct: 471 TVALNNDRRPELIERIALACQEGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRV 530

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++HGR+   +K + M +FK G   LL+ATTVIEVG+DV +AS+++IENAE  GLAQLHQ
Sbjct: 531 GLVHGRLKAAEKLATMVAFKAGEIDLLVATTVIEVGVDVPNASLMVIENAERLGLAQLHQ 590

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG  +S C+LLY  PLS+ +  RL  ++ T DGF+IAE+DL+ R  GE+LG +Q
Sbjct: 591 LRGRVGRGSAVSRCVLLYQAPLSQMARERLQTMRETNDGFVIAEKDLELRGPGELLGTRQ 650

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           +G+  F IA       LL      A+ +L Q P L  
Sbjct: 651 TGLAGFRIADLARDAGLLPGVHDLAERLLDQQPALAD 687


>gi|157149269|ref|YP_001456588.1| ATP-dependent DNA helicase RecG [Citrobacter koseri ATCC BAA-895]
 gi|157086474|gb|ABV16152.1| hypothetical protein CKO_05109 [Citrobacter koseri ATCC BAA-895]
          Length = 693

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 252/671 (37%), Positives = 373/671 (55%), Gaps = 28/671 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGIKQATLRKLTDQALDLLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P  +    D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMTSLPEALRTLHRPPPSLQLSDLETGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++     ++    +  ++L  +PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRFHAQRLSANDSLKNQLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHASNFRNWFAPLGIEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARLAQQEAIASGQVQMVVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
               EG++AYW+C  IEE      ++    +  L        I ++HGRM   +K++VM 
Sbjct: 478 ACTQEGRQAYWVCTLIEESDLLEAQAAEATWEELRLALPELKIGLVHGRMKPAEKQAVMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNTEFKVADLLRDQAI 657

Query: 656 LEIARKDAKHI 666
           +   ++ A+HI
Sbjct: 658 IPDVQRIARHI 668


>gi|255101722|ref|ZP_05330699.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-63q42]
 gi|255307591|ref|ZP_05351762.1| ATP-dependent DNA helicase RecG [Clostridium difficile ATCC 43255]
          Length = 685

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 244/636 (38%), Positives = 375/636 (58%), Gaps = 12/636 (1%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEI 101
           DLL+Y P  F DR+   KI+++ +   VTI   IS  ++F  ++     KI + D TG  
Sbjct: 31  DLLYYFPRQFEDRNNLKKIAQLEDGEKVTIKAVISSINTFSPKEGMTLTKIDVKDETGSA 90

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            L+FF +    +KN F  G  I V GK+KK  N + +      +  +   N      VY 
Sbjct: 91  KLVFFNK--SYIKNTFRPGDSILVFGKVKKKFNNLELTSCELEYLTNSPKNTCRFMPVYQ 148

Query: 162 LPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
           L  G++      II   L  +  ++ E++ + +++K    SI  A   IH+P   +  + 
Sbjct: 149 LTYGVTNKEIMSIIRTVLEDKELIIQEYMPQRIIEKYRLCSIDFAVRNIHSPSSKESLKI 208

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
              A  R+ ++ELL  Q+ L + +    KE GI      K  +KI+  +PF  TK+Q  A
Sbjct: 209 ---ALYRIVFEELLILQLGLFVFKSGRNKEDGIKFET-SKDLKKIISALPFKLTKAQNRA 264

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           + +I+QDM+ +  M R++QGDVGSGKT+VAL+A+A  V  G Q  +MAP  ILA QHY  
Sbjct: 265 LDEIIQDMNLEKIMNRLVQGDVGSGKTVVALLALANCVLNGYQGALMAPTEILAGQHYIS 324

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           + +  ++  I V ++ G++ +  +   LE+I + +  I+IGTHAL +D +++  + LVI 
Sbjct: 325 LTESLKDFGINVGLLIGSLTKKQKDTVLEQIKNNEIDILIGTHALIEDKVEFNNIGLVIT 384

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQHRFGV QR KL+ K   P +L+MTATPIPRTL L   GD+DIS I E P GR+PI+T
Sbjct: 385 DEQHRFGVMQRSKLSLKGANPDILVMTATPIPRTLALILYGDLDISIIDELPPGRQPIET 444

Query: 461 VIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-S 517
           + I  ++ D     L +  +  G++ Y +CP +EE +    +S VE    L  E+F    
Sbjct: 445 IAIEKSKRDRAYNNLVRREVESGRQVYIVCPLVEESEAIEAKSAVELVEELRAEYFHDLR 504

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + ++HG+M   +K+ VM  FKN    +L++TTVIEVG++V +A+++IIENAE FGLAQLH
Sbjct: 505 LGLLHGKMKSSEKDEVMRLFKNKEIDILVSTTVIEVGVNVPNATLMIIENAERFGLAQLH 564

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG   S C+L+Y    +     R+++++ T DGF I+E+DL+ R  GE  G +
Sbjct: 565 QLRGRVGRGSHKSYCVLIYDSK-TDVCRQRMAIMEETNDGFKISEKDLEIRGPGEFFGTR 623

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           Q G+P+  +A    H  +L++A+++A++IL +D +L
Sbjct: 624 QHGLPELKVANLFKHIKILKLAQQEARYILGEDNNL 659


>gi|255656538|ref|ZP_05401947.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-23m63]
 gi|296450011|ref|ZP_06891775.1| DNA helicase RecG [Clostridium difficile NAP08]
 gi|296878392|ref|ZP_06902400.1| DNA helicase RecG [Clostridium difficile NAP07]
 gi|296261281|gb|EFH08112.1| DNA helicase RecG [Clostridium difficile NAP08]
 gi|296430690|gb|EFH16529.1| DNA helicase RecG [Clostridium difficile NAP07]
          Length = 685

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/636 (38%), Positives = 373/636 (58%), Gaps = 12/636 (1%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEI 101
           DLL+Y P  F DR+   KI+++ +   VTI   IS  ++F  ++     KI + D TG  
Sbjct: 31  DLLYYFPRQFEDRNNLKKIAQLEDSEKVTIKAVISSINTFSPKEGMTLTKIDVKDETGSA 90

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            L+FF +    +KN F  G  I V GK+KK  N + +      +  +   N      VY 
Sbjct: 91  KLVFFNK--SYIKNTFRPGDSILVFGKVKKKFNNLELTSCELEYLTNSPKNTCRFMPVYQ 148

Query: 162 LPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
           L  G++      II   L  +  ++ E++ + ++ K    SI  A   IH+P   +  + 
Sbjct: 149 LTYGVTNKEIMSIIRTVLEDKDLIIQEYMPQRIIDKYRLCSIDFAVRNIHSPNSKESLKI 208

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
              A  R+ ++ELL  Q+ L + +    KE GI      K  +KI+  +PF  TK+Q  A
Sbjct: 209 ---ALYRIVFEELLILQLGLFVFKSGRNKEDGIKFET-SKDLKKIINALPFKLTKAQNRA 264

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           + +I+QDM  +  M R++QGDVGSGKT+VAL+A+A  V  G Q  +MAP  ILA QHY  
Sbjct: 265 LGEIIQDMDSEKIMNRLVQGDVGSGKTVVALLALANCVLNGYQGALMAPTEILAGQHYIS 324

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           + +  ++  I V ++ G++ +  +   LE++ + +  I+IGTHAL +D +++  + LVI 
Sbjct: 325 LTESLKDFGINVGLLIGSLTKKQKDTVLEQVKNNEIDILIGTHALIEDKVEFNNIGLVIT 384

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQHRFGV QR KL+ K   P +L+MTATPIPRTL L   GD+DIS I E P GR+PI+T
Sbjct: 385 DEQHRFGVMQRSKLSLKGVNPDILVMTATPIPRTLALILYGDLDISIIDELPPGRQPIET 444

Query: 461 VIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-S 517
           + I  ++ D     L +  +  G++ Y +CP +EE +    +S VE    L  E+F    
Sbjct: 445 LAIEKSKRDRAYNNLVRREVESGRQVYIVCPLVEESEAIEAKSAVELVEELRAEYFHDLR 504

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + ++HG+M   +K+ VM  FKN    +L++TTVIEVG++V +A+++IIENAE FGLAQLH
Sbjct: 505 LGLLHGKMKSSEKDEVMGLFKNKEIDILVSTTVIEVGVNVPNATLMIIENAERFGLAQLH 564

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG   S C+L+Y    +     R+++++ T DGF I+E+DL+ R  GE  G +
Sbjct: 565 QLRGRVGRGSHKSYCVLIYDSK-TDVCRQRMAIMEETNDGFKISEKDLEIRGPGEFFGTR 623

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           Q G+P+  +A    H  +L++A+++A++IL +D +L
Sbjct: 624 QHGLPELKVANLFKHIKILKLAQQEARYILGEDNNL 659


>gi|254414435|ref|ZP_05028201.1| ATP-dependent DNA helicase RecG [Microcoleus chthonoplastes PCC
           7420]
 gi|196178665|gb|EDX73663.1| ATP-dependent DNA helicase RecG [Microcoleus chthonoplastes PCC
           7420]
          Length = 826

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/687 (34%), Positives = 393/687 (57%), Gaps = 29/687 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PLS    +G++ S +L ++         R  D+L+Y+P   ID   +  + ++    
Sbjct: 129 LDSPLSELPDIGRRRSDYLGRL----GVYTVR--DMLYYYPRDHIDYARQVNVKDLVAGE 182

Query: 69  IVTITGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKT--------EMLKNVF 117
            VT+ G + + + F   + +    +++L+ D TG++ L  F+           E  K  +
Sbjct: 183 TVTVVGTVKRCNCFTSPRNKKLSIFELLIKDSTGQLKLNRFFAGNRFSHRGWQEQQKRRY 242

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPH-----YIFHNSQDVNFPLIEAVYSLPTGLSVDLFK 172
             G  +  +G +KK K  I +  P      ++  +   +    +  VY L  G+  D  +
Sbjct: 243 PAGAIVAASGLVKKNKYGITLDTPEIEVLDHLGGSIDSLKIGRVMPVYPLTEGVPADWVR 302

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           + ++ AL  +  L E + K + Q+     +++A   +H P    D +  S AR RL +DE
Sbjct: 303 QAVMAALPAVNQLQEPLPKGMRQQYDLMGVSDAIANLHFP---TDTDTLSRARRRLVFDE 359

Query: 233 LLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
               Q+  L  RK Q + +    +   GK+  +  + +PF  T +Q+  + DIL D+ Q 
Sbjct: 360 FFYLQLGFLQRRKMQQQVQSSAILAPTGKLIDRFYQLLPFELTSAQKRVVNDILNDLQQP 419

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVGSGKT+VA+IA+ AA+++G QA +MAP  +LA+QHY  +  +     + 
Sbjct: 420 TPMNRLVQGDVGSGKTVVAVIAILAAIQSGYQAALMAPTEVLAEQHYRKLVSWFNLLHLP 479

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++TG++    RR+   ++  G+  +++GTHAL QD + + +L LV++DEQHRFGV+QR
Sbjct: 480 VELLTGSVKVKKRREIHSQLETGELPLLVGTHALIQDPVNFQRLGLVVIDEQHRFGVEQR 539

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            +L QK  +PHVL +TATPIPRTL LT  GD+D+S+I E P GR+ I T ++        
Sbjct: 540 AQLQQKGQSPHVLTLTATPIPRTLALTLHGDLDVSQIDELPPGRQNIHTSVLTGKERQNA 599

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDID 529
            + ++  +++G++ Y + P IEE ++ + RS VE    L E       + ++HGRMS  +
Sbjct: 600 YDLMRREIAQGRQVYIVLPLIEESEKLDVRSAVEEHQRLSESIFPQFQVGLLHGRMSSAE 659

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+  +++F++   +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   
Sbjct: 660 KDEALNAFRDNQTQIIVSTTVIEVGVDVPNATVMMIENAERFGLSQLHQLRGRVGRGSHQ 719

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+     +  +  RL VL+ ++DGF I+E D++ R  GE+LG +QSG+  F +A  
Sbjct: 720 SYCLLMSGSK-TDTARQRLGVLEQSQDGFFISEMDMRFRGPGEVLGRRQSGLADFALASL 778

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSV 676
                +L +AR  A+ I+ +D  L ++
Sbjct: 779 VEDQEVLNLARDAAEKIVLEDKALENL 805


>gi|291612783|ref|YP_003522940.1| ATP-dependent DNA helicase RecG [Sideroxydans lithotrophicus ES-1]
 gi|291582895|gb|ADE10553.1| ATP-dependent DNA helicase RecG [Sideroxydans lithotrophicus ES-1]
          Length = 673

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 244/639 (38%), Positives = 366/639 (57%), Gaps = 18/639 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ + P  + D     +I+++       + G I  HS    + RR     L D +G + 
Sbjct: 23  DLVLHLPLRYEDETRITRIADLKPGESAQVEGEII-HSEVMYRPRRSLVCQLQDDSGILY 81

Query: 103 LLF--FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA-- 158
           L F  FY   +    V   G++I   G+ +       MVHP          + PL +A  
Sbjct: 82  LRFLNFYPSQQKQLAV---GKRIRALGEPRMGFFGDEMVHPKCRVAGE---SVPLKQALT 135

Query: 159 -VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            VY    GL      K I  AL+ LP L + + + +LQ+   P  A +  ++H P    D
Sbjct: 136 PVYPTTAGLPQATLTKHIHAALNELP-LDDTLPQKILQRLHLPEFAASVRLLHQPPPDID 194

Query: 218 ----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                E   PA  R+ +DELLA Q+++ +  ++  + +   +    ++   +L+++PF+ 
Sbjct: 195 EDALLERAHPAWMRIKFDELLAQQLSMRVHYRERSRRVAPGLAAHNRLTDALLQDLPFAL 254

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q+    +I  D+++ + M R+LQGDVGSGKT+VA +A   A+E G Q   MAP  IL
Sbjct: 255 TGAQKKVWHEISTDLARPHPMQRLLQGDVGSGKTVVAALAALQAIENGYQVAFMAPTEIL 314

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QHY  ++ +     I    ++G++ +  +  A ERIA G   + IGTHALFQ+S++++
Sbjct: 315 AEQHYLKLRDWLVPLGITPVWLSGSLKKKDKTAAAERIAQGDTMLAIGTHALFQNSVEFH 374

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           KL LVIVDEQH+FGVQQRL L  K   PH L+M+ATPIPRTL ++   D+D+S I E P 
Sbjct: 375 KLGLVIVDEQHKFGVQQRLALRGKGAEPHQLMMSATPIPRTLAMSYYADLDVSVIDELPP 434

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GR PI T ++   R +EV ER++    EG++AYW+CP I+E +    ++ +E F +L + 
Sbjct: 435 GRTPIVTKLVSDARREEVFERVRAACLEGRQAYWVCPLIDESEALQLQTALETFATLTQI 494

Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           F    I + HG++S  +K   M +FK G  +LL+ATTVIEVG+DV +AS+++I++AE  G
Sbjct: 495 FPDLRIGLAHGKLSSTEKAETMAAFKAGELQLLVATTVIEVGVDVPNASLMVIDHAERMG 554

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL ++    DGF IA++DL+ R  GE
Sbjct: 555 LAQLHQLRGRVGRGAAESLCVLLFQQPLSELARARLKIIFENTDGFEIAQQDLRLRGPGE 614

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           +LG +QSG+P    A     D LL+ AR  A  +L   P
Sbjct: 615 LLGARQSGVPMLRFADLAEDDKLLDKARDIADEMLRDFP 653


>gi|78049064|ref|YP_365239.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037494|emb|CAJ25239.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 717

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/708 (35%), Positives = 384/708 (54%), Gaps = 52/708 (7%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           PS      A LS+  GVG K +  F ++ I           DL  + P  + DR     I
Sbjct: 9   PSLAVAGQARLSSLPGVGPKVADKFAARGI-------LSVQDLWLHLPLRYEDRTRLTTI 61

Query: 62  SEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118
           +++       + G +      F+    RP  ++ ++D + G + L FF+ +   +   F 
Sbjct: 62  AQLQGGVPAQVEGRVEAVERGFRF---RPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FA 117

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176
            G ++ V G  K  ++   +VHP Y +    +D      ++ VY +  G+     +K+I 
Sbjct: 118 VGTRLRVFGTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177

Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225
           +AL RLP       + P W     LQ +  PS+  A   +H P    D         PA+
Sbjct: 178 QALERLPPESALELLPPHW-----LQDERLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQ 232

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +RLA +ELLA Q++L   R   ++     +   G + Q++ + +PF  T +Q+   + I 
Sbjct: 233 QRLAIEELLAHQLSLRRQRIALQRLHAPSLPGNGTLVQQLCKALPFQLTGAQQRVFEQIA 292

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D++  + MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + 
Sbjct: 293 HDLAHPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLTNLRGWL 352

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +   I +  + G +    R   +  +A GQA +++GTHAL Q+++ ++ L L I+DEQHR
Sbjct: 353 EPLGIRIVWLAGKVTGKARAAVMAEVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHR 412

Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           FGV QRL L  K  A    PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+
Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSAYADLDVSAIDELPPGRTPVQTI 472

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------------FRSVVERF 507
           ++   R  E++ER++   +EG++AYW+C  IEE +E                 ++    F
Sbjct: 473 VLSAERRPELVERIRAACAEGRQAYWVCTLIEESEEPEKGAQGQQGGPPRIEAQAAEVTF 532

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +L        +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIE
Sbjct: 533 EALSAQLPGVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIE 592

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           NAE  GLAQLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+
Sbjct: 593 NAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLE 652

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            R  GE+LG +Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 653 LRGPGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLDEAPEIA 700


>gi|93007226|ref|YP_581663.1| ATP-dependent DNA helicase RecG [Psychrobacter cryohalolentis K5]
 gi|92394904|gb|ABE76179.1| ATP-dependent DNA helicase RecG [Psychrobacter cryohalolentis K5]
          Length = 782

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/485 (44%), Positives = 302/485 (62%), Gaps = 15/485 (3%)

Query: 201 SIAEAFNIIHNPRKAKDF-----------EWTSPARERLAYDELLAGQIALLLMRKQFKK 249
           +I EA  ++H P    D              T  A +RL  +EL A Q++LL  R+Q  +
Sbjct: 276 TIFEALVLLHTPPTYTDAGQQYKLLTQLSARTHAACQRLIIEELTAHQLSLLYRRQQLHQ 335

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                  ++  +A K+   +PF  T +Q+  ++DI  DM+    MLR++QGDVG+GKTLV
Sbjct: 336 YKAPKCAIQSPLADKLFGALPFDLTGAQKRVMRDITADMATSIPMLRLVQGDVGAGKTLV 395

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A  A   A+++G Q  +MAP  ILA+QH    K + +   I V  + G      RR+ALE
Sbjct: 396 AAGAAGYALDSGWQVAVMAPTEILAEQHLVNFKNWFEPLGIGVGWLAGKQTAKQRREALE 455

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLM 426
            ++     +++GTHALFQD +Q+ KL LVI+DEQHRFGV+QR+ LT K  A   PH L+M
Sbjct: 456 AVSENTVQVVVGTHALFQDQVQFAKLGLVIIDEQHRFGVEQRMALTNKGVAGSTPHQLIM 515

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL ++  GD+D S I E P GR PI TV I  NR DEVIER+ V    G++AY
Sbjct: 516 TATPIPRTLAMSVYGDMDTSIIDELPPGRTPITTVTIDRNRRDEVIERIAVNCEAGRQAY 575

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           W+C  +EE    + ++    +  L E     I ++HG+M   DK+++M +FK G   LLI
Sbjct: 576 WVCSLVEESSVLDAQAAEATYEDLSERLDIRIGLVHGKMKGADKQAIMQAFKAGQLDLLI 635

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG+DV +AS+++IENAE  GL+QLHQLRGRVGRG   S C+LLY  PLS+    
Sbjct: 636 ATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRVGRGSTKSYCVLLYQKPLSETGTE 695

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL+VL+++ DGF+IA++DL+ R  GE+LG +Q+G   + +A     + L  IA++ AKH+
Sbjct: 696 RLNVLRDSTDGFVIAQKDLELRGPGELLGKRQTGNVGYYLADLIRDEQLFAIAQRLAKHL 755

Query: 667 LTQDP 671
           +  DP
Sbjct: 756 IA-DP 759



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 28/191 (14%)

Query: 3   PSFLNP----------LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSF 52
           P+ +NP          L  P++   GVG K +  L+++         R  DLL + P  +
Sbjct: 2   PTSVNPATPHLLDVLALDMPVTALAGVGPKVAEQLAQL------GIARIFDLLLHLPRDY 55

Query: 53  IDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF--YRKT 110
            DR     I +++  +   ITG +    +     R    ++++D TG I+L FF  YR  
Sbjct: 56  EDRSRLVSIGDVAHGQAAMITGRVVHVDT----NRSGMTVIVDDDTGTISLRFFKVYRG- 110

Query: 111 EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSV 168
             L      G  + + G++K  +    + HP Y  I  N   VN  L + +Y    GL  
Sbjct: 111 --LAQTMCLGTHLQLFGEVKVSRYGKQIHHPEYQIISSNETVVNTGL-QPIYPSVKGLHQ 167

Query: 169 DLFKKIIVEAL 179
           +  + +I  AL
Sbjct: 168 NKLRTLIKLAL 178


>gi|288553101|ref|YP_003425036.1| ATP-dependent DNA helicase RecG [Bacillus pseudofirmus OF4]
 gi|288544261|gb|ADC48144.1| ATP-dependent DNA helicase RecG [Bacillus pseudofirmus OF4]
          Length = 682

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 247/667 (37%), Positives = 386/667 (57%), Gaps = 29/667 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG++ +  ++ +      N     DL+ + P  + D   +       +ER VT
Sbjct: 8   PVTEVKGVGEETAKQMAGM------NVHTVQDLIEHFPFRYEDYQLKDLQDTKHDER-VT 60

Query: 72  ITGYISQHSSFQL----QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           + G +    S +     + R   ++L+N     IT+ FF R    LK  F  G+++TVTG
Sbjct: 61  VVGVVQSEPSIRYYGKKKNRLSVRLLVNQIL--ITVTFFNRA--FLKKYFQIGQEVTVTG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLP 186
           K  + +  I     +      +    P    VYS+   L+    KK I +A+ +    +P
Sbjct: 117 KWDQHRMTIAGSECYPGRVEKEQTIVP----VYSVSGKLTSKSLKKYIYQAMQQYGEDIP 172

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245
           E + +  L+K   P+  EA   +H P K    E T  AR R+ Y+E L  Q+ +   RK 
Sbjct: 173 EVLPESFLEKYKLPTKREAIYRLHYPSKD---EATKHARRRMVYEEFLFFQLKMQAYRKI 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             ++ +G+P+ ++    +  +  +PF  T +Q+  +KDIL D+    RM R+LQGDVGSG
Sbjct: 230 NREQSVGVPLMLDRNKVRDFVSGLPFPLTGAQKRVVKDILHDIESDYRMNRLLQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA + M A V+AG QA +M P  ILA+QH   +K   +   I VE+++G++    RR
Sbjct: 290 KTIVAAVCMYAVVQAGKQAALMVPTEILAEQHVSSLKPLLEPFGIEVELLSGSVKGKKRR 349

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LER+  G+ HI +GTHAL Q+ + ++ L LVI DEQHRFGV+QR  L  K   P VL 
Sbjct: 350 ERLERLESGEMHIAVGTHALIQEDVIFHDLGLVITDEQHRFGVEQRRVLRDKGEHPDVLF 409

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL ++  GD+D+S I E PAGRK I+T     + +D V+  ++  L  G++A
Sbjct: 410 MTATPIPRTLAISVFGDMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFIEKELQAGRQA 469

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP IEE +  + ++ ++    L +H+     + ++HGR+   +K+ VM++F   + +
Sbjct: 470 YVICPLIEESESLDVQNAIDVHAILQQHYGGKFKVGLMHGRLHPKEKDEVMEAFSENSTQ 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRGE  S CILL  P  S+ 
Sbjct: 530 ILVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGEAQSYCILLADPK-SEV 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662
              R+ ++  T DGF+++E DL+ R  G+  G KQSG+P F +A   +HD   LE+AR+D
Sbjct: 589 GKERMRIMTETNDGFVLSERDLELRGPGDFFGSKQSGLPNFKVADV-VHDYRALEVARQD 647

Query: 663 AKHILTQ 669
           A  ++ +
Sbjct: 648 AAELVNK 654


>gi|126441636|ref|YP_001060336.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 668]
 gi|126221129|gb|ABN84635.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 668]
          Length = 902

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 246/662 (37%), Positives = 372/662 (56%), Gaps = 29/662 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 229 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 288

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +A
Sbjct: 289 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 344

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+P
Sbjct: 345 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 404

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263
               D     + T PA  R+ +DELLA Q++L    ++ +  +   +    +     ++ 
Sbjct: 405 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRVAPAMPRRARDDGAALSA 464

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 465 RLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 524

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTH
Sbjct: 525 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 584

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRT
Sbjct: 585 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 644

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE
Sbjct: 645 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 704

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 705 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 764

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ 
Sbjct: 765 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 824

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++
Sbjct: 825 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEV 884

Query: 674 TS 675
            +
Sbjct: 885 VA 886


>gi|206561640|ref|YP_002232405.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia J2315]
 gi|198037682|emb|CAR53625.1| putative ATP-dependent DNA helicase [Burkholderia cenocepacia
           J2315]
          Length = 743

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 241/660 (36%), Positives = 367/660 (55%), Gaps = 25/660 (3%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I E+    I    G +  +     + RR   + + D  
Sbjct: 70  TRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFDNE-VAYRPRRQLVVKIRDDD 128

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157
           GE  +L F             G+++ V G ++     + MVHP      + D   P ++ 
Sbjct: 129 GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVLT 187

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            VY    G+S    +K I  A+ R P+   LP  I++D L+    P++ +A  I+H+PR 
Sbjct: 188 PVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIQRDYLKPLDVPTLEQAVRILHHPRV 247

Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG--IPINVE---GKIAQKI 265
             D     + + PA  R+ ++ELLA Q++L    ++ +      +P         +  ++
Sbjct: 248 DSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRTARDADALTTRL 307

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT+VA +A   A++AG QA 
Sbjct: 308 YAALPFTLTGAQARVVDEIAHDLTLAHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQAA 367

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTHA+
Sbjct: 368 LMAPTEILAEQHARKLRAWLEPLGVTVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAI 427

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLV 436
            QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL 
Sbjct: 428 IQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLA 487

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +T   D+++S I E P GR P+ T ++   R DEVI R++     G++ YW+CP IEE +
Sbjct: 488 MTYYADLEVSTIDELPPGRTPVLTRVVGDARRDEVIARVREAALTGRQVYWVCPLIEESE 547

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
               ++ VE + +L        + ++HGR+S  DK +VM++F     +LL+ATTVIEVG+
Sbjct: 548 TLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMEAFTRNEVQLLVATTVIEVGV 607

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL  ++ T 
Sbjct: 608 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYSGPLSLTGRERLKTMRETT 667

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           DGF IA  DL+ R  GE LG +QSG      A  E    L++ AR+ A  ++   P++ +
Sbjct: 668 DGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPAREAAARLIAAYPEVVT 727


>gi|146309754|ref|YP_001174828.1| ATP-dependent DNA helicase RecG [Enterobacter sp. 638]
 gi|145316630|gb|ABP58777.1| ATP-dependent DNA helicase RecG [Enterobacter sp. 638]
          Length = 693

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/671 (37%), Positives = 371/671 (55%), Gaps = 28/671 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR     I ++      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTQLYAIGDLLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I  + +     RR     ++DG+G +TL FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEIL-NCNVTFGGRRMMTCQISDGSGILTLRFFNFSAAM-KNGLAAGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--L 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKFGAEMIHPEYRVQG--DLSTPELQETLTPVYPTTEGIKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P  +    D E    PA+ RL  +ELLA  +++L
Sbjct: 180 TELLPPELAQ--GMMSLPEAIRTLHRPPPSLQLSDLESGQHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++   +P+     +  K+L ++PF PT +Q     +I  D++Q   M+R++QGD
Sbjct: 238 ALRAGAQRFHALPLTARDDLKDKLLASLPFKPTHAQARVTAEIEHDLAQDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRSWFAPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R    E IA G   +I+GTHA+FQ+ +++  L LVI+DEQHRFGV QRL L +K    
Sbjct: 358 KARIAQQEAIASGLVQMIVGTHAIFQEQVKFKGLALVIIDEQHRFGVHQRLALWEKGLQQ 417

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK- 476
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++I+R++ 
Sbjct: 418 GFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRRSDIIDRVRN 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
               EG++AYW+C  IEE +    ++    +  L        I ++HGRM   DK+ VM 
Sbjct: 478 ACTQEGRQAYWVCTLIEESELLEAQAAEVTWEDLKLALPELQIGLVHGRMKSADKQQVMQ 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   LLIATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 538 RFKQGELHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           +  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 598 FKSPLSKTAQMRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 657

Query: 656 LEIARKDAKHI 666
           +   ++ A+HI
Sbjct: 658 IPEVQRLARHI 668


>gi|90415469|ref|ZP_01223403.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2207]
 gi|90332792|gb|EAS47962.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2207]
          Length = 705

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 246/656 (37%), Positives = 362/656 (55%), Gaps = 32/656 (4%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            RGVG   S  L K+            DLLF+ P  +IDR     I  +     V I G 
Sbjct: 14  LRGVGPLLSAKLQKL------GLYTIQDLLFHLPLRYIDRTKITAIGGVQPLTEVVIEGE 67

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           + + S     +RR     + D +G ITL FF+   +  +     G K+   G++++ K+ 
Sbjct: 68  V-RGSDVVFGRRRSLVCRVQDHSGLITLRFFH-FNQAQQQGLQPGTKVRCFGEVRRGKSG 125

Query: 136 IIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEK 191
           + M HP Y + + SQ       +  +Y    G++    + +  +AL  L    + +W+  
Sbjct: 126 LEMYHPEYQLLNQSQPPALAETLTPIYPATEGVTQQRIRDLCGQALKLLEQQGIEDWMPA 185

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQF 247
            L    S   + +A +++HNP          E   PA++RLA +EL+A  ++LL +R++ 
Sbjct: 186 ALNNGSSNYCLVDALHLLHNPPPGTALNLLAEGEHPAQQRLASEELVAHHLSLLRLRQKI 245

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           + +    +       ++ L  +PF+ T +Q+    +I  D+SQ   MLR++QGDVGSGKT
Sbjct: 246 QHQAAPALLPNQSATERFLAQLPFTLTGAQQRVTNEISADISQPIPMLRLIQGDVGSGKT 305

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +    AV  G QA +MAP  ILA+QH    + +     I +  +TG      R   
Sbjct: 306 VVAALGAVQAVANGMQAALMAPTEILAEQHRVNFESWLAPLGIRIAWLTGKFKGKGREVQ 365

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK---------- 417
           L  IA G A I+IGTHALFQ+++ ++ L L I+DEQHRFGV QRL L +K          
Sbjct: 366 LAAIADGSAQIVIGTHALFQEAVAFHNLGLTIIDEQHRFGVHQRLALRKKGAVIDAQIDE 425

Query: 418 -----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
                A+ PH L+MTATPIPRTL +++  D+D S I E P GRKPI+TV++   R ++VI
Sbjct: 426 EGYGEASTPHQLIMTATPIPRTLAMSAYADLDCSVIDELPPGRKPIETVVLNDLRRNDVI 485

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
           ER++    +G++AYW+C  IEE        +              SI +IHGR+   +K 
Sbjct: 486 ERVRASCQDGRQAYWVCTLIEESDVLEAQAAEATAQELQLLLSELSIGLIHGRLKPKEKV 545

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            +M +FK G   LL+ATTVIE+G+DV +AS++IIEN+E  GL+QLHQLRGRVGRG + S 
Sbjct: 546 QIMQAFKAGEINLLVATTVIEIGVDVPNASLMIIENSERLGLSQLHQLRGRVGRGTQSSH 605

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           C+LLY  PLS N   RL +++ T DGF IAE+DL+ R  GE+LG +Q+G  +F IA
Sbjct: 606 CVLLYSAPLSGNGAARLKIMRETNDGFKIAEKDLEIRGPGEVLGTRQTGDMQFRIA 661


>gi|91202709|emb|CAJ72348.1| similar to DNA helicase [Candidatus Kuenenia stuttgartiensis]
          Length = 686

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/680 (37%), Positives = 381/680 (56%), Gaps = 19/680 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+    G+G K S    KII  G        DLL+Y P  + D     KI+E     
Sbjct: 5   LLQPVQYLNGIGPKRS----KII--GRLGIQTVHDLLYYFPRDYNDFSKIQKIAEAKTGD 58

Query: 69  IVTITGYISQ-HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            +TI G I+   +      +   ++ ++D TG I   +F      L N F  G ++ + G
Sbjct: 59  SITIQGTINGIQNRVARMGKTILEVFVSDETGVIAATWF--NQPFLVNKFRIGDRLFLHG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSR-LPVL 185
           K+   K   ++   + I  + Q       I  VY L   +S    +KII  A+   + +L
Sbjct: 117 KVNSYKYLQLLSPEYEIISDRQAGGSGWGIIPVYPLTEHISQSQLRKIIHAAIQEYVDLL 176

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            + +   L++K +F  +A+A   IH+P      E  + A+ RL Y+EL   ++A+ L R 
Sbjct: 177 EDALPLPLIKKYNFLPVADAIRHIHSP---PSMELLNRAKNRLVYEELFCLEMAMALRRY 233

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + K E  IP      +   I   IPF+ TK+QE  I +I +DM     M R+LQGDVGSG
Sbjct: 234 RIKGETRIPFKAGANVDAHIRNIIPFTLTKAQERVIYEIREDMKSDKPMNRLLQGDVGSG 293

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VAL A   AV  G QA  MAP  +LAQQH+  ++K+   +Q+ V ++TG+    H++
Sbjct: 294 KTVVALYAALIAVANGYQATFMAPTELLAQQHFRTLQKFLSGSQVRVCLLTGSGNATHKK 353

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
             + +++ G   +I+GTHA+ ++S+ + KL LV++DEQH+FGV QRLKL +K  +P VL+
Sbjct: 354 NVIAQVSDGGIDLIVGTHAIIEESVSFKKLGLVVIDEQHKFGVLQRLKLRKKGASPDVLI 413

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL LT  GD+DIS + E P GR P+KT  +  N+     + ++  +S+GK+ 
Sbjct: 414 MTATPIPRTLSLTLFGDMDISMLDEMPPGRIPVKTFWVSKNKEKAAYDFIRGEISKGKQV 473

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           + + P +E  ++ + +S +     L         + ++HG+M   +KE  M  FK     
Sbjct: 474 FVVYPLVEHSEKLDLKSAITEAERLRNEIFPECKVGLLHGKMKSAEKEQAMADFKERRYD 533

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++T +IEVGIDV +A+I++IE+AE FGLAQLHQLRGR+GRG + S C LL+  P +  
Sbjct: 534 ILVSTIIIEVGIDVPNATIMVIEHAERFGLAQLHQLRGRIGRGGKQSYC-LLFGTPKTAL 592

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662
           S  RL  + NT DGF IAE D + R  GE  G +Q G+P+  I+    HD SLL+ ARKD
Sbjct: 593 SRDRLRTMVNTSDGFKIAEMDFRLRGPGEFFGTRQHGLPELKISNI-FHDFSLLQKARKD 651

Query: 663 AKHILTQDPDLTSVRGQSIR 682
           A  I+ +DP L++   Q I+
Sbjct: 652 AFEIVCRDPSLSAEEHQKIK 671


>gi|332708716|ref|ZP_08428688.1| ATP-dependent DNA helicase RecG [Lyngbya majuscula 3L]
 gi|332352570|gb|EGJ32138.1| ATP-dependent DNA helicase RecG [Lyngbya majuscula 3L]
          Length = 828

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 241/681 (35%), Positives = 392/681 (57%), Gaps = 35/681 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+    VG K S +L+++      ++ R  DLL+Y+P   I+   +  ++++     VT
Sbjct: 134 PLAKLAAVGSKNSEYLARL----GLHKVR--DLLYYYPRDHINYARQVNMADLVPGETVT 187

Query: 72  ITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFY-------RKTE-MLKNVFFEG 120
           I G + + + F   + +   IL   L D TG+I L  F+       R  +   K  +  G
Sbjct: 188 IMGTVKRCNCFSSPRNKKLTILDIVLKDSTGQIKLSRFFAGFRYSNRSWQYQQKRRYPVG 247

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVN---FPLIEAVYSLPTGLSVDLFKKII 175
             +  +G +KK K  I +  P    + H    ++      +  VYSL  G+  D+ ++ I
Sbjct: 248 AVVAASGLVKKNKYGITLEDPELEVLEHPGGTIDSMKIGRVVPVYSLTEGVPADMVRRAI 307

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           + AL    ++ E +     ++     + +A   IH P+ A      + AR RL +DE L 
Sbjct: 308 IAALPYTSLIKEPLPVTFRKEYGLMGVCDAIANIHFPQNADTL---ADARRRLVFDEFLY 364

Query: 236 GQIALLLMRKQFKK----EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            Q+  L  R+  +K     +  PI   GK+  +  + +PF  T +Q   I +IL+DM  +
Sbjct: 365 LQLGFLQRRQAQRKTQSSAVMAPI---GKLFDQFNQLLPFELTGAQTRVINEILKDMESE 421

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVGSGKT+VA+ A+ AA+++G QA +MAP  +LA+QHY  +  +     + 
Sbjct: 422 TPMNRLVQGDVGSGKTIVAVYAIIAAIQSGYQAALMAPTEVLAEQHYRKLVNWFNLLHLP 481

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++TG+   + RRK   ++  G+  +++GTHAL QD + +  L LV++DEQHRFGV+QR
Sbjct: 482 VELLTGSTKVSKRRKIHSQLETGELPLLVGTHALIQDPVNFNNLGLVVIDEQHRFGVKQR 541

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            +L QK  +PHVL +TATPIPRTL LT  GD+D+S+I E P GR+ I+T ++        
Sbjct: 542 ARLQQKGQSPHVLTLTATPIPRTLALTLHGDLDVSQIDELPPGRQKIQTTVLRGKERKHA 601

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDID 529
            + ++  +++G++AY + P IEE  + + RSV+E    L E       + ++HGRM+  D
Sbjct: 602 YDLIRREVAQGRQAYMVLPLIEESNKLDLRSVIEEHKRLSESIFPEFKVGLLHGRMNSAD 661

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+  + +F++   +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG + 
Sbjct: 662 KDKALSAFRDNKSQIIVSTTVIEVGVDVPNATVMMIENAERFGLSQLHQLRGRVGRGSDK 721

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+     ++ +  RL VL+ ++DGF I+E D++ R  GE+LG +QSG+  F +A  
Sbjct: 722 SYCLLVSGSN-TETARQRLGVLEQSQDGFFISEMDMRFRGPGEVLGKRQSGLADFALASL 780

Query: 650 ELHDSLLEIARKDAKHILTQD 670
                +L +AR  A+ I+ QD
Sbjct: 781 VEDQEVLNLARDAAEKIILQD 801


>gi|254423977|ref|ZP_05037695.1| ATP-dependent DNA helicase RecG [Synechococcus sp. PCC 7335]
 gi|196191466|gb|EDX86430.1| ATP-dependent DNA helicase RecG [Synechococcus sp. PCC 7335]
          Length = 872

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/690 (34%), Positives = 393/690 (56%), Gaps = 29/690 (4%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP   +PL  PL+  RG+G   +  L+K+            D+LFY+P  +ID   + KI
Sbjct: 164 RPDSTHPLDKPLTYLRGIGAHKAEKLAKL------GLLSLRDVLFYYPRDYIDYARQVKI 217

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKT-------- 110
            ++     VT+   + + S F   +      +++ + D T  + +  F   T        
Sbjct: 218 KDLVPGETVTLVATVKKCSCFNSPRNSKLTIFEMTVYDATSRLKISRFLAGTHFRSRGWQ 277

Query: 111 EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD-----VNFPLIEAVYSLPTG 165
           E  K ++  G  + ++G +K+ K  I +  P        D     +    +  VY L  G
Sbjct: 278 ERQKRLYPPGAVVAISGLVKQTKYGINIDSPEIEVLGGPDEAIASLTVGRVVPVYPLTEG 337

Query: 166 LSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225
           +  D+ +K +V AL  +  L + +   L QK     +A A   IH P      E  + AR
Sbjct: 338 VGADIVRKAVVAALPAVVELRDPLPSALRQKYELVELAAAIAHIHFPPST---EALAVAR 394

Query: 226 ERLAYDELLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
            RL +DE    Q+ LL  R   ++    + +   G++ +   + +PF  T +Q+   ++I
Sbjct: 395 RRLVFDEFFYLQLGLLRRRAAQQQAQTSVQVAPTGQLIEAFYKVLPFQFTNAQQRVAQEI 454

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
           L D+ +   M R++QGDVGSGKT+VA++ + AA++AG QA +MAP  +LA+QHY  + ++
Sbjct: 455 LNDLQKTAPMNRLVQGDVGSGKTVVAVVGILAAIQAGYQAALMAPTEVLAEQHYRKLVEW 514

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                + VE++TG+   A RR+    +  G+  +++GTHAL +D +Q++ L LV +DEQH
Sbjct: 515 FNLLHLPVELLTGSTRAAKRRQIHSELLTGELPVLVGTHALIEDPVQFHNLGLVTIDEQH 574

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           RFGV QR KL QK   PHVL +TATPIPRTL LT  GD+D+S+I E P GRK +KT ++ 
Sbjct: 575 RFGVAQRAKLQQKGDNPHVLTLTATPIPRTLALTIHGDLDVSQIDELPPGRKAVKTTVLG 634

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIH 522
                +  + ++  + +G++ Y + P +EE ++ + RS +E  + L E       + ++H
Sbjct: 635 AKERSDAYDLIRREIVQGRQVYIVLPLVEESEKLDLRSAIEEGDRLQETIFPDFQVGLLH 694

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GRMS +DK++ + +F++ T ++L++TTV+EVG+D+ +A++++IE+AE FGL+QLHQLRGR
Sbjct: 695 GRMSSVDKDAAISAFRDQTTQILVSTTVVEVGVDIPNATVMLIEHAERFGLSQLHQLRGR 754

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG + S C+L+ +   S  +  RL V++ ++DGF I+E D++ R  G++LG +QSG+P
Sbjct: 755 VGRGGDQSFCLLMTNSK-SDVAMQRLRVMEQSQDGFFISEMDMRFRGPGQVLGTRQSGLP 813

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            F +A       +LE+AR  A ++L Q+ +
Sbjct: 814 DFALASLVEDQDVLELARTAAGNVLAQESE 843


>gi|217420629|ref|ZP_03452134.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 576]
 gi|217396041|gb|EEC36058.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 576]
          Length = 902

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 249/663 (37%), Positives = 372/663 (56%), Gaps = 31/663 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +   S    + RR   + L D  
Sbjct: 229 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-SEIAYRPRRQLLVKLRDDD 287

Query: 99  G-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
           G E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +
Sbjct: 288 GAELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQ 343

Query: 158 A---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHN 211
           A   VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+
Sbjct: 344 ALTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHH 403

Query: 212 PRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IA 262
           P    D     + T PA  R+ +DELLA Q++L    ++ +      +    +     ++
Sbjct: 404 PGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALS 463

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG 
Sbjct: 464 ARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGY 523

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGT
Sbjct: 524 QAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGT 583

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPR 433
           HA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPR
Sbjct: 584 HAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPR 643

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IE
Sbjct: 644 TLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIE 703

Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIE
Sbjct: 704 ESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIE 763

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++
Sbjct: 764 VGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMR 823

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P+
Sbjct: 824 ETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPE 883

Query: 673 LTS 675
           + +
Sbjct: 884 VVA 886


>gi|94311874|ref|YP_585084.1| ATP-dependent DNA helicase RecG [Cupriavidus metallidurans CH34]
 gi|93355726|gb|ABF09815.1| ATP-dependent DNA helicase [Cupriavidus metallidurans CH34]
          Length = 737

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/663 (36%), Positives = 366/663 (55%), Gaps = 33/663 (4%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRRPYKILLND 96
           R +DL+ + P  + D      I +      + +   I      +    + RR   + + D
Sbjct: 59  RSVDLVLHLPLRYEDETTLEPIRDAIHRAGIGLPAQIEGEVISNEVTFRPRRQLVVKVAD 118

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156
            TGE+TL F        K    EG ++ V G+I+       MVHP        +     +
Sbjct: 119 ETGELTLRFLNFYGGQTKQ-MAEGTRLRVRGEIRGGFFGAEMVHPTVRAVTPGEPLPDRL 177

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP- 212
             VY    G+S    +K I  A+ R P+   LP+ + +  L +   P + +   ++HNP 
Sbjct: 178 TPVYPATAGISQAYLRKAIGGAMQRTPMPETLPQAVLRGPLAQLKLPPLIDCLRLLHNPP 237

Query: 213 ---RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-KKEIGIPI--NVEGKIAQKIL 266
               +A   + + PA  R+ +DELLA QI+L   R Q  +KE   P      G +    L
Sbjct: 238 QQESEAALADRSHPAWVRIKFDELLAQQISL--RRSQAARKEKNAPSMPRRAGGLLTSFL 295

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             +PF  T +Q+  +++I  DM++ + M R+LQGDVGSGKT+VA +A   A++AG QA +
Sbjct: 296 GALPFRLTGAQQRVVEEIAADMARPHPMHRLLQGDVGSGKTIVAALAACQAIDAGYQAAL 355

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  ILA+QH+  +  + +   + V  + G++    +R+A+ R   G+A ++IGTHAL 
Sbjct: 356 MAPTEILAEQHFRKLSAWLEPLGVPVVWLAGSLKAKEKREAVARAESGEAKLVIGTHALI 415

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------------TAPHVLLMTATP 430
           QD++++ +L L +VDEQHRFGV QRL L  KA                  PH L+M+ATP
Sbjct: 416 QDTVRFARLGLAVVDEQHRFGVAQRLALRGKAGEADQPGEPARPAEEKVVPHQLMMSATP 475

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +T   D+D+S I E P GR PI T ++   R DEVIER+    +EG++ YW+CP
Sbjct: 476 IPRTLAMTYYADLDVSVIDELPPGRTPIVTRLVNDARRDEVIERVHHAAAEGRQVYWVCP 535

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            IEE +    ++ VE + +L        + ++HGR+   +K +VMD F     ++L+ATT
Sbjct: 536 LIEESEALQLQTAVETYETLVAALPDLRVGLVHGRLPPAEKAAVMDDFTANRLQVLVATT 595

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS  +  RL+
Sbjct: 596 VIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAESVCLLMYQAPLSPTARERLA 655

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L++ A++ A+ +L +
Sbjct: 656 TMRETTDGFEIARRDLQIRGPGEFLGARQSGEAMLRFADLETDAWLVDYAQEAAELMLER 715

Query: 670 DPD 672
            P+
Sbjct: 716 YPE 718


>gi|115350668|ref|YP_772507.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria AMMD]
 gi|115280656|gb|ABI86173.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria AMMD]
          Length = 785

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 242/662 (36%), Positives = 366/662 (55%), Gaps = 29/662 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I E+    I    G +  +     + RR   + + D  
Sbjct: 112 TRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFDNE-VAYRPRRQLVVKIQDDD 170

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL--- 155
           GE  +L F             G+++ V G ++     + MVHP        +V+ PL   
Sbjct: 171 GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAV---RVVEVDAPLPQV 227

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
           +  VY    G+S    +K I  A+ R P+   LP  IE+D L+    P++A+A  I+H+P
Sbjct: 228 LTPVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIERDYLKPLGVPTLAQAVRILHHP 287

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263
               D     + + PA  R+ ++ELLA Q++L    ++ +      +          +  
Sbjct: 288 GVDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRTAPAMPRRAATDADALTT 347

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++   +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT+VA +A   A++AG Q
Sbjct: 348 RLYAALPFTLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQ 407

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTH
Sbjct: 408 AALMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTH 467

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRT
Sbjct: 468 AIIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRT 527

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+++S I E P GR P+ T ++   R +EVI R++     G++ YW+CP IEE
Sbjct: 528 LAMTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREAALTGRQVYWVCPLIEE 587

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR+S  DK +VM++F     +LL+ATTVIEV
Sbjct: 588 SETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMEAFTRNEVQLLVATTVIEV 647

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL  ++ 
Sbjct: 648 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRE 707

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  E    L++ AR  A  ++   PD+
Sbjct: 708 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAAARLIAAYPDV 767

Query: 674 TS 675
            +
Sbjct: 768 VT 769


>gi|86610232|ref|YP_478994.1| ATP-dependent DNA helicase RecG [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558774|gb|ABD03731.1| ATP-dependent DNA helicase RecG [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 837

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 245/682 (35%), Positives = 401/682 (58%), Gaps = 31/682 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL   +G+G K +  L+++      +  R  D L+Y P  ++D   R  I +      VT
Sbjct: 143 PLQFLKGIGPKSAEKLAQL----GLHSVR--DALYYFPRDYLDYSRRVLIRQAKVGETVT 196

Query: 72  ITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVFFEG 120
           + G +   S F   K     I    + D +G ITL  FY   +         L+  + +G
Sbjct: 197 LVGTVKSCSCFTSPKNPSLTIFNLKIADKSGVITLSRFYSGRQFAQRSWQASLERQYPKG 256

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVN-FPLIEAVYSLPTGLSVDLFKKIIVE 177
             +  +G +KK +  + + +P    +    ++++    I  VY L  G+  DL +K +  
Sbjct: 257 ALVAASGLVKKGRLGLTLDNPQLEVLGGEGEELDRLGKILPVYPLSEGIPADLVRKAVQL 316

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           AL    ++ + +  DL ++     +  A   IH P   +  E  + AR RL +DE    Q
Sbjct: 317 ALPAAALVEDPLPADLKRQLQLLDLPVALQQIHFP---ETRELLAQARRRLVFDEFFYLQ 373

Query: 238 IALLLMRKQFKKEI-GIP--INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           ++LL  R +++ +   IP      G++  +  + +PF  T +Q+ AI +IL D+     M
Sbjct: 374 LSLLQRRHRYRAQAQAIPRYQPARGELLDRFYQILPFQLTAAQQRAIDEILADLRDPLPM 433

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVGSGKT+VA+ A+ AA+++G QA +MAP  +LA+QHY  + ++    Q+ VE+
Sbjct: 434 NRLLQGDVGSGKTVVAVAAVLAAIQSGWQAALMAPTEVLAEQHYRKLVEWLSQLQVPVEL 493

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+ P A RR+ L ++  G+  +++GTHAL Q ++Q+  L LV++DEQHRFGV+QR  L
Sbjct: 494 LTGSTPPAKRREILRQLQTGELPLVVGTHALIQPAVQFRNLGLVVIDEQHRFGVEQRAAL 553

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEVIE 473
            QK   P VL MTATPIPRTL L   GD+D+++I E P GRKP+ T++  P +R+ +V+ 
Sbjct: 554 QQKGDHPDVLTMTATPIPRTLTLALHGDLDVTQIDELPPGRKPVHTLVARPGDRL-QVMR 612

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKE 531
            ++  +++G++AY + P IEE ++ + +S +E    L E       ++++HGR++  +KE
Sbjct: 613 LIEREIAQGRQAYVVLPLIEESEKLDLKSAIEEHQRLQEKVFPQFRVSLLHGRLTSSEKE 672

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           +V+ +F+     +L++TTV+EVG+DV +AS++++E+AE FGL+QLHQLRGRVGRG + + 
Sbjct: 673 AVIAAFRRRELDILVSTTVVEVGVDVPNASVMLVEHAERFGLSQLHQLRGRVGRGSDQAY 732

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           CIL+     S+ +  RL VL+ + DGF IAE DL+ R  GE++G +QSG+P F +A    
Sbjct: 733 CILMTGSK-SEEALRRLKVLEQSHDGFFIAEMDLRFRGPGEVMGTRQSGLPDFALASLME 791

Query: 652 HDSLLEIARKDAKHILTQDPDL 673
              +L++AR+ A+ ++ QDPDL
Sbjct: 792 DQEVLQLARQAAEQLIVQDPDL 813


>gi|30249802|ref|NP_841872.1| RecG-like helicases [Nitrosomonas europaea ATCC 19718]
 gi|30180839|emb|CAD85761.1| RecG-like helicases [Nitrosomonas europaea ATCC 19718]
          Length = 685

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/641 (35%), Positives = 363/641 (56%), Gaps = 14/641 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ + P  + D      IS+      V + G +++     ++ RR     ++D +G + 
Sbjct: 27  DLVLHLPLRYEDETRLSPISQAVPGSTVQVEGVVAEQEVL-VRPRRQLVCRVDDDSGTLY 85

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
           L FF      +   +  G ++ V G+++   + + MVHP         V    +  VY  
Sbjct: 86  LRFFNFYASQV-TAWSPGTRLRVLGEVRAGFHGVEMVHPKCRVVRGSMVLANTLTPVYPG 144

Query: 163 PTGLSVDLFKKIIVEALSRLP---VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF- 218
             GL      ++I++A  RL    +L E +   +L    FP+  ++ +I+H P       
Sbjct: 145 MAGLPQRTLARLIMQAFERLRAKRLLQETLPATILSACQFPAFEDSLSILHCPPAGVSIT 204

Query: 219 ---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
              + + PA  R+ +DELLA Q+++     Q + +    +  +  + Q +L  +PF  T 
Sbjct: 205 SLQQRSHPAWFRIKFDELLAQQLSMRCHYHQRRSQQAPVLQQQTGLQQALLEVLPFGLTD 264

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q   + +I +D++Q   M R+LQGDVGSGKT+VA +A   ++  G Q  +MAP  ILA+
Sbjct: 265 AQCKVVTEISKDLAQPYPMQRLLQGDVGSGKTIVAALAALQSIGNGYQVAVMAPTEILAE 324

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QH+  +  +     + V  ++G+  ++ R + LER A G+A ++IGTHALF++++Q+  L
Sbjct: 325 QHFRKLSDWLTPLGVGVGWLSGSQKKSLRNQELERTATGEAMLVIGTHALFREAVQFKCL 384

Query: 396 ILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
            LVI+DEQHRFGV QRL L  K       PH L+M+ATPIPRTL ++   D+D+S I + 
Sbjct: 385 GLVIIDEQHRFGVGQRLALRMKGGDEEVIPHQLMMSATPIPRTLSMSYFADLDVSVIDQL 444

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P GR P+ T +I  +R +E++ R++     G++AYW+CP IEE +    ++ VE + +L 
Sbjct: 445 PPGRSPVVTRLIDSSRREEIVARIREACLAGRQAYWVCPLIEESEALQLKTAVETYETLS 504

Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           + F    IA+IHGR+   +K  +M  F  G  +LL+ATTVIEVG+DV +AS+++IE+AE 
Sbjct: 505 QTFPDLRIALIHGRLDSDEKSVIMAEFSQGEVQLLVATTVIEVGVDVPNASLMVIEHAER 564

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
            GL+QLHQLRGR+GRG     C+L+Y  PLS+ +  RL ++    DGF IA +DL  R  
Sbjct: 565 MGLSQLHQLRGRIGRGSATGVCVLMYQQPLSEVARKRLQIIFEHRDGFEIARQDLLLRGP 624

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           GE LG +QSG+P    A  E    LLE+AR  A+++L   P
Sbjct: 625 GEFLGTRQSGVPLLRFANLEEDIDLLEMARNAAENMLRDHP 665


>gi|148239657|ref|YP_001225044.1| ATP-dependent DNA helicase [Synechococcus sp. WH 7803]
 gi|147848196|emb|CAK23747.1| ATP-dependent DNA helicase [Synechococcus sp. WH 7803]
          Length = 843

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 239/692 (34%), Positives = 377/692 (54%), Gaps = 43/692 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L APLS  RG+G K +  L+ +            DLL ++P  ++D     +I  +    
Sbjct: 144 LDAPLSRVRGIGPKQAERLASL------GLLVVRDLLLHYPRDYVDYSALRRIEALVPGE 197

Query: 69  IVTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK-- 122
             TI   + +   F    R P     ++ L D TG I +  F          +  G+   
Sbjct: 198 TATIVATVRRCHGFT-SPRNPNLSIIELQLQDPTGRIKVSRFLAGRRFSNPSYLHGQTRL 256

Query: 123 ------ITVTGKIK------KLKNRII--MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSV 168
                 + V+G +K        ++ +I  M  P       Q      +  VYSL  GL+ 
Sbjct: 257 YPNGATVAVSGLVKDGPYGRSFQDPLIEVMESPQAPL---QSKRIGRLLPVYSLTEGLTA 313

Query: 169 DLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
           D F+ ++   L  + + PE +     Q +      +A   IH P  ++  +    AR RL
Sbjct: 314 DRFRSLVEATLPSIRLWPEPLPAQRRQARQLLHRHQAMTAIHRPESSEQLQQ---ARHRL 370

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGK---IAQKILRNIPFSPTKSQESAIKDIL 285
            +DE L  Q+ L+  R   ++     + +      +  + L N+PF  T +Q   + +I 
Sbjct: 371 VFDEFLLLQLGLMQRRAALRQRTAPSLKITSDRDGLLSRFLNNLPFQFTNAQTRVLAEID 430

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D+ +   M R++QGDVGSGKT+VA+ A+  A++AG Q  +MAP  +LA+QHY  + ++ 
Sbjct: 431 ADLERSEPMARLVQGDVGSGKTVVAVAALLKAIQAGLQGAMMAPTEVLAEQHYRSLCQWL 490

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
               + VE++TG+ P   RR+ L  +A G   +++GTHAL +D + + +L LV+VDEQHR
Sbjct: 491 PPLHVTVELLTGSTPLKKRRRLLADVASGACKVLVGTHALLEDPVAFERLGLVVVDEQHR 550

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI T ++  
Sbjct: 551 FGVRQRNRLLGKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIMTTMLAG 610

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHG 523
           +  D+    ++  + +G++AY + P +EE ++ + RS V+    L +       + ++HG
Sbjct: 611 SERDQAYSLIREEVEKGQRAYVVLPLVEESEKMDLRSAVDVHRQLEDEVFPDLKVGLLHG 670

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           R+  +DK++V+ +F  G  ++L++TTV+EVG+DV +AS+++I++A+ FGLAQLHQLRGRV
Sbjct: 671 RLPSVDKQAVIQAFAKGETQVLVSTTVVEVGVDVPEASVMMIDHADRFGLAQLHQLRGRV 730

Query: 584 GRGEEISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           GRG   S C+L+     PL++    RL VL  + DGF IAE DL+ R  G++LG +QSG+
Sbjct: 731 GRGAAASRCLLINDSRNPLARQ---RLEVLVRSTDGFEIAEMDLRLRGPGQVLGTRQSGL 787

Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           P   +A      S+LE AR++A  IL  DPDL
Sbjct: 788 PDLALASLADDGSVLEEAREEAADILRNDPDL 819


>gi|329118091|ref|ZP_08246803.1| DNA helicase RecG [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465751|gb|EGF12024.1| DNA helicase RecG [Neisseria bacilliformis ATCC BAA-1200]
          Length = 679

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 239/636 (37%), Positives = 355/636 (55%), Gaps = 8/636 (1%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ + P  + D  +   + +        + G +  H     + R+   + + D  G + 
Sbjct: 29  DLVLHLPLRYEDETHIMPLQDAPVGVPCQVEGTVL-HQEVMFKPRKQLIVQIGDNAGNVL 87

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
            L F       +     G++I   G+IK       M+HP      +  +   L   VY  
Sbjct: 88  FLRFIHFYPSQQKQLAVGKRIRAVGEIKHGFYGDEMIHPKIRDAETGGLAESLT-PVYPT 146

Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222
             GL+    ++II  AL   P L + +   LL +   P +AE+  ++H P  +   +  S
Sbjct: 147 VNGLNQPTLRRIIQTALDDTP-LHDTLPDALLGRLKLPHLAESLRLLHAPPPSLSVQQLS 205

Query: 223 ----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
               PA +RL +DELLA Q+++ L R++       P+   G ++Q +L  +PF+ T +QE
Sbjct: 206 DGALPAWQRLKFDELLAQQLSMRLARQKRISGQAAPLTGNGTLSQPLLNALPFALTCAQE 265

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A+ +I QDM+Q   M R+LQGDVGSGKT+VA ++  AA+EAG Q  +MAP  ILA+QH+
Sbjct: 266 KALAEIRQDMAQTFPMHRLLQGDVGSGKTIVAALSALAAIEAGAQVAVMAPTEILAEQHF 325

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              K++     + +  ++G+  +  + +A  +++ G   I +GTHALFQD + +  L LV
Sbjct: 326 IKFKQWFDPLGLDIAWLSGSQRKKAKDEAKAQLSDGLVKIAVGTHALFQDDVAFQNLGLV 385

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++   D+D+S I E P GR PI
Sbjct: 386 IVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSLIDELPPGRTPI 445

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
           +T ++   R  EV   L  +  +G++AYW+CP IEE +    ++  E    L       +
Sbjct: 446 QTRLVNSLRRAEVEGYLLGICRKGQQAYWVCPLIEESETLQLQTATETLEQLQTALPELN 505

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I ++HGRM   +K +VM  F  G   +L+ATTVIEVG+DV +A++++IE+AE  GLAQLH
Sbjct: 506 IGLVHGRMKATEKATVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMGLAQLH 565

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG   S C+LL+  PLS+ +  RL V+    DGF IA +DL  R  GE LG +
Sbjct: 566 QLRGRVGRGAAKSVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGAR 625

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           QSG+P    A  E    LLE AR  A  ++ Q+PD+
Sbjct: 626 QSGVPMLRFANLEQDLHLLERARDIAPQLIEQNPDI 661


>gi|294627104|ref|ZP_06705692.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294667377|ref|ZP_06732595.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292598537|gb|EFF42686.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292602818|gb|EFF46251.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 717

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 253/700 (36%), Positives = 386/700 (55%), Gaps = 52/700 (7%)

Query: 11  APLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
           A LS+  GVG K +  F ++ I           DL  + P  + DR     I+++     
Sbjct: 17  ARLSSLPGVGPKVADRFAARGI-------LSVQDLWLHLPLRYEDRTRLTTIAQLQGGVP 69

Query: 70  VTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVT 126
             I G +      F+    RP  ++ ++D + G + L FF+ +   +   F  G ++ V 
Sbjct: 70  AQIEGRVEAVERGFRF---RPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FAVGTRVRVF 125

Query: 127 GKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183
           G  K  ++   +VHP Y +    +D      ++ VY +  G+     +K+I +AL RLP 
Sbjct: 126 GTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIGQALERLPP 185

Query: 184 ------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDEL 233
                 + P W     LQ +  PS+  A   +H P    D         PA++RLA +EL
Sbjct: 186 ESALELLPPHW-----LQDERLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQQRLAIEEL 240

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA Q++L   R   ++     +   G + Q++ + +PF  T +Q+   + I  D++Q + 
Sbjct: 241 LAHQLSLRRQRIALQRLHAPSLPGNGTLVQQLRKALPFQLTGAQQRVFEQIAHDLAQPSP 300

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + +   I + 
Sbjct: 301 MLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLANLRSWLEPLGIRIV 360

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    R  A+  +A GQA +++GTHAL Q+++ ++ L L I+DEQHRFGV QRL 
Sbjct: 361 WLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHRFGVHQRLA 420

Query: 414 LTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L  K  A    PH L+MTATPIPRTL +++  D+D+S I + P GR P++T+++   R  
Sbjct: 421 LRDKGAAAGSVPHQLVMTATPIPRTLAMSAYADLDVSAIDQLPPGRTPVQTIVLSAERRP 480

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER--------------FNSLHEHFT 515
           E++ER++   +EG++AYW+C  IEE +E    + V++              F +L     
Sbjct: 481 ELVERIRAACAEGRQAYWVCTLIEESEEPGKGAQVQQGGPPRIEAQAAEVTFEALSAQLP 540

Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIENAE  GLA
Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGLA 600

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+ R  GE+L
Sbjct: 601 QLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLQLRGPGELL 660

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           G +Q+G+  F IA       LL   +  A+ +L + PD+ 
Sbjct: 661 GTRQTGLASFRIADLARDAGLLPRVQVLAERLLAEAPDIA 700


>gi|113869065|ref|YP_727554.1| ATP-dependent DNA helicase RecG [Ralstonia eutropha H16]
 gi|113527841|emb|CAJ94186.1| ATP-dependent DNA helicase [Ralstonia eutropha H16]
          Length = 729

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 242/660 (36%), Positives = 363/660 (55%), Gaps = 29/660 (4%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRRPYKILLND 96
           R +DL+ + P  + D      I+E      + +   +      +    + RR   + + D
Sbjct: 53  RPVDLVLHLPMRYEDETTLAPIAEAIHRAGLGLPAQVEGEVISNEVTFRPRRQLVVKIAD 112

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156
            +GE+TL F        K    EG ++ V G+++       MVHP        +     +
Sbjct: 113 DSGELTLRFLNFYGNQTKQ-MAEGVRLRVRGEVRGGFFGAEMVHPTVRPVVPGEALPDRL 171

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
             VY    G+     +K I   LSR P+   LP  +    L +     +A+   ++H P 
Sbjct: 172 TPVYPSTAGIPQAYLRKAIGGTLSRTPMPETLPRAVLDGPLARLHLRPLADCLRLLHAPS 231

Query: 214 ----KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI--NVEGKIAQKILR 267
               +A   + + PA +R+ +DELLA QI+L       ++E   P     EG +  + L 
Sbjct: 232 PQESEAALADRSHPAWQRIKFDELLAQQISLRRAHAA-RREKTAPTMPRREGGLLTRFLA 290

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +PF  T +Q+  +++I  DM++ + M R+LQGDVGSGKT+VA +A   A++AG QA +M
Sbjct: 291 ALPFRLTGAQQRVVEEIAADMTRPHPMHRLLQGDVGSGKTIVAALAACQAIDAGYQAALM 350

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  ILA+QHY  +  + +   + V  + G+     +R+A  R+  GQA ++IGTHAL Q
Sbjct: 351 APTEILAEQHYRKLSAWLEPLGVPVAWLAGSQKARDKREAAARVESGQAQLVIGTHALIQ 410

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--------------TAPHVLLMTATPIPR 433
           D++++ KL L +VDEQHRFGV QRL L  KA              T PH L+M+ATPIPR
Sbjct: 411 DTVRFAKLGLSVVDEQHRFGVAQRLALRGKAGAADTPDSAATAAETVPHQLMMSATPIPR 470

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL +T   D+D+S I E P GR PI T ++   R DEVI R+    +EG++ YW+CP IE
Sbjct: 471 TLAMTYYADLDVSVIDELPPGRTPIVTRLVNDERRDEVIGRIHHAAAEGRQVYWVCPLIE 530

Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E +    ++ VE + +L        + ++HGR+   +K +VMD F     ++L+ATTVIE
Sbjct: 531 ESEALQLQTAVETYETLVAALPDLRVGLVHGRLPPAEKAAVMDDFSANRMQVLVATTVIE 590

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS  +  RL+ ++
Sbjct: 591 VGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAESVCLLMYQAPLSPTARERLATMR 650

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            T DGF IA  DL+ R  GE LG +QSG      A  +    L+E A++ A+ +L + P+
Sbjct: 651 ETTDGFEIARRDLEIRGPGEFLGARQSGEAMLRFADLQTDAWLVEYAQEAAELMLARYPE 710


>gi|53720475|ref|YP_109461.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei K96243]
 gi|52210889|emb|CAH36877.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei
           K96243]
          Length = 748

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 249/663 (37%), Positives = 372/663 (56%), Gaps = 31/663 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +   S    + RR   + L D  
Sbjct: 75  TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-SEIAYRPRRQLLVKLRDDD 133

Query: 99  G-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
           G E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +
Sbjct: 134 GAELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQ 189

Query: 158 A---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHN 211
           A   VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+
Sbjct: 190 ALTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHH 249

Query: 212 PRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IA 262
           P    D     + T PA  R+ +DELLA Q++L    ++ +      +    +     ++
Sbjct: 250 PGVGADEAALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALS 309

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG 
Sbjct: 310 ARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGY 369

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGT
Sbjct: 370 QAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGT 429

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPR 433
           HA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPR
Sbjct: 430 HAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPR 489

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IE
Sbjct: 490 TLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIE 549

Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIE
Sbjct: 550 ESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIE 609

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++
Sbjct: 610 VGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMR 669

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P+
Sbjct: 670 ETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPE 729

Query: 673 LTS 675
           + +
Sbjct: 730 VVA 732


>gi|172035243|ref|YP_001801744.1| ATP-dependent DNA helicase RecG [Cyanothece sp. ATCC 51142]
 gi|171696697|gb|ACB49678.1| ATP-dependent DNA helicase [Cyanothece sp. ATCC 51142]
          Length = 819

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/654 (36%), Positives = 381/654 (58%), Gaps = 25/654 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99
           D+LFY+P   ID   +  IS +     VTI G + + + F   K +    ++++L D TG
Sbjct: 150 DILFYYPRDHIDYARQVAISNLVAGETVTIVGTVKRCNCFTSPKNKKLSIFELILRDHTG 209

Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS--- 148
            I L  F+  T        E  K ++  G  +  +G +K+ +  I + +P     +S   
Sbjct: 210 HIKLNRFFAGTRFTSRGWQERQKRIYPLGSIVAASGLVKQNRYGITLDNPEIEVLDSVGS 269

Query: 149 --QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
             + +    +  VY L  G+  DL +K I+ +L  +  + + + + L ++     + +A 
Sbjct: 270 SIESLKIGRVLPVYPLTEGVGADLIRKAIIASLEAIKQIRDPLPRVLREQYGLMGLKDAI 329

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI--GIPINVEGKIAQK 264
             IH P      E  + AR RL +DE    Q+  L  R+Q +K++        +GK+ ++
Sbjct: 330 GNIHFPETP---ELLAHARRRLVFDEFFYLQLGFL-QRRQEQKQVHNSAVFTPQGKLIKQ 385

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
               +PF  T +Q+  I +IL+D++    M R++QGDVG+GKT+VA+ A+ AA+++G QA
Sbjct: 386 FDDILPFKLTNAQQRVINEILEDLNSVTPMNRLVQGDVGAGKTIVAVFAILAALQSGYQA 445

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  +LA+QHY     +     + VE++TG+  +A R +   ++  G+  +++GTHA
Sbjct: 446 ALMAPTEVLAEQHYRKFIPWFNQLYLPVELLTGSTKKAKREEIHRQLQTGELPLLVGTHA 505

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L QD + + KL LV++DEQHRFGVQQR KL  K  +PHVL MTATPIPRTL LT  GD+D
Sbjct: 506 LIQDPVNFQKLGLVVIDEQHRFGVQQRAKLLAKGKSPHVLTMTATPIPRTLALTLHGDLD 565

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           +S+I E P GR+ I+T ++      +  + ++  +++G++ Y I P IEE ++ + ++ V
Sbjct: 566 VSQIDELPPGRQAIQTTVLTGKERTQAYDLIRREVAQGRQVYIIFPMIEESEKLDVKAAV 625

Query: 505 ERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           E    L E       I ++HGRMS   K+ V+ +F++   +++++TTVIEVG+DV +A+I
Sbjct: 626 EEHKKLSEKVFPDFKIGLLHGRMSSTAKDEVLTAFRDNEYQIIVSTTVIEVGVDVPNATI 685

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++IENAE FGL+QLHQLRGRVGRG   S C+L+     + +   RL+VL+ ++DGF I+E
Sbjct: 686 MLIENAERFGLSQLHQLRGRVGRGSHKSYCLLMSSSK-TPDVRQRLTVLEQSQDGFFISE 744

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            DL+ R  G +LG +QSG+P F +A       +LE+AR  A+ I+  D  L S+
Sbjct: 745 MDLRFRGPGTVLGTRQSGLPDFALASLVEDQEVLELARLAAEKIIVADQTLGSL 798


>gi|326389531|ref|ZP_08211098.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter ethanolicus JW
           200]
 gi|325994536|gb|EGD52961.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter ethanolicus JW
           200]
          Length = 681

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 259/676 (38%), Positives = 392/676 (57%), Gaps = 26/676 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           PL   +   +GVG K +  L K+ IN          DLLFY P  + +R    KI ++  
Sbjct: 2   PLNLDIQYVKGVGPKRAKLLKKLGINTVE-------DLLFYFPKDYENRSDILKIEDLKV 54

Query: 67  ERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               T  GYI+      +  K    K+ + DGTG + L+++      +KN F  G +  +
Sbjct: 55  GEKQTFRGYIAGSPREIKTSKVIITKVPVKDGTGAVELVWY--NQPYIKNNFKIGEEYII 112

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182
            GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   +
Sbjct: 113 NGKLQFKYGQLIVENP--VLEKSEDFKLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 170

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E+ +++ L +K    I  A   I+ P+      +   A+ R  Y EL   Q+AL L
Sbjct: 171 QEVEEFFDEEFLSEKGLMDIKNALININFPQNEA---YLEQAKYRFKYQELFLLQMALFL 227

Query: 243 MRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           M++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M R++QGD
Sbjct: 228 MKRSVKGKKGIKFERVELK---PFLMGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQGD 284

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  
Sbjct: 285 VGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYHTLKELFRNTDIKIGLLSGSISP 344

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           +++++ LE+I +G   I++GTHAL +D++ +  L L I DEQHRFGV+QR  LTQK   P
Sbjct: 345 SNKKEVLEKIKNGDYDIVVGTHALIEDNVIFNNLGLCITDEQHRFGVRQRALLTQKGENP 404

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +
Sbjct: 405 DVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKK 464

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
           G++ Y +CP IEE  + N  S    +  ++E     + + ++HG+M+D DKE VM+ F N
Sbjct: 465 GRQVYVVCPLIEESDKINAMSAEIVYREIYEDAFKEAKVGLLHGKMTDSDKEKVMEEFVN 524

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L++TTVIEVG++V +A+++I+ENAE FGLAQLHQLRGRVGR E  S CIL+ +  
Sbjct: 525 GKIDILVSTTVIEVGVNVPNATVMIVENAERFGLAQLHQLRGRVGRSEFQSYCILISYSN 584

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            S  +  RL VL  T DGF IAE+DL+ R  GE LG++Q G+P+F IA       +L+  
Sbjct: 585 -SDIAKKRLGVLAQTSDGFKIAEKDLEIRGPGEFLGLRQHGLPEFKIANIFEDIDILKTV 643

Query: 660 RKDAKHILTQDPDLTS 675
           +KD + +L +DP L +
Sbjct: 644 QKDVEELLEKDPKLEN 659


>gi|290967865|ref|ZP_06559416.1| ATP-dependent DNA helicase RecG [Megasphaera genomosp. type_1 str.
           28L]
 gi|290782105|gb|EFD94682.1| ATP-dependent DNA helicase RecG [Megasphaera genomosp. type_1 str.
           28L]
          Length = 678

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/646 (37%), Positives = 364/646 (56%), Gaps = 20/646 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERI--VTITGYISQHSSFQLQKRRPYKIL---LNDG 97
           DLL Y P ++ DR Y   ++ IS  R   V I GY+ +    ++  RR   IL   + D 
Sbjct: 29  DLLQYFPRTYEDRRYISPMATISLPRTEPVLICGYVQRIQ--EVHPRRGLSILKVGIADD 86

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
           +GE  L++F +  +  K +F   +++TV GK++    +  M +P         V    +E
Sbjct: 87  SGEAELIWFNQPFK--KKLFTVHQQLTVFGKMEAAYGKRQMNNPDI---EEGCVTGTALE 141

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA--EAFNIIHNPRKA 215
            VY L  GL     +  I +AL+ +       E D      +P+++  EA+  IH P   
Sbjct: 142 PVYGLTEGLRQKELRNFIRDALNYMEEHSGLTEADTEVPFLYPTMSLYEAYRTIHFP--- 198

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
              E    AR +LA+ EL   Q+ L L R+  KK+ GI     G + Q +++N+PF  T+
Sbjct: 199 DSLEAREKARRQLAFQELFDLQLGLALRRRGEKKKAGIKCAPNGGLLQAVVKNLPFLLTQ 258

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q +A  DI  DM  +  M R++QGDVGSGKT VA +A+A  VE G Q  +MAP  ILA 
Sbjct: 259 GQTNAFLDIQSDMESEVPMQRLVQGDVGSGKTAVAALALAKIVENGYQGALMAPTEILAT 318

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QH E + +  Q   I   ++TG +    R++ L+ IA G   ++IGTHAL Q+ +Q+  L
Sbjct: 319 QHAEELARLFQGIPIKTALLTGRIGAKERQRVLQEIADGSIQVVIGTHALLQEDVQFAHL 378

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LV+ DEQHRFGV+QR  L +K  APH L MTATPIPRTL L+  GD+D+S I E P GR
Sbjct: 379 GLVVTDEQHRFGVKQRAALQEKGRAPHGLFMTATPIPRTLALSVYGDLDVSSIRELPPGR 438

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           KP+KT  +       +   +K ++  G++ Y +CP +EE    + ++    +  L E   
Sbjct: 439 KPVKTYAVKETMRARIYAFMKKLICAGQQCYVVCPLVEESAALDLQAATGLYEMLKEKVF 498

Query: 516 SS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                 ++HGRM   +KE+VM +F+     +L+AT+VIEVG++V +A++++I+ AE FGL
Sbjct: 499 KEFHCGLVHGRMKGKEKETVMKAFQEKRIDILVATSVIEVGVNVPNATLMLIDGAERFGL 558

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           AQLHQLRGRVGRG+  + CILL H   ++ +  RL  +++ +DGF++AE+DL  R  G++
Sbjct: 559 AQLHQLRGRVGRGDLQAYCILLAHGG-TEETRQRLHWMESVQDGFVLAEKDLLLRGSGKL 617

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
            G  Q G+P F  A       LL  AR+ A+  +  +PD T VR +
Sbjct: 618 FGYMQHGLPDFKAADILKDVQLLSQAREAAQTYMAVEPDETRVRAR 663


>gi|294793852|ref|ZP_06758989.1| ATP-dependent DNA helicase RecG [Veillonella sp. 3_1_44]
 gi|294455422|gb|EFG23794.1| ATP-dependent DNA helicase RecG [Veillonella sp. 3_1_44]
          Length = 680

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/669 (36%), Positives = 381/669 (56%), Gaps = 33/669 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+T +G+G      L K+   G  N T    LL Y P ++ DR     I ++       +
Sbjct: 5   LTTIKGIGPGREKQLHKL---GITNVT---SLLTYFPRTYEDRRTIYSIGDLKSGMTGGV 58

Query: 73  TGYISQHSSFQLQKRRP------YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            G +       +Q++RP       ++++ DGTG + ++ F +  +  KN + +G++I   
Sbjct: 59  VGTV-----IAVQEKRPRPRLSILEVVIADGTGPLKIVLFNQGYK--KNFYKKGQRIYAY 111

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           GK +     + M  P     N  D   P   I  +Y+L  G+S  + +  +    +    
Sbjct: 112 GKAEFQYGYMQMNTPQ--MENLGDGGEPDRGIVPIYALADGVSQFVVRSTVRNWFAANHE 169

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE +  ++ +   + S  +AF ++H P  ++ +E    AR +LAY+EL   Q  L L+R
Sbjct: 170 LPEILPVEVREDHHYMSRYDAFKMMHFPDSSELYE---KARYQLAYEELFVMQAGLALLR 226

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            + +   G  +   G++  + + N+PFS T  Q+ A++DI  DM  +  M R+LQGDVGS
Sbjct: 227 NKEQCHRGSKMGPNGELMAQCIENLPFSLTGDQQRALEDIRIDMEDERPMQRLLQGDVGS 286

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA +++  A+E G Q  +MAP  ILA QHYE I+    N  I +E++TG+  +  +
Sbjct: 287 GKTIVATLSLLKAIENGYQGALMAPTEILAAQHYEGIRTVCANLGITIELLTGSSTKKEK 346

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
               E +A G+  +IIGTHAL Q+ + ++ L LVI+DEQHRFGV QR +L QK T PHVL
Sbjct: 347 ECIYEGLADGRIQMIIGTHALIQEGVNFHNLGLVIIDEQHRFGVDQRARLQQKGTYPHVL 406

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRT+ L+  GD+ +S I E P GRKP+KT  +  +  + +       ++EG++
Sbjct: 407 IMTATPIPRTMTLSVYGDLAVSLIKEMPPGRKPVKTYAVDSSYKERLRTFFGKEMAEGRQ 466

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP +EE ++ + ++  E +  L E+F  +  + ++HGRM   +K+ VM++F  G  
Sbjct: 467 VYVVCPLVEESEKLDLQAAEELYLELKEYFYKAYEVGLVHGRMKPSEKDEVMNAFHRGEI 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL++TTVIEVG++V +A+I+ +E AE FGL+QLHQLRGRVGRG   S CIL+     SK
Sbjct: 527 LLLVSTTVIEVGVNVPNATIMCVEGAERFGLSQLHQLRGRVGRGAHQSYCILVSD---SK 583

Query: 603 N--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           N  S  RL +++  +DGF +AE+DL  R  G++ G+ QSG+P   +A       +L  AR
Sbjct: 584 NDVSQERLKLMEQIQDGFELAEQDLLIRGSGQLFGLAQSGLPDLRVANIIKDIEILVKAR 643

Query: 661 KDAKHILTQ 669
           KD      Q
Sbjct: 644 KDVLDFANQ 652


>gi|134280484|ref|ZP_01767195.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 305]
 gi|134248491|gb|EBA48574.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 305]
          Length = 902

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 249/663 (37%), Positives = 372/663 (56%), Gaps = 31/663 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +   S    + RR   + L D  
Sbjct: 229 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-SEIAYRPRRQLLVKLRDDD 287

Query: 99  G-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
           G E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +
Sbjct: 288 GAELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQ 343

Query: 158 A---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHN 211
           A   VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+
Sbjct: 344 ALTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHH 403

Query: 212 PRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IA 262
           P    D     + T PA  R+ +DELLA Q++L    ++ +      +    +     ++
Sbjct: 404 PGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALS 463

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG 
Sbjct: 464 ARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGY 523

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGT
Sbjct: 524 QAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGT 583

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPR 433
           HA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPR
Sbjct: 584 HAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPR 643

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IE
Sbjct: 644 TLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIE 703

Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIE
Sbjct: 704 ESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIE 763

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++
Sbjct: 764 VGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMR 823

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P+
Sbjct: 824 ETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPE 883

Query: 673 LTS 675
           + +
Sbjct: 884 VVA 886


>gi|254260325|ref|ZP_04951379.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1710a]
 gi|254219014|gb|EET08398.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1710a]
          Length = 902

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/662 (37%), Positives = 371/662 (56%), Gaps = 29/662 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 229 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 288

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +A
Sbjct: 289 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 344

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+P
Sbjct: 345 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 404

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263
               D     + T PA  R+ +DELLA Q++L    ++ +      +    +     ++ 
Sbjct: 405 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALSA 464

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 465 RLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 524

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTH
Sbjct: 525 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 584

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRT
Sbjct: 585 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 644

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE
Sbjct: 645 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 704

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 705 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 764

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ 
Sbjct: 765 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 824

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++
Sbjct: 825 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEV 884

Query: 674 TS 675
            +
Sbjct: 885 VA 886


>gi|237813724|ref|YP_002898175.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei MSHR346]
 gi|237505267|gb|ACQ97585.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei MSHR346]
          Length = 906

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/662 (37%), Positives = 371/662 (56%), Gaps = 29/662 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 233 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 292

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +A
Sbjct: 293 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 348

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+P
Sbjct: 349 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 408

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263
               D     + T PA  R+ +DELLA Q++L    ++ +      +    +     ++ 
Sbjct: 409 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALSA 468

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 469 RLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 528

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTH
Sbjct: 529 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 588

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRT
Sbjct: 589 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 648

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE
Sbjct: 649 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 708

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 709 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 768

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ 
Sbjct: 769 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 828

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++
Sbjct: 829 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEV 888

Query: 674 TS 675
            +
Sbjct: 889 VA 890


>gi|126452909|ref|YP_001067596.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1106a]
 gi|242314593|ref|ZP_04813609.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1106b]
 gi|126226551|gb|ABN90091.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1106a]
 gi|242137832|gb|EES24234.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1106b]
          Length = 902

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/662 (37%), Positives = 371/662 (56%), Gaps = 29/662 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 229 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 288

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +A
Sbjct: 289 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 344

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+P
Sbjct: 345 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 404

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263
               D     + T PA  R+ +DELLA Q++L    ++ +      +    +     ++ 
Sbjct: 405 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALSA 464

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 465 RLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 524

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTH
Sbjct: 525 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 584

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRT
Sbjct: 585 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 644

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE
Sbjct: 645 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 704

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 705 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 764

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ 
Sbjct: 765 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 824

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++
Sbjct: 825 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEV 884

Query: 674 TS 675
            +
Sbjct: 885 VA 886


>gi|251797726|ref|YP_003012457.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. JDR-2]
 gi|247545352|gb|ACT02371.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. JDR-2]
          Length = 684

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/646 (36%), Positives = 369/646 (57%), Gaps = 8/646 (1%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL Y P  + D   R +++EI +   VT+ G I  +   Q   +   ++        + 
Sbjct: 32  DLLDYFPFRYEDYRIR-ELAEIKDGEKVTVQGTIRGNGILQRYGKNKSRLTCKIEVDHML 90

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
           +   +     L+     GR+I +TGK ++ + ++ +    +   ++  V    ++ VYS+
Sbjct: 91  VTAVWFNRHFLQGQLTPGREIMLTGKWEQQRLQMTVSESEFADKSTGMVKSGTLQPVYSV 150

Query: 163 PTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
             G++    +K I +AL +   ++ E +  +L+++    +  +A   IH+P + K+    
Sbjct: 151 GGGITQAWMRKTIKQALLQYGSMIEEVLPHELVERHGLMARRDAVQRIHDPEEVKE---G 207

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESA 280
             AR R+ Y+EL   Q+ L   R   +K   GI   V G+  +     +PF  T  Q+  
Sbjct: 208 LEARRRMVYEELFLFQLKLQAYRSLTRKRGDGIVHQVNGETIRNFAATLPFELTDGQKKV 267

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           + +I+ DM Q   M R+LQGDVGSGKT+VA IA+   ++AG Q  +M P  ILA+QH   
Sbjct: 268 VNEIMSDMRQPAAMNRLLQGDVGSGKTVVAAIALYCTIKAGHQGALMVPTEILAEQHLRS 327

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           ++K   +T I V ++TG++ +  RR  L  +  G   I++GTHAL QD + +  L LV+ 
Sbjct: 328 LQKLFADTGIEVALLTGSLTEKKRRDVLAGLQMGMIDILVGTHALIQDDVFFRSLGLVVT 387

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ GD+D+S I E+P GRKPIKT
Sbjct: 388 DEQHRFGVNQRSILRRKGMNPDVLTMTATPIPRTLAITAFGDMDVSTIKERPHGRKPIKT 447

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519
             +  + ++ V+  ++  + EG++AY ICP IEE  + + ++ ++ +  + + F    + 
Sbjct: 448 YWVKHDMMERVLGFIRREVGEGRQAYVICPLIEESDKLDVQNAIDLYVQMQQAFPDLKVG 507

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           ++HGR+S  +K+ VM  F     +LL+ATTV+EVG+DV +A++III +AE FGL+QLHQL
Sbjct: 508 LLHGRLSASEKDEVMRGFGANETQLLVATTVVEVGVDVPNATLIIIMDAERFGLSQLHQL 567

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           RGRVGRG   S C+L+  P  S+N   R+ V+  T DGF ++  DL+ R  G+  G KQS
Sbjct: 568 RGRVGRGAHQSFCVLVADPK-SENGRERMKVMTETNDGFEVSRRDLELRGPGDFFGTKQS 626

Query: 640 GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           G+P+F IA       +LE+AR DA  +  +D   T+   + +R+ L
Sbjct: 627 GLPEFKIADMAAEYEMLELARDDAAELTGRDDFWTNPLFERMRVQL 672


>gi|113954884|ref|YP_730486.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9311]
 gi|113882235|gb|ABI47193.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9311]
          Length = 857

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/705 (34%), Positives = 388/705 (55%), Gaps = 47/705 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PL+   G+G K +  L+ +            DL+ ++P  ++D     +I  +    
Sbjct: 158 LESPLARVHGIGPKLAERLASL------GLLVVRDLIQHYPRDYVDYSALRRIEALEAGE 211

Query: 69  IVTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK-- 122
             TI   + +   F    R P     ++ L D TG I +  F          +  G+   
Sbjct: 212 TATIVATVRRSHGFT-SPRNPNLSIIELQLQDPTGRIKVTRFLAGKRFSNPSYLHGQTRQ 270

Query: 123 ------ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-------IEAVYSLPTGLSVD 169
                 + V+G +K     +    P  +    +  N PL       +  VY L  GL+ D
Sbjct: 271 YPVGATVAVSGLVKSGPYGVSFQDP--LIEVMESANAPLRSRQIGRLLPVYPLTEGLTAD 328

Query: 170 LFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
            F+ ++   L  +   PE +     + +   +  +A   IH P  ++  +    AR RL 
Sbjct: 329 RFRSLVEAVLPAVRFWPEPLPASRREARGLMARDQALVAIHRPETSEQLQQ---ARHRLV 385

Query: 230 YDELLAGQIALLLMRKQFKKEI-----GIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
           +DE L  Q++L+  R   ++       G+ +  EG +  + L  +PF  T +Q+    +I
Sbjct: 386 FDEFLLLQLSLMQRRAALRQRSAPVLHGV-VEREGLVG-RFLSLLPFELTGAQKRVFSEI 443

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
            QD+ +   M R++QGDVGSGKT+VA+ A+  AVEAG Q  +MAP  +LA QHY  +  +
Sbjct: 444 EQDLERPEPMARLVQGDVGSGKTVVAIAALLRAVEAGWQGALMAPTEVLAAQHYRSLCCW 503

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                + VE++TG+ P+  RR+ L  ++ G   I++GTHAL +D + + +L LV+VDEQH
Sbjct: 504 LPPLHVSVELLTGSTPRRSRRQILSDLSGGTLRILVGTHALLEDPVAFDRLGLVVVDEQH 563

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           RFGV+QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI+T ++ 
Sbjct: 564 RFGVRQRNRLLDKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIRTRVVK 623

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIH 522
            +  +E  E ++  +S+G++ Y + P +EE ++ + RS V+    L E      S+ ++H
Sbjct: 624 SSEREEAYELIREQVSQGQRTYVVLPLVEESEKVDLRSAVDVHRQLSEEVFPEFSVGLLH 683

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GR++  +K++V+  F  GT ++L++TTV+EVG+DV +AS+++I++A+ FGLAQLHQLRGR
Sbjct: 684 GRLASAEKQAVIADFAAGTTQILVSTTVVEVGVDVPEASVMVIDHADRFGLAQLHQLRGR 743

Query: 583 VGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           VGRG   S C+L+     PL++    RL VL  + DGF IAE DL+ R  G++LG +QSG
Sbjct: 744 VGRGAAASYCLLVNDSRNPLARQ---RLEVLVRSNDGFEIAEMDLRFRGPGQVLGTRQSG 800

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +P   +A      S+LE AR +A  IL +DPDL S   + IR+LL
Sbjct: 801 LPDLALASLADDGSVLEEARDEAASILKEDPDLKSF--EHIRVLL 843


>gi|318041336|ref|ZP_07973292.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CB0101]
          Length = 805

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 239/688 (34%), Positives = 381/688 (55%), Gaps = 39/688 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS  +GVG K +  L+ + +   A      DL+ Y+P  ++D     +I+ +   R  T
Sbjct: 111 PLSEIKGVGPKSATRLAAL-DLWVAR-----DLVRYYPRDYLDYSNLVRIAALEPGRTAT 164

Query: 72  ITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFE--------G 120
           I   + +  SF   +     IL   L D TG I +  F+         + +        G
Sbjct: 165 IVATVRRSHSFTSPRNPNLSILELQLADITGRIRISKFFAGKRFSSPAWLKAQQRQYPTG 224

Query: 121 RKITVTGKIKK------LKNRI--IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFK 172
             + V+G +K+       ++ +  ++  PH    + Q      +  VY L  GLS D  +
Sbjct: 225 ATVAVSGLVKETPYGPAFQDPLMEVLASPHAPVQSEQ---IGRLLPVYGLTEGLSADRLR 281

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            ++   L+     P+ +   + Q++   ++  A   IH P    D    + AR RL +DE
Sbjct: 282 ALVRPLLAAAQGWPDPLPASIQQQEQLVNLGTALTQIHAP---SDQASLAKARRRLVFDE 338

Query: 233 LLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            L  Q+ LL  R+Q        +N   G +    L  +PF  T +Q+  + +I  D+ ++
Sbjct: 339 FLYLQLGLLQRRRQLTSRPAPALNNPSGTLLPAFLELLPFPLTGAQQRVLAEIRADLERQ 398

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVGSGKT+VA+ A+  A+EAG Q  +MAP  +LA+QHY  + ++     + 
Sbjct: 399 EPMARLVQGDVGSGKTVVAIAALLTAIEAGCQGALMAPTEVLAEQHYRKLCEWLPQLHVS 458

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
             ++TG+ P   RR+ L  +A+G   +++GTHAL +D +Q+ +L LV+VDEQHRFGV QR
Sbjct: 459 CALLTGSTPARRRRELLADLANGTLKMLVGTHALLEDPVQFARLGLVVVDEQHRFGVHQR 518

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            +L  K   PH+L MTATPIPRTL L+  GD+++S+I E P GR PI+T ++     ++ 
Sbjct: 519 NRLLDKGLQPHLLTMTATPIPRTLALSLHGDLEVSQIDELPPGRTPIRTALLSAAEREQA 578

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDID 529
            + ++  ++ G++AY + P +EE ++ + RS VE    L E       + ++HGRM+  D
Sbjct: 579 YQLIREQVALGQRAYVVLPLVEESEKLDLRSAVEVHQQLSEQIFPDLQVGLLHGRMASAD 638

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K++ + +F  G  ++L++TTV+EVG+DV +AS+++IE+A+ FGLAQLHQLRGRVGRG   
Sbjct: 639 KQAAIGAFAAGDTQVLVSTTVVEVGVDVPEASVMVIEHADRFGLAQLHQLRGRVGRGAAA 698

Query: 590 SSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           S C L+     S+N+    RL VL ++ DGF IAE DL+ R  G++LG +QSG+P   +A
Sbjct: 699 SFCQLIND---SRNALARQRLEVLVHSTDGFEIAEMDLRLRGPGQVLGTRQSGLPDLALA 755

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTS 675
                  +LE AR  A+ I+ +DP L +
Sbjct: 756 SLTDDGDVLEQARLVAQQIMERDPGLEA 783


>gi|76810269|ref|YP_334739.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1710b]
 gi|76579722|gb|ABA49197.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1710b]
          Length = 866

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/662 (37%), Positives = 371/662 (56%), Gaps = 29/662 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 193 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 252

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +A
Sbjct: 253 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 308

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+P
Sbjct: 309 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 368

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263
               D     + T PA  R+ +DELLA Q++L    ++ +      +    +     ++ 
Sbjct: 369 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALSA 428

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 429 RLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 488

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTH
Sbjct: 489 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 548

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRT
Sbjct: 549 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 608

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE
Sbjct: 609 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 668

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 669 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 728

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ 
Sbjct: 729 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 788

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++
Sbjct: 789 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEV 848

Query: 674 TS 675
            +
Sbjct: 849 VA 850


>gi|88808500|ref|ZP_01124010.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 7805]
 gi|88787488|gb|EAR18645.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 7805]
          Length = 831

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/694 (35%), Positives = 381/694 (54%), Gaps = 41/694 (5%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL APLS  RG+G K +  L+ +            DLL ++P  ++D     +I  +   
Sbjct: 131 PLDAPLSRVRGIGPKQAERLASL------GLLVVRDLLLHYPRDYVDYSALRRIEALVPG 184

Query: 68  RIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRK-- 122
              TI   + +   F   +     IL   L D TG I +  F          +  G+   
Sbjct: 185 ETATIVATVRRCHGFTSPRNPNLSILELQLQDPTGRIKVSRFLAGRRFSNPSYLHGQTRL 244

Query: 123 ------ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-------IEAVYSLPTGLSVD 169
                 + V+G +K     +    P  +    +    PL       +  VYSL  GL+ D
Sbjct: 245 YPNGATVAVSGLVKDGPYGLSFQDP--LIEVMESAQAPLQSKRIGRLLPVYSLTEGLTAD 302

Query: 170 LFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
            F+ ++  AL  + + PE +     Q +      +A   IH P  ++  +    AR RL 
Sbjct: 303 RFRTLVEAALPSVRLWPEPLPPQRRQARQLLDRHQALTAIHRPETSEQLQQ---ARHRLV 359

Query: 230 YDELLAGQIALLLMRKQFK----KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +DE L  Q+ L+  R   +      + I  + +G +A + L N+PF  T +Q   + +I 
Sbjct: 360 FDEFLLLQLGLMQRRAALRQRAAPSLRIASDRDGLLA-RFLDNLPFQFTGAQTRVLAEID 418

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
           +D+ +   M R++QGDVGSGKT+VA+ A+  A++AG Q  +MAP  +LA+QHY  + ++ 
Sbjct: 419 EDLERSEPMARLVQGDVGSGKTVVAVAALLKAIQAGWQGAMMAPTEVLAEQHYRSLCQWL 478

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
               + VE++TG+ P   RR+ L  +A G   +++GTHAL +D + + +L LV+VDEQHR
Sbjct: 479 PPLHVTVELLTGSTPLKKRRQLLADVASGGCKVLVGTHALLEDPVAFERLGLVVVDEQHR 538

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI T ++  
Sbjct: 539 FGVRQRNRLLGKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPILTTMLAG 598

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTS-SIAIIHG 523
           +  D+    ++  + +G++AY + P +EE ++ + RS V+    L  E F    + ++HG
Sbjct: 599 SERDQAYSVIREEVEKGQRAYVVLPLVEESEKMDLRSAVDVHRQLEEEEFPDLKVGLLHG 658

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           R+   +K++V+ +F  G  ++L++TTV+EVG+DV +AS+++I++A+ FGLAQLHQLRGRV
Sbjct: 659 RLPSAEKQAVIQAFARGETQVLVSTTVVEVGVDVPEASVMMIDHADRFGLAQLHQLRGRV 718

Query: 584 GRGEEISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           GRG   S C+L+     PL++    RL VL  + DGF IAE DL+ R  G++LG +QSG+
Sbjct: 719 GRGAAASRCLLINDSRNPLARQ---RLEVLVRSTDGFEIAEMDLRLRGPGQVLGTRQSGL 775

Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           P   +A      S+LE AR +A  IL  DPDL +
Sbjct: 776 PDLALASLADDGSVLEEARDEAADILRNDPDLNN 809


>gi|171319784|ref|ZP_02908870.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria MEX-5]
 gi|171094986|gb|EDT40012.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria MEX-5]
          Length = 686

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 241/660 (36%), Positives = 365/660 (55%), Gaps = 25/660 (3%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I E+    I    G +  +     + RR   + + D  
Sbjct: 13  TRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFDNE-VAYRPRRQLVVKIQDDD 71

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157
           GE  +L F             G+++ V G ++     + MVHP      + D   P ++ 
Sbjct: 72  GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVLT 130

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            VY    G+S    +K I  A+ R P+   LP  IE+D L+    P++A+A  I+H+P  
Sbjct: 131 PVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIERDYLKPLGVPTLAQAVRILHHPAV 190

Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-----EGKIAQKI 265
             D     + + PA  R+ ++ELLA Q++L    ++ +      +          +  ++
Sbjct: 191 DSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRAATDANALTTRL 250

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT+VA +A   A++AG QA 
Sbjct: 251 YAALPFTLTGAQARVVDEIAHDLTLAHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQAA 310

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTHA+
Sbjct: 311 LMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAI 370

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLV 436
            QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL 
Sbjct: 371 IQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLA 430

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +T   D+++S I E P GR P+ T ++   R +EVI R++     G++ YW+CP IEE +
Sbjct: 431 MTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREAALTGRQVYWVCPLIEESE 490

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
               ++ VE + +L        + ++HGR+S  DK +VM++F     +LL+ATTVIEVG+
Sbjct: 491 TLQLQTAVETYETLATALPELKVGLVHGRLSPADKAAVMEAFTRNEVQLLVATTVIEVGV 550

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL  ++ T 
Sbjct: 551 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRETT 610

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           DGF IA  DL+ R  GE LG +QSG      A  E    L++ AR  A  ++   PD+ +
Sbjct: 611 DGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAAARLIAAYPDVVT 670


>gi|295815286|ref|YP_001250813.3| ATP dependent DNA helicase RecG [Legionella pneumophila str. Corby]
 gi|148281379|gb|ABQ55467.1| ATP dependent DNA helicase RecG [Legionella pneumophila str. Corby]
          Length = 616

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/592 (39%), Positives = 353/592 (59%), Gaps = 23/592 (3%)

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           + D TG + L FF+   + ++        I   G+++   N++ M+HP Y   + Q+ +F
Sbjct: 6   VEDKTGIVKLRFFHFNKQQIQ-ALNNSAMIRAFGEVRGFNNQLEMIHPEYQLID-QESDF 63

Query: 154 PLIEA---VYSLPTGLSVDLFKKIIVEALSR----LPVLPEWIEKDLLQKKSFPSIAEAF 206
            + E    +Y    GL+    ++++  AL +    L  L EW+ +  LQ+ +F  + EA 
Sbjct: 64  HVEETLTPIYPSTQGLTQTRLRQLVKIALEQSEHELHQL-EWMSEKQLQENNFYDLGEAI 122

Query: 207 NIIHNPRKAKDFEWTS------PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260
            ++HNP    D   ++      PA +RL +DELLA Q+++   R+   K     I  +  
Sbjct: 123 KLLHNP--PPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFARQSRSKLQAPAILFDNA 180

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           I ++ + ++PFS T +Q+   K+I  D++Q   MLR+LQGDVG+GKT++A +A   A+  
Sbjct: 181 IHKRFIESLPFSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVGAGKTIIAALAALQAISQ 240

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q   MAP  +L++QH   + K+ +   I V  ++G M    R+ AL  +      +I+
Sbjct: 241 GFQVAFMAPTDLLSEQHTNSLSKWLEPIGINVLRLSGKMKTTERKNALAALQDNSCQLIV 300

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLV 436
           GTHALFQ+ +++ +L LVI+DEQHRFGV+QRL L QK       PH LLMTATPIPRTL 
Sbjct: 301 GTHALFQEQVEFARLGLVIIDEQHRFGVEQRLLLQQKGQLNQLIPHQLLMTATPIPRTLS 360

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           ++    +DIS I E P GR PI T ++  ++ + +IERL+  ++ GK+AYW+C  IEE +
Sbjct: 361 MSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAIANGKQAYWVCTLIEESE 420

Query: 497 ESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           +    +  +    L E  + + +  +HGRM   +KE+ M +FK G    ++ATTVIEVG+
Sbjct: 421 KLQCIAATDTSKKLQEQLSFARVRQVHGRMKAHEKEATMAAFKQGEIDKVVATTVIEVGV 480

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+LLY  PLS+    RL ++++T 
Sbjct: 481 DVPNASLMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSPLSQQGAERLKIMRSTT 540

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           DGFLI+E+DL+ R  GEILG +Q+G  +F IA  +   +L  I R  AK ++
Sbjct: 541 DGFLISEKDLELRGSGEILGTRQTGFRQFKIANLQRDKTLFAILRPIAKQLM 592


>gi|253995560|ref|YP_003047624.1| ATP-dependent DNA helicase RecG [Methylotenera mobilis JLW8]
 gi|253982239|gb|ACT47097.1| ATP-dependent DNA helicase RecG [Methylotenera mobilis JLW8]
          Length = 680

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/609 (38%), Positives = 354/609 (58%), Gaps = 16/609 (2%)

Query: 52  FIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTE 111
           +ID  +   + ++       + G I  H+    + R+     L D +G++TL F +    
Sbjct: 37  YIDETHVTAVRDLRMGESAQVEGEIV-HAEVSYKPRKALIARLEDASGQLTLRFLHFYPS 95

Query: 112 MLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLF 171
            + N    G  + V G+++       MVHP       + +    +  VY    GLS    
Sbjct: 96  QI-NALKVGNTLRVYGEVRSGFFGYEMVHPTCKAVGEKTIVAETLTPVYPTVAGLSQASL 154

Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR-----KAKDFEWTSPARE 226
           +K I  AL +   + E +   L    + PS A +   +H+P      +A + + T+  R 
Sbjct: 155 RKAIGIALQQQGEMHETLPAALYADLNLPSFAASLVALHHPHPEVSLRALENKSTAHWR- 213

Query: 227 RLAYDELLAGQIALLLMRKQF--KKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKD 283
           RLA+DELLA Q++   MRK +  ++ +  P      ++   +L+++PF+ T +Q+    +
Sbjct: 214 RLAFDELLAQQLS---MRKHYARRRSVSAPQFKRSKQLISALLKSLPFALTSAQQKVALE 270

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           I  D++Q + M R+LQGDVGSGKT+VA +A    VE G Q  +MAP  ILA+QHY  +  
Sbjct: 271 IEHDLTQAHPMQRLLQGDVGSGKTIVACMAALQCVENGWQVALMAPTEILAEQHYRKMLS 330

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
           + Q   I +  +TG+  +  R  AL  IA+G+A +++GTHALFQ+++++  L L I+DEQ
Sbjct: 331 WLQPLDIKIAWLTGSQSKKDRDTALASIANGEAKLVVGTHALFQEAVRFKSLGLAIIDEQ 390

Query: 404 HRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           HRFGV QRL L QK    PH L+M+ATPIPRTL ++   D+D+S I E P GR PI T I
Sbjct: 391 HRFGVHQRLALRQKGQPEPHQLMMSATPIPRTLSMSYYADLDVSVIDELPPGRSPIVTKI 450

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAII 521
           +   R +E+++R++    +G +AYW+CP IEE +     +  + +  + E F    I ++
Sbjct: 451 VSDARREEILQRVREACLQGNQAYWVCPLIEESEALQLATANDTYALMQEEFPELRIGLV 510

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HGRM   +K++VM  F  G  +LL+ATTVIEVG+DV +AS+++IE+AE  GL+QLHQLRG
Sbjct: 511 HGRMKPSEKQAVMAEFSAGHTQLLVATTVIEVGVDVPNASLMVIEHAERMGLSQLHQLRG 570

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           RVGRG   S+CILLY   LS+ +  RL V+  + DGF IA+ DL+ R  GE+LG++QSG+
Sbjct: 571 RVGRGAAKSTCILLYQNKLSETARARLKVIYESNDGFAIAQADLQIRGPGELLGVRQSGV 630

Query: 642 PKFLIAQPE 650
           P   IA  E
Sbjct: 631 PMLKIADLE 639


>gi|194290671|ref|YP_002006578.1| ATP-dependent DNA helicase recg [Cupriavidus taiwanensis LMG 19424]
 gi|193224506|emb|CAQ70517.1| ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG 19424]
          Length = 730

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 241/660 (36%), Positives = 363/660 (55%), Gaps = 30/660 (4%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRRPYKILLND 96
           R +DL+ + P  + D      I+E      + +   +      +    + RR   + L D
Sbjct: 55  RPVDLVLHLPMRYEDETTVVPIAEAIHRAGLGLPAQVEGEVVSNEVTFRPRRQLVVKLAD 114

Query: 97  GTGEITLLF--FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP 154
            +GE+TL F  FY           EG ++ V G+++       MVHP      + +    
Sbjct: 115 DSGELTLRFLNFYGSQ---TRQMAEGVRLRVRGEVRGGFFGAEMVHPTVRPVLAGEALPD 171

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHN 211
            +  VY    G+     +K I  AL+R P+   LP+ + +  L +     +AE   ++H 
Sbjct: 172 RLTPVYPSTAGIPQAYLRKAIGGALARTPLPETLPQAVLQGPLARLQLRPLAECLRLLHA 231

Query: 212 P----RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKIL 266
           P     +A   + + PA +R+ +DELLA QI+L       + +    +   EG +  + L
Sbjct: 232 PPPQESEAALADRSHPAWQRVKFDELLAQQISLRRAHAARRDKTAPTMPRREGGLLTRFL 291

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             +PF  T +Q+  + +I  DM+  + M R+LQGDVGSGKT+VA +A   A++AG QA +
Sbjct: 292 AALPFRLTGAQQRVVGEIAADMTLPHPMHRLLQGDVGSGKTIVAALAACQAIDAGYQAAL 351

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  ILA+QH+  +  + +   + V  + G+     +R A+ R+  G+A ++IGTHAL 
Sbjct: 352 MAPTEILAEQHFRKLSAWLEPLGVPVAWLAGSQKAREKRHAVARVESGEAQLVIGTHALI 411

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-------------TAPHVLLMTATPIPR 433
           QD++++ KL L +VDEQHRFGV QRL L  KA             T PH L+M+ATPIPR
Sbjct: 412 QDTVRFAKLGLSVVDEQHRFGVAQRLALRGKAGVAEAPAAISAAETVPHQLMMSATPIPR 471

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL +T   D+D+S I E P GR PI T ++   R DEVI R+    +EG++ YW+CP IE
Sbjct: 472 TLAMTYYADLDVSVIDELPPGRTPIVTRLVNDERRDEVIGRIHHAAAEGRQVYWVCPLIE 531

Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E +    ++ VE + +L        + ++HGR+   +K +VMD F     ++L+ATTVIE
Sbjct: 532 ESEALQLQTAVETYETLVAALPDLRVGLVHGRLPPAEKAAVMDDFSANRLQVLVATTVIE 591

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS  +  RL+ ++
Sbjct: 592 VGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAESVCLLMYQAPLSPTARERLATMR 651

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            T DGF IA  DL+ R  GE LG +QSG      A  +    L+E A+  A+ +L   P+
Sbjct: 652 ETTDGFEIARRDLEIRGPGEFLGARQSGEAMLRFADLQTDAWLVEYAQAAAELMLAHYPE 711


>gi|153855287|ref|ZP_01996453.1| hypothetical protein DORLON_02467 [Dorea longicatena DSM 13814]
 gi|149752286|gb|EDM62217.1| hypothetical protein DORLON_02467 [Dorea longicatena DSM 13814]
          Length = 677

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/668 (36%), Positives = 375/668 (56%), Gaps = 21/668 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +   +G+G+K      KI      N     DL+ Y+P  +        ISE+ E++I T+
Sbjct: 7   IGDLKGIGEKTKKLFEKI------NVHTVGDLIRYYPHGYDVYEEAVPISELEEDKIQTV 60

Query: 73  TGYISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI-K 130
           TG I          R     L + D TG + +++F  +   L+N    G  IT+ G++ +
Sbjct: 61  TGAIYGRVQVSGNSRMQVTTLHVKDLTGTLKVIWF--RMPFLRNTLSGGGVITLRGRVVR 118

Query: 131 KLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
           K    ++M HP   + +++ +     ++ VY L  GLS ++  K + +AL  L +  E +
Sbjct: 119 KKTGDLVMEHPEMFYPSAKYEEKLHTLQPVYGLTAGLSNNMVMKAMKQALDGLDLTREIL 178

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              L  K        A   IH P   +D E    ARERL ++E L   +++  ++++ ++
Sbjct: 179 PDSLRLKYGLAEYNYAVRGIHFP---EDKEVFYHARERLVFEEFLEFILSIRRLKEKNER 235

Query: 250 -EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +   P+    ++ QK L N+PF  T +Q+   K+I +D+     M R++QGDVGSGKT+
Sbjct: 236 LDNNYPMQSRPEV-QKFLENLPFELTGAQQKVWKEIEKDLGSDKTMSRLVQGDVGSGKTI 294

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRK 366
           VA++A+  A   G Q  +MAP  +LA+QHYE I K  ++  I   VE++TG+M    +R+
Sbjct: 295 VAVLALMNAAFNGYQGAMMAPTEVLARQHYENITKMFEDYDIPIKVELLTGSMTAKEKRR 354

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
           A +RI  G A IIIGTHAL Q ++ Y  L LVI DEQHRFGV+QR     K   PHVL+M
Sbjct: 355 AYDRIECGLAKIIIGTHALIQGAVSYDNLGLVITDEQHRFGVKQRETFALKGGEPHVLVM 414

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL +   GD+DIS I E PA R PIK  ++     ++    +K  ++EG++ Y
Sbjct: 415 SATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVDTGYRNKAYNFMKKQIAEGRQCY 474

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP +EE +     +V +   +L E     I  A +HG+M    K+ +MD F     ++
Sbjct: 475 VICPMVEESETMEAENVTDYTVALQEEMGDQIQVACLHGKMKQAQKDDIMDRFGRNEIQI 534

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVGIDV +A++++IENAE FGLAQLHQLRGRVGRG+  S CI +     SK +
Sbjct: 535 LVSTTVIEVGIDVSNATVMMIENAERFGLAQLHQLRGRVGRGKYQSYCIFM-SASKSKET 593

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL +L ++ DGF IA EDL+ R  G++ GI+QSG+  F +        +L++A + A 
Sbjct: 594 KERLDILNHSNDGFKIASEDLRLRGPGDLFGIRQSGLMNFKLGDIYQDAKILQMANEAAD 653

Query: 665 HILTQDPD 672
            +  +D +
Sbjct: 654 QLTEEDEE 661


>gi|189425013|ref|YP_001952190.1| ATP-dependent DNA helicase RecG [Geobacter lovleyi SZ]
 gi|189421272|gb|ACD95670.1| ATP-dependent DNA helicase RecG [Geobacter lovleyi SZ]
          Length = 765

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 259/696 (37%), Positives = 383/696 (55%), Gaps = 36/696 (5%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERIVTITG- 74
           +GVG K +  L+K          R + D LF  P  + DR     I ++         G 
Sbjct: 71  KGVGPKLAELLAK-------RGIRSVEDALFCLPHRYEDRRQLIPIRQLKPGSNHVFQGT 123

Query: 75  YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
            IS  S+     R+ ++ ++ D +G I L +F+     +K  +  GR+   TG++     
Sbjct: 124 VISTESTETRGGRKVFEAVVQDESGSIVLKWFHANGVWMKRTWQVGRQGVFTGELSSFGW 183

Query: 135 RIIMVHPHYIF----------HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           +  + HP   +            +  VNF  I  VY L  GL     ++++ + +   LP
Sbjct: 184 KPEVHHPDVEWLEKGTDVNAVMTADPVNFGRIVPVYPLTEGLHQKGMRRVMRQVVDTFLP 243

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIA 239
            L   + + LL+   +  + EA   +H P          E  + A   LA+DE    ++ 
Sbjct: 244 NLENILPQSLLETYQYLPLREALGQVHLPPSDAPLIDLNEGRTLAHRSLAFDEFFFWELG 303

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L ++    E GI   V  +  +++++ +PF  T +Q   + +I  DM   + M R++Q
Sbjct: 304 LALKKRGVALEEGISFRVTHRYTKELVKLLPFQLTAAQRRVLSEIKADMMASHPMHRLVQ 363

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVAL+A   AVE   Q  IMAP  ILA+QH+  I  +     + V ++T  M
Sbjct: 364 GDVGSGKTLVALMAALVAVENDYQVAIMAPTEILAEQHWHNIHHWCDQLGVNVVLLTSGM 423

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++AL+++A G+A I+IGTHA+ QD +++++L L IVDEQHRFGV QR  L +K  
Sbjct: 424 RGKVKKEALQQVADGRASIVIGTHAVIQDKVEFHRLGLGIVDEQHRFGVLQRGVLKKKGA 483

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P +L+MTATPIPRTL +T  GD+ +S I E P GR PI T I   +R  +V E +   +
Sbjct: 484 NPDILVMTATPIPRTLAMTLFGDLALSVIDELPPGRTPINTKIYFESRRKQVYEMIHQEI 543

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------AIIHGRMSDIDKESV 533
            +G++AY I P +EE ++S+ ++  +    + EH  + I       ++HGRM   +KE+V
Sbjct: 544 GQGRQAYVIYPLVEESEKSDLKAATQ----MAEHLQADIFPGLRLGLLHGRMKPEEKEAV 599

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M SFK     +L+ATTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRVGRG   SSCI
Sbjct: 600 MASFKKQELDILVATTVIEVGIDVPNATLMVIEHAERFGLSQLHQLRGRVGRGSHRSSCI 659

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LL    LS++   RL V++ T DGF IAE DL+ R  G+ LG +QSGMP F +A      
Sbjct: 660 LLTAGKLSEDGEKRLRVMEATTDGFRIAEADLEIRGPGDFLGTRQSGMPDFRVASILRDG 719

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           ++LE AR  A  +L +D  L S  GQ  RIL  L Q
Sbjct: 720 AILEQARSAAAKLLERDEQLHSSEGQ--RILQELLQ 753


>gi|282850344|ref|ZP_06259723.1| ATP-dependent DNA helicase RecG [Veillonella parvula ATCC 17745]
 gi|282579837|gb|EFB85241.1| ATP-dependent DNA helicase RecG [Veillonella parvula ATCC 17745]
          Length = 680

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 243/669 (36%), Positives = 381/669 (56%), Gaps = 33/669 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+T +G+G      L K+   G  N T    LL Y P ++ DR     I ++       +
Sbjct: 5   LTTIKGIGPGREKQLHKL---GITNVT---SLLTYFPRTYEDRRTIYSIGDLKSGMTGGV 58

Query: 73  TGYISQHSSFQLQKRRP------YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            G +       +Q++RP       ++++ DGTG + ++ F +  +  KN + +G++I   
Sbjct: 59  VGTV-----IAVQEKRPRPRLSILEVVIADGTGPLKIVLFNQGYK--KNFYKKGQRIYAY 111

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           GK +     + M  P     N  D   P   I  +Y+L  G+S  + +  +    +    
Sbjct: 112 GKAEFQYGYMQMNTPQ--MENLGDGGEPDRGIVPIYALADGVSQFVVRSTVRNWFAANHE 169

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE +  ++ +   + S  +AF ++H P  ++ +E    AR +L+Y+EL   Q  L L+R
Sbjct: 170 LPEILPVEVREDHHYMSRYDAFKMMHFPDSSELYE---KARYQLSYEELFVMQAGLALLR 226

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            + +   G  +   G++  + + N+PFS T  Q+ A++DI  DM  +  M R+LQGDVGS
Sbjct: 227 NKEQCHRGPKMGPNGELMAQCIENLPFSLTGDQQRALEDIRIDMEDERPMQRLLQGDVGS 286

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA +++  A+E G Q  +MAP  ILA QHYE I+    N  I +E++TG+  +  +
Sbjct: 287 GKTIVATLSLLKAIENGYQGALMAPTEILAAQHYEGIRTVCANLGITIELLTGSSTKKEK 346

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
               E +A G+  +IIGTHAL Q+ + ++ L LVI+DEQHRFGV QR +L QK T PHVL
Sbjct: 347 ECIYEGLADGRIQMIIGTHALIQEGVNFHNLGLVIIDEQHRFGVDQRARLQQKGTYPHVL 406

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRT+ L+  GD+ +S I E P GRKP+KT  +  +  + +       ++EG++
Sbjct: 407 IMTATPIPRTMTLSVYGDLAVSLIKEMPPGRKPVKTYAVDSSYKERLRTFFGKEMAEGRQ 466

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP +EE ++ + ++  E +  L E+F  +  + ++HGRM   +K+ VM++F  G  
Sbjct: 467 VYVVCPLVEESEKLDLQAAEELYLELKEYFYKAYEVGLVHGRMKPSEKDEVMNAFHRGEI 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL++TTVIEVG++V +A+I+ +E AE FGL+QLHQLRGRVGRG   S CIL+     SK
Sbjct: 527 SLLVSTTVIEVGVNVPNATIMCVEGAERFGLSQLHQLRGRVGRGAHQSYCILVSD---SK 583

Query: 603 N--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           N  S  RL +++  +DGF +AE+DL  R  G++ G+ QSG+P   +A       +L  AR
Sbjct: 584 NDVSQERLKLMEQIQDGFELAEQDLLIRGSGQLFGLAQSGLPDLRVANIIKDIEILVKAR 643

Query: 661 KDAKHILTQ 669
           KD      Q
Sbjct: 644 KDVLDFANQ 652


>gi|254178770|ref|ZP_04885424.1| ATP-dependent DNA helicase RecG [Burkholderia mallei ATCC 10399]
 gi|160694684|gb|EDP84692.1| ATP-dependent DNA helicase RecG [Burkholderia mallei ATCC 10399]
          Length = 904

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/662 (37%), Positives = 371/662 (56%), Gaps = 29/662 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 231 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 290

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +A
Sbjct: 291 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 346

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+P
Sbjct: 347 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 406

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263
               D     + T PA  R+ +DELLA Q++L    ++ +      +    +     ++ 
Sbjct: 407 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALSA 466

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 467 RLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 526

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTH
Sbjct: 527 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 586

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRT
Sbjct: 587 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 646

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE
Sbjct: 647 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 706

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 707 SETLQLQTAVETYETLAVALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 766

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ 
Sbjct: 767 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 826

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++
Sbjct: 827 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEV 886

Query: 674 TS 675
            +
Sbjct: 887 VA 888


>gi|325917666|ref|ZP_08179860.1| ATP-dependent DNA helicase RecG [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536130|gb|EGD07932.1| ATP-dependent DNA helicase RecG [Xanthomonas vesicatoria ATCC
           35937]
          Length = 714

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 254/711 (35%), Positives = 388/711 (54%), Gaps = 54/711 (7%)

Query: 2   RPSFLNPLFA-----PLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDR 55
           R S   P  A     PLS+  GVG K +  F ++ I           DL  + P  + DR
Sbjct: 3   RASVATPSLAVAGQVPLSSLPGVGPKVADKFAARGI-------LSVQDLWLHLPLRYEDR 55

Query: 56  HYRPKISEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEM 112
                I+++       I G +      F+    RP  ++ ++D + G + L FF+ +   
Sbjct: 56  TRLTTIAQLQSGVPAQIEGRVEAVERGFRF---RPVLRVAISDDSHGSVVLRFFHFRAAQ 112

Query: 113 LKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDL 170
           +   F  G ++ V G  K  +N   +VHP Y +    +D +    ++ VY +  G+    
Sbjct: 113 VAQ-FAVGTRVRVFGMPKPGQNGWEIVHPSYRVLAADEDADLGDCLDPVYPVLEGVGPAT 171

Query: 171 FKKIIVEALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FE 219
            +K+I +AL RLP       + P W     LQ +  PS+  A   +H P    D      
Sbjct: 172 LRKLIGQALERLPPEAALELLPPHW-----LQDERLPSLRSALLTMHRPPVNTDPQQLLA 226

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
              PA++RLA +ELLA Q++L   R   ++     +   G + +++   +PF  T +Q+ 
Sbjct: 227 GGHPAQQRLALEELLAHQLSLRRQRIALQRFHAPVLPGNGTLVRRLRAALPFQLTGAQQR 286

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             + I  D++Q + MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH  
Sbjct: 287 VFEQIAHDLAQPSPMLRLVQGDVGSGKTVVAAMAAMLAVEQGKQVALAAPTELLAEQHLT 346

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            ++ + +   + +  + G +    R  A+  +A GQA +++GTHAL Q+++ +  L L I
Sbjct: 347 NLRGWLEPLGVRIVWLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQEAVVFRDLALAI 406

Query: 400 VDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
           +DEQHRFGV QRL L  K  A    PH L+MTATPIPRTL +++  D+D+S I E P GR
Sbjct: 407 IDEQHRFGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGR 466

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-----------FRSVV 504
            P++T+++   R  +++ER++   +EG++AYW+C  IEE ++              ++  
Sbjct: 467 TPVQTIVLSAERRPDLVERIRAACAEGRQAYWVCTLIEESEDPGKAAPAGPPRIEAQAAE 526

Query: 505 ERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
             F +L E      +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++
Sbjct: 527 VTFQALSEQLPGVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLM 586

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           IIENAE  GLAQLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+
Sbjct: 587 IIENAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEK 646

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           DL+ R  GE+LG +Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 647 DLELRGPGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLAEAPEIA 697


>gi|300725269|ref|YP_003714598.1| DNA helicase [Xenorhabdus nematophila ATCC 19061]
 gi|297631815|emb|CBJ92536.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Xenorhabdus nematophila ATCC 19061]
          Length = 693

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/659 (37%), Positives = 377/659 (57%), Gaps = 44/659 (6%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+T RGVG      ++K+   G  N    +  L      + D+ +   I+E+      T+
Sbjct: 11  LTTLRGVGTNQ---VTKLAKLGLVNLQDLLLHLP---LRYEDQTHLYTINELLPGIYATV 64

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
           TG + + ++    +RR     ++DGTG +TL FF   T  +KN   EG+ I   G+I++ 
Sbjct: 65  TGEVLR-TNVVFGRRRIMTCQISDGTGVLTLRFF-NFTAAMKNNLAEGKHIVAYGEIRRG 122

Query: 133 KNRIIMVHPHYIFHNS------QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL---- 182
                ++HP Y           QD   P    VY    G+     +K+I +AL  L    
Sbjct: 123 NQGPEIIHPEYKVQQHAARVQLQDTLTP----VYPTTEGVRQTTLRKLIEQALEILDTCA 178

Query: 183 --PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELL 234
              +LPE   ++++      S+  A +++H P    D   T       PA+ RL  +ELL
Sbjct: 179 VNELLPEEFSRNMI------SLPNALHMLHRP--PPDISLTDLENGRHPAQRRLILEELL 230

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A  +++L +R   ++    P++ +  + Q++L  +PFSPT +Q   + +I  D+ +   M
Sbjct: 231 AHHLSMLAVRAGAQRFHAQPLSADDTLKQQLLSQLPFSPTGAQARVVAEIEHDLEKNVPM 290

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           +R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V  
Sbjct: 291 MRLIQGDVGSGKTLVAALAAVRAMVHGKQVALMAPTELLAEQHANTFRQWLEPLGMQVGW 350

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           + G      R+   E IA GQ ++IIGTHA+FQ+ +++  L LVI+DEQHRFGV QRL L
Sbjct: 351 LAGKQKGKARQAQQEAIASGQVNMIIGTHAMFQEQVKFAGLALVIIDEQHRFGVHQRLAL 410

Query: 415 TQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R ++
Sbjct: 411 WEKGREQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRRND 470

Query: 471 VIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528
           +I+R+K   L EG++AYW+C  IE+ +    ++       L        I ++HGRM   
Sbjct: 471 IIQRIKSACLEEGRQAYWVCTLIEDSEVLEAQAAQATSEELALALPELKIGLVHGRMKSA 530

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +K+++M++FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG  
Sbjct: 531 EKQAIMEAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAI 590

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
            S C+LLY  PL+  +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F IA
Sbjct: 591 ASHCVLLYKTPLTHTAKIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNTEFRIA 649


>gi|121599993|ref|YP_991657.1| ATP-dependent DNA helicase RecG [Burkholderia mallei SAVP1]
 gi|124384498|ref|YP_001027152.1| ATP-dependent DNA helicase RecG [Burkholderia mallei NCTC 10229]
 gi|126451131|ref|YP_001082101.1| ATP-dependent DNA helicase RecG [Burkholderia mallei NCTC 10247]
 gi|121228803|gb|ABM51321.1| ATP-dependent DNA helicase RecG [Burkholderia mallei SAVP1]
 gi|124292518|gb|ABN01787.1| ATP-dependent DNA helicase RecG [Burkholderia mallei NCTC 10229]
 gi|126244001|gb|ABO07094.1| ATP-dependent DNA helicase RecG [Burkholderia mallei NCTC 10247]
          Length = 902

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/662 (37%), Positives = 371/662 (56%), Gaps = 29/662 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 229 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 288

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +A
Sbjct: 289 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 344

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+P
Sbjct: 345 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 404

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263
               D     + T PA  R+ +DELLA Q++L    ++ +      +    +     ++ 
Sbjct: 405 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALSA 464

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 465 RLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 524

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTH
Sbjct: 525 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 584

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRT
Sbjct: 585 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 644

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE
Sbjct: 645 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 704

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 705 SETLQLQTAVETYETLAVALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 764

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ 
Sbjct: 765 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 824

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++
Sbjct: 825 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEV 884

Query: 674 TS 675
            +
Sbjct: 885 VA 886


>gi|53726168|ref|YP_103944.1| ATP-dependent DNA helicase RecG [Burkholderia mallei ATCC 23344]
 gi|52429591|gb|AAU50184.1| ATP-dependent DNA helicase RecG [Burkholderia mallei ATCC 23344]
          Length = 686

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/662 (37%), Positives = 371/662 (56%), Gaps = 29/662 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 13  TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 72

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +A
Sbjct: 73  AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 128

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+P
Sbjct: 129 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 188

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263
               D     + T PA  R+ +DELLA Q++L    ++ +      +    +     ++ 
Sbjct: 189 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALSA 248

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 249 RLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 308

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTH
Sbjct: 309 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 368

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRT
Sbjct: 369 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 428

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE
Sbjct: 429 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 488

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 489 SETLQLQTAVETYETLAVALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 548

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ 
Sbjct: 549 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 608

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++
Sbjct: 609 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAATRLIAAHPEV 668

Query: 674 TS 675
            +
Sbjct: 669 VA 670


>gi|160871992|ref|ZP_02062124.1| ATP-dependent DNA helicase RecG [Rickettsiella grylli]
 gi|159120791|gb|EDP46129.1| ATP-dependent DNA helicase RecG [Rickettsiella grylli]
          Length = 721

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 245/659 (37%), Positives = 371/659 (56%), Gaps = 39/659 (5%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           GVG K S +L K   CG  +    +  L      + +R     I  + E +   ITG I 
Sbjct: 28  GVGPKISHYLHK---CGIHHLQDLLLHLP---LRYENRTQLTPIRSVREGQHALITGIIQ 81

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
            H   +++ ++ Y   L+D TG +TL FF+ K + ++  F +G ++   G I   KNR  
Sbjct: 82  DHP-LRIKNKKSYSCKLSDETGSVTLRFFHLKAKQIQQ-FKKGLRLLCFGPIHAQKNRFF 139

Query: 138 ---MVHPHYIF---HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--------- 182
              M+HP Y F   H S  +  P + ++Y    G++  L+ K+I +    L         
Sbjct: 140 EREMIHPDYEFLRPHQSPLLP-PYLTSIYPSTPGMTQRLWHKLITQVFHLLFEMTTEKPF 198

Query: 183 -----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP----ARERLAYDEL 233
                   P+++ + LL++ + PS+ +A   IH P      +  +     A++RLA +EL
Sbjct: 199 VHKQQHYFPDYLPEHLLKRIALPSLLDALYYIHRPPANAPLDLLARRKHIAQQRLALEEL 258

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA  +++  M+K+    I     +   + ++    +PF  T SQ+  IK+I QDM +   
Sbjct: 259 LAHSLSVQQMKKKRAAGIAPRFKLNSALMKRFQTALPFQLTSSQQRIIKEINQDMQRATP 318

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA  A   A+    Q  +MAP  +L++QHY+   ++       V 
Sbjct: 319 MQRLLQGDVGSGKTIVAAFAALLAIANHYQVALMAPTELLSEQHYQHFHRWLTPLGFHVV 378

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            +   +    +++ L+ I  G+AHI IGTHALFQ+ + +  L  +I+DEQHRFGV+QRL 
Sbjct: 379 CLNARLQTTAKKQILDEIKTGKAHIAIGTHALFQNEVYFSNLGFIIIDEQHRFGVKQRLD 438

Query: 414 L----TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L     QK    H L MTATPIPRTL +TS  D+DIS + E P GR P+KT++IP  R  
Sbjct: 439 LWKKSQQKNLQAHQLFMTATPIPRTLAMTSFTDLDISFLDELPPGRLPVKTLVIPERRRS 498

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528
           +VIE++++   E K+ YW+CP IEE    ++++    F +L    T   + +IHGR+   
Sbjct: 499 KVIEKVRITCGEKKQVYWVCPLIEESGLQHYQAAETLFKTLKADLTDLRLGLIHGRLHST 558

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +KES+M  FK G   LL++T++IEVG+DV +A++++IENAE  GLAQLHQLRGRVGR   
Sbjct: 559 EKESIMRDFKKGVIDLLVSTSIIEVGVDVSNANLMVIENAERLGLAQLHQLRGRVGRSSS 618

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
            S CILLY   LS  +  RLS+++ + DGF IA++DL+ R  GEI G++Q+G  +  IA
Sbjct: 619 KSCCILLYQ-SLSLLAKERLSIMRLSNDGFTIAQKDLELRGPGEIWGLRQTGWKQLRIA 676


>gi|289422304|ref|ZP_06424154.1| ATP-dependent DNA helicase RecG [Peptostreptococcus anaerobius
           653-L]
 gi|289157249|gb|EFD05864.1| ATP-dependent DNA helicase RecG [Peptostreptococcus anaerobius
           653-L]
          Length = 685

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 247/650 (38%), Positives = 375/650 (57%), Gaps = 23/650 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           D LFY P  F DR    K+ ++ +   V I   I + SS +++K    ++ + D T    
Sbjct: 33  DALFYFPRQFEDRSRVKKVFQLEDGEKVAIEVKIERISSRRVRKLSITELFVKDDTKACK 92

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
           L+FF +    L+N F  G ++ V G +K     I+ +H   I ++  D N  +I  VY L
Sbjct: 93  LVFFNKG--YLRNTFRVGDEVKVFGTVKIRPTGIVEMHNCEIEYDKLDKNTGIIIPVYKL 150

Query: 163 PTGLS-VDLFKKIIVEALSRLP------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
             G++  D+    ++  +  +P       LP+WI    + K +   I  A   +H P K 
Sbjct: 151 SNGVTNKDVMG--MIRNIFEMPDIKIKEYLPQWI----IDKYNLCDINFAIKSMHFPEKK 204

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
              E    A  RL ++ELL  Q+ L  ++   +   GI   V  K  + I   + F  T+
Sbjct: 205 ---ENVKIAMFRLIFEELLFLQLGLFTIKGDNRIASGISQPVH-KDLKAIENGLGFKLTR 260

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q+ A  DIL+DM     M R++QGDVGSGKT VA +A+A  V  G Q   MAP  ILA 
Sbjct: 261 AQQRAYDDILRDMESGKVMNRLVQGDVGSGKTAVAQLALANTVLNGYQGAYMAPTEILAN 320

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QH+E    + +NT I VE++TG++ +       ER+ +G+  I+IGTHAL +D +++ KL
Sbjct: 321 QHFESFLDFFKNTPIRVELLTGSVSKKRSEDIRERLKNGEIDILIGTHALIEDKVEFNKL 380

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LVI DEQHRFGV+QR +LT KA +P VL+MTATPIPRTL L   GD+DIS I E P GR
Sbjct: 381 GLVITDEQHRFGVRQRGRLTAKALSPDVLVMTATPIPRTLALILYGDMDISIIDELPPGR 440

Query: 456 KPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           + I T+ +  ++ D   ER ++  +  G + Y +CP +EE +  + +SV E ++ L   F
Sbjct: 441 QKIDTIAVYEDKRDIYYERNIRKEVEMGHQVYVVCPLVEESEVLDVKSVTEVYDELQYRF 500

Query: 515 TSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
            +   I ++HG+M   +K+ VM++FKN    +L++TTVIEVG++V +A+I+++ENAE FG
Sbjct: 501 FTDLRIGLLHGKMKPSEKDEVMEAFKNHELDILVSTTVIEVGVNVPNATIMVVENAERFG 560

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LAQLHQLRGRVGRG+  S C L+Y    S     R+ +++ T DGF+I+E+DL+ R  G+
Sbjct: 561 LAQLHQLRGRVGRGKSKSYCCLIYKSR-SDVCKKRMDIMEETNDGFVISEKDLEIRGPGD 619

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
             G +Q G+P+  +A    H  +L + + +A+ I ++DP L  V  + +R
Sbjct: 620 FFGTRQHGLPELKVANLFKHIKILRMVQLEAREIYSKDPGLDFVENKGLR 669


>gi|238562011|ref|ZP_00441106.2| ATP-dependent DNA helicase RecG [Burkholderia mallei GB8 horse 4]
 gi|238523487|gb|EEP86925.1| ATP-dependent DNA helicase RecG [Burkholderia mallei GB8 horse 4]
          Length = 902

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/662 (37%), Positives = 371/662 (56%), Gaps = 29/662 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 229 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 288

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +A
Sbjct: 289 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 344

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+P
Sbjct: 345 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 404

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263
               D     + T PA  R+ +DELLA Q++L    ++ +      +    +     ++ 
Sbjct: 405 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALSA 464

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 465 RLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 524

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTH
Sbjct: 525 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 584

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRT
Sbjct: 585 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 644

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE
Sbjct: 645 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 704

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 705 SETLQLQTAVETYETLAVALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 764

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ 
Sbjct: 765 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 824

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++
Sbjct: 825 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAATRLIAAHPEV 884

Query: 674 TS 675
            +
Sbjct: 885 VA 886


>gi|167040378|ref|YP_001663363.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter sp. X514]
 gi|300914462|ref|ZP_07131778.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter sp. X561]
 gi|307724302|ref|YP_003904053.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter sp. X513]
 gi|166854618|gb|ABY93027.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter sp. X514]
 gi|300889397|gb|EFK84543.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter sp. X561]
 gi|307581363|gb|ADN54762.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter sp. X513]
          Length = 681

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 256/675 (37%), Positives = 392/675 (58%), Gaps = 24/675 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           PL   +   +GVG K +  L K+ IN          DLLFY P  + +R    KI ++  
Sbjct: 2   PLNLDIQYVKGVGPKRAKLLKKLGINTVE-------DLLFYFPKDYENRSDILKIEDLKV 54

Query: 67  ERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               T  GYI+      +  K    K+ + DGTG + L+++      +KN F  G +  +
Sbjct: 55  GEKQTFRGYIAGSPREIKTSKVIITKVPVKDGTGVVELVWY--NQPYIKNNFKIGEEYII 112

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182
            GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   +
Sbjct: 113 NGKLQFKYGQLIVENP--VLEKSEDFKLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 170

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E+ +++ L +K    I  A   I+ P+      +   A+ R  Y EL   Q+AL L
Sbjct: 171 QEVEEFFDEEFLSEKGLMDIKNALININFPQNEA---YLEQAKYRFKYQELFLLQMALFL 227

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M++  K++ GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++QGDV
Sbjct: 228 MKRSVKEKKGIKF--EQADLKPFLMGLPFKLTLAQIKVLKEIIADMNSHKVMNRLVQGDV 285

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  +
Sbjct: 286 GSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPS 345

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
           ++++ LE+I +G   I++GTHAL +D++ +  L L I DEQHRFGV+QR  LTQK   P 
Sbjct: 346 NKKEVLEKIKNGDYDIVVGTHALIEDNVIFNNLGLCITDEQHRFGVRQRALLTQKGENPD 405

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRT  L   GD+DIS I + P GRK +KT +I  +  ++  E     + +G
Sbjct: 406 VLVMTATPIPRTFALILYGDLDISIIDQLPPGRKKVKTYVISSSVREKAYEFAMKEVKKG 465

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNG 540
           ++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F NG
Sbjct: 466 RQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMADSDKEKVMEEFVNG 525

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG++V +A+++I+ENAE FGLAQLHQLRGRVGR E  S CIL+ +   
Sbjct: 526 KIDILVSTTVIEVGVNVPNATVMIVENAERFGLAQLHQLRGRVGRSEFQSYCILISYSN- 584

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S  +  RL VL  T DGF IAE+DL+ R  GE LG++Q G+P+F IA       +LE  +
Sbjct: 585 SDIAKKRLGVLAQTSDGFKIAEKDLEIRGPGEFLGLRQHGLPEFKIANIFEDIDVLERVQ 644

Query: 661 KDAKHILTQDPDLTS 675
           KD + +L +DP L +
Sbjct: 645 KDVEELLEKDPKLEN 659


>gi|126700178|ref|YP_001089075.1| ATP-dependent DNA helicase RecG [Clostridium difficile 630]
          Length = 689

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 249/674 (36%), Positives = 389/674 (57%), Gaps = 18/674 (2%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +L  L+  +   +G+G K +  L+K+            DLL+Y P  F DR+   KI+++
Sbjct: 3   YLLDLYKDVQYVKGIGPKKADKLNKL------GIFTLKDLLYYFPRQFEDRNNLKKIAQL 56

Query: 65  SEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            +   VTI   IS  ++F  ++     KI + D TG   L+FF +    +KN F  G  I
Sbjct: 57  EDGEKVTIKAVISSINTFSPKEGMTLTKIDVKDETGSAKLVFFNK--SYIKNTFRPGDSI 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182
            V GK+KK  N + +      +  +   N      VY L  G++      II   L  + 
Sbjct: 115 LVFGKVKKKFNNLELTSCELEYLTNSPKNTCRFMPVYQLTYGVTNKEIMSIIRTVLEDKE 174

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            ++ E++ + +++K    SI  A   IH+P   +  +    A  R+ ++ELL  Q+ L +
Sbjct: 175 LIIQEYMPQRIIEKYRLCSIDFAVRNIHSPSSKESLKI---ALYRIVFEELLILQLGLFV 231

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +    KE GI      K  +KI+  +PF  TK+Q  A+ +I+QDM+ +  M R++QGDV
Sbjct: 232 FKSGRNKEDGIKFET-SKDLKKIISALPFKLTKAQNRALDEIIQDMNLEKIMNRLVQGDV 290

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VAL+A+A  V  G Q  +MAP  ILA QHY  + +  ++  I V ++ G++ + 
Sbjct: 291 GSGKTVVALLALANCVLNGYQGALMAPTEILAGQHYISLTESLKDFGINVGLLIGSLTKK 350

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +   LE+I + +  I+IGTHAL +D +++  + LVI DEQHRFGV QR KL+ K   P 
Sbjct: 351 QKDTVLEQIKNNEIDILIGTHALIEDKVEFNNIGLVITDEQHRFGVMQRSKLSLKGANPD 410

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KVVLSE 481
           +L+MTATPIPRTL L   GD+DIS I E P GR+PI+T+ I  ++ D     L +  +  
Sbjct: 411 ILVMTATPIPRTLALILYGDLDISIIDELPPGRQPIETIAIEKSKRDRAYNNLVRREVES 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           G++ Y +CP +EE +    +S VE    L  E+F    + ++HG+M   +K+ VM  FK+
Sbjct: 471 GRQVYIVCPLVEESEAIEAKSAVELVEELRAEYFHDLRLGLLHGKMKSSEKDEVMRLFKD 530

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L++T VIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG   S C+L+Y   
Sbjct: 531 KEIDILVSTIVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGSHKSYCVLIYDSK 590

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +     R+++++ T DGF I+E+DL+ R  GE  G +Q G+P+  +A    H  +L++A
Sbjct: 591 -TDVCRQRMAIMEETNDGFKISEKDLEIRGPGEFFGTRQHGLPELKVANLFKHIKILKLA 649

Query: 660 RKDAKHILTQDPDL 673
           +++A++IL +D +L
Sbjct: 650 QQEARYILGEDNNL 663


>gi|300690475|ref|YP_003751470.1| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07]
 gi|299077535|emb|CBJ50161.2| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07]
          Length = 729

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 250/666 (37%), Positives = 373/666 (56%), Gaps = 43/666 (6%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ------HSSFQLQKRRPYKIL 93
           R +DL+ + P  + D      +  I+E      TG+ +Q       +   L+ RR   + 
Sbjct: 55  RDVDLVLHLPMRYEDET---TLLTIAEAVARANTGWAAQVEGGVTRNEVALRPRRQLVVH 111

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           + D +GE+ L F       +K    EG ++ V G+++       MVHP  +   + D   
Sbjct: 112 IADDSGELVLRFLNFYGSQVKQ-MAEGVRLRVRGEVRGGFFGAEMVHP-TVRAVAPDEPL 169

Query: 154 P-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP----SIAEAFNI 208
           P  +  VY    G++    +K I+ AL R P LPE +  +L++    P    + AEA  +
Sbjct: 170 PDRLTPVYPSTAGVAQAYLRKAILNALGRTP-LPETLPDNLMRGPLAPLKLMAPAEAVRL 228

Query: 209 IHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPI----NVEG 259
           +H P    D     E T PA  R+ +DELLA Q++L   R Q  +     P+      +G
Sbjct: 229 LHQPTPDVDEHSLIERTHPAWLRIKFDELLAQQLSL--KRAQAARRTRSAPVLRTGGADG 286

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            +A + +  +PF  T +Q    ++I  D+++   M R+LQGDVGSGKT++A +A   A++
Sbjct: 287 LLA-RFMAALPFKLTGAQARVWEEIRADLARPYPMQRLLQGDVGSGKTVIAALAACQAID 345

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           AG QA +MAP  +LA+QHY  +  + +   + +  + G++ +  + +A  R+A G A ++
Sbjct: 346 AGWQAALMAPTELLAEQHYRKLSAWLEPLGVEIVWLAGSLKRKQKDEAAARVAAGAAQLV 405

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-----------PHVLLMTA 428
           IGTHAL QD++ + +L L +VDEQHRFGV QRL L  KA             PH L+M+A
Sbjct: 406 IGTHALIQDTVAFARLGLAVVDEQHRFGVAQRLALRGKAGGADTPIAETAQVPHQLMMSA 465

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T   D+D+S I E P GR P+ T ++   R DEVIER+     EG++ YW+
Sbjct: 466 TPIPRTLAMTYYADLDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYWV 525

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           CP IEE +    ++ VE F +L +      + ++HGR+  +DK +VM +F  G   +L+A
Sbjct: 526 CPLIEESEALQLQTAVETFETLSQSLAGLKVGLVHGRLPSVDKAAVMSAFAGGELHVLVA 585

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S CILLY  PLS  +  R
Sbjct: 586 TTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQAPLSPTAKQR 645

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHI 666
           L  ++ T DGF IA  DL  R  GE LG +QSG      A    HD+ ++E A+  A+ +
Sbjct: 646 LQTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLN-HDAWMVEFAQGAAEQM 704

Query: 667 LTQDPD 672
           L + P+
Sbjct: 705 LARFPE 710


>gi|72382000|ref|YP_291355.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str.
           NATL2A]
 gi|72001850|gb|AAZ57652.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str.
           NATL2A]
          Length = 846

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 259/701 (36%), Positives = 395/701 (56%), Gaps = 57/701 (8%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + +S+ +GVG K +  LS +            DL+ Y P  ++D      I +    +
Sbjct: 147 LQSTISSVKGVGSKQAERLSTL------GLILIRDLINYFPRDYVDYSSLKTIDKTQAGQ 200

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTG--EITLLFFYRKTEML------KNVF 117
            VTI   + + SSF+  K     IL   + D TG  +IT  F  R++  +      ++++
Sbjct: 201 NVTIVAKVRRCSSFKSPKNPNLAILELFIKDKTGGMKITRFFAGRRSSSIAYVKSQQSLY 260

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE------------------AV 159
             G  + V+G +K+ K               + +N PLIE                   V
Sbjct: 261 PVGATVAVSGLVKESKY-------------GKSLNDPLIEIIDSPNDYLKSRTIGQILPV 307

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           YSL  G++ D F+ +I   L     + + + K+ L +   P+  EAF  IHNP  +    
Sbjct: 308 YSLTEGITADKFRDLIQSILYLTSNIKDPLPKETLNRLDLPNRKEAFFHIHNPENSMTL- 366

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ---KILRNIPFSPTKS 276
             + A+ R+ +DE L  Q++LLL R   KK     +++E  I     K L  +PFS T +
Sbjct: 367 --AKAKRRIVFDEFLLLQLSLLLRRDLHKKSDSPQLSIEPNINSLVGKFLSILPFSLTNA 424

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   +K+I  D+ +   M R+LQGDVGSGKT++A+ A+  AV++G Q   MAP  +LA Q
Sbjct: 425 QRRVLKEIESDIVKAEPMSRLLQGDVGSGKTVIAISALLTAVQSGWQGAFMAPTEVLASQ 484

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H++ + K+    +I V+++TG+ P++ R++ L  + +G   I++GTHALF+D + + +L 
Sbjct: 485 HFQTLSKWIPQLEINVDLLTGSTPKSRRKQILTDLVNGSTKILVGTHALFEDPVVFERLG 544

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LV+VDEQHRFGV+QR KL  K   PH+L MTATPIPRTL LT  GD+D+S++ E P GR 
Sbjct: 545 LVVVDEQHRFGVKQRNKLLNKGLQPHLLTMTATPIPRTLALTLHGDLDVSQLDELPPGRT 604

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PI T +I  N      + ++  + +G + Y + P IEE ++    S V+    L     S
Sbjct: 605 PINTQLISPNEKKYAYDLIRSEIKKGHQIYVVLPLIEESEKLELSSAVDVHYQLSTEIFS 664

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             ++ ++HG+M  ++K+ V+ +F N    +L++TTVIEVG+DV +AS+++IE+++ FGLA
Sbjct: 665 EFNVELLHGKMKSVEKQEVIQNFINKKSDILVSTTVIEVGVDVPNASVMLIEDSDRFGLA 724

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG   S C LL H   +K S  RL VL N+ DGF I+E DL+ R  G++L
Sbjct: 725 QLHQLRGRVGRGASKSYC-LLSHQNKNKLSRQRLDVLVNSNDGFEISEIDLRFRGPGQVL 783

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           G KQSG+P F +A       +LEIARK+A+ IL  DP L++
Sbjct: 784 GTKQSGLPDFALASLADDADVLEIARKEARIILDSDPLLSN 824


>gi|331091213|ref|ZP_08340054.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404660|gb|EGG84199.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 686

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/690 (35%), Positives = 387/690 (56%), Gaps = 28/690 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISE 66
            + +S  +GVG+K      K  I   G        DL+ Y P ++ D + +P +ISE+ E
Sbjct: 4   LSNISELKGVGEKTEKLFYKLGIFTVG--------DLIRYFPRTY-DVYEKPVEISEVEE 54

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            R VT+TG I      Q+   R  +I    L D +G + +++F  +   LKN    G  I
Sbjct: 55  GRTVTVTGTI--WGVVQVTGTRAMQITTLTLKDISGTLKVIWF--RMPFLKNTLRSGSVI 110

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           T+ GK+ K K  + M  P   + +S+       ++ VY L  G++  +  K+  +AL  L
Sbjct: 111 TLRGKVTKRKRVLTMEQPEIFYPSSKYQEKENTLQPVYPLTAGITNHMIAKMEQQALENL 170

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            +  E +  ++  +        A   IH P+  +++ +   ARERL ++E L   ++L  
Sbjct: 171 DLKKEILPAEIRLRYHLAEYNYAVRGIHFPKNKEEYYY---ARERLVFEEFLLFILSLRQ 227

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           ++++ ++       V  K  ++ L  +P+  T +Q+   ++I +D++ +  M R++QGDV
Sbjct: 228 LKEKKERMQNTFSFVMPKEIEEFLDQLPYELTNAQKKVWEEIKRDITGEKVMTRLVQGDV 287

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMP 360
           GSGKT++AL+ +      G Q  +MAP  +LA+QHY  I++      I   VE++TG+M 
Sbjct: 288 GSGKTIIALLGLMLVGLNGYQGAMMAPTEVLAKQHYHSIREMLDKYHIPLKVELLTGSMA 347

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +R A E+I  G+A +I+GTHAL Q+ ++Y  L LVI DEQHRFGV+QR KL++K   
Sbjct: 348 AKEKRIAYEKIGTGEADLIVGTHALIQEKVEYKNLALVITDEQHRFGVKQREKLSEKGNT 407

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH+L+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++  +      E +K  + 
Sbjct: 408 PHILVMSATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVDTSYRKTAYEFMKKQIG 467

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFK 538
           +G++ Y ICP +EE +     +V +   +L E     I +  +HG+M    K+ +M+ F 
Sbjct: 468 QGRQCYVICPMVEESETLEAENVTDYAKALQEELGEQIHVQYLHGKMKQAQKDEIMERFA 527

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               ++L++TTVIEVGI+V +++I++IENAE FGLAQLHQLRGRVGRGE  S CI +   
Sbjct: 528 RNDVQVLVSTTVIEVGINVPNSTIMMIENAERFGLAQLHQLRGRVGRGEHQSYCIFMTGT 587

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             SK +  RL +L  + DGF IA EDLK R  G++ GI+QSG+  F +A        L+ 
Sbjct: 588 K-SKETKKRLEILNKSNDGFKIAGEDLKLRGPGDLFGIRQSGILDFKLADVFQDAKTLQN 646

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLY 688
           A + A  +L  DPDL     +++R  L  Y
Sbjct: 647 ANEAANQLLEDDPDLEREENENLRKYLQKY 676


>gi|295675566|ref|YP_003604090.1| ATP-dependent DNA helicase RecG [Burkholderia sp. CCGE1002]
 gi|295435409|gb|ADG14579.1| ATP-dependent DNA helicase RecG [Burkholderia sp. CCGE1002]
          Length = 762

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 250/661 (37%), Positives = 371/661 (56%), Gaps = 31/661 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I  +    +    G +  +     + RR   + L D  
Sbjct: 89  TRDIDLVLHLPMRYEDETSLTPIGHLLPGGVAQTEGVVFDNE-IAYRPRRQLLVKLRDAE 147

Query: 99  G-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
           G E+ L F       +K     G ++ V G ++     + MVHP        D + PL +
Sbjct: 148 GDELVLRFLNFYGSQVKQ-MAPGARLRVRGDVRGGFFGMEMVHPTV---RVVDEDTPLPQ 203

Query: 158 A---VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
           A   VY    G+S    +K I  AL+R  LP +LP  + +  L+    P++ +A   +H+
Sbjct: 204 ALTPVYPSTAGVSQAYLRKAIDNALARTSLPELLPAPVARAFLEPLGVPALMDAVRTLHH 263

Query: 212 PRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG--IP---INVEGKIA 262
           P    D     + T PA  R+ ++ELLA Q++L     + +      +P   +  E  + 
Sbjct: 264 PGAQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHDERRNRAAPAMPRRKLGDESALV 323

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            ++L+ +PFS T +Q+    +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG 
Sbjct: 324 ARLLKALPFSLTAAQQRVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAALAAAQAIDAGY 383

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGT
Sbjct: 384 QAALMAPTEILAEQHARKLRGWLEPLGVNVAWLAGSLKTKEKRAAIEAAALGTAQLVIGT 443

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPR 433
           HA+ QD++++ +L LVIVDEQHRFGV QRL L  KA           PH L+M+ATPIPR
Sbjct: 444 HAIIQDAVEFARLGLVIVDEQHRFGVAQRLALRAKAQGAADGASDFQPHQLMMSATPIPR 503

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL +T   D+D+S I E P GR PI T ++   R +EVI R++     G++ YW+CP IE
Sbjct: 504 TLAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTGRQVYWVCPLIE 563

Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIE
Sbjct: 564 ESETLQLQTAVETYETLVAALPELKVGLVHGRLAPAEKATVMDAFSRNEIQLLVATTVIE 623

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS  +  RL  ++
Sbjct: 624 VGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARARLQTMR 683

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            T DGF IA  DL+ R  GE LG +QSG      A  +    L+E AR+ A  +L Q PD
Sbjct: 684 ETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLQNDQHLIEPAREAAATLLDQYPD 743

Query: 673 L 673
           +
Sbjct: 744 V 744


>gi|170702358|ref|ZP_02893251.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria IOP40-10]
 gi|170132743|gb|EDT01178.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria IOP40-10]
          Length = 686

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 241/660 (36%), Positives = 365/660 (55%), Gaps = 25/660 (3%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I E+    I    G +  +     + RR   + + D  
Sbjct: 13  TRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFDNE-VAYRPRRQLVVKIQDDD 71

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157
           GE  +L F             G+++ V G ++     + MVHP      + D   P ++ 
Sbjct: 72  GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVLT 130

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            VY    G+S    +K I  A+ R P+   LP  IE+D L+    P++A+A  I+H+P  
Sbjct: 131 PVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIERDYLKPLGVPTLAQAVRILHHPGV 190

Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-----EGKIAQKI 265
             D     + + PA  R+ ++ELLA Q++L    ++ +      +          +  ++
Sbjct: 191 DSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRAATDADALTTRL 250

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT+VA +A   A++AG QA 
Sbjct: 251 YAALPFTLTGAQARVVDEIAHDLTLAHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQAA 310

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTHA+
Sbjct: 311 LMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAI 370

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLV 436
            QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL 
Sbjct: 371 IQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLA 430

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +T   D+++S I E P GR P+ T ++   R +EVI R++     G++ YW+CP IEE +
Sbjct: 431 MTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREAALTGRQVYWVCPLIEESE 490

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
               ++ VE + +L        + ++HGR+S  DK +VM++F     +LL+ATTVIEVG+
Sbjct: 491 TLQLQTAVETYETLATALPELKVGLVHGRLSPADKAAVMEAFTRNEVQLLVATTVIEVGV 550

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL  ++ T 
Sbjct: 551 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRETT 610

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           DGF IA  DL+ R  GE LG +QSG      A  E    L++ AR  A  ++   PD+ +
Sbjct: 611 DGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAAARLIAAYPDVVT 670


>gi|307728506|ref|YP_003905730.1| ATP-dependent DNA helicase RecG [Burkholderia sp. CCGE1003]
 gi|307583041|gb|ADN56439.1| ATP-dependent DNA helicase RecG [Burkholderia sp. CCGE1003]
          Length = 755

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 253/662 (38%), Positives = 375/662 (56%), Gaps = 29/662 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I  +    I    G +  +      +R+    L +D  
Sbjct: 82  TRDIDLVLHLPMRYEDETSLTPIGHLLPGGIAQTEGVVFDNEIAYRPRRQLLVKLRDDAG 141

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G ++ V G ++     + MVHP        D + PL +A
Sbjct: 142 DELVLRFLNFYGSQVKQMAI-GARLRVRGDVRGGFFGMEMVHPAV---RVVDEDTPLPQA 197

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  ALSR  LP +LPE + +  L+    PS+ +A   +H+P
Sbjct: 198 LTPVYPSTAGVSQAYLRKAIDNALSRTSLPELLPEAVARQWLEPLGVPSLMDAVRTLHHP 257

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG--IP---INVEGKIAQ 263
               D     + T PA  R+ ++ELLA Q++L    ++ +      +P   +  E  +  
Sbjct: 258 GAQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHEERRTRAAPAMPRRKLGDESALVA 317

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++L  +PFS T++QE    +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 318 RLLAALPFSLTRAQERVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAALAAAQAIDAGYQ 377

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTH
Sbjct: 378 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKEKRAAIEAAALGTAQLVIGTH 437

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRT
Sbjct: 438 AIIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKARNAADGARDFQPHQLMMSATPIPRT 497

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R +EVI R++     G++ YW+CP IEE
Sbjct: 498 LAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTGRQVYWVCPLIEE 557

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L       ++ ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 558 SETLQLQTAVETYETLVAALPELNVGLVHGRLAPAEKAAVMDAFTRNEVQLLVATTVIEV 617

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS  +  RL  ++ 
Sbjct: 618 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARARLQTMRE 677

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR+ A  +L Q P +
Sbjct: 678 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDQWLIEPAREAAAVLLEQYPHV 737

Query: 674 TS 675
            +
Sbjct: 738 VT 739


>gi|74316487|ref|YP_314227.1| ATP-dependent DNA helicase RecG [Thiobacillus denitrificans ATCC
           25259]
 gi|74055982|gb|AAZ96422.1| ATP-dependent DNA helicase RecG [Thiobacillus denitrificans ATCC
           25259]
          Length = 678

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 242/649 (37%), Positives = 360/649 (55%), Gaps = 25/649 (3%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           R  DL+ + P  + D      I E+   +   +   + + +    + RR   +++ D +G
Sbjct: 26  RDSDLILHLPLRWEDETRITPIGELLPGQTAQVQACVRE-AKVTYRPRRMLTLIVEDDSG 84

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---I 156
            + + F +     LK  F  G +    G+++     + MVHP +      D + PL   +
Sbjct: 85  VLGVRFLHFYPSHLK-AFQAGARFRFNGEVRGGFLGLEMVHPRF---AKADDDTPLPAGL 140

Query: 157 EAVYSLPTGLSVDLFKKIIVEALS-----RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
             VY    GL     +K+I  AL+      LP  PEW E+          +  +  ++H 
Sbjct: 141 TPVYPTTAGLGQASLRKLIERALAAPIDETLP--PEWREE-----LGLAELESSIRLLHQ 193

Query: 212 PRKA---KDFEWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           P         E  + PA +RLA+DELLA Q++L   R+  +    +P+    ++    + 
Sbjct: 194 PPPGCAQHALESRAHPAWQRLAFDELLAQQLSLATSRQAREARTTLPLPHRRRLTAAFVD 253

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + F  T +Q  A ++I  D++  + M R+LQGDVGSGKT+VA +A   AVE G QA  M
Sbjct: 254 TLAFELTAAQARAWQEISTDLAAPHPMRRLLQGDVGSGKTVVAALACLQAVENGMQAAFM 313

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  ILA+QHY  +        +    ++G+  +A R  A   IA G+A +  GTHALFQ
Sbjct: 314 APTEILAEQHYRKLAPTLAALGVRSGWVSGSQRRAEREAAWRAIAAGEADLAFGTHALFQ 373

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           ++  + +L LV+VDEQHRFGV QRL L  K T PH L+M+ATPIPRTL ++   D+D+S 
Sbjct: 374 EAGNFCRLGLVVVDEQHRFGVGQRLALMGKGTEPHQLMMSATPIPRTLAMSFFADLDVSA 433

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P GR PI T ++   R DEV+ R++     G +AYW+CP IEE ++   ++  + +
Sbjct: 434 IDELPPGRTPIVTKLVSAARRDEVLARVRDACVGGGQAYWVCPLIEESEKLQLQTAEDTY 493

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +L E      I ++HGR+   DK+SVM +F++    LL+ATTVIEVG+DV +A++++IE
Sbjct: 494 GTLVEQLPGLRIGLVHGRLKAEDKQSVMAAFQSHEIDLLVATTVIEVGVDVPNAALMVIE 553

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           +AE  GLAQLHQLRGRVGRG   S C+LLY  PLS+ +  RL V+    DGF IA +DL 
Sbjct: 554 HAERMGLAQLHQLRGRVGRGARESVCVLLYETPLSELARARLKVIFEHSDGFEIARQDLL 613

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            R  GE+LG +QSG+P    A  E   +LLE AR  A+  L + P++ +
Sbjct: 614 LRGPGELLGQRQSGLPMLRFADLERDVALLERARDLAQRCLRERPEVAA 662


>gi|328887724|emb|CAJ69448.2| ATP-dependent DNA helicase RecG [Clostridium difficile]
          Length = 686

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 242/636 (38%), Positives = 374/636 (58%), Gaps = 12/636 (1%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEI 101
           DLL+Y P  F DR+   KI+++ +   VTI   IS  ++F  ++     KI + D TG  
Sbjct: 32  DLLYYFPRQFEDRNNLKKIAQLEDGEKVTIKAVISSINTFSPKEGMTLTKIDVKDETGSA 91

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            L+FF +    +KN F  G  I V GK+KK  N + +      +  +   N      VY 
Sbjct: 92  KLVFFNK--SYIKNTFRPGDSILVFGKVKKKFNNLELTSCELEYLTNSPKNTCRFMPVYQ 149

Query: 162 LPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
           L  G++      II   L  +  ++ E++ + +++K    SI  A   IH+P   +  + 
Sbjct: 150 LTYGVTNKEIMSIIRTVLEDKELIIQEYMPQRIIEKYRLCSIDFAVRNIHSPSSKESLKI 209

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
              A  R+ ++ELL  Q+ L + +    KE GI      K  +KI+  +PF  TK+Q  A
Sbjct: 210 ---ALYRIVFEELLILQLGLFVFKSGRNKEDGIKFET-SKDLKKIISALPFKLTKAQNRA 265

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           + +I+QDM+ +  M R++QGDVGSGKT+VAL+A+A  V  G Q  +MAP  ILA QHY  
Sbjct: 266 LDEIIQDMNLEKIMNRLVQGDVGSGKTVVALLALANCVLNGYQGALMAPTEILAGQHYIS 325

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           + +  ++  I V ++ G++ +  +   LE+I + +  I+IGTHAL +D +++  + LVI 
Sbjct: 326 LTESLKDFGINVGLLIGSLTKKQKDTVLEQIKNNEIDILIGTHALIEDKVEFNNIGLVIT 385

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQHRFGV QR KL+ K   P +L+MTATPIPRTL L   GD+DIS I E P GR+PI+T
Sbjct: 386 DEQHRFGVMQRSKLSLKGANPDILVMTATPIPRTLALILYGDLDISIIDELPPGRQPIET 445

Query: 461 VIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-S 517
           + I  ++ D     L +  +  G++ Y +CP +EE +    +S VE    L  E+F    
Sbjct: 446 IAIEKSKRDRAYNNLVRREVESGRQVYIVCPLVEESEAIEAKSAVELVEELRAEYFHDLR 505

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + ++HG+M   +K+ VM  FK+    +L++T VIEVG++V +A+++IIENAE FGLAQLH
Sbjct: 506 LGLLHGKMKSSEKDEVMRLFKDKEIDILVSTIVIEVGVNVPNATLMIIENAERFGLAQLH 565

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG   S C+L+Y    +     R+++++ T DGF I+E+DL+ R  GE  G +
Sbjct: 566 QLRGRVGRGSHKSYCVLIYDSK-TDVCRQRMAIMEETNDGFKISEKDLEIRGPGEFFGTR 624

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           Q G+P+  +A    H  +L++A+++A++IL +D +L
Sbjct: 625 QHGLPELKVANLFKHIKILKLAQQEARYILGEDNNL 660


>gi|303230783|ref|ZP_07317530.1| ATP-dependent DNA helicase RecG [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514543|gb|EFL56538.1| ATP-dependent DNA helicase RecG [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 680

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 238/630 (37%), Positives = 362/630 (57%), Gaps = 23/630 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP----YKILLNDGT 98
           +LL Y P S+ DR    KI  I E       G +    S   ++ RP     ++++ DGT
Sbjct: 29  NLLAYFPRSYEDRR---KIYSIKELETGITAGVVGTVVSITEKRPRPRLSILEVIITDGT 85

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
           G + ++ F +  +  KN + +G+++   GK +     + M  P         +    I  
Sbjct: 86  GPMKIVLFNQGYK--KNFYKKGQRLYAYGKAEFQYGSMQMNSPQIENLGPDAMPDTGIVP 143

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           +Y L  G+S  + +  I         + E +  +++   +     +AF  +H P  ++  
Sbjct: 144 IYPLVDGVSQYVVRASIRNWFEAHHTMDEILPTEIMNYHASMKRYDAFKEMHFPSSSESH 203

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           E    AR +LAY+EL   Q  L L+R + +  +G  +  +G + ++   N+PF  T  QE
Sbjct: 204 E---KARYQLAYEELFIMQSGLALLRNKEQCYVGPKMEPDGTLMEQCRTNLPFQLTGDQE 260

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A+ +I QDM  +  M R+LQGDVGSGKT+VA +++  AVE G QAVIMAP  ILA QHY
Sbjct: 261 RAVTEISQDMQDERPMQRLLQGDVGSGKTVVATLSLVKAVENGYQAVIMAPTEILATQHY 320

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I ++ +   I + ++TG+ P+  + K  E +A+G   +IIGTHAL QD +Q+  L LV
Sbjct: 321 EGITEFCKTLPINIALLTGSTPKKEKDKIYEELANGTIQLIIGTHALIQDKVQFKNLGLV 380

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DEQHRFGV QR  L  K   PHVL+MTATPIPRT+ L+  GD+ +S I E P GRKP+
Sbjct: 381 IIDEQHRFGVNQRAALQHKGVYPHVLIMTATPIPRTMTLSVYGDLAVSLIKEMPPGRKPV 440

Query: 459 KTVIIPINRIDEVIERLKVV----LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           KT ++         ERL+V     ++ G + Y +CP +EE ++ + ++  E F  L ++F
Sbjct: 441 KTYVVD----SSYKERLRVFFGKEMAAGHQVYVVCPLVEESEKLDLQAAEELFLELKDYF 496

Query: 515 TSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
             S  + ++HGRM+  +K+ VM +F NG  +LL++TTVIEVG++V +A+I+ IE AE FG
Sbjct: 497 YKSFEVGLVHGRMNPKEKDEVMQAFHNGRIQLLVSTTVIEVGVNVPNATIMCIEGAERFG 556

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+QLHQLRGRVGRG+  + CIL+        S  RL ++++T+DGF +AE+DL  R  G+
Sbjct: 557 LSQLHQLRGRVGRGDIQAYCILVSDSK-GDVSQERLRLMESTQDGFELAEQDLLLRGSGQ 615

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           + G+ QSG+P   +A       +L  AR D
Sbjct: 616 LFGLAQSGLPDLRVANIIKDIDILVAARND 645


>gi|226198358|ref|ZP_03793927.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei Pakistan
           9]
 gi|225929541|gb|EEH25559.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei Pakistan
           9]
          Length = 903

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/662 (37%), Positives = 370/662 (55%), Gaps = 29/662 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 230 TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 289

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +A
Sbjct: 290 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 345

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+P
Sbjct: 346 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 405

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQ 263
               D     + T PA  R+ +DELLA Q++L    ++ +      +    +     ++ 
Sbjct: 406 GVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRARDDGAALSA 465

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            +   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 466 CLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 525

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTH
Sbjct: 526 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 585

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRT
Sbjct: 586 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 645

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE
Sbjct: 646 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 705

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 706 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 765

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ 
Sbjct: 766 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 825

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++
Sbjct: 826 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEV 885

Query: 674 TS 675
            +
Sbjct: 886 VA 887


>gi|210615605|ref|ZP_03290678.1| hypothetical protein CLONEX_02896 [Clostridium nexile DSM 1787]
 gi|210150209|gb|EEA81218.1| hypothetical protein CLONEX_02896 [Clostridium nexile DSM 1787]
          Length = 705

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 249/687 (36%), Positives = 395/687 (57%), Gaps = 24/687 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           + +S+ +G+G+K      K+      N     DLL + P  +        I+EI E R V
Sbjct: 24  STISSLKGIGEKTEKLFQKL------NIFTIGDLLRHFPKGYEVYEEATPIAEIDEGRTV 77

Query: 71  TITGYISQHSSFQLQKRRPYK---ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           T+TG I  +   Q+  R   +   I + D TG + +++F  +   L+N F +G  +T+ G
Sbjct: 78  TVTGAI--YGKVQVSGRTSMQVTTIYVKDITGTLRVVWF--RMPFLRNTFQKGGVVTLRG 133

Query: 128 KIKKLKNRIIMVHPHYIFHNSQ--DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           K+ + K  ++M  P  IF+ S+  +     ++  Y+L  GL+ +   K + +A+S L + 
Sbjct: 134 KVVRRKGTLLMEQPE-IFYPSELYEEKINTLQPNYALTAGLTNNAVVKAMKQAISYLDLK 192

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            +++  D+  +        A   IH P   ++F     ARERL ++E L   +AL  M++
Sbjct: 193 QDFLPPDVRTRYHLAEYNYAIQGIHFPVDKEEF---YTARERLVFEEFLVFILALRQMKE 249

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + +K          +  ++ +  +P+  T +Q+   ++I  D++  + M R++QGDVGSG
Sbjct: 250 KNEKSKNTFSFAIAEPVEQFMHKLPYELTGAQQKVWEEIKADLNGAHVMSRLVQGDVGSG 309

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAH 363
           KT++AL+ +  A   G Q  +MAP  +LA+QH+E I +  +  QI   VE +TG+M    
Sbjct: 310 KTIIALLGLLLAAVNGYQGALMAPTEVLAKQHFESICEMLEEHQIPVCVEFLTGSMTAKE 369

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R A ERIA G+A II+GTHAL Q+ ++Y+ L LV+ DEQHRFGV+QR KL +K   PH+
Sbjct: 370 KRMAYERIASGEAQIIVGTHALIQEKVKYHSLALVVTDEQHRFGVKQREKLAEKGNTPHI 429

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++  N      + +K  + EG+
Sbjct: 430 LVMSATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVDTNYRKTAYQFMKKQVLEGR 489

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGT 541
           + Y ICP IEE +     +V++   +L E    +I  A +HG+M   +K+ +M+ F    
Sbjct: 490 QCYVICPMIEENENLEAENVIDYAKTLQEEMGDNIQVAYLHGKMKQSEKDVIMEQFGKRE 549

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVGI+V +A+++++ENAE FGLAQLHQLRGRVGRG+  S CI +     S
Sbjct: 550 IQILVSTTVIEVGINVPNATVMMVENAERFGLAQLHQLRGRVGRGKYQSYCIFM-SASKS 608

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           K +  RLS+L  + DGF IA EDLK R  G++ GI+QSG+  F +        +L+ A +
Sbjct: 609 KETKERLSILNKSNDGFFIASEDLKLRGPGDLFGIRQSGILDFKLGDVFQDAKILQRASE 668

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLY 688
            A+ ++++D +L     Q+IR  L  Y
Sbjct: 669 AAEQLISEDENLEKQNHQNIREYLQKY 695


>gi|78065288|ref|YP_368057.1| ATP-dependent DNA helicase RecG [Burkholderia sp. 383]
 gi|77966033|gb|ABB07413.1| ATP-dependent DNA helicase RecG [Burkholderia sp. 383]
          Length = 777

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 240/661 (36%), Positives = 368/661 (55%), Gaps = 27/661 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I E+    I    G +  +     + RR   + + D  
Sbjct: 104 TRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQAEGVVFDNE-VAYRPRRQLVVKIQDDD 162

Query: 99  GE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LI 156
           GE + L F       +K +   G+++ V G ++     + MVHP      + D   P ++
Sbjct: 163 GEHLVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVL 220

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
             VY    G+S    +K I  A+ R P+   LP  I++D L+    P++ +A  I+H+PR
Sbjct: 221 TPVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIQRDYLKPLDVPTLEQAVRILHHPR 280

Query: 214 KAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-----NVEGKIAQK 264
              D     + + PA  R+ ++ELLA Q++L    ++ +      +          +  +
Sbjct: 281 VDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRTATDADSLTTR 340

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +   +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT+VA +A   A++AG QA
Sbjct: 341 LYGALPFTLTGAQARVVDEIANDLTLAHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQA 400

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTHA
Sbjct: 401 ALMAPTEILAEQHARKLRAWLEPLGVTVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHA 460

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTL 435
           + QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL
Sbjct: 461 IIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTL 520

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +T   D+++S I E P GR P+ T ++   R +EVI R++     G++ YW+CP IEE 
Sbjct: 521 AMTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREAALTGRQVYWVCPLIEES 580

Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           +    ++ VE + +L        + ++HGR+S  DK +VM++F     +LL+ATTVIEVG
Sbjct: 581 ETLQLQTAVETYETLATALPELKVGLVHGRLSPADKAAVMEAFTRNDVQLLVATTVIEVG 640

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL  ++ T
Sbjct: 641 VDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRET 700

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            DGF IA  DL+ R  GE LG +QSG      A  E    L++ AR  A  ++   P++ 
Sbjct: 701 TDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAATRLIAAYPEIV 760

Query: 675 S 675
           +
Sbjct: 761 T 761


>gi|317500351|ref|ZP_07958576.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089640|ref|ZP_08338539.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898292|gb|EFV20338.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405008|gb|EGG84546.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 685

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/673 (36%), Positives = 383/673 (56%), Gaps = 30/673 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S+ +G+G+K      KI            DL+ Y+P  F        + E+ E ++ T+
Sbjct: 6   ISSLKGIGEKTEKLFQKI------GVDTVEDLIRYYPKGFEIFEDPISVGEVEEGKVCTV 59

Query: 73  TGYI------SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            G +      S +S  Q+       + L D TG + ++++  +   L+N   +G  + + 
Sbjct: 60  AGMVFGRIQVSTNSKMQITT-----LHLKDVTGTLKVIWY--RMPFLRNTLAKGGTLVLR 112

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           G+I + KN I+M HP   + +S+ +     ++ VYSL  GL+ +   K + +ALS L   
Sbjct: 113 GRIVRKKNEIVMEHPEIFYPSSKYEEKRDTMQPVYSLTAGLTNNSVIKAVKQALSFLDDE 172

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            + + ++L  K SFP   EA   +H PR+ +DF     AR+R  ++E L   ++L  M++
Sbjct: 173 QDILPEELRLKYSFPKYEEAIYAMHFPREKEDF---VRARKRFVFEEFLLFILSLRRMKE 229

Query: 246 QFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              +    P +   +   ++ L  +P+  T +QE    +I  DM  +N M R++QGDVGS
Sbjct: 230 SENRSEN-PFHFADRPEIEQFLGALPYHLTNAQEKVWTEIKSDMQSENVMSRLVQGDVGS 288

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV--EIITGNMPQA 362
           GKT++A +A+  +   G Q  +MAP  +LA QHYE I +  +  +I +  E++TG+M  +
Sbjct: 289 GKTIIAFLALLLSALNGYQGALMAPTEVLAVQHYENISEMLEKYKIPLQAELLTGSMTMS 348

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            ++KA  RI  G+A IIIGTHAL Q+ + Y  L LV+ DEQHRFGV+QR  L QK   PH
Sbjct: 349 QKKKAYARIESGEAAIIIGTHALIQEKVLYRNLALVVTDEQHRFGVRQRETLAQKGKTPH 408

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+M+ATPIPRTL +   GD+DIS I E P  R PIK  ++     ++    ++  + EG
Sbjct: 409 ILVMSATPIPRTLAIILYGDLDISIINEMPKNRLPIKNCVVNTEYREKAYRFMRKQVLEG 468

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNG 540
           ++ Y ICP +EE +  +  +V++    L E     I +  +HG+M   +K+ +M +F   
Sbjct: 469 RQCYVICPMVEESESLDAENVIDYSQMLAEELGDGIHVGCLHGKMKQKEKDEIMSAFGKN 528

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L++TTV+EVGIDV +A++++IENAE FGLAQLHQLRGRVGRG   S CI +     
Sbjct: 529 EIQILVSTTVVEVGIDVPNATVMLIENAERFGLAQLHQLRGRVGRGGYQSYCIFM-SASK 587

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S  +  RL +L  + DGF IA EDL+ R  G++ GI+QSG+  F IA       +L+IA 
Sbjct: 588 SDETKERLEILNRSNDGFFIAGEDLRLRGPGDLFGIRQSGILDFKIADVFQDAEVLKIAG 647

Query: 661 KDAKHILTQDPDL 673
           ++A  IL +DP+L
Sbjct: 648 EEANKILKRDPEL 660


>gi|21244116|ref|NP_643698.1| ATP-dependent DNA helicase RecG [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21109744|gb|AAM38234.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 717

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 255/708 (36%), Positives = 386/708 (54%), Gaps = 52/708 (7%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           PS      A LS+  GVG K +  F ++ I           DL  + P  + DR     I
Sbjct: 9   PSLAVAGQARLSSLPGVGPKVADRFAARGILS-------VQDLWLHLPLRYEDRTRLTTI 61

Query: 62  SEISEERIVTITGYISQ-HSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118
           +++       I G +      F+    RP  ++ ++D + G + L FF+ +   +   F 
Sbjct: 62  AQLQGGVPAQIEGRVDAVERGFRF---RPVLRVAVSDASYGTLVLRFFHFRAAQVAQ-FA 117

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176
            G ++ V G  K  ++   +VHP Y +    +D      ++ VY +  G+     +K+I 
Sbjct: 118 VGTRVRVFGTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177

Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225
           +AL RLP       + P W     LQ +  PS+  A   +H P    D         PA+
Sbjct: 178 QALERLPPESALELLPPHW-----LQDERLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQ 232

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +RLA +ELLA Q++L   R   ++     +   G + Q++ + +PF  T +Q+   + I 
Sbjct: 233 QRLAIEELLAHQLSLRRQRIALQRLHAPSLPGNGTLVQQLRKALPFQLTGAQQRVFEQIA 292

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D++Q + MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + 
Sbjct: 293 HDLAQPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLTNLRGWL 352

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +   I +  + G +    R  A+  +A GQA +++GTHAL Q+++ ++ L L I+DEQHR
Sbjct: 353 EPLGIRIVWLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHR 412

Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           FGV QRL L  K  A    PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+
Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSAYADLDVSAIDELPPGRTPVQTI 472

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--------------NFRSVVERF 507
           ++   R  E++ER++   +EG++AYW+C  IEE +E                 ++    F
Sbjct: 473 VLSAERRPELVERIRAACAEGRQAYWVCTLIEESEEPGKGAQGQQGGPPRIEAQAAEVTF 532

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +L        +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIE
Sbjct: 533 ETLSAQLPGVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIE 592

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           NAE  GLAQLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+
Sbjct: 593 NAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLQ 652

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            R  GE+LG +Q+G+  F IA       LL   +  A+ +L + PD+ 
Sbjct: 653 LRGPGELLGTRQTGLASFRIADLARDAGLLPRVQLLAERLLDEAPDIA 700


>gi|107021800|ref|YP_620127.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia AU 1054]
 gi|116688747|ref|YP_834370.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia HI2424]
 gi|105891989|gb|ABF75154.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia AU 1054]
 gi|116646836|gb|ABK07477.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia HI2424]
          Length = 771

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 239/660 (36%), Positives = 366/660 (55%), Gaps = 25/660 (3%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I E+    I    G +  +     + RR   + + D  
Sbjct: 98  TRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFDNE-VAYRPRRQLVVKIQDDD 156

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157
           GE  +L F             G+++ V G ++     + MVHP      + D   P ++ 
Sbjct: 157 GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVLT 215

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            VY    G+S    +K I  A+ R P+   LP  I++D L+    P++ +A  I+H+PR 
Sbjct: 216 PVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIQRDYLKPLDVPTLEQAVRILHHPRV 275

Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE-----GKIAQKI 265
             D     + + PA  R+ ++ELLA Q++L    ++ +      +          +  ++
Sbjct: 276 DSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRAATDTDALTTRL 335

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT+VA +A   A++AG QA 
Sbjct: 336 YAALPFTLTGAQARVVDEIAHDLTLAHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQAA 395

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTHA+
Sbjct: 396 LMAPTEILAEQHARKLRAWLEPLGVTVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAI 455

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLV 436
            QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL 
Sbjct: 456 IQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLA 515

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +T   D+++S I E P GR P+ T ++   R +EVI R++     G++ YW+CP IEE +
Sbjct: 516 MTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREAALTGRQVYWVCPLIEESE 575

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
               ++ VE + +L        + ++HGR+S  DK +VM++F     +LL+ATTVIEVG+
Sbjct: 576 TLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMEAFTRNEVQLLVATTVIEVGV 635

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL  ++ T 
Sbjct: 636 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRETT 695

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           DGF IA  DL+ R  GE LG +QSG      A  E    L++ AR+ A  ++   P++ +
Sbjct: 696 DGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPAREAAARLIAAYPEVVT 755


>gi|71066639|ref|YP_265366.1| ATP-dependent DNA helicase RecG [Psychrobacter arcticus 273-4]
 gi|71039624|gb|AAZ19932.1| probable DNA helicase [Psychrobacter arcticus 273-4]
          Length = 808

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/485 (44%), Positives = 302/485 (62%), Gaps = 15/485 (3%)

Query: 201 SIAEAFNIIHNPRKAKDF-----------EWTSPARERLAYDELLAGQIALLLMRKQFKK 249
           +I EA  ++H P    D              T  A +RL  +EL A Q++LL  R+Q  K
Sbjct: 302 TIFEALVLLHTPPTYTDTGRQYQLLTQLSARTHAACQRLIIEELTAHQLSLLYRRQQLHK 361

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                  V+  +A K+   +PF  T +Q+  ++DI  DM+    MLR++QGDVG+GKTLV
Sbjct: 362 HKAPKCAVQSPLADKLFGALPFDLTGAQKRVMQDITADMATSIPMLRLVQGDVGAGKTLV 421

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A  A   A+++G Q  +MAP  ILA+QH    K + +   I V  + G      RR+ALE
Sbjct: 422 AAGAAGYALDSGWQVAVMAPTEILAEQHLVNFKNWFEPLGIGVGWLAGKQTAKQRREALE 481

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLM 426
            ++     I++GTHALFQ+ +++ KL LVI+DEQHRFGV+QR+ LT K  A   PH L+M
Sbjct: 482 AVSENTVQIVVGTHALFQEQVKFAKLGLVIIDEQHRFGVEQRMALTNKGVAGSTPHQLIM 541

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL ++  GD+D S I E P GR PI TV I  NR ++VIER+ V    G++AY
Sbjct: 542 TATPIPRTLAMSVYGDMDTSIIDELPPGRTPITTVTIDRNRRNDVIERIAVNCEAGRQAY 601

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           W+C  +EE    + ++    +  L E     I ++HG+M   DK+++M +FK G   LLI
Sbjct: 602 WVCSLVEESSVLDAQAAEATYEDLSERLDIRIGLVHGKMKGADKQAIMQAFKAGQLDLLI 661

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG+DV +AS+++IENAE  GL+QLHQLRGRVGRG   S C+LLY  PLS+    
Sbjct: 662 ATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRVGRGSTKSYCVLLYQKPLSETGTE 721

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL+VL+++ DGF+IA++DL+ R  GE+LG +Q+G   + +A     + L  IA++ AKH+
Sbjct: 722 RLNVLRDSTDGFVIAQKDLELRGPGELLGKRQTGNVGYYLADLIRDEQLFAIAQRLAKHL 781

Query: 667 LTQDP 671
           +  DP
Sbjct: 782 IA-DP 785



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 20/173 (11%)

Query: 12  PLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           P++   GVG K    L+++ IN       R  DLL + P  + DR     I ++   +  
Sbjct: 36  PVTALAGVGPKVVEQLTQLGIN-------RIFDLLLHLPRDYEDRSRLVSIGDVGHGQAA 88

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF--YRKTEMLKNVFFEGRKITVTGK 128
            ITG +    +     R    ++++D TG I+L FF  YR    L      G  + + G+
Sbjct: 89  LITGRVVHVDT----NRSGMTVIVDDDTGTISLRFFKVYRG---LAQTMSVGTHLQLFGE 141

Query: 129 IKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           +K  +    + HP Y  I  N   VN  L E +Y    GL  +  + +I  AL
Sbjct: 142 VKVSRYGKQIHHPEYQIISSNEAIVNTGL-EPIYPSVKGLHQNKLRTLIKLAL 193


>gi|153814834|ref|ZP_01967502.1| hypothetical protein RUMTOR_01049 [Ruminococcus torques ATCC 27756]
 gi|145847865|gb|EDK24783.1| hypothetical protein RUMTOR_01049 [Ruminococcus torques ATCC 27756]
          Length = 687

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 244/673 (36%), Positives = 383/673 (56%), Gaps = 30/673 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S+ +G+G+K      KI            DL+ Y+P  F        + E+ E ++ T+
Sbjct: 8   ISSLKGIGEKTEKLFQKI------GVDTVEDLIRYYPKGFEIFEDPISVGEVEEGKVCTV 61

Query: 73  TGYI------SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            G +      S +S  Q+       + L D TG + ++++  +   L+N   +G  + + 
Sbjct: 62  AGMVFGRIQVSTNSKMQITT-----LHLKDVTGTLKVIWY--RMPFLRNTLAKGGTLVLR 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           G+I + KN I+M HP   + +S+ +     ++ VYSL  GL+ +   K + +ALS L   
Sbjct: 115 GRIVRKKNEIVMEHPEIFYPSSKYEEKRDTMQPVYSLTAGLTNNSVIKAVKQALSFLDDE 174

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            + + ++L  K SFP   EA   +H PR+ +DF     AR+R  ++E L   ++L  M++
Sbjct: 175 QDILPEELRLKYSFPKYEEAIYAMHFPREKEDF---VRARKRFVFEEFLLFILSLRRMKE 231

Query: 246 QFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              +    P +   +   ++ L  +P+  T +QE    +I  DM  +N M R++QGDVGS
Sbjct: 232 SENRSEN-PFHFADRPEIEQFLGALPYHLTNAQEKVWTEIKSDMQSENVMSRLVQGDVGS 290

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV--EIITGNMPQA 362
           GKT++A +A+  +   G Q  +MAP  +LA QHYE I +  +  +I +  E++TG+M  +
Sbjct: 291 GKTIIAFLALLLSALNGYQGALMAPTEVLAVQHYENISEMLEKYKIPLQAELLTGSMTMS 350

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            ++KA  RI  G+A IIIGTHAL Q+ + Y  L LV+ DEQHRFGV+QR  L QK   PH
Sbjct: 351 QKKKAYARIESGEAAIIIGTHALIQEKVLYRNLALVVTDEQHRFGVRQRETLAQKGKTPH 410

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+M+ATPIPRTL +   GD+DIS I E P  R PIK  ++     ++    ++  + EG
Sbjct: 411 ILVMSATPIPRTLAIILYGDLDISIINEMPKNRLPIKNCVVNTEYREKAYRFMRKQVLEG 470

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNG 540
           ++ Y ICP +EE +  +  +V++    L E     I +  +HG+M   +K+ +M +F   
Sbjct: 471 RQCYVICPMVEESESLDAENVIDYSQMLAEELGDGIHVGCLHGKMKQKEKDEIMSAFGKN 530

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L++TTV+EVGIDV +A++++IENAE FGLAQLHQLRGRVGRG   S CI +     
Sbjct: 531 EIQILVSTTVVEVGIDVPNATVMLIENAERFGLAQLHQLRGRVGRGGYQSYCIFM-SASK 589

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S  +  RL +L  + DGF IA EDL+ R  G++ GI+QSG+  F IA       +L+IA 
Sbjct: 590 SDETKERLEILNRSNDGFFIAGEDLRLRGPGDLFGIRQSGILDFKIADVFQDAEVLKIAG 649

Query: 661 KDAKHILTQDPDL 673
           ++A  IL +DP+L
Sbjct: 650 EEANKILKRDPEL 662


>gi|323524791|ref|YP_004226944.1| ATP-dependent DNA helicase RecG [Burkholderia sp. CCGE1001]
 gi|323381793|gb|ADX53884.1| ATP-dependent DNA helicase RecG [Burkholderia sp. CCGE1001]
          Length = 731

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 244/627 (38%), Positives = 360/627 (57%), Gaps = 29/627 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I  +    I    G +  +      +R+    L +D  
Sbjct: 58  TRDIDLVLHLPMRYEDETSLTPIGHLLPGGIAQTEGVVFDNEIAYRPRRQLLVKLRDDAG 117

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G ++ V G ++     + MVHP        D + PL +A
Sbjct: 118 DELVLRFLNFYGSQVKQMAI-GARLRVRGDVRGGFFGMEMVHPAV---RVVDEDTPLPQA 173

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G++    +K I  ALSR  LP +LPE + ++ LQ    PS+ +A   +H+P
Sbjct: 174 LTPVYPSTAGVTQAYLRKAIDNALSRTSLPELLPEAVAREWLQPLGVPSLMDAVRTLHHP 233

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG--IP---INVEGKIAQ 263
               D     + T PA  R+ ++ELLA Q++L    ++ +      +P   +  E  +  
Sbjct: 234 GAQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHEERRTRAAPAMPRRKLGDEAALVA 293

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++L+ +PFS TK+QE    +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 294 RLLKALPFSLTKAQERVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAALAAAQAIDAGYQ 353

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTH
Sbjct: 354 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTH 413

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV QRL L  KA           PH L+M+ATPIPRT
Sbjct: 414 AIIQDTVEFARLGLVIVDEQHRFGVAQRLALRAKALNAADGARDFQPHQLMMSATPIPRT 473

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R +EVI R++     G++ YW+CP IEE
Sbjct: 474 LAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTGRQVYWVCPLIEE 533

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 534 SETLQLQTAVETYETLVAALPELKVGLVHGRLAPAEKAAVMDAFTRNEVQLLVATTVIEV 593

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS  +  RL  ++ 
Sbjct: 594 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARARLQTMRE 653

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSG 640
           T DGF IA  DL+ R  GE LG +QSG
Sbjct: 654 TTDGFEIARRDLEIRGPGEFLGARQSG 680


>gi|254431018|ref|ZP_05044721.1| ATP-dependent DNA helicase RecG [Cyanobium sp. PCC 7001]
 gi|197625471|gb|EDY38030.1| ATP-dependent DNA helicase RecG [Cyanobium sp. PCC 7001]
          Length = 807

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 247/687 (35%), Positives = 382/687 (55%), Gaps = 38/687 (5%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFI--DLLFYHPSSFIDRHYRPKISEISEER 68
           APL T RGVG + +  L+++          F+  DL+ Y+P  ++D  +R +I+ +   R
Sbjct: 111 APLGTIRGVGPRTAARLAQL--------GLFVVRDLVHYYPRDYLDYAHRVRIAGLEVGR 162

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFE------ 119
             TI   + +  +F   +     IL   L+D TG + +  F+         + +      
Sbjct: 163 TATIVATVRRCQAFTSPRNPNLGILELQLSDPTGRLRVSRFFAGRRFASPAWLKAQQRQY 222

Query: 120 --GRKITVTGKIKKLKNRIIMVHP--HYIFHNSQDVNFPLIE---AVYSLPTGLSVDLFK 172
             G  + V+G +K+         P    +      V  P+I     VY L  GL  D  +
Sbjct: 223 PPGASVAVSGLVKETPYGPAFQDPLIEVLESPQATVRSPVIGRLLPVYGLTEGLGADRLR 282

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           + I   L ++    + + + L         AEA   IH P    D E     R RL +DE
Sbjct: 283 QAIAAVLPQVRQWDDPLPQALRHAHGLVGRAEALEQIHAP---ADQEQLQAGRHRLVFDE 339

Query: 233 LLAGQIALLLMRKQFKKEIGIPIN--VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            L  Q+ LL  R++  +    P+   V   +  + L  +PF  T +Q+  I +I  D+++
Sbjct: 340 FLLLQLGLLQRRRELTRSPSPPLQSPVHDSLMARFLELLPFQLTPAQQRVIAEIRADLAR 399

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           +  M R++QGDVGSGKT+VA+ A+  A++AG Q  +MAP  +LA+QHY+ +  +     +
Sbjct: 400 EQPMARLVQGDVGSGKTVVAIAALLTAIDAGCQGALMAPTEVLAEQHYQKLCAWLPQLHV 459

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              ++TG+ P   RR+ LE +A+GQ  +++GTHAL +D + + +L LV+VDEQHRFGV Q
Sbjct: 460 SCALLTGSTPARRRRRLLEDLANGQLQMLVGTHALLEDPVAFARLGLVVVDEQHRFGVAQ 519

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           R +L  K   PH+L MTATPIPRTL L+  GD+D+S+I   P GR PI+T ++     DE
Sbjct: 520 RDRLLAKGLQPHLLTMTATPIPRTLALSVHGDLDVSQIDGLPPGRTPIQTRLLRAGERDE 579

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDI 528
             + ++  +S G++AY + P +EE ++ + RS VE    L E       + ++HGRM+  
Sbjct: 580 AYQLIRKEVSRGQRAYVVLPLVEESEKLDLRSAVEVHQQLSEAIFPDLCVGLLHGRMASA 639

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           DK++ + +F  G  ++L++TTV+EVG+DV +AS++++E+AE FGLAQLHQLRGRVGRG  
Sbjct: 640 DKQAALAAFAAGESQVLVSTTVVEVGVDVPEASVMVVEHAERFGLAQLHQLRGRVGRGAA 699

Query: 589 ISSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            S C+L+ H   S+N+    RL VL  + DGF IAE DL+ R  G++LG +QSG+P   +
Sbjct: 700 ASHCLLVNH---SRNALARQRLDVLVRSSDGFEIAEMDLRLRGPGQVLGTRQSGLPDLAL 756

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDL 673
           A      S+LE AR  A+ IL  DP+L
Sbjct: 757 ASLTDDGSVLEQARAVAQEILAADPEL 783


>gi|167037717|ref|YP_001665295.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116132|ref|YP_004186291.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856551|gb|ABY94959.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929223|gb|ADV79908.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 681

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 255/675 (37%), Positives = 392/675 (58%), Gaps = 24/675 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           PL   +   +GVG K +  L K+ IN          DLLFY P  + +R    KI ++  
Sbjct: 2   PLNLDIQYVKGVGPKRAKLLKKLGINTVE-------DLLFYFPKDYENRSDILKIEDLKV 54

Query: 67  ERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               T  GYI+      +  K    K+ + DGTG + L+++      +KN F  G +  +
Sbjct: 55  GEKQTFRGYIAGSPREIKTSKVIITKVPVKDGTGAVELVWY--NQPYIKNNFKIGEEYII 112

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182
            GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   +
Sbjct: 113 NGKLQFKYGQLIVENP--VLEKSEDFKLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 170

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E+ +++ L +K    I  A   I+ P+      +   A+ R  Y EL   Q+AL L
Sbjct: 171 QEVEEFFDEEFLSEKGLMDIKNALININFPQNEA---YLEQAKYRFKYQELFLLQMALFL 227

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M++  K++ GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++QGDV
Sbjct: 228 MKRSVKEKKGIKF--EQADLKPFLMGLPFKLTLAQIKVLKEIIADMNSHKVMNRLVQGDV 285

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  +
Sbjct: 286 GSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPS 345

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
           ++++ LE+I +G   I++GTHAL +D++ +  L L I DEQHRFGV+QR  LTQK   P 
Sbjct: 346 NKKEVLEKIKNGDYDIVVGTHALIEDNVIFNNLGLCITDEQHRFGVRQRALLTQKGENPD 405

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRT  L   GD+DIS I + P GRK +KT +I  +  ++  E     + +G
Sbjct: 406 VLVMTATPIPRTFALILYGDLDISIIDQLPPGRKKVKTYVISSSVREKAYEFAMKEVKKG 465

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNG 540
           ++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F NG
Sbjct: 466 RQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMADSDKEKVMEEFVNG 525

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG++V +A+++I+ENAE FGLAQLHQLRGRVGR E  S CIL+ +   
Sbjct: 526 KIDILVSTTVIEVGVNVPNATVMIVENAERFGLAQLHQLRGRVGRSEFQSYCILISYSN- 584

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S  +  RL VL  T DGF IAE+DL+ R  GE LG++Q G+P+F IA       +L+  +
Sbjct: 585 SDIAKKRLGVLAQTSDGFKIAEKDLEIRGPGEFLGLRQHGLPEFKIANIFEDIDVLKRVQ 644

Query: 661 KDAKHILTQDPDLTS 675
           KD + +L +DP L +
Sbjct: 645 KDVEELLEKDPKLEN 659


>gi|172059700|ref|YP_001807352.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria MC40-6]
 gi|171992217|gb|ACB63136.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria MC40-6]
          Length = 792

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 241/660 (36%), Positives = 365/660 (55%), Gaps = 25/660 (3%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I E+    I    G +  +     + RR   + + D  
Sbjct: 119 TRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFDNE-VAYRPRRQLVVKIQDDD 177

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157
           GE  +L F             G+++ V G ++     + MVHP      + D   P ++ 
Sbjct: 178 GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVLT 236

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            VY    G+S    +K I  A+ R P+   LP  IE+D L+    P++A+A  I+H+P  
Sbjct: 237 PVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIERDYLKPLGVPTLAQAVRILHHPGV 296

Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-----EGKIAQKI 265
             D     + + PA  R+ ++ELLA Q++L    ++ +      +          +  ++
Sbjct: 297 DSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRAATDADALTTRL 356

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT+VA +A   A++AG QA 
Sbjct: 357 YAALPFTLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQAA 416

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTHA+
Sbjct: 417 LMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAI 476

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLV 436
            QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL 
Sbjct: 477 IQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLA 536

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +T   D+++S I E P GR P+ T ++   R +EVI R++     G++ YW+CP IEE +
Sbjct: 537 MTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREAALTGRQVYWVCPLIEESE 596

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
               ++ VE + +L        + ++HGR+S  DK +VM++F     +LL+ATTVIEVG+
Sbjct: 597 TLQLQTAVETYETLAAALPELKVGLVHGRLSPGDKAAVMEAFTRNEVQLLVATTVIEVGV 656

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL  ++ T 
Sbjct: 657 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRETT 716

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           DGF IA  DL+ R  GE LG +QSG      A  E    L++ AR  A  ++   PD+ +
Sbjct: 717 DGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAAARLIAAYPDVVT 776


>gi|299536784|ref|ZP_07050092.1| ATP-dependent DNA helicase RecG [Lysinibacillus fusiformis ZC1]
 gi|298727796|gb|EFI68363.1| ATP-dependent DNA helicase RecG [Lysinibacillus fusiformis ZC1]
          Length = 681

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 262/686 (38%), Positives = 383/686 (55%), Gaps = 34/686 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L+ P++  +GVGK+ +  L  + IN          DLL+  P    D   +      
Sbjct: 1   MTELYGPVNELKGVGKETAAHLESLGINT-------IADLLWTFPHRHEDFRLKDLAQTP 53

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRK 122
             ER VT+   + +  +     R   ++ +    G   + ++FF +    LK     G  
Sbjct: 54  HNER-VTVECKVEREPTILFLGRNKSRLQVTVLAGRHLVKVVFFNQG--YLKQKLVPGSI 110

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           ITVTGK  +   R ++      F    D V+F   E VYSL   +    F+K + + L  
Sbjct: 111 ITVTGKWDR--GRQVINGTAVTFGPKTDQVDF---EPVYSLKGLIPQKRFRKYMRQVLDD 165

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
              VLPE I   L +     SI E    IH P    D E    AR R AY+ELL  Q+ +
Sbjct: 166 CGEVLPETIPYYLQESYKLVSIREGLEGIHFPL---DAEHAKQARRRFAYEELLNFQLRI 222

Query: 241 LLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             +RK  K  E G  I       +  + ++P+  T +Q+  + +I +D+ + +RM R+LQ
Sbjct: 223 QALRKIRKDSEHGTVIQFNVHKLRDFIASLPYELTNAQKRVVNEICKDLKEPHRMNRLLQ 282

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA I + AAV AG Q  +MAP  ILA+QH E +K++ Q   + V +++G+ 
Sbjct: 283 GDVGSGKTVVAAIGLYAAVTAGFQGALMAPTEILAEQHLENLKEWFQPFGVRVALLSGST 342

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR  L  +A+G   I+IGTHAL Q  + ++KL  VI DEQHRFGV+QR  L  K  
Sbjct: 343 KTKERRAILADLANGDLDIVIGTHALIQPDVIFHKLGFVITDEQHRFGVEQRRILRDKGE 402

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T  +   +   V+ +L++ L
Sbjct: 403 NPDVLFMTATPIPRTLAITAFGEMDVSMIDEMPAGRKQIETHWMKKEQFGSVLSKLELEL 462

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSF 537
           + G++AY ICP IEE  + + ++ VE +  L  +F     + ++HGR+S  +K++VM +F
Sbjct: 463 AAGRQAYAICPLIEESDKLDVQNAVEIYEQLATYFKDRYHVGLMHGRLSADEKDAVMRAF 522

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             GT ++L++TTV+EVG++V +A+ +++ +AE FGLAQLHQLRGRVGRGE  S CILL  
Sbjct: 523 SEGTIQVLVSTTVVEVGVNVPNATFMLVYDAERFGLAQLHQLRGRVGRGEHQSYCILLAD 582

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLL 656
           P  S     R+  +  T DGF +AE+DL+ R  G+  G KQSG+P F +A   +HD  +L
Sbjct: 583 PK-SDEGKERMQSMTETNDGFRLAEKDLELRGPGDFFGRKQSGLPDFKVADL-VHDYRIL 640

Query: 657 EIARKDAKHILT-----QDPDLTSVR 677
           E ARKDA  +L      QD D   +R
Sbjct: 641 ETARKDASEMLETKAFWQDDDYQYLR 666


>gi|119487921|ref|ZP_01621418.1| ATP-dependent DNA helicase RecG [Lyngbya sp. PCC 8106]
 gi|119455497|gb|EAW36635.1| ATP-dependent DNA helicase RecG [Lyngbya sp. PCC 8106]
          Length = 833

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 237/673 (35%), Positives = 384/673 (57%), Gaps = 29/673 (4%)

Query: 27  LSKIINCGNANETRFI------DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
           L+K++   NA+    +      DLL+Y+P   ID   +  I ++     VT+   + + +
Sbjct: 142 LAKVVGPRNADRLAKLGLYTVYDLLYYYPRDHIDYARQVAIRDLVPGETVTLVAKVKRCN 201

Query: 81  SFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVFFEGRKITVTGKI 129
            F   + +   IL   L D TG + +  F+              K  + +G  I  +G +
Sbjct: 202 CFSSPRNKKLTILDLTLTDNTGNLKISRFFAGPRFSNAGWQNKQKYNYPQGTIIAASGLV 261

Query: 130 KKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           K  K  I + +P     +        +    +  VY L  G+  DL +K ++  L     
Sbjct: 262 KSNKYGITLDNPELEVLDQAGGQIDSMKIGRVVPVYPLSEGVGADLVRKAVLSVLPTTSQ 321

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L + + + LL       + +A   IH P    D +  + AR RL +DE    Q+ LL  R
Sbjct: 322 LQDSLPQGLLDLYQLIGVQDAIQNIHFP---PDRDCLAAARRRLVFDEFFYLQLGLLQQR 378

Query: 245 KQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +  KK     +    GK+ Q+    +PF  T +Q+  IK+IL D+     M R++QGDVG
Sbjct: 379 QSQKKATTSAVLAPTGKLIQQFDEILPFEFTNAQQRVIKEILIDLQSSEPMNRLVQGDVG 438

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT++A++AM AA++AG QA +MAP  +LA+QHY  +  +     + VE++TG+   A 
Sbjct: 439 AGKTVLAVVAMLAAIQAGYQAALMAPTEVLAEQHYRKLVSWFNLMHLSVELLTGSTKAAK 498

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+  +++  G+  +++GTHAL QD++++++L LV++DEQHRFGVQQR +L QK  +PHV
Sbjct: 499 RRQIHKQLETGELPVLVGTHALIQDTVKFHRLGLVVIDEQHRFGVQQRARLQQKGESPHV 558

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL LT  GD+D+S++ E P GR+PI+T I+   +  E  + ++  + +G+
Sbjct: 559 LTMTATPIPRTLALTLHGDLDVSQLDELPPGRQPIQTTILMGKQRKEAYDLMRREIVQGR 618

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y + P +EE ++ + RS VE    L         I ++HGR+S  +K+  +  F++  
Sbjct: 619 QVYVVLPLVEESEKLDVRSAVEEHQKLQTKIFPEFQIGLLHGRLSSAEKDEAISQFRDQK 678

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG+DV +A++++IENAE FGL+QLHQLRGRVGRGE  S C+L+     +
Sbjct: 679 TQILVSTTVVEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGEHKSFCLLMAGSS-T 737

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
             +  RL VL+ ++DGF IAE D++ R  G++LG +QSG+P F++A       +LE+AR 
Sbjct: 738 PEAKERLQVLEQSQDGFFIAEMDMQLRGPGQVLGTRQSGLPDFVLASLVEDREVLELARD 797

Query: 662 DAKHILTQDPDLT 674
            A+ ++ +D  L 
Sbjct: 798 AAQKVIEKDDTLN 810


>gi|238897837|ref|YP_002923516.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465594|gb|ACQ67368.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 697

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 239/650 (36%), Positives = 370/650 (56%), Gaps = 24/650 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS   GV   +   LS+I N  N       DLL + P  + DR +   I  +       
Sbjct: 14  PLSDLSGVSGNHLAKLSRI-NLYNVQ-----DLLLHLPLRYEDRTHLYSIENLEHGLFGA 67

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I Q +     +RR     + DGTG + L FF+   + ++N    G+ + V G++K+
Sbjct: 68  VQGRIVQ-AEMSSGRRRILTCQIEDGTGALILRFFHF-NKGIQNALSVGKDVMVYGEVKE 125

Query: 132 LKNRIIMVHPHYIFH--NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
               + M+HP +     N++ +   ++  +YS   GLS     K++ +AL+ L   P  E
Sbjct: 126 GYYGLEMIHPKFKIQGKNNETLLSTVLTPIYSTTEGLSQSTLNKLVGQALALLEATPIAE 185

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            +   L+   S  S+ EA   +H P K    E    W  PA  RL ++EL+A  ++LL  
Sbjct: 186 ILPSQLM--TSLISLPEAIKTLHRPPKNISLEKLTQWRHPACIRLIFEELMAYHLSLLTA 243

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  K    +P + +  + +  L ++ F  T +Q+  + +I +D+++   M+R++QGDVG
Sbjct: 244 RENAKHHRALPFSKKEALKKSFLSSLTFKMTSAQQRVVSEIERDLARSTPMMRLIQGDVG 303

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A    +  G Q  +MAP  ILA+QH    +++     +    + G      
Sbjct: 304 SGKTLVAALAALQVIAHGKQVALMAPTEILAEQHLTQFQQWFTPLGLSAGCLLGKQKGKL 363

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R+     IA G+  ++IGT A+FQ  +++  L LVI+DEQHRFGV QRL L  KA     
Sbjct: 364 RQAQQNAIASGKILMVIGTQAIFQAHVKFSALALVIIDEQHRFGVHQRLALWSKAEKQGF 423

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +++  ++D S I E P+ R PI TV+IP  R  E+I+R+K + 
Sbjct: 424 HPHQLIMTATPIPRTLTMSAYANLDTSIIDELPSDRIPIHTVVIPDTRRIEIIDRIKEIC 483

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           LSEG++AYW+C  I+E +    ++    +  L +      + ++HGR+ + +K+ +M +F
Sbjct: 484 LSEGRQAYWVCTLIDESELLEAQAAEVTYEELRKALPDIQMGLLHGRVKESEKDIIMQAF 543

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G  +LL+ATTVIEVGI+V +AS++IIEN E  GLAQLHQLRGR+GRG   S C+LLY 
Sbjct: 544 HRGEVQLLVATTVIEVGINVPNASLMIIENPERLGLAQLHQLRGRIGRGSIASYCVLLYK 603

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
            PLS+ +  RL +++ T DGF+IA++DL+ R  G++LG +Q+G  KF +A
Sbjct: 604 TPLSQVAQQRLQIMRETHDGFVIAQKDLEIRGPGQLLGTRQTGSLKFKVA 653


>gi|119475372|ref|ZP_01615725.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2143]
 gi|119451575|gb|EAW32808.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2143]
          Length = 697

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 241/643 (37%), Positives = 358/643 (55%), Gaps = 16/643 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLF+ P  + DR     I  +       I G + + +     +RR     L D TG +T
Sbjct: 37  DLLFHLPLRYQDRTRITPIGALQPGIDAVIEGEV-RAADIAFGRRRSLVCRLQDHTGTVT 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVY 160
           L FF+      +N    G  +   G+ ++  + + M HP Y  +   + + N   +  +Y
Sbjct: 96  LRFFHFSAAQKEN-LTNGVTLRCFGEARRGASGLEMYHPEYHAVDPLNPEPNEQSLTPIY 154

Query: 161 SLPTGLSVDLFKKIIVEALSRLP--VLPEWIEKDLLQKKSFP-SIAEAFNIIHNPRKAKD 217
               GLS   ++K+ ++AL+ L    L EW+ +      + P S+  A   +H+P     
Sbjct: 155 PSSEGLSQQGWRKLALQALTMLQPNTLIEWLPQSFNIGDTLPISLEHALQYLHSPPIDAP 214

Query: 218 FEWTSPAR----ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            E     +    ++LA++ELLA  ++LL +R Q  K    PI     + Q+ L  + F  
Sbjct: 215 VELLREGKHAYQQQLAFEELLAHNLSLLKLRNQTLKHGAPPIAKNSDLNQRFLHQLGFDF 274

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q+    +I +DMS    MLR++QGDVGSGKT+VA +A   A  +G Q  IMAP  IL
Sbjct: 275 TRAQQRVAAEIDRDMSSAKPMLRLVQGDVGSGKTVVAALAALNAAASGYQVAIMAPTEIL 334

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH     ++     + +  ++G +    R++ L+ IA     II+GTHALFQ  + + 
Sbjct: 335 AEQHLANFTRWMTPLGLDIGWLSGKVKGKQRQQQLKAIAEHSVDIIVGTHALFQQEVVFA 394

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +L L ++DEQHRFGV QRL L +KA      PH L+MTATPIPRTL +++  D+D S I 
Sbjct: 395 RLGLAVIDEQHRFGVHQRLALKEKANQDIGQPHQLIMTATPIPRTLAMSAYADLDTSVID 454

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           E P GR PI TV+I  NR  ++I+R++    EG++ YW+C  IEE      ++  +    
Sbjct: 455 ELPPGRTPISTVVIDNNRRSQIIDRVRNACVEGRQTYWVCTLIEESDTLEAQAAEDTCEQ 514

Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L        +A+IHGRM   +KES+M +FK     LL+ATTVIEVG+DV +AS++IIENA
Sbjct: 515 LKLALPDIKVALIHGRMKPSEKESIMAAFKANQIDLLVATTVIEVGVDVPNASLMIIENA 574

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E  GL+QLHQLRGRVGRG   S C+L+Y  PL K    RL +++ + DGF+IAE+DL+ R
Sbjct: 575 ERLGLSQLHQLRGRVGRGPTASHCVLMYQAPLGKLGKQRLQIMRQSSDGFVIAEKDLELR 634

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
             GE+LG +Q+G+ +  IA  E    LLE     A+ ++   P
Sbjct: 635 GPGELLGTRQTGLMQLRIANLERDSHLLEAVNILARQMINDHP 677


>gi|325922280|ref|ZP_08184061.1| ATP-dependent DNA helicase RecG [Xanthomonas gardneri ATCC 19865]
 gi|325547233|gb|EGD18306.1| ATP-dependent DNA helicase RecG [Xanthomonas gardneri ATCC 19865]
          Length = 714

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 252/705 (35%), Positives = 387/705 (54%), Gaps = 49/705 (6%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           PS      A LS+  GVG K +  F ++ I           DL  + P  + DR     I
Sbjct: 9   PSLAVAGQASLSSLPGVGPKVAEKFAARGIFT-------LQDLWLHLPLRYEDRTRLTTI 61

Query: 62  SEISEERIVTITGYI-SQHSSFQLQKRRP-YKILLNDGT-GEITLLFFYRKTEMLKNVFF 118
           +++       I G + +    F+    RP  ++ ++D + G + L FF+ +   +   F 
Sbjct: 62  AQLQGGVPAQIEGRVDAMERGFRF---RPVLRVAVSDDSHGTLVLRFFHFRAAQVAQ-FA 117

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIV 176
            G ++ V G  K  +N   +VHP Y +    +D      ++ VY +  G+     +K+I 
Sbjct: 118 PGTRVRVFGTPKPGQNGWEIVHPSYRVLAEGEDAGLGDSLDPVYPVLEGVGPATLRKLIG 177

Query: 177 EALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPAR 225
           +AL RLP       + P W     LQ +  PS+  A   +H P    D         PA+
Sbjct: 178 QALERLPPEAALELLPPHW-----LQDEQLPSLRAALLTMHRPPVNTDPQQLLAGGHPAQ 232

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +RLA +ELLA Q++L   R   ++     +   G + Q++   +PF  T +Q+   + I 
Sbjct: 233 QRLALEELLAHQLSLRRQRIALQRFRAPRLPGNGTLVQQLRAALPFQLTGAQQRVFEQIA 292

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
           +D+++ + MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + 
Sbjct: 293 RDLAKPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLTNLRGWL 352

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +   + +  + G +    R  A+  +A GQA +++GTHAL Q+++ ++ L L I+DEQHR
Sbjct: 353 EPLGVRIVWLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHR 412

Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           FGV QRL L  K  A    PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+
Sbjct: 413 FGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTI 472

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----------NFRSVVERFNSL 510
           ++   R  +++ER++   +EG++AYW+C  IEE +E              ++    F +L
Sbjct: 473 VLSAERRPDLVERIRAACAEGRQAYWVCTLIEESEEPGKGAPPGPPKIEAQAAEVTFEAL 532

Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                   +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIENAE
Sbjct: 533 SAQLPGVRVALVHGRMKPAEKQKAMLDFKQGHTDLLVATTVIEVGVDVPNASLMIIENAE 592

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
             GLAQLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+ R 
Sbjct: 593 RLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLELRG 652

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            GE+LG +Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 653 PGELLGTRQTGLASFRIADLARDAGLLPRVQVLAERLLAEAPEIA 697


>gi|300703084|ref|YP_003744686.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957]
 gi|299070747|emb|CBJ42042.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957]
          Length = 738

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 251/667 (37%), Positives = 372/667 (55%), Gaps = 44/667 (6%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ------HSSFQLQKRRPYKIL 93
           R +DL+ + P  + D      +  I+E      TG+ +Q       +   L+ RR   + 
Sbjct: 63  RDVDLVLHLPMRYEDET---TLLTIAEAIARANTGWAAQVEGAVTRNEVALRPRRQLVVY 119

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           + D +GE+ L F       +K +  EG ++ V G+++       MVHP  +   + D   
Sbjct: 120 IADDSGELVLRFLNFYGSQVKQMA-EGVRLRVRGEVRGGFFGAEMVHP-TVRPVAPDEPL 177

Query: 154 P-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP----SIAEAFNI 208
           P  +  VY    G++    +K I+ AL R P LPE +   L++    P    + AEA  +
Sbjct: 178 PDRLTPVYPSTAGVAQAYLRKAILNALGRTP-LPETLPDSLMRGPLAPLKLMAPAEAVRL 236

Query: 209 IHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPI----NVEG 259
           +H P    D     E T PA  R+ +DELLA Q++L   R Q  +     P+      +G
Sbjct: 237 LHQPTPDVDEHSLIERTHPAWLRIKFDELLAQQLSL--KRAQAARRTRSAPVLRAGGADG 294

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            +A + +  +PF  T +Q    ++I  D+++   M R+LQGDVGSGKT++A +A   A++
Sbjct: 295 LLA-RFMAALPFKLTGAQARVWEEIRADLARPYPMQRLLQGDVGSGKTVIAALAACQAID 353

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           AG QA +MAP  +LA+QHY  +  + +   + +  + G++ +  + +A  R+A G A ++
Sbjct: 354 AGRQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAARVAAGAAQLV 413

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------------PHVLLMT 427
           IGTHAL QDS+ + +L L +VDEQHRFGV QRL L  KA              PH L+M+
Sbjct: 414 IGTHALIQDSVTFARLGLAVVDEQHRFGVAQRLALRGKAGGADAPVAETAQPVPHQLMMS 473

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T   D+D+S I E P GR P+ T ++   R DEVIER+     EG++ YW
Sbjct: 474 ATPIPRTLAMTYYADLDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYW 533

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +CP IEE +    ++ VE F +L +      + ++HGR+   DK +VM +F  G   +L+
Sbjct: 534 VCPLIEESEALQLQTAVETFETLSQSLAGLKVGLVHGRLPSADKAAVMSAFAGGELHVLV 593

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S CILLY  PLS  +  
Sbjct: 594 ATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQAPLSPTAKQ 653

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKH 665
           RL  ++ T DGF IA  DL  R  GE LG +QSG      A    HD+ ++E A+  A+ 
Sbjct: 654 RLQTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLN-HDAWMVEFAQGAAEQ 712

Query: 666 ILTQDPD 672
           +L + P+
Sbjct: 713 MLARFPE 719


>gi|124025499|ref|YP_001014615.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str.
           NATL1A]
 gi|123960567|gb|ABM75350.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str.
           NATL1A]
          Length = 846

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 259/701 (36%), Positives = 395/701 (56%), Gaps = 57/701 (8%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + +S+ +GVG K +  LS +            DL+ Y P  ++D      I +    +
Sbjct: 147 LQSTISSVKGVGSKQAERLSTL------GLILIRDLINYFPRDYVDYSSLKTIDKTQAGQ 200

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTG--EITLLFFYRKTEML------KNVF 117
            VTI   + + SSF+  K     IL   + D TG  +IT  F  R++  +      ++++
Sbjct: 201 NVTIVAKVRRCSSFKSPKNPNLSILELFIKDKTGGMKITRFFAGRRSSSIAYVKSQQSLY 260

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE------------------AV 159
             G  + V+G +K+ K               + +N PLIE                   V
Sbjct: 261 PVGATVAVSGLVKESKY-------------GKSLNDPLIEIIDSPNGYLKSRTIGQILPV 307

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           YSL  G++ D F+ +I   L     + + + K+ L +   P   EAF  IHNP  +K   
Sbjct: 308 YSLTEGITADKFRDLIQSILYLTSNIKDPLPKETLNRLDLPYRKEAFFHIHNPANSKTL- 366

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ---KILRNIPFSPTKS 276
             + A+ R+ +DE L  Q++LLL R   KK     +++E  I     K L  +PFS T +
Sbjct: 367 --AKAKRRIVFDEFLLLQLSLLLRRDLHKKSDSPQLSIEPNINSLVGKFLSILPFSLTNA 424

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   +K+I  D+ +   M R+LQGDVGSGKT++A+ A+  AV++G Q   MAP  +LA Q
Sbjct: 425 QRRVLKEIESDIVKAEPMSRLLQGDVGSGKTVIAISALLTAVQSGWQGAFMAPTEVLASQ 484

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H++ + K+    +I V+++TG+ P++ R++ L  + +G   I++GTHALF+D + + +L 
Sbjct: 485 HFQTLSKWIPQLEINVDLLTGSTPKSRRKQILTDLVNGSTKILVGTHALFEDPVVFERLG 544

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LV+VDEQHRFGV+QR KL  K   PH+L MTATPIPRTL LT  GD+D+S++ E P GR 
Sbjct: 545 LVVVDEQHRFGVKQRNKLLNKGLQPHLLTMTATPIPRTLALTLHGDLDVSQLDELPPGRT 604

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PI T +I         + ++  + +G + Y + P IEE ++    S V+  + L     S
Sbjct: 605 PINTQLISPKDKKYAYDLIRSEIKKGHQIYVVLPLIEESEKLELSSAVDVHHQLSTEIFS 664

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             ++ ++HG+M  ++K+ V+ +F N    +L++TTVIEVG+DV +AS+++IE+++ FGLA
Sbjct: 665 EFNVELLHGKMKSVEKQEVIQNFINKKSDILVSTTVIEVGVDVPNASVMLIEDSDRFGLA 724

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG   S C LL H   +K S  RL VL N+ DGF I+E DL+ R  G++L
Sbjct: 725 QLHQLRGRVGRGATKSYC-LLSHQNKNKLSRQRLDVLVNSNDGFEISEIDLRFRGPGQVL 783

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           G KQSG+P F +A       +LEIARK+A+ IL  DP L++
Sbjct: 784 GTKQSGLPDFALASLADDADVLEIARKEARIILDSDPLLSN 824


>gi|86606655|ref|YP_475418.1| ATP-dependent DNA helicase RecG [Synechococcus sp. JA-3-3Ab]
 gi|86555197|gb|ABD00155.1| ATP-dependent DNA helicase RecG [Synechococcus sp. JA-3-3Ab]
          Length = 773

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 245/683 (35%), Positives = 399/683 (58%), Gaps = 33/683 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL   +G+G K +  L+++      +  R  D L+Y P   +D   R  I +      VT
Sbjct: 79  PLQFLKGIGPKSAEKLAQL----GLHTVR--DALYYFPRDHLDYSRRVLIRQAKVGETVT 132

Query: 72  ITGYISQHSSFQLQKRRPYKILLN----DGTGEITLLFFYRKTEM--------LKNVFFE 119
           + G +   S F   K  P   +LN    D +G +TL  FY   +         L+  + +
Sbjct: 133 LVGTVKSCSCFTSPKN-PLLTILNLKIADKSGIVTLSRFYSGRQFAQRSWQAALERQYPK 191

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN---FPLIEAVYSLPTGLSVDLFKKIIV 176
           G  +  +G +KK +  + + +P       +  +      I  VY L  G+  DL +K + 
Sbjct: 192 GAVVAASGLVKKGRLGLTLDNPQLEVLGGEGEDPERLGKILPVYPLSEGIPADLVRKAVQ 251

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            AL    ++ + + + L ++     +  A   IH P   K  E  + AR RL +DE    
Sbjct: 252 LALPAAALVEDPLPEPLKRQLQLLDLPLALQQIHFP---KTQELLAQARRRLVFDEFFYL 308

Query: 237 QIALLLMRKQFKKEI-GIP--INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           Q++LL  R++++ +   +P      G++  +  + +PF  T  Q+ AI +IL D+     
Sbjct: 309 QLSLLQRRQRYRAQAQAVPRYQPARGELLDRFYQILPFQLTAGQQRAIDEILADLRDPLP 368

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA+ A+ AA+++G QA +MAP  +LA+QHY  + ++    Q+ VE
Sbjct: 369 MNRLLQGDVGSGKTVVAVAALLAAIQSGWQAALMAPTEVLAEQHYRKLVEWLSQLQVPVE 428

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+ P A RR+ L ++  G+  +++GTHAL Q ++Q+  L LV++DEQHRFGV+QR  
Sbjct: 429 LLTGSTPPAKRREILRQLQTGELPLVVGTHALIQPAVQFRNLGLVVIDEQHRFGVEQRAA 488

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEVI 472
           L QK   P VL MTATPIPRTL L   GD+D+++I E P GRKP+ TV+  P +R+ +V+
Sbjct: 489 LQQKGDHPDVLTMTATPIPRTLTLALHGDLDVTQIDELPPGRKPVHTVVARPGDRL-QVV 547

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDK 530
             ++  +++G++AY + P IEE ++ + +S +E    L E       + ++HGR++  +K
Sbjct: 548 RLMEREIAQGRQAYVVLPLIEESEKLDLKSAIEEHQRLQEKVFPQFRVGLLHGRLTSSEK 607

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E+V+++F+     +L++TTV+EVG+DV +AS++++E+AE FGL+QLHQLRGRVGRG + +
Sbjct: 608 EAVIEAFRRRELDILVSTTVVEVGVDVPNASVMLVEHAERFGLSQLHQLRGRVGRGSDQA 667

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            CIL+     S+ +  RL VL+ + DGF IAE DL+ R  GE++G +QSG+P F +A   
Sbjct: 668 YCILMTGSQ-SEEALRRLKVLEQSHDGFFIAEMDLRFRGPGEVMGTRQSGLPDFALASLM 726

Query: 651 LHDSLLEIARKDAKHILTQDPDL 673
               +L++AR+ A+ ++ QDP+L
Sbjct: 727 DDQEVLQLARQAAEQLIAQDPEL 749


>gi|170691379|ref|ZP_02882544.1| ATP-dependent DNA helicase RecG [Burkholderia graminis C4D1M]
 gi|170143584|gb|EDT11747.1| ATP-dependent DNA helicase RecG [Burkholderia graminis C4D1M]
          Length = 746

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 244/627 (38%), Positives = 359/627 (57%), Gaps = 29/627 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I  +    I    G +  +      +R+    L +D  
Sbjct: 73  TRDIDLVLHLPMRYEDETSLTPIGHLLPGGIAQTEGVVFDNEIAYRPRRQLLVKLRDDAG 132

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G ++ V G ++     + MVHP        D + PL +A
Sbjct: 133 DELVLRFLNFYGSQVKQMAI-GARLRVRGDVRGGFFGMEMVHPAV---RVVDEDTPLPQA 188

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G++    +K I  ALSR  LP +LPE + +  LQ    PS+ +A   +H+P
Sbjct: 189 LTPVYPSTAGVTQAYLRKSIDNALSRTSLPELLPEAVARQWLQPLGVPSLMDAVRTLHHP 248

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIP---INVEGKIAQ 263
               D     + T PA  R+ ++ELLA Q++L      ++ +    +P   +  E  +  
Sbjct: 249 DAQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHDERRTRAAPAMPRRKLGDESALVA 308

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++L+ +PFS TK+QE    +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 309 RLLKALPFSLTKAQERVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAALAAAQAIDAGYQ 368

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTH
Sbjct: 369 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTH 428

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV QRL L  KA           PH L+M+ATPIPRT
Sbjct: 429 AIIQDTVEFARLGLVIVDEQHRFGVAQRLALRAKAQNAADGARDFQPHQLMMSATPIPRT 488

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R +EVI R++     G++ YW+CP IEE
Sbjct: 489 LAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTGRQVYWVCPLIEE 548

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 549 SETLQLQTAVETYETLVAALPELKVGLVHGRLAPAEKAAVMDAFTRNEVQLLVATTVIEV 608

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS  +  RL  ++ 
Sbjct: 609 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARARLQTMRE 668

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSG 640
           T DGF IA  DL+ R  GE LG +QSG
Sbjct: 669 TTDGFEIARRDLEIRGPGEFLGARQSG 695


>gi|261854752|ref|YP_003262035.1| ATP-dependent DNA helicase RecG [Halothiobacillus neapolitanus c2]
 gi|261835221|gb|ACX94988.1| ATP-dependent DNA helicase RecG [Halothiobacillus neapolitanus c2]
          Length = 692

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 250/678 (36%), Positives = 383/678 (56%), Gaps = 30/678 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE--ISE 66
           L  P+ +  GVG + +  L ++      +     DLL++ P  + +R     +    I +
Sbjct: 15  LHLPVDSLAGVGPRVAAQLVRL------SIESIGDLLWHLPLRYENRGQIVPLGYHLIGQ 68

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             ++ +T  I++  S    K R      +D    ITL  F R    L+     G+   + 
Sbjct: 69  SVLIHVT--IAEAKSLMRGKARQVAQGYDDAA-SITLWQFGRFGPTLQT----GQSYLLF 121

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVL 185
           G++++  + + M  P  I    Q      I  +Y    GLS    + ++ +AL   L  L
Sbjct: 122 GEVREGASGLEMAQPELI----QSAQLEAIVPIYPSTEGLSQSKLRTLVGQALRVALHDL 177

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW-TSPARERLAYDELLAGQIALLLMR 244
            E +   + Q+  +P++  A   IH P  A        PA  R+  +ELLA  +AL L R
Sbjct: 178 DECLPAPIRQRFGWPTMLAALQRIHAPVLADGVPTRDEPAFARMIGEELLAHLLALRLKR 237

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            +  ++    ++  G++ Q++L  + F PTK+Q   + +I  DM+Q + MLR++QGDVGS
Sbjct: 238 HEQSRDHAPRLSAPGRLYQELLAQLHFLPTKAQTRVLDEIRADMAQGSPMLRLVQGDVGS 297

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA  A   A+E G Q  +MAP  +LA+QH     ++     I V++++G    + R
Sbjct: 298 GKTLVAAGAALTAIEQGYQVALMAPTALLAEQHQRNFSQWFSPLGIDVQLLSGQQSASER 357

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----- 419
           R +L  +A  ++ ++IGTHALFQ+ + + +L LVIVDEQHRFGV QRL L+ K T     
Sbjct: 358 RASLAALAEARSLMVIGTHALFQERVAFDQLGLVIVDEQHRFGVHQRLALSDKGTHPDRA 417

Query: 420 --APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPRTL +++  D+D+S I E P GR PI T ++  +R D++IER+  
Sbjct: 418 GHRPHQLVMTATPIPRTLAMSAYADLDVSIIDELPPGRTPITTALVRSDRRDQLIERIST 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
           V +EG++AYW+CP +E+ +    ++       L E     ++ ++HGRMS  +K + M  
Sbjct: 478 VCAEGRQAYWVCPLVEDSERIEAQAAESTAELLREQLPHLTVGLVHGRMSAAEKNTQMAR 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+    LL+ATTVIEVG+DV +AS++IIENA+  GLAQLHQLRGRVGRG   S C+LL+
Sbjct: 538 FKSHEVDLLVATTVIEVGVDVPNASLMIIENADRMGLAQLHQLRGRVGRGRTDSYCVLLF 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             P+S  +  RLS+++ T+DGF +AE DL QR  GEILG +Q+G+ K  +A       LL
Sbjct: 598 DEPISDKARARLSLMRETQDGFRLAEADLAQRGPGEILGTRQTGLAKLRVADLVRDADLL 657

Query: 657 EIARKDAKHIL-TQDPDL 673
           + AR+ A  ++  Q PD+
Sbjct: 658 DTARQLADELIAAQSPDI 675


>gi|220909933|ref|YP_002485244.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 7425]
 gi|219866544|gb|ACL46883.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 7425]
          Length = 822

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 243/693 (35%), Positives = 400/693 (57%), Gaps = 32/693 (4%)

Query: 3   PSFLNP-LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           P+  +P L  PL+T  G+G K    L+K+            DLLFY+P   ID   +  I
Sbjct: 118 PTTRSPRLDQPLTTLSGIGPKSGDRLAKL------GLYTVRDLLFYYPRDHIDYARQVNI 171

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKT------- 110
           +++     VT+ G + + + F    R P     +IL+ D +G+I L  F+          
Sbjct: 172 ADLEAGATVTLVGTVRRCNCFS-SPRNPKLTILEILIRDRSGQIKLNRFWAGDRFRQRGW 230

Query: 111 -EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA-----VYSLPT 164
            E  K ++  G  I  +G +K+ K  + +  P     +  D     ++      VYSL  
Sbjct: 231 QEQQKRLYAPGVVIAASGLVKESKFGLTLEEPELEVLDQGDAKLDSLKVGRIVPVYSLSE 290

Query: 165 GLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPA 224
           G+  DL ++ +V AL     L E + + L Q     S+ EA   IH P    D E  + A
Sbjct: 291 GIPPDLVRRAVVSALPAAKHLTEPLPEKLRQPYELISLVEAIAHIHFP---PDSEALAKA 347

Query: 225 RERLAYDELL-AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           R+RL +DE        L   ++Q +++    +  +G + ++  + +PF  T +Q+  + D
Sbjct: 348 RQRLVFDEFFYLQLGLLQRRQQQRQQQQSAVLAPQGHLLEQFYQILPFQLTGAQQRVVND 407

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           IL D++Q   M R++QGDVGSGKT+VA++A+ AA+++G Q  +MAP  +LA+QHY  +  
Sbjct: 408 ILNDLTQPAPMNRLVQGDVGSGKTVVAVVALLAAIQSGYQTALMAPTEVLAEQHYRKLVD 467

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
           +     + VE++TG+   A RR+   ++  G+  +++GTHAL Q+ +++ +L LV++DEQ
Sbjct: 468 WFNRLCLPVELLTGSTKVAKRREIFAQLQTGELPLLVGTHALIQEGVEFQRLGLVVIDEQ 527

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           HRFGVQQR +L QK T+PHVL MTATPIPRTL LT  GD+D+S+I E P GR+ I+T ++
Sbjct: 528 HRFGVQQRARLQQKGTSPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQAIQTTVL 587

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAII 521
             +   +  + ++  +++G++ Y + P +EE ++ + +S ++    L E       + ++
Sbjct: 588 TASDRPQAYDLIRREIAQGRQVYIVLPLVEESEKLDLKSAIDEHQHLQETVFPQFRVGLL 647

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HGRM+   KE  ++ F+ G  +LL++TTV+EVG+D+ +A++++IE+AE FGL+QLHQLRG
Sbjct: 648 HGRMTAAAKEEAINEFRRGETQLLVSTTVVEVGVDIPNATVMLIEHAERFGLSQLHQLRG 707

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           RVGRG   S C+L+ +   ++ +  RL VL  ++DGF IAE DL+ R  GE+LG +QSG+
Sbjct: 708 RVGRGAAQSYCLLM-NSSRAETARQRLGVLAQSQDGFFIAEMDLRLRGPGEVLGTRQSGL 766

Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           P   +A+     ++LE++R  A+ ++  D  L 
Sbjct: 767 PDLALARLVEDQAVLELSRAAAEKVMAIDSTLA 799


>gi|209520459|ref|ZP_03269219.1| ATP-dependent DNA helicase RecG [Burkholderia sp. H160]
 gi|209499104|gb|EDZ99199.1| ATP-dependent DNA helicase RecG [Burkholderia sp. H160]
          Length = 760

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 252/661 (38%), Positives = 371/661 (56%), Gaps = 31/661 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I  +    I    G +  +     + RR   + L D  
Sbjct: 87  TRDIDLVLHLPMRYEDETSLTPIGHLLPGGIAQAEGVVFDNE-IAYRPRRQLLVKLRDAD 145

Query: 99  G-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
           G E+ L F       +K     G ++ V G ++     + MVHP        D + PL +
Sbjct: 146 GDELVLRFLNFYGSQVKQ-MAPGARLRVRGDVRGGFFGMEMVHPTV---RVVDEDTPLPQ 201

Query: 158 A---VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
           A   VY    G+S    +K I  AL+R  LP +LPE + +  L+    P++ +A   +H+
Sbjct: 202 ALTPVYPSTAGVSQAYLRKAIDNALARTSLPELLPEPVARAFLEPLGVPALMDAVRTLHH 261

Query: 212 PRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG--IP---INVEGKIA 262
           P    D     + T PA  R+ ++ELLA Q++L     + +      +P   +  E  + 
Sbjct: 262 PGAQSDETALMDGTHPAWVRIKFEELLAQQMSLKRAHDERRARAAPTMPRRKLGDESALV 321

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            ++L+ +PFS T +QE    +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG 
Sbjct: 322 ARLLKALPFSLTAAQERVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAALAAAQAIDAGY 381

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGT
Sbjct: 382 QAALMAPTEILAEQHARKLRGWLEPLGVKVAWLAGSLKTKEKRAAIEAAALGTAQLVIGT 441

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPR 433
           HA+ QD++++ +L LVIVDEQHRFGV QRL L  KA           PH L+M+ATPIPR
Sbjct: 442 HAIIQDAVEFARLGLVIVDEQHRFGVAQRLALRAKAQGAAAGAPDFQPHQLMMSATPIPR 501

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL +T   D+D+S I E P GR PI T ++   R +EVI R++     G++ YW+CP IE
Sbjct: 502 TLAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTGRQVYWVCPLIE 561

Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIE
Sbjct: 562 ESETLQLQTAVETYETLVAALPELKVGLVHGRLAPAEKATVMDAFTRNEIQLLVATTVIE 621

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS  +  RL  ++
Sbjct: 622 VGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARARLQTMR 681

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            T DGF IA  DL+ R  GE LG +QSG      A  +    L+E AR+ A  +L   PD
Sbjct: 682 ETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLQNDQHLIEPAREAAAKLLDHYPD 741

Query: 673 L 673
           +
Sbjct: 742 V 742


>gi|118594142|ref|ZP_01551489.1| ATP-dependent DNA helicase [Methylophilales bacterium HTCC2181]
 gi|118439920|gb|EAV46547.1| ATP-dependent DNA helicase [Methylophilales bacterium HTCC2181]
          Length = 677

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 229/596 (38%), Positives = 347/596 (58%), Gaps = 18/596 (3%)

Query: 85  QKRRPYKILLNDGTGEITLLF--FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142
           Q R+   +++ D TG + L F  FY         F EG  +   G++        M+HP 
Sbjct: 65  QPRKNLTVVIEDATGSLQLRFLNFYSSQS---RQFSEGVIVRAYGEVNPKSLIKEMIHPD 121

Query: 143 YIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           Y    +       +  +Y+L  GL     ++  KK   +   +  +L  + E ++  K++
Sbjct: 122 YEIIVTDKPLPKCLTPIYALTRGLGQKSILNFVKKTFDQIAKKDTLLDHFPELNI--KRN 179

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258
            P + ++   +H P   K  E   P R++L YDELLA Q+    +  Q K  I   I  +
Sbjct: 180 LPDLTKSLRELHMPSSTKP-EDIDPYRKKLIYDELLAHQLFFRGLYHQQKNYIAKKIIFD 238

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             +    + ++ F+ T  QE+   +I+ D+     M R+LQGDVGSGKT+VA +A   A+
Sbjct: 239 RSLHDAFVSSLEFTLTGQQENCFNEIMSDLGCSFPMNRLLQGDVGSGKTVVATMAALQAI 298

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           + GGQ   MAP  ILA+QHY  ++ +     I VE ++G++    ++   ER+  G+  +
Sbjct: 299 KNGGQVGFMAPTEILAEQHYIKLRDWLNPLNISVEFLSGSISAPEKKIIYERLVEGRIDL 358

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-----TQKATAPHVLLMTATPIPR 433
           ++GTHAL QD +++  L L I+DEQHRFGV+QRL++     T+     H L+M+ATPIPR
Sbjct: 359 LVGTHALIQDKVRFKSLALYIIDEQHRFGVEQRLQIRSNNKTRAHEEAHQLMMSATPIPR 418

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL ++   D+DIS I E P GR+PIKT +I  +R ++++  ++   +EG + YW+CP IE
Sbjct: 419 TLSMSYFADMDISTINELPPGRQPIKTKLISDSRRNDLLTIIQKHCNEGNQVYWVCPLIE 478

Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E +     +V   F  L   F S +IA+IHG+M   +KE++M +FK G  ++L+ATTVIE
Sbjct: 479 ESEVLQLETVENTFQQLSSFFKSQTIALIHGKMKQSEKETIMQTFKAGHTQILVATTVIE 538

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV +A+++IIENAE  GL+QLHQLRGRVGRG + S+CIL Y   L+  +  RL ++ 
Sbjct: 539 VGVDVPNATMMIIENAERMGLSQLHQLRGRVGRGSKQSTCILFYGKKLTDTAKDRLRIIY 598

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
              DGF I+EEDLK R  GE LG+KQSG+P   IA     D LL +A+ DA+++LT
Sbjct: 599 ENTDGFKISEEDLKLRGPGEFLGLKQSGLPSLKIANINKDDDLLALAKSDAEYLLT 654


>gi|193222220|emb|CAL60528.2| ATP-dependent DNA helicase recG [Herminiimonas arsenicoxydans]
          Length = 711

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 258/671 (38%), Positives = 380/671 (56%), Gaps = 45/671 (6%)

Query: 29  KIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE-----RIVTITGYISQHSSFQ 83
           K+I  G  ++   +D + + P  + D     +I  ISE      R V + G ++      
Sbjct: 38  KLIKLGLRSD---MDKVLHLPLRYEDE---TEIRSISEAGFIFGRSVQVEGVVTA-CEVA 90

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + RR   + ++D +G++ + F       +K +  EG ++   G+++       MVHP Y
Sbjct: 91  FRPRRQLVVTISDDSGQLVMRFLNFYGSQVKQMA-EGNRVRARGEVRHGFFGAEMVHPSY 149

Query: 144 IFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPVLPEW---IEKDLLQKK 197
                     PL  A   VY    GLS  L +K I++A++R+    EW   + + L    
Sbjct: 150 KMVTE---GAPLPSALTPVYPAGEGLSQTLLRKTIIDAMARI----EWRDTLSEQLRSSL 202

Query: 198 SFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQF-KKEIG 252
              S   A  ++HNP    D     + +  A  R+ +DELLA Q+++   R Q  ++E G
Sbjct: 203 DLMSFEPAVRLLHNPPPDIDESVLADRSHAAWVRMKFDELLAQQLSM--KRAQIARREKG 260

Query: 253 IPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
             +    GK+++  L+ +PFS T +Q+  ++++  D+ Q   M R+LQGDVGSGKT+VA 
Sbjct: 261 AAVLPTIGKLSKAFLKQLPFSLTAAQQRVLEEVRADLKQSFPMQRLLQGDVGSGKTVVAA 320

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           IA A A+++G QAV+MAP  ILA QH+  I  + +   + V  +TG++ +  + +A  RI
Sbjct: 321 IAAAQAIDSGFQAVLMAPTEILADQHFRKIAGWMEPLGVNVAWLTGSLKKKEKLEAKARI 380

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK---ATA-------P 421
             G A +IIGTHAL Q+ +Q+ KL LVIVDEQHRFGV QRL L  K   A+A       P
Sbjct: 381 ESGVAQLIIGTHALIQEDVQFSKLGLVIVDEQHRFGVGQRLVLRNKGLDASAAAAQQKIP 440

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+M+ATPIPRTL +T   D+++S I E P GR PI T +I  NR DEVIER+     E
Sbjct: 441 HQLMMSATPIPRTLAMTYYADLEVSVIDELPPGRTPIVTRVIDQNRRDEVIERVHAAALE 500

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP IEE +    ++  +   +L        + ++HGRM   DK+ VMD+F  G
Sbjct: 501 GRQVYWVCPLIEESEALQLQTATDTHQTLVAALPDLQVGLVHGRMKPADKQQVMDAFTRG 560

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S C+LLY  PL
Sbjct: 561 DIHVLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSTASVCLLLYQGPL 620

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
              +  RL +++ + DGF IA +DL+ R  GE LG +QSG      A  E    L++ AR
Sbjct: 621 GMVAKQRLRIMRESTDGFEIARKDLEIRGPGEFLGARQSGQAMLRFADLETDQWLVDRAR 680

Query: 661 KDAKHILTQDP 671
             A+ +L  DP
Sbjct: 681 DLAQTLLRDDP 691


>gi|294674608|ref|YP_003575224.1| ATP-dependent DNA helicase RecG [Prevotella ruminicola 23]
 gi|294473780|gb|ADE83169.1| ATP-dependent DNA helicase RecG [Prevotella ruminicola 23]
          Length = 697

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 244/647 (37%), Positives = 375/647 (57%), Gaps = 16/647 (2%)

Query: 41  FIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYISQHSSFQLQKRRPYKIL-LNDGT 98
           + DLL Y+P  ++DR     I E++ +   V + G+I    +F +  R+   +    DGT
Sbjct: 31  YGDLLEYYPYKYVDRSKVYTIHELTGDMPFVQVVGHILSFETFPMGPRKERVVAHFTDGT 90

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
           G I  L ++   +  K  +  G +  V GK     NRI   HP     +  D+    ++ 
Sbjct: 91  G-ICDLTWFNGGKYAKQNYKIGTEYLVFGKPTVFNNRINFTHPDLDDASKVDLTAMGLQP 149

Query: 159 VYSLP-----TGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
            Y+       +GL+    +++    + +LP  PE I   + Q         A   +H P+
Sbjct: 150 YYNTTEKMKKSGLNSRAIERLTKTLIEKLPPQPETIPDFIYQPLHLVGRDFALRTVHYPQ 209

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIGIPINVEGKIAQKILRN-IPF 271
            AKD E    AR RL ++EL   Q+ +L     Q +K  G   +  G +        +PF
Sbjct: 210 NAKDLER---ARLRLKFEELFFIQLNILRYASDQRRKFRGYVFSTVGDVFNTFYSQYLPF 266

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T +Q+  IK+I +DM    +M R+LQGDVGSGKTLVAL++M  A++ G QA IMAP  
Sbjct: 267 PLTGAQKRVIKEIRKDMGSGRQMNRLLQGDVGSGKTLVALMSMLIAIDNGYQACIMAPTE 326

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+QH + I  + ++  + V ++TG +    R + LE +  G  +I++GTHA+ +D++Q
Sbjct: 327 ILAEQHLQTIMGFLKDMNLRVALLTGMVKGKRREEVLEGLLDGTINILVGTHAVIEDTVQ 386

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           + +L  V+VDEQHRFGV QR KL  K+T  PHVL+MTATPIPRTL +T  GD+D+S I E
Sbjct: 387 FARLGFVVVDEQHRFGVAQRAKLWSKSTNPPHVLVMTATPIPRTLAMTLYGDLDVSIIDE 446

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P GRKP++T  +  +R+  + + ++  ++EG++ Y + P IEE  +S+ +++ + F  L
Sbjct: 447 LPPGRKPVQTTHVFDSRMTSLYDGIRRQINEGRQVYIVFPLIEESAKSDLKNLEDGFEVL 506

Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            E F    ++ +HGRM   DKE  M  F  G  ++L+ATTVIEVG++V +AS+++I  A+
Sbjct: 507 REAFPEFRLSKVHGRMKPKDKEEEMQRFVRGETQILVATTVIEVGVNVPNASVMVILEAQ 566

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            FGLAQLHQLRGRVGRG + S CIL+    LS+++  R+ ++ +T DGF IAE DLK R 
Sbjct: 567 RFGLAQLHQLRGRVGRGADQSYCILVTPFKLSEDTRKRIDIMCDTNDGFRIAEADLKLRG 626

Query: 630 EGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            G++ G +QSGM   L IA       ++++AR +A+ I+ +DP+  S
Sbjct: 627 PGDLEGTQQSGMAFDLKIADIARDGQIVQMARDEAQKIIDEDPECNS 673


>gi|187922703|ref|YP_001894345.1| ATP-dependent DNA helicase RecG [Burkholderia phytofirmans PsJN]
 gi|187713897|gb|ACD15121.1| ATP-dependent DNA helicase RecG [Burkholderia phytofirmans PsJN]
          Length = 832

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 249/660 (37%), Positives = 372/660 (56%), Gaps = 29/660 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I  +    I    G +  +      +R+    L +D  
Sbjct: 159 TRDIDLVLHLPMRYEDETSLTPIGHLLPGGISQTEGVVFDNEIAYRPRRQLLVKLRDDAG 218

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G ++ V G ++     + MVHP        D + PL +A
Sbjct: 219 DELVLRFLNFYGSQVKQMAI-GARLRVRGDVRGGFFGMEMVHPAV---RVVDEDTPLPQA 274

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G++    +K I  ALSR  LP +LPE + +  +     PS+ +A   +H+P
Sbjct: 275 LTPVYPSTAGVTQAYLRKSIDNALSRTSLPELLPEAVARTFMAPLGVPSLMDAVRTLHHP 334

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIP---INVEGKIAQ 263
               D     + T PA  R+ ++ELLA Q++L      ++ +    +P   +  E  +  
Sbjct: 335 GVQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHDERRTRAAPAMPRRKLGDEAALVA 394

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++L+ +PFS T +QE    +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 395 RLLKALPFSLTAAQERVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAALAAAQAIDAGYQ 454

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTH
Sbjct: 455 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTREKRAAIEAAALGTAQLVIGTH 514

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV QRL L  KA           PH L+M+ATPIPRT
Sbjct: 515 AIIQDAVEFARLGLVIVDEQHRFGVAQRLALRAKAQNAADGARDFQPHQLMMSATPIPRT 574

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R +EVI R++     G++ YW+CP IEE
Sbjct: 575 LAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTGRQVYWVCPLIEE 634

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 635 SETLQLQTAVETYETLVAALPELKVGLVHGRLAPAEKAAVMDAFTRNEVQLLVATTVIEV 694

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS  +  RL  ++ 
Sbjct: 695 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARARLQTMRE 754

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  +    L+E AR+ A  +L + P++
Sbjct: 755 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLQNDQWLIEPAREAAAVLLEKYPEV 814


>gi|134093582|ref|YP_001098657.1| ATP-dependent DNA helicase RecG [Herminiimonas arsenicoxydans]
          Length = 770

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 251/666 (37%), Positives = 376/666 (56%), Gaps = 35/666 (5%)

Query: 29  KIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE-----RIVTITGYISQHSSFQ 83
           K+I  G  ++   +D + + P  + D     +I  ISE      R V + G ++      
Sbjct: 97  KLIKLGLRSD---MDKVLHLPLRYEDE---TEIRSISEAGFIFGRSVQVEGVVTA-CEVA 149

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + RR   + ++D +G++ + F       +K +  EG ++   G+++       MVHP Y
Sbjct: 150 FRPRRQLVVTISDDSGQLVMRFLNFYGSQVKQMA-EGNRVRARGEVRHGFFGAEMVHPSY 208

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW---IEKDLLQKKSFP 200
                       +  VY    GLS  L +K I++A++R+    EW   + + L       
Sbjct: 209 KMVTEGAPLPSALTPVYPAGEGLSQTLLRKTIIDAMARI----EWRDTLSEQLRSSLDLM 264

Query: 201 SIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
           S   A  ++HNP    D     + +  A  R+ +DELLA Q+++   +   +++    + 
Sbjct: 265 SFEPAVRLLHNPPPDIDESVLADRSHAAWVRMKFDELLAQQLSMKRAQIARREKGAAVLP 324

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             GK+++  L+ +PFS T +Q+  ++++  D+ Q   M R+LQGDVGSGKT+VA IA A 
Sbjct: 325 TIGKLSKAFLKQLPFSLTAAQQRVLEEVRADLKQSFPMQRLLQGDVGSGKTVVAAIAAAQ 384

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           A+++G QAV+MAP  ILA QH+  I  + +   + V  +TG++ +  + +A  RI  G A
Sbjct: 385 AIDSGFQAVLMAPTEILADQHFRKIAGWMEPLGVNVAWLTGSLKKKEKLEAKARIESGVA 444

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK---ATA-------PHVLLM 426
            +IIGTHAL Q+ +Q+ KL LVIVDEQHRFGV QRL L  K   A+A       PH L+M
Sbjct: 445 QLIIGTHALIQEDVQFSKLGLVIVDEQHRFGVGQRLVLRNKGLDASAAAAQQKIPHQLMM 504

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL +T   D+++S I E P GR PI T +I  NR DEVIER+     EG++ Y
Sbjct: 505 SATPIPRTLAMTYYADLEVSVIDELPPGRTPIVTRVIDQNRRDEVIERVHAAALEGRQVY 564

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           W+CP IEE +    ++  +   +L        + ++HGRM   DK+ VMD+F  G   +L
Sbjct: 565 WVCPLIEESEALQLQTATDTHQTLVAALPDLQVGLVHGRMKPADKQQVMDAFTRGDIHVL 624

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S C+LLY  PL   + 
Sbjct: 625 VATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSTASVCLLLYQGPLGMVAK 684

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL +++ + DGF IA +DL+ R  GE LG +QSG      A  E    L++ AR  A+ 
Sbjct: 685 QRLRIMRESTDGFEIARKDLEIRGPGEFLGARQSGQAMLRFADLETDQWLVDRARDLAQT 744

Query: 666 ILTQDP 671
           +L  DP
Sbjct: 745 LLRDDP 750


>gi|189345929|ref|YP_001942458.1| ATP-dependent DNA helicase RecG [Chlorobium limicola DSM 245]
 gi|189340076|gb|ACD89479.1| ATP-dependent DNA helicase RecG [Chlorobium limicola DSM 245]
          Length = 706

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 251/710 (35%), Positives = 384/710 (54%), Gaps = 40/710 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           + + L+T +GVG K +  L +    G A      D   Y P  ++DR    +I E+    
Sbjct: 3   VLSSLTTLKGVGPKRATILEQ---AGIATPENLFD---YFPRRYLDRRTIRRIGELRAGE 56

Query: 69  IVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            VT+ G + Q      Q  R  +K++L DGTG I L +F +      +    G  + V G
Sbjct: 57  AVTVVGTVLQARLEGTQPGRMRFKVVLADGTGSIELTWF-KGVRYFASSVAPGDALAVNG 115

Query: 128 KIKKLKNRIIMVHPHY-------------------IFHNSQDVN-FPLIEAVYSLPTGLS 167
           K+     ++ M HP +                   +FH  + +  +P+  A+     GL 
Sbjct: 116 KVGVFGRQMQMQHPDFEHLSRTSVHENQEGGSDYELFHTGRIIPLYPVSAAMKQ--GGLH 173

Query: 168 VDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226
               + II  A  R P    E +   ++++     +AEA+  +H P   +  E    AR 
Sbjct: 174 SRQLRTIIAGAFERFPPGRDENLTPGIIREYGLLPLAEAYREMHFPSSPEKLE---EART 230

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDIL 285
           R+ + EL   Q+   L     ++    P     G++ ++    +PF+ T +Q+  I++I 
Sbjct: 231 RMKWTELFYTQLLFALKHAHLERNHSAPCFTHSGEVTRRFYAGLPFALTDAQKQVIREIY 290

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
           +D+ +   M R+LQGDVGSGKT+VA+ +MA A + G Q+  MAP  ILA QH+  +K+  
Sbjct: 291 RDLKRARPMNRLLQGDVGSGKTMVAMFSMALAADNGLQSAFMAPTEILAVQHFLSLKRSL 350

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
               I V ++ G   +  R  AL  +A G   + +GTHA+ +  + + +L LVI+DEQHR
Sbjct: 351 HPLGIDVALLAGRQRKKEREAALSGLADGSLTVAVGTHAMIEKGVSFSRLGLVIIDEQHR 410

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV QR  L  KA +PHVLLMTATPIPRTL +   GD+D+S I   PAGR PI+T ++  
Sbjct: 411 FGVLQRKALQDKAASPHVLLMTATPIPRTLTMAGFGDLDVSVIDAMPAGRVPIRTQLVSE 470

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHG 523
           +  + V E L+  ++ G++AY + P +EE ++ + R+ VE +  L         + +IHG
Sbjct: 471 HSKNRVYELLRREVASGRQAYIVYPLVEESEKIDLRAAVESYGELAATTLGDLRLGLIHG 530

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M+  +KES MD F+ G   +L+ TTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRV
Sbjct: 531 QMTPEEKESAMDRFRAGEIDVLVGTTVIEVGVDVPNATVMVIEHAERFGLAQLHQLRGRV 590

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG   SSC L+ H P S ++  RL  +++T DGF I+E D   R  G +LG +Q+GM  
Sbjct: 591 GRGRHASSCFLI-HAPFSGDAGERLRAMESTPDGFKISEIDAAIRGAGNVLGKEQAGMVS 649

Query: 644 FL-IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            L +A P L  SL++ ARK A  +  +D +L +     IR   YL  Y++
Sbjct: 650 GLKLADPLLDASLMQTARKAAFALAAEDGELRAREHAMIRS-CYLRYYHD 698


>gi|83595864|gb|ABC25226.1| ATP-dependent DNA helicase [uncultured marine bacterium Ant4D3]
          Length = 685

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/622 (37%), Positives = 356/622 (57%), Gaps = 23/622 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLF+ P+ + DR     +S +  +    + G I+  +S Q  +R    + ++     + 
Sbjct: 27  DLLFHLPNRYQDRTRLVPLSALKPKTACLVEGQITS-TSVQRGRRVSLLVGISHNNATLG 85

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE---AV 159
           L F +      K+ F  GR I   G I+     + MVHP Y+  +  DV   L +    +
Sbjct: 86  LRFMHFHANQAKS-FTAGRNIRCFGDIRPGPQGLEMVHPEYVMFD--DVPPALADQLTPI 142

Query: 160 YSLPTGLSVDLFKKIIVEALSRLP----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
           Y    GLS+    ++I  A  +L     VL E + + L+ +   PS+ E+   +H P   
Sbjct: 143 YPTTDGLSLTRMGQLISLAWFQLEQGKLVLDELLPQQLISRYQLPSLEESLKQLHYPTLH 202

Query: 216 KDFEW----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNI 269
           +D        +PA+ RL  +EL+A Q+ L   +KQ  +++  P+ V  EG +   +++N+
Sbjct: 203 QDLNQLQNEVTPAKLRLVLEELIAQQLTLSQAKKQ-SQQLPAPVMVIKEG-LEHGLIKNL 260

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  TK+Q+   +++  D+     M+R++QGDVGSGKT++A +A   A++ G Q  ++AP
Sbjct: 261 PFQLTKAQQRVWQEVASDLVTPAPMVRMVQGDVGSGKTVLAALAACRAIDNGCQVAVLAP 320

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH      +     + V  +TG      +R++L  I  G   +I+GTHALFQD+
Sbjct: 321 TEILAEQHLHSFSHWLNPLGVNVVWLTGKQKAQTKRQSLAAITSGDGQVIVGTHALFQDA 380

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           + Y  L LVI+DEQHRFGV QR  L +KA      H L+MTATPIPRTL +++ GD+D S
Sbjct: 381 VHYQHLGLVIIDEQHRFGVAQRHSLVKKAPQGCGLHQLVMTATPIPRTLAMSAYGDLDHS 440

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I E P GRKPI +V++  NR  +VIER+ +  S G++ YWICP IE        +    
Sbjct: 441 VIDELPPGRKPINSVLLNNNRRADVIERIHLACSSGQQVYWICPLIETSDVLQCEAAQAT 500

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              L +   +  + ++HGR++  +K   M  FK+G  +LL+ATTV+EVG+DV +A++++I
Sbjct: 501 AALLTQQLDNIKVGLVHGRLNGAEKADAMARFKSGDIQLLVATTVVEVGVDVPNANLMVI 560

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           +NAE  GLAQLHQLRGRVGRG+  S C+ +Y  PLSK    RL +L+ + DGF+IAE+DL
Sbjct: 561 DNAERLGLAQLHQLRGRVGRGQAQSHCLFMYQAPLSKMGRERLDILRQSNDGFVIAEKDL 620

Query: 626 KQRKEGEILGIKQSGMPKFLIA 647
           + R  GE+LG +Q+G     IA
Sbjct: 621 QLRGPGEVLGTRQAGAIGLRIA 642


>gi|323702705|ref|ZP_08114366.1| ATP-dependent DNA helicase RecG [Desulfotomaculum nigrificans DSM
           574]
 gi|323532368|gb|EGB22246.1| ATP-dependent DNA helicase RecG [Desulfotomaculum nigrificans DSM
           574]
          Length = 685

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 240/668 (35%), Positives = 384/668 (57%), Gaps = 21/668 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+   +GVG   S  L ++            DLL++ P  + DR         +   + T
Sbjct: 7   PVQFLKGVGPSRSKQLERL------GIITIEDLLYHFPREYHDRSLIRPAHSFAHGEMAT 60

Query: 72  ITGYISQHSSFQLQKRRPY---KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           + G +   S  + + RR     K+ L DG      ++F      +K  +  G+K+ +TGK
Sbjct: 61  VKGTVIGGS--ETKPRRGLTITKLALQDGAATFYAVWF--NQPYIKKQYTTGKKLLITGK 116

Query: 129 I-KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LP 186
           I +      + V  H +    + ++   I  +Y     +S    + II  AL ++   +P
Sbjct: 117 IDRNFGLPQVHVTDHELLDGDEGLHSGRIVPIYPATENVSQRFLRSIIKFALDQIGTQVP 176

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E++   +L + + P + EA   IH PR   D E    AR+R   +EL   Q+ L L R  
Sbjct: 177 EFLPDKILDRYNLPCLPEALYNIHFPR---DMESCQRARKRFILEELFLFQLGLGLQRSY 233

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
             ++  +    +G++  ++L+N+PFS T +Q+   ++I  D+   + M R+LQGDVG+GK
Sbjct: 234 LTRQPKMHRYNQGRLTGQLLQNLPFSLTAAQQRVWQEIESDLQGPHPMNRLLQGDVGAGK 293

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA +A+  A E+G Q  +MAP  +LA+QH   IK++ +   I V ++TG+  +  R++
Sbjct: 294 TVVAALALCRAAESGLQGSLMAPTELLAEQHARSIKEFLEPLGIKVALLTGSSKRG-RQQ 352

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            L  IA+G   +++GTHAL  + +Q+  L LV+VDEQHRFGV+QR  L  K   P +L+M
Sbjct: 353 VLADIANGVIPVVVGTHALIYEQVQFKNLGLVVVDEQHRFGVRQRAALLDKGYRPDMLVM 412

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL LT  GD+D+S I E P GR+ IKT  + + +  + +  ++    +G+++Y
Sbjct: 413 TATPIPRTLALTLYGDLDVSVIDELPPGRQDIKTYHLTLAQAGKAVGLIRQQADQGRQSY 472

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            +CP +EE ++ + ++ ++ F  L +   S  + ++HGRM   +KESVM +F+ G+  +L
Sbjct: 473 VVCPLVEESEKLDTQAAIDLFERLQKALPSCRVGLLHGRMKANEKESVMTAFRQGSLDVL 532

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ + P +K + 
Sbjct: 533 VSTTVIEVGVDVPNATVMVIWDAQRFGLAQLHQLRGRVGRGSQQSYCILVAN-PTTKEAQ 591

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+  +  T+DGF++AEEDLK R  GE  G +QSG+P F IA        +  ARK+A  
Sbjct: 592 ERIKAMCRTQDGFVLAEEDLKLRGPGEFFGTRQSGLPNFKIADLVRDRREVAQARKEAAQ 651

Query: 666 ILTQDPDL 673
           +L QDPDL
Sbjct: 652 LLAQDPDL 659


>gi|290473314|ref|YP_003466180.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Xenorhabdus bovienii SS-2004]
 gi|289172613|emb|CBJ79382.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Xenorhabdus bovienii SS-2004]
          Length = 693

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 248/661 (37%), Positives = 373/661 (56%), Gaps = 46/661 (6%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T RGVG      ++K+   G  N    +  L      + D+     I+++      T
Sbjct: 10  PLTTLRGVGASQ---VTKLAKLGLVNLQDLLLHLP---LRYEDQTRLYSINDLLPGVYAT 63

Query: 72  ITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           +TG +   H +F   +RR     ++DGTG +TL FF   T  +KN   EG+ +   G+I+
Sbjct: 64  VTGEVLRTHVTFG--RRRIMTCQISDGTGVLTLRFF-NFTAAMKNNLAEGKHVIAYGEIR 120

Query: 131 KLKNRIIMVHPHYIFHNS------QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183
           +      ++HP Y           QD   P    +Y    G+     +K+I +AL  L  
Sbjct: 121 RGNQGPEIIHPEYKTQQHAERIQLQDTLTP----IYPTTEGVRQTTLRKLIEQALELLDT 176

Query: 184 -----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDE 232
                +LPE   + L+      S+  A + +H P    D   T       PA+ RL  +E
Sbjct: 177 CVINELLPEEFSRKLI------SLPNALHTLHRP--PPDVSLTDLDNRRHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++     +  +  + Q+++  +PF PT +Q   + +I QD+ +  
Sbjct: 229 LLAHHLSMLAVRAGAQRFHAQQLTADNSLKQQLISQLPFVPTGAQVRVVAEIEQDLEKNV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   I V
Sbjct: 289 PMMRLIQGDVGSGKTLVAALAALRALVHGKQVALMAPTELLAEQHANTFRQWFEPLGIQV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA+GQ  +++GTHA+FQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIANGQVSMVVGTHAMFQEQVRFSGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGCEQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +E+I+R+K   L EG++AYW+C  IE+ +    ++       L        I ++HGRM 
Sbjct: 469 NEIIQRIKSACLDEGRQAYWVCTLIEDSEVLEAQAAQATSEELALILPDLKIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+++MD+FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQTIMDAFKRGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PL+  +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F I
Sbjct: 589 AVASHCVLLYKTPLTNTAKIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFRI 648

Query: 647 A 647
           A
Sbjct: 649 A 649


>gi|225076550|ref|ZP_03719749.1| hypothetical protein NEIFLAOT_01598 [Neisseria flavescens
           NRL30031/H210]
 gi|224952113|gb|EEG33322.1| hypothetical protein NEIFLAOT_01598 [Neisseria flavescens
           NRL30031/H210]
          Length = 730

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 229/600 (38%), Positives = 344/600 (57%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK   +   M
Sbjct: 115 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASNQKQMAIGKRIRAVGEIKHGFHGDEM 174

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP      S  +   L   +Y    GL+    ++II  AL   P L + +   LL +  
Sbjct: 175 IHPKIRDAESSGLAESLT-PIYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLK 232

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 233 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGSATA 292

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q +   +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 293 LGGDGTLTQALRHALPFALTDAQERVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSA 352

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   + V  ++G+  +  + +A  ++A G
Sbjct: 353 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKTKLADG 412

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D +++  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 413 TVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRT 472

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE
Sbjct: 473 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEE 532

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEV
Sbjct: 533 SETLQLQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAEFAAGCLNVLVATTVIEV 592

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+  
Sbjct: 593 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYE 652

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A  E    LLE AR+ A  ++ Q+P++
Sbjct: 653 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPLLIEQNPEI 712


>gi|161525831|ref|YP_001580843.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans ATCC
           17616]
 gi|189349448|ref|YP_001945076.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans ATCC
           17616]
 gi|160343260|gb|ABX16346.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans ATCC
           17616]
 gi|189333470|dbj|BAG42540.1| ATP-dependent DNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 791

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 247/661 (37%), Positives = 372/661 (56%), Gaps = 27/661 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY-ISQHSSFQLQKRRPYKILLNDG 97
           TR IDL+ + P  + D      I ++    I    G  I    +++ +++   KI  +DG
Sbjct: 118 TRSIDLVLHLPMRYEDETTLTPIRDLLPGGIAQTEGVVIDNEVAYRPRRQLVVKIRDDDG 177

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LI 156
             ++ L F       +K +   G+++ V G ++     + MVHP      + D   P ++
Sbjct: 178 E-QLVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVL 234

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
             VY    G+S    +K I  AL R P+   LP  IE+D L+    P++A+A  I+H+P 
Sbjct: 235 TPVYPSTAGVSQAYLRKAIENALERTPLPELLPPEIERDYLKPLGVPTLADAVRILHHPG 294

Query: 214 KAKD----FEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIPINVE---GKIAQK 264
              D     + + PA  R+ ++ELLA Q++L      ++ +    +P         +  +
Sbjct: 295 VDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRTARDTDALTTR 354

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +   +PF  T +Q   + +I  D++  + M R+LQGDVGSGKT+VA +A A A++AG QA
Sbjct: 355 LYAALPFRLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQA 414

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTHA
Sbjct: 415 ALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAAIEAAALGTAELVIGTHA 474

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTL 435
           + QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL
Sbjct: 475 IIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAQGFQPHQLMMSATPIPRTL 534

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +T   D+D+S I E P GR P+ T ++   R DEVI R++     G++ YW+CP IEE 
Sbjct: 535 AMTYYADLDVSTIDELPPGRTPVLTRVVGDARRDEVIARVREAALTGRQVYWVCPLIEES 594

Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           +    ++ VE + +L        + ++HGR+S  DK +VMD+F     +LL+ATTVIEVG
Sbjct: 595 ETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAFTRNEVQLLVATTVIEVG 654

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL  ++ T
Sbjct: 655 VDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYSGPLSIAGRERLKTMRET 714

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            DGF IA  DL+ R  GE LG +QSG      A  E    L++ AR  A  ++   PD+ 
Sbjct: 715 TDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAAARLIAAYPDVV 774

Query: 675 S 675
           +
Sbjct: 775 T 775


>gi|20807935|ref|NP_623106.1| RecG-like helicase [Thermoanaerobacter tengcongensis MB4]
 gi|20516504|gb|AAM24710.1| RecG-like helicase [Thermoanaerobacter tengcongensis MB4]
          Length = 682

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 252/639 (39%), Positives = 387/639 (60%), Gaps = 19/639 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY--KILLNDGTGE 100
           DL+FY P  + DR    KI ++      T   YI+  S+ +++  R    KI + DGTG 
Sbjct: 31  DLIFYFPRDYEDRSEIVKIEDLIVGEKQTFKAYIA-GSAREVKTSRVVITKIPVKDGTGA 89

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL--IEA 158
           + L+++      +KN F  G +  ++GK++    ++++ +P  +  + +D+N     I  
Sbjct: 90  VELVWY--NQPYMKNNFKIGEEYIISGKLQFKYGQLVVENP-VLEKSEEDLNLNTGRIVP 146

Query: 159 VYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VY L  GL+ ++ +K+I  ALS  L  + E+ E++ L++K   ++ EA   IH P   KD
Sbjct: 147 VYGLTEGLTQNILRKVIFNALSEYLDEVEEFFEEEFLREKGLMNLKEALLNIHFP---KD 203

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK-ILRNIPFSPTKS 276
            E  + A+ RL Y EL   Q+AL L++K  K++ GI      K+  K  + N+PF  T +
Sbjct: 204 EEKLARAKYRLKYQELFLLQLALFLVKKSVKEKRGIRFR---KVDIKPFVSNLPFKLTSA 260

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   +K+I+ DM+    M R++QGDVGSGKT+VA  AM  A + G Q  +MAP  ILA+Q
Sbjct: 261 QMKVLKEIILDMASDKVMNRLIQGDVGSGKTIVAAFAMYIAAKNGYQVAMMAPTEILAKQ 320

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY+ +++  + T I + +++G++  + R++ LE+I  G+  +++GTHAL ++ + +  L 
Sbjct: 321 HYKTLEEIFKGTDIRIGLLSGSLSPSGRKEVLEKIEKGEYDVVVGTHALIEEDVSFKNLG 380

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L I DEQHRFGV+QR  L QK   P VL+MTATPIPRTL L   GD+DIS I + P GRK
Sbjct: 381 LCITDEQHRFGVRQRALLAQKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRK 440

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514
            +KT +IP +   +  E     + +G++ Y +CP IEE  +    S    +  +++    
Sbjct: 441 RVKTYVIPSSMRKKAYEFAIKEVKKGRQVYVVCPLIEESDKIKAASAEIVYREIYKDAFK 500

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + + ++HG+MSD DKE +M++F  G   +L++TTVIEVG++V +A+++I+ENAE FGLA
Sbjct: 501 EARVGLLHGKMSDSDKERIMEAFVRGEIDILVSTTVIEVGVNVPNATVMIVENAERFGLA 560

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGR E  S CIL+ + P S+ +  RL VL  T DGF IAE DL+ R  GE L
Sbjct: 561 QLHQLRGRVGRSEFQSYCILINYSP-SETAKKRLEVLARTSDGFKIAERDLEIRGPGEFL 619

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           G KQ G+P+F IA       +L+  +KD + +L +DP L
Sbjct: 620 GEKQHGLPEFKIANLFEDIDILKRVQKDVESLLEEDPKL 658


>gi|207721611|ref|YP_002252050.1| atp-dependent dna helicase protein [Ralstonia solanacearum MolK2]
 gi|206586772|emb|CAQ17357.1| atp-dependent dna helicase protein [Ralstonia solanacearum MolK2]
          Length = 730

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 250/665 (37%), Positives = 371/665 (55%), Gaps = 44/665 (6%)

Query: 42  IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ------HSSFQLQKRRPYKILLN 95
           +DL+ + P  + D      +  I+E      TG+ +Q       +   L+ RR   + + 
Sbjct: 57  VDLVLHLPMRYEDET---TLLTIAEAIARANTGWAAQVEGAVTRNEVALRPRRQLVVHIA 113

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP- 154
           D +GE+ L F       +K +  EG ++ V G+++       MVHP  +   + D   P 
Sbjct: 114 DDSGELVLRFLNFYGSQVKQMA-EGVRLRVRGEVRGGFFGAEMVHP-TVRAVAPDEPLPD 171

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP----SIAEAFNIIH 210
            +  VY    G++    +K I+ AL R P LPE +   L++    P    + AEA  ++H
Sbjct: 172 RLTPVYPSTAGVAQAYLRKAILNALGRTP-LPETLPDSLMRGPLAPLKLMAPAEAVRLLH 230

Query: 211 NPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPI----NVEGKI 261
            P    D     E T PA  R+ +DELLA Q++L   R Q  +     P+      +G +
Sbjct: 231 QPTPDVDEHSLVERTHPAWLRIKFDELLAQQLSL--KRAQAARRTRSAPVLRAGGAQGLL 288

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           A + +  +PF  T +Q    ++I  D+++   M R+LQGDVGSGKT++A +A   A++AG
Sbjct: 289 A-RFMAALPFKLTGAQARVWEEIRADLARPYPMQRLLQGDVGSGKTVIAALAACQAIDAG 347

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA +MAP  +LA+QHY  +  + +   + +  + G++ +  + +A  R+A G A ++IG
Sbjct: 348 RQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAARVAAGAAQLVIG 407

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------------PHVLLMTAT 429
           THAL QDS+ + +L L +VDEQHRFGV QRL L  KA              PH L+M+AT
Sbjct: 408 THALIQDSVTFARLGLAVVDEQHRFGVAQRLALRGKAGGADAPVAETAQPVPHQLMMSAT 467

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL +T   D+D+S I E P GR P+ T ++   R DEVIER+     EG++ YW+C
Sbjct: 468 PIPRTLAMTYYADLDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYWVC 527

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P IEE +    ++ VE F +L +      + ++HGR+   DK +VM +F  G   +L+AT
Sbjct: 528 PLIEESEALQLQTAVETFETLSQSLAGLKVGLVHGRLPSADKAAVMSAFAGGELHVLVAT 587

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S CILLY  PLS  +  RL
Sbjct: 588 TVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQAPLSPTAKQRL 647

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHIL 667
             ++ T DGF IA  DL  R  GE LG +QSG      A    HD+ ++E A+  A+ +L
Sbjct: 648 QTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLN-HDAWMVEFAQGAAEQML 706

Query: 668 TQDPD 672
            + P+
Sbjct: 707 ARFPE 711


>gi|254797042|ref|YP_003081879.1| ATP-dependent DNA helicase RecG [Neorickettsia risticii str.
           Illinois]
 gi|254590278|gb|ACT69640.1| ATP-dependent DNA helicase RecG [Neorickettsia risticii str.
           Illinois]
          Length = 675

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/636 (36%), Positives = 345/636 (54%), Gaps = 13/636 (2%)

Query: 33  CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG-YISQHSSFQLQKR--RP 89
           C   + +R +DLL Y P  F++R     I+   E   VTI   Y      F   +R  R 
Sbjct: 23  CNLVSGSRVVDLLLYKPRGFVNRCNFKAIANSVEGEFVTIEARYEGSKEHFHRFRRVKRF 82

Query: 90  YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ 149
           +K    D   +   + F+ KT + + +   G    V G++        M HP  I   S+
Sbjct: 83  HKFFFKDKNEDSLEVIFFAKTYLQRKLKI-GEWYLVNGRMGASAQ---MFHPDKILRLSE 138

Query: 150 DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209
                  E  Y L  G++   F  ++   L       EW+EK  L+K S  S  +A   +
Sbjct: 139 LAKLSAFEPKYRLSDGVTNHQFLSLVDRLLKSSKPPEEWLEKASLKKNSLISWGKAIEQL 198

Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
           H+P    +FE    A +RLAYDE+LA  +    +  Q   +   PI  +G +   +   +
Sbjct: 199 HHPSSEVEFE---QACKRLAYDEILAMHLVNNSLYAQVLNQKKEPIKGDGSMTALLRSRL 255

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PFS T  QE  I+ I     Q  RM+ +LQGDVGSGKTLV + AM  AVE G Q V+++P
Sbjct: 256 PFSLTAGQEEVIEKIHVLQGQTVRMIALLQGDVGSGKTLVVIFAMLNAVEMGKQVVLLSP 315

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH+E ++K     + +  ++TG      R + L+ I  G   +I+ THA+    
Sbjct: 316 TIVLAKQHFEVLQKLVPELKPV--LLTGGQVACSREQFLQDIRSGNVKVIVATHAILAVE 373

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + ++ L L+++DEQHRFG  QR KL ++     ++L++ATPIPRT+     G I +  + 
Sbjct: 374 VLFFDLGLLVIDEQHRFGANQRTKLIRENPGADLVLVSATPIPRTIGQVLFGSITLLNLR 433

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           EKP  R  + T  +  ++I  +IER++V+L +G K +WICP IEE + S   SV ERF  
Sbjct: 434 EKPKSRPLVTTSTVTKSKITTLIERIRVILGKGSKVFWICPVIEESENSKVVSVTERFRL 493

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +HF   +  +HG +S    E  +  F+NG  K+L+ATTV+EVG+D+ D  +I+IE+A+
Sbjct: 494 LKKHFADEVDCVHGVLSAQKMEEKLTLFRNGKTKILLATTVVEVGVDIPDVDVIVIEDAD 553

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP-PLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           HFGLAQLHQLRGRVGRG + S CILLY    +++N   RL +L+ + DGF IAEED K R
Sbjct: 554 HFGLAQLHQLRGRVGRGNKNSFCILLYDSQKITENGKKRLKILRESSDGFFIAEEDFKLR 613

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             G+I G++QSG  KF         S  + A ++A+
Sbjct: 614 GVGDIFGVRQSGFYKFKFLDRPFEHSFFDSASREAQ 649


>gi|119511272|ref|ZP_01630387.1| DNA helicase [Nodularia spumigena CCY9414]
 gi|119464063|gb|EAW44985.1| DNA helicase [Nodularia spumigena CCY9414]
          Length = 823

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 232/650 (35%), Positives = 374/650 (57%), Gaps = 23/650 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99
           DLL+Y+P   ID   +  I E+     VTI   + + + F   K +   IL   L D TG
Sbjct: 154 DLLYYYPRDHIDYARQVNIGELQGGETVTIIANVKRCNCFTSPKNKKLSILELVLKDNTG 213

Query: 100 EITLLFFYRKTEMLKNVFFEGRK--------ITVTGKIKKLKNRIIMVHPHY--IFHNSQ 149
           EI +  F          + EG K        +   G +K+ K  + + +P    + H   
Sbjct: 214 EIKITRFSAGARFASRGWQEGLKRRYPVGSILAACGLVKESKYGLTLDNPELEVLAHPGD 273

Query: 150 DVNFPLIEAV---YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
            ++   I  V   Y+L  G+   + ++ I  AL     L + + K L  K +   + +A 
Sbjct: 274 AIDSLTIGRVVPIYALTEGVMATMVRQAITAALPATVHLKDPLPKGLRTKYNLMELKDAI 333

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKI 265
             IH P ++   +    AR RL +DE    Q+ LL  + Q ++ +    +  +G++ +K 
Sbjct: 334 ANIHFPDESATLQ---AARRRLVFDEFFYLQLGLLQRQHQARQIQTSAILAPKGQLVEKF 390

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF  T +Q+  + DIL D+ +   M R++QGDVGSGKT+VA+IA+ AA+++G QA 
Sbjct: 391 SEILPFELTGAQQRVLNDILTDLEKSTPMNRLIQGDVGSGKTVVAVIAILAAIQSGYQAA 450

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  +LA+QHY  +  +     + VE++TG+   A RR+   ++  G+  +++GTHAL
Sbjct: 451 LMAPTEVLAEQHYRKLVSWFNLLHLPVELLTGSTKVAKRREIHSQLVTGELPLLVGTHAL 510

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            QD++ + +L LV++DEQHRFGV+QR  L QK   PHVL MTATPIPRTL LT  GD+++
Sbjct: 511 IQDTVNFNQLGLVVIDEQHRFGVKQRALLQQKGDQPHVLTMTATPIPRTLALTIHGDMNV 570

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S+I E P GR+ I+T ++   +  E  + ++  +++G++ Y + P +EE ++ + RS VE
Sbjct: 571 SQIDELPPGRQKIQTTMLTGKQRTEAYDLMRREIAQGRQVYIVLPLVEESEKLDLRSAVE 630

Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
               L E       + ++HGRMS  DK+  +  F++   ++L++TTV+EVG+DV +A+++
Sbjct: 631 EHQKLQESIFPDFQVGLLHGRMSSADKDEAITKFRDNHTQILVSTTVVEVGVDVPNATVM 690

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +IENAE FGL+QLHQLRGRVGRG   S C+L+     S ++  RL VL+ ++DGF I+E 
Sbjct: 691 LIENAERFGLSQLHQLRGRVGRGAAQSYCLLMSSSK-SADAQQRLKVLEQSQDGFFISEM 749

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           D++ R  GE+LG +QSG+  F +A     + +L +AR+ A+ ++  D  L
Sbjct: 750 DMRFRGPGEVLGTRQSGVADFTLASLVEDEEILLLARQVAEKVIEMDATL 799


>gi|152980116|ref|YP_001352039.1| ATP-dependent DNA helicase RecG [Janthinobacterium sp. Marseille]
 gi|151280193|gb|ABR88603.1| RecG-like helicase [Janthinobacterium sp. Marseille]
          Length = 743

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 250/668 (37%), Positives = 375/668 (56%), Gaps = 39/668 (5%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE-----RIVTITGYISQHSSF 82
            K+I  G  ++   +D + + P  + D     +I  ISE      R V + G ++     
Sbjct: 69  DKLIKLGLRSD---MDKVLHLPMRYEDE---TEIKSISEAGFIFGRSVQVEGVVTS-CEV 121

Query: 83  QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142
             + RR   + ++D TG++ + F       +K +  EG ++   G+++       MVHP+
Sbjct: 122 AFRPRRQLVVTISDDTGQLVMRFLNFYGSQVKQMA-EGNRVRARGEVRHGFFGAEMVHPN 180

Query: 143 YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK----- 197
           Y            +  VY    GLS  + +K I++A++R+    EW  +D L  K     
Sbjct: 181 YKMVVEGAPLPAALTPVYPAGEGLSQTILRKTILDAMTRI----EW--RDTLNDKLRGEL 234

Query: 198 SFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
                  A  ++HNP    D     + +  A  R+ +DELLA Q+++   +   + +   
Sbjct: 235 DLMPFEPAVRLLHNPPPDIDESALADRSHAAWVRMKFDELLAQQLSMKRAQMARRAKGAA 294

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            +   GK+++  L+ +PFS T +Q+  +++I  D+ Q   M R+LQGDVGSGKT+VA +A
Sbjct: 295 VLPSIGKLSKAFLKQLPFSLTGAQQRVLEEIRADLKQSFPMQRLLQGDVGSGKTVVAALA 354

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
            A A+++G QAV+MAP  ILA QH+  I  + +   + V  +TG++ +  + +A  RI  
Sbjct: 355 AAQAIDSGFQAVLMAPTEILADQHFRKIAGWMEPLGVNVAWLTGSLKKKEKLEAKARIEA 414

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL----------TQKATAPHV 423
           G A +IIGTHAL Q+ +Q+ KL LVIVDEQHRFGV QRL L           Q+ T PH 
Sbjct: 415 GTAQLIIGTHALIQEDVQFAKLGLVIVDEQHRFGVGQRLVLRNKGVDNNASAQQQTIPHQ 474

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL +T   D+++S I E P GR PI T +I  NR DEVIER+     EG+
Sbjct: 475 LMMSATPIPRTLAMTYYADLEVSVIDELPPGRTPIVTRVIDQNRRDEVIERVHAAALEGR 534

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + YW+CP IEE +    ++  +   +L E      + ++HGRM   +K+ VMD+F  G  
Sbjct: 535 QVYWVCPLIEESEALQLQTATDTHQTLVEALPDLQVGLVHGRMKPAEKQQVMDAFTRGEI 594

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ATTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S C+LLY  PL  
Sbjct: 595 HVLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSTASVCLLLYQGPLGM 654

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL +++ + DGF IA +DL+ R  GE LG +QSG      A  E    L++ AR  
Sbjct: 655 IAKQRLRIMRESTDGFEIARKDLEIRGPGEFLGARQSGQAMLRFADLETDQWLVDRARDL 714

Query: 663 AKHILTQD 670
           A+ +L  D
Sbjct: 715 AQTLLRDD 722


>gi|300725972|ref|ZP_07059433.1| ATP-dependent DNA helicase RecG [Prevotella bryantii B14]
 gi|299776756|gb|EFI73305.1| ATP-dependent DNA helicase RecG [Prevotella bryantii B14]
          Length = 700

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 248/677 (36%), Positives = 396/677 (58%), Gaps = 31/677 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG K    LSK +   + N     DLL Y+P  ++DR     I+E++ +   V I G I
Sbjct: 14  GVGPKRKEILSKELGINSYN-----DLLEYYPYKYVDRSRIYTINELTSDMPFVQIKGKI 68

Query: 77  SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
                F++  R+   +   +DGTG   +++F R T+ +   +   ++  + GK      R
Sbjct: 69  LSFDEFEMGPRKKRIVAHFSDGTGVCDIVWF-RATQFVYKNYKVQQEYIIFGKPTLFNGR 127

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLP--------TGLSVDLFKKIIVEALSRLPVLPE 187
               HP     +  +++   ++  Y           T  S++   K ++E LS+ P+ PE
Sbjct: 128 YQFAHPDIDDASKLELSQMGMQPYYITTERMKKMGLTSRSMEKLTKTLIEKLSQTPI-PE 186

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM---- 243
            +   L  +    S  +AF+ IH P+ A +   T  ARERL ++EL   Q+ +L      
Sbjct: 187 TLPDSLTHRLHLISRQQAFHWIHYPQNAHE---TQQARERLKFEELFYVQLNILRYVSDR 243

Query: 244 RKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           RK ++  I   I   G+I      +N+PF  T +Q+  IK+I +DM+   +M R+LQGDV
Sbjct: 244 RKNYRGYIFGHI---GQIFNDFYSQNLPFPLTNAQKRVIKEIRRDMNSGKQMNRLLQGDV 300

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVAL++M  A++ G QA +MAP  ILA+QH + IK +     I VE++TG +   
Sbjct: 301 GSGKTLVALMSMLIALDNGYQACMMAPTEILAEQHLQTIKDFLHGMNIRVELLTGIVKGK 360

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-AP 421
            R++ LE +A G+  I++GTHA+ +D +Q+ +L   ++DEQHRFGV QR KL  K++  P
Sbjct: 361 KRQQILEDLASGKIQILVGTHAVIEDHVQFARLGYAVIDEQHRFGVAQRAKLWGKSSFPP 420

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H+L+MTATPIPRTL +T  GD+D+S I E P GRKP++T+    +++  +   ++  + E
Sbjct: 421 HILVMTATPIPRTLAMTIYGDLDVSIIDELPPGRKPVQTIHKYDSQMTSLYSGIRQQIHE 480

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++ Y + P I+E ++S+ +++ E + +L E F    ++ +HG+M   +KE  M  F  G
Sbjct: 481 GRQVYIVFPLIKESEKSDLKNLEEGYEALREVFPEFRLSKVHGKMKPAEKEEEMQKFVKG 540

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ +  L
Sbjct: 541 DTQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVTNQKL 600

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIA 659
           SK +  R+ ++ +T DGF IAE DLK R  G++ G +QSG+   L IA       ++++A
Sbjct: 601 SKETRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIANIAQDGQIIQLA 660

Query: 660 RKDAKHILTQDPDLTSV 676
           R +A+ I+  DP+   +
Sbjct: 661 RDEAQKIIDNDPNCEKI 677


>gi|221214464|ref|ZP_03587435.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD1]
 gi|221165721|gb|EED98196.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD1]
          Length = 791

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 246/660 (37%), Positives = 365/660 (55%), Gaps = 25/660 (3%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I ++    I    G +  +     + RR   + + D  
Sbjct: 118 TRSIDLVLHLPMRYEDETTLTPIRDLLPGGIAQTEGVVIDNE-VAYRPRRQLVVKIRDDD 176

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157
           GE  +L F             G+++ V G ++     + MVHP      + D   P ++ 
Sbjct: 177 GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVLT 235

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            VY    G+S    +K I  AL R P+   LP  IE+D L+    P++A+A  I+H+P  
Sbjct: 236 PVYPSTAGVSQAYLRKAIENALERTPLPELLPPEIERDYLKPLGVPTLADAVRILHHPGV 295

Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG--IPINVE---GKIAQKI 265
             D     + + PA  R+ ++ELLA Q++L    ++ +      +P         +  ++
Sbjct: 296 DSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRTARDTDALTTRL 355

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF  T +Q   + +I  D++  + M R+LQGDVGSGKT+VA +A A A++AG QA 
Sbjct: 356 YAALPFRLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAA 415

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTHA+
Sbjct: 416 LMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAI 475

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLV 436
            QD++++ +L LVIVDEQHRFGV QRL L  KA           PH L+M+ATPIPRTL 
Sbjct: 476 IQDTVEFARLGLVIVDEQHRFGVGQRLALRAKAANAADCAQGFQPHQLMMSATPIPRTLA 535

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +T   D+D+S I E P GR P+ T ++   R DEVI R++     G++ YW+CP IEE +
Sbjct: 536 MTYYADLDVSTIDELPPGRTPVLTRVVGDARRDEVIARVREAALTGRQVYWVCPLIEESE 595

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
               ++ VE + +L        + ++HGR+S  DK +VMD+F     +LL+ATTVIEVG+
Sbjct: 596 TLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAFTRNEVQLLVATTVIEVGV 655

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL  ++ T 
Sbjct: 656 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYSGPLSIAGRERLKTMRETT 715

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           DGF IA  DL+ R  GE LG +QSG      A  E    L++ AR  A  ++   PD+ +
Sbjct: 716 DGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPARDAAARLIAAYPDVVT 775


>gi|114331545|ref|YP_747767.1| ATP-dependent DNA helicase RecG [Nitrosomonas eutropha C91]
 gi|114308559|gb|ABI59802.1| ATP-dependent DNA helicase RecG [Nitrosomonas eutropha C91]
          Length = 685

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 238/642 (37%), Positives = 364/642 (56%), Gaps = 14/642 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ + P  + D      ISE +    + I G I++     +  RR     ++D +G + 
Sbjct: 27  DLVLHLPLRYEDETQLSSISEAAPGNTIQIEGVITEQEVL-ISPRRQLVYRVSDDSGVLY 85

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
           L F       +   +  G ++ + G+++   + + MVHP              +  VY +
Sbjct: 86  LRFLNFYASQI-TAWSPGTRLRILGEVRAGFHGMEMVHPKCRVVRDNMALATALTPVYPV 144

Query: 163 PTGLSVDLFKKIIVEALSRL---PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
             GL      ++I +A  RL     L E + + +L     P+  E+ +++H P      E
Sbjct: 145 TAGLPQRTLIRLITQAFERLRRKQFLREILPETILSACPLPAFEESLSLLHCPPSDISME 204

Query: 220 W----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
                + PA +R+ +DELLA QI+L     Q + +    ++ +  + Q +L  +PFS T+
Sbjct: 205 SLQQRSHPAWQRIKFDELLAQQISLRCHYHQRRNQQAPTLSQQVSLQQVLLGVLPFSLTE 264

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q   + +I  D++Q   M R+LQGDVGSGKT+VA +A   A+  G Q  +MAP  ILA+
Sbjct: 265 AQHKVVAEISTDLAQPYPMQRLLQGDVGSGKTVVAALAALQAIGNGYQVAVMAPTEILAE 324

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QH+  +  +     I V  ++G+  ++ R + L + A G   +IIGTHALFQ+++Q+ +L
Sbjct: 325 QHFRKLSGWLVPLGIEVGWLSGSQKKSLRSQELAKTASGATMLIIGTHALFQEAVQFKQL 384

Query: 396 ILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
            LVI+DEQHRFGV QRL L  K    ++ PH L+M+ATPIPRTL ++   D+D+S I + 
Sbjct: 385 GLVIIDEQHRFGVGQRLALRMKREDESSLPHQLMMSATPIPRTLSMSYFADLDVSVINQL 444

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P GR P+ T +I  NR +E+I R++     G++AYW+CP IEE +    ++ VE + +L 
Sbjct: 445 PPGRLPVATRLIDNNRREEIIARIREACLAGRQAYWVCPLIEESEVLQLKTAVETYETLS 504

Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           + F   SIA+IHGR+   +K ++M  F  G  +LL+ATTVIEVG+DV +AS+++IE+AE 
Sbjct: 505 QIFPELSIALIHGRLGSDEKSAIMAKFSQGAVQLLVATTVIEVGVDVPNASLMVIEHAER 564

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
            GL+QLHQLRGR+GRG     CIL+Y  PLS  +  RL ++    DGF IA +DL  R  
Sbjct: 565 MGLSQLHQLRGRIGRGSATGICILMYQRPLSVVARKRLQIIFEHNDGFEIARQDLLLRGP 624

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           GE LG +QSG+P    A  E    LLE+AR  A+ IL   P+
Sbjct: 625 GEFLGTRQSGVPLLRFADLEEDIDLLEMARNVAEEILRDYPN 666


>gi|303228363|ref|ZP_07315197.1| ATP-dependent DNA helicase RecG [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516976|gb|EFL58884.1| ATP-dependent DNA helicase RecG [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 680

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 236/630 (37%), Positives = 363/630 (57%), Gaps = 23/630 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP----YKILLNDGT 98
           +LL Y P S+ DR    KI  I E       G +    S   ++ RP     ++++ DGT
Sbjct: 29  NLLAYFPRSYEDRR---KIYSIKELETGITAGVVGTVVSITEKRPRPRLSILEVIITDGT 85

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
           G + ++ F +  +  KN + +G+++   GK +     + M  P         +    I  
Sbjct: 86  GPMKIVLFNQGYK--KNFYKKGQRLYAYGKAEFQYGSMQMNSPQIENLGPDAMPDTGIVP 143

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           +Y L  G+S  + +  I         + E +  +++   +     +AF  +H P  ++  
Sbjct: 144 IYPLVDGVSQYVVRASIRNWFEAHHTMDEILPPEIMNYHASMKRYDAFKEMHFPSSSERH 203

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           E    AR +LAY+EL   Q  L L+R + +  +G  +  +G + ++   N+PF  T  QE
Sbjct: 204 E---KARYQLAYEELFIMQSGLALLRNKEQCHVGPKMEPDGTLMEQYRTNLPFQLTGDQE 260

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A+ +I QDM  +  M R+LQGDVGSGKT+VA +++  AVE G QAVIMAP  ILA QH+
Sbjct: 261 RAVTEISQDMQDERPMQRLLQGDVGSGKTVVATLSLVKAVENGYQAVIMAPTEILATQHF 320

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I ++ +N  I + ++TG+ P+  + +  E +A+G   +IIGTHAL QD +Q+  L LV
Sbjct: 321 EGITEFCKNLPINIALLTGSTPKKEKDRIYEELANGTIQLIIGTHALIQDKVQFKNLGLV 380

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DEQHRFGV QR  L  K   PHVL+MTATPIPRT+ L+  GD+ +S I E P GRKP+
Sbjct: 381 IIDEQHRFGVNQRAALQHKGVYPHVLIMTATPIPRTMTLSVYGDLAVSLIKEMPPGRKPV 440

Query: 459 KTVIIPINRIDEVIERLKVV----LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           KT ++         ERL+V     ++ G + Y +CP +EE ++ + ++  E F  L ++F
Sbjct: 441 KTYVVD----SSYKERLRVFFGKEMAAGHQVYVVCPLVEESEKLDLQAAEELFLELKDYF 496

Query: 515 TSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
             S  + ++HGRM+  +K+ VM +F +G  +LL++TTVIEVG++V +A+I+ IE AE FG
Sbjct: 497 YKSFEVGLVHGRMNPKEKDEVMQAFHDGRIQLLVSTTVIEVGVNVPNATIMCIEGAERFG 556

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+QLHQLRGRVGRG+  + CIL+        S  RL ++++T+DGF +AE+DL  R  G+
Sbjct: 557 LSQLHQLRGRVGRGDIQAYCILVSDSK-GDVSQERLRLMESTQDGFELAEQDLLLRGSGQ 615

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           + G+ QSG+P   +A       +L  AR D
Sbjct: 616 LFGLAQSGLPDLRVANIIKDIDILVAARND 645


>gi|260892053|ref|YP_003238150.1| ATP-dependent DNA helicase RecG [Ammonifex degensii KC4]
 gi|260864194|gb|ACX51300.1| ATP-dependent DNA helicase RecG [Ammonifex degensii KC4]
          Length = 685

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 242/676 (35%), Positives = 380/676 (56%), Gaps = 18/676 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           P+   +GVG + + +LS++ IN          DLL++ P  + DR +   +  + +   V
Sbjct: 8   PVQYLKGVGPQRARWLSRLGINTVG-------DLLYHLPRRYEDRTFSRPLQTLVDGETV 60

Query: 71  TITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           T  G + +   S      +  +  L    G    ++F +    L  +   G K+TVTGK+
Sbjct: 61  TARGEVLTVEESTARSGLKIIRAALRHPEGTFYAVWFNQT--YLTQILKPGVKVTVTGKV 118

Query: 130 KKLKNRI-IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++L   I I V    I  + + +N   I  +Y     L     + +I  AL         
Sbjct: 119 RRLLGFIEIQVADFEIGEDEEGINSGRIVPIYPSTEKLPQRTLRSLIFRALEENAAELPE 178

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +    L ++ F + A+A   +H P      E    AR+RL  +EL   Q+AL   R+   
Sbjct: 179 LLPPHLLRQGFFTRAQALREVHFP---STLEKAEEARKRLVLEELFLLQLALGQRRRHLA 235

Query: 249 K-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +   P   +G + Q+ L ++PF+ T +QE A ++I +DM     M R+LQGDVG+GKT
Sbjct: 236 SAQKPYPCRPDGPLVQQFLASLPFTLTPAQERAWREISRDMESPRPMHRLLQGDVGAGKT 295

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A+  AVE G Q  +MAP  ILA+QH+  +    +   I V ++TGN+ +  R + 
Sbjct: 296 VVAALALVKAVENGLQGALMAPTEILAEQHFLNLHPLLEKIGIKVGLLTGNLKKELRWRQ 355

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           +  IA G   ++IGTH L Q+ + +++L LV++DEQHRFGV+QR  L +K  AP VL+MT
Sbjct: 356 IAAIARGDIDVVIGTHTLIQEEVSFHRLGLVVIDEQHRFGVRQRTILRRKGEAPDVLVMT 415

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL LT  GD+D+S I   P GR+P+KT+ I  + +  V   ++   ++G +A++
Sbjct: 416 ATPIPRTLALTLYGDLDLSVIDSLPPGRQPVKTIWIKPSALPRVYNFIRQEAAQGNQAFF 475

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +CP IEE +E N ++  +    L + F    I ++HGR+   +KE VM +F++G  KLL+
Sbjct: 476 VCPLIEESEELNAQAASKLAEELKKFFPEFQIGLLHGRLKLEEKERVMAAFRSGEIKLLV 535

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
            T+V+EVG+DV +A++++I +A+ FGLAQLHQLRGRVGR ++ S CIL+    ++  +  
Sbjct: 536 TTSVVEVGVDVPNATVMVIYDADRFGLAQLHQLRGRVGRSDKPSYCILVAD-KVTPEAQA 594

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL    N  DGF +AEEDL+ R  GE  G +QSG+P+  +A       LL +AR++A   
Sbjct: 595 RLKAFTNLRDGFALAEEDLRIRGPGEFFGTRQSGLPELKVADLLRDHQLLPLAREEAWRF 654

Query: 667 LTQDPDLTSVRGQSIR 682
           L +DP L+S  G+ +R
Sbjct: 655 LEKDPSLSSPLGRILR 670


>gi|206889688|ref|YP_002248538.1| ATP-dependent DNA helicase RecG [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741626|gb|ACI20683.1| ATP-dependent DNA helicase RecG [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 690

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 260/671 (38%), Positives = 380/671 (56%), Gaps = 20/671 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+   +GVG K +  L KI       ET   + L+Y PS + DR  +  I EI    I+T
Sbjct: 9   PIQYLKGVGPKKANLLKKI-----GIET-VKEALYYLPSQYEDRRNKKSIFEIKPGEIIT 62

Query: 72  ITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
             G + Q +  + +      + +++DGTG +   +F +          +  K+    +I 
Sbjct: 63  AEGSVVQINEIRTKTNLSIIEAIISDGTGFLKAKWFNQNYLKKILKEKKKLKLFGKVQID 122

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLPEW 188
              N + +++P Y +   + +     I  +Y L  GLS    + I+  A+   +P + E 
Sbjct: 123 YRGNYLEILNPEYELVEQTLNSQTQEIVPIYRLTEGLSQKQMQSIMQTAVEFAIPHIEEH 182

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244
           + ++L+ K   P++ EA   +H P    D     E TS   +R+ +DEL   Q+ +LL++
Sbjct: 183 LPENLINKLKLPTLKEAIKFVHLPPNNADIKLLNEKTSDFHKRIIFDELFFLQLGILLIK 242

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +    E GI  N EG + +K L N+PF  T +Q+  I +IL+DM +   M R+LQGDVGS
Sbjct: 243 QNRICEKGISFNPEGDLLKKFLENLPFKLTSAQQKVINEILEDMKKPIPMNRLLQGDVGS 302

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA+ AM AA+E G QA +MAP  ILA+QHY  I    +   I   I T +      
Sbjct: 303 GKTVVAVAAMLAAIECGYQAALMAPTEILAEQHYLNISSLLKGLPINTLIYTSSY----- 357

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
            K    I  G  ++IIGTHAL Q+ I +  L +V++DEQHRFGV QR  L +K   P  L
Sbjct: 358 NKHSNLICSGAVNLIIGTHALIQEDIHFKNLGIVVIDEQHRFGVIQRAMLKKKGLNPDTL 417

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRT+ LT  GD+D S + E PAGRKPI T +I       + + +   +S G +
Sbjct: 418 VMTATPIPRTMALTVYGDLDYSILDELPAGRKPILTKVIEPENKKIIYKMIAEEVSSGGQ 477

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543
            Y + P IEE +  + +S  + +  L + F    +A+IHG+MS   +E +M  F+NG   
Sbjct: 478 VYVVYPLIEESEAMDLKSATQGYEGLKKLFPQYKVALIHGKMSAKQREEIMKEFRNGDIH 537

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ATTVIEVG+DV +A+++II +AE FGLAQLHQLRGRVGRG   S CILL +  L++ 
Sbjct: 538 ILVATTVIEVGVDVPNATLMIIIHAERFGLAQLHQLRGRVGRGLRPSKCILLPY-KLTEE 596

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL  + N  DGF IAEED+K R  GE+ G+KQSGMP   +A      SLLEIAR +A
Sbjct: 597 AKLRLRAIVNYSDGFKIAEEDMKIRGPGELFGVKQSGMPDLKVADLIKDQSLLEIARNEA 656

Query: 664 KHILTQDPDLT 674
           + +L +D +L+
Sbjct: 657 EQLLQEDKNLS 667


>gi|312795168|ref|YP_004028090.1| ATP-dependent DNA helicase recG [Burkholderia rhizoxinica HKI 454]
 gi|312166943|emb|CBW73946.1| ATP-dependent DNA helicase recG (EC 3.6.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 753

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 241/654 (36%), Positives = 359/654 (54%), Gaps = 24/654 (3%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           R IDL+ + P  + D      I ++       + G +  +     + RR   + L D  G
Sbjct: 82  RDIDLVLHLPMRYEDETTLTPIGQLLPGMTAQVQGEVVDNE-IAYRPRRQMLVRLRDEHG 140

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIEA 158
           ++ +L F             G ++ V G ++     + MVHP Y      D   P  +  
Sbjct: 141 DVLMLRFLNFWGSQARQLASGARLRVRGDVRGGFFGMEMVHPAYRVVED-DTPLPDALTP 199

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
           VYS   G+S    ++ I  AL R P+   LP  I    L     PS+A+A   +H+PR  
Sbjct: 200 VYSSTAGVSQAYLRRAIDSALQRTPLPELLPPQIADAFLAPLGVPSLADAVRTLHHPRAD 259

Query: 216 KD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-----EGKIAQKIL 266
            D     E T PA  R+ ++ELLA Q++L     + +      +          +  ++ 
Sbjct: 260 ADEAALMERTHPAWLRIKFEELLAQQLSLKRAHDERRLRAAPAMARRPAADRDALVTRLH 319

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             +PF  T +Q+ A + I  D++  + M R+LQGDVGSGKT+VA +A A A++AG QA +
Sbjct: 320 AALPFQLTGAQQRASEQIAADLAAAHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAAL 379

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  +LA+QH   ++ + +   +    + G++    +R ALE +A G A ++IGTHA+ 
Sbjct: 380 MAPTELLAEQHARKLRGWLEPLGVRTAWLAGSLKARDKRAALEAVASGDAPLVIGTHAMI 439

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--------PHVLLMTATPIPRTLVLT 438
           Q+++++ +L LVIVDEQHRFGV+QRL L  KA A        PH L+M+ATPIPRTL +T
Sbjct: 440 QEAVKFARLGLVIVDEQHRFGVEQRLALRAKAQAEAAVSGFQPHQLMMSATPIPRTLAMT 499

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
              D+D+S I E P GR P+ T ++   R DEVI R++     G++ YW+CP IEE +  
Sbjct: 500 YYADLDVSTIDELPPGRTPVLTKLVSDARRDEVIARVREAALAGRQVYWVCPLIEESEAL 559

Query: 499 NFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             ++ V+ + +L        + ++HGR++  DK  VM  F      LL+ATTVIEVG+DV
Sbjct: 560 QLQTAVDTYETLVAALPQLQVGLVHGRLAAADKADVMARFTRNEIHLLVATTVIEVGVDV 619

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            +AS++++E+AE FGLAQLHQLRGRVGRG + S C+L+Y  PLS  +  RL  ++ T DG
Sbjct: 620 PNASLMVVEHAERFGLAQLHQLRGRVGRGSQSSVCLLMYASPLSLAARERLRTMRETTDG 679

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           F IA  DL+ R  GE LG +QSG      A  E    L+E AR+ A+ +L + P
Sbjct: 680 FEIARRDLEIRGPGEFLGARQSGAAMLRFADIEQDAWLIEPARRAAERLLGEYP 733


>gi|299065737|emb|CBJ36913.1| ATP-dependent DNA helicase [Ralstonia solanacearum CMR15]
          Length = 730

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 248/666 (37%), Positives = 369/666 (55%), Gaps = 42/666 (6%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ------HSSFQLQKRRPYKIL 93
           R +DL+ + P  + D      +  I+E      TG+ +Q       +    + RR   + 
Sbjct: 55  RDVDLVLHLPMRYEDET---ALLTIAEAVARANTGWAAQVDGVVTRNEVAFRPRRQLVVH 111

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           + D +GE+ L F       +K +  EG ++ V G+++       MVHP  +   + D   
Sbjct: 112 IADDSGELVLRFLNFYGSQVKQMA-EGARLRVRGEVRGGFFGAEMVHP-AVRAVAPDEPL 169

Query: 154 P-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNII 209
           P  +  VY    G++    +K I+ AL R P+   LP+ + +  L      + AEA  ++
Sbjct: 170 PDRLTPVYPSTAGVAQAYLRKAILNALGRTPLPETLPDSLLRGPLASLKLMAPAEAVRLL 229

Query: 210 HNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPI----NVEGK 260
           H P    D     E T PA  R+ +DELLA Q++L   R Q  +     P+      +G 
Sbjct: 230 HQPTPDVDEYSLVERTHPAWLRIKFDELLAQQLSL--KRAQAARRTRSAPVLRAGGADGL 287

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +A + +  +PF  T +Q    ++I  D+++   M R+LQGDVGSGKT++A +A   A++A
Sbjct: 288 LA-RFMAALPFKLTGAQARVWEEIRVDLARPYPMQRLLQGDVGSGKTVIAALAACQAIDA 346

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G QA +MAP  +LA+QHY  +  +     + +  + G++ +  + +A  R+A G A ++I
Sbjct: 347 GRQAALMAPTELLAEQHYRKLSAWLAPLGVDIVWLAGSLKRKQKDEAAARVAAGTAQLVI 406

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------------PHVLLMTA 428
           GTHAL QD++ + +L L +VDEQHRFGV QRL L  KA              PH L+M+A
Sbjct: 407 GTHALIQDTVTFARLGLAVVDEQHRFGVAQRLALRGKAGGTDTPIAETAQLVPHQLMMSA 466

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T   D+D+S I E P GR P+ T ++   R DEVIER+     EG++ YW+
Sbjct: 467 TPIPRTLAMTYYADLDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYWV 526

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           CP IEE +    ++ VE F +L +      + ++HGR+   DK +VM +F  G   +L+A
Sbjct: 527 CPLIEESEALQLQTAVETFETLSQSLAGLKVGLVHGRLPSADKAAVMSAFAGGELHVLVA 586

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S CILLY  PLS  +  R
Sbjct: 587 TTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQAPLSPTAKQR 646

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHI 666
           L  ++ T DGF IA  DL  R  GE LG +QSG      A    HD+ ++E A+  A+ +
Sbjct: 647 LQTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLN-HDAWMVEFAQGAAEQM 705

Query: 667 LTQDPD 672
           L + PD
Sbjct: 706 LARFPD 711


>gi|82702013|ref|YP_411579.1| ATP-dependent DNA helicase RecG [Nitrosospira multiformis ATCC
           25196]
 gi|82410078|gb|ABB74187.1| ATP-dependent DNA helicase RecG [Nitrosospira multiformis ATCC
           25196]
          Length = 692

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/651 (36%), Positives = 365/651 (56%), Gaps = 27/651 (4%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITL 103
           L+ + P  + D  +   IS++  +R V + G I + S    + RR     + DGTG + +
Sbjct: 28  LILHLPFRYEDETHLYPISDVPADRTVQVEGTIIR-SEVMYRPRRQLVCQVEDGTGVLFM 86

Query: 104 LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VY 160
            F       +K  +  G ++ + G+ +     + MVHP          N PL +A   +Y
Sbjct: 87  RFLNFYGSQIK-AYSVGTRVRLLGEARPGFFGVEMVHPKCRILRG---NEPLPDALTPIY 142

Query: 161 SLPTGLSVDLFKKIIVEAL------SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP-- 212
               GL  +  +K+I   L      ++   L E + + + ++       ++   +H P  
Sbjct: 143 PSTAGLPSEALRKLISRVLQTGEGGNQEGTLCETLPESIRKRCQLQGFKDSVLFLHQPPP 202

Query: 213 --RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
               A   E T PA +R+ +DELLA Q+++ +  +Q +      +  +  + + +L+ +P
Sbjct: 203 NASPALLRERTHPAWQRIKFDELLAQQLSMRVHYQQRRNGSAPVLIAKNDLTRALLKLLP 262

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T++Q+ A  +I +D+++ + M R+LQGDVGSGKT+VA +A+  ++E   QA +MAP 
Sbjct: 263 FDLTQAQKKAFAEISRDLTEPHPMQRLLQGDVGSGKTIVATLAVLQSIENNFQAALMAPT 322

Query: 331 GILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            ILA+QHY     ++    +   + +  + GN  +  R   L  IA G A + IGTHALF
Sbjct: 323 EILAEQHYRKLSTWLAPLLEPRGLRIAWLGGNQKKKERETTLADIAAGNALLAIGTHALF 382

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGD 442
           Q+ +++ +L LV++DEQHRFGV QRL L +K       PH L+M+ATPIPRTL ++   D
Sbjct: 383 QNQVEFDRLGLVVIDEQHRFGVHQRLALREKGAGAYAMPHQLMMSATPIPRTLSMSYYAD 442

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +D+S I E P GR P+ T ++   R DEV  R++    EGK+AYW+CP I+E +    ++
Sbjct: 443 LDVSVIDEMPPGRAPVVTKLVADARRDEVTARVREACREGKQAYWVCPLIQESEALQLKT 502

Query: 503 VVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            +E    L   F    I ++HGR+S  +K  VM++F  G   LL+ATTVIEVG+DV +AS
Sbjct: 503 ALETHQGLTGTFPELRIGLVHGRLSFQEKSDVMEAFARGEIHLLVATTVIEVGVDVPNAS 562

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
           +++IE+AE  GLAQLHQLRGR+GRG   S CIL+Y PPLS N+  RL ++    DGF IA
Sbjct: 563 LMVIEHAERMGLAQLHQLRGRIGRGAAGSVCILMYQPPLSPNARERLKIIFENTDGFEIA 622

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            +DL+ R  GE LG +QSG+P    A  E    LL+ AR  A  +L   P+
Sbjct: 623 RQDLQLRGPGEFLGARQSGLPMLRFADLERDKDLLDTARTIAVELLRDYPE 673


>gi|282855835|ref|ZP_06265137.1| ATP-dependent DNA helicase RecG [Pyramidobacter piscolens W5455]
 gi|282586349|gb|EFB91615.1| ATP-dependent DNA helicase RecG [Pyramidobacter piscolens W5455]
          Length = 694

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/675 (35%), Positives = 386/675 (57%), Gaps = 31/675 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS------ 65
           P++  RG+G+  +L L ++   G A      DL+++ P  + DR     I +++      
Sbjct: 11  PVTAIRGIGEAKALLLQRL---GIATAE---DLVYFFPRRYEDRRQVVTIQDLAPGGPPQ 64

Query: 66  --EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
               R+V+I   +++ S+ ++Q  R   + L+DG      L+F R    L  +  EG ++
Sbjct: 65  AFRARVVSIEQRVAR-SNRRMQITR---VCLSDGKNVAWALWFNRWN--LSRILREGMEL 118

Query: 124 TVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
            + G ++  +    +++P + I   S   +   I  VYS   GL+    +++I   L  L
Sbjct: 119 ALYGSLEPRRPVPELLNPEFEILDGSDPRSVGRIVPVYSATAGLNEKWLRRVIDTVLETL 178

Query: 183 -PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P + + +   +++K  F   A A   +H P     F     AR+RL ++E    Q+ L 
Sbjct: 179 APTIADILPPPIVEKFHFIDAASAVRQMHQPTDEALFR---AARQRLVFEEFFLLQVGLA 235

Query: 242 LMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L  ++   E   P +  +  + +K L  +PF  T  Q    ++I  DM +   M R+LQG
Sbjct: 236 LRHRRGCLEKKAPALAGQADLTRKFLAELPFELTDDQRRVAQEIADDMRRSVPMNRLLQG 295

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA++A+  A+++G QA +MAP  +LAQQH   + ++     + V ++TG + 
Sbjct: 296 DVGSGKTVVAVMALLQALDSGVQAAMMAPTAVLAQQHALTLNRWLAPLGVEVGLLTGGVA 355

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--A 418
            A ++K  E+++ G   +++GTHAL Q+++ + +L L+++DEQHRFGV QR  L  K  A
Sbjct: 356 PAEKKKIHEQLSDGTLRVVVGTHALIQEAVSFKRLGLIVIDEQHRFGVLQRKALNSKAGA 415

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            APH L+MTATPIPRTL L+  GD+ +S I + P+GR+PIK+V I  NR+ +++  L+  
Sbjct: 416 EAPHTLVMTATPIPRTLALSVYGDLAVSTIRQLPSGRQPIKSVWIGDNRLPKMLRFLEGE 475

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           ++ G++ YW+CP IEE +  +   +  RF  L   F +  +A++HGRM + +K +VM  F
Sbjct: 476 MAAGRQIYWVCPLIEESENFDAAPLESRFEKLRREFPNRRLAMLHGRMGEKEKNAVMTEF 535

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G   LL +TTVIEVG+DV +A+++++ENAE FGL+QLHQLRGRVGRG   S CI LY 
Sbjct: 536 SAGHIDLLASTTVIEVGVDVPNATVMVVENAERFGLSQLHQLRGRVGRGPTKSWCI-LYA 594

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            P +  +  RL    +  DGF IAE D++ R  GE  G++Q G+  F +A      +++E
Sbjct: 595 DPKNSEAEHRLDQFCSLSDGFAIAEADMQLRGPGEFCGVRQHGLTDFRVADLIRDGAVME 654

Query: 658 IARKDAKHILTQ-DP 671
           +AR++A  ++ Q DP
Sbjct: 655 VARQEAFALIAQGDP 669


>gi|164688647|ref|ZP_02212675.1| hypothetical protein CLOBAR_02292 [Clostridium bartlettii DSM
           16795]
 gi|164603060|gb|EDQ96525.1| hypothetical protein CLOBAR_02292 [Clostridium bartlettii DSM
           16795]
          Length = 686

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 242/674 (35%), Positives = 390/674 (57%), Gaps = 20/674 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +N L   +   +G+G K +  L+K+      N     DLL+Y P S+ DR    KI ++ 
Sbjct: 1   MNSLDKNIQFVKGIGPKKASKLNKL------NIFTIKDLLYYFPRSYEDRSNIKKIWQLE 54

Query: 66  EERIVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            +      G IS+  S + + + +  K  L D TG + ++FF +  + L  VF +G  + 
Sbjct: 55  HDEKACTKGIISEVKSHEAKNKIKVTKFTLRDETGFLNVVFFNQ--DYLTKVFKKGDSVI 112

Query: 125 VTGKIKKLKNRIIMVHPHYI-FHNSQDVNFPLIEAVYSLPTGLS-VDLFKKIIVEALSRL 182
           V GKIK+    + M  P    F N+Q     LI  +Y L  G++  D+   I     +  
Sbjct: 113 VYGKIKREGGFLEMNSPQIEHFTNAQTSTGKLI-PIYPLTYGVTNKDIINTIKNIYTNEK 171

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E++ KD++ K    SI  A   +H P+   D +    A  R+ ++E L  QI L  
Sbjct: 172 VSIQEYLPKDIINKYKLCSIDFAVKNLHMPQ---DKQSLKIALYRMIFEEFLILQIGLFY 228

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +       GI    + K+   I++++PF+ T +Q  A+ +++ DM  +N M R++QGDV
Sbjct: 229 FKSGIDNSEGIKFEKKEKL-NDIIKSLPFNLTNAQSRALNEVIDDMVSENMMNRLVQGDV 287

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA++ +A +V  G Q  +MAP  ILA+QHYE + +      I ++++ G++ + 
Sbjct: 288 GSGKTIVAVLVLALSVLNGYQGALMAPTEILARQHYESLTQTLAPFDINIDLLVGSLTKK 347

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            + K LE+I + +  I+IGTHAL +D++++  L +V+ DEQHRFGV+QR KL+ K   P 
Sbjct: 348 QKEKVLEKIKNHETDILIGTHALIEDNVEFDNLGVVVTDEQHRFGVRQRAKLSTKGNNPD 407

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSE 481
           +L+MTATPIPRTL L   GD+DIS I E P GR+PI T      + D +    ++  + +
Sbjct: 408 ILVMTATPIPRTLALILYGDLDISIIDELPPGRQPIDTRAFESKKRDFIYSNFVRDEIEK 467

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKN 539
           G++ Y +CP +EE +    ++  +  + L E + S  ++ ++HG+M    K+ +M+ FKN
Sbjct: 468 GRQVYIVCPLVEESEAIEAKAAEDLRDELKEKYFSDLNVEVLHGKMKPSLKDKIMEDFKN 527

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L++TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG   S CIL+Y   
Sbjct: 528 NKIQILVSTTVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGSHKSHCILIYSSK 587

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +     R+ +++ T DGF I+E+DL+ R  GE  G +Q G+P+  +A    H  +L++A
Sbjct: 588 -TNVCKERMEIMEETNDGFKISEKDLEIRGPGEFFGTRQHGIPELKVANIFKHIKILKLA 646

Query: 660 RKDAKHILTQDPDL 673
           ++++K IL QD +L
Sbjct: 647 QEESKFILKQDRNL 660


>gi|78222986|ref|YP_384733.1| ATP-dependent DNA helicase RecG [Geobacter metallireducens GS-15]
 gi|78194241|gb|ABB32008.1| ATP-dependent DNA helicase RecG [Geobacter metallireducens GS-15]
          Length = 767

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 248/699 (35%), Positives = 383/699 (54%), Gaps = 32/699 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG K +  L      G        D L+  P+ + DR     I+ +    
Sbjct: 65  LETPIQFIKGVGPKLAETL------GKKGIATVEDALYLLPNRYEDRRQVVPIARLCPGV 118

Query: 69  IVTITGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
               +G +        +  RR +++++ D +G I+  +F      LK  + EGR+   TG
Sbjct: 119 TSVFSGEVITADVVSTKGGRRFFEVVVRDASGTISFKWFNFNPAFLKKTWKEGRRGIFTG 178

Query: 128 KIKKLKNRIIMVHPHYIFHNSQD----------VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
            + +   +  + HP   +    +          V+F  +  VY L  GL     +K++  
Sbjct: 179 LVSQFGLQREVHHPDAEWLAEGETVASVMARDPVSFGRVVPVYPLTEGLHQKTLRKVMKG 238

Query: 178 ALSRLPVLPE-WIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDE 232
            + +     E  +  ++  ++    +++A   +H P    D     E   PA   L +DE
Sbjct: 239 VVDQYASCVESALPLEVAGRQGLLPLSDALRRVHFPDSDADPRGLEEGKDPANRTLVFDE 298

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
               ++ L + ++    E GI   V     + +L+ +PFS T +Q   + +I +DM   +
Sbjct: 299 FFFLELGLAMKKRGVTLESGIAFTVSHTYTKPLLKLLPFSLTGAQRRVLAEIKEDMMAPH 358

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++QGDVG GKTLVAL+A   AVE G Q  IMAP  ILA+QHY  I ++     + V
Sbjct: 359 PMHRLVQGDVGCGKTLVALMAALVAVENGYQVAIMAPTEILAEQHYLNIHRWCDELGVSV 418

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++T ++    ++ ALER+A G+A I+IGTHA+ QD +++++L L IVDEQHRFGV QR 
Sbjct: 419 TLVTSSLKGKAKKDALERVAGGEAQIVIGTHAVIQDKVEFHRLGLGIVDEQHRFGVLQRG 478

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L +K   P +L+MTATPIPRTL +T  GD+ +S I E P GR PI+T I   +R  +V 
Sbjct: 479 LLRKKGENPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPIETRICFESRRKQVY 538

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------AIIHGRMS 526
             ++  +++G +AY I P +EE ++S+ ++  +    + EH  + I       I+HGRM 
Sbjct: 539 GIIRDEVTKGHQAYVIYPLVEESEKSDLKAATQ----MAEHLANDIFPELRLGILHGRMK 594

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +KE+VM SFK     +L+ATTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRVGRG
Sbjct: 595 PEEKEAVMRSFKAREIDILVATTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVGRG 654

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            E S CIL+    LS+++  RL V+++T DGF IAE DL+ R  G+ LG +Q+G+P F +
Sbjct: 655 SEKSRCILMAGERLSEDAEKRLRVMESTTDGFRIAEADLEIRGPGDFLGTRQAGIPDFRV 714

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           A       +LE AR++A  +   DP+L   R   +R  L
Sbjct: 715 ANILRDGRILEEARQEAFAVAEVDPELRLPRHDKLRTEL 753


>gi|83747287|ref|ZP_00944329.1| ATP-dependent DNA helicase recG [Ralstonia solanacearum UW551]
 gi|83726111|gb|EAP73247.1| ATP-dependent DNA helicase recG [Ralstonia solanacearum UW551]
          Length = 730

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 249/665 (37%), Positives = 371/665 (55%), Gaps = 44/665 (6%)

Query: 42  IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ------HSSFQLQKRRPYKILLN 95
           +DL+ + P  + D      +  I+E      TG+ +Q       +   L+ RR   + + 
Sbjct: 57  VDLVLHLPMRYEDET---TLLTIAEAIARANTGWAAQVEGAVTRNEVALRPRRQLVVHIA 113

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP- 154
           D +GE+ L F       +K +  EG ++ V G+++       MVHP  +   + D   P 
Sbjct: 114 DDSGELVLRFLNFYGSQVKQMA-EGVRLRVRGEVRGGFFGAEMVHP-TVRAVAPDEPLPD 171

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP----SIAEAFNIIH 210
            +  VY    G++    +K I+ AL R P LPE +   L++    P    + AEA  ++H
Sbjct: 172 RLTPVYPSTAGVAQAYLRKAILNALGRTP-LPETLPDSLMRGPLAPLKLMAPAEAVRLLH 230

Query: 211 NPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPI----NVEGKI 261
            P    D     E T PA  R+ +DELLA Q++L   R Q  +     P+      +G +
Sbjct: 231 QPTPDVDEHSLVERTHPAWLRIKFDELLAQQLSL--KRAQAARRTRSAPVLRAGGAQGLL 288

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           A + +  +PF  T +Q    ++I  D+++   M R+LQGDVGSGKT++A +A   A++AG
Sbjct: 289 A-RFMAALPFKLTGAQGRVWEEIRADLARPYPMQRLLQGDVGSGKTVIAALAACQAIDAG 347

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA +MAP  +LA+QHY  +  + +   + +  + G++ +  + +A  R+A G A ++IG
Sbjct: 348 WQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAARVAAGAAQLVIG 407

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------------PHVLLMTAT 429
           THAL QD++ + +L L +VDEQHRFGV QRL L  KA              PH L+M+AT
Sbjct: 408 THALIQDTVTFARLGLAVVDEQHRFGVAQRLALRGKAGGADAPVAETAQPVPHQLMMSAT 467

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL +T   D+D+S I E P GR P+ T ++   R DEVIER+     EG++ YW+C
Sbjct: 468 PIPRTLAMTYYADLDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYWVC 527

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P IEE +    ++ VE F +L +      + ++HGR+   DK +VM +F  G   +L+AT
Sbjct: 528 PLIEESEALQLQTAVETFETLSQSLAGLKVGLVHGRLPSADKAAVMSAFAGGELHVLVAT 587

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S CILLY  PLS  +  RL
Sbjct: 588 TVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQAPLSPTAKQRL 647

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHIL 667
             ++ T DGF IA  DL  R  GE LG +QSG      A    HD+ ++E A+  A+ +L
Sbjct: 648 QTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLN-HDAWMVEFAQGAAEQML 706

Query: 668 TQDPD 672
            + P+
Sbjct: 707 ARFPE 711


>gi|225023458|ref|ZP_03712650.1| hypothetical protein EIKCOROL_00316 [Eikenella corrodens ATCC
           23834]
 gi|224943807|gb|EEG25016.1| hypothetical protein EIKCOROL_00316 [Eikenella corrodens ATCC
           23834]
          Length = 533

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/515 (40%), Positives = 318/515 (61%), Gaps = 6/515 (1%)

Query: 164 TGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS- 222
           +GLS    ++II +AL +   L + + + LL +   P +AE+ +++H P         S 
Sbjct: 2   SGLSQPTLRRIIRQALEQTD-LADTLPESLLAQLKLPPLAESLHLLHAPPPEYSIGQLSD 60

Query: 223 ---PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
              PA +RL +DELLA Q+++ L R        +P+  +G +A+ +++++PF+ T +Q+ 
Sbjct: 61  GSLPAWQRLKFDELLAQQLSMRLARAHRLSGQAMPLVGDGSLAKTLVQSLPFALTAAQDR 120

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            + +I QD++Q + M R+LQGDVGSGKT+VA ++  AA+EAG Q  +MAP  ILA+QH+ 
Sbjct: 121 VLAEIRQDLAQPHPMHRLLQGDVGSGKTIVAALSALAAIEAGAQVAVMAPTEILAEQHHI 180

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +++ +   I V  ++G++ +  + +A   +A G+  + +GTHALFQD + +  L LVI
Sbjct: 181 KFRQWLEPLGISVAWLSGSLKKKEKDQAKAALADGRIRLAVGTHALFQDDVSFQNLGLVI 240

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++   D+D+S I E P GR PIK
Sbjct: 241 VDEQHRFGVAQRLALKNKGCDVHQLMMSATPIPRTLAMSFFADLDVSIIDELPPGRTPIK 300

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T ++   R  EV   +     +G++AYW+CP IEE +    ++  +    L       +I
Sbjct: 301 TRLVNNIRRHEVEGFVLATCKKGQQAYWVCPLIEESEALQLQTATDTLAELQAALPELTI 360

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++HGRM   +K +VM  F  G   +L+ATTVIEVG+DV +A++++IE+AE  GL+QLHQ
Sbjct: 361 GLVHGRMKSAEKATVMAEFAAGRIHVLVATTVIEVGVDVPNAALMVIEHAERMGLSQLHQ 420

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG  +SSC+LL+  PL   +  RL V+    DGF IA +DL  R  GE LG +Q
Sbjct: 421 LRGRVGRGAAVSSCVLLFAEPLGDTAKARLKVIYENTDGFEIARQDLNIRGPGEFLGARQ 480

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           SG+P    A  E    LLE AR+ A  ++ + PD+
Sbjct: 481 SGLPLLRFADLEQDLPLLEAARRIAPELIARHPDI 515


>gi|78212756|ref|YP_381535.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9605]
 gi|78197215|gb|ABB34980.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9605]
          Length = 812

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/691 (34%), Positives = 382/691 (55%), Gaps = 41/691 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  RGVG K++  L+ I            DLL Y+P   +D     +I  +    
Sbjct: 113 LDSPITQIRGVGPKFAARLASI------GLLLVRDLLRYYPRDHVDYSAMRRIEALVSGE 166

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRK--- 122
             TI   I + + F   +     I+   L D TG + +  F          + +G++   
Sbjct: 167 TATIVATIRRCNGFVSPRNTNLAIIELQLQDPTGRLKVSRFLAGKRFSSPAYLKGQQRLY 226

Query: 123 -----ITVTGKIKKLKNRIIMVHP-----HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFK 172
                + V+G +K     I    P            +  +   +  VY L  G+  D F+
Sbjct: 227 PVGATVAVSGLVKDGPYGITFQDPLIEVLDSPSSPVKSPSIGRLLPVYPLTEGVGADRFR 286

Query: 173 KIIVEALSRLPVLPEWIEK--DLLQKK-SFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
            +I + L   P+   W +    LLQ++   P+++++   +H P   KD E     R RL 
Sbjct: 287 SLIDQVL---PLAASWPDPLPALLQRQFQLPALSDSLQALHAP---KDRESLDQGRRRLV 340

Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGK---IAQKILRNIPFSPTKSQESAIKDILQ 286
           +DE L  Q+ LL  R+  +   G  ++++     +  + +  +PF  T +Q+   ++I  
Sbjct: 341 FDEFLLMQLGLLRRRQALRSRTGPDLDLQSSSSGLVGEFMDLLPFRFTAAQQRVFQEIEV 400

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           D+++   M R++QGDVGSGKT+VA+ A+ + + +G Q  +MAP  +LA+QHY  + ++  
Sbjct: 401 DLARSEPMARLVQGDVGSGKTVVAIAALLSTIASGWQGALMAPTEVLAEQHYRNLCQWLP 460

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              + V ++TG+ P+  RR+ L+ +A+G   +++GTHAL +D + + +L LV+VDEQHRF
Sbjct: 461 QLHVSVALLTGSTPRPRRRELLDDLANGSLKVLVGTHALLEDPVVFNRLGLVVVDEQHRF 520

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI+T ++   
Sbjct: 521 GVHQRDRLLNKGLQPHLLTMTATPIPRTLALSMHGDLDVSQIDELPPGRTPIRTRMLTAA 580

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGR 524
           + ++  E ++  +  G++AY + P ++E ++   RS VE    L       +A+  +HGR
Sbjct: 581 KREKAYELIREEVQLGQRAYVVLPLVDESEKLELRSAVEVHAELASEVFPDLAVGLLHGR 640

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +S  DK++V+  F  G  ++L++TTV+EVG+DV +AS+++I++AE FGLAQLHQLRGRVG
Sbjct: 641 LSSADKQAVLTDFSAGKTQVLVSTTVVEVGVDVPEASVMVIDHAERFGLAQLHQLRGRVG 700

Query: 585 RGEEISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           RG   S C+L+     PL++    RL VL  + DGF IAE DL+ R  G++LG +QSG+P
Sbjct: 701 RGAAASHCLLINGSSNPLARQ---RLDVLVRSTDGFEIAEMDLRLRGPGQVLGTRQSGLP 757

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
              +A      ++LE AR  A+ +L  DP+L
Sbjct: 758 DLALASLADDGAVLEDARTAAQELLKTDPEL 788


>gi|33240278|ref|NP_875220.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237805|gb|AAP99872.1| RecG-like helicase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 841

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 252/702 (35%), Positives = 394/702 (56%), Gaps = 39/702 (5%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERI 69
           +PL   +GVG       +K+  C  A     I DLLF++P  ++D     +I  +     
Sbjct: 144 SPLGEVKGVG-------TKMCECFAALNLFVIKDLLFHYPRDYVDYSSLKRIFSLVPGET 196

Query: 70  VTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFY-----RKTEMLK---NVFF 118
            TI   I + +S+   + +   IL   L D TG I +  F+      K   LK   +++ 
Sbjct: 197 TTIIATIRRSNSYTSPRNQNLSILELHLEDMTGRIKISKFFIGRRFSKRSFLKKQESLYP 256

Query: 119 EGRKITVTGKIK------KLKNRIIMVHPH-YIFHNSQDVNFPLIEAVYSLPTGLSVDLF 171
           +G  + V+G +K         + +I V  H      SQ +    I  +Y L  GL  D  
Sbjct: 257 KGTIVAVSGLVKGNSYGKSFNDPLIEVLEHKQALLKSQTIG--RILPIYQLTDGLKADRL 314

Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
           ++I+   +     L + +  +  +  S     EA   IH PR     E+   A+ RL +D
Sbjct: 315 RQIVHSVIPLALDLEDPLPVNTRESLSLLDKGEAIKQIHRPRNQ---EYLKKAKRRLVFD 371

Query: 232 ELLAGQIALLLMRKQFKK--EIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDM 288
           E L  Q+ LL  R +  K     + IN E +   ++ L+ +PF+ T SQ+  +  I  D+
Sbjct: 372 EFLFLQLGLLKRRLELGKCKAPSLFINKEREGFTEQFLKLLPFALTNSQQQVLTQIESDI 431

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           +    M R++QGDVG GKT+VA+ A+  AVE+G Q   MAP  +LAQQHY  + K+    
Sbjct: 432 AMSKPMSRLVQGDVGCGKTVVAIAALLRAVESGWQGAFMAPTEVLAQQHYLTLCKWLPQL 491

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            + VE++TG+     R++    +++G   II+GTHAL ++S+ + +L LV+VDEQHRFGV
Sbjct: 492 HVTVELLTGSTAAKERKRIFADLSNGNLKIIVGTHALIEESVSFRRLGLVVVDEQHRFGV 551

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            QR  L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI+T ++P +  
Sbjct: 552 NQRNLLLNKGLHPHLLTMTATPIPRTLALSIHGDLDVSQINELPPGRTPIETQLMPSSER 611

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMS 526
            +  E +K  L  G +AY + P ++E ++   RS ++ ++ L     S   + ++HGRM 
Sbjct: 612 YQAYEAIKEQLDIGSQAYVVLPLVDESEKLELRSAIDVYHELSSEILSEYKVGLLHGRMH 671

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ +++ F N   ++L++TTV+EVG+DV +A++++I++A+ FGLAQLHQLRGRVGRG
Sbjct: 672 SSEKKGIINKFVNKEIEVLVSTTVVEVGVDVPEATMMVIDHADRFGLAQLHQLRGRVGRG 731

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            + S CIL+     S  S  RL VL N+ DGF I+E DL+ R  G++LG +QSG+P F +
Sbjct: 732 TKDSKCILI-DTAKSLASKNRLEVLVNSHDGFEISEIDLRLRGPGQVLGTRQSGLPDFAL 790

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLY 688
           A     +++LE AR++A+ IL  DPDL  ++ + ++I+L  Y
Sbjct: 791 ANLVNDETILESAREEAEKILKSDPDL--IQNKLLKIMLDDY 830


>gi|297544771|ref|YP_003677073.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842546|gb|ADH61062.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 681

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 255/675 (37%), Positives = 392/675 (58%), Gaps = 24/675 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL   +   +GVG K +  L K+            DLLFY P  + +R    KI +++  
Sbjct: 2   PLNLDIQYVKGVGPKRAKLLKKL------GIQTVEDLLFYFPKDYENRSSILKIEDLTVG 55

Query: 68  RIVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
              T  GYI   S  +++  R    K+ + DGTG + L+++ +    +KN    G +  +
Sbjct: 56  EKQTFKGYIV-GSPREIKTSRVIITKVPVKDGTGAVELVWYNQ--PYIKNNLKIGEEYII 112

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182
            GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   +
Sbjct: 113 NGKLRFKYGQLIVENP--VIEKSEDFKLNTGRIVPIYGLTEGLTQNAIRKIMFNALKEYV 170

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   Q+AL L
Sbjct: 171 QEVEEFFDEEFLSEKRLMDIKSALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFL 227

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M+   K++ GI    E    +  +  +PF  T++Q   +K+I+ DM+    M R++QGDV
Sbjct: 228 MKGSAKEKKGIKF--ERVDLKPFIMGLPFKLTQAQVKVLKEIIADMNSHKVMNRLVQGDV 285

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  +
Sbjct: 286 GSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYSTLKELFKNTDIKIGLLSGSLSPS 345

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
           ++++ LE+I  G   II+GTHAL +D + +  L L I DEQHRFGV+QR  LTQK   P 
Sbjct: 346 NKKEVLEKIKKGDYDIIVGTHALIEDDVVFNNLGLCITDEQHRFGVRQRALLTQKGKNPD 405

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +G
Sbjct: 406 VLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKG 465

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNG 540
           ++ Y +CP IEE  + +  S    +  +++     + + ++HG+M+D +KE VM+ F NG
Sbjct: 466 RQVYVVCPLIEESDKISAMSAEIVYREIYKDAFKEAKVGLLHGKMADSEKEKVMEEFVNG 525

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGR E  S CIL+ +   
Sbjct: 526 KIDILVSTTVIEVGVNVPNATVMIIENAERFGLAQLHQLRGRVGRSEFQSYCILISYSN- 584

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S  +  RL VL  T DGF IAE+DL+ R  GE LG++Q G+P+F IA       +L+I +
Sbjct: 585 SDVAKKRLGVLAQTSDGFKIAEKDLEIRGPGEFLGLRQHGLPEFKIANIVEDIDILKIVQ 644

Query: 661 KDAKHILTQDPDLTS 675
           KD + +L +DP L +
Sbjct: 645 KDVEELLKKDPKLEN 659


>gi|17547430|ref|NP_520832.1| ATP-dependent DNA helicase [Ralstonia solanacearum GMI1000]
 gi|17429733|emb|CAD16418.1| probable atp-dependent dna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 671

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 245/634 (38%), Positives = 357/634 (56%), Gaps = 41/634 (6%)

Query: 73  TGYISQ------HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           TG+ +Q       +    + RR   + + D +GE+ L F       +K +  EG ++ V 
Sbjct: 26  TGWAAQVDGVVTRNEVAFRPRRQLVVHIADDSGELVLRFLNFYGSQVKQMA-EGARLRVR 84

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           G+++       MVHP  +   + D   P  +  VY    G++    +K I+ AL R P L
Sbjct: 85  GEVRGGFFGAEMVHP-AVRAVTPDEPLPDRLTPVYPSTAGVAQAYLRKAILNALGRTP-L 142

Query: 186 PEWIEKDLLQKKSFP----SIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQ 237
           PE +   LL+    P    + AEA  ++H P    D     E T PA  R+ +DELLA Q
Sbjct: 143 PETLPDSLLRGPLAPLKLMAPAEAVRLLHQPTPDVDEHSLVERTHPAWLRIKFDELLAQQ 202

Query: 238 IALLLMRKQFKKEI-GIPI----NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           ++L   R Q  +     P+      +G +A + L  +PF  T +Q    ++I  D+++  
Sbjct: 203 LSL--KRAQAARRTRSAPVLRAGGADGLLA-RFLAALPFKLTGAQARVWEEIRADLARPY 259

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R+LQGDVGSGKT++A +A   A++AG QA +MAP  +LA+QHY  +  +     + +
Sbjct: 260 PMQRLLQGDVGSGKTVIAALAACQAIDAGRQAALMAPTELLAEQHYRKLSAWLAPLGVDI 319

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G++ +  + +A  R+A G A ++IGTHAL QD++ + +L L +VDEQHRFGV QRL
Sbjct: 320 VWLAGSLKRKQKDEAAARVAAGTAQLVIGTHALIQDTVTFARLGLAVVDEQHRFGVAQRL 379

Query: 413 KLTQKATA------------PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            L  KA              PH L+M+ATPIPRTL +T   D+D+S I E P GR P+ T
Sbjct: 380 ALRGKAGGTDTPVAETAQLVPHQLMMSATPIPRTLAMTYYADLDVSAIDELPPGRTPVVT 439

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519
            ++   R DEVIER+     EG++ YW+CP IEE +    ++ VE F +L +      + 
Sbjct: 440 RLVNDARRDEVIERIHAAAREGRQVYWVCPLIEESEALQLQTAVETFETLSQSLAGLKVG 499

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           ++HGR+   DK +VM +F  G   +L+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQL
Sbjct: 500 LVHGRLPSADKAAVMSAFAGGELHVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQL 559

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           RGRVGRG   S CILLY  PLS  +  RL  ++ T DGF IA  DL  R  GE LG +QS
Sbjct: 560 RGRVGRGTAESVCILLYQAPLSPTAKQRLQTMRETTDGFEIARRDLDIRGPGEFLGARQS 619

Query: 640 GMPKFLIAQPELHDS-LLEIARKDAKHILTQDPD 672
           G      A    HD+ ++E A+  A+ +L + PD
Sbjct: 620 GEAMLRFADLN-HDAWMVEFAQGAAEQMLARFPD 652


>gi|119896768|ref|YP_931981.1| ATP-dependent DNA helicase RecG [Azoarcus sp. BH72]
 gi|119669181|emb|CAL93094.1| ATP-dependent DNA helicase [Azoarcus sp. BH72]
          Length = 679

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 239/671 (35%), Positives = 369/671 (54%), Gaps = 27/671 (4%)

Query: 14  STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73
           S + G+G++ +  L K+      +  R  DL+ + P  + D      I          I 
Sbjct: 3   SGWAGLGEQLASRLRKL------DLHRQEDLVVHLPLRYEDETRLTPIGVARAGFPAQIE 56

Query: 74  GYISQHSSFQLQKRRPYKILLNDGTGEITLLF--FYRKTEMLKNVFFEGRKITVTGKIKK 131
           G ++      L+ RR     + D +G +   +  FY   +    V   GR++ + G+++ 
Sbjct: 57  GEVTS-CEVVLRPRRQLVARVRDDSGTLVARWINFYPSQQKQLAV---GRRVRLFGEVRG 112

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
                 MVHP      + D    L EA   VY    GL     +K+I  AL  +P L + 
Sbjct: 113 GFFGDEMVHPRV---RNIDPGEGLPEALTPVYPTTAGLGQTTLRKLIDRALKTVP-LQDL 168

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMR 244
           + +D  +    P  AEA   +H+P    D         PA  R+ ++ELL  Q++L    
Sbjct: 169 LPEDARRALDLPGFAEALTALHHPAPDADPIALENREHPAWRRIKFEELLVQQLSLRRAY 228

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              +    + +    ++   ++R +PF+ T +Q+ A+ +I  D+   + M R+LQGDVGS
Sbjct: 229 NARRAREAVVLPARQQLTAGLVRGLPFALTSAQQRAVGEIAADLGAAHPMQRLLQGDVGS 288

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA +AM  A E G QA +MAP  ILA+QHY+ +  + +   + +  ++G+  +  R
Sbjct: 289 GKTIVAALAMLQAAENGWQAALMAPTEILAEQHYKKLAAWLEPLGVGIAWLSGSRRKRER 348

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---AP 421
              L R+  G+  + +GTHAL +D +   +L L I+DEQHRFGV+QRL L +K      P
Sbjct: 349 EAELARLQSGEVLLAVGTHALIEDEVALPRLALAIIDEQHRFGVRQRLALREKGAHGLRP 408

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H+L+M+ATPIPRTL +T   D+D+S + E P GR PI+T ++   R +EV+ R++    +
Sbjct: 409 HMLMMSATPIPRTLAMTHYADLDVSVLDELPPGRTPIRTKLVSDARREEVVGRVRDACLQ 468

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP IEE +    ++ ++ + +L E      + ++HGR+   +K + M +F  G
Sbjct: 469 GRQAYWVCPLIEESEALQLQTALDTYAALSEALPELRVGLVHGRLKADEKSATMAAFSAG 528

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S CILL+  PL
Sbjct: 529 ELQVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLFAQPL 588

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RL V+    DGF IA EDL+ R  GE +G +QSG+P    A  EL   L+E AR
Sbjct: 589 SENGRARLKVIYEHTDGFAIAREDLQLRGPGEFVGARQSGVPLLRYADLELDAGLIEPAR 648

Query: 661 KDAKHILTQDP 671
             A+ +L   P
Sbjct: 649 ALAERMLRDAP 659


>gi|206895105|ref|YP_002246645.1| ATP-dependent DNA helicase RecG [Coprothermobacter proteolyticus
           DSM 5265]
 gi|206737722|gb|ACI16800.1| ATP-dependent DNA helicase RecG [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 793

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 244/679 (35%), Positives = 376/679 (55%), Gaps = 40/679 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+S  +GVG K    L K+      + T   DL+ Y P  F+DR    K+ ++      T
Sbjct: 112 PVSKLKGVGSKVGASLEKL------DVTTVWDLIHYVPMRFVDRSKILKVKQLRTGIDAT 165

Query: 72  ITGYISQHSSFQLQKR-RPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           + G +      +LQK  R Y++L   L D TG + L+FF    E L   F  G+ + VTG
Sbjct: 166 VLGTVV---DVKLQKTYRGYRLLTVTLQDDTGRVDLVFF--NQEFLARKFRRGQLVMVTG 220

Query: 128 KIKKLKNRIIMVH----PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--- 180
           K++    R+ + +       +    +++  P+I  VY    G + +  +K+I  AL    
Sbjct: 221 KVESNHGRLQLTNLRSDSFEVLEPGKEI-LPMI-PVYRAGAGTTTNTIRKVIFNALDQYS 278

Query: 181 -RLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
            ++P + P W      Q+K F S  +A   +H P     FE    AR  +AY E+   Q+
Sbjct: 279 HKVPEIFPYW------QEKGFLSYPDAVEKLHRPENQAQFE---KARSEIAYREIFVLQV 329

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
            L L +K   +  GI   VE    +++ R +PF+ T +Q+  I +IL DM +   M R+L
Sbjct: 330 LLALRKKVIGQAQGISFRVERDWIEELERKLPFTLTNAQKRVILEILNDMQKSKPMNRLL 389

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA+ AM  A + G Q+ +M P  +LA QHY    ++ +   + V ++ G+
Sbjct: 390 QGDVGSGKTVVAMFAMFVAAKNGKQSAVMVPTEVLAFQHYMVFSQWAEQFGLRVGLLVGS 449

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL--TQ 416
           +  + + K    +  GQ  I++GTHAL Q+   +  L LVI+DEQHRFGV QR  L    
Sbjct: 450 LSASEKSKVKRYLKSGQLDIVVGTHALIQEDTSFKDLGLVIIDEQHRFGVYQRAALISMD 509

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K+  P VL+M+ATPIPRTLVLT  GD+D+S I E P  RKP+KT  +   R   V E +K
Sbjct: 510 KSKQPDVLVMSATPIPRTLVLTYYGDLDVSVIDELPPNRKPVKTFWVSEKRRSSVYEAVK 569

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVM 534
             L EG++AY + P IEE +     +    +  L   F     + ++HG+M+  +K++VM
Sbjct: 570 RELDEGRQAYVVAPLIEESESIEAAAATSLYEELCSTFLKDYKVGLLHGKMNKEEKKNVM 629

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           D F+ G+ ++L++TTVIEVG+DV +A++++IE A+ FGL+QLHQLRGRV R    + C L
Sbjct: 630 DEFRKGSLQVLVSTTVIEVGVDVPNATVMVIEGADRFGLSQLHQLRGRVVRSSYQAYCYL 689

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           + +   ++ +  RL  +    DGF +AE+DL  R  GE++G +Q G     +A       
Sbjct: 690 IANAK-TQEAVERLESMVKYSDGFALAEKDLLLRGPGELMGERQHGFSGMRVADLIKDMK 748

Query: 655 LLEIARKDAKHILTQDPDL 673
           +LE AR+DA+ ++++DP+L
Sbjct: 749 MLEPARQDAERLVSEDPNL 767


>gi|124023369|ref|YP_001017676.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
           9303]
 gi|123963655|gb|ABM78411.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT
           9303]
          Length = 846

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 246/692 (35%), Positives = 384/692 (55%), Gaps = 41/692 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PLS  +G+G K +  L+ +      +  +      Y+P  ++D     +I  +    
Sbjct: 147 LESPLSEVKGIGPKLAERLAGLGLLLVKDLLQ------YYPRDYVDYSSLRRIQALEAGE 200

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFE------ 119
             TI   + +   F   +     IL   L D TG + +  F+         + +      
Sbjct: 201 AATIVATVRRCHGFTSPRNPNLSILELQLQDPTGRLKVRRFFAGRRFSSPAYLKSQSRLY 260

Query: 120 --GRKITVTGKIK------KLKNRII--MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVD 169
             G  + V+G +K        ++ +I  M  PH     SQ +   L   VY+L  GL+ D
Sbjct: 261 PPGVTVAVSGLVKGGPYGMSFQDPLIEVMESPHSPL-RSQSIGRLL--PVYALTEGLTAD 317

Query: 170 LFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
            F+ ++ + L      PE + +   Q    PS ++A   IH+P    D      AR RL 
Sbjct: 318 RFRDLVRQVLPLAASWPESLPEPRRQALRLPSRSDALIAIHHP---DDQHTLQSARRRLV 374

Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGK---IAQKILRNIPFSPTKSQESAIKDILQ 286
           +DE L  Q+ LL  R + +      +   G+   +  + L  +PF  T +Q+  +++I  
Sbjct: 375 FDEFLLLQLGLLKRRAELRSCSAPVLQTAGQRDGLVARFLELLPFPLTGAQQRVLREIEA 434

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           D+     M R++QGDVGSGKT+VA+ A+  AVEAG Q   MAP  +LA+QHY  +  +  
Sbjct: 435 DLVLSEPMARLIQGDVGSGKTVVAIAALLTAVEAGWQGAFMAPTEVLAEQHYRTLCCWLP 494

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              + VE++TG   +  RR+ L+ + +G   I++GTHAL +D + + +L LV+VDEQHRF
Sbjct: 495 QLHVSVELLTGATTRIRRRQILDDLVNGSLKILVGTHALIEDPVAFSRLGLVVVDEQHRF 554

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV+QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI+T +I   
Sbjct: 555 GVKQRNRLLNKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIQTQMIRGC 614

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGR 524
             D+  + ++  +S G++AY + P IE+ ++ + RS V+  + L E   +  ++ ++HGR
Sbjct: 615 DRDQAYQLIRDQVSRGQRAYVVLPLIEDSEKLDLRSAVKVHSHLSEQVFAEFTVGLLHGR 674

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +S  +K+ V+ SF  G C++L++TTV+EVG+DV  AS+++I++A+ FGLAQLHQLRGRVG
Sbjct: 675 LSSSEKQGVIQSFAAGECQVLVSTTVVEVGVDVPQASVMVIDHADRFGLAQLHQLRGRVG 734

Query: 585 RGEEISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           RG   S C+L+     PL++    RL VL  + DGF IAE DL+ R  G++LG KQSG+P
Sbjct: 735 RGAAASHCVLINDSTNPLARQ---RLEVLVRSSDGFEIAEIDLRLRGPGQVLGTKQSGLP 791

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
              +A      S+LE AR +A+ +L+ DP+LT
Sbjct: 792 DLALASLADDGSVLEEARDEAQRLLSDDPNLT 823


>gi|154504978|ref|ZP_02041716.1| hypothetical protein RUMGNA_02488 [Ruminococcus gnavus ATCC 29149]
 gi|153794861|gb|EDN77281.1| hypothetical protein RUMGNA_02488 [Ruminococcus gnavus ATCC 29149]
          Length = 686

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 246/682 (36%), Positives = 385/682 (56%), Gaps = 32/682 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERIVT 71
           +S  +GVG+K      K      A      DLL Y+P ++ D +  P  I EI E + VT
Sbjct: 7   ISVLKGVGEKTEQLFIK------AGVHTIGDLLAYYPRTY-DIYEDPISIGEIQEGKTVT 59

Query: 72  ITGYI------SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           + G I      SQ+   Q+       + L D TG + +++F  +   L+N    G  IT+
Sbjct: 60  VIGAIFGRIQVSQNKKMQITT-----LYLKDMTGTLKVIWF--RMPFLRNTLGRGGVITL 112

Query: 126 TGKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
            G+I + K+ ++M HP   + + S +     ++ VY+L  GL+ +  KK + +AL ++  
Sbjct: 113 RGRIVRKKDALVMEHPEIFYPSASYEEKRNTMQPVYALTAGLTNNAVKKAVAQALEQVEG 172

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E++ ++L+ +        A   IH P   ++F     AR+R  ++E L   ++L +++
Sbjct: 173 IREFLPEELICRYHLLDRRTAMEGIHFPETKEEF---YEARKRFVFEEFLIFVLSLRMIK 229

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           ++  +        +     + L  +P+  T +Q+   ++IL+D+S ++ M R++QGDVGS
Sbjct: 230 EREDRAKNHYGFCDQPKVDEFLYALPYELTGAQKKVWQEILRDISGESVMSRLVQGDVGS 289

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV--EIITGNMPQA 362
           GKT+VAL+A+      G Q+ +MAP  +LA+QHYE I    +   I +  E++TG+M   
Sbjct: 290 GKTIVALLALMYTGLNGYQSAMMAPTEVLARQHYENISGMLEAYGIPLKTELLTGSMTAK 349

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R+A  RI  G+A I+IGTHAL Q+ +QY  L LV+ DEQHRFGV+QR  L  K   PH
Sbjct: 350 AKREAYARIEAGEADIVIGTHALIQEKVQYQNLALVVTDEQHRFGVKQRETLAGKGVLPH 409

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+M+ATPIPRTL +   GD+DIS I E P  R PIK  ++     +     +K  +  G
Sbjct: 410 ILVMSATPIPRTLAIILYGDLDISVIDELPKNRLPIKNCVVDTGYRNTAYTFMKKQVQSG 469

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNG 540
           ++ Y ICP +EE +     +V +    L +    S+ +  +HG+M    K+ +M++F   
Sbjct: 470 RQCYVICPMVEESEALEAENVTDYSQMLQDIMGESVKVGCLHGKMKQAQKDEIMEAFGKN 529

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L++TTVIEVGIDV +A++++IENAE FGLAQLHQLRGRVGRG   S CI +  P  
Sbjct: 530 EIQILVSTTVIEVGIDVPNATVMMIENAERFGLAQLHQLRGRVGRGGHQSYCIFI-SPSK 588

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL-LEIA 659
           SK +  RL +L  + DGF IA EDL+ R  G++ GI+QSG+  F +      DSL L+ A
Sbjct: 589 SKETKERLGILNQSNDGFFIAGEDLRLRGPGDLFGIRQSGLMDFKLGDV-FQDSLILKQA 647

Query: 660 RKDAKHILTQDPDLTSVRGQSI 681
            + A  +L  DP L S R + +
Sbjct: 648 AEAAGELLRTDPGLKSERNRRL 669


>gi|52080190|ref|YP_078981.1| ATP-dependent DNA helicase RecG [Bacillus licheniformis ATCC 14580]
 gi|52785567|ref|YP_091396.1| ATP-dependent DNA helicase RecG [Bacillus licheniformis ATCC 14580]
 gi|319646031|ref|ZP_08000261.1| RecG protein [Bacillus sp. BT1B_CT2]
 gi|52003401|gb|AAU23343.1| ATP-dependent DNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52348069|gb|AAU40703.1| RecG [Bacillus licheniformis ATCC 14580]
 gi|317391781|gb|EFV72578.1| RecG protein [Bacillus sp. BT1B_CT2]
          Length = 682

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 242/649 (37%), Positives = 371/649 (57%), Gaps = 21/649 (3%)

Query: 42  IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTG 99
           +DLL Y P  + D   R  + +++ +  VT+ G +    S     +KR      L  G  
Sbjct: 32  LDLLNYFPYRYDDYELR-DLEDVAHDERVTVEGKVHSEPSLAYYGKKRSRLTFRLLVGNY 90

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
            IT + F R    LK     G  +TVTGK  K +  +++        N        IE V
Sbjct: 91  LITAVCFNRP--YLKKKLAIGSIVTVTGKWDKHRQSVMVQE----LKNGPHQGDQSIEPV 144

Query: 160 YSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           YS+   ++V   +K+I EA+ S LP   + + + L       S  EA   +H P      
Sbjct: 145 YSVKENITVKTMRKLIQEAVRSHLPFAEDPLPEKLRTAYKLLSYQEAVKAMHKPESR--- 201

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKS 276
           E    AR R  Y+E L  Q+ +  +RK F++E   GI      +     ++++PF  T +
Sbjct: 202 EALKHARRRFVYEEFLLFQLKMQALRK-FEREASDGISHTFRLEDVNSFVKSLPFPLTNA 260

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  A+ DIL+DM+   +M R+LQGDVGSGKT VA IA+ A++ +G Q  +M P  ILA+Q
Sbjct: 261 QAKALDDILRDMASGYKMNRLLQGDVGSGKTAVAAIALYASLLSGFQGAMMVPTEILAEQ 320

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H + +    +   + V ++T ++    RR+ LER+  G+  I++GTHAL QD + + +L 
Sbjct: 321 HADSLVSLFEQHDVNVALLTSSVKGKRRRELLERLKEGEIDILVGTHALIQDDVHFKQLG 380

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV+QR KL  K   P VL MTATPIPRTL +T  G++D+S I E PAGRK
Sbjct: 381 LVITDEQHRFGVEQRKKLRSKGKDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRK 440

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I+T  +  + ++ ++  +   L +G++AY ICP IEE  + + ++ ++  + L   F  
Sbjct: 441 RIETYWVKHDMLERILAFIDKELKKGRQAYVICPLIEESDKLDVQNAIDVHSMLTHAFRG 500

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              I ++HG++S+ +KE VM  F    C++L++TTV+EVG++V +A++++I +A+ FGL+
Sbjct: 501 RWQIGLMHGKLSNDEKEQVMRQFSKNECQILVSTTVVEVGVNVPNATVMLIYDADRFGLS 560

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG+  S CIL+  P  S+    R+S++  T DGF ++E+DL+ R  G+  
Sbjct: 561 QLHQLRGRVGRGDHQSYCILMADPK-SETGKERMSIMSETTDGFELSEKDLELRGPGDFF 619

Query: 635 GIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           G KQSGMP+F +A   +HD   LE AR+DA  +++     T    +S+R
Sbjct: 620 GKKQSGMPEFKVADM-VHDYRALETARRDAAELVSSKAFWTDAEYKSLR 667


>gi|166031900|ref|ZP_02234729.1| hypothetical protein DORFOR_01601 [Dorea formicigenerans ATCC
           27755]
 gi|166028353|gb|EDR47110.1| hypothetical protein DORFOR_01601 [Dorea formicigenerans ATCC
           27755]
          Length = 676

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 247/670 (36%), Positives = 379/670 (56%), Gaps = 34/670 (5%)

Query: 17  RGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74
           +GVG+K     +K  I   G        DLL Y+P ++        I+E+ + R VT+TG
Sbjct: 11  KGVGEKTEKLFAKLGIYTVG--------DLLRYYPRNYDVYEEAVPIAEVEDGRTVTVTG 62

Query: 75  YISQHSSFQLQKRRPYK---ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            I      Q+   R  +   I + D TG I  ++F  +   LKN    G +IT+ G+   
Sbjct: 63  MI--FGRVQVGGSRNLQVTTIYVKDLTGTIKAVWF--RMPFLKNTLAGGGQITLRGRAVN 118

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL--IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            ++ +++ HP  IF+ S+     L  ++ +Y+L  GL+ +   K + + +  L +  E +
Sbjct: 119 RRDGLVLEHPE-IFYPSEKYEEKLHTLQPIYNLTAGLTNNAISKAVKQVVESLDLTKEHL 177

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR---KQ 246
            +++           A   IH P   +D E    ARERL ++E L   +A+  ++    +
Sbjct: 178 PEEIRLHYQLAEYNYAIRGIHFP---EDKEVFYHARERLVFEEFLQFILAIRKLKDSNSR 234

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
              E  IP+++  +  QK L   PF  T +Q++  ++I QDM+ ++ M R++QGDVGSGK
Sbjct: 235 MDNEYVIPLDLRTEEFQKAL---PFELTGAQQNVWREIQQDMASEHAMSRLVQGDVGSGK 291

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHR 364
           T+VA++A+      G QA +MAP  +LA+QHYE I    +  N  I V ++TG+M    +
Sbjct: 292 TIVAVLALLNTALKGYQAAMMAPTEVLARQHYESITSLFEAYNIPIKVVLLTGSMTAKEK 351

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R+A +RI  G A II+GTHAL QD++ Y  L LV+ DEQHRFGV+QR    +K   PHVL
Sbjct: 352 RRAYDRIECGLAKIIVGTHALIQDAVYYDNLALVVTDEQHRFGVKQRESFAKKGGVPHVL 411

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPRTL +   GD+DIS I E PA R PIK  ++  +        +K  ++EG++
Sbjct: 412 VMSATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVDTSYRQTAYTFMKKQIAEGRQ 471

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTC 542
            Y ICP +EE +     +V +    L E   + I +  +HG+M    K+ +M+ F     
Sbjct: 472 CYIICPMVEESEAMEAENVTDYSRMLQEEMGTQIVVDHLHGKMKQAAKDEIMERFGRNEI 531

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L++TTVIEVGIDV +A++++IENAE FGLAQLHQLRGRVGRG+  S CI +     +K
Sbjct: 532 QILVSTTVIEVGIDVPNATVMMIENAERFGLAQLHQLRGRVGRGKYQSYCIFMTGSK-AK 590

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL +L  T DGF IA EDLK R  G++ GI+QSG+  F +       ++L+ A + 
Sbjct: 591 ETKKRLEILNKTNDGFKIASEDLKLRGPGDLFGIRQSGLMDFGLGDIYQDAAILQKANEA 650

Query: 663 AKHILTQDPD 672
           A+ +L  +P+
Sbjct: 651 AEWLLKNNPE 660


>gi|254479490|ref|ZP_05092814.1| ATP-dependent DNA helicase RecG [Carboxydibrachium pacificum DSM
           12653]
 gi|214034575|gb|EEB75325.1| ATP-dependent DNA helicase RecG [Carboxydibrachium pacificum DSM
           12653]
          Length = 682

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 251/639 (39%), Positives = 386/639 (60%), Gaps = 19/639 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY--KILLNDGTGE 100
           DL+FY P  + DR    KI ++      T   YI+  S+ +++  R    KI + DGTG 
Sbjct: 31  DLIFYFPRDYEDRSEIVKIEDLVVGEKQTFKAYIA-GSAREVKTSRVVITKIPVKDGTGA 89

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL--IEA 158
           + L+++      +KN F  G +  ++GK++    ++++ +P  +  + +D+N     I  
Sbjct: 90  VELVWY--NQPYMKNNFKIGEEYIISGKLQFKYGQLVVENP-VLEKSEEDLNLNTGRIVP 146

Query: 159 VYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VY L  GL+ ++ +K+I  ALS  L  + E+ E++ L++K   ++ EA   IH P   KD
Sbjct: 147 VYGLTEGLTQNILRKVIFNALSEYLDEVEEFFEEEFLREKGLMNLKEALLNIHFP---KD 203

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK-ILRNIPFSPTKS 276
            E  + A+ RL Y EL   Q+AL L++K  K++ GI      K+  K  + N+PF  T +
Sbjct: 204 EEKLARAKYRLKYQELFLLQLALFLVKKSVKEKRGIRFR---KVDIKPFVSNLPFKLTSA 260

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   +K+I+ DM+    M R++QGDVGSGKT+VA  AM  A + G Q  +MAP  ILA+Q
Sbjct: 261 QMKVLKEIILDMASDKVMNRLIQGDVGSGKTIVAAFAMYIAAKNGYQVAMMAPTEILAKQ 320

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY+ +++  + T I + +++G++  + R++ LE+I  G+  +++GTHAL ++ + +  L 
Sbjct: 321 HYKTLEEIFKGTDIRIGLLSGSLSPSGRKEVLEKIEKGEYDVVVGTHALIEEDVSFKNLG 380

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L I DEQHRFGV+QR  L QK   P VL+MTATPIPRTL L   GD+DIS I + P GRK
Sbjct: 381 LCITDEQHRFGVRQRALLAQKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRK 440

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514
            +KT +IP +   +  E     + +G++ Y +CP IEE  +    S    +  +++    
Sbjct: 441 RVKTYVIPSSMRKKAYEFAIKEVKKGRQVYVVCPLIEESDKIKAASAEIVYREIYKDAFK 500

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + + ++HG+MSD DKE +M++F  G   +L++TTVIEVG++V +A+++I+ENAE FGLA
Sbjct: 501 EARVGLLHGKMSDSDKERIMEAFVRGEIDILVSTTVIEVGVNVPNATVMIVENAERFGLA 560

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGR E  S CIL+ + P S+ +  RL VL    DGF IAE DL+ R  GE L
Sbjct: 561 QLHQLRGRVGRSEFQSYCILINYSP-SETAKKRLEVLARISDGFKIAERDLEIRGPGEFL 619

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           G KQ G+P+F IA       +L+  +KD + +L +DP L
Sbjct: 620 GEKQHGLPEFKIANLFEDIDILKRVQKDVESLLEEDPKL 658


>gi|169827086|ref|YP_001697244.1| ATP-dependent DNA helicase RecG [Lysinibacillus sphaericus C3-41]
 gi|168991574|gb|ACA39114.1| ATP-dependent DNA helicase recG [Lysinibacillus sphaericus C3-41]
          Length = 688

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 253/674 (37%), Positives = 380/674 (56%), Gaps = 29/674 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L+ P++  +GVGK+ +  L  + IN          DLL+  P    D   +      
Sbjct: 8   MTELYGPVNELKGVGKETAAHLESLGINT-------IADLLWTFPHRHEDFRLKDLAQTP 60

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRK 122
             ER VT+   + +  +     R   ++ +    G   + ++FF +    LK     G  
Sbjct: 61  HNER-VTVECKVEREPTILFLGRNKSRLQVTVLAGRHLVKVVFFNQG--YLKQKLVPGSI 117

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           ITVTGK  +   R ++      F    D V+F   E VYSL   +    F+K + + L  
Sbjct: 118 ITVTGKWDR--GRQVINGTSVSFGPKTDQVDF---EPVYSLKGLIQQKRFRKYMRQVLDE 172

Query: 182 LPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
               LP+ I +          I E    IH P   +D +    AR R AY+ELL  Q+ +
Sbjct: 173 YGANLPDAIPQHFQDSYKLLPIQEGLEGIHFP---QDAQHAKQARRRFAYEELLNFQLRM 229

Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             +RK  K+ E G  I  +  + ++ +  +P+  T +Q+  + +I +D+ + +RM R+LQ
Sbjct: 230 QALRKVRKENEQGTVIQYDVHLLREFIAALPYELTNAQKRVVNEICKDLKEPHRMNRLLQ 289

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA I + AAV AG Q  +MAP  ILA+QH E ++++ Q   + V +++G+ 
Sbjct: 290 GDVGSGKTVVAAIGLYAAVSAGYQGALMAPTEILAEQHLENLQEWFQPFGVRVALLSGST 349

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR  L  +A+G+  I+IGTHAL Q  + + KL  VI DEQHRFGV+QR  L  K  
Sbjct: 350 KMKERRVILADLANGELDIVIGTHALIQPDVIFKKLGFVITDEQHRFGVEQRRILRDKGE 409

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T  +   +   V+ +L+  L
Sbjct: 410 NPDVLFMTATPIPRTLAITAFGEMDVSMIDEMPAGRKQIETHWMKKEQFGSVMSKLEGEL 469

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSF 537
           + G++AY ICP IEE  + + ++ VE +  L  +F     + ++HGR+S  +K++VM +F
Sbjct: 470 AAGRQAYAICPLIEESDKLDVQNAVEIYEQLATYFNGRYQVGLMHGRLSADEKDAVMRAF 529

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G+ ++L++TTV+EVG++V +A+ +I+ +AE FGLAQLHQLRGRVGRGE  S CILL  
Sbjct: 530 SDGSIQVLVSTTVVEVGVNVPNATFMIVYDAERFGLAQLHQLRGRVGRGEHQSYCILLAD 589

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLL 656
           P  S     R+  +  T DGF +AE+DL+ R  G+  G KQSG+P F +A   +HD  +L
Sbjct: 590 PK-SDEGKERMQSMTETNDGFRLAEKDLELRGPGDFFGRKQSGLPDFKVADL-VHDYRIL 647

Query: 657 EIARKDAKHILTQD 670
           E ARKDA  +L  D
Sbjct: 648 ETARKDATMMLETD 661


>gi|254253194|ref|ZP_04946512.1| RecG-like helicase [Burkholderia dolosa AUO158]
 gi|124895803|gb|EAY69683.1| RecG-like helicase [Burkholderia dolosa AUO158]
          Length = 792

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 245/660 (37%), Positives = 365/660 (55%), Gaps = 25/660 (3%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I E+    +    G +  +     + RR   + + D  
Sbjct: 119 TRSIDLVLHLPMRYEDETTLTPIGELLPGGVAQTEGVVIDNE-VAYRPRRQLVVKIRDDD 177

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157
           GE  +L F             G+++ V G ++     + MVHP      + D   P ++ 
Sbjct: 178 GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVLT 236

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            VY    G+S    +K I  AL R P+   LP  I++  LQ    PS+A+A  ++H+P  
Sbjct: 237 PVYPSTAGVSQAYLRKAIDNALERTPLPELLPPEIDRAYLQPLGVPSLAQAVRMLHHPGV 296

Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-----IAQKI 265
             D     + + PA  R+ ++ELLA Q++L    ++ +      +          +  ++
Sbjct: 297 DADEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRAAADADALTTRL 356

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF  T +Q   + +I  D++  + M R+LQGDVGSGKT+VA +A A A++AG QA 
Sbjct: 357 YAALPFKLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAA 416

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTHA+
Sbjct: 417 LMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAI 476

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLV 436
            QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL 
Sbjct: 477 IQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLA 536

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +T   D+D+S I E P GR P+ T ++   R DEVI R++     G++ YW+CP IEE +
Sbjct: 537 MTYYADLDVSTIDELPPGRTPVLTRVVGDARRDEVIARVREAALTGRQVYWVCPLIEESE 596

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
               ++ VE + +L        + ++HGR+S  DK +VMD+F     +LL+ATTVIEVG+
Sbjct: 597 TLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAFTRNDVQLLVATTVIEVGV 656

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL  ++ T 
Sbjct: 657 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYSGPLSIAGRERLKTMRETT 716

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR+ A  ++   PD+ +
Sbjct: 717 DGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIEPAREAAARLIAAYPDVVT 776


>gi|300088038|ref|YP_003758560.1| ATP-dependent DNA helicase RecG [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527771|gb|ADJ26239.1| ATP-dependent DNA helicase RecG [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 824

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/657 (36%), Positives = 366/657 (55%), Gaps = 34/657 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           D+L++ PS  +D      I+E+S     TI   + +  +     RR  + ++ D TG I 
Sbjct: 153 DMLYHFPSRHVDYSRTTPIAELSPGPEQTIVATVWEVRTTTPGGRRSTEAIVGDETGNIR 212

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYS 161
            L+F      L        ++ ++GKI   KN ++   P +    N + V+   +  +Y 
Sbjct: 213 ALWF--NNPYLTRQIHANDRLVLSGKIGVFKNTLVFESPEWEKLENRELVHTGRLAPIYP 270

Query: 162 LPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
           L  GL     +K++ E +    P L E++ +D+  ++   ++ EA    H P    D+E 
Sbjct: 271 LTAGLFPRQMRKLMKEVVDGFAPSLEEYLPEDIRARRDLITLPEAVAQAHFP---DDYEA 327

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
              AR RLA+DEL   Q+ ++  ++ ++    G+P   +  + ++ L ++ F  T +Q  
Sbjct: 328 KDAARSRLAFDELFVLQLGVMARKRAWRLSRPGLPTPTDQSLLKRFLDSLSFQLTAAQRR 387

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           ++ DIL DMS+   M R+LQGDVGSGKT+VA  A   +V AG Q   MAP  ILA+QHY 
Sbjct: 388 SLNDILDDMSRSEAMSRLLQGDVGSGKTVVATAAALMSVAAGYQCAFMAPTEILAEQHYR 447

Query: 340 FIKKYTQ--------------------NTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            +                         +  + V ++ G+   + ++   +RI +G   ++
Sbjct: 448 SVTGMLDILASDRQESAGVTSFLGILPDRPLTVALLIGDAKASGKKLIRDRIRNGDIDLV 507

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           IGTH+L Q S+++ KL L I+DEQHRFGV+QR  L QK   PH+L+MTATPIPRTL LT 
Sbjct: 508 IGTHSLVQKSLKFQKLGLAIIDEQHRFGVEQRQNLRQKGNNPHLLVMTATPIPRTLALTL 567

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
            GD+D+S I E P GR+ I+T  +   +       ++  +   ++A+ ICP +EE +   
Sbjct: 568 YGDLDLSVIDELPPGRQAIRTRWLKPEQRASAYAFIRKQVELKQQAFIICPLVEESEAIQ 627

Query: 500 FRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            R+    +  L  E F    + +IHGRMS  +KESVM +F  G   +L++T VIEVGIDV
Sbjct: 628 ARAATAEYEKLKMEIFPEYRLGLIHGRMSAAEKESVMKAFDQGRLDILVSTPVIEVGIDV 687

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            +A++++IE+A+ FGL+QLHQ RGRVGRG E S C+LL   P S+ +  RLSV++N++DG
Sbjct: 688 PNATVMLIESADRFGLSQLHQFRGRVGRGREQSYCMLLADNP-SEVANARLSVIENSQDG 746

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673
           F +AEEDL+ R  GE  G +QSG+P   +A+  L D  +LE AR +A  +   DP+L
Sbjct: 747 FSLAEEDLRLRGPGEFFGTRQSGLPDLKMAR--LSDVPILEAARAEAMRLFENDPEL 801


>gi|134299934|ref|YP_001113430.1| ATP-dependent DNA helicase RecG [Desulfotomaculum reducens MI-1]
 gi|134052634|gb|ABO50605.1| ATP-dependent DNA helicase RecG [Desulfotomaculum reducens MI-1]
          Length = 685

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 238/672 (35%), Positives = 389/672 (57%), Gaps = 19/672 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDR-HYRPKISEISEE 67
           +++P+   +GVG + +  L ++            DLL++ P  + DR   RP  S  S+ 
Sbjct: 4   IYSPIQYMKGVGPQRAKQLERL------GIFTTWDLLYHFPREYQDRSDIRPAHS-FSQG 56

Query: 68  RIVTITG-YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            + T+ G  I+   S   +     K+ L +G G    ++F +    +K  +  G+++ +T
Sbjct: 57  DLATVKGTVIAAQESKPRRGLSITKLALQEGAGTFYAVWFNQT--YIKKQYPPGKELLIT 114

Query: 127 GKI-KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           GK+ +K     I V  H +    + ++   I  +Y L   L+    + +I   L ++  L
Sbjct: 115 GKVDRKFGVPQIQVTDHEVLEGDEGMHSGRIVPIYPLTESLNQRFLRSLIKTTLEQVGSL 174

Query: 186 P-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             E++   +L + + P + EA   IH P      +    AR R   +EL   ++ + L +
Sbjct: 175 AREFLPDSMLDRYNLPCLPEALREIHFPENQASCQR---ARRRFIMEELFLFELGVNLQK 231

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            +  K++     +E  ++ ++L ++PF  T++Q+   ++I +D+     M R+LQGDVG+
Sbjct: 232 GRILKKVKKHEYIEEALSNRLLMSLPFRLTEAQKRVWREIEEDLKSSFPMNRLLQGDVGA 291

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++A + +  A  +G Q  +MAP  +LA+QH + IK   +   I V ++TG+  +  R
Sbjct: 292 GKTVIAALTLCKAAGSGLQGALMAPTELLAEQHAKGIKDLLEPMGIKVALLTGSGKKG-R 350

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           +K L+ +A G   + IGTHAL  + +QY  L LV+VDEQHRFGV+QR  L  K  AP VL
Sbjct: 351 KKTLDALASGDIQVAIGTHALISEDVQYKNLGLVVVDEQHRFGVRQRAALQDKGVAPDVL 410

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL LT  GD+D+S I + P GR+ IKT  + + +  + +  +K  ++EG++
Sbjct: 411 VMTATPIPRTLALTLYGDLDVSIIDQLPPGRQGIKTHHVGLAQAGKAVGLIKQQITEGRQ 470

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           AY +CP +EE ++ + ++ VE    L +     SI ++HGRM   +KE VM+ F+ GT  
Sbjct: 471 AYVVCPLVEESEKIDTQAAVELHGRLQKALVDCSIGLLHGRMKTQEKELVMNEFRKGTID 530

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LL++TTVIEVG+DV +A+ ++I +A+ FGLAQLHQLRGRVGRG   S CIL+   P ++ 
Sbjct: 531 LLVSTTVIEVGVDVPNATAMVIWDAQRFGLAQLHQLRGRVGRGSHQSYCILVGD-PTTRE 589

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  R++ +  T+DGF++AEEDLK R  GE  G +QSG+P+F IA    +   +E A+K+A
Sbjct: 590 AKERMAAMCRTQDGFVLAEEDLKLRGPGEFFGTRQSGLPEFKIADLIRNGKEIEQAKKEA 649

Query: 664 KHILTQDPDLTS 675
           + +L+ +PDL S
Sbjct: 650 EALLSLNPDLRS 661


>gi|296161047|ref|ZP_06843858.1| ATP-dependent DNA helicase RecG [Burkholderia sp. Ch1-1]
 gi|295888746|gb|EFG68553.1| ATP-dependent DNA helicase RecG [Burkholderia sp. Ch1-1]
          Length = 810

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 246/644 (38%), Positives = 364/644 (56%), Gaps = 29/644 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I  +    I    G +  +      +R+    L +D  
Sbjct: 137 TRDIDLVLHLPMRYEDETSLTPIGHLLPGGIAQTEGVVFDNEIAYRPRRQLLVKLRDDAG 196

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G ++ V G ++     + MVHP        D + PL +A
Sbjct: 197 DELVLRFLNFYGSQVKQMAI-GARLRVRGDVRGGFFGMEMVHPAV---RVVDEDTPLPQA 252

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G++    +K I  ALSR  LP +LPE + +  L+    PS+ +A   +H+P
Sbjct: 253 LTPVYPSTAGVTQAYLRKSIDNALSRTSLPELLPEPVARTWLEPLGVPSLMDAVRTLHHP 312

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIP---INVEGKIAQ 263
               D     + T PA  R+ ++ELLA Q++L      ++ +    +P   +  E  +  
Sbjct: 313 GVQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHEERRTRAAPAMPRRKLGDESALVA 372

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++L+ +PFS T +QE    +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 373 RLLKALPFSLTAAQERVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAALAAAQAIDAGYQ 432

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTH
Sbjct: 433 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTREKRAAIEAAALGTAQLVIGTH 492

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV QRL L  KA           PH L+M+ATPIPRT
Sbjct: 493 AIIQDAVEFARLGLVIVDEQHRFGVAQRLALRAKAQNAADGARDFQPHQLMMSATPIPRT 552

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R +EVI R++     G++ YW+CP IEE
Sbjct: 553 LAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTGRQVYWVCPLIEE 612

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L       ++ ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 613 SETLQLQTAVETYETLVAALPELNVGLVHGRLAPAEKAAVMDAFTRNEVQLLVATTVIEV 672

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS  +  RL  ++ 
Sbjct: 673 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARARLQTMRE 732

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 733 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDQWLIE 776


>gi|284929234|ref|YP_003421756.1| ATP-dependent DNA helicase RecG [cyanobacterium UCYN-A]
 gi|284809678|gb|ADB95375.1| ATP-dependent DNA helicase RecG [cyanobacterium UCYN-A]
          Length = 813

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 247/655 (37%), Positives = 379/655 (57%), Gaps = 29/655 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99
           DLLFY+P  +I+   +  IS I E   VTI G + + + F   K +   IL   + D TG
Sbjct: 151 DLLFYYPRDYINYARQVTISNIKEGETVTIIGRVKRCNFFTSSKNKKLSILELVVQDHTG 210

Query: 100 EITLLFFYRKTEMLKNVFFEGRK--------ITVTGKIKK------LKNRIIMVHPHYIF 145
           EI L  F+         + E +K        I V+G +K+      L N  I V     F
Sbjct: 211 EIKLNRFFSGNRFTNKGWQEKQKRQYIRSTVIAVSGLVKQNRYGLTLDNLEIEVLDD--F 268

Query: 146 HNS-QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
           ++S +  N   I  VYSL  G+  +L +KII+  L     + + +   L  K     + +
Sbjct: 269 NSSIESWNIGRILPVYSLTEGIDNNLIRKIIISNLKSAKTILDPLPILLKSKYDLIDLKD 328

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK--KEIGIPINVEGKIA 262
           A   IH P      ++   AR RL +DE    Q+  L  R++ K  K I         + 
Sbjct: 329 ALINIHFP---TSLDFLERARRRLIFDEFFYLQLGFLKRRQERKVLKTIN-SFTPNRYLT 384

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            +  + +PF  TKSQ   I +I++D+     M R+LQGDVGSGKT+VA+ A+   +E+G 
Sbjct: 385 HQFNKLLPFELTKSQRRVINEIIKDLDSLQSMNRLLQGDVGSGKTIVAIFAILTTLESGY 444

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  +MAP  +LA+QHY  I  Y     + VE++TG+  ++ R +   ++  G+  +++GT
Sbjct: 445 QVALMAPTEVLAEQHYNKIVLYFNQLYLSVELLTGSTKKSKRNEIYRQLLTGELPLLVGT 504

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           HAL Q+ I++ KL LVI+DEQHRFGV+QR +L  K  +PHVL MTATPIPRTL LT  GD
Sbjct: 505 HALIQEPIKFKKLGLVIIDEQHRFGVEQRTRLLNKGKSPHVLSMTATPIPRTLALTLHGD 564

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +DIS+I E P GRK I+T ++  N+  +  E +   + +G++AY + P IEE ++ + ++
Sbjct: 565 LDISQIDELPPGRKAIETKVLIGNQKQKAYELINQEVIQGRQAYIVFPMIEESEKLDIKA 624

Query: 503 VVERFNSLH-EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            +E    L  E F S SI ++HGR++ ++K  V++ F++   +++++TTVIEVG+D+ +A
Sbjct: 625 AIEEHKKLSKEIFPSFSIGLLHGRLNALEKNKVLNDFRDNKYQIMVSTTVIEVGVDIPNA 684

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           ++++IENAE FGL+QLHQLRGRVGR    S C L+     + N+  +L+VL+ ++DGF I
Sbjct: 685 TVMLIENAERFGLSQLHQLRGRVGRSSFSSYCFLITSTK-TPNTLEKLNVLEQSQDGFFI 743

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           +E DLK R  G ILG +QSG+P F +A    +  +LE+++  A+ I++ D  L S
Sbjct: 744 SEMDLKLRGPGTILGTRQSGLPDFALASLADNKEILELSKLIAEKIISSDIKLNS 798


>gi|33862854|ref|NP_894414.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
           9313]
 gi|33634770|emb|CAE20756.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9313]
          Length = 846

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 244/696 (35%), Positives = 386/696 (55%), Gaps = 49/696 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PLS  +G+G K +  L+ +      +  +      Y+P  ++D     +I  +    
Sbjct: 147 LESPLSEVKGIGPKLAERLAGLGLLLVKDLLQ------YYPRDYVDYSSLRRIQALEAGE 200

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFE------ 119
             TI   + +   F   +     IL   L D TG + +  F+         + +      
Sbjct: 201 AATIVATVRRCHGFTSPRNPNLSILELQLQDPTGRLKVRRFFAGRRFSSPAYLKSQSRLY 260

Query: 120 --GRKITVTGKIK------KLKNRII--MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVD 169
             G  + V+G +K        ++ +I  M  PH     SQ +   L   VY+L  GL+ D
Sbjct: 261 PPGVTVAVSGLVKGGPYGMSFQDPLIEVMESPHSPL-RSQSIGRLL--PVYALTEGLTAD 317

Query: 170 LFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
            F+ ++++ L      PE + +   Q    P  ++A   IH+P    D +    AR RL 
Sbjct: 318 RFRDLVLQILPLAASWPESLPEQRRQVLRLPRRSDALVAIHHP---DDQQTLQSARRRLV 374

Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGK---IAQKILRNIPFSPTKSQESAIKDILQ 286
           +DE L  Q+ LL  R + ++     +   G+   +  + L  +PF  T +Q+  + +I  
Sbjct: 375 FDEFLLLQLGLLKRRAELRRCSAPVLQTAGRRDGLVARFLELLPFPLTAAQQRVLTEIEA 434

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           D+     M R++QGDVGSGKT+VA+ A+  AVEAG Q   MAP  +LA+QHY  +  +  
Sbjct: 435 DLVLSEPMARLIQGDVGSGKTVVAIAALLTAVEAGWQGAFMAPTEVLAEQHYRTLCCWLP 494

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              + VE++TG   +  RR+ L+ + +G   I++GTHAL +D + + +L LV+VDEQHRF
Sbjct: 495 QLHVSVELLTGATTRIRRRQILDDLVNGSLKILVGTHALIEDPVAFSRLGLVVVDEQHRF 554

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV+QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI+T +I   
Sbjct: 555 GVKQRNRLLNKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIQTQMIRGC 614

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS------SIAI 520
             D+  + ++  +S G++AY + P IE+ ++ + RS V+    +H H +       ++ +
Sbjct: 615 DRDQAYQLIRDQVSRGQRAYVVLPLIEDSEKLDLRSAVK----VHAHLSEQVFEEFTVGL 670

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGR+S  +K+ V+ SF  G C++L++TTV+EVG+DV  AS+++I++A+ FGLAQLHQLR
Sbjct: 671 LHGRLSSSEKQGVIQSFAAGDCQVLVSTTVVEVGVDVPQASVMVIDHADRFGLAQLHQLR 730

Query: 581 GRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           GRVGRG   S C+L+     PL++    RL VL  + DGF IAE DL+ R  G++LG KQ
Sbjct: 731 GRVGRGAAASHCVLINDSTNPLARQ---RLEVLVRSSDGFEIAEIDLRLRGPGQVLGTKQ 787

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           SG+P   +A      ++LE AR +A+ +L++DP+LT
Sbjct: 788 SGLPDLALASLADDGAVLEEARDEAQRLLSEDPNLT 823


>gi|282882055|ref|ZP_06290696.1| ATP-dependent DNA helicase RecG [Peptoniphilus lacrimalis 315-B]
 gi|281298085|gb|EFA90540.1| ATP-dependent DNA helicase RecG [Peptoniphilus lacrimalis 315-B]
          Length = 674

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/646 (36%), Positives = 369/646 (57%), Gaps = 33/646 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ------LQKRRPYK----- 91
           DLL+++P  + D     K+SE          G I + S+F+      L  R   K     
Sbjct: 31  DLLYFYPRRYEDSSKILKLSE----------GIIGEKSTFRCRILSLLDNRNLRKGLSIT 80

Query: 92  -ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150
             L+ D + E  L+FF      +KN    G    + GK ++ + RI +  P  I      
Sbjct: 81  SFLIEDDSAEAKLIFF--NNRFIKNTIDFGETYLIYGKYERFRGRIQLTSPE-IEKVDNI 137

Query: 151 VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH 210
            N   I  +Y+   GL+ +    +I + + +  +  E I  DL++K S     +A   IH
Sbjct: 138 RNLGRIRGIYNQTKGLTNNNIDYLIDQVIDK-NLFEECIPNDLIKKYSLIDKNKAIKNIH 196

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            P   K +   + +++RL Y+ELL  ++++L M+ +     GI  N+  KI +  + N+P
Sbjct: 197 RPENRKSY---ALSKQRLIYEELLFFELSILSMQNKNNSSHGIKFNIPNKIYE-FINNLP 252

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  QE  +KDI  DM     + R++QGDVGSGKT+V++I    AV  G Q  IMAP 
Sbjct: 253 YKLTSGQEKVLKDITGDMQNGKSVNRLIQGDVGSGKTIVSIILSLVAVLNGYQCAIMAPT 312

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA+QH+E      ++  + ++++ G+ P   +++ L   A+G   I+IGTH+L +D +
Sbjct: 313 EILAKQHFENFNSLLEDYGVRIKLLVGSTPSKVKKEILTNTANGMIDILIGTHSLIEDDV 372

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +++ L L ++DEQHRFGV QR KL  K      ++M+ATPIPRTL L    D+DIS I  
Sbjct: 373 KFFNLGLNVIDEQHRFGVIQRSKLRYKNDKACNIIMSATPIPRTLSLILYADLDISIIDT 432

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNS 509
            P GRK IKT+ I  ++++E +  ++  L+ G +AY IC  IE+ ++  N  SV + F  
Sbjct: 433 MPGGRKNIKTLAINSSQVNEALTFIEKELNAGHQAYVICSLIEDNEDFENLESVEKVFKD 492

Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L + F +  +A++HGR+S  +K  VM+ FKN    L+++TTVIEVGI+V +A++++I NA
Sbjct: 493 LKKFFKNYKLALLHGRLSTDEKNKVMEDFKNRKIDLIVSTTVIEVGINVANATVMMIYNA 552

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E FGL+ LHQLRGRVGRG+  S CI L++   S+ S+ R+ ++ ++ DGF IA +DL+ R
Sbjct: 553 ERFGLSTLHQLRGRVGRGDAQSYCI-LFNNSKSEISWRRMKIMTDSTDGFYIANKDLELR 611

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
             G+ILG++QSG+P   +A P     +L  A  DAK+IL +D DLT
Sbjct: 612 GFGDILGVRQSGIPNLRLANPLKDQKILSYASTDAKNILKEDIDLT 657


>gi|88608747|ref|YP_506567.1| ATP-dependent DNA helicase RecG [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600916|gb|ABD46384.1| ATP-dependent DNA helicase RecG [Neorickettsia sennetsu str.
           Miyayama]
          Length = 675

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/630 (36%), Positives = 346/630 (54%), Gaps = 13/630 (2%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG-YISQHSSFQLQKR--RPYKILLN 95
           +R +DLL + P  F++R     I+   E   VTI   Y      F   +R  R +K    
Sbjct: 29  SRVVDLLLHKPRGFVNRCNFKAIANSVEGEFVTIEARYEGSKEHFHRSRRVKRLHKFFFK 88

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL 155
           D   +   + F+ KT + + +   G    + G++        M HP  I   S+      
Sbjct: 89  DKNEDSLEVIFFTKTYLQRKLKV-GEWYLINGRMGVSAQ---MFHPDKILKLSERDKLSA 144

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
            E  Y L  G++   F  ++   L       EW+E+  ++K+   S  +A   +H+P   
Sbjct: 145 FEPKYRLSDGITNYQFLSLVDSLLKSSKPPKEWLEQTSVRKRGLISWGKAIEQLHHPSSE 204

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
            +FE    A +RLAYDE+LA  +    +  Q   +   PI  +G+I   +   +PFS T+
Sbjct: 205 VEFE---QACKRLAYDEILAMHLVNNSLHTQVLNQKKEPIKGDGRITALLRSRLPFSLTE 261

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            QE  IK I     Q  RM+ +LQGDVGSGKTLV + AM  AVE G Q V+++P  +LA+
Sbjct: 262 GQEEVIKKIYALQGQDVRMVALLQGDVGSGKTLVVIFAMLNAVEVGKQVVLLSPTIVLAK 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QH+E ++K     + +  ++TG      R + L+ I  G A +I+ THA+    I ++ L
Sbjct: 322 QHFEVLQKLLPELKPV--LLTGEKIACSREQFLQDIRSGDAKVIVATHAILAVGILFFDL 379

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L+++DEQHRFG  QR KL ++     ++L++ATPIPRT+     G I +  + EKP  R
Sbjct: 380 GLLVIDEQHRFGANQRTKLIRENPGADLVLVSATPIPRTIGQVLFGSITLLNLREKPKSR 439

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             + T  +  ++I ++IER+KV+L +G K +WICP IEE +     SV ERF  L +HF 
Sbjct: 440 PVVTTSTVTKSKIAKLIERIKVILGKGSKVFWICPVIEESENLKVISVTERFRLLKKHFA 499

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +  +HG +S    E  + +F+NG  K+L+ATTV+EVG+D+ D  +I+IE+A+HFGLAQ
Sbjct: 500 DEVDCVHGVLSAQKMEEKLTAFRNGKTKILLATTVVEVGVDIPDVDVIVIEDADHFGLAQ 559

Query: 576 LHQLRGRVGRGEEISSCILLYHP-PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           LHQLRGRVGRG + S CILLY    +++N   RL +L+ + DGF IAEED K R  G+I 
Sbjct: 560 LHQLRGRVGRGNKKSFCILLYDSQKITENGKKRLKILRESSDGFFIAEEDFKLRGVGDIF 619

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G++QSG  KF         S  + A  +A+
Sbjct: 620 GVRQSGFYKFKFLDRPFEHSFFDSASMEAQ 649


>gi|325263998|ref|ZP_08130731.1| ATP-dependent DNA helicase RecG [Clostridium sp. D5]
 gi|324031036|gb|EGB92318.1| ATP-dependent DNA helicase RecG [Clostridium sp. D5]
          Length = 686

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 241/674 (35%), Positives = 379/674 (56%), Gaps = 24/674 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEERI 69
           + +ST +G+G+K      K      A      DLL Y+P  + D +  P  + E  E + 
Sbjct: 5   SKISTLKGIGEKTQALFEK------AGVRTIGDLLRYYPRGY-DVYDDPVLVGEAVEGKT 57

Query: 70  VTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            T+TG I      QL   R  ++    + D TG + +++F  +   LKN    G  IT+ 
Sbjct: 58  ATVTGAI--FGRVQLGGSRNMQVTTLYVKDLTGTLKVIWF--RMPFLKNTLARGGIITLR 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           G+I + ++ ++M HP   + +++ +     ++ VY L  GL+ +  KK +++A+  L + 
Sbjct: 114 GRIVRKRDGLVMEHPEIFYPSAKYEEKRNTLQPVYPLTAGLTNNAVKKAMMQAMEYLDLK 173

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E++ +++  +        A   IH P   ++F     ARERL ++E L   ++L  ++ 
Sbjct: 174 QEFLPEEIRMRYHLAEYNYAVRGIHFPETKEEF---YHARERLVFEEFLIFILSLRKLKT 230

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           +  K       VE     K L ++P+  T +Q+    ++ +DMS  + M R++QGDVGSG
Sbjct: 231 REDKTENCFKFVERPEIDKFLESLPYELTNAQKKVWNEMKRDMSGPHVMSRLVQGDVGSG 290

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV--EIITGNMPQAH 363
           KT+VAL+ +  A   G Q  +MAP  +LA+QHYE I    +   I +  E++TG+M    
Sbjct: 291 KTIVALLGLMYAGLNGFQGAMMAPTEVLAKQHYENITSMFEKYGIPLKTELLTGSMSAKE 350

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R+A ERI+ G A II+GTHAL Q+   Y  L LV+ DEQHRFGV+QR  L  K   PH+
Sbjct: 351 KREAYERISSGAADIIVGTHALIQEKAVYRNLALVVTDEQHRFGVKQRETLAGKGQMPHI 410

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL +   GD+DIS I E P+ R PIK  ++     +     ++  + EG+
Sbjct: 411 LVMSATPIPRTLAIILYGDLDISVIDELPSNRLPIKNCVVDTGYRNTAYRFMQKQVEEGR 470

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y ICP +E+ +     +V++    L E       I+ +HG+M   +K+ +M++F    
Sbjct: 471 QCYVICPMVEDSEHLEAENVMDYTQLLKEALGERFGISYLHGKMKQAEKDEIMEAFGKNE 530

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVGIDV +A++++IENAE FGLAQLHQLRGRVGRG+  S CI +     S
Sbjct: 531 IQILVSTTVIEVGIDVPNATVMLIENAERFGLAQLHQLRGRVGRGKYQSYCIFM-SASKS 589

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           K +  RL +L  + DGF IA EDL+ R  G++ GI+QSG+  F +        +L+ A +
Sbjct: 590 KETKERLEILNKSNDGFFIASEDLRLRGPGDLFGIRQSGLLDFSLGDVFQDSKILQKANE 649

Query: 662 DAKHILTQDPDLTS 675
            A  +L +DP+LT 
Sbjct: 650 AALELLEKDPELTD 663


>gi|238026276|ref|YP_002910507.1| ATP-dependent DNA helicase RecG [Burkholderia glumae BGR1]
 gi|237875470|gb|ACR27803.1| ATP-dependent DNA helicase RecG [Burkholderia glumae BGR1]
          Length = 803

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 249/659 (37%), Positives = 373/659 (56%), Gaps = 27/659 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I E+    +    G +  +      +R+    L +D  
Sbjct: 134 TRSIDLVLHLPMRYEDETTLTPIRELLPGEVAQTEGVVYDNEITYRPRRQLLVKLRDDDG 193

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G I+     + +VHP        D N PL +A
Sbjct: 194 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDIRGGFFGLEIVHPAV---RVVDENTPLAQA 249

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  +    LQ    P++A+A   +H+P
Sbjct: 250 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEVAAAYLQPLGVPTLADAVRQLHHP 309

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG------IPINVEGKIA 262
               D     + T PA  R+ +DELLA Q++L    ++ +           P +  G +A
Sbjct: 310 AVDDDETALIDGTHPAWIRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRAPADA-GSLA 368

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            ++L  +PF+ T +Q   + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG 
Sbjct: 369 ARLLAALPFALTGAQARVVDEISHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGY 428

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGT
Sbjct: 429 QAALMAPTEILAEQHARKLRGWLEPLGVTVAWLAGSLKAKDKRAAIEAAALGTAQLVIGT 488

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-----PHVLLMTATPIPRTLVL 437
           HA+ QDS+++ +L LVIVDEQHRFGV QRL L  KA       PH L+M+ATPIPRTL +
Sbjct: 489 HAIIQDSVEFARLGLVIVDEQHRFGVAQRLALRAKAGGPAGFQPHQLMMSATPIPRTLAM 548

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           T   D+++S I E P GR PI T ++   R +EVI R++     G++ YW+CP IEE + 
Sbjct: 549 TYYADLEVSTIDELPPGRSPIVTKLVGDARREEVIARVRDAALGGRQVYWVCPLIEESET 608

Query: 498 SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              ++ VE + +L        + ++HGR++  +K +VM++F     +LL+ATTVIEVG+D
Sbjct: 609 LQLQTAVETYETLVAALPGIQVGLVHGRLAPAEKAAVMEAFSRNEVQLLVATTVIEVGVD 668

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +AS+++IE+AE FGLAQLHQLRGRVGRG   S+C+L+Y  PLS     RL  ++ T D
Sbjct: 669 VPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASACVLMYSGPLSIAGRERLKTMRETND 728

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           GF IA  DL+ R  GE LG +QSG      A  E    L+E AR+ A  ++ + PD+ +
Sbjct: 729 GFEIARRDLEIRGPGEFLGARQSGAAMLRFADLERDGWLIEPAREAAGVLIARYPDVVT 787


>gi|240080014|ref|ZP_04724557.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA19]
 gi|268596156|ref|ZP_06130323.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA19]
 gi|268549944|gb|EEZ44963.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA19]
          Length = 680

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPRLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LRGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKPKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662


>gi|289578495|ref|YP_003477122.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter italicus Ab9]
 gi|289528208|gb|ADD02560.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter italicus Ab9]
          Length = 681

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 251/674 (37%), Positives = 389/674 (57%), Gaps = 22/674 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL   +   +GVG K +  L K+            DLLFY P  + +R    KI +++  
Sbjct: 2   PLNLDIQYVKGVGPKRAKLLKKL------GIQTVEDLLFYFPKDYENRSSILKIEDLTVG 55

Query: 68  RIVTITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              T  GYI       +  K    K+ + DGTG + L+++ +    +KN    G +  + 
Sbjct: 56  EKQTFKGYIVGSPREIKTSKVIITKVPVKDGTGAVELVWYNQ--PYIKNSLKIGEEYIIN 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   + 
Sbjct: 114 GKLRFKYGQLIVENP--VIEKSEDFKLNTGRIVPIYGLTEGLTQNAIRKIMFNALKEYVQ 171

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + E+ +++ L +K    I  A   I+ P+      +   A+ R  Y EL   Q+AL LM
Sbjct: 172 EVEEFFDEEFLSEKRLMDIKNALININFPQNE---AYLEQAKYRFKYQELFLLQMALFLM 228

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +   K++ GI    E    +  +  +PF  T++Q   +K+I+ DM+    M R++QGDVG
Sbjct: 229 KGSAKEKKGIKF--ERVDLKPFIMGLPFKLTQAQVKVLKEIIADMNSHKVMNRLVQGDVG 286

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  ++
Sbjct: 287 SGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYSTLKELFKNTDIKIGLLSGSLSPSN 346

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +++ LE+I  G   II+GTHAL +D + +  L L I DEQHRFGV+QR  LTQK   P V
Sbjct: 347 KKEVLEKIKKGDYDIIVGTHALIEDDVVFNNLGLCITDEQHRFGVRQRALLTQKGKNPDV 406

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +G+
Sbjct: 407 LVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGR 466

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y +CP IEE  + +  S    +  +++     + + ++HG+M+D +KE V++ F NG 
Sbjct: 467 QVYVVCPLIEESDKISAMSAEIVYREIYKDAFKEAKVGLLHGKMADSEKEKVIEEFVNGK 526

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGR E  S CIL+ +   S
Sbjct: 527 IDILVSTTVIEVGVNVPNATVMIIENAERFGLAQLHQLRGRVGRSEFQSYCILISYSN-S 585

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
             +  RL VL  T DGF IAE+DL+ R  GE LG++Q G+P+F IA       +L+I +K
Sbjct: 586 DVAKKRLGVLAQTSDGFKIAEKDLEIRGPGEFLGLRQHGLPEFKIANIVEDIDILKIVQK 645

Query: 662 DAKHILTQDPDLTS 675
           D + ++ +DP L +
Sbjct: 646 DVEELVKKDPKLEN 659


>gi|42523773|ref|NP_969153.1| ATP-dependent DNA helicase RecG [Bdellovibrio bacteriovorus HD100]
 gi|39575980|emb|CAE80146.1| ATP-dependent DNA helicase RecG [Bdellovibrio bacteriovorus HD100]
          Length = 701

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 233/654 (35%), Positives = 378/654 (57%), Gaps = 15/654 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK--RRPYKILLNDGTGE 100
           DL  ++P ++ D+     IS +  + IV+I   +    S  + +  R+ Y +L+ D +G+
Sbjct: 39  DLFEFYPRAYEDQRAARNISSLRPDDIVSIKATVVAVHSVNMGRSARKMYDVLVRDASGQ 98

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF----HNSQDVNFPLI 156
           I   +F    +     F    ++ V GK+ + + R+   HP          +QD   PL 
Sbjct: 99  IHCKYFRVPYKGYFERFKPFTEVRVVGKVTEYRGRLEFHHPDIKDVEPDEETQDALIPL- 157

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPE-WIEKDLLQKKSFPSIAEAFNIIH--NPR 213
              Y+   GL+     K++  A +++   PE    K + +K +     +A   IH  +P 
Sbjct: 158 ---YTEIEGLATAKIMKLVRSAFAQIEEWPEEAFPKWMREKYNLIPRKDALKDIHFPDPN 214

Query: 214 KAKDF-EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
           KAK + E+ + A++R+ +DE    ++ L   +  F+KE    I   G+  + +L+++PF 
Sbjct: 215 KAKQYSEFKTAAQKRIIFDEFFWLELYLASKKAGFQKEGAPQIRNSGEKMRALLQSLPFE 274

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T +Q+    +I  D+ + + M R++QGDVGSGKTLV+ +A   A E+G Q+ +MAP  I
Sbjct: 275 MTGAQKRVFTEIKADLEKGHPMHRMVQGDVGSGKTLVSFMAAIYAAESGYQSCLMAPTEI 334

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QH++  +K  +   I + ++ G    + R++ L  +  G+  +IIGTHAL +D +Q+
Sbjct: 335 LAEQHFKNARKVLEPLGIRLGLLVGKSKASERKQLLAALGAGEIDLIIGTHALIEDEVQF 394

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             L LVI+DEQHRFGV+QR  L  K  +PH L+MTATPIPRTL +T  GD+D+S I E P
Sbjct: 395 ANLGLVIIDEQHRFGVEQRGVLKNKGNSPHFLVMTATPIPRTLAMTVYGDLDVSIIDEMP 454

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           AGR PI+T     ++  + ++ +   + +G++AY + P +EE ++ + +  V  +  L E
Sbjct: 455 AGRSPIQTRATFESKRPQALQFMLEQIQKGRQAYIVYPLVEESEKIDLKDAVSEYEKLKE 514

Query: 513 HFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            +    I ++HG+M   +K+ VMD F+    ++L++TTVIEVG+DV +A+I+IIE+AE F
Sbjct: 515 LYPQLKIGLLHGKMKPDEKDQVMDQFRKNEIQVLVSTTVIEVGVDVPNANIMIIEHAERF 574

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+QLHQLRGRVGRGE  S CIL+    +S+    R  +++ T DGF IAE DL+ R  G
Sbjct: 575 GLSQLHQLRGRVGRGEHKSFCILIMGYAVSEEGKARTEMMEKTTDGFKIAEFDLEMRGPG 634

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           E +G KQSG+  F +A      ++L+ AR+ A  +L +DP L+ V  Q ++  L
Sbjct: 635 EFMGTKQSGLSGFKLANLVRDMAILQEAREAAFEVLRKDPRLSYVENQGLKAEL 688


>gi|33865627|ref|NP_897186.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 8102]
 gi|33632797|emb|CAE07608.1| ATP-dependent DNA helicase [Synechococcus sp. WH 8102]
          Length = 836

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 245/696 (35%), Positives = 386/696 (55%), Gaps = 47/696 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PL+  +GVG K +  L+ I            DLL ++P   +D   R +I  +    
Sbjct: 137 LDSPLTQLQGVGPKLAGRLAAI------GLLLVRDLLKHYPRDHVDYATRRRIEALVVGE 190

Query: 69  IVTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFF-----YRKTEMLKN---V 116
             TI   I + + F +  R P     ++ L D TG I +  F     +     LK    +
Sbjct: 191 TATIVATIRRCNGF-VSPRNPNLSILELQLQDPTGRIKVTRFLAGKRFSSPAYLKGQQRL 249

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-----NFPLIEAVYSLPTGLSVDLF 171
           + +G  + V+G IK+         P      S +      N   +  VY L  G++ D F
Sbjct: 250 YPQGATVAVSGLIKEGPYGATFQDPLIEVLESSNAEVRSRNIGRLMPVYGLTEGVAADRF 309

Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
           +++I + L      P+ + +   +  S  S+ EAF  +H P    D      AR RL +D
Sbjct: 310 RQLIDQVLPLARAWPDPLNQTERRDWSLVSLPEAFQGLHAP---DDPSQLDQARRRLVFD 366

Query: 232 ELLAGQIALLLMRKQFKKEIGIP----INVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           E L      LL R++   +   P    I     +  K L ++PF+ T +QE    +I  D
Sbjct: 367 EFLL-LQLGLLRRRRTLSQRPCPQLELIRRGDGLVGKFLASLPFAFTAAQERVFGEIEAD 425

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           + +   M R++QGDVGSGKT+VA+ A+ + + +G Q  +MAP  +LA+QH+  + ++   
Sbjct: 426 LQRSQPMARLVQGDVGSGKTVVAIAALLSTISSGWQGALMAPTEVLAEQHHRNLCRWLPP 485

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + VE++TG  P+  RR+ L+ +A+G   +++GTHAL +D + + +L LV+VDEQHRFG
Sbjct: 486 LHVTVELLTGATPKTKRRQLLDDLANGSLKVLVGTHALLEDPVVFSRLGLVVVDEQHRFG 545

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           V QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI+T ++   +
Sbjct: 546 VHQRDRLLNKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIRTAMLTAAQ 605

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS------SIAII 521
             +  E ++  ++ G++AY + P +EE ++   RS VE    +H    S      ++ ++
Sbjct: 606 RSQAYELIREEVARGQRAYVVLPLVEESEKLELRSAVE----VHAELASEVFPELTLGLL 661

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HGR++  DK+SV+  F +G  ++L++TTV+EVG+DV +AS+++I++AE FGLAQLHQLRG
Sbjct: 662 HGRLNSADKQSVLRDFADGRSQVLVSTTVVEVGVDVPEASVMVIDHAERFGLAQLHQLRG 721

Query: 582 RVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           RVGRG   S C+L+     PL++    RL VL  + DGF IAE DL+ R  G++LG +QS
Sbjct: 722 RVGRGAAASHCLLINGSSNPLARQ---RLDVLVCSNDGFEIAEMDLRLRGPGQVLGTRQS 778

Query: 640 GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           G+P   +A      ++LE AR  A+ ++ QDPDL++
Sbjct: 779 GLPDLALASLADDGAVLEDARAAAQQLMEQDPDLSA 814


>gi|329905130|ref|ZP_08274049.1| ATP-dependent DNA helicase RecG [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547690|gb|EGF32475.1| ATP-dependent DNA helicase RecG [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 699

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 250/652 (38%), Positives = 361/652 (55%), Gaps = 29/652 (4%)

Query: 42  IDLLFYHPSSFIDRHYRPKISEIS--EERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           +DL+ + P  + D      I + S    + V + G I+     Q + RR   + L D TG
Sbjct: 35  MDLVLHLPMRYEDETRIVLIRDASFMGGQSVQVEGMITA-CEVQYKPRRQLVVTLADETG 93

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEA 158
           ++TL F       LK +  EG ++   G+++       MVHP Y     +    P+ +  
Sbjct: 94  QVTLRFLNFYGSQLKQMA-EGNRVRARGELRHGFFGPEMVHPLYKM-VLEGAPLPMALTP 151

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEW---IEKDLLQKKSFPSIAEAFNIIHNPRKA 215
           VY    GL     +K I  A++R+     W   +   L++     S   A  ++HNP   
Sbjct: 152 VYPSGDGLPQTYLRKAIASAMARI----SWRDTLAPALVESLDLMSFEAAVRLLHNPPPE 207

Query: 216 KDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
            D     + + PA  R+ +DELLA Q++L   +   + +   P+ V G ++    R +PF
Sbjct: 208 VDESALEDRSHPAWVRMKFDELLAQQLSLKRAQVARRAKGAAPLPVIGALSLAFQRVLPF 267

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
           + T +Q+  +  I  D+     M R+LQGDVGSGKT+VA +A A A+++G QAV+MAP  
Sbjct: 268 ALTGAQQRVLDQIRHDLQAPFPMQRLLQGDVGSGKTVVAALAAAQAIDSGFQAVLMAPTE 327

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA QH+  I  + +   I V  +TG++ +  +  A ERI  G A ++IGTHAL QD + 
Sbjct: 328 ILADQHFRKIAGWLEPLGIEVVWLTGSLKKKDKLAAKERIEAGTAQLVIGTHALIQDDVV 387

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATA-----------PHVLLMTATPIPRTLVLTSL 440
           + +L LVIVDEQHRFGV QRL L  K              PH L+M+ATPIPRTL +T  
Sbjct: 388 FARLGLVIVDEQHRFGVGQRLTLRNKGLGLSNGIDPTQIVPHQLMMSATPIPRTLAMTYY 447

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D+++S I E P GR PI T +I  NR DEVIER+ V   EG++AYW+CP IEE +    
Sbjct: 448 ADLEVSVIDELPPGRTPIVTRVIDQNRRDEVIERVHVAALEGRQAYWVCPLIEESEALQL 507

Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           ++  +   +L        + ++HGR+   +K++VMD+F     ++L+ATTVIEVG+DV +
Sbjct: 508 QTATDTHATLSAALPDLQVGLVHGRLKPQEKQAVMDAFTRAEIQVLVATTVIEVGVDVPN 567

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           AS+++IE+AE  GL+QLHQLRGRVGRG   S C+LLY  PL + +  RL  ++ T DGF 
Sbjct: 568 ASLMVIEHAERSGLSQLHQLRGRVGRGSAASVCLLLYQSPLGQVAKQRLGTMRETTDGFE 627

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  +L  DP
Sbjct: 628 IARRDLQIRGPGEFLGARQSGQAMLRFADLETDQWLVEQARTVAIDLLRDDP 679


>gi|91781857|ref|YP_557063.1| ATP-dependent DNA helicase RecG [Burkholderia xenovorans LB400]
 gi|91685811|gb|ABE29011.1| ATP-dependent DNA helicase RecG [Burkholderia xenovorans LB400]
          Length = 768

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 246/644 (38%), Positives = 363/644 (56%), Gaps = 29/644 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I  +    I    G +  +      +R+    L +D  
Sbjct: 95  TRDIDLVLHLPMRYEDETSLTPIGHLLPGGIAQTEGVVFDNEIAYRPRRQLLVKLRDDAG 154

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G ++ V G ++     + MVHP        D + PL +A
Sbjct: 155 DELVLRFLNFYGSQVKQMAI-GARLRVRGDVRGGFFGMEMVHPAV---RVVDEDTPLPQA 210

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G++    +K I  ALSR  LP +LPE + +  L+    PS+ +A   +H+P
Sbjct: 211 LTPVYPSTAGVTQAYLRKSIDNALSRTSLPELLPEPVARTWLEPLGVPSLMDAVRTLHHP 270

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG--IP---INVEGKIAQ 263
               D     + T PA  R+ ++ELLA Q++L    ++ +      +P   +  E  +  
Sbjct: 271 GVQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHEERRTRAAPAMPRRKLGDESALVA 330

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++L+ +PFS T +QE    +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 331 RLLKALPFSLTAAQERVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAALAAAQAIDAGYQ 390

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTH
Sbjct: 391 AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTREKRAAIEAAALGTAQLVIGTH 450

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV QRL L  KA           PH L+M+ATPIPRT
Sbjct: 451 AIIQDAVEFARLGLVIVDEQHRFGVAQRLALRAKAQNAADGARDFQPHQLMMSATPIPRT 510

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R +EVI R++     G++ YW+CP IEE
Sbjct: 511 LAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTGRQVYWVCPLIEE 570

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 571 SETLQLQTAVETYETLVAALPELKVGLVHGRLAPAEKAAVMDAFTRNEVQLLVATTVIEV 630

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS  +  RL  ++ 
Sbjct: 631 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARARLQTMRE 690

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 691 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDQWLIE 734


>gi|309781309|ref|ZP_07676045.1| ATP-dependent DNA helicase RecG [Ralstonia sp. 5_7_47FAA]
 gi|308919722|gb|EFP65383.1| ATP-dependent DNA helicase RecG [Ralstonia sp. 5_7_47FAA]
          Length = 757

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 246/664 (37%), Positives = 369/664 (55%), Gaps = 40/664 (6%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ------HSSFQLQKRRPYKIL 93
           R +DL+ + P  + D      +  I+E      TG+ +Q       +    + RR   + 
Sbjct: 84  RDVDLVLHLPMRYEDET---TLLTIAEATARANTGWAAQVEGTVTRNEVAFRPRRQLVVH 140

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           + D +GE+ L F       +K +  EG ++ V G+++       MVHP  +   ++D   
Sbjct: 141 IADDSGELVLRFLNFYGSQVKQMA-EGVRLRVRGEVRGGFFGAEMVHP-TVRAVAEDEPL 198

Query: 154 P-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP----SIAEAFNI 208
           P  +  VY    G++    +K I+ AL+R P LPE +   L+     P    + A+A  +
Sbjct: 199 PDRLTPVYPSTAGVAQAYLRKAILNALARTP-LPETLPNSLITGPLAPLKLMTPADAVRL 257

Query: 209 IHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPI----NVEG 259
           +H P    D     E T PA  R+ +DELL+ Q++L   R Q  + +   PI      +G
Sbjct: 258 LHQPTPDVDEHSLVERTHPAWLRIKFDELLSQQLSL--KRAQAARRMRNAPILRDSGKDG 315

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            +A + +  +PF  T +Q     +I  D++    M R+LQGDVGSGKT++A +A   A++
Sbjct: 316 LLA-RFMNALPFKLTGAQARVWDEIRADLAHPYPMQRLLQGDVGSGKTVIAALAACQAID 374

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           AG QA +MAP  +LA+QHY  +  + +   + +  + G++ +  + +A  R+A G A ++
Sbjct: 375 AGWQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAARVAAGTAQLV 434

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----------APHVLLMTAT 429
           IGTHAL QD++ + +L L +VDEQHRFGV QRL L  KA+           PH L+M+AT
Sbjct: 435 IGTHALIQDAVTFARLGLAVVDEQHRFGVAQRLALRGKASNGDAPAANAQVPHQLMMSAT 494

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL +T   D+D+S I E P GR PI T ++   R DEVIER+     EG++ YW+C
Sbjct: 495 PIPRTLAMTYYADLDVSAIDELPPGRTPIVTRLVNDARRDEVIERIYAAAREGRQVYWVC 554

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P IEE +    ++ VE F +L +      + ++HGR+   +K +VM +F  G   +L+AT
Sbjct: 555 PLIEESEALQLQTAVETFETLSQSLQGLKVGLVHGRLPSAEKAAVMSAFAGGDLHVLVAT 614

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS  +  RL
Sbjct: 615 TVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCVLLYQAPLSPTAKQRL 674

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
             ++ T DGF IA  DL+ R  GE LG +QSG      A       L+E A+  A  +L 
Sbjct: 675 QTMRETTDGFEIARRDLEIRGPGEFLGARQSGEAMLRFADLNHDAWLVEFAQGAADAMLA 734

Query: 669 QDPD 672
           + P+
Sbjct: 735 RFPE 738


>gi|261378249|ref|ZP_05982822.1| ATP-dependent DNA helicase RecG [Neisseria cinerea ATCC 14685]
 gi|269145330|gb|EEZ71748.1| ATP-dependent DNA helicase RecG [Neisseria cinerea ATCC 14685]
          Length = 680

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 231/600 (38%), Positives = 344/600 (57%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK   +   M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQMAVGKRIRAVGEIKHGFHGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP      S  +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAESSGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDMLPDALLDRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +      S    PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q +   +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LGGDGTLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G QA +MAP  ILA+QH+   K++ +   + V  ++G+  +  + +A  ++A G
Sbjct: 303 LTAIESGAQAAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLAEG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D +++  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 TVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEV
Sbjct: 483 SETLQLQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A  E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPMLIEQNPEI 662


>gi|187930023|ref|YP_001900510.1| ATP-dependent DNA helicase RecG [Ralstonia pickettii 12J]
 gi|187726913|gb|ACD28078.1| ATP-dependent DNA helicase RecG [Ralstonia pickettii 12J]
          Length = 715

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 246/664 (37%), Positives = 369/664 (55%), Gaps = 40/664 (6%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ------HSSFQLQKRRPYKIL 93
           R +DL+ + P  + D      +  I+E      TG+ +Q       +    + RR   + 
Sbjct: 42  RDVDLVLHLPMRYEDET---TLLTIAEATARANTGWAAQVEGTVTRNEVAFRPRRQLVVH 98

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           + D +GE+ L F       +K +  EG ++ V G+++       MVHP  +   + D   
Sbjct: 99  IADDSGELVLRFLNFYGSQVKQMA-EGVRLRVRGEVRGGFFGAEMVHP-TVRAVADDEPL 156

Query: 154 P-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP----SIAEAFNI 208
           P  +  VY    G++    +K I+ AL+R P LPE +   L+     P    + A+A  +
Sbjct: 157 PDRLTPVYPSTAGVAQAYLRKAILNALTRTP-LPETLPNSLVTGPLAPLKLMTPADAVRL 215

Query: 209 IHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPI----NVEG 259
           +H P    D     E T PA  R+ +DELL+ Q++L   R Q  + +   PI      +G
Sbjct: 216 LHQPMPDVDEHSLVERTHPAWLRIKFDELLSQQLSL--KRAQAARRMRNAPILRDSGKDG 273

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            +A + +  +PF  T +Q    ++I  D++    M R+LQGDVGSGKT++A +A   A++
Sbjct: 274 LLA-RFMDALPFKLTGAQARVWEEIRADLAHPYPMQRLLQGDVGSGKTVIAALAACQAID 332

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           AG QA +MAP  +LA+QHY  +  + +   + +  + G++ +  + +A  R+A G A ++
Sbjct: 333 AGWQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAARVAAGTAQLV 392

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----------APHVLLMTAT 429
           IGTHAL QD++ + +L L +VDEQHRFGV QRL L  KA+           PH L+M+AT
Sbjct: 393 IGTHALIQDAVTFARLGLAVVDEQHRFGVAQRLALRGKASNGDGPAANVQVPHQLMMSAT 452

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL +T   D+D+S I E P GR PI T ++   R DEVIER+     EG++ YW+C
Sbjct: 453 PIPRTLAMTYYADLDVSAIDELPPGRTPIVTRLVNDARRDEVIERIYAAAREGRQVYWVC 512

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P IEE +    ++ VE F +L +      + ++HGR+   +K +VM +F  G   +L+AT
Sbjct: 513 PLIEESEALQLQTAVETFETLSQSLQGLKVGLVHGRLPSAEKAAVMSAFAGGDLHVLVAT 572

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS  +  RL
Sbjct: 573 TVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCVLLYQAPLSPTAKQRL 632

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
             ++ T DGF IA  DL+ R  GE LG +QSG      A       L+E A+  A  +L 
Sbjct: 633 QTMRETTDGFEIARRDLEIRGPGEFLGARQSGEAMLRFADLNQDAWLVEFAQGTADEMLA 692

Query: 669 QDPD 672
           + P+
Sbjct: 693 RFPE 696


>gi|217076377|ref|YP_002334093.1| ATP-dependent DNA helicase RecG [Thermosipho africanus TCF52B]
 gi|217036230|gb|ACJ74752.1| ATP-dependent DNA helicase RecG [Thermosipho africanus TCF52B]
          Length = 769

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 250/684 (36%), Positives = 389/684 (56%), Gaps = 40/684 (5%)

Query: 2   RPSFLNPLFAPLSTFRGVG-KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           + S L PL  P+   +G+G K+   FL   +N  N  +     LL + P  + DR     
Sbjct: 87  KSSDLKPLDTPIKYVKGIGPKRAQKFLK--LNVNNVEQ-----LLNFFPRDYEDRRRIIP 139

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I  + E+  V  TG ++     +         +L+DG  +I L +F +        F EG
Sbjct: 140 IPLLREDDKVVTTGKLTGVEKVKKGNLTIVSAVLSDGMYQILLKWFNQD-------FMEG 192

Query: 121 -------RKITVTGKIKKLKNRIIMVHPHYI--FHNSQDVNFPLIEAVYSLPTGLSVDLF 171
                  +K+ V G +KK     + +H   I  F+ ++   FP    +Y L  GL+ +  
Sbjct: 193 ILKGLLRKKLYVFGTVKKGFYGSLEIHNPEIELFNENKREIFP----IYPLTEGLNQNTV 248

Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
           ++II E +  +    E +  DL+ K+    + +A+  +H PR   +F   + AR RLAY+
Sbjct: 249 RRIISENIYNIYNFKEHLPDDLISKRDLLDVYQAYTGMHFPRS--NFHKKA-ARYRLAYE 305

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           E+L  Q+A LL +K+ +K  GI     GK + +++ ++ F  T +Q+ A ++I  D+   
Sbjct: 306 EILYLQVAFLLSKKENEKIGGISKKFNGKYSTELINSLSFELTNAQKKAYEEIKNDLKSD 365

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R+LQGDVGSGKT+V+ +AM    EAG Q+ +M P  ILA Q+++ I  +     I 
Sbjct: 366 KPMNRLLQGDVGSGKTIVSELAMLDNYEAGFQSAVMVPTSILAIQNFKKIYDHFSRFGIK 425

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V ++ G    + + +  +R+  G   +++GTHAL Q+ + +  L LV++DEQHRFGV+QR
Sbjct: 426 VALLIGATSNSEKERIKQRLKDGDIDVVVGTHALIQEDVHFKNLGLVVIDEQHRFGVEQR 485

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            +L  K      L+MTATPIPRTL L+  GD+D+S I E P GRKPIKT ++  ++I+EV
Sbjct: 486 KELISKGKLVDTLVMTATPIPRTLSLSLYGDLDVSIIDEMPKGRKPIKTFVVHQSKIEEV 545

Query: 472 IERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMS 526
               K V+SE   G +AY + P I+E ++   +S    +  L + +   I   +IHG+MS
Sbjct: 546 ---YKFVISEVENGGQAYIVYPLIDESEKLAVKSATSMYEVLTKEYFPDIPVGLIHGKMS 602

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           D +K+ +M  F +G  K+L++T+VIEVGIDV  A++I+IENAE FGLAQLHQLRGRVGRG
Sbjct: 603 DSEKDDIMYKFASGEIKILVSTSVIEVGIDVPQATVIVIENAERFGLAQLHQLRGRVGRG 662

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            + S C L     +S+ ++ RL+   +T DGF I+E DLK R  GE LG++Q G+P+F +
Sbjct: 663 NKQSYCYLTVG-NVSREAFERLNFFASTNDGFKISEFDLKLRGPGEFLGVRQHGLPEFKV 721

Query: 647 AQPELHDSLLEIARKDAKHILTQD 670
           A       ++ +AR+DAK+I+  +
Sbjct: 722 ADIINDIDIIMVAREDAKYIIENE 745


>gi|51892522|ref|YP_075213.1| ATP-dependent DNA helicase RecG [Symbiobacterium thermophilum IAM
           14863]
 gi|51856211|dbj|BAD40369.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 709

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 240/703 (34%), Positives = 394/703 (56%), Gaps = 23/703 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           F +PL  P+   +G+G   +  L+K    G A      DL+   P ++ D      I++ 
Sbjct: 17  FGDPLSMPVQYLKGIGPARARDLAK---QGIAT---VRDLIERVPRAYRDYSQIKPIAQA 70

Query: 65  SEERIVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
              +  ++ G +      +++      +++++DG+G    ++F +  +  +  F  G K+
Sbjct: 71  QNGQPESLMGTVVMVDDRRVRGNLHLTRVIISDGSGTAAGVWFNQPWQAKR--FPVGMKV 128

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVEAL 179
              G +++   +I + +P +   + +  + PL    I  VY L  GL+    ++ +  AL
Sbjct: 129 LFAGTVERRGAQIQITNPEWEIIDEESSSDPLHAGRIVPVYPLTGGLNPRDVRRAVYLAL 188

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
            +   ++P+ I   + +++     AEA+  IH P      E    AR  LA++EL   Q+
Sbjct: 189 QTAADLMPDTIPGPVRERQGLMPAAEAWRAIHFPDSGGQRER---ARATLAFEELFVLQV 245

Query: 239 ALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            L L+R+Q   ++ GI    +G++ +++   +PF  T +QE  I+ +  DM     M R+
Sbjct: 246 GLALVRRQTVVEQAGIAHGPDGEVTRRLRAGLPFRLTAAQERVIRQVAADMESSRPMNRL 305

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA+ A+A AV++G Q  +MAP  ILA+QHY  +++      + V +++G
Sbjct: 306 VQGDVGSGKTMVAVFALAKAVDSGHQGALMAPTEILAEQHYLNLRRIFAPLGVEVVLVSG 365

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++ +  R   L  +  G AHI +GTHAL +D + +  L LVI DEQHRFGV+QR +L QK
Sbjct: 366 SLTKKERDANLGLLQMGAAHIAVGTHALIEDRVAFKDLSLVITDEQHRFGVRQRARLQQK 425

Query: 418 A-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL- 475
               P  L+MTATPIPRTL LT  GD+D+S I E P GR+P+ T   P +   +V + L 
Sbjct: 426 GEVMPDTLVMTATPIPRTLALTLYGDLDVSVIDELPPGRRPVGTYWRPESARRQVYDHLM 485

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           +  +  G++ Y +CP IEE  +   ++  E +  L   +    + ++HGR+   +KE+VM
Sbjct: 486 RTEVPAGRQGYVVCPLIEESDKLQAQAATEWYERLKAQYPDVRLGLLHGRLRPAEKEAVM 545

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           ++F+ G  ++L+ TTVIEVG+DV +A+++IIE A+ FGLAQLHQLRGRVGRG   S C+L
Sbjct: 546 EAFRAGEIQVLVTTTVIEVGVDVPNATMMIIEGADRFGLAQLHQLRGRVGRGSHQSYCVL 605

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +  P  +  +  RL +++   DGF +AE+DL+ R  GE  G +Q GMP   +A P    +
Sbjct: 606 IADPK-TAEARERLMIMQKYSDGFALAEKDLELRGPGEFFGTRQHGMPDLKVANPIADLA 664

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
           +LE AR +A  ++ +DP L     Q++R  +   +  E F FI
Sbjct: 665 ILERARAEAMRLVEEDPHLRLPEHQALRQAVK-ERLGEQFGFI 706


>gi|241664128|ref|YP_002982488.1| ATP-dependent DNA helicase RecG [Ralstonia pickettii 12D]
 gi|240866155|gb|ACS63816.1| ATP-dependent DNA helicase RecG [Ralstonia pickettii 12D]
          Length = 715

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 246/664 (37%), Positives = 369/664 (55%), Gaps = 40/664 (6%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ------HSSFQLQKRRPYKIL 93
           R +DL+ + P  + D      +  I+E      TG+ +Q       +    + RR   + 
Sbjct: 42  RDVDLVLHLPMRYEDET---TLLTIAEATARANTGWAAQVEGTVTRNEVAFRPRRQLVVH 98

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           + D +GE+ L F       +K +  EG ++ V G+++       MVHP  +   ++D   
Sbjct: 99  IADDSGELVLRFLNFYGSQVKQMA-EGVRLRVRGEVRGGFFGAEMVHP-TVRAVAEDEPL 156

Query: 154 P-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP----SIAEAFNI 208
           P  +  VY    G++    +K I+ AL+R P LPE +   L+     P    + A+A  +
Sbjct: 157 PDRLTPVYPSTAGVAQAYLRKAILNALARTP-LPETLPNSLITGPLAPLKLMTPADAVRL 215

Query: 209 IHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPI----NVEG 259
           +H P    D     E T PA  R+ +DELL+ Q++L   R Q  + +   PI      +G
Sbjct: 216 LHQPSPDVDEHSLVERTHPAWLRIKFDELLSQQLSL--KRAQAARRMRNAPILRDSGKDG 273

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            +A + +  +PF  T +Q     +I  D++    M R+LQGDVGSGKT++A +A   A++
Sbjct: 274 LLA-RFMNALPFKLTGAQARVWDEIRADLAHPYPMQRLLQGDVGSGKTVIAALAACQAID 332

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           AG QA +MAP  +LA+QHY  +  + +   + +  + G++ +  + +A  R+A G A ++
Sbjct: 333 AGWQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAARVAAGTAQLV 392

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----------APHVLLMTAT 429
           IGTHAL QD++ + +L L +VDEQHRFGV QRL L  KA+           PH L+M+AT
Sbjct: 393 IGTHALIQDAVTFARLGLAVVDEQHRFGVAQRLALRGKASNGDAPAANAQVPHQLMMSAT 452

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL +T   D+D+S I E P GR PI T ++   R DEVIER+     EG++ YW+C
Sbjct: 453 PIPRTLAMTYYADLDVSAIDELPPGRTPIVTRLVNDARRDEVIERIYAAAREGRQVYWVC 512

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P IEE +    ++ VE F +L +      + ++HGR+   +K +VM +F  G   +L+AT
Sbjct: 513 PLIEESEALQLQTAVETFETLSQSLLGLKVGLVHGRLPSAEKAAVMSAFAGGGLHVLVAT 572

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS  +  RL
Sbjct: 573 TVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCVLLYQAPLSPTAKQRL 632

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
             ++ T DGF IA  DL+ R  GE LG +QSG      A       L+E A+  A  +L 
Sbjct: 633 QTMRETTDGFEIARRDLEIRGPGEFLGARQSGEAMLRFADLNHDAWLVEFAQGAADAMLA 692

Query: 669 QDPD 672
           + P+
Sbjct: 693 RFPE 696


>gi|218961965|ref|YP_001741740.1| ATP-dependent DNA helicase RecG [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730622|emb|CAO81534.1| ATP-dependent DNA helicase RecG [Candidatus Cloacamonas
           acidaminovorans]
          Length = 699

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 240/676 (35%), Positives = 380/676 (56%), Gaps = 36/676 (5%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +GVG+  +  LSK+           +DL+ + P  +I R     + ++    ++  T  
Sbjct: 17  LKGVGEHRAQLLSKL------GIKTILDLMEHFPKVYISRKLSVTLGDLKPGDMLAFTAV 70

Query: 76  ISQHSSFQLQK-RRPYKILLNDG-TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
           IS     Q  K R    I ++DG  G I   F Y    + + +F  GR + + G I +  
Sbjct: 71  ISWVDVHQTAKGRNILSIGVSDGKVGIICSWFTY--PPVYEKMFLPGRLVWLNGTITEFN 128

Query: 134 NRIIMVHPHY-IFHNSQDVNFPL-----IEAVYSLPTGLSVDLFKKIIVEALSRLP-VLP 186
            ++ MVHP + +  + +D          +  VY L  G++  L +++I  A +     + 
Sbjct: 129 GQLEMVHPEFELIDDWEDTKEDFWKNREVLPVYPLTEGINQKLMRRLIYNAFALYAGFIE 188

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + ++++ K  F     A   +H  +   + E     R R AY++    Q+ L    K 
Sbjct: 189 EKLPENIIAKHHFLERKTALQKMHFGQNPAEIE---KVRRRFAYEDFFYTQL-LWARHKT 244

Query: 247 F--KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           F   K  GI    + ++   + + +PF+ TK+Q+  + +I  DM  + +M R+LQGDVGS
Sbjct: 245 FHTTKTKGIKFINKKQLTTGVYKKLPFTLTKAQKKVLWEIFADMCSEKQMSRLLQGDVGS 304

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+V L AM  AVE G Q+ +MAP  ILA+QHYE I    +  ++ V ++ G + +   
Sbjct: 305 GKTVVTLFAMLLAVENGYQSALMAPTEILAEQHYETITNLLKGFEVQVCLLKGGVYKG-- 362

Query: 365 RKALER-IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++A+++ IA G A I+IGTHAL Q  I + +L    VDEQHRFGV+QR KL   A  P +
Sbjct: 363 KEAIKKAIAEGSAQIVIGTHALLQKDINFKRLGFACVDEQHRFGVEQRAKLANLAEHPDL 422

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L ++ATPIPR+L +T  GD+++S + E P  RKP++T+I P ++ID V   ++  L+ G+
Sbjct: 423 LYLSATPIPRSLAMTVYGDLEVSILDELPPTRKPVRTIIRPSSKIDTVYSEVRQELALGR 482

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------AIIHGRMSDIDKESVMDSF 537
           + Y +CP +EE ++       +    L+E+ +  +      +++HGRM   +K+ +M  F
Sbjct: 483 QVYIVCPLVEESEKIALLDATK----LYEYISQKVFPEYPASLLHGRMPVKEKDMIMQKF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  K+L++TTVIEVG+DV +AS++I+E+AE FGLAQLHQLRGRVGRG   + C L+ H
Sbjct: 539 KAGEIKILVSTTVIEVGVDVPNASVMIVEHAERFGLAQLHQLRGRVGRGSAQAYCYLIEH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            P+S+ ++ RL+ +  T DGF+IAE+DL+ R  GEI G +QSG+P F  A       +L 
Sbjct: 599 SPVSEVAWQRLTTMTKTTDGFIIAEKDLELRGPGEIFGYEQSGLPVFRFANLVRDQEILR 658

Query: 658 IARKDAKHILTQDPDL 673
           +AR+DA  I+  DPD 
Sbjct: 659 LARQDAFEIVHADPDF 674


>gi|239616417|ref|YP_002939739.1| ATP-dependent DNA helicase RecG [Kosmotoga olearia TBF 19.5.1]
 gi|239505248|gb|ACR78735.1| ATP-dependent DNA helicase RecG [Kosmotoga olearia TBF 19.5.1]
          Length = 787

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 241/674 (35%), Positives = 393/674 (58%), Gaps = 43/674 (6%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           +GVG++ +  L K+       ET   DLL++ P  + DR     +S I  +R VTI   +
Sbjct: 116 KGVGERRAKILKKL-----GIET-VKDLLWWLPRDYEDRRRIVPLSSIVADRKVTIRAKL 169

Query: 77  SQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
               +F ++K + Y I+   ++DG G+I L +F    E + +   + R+  +TG  KK  
Sbjct: 170 Q---NFSVKKVKEYVIISAVVSDGFGQIILKWF--NQEYITDRLIKEREYLITGIPKKTP 224

Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAV-----------YSLPTGLSVDLFKKIIVEALSRL 182
                  P+       ++N P IE +           YSL  G+S  + +KI+ + ++ +
Sbjct: 225 -----FGPY-------EMNSPEIEEITGRVPREILPLYSLSAGISQKVMRKIVRKNITNV 272

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            +L E+I  +++++++      A   +H P+   + +    +R RLAY+EL   ++A+L 
Sbjct: 273 RLLKEFIPAEVIKERNLLPRHHAMYTVHFPKSLYELK---ESRRRLAYEELFLFEVAVLY 329

Query: 243 MRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            R++ K  + GI  ++ GK+A++ + ++ F  T  Q  A ++I +DM     M R+LQGD
Sbjct: 330 NREKLKTTKGGISKSISGKLAERFIDSLNFVLTGDQMRAFEEIREDMKAPTPMNRLLQGD 389

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA +A+    EAG Q+ +M P  +LA Q ++ + K  +   I VE++ G+  +
Sbjct: 390 VGSGKTVVAELAIIDNFEAGYQSAMMVPTTVLATQQHQKLVKDLEPLGIKVELLVGSQKK 449

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           + + +  +RIA G+  +++GTHAL Q+++++  L LVI+DEQHRFGV+QR  L  K    
Sbjct: 450 SQQEEIKKRIAIGEVDVVVGTHALIQENVKFKDLGLVIIDEQHRFGVKQREALMNKGALV 509

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             L+MTATPIPRTL LT+ GD+DIS ITE P GR PI+T++I   R+ E+   ++  ++ 
Sbjct: 510 DTLVMTATPIPRTLALTAYGDLDISTITEMPPGRAPIRTMLISEKRLPELYAFIRDEVNH 569

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKN 539
           G +A++I P IEE ++ + ++  +    L +     I +  +HGRMSD +K  +M  FKN
Sbjct: 570 GHQAFFIYPLIEESEQMDLKAATDEAERLQKEVFPDIGVELLHGRMSDEEKNRIMHRFKN 629

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L++T+V+EVGID+  A++++IE+ E FGLAQLHQLRGRVGR    S C+L+ +  
Sbjct: 630 KEAMILVSTSVVEVGIDIPTATVMVIEHPERFGLAQLHQLRGRVGRSSLKSYCMLVLNSN 689

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           +S  +  RL     T++GF +AE DL  R  GE +G +Q G+P FL+A       LL +A
Sbjct: 690 ISGEALDRLRKFAGTQNGFKLAEIDLSLRGPGEFMGTRQHGLPDFLVADIVKDSELLIMA 749

Query: 660 RKDAKHILTQDPDL 673
           R DA  +L +DP+L
Sbjct: 750 RNDAMELLKRDPNL 763


>gi|83815366|ref|YP_444415.1| ATP-dependent DNA helicase RecG [Salinibacter ruber DSM 13855]
 gi|83756760|gb|ABC44873.1| ATP-dependent DNA helicase RecG [Salinibacter ruber DSM 13855]
          Length = 700

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 234/679 (34%), Positives = 376/679 (55%), Gaps = 34/679 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISE-ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           DLL ++P  ++DR     + ++ E    VT+ G +   +      ++  +I+L    G  
Sbjct: 35  DLLRFYPRRYLDRTTVTPVRQLQEGPDSVTVVGTVRSVNVVPGNNQKRLEIILEGEQGGR 94

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
               +++    ++  F EG ++   G ++K      M HP +   N +    PL++    
Sbjct: 95  MKGTWFQGVWWVRKAFDEGDRVAFHGTVEKYGRWHSMTHPDFDRLNDEG---PLLDTGRI 151

Query: 162 LP----------TGLSVDLFKKIIVE-----ALSRLPVLPEWIEK--DLLQKKSFPSIAE 204
           +P           GL+    ++++ +      L     +P+WI    DL++ +       
Sbjct: 152 VPLYPGGEAMSNVGLTSRTVRRVLYDLFKEHGLKLTETMPDWIMDGYDLMEGRV------ 205

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
           A   IH P+  ++    S AR RL ++EL   Q+ L  M +Q ++  G   +  G   ++
Sbjct: 206 ALRAIHFPKTQQEL---SRARRRLKFEELFFIQLLLAQMHEQQEEVAGPAFDDPGAYTRE 262

Query: 265 ILRNI-PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            +R + PF  T +Q  A+++I+ D+    +M R+LQGDVGSGKT+VA+ AM  A ++G Q
Sbjct: 263 FVREVLPFELTGAQTRALREIIGDVQTGTQMNRLLQGDVGSGKTVVAVAAMMHAYDSGYQ 322

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +  MAP  ILA+QH+  ++ Y Q   +   ++ G+  +A R  AL+ +  G + + +GTH
Sbjct: 323 SAFMAPTEILAEQHHANLQDYLQPLGLEPRLLIGSQTKAEREAALQAVRSGASPVAVGTH 382

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
           AL QD + + +L L +VDEQHRFGV QR ++ +K   PH+LLMTATPIPR+L LT  GD+
Sbjct: 383 ALIQDEVAFDRLGLAVVDEQHRFGVAQRAEMFEKGERPHMLLMTATPIPRSLALTLYGDL 442

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           D+SKI E P GRKP++T +    R  EV   L   L +G++A+ + P +EE ++ + +  
Sbjct: 443 DVSKIDEMPPGRKPVETRLRAEKRRGEVYAFLNDRLEQGEQAFVVYPLVEESEKMDLKDA 502

Query: 504 VERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
                 L E F   ++ ++HG++S  DK++ M  FK G   LL+ATTVIEVG+DV +A++
Sbjct: 503 ESGAQELQEKFPDYTVGLVHGQLSADDKDATMRRFKEGDIDLLVATTVIEVGVDVPNATV 562

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           +++E+AE FGL+QLHQLRGRVGR ++ S C+L+     S+ +  RL  +  T DGF I+E
Sbjct: 563 MLVEHAERFGLSQLHQLRGRVGRSDQQSYCVLMASYKRSQEAKQRLEAMARTNDGFEISE 622

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
            DL+ R  G+  G +QSGMP   IA     D +LE+AR+ A  ++ +DP L +   + +R
Sbjct: 623 TDLQIRGAGDFFGTRQSGMPDLKIADLTEDDEILEVAREAAFALIEKDPHLRADEHERLR 682

Query: 683 ILLYLYQYNE-AFQFIRAG 700
              Y   Y E    F R G
Sbjct: 683 -RRYQEDYAEHGLGFARVG 700


>gi|89895420|ref|YP_518907.1| hypothetical protein DSY2674 [Desulfitobacterium hafniense Y51]
 gi|89334868|dbj|BAE84463.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 693

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 252/674 (37%), Positives = 390/674 (57%), Gaps = 27/674 (4%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP+  +P  + L   +GVG + +  L++I            DL FY P  + DR  +  I
Sbjct: 23  RPAKPSPPRS-LQFLKGVGPERAKLLAQI------GLHTVKDLFFYFPRRYEDRSLQ-SI 74

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLN-DGTGEITLLFFYRKTEMLKNVFFEG 120
            E+ +  + ++ G +    + Q+ + +   + L+ +  G +    ++ +T +LK  +  G
Sbjct: 75  GELKDGELASVAGKVV---AGQIARGKLKVVKLSIEQDGRLVYAVWFNQTYILKQ-YPVG 130

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
             + VTGK++  + R+  +    I   +       I  VYS    LS  + + I+   L 
Sbjct: 131 TSVIVTGKVR-WQQRVPEIQATDI-QKAGAAQPAAILPVYSETARLSSKVIRTIVQGVLD 188

Query: 181 RLPVL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           + P L PE++  +  + K +   A+A+  IH PR    F     ARERL ++E+L  Q++
Sbjct: 189 QAPELFPEFLPPE--EGKGWVPRAQAYQEIHFPRT---FHSLGQARERLVFEEVLFLQLS 243

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +  +R   ++E    +     + Q+ L N+PF  T++Q+  I++I +DM+    M R++Q
Sbjct: 244 VARLRSGVQRENSPQLKSGESLVQRFLANLPFELTQAQKRVIQEIFRDMANTQGMARLVQ 303

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT VA+ A+  AV +G Q  +MAP  ILA QHY+ +        + V  + G+ 
Sbjct: 304 GDVGSGKTAVAMAALLMAVGSGYQGAMMAPTEILALQHYQSLAAAFTPLGLHVVCLLGSQ 363

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            ++ R K L  IA+G+AH+I+GTHAL Q+S+Q++ L L I DEQHRFGV+QR  L  K  
Sbjct: 364 TKSERDKILTEIAYGKAHVIVGTHALIQESVQFHSLGLAITDEQHRFGVKQRTSLQTKGE 423

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PHVL++TATPIPRTL LT  GD+ +S + E P GRKPI T  +       + + ++  +
Sbjct: 424 NPHVLVLTATPIPRTLALTLYGDLQLSALDEMPQGRKPIMTRKLTERGRPSLEKFMEEQM 483

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            +G++ Y +CP +EE +  +  S  ERF SL E F +  ++++HGRM  + KE +MD+F+
Sbjct: 484 EKGRQIYVVCPLVEESENVDLISATERFQSLQERFPNRRVSLLHGRMKGVQKEEIMDAFQ 543

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L++TTV+EVG++V +A++++IE AE FGLAQLHQLRGRVGRG E S C LL   
Sbjct: 544 KGEVDILVSTTVVEVGVNVPNATVMVIEGAERFGLAQLHQLRGRVGRGSEQSYCFLLSD- 602

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             +KNS  RL VL  T+DGF IAEEDLK R  GE+LG +Q G+ +  +A       L+E 
Sbjct: 603 --AKNS-RRLEVLCETQDGFKIAEEDLKIRGAGELLGTRQHGVMELRLADLSRDGRLVEQ 659

Query: 659 ARKDAKHILTQDPD 672
           A + A+ +LT  PD
Sbjct: 660 AYQLAQKVLTH-PD 672


>gi|282898424|ref|ZP_06306414.1| hypothetical protein CRD_02961 [Raphidiopsis brookii D9]
 gi|281196590|gb|EFA71496.1| hypothetical protein CRD_02961 [Raphidiopsis brookii D9]
          Length = 829

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 231/650 (35%), Positives = 386/650 (59%), Gaps = 23/650 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99
           DLLFY+P  +ID   +  I E+     VTI G + + + F   K +   IL   L D TG
Sbjct: 160 DLLFYYPRDYIDYARQVNIRELKGGETVTIIGEVRRCNCFTSPKNQKLSILELMLKDQTG 219

Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD 150
           ++ +  FY  +        E LK  +  G  +   G +K  K  + + +P   +  NS D
Sbjct: 220 QVKVSRFYAGSRFSSKGWQEGLKRRYTPGTLVAACGLVKPSKYGLTLDNPEIEVLANSGD 279

Query: 151 V--NFPL--IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
              +F +  +  +Y L  G+  +  ++ ++  L  +  L + +   L +K +   + +A 
Sbjct: 280 AIDSFTIGRVVPIYGLTEGVVANAVRQAVMAVLPSVKSLQDPLPPGLRKKYNLIELKQAI 339

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKI 265
             IH P   +D +    A+ RL +DE    Q+ LL  +KQ K     PI    GK+  + 
Sbjct: 340 PNIHFP---QDSDTLKMAKRRLVFDEFFYLQVGLLQRQKQAKANQTGPILAPSGKLLDQF 396

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF  TK+QE  I DIL D+ +   M R++QGDVGSGKT+VA++A+ AA+++G QA 
Sbjct: 397 HEILPFKFTKAQERVINDILNDLQKSTAMNRLVQGDVGSGKTVVAVVAILAAIQSGYQAA 456

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  +LA+QHY  +  +     + VE++TG+   + RR+   ++  G+  +++GTHAL
Sbjct: 457 LMAPTEVLAEQHYRKLVTWFNLLHLPVELLTGSTKTSKRREIHSQLETGELPLLVGTHAL 516

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            QD +++++L LV++DEQHRFGV+QR KL QK   PHVL MTATPIPRTL LT  GD+D+
Sbjct: 517 IQDKVKFHRLGLVVIDEQHRFGVEQRAKLQQKGEQPHVLTMTATPIPRTLALTVHGDLDV 576

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S+I E P GR+ IKT ++  ++  +  + ++  +++G++ Y + P +EE ++ + RS ++
Sbjct: 577 SQIDELPPGRQQIKTSLLTGHQRPQAYDLIRREIAQGRQVYVVLPLVEESEKLDLRSAID 636

Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +  L E    +  + ++HG+M+  +KE  ++ F++   ++L++TTV+EVG+DV +A+++
Sbjct: 637 EYQKLQETVFPNFQVGLLHGKMTSTEKEEAINKFRDNQTQILVSTTVVEVGVDVPNATVM 696

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +IE+AE FGL+QLHQLRGRVGRG + S C+L+     + ++  RL VL+ ++DGF I+E 
Sbjct: 697 LIEHAERFGLSQLHQLRGRVGRGMDQSYCLLM-SSSRNPDAQQRLKVLEQSQDGFFISEM 755

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           D++ R  GE++G +QSG+    +A     + +L +AR+ A+ ++  D  L
Sbjct: 756 DMRFRGPGEVMGTRQSGVADLTLASLVEDEEVLLLARQAAEKVIDMDVSL 805


>gi|168188107|ref|ZP_02622742.1| ATP-dependent DNA helicase RecG [Clostridium botulinum C str.
           Eklund]
 gi|169294058|gb|EDS76191.1| ATP-dependent DNA helicase RecG [Clostridium botulinum C str.
           Eklund]
          Length = 673

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 245/665 (36%), Positives = 375/665 (56%), Gaps = 22/665 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           ++  + + +G+G K    L++       N    +DLL Y P  +   +Y   IS+I+ E 
Sbjct: 3   VYDDVVSLKGIGPKTKELLNQ------CNIYNILDLLLYFPRDYDKAYYCEDISKITNED 56

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            V I   +         +R      +      I     +   + +KN F   ++  + G+
Sbjct: 57  KVLIKAKVKNIKKDAYVRRNMIISTVEFIKNNIVFKGKWFNQKYIKNKFIVNKEYFIFGR 116

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++  KN I   +P  I  N +  +F  +   YSL   ++   F+  I   L  + +L E 
Sbjct: 117 VQLEKNNITFTNPT-IVDNPE--SFLNLIPKYSLKGSITNKFFQNTIKHILENIDIL-EN 172

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   +L K S  S+ EA   IHNP   K  E    A+ RL + EL    + LL++ KQ+K
Sbjct: 173 LPSTILNKYSLISLDEAIRNIHNPTGVKSLE---EAKNRLKFQELFTYSLKLLML-KQYK 228

Query: 249 KEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K  G+   +  ++  KIL++ IPF+ T SQ   I++IL D  +   M R++QGDVGSGKT
Sbjct: 229 KSKGVGFKISDEL--KILKDSIPFNLTNSQNKVIREILIDEKRDIPMNRLVQGDVGSGKT 286

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VALI++   V+ G Q  +MAP  ILA QHY    +  ++  I +E++TG     H+ + 
Sbjct: 287 IVALISIFNVVKNGYQGCLMAPTEILANQHYTQALELFKDFNIAIELLTG--STKHKDEV 344

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             R+  G   +IIGTHAL +D +++ KL +V+ DEQHRFGV+QR KL  K     VL+MT
Sbjct: 345 KNRLKSGSIDLIIGTHALLEDDVEFSKLGMVVTDEQHRFGVKQRSKLYNKNNNIDVLVMT 404

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL L+  GD+DIS I E P GRK + T  +     + +       +  G + Y 
Sbjct: 405 ATPIPRTLALSIYGDLDISSIDELPPGRKKVDTYSVNDRARNRIYNFALKEIYNGAQVYI 464

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP +EE ++ N +SV + +  L E +   I  AI+HG+MS  +K+ +M+ FKNG  K+L
Sbjct: 465 VCPLVEENEDLNIKSVEKLYIELKEKYFKDIEIAILHGKMSSKEKDDIMNKFKNGKTKVL 524

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           I+TTVIEVG++V +A+++IIENAE FG++QLHQLRGRVGRG++ S CIL+ +   S+ + 
Sbjct: 525 ISTTVIEVGVNVPNATLMIIENAERFGISQLHQLRGRVGRGDKKSYCILITNSS-SEITK 583

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R++V+  + DGF IAEEDLK R  GEI G  Q G   F+I+       +L+IA K+A++
Sbjct: 584 QRMNVITKSNDGFFIAEEDLKLRGSGEIFGFNQHGEDGFIISNIVDDYKILKIANKEARN 643

Query: 666 ILTQD 670
           ++  +
Sbjct: 644 LINSN 648


>gi|313887889|ref|ZP_07821568.1| ATP-dependent DNA helicase RecG [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846055|gb|EFR33437.1| ATP-dependent DNA helicase RecG [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 676

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 242/673 (35%), Positives = 386/673 (57%), Gaps = 27/673 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +G+G K +    K+            DLL ++P  + D     K++ +SE +
Sbjct: 3   LSDPIKNLKGIGPKRAELFHKL------GIYTIEDLLHFYPRRYEDS---SKVTRVSEAK 53

Query: 69  IVTITGYISQHSSFQLQKRRPYK------ILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           I     +  +  S +LQ RR  K       L  D +GE+ L FF      L N    GR 
Sbjct: 54  IGEKNTFRVRILS-KLQNRRIRKGLTLTSFLAEDESGEVELSFF--NAFYLHNKILPGRC 110

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             V GK    + R+ M  P  I           I  +Y+L  GL+  +F+K++ + +   
Sbjct: 111 YLVYGKADYFRGRVTMSSPE-IEEVDNLKKLGKISPIYNLTEGLNNFVFEKVVEQVIGE- 168

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            +  E + K++L+K SF    +A   IH P+  K++     ARERL Y+EL   ++++L 
Sbjct: 169 NLFRENLPKEILEKYSFLGKNDAIRAIHYPKSRKNY---IQARERLIYEELFLFELSILK 225

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            + Q ++   I   ++ ++    +  +PF  T+ Q++ IK+I  DM +   + R++QGDV
Sbjct: 226 NKVQNERRDAIKFEIKDQVFD-FINKLPFKLTEGQDTVIKEIFSDMKEGKAINRLIQGDV 284

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT++A+I M  A   G Q+ IMAP  ILA+QH+E   +  +   I V ++ G+  + 
Sbjct: 285 GSGKTIIAIIIMYLAYLNGYQSSIMAPTEILAKQHFESFVELLEPLGIKVGLLIGSTSKK 344

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R  L+ +  G   I+IGTHAL ++++ + KL + ++DEQHRFGV QR  L  K     
Sbjct: 345 AKRDILDNLEMGSIDILIGTHALIEENVVFKKLGVNVIDEQHRFGVVQRNMLQNKNKDAA 404

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+M+ATPIPR+L L    D+D+S I   P GRKPIKT+ I  N +++ +  +K  L+EG
Sbjct: 405 TLVMSATPIPRSLSLVLYADLDVSIIKSMPKGRKPIKTIAINENMLEKSLAFIKKELAEG 464

Query: 483 KKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           ++AY IC  IEE ++  N ++V + +  L ++F+  ++ ++HG+M   +K  VM+ F   
Sbjct: 465 RQAYVICSLIEENQDYENLQAVEKVYEELSQYFSDFNLGLLHGKMKAEEKNQVMNDFAEN 524

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              LL++TTV+EVG++V +AS+I+I NAE FGL+ LHQLRGRVGRG++ S CI LY+   
Sbjct: 525 KINLLVSTTVVEVGVNVPNASVIMIYNAERFGLSTLHQLRGRVGRGDQQSYCI-LYNLSK 583

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+ S+ R+ ++ ++ DGF IA +DL+ R  G+ILG +QSGMP   +A P   +++L+ A 
Sbjct: 584 SEISWERMKIMTDSNDGFYIANKDLELRGFGDILGTRQSGMPNLRLADPFRDETILKYAA 643

Query: 661 KDAKHILTQDPDL 673
           +D K IL +DP+L
Sbjct: 644 EDVKKILGEDPNL 656


>gi|28378326|ref|NP_785218.1| ATP-dependent DNA helicase RecG [Lactobacillus plantarum WCFS1]
 gi|254556534|ref|YP_003062951.1| ATP-dependent DNA helicase RecG [Lactobacillus plantarum JDM1]
 gi|28271161|emb|CAD64066.1| ATP-dependent DNA helicase RecG [Lactobacillus plantarum WCFS1]
 gi|254045461|gb|ACT62254.1| ATP-dependent DNA helicase RecG [Lactobacillus plantarum JDM1]
          Length = 679

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/671 (34%), Positives = 387/671 (57%), Gaps = 30/671 (4%)

Query: 13  LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           ++T  GVG      L+++ IN          DLL Y+P  + D   +  ++EI+++  VT
Sbjct: 9   VATLSGVGPARQKGLAELGINT-------IADLLTYYPFRYEDLQVK-DVNEIADQEKVT 60

Query: 72  ITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           + G ++     + F  +K R  +++L++    ++ ++ F+ +  ++K +   G+ + V G
Sbjct: 61  LKGTVASEPVLARFGRKKNRLNFRLLIDH---DVYMVTFFNQPYLMKQIE-TGQDLAVYG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLP 186
           K    ++ +  +    I  N+ D  F    ++Y     +     +K+I +A     PV+ 
Sbjct: 117 KWDATRSSLTGMK--IINPNNADSAFG---SIYPASKTVKQGTIQKMIKQAYELYAPVIT 171

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + +  +L  K       +  + +H P    D   ++ AR    Y+E L  Q+ + ++++ 
Sbjct: 172 DIVPANLRAKYRLLPRRQMIHDMHFPASQAD---STAARRSATYEEFLLFQMQMQVLKQT 228

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
                GI I  +    +  ++ +PF  T +Q+  + +I  D+     M R+LQGDVGSGK
Sbjct: 229 DATTNGIAIAYDNDRLKAFIKTLPFELTHAQKRVVNEICLDLKSPKHMNRLLQGDVGSGK 288

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA I M AA+ AG QA +MAP  ILA+QH   + +   +T + V ++TG    A R+ 
Sbjct: 289 TIVAAIVMYAAITAGYQAALMAPTEILAEQHANNLAQVFADTDVNVALLTGATKPAARKT 348

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            L  +A G+ +++IGTHAL QD + Y  L LVI DEQHRFGV QR    QK   P  L M
Sbjct: 349 LLAALAAGEINLLIGTHALIQDGVTYANLGLVITDEQHRFGVNQRAAFRQKGGQPDALAM 408

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL +T+ G++D+S+I E PAGR+PI+T  +  N+ +  +  +   +  G +AY
Sbjct: 409 TATPIPRTLAITAYGEMDVSEIDELPAGRQPIQTTWVRSNQANSALSFVHQQIDNGSQAY 468

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            + P IEE +  + ++      +L E+F +S  + ++HGRM   +K++VM +FK G  +L
Sbjct: 469 VVTPLIEESETLDVKNAEALSANLQEYFGASVKVGLLHGRMKPEEKDAVMAAFKAGDIQL 528

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG+DV +A+I++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++  
Sbjct: 529 LVSTTVIEVGVDVKNATIMMIYDADRFGLAQLHQLRGRVGRGTKASYCILVADPK-NQQG 587

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ ++  T +GF++A++DL+ R  G++LG+KQSGMP+F +  P    ++L++A++DA 
Sbjct: 588 IERMQIMTQTTNGFVLAQKDLELRGAGDVLGVKQSGMPEFKVGDPIADLTVLQVAQQDA- 646

Query: 665 HILTQDPDLTS 675
           H + Q PD  S
Sbjct: 647 HAIVQQPDWQS 657


>gi|285017596|ref|YP_003375307.1| ATP-dependent DNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283472814|emb|CBA15319.1| probable atp-dependent dna helicase protein [Xanthomonas
           albilineans]
          Length = 715

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 239/692 (34%), Positives = 379/692 (54%), Gaps = 38/692 (5%)

Query: 11  APLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
           APL+T  GVG K +  F ++ ++          DL  + P  + DR     ++ +     
Sbjct: 17  APLTTLPGVGPKLAEKFAARGLST-------LQDLWLHLPLRYEDRTRLTAVAALQPGVP 69

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFF-YRKTEMLKNVFFEGRKITVTG 127
             +  ++ Q      + R   ++ + D + G + L FF +R  +  +  F  G ++   G
Sbjct: 70  AQVDVWV-QAVDRGFRYRPMLRVAVADASHGTLVLRFFQFRAAQAAQ--FVVGARLRAFG 126

Query: 128 KIKKLKNRIIMVHPHYIF-HNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP-- 183
             K  ++ +  VHP Y F    ++V     ++ VY +  G+     +++I +AL RLP  
Sbjct: 127 TPKPGQHGLEFVHPSYQFLGEGEEVALGDRLDPVYPVVEGVGPATLRRLIGQALDRLPED 186

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIA 239
              E +   LL +   PS+  A  + H P      A       PA++RL  +ELLA  ++
Sbjct: 187 ASLELLPPVLLAELGLPSLRHALLVAHRPPPQADLAALAAGLHPAQQRLVLEELLAHHLS 246

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L   R   +++    ++  G++ +++ +++PF  T +Q      I  D+ +   MLR++Q
Sbjct: 247 LRRQRIALQRQPAPSLHSRGRLVKRLQQSLPFQLTGAQLRVFAQIRADLERPAPMLRLVQ 306

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA +A   AV+ G QA + AP  +LA+QH   ++ + +   + V  + G +
Sbjct: 307 GDVGSGKTVVAAMAAMLAVDKGKQAALAAPTELLAEQHLTNLRTWLEPLGVRVAWLAGKV 366

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-- 417
               R + L +IA G+A +++GTHAL Q ++ ++ L L IVDEQHRFGV QRL L  K  
Sbjct: 367 TGKARSRVLAQIASGEAQVVVGTHALMQAAVTFHDLALAIVDEQHRFGVHQRLALRDKGA 426

Query: 418 --ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
             A  PH L+MTATPIPRTL + +  D+D+S I E P GR P++T+++   R  E+++R+
Sbjct: 427 SGAGVPHQLVMTATPIPRTLAMAAYADLDVSAIDELPPGRTPVQTIVLNAERRPELVQRI 486

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-------------IAIIH 522
           +V  +EG++AYW+C  IE+ +++   +     N L      +             + + H
Sbjct: 487 RVACAEGRQAYWVCTLIEDAEDAETSAQAGAGNRLEASAAQATFETLSAQLPELRVGLAH 546

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GRM   +K++ M +FK G   LL+ATT+IEVG+DV +AS++IIENAE  GLAQLHQLRGR
Sbjct: 547 GRMKSAEKQAAMRAFKQGEIDLLVATTIIEVGVDVPNASLMIIENAERLGLAQLHQLRGR 606

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG  +SSC+L+Y  PLS  +  RL  ++ T DGF+IAE+DL+ R  GE+LG +Q+G+ 
Sbjct: 607 VGRGAAVSSCVLMYQAPLSAMARQRLETMRQTNDGFVIAEKDLELRGPGELLGTRQTGLA 666

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            F +A       LL      A  +L   P L 
Sbjct: 667 AFRVADLARDAGLLPRVHALADRLLDASPALA 698


>gi|260177190|gb|ACX33914.1| putative ATP-dependent DNA helicase RecG [uncultured prokaryote
           AT3]
          Length = 695

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/605 (38%), Positives = 342/605 (56%), Gaps = 24/605 (3%)

Query: 83  QLQKRRPYKILLNDGTGEITLLF--FY-RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           Q + RR   +  +D +G + L F  FY  +T+  +      R++ + G+++       MV
Sbjct: 79  QFRPRRQLVVRCHDDSGPLVLRFINFYGSQTKQFEGARDLNRRLRLFGEVRAGFFGDEMV 138

Query: 140 HPHYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRL---PVLPEWIEKDLLQ 195
           HP            P  +  VY    GLS    +KII ++L+++   P LP     +L  
Sbjct: 139 HPRVRLVAENHAELPDRLTPVYPTTAGLSQAALRKIIGKSLAQVDLSPTLPADSAPEL-- 196

Query: 196 KKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
               P++ +A   +H P    D     E T P   RL ++EL+A Q++L       ++  
Sbjct: 197 ----PAVDQAVRYLHAPPPDADVTTLQEHTHPCWRRLKFEELVAQQLSLKRAYLARRERG 252

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
             P+   G+I   +L ++PF  T +Q+   +++  D+   + M R+LQGDVGSGKT+VA 
Sbjct: 253 APPLLPTGEITNALLASLPFQLTAAQQRVWQELRTDLVTPHPMQRLLQGDVGSGKTVVAA 312

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +A   A+EAG QA  MAP  ILA+QHY+ +  +     I V  + G++  A ++      
Sbjct: 313 LAACQAIEAGYQAAFMAPTEILAEQHYQKLAGWLTPLGISVLWLAGSLKAAEKKLRQAEA 372

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLMT 427
           AH Q  +I+GTHAL QD++ + +L + IVDEQHRFGV QRL L +K     +APH L+M+
Sbjct: 373 AHAQ--LIVGTHALIQDAVDFSRLGIAIVDEQHRFGVAQRLALRKKGAHAGSAPHQLMMS 430

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T   D+D+S + E P GR PI+T ++   R  EVIER++   +EG++ YW
Sbjct: 431 ATPIPRTLAMTYFADLDVSVLDELPPGRTPIRTKLVSDARRGEVIERIRTACAEGRQVYW 490

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +CP IEE +  + +  ++    L E     ++ ++HGR+   +K   M  F  G  ++L+
Sbjct: 491 VCPLIEESEAIDLQPAIDTHALLTEALPEFAVGLVHGRLKADEKAWAMAEFNAGRTQVLV 550

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S CIL+Y  PLS+ +  
Sbjct: 551 ATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGTADSVCILIYAAPLSQTARE 610

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL ++    DGF IA  DL  R  GE +G +QSG P    A  E    L E AR  A+ +
Sbjct: 611 RLKIIYENTDGFEIARADLHLRGPGEFIGHRQSGAPLLRYADLETDVDLAERARDLAERL 670

Query: 667 LTQDP 671
           L  DP
Sbjct: 671 LRADP 675


>gi|319637789|ref|ZP_07992555.1| ATP-dependent DNA helicase RecG [Neisseria mucosa C102]
 gi|317400944|gb|EFV81599.1| ATP-dependent DNA helicase RecG [Neisseria mucosa C102]
          Length = 729

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/600 (38%), Positives = 344/600 (57%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK   +   M
Sbjct: 114 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEM 173

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP      S  +   L   +Y    GL+    ++II  AL   P L + +   LL +  
Sbjct: 174 IHPKIRDAESSGLAESLT-PIYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLK 231

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 232 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTATS 291

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q +   +PF+ T +QE  + +IL DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 292 LGGDGTLTQALRHALPFALTDAQEKVVSEILHDMAQTHPMHRLLQGDVGSGKTIVAALSA 351

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   + V  ++G+  +  + +A  ++A G
Sbjct: 352 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADG 411

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D +++  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 412 TVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRT 471

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE
Sbjct: 472 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEE 531

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEV
Sbjct: 532 SETLQLQTATETLAQLQAALPELNIGLVHGRMKAAEKAEVMAQFAVGRLNVLVATTVIEV 591

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+  
Sbjct: 592 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYE 651

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A  E    LLE AR+ A  ++ Q+P++
Sbjct: 652 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPLLIEQNPEI 711


>gi|148263926|ref|YP_001230632.1| ATP-dependent DNA helicase RecG [Geobacter uraniireducens Rf4]
 gi|146397426|gb|ABQ26059.1| ATP-dependent DNA helicase RecG [Geobacter uraniireducens Rf4]
          Length = 829

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 243/692 (35%), Positives = 377/692 (54%), Gaps = 24/692 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE-E 67
           L  P+   +GVG K +  L+K         +   D LF  P  + DR    KI  +    
Sbjct: 127 LETPMQFIKGVGPKLAENLAK------KGVSVVEDALFLLPHRYEDRRTLAKIGRLRPGA 180

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V     I+  ++     +R +++ + DG+G +TL +F+     +K ++  GRK   TG
Sbjct: 181 NEVFFAEVIAADAASTRGGKRFFEVTVGDGSGTVTLKWFHFNPAFMKKIWKPGRKGIFTG 240

Query: 128 KIKKLKNRIIMVHPHYIF----------HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           ++ +   +  + HP   +               ++F  I  VY L  GLS    +K++ E
Sbjct: 241 EVVQYGFQREVHHPEVEWLPEGEDLAAVMAGDPLSFGRILPVYPLTEGLSQKTLRKVMKE 300

Query: 178 ALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDE 232
           A+ R    +   +  +++ +     + +A    H P    D +      + A   LA+DE
Sbjct: 301 AVDRFVADVENHLPLEVIGRHDLMPLDKALQAAHFPANDADLQTLNNGATAAHRTLAFDE 360

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
               ++ L L +     E GI   V  K  +++L+ +PFS T +Q   + +I  DM   +
Sbjct: 361 FFFLELGLALKKNGIALEEGIDFQVTHKYTKELLKLLPFSLTNAQRRVLSEIKNDMMAPH 420

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++QGDVG GKTLVAL+A   AVE   Q  IMAP  ILA+QH+  I  +     + V
Sbjct: 421 PMHRLVQGDVGCGKTLVALMAALVAVENDYQVAIMAPTEILAEQHFLNIHHWCDALGVKV 480

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++T ++    ++ ALE IA G A ++IGTHA+ QD +++ +L L I+DEQHRFGV QR 
Sbjct: 481 ALLTSSLKGKAKKAALEEIATGNAQVVIGTHAVIQDKVEFRRLGLGIIDEQHRFGVLQRG 540

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L +K   P +L+MTATPIPRTL +T  GD+ +S I E P GR P++T I   +R  +V 
Sbjct: 541 ILKKKGQNPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPVETRIAFESRRSQVY 600

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDK 530
             ++  + +G++AY I P +EE ++S+ ++  +    L         + ++HGRM   +K
Sbjct: 601 GVIREEVKKGRQAYVIYPLVEESEKSDLKAAAQMAEQLQSDVFPDLRVGLLHGRMRPDEK 660

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E+VM +FK     +L+ATTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRVGRG + S
Sbjct: 661 EAVMAAFKARETDILVATTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVGRGSDKS 720

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            CILL    LS++   RL V+++T DGF IAE DL+ R  G+ LG +Q+G+P F +A   
Sbjct: 721 RCILLTTGRLSEDGEKRLRVMESTSDGFRIAEADLEIRGPGDFLGTRQAGLPDFRVANIL 780

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
               +LE AR +A   + +D  L +     +R
Sbjct: 781 RDGRILEEARMEAFSFVEKDRGLVAPENAGLR 812


>gi|123968352|ref|YP_001009210.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str.
           AS9601]
 gi|123198462|gb|ABM70103.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str.
           AS9601]
          Length = 815

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 241/649 (37%), Positives = 369/649 (56%), Gaps = 23/649 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ---HSSFQLQKRRPYKILLNDGTG 99
           DL+ Y P +++D   R KI  +  + + T    + +   H S +        I++ D T 
Sbjct: 148 DLINYFPRTYLDYTNRVKIINLKPDNLYTCIANVKRFYIHKSKKNSNLSIMNIVVFDETS 207

Query: 100 EITLLFFYRKTEMLKNVFFE--------GRKITVTGKIKKLKNRIIMVHPHY--IFHNSQ 149
            I +  F+         FF         G K+ ++GK+K  +     V P    +  N+ 
Sbjct: 208 SIKVTKFFLGKRFRSYSFFTSQKSLYTPGTKLAISGKVKLTEYGKTFVDPQIEILKDNND 267

Query: 150 DVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
           + NF   I  +YSL   LS   F K++ + L      PE + K  L   S  S  E+   
Sbjct: 268 NFNFSGKILPLYSLGEALSNMSFIKLMKKVLIYAKQYPEILNKKQLDSLSLLSKGESLIN 327

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK--IAQKIL 266
           IH P      +    +++RL +DEL   QI  LL +++ KK +  P  +  K  + ++ L
Sbjct: 328 IHFPPTQ---QALIESKKRLVFDELFLLQIKFLLRKRKTKKNVN-PQQLPQKKSLLKEFL 383

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
              PF  TKSQE+ + +I +D+S    M R+LQGDVGSGKT++A+ ++   +E   Q  I
Sbjct: 384 DTFPFELTKSQENVLNEIKKDLSNPVPMSRLLQGDVGSGKTIIAIASLLLVIEKNLQGAI 443

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           M P  +LA+QHY+ + KY     + VE++TGN PQ  R++    + +G   I++GTHALF
Sbjct: 444 MVPTEVLAEQHYKNLLKYLNPLFVSVELLTGNTPQKKRKEIFSNLNNGLVDILVGTHALF 503

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           +D + +  L +V++DEQHRFGV QR +L  K    ++L MTATPIPRTL L+  GD+D+S
Sbjct: 504 EDKVIFNALGMVVIDEQHRFGVTQRNRLLNKGENTNLLSMTATPIPRTLALSIYGDLDVS 563

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
           +ITE P GR PI T II  + +  + + ++  +++GK+AY I P IE+ ++ N  S  + 
Sbjct: 564 QITELPPGRVPITTKIISEDDLTNLFKIVEDEINKGKQAYVILPLIEDSEKMNLSSAKKT 623

Query: 507 FNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           F  L E   F   + ++HG++S  +K  V++SF      +L++TTVIEVGIDV +A+I+I
Sbjct: 624 FKHLSEEVFFNKKVGLLHGKLSSQEKNEVINSFLKNEINILVSTTVIEVGIDVPNATIMI 683

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I N++ FGL+QLHQLRGRVGRG   S C L+  P  +     RL VL+ + DGF IAE+D
Sbjct: 684 IYNSDRFGLSQLHQLRGRVGRGSTKSFCYLV-TPDKNGLENKRLCVLQKSNDGFYIAEKD 742

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           L+ R  G+ILG +QSG+P F++     +  L++ AR++A  I++ DPDL
Sbjct: 743 LELRGPGQILGYRQSGLPDFVLDNLPNNKFLIDKAREEAIKIVSDDPDL 791


>gi|294506159|ref|YP_003570217.1| ATP-dependent DNA helicase RecG [Salinibacter ruber M8]
 gi|294342487|emb|CBH23265.1| ATP-dependent DNA helicase RecG [Salinibacter ruber M8]
          Length = 700

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/681 (34%), Positives = 378/681 (55%), Gaps = 38/681 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISE-ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           DLL ++P  ++DR     +  + E    VT+ G +   +      ++  +I+L    G  
Sbjct: 35  DLLRFYPRRYLDRTTVTPVRRLQEGPDSVTVVGTVRSVNVVPGNNQKRLEIILEGEQGGR 94

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
               +++    ++  F EG ++   G ++K      M HP +   N +    PL++    
Sbjct: 95  MKGTWFQGVWWVRKAFDEGDRVAFHGTVEKYGRWHSMTHPDFDRLNDEG---PLLDTGRI 151

Query: 162 LP----------TGLSVDLFKKIIVE-----ALSRLPVLPEWIEK--DLLQKKSFPSIAE 204
           +P           GL+    ++++ +      L     +P+WI    DL++ +       
Sbjct: 152 VPLYPGGEAMSNVGLTSRTVRRVLYDLFKEHGLKLTETMPDWIMDGYDLMEGRV------ 205

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
           A   IH P+  ++    S A+ RL ++EL   Q+ L  M +Q ++  G   +  G   ++
Sbjct: 206 ALRAIHFPKTQQEL---SRAQRRLKFEELFFIQLLLAQMHEQQEEVAGPAFDDPGAYTRE 262

Query: 265 ILRNI-PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            +R + PF  T +Q  A+++I+ D+    +M R+LQGDVGSGKT+VA+ AM  A ++G Q
Sbjct: 263 FVREVLPFELTGAQTRALREIIGDVQTGTQMNRLLQGDVGSGKTVVAVAAMMHAYDSGYQ 322

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +  MAP  ILA+QH+  ++ Y Q   +   ++ G+  +A R  AL+ +  G++ + +GTH
Sbjct: 323 SAFMAPTEILAEQHHANLQDYLQPLGLEPRLLIGSQTKAEREAALQAVRSGESPVAVGTH 382

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
           AL QD + + +L L +VDEQHRFGV QR ++ +K   PH+LLMTATPIPR+L LT  GD+
Sbjct: 383 ALIQDEVAFDRLGLAVVDEQHRFGVAQRAEMFEKGERPHMLLMTATPIPRSLALTLYGDL 442

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           D+SKI E P GRKP++T +    R  EV   L   L +G++A+ + P +EE ++ + +  
Sbjct: 443 DVSKIDEMPPGRKPVETRLRAEKRRGEVYAFLNDRLEQGEQAFVVYPLVEESEKMDLKDA 502

Query: 504 VERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
                 L E F   ++ ++HG++S  DK++ M  FK G   LL+ATTVIEVG+DV +A++
Sbjct: 503 ESGAQELQEKFPDYTVGLVHGQLSADDKDATMRRFKKGDIDLLVATTVIEVGVDVPNATV 562

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           +++E+AE FGL+QLHQLRGRVGR ++ S C+L+     S+ +  RL  +  T DGF I+E
Sbjct: 563 MLVEHAERFGLSQLHQLRGRVGRSDQQSYCVLMASYKRSQEAKQRLEAMARTNDGFEISE 622

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
            DL+ R  G+  G +QSGMP   IA     D +LE+AR+ A  ++ +DP L +   + +R
Sbjct: 623 TDLQIRGAGDFFGTRQSGMPDLKIADLTEDDEILEVAREAAFALIEKDPHLRADEHERLR 682

Query: 683 ILLYLYQYNEA---FQFIRAG 700
              + YQ + A     F R G
Sbjct: 683 ---HRYQEDYAEHGLGFARVG 700


>gi|307297520|ref|ZP_07577326.1| ATP-dependent DNA helicase RecG [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916780|gb|EFN47162.1| ATP-dependent DNA helicase RecG [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 785

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/648 (35%), Positives = 365/648 (56%), Gaps = 37/648 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99
           DL+ Y P  + DR     IS I  +R V++ G +    +F  +K   Y I+   ++DG G
Sbjct: 134 DLIQYFPRDYEDRRIIMPISSIVPDRKVSVKGRLL---NFSAKKASGYTIISAVVSDGFG 190

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA- 158
           ++ L +F +                +  K+++ +  +I            ++N P IE  
Sbjct: 191 QLLLKWFNQDY--------------IIQKLRRDREYLIHGLAKETPFGPMEMNSPEIEEI 236

Query: 159 ----------VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
                     VYSL +G+S+ + +KI+   L  +  L + +   +  ++       AF  
Sbjct: 237 QGEVPREILPVYSLTSGISMKMMRKIVKRNLGLVRSLDDLVPSSITTERGLLPRKHAFTA 296

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILR 267
           IH P   K       ARE LAY+E    +  +L  ++Q +KE  G+   + G ++++++ 
Sbjct: 297 IHFP---KSLYEIRKARESLAYEEFFLFETTILFRKRQIRKEYQGLQKEISGVLSKRLIE 353

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF  TK Q +A ++I  DM   + M R+LQGDVGSGKTLVA +AM    EAG Q+ +M
Sbjct: 354 SLPFELTKDQVTAFEEIRDDMRAASPMNRLLQGDVGSGKTLVAELAMVDNYEAGYQSALM 413

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA QHYE IK+      I   ++TG++ +  +     R+  G+  +++GTHAL Q
Sbjct: 414 VPTSVLAMQHYEKIKRELSPIGIETGLLTGSLKKNEQDFVRMRLKKGEIDVVVGTHALIQ 473

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +++  L LV+VDEQHRFGV+QR  LT K      L+MTATPIPRTL LT  GD+DIS 
Sbjct: 474 DGVEFKNLGLVVVDEQHRFGVKQRETLTTKGKLLDSLVMTATPIPRTLALTVYGDLDIST 533

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I   P GR P++T+I+   R+ ++   +   L  G +A++I P IEE ++ + ++  +  
Sbjct: 534 ILTLPKGRSPVRTIILARKRLKDLYSYISDELKMGHQAFFIYPLIEESEQVDLKNATDEA 593

Query: 508 NSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             L E     + +  +HGR++D +K+ +M  F++    +L++TTV+EVGID+  A++++I
Sbjct: 594 TKLREEVFPGVGVELLHGRLNDNEKQEIMQRFRSRQSMILVSTTVVEVGIDIPTATVMVI 653

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           E+ E FG+AQLHQLRGRVGR    S C+++ +  +S ++ +RL    +T  GF +AE DL
Sbjct: 654 EHPERFGMAQLHQLRGRVGRSNLKSICVMVMNKAISDDALSRLREFASTSSGFDVAELDL 713

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           + R  GE LG++Q GMP+FLI        LL  AR+DAK ++ +DP+L
Sbjct: 714 RLRGPGEFLGLRQHGMPQFLIGDIVNDRDLLFKAREDAKQLMEEDPEL 761


>gi|300867528|ref|ZP_07112179.1| ATP-dependent DNA helicase recG [Oscillatoria sp. PCC 6506]
 gi|300334522|emb|CBN57349.1| ATP-dependent DNA helicase recG [Oscillatoria sp. PCC 6506]
          Length = 832

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 235/677 (34%), Positives = 379/677 (55%), Gaps = 31/677 (4%)

Query: 27  LSKIINCGNANETRF--------IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           L+++   G  N  R          DLL+Y+P   ID   +  I E++    VT+   + +
Sbjct: 139 LNRVTGIGPNNGNRLGKLGLLTVYDLLYYYPRDHIDYARQVSIRELAAGETVTLVATVKR 198

Query: 79  HSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKT--------EMLKNVFFEGRKITVTG 127
            + F   K     IL   L D TG+I L  F+           E  K  +  G  +  +G
Sbjct: 199 CNCFSSPKNNKLTILELILTDRTGQIKLNRFFHGNRYSNRGWQEQQKRYYPVGAVVAASG 258

Query: 128 KIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
            +K+ K  + + +P     +S     +      +  VY L  G+   + ++ +  AL  +
Sbjct: 259 LVKQGKYGVTLENPEIEVLDSDGGTIESATVGRLVPVYPLTDGVDAGVVRRGMAAALPAV 318

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E + + L  + S   IA+A + IH P    D +  S +R RL +DE    Q+ LL 
Sbjct: 319 KQVQESLPESLRDRYSLMGIADALSNIHFP---LDRDCLSASRRRLVFDEFFYLQLGLLK 375

Query: 243 MRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            R+  +K     + +  G++       IPF  T +Q+  I +IL D++    M R++QGD
Sbjct: 376 RRQMHRKAQASAVLIPNGELLNNFYNIIPFKLTNAQQRVINEILNDLASPEPMNRLVQGD 435

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKT+VA++A+ AA+++G QA +MAP  +LA+QHY  +  +     + VE++TG+   
Sbjct: 436 VGAGKTVVAVVAILAAIQSGYQAALMAPTEVLAEQHYRKLVGWLNLMHLPVELLTGSTKV 495

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A RR+   ++  GQ  +++GTHAL QD++ + KL LV++DEQHRFGVQQR KL QK  +P
Sbjct: 496 AKRREIHSQLETGQLKVLVGTHALIQDTVNFDKLGLVVIDEQHRFGVQQRAKLQQKGESP 555

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           HVL MTATPIPRTL LT  GD+D+S I E P GR+ I+T I+      +  E ++  +  
Sbjct: 556 HVLTMTATPIPRTLALTLHGDLDVSLIDELPPGRQAIQTTILTGKERSQAYELIRREVGG 615

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKN 539
           G++ Y + P +EE ++ + RS +E    L         + ++HGRM+  +K+  +  F++
Sbjct: 616 GRQVYVVLPLVEESEKLDLRSAIEEQEKLKTTIFPEFKVGLLHGRMTSAEKDEAITKFRD 675

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L++TTV+EVG+DV +A++++IEN E FGL+QLHQLRGRVGRG + S C+L+    
Sbjct: 676 RETHILVSTTVVEVGVDVPNATVMLIENCERFGLSQLHQLRGRVGRGSDRSYCLLMRGSN 735

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +  +  R+ VL+ ++DGF IAE D++ R  G++LG +Q+G+P F +A       +LE+A
Sbjct: 736 -AGEALQRMKVLEQSQDGFFIAEMDMRLRGPGQVLGTRQAGLPDFALASLVEDQEVLELA 794

Query: 660 RKDAKHILTQDPDLTSV 676
           R+ AK ++ +D  L  +
Sbjct: 795 REAAKRVIDEDERLNQM 811


>gi|255066129|ref|ZP_05317984.1| ATP-dependent DNA helicase RecG [Neisseria sicca ATCC 29256]
 gi|255049674|gb|EET45138.1| ATP-dependent DNA helicase RecG [Neisseria sicca ATCC 29256]
          Length = 704

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 231/600 (38%), Positives = 342/600 (57%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 89  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQMAAGKRIRAVGEIKHGFYGDEM 148

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 149 IHPKIRDAEGSGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLK 206

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +      S    PA +RL +DELLA Q+++ L R++        
Sbjct: 207 LPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 266

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q +   +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 267 LGGDGTLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSA 326

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G QA +MAP  ILA+QH+   K++ +   + V  ++G+  +  + +A  ++A G
Sbjct: 327 LTAIESGAQAAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADG 386

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D +++  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 387 TVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRT 446

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE
Sbjct: 447 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEE 506

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEV
Sbjct: 507 SETLQLQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEV 566

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S CILL+  PLS+ +  RL V+  
Sbjct: 567 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCILLFAEPLSELAKARLKVIYE 626

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A  E    LLE AR+ A  ++ Q+P++
Sbjct: 627 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPMLIEQNPEI 686


>gi|119357864|ref|YP_912508.1| ATP-dependent DNA helicase RecG [Chlorobium phaeobacteroides DSM
           266]
 gi|119355213|gb|ABL66084.1| ATP-dependent DNA helicase RecG [Chlorobium phaeobacteroides DSM
           266]
          Length = 707

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 254/727 (34%), Positives = 390/727 (53%), Gaps = 52/727 (7%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
           +  + + L   +GVG + +  LS+  I + G        DL  Y P  ++DR    +ISE
Sbjct: 1   MTTMRSSLRALQGVGPRRADTLSEAGIHDVG--------DLYDYFPRRYLDRRAMRRISE 52

Query: 64  ISEERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           +     VT+ G + +     Q   R  +K+LL D TG + L++F R       +   G  
Sbjct: 53  LLNGETVTVVGRVLKTVQEGQGVARSRFKVLLADETGVLELVWF-RGVRYFSKMLATGDV 111

Query: 123 ITVTGKIKKLKNRIIMVHPHY-------------------IFHNSQDVNFPLIEAVYSLP 163
           + V GK+     +  M HP +                   ++H  +      I ++YS  
Sbjct: 112 LAVFGKVGYFGRQAQMQHPDFDKLGSGVQASGSGESSDLELYHTGR------IISLYSTS 165

Query: 164 -----TGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
                 GLS    + I+++A     P   E + +++L       + EA+  IH P     
Sbjct: 166 DAMKQAGLSSRQLRMILLKAFDDHPPGREENLSEEMLAAHGLMPLGEAYREIHFPATQ-- 223

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKS 276
            E  + AR RL + EL   Q+   L R++ ++ +     +  G+I +K+   +PF  T +
Sbjct: 224 -ETLAAARYRLKWTELFYAQLLFALRRQEIRQNKTAARFDHSGEITRKLYEALPFDLTGA 282

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q++ I++I QD+     M R+LQGDVGSGKTLVA+ ++A A + G Q+  MAP  ILA Q
Sbjct: 283 QKTVIREIYQDLRSGCPMNRLLQGDVGSGKTLVAMFSIALAADNGLQSAFMAPTEILAVQ 342

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY  +K+  Q   + V +++G   +  R   L  + +G   I +GTHA+ ++ +    L 
Sbjct: 343 HYLALKRAFQPLGLNVGLLSGRQRKKERDAVLGDLRNGTIAIAVGTHAMIEEGVTMAALG 402

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI+DEQHRFGV QR  L +KA  PHVLLMTATPIPRTL +   GD+D+S I E P GR+
Sbjct: 403 LVIIDEQHRFGVLQRKALQEKALNPHVLLMTATPIPRTLCMGVFGDLDVSVINEMPPGRQ 462

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           P+ T ++  N   E    +   + +G++AY + P +EE ++ + ++ V+RF+ L  +  S
Sbjct: 463 PVVTKLLAGNETGEAYTSIIREVQKGRQAYIVYPMVEESEKIDLKAAVDRFDFLTANIFS 522

Query: 517 S--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              + +IHGRM+   KESVMD F+NG   +L+ TTVIEVG+DV +A+I++IE+AE FGLA
Sbjct: 523 DLRLGLIHGRMTTESKESVMDEFRNGRIDVLVGTTVIEVGVDVPNATIMMIEHAERFGLA 582

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG   S+C L Y    + ++  RL  +++  DGF I++ D + R  G IL
Sbjct: 583 QLHQLRGRVGRGSHPSTCFLCYEKT-APDALRRLHAMESVADGFRISKIDAEIRGTGNIL 641

Query: 635 GIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           G +QSG    L IA  +  +++L IAR +A  ++ +D  L       IR   YL  Y+E 
Sbjct: 642 GKEQSGAASGLKIADLQHDEAILNIARTEAFALVAKDSQLRMPEHAMIRT-CYLRHYHER 700

Query: 694 FQFIRAG 700
           +     G
Sbjct: 701 YALADIG 707


>gi|163788712|ref|ZP_02183157.1| ATP-dependent DNA helicase [Flavobacteriales bacterium ALC-1]
 gi|159875949|gb|EDP70008.1| ATP-dependent DNA helicase [Flavobacteriales bacterium ALC-1]
          Length = 700

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 249/679 (36%), Positives = 379/679 (55%), Gaps = 23/679 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG   +  L   ++        + DL+   P+ +IDR    KI+E+    
Sbjct: 5   LQTPIDYLKGVGPNRADLLRSELDIHT-----YQDLINLFPNRYIDRTKYYKINELQRNN 59

Query: 69  I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V + G I+       ++ +       D TG + L++F R  + ++     G+   + G
Sbjct: 60  AEVQVIGVITGFREVAQKRGKRLVADFKDDTGSMELVWF-RGQKWIRESLKTGKPYVIFG 118

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLS-VDLFKKIIVEALSRLPV- 184
           K     ++  M HP        D N    ++A+Y     LS   +  ++I + + +L + 
Sbjct: 119 KTNWFSSKYSMPHPEIELQTEHDNNLRSAMQAIYPSTEKLSNKGITNRVITKIMQQLFLD 178

Query: 185 ----LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
                 E +   ++++    S ++A   IH P+     E  S A+ RL ++EL   Q+ L
Sbjct: 179 TKGKFVETLSDLVMRELKLISKSDALFNIHFPKTP---ELLSKAQFRLKFEELFYIQLQL 235

Query: 241 LLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +L     K +I G P    G        + +PF  T +Q+  +K+I QD+    +M R+L
Sbjct: 236 ILKNLIHKSKIKGFPFEKVGDYFNTFYNSHLPFELTNAQKRVLKEIRQDLGSNAQMNRLL 295

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA ++M   ++ G Q  +MAP  IL+ QHY  +K+      I + ++TG+
Sbjct: 296 QGDVGSGKTIVAFMSMLVGLDNGFQCCLMAPTEILSVQHYNGLKELCNKLNIRISLLTGS 355

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              + RRK  E + +G   I+IGTHAL +D +++  L L I+DEQHRFGVQQR KL  K 
Sbjct: 356 SKTSERRKIHENLENGNLQILIGTHALLEDKVKFKNLGLAIIDEQHRFGVQQRSKLWHKN 415

Query: 419 TAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
           T+P HVL+MTATPIPRTL ++  GD+DIS I E PAGRKPIKTV    N   +V + +K 
Sbjct: 416 TSPPHVLVMTATPIPRTLAMSVYGDLDISVIDELPAGRKPIKTVHRFDNNRLKVFKFIKD 475

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVM 534
            +++G++ Y + P I+E ++ +++ +++ + S+   F      I+I+HG+M   DK+  M
Sbjct: 476 EIAKGRQIYVVYPLIQESEKMDYKDLMDGYESISREFPMPKYQISIVHGKMKPDDKDYEM 535

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G   +++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E S CIL
Sbjct: 536 QRFVRGETNIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGAEQSFCIL 595

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +    LS+NS TRL  +  + DGF IAE DLK R  G+I+G +QSG+    IA       
Sbjct: 596 MTSHKLSQNSKTRLETMVRSSDGFEIAEVDLKLRGPGDIMGTQQSGVLNLRIADIVKDKD 655

Query: 655 LLEIARKDAKHILTQDPDL 673
           +LE AR  AK +L  DP L
Sbjct: 656 ILEQARYYAKSVLKLDPSL 674


>gi|158320474|ref|YP_001512981.1| ATP-dependent DNA helicase RecG [Alkaliphilus oremlandii OhILAs]
 gi|158140673|gb|ABW18985.1| ATP-dependent DNA helicase RecG [Alkaliphilus oremlandii OhILAs]
          Length = 678

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 244/667 (36%), Positives = 383/667 (57%), Gaps = 22/667 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +GVG K +  L+K+      N   F D++++ P  + DR    KI+++      T  GY
Sbjct: 11  LKGVGPKKAYLLNKL------NIKTFKDMIWHFPRDYEDRGNIRKIAQLIPGEKTTFYGY 64

Query: 76  ISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
           I   +     K+     K ++ D TG++ ++FF +    LK     G+++ + G++KK  
Sbjct: 65  IYGEAEISKPKKNMSLIKFIVKDETGQVEIVFFNKV--YLKKAITSGQRVMINGEVKKTF 122

Query: 134 NRIIMVHP--HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIE 190
             + +V+P    I    ++    ++  +Y    GLS +   KI  + +  +   + E++ 
Sbjct: 123 KGMQIVNPVLEKINQEEEEGRHGIV-PIYPSTEGLSQNEILKIQRDMIRVVKESIVEYLP 181

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
            +L++K     I  A   IH P   K  +    A+ RL ++E L  Q+ LL ++K   KE
Sbjct: 182 DELIKKHKLCHIQFALENIHFPNSVKSLKI---AKYRLVFEEFLFLQLGLLKIKKDHTKE 238

Query: 251 I-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
             GI +  +  I ++ + ++PF+ T +Q+  +K+I QD+ +   M R++QGDVGSGKT+V
Sbjct: 239 KEGIVLKKKEGI-EEFIESLPFTLTAAQDKVVKEICQDLERDIPMNRLVQGDVGSGKTIV 297

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A+IA+  AV  G Q  +MAP  ILA+QHY  +        I V ++ G++ ++ + K L 
Sbjct: 298 AIIALFKAVINGYQGAMMAPTEILAEQHYLSLTDLLSPFGIHVGLLVGSLSKSEKNKILN 357

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            I  G+ +I++GTHAL Q+ + +  L LVI DEQHRFGV+QR  LT K   PHVL+MTAT
Sbjct: 358 GIETGEINIVVGTHALIQEGVNFANLSLVITDEQHRFGVRQRSTLTSKGNNPHVLVMTAT 417

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L   GD+DIS I   P GRK IKT     N+  E+   L   L EG++AY +C
Sbjct: 418 PIPRTLALILYGDLDISIIDHLPPGRKCIKTYSRTSNKRKEIYNFLGKQLDEGRQAYVVC 477

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           P +EE +  + +S  E    L         + ++HG+M   DKE +M +FK G  ++L++
Sbjct: 478 PLVEESEAIDAQSATEIAEELSCDLLKGYKVGLLHGKMPPKDKEEIMKAFKEGNIQVLVS 537

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG++V +A+++++ENAE FGLAQLHQLRGRVGRG   S CIL+ +   S+ S  R
Sbjct: 538 TTVIEVGVNVPNATMMVVENAERFGLAQLHQLRGRVGRGSHQSYCILINNSK-SEISKAR 596

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +++++ T DGF+I+E+DL+ R  GE  G +Q G+P+  IA    H S+L+  + + + I 
Sbjct: 597 MAIMEKTTDGFVISEKDLELRGPGEFFGTRQHGLPELKIANLFKHLSVLKTVQAEVESIA 656

Query: 668 TQDPDLT 674
            +D  LT
Sbjct: 657 EEDFSLT 663


>gi|312879670|ref|ZP_07739470.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM
           12260]
 gi|310782961|gb|EFQ23359.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM
           12260]
          Length = 686

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/668 (33%), Positives = 357/668 (53%), Gaps = 15/668 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+S   GVG +    LS++            D LF  P  + DR     + E+ E R   
Sbjct: 10  PVSRLPGVGPRREAGLSRL------GVRTLRDALFLFPRRYEDRRRLTPLEELQEGRPAL 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
             G + + SS + Q +   + LL+D TG + LL+F+R    +      G +    G+  +
Sbjct: 64  FRGRVGELSSQRSQGKHRVRGLLSDPTGCLRLLWFHRPG--VAAQLPPGTEAVFWGRPAR 121

Query: 132 LKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189
             + ++ V+P +   +  Q   +  I  VY    GL     +  ++  + R  P +PE +
Sbjct: 122 FGDALVCVNPEFWTGSVPQGEEWGRIVPVYPGTEGLPPRWLRSFLLSQVERCAPQIPEEL 181

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            + L++++    + EA   +H P    +  W   AR RLAY ELL  Q+   L R+    
Sbjct: 182 PESLIRRRGLLPLKEAVRQLHAP--DDEVRWRE-ARRRLAYQELLELQVPFALRRRAAAS 238

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                +  E  ++++   ++PF PT  Q  A++ +  D+  ++ M R+LQGDVGSGKTLV
Sbjct: 239 LPPPVLRCEKGVSERFWADLPFDPTPGQREALRALEADLGGRHPMNRLLQGDVGSGKTLV 298

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           AL A+   +  G Q   +AP  ILA+Q +E  ++        V+++ G      R +  E
Sbjct: 299 ALGALHLVLRGGAQGAYLAPTEILARQVWEVARRLPALAPFPVDLVLGGRSLREREEQAE 358

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +   +  +++GTHAL +DS+++ +L L ++DEQHRFGV QR  L  K  +PH+L+MTAT
Sbjct: 359 ALERPEPRLVVGTHALLEDSVRFSRLGLAVIDEQHRFGVAQRAALAAKGRSPHLLVMTAT 418

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L   GD+    + + P GR P+ T ++    +  V+  L+  L+ G +A+W+C
Sbjct: 419 PIPRTLSLALFGDLSSLALRDLPPGRSPVVTRVLGQKDLRRVLAFLRQELARGGRAFWVC 478

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P +EE + +     ++R  +L      S   ++HGR+    K + ++ F++G  +LL+ T
Sbjct: 479 PLVEESEGTGLPGAMQRREALARALPESCPEVVHGRLDGAAKAAALERFRSGESRLLVGT 538

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TV+EVGIDV +A+++++E+ E FGL+QLHQLRGRVGRG     C+LL      ++S  RL
Sbjct: 539 TVLEVGIDVPEATVMVVEHGERFGLSQLHQLRGRVGRGSSRGVCLLLSGTE-EEDSLRRL 597

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            +L+   DGF IAE D   R  GE+ G++Q G   F +A   +  +LLE AR+DA+  + 
Sbjct: 598 RILERIGDGFRIAEADCALRGGGEMGGVRQHGDSGFKVADLRVDAALLEQARQDAQDWVD 657

Query: 669 QDPDLTSV 676
            +P L S 
Sbjct: 658 AEPALDSC 665


>gi|256823635|ref|YP_003147598.1| ATP-dependent DNA helicase RecG [Kangiella koreensis DSM 16069]
 gi|256797174|gb|ACV27830.1| ATP-dependent DNA helicase RecG [Kangiella koreensis DSM 16069]
          Length = 700

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 254/645 (39%), Positives = 375/645 (58%), Gaps = 27/645 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI--SEERI 69
           P ++ +GVG K +  L K+      +    +DLLF+ P  + DR     I+ +   E  +
Sbjct: 16  PCTSLKGVGPKVAEKLEKL------HIQSVLDLLFHLPLRYEDRTRVRTIASLKDGERAL 69

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + +T  ++Q    +  KRR      +D +  I   FFY      +     G +    G++
Sbjct: 70  IKVTVELAQ---VKFGKRRSLVCRASDESASIDFRFFYFNKGQ-QQRLQRGAEFYAFGEV 125

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           ++   +  MVHP     NS   + PL+E+   +Y    GL    F+ ++ +A++ L   P
Sbjct: 126 RRYGFQFSMVHPELTAINS-TTSAPLLESLTPIYPATEGLHQASFRHMMRQAVALLKKHP 184

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240
               + + LLQ    P +  +   IH+P K  D        +PA  RL  +ELLA Q++L
Sbjct: 185 IDNLLPQSLLQSLKLPDVNASLAWIHSPPKDADLVQLQSNQTPAVRRLISEELLAQQLSL 244

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           LL R Q K      +   GK+  ++L+ +PF PTK+Q+   ++I+ D+ Q + MLR+LQG
Sbjct: 245 LLQRNQQKDYSAPVLKNSGKLQDQLLQQLPFKPTKAQQRVTQEIISDLEQPHPMLRLLQG 304

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG+GKTLVA +A   A+EAG Q  IMAP  +LA QHY+   ++ +   I    +   + 
Sbjct: 305 DVGAGKTLVAALAALQAIEAGYQVAIMAPTELLANQHYQSFGQWFEAMNIPCVFLASKLT 364

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            + R+ ALE IA G+A +I+GTHALFQ  ++Y+KL L I+DEQHRFGV QRL L QKA  
Sbjct: 365 ASQRKSALESIASGEAKLIVGTHALFQKGVEYHKLGLAIIDEQHRFGVNQRLMLKQKAPD 424

Query: 421 P---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
               H L+MTATPIPRTL +T   D+D+S I E P GR P++TV +   + D+VI+R++ 
Sbjct: 425 GMQLHQLMMTATPIPRTLAMTVYADMDVSIIDELPPGRTPVQTVALSDQKRDQVIQRIET 484

Query: 478 VL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMD 535
               E ++ YW+C  I+E +E   ++     N L E   +  + ++HGR+    K+ VMD
Sbjct: 485 ACRDENRQVYWVCTLIDESEEIQCQAAESAANLLTEQLPNCRVGLLHGRLKPEQKQLVMD 544

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +L+ATTVIEVG+DV +AS+++IEN E  GL+QLHQLRGRVGRG   S C+LL
Sbjct: 545 KFKQGDLDILVATTVIEVGVDVPNASLMVIENPERLGLSQLHQLRGRVGRGSVESHCVLL 604

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           Y  PLS N+  R+ V++ T DGF+IAEEDL+ R  GE+LG +Q+G
Sbjct: 605 YQHPLSDNAKARIQVMRETNDGFVIAEEDLRLRGPGEMLGTRQTG 649


>gi|331009375|gb|EGH89431.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 488

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/457 (44%), Positives = 298/457 (65%), Gaps = 6/457 (1%)

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           A+ RLA++ELL  Q++   +R+  + +    + V  K+ ++ L N+ F+PT +Q+   K+
Sbjct: 17  AQHRLAFEELLTHQLSQQRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKE 76

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           +  D+SQ   MLR++QGDVGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   ++
Sbjct: 77  VAYDLSQPEPMLRLIQGDVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQR 136

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
           + +   + V  + G +    R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQ
Sbjct: 137 WLEPLGVGVAWLAGKLKGKARATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQ 195

Query: 404 HRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           HRFGVQQRL L +K       PH L+MTATPIPRTL +++  D+D S + E P GR P+ 
Sbjct: 196 HRFGVQQRLALRKKGVGGLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVN 255

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           TV++  +R  EV+ER++   +EG++AYW+C  IEE +E   ++    +  L        +
Sbjct: 256 TVLVADSRRLEVVERVRAACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRV 315

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            +IHGRM   +K ++M  FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQ
Sbjct: 316 GLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQ 375

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG  +S C+LLYHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q
Sbjct: 376 LRGRVGRGSAVSHCVLLYHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQ 435

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           +G+ +F +A       LL   R  A+ +L + P   S
Sbjct: 436 TGLLQFKVADLMRDADLLPAVRDAAQALLERWPQHVS 472


>gi|82523708|emb|CAI78489.1| RecG-like helicase [uncultured beta proteobacterium]
          Length = 678

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/644 (36%), Positives = 355/644 (55%), Gaps = 15/644 (2%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR  DL+ + P  + D      I ++   +   +   + + +    + RR   + + D +
Sbjct: 25  TRDADLVLHLPLRWEDETRITPIRDLLPGQTAQVQAVVRE-AKVAYRPRRTLTVTVEDAS 83

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL--- 155
           G + L F       LK +F  G    + G+++     + MVHP +   +  D + PL   
Sbjct: 84  GVLGLRFLNFYPSHLK-LFQPGEHFRINGEVRGGFLGLEMVHPRF---SKADDSTPLPTQ 139

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
           +  VY    GL     +K++  AL   P+  + +    L +   P +  +  ++H P   
Sbjct: 140 LTPVYPTTAGLGQATLRKLVTRALE-APIT-DTLPAAWLTELGLPELESSIRLLHQPPHD 197

Query: 216 KDF-EWTS---PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
               E  S   PA +RLA+DELLA QI+L   R+Q + +   P+  + ++     + +PF
Sbjct: 198 SALAELESHRHPAWQRLAFDELLAQQISLATSRRQRRSQRTTPLPAKQQLTTVFTQTLPF 257

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T +Q  A ++I  D+ Q + M R+LQGDVGSGKT+VA +A   A+E G QA  MAP  
Sbjct: 258 ELTSAQAHAWQEISADLEQPHPMRRLLQGDVGSGKTVVAALACLQAIENGLQAAFMAPTE 317

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+QHY  +        +    ++G+  ++ R  A + IA G+  +  GTHALFQ++  
Sbjct: 318 ILAEQHYRKLASPLSALGVRCAWVSGSQKKSERTAAWQAIAAGEIDLAFGTHALFQEAGS 377

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           + +L L +VDEQHRFGV QRL L QK   PH L+M+ATPIPRTL ++   D+D+S I   
Sbjct: 378 FARLGLAVVDEQHRFGVGQRLALMQKGIEPHQLMMSATPIPRTLAMSFFADLDVSVIDAL 437

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P GR P+ T ++   R D+V+ R++     G +AYW+CP IEE ++   ++  +   +L 
Sbjct: 438 PPGRTPVVTKLVSAARRDDVVARIREACLAGGQAYWVCPLIEESEKLQLQTAQDTHAALA 497

Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  I ++HGR+   +K++VM +F+     LL+ATTVIEVG+DV +A++++IE+AE 
Sbjct: 498 AQLPELRIGLVHGRLKSNEKQAVMAAFQAHEIDLLVATTVIEVGVDVPNAALMVIEHAER 557

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
            GLAQLHQLRGRVGRG   S C+LLY  P+S+ +  RL  +    DGF IA +DL  R  
Sbjct: 558 MGLAQLHQLRGRVGRGSRESVCVLLYQTPVSELARARLKAIFELTDGFEIARQDLLLRGP 617

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           GE+LG +QSG+P    A  E   +LLE AR  A+  L   PD+ 
Sbjct: 618 GELLGSRQSGLPMLRFADLERDVALLESARNLAQWCLNTHPDIA 661


>gi|241759124|ref|ZP_04757233.1| ATP-dependent DNA helicase RecG [Neisseria flavescens SK114]
 gi|241320620|gb|EER56890.1| ATP-dependent DNA helicase RecG [Neisseria flavescens SK114]
          Length = 729

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/600 (38%), Positives = 342/600 (57%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 114 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQMAAGKRIRAVGEIKHGFYGDEM 173

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 174 IHPKIRDAEGSGLAESLT-PVYPTVNGLNQSTLRRIIQTALDVTP-LHDTLPDALLGRLK 231

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +      S    PA +RL +DELLA Q+++ L R++        
Sbjct: 232 LPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 291

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q +   +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA +++
Sbjct: 292 LGGDGTLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSV 351

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G QA +MAP  ILA+QH+   K++ +   + V  ++G+  +  + +A  ++A G
Sbjct: 352 LTAIESGAQAAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADG 411

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D +++  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 412 TVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRT 471

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE
Sbjct: 472 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEE 531

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEV
Sbjct: 532 SETLQLQTATETLEQLQTALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEV 591

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+ E  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+  
Sbjct: 592 GVDVPNAALMVIEHVERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYE 651

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A  E    LLE AR+ A  ++ Q+P++
Sbjct: 652 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPMLIEQNPEI 711


>gi|325982473|ref|YP_004294875.1| ATP-dependent DNA helicase RecG [Nitrosomonas sp. AL212]
 gi|325531992|gb|ADZ26713.1| ATP-dependent DNA helicase RecG [Nitrosomonas sp. AL212]
          Length = 679

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 228/645 (35%), Positives = 358/645 (55%), Gaps = 14/645 (2%)

Query: 42  IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           +DL+ + P  + D  +   I +  +   V + G I  H+   ++ RR     + D +G +
Sbjct: 20  LDLILHLPIRYEDETHLFPIGDAPQGHTVQVEGVII-HNEVVIRPRRQLICRIEDSSGIL 78

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            + F    +  +K  +  G+++ + G+I+       MVHP      + +     +  +Y 
Sbjct: 79  VMRFVNFYSSQIKT-YAVGKRVRLLGEIRNGFFGAEMVHPKCRIVRAGESLAHSMTPIYP 137

Query: 162 LPTGLSVDLFKKIIVEALSR---LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              GL      KII + L     +  L E +   +++K       E+   +H+P   +  
Sbjct: 138 TTAGLMQKTLAKIIKQGLHNAQMVQALIETVPDKIIRKYRLKGFEESVMCLHHPSPEESI 197

Query: 219 EW----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           E     T PA  R+ +DELLA Q+++ L  +Q +      +  +  +A+++L  + F  T
Sbjct: 198 EALQTRTHPAWRRIKFDELLAQQLSMRLHYRQRRSHTAPVLEQKNILAKQLLAQLGFELT 257

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            +Q     +I  D++    M R+LQGDVGSGKT+VA +A   A+E G QA IMAP  ILA
Sbjct: 258 SAQLKVYAEIGHDLTVAYPMQRLLQGDVGSGKTIVAALAALQAIENGFQAAIMAPTEILA 317

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH+  +  + +   + V  ++G M +  ++  +++I  G A +++GTHALFQ  + +++
Sbjct: 318 EQHFMKLSAWLEPLGVHVAWLSGGMRKKQKQAEMDKIESGVAQLVVGTHALFQYQVVFHQ 377

Query: 395 LILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           L L I+DEQHRFGV QRL L  K       PH L+M+ATPIPRTL ++   D+D+S I +
Sbjct: 378 LGLAIIDEQHRFGVHQRLALRMKGAQSDLMPHQLMMSATPIPRTLSMSYFADLDVSIIDQ 437

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P GR P+ T +I   R DE+I R+     + ++ YW+CP IEE +    ++ +E +  L
Sbjct: 438 LPPGRSPVITKLIADRRRDEIIARIHFACQQDRQVYWVCPLIEESEALQLQAAMETYQHL 497

Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            + F   ++ ++HGR+S  +K  +M  FK G  +LL+ATTVIEVG+DV +AS+++IENAE
Sbjct: 498 RKIFPELNVGLVHGRLSPQEKAEIMLLFKEGKIQLLVATTVIEVGVDVPNASLMVIENAE 557

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
             GL+QLHQLRGRVGRG + S CILL+  PLS+ +  RL ++    DGF IA +D++ R 
Sbjct: 558 RMGLSQLHQLRGRVGRGSDASICILLFQQPLSEIARKRLRIIFEHTDGFEIAHQDMQLRG 617

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            GE LG +QSGMP    A  E    LLE A   A  +L   P+L 
Sbjct: 618 PGEFLGARQSGMPMLRFADLEQDGELLEAALDSANEMLNNYPELA 662


>gi|300767263|ref|ZP_07077175.1| DNA helicase RecG [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308180477|ref|YP_003924605.1| DNA helicase RecG [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|300495082|gb|EFK30238.1| DNA helicase RecG [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308045968|gb|ADN98511.1| DNA helicase RecG [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 679

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/671 (34%), Positives = 386/671 (57%), Gaps = 30/671 (4%)

Query: 13  LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           ++T  GVG      L+++ IN          DLL Y+P  + D   +  ++EI+++  VT
Sbjct: 9   VATLSGVGPARQKGLAELGINT-------IADLLTYYPFRYEDLQVK-DVNEIADQEKVT 60

Query: 72  ITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           + G ++     + F  +K R  +++L++    ++ ++ F+ +  ++K +   G+ + V G
Sbjct: 61  LKGTVASEPVLARFGRKKNRLNFRLLIDH---DVYMVTFFNQPYLMKQIE-TGQDLAVYG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLP 186
           K    ++ +  +    I  N+ D  F    ++Y     +     +K+I +A     PV+ 
Sbjct: 117 KWDATRSSLTGMK--IINPNNADSAFG---SIYPASKTVKQGTIQKMIKQAYELYAPVIT 171

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + +  +L  K       +  + +H P    D   ++ AR    Y+E L  Q+ + ++++ 
Sbjct: 172 DIVPANLRAKYRLLPRRQMIHDMHFPASQAD---STAARRSATYEEFLLFQMQMQVLKQT 228

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
                GI I  +    +  ++ +PF  T +Q+  + +I  D+     M R+LQGDVGSGK
Sbjct: 229 DATTNGIAIAYDNDRLKAFIKTLPFELTHAQKRVVNEICLDLKSPKHMNRLLQGDVGSGK 288

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA I M AA+ AG QA +M P  ILA+QH   + +   +T + V ++TG    A R+ 
Sbjct: 289 TIVAAIVMYAAITAGYQAALMTPTEILAEQHANNLAQVFADTDVNVALLTGATKPAARKT 348

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            L  +A G+ +++IGTHAL QD + Y  L LVI DEQHRFGV QR    QK   P  L M
Sbjct: 349 LLAALAAGEINLLIGTHALIQDGVTYANLGLVITDEQHRFGVNQRAAFRQKGGQPDALAM 408

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL +T+ G++D+S+I E PAGR+PI+T  +  N+ +  +  +   +  G +AY
Sbjct: 409 TATPIPRTLAITAYGEMDVSEIDELPAGRQPIQTTWVRSNQANSALSFVHQQIDNGSQAY 468

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            + P IEE +  + ++      +L E+F +S  + ++HGRM   +K++VM +FK G  +L
Sbjct: 469 VVTPLIEESETLDVKNAEALSANLQEYFGASVKVGLLHGRMKPEEKDAVMAAFKAGDIQL 528

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG+DV +A+I++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++  
Sbjct: 529 LVSTTVIEVGVDVKNATIMMIYDADRFGLAQLHQLRGRVGRGTKASYCILVADPK-NQQG 587

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ ++  T +GF++A++DL+ R  G++LG+KQSGMP+F +  P    ++L++A++DA 
Sbjct: 588 IERMQIMTQTTNGFVLAQKDLELRGAGDVLGVKQSGMPEFKVGDPIADLTVLQVAQQDA- 646

Query: 665 HILTQDPDLTS 675
           H + Q PD  S
Sbjct: 647 HAIVQQPDWQS 657


>gi|90023357|ref|YP_529184.1| ATP-dependent DNA helicase RecG [Saccharophagus degradans 2-40]
 gi|89952957|gb|ABD82972.1| ATP-dependent DNA helicase RecG [Saccharophagus degradans 2-40]
          Length = 695

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 242/661 (36%), Positives = 362/661 (54%), Gaps = 26/661 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG K +  L+K+            DLLF+ P  ++DR     I ++       
Sbjct: 12  PVTVVKGVGGKLAQTLAKL------GIHTLQDLLFHLPHRYVDRTRITPIGKLRLNMAAV 65

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +   ++ Q  +RR     + D TG + ++ FY  +   K+    G  +   G+ + 
Sbjct: 66  VQGCVVS-ANIQFGRRRSLACTIEDDTGSL-MMRFYHFSAAQKDKLEPGTLVRCYGEPRM 123

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRL----PV 184
               +   HP Y   +      P+ EA   VY L  G++    +K+  +AL  L    P 
Sbjct: 124 GTTGLEFYHPEYDIVDDPSAK-PVEEALTPVYGLTEGITQPRIRKLAEQALLELKHHNPA 182

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIAL 240
             E++  ++ Q     S+A+A   +H P      E       P ++RLA++ELLA  +A 
Sbjct: 183 --EYLPPEVGQMFGVDSLADALRYLHAPPPDAPVEQLIAGLHPYQQRLAFEELLAHYLAR 240

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
              R + + E    + V  +  Q  L  +PF+PT +Q   + DI +D+ +   MLR++QG
Sbjct: 241 QEARARAQAEASPVLRVAEQQRQAFLAQLPFTPTFAQTRVLGDINRDLQEGKPMLRMVQG 300

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA +A    + AG Q  ++AP  ILA+QH+     + +     V  + G + 
Sbjct: 301 DVGSGKTLVAALAALDVISAGYQVALVAPTEILAEQHFIAFSNWLEPLGFNVAWLVGKLT 360

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418
            + RR  +  IA G+  +++GTHALFQD + +  L L IVDEQHRFGV QRL L QK+  
Sbjct: 361 ASKRRDTVASIAAGEVDVVVGTHALFQDDVLFASLGLAIVDEQHRFGVNQRLTLRQKSID 420

Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            T PH L+MTATPIPRTL +T+  ++D S I E P GR P+ TV+I   R  +VIER+  
Sbjct: 421 GTIPHQLVMTATPIPRTLAMTAYAELDYSVIDELPPGRTPVNTVLISQKRRPQVIERILA 480

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
              E K+ YW+C  +E+ +     +  E    L       +I ++HGR+   +KE+VM +
Sbjct: 481 ACKENKQVYWVCTLVEDSETLAAANAEETAELLKNALKDINIGLVHGRLKAAEKEAVMKA 540

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C++LY
Sbjct: 541 FKAGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSIASHCVMLY 600

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
              LS  +  RL V++ T DGF IAE+DL  R  GE+LG +Q+G  ++ +A  +    +L
Sbjct: 601 GDKLSMQAKERLGVMRETNDGFEIAEKDLALRGPGELLGTRQTGEMEYRLADLQRDAGML 660

Query: 657 E 657
           +
Sbjct: 661 D 661


>gi|15607024|ref|NP_214406.1| ATP-dependent DNA helicase RecG [Aquifex aeolicus VF5]
 gi|3914614|sp|O67837|RECG_AQUAE RecName: Full=ATP-dependent DNA helicase recG
 gi|2984279|gb|AAC07804.1| ATP-dependent DNA helicase RecG [Aquifex aeolicus VF5]
          Length = 792

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 254/667 (38%), Positives = 387/667 (58%), Gaps = 33/667 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           D LFY P  + D+     I + ++           +    +  +R   +++  DGTG IT
Sbjct: 121 DALFYFPEKYEDKRLNTSI-KTAKVGEKVALKVKVKEVKIKENERYTLEVVCTDGTGYIT 179

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
           L + Y+        F +G +I V GK+K  K    MVHP     +S+++   +I   Y  
Sbjct: 180 LKYRYKNPHFALKAFRKGMEIVVYGKLKSFKGEKYMVHPEVKSPSSEELG-KIIPVYYVR 238

Query: 163 PTG----LSVDLFKKIIVEALSRLP-----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
             G    +S    +K +  AL+ L        PE++   L++K +FP IA     +HNP 
Sbjct: 239 KRGELQEISSKTKQKRVRTALTALSESLYRYFPEYMPDYLIEKYNFPDIALCIKELHNP- 297

Query: 214 KAKDFE------WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
             KD        +T    +R+ YDEL   Q+ALLL +++ KKE    +NV+ K  +K + 
Sbjct: 298 --KDISVNALNSFTDLYHKRVIYDELFLFQLALLLKKQEIKKEKAPKVNVDEKFLRKAIE 355

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +PF  T++QE AIK+IL+D+S+   M R+LQGDVGSGKT+VA++   A V++G Q  +M
Sbjct: 356 KLPFKLTRAQERAIKEILEDLSRDVPMNRLLQGDVGSGKTIVAILTSLAVVKSGYQVAVM 415

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILA QHY+   +  ++  + V ++TG++  + ++   + +  G  H+++GTHAL Q
Sbjct: 416 VPTEILAHQHYKKFSEMLKDYGVNVALLTGSLTPSQKKSVYKHVKEGNIHVLVGTHALIQ 475

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDI 445
           D +++  L  VI+DEQHRFGV QR  L +K     PH L+M+ATPIPRTL L+  GD+DI
Sbjct: 476 DKVEFKNLGYVIIDEQHRFGVMQRKLLLEKGKGLYPHCLVMSATPIPRTLALSIYGDLDI 535

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I E P GRK + T +   ++ +EV ++++  L +G K Y I P IEE ++ N ++  E
Sbjct: 536 SIIDELPPGRKEVITKLYFESQKEEVYKKVEEELKKGNKVYVIYPLIEESEKLNLKAATE 595

Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +    + F    + ++HG+M D +K +VM+ FK     +L++TTVIEVGIDV +A++++
Sbjct: 596 EYERWKKLFPDRKVLLLHGKMPDKEKLAVMEEFKR-EGDILVSTTVIEVGIDVPEATVMV 654

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLSVLKNTEDGFLI 620
           IE+A  FGL+QLHQLRGRVGR ++ + C+L+  P   KN    S  RL V   T DGF I
Sbjct: 655 IEDAHRFGLSQLHQLRGRVGRSDKEAYCLLVV-PDEIKNEKNESLKRLRVFVKTTDGFKI 713

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQ-PELHD-SLLEIARKDAKHILTQDPDLTSVRG 678
           AEEDLK R  GEI+G+ QSG   F +A      D +LL +ARKDA+ +L  +P+L ++  
Sbjct: 714 AEEDLKLRGPGEIIGVSQSGYFGFRVANLARSQDRALLGVARKDAEELLKNNPNLENL-- 771

Query: 679 QSIRILL 685
           Q ++ LL
Sbjct: 772 QDLKKLL 778


>gi|170732045|ref|YP_001763992.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia MC0-3]
 gi|254246279|ref|ZP_04939600.1| RecG-like helicase [Burkholderia cenocepacia PC184]
 gi|124871055|gb|EAY62771.1| RecG-like helicase [Burkholderia cenocepacia PC184]
 gi|169815287|gb|ACA89870.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia MC0-3]
          Length = 773

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 242/660 (36%), Positives = 366/660 (55%), Gaps = 25/660 (3%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I E+    I    G +  +     + RR   + + D  
Sbjct: 100 TRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFDNE-VAYRPRRQLVVKIQDDD 158

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157
           GE  +L F             G+++ V G ++     + MVHP      + D   P ++ 
Sbjct: 159 GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVLT 217

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            VY    G+S    +K I  A+ R P+   LP  I++D L+    P++ +A  I+H+PR 
Sbjct: 218 PVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIQRDYLKPLDVPTLEQAVRILHHPRV 277

Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIPINVEGKIAQKILR- 267
             D     + + PA  R+ ++ELLA Q++L      ++ +    +P            R 
Sbjct: 278 DSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRTATDTDALTTRL 337

Query: 268 --NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT+VA +A A A++AG QA 
Sbjct: 338 YAALPFTLTGAQARVVDEIAHDLTLAHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAA 397

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTHA+
Sbjct: 398 LMAPTEILAEQHARKLRAWLEPLGVTVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAI 457

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLV 436
            QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL 
Sbjct: 458 IQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTLA 517

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +T   D+++S I E P GR P+ T ++   R +EVI R++     G++ YW+CP IEE +
Sbjct: 518 MTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREAALTGRQVYWVCPLIEESE 577

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
               ++ VE + +L        + ++HGR+S  DK +VM++F     +LL+ATTVIEVG+
Sbjct: 578 TLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMEAFTRNEVQLLVATTVIEVGV 637

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL  ++ T 
Sbjct: 638 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSLTGRERLKTMRETT 697

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           DGF IA  DL+ R  GE LG +QSG      A  E    L++ AR+ A  ++   P++ +
Sbjct: 698 DGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDPAREAAARLIAAYPEVVT 757


>gi|108763623|ref|YP_631603.1| ATP-dependent DNA helicase RecG [Myxococcus xanthus DK 1622]
 gi|108467503|gb|ABF92688.1| ATP-dependent DNA helicase RecG [Myxococcus xanthus DK 1622]
          Length = 669

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/652 (35%), Positives = 363/652 (55%), Gaps = 16/652 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISE-ERIVTITGYISQHSSF--QLQKRRPYKILLNDGTG 99
           D+LF  P  + DR     I+E+   ER VT+   I + + F    Q RR ++ ++ D +G
Sbjct: 3   DILFMLPRCYEDRRQLRTIAELEPGERGVTVG--IVKVADFVPGRQGRRMFRAVVGDRSG 60

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY----IFHNSQDVNFPL 155
            I   +F      LK+ F  G++I ++G+++   +   M HP         ++  V+F  
Sbjct: 61  SIAATYF-NAGPWLKSRFTVGKRIVLSGEVRATMSGREMPHPEIEPAEDIESTTSVHFNR 119

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           I  VY          F+++      +    L + +  DL ++     + +A   IH P  
Sbjct: 120 IVPVYPGFERGEQRSFRELTSRVGEQYAHELDDPLPADLRRRLDLMGLPDALRFIHFPPG 179

Query: 215 AKDFEW----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
             D E      SPA  RLA+DEL   Q+ + L R+  K E+GI  +V      K    +P
Sbjct: 180 DADLEALDAHQSPAHRRLAFDELFFLQLGMALKRQGVKAEVGISFDVSEPRLAKARNALP 239

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T +Q   ++++  DM++   M R++QGDVGSGKT VA+++   A++AG Q  +MAP 
Sbjct: 240 FQLTGAQARVVEELCWDMARPEPMNRLVQGDVGSGKTAVAMVSALIALQAGYQVAVMAPT 299

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA+QH    +K  +     V +++       +R+  E +A G+ H+ +GTHAL Q  +
Sbjct: 300 EILAEQHERNFRKVMEPLGYRVGLVSAAGTAKAKRQVREAVARGEVHLAVGTHALLQADV 359

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            + +L LV++DEQHRFGV QR  L  K   P VL+MTATPIPRTL +T  GD+D+S I +
Sbjct: 360 SFDRLGLVVIDEQHRFGVLQRHTLMSKGPKPDVLVMTATPIPRTLAMTLYGDLDLSVIDQ 419

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P GR PI+T +    +   V E +   L++G +AY + P +EE ++ +          L
Sbjct: 420 LPPGRTPIQTRVFNDKQRALVYESVGAQLAKGHQAYVVYPLVEESEKLDLEDATRGVEKL 479

Query: 511 HEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            + F  + + ++HGRM   +K+SVM+ F+     LL+ TTV+EVG+DV +AS++++E+AE
Sbjct: 480 RKVFPDAKVGLLHGRMKAEEKDSVMEDFREKRLHLLVCTTVVEVGVDVPNASVMVVESAE 539

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            FGL+QLHQLRGRVGRG   S C L+     S  S  RL+V++ + DGF+IAE+DL+ R 
Sbjct: 540 RFGLSQLHQLRGRVGRGAAASFCHLVAGSARSWESAERLTVMEQSSDGFVIAEKDLEIRG 599

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
            GE LG +QSG+P+  +A       LL +A+ +A+ IL +DPD+ +   Q +
Sbjct: 600 PGEFLGTRQSGLPELAVANLARDGDLLSMAQSEARRILEKDPDMKAKENQGL 651


>gi|123966061|ref|YP_001011142.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
           9515]
 gi|123200427|gb|ABM72035.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT
           9515]
          Length = 818

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 241/650 (37%), Positives = 365/650 (56%), Gaps = 25/650 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99
           DL+ Y P +++D   R KI  +  + + T    I + S ++ Q      I+   + D T 
Sbjct: 151 DLINYFPRTYLDYTNRVKIVNLKPDNLYTCIATIKKFSIYKSQNNSNLSIMNIVIFDETS 210

Query: 100 EITLLFF-----YRKTEML---KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151
            I +  F     YR        K+++  G KI ++GK+K  +     + P     N+ D 
Sbjct: 211 SIKVTKFFLGKRYRSYSFYTSQKSLYIPGTKIAISGKVKLSEYGKNFIDPQIEILNNNDE 270

Query: 152 NFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
           +F     I  +YSL    S   F K+I + +      P+ + +  +   S    +++   
Sbjct: 271 SFNFSGKIMPLYSLSESFSNISFIKLIKKVIIYSKDYPDLLTQKQISSLSLLPKSDSLIN 330

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILR 267
           IH P      +    +++RL +DEL   Q+  LL  RK  KK        +  + Q  L 
Sbjct: 331 IHLPPNQ---DALIESKKRLVFDELFLLQMKFLLRKRKNNKKSTNRTFAQKRFLLQDFLN 387

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            IPF  TKSQE  + +I  D+S    M R+LQGDVGSGKT++A++++   +E   Q  +M
Sbjct: 388 KIPFQLTKSQEKVLDEIKLDISDLTPMSRLLQGDVGSGKTIIAIVSLLIILEKDQQGALM 447

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA QHY+ + KY     + VE++TGN PQ  R++ L  + +G   I++GTHALF+
Sbjct: 448 VPTEVLANQHYKNLLKYLNPLSVSVELLTGNTPQKKRKEILINLKNGMVDILVGTHALFE 507

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D + +  L +V++DEQHRFGV QR +L  K    ++L MTATPIPRTL L+  GD+DIS+
Sbjct: 508 DKVIFNSLGMVVIDEQHRFGVTQRNRLLNKGDNTNLLSMTATPIPRTLALSLYGDLDISQ 567

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           ITE P GR PI T II  + +D++   ++  +  GK+AY I P IE+ ++ N  S    F
Sbjct: 568 ITELPPGRVPIITKIITEDDLDKLFSLVENEIDNGKQAYVILPLIEDSEKMNLSSAKNIF 627

Query: 508 NSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             L E     + + ++HG+++  +K  V++SF      +L++TTVIEVGIDV +ASI+II
Sbjct: 628 QYLSEEIFLKNKVGLLHGKLNSDEKNIVINSFLKNEISILVSTTVIEVGIDVPNASIMII 687

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEE 623
            N+E FGL+QLHQLRGRVGRG   S C L+      KN     RL VL+ + DGF IAE+
Sbjct: 688 YNSERFGLSQLHQLRGRVGRGTHKSFCYLITS---DKNGLENKRLKVLEKSNDGFYIAEK 744

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           DL+ R  G++LG KQSG+P F++     +  L+E AR++A++++  DPDL
Sbjct: 745 DLEIRGPGQLLGYKQSGLPDFVLDNLPNNKVLIEKAREEAQNVIKDDPDL 794


>gi|291279604|ref|YP_003496439.1| ATP-dependent DNA recombinase RecG [Deferribacter desulfuricans
           SSM1]
 gi|290754306|dbj|BAI80683.1| ATP-dependent DNA recombinase RecG [Deferribacter desulfuricans
           SSM1]
          Length = 762

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 237/597 (39%), Positives = 347/597 (58%), Gaps = 30/597 (5%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           E +   + GK  K  N   + HP  IF    +VN   I  +YSLP+ ++   + KI+ +A
Sbjct: 181 ENKAYYLFGKKSKFNNLPAITHP--IFLKDYEVN--KIIPIYSLPSKIANKTYYKIVQKA 236

Query: 179 L-----SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLA 229
                 S +  LP +    LL K  +P I +A   IH P   +  E  +    PA +R  
Sbjct: 237 YFNFRDSFIETLPHY----LLMKYGYPEIKQALKQIHFPEDIQAAENLTEKKHPAFQRFV 292

Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
           Y+EL   QI LL  ++  K  +GI   V+    +++   +PF  T SQ+  + +I  DM 
Sbjct: 293 YEELFYLQIGLLANKQILKSTLGIKFEVDLDKLKELKDFLPFELTSSQKRVLAEIFNDMK 352

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-----FIKKY 344
           + N+M R++QGDVGSGKT+VA IA   AV    Q  I+AP  +LA+QHY      F  KY
Sbjct: 353 KINQMNRLIQGDVGSGKTIVAFIAGIVAVFNKYQVAIIAPTEVLAEQHYNNFVNLFGDKY 412

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
           T+       +ITG+ P+  +    E+I+ G+   I GTHAL Q+ + +  L L I+DEQH
Sbjct: 413 TK------ALITGSTPKKEKEILKEKISKGEIDFIFGTHALIQEDVNFNALGLAIIDEQH 466

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           RFGV+QR  L  K   P +LLM+ATPIPRTL LT  GD+DIS I E P GRK + T    
Sbjct: 467 RFGVEQRKLLIDKGYNPDILLMSATPIPRTLALTFYGDLDISIIDEMPPGRKTVITKAYS 526

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-AIIHG 523
             RI EV + +K  LS+G KAY+I P IEE ++ + ++  E +  + ++F   +  ++HG
Sbjct: 527 ETRIYEVFDFVKQELSKGNKAYFIYPLIEESEKLDLKAATESYEKIKKYFGEEVVTLLHG 586

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M   +K+ V+  FK G   +L++TTVIEVGIDV +A++I+IENAE FGL+QLHQLRGRV
Sbjct: 587 KMKSEEKKQVLHDFKYGKKSILVSTTVIEVGIDVTEATVIVIENAERFGLSQLHQLRGRV 646

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GR ++ S CIL+Y   +S++   R++ +     GF I+E DL+ R  G+  G KQSG+P 
Sbjct: 647 GRNDKQSYCILVYSKKISEDGKKRINAMVKYNSGFKISEIDLELRGPGDFFGTKQSGLPD 706

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
              +      ++L+ ARKDA+ IL +DP+LTS + + +R  L   ++ + F +I  G
Sbjct: 707 LKFSNIIRDVAILKKARKDAETILKEDPNLTSPKNRIVRETL-TQKWKKEFDYINIG 762


>gi|330815591|ref|YP_004359296.1| ATP-dependent DNA helicase RecG [Burkholderia gladioli BSR3]
 gi|327367984|gb|AEA59340.1| ATP-dependent DNA helicase RecG [Burkholderia gladioli BSR3]
          Length = 795

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 236/638 (36%), Positives = 360/638 (56%), Gaps = 21/638 (3%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+    +    G +  +     + RR   + L D  
Sbjct: 126 TRSIDLVLHLPMRYEDETTLTPMRELLPGELAQTEGVVYDNE-ITYRPRRQLLVRLRDED 184

Query: 99  G-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
           G E+ L F       +K +   G+++ V G ++     + +VHP     +       ++ 
Sbjct: 185 GSELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPAVRVVDEDTPLAQVLT 243

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            VY    G+S    +K I  AL+R P+   LP  +E   L+    P++A+A   +H+P  
Sbjct: 244 PVYPSTAGVSQAYLRKAIDNALARTPLPELLPAEVEAAYLRPLGVPALADAVRQLHHPGV 303

Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-----NVEGKIAQKI 265
             D     + T PA  R+ +DELLA Q++L    ++ +      +     + +  +  ++
Sbjct: 304 DSDETALIDGTHPAWIRIKFDELLAQQLSLKRAHEERRTRAAPAMPRRAADDQDSLVARL 363

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PFS T +Q   + +I +D++  + M R+LQGDVGSGKT+VA +A A A++AG QA 
Sbjct: 364 FAALPFSLTGAQTRVVDEIARDLTLAHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAA 423

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTHA+
Sbjct: 424 LMAPTEILAEQHARKLRGWLEPLGVTVAWLAGSLKTRDKRSAIEAAALGTAQLVIGTHAI 483

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTATPIPRTLVLTSL 440
            QD++++ +L LVIVDEQHRFGV QRL L  KA  P     H L+M+ATPIPRTL +T  
Sbjct: 484 IQDTVEFARLGLVIVDEQHRFGVAQRLALRAKAGGPAGFQPHQLMMSATPIPRTLAMTYY 543

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D+++S I E P GR PI T ++   R +EVI R++     G++ YW+CP IEE +    
Sbjct: 544 ADLEVSTIDELPPGRTPIVTKLVADARREEVIGRVRDAALGGRQVYWVCPLIEESETLQL 603

Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           ++ VE + +L       ++ ++HGR+S  +K SVM++F     +LL+ATTVIEVG+DV +
Sbjct: 604 QTAVETYETLAAALPGVNVGLVHGRLSPAEKASVMEAFSRNEVQLLVATTVIEVGVDVPN 663

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           AS+++IE+AE FGLAQLHQLRGRVGRG   S+C+L+Y  PLS     RL  ++ T DGF 
Sbjct: 664 ASLMVIEHAERFGLAQLHQLRGRVGRGTAASACVLMYSGPLSIAGRARLKTMRETNDGFE 723

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 724 IARRDLEIRGPGEFLGARQSGAAMLRFADLEQDGWLIE 761


>gi|221202259|ref|ZP_03575293.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD2M]
 gi|221209151|ref|ZP_03582144.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD2]
 gi|221170969|gb|EEE03423.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD2]
 gi|221177833|gb|EEE10246.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD2M]
          Length = 791

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 241/642 (37%), Positives = 357/642 (55%), Gaps = 25/642 (3%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I ++    I    G +  +     + RR   + + D  
Sbjct: 118 TRSIDLVLHLPMRYEDETTLTPIRDLLPGGIAQTEGVVIDNE-VAYRPRRQLVVKIRDDD 176

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIE 157
           GE  +L F             G+++ V G ++     + MVHP      + D   P ++ 
Sbjct: 177 GEQLVLRFLNFYGSQVKQMAVGQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVLT 235

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            VY    G+S    +K I  AL R P+   LP  IE+D L+    P++A+A  I+H+P  
Sbjct: 236 PVYPSTAGVSQAYLRKAIENALERTPLPELLPPEIERDYLKPLGVPTLADAVRILHHPGV 295

Query: 215 AKD----FEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIPINVE---GKIAQKI 265
             D     + + PA  R+ ++ELLA Q++L      ++ +    +P         +  ++
Sbjct: 296 DSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRTARETDALTTRL 355

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF  T +Q   + +I  D++  + M R+LQGDVGSGKT+VA +A A A++AG QA 
Sbjct: 356 YAALPFRLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAA 415

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTHA+
Sbjct: 416 LMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHAI 475

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLV 436
            QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL 
Sbjct: 476 IQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAQGFQPHQLMMSATPIPRTLA 535

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +T   D+D+S I E P GR P+ T ++   R DEVI R++     G++ YW+CP IEE +
Sbjct: 536 MTYYADLDVSTIDELPPGRTPVLTRVVGDARRDEVIARVREAALTGRQVYWVCPLIEESE 595

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
               ++ VE + +L        + ++HGR+S  DK +VMD+F     +LL+ATTVIEVG+
Sbjct: 596 TLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAFTRNEVQLLVATTVIEVGV 655

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL  ++ T 
Sbjct: 656 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYSGPLSIAGRERLKTMRETT 715

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           DGF IA  DL+ R  GE LG +QSG      A  E    L++
Sbjct: 716 DGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLID 757


>gi|78779148|ref|YP_397260.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT
           9312]
 gi|78712647|gb|ABB49824.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
           9312]
          Length = 818

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 240/651 (36%), Positives = 369/651 (56%), Gaps = 25/651 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ---HSSFQLQKRRPYKILLNDGTG 99
           DL+ Y P +++D   R KI  +  + + T    I +   H S +         +++D T 
Sbjct: 151 DLINYFPRTYLDYTNRVKIINLKPDNLYTCIVNIKRFYIHKSTKNSNLSIMNFVVSDETS 210

Query: 100 EITLLFF-----YRKTEML---KNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQ 149
            I +  F     +R        K+++  G K+ ++GK+K  +     V P    +  N+ 
Sbjct: 211 SIKVTKFLLGRRFRSYSFFSSQKSLYTTGTKLAISGKVKLTEYGKTFVDPQIEILKDNND 270

Query: 150 DVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
           + NF   I  +YSL   LS   F K++   L      PE + +  L   S  S  E+   
Sbjct: 271 NFNFSGKILPLYSLAEALSNISFIKLMKSVLIYAKQYPEILNQKQLDSLSLLSKGESLIN 330

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILR 267
           IH P      +    +++RL +DEL   QI  LL ++Q  K  I   +  +  + +  L 
Sbjct: 331 IHLPPTQ---QALIESKKRLVFDELFLLQIKFLLRKRQTNKHVIAKQLPQKKSLLKDFLN 387

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           N PF  TKSQ + + +I +D+S    M R+LQGDVGSGKT++A+ ++   +E   Q   M
Sbjct: 388 NFPFELTKSQVNVLNEIKKDLSNPVPMSRLLQGDVGSGKTIIAIASLLIVIEKNLQGAFM 447

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QHY+ + KY     + VE++TGN PQ  R++ L  + +G   I++GTHALF+
Sbjct: 448 VPTEVLAEQHYKNLLKYLNPLLVSVELLTGNTPQKRRKEILSNLKNGLVDILVGTHALFE 507

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D + +  L +V++DEQHRFGV QR +L  K    ++L MTATPIPRTL L+  GD+D+S+
Sbjct: 508 DKVIFNSLAMVVIDEQHRFGVTQRNRLLNKGENTNLLSMTATPIPRTLALSIYGDLDVSQ 567

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           ITE P GR PI T II  + +  + + ++  +++G++AY I P IE+ ++ N  S  + F
Sbjct: 568 ITELPPGRVPITTKIISEDDLTNLFKIVEDEINKGRQAYVILPLIEDSEKMNLSSARKTF 627

Query: 508 NSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             L E   F + + ++HG+++  +K  V++SF      +L++TTVIEVGIDV +A+I+II
Sbjct: 628 KHLSEEVFFNNRVGLLHGKLNSQEKNEVINSFLKNEINILVSTTVIEVGIDVPNATIMII 687

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEE 623
            N+E FGL+QLHQLRGRVGRG   S C L+      KN     RL VL+ + DGF IAE+
Sbjct: 688 YNSERFGLSQLHQLRGRVGRGSTKSFCYLVTS---DKNGLENKRLCVLQKSNDGFYIAEK 744

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           DL+ R  G+ILG KQSG+P F++     +  L+E AR++A  +++ DPDL 
Sbjct: 745 DLELRGPGQILGYKQSGLPDFVLDNLPNNKFLIEKAREEAIKVVSNDPDLN 795


>gi|325688114|gb|EGD30133.1| DNA helicase RecG [Streptococcus sanguinis SK72]
          Length = 671

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 244/671 (36%), Positives = 383/671 (57%), Gaps = 30/671 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+       ET   DLL Y P  + D   +  + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L      G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLAEKIEVGVNIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184
             K K  +  +    +    +D     ++ VY L  G+S    V L K    + L  L  
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL++    S  EA   +H P+   D++    A  R+ ++EL   Q+ L +++
Sbjct: 167 LEENLPQPLLERYQLVSRVEAVRAMHFPKDLTDYK---QALRRVKFEELFYFQMQLQVLK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ K    G+ I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVG
Sbjct: 224 RESKAVSNGLKIDWQSDAVAEKKQSLPFELTSAQERSLAEILQDLRSPGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A 
Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  I  GQ  +I+GTHAL Q+ ++YY L LVI+DEQHRFGV+QR  L +K   P V
Sbjct: 342 RRETLSAIEKGQVDMIVGTHALIQEGVRYYALGLVIIDEQHRFGVEQRRILREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   ++  V++ LK  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLGVVLDWLKKELHKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G 
Sbjct: 462 QAYFISPLIEESEALDLKNAIALEGELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGR 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGNKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++   R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPD 672
            A  I T DP+
Sbjct: 641 VASQI-TADPN 650


>gi|126696154|ref|YP_001091040.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
           9301]
 gi|126543197|gb|ABO17439.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT
           9301]
          Length = 818

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 240/652 (36%), Positives = 368/652 (56%), Gaps = 29/652 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ---HSSFQLQKRRPYKILLNDGTG 99
           DL+ Y P +++D   R KI  +  + + T    + +   H S +        I++ D T 
Sbjct: 151 DLINYFPRTYLDYTNRVKIINLKPDNLYTCIANVKRFYIHKSKKNSNLSIMNIVVYDETS 210

Query: 100 EITLLFFYRKTEMLKNVFFE--------GRKITVTGKIKKLKNRIIMVHPHY--IFHNSQ 149
            I +  F+         FF         G K+ ++GK+K  +     V P    +  N+ 
Sbjct: 211 SIKVTKFFLGRRFRSYSFFTSQKSLYTAGTKLAISGKVKLTEYGKTFVDPQIEILKDNND 270

Query: 150 DVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
           + NF   I  +YSL   LS   F K++ + L      PE + K  L   S  S  E+   
Sbjct: 271 NYNFSGKILPLYSLGEALSNMSFIKLMKKVLIYAKQYPEILNKKQLDSLSLLSKGESLIN 330

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG---IPINVEGKIAQKI 265
           IH P      +    +++RL +DEL   QI  LL +++  K +    +P   +  + ++ 
Sbjct: 331 IHFPPTQ---QALIESKKRLVFDELFLLQIKFLLRKRKTNKNVTSQQLP--QKKSLLKEF 385

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L N PF  TKSQE+ + +I +D+S    M R+LQGDVGSGKT++A+ ++   +E   Q  
Sbjct: 386 LNNFPFELTKSQENVLNEIKKDLSNPVPMSRLLQGDVGSGKTIIAIASLLLVIEKNLQGA 445

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
            M P  +LA+QHY+ + KY     + VE++TGN PQ  R++    + +G   I++GTHAL
Sbjct: 446 FMVPTEVLAEQHYKNLLKYLNPLLVSVELLTGNTPQKKRKEIFSNLNNGLVDILVGTHAL 505

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           F+D + +  L +V++DEQHRFGV QR +L  K    ++L MTATPIPRTL L+  GD+D+
Sbjct: 506 FEDKVIFNALGMVVIDEQHRFGVTQRNRLLNKGDNTNLLSMTATPIPRTLALSIYGDLDV 565

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S+ITE P GR PI T II  + +  + + ++  +++GK+AY I P IE+ ++ N  S  +
Sbjct: 566 SQITELPPGRVPITTKIISEDNLTNLFKIVEDEINKGKQAYVILPLIEDSEKMNLSSAKK 625

Query: 506 RFNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            F  L E   F   + ++HG++S  +K  V++SF      +L++TTVIEVGIDV +A+I+
Sbjct: 626 TFKYLSEEVFFNKKVGLLHGKLSSQEKNEVINSFLKNEINILVSTTVIEVGIDVPNATIM 685

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIA 621
           II N++ FGL+QLHQLRGRVGRG   S C L+      KN     RL VL+ + DGF IA
Sbjct: 686 IIYNSDRFGLSQLHQLRGRVGRGSTKSFCYLVTS---DKNGLENKRLCVLQKSNDGFYIA 742

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           E+DL+ R  G+ILG +QSG+P F++     +  L++ AR++A  I++ DPDL
Sbjct: 743 EKDLELRGPGQILGYRQSGLPDFVLDNLPNNKFLIDKAREEAIKIVSGDPDL 794


>gi|332365660|gb|EGJ43418.1| DNA helicase RecG [Streptococcus sanguinis SK1059]
          Length = 671

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 242/671 (36%), Positives = 386/671 (57%), Gaps = 30/671 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+       ET   DLL Y P  + D   +  + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFTKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184
             K K  +  +    +    +D     ++ VY L  G+S    V L K    + L  L  
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQANLVKLIKTAFDQGLDLL-- 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL++    S  EA   +H P+   D++    A  R+ ++EL   Q+ L +++
Sbjct: 167 LEENLPQSLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ K    G+ I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVG
Sbjct: 224 RETKAVSNGLKIDWQSDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A 
Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  I +GQ  +I+GTHAL Q++++Y+ L LVI+DEQHRFGV+QR  L +K   P V
Sbjct: 342 RRETLAAIENGQVDMIVGTHALIQEAVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ LK  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G 
Sbjct: 462 QVYFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGR 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++   R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPD 672
            A  I T DP+
Sbjct: 641 VASQI-TADPN 650


>gi|325268106|ref|ZP_08134752.1| DNA helicase RecG [Kingella denitrificans ATCC 33394]
 gi|324980491|gb|EGC16157.1| DNA helicase RecG [Kingella denitrificans ATCC 33394]
          Length = 681

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 231/645 (35%), Positives = 362/645 (56%), Gaps = 20/645 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL  + P  + D      IS      +  + G +  H   Q + R+     +    G I 
Sbjct: 29  DLALHLPLRYEDETKIVPISAAPLGEVCQVEGEVL-HQEVQFKPRKQLVAQIKGDDGAIL 87

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
            L F       +     G+++   G+IK+   R  M+HP       Q +   L   +Y  
Sbjct: 88  NLRFIHFYPSHQKQLAPGQRVRALGEIKRGYERCEMIHPKIKSPEKQALATSLT-PIYPT 146

Query: 163 PTGLSVDLFKKIIVEALSRL---PVLPEWIEKDLLQKKSFPSIAEAFNIIHNP----RKA 215
             GL+  + +K +  AL+++    +LP  +  DL      P++AE+   +H P       
Sbjct: 147 TNGLTQPVLRKAVQAALAQVDMHEILPARVLDDL----RLPTLAESLRTLHYPPPHLSAG 202

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
           +    T P  +RL +DELLA Q+++ L R++ +    +P++ + ++ + +L N+PF  T 
Sbjct: 203 QLGSGTLPEWQRLKFDELLAQQLSMRLARQRRQHGQAMPLSGDERLCRALLGNLPFRLTA 262

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAPIGIL 333
           +QE    +I  D++Q   M R+LQGDVGSGKT+VA ++   A+E+    Q  IMAP  IL
Sbjct: 263 AQERVCSEIRADLAQSTPMHRLLQGDVGSGKTIVAALSALTALESAQEVQVAIMAPTEIL 322

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH+   +++ +   + V  ++G++ +  + +A   +A G+  + +GTHALFQD + + 
Sbjct: 323 AEQHFMKFRQWLEPLGLTVAWLSGSLKKKEKEQAKAALADGRIRVAVGTHALFQDDVAFR 382

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++   D+D+S I E P 
Sbjct: 383 QLGLVIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSFYADLDVSSIDELPP 442

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R PIKT+++   R  +V   +     +G++ YW+CP IEE +    ++  +    L   
Sbjct: 443 NRTPIKTLLVNQVRRHDVEGFVLNTCQKGQQVYWVCPLIEESEVLQLQTATDTLARLQAA 502

Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               S+ ++HGRM   +K +VM  F  G   +L+ATTVIEVG+DV +AS+++IE+AE  G
Sbjct: 503 LPGLSVGLVHGRMKAAEKAAVMAEFIAGRLHVLVATTVIEVGVDVPNASLMVIEHAERMG 562

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LAQLHQLRGRVGRG   SSC+L++  PLS  +  RL V++   DGF IA++DL+ R  GE
Sbjct: 563 LAQLHQLRGRVGRGAAASSCVLMFAEPLSALARARLKVVREHTDGFEIAKQDLEIRGPGE 622

Query: 633 ILGIKQSGMP--KFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            LG +QSG+P  +F   Q +LH  LLE AR+ A  ++  +P++ +
Sbjct: 623 FLGARQSGVPMLRFADLQTDLH--LLEAARRVAADLMADEPEIVA 665


>gi|332972878|gb|EGK10821.1| DNA helicase RecG [Kingella kingae ATCC 23330]
          Length = 680

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/603 (37%), Positives = 345/603 (57%), Gaps = 8/603 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H   Q + R+   + + D +G +  L F       +    +G+ +   G+IK+      M
Sbjct: 64  HQEVQFKPRKQLIVQIQDESGSVLNLRFIHFYPNHQKQLAQGQTVRALGEIKRGYYGDEM 123

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP        D+   L+  +Y    GL+    +K++  AL  +  L E +  + L+K  
Sbjct: 124 IHPKIKSPEKSDLA-QLLTPIYPTTNGLNQPTLRKVVQTALETVD-LSEILPDNYLKKYQ 181

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
              +A++   +HNP         +    P   RL +DELLA Q+++ L R++ +      
Sbjct: 182 LIPLAQSLRTLHNPPPDWSLSMLTNGALPEWRRLKFDELLAQQLSMRLARQRRRAGNARA 241

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +   GK+++K+L  +PF  T++Q+    +I +D+++   M R+LQGDVGSGKT+VA ++ 
Sbjct: 242 LVSTGKLSEKLLSYLPFDLTRAQKKVCAEIREDLAKPVPMHRLLQGDVGSGKTIVAALSA 301

Query: 315 AAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
             A+E+ G Q  IMAP  ILA+QH+   K++ +   I V  ++G++ +  + +A   +A 
Sbjct: 302 LMALESDGVQVAIMAPTEILAEQHFIKFKQWFEPLGISVAWLSGSLKKKEKDQAKAALAD 361

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G+  + +GTHALFQD + ++ L LVIVDEQHRFGV QRL L  K +  H L+M+ATPIPR
Sbjct: 362 GRIRVAVGTHALFQDDVLFHDLALVIVDEQHRFGVAQRLALKNKGSDVHQLMMSATPIPR 421

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL ++   D+D+S I E P  R PIKT ++   R  EV   +     +G++AYW+CP IE
Sbjct: 422 TLAMSFFADLDVSSIDELPPNRTPIKTKLVNNLRRSEVEGFVLNTCQKGQQAYWVCPLIE 481

Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E +    ++V +    L        I ++HGRM   +K +VM  F +G+  +L+ATTVIE
Sbjct: 482 ESEVLQLQTVTDTLAELQAALPQLKIGLVHGRMKAAEKAAVMAEFISGSLNVLVATTVIE 541

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV +AS+++IE+AE  GLAQLHQLRGRVGRG   S+C+LL+  PL + S  RL V+ 
Sbjct: 542 VGVDVPNASLMVIEHAERMGLAQLHQLRGRVGRGAAASTCVLLFAEPLGQISKARLKVIY 601

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
              DGF IA +DL+ R  GE LG +QSG P    A  +    LLE AR+ A  ++   PD
Sbjct: 602 ENTDGFEIARQDLEIRGPGEFLGARQSGAPMLRFADLQEDLPLLEAAREVAADLVAHRPD 661

Query: 673 LTS 675
           + +
Sbjct: 662 VVA 664


>gi|324990137|gb|EGC22075.1| DNA helicase RecG [Streptococcus sanguinis SK353]
          Length = 671

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 242/671 (36%), Positives = 386/671 (57%), Gaps = 30/671 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+       ET   DLL Y P  + D   +  + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184
             K K  +  +    +    +D     ++ VY L  G+S    V L K    + L  L  
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL++    S  EA   +H P+   D++    A  R+ ++EL   Q+ L +++
Sbjct: 167 LEENLPQPLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ K    G+ I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVG
Sbjct: 224 RETKAVSNGLKIDWQSDAVAEKKKSLPFELTPAQERSLTEILQDLQSSGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A 
Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  I +GQ  +I+GTHAL Q++++Y+ L LVI+DEQHRFGV+QR  L +K   P V
Sbjct: 342 RRETLAAIENGQVDMIVGTHALIQEAVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ LK  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G 
Sbjct: 462 QVYFISPLIEESEALDLKNAIALEEELTAYFGRQTQVALLHGKMKSEEKEAIMQDFKEGR 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGNKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++   R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPD 672
            A  I T DP+
Sbjct: 641 VASQI-TADPN 650


>gi|167759036|ref|ZP_02431163.1| hypothetical protein CLOSCI_01383 [Clostridium scindens ATCC 35704]
 gi|167663443|gb|EDS07573.1| hypothetical protein CLOSCI_01383 [Clostridium scindens ATCC 35704]
          Length = 676

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 239/667 (35%), Positives = 370/667 (55%), Gaps = 24/667 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERIVT 71
           +   +G+G+K      K+        +   DL+ Y+P  + D +  P  ISE+ E ++ T
Sbjct: 7   IKELKGIGEKTQKLFEKV------GVSTVGDLIRYYPRGY-DVYEDPVPISEVEEGKVQT 59

Query: 72  ITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           + G I      Q+   R  ++    + D TG I  ++F  +   L+N    G KI + G+
Sbjct: 60  VAGAI--FGRVQVSGNRNMQVTTIHVKDLTGTIKAVWF--RMPFLRNTLAGGGKIILRGR 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           +   K  + M HP   +   + +     ++ VY L  GLS ++  K + +ALS+L +  E
Sbjct: 116 VTSRKGGLAMEHPEIFYPAGKYEEKIHTLQPVYGLTAGLSNNVVAKAMHQALSQLDLTRE 175

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +  +L  K        A   IH P   +D E    ARERL ++E L   +++  M+ + 
Sbjct: 176 TLPDELRLKYGLAEYNYAIRGIHFP---EDKEVFYHARERLVFEEFLEFILSIRKMKDKN 232

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++     I        +++  +P+  TK+Q+    +I  DM+    M R++QGDVGSGKT
Sbjct: 233 ERIENEYIVQRKPEVDELIGRLPYELTKAQKKVWDEIAHDMASDTAMSRLVQGDVGSGKT 292

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRR 365
           +VA++A+ +    G Q  +MAP  +LA+QHY+ I +  +    +I VE++TG+M    +R
Sbjct: 293 IVAVLALISVALNGYQGAMMAPTEVLARQHYDSITRLLEEYGIKIKVELLTGSMTAKEKR 352

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           +A +RI  G A IIIGTHAL QD + Y  L LV+ DEQHRFGV+QR    +K   PHVL+
Sbjct: 353 RAYDRIECGYARIIIGTHALIQDRVYYDCLALVVTDEQHRFGVKQREAFARKGGMPHVLV 412

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPRTL +   GD+DIS I E PA R PIK  ++           +K  + EG++ 
Sbjct: 413 MSATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVETGYRKTAYAFMKKQVGEGRQC 472

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP +EE ++    +V++    L E     I +  +HGRM   +K+ +M+ F     +
Sbjct: 473 YVICPMVEESEQLEVENVLDYAAMLQEEMGKGIVVSCLHGRMRQAEKDDIMERFGRCEIQ 532

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVGIDV +A++++IENAE FGLAQLHQLRGRVGRG+  S CI +     +K 
Sbjct: 533 ILVSTTVIEVGIDVPNATVMMIENAERFGLAQLHQLRGRVGRGKHQSYCIFMSGSK-AKE 591

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL++L  + DGF IA EDL+ R  G++ GI+QSGM  F +        +L++A + A
Sbjct: 592 TRERLNILNESNDGFKIASEDLRLRGPGDLFGIRQSGMMDFKLGDVFQDAKVLQMANEAA 651

Query: 664 KHILTQD 670
             +L  +
Sbjct: 652 DLLLNDE 658


>gi|261379837|ref|ZP_05984410.1| ATP-dependent DNA helicase RecG [Neisseria subflava NJ9703]
 gi|284797526|gb|EFC52873.1| ATP-dependent DNA helicase RecG [Neisseria subflava NJ9703]
          Length = 729

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/600 (38%), Positives = 343/600 (57%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK   +   M
Sbjct: 114 HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEM 173

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP      S  +   L   +Y    GL+    ++II  AL   P L + +   LL +  
Sbjct: 174 IHPKIRDAESSGLAESLT-PIYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLSRLK 231

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +      S    PA +RL +DELLA Q+++ L R++        
Sbjct: 232 LPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGSATA 291

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q +   +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 292 LGGDGILTQALRHALPFALTDAQERVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSA 351

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   + V  ++G+  +  + +A  ++A G
Sbjct: 352 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADG 411

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D +++  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 412 TVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKSKGRDVHQLMMSATPIPRT 471

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE
Sbjct: 472 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNIRRAEVEGFVLNICRKGQQAYWVCPLIEE 531

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEV
Sbjct: 532 SETLQLQTATETLAQLQAALPELNIGLVHGRMKAAEKAEVMAQFAAGHLNVLVATTVIEV 591

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+  
Sbjct: 592 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYE 651

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A  E    LLE AR+ A  ++ Q+P++
Sbjct: 652 HTDGFEIAHQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPMLIEQNPEI 711


>gi|299144503|ref|ZP_07037582.1| ATP-dependent DNA helicase RecG [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298517591|gb|EFI41331.1| ATP-dependent DNA helicase RecG [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 680

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 238/645 (36%), Positives = 371/645 (57%), Gaps = 15/645 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISE-ISEERIVTITGYISQHSSFQLQKRRPYKILL-NDGTGE 100
           DLL Y P  + D+    K+ E I +E+      ++S   + +++K       L  D +G+
Sbjct: 31  DLLTYFPRDYDDQSNFKKLYEAIIDEKATFRVKFLSVLENRKIRKNLFITTFLAEDSSGQ 90

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-FPLIEAV 159
             + FF  K   +KN      +  V+GK+ + K ++ + +P   F  + D N    I  +
Sbjct: 91  AKISFFNMK--FIKNQISLNDEYLVSGKVNRFKGQVQITNP--TFEKASDANRVGTIYPI 146

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           Y L  G+  +    ++ +A+  + +  E + + L++K +     EA   IH P   K F 
Sbjct: 147 YPLKKGVFNNEIVNLVHQAVE-MNLFEENLPQYLVKKYNLMDKNEAIKNIHMPYDKKSF- 204

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
               AR+RL ++ELL  Q+++ +++ Q +    IP  ++ +I  K + N+PF  T  Q+ 
Sbjct: 205 --IRARQRLVFEELLIFQLSIFMLKNQDEIVKVIPYKIDDRIY-KFIDNLPFLLTDGQKR 261

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            + +I +DM   NRM R+LQGDVGSGKT++A+I+M  A   G Q+ IMAP  ILA+QH E
Sbjct: 262 VVDEIFEDMKSGNRMNRLLQGDVGSGKTIIAIISMYLAYLNGYQSTIMAPTEILAKQHLE 321

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +   +   + VE++ G+  + +R + L  I +G+  I+IGTHAL +D++++  L L I
Sbjct: 322 SFRNILEPLGVKVELLVGSTTKKNRDRILTGIYNGEIDILIGTHALIEDTVEFKNLGLNI 381

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            DEQHRFGV+QR  L  K    H L+MTATPIPRTL L   GD+ IS I   P  RK I 
Sbjct: 382 TDEQHRFGVRQRQTLNTKEKTAHTLVMTATPIPRTLALILYGDLSISTIDTLPPNRKKID 441

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI- 518
           T+ I  + ++  +  ++  + +G++AY ICP IEE +  +  S  E FN L +++ S I 
Sbjct: 442 TIAINESMLNRGLSFIREQVKKGRQAYIICPLIEESENFDLDSATEVFNDLRKNYFSDIR 501

Query: 519 -AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            A++HG+MS  +K SVM  FK+G   ++++TTVIEVG++V +A++I+I NAE FGLAQLH
Sbjct: 502 VALLHGKMSSDEKNSVMQDFKDGCTDIIVSTTVIEVGVNVPNATVILIYNAERFGLAQLH 561

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGR    S CI LY+   SK S+ R+ V+  + DGF IA +DL  R  G+I G +
Sbjct: 562 QLRGRVGRSVHKSYCI-LYNSSNSKVSWQRMKVMTESTDGFYIANKDLSIRGSGDIFGTR 620

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           QSG+ +  +A       +L+ A  +A+ IL  D  L   +  ++R
Sbjct: 621 QSGIMELKLADLVRDTEILKYATIEAREILKDDRKLIENKNSNLR 665


>gi|311029989|ref|ZP_07708079.1| ATP-dependent DNA helicase RecG [Bacillus sp. m3-13]
          Length = 682

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 236/635 (37%), Positives = 362/635 (57%), Gaps = 19/635 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL + P  + D   R  ISE+  E  +T+ G +    S     ++  ++      G   
Sbjct: 33  DLLMHFPYRYEDYRLR-DISEVKHEEKITVEGKVHGEPSLMYFGKKKSRLTFRFYVGRFL 91

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYS 161
           +          KN       IT+TGK  + +  I ++  H+  F    +V     E VYS
Sbjct: 92  VKAVCFNRPYYKNKLSINDTITITGKWDQHRQTITVMEIHFGPFMKESEV-----EPVYS 146

Query: 162 LPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
           +   ++V   +K I  AL      L   +   +LQK   PS  ++   +HNP      E 
Sbjct: 147 VKGNITVKQMRKFIGNALQTYGSALESALPVSILQKYKLPSKGDSVRALHNPVNQ---ET 203

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQE 278
              AR    Y+E L  Q+ +  +RK +K+E   G+         ++ +  +PF  T +Q 
Sbjct: 204 LKHARRYFVYEEFLLFQLKIQALRK-YKREQTEGLVHEFPKSKLERFIATLPFPLTGAQN 262

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + +IL DM+   RM R+LQGDVGSGKT+VA I++  A  +G Q  +M P  ILA+QH 
Sbjct: 263 RVLGEILGDMTSPYRMNRLLQGDVGSGKTVVAAISLYGAHLSGYQGALMVPTEILAEQHA 322

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             +      T++ +E++T ++    RR+ LER+A+G+  I++GTHAL Q  + +  L LV
Sbjct: 323 HSLTSLFSGTEVNIELLTSSVKGKRRRELLERLANGKIDILVGTHALIQGEVNFKSLGLV 382

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I DEQHRFGV+QR  L +K + P VL MTATPIPRTL +T+ G++D+S I E PAGRK I
Sbjct: 383 ITDEQHRFGVEQRRVLREKGSNPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKAI 442

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-- 516
           +T       ID V+  ++  L +G++AY ICP IEE ++ + ++ ++  + L  ++    
Sbjct: 443 ETYWAKHQMIDRVLGFVEKELQKGRQAYVICPLIEESEKLDVQNAIDVHDMLTHYYRGKW 502

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I ++HGR+S  +KE VM++F     +LL++TTV+EVG++V +A++++I +AE FGL+QL
Sbjct: 503 KIGLMHGRLSSDEKEKVMEAFSENEVQLLVSTTVVEVGVNVPNATMMVIYDAERFGLSQL 562

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG E S CILL  P  S+    R+ ++  T DGF+++E+DL+ R  G+  G 
Sbjct: 563 HQLRGRVGRGSEQSYCILLADPK-SEVGKERMKIMTETNDGFVLSEKDLELRGPGDFFGR 621

Query: 637 KQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670
           KQSG+P+F +A   +HD   LE+AR+DA  +L  D
Sbjct: 622 KQSGVPEFKVADM-VHDYRALEVARQDAHDLLYSD 655


>gi|116074689|ref|ZP_01471950.1| putative DNA helicase [Synechococcus sp. RS9916]
 gi|116067911|gb|EAU73664.1| putative DNA helicase [Synechococcus sp. RS9916]
          Length = 844

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 238/690 (34%), Positives = 377/690 (54%), Gaps = 35/690 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L APLS  +G+G K +  L+      +       DLL Y+P  ++D     +I  +    
Sbjct: 145 LDAPLSRVKGIGPKLAERLA------SLGLLLVRDLLLYYPRDYVDYSAMRRIEALEPGT 198

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFE------ 119
             TI   + +   F   +     IL   + D TG + +  F                   
Sbjct: 199 TATIVATVRRCHGFTSPRNPNLSILELQVQDPTGRLKVTRFLAGKRFSSPAALHTQTRQY 258

Query: 120 --GRKITVTGKIKKLKNRIIMVHP--HYIFHNSQDVNFPLIE---AVYSLPTGLSVDLFK 172
             G  + ++G +K     +    P    +   S  V  P I     VY+L  GL+ D  +
Sbjct: 259 PVGATVAISGLVKSGPYGLSFQDPLIEVLESASAPVRSPQIGRLLPVYALTEGLAADRLR 318

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           K++   L      PE +  D        S   A + IH P   K+ +    AR RL +DE
Sbjct: 319 KLVALVLPAAQHWPEPLSADRRDALELMSRPLALDQIHRP---KNRDALQRARRRLVFDE 375

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGK---IAQKILRNIPFSPTKSQESAIKDILQDMS 289
            L  Q+ L+  R   ++     +   G+   +  + L  +PF  T +Q+  + +I  D++
Sbjct: 376 FLLLQLGLMQRRAAHRQRQAPCLEGVGQRDGLVGRFLSLLPFDLTAAQQRVLAEIEVDLA 435

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           +   M R++QGDVGSGKT+VA+ A+  AV+AG Q  +MAP  +LA+QHY  + ++     
Sbjct: 436 KAEPMARLVQGDVGSGKTVVAVAALLNAVDAGWQGALMAPTEVLAEQHYRSLCQWLTPLH 495

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           I VE++TG+  + +RR+ L  +A+G   I++GTHAL +D + + +L LV+VDEQHRFGV+
Sbjct: 496 ISVELLTGSTSRPNRRRMLTDLANGTLRILVGTHALIEDPVDFSRLGLVVVDEQHRFGVR 555

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI+T  I  +  D
Sbjct: 556 QRNRLLSKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIQTRQISGSDRD 615

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSD 527
           +  + ++  +  G++AY + P +EE ++ + RS V+    L E      S+ ++HGR++ 
Sbjct: 616 QAYDLIREQVQAGQRAYVVLPLVEESEKMDLRSAVDVHRQLVEEVFPDCSVGLLHGRLNS 675

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K++V+ +F  G C++L++TTV+EVG+DV +AS+++I++A+ FGLAQLHQLRGRVGRG 
Sbjct: 676 AEKQAVIQAFARGDCQVLVSTTVVEVGVDVPEASVMVIDHADRFGLAQLHQLRGRVGRGA 735

Query: 588 EISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
             S C+L+     PL++    RL VL  + DGF IAE DL+ R  G++LG +QSG+P   
Sbjct: 736 AASHCLLVNDSRNPLARQ---RLDVLVRSTDGFEIAEMDLRLRGPGQVLGTRQSGLPDLA 792

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           +A      ++L+ AR++A  ++ +DP L  
Sbjct: 793 LASLADDGAVLDDAREEASRLIQEDPGLNG 822


>gi|298368995|ref|ZP_06980313.1| ATP-dependent DNA helicase RecG [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282998|gb|EFI24485.1| ATP-dependent DNA helicase RecG [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 680

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 230/600 (38%), Positives = 343/600 (57%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + D +G +  L F       +     G++I   G+IK   +   M
Sbjct: 65  HQEVTFKPRKQLIVQIADDSGSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP      S  +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAESSGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLDRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +      S    PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIRQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q +   +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LGGDGTMTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G QA +MAP  ILA+QH+   K++ +   + V  ++G+  +  + +A  ++A G
Sbjct: 303 LTAIESGAQAAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D +++  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 TVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRVEVEGFVLNICRKGQQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEV
Sbjct: 483 SETLQLQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A  E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPMLIEQNPEI 662


>gi|146296794|ref|YP_001180565.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410370|gb|ABP67374.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 679

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 241/633 (38%), Positives = 369/633 (58%), Gaps = 19/633 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101
           DLL++ P  ++D     KI E+S+  I +  G +  + +  + +  +  KI + DGTG +
Sbjct: 32  DLLWHIPRKYLDYSKLKKIKELSDGEIESFVGTVCGKPTEIETKSVKIIKIPVEDGTGVV 91

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
           T ++F +  + +K+V  EG     +GKI++    I + +P +  ++   ++   I  VY+
Sbjct: 92  TTVWFNQ--DYIKSVLKEGEVFCFSGKIERRGFYIEVKNPEFEKYDQNLLHTGRIVPVYN 149

Query: 162 LPTGLSVDLFKKIIVEALSRLP-----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
              GLS  + + I+   L ++      V+P +I     QK     I  A   IH P    
Sbjct: 150 STEGLSQKVMRNIVNNLLEQVEGQLGDVIPPYIR----QKYHLSEINFAMRNIHFPDNML 205

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
                S AR RL ++E    Q++LLL+++  +K  G+ +    +  ++  R +PF  T +
Sbjct: 206 SL---SLARRRLVFEEFYLLQLSLLLLKENIEKNEGVKVQNAKENIEEFKRLLPFELTNA 262

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+  + +I  D+    +M R++QGDVG GKT+VAL A  A ++ G Q  +MAP  +LA Q
Sbjct: 263 QKRVLDEIADDLESSKQMNRLIQGDVGCGKTVVALAAAYATIKGGYQVALMAPTEVLAIQ 322

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY   KKY +N  I V ++ G+ P+  +   L+ I +G  H++IGTHAL Q+ +++  L 
Sbjct: 323 HYNESKKYFKNG-INVRLLIGSTPKKEKEVILKEIEYGLCHMVIGTHALIQEDVKFKNLG 381

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L I DEQHRFGV QR++LT+K  +P++L+MTATPIPRTL L   GD+DIS I E P GRK
Sbjct: 382 LAITDEQHRFGVIQRVELTKKGNSPNILVMTATPIPRTLSLVLYGDLDISIIDEMPPGRK 441

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514
            I T  +  +    V   +K  L EG++ YWICP IEE +  N +S VE   SL E F  
Sbjct: 442 KILTYAVDESFRQRVYNFIKKQLDEGRQVYWICPLIEESETLNAKSAVEFAKSLKEGFFK 501

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             +I  +HG++S  +++ V+  FK G   +L++TTV+EVGI+V +A++++IENAE FGLA
Sbjct: 502 DYNIGCLHGKLSSKERDKVLQEFKEGLIHILVSTTVVEVGINVPNATVMVIENAERFGLA 561

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRGE  S CI L++   S+ S  R+  +  +++GF IAE DLK R  G++ 
Sbjct: 562 QLHQLRGRVGRGEHQSYCI-LFNQSDSEISKKRMVAITKSQNGFEIAEMDLKLRGPGDLF 620

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           G KQ G+  F IA       +L+ ARK A+  +
Sbjct: 621 GTKQHGLMNFKIADIVSDMEILKEARKAAEETI 653


>gi|39996428|ref|NP_952379.1| ATP-dependent DNA helicase RecG [Geobacter sulfurreducens PCA]
 gi|39983308|gb|AAR34702.1| ATP-dependent DNA helicase RecG [Geobacter sulfurreducens PCA]
          Length = 714

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 240/698 (34%), Positives = 384/698 (55%), Gaps = 36/698 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           L  P+   +GVG K +  L++  I+   +A        L+  P+ + DR     ++ +  
Sbjct: 12  LETPMQFIKGVGPKMAEILARKGIVTVEDA--------LYLLPNRYEDRRQVVPMNRLRP 63

Query: 67  ERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
                  G +        +  RR ++++  D +G ++  +F      ++  +  GR+   
Sbjct: 64  GETCVFAGEVVSADVVTTKGGRRFFEVMARDASGVMSFKWFNYHAAFMRKAWQPGRRGIF 123

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD----------VNFPLIEAVYSLPTGLSVDLFKKII 175
           TG++ +   +  + HP   +    +          V F  +  VY L  GL+    +K++
Sbjct: 124 TGQVTQYGLQREVHHPDVDWLAEGETVEAAMARDPVGFGRLVPVYPLTEGLNQKALRKVM 183

Query: 176 VEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAY 230
            E + R  P +   +   ++++++   +AEA   +H P    D     E   PA   L +
Sbjct: 184 KEVVDRFAPCVESALPARVIRERALLPLAEALGAVHFPAADADPRALEEGRDPAHRTLVF 243

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           DE    ++ L L R+    E GI  +V     + +L+ +PF+ T++Q   + +I  DM  
Sbjct: 244 DEFFFLELGLALKRRGVTLEPGIAFSVNHTYTKPLLKLLPFALTEAQRRVLAEIKADMMA 303

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            + M R++QGDVG GKTLVAL+A   AVE G Q  IMAP  ILA+QHY  I ++ +   +
Sbjct: 304 PHPMHRLVQGDVGCGKTLVALLAALVAVENGYQVAIMAPTEILAEQHYLNIHRWCEQLGV 363

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V ++T ++    +  ALER+A G+  I+IGTHA+ QD +++++L L IVDEQHRFGV Q
Sbjct: 364 TVALLTSSLKGKAKAGALERVARGEVQIVIGTHAVIQDKVEFHRLGLGIVDEQHRFGVLQ 423

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           R  L +K   P +L+MTATPIPRTL +T  GD+ +S I E P GR P++T I   +R  +
Sbjct: 424 RGLLRKKGENPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPVETKICTDSRRRQ 483

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------AIIHGR 524
           V   ++  ++ G +AY I P +EE ++S  ++  +    + EH  + +       ++HGR
Sbjct: 484 VYGIIRDEVAAGHQAYVIYPLVEESEKSELKAATQ----MAEHLANDVFPDLRLGVLHGR 539

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   +KE+VM SFK     +L++TTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRVG
Sbjct: 540 MKPEEKEAVMRSFKGREIDILVSTTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVG 599

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RG   S CIL+    LS +   RL V+++T DGF IAE DL+ R  G+ LG +Q+G+P F
Sbjct: 600 RGSATSRCILMASDRLSDDGVKRLRVMESTTDGFRIAEADLEIRGPGDFLGTRQAGIPDF 659

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
            +A       +LE AR +A  +  +DP+L +   + +R
Sbjct: 660 RVANILRDGRILEEARAEAFDLAERDPELRAPGHEPLR 697


>gi|121533683|ref|ZP_01665510.1| ATP-dependent DNA helicase RecG [Thermosinus carboxydivorans Nor1]
 gi|121307674|gb|EAX48589.1| ATP-dependent DNA helicase RecG [Thermosinus carboxydivorans Nor1]
          Length = 684

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 241/696 (34%), Positives = 389/696 (55%), Gaps = 40/696 (5%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +GVG   + +L+K+      N     DLL ++P  + DR Y   I  + +  + T    
Sbjct: 12  LKGVGPARAAYLAKL------NIFSIEDLLTHYPRRYEDRSYFKPIKLLEDNEVQTFRAT 65

Query: 76  ISQHSSFQLQKRRP------YKILLNDGTGEITLLFF---YRKTEMLKNVFFEGRKITVT 126
           +       +++R+P       K+ + D +    L++F   YRKT      +  G ++ V 
Sbjct: 66  V-----VAVEERKPRRGLTLTKVTVRDDSAVAQLVWFNQSYRKTR-----YRPGMELIVY 115

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           GK ++  N I +V+P     +  +  +N   I  VY     ++  + ++++ +AL+    
Sbjct: 116 GKAERRFNTIQLVNPEVEIVDEVEELLNVGRIVPVYPATENINQRVLRQLVRQALTDCHP 175

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           +PE +  +++ + +     +A   IH P    D +  + AR RL ++EL   Q  LL ++
Sbjct: 176 IPEILPGNIICRYNLIGRDQALESIHFP---PDKDALTQARRRLVFEELFFLQYGLLYLK 232

Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E  GI    +GK+++++L  +PF+ T  Q+ A+++I  DM     M R+LQGDVG
Sbjct: 233 NRNKHEFQGIKHAQDGKLSKEVLARLPFTLTTDQQVALQEIKADMEDTRPMQRLLQGDVG 292

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A +A+   VE G Q  +MAP  ILA+QH+  + +   N  I + ++TG + +  
Sbjct: 293 SGKTVIAALALVKTVENGYQGAMMAPTEILAEQHFHTLSRLLANLGIRLALLTGRLTKRE 352

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           R + L  + +G   I+IGTHAL QD + +  L LV+ DEQHRFGV+QR  L  K   P V
Sbjct: 353 RDQVLANLRNGLVDIVIGTHALLQDDVHFKHLGLVVTDEQHRFGVRQRALLQAKGKMPDV 412

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRT+ LT  GD+D+S I   P GRKPIKT  +       V   +   ++ G+
Sbjct: 413 LVMTATPIPRTMALTVYGDLDVSVIRTLPPGRKPIKTYSVTGEMRGRVYNFVAREVAAGR 472

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGT 541
           +AY +CP +EE  +   R+ V+ +  L   +   +   ++HG+M   +K++VM++F +G 
Sbjct: 473 QAYVVCPLVEESDKLEARAAVQMYEQLARTYFKGLTCGLVHGKMKSQEKDAVMNAFYSGK 532

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++LIATTVIEVG++V +A++++IE A+ FGLAQLHQLRGR+GRGE  S CIL+     S
Sbjct: 533 IQVLIATTVIEVGVNVPNATVMVIEGADRFGLAQLHQLRGRIGRGEHQSFCILISDSK-S 591

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + S  RL+++  T+DGF++AE+DL  R  G+  G +Q GMP   IA       +L  AR+
Sbjct: 592 EESKERLAIMTTTQDGFVLAEKDLLLRGPGQFFGTRQHGMPDLKIADIVRDLDILLEARQ 651

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
            A+  +T+      +  QS+  L    ++ EAF  I
Sbjct: 652 AAQQAVTRPEIFNEL--QSVLKL----RFGEAFNMI 681


>gi|300814539|ref|ZP_07094795.1| ATP-dependent DNA helicase RecG [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300511366|gb|EFK38610.1| ATP-dependent DNA helicase RecG [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 674

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 234/646 (36%), Positives = 367/646 (56%), Gaps = 33/646 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK---------RRPYKI- 92
           DLL+++P  + D     K+SE          G I + ++F+ +          RR   I 
Sbjct: 31  DLLYFYPRRYEDSSKILKLSE----------GIIGEKATFRCRILSLLDNRNIRRGLSIT 80

Query: 93  --LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150
             L+ D + E  L+FF      +KN    G    + GK ++ + RI +  P  I      
Sbjct: 81  SFLIEDDSAEAKLIFF--NNRFIKNTIDFGETYLIYGKYERFRGRIQLTSPE-IEKVDNI 137

Query: 151 VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH 210
            N   I  +Y+   GL+ +    +I + + +  +  E I  DL++K S      A   IH
Sbjct: 138 RNLGRIRGIYNQTKGLTNNNIDYLIDQVIDK-NLFEECIPNDLIKKYSLIDKNRAIKNIH 196

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            P   K +   + +++RL Y+ELL  ++++L M+ +     GI  N+  KI +  + N+P
Sbjct: 197 RPENRKSY---ALSKQRLVYEELLFFELSILSMQNKNNSSHGIKFNIPNKIYE-FINNLP 252

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  QE  +KDI  DM     + R++QGDVGSGKT+V++I    AV  G Q  IMAP 
Sbjct: 253 YKLTSGQEKVLKDITGDMQNGKSVNRLIQGDVGSGKTIVSIILSLVAVLNGYQCAIMAPT 312

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA+QH+E      ++  + ++++ G+     +++ L   A+G   I+IGTH+L +D +
Sbjct: 313 EILAKQHFENFNSLLEDYGVRIKLLVGSTSSKVKKEILTNTANGLIDILIGTHSLIEDDV 372

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +++ L L ++DEQHRFGV QR KL  K      ++M+ATPIPRTL L    D+D S I  
Sbjct: 373 KFFNLGLNVIDEQHRFGVIQRSKLRYKNDKACNIIMSATPIPRTLSLILYADLDTSIIDT 432

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNS 509
            P GRK IKT+ I  ++++E +  ++  L+ G +AY IC  IE+ ++  N  SV + F  
Sbjct: 433 MPGGRKNIKTLAINSSQVNEALTFIEKELNAGHQAYVICSLIEDNEDFENLESVEKVFKD 492

Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L + F +  +A++HGR+S  +K  VM+ FKN    L+++TTVIEVGI+V +A++++I NA
Sbjct: 493 LKKFFKNYKLALLHGRLSTDEKNKVMEDFKNRKIDLIVSTTVIEVGINVANATVMMIYNA 552

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E FGL+ LHQLRGRVGRG+  S CI L++   S+ S+ R+ ++ ++ DGF IA +DL+ R
Sbjct: 553 ERFGLSTLHQLRGRVGRGDAQSYCI-LFNNSKSEISWRRMKIMTDSTDGFYIANKDLELR 611

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
             G+ILG++QSG+P   +A P     +L  A  DAK+IL +D DLT
Sbjct: 612 GFGDILGVRQSGIPNLRLANPLKDQKILSYASTDAKNILKEDIDLT 657


>gi|160896460|ref|YP_001562042.1| ATP-dependent DNA helicase RecG [Delftia acidovorans SPH-1]
 gi|160362044|gb|ABX33657.1| ATP-dependent DNA helicase RecG [Delftia acidovorans SPH-1]
          Length = 746

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 243/667 (36%), Positives = 362/667 (54%), Gaps = 37/667 (5%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           R IDL  + P  + D      +    E   V I   ++ HS  QL+ RR  K+ ++DGT 
Sbjct: 68  RDIDLALHLPLRYEDETRITALRNAREGDTVQIEATVT-HSEVQLRPRRMLKVTVDDGTA 126

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEA 158
           E  L FF       K +   G ++ + G++K       M+HP +    +   + P  +  
Sbjct: 127 ECVLTFFSFYPSHQKTLSV-GARLRIRGEVKGGFWGRQMLHPAF---RAAGGDLPTALTP 182

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQ---KKSFP---SIAEAFNII 209
           VY    GL     ++  V A+ R  +   LP+     + Q       P   S+ +A   +
Sbjct: 183 VYPTVAGLPQAYIRRAAVTAMLRADLSDTLPQGEHPPVAQFHGNGGLPPLFSLRDALQFL 242

Query: 210 HNPRK----AKDFEWTSPARERLAYDELLAGQIALLLM---RKQFKKEI--GIPINVEGK 260
           H+P      A   + + PA +RL  +ELLA Q++       R + +  +    P++    
Sbjct: 243 HHPTPDVALATLEDHSHPAWQRLKAEELLAQQLSQYEAKRERARLRAPVLRAQPMDSAQG 302

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +A++ L  +PF  T +Q+  + +IL DM ++  M R+LQGDVGSGKT+VA ++  A +EA
Sbjct: 303 LARQFLDQLPFGLTGAQQRVVAEILADMERRMPMHRLLQGDVGSGKTVVAALSAVACIEA 362

Query: 321 GGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           G Q  +MAP  ILA+QH+     +++         V  + G   +  R   LE +  G+A
Sbjct: 363 GWQCALMAPTEILAEQHFGKLVGWLEPLLAPLGKRVAWLAGAQKKKERTAMLELVHSGEA 422

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIP 432
            +++GTHA+ QD +Q+  L L ++DEQHRFGV QRL L QK  A    PH+L+M+ATPIP
Sbjct: 423 ALVVGTHAVIQDQVQFKNLALAVIDEQHRFGVAQRLALRQKLAASGMEPHLLMMSATPIP 482

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++   D+D+S I E P GR PI T +I  +R DEVIER+   ++EG++ YW+CP I
Sbjct: 483 RTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVIERIGAQVAEGRQVYWVCPLI 542

Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           EE +  +  +       L E      + ++H RM   +K++VM+ F  G   +L++TTVI
Sbjct: 543 EESEALDLSNATATHAYLSEMLPGVMVGLLHSRMPTAEKKAVMELFSAGVMGVLVSTTVI 602

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY----HPPLSKNSYTR 607
           EVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY       L + +  R
Sbjct: 603 EVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYSVGDSGRLGETAKDR 662

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L  +  T DGF IA  DL+ R  GE LG +QSG P    A  E    LL+ AR+ A  +L
Sbjct: 663 LRAMAETNDGFEIARRDLEIRGPGEFLGARQSGAPMLRFADLEQDLMLLDWARELAPRML 722

Query: 668 TQDPDLT 674
            Q P L 
Sbjct: 723 EQHPQLA 729


>gi|327461775|gb|EGF08106.1| DNA helicase RecG [Streptococcus sanguinis SK1]
          Length = 671

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 243/671 (36%), Positives = 385/671 (57%), Gaps = 30/671 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+       ET   DLL Y P  + D   +  + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFTKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184
             K K  +  +    +    +D     ++ VY L  G+S    V L K    + L  L  
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQANLVKLIKTAFDQGLDLL-- 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL++    S  EA   +H P+   D++    A  R+ ++EL   Q+ L +++
Sbjct: 167 LEENLPQSLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ K    G+ I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVG
Sbjct: 224 RETKAVSNGLKIDWQLDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A 
Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  I +GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P V
Sbjct: 342 RRETLAAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   ++  V++ LK  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLGVVLDWLKKELHKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G 
Sbjct: 462 QAYFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGR 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++   R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPD 672
            A  I T DP+
Sbjct: 641 VASQI-TADPN 650


>gi|21674393|ref|NP_662458.1| ATP-dependent DNA helicase RecG [Chlorobium tepidum TLS]
 gi|21647574|gb|AAM72800.1| ATP-dependent DNA helicase RecG [Chlorobium tepidum TLS]
          Length = 704

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 241/692 (34%), Positives = 371/692 (53%), Gaps = 39/692 (5%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           P F PL   +GVG K ++ L++      A      DL    P  ++DR    KI  + + 
Sbjct: 2   PPFLPLQVIKGVGPKRAVILAE------AGIRSIADLYDCFPRRYLDRTTIKKIGALRDG 55

Query: 68  RIVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
             VT+ G ++  + F+   R    +K  + DG+G + L +F R           G  +  
Sbjct: 56  ETVTVVGSVTG-TRFEGGGRGGSRFKAQITDGSGVLELTWF-RGVHYFSKTIRSGELVAA 113

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVN------------------FPLIEAVYSLPTGLS 167
            G++        M HP +      D +                  +P  EA+     GL+
Sbjct: 114 HGRVTFFGRTPGMQHPDFDKLGGDDESGDGQRDDELYKTGAIIPIYPTTEAMKQ--AGLN 171

Query: 168 VDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226
               ++I+  A    P+ + E++  +++   +   I EA+  +H P  A+  E    AR 
Sbjct: 172 SAALRRIVHRAFREHPLRITEYLSPEIIAANNLMPIGEAYRQLHFPDSAEQLER---ARY 228

Query: 227 RLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           R+ + EL   Q+   L R + ++ +  +     G+    +   +PF+ T +Q+ A+++I 
Sbjct: 229 RMKWSELFFAQLFFALRRTEERRHLTSVRFERSGEKTASLHERLPFTMTSAQKQAVREIY 288

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D+    +M R+LQGDVGSGKTLVA  AM  AV+ G QA  MAP  ILA QHY  +K   
Sbjct: 289 HDLKSGRQMNRLLQGDVGSGKTLVAQFAMTLAVDNGLQAAFMAPTEILAFQHYAGLKNSL 348

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +   I V ++TG   +  R + L R+  G+  I +GTHA+ +  +Q+ +L LVI+DEQHR
Sbjct: 349 EPLGIRVALLTGRQKKKEREEKLARLERGEIDIAVGTHAIIEAGVQFRRLGLVIIDEQHR 408

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV QR  L +KA  PHVLLMTATPIPRTL +   GD+D+S I E PAGRKPI+T +   
Sbjct: 409 FGVLQRKALQEKAENPHVLLMTATPIPRTLTMGIYGDLDVSIIAEMPAGRKPIQTRLCCE 468

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHG 523
               E+   L+  ++EG++AY + P +EE ++ + ++  E +  L         + +IHG
Sbjct: 469 AEKPELYRLLRKQIAEGRQAYIVYPLVEESEKIDLKAATESYEQLRREVFPELRLGLIHG 528

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           ++   +KE+VM  F++G   +L+ TTVIEVG+DV +A+I++IE+AE FG++QLHQLRGRV
Sbjct: 529 QLPAAEKEAVMAEFRSGRLDILVGTTVIEVGVDVPNATIMVIEHAERFGISQLHQLRGRV 588

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRGE  SSC L+Y   L+ ++  RL  +  T DGF ++E DL+ R  G +LG +QSG   
Sbjct: 589 GRGEHASSCFLVY-TKLTGDAKDRLQAMAATGDGFRLSEIDLQIRGAGNMLGREQSGAAS 647

Query: 644 FL-IAQPELHDSLLEIARKDAKHILTQDPDLT 674
            L IA       ++  AR  A  ++ +D  LT
Sbjct: 648 GLRIADLLTDGDIMRAARAAAFELIRRDETLT 679


>gi|110596932|ref|ZP_01385222.1| ATP-dependent DNA helicase RecG [Chlorobium ferrooxidans DSM 13031]
 gi|110341619|gb|EAT60079.1| ATP-dependent DNA helicase RecG [Chlorobium ferrooxidans DSM 13031]
          Length = 706

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 239/696 (34%), Positives = 379/696 (54%), Gaps = 53/696 (7%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           A +   +GVG K +  L +I        +   DLL Y P  ++DR     I ++++   V
Sbjct: 5   ASIIYLKGVGSKKASILKEI------GISTVDDLLNYFPRRYLDRSAMKCIRDLADGETV 58

Query: 71  TITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           T+ G + +    QL+   P    +K+ L D TG++ L +F R           G  + V 
Sbjct: 59  TVVGTVLKT---QLEGTHPGRARFKVWLGDATGQLELTWF-RGVRFFSRSIVSGDALAVH 114

Query: 127 GKIKKLKNRIIMVHPHY-------------------IFHNSQDVN-FPLIEAVYSLPTGL 166
           GK+     +  M HP Y                   ++H  + ++ +P  +A+     GL
Sbjct: 115 GKVSYFGRQAQMQHPDYDRLTASPHEPGEGEISDFDLYHTGRIISIYPTTDAMKQ--AGL 172

Query: 167 SVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225
           +    + ++  A     V  E  + + +L       + EA++ IH P   +  E    AR
Sbjct: 173 TSKQLRTLVARAFDEYRVRSEENLSQAILSDYHLLPLREAYHEIHFPSSHEALEL---AR 229

Query: 226 ERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
            R+ + EL   Q+   L + + +  +  +     G + +++ R +P+  T +Q+ A+++I
Sbjct: 230 YRMKWSELFYVQLMFALRQSELRTSKRAVIFTHSGVVTEQLYRTLPYELTDAQKQAVREI 289

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
            +D+   + M R+LQGDVGSGKT+VA+ AMA A + G Q+  MAP  ILA QHY  +K+ 
Sbjct: 290 YRDLKTGSPMNRLLQGDVGSGKTIVAMFAMALAADNGLQSAFMAPTEILAVQHYLSMKRL 349

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
            Q   + V ++TG   +  R+  LE +  G+ HI +GTHAL +  + Y  L LV++DEQH
Sbjct: 350 FQPLGLRVGLLTGKQRKKERQALLEALGSGELHIAVGTHALIEGEVSYAGLGLVVIDEQH 409

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           RFGV QR  L +KA  PHVLLMTATPIPRTL +   GD+D+S I + PAGR+P++T +  
Sbjct: 410 RFGVLQRKALREKAVNPHVLLMTATPIPRTLSMGVFGDLDVSVIRQMPAGRRPVRTSLCY 469

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------ 518
              + +V + L+  ++EG++ Y + P +EE ++ + ++ VE F    E  +SS+      
Sbjct: 470 EKELAKVYDFLRSEVAEGRQGYIVYPLVEESEKMDLKAAVESF----EELSSSVFPDLRL 525

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            +IHG+++   KE VMD F+ G   LL+ TTVIEVG+DV +A++++IE+AE FGLAQLHQ
Sbjct: 526 GLIHGQLTPDRKEMVMDEFRRGEVDLLVGTTVIEVGVDVPNATVMVIEHAERFGLAQLHQ 585

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRGE  S+C L+   P +  +  RL  + +T DGF+I+E D + R  G +LG +Q
Sbjct: 586 LRGRVGRGEHGSTCFLICSMP-TAEARERLEAMVSTNDGFIISEIDARIRGVGNVLGKEQ 644

Query: 639 SG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           SG +    IA       +++ AR  A  ++ +D  L
Sbjct: 645 SGPLNGLRIADLTRDFDIMQSARIAAFRVIAEDAQL 680


>gi|15615058|ref|NP_243361.1| ATP-dependent DNA helicase RecG [Bacillus halodurans C-125]
 gi|10175115|dbj|BAB06214.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
          Length = 673

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 234/632 (37%), Positives = 362/632 (57%), Gaps = 25/632 (3%)

Query: 42  IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
            DLL + P  + D   RP I EI  +   T+ G +    + +   ++  ++ +    G +
Sbjct: 23  FDLLEHFPFRYEDYQVRP-IEEIKHDERATVVGTVQSEPTVRYYGKKKNRMSVRVLVGHV 81

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            L   +     LK     G+++T+TGK  + +  + +       H  +      +E +YS
Sbjct: 82  LLTAVFFNRAFLKQQLKVGQEVTLTGKWDQHRLTLTVNEVKQGNHTER----ATVEPIYS 137

Query: 162 LPTGLSVDLFKKIIVEALSRL------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
           +   L+    KK I  AL +       P+ PE  E+  L  K      EA   +H P   
Sbjct: 138 VSGKLTSKTLKKYIHVALRQFGEQITDPLPPEIRERYKLVSKR-----EAVFHLHMP--- 189

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPT 274
            D E    AR R+ Y+E L  Q+ +   RK  +++  G  + V  +   + +  +PFS T
Sbjct: 190 SDREALKQARRRMVYEEFLFFQLKMQAFRKVNREQSNGRAVKVNEQKVDQFIAALPFSLT 249

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           ++QE    +IL DMS   RM R+LQGDVGSGKT+VA I M AAV AG QA +M P  ILA
Sbjct: 250 EAQEKVAGEILTDMSSPYRMNRLLQGDVGSGKTVVAAICMFAAVTAGKQAALMVPTEILA 309

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH + +++    + + + ++TG++    R+ A+  +  G   ++IGTHAL QD + ++ 
Sbjct: 310 EQHAQSLERLFAPSGVRLTLLTGSVKGKRRQAAVTAVKAGDVDVVIGTHALIQDDVAFHD 369

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L LVI DEQHRFGV+QR  L  K   P VL MTATPIPRTL +++ GD+D+S I + PAG
Sbjct: 370 LGLVITDEQHRFGVEQRRALRDKGAYPDVLFMTATPIPRTLAISAFGDMDVSIINQMPAG 429

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           RK I+T     + +  V++ ++  L++G++AY ICP IEE ++ + ++ ++  + L +HF
Sbjct: 430 RKEIETYWAKHDMLTRVLDFMEKELAKGRQAYVICPLIEESEKLDVQNAIDVHSILQQHF 489

Query: 515 TS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                + ++HGR+   +K++VM +F     ++L++TTV+EVG++V +A+I++I +AE FG
Sbjct: 490 EPRFQVGLMHGRLHPSEKDTVMTAFSENKIRILVSTTVVEVGVNVPNATIMVIYDAERFG 549

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LAQLHQLRGRVGRGE  S CILL  P  S+    R+ ++  T DGF ++E DL+ R  G+
Sbjct: 550 LAQLHQLRGRVGRGEHQSYCILLADPK-SEVGKERMRIMTETNDGFTLSERDLELRGPGD 608

Query: 633 ILGIKQSGMPKFLIAQPELHD-SLLEIARKDA 663
             G KQSG+P F +A   +HD   LE AR+DA
Sbjct: 609 FFGAKQSGLPDFKVADV-VHDYRALETARQDA 639


>gi|324995182|gb|EGC27094.1| DNA helicase RecG [Streptococcus sanguinis SK678]
 gi|327469130|gb|EGF14602.1| DNA helicase RecG [Streptococcus sanguinis SK330]
 gi|327473512|gb|EGF18932.1| DNA helicase RecG [Streptococcus sanguinis SK408]
          Length = 671

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 242/671 (36%), Positives = 385/671 (57%), Gaps = 30/671 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+       ET   DLL Y P  + D   +  + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  + V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184
             K K  +  +    +    +D     ++ VY L  G+S    V L K    + L  L  
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL++    S  EA   +H P+   D++    A  R+ ++EL   Q+ L +++
Sbjct: 167 LEENLPQSLLERYQLVSRVEAVRAMHFPKDLTDYK---QALRRVKFEELFYFQMQLQVLK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ K    G+ I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVG
Sbjct: 224 RETKAVSNGLKIDWQLDAVAEKKKSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A 
Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  I +GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P V
Sbjct: 342 RRETLAAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   ++  V++ LK  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLGVVLDWLKKELHKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G 
Sbjct: 462 QAYFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGR 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++   R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPD 672
            A  I T DP+
Sbjct: 641 VASQI-TADPN 650


>gi|298505437|gb|ADI84160.1| ATP-dependent DNA helicase RecG [Geobacter sulfurreducens KN400]
          Length = 767

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 240/698 (34%), Positives = 384/698 (55%), Gaps = 36/698 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           L  P+   +GVG K +  L++  I+   +A        L+  P+ + DR     ++ +  
Sbjct: 65  LETPMQFIKGVGPKMAEILARKGIVTVEDA--------LYLLPNRYEDRRQVVPMNRLRP 116

Query: 67  ERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
                  G +        +  RR ++++  D +G ++  +F      ++  +  GR+   
Sbjct: 117 GETCVFAGEVVSADVVTTKGGRRFFEVMARDASGVMSFKWFNYHAAFMRKAWQPGRRGIF 176

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD----------VNFPLIEAVYSLPTGLSVDLFKKII 175
           TG++ +   +  + HP   +    +          V F  +  VY L  GL+    +K++
Sbjct: 177 TGQVTQYGLQREVHHPDVDWLAEGETVEAAMARDPVGFGRLVPVYPLTEGLNQKALRKVM 236

Query: 176 VEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAY 230
            E + R  P +   +   ++++++   +AEA   +H P    D     E   PA   L +
Sbjct: 237 KEVVDRFAPCVESALPARVIRERALLPLAEALGAVHFPAADADPRALEEGRDPAHRTLVF 296

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           DE    ++ L L R+    E GI  +V     + +L+ +PF+ T++Q   + +I  DM  
Sbjct: 297 DEFFFLELGLALKRRGVTLEPGIAFSVNHTYTKPLLKLLPFALTEAQRRVLAEIKADMMA 356

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            + M R++QGDVG GKTLVAL+A   AVE G Q  IMAP  ILA+QHY  I ++ +   +
Sbjct: 357 PHPMHRLVQGDVGCGKTLVALLAALVAVENGYQVAIMAPTEILAEQHYLNIHRWCEQLGV 416

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V ++T ++    +  ALER+A G+  I+IGTHA+ QD +++++L L IVDEQHRFGV Q
Sbjct: 417 TVALLTSSLKGKAKAGALERVARGEVQIVIGTHAVIQDKVEFHRLGLGIVDEQHRFGVLQ 476

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           R  L +K   P +L+MTATPIPRTL +T  GD+ +S I E P GR P++T I   +R  +
Sbjct: 477 RGLLRKKGENPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPVETKICTDSRRRQ 536

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------AIIHGR 524
           V   ++  ++ G +AY I P +EE ++S  ++  +    + EH  + +       ++HGR
Sbjct: 537 VYGIIRDEVAAGHQAYVIYPLVEESEKSELKAATQ----MAEHLANDVFPDLRLGVLHGR 592

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   +KE+VM SFK     +L++TTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRVG
Sbjct: 593 MKPEEKEAVMRSFKGREIDILVSTTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVG 652

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RG   S CIL+    LS +   RL V+++T DGF IAE DL+ R  G+ LG +Q+G+P F
Sbjct: 653 RGSATSRCILMASDRLSDDGVKRLRVMESTTDGFRIAEADLEIRGPGDFLGTRQAGIPDF 712

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
            +A       +LE AR +A  +  +DP+L +   + +R
Sbjct: 713 RVANILRDGRILEEARAEAFELAERDPELRAPGHEPLR 750


>gi|260435719|ref|ZP_05789689.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 8109]
 gi|260413593|gb|EEX06889.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 8109]
          Length = 838

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/688 (33%), Positives = 380/688 (55%), Gaps = 35/688 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  RGVG K++  L+ I            DLL Y+P   +D     +I  +    
Sbjct: 139 LDSPITQIRGVGPKFAARLASI------GLLLVRDLLRYYPRDHVDYSAMRRIEALVSGE 192

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRK--- 122
             TI   I + + F   +     I+   L D TG + +  F          +F+G++   
Sbjct: 193 TATIVATIRRCNGFVSPRNTNLAIIELQLQDPTGRLKVSRFLAGKRFSSPAYFKGQQRLY 252

Query: 123 -----ITVTGKIKKLKNRIIMVHP-----HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFK 172
                + V+G +K     I    P            +  +   I  VY L  G+  D F+
Sbjct: 253 PVGATVAVSGLVKDGPYGITFQDPLIEVLDSPSSPVKSPSIGRIFPVYPLTEGVGADRFR 312

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            +I + L      P+ +   + ++   P+++EA   +H P   KD E     R RL +DE
Sbjct: 313 SLIDQVLPLAASWPDPLPAAIQRQFLLPALSEALQALHAP---KDRESLDRGRRRLVFDE 369

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGK---IAQKILRNIPFSPTKSQESAIKDILQDMS 289
            L  Q+ LL  R+  +   G  ++++     +  + +  +PF  T +Q+   ++I  D++
Sbjct: 370 FLLLQLGLLRRRQALRSRTGPDLDLQSSSNGLVGEFMDLLPFRFTAAQQRVFQEIEADLA 429

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           +   M R++QGDVGSGKT+VA+ A+ + + +G Q  +MAP  +LA+QHY  + ++     
Sbjct: 430 RNEPMARLVQGDVGSGKTVVAIAALLSTIASGWQGALMAPTEVLAEQHYRNLCQWLPQLH 489

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + V ++TG+ P+  RR+ ++ +A+G   +++GTHAL +D + + +L LV+VDEQHRFGV 
Sbjct: 490 VSVALLTGSTPRPRRRELMDDLANGSLKVLVGTHALLEDPVVFNRLGLVVVDEQHRFGVH 549

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI+T ++   + +
Sbjct: 550 QRDRLLNKGLQPHLLTMTATPIPRTLALSMHGDLDVSQIDELPPGRTPIRTRMLTAAKRE 609

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSD 527
           +  E ++  +  G++AY + P ++E ++   RS VE    L       +A+  +HGR+S 
Sbjct: 610 KAYELIREEVQLGQRAYVVLPLVDESEKLELRSAVEVHAELASEVFPDLAVGLLHGRLSS 669

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K++V+  F  G  ++L++TTV+EVG+DV +AS+++I++AE FGLAQLHQLRGRVGRG 
Sbjct: 670 AEKQAVLTDFAAGKSQVLVSTTVVEVGVDVPEASVMVIDHAERFGLAQLHQLRGRVGRGA 729

Query: 588 EISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
             S C+L+     PL++    RL VL  + DGF IAE DL+ R  G++LG +QSG+P   
Sbjct: 730 AASHCLLINGSSNPLARQ---RLDVLVRSTDGFEIAEMDLRLRGPGQVLGSRQSGLPDLA 786

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDL 673
           +A      ++LE AR  A+ +L  DP+L
Sbjct: 787 LASLADDGAVLEDARTAAQELLNNDPEL 814


>gi|240127511|ref|ZP_04740172.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-93-1035]
 gi|268685886|ref|ZP_06152748.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-93-1035]
 gi|268626170|gb|EEZ58570.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-93-1035]
          Length = 680

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPRLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LRGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662


>gi|325690294|gb|EGD32298.1| DNA helicase RecG [Streptococcus sanguinis SK115]
          Length = 671

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 242/671 (36%), Positives = 386/671 (57%), Gaps = 30/671 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+       ET   DLL Y P  + D   +  + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184
             K K  +  +    +    +D     ++ VY L  G+S    V L K    + L  L  
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL++    S  EA   +H P+   D++    A  R+ ++EL   Q+ L +++
Sbjct: 167 LEENLPQLLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ K    G+ I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVG
Sbjct: 224 RESKAVSNGLKIDWQSDAVAEKKKSLPFELTSAQERSLAEILQDLRSPGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A 
Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  I +GQ  +I+GTHAL Q++++Y+ L LVI+DEQHRFGV+QR  L +K   P V
Sbjct: 342 RRETLAAIENGQVDMIVGTHALIQEAVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ LK  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G 
Sbjct: 462 QVYFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGR 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++   R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPD 672
            A  I T DP+
Sbjct: 641 VASQI-TADPN 650


>gi|324993503|gb|EGC25423.1| DNA helicase RecG [Streptococcus sanguinis SK405]
          Length = 671

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 243/671 (36%), Positives = 385/671 (57%), Gaps = 30/671 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+       ET   DLL Y P  + D   +  + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184
             K K  +  +    +    +D     ++ VY L  G+S    V L K    + L  L  
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL++    S  EA   +H P+   D++    A  R+ ++EL   Q+ L +++
Sbjct: 167 LEENLPQPLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ K    G+ I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVG
Sbjct: 224 RETKAVSNGLKIDWQLDAVAEKKKSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A 
Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  I +GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P V
Sbjct: 342 RRETLAAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   ++  V++ LK  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLGVVLDWLKKELHKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G 
Sbjct: 462 QAYFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGR 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++   R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPD 672
            A  I T DP+
Sbjct: 641 VASQI-TADPN 650


>gi|240013433|ref|ZP_04720346.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae DGI18]
 gi|240120504|ref|ZP_04733466.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID24-1]
          Length = 680

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPRLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LRGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662


>gi|157362881|ref|YP_001469648.1| ATP-dependent DNA helicase RecG [Thermotoga lettingae TMO]
 gi|157313485|gb|ABV32584.1| ATP-dependent DNA helicase RecG [Thermotoga lettingae TMO]
          Length = 783

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 243/661 (36%), Positives = 376/661 (56%), Gaps = 34/661 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+FY P  + DR     ISEIS E  +T  G +    + ++        +L DG  ++ 
Sbjct: 135 DLIFYFPRDYEDRRKIIPISEISFEGKLTTRGKVVNVETKKIGSMTITAAVLADGVSQLL 194

Query: 103 LLFF-----YRKTEMLKNVFFEGRKITVTGKIKKLK-NRIIMVHPHYIFHNSQDVNFPLI 156
           L +F     ++  ++LKN     + I  TG +K  +   I MV+P     +   V   L 
Sbjct: 195 LKWFNQEYLHKGLQVLKN-----KTIYATGLVKHSQFGGIEMVNPEIEPEDGTQVLEIL- 248

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
             +Y L  G+S    ++I+ E +S +    + + ++L++K+    I+ A   IH P+   
Sbjct: 249 -PIYPLTHGISQKEIRRIVRENISCVCHYTDELPEELMKKRKLMDISRALLGIHFPKSNY 307

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
             + +    ERLAY+EL   Q ALLL RK F++  G+P  + GK+A++ LR +PF  T S
Sbjct: 308 HLKKSI---ERLAYEELFLMQFALLLSRKSFEEIGGLPKKIPGKLAEEFLRKLPFKLTDS 364

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+ A + I  D+     M R+LQGDVG GKT+VA +A+    EAG Q+ +MAP  ILA Q
Sbjct: 365 QKEAHRQIRADLMSNKPMSRLLQGDVGCGKTVVAQLAIVDNFEAGFQSAVMAPTSILAMQ 424

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY  +    +   I   ++ G      + K    ++ G+  ++IGTH L Q+ + +  L 
Sbjct: 425 HYRRMSPAFEEMGIRTALLLGETSSREKEKIKRMLSDGEISVVIGTHTLIQEDVSFSNLG 484

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI+DEQHRFGV+QR  L  K  A   L+MTATPIPRTL LT  GD+DI+ I E P GRK
Sbjct: 485 LVIIDEQHRFGVKQREALVSKGKALDTLVMTATPIPRTLALTIYGDLDITVIDEMPPGRK 544

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            +KT+++ ++++++V E +K  ++EG + + + P IEE  +   ++ +     +HE+ + 
Sbjct: 545 DVKTMLVSVSKLEQVYEFVKKEIAEGGQVFIVYPLIEESDKIQAKAAI----RMHEYLSK 600

Query: 517 SI------AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            I       ++HG+MS  +K+ +M+ F  G   +LI+TTVIEVGIDV  A+++IIEN E 
Sbjct: 601 KIFGEFRVGLLHGKMSQQEKDKIMERFATGEFDILISTTVIEVGIDVPRATVMIIENPER 660

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FGLAQLHQLRGR+GRG++   C L+    +  ++  RL     T++GF +AE D+K R  
Sbjct: 661 FGLAQLHQLRGRIGRGDKQGYCFLVVG-NVDDDALERLRYFSMTKNGFEVAEYDMKLRGP 719

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL---TQDPDLT----SVRGQSIRI 683
           GEILG+KQ G+P+  IA       LL  AR DA+ I+    Q PD+     ++ G+ +++
Sbjct: 720 GEILGLKQHGLPELKIADLIRDRELLFRARNDAEEIVRKKEQYPDIVKKVKTIYGERLKL 779

Query: 684 L 684
           +
Sbjct: 780 V 780


>gi|332201120|gb|EGJ15191.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA47901]
          Length = 671

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 245/674 (36%), Positives = 386/674 (57%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GEI     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEIVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEAWQEDPE 656


>gi|256425864|ref|YP_003126517.1| ATP-dependent DNA helicase RecG [Chitinophaga pinensis DSM 2588]
 gi|256040772|gb|ACU64316.1| ATP-dependent DNA helicase RecG [Chitinophaga pinensis DSM 2588]
          Length = 703

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 255/707 (36%), Positives = 390/707 (55%), Gaps = 35/707 (4%)

Query: 4   SFLNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
            F N + + P+   +GVG +    L K I         F DLL+Y P  ++DR    KI 
Sbjct: 2   DFRNAILSNPIEYLKGVGPQRGELLRKEIGVHT-----FRDLLYYFPFRYVDRTNVEKII 56

Query: 63  EISEE-RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF----YRKTEMLKNVF 117
            +  +   V I G I++      ++ +     L D TGEI+L++F    + +  +  NV 
Sbjct: 57  SLHMQMDYVQIRGKITRMEVIGDKRAKRLVATLRDETGEISLVWFQGWQWVEKSLQTNVA 116

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSL-----PTGLSVDLF 171
           +      V GKI      + M HP   +           +E VY         GL+    
Sbjct: 117 Y-----LVFGKIAVFNGYLQMSHPEMDLVTEETATGKQFLEPVYYTTEKLKARGLTAKAI 171

Query: 172 KKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
            K+    L +L    +PE I   +LQ+      A+A   IH P    D    + AR RL 
Sbjct: 172 GKLTKNLLEQLSPGEIPENIPTSILQQYRLMDRAKAHFKIHLPVNEDD---ANLARRRLK 228

Query: 230 YDELLAGQIAL--LLMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQ 286
           ++EL   QI +  L +R+Q +   G   N  G         ++PF+ T +Q+  +K+I Q
Sbjct: 229 FEELFIAQIRICRLKIRRQ-QSSRGFVFNTVGDAFNTFYNEHLPFTLTGAQKRVLKEIRQ 287

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           D +   +M R++QGDVGSGKT+VAL+ M  AV+ G QA +MAP  IL+QQHY+ I +  +
Sbjct: 288 DTATGRQMNRLIQGDVGSGKTMVALLTMLLAVDNGFQACLMAPTEILSQQHYKSISELLE 347

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              + V ++TGN+    R++ L+ +  G+ HI+IGTHAL +  + +  L + IVDEQHRF
Sbjct: 348 QMPVKVALLTGNVKGKARKQILKAVEEGEIHILIGTHALLEPQVVFKNLGMAIVDEQHRF 407

Query: 407 GVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           GV QR +L QK T  PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI TV    
Sbjct: 408 GVAQRARLWQKNTMPPHILVMTATPIPRTLAMTVYGDLDVSVIDELPPGRKPITTVHRTE 467

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIH 522
            +  +V++ +K  + +G++AY + P IE+ +  ++ ++++ +  +   F      I+++H
Sbjct: 468 FQRPQVMDFIKEEIRKGRQAYIVYPLIEDSETLDYENLMKGYEEVKAFFPEPQYYISMVH 527

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GR     KE+ M  F  G  ++++ATTVIEVG++V +AS+++IE+ E FGL+QLHQLRGR
Sbjct: 528 GRQPVDMKETNMQRFVKGDTQIMVATTVIEVGVNVPNASVMVIESTERFGLSQLHQLRGR 587

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG E S CIL+    +  +S  R+ V+  T DGF+I+E+D++ R  G+I G +QSG+ 
Sbjct: 588 VGRGAEQSFCILMTGNKVGADSKERIQVMVQTNDGFVISEKDMELRGPGDIEGTRQSGLI 647

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
              +A       +LE AR  A+ +L +DPDL+    QS++  L   Q
Sbjct: 648 DLKLADIVEDRPILEAARASAEKLLQEDPDLSMPENQSLQQFLAAQQ 694


>gi|150019944|ref|YP_001305298.1| ATP-dependent DNA helicase RecG [Thermosipho melanesiensis BI429]
 gi|149792465|gb|ABR29913.1| ATP-dependent DNA helicase RecG [Thermosipho melanesiensis BI429]
          Length = 773

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/641 (36%), Positives = 366/641 (57%), Gaps = 32/641 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL Y P  + DR     +  + E+  V  +G +S     +         +L+DG  +I 
Sbjct: 126 DLLNYFPRDYEDRRKVMPLPILKEDEKVVTSGVLSAVEKIKKSGLSIVSAVLSDGMYQIL 185

Query: 103 LLFFYRKTEMLKNVF--FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA-- 158
           L +F    + + NV      +K+ V G +KK             F+ + +++ P IE   
Sbjct: 186 LKWF--NQDYIGNVLKTLMRKKVYVFGLVKKG------------FYGTLEIHNPEIEVIG 231

Query: 159 --------VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH 210
                   VYSL  G+  ++ ++II E L  +    +++  +L  K+    + +A+  +H
Sbjct: 232 NSSREIMPVYSLTEGIKQNVIRRIIKENLYNIYNFKDYLPDELKGKRRLLDVYQAYTGMH 291

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            P           +R RLAY+E+L  Q+A  L +K+ +   GI  N EGK++ ++L+ +P
Sbjct: 292 FPL---SMYHQKMSRFRLAYEEILYLQLAFFLSKKENENIGGISKNFEGKLSSELLKQLP 348

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T +Q +A ++I +D+     M R+LQGDVGSGKT+V+ +A+    EAG Q+ +M P 
Sbjct: 349 FKLTNAQLNAYEEIKKDLKSDKPMNRLLQGDVGSGKTIVSELAILDNYEAGFQSAVMVPT 408

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA Q+++ + ++     I V ++ G      + +  + + +G   +++GTHAL Q+ +
Sbjct: 409 SILAIQNFKKMFEHLSRFGIRVALLLGATSTTEKNRIKQMLKNGDLDVVVGTHALIQEDV 468

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L LV++DEQHRFGV+QR +L  K      L+MTATPIPRTL L+  GD+D+S I E
Sbjct: 469 HFKNLGLVVIDEQHRFGVRQRKELIAKGKLVDTLVMTATPIPRTLSLSVYGDLDVSIIDE 528

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P GRKPIKT ++   +IDEV + +   +  G +AY + P I++ ++ + +S V     L
Sbjct: 529 MPKGRKPIKTFVVHQTKIDEVYKFIISEVENGGQAYIVYPLIDDSEKLSVKSAVSMHEKL 588

Query: 511 HEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            E +   I  A+IHGRMSD +K+ +M  F  G  K+LI+T+VIEVGIDV  A++I+IENA
Sbjct: 589 REEYFKDISTALIHGRMSDFEKDEIMYKFSRGEIKILISTSVIEVGIDVPQATVIVIENA 648

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E FGLAQLHQLRGRVGRG + S C L     +S+ +  RL+   +T DGF I+E DLK R
Sbjct: 649 ERFGLAQLHQLRGRVGRGNKQSYCYLTV-GNVSRETLERLNFFASTNDGFKISEYDLKLR 707

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
             GE LG+KQ G+P+F +A       ++ +AR+DAK+I+  
Sbjct: 708 GPGEFLGVKQHGLPEFKVADIINDIDIILMAREDAKYIVNN 748


>gi|261363938|ref|ZP_05976821.1| ATP-dependent DNA helicase RecG [Neisseria mucosa ATCC 25996]
 gi|288567957|gb|EFC89517.1| ATP-dependent DNA helicase RecG [Neisseria mucosa ATCC 25996]
          Length = 680

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 342/600 (57%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + D +G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADDSGSVLFLRFIHFYASHQKQMAAGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP      S  +   L   +Y    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAESSGLAESLT-PIYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +      S    PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q +   +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LGGDGTLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G QA +MAP  ILA+QH+   K++ +   + V  ++G+  +  + +A  ++A G
Sbjct: 303 LTAIESGAQAAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D +++  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 TVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I + P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDQLPPGRTPIKTRLVNNIRRAEVEGFVLNICRKGQQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEV
Sbjct: 483 SETLQLQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A  E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPMLIEQNPEI 662


>gi|260222588|emb|CBA32298.1| ATP-dependent DNA helicase recG [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 729

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 238/670 (35%), Positives = 366/670 (54%), Gaps = 40/670 (5%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           R IDL  + P  + D     K+ ++ +   V I   ++ H     + RR   + ++DGT 
Sbjct: 50  RDIDLALHLPLRYEDETRIVKLIDVRDSTPVQIEATVT-HQEVSYRPRRQLIVTVDDGTD 108

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEA 158
             TL FF       K +   G K+ V G++K       M+HP +    +   + P  +  
Sbjct: 109 TCTLRFFSFYGSQQKALAV-GNKVRVRGEVKGGFLGRTMLHPTF---KAAGGDLPTALTP 164

Query: 159 VYSLPTGLSVDLFKKIIVEALSRL-------PVLPEWIEKDLLQ--KKSFPSIAEAFNII 209
           VY    GL     +K ++  L+R        P   EW++    Q  +++  ++ +A   +
Sbjct: 165 VYPTVAGLPQAYLRKAVLSGLARADLSDTFAPGDLEWLQHRQHQNGQQALWTLRDALQFL 224

Query: 210 HNPRKAKDFEW----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI--NVEG-KIA 262
           H+P      +     + PA +RL  +ELLA QI+ L  R++ +  +  P    VEG  + 
Sbjct: 225 HHPTPDVSLDTLMDHSHPAWQRLKAEELLAQQISQLQSRRE-RASLKAPQLQAVEGGTLH 283

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            ++L  +PF  T +Q+   ++I +DM+++  M R+LQGDVG+GKT+VA ++ A  ++AG 
Sbjct: 284 ARLLAALPFGLTNAQQRVGEEIAKDMARRIPMHRLLQGDVGAGKTVVAALSAAICMDAGW 343

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  +MAP  ILA+QH+  +  + +   I    +TG      RR  L  I  G+A +++GT
Sbjct: 344 QCALMAPTEILAEQHFRKLLGWLEPLGITTAWLTGTQKAKERRAMLALIESGEAQLVVGT 403

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLT 438
           HA+ QD +++  L L I+DEQHRFGV QRL    KL  +   PH+L+MTATPIPRTL ++
Sbjct: 404 HAIIQDKVKFKNLALAIIDEQHRFGVAQRLALRNKLHHEDMEPHLLMMTATPIPRTLAMS 463

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
              D+D+S + E P GR PI T ++   R DEVIER++  +S+G++ YW+CP IEE +  
Sbjct: 464 YYADLDVSTLDELPPGRTPIVTKVVNDARRDEVIERIRAQISQGRQVYWVCPLIEESEAL 523

Query: 499 NFRSVVERFNSLHEHFTSS---------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +  +  +    L E    +         I ++H RM   DK++VM +F  G   +L++TT
Sbjct: 524 DLSNATQTHADLAEALQGATRSDGQPVLIGLLHSRMHVDDKKAVMGAFTAGLMSVLVSTT 583

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH----PPLSKNSY 605
           VIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY     P L + + 
Sbjct: 584 VIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYSTGDAPRLGEAAR 643

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL  +  T DGF IA  DL+ R  GE LG +QSG      A       LL+ A+ +A  
Sbjct: 644 ERLKAMAETNDGFEIARRDLEIRGPGEFLGARQSGEAMLRFADLATDTELLDWAKAEAPM 703

Query: 666 ILTQDPDLTS 675
           +L   P L +
Sbjct: 704 LLDTYPHLAA 713


>gi|240112222|ref|ZP_04726712.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae MS11]
 gi|268598281|ref|ZP_06132448.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae MS11]
 gi|293397684|ref|ZP_06641890.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae F62]
 gi|268582412|gb|EEZ47088.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae MS11]
 gi|291611630|gb|EFF40699.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae F62]
          Length = 680

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LRGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662


>gi|225859451|ref|YP_002740961.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 70585]
 gi|225721463|gb|ACO17317.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 70585]
          Length = 671

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 244/674 (36%), Positives = 386/674 (57%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFILAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEAWQEDPE 656


>gi|325955344|ref|YP_004239004.1| ATP-dependent DNA helicase RecG [Weeksella virosa DSM 16922]
 gi|323437962|gb|ADX68426.1| ATP-dependent DNA helicase RecG [Weeksella virosa DSM 16922]
          Length = 701

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 244/681 (35%), Positives = 391/681 (57%), Gaps = 31/681 (4%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI--SEER 68
            P+   +GVG + +  L K +        R+ DLL + P  ++DR    KI E+  +   
Sbjct: 8   TPIEYLKGVGPERAKLLQKELQI-----FRYEDLLNHFPFRYVDRSRFYKIKELVPTMAE 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF-YRKTEMLKNVFFEGRKITVTG 127
           +  I   +S  +    +K+R     ++D TG++ L++F + K ++ K      + I + G
Sbjct: 63  VQLIGKMVSLETITSGKKKRLVAKFIDD-TGQMELVWFKFTKWQVEKFQKELHQPILIYG 121

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVN------FPLIEAVYSLPT-GLSVDLFKKIIVEALS 180
           K     +   MVHP     ++++        FP+  +   L   G++  + +KII++   
Sbjct: 122 KPNLFNSVFSMVHPE--IEDAENAKTMPLGLFPVYPSTELLAKKGITNRMMQKIILQLFQ 179

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
              ++ E +   L+ +    S A+A+  IH P+ A++      A  RL ++EL   Q+++
Sbjct: 180 ESIMIEENLSTSLVDQLKLISRAKAYAQIHFPKNAEELR---QAEFRLKFEELFFFQLSM 236

Query: 241 LLMR---KQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLR 296
            + +   +Q  K    P    G+       N IPF  T +Q+  +K+I +D+ Q  +M R
Sbjct: 237 FVKKIGHQQTNKSQAFP--RVGEYFNTFYNNYIPFELTNAQKRVVKEIYRDLRQHKQMNR 294

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VAL++M  A++   QA ++AP  ILAQQHY+ + +Y  +  + V +IT
Sbjct: 295 LLQGDVGSGKTMVALLSMLLAIDNNFQATLIAPTEILAQQHYQSVVEYLGDLDVKVALIT 354

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+  ++ R+   E +  G+ +I+IGTHA+ +D++Q+  L L I+DEQHRFGV QR K  +
Sbjct: 355 GSTTKSQRQPIHEGLLSGEINILIGTHAILEDTVQFNNLGLAIIDEQHRFGVAQRAKFWR 414

Query: 417 KATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           KA  P H+L+MTATPIPRTL ++  GD+DIS I E P GRKPI+T+        ++   L
Sbjct: 415 KAKQPPHILVMTATPIPRTLAMSLYGDLDISVIDELPKGRKPIQTIHKTDAHRLQLFHFL 474

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKES 532
           K  + +G++ Y + P IEE K+   + +++ + S+   F     ++ I+HGR    +K+ 
Sbjct: 475 KKEIDKGRQVYIVYPLIEESKKLELKDLMDGYESITREFPLPKYAVGIVHGRQKPAEKDY 534

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M  F  G   +L+ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG E S C
Sbjct: 535 EMQRFIKGETHILVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGAEQSYC 594

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           IL+ H  L++ SY R+S +  T DGF IAE DL+ R  G+++G +QSG+  F +A     
Sbjct: 595 ILMTHGQLNETSYQRISTMCQTNDGFQIAEVDLQLRGPGDLMGTQQSGVLDFKLASLTKD 654

Query: 653 DSLLEIARKDAKHILTQDPDL 673
             L+E +R+ A  +L +DP L
Sbjct: 655 RQLIEWSRQAADRLLKEDPRL 675


>gi|240122804|ref|ZP_04735760.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID332]
 gi|268681416|ref|ZP_06148278.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID332]
 gi|268621700|gb|EEZ54100.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID332]
          Length = 680

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LRGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662


>gi|59800577|ref|YP_207289.1| hypothetical protein NGO0117 [Neisseria gonorrhoeae FA 1090]
 gi|194097746|ref|YP_002000787.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae NCCP11945]
 gi|239998249|ref|ZP_04718173.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 35/02]
 gi|240015874|ref|ZP_04722414.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA6140]
 gi|240114966|ref|ZP_04729028.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID18]
 gi|240117250|ref|ZP_04731312.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID1]
 gi|240124998|ref|ZP_04737884.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-92-679]
 gi|260441218|ref|ZP_05795034.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae DGI2]
 gi|268594104|ref|ZP_06128271.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 35/02]
 gi|268600632|ref|ZP_06134799.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID18]
 gi|268602945|ref|ZP_06137112.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID1]
 gi|268683583|ref|ZP_06150445.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-92-679]
 gi|291044555|ref|ZP_06570264.1| ATP-dependent DNA helicase recG [Neisseria gonorrhoeae DGI2]
 gi|59717472|gb|AAW88877.1| putative DNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|193933036|gb|ACF28860.1| RecG [Neisseria gonorrhoeae NCCP11945]
 gi|268547493|gb|EEZ42911.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 35/02]
 gi|268584763|gb|EEZ49439.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID18]
 gi|268587076|gb|EEZ51752.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID1]
 gi|268623867|gb|EEZ56267.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-92-679]
 gi|291011449|gb|EFE03445.1| ATP-dependent DNA helicase recG [Neisseria gonorrhoeae DGI2]
 gi|317163533|gb|ADV07074.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 680

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPRLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LRGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAGESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662


>gi|147678092|ref|YP_001212307.1| ATP-dependent DNA helicase RecG [Pelotomaculum thermopropionicum
           SI]
 gi|146274189|dbj|BAF59938.1| RecG-like helicase [Pelotomaculum thermopropionicum SI]
          Length = 690

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 236/676 (34%), Positives = 375/676 (55%), Gaps = 23/676 (3%)

Query: 7   NPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           N  FA P+   + VG++ +  L K+   G A      DLL++ P  + DR         +
Sbjct: 3   NEFFAKPVQYLKMVGQRRASALQKL---GIAT---VKDLLYHFPRRYDDRTVLRPAWACA 56

Query: 66  EERIVTITGYISQHSSFQLQKRRPY---KILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           +  + T+ G +   ++  L+ RR     K+ L+DG+G    ++F      +K     G +
Sbjct: 57  QGEVATVGGTVL--AAQDLKPRRGLTITKLALHDGSGTFYAVWF--NQPFIKKNLPPGTR 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           + VTGK++K    + +    Y   + +D ++   +  VY L   L+  + + ++  AL  
Sbjct: 113 VFVTGKVEKGYGAVTVAVEEYEADDGRDRLSTGRLVPVYPLAGRLTQRMLRAMVKSALDE 172

Query: 182 LPVL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
                 +++ + LL+K + P +  A + +H P   ++ E    AR R  ++EL   Q+AL
Sbjct: 173 AKGKEADFLPESLLKKFNLPCLGTALSAVHFP---QNMEEAGAARRRFIFEELFLFQLAL 229

Query: 241 LLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            + RK       +   + EGK+ Q    ++P+  T  QE   K+I  DM     M R+LQ
Sbjct: 230 AMRRKDISGRRKLHTYLPEGKLTQAFKSSLPYRLTGEQEKVWKEISNDMDSPVPMHRLLQ 289

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+++ +A+  AVE+G Q  +MAP  ILA+QHY  ++ Y     +   ++TG  
Sbjct: 290 GDVGAGKTVISTLALLKAVESGLQGALMAPTEILAEQHYLGMRNYLGPIGVEAGLLTGGT 349

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            +  R++ LERI  G   +++GTHAL Q+ + +  L LV+VDEQHRFGV+QR  L  K  
Sbjct: 350 GRKKRKELLERIRSGDLKLVVGTHALLQEGVDFKNLGLVVVDEQHRFGVRQRATLQNKGL 409

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P  L+MTATPIPRT+ +T  GD+DIS I   P GR+P+KT  +    + +    ++  +
Sbjct: 410 YPDTLVMTATPIPRTMAMTLYGDLDISIINGLPPGRQPVKTYAVVPAALPKAYHLVREQV 469

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSL--HEHFTSSIAIIHGRMSDIDKESVMDSF 537
             G++AY +CP +EE ++ +  + VE    L   E     + ++HG+M   +K+ VM SF
Sbjct: 470 RRGRQAYIVCPLVEESEKVDLEAAVELAEKLAAGEFRDCRLGLLHGQMKAEEKDKVMTSF 529

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + G  ++L+ TTVIEVG+DV +A+++II +A+ FGLAQLHQLRGRVGRG   S CIL+  
Sbjct: 530 RQGEIQILVTTTVIEVGVDVPNATVMIILDADRFGLAQLHQLRGRVGRGSHQSYCILVAD 589

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           P  ++    RL  +    DGF +AEEDL+ R  GE  G +QSG+P+F IA       +L+
Sbjct: 590 PK-TEEGRARLKAMVRISDGFALAEEDLRLRGPGEFCGTRQSGLPEFKIADLLRDWKVLQ 648

Query: 658 IARKDAKHILTQDPDL 673
            AR++A   + +DP L
Sbjct: 649 AARQEALAWVEEDPHL 664


>gi|301794675|emb|CBW37126.1| ATP-dependent DNA helicase [Streptococcus pneumoniae INV104]
          Length = 671

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 244/674 (36%), Positives = 386/674 (57%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKIK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEAWQEDPE 656


>gi|254670282|emb|CBA05583.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha153]
          Length = 680

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 230/600 (38%), Positives = 343/600 (57%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTFPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q +   +PF+ T +QE A+ +I  DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LRGDGTLTQALHHALPFALTDAQEKAVSEICHDMAQTHPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D +++  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 TVKIAVGTHALFSDGVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVESFVLNICRKGQQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGELNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEI 662


>gi|149006640|ref|ZP_01830339.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP18-BS74]
 gi|307127909|ref|YP_003879940.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 670-6B]
 gi|147761938|gb|EDK68901.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP18-BS74]
 gi|306484971|gb|ADM91840.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 670-6B]
 gi|332072867|gb|EGI83348.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA17545]
          Length = 671

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 244/674 (36%), Positives = 386/674 (57%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +   +   +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASL---NGMKVLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIETWQEDPE 656


>gi|116516080|ref|YP_816963.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae D39]
 gi|116076656|gb|ABJ54376.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae D39]
          Length = 671

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 244/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEAWQEDPE 656


>gi|205373335|ref|ZP_03226139.1| ATP-dependent DNA helicase recG [Bacillus coahuilensis m4-4]
          Length = 591

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 229/577 (39%), Positives = 348/577 (60%), Gaps = 38/577 (6%)

Query: 113 LKNVFFE----------GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
           +K VFF           G  + +TGK  K +  I + H    F  + +      E +YSL
Sbjct: 1   MKAVFFNQPYAKSKLILGESVIITGKWDKNRQEITVNH----FSTNDNQEKKDYEPIYSL 56

Query: 163 PTGLSVDLFKKIIVEALSRL------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
              L    F+K +  AL         P+ PE     +LQK    S  E F I+H P   +
Sbjct: 57  RGSLKNHTFRKFVALALKEYGDKVVDPLPPE-----ILQKYRLLSKKETFQILHFPGSEE 111

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV---EGKIAQKILRNIPFSP 273
           D +     R R  Y+E L  Q+ +  +RK F+++    I++   EGK+  + + ++PF  
Sbjct: 112 DMK---QGRRRYVYEEFLLFQLKMQSLRK-FQRDHSTGISILYDEGKV-NEFITSLPFPL 166

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q+  + +IL D     RM R+LQGDVGSGKT+VA I++ A++ AG Q  +M P  IL
Sbjct: 167 TVAQKRVVHEILTDCQSPARMNRLLQGDVGSGKTVVAAISLYASITAGFQGALMVPTEIL 226

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH E + K  ++T + V ++T ++    R+  L++++ G+  I++GTHAL QD + ++
Sbjct: 227 AEQHAESLAKMFEHTDVTVALLTSSIKGKKRKVLLDQLSIGRIDILVGTHALIQDEVNFH 286

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +L LVI DEQHRFGV QR  L +K   P+VL MTATPIPRTL +T  G++D+S I E PA
Sbjct: 287 QLGLVITDEQHRFGVAQRKVLREKGENPNVLFMTATPIPRTLAITVFGEMDVSTIDELPA 346

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GRKPI+T       +D V+  LK  +S+G++AY I P IEE  + + ++ ++  + L  +
Sbjct: 347 GRKPIETYWAKEEMLDRVLHFLKKEISKGRQAYVITPLIEESDKLDVQNAIDVHSQLSLY 406

Query: 514 FTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           F S+  + ++HGR+   +KE VM  F   +  +L++TTV+EVG++V +A+++II +AE F
Sbjct: 407 FGSNVKVGLMHGRLHPTEKEQVMKEFSEHSVDILVSTTVVEVGVNVPNATMMIIYDAERF 466

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+QLHQLRGRVGRGEE S CILL +P  +     R++++  T DGF+++E+DL+ R  G
Sbjct: 467 GLSQLHQLRGRVGRGEEQSYCILLANPK-TDVGKERMTIMTETTDGFVLSEKDLELRGPG 525

Query: 632 EILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHIL 667
           +  G KQSGMP+F +A   +HD  +LEIAR DAK ++
Sbjct: 526 DFFGRKQSGMPEFKMADM-VHDYRVLEIARDDAKALI 561


>gi|225568064|ref|ZP_03777089.1| hypothetical protein CLOHYLEM_04137 [Clostridium hylemonae DSM
           15053]
 gi|225163160|gb|EEG75779.1| hypothetical protein CLOHYLEM_04137 [Clostridium hylemonae DSM
           15053]
          Length = 684

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 240/641 (37%), Positives = 362/641 (56%), Gaps = 22/641 (3%)

Query: 43  DLLFYHPSSFIDRHYRP-KISEISEERIVTITGYISQHSSFQLQKRRPYK---ILLNDGT 98
           DL+ Y+P  + D +  P  ISE  E  +VT+TG I      Q+   R  +   I + D T
Sbjct: 39  DLVRYYPRGY-DVYDDPVPISEAEEGSVVTVTGAI--FGRVQVSGTRNMQVTTIYVKDIT 95

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL--I 156
           G + +++F  +   L+N   +G  IT+ G+I   K+ I+M HP  IF+ S      L  +
Sbjct: 96  GTLKVIWF--RMPFLRNTLAKGGVITLRGRIVNRKSGIVMEHPE-IFYPSAKYEEKLHTL 152

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
           + VY+L  GLS +   K + +AL  L +  E +  ++  K        A   IH P   +
Sbjct: 153 QPVYALTAGLSNNAVMKAVQQALMELDLTKETLPDEIRLKYKLAEYNYAIRGIHFP---E 209

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTK 275
           D E     RERL ++E L   +AL  ++   +KE    P+    + A   L  +P+  T 
Sbjct: 210 DKEVFYHVRERLVFEEFLEFILALRRLKDSNEKEQNHYPVKKAPETA-AFLSQLPYELTG 268

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q+   ++I  DM+  + M R++QGDVGSGKT+VA++A+     +G Q  +MAP  +LA+
Sbjct: 269 AQKKVAEEISADMAGASAMSRLVQGDVGSGKTIVAVLALMDTAFSGYQGALMAPTEVLAR 328

Query: 336 QHYEFIKK-YTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           QHYE I   ++Q   ++  E++TG+M    +R+A  RI  G+  II+GTHAL Q+ + Y 
Sbjct: 329 QHYESITNLFSQYGIRLGAELLTGSMTAKEKREAYGRIESGEVQIIVGTHALIQEKVNYK 388

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L LV+ DEQHRFGV+QR    +K   PH+L+M+ATPIPRTL +   GD+DIS I E PA
Sbjct: 389 NLALVVTDEQHRFGVKQREAFARKGGVPHILVMSATPIPRTLAIILYGDLDISVIDELPA 448

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R PIK  ++           +K  + EG++ Y ICP +EE +     +V++    L + 
Sbjct: 449 NRLPIKNCVVDTGYRKTAYTFMKNQVKEGRQCYVICPMVEESEHLEVENVMDYAQMLQDE 508

Query: 514 FTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
              +  +A +HGRM   +K+ +M+ F     ++L++TTVIEVGIDV +A+++++ENAE F
Sbjct: 509 LGEAVGVACLHGRMKQAEKDDIMERFGRNEIQVLVSTTVIEVGIDVPNATVMLVENAERF 568

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GLAQLHQLRGRVGRG   S CI +     SK +  RL +L  + DGF IA EDLK R  G
Sbjct: 569 GLAQLHQLRGRVGRGRHQSYCIFM-SASRSKETKERLDILNKSNDGFKIASEDLKLRGPG 627

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           ++ GI+QSG+  F +        LL+ A + A  +L  + +
Sbjct: 628 DLFGIRQSGLMDFRLGDVFQDAQLLKKANEAADLLLNNEKE 668


>gi|219669851|ref|YP_002460286.1| ATP-dependent DNA helicase RecG [Desulfitobacterium hafniense
           DCB-2]
 gi|219540111|gb|ACL21850.1| ATP-dependent DNA helicase RecG [Desulfitobacterium hafniense
           DCB-2]
          Length = 805

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 247/663 (37%), Positives = 384/663 (57%), Gaps = 26/663 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +GVG + +  L++I            DL FY P  + DR  +  I E+ +  + ++
Sbjct: 145 LQFLKGVGPERAKLLAQI------GLHTVKDLFFYFPRRYEDRSLQ-SIGELKDGELASV 197

Query: 73  TGYISQHSSFQLQKRRPYKILLN-DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +    + Q+ + +   + L+ +  G +    ++ +T +LK  +  G  + VTGK++ 
Sbjct: 198 AGKVV---AGQIARGKLKVVKLSIEQDGRLVYAVWFNQTYILKQ-YPVGTSVIVTGKVR- 252

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWIE 190
            + R+  +    I   +       I  VYS    LS  + + I+   L + P L PE++ 
Sbjct: 253 WQQRVPEIQATDI-QKAGAAQPAAILPVYSETARLSSKVIRTIVQGVLGQAPELFPEFLP 311

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
            +  + K +   A+A+  IH PR    F     ARERL ++E+L  Q+++  +R   ++E
Sbjct: 312 PE--EGKGWVPRAQAYQEIHFPR---TFHSLGQARERLVFEEVLFLQLSVARLRSGVQRE 366

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
               +     + Q+ L ++PF  T++Q+  I++I +DM+    M R++QGDVGSGKT VA
Sbjct: 367 NSPQLKSGESLVQRFLASLPFELTQAQKRVIQEIFRDMANTQGMARLVQGDVGSGKTAVA 426

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           + A+  AV +G Q  +MAP  ILA QHY+ +    +   + V  + G+  ++ R K L  
Sbjct: 427 MAALLMAVGSGYQGAMMAPTEILALQHYQSLAAAFKPLGLHVVCLLGSQTKSERDKILTE 486

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           IA+G+AH+I+GTHAL Q+S+Q++ L L I DEQHRFGV+QR  L  K   PHVL++TATP
Sbjct: 487 IAYGKAHVIVGTHALIQESVQFHSLGLAITDEQHRFGVKQRTSLQTKGENPHVLVLTATP 546

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL LT  GD+ +S + E P GRKPI T  +       + + ++  + +G++ Y +CP
Sbjct: 547 IPRTLALTLYGDLQLSALDEMPQGRKPIMTRKLTERGRPSLEKFMEEQMEKGRQIYVVCP 606

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +EE +  +  S  ERF SL E F +  ++++HGRM  + KE +M +F+ G   +L++TT
Sbjct: 607 LVEESENVDLISATERFQSLLERFPNRRVSLLHGRMKGVQKEEIMTAFQKGEVDILVSTT 666

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V+EVG++V +A++++IE AE FGLAQLHQLRGRVGRG E S C LL     +KNS  RL 
Sbjct: 667 VVEVGVNVPNATVMVIEGAERFGLAQLHQLRGRVGRGSEQSYCFLLSD---AKNS-RRLE 722

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           VL  T+DGF IAEEDLK R  GE+LG +Q G+ +  +A       L+E A + A+ +LT 
Sbjct: 723 VLCETQDGFKIAEEDLKIRGAGELLGTRQHGVMELRLADLSRDGRLVEQAYQLAQKVLTH 782

Query: 670 DPD 672
            PD
Sbjct: 783 -PD 784


>gi|332363341|gb|EGJ41126.1| DNA helicase RecG [Streptococcus sanguinis SK49]
          Length = 671

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 241/671 (35%), Positives = 384/671 (57%), Gaps = 30/671 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+       ET   DLL Y P  + D   +  + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184
             K K  +  +    +    +D     ++ VY L  G+S    V L K    + L  L  
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQANLVKLIKTAFDQGLDLL-- 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL++    S  EA   +H P+   D++    A  R+ ++EL   Q+ L +++
Sbjct: 167 LEENLPQSLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ K    G+ I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVG
Sbjct: 224 RETKAVSNGLKIDWQSDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M    
Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELNLALLTGGMKATE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  I +GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P V
Sbjct: 342 RRETLAAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   ++  V++ LK  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLGVVLDWLKKELHKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G 
Sbjct: 462 QAYFISPLIEESEALDLKNAIALEGELTAYFGHQAQVALLHGKMKSEEKEAIMQDFKEGR 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++  +R+ ++    DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 ESGKSRMKIMTEMTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPD 672
            A  I T DP+
Sbjct: 641 VASQI-TADPN 650


>gi|171464093|ref|YP_001798206.1| ATP-dependent DNA helicase RecG [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193631|gb|ACB44592.1| ATP-dependent DNA helicase RecG [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 695

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 238/619 (38%), Positives = 358/619 (57%), Gaps = 39/619 (6%)

Query: 87  RRPYKILLNDGTGEITLLF--FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
           RR   + + D T  + L F  FY   +    V   G  + V G++++      MVHP  +
Sbjct: 66  RRQMVVTIEDETETLNLRFLNFYPSQQKQMAV---GVNVRVRGEVREGFQGPEMVHP-IV 121

Query: 145 FHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEAL-------SRLPVLPEWIEKDLLQK 196
              + D   P  +  VY     +S  + +K + +AL       S    LP+ +  +LL  
Sbjct: 122 RAVAPDAPLPTSLTPVYPASVSVSQTVIRKAVNQALRDPSLQKSLAESLPKKLMSELLPS 181

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
             +PS+  A   +H P    +     + T PA  R+ ++ELLA QI+L        +E  
Sbjct: 182 NDWPSLQSAIKYLHQPPADANTQSLLDRTHPAWRRVQFEELLAQQISLKRAHA-IHRERQ 240

Query: 253 IP-----------INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            P              +  + + +L+ +PF  T +Q+    +I +D+S+   M R+LQGD
Sbjct: 241 APSFEKMKDEGKGKGGKQGLEEGLLKVLPFKLTNAQDRVWSEISKDLSKSFPMNRLLQGD 300

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+V+ +A A A++ G QA IMAP  ILA+QHY  +K++ +   + +  ++G++  
Sbjct: 301 VGSGKTVVSALAAARAMDHGYQAAIMAPTEILAEQHYLKMKEWFEPLGVRIAWLSGSLKA 360

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +R A   I +GQA +IIGTHAL Q+++ + KL L ++DEQHRFGV+QRL++ Q+  + 
Sbjct: 361 KEKRLAQGEIENGQAQLIIGTHALIQENVCFAKLGLAVIDEQHRFGVRQRLEIQQRVGSE 420

Query: 422 ----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
               H L+M+ATPIPRTL +T   D+D+S I E P GRKPI T ++  +R DEVI  L+ 
Sbjct: 421 LFYCHQLMMSATPIPRTLAMTYYADLDVSVIDELPPGRKPIATKVVKASRRDEVIGGLRS 480

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            LS+G +AYW+CP IEE +    ++  E F  L +      + +IHGR+   +K +VM +
Sbjct: 481 WLSKGLQAYWVCPLIEESEALQLQTATESFEQLTQVLPDFKVGLIHGRLKAEEKAAVMAA 540

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK    +LL+ATTVIEVG++V +A++++IE+AEHFG AQ+HQLRGRVGRG   S CIL+Y
Sbjct: 541 FKANEIQLLVATTVIEVGVNVPNAALMVIEHAEHFGYAQIHQLRGRVGRGSAESVCILMY 600

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG--MPKFLIAQPELHDS 654
             PLS  +  RL  L+ T DGF+IAE DL  R  GE+LG KQSG  M +F+  Q +    
Sbjct: 601 AEPLSMAAKERLQTLRETSDGFVIAERDLLLRGPGELLGAKQSGDAMLRFVDLQRDAW-- 658

Query: 655 LLEIARKDAKHILTQDPDL 673
           L+E+A++ A  +L +  DL
Sbjct: 659 LIELAQQAADRLLAEHADL 677


>gi|323127969|gb|ADX25266.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 671

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 246/668 (36%), Positives = 379/668 (56%), Gaps = 26/668 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP++  +G+G K +    K+         +  DLL Y+P  + D   +  +  +  E+
Sbjct: 3   LTAPIAHLKGLGPKSAEKFQKL------GIYQIEDLLLYYPFRYEDFKSKSVLELLDGEK 56

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            V ITG +    + Q    +  ++      GE+ +   +     L++    G ++ + GK
Sbjct: 57  AV-ITGTLVTPPNVQYYGFKRNRLTFKIKQGEVVIGVSFFNQPYLQDKLTLGNEVAIFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             + K  +  +       +        ++ VY +  G+S     K I  A     L  L 
Sbjct: 116 WDQKKTALTGMKLLMTVEDD-------LQPVYHVAQGVSQTALIKAIKAAFDSGALDELK 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E I   LL+K       EA   +H P+   D++    A  R+ ++EL   Q+ L ++++ 
Sbjct: 169 ENIPDSLLEKYRLMPRQEAVYAMHFPKTLTDYK---QALRRIKFEELFYFQLRLQVLKQA 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + E  G+ I  + +     +  +PF  T++QE ++++IL+DM     M R+LQGDVGSG
Sbjct: 226 NRSENSGLAIAFDQEKINHQIAALPFPLTQAQERSLQEILRDMRSGAHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT++A +AM AA  AG Q+ +M P  ILA+QHY+ + K   N  I   I+T  M    +R
Sbjct: 286 KTVIASLAMYAAYTAGLQSALMVPTEILAEQHYDSLIKLFPNLSIA--ILTSGMKAPEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
            AL  IA G   +I+GTHAL QD++QY+KL LVI DEQHRFGV+QR    +K   P VL+
Sbjct: 344 TALAAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++D V+  +K  L +G +A
Sbjct: 404 MTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQQLDTVLAWMKTELEQGAQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ V+    L  +F +S  IA++HG+M   +KE++M +FK     
Sbjct: 464 YVISPLIEESEALDLKNAVDLEAELKAYFKASARIALMHGKMKADEKEAIMQAFKAQEID 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LL++TTVIEVG++V +ASI++I +A+ FGL+QLHQLRGRVGRG + S  IL+ +P  +++
Sbjct: 524 LLVSTTVIEVGVNVPNASIMVIMDADRFGLSQLHQLRGRVGRGHKQSYAILVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R++++  T DGF++AE DLK R  GEI G +QSG+P+F  A      ++LE ARK A
Sbjct: 583 GKERMAIMTTTNDGFVLAEADLKMRGAGEIFGTRQSGLPEFKTADIVEDYAILEEARKVA 642

Query: 664 KHILTQDP 671
             I T +P
Sbjct: 643 TMI-TSEP 649


>gi|116070692|ref|ZP_01467961.1| ATP-dependent DNA helicase RecG [Synechococcus sp. BL107]
 gi|116066097|gb|EAU71854.1| ATP-dependent DNA helicase RecG [Synechococcus sp. BL107]
          Length = 773

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 248/714 (34%), Positives = 397/714 (55%), Gaps = 53/714 (7%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RPS    L +P++  +GVG K +  L+ +      +  R      ++P   +D     +I
Sbjct: 69  RPSL--DLESPITRIKGVGPKLASRLASLNLLLVKDLLR------HYPRDHVDYSSMRRI 120

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVF 117
             +      TI   I + + F +  R P     ++ L D TG + +  F          +
Sbjct: 121 EALVAGETATIVATIRRCNGF-VSPRNPNLAILELQLQDPTGRLKVTRFLAGKRFSSQAY 179

Query: 118 FEGRK--------ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA-------VYSL 162
            +G++        + V+G +K     +    P  +    ++ + P+  A       VY+L
Sbjct: 180 LKGQQRLYPAGASVAVSGLVKDGAYGLSFQDP--LIEVLENPSSPVKSASIGRLLPVYAL 237

Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIE---KDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
             G+  D F+ +I + L   P+  +W E   + L Q     S++EA   +H P   KD  
Sbjct: 238 TEGVGADRFRGLIEQVL---PLTEQWTEPLPEALRQTFDLLSVSEALQALHAP---KDRT 291

Query: 220 WTSPARERLAYDELLAGQIALLL----MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
                R RL +DE L  Q+ LL     +R +   E+G+  + +G + Q     + F  T+
Sbjct: 292 TLDRGRHRLVFDEFLLLQLGLLRRRQALRSRPGPELGLLPSTQG-LVQDFRDLLSFQFTE 350

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q+  + +I  D++Q   M R++QGDVGSGKT+VA+ A+ + + +G Q  +MAP  +LA+
Sbjct: 351 AQQRVLHEIEADLAQSKPMARLVQGDVGSGKTVVAIAALLSTIASGWQGALMAPTEVLAE 410

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QH+  +  +     I VE++TG+ P+  RR+ L+ +A G   +++GTHAL +D + + +L
Sbjct: 411 QHHRNLCHWLPQLHITVELLTGSTPRPRRRQLLDDLASGSLKLLVGTHALLEDPVVFERL 470

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LV+VDEQHRFGV QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR
Sbjct: 471 GLVVVDEQHRFGVHQRDRLLNKGLQPHLLTMTATPIPRTLALSVHGDLDVSQIDELPPGR 530

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHF 514
            PIKT ++   + ++    ++  +S+G++AY + P +EE ++   RS VE    L  E F
Sbjct: 531 TPIKTAMLSAGQREKAYALIRDEVSKGQRAYVVLPLVEESEKLELRSAVEVHAELVSEVF 590

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               + ++HGR+S ++K+ V+ SF +G C++L++TTV+EVG+DV +AS+++I++AE FGL
Sbjct: 591 PDLQVGLLHGRLSSVEKQEVLASFSSGACQVLVSTTVVEVGVDVPEASVMMIDHAERFGL 650

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           AQLHQLRGRVGRG   S C+L+     PL++    RL VL  + DGF IAE DL+ R  G
Sbjct: 651 AQLHQLRGRVGRGAAASHCLLINGSSNPLARQ---RLDVLVRSTDGFEIAEMDLRLRGPG 707

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           ++LG +QSG+P   +A      ++LE AR  A+ +L  DP+L   R   +R LL
Sbjct: 708 QVLGTRQSGLPDLALASLADDAAVLEDARTAAQDLLRDDPNLE--RCPQLRALL 759


>gi|251783245|ref|YP_002997550.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391877|dbj|BAH82336.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 676

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 246/668 (36%), Positives = 379/668 (56%), Gaps = 26/668 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP++  +G+G K +    K+         +  DLL Y+P  + D   +  +  +  E+
Sbjct: 8   LTAPIAHLKGLGPKSAEKFQKL------GIYQIEDLLLYYPFRYEDFKSKSVLELLDGEK 61

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            V ITG +    + Q    +  ++      GE+ +   +     L++    G ++ + GK
Sbjct: 62  AV-ITGTLVTPPNVQYYGFKRNRLTFKIKQGEVVIGVSFFNQPYLQDKLTLGNEVAIFGK 120

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             + K  +  +       +        ++ VY +  G+S     K I  A     L  L 
Sbjct: 121 WDQKKTALTGMKLLMTVEDD-------LQPVYHVAQGVSQTALIKAIKAAFDSGALDELK 173

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E I   LL+K       EA   +H P+   D++    A  R+ ++EL   Q+ L ++++ 
Sbjct: 174 ENIPDSLLEKYRLMPRQEAVYAMHFPKTLTDYK---QALRRIKFEELFYFQLRLQVLKQA 230

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + E  G+ I  + +     +  +PF  T++QE ++++IL+DM     M R+LQGDVGSG
Sbjct: 231 NRSENSGLAIAFDQEKINHQIAALPFPLTQAQERSLQEILRDMRSGAHMNRLLQGDVGSG 290

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT++A +AM AA  AG Q+ +M P  ILA+QHY+ + K   N  I   I+T  M    +R
Sbjct: 291 KTVIASLAMYAAYTAGLQSALMVPTEILAEQHYDSLIKLFPNLSIA--ILTSGMKAPEKR 348

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
            AL  IA G   +I+GTHAL QD++QY+KL LVI DEQHRFGV+QR    +K   P VL+
Sbjct: 349 TALAAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGDNPDVLM 408

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++D V+  +K  L +G +A
Sbjct: 409 MTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQQLDTVLAWMKTELEQGAQA 468

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ V+    L  +F +S  IA++HG+M   +KE++M +FK     
Sbjct: 469 YVISPLIEESEALDLKNAVDLEAELKAYFKASARIALMHGKMKADEKEAIMQAFKAQEID 528

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LL++TTVIEVG++V +ASI++I +A+ FGL+QLHQLRGRVGRG + S  IL+ +P  +++
Sbjct: 529 LLVSTTVIEVGVNVPNASIMVIMDADRFGLSQLHQLRGRVGRGHKQSYAILVANPK-TES 587

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R++++  T DGF++AE DLK R  GEI G +QSG+P+F  A      ++LE ARK A
Sbjct: 588 GKERMAIMTTTNDGFVLAEADLKMRGAGEIFGTRQSGLPEFKTADIVEDYAILEEARKVA 647

Query: 664 KHILTQDP 671
             I T +P
Sbjct: 648 TMI-TSEP 654


>gi|323489548|ref|ZP_08094775.1| ATP-dependent DNA helicase RecG [Planococcus donghaensis MPA1U2]
 gi|323396679|gb|EGA89498.1| ATP-dependent DNA helicase RecG [Planococcus donghaensis MPA1U2]
          Length = 682

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 245/667 (36%), Positives = 386/667 (57%), Gaps = 29/667 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++T +GVGK+ +  L ++       ET   DL+   P    D   +        ER VT+
Sbjct: 9   VATLKGVGKQAAETLQEM-----KIET-LHDLIMTFPYRHEDFQLKDLADTPHNER-VTV 61

Query: 73  TGYISQHSSFQL----QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            G +    S       + R   ++L+  G   I  +FF +    +K     G  ITVTGK
Sbjct: 62  EGRVESEPSVLFLGKNKSRTQVRVLV--GRHLIKAIFFNQP--YVKAKLHLGEIITVTGK 117

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPE 187
             + + ++I V  H I   +   +F   E VYSL   +    F+K++ +AL  +   + +
Sbjct: 118 WDRGR-QVITVSSHTIGPRTNGADF---EPVYSLKGSIHQKTFRKLMRQALDLVKEDIED 173

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            + K L+       I +A   +H P    D E    AR R  Y+ELL  Q+ +  +RK+ 
Sbjct: 174 CLPKSLVDTYQLAPIQDALEWVHFP---PDGEKVKQARRRFVYEELLVFQLKMQALRKKN 230

Query: 248 KKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           ++E G   I+ + +  +K + ++PF  T +Q+  + +I +DM +  RM R+LQGDVGSGK
Sbjct: 231 REEEGGSFIDYDLEQLKKFIESLPFDLTDAQKRVVNEICKDMKEPFRMNRLLQGDVGSGK 290

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA IA+ AA  AG Q  +MAP  ILA+QH   ++++ +   + + ++TG++    R+ 
Sbjct: 291 TVVAAIALYAAFTAGLQGALMAPTEILAEQHANTLEQWFRPFSLNIALLTGSVKGKKRQL 350

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE++A G+  ++IGTHAL Q  +++ KL LVI DEQHRFGV QR  L  K   P VL M
Sbjct: 351 ILEQLAAGEIDLLIGTHALIQPEVRFDKLGLVITDEQHRFGVDQRRVLKDKGYNPDVLFM 410

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL +++ G++D+S I E P GRK I+T  +      +++ R++  L+ G++AY
Sbjct: 411 TATPIPRTLAISAFGEMDVSIIDEMPVGRKEIETYWMKKEMFGKIVGRMEKELAAGRQAY 470

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP IEE  + ++++ V+ F  L  +F    ++ ++HGR+   +KE  M  F  G   +
Sbjct: 471 VICPLIEESDKLDYQNAVDLFQQLAIYFKDRFTVGLMHGRLHPDEKEQTMREFSEGQVDV 530

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVG++V +AS ++I +AE FGL+QLHQLRGRVGRG E S C+LL  P  ++  
Sbjct: 531 LVSTTVVEVGVNVPNASFMLIYDAERFGLSQLHQLRGRVGRGSEQSYCVLLADPK-TEIG 589

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDA 663
             R++ +  T DGF++AE+DL+ R  G+  G KQSG+P+F +A   +HD   LE ARKDA
Sbjct: 590 KERMTTMTETNDGFVLAEKDLQLRGPGDFFGRKQSGIPEFKMADL-IHDYRALEAARKDA 648

Query: 664 KHILTQD 670
           + +++ +
Sbjct: 649 EKLISSE 655


>gi|295109962|emb|CBL23915.1| ATP-dependent DNA helicase RecG [Ruminococcus obeum A2-162]
          Length = 681

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 234/678 (34%), Positives = 386/678 (56%), Gaps = 23/678 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L T +GVG+K      ++       +T   DLL Y+P ++        I+++ E  +  +
Sbjct: 5   LQTLKGVGEKTEKLFFRL----GIYDTE--DLLHYYPRNYDAFEAPVDIADLEEGTVKAV 58

Query: 73  TGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           +  +   S   ++     +I+   + D +G++++++F      L+ +  +G    + G++
Sbjct: 59  SAAVC--SGVYVRSAGGKQIITATVADQSGKLSVIWF--NMPYLRTILKKGSTFVLRGRV 114

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            K +NRI M HP      + +     ++ +Y L +GLS     K I + L  LP+  E++
Sbjct: 115 IKKQNRIQMEHPEVFTPAAYEEILHSLQPIYGLTSGLSNKTITKTIRQLLENLPMYSEFL 174

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            +D+ Q+     I  A   IH P   ++      +R+RL +DE L   +++ +M+++ ++
Sbjct: 175 SEDIRQRYQLADINYALRTIHFPLSMEEL---LVSRKRLVFDEFLLFILSIQMMKEKNEE 231

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
                PI  +  + ++I+ N+P+S T +Q +   +I +DMS +  M R++QGDVGSGKT+
Sbjct: 232 TPNYFPIQ-KTWVTEQIIENLPYSLTNAQLNTWHEIERDMSGQALMSRLVQGDVGSGKTI 290

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY--TQNTQIIVEIITGNMPQAHRRK 366
           +A +AM  + E G Q+ +M P  +LA+QHY+   +    Q       ++TG+     +R+
Sbjct: 291 IAFLAMILSCENGYQSALMVPTEVLAKQHYKSFMELLAQQGLDFCTVLLTGSNTAKEKRE 350

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
              +IA G+A IIIGTHAL Q+ + Y  L LVI DEQHRFGV+QR  L ++   P+VL+M
Sbjct: 351 IYAKIASGEAQIIIGTHALIQEKVVYKNLSLVITDEQHRFGVKQRESLAERGNPPNVLVM 410

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL +   GD+DIS I E PA R PIK  ++  +   +    ++  + EG++ Y
Sbjct: 411 SATPIPRTLAIILYGDLDISVIDELPARRLPIKNCVVDTSYRPKAYSFIQRQVREGRQIY 470

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKL 544
            ICP +EE +  +  +V++  + +   F S I I  +HG+M   +K  +M+ F     ++
Sbjct: 471 IICPMVEESEGLDAENVLDYTSKIKSIFPSDIQIEYLHGKMKASEKNKIMERFAANEIQI 530

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE  S CI +        S
Sbjct: 531 LVSTTVVEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEHQSYCIFVQGNKEDTTS 590

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL +L  + DGF IA EDLK R  G++ GI+QSG+ +F I       S+L+ A + A 
Sbjct: 591 -KRLEILNKSNDGFYIAGEDLKLRGPGDLFGIRQSGVMEFRIGDIYNDSSILKSASEAAS 649

Query: 665 HILTQDPDLTSVRGQSIR 682
            IL+ DPDLT  + Q ++
Sbjct: 650 EILSLDPDLTLPQNQLLK 667


>gi|149001989|ref|ZP_01826943.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus
           pneumoniae SP14-BS69]
 gi|147759798|gb|EDK66788.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus
           pneumoniae SP14-BS69]
          Length = 671

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 244/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLSQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II  A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMAADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIETWQEDPE 656


>gi|332074033|gb|EGI84511.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA41301]
          Length = 671

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 243/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +I+GTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIVGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEAWQEDPE 656


>gi|168491421|ref|ZP_02715564.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           CDC0288-04]
 gi|183574121|gb|EDT94649.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           CDC0288-04]
          Length = 671

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 244/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAANFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEAWQEDPE 656


>gi|325696972|gb|EGD38859.1| DNA helicase RecG [Streptococcus sanguinis SK160]
          Length = 671

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 241/671 (35%), Positives = 383/671 (57%), Gaps = 30/671 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+       ET   DLL Y P  + D   +  + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184
             K K  +  +    +    +D     ++ VY L  G+S    V L K    + L  L  
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQANLVKLIKTAFDQGLDLL-- 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL++    S  EA   +H P+   D++    A  R+ ++EL   Q+ L +++
Sbjct: 167 LEENLPQSLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ K    G+ I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVG
Sbjct: 224 RETKAVSNGLKIDWQSDAVAEKKKSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A 
Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  I  G+  +I+GTHAL Q+ + Y+ L LVI+DEQHRFGV+QR  L +K   P V
Sbjct: 342 RRETLAAIEKGRVDMIVGTHALIQEGVHYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ LK  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G 
Sbjct: 462 QAYFISPLIEESEALDLKNAIALEEELTAYFGHQAQVALLHGKMKSEEKEAIMQDFKEGR 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++   R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPD 672
               I T DP+
Sbjct: 641 VTSQI-TADPN 650


>gi|319944239|ref|ZP_08018515.1| DNA helicase RecG [Lautropia mirabilis ATCC 51599]
 gi|319742534|gb|EFV94945.1| DNA helicase RecG [Lautropia mirabilis ATCC 51599]
          Length = 769

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 246/714 (34%), Positives = 372/714 (52%), Gaps = 99/714 (13%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK----------RRPYKI 92
           DL+ + P  + D           E R+V I G +   SS Q+Q           RR  ++
Sbjct: 54  DLVLHLPLRYED-----------ETRLVPI-GSLVHGSSAQIQATVTRAEVTRGRRALQV 101

Query: 93  LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN 152
            +NDGTGE+ L F +     L      GR +   G+++       MVHP Y    S+D  
Sbjct: 102 WVNDGTGELQLRFLHFYPSQLTQ-LQPGRLVRAYGELRVGLFGREMVHPRYRM-VSEDTP 159

Query: 153 FP-LIEAVYSLPTGLSVDLFKKIIVEALSRL---PVLPEWIEKDLLQKKS---------- 198
            P  +  VY    GL     ++ I  AL+       LP  +   L+              
Sbjct: 160 LPDRLTPVYPTVAGLGQATLRREIDRALADCRWQDTLPPTLLTALMSGSGDGKQASGRPG 219

Query: 199 ----------FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244
                      P + E+  +IH+P    D     E  +PA +R+  +EL+A Q++L   R
Sbjct: 220 ADPVASLLAGLPPLLESLRLIHHPPPGTDLDALLERRTPACQRIVLEELVAQQLSLRRAR 279

Query: 245 KQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +    + G P+ N +G+ A  +L ++PF+ T +Q     +I  D++++  M R+LQGDVG
Sbjct: 280 QLRAGQRGQPLANRDGEAA--LLASLPFALTGAQRRVCDEIAADLARQQPMNRLLQGDVG 337

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A +A   AV +G QA +MAP  ILA+QHYE +  + +   + V  + G++  A 
Sbjct: 338 SGKTVIAALAAMVAVGSGWQATLMAPTEILARQHYERLSPWLEPLGVRVGWLAGSLGAAA 397

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           +R+  + +A G+  ++IGTHAL +DS+ + +L L IVDEQHRFGV QRL L  + T    
Sbjct: 398 KRRVKQAVAAGEVDVLIGTHALIEDSVVFPRLALAIVDEQHRFGVAQRLALRGEGTRDAG 457

Query: 421 ----------------------------------------PHVLLMTATPIPRTLVLTSL 440
                                                   PH L+MTATPIPRTL +T  
Sbjct: 458 TAAEEPERAGATQDTAQAAAGQDGRVRSAAEGHAGEDGFLPHQLMMTATPIPRTLAMTFY 517

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D+D+S I E P GR+P+ T +I  +R D+V+E +   ++EG++AYW+CP +EE +  + 
Sbjct: 518 ADLDVSVIDELPPGRQPVTTKLIADSRRDQVVENVGRWVAEGRQAYWVCPLVEESEALDL 577

Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           ++ ++    L          ++HGR+S  +K+ VM +FK G   LL+ATTVIEVG+DV +
Sbjct: 578 QNAIDTREQLQAALPQVRTGLVHGRLSAAEKDEVMAAFKAGELDLLVATTVIEVGVDVPN 637

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           AS+++IE+AE FGL+QLHQLRGRVGRG   S C+LLY  P    +  RL+ ++ T+DGF 
Sbjct: 638 ASLMVIEHAERFGLSQLHQLRGRVGRGTAQSLCVLLYRHPPGAIARERLATMRETQDGFE 697

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           IA  DL+ R  GE+LG +QSG      A       L++IA   ++ +L   PD+
Sbjct: 698 IARRDLELRGPGELLGARQSGAMLLRFADLGRDAPLVDIAHALSERLLEARPDV 751


>gi|328945679|gb|EGG39830.1| DNA helicase RecG [Streptococcus sanguinis SK1087]
          Length = 671

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 244/671 (36%), Positives = 385/671 (57%), Gaps = 30/671 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+       ET   DLL Y P  + D   +  +     E+
Sbjct: 3   LHQPLTVLPGVGPKSAEKFTKL-----GLET-LQDLLLYFPFRYEDFKSKNVLGLEDGEK 56

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            V ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 57  AV-VSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184
             K K  +  +    +    +D     ++ VY L  G+S    V L K    + L  L  
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL++    S  EA   IH P+   D++    A  R+ ++EL   Q+ L +++
Sbjct: 167 LEENLPQPLLERYQLVSRVEAVRAIHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ K    G+ I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVG
Sbjct: 224 RETKAVSNGLKIDWQLDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A 
Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  I  GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P V
Sbjct: 342 RRETLSAIEKGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGR+PI T  +   +++ V++ LK  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRRPIITRWVKHEQLEVVLDWLKKELHKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++ +     L  +F+  + +A++HG+M   +KE++M  FK G 
Sbjct: 462 QVYFISPLIEESEALDLKNAIALEEELTAYFSQQAQVALLHGKMKSEEKEAIMQDFKEGR 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++   R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPD 672
            A  I T DP+
Sbjct: 641 VASQI-TADPN 650


>gi|56476706|ref|YP_158295.1| ATP-dependent DNA helicase RecG [Aromatoleum aromaticum EbN1]
 gi|56312749|emb|CAI07394.1| RecG-like helicases [Aromatoleum aromaticum EbN1]
          Length = 652

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 234/628 (37%), Positives = 352/628 (56%), Gaps = 24/628 (3%)

Query: 60  KISEISEER---IVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT--LLFFYRKTEMLK 114
           +++ I+  R    V I G +   S   L+ RR     + D +G +    L FY   +   
Sbjct: 13  RVTPIAAARGGTAVQIEGEVVS-SEIMLRPRRQLVARIRDASGMLVARWLNFYPSQQ--- 68

Query: 115 NVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLF 171
                GR++ + G+++       MVHP     ++ D   PL +A   +Y    GL+    
Sbjct: 69  KQLAAGRRVRLFGEVRGGFFGDEMVHPRV---HAVDDGEPLPQALTPIYPTTAGLAQSAL 125

Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARER 227
           +K++  AL  +P L E++ + +L +   P+ A+A + +H+P    D     +   PA  R
Sbjct: 126 RKLVARALYAVP-LDEYLPEPVLAELRLPNFADAVHTLHHPPPDVDAAALEDRAHPAWRR 184

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           + ++ELL  Q++L       +      +   G++   +L  +PF  T +Q  A+  I  D
Sbjct: 185 IKFEELLVQQLSLRRAYNARRTHRAPALPATGRLCDALLTQLPFRLTGAQARAVAAIAHD 244

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           ++  + M R+LQGDVGSGKT+VA +AM  A E G QAV+MAP  ILA+QH+  +  + + 
Sbjct: 245 LAMPHPMQRLLQGDVGSGKTIVAALAMLQAAENGFQAVLMAPTEILAEQHWRKLGAWLEP 304

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + +  ++G+  +  R   L R+A G+  + +GTHAL +D +   +L L IVDEQHRFG
Sbjct: 305 LGVDIAWLSGSRKRRERDAELARLASGEVLLAVGTHALIEDPVLLPRLGLAIVDEQHRFG 364

Query: 408 VQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           V+QRL L  K      PH+L+M+ATPIPRTL ++   D+D++ + E P GR PI T ++ 
Sbjct: 365 VRQRLALRDKGADGQHPHMLMMSATPIPRTLAMSYYADLDVTVLDELPPGRTPILTKLVS 424

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHG 523
             R D+V+ R++     G +AYW+CP IEE +    ++ +E F +L        I ++HG
Sbjct: 425 DGRRDQVVARVRDACLAGCQAYWVCPLIEESEALQLKTALETFETLTAALPELRIGLVHG 484

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           R+   +K + M +F  G   LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRV
Sbjct: 485 RLKGEEKSATMAAFATGELHLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRV 544

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG   S CILL+  PLS+N   RL V+    DGF IA EDL  R  GE +G +QSG P 
Sbjct: 545 GRGTADSVCILLFTQPLSENGRARLKVIYEHSDGFAIAREDLHIRGPGEFVGARQSGTPL 604

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDP 671
              A  E    LLE AR  A+ +L + P
Sbjct: 605 LRYADLERDVDLLEPARTLAERLLDEAP 632


>gi|125717410|ref|YP_001034543.1| ATP-dependent DNA helicase RecG [Streptococcus sanguinis SK36]
 gi|125497327|gb|ABN43993.1| ATP-dependent DNA helicase recG, transcription-repair coupling
           factor, putative [Streptococcus sanguinis SK36]
          Length = 671

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 241/671 (35%), Positives = 384/671 (57%), Gaps = 30/671 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+       ET   DLL Y P  + D   +  + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGRVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184
             K K  +  +    +    +D     ++ VY L  G+S    V L K    + L  L  
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL++    S  EA   +H P+   D++    A  R+ ++EL   Q+ L +++
Sbjct: 167 LEENLPQPLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ K    G+ I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVG
Sbjct: 224 RETKAVSNGLKIDWQLDAVAEKKKSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A 
Sbjct: 284 SGKTVVAGLAMYAVYTAGYQSALMVPTEILAEQHFDSLTQLF--PELKLALLTGGMKTAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  I  GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P V
Sbjct: 342 RRETLSAIEKGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ +K  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWMKKELHKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G 
Sbjct: 462 QVYFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGR 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++   R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPD 672
            A  I T DP+
Sbjct: 641 VASQI-TADPN 650


>gi|331005600|ref|ZP_08328970.1| ATP-dependent DNA helicase RecG [gamma proteobacterium IMCC1989]
 gi|330420573|gb|EGG94869.1| ATP-dependent DNA helicase RecG [gamma proteobacterium IMCC1989]
          Length = 708

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 245/688 (35%), Positives = 372/688 (54%), Gaps = 30/688 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N +   ++  +GVG + +  L K+            D+LF+ P  + DR     I  +  
Sbjct: 10  NGILTSVTALKGVGAQLAKKLEKL------GIYTLQDMLFHLPRQYADRTRVTPIGSLQP 63

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            + V I   + + +     KRR     + D TG ++L  FY  +   +     G +I   
Sbjct: 64  NQSVVIEAEV-RGTDVVFGKRRSLICRVQDNTGTLSL-RFYHFSNAQRATLATGARIRCY 121

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSR-- 181
           G+ ++  + + + HP Y   +S   +  L E    +Y +  G++ +  + +I +AL+   
Sbjct: 122 GETRRGASGLELYHPEYQLLSSNAAHSGLEETLTPIYPITEGITQNRLRTLIKQALTHAK 181

Query: 182 -------LPVLPEWIEKDLLQKKSFP-SIAEAFNIIHNPRKAKDFE----WTSPARERLA 229
                  L +LP    ++     S P S+ E    +H P K  D         P ++ L 
Sbjct: 182 DFDFRGYLALLPADTPEESAPAISLPNSLFEPLAYLHAPPKNADLAQLLAGEHPYQQVLI 241

Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
            +EL A Q+ LL +R+Q +++  +P+ V+  +  + ++ + F+ T +Q+  ++DI QD+ 
Sbjct: 242 MEELTAYQLNLLRLREQRQQQAAVPLAVDKALEDQFIQALGFTLTNAQQRVVEDISQDLR 301

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
               M+R+LQGDVGSGKT+VA +A   A+    Q VIMAP  ILA+QH    +K+     
Sbjct: 302 LSIPMMRLLQGDVGSGKTVVAALAALHAIAHQQQVVIMAPTEILAEQHRLNFEKWFSPLG 361

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           I V  +TG      RR+ L  +  G   ++IGTHALFQDS+ + +L LVI+DEQHRFGV 
Sbjct: 362 ICVGSLTGKQKVKERREQLAALEQGVTQVVIGTHALFQDSVVFNRLALVIIDEQHRFGVH 421

Query: 410 QRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           QRL L  K       PH L+MTATPIPRTL +++  D+D S I E P GR P++TVII  
Sbjct: 422 QRLSLRNKGNKHTGIPHQLIMTATPIPRTLAMSAYADLDYSVIDELPKGRIPVETVIISQ 481

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524
            +  E+I+R+     +G++AYW+C  IE  +    ++  E    L     + ++ ++HGR
Sbjct: 482 QKRPEIIQRIDYACQQGRQAYWVCTLIENSEALEAQAAEEAATLLASTLPNLTVGLVHGR 541

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +   +KE VM  FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVG
Sbjct: 542 LKPPEKEQVMAQFKAGEIDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVG 601

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RG   S C+LLY   +S N   RL  +++T DGF IAE DL+ R  GE+LG +Q+G   F
Sbjct: 602 RGSIASHCVLLYGDKVSLNGKERLKAMRSTSDGFKIAEVDLQLRGPGEVLGTRQTGDIDF 661

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPD 672
            +A       L+      A+ I+T  P+
Sbjct: 662 ALADLRRDLYLMPKVNAYAQAIITHFPE 689


>gi|323141066|ref|ZP_08075971.1| ATP-dependent DNA helicase RecG [Phascolarctobacterium sp. YIT
           12067]
 gi|322414442|gb|EFY05256.1| ATP-dependent DNA helicase RecG [Phascolarctobacterium sp. YIT
           12067]
          Length = 686

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 250/703 (35%), Positives = 384/703 (54%), Gaps = 42/703 (5%)

Query: 12  PLSTFRGVGKKYSLFLS--KIINCGNANETRFIDLLFYHP--SSFIDRHYRPKISEI--- 64
           P++T +GVG K +  L+   I + G        DLL ++P   +++D      I E+   
Sbjct: 6   PVTTLKGVGVKKAAELAALNIFSVG--------DLLEFYPRQGAYLDYAKLKTIKELDVD 57

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF----YRKTEMLKNVFFEG 120
           + ++I   T Y  ++  +   +R    + + D TG  TL FF    Y+  ++  +   + 
Sbjct: 58  NSKQIFKATVYQVKNG-YGASRRSYTSVTVRDETGYATLYFFGGQRYKAQKLKPDTVLQ- 115

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               +TG++++ +    +           +   P I  VY+L   L+    +  I EAL 
Sbjct: 116 ----ITGRVRQGRTTKSVSEVDVQPLEQDEGKTPGIVPVYALSGNLTQKNLRTWISEAL- 170

Query: 181 RLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           RL    LPE +   ++ + + P    A   IH P   + +E    A++R  ++EL   Q 
Sbjct: 171 RLAAEDLPESLPAKVVSQCNLPDRYTALKNIHFP---ESWEALRRAKQRFVFEELFLLQC 227

Query: 239 ALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            LL  R+Q      GI    +G + + +++ +PF  T +Q+ A ++I  DM  K  M RI
Sbjct: 228 GLLYYRQQSHDNREGIKHAADGALVKDVMQGLPFELTAAQQQAWREISLDMQDKKPMHRI 287

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+++ +A+A AVE G Q  IM P  ILA QH+E +++Y Q   + + ++TG
Sbjct: 288 LQGDVGSGKTVISALALAKAVENGYQGCIMVPTEILAAQHFETLEQYLQPYGVRIALLTG 347

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            M    RR+ L  +  G   +++GTHAL ++ +++  L L + DEQHRFGV+QR +L+ K
Sbjct: 348 GMRAKARRELLLNLELGLVDVVVGTHALLEEDVRFANLSLTVTDEQHRFGVEQRARLSNK 407

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
            A AP VL+MTATPIPRTL LT  GD+DIS +  +P  RKP++T+     R  EV   L 
Sbjct: 408 SANAPDVLVMTATPIPRTLALTVYGDLDISVMKGRPPQRKPVRTLCYTDERRREVYAGLV 467

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVM 534
             +  G++AY +CP IEE       S    +  L   F   I  A++HGR+   +K+++M
Sbjct: 468 RQVQAGRQAYVVCPLIEESDVLAVHSAQRVYEELKRDFLQDIPCALLHGRLKGAEKDAIM 527

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            SF  G  K+L++TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG E S C+L
Sbjct: 528 SSFAAGELKVLVSTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGSEQSYCVL 587

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           L     S  +  RL+VL  +EDGF +AE+D++QR  G++ G+KQ G+P   IA       
Sbjct: 588 LTAAD-SPEALARLNVLHESEDGFYLAEKDMEQRGAGQLFGLKQHGLPDLRIADIMRDVD 646

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
           ++   R+ A+  L    D   +R       L   Q+ E F  I
Sbjct: 647 VIAQVRQLAQAQLRTPEDWAEIR------RLVEMQFGERFNMI 683


>gi|168493601|ref|ZP_02717744.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           CDC3059-06]
 gi|183576417|gb|EDT96945.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           CDC3059-06]
          Length = 671

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 244/678 (35%), Positives = 386/678 (56%), Gaps = 30/678 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIGQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPDLTSV 676
            +I +     +DP+   +
Sbjct: 643 SYISSIEAWQEDPEWCMI 660


>gi|15677628|ref|NP_274787.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis MC58]
 gi|7227042|gb|AAF42127.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis MC58]
 gi|316984386|gb|EFV63359.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis H44/76]
 gi|325139672|gb|EGC62210.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis CU385]
 gi|325200852|gb|ADY96307.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis H44/76]
          Length = 680

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662


>gi|194396798|ref|YP_002038308.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae G54]
 gi|194356465|gb|ACF54913.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae G54]
          Length = 671

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 244/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEAWQEDPE 656


>gi|145589967|ref|YP_001156564.1| ATP-dependent DNA helicase RecG [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048373|gb|ABP35000.1| ATP-dependent DNA helicase RecG [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 671

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 244/615 (39%), Positives = 352/615 (57%), Gaps = 37/615 (6%)

Query: 87  RRPYKILLNDGTGEITLLF--FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
           RR   + + D T  + L F  FY   +    V   G  I V G++++      MVHP  +
Sbjct: 48  RRQMVVTIEDETETLNLRFLNFYPSQQKQMAV---GSHIRVRGEVREGFQGSEMVHP-TV 103

Query: 145 FHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVL--------PEWIEKDLLQ 195
              S D   P  +  VY    G+S    +K +  AL R P L        P  +  +LL 
Sbjct: 104 KAVSSDTPLPASLTPVYPATAGVSQAAIRKAVNLAL-RDPSLQESLAEFFPHQLMSELLP 162

Query: 196 KKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIAL----LLMRKQ- 246
              +P++ EA   +H P    +     E T PA  R+ ++ELLA QI+L     + R + 
Sbjct: 163 SYDWPNLMEAITYLHQPPADANTQALLERTHPAWRRVQFEELLAQQISLKRAHAIRRGRQ 222

Query: 247 ---FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
              F KEI   + +E  +    L  +PF  T +Q     +I  D++Q   M R+LQGDVG
Sbjct: 223 APTFSKEIKKGLGIEAGL----LAVLPFKLTAAQARVWLEIGHDLAQAFPMNRLLQGDVG 278

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A A  ++ G QA +MAP  ILA+QHY  +K++ +   + +  +TG++    
Sbjct: 279 SGKTVVAALAAAHVMDQGYQAAVMAPTEILAEQHYLKMKEWFEPLGVKIAWLTGSLKAKE 338

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP-- 421
           +R A E I  GQA +IIGTHAL Q+S+++ KL L ++DEQHRFGV+QRL++ Q+  +   
Sbjct: 339 KRLAQEMIESGQAQLIIGTHALIQESVRFAKLGLAVIDEQHRFGVRQRLEIQQRVGSELF 398

Query: 422 --HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
             H L+M+ATPIPRTL +T   D+D+S I E P GRKPI T ++  +R +EVI  L   L
Sbjct: 399 YCHQLMMSATPIPRTLAMTYYADLDVSVIDELPPGRKPITTKVVKASRREEVISGLHSWL 458

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           ++G +AYW+CP IEE +    ++ VE F  L +      + ++HGR+   +K +VM +FK
Sbjct: 459 AKGLQAYWVCPLIEESEVLQLQTAVESFEQLTQALPGFKVGLVHGRLKSDEKAAVMAAFK 518

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               +LL+ATTVIEVG+DV +A++++IE+AE FG AQ+HQLRGRVGRG   S CIL+Y  
Sbjct: 519 ANEIQLLVATTVIEVGVDVPNAALMVIEHAERFGYAQIHQLRGRVGRGSADSVCILMYAE 578

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS  +  RL  L+ T DGF+IAE DL  R  GE+LG KQSG         +    L+E+
Sbjct: 579 PLSMAAKERLQTLRETSDGFVIAERDLSLRGPGELLGAKQSGDAMLRFVDLQRDAWLIEL 638

Query: 659 ARKDAKHILTQDPDL 673
           A+K A  +L    +L
Sbjct: 639 AQKAADRLLADHREL 653


>gi|325133693|gb|EGC56350.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M13399]
 gi|325143874|gb|EGC66189.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M01-240013]
          Length = 680

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662


>gi|254493027|ref|ZP_05106198.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 1291]
 gi|226512067|gb|EEH61412.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 1291]
          Length = 680

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 227/600 (37%), Positives = 340/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYAGHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LRGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +M P  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMTPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662


>gi|257095000|ref|YP_003168641.1| ATP-dependent DNA helicase RecG [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047524|gb|ACV36712.1| ATP-dependent DNA helicase RecG [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 691

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 231/605 (38%), Positives = 352/605 (58%), Gaps = 21/605 (3%)

Query: 87  RRPYKILLNDGTGEITLLF-----FY-RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
           RR     ++D  GE + LF     FY  +   L+     GR++ + G+I+       MVH
Sbjct: 70  RRQLVARVSDAGGEGSTLFLRFLSFYGSQKSGLEAARDAGRRLRIFGEIRDGFLGREMVH 129

Query: 141 PHYIF------HNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192
           P Y F          DV+   P +  VY    GL+    +++I  AL    +  E +   
Sbjct: 130 PRYRFLSDDENGGESDVDALPPSLTPVYPSTAGLAQGTLRRLIARALRAADLA-ELLADG 188

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIALLLMRKQFK 248
             ++ + PS+  A   +H+P  A D         PA  R+ +DELLA Q+AL  +    +
Sbjct: 189 WREQHALPSLPAAVAFLHSPPPAVDESALQARAHPAWRRIKFDELLAQQLALRRLSLARR 248

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           ++    + V G++A+++   +PF+ T +Q     +I  D+ Q + M R+LQGDVG GKT+
Sbjct: 249 RQGAPVLAVAGELARRLQAALPFALTGAQRRVAAEIATDLEQAHPMQRLLQGDVGCGKTI 308

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA +A   A+EAG Q   MAP  ILA+QHY  ++ + +   I V  + G++    R+   
Sbjct: 309 VAALAACQAIEAGYQTAFMAPTEILAEQHYSKLRAWLEPLGIEVSWLAGSLGGKARQAKR 368

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           +++A   A +++GTHAL Q+SI + +L L IVDEQHRFGV QRL+L +K   PH L+M+A
Sbjct: 369 QQVAT-SAQLVVGTHALIQESIDFARLGLAIVDEQHRFGVVQRLELRRKGVNPHQLMMSA 427

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL ++   D+D+S I E P GR P+KT +    R  EVI  ++ V++ G++AYW+
Sbjct: 428 TPIPRTLAMSYYADLDVSVIDELPPGRSPVKTRLFSDTRRAEVIAAVRAVVAGGRQAYWV 487

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           CP +EE  +   ++ ++ + +L    +   + ++HGR+   +K SVM +F  G   +L+A
Sbjct: 488 CPLVEESAKLELQAALDTWAALTAELSDLRVGLVHGRLKGDEKASVMAAFVAGEIDVLVA 547

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG E S C+LLY  PLS+ +  R
Sbjct: 548 TTVIEVGVDVANASLMVIEHAERFGLSQLHQLRGRVGRGAEESVCVLLYQQPLSRTARAR 607

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L ++    DGF IA +DL+ R  GE +G +QSG+P    A  E    L+E+A++ A   L
Sbjct: 608 LKIIFEHTDGFEIARQDLRLRGPGEFIGSRQSGVPLLRYADLESDADLVELAQQMAVQWL 667

Query: 668 TQDPD 672
             DP+
Sbjct: 668 RNDPE 672


>gi|315613614|ref|ZP_07888521.1| DNA helicase RecG [Streptococcus sanguinis ATCC 49296]
 gi|315314305|gb|EFU62350.1| DNA helicase RecG [Streptococcus sanguinis ATCC 49296]
          Length = 671

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 243/674 (36%), Positives = 382/674 (56%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  N+PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKENLPFALTQAQEKSLQEILADMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    + ++   ++TG++    +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPDLKLA--LLTGSLKAVEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKEQKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P     
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPKTDSG 583

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
            Y R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 584 KY-RMRIMTETTNGFILAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKIA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEDWQEDPE 656


>gi|78184817|ref|YP_377252.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9902]
 gi|78169111|gb|ABB26208.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9902]
          Length = 850

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 245/707 (34%), Positives = 394/707 (55%), Gaps = 51/707 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  +GVG K +  L+ +      +  R      ++P   +D     +I  +    
Sbjct: 151 LESPITRIKGVGPKLASRLASLNLLLVKDLLR------HYPRDHVDYSAMRRIEALVAGE 204

Query: 69  IVTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK-- 122
             TI   I + + F +  R P     ++ L D TG + +  F          + +G++  
Sbjct: 205 TATIVATIRRCNGF-VSPRNPNLAILELQLQDPTGRLKVTRFLAGKRFSSQAYLKGQQRL 263

Query: 123 ------ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA-------VYSLPTGLSVD 169
                 + V+G +K     +    P  +    ++   P+  A       VY+L  G+  D
Sbjct: 264 YPAGASVAVSGLVKDGAYGLSFQDP--LIEVLENPTSPVKSASIGRLLPVYALTEGVGAD 321

Query: 170 LFKKIIVEALSRLPVLPEWIE---KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226
            F+ +I + L   P+  +WIE   + L +     S++EA   +H P   KD       R 
Sbjct: 322 RFRSLIEQVL---PLTEQWIEPLPEPLRKTFGLLSVSEALKALHAP---KDRTTLDRGRH 375

Query: 227 RLAYDELLAGQIALLL----MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
           RL +DE L  Q+ LL     +R +   E+G+  + +G + Q     + F  T +Q+  ++
Sbjct: 376 RLVFDEFLLLQLGLLRRRQALRSRPGPELGLLPSSQG-LVQDFKDLLSFQFTDAQQRVLR 434

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I  D++Q   M R++QGDVGSGKT+VA+ A+ + + +G Q  +MAP  +LA+QH+  + 
Sbjct: 435 EIEADLAQSKPMARLVQGDVGSGKTVVAIAALLSTIASGWQGALMAPTEVLAEQHHRNLC 494

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
            +     I VE++TG+ P+  RR+ L+ +A G   +++GTHAL +D + + +L LV+VDE
Sbjct: 495 HWFPQLHITVELLTGSTPRPRRRQLLDDLASGSLKLLVGTHALLEDPVVFERLGLVVVDE 554

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           QHRFGV QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PIKT +
Sbjct: 555 QHRFGVHQRDRLLNKGLQPHLLTMTATPIPRTLALSVHGDLDVSQIDELPPGRTPIKTAM 614

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTS-SIAI 520
           +   + ++    ++  +S+G++AY + P +EE ++   RS VE    L  E F    + +
Sbjct: 615 LSAGQREKAYALIRDEVSKGQRAYVVLPLVEESEKLELRSAVEVHAELVSEVFPDLQVGL 674

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGR+S ++K+ V+ SF +G C++L++TTV+EVG+DV +AS+++I++AE FGLAQLHQLR
Sbjct: 675 LHGRLSSVEKQEVLSSFSSGACQVLVSTTVVEVGVDVPEASVMMIDHAERFGLAQLHQLR 734

Query: 581 GRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           GRVGRG   S C+L+     PL++    RL VL  + DGF IAE DL+ R  G++LG +Q
Sbjct: 735 GRVGRGAAASHCLLINGSSNPLARQ---RLDVLVRSTDGFEIAEMDLRLRGPGQVLGTRQ 791

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           SG+P   +A      ++LE AR  A+ +L  DP+L   R   +R LL
Sbjct: 792 SGLPDLALASLADDAAVLEDARTAAQDLLRDDPNLE--RCPKLRALL 836


>gi|33861313|ref|NP_892874.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633890|emb|CAE19215.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 818

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 231/651 (35%), Positives = 370/651 (56%), Gaps = 27/651 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99
           D++ Y P +++D   R KI  +  + + T    + +   ++        I+   + D T 
Sbjct: 151 DIINYFPRTYLDYTNRVKIINLKPDNLYTCIATVKKFYIYKSSNNSNLSIMNIVIFDETS 210

Query: 100 EITLLFFYRKTEMLKNVFFE--------GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151
            I +  F+         FF         G K+ ++GK+K  +     V P     N+ + 
Sbjct: 211 SIKVTKFFLGKRFRSYSFFSSQKSLYIPGTKLAISGKVKLSEYGKNFVDPQIEILNTNEE 270

Query: 152 NFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
           +F     I  +YSL    S   F ++I   +      P+ + +  L   S  S +++   
Sbjct: 271 SFNFSGKIMPLYSLSESFSNLSFIRLIKRVIIYSKQYPDILNQKQLNFLSLVSKSDSLIN 330

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-IAQKILR 267
           IH P           +++RL +DEL   Q+  LL +++  K++ I  +++   + +  L 
Sbjct: 331 IHLPVNQNAL---IESKKRLVFDELFLLQMKFLLRKRKNNKKLTIQKSIKKNFLLKDFLN 387

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +PF  TKSQE  + +I  D+S    M R+LQGDVGSGKT++A+  +   +E   Q  +M
Sbjct: 388 KVPFQLTKSQEKVLDEIKSDLSDLTPMSRLLQGDVGSGKTIIAIATLLIELEKDQQGALM 447

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA QHY+ + ++     + VE++TGN PQ  R++ L  + +G   I++GTHALF+
Sbjct: 448 VPTEVLATQHYKNLIQFLNPLLVSVELLTGNTPQKKRKEILTNLKNGMVDILVGTHALFE 507

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D + +  L +V++DEQHRFGV QR +L  K    ++L MTATPIPRTL L+  GD+DIS+
Sbjct: 508 DKVVFNSLGMVVIDEQHRFGVTQRNRLLNKGDNTNLLSMTATPIPRTLALSLYGDLDISQ 567

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           ITE P GR PI T II    ++++ +R++  + +GK+AY I P IE+ ++ N  S  + +
Sbjct: 568 ITELPPGRVPITTKIISEEELNKLFKRVENEIDKGKQAYVILPLIEDSEKMNLSSAKKIY 627

Query: 508 NSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             L E     + + ++HG+++  +K +V++SF N    +L++TTVIEVGIDV +ASI+II
Sbjct: 628 QYLSEEIFLKNKVGLLHGKLNSEEKNNVINSFVNNEVNILVSTTVIEVGIDVPNASIMII 687

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS---YTRLSVLKNTEDGFLIAE 622
            N+E FGL+QLHQLRGRVGRG + S C L+     S+N+     RL VL+ + DGF IAE
Sbjct: 688 YNSERFGLSQLHQLRGRVGRGSQKSFCYLV----TSENNGLENKRLRVLEKSNDGFYIAE 743

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           +DL+ R  G++LG KQSG+P F++     +  L+E AR++A+ +L +DPDL
Sbjct: 744 KDLELRGPGQLLGYKQSGLPDFVLDNLPNNKVLIEKAREEAQRVLKEDPDL 794


>gi|218767626|ref|YP_002342138.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis Z2491]
 gi|121051634|emb|CAM07935.1| putative DNA helicase [Neisseria meningitidis Z2491]
 gi|319409884|emb|CBY90199.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis WUE 2594]
          Length = 680

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAIGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662


>gi|194334659|ref|YP_002016519.1| ATP-dependent DNA helicase RecG [Prosthecochloris aestuarii DSM
           271]
 gi|194312477|gb|ACF46872.1| ATP-dependent DNA helicase RecG [Prosthecochloris aestuarii DSM
           271]
          Length = 712

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 242/721 (33%), Positives = 383/721 (53%), Gaps = 40/721 (5%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +N    PL+  +GVG + +    +++        R  DL  Y P  ++DR     I  ++
Sbjct: 6   MNSDSTPLTFVKGVGPEKA----RVLEAEGLGSVR--DLYEYFPRRYLDRSRLKSIGSLA 59

Query: 66  EERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           E  +VT+ G +S+    +    +  +++ L+DGTG + L +F R       +   G  + 
Sbjct: 60  EGELVTVVGTVSRAEKERSSSGKALFRVWLSDGTGNLVLTWF-RGAVYFSKMVRPGDLLA 118

Query: 125 VTGKIKKLKNRIIMVHPHY-------------------IFHNSQDVN-FPLIEAVYSLPT 164
           V GK+        M HP +                   +FH    +  +P+ +A+     
Sbjct: 119 VHGKVGFFCGHAQMQHPDFDRLQDASAESGAKGVSDADLFHTGGIIPLYPVTDAMKK--A 176

Query: 165 GLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP 223
           GL     + II+ A+   P  + E +   ++       I  A+  IH P  ++  E    
Sbjct: 177 GLDSRRLRAIILRAMESHPAFIDEHLPDSIIASHGLLEINLAYRQIHCPVSSEMLE---R 233

Query: 224 ARERLAYDELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
           A  R  ++EL   Q+   L    Q K    +     G     +   +PFS T +Q+ A++
Sbjct: 234 AVHRFKWNELFYAQLFFALRYHAQKKNNAAVRFERSGDKTALLYSLLPFSMTDAQKQAVR 293

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I +D+   ++M R+LQGDVGSGKTLVA+ +MA AV+ G QA IMAP  ILA QH+  I+
Sbjct: 294 EIYRDLRSGSQMNRLLQGDVGSGKTLVAMFSMALAVDNGLQAAIMAPTEILAFQHWLGIR 353

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           KY +   + V ++TG+  +  R   L  +  G   + +GTHA+ ++ +++ +L L+I+DE
Sbjct: 354 KYCEPLGLRVGLLTGSQKKKERDVILSGLEDGSYDLAVGTHAMIEERVRFKRLGLIIIDE 413

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           QHRFGV QR  L  K+  PHVLLMTATPIPRTL + + GD+D++ I E P GRK I T +
Sbjct: 414 QHRFGVLQRKALQDKSVNPHVLLMTATPIPRTLCMGAFGDLDVTLIDELPGGRKAIVTRL 473

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAI 520
              N    V+E ++  ++ G++AY + P ++E ++ + ++  + +  L +       I +
Sbjct: 474 CHENSKPRVLELIRKEVAAGRQAYIVYPLVDESEKIDLKAATDSYLQLQKDLLPELRIGL 533

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGRM   +KE +MD F+ G   +L+ TTVIEVG+DV +A++++IE+AE FGLAQLHQLR
Sbjct: 534 VHGRMKPAEKELIMDRFRQGDVDVLVGTTVIEVGVDVPNATVMVIEHAERFGLAQLHQLR 593

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG E S C LLY   L  ++  RL  ++ + DGF ++E D + R  G +LG +QSG
Sbjct: 594 GRVGRGPEQSYCYLLY-SRLGGDAAERLRAMEASTDGFRLSEIDARIRGTGNVLGKEQSG 652

Query: 641 M-PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           M   F +A       +L++AR  A  ++  DP L +   + IR   Y   Y+E F     
Sbjct: 653 MVSGFSMADLNRDSEILDVARDAAFRLVDDDPQLRNPLHRGIRN-YYTTHYHEKFSLADI 711

Query: 700 G 700
           G
Sbjct: 712 G 712


>gi|289523456|ref|ZP_06440310.1| ATP-dependent DNA helicase RecG [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503148|gb|EFD24312.1| ATP-dependent DNA helicase RecG [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 696

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 249/671 (37%), Positives = 379/671 (56%), Gaps = 30/671 (4%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE-------R 68
            +GVG K +  LSK+       ET   DLL++ P  + DR     I  +  +       R
Sbjct: 19  LKGVGPKRASLLSKL-----GVET-VEDLLYFFPRRYEDRRQITPIKSLEPDSYAALLVR 72

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           +V +   I++  +  L         + DGT     L+F ++   L+N+   G  + + GK
Sbjct: 73  VVGVEKKITKKRNLNLTV-----ATVTDGTDIAQALWFNKRG--LENLLSIGTLVALFGK 125

Query: 129 IKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL 185
           IK+    + +++P +  I  ++       I  +Y L  GLS    + +I   LS  L  +
Sbjct: 126 IKENYGMLQILNPEFEIIEEDALPEEMGKIVPIYPLTEGLSQRWLRLLIRRTLSEYLSYV 185

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E++ +D++ +  FP + +A    H P   +   W S  R+RLA+DEL   Q+ + + R+
Sbjct: 186 EEFLPEDIVLRYGFPPLKKAILGYHYPDDERG--WKS-CRKRLAFDELFLLQLGVAIKRR 242

Query: 246 QFKKEIGIP-INVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           Q ++E   P ++  G +  K + N + F  T +QE  + DI  D+ +K  M R+LQGDVG
Sbjct: 243 QMEEETSAPKLSCGGPLQMKFVENCLNFKLTSAQEMVLGDICVDIFRKIPMNRLLQGDVG 302

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A++AM AAV+ G QA +M P  +LA QHY  I  +       V ++T ++    
Sbjct: 303 SGKTVIAVLAMLAAVDTGYQAAMMVPTEVLANQHYAKITNWLSKLNAEVTLLTSSLTPQE 362

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           R K  E I  G++ I+IGTH+L Q+ +++ +L LV++DEQHRFGV QR  L  K + PH 
Sbjct: 363 RAKRYEDIKSGRSRIVIGTHSLIQEGVEFRELGLVVIDEQHRFGVLQRRTLMDKGSYPHT 422

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL LT  GD+ +S I E P GR P++T  I   ++ E+ E +K  L  G 
Sbjct: 423 LVMTATPIPRTLALTVYGDLSLSIIDELPPGRTPVRTQWIGKGKLKELYEFVKKKLLAGN 482

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + YW+CP I+E +  +  SV +R+ SL E F+   + ++HGR+   DK+    +F  G  
Sbjct: 483 QVYWVCPLIDESESIDATSVQKRYRSLCEIFSDFKVGLLHGRLGAPDKDETYRAFLRGDL 542

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT+VIEVGIDV  A+I++IE+A  FGL+QLHQLRGRVGRG     C LL   P + 
Sbjct: 543 DILVATSVIEVGIDVARANIMVIEDAYRFGLSQLHQLRGRVGRGGGQGYCFLLGEAP-TP 601

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  R  V+ +T DGF+IAEEDLK R  G   G++Q G+  F +A       LL+IAR++
Sbjct: 602 EARKRFKVMCSTSDGFVIAEEDLKLRGPGAFCGVRQHGITDFRVADLVNDVDLLDIAREE 661

Query: 663 AKHILTQDPDL 673
           A+ ++  DP L
Sbjct: 662 AQVLVENDPSL 672


>gi|284037365|ref|YP_003387295.1| ATP-dependent DNA helicase RecG [Spirosoma linguale DSM 74]
 gi|283816658|gb|ADB38496.1| ATP-dependent DNA helicase RecG [Spirosoma linguale DSM 74]
          Length = 702

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 247/691 (35%), Positives = 380/691 (54%), Gaps = 37/691 (5%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           R +F +    PL+  +G+G + +  L+K +N        + DL+ Y+P  + DR     I
Sbjct: 4   RATFFD---TPLAYLKGLGPQRTELLNKELNLFT-----YGDLIQYYPFRYDDRSRYYTI 55

Query: 62  SEISEER-IVTITGYISQHSSFQLQKRRPYKILL---NDGTGEITLLFFYRKTEMLKNVF 117
           SE+ +      I G +     + L+   P K L+   +DGTG ++L++F   T + K + 
Sbjct: 56  SELMDSMPSAQIRGRLR---DWYLEGEGPKKRLVATFSDGTGSMSLVWFQGITFIEKTLR 112

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
            EG  I   GK +    +  +VHP     N+   N P    VY+L   L        ++ 
Sbjct: 113 REGEYIAY-GKPQSFNGQFSIVHPELENANAASENEPGFFPVYNLTDKLRKRHLDSKVLG 171

Query: 178 ALSRLPVLPEW------IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
              R+ +   W      +   L+Q+       EA   IH P+      W   A+ RL ++
Sbjct: 172 KAMRVLLEQSWTHIRETLPDSLIQQYRLIGKREAMWNIHLPQNQG---WLKQAQRRLKFE 228

Query: 232 ELLAGQIAL----LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           EL   Q+ L    LL +++F  ++    ++      ++L   PF  T +Q+  IK+I  D
Sbjct: 229 ELFYNQLRLIKNKLLQKEEFPGQVFRDTSLMKHFYNELL---PFELTGAQQRVIKEIYAD 285

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
                +M R+LQGDVGSGKT+VA I    A+  G QA +MAP  ILA QHY  +K +   
Sbjct: 286 FLSGKQMNRLLQGDVGSGKTIVAFITCLIAIGNGAQACLMAPTEILADQHYNGLKPFADA 345

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + + I+TG+  +  R    E +  G+ HI++GTHAL +D++QY  L L I+DEQHRFG
Sbjct: 346 MGLNLGILTGSTNKKRRVVLHEELQSGKMHILVGTHALLEDAVQYKNLGLCIIDEQHRFG 405

Query: 408 VQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           V QR KL +K     PH+L+MTATPIPRTL +T  G++D+S I E P GRKPIKTV    
Sbjct: 406 VAQRAKLWRKNETVPPHILVMTATPIPRTLAMTLYGNLDVSTIDELPKGRKPIKTVHKYD 465

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIH 522
               EV   ++  +  G++ Y + P IEE ++ +++ +++ F S+   F   T  I ++H
Sbjct: 466 KHRSEVFGFIRQQIELGRQVYVVYPLIEESEKLDYKDLMDGFESMQRAFPRPTYEIGMLH 525

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M   +K+  M  F     ++L+ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGR
Sbjct: 526 GKMLPYEKDDEMKRFLKKETQILVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGR 585

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG + S CI++    LS ++ TRL  +  T +GF IA+ DL+ R  G++ G +QSG+ 
Sbjct: 586 VGRGADQSYCIMMTGYKLSTDTRTRLETMVRTNNGFEIADVDLQLRGPGDLTGTQQSGVM 645

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             +IA      ++L  AR+ A+ IL +DP+L
Sbjct: 646 DLMIADLAKDGAILSAARESAQAILAEDPEL 676


>gi|14572554|gb|AAK64611.1| RecG [Burkholderia cepacia]
          Length = 655

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/612 (37%), Positives = 350/612 (57%), Gaps = 27/612 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI-SQHSSFQLQKRRPYKILLNDG 97
           TR IDL+ + P  + D      I E+    I    G +     +++ +++   KI  +DG
Sbjct: 47  TRSIDLVLHLPMRYEDETTLTPIDELLPGGIAQTEGVVFDNEVAYRPRRQLVVKIRDDDG 106

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LI 156
             ++ L F       +K +   G+++ V G ++     + MVHP      + D   P ++
Sbjct: 107 -AQLVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGMEMVHPAVRVVEA-DAPLPQVL 163

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
             VY    G+S    +K I  A+ R P+   LP  IE+D L+    P++A+A  I+H+P 
Sbjct: 164 TPVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIERDYLKPLGVPTLAQAVRILHHPG 223

Query: 214 KAKD----FEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIP---INVEGKIAQK 264
              D     + + PA  R+ ++ELLA Q++L      ++ +    +P    +  G +  +
Sbjct: 224 VDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRSAPAMPRRAADDAGSLTTR 283

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +   +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT+VA +A   A++AG QA
Sbjct: 284 LYAALPFTLTGAQSRVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAATQAIDAGYQA 343

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTHA
Sbjct: 344 ALMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQLVIGTHA 403

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTL 435
           + QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL
Sbjct: 404 IIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARDFQPHQLMMSATPIPRTL 463

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +T   D+++S I E P GR P+ T ++   R  EVI R++     G++ YW+CP IEE 
Sbjct: 464 AMTYYADLEVSTIDELPPGRTPVLTRLVADARRGEVIARVREAALTGRQVYWVCPLIEES 523

Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           +    ++ VE + +L        + ++HGR+S  DK +VMD+F     +LL+ATTVIEVG
Sbjct: 524 ETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAFTRNDVQLLVATTVIEVG 583

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL  ++ T
Sbjct: 584 VDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYSGPLSLAGRERLKTMRET 643

Query: 615 EDGFLIAEEDLK 626
            DGF IA  DL+
Sbjct: 644 TDGFEIARRDLE 655


>gi|224824830|ref|ZP_03697937.1| ATP-dependent DNA helicase RecG [Lutiella nitroferrum 2002]
 gi|224603323|gb|EEG09499.1| ATP-dependent DNA helicase RecG [Lutiella nitroferrum 2002]
          Length = 682

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 239/643 (37%), Positives = 367/643 (57%), Gaps = 18/643 (2%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           R  DL+ + P  + D  +   I++    + V + G +  H   Q + R+   + L D +G
Sbjct: 29  RRFDLVLHLPLRYEDETHLYPIAQAPYGQAVLVEGEVVAHE-VQYRPRKQLLVQLEDKSG 87

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
            + L F +     LK    +G+++   G++++      MVHP        D     +  V
Sbjct: 88  TLMLRFIHFYPNHLKQ-LAQGQRVRALGEVRRGFRGDEMVHPKIREVLEGDPLADSLTPV 146

Query: 160 YSLPTGLSVDLFKKII---VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
           Y    GL+  + +++I   ++A S    LPE +     +       A++  ++H P    
Sbjct: 147 YPTVNGLTQPVLRRLIHAELKAQSLSDTLPEAVR----EHHGLVPFADSIRLLHAP--TP 200

Query: 217 DFEWTS------PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
           ++  T       PA +RL +DELLA Q+++ L  +  ++     I  +G++   +  ++P
Sbjct: 201 EYSATQLADPALPAWQRLKFDELLAQQLSMRLAYRARRRGKAPVIAGDGRLRAALSDSLP 260

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F+ T +Q+  + +I  D++Q + M R+LQGDVGSGKT+VA ++  AA+EAG Q  +MAP 
Sbjct: 261 FALTAAQQKVLGEITADLAQPHPMHRLLQGDVGSGKTVVAALSALAAIEAGFQVALMAPT 320

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA+QHY  +  +     I V  ++G++ +  +  ALE++A GQA ++IGTHALFQD +
Sbjct: 321 EILAEQHYLKLAAWLAPLGIEVAWLSGSLRKKQKTAALEQVASGQARLVIGTHALFQDEV 380

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L IVDEQHRFGV QRL L  K   PH L+M+ATPIPRTL ++   D+D+S I E
Sbjct: 381 VFDNLGLSIVDEQHRFGVGQRLALQGKGGEPHQLMMSATPIPRTLAMSFYADLDVSVIDE 440

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P GR PI T +I   R DEV+  +    S G++AYW+CP IEE +    ++ V+    L
Sbjct: 441 LPPGRTPIVTKLINSARRDEVVAYVDRTCSGGQQAYWVCPLIEESETLQLQTAVDTHAQL 500

Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            E      + ++HGRM   +K +VM +F     ++L+ATTVIEVG+DV +AS+++IE+AE
Sbjct: 501 AEDLPQWGVGLVHGRMKPAEKAAVMAAFAANELQVLVATTVIEVGVDVPNASLMVIEHAE 560

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
             GLAQLHQLRGRVGRG   S+C+L++  PLS+ +  RL V+    DGF IA +DL  R 
Sbjct: 561 RMGLAQLHQLRGRVGRGAAKSACVLMFDTPLSELAKARLKVIYENTDGFEIARQDLNIRG 620

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            GE LG +QSG+P    A  E    LLE A++ A  +L + P+
Sbjct: 621 PGEFLGARQSGLPMLRFADLEQDIELLEAAKELAPELLKRWPN 663


>gi|221232431|ref|YP_002511584.1| ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC 700669]
 gi|225855125|ref|YP_002736637.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae JJA]
 gi|298229863|ref|ZP_06963544.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255737|ref|ZP_06979323.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503441|ref|YP_003725381.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           TCH8431/19A]
 gi|220674892|emb|CAR69467.1| ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC 700669]
 gi|225723598|gb|ACO19451.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae JJA]
 gi|298239036|gb|ADI70167.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           TCH8431/19A]
 gi|332199722|gb|EGJ13797.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA41317]
          Length = 671

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 243/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++ G++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLIGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLALIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEAWQEDPE 656


>gi|154249701|ref|YP_001410526.1| ATP-dependent DNA helicase RecG [Fervidobacterium nodosum Rt17-B1]
 gi|154153637|gb|ABS60869.1| ATP-dependent DNA helicase RecG [Fervidobacterium nodosum Rt17-B1]
          Length = 776

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 251/664 (37%), Positives = 368/664 (55%), Gaps = 17/664 (2%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL  P+   +GVG      L K+       ET   DL+ Y P  + DR     I  I E 
Sbjct: 100 PLDTPIKYAKGVGPSREKLLKKL-----GIET-IGDLINYFPRDYEDRRKIIPIVFIREN 153

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             VT  G I      +         LL DG  ++ L +F ++ + L+      +++ V+G
Sbjct: 154 EKVTTKGIIKSVEKIKKGDLVIISALLQDGISQVVLKWFNQEFKELELKQLINKEVYVSG 213

Query: 128 KIKK-LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
             K+     I + +P     NS +     I  +Y L   L+    +KII + +S +    
Sbjct: 214 TPKRGFFGAIEIQNPEISLSNSPERE---IIPIYPLTENLTQKTLRKIIEDNISAVCNYQ 270

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + I  ++++ +    I  A+  +H PR +  F     +R+RLAY+ELL  Q+AL + RK 
Sbjct: 271 DVIPNEIVEIRKLLDIKRAYIGMHFPRSS--FH-QKLSRKRLAYEELLLFQLALFISRKN 327

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            +K  GI   + G++A+K + ++PF  T +Q  A  +I QD+   N M R+LQGDVGSGK
Sbjct: 328 VEKIGGIAKQLSGQLAEKFVNSLPFKLTNAQIRAHNEIRQDLMSPNPMNRLLQGDVGSGK 387

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVA +A+    EAG Q+ +M P  ILA QHY+ I  +  N  I V ++ G+  Q  + K
Sbjct: 388 TLVAELAIIDNYEAGFQSALMVPTSILAIQHYQKIFNHLTNLGIRVALLIGSTSQKEKDK 447

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
               + +G   +IIGTHAL Q+ + +  L LVI+DEQHRFGV+QR +L  K      L+M
Sbjct: 448 IKFALKNGDLDVIIGTHALIQEDVHFANLGLVIIDEQHRFGVKQREELISKGKVVDTLIM 507

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEGKKA 485
           TATPIPRTL LT  GD+D+S I E P GRK IKT  +   R  EV + +K  ++  G +A
Sbjct: 508 TATPIPRTLSLTLYGDLDVSIIDEMPPGRKEIKTFTLKHTRAKEVYKFVKDQIIENGDQA 567

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543
           Y + P IE+  + N ++  + +  L +   + I   ++HGRMSD +K  VM  F  G  K
Sbjct: 568 YIVYPLIEQSDQINAKAAEDMYEKLSKEAFADIPMGLLHGRMSDFEKNEVMSKFVKGEIK 627

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++T+VIEVG+DV +A+I++IENAE FGLAQLHQLRGRVGRG + S C L+      + 
Sbjct: 628 ILVSTSVIEVGVDVPNATIMVIENAERFGLAQLHQLRGRVGRGSKQSYCFLIVSEA-GEE 686

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           ++ RL    +T DGF +AE D++ R  GE  G +Q GM  F +A       L+ +AR+DA
Sbjct: 687 AWDRLQFFASTTDGFKVAEYDMRLRGPGEFFGTRQHGMMDFKVADLISDSELIMLAREDA 746

Query: 664 KHIL 667
           K I+
Sbjct: 747 KWII 750


>gi|78186238|ref|YP_374281.1| ATP-dependent DNA helicase RecG [Chlorobium luteolum DSM 273]
 gi|78166140|gb|ABB23238.1| ATP-dependent DNA helicase RecG [Chlorobium luteolum DSM 273]
          Length = 703

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 241/704 (34%), Positives = 385/704 (54%), Gaps = 39/704 (5%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           +PLS+ +G+G K      K+    +A    F DL    P  ++DR     + ++      
Sbjct: 5   SPLSSLKGMGPK------KVAILHDAGLVSFEDLFELFPRRYLDRRVMKPVRDLRAGETA 58

Query: 71  TITGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           T+ G I+  S    Q+ R  ++  L+DG+G + L +F R           G  + V GK+
Sbjct: 59  TVVGTITAASVDAGQRGRSRFRATLSDGSGTLELTWF-RGVRYFARAVVPGETLAVHGKV 117

Query: 130 KKLKNRIIMVHPHYIFHNSQ-------DVN----------FPLIEAVYSLPTGLSVDLFK 172
                R  M HP +    S        D++          +P  EA+    +GL     +
Sbjct: 118 GYFGARAQMQHPDFDRLGSDRHEDGGSDLSLYNTGRIIPLYPTTEAMKL--SGLGSRQLR 175

Query: 173 KIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
            ++ +A   + P   E + + +L   S   +AEA+  IH P      E    A  R+ + 
Sbjct: 176 SLMAQAFELQPPGARENLSRSILDSNSLMPLAEAYREIHFPSSP---ERLGIAERRMKWT 232

Query: 232 ELLAGQIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
           EL   Q+ L  +R+   + +         G+   ++  ++P+  T +Q+ AI++I +D+ 
Sbjct: 233 ELFYAQL-LFALRRHTARHLRQAAVFTHSGEYTSRLYASLPYELTAAQKDAIREIYRDLR 291

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
             + M R+LQGDVGSGKT VA+ +MA A +   Q+V MAP  ILA QH+  ++++ +   
Sbjct: 292 SGSPMQRLLQGDVGSGKTAVAMFSMALAADNKLQSVFMAPTEILAVQHWLSMRRFFEPLG 351

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + V + +G  P+  R + L R+  G  H+ +GTHAL +D+++Y +L LVI+DEQHRFGV 
Sbjct: 352 LEVALFSGRQPKRLREELLLRLREGDVHVAVGTHALIEDAVRYRELGLVIIDEQHRFGVL 411

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR  L +KA+ PHVLLMTATPIPRTL +   GD+D+S I + PAGR+P+KT++ P +   
Sbjct: 412 QRKALQEKASNPHVLLMTATPIPRTLTMGVFGDLDVSVIRQMPAGRRPVKTIVRPESEQA 471

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSD 527
           +V + L+  +++G + Y + P +E  ++++ ++ VE F  L         + +IHG+MS 
Sbjct: 472 KVHQFLRREIADGHQGYIVYPLVEASEKTDLQAAVESFGELSGAVFPDLRLGLIHGQMSP 531

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K+ VM  F+ G   +L+ TTVIEVG+DV +A++II+E+AE FGLAQLHQLRGRVGRG+
Sbjct: 532 EEKDGVMQRFRTGELHILVGTTVIEVGVDVPNATVIIVEHAERFGLAQLHQLRGRVGRGQ 591

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLI 646
             S C LLY   L+ +   RL  +++T DGF+I+E D + R  G +LG +QSG +    I
Sbjct: 592 HPSHCFLLYG-KLTGDGRERLQAMESTSDGFVISEMDARIRGAGNVLGKEQSGSLSGLKI 650

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
           A   L   +++ AR  A  ++  D  L     + +R   Y+ +Y
Sbjct: 651 ADLSLDFDIMQSARSAAFALVEADSRLALPENEPVR-RWYMDRY 693


>gi|228473081|ref|ZP_04057838.1| ATP-dependent DNA helicase RecG [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275663|gb|EEK14440.1| ATP-dependent DNA helicase RecG [Capnocytophaga gingivalis ATCC
           33624]
          Length = 698

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 254/685 (37%), Positives = 378/685 (55%), Gaps = 30/685 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   RGVG + +L L   +   N     F DLL   P+ +ID+    KI ++ E  
Sbjct: 2   LETPIEYLRGVGPQRALLLKSELQVAN-----FQDLLHLFPTRYIDKTQYYKIQDLRETT 56

Query: 69  I-VTITGYISQHSSFQLQKRRPYKIL--LNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
             V + G I    + + + +   +++    DGTG + L++F R ++ +K+         +
Sbjct: 57  TEVQVVGRIIHLKTVEGKNKTQQRLVATFTDGTGNMELVWF-RPSQWIKDHLLLNVPYVI 115

Query: 126 TGKIKKLKNRIIMVHP---------HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
            GK         M HP         H +  N Q V +P  E +     G++  + +K+I 
Sbjct: 116 FGKCTPFSGVFSMAHPEMETLEEHQHSLQGNIQAV-YPSTEKLTK--KGITQKVIRKLIE 172

Query: 177 EALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
                +     E +   LL         EA   IH P+     E  S A+ RL  +EL  
Sbjct: 173 SLFQEVGKNFFETLPPQLLTSLRLLPKGEALFQIHFPQSQ---ELLSKAQFRLKLEELFY 229

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRM 294
            Q+ L+      KK  G P  + G        +++PF  T +Q+  IK+I  DM+   +M
Sbjct: 230 IQLQLIQKNYLNKKLKGYPFPLVGDYFNTFYHKHLPFPLTNAQKRVIKEIRSDMATGAQM 289

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVG+GKT+VAL AM  A++   QA +MAP  ILAQQHY+ I        I   +
Sbjct: 290 NRLLQGDVGAGKTIVALFAMLLALDNQYQACLMAPTEILAQQHYQSIASLLAPMDIQPAL 349

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+     RRK LE + +GQ  I+IGTHAL +D ++++ L L I+DEQHRFGV+QR KL
Sbjct: 350 LTGSTKTKERRKILEELENGQLQIVIGTHALLEDKVKFHNLGLSIIDEQHRFGVEQRSKL 409

Query: 415 TQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             K A  PHVL+M+ATPIPRTL ++  GD+D+S I E P GRKPI+T+        +V +
Sbjct: 410 WHKNALPPHVLIMSATPIPRTLAMSLYGDLDVSVIDELPPGRKPIQTLHQYDTHRAKVYQ 469

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDK 530
            L   +++G++ Y + P IEE +  +F+++ E +  L   F     +IA++HG++   +K
Sbjct: 470 FLHDQIAKGRQVYVVYPLIEESEALSFKNLSEGYQQLCSAFPPPKYTIAMVHGQLKPEEK 529

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E+ M  F  G  ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S
Sbjct: 530 EAQMQLFVEGKAQIMVATTVIEVGVNVPNASVMLIESAERFGLSQLHQLRGRVGRGAEQS 589

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            CIL+    LS +S TR+  +  T DGF IAE DLK R  G+++G +QSG+    IA   
Sbjct: 590 YCILMTDVKLSHDSRTRMETMVATCDGFQIAEVDLKLRGPGDLMGRQQSGVLSLKIADLV 649

Query: 651 LHDSLLEIARKDAKHILTQDPDLTS 675
               LL++AR  A  ++  DP+LT 
Sbjct: 650 KDSQLLKVARDYATDLIRVDPELTD 674


>gi|121634295|ref|YP_974540.1| putative DNA helicase [Neisseria meningitidis FAM18]
 gi|120866001|emb|CAM09738.1| putative DNA helicase [Neisseria meningitidis FAM18]
 gi|325131701|gb|EGC54406.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M6190]
 gi|325137717|gb|EGC60294.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis ES14902]
          Length = 680

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 229/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEV
Sbjct: 483 SETLQLQTATETLEQLQTALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEI 662


>gi|332363900|gb|EGJ41679.1| DNA helicase RecG [Streptococcus sanguinis SK355]
          Length = 671

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 246/671 (36%), Positives = 381/671 (56%), Gaps = 30/671 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+       ET   DLL Y P  + D   +  + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              I+G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVISGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184
             K K  +  +    +    +D     ++ VY L  G+S    V L K    + L  L  
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E +   LL+     S  EA   +H P   KDF     A  R+ ++EL   Q+ L +++
Sbjct: 167 LEENLPHPLLELYQLVSRVEAVRAMHFP---KDFADYKQALRRVKFEELFYFQMQLQVLK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ K    G+ I+       +  +++PF  T +QE ++ +ILQD+     M R+LQGDVG
Sbjct: 224 RETKAVSNGLKIDWRSDTVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A 
Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RRK LE I  GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P V
Sbjct: 342 RRKTLEAIEKGQMDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ LK  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +K+++M  FK G 
Sbjct: 462 QVYFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKDAIMQDFKEGR 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++   R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 ESGKRRMKIMTETIDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPD 672
            A  I T DP+
Sbjct: 641 VASQI-TADPN 650


>gi|15903582|ref|NP_359132.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae R6]
 gi|1150620|emb|CAA90280.1| MmsA [Streptococcus pneumoniae]
 gi|15459203|gb|AAL00343.1| Branch migration of Holliday junctions, junction-specific DNA
           helicase [Streptococcus pneumoniae R6]
 gi|1588991|prf||2209420A mmsA gene
          Length = 671

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 244/674 (36%), Positives = 384/674 (56%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ + EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFAELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEAWQEDPE 656


>gi|313676091|ref|YP_004054087.1| ATP-dependent DNA helicase recG [Marivirga tractuosa DSM 4126]
 gi|312942789|gb|ADR21979.1| ATP-dependent DNA helicase RecG [Marivirga tractuosa DSM 4126]
          Length = 697

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 246/690 (35%), Positives = 384/690 (55%), Gaps = 34/690 (4%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI- 69
            P+   +G+G + +  ++K +         + DLL ++P  + DR    K+ E++ E   
Sbjct: 7   TPIEFLKGLGPQKAAHINKELGIFT-----YADLLQHYPFRYEDRTKFYKVRELNAEMSN 61

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           V + G I         +++   +   D TG + L++F      +      G    V G+ 
Sbjct: 62  VQVKGQIRSKQLIGAGRKQRLAVQFADETGIMELVWF-SGINWISPKLRTGVDYVVYGQP 120

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGL------SVDLFK---KIIVEALS 180
           K+  ++  M HP              ++ VYS    L      S  +FK    ++ EA +
Sbjct: 121 KRFGSKYTMAHPELEILTPAVSQNEFLQPVYSTTETLRKRYLDSKAIFKFQKTLLKEAYN 180

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           R+P   E +   +LQ+  F +  +A   IH P   K+ +    AR R+ +DE    Q+ L
Sbjct: 181 RIP---ETLPPHILQQYGFLAKRDAVVQIHVP---KNQQLLQKARFRMKFDEFFFMQLRL 234

Query: 241 LLMRK----QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           L+ +K    +FK ++    ++  +  Q    ++PF  T +Q+  IK+I  D     +M R
Sbjct: 235 LMQKKVRLEKFKGQLLQKTDLLTEFYQS---HLPFDLTGAQKKVIKEIFSDFKSGKQMNR 291

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VA I+   A+++G Q  +MAP  ILA QHYE +K++     + + ++T
Sbjct: 292 LLQGDVGSGKTIVAFISALIAIDSGAQVALMAPTQILANQHYEGLKEFADKIGVTIALLT 351

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+     RR+  E +  G+  I++GTHAL ++ +Q+  L L IVDEQHR+GV QR +L +
Sbjct: 352 GSTKTKARREIHENLKSGELKILVGTHALLEEVVQFQNLGLAIVDEQHRYGVAQRARLWK 411

Query: 417 KAT--APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIE 473
           K     PHVL+MTATPIPRTL ++  GD+DIS I E P GRKPIKT+     NR+ ++  
Sbjct: 412 KNENFVPHVLIMTATPIPRTLSMSVYGDLDISIIDELPKGRKPIKTIHQYDANRL-KLNG 470

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
            LK  + +G++ Y + P IEE ++ + + +++ + S+   F    I+I+HG+M   DK+ 
Sbjct: 471 FLKKEIEKGRQVYVVYPLIEESEKLDLKDLMDGYESIARSFPEYPISIVHGKMKAADKDF 530

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M  F  G  KL++ATTVIEVG++V +AS+++IENAE FGLAQLHQLRGRVGRG E S C
Sbjct: 531 EMARFVKGETKLMVATTVIEVGVNVPNASVMVIENAERFGLAQLHQLRGRVGRGAEQSYC 590

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +L+    LSK + TR+  +  T DGF IA+ D+  R  G+++G +QSG    LI      
Sbjct: 591 VLVTSYKLSKEARTRVETMVRTTDGFEIAQVDMNLRGPGDMMGTQQSGQLDLLIGDLRED 650

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           + +L IAR+ A+ I+ +DP+L S     IR
Sbjct: 651 EPILSIARQSAQAIIAKDPNLESEENALIR 680


>gi|94676686|ref|YP_588583.1| ATP-dependent DNA helicase RecG [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219836|gb|ABF13995.1| ATP-dependent DNA helicase RecG [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 699

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 242/655 (36%), Positives = 369/655 (56%), Gaps = 33/655 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG      ++K+   G  N     D+L + P+ + DR     I      + +T
Sbjct: 11  PLTALYGVGTN---LINKLTKLGLEN---LQDVLLHLPTRYEDRTKIFLIRNAPIGKFIT 64

Query: 72  ITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +     S  + ++      L D +G +T+LFF     M K     G+ +T  GKI 
Sbjct: 65  IQGIVLDSQISINIHRKSILNCRLQDDSGVLTILFFNGNLAMKKG-LCPGKLVTAYGKIY 123

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPL--IEAVYSLPTGLSVDLFKKIIVEALSRLP----- 183
             K    M+HP Y  H+++  N  L  +  +Y    G+     + I  +AL  L      
Sbjct: 124 LEKKGARMIHPEYCIHSNRQGNKLLSSLTPIYPTTKGVDQTTLRAITDQALKFLDQTTVS 183

Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWT-SPARERLAYDELLAGQI 238
            +LP  +   L+      S++EA + +H P       D +    PA+ RL  +EL+A  +
Sbjct: 184 ELLPPQLSSGLM------SLSEALHNLHRPPTNISISDLKLGLYPAQRRLILEELIAYYL 237

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +LL  R   KK + +P+N +  + Q  + ++PFS T +Q+ A+ +I QD+++   M+R+L
Sbjct: 238 SLLSARTVEKKLLALPLNNKTDLIQCFISSLPFSLTIAQQRAVMEIDQDLARNIPMMRLL 297

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA +A   A+    Q V+M P  +LA+QH +    +     I V  +TG 
Sbjct: 298 QGDVGSGKTLVAALAALRAISNSSQVVLMTPTELLAEQHTKNFCNWFTPLGITVSWLTGK 357

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE IA G   +++GT ALFQ  +Q+ +L LVI+DEQHRFGV QRL L +K 
Sbjct: 358 QKGKIREAQLESIASGHVAMVVGTQALFQKKVQFSRLSLVIIDEQHRFGVHQRLTLWEKG 417

Query: 419 T----APHVLLMTATPIPRTLVL-TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           +     PH L++TATPIPRTL + TS  + D S I E P+GR P+ T+ I  NR  E+I+
Sbjct: 418 SQHGFQPHQLILTATPIPRTLAMTTSCINFDTSVIDELPSGRVPVTTIAITNNRRHEIIQ 477

Query: 474 RL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531
           RL K+ L + ++ YW+C +IE+  +   +SV   +  +  +     I +IHGRM   +K+
Sbjct: 478 RLEKLCLQDKRQVYWVCTRIEKSTQRELQSVKATWEEIRSYLPELQIGLIHGRMKAQEKQ 537

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            +M +F+ G  +LL+ATTVIEVG+D+ +AS+IIIENAE  GLAQLHQLRGRVGR    S 
Sbjct: 538 QLMQAFQAGKIRLLVATTVIEVGVDIPNASLIIIENAERLGLAQLHQLRGRVGRAIVASH 597

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
           C+L+Y+ PL+K +  R+ +++++ +GF+IA+ DL  R  G++ G +Q+G  +F I
Sbjct: 598 CVLIYNSPLNKAAQQRIKIIRDSNNGFVIAQHDLDIRGPGKLFGTRQTGQTEFRI 652


>gi|148989348|ref|ZP_01820716.1| hypothetical protein CGSSp6BS73_07619 [Streptococcus pneumoniae
           SP6-BS73]
 gi|149021207|ref|ZP_01835453.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP23-BS72]
 gi|147925098|gb|EDK76178.1| hypothetical protein CGSSp6BS73_07619 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147930308|gb|EDK81292.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP23-BS72]
          Length = 671

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 241/663 (36%), Positives = 380/663 (57%), Gaps = 25/663 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ ++   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLDWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHI 666
            +I
Sbjct: 643 SYI 645


>gi|120436677|ref|YP_862363.1| ATP-dependent DNA helicase RecG [Gramella forsetii KT0803]
 gi|117578827|emb|CAL67296.1| ATP-dependent DNA helicase RecG [Gramella forsetii KT0803]
          Length = 699

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 253/690 (36%), Positives = 396/690 (57%), Gaps = 41/690 (5%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P+   +GVG   S  L K +N        + DL+ + P+ +ID+    KI+++  
Sbjct: 4   NLLQTPIEYLKGVGPNRSEVLKKELNI-----QYYRDLINFFPNRYIDKTGFYKINQLQR 58

Query: 67  ERI-VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKI 123
               V I G I+      ++++R  +++ +  D TG++ L++F R  + ++         
Sbjct: 59  NSSEVQIVGKITHLK--MVEQKRGKRLVADFIDDTGKMELIWF-RGHKWIRENLKLNTPY 115

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPT-------GLSVDLFKKII 175
            + GK         M HP          N  P ++ +Y  P+       G++  +  K++
Sbjct: 116 VIFGKTNSYNGAFSMPHPEMELVADYKKNLRPAMQPIY--PSTEMLGKKGITNRVIMKLM 173

Query: 176 VEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            E L +  +   E +  DL+ +    S AEA   IH P   K+ E  + A+ RL ++EL 
Sbjct: 174 QEVLQQTGLKFSESLNADLIDELKLISKAEALFNIHFP---KNQELLAKAQFRLKFEELF 230

Query: 235 AGQIALLLMRKQFKKEI-GIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKN 292
             Q+ LL      K++I G   +  G+      + ++PF  T +Q+  IK+I  DM    
Sbjct: 231 FIQLQLLRKNMLHKQKIKGFNFDQIGEYFNNFYQEHLPFDLTGAQKRVIKEIRADMGSGA 290

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +M R+LQGDVGSGKT+VAL++M  A++ G QA +MAP  IL+ QHY  + +  ++  I +
Sbjct: 291 QMNRLLQGDVGSGKTIVALMSMLIALDNGFQACLMAPTEILSIQHYHGLAELCKDLNIEI 350

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+   A RR+  E++ +G+  I+IGTHAL +D +++  L L ++DEQHRFGV QR 
Sbjct: 351 FLLTGSTKTAKRREIHEKLENGEIDILIGTHALLEDKVKFKNLGLAVIDEQHRFGVAQRA 410

Query: 413 KLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           KL +K    PHVL+MTATPIPRTL ++  GD+DIS I E P GRKP+KTV    +R D  
Sbjct: 411 KLWKKNHIPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPVKTV----HRFDS- 465

Query: 472 IERLKVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524
             RLKV       + +G++ Y + P I+E ++ +++ +++ + S+   F    I+I+HG+
Sbjct: 466 -NRLKVFRFIKEEVQKGRQVYVVYPLIQESEKMDYKDLMDGYESIAREFPEFQISIVHGQ 524

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   DK+  MD F     ++++ATTVIEVG+++ +AS++IIE+AE FGL+QLHQLRGRVG
Sbjct: 525 MKPADKDYEMDRFVRAETQIMVATTVIEVGVNIPNASVMIIESAERFGLSQLHQLRGRVG 584

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RG E S CIL+    LS +S TRL  + +T DGF IAE DLK R  G+++G +QSG+   
Sbjct: 585 RGAEQSFCILMTGHKLSNDSKTRLETMTSTNDGFEIAEVDLKLRGPGDLMGTQQSGVLNL 644

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            IA     +S+L++AR  A  +L  DP+L+
Sbjct: 645 KIADIVKDNSILQLARNYASRLLKADPNLS 674


>gi|189501758|ref|YP_001957475.1| ATP-dependent DNA helicase RecG [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497199|gb|ACE05746.1| hypothetical protein Aasi_0311 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 695

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 241/676 (35%), Positives = 382/676 (56%), Gaps = 24/676 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-I 69
            P+   +GVG K ++ L + +   N       DL+ ++P  + DR     I+++ E+   
Sbjct: 7   TPIEYLKGVGPKKAVLLQEELQIYN-----LADLIQHYPFRYEDRTCFHNIADVREDLPY 61

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           V + G I         K+R    L  D TG I+L++F +   +LK +   G    + GK 
Sbjct: 62  VQLKGVIQSPKIITTGKKRLVATL-KDETGVISLVWFQKINGILKQLR-PGILYQLFGKP 119

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLF-----KKIIVEALSRLPV 184
               +   +VHP      +Q      +  VY     L          +++    + + P+
Sbjct: 120 TVYNSCYTIVHPEMEIFTAQTTQEKTLIPVYHTTEKLKASYIDSKYIRRVQANLIEQFPI 179

Query: 185 -LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            LPE + +DL  +        A   IH P      E    AR RL ++EL   Q+ LL  
Sbjct: 180 HLPETLPEDLCAQYKIIDKKTALANIHFPATP---EILQKARFRLKFEELFYVQLRLLQA 236

Query: 244 RK-QFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           R+ + +K+IG     + K+ Q   +N IPF  T +Q+  +K+I  D+    +M R+LQGD
Sbjct: 237 RQLRLEKQIGAAYK-DTKLLQDFYQNVIPFELTGAQKRVVKEIYADLKSGKQMNRLLQGD 295

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA ++M   + +G Q  +MAP  IL +QHY+ ++++     + + I+TG+   
Sbjct: 296 VGSGKTMVAFLSMLIVLGSGAQVAMMAPTEILVEQHYKKLQEFAAPLSLQIGILTGSTKT 355

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK---A 418
           + RRK L+ +A G   II+GTH+L  +++ +  L L ++DEQHRFGV QR K  Q+    
Sbjct: 356 SERRKILDELAQGTLQIIVGTHSLINENVVFKNLGLAVIDEQHRFGVMQRAKFWQRDDVQ 415

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PHVL+M+ATPIPRTL +T  GD+D+S + E PAGRKPIKTV     +   V   +K  
Sbjct: 416 PVPHVLIMSATPIPRTLAMTLYGDLDVSVVDEMPAGRKPIKTVHYYDAQRLRVFRFVKDQ 475

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +S G++ Y + P IEE ++ +++++++ + S+   F    ++I+HGRM   DK+  M  F
Sbjct: 476 ISLGRQVYVVYPLIEESEKMDYKNLIDGYESICRAFPEVPLSIVHGRMKASDKDYEMQRF 535

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G  K+++ATTVIEVG++V +AS+++IENA+ FGL+QLHQLRGRVGRG++ + CIL+  
Sbjct: 536 VKGETKIMVATTVIEVGVNVPNASVMVIENADRFGLSQLHQLRGRVGRGQDQAYCILMTD 595

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             L+K S  R+  L +T +GF IA+ DL+ R  G+++G++QSG+ +  IA       +L+
Sbjct: 596 YKLNKKSRERIKALVHTNNGFEIADMDLRLRGPGDLMGVQQSGLLELKIADVARDGHILQ 655

Query: 658 IARKDAKHILTQDPDL 673
           IAR+ AK I+ +DP L
Sbjct: 656 IAREAAKEIIKKDPML 671


>gi|325979039|ref|YP_004288755.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178967|emb|CBZ49011.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 671

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 245/635 (38%), Positives = 365/635 (57%), Gaps = 25/635 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100
           DLL Y+P  + D   + ++SE+++     ITG +   ++ Q    KR      +  G   
Sbjct: 31  DLLLYYPFRYEDFKSK-RVSELADGEKAVITGTVVTPANVQYYGYKRNRLSFKIKQGEAV 89

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           I + FF +    L +    G  I + GK   LK+ +  +    I    +D   P    VY
Sbjct: 90  IAISFFNQP--YLADKVELGSDIAIFGKWDALKSAVTGMK---ILAQVEDDMQP----VY 140

Query: 161 SLPTGLSVDLFKKIIVEA--LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
            +  G+S +   K I  A  +     LPE + + LL K      A+A   +H P   KD 
Sbjct: 141 RVAQGISQNALVKAIKSAFEIGAQNWLPENLPQLLLDKYRLLGRAQATAAMHFP---KDL 197

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKS 276
                A  R+ ++EL   Q+ L  ++   K E  G+ I   E K+A KI   +PF+ T  
Sbjct: 198 AEYKQALRRIKFEELFYFQMNLQALKADNKSEANGLAIAYDEQKVADKIAA-LPFTLTGG 256

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  ++ DIL DM     M R+LQGDVGSGKT+VA +AM A   AG Q+ +M P  ILA+Q
Sbjct: 257 QRRSLDDILADMRSGGHMNRLLQGDVGSGKTVVASLAMYATYTAGFQSALMVPTEILAEQ 316

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+E + +   +  I   I+T  M  A ++ AL  IA G   +I+GTHAL QD++ Y++L 
Sbjct: 317 HFESLTQLFPDLSI--AILTSGMKTAAKQAALSAIADGSVDMIVGTHALIQDAVTYHRLG 374

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV QR    +K   P VL+MTATPIPRTL +T+ G++D+S I E PAGRK
Sbjct: 375 LVITDEQHRFGVNQRRVFREKGENPDVLMMTATPIPRTLAITAFGEMDVSIIDELPAGRK 434

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PI T  +   +++ V++ +K  L +G +AY I P IEE +  + ++ V     L  +F  
Sbjct: 435 PIITRWVKHEQLEVVLDWVKKELQKGAQAYVISPLIEESESLDLKNAVALHEELSAYFAD 494

Query: 517 S--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           S  +A++HGRM + +KE++M  FK    ++L++TTVIEVG++V +A+I+II +A+ FGL+
Sbjct: 495 SATVALMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMIIMDADRFGLS 554

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG++ S  IL+ +P  ++    R+ ++  T DGF++AE DLK R  GEI 
Sbjct: 555 QLHQLRGRVGRGDKQSYAILVANPK-TQTGKERMKIMTETTDGFVLAEADLKMRGSGEIF 613

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           G +QSG+P+F +A      ++LE AR+ A  I+++
Sbjct: 614 GTRQSGIPEFQVADIVEDYNILEEARRVASQIVSE 648


>gi|325693569|gb|EGD35488.1| DNA helicase RecG [Streptococcus sanguinis SK150]
          Length = 671

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 240/671 (35%), Positives = 384/671 (57%), Gaps = 30/671 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+       ET   DLL Y P  + D   +  + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFTKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  + V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVVLAVNFFNQPYLADKIEVGANVAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184
             K K  +  +    +    +D     ++ VY L  G+S    V L K    + L  L  
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL++    S  EA   +H P+   D++    A  R+ ++EL   Q+ L +++
Sbjct: 167 LEENLPQPLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ K    G+ I+ +     +  +++PF  T +QE ++ +IL D+     M R+LQGDVG
Sbjct: 224 RETKAVSNGLKIDWQSDAVAEKKQSLPFELTSAQERSLTEILHDLRSPGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A 
Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  I +GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P V
Sbjct: 342 RRETLAAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ LK  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G 
Sbjct: 462 QIYFISPLIEESEALDLKNAIALEEELTAYFGQQAKVALLHGKMKSEEKEAIMQDFKEGQ 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++   R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPD 672
            A  I T DP+
Sbjct: 641 VASQI-TADPN 650


>gi|157150698|ref|YP_001449735.1| ATP-dependent DNA helicase RecG [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075492|gb|ABV10175.1| ATP-dependent DNA helicase RecG [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 671

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 245/676 (36%), Positives = 389/676 (57%), Gaps = 34/676 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PLS   GVG K +   +K+       ET   DLL Y P  + D   + ++ ++ +  
Sbjct: 3   LHQPLSVLPGVGPKSAEKFAKL-----GIET-LQDLLLYFPFRYEDFQSK-QVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              I+G ++  ++ Q    +  ++  +   GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVISGIVATPANVQYYGFKRNRLRFSIKQGEVILAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184
             K K  +  +    +    +D     ++ VY +  G+S    + L K    + L  L  
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRVAQGISQISLIKLIKTAFDQGLDLL-- 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E + + LL++    S AEA   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 IEENLPQVLLERYHLLSRAEAVRAMHFP---KDLAEYKQALRRVKFEELFYFQMQLQVLK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K    G+ ++ + +  Q+    +PF  T +QE A+ +IL D+     M R+LQGDVG
Sbjct: 224 METKDVSNGLVLDWQEEQLQEKKSQLPFPLTGAQERALAEILSDLKSPAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH+E + +   + ++   ++TG+M  A 
Sbjct: 284 SGKTVVAGLAMYAVYTAGYQSALMVPTEILAEQHFESLSQLFPDLKLA--LLTGSMKTAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           R++ L  I  GQ  ++IGTHAL QD +QY++L LVIVDEQHRFGV QR  L +K   P V
Sbjct: 342 RKETLLAIELGQVDMVIGTHALIQDGVQYHRLGLVIVDEQHRFGVAQRRILREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ +K  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWIKKELVKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++ ++    L  +F   + ++++HG+M   +KE++M +FKN  
Sbjct: 462 QVYFISPLIEESEALDLKNAIDLEEELQAYFGGDARVSLLHGKMKSDEKEAIMQAFKNKE 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  +
Sbjct: 522 VDILVSTTVIEVGVNVPNATIMVIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++   R+ ++  T DGF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 ESGKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILT-----QDPD 672
            A  I+      QDPD
Sbjct: 641 VASQIVQDRHWRQDPD 656


>gi|307707070|ref|ZP_07643867.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK321]
 gi|307617596|gb|EFN96766.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK321]
          Length = 671

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 241/663 (36%), Positives = 378/663 (57%), Gaps = 25/663 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K +  G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYVKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  N+PF+ T +QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKENLPFALTPAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    + ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQSLFPDLKLA--LLTGSLKTAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQDFKEKKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHI 666
            +I
Sbjct: 643 SYI 645


>gi|237649235|ref|ZP_04523487.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CCRI
           1974]
 gi|237821995|ref|ZP_04597840.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 671

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 243/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +  +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKASQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEAWQEDPE 656


>gi|169834385|ref|YP_001695073.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168996887|gb|ACA37499.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 671

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 241/663 (36%), Positives = 380/663 (57%), Gaps = 25/663 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +   +   +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASL---NGMKVLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ ++   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLDWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHI 666
            +I
Sbjct: 643 SYI 645


>gi|186685619|ref|YP_001868815.1| ATP-dependent DNA helicase RecG [Nostoc punctiforme PCC 73102]
 gi|186468071|gb|ACC83872.1| ATP-dependent DNA helicase RecG [Nostoc punctiforme PCC 73102]
          Length = 831

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 231/647 (35%), Positives = 374/647 (57%), Gaps = 23/647 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99
           DLLFY+P   ID   +  I E+     VTI   + + + F   K +   IL   + D +G
Sbjct: 162 DLLFYYPRDHIDYARQVNIRELQAGETVTIVATVKRCNCFSSPKNQKLSILELVVKDNSG 221

Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD 150
           +I +  FY  T        E LK  +  G  +   G +K+ K  + + +P   +  N  D
Sbjct: 222 QIKIGRFYAGTRFSSRAWQESLKRRYPVGSILAACGLVKESKYGLTLDNPELEVLANPGD 281

Query: 151 ----VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
               +N   +  +Y L  G+  +  ++ ++ AL     L + +   L QK     + +A 
Sbjct: 282 SIESLNIGRVVPIYGLTEGVVANTVRQAVIAALPAAANLKDPLPSGLRQKYGLMELKDAI 341

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKI 265
             IH P  +   +    AR RL +DE    Q+ LL  ++Q +      I V  G++ +K 
Sbjct: 342 ANIHFPSDSAALQV---ARRRLVFDEFFYLQLGLLQRQQQARAIQTSAILVPRGQLVEKF 398

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF  T +Q+  + DIL D+ +   M R++QGDVGSGKT+VA++A+ AA+++G QA 
Sbjct: 399 HEILPFKLTGAQQRVLNDILNDLQKPVPMNRLVQGDVGSGKTVVAVLAILAAIQSGYQAA 458

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  +LA+QHY  +  +     + VE++TG+   A RR+   ++  G+  +++GTHAL
Sbjct: 459 LMAPTEVLAEQHYRKLVSWFNLLHLPVELLTGSTKTAKRRQIHSQLGTGELPLLVGTHAL 518

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            QDS+ + +L LV++DEQHRFGV+QR +L QK   PHVL MTATPIPRTL LT  GD+D+
Sbjct: 519 IQDSVNFQQLGLVVIDEQHRFGVEQRARLQQKGEQPHVLTMTATPIPRTLALTIHGDLDV 578

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S+I E P GR+ I+T ++   + +   + ++  + +G++ Y + P +EE ++ + RS V+
Sbjct: 579 SQIDELPPGRQKIQTTVLSGQQRNHAYDLIRREIVQGRQVYVVLPLVEESEKLDLRSAVD 638

Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
               L E       + ++HGRMS  +K+  +  F++   ++L++TTV+EVG+DV +A+++
Sbjct: 639 EHQKLQESVFPDFQVGLLHGRMSSAEKDESITKFRDNQTQVLVSTTVVEVGVDVPNATVM 698

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +IENAE FGL+QLHQLRGRVGR    S C+L+     S ++  RL VL+ ++DGF I+E 
Sbjct: 699 LIENAERFGLSQLHQLRGRVGRDAAQSYCLLM-SSSRSPDAQQRLKVLEQSQDGFFISEM 757

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           D++ R  G++LG +QSG+P F +A     + +L +AR+ A+ I+  D
Sbjct: 758 DMRFRGPGQVLGTRQSGVPDFTLASLVEDEEVLLLARQAAEKIIEMD 804


>gi|294102390|ref|YP_003554248.1| ATP-dependent DNA helicase RecG [Aminobacterium colombiense DSM
           12261]
 gi|293617370|gb|ADE57524.1| ATP-dependent DNA helicase RecG [Aminobacterium colombiense DSM
           12261]
          Length = 695

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 229/649 (35%), Positives = 367/649 (56%), Gaps = 20/649 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI---LLNDGTG 99
           DL+ + P  + DR     ++++  E  V++   +      Q   R+ + I   L+ DG  
Sbjct: 35  DLILFFPRRYEDRRGLTSLAKLRPETTVSLLVRVVAVEKRQ-TSRKGFVIIQGLMTDGQD 93

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIE 157
            +  ++F RK   L+ +   G+++ + G I      + + +P +  I       +   + 
Sbjct: 94  FLRAVWFNRKG--LERLLTPGKEVALYGPIDWKYGHLQITNPEFEIIEEGESPESIGQVV 151

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            +Y L  GL    F+K+I   L   P + + +   L  K +FP + ++   +H P+  + 
Sbjct: 152 PIYPLTAGLHQRWFRKLIRFCLDNSPFIFDPLPDFLRLKHAFPPLYDSILEMHYPQGRES 211

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKK--EIGIPINVEGKIAQKILRNI-PFSPT 274
           ++    AR+RLAY EL   Q  + L R +  +  E    +   G++ ++ L+ I P+  T
Sbjct: 212 WK---KARDRLAYQELFVLQTGMALRRGERSRLAEKAPILPESGRLKERFLKEIFPYPLT 268

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           ++Q+    +I QDM+    M R+LQGDVGSGKT VA++A+  AVE G Q   MAP  ILA
Sbjct: 269 EAQKKVSLEISQDMALNIPMHRLLQGDVGSGKTAVAVLALLQAVEGGYQGAFMAPTEILA 328

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           QQHY  +  + +   + V ++ G++    R   L++I+ G+AH+++GTHALF D + +  
Sbjct: 329 QQHYYRLHSFLEPLGVSVVLLIGSLKNRARELTLQKISTGEAHVVVGTHALFSDPVTFSN 388

Query: 395 LILVIVDEQHRFGVQQ----RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           L   ++DEQHRFGV Q    R K   +  APH+L+MTATPIPRTL L+  GD+ +S I E
Sbjct: 389 LGFAVIDEQHRFGVLQKNALRAKGANEGQAPHILVMTATPIPRTLTLSVYGDLSVSVIDE 448

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P GR PI+T  +       +   ++   S  ++ YW+CP I+E +  +  SV ER+  L
Sbjct: 449 MPPGRTPIQTRWLKKKEEGRLWAFIRERCSARERIYWVCPLIDESETLSVASVTERYEYL 508

Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            + F   ++ ++HG++   +KE++M SF  G   L+++TTVIEVG+DV  A++++IE+A+
Sbjct: 509 KKLFPDLNVGLLHGQLPSSEKETIMRSFARGHLDLIVSTTVIEVGVDVPQATVMVIEDAD 568

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            FGL+QLHQLRGRVGRG   S C+LL + P ++    RL V+  T DGF IAE DL+ R 
Sbjct: 569 RFGLSQLHQLRGRVGRGGNQSYCVLLSN-PTTREGVERLKVMCATTDGFKIAEADLRLRG 627

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            GE+ G++Q G+  F +A      SLL++ARKDA  ++  DP L+  +G
Sbjct: 628 PGEVCGVRQHGITDFRVADLLKDRSLLDMARKDAFSLVECDPRLSEEQG 676


>gi|182684639|ref|YP_001836386.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CGSP14]
 gi|303254307|ref|ZP_07340415.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS455]
 gi|303258630|ref|ZP_07344610.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP-BS293]
 gi|303261793|ref|ZP_07347739.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263657|ref|ZP_07349579.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS397]
 gi|303266833|ref|ZP_07352712.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS457]
 gi|303269890|ref|ZP_07355632.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS458]
 gi|182629973|gb|ACB90921.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CGSP14]
 gi|301802397|emb|CBW35151.1| ATP-dependent DNA helicase [Streptococcus pneumoniae INV200]
 gi|302598658|gb|EFL65696.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS455]
 gi|302636876|gb|EFL67365.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP14-BS292]
 gi|302640131|gb|EFL70586.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP-BS293]
 gi|302640568|gb|EFL70973.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS458]
 gi|302643601|gb|EFL73869.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS457]
 gi|302646695|gb|EFL76920.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS397]
          Length = 671

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 243/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K       +A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQSLLDKYKLMFRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFILAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEAWQEDPE 656


>gi|306824746|ref|ZP_07458090.1| DNA helicase RecG [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432957|gb|EFM35929.1| DNA helicase RecG [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 671

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 243/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-RVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +   ++  N+PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTEVKENLPFALTQAQEKSLQEILIDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    + ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPDLKLA--LLTGSLKVAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A  IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADFIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVSNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEGWKEDPE 656


>gi|15901531|ref|NP_346135.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae TIGR4]
 gi|111657513|ref|ZP_01408256.1| hypothetical protein SpneT_02001279 [Streptococcus pneumoniae
           TIGR4]
 gi|225857310|ref|YP_002738821.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae P1031]
 gi|18279285|sp|Q54900|RECG_STRPN RecName: Full=ATP-dependent DNA helicase recG
 gi|14973191|gb|AAK75775.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae TIGR4]
 gi|225725262|gb|ACO21114.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae P1031]
          Length = 671

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 241/674 (35%), Positives = 387/674 (57%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P+   +++    A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFPKYLAEYK---QALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEAWQEDPE 656


>gi|320547460|ref|ZP_08041746.1| DNA helicase RecG [Streptococcus equinus ATCC 9812]
 gi|320447805|gb|EFW88562.1| DNA helicase RecG [Streptococcus equinus ATCC 9812]
          Length = 671

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 245/635 (38%), Positives = 368/635 (57%), Gaps = 25/635 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100
           DLL Y+P  + D   +  +  +  E+ V ITG +   ++ Q    KR      +  G   
Sbjct: 31  DLLLYYPFRYEDFKSKSALDLVDGEKAV-ITGTVVTPANVQYYGYKRNRLSFKIRQGEAV 89

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           IT+ FF +    L +    G  + + GK   LK+ +  +    I    +D   P    VY
Sbjct: 90  ITVSFFNQP--YLSDKVELGSDVAIFGKWDALKSAVTGMK---ILAQVEDDMQP----VY 140

Query: 161 SLPTGLSVDLFKKIIVEA--LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
            +  G+S     K I  A  +     LPE + + LL+K    S A+A   +H P   KD 
Sbjct: 141 RVAQGISQVALVKAIKSAFEIGAQNWLPENLPQVLLEKYRLLSRAKATAAMHFP---KDL 197

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKS 276
                A  R+ ++EL   Q+ L  ++   K E  G+ I   E K+A+KI   +PF  T  
Sbjct: 198 AEYKQALRRIKFEELFYFQMNLQALKADNKSEANGLAIAFDEKKMAEKIAA-LPFVLTGG 256

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+ ++ DIL DM     M R+LQGDVGSGKT+VA +AM AA  AG Q+ +M P  ILA+Q
Sbjct: 257 QKRSLSDILSDMRSGGHMNRLLQGDVGSGKTVVASLAMYAAYTAGFQSALMVPTEILAEQ 316

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+E + +   +  I   I+T  M  A ++ AL  IA G   +I+GTHAL QD++ Y++L 
Sbjct: 317 HFESLTQLFPDLSI--AILTSGMKSAAKKAALTAIADGSVDMIVGTHALIQDAVSYHRLG 374

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV QR    +K   P VL+MTATPIPRTL +T+ G++D+S I E PAGRK
Sbjct: 375 LVITDEQHRFGVNQRRIFREKGENPDVLMMTATPIPRTLAITAFGEMDVSIIDELPAGRK 434

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514
           PI T  +   +++ V++ +K  L +G +AY I P IEE +  + ++ +     L  +F  
Sbjct: 435 PIITRWVKHEQLEVVLDWVKKELQKGAQAYVISPLIEESESLDLKNAIALHEELSAYFDR 494

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           T+ ++++HGRM + +KE++M  FK    ++L++TTVIEVG++V +A+I+II +A+ FGL+
Sbjct: 495 TAEVSLMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMIIMDADRFGLS 554

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG++ S  IL+ +P  ++    R+ ++  T DGF++AE DLK R  GEI 
Sbjct: 555 QLHQLRGRVGRGQKQSYAILVANPK-TQTGKERMKIMTETTDGFVLAEADLKMRGSGEIF 613

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           G +QSG+P+F +A      ++LE AR+ A  I+++
Sbjct: 614 GTRQSGIPEFQVADIVEDYNILEEARRVASQIVSE 648


>gi|325127600|gb|EGC50520.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis N1568]
          Length = 680

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 340/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA +  
Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALFA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPLLIEQNPEI 662


>gi|288906074|ref|YP_003431296.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus UCN34]
 gi|306832113|ref|ZP_07465267.1| DNA helicase RecG [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|288732800|emb|CBI14376.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus UCN34]
 gi|304425552|gb|EFM28670.1| DNA helicase RecG [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 671

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 244/635 (38%), Positives = 365/635 (57%), Gaps = 25/635 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100
           DLL Y+P  + D   + ++SE+++     ITG +   ++ Q    KR      +  G   
Sbjct: 31  DLLLYYPFRYEDFKSK-RVSELADGEKAVITGTVVTPANVQYYGYKRNRLSFKIKQGEAV 89

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           I + FF +    L +    G  I + GK   LK+ +  +    I    +D   P    VY
Sbjct: 90  IAISFFNQP--YLADKVELGSDIAIFGKWDALKSAVTGMK---ILAQVEDDMQP----VY 140

Query: 161 SLPTGLSVDLFKKIIVEA--LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
            +  G+S +   K I  A  +     LPE + + LL K      A+A   +H P   KD 
Sbjct: 141 RVAQGISQNALVKAIKSAFEIGAQNWLPENLPQVLLDKYRLLGRAQATAAMHFP---KDL 197

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKS 276
                A  R+ ++EL   Q+ L  ++   K E  G+ I   E K+A KI   +PF+ T  
Sbjct: 198 AEYKQALRRIKFEELFYFQMNLQALKADNKSEANGLAIAYDEQKVADKIAA-LPFTLTGG 256

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  ++ DIL DM     M R+LQGDVGSGKT+VA +AM A   AG Q+ +M P  ILA+Q
Sbjct: 257 QRRSLDDILADMRSGGHMNRLLQGDVGSGKTVVASLAMYATYTAGFQSALMVPTEILAEQ 316

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+E + +      + + I+T  M  A ++ AL  IA G   +I+GTHAL QD++ Y++L 
Sbjct: 317 HFESLTQLF--PALSIAILTSGMKTAAKQAALSAIADGSVDMIVGTHALIQDAVTYHRLG 374

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV QR    +K   P VL+MTATPIPRTL +T+ G++D+S I E PAGRK
Sbjct: 375 LVITDEQHRFGVNQRRVFREKGENPDVLMMTATPIPRTLAITAFGEMDVSIIDELPAGRK 434

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PI T  +   +++ V++ +K  L +G +AY I P IEE +  + ++ V     L  +F  
Sbjct: 435 PIITRWVKHEQLEVVLDWVKKELQKGAQAYVISPLIEESESLDLKNAVALHEELSAYFAD 494

Query: 517 S--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           S  +A++HGRM + +KE++M  FK    ++L++TTVIEVG++V +A+I+II +A+ FGL+
Sbjct: 495 SATVALMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMIIMDADRFGLS 554

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG++ S  IL+ +P  ++    R+ ++  T DGF++AE DLK R  GEI 
Sbjct: 555 QLHQLRGRVGRGDKQSYAILVANPK-TQTGKERMKIMTETTDGFVLAEADLKMRGSGEIF 613

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           G +QSG+P+F +A      ++LE AR+ A  I+++
Sbjct: 614 GTRQSGIPEFQVADIVEDYNILEEARRVASQIVSE 648


>gi|325206697|gb|ADZ02150.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M04-240196]
          Length = 680

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 340/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHLPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662


>gi|315607375|ref|ZP_07882374.1| DNA helicase RecG [Prevotella buccae ATCC 33574]
 gi|315250932|gb|EFU30922.1| DNA helicase RecG [Prevotella buccae ATCC 33574]
          Length = 690

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 245/669 (36%), Positives = 378/669 (56%), Gaps = 26/669 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG +    LS+ +         + DL  Y+P  ++DR     I E++ +   V + G I
Sbjct: 5   GVGPRRKEILSRELGINT-----YGDLSEYYPYKYVDRSRLYTIDELTADMPFVQLKGRI 59

Query: 77  SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
                F +  R+   +   +DG G + L++F   T+ + + +  G    V GK      R
Sbjct: 60  LSFDEFVMGPRKKRIVAHFSDGHGVVDLVWF-NGTKYVYDSYKTGTDYIVFGKPGIFGGR 118

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLP--------TGLSVDLFKKIIVEALSRLPVLPE 187
              VHP     +   ++   ++  YS          T  S++   K ++E LS  P LPE
Sbjct: 119 YQFVHPDIDDASKLQLSEMGMQPYYSTTEKMKKANFTSRSIEKITKTLIEKLS--PQLPE 176

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +   +L +    S  +A   IH P+ A + +    AR RL ++EL   Q+ +L      
Sbjct: 177 TLPDFILNRLHLVSRPQALRWIHYPKNADEMQ---RARLRLKFEELFYVQLNILRYASDN 233

Query: 248 KKEI-GIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           +++  G   N  G I     R N+PF  T +Q+  + +I  DM    +M R+LQGDVGSG
Sbjct: 234 RRKYRGYVFNRVGDIFNGFYRHNLPFPLTGAQKRVMHEIRADMGSGRQMNRLLQGDVGSG 293

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KTLVAL++M  A++ G QA IMAP  ILA+QH   IK + +   I VE++TG +    R+
Sbjct: 294 KTLVALMSMLIALDNGFQACIMAPTEILAEQHLHTIKDFLKGMDIRVELLTGIVKGKKRK 353

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVL 424
           + L  +  G  HI +GTHAL +D++Q+ +L L +VDEQHRFGV QR KL  K    PHVL
Sbjct: 354 EVLAGLLDGSIHIAVGTHALIEDTVQFRQLGLAVVDEQHRFGVAQRAKLWAKNENPPHVL 413

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N+   + + ++  ++EG++
Sbjct: 414 VMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKYDNQTTSLYQGIRQQIAEGRQ 473

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543
            Y + P I+E ++ + +++ E + +L + F    ++ +HGRM   +KE  M  F  G  +
Sbjct: 474 VYIVFPLIKESEKMDLKNLEEGYEALKDVFPGYRMSKVHGRMKAAEKEEEMQKFVKGETQ 533

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ +  LS  
Sbjct: 534 ILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVTNYQLSAE 593

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKD 662
           +  R+ ++ +T DGF IAE DLK R  G++ G +QSG+   L IA       ++++AR +
Sbjct: 594 TRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQIIQLARDE 653

Query: 663 AKHILTQDP 671
           A+ I+  DP
Sbjct: 654 AQKIIEDDP 662


>gi|306834226|ref|ZP_07467346.1| DNA helicase RecG [Streptococcus bovis ATCC 700338]
 gi|304423799|gb|EFM26945.1| DNA helicase RecG [Streptococcus bovis ATCC 700338]
          Length = 671

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 246/636 (38%), Positives = 366/636 (57%), Gaps = 27/636 (4%)

Query: 43  DLLFYHPSSFIDRHYRPK-ISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTG 99
           DLL Y+P  + D  ++ K +SE+++     ITG +   ++ Q    KR      +  G  
Sbjct: 31  DLLLYYPFRYED--FKSKSVSELADGEKAVITGTVVTPANVQYYGYKRNRLSFKIKQGEA 88

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
            I + FF +    L +    G  I + GK   LK+ +  +    I    +D   P    V
Sbjct: 89  VIAISFFNQP--YLADKVEIGSDIAIFGKWDALKSAVTGMK---ILAQVEDDMQP----V 139

Query: 160 YSLPTGLSVDLFKKIIVEA--LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           Y +  G+S +   K I  A  +     LPE + + LL K      A+A   +H P   KD
Sbjct: 140 YRVAQGISQNALVKAIKSAFEIGAQNWLPENLPQVLLDKYRLLGRAQATAAMHFP---KD 196

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTK 275
                 A  R+ ++EL   Q+ L  ++   K E  G+ I   E K+A KI   +PF+ T 
Sbjct: 197 LAEYKQALRRIKFEELFYFQMNLQALKADNKSEANGLAIAYDEQKVADKIAA-LPFTLTG 255

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q  ++ DIL DM     M R+LQGDVGSGKT+VA +AM A   AG Q+ +M P  ILA+
Sbjct: 256 GQRRSLDDILADMRSGGHMNRLLQGDVGSGKTVVASLAMYATYTAGFQSALMVPTEILAE 315

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QH+E + +   +  I   I+T  M  A ++ AL  IA G   +I+GTHAL QD++ Y++L
Sbjct: 316 QHFESLTQLFPDLSI--AILTSGMKTAAKQAALSAIADGSVDMIVGTHALIQDAVTYHRL 373

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LVI DEQHRFGV QR    +K   P VL+MTATPIPRTL +T+ G++D+S I E PAGR
Sbjct: 374 GLVITDEQHRFGVNQRRVFREKGENPDVLMMTATPIPRTLAITAFGEMDVSIIDELPAGR 433

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           KPI T  +   +++ V++ +K  L +G +AY I P IEE +  + ++ V     L  +F 
Sbjct: 434 KPIITRWVKHEQLEVVLDWVKEELQKGAQAYVISPLIEESESLDLKNAVALHEELSAYFA 493

Query: 516 SS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
            S  +A++HGRM + +KE++M  FK    ++L++TTVIEVG++V +A+I+II +A+ FGL
Sbjct: 494 DSATVALMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMIIMDADRFGL 553

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           +QLHQLRGRVGRG++ S  IL+ +P  ++    R+ ++  T DGF++AE DLK R  GEI
Sbjct: 554 SQLHQLRGRVGRGDKQSYAILVANPK-TQTGKERMKIMTETTDGFVLAEADLKMRGSGEI 612

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            G +QSG+P+F +A      ++LE AR+ A  I+++
Sbjct: 613 FGTRQSGIPEFQVADIVEDYNILEEARRVASQIVSK 648


>gi|148997750|ref|ZP_01825314.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus
           pneumoniae SP11-BS70]
 gi|148999065|ref|ZP_01826496.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP11-BS70]
 gi|168575113|ref|ZP_02721076.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae MLV-016]
 gi|307068324|ref|YP_003877290.1| RecG-like helicase [Streptococcus pneumoniae AP200]
 gi|147755104|gb|EDK62160.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP11-BS70]
 gi|147756249|gb|EDK63291.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus
           pneumoniae SP11-BS70]
 gi|183578801|gb|EDT99329.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae MLV-016]
 gi|306409861|gb|ADM85288.1| RecG-like helicase [Streptococcus pneumoniae AP200]
          Length = 671

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 243/674 (36%), Positives = 385/674 (57%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +   +   +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASL---NGMKVLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERETD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMIETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEVWQEDPE 656


>gi|304388291|ref|ZP_07370407.1| DNA helicase RecG [Neisseria meningitidis ATCC 13091]
 gi|304337722|gb|EFM03875.1| DNA helicase RecG [Neisseria meningitidis ATCC 13091]
          Length = 680

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/600 (37%), Positives = 342/600 (57%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 TVKIAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I + P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSIIDQLPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEV
Sbjct: 483 SETLQLQTATETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662


>gi|325204743|gb|ADZ00197.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M01-240355]
          Length = 680

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEI 662


>gi|225848441|ref|YP_002728604.1| ATP-dependent DNA helicase RecG [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644626|gb|ACN99676.1| ATP-dependent DNA helicase RecG [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 801

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 226/662 (34%), Positives = 376/662 (56%), Gaps = 36/662 (5%)

Query: 45  LFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLL 104
           L+  P  + DR  + KI ++ +    T    +         K +   IL  D     + L
Sbjct: 127 LYNFPEKYEDRRVK-KILKVKDGETGTFYAQVEDIKKVNRGKLKVEVILRQDNVL-FSAL 184

Query: 105 FFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL-- 162
           FFY K   L   F +GR + + GK+   K    ++ P  +      ++   I  VYSL  
Sbjct: 185 FFYDKP-YLYTYFRKGRTVKLFGKVSVYKKNYSLIQPDLLEEKEDPID--TIAPVYSLRG 241

Query: 163 -----PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
                 TG +++  ++ + + + +   + ++I   +L+K +FP +++A   IH+P +  D
Sbjct: 242 DSSIKTTGQTINHLRRGMFKIVEKFSDVKDYIPNFILEKYNFPPLSKALKFIHHPDENTD 301

Query: 218 FE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            +    + +  ++RL +DEL   Q+A    +   ++     I V+    Q++ +N+PF  
Sbjct: 302 IDELNNFQNIHQKRLIFDELFLLQLAQKYRKALLQRNPSYNIKVKEDFLQEVEKNLPFQL 361

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q+  IK+IL D+ ++  M R++ GDVGSGKT+VA I+  A      Q+ +MAP  IL
Sbjct: 362 TNAQKRTIKEILSDLEKEVPMNRMVLGDVGSGKTVVAAISSLAVALNNYQSAVMAPTEIL 421

Query: 334 AQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           AQQHY     F+K Y ++ +I   ++TG++    ++K  + +  G   ++IGTHAL ++ 
Sbjct: 422 AQQHYNNFKNFLKPYLKDYEIA--LLTGSLSSTEKKKIYKAVESGIVKVVIGTHALLEEK 479

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           +++  L LV+VDEQHRFGV+QR  L +++   PHV++MTATPIPRTL L   GD+DISK+
Sbjct: 480 LKFKDLALVVVDEQHRFGVEQRKSLIERSEKKPHVMVMTATPIPRTLALAYYGDLDISKL 539

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            E P GRKP+KTVI+     D++   +K  L +G++ + + P I+E ++++ +S  E F 
Sbjct: 540 DELPKGRKPVKTVILFEKERDKLYSVIKQELEKGRQVFVVYPLIQESEKTDLKSAEEGFK 599

Query: 509 SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              E F    + ++HG+M   +K+ +M  FK G   +L++TTVIEVG+D+ +A++++IE 
Sbjct: 600 HYQEAFPDYKVVLLHGKMKQEEKDRIMQEFKEGKAHILVSTTVIEVGVDIPNATVMVIEE 659

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK------------NSYTRLSVLKNTE 615
           A  FGL+Q+HQLRGR+GRG+    C L+    LS+             +  RL +L  T 
Sbjct: 660 AHRFGLSQIHQLRGRIGRGQYEGYCFLMAPDELSQPQSDSSKEKSRLKALERLKILVKTN 719

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           +GF IAE+DL+ R  G+I G++QSG   F++A  +  + LLEIA K+A+ ++ QDP L+ 
Sbjct: 720 NGFEIAEKDLELRGAGDIAGVRQSGESGFILADLKRDEELLEIATKEAQEMINQDPTLSK 779

Query: 676 VR 677
            +
Sbjct: 780 YK 781


>gi|223933446|ref|ZP_03625431.1| ATP-dependent DNA helicase RecG [Streptococcus suis 89/1591]
 gi|330832178|ref|YP_004401003.1| ATP-dependent DNA helicase [Streptococcus suis ST3]
 gi|223897884|gb|EEF64260.1| ATP-dependent DNA helicase RecG [Streptococcus suis 89/1591]
 gi|329306401|gb|AEB80817.1| ATP-dependent DNA helicase [Streptococcus suis ST3]
          Length = 672

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 242/676 (35%), Positives = 381/676 (56%), Gaps = 30/676 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   LS   G+G K +    KI N  N N     DLL Y+P  + D   +  I ++ +  
Sbjct: 4   LCDELSVLPGIGPKSAEKFLKI-NIQNIN-----DLLTYYPFRYEDFESK-SIYDLQDGE 56

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              + G +   ++ Q    +  ++  +   GE+ L   +     L +    G+ I V GK
Sbjct: 57  KAVVVGEVVSPANVQYYGYKRNRLRFSMKQGEVVLAVSFFNQPYLADKIVLGQDIAVWGK 116

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    I     D     ++ VY +  G+S     K I  A+ +  L +L 
Sbjct: 117 WDKAKASLTGMK---ILAQVSDE----LQPVYHVAQGISQVNLVKAIKTAIDQGYLHLLE 169

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +   L ++    +  EA   +H P   +++     A  R+ ++EL   Q+ L +++  
Sbjct: 170 ENLPSVLRERYRLMNRREAVFAMHFPTNLEEYR---QALRRMKFEELFYFQLQLQMLKAN 226

Query: 247 FKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            +    G+ I  +       +R +PF  T +Q  A+ +IL DM     M R+LQGDVGSG
Sbjct: 227 NRDISNGLKIAYDADRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMNRLLQGDVGSG 286

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA IM P  ILA+QH+E +++     ++ + ++TG M  A RR
Sbjct: 287 KTVVAGLAMFAAVTAGMQAAIMVPTEILAEQHFESLRQLF--PELSIALLTGGMKAAERR 344

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
            ALE I+ GQ  II+GTHAL Q+S+ Y+KL LV+ DEQHRFGV+QR    +K   P VL+
Sbjct: 345 TALEAISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREKGDNPDVLM 404

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   ++  V++ L+  L  G + 
Sbjct: 405 MTATPIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWLERELEVGAQV 464

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ V+  + L  HF   + +  +HG+M + +K+++M +FK     
Sbjct: 465 YFISPLIEESEALDLKNAVDLQSDLQAHFGEQVTVDLLHGKMKNDEKDAIMQAFKERKTN 524

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 525 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK-TES 583

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR+ A
Sbjct: 584 GKERMKIMTETTDGFILAEADLKMRGSGEIFGTRQSGLPEFQVANIIEDYPILEEARRVA 643

Query: 664 KHILT-----QDPDLT 674
             I++     +DP+ +
Sbjct: 644 SQIVSVENWQEDPNWS 659


>gi|150025089|ref|YP_001295915.1| ATP-dependent DNA helicase RecG [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771630|emb|CAL43104.1| ATP-dependent DNA helicase RecG [Flavobacterium psychrophilum
           JIP02/86]
          Length = 701

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 260/705 (36%), Positives = 395/705 (56%), Gaps = 49/705 (6%)

Query: 6   LNPLF-APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +N LF  P+   +GVG +    L K +        ++ DL+ ++P+ ++DR    KISE+
Sbjct: 1   MNNLFETPIEYLKGVGPQRGDLLRKELGV-----YKYGDLINFYPNRYLDRTKYYKISEL 55

Query: 65  SEERI-VTITGYISQHSSFQLQKRRPYKI-LLNDGTGEITLLFF----YRKTEMLKNVFF 118
                 V I G +    S +  K +   +    D TG++ L++F    + K  +  NV +
Sbjct: 56  QNSSAEVQIIGKVIHIKSVEFAKGKSRLVATFIDDTGQMELVWFQGQKWVKESLKLNVVY 115

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNF---PLIEAVYSLPT-GLSVDLFK 172
                 + GK     N   M HP    +  + Q +     P+  +   L   G+S  +  
Sbjct: 116 -----VIFGKTTSFNNTFNMAHPEMELLSEHEQSIRLAMQPVYPSTEKLTNRGISNKVVN 170

Query: 173 KIIVEALSRLPVL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
           K++ +  S    L  E +   L+++    S  EA   IH P+ A   E  + A+ RL ++
Sbjct: 171 KMMQQLFSETHTLFSETLPIYLIEELKLISKKEALINIHFPKNA---EALAKAQFRLKFE 227

Query: 232 ELLAGQIALL---LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQD 287
           EL   Q+ L+   L+RK   K  G P +  G    +   N +PF+ T +Q+  +K+I  D
Sbjct: 228 ELFFIQLQLITKNLIRKHKIK--GFPFDKVGNYFTEFFNNHLPFNLTNAQKRVLKEIRND 285

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           M    +M R+LQGDVGSGKT+VA ++M  A++ G QA +MAP  ILA QH+  + + ++ 
Sbjct: 286 MGNPAQMNRLLQGDVGSGKTIVAFMSMLLALDNGFQACLMAPTEILANQHFIGLLELSKP 345

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             I ++I+TG+     R+   E + +G  HI+IGTHAL +D +Q+  L L I+DEQHRFG
Sbjct: 346 LNINIKILTGSSNTKARKIIHEELENGSLHILIGTHALLEDKVQFKNLGLAIIDEQHRFG 405

Query: 408 VQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           V+QR KL +K T  PHVL+MTATPIPRTL ++  GD+DIS I E P GRKPIKTV    +
Sbjct: 406 VEQRSKLWKKNTIPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPIKTV----H 461

Query: 467 RIDEVIERLKVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSS 517
           R D    RLKV       + +G++ Y + P I+E ++ +F+ +++ + SL   F     +
Sbjct: 462 RFDS--NRLKVWHFIREEIEKGRQIYIVYPLIQESEKMDFKDLMDGYESLSRDFPLPKYA 519

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I+I+HG+M   DKE+ M  F +G   +++ATTVIEVG++V +AS++IIE+AE FGL+QLH
Sbjct: 520 ISILHGKMKPADKEAEMKRFSDGKTNIMVATTVIEVGVNVPNASVMIIESAERFGLSQLH 579

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG + S CIL+    + ++S TR+  +  T DGF IAE DLK R  G+I+G +
Sbjct: 580 QLRGRVGRGADQSYCILMTSHKIGEDSKTRMETMVATNDGFEIAEVDLKLRGPGDIMGKQ 639

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           QSG+    IA       +L +AR  A  +L  D  +     Q++R
Sbjct: 640 QSGVLNLQIADLVRDKDILLLARNYALKLLKDDAPMEKPEHQTLR 684


>gi|291550315|emb|CBL26577.1| ATP-dependent DNA helicase RecG [Ruminococcus torques L2-14]
          Length = 686

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 237/672 (35%), Positives = 375/672 (55%), Gaps = 24/672 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           A + T +GVG+K      KI            DL+ Y+P  +        ISE+ E ++ 
Sbjct: 5   AGVGTIKGVGEKTEKLFEKI------GVYTVDDLIHYYPRGYEIFGEPVPISEVEEGKVC 58

Query: 71  TITGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           TI G +         K R+     L D TG I +++F  +   L+N       + + G++
Sbjct: 59  TICGSVFGRVQVSPGKGRQITTAYLKDLTGTIKVIWF--RMPFLRNTLGRKGAVVLRGRV 116

Query: 130 KKLKNRIIMVHPHYI---FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
            K ++ ++M HP          + +N   ++ VY L  GL+ +   K + +AL ++    
Sbjct: 117 VKKRDSLVMEHPEIYDPAVRYQEKIN--TMQPVYGLTAGLTNNAVIKALRQALEQVREQD 174

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245
           +++  +  +K  F    ++   +H P   + F     AR+R  ++E L   ++L  ++  
Sbjct: 175 DFLPDEFTKKYHFRPYEQSVREMHFPENKEAF---LAARQRFVFEEFLVFILSLRQIKNT 231

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           Q + + G     + +I++  LR +P+  T +Q     D+ +DM  +  M R++QGDVGSG
Sbjct: 232 QDRMKNGFHFEDQPQISE-FLRQLPYELTAAQLRVWDDMQKDMKSQYVMSRLVQGDVGSG 290

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV--EIITGNMPQAH 363
           KT+VA++ +  A   G Q  +MAP  +LA+QH+E IK   +  QI +  E++TG+M    
Sbjct: 291 KTIVAVLGLLFAGLNGYQGALMAPTEVLARQHFENIKDMLEQYQIPLRAELLTGSMKAKE 350

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R+A  RI  G++ IIIGTHAL Q+   Y+ L LV+ DEQHRFGV+QR  L  K   PH+
Sbjct: 351 KREAYARIESGESSIIIGTHALIQEKAIYHNLALVVTDEQHRFGVKQREMLAGKGNLPHI 410

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL +   GD+DIS I E P  R PIK  ++      +  E ++  +++G+
Sbjct: 411 LVMSATPIPRTLGIILYGDLDISVIDELPKNRLPIKNCVVDTGYRPKAYEFIRKQVAQGR 470

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGT 541
           + Y ICP +EE +     +V++    L E    SI +  +HG+M + +K+ VM++F    
Sbjct: 471 QCYVICPMVEESEAMEAENVIDYCEMLSETLGDSINVSFLHGKMKEKEKDEVMNAFGRNE 530

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVGIDV +A++I+IENAE FGLAQLHQLRGRVGRG+  S CI +     S
Sbjct: 531 IQVLVSTTVVEVGIDVPNATVIMIENAERFGLAQLHQLRGRVGRGKYQSYCIFMTASK-S 589

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           K +  RL +L ++ DGF IA EDL+ R  G++ GI+QSG+  F +A       LL+ A +
Sbjct: 590 KETKERLDILNHSNDGFFIASEDLRLRGPGDLFGIRQSGVLDFKVADVFQDAKLLQNASE 649

Query: 662 DAKHILTQDPDL 673
           +A  +L  DP L
Sbjct: 650 EADRLLLDDPKL 661


>gi|321315353|ref|YP_004207640.1| ATP-dependent DNA helicase RecG [Bacillus subtilis BSn5]
 gi|320021627|gb|ADV96613.1| ATP-dependent DNA helicase RecG [Bacillus subtilis BSn5]
          Length = 682

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 236/635 (37%), Positives = 365/635 (57%), Gaps = 19/635 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGE 100
           DLL Y P  + D   R  + E+  +  VT+ G +    S     +KR      L  G   
Sbjct: 33  DLLNYFPYRYDDYELR-DLEEVKHDERVTVEGKVHSEPSLTYYGKKRNRLTFRLLVGHYL 91

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           IT + F R    LK     G  +TV+GK  K +  I +        N        IE VY
Sbjct: 92  ITAVCFNRP--YLKKKLSLGSVVTVSGKWDKHRQNISVQE----LKNGPHQEDKSIEPVY 145

Query: 161 SLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           S+   ++V + ++ I +AL++    LP+ + + L +    P   +A   +H P      E
Sbjct: 146 SVKENVTVKMMRRFIQQALTQYADSLPDPLPEKLRKSYKLPDYYQALKAMHQPETR---E 202

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQE 278
               AR R  Y+E L  Q+ +   RK  +++  GI      +   + ++++PF  T +Q 
Sbjct: 203 ALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQGIRQRFSNEELMRFIKSLPFPLTNAQS 262

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +++I  DMS   RM R+LQGDVGSGKT VA IA+ AA+ +G Q  +M P  ILA+QH 
Sbjct: 263 RVLREITADMSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQHA 322

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +    +   + V ++T ++    R++ LER+A G+  I++GTHAL QD +++  L LV
Sbjct: 323 DSLVSLFEKWDVSVALLTSSVKGKRRKELLERLAAGEIDILVGTHALIQDEVEFKALSLV 382

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I DEQHRFGV+QR KL  K   P VL MTATPIPRTL +T  G++D+S I E PAGRK I
Sbjct: 383 ITDEQHRFGVEQRKKLRNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRI 442

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-- 516
           +T  +  + +D ++  ++  L +G++AY ICP IEE  + + ++ ++ +N L + F    
Sbjct: 443 ETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSDIFRGKW 502

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++ ++HG++   +K+ VM  F    C++L++TTV+EVG++V +A+I++I +A+ FGL+QL
Sbjct: 503 NVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLSQL 562

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRGE  S CIL+  P  S+    R+ ++  T DGF ++E+DL+ R  G+  G 
Sbjct: 563 HQLRGRVGRGEHQSFCILMADPK-SETGKERMRIMSETNDGFELSEKDLELRGPGDFFGK 621

Query: 637 KQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670
           KQSGMP+F +A   +HD   LE AR+DA +++  D
Sbjct: 622 KQSGMPEFKVADM-VHDYRALETARQDAANLVASD 655


>gi|312866410|ref|ZP_07726628.1| ATP-dependent DNA helicase RecG [Streptococcus downei F0415]
 gi|311098104|gb|EFQ56330.1| ATP-dependent DNA helicase RecG [Streptococcus downei F0415]
          Length = 677

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 240/634 (37%), Positives = 367/634 (57%), Gaps = 23/634 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100
           DLL Y+P  + D   R     +  E+ V +TG +   ++ Q    KR      +  G   
Sbjct: 37  DLLLYYPFRYEDFKARSVADLVDGEKAV-LTGTVVTPANVQYYGFKRNRLSFKIKQGEAV 95

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           I + FF +    L +    G+++ + GK   LK+ +  +    +    QD   P    VY
Sbjct: 96  IAVSFFNQP--YLADKIELGQEVALFGKWDALKSALTGMK---LLAQVQDDMQP----VY 146

Query: 161 SLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
            +  G+S +   K I  A     L  L E + + LL K        A   +H P   KD 
Sbjct: 147 HVAQGISQNALIKAIKAAFDSGALSELEENLPQALLAKYRLLDRQTAVRAMHFP---KDL 203

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
                A  R+ ++EL   Q+ L +++ Q K E  G+ I  + +  ++ ++ +PFS T +Q
Sbjct: 204 AQYKQALRRIKFEELFYFQLNLQVLKSQNKSETNGLAIPYKEQAVKQAIQQLPFSLTSAQ 263

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           E ++ ++L DM     M R+LQGDVGSGKT++A +AM AA  AG Q+ +M P  ILAQQH
Sbjct: 264 EQSLGEVLADMKSGAHMNRLLQGDVGSGKTVIASLAMFAAHTAGFQSALMVPTEILAQQH 323

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           +E + K   +  + V ++T  M  A ++ AL  IA G  ++I+GTH+L QD + Y+KL L
Sbjct: 324 FESLIKLFPD--LNVALLTVGMRPAVKKAALAGIADGSVNMIVGTHSLIQDGVSYHKLGL 381

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR    +K   P VL+MTATPIPRTL +T+ G++D+S I + PAGRKP
Sbjct: 382 VITDEQHRFGVNQRRVFREKGDNPDVLMMTATPIPRTLAITAFGEMDVSIIDQLPAGRKP 441

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--T 515
           I T  +   +++ V+  L+  +S+G +AY I P IEE +  + ++  +    L E F   
Sbjct: 442 IITRWVKHEQLETVLTWLQERISQGAQAYVISPLIEESESLDLKNAQDLHQELVEFFGNQ 501

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A++HGRM + +K+ +M  FK+G  ++L++TTVIEVG++V +++ III +A+ FGL+Q
Sbjct: 502 AQVALMHGRMKNDEKDQIMQDFKDGQSQVLVSTTVIEVGVNVPNSTAIIIMDADRFGLSQ 561

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG++ S C+L+ +P  ++    R+  +  T DGF++AEEDLK R  GEI G
Sbjct: 562 LHQLRGRVGRGDKQSYCVLVANPK-NEVGKRRMQAMCQTTDGFVLAEEDLKMRGSGEIFG 620

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            +QSG+P+F +A      ++LE ARK A  I+ Q
Sbjct: 621 TRQSGIPEFQVADIVEDYNILEEARKVASQIVAQ 654


>gi|115377219|ref|ZP_01464431.1| ATP-dependent DNA helicase RecG [Stigmatella aurantiaca DW4/3-1]
 gi|310821200|ref|YP_003953558.1| ATP-dependent DNA helicase RecG [Stigmatella aurantiaca DW4/3-1]
 gi|115365802|gb|EAU64825.1| ATP-dependent DNA helicase RecG [Stigmatella aurantiaca DW4/3-1]
 gi|309394272|gb|ADO71731.1| ATP-dependent DNA helicase RecG [Stigmatella aurantiaca DW4/3-1]
          Length = 898

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 243/700 (34%), Positives = 377/700 (53%), Gaps = 40/700 (5%)

Query: 6   LNPLFAPLST-FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           + P   PLST  + +GK+    L   ++       R  D+LF  P  + DR     I+E+
Sbjct: 197 IAPRSGPLSTPLKTLGKRLGPRLLGALD--KKGLRRVGDILFLLPRCYEDRRKLKTIAEL 254

Query: 65  SEE-RIVTI-----TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
               R VT+       Y+S  +      +R +K ++ D +G I   +F+     LKN F 
Sbjct: 255 EPGGRGVTVGLVKTADYVSGRNG-----KRYFKAVVADRSGSIAATYFH-AGPWLKNRFT 308

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHN---SQDVNFPLIEAVYSLPTGLSVDLFKKII 175
            G+++ ++G+++   +   M HP         S  V+F  I  +Y  P     D  ++  
Sbjct: 309 VGKRLVLSGEVRASLSGREMAHPEIEPAEDLESSSVHFNRIVPIY--PGFERGD--QRSF 364

Query: 176 VEALSRLP---------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW----TS 222
            E  SR+           LPE + K L       ++ EA   IH P      E      S
Sbjct: 365 REVASRVSENYAQHIEEPLPEALRKRL----GLVALPEALRSIHFPPDTAHLEALDAHQS 420

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
           P+  RLA+DEL   Q+ + L R+  K E GI  NV  +   +    +PF+ T +Q   ++
Sbjct: 421 PSHRRLAFDELFFLQLGMGLKRQNVKTEQGIAFNVSPERVDRARGALPFALTGAQARVVE 480

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           ++ QDM++   M R++QGDVGSGKT VA++A   A++ G Q  +MAP  ILA+QH    +
Sbjct: 481 ELAQDMARPEPMNRLVQGDVGSGKTAVAVVASLLALQDGYQVAVMAPTEILAEQHERSFR 540

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           K  +     V +++      H+R+  E +A G+ H+ +GTHAL Q  + + +L L ++DE
Sbjct: 541 KLLEPLGFRVGLVSAAGTAKHKREVREALAQGEIHLAVGTHALIQGGVAFERLGLAVIDE 600

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           QHRFGV QR  L  K   P VL+MTATPIPRTL +T  GD+D+S I E P GR P+ T +
Sbjct: 601 QHRFGVLQRHTLMSKGPTPDVLVMTATPIPRTLAMTLYGDLDVSIIDELPPGRTPVATRV 660

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAII 521
               +   V E +   +++G +AY + P +EE ++ +          L + F  + + ++
Sbjct: 661 FNEQQRARVYESVGAEIAKGHQAYIVYPLVEESEKLDLEDATRGAEKLQQVFPQARVGLL 720

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HGRM   +K++VM++F+     +L+ TTV+EVG+DV +AS++++E AE FGL+QLHQLRG
Sbjct: 721 HGRMKAEEKDAVMEAFREQRIHILVCTTVVEVGVDVPNASVMVVEAAERFGLSQLHQLRG 780

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           RVGRG  IS C L+     S  S  RL+V++ + DGF+IAE+DL+ R  GE LG +QSG+
Sbjct: 781 RVGRGAAISFCYLVASLARSWESSERLAVMEQSSDGFIIAEKDLEIRGPGEFLGTRQSGL 840

Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           P+  +A       LL +A+ +A+ IL +D  L +   Q +
Sbjct: 841 PELAVANLARDGDLLSLAQAEARRILERDAHLQAPEHQGL 880


>gi|161869430|ref|YP_001598597.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis 053442]
 gi|161594983|gb|ABX72643.1| DNA helicase [Neisseria meningitidis 053442]
          Length = 680

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/600 (37%), Positives = 340/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE  R+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQVREIAPMLIEQNPEI 662


>gi|16078650|ref|NP_389469.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221309462|ref|ZP_03591309.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221313787|ref|ZP_03595592.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221318711|ref|ZP_03600005.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221322982|ref|ZP_03604276.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|3914611|sp|O34942|RECG_BACSU RecName: Full=ATP-dependent DNA helicase recG
 gi|2337816|emb|CAA74246.1| putative RecG protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633959|emb|CAB13460.1| branch migrating ATP-dependent DNA helicase involved in DNA
           recombination and repair [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 682

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 236/635 (37%), Positives = 365/635 (57%), Gaps = 19/635 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGE 100
           DLL Y P  + D   R  + E+  +  VT+ G +    S     +KR      L  G   
Sbjct: 33  DLLNYFPYRYDDYELR-DLEEVKHDERVTVEGKVHSEPSLTYYGKKRNRLTFRLLVGHYL 91

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           IT + F R    LK     G  +TV+GK  K +  I +        N        IE VY
Sbjct: 92  ITAVCFNRP--YLKKKLSLGSVVTVSGKWDKHRQTISVQE----LKNGPHQEDKSIEPVY 145

Query: 161 SLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           S+   ++V + ++ I +AL++    LP+ + + L +    P   +A   +H P      E
Sbjct: 146 SVKENVTVKMMRRFIQQALTQYADSLPDPLPEKLRKSYKLPDYYQALKAMHQPETR---E 202

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQE 278
               AR R  Y+E L  Q+ +   RK  +++  GI      +   + ++++PF  T +Q 
Sbjct: 203 ALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQGIRQRFSNEELMRFIKSLPFPLTNAQS 262

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +++I  DMS   RM R+LQGDVGSGKT VA IA+ AA+ +G Q  +M P  ILA+QH 
Sbjct: 263 RVLREITADMSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQHA 322

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +    +   + V ++T ++    R++ LER+A G+  I++GTHAL QD +++  L LV
Sbjct: 323 DSLVSLFEKWDVSVALLTSSVKGKRRKELLERLAAGEIDILVGTHALIQDEVEFKALSLV 382

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I DEQHRFGV+QR KL  K   P VL MTATPIPRTL +T  G++D+S I E PAGRK I
Sbjct: 383 ITDEQHRFGVEQRKKLRNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRI 442

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-- 516
           +T  +  + +D ++  ++  L +G++AY ICP IEE  + + ++ ++ +N L + F    
Sbjct: 443 ETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSDIFRGKW 502

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++ ++HG++   +K+ VM  F    C++L++TTV+EVG++V +A+I++I +A+ FGL+QL
Sbjct: 503 NVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLSQL 562

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRGE  S CIL+  P  S+    R+ ++  T DGF ++E+DL+ R  G+  G 
Sbjct: 563 HQLRGRVGRGEHQSFCILMADPK-SETGKERMRIMSETNDGFELSEKDLELRGPGDFFGK 621

Query: 637 KQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670
           KQSGMP+F +A   +HD   LE AR+DA +++  D
Sbjct: 622 KQSGMPEFKVADM-VHDYRALETARQDAANLVASD 655


>gi|291287337|ref|YP_003504153.1| ATP-dependent DNA helicase RecG [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884497|gb|ADD68197.1| ATP-dependent DNA helicase RecG [Denitrovibrio acetiphilus DSM
           12809]
          Length = 761

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/622 (35%), Positives = 348/622 (55%), Gaps = 13/622 (2%)

Query: 85  QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
            ++R YK + +   G+   ++F         V  EG+K T+ G+         ++HP ++
Sbjct: 147 NRKRIYKAVFSGDFGQFAAVWFRFSAGYPAGVLKEGKKYTIYGQSGSFSGMESIIHPQFM 206

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIA 203
             +      P    VYSLP  ++  ++   +  AL + L  +P+ +   L +K  FPS  
Sbjct: 207 KESEMGNIIP----VYSLPKSVAQKVYYTAVNAALDKYLDQIPDHLPARLEEKYKFPSSK 262

Query: 204 EAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           +A   IH P+   + E  S    PA +R  Y+EL   Q+ LL  ++ ++++ G   +++ 
Sbjct: 263 QALLEIHRPKNPYELEALSEKRHPAAKRFIYEELFYLQMGLLYKKRAYERQSGTVFDIKK 322

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           +    I   +PF  T +Q   + +I  DMS   +M R++QGDVGSGKT+VA  A   AV+
Sbjct: 323 EYLDWIKDLLPFKFTGAQRRVMAEIFNDMSSTGQMNRLVQGDVGSGKTIVAFTAGLVAVK 382

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G Q  ++AP  +LA+QH   + K    T +   ++TG++  A ++   E IA G    +
Sbjct: 383 NGYQVAVIAPTEVLARQHMLNLLKLISGTNVTAVLLTGSVSGAEKKHTKELIAAGHVDFV 442

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHA+ Q+   + KL L I+DEQHRFGV+QR  L +K   P +LLMTATPIPRTL L+ 
Sbjct: 443 LGTHAVIQEDADFAKLGLAIIDEQHRFGVEQRKSLIEKGYMPDILLMTATPIPRTLALSF 502

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
            GD+DIS I E P GR PI TV      I+ V   ++  + +G   Y I P I+  ++ +
Sbjct: 503 YGDLDISIIDELPPGRTPINTV--SEKNIERVYPLMREEIKKGHGVYVIYPLIDTSEKLD 560

Query: 500 FRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  +    L + F   ++ ++HGRM    K  +MD+FK G  ++L++TTVIEVG+DV 
Sbjct: 561 LKAATDEHRKLSQEFGADNVGLLHGRMKHEQKSELMDAFKAGNIQVLVSTTVIEVGVDVP 620

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
            A++++IENAE FGL+QLHQLRGRVGR +  S C+L+    +S  +  R++ +    DGF
Sbjct: 621 HATVMVIENAERFGLSQLHQLRGRVGRSDRQSYCVLVASENVSDEASERINAMCAHADGF 680

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            ++E DL+ R  G+  G +QSG+P+F  +       +L+ AR DA  IL+ D DL+S + 
Sbjct: 681 KLSEIDLEMRGPGDFFGTRQSGLPEFRFSNIVRDVRILQDARSDAADILSDDQDLSSPKN 740

Query: 679 QSIRILLYLYQYNEAFQFIRAG 700
             I+ +L + ++    Q+I  G
Sbjct: 741 TVIKQVL-IRKWRSELQYIEIG 761


>gi|327489060|gb|EGF20855.1| DNA helicase RecG [Streptococcus sanguinis SK1058]
          Length = 671

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 237/667 (35%), Positives = 378/667 (56%), Gaps = 22/667 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+       ET   DLL Y P  + D   +  + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
             K K  +  +    +    +D   P+      +     V L K    + L  L  L E 
Sbjct: 116 WDKAKASLTGMK---LLAQVEDDLQPVYRLAQRISQASLVKLIKTAFDQGLDLL--LEEN 170

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           + + LL++    S  EA   +H P+   D++    A  R+ ++EL   Q+ L +++++ K
Sbjct: 171 LPQPLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLKRETK 227

Query: 249 K-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
               G+ I+ +        +++PF  T +QE ++ +ILQD+     M R+LQGDVGSGKT
Sbjct: 228 AVSNGLKIDWQSDAVAVKKKSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVGSGKT 287

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A RR+ 
Sbjct: 288 VVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAERRET 345

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  I  GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P VL+MT
Sbjct: 346 LAAIEKGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDVLMMT 405

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ GD+D+S I + PAGRKP+ T  +   +++ V++ LK  L +G + Y+
Sbjct: 406 ATPIPRTLAITAFGDMDVSIIDQMPAGRKPVITRWVKHEQLEVVLDWLKKELHKGAQVYF 465

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G   +L
Sbjct: 466 ISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDIL 525

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++  
Sbjct: 526 VSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-TESGK 584

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A  
Sbjct: 585 RRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVASQ 644

Query: 666 ILTQDPD 672
           I T DP+
Sbjct: 645 I-TADPN 650


>gi|288925182|ref|ZP_06419117.1| ATP-dependent DNA helicase RecG [Prevotella buccae D17]
 gi|288337947|gb|EFC76298.1| ATP-dependent DNA helicase RecG [Prevotella buccae D17]
          Length = 699

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 244/669 (36%), Positives = 377/669 (56%), Gaps = 26/669 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG +    LS+ +         + DL  Y+P  ++DR     I E++ +   V + G I
Sbjct: 14  GVGPRRKEILSRELGINT-----YGDLAEYYPYKYVDRSRLYTIDELTADMPFVQLKGRI 68

Query: 77  SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
                F +  R+   +   +DG G + L++F   T+ + + +  G    V GK      R
Sbjct: 69  LSFDEFVMGPRKKRIVAHFSDGHGVVDLVWF-NGTKYVYDSYKTGTDYIVFGKPGIFGGR 127

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLP--------TGLSVDLFKKIIVEALSRLPVLPE 187
              VHP     +   ++   ++  YS          T   ++   K ++E LS  P LPE
Sbjct: 128 YQFVHPDIDDASKLQLSEMGMQPYYSTTEKMKKANFTSRGIEKITKTLIEKLS--PQLPE 185

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +   +L +    S  +A   IH P+ A + +    AR RL ++EL   Q+ +L      
Sbjct: 186 TLPDFILNRLHLVSRPQALRWIHYPKNADEMQ---RARLRLKFEELFYVQLNILRYASDN 242

Query: 248 KKEI-GIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           +++  G   N  G I     R N+PF  T +Q+  + +I  DM    +M R+LQGDVGSG
Sbjct: 243 RRKYRGYVFNRVGDIFNGFYRHNLPFPLTGAQKRVMHEIRADMGSGRQMNRLLQGDVGSG 302

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KTLVAL++M  A++ G QA IMAP  ILA+QH   IK + +   I VE++TG +    R+
Sbjct: 303 KTLVALMSMLIALDNGFQACIMAPTEILAEQHLHTIKDFLKGMDIRVELLTGIVKGKKRK 362

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVL 424
           + L  +  G  HI +GTHAL +D++Q+ +L L +VDEQHRFGV QR KL  K    PHVL
Sbjct: 363 EVLAGLLDGSIHIAVGTHALIEDTVQFRQLGLAVVDEQHRFGVAQRAKLWAKNENPPHVL 422

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N+   + + ++  ++EG++
Sbjct: 423 VMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKYDNQTTSLYQGIRQQIAEGRQ 482

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543
            Y + P I+E ++ + +++ E + +L + F    ++ +HGRM   +KE  M  F  G  +
Sbjct: 483 VYIVFPLIKESEKMDLKNLEEGYEALKDVFPGYRMSKVHGRMKAAEKEEEMQKFVKGETQ 542

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ +  LS  
Sbjct: 543 ILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVTNYQLSAE 602

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKD 662
           +  R+ ++ +T DGF IAE DLK R  G++ G +QSG+   L IA       ++++AR +
Sbjct: 603 TRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQIIQLARDE 662

Query: 663 AKHILTQDP 671
           A+ I+  DP
Sbjct: 663 AQKIIEDDP 671


>gi|313669001|ref|YP_004049285.1| DNA helicase [Neisseria lactamica ST-640]
 gi|313006463|emb|CBN87926.1| putative DNA helicase [Neisseria lactamica 020-06]
          Length = 680

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/600 (37%), Positives = 340/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYAGHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +   G + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LRGNGVLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I + P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDKLPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMTRFSSGELNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662


>gi|148984139|ref|ZP_01817434.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus
           pneumoniae SP3-BS71]
 gi|225861521|ref|YP_002743030.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|147923428|gb|EDK74541.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus
           pneumoniae SP3-BS71]
 gi|225728405|gb|ACO24256.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|301800505|emb|CBW33144.1| ATP-dependent DNA helicase [Streptococcus pneumoniae OXC141]
 gi|327389882|gb|EGE88227.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA04375]
 gi|332200255|gb|EGJ14328.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA47368]
          Length = 671

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 240/663 (36%), Positives = 379/663 (57%), Gaps = 25/663 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ ++   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLDWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKTEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHI 666
            +I
Sbjct: 643 SYI 645


>gi|254468480|ref|ZP_05081886.1| ATP-dependent DNA helicase RecG [beta proteobacterium KB13]
 gi|207087290|gb|EDZ64573.1| ATP-dependent DNA helicase RecG [beta proteobacterium KB13]
          Length = 682

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 240/657 (36%), Positives = 366/657 (55%), Gaps = 31/657 (4%)

Query: 37  NETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLND 96
           N   + DLL + P  + DR     I ++ +     + G +        + +R   + L D
Sbjct: 17  NIQNWFDLLLHLPVRYEDRTKITDIQDLKDNAFSQVLGKVID-VDIVFRGKRNLVVHLED 75

Query: 97  GTGE---ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           G G+   +  L FY      K  F  G+ +   G ++K      ++HP     N+Q+V  
Sbjct: 76  GCGDQISLRYLHFYPNQ---KAQFKVGKYVLAAGNVRKNLITTEIIHPETAVFNAQEVVL 132

Query: 154 PL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP---SIAEAFNII 209
           P  +  +YS+ +GL      ++I +AL       + +  ++L  KS     ++ ++   I
Sbjct: 133 PENLTPIYSVTSGLGQKNIYRLINKAL-EFASSQKLLNFEILNHKSKTDGVNLLDSLYAI 191

Query: 210 HNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-IAQK 264
           H P K  D +    +++   + + Y ELL+ Q+ L L + +FK +      ++   +   
Sbjct: 192 HQPNKNCDLQELNYFSTIFHQHIKYAELLSQQLYLKLSKDEFKNQKSKIFTLKNNNLKDS 251

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           IL ++PF  T+SQE  I +I  DMS    M R+LQGDVGSGKT+VA+I     +    Q 
Sbjct: 252 ILNSLPFKLTESQEQVIHEIESDMSSGKVMHRLLQGDVGSGKTIVAIIVSTLILNNEYQV 311

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
             MAP  ILA QH++ IK+  Q+T + VE++TG++    R + ++ I  G+ H +IGTHA
Sbjct: 312 AFMAPTEILANQHFKKIKELFQSTDVRVELLTGSIKGRKRNEIIDDIESGKIHYVIGTHA 371

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSL 440
           LFQD+I + KL L I+DEQHRFGV+QRL L  K       PH+L+M+ATPIPRTL ++  
Sbjct: 372 LFQDNIYFKKLGLCIIDEQHRFGVKQRLDLMSKGKKDGHQPHLLMMSATPIPRTLSMSYF 431

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D+++S ++E P  R PI T ++  +R  E+++ LK  L+   + YW+CP +EE ++   
Sbjct: 432 ADLEVSTLSELPKDRVPIVTKLVRDSRRKELMQMLKNELNNDNQIYWVCPLVEESEKLTL 491

Query: 501 RSVVERFNSLHEHFTSSI-----AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              V  +    E F S I      IIHGRM D +K+ VM  +     KLL+ATTVIEVG+
Sbjct: 492 SDAVNTY----EEFISFIPKEMVGIIHGRMKDQEKDEVMSKYLQKKIKLLVATTVIEVGV 547

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +AS ++IE+AE  GL+QLHQLRGRVGRG + S+CIL++   LS+ +  RL ++   +
Sbjct: 548 DVPNASFMVIEHAERMGLSQLHQLRGRVGRGAKKSTCILIFKENLSELAKQRLKIIYENQ 607

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ-PELHDSLLEIARKDAKHILTQDP 671
           DGFLIAE DLK R  GE++G +QSG+P   IA   E  D + E++      I +  P
Sbjct: 608 DGFLIAENDLKIRGPGEMIGTRQSGVPGLRIANLVEDADLVKEVSDYSGNAIKSNKP 664


>gi|91214598|ref|ZP_01251571.1| ATP-dependent DNA helicase RecG [Psychroflexus torquis ATCC 700755]
 gi|91187025|gb|EAS73395.1| ATP-dependent DNA helicase RecG [Psychroflexus torquis ATCC 700755]
          Length = 700

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 247/682 (36%), Positives = 379/682 (55%), Gaps = 30/682 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG   +  L   ++  +     F +LL + P  +ID+    KISE+ +  
Sbjct: 6   LQTPIEYLKGVGPNRADLLKTELHIHS-----FQNLLEFFPFRYIDKSRFYKISELQDNS 60

Query: 69  I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V I G I+   +  +++ +       D TG I L++F     +L+NV      + + G
Sbjct: 61  AEVQIIGKITGVRTLPMKQGKRVVANFQDDTGSIELVWFRGHKWILENVNTNAPYV-IFG 119

Query: 128 KIKKLKNRIIMVHPHY-----IFHNSQDVNFPLIEAVYSLPT-GLSVDLFKKIIVEALSR 181
           K+        M HP           S    +P+  +   L   G+S  +   ++   L +
Sbjct: 120 KLNNFNGSFSMPHPEIEELEKAKTKSNVKMYPVYPSTEKLSKRGISNRMISTLMFGLLEQ 179

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
                E +   ++      S  EA   +H P+ +   E  + A+ RL ++E    Q+ LL
Sbjct: 180 SGNFSETLPSSIIADLKLISKTEAMINVHFPQSS---ELLAKAQFRLKFEEFFYIQLQLL 236

Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNI-PFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
                 K +I G      G+        + PF  T +Q+  +K+I +D+    +M R+LQ
Sbjct: 237 RKNAVHKSKIKGFRFKQVGEYFNAFYNTVLPFELTGAQKRVLKEIRKDLGSNAQMNRLLQ 296

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL++M  A++ G QA +MAP  ILA QHYE I +  +   + VEI+TG+ 
Sbjct: 297 GDVGSGKTIVALMSMLIAIDNGFQACLMAPTEILASQHYEGISELCEPIGVQVEILTGST 356

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            +  R+   ER+ +G+ HI+IGTHAL +D++++  + L ++DEQHRFGV QR KL +K T
Sbjct: 357 KKKDRKVLHERLQNGELHILIGTHALIEDTVKFKNIGLAVIDEQHRFGVAQRAKLWKKNT 416

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIER 474
             PHVL+MTATPIPRTL ++  GD+DIS I E P GRKPIKTV    +R D    +V + 
Sbjct: 417 LPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPIKTV----HRFDSNRLKVFKF 472

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKE 531
           +K  + +G++ Y + P IEE    +++ +++ + S+   F      I+I+HG+M   DK 
Sbjct: 473 IKDEVHKGRQVYIVYPLIEESANFDYKDLMDGYASIEREFPKPKYQISIVHGKMKPQDKA 532

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             M+ F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E S 
Sbjct: 533 YEMERFVKGKTQIMVATTVIEVGVNVPNASLMIIESAERFGLSQLHQLRGRVGRGAEQSY 592

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C+L+    LS +  TR+  L  T DGF IAE DLK R  G ++G +QSG+ +  IA    
Sbjct: 593 CVLITGKKLSADGKTRMETLTGTNDGFEIAEVDLKLRGPGNLMGTQQSGVLELKIADLVK 652

Query: 652 HDSLLEIARKDAKHILTQDPDL 673
            + +L+IAR  A H++  DP+ 
Sbjct: 653 DNQILKIARSYAHHVIKADPNF 674


>gi|328553517|gb|AEB24009.1| ATP-dependent DNA helicase RecG [Bacillus amyloliquefaciens TA208]
          Length = 682

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 229/637 (35%), Positives = 364/637 (57%), Gaps = 23/637 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF----QLQKRRPYKILLNDGT 98
           DLL Y P  + D   R  + E+  E  VT+ G +    S     + + R  +++L+  G 
Sbjct: 33  DLLNYFPYRYDDYELR-DLEEVKHEERVTVEGKVHSEPSLTYYGKKRNRLTFRVLV--GN 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             IT + F R    LK     G  +T++GK  K +  + +        N        IE 
Sbjct: 90  YLITAVCFNRP--YLKKKLTLGSVVTISGKWDKHRQTVSVQE----LKNGPHQEDKSIEP 143

Query: 159 VYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VYS+   ++V + ++ I EAL   L  + + + + L      P   +A   +H P   + 
Sbjct: 144 VYSVKENVTVKMMRRFIKEALKHHLDNIADPLPEKLRISYKLPDYKQALQTMHQPETRES 203

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKS 276
            +    AR R  Y+E L  Q+ +   RK  +++  GI      +       ++PFS T +
Sbjct: 204 LQ---QARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHVFPAEKLAAFTASLPFSLTNA 260

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   +++I  D++   RM R+LQGDVGSGKT VA I + AA+ +G Q  +M P  ILA+Q
Sbjct: 261 QMRVLREITADLTSPYRMNRLLQGDVGSGKTAVAAITLYAAILSGYQGALMVPTEILAEQ 320

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H + +     N  + + ++T ++    RR+ LER+A G+  I++GTHAL QD +++  L 
Sbjct: 321 HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALS 380

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV QR KL  K   P VL MTATPIPRTL +T  G++D+S I E PAGRK
Sbjct: 381 LVITDEQHRFGVDQRKKLRNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRK 440

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I+T  +  + ++ ++  ++  L +G++AY ICP IEE  + + ++ ++ +N L E +  
Sbjct: 441 QIETYWVKHDMLERILAFIEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSEVYRG 500

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             ++ ++HG++   +K+ VM  F    C++L++TTV+EVG++V +A+I++I +A+ FGL+
Sbjct: 501 KWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS 560

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG+  S CIL+  P  S+    R+ ++  T DGF ++E+DL+ R  G+  
Sbjct: 561 QLHQLRGRVGRGDHQSFCILMADPK-SETGKERMRIMSETNDGFELSEKDLELRGPGDFF 619

Query: 635 GIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670
           G KQSGMP+F +A   +HD   LE AR+DA ++++ +
Sbjct: 620 GKKQSGMPEFKVADM-VHDYRALETARQDAANLVSSE 655


>gi|332360531|gb|EGJ38341.1| DNA helicase RecG [Streptococcus sanguinis SK1056]
          Length = 671

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 239/665 (35%), Positives = 380/665 (57%), Gaps = 29/665 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+       ET   DLL Y P  + D   +  + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184
             K K  +  +    +    +D     ++ VY L  G+S    V L K    + L  L  
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDML-- 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL++    S  EA   +H P+   D++    A  R+ ++EL   Q+ L +++
Sbjct: 167 LEENLPQPLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ K    G+ I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVG
Sbjct: 224 RETKAVSNGLKIDWQLDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A 
Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDNLAQLF--PELKLALLTGGMKAAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR  L  I +GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P V
Sbjct: 342 RRAILSAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ LK  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G 
Sbjct: 462 QVYFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGR 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++   R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHI 666
            A  I
Sbjct: 641 VASQI 645


>gi|291484138|dbj|BAI85213.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. natto BEST195]
          Length = 682

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 236/635 (37%), Positives = 365/635 (57%), Gaps = 19/635 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGE 100
           DLL Y P  + D   R  + E+  +  VT+ G +    S     +KR      L  G   
Sbjct: 33  DLLNYFPYRYDDYELR-DLEEVKHDERVTVEGKVHSEPSLTYYGKKRNRLTFRLLVGHYL 91

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           IT + F R    LK     G  +TV+GK  K +  I +        N        IE VY
Sbjct: 92  ITAVCFNRP--YLKKQLSLGSVVTVSGKWDKHRQTISVQE----LKNGPHQEDKSIEPVY 145

Query: 161 SLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           S+   ++V + ++ I +AL++    LP+ + + L +    P   +A   +H P      E
Sbjct: 146 SVKENVTVKMMRRFIQQALTQYADSLPDPLPEKLRKSYKLPDYYQALKAMHQPETR---E 202

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQE 278
               AR R  Y+E L  Q+ +   RK  +++  GI      +   + ++++PF  T +Q 
Sbjct: 203 ALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQGIRQRFSNEELMRFIKSLPFPLTNAQS 262

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +++I  DMS   RM R+LQGDVGSGKT VA IA+ AA+ +G Q  +M P  ILA+QH 
Sbjct: 263 RVLREITADMSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQHA 322

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +    +   + V ++T ++    R++ LER+A G+  I++GTHAL QD +++  L LV
Sbjct: 323 DSLVSLFEKWDVSVALLTSSVKGKRRKELLERLAAGEIDILVGTHALIQDEVEFKALSLV 382

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I DEQHRFGV+QR KL  K   P VL MTATPIPRTL +T  G++D+S I E PAGRK I
Sbjct: 383 ITDEQHRFGVEQRKKLRNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRI 442

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-- 516
           +T  +  + +D ++  ++  L +G++AY ICP IEE  + + ++ ++ +N L + F    
Sbjct: 443 ETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSDIFRGKW 502

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++ ++HG++   +K+ VM  F    C++L++TTV+EVG++V +A+I++I +A+ FGL+QL
Sbjct: 503 NVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLSQL 562

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRGE  S CIL+  P  S+    R+ ++  T DGF ++E+DL+ R  G+  G 
Sbjct: 563 HQLRGRVGRGEHQSFCILMADPK-SETGKERMRIMSETNDGFELSEKDLELRGPGDFFGK 621

Query: 637 KQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670
           KQSGMP+F +A   +HD   LE AR+DA +++  D
Sbjct: 622 KQSGMPEFKVADM-VHDYRALETARQDAANLVASD 655


>gi|325141701|gb|EGC64160.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis 961-5945]
 gi|325197708|gb|ADY93164.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis G2136]
          Length = 680

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/600 (37%), Positives = 340/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAIGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE  R+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQVREIAPMLIEQNPEI 662


>gi|308389889|gb|ADO32209.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis alpha710]
 gi|325135657|gb|EGC58273.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M0579]
 gi|325201565|gb|ADY97019.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M01-240149]
 gi|325207546|gb|ADZ02998.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis NZ-05/33]
          Length = 680

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I IGTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAIGTHALFSDGVTFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I + P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDKLPPGRTPIKTRLVNNVRRAEVEGFVLNTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGELNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEI 662


>gi|270292353|ref|ZP_06198564.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M143]
 gi|270278332|gb|EFA24178.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M143]
          Length = 671

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 240/665 (36%), Positives = 377/665 (56%), Gaps = 29/665 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ ++ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184
             + K  +  +    +    +D     ++ VY L  G+S    V++ K    + L  L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQAGLVNVIKTAFDQGLDLL-- 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++
Sbjct: 167 IEENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLK 223

Query: 245 KQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + + +  G+ +N   +       N+PFS T +QE ++++IL DM   + M R+LQGDVG
Sbjct: 224 SENRVQGSGLVLNWSKEKVTAAKENLPFSLTPAQEKSLREILTDMKSDHHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM AAV AG QA +M P  ILA+QH+E ++    + ++   ++TG++  A 
Sbjct: 284 SGKTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPDLKLA--LLTGSLKAAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R+ LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P V
Sbjct: 342 KREVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRVLREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGS 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY I P IEE +  + ++ +     L  HF   + +A++HG+M   +K+ +M  FK   
Sbjct: 462 QAYVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKERK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  +
Sbjct: 522 TDILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 DSGKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARK 640

Query: 662 DAKHI 666
            A +I
Sbjct: 641 VASYI 645


>gi|317498522|ref|ZP_07956816.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894215|gb|EFV16403.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 676

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 230/667 (34%), Positives = 367/667 (55%), Gaps = 19/667 (2%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFID-LLFYHPSSFIDRHYRPKISEISEERIVTITG 74
            +G+G+K +    ++         R +D L+  +P  ++       ++EI   + V+I  
Sbjct: 10  LKGIGEKSATAFGRL-------GIRDVDSLITMYPKYYLTYEDPKDVNEIEIGQRVSIFV 62

Query: 75  YISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
            I+     Q  KR +       D TG I L+++      LK    +GR    TG      
Sbjct: 63  RINSEVHIQYAKRMKIVTCTAKDHTGTIMLVWY--NMPYLKKQLHQGRDYIFTGTPIYKN 120

Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
            RI M HP        +     ++ VY L +GL+  L  K + +    +  +PE++ +++
Sbjct: 121 GRITMEHPEIFTQEDYEAKQETLQPVYPLTSGLTNKLVSKAVAQTKDYIFHIPEYLPQNI 180

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIG 252
           L +       +A   IH P      E    A++RL +DE      A+ ++   +  KE G
Sbjct: 181 LDQYQPMEYHQAIWNIHFPESK---EQLIKAKKRLIFDEFFIFIAAMHMITSGEDLKEEG 237

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
             I V  K A+++++N+P+  T +Q+ A+ ++ +DM+    M R++QGDVGSGKT++A+I
Sbjct: 238 YKIGV-CKEAKELVKNLPYELTTAQKRALNEMAKDMASGKVMNRLVQGDVGSGKTILAVI 296

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            +    +AG Q V+MAP  +LA QHYE   +  ++  I + ++TG+     +R+  ++I 
Sbjct: 297 LLLMCAKAGYQGVLMAPTEVLAAQHYESFTELLESYDIKIALLTGSTKTKEKRETYQKIK 356

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            G+  I+IGTHA+ QD ++Y KL LVI DEQHRFGV+QR  L+ K   PHVL+M+ATPIP
Sbjct: 357 DGEVDIVIGTHAVIQDKVEYNKLALVITDEQHRFGVRQRESLSLKGKKPHVLVMSATPIP 416

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL +   GD+D+S I E PA R PIK  ++  +        ++  +S+G++ Y ICP +
Sbjct: 417 RTLAIILYGDLDVSIIDELPAERLPIKNCVVNTSYRPTAYRFIEKQVSQGRQVYIICPMV 476

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           EE +     +V++    L   F  S+ I  +HG+M   DK+ VMD F  G   +L++TTV
Sbjct: 477 EESETMEGENVIQYAQMLRSQFAPSVRISYLHGKMKAADKQKVMDDFSEGKIDVLVSTTV 536

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG++V +A+++++ENAE FGLAQLHQLRGRVGRG   S CI +      K +  RL V
Sbjct: 537 VEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGGYQSYCIFMTSSK-KKETMQRLEV 595

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           L  + DGF IA EDLK R  G+  G++QSGM  F++A    +  +++ A    K +    
Sbjct: 596 LNKSNDGFYIANEDLKLRGPGDFFGVRQSGMMDFVLADIYTNADIMKQAADAVKQLEESG 655

Query: 671 PDLTSVR 677
            D ++++
Sbjct: 656 FDFSNLK 662


>gi|255535594|ref|YP_003095965.1| ATP-dependent DNA helicase RecG [Flavobacteriaceae bacterium
           3519-10]
 gi|255341790|gb|ACU07903.1| ATP-dependent DNA helicase RecG [Flavobacteriaceae bacterium
           3519-10]
          Length = 696

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 244/695 (35%), Positives = 390/695 (56%), Gaps = 24/695 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE- 67
           L  P+   +G+G + + F+  ++           D L ++P  +ID+     I+++ EE 
Sbjct: 3   LDTPIEFLKGIGPERAKFIKNVLGIAMVE-----DFLTFYPIRYIDKSKLYFINDLKEEP 57

Query: 68  -RIVTITGYIS--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
              + + G I+  Q   +   K+R       D TG + L++F R ++ +K+       I 
Sbjct: 58  EAEIQLKGKITDLQEMGYGNGKKR-LSAKFRDETGTLELVWF-RYSKWMKDQLPLNTDIF 115

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVN---FPLIEAVYSLPT-GLSVDLFKKIIVEALS 180
           + GK+        M HP    +  + ++    P+      L   G++   F+ ++ E   
Sbjct: 116 IFGKVNLFNGTFSMAHPEIEINEKKALSGSLLPIYPGSEKLSKRGINNKFFQVVLAEITR 175

Query: 181 RLPVL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            LP L  E +   L++K    S   AF  IH P   KDF     A  R+ ++E    Q+ 
Sbjct: 176 NLPALIQENLPDALMKKLKLISRIHAFYHIHFP---KDFNHFEHANRRIKFEEAFFFQLG 232

Query: 240 LLLMRKQFKKEI-GIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
             L ++  K  + G P +  GK  +     ++PF  T +Q+  +K+I  DM +  +M R+
Sbjct: 233 YGLKKQHHKTSVVGNPFSKIGKNFKGFYEHSMPFELTNAQKRVLKEIRTDMKKPVQMNRL 292

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VAL+AM  A++ G Q+ +MAP  ILAQQH+  IK+ T+ T I + ++TG
Sbjct: 293 LQGDVGSGKTMVALLAMLIAMDNGFQSCLMAPTEILAQQHFNSIKELTEKTDIKIRLLTG 352

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           +   + R+   E +  G+  I++GTHA+ +D +++  L L I+DEQHRFGV QR +L  K
Sbjct: 353 STKTSDRKIIHEELLSGELTILVGTHAVLEDIVRFRNLGLAIIDEQHRFGVAQRARLWAK 412

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
              APH+L+MTATPIPRTL ++   D+D+S I E P GRKPI T          V    K
Sbjct: 413 NKIAPHILVMTATPIPRTLAMSFYSDLDVSVIDEMPVGRKPIITAHRREKDRLSVFRFAK 472

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMD 535
             + +G++ Y++ P IEE +  ++++++E ++ + E F    A ++HGRM   +KE+ M 
Sbjct: 473 DEIEKGRQVYFVYPLIEESETLDYKNLLENYDHIVEFFEGKNATMLHGRMKPAEKEAAMK 532

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E S CIL+
Sbjct: 533 YFASGKAEIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGGEQSYCILM 592

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
               L+K S TR+  +  T DGF I+E D++ R  G+ILG +QSG+  F         ++
Sbjct: 593 TSDKLTKESRTRVKTMTETNDGFKISEVDMQLRGPGDILGTQQSGVVDFKKLDLVADGTI 652

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
           +++A+K  + +L  DP L S   +S++   Y+ QY
Sbjct: 653 IQVAKKTVEVLLKHDPHLQSDENRSLKN-YYVKQY 686


>gi|254804394|ref|YP_003082615.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14]
 gi|254667936|emb|CBA04143.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14]
          Length = 680

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/600 (37%), Positives = 342/600 (57%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAIGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T P+ +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPSWQRLKFDELLAQQLSMRLARQKRIGGSATA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           ++ +G + Q +   +PF+ T +Q+  + +I +DM+Q   M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LSGDGTLTQALRHALPFALTDAQKKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   + V  ++G+  +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGCDVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662


>gi|55823618|ref|YP_142059.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus
           CNRZ1066]
 gi|55739603|gb|AAV63244.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 672

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 247/673 (36%), Positives = 389/673 (57%), Gaps = 34/673 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEE 67
           L +P++  +G G K +   +K+      +     DLL Y P  + D  ++ K I E+ + 
Sbjct: 4   LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYED--FKSKSIFELMDG 55

Query: 68  RIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               ITG +   ++ Q    KR      +  G   I + FF +    L + F  G ++ +
Sbjct: 56  EKAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAINFFNQP--YLVDKFEVGAEVAI 113

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-VDLFKKIIVEALS-RLP 183
            GK  + K+ +  +    + H   D     ++ VY +  G+S   L K I V   S  L 
Sbjct: 114 FGKWDRKKSAVTGMK--VLAHVEDD-----MQPVYHVAQGVSQAQLIKAIKVAFDSGALN 166

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           +L E + + L+ K       EA  ++H P   KD      A  R+ ++EL   Q+ L ++
Sbjct: 167 LLEESLPQVLMDKYRLMGRQEAVRVMHFP---KDLAEYKQALRRIKFEELFYFQMNLQVL 223

Query: 244 RKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           + + K E  G+ I+  E KI  KI   +PF  TK+QE ++ +IL DM     M R+LQGD
Sbjct: 224 KAENKSETNGLAISYDEVKIKAKIA-TLPFPLTKAQERSLSEILADMKSGAHMNRLLQGD 282

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT++A +AM  A  AG Q+ +M P  ILA+QHY+ +K      +++  ++T  M  
Sbjct: 283 VGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSLKGLFPELKVV--LLTSGMKM 340

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A ++ AL +I  G+A +I+GTH+L QD++ Y+KL LVI DEQHRFGV QR    +K   P
Sbjct: 341 ADKKVALSKIESGEAQMIVGTHSLIQDAVIYHKLGLVITDEQHRFGVNQRRIFREKGDNP 400

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL +T+ G++D+S I + PAGRK I T  +   ++D V+  +K  L +
Sbjct: 401 DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKTIITRWVKHEQLDTVLTWIKSELEK 460

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
             + Y+I P IEE +  + ++ V     L E F  ++++A++HGRM + +K+ +M  FK+
Sbjct: 461 DAQVYFISPLIEESESLDLKNAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKD 520

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L+ +P 
Sbjct: 521 KKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVLVANPK 580

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +     R+  +  T DGF++AEEDLK R  GEI G +QSG+P+F +A      ++LE A
Sbjct: 581 -NDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADTVEDYNILEEA 639

Query: 660 RKDAKHILTQDPD 672
           R+ A  I++ DP+
Sbjct: 640 RRVASQIVS-DPN 651


>gi|226224414|ref|YP_002758521.1| ATP-dependent DNA helicase recG [Listeria monocytogenes Clip81459]
 gi|225876876|emb|CAS05585.1| Putative ATP-dependent DNA helicase recG [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 682

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 242/680 (35%), Positives = 386/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWI 189
           K + ++           S++     +E VY L   L     +K    A +     + E I
Sbjct: 120 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFNSYSQDIEEVI 175

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248
             +LL+K       EA  I+H P   K+ E    AR R+ Y+E L  Q+ +   RK + +
Sbjct: 176 PSNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIERE 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT+
Sbjct: 233 KSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTV 292

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ L
Sbjct: 293 VASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELL 352

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 353 AMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMTA 412

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y I
Sbjct: 413 TPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYII 472

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F N     L+
Sbjct: 473 CPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNNKKIDCLV 532

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++    
Sbjct: 533 STTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGKE 591

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665
           R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+DA H
Sbjct: 592 RMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 651 MIFEEDMLENKNYEKLVALL 670


>gi|253751213|ref|YP_003024354.1| ATP-dependent DNA helicase [Streptococcus suis SC84]
 gi|253753114|ref|YP_003026254.1| ATP-dependent DNA helicase [Streptococcus suis P1/7]
 gi|253754936|ref|YP_003028076.1| ATP-dependent DNA helicase [Streptococcus suis BM407]
 gi|251815502|emb|CAZ51080.1| ATP-dependent DNA helicase [Streptococcus suis SC84]
 gi|251817400|emb|CAZ55136.1| ATP-dependent DNA helicase [Streptococcus suis BM407]
 gi|251819359|emb|CAR44751.1| ATP-dependent DNA helicase [Streptococcus suis P1/7]
 gi|292557775|gb|ADE30776.1| ATP-dependent DNA helicase RecG [Streptococcus suis GZ1]
 gi|319757485|gb|ADV69427.1| ATP-dependent DNA helicase [Streptococcus suis JS14]
          Length = 672

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 241/676 (35%), Positives = 382/676 (56%), Gaps = 30/676 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   LS   G+G K +    KI +  N N     DLL Y+P  + D   +  I ++ +  
Sbjct: 4   LCDELSVLPGIGPKSAEKFLKI-SIQNIN-----DLLTYYPFRYEDFESK-SIYDLQDGE 56

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              + G +   ++ Q    +  ++  +   GE+ L   +     L +    G+ I V GK
Sbjct: 57  KAVVVGEVVSPANVQYYGYKRNRLRFSMKQGEVVLAVSFFNQPYLADKIVLGQDIAVWGK 116

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    I     D     ++ VY +  G+S     K I  A+ +  L +L 
Sbjct: 117 WDKAKASLTGMK---ILAQVSDE----LQPVYHVAQGISQVNLVKAIKTAIDQGYLHLLE 169

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +   L ++    +  EA   +H P   +++     A  R+ ++EL   Q+ L +++  
Sbjct: 170 ENLPSVLRERYRLMNRREAVFAMHFPTNLEEYR---QALRRMKFEELFYFQLQLQMLKAN 226

Query: 247 FKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            +  + G+ I  +       +R +PF  T +Q  A+ +IL DM     M R+LQGDVGSG
Sbjct: 227 NRDILNGLKIAYDADRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMNRLLQGDVGSG 286

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA IM P  ILA+QH+E +++     ++ + ++TG M  A RR
Sbjct: 287 KTVVAGLAMFAAVTAGMQAAIMVPTEILAEQHFESLRQLF--PELSIALLTGGMKAAERR 344

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
            ALE I+ GQ  II+GTHAL Q+S+ Y+KL LV+ DEQHRFGV+QR    +K   P VL+
Sbjct: 345 TALEAISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREKGDNPDVLM 404

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   ++  V++ L+  L  G + 
Sbjct: 405 MTATPIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWLERELEVGAQV 464

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ V+  + L  HF   + +  +HG+M + +K+++M +FK     
Sbjct: 465 YFISPLIEESEALDLKNAVDLQSDLQAHFGEQVTVDLLHGKMKNDEKDAIMQAFKERKTN 524

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 525 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK-TES 583

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR+ A
Sbjct: 584 GKERMKIMTETTDGFILAEADLKMRGSGEIFGTRQSGLPEFQVANIIEDYPILEEARRVA 643

Query: 664 KHILT-----QDPDLT 674
             I++     +DP+ +
Sbjct: 644 SQIVSVENWQEDPNWS 659


>gi|309379638|emb|CBX21809.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 680

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/600 (37%), Positives = 341/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYAGHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGSAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +   G + Q + R +PF+ T +QE+ + ++  DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LRGNGVLTQALRRALPFALTDAQENVLAEVQTDMAQTHPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I + P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDKLPPGRTPIKTRLVNNVRRAEVEGFVLNTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGELNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662


>gi|325287658|ref|YP_004263448.1| ATP-dependent DNA helicase RecG [Cellulophaga lytica DSM 7489]
 gi|324323112|gb|ADY30577.1| ATP-dependent DNA helicase RecG [Cellulophaga lytica DSM 7489]
          Length = 701

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 253/693 (36%), Positives = 387/693 (55%), Gaps = 36/693 (5%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M P++L     P++  +GVG   +  L   +         + DLL   P+ ++D+    K
Sbjct: 1   MNPNYLQ---TPIAYLKGVGPSRAQTLQSELGV-----YTYQDLLNLFPNRYLDKTQYYK 52

Query: 61  ISEISEERI-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           IS++      V + G I        ++ +       D TG++ L++F R  + +K     
Sbjct: 53  ISQLQRNSAEVQVIGKIIHLKEVGQKRGKRLVATFVDDTGKMELVWF-RGQKWIKENIKL 111

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIF----HNSQDVN----FPLIEAVYS--LPTGLSVD 169
                + GK         M HP         N   V+    +P  E + +  +   ++  
Sbjct: 112 NVPYVIYGKTNWFNGTFSMPHPEMELLEDHKNGLKVSMQPIYPSSEKLTNKGITNKVTSK 171

Query: 170 LFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
           L +++ ++  ++    LP ++ K+L         ++A   IH P+  +D    + A+ RL
Sbjct: 172 LLQQLFIDTKAQFAETLPVYLLKEL----KLIGKSDALLNIHFPKSQQDL---AKAQFRL 224

Query: 229 AYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQ 286
            ++EL   Q+ L+  +   K +I G P N  G        N +PF  T +Q+  +K+I  
Sbjct: 225 KFEELFYIQLQLIAKKMVRKNKIKGFPFNAVGTYFSDFYNNYLPFELTNAQKRVVKEIRA 284

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           D+    +M R+LQGDVGSGKT+VAL+ M  A++ G QA +MAP  ILA QHY  I +  Q
Sbjct: 285 DLGSNAQMNRLLQGDVGSGKTIVALMTMLLALDNGFQACLMAPTEILATQHYNGITELLQ 344

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
             +I V ++TG++ ++ RR   E +  G+ HI+IGTHAL +D +QY  L L I+DEQHRF
Sbjct: 345 GLKIKVSLLTGSVKKSARRIIHEELESGELHILIGTHALLEDKVQYKNLGLAIIDEQHRF 404

Query: 407 GVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-IIP 464
           GV QR KL +K T  PH+L+MTATPIPRTL ++  GD+DIS I E P GRKPIKTV    
Sbjct: 405 GVAQRAKLWRKNTMPPHILVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPIKTVHRFD 464

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAII 521
            NR+ +V   LK  ++ G++ Y + P I+E +  +++ +++ + S+   F +    I+I+
Sbjct: 465 ANRL-KVFRFLKDEINIGRQVYVVYPLIKESEALDYKDLMDGYESIARDFPAPKYQISIV 523

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M   DKE  M  F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRG
Sbjct: 524 HGQMKPDDKEFEMQRFIKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRG 583

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           RVGRG + S CIL+    LS+++ TRL  +  T DGF IAE DLK R  G+I+G +QSG+
Sbjct: 584 RVGRGADQSYCILMTGHKLSEDAKTRLETMVRTNDGFEIAEVDLKLRGPGDIMGTQQSGV 643

Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
               IA     + +L+ AR  A  IL +DP L+
Sbjct: 644 LNLKIADIVKDNDILQTARHYAIKILKEDPSLS 676


>gi|313901534|ref|ZP_07834979.1| ATP-dependent DNA helicase RecG [Thermaerobacter subterraneus DSM
           13965]
 gi|313468195|gb|EFR63664.1| ATP-dependent DNA helicase RecG [Thermaerobacter subterraneus DSM
           13965]
          Length = 930

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 242/710 (34%), Positives = 378/710 (53%), Gaps = 55/710 (7%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG++ +  L+++     A      DLL++ P  + DR     I+ +    + T
Sbjct: 218 PLGRLPGVGRRQAQRLARL-GLHTAG-----DLLWHLPRRYEDRSTWKPIARLVPGEVAT 271

Query: 72  ITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           + G + +        +R   ++ ++DG+G +  +FF +   + +     GR + ++G+++
Sbjct: 272 VQGVVVAAQRVPTRTRRVVVRVTISDGSGRLDAVFFNQPFRLQQ--LPPGRPVRLSGRVE 329

Query: 131 KLKNRIIMVHPHYIF---HNSQDVNFPLIEAVYSLPTGLSVDLFKKI---IVEALS-RLP 183
                  M HP          + V+   I  VY    GL     +++   +V AL+ R+P
Sbjct: 330 AGYRGWQMDHPEVELLEGEGDEPVHTARIVPVYPATEGLHQRWLRQLAWQVVGALAGRVP 389

Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            +LPE + + L    +    A+A   IH P    D E    AR RLA++E    Q+AL  
Sbjct: 390 EILPEELRRQL----NLVERAQALRDIHFP---PDAEAWQAARRRLAFEEWFVMQVALAR 442

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R Q ++E G     +G    + L  +PF  T +Q   + +I  DM     M R++QGDV
Sbjct: 443 VRSQQQQEPGRAHRPDGPRVARFLAALPFELTPAQRRVLDEIRADMEAPRPMRRLVQGDV 502

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT++A  AM  AVE+G QA +MAP  ILA+QH   +++      I V ++ G+ P A
Sbjct: 503 GSGKTVIAAWAMVKAVESGAQAALMAPTEILAEQHARRLQQLLAPAGIPVVLLVGSQPAA 562

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R + L+ +A GQ  +++GTHAL Q+++++  L LVI+DEQHRFGV+QR  L  K   P 
Sbjct: 563 DRERVLQGLATGQWPVVVGTHALIQENVRFRDLGLVIIDEQHRFGVRQRALLQDKGRRPD 622

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+MTATPIPRTL LT  GD+D+S I + P GR+P++TV +   +  +  + L   ++ G
Sbjct: 623 LLVMTATPIPRTLALTLYGDLDVSVIDQLPPGRQPVRTVWLRGRQRRKAYDLLAARVAAG 682

Query: 483 KKAYWICPQIEEKKES------------------NFRSVVERFNSLHEHFTS-------- 516
           ++ Y +CP +++                               ++ H+  T+        
Sbjct: 683 EQGYVVCPLVDDPAAGPAGDGPGSGGQAAGGEGPAPGPGGAPEDAEHKAVTTWAEYVARR 742

Query: 517 ----SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                + I+HGRM   +KE VM +F+     +L+ATTVIEVG+DV +A+++IIE A+ FG
Sbjct: 743 YPRLRVGILHGRMPGPEKERVMRAFERRALDVLVATTVIEVGVDVPNATVMIIEGADRFG 802

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LAQLHQLRGRVGRG + S CIL+   P S     RL  L  ++ GF IAE DL+ R  G+
Sbjct: 803 LAQLHQLRGRVGRGSKESLCILVAD-PASAEGRMRLEALCRSQSGFDIAEFDLQLRGPGD 861

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
             G +Q G+P   IA P     LL +AR+ A+ +L +DP L +   +S+R
Sbjct: 862 FFGTRQHGLPALRIADPVKDAGLLRLAREAARRLLERDPGLDAPAHRSLR 911


>gi|253575788|ref|ZP_04853123.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844831|gb|EES72844.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 683

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 229/639 (35%), Positives = 369/639 (57%), Gaps = 17/639 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99
           DL+ Y+P  + D   R  ++E+ +   VT+   I      Q   R+     K++ +D   
Sbjct: 34  DLIEYYPFRYEDYRLR-SLTEVKDGDKVTVQAQIMGLPVLQRYGRKSRLTCKMIADDWM- 91

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
             T  +F R    LK+    GR+I +TGK    ++++ +      F +   +    ++ V
Sbjct: 92  -FTATWFNR--HFLKDQLTTGREIILTGKWDMRRSQLTVSESE--FPDRGTLRSGSLQPV 146

Query: 160 YSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           YS+   ++    +K I +AL +   ++PE +  +LL+K        A   +H P   +D 
Sbjct: 147 YSVGGKITQQWMRKTIGQALQQYGEMIPEILPPELLRKYGLMPRKTAILRLHQP---QDS 203

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
           E    AR R+ Y+EL   Q+ L   R    + + G+   V+    ++ +R++PF  T +Q
Sbjct: 204 EEGQQARRRMVYEELFLFQLKLQAYRAMNHERMDGVAHVVDNATIREFVRSLPFELTDAQ 263

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +IL+DM     M R+LQGDVGSGKT++A IA+ AAV++G Q   M P  ILA+QH
Sbjct: 264 KKVELEILKDMRSPYCMNRLLQGDVGSGKTVIAAIALYAAVKSGHQGTFMVPTEILAEQH 323

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
              + +  +   I V ++TG++    R+  L  +  G   I++GTHAL Q+ + +  L L
Sbjct: 324 MRSLSRLFEPFGITVGLLTGSVTGRKRKDLLGSLQMGLTDIVVGTHALIQEDVFFRSLSL 383

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ GD+D+S ++E+P GRKP
Sbjct: 384 VITDEQHRFGVNQRSILRRKGFNPDVLTMTATPIPRTLAITAFGDMDVSTLSERPKGRKP 443

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I T  +  + +D V+  ++  +S+G++AY ICP IEE  + + ++ ++ + S+ + F + 
Sbjct: 444 ITTYWVKHSMMDRVLGFIEREVSQGRQAYVICPLIEESDKLDVQNAIDLYVSMQQAFPNM 503

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            + ++HGRM+  +K+ VM +F     +LL++TTV+EVG+DV +A+++I+ +A+ FGL+QL
Sbjct: 504 KVGLLHGRMTAAEKDEVMRAFYENEVQLLVSTTVVEVGVDVPNATLMIVMDADRFGLSQL 563

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRGE  S C+L+  P  S+    R+ V+ +T+DGF +A  DL+ R  G+  G 
Sbjct: 564 HQLRGRVGRGEHASYCVLIADPK-SEVGQERMKVMTDTDDGFEVARRDLELRGPGDFFGT 622

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           KQSG+P F +A      ++LE AR DA  ++  +   TS
Sbjct: 623 KQSGVPDFRVADMVSDYAVLEAARDDAARLVAGEAFWTS 661


>gi|322412623|gb|EFY03531.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 671

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 247/668 (36%), Positives = 380/668 (56%), Gaps = 26/668 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP++  +G+G K +    K+         +  DLL Y+P  + D   +  +  +  E+
Sbjct: 3   LTAPIAHLKGLGPKSAEKFQKL------GIYQIEDLLLYYPFRYEDFKSKSVLELLDGEK 56

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            V ITG +    + Q    +  ++      GE+ +   +     L++    G ++ V GK
Sbjct: 57  SV-ITGTLVTPPNVQYYGFKRNRLTFKIKQGEVVIGVSFFNQPYLQDKLTLGNEVAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             + K  +  +    +    +D     ++ VY +  G+S     K I  A     L  L 
Sbjct: 116 WDQKKTALTGMK--LLMTVEED-----LQPVYHVAQGVSQTALIKAIKAAFDSGALDELK 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E I   LL+K        A   +H P+   D++    A  R+ ++ELL  Q+ L ++++ 
Sbjct: 169 ENIPNRLLEKYRLMPRQAAVYAMHFPKTLTDYK---QALRRIKFEELLYFQLRLQVLKQA 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + E  G+ I ++ +     +  +PF  T++QE ++++IL+DM     M R+LQGDVGSG
Sbjct: 226 NRSEDSGLAIALDQEKINHQIAALPFPLTQAQERSLQEILRDMRSGAHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT++A +AM AA  AG Q+ +M P  ILA+QHY+ + K   N  I   I+T  M    +R
Sbjct: 286 KTVIASLAMYAAYTAGLQSALMVPTEILAEQHYDSLIKLFPNLSI--AILTSGMKAPEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
             L  IA G   +I+GTHAL QD++QY+KL LVI DEQHRFGV+QR    +K   P VL+
Sbjct: 344 TTLAAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++D V+  +K  L +G +A
Sbjct: 404 MTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQQLDTVLAWMKTELEQGAQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ V     L  +F +S  IA++HG+M   +KE++M +FK     
Sbjct: 464 YVISPLIEESEALDLKNAVALEVELKAYFKASARIALMHGKMKADEKEAIMQAFKAQEID 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LL++TTVIEVG++V +ASI++I +A+ FGL+QLHQLRGRVGRG + S  IL+ +P  +++
Sbjct: 524 LLVSTTVIEVGVNVPNASIMVIMDADRFGLSQLHQLRGRVGRGYKQSYAILVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R++++  T DGF++AE DLK R  GEI G +QSG+P+F  A      ++LE ARK A
Sbjct: 583 GEERMTIMTTTNDGFVLAEADLKMRGAGEIFGTRQSGLPEFKTADIVEDYAILEEARKVA 642

Query: 664 KHILTQDP 671
             I T +P
Sbjct: 643 TMI-TSEP 649


>gi|46908043|ref|YP_014432.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|254826147|ref|ZP_05231148.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J1-194]
 gi|254933283|ref|ZP_05266642.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes HPB2262]
 gi|46881313|gb|AAT04609.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|293584843|gb|EFF96875.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes HPB2262]
 gi|293595387|gb|EFG03148.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J1-194]
 gi|328473539|gb|EGF44376.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes 220]
 gi|332312252|gb|EGJ25347.1| ATP-dependent DNA helicase recG [Listeria monocytogenes str. Scott
           A]
          Length = 682

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 243/680 (35%), Positives = 386/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWI 189
           K + ++           S++     +E VY L   L     +K    A  S    + E I
Sbjct: 120 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEVI 175

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248
             +LL+K       EA  I+H P   K+ E    AR R+ Y+E L  Q+ +   RK + +
Sbjct: 176 PSNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIERE 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT+
Sbjct: 233 KSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTV 292

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ L
Sbjct: 293 VASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELL 352

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 353 AMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMTA 412

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y I
Sbjct: 413 TPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYII 472

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F N     L+
Sbjct: 473 CPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNNKKIDCLV 532

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++    
Sbjct: 533 STTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGKE 591

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665
           R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+DA H
Sbjct: 592 RMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 651 MIFEEDMLENKNYEKLVALL 670


>gi|238022292|ref|ZP_04602718.1| hypothetical protein GCWU000324_02199 [Kingella oralis ATCC 51147]
 gi|237866906|gb|EEP67948.1| hypothetical protein GCWU000324_02199 [Kingella oralis ATCC 51147]
          Length = 681

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 234/638 (36%), Positives = 356/638 (55%), Gaps = 10/638 (1%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL  + P  + D  +   I+         + G +      Q + R+     + D  G + 
Sbjct: 29  DLALHLPLRYEDETHITPIAAAPIGETCQVEGEVVLQE-VQFKPRKQLIARIRDNAGGLL 87

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
            L F       +    +G+++   G+IK+      M+HP        ++   L   VY  
Sbjct: 88  NLRFIHFYPSQQQQLAKGQRVRALGEIKQGYYGAEMIHPKIKSPEKSELAQTLT-PVYPT 146

Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222
             GL+    +K I  AL  L  L E + + +L++ + P++A++  ++HNP  + +    S
Sbjct: 147 TNGLTQPTLRKAIAAALQHLD-LREILPESVLRQYNLPTLADSLRLLHNPPPSINLAQIS 205

Query: 223 ----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
               PA +RL +DELLA Q+++ L +++ +     P+   G +   ++  +PF  T++Q+
Sbjct: 206 NGALPAWQRLKFDELLAQQLSMRLAKQKRRSGSLKPLIGNGSLTDALIAQLPFGLTRAQQ 265

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-AGG-QAVIMAPIGILAQQ 336
               +I  D++Q + M R+LQGDVGSGKT+VA +A   A+E AGG QA +MAP  ILA+Q
Sbjct: 266 RVFNEIRADLAQPHPMHRLLQGDVGSGKTIVAALAALVALEDAGGFQAAVMAPTEILAEQ 325

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY   K++ +   I V  ++G++ +  + +A   IA G+  + IGTHALFQD + ++ L 
Sbjct: 326 HYIKFKQWLEPLGISVAWLSGSLKKRDKDQARAAIADGRIRLAIGTHALFQDDVAFHNLG 385

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++   D+D+S I E P  R 
Sbjct: 386 LVIVDEQHRFGVAQRLALKNKGQDVHQLMMSATPIPRTLAMSFFADLDVSTIDELPPNRT 445

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PIKT ++   R  EV   +     +G++AYW+CP IEE      ++  E    L      
Sbjct: 446 PIKTKLVNNVRRAEVEGFVLNTCQKGQQAYWVCPLIEESDSLQLKAATETLAELQAALPQ 505

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            +I ++HGRM   +K  +M  F  G+  +L+ATTVIEVG+DV +AS+++IE+AE  GLAQ
Sbjct: 506 LNIGLVHGRMKPAEKAEIMAQFVAGSLNVLVATTVIEVGVDVPNASLMVIEHAERMGLAQ 565

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S+C+LL+  PL +    RL V+    DGF IA +DL+ R  G+ LG
Sbjct: 566 LHQLRGRVGRGAAASTCVLLFAEPLGQVGKQRLKVIYENTDGFEIARQDLEIRGAGDFLG 625

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           ++QSG      A  E    LLE AR+ A  ++ Q P++
Sbjct: 626 VRQSGAMMLRFANLEQDLELLEHARQLAPLLIEQQPEI 663


>gi|325526988|gb|EGD04435.1| ATP-dependent DNA helicase RecG [Burkholderia sp. TJI49]
          Length = 564

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/539 (40%), Positives = 320/539 (59%), Gaps = 22/539 (4%)

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
           VY    G+S    +K I  AL R P+   LP  IE+  L+    PS+A+A  I+H+PR  
Sbjct: 10  VYPSTAGVSQAYLRKAIENALERTPLPELLPPEIERAYLKPLDVPSLADAVRILHHPRVD 69

Query: 216 KD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-----EGKIAQKIL 266
            D     + + PA  R+ ++ELLA Q++L    ++ +      +          +  ++ 
Sbjct: 70  SDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRAASDADALTTRLY 129

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             +PF  T +Q   + +I  D++  + M R+LQGDVGSGKT+VA +A A A++AG QA +
Sbjct: 130 AALPFRLTGAQSRVVDEIAHDLTLAHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAAL 189

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IGTHA+ 
Sbjct: 190 MAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAAIEAAALGTAQLVIGTHAII 249

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLVL 437
           QDS+++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL +
Sbjct: 250 QDSVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAQGFQPHQLMMSATPIPRTLAM 309

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           T   D+++S I E P GR P+ T ++   R DEVI R++     G++ YW+CP IEE + 
Sbjct: 310 TYYADLEVSTIDELPPGRTPVLTRLVGDARRDEVIARVREAALTGRQVYWVCPLIEESET 369

Query: 498 SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              ++ VE + +L        + ++HGR+S  DK +VMD+F     +LL+ATTVIEVG+D
Sbjct: 370 LQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAFTRNEVQLLVATTVIEVGVD 429

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL  ++ T D
Sbjct: 430 VPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSIAGRERLKTMRETTD 489

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           GF IA  DL+ R  GE LG +QSG      A  E    L+E AR+ A  ++   P++ +
Sbjct: 490 GFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIEPAREAAARLIAGYPEVVT 548


>gi|298492967|ref|YP_003723144.1| ATP-dependent DNA helicase RecG ['Nostoc azollae' 0708]
 gi|298234885|gb|ADI66021.1| ATP-dependent DNA helicase RecG ['Nostoc azollae' 0708]
          Length = 827

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 245/696 (35%), Positives = 388/696 (55%), Gaps = 35/696 (5%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCG---NANETRFI-----DLLFYHPSSFIDRHYR 58
            P+ A +S  R +G K    LS I   G     N  R       DLLFY+P   ID   +
Sbjct: 116 TPIVAEVS--RRLGPKIEQKLSDIAEIGIRKAENLARLDLLTVRDLLFYYPRDHIDYARQ 173

Query: 59  PKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKT----- 110
             I E+     VTI   + + + F   K +   IL   L D TG+I +  FY        
Sbjct: 174 VNIQELQGGETVTIIATVKRCNCFTSPKNKKLSILELMLKDNTGQIKVARFYAGARFSSR 233

Query: 111 ---EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPL----IEAVYSL 162
              E LK  +     I   G +K  K  + + +P   +  N  D    L    +  +Y+L
Sbjct: 234 AWQESLKRRYAVDSVIAACGLVKASKYGLTLDNPELEVLANPGDAINSLTIGRVVPIYAL 293

Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222
             G+  +  ++ ++ AL     L + +   L QK     + +    IH P   +D +   
Sbjct: 294 TEGVMANTVRQAVIAALPAAVNLKDPLPGGLRQKYGLMELKDGIANIHFP---EDSDTLK 350

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIAQKILRNIPFSPTKSQESA 280
            AR RL +DE    Q+ LL  R++  KEI     +  +GK+ ++    +PF  TK+Q+  
Sbjct: 351 TARRRLVFDEFFYLQLGLL-QRQRKAKEIQTSAVLAPKGKLLEQFNEILPFKLTKAQQRV 409

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I DIL D+ +   M R++QGDVGSGKT+VA++A+ AA+++G QA +MAP  +LA+QHY  
Sbjct: 410 INDILNDLQKPTPMNRLIQGDVGSGKTVVAVVAILAAIQSGYQAALMAPTEVLAEQHYRK 469

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           +  +     + VE++TG+     RR+   ++  G+  +++GTHAL QD + + +L LV++
Sbjct: 470 LVSWFNLLHLPVELLTGSTKTPKRREIHSQLETGELPLLVGTHALIQDKVNFQQLGLVVI 529

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQHRFGV+QR KL QK   PHVL MTATPIPRTL LT  GD+D+S+I E P GR+ I+T
Sbjct: 530 DEQHRFGVEQRAKLRQKGEQPHVLTMTATPIPRTLALTVHGDLDVSQIDELPPGRQQIQT 589

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--I 518
            ++   +  +  + ++  + +G++ Y + P +EE ++ + RS V+    L E       +
Sbjct: 590 TLLIGQQRHQAYDLMRREVVQGRQVYVVLPLVEESEKLDLRSAVDEHKKLQESVFPDFQV 649

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++HGRM+  +K+  +  F++   ++L++TTV+EVG+DV +A++I+IE+AE FGL+QLHQ
Sbjct: 650 GLLHGRMTSAEKDEAITKFRDNETQILVSTTVVEVGVDVPNATLILIEHAERFGLSQLHQ 709

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG   S C+L+     S ++  RL VL+ ++DGF I+E D++ R  GE++G +Q
Sbjct: 710 LRGRVGRGAAQSYCLLM-SSSRSADAQQRLKVLEQSQDGFFISEMDMRFRGPGEVMGTRQ 768

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           SG+  F +A     + +L +AR+ A+ ++  D  L 
Sbjct: 769 SGIADFTLASLVEDEDVLLLARQAAEKVIDMDVSLA 804


>gi|323353284|ref|ZP_08087817.1| DNA helicase RecG [Streptococcus sanguinis VMC66]
 gi|322121230|gb|EFX92993.1| DNA helicase RecG [Streptococcus sanguinis VMC66]
          Length = 671

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 239/665 (35%), Positives = 379/665 (56%), Gaps = 29/665 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+       ET   DLL Y P  + D   +  + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184
             K K  +  +    +    +D     ++ VY L  G+S    V L K    + L  L  
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL++    S  EA   +H P+   D++    A  R+ ++EL   Q+ L +++
Sbjct: 167 LEENLPQPLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMQLQVLK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ K    G+ I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVG
Sbjct: 224 RETKAVSNGLKIDWQLDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A 
Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  I  GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P V
Sbjct: 342 RRETLAAIEKGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ LK  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++ +     L  +F     +A++HG+M   +KE++M  FK G 
Sbjct: 462 QVYFISPLIEESEALDLKNAIALEEELTAYFGQQVQVALLHGKMKSEEKEAIMQDFKEGR 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++   R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHI 666
            A  I
Sbjct: 641 VASQI 645


>gi|261401307|ref|ZP_05987432.1| ATP-dependent DNA helicase RecG [Neisseria lactamica ATCC 23970]
 gi|269208687|gb|EEZ75142.1| ATP-dependent DNA helicase RecG [Neisseria lactamica ATCC 23970]
          Length = 680

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/600 (37%), Positives = 339/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + DG+G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYAGHQKQMAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP      S  +   L   +Y    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAESSGLAESLT-PIYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLE 182

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H P  +      S    PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHAPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRIGGSAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +   G + Q + R +PF+ T +QE+ + ++  DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LRGNGVLTQALRRALPFALTDAQENVLAEVQTDMAQTHPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGELNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+   L + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAESLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 662


>gi|254852719|ref|ZP_05242067.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL R2-503]
 gi|300763876|ref|ZP_07073873.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL N1-017]
 gi|258606040|gb|EEW18648.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL R2-503]
 gi|300515612|gb|EFK42662.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL N1-017]
          Length = 682

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 243/680 (35%), Positives = 386/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKIRVGETVTISGKWD 119

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWI 189
           K + ++           S++     +E VY L   L     +K    A  S    + E I
Sbjct: 120 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEVI 175

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248
             +LL+K       EA  I+H P   K+ E    AR R+ Y+E L  Q+ +   RK + +
Sbjct: 176 PSNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIERE 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT+
Sbjct: 233 KSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTV 292

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ L
Sbjct: 293 VASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELL 352

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 353 AMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMTA 412

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y I
Sbjct: 413 TPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYII 472

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F N     L+
Sbjct: 473 CPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNNKKIDCLV 532

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++    
Sbjct: 533 STTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGKE 591

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665
           R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+DA H
Sbjct: 592 RMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 651 MIFEEDMLENKNYEKLVALL 670


>gi|78188306|ref|YP_378644.1| ATP-dependent DNA helicase RecG [Chlorobium chlorochromatii CaD3]
 gi|78170505|gb|ABB27601.1| ATP-dependent DNA helicase RecG [Chlorobium chlorochromatii CaD3]
          Length = 706

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 234/648 (36%), Positives = 357/648 (55%), Gaps = 34/648 (5%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +GVG +      K +  G        DLL Y+P  ++DR    ++  + +  + T+ G 
Sbjct: 10  LKGVGSR------KAVVLGEVGIVTVDDLLAYYPRRYLDRRSIKRVRALVDGELTTVVGT 63

Query: 76  ISQHSSFQ-LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
           I +    Q    +  +K  L+DG+G + L +F R        F +G  + V GK+    N
Sbjct: 64  IVRTQLEQPTSGKARFKAWLDDGSGLLELTWF-RSVRYFSRFFTKGESLAVHGKVSFFGN 122

Query: 135 RIIMVHPHYIFHNSQDV--------NFPLIEAVYSLP----------TGLSVDLFKKIIV 176
           +  M HP Y     ++         +F L      +P           GL+    + +I 
Sbjct: 123 QAQMQHPDYDRLTPENAVGGEKGSDDFALFNTGAIIPLYHTTEAMKQAGLASRQLRVLIK 182

Query: 177 EALSRLPVLP-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
            AL  +P    E +   ++++       EA   IH P   +  E    AR RL + EL  
Sbjct: 183 RALEEVPFREQENLPLSIIRQYGLIPQWEAEREIHLPSSPEKLE---QARYRLKWTELFY 239

Query: 236 GQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
            Q+   L R   ++    +     G++ +K+  ++P+  T+ Q+ A++DI +D+   + M
Sbjct: 240 AQLLFALRRSTLRRNRAAVRFTHSGELTRKLHESLPYQLTEGQKQAVRDIYRDLRSGSPM 299

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVG+GKT+VA+ AMA AV+ G QA++MAP  ILA QH   +K++     I + +
Sbjct: 300 NRLLQGDVGAGKTMVAMFAMALAVDNGLQAMVMAPTEILAVQHALVMKRFFAPLGIELGL 359

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG   +  RR  LE++  G   +++GTHAL +  +QY    LVI+DEQHRFGV QR  L
Sbjct: 360 LTGKQGKKERRATLEKLRTGDMQLVVGTHALLEPDVQYANPGLVIIDEQHRFGVLQRKAL 419

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +KA  PHVLLMTATPIPRTL +   GD+D+S I +KP GR+PIKTV+        V   
Sbjct: 420 QEKAANPHVLLMTATPIPRTLSMGMFGDLDLSIIRDKPVGRQPIKTVLKKEQDKPSVYHF 479

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKES 532
           ++  ++ G++ Y I P +EE ++ + ++ VE +  L        SI +IHG+MS  +KE 
Sbjct: 480 VREQIAAGRQGYIIYPLVEESEKMDLKAAVESYEELSTAIFPDLSIGLIHGQMSPDEKEH 539

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM+ F+     +L+ TTVIEVG+DV +A+++IIE+AE FGLAQLHQLRGRVGRGE  S+C
Sbjct: 540 VMERFRQREFSILVGTTVIEVGVDVPNATVMIIEHAERFGLAQLHQLRGRVGRGEHPSTC 599

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           ILL    ++ ++  RL  + +T DGF+++E D K R  G +LG +QSG
Sbjct: 600 ILLT-AKMTADARERLLAMVSTNDGFVLSELDAKIRGVGNLLGKEQSG 646


>gi|222099455|ref|YP_002534023.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359]
 gi|221571845|gb|ACM22657.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359]
          Length = 750

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 238/646 (36%), Positives = 368/646 (56%), Gaps = 31/646 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL + P  + DR    K++E+   R VT  G IS     + Q       +L+DG   + 
Sbjct: 111 DLLEFFPRDYEDRRKVLKLNELIPGRKVTTQGKISSVEKKKFQNMNILVAVLSDGLMHVL 170

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH---YIFHNSQDVN------- 152
           L +F +   + +     G+++ VTG +K        ++P+   Y  HN++ +        
Sbjct: 171 LKWFNQDFLLTQLKQLVGKEVFVTGTVK--------LNPYTGQYEIHNAEVLPKEREIIR 222

Query: 153 --FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNII 209
             FP    +Y L +G+S    ++I  E +  L   L E + + +++K++  SI +A+  +
Sbjct: 223 RIFP----IYRLTSGISQKQMRRIFEENIPSLCCSLEETLPERIIKKRNLLSIKDAYYGM 278

Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
           H P+     E    ARERLAY+EL   Q+A   +R++ +K  GIP  +EG++A++ ++++
Sbjct: 279 HFPKTLHHLE---KARERLAYEELFTLQLAFQKVRREREKHGGIPKKIEGRLAEEFIKSL 335

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T +Q+ A ++I +DM  +  M R+LQGDVGSGKT+VA +A+    EAG QA  M P
Sbjct: 336 PFQLTGAQKRAHEEIRKDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQAAFMVP 395

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA QHY    +      I V ++ G    + + K    + +GQ  ++IGTHAL Q+ 
Sbjct: 396 TSILAIQHYRRTMESFSRFDIRVALLIGATSPSEKEKIKSGLKNGQIDLVIGTHALIQED 455

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L LVI+DEQHRFGV+QR  L  K      L+M+ATPIPR++ L   GD+D++ I 
Sbjct: 456 VHFKNLGLVIIDEQHRFGVRQREALMNKGRMVDTLVMSATPIPRSMALAFYGDLDVTVID 515

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           E P GRK ++T+++ ++R++EV E ++  + +G +A+ + P IEE  + + +S VE +  
Sbjct: 516 EMPPGRKEVQTILVSMDRVNEVYEFVRQEVMKGGQAFIVYPLIEESDKLSAKSAVEMYEY 575

Query: 510 L-HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           L  E F    + ++HG++S  +K+ VM  F  G   +L++TTVIEVGIDV  A++++IEN
Sbjct: 576 LSREVFPEFRVGLMHGKLSQEEKDRVMMEFAEGRYDILVSTTVIEVGIDVPRANVMVIEN 635

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E FGLAQLHQLRGRVGRG + + C L+    + + +  RL       DGF IAE DLK 
Sbjct: 636 PERFGLAQLHQLRGRVGRGGQEAYCFLVVG-DVGEEAMERLRFFTLNTDGFKIAEYDLKT 694

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           R  GE  G+KQ GM  F +A       LLE AR+D + I     DL
Sbjct: 695 RGPGEFFGLKQHGMSGFKVANLYKDLKLLEWAREDVREIDVDKIDL 740


>gi|294787729|ref|ZP_06752973.1| ATP-dependent DNA helicase RecG [Simonsiella muelleri ATCC 29453]
 gi|294484022|gb|EFG31705.1| ATP-dependent DNA helicase RecG [Simonsiella muelleri ATCC 29453]
          Length = 680

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 237/639 (37%), Positives = 359/639 (56%), Gaps = 9/639 (1%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL  + P  + D      I+      I  + G +  H   Q + R+     + D +G   
Sbjct: 29  DLALHLPLRYEDETQIIPIAAAPIGEICQVEGVVL-HQEIQFKPRKQLIARIKDDSGACL 87

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
            L F       +    +G  +   G+IK+      M+HP      +  +   L   +Y  
Sbjct: 88  NLRFIHFYPNHQKQLAQGATVRALGEIKRGFYGDEMIHPKLKSPENNKLAQSLT-PIYPT 146

Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222
             GL+    +K +  AL  +  L E + + LL+    PS+AE+   +HNP      +  +
Sbjct: 147 TNGLNQPTLRKAVQAALDAVD-LTEVLPEKLLKSLKLPSLAESLRTLHNPPPELSMQTLA 205

Query: 223 ----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
               PA +RL +DELLA Q+++ L R++ K     P+   G +++K+L N+PF  T +Q+
Sbjct: 206 DGAFPAWQRLKFDELLAQQLSMRLARQRRKSGNAKPLIGNGVLSKKLLANLPFRLTHAQQ 265

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-QAVIMAPIGILAQQH 337
               +I  D++    M R+LQGDVGSGKT+VA ++   A+E  G Q  IMAP  ILA+QH
Sbjct: 266 RVCDEIRADLANHVPMHRLLQGDVGSGKTIVAALSALVALECEGVQVAIMAPTEILAEQH 325

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           +   K++ +   I V  ++G++ +  + +A   +A+G+  +++GTHALFQD + +  L L
Sbjct: 326 FIKFKQWFETLGIRVAWLSGSLKKKAKDEAKAALANGEIRVVVGTHALFQDDVLFDNLGL 385

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VIVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ L D+D+S I E P  R P
Sbjct: 386 VIVDEQHRFGVAQRLALKNKGQDVHQLMMSATPIPRTLAMSFLADLDVSSIDELPPNRTP 445

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           IKT ++   R ++V   +     +G++AYW+CP IEE +    ++  +    L  H  S 
Sbjct: 446 IKTKLVNQLRRNDVEGFVLSTCQKGQQAYWVCPLIEESETLQLQTATDTLAELQNHLPSL 505

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           +I ++HGRM   +K +VM  F +G+  +L+ATTVIEVG+DV +AS+++IE+AE  GLAQL
Sbjct: 506 NIGLVHGRMKAAEKAAVMSEFISGSLNVLVATTVIEVGVDVPNASLMVIEHAERMGLAQL 565

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG   S+C+LL+  PL + S  RL V+    DGF IA +DL+ R  GE LG 
Sbjct: 566 HQLRGRVGRGAVASTCVLLFAEPLGQVSKARLKVIHEHTDGFEIARQDLEIRGPGEFLGA 625

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           +QSG P    A  +    LLE AR+ A  ++  +PD+ +
Sbjct: 626 RQSGAPMLRFADLQTDMVLLEQARQAAADLVAHEPDVVA 664


>gi|319764638|ref|YP_004128575.1| ATP-dependent DNA helicase recg [Alicycliphilus denitrificans BC]
 gi|317119199|gb|ADV01688.1| ATP-dependent DNA helicase RecG [Alicycliphilus denitrificans BC]
          Length = 705

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 238/668 (35%), Positives = 359/668 (53%), Gaps = 37/668 (5%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL  + P  + D      I    E   V + G ++  S  Q++ RR   + L DGT
Sbjct: 28  TRDIDLALHLPLRYEDETRITPIRSAREGETVQVEGTVTA-SEIQMRPRRQLVVTLEDGT 86

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
           G   L FF       K +   G ++   G+++       M+HP   F  ++      +  
Sbjct: 87  GSCELRFFSFYPSHQKAMAV-GERLRARGEVRGGFWGRQMLHP--AFRKAEGALPAALTP 143

Query: 159 VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNI------I 209
           VY     L     ++ +  AL+R  LP  LP  +E  L +  S   +   + +      +
Sbjct: 144 VYPTVAQLPQAYLRRAVASALARVDLPETLPPGLEPPLARFDSENGLHRPWGLRESLLFL 203

Query: 210 HNPRKAKDF------EWTSPARERLAYDELLAGQIALLLM---RKQFKKEIGIPINVEGK 260
           HNP  A D       + + PA +RL  +ELLA Q++ L+    R + +     P      
Sbjct: 204 HNP--APDVALATLQDHSHPAWQRLKAEELLAQQLSQLVSKRERARLRAPRLSPAPGAQA 261

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           + +++L  +PFS T +Q    ++I +D+++   M R+LQGDVGSGKT+VA +A A  ++A
Sbjct: 262 LHEQLLAALPFSLTAAQRRVGEEIARDLARAVPMHRLLQGDVGSGKTVVAALAAARCMDA 321

Query: 321 GGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           G Q  +MAP  ILA+QH+     ++          V  + G   +  R   LERIA G A
Sbjct: 322 GWQCALMAPTEILAEQHFAKLIGWLAPLLAARGQQVAWLAGGQKKKERAAMLERIASGGA 381

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMTATPIP 432
            +++GTHA+ Q+ +++  L L ++DEQHRFGV QRL L QK       PH+L+M+ATPIP
Sbjct: 382 ALVVGTHAVIQEQVRFRNLALAVIDEQHRFGVAQRLALRQKLQHDGMEPHLLMMSATPIP 441

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++   D+D+S I E P GR PI T +I  +R D+V+ER+   ++ G++ YW+CP I
Sbjct: 442 RTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDQVVERIGAQVAAGRQVYWVCPLI 501

Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           EE +  +  +       L E     ++ ++H RM   +K++VM+ FK+G   +L++TTVI
Sbjct: 502 EESEALDLSNATATHADLSEALPGVTVGLLHSRMPSAEKKAVMEEFKSGRTGVLVSTTVI 561

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTR 607
           EVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY       L + +  R
Sbjct: 562 EVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYSTGDSGRLGETARDR 621

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L  +  T DGF IA  DL+ R  GE LG +QSG      A      +LLE AR  A  +L
Sbjct: 622 LKAMAETTDGFEIARRDLEIRGPGEFLGARQSGDALLRFADLATDTALLEWARAAAPQML 681

Query: 668 TQDPDLTS 675
            +   L +
Sbjct: 682 DRHAALAA 689


>gi|116628420|ref|YP_821039.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus LMD-9]
 gi|116101697|gb|ABJ66843.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus LMD-9]
          Length = 672

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 247/673 (36%), Positives = 389/673 (57%), Gaps = 34/673 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEE 67
           L +P++  +G G K +   +K+      +     DLL Y P  + D  ++ K I E+ + 
Sbjct: 4   LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYED--FKSKSIFELMDG 55

Query: 68  RIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               ITG +   ++ Q    KR      +  G   I + FF +    L + F  G ++ +
Sbjct: 56  EKAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAINFFNQP--YLVDKFEVGAEVAI 113

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-VDLFKKIIVEALS-RLP 183
            GK  + K+ +  +    + H   D     ++ VY +  G+S   L K I V   S  L 
Sbjct: 114 FGKWDRKKSAVTGMK--VLAHVEDD-----MQPVYHVAQGVSQAQLIKAIKVAFDSGALN 166

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           +L E + + L+ K       EA  ++H P   KD      A  R+ ++EL   Q+ L ++
Sbjct: 167 LLEESLPQVLMDKYRLMGRQEAVRVMHFP---KDLAEYKQALRRIKFEELFYFQMNLQVL 223

Query: 244 RKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           + + K E  G+ I+  E KI  KI   +PF  TK+QE ++ +IL DM     M R+LQGD
Sbjct: 224 KAENKSETNGLAISYDEVKIKAKIA-TLPFPLTKAQERSLSEILADMKSGAHMNRLLQGD 282

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT++A +AM  A  AG Q+ +M P  ILA+QHY+ +K      +++  ++T  M  
Sbjct: 283 VGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSLKGLFPELKVV--LLTSGMKM 340

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A ++ AL +I  G+A +I+GTH+L QD++ Y+KL LVI DEQHRFGV QR    +K   P
Sbjct: 341 ADKKVALSKIESGEAQMIVGTHSLIQDAVIYHKLGLVITDEQHRFGVNQRRIFREKGDNP 400

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL +T+ G++D+S I + PAGRK I T  +   ++D V+  +K  L +
Sbjct: 401 DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKTIITRWVKHEQLDTVLTWIKSELEK 460

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
             + Y+I P IEE +  + ++ V     L E F  ++++A++HGRM + +K+ +M  FK+
Sbjct: 461 DAQVYFISPLIEESESLDLKNAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKD 520

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L+ +P 
Sbjct: 521 KKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVLVANPK 580

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +     R+  +  T DGF++AEEDLK R  GEI G +QSG+P+F +A      ++LE A
Sbjct: 581 -NDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEA 639

Query: 660 RKDAKHILTQDPD 672
           R+ A  I++ DP+
Sbjct: 640 RRVASQIVS-DPN 651


>gi|167765566|ref|ZP_02437630.1| hypothetical protein CLOSS21_00060 [Clostridium sp. SS2/1]
 gi|167712751|gb|EDS23330.1| hypothetical protein CLOSS21_00060 [Clostridium sp. SS2/1]
 gi|291559032|emb|CBL37832.1| ATP-dependent DNA helicase RecG [butyrate-producing bacterium
           SSC/2]
          Length = 676

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 230/667 (34%), Positives = 367/667 (55%), Gaps = 19/667 (2%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFID-LLFYHPSSFIDRHYRPKISEISEERIVTITG 74
            +G+G+K +    ++         R +D L+  +P  ++       ++EI   + V+I  
Sbjct: 10  LKGIGEKSATAFGRL-------GIRDVDSLITMYPKYYLTYEDPKDVNEIEIGQRVSIFV 62

Query: 75  YISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
            I+     Q  KR +       D TG I L+++      LK    +GR    TG      
Sbjct: 63  RINSEVHIQYAKRMKIVTCTAKDHTGTIMLVWY--NMPYLKKQLHQGRDYIFTGTPIYKN 120

Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
            RI M HP        +     ++ VY L +GL+  L  K + +    +  +PE++ +++
Sbjct: 121 GRITMEHPEIFTKEDYEAKQETLQPVYPLTSGLTNKLVSKAMAQTKDYIFHIPEYLPQNI 180

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIG 252
           L +       +A   IH P      E    A++RL +DE      A+ ++   +  KE G
Sbjct: 181 LDQYQPMEYHQAIWNIHFPESK---EQLIKAKKRLIFDEFFIFIAAMHMITSGEDLKEEG 237

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
             I V  K A+++++N+P+  T +Q+ A+ ++ +DM+    M R++QGDVGSGKT++A+I
Sbjct: 238 YKIGV-CKEAKELVKNLPYELTTAQKRALNEMAKDMASGKVMNRLVQGDVGSGKTILAVI 296

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            +    +AG Q V+MAP  +LA QHYE   +  ++  I + ++TG+     +R+  ++I 
Sbjct: 297 LLLMCAKAGYQGVLMAPTEVLAAQHYESFTELLESYDIKIALLTGSTKAKEKRETYQKIK 356

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            G+  I+IGTHA+ QD ++Y KL LVI DEQHRFGV+QR  L+ K   PHVL+M+ATPIP
Sbjct: 357 DGEVDIVIGTHAVIQDKVEYNKLALVITDEQHRFGVRQRESLSLKGEKPHVLVMSATPIP 416

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL +   GD+D+S I E PA R PIK  ++  +        ++  +S+G++ Y ICP +
Sbjct: 417 RTLAIILYGDLDVSIIDELPAERLPIKNCVVNTSYRPTAYRFIEKQVSQGRQVYIICPMV 476

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           EE +     +V++    L   F  S+ I  +HG+M   DK+ VMD F  G   +L++TTV
Sbjct: 477 EESETMEGENVIQYAQMLRSQFAPSVRISYLHGKMKAADKQKVMDDFSEGKIDVLVSTTV 536

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG++V +A+++++ENAE FGLAQLHQLRGRVGRG   S CI +      K +  RL V
Sbjct: 537 VEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGGYQSYCIFMTSSK-KKETMQRLEV 595

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           L  + DGF IA EDLK R  G+  G++QSGM  F++A    +  +++ A    K +    
Sbjct: 596 LNKSNDGFYIANEDLKLRGPGDFFGVRQSGMMDFVLADIYTNADIMKQAADAVKQLEESG 655

Query: 671 PDLTSVR 677
            D ++++
Sbjct: 656 FDFSNLK 662


>gi|212550469|ref|YP_002308786.1| ATP-dependent DNA helicase RecG [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548707|dbj|BAG83375.1| ATP-dependent DNA helicase RecG [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 707

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 249/670 (37%), Positives = 385/670 (57%), Gaps = 27/670 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERI--VTITGYISQHSSFQLQKRRPYKILLNDGTGE 100
           DLL+Y P  + DR    KISEI    +  + + G I ++      K R    + +DGTG 
Sbjct: 33  DLLYYFPYRYTDRSKIHKISEIDGRSMPFIQLKGKIFRYEYLGEGKSRRLSAVFDDGTGV 92

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK---------NRIIMVHPHYIFHNSQDV 151
           I L++F R    +  ++  GR+  + GK    +          RI ++HP     N    
Sbjct: 93  IELIWF-RSLTWITKMYKLGREYILFGKPSTFRLSTPSGSSLERISIIHPELEEENKFYE 151

Query: 152 NFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEA 205
               I+  YS         L     K++I+E L  +   L E + ++++ +    S+ EA
Sbjct: 152 GVIGIQGEYSTTEKMKKVSLHSRTIKQMIIEILENIKEPLSETLSREIINEYKLISLDEA 211

Query: 206 FNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQK 264
              IH P K+ D      A+ RL ++EL   Q+++L   K  +K I G      G+    
Sbjct: 212 IRNIHFP-KSNDL--LQEAQYRLKFEELFYLQLSILSAAKHREKHIDGFRFKEIGENFYF 268

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +  N+PF  T +Q+  + +I ++M+   +M R+LQGDVGSGKTL+AL+++  A + G Q 
Sbjct: 269 LKNNLPFELTTAQKRVVNEIWKNMNTGKQMNRLLQGDVGSGKTLIALLSILLATDNGFQG 328

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            IM P  +LA QHYE I +    + I V ++TG+     R + L ++  G+  I+IGTHA
Sbjct: 329 AIMVPTEVLAIQHYETISRMLNGSAIKVSLLTGSTKNKLREEMLPKVKSGEIQILIGTHA 388

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDI 443
           L +DS+++  L LV+VDEQHRFGV QR KL  K +  PHVL+MTATPIPRTL +T  GD+
Sbjct: 389 LIEDSVEFNNLGLVVVDEQHRFGVTQRAKLWNKNSNPPHVLVMTATPIPRTLAMTIYGDL 448

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           D+S I E P GRKP+ T      + D++ E ++  + +GK+ Y + P IEE ++ +  ++
Sbjct: 449 DVSIIDELPPGRKPVDTYHRYDEKRDKIYEYVRKEIQKGKQVYIVYPLIEENEKIDLTNL 508

Query: 504 VERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            + F ++ + F   +I ++HG+M   +K+  M  F +G  ++++ATTVIEVGIDV +AS+
Sbjct: 509 QDGFQAVSKVFPEYNICMVHGQMKPEEKKQEMQKFLSGEAQIMVATTVIEVGIDVRNASV 568

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           +II+NAE FGL+QLHQLRGRVGR  E + CIL+ +  LS+++  R++++ N  +GF+IAE
Sbjct: 569 MIIKNAERFGLSQLHQLRGRVGRSTEQAVCILMTNHELSEDARKRITIMTNFNNGFIIAE 628

Query: 623 EDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           EDLK R  G + GIKQSG    L IA+      +L+  R  A+ IL  DP+L   + Q+I
Sbjct: 629 EDLKLRGPGSLNGIKQSGFDSNLKIARLSQDGDILDYTRNLARRILDDDPNLE--KPQNI 686

Query: 682 RILLYLYQYN 691
            +  +L ++N
Sbjct: 687 LLKQHLNKWN 696


>gi|55821697|ref|YP_140139.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus LMG
           18311]
 gi|55737682|gb|AAV61324.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
          Length = 672

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 247/673 (36%), Positives = 389/673 (57%), Gaps = 34/673 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEE 67
           L +P++  +G G K +   +K+      +     DLL Y P  + D  ++ K I E+ + 
Sbjct: 4   LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYED--FKSKSIFELMDG 55

Query: 68  RIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               ITG +   ++ Q    KR      +  G   I + FF +    L + F  G ++ +
Sbjct: 56  EKAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAINFFNQP--YLVDKFEVGAEVAI 113

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-VDLFKKIIVEALS-RLP 183
            GK  + K+ +  +    + H   D     ++ VY +  G+S   L K I V   S  L 
Sbjct: 114 FGKWDRKKSAVTGMK--VLAHVEDD-----MQPVYHVAQGVSQAQLIKAIKVAFDSGALN 166

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           +L E + + L+ K       EA  ++H P   KD      A  R+ ++EL   Q+ L ++
Sbjct: 167 LLEESLPQVLMDKYRLMGRQEAVRVMHFP---KDLAEYKQALRRIKFEELFYFQMNLQVL 223

Query: 244 RKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           + + K E  G+ I+  E KI  KI   +PF  TK+QE ++ +IL DM     M R+LQGD
Sbjct: 224 KAENKSETNGLAISYDEVKIKAKIA-TLPFPLTKAQERSLSEILADMKSGAHMNRLLQGD 282

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT++A +AM  A  AG Q+ +M P  ILA+QHY+ +K      +++  ++T  M  
Sbjct: 283 VGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSLKGLFPELKVV--LLTSGMKM 340

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A ++ AL +I  G+A +I+GTH+L QD++ Y+KL LVI DEQHRFGV QR    +K   P
Sbjct: 341 ADKKVALSKIESGEAQMIVGTHSLIQDAVIYHKLGLVITDEQHRFGVNQRRIFREKGDNP 400

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL +T+ G++D+S I + PAGRK I T  +   ++D V+  +K  L +
Sbjct: 401 DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKTIITRWVKHEQLDTVLTWIKSELEK 460

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
             + Y+I P IEE +  + ++ V     L E F  ++++A++HGRM + +K+ +M  FK+
Sbjct: 461 DAQVYFISPLIEESESLDLKNAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKD 520

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L+ +P 
Sbjct: 521 KKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVLVANPK 580

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +     R+  +  T DGF++AEEDLK R  GEI G +QSG+P+F +A      ++LE A
Sbjct: 581 -NDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEA 639

Query: 660 RKDAKHILTQDPD 672
           R+ A  I++ DP+
Sbjct: 640 RRVASQIVS-DPN 651


>gi|293365912|ref|ZP_06612615.1| DNA helicase RecG [Streptococcus oralis ATCC 35037]
 gi|307702316|ref|ZP_07639274.1| ATP-dependent DNA helicase RecG [Streptococcus oralis ATCC 35037]
 gi|291315590|gb|EFE56040.1| DNA helicase RecG [Streptococcus oralis ATCC 35037]
 gi|307624119|gb|EFO03098.1| ATP-dependent DNA helicase RecG [Streptococcus oralis ATCC 35037]
          Length = 671

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 243/674 (36%), Positives = 382/674 (56%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQSLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  N+PFS T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTVVKENLPFSLTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    + ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPDLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD + Y  L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYACLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLIANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSMEGWKEDPE 656


>gi|305667019|ref|YP_003863306.1| ATP-dependent DNA helicase RecG [Maribacter sp. HTCC2170]
 gi|88709254|gb|EAR01488.1| ATP-dependent DNA helicase RecG [Maribacter sp. HTCC2170]
          Length = 701

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 257/689 (37%), Positives = 388/689 (56%), Gaps = 39/689 (5%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P++  +GVG   +  L      G    + + DLL   P+ +ID+    KI ++  
Sbjct: 4   NYLQTPITYLKGVGPNRAQTLQ-----GELGISTYQDLLNLFPNRYIDKTQYYKIGQLQR 58

Query: 67  ERI-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               V I G I +  + + +K +       D TGE+ L++F  +  + +N+      + +
Sbjct: 59  SNADVQIKGKIIRIKTVEQKKGKRLVATFIDETGEMELVWFRGQKWIRENLKLNTPYV-I 117

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPTGL-SVDLFKKIIVEALSRLP 183
            GK      +  M HP        +     L++ VY     L +  +  ++I + L +L 
Sbjct: 118 FGKCNWYSGKFSMPHPEMELLTEHEQGLKVLMQPVYPSTEKLGNSGITNRVINKLLQQLF 177

Query: 184 V-----LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           V       E +   LL      S +EA   IH P   K+ E+ + A+ RL ++EL   Q+
Sbjct: 178 VETKGKFMETLSDGLLHDLKLISKSEALFNIHFP---KNQEFLAKAQFRLKFEELFYIQL 234

Query: 239 ALL---LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRM 294
            L+   ++RKQ  K  G   +  G++  +  +N +PF  T +Q+  IK+I  DM    +M
Sbjct: 235 QLISKNMLRKQKIK--GFNFDQVGELFNEFFKNHLPFELTTAQKRVIKEIRADMGSNAQM 292

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVGSGKT+VAL+ M  A++ G QA +MAP  ILA QH+  IK+  Q+  + + +
Sbjct: 293 NRLLQGDVGSGKTIVALMTMLLAIDNGYQACLMAPTEILANQHFNGIKEQLQDIGVNIAL 352

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG++ ++ R    E++ +G+ HI+IGTHAL +D ++Y  L L IVDEQHRFGV QR KL
Sbjct: 353 LTGSIKKSARTIIHEQLENGELHILIGTHALLEDKVKYKNLGLAIVDEQHRFGVAQRSKL 412

Query: 415 TQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             K    PH+L+MTATPIPRTL ++  GD+DIS I E P GRK IKTV    +R D    
Sbjct: 413 WHKNEVPPHILVMTATPIPRTLAMSLYGDLDISVIDELPPGRKAIKTV----HRYDS--N 466

Query: 474 RLKVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGR 524
           RLKV       + +G++ Y + P I+E +  +++ +++ + S+   F      I+I+HG+
Sbjct: 467 RLKVFGFIKDEIKKGRQIYVVYPLIQESEALDYKDLMDGYESIARDFPLPDYQISIVHGK 526

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   DK+  M+ F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVG
Sbjct: 527 MKPADKDYEMERFVKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVG 586

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RG + S CIL+    LS  + TRL  +  T DGF IAE DLK R  G+I+G +QSG+   
Sbjct: 587 RGADQSYCILMTSFKLSSEAKTRLETMVRTNDGFEIAEVDLKLRGPGDIMGTQQSGVLNL 646

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDL 673
            IA     + +L+ AR  A  IL +DP L
Sbjct: 647 KIADIVKDNDILKTARWYAMKILKEDPSL 675


>gi|331269673|ref|YP_004396165.1| ATP-dependent DNA helicase RecG [Clostridium botulinum BKT015925]
 gi|329126223|gb|AEB76168.1| ATP-dependent DNA helicase RecG [Clostridium botulinum BKT015925]
          Length = 673

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 241/659 (36%), Positives = 379/659 (57%), Gaps = 30/659 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +++ +G+G K    L+K   CG     + +DLL Y P  +   HY   IS + +E  V I
Sbjct: 7   VASLKGIGPKTKELLNK---CG---IYKILDLLLYFPRDYEKIHYCNDISNLKDEDKVII 60

Query: 73  TGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
              + +       KR      ++      E    +F +K   +KN F    +  ++GK+K
Sbjct: 61  KAKVKEIKKDIYVKRNMVISTVIFTKNDLEFQGKWFNQK--YIKNKFKVNEEYIISGKVK 118

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
             K ++ +++P+ +    + +    I   YSL   L+ + F K I   LS + ++ E I 
Sbjct: 119 MDKYKVSIINPNILEDTEKLIG---ITPKYSLKGSLTNNFFNKTINYILSNITIV-ENIP 174

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           K++L K +  S+ ++   IH+P + ++  +   A +RL + EL    + LL++ KQ+KK 
Sbjct: 175 KNILDKYNLVSLDKSIRNIHHPTREEELLY---AMKRLKFQELFTYSLKLLML-KQYKKS 230

Query: 251 IGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
            GI   +  ++  KIL+ N+PF+ T +Q   +++IL D  +   M R++QGDVGSGKT+V
Sbjct: 231 KGIAFKISEEL--KILKENLPFTLTDAQNKVVREILIDEKRDRPMNRLVQGDVGSGKTIV 288

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +LIA+   V+ G Q V+MAP  ILA QHYE      +N  + +E++TG+  +    K   
Sbjct: 289 SLIALFNIVKNGYQGVLMAPTEILANQHYEQAINLFENFNVKIELLTGSTKKKDIIKG-- 346

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           ++  G+  ++IGTHAL +D +++  L +V+ DEQHRFGV+QR KL  K     VL+MTAT
Sbjct: 347 KLKSGEVDMVIGTHALLEDDVEFNNLGMVVTDEQHRFGVKQRSKLYNKNNNIDVLVMTAT 406

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L+  GD+DIS I + P GRK I T  +  N  + V       + +G + Y +C
Sbjct: 407 PIPRTLALSLYGDLDISTIDKLPPGRKKIDTFSVKENERNRVYNFALKKIKQGAQVYIVC 466

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           P +EE +E N +SV + +  L + + ++  + I+HG+M    K+ +M+ FK G  ++LI+
Sbjct: 467 PLVEENEELNVKSVEKLYMELKDKYFNNVEVEILHGKMPSKSKDEIMERFKMGKTEVLIS 526

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT- 606
           TTVIEVG++V +A+++IIE+AE FGL+QLHQLRGRVGRG++ S CIL+ +   S N  T 
Sbjct: 527 TTVIEVGVNVPNATLMIIESAERFGLSQLHQLRGRVGRGDKKSYCILITN---SSNDITK 583

Query: 607 -RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            R+ ++  + DGF IAEEDLK R  GEI G  Q G   F+I+       +   A K+AK
Sbjct: 584 QRMDIITKSNDGFFIAEEDLKLRGSGEIFGFNQHGENGFIISDVINDYGIFRNANKEAK 642


>gi|72161050|ref|YP_288707.1| ATP-dependent DNA helicase RecG [Thermobifida fusca YX]
 gi|71914782|gb|AAZ54684.1| ATP-dependent DNA helicase RecG [Thermobifida fusca YX]
          Length = 733

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 240/720 (33%), Positives = 383/720 (53%), Gaps = 75/720 (10%)

Query: 15  TFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74
           + R VG + +  L+  +           DLL ++P  +  R     +  + E   VT+  
Sbjct: 7   SLRVVGDRTAKVLASALGLHTVG-----DLLRHYPRRYDRRGELTDLDGLVEGEQVTVLA 61

Query: 75  YISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            +   +   +++RR    ++++ DG G ++LLFF+R     ++    GR+    GK+   
Sbjct: 62  EVLTCTVRPMRQRRGSILEVVVTDGRGRLSLLFFHR-VGWHRDRLLPGRRGLFAGKVSVY 120

Query: 133 KNRIIMVHPHYIFHNSQDVN--------------FPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + R  + HP Y    S D                +P  E + S           K +   
Sbjct: 121 RGRRQLAHPEYELFESDDAIQERARTYADTLIPIYPATEKITSWK-------IAKAVATV 173

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L  L  LP+ +  DL  +    S++EA+ +IH P   KD++    AR+RL +DE    Q+
Sbjct: 174 LDILGDLPDPLPADLRARHGLVSLSEAYRLIHTP---KDWDDVRAARKRLKWDEAFVIQV 230

Query: 239 ALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           AL   R+  +++   P   + G I      N+PF+ T  Q    + I  D++  + M R+
Sbjct: 231 ALAQRRRTAQRQPAQPRPRISGGILDAFDANLPFTLTDGQREVGEVISADLASDHPMHRL 290

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQII-- 351
           LQGDVG+GKTLVAL AM   V+AGGQA ++AP  +LAQQH+    E +    +  Q+   
Sbjct: 291 LQGDVGAGKTLVALRAMLQVVDAGGQAALLAPTEVLAQQHHRSITEMLGPLARAGQLDGA 350

Query: 352 -----VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
                V ++TG++  A RR+AL   A G+A I+IGTHAL Q+ + +  L LV++DEQHRF
Sbjct: 351 EQATRVALLTGSLGAAARREALLDAASGRAGIVIGTHALLQEQVTFADLGLVVIDEQHRF 410

Query: 407 GVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           GV+QR  L  K+T   PHVL+MTATPIPRT+ +T  GD+D+  + + PAGR PI T ++P
Sbjct: 411 GVEQRDALRDKSTRGRPHVLVMTATPIPRTVAMTVYGDLDVVALRQLPAGRSPIATHVVP 470

Query: 465 INR----IDEVIERLKVVLSEGKKAYWICPQI---EEKKESNFR---------------- 501
                  +    ER++  +++G++AY +CP+I    E  E N R                
Sbjct: 471 SRDKPHYLARAWERIREEVAQGRQAYIVCPRIGGEAEDPEENGRLFAEPDGGETAGRRAP 530

Query: 502 -SVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            +VV+    + +   + +  A +HGR++  +K+ VM +F  G   +L+ATTV+EVG++V 
Sbjct: 531 LAVVDLLAEVEQGPLAGLRLAALHGRLAPDEKDKVMRAFAAGEIDVLVATTVVEVGVNVP 590

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++I +A+ FG++QLHQLRGRVGRG     C+L+        +  RL  + +T DGF
Sbjct: 591 NATVMMIMDADRFGVSQLHQLRGRVGRGSLPGLCLLVTEAEEGSPARRRLDAVASTTDGF 650

Query: 619 LIAEEDLKQRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            ++  DL+QR+EG+ILG+ QSG     + L    E  + L+  AR +A  ++  DP+L+ 
Sbjct: 651 ALSRLDLEQRREGDILGVAQSGRSGTLRLLTITHEQDEELIGQARAEATALVDADPELSD 710


>gi|327441097|dbj|BAK17462.1| RecG-like helicase [Solibacillus silvestris StLB046]
          Length = 679

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 247/665 (37%), Positives = 378/665 (56%), Gaps = 29/665 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEERIV 70
           P+S  +G+GK+ +  L KI       ET   DL++  P    D  +R K ++E      V
Sbjct: 5   PVSHLKGIGKETAENLMKI-----GIET-IHDLIWTFPYRHED--FRLKDLTETPHNERV 56

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           TI   +    +     +   ++      G   I ++FF +    L+     G  ITVTGK
Sbjct: 57  TIEARVESEPTVLFLGKNKSRLQFTALAGRHLIKVVFFNQN--YLRQKISTGGIITVTGK 114

Query: 129 IKKLKNRIIMVHPHYIFH-NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLP 186
             +   R ++V     F   ++ V+F   E VYSL   +    F+K + +AL  +   LP
Sbjct: 115 WDR--GRQVIVGSSVTFGPKTEQVDF---EPVYSLKGNIQQKRFRKYMRQALDTVKEELP 169

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +   L +     +I EA   +H P  A   +    AR R  Y+ELL  Q+ +  +RK 
Sbjct: 170 ETLPNYLRESYQLVNIQEALEGVHFPLNA---DHAKQARRRFVYEELLQFQLRIQALRKA 226

Query: 247 FKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K+ E GI +  + +  +  +  +P+  T +Q+  + +I +DM    RM R+LQGDVGSG
Sbjct: 227 NKENEKGISVRFDLEKLKAFITTLPYELTGAQKRVVNEICKDMLLPQRMNRLLQGDVGSG 286

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA I + AAV AG Q  +MAP  ILA+QH E +  +     + + +++G+     RR
Sbjct: 287 KTVVAAIGLYAAVTAGYQGALMAPTEILAEQHAENLHMWFDPIGVKIALLSGSTKTKARR 346

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L ++A G+  I+IGTHAL Q  +++ KL  VI DEQHRFGV+QR  L +K   P VL 
Sbjct: 347 ELLAQLAAGEIDILIGTHALIQPDVEFKKLGFVITDEQHRFGVEQRRVLREKGENPDVLF 406

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S I E PAGRK I+T  +   +++ V+ R+   L  G++A
Sbjct: 407 MTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETHWLKKEQLNSVLMRMTQELEAGRQA 466

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE  + + ++ VE +  L  +F +   I ++HGR+   +K++VM +F +G   
Sbjct: 467 YVIAPLIEESDKLDVQNAVEAYEQLKAYFGTRFEIGLMHGRLHSDEKDAVMRAFSDGKIH 526

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTV+EVG++V +A+ + I +AE FGLAQLHQLRGRVGRGE  S C+L+  P   + 
Sbjct: 527 VLVSTTVVEVGVNVPNATFMTIYDAERFGLAQLHQLRGRVGRGEHQSYCVLIADPKTDEG 586

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662
              R+  +  T DGF +AE+DL+ R  G+  G +QSG+P+F +A   +HD   LE AR+D
Sbjct: 587 K-ERMMSMTETNDGFRLAEKDLELRGSGDFFGKRQSGLPEFKLADL-VHDYRALETARQD 644

Query: 663 AKHIL 667
           A+ +L
Sbjct: 645 AEKML 649


>gi|296331162|ref|ZP_06873636.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674318|ref|YP_003865990.1| branch migrating ATP-dependent DNA helicase involved in DNA
           recombination and repair [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151806|gb|EFG92681.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412562|gb|ADM37681.1| branch migrating ATP-dependent DNA helicase involved in DNA
           recombination and repair [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 682

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 234/637 (36%), Positives = 368/637 (57%), Gaps = 23/637 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF----QLQKRRPYKILLNDGT 98
           DLL Y P  + D   R  + E+  +  VT+ G +    S     + + R  +++L+  G 
Sbjct: 33  DLLNYFPYRYDDYELR-DLEEVKHDERVTVEGKVHSEPSLTYYGKKRNRLTFRVLV--GH 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             IT + F R    LK     G  +TV+GK  K +  I +        N        IE 
Sbjct: 90  YLITAVCFNRP--YLKKKLSLGSVVTVSGKWDKHRQTISVQE----LKNGPHQEDKSIEP 143

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VYS+   ++V + ++ I +AL++    LP+ + + L  +   P   +A   +H P     
Sbjct: 144 VYSVKENVTVKMMRRFIQQALNQYADSLPDPLPEKLKTRYKLPDYHQALKAMHQPETR-- 201

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKS 276
            E    AR R  Y+E L  Q+ +   RK  +++  GI      +   + ++++PF  T +
Sbjct: 202 -EALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQGIRQRFSNEELMRFIKSLPFPLTNA 260

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   +++I  DMS   RM R+LQGDVGSGKT VA IA+ AA+ +G Q  +M P  ILA+Q
Sbjct: 261 QSRVLREITADMSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ 320

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H + +    +   + V ++T ++    R++ LER+  G+  I++GTHAL QD +++  L 
Sbjct: 321 HADSLVSLFEKWDVSVALLTSSVKGKRRKELLERLEAGEIDILVGTHALIQDEVEFKALS 380

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV+QR KL  K   P VL MTATPIPRTL +T  G++D+S I E PAGRK
Sbjct: 381 LVITDEQHRFGVEQRKKLRNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRK 440

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I+T  +  + +D ++  ++  L +G++AY ICP IEE  + + ++ ++ +N L + F  
Sbjct: 441 QIETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSDIFRG 500

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             ++ ++HG++   +K+ VM  F    C++L++TTV+EVG++V +A+I++I +A+ FGL+
Sbjct: 501 KWNVGLMHGKLHSDEKDQVMREFSANQCQILVSTTVVEVGVNVPNATIMVIYDADRFGLS 560

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRGE  S CIL+  P  S+    R+ ++  T DGF ++E+DL+ R  G+  
Sbjct: 561 QLHQLRGRVGRGEHQSFCILMADPK-SETGKERMRIMSETNDGFELSEKDLELRGPGDFF 619

Query: 635 GIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670
           G KQSGMP+F +A   +HD   LE AR+DA +++  D
Sbjct: 620 GKKQSGMPEFKVADM-VHDYRALETARQDAANLVASD 655


>gi|157413185|ref|YP_001484051.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
           9215]
 gi|157387760|gb|ABV50465.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT
           9215]
          Length = 817

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 236/650 (36%), Positives = 362/650 (55%), Gaps = 25/650 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ---HSSFQLQKRRPYKILLNDGTG 99
           DL+ Y P +++D   R KI  +  + + T    I +   H S +         +++D T 
Sbjct: 150 DLINYFPRTYLDYTNRVKIINLKPDNLYTCIANIKRFYIHKSKKNSNLSIMNFVVSDETS 209

Query: 100 EITLLFFYRKTEMLKNVFFE--------GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151
            I +  F+         FF         G K+ ++GK+K  +     V P        + 
Sbjct: 210 SIKVTKFFLGRRFRSYSFFSSQKSLYTPGTKLAISGKVKLTEYGKTFVDPQIEILKGIND 269

Query: 152 NFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
           NF     I  +YSL   LS   F K++ + L      PE + K  L   S  S  E+   
Sbjct: 270 NFNYSGKILPLYSLGEALSNMSFIKLMKKVLIYAKQYPEILNKKQLDSLSLLSKGESLIN 329

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILR 267
           IH P      +    +++RL +DEL   QI  LL  RK  K  I   +  +  + ++ L 
Sbjct: 330 IHFPLTQ---QALLESKKRLVFDELFLLQIKFLLRKRKTNKNVISQQLPQKKSLLKEFLN 386

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  TKSQE+ + +I +D+S    M R+LQGDVGSGKT++A+ ++   +E   Q   +
Sbjct: 387 TFPFELTKSQENVLNEIKKDLSNALPMSRLLQGDVGSGKTIIAIASLLLVIEKNQQGAFL 446

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QHY+ + KY     + VE++TGN PQ  R++    + +G   I++GTHALF+
Sbjct: 447 VPTEVLAEQHYKNLLKYLDPLLVSVELLTGNTPQKKRKEIFSNLNNGLVDILVGTHALFE 506

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D + +  L +V++DEQHRFGV QR +L  K    ++L MTATPIPRTL L+  GD+D+S+
Sbjct: 507 DKVIFNALGMVVIDEQHRFGVSQRNRLLNKGENTNLLSMTATPIPRTLALSIYGDLDVSQ 566

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           ITE P GR PI T II  + + ++ + +   +++G++AY I P IE+ ++ N  S  + F
Sbjct: 567 ITELPPGRVPITTKIISEDDLSKLFKIVDDEITKGRQAYVILPLIEDSEKMNLSSAKKIF 626

Query: 508 NSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             L E   F   + ++HG+++  +K  V++SF      +L++TTVIEVGIDV +A+I+II
Sbjct: 627 KYLSEEVFFNKKVGLLHGKLNSQEKNEVINSFIENEINILVSTTVIEVGIDVPNATIMII 686

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEE 623
            N++ FGL+QLHQLRGRVGRG   S C L+      KN     RL VL+ + DGF IAE+
Sbjct: 687 YNSDRFGLSQLHQLRGRVGRGSTKSFCYLVTS---DKNGLENKRLCVLQKSNDGFYIAEK 743

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           DL+ R  G+ILG +QSG+P F++     +  L++ AR++A  +++ DPDL
Sbjct: 744 DLELRGPGQILGYRQSGLPDFVLDNLPNNKFLIDKAREEAIKVVSDDPDL 793


>gi|299821767|ref|ZP_07053655.1| DNA helicase RecG [Listeria grayi DSM 20601]
 gi|299817432|gb|EFI84668.1| DNA helicase RecG [Listeria grayi DSM 20601]
          Length = 682

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 242/679 (35%), Positives = 381/679 (56%), Gaps = 28/679 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEERIV 70
           PLS  +GVG++ +    ++     A +T   DLL+  P  + D  YR K + ++++E  +
Sbjct: 8   PLSALKGVGEETAKHFHEL-----AIDT-IADLLWNFPHRYED--YRLKDLMDVADEERI 59

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           TI G +   ++     R+  K+       E  +   +     LKN    G  +TV+GK  
Sbjct: 60  TIQGEVLTEATIAFYGRKKSKLSFRISDHEQVVKVDFFNQPYLKNNIVVGETVTVSGKWN 119

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLPEWI 189
           K + +I            +      +E VY L   +     +K + +AL   L  + E I
Sbjct: 120 KARAQITGSK----LKKGELQEEQELEGVYRLKGTIRNKTIQKYVKQALDLYLQDIEEII 175

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248
               L+K       EA   +H P+     +    AR R  Y+E L  Q+ +   RK + +
Sbjct: 176 PPKWLEKYQLIGRQEALATMHFPKSEDALK---QARRRFVYEEFLLFQLKMQFFRKLERE 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  GI I+ + +  +  +  +PF  T +Q+  + +I  DM     M R+LQGDVGSGKT+
Sbjct: 233 KSGGISIDYDVEKLRHYIEGLPFPLTSAQKRVVNEICGDMKSHFHMNRLLQGDVGSGKTV 292

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IAM AAV++G QA +M P  ILA+QH   + +  Q   I V ++T ++    RR+ L
Sbjct: 293 VASIAMYAAVQSGFQAALMVPTEILAEQHANSLVELLQPLDITVALLTSSVKGKKRRELL 352

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           + +  G   +++GTHAL Q+ + + KL LVI DEQHRFGV+QR  L +K   P VL MTA
Sbjct: 353 QLLEDGAIDVVVGTHALIQEEVVFSKLGLVITDEQHRFGVKQRRVLREKGEYPDVLFMTA 412

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G++ Y I
Sbjct: 413 TPIPRTLAITAFGEMDVSIIDELPAGRKAIETFWVKHEMLDRVIGFMEKEIQKGRQVYII 472

Query: 489 CPQIEEKKESNFRSVVERFNSLHE--HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE ++ + ++ ++ +N L +  H    + ++HG++   +KE +M  F       L+
Sbjct: 473 CPLIEESEKLDVQNAIDVYNILEQKWHGRHKVGLMHGKLLPAEKEDIMRDFNENNLDCLV 532

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG E S CIL+ +P  ++    
Sbjct: 533 STTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGSEQSYCILIANPK-TEVGKE 591

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665
           R+S++  T DGF+++E DL+ R  GE  G KQSG+P+F +A   +HD  +LEIAR+DA  
Sbjct: 592 RMSIMTETNDGFVVSERDLELRGPGEFFGSKQSGVPEFQVADM-VHDYRVLEIARQDAAE 650

Query: 666 I-----LTQDPDLTSVRGQ 679
           +     LT++P   ++  Q
Sbjct: 651 LIFTENLTENPAYQALYAQ 669


>gi|121603237|ref|YP_980566.1| ATP-dependent DNA helicase RecG [Polaromonas naphthalenivorans CJ2]
 gi|120592206|gb|ABM35645.1| ATP-dependent DNA helicase RecG [Polaromonas naphthalenivorans CJ2]
          Length = 715

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 235/660 (35%), Positives = 357/660 (54%), Gaps = 33/660 (5%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           R IDL  + P  + D     ++++  +  +V   G ++ HS   ++ RR   + ++DG+ 
Sbjct: 47  RDIDLALHLPLRYEDETRITRLADARDGEVVQFEGEVT-HSEVLIRSRRQLLVTVDDGSD 105

Query: 100 EITLLF--FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LI 156
              L F  FY   +   +V   G  + V G+++       MVHPH+     +    P  +
Sbjct: 106 TCVLRFLNFYPSHQKTLSV---GAWVRVRGELRGGFLGREMVHPHFKLAGGE---LPGAL 159

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK---SFPSIAEAFNIIHNPR 213
             VY    GL     +K ++  L+R   L E I    L K       S+ EA   +H+P 
Sbjct: 160 TPVYPTSAGLPQVYLRKAVLSGLARAD-LSETIPAPFLSKNMPLRLSSLREALQFLHHPT 218

Query: 214 KAKDFEW----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN------VEGKIAQ 263
                +     + PA +RL  +ELLA QI+ L  R+         +N          + +
Sbjct: 219 PDVALQTLEDRSHPAWQRLKAEELLAQQISQLQSRRVRAAMRAPALNGPAMRGTHCTLQE 278

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++L  +PF  T +Q+    +I  D+ +   M R+LQGDVG+GKT+VA +A A  ++AG Q
Sbjct: 279 QLLERLPFRLTGAQQRVSAEIEVDLKKNVPMHRLLQGDVGAGKTVVAALAAARCIDAGWQ 338

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             +MAP  ILA+QH+  +  + +   I    +TG+     RR+ L  +  G+A ++IGTH
Sbjct: 339 CALMAPTEILAEQHFSKLISWLEPLGIKTARLTGSQKPKERREMLALVESGEAGLVIGTH 398

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTS 439
           A+ Q  +++  L L I+DEQHRFGV QRL    K+T +   PH+L+MTATPIPRTL ++ 
Sbjct: 399 AVIQSKVKFKNLALAIIDEQHRFGVAQRLALRSKMTHEGQEPHLLMMTATPIPRTLAMSY 458

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S + E P GR PI T ++   R DEVI R++  +++G++ YW+CP IEE +  +
Sbjct: 459 YADLDVSTLDELPPGRTPIVTKLVNDARRDEVIARIQAQIAQGRQIYWVCPLIEESESID 518

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  +   +L E      + ++H RM   +K++VM  F  G   +L++TTVIEVG+DV 
Sbjct: 519 LVNATQTHAALSEALPGVMVGLLHSRMPPAEKKAVMSLFTEGVMAVLVSTTVIEVGVDVP 578

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH----PPLSKNSYTRLSVLKNT 614
           +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY     P L + +  RL  +  T
Sbjct: 579 NASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYSTGDAPRLGEVARARLKAMVET 638

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            DGF IA  DL  R  GE LG +QSG      A  +    LL  AR+ A  +L Q PDL 
Sbjct: 639 NDGFEIARRDLDIRGPGEFLGARQSGAAMLRFADLQTDAGLLAWAREVAPLMLDQYPDLA 698


>gi|306829933|ref|ZP_07463120.1| DNA helicase RecG [Streptococcus mitis ATCC 6249]
 gi|304427944|gb|EFM31037.1| DNA helicase RecG [Streptococcus mitis ATCC 6249]
          Length = 671

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 240/663 (36%), Positives = 377/663 (56%), Gaps = 25/663 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQAGLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  N+PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTVVKENLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    + ++   ++TG++  + +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPDLKLA--LLTGSLKASEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  GD+D+S I + PAGRKPI T  I   ++  V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITVFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPRVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADVIEDFPILEEARKVA 642

Query: 664 KHI 666
            +I
Sbjct: 643 SYI 645


>gi|77919208|ref|YP_357023.1| ATP-dependent DNA helicase RecG [Pelobacter carbinolicus DSM 2380]
 gi|77545291|gb|ABA88853.1| ATP-dependent DNA helicase RecG [Pelobacter carbinolicus DSM 2380]
          Length = 717

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 242/689 (35%), Positives = 380/689 (55%), Gaps = 31/689 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL T RGVG +    + K    G          L+  P  + DR     I+++  + 
Sbjct: 14  LGTPLDTIRGVGPR---LVEKFAKMGVFTVEH---ALYTLPFRYEDRRRLTPIAQLKPDC 67

Query: 69  IVTITGYI--SQHSSFQLQKRRPYKILLNDGTGEITLLFF-YRKTEMLKNVFFEGRKITV 125
                G +  +   +    +R+ +++++ D +G I+L +F YRKT + K  +  GR+   
Sbjct: 68  KEIFVGEVLAASEKTTSRSRRKLFEVIVGDSSGSISLKWFHYRKTWIQKQ-YPLGRRGIF 126

Query: 126 TGKIKKLKNRIIMVHPHYIF-HNSQD---------VNFPLIEAVYSLPTGLSVDLFKKI- 174
            G++K+      + HP   F    QD         ++F  I  VY L  GL+    +KI 
Sbjct: 127 YGEVKRFGAIREIHHPDVDFLREGQDPQSLLESDPLSFGRILPVYPLTEGLTQKTIRKIW 186

Query: 175 --IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERL 228
             IV+  +   V P  +  ++ ++++   +++A   +H P          E  SPAR  L
Sbjct: 187 KQIVDRYAEYVVAP--LPDEIRKRQNLMPLSDALRRVHFPSSDSSLKELEEGMSPARRTL 244

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
            +DEL   ++ + L R+    E G    ++    + +   +PF  T++Q   + +I +DM
Sbjct: 245 VFDELFYLELGMALKRRGVLLEEGHAFKLDHIYTKPLAGMLPFRLTEAQRRVLGEIKRDM 304

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
              + M R+LQGDVGSGKT+VAL+A   A+E   Q  ++AP  ILA+QH+   + + +  
Sbjct: 305 MSPHPMNRLLQGDVGSGKTVVALMAALVAIENRTQVAVVAPTEILAEQHFFQFQGWMKAL 364

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            + V  +TG+ P A RR+ L+++ +    +++GTHA+ QD +++  L L I+DEQHRFGV
Sbjct: 365 GLGVVFLTGSTPTAQRREILQQLKNSTVDMVVGTHAVLQDDVEFAALGLGIIDEQHRFGV 424

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            QR  L +K   P +L+MTATPIPRTL LT  GD+ +S I + P GR+P+ T +I   + 
Sbjct: 425 LQRACLRKKGKHPDLLVMTATPIPRTLALTVYGDLALSVIDQMPPGRQPVNTKVIVDQQR 484

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMS 526
            +  + ++  L EG++AY + P +EE ++S+  +  E    L E       I ++HG+M 
Sbjct: 485 RQAYQTIRNELVEGRQAYIVYPLVEETEKSDLMAATEGAEFLQEKVFPDKRIGVLHGKMR 544

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DKE++M  FK G   +L++TTVIEVGIDV +A++++IE+AE FGLAQLHQLRGRVGRG
Sbjct: 545 PADKEAIMRCFKAGELDILVSTTVIEVGIDVPNATVMMIEHAERFGLAQLHQLRGRVGRG 604

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
           +  S C+L+     S++   RL V++ T DGF IAE DL+ R  GE LG +QSG+P F +
Sbjct: 605 QHQSYCLLIRSHRCSEDGLRRLDVMEATTDGFKIAEADLEIRGPGEFLGTRQSGLPDFRV 664

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTS 675
           A       +LE AR++A  I      LTS
Sbjct: 665 ANLIRDGRILEQARQEAFSIANDPGFLTS 693


>gi|312143899|ref|YP_003995345.1| ATP-dependent DNA helicase RecG [Halanaerobium sp. 'sapolanicus']
 gi|311904550|gb|ADQ14991.1| ATP-dependent DNA helicase RecG [Halanaerobium sp. 'sapolanicus']
          Length = 685

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 248/669 (37%), Positives = 378/669 (56%), Gaps = 29/669 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI--SEISE 66
           L   +   +GVG K++  L+K+      N     DLL+Y P  + DR     I  ++I E
Sbjct: 5   LLDEVQYIKGVGPKWAKKLAKL------NIETVYDLLYYFPREYKDRSQISSIRYAQIGE 58

Query: 67  ERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           E  VTI   + +    +++K     K+  +D T  +  +++ +    L+++F EG+   +
Sbjct: 59  E--VTIKAEVIKVEYKKIRKNFDLLKVTFSDDTDVLNGIWYNQG--YLRDIFEEGKFYLL 114

Query: 126 TGKI-----KKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +GKI     KK K + I  +P +  I  NS  +N   I  +YSL  GL+    ++++  A
Sbjct: 115 SGKINEKTWKKYKRKEI-DNPVFEKIGDNSSVLNTGRIVPIYSLTEGLTQRRLRRVMANA 173

Query: 179 LSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L +    L + +   LL+K + P +  +   +H P+  K  E    +R+RLA++E    Q
Sbjct: 174 LKKYSSYLDDKLPDFLLKKYNLPGLKTSILGMHFPKSDKHQE---VSRKRLAFEEFFYFQ 230

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +  L  +++   E GI      +I  + L  + F  T +Q+   K+I +DM  K  M R+
Sbjct: 231 LYALDKKQKNNIEEGIQHEAVPEIEARFLSELDFELTTAQKRVWKEISKDMESKEAMSRL 290

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT++A ++   ++    Q V MAP  ILA+QHY    +   N    + ++TG
Sbjct: 291 LQGDVGSGKTIIAALSFLESLANDYQGVFMAPTEILAEQHYLNFLELFNNFDYEITLLTG 350

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++    RR+  E+I+ G   +IIGTHALFQ+ I+Y KL LV++DEQHRFGV+QR  L +K
Sbjct: 351 SLKNPERREIEEKISAGDIDLIIGTHALFQEGIEYQKLGLVVIDEQHRFGVEQRHSLKEK 410

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P +L+MTATPIPR++ +   GD+D+S I E P GRK   T     NR  ++   LK 
Sbjct: 411 GDNPDLLIMTATPIPRSMAMLVYGDLDLSVIDEMPPGRKRTATFWRRENRRKKIYSFLKE 470

Query: 478 VLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVM 534
            + EG++AY +CP IE   E  +  S  E +  L   F +  S+A++H  + + +K+ +M
Sbjct: 471 KIKEGRQAYIVCPLIEVSAEMPDLISAEELYEKLKNGFFADFSLALLHSGIKEEEKKEIM 530

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F+ G   +LIATTVIEVG+DV +AS++IIENAE FGLAQLHQLRGRVGRG + + CIL
Sbjct: 531 LQFRAGKIDILIATTVIEVGVDVSNASLMIIENAERFGLAQLHQLRGRVGRGRDQAYCIL 590

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           + +PP  + +  RL ++  + DGF IAEEDLK R  GE  G +Q G+    +       +
Sbjct: 591 ISNPP-GEEAEKRLEIMTKSSDGFYIAEEDLKMRGPGEFFGTRQHGLDDLKVGSLTEDQA 649

Query: 655 LLEIARKDA 663
           LLE AR +A
Sbjct: 650 LLEKARSEA 658


>gi|312135040|ref|YP_004002378.1| ATP-dependent DNA helicase recg [Caldicellulosiruptor owensensis
           OL]
 gi|311775091|gb|ADQ04578.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor owensensis
           OL]
          Length = 679

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/613 (37%), Positives = 365/613 (59%), Gaps = 19/613 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101
           DLL++ P  ++D     KI E+ +  + +    ++ +    + +  +  KI + DGTG +
Sbjct: 32  DLLWHIPRKYLDYSKLKKIRELCDGEVESFIAKVAGKPVEIETKSIKIIKIPVEDGTGVV 91

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
           T ++F +  + +KNV  EG     +GKI++    I + +P +  ++   ++   I  VY+
Sbjct: 92  TTVWFNQ--DYIKNVLKEGEIFCFSGKIERKGFYIEVKNPEFEKYDQHLLHTGRIVPVYN 149

Query: 162 LPTGLSVDLFKKIIVEALSRLP-----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
              GLS  + + II   L+++      ++P +I+    QK +   I  A   IH P    
Sbjct: 150 STEGLSQKVIRNIINNLLNQIDGALEDIIPAYIK----QKYNLKDINFAIKNIHFPENKL 205

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
             E    AR+RL ++E    Q+ALLL+++  +K  G+ I       ++  + +PF  T++
Sbjct: 206 SLEL---ARKRLVFEEFYLLQLALLLLKENIEKNEGLKIENAQNSLEEFEKFLPFELTEA 262

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+  + +I QD+    +M R++QGDVG GKT+VAL +  A ++AG Q  +MAP  +LA Q
Sbjct: 263 QKRVLAEIAQDLESTKQMNRLIQGDVGCGKTVVALASAYATIKAGYQVALMAPTEVLALQ 322

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY   KKY  N +  V ++ G+ P+  +   L+ + HG   ++IGTHAL QD +++  L 
Sbjct: 323 HYNECKKYFGN-KFNVRLLIGSTPKKEKEIILKELEHGLCKMVIGTHALIQDEVKFKNLG 381

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L I DEQHRFGV QR++LT+K ++P++L+MTATPIPRTL L   GD+DIS I + P GRK
Sbjct: 382 LAITDEQHRFGVIQRVELTKKGSSPNILVMTATPIPRTLSLVLYGDLDISIIDQLPPGRK 441

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514
            I T  +  +    V   +K  L EG++ YWICP IEE +  N +S VE   SL E F  
Sbjct: 442 KILTYAVDESFRQRVYNFIKKQLDEGRQVYWICPLIEESETLNAKSAVEFAKSLKEGFFK 501

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             +I  +HG++S  +++ +++ FK+G   +L++TTV+EVGI+V +A++++IENAE FGLA
Sbjct: 502 DYNIGCLHGKLSAKERDKILNDFKDGYIHILVSTTVVEVGINVPNATVMVIENAERFGLA 561

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRGE  S CI L++   S+ +  R+  +  +++GF IAE DLK R  G++ 
Sbjct: 562 QLHQLRGRVGRGEHQSYCI-LFNQSDSEIAKKRMIAITRSQNGFEIAEMDLKLRGPGDLF 620

Query: 635 GIKQSGMPKFLIA 647
           G KQ G+  F +A
Sbjct: 621 GTKQHGVMNFKVA 633


>gi|330826895|ref|YP_004390198.1| ATP-dependent DNA helicase RecG [Alicycliphilus denitrificans K601]
 gi|329312267|gb|AEB86682.1| ATP-dependent DNA helicase RecG [Alicycliphilus denitrificans K601]
          Length = 705

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 238/668 (35%), Positives = 359/668 (53%), Gaps = 37/668 (5%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL  + P  + D      I    E   V + G ++  S  Q++ RR   + L DGT
Sbjct: 28  TRDIDLALHLPLRYEDETRITPIRSAREGETVQVEGTVTA-SEIQMRPRRQLVVTLEDGT 86

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
           G   L FF       K +   G ++   G+++       M+HP   F  ++      +  
Sbjct: 87  GSCELRFFSFYPSHQKAMAV-GERLRARGEVRGGFWGRQMLHP--AFRKAEGALPAALTP 143

Query: 159 VYSLPTGLSVDLFKKIIVEALSR--LP-VLPEWIEKDLLQKKSFPSIAEAFNI------I 209
           VY     L     ++ +  AL+R  LP  LP  +E  L +  S   +   + +      +
Sbjct: 144 VYPTVAQLPQAYLRRAVASALARVDLPETLPPGLEPPLARFDSENGLHRPWGLRESLLFL 203

Query: 210 HNPRKAKDF------EWTSPARERLAYDELLAGQIALLLM---RKQFKKEIGIPINVEGK 260
           HNP  A D       + + PA +RL  +ELLA Q++ L+    R + +     P      
Sbjct: 204 HNP--APDVALATLQDHSHPAWQRLKAEELLAQQLSQLVSKRERARLRAPRLSPAPGAQA 261

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           + +++L  +PFS T +Q    ++I +D+++   M R+LQGDVGSGKT+VA +A A  ++A
Sbjct: 262 LHEQLLAALPFSLTAAQRRVGEEIARDLARAVPMHRLLQGDVGSGKTVVAALAAARCMDA 321

Query: 321 GGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           G Q  +MAP  ILA+QH+     ++          V  + G   +  R   LERIA G A
Sbjct: 322 GWQCALMAPTEILAEQHFAKLIGWLAPLLAARGRQVAWLAGGQKKKERAAMLERIASGGA 381

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMTATPIP 432
            +++GTHA+ Q+ +++  L L ++DEQHRFGV QRL L QK       PH+L+M+ATPIP
Sbjct: 382 ALVVGTHAVIQEQVRFRNLALAVIDEQHRFGVAQRLALRQKLQHDGMEPHLLMMSATPIP 441

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++   D+D+S I E P GR PI T +I  +R D+V+ER+   ++ G++ YW+CP I
Sbjct: 442 RTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDQVVERIGAQVAAGRQVYWVCPLI 501

Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           EE +  +  +       L E     ++ ++H RM   +K++VM+ FK+G   +L++TTVI
Sbjct: 502 EESEALDLSNATATHADLSEALPGVTVGLLHSRMPSAEKKAVMEEFKSGRMGVLVSTTVI 561

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTR 607
           EVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY       L + +  R
Sbjct: 562 EVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYSTGDSGRLGETARDR 621

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L  +  T DGF IA  DL+ R  GE LG +QSG      A      +LLE AR  A  +L
Sbjct: 622 LKAMAETTDGFEIARRDLEIRGPGEFLGARQSGDALLRFADLATDTALLEWARAAAPQML 681

Query: 668 TQDPDLTS 675
            +   L +
Sbjct: 682 DRHAALAA 689


>gi|118444201|ref|YP_878305.1| ATP-dependent DNA helicase RecG [Clostridium novyi NT]
 gi|118134657|gb|ABK61701.1| ATP-dependent DNA helicase RecG [Clostridium novyi NT]
          Length = 673

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 242/669 (36%), Positives = 377/669 (56%), Gaps = 30/669 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           ++  + + +G+G K    L++       N    +DLL Y P  +   +Y   IS+I+ E 
Sbjct: 3   VYDDIVSLKGIGPKTKELLNQ------CNIYNILDLLLYFPRDYEKTYYCDDISKITNED 56

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            V I   +         KR      +      +T    +   + +KN F   ++  + GK
Sbjct: 57  KVLIKAKVKSIKKDAYVKRNMVISTVEFIKDNVTFKGKWFNQKYIKNKFMVNKEYFIFGK 116

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++  +N I   +P  +       +F  +   YSL   L+   F+K I   L  + ++ E 
Sbjct: 117 VQLERNNITFTNPTIV---EDPESFLNVIPKYSLKGSLTNKFFEKTIKHVLDNIEIV-EN 172

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   +L K +  S+ EA   IH P   K  E    A+ RL + EL    + LL++ KQ+K
Sbjct: 173 LPSQILNKYNLISLDEAIRNIHKPTGFKSLE---EAQNRLKFQELFTYSLKLLML-KQYK 228

Query: 249 KEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K  G+   +  ++  KIL++ IP + T SQ   I++IL D  +   M R++QGDVGSGKT
Sbjct: 229 KSEGVAFKISDEL--KILKDSIPVTLTNSQNKVIREILIDEKRDVPMNRLVQGDVGSGKT 286

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VALI++   ++ G Q  +MAP  ILA QHY    +  ++  I +E++TG+    H+ + 
Sbjct: 287 IVALISIFNVIKNGYQGCLMAPTEILANQHYTQAIELFKDFNISIELLTGST--KHKDEV 344

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             R+ +G   +IIGTHAL +D +++ KL +V+ DEQHRFGV+QR KL  K     +L+MT
Sbjct: 345 KNRLKNGSIDLIIGTHALLEDDVEFSKLGIVVTDEQHRFGVKQRSKLYNKNNNIDILVMT 404

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KVVLSE---GK 483
           ATPIPRTL L+  GD+D+S I E P GRK I T  +     D+  +R+    L E   G 
Sbjct: 405 ATPIPRTLALSIYGDLDVSSIDELPPGRKKIDTYAVN----DKFRKRVYNFALKEIHSGA 460

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y +CP +EE ++ N +SV + +  L E++   + I I+HG+M   +K+ +M+ FKNG 
Sbjct: 461 QVYIVCPLVEENEDLNIKSVEKLYLELKENYFKDTEIEILHGKMPSKEKDHIMNKFKNGH 520

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            K+LI+TTVIEVG++V +A+++IIENAE FGL+QLHQLRGRVGRG++ S CIL+ +   S
Sbjct: 521 IKVLISTTVIEVGVNVPNATLMIIENAERFGLSQLHQLRGRVGRGDKKSYCILITNSN-S 579

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + +  R++V+  + DGF IAEEDLK R  GEI G  Q G   F+I+       +L+ A K
Sbjct: 580 EITKKRMNVITKSNDGFFIAEEDLKLRGSGEIFGFNQHGEDGFIISNIVDDYKILKSANK 639

Query: 662 DAKHILTQD 670
           +A+ ++  +
Sbjct: 640 EARSLINSN 648


>gi|148994014|ref|ZP_01823370.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP9-BS68]
 gi|168488586|ref|ZP_02712785.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP195]
 gi|147927481|gb|EDK78509.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP9-BS68]
 gi|183572842|gb|EDT93370.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP195]
 gi|332072525|gb|EGI83008.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA17570]
          Length = 671

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 242/674 (35%), Positives = 384/674 (56%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L+ IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLQTIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRK I T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKSIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFACKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEAWQEDPE 656


>gi|315282812|ref|ZP_07871135.1| ATP-dependent DNA helicase RecG [Listeria marthii FSL S4-120]
 gi|313613541|gb|EFR87362.1| ATP-dependent DNA helicase RecG [Listeria marthii FSL S4-120]
          Length = 682

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 238/668 (35%), Positives = 383/668 (57%), Gaps = 29/668 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSRLPVLP 186
           K + ++           N ++     +E VY L   L   ++  + ++  +A S    + 
Sbjct: 120 KSRAQVTASKIKIGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRLAFDAYS--SKIE 172

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245
           E I  +LL+K       EA  I+H P   K+ E    AR R+ Y+E L  Q+ +   RK 
Sbjct: 173 EVIPTNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKI 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSG
Sbjct: 230 EREKSGGISINYDVEDLRHYIESLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR
Sbjct: 290 KTVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRR 349

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL 
Sbjct: 350 ELLAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLF 409

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + 
Sbjct: 410 MTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIEKGHQV 469

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP IEE ++ +  + ++ FN L   + +     ++HG++   DKE +M  F +    
Sbjct: 470 YIICPLIEESEKLDVENAIDVFNILQNKWGTKYTPGLMHGKLLPADKEQIMRDFNDKKID 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
            L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++ 
Sbjct: 530 CLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEV 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662
              R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+D
Sbjct: 589 GKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQD 647

Query: 663 AKHILTQD 670
           A H++ ++
Sbjct: 648 AVHMIFEE 655


>gi|16800991|ref|NP_471259.1| ATP-dependent DNA helicase RecG [Listeria innocua Clip11262]
 gi|16414426|emb|CAC97155.1| lin1925 [Listeria innocua Clip11262]
          Length = 682

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 238/668 (35%), Positives = 384/668 (57%), Gaps = 29/668 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++      +  K+     T G++  + F+ +   LKN    G  +T++GK  
Sbjct: 61  IQGEVLTEATVAFYGHKKSKLSFRVSTEGQVIKIDFFNQP-YLKNKISVGETVTISGKWD 119

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSRLPVLP 186
           K + +I           N ++     +E VY L   L   ++  + ++  ++ S+   + 
Sbjct: 120 KSRAQITASKIKIGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRLAFDSYSK--DIE 172

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245
           E I  +LL+K       EA  ++H P   K+ E    AR R+ Y+E L  Q+ +   RK 
Sbjct: 173 EVIPTNLLEKYQLMDRLEAVRVLHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKI 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSG
Sbjct: 230 EREKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR
Sbjct: 290 KTVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRR 349

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL 
Sbjct: 350 ELLAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRILREKGEYPDVLF 409

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + 
Sbjct: 410 MTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQV 469

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +    
Sbjct: 470 YIICPLIEESEKLDVQNAIDVFNILQNKWGTKYVPGLMHGKLLPADKEQIMRDFNDKKID 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
            L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG E S CIL+  P  ++ 
Sbjct: 530 CLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGAEQSYCILIADPK-TEV 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662
              R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+D
Sbjct: 589 GKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQD 647

Query: 663 AKHILTQD 670
           A H++ ++
Sbjct: 648 AVHMIFEE 655


>gi|146329601|ref|YP_001209906.1| ATP-dependent DNA helicase RecG [Dichelobacter nodosus VCS1703A]
 gi|146233071|gb|ABQ14049.1| ATP-dependent DNA helicase RecG [Dichelobacter nodosus VCS1703A]
          Length = 684

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 235/622 (37%), Positives = 359/622 (57%), Gaps = 29/622 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP-YKILLND-GTGE 100
           DLL + P  + D      ++++ + +   + G + + +  Q Q RRP   +LL D   GE
Sbjct: 31  DLLLHLPQRYEDHSRLTAMNDLQDGQTAFVHGQVIR-AEIQ-QYRRPVLTVLLRDRAGGE 88

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA-- 158
           + L +F+     +K  F  GR     GKI +      M HP   +  ++ +  PL +   
Sbjct: 89  LYLRYFHFYPNQIKT-FRAGRWGLFYGKINRSFALPEMSHPEITWLTNEHLP-PLPKTWY 146

Query: 159 -VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            +YS   GL+   +++ I + L +L +     E D L +K F S+A+A  I+H P    D
Sbjct: 147 PIYSSVQGLTQAHWQQAINDVLKQLVI----SETDALTQKGFLSLAQALRILHQPPLTAD 202

Query: 218 FEW----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                    PAR+RL  +EL A Q++    R   +++    +     + Q+ +  +PF+ 
Sbjct: 203 PNALLLPQHPARQRLIMEELCAHQLSFTQARMHQQQKTAPELPENSVLIQQFIAALPFTL 262

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q+    +I  D+++   M+R++QGDVGSGKT++AL+A   A+ AG Q   MAP  +L
Sbjct: 263 TAAQKRVHAEIAADLAKNAPMMRLVQGDVGSGKTVIALLAALQAIAAGKQVAFMAPTELL 322

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH   +KK  + + I   ++TG +    +R  L+ I  G+A +I+GTHALFQ  + Y+
Sbjct: 323 AEQHAANMKKLLKLSAIEPVLLTGKLSAKTKRARLKAIERGEAALIVGTHALFQSQVNYH 382

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +L L+I+DEQHRFGV QR +L  K+    APH L++TATPIPRTL ++  G +  S I +
Sbjct: 383 RLALIIIDEQHRFGVHQRFQLQDKSHEEWAPHQLILTATPIPRTLAMSLYGKLSTSIIDQ 442

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            PAGRK I+T ++  +  D +I RL  V  +G++AYW+CP IEE        V E   ++
Sbjct: 443 LPAGRKSIQTAVMSNHHRDTLIARLGAVCRKGQQAYWVCPFIEESDV----FVCENGEAM 498

Query: 511 HEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             +   S     +  +HG++S   +   M++F  G   +L+ATTVIEVG+DV +A+++II
Sbjct: 499 TAYLQRSLPDLRVEFVHGKLSSDARREKMEAFAAGAVDILVATTVIEVGVDVANATLMII 558

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           ENAE FGL+QLHQLRGRVGRG + S C+LLY  PL +N+  RL+V++ T DGF IAEEDL
Sbjct: 559 ENAERFGLSQLHQLRGRVGRGSQQSYCVLLYQAPLGENAQRRLAVMRATTDGFQIAEEDL 618

Query: 626 KQRKEGEILGIKQSGMPKFLIA 647
             R  GE+LG KQ+G   F +A
Sbjct: 619 LLRGAGELLGTKQTGENGFYLA 640


>gi|116873246|ref|YP_850027.1| ATP-dependent DNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742124|emb|CAK21248.1| ATP-dependent DNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 682

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 238/668 (35%), Positives = 385/668 (57%), Gaps = 29/668 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           + G I   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 61  VQGEILTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKIIVGEIVTISGKWD 119

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSRLPVLP 186
           K + +I           N ++     +E VY L   L   ++  + ++  ++ S+   + 
Sbjct: 120 KSRAQITASKIKLGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRLAFDSYSK--DIE 172

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245
           E I  +LL+K       EA  I+H P   K+ E    AR R+ Y+E L  Q+ +   RK 
Sbjct: 173 EVIPTNLLEKYQLIDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKI 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSG
Sbjct: 230 EREKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR
Sbjct: 290 KTVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKRRR 349

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL 
Sbjct: 350 ELLAMLENGSVDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRILREKGEYPDVLF 409

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + 
Sbjct: 410 MTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQV 469

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +    
Sbjct: 470 YIICPLIEESEKLDVQNAIDVFNILQNKWGTKYVPGLMHGKLLPADKEQIMRDFNDKKID 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
            L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++ 
Sbjct: 530 CLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEV 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662
              R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+D
Sbjct: 589 GKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQD 647

Query: 663 AKHILTQD 670
           A H++ ++
Sbjct: 648 AVHMIFEE 655


>gi|168484888|ref|ZP_02709833.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           CDC1873-00]
 gi|172041962|gb|EDT50008.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           CDC1873-00]
          Length = 671

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 241/674 (35%), Positives = 384/674 (56%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L+ IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLQTIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRK I T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKSIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEAWQEDPE 656


>gi|167754008|ref|ZP_02426135.1| hypothetical protein ALIPUT_02295 [Alistipes putredinis DSM 17216]
 gi|167658633|gb|EDS02763.1| hypothetical protein ALIPUT_02295 [Alistipes putredinis DSM 17216]
          Length = 703

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 249/698 (35%), Positives = 379/698 (54%), Gaps = 31/698 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGY 75
           GVG+  +  L K +           D+L ++P  +IDR    +I +I+E    ++   G 
Sbjct: 14  GVGEARARLLEKELGIRTLG-----DMLCHYPFRYIDRTRIYRIDQIAEGDSALIQFRGR 68

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           I+  S     ++R +  ++NDG+G   L++F +  + ++     GR+  + G+    K  
Sbjct: 69  ITGVSYAGAGRKRRFTAVVNDGSGVAELVWF-QGIKWIEKRIEVGREYLIFGRPSFFKGE 127

Query: 136 IIMVHPHY-----IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189
           + +VHP        F    +     ++ +YS    LS  L  K I   +  L P++ + I
Sbjct: 128 LSVVHPEIETIEKAFSRKAESG---LQGIYSSTERLSSVLGTKGIYTIVCNLWPMVRDHI 184

Query: 190 EKDLLQKK----SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR- 244
            + L  +        S+ +A   IH P+     E    A+ RL ++ELL  Q+ +   R 
Sbjct: 185 RETLPDRMRTRYGLLSLRDALYNIHFPQSP---ELLRQAQYRLKFEELLGIQLGIQSRRT 241

Query: 245 KQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            +  K  G      G +        +PF  T +Q+  +K+I QD     +M R+LQGDVG
Sbjct: 242 ARLSKNNGFLFPKVGGVFNTFFNTRLPFPLTGAQKRVVKEIRQDTISGYQMNRLLQGDVG 301

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVAL++M  AV+ G QA +MAP  ILA+QHY   ++  +   + V I+TG      
Sbjct: 302 SGKTLVALMSMLLAVDNGFQACMMAPTEILARQHYATFQRMLEGMDVRVAILTGASKARE 361

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPH 422
           RR+AL  IA G   ++IGTHAL +D +Q+  L  V++DEQHRFGV+QR +L T+    PH
Sbjct: 362 RREALAGIADGSIDLLIGTHALIEDRVQFSNLGFVVIDEQHRFGVEQRARLWTKNEQPPH 421

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+MTATPIPRTL +T  GD+D+S I E P GR+PI+TV         +   ++  + +G
Sbjct: 422 ILVMTATPIPRTLAMTLYGDLDVSVIDELPPGRQPIRTVHYTDAARLRLFGFMRQEIKKG 481

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKN 539
           ++ Y + P I+E +  +++ + + + ++   F        I HG+M   DKE  M  FK+
Sbjct: 482 RQIYVVYPLIKESETMDYKDLQDGYEAISRDFPLPEYVTTICHGKMKPEDKEESMRQFKS 541

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +++AT+VIEVG+DV +A++++IE+AE FGL+QLHQLRGRVGRG + S CIL+    
Sbjct: 542 GEANIMVATSVIEVGVDVPNATVMVIESAERFGLSQLHQLRGRVGRGSQQSYCILMSGEK 601

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEI 658
           LSK +  RL  +  T DGF +AE DLK R  G++ G  QSGM   L IA P L   +L +
Sbjct: 602 LSKEARLRLEAMCETNDGFRLAELDLKLRGAGDVNGTLQSGMAFDLKIANPTLDSQILTV 661

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
            R+ A  +LT DP LT    + +R L   Y   E   F
Sbjct: 662 TREAAAEVLTADPTLTQNGHEGLRELRKRYSGREEIDF 699


>gi|332881158|ref|ZP_08448818.1| ATP-dependent DNA helicase RecG [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332680907|gb|EGJ53844.1| ATP-dependent DNA helicase RecG [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 705

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 253/700 (36%), Positives = 380/700 (54%), Gaps = 43/700 (6%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L   +   RGVGK+ +  L   +        ++ DLL   P+ +IDR    KI+E+  
Sbjct: 6   NLLHTSVEYLRGVGKQRAELLKSELGI-----EQYQDLLNLFPNRYIDRTKFYKINELQN 60

Query: 67  ERI-VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKI 123
               V + G I    +    +++  +++    D TG++ L++F +  + + +        
Sbjct: 61  NNAEVQLIGKIVNLRTVASAQQKQARLVATFVDETGQMELVWF-KGHKWISDSLKLNESY 119

Query: 124 TVTGKIKKLKNRIIMVHPHYIF--------HNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175
            + GK+        M HP            H+S    +P  E +     G+S  + +++I
Sbjct: 120 VIFGKVNHFGGIFSMPHPEMDLLVDFNKAGHSSIQPVYPSTEKLTK--RGVSNRVMRQLI 177

Query: 176 VEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
                      +  LP  I K L    +  S  EA   IH P    D    + A  RL +
Sbjct: 178 HTVFEEVGYQFMENLPASIRKTL----NLISKQEAMRNIHFP---ADQSMLTKATVRLKF 230

Query: 231 DELLAGQIAL----LLMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDIL 285
           +EL   Q+ L    LL +++F+   G+P    G        + +PF  T +Q+  +K+I 
Sbjct: 231 EELFYIQLQLVRKNLLQKQKFQ---GMPFRKVGDAFMNFYNHHLPFPLTNAQKRVLKEIR 287

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D+    +M R+LQGDVGSGKT+VAL+ M  AV+ G QA +MAP  ILA QHY+ I    
Sbjct: 288 ADLGSNAQMNRLLQGDVGSGKTIVALMTMLLAVDNGFQACLMAPTEILATQHYQSISALL 347

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           QNT I V ++TG+     RR   E++  G   I+IGTHAL +D +Q+  L L I+DEQHR
Sbjct: 348 QNTGISVALLTGSSKTKERRILDEQLQEGSLSILIGTHALLEDKVQFANLGLAIIDEQHR 407

Query: 406 FGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           FGV+QR KL +K T  PH+L+MTATPIPRTL ++  GD+D+S I E P GRKPIKT+   
Sbjct: 408 FGVEQRAKLWRKNTLPPHILVMTATPIPRTLAMSVYGDLDVSVIDELPPGRKPIKTIHHF 467

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAII 521
            NR  E  E +K  + +G++AY + P IEE +  +F+++ E +  +   F      ++I+
Sbjct: 468 ENRRAETYEFVKKEIDKGRQAYVVYPLIEESEALDFKNLTEGYEYISASFPLPKYKVSIV 527

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG++   +K+  M+ F     ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRG
Sbjct: 528 HGKLKPAEKDVEMERFVRNETQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRG 587

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           RVGRG E S CILL    +S ++ TR+  +  T DGF IAE DLK R  G+++G +QSG+
Sbjct: 588 RVGRGSEQSYCILLTGNKMSNDTRTRMETMVRTNDGFEIAEVDLKLRGPGDLMGTQQSGV 647

Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
               IA       +L+ AR  A  +L  DPDL     Q +
Sbjct: 648 LALKIADIVKDQEILKAARAYAIDLLKADPDLVQPEHQCV 687


>gi|313623266|gb|EFR93510.1| ATP-dependent DNA helicase RecG [Listeria innocua FSL J1-023]
          Length = 682

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 238/668 (35%), Positives = 385/668 (57%), Gaps = 29/668 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLRD-LSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQX-YLKSKISIGETVTISGKWD 119

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSRLPVLP 186
           K + +I           N ++     +E VY L   L   ++  + ++  ++ S+   + 
Sbjct: 120 KSRAQITASKIKIGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRLAFDSYSK--DIE 172

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245
           E I  +LL+K       EA  ++H P   K+ E    AR R+ Y+E L  Q+ +   RK 
Sbjct: 173 EVIPTNLLEKYQLMDRLEAVRVLHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKI 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSG
Sbjct: 230 EREKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR
Sbjct: 290 KTVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRR 349

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  + +G   I+IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL 
Sbjct: 350 ELLAMLENGSIDILIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRILREKGEYPDVLF 409

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + 
Sbjct: 410 MTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQV 469

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +    
Sbjct: 470 YIICPLIEESEKLDVQNAIDVFNILQNKWGTKYVPGLMHGKLLPADKEQIMRDFNDKKID 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
            L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++ 
Sbjct: 530 CLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEV 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662
              R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+D
Sbjct: 589 GKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQD 647

Query: 663 AKHILTQD 670
           A H++ ++
Sbjct: 648 AVHMIFEE 655


>gi|307707477|ref|ZP_07643959.1| ATP-dependent DNA helicase RecG [Streptococcus mitis NCTC 12261]
 gi|307616429|gb|EFN95620.1| ATP-dependent DNA helicase RecG [Streptococcus mitis NCTC 12261]
          Length = 671

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 239/663 (36%), Positives = 378/663 (57%), Gaps = 25/663 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLTQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLGEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ ++   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLDWSQEKVSAVKESLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG Q+ +M P  ILA+QH+E +K    + ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQSALMVPTEILAEQHFESLKSLFPDLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A  IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADFIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKEQKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHI 666
            +I
Sbjct: 643 SYI 645


>gi|281412262|ref|YP_003346341.1| ATP-dependent DNA helicase RecG [Thermotoga naphthophila RKU-10]
 gi|281373365|gb|ADA66927.1| ATP-dependent DNA helicase RecG [Thermotoga naphthophila RKU-10]
          Length = 763

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 235/634 (37%), Positives = 357/634 (56%), Gaps = 21/634 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL + P  + DR    K++++     VT  G I    + + Q       +L+DG   + 
Sbjct: 124 DLLEFFPRDYEDRRKIFKLNDLLPGEKVTTQGKIVSVETKRFQNMNILTAVLSDGLVHVL 183

Query: 103 LLFFYRKTEMLKNVF--FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ----DVNFPL- 155
           L +F    E L+       G+++ VTG +K            Y  HN++    +  +   
Sbjct: 184 LKWF--NQEYLQTYLKQLTGKEVFVTGTVKS-----NAYTGQYEIHNAEVTPKEGEYARR 236

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           I  +Y L +G+S    +KI  E +  L   L E + + +L+K+    + +A+  +H P  
Sbjct: 237 ILPIYRLTSGISQKQMRKIFEENIPSLCCSLKETLPERILEKRKLLGVKDAYYGMHFP-- 294

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            K F     ARERLAY+EL   Q+A   +RK+ +K  GIP  +EGK+A++ ++++PF  T
Sbjct: 295 -KTFYHLEKARERLAYEELFVLQLAFQKIRKEREKHGGIPKKIEGKLAEEFIKSLPFKLT 353

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            SQ+ A ++I  DM  +  M R+LQGDVGSGKT+VA +A+    EAG Q   M P  ILA
Sbjct: 354 NSQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILA 413

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            QHY    +      I V ++ G    + + K    + +GQ  ++IGTHAL Q+ + +  
Sbjct: 414 IQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKN 473

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L LVI+DEQHRFGV+QR  L  K      L+M+ATPIPR++ L   GD+D++ I E P G
Sbjct: 474 LGLVIIDEQHRFGVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG 533

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           RK ++T+++P++R++E+ E ++  + +G +A+ + P IEE  + N +S VE +  L +  
Sbjct: 534 RKEVQTMLVPMDRVNEIYEFVRQEVMKGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV 593

Query: 515 TSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                + ++HGR+S  +K+ VM  F  G   +L++TTVIEVGIDV  A++++IEN E FG
Sbjct: 594 FPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFG 653

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LAQLHQLRGRVGRG + + C L+    + + +  RL       DGF IAE DLK R  GE
Sbjct: 654 LAQLHQLRGRVGRGGQEAYCFLVVG-DVGEEAMERLRFFTLNTDGFKIAEYDLKTRGPGE 712

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
             G+KQ G+  F +A       LLE AR+D + I
Sbjct: 713 FFGVKQHGLSGFKVADLYRDLKLLEWAREDVQEI 746


>gi|269926755|ref|YP_003323378.1| ATP-dependent DNA helicase RecG [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790415|gb|ACZ42556.1| ATP-dependent DNA helicase RecG [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 786

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 237/671 (35%), Positives = 372/671 (55%), Gaps = 23/671 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+S+  GVG++ +    ++      +  R  D L Y+P  + DR    KI+E+      T
Sbjct: 109 PISSMPGVGQRRAALFGRL----GIHLIR--DALEYYPREYHDRSNLRKIAELQFGNTET 162

Query: 72  ITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
               + + S  +L          L D TG I   +F R    ++     G +I VTGK+ 
Sbjct: 163 FIAKVKEVSVRKLSNNLNLLTARLQDETGFIDATWFSRG--FVRRDLEPGMEIIVTGKVG 220

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWI 189
           +   ++ +  P Y   +   ++   I  +Y    GL+  L + +I + ++   V + + +
Sbjct: 221 QFLGKLKVESPEYEHLDKSLLHSGRIVPIYRSTEGLNNKLLRSVIHDIVAYHSVRIEDHL 280

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            + L+ + S   + +A   IH P     ++    AR RLA+DE L  Q+  L+ +   ++
Sbjct: 281 PQHLIDELSLLDLGDALYQIHFP---DSWDQLEAARRRLAFDEFLEIQLGALMKQAVRRR 337

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
             G + ++V      + L N+PF  T +QE  I++I+ D+     M R+LQGDVGSGKT+
Sbjct: 338 SKGALALDVRKPQIGEFLTNLPFRLTGAQERVIQEIMHDLESDVPMNRLLQGDVGSGKTV 397

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRR 365
           VA  A+  A   G Q  IMAP  ILA+QHY+ I +           V ++TG++    R 
Sbjct: 398 VAASALITAFANGYQGAIMAPTEILAEQHYKGISRLVSVLGEDAPKVSLLTGSIKGKERD 457

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
              + +  G+  I+IGTHAL Q+ +++  L + +VDEQHRFGV+QR  L  K   PH+L+
Sbjct: 458 DLYQAVEQGEIDILIGTHALIQEGVRFNNLAVCVVDEQHRFGVEQRAALRAKGVNPHLLV 517

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPR+L LT  GD+D+S + E P GR+PI+T  +   +       L+  +  G++A
Sbjct: 518 MTATPIPRSLALTIYGDLDLSVLDEMPPGRQPIQTFALTPEQRSWAYNFLREEVERGRQA 577

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP +EE ++   ++ +E +  L ++      + ++HGRM   +K+ VM+ F+ G  +
Sbjct: 578 YIICPLVEESEKIEAKAAIEEYERLQKYVFPDLRLGLLHGRMKPREKDEVMERFRLGELQ 637

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++T V+EVGIDV +A++++IE A+ FGLAQLHQ RGRVGRG E S C+LL   P S++
Sbjct: 638 VLVSTAVVEVGIDVPNATVMLIEGADRFGLAQLHQFRGRVGRGTEKSYCLLLSDSP-SED 696

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662
           +  RL +++   DGF++AEEDLK R  GE  GI+QSG     +A+  L D  LLE  RK 
Sbjct: 697 ARKRLEIVQECSDGFVLAEEDLKMRGPGEFYGIRQSGQINLKVAK--LSDFGLLEETRKI 754

Query: 663 AKHILTQDPDL 673
           A  +L  DPDL
Sbjct: 755 AAELLEDDPDL 765


>gi|118602897|ref|YP_904112.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567836|gb|ABL02641.1| ATP-dependent DNA helicase RecG [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 686

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 237/653 (36%), Positives = 366/653 (56%), Gaps = 23/653 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI--SE 63
           ++ LF+P+    G+G K    L+ I   G  N      LLF+ P+ + D+    K+  ++
Sbjct: 1   MHQLFSPIIVLNGLGPKIQQKLNAI---GIFN---LEHLLFHLPTRYQDKTKLTKLNQAQ 54

Query: 64  ISEERIVTIT-GYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           + +E ++ +T  +I Q S+ Q   R+    L + G  ++ L FF+      K  F  G  
Sbjct: 55  VGDEVLIQLTIEHIEQVSTHQ---RQLLCYLSDSGHQDLLLRFFHFNQ---KQNFIRGDI 108

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALS 180
           I   G+IK  KN + M HP Y   +    +     +  +Y+L   +     KK I  AL 
Sbjct: 109 IQCFGEIKIGKNSLEMHHPEYRLISKGQAHLLEKTLSPIYALTANIHQAQMKKWIDIALE 168

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAG 236
            L     +     L   S P++ +A   +H+P+   + E    +  P+++RL  +EL A 
Sbjct: 169 TLQQSNLYDNFKNLANNSMPTLKQALKTLHHPKVNDNIEQITNFNHPSQQRLIIEELCAQ 228

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           ++ LL ++ + K +      ++  + +K+L  + F  TK+Q+ +I +I  D++    MLR
Sbjct: 229 RLNLLQLKDKRKSKKSNIFKIKDVLTKKVLNVLGFQLTKAQQRSIDEINSDLASNFPMLR 288

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VA+ A   A+E G Q  IMAP   LA QH +    Y     I +  +T
Sbjct: 289 LLQGDVGSGKTIVAVFACLQAIENGFQVTIMAPNEALASQHLQEFSNYLDPLGIDIAFLT 348

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+     R + L++I   +  IIIGTH   Q  + + KL LVI+DEQH+FGV QRL L Q
Sbjct: 349 GSQSATQRVERLKKIIIDEVKIIIGTHVFLQTQVVFNKLGLVIIDEQHKFGVHQRLSLVQ 408

Query: 417 KA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           KA   PH L+MTATPIP +L++++  D+D S I E P GRKP KT+ +  ++ D+VIE++
Sbjct: 409 KAHNTPHQLVMTATPIPTSLIMSAYADLDCSVIDELPPGRKPTKTIALSNDKKDKVIEKI 468

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           K V + G + YW+C  IEE +    +S     + L E+    ++ +IHG+M   +K ++M
Sbjct: 469 KQVCTTGNQVYWVCTLIEESETLRAKSATSTHHYLQENLKELTVVLIHGKMHKDEKSTIM 528

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           D F      +L+ATTVIE+G++V ++ +I+IEN+E  GL+QLHQLR R GR    S CIL
Sbjct: 529 DQFLKNKIDVLVATTVIEIGVNVTNSPLIVIENSERLGLSQLHQLRSRAGRDTNTSVCIL 588

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           +Y  PLS +S+ RL  L+ T DGF IA++DL+ R  GEILG +Q+G+    IA
Sbjct: 589 MYQAPLSHSSFVRLDTLRQTNDGFKIAQKDLELRGPGEILGTQQAGIANMKIA 641


>gi|331265918|ref|YP_004325548.1| ATP-dependent DNA helicase RecG [Streptococcus oralis Uo5]
 gi|326682590|emb|CBZ00207.1| ATP-dependent DNA helicase RecG [Streptococcus oralis Uo5]
          Length = 671

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 239/663 (36%), Positives = 376/663 (56%), Gaps = 25/663 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQSLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ ++   +    +   +PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLDWSQEKVTAVKETLPFTLTQAQEKSLREILADMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E +K    + ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLKNLFPDLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+   IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEVDFIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRVLREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHI 666
            +I
Sbjct: 643 SYI 645


>gi|322375696|ref|ZP_08050208.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C300]
 gi|321279404|gb|EFX56445.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C300]
          Length = 671

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 240/674 (35%), Positives = 384/674 (56%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK--VLAQVEED-----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQSLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVSAVKESLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    + ++   ++TG++    +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPDLKLA--LLTGSLKAVEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + ++++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVSLLHGKMKSDEKDQIMQDFKEQKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEGWQEDPE 656


>gi|295399774|ref|ZP_06809755.1| ATP-dependent DNA helicase RecG [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978177|gb|EFG53774.1| ATP-dependent DNA helicase RecG [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 689

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 236/667 (35%), Positives = 384/667 (57%), Gaps = 33/667 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G++ S  L ++        T   +LL + P  + D   +  ++E+  +  VT
Sbjct: 15  PVTAIKGIGEETSEALREM------GITTIEELLMHVPYRYEDYEVK-DLAEVKHDEKVT 67

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +    S     ++  ++      G   IT++ F R    LK        +TV+GK 
Sbjct: 68  VEGKVYSEPSLTYYAKKKSRLAFRLLVGRYLITVVCFNRP--YLKQKLSINDTVTVSGKW 125

Query: 130 KKLKNRIIMVHPHYIFHNSQDVN-FPL---IEAVYSLPTGLSVDLFKKIIVEALSRL-PV 184
            +        H   I  N   +   P    +E VYS+   ++V   ++ I  AL++    
Sbjct: 126 DR--------HRQTITANELKMGALPQKRELEPVYSVRGSVTVKGMRRFIQLALTQYGEA 177

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + + +   + Q     S  EA   IH PR  ++ +    AR RL Y+E L  Q+ +  +R
Sbjct: 178 IIDPLPLSMRQTYRLISKQEAIRAIHFPRSHEELK---QARRRLVYEEFLLFQLKIHALR 234

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K Q +   GI  +   +     +  +PF  TK+Q+  +++IL DM    RM R+LQGDVG
Sbjct: 235 KVQREHSQGIAHSFSPEKLHDFIDRLPFPLTKAQQRVVREILTDMQSPYRMNRLLQGDVG 294

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AAV +G Q  +M P  ILA+QH + ++     T + V ++T ++    
Sbjct: 295 SGKTVVAAIVLYAAVLSGYQGALMVPTEILAEQHAQSLQTLFAPTDVTVALLTSSVKGKR 354

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           R++ LE++A G   I++GTHAL Q+ + + KL LVI DEQHRFGV+QR  L +K  AP V
Sbjct: 355 RKEILEQLACGTIDIVVGTHALIQEEVNFQKLGLVITDEQHRFGVEQRRILREKGQAPDV 414

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRK ++T  +  +  + V++ ++  + +G+
Sbjct: 415 LMMTATPIPRTLAITAFGEMDVSVIDEMPAGRKKVQTYWVKHHMFERVLDFMEKEIQKGR 474

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  ++    +I ++HGR+S  +KE VM +F    
Sbjct: 475 QAYVICPLIEESEKLDVQNAIDVHSMLTHYYRGKYNIGLMHGRLSSEEKEEVMKAFSENR 534

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+E S CIL+  P  S
Sbjct: 535 IQVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDEQSYCILIADPK-S 593

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSGMP+F      +HD  +LE+AR
Sbjct: 594 ETGKERMRIMTETTDGFVLSEKDLQLRGPGDFFGTKQSGMPEFKFGDV-VHDYRILEVAR 652

Query: 661 KDAKHIL 667
            DA  ++
Sbjct: 653 NDAAKLV 659


>gi|268609076|ref|ZP_06142803.1| ATP-dependent DNA helicase RecG [Ruminococcus flavefaciens FD-1]
          Length = 678

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 246/689 (35%), Positives = 377/689 (54%), Gaps = 41/689 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFID-RHYRPKI-SEIS 65
           LF+ +   +GVGK       K+ IN          +L+++ P +++D R Y P   ++I+
Sbjct: 5   LFSEIEYLKGVGKARGEKYRKLGINSP-------YELIYHIPRTYLDFRAYVPVAQAKIN 57

Query: 66  EERIVTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVF-FEG 120
           E  ++ +T Y         Q+ R      K    DG  +I ++ +        NVF F+ 
Sbjct: 58  EYNVLKLTVY----KKMPPQRIRGGLVICKAAATDGMDDILIVVY-------NNVFGFQS 106

Query: 121 RKITVT----GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
            K   T    GK+     R  +  P +I   ++ V   LI+ VY L  GLSV++ +  + 
Sbjct: 107 LKENETYYMYGKVSGNFLRREISAPVFI-SAAEKV---LIQPVYPLTQGLSVNMVRTNMK 162

Query: 177 EALSRLPVLP-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           +AL  +   P E +   +++K     +  A   IH P      E +  AR+RLA+DELL 
Sbjct: 163 QALELMRADPFETLPGAVMEKYDLCPLMTALENIHFPESE---EASEAARQRLAFDELLK 219

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q+ + LM+ + ++     ++     A      +PF  T  Q+ A+ +++ D+ +   M 
Sbjct: 220 LQLGMSLMKSRSRRSTAYKMD-SSISAAPFTEGLPFELTDDQKKAVSEVISDLCRDVPMN 278

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT VA  A     + G QA +MAP  ILA QHY  + ++ +   + V ++
Sbjct: 279 RLLQGDVGSGKTAVAAAACYFTAKNGAQAALMAPTEILASQHYRTLSEFLEPFGVKVCLL 338

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    +    E+I  G+  +I+GTHA+ Q  ++Y  L LVI DEQHRFGV QR  L 
Sbjct: 339 TGSLTAKKKAVIREQILSGEIDVIVGTHAIIQKDVEYRALGLVITDEQHRFGVAQRAALA 398

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K  +PH L+M+ATPIPRTL L   GD+DIS IT+ P GRKP++T  +           +
Sbjct: 399 EKGDSPHKLVMSATPIPRTLALIIYGDLDISAITQLPKGRKPVQTYAVTGKLRHRAFGFV 458

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           K  L EG++AY +CP IE+ +   F       N+        S A++HGRM   +KE VM
Sbjct: 459 KARLDEGRQAYVVCPMIEDSESDLFAVKSYAENAAKGDLKGYSTALLHGRMRAAEKEKVM 518

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            SF++G  ++LI TTV+EVG+DV +A++++IENAE FGL+QLHQLRGRVGRG+  SSCIL
Sbjct: 519 KSFRDGEIQVLICTTVVEVGVDVPNAAVMVIENAERFGLSQLHQLRGRVGRGQYESSCIL 578

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +     S++   R+ ++ +T DGF I+EEDLK R  G+  G  Q G+P   IA    +  
Sbjct: 579 ITD-NTSEDCVKRMKIMSSTSDGFKISEEDLKMRGPGDFFGSAQHGLPPLKIADIACNME 637

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+  A+  A+ +L  DP L S   +++++
Sbjct: 638 LMNKAQNCARELLEADPQLNSPENRALKM 666


>gi|222055696|ref|YP_002538058.1| ATP-dependent DNA helicase RecG [Geobacter sp. FRC-32]
 gi|221564985|gb|ACM20957.1| ATP-dependent DNA helicase RecG [Geobacter sp. FRC-32]
          Length = 770

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 245/699 (35%), Positives = 379/699 (54%), Gaps = 38/699 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG K +  L+K         +   D LF  P  + DR     +S++S+ R
Sbjct: 68  LQTPMQFIKGVGPKLAEQLAK------KGISVVEDALFLLPHRYEDRR---SLSKVSKLR 118

Query: 69  IVTITGYISQHSSFQLQK----RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
                 + ++  SF+ +     +R  ++   D +G ITL +F      +K  +  GRK  
Sbjct: 119 PGAHEVFYAEVLSFEAKSTKGGKRFLEVTAGDESGSITLKWFRFNPVFMKKTWRVGRKGV 178

Query: 125 VTGKIKKLKNRIIMVHPHYIFHN---------SQD-VNFPLIEAVYSLPTGLSVDLFKKI 174
            TG++ +   +  + HP   + +         ++D +NF  I  VY L  GL     +K+
Sbjct: 179 FTGEVVQYGFQKEIHHPEVEWLDEGADLAALTARDPLNFGRILPVYPLTEGLHQKTLRKV 238

Query: 175 IVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLA 229
           + E + R  + +   +   ++++     + EA    H P    D        + A +  +
Sbjct: 239 MKEVIDRFVIDVENHLPLGVMERHHLMPLDEALRETHFPGHDADLARLNNGATVAHKTFS 298

Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
           +DEL   ++ L L R     E GI   V  K  +++L+ +PF  T +Q   + +I  DM 
Sbjct: 299 FDELFFLELGLALKRSGIVLEQGIAFQVTHKYTRELLKLLPFHLTDAQRRVLSEIKNDMM 358

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
             + M R++QGDVG GKTLVAL+A   AVE   Q  IMAP  ILA+QH+  I ++     
Sbjct: 359 LPHPMHRLVQGDVGCGKTLVALMAALVAVENDYQVAIMAPTEILAEQHFLTIHRWCDALG 418

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           I V ++T  M    +   LE IA G+  I+IGTHA+ Q+ +++ +L L I+DEQHRFGV 
Sbjct: 419 IKVSLLTSGMKGKAKSAVLEEIAAGRTSIVIGTHAVIQEKVEFNRLGLGIIDEQHRFGVL 478

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR  L +K   P +L+MTATPIPRTL +T  GD+ +S I E P GR P++T +   +R  
Sbjct: 479 QRGILKRKGINPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPVETRVAFESRRS 538

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS------IAIIHG 523
           +V   ++  + +G++AY I P +EE ++S  ++  +    + EH          + ++HG
Sbjct: 539 QVYGIIREEVKKGRQAYIIYPLVEETEKSELKAAAQ----MAEHLARDVFPELRVGLLHG 594

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           RM   +KESVM +FK     +L+ATTVIEVGIDV +A+++++E+AE FGL+QLHQLRGRV
Sbjct: 595 RMKPEEKESVMGAFKARETDILVATTVIEVGIDVPNATVMVVEHAERFGLSQLHQLRGRV 654

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG   S CILL    LS++   RL V+++T DGF IAE DL+ R  G+ LG +Q+G+P 
Sbjct: 655 GRGSGQSRCILLSSGQLSEDGEKRLRVMESTNDGFRIAEADLEIRGPGDFLGTRQAGLPD 714

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           F +A       +LE AR +A  ++ +DP L       +R
Sbjct: 715 FRVANILRDGRILEAARGEAFAVVERDPGLVDGENAGLR 753


>gi|311068108|ref|YP_003973031.1| ATP-dependent DNA helicase RecG [Bacillus atrophaeus 1942]
 gi|310868625|gb|ADP32100.1| ATP-dependent DNA helicase RecG [Bacillus atrophaeus 1942]
          Length = 681

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 237/652 (36%), Positives = 373/652 (57%), Gaps = 24/652 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGE 100
           DLL Y P  + D   R  + ++  +  VT+ G +    S     +KR      L  G   
Sbjct: 32  DLLNYFPYRYDDYELR-DLEDVKHDERVTVEGKVHSEPSLTYYGKKRNRLTFRLLVGHYL 90

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           IT + F R    LK     G  +T++GK  K + + IMV       N        IE VY
Sbjct: 91  ITAVCFNRP--YLKKKLSLGSVVTISGKWDKHR-QTIMVQE---LKNGPHQEDKSIEPVY 144

Query: 161 SLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           S+   ++V + ++ I +ALS+ L  + + + + L      P   +A   +H P   +  +
Sbjct: 145 SVKENVTVKMMRRFIQQALSQYLDTMSDPLPEKLRLHYKLPDYHQALKTMHQPETRESLK 204

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQE 278
               AR R  Y+E L  Q+ +   RK  +++  GI  +   +     + ++PF  T +Q 
Sbjct: 205 ---QARRRFVYEEFLLFQLKMQAFRKAEREQSQGIKHHFSNEELMSFVESLPFPLTNAQS 261

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             ++DI  DMS   RM R+LQGDVGSGKT VA IA+ AA+ +G Q  +M P  ILA+QH 
Sbjct: 262 RVLRDITADMSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQHA 321

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +    +N  + + ++T ++    RR+ LER+  G   I++GTHAL QD +++  L LV
Sbjct: 322 DSLVALFENWNVNIALLTSSVKGKRRRELLERLQAGDIDILVGTHALIQDEVEFKALGLV 381

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I DEQHRFGV+QR KL  K   P VL MTATPIPRTL +T  G++D+S I E PAGRK I
Sbjct: 382 ITDEQHRFGVEQRKKLRNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKQI 441

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-- 516
           +T  +  + +D ++  ++  + +G++AY ICP IEE  + + ++ ++ +N L E +    
Sbjct: 442 ETYWVKHDMLDRILSFIEKEVRQGRQAYIICPLIEESDKLDVQNAIDVYNMLSEVYRGKW 501

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++ ++HG++   +K+ VM  F    C++L++TTV+EVG++V +A+I++I +A+ FGL+QL
Sbjct: 502 NVGLMHGKLHSDEKDQVMREFSANECQILVSTTVVEVGVNVPNATIMVIYDADRFGLSQL 561

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRGE  S CIL+  P  S+    R+ ++  T DGF ++E+DL+ R  G+  G 
Sbjct: 562 HQLRGRVGRGEYQSFCILMADPK-SETGKERMRIMSETNDGFELSEKDLELRGPGDFFGK 620

Query: 637 KQSGMPKFLIAQPELHD-SLLEIARKDAKHILT-----QDPDLTSVRGQSIR 682
           KQSGMP+F +A   +HD   LE AR+DA  +++      +P+  ++R Q ++
Sbjct: 621 KQSGMPEFKVADM-VHDYRALETARQDAADLVSSEAFWNEPEYQALREQLLK 671


>gi|312279039|gb|ADQ63696.1| ATP-dependent DNA helicase recG, transcription-repair coupling
           factor, putative [Streptococcus thermophilus ND03]
          Length = 672

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 247/673 (36%), Positives = 388/673 (57%), Gaps = 34/673 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEE 67
           L +P++  +G G K +   +K+      +     DLL Y P  + D  ++ K I E+ + 
Sbjct: 4   LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYED--FKSKSIFELMDG 55

Query: 68  RIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               ITG +   ++ Q    KR      +  G   I + FF +    L + F  G ++ +
Sbjct: 56  EKAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAINFFNQP--YLVDKFEVGAEVAI 113

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-VDLFKKIIVEALS-RLP 183
            GK  + K+ +  +    + H   D     ++ VY +  G+S   L K I V   S  L 
Sbjct: 114 FGKWDRKKSAVTGMK--VLAHVEDD-----MQPVYHVAQGVSQAQLIKAIKVAFDSGALN 166

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           +L E + + L+ K       EA  ++H P   KD      A  R+ ++EL   Q+ L ++
Sbjct: 167 LLEESLPQVLMDKYRLMGRQEAVRVMHFP---KDLAEYKQALRRIKFEELFYFQMNLQVL 223

Query: 244 RKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           + + K E  G+ I+  E KI  KI   +PF  TK+QE ++ +IL DM     M R+LQGD
Sbjct: 224 KAENKSETNGLAISYDEVKIKAKI-ATLPFPLTKAQERSLSEILADMKSGAHMNRLLQGD 282

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT++A +AM  A  AG Q+ +M P  ILA+QHY+ +K      +++  ++T  M  
Sbjct: 283 VGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSLKGLFPELKVV--LLTSGMKM 340

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A ++ AL +I  G+A +I+GTH+L QD++ Y+KL LVI DEQHRFGV QR    +K   P
Sbjct: 341 ADKKVALSKIESGEAQMIVGTHSLIQDAVIYHKLGLVITDEQHRFGVNQRRIFREKGDNP 400

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL +T+ G++D+S I + PAGRK I T  +   ++D V+  +K  L +
Sbjct: 401 DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKTIITRWVKHEQLDTVLTWIKSELEK 460

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
             + Y+I P IEE +  + ++ V     L E F  ++++A++HGRM + +K+ +M  FK+
Sbjct: 461 DAQVYFISPLIEESESLDLKNAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKD 520

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L+ +P 
Sbjct: 521 KKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVLVANPK 580

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +     R+  +  T DGF++AEEDLK R  GEI G +QSG+P+F +A      ++LE A
Sbjct: 581 -NDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEA 639

Query: 660 RKDAKHILTQDPD 672
           R  A  I++ DP+
Sbjct: 640 RCVASQIVS-DPN 651


>gi|290893059|ref|ZP_06556048.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J2-071]
 gi|290557419|gb|EFD90944.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J2-071]
          Length = 682

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 242/681 (35%), Positives = 386/681 (56%), Gaps = 25/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEW 188
           K + ++           N ++     +E VY L   L     +K    A  S    + E 
Sbjct: 120 KSRAQVTASKIKIGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P   K+ E    AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPTNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWDTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+DA 
Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAV 649

Query: 665 HILTQDPDLTSVRGQSIRILL 685
           H++ ++  L +   + +  LL
Sbjct: 650 HMIFEEDMLENKNYEKLVALL 670


>gi|224500042|ref|ZP_03668391.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes Finland
           1988]
 gi|254829194|ref|ZP_05233881.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL N3-165]
 gi|254831587|ref|ZP_05236242.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes 10403S]
 gi|254899492|ref|ZP_05259416.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes J0161]
 gi|254912369|ref|ZP_05262381.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes J2818]
 gi|254936696|ref|ZP_05268393.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes F6900]
 gi|258601604|gb|EEW14929.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL N3-165]
 gi|258609293|gb|EEW21901.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes F6900]
 gi|293590351|gb|EFF98685.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes J2818]
          Length = 682

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 242/680 (35%), Positives = 386/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWI 189
           K + ++           S++     +E VY L   L     +K    A  S    + E I
Sbjct: 120 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEVI 175

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248
             +LL+K       EA  I+H P   K+ E    AR R+ Y+E L  Q+ +   RK + +
Sbjct: 176 PGNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIERE 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT+
Sbjct: 233 KSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTV 292

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ L
Sbjct: 293 VASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELL 352

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 353 AMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMTA 412

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y I
Sbjct: 413 TPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYII 472

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L+
Sbjct: 473 CPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCLV 532

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++    
Sbjct: 533 STTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGKE 591

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665
           R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+DA H
Sbjct: 592 RMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 651 MIFEEDMLENKNYEKLVALL 670


>gi|217964036|ref|YP_002349714.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes HCC23]
 gi|217333306|gb|ACK39100.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes HCC23]
          Length = 682

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 239/666 (35%), Positives = 380/666 (57%), Gaps = 25/666 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEW 188
           K + ++           N ++     +E VY L   L     +K    A  S    + E 
Sbjct: 120 KSRAQVTASKIKIGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P   K+ E    AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPSNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+DA 
Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAV 649

Query: 665 HILTQD 670
           H++ ++
Sbjct: 650 HMIFEE 655


>gi|47096532|ref|ZP_00234122.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes str. 1/2a
           F6854]
 gi|47015064|gb|EAL06007.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes str. 1/2a
           F6854]
          Length = 697

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 242/680 (35%), Positives = 386/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 23  PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 75

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 76  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 134

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWI 189
           K + ++           S++     +E VY L   L     +K    A  S    + E I
Sbjct: 135 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEVI 190

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248
             +LL+K       EA  I+H P   K+ E    AR R+ Y+E L  Q+ +   RK + +
Sbjct: 191 PGNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIERE 247

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT+
Sbjct: 248 KSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTV 307

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ L
Sbjct: 308 VASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELL 367

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 368 AMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMTA 427

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y I
Sbjct: 428 TPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYII 487

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L+
Sbjct: 488 CPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCLV 547

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++    
Sbjct: 548 STTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGKE 606

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665
           R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+DA H
Sbjct: 607 RMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAVH 665

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 666 MIFEEDMLENKNYEKLVALL 685


>gi|261879120|ref|ZP_06005547.1| DNA helicase RecG [Prevotella bergensis DSM 17361]
 gi|270334216|gb|EFA45002.1| DNA helicase RecG [Prevotella bergensis DSM 17361]
          Length = 700

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 240/668 (35%), Positives = 381/668 (57%), Gaps = 23/668 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG K    LSK +N        + DLL Y+P  ++DR    +I E+S E   V + G I
Sbjct: 14  GVGPKKKEILSKELNIHT-----WGDLLEYYPYKYVDRTKIYRIMELSGEMPFVQVKGKI 68

Query: 77  SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
                F +  R+   +    DG G + L++F     + KN +  G +  V GK    + R
Sbjct: 69  LSFEEFPMSARKKRVVAHFTDGFGIVDLVWFRGAQYVYKN-YKVGEEYIVFGKPSVYQGR 127

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALSRLP--VLPEW 188
               HP              ++  Y+        G+     +++    +SR+P   + E 
Sbjct: 128 YQFAHPEIDRVADLKTEEMRMQPYYNTTETMKKRGMQSRAVERLTKTLVSRIPEGAIQEA 187

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   ++ + +  S  +A+  IH P+   D +    A+ RL  +EL   Q+++L    + +
Sbjct: 188 LLPSMVSRLNLISREDAYRKIHYPKSLDDVQ---RAQVRLKLEELFYVQLSILRYASEHR 244

Query: 249 KEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           ++  G   +  G I  +    N+PF  T++Q+  + +I  DM   ++M R+LQGDVGSGK
Sbjct: 245 RKYKGYVFDKIGAIFNQFFHENLPFDLTQAQKRVMHEIRDDMRSGHQMNRLLQGDVGSGK 304

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVAL+ M  A++ G QA IMAP  ILA+QH + I+ + +N  + VE++TG +    R++
Sbjct: 305 TLVALMTMLIAIDNGFQACIMAPTEILAEQHLDTIRTFLRNMPVRVELLTGIVKGKKRKE 364

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLL 425
            L+ +A G   I++GTHA+ +D++Q+ +L + +VDEQHRFGV QR KL  K+   PH+L+
Sbjct: 365 ILQNLAEGNIDILVGTHAIIEDTVQFKRLGMAVVDEQHRFGVAQRAKLWAKSENPPHILV 424

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  GD+D+S I E P GRKPI T+    N+   +   ++  + EG++ 
Sbjct: 425 MTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIMTIHKYDNQTVSLYNGIRQQVREGRQV 484

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           Y + P IEE ++S+ +++ + +  L E F    ++ +HGRM   +KES M  F +G  ++
Sbjct: 485 YIVFPLIEESEKSDLKNLEDGYKKLCEIFPEFRLSKVHGRMKSSEKESEMQKFVSGETQI 544

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S C+L+    LS  +
Sbjct: 545 LVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCLLVTGYELSTET 604

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDA 663
             R+ ++ +T DGF IAE DLK R  G++ G +QSG+   L IA       L+++AR +A
Sbjct: 605 RKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLVQLARNEA 664

Query: 664 KHILTQDP 671
           + I+  DP
Sbjct: 665 QKIIDDDP 672


>gi|283797869|ref|ZP_06347022.1| ATP-dependent DNA helicase RecG [Clostridium sp. M62/1]
 gi|291074560|gb|EFE11924.1| ATP-dependent DNA helicase RecG [Clostridium sp. M62/1]
 gi|295091919|emb|CBK78026.1| ATP-dependent DNA helicase RecG [Clostridium cf. saccharolyticum
           K10]
          Length = 722

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 233/674 (34%), Positives = 370/674 (54%), Gaps = 27/674 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID-RHYRPKISEISE---- 66
           PL+  +GVG+K +   SK+      N T   +LL Y+P ++   R  +P  S + E    
Sbjct: 43  PLTAIKGVGEKTARLFSKL------NVTNVEELLHYYPRAYDAFREPQPVKSLVPETTAA 96

Query: 67  -ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
            E ++T T  + + S  Q+       + L D TG + L ++      L++    G +   
Sbjct: 97  VEGVLTKTADVVRFSHLQVTM-----VHLRDETGTVQLNWY--NMPFLRSTLKAGERFVF 149

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            GK+ K + +++M  P              ++ VY    GL      K + +ALS   + 
Sbjct: 150 RGKVAKKRGKLVMEQPEIYRPAQYSALVHSMQPVYGQTKGLGNKTIAKAVAQALSERELE 209

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            +++ + L +K        A   IH P+   +  ++   R+RL +DE     +++ L+++
Sbjct: 210 RDYMPERLREKYELAEYNFALEHIHFPKDEAELLFS---RKRLVFDEFFMFLLSVRLLKE 266

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           +      + +       Q++  ++P+S TK+QE  +K++  D+S    M R++QGDVGSG
Sbjct: 267 KKADTKSLYVMEPRPEVQRLKDSLPYSLTKAQEKVLKEVYADLSGGQVMNRLVQGDVGSG 326

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY--TQNTQIIVEIITGNMPQAH 363
           KT++A++A+  A   G Q  +M P  +LA+QH E +++       +    ++TG+M    
Sbjct: 327 KTIIAILALLQAAYNGYQGALMVPTEVLARQHLESMEELFAAHGIEKKAILLTGSMTAKE 386

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R A ++I   +A II+GTHAL Q+ + Y KL LVI DEQHRFGV QR  L  K T PHV
Sbjct: 387 KRMAYQKIESHEADIIVGTHALIQEKVIYDKLALVITDEQHRFGVAQREMLGNKGTEPHV 446

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL +   GD+DIS I E PA RKPIK  ++  +        ++   + G+
Sbjct: 447 LVMSATPIPRTLAIIIYGDLDISIIDELPANRKPIKNCVVGTDYRKNAYRFIEREAAAGR 506

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGT 541
           +AY ICP +E  +     +VV+    L E+   S+ +  +HG+M   +K  +M+ F  G 
Sbjct: 507 QAYVICPMVEPSEMIEAENVVDYTKKLRENLPESVRVEYLHGKMKPKEKNLLMEQFAEGE 566

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVGI+V +A++++IENAE FGLAQLHQLRGRVGRG+E S CI++ +    
Sbjct: 567 IQVLVSTTVIEVGINVPNATVMMIENAERFGLAQLHQLRGRVGRGKEQSYCIMV-NASSD 625

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    RL +L  + DGF IA EDLK R  G+I GI+QSG  +F +        LL+   +
Sbjct: 626 EGIQKRLEILNKSNDGFFIASEDLKLRGPGDIFGIRQSGELEFKLGDIFTDADLLKTVSE 685

Query: 662 DAKHILTQDPDLTS 675
           + + IL  DPDL+ 
Sbjct: 686 EVREILDADPDLSG 699


>gi|325299884|ref|YP_004259801.1| ATP-dependent DNA helicase RecG [Bacteroides salanitronis DSM
           18170]
 gi|324319437|gb|ADY37328.1| ATP-dependent DNA helicase RecG [Bacteroides salanitronis DSM
           18170]
          Length = 699

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 249/681 (36%), Positives = 386/681 (56%), Gaps = 40/681 (5%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74
            +GVG + +  L K +N  +     F DLL+Y P  ++DR     I EI      + + G
Sbjct: 12  LQGVGPQRAAVLEKELNIRS-----FKDLLYYFPYKYVDRSRLYYIHEIDGNMPYIQLRG 66

Query: 75  YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR-----KITVTGKI 129
            I    +F   ++R      +DGTG + L++F    + LK  F EG+        V GK 
Sbjct: 67  QILSFETFGEGRQRRLVGHFSDGTGVVDLVWF----QGLK--FVEGKYKAHEPYIVFGKP 120

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGL--------SVDLFKKIIVEALSR 181
                RI + HP     +   ++   ++  Y+    +        +V+   K +  AL R
Sbjct: 121 TVFNGRINIAHPDIDPADELVLSNMGLQPYYNTTEKMKRSNLNSHAVEKLMKNLFAALQR 180

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
             V+ E +   L+++     +++A + IH P+     +    A+ RL ++EL   Q+ +L
Sbjct: 181 -EVIEETLSPQLIEQHRLMPLSDALHNIHFPQNP---DLLRRAQYRLKFEELFYVQLNIL 236

Query: 242 LM----RKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
                 R +F+   G+     G+I      +N+PF  T +Q+  IK++ +DM    +M R
Sbjct: 237 RYTLERRNKFR---GLVFGTVGEIFHTFYEQNLPFQLTGAQKRVIKEMRRDMKSGRQMNR 293

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKTLVAL+ M  A++ G QA +MAP  ILA QHYE I ++     + VE++T
Sbjct: 294 LLQGDVGSGKTLVALMTMLIALDNGYQACMMAPTEILANQHYETITRFLAGMPVRVELLT 353

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           GN+    R   L  +  G+  I+IGTHA+ +D++ +  L LV++DEQHRFGV QR KL +
Sbjct: 354 GNVKGKKRETILRDLVTGEVQILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRAKLWK 413

Query: 417 KATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           K T  PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    NR   +   +
Sbjct: 414 KNTCPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRRALLYAFI 473

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           +  L EG++AY + P I+E ++ + +++ + +  + E F    ++ +HG+M   +K++ M
Sbjct: 474 RKQLQEGRQAYIVYPLIQESEKMDIKNLEDGYLHVCEAFPEYKVSKVHGKMKAAEKDAEM 533

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F     ++L+ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL
Sbjct: 534 QRFVENETQILVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCIL 593

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHD 653
           +    L++++  R+ ++ +T DGF IAE DLK R  G++ G +QSG+   L IA      
Sbjct: 594 VTGYKLTEDTRKRIQIMVDTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDG 653

Query: 654 SLLEIARKDAKHILTQDPDLT 674
            LL+  R+ A+H+L  DP  T
Sbjct: 654 QLLQYVREIAEHLLEADPQGT 674


>gi|332981575|ref|YP_004463016.1| ATP-dependent DNA helicase RecG [Mahella australiensis 50-1 BON]
 gi|332699253|gb|AEE96194.1| ATP-dependent DNA helicase RecG [Mahella australiensis 50-1 BON]
          Length = 691

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 224/644 (34%), Positives = 369/644 (57%), Gaps = 21/644 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+   +GVG + +  L+K+      +     D++++ P  + DR     IS     ++V 
Sbjct: 9   PVQYIKGVGPRRARLLNKL------DIYTLADVIYHFPRDYEDRTEIMPISRWQSGQVVN 62

Query: 72  ITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I   I+        + R    KI + DGT     +++ +K   +++ F  G+   + GK+
Sbjct: 63  IVCKIAGPPRRVKPRARLIISKIPIQDGTSSAYAVWYNQK--FIEDRFVPGKWYFMRGKV 120

Query: 130 KKLKNRIIMVHPHYIFHNSQDV--NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLP 186
                 I +++P +   +S D   N  L+  +Y     +S  + + I+   L  +     
Sbjct: 121 NIGYGEIQLLNPQWEEISSPDERGNEGLV-PIYPSTADMSQKILRNIVKNVLELVKGQWE 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-K 245
           E++  +L ++     I  A N IH P  A+     + AR RLA+DEL   Q+    ++ K
Sbjct: 180 EYLPIELRKRYDLAEINFAINNIHFPVNARSL---NIARRRLAFDELFCMQLGFYSIKGK 236

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
              +++G P  +     +  +R +PF+ T +Q+  + +IL DMS    M R++QGDVG G
Sbjct: 237 NDVQKVGAPFRIHDIGLEAFIRRLPFALTGAQQRVLDEILADMSNTRPMNRLVQGDVGCG 296

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT++A++A+  A     Q  +MAP  +LAQQH++ ++K+     I + +++GNM +  + 
Sbjct: 297 KTILAVLALYVAASNCYQGAMMAPTEVLAQQHFQTLQKFFDGYDISIALLSGNMGENKKN 356

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE I  G+  +++GTHA+ QD++++++L LVI DEQHRFGV+QR  L +K   PHVL+
Sbjct: 357 EVLEAIKDGRIDVVVGTHAVIQDNVEFHRLGLVITDEQHRFGVRQRAVLEKKGGNPHVLV 416

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPR++ L   GD+D+S + E P GR+ ++T  IP +  D +   +   +S G +A
Sbjct: 417 MSATPIPRSMALIFYGDLDVSIVDEMPPGRQQVETFFIPPSMRDRLYSFINQEISNGHQA 476

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP +E+    +  S  E ++ L E   F  SI +IHG+MS  DK  VM++FKNG   
Sbjct: 477 YIICPLVEQSDAIDALSAQELYDQLKEKGIFGDSIGLIHGQMSANDKNEVMEAFKNGQIS 536

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +LI TTVIEVG+DV +A+++++ENAE FGLAQLHQLRGRVGRG+  S C L+ +   S +
Sbjct: 537 VLIGTTVIEVGVDVPNATVMVVENAERFGLAQLHQLRGRVGRGQHKSYCFLISNAGNS-D 595

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           +  RL ++    DGF IAE+D++ R  G++LG++Q G+ +  +A
Sbjct: 596 AGRRLKIMTKLHDGFKIAEQDMQIRGPGQLLGLQQHGISELKLA 639


>gi|312111714|ref|YP_003990030.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y4.1MC1]
 gi|311216815|gb|ADP75419.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y4.1MC1]
          Length = 705

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 236/667 (35%), Positives = 384/667 (57%), Gaps = 33/667 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G++ S  L ++        T   +LL + P  + D   +  ++E+  +  VT
Sbjct: 31  PVTAIKGIGEETSEALREM------GITTIEELLMHVPYRYEDYEVK-DLAEVKHDEKVT 83

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +    S     ++  ++      G   IT++ F R    LK        +TV+GK 
Sbjct: 84  VEGKVYSEPSLTYYAKKKSRLAFRLLVGRYLITVVCFNRP--YLKQKLSINDTVTVSGKW 141

Query: 130 KKLKNRIIMVHPHYIFHNSQDVN-FPL---IEAVYSLPTGLSVDLFKKIIVEALSRL-PV 184
            +        H   I  N   +   P    +E VYS+   ++V   ++ I  AL++    
Sbjct: 142 DR--------HRQTITANELKMGALPQKRELEPVYSVRGSVTVKGMRRFIQLALTQYGEA 193

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + + +   + Q     S  EA   IH PR  ++ +    AR RL Y+E L  Q+ +  +R
Sbjct: 194 IIDPLPLSMRQTYRLISKQEAIRAIHFPRSHEELK---QARRRLVYEEFLLFQLKIHALR 250

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K Q +   GI  +   +     +  +PF  TK+Q+  +++IL DM    RM R+LQGDVG
Sbjct: 251 KVQREHSQGIAHSFSPEKLHDFIDRLPFPLTKAQQRVVREILTDMQSPYRMNRLLQGDVG 310

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AAV +G Q  +M P  ILA+QH + ++     T + V ++T ++    
Sbjct: 311 SGKTVVAAIVLYAAVLSGYQGALMVPTEILAEQHAQSLQTLFAPTDVTVALLTSSVKGKR 370

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           R++ LE++A G   I++GTHAL Q+ + + KL LVI DEQHRFGV+QR  L +K  AP V
Sbjct: 371 RKEILEQLACGTIDIVVGTHALIQEEVNFQKLGLVITDEQHRFGVEQRRILREKGQAPDV 430

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRK ++T  +  +  + V++ ++  + +G+
Sbjct: 431 LMMTATPIPRTLAITAFGEMDVSVIDEMPAGRKKVQTYWVKHHMFERVLDFMEKEIQKGR 490

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  ++    +I ++HGR+S  +KE VM +F    
Sbjct: 491 QAYVICPLIEESEKLDVQNAIDVHSMLTHYYRGKYNIGLMHGRLSSEEKEEVMKAFSENR 550

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+E S CIL+  P  S
Sbjct: 551 IQVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDEQSYCILIADPK-S 609

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSGMP+F      +HD  +LE+AR
Sbjct: 610 ETGKERMRIMTETTDGFVLSEKDLQLRGPGDFFGTKQSGMPEFKFGDV-VHDYRILEVAR 668

Query: 661 KDAKHIL 667
            DA  ++
Sbjct: 669 NDAAKLV 675


>gi|261393122|emb|CAX50727.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis 8013]
          Length = 680

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 227/600 (37%), Positives = 340/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + D +G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADDSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHLPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I + P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDKLPPGRTPIKTRLVNNVRRTEVEGFVLGTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEI 662


>gi|148242370|ref|YP_001227527.1| ATP-dependent DNA helicase RecG [Synechococcus sp. RCC307]
 gi|147850680|emb|CAK28174.1| ATP-dependent DNA helicase [Synechococcus sp. RCC307]
          Length = 836

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 242/684 (35%), Positives = 390/684 (57%), Gaps = 34/684 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           PLS  +G+G K +  L+++ + C         DL+ Y+P  ++D     +I  +      
Sbjct: 141 PLSELKGIGPKLATRLAQLGLFC-------LEDLIGYYPRDYVDYSRLVRIQALVPGETA 193

Query: 71  TITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFF-----YRKTEML---KNVFFE 119
           T+   + +  +F   K     IL   L D +G + +  F     +  +  L   + ++  
Sbjct: 194 TVVATVRRVHAFASPKNPNLAILELQLQDPSGRLRISKFMAGKRFTSSGWLHQQQRLYPP 253

Query: 120 GRKITVTGKIKKLKNRIIMVHP--HYIFHNSQDVNFPLIE---AVYSLPTGLSVDLFKKI 174
           G  I  +G +K+ +  I +  P    +   +  V  P I     +Y+L  GL+ +  ++ 
Sbjct: 254 GATIAASGLVKENRFGISLHDPLLEVLEGPASQVQSPEIGRLVPIYALTEGLTAERLRQA 313

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           +  AL+ +   P+ + +   Q+ +  + A+A + IH P    + E     R RL +DE L
Sbjct: 314 VAAALAAVRPGPDPLPEPWRQQLTLVAKADARSGIHQP---SNREHLDACRRRLVFDEFL 370

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKI--LRNI-PFSPTKSQESAIKDILQDMSQK 291
             Q+ L   R Q+++    P    G I +++   RN+ PF  T +QE  + ++L DM Q 
Sbjct: 371 LLQLNLAQRRLQYRQRQA-PAVPAGAIGERLKAFRNLLPFQFTGAQERVLNELLADMGQP 429

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVGSGKT+VA+ A+ AA++AG Q   MAP  +LAQQHY  + ++     + 
Sbjct: 430 KPMARLVQGDVGSGKTVVAIAALLAAIDAGLQGAFMAPTEVLAQQHYAKLCEWMPQLHVN 489

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V ++TG+ P   RR  L+ +A+GQ H+++GTHA+ +D + + +L LV+VDEQHRFGV QR
Sbjct: 490 VALLTGSTPAKQRRALLQDLANGQLHLLVGTHAVLEDPVDFARLGLVVVDEQHRFGVGQR 549

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            +L  K   PH+L MTATPIPRTL L+  GD+D+S+I   P GR+PIKT ++   +  + 
Sbjct: 550 NRLLSKGLQPHLLTMTATPIPRTLALSIHGDLDVSQIDALPPGRQPIKTAVLSSAQRPKA 609

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDID 529
              ++  ++EG++AY + P +EE ++ + RS V+  + L +       + ++HGR+S  +
Sbjct: 610 DALIREQINEGRQAYVVLPLVEESEKLDLRSAVDEHSRLQQEVFPDLQVGLLHGRLSSAE 669

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+  +++F  G  +LL++TTV+EVG+DV +A++++I++AE FGLAQLHQLRGRVGRG   
Sbjct: 670 KQQAIEAFSRGETQLLVSTTVVEVGVDVPNATVMLIDHAERFGLAQLHQLRGRVGRGAAA 729

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C LL +   S  +  RL VL  + DGF IAE DL+ R  GE+LG +QSG+P   +A  
Sbjct: 730 SHC-LLVNDSSSAVAKQRLEVLARSNDGFEIAEMDLRLRGPGEVLGTRQSGLPDLALASL 788

Query: 650 ELHDSLLEIARKDAKHILTQDPDL 673
               S+L+ AR+ A+ IL  DP L
Sbjct: 789 SDDGSVLDEARQTAQAILDADPTL 812


>gi|212550292|ref|YP_002308612.1| ATP-dependent DNA helicase RecG [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549425|dbj|BAG84090.1| ATP-dependent DNA helicase RecG [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 700

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 263/699 (37%), Positives = 395/699 (56%), Gaps = 35/699 (5%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID--RHYR-PKISEIS-EERIVT 71
            +G+G +    L K IN  +       D+L+Y P  + D  + YR  KI EI+ E   V 
Sbjct: 11  LQGIGSQKVEVLEKEINVVSCQ-----DMLYYFPYRYKDQRKSYRVDKIREINIEMSYVQ 65

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I ++S   L   R   I  +DGTG I L++F      +   +    +  V GK++ 
Sbjct: 66  LKGRILRYSR-SLNYPRLSGIF-DDGTGTIELVWF-NSINWVPKYYKIDEEYYVYGKLRF 122

Query: 132 LKNRII-MVHPHYIFHNSQDVNFPLIEAVY---------SLPTGLSVDLFKKIIVEALSR 181
            + + I +V+P              ++ +Y         SL +     + ++I+    ++
Sbjct: 123 FRGKYISIVNPQIKTECKFCEGVTRMQGIYRTTAKMKKASLDSNTISQIMRQIL--EYTK 180

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P L E +   ++ K    S+ EA + IH P+     E    A+ RL ++EL   Q+A L
Sbjct: 181 EP-LSETLPTGIIDKCKLISLDEAIHNIHFPKSDNLLE---QAQYRLKFEELFYVQLANL 236

Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L   + KK++ G   +  G+    +  N+PF  T +QE    +I QDM+   +M R++QG
Sbjct: 237 LNPNRRKKQLDGFCFSKVGENFHFLKNNLPFELTHAQERVFNEIRQDMNTGKQMNRLVQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+++  A++ G Q  IM P  ILA QHYE I    + + + V ++TG+  
Sbjct: 297 DVGSGKTVVALLSILTAIDNGFQGAIMVPTEILATQHYETISHLLEGSTVKVALLTGSTK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-AT 419
              R + L ++  G   I+IGTHAL +DS+++  L LV+VDEQHRFGV QR KL  K +T
Sbjct: 357 NKVREEMLPKVKSGDIQILIGTHALIEDSVEFSNLGLVVVDEQHRFGVTQRAKLWDKNST 416

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PHVL+MTATPIPRT+ +T  GD++IS I E P GRKPI+T  I   + +++ E ++  L
Sbjct: 417 PPHVLVMTATPIPRTMAMTVYGDLNISTIDELPPGRKPIRTYHIYDEKRNKMYEYVREQL 476

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
             GK+ Y + P IEE ++ +  ++ E F ++ + F   SI+ +HG+M   +K   M  F 
Sbjct: 477 KIGKQVYIVYPLIEENEKIDLINLQEGFRAVSKVFPEYSISKVHGQMKPEEKNQEMQKFV 536

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G  +++++TTVIEVGIDV +AS+IIIENAE FGL+QLHQLRGRVGRG E + CIL+ + 
Sbjct: 537 SGETQVMVSTTVIEVGIDVKNASVIIIENAERFGLSQLHQLRGRVGRGTEQAVCILITNY 596

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM-PKFL-IAQPELHDSLL 656
            LSK +  R++V+  T +GF +AEEDLK R  G I+G KQSG  PK L IA      ++L
Sbjct: 597 ELSKEAQKRINVMTKTNNGFEVAEEDLKLRGPGSIIGTKQSGFAPKKLRIANVSKDVNIL 656

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
             AR     IL  DP L   R   ++    L+++N  +Q
Sbjct: 657 IRARNFVYEILNADPALKDPRCNLLK--QQLHKWNTKYQ 693


>gi|328466166|gb|EGF37323.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes 1816]
          Length = 682

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 242/680 (35%), Positives = 385/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWI 189
           K + ++           S++     +E VY L   L     +K    A  S    + E I
Sbjct: 120 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEVI 175

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248
             +LL+K       EA  I+H P   K+ E    AR R+ Y+E L  Q+ +   RK + +
Sbjct: 176 PSNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIERE 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT+
Sbjct: 233 KSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTV 292

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ L
Sbjct: 293 VASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELL 352

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 353 AMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMTA 412

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y I
Sbjct: 413 TPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYII 472

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP I E ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F N     L+
Sbjct: 473 CPLIGESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNNKKIDCLV 532

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++    
Sbjct: 533 STTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGKE 591

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665
           R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+DA H
Sbjct: 592 RMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 651 MIFEEDMLENKNYEKLVALL 670


>gi|289167442|ref|YP_003445711.1| branch migration of Holliday junctions, junction-specific DNA
           helicase,ATP-dependent DNA helicase, recG homolog
           [Streptococcus mitis B6]
 gi|288907009|emb|CBJ21843.1| branch migration of Holliday junctions, junction-specific DNA
           helicase,ATP-dependent DNA helicase, recG homolog
           [Streptococcus mitis B6]
          Length = 671

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 241/674 (35%), Positives = 385/674 (57%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     KII  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKIIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E I + LL K    S  +A   +H P   KD      A  R+ +++L   Q+ L  ++ +
Sbjct: 169 ENIPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEKLFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ ++   +    +  ++PF+ T +QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLDWSQEKVTAVKESLPFALTPAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QAV+M P  ILA+QH+E ++    + ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAVLMVPTEILAEQHFESLQSLFPDLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL +D ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLESIAKGEADLIIGTHALIKDGVEYARLGLIIIDEQHRFGVGQRRVLREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G ++
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQS 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEAWQEDPE 656


>gi|307571393|emb|CAR84572.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes L99]
          Length = 697

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 239/666 (35%), Positives = 380/666 (57%), Gaps = 25/666 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 23  PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 75

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 76  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 134

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEW 188
           K + ++           N ++     +E VY L   L     +K    A  S    + E 
Sbjct: 135 KSRAQVTASKIKIGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 189

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P   K+ E    AR R+ Y+E L  Q+ +   RK + 
Sbjct: 190 IPSNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIER 246

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 247 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 306

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 307 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 366

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 367 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 426

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 427 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 486

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 487 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCL 546

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 547 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 605

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+DA 
Sbjct: 606 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAV 664

Query: 665 HILTQD 670
           H++ ++
Sbjct: 665 HMIFEE 670


>gi|295706317|ref|YP_003599392.1| ATP-dependent DNA helicase RecG [Bacillus megaterium DSM 319]
 gi|294803976|gb|ADF41042.1| ATP-dependent DNA helicase RecG [Bacillus megaterium DSM 319]
          Length = 682

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 238/658 (36%), Positives = 372/658 (56%), Gaps = 35/658 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF----QLQKRRPYKILLNDGT 98
           DLL + P  + D   +  ++E   +  VT+ G +    S     + + R  +++L+N   
Sbjct: 33  DLLEHFPYRYEDYELK-DLAEAKHDEKVTVEGKVHSVPSLTYYGKKRSRLTFRLLVNRYL 91

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP---- 154
             IT+  F R     K+     + +TVTGK  + +  I          N Q++ F     
Sbjct: 92  --ITVTCFNRP--YYKSKLEIDQTVTVTGKWDQHRQTI----------NLQELQFSPFVK 137

Query: 155 --LIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
              IE VYS+   L+V   +K +  AL      + + +   +  +    +  EA   IH 
Sbjct: 138 NQTIEPVYSVKGSLTVKGMRKFVSLALKNYGSSIQDMLPASIRSRYKLVTREEAVRSIHL 197

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIP 270
           PR  +D +    AR R  Y+E L  Q+ +  +RK+ ++E  G+    +          +P
Sbjct: 198 PRDHEDLK---QARRRFVYEEFLLFQLKMQALRKREREETPGMKQAFDSTELVNFTNLLP 254

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T +Q+  + +I  DM    RM R+LQGDVGSGKT+VA +A+ A V AG Q  +M P 
Sbjct: 255 FPLTNAQKRVVNEITHDMKSPYRMNRLLQGDVGSGKTVVAAVALYATVLAGHQGALMVPT 314

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA+QH E +    +   I V ++TG++    RR+ L+R+  G  H+++GTHAL QD +
Sbjct: 315 EILAEQHAESLTAMLEKVGISVGLLTGSVKGKARRELLQRVKDGDVHVLVGTHALIQDEV 374

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            Y  L LVI DEQHRFGV QR  L +K  +P VL MTATPIPRTL +T  G++D+S I E
Sbjct: 375 IYSSLGLVITDEQHRFGVGQRRVLREKGESPDVLFMTATPIPRTLAITVFGEMDVSIIDE 434

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            PAGRK I+T  +  + ++ ++  ++  + +G++AY ICP IEE  + + ++ ++   +L
Sbjct: 435 MPAGRKAIETYWVKHDMLERILHFVEKEIHDGRQAYVICPLIEESDKLDVQNAIDVHATL 494

Query: 511 HEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
             +F   +S+ ++HGR+S  +KE VM  F     ++L++TTV+EVG++V +A++++I +A
Sbjct: 495 AHYFNGKASVGLMHGRLSADEKEEVMKQFSVNDVQILVSTTVVEVGVNVPNATVMVIYDA 554

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E FGL+QLHQLRGRVGRG+  S CILL  P  S+    R++++  T DGF+++E DL+ R
Sbjct: 555 ERFGLSQLHQLRGRVGRGDAQSYCILLADPK-SEVGKERMTIMTETNDGFVLSERDLELR 613

Query: 629 KEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
             G+  G KQSGMP+F +A   +HD   LE+AR+DA  ++  D   T  +   +RI L
Sbjct: 614 GPGDFFGRKQSGMPEFKVADM-VHDYRALEVAREDAAKLVNSDSFWTEDQFALLRIQL 670


>gi|332664350|ref|YP_004447138.1| ATP-dependent DNA helicase RecG [Haliscomenobacter hydrossis DSM
           1100]
 gi|332333164|gb|AEE50265.1| ATP-dependent DNA helicase RecG [Haliscomenobacter hydrossis DSM
           1100]
          Length = 726

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 247/685 (36%), Positives = 390/685 (56%), Gaps = 29/685 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L +P+   +GVG K    L K +         F DLLF +PS +ID+     I++++E
Sbjct: 27  NILDSPIEYLKGVGPKKGELLRKELGVAT-----FGDLLFAYPSRYIDKTQFHHIADLTE 81

Query: 67  ER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           +   V + G + + S+    ++        D +G I+L++F   + + K +   G++  +
Sbjct: 82  DSGSVQLKGVLRRFSTEGEGRKTRLVGQFRDESGAISLVWFTGISWLQKQLII-GQEYVI 140

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVN--------FPLIEAVYSLPTGLSVDLFKKIIVE 177
            G++   K+   + HP     ++++          +P  E + +   GL     +++I  
Sbjct: 141 YGRVNAFKDAYSIPHPEMEVVSTENTQTATAFAPVYPSTEKLNA--QGLDAKSRRRLIKL 198

Query: 178 ALSRL-PV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
            L ++ P  LPE +   +++K  FPS  E+  +IH PR   + + ++    RL ++EL  
Sbjct: 199 LLEKIEPAQLPETLPAYVVKKFHFPSRFESILLIHFPRTEDELKAST---NRLKFEELFF 255

Query: 236 GQIALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNR 293
            Q+ LL ++++ K E+ G      G       +N +PF  T +Q+  +K+I +D     +
Sbjct: 256 LQLRLLQIKRRRKDEVKGYVFEKIGDFFNNFYQNKLPFELTNAQKRVLKEIRRDFGLGIQ 315

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++QGDVGSGKT+VAL+AM  A++ G Q  +MAP  ILAQQH+  I  Y Q++ + V 
Sbjct: 316 MNRLVQGDVGSGKTMVALLAMLMALDNGFQTCMMAPTEILAQQHFISISNYLQDSPVEVA 375

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            ++G++    R+  LER+A G+ HI+IGTHAL +D + +  L L I DEQHRFGV QR  
Sbjct: 376 FLSGSIKGKARKHILERLAAGEIHILIGTHALIEDWVVFKNLGLAITDEQHRFGVAQRAA 435

Query: 414 LTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           L +K     PHVL+MTATPIPRTL +T  GD+DIS I E P GRK I T+    N    V
Sbjct: 436 LWKKNKPFPPHVLVMTATPIPRTLAMTLYGDLDISVIDELPPGRKDIVTLHRTENHRLRV 495

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDI 528
           I  ++  ++ G++ Y + P IEE ++ + ++++  + ++   F +    I+I+HG+M   
Sbjct: 496 IGFMREQIALGRQVYIVYPMIEESEKMDLQNLMSGYEAISREFPTPEFQISILHGKMKAA 555

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           DK+  M  F  G  ++++ATTVIEVG++V +AS+++IEN E FGL+QLHQLRGRVGRG E
Sbjct: 556 DKDFEMQRFVRGETQIMVATTVIEVGVNVPNASVMVIENTERFGLSQLHQLRGRVGRGAE 615

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            S C+L+    LSK+S  R+  +  T +GF IAE DLK R  G++ G +QSG+    +A 
Sbjct: 616 QSYCLLMSSFKLSKDSKERIQTMVRTNNGFEIAEADLKLRGPGDLEGTQQSGIVNLRLAD 675

Query: 649 PELHDSLLEIARKDAKHILTQDPDL 673
                 +L  AR+ A  IL  DP L
Sbjct: 676 LAKDGKILAAAREVAARILDDDPYL 700


>gi|312877022|ref|ZP_07736995.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311796163|gb|EFR12519.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 679

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/613 (37%), Positives = 363/613 (59%), Gaps = 19/613 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101
           DLL++ P  ++D     KI E+ +  I +    ++ +    + +  +  KI + D TG +
Sbjct: 32  DLLWHIPRKYLDYSRLKKIRELCDGEIESFVAKVAGKPVEIETRSVKVIKIPVEDSTGVV 91

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
           T ++F +  + +KNV  EG     +GKI++    I + +P +  ++ Q ++   I  VY+
Sbjct: 92  TTVWFNQ--DYIKNVLKEGEIFCFSGKIERKGFYIEVKNPEFEKYDQQLLHTGRIVPVYN 149

Query: 162 LPTGLSVDLFKKIIVEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
              GLS  + + I+   L +     + ++P +I     QK +   I  A   IH P    
Sbjct: 150 STEGLSQKVIRNIVNNLLHQVDGMLIDIIPPYIR----QKYNLSDINFAIKNIHFPENKL 205

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
             E    AR+RL ++E    Q++LLL+++  +K  GI I       ++  + +PF  T++
Sbjct: 206 SLEL---ARKRLVFEEFYLFQLSLLLLKENIEKNEGIKIENAQSSLKEFEKLLPFELTEA 262

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+  + +I QD+    +M R++QGDVG GKT+VAL +  A ++AG Q  +MAP  +LA Q
Sbjct: 263 QKRVLAEIAQDLESTKQMNRLIQGDVGCGKTVVALASAYATIKAGYQVALMAPTEVLALQ 322

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY   KKY  N +  V ++ G+ P+  +   L+ + HG   ++IGTHAL QD +++  L 
Sbjct: 323 HYNECKKYFGN-KFNVRLLIGSTPKKEKEIILKELEHGLCKMVIGTHALIQDEVKFKNLG 381

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L I DEQHRFGV QR++LT+K ++P++L+MTATPIPRTL L   GD+DIS I + P GRK
Sbjct: 382 LAITDEQHRFGVIQRVELTKKGSSPNILVMTATPIPRTLSLVLYGDLDISIIDQLPPGRK 441

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514
            I T  +  +    V   +K  L EG++ YWICP IEE +  N +S VE   SL E F  
Sbjct: 442 KILTYAVDESFRQRVYNFIKKQLDEGRQVYWICPLIEESETLNAKSAVEFAKSLKEGFFK 501

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             ++  +HG++S  +++ +++ FK+G   +L++TTV+EVGI+V +A++++IENAE FGLA
Sbjct: 502 DYNVGCLHGKLSAKERDKILNDFKDGHIHILVSTTVVEVGINVPNATVMVIENAERFGLA 561

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRGE  S CI L++   S+ +  R+  +  +++GF IAE DLK R  G++ 
Sbjct: 562 QLHQLRGRVGRGEHQSYCI-LFNQSDSEIAKKRMIAITRSQNGFEIAEMDLKLRGPGDLF 620

Query: 635 GIKQSGMPKFLIA 647
           G KQ G+  F +A
Sbjct: 621 GTKQHGIMNFKVA 633


>gi|15674226|ref|NP_268401.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12725313|gb|AAK06342.1|AE006453_6 ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 666

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 242/644 (37%), Positives = 366/644 (56%), Gaps = 28/644 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100
           DLL Y P  + D   R  + E+ +    TI G +   ++ Q    KR      + +G   
Sbjct: 31  DLLLYFPFRYEDFASR-SVFELVDGEKATIIGTVVTPANVQYYGFKRNRLSFKIKEGEAV 89

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           + + FF +    L +    G++I V GK ++ K +++ +    +     D     +E VY
Sbjct: 90  VAVSFFNQP--YLADKVEVGKEIAVYGKWEQAKQQLMGMK---VVAQVDDG----LEPVY 140

Query: 161 SLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
            L  G+      K+I +      L  LPE + + L++K    +  EA   +H P   +D 
Sbjct: 141 HLAAGMKQSQLVKVIHQVFESDLLSELPENLPEFLIKKYRLMNRQEAVLAMHFP---EDM 197

Query: 219 EWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKS 276
           E    A  R+ ++EL   Q+ L  L  K+     G+ +  E G+I QKI   +PF  T +
Sbjct: 198 EAHKQALRRVKFEELFMFQLKLQALKNKEKSGRAGLEVVFEQGEIDQKI-SELPFELTGA 256

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q SA+ +IL DM     M R+LQGDVGSGKT+VA +AM AA  A  QA IM P  ILA+Q
Sbjct: 257 QLSALSEILTDMKSPYHMNRLLQGDVGSGKTVVASLAMYAACLANFQAAIMVPTEILARQ 316

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+  +K      QI   ++   +  A RR+ L  +  G  H+++GTHAL Q+ + +Y L 
Sbjct: 317 HFANLKALFPELQI--SLLVSGLKVAERREILADLVSGHTHMVVGTHALIQEGVNFYNLG 374

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV QR  L +K   P VL+MTATPIPRTL +T+ GD+D+S I E P GR+
Sbjct: 375 LVITDEQHRFGVNQRKILREKGQNPDVLMMTATPIPRTLAITAFGDMDVSIIDELPKGRQ 434

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           PI T  +   +  EV+  +K  +++  + Y+I P IEE +  + ++    F  L+E+F  
Sbjct: 435 PITTRWVKHEQFSEVLSWIKAEVAKDSQVYFISPLIEESETLDLKNAEALFAELNEYFGL 494

Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I ++HG+M + +K+ +M  FK     +L++TTVIEVG+DV +A+I++I +A+ FGL+
Sbjct: 495 FAKIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVIMDADRFGLS 554

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG + S  IL+ +P  S +   R+ ++  T++GF++AEEDLK R  GEI 
Sbjct: 555 QLHQLRGRVGRGTKKSYAILVANPK-SDSGKQRMKIMTETQNGFILAEEDLKMRGSGEIF 613

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD---PDLTS 675
           G++QSG+P+F+ A      ++LE+ARK+A  I       PDL +
Sbjct: 614 GLRQSGLPEFIAADLVNDYNILEVARKEAVEIFKNADEFPDLIA 657


>gi|150390531|ref|YP_001320580.1| ATP-dependent DNA helicase RecG [Alkaliphilus metalliredigens QYMF]
 gi|149950393|gb|ABR48921.1| ATP-dependent DNA helicase RecG [Alkaliphilus metalliredigens QYMF]
          Length = 686

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 241/662 (36%), Positives = 382/662 (57%), Gaps = 25/662 (3%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           +GVG K +  L ++      N     ++L++ P  + DR    K+S +     VTI G I
Sbjct: 13  KGVGPKKAARLKRL------NIETVQEMLYHFPRDYDDRRNTKKVSHLVAGEKVTIYGRI 66

Query: 77  SQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            +    Q+ K R      K+ + D TG ++++FF +    LK     G ++ V GK+K  
Sbjct: 67  IEEP--QISKIRKGLSLTKVKMRDDTGSVSVIFFNQP--FLKKNLTMGTEVMVNGKVKVG 122

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192
              + + +P Y    S +    +I  +YS   GL+     ++  + LS +   PE++ ++
Sbjct: 123 YKGLEITNPVYERVESANSEAQVI-PIYSTTEGLTQKEIYRMQKQLLSTIKEFPEFLPEE 181

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEI 251
           +++K     +  A   IH P+  +D +    A+ RL +DE     ++LL + ++  K++ 
Sbjct: 182 IIKKNRLCDLRFALCGIHFPKTTQDLKV---AKYRLVFDEFFLLNLSLLSIKKQFKKQKS 238

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            I ++++  + +  ++ +PF  T +Q   + +I  D+ +   M R++QGDVGSGKT+VA+
Sbjct: 239 SIALHIKDDVYE-FIQGLPFRLTSAQRKTLDEIFDDIQRTTPMNRLVQGDVGSGKTIVAV 297

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A+   V  G Q  +MAP  ILA+QHYE +K+      I V ++ G+M + ++ + LERI
Sbjct: 298 CALLNCVLNGYQGAMMAPTEILAEQHYEALKELLSPLNIEVGLLVGSMTKKNKERLLERI 357

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A G+  I+ GTHAL Q+ + ++ L L + DEQHRFGV+QR  L  K   PH+L+MTATPI
Sbjct: 358 AKGEVQIVTGTHALIQEGVVFHNLALAVTDEQHRFGVRQRASLMNKGANPHILVMTATPI 417

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL L   GD+DIS I E P GRK IKT      + ++V   +K  L  G++AY +CP 
Sbjct: 418 PRTLALIVYGDLDISTIDELPPGRKSIKTFSASKKKREDVYTFIKKELDNGRQAYVVCPL 477

Query: 492 IEEKKESNFRSVVERFNSLHEH--FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +EE +     S  E   +L  H  F S  + ++HG+M   +KE+VM++FK     +L++T
Sbjct: 478 VEESESIEAESATE-IATLFSHTIFKSYRVGLLHGKMPSKEKETVMNAFKRKEIDILVST 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG+  S CIL+ H   S  +  R+
Sbjct: 537 TVIEVGVNVPNATVMIIENAERFGLAQLHQLRGRVGRGDSQSYCILI-HNSKSDIAKERM 595

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            +++ T DGFLI+E+DL+ R  GE  GI+Q G+P+  IA    H  +L+I ++  K ++ 
Sbjct: 596 KIMEKTTDGFLISEKDLELRGPGEFFGIRQHGLPELKIANLFKHIKILKIVQQQIKELIE 655

Query: 669 QD 670
            D
Sbjct: 656 VD 657


>gi|327458866|gb|EGF05214.1| DNA helicase RecG [Streptococcus sanguinis SK1057]
          Length = 671

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 237/665 (35%), Positives = 380/665 (57%), Gaps = 29/665 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   L+   GVG K +   +K+       ET   DLL Y P  + D   +  + ++ +  
Sbjct: 3   LHQSLTVLPGVGPKSAEKFAKL-----GLET-LQDLLLYFPFRYEDFKSK-NVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I + GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAIFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVEALSRLPV 184
             K K  +  +    +    +D     ++ VY L  G+S    V L K    + L  L  
Sbjct: 116 WDKAKASLTGMK---LLTQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLL-- 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL++    S  EA   +H P+   D++    A  R+ ++EL   Q+ L +++
Sbjct: 167 LEENLPQPLLERYQLVSRVEAVRAMHFPKDLADYK---QALRRVKFEELFYFQMRLQVLK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ K    G+ I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVG
Sbjct: 224 RETKAVSNGLKIDWQLDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A 
Sbjct: 284 SGKTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELNLALLTGGMKAAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  I +GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P V
Sbjct: 342 RRETLAAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ LK  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G 
Sbjct: 462 QVYFISPLIEESEALDLKNAIALEEELTAYFGQQAKVALLHGKMKSEEKEAIMQDFKEGQ 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 TDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++   R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 ESGKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHI 666
            A  I
Sbjct: 641 VASQI 645


>gi|222529215|ref|YP_002573097.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456062|gb|ACM60324.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor bescii DSM
           6725]
          Length = 679

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/614 (37%), Positives = 368/614 (59%), Gaps = 21/614 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101
           DLL++ P  ++D     KI E+ +  I +    ++ +    + +  +  KI + D TG +
Sbjct: 32  DLLWHIPRKYLDYSRLKKIRELCDGEIESFVAKVAGKPVEIETRSVKIIKIPVEDSTGVV 91

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
           T ++F +  + +KNV  EG     +GKI++    I + +P +  ++   ++   I  VY+
Sbjct: 92  TTVWFNQ--DYIKNVLKEGEVFCFSGKIERKGFYIEVKNPEFEKYDQHLIHTGRIVPVYN 149

Query: 162 LPTGLSVDLFKKIIVEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
              GLS  + + I+   L +     + ++P +I     QK +   I  A   IH P    
Sbjct: 150 STEGLSQKVIRNIVNNLLQQVDGMLIDIIPPYIR----QKYNLSEINFAIKNIHFPENKL 205

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTK 275
             E    AR+RL ++E    Q++LLL+++  +K  GI I NV+  + ++  + +PF  T+
Sbjct: 206 SLEL---ARKRLVFEEFYLLQLSLLLLKENIEKNEGIKIENVQSSL-KEFEKLLPFELTE 261

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q+  + +I QD+    +M R++QGDVG GKT+VAL +  A ++AG Q  +MAP  +LA 
Sbjct: 262 AQKRVLAEIAQDLESTKQMNRLIQGDVGCGKTVVALASAYATIKAGYQVALMAPTEVLAL 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY   KKY  N +  V ++ G+ P+  +   L+ + HG   ++IGTHAL QD +++  L
Sbjct: 322 QHYNECKKYFDN-KFNVRLLIGSTPKKEKEIILKELEHGLCKMVIGTHALIQDDVKFKNL 380

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L I DEQHRFGV QR++LT+K ++P++L+MTATPIPRTL L   GD+DIS I + P GR
Sbjct: 381 GLAITDEQHRFGVIQRVELTKKGSSPNILVMTATPIPRTLSLVLYGDLDISIIDQLPPGR 440

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF- 514
           K I T  +  +    V   +K  L+EG++ YWICP IEE +  N +S VE   SL E F 
Sbjct: 441 KKILTYAVDESFRQRVYNFIKKQLNEGRQVYWICPLIEESETLNAKSAVEFAKSLKEGFF 500

Query: 515 -TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              ++A +HG++S  +++ +++ FK+G   +L++TTV+EVGI+V +A++++IENAE FGL
Sbjct: 501 KDYNVACLHGKLSVKERDKILNDFKDGHIHILVSTTVVEVGINVPNATVMVIENAERFGL 560

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           AQLHQLRGRVGRGE  S CI L++   S+ +  R+  +  +++GF IAE DLK R  G++
Sbjct: 561 AQLHQLRGRVGRGEYQSYCI-LFNQSDSEIAKKRMIAITRSQNGFEIAEMDLKLRGPGDL 619

Query: 634 LGIKQSGMPKFLIA 647
            G KQ G+  F +A
Sbjct: 620 FGTKQHGIMNFKVA 633


>gi|326407876|gb|ADZ64947.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis
           CV56]
          Length = 666

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 242/644 (37%), Positives = 367/644 (56%), Gaps = 28/644 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100
           DLL Y P  + D   R  + E+ +    TI G +   ++ Q    KR      + +G   
Sbjct: 31  DLLLYFPFRYEDFASR-SVFELVDGEKATIIGTVVTPANVQYYGFKRNRLSFKIKEGEAV 89

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           + + FF +    L +    G++I V GK ++ K +++ +    +     D     +E VY
Sbjct: 90  VAVSFFNQP--YLADKVEVGKEIAVYGKWEQAKQQLMGMK---VVAQVDDG----LEPVY 140

Query: 161 SLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
            L  G+      K+I +      L  LPE + + L++K    +  EA   +H P   +D 
Sbjct: 141 HLTAGMKQSQLVKVIHQVFESDLLSELPENLPEFLIKKYRLMNRQEAVLAMHFP---EDM 197

Query: 219 EWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKS 276
           E    A  R+ ++EL   Q+ L  L  K+     G+ +  E G+I QKI   +PF  T +
Sbjct: 198 EAHKQALRRVKFEELFMFQLKLQALKNKEKSGRAGLEVVFEQGEIDQKI-SELPFELTGA 256

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q SA+ +IL DM     M R+LQGDVGSGKT+VA +AM AA  A  QA IM P  ILA+Q
Sbjct: 257 QLSALSEILTDMKSPYHMNRLLQGDVGSGKTVVASLAMYAACLANFQAAIMVPTEILARQ 316

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+  +K      QI   ++   +  A RR+ L  +  G  H+++GTHAL Q+ + +Y L 
Sbjct: 317 HFANLKALFPELQI--SLLVSGLKVAERREILADLVSGHTHMVVGTHALIQEGVDFYNLG 374

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV QR  L +K   P VL+MTATPIPRTL +T+ GD+D+S I E P GR+
Sbjct: 375 LVITDEQHRFGVNQRKILREKGQNPDVLMMTATPIPRTLAITAFGDMDVSIIDELPKGRQ 434

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           PI T  +   +  EV+  +K  +++  + Y+I P IEE +  + ++    F  L+E+F  
Sbjct: 435 PITTRWVKHEQFSEVLSWIKAEVAKDSQVYFISPLIEESETLDLKNAEALFAELNEYFGL 494

Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I ++HG+M + +K+ +M  FK     +L++TTVIEVG+DV +A+I++I +A+ FGL+
Sbjct: 495 FAKIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVIMDADRFGLS 554

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG + S  IL+ +P  S +   R+ ++  T++GF++AEEDLK R  GEI 
Sbjct: 555 QLHQLRGRVGRGTKKSYAILVANPK-SDSGKQRMKIMTETQNGFILAEEDLKMRGSGEIF 613

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL---TQDPDLTS 675
           G++QSG+P+F+ A      ++LE+ARK+A  I     + PDL +
Sbjct: 614 GLRQSGLPEFIAADLVNDYNILEVARKEAVEIFKNADEFPDLIA 657


>gi|15642978|ref|NP_228020.1| ATP-dependent DNA helicase RecG [Thermotoga maritima MSB8]
 gi|16975404|pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
 gi|4980702|gb|AAD35297.1|AE001705_8 ATP-dependent DNA helicase [Thermotoga maritima MSB8]
          Length = 780

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 235/635 (37%), Positives = 356/635 (56%), Gaps = 23/635 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL + P  + DR    K++++     VT  G I    + + Q       +L+DG   + 
Sbjct: 141 DLLEFFPRDYEDRRKIFKLNDLLPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVP 200

Query: 103 LLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-----NFP 154
           L +F   Y +T + +     G+++ VTG +K            Y  HN++          
Sbjct: 201 LKWFNQDYLQTYLKQ---LTGKEVFVTGTVKS-----NAYTGQYEIHNAEVTPKEGEYVR 252

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
            I  +Y L +G+S    +KI  E +  L   L E + + +L+K+    + +A+  +H P 
Sbjct: 253 RILPIYRLTSGISQKQMRKIFEENIPSLCCSLKETLPERILEKRKLLGVKDAYYGMHFP- 311

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
             K F     ARERLAY+EL   Q+A   +RK+ +K  GIP  +EGK+A++ ++++PF  
Sbjct: 312 --KTFYHLEKARERLAYEELFVLQLAFQKIRKEREKHGGIPKKIEGKLAEEFIKSLPFKL 369

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q+ A ++I  DM  +  M R+LQGDVGSGKT+VA +A+    EAG Q   M P  IL
Sbjct: 370 TNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSIL 429

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A QHY    +      I V ++ G    + + K    + +GQ  ++IGTHAL Q+ + + 
Sbjct: 430 AIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFK 489

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L LVI+DEQHRFGV+QR  L  K      L+M+ATPIPR++ L   GD+D++ I E P 
Sbjct: 490 NLGLVIIDEQHRFGVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPP 549

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GRK ++T+++P++R++EV E ++  +  G +A+ + P IEE  + N +S VE +  L + 
Sbjct: 550 GRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE 609

Query: 514 FTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 + ++HGR+S  +K+ VM  F  G   +L++TTVIEVGIDV  A++++IEN E F
Sbjct: 610 VFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERF 669

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GLAQLHQLRGRVGRG + + C L+    + + +  RL       DGF IAE DLK R  G
Sbjct: 670 GLAQLHQLRGRVGRGGQEAYCFLVVG-DVGEEAMERLRFFTLNTDGFKIAEYDLKTRGPG 728

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           E  G+KQ G+  F +A       LLE AR+D + I
Sbjct: 729 EFFGVKQHGLSGFKVADLYRDLKLLEWAREDVQEI 763


>gi|89098692|ref|ZP_01171574.1| ATP-dependent DNA helicase RecG [Bacillus sp. NRRL B-14911]
 gi|89086654|gb|EAR65773.1| ATP-dependent DNA helicase RecG [Bacillus sp. NRRL B-14911]
          Length = 679

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 237/668 (35%), Positives = 381/668 (57%), Gaps = 29/668 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLS--KIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEIS 65
           L  P+++ +G+G + +  L+   I   G        DLL + P  + D  YR K +SE+ 
Sbjct: 2   LNEPVTSIKGIGAETAEALADMNIFTVG--------DLLEHFPFRYED--YRLKDLSEVK 51

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
            E  VT+ G I          R+  ++ +    G   +   +     LK  F     +T+
Sbjct: 52  HEERVTVEGKIHSEPLLTYYGRKRSRLTIRVLVGRYLIQAVFFNQPYLKKKFAINDSVTI 111

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-V 184
           TGK  + +  I     H +  N+   +F   E VY++   ++V   ++ I  A S+    
Sbjct: 112 TGKWDQHRQMISASEIH-LGENAASKDF---EPVYAVKGSITVKGIRRFIGMAFSQYADS 167

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E + + LL++    +  +A   +H P   +D +    AR R  Y+E L  Q+ +  +R
Sbjct: 168 IAETLPERLLEQYKLLNRKDALRAMHFPGGPEDLK---QARRRFVYEEFLYFQLKMQALR 224

Query: 245 KQFKKE--IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           K F++E   GI    + K  ++ + ++PF  T +Q+  + +IL DM    RM R+LQGDV
Sbjct: 225 K-FEREQSKGIVQTYDLKKLKEFIGSLPFPLTGAQKRVVNEILSDMKSPYRMNRLLQGDV 283

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA I + AA  AG Q  +M P  ILA+QH + +K+  +   +  E++T ++   
Sbjct: 284 GSGKTVVAAIGLYAAATAGYQGALMVPTEILAEQHEKSLKELLEPQGLSCELLTSSVKGK 343

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R+  L R++ G+  ++IGTHAL Q  +++ +L  VI DEQHRFGV+QR  L +K  +P 
Sbjct: 344 KRKDILARLSEGEIDVLIGTHALIQQEVEFKRLGFVITDEQHRFGVEQRRVLREKGESPD 403

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL +T  G++D+S I E PAGRK I+T       +D +++ ++  LS+G
Sbjct: 404 VLFMTATPIPRTLAITVFGEMDVSIIDEMPAGRKTIETYWAKQEMLDRILQFMEKELSKG 463

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNG 540
           ++AY ICP IEE  + + ++ ++  ++L  ++     + ++HGR+   +K+ VM  F   
Sbjct: 464 RQAYVICPLIEESDKLDVQNAIDVHSNLTFYYQDRYKVGLMHGRLHPEEKDGVMKEFSRN 523

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L++TTV+EVG++V +A+I++I +AE FGL+QLHQLRGRVGRG E S CILL  P  
Sbjct: 524 EIQILVSTTVVEVGVNVPNATIMVIYDAERFGLSQLHQLRGRVGRGSEQSYCILLADPK- 582

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIA 659
           S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSGMP+F +A   +HD   LE A
Sbjct: 583 SEVGKERMKIMSETNDGFVLSEKDLELRGPGDFFGRKQSGMPEFKVADM-VHDYRALETA 641

Query: 660 RKDAKHIL 667
           R DA  ++
Sbjct: 642 RNDASKLI 649


>gi|322388803|ref|ZP_08062400.1| DNA helicase RecG [Streptococcus infantis ATCC 700779]
 gi|321140422|gb|EFX35930.1| DNA helicase RecG [Streptococcus infantis ATCC 700779]
          Length = 671

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 243/674 (36%), Positives = 380/674 (56%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHRPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGVSQAGLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E I + LL K      ++A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENIPQSLLDKYKLMPRSQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K    G+ +N   +    +   +PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NKVHGSGLVLNWSQEKLTAVKEKLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT VA +AM AAV AG QA +M P  ILA+QH+E ++    + ++   ++TG++  A +R
Sbjct: 286 KTAVAGLAMYAAVTAGYQAALMVPTEILAEQHFESLESLFPDLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 RVLETIAKGEADVIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGENPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAKVALLHGKMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G KQSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTKQSGLPEFHVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSLPNWREDPE 656


>gi|258514450|ref|YP_003190672.1| ATP-dependent DNA helicase RecG [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778155|gb|ACV62049.1| ATP-dependent DNA helicase RecG [Desulfotomaculum acetoxidans DSM
           771]
          Length = 692

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/638 (36%), Positives = 367/638 (57%), Gaps = 13/638 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL-QKRRPYKILLNDGTGEI 101
           D+L+Y P  + +R     ++E S++  V++ G +      +L Q     K+ L+DG    
Sbjct: 35  DMLYYFPRRYEERKLIEFVNECSQDDTVSVRGTVLGSQDLKLRQGLTATKVALSDGMNIF 94

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--DVNFPLIEAV 159
             ++F +    +K     G  ITVTGK+ +    + +    +  +NS   +  +  I  V
Sbjct: 95  YAVWFNQPH--IKKQIAPGLTITVTGKVDQRYGAVQIRVADFELNNSSVAENYWCSIVPV 152

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           Y+L   ++    + +I   L        E+I ++L++K     +  +   +H P+   + 
Sbjct: 153 YALSEKINQKFLRGLIKTCLEEYTSEQEEFIPENLIKKYRLLPLNRSLLWMHQPQNILE- 211

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI-PINVEGKIAQKILRNIPFSPTKSQ 277
             T  AR RL ++EL   Q+ L   ++   +++     + + +I +K L N+ F  T +Q
Sbjct: 212 --TEKARRRLIFEELFLLQLLLAARKRTITRKLKFFTYSDKNEILKKFLNNLSFGLTPAQ 269

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
               ++I+ DM +   M R+LQGDVGSGKT+++ +A+  A E G Q  +M P  ILA+QH
Sbjct: 270 SRVWQEIMTDMHRSVPMYRLLQGDVGSGKTVISTLALLKAAENGLQGALMVPTEILAEQH 329

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y F+K+Y +   I V ++TG M +A +  A + I  GQ  I+IGTHAL Q++I +  L +
Sbjct: 330 YLFLKRYMEPLGINVGLLTGKMKKAEKNMAFQLIESGQMQIVIGTHALIQENIAFKHLAM 389

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            ++DEQHRFGV+QR  L  K   P +L+MTATPIPRTL +T  GD+DIS I + P GRKP
Sbjct: 390 AVIDEQHRFGVRQRATLQDKGICPDMLVMTATPIPRTLAMTLYGDLDISVIDQLPPGRKP 449

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           IKT +I  N++ +  E ++  +  G++AY ICP +EE +    ++ ++    L E   + 
Sbjct: 450 IKTHVIYENKLPDTYEFMRKQIRIGRQAYIICPLVEESEHVESQAAIDLALELSEGELAD 509

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            S+ ++HGRM    KE VM  F+ G    L+ TTVIEVG+DV +A++++I +A+ FGLAQ
Sbjct: 510 FSVGLLHGRMKSELKEEVMTKFRLGEIDALVTTTVIEVGVDVPNATVMVILDADRFGLAQ 569

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG E S CIL+ +P  +  +  RL+ +  +EDGF +AE+DL+ R  GE  G
Sbjct: 570 LHQLRGRVGRGLEQSYCILVANPK-TDEARARLAAMHRSEDGFYLAEQDLRIRGPGEFCG 628

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            +QSG+P   +A       +LE+AR++A  +L  DP+L
Sbjct: 629 TRQSGLPDLKVADLIRDWKILEVARQEAIDLLASDPEL 666


>gi|317121767|ref|YP_004101770.1| ATP-dependent DNA helicase RecG [Thermaerobacter marianensis DSM
           12885]
 gi|315591747|gb|ADU51043.1| ATP-dependent DNA helicase RecG [Thermaerobacter marianensis DSM
           12885]
          Length = 924

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 246/710 (34%), Positives = 378/710 (53%), Gaps = 27/710 (3%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P+ L P   PLS   GVG++ +  L+++     A      DLL++ P  + DR     I+
Sbjct: 226 PAALTPA-TPLSRLPGVGRRQAQRLARL-GLHTAG-----DLLWHLPRRYEDRSTWKPIA 278

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            +    + T+ G +        +  R   +I ++DG+G +  +FF +   + + V   GR
Sbjct: 279 RLVPGEVATVQGVVVDAQRVPTRTGRTVVRITVSDGSGRLDAVFFNQPFRLQQLV--PGR 336

Query: 122 KITVTGKIKKLKNRIIMVHPHYI---FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            + ++G++        M HP          + V+   I  VY    GL     +++  + 
Sbjct: 337 TVLLSGRVDAGYRGWQMDHPEVEPVEGGEGEPVHTARIVPVYPATEGLHQRWLRQLAWQV 396

Query: 179 LSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           +  L   +PE +   L         + A   IH P    D      AR RLA++E    Q
Sbjct: 397 VGALAGQVPEILPAGLRAALGLVDRSTALRHIHFP---PDAAAWQAARRRLAFEEWFVMQ 453

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL  +R Q ++E G     +G    + L ++PF  T +Q   + +I  DM     M R+
Sbjct: 454 VALARVRSQQQQEPGRAHRPDGPRVARFLASLPFELTPAQRRVLDEIRADMEAPRPMRRL 513

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  AM  AVE+G QA +MAP  ILA+QH   ++       I V  + G
Sbjct: 514 VQGDVGSGKTVVAAWAMVKAVESGAQAALMAPTEILAEQHARRLQSLLAPAGIPVVQLVG 573

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++P A R + LE +A G+  +++GTHAL QD +++  L LVI+DEQHRFGV+QR  L  K
Sbjct: 574 SLPAADRERVLEGLASGRWPVVVGTHALIQDDVRFRDLSLVIIDEQHRFGVRQRALLQGK 633

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P +L+MTATPIPRTL LT  GD+D+S I + P GR+P++T+ +   +     + L  
Sbjct: 634 GQVPDLLVMTATPIPRTLALTLYGDLDVSVIDQLPPGRQPVRTLWLRGRQRRRAYDLLAA 693

Query: 478 VLSEGKKAYWICPQIEEK-------KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDID 529
            ++ G++ Y +CP ++E         ++  ++V      +   +    + I+HGRM   +
Sbjct: 694 RVAAGEQGYVVCPLVDEPAGGAGGAGDAEQKAVTTWAEFVARRYPRLRVGILHGRMPGAE 753

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE VM +F+     +L+ATTVIEVG+DV +A+++IIE A+ FGLAQLHQLRGRVGRG + 
Sbjct: 754 KERVMRAFERRALDVLVATTVIEVGVDVPNATVMIIEGADRFGLAQLHQLRGRVGRGSKE 813

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S CIL+  P  ++    RL  L  ++ GF IAE DL+ R  G+  G +Q G+P   IA P
Sbjct: 814 SLCILVADPATAEGRL-RLEALCRSQSGFEIAEFDLELRGPGDFFGTRQHGLPALRIADP 872

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
                LL  AR+ A+ +L +DP L +   Q++R  + L +Y E     RA
Sbjct: 873 IRDAGLLRQAREAARRLLEEDPQLAAPEHQALRWEV-LDRYGEFLAEARA 921


>gi|294500971|ref|YP_003564671.1| ATP-dependent DNA helicase RecG [Bacillus megaterium QM B1551]
 gi|294350908|gb|ADE71237.1| ATP-dependent DNA helicase RecG [Bacillus megaterium QM B1551]
          Length = 682

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 238/658 (36%), Positives = 371/658 (56%), Gaps = 35/658 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL----QKRRPYKILLNDGT 98
           DLL + P  + D   +  ++E   +  VT+ G +    S       + R  +++L+N   
Sbjct: 33  DLLEHFPYRYEDYELK-DLAEAKHDEKVTVEGKVHSVPSLTYYGKKRSRLTFRLLVNRYL 91

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP---- 154
             IT+  F R     K+     + +TVTGK  + +  I          N Q++ F     
Sbjct: 92  --ITVTCFNRP--YYKSKLEIDQTVTVTGKWDQHRQTI----------NLQELQFSPFVK 137

Query: 155 --LIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
              IE VYS+   L+V   +K +  AL      + + +   +  +    +  EA   IH 
Sbjct: 138 NQTIEPVYSVKGSLTVKGMRKFVSLALKNYGSSIQDMLPASIRSRYKLVTREEAVRSIHL 197

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIP 270
           PR  +D +    AR R  Y+E L  Q+ +  +RK+ ++E  G+    +          +P
Sbjct: 198 PRDHEDLK---QARRRFVYEEFLLFQLKMQALRKREREETPGMKQVFDSTELVNFTNLLP 254

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T +Q+  + +I  DM    RM R+LQGDVGSGKT+VA +A+ A V AG Q  +M P 
Sbjct: 255 FPLTNAQKRVVNEITHDMKSPYRMNRLLQGDVGSGKTVVAAVALYATVLAGHQGALMVPT 314

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA+QH E +    +   I V ++TG++    RR+ L+R+  G  H+++GTHAL QD +
Sbjct: 315 EILAEQHAESLTAMLEKVGISVGLLTGSVKGKARRELLQRVKDGDVHVLVGTHALIQDEV 374

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            Y  L LVI DEQHRFGV QR  L +K  +P VL MTATPIPRTL +T  G++D+S I E
Sbjct: 375 IYNSLGLVITDEQHRFGVGQRRVLREKGESPDVLFMTATPIPRTLAITVFGEMDVSIIDE 434

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            PAGRK I+T  +  + ++ ++  ++  + +G++AY ICP IEE  + + ++ ++   +L
Sbjct: 435 MPAGRKAIETYWVKHDMLERILHFVEKEIHDGRQAYVICPLIEESDKLDVQNAIDVHATL 494

Query: 511 HEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
             +F   +S+ ++HGR+S  +KE VM  F     ++L++TTV+EVG++V +A++++I +A
Sbjct: 495 THYFNGKASVGLMHGRLSPDEKEEVMKQFSVNDVQILVSTTVVEVGVNVPNATVMVIYDA 554

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E FGL+QLHQLRGRVGRG+  S CILL  P  S+    R++++  T DGF+++E DL+ R
Sbjct: 555 ERFGLSQLHQLRGRVGRGDAQSYCILLADPK-SEVGKERMTIMTETNDGFVLSERDLELR 613

Query: 629 KEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
             G+  G KQSGMP+F +A   +HD   LE+AR+DA  ++  D   T  +   +RI L
Sbjct: 614 GPGDFFGRKQSGMPEFKVADM-VHDYRALEVAREDAAKLVNSDSFWTEDQFALLRIQL 670


>gi|307705414|ref|ZP_07642271.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK597]
 gi|307621013|gb|EFO00093.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK597]
          Length = 671

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 240/663 (36%), Positives = 377/663 (56%), Gaps = 25/663 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKTSLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  N+PF+ T +QE ++ +IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKENLPFALTPAQEKSLLEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    + ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQSLFPDLKLA--LLTGSLKVAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRVLREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLIWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  +F   + +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAYFAGKAEVALLHGKMKSDEKDQIMQEFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMLIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHI 666
            +I
Sbjct: 643 SYI 645


>gi|329121239|ref|ZP_08249866.1| DNA helicase RecG [Dialister micraerophilus DSM 19965]
 gi|327470173|gb|EGF15636.1| DNA helicase RecG [Dialister micraerophilus DSM 19965]
          Length = 678

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/592 (35%), Positives = 346/592 (58%), Gaps = 10/592 (1%)

Query: 88  RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN 147
           R   ++L D    +TL +F +  +  K  F    +I   GK++ L  +  + +       
Sbjct: 77  RLLSVILTDNINSVTLTYFNQSWK--KKQFNINEEILAYGKVEYLYGKYQISNAEIEAVP 134

Query: 148 SQDV-NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
            +++ NF  +  +Y L  G++    + +I  AL  +  L E +  ++L +++FP    A 
Sbjct: 135 KENLKNFEKLVPIYPLTEGITATQMRSMIAFALKNVSNLKENLPIEILTRENFPDKLLAV 194

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKI 265
            ++HNP+  K+ E    AR+RLA++EL   Q  +L+++++ K    GI  +  GK+ + +
Sbjct: 195 KMLHNPKNYKEKE---TARKRLAFEELFFMQAGILMLKEKRKINSYGIKCSPSGKLVKSV 251

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L   PF  TK Q+ A  DI  DM     M R+LQGDVGSGKT +A +  A  VE G QA 
Sbjct: 252 LNKFPFELTKDQKKAFSDIENDMEDIEPMYRLLQGDVGSGKTAIAALTAAKIVENGYQAT 311

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  +LA QHY+      +N  + +  ++GN+  + R   L ++  G+  I+IGTHAL
Sbjct: 312 LMAPTEVLASQHYKTFLNLYKNLSVEIAYLSGNIKNSEREVLLNKLKSGEIDILIGTHAL 371

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            ++++++  L LVI DEQHRFGV+QR  L  K   PHVL+MTATPIPRT+ L+  GD+D 
Sbjct: 372 IENNVKFAHLGLVITDEQHRFGVKQRELLETKGENPHVLVMTATPIPRTMALSVYGDLDA 431

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I + P GRKP+KT +I    +  V+  +K  + +G +AY +CP +EE ++++  + + 
Sbjct: 432 SVINQMPIGRKPVKTYVINDKLLQRVLIFIKKEIQKGHQAYIVCPLVEESEKTDLAAAIS 491

Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            ++ L ++  S     +I+G+M + +KE +M+ F     ++L+AT+VIEVG++V +A+++
Sbjct: 492 VYDKLRKNIFSEYKCGLIYGKMKNSEKEQIMNDFCENKLQILVATSVIEVGVNVPNATVM 551

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           ++  AE FGL+QLHQLRGRVGRG+  S CI LY    ++ +  RL+++    +GFL++E+
Sbjct: 552 LVYGAERFGLSQLHQLRGRVGRGKIQSYCI-LYTKNTNETTTLRLNIMTKINNGFLLSEK 610

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           DL  R  GE+ G  Q GMP   +A       LLE AR  A+  +  + ++ S
Sbjct: 611 DLMLRGSGELFGYHQHGMPDLKVANIIKDLPLLEKARNYAQKFIHSEKNIKS 662


>gi|284802257|ref|YP_003414122.1| hypothetical protein LM5578_2013 [Listeria monocytogenes 08-5578]
 gi|284995399|ref|YP_003417167.1| hypothetical protein LM5923_1964 [Listeria monocytogenes 08-5923]
 gi|284057819|gb|ADB68760.1| hypothetical protein LM5578_2013 [Listeria monocytogenes 08-5578]
 gi|284060866|gb|ADB71805.1| hypothetical protein LM5923_1964 [Listeria monocytogenes 08-5923]
          Length = 697

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 242/680 (35%), Positives = 386/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 23  PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 75

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 76  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 134

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWI 189
           K + ++           S++     +E VY L   L     +K    A  S    + E I
Sbjct: 135 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEVI 190

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248
             +LL+K       EA  I+H P   K+ E    AR R+ Y+E L  Q+ +   RK + +
Sbjct: 191 PGNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIERE 247

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT+
Sbjct: 248 KSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTV 307

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ L
Sbjct: 308 VASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELL 367

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 368 AMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMTA 427

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y I
Sbjct: 428 TPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYII 487

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L+
Sbjct: 488 CPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCLV 547

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++    
Sbjct: 548 STTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGVDQSYCILIADPK-TEVGKE 606

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665
           R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+DA H
Sbjct: 607 RMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAVH 665

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 666 MIFEEDMLENKNYEKLVALL 685


>gi|322377446|ref|ZP_08051937.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M334]
 gi|321281646|gb|EFX58655.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M334]
          Length = 671

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 239/663 (36%), Positives = 377/663 (56%), Gaps = 25/663 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T +QE ++++IL DM     M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKASLPFALTPAQEKSLQEILTDMKSDYHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    + ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQGLFPDLKLA--LLTGSLKVAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G++ +IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGESDLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRVLREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAKVALLHGKMKSDEKDQIMQDFKERKTN 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFILAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHI 666
            +I
Sbjct: 643 SYI 645


>gi|16803851|ref|NP_465336.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes EGD-e]
 gi|224501387|ref|ZP_03669694.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL R2-561]
 gi|16411265|emb|CAC99889.1| lmo1811 [Listeria monocytogenes EGD-e]
          Length = 682

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 242/680 (35%), Positives = 386/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWI 189
           K + ++           S++     +E VY L   L     +K    A  S    + E I
Sbjct: 120 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEVI 175

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248
             +LL+K       EA  I+H P   K+ E    AR R+ Y+E L  Q+ +   RK + +
Sbjct: 176 PGNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIERE 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT+
Sbjct: 233 KSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTV 292

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ L
Sbjct: 293 VASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELL 352

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 353 AMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMTA 412

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y I
Sbjct: 413 TPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYII 472

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L+
Sbjct: 473 CPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCLV 532

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++    
Sbjct: 533 STTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGVDQSYCILIADPK-TEVGKE 591

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665
           R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+DA H
Sbjct: 592 RMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 651 MIFEEDMLENKNYEKLVALL 670


>gi|69249786|ref|ZP_00605048.1| ATP-dependent DNA helicase RecG [Enterococcus faecium DO]
 gi|257878761|ref|ZP_05658414.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,230,933]
 gi|257881402|ref|ZP_05661055.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,502]
 gi|257890619|ref|ZP_05670272.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,410]
 gi|258615172|ref|ZP_05712942.1| ATP-dependent DNA helicase RecG [Enterococcus faecium DO]
 gi|293562982|ref|ZP_06677449.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1162]
 gi|294622007|ref|ZP_06701151.1| ATP-dependent DNA helicase RecG [Enterococcus faecium U0317]
 gi|314937645|ref|ZP_07844971.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133a04]
 gi|314942856|ref|ZP_07849669.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133C]
 gi|314948008|ref|ZP_07851412.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0082]
 gi|314950926|ref|ZP_07853995.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133A]
 gi|314991426|ref|ZP_07856903.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133B]
 gi|314995053|ref|ZP_07860173.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133a01]
 gi|68194075|gb|EAN08620.1| ATP-dependent DNA helicase RecG [Enterococcus faecium DO]
 gi|257812989|gb|EEV41747.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,230,933]
 gi|257817060|gb|EEV44388.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,502]
 gi|257826979|gb|EEV53605.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,410]
 gi|291598434|gb|EFF29507.1| ATP-dependent DNA helicase RecG [Enterococcus faecium U0317]
 gi|291605108|gb|EFF34575.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1162]
 gi|313590779|gb|EFR69624.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133a01]
 gi|313593906|gb|EFR72751.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133B]
 gi|313596935|gb|EFR75780.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133A]
 gi|313598328|gb|EFR77173.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133C]
 gi|313643022|gb|EFS07602.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133a04]
 gi|313645606|gb|EFS10186.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0082]
          Length = 678

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 235/665 (35%), Positives = 379/665 (56%), Gaps = 27/665 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           ++  VT+ G +      + F  +K R  ++++       ++  FF +    LK       
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILSE 109

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +I V GK      R  +     +   + D   P+     S+     VDL KK   E  + 
Sbjct: 110 EIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT- 166

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
             ++ E +  +L++K      A A   +H P   KD E    A+ R+ ++E    Q+ L 
Sbjct: 167 --LIEENLPNNLVEKYRLLDRASAVRSMHFP---KDHEENHQAKRRVVFEEFFLFQMRLQ 221

Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++K  K E  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQG
Sbjct: 222 GLKKAEKAETNGLEILYDVQKLKQFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQG 281

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ + +ITG+  
Sbjct: 282 DVGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTIALITGSTK 341

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+ LE++  G+ +++IGTHAL QD +++  L LVI DEQHRFGV QR  L +K   
Sbjct: 342 AKERRELLEKLEQGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWR 401

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  K  L+
Sbjct: 402 PDVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTKKELA 461

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538
            G + Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK
Sbjct: 462 RGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFK 521

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +   ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P
Sbjct: 522 DNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANP 581

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F IA      ++LE+
Sbjct: 582 K-NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEV 640

Query: 659 ARKDA 663
           AR++A
Sbjct: 641 AREEA 645


>gi|289826478|ref|ZP_06545590.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 566

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/545 (40%), Positives = 324/545 (59%), Gaps = 20/545 (3%)

Query: 138 MVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VLPEWIEK 191
           M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    + E +  
Sbjct: 1   MIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAIAELLPP 58

Query: 192 DLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLLMRKQF 247
           +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L +R   
Sbjct: 59  ELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSMLALRAGA 116

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++    P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++QGDVGSGKT
Sbjct: 117 QRYHTQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGDVGSGKT 176

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           LVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G      R+  
Sbjct: 177 LVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKGKARQAQ 236

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHV 423
            E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K       PH 
Sbjct: 237 QEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQ 296

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEG 482
           L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++    +EG
Sbjct: 297 LIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRNACTTEG 356

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM +FK G 
Sbjct: 357 RQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGE 416

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY  PLS
Sbjct: 417 LHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKSPLS 476

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           K +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      +++   ++
Sbjct: 477 KTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQR 536

Query: 662 DAKHI 666
            A+HI
Sbjct: 537 IARHI 541


>gi|239826579|ref|YP_002949203.1| ATP-dependent DNA helicase RecG [Geobacillus sp. WCH70]
 gi|239806872|gb|ACS23937.1| ATP-dependent DNA helicase RecG [Geobacillus sp. WCH70]
          Length = 682

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 238/664 (35%), Positives = 382/664 (57%), Gaps = 27/664 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYH-PSSFIDRHYRPKISEISEERIV 70
           P++  +G+G++ S  L ++           I+ LF H P  + D   +  ++E+  +  V
Sbjct: 8   PVTAIKGIGEETSEALREM-------GITTIEELFMHIPYRYEDYEIK-DLAEVKHDEKV 59

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           T+ G +    S     ++  ++      G   IT++ F R    LK        +TV GK
Sbjct: 60  TVEGKVHSEPSLTYYAKKKSRLTFRLLVGRYLITVVCFNRP--YLKGKLSINDTVTVIGK 117

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPE 187
             + +  I      Y            IE VYS+   ++V   ++ I  AL++    + +
Sbjct: 118 WDQHRQMITA----YELKLGPLPQKREIEPVYSVRGSITVKGMRRFIKLALTQYGEAIVD 173

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-Q 246
            +   + Q     S  EA   IH PR  ++ +    AR RL Y+E L  Q+ +  +RK Q
Sbjct: 174 PLPLSIRQTYRLISKQEAIRAIHFPRSHEELK---QARRRLVYEEFLLFQLKIHALRKVQ 230

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            +   GI  +   +     ++ +PFS TK+Q+  + +IL DM    RM R+LQGDVGSGK
Sbjct: 231 REYSEGIAHSFSEEKLHAFIQQLPFSLTKAQQRVVHEILADMRSPYRMNRLLQGDVGSGK 290

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA I + AAV +G Q  +M P  ILA+QH + ++    +T + V ++T ++    R++
Sbjct: 291 TVVAAIVLYAAVLSGYQGALMVPTEILAEQHAQSLQTLFASTNVAVALLTSSVKGKKRKE 350

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE++A G   IIIGTHAL Q+ + + KL LVI DEQHRFGV+QR  L +K  +P VL+M
Sbjct: 351 ILEQLACGDIDIIIGTHALIQEEVNFKKLGLVITDEQHRFGVEQRRILREKGQSPDVLMM 410

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL +T+ G++D+S I E PAGRK ++T  +  +  + V++ ++  + +G++AY
Sbjct: 411 TATPIPRTLAITAFGEMDVSVIDEMPAGRKKVQTYWVKHHMFERVLDFIEKEIQKGRQAY 470

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP IEE ++ + ++ ++  + L  ++     I ++HGR+S  +KE VM +F     ++
Sbjct: 471 VICPLIEESEKLDVQNAIDVHSMLTHYYKGKYHIGLMHGRLSSEEKEEVMKAFSENRVQV 530

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+E S CIL+  P  S+  
Sbjct: 531 LVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDEQSYCILIADPK-SETG 589

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDA 663
             R+ ++  T DGF+++E+DL+ R  G+  G KQSGMP+F      +HD  +LE+AR DA
Sbjct: 590 KERMRIMTETTDGFVLSEKDLQLRGPGDFFGTKQSGMPEFKFGDV-VHDYRILEVARNDA 648

Query: 664 KHIL 667
             ++
Sbjct: 649 AKLV 652


>gi|312793403|ref|YP_004026326.1| ATP-dependent DNA helicase recg [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180543|gb|ADQ40713.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 679

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/613 (37%), Positives = 363/613 (59%), Gaps = 19/613 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101
           DLL++ P  ++D     KI E+ +  I +    ++ +    + +  +  KI + D TG +
Sbjct: 32  DLLWHIPRKYLDYSRLKKIRELCDGEIESFVAKVAGKPVEIETRSVKIIKIPVEDSTGVV 91

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
           T ++F +  + +KNV  EG     +GKI++    I + +P +  ++ Q ++   I  VY+
Sbjct: 92  TTVWFNQ--DYIKNVLKEGEIFCFSGKIERKGFYIEVKNPEFEKYDQQLLHTGRIVPVYN 149

Query: 162 LPTGLSVDLFKKIIVEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
              GLS  + + I+   L +     + ++P +I     QK +   I  A   IH P    
Sbjct: 150 STEGLSQKVIRNIVNNLLHQVDGMLIDIIPPYIR----QKYNLRDINFAIKNIHFPENKL 205

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
             E    AR+RL ++E    Q++LLL+++  +K  GI I       ++  + +PF  T++
Sbjct: 206 SLEL---ARKRLVFEEFYLLQLSLLLLKENIEKNEGIKIENAQSSLKEFEKLLPFELTEA 262

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+  + +I QD+    +M R++QGDVG GKT+VAL +  A ++AG Q  +MAP  +LA Q
Sbjct: 263 QKRVLAEIAQDLESTKQMNRLIQGDVGCGKTVVALASAYATIKAGYQVALMAPTEVLALQ 322

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY   KKY  N +  V ++ G+ P+  +   L+ + HG   ++IGTHAL QD +++  L 
Sbjct: 323 HYNECKKYFGN-KFNVRLLIGSTPKKEKEIILKELEHGLCKMVIGTHALIQDEVKFKNLG 381

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L I DEQHRFGV QR++LT+K ++P++L+MTATPIPRTL L   GD+DIS I + P GRK
Sbjct: 382 LAITDEQHRFGVIQRVELTKKGSSPNILVMTATPIPRTLSLVLYGDLDISIIDQLPPGRK 441

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514
            I T  +  +    V   +K  L EG++ YWICP IEE +  N +S VE   SL E F  
Sbjct: 442 KILTYAVDESFRQRVYNFIKKQLDEGRQVYWICPLIEESETLNAKSAVEFAKSLKEGFFK 501

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             ++  +HG++S  +++ +++ FK+G   +L++TTV+EVGI+V +A++++IENAE FGLA
Sbjct: 502 DYNVGCLHGKLSAKERDKILNDFKDGHIHILVSTTVVEVGINVPNATVMVIENAERFGLA 561

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRGE  S CI L++   S+ +  R+  +  +++GF IAE DLK R  G++ 
Sbjct: 562 QLHQLRGRVGRGEHQSYCI-LFNQSDSEIAKKRMIAITRSQNGFEIAEMDLKLRGPGDLF 620

Query: 635 GIKQSGMPKFLIA 647
           G KQ G+  F +A
Sbjct: 621 GTKQHGIMNFKVA 633


>gi|260558329|ref|ZP_05830525.1| ATP-dependent DNA helicase RecG [Enterococcus faecium C68]
 gi|293567889|ref|ZP_06679230.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1071]
 gi|260075503|gb|EEW63809.1| ATP-dependent DNA helicase RecG [Enterococcus faecium C68]
 gi|291589474|gb|EFF21281.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1071]
          Length = 678

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 234/665 (35%), Positives = 379/665 (56%), Gaps = 27/665 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           ++  VT+ G +      + F  +K R  ++++       ++  FF +    LK       
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILSE 109

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +I V GK      R  +     +   + D   P+     S+     VDL KK   E  + 
Sbjct: 110 EIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT- 166

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
             ++ E +  +L++K      A A   +H P   KD E    A+ R+ ++E    Q+ L 
Sbjct: 167 --LIEENLPNNLVEKYRLLDRASAVRSMHFP---KDHEENHQAKRRVVFEEFFLFQMRLQ 221

Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++K  K E  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQG
Sbjct: 222 GLKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQG 281

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ + ++TG+  
Sbjct: 282 DVGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTIALLTGSTK 341

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+ LE++  G+ +++IGTHAL QD +++  L LVI DEQHRFGV QR  L +K   
Sbjct: 342 AKERRELLEKLGQGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWR 401

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  K  L+
Sbjct: 402 PDVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTKKELA 461

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538
            G + Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK
Sbjct: 462 RGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFK 521

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +   ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P
Sbjct: 522 DNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANP 581

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F IA      ++LE+
Sbjct: 582 K-NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEV 640

Query: 659 ARKDA 663
           AR++A
Sbjct: 641 AREEA 645


>gi|170288540|ref|YP_001738778.1| ATP-dependent DNA helicase RecG [Thermotoga sp. RQ2]
 gi|170176043|gb|ACB09095.1| ATP-dependent DNA helicase RecG [Thermotoga sp. RQ2]
          Length = 763

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 234/634 (36%), Positives = 355/634 (55%), Gaps = 21/634 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL + P  + DR    K++++     VT  G I    + + Q       +L+DG   + 
Sbjct: 124 DLLEFFPRDYEDRRKIFKLNDLLPGEKVTTQGKIVSVETKRFQNMNILTAVLSDGLVHVP 183

Query: 103 LLFFYRKTEMLKNVF--FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ-----DVNFPL 155
           L +F    E L+       G+++ VTG +K            Y  HN++           
Sbjct: 184 LKWF--NQEYLQTYLKQLTGKEVFVTGTVKS-----NAYTGQYEIHNAEVTPKEGEYVRR 236

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           I  +Y L +G+S    +KI  E +  L   L E + + +L+K+    + +A+  +H P  
Sbjct: 237 ILPIYRLTSGISQKQMRKIFEENIPSLCCSLKETLPERILEKRKLLGVKDAYYGMHFP-- 294

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            K F     ARERLAY+EL   Q+A   +RK+ +K  GIP  +EGK+A++ ++++PF  T
Sbjct: 295 -KTFYHLEKARERLAYEELFVLQLAFQKIRKEREKHGGIPKKIEGKLAEEFIKSLPFKLT 353

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            +Q+ A ++I  DM  +  M R+LQGDVGSGKT+VA +A+    EAG Q   M P  ILA
Sbjct: 354 NAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILA 413

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            QHY    +      I V ++ G    + + K    + +GQ  ++IGTHAL Q+ + +  
Sbjct: 414 IQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKN 473

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L LVI+DEQHRFGV+QR  L  K      L+M+ATPIPR++ L   GD+D++ I E P G
Sbjct: 474 LGLVIIDEQHRFGVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG 533

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           RK ++T+++P++R++E+ E ++  + +G +A+ + P IEE  + N +S VE +  L +  
Sbjct: 534 RKEVQTMLVPMDRVNEIYEFVRQEVMKGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV 593

Query: 515 TSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                + ++HGR+S  +K+ VM  F  G   +L++TTVIEVGIDV  A++++IEN E FG
Sbjct: 594 FPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFG 653

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LAQLHQLRGRVGRG + + C L+    + + +  RL       DGF IAE DLK R  GE
Sbjct: 654 LAQLHQLRGRVGRGGQEAYCFLVVG-DVGEEAMERLRFFTLNTDGFKIAEYDLKTRGPGE 712

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
             G+KQ G+  F +A       LLE AR+D + I
Sbjct: 713 FFGVKQHGLSGFKVADLYRDLKLLEWAREDVQEI 746


>gi|312622538|ref|YP_004024151.1| ATP-dependent DNA helicase recg [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203005|gb|ADQ46332.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 679

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 233/615 (37%), Positives = 367/615 (59%), Gaps = 23/615 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGE 100
           DLL++ P  ++D     KI E+ +  I +    ++     +++ R  +  KI + D TG 
Sbjct: 32  DLLWHIPRKYLDYSRLKKIRELCDGEIESFVAKVA-GKPLEIETRSVKIIKIPVEDSTGV 90

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           +T ++F +  + +KNV  EG     +GKI++    I + +P +  ++   ++   I  VY
Sbjct: 91  VTTVWFNQ--DYIKNVLKEGEVFCFSGKIERKGFYIEVKNPEFEKYDQHLIHTGRIVPVY 148

Query: 161 SLPTGLSVDLFKKIIVEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
           +   GLS  + + I+   L +     + ++P +I     QK +   I  A   IH P   
Sbjct: 149 NSTEGLSQKVIRNIVNNLLQQVDGMLIDIIPPYIR----QKYNLSEINFAIKNIHFPENK 204

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPT 274
              E    AR+RL ++E    Q++LLL+++  +K  GI I NV+  + ++  + +PF  T
Sbjct: 205 LSLEL---ARKRLVFEEFYLLQLSLLLLKENIEKNEGIKIENVQSSL-KEFEKLLPFELT 260

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            +Q+  + +I QD+    +M R++QGDVG GKT+VAL +  A ++AG Q  +MAP  +LA
Sbjct: 261 DAQKRVLAEIAQDLESTKQMNRLIQGDVGCGKTVVALASAYATIKAGYQVALMAPTEVLA 320

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            QHY   KKY  N +  V ++ G+ P+  +   L+ + HG   ++IGTHAL QD +++  
Sbjct: 321 LQHYNECKKYFDN-KFNVRLLIGSTPKKEKEIILKELEHGLCKMVIGTHALIQDDVKFKN 379

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L I DEQHRFGV QR++LT+K ++P++L+MTATPIPRTL L   GD+DIS I + P G
Sbjct: 380 LGLAITDEQHRFGVIQRVELTKKGSSPNILVMTATPIPRTLSLVLHGDLDISIIDQLPPG 439

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           RK I T  +  +    V   +K  L EG++ YWICP IEE +  N +S VE   SL E F
Sbjct: 440 RKKILTYAVDESFRQRVYNFIKKQLDEGRQVYWICPLIEESETLNAKSAVEFAKSLKEGF 499

Query: 515 --TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               ++A +HG++S  +++ +++ FK+G   +L++TTV+EVGI+V +A++++IENAE FG
Sbjct: 500 FKDYNVACLHGKLSAKERDKILNDFKDGHIHILVSTTVVEVGINVPNATVMVIENAERFG 559

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LAQLHQLRGRVGRGE  S CI L++   S+ +  R+  +  +++GF IAE DLK R  G+
Sbjct: 560 LAQLHQLRGRVGRGEYQSYCI-LFNQSDSEIAKKRMIAITRSQNGFEIAEMDLKLRGPGD 618

Query: 633 ILGIKQSGMPKFLIA 647
           + G KQ G+  F +A
Sbjct: 619 LFGTKQHGIMNFKVA 633


>gi|261207034|ref|ZP_05921723.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TC 6]
 gi|289565332|ref|ZP_06445782.1| ATP-dependent DNA helicase RecG [Enterococcus faecium D344SRF]
 gi|294615352|ref|ZP_06695225.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1636]
 gi|260078662|gb|EEW66364.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TC 6]
 gi|289162822|gb|EFD10672.1| ATP-dependent DNA helicase RecG [Enterococcus faecium D344SRF]
 gi|291591726|gb|EFF23362.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1636]
          Length = 678

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 233/665 (35%), Positives = 379/665 (56%), Gaps = 27/665 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           ++  VT+ G +      + F  +K R  ++++       ++  FF +    LK       
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILSE 109

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +I V GK      R  +     +   + D   P+     S+     VDL KK   E  + 
Sbjct: 110 EIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT- 166

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
             ++ E +  +L++K      A A   +H P   KD E    A+ R+ ++E    Q+ L 
Sbjct: 167 --LIEENLPNNLVEKYRLLDRASAVRSMHFP---KDHEENHQAKRRVVFEEFFLFQMRLQ 221

Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++K  K E  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQG
Sbjct: 222 GLKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQG 281

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ + ++TG+  
Sbjct: 282 DVGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTIALLTGSTK 341

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+ LE++  G+ +++IGTHAL QD +++  L LVI DEQHRFGV QR  L +K   
Sbjct: 342 AKERRELLEKLGQGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWR 401

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  K  L+
Sbjct: 402 PDVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTKKELA 461

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538
            G + Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK
Sbjct: 462 RGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFK 521

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +   ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P
Sbjct: 522 DNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANP 581

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F +A      ++LE+
Sbjct: 582 K-NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAVADLVTDGNVLEV 640

Query: 659 ARKDA 663
           AR++A
Sbjct: 641 AREEA 645


>gi|15675625|ref|NP_269799.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes M1 GAS]
 gi|71911332|ref|YP_282882.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS5005]
 gi|13622833|gb|AAK34520.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes M1 GAS]
 gi|71854114|gb|AAZ52137.1| ATP-dependent DNA helicase [Streptococcus pyogenes MGAS5005]
          Length = 671

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 248/672 (36%), Positives = 379/672 (56%), Gaps = 32/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D   +     +  E+
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 57  AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL---SRLP 183
           GK    K+ I  +    +    +D   P    VY +  G+S     K I  A    + L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEIDAHLE 166

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            L E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L ++
Sbjct: 167 -LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVL 222

Query: 244 RKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           + + K E  G+PI    +  +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDV
Sbjct: 223 KAENKSETNGLPILYSKRAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDV 282

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++   +  I   I+T  M  A
Sbjct: 283 GSGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAA 340

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P 
Sbjct: 341 VKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD 400

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L + 
Sbjct: 401 VLMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKD 460

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540
            + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+ 
Sbjct: 461 AQVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDK 520

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  
Sbjct: 521 KSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK- 579

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           + +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR
Sbjct: 580 TDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEAR 639

Query: 661 KDAKHILTQDPD 672
           K +  I++ DP+
Sbjct: 640 KVSAAIVS-DPN 650


>gi|291536243|emb|CBL09355.1| ATP-dependent DNA helicase RecG [Roseburia intestinalis M50/1]
          Length = 685

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 240/676 (35%), Positives = 359/676 (53%), Gaps = 31/676 (4%)

Query: 11  APLSTFRGVGKKYSLFLSKI--INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +PL   +GVG K      KI     G        D+L ++P ++I       + E+ +  
Sbjct: 5   SPLREIKGVGAKTEELFHKIGVYTVG--------DILLHYPRTYIQYPQAKHVDEVLDGE 56

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              + G I++     ++K R  +I +      G    L +YR   M KN    G      
Sbjct: 57  QAAVLGRITRTPV--VRKLRTMQITVTTISEMGASLELVWYRMPYM-KNNLKVGSTYIFY 113

Query: 127 GKIKKLKNRIIMVHPHYI----FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           GK+ K   R++M          + + + V  P    VY+L  GLS +L  K +  AL   
Sbjct: 114 GKVNKKNGRLVMEQAAMFTEEQYASMEQVFLP----VYTLTNGLSNNLVTKTVRAALGDE 169

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            +  +++   + +K        A   IH P   +D E    AR RL +DE     +++  
Sbjct: 170 RLFMDYLPHAIREKYGLCEYNYAIRQIHFP---EDMETLITARRRLVFDEFFLFILSMQY 226

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +++  KE    +  E     +++  +P+  T +Q+ A+ D+ +DM  +  M R++QGDV
Sbjct: 227 QKEKHVKEKNEFVFAEDDFTDELIEQLPYELTNAQKKALADVKRDMRSETVMQRLIQGDV 286

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMP 360
           GSGKT+VA +AMA     G Q+ IMAP  +LA+QHYE  +   +     I + ++TG+M 
Sbjct: 287 GSGKTIVAFLAMADTAHNGYQSAIMAPTEVLARQHYESYQSMCEQFGLHIPIVLLTGSMT 346

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +R+A E +      +IIGTHAL Q+   Y  L LVI DEQHRFGV+QR     K T 
Sbjct: 347 AKQKRRAYEALEVYSNAMIIGTHALIQEKAIYQNLALVITDEQHRFGVRQRETFAGKGTE 406

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PHVL+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++      +    ++  + 
Sbjct: 407 PHVLVMSATPIPRTLAIIIYGDLDISVIDEVPAKRLPIKNCVVDRRYRPKAYAFIEHEIR 466

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFK 538
           EG +AY ICP +EE +     +V +    L E     I I  +HG+M    K  +MD F 
Sbjct: 467 EGHQAYVICPLVEESENMEAENVTDYAKRLREELPEDIVIGVLHGQMKAEQKNKIMDQFV 526

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               ++L++TTV+EVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CI++ + 
Sbjct: 527 KNEIQVLVSTTVVEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGDAQSYCIMV-NA 585

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             SKNS  RL +L  + DGF IA EDLK R  G+  GI+QSG  +FL+A      S+L+ 
Sbjct: 586 SDSKNSMKRLDILNKSNDGFKIASEDLKLRGPGDFFGIRQSGEMQFLLADIYQDASVLQQ 645

Query: 659 ARKDAKHILTQDPDLT 674
           A ++ + +L  DP+L 
Sbjct: 646 ASEEVQDLLATDPELC 661


>gi|139473203|ref|YP_001127918.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes str.
           Manfredo]
 gi|134271449|emb|CAM29669.1| ATP-dependent DNA helicase [Streptococcus pyogenes str. Manfredo]
          Length = 671

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 248/672 (36%), Positives = 378/672 (56%), Gaps = 32/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D   +     +  E+
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 57  AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL---SRLP 183
           GK    K+ I  +    +    +D   P    VY +  G+S     K I  A    + L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEIDAHLE 166

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            L E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L ++
Sbjct: 167 -LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVL 222

Query: 244 RKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           + + K E  G+PI       +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDV
Sbjct: 223 KAENKSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDV 282

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++   +  I   I+T  M  A
Sbjct: 283 GSGKTVIASLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAA 340

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P 
Sbjct: 341 VKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD 400

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L + 
Sbjct: 401 VLMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKD 460

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540
            + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+ 
Sbjct: 461 AQVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDK 520

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  
Sbjct: 521 KSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK- 579

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           + +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR
Sbjct: 580 TDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEAR 639

Query: 661 KDAKHILTQDPD 672
           K +  I++ DP+
Sbjct: 640 KVSAAIVS-DPN 650


>gi|312127713|ref|YP_003992587.1| ATP-dependent DNA helicase recg [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777732|gb|ADQ07218.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 679

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 232/614 (37%), Positives = 366/614 (59%), Gaps = 21/614 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101
           DLL++ P  ++D     KI E+ +  I +    ++ +    + +  +  KI + D TG +
Sbjct: 32  DLLWHIPRKYLDYSRLKKIRELCDGEIESFVAKVAGKPVEIETKSVKIIKIPVEDSTGVV 91

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
           T ++F +  + +KNV  EG     +GKI++    I + +P +  ++   ++   I  VY+
Sbjct: 92  TTVWFNQ--DYIKNVLKEGEIFCFSGKIERKGFYIEVKNPEFEKYDQHLLHTGRIVPVYN 149

Query: 162 LPTGLSVDLFKKIIVEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
              GLS  + + I+   L +     + ++P +I     QK +   I  A   IH P    
Sbjct: 150 STEGLSQKVIRNIVNNLLKQVDGMLIDIIPPYIR----QKYNLSEINFAIKNIHFPENKL 205

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTK 275
             E    AR+RL ++E    Q++LLL+++  +K  GI I NV+  + ++  + +PF  T+
Sbjct: 206 SLEL---ARKRLVFEEFYLLQLSLLLLKENIEKNEGIKIENVQSSL-KEFEKLLPFELTE 261

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q+  + +I QD+    +M R++QGDVG GKT+VAL +  A ++AG Q  +MAP  +LA 
Sbjct: 262 AQKRVLAEIAQDLESTKQMNRLIQGDVGCGKTVVALASAYATIKAGYQVALMAPTEVLAL 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY   KKY  N +  V ++ G+ P+  +   L+ + HG   ++IGTHAL QD +++  L
Sbjct: 322 QHYNECKKYFGN-KFNVRLLIGSTPKKEKEIILKELEHGLCKMVIGTHALIQDEVKFKNL 380

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L I DEQHRFGV QR++LT+K ++P++L+MTATPIPRTL L   GD+DIS I + P GR
Sbjct: 381 GLAITDEQHRFGVIQRVELTKKGSSPNILVMTATPIPRTLSLVLYGDLDISIIDQLPPGR 440

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF- 514
           K I T  +  +    V   +K  L EG++ YWICP IEE +  N +S VE   SL E F 
Sbjct: 441 KKILTYAVDESFRQRVYNFIKKQLDEGRQVYWICPLIEESETLNAKSAVEFAKSLKEGFF 500

Query: 515 -TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +I  +HG++S  +++ +++ FK+G   +L++TTV+EVGI+V +A++++IENAE FGL
Sbjct: 501 KDYNIGCLHGKLSAKERDKILNDFKDGHIHILVSTTVVEVGINVPNATVMVIENAERFGL 560

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           AQLHQLRGRVGRGE  S CI L++   S+ +  R+  +  +++GF IAE DLK R  G++
Sbjct: 561 AQLHQLRGRVGRGEHQSYCI-LFNQSDSEITKKRMIAITRSQNGFEIAEMDLKLRGPGDL 619

Query: 634 LGIKQSGMPKFLIA 647
            G KQ G+  F +A
Sbjct: 620 FGTKQHGVMNFKVA 633


>gi|257885669|ref|ZP_05665322.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,501]
 gi|294618523|ref|ZP_06698085.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1679]
 gi|257821525|gb|EEV48655.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,501]
 gi|291595223|gb|EFF26554.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1679]
          Length = 678

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 235/665 (35%), Positives = 379/665 (56%), Gaps = 27/665 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           ++  VT+ G +      + F  +K R  ++++       ++  FF +    LK       
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILSE 109

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +I V GK      R  +     +   + D   P+     S+     VDL KK   E  + 
Sbjct: 110 EIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT- 166

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
             ++ E +  +L++K      A A   +H P   KD E    A+ R+ ++E    Q+ L 
Sbjct: 167 --LIEENLPNNLVEKYRLLDRASAVRSMHFP---KDHEENHQAKRRVVFEEFFLFQMRLQ 221

Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++K  K E  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQG
Sbjct: 222 GLKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQG 281

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ + ++TG+  
Sbjct: 282 DVGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTIALLTGSTK 341

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+ LE++  G+ +I+IGTHAL QD +++  L LVI DEQHRFGV QR  L +K   
Sbjct: 342 AKERRELLEKLEQGEINIVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWR 401

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  K  L+
Sbjct: 402 PDVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTKKELA 461

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538
            G + Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK
Sbjct: 462 RGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFK 521

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +   ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P
Sbjct: 522 DNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANP 581

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F IA      ++LE+
Sbjct: 582 K-NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEV 640

Query: 659 ARKDA 663
           AR++A
Sbjct: 641 AREEA 645


>gi|213650299|ref|ZP_03380352.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 574

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/545 (40%), Positives = 324/545 (59%), Gaps = 20/545 (3%)

Query: 138 MVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VLPEWIEK 191
           M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    + E +  
Sbjct: 9   MIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAIAELLPP 66

Query: 192 DLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALLLMRKQF 247
           +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L +R   
Sbjct: 67  ELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSMLALRAGA 124

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++    P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++QGDVGSGKT
Sbjct: 125 QRYHTQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGDVGSGKT 184

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           LVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G      R+  
Sbjct: 185 LVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKGKARQAQ 244

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHV 423
            E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K       PH 
Sbjct: 245 QEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQ 304

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEG 482
           L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++    +EG
Sbjct: 305 LIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRNACTTEG 364

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM +FK G 
Sbjct: 365 RQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGE 424

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY  PLS
Sbjct: 425 LHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKSPLS 484

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           K +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      +++   ++
Sbjct: 485 KTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQR 544

Query: 662 DAKHI 666
            A+HI
Sbjct: 545 IARHI 549


>gi|56964070|ref|YP_175801.1| ATP-dependent DNA helicase RecG [Bacillus clausii KSM-K16]
 gi|56910313|dbj|BAD64840.1| ATP-dependent DNA helicase RecG [Bacillus clausii KSM-K16]
          Length = 681

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 246/685 (35%), Positives = 374/685 (54%), Gaps = 56/685 (8%)

Query: 13  LSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           ++  +GVG++    L+K  I+  G        DLL Y P  + D   +       +ER V
Sbjct: 8   VTAIKGVGEESGKLLNKMGILTVG--------DLLEYFPFRYEDYALKRPTEAAHDER-V 58

Query: 71  TITGYISQHSSFQLQKRRPYKILLN---DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           T+ G I   +S +   +   ++      DG   +T  FF R    LK+    G  +TVTG
Sbjct: 59  TMAGKIQNEASVRYYGKNKNRLTFRIEVDGV-LVTATFFNRA--FLKSKLQPGMDVTVTG 115

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIE------AVYSLPTGLSVDLFKKIIVEALSR 181
           K             H +     ++ F ++E       VY     ++    +K I  A S 
Sbjct: 116 KWD----------AHRLTITGSELKFGIVEREGNLEPVYHSSGKVTSKALQKWIAAAFSA 165

Query: 182 LPV-----LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
                   LPE I K    +       EA   +H P    + E T  AR R  Y+ELL  
Sbjct: 166 YGSQIEDPLPESIRK----RYKLMGKGEALRHLHYPF---NREATKQARRRYVYEELLLF 218

Query: 237 QIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ +   ++  + ++ G  ++V+          +PF  T +Q+ AI DI+ D+    RM 
Sbjct: 219 QLKMRAFKEAIRNQQGGGQLDVKEDDIAAFTSLLPFPLTGAQQRAIADIVSDIRSPLRMN 278

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT VA   MA  V AGGQ  +MAP  ILA+QH   I+ + +   +   ++
Sbjct: 279 RLLQGDVGSGKTAVAAACMAGVVGAGGQCALMAPTEILAEQHATTIEAWFEPLGLKTALL 338

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
            G++    RR+ L++IA G+  I+IGTHAL Q+ + +  L LVI DEQHRFGV+QR  L 
Sbjct: 339 VGSVKGKKRRELLDQIAKGEVDIVIGTHALIQEDVVFSTLSLVITDEQHRFGVEQRRILR 398

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K   P VL MTATPIPRTL ++  GD+D+S + E PAGRKPI+T  +    ++ V+E +
Sbjct: 399 DKGEHPDVLFMTATPIPRTLAISVFGDMDVSVLDEMPAGRKPIETYWVQHEMLERVLEFV 458

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
           +  + +G++AY ICP IEE ++ + ++ ++  + L  HF   + + ++HGR+   +KE+V
Sbjct: 459 RKEVKKGRQAYVICPLIEESEKLDVQNAIDFHSMLTAHFQGDAQVGLMHGRLQAAEKEAV 518

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +F      +L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG+E S CI
Sbjct: 519 MAAFARNELHILVSTTVVEVGVNVPNATVMVIYDADRFGLAQLHQLRGRVGRGDEKSYCI 578

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+  P  ++    R+ ++  T DGF+++E DL+ R  G+  G KQSG+P F +A   +HD
Sbjct: 579 LVAQPK-TEVGKERMRIMTETSDGFVLSERDLELRGPGDFFGSKQSGLPDFKLADV-VHD 636

Query: 654 -SLLEIARKDAKHI-----LTQDPD 672
              LE AR+DA  I     L  DP+
Sbjct: 637 YRTLEAARQDADRIFKANVLKTDPE 661


>gi|303236600|ref|ZP_07323181.1| ATP-dependent DNA helicase RecG [Prevotella disiens FB035-09AN]
 gi|302483104|gb|EFL46118.1| ATP-dependent DNA helicase RecG [Prevotella disiens FB035-09AN]
          Length = 698

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 245/678 (36%), Positives = 383/678 (56%), Gaps = 34/678 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE-ISEERIVT 71
           L    GVG +    LSK +       + + DLL Y+P  ++DR     ISE + +   V 
Sbjct: 8   LMYLSGVGPRKKEILSKELGI-----STYRDLLEYYPYKYVDRTKVYLISELVPDMPFVQ 62

Query: 72  ITGYISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G I     F++ KR+   +   +DG G   L++F     + KN +  G++  V GK  
Sbjct: 63  IKGRILSFEEFEMGKRKKRVVAHFSDGHGVCDLVWFNGSQYIYKN-YIIGKEYIVFGKPT 121

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRL-PV 184
               R    HP     +   +N   ++  Y         G++    +K+    +++L   
Sbjct: 122 VYNGRFNFSHPDIDEASELQLNDMGMQPFYITTEKMKKAGITSRAIEKLTKTLIAKLNTT 181

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM- 243
           LPE +   + ++    S  EA   IH P+  +D   T  A+ RL ++EL   Q+ +L   
Sbjct: 182 LPETLPDFITERLHLISRNEAVRKIHYPKSIED---TQRAKVRLKFEELFYVQLNILRYA 238

Query: 244 ---RKQFK----KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
              R++++    K++G   N           N+PF  T +Q+  +K+I  DM    +M R
Sbjct: 239 SDHRRKYRGLYFKKVGAQFN------WFYAHNLPFELTNAQKRVMKEIRADMGSGQQMNR 292

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKTLVAL++M  AV+ G QA +MAP  ILA+QH + +K + +   + +E++T
Sbjct: 293 LLQGDVGSGKTLVALMSMLIAVDNGFQACLMAPTEILAEQHLQTLKDFLKGMNLRIELLT 352

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G +    R++ L+ +  G  HII+GTHA+ +D +Q+  L L ++DEQHRFGV QR KL  
Sbjct: 353 GIVKGKKRKEVLDGLLDGSIHIIVGTHAIIEDKVQFNNLGLAVIDEQHRFGVAQRAKLWS 412

Query: 417 K-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           K    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+     +   + + +
Sbjct: 413 KNENPPHVLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKFDTQTVSLYDGI 472

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVM 534
           +  +  G++ Y + P I+E ++ + +++   + +L E F   S++ IHG+M D +KE+ M
Sbjct: 473 RKQIQLGRQVYIVFPLIKESEKIDLKNLESGYEALKEVFPECSMSKIHGKMKDKEKEAEM 532

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG E S CIL
Sbjct: 533 KLFVEGKTQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGAEQSYCIL 592

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHD 653
           + +  L+  +  R+ ++ +T DGF IAE DLK R  G++ G +QSG+   L IA      
Sbjct: 593 VTNQKLTTETRKRIEIMCDTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDG 652

Query: 654 SLLEIARKDAKHILTQDP 671
            L+++AR +AK I+  DP
Sbjct: 653 QLVQMARDEAKRIIEDDP 670


>gi|317969805|ref|ZP_07971195.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CB0205]
          Length = 811

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/683 (34%), Positives = 372/683 (54%), Gaps = 33/683 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS  RGVG K +  L+ +      +     DL+ Y+P  ++D     +I+ +   +  T
Sbjct: 117 PLSEVRGVGPKSATRLAAL------DLWLARDLVRYYPRDYLDYANLVRIAGLEPGKTAT 170

Query: 72  ITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFE--------G 120
           I   + +  SF   +     IL   L D TG I +  F+         + +        G
Sbjct: 171 IVATVRRSHSFTSPRNPNLSILELHLADITGRIRVSKFFAGKRFSSPAWLKAQQRNYPVG 230

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-----FPLIEAVYSLPTGLSVDLFKKII 175
             + ++G +K+         P      S + +        +  VY L  GL+ D  + +I
Sbjct: 231 ASVAISGLVKETPYGPAFQDPLMEVLESPNASVRSDQIGRLLPVYGLTEGLTADRLRNLI 290

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
              ++      + +   L  ++    + EA   IH P         S AR RL +DE L 
Sbjct: 291 RPVVAAAGQWGDPLPASLQAREGLVPLPEALLQIHGPTSQASL---SEARHRLVFDEFLL 347

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-PFSPTKSQESAIKDILQDMSQKNRM 294
            Q+ LL  R+Q        + VEG    +    + PF  T +Q+  + +I  D+ +   M
Sbjct: 348 LQLGLLQRRRQLTSRPAPALAVEGDALLQAFLQLLPFPLTGAQQRVLAEIRADLRRDQPM 407

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++QGDVGSGKT+VA+ A+  A+++G Q  +MAP  +LA+QHY  + ++     +   +
Sbjct: 408 ARLVQGDVGSGKTVVAIAALLTAIDSGCQGALMAPTEVLAEQHYRKLCEWLPQLHVTCAL 467

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+ P   RR+ L  +A+G   +++GTHAL +D +Q+ +L LV+VDEQHRFGV QR +L
Sbjct: 468 LTGSTPLRRRRELLADLANGTLKMLVGTHALLEDPVQFQRLGLVVVDEQHRFGVHQRNRL 527

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K   PH+L MTATPIPRTL L+  GD+++S+I E P GR PI+T ++     DE    
Sbjct: 528 LDKGLQPHLLTMTATPIPRTLALSIHGDLEVSQIDELPPGRTPIRTSLLASADRDEAYSL 587

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKES 532
           ++  ++ G++AY + P +EE ++ + RS V+    L E    +  + ++HGRM   DK++
Sbjct: 588 IREQVALGQRAYVVLPLVEESEKLDLRSAVDVHQQLSEQVFPNLQVGLLHGRMPSADKQA 647

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            + +F +G  ++L++TTV+EVG+DV +AS+++I++A+ FGLAQLHQLRGRVGRG   S C
Sbjct: 648 AITAFASGETQVLVSTTVVEVGVDVPEASVMVIDHADRFGLAQLHQLRGRVGRGAAASYC 707

Query: 593 ILLYHPPLSKN--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
           +L+     S+N  +  RL VL  + DGF IAE DL+ R  G++LG +QSG+P   +A   
Sbjct: 708 LLVND---SRNVLARQRLEVLVRSNDGFEIAEMDLRLRGPGQVLGTRQSGLPDLALASLT 764

Query: 651 LHDSLLEIARKDAKHILTQDPDL 673
               +LE AR+ A+ I+ +DPDL
Sbjct: 765 DDGEVLEQARRVAQEIVAEDPDL 787


>gi|291538889|emb|CBL12000.1| ATP-dependent DNA helicase RecG [Roseburia intestinalis XB6B4]
          Length = 685

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 240/676 (35%), Positives = 359/676 (53%), Gaps = 31/676 (4%)

Query: 11  APLSTFRGVGKKYSLFLSKI--INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +PL   +GVG K      KI     G        D+L ++P ++I       + E+ +  
Sbjct: 5   SPLREIKGVGAKTEELFHKIGVYTVG--------DILLHYPRTYIQYPQAKHVDEVLDGE 56

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              + G I++     ++K R  +I +      G    L +YR   M KN    G      
Sbjct: 57  QAAVLGRITRTPV--VRKVRTMQITVTTISEMGASLELVWYRMPYM-KNNLKVGSTYIFY 113

Query: 127 GKIKKLKNRIIMVHPHYI----FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           GK+ K   R++M          + + + V  P    VY+L  GLS +L  K +  AL   
Sbjct: 114 GKVNKKNGRLVMEQAAMFTEEQYASMEQVFLP----VYTLTNGLSNNLVTKTVRAALGDE 169

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            +  +++   + +K        A   IH P   +D E    AR RL +DE     +++  
Sbjct: 170 HLFMDYLPHAIREKYGLCEYNYAIRQIHFP---EDMETLITARRRLVFDEFFLFILSMQY 226

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +++  KE    +  E     +++  +P+  T +Q+ A+ D+ +DM  +  M R++QGDV
Sbjct: 227 QKEKHVKEKNEFVFAEDDFTDELIEQLPYELTNAQKKALADVKRDMRSETVMQRLIQGDV 286

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMP 360
           GSGKT+VA +AMA     G Q+ IMAP  +LA+QHYE  +   +     I + ++TG+M 
Sbjct: 287 GSGKTIVAFLAMADTAHNGYQSAIMAPTEVLARQHYESYQSMCEQFGLHIPIVLLTGSMT 346

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +R+A E +      +IIGTHAL Q+   Y  L LVI DEQHRFGV+QR     K T 
Sbjct: 347 AKQKRRAYEALEVYSNAMIIGTHALIQEKAIYQNLALVITDEQHRFGVRQRETFAGKGTE 406

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PHVL+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++      +    ++  + 
Sbjct: 407 PHVLVMSATPIPRTLAIIIYGDLDISVIDEVPAKRLPIKNCVVDRRYRPKAYAFIEHEIR 466

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFK 538
           EG +AY ICP +EE +     +V +    L E     I I  +HG+M    K  +MD F 
Sbjct: 467 EGHQAYVICPLVEESENMEAENVTDYAKRLREELPEDIVIGVLHGQMKAEQKNKIMDQFV 526

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               ++L++TTV+EVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CI++ + 
Sbjct: 527 KNEIQVLVSTTVVEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGDAQSYCIMV-NA 585

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             SKNS  RL +L  + DGF IA EDLK R  G+  GI+QSG  +FL+A      S+L+ 
Sbjct: 586 SDSKNSMKRLDILNKSNDGFKIASEDLKLRGPGDFFGIRQSGEMQFLLADIYQDASVLQQ 645

Query: 659 ARKDAKHILTQDPDLT 674
           A ++ + +L  DP+L 
Sbjct: 646 ASEEVQDLLATDPELC 661


>gi|313886107|ref|ZP_07819842.1| putative ATP-dependent DNA helicase RecG [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924453|gb|EFR35227.1| putative ATP-dependent DNA helicase RecG [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 697

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 241/696 (34%), Positives = 383/696 (55%), Gaps = 35/696 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH-------YRPKI 61
           L  PL+   G+G K +  +++ ++        + DLL+Y P  + DR          P +
Sbjct: 4   LTTPLADLPGLGTKRAQLIAEELDLNT-----YRDLLYYIPYRYADRRVIYPIGSLMPSM 58

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           SE      V I G +   S+  L ++      L D TGE+ LL +++    ++     G 
Sbjct: 59  SE------VQIEGILQPFSAPSLGRKSSLSARLMDDTGEL-LLVWFKGLNYIQRSLTPGC 111

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS---VD-LFKKIIVE 177
           K  V GK++   N++ + HP     +  + +    + VY     L    +D  F    ++
Sbjct: 112 KYIVYGKLQLFNNQLQITHPEIKPADKPNPSVGGYQPVYRTTERLKRARIDSAFLGRYID 171

Query: 178 ALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
            L + P   +PE + + L+  +    +  A   IH+P   +  E    A+ RL YDEL  
Sbjct: 172 QLLQSPYFSIPETLSEPLIAHRHLAPLQTAIRWIHHP---QSVEQAQVAKFRLKYDELFY 228

Query: 236 GQIAL--LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             + L  L + ++ + E G  ++  GK+   +   +P+  T +Q+  +++I +D +   +
Sbjct: 229 LNLYLRRLAVMQRMRYE-GYRLDQVGKLFNSLYHALPYDLTGAQKRVLREIRRDTNSGAQ 287

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKTLVAL AM  AV+ G QA ++AP  ILAQQHYE I ++ +   + + 
Sbjct: 288 MNRLLQGDVGSGKTLVALFAMLLAVDNGYQACMLAPTEILAQQHYETISEFVEGLDVSIA 347

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+     RR+ L  +A G   I+IGTHA+ ++ + + KL + ++DEQHRFGV QR K
Sbjct: 348 LLTGSSKTRERRETLSALADGSLSILIGTHAILEERVAFRKLGMAVIDEQHRFGVAQRSK 407

Query: 414 LTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           L  K   T PH+L+M+ATPIPRTL +T  GD+++S I E P GRKPI TV I   + + +
Sbjct: 408 LWGKNVLTLPHILVMSATPIPRTLAMTMYGDLEVSVIDEMPPGRKPITTVQIAEKKKETL 467

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDK 530
              +   ++ G++ Y + P IE  +ES+F ++   +    E F    +  +HGR+S  DK
Sbjct: 468 YSLINETINRGQQIYVVFPMIEGTEESDFANLEVGYKEYVERFGEKRVVYVHGRLSAEDK 527

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
              M+ F +G   +L+ATTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S
Sbjct: 528 AEQMERFASGEVPILLATTVIEVGVNVPNATVMVINDAQRFGLAQLHQLRGRVGRGGDKS 587

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQP 649
            CIL+    L  ++  R+  +  T+DGF IAEED++ R  G++ G +QSG +    IA P
Sbjct: 588 YCILVTPDDLQGDAKQRIDTMVATQDGFKIAEEDMRLRGFGQMEGTRQSGTLAGIRIADP 647

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            +  +LL + R D  ++L   P L     +  RI L
Sbjct: 648 VVDYNLLALTRLDVNYLLDYSPLLDKPDTELYRINL 683


>gi|281492921|ref|YP_003354901.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis
           KF147]
 gi|281376573|gb|ADA66059.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis
           KF147]
          Length = 666

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 242/644 (37%), Positives = 367/644 (56%), Gaps = 28/644 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100
           DLL Y P  + D   R  + E+ +    TI G +   ++ Q    KR      + +G   
Sbjct: 31  DLLLYFPFRYEDFASR-SVFELVDGEKATIIGTVVTPANVQYYGFKRNRLSFKIKEGEAV 89

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           + + FF +    L +    G++I V GK ++ K +++ +    +     D     +E VY
Sbjct: 90  VAVSFFNQP--YLADKVEVGKEIAVYGKWEQAKQQLMGMK---VVAQVDDG----LEPVY 140

Query: 161 SLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
            L  G+      K+I +      L  LPE + + L++K    +  EA   +H P   +D 
Sbjct: 141 HLTAGMKQSQLVKVIHQVFESDLLSELPENLPEFLIKKYRLMNRQEAVLAMHFP---EDT 197

Query: 219 EWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKS 276
           E    A  R+ ++EL   Q+ L  L  K+     G+ +  E G+I QKI   +PF  T +
Sbjct: 198 EAHKQALRRVKFEELFMFQLKLQALKNKEKSGRAGLEVVFEQGEIDQKI-SELPFELTGA 256

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q SA+ +IL DM     M R+LQGDVGSGKT+VA +AM AA  A  QA IM P  ILA+Q
Sbjct: 257 QLSALSEILTDMKSPYHMNRLLQGDVGSGKTVVASLAMYAACLANFQAAIMVPTEILARQ 316

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+  +K      QI   ++   +  A RR+ L  +  G  H+++GTHAL Q+ + +Y L 
Sbjct: 317 HFANLKALFPELQI--SLLVSGLKVAERREILADLVSGHTHMVVGTHALIQEGVDFYNLG 374

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV QR  L +K   P VL+MTATPIPRTL +T+ GD+D+S I E P GR+
Sbjct: 375 LVITDEQHRFGVNQRKILREKGQNPDVLMMTATPIPRTLAITAFGDMDVSIIDELPKGRQ 434

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           PI T  +   +  EV+  +K  +++  + Y+I P IEE +  + ++    F  L+E+F  
Sbjct: 435 PITTRWVKHEQFSEVLSWIKAEVAKDSQVYFISPLIEESETLDLKNAEALFAELNEYFGL 494

Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I ++HG+M + +K+ +M  FK     +L++TTVIEVG+DV +A+I++I +A+ FGL+
Sbjct: 495 FAKIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVIMDADRFGLS 554

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG + S  IL+ +P  S +   R+ ++  T++GF++AEEDLK R  GEI 
Sbjct: 555 QLHQLRGRVGRGTKKSYAILVANPK-SDSGKQRMKIMTETQNGFILAEEDLKMRGSGEIF 613

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL---TQDPDLTS 675
           G++QSG+P+F+ A      ++LE+ARK+A  I     + PDL +
Sbjct: 614 GLRQSGLPEFIAADLVNDYNILEVARKEAVEIFKNADEFPDLIA 657


>gi|56808185|ref|ZP_00365964.1| COG1200: RecG-like helicase [Streptococcus pyogenes M49 591]
 gi|209559895|ref|YP_002286367.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes NZ131]
 gi|209541096|gb|ACI61672.1| Putative ATP-dependent DNA helicase [Streptococcus pyogenes NZ131]
          Length = 671

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 247/671 (36%), Positives = 378/671 (56%), Gaps = 30/671 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D   +     +  E+
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 57  AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA--LSRLPV 184
           GK    K+ I  +    +    +D   P    VY +  G+S     K I  A  ++    
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEINAHLE 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E  G+PI       +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDVG
Sbjct: 224 AENKSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++   +  I   I+T  M  A 
Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPD 672
            +  I++ DP+
Sbjct: 641 VSAAIVS-DPN 650


>gi|313892557|ref|ZP_07826144.1| ATP-dependent DNA helicase RecG [Dialister microaerophilus UPII
           345-E]
 gi|313118954|gb|EFR42159.1| ATP-dependent DNA helicase RecG [Dialister microaerophilus UPII
           345-E]
          Length = 678

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/592 (36%), Positives = 344/592 (58%), Gaps = 10/592 (1%)

Query: 88  RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN 147
           R   ++L D    +TL +F +  +  K  F    +I   GK++ L  +  + +       
Sbjct: 77  RLLSVILTDNINSVTLTYFNQSWK--KKQFNINEEILAYGKVEYLYGKYQISNAEIEAVP 134

Query: 148 SQDV-NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
            +++ NF  +  +Y L  G++    + +I  AL  +  L E +  ++L +++FP    A 
Sbjct: 135 KENLKNFEKLVPIYPLTEGITATQMRSMIAFALKNVSNLKENLPIEILIRENFPDKLLAI 194

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKI 265
             +HNP+  K+ E    AR+RLA++EL   Q  +L+++++ K    GI     GK+ + +
Sbjct: 195 KTLHNPKNYKEKE---TARKRLAFEELFFMQAGILMLKEKRKINSYGIKCGPSGKLVKSV 251

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L   PF  TK Q+ A  DI  DM     M R+LQGDVGSGKT +A +  A  VE G QA 
Sbjct: 252 LNKFPFELTKDQKKAFSDIENDMEDIEPMYRLLQGDVGSGKTAIAALTAAKIVENGYQAT 311

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           IMAP  +LA QHY+      +N  + +  ++GN+  + R   L ++  G+  I+IGTHAL
Sbjct: 312 IMAPTEVLASQHYKTFLNLYKNLSVEIAYLSGNIKNSEREVLLNKLKSGEIDILIGTHAL 371

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            ++++++  L LVI DEQHRFGV+QR  L  K   PHVL+MTATPIPRT+ L+  GD+D 
Sbjct: 372 IENNVKFAHLGLVITDEQHRFGVKQRELLETKGENPHVLVMTATPIPRTMALSVYGDLDA 431

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I + P GRKP+KT +I    +  V+  +K  + +G +AY +CP +EE ++++  + + 
Sbjct: 432 SVINQMPIGRKPVKTYVINDKLLQRVLIFIKKEIQKGHQAYIVCPLVEESEKTDLAAAIS 491

Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            ++ L ++  S     +I+G+M + +KE +M+ F     ++L+AT+VIEVG++V +A+++
Sbjct: 492 VYDKLRKNIFSEYKCGLIYGKMKNSEKEQIMNDFCENKLQILVATSVIEVGVNVPNATVM 551

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           ++  AE FGL+QLHQLRGRVGRG+  S CI LY    ++ +  RL+++    +GFL++E+
Sbjct: 552 LVYGAERFGLSQLHQLRGRVGRGKIQSYCI-LYTKNTNETTTLRLNIMTKINNGFLLSEK 610

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           DL  R  GE+ G  Q GMP   +A       LLE AR  A+  +  + ++ S
Sbjct: 611 DLMLRGSGELFGYHQHGMPDLKVANIIRDLPLLEKARNYAQKFIHSEKNIKS 662


>gi|188997024|ref|YP_001931275.1| ATP-dependent DNA helicase RecG [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932091|gb|ACD66721.1| ATP-dependent DNA helicase RecG [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 799

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 233/664 (35%), Positives = 376/664 (56%), Gaps = 36/664 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           D LF  P+ + DR  + KI ++ +    T    +         K +   IL  D      
Sbjct: 123 DALFNLPNRYEDRRIK-KILKVKDGETGTFIAEVEDIKKVNKGKLKVEVILKQDNVR--F 179

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
             FF   +  L   F +G+K+ + GK+      I ++ P  I    +D+    I  VYSL
Sbjct: 180 SAFFTHDSPYLFIAFRKGKKVKIFGKVSFFNKNISIIQPE-ILEPVEDI-IDRIAPVYSL 237

Query: 163 -------PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                   TG +++  ++ + + + +   + +++  D+L K +FP +++A   +H P  +
Sbjct: 238 RGDSSVKTTGQTLNHLRRGMYKIVEKFSSVKDYMPDDILSKYNFPPLSKAIKNVHFPEDS 297

Query: 216 KDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
            D +    +    ++RL +DEL   Q+A    R   +K     I+V+        +N+PF
Sbjct: 298 FDIDLLNNFQDIHQKRLIFDELFLLQLAQKYRRYLLQKHPSYKISVDPNFLTNFQKNLPF 357

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q   IK+IL D+ ++  M R++QGDVGSGKT+VA  A  A    G QA +MAP  
Sbjct: 358 ELTQVQIRTIKEILADIQKEIPMNRMVQGDVGSGKTVVAATASLAVALNGYQAAVMAPTE 417

Query: 332 ILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           ILA QHY     F+K Y ++ +I   I+TG+M  + +++  + +  G+  I+IGTHAL +
Sbjct: 418 ILAWQHYHNFKNFLKNYLKDYEIA--ILTGSMKTSEKKQVYKAVELGEIKILIGTHALLE 475

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDIS 446
           + +++  L L +VDEQHRFGV+QR  L +++   PHVL+MTATPIPRTL L + GD+DIS
Sbjct: 476 EKLKFKNLALAVVDEQHRFGVEQRKALIERSDKMPHVLVMTATPIPRTLALANYGDLDIS 535

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
           K+ + P GRKP+KTV++  +  +++ E +K  L++G++A+ + P I+E ++S+ +S  E 
Sbjct: 536 KLDQLPKGRKPVKTVLLFDDEREKMYEIIKQELNKGRQAFVVYPLIQESEKSDLKSAEEG 595

Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +    E F    + ++HG+MS  +K+ +M  FK G   +L++TTVIEVG+DV +A++++I
Sbjct: 596 YKHWQERFPDKKVLLLHGKMSQEEKDEIMKQFKEGKAHILVSTTVIEVGVDVPNATVMVI 655

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP----PLSKN--------SYTRLSVLKN 613
           E A  FGL+Q+HQLRGR+GRG+    C L+       PL  +        +  RL +L  
Sbjct: 656 EEAHRFGLSQIHQLRGRIGRGQYEGYCFLVVPANLKYPLKDSTKEKSRLKTLERLKILVK 715

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IAE+DL+ R  GEI G +QSG   F IA       +LE+A K+A+ ++ +DP+L
Sbjct: 716 TTDGFEIAEKDLELRGTGEITGTRQSGESDFSIADLTRDKEILELATKEAEELIKKDPEL 775

Query: 674 TSVR 677
            + R
Sbjct: 776 ENHR 779


>gi|148269855|ref|YP_001244315.1| ATP-dependent DNA helicase RecG [Thermotoga petrophila RKU-1]
 gi|147735399|gb|ABQ46739.1| ATP-dependent DNA helicase RecG [Thermotoga petrophila RKU-1]
          Length = 779

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/634 (36%), Positives = 356/634 (56%), Gaps = 21/634 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL + P  + DR    K++++     VT  G I    + + Q       +L+DG   + 
Sbjct: 140 DLLEFFPRDYEDRRKIFKLNDLLPGEKVTTQGKIVSVETKRFQNMNILTAVLSDGLVHVL 199

Query: 103 LLFFYRKTEMLKNVF--FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ----DVNFPL- 155
           L +F    E L+       G+++ VTG +K            Y  HN++    +  +   
Sbjct: 200 LKWF--NQEYLQTYLKQLTGKEVFVTGTVKS-----NAYTGQYEIHNAEVTPKEGEYARR 252

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           I  +Y L +G+S    +KI  E +  L   L E + + +L+K+    + +A+  +H P  
Sbjct: 253 ILPIYRLTSGISQKQMRKIFEENIPSLCCSLKETLPERILEKRKLLGVKDAYYGMHFP-- 310

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            K F     ARERLAY+EL   Q+A   +RK+ +K  GIP  +EGK+A++ ++++PF  T
Sbjct: 311 -KTFYHLEKARERLAYEELFVLQLAFQKIRKEREKHGGIPKKIEGKLAEEFIKSLPFKLT 369

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            SQ+ A ++I  DM  +  M R+LQGDVGSGKT+VA +A+    EAG Q   M P  ILA
Sbjct: 370 NSQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILA 429

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            QHY    +      I V ++ G    + + K    + +GQ  ++IGTHAL Q+ + +  
Sbjct: 430 IQHYRRTIESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKN 489

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L LVI+DEQHRFGV+QR  L  K      L+M+ATPIPR++ L   GD+D++ I E P G
Sbjct: 490 LGLVIIDEQHRFGVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG 549

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           RK ++T+++P++R++E+ E ++  + +G +A+ + P IEE  + N +S VE +  L +  
Sbjct: 550 RKEVQTMLVPMDRVNEIYEFVRQEVMKGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV 609

Query: 515 TSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                + ++HGR+S  +K+ VM  F  G   +L++T VIEVGIDV  A++++IEN E FG
Sbjct: 610 FPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTMVIEVGIDVPRANVMVIENPERFG 669

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LAQLHQLRGRVGRG + + C L+    + + +  RL       DGF IAE DLK R  GE
Sbjct: 670 LAQLHQLRGRVGRGGQEAYCFLVVG-DVGEEAMERLRFFTLNTDGFKIAEYDLKTRGPGE 728

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
             G+KQ G+  F +A       LLE AR+D + I
Sbjct: 729 FFGVKQHGLSGFKVADLYRDLKLLEWAREDVQEI 762


>gi|86158152|ref|YP_464937.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774663|gb|ABC81500.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 772

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/636 (36%), Positives = 346/636 (54%), Gaps = 11/636 (1%)

Query: 49  PSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFY 107
           P ++ DR    +ISE+      T+ G ++     +++  +P  K+ + +G   + L+FF 
Sbjct: 113 PRAYQDRTALRRISELRVGDEATVLGTVAHVRIQRMRSGKPLLKVGVQEGGSALELVFFN 172

Query: 108 RKTEMLKNVFFEGRKITVTGKIKK-LKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTG 165
                LK  F  G  +  +GK+ +    R  M  P      + D  NF  I  VY  P  
Sbjct: 173 PPPWRLKQ-FAAGESLLCSGKVTEGFGARRQMSQPEVEKVQAGDSANFGRIVPVYPGPAD 231

Query: 166 LSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEW 220
                 +K++   +  L P   + +  DL  ++     AEA    H P    D     E 
Sbjct: 232 YQHPALRKLMKRLVDELVPAAVDDLPADLRARRELVGRAEALREAHFPPPGTDPLRAAER 291

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
            +PA  RL ++EL   Q+AL + R+  + E GI  +       + +  +PF  T +QE A
Sbjct: 292 VTPAFRRLVFEELFFLQLALAMRRRGVRAEAGIAFDASPAALARAVEPLPFRLTGAQERA 351

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           + +I +DM++   M R+LQGDVGSGKT VA  AM  AV +G QA +M P  ILA QH   
Sbjct: 352 LAEIARDMAEPEPMNRLLQGDVGSGKTAVAFAAMMLAVRSGWQAALMVPTEILAGQHART 411

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           + ++ +   + V ++  +     +R+A   +A G+A I +GTHAL + ++ + +L LV+V
Sbjct: 412 LSRWLEGRGVEVALVGASARGKGQREARAAVAEGRARIAVGTHALLEQAVGFERLGLVVV 471

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQHRFGV QR  L  K   P VL+MTATPIPRTL L   GD+D SKI E P GR P+ T
Sbjct: 472 DEQHRFGVMQRASLISKGRRPDVLVMTATPIPRTLALAFYGDLDQSKIGELPPGRTPVTT 531

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519
            +   ++        +  L  G++ Y + P +EE ++++          L + F    I 
Sbjct: 532 RLFGDSQRKAAYALARGELEAGRQVYVVYPLVEESEKTDLADATTGATELAKVFPGHEIG 591

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           ++HGRM   +K+ VMD F+ G  ++L+ATTVIEVG+DV +AS++I+E+AE FGL+QLHQL
Sbjct: 592 LLHGRMKPDEKQRVMDRFRAGELQVLVATTVIEVGVDVPNASVMIVEHAERFGLSQLHQL 651

Query: 580 RGRVGRGEEISSCILLYH-PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           RGRVGRG   S C+LL H       +  RL  ++ T+DGF IA  DL+ R  GE+LG +Q
Sbjct: 652 RGRVGRGAAKSFCLLLAHFRRAGDEARERLRAMEETQDGFEIARVDLRIRGPGELLGTRQ 711

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           SG     +A     +++LE AR++A  ++ +DPDL 
Sbjct: 712 SGQKLLDVADLYRDEAILEEAREEAFGLVERDPDLA 747


>gi|306826760|ref|ZP_07460062.1| DNA helicase RecG [Streptococcus pyogenes ATCC 10782]
 gi|304431049|gb|EFM34056.1| DNA helicase RecG [Streptococcus pyogenes ATCC 10782]
          Length = 671

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 248/672 (36%), Positives = 378/672 (56%), Gaps = 32/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D   +     +  E+
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 57  AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL---SRLP 183
           GK    K+ I  +    +    +D   P    VY +  G+S     K I  A    + L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEIDAHLE 166

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            L E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L ++
Sbjct: 167 -LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVL 222

Query: 244 RKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           + + K E  G+PI       +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDV
Sbjct: 223 KAENKSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDV 282

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++   +  I   I+T  M  A
Sbjct: 283 GSGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAA 340

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P 
Sbjct: 341 VKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD 400

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L + 
Sbjct: 401 VLMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKD 460

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540
            + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+ 
Sbjct: 461 AQVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDK 520

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  
Sbjct: 521 KSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK- 579

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           + +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR
Sbjct: 580 TDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEAR 639

Query: 661 KDAKHILTQDPD 672
           K +  I++ DP+
Sbjct: 640 KVSAAIVS-DPN 650


>gi|24380195|ref|NP_722150.1| putative ATP-dependent DNA helicase, RecG [Streptococcus mutans
           UA159]
 gi|24378200|gb|AAN59456.1|AE015010_5 putative ATP-dependent DNA helicase, RecG [Streptococcus mutans
           UA159]
          Length = 671

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 243/635 (38%), Positives = 365/635 (57%), Gaps = 27/635 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL----QKRRPYKILLNDGT 98
           DLL Y+P  + D   +  +  +  E+ V +TG +   ++ Q     + R  +KI  ++  
Sbjct: 31  DLLLYYPFRYEDFKAKSVLDLLDGEKAV-VTGKVVTPANVQYYGFKRNRLSFKIKQDEAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    L++     + I + GK  + K+ +  +    I     D   P    
Sbjct: 90  --IAVSFFNQP--YLQDKVELDQDIAIFGKWDQKKSALTGMK---ILAQVTDDMQP---- 138

Query: 159 VYSLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
           VY +  G+S     K I  A     L  L E + + LL K        A   +H P   K
Sbjct: 139 VYHVAQGISQSALIKAIQSAFEAGYLRFLSENLPQVLLNKYRLLDRQTATRAMHFP---K 195

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTK 275
           D E    A  R+ ++EL   Q+ L +++   K E  G+ I  +       +  +PF+ T 
Sbjct: 196 DLEEYKQALRRIKFEELFYFQLNLQVLKANNKSESNGLLITYDHDQVVAKIAALPFALTN 255

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q+ ++ +IL DM     M R+LQGDVGSGKT++A +AM AA  AG Q+ +M P  ILA+
Sbjct: 256 AQKRSLDEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYAAYSAGLQSALMVPTEILAE 315

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHYE ++  T   ++ + ++T  M  A RR AL  IA G   +I+GTHAL Q+ + Y+KL
Sbjct: 316 QHYESLR--TLFPELSIALLTSGMKAAVRRSALAAIADGSVDMIVGTHALIQEGVDYHKL 373

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LVI DEQHRFGV+QR    +K   P VL+MTATPIPRTL +T+ G++D+S I E PAGR
Sbjct: 374 GLVITDEQHRFGVKQRRLFREKGENPDVLMMTATPIPRTLAITAFGEMDVSLIDELPAGR 433

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           KPI T  +   ++D+V+  +K  L + ++ Y I P IEE +  + ++ V     L  +F 
Sbjct: 434 KPIVTRWVKHEQLDKVLPWVKEQLKKKEQVYVISPLIEESETLDLKNAVALEEDLKAYFA 493

Query: 516 SS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           SS  IA++HGRM + +KE++M +FK G+  +L++TTVIEVG++V +A+I+II +A+ FGL
Sbjct: 494 SSANIALMHGRMKNDEKEAIMQAFKKGSIDILVSTTVIEVGVNVPNATIMIIMDADRFGL 553

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           +QLHQLRGRVGRGE+ S  IL+ +P  +     R+ ++  T DGF++AEEDLK R  GEI
Sbjct: 554 SQLHQLRGRVGRGEKRSYAILVANPK-TDTGKNRMRIMTKTTDGFVLAEEDLKMRGSGEI 612

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            G++QSG+P+F +A       +LE ARK A  I+ 
Sbjct: 613 FGVRQSGIPEFQVADIVEDYPILEEARKVASQIVA 647


>gi|255015905|ref|ZP_05288031.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_7]
 gi|262384186|ref|ZP_06077322.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_33B]
 gi|262295084|gb|EEY83016.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_33B]
          Length = 698

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 243/670 (36%), Positives = 371/670 (55%), Gaps = 21/670 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG K +  L K      A  + + DLLFY P  +IDR    K++EIS     + + G I
Sbjct: 14  GVGPKKADILQK-----EAGISSYEDLLFYFPYKYIDRSRFYKVAEISGNMPYIQLKGQI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    + +      +DGTG I L++F +    + + +    +  V GK  +  +  
Sbjct: 69  LYFDTLGEGRSKRLVGKFSDGTGTIDLVWF-KGLNYVTDKYRPNTEYIVFGKPTEFGHTY 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP        D     +   Y+    +         ++ L    +      LPE + 
Sbjct: 128 NIPHPDIDSMEQADQVANGLTPFYNTSEKMKKSFLNSRAIQNLQYTLLSWLNWELPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
            D+L++    S+ EA   IH P  A        A+ RL +DEL   Q+ +L      K +
Sbjct: 188 PDVLKRIHMMSMTEAMRNIHFPESAAKLR---DAQLRLKFDELFFIQLNILRTASVRKLK 244

Query: 251 I-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           + GI     G       +  +PF  T +Q+  +++I  DM    +M R+LQGDVGSGKTL
Sbjct: 245 LKGIVFPTVGHYFNTFYKEYLPFELTNAQKRVVREIRIDMGSGRQMNRLLQGDVGSGKTL 304

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           V L++M  A++   QA +MAP  ILA QHY  I  + ++  + V ++TG+  +  R K L
Sbjct: 305 VGLLSMLLAIDNHCQACMMAPTEILATQHYATIMGFLKDMDVKVALLTGSTKKKERDKIL 364

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427
             IA G+  I+IGTHAL ++++ +  L L I+DEQHRFGV+QR +L T+ A  PHVL+MT
Sbjct: 365 PAIASGEIQIVIGTHALIEETVVFSSLGLAIIDEQHRFGVEQRSRLWTKNAIVPHVLVMT 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S I E P GRKPI+T+    N+  ++ E L+  + +G++ Y 
Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTLHRYDNKKAQLYEFLRKEIQKGRQVYV 484

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P IE  ++ +++ +   F +  E F    + ++HGRM   DK++ M  F +G  ++L+
Sbjct: 485 VYPLIEGNEKLDYKDLEAGFETFKEVFPEYKVCMVHGRMKAADKDTEMQKFISGEAQILM 544

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S CIL+    LS ++  
Sbjct: 545 ATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILVSSYKLSNDTRK 604

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665
           RL ++ N+ +GF IAE DL+ R  G++ G +QSG    L IA       +L+ AR  A+ 
Sbjct: 605 RLEIMVNSTNGFEIAEADLRLRGHGDLEGTRQSGEGIDLKIADLAADGQILQYARDIAQG 664

Query: 666 ILTQDPDLTS 675
           +L +DP+L S
Sbjct: 665 VLDEDPELLS 674


>gi|167769311|ref|ZP_02441364.1| hypothetical protein ANACOL_00636 [Anaerotruncus colihominis DSM
           17241]
 gi|167668279|gb|EDS12409.1| hypothetical protein ANACOL_00636 [Anaerotruncus colihominis DSM
           17241]
          Length = 680

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 241/680 (35%), Positives = 362/680 (53%), Gaps = 33/680 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++T RGVG++ +  L+++            DLL ++P  +ID     ++     +++  +
Sbjct: 9   VATLRGVGEQRAQALARL------GIVTVEDLLLHYPRGYIDLTAPCEVMSAPLDQVCAV 62

Query: 73  TG-YISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRK--TEMLK---NVFFEGRKITV 125
               I +    +L+   R YK++  D +G + L FF  K   + LK      F GR   +
Sbjct: 63  RATVIKKGRETRLRGGLRLYKVIAADDSGVLELTFFNTKFTVDALKIDEPYLFYGR---M 119

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            G + + + R   V+P       +  + P I AVY L  GL+   F  ++ +AL+R P L
Sbjct: 120 EGTLLRREMRAPAVYP-------ERADQPFI-AVYPLTEGLTQKAFANLVEQALARAPRL 171

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PE I + +        I +A   IH P  A   E    A+ RL ++EL      + L+R 
Sbjct: 172 PERIPETVRAGNGLEGIGQAVRDIHRPSDAAALER---AKRRLIFEELFMLAAGVGLLRT 228

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + + E   P+      A      +PF  T +Q  AI D+  D+ +     R++QGDVGSG
Sbjct: 229 RARTEQAAPMQPHSLKA--FYTALPFELTGAQRRAIADLTDDLQKPTPANRLVQGDVGSG 286

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA      A  +G Q+ +MAP  +LA+QHYE +K   +   +   ++ G++  A +R
Sbjct: 287 KTMVAAAGAYFAFLSGAQSAMMAPTELLARQHYEGLKPLCEKLGMKTALLIGSLTPAQKR 346

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
                +  G+  +  GTHAL    + +  L LVI DEQHRFGV QR KL +K    H L+
Sbjct: 347 AVYNALETGEIDLCFGTHALISQGVHFMNLGLVITDEQHRFGVAQRAKLRRKGRCAHTLV 406

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPRTL L   G++DIS I E P GR P+ T  I   + +     ++  L  G +A
Sbjct: 407 MSATPIPRTLALMIYGELDISVIDELPPGRSPVLTYKISSGKRERAFGFIRKHLDRGLQA 466

Query: 486 YWICPQIEEKKES-NFRSVVERFNSLHE-HFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           Y +CP++E  +E     +  E    L    FT  ++ ++HGRM   +KE VM+SF+ G  
Sbjct: 467 YIVCPRVEAGEEDMGLHAATEYMMDLSSGAFTGYTVGLLHGRMKASEKERVMESFQRGEI 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           +LL++TTV+EVG+DV +A I++IENAE FGL+QLHQLRGRVGRG+E S CILL     S+
Sbjct: 527 QLLVSTTVVEVGVDVPNAVIMMIENAERFGLSQLHQLRGRVGRGKEQSYCILLSD-SRSE 585

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL ++  T DGF IAE DLK R  G  LG +Q G+P+  IA        +  AR+ 
Sbjct: 586 ETVERLKIMCKTSDGFAIAEYDLKTRGPGNFLGQEQHGLPRLRIADLVTDADTVTQARES 645

Query: 663 AKHILTQDPDLTSVRGQSIR 682
           A++IL  DP L +    ++R
Sbjct: 646 AEYILAADPTLCAPEHAALR 665


>gi|293556809|ref|ZP_06675370.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1039]
 gi|291600893|gb|EFF31184.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1039]
          Length = 678

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/665 (35%), Positives = 379/665 (56%), Gaps = 27/665 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           ++  VT+ G +      + F  +K R  ++++       ++  FF +    LK       
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILSE 109

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +I V GK      R  +     +   + D   P+     S+     VDL KK   E  + 
Sbjct: 110 EIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT- 166

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
             ++ E +  +L++K      A A   +H P   KD E    A+ R+ ++E    Q+ L 
Sbjct: 167 --LIEENLPNNLVEKYRLLDRASAVRSMHFP---KDHEENHQAKRRVVFEEFFLFQMRLQ 221

Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++K  K E  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQG
Sbjct: 222 GLKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQG 281

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ + ++TG+  
Sbjct: 282 DVGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTIALLTGSTK 341

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+ LE++  G+ +++IGTHAL QD +++  L LVI DEQHRFGV QR  L +K   
Sbjct: 342 AKERRELLEKLEQGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWR 401

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  K  L+
Sbjct: 402 PDVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTKKELA 461

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538
            G + Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK
Sbjct: 462 RGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFK 521

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +   ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P
Sbjct: 522 DNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANP 581

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F IA      ++LE+
Sbjct: 582 K-NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEV 640

Query: 659 ARKDA 663
           AR++A
Sbjct: 641 AREEA 645


>gi|296315116|ref|ZP_06865057.1| ATP-dependent DNA helicase RecG [Neisseria polysaccharea ATCC
           43768]
 gi|296838029|gb|EFH21967.1| ATP-dependent DNA helicase RecG [Neisseria polysaccharea ATCC
           43768]
          Length = 680

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 226/600 (37%), Positives = 339/600 (56%), Gaps = 7/600 (1%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + D +G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADDSGSVLFLRFIHFYAGHQKQTAAGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP         +   L   VY    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAEGGGLAESLT-PVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGSAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +   G + Q + R +PF+ T +QE+ + ++  DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LRGNGVLTQALRRALPFALTDAQENVLAEVQTDMAQTHPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G
Sbjct: 303 LTAIESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADG 362

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRT
Sbjct: 363 SVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRT 422

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I + P GR PIKT ++   R  EV   +     +G++AYW+CP IEE
Sbjct: 423 LAMSFFADLDVSVIDKLPPGRTPIKTRLVNNVRRTEVEGFVLNTCRKGRQAYWVCPLIEE 482

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEV
Sbjct: 483 SETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEV 542

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+  
Sbjct: 543 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYE 602

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 603 HTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEI 662


>gi|167630218|ref|YP_001680717.1| ATP-dependent DNA helicase recg, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592958|gb|ABZ84706.1| ATP-dependent DNA helicase recg, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 828

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 241/667 (36%), Positives = 374/667 (56%), Gaps = 21/667 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            RGVG + +  L K+   G A      DLLF+ P  +IDR     I++I     VT+ G 
Sbjct: 156 LRGVGPQRAALLKKL---GIAT---VRDLLFHLPHRYIDRSRLMSIAQIRYPGDVTVAGV 209

Query: 76  ISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
           I  +   Q   RR   ++   ++DG+G + ++ F RK   L   +  G  + V+GK++  
Sbjct: 210 IRAYQ--QWNPRRGLAVIKGQIDDGSGLLPIVLFNRK--HLPAKYPPGTAVVVSGKVEFR 265

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEK 191
             +  ++           ++   I  VY    GL+    + +  + L +  P L + +  
Sbjct: 266 YGKAELLVEEMENQAEAGLHTNRIIPVYPATEGLNQRFLRGLYGQVLDKYAPSLIDPLPT 325

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
            +  K   PS+ EA   IH P   +  E     R ++A++E+     A   +R+Q +  I
Sbjct: 326 PVAAKVKLPSLVEAVRQIHFP---ESLEAAEAGRRKVAFNEIFLLSTAWRYVRRQKQGRI 382

Query: 252 -GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            G+      +  Q+    +P++ T +Q+  I +I  DM     M R+LQGDVG+GKT+VA
Sbjct: 383 EGVRHQPAREELQRFWSLLPYTLTGAQQRVISEIEADMEADRPMHRLLQGDVGAGKTVVA 442

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
             A+  AV +G QA +MAP  +LA+QH    +    N  + V  +TG+M +  R + L  
Sbjct: 443 ASAVVKAVASGYQAALMAPTEVLAEQHAINWQSLLANMAMPVAHLTGSMGRRRREEVLRG 502

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           +A G   +++GTHAL Q  + + +L LVI+DEQHRFGV+QR  L  K+ A  +L+MTATP
Sbjct: 503 LADGSIPVVVGTHALLQKEVTFRRLGLVIIDEQHRFGVRQRAVLKGKSEAADLLVMTATP 562

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +T  GD+D+S + E+P GR+ +KT  +  +    +   ++  ++ G +AY +CP
Sbjct: 563 IPRTLAMTVYGDLDVSILDERPPGRRQVKTHHVGSDAWPRIYRLMRREVAAGHQAYVVCP 622

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            IE+ +ES+  +V ER+ +L  +    +A  I+HGR+   +K +VM+ F  G   +L+AT
Sbjct: 623 AIEDSEESDLAAVEERYATLSRNVFPDLAVGILHGRLKKEEKAAVMERFYRGQLHILVAT 682

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV  A+I++IE AE FGLAQLHQLRGRVGRG+  S CIL+    LS+    R+
Sbjct: 683 TVIEVGVDVPAATIMVIEGAERFGLAQLHQLRGRVGRGDAQSYCILVAD-KLSEEGRQRM 741

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
             ++ ++DGF +AEEDLK R  GE LG +QSG+P F  A       L+E+A++ A+H   
Sbjct: 742 RAMEASDDGFRLAEEDLKLRGPGEFLGTRQSGIPVFKAADLVRDADLMEMAKEWARHWSE 801

Query: 669 QDPDLTS 675
           QDP+L +
Sbjct: 802 QDPELEA 808


>gi|227824767|ref|ZP_03989599.1| ATP-dependent DNA helicase recG [Acidaminococcus sp. D21]
 gi|226905266|gb|EEH91184.1| ATP-dependent DNA helicase recG [Acidaminococcus sp. D21]
          Length = 688

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 247/681 (36%), Positives = 378/681 (55%), Gaps = 45/681 (6%)

Query: 12  PLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHP--SSFIDRHYRPKISEIS-E 66
           P+S+ +G+G K ++      I+  G        DLL + P    ++D  +   I E++ +
Sbjct: 7   PVSSLKGIGPKKAIEFEGLGIVTIG--------DLLNHFPRQGCYLDYSHVKTIRELTLD 58

Query: 67  ERIVTITGYISQHSSFQLQKRRPYK------ILLNDGTGEITLLFFYRKTEMLKNVFFE- 119
             +    G I++     + KRR  +      ++++DGT    +  F  +   ++  + E 
Sbjct: 59  GSMQLFRGQIAR-----IIKRRSARNMRYASVVVSDGTAFAEIFLFGAQVYAVR--YLEN 111

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G  + V GK+   +    +          +    P I   Y+L   L+    +  + +AL
Sbjct: 112 GDDVLVIGKVGPGRTAKAVTQAVISKVKDEHPEAPGILPTYALSGSLTQKNVRSAVRQAL 171

Query: 180 ----SRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
                 LP  LP+WI    ++KK F S  EA   IH P   +  E    AR R  ++EL 
Sbjct: 172 LLAKHHLPECLPDWI----MRKKGFLSRYEALEAIHFPPSLEKME---EARRRFIFEELF 224

Query: 235 AGQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q  LL  R   KK  +GI +   G + Q +L ++ F+ T+SQ+ A ++I  DM     
Sbjct: 225 FIQCGLLHHRANIKKRSLGIKMGHCGPLWQSVLDHLGFTLTESQKKAWQEINDDMESPEP 284

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT VA++A+A A E G Q  +MAP  ILA+QHY+ ++K  +   I   
Sbjct: 285 MNRLLQGDVGSGKTAVAMLALAKAAENGYQGCLMAPTEILAEQHYKEMQKVLEPLGIHTA 344

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG++ QA RR+ LE +A G    ++GT+AL QD++ ++ L L I DEQHRFGV+QR +
Sbjct: 345 LLTGSLGQAARREVLEGLADGTIKAVVGTYALIQDAVTFHSLALAITDEQHRFGVEQRSR 404

Query: 414 LTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L+ K++  PHVL+MTATPIPRTL LT  GD+D+S +   P GRKPIKT+     +  +V 
Sbjct: 405 LSGKSSYTPHVLVMTATPIPRTLALTVYGDLDVSLMKGLPPGRKPIKTLCYTDEKRADVY 464

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDK 530
             L   + EG +AY + P IE     + +S  + +  L + F   I   ++HGR+   +K
Sbjct: 465 AGLIHQVKEGHQAYIVAPLIEGSDTVDAKSATDLYEELTQTFLKGIPCGLLHGRLKAEEK 524

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           ++VM  F +G  K+LIATTVIEVG++V +A+++IIE A+ FGLAQ+HQLRGRVGRG   S
Sbjct: 525 DAVMADFVSGKTKVLIATTVIEVGVNVPNATLMIIEGADRFGLAQMHQLRGRVGRGSSQS 584

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+LL        +  RL ++++  DGFL+AE+D++ R  G++ G++Q G+P   IA   
Sbjct: 585 YCVLLTGSN-QPQTLERLQIMRSCSDGFLLAEKDMELRGAGQLFGVRQHGLPDLYIADIL 643

Query: 651 LHDSLLEIARKDAKHILTQDP 671
                L  AR+ AK I+  DP
Sbjct: 644 RDTDTLVEAREYAKRIMA-DP 663


>gi|149173513|ref|ZP_01852143.1| ATP-dependent DNA helicase RecG [Planctomyces maris DSM 8797]
 gi|148847695|gb|EDL62028.1| ATP-dependent DNA helicase RecG [Planctomyces maris DSM 8797]
          Length = 691

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/647 (34%), Positives = 368/647 (56%), Gaps = 30/647 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           +PL  P+    GVG      L K+            DLL++ P S +D      ++E+ E
Sbjct: 4   SPLETPVQFLNGVGPDRGELLGKL------GIQTVEDLLWHLPRSVLDLTDVRPVNELEE 57

Query: 67  ERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           ++  ++ G +    +  + + R    ILL+ GTG +   +F +   + +  FF+G+ +  
Sbjct: 58  DQPASVCGKVVDLDARTISRGRTITAILLDCGTGFLKGTWFNQPWVIKR--FFQGQLLMF 115

Query: 126 TGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183
           +GK K+   +  + HP + +     D    LI   YSL  G+ +   ++ +  A+     
Sbjct: 116 SGKPKRRSGKWEISHPQFQVLEEDLDDPQGLILPRYSLTEGIKMYQMRRFVRAAVEEYAQ 175

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           ++P+++ +   +  S   +++A   +H PR  +++        R+ YD+LL  Q+AL L 
Sbjct: 176 LIPDYLPESFREAHSLIPLSQAVIQMHKPRTMEEYH---AGVHRVIYDDLLEFQLALALR 232

Query: 244 RKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           R+ +      P + V  K+  +I R  P+  T+ Q  AI++I  D++    M R+LQ DV
Sbjct: 233 RRLWTCVDNAPLVKVTAKVDARIRRLFPYDFTEGQNQAIEEIKTDLASGRAMHRMLQADV 292

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT +A+ AM A +  G QAV+MAP  +LA QH+E I K  +++++   ++TG++  +
Sbjct: 293 GAGKTAIAIYAMLAMIAGGNQAVLMAPTELLAVQHWETINKILKHSRVKHCLLTGSLSPS 352

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R+  LE+IA G+  +I+GT A+ Q  ++Y+ L LVI+DEQH+FGV QR   +     PH
Sbjct: 353 ERKATLEQIASGEQQLIVGTQAVVQKDVRYHNLGLVIIDEQHKFGVMQRAHFSSDQNTPH 412

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER------LK 476
           +L+MTATPIPR+L LT  G++DIS  TE P GR+P+ T     +R+    +R      L+
Sbjct: 413 MLVMTATPIPRSLCLTQFGELDISVNTELPPGRQPVMT-----SRVSTTPQRKKAWDFLR 467

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVER-FNSLH--EHFTSSIAIIHGRMSDIDKESV 533
             ++ G++AY +CP+I+ + E N RS  E  +  L   E  T+SI ++HG+M   ++  +
Sbjct: 468 TQIAAGRQAYIVCPRIDSEDEQNIRSSAEEVYRKLQKSELSTASIGLVHGQMDREERAEI 527

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F  GT ++L++TTV+EVG+DV +A++++I  A+ FGL+QLHQLRGRV RG    +C 
Sbjct: 528 MRQFHQGTIQVLVSTTVVEVGVDVPNATLMVILQADRFGLSQLHQLRGRVSRGLHRGNCF 587

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           L  +   S+++  RLSV++ T DGF IAE D + R  G+I G +Q G
Sbjct: 588 LFSYTE-SEDALNRLSVMEQTTDGFEIAEADFQARGPGDIFGTRQHG 633


>gi|293605612|ref|ZP_06687992.1| DNA helicase RecG [Achromobacter piechaudii ATCC 43553]
 gi|292815992|gb|EFF75093.1| DNA helicase RecG [Achromobacter piechaudii ATCC 43553]
          Length = 696

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 249/672 (37%), Positives = 362/672 (53%), Gaps = 28/672 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           G GK  +    K+ N G      F+    + P  + D      IS +       + G I+
Sbjct: 17  GAGKPMTDTERKLRNLGLVLPEDFV---LHLPLRYEDETRVVPISALRPGYAGQVEGEIT 73

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITL--LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           + S  Q + RR     L D TGEI L  L FY   +   +V   G+++   G+++     
Sbjct: 74  K-SEVQYRPRRQLTATLADETGEIQLRWLNFYPSQQKQISV---GKRLRARGEVRSNLFG 129

Query: 136 IIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194
             MVHP      + D   P  +  VY    GL     ++ I +AL R   L + +  + L
Sbjct: 130 RQMVHPRM---TNADAPLPTALTPVYPTTEGLPQLTLRRAIAQALDRAD-LSDTLPPEAL 185

Query: 195 QKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQ--FK 248
            +   P    A   +H P + +      +   PA  R+ +DELLA Q++L   R     K
Sbjct: 186 ARYDLPPFEPAIRALHTPAQGESEQALLDRVHPAWRRIKFDELLAQQLSLAAARAARRIK 245

Query: 249 KEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   +P+ N  G +  K+  N+PF  T +QE  +++I  D+++   M R+LQGDVGSGKT
Sbjct: 246 EAESLPVRNEPGGLVAKLYANLPFKLTAAQERVVQEISADLAKPYPMHRLLQGDVGSGKT 305

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IA A A+  G Q  +MAP  ILA+QH+  +  + Q   I V  ++G++    RR+A
Sbjct: 306 VVAAIAAAQAIAGGAQVALMAPTEILAEQHFRKLVSWLQPLGINVAWLSGSLTAKARREA 365

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------P 421
               A G   +++GT AL QD +++++L L IVDEQHRFGV QRL LT+K         P
Sbjct: 366 AAAAADGSVQLVVGTQALIQDHVEFHRLGLSIVDEQHRFGVGQRLALTKKGETVRGRIVP 425

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L M+ATPIPRTL +T   D+D+S I E P GR P+ T ++   R +EVI  +      
Sbjct: 426 HQLNMSATPIPRTLAMTFFADLDVSVIDELPPGRTPVLTKLVSDARREEVIAHVAQAARG 485

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE +    ++ V+ +  +        I ++HGR+   +K +VM +F+ G
Sbjct: 486 GQQVYWVCPLVEESEALELQTAVDTYEGMRTDLPDLRIGLVHGRLPQAEKAAVMQAFREG 545

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PL
Sbjct: 546 EVDLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCVLLYQTPL 605

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+ +  RL  +  T DGF IA  DL+QR  GE LG +QSGM     A  E   ++ E AR
Sbjct: 606 SQVARERLRAMFETSDGFEIARRDLEQRGPGEFLGTRQSGMALLRFADLETDAAIAEDAR 665

Query: 661 KDAKHILTQDPD 672
             A  +  + PD
Sbjct: 666 DAAVWLRAEYPD 677


>gi|50914858|ref|YP_060830.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS10394]
 gi|50903932|gb|AAT87647.1| ATP-dependent DNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 671

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 247/672 (36%), Positives = 378/672 (56%), Gaps = 32/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D   +     +  E+
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 57  AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL---SRLP 183
           GK    K+ I  +    +    +D   P    VY +  G+S     K I  A    + L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEIDAHLE 166

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            L E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L ++
Sbjct: 167 -LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVL 222

Query: 244 RKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           + + + E  G+PI       +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDV
Sbjct: 223 KAENRSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDV 282

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++   +  I   I+T  M  A
Sbjct: 283 GSGKTVIASLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAA 340

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P 
Sbjct: 341 VKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD 400

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L + 
Sbjct: 401 VLMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKD 460

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540
            + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+ 
Sbjct: 461 AQVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDK 520

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  
Sbjct: 521 KSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK- 579

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           + +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR
Sbjct: 580 TDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEAR 639

Query: 661 KDAKHILTQDPD 672
           K +  I++ DP+
Sbjct: 640 KVSAAIVS-DPN 650


>gi|146320180|ref|YP_001199891.1| RecG-like helicase [Streptococcus suis 98HAH33]
 gi|145690986|gb|ABP91491.1| RecG-like helicase [Streptococcus suis 98HAH33]
          Length = 635

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 232/640 (36%), Positives = 366/640 (57%), Gaps = 25/640 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           LS   G+G K +    KI +  N N     DLL Y+P  + D   +  I ++ +     +
Sbjct: 8   LSVLPGIGPKSAEKFLKI-SIQNIN-----DLLTYYPFRYEDFESK-SIYDLQDGEKAVV 60

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +   ++ Q    +  ++  +   GE+ L   +     L +    G+ I V GK  K 
Sbjct: 61  VGEVVSPANVQYYGYKRNRLRFSMKQGEVVLAVSFFNQPYLADKIVLGQDIAVWGKWDKA 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLPEWIE 190
           K  +  +    I     D     ++ VY +  G+S     K I  A+ +  L +L E + 
Sbjct: 121 KASLTGMK---ILAQVSDE----LQPVYHVAQGISQVNLVKAIKTAIDQGYLHLLEENLP 173

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             L ++    +  EA   +H P   +++     A  R+ ++EL   Q+ L +++   +  
Sbjct: 174 SVLRERYRLMNRREAVFAMHFPTNLEEYR---QALRRMKFEELFYFQLQLQMLKANNRDI 230

Query: 251 I-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           + G+ I  +       +R +PF  T +Q  A+ +IL DM     M R+LQGDVGSGKT+V
Sbjct: 231 LNGLKIAYDADRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMNRLLQGDVGSGKTVV 290

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A +AM AAV AG QA IM P  ILA+QH+E +++     ++ + ++TG M  A RR ALE
Sbjct: 291 AGLAMFAAVTAGMQAAIMVPTEILAEQHFESLRQLF--PELSIALLTGGMKAAERRTALE 348

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            I+ GQ  II+GTHAL Q+S+ Y+KL LV+ DEQHRFGV+QR    +K   P VL+MTAT
Sbjct: 349 AISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREKGDNPDVLMMTAT 408

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL +T+ GD+D+S I + PAGRKPI T  +   ++  V++ L+  L  G + Y+I 
Sbjct: 409 PIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWLERELEVGAQVYFIS 468

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIA 547
           P IEE +  + ++ V+  + L  HF   + +  +HG+M + +K+++M +FK     +L++
Sbjct: 469 PLIEESEALDLKNAVDLQSDLQAHFGEQVTVDLLHGKMKNDEKDAIMQAFKERKTNILVS 528

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++   R
Sbjct: 529 TTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK-TESGKER 587

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           + ++  T DGF++AE DLK R  GEI G +QSG+P+F +A
Sbjct: 588 MKIMTETTDGFILAEADLKMRGSGEIFGTRQSGLPEFQVA 627


>gi|220929301|ref|YP_002506210.1| ATP-dependent DNA helicase RecG [Clostridium cellulolyticum H10]
 gi|219999629|gb|ACL76230.1| ATP-dependent DNA helicase RecG [Clostridium cellulolyticum H10]
          Length = 689

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 238/665 (35%), Positives = 378/665 (56%), Gaps = 22/665 (3%)

Query: 17  RGVGK-KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
           +GVG+ + SLF    IN          DL+ Y+P  + DR     I+++      +  G 
Sbjct: 18  KGVGELRESLFKKLGIN-------NIFDLITYYPRDYEDRSSIKNIADLQNGVPCSFEGT 70

Query: 76  ISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
           I  + S    ++     K+ + D TG+IT ++F +    +KN    G      GK  +  
Sbjct: 71  IVSNVSVTRPRKGLTLSKVSIEDSTGKITAIWFNQP--YVKNSLAIGENYIFFGKADRKL 128

Query: 134 NRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPEWIE 190
           N++ +V+P +   + +D+   L I  VYS    L  +  + ++ EA+  +    L + I 
Sbjct: 129 NKLQIVNPVFEKSSLKDMKKSLKILPVYSSTKDLGQNTIRTVVNEAIKGIEDFELEDMIP 188

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             + +  +      A   IH P  A+D E    AR RLA++EL   Q+ LL   K     
Sbjct: 189 DAVREIHNLADKTYAIKQIHFPASAQDMER---ARFRLAFEELFMLQLGLL-SYKSLATC 244

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             + I       +  ++++PF  T +Q+    ++ +DM   + M R++QGDVGSGKT++A
Sbjct: 245 TRVGIKYTHIEMESFVKSLPFQLTNAQKKVFMEVEKDMESSHIMNRLVQGDVGSGKTVIA 304

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           ++A+  AV+ G Q  +M P  ILA+QHY+ I+    +  I V++++ ++ +  ++  +E 
Sbjct: 305 VLALFKAVKCGYQGALMVPTEILAEQHYKSIRSLFDSFGISVQLLSSSLTKKQKQLIVEE 364

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           +  G+  ++IGTHAL +D IQ+ +L LVI DEQHRFGV+QR  LT+K   P VL+MTATP
Sbjct: 365 LKEGKTDVVIGTHALIEDYIQFKQLGLVITDEQHRFGVRQRTILTEKGQNPDVLVMTATP 424

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL L   GD+DIS I E P GRKPIKT  +  +  + + + ++  + EG++ Y +CP
Sbjct: 425 IPRTLALILYGDLDISIIDELPPGRKPIKTYSVNESMRERINKFVRDKVKEGRQIYIVCP 484

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +EE +E   +S V   + + +   S  ++ IIHG+M   +KE +M  F +G   +L++T
Sbjct: 485 LVEESEEIEAKSAVVTADDISKSVFSDLNVGIIHGKMKSSEKEDIMKKFVSGEINILVST 544

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           T+IEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG+E S CI L++   SK S  R+
Sbjct: 545 TIIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGDEQSFCI-LFNQSNSKVSRERM 603

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
             +  + DGF+I+E+DL+ R  GE  G +Q G+P+  IA       +L++A+  A  I+ 
Sbjct: 604 KTMTQSTDGFVISEKDLEIRGPGEFFGTRQHGLPELKIANLYKDMDILKLAQNSAIEIIE 663

Query: 669 QDPDL 673
            DP L
Sbjct: 664 ADPGL 668


>gi|262282056|ref|ZP_06059825.1| ATP-dependent DNA helicase RecG [Streptococcus sp. 2_1_36FAA]
 gi|262262510|gb|EEY81207.1| ATP-dependent DNA helicase RecG [Streptococcus sp. 2_1_36FAA]
          Length = 671

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 243/664 (36%), Positives = 383/664 (57%), Gaps = 25/664 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PLS   GVG K +   +K+       ET   DLL Y P  + D   + ++ ++ +  
Sbjct: 3   LHQPLSVLPGVGPKSAEKFAKL-----GIET-LQDLLLYFPFRYEDFQSK-QVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              I G ++  ++ Q    +  ++  +   GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVIFGIVATPANVQYYGFKRNRLRFSIKQGEVILAVNFFNQPYLADKVEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             K K  +  +    +    +D     ++ VY +  G+S     K+I  A  + L +L  
Sbjct: 116 WDKAKASLTGMK---LLAQVKDD----LQPVYRVAQGISQTSLIKLIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S AEA   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQVLLERYQLLSRAEAVRAMHFP---KDLAEYKQALRRVKFEELFYFQMQLQVLKME 225

Query: 247 FKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K    G+ ++ + +  Q+    +PF  T +QE A+ +IL D+     M R+LQGDVGSG
Sbjct: 226 TKDVSNGLVLDWQEEQLQEKKSQLPFPLTGAQERALAEILSDLKSPAHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH+E +     + ++   ++TG+M  A R+
Sbjct: 286 KTVVAGLAMYAVHTAGYQSALMVPTEILAEQHFESLSHLFPDLKLA--LLTGSMKAAERK 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I  GQ  ++IGTHAL QD +QY+ L LVIVDEQHRFGV QR  L +K   P VL+
Sbjct: 344 ETLLAIELGQVDMVIGTHALIQDGVQYHHLGLVIVDEQHRFGVAQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ +K  L +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWIKKELVKGAQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ ++    L  +F   + ++++HG+M   +KE++M +FKN    
Sbjct: 464 YFISPLIEESEALDLKNAIDLEEELQAYFGVDARVSLLHGKMKSDEKEAIMQAFKNKEVD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG++ S  IL+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATIMVIMDADRFGLSQLHQLRGRVGRGDKQSYAILVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHIL 667
             I+
Sbjct: 643 SQIV 646


>gi|225012820|ref|ZP_03703254.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium MS024-2A]
 gi|225003094|gb|EEG41070.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium MS024-2A]
          Length = 699

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/709 (35%), Positives = 397/709 (55%), Gaps = 28/709 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI- 64
           ++P+   ++  +GVG + +  L + +N        F DLL + P+ +IDR     I E+ 
Sbjct: 1   MDPMQTEITYLKGVGPERARLLKEELNIKT-----FQDLLHFFPNRYIDRSRFHPIKELP 55

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRK 122
           +    V I G I+  S   +Q++R  +++ N  D TG + L++F R  + L+      ++
Sbjct: 56  TTNAEVQIKGIIT--SIDYIQQKRGKRMVANFQDETGSMQLVWF-RGYQWLRESIRINQQ 112

Query: 123 ITVTGKIKKLKNRIIMVHPHY----IFHNSQDVNF-PLIEAVYSL-PTGLSVDLFKKIIV 176
             + G+I   K +  M HP      +F       F P+  +   L   G+S  + +K++ 
Sbjct: 113 YVIFGRINWFKGQASMPHPELELESVFQQGVKAAFYPIYPSSEKLINKGVSQRVIQKLVA 172

Query: 177 EALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
             L  +     E + + LL    F S  EA + +H P         S A+ RL ++E   
Sbjct: 173 TLLQLKEAEFSETLPQYLLNHFKFISKKEALHQVHYPSTQN---LLSRAQMRLKFEEFFY 229

Query: 236 GQIALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNR 293
            Q+ L+L  +Q K++I G      G + +    N +PF+ T++Q+  +K+I  D+    +
Sbjct: 230 MQLQLILKNRQRKQKIKGYVFPEVGSVFKDFFDNHLPFTLTEAQKRVVKEIRNDLGTGRQ 289

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VAL+AM  A++ G Q+ ++AP  ILAQQHY+ +    + T +   
Sbjct: 290 MNRLLQGDVGSGKTIVALLAMLIAIDNGFQSTLVAPTEILAQQHYQSLDALLEGTGVQCA 349

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+  +  R    E +  G+  I++GTHA+F++ +Q+  L + I+DEQHRFGV QR K
Sbjct: 350 LLTGSSTKKERVVLHEALESGELSILVGTHAVFEEKVQFQNLGIAIIDEQHRFGVAQRAK 409

Query: 414 LTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L QK    PHVL+MTATPIPRTL ++  GD+DIS I   P GRKPIKT+    N    V 
Sbjct: 410 LWQKNDIPPHVLVMTATPIPRTLAMSIYGDLDISIIDTLPPGRKPIKTLHRFDNNRLAVF 469

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDID 529
             +K  ++ G++ Y + P I+E +  +++ +++ + S+   F    + I+I+HG+M   D
Sbjct: 470 AFVKEQINLGRQIYIVYPLIQESESLDYKDLMDGYESISRSFPPPKNQISIVHGKMKPED 529

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K   M+ F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E 
Sbjct: 530 KAYEMERFVRGKTQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGSEQ 589

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+    LS+   TRL  +  + DGF IAE DL+ R  G ++G +QSG+ +  IA  
Sbjct: 590 SYCVLMSGSKLSEEGKTRLQTMVKSNDGFEIAEVDLRLRGPGNLMGTQQSGVLQLKIADV 649

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSI-RILLYLYQYNEAFQFI 697
                LL+ AR  A+ I+ +D    +   Q I R L  L   +  + FI
Sbjct: 650 IKDTELLKAARDTAQQIIKKDAAFDNREHQVIKRTLSALKHDSNIWNFI 698


>gi|322392696|ref|ZP_08066156.1| DNA helicase RecG [Streptococcus peroris ATCC 700780]
 gi|321144688|gb|EFX40089.1| DNA helicase RecG [Streptococcus peroris ATCC 700780]
          Length = 671

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 239/663 (36%), Positives = 373/663 (56%), Gaps = 25/663 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGVSQTGLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K      ++A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMPRSQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K +  G+ +N   +    +   +PF  T++QE+++ +IL DM   + M R+LQGDVGSG
Sbjct: 226 NKVQGSGLVLNWSQEKLTAVKEKLPFDLTQAQENSLHEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++    + ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMYAAVTAGYQAALMVPTEILAEQHFESLESLFPDLKLA--LLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
             LE IA G   +IIGTHAL QD + Y KL L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 TVLETIAKGDVDVIIGTHALIQDGVDYAKLGLIIIDEQHRFGVGQRRILREKGENPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + P GRKPI T  +   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSVIDQMPTGRKPIVTRWVKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAKVALLHGKMKSDEKDQIMQEFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G KQSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTKQSGLPEFHVADIIEDFPILEEARKVA 642

Query: 664 KHI 666
            +I
Sbjct: 643 SYI 645


>gi|138894706|ref|YP_001125159.1| ATP-dependent DNA helicase RecG [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266219|gb|ABO66414.1| ATP-dependent DNA helicase RecG [Geobacillus thermodenitrificans
           NG80-2]
          Length = 678

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 240/675 (35%), Positives = 389/675 (57%), Gaps = 41/675 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +  P++  +G+G++ +  L+ +        T   +LL Y P  + D + +  ++ +  E 
Sbjct: 1   MLQPVTAVKGIGEETAAALADL------GITTVGELLNYAPYRY-DDYEQKDLAAVRHEE 53

Query: 69  IVTITGYISQHS----SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            VT+ G +  HS    ++  +K+      L  G   IT++ F R    LK        +T
Sbjct: 54  KVTVEGKV--HSAPLLTYYGKKKSRLSFRLLTGRYLITVVCFNRP--YLKGKITLNETVT 109

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL------IEAVYSLPTGLSVDLFKKIIVEA 178
           V GK  + +  I          N+ ++ F        IE VYS+ + L+V   +++I  A
Sbjct: 110 VIGKWDRHRQTI----------NAYELRFGAAPEATGIEPVYSVRSPLTVKTMRRLIKAA 159

Query: 179 LSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
            ++  + +P+ +   L +        EA   +H PR  ++      AR RL Y+E L  Q
Sbjct: 160 FAQFGMHIPDLLPPALRRAYRLIDKQEAVRALHFPRSREELHQ---ARRRLVYEEFLLYQ 216

Query: 238 IALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + +  +RK  + E  GI  +   +     L  +PFS T +Q   I++IL DM    +M R
Sbjct: 217 LKMQALRKVMRDERRGIIHSFPEEQLASFLSGLPFSLTNAQRRVIREILDDMRAPRQMNR 276

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VA +A+ AAV +G Q  +M P  ILA+QH   + +   +T + VE++T
Sbjct: 277 LLQGDVGSGKTVVAAVALYAAVLSGFQGALMVPTEILAEQHVRSLAELFADTGVTVELLT 336

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
            ++    R++ L ++  G   I+IGTHAL Q+ +Q+ +L LVI DEQHRFGV+QR  L +
Sbjct: 337 SSVKGKRRKELLAKLEDGTVDIVIGTHALIQEGVQFRQLGLVITDEQHRFGVEQRRVLRE 396

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K  AP VL+MTATPIPRTL +T+ GD+D+S + E PAGRK ++T  +  N+   V++ ++
Sbjct: 397 KGHAPDVLMMTATPIPRTLAITAFGDMDVSVLDEMPAGRKKVETYWVKHNQFARVLDFIE 456

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVM 534
             L  G +AY ICP IEE ++ + ++ ++  + L  ++     + ++HGR+S  +KE+VM
Sbjct: 457 KELRRGHQAYVICPLIEESEKLDVQNAIDVHSQLVYYYRGKYEVGLMHGRLSADEKEAVM 516

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F      +L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+  S CIL
Sbjct: 517 RAFSENRIHVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDAQSYCIL 576

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD- 653
           +  P  S+    R+ ++  T DGF++AE+DL+ R  G+  G KQSG+P+F    P +HD 
Sbjct: 577 IADPK-SEIGKERMHIMTETTDGFVLAEKDLELRGPGDFFGTKQSGLPEFQFGDP-VHDY 634

Query: 654 SLLEIARKDAKHILT 668
            +LE+AR+DA  +++
Sbjct: 635 RILEVARRDAAKLVS 649


>gi|257887985|ref|ZP_05667638.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,141,733]
 gi|257824039|gb|EEV50971.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,141,733]
          Length = 678

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/665 (35%), Positives = 380/665 (57%), Gaps = 27/665 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           ++  VT+ G +      + F  +K R  ++++       ++  FF +    LK       
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILSE 109

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +I V GK      R  +     +   + D   P+     S+     VDL KK   E  + 
Sbjct: 110 EIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT- 166

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
             ++ E + K+L++K      A A   +H P   K+ E    A+ R+ ++E    Q+ L 
Sbjct: 167 --LIEENLPKNLVEKYRLLDRASAVRSMHFP---KNHEENHQAKRRVVFEEFFLFQMRLQ 221

Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++K  K E  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQG
Sbjct: 222 GLKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQG 281

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ V ++TG+  
Sbjct: 282 DVGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTVALLTGSTK 341

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+ LE++  G+ +++IGTHAL QD +++  L LVI DEQHRFGV QR  L +K   
Sbjct: 342 TKERRELLEKLERGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWR 401

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  +  L+
Sbjct: 402 PDVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKELA 461

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538
            G + Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK
Sbjct: 462 RGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFK 521

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +   ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P
Sbjct: 522 DNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANP 581

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F IA      ++LE+
Sbjct: 582 K-NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEV 640

Query: 659 ARKDA 663
           AR++A
Sbjct: 641 AREEA 645


>gi|312863296|ref|ZP_07723534.1| ATP-dependent DNA helicase RecG [Streptococcus vestibularis F0396]
 gi|311100832|gb|EFQ59037.1| ATP-dependent DNA helicase RecG [Streptococcus vestibularis F0396]
          Length = 676

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 242/678 (35%), Positives = 387/678 (57%), Gaps = 44/678 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEE 67
           L +P++  +G G K +   +K+      +     DLL Y P  + D  ++ K I E+ + 
Sbjct: 8   LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYED--FKSKSIFELMDG 59

Query: 68  RIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYR-----KTEMLKNVFFEG 120
               ITG +   ++ Q    KR      +  G   I + FF +     K EM       G
Sbjct: 60  EKAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAISFFNQPYLVDKIEM-------G 112

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            ++ + GK  + K+ +  +    +    +D   P    VY +  G+S     K I  A  
Sbjct: 113 AEVAIFGKWDQKKSAVTGMK---VLAQVEDDMQP----VYHVTQGVSQAQLIKAIKAAFD 165

Query: 181 R--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              L +L E + + L+ K       EA + +H P   KD      A  R  ++EL   Q+
Sbjct: 166 SGALNLLEESLPQVLMDKYRLMGRQEAVHAMHFP---KDLAEYKQALRRTKFEELFYFQM 222

Query: 239 ALLLMRKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            L +++ + K E  G+ I   E KI  KI   +PF  T++Q+ ++ +IL DM     M R
Sbjct: 223 NLQVLKAENKSETNGLAIAYDEAKIKAKIAE-LPFPLTEAQQLSLSEILADMKSGAHMNR 281

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT++A +AM  A  AG Q+ +M P  ILA+QHY+ ++ +  + +++  ++T
Sbjct: 282 LLQGDVGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSLQGFFPDLEVV--LLT 339

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
             M  A ++ AL +I  G+A +I+GTH+L QD++ Y++L LVI DEQHRFGV QR    +
Sbjct: 340 SGMKAADKKVALSKIESGEAQMIVGTHSLIQDTVTYHRLGLVITDEQHRFGVNQRRIFRE 399

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K   P VL+MTATPIPRTL +T+ G++D+S I + PAGRKPI T  +   ++D V+  +K
Sbjct: 400 KGDNPDVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLAWIK 459

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVM 534
             L +  + Y+I P IEE +  + ++ V     L + F  ++++A++HGRM + +K+ +M
Sbjct: 460 GELEKDAQVYFISPLIEESEALDLKNAVALHQELTDFFGDSATVALMHGRMKNDEKDQIM 519

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+   ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L
Sbjct: 520 QDFKDKKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVL 579

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           + +P  +     R+  +  T DGF++AEEDLK R  GEI G +QSG+P+F +A      +
Sbjct: 580 VANPK-NDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYN 638

Query: 655 LLEIARKDAKHILTQDPD 672
           +LE AR+ A  I++ DP+
Sbjct: 639 ILEEARRVASQIVS-DPN 655


>gi|196247674|ref|ZP_03146376.1| ATP-dependent DNA helicase RecG [Geobacillus sp. G11MC16]
 gi|196212458|gb|EDY07215.1| ATP-dependent DNA helicase RecG [Geobacillus sp. G11MC16]
          Length = 682

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 240/675 (35%), Positives = 389/675 (57%), Gaps = 41/675 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +  P++  +G+G++ +  L+ +        T   +LL Y P  + D + +  ++ +  E 
Sbjct: 5   MLQPVTAVKGIGEETAAALADL------GITTVGELLNYAPYRY-DDYEQKDLAAVRHEE 57

Query: 69  IVTITGYISQHS----SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            VT+ G +  HS    ++  +K+      L  G   IT++ F R    LK        +T
Sbjct: 58  KVTVEGKV--HSAPLLTYYGKKKSRLSFRLLTGRYLITVVCFNRP--YLKGKITLNETVT 113

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL------IEAVYSLPTGLSVDLFKKIIVEA 178
           V GK  + +  I          N+ ++ F        IE VYS+ + L+V   +++I  A
Sbjct: 114 VIGKWDRHRQTI----------NAYELRFGAAPEATGIEPVYSVRSPLTVKTMRRLIKAA 163

Query: 179 LSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
            ++  + +P+ +   L +        EA   +H PR  ++      AR RL Y+E L  Q
Sbjct: 164 FAQFGMHIPDLLPPALRRAYRLIDKQEAVRALHFPRSREELHQ---ARRRLVYEEFLLYQ 220

Query: 238 IALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + +  +RK  + E  GI  +   +     L  +PFS T +Q   I++IL DM    +M R
Sbjct: 221 LKMQALRKVMRDERRGIIHSFPEEQLASFLSGLPFSLTNAQRRVIREILDDMRAPRQMNR 280

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VA +A+ AAV +G Q  +M P  ILA+QH   + +   +T + VE++T
Sbjct: 281 LLQGDVGSGKTVVAAVALYAAVLSGFQGALMVPTEILAEQHVRSLAELFADTGVTVELLT 340

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
            ++    R++ L ++  G   I+IGTHAL Q+ +Q+ +L LVI DEQHRFGV+QR  L +
Sbjct: 341 SSVKGKRRKELLAKLEDGTVDIVIGTHALIQEGVQFRQLGLVITDEQHRFGVEQRRVLRE 400

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K  AP VL+MTATPIPRTL +T+ GD+D+S + E PAGRK ++T  +  N+   V++ ++
Sbjct: 401 KGHAPDVLMMTATPIPRTLAITAFGDMDVSVLDEMPAGRKKVETYWVKHNQFARVLDFIE 460

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVM 534
             L  G +AY ICP IEE ++ + ++ ++  + L  ++     + ++HGR+S  +KE+VM
Sbjct: 461 KELRRGHQAYVICPLIEESEKLDVQNAIDVHSQLVYYYRGKYEVGLMHGRLSADEKEAVM 520

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F      +L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+  S CIL
Sbjct: 521 RAFSENRIHVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDAQSYCIL 580

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD- 653
           +  P  S+    R+ ++  T DGF++AE+DL+ R  G+  G KQSG+P+F    P +HD 
Sbjct: 581 IADPK-SEIGKERMHIMTETTDGFVLAEKDLELRGPGDFFGTKQSGLPEFQFGDP-VHDY 638

Query: 654 SLLEIARKDAKHILT 668
            +LE+AR+DA  +++
Sbjct: 639 RILEVARRDAAKLVS 653


>gi|222153644|ref|YP_002562821.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J]
 gi|222114457|emb|CAR43286.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J]
          Length = 671

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/668 (35%), Positives = 376/668 (56%), Gaps = 27/668 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEE 67
           L +P+S  +G+G K +    K+            DLL Y+P  + D  ++ K + ++ + 
Sbjct: 3   LQSPISELKGLGPKSAEKFQKL------GIFTIEDLLLYYPFRYED--FKSKSVFDLQDG 54

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
               +TG +   ++ Q    +  ++      GE+ +   +     L +     ++I V G
Sbjct: 55  EKAVVTGMVVTPATVQYYGFKRNRLSFKVKQGELVIAVNFFNQPYLADKVTLNQEIAVFG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVL 185
           K  + K  +  +       +        ++ VY +  G+S     K I  A     L  +
Sbjct: 115 KWDQKKASLTGMKLLITVEDD-------LQPVYHVAQGISQSSLLKAIKSAFDTGLLETI 167

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PE I + LLQ         A   +H P   +D++    A  R+ ++EL   Q+ L ++++
Sbjct: 168 PENIPQQLLQNYRLMPRQAAIKAMHFPNDLRDYK---QALRRIKFEELFYFQMNLQVLKQ 224

Query: 246 QFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
             K E  G+ +     +  + ++++PF  T +Q  +++DIL+DMS    M R+LQGDVGS
Sbjct: 225 ANKAETAGLKMAYSKDLLSEKIKSLPFPLTNAQNRSLQDILKDMSSGQHMNRLLQGDVGS 284

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++A +AM AA  AG Q+ +M P  ILA+QHY  +++     ++ + I+   M  A +
Sbjct: 285 GKTVIASLAMYAAYTAGYQSALMVPTEILAEQHYTSLQELF--PELSIAILKSGMKVAEK 342

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R AL  IA G   +I+GTHAL QD++QY++L LVI DEQHRFGV+QR    +K   P VL
Sbjct: 343 RAALSAIAEGNVDMIVGTHALIQDAVQYHQLGLVITDEQHRFGVKQRRIFREKGENPDVL 402

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++D V+  +   + +G +
Sbjct: 403 MMTATPIPRTLAITAYGEMDVSIIDELPAGRKPILTRWVKHQQLDTVLYWMTQEIEKGAQ 462

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            Y I P IEE +  + ++ V     L  +F   + IA++HG+M + +K+++M +FK G  
Sbjct: 463 VYVISPLIEESEALDLKNAVALEQELKAYFKEKARIALMHGKMKNEEKDTIMQTFKKGQI 522

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG + S  IL+ +P  ++
Sbjct: 523 DILVSTTVIEVGVNVPNATIMLIMDADRFGLSQLHQLRGRVGRGHKQSYAILVANPK-TE 581

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++ NT DGF++AE DLK R  GEI G +QSG+P+F  A       +LE AR+ 
Sbjct: 582 TGKERMKIMTNTNDGFILAEADLKMRGSGEIFGTRQSGIPEFKTADLVEDYPILEEARRV 641

Query: 663 AKHILTQD 670
           A  I  Q+
Sbjct: 642 ATLITGQE 649


>gi|124268921|ref|YP_001022925.1| ATP-dependent DNA helicase RecG [Methylibium petroleiphilum PM1]
 gi|124261696|gb|ABM96690.1| putative ATP-dependent DNA helicase [Methylibium petroleiphilum
           PM1]
          Length = 665

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/646 (36%), Positives = 357/646 (55%), Gaps = 22/646 (3%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           R IDL  + P  + D      I+   E   V + G + + S  +L+ RR   + L D + 
Sbjct: 8   RDIDLALHLPLRYEDETRVTPIAAAHEGETVQVEGRV-RDSRVELRPRRQLIVRLADDSD 66

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
           E+ L F +      K +   G ++ V G+++       MVHP +   N        +  V
Sbjct: 67  ELVLRFLHFYPSHQKTLAV-GARLRVRGELRGGFLGREMVHPSFKAVNDDTPLATALTPV 125

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS----FPSIAEAFNIIHNPRK- 214
           Y     L     +K +  AL+R P+       +LL   S     PS+ +A   +H+P   
Sbjct: 126 YPASAQLPQAYLRKAVSSALTRAPL------DELLPPGSVPAGLPSLKQALLFLHHPAPE 179

Query: 215 ---AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIP 270
              A   + + PA +RL +DELLA Q++ L  +++       P+    G + +++L  +P
Sbjct: 180 VMLATLEDHSHPAWQRLKFDELLAQQLSQLQAQRERAALRAPPLRAGAGGLHEQLLAALP 239

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T +Q    ++I +D+++ +   R+LQGDVGSGKT+VA +A   A++AG Q  +MAP 
Sbjct: 240 FRLTGAQHRVTEEIARDLARPHPTHRLLQGDVGSGKTVVAALAATVAIDAGWQCALMAPT 299

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA+QH+  +  + +   + +  +TG+     R + LER+A G+A +++GTHA+ QD +
Sbjct: 300 EILAEQHFRKLVGWLEPLGVPIAWLTGSQKGKARTRMLERVASGEARLVVGTHAVIQDRV 359

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDIS 446
            + +L L ++DEQHRFGV QRL+L +K       PH+L+M+ATPIPRTL +T   D+D+S
Sbjct: 360 VFERLGLAVIDEQHRFGVAQRLQLKRKLEGTPLEPHLLMMSATPIPRTLAMTYYADLDVS 419

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            + E P GR PI T +    R D VI R++  +++G++ YW+CP IEE +  + ++  E 
Sbjct: 420 TLDELPPGRTPIVTKVFADGRRDSVIARIRDEVAKGRQVYWVCPLIEESETLDLQNATET 479

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              L E      + ++HGRM   +K +VM  F  G   +L++TTVIEVG+DV +AS+++I
Sbjct: 480 HARLGEALPGVQVGLLHGRMPAAEKAAVMARFTGGELAVLVSTTVIEVGVDVPNASLMVI 539

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           E+AE FGL+QLHQLRGRVGRG   S C+LLY PPLS     RL  +  T DGF IA  DL
Sbjct: 540 EHAERFGLSQLHQLRGRVGRGSVASVCVLLYTPPLSDTGKARLRAMAETNDGFEIARRDL 599

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
             R  GE +G +QSG      A      +LL  AR+ A  +L   P
Sbjct: 600 DIRGPGEFMGARQSGAALLRFADLAEDSALLAQARQLAPQLLEHHP 645


>gi|322386106|ref|ZP_08059743.1| DNA helicase RecG [Streptococcus cristatus ATCC 51100]
 gi|321269875|gb|EFX52798.1| DNA helicase RecG [Streptococcus cristatus ATCC 51100]
          Length = 671

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 226/633 (35%), Positives = 369/633 (58%), Gaps = 23/633 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL Y P  + D   +  + ++ +     I+G ++  ++ Q    +  ++      GE+ 
Sbjct: 31  DLLLYFPFRYEDFKSK-NVLDLEDGEKAVISGIVATPANVQYYGYKRNRLRFTIKQGEVA 89

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
           +   +     L +    G  + + GK  K K  +  +    +    +D     ++ VY +
Sbjct: 90  IAVNFFNQPYLADKIELGATVAIFGKWDKTKASLTGMK---VLAQVEDD----LQPVYRV 142

Query: 163 PTGLS----VDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
             G+S    V L K    + L RL  L E +   LL++       +A   +H PR   ++
Sbjct: 143 AQGISQASLVKLIKVAFDQGLDRL--LEENLPPVLLERYQLLERTQAVRAMHFPRDLAEY 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +    A  R+ ++EL   Q+ L +++ + K    G+ I  + K+  +    +PFS T++Q
Sbjct: 201 K---QALRRVKFEELFYFQMQLQVLKHETKDVSQGLAIPWQEKMLAQKKDALPFSLTEAQ 257

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           E ++++IL D+     M R+LQGDVGSGKT+VA +AM AA  AG Q+ +M P  ILA+QH
Sbjct: 258 ERSLEEILSDLQSPAHMNRLLQGDVGSGKTVVAGLAMYAAYTAGYQSALMVPTEILAEQH 317

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            + + +     ++ + ++TG M  A RR+ L  I  GQ  +++GTHAL Q+ + Y++L L
Sbjct: 318 LDSLAQLF--PELNLALLTGGMKAAERRETLAAIESGQVDMVVGTHALIQEGVVYHRLGL 375

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI+DEQHRFGV QR  L +K   P VL+MTATPIPRTL +T+ GD+D+S I + PAGRKP
Sbjct: 376 VIIDEQHRFGVDQRRILREKGNNPDVLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKP 435

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-- 515
           I T  +   +++ V++ +K  L++G + Y+I P IEE +  + ++ +     L  +F   
Sbjct: 436 IITRWVKHEQLEVVLDWMKKELAKGAQVYFISPLIEESEALDLKNAIALEEELKAYFANQ 495

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A++HGRM + +KE++M  FK+G   +L++TTVIEVG++V +A+I++I +A+ FGL+Q
Sbjct: 496 AQVALLHGRMKNDEKEAIMQDFKDGKTDILVSTTVIEVGVNVPNATIMVIMDADRFGLSQ 555

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG + S  +L+ +P  +++   R+ ++  T DGF++AEEDLK R  GEI G
Sbjct: 556 LHQLRGRVGRGNKQSYAVLVANPK-TESGKKRMKIMTETTDGFVLAEEDLKMRGSGEIFG 614

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            +QSG+P+F +A       +LE ARK A  I+ 
Sbjct: 615 TRQSGIPEFQVADIVEDYPILEEARKVASQIVA 647


>gi|169350086|ref|ZP_02867024.1| hypothetical protein CLOSPI_00828 [Clostridium spiroforme DSM 1552]
 gi|169293299|gb|EDS75432.1| hypothetical protein CLOSPI_00828 [Clostridium spiroforme DSM 1552]
          Length = 670

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/529 (38%), Positives = 317/529 (59%), Gaps = 24/529 (4%)

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALS--------RLPVLPEWIEKDLLQKKSFPSIAEAFN 207
           I  VYSL  GL+   F+  + +AL+         +P+    I+  L+ K+       A N
Sbjct: 132 ITPVYSLKDGLTQKSFQNYVKKALAFYQDHIQDEVPI-AYMIKHHLIHKEL------ALN 184

Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           +IH P   +D +    A   L Y+E L  Q+ +  ++   KK +GI    + +I  K + 
Sbjct: 185 LIHFPNSNRDIQ---EAMRYLKYEEFLKFQLTMQYIKLSRKKNLGIKKQFDQQIINKFIN 241

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +PF+ T  Q+ A+ +IL+D+     M R +QGDVGSGKT+V  I + A   AG Q  +M
Sbjct: 242 ELPFALTTDQKQAVNEILEDLKSDTTMYRFVQGDVGSGKTVVGAIGLYANYLAGFQGALM 301

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  ILA QH+  ++K  ++T I + ++TG++    ++   +++  G+ +I+IGTHALFQ
Sbjct: 302 APTEILATQHFTLLQKLFKDTNINLTLLTGHLSNKEKQIIYQQLNDGKINIVIGTHALFQ 361

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + + YYKL LVI DEQHRFGV QR  L +K      ++M+ATPIPRTL ++  GD+D+S 
Sbjct: 362 EKVNYYKLGLVITDEQHRFGVNQRKALKEKGQQVDFMIMSATPIPRTLAISLYGDMDVST 421

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I   P GRKPI + ++  + +  ++ +LK  L+ G + Y +CP +EE +  + ++    +
Sbjct: 422 IKTMPKGRKPIISDVVRSHSMKPILNKLKTYLASGGQCYVVCPLVEESEAIDSKAATSIY 481

Query: 508 NSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             +  +F+    + ++HG+M D  K  +MD FK+   ++L++TTVIEVG+DV +A+ ++I
Sbjct: 482 AGMKSYFSGHYEVGLLHGKMDDETKNKIMDDFKDNQIQILVSTTVIEVGVDVENANWMVI 541

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            NAE FGL+QLHQLRGRVGRG++   C LL +   SK +  RL  LKN  DGF ++  DL
Sbjct: 542 YNAERFGLSQLHQLRGRVGRGDKQGYCFLLTNSK-SKEALERLEFLKNCYDGFEVSFYDL 600

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL---TQDP 671
           K R  G+ILG +QSG+P F+I       ++LE++RKDA  +L   + DP
Sbjct: 601 KLRGPGDILGDQQSGLPNFMIGDVFKDVNILEVSRKDALELLKSESNDP 649


>gi|302871974|ref|YP_003840610.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574833|gb|ADL42624.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 679

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/613 (37%), Positives = 361/613 (58%), Gaps = 19/613 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101
           DLL++ P  ++D     KI E+    I +    ++ +    + +  +  KI + D TG +
Sbjct: 32  DLLWHIPRKYLDYSKLKKIRELCNGEIESFVAKVAGKPVEIETKSVKIIKIPVEDSTGVV 91

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
           T ++F +  + +KNV  EG     +GKI++    I + +P +  ++   ++   I  VY+
Sbjct: 92  TTVWFNQ--DYIKNVLKEGEIFCFSGKIERKGFYIEVKNPEFEKYDQHLLHTGRIVPVYN 149

Query: 162 LPTGLSVDLFKKIIVEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
              GLS  + + I+   L +     + ++P +I     QK +   I  A   IH P    
Sbjct: 150 STEGLSQKVIRNIVNNLLQQVDGALIDIIPPYIR----QKYNLSEINFAIKNIHFPENKL 205

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
             E    AR+RL ++E    Q++LLL+++  +K  G+ I       ++  + +PF  T++
Sbjct: 206 SLEL---ARKRLVFEEFYLLQLSLLLLKENIEKNEGLKIENAQSSLKEFEKLLPFELTEA 262

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+  + +I QD+    +M R++QGDVG GKT+VAL +  A ++AG Q  +MAP  +LA Q
Sbjct: 263 QKRVLAEIAQDLESTKQMNRLIQGDVGCGKTVVALASAYATIKAGYQVALMAPTEVLALQ 322

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY   KKY  N +  V ++ G+ P+  +   L+ I HG   ++IGTHAL QD +++  L 
Sbjct: 323 HYNECKKYFGN-KFNVRLLIGSTPKKEKEIILKEIEHGLCKMVIGTHALIQDEVKFKNLG 381

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L I DEQHRFGV QR++LT+K ++P++L+MTATPIPRTL L   GD+DIS I + P GRK
Sbjct: 382 LAITDEQHRFGVIQRVELTKKGSSPNILVMTATPIPRTLSLVLYGDLDISIIDQLPPGRK 441

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514
            I T  +  +    V   +K  L EG++ YWICP IEE +  N +S VE   SL E F  
Sbjct: 442 KILTYAVDESFRQRVYNFIKKQLDEGRQVYWICPLIEESETLNAKSAVEFAKSLKEGFFK 501

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             +I  +HG++S  +++ +++ FK+G   +L++TTV+EVGI+V +A++++IENAE FGLA
Sbjct: 502 DYNIGCLHGKLSVKERDKILNDFKDGYIHILVSTTVVEVGINVPNATVMVIENAERFGLA 561

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRGE  S CI L++   S+ +  R+  +  +++GF IAE DLK R  G++ 
Sbjct: 562 QLHQLRGRVGRGEHQSYCI-LFNQSDSEIAKKRMIAITRSQNGFEIAEMDLKLRGPGDLF 620

Query: 635 GIKQSGMPKFLIA 647
           G KQ G+  F +A
Sbjct: 621 GTKQHGVMNFKVA 633


>gi|21911087|ref|NP_665355.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS315]
 gi|28895227|ref|NP_801577.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes SSI-1]
 gi|21905297|gb|AAM80158.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28810473|dbj|BAC63410.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes SSI-1]
          Length = 671

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 246/671 (36%), Positives = 378/671 (56%), Gaps = 30/671 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D   +     +  E+
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 57  AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA--LSRLPV 184
           GK    K+ I  +    +    +D   P    VY +  G+S     K I  A  ++    
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEINAHLE 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + + E  G+PI       +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDVG
Sbjct: 224 AENRSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++   +  I   I+T  M  A 
Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPD 672
            +  I++ DP+
Sbjct: 641 VSAAIVS-DPN 650


>gi|94991096|ref|YP_599196.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS10270]
 gi|94544604|gb|ABF34652.1| ATP-dependent DNA helicase recG [Streptococcus pyogenes MGAS10270]
          Length = 671

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 247/672 (36%), Positives = 379/672 (56%), Gaps = 32/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D   +     +  E+
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 57  AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL---SRLP 183
           GK    K+ I  +    +    +D     I+ VY +  G+S     K I  A    + L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDD----IQPVYRVAQGISQSTLIKAIKSAFEIDAHLE 166

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            L E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L ++
Sbjct: 167 -LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVL 222

Query: 244 RKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           + + + E  G+PI       +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDV
Sbjct: 223 KAENRSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDV 282

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++   +  I   I+T  M  A
Sbjct: 283 GSGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAA 340

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P 
Sbjct: 341 VKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD 400

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L + 
Sbjct: 401 VLVMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKD 460

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540
            + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+ 
Sbjct: 461 AQVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDK 520

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  
Sbjct: 521 KSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK- 579

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           + +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR
Sbjct: 580 TDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFKVADIVEDYPILEEAR 639

Query: 661 KDAKHILTQDPD 672
           K +  I++ DP+
Sbjct: 640 KVSAAIVS-DPN 650


>gi|299142557|ref|ZP_07035688.1| ATP-dependent DNA helicase RecG [Prevotella oris C735]
 gi|298575992|gb|EFI47867.1| ATP-dependent DNA helicase RecG [Prevotella oris C735]
          Length = 700

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 244/674 (36%), Positives = 379/674 (56%), Gaps = 35/674 (5%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG K    LSK +N        + DLL Y+P  ++DR     I E++     V I G I
Sbjct: 14  GVGPKRKEILSKELNVQT-----WRDLLEYYPYKYVDRSKVYAIDELNGTMPFVQIKGKI 68

Query: 77  SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
                F    R+   +    DG G + L++F R  + +   +    +  V GK      R
Sbjct: 69  LSFEEFSNGARKKRIVAHFTDGHGVVDLVWF-RGAQYIYKTYALNTEYIVFGKPTIYGGR 127

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRLP--VLPEW 188
               HP         +N   ++  YS        G++    +K+    +SRLP   + E 
Sbjct: 128 YQFAHPEIEKAADLQLNEMGMQPYYSTTEKMKNNGMTSRAIEKLTKTLISRLPEGSISET 187

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   +L+   F S   AF+ IH P+   + +    A+ RL ++EL   Q+ +L      +
Sbjct: 188 LPPFILRPHHFISREAAFHGIHYPKSLDELQ---RAQVRLKFEELFYVQLNILRYASDHR 244

Query: 249 KEIGIPINVEGKIAQKILRN--------IPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           ++        G + Q + +N        + F  T +Q+  + +I  DM+   +M R+LQG
Sbjct: 245 RK------YRGYVFQHVGQNFNGFYHNNLTFELTGAQKRVMHEIRNDMASGKQMNRLLQG 298

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVAL+ M  A++ G QA IMAP  ILA+QHY  IK++ +   + VE++TG + 
Sbjct: 299 DVGSGKTLVALMTMLIAIDNGFQACIMAPTEILAEQHYATIKEFLKGIDVRVELLTGIVK 358

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-T 419
              R++ LE +A G   I++GTHA+ +D++Q+ +L L +VDEQHRFGV QR +L  K+ T
Sbjct: 359 GKRRKQVLEALAVGDVKILVGTHAVIEDTVQFARLGLAVVDEQHRFGVAQRARLWAKSET 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N++  +   ++  +
Sbjct: 419 PPHVLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKFDNQMTSLYNGIRQQI 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            +G++ Y + P I+E ++++ + + + + SL E F    I+ +HG+M   +KE  M  F 
Sbjct: 479 RQGRQVYIVFPLIKENEKNDLKDLEKGYESLLEIFPEFRISKVHGKMKPAEKEEEMRRFV 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+   
Sbjct: 539 SGETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGAKQSYCILVTSY 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLE 657
            LS+ +  R+ ++ +T DGF IAE DLK R  G++ G +QSG+   L IA       L++
Sbjct: 599 KLSEETRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLVQ 658

Query: 658 IARKDAKHILTQDP 671
           +AR +AK I+  DP
Sbjct: 659 LARDEAKKIIDNDP 672


>gi|307709631|ref|ZP_07646083.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK564]
 gi|307619529|gb|EFN98653.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK564]
          Length = 671

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 241/674 (35%), Positives = 382/674 (56%), Gaps = 30/674 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K    G  N     DLL Y P  + D   + ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSA---EKYAKLGIEN---LQDLLLYFPFRYEDFKTK-QVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GEI     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEIVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKYE 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ ++   +    +  ++PF+ T++QE ++++IL DM     M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLDWSQEKVSAVKESLPFALTQAQEKSLQEILTDMKSDRHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV A  QA +M P  ILA+QH+E +K    + ++   ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAVYQAALMVPTEILAEQHFESLKGLFPDLKLA--LLTGSLKVAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMLIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILT-----QDPD 672
            +I +     +DP+
Sbjct: 643 SYISSIEGWQEDPE 656


>gi|290579830|ref|YP_003484222.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025]
 gi|254996729|dbj|BAH87330.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025]
          Length = 671

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 245/636 (38%), Positives = 368/636 (57%), Gaps = 29/636 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL----QKRRPYKILLNDGT 98
           DLL Y+P  + D   +  +  +  E+ V +TG +   ++ Q     + R  +KI  ++  
Sbjct: 31  DLLLYYPFRYEDFKAKSVLDLLDGEKAV-VTGKVVTPANVQYYGFKRNRLSFKIKQDEAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    L++     + I + GK  + K+ +  +    I     D   P    
Sbjct: 90  --IAVSFFNQP--YLQDKVELDQDIAIFGKWDQKKSALTGMK---ILAQVTDDMQP---- 138

Query: 159 VYSLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
           VY +  G+S     K I  A     L  L E + + LL K        A   +H P   K
Sbjct: 139 VYHVAQGISQSALIKAIQSAFEAGYLRFLSENLPQVLLNKYRLLDRQTATRAMHFP---K 195

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVE-GKIAQKILRNIPFSPT 274
           D E    A  R+ ++EL   Q+ L +++   K E  G+ I  +  ++A KI   +PF+ T
Sbjct: 196 DLEEYKQALRRIKFEELFYFQLNLQVLKANNKSESNGLLITYDHDQVAAKI-AALPFALT 254

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            +Q+ ++ +IL DM     M R+LQGDVGSGKT++A +AM AA  AG Q+ +M P  ILA
Sbjct: 255 NAQKRSLDEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYAAYSAGLQSALMVPTEILA 314

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHYE ++  T   ++ + ++T  M  A RR AL  IA G   +I+GTHAL Q+ + Y+K
Sbjct: 315 EQHYESLR--TLFPELSIALLTSGMKAAVRRSALAAIADGSVDMIVGTHALIQEGVDYHK 372

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L LVI DEQHRFGV+QR    +K   P VL+MTATPIPRTL +T+ G++D+S I E PA 
Sbjct: 373 LGLVITDEQHRFGVKQRRLFREKGENPDVLMMTATPIPRTLAITAFGEMDVSLIDELPAS 432

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           RKPI T  +   ++D+V+  +K  L + ++ Y I P IEE +  + ++ V     L  +F
Sbjct: 433 RKPIVTRWVKHEQLDKVLPWVKEQLKKKEQVYVISPLIEESETLDLKNAVALEEDLKAYF 492

Query: 515 TSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
            SS  IA++HGRM + +KE++M +FK G+  +L++TTVIEVG++V +A+I+II +A+ FG
Sbjct: 493 ASSANIALMHGRMKNDEKEAIMQAFKKGSIDILVSTTVIEVGVNVPNATIMIIMDADRFG 552

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+QLHQLRGRVGRGE+ S  IL+ +P  +     R+ ++  T DGF++AEEDLK R  GE
Sbjct: 553 LSQLHQLRGRVGRGEKQSYTILVANPK-TDTGKNRMRIMTKTTDGFVLAEEDLKMRGSGE 611

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           I G++QSG+P+F +A       +LE ARK A  I+ 
Sbjct: 612 IFGVRQSGIPEFQVADIVEDYPILEEARKVASQIVA 647


>gi|19746733|ref|NP_607869.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS8232]
 gi|94994975|ref|YP_603073.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS10750]
 gi|19748960|gb|AAL98368.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
           MGAS8232]
 gi|94548483|gb|ABF38529.1| ATP-dependent DNA helicase recG [Streptococcus pyogenes MGAS10750]
          Length = 671

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 247/672 (36%), Positives = 378/672 (56%), Gaps = 32/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D   +     +  E+
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 57  AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL---SRLP 183
           GK    K+ I  +    +    +D   P    VY +  G+S     K I  A    + L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEIDAHLE 166

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            L E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L ++
Sbjct: 167 -LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVL 222

Query: 244 RKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           + + + E  G+PI       +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDV
Sbjct: 223 KAENRSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDV 282

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++   +  I   I+T  M  A
Sbjct: 283 GSGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAA 340

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P 
Sbjct: 341 VKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD 400

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L + 
Sbjct: 401 VLMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKD 460

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540
            + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+ 
Sbjct: 461 AQVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDK 520

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  
Sbjct: 521 KSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK- 579

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           + +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR
Sbjct: 580 TDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEAR 639

Query: 661 KDAKHILTQDPD 672
           K +  I++ DP+
Sbjct: 640 KVSAAIVS-DPN 650


>gi|229086408|ref|ZP_04218584.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-44]
 gi|228696924|gb|EEL49733.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-44]
          Length = 685

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/664 (35%), Positives = 383/664 (57%), Gaps = 35/664 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G++ S  L ++     ++      LL Y P  + D +    ++E+  E  VT
Sbjct: 11  PVTDVKGIGEETSELLHEMGIYTVSH------LLEYFPYRYED-YAMKDLAEVKHEERVT 63

Query: 72  ITGYISQHSSFQLQ------KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           + G +  HS+  LQ       R   ++L++     IT++ F R     K        +T+
Sbjct: 64  VEGKV--HSAPLLQYYGKKKSRLTVRVLVDRYL--ITVVCFNRP--YYKQKLKLDETVTI 117

Query: 126 TGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183
           TGK  + +  I +   H+      QDV     E VYS+   L+V   ++ I +AL+    
Sbjct: 118 TGKWDQHRQTIAVSELHFGPVARQQDV-----EPVYSVKGKLTVKQMRRFIAQALNEYGN 172

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + E +   LL +       EA   +H P   +D +    AR R  Y+E    Q+ +  +
Sbjct: 173 AITEVLPDGLLSRYKLLPRYEALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTL 229

Query: 244 RK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           RK + +   G   ++  +  ++    +PF  T +Q   + +I++DM    RM R+LQGDV
Sbjct: 230 RKMERENSKGTKKDISMRELEEFTDALPFPLTSAQRRVVSEIMKDMQSPYRMNRLLQGDV 289

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA IA+ AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A
Sbjct: 290 GSGKTVVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLVETFSHFNMNVELLTSSVKGA 349

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P 
Sbjct: 350 RRREVLAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPD 409

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + ++ V+  ++  + +G
Sbjct: 410 VLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLERVLGFVEKEVKKG 469

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540
           ++AY ICP IEE ++ + ++ ++  + L  H+   S + ++HGR+S  +KE VM+ F   
Sbjct: 470 RQAYVICPLIEESEKLDVQNAIDLHSMLMHHYQGKSQVGLMHGRLSSQEKEDVMEQFSEN 529

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  
Sbjct: 530 KVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK- 588

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIA 659
           S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE A
Sbjct: 589 SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETA 647

Query: 660 RKDA 663
           R+DA
Sbjct: 648 RQDA 651


>gi|114775351|ref|ZP_01450919.1| ATP-dependent DNA helicase RecG [Mariprofundus ferrooxydans PV-1]
 gi|114553462|gb|EAU55843.1| ATP-dependent DNA helicase RecG [Mariprofundus ferrooxydans PV-1]
          Length = 671

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 229/640 (35%), Positives = 353/640 (55%), Gaps = 24/640 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERIV 70
           PLST +GVG      L +        + R + DLL + P  +ID      I+++ +    
Sbjct: 9   PLSTVKGVGPALEKRLHQ-------RDIRTLGDLLLHLPKDYIDDRQLSPIAQLCDGVSA 61

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            I G I    +    K+R   ILL D +G I L FF+    M      EGR+I V G  +
Sbjct: 62  RIQGRILTKEARGYGKKRQVIILLADDSGRIRLNFFHSGYMMSDARLSEGREIAVRGVAE 121

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           + + +  M HP +    +     P  + VY    GLS      +I +AL+ LPV      
Sbjct: 122 RWQGQWQMTHPEWCVSEAFQ---PGYQPVYRALAGLSGKRIATLIRQALTLLPVAASSPL 178

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             +L   + P + +A   +H P    D E  + A  RL  +EL+   + L LMR++ ++ 
Sbjct: 179 DAVLAATASP-LRQALRELHQPHDL-DSEALNRAAVRLKCEELI---LYLQLMREKKRQA 233

Query: 251 IGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
               ++++ + + +++ +++PF  T +Q SA  DI  D++   RM R+LQGDVG+GKT V
Sbjct: 234 DCPAVSLQAETSSRLMHQSLPFELTDAQASAWSDISTDLNSGKRMHRLLQGDVGAGKTWV 293

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A +AM  A   G QA ++AP  +LA+QH E ++         ++++TG+     RR+ L 
Sbjct: 294 AALAMIKAAGCGYQAALLAPTEVLAKQHAETLQALFAPLGFTIKLLTGSTRAKERRELLA 353

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLL 425
            +  G+  +I+GTHAL  + + +  L L +VDEQHRFGV+QR  L  K      A H+L 
Sbjct: 354 ELGSGELKLIVGTHALLSEDVVFNHLALALVDEQHRFGVRQRWGLADKKRDGHQAVHLLG 413

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L   GD+D+S +   P GRKP++T +I  +++  +I  ++ +L    + 
Sbjct: 414 MTATPIPRTLALALYGDMDLSIMRGMPPGRKPVETRVIASDKMKSLIAGMQRILDAEGRI 473

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           YWI P+I+E ++    SV +R   L  +F  +++  +HGRM   DK   +++F  G CK+
Sbjct: 474 YWIVPRIDEDEDG--LSVDQRVELLKRYFPDANVLGLHGRMKSGDKNGALEAFTTGVCKM 531

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVG++V +A +I+IE AE +GLAQLHQLRGRVGR  E   C+L+     S+ S
Sbjct: 532 LVSTTVVEVGVNVPEARLIVIEEAESYGLAQLHQLRGRVGRSSEQGYCMLIAGDAASEGS 591

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
            TRL+ + NT DG  +AE DL  R  G+ +G +Q G   F
Sbjct: 592 RTRLNQMVNTHDGLELAEADLALRGSGDAVGTRQHGDAGF 631


>gi|313637341|gb|EFS02825.1| ATP-dependent DNA helicase RecG [Listeria seeligeri FSL S4-171]
          Length = 682

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/681 (34%), Positives = 386/681 (56%), Gaps = 25/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +S ++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSLVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKINVGETVTISGKWD 119

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
           K + +I           N ++     +E VY L   L     +K    A       + E 
Sbjct: 120 KGRAQITASKVKIGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRAAFDAYSSSIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  ++H P+   + +    AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPANLLEKYQLMDRLEAVRVLHFPKNNDELK---QARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF+ TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFALTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   + V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDVTVGLLTSSVKGKRRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSVDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVTQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    ++ VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLERVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYRPGLMHGKLLPADKEQIMRDFNDKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVXX 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+DA 
Sbjct: 591 XRMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAV 649

Query: 665 HILTQDPDLTSVRGQSIRILL 685
           H++ ++  L + + + +  LL
Sbjct: 650 HMIFEENMLENKQYEKLVALL 670


>gi|281423396|ref|ZP_06254309.1| ATP-dependent DNA helicase RecG [Prevotella oris F0302]
 gi|281402732|gb|EFB33563.1| ATP-dependent DNA helicase RecG [Prevotella oris F0302]
          Length = 700

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 243/674 (36%), Positives = 379/674 (56%), Gaps = 35/674 (5%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG K    LSK +N        + DLL Y+P  ++DR     I E++     V I G I
Sbjct: 14  GVGPKRKEILSKELNVQT-----WRDLLEYYPYKYVDRSKVYAIDELNGTMPFVQIKGKI 68

Query: 77  SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
                F    R+   +    DG G + L++F R  + +   +    +  V GK      R
Sbjct: 69  LSFEEFSNGARKKRIVAHFTDGHGVVDLVWF-RGAQYIYKTYTLNTEYIVFGKPTIYGGR 127

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRLP--VLPEW 188
               HP         +N   ++  YS        G++    +K+    +SRLP   + E 
Sbjct: 128 YQFAHPEIEKAADLQLNEMGMQPYYSTTEKMKNNGMTSRAIEKLTKTLISRLPEGSISET 187

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   +L+   F S   AF+ IH P+   + +    A+ RL ++EL   Q+ +L      +
Sbjct: 188 LPPFILRPHHFISREAAFHGIHYPKSLDELQ---RAQVRLKFEELFYVQLNILRYASDHR 244

Query: 249 KEIGIPINVEGKIAQKILRN--------IPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           ++        G + Q + +N        + F  T +Q+  + +I  DM+   +M R+LQG
Sbjct: 245 RK------YRGYVFQHVGQNFNDFYHNNLTFELTGAQKRVMHEIRNDMASGKQMNRLLQG 298

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVAL+ M  A++ G QA IMAP  ILA+QHY  IK++ +   + VE++TG + 
Sbjct: 299 DVGSGKTLVALMTMLIAIDNGFQACIMAPTEILAEQHYATIKEFLKGIDVRVELLTGIVK 358

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-T 419
              R++ LE +A G   I++GTHA+ +D++Q+ +L L +VDEQHRFGV QR +L  K+ T
Sbjct: 359 GKRRKQVLEALAVGDVKILVGTHAVIEDTVQFARLGLAVVDEQHRFGVAQRARLWAKSET 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N++  +   ++  +
Sbjct: 419 PPHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKFDNQMTSLYNGIRQQI 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            +G++ Y + P I+E ++++ + + + + SL E F    I+ +HG+M   +KE  M  F 
Sbjct: 479 RQGRQVYIVFPLIKENEKNDLKDLEKGYESLLEIFPEFRISKVHGKMKPAEKEEEMRRFV 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+   
Sbjct: 539 SGETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGAKQSYCILVTGY 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLE 657
            LS+ +  R+ ++ +T DGF IAE DLK R  G++ G +QSG+   L IA       L++
Sbjct: 599 KLSEETRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFNLKIADIARDGQLVQ 658

Query: 658 IARKDAKHILTQDP 671
           +AR +AK I+  DP
Sbjct: 659 LARDEAKKIIDNDP 672


>gi|326201982|ref|ZP_08191852.1| ATP-dependent DNA helicase RecG [Clostridium papyrosolvens DSM
           2782]
 gi|325987777|gb|EGD48603.1| ATP-dependent DNA helicase RecG [Clostridium papyrosolvens DSM
           2782]
          Length = 690

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 228/641 (35%), Positives = 369/641 (57%), Gaps = 15/641 (2%)

Query: 41  FIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGT 98
             D+L Y+P  + DR     I+++      +  G I  + S    KR     ++ + D T
Sbjct: 36  LFDVLTYYPREYEDRSSIKNIADLQNGVPCSFEGTIVSNVSITRPKRGMTVSRVSIEDST 95

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IE 157
           G+IT ++F +    +KN    G      GK ++  N++ +V+P +   +S+D+   L I 
Sbjct: 96  GKITAIWFNQP--YVKNSLKLGDNYIFFGKAERKLNKLQIVNPVFEKASSKDMKKSLKIL 153

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
            VYS    L  ++ + ++ EA+  +    L + I   +  K   P    +   IH P   
Sbjct: 154 PVYSSTKDLGQNIIRSVVYEAIKIINDIELEDMIPLSVRDKFKLPDRTYSIKQIHFPASV 213

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           +D E    AR RL ++EL   Q+ LL  +       +GI      ++ +  +++ PF  T
Sbjct: 214 RDIE---SARFRLVFEELFMLQLGLLSYKSLATDTRVGIKYTHIDQM-EDFIKSFPFELT 269

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            +Q+    ++ +DM     M R++QGDVGSGKT++A++A+  AV+ G Q  +M P  ILA
Sbjct: 270 NAQKKVFVEVEKDMESSRVMNRLVQGDVGSGKTMIAVLALFKAVKCGYQGALMVPTEILA 329

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH++ IK       + VE+++ ++ +  ++  +E +  G+  ++IGTHAL +D +++ +
Sbjct: 330 EQHFKSIKSLFDCFGVSVELLSSSLTKKQKQLIVEELKEGKTDVVIGTHALIEDYVEFKQ 389

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L LVI DEQHRFGV+QR  LT+K   P VL+MTATPIPRTL L   GD+DIS I E P G
Sbjct: 390 LGLVITDEQHRFGVRQRTILTEKGQNPDVLVMTATPIPRTLALILYGDLDISIIDELPPG 449

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           RKPIKT  +     + +   ++  ++EG++ Y +CP +EE +E   +S V     + +  
Sbjct: 450 RKPIKTYSVNEAMRERINNFVREKVNEGRQVYIVCPLVEESEEIEAKSAVVTAEDISKSV 509

Query: 515 TS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               ++ IIHG+M   +KE++M SF +G   +L++TT+IEVG++V +A+++IIENAE FG
Sbjct: 510 FRDLNVGIIHGKMKSSEKEAIMKSFVSGEISILVSTTIIEVGVNVPNATVMIIENAERFG 569

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LAQLHQLRGRVGRG+E S CI L++   SK +  R+ ++ ++ DGF+I+E+DL+ R  GE
Sbjct: 570 LAQLHQLRGRVGRGDEQSFCI-LFNQSNSKVAKERMKIMTHSNDGFVISEKDLEIRGPGE 628

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             G +Q G+P+  IA       +L+ A++ A  I+  DP L
Sbjct: 629 FFGTRQHGLPELKIANLYKDMEILKQAQESAMEIIQADPGL 669


>gi|71904171|ref|YP_280974.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS6180]
 gi|71803266|gb|AAX72619.1| ATP-dependent DNA helicase [Streptococcus pyogenes MGAS6180]
          Length = 671

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 247/672 (36%), Positives = 378/672 (56%), Gaps = 32/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D   +     +  E+
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 57  AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL---SRLP 183
           GK    K+ I  +    +    +D   P    VY +  G+S     K I  A    + L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEIDAHLE 166

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            L E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L ++
Sbjct: 167 -LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVL 222

Query: 244 RKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           + + + E  G+PI       +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDV
Sbjct: 223 KAENRSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDV 282

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++   +  I   I+T  M  A
Sbjct: 283 GSGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAA 340

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P 
Sbjct: 341 VKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD 400

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L + 
Sbjct: 401 VLMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKD 460

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540
            + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+ 
Sbjct: 461 AQVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDK 520

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  
Sbjct: 521 KSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK- 579

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           + +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR
Sbjct: 580 TDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEAR 639

Query: 661 KDAKHILTQDPD 672
           K +  I++ DP+
Sbjct: 640 KVSAAIVS-DPN 650


>gi|320160931|ref|YP_004174155.1| ATP-dependent DNA helicase RecG [Anaerolinea thermophila UNI-1]
 gi|319994784|dbj|BAJ63555.1| ATP-dependent DNA helicase RecG [Anaerolinea thermophila UNI-1]
          Length = 816

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 237/688 (34%), Positives = 389/688 (56%), Gaps = 37/688 (5%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           L  L  PL    GVGKK +  L K+ IN          DLL++ P  + D      I+++
Sbjct: 124 LRTLQTPLHRVSGVGKKTAEALEKLGINT-------LQDLLYFFPRRYDDYSRLKPINKL 176

Query: 65  SEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
                VT+ G +   +S Q++  K +  + ++ DGTG + L +F +   +  N F +G +
Sbjct: 177 KYGDEVTVLGVVQAIASRQVRDGKLQLIEAIITDGTGTLRLSWFNKLWYV--NRFPKGTQ 234

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           + V+GK+     ++IM  P     + + ++   I  VY L   L+    ++++   + + 
Sbjct: 235 VAVSGKLDMYLGKLIMKDPEIEEIDREQLHTSRIVPVYPLTADLNQKSLRRLMYRTIMQW 294

Query: 183 -PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P + +++   +        +  A +  H P  ++D      AR RLA+DE+   Q+ +L
Sbjct: 295 APKVSDFLPASVRSSLKLLELGVALSQAHFP-DSQDV--LDQARWRLAFDEIFLLQLGVL 351

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
             +  +K       +V     ++ L  +P+  T +Q+ A+++I  D+     M R+LQGD
Sbjct: 352 RQKHSWKSLQARVFDVPDTWLEQKLAQLPYELTNAQKRAVQEIRADLVSGKPMDRLLQGD 411

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-YTQNTQII--------V 352
           VGSGKT+VA +A+      G Q  +MAP  ILA+QHY  + +  TQ+ +          +
Sbjct: 412 VGSGKTIVAALAIGMVTYHGAQVAVMAPTSILAEQHYRNLSRVLTQSDESTLPILQPEQI 471

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++T ++  A R K L  + HG   ++IGTHAL +D +Q+  L LV++DEQHRFGV QR 
Sbjct: 472 RLLTSDVRGAEREKILNDLQHGSVKLLIGTHALIEDPVQFQDLQLVVIDEQHRFGVAQRA 531

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT-VIIPINRIDEV 471
            L QK   PH+L+MTATPIPR+L LT  GD+D++ + E P GR+P++T V+ P+ R +  
Sbjct: 532 ALRQKGNNPHLLVMTATPIPRSLALTIYGDLDLTVMDEMPPGRQPVETHVLHPLER-ERA 590

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDID 529
            + ++  +S+G +AY I P +E+ +     SVV+ +  L +       I ++HG++   +
Sbjct: 591 YQLIRHEISKGHQAYIIYPMVEQNENGEHLSVVQEYTRLQQEIFPEFRIGMMHGKLKPEE 650

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+ VM  F++G   +L++T+VIEVG+DV +A++++IE A  FGLAQLHQ RGRVGRG E 
Sbjct: 651 KDEVMAGFRDGKYHILVSTSVIEVGVDVPNATVMLIEGANRFGLAQLHQFRGRVGRGSEK 710

Query: 590 SSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           S C+L+   P S ++    RLSV+  T DGF++AE+DL+QR  GE LG +Q+G  +  +A
Sbjct: 711 SYCLLI---PESDDALENERLSVMVETNDGFVLAEKDLQQRGPGEFLGTRQAGFSELKMA 767

Query: 648 Q-PELHDSLLEIARKDAKHILTQDPDLT 674
              ++H  ++E AR+ A+ I  QDP+L+
Sbjct: 768 NLTDVH--IIEKARQQAQLIFQQDPELS 793


>gi|289547971|ref|YP_003472959.1| ATP-dependent DNA helicase RecG [Thermocrinis albus DSM 14484]
 gi|289181588|gb|ADC88832.1| ATP-dependent DNA helicase RecG [Thermocrinis albus DSM 14484]
          Length = 783

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/619 (37%), Positives = 350/619 (56%), Gaps = 28/619 (4%)

Query: 89  PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS 148
           P +++  DGTG + L F Y K   +K  F    ++ V G++K+ +    MVHP  +    
Sbjct: 164 PLRVVCTDGTGYLVLRFRY-KDPRVKLRFKPSTQLIVYGRVKEFQGEKYMVHPEILSEEE 222

Query: 149 QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL----PEWIEKDLLQKKSFPSIAE 204
                P           LS     K + +A+  +  L    PE+I +++LQK +F  I E
Sbjct: 223 AGSILPFYNIRTKNEQSLSAKTRHKRVRKAMFHITELAKHMPEYIPREILQKYNFLEIGE 282

Query: 205 AFNIIHNPRKAKDFEWTS---PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK- 260
           +F + H P    +    S   P + RL YDEL   Q+AL L R + + +   P   EGK 
Sbjct: 283 SFYLTHRPPTGDEETLNSFLAPFQRRLVYDELFIFQLALQLRRSEIRSQKA-PTLKEGKE 341

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
             ++ + ++PF  T +Q+  I++IL D+ ++  M R+LQGDVGSGKT+VA+    A  + 
Sbjct: 342 WVEQFVSSLPFELTGAQKRVIQEILTDVEKEVPMSRLLQGDVGSGKTVVAMAISYAFAKE 401

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q  +M P  ILA+QHYE  +K+ +   + V ++T ++    R       A G  HI+I
Sbjct: 402 GYQTAVMVPTEILARQHYENFRKFLEPMGVRVGLLTSSVKGRERLSVKYHTARGHLHILI 461

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLT 438
           GTHAL Q+ +++ +L  V+VDEQHRFGV QR  L QK     PH L+M+ATPIPRTL L+
Sbjct: 462 GTHALLQEEVEFNRLGFVVVDEQHRFGVLQRKILLQKGRGFYPHCLVMSATPIPRTLALS 521

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
             GD+D+S + + PAGRKP+ T I+  +R +E++E ++  L  G + Y I P IEE +  
Sbjct: 522 LYGDLDVSFLDQMPAGRKPVITTIVFESRTEEMLEVIRRELQAGHRVYVIYPLIEESERL 581

Query: 499 NFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           + ++    +      F   ++ ++HG+M D +K ++M+ F+     +L++T+V+EVG+DV
Sbjct: 582 SLKAATTEYERWKNLFPERNVLLLHGKMKDSEKIAIMEEFRE-KGDILVSTSVVEVGVDV 640

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL------YHPPLSKNSYTRLSVL 611
             A++++IE+A  FGL+QLHQLRGRVGR    S C L+      Y P +      RL VL
Sbjct: 641 PTATVMVIESAHRFGLSQLHQLRGRVGRSNLTSYCFLVVPDQERYSPAMR-----RLKVL 695

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ--PELHDSLLEIARKDAKHILTQ 669
            +T DGF IAEED+  R  GE+LG  QSG   F +A    E    LLE+AR+DA  ++ +
Sbjct: 696 VSTYDGFKIAEEDMLMRGPGELLGESQSGFFGFRVANFMREQDRRLLELAREDASELIKK 755

Query: 670 DPDLTSVRGQSIRILLYLY 688
           DP L +      +++LY Y
Sbjct: 756 DPFLLN-HADLRKMVLYRY 773


>gi|260584631|ref|ZP_05852377.1| ATP-dependent DNA helicase RecG [Granulicatella elegans ATCC
           700633]
 gi|260157654|gb|EEW92724.1| ATP-dependent DNA helicase RecG [Granulicatella elegans ATCC
           700633]
          Length = 683

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 225/641 (35%), Positives = 365/641 (56%), Gaps = 25/641 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL + P  + D   R  +S I ++  VT+ G I           +  +I      GE  
Sbjct: 33  DLLTHFPFRYEDLQVR-DVSTIMDQEKVTLAGIIVTEPVVHYYGFKKNRISCRMAIGEQV 91

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV----NFPLIEA 158
           +   +     LKN   + ++  + GK    ++ ++ +    I    +D+    NF   EA
Sbjct: 92  IQVSFFNQPYLKNKLIQHQECIIFGKWDAKRSTLMGMK---IISTKEDMEETSNF---EA 145

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPV----LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           VY     +      K+I  AL   P+    +P  +   + +K+   S  EA   +H P  
Sbjct: 146 VYRTNKSIRQSTLLKLIQTAL---PLYKENIPNPLPASIQRKRQLLSHPEAVEGMHFP-- 200

Query: 215 AKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            KD   +  +R++L Y EL   Q+ L  L +K+   + G  I  E    +  ++ +PF+ 
Sbjct: 201 -KDEHHSKQSRQQLVYQELFCYQLKLQSLKKKRHHSQKGQSILYENVALKAFIQTLPFTL 259

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q+  + +I  D+     M R+LQGDVGSGKT+VA IAM A    G QA +M P  +L
Sbjct: 260 TEGQKKVVNEICYDLRAPYEMSRLLQGDVGSGKTVVATIAMVATALTGKQACLMVPTELL 319

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A QHYE I   T+ T+I V  +TG      RR+ LE++  G+  +++GTHALFQ+ + Y+
Sbjct: 320 ADQHYETICALTKETEIKVGKLTGTTTLKERRQLLEQLEKGELQLLVGTHALFQEDVIYH 379

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L  +++DEQHRFGV+QR +L QK T  +VL MTATPIPRTL +T+ G++D S + E P 
Sbjct: 380 DLAFIVIDEQHRFGVKQRAQLAQKGTGVNVLQMTATPIPRTLAITTFGEMDTSILKEVPK 439

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GR+PI+T  +    +++V + ++  +  G++AY I P IEE +  + ++  E +  + + 
Sbjct: 440 GRQPIQTFWVKEQELEKVYDYIEKQVQTGRQAYVISPLIEESENLDVQNATEIYEMISKR 499

Query: 514 FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           F +  S+ ++HGR+   +KESVM +F+    ++L++TTVIEVG+DV +A++++I +A+ F
Sbjct: 500 FENRLSVGLLHGRLKSDEKESVMTAFQKNDVQVLVSTTVIEVGVDVPNATVMVILDADRF 559

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GLAQLHQLRGRVGRGE  S+CIL+  P  ++    R+ ++  + DGF ++++DL+ R  G
Sbjct: 560 GLAQLHQLRGRVGRGEHASTCILIASPK-TEQGKQRMQIMCESTDGFYLSQKDLELRGSG 618

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           ++ G++QSG+P+F +A       +LE AR+DA   + ++ D
Sbjct: 619 DVFGLRQSGIPEFKVADIVQDYDILEQAREDAITFVIEEED 659


>gi|255029718|ref|ZP_05301669.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes LO28]
          Length = 648

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/660 (35%), Positives = 380/660 (57%), Gaps = 27/660 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSRLPVLPE 187
           K + ++           S++     +E VY L   L   ++  + ++  ++ S+   + E
Sbjct: 120 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQ--DIEE 173

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-Q 246
            I  +LL+K       EA  I+H P   K+ E    AR R+ Y+E L  Q+ +   RK +
Sbjct: 174 VIPGNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIE 230

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGK
Sbjct: 231 REKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGK 290

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+
Sbjct: 291 TVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRE 350

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL M
Sbjct: 351 LLAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFM 410

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y
Sbjct: 411 TATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVY 470

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     
Sbjct: 471 IICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDC 530

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++  
Sbjct: 531 LVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGVDQSYCILIADPK-TEVG 589

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDA 663
             R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+DA
Sbjct: 590 KERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDA 648


>gi|313632773|gb|EFR99739.1| ATP-dependent DNA helicase RecG [Listeria seeligeri FSL N1-067]
          Length = 682

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/681 (34%), Positives = 386/681 (56%), Gaps = 25/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +S ++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSLVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKINVGETVTISGKWD 119

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
           K + +I           N ++     +E VY L   L     +K    A       + E 
Sbjct: 120 KGRAQITASKVKIGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRAAFDAYSSSIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  ++H P+   + +    AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPANLLEKYQLMDRLEAVRVLHFPKNNDELK---QARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF+ TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFALTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   + V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDVTVGLLTSSVKGKRRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSVDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    ++ VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLERVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYRPGLMHGKLLPADKEQIMRDFNDKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVXX 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+DA 
Sbjct: 591 XRMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAV 649

Query: 665 HILTQDPDLTSVRGQSIRILL 685
           H++ ++  L + + + +  LL
Sbjct: 650 HMIFEENMLENKQYEKLVALL 670


>gi|301311100|ref|ZP_07217029.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 20_3]
 gi|300831163|gb|EFK61804.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 20_3]
          Length = 698

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 243/670 (36%), Positives = 370/670 (55%), Gaps = 21/670 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG K +  L K      A  + + DLLFY P  +IDR    K++EIS     + + G I
Sbjct: 14  GVGPKKADILQK-----EAGISSYEDLLFYFPYKYIDRSRFYKVAEISGNMPYIQLKGQI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    + +      +DGTG I L++F +    + + +    +  V GK  +  +  
Sbjct: 69  LYFDTLGEGRSKRLVGKFSDGTGTIDLVWF-KGLNYVTDKYRPNTEYIVFGKPTEFGHTY 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP        D     +   Y+    +         ++ L    +      LPE + 
Sbjct: 128 NIPHPDIDSMEQADQVANGLTPFYNTSEKMKKSFLNSRAIQNLQYTLLSWLNWELPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
            D+L++    S+ EA   IH P  A        A+ RL +DEL   Q+ +L      K +
Sbjct: 188 PDVLKRIHMMSMTEAVRNIHFPESAAKLR---DAQLRLKFDELFFIQLNILRTASVRKLK 244

Query: 251 I-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           + GI     G       +  +PF  T +Q+  +++I  DM    +M R+LQGDVGSGKTL
Sbjct: 245 LKGIVFPTVGHYFNTFYKEYLPFELTNAQKRVVREIRIDMGSGRQMNRLLQGDVGSGKTL 304

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           V L++M  A++   QA +MAP  ILA QHY  I  + ++  + V ++TG+  +  R K L
Sbjct: 305 VGLLSMLLAIDNHCQACMMAPTEILATQHYATIMGFLKDMDVKVALLTGSTKKKERDKIL 364

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMT 427
             IA G+  I+IGTHAL ++++ +  L L I+DEQHRFGV+QR +L  K T  PHVL+MT
Sbjct: 365 PAIASGEIQIVIGTHALIEETVVFSSLGLAIIDEQHRFGVEQRSRLWMKNTIVPHVLVMT 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S I E P GRKPI+T+    N+  ++ E L+  + +G++ Y 
Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTLHRYDNKKAQLYEFLRKEIQKGRQVYV 484

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P IE  ++ +++ +   F +  E F    + ++HGRM   DK++ M  F +G  ++L+
Sbjct: 485 VYPLIEGNEKLDYKDLEAGFETFKEVFPEYKVCMVHGRMKAADKDTEMQKFISGEAQILM 544

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S CIL+    LS ++  
Sbjct: 545 ATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILVSSYKLSNDTRK 604

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665
           RL ++ N+ +GF IAE DL+ R  G++ G +QSG    L IA       +L+ AR  A+ 
Sbjct: 605 RLEIMVNSTNGFEIAEADLRLRGHGDLEGTRQSGEGIDLKIADLAADGQILQYARDIAQG 664

Query: 666 ILTQDPDLTS 675
           +L +DP+L S
Sbjct: 665 VLDEDPELLS 674


>gi|81428314|ref|YP_395314.1| ATP-dependent DNA helicase, RecG [Lactobacillus sakei subsp. sakei
           23K]
 gi|78609956|emb|CAI55003.1| ATP-dependent DNA helicase, RecG [Lactobacillus sakei subsp. sakei
           23K]
          Length = 680

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/661 (33%), Positives = 374/661 (56%), Gaps = 23/661 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL----QKRRPYKILLNDGT 98
           DLL+Y P  + D   +  +SE  ++  VT+ G +            + R   ++L+N   
Sbjct: 32  DLLYYFPFRYEDLKVK-DLSEAVDQEKVTLKGTVVADPVVSRWGPGKTRLNVRLLINH-- 88

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            ++ ++ F+ +   LK+ F  G  I V GK    +N +  V    +    Q  + P   A
Sbjct: 89  -DVIMVTFFNQP-YLKDKFEAGVDIAVYGKWDARRNSLTGVKVLAV----QSADNPSFAA 142

Query: 159 VYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           +YS    +      K+I EA      V+P+ I  D+ ++    S  E    +H P   + 
Sbjct: 143 IYSTNKNVRQGTLVKLIREAFDNYQSVIPDLIPADIRERYKLVSEVELIAGMHFP---ES 199

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKS 276
           +     AR    + E    Q+ L ++++  +  E G+ +  +    ++ ++ +PF  T +
Sbjct: 200 YPEAKQARRTAIFHEFFLYQLQLQVIKQADRHVENGLALPYQNAALKEFIKTLPFDLTDA 259

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+  + +I  D+     M R+LQGDVGSGKT+VA IAM AAV AG QA +M P  ILA+Q
Sbjct: 260 QKRVVNEICLDLKAPAHMNRLLQGDVGSGKTIVAAIAMFAAVTAGFQAALMVPTEILAEQ 319

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY+ ++K      + V ++TG+     RR  L  I  G+ +II+GTHAL QD++ Y+KL 
Sbjct: 320 HYQSLQKLYAPMNVTVGLLTGSTTAKERRTLLADIESGRINIIVGTHALIQDAVVYHKLG 379

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
             ++DEQHRFGV QR  L +K   P +L MTATPIPRTL +T+ G++D+S I E P GR 
Sbjct: 380 FAVIDEQHRFGVNQRRVLREKGLQPDMLAMTATPIPRTLAITAYGEMDVSTIDELPKGRI 439

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PI+T  +  N++++ +  ++  L++  + + I P I E ++ + ++  E + +L E F  
Sbjct: 440 PIETSWVRSNQVEQALSFVQKQLADNSQVFAITPLIAESEQMDLKNAEEIYATLAERFEP 499

Query: 517 S--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A++HG++ D +K  +M +F N   +LL++TTV+EVG+DV +A++++I +A+ FGLA
Sbjct: 500 QYHVALLHGKLKDDEKNRIMTAFSNNEIQLLVSTTVVEVGVDVPNATVMMIFDADRFGLA 559

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG++ + C+L+  P  ++    R++++  T +GF++A++DL+ R  GE+ 
Sbjct: 560 QLHQLRGRVGRGKKKAYCLLIADPK-NQQGVDRMTIMTETTNGFVVAQKDLELRGPGEVF 618

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           G +QSG+P F +  P    + L++A+++ + I T DP  +      ++   YL Q  + +
Sbjct: 619 GDRQSGLPVFKVGDPVADFASLQVAQQEVQKIFTVDPTFSQPAYAPLKA--YLAQQKQNY 676

Query: 695 Q 695
           Q
Sbjct: 677 Q 677


>gi|150009297|ref|YP_001304040.1| ATP-dependent DNA helicase RecG [Parabacteroides distasonis ATCC
           8503]
 gi|256841865|ref|ZP_05547371.1| ATP-dependent DNA helicase RecG [Parabacteroides sp. D13]
 gi|298376914|ref|ZP_06986868.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_19]
 gi|149937721|gb|ABR44418.1| ATP-dependent DNA helicase RecG [Parabacteroides distasonis ATCC
           8503]
 gi|256736759|gb|EEU50087.1| ATP-dependent DNA helicase RecG [Parabacteroides sp. D13]
 gi|298265898|gb|EFI07557.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_19]
          Length = 698

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 243/670 (36%), Positives = 370/670 (55%), Gaps = 21/670 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG K +  L K      A  + + DLLFY P  +IDR    K++EIS     + + G I
Sbjct: 14  GVGPKKADILQK-----EAGISSYEDLLFYFPYKYIDRSRFYKVAEISGNMPYIQLKGQI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    + +      +DGTG I L++F +    + + +    +  V GK  +  +  
Sbjct: 69  LYFDTLGEGRSKRLVGKFSDGTGTIDLVWF-KGLNYVTDKYRPNTEYIVFGKPTEFGHTY 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP        D     +   Y+    +         ++ L    +      LPE + 
Sbjct: 128 NIPHPDIDSMEQADQVANGLTPFYNTSEKMKKSFLNSRAIQNLQYTLLSWLNWELPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
            D+L++    S+ EA   IH P  A        A+ RL +DEL   Q+ +L      K +
Sbjct: 188 PDVLKRIHMMSMTEAMRNIHFPESAAKLR---DAQLRLKFDELFFIQLNILRTASVRKLK 244

Query: 251 I-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           + GI     G       +  +PF  T +Q+  +++I  DM    +M R+LQGDVGSGKTL
Sbjct: 245 LKGIIFPTVGHYFNTFYKEYLPFELTNAQKRVVREIRIDMGSGRQMNRLLQGDVGSGKTL 304

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           V L++M  A++   QA +MAP  ILA QHY  I  + ++  + V ++TG+  +  R K L
Sbjct: 305 VGLLSMLLAIDNHCQACMMAPTEILATQHYATIMGFLKDMDVKVALLTGSTKKKERDKIL 364

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMT 427
             IA G+  I+IGTHAL ++++ +  L L I+DEQHRFGV+QR +L  K A  PHVL+MT
Sbjct: 365 PAIASGEIQIVIGTHALIEETVVFSSLGLAIIDEQHRFGVEQRSRLWMKNAIVPHVLVMT 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S I E P GRKPI+T+    N+  ++ E L+  + +G++ Y 
Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTLHRYDNKKAQLYEFLRKEIQKGRQVYV 484

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P IE  ++ +++ +   F +  E F    + ++HGRM   DK++ M  F +G  ++L+
Sbjct: 485 VYPLIEGNEKLDYKDLEAGFETFKEVFPEYKVCMVHGRMKAADKDTEMQKFISGEAQILM 544

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S CIL+    LS ++  
Sbjct: 545 ATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILVSSYKLSNDTRK 604

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665
           RL ++ N+ +GF IAE DL+ R  G++ G +QSG    L IA       +L+ AR  A+ 
Sbjct: 605 RLEIMVNSTNGFEIAEADLRLRGHGDLEGTRQSGEGIDLKIADLAADGQILQYARDIAQG 664

Query: 666 ILTQDPDLTS 675
           +L +DP+L S
Sbjct: 665 VLDEDPELLS 674


>gi|309389035|gb|ADO76915.1| ATP-dependent DNA helicase RecG [Halanaerobium praevalens DSM 2228]
          Length = 685

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 248/666 (37%), Positives = 382/666 (57%), Gaps = 31/666 (4%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           +GVG K++  LS++    +    R  DLL+Y P  + DR    ++S+I   +I     + 
Sbjct: 13  KGVGPKWAERLSQL----DIKTVR--DLLYYFPREYEDR---SQLSQIKYTKIGEKANFK 63

Query: 77  SQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI--- 129
            +      QK RP     K+  +DG+  +  +++      L+N F EG +  +TGKI   
Sbjct: 64  VEVLKINYQKIRPNLDLLKVSFSDGSDVVNGIWY--NQAYLRNQFKEGDQYLITGKISEK 121

Query: 130 --KKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PV 184
             +K K + I  +P Y  I   +  +N   I  +Y L  GLS    +K+I   +     +
Sbjct: 122 NWRKYKRKEIN-NPVYEKIGSEASVLNTGRIVPIYPLTEGLSQRRLRKVIANVIKNYGSL 180

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L + + ++LL+K  FP +  A   +H P+  K     + +R+RLA++E    Q+  L  +
Sbjct: 181 LKDQLPRNLLEKYQFPDLKTAILGMHFPKNQKH---KNLSRQRLAFEEFFHLQLYALEEK 237

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           K+  K  GI    +  +  K+L  + F  T +Q+  + +I  DM  +  M R+LQGDVGS
Sbjct: 238 KKKTKFKGIKHEFKQSVNDKLLSQLNFELTAAQKRVLNEIEADMGSEKTMARLLQGDVGS 297

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA +A+   +  G Q + MAP  ILA+QH+   ++  ++    VEI+TG++ QA R
Sbjct: 298 GKTIVAALALLQTLANGCQGIFMAPTEILAEQHFLNFQELLKDFDYKVEILTGSVKQAAR 357

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           ++    I  G+  +IIGTHALFQ ++ Y    LV++DEQHRFGV+QR  L +K  +P +L
Sbjct: 358 KEIEAEIKTGEIDLIIGTHALFQKALTYQNPGLVVIDEQHRFGVEQRHSLKEKGDSPDLL 417

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPR++ +   GD+D+S I + P GRK I T     NR  ++   L+  +++G++
Sbjct: 418 IMTATPIPRSMAMLIYGDLDLSVIDQMPPGRKKIATFWRRENRRKKIYSFLEEKINKGRQ 477

Query: 485 AYWICPQIEEKKE-SNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           AY +CP IEE +E     +  E +N+L   F   + +A+IH  +  ++K+ +M+ F+ G 
Sbjct: 478 AYIVCPLIEESEEMPELLAAEELYNNLKTGFFKNNKLALIHSSVPALEKKEIMEKFRAGK 537

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +LIATTVIEVG+DV +ASI+IIENAE FGLAQLHQLRGRVGRG   S CIL+ +P   
Sbjct: 538 IDILIATTVIEVGVDVSNASIMIIENAERFGLAQLHQLRGRVGRGSYQSYCILISNPR-G 596

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +++  RL ++  + +GFLIAEEDLK R  GE  G KQ G+    +A       LL  AR 
Sbjct: 597 EDATRRLEIMCKSNNGFLIAEEDLKMRGPGEFFGTKQHGIDDLKVASLTADQELLAKART 656

Query: 662 DAKHIL 667
           +A+ I+
Sbjct: 657 EAQAIV 662


>gi|307718497|ref|YP_003874029.1| ATP-dependent DNA helicase RecG [Spirochaeta thermophila DSM 6192]
 gi|306532222|gb|ADN01756.1| ATP-dependent DNA helicase RecG [Spirochaeta thermophila DSM 6192]
          Length = 683

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 249/696 (35%), Positives = 374/696 (53%), Gaps = 38/696 (5%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
            L  + AP++T  G+G K +    K  I + G        DLL ++P  + DR     ++
Sbjct: 2   LLEDISAPITTLAGIGGKTARHFHKLGIRSVG--------DLLQHYPRDYEDRSTFTSLA 53

Query: 63  EI------SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNV 116
           E       +    +T+  YI + S+  L      +I +NDGT    L+ F R    L   
Sbjct: 54  EAHATGKATTVATITLMDYIGKPSNPVL------RIFINDGTELAALVCFGRN--FLSRK 105

Query: 117 FFEGRKITVTGKIK----KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFK 172
           F  G K+ V+G+ +    KL++   ++ P+          F  I  +Y     L   + +
Sbjct: 106 FSPGMKVFVSGQFEMRYGKLQSTRFIIEPY----TESPKEFGKILPIYPTTEDLPQTILR 161

Query: 173 KIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
             +  AL + LP+L + +   LL  +S P + EA   IH P    D    + AR RL Y 
Sbjct: 162 SAVQAALRQYLPLLDDPLPPSLLAARSLPPLPEALAAIHFP---PDRAALTRARTRLIYQ 218

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           EL   Q+ ++    + K ++  P++    + +++ R++PF  T  QE A+++I  D +  
Sbjct: 219 ELFFLQVIVVRAAMKRKTQLQAPVHFPRTLQERVRRSLPFPLTPDQEKALEEIYADTTSP 278

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R+LQGDVGSGKTLVAL+A    +EAG Q   M P  +LA QH E          I 
Sbjct: 279 RPMARLLQGDVGSGKTLVALLAALPYIEAGHQVAFMVPTELLALQHAETAHTLLSPFGIR 338

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
             ++ G +  A RR  L  I  G+  ++IGTH LF D + Y  L LVI+DEQH+FGV QR
Sbjct: 339 TALLAGTLQPAARRTLLSAILRGEVDLVIGTHTLFSDDVAYRNLRLVIIDEQHKFGVSQR 398

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            +L +KA+ P +LLMTATPIPRT+ LT  GD+D+S I   P GRKP++T +  + + ++V
Sbjct: 399 ARLLEKASHPDLLLMTATPIPRTMALTLYGDMDMSTIKTMPPGRKPVRTHLAVLGKEEKV 458

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
              ++  L +G +AY++ P I E ++   R+       L   +    +A+IH R+ D +K
Sbjct: 459 YTWVEKELEKGHQAYFVYPLIGESEKLELRNAESMVEFLRRRYPRWKVALIHSRIPDEEK 518

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E +M  F  GT ++L+AT+VIEVG++V  A+ I+IE+AE FGLA LHQLRGRVGR +  S
Sbjct: 519 ERIMREFMQGTIRILVATSVIEVGVNVPTATCIVIEHAERFGLATLHQLRGRVGRSDRQS 578

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQP 649
              L+Y P L++ +  RL  +K T DGFLIAE+DL+ R  G++L G  Q+G  +  IA  
Sbjct: 579 YAFLVYSPDLTEEAKARLRTMKETTDGFLIAEKDLEIRGPGDLLDGTIQAGHLRLRIAHL 638

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                L+   RKD + +L +DP L       IR L+
Sbjct: 639 TRDAPLMHEVRKDVEALLARDPGLLRPEHTLIRTLI 674


>gi|160947391|ref|ZP_02094558.1| hypothetical protein PEPMIC_01325 [Parvimonas micra ATCC 33270]
 gi|158446525|gb|EDP23520.1| hypothetical protein PEPMIC_01325 [Parvimonas micra ATCC 33270]
          Length = 675

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 240/682 (35%), Positives = 378/682 (55%), Gaps = 38/682 (5%)

Query: 13  LSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           L   +G+G+K    L+K  I    N        LL Y P S+ID     KISEI++E   
Sbjct: 3   LKDIKGIGEKKIALLNKLGIFTVNN--------LLEYFPYSYIDTTKFKKISEITKEG-- 52

Query: 71  TITGYISQHSSFQLQKRRPYKIL----LNDGTGEITLLFF----YRKTEMLKNVFFEGRK 122
           + +  +   S  + +K+R  ++     +++     T+++F      K   + NV+     
Sbjct: 53  SYSYRLKIISLMENRKKRNIRVTKFLAMDEEMNYCTIVYFNSIFISKNLKINNVY----- 107

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             + G+ K L   + +  P     N  ++   +I   Y L  G+S     KII   L + 
Sbjct: 108 -EMYGRAKLLGKNVEIQSP--TMQNKANIIGSIIPQ-YHLCKGISNLDIVKIIQNLLKKN 163

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
               E I  ++L + +  S   A   IH P   KD E    A+ RLA+DE+   Q+++  
Sbjct: 164 SYFEEKIPSNILNELNLESYDNAIRNIHFP---KDNESFIRAKRRLAFDEIFYFQLSMKK 220

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +++  +  I   I  E       ++++ F  T SQ   + DI +DM+   +M R++QGDV
Sbjct: 221 LKRNNEDAIKFEIKDE---TFDFIKSLSFKLTNSQNKVLDDIFKDMTSDKQMNRLVQGDV 277

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G GKT+++ +AM   ++ G Q+V+MAP  ILA+QHYE  KK      I VE++ G++ ++
Sbjct: 278 GCGKTIISFVAMFNVIKNGFQSVLMAPTEILARQHYESAKKLFFKYNIKVELLVGSLKES 337

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            ++   E+I +G+  IIIGTHA+FQ+ + Y  L  VI DEQHRFGV+QRL L++K+  P 
Sbjct: 338 EKKVIREKIENGEVDIIIGTHAVFQEKVVYKNLGFVITDEQHRFGVKQRLLLSKKSKNPD 397

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+M+ATPIPRT+ L    D+DIS I E P+GR  +KT  +  N  +  +  +K  +SEG
Sbjct: 398 ILVMSATPIPRTVGLVMFCDLDISTIDELPSGRGKVKTYFVDENYEERYMNFIKKHISEG 457

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNG 540
           ++AY +CP ++E      +SV+  +  L E +   + I  IHG++  +DK+ +M  F+NG
Sbjct: 458 RQAYIVCPLVDESDTLELQSVINLYERLKERYFQDVEIEFIHGKLKPVDKDRIMKDFENG 517

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVGI+V +++I++I NAE FGL+QLHQLRGR+GRG   S CIL+ +   
Sbjct: 518 KIKVLVATTVIEVGINVPNSNIMVIYNAERFGLSQLHQLRGRIGRGNYESFCILVSNNK- 576

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S N   R+ ++ ++ DGF I+E+D   R  G+ILG +QSG  +F I   +    LL+ A 
Sbjct: 577 STNVKKRMDIMCSSNDGFYISEQDFLLRGYGDILGYRQSGEARFKILNIQKDYELLKSAI 636

Query: 661 KDAKHILTQDPDLTSVRGQSIR 682
           K    IL  D +      Q ++
Sbjct: 637 KYVDEILKHDFNFDKEENQVVK 658


>gi|289435154|ref|YP_003465026.1| ATP-dependent DNA helicase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171398|emb|CBH27942.1| ATP-dependent DNA helicase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 682

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/681 (34%), Positives = 386/681 (56%), Gaps = 25/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +S ++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLRD-LSLVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKINVGETVTISGKWD 119

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
           K + +I           N ++     +E VY L   L     +K    A       + E 
Sbjct: 120 KGRAQITASKVKIGAVENEEE-----LEGVYRLKGTLRNKTMQKYTRAAFDAYSSSIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  ++H P+   + +    AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPTNLLEKYQLMDRLEAVRVLHFPKNNDELK---QARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF+ TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFALTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   + V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDVTVGLLTSSVKGKRRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSVDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVTQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    ++ VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLERVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYRPGLMHGKLLPADKEQIMRDFNDKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+DA 
Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAV 649

Query: 665 HILTQDPDLTSVRGQSIRILL 685
           H++ ++  L + + + +  LL
Sbjct: 650 HMIFEENMLENKQYEKLVALL 670


>gi|322373680|ref|ZP_08048216.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C150]
 gi|321278722|gb|EFX55791.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C150]
          Length = 672

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 244/678 (35%), Positives = 383/678 (56%), Gaps = 44/678 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEE 67
           L +P++  +G G K +   +K+      +     DLL Y P  + D  ++ K I E+ + 
Sbjct: 4   LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYED--FKSKSIFELMDG 55

Query: 68  RIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYR-----KTEMLKNVFFEG 120
               ITG +   ++ Q    KR      +  G   I + FF +     K EM       G
Sbjct: 56  EKAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAISFFNQPYLVDKIEM-------G 108

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            ++ + GK  + K+ +  +    +    +D   P    VY +  G+S     K I  A  
Sbjct: 109 AEVAIFGKWDQKKSAVTGMK---VLAQVEDDMQP----VYHVAQGVSQAQLIKAIKAAFD 161

Query: 181 R--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              L +L E + + LL K       EA   +H P   KD      A  R  ++EL   Q+
Sbjct: 162 SGALNLLEESLPQVLLDKYRLMGRQEAVRAMHFP---KDLAEYKQALRRTKFEELFYFQM 218

Query: 239 ALLLMRKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            L +++ + K E  G+ I   E KI  KI   +PF  T++Q+ ++ +IL DM     M R
Sbjct: 219 NLQVLKAENKSETNGLAIAYDEAKIKDKIAA-LPFPLTEAQQRSLSEILADMKSGAHMNR 277

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT++A +AM  A  AG Q+ +M P  ILA+QHY+ ++      +++  ++T
Sbjct: 278 LLQGDVGSGKTVIASLAMYGAYTAGFQSALMVPTEILAEQHYQSLQGLFPELEVV--LLT 335

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
             M  A ++ AL +I  G+A +I+GTH+L QD++ Y+ L LVI DEQHRFGV QR    +
Sbjct: 336 SGMKAADKKVALSKIESGEAQMIVGTHSLIQDAVTYHSLGLVITDEQHRFGVNQRRIFRE 395

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K   P VL+MTATPIPRTL +T+ G++D+S I + PAGRKPI T  +   ++D V+  +K
Sbjct: 396 KGDNPDVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLTWIK 455

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVM 534
             L +  + Y+I P IEE +  + ++ V     L E F  ++++A++HGRM + +K+ +M
Sbjct: 456 GELEKDAQVYFISPLIEESEALDLKNAVALHQELTEFFGDSATVALMHGRMKNDEKDQIM 515

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+   ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L
Sbjct: 516 QDFKDRKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVL 575

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           + +P  +     R+  +  T DGF++AEEDLK R  GEI G +QSG+P+F +A      +
Sbjct: 576 VANPK-NDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYN 634

Query: 655 LLEIARKDAKHILTQDPD 672
           +LE AR+ A  I++ DP+
Sbjct: 635 ILEEARRVASQIVS-DPN 651


>gi|295397853|ref|ZP_06807916.1| DNA helicase RecG [Aerococcus viridans ATCC 11563]
 gi|294973898|gb|EFG49662.1| DNA helicase RecG [Aerococcus viridans ATCC 11563]
          Length = 683

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/663 (34%), Positives = 375/663 (56%), Gaps = 30/663 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG K +  L K+        +   DLL++ P  + D   +    E+ +    ++
Sbjct: 9   VTVLKGVGAKKAALLEKV------GISTVEDLLYHFPFRYEDVSVKSA-GELVDNTKASV 61

Query: 73  TGYISQHSSFQL----QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            G +      Q     + R  Y++ ++    E+  + F+ +  + KN+    ++I V GK
Sbjct: 62  KGVVVTEPVVQYFGRNRNRLTYRLAMDH---EVLQVIFFNQPYLKKNIQV-NQEIVVYGK 117

Query: 129 IKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVL 185
            +  K +I+ +    +F N QD        EA+Y L  GLS      +I +A+     ++
Sbjct: 118 FEAAKQQIVGIK---LFSNHQDEESGDNDFEAIYHLTQGLSTKSLTDLIKQAIDLYGDLV 174

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E + + L +K        A   IH P   ++      AR +L Y EL    + L   + 
Sbjct: 175 VELLPETLREKYQLMPHKLAIQQIHFPDSQEN---NRQARRQLKYQELFLYALKLQWRKL 231

Query: 246 QFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           Q ++   G  I  +    +  ++ IPF  T  Q++ + +I  D+ Q  +M R+LQGDVGS
Sbjct: 232 QQRRIANGAQILYDNDHLRDFIQTIPFELTAGQKAVVNEICADLRQPFQMNRLLQGDVGS 291

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA+I + A ++AG Q  +M P  ILA QHY  I  + + T   V ++TG+     R
Sbjct: 292 GKTVVAMICLVATIDAGFQGAMMVPTEILADQHYASISGFFEKTDYKVALLTGSTKTKAR 351

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--TAPH 422
           R+ L  + +G   ++IGTHAL QD +++  L +V++DEQHRFGV QR KL  K    AP+
Sbjct: 352 REILADLVNGDIDLLIGTHALIQDDVKFADLGMVVIDEQHRFGVNQRSKLVAKGEFKAPN 411

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL +T +GD+D+SK+ E P+GR PI+T  +  NR  +V E++ + + +G
Sbjct: 412 VLYMTATPIPRTLEITMMGDMDVSKLKEMPSGRIPIETSWVRHNRQAQVDEQIWLEVRKG 471

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNG 540
           ++ Y ICP I E +    ++    + +    F S  S+ ++HG+MS  +K+ VM++FKN 
Sbjct: 472 RQVYIICPLIGESEALEAQNAEHIYETYVAQFGSQFSVGLLHGQMSADEKDQVMEAFKNN 531

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L++TTVIEVG++V +A+ ++I +A+ FGLAQLHQLRGRVGRGE  S C+L+  P  
Sbjct: 532 DIQILVSTTVIEVGVNVPNATYMVILDADRFGLAQLHQLRGRVGRGEYASYCVLVADPR- 590

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           + N   R++++  + DGF ++++DL+ R  G+  G +QSG+P+F +A P     +LE+AR
Sbjct: 591 TDNGKQRMNIMVESTDGFYLSQQDLELRGAGDYFGTRQSGLPEFKVADPIEDGVILEVAR 650

Query: 661 KDA 663
           +DA
Sbjct: 651 EDA 653


>gi|152976221|ref|YP_001375738.1| ATP-dependent DNA helicase RecG [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152024973|gb|ABS22743.1| ATP-dependent DNA helicase RecG [Bacillus cytotoxicus NVH 391-98]
          Length = 682

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/664 (35%), Positives = 380/664 (57%), Gaps = 35/664 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     A+      LL + P  + D +    ++++  E  VT
Sbjct: 8   PVTDVKGIGTETSELLHEMGIYTVAH------LLEHFPYRYED-YAMKDLADVKHEERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFF----YRKTEMLKNVFFEGRKITV 125
           + G I      Q   ++  ++ +    G   IT + F    Y++   L  V      +T+
Sbjct: 61  VEGKIHSAPILQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDEV------VTI 114

Query: 126 TGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183
           TGK  + +  I +   H+  F   Q+     IE VYS+   L+V   ++ I +AL     
Sbjct: 115 TGKWDQHRQTISVSELHFGPFVRKQE-----IEPVYSVKGKLTVKQMRRFIAQALKEYGN 169

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + E +   LL +       EA   +H P   +D +    AR R  Y+E    Q+ +  +
Sbjct: 170 AIVELLPNGLLGRYKLLPRYEALRALHFPVNQEDLK---QARRRFVYEEFFLFQLKMQAL 226

Query: 244 RK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           RK + +   G   +V  +  ++ +  +PF  T +Q+  I +IL+DM    RM R+LQGDV
Sbjct: 227 RKIERENSQGTKKDVSVEELKEFIDALPFPLTGAQQRVIAEILKDMRSPYRMNRLLQGDV 286

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA IA+ AA  A  Q  +M P  ILA+QH++ + +   +  + VE++T ++  A
Sbjct: 287 GSGKTVVAAIALYAAKLAHYQGALMVPTEILAEQHFQSLTEIFSHFHLSVELLTSSVKGA 346

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            RR+ L ++  G+  I++GTHAL QD + ++KL LVI DEQHRFGV QR  L +K  +P 
Sbjct: 347 RRREILAKLEQGEIDILVGTHALIQDEVIFHKLGLVITDEQHRFGVAQRRVLREKGESPD 406

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  +   + +G
Sbjct: 407 VLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWTKHDMLDRVLNFVAKEVKKG 466

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540
           ++AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE VM+ F   
Sbjct: 467 RQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGEFQVGLMHGRLSAQEKEEVMEQFSEN 526

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  
Sbjct: 527 KVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK- 585

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIA 659
           S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE A
Sbjct: 586 SETGQERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADI-VHDYRALETA 644

Query: 660 RKDA 663
           R+DA
Sbjct: 645 RQDA 648


>gi|227550756|ref|ZP_03980805.1| DNA helicase RecG [Enterococcus faecium TX1330]
 gi|257896396|ref|ZP_05676049.1| ATP-dependent DNA helicase RecG [Enterococcus faecium Com12]
 gi|293379481|ref|ZP_06625625.1| ATP-dependent DNA helicase RecG [Enterococcus faecium PC4.1]
 gi|227180074|gb|EEI61046.1| DNA helicase RecG [Enterococcus faecium TX1330]
 gi|257832961|gb|EEV59382.1| ATP-dependent DNA helicase RecG [Enterococcus faecium Com12]
 gi|292642004|gb|EFF60170.1| ATP-dependent DNA helicase RecG [Enterococcus faecium PC4.1]
          Length = 678

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 233/665 (35%), Positives = 379/665 (56%), Gaps = 27/665 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           ++  VT+ G +      + F  +K R  ++++       ++  FF +    LK       
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILSE 109

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +I V GK      R  +     +   + D   P+     S+     VDL KK   E  + 
Sbjct: 110 EIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT- 166

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
             ++ E +  +L++K      A A   +H P   K+ E    A+ R+ ++E    Q+ L 
Sbjct: 167 --LIEENLPNNLVEKYRLLDRASAVRSMHFP---KNHEENHQAKRRVVFEEFFLFQMRLQ 221

Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++K  K E  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQG
Sbjct: 222 GLKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQG 281

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ V ++TG+  
Sbjct: 282 DVGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTVALLTGSTK 341

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+ LE++  G+ +++IGTHAL QD +++  L LVI DEQHRFGV QR  L +K   
Sbjct: 342 TKERRELLEKLERGEINVVIGTHALLQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWR 401

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  +  L+
Sbjct: 402 PDVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKELA 461

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538
            G + Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK
Sbjct: 462 RGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFK 521

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +   ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P
Sbjct: 522 DNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANP 581

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F IA      ++LE+
Sbjct: 582 K-NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEV 640

Query: 659 ARKDA 663
           AR++A
Sbjct: 641 AREEA 645


>gi|154493809|ref|ZP_02033129.1| hypothetical protein PARMER_03152 [Parabacteroides merdae ATCC
           43184]
 gi|154086422|gb|EDN85467.1| hypothetical protein PARMER_03152 [Parabacteroides merdae ATCC
           43184]
          Length = 698

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 242/670 (36%), Positives = 370/670 (55%), Gaps = 21/670 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG K +  L K      A  + + D+LFY P  +IDR    K++E++ +   + + G I
Sbjct: 14  GVGPKKAEILQK-----EAGISSYEDMLFYFPYKYIDRSRFYKVAEVTGDMPYIQMKGRI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    + R       DGTG I L++F     +L  +   G    V GK  +  +  
Sbjct: 69  LFFDTVGEGRTRRLIGKFTDGTGTIDLVWFKGINYVLDKIK-TGVDYIVFGKPTEFGHIY 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP     +  D     +   Y+    +         ++ L    +      LPE + 
Sbjct: 128 NIPHPDIDPLDQADKVANGLTPFYNTSEKMKKSFLNSRAIQNLQYTLLSGLNWTLPETLP 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
            D+L +    S  EA   +H P           A+ RL +DEL   Q+ +L      K +
Sbjct: 188 PDVLNRIRMMSFPEAIRNVHFPESVDKLR---KAQLRLKFDELFFIQLNILRTSNLRKLK 244

Query: 251 I-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           + GI     G       +  +PF  T +Q+  +++I  DM    +M R+LQGDVGSGKTL
Sbjct: 245 LRGIVFPSVGDYFNTFYKEYLPFELTNAQKRVVREIRADMGSGRQMNRLLQGDVGSGKTL 304

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL++M  AV+   QA +MAP  ILA QHY  +  + ++  I V ++TG+  +  R K L
Sbjct: 305 VALLSMLLAVDNHCQACMMAPTEILATQHYATVMGFLKDMDIKVALLTGSTKKKERNKIL 364

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427
             IA G+  ++IGTHAL ++++ +  L L I+DEQHRFGV+QR +L T+ A  PHVL+MT
Sbjct: 365 PAIASGEIQLVIGTHALIEETVVFSSLGLAIIDEQHRFGVEQRSRLWTKNAVVPHVLVMT 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S I E P GRKPI+TV    N+  ++ + L+  + +G++ Y 
Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTVHRYDNKKAQLYDFLRKEIGQGRQVYV 484

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P IE  ++ +++++ E F +  E F    + ++HG+M   DKE+ M  F +G  ++L+
Sbjct: 485 VYPLIEGSEKLDYKNLEEGFETFKEVFPEYKVCMVHGKMKAADKEAEMQKFISGEAQILM 544

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S C+L+    LS  +  
Sbjct: 545 ATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCVLVSSYKLSNETRK 604

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665
           RL ++ ++ +GF IAE DL+ R  G++ G +QSG    L IA       +L+ AR  A+ 
Sbjct: 605 RLEIMVSSNNGFEIAEADLRLRGHGDLEGTRQSGEGIDLKIANLAADGQILQYARDIAQD 664

Query: 666 ILTQDPDLTS 675
           +L +DPDL S
Sbjct: 665 VLNEDPDLLS 674


>gi|193215249|ref|YP_001996448.1| ATP-dependent DNA helicase RecG [Chloroherpeton thalassium ATCC
           35110]
 gi|193088726|gb|ACF14001.1| ATP-dependent DNA helicase RecG [Chloroherpeton thalassium ATCC
           35110]
          Length = 711

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 248/723 (34%), Positives = 383/723 (52%), Gaps = 45/723 (6%)

Query: 7   NPLF-APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           N  F A L+  +GVG K +    K      A    + DLL Y P  ++DR     I  +S
Sbjct: 5   NEFFRAELTYLKGVGPKRAAAFEK------AGIKNYEDLLNYFPRRYLDRTQIKSIGALS 58

Query: 66  EERIVTITGYISQ-HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           E    T+ G + Q        K + +   L D TG I L++F +    L  +  EG  + 
Sbjct: 59  EGETATLVGEVRQIRFDGANWKTKRFIASLYDKTGRIDLVWF-QGANYLSKMLREGDALA 117

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQD-------------VNFPLIEAVYSLPT-----GL 166
           V GKI        ++HP +   N  +              N   I  +YSLP      GL
Sbjct: 118 VHGKIGFFNGTPQLMHPDFDKLNGAERSDDDDLKNDFELFNTGKIVPLYSLPEALKRGGL 177

Query: 167 SVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225
           +  + ++I+   L + L  + E +   + +      +A A+  IH P      E    A+
Sbjct: 178 NSRIMRRIVRNLLDKSLGHIEENLPASICENYRLMPLAMAYEQIHFPASP---ELLEQAK 234

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVE-----GKIAQKILRNIPFSPTKSQESA 280
            R+ + EL   Q  L  +RK    ++   ++ E     G+   K+ +NIPF  T +Q+  
Sbjct: 235 FRMKWTELFYMQ-TLFAVRKC---DVETSVSAEKFETVGEFTNKLFKNIPFEMTGAQKEV 290

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I++I +D+   ++M R++QGDVGSGKTLVA+ AM  A++ G Q   MAP  ILA QH+  
Sbjct: 291 IREIRRDLKSGSQMNRLVQGDVGSGKTLVAIFAMMIALDNGAQCAFMAPTEILATQHFLT 350

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           +KK+ +   + + ++ G   +A R + L  I  G+  I +GTHAL +  + +  L L ++
Sbjct: 351 LKKFLEPLGVKIALLVGKQRKALRTEILAGIESGETQITVGTHALIEGKVVFENLGLAVI 410

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQHRFGV QR  L  KA  PH+LLMTATPIPRTL +T  GD+D+S I E P  RKPI T
Sbjct: 411 DEQHRFGVMQRKALQDKAVNPHILLMTATPIPRTLTMTLFGDLDVSIINEMPKNRKPIVT 470

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSI 518
            +   + ++EV E +K  + +G++AY + P +EE ++ +  +  E    L +       +
Sbjct: 471 KLRHESEVEEVYEFIKSEIRKGRQAYIVYPLVEESEKMDLAAATEAHEELKDTVFDMCRV 530

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            +IHG++   +KE  M++F+NG  ++L+ TTVIEVG+DV +A++++I++AE FGLAQLHQ
Sbjct: 531 GLIHGQLFPYEKEDEMEAFRNGKSRILVGTTVIEVGVDVPNATVMVIQHAERFGLAQLHQ 590

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRGE  S C L+Y   L+ ++  RLS ++ + DGF ++E D + R  G ILG +Q
Sbjct: 591 LRGRVGRGEAQSYCFLVY-SKLTPDAKERLSAMEESTDGFRLSEIDARLRGAGNILGTEQ 649

Query: 639 SGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
           SG+   L +A       +L  AR+ A  ++  D  L     +  R   YL  Y++ ++  
Sbjct: 650 SGIISDLKVANLNEDSHILASAREAAFTLVRDDKQLRKPENKPARD-YYLKHYHDRYKLA 708

Query: 698 RAG 700
             G
Sbjct: 709 DVG 711


>gi|332300534|ref|YP_004442455.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177597|gb|AEE13287.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 697

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 238/690 (34%), Positives = 381/690 (55%), Gaps = 23/690 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   G+G K +  +++ ++        + DLL+Y P  + DR     I  ++   
Sbjct: 4   LTTPLADLPGLGTKRAQLIAEELDLHT-----YRDLLYYIPYRYADRRVIYPIGTLTPSM 58

Query: 69  I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V + G +   S+  L ++      L D TGE+ LL +++    ++     G K  V G
Sbjct: 59  TEVQVEGILQPFSAPSLGRKSNLSARLMDDTGEL-LLVWFKGHNYIQRALTPGCKYIVYG 117

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS---VD-LFKKIIVEALSRLP 183
           K++   N++ + HP     +    +    + VY     L    +D  F    ++ L + P
Sbjct: 118 KLQLFNNQLQITHPEIKPADKPSPSVGGYQPVYRTTERLKRARIDSAFLGRYIDQLLQSP 177

Query: 184 V--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL- 240
              +PE + + L+  +    +  A   IH+P   +  E    A+ RL YDEL    + L 
Sbjct: 178 YFSIPETLSEPLVAHRHLAPLQTAIRWIHHP---QSVEQAQVAKFRLKYDELFYLNLYLR 234

Query: 241 -LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            L + ++ + E G  ++  GK+   +   +P+  T +Q+  +++I +D +   +M R+LQ
Sbjct: 235 RLAVMQRMRYE-GYRLDQVGKLFNGLYYALPYDLTGAQKRVLREIRRDTNSGAQMNRLLQ 293

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVAL AM  AV+ G QA ++AP  ILAQQHYE I ++ +   + + ++TG+ 
Sbjct: 294 GDVGSGKTLVALFAMLLAVDNGYQACMLAPTEILAQQHYETISEFVEGLDVSIALLTGSS 353

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA- 418
               RR+ L  +A+G   I+IGTHA+ ++ + ++KL + ++DEQHRFGV QR KL  K  
Sbjct: 354 KTRERRETLSALANGSLSILIGTHAILEERVAFHKLGMAVIDEQHRFGVAQRSKLWGKNV 413

Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            T PH+L+M+ATPIPRTL +T  GD+++S I E P GRKPI TV I   +   +   +  
Sbjct: 414 LTLPHILVMSATPIPRTLAMTMYGDLEVSVIDEMPPGRKPITTVQIAEKKKKTLYSLINE 473

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDS 536
            ++ G++ Y + P IE  +ES+F ++   +    E F    +  +HGR+S  DK   M+ 
Sbjct: 474 TINRGQQIYVVFPMIEGTEESDFANLEVGYKEYVERFGEERVVYVHGRLSAEDKAEQMER 533

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G   +L+ATTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ 
Sbjct: 534 FASGEVPILLATTVIEVGVNVPNATVMVINDAQRFGLAQLHQLRGRVGRGGDKSYCILVT 593

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSL 655
              L  ++  R+  +  T+DGF IAEED++ R  G++ G +QSG +    IA P    +L
Sbjct: 594 PDDLQGDAKQRIDTMVATQDGFKIAEEDMRLRGFGQMEGTRQSGTLAGIRIADPVADYNL 653

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           L + R D  ++L   P L     +  RI L
Sbjct: 654 LALTRLDVNYLLDYSPLLDKPDTELYRINL 683


>gi|116513187|ref|YP_812094.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116108841|gb|ABJ73981.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 681

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 235/643 (36%), Positives = 363/643 (56%), Gaps = 26/643 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100
           DLL Y P  + D   R  + E+ +    TI G +   ++ Q    KR      + +G   
Sbjct: 46  DLLLYFPFRYEDFASR-SVFELVDGEKATIIGTVVTPANVQYYGFKRNRLSFKIKEGEAV 104

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           + + FF +    L N    G++I V GK ++ K +++ +    +     D     +E VY
Sbjct: 105 VAVSFFNQP--YLANKVEVGKEIAVYGKWEQAKQQLMGMK---VVAQVDDG----LEPVY 155

Query: 161 SLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
            L  G+      K+I +      L  LPE + + L++K    +  EA   +H P   +D 
Sbjct: 156 HLTAGMKQSQLVKVIHQVFESGLLSELPENLPEFLIEKYRLMNRQEAVLAMHFP---EDM 212

Query: 219 EWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           E    A  R+ ++EL   Q+ L  L  K+     G+ +  E +   K + ++PF  T  Q
Sbjct: 213 EAHKQALRRVKFEELFMFQLKLQALKNKEKSGRAGLQVIFEQEEIDKKISDLPFELTGGQ 272

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             A+ +IL DM     M R+LQGDVGSGKT+VA ++M AA  A  QA IM P  ILA+QH
Sbjct: 273 SRALTEILDDMKSPYHMNRLLQGDVGSGKTVVASLSMYAACLANFQAAIMVPTEILARQH 332

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           +  ++      QI   ++   +  A RR+ L  +A G  H+++GTHAL Q+ + +Y L L
Sbjct: 333 FANLQALFPELQI--SLLVSGLKAAERREILADLASGHTHMVVGTHALIQEGVDFYNLGL 390

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL+MTATPIPRTL +T+ GD+D+S I E P GR+P
Sbjct: 391 VITDEQHRFGVNQRKILREKGQNPDVLMMTATPIPRTLAITAFGDMDVSIIDELPKGRQP 450

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-- 515
           I T  +   +  EV+  +K  ++   + Y+I P IEE +  + ++    F  L+++F   
Sbjct: 451 ITTRWVKHEQFSEVLSWVKGEVANDSQVYFISPLIEESETLDLKNAEALFAELNDYFGLF 510

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I ++HG+M + +K+ +M  FK     +L++TTVIEVG+DV +A+I++I +A+ FGL+Q
Sbjct: 511 AKIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVIMDADRFGLSQ 570

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG + S  IL+ +P  S +   R+ ++  T++GF++AEEDLK R  GEI G
Sbjct: 571 LHQLRGRVGRGTKKSYAILVANPK-SDSGKQRMKIMTETQNGFVLAEEDLKMRGSGEIFG 629

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD---PDLTS 675
           ++QSG+P+F+ A      ++LE+AR++A  I  +    PDL +
Sbjct: 630 LRQSGLPEFIAADLVNDYNILEVARQEAVEIFKKADEFPDLIA 672


>gi|258645745|ref|ZP_05733214.1| ATP-dependent DNA helicase RecG [Dialister invisus DSM 15470]
 gi|260403114|gb|EEW96661.1| ATP-dependent DNA helicase RecG [Dialister invisus DSM 15470]
          Length = 697

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/638 (34%), Positives = 359/638 (56%), Gaps = 15/638 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99
           DL+ Y+P  + D      ++++S E    + G + +    ++  RR   IL   L DGTG
Sbjct: 50  DLISYYPRRYEDWTRITPMADLSYEMETAVYGTVVEIR--EVHPRRNLSILTVTLVDGTG 107

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-FPLIEA 158
            + L++F +  +  K  F  G  I   GKI+    +  + +       +++++ F  +  
Sbjct: 108 AVNLVYFNQPWK--KEQFAYGSNILAYGKIEYNYRKWQISNADTEAVAAEELHAFKKLVP 165

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           VY L  G+     + +I  A+     + E +  D+L ++       A   +H+P     +
Sbjct: 166 VYPLTEGIRASQMRAMIRFAIDHAEGIRENLPADVLVREHLMGRMAAIRGMHDP---AGW 222

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQ 277
           E    AR R A++EL   Q  + L+RK+ + + +GI     G +  ++++  PF+ T+ Q
Sbjct: 223 EEQRAARRRTAFEELFFMQAGIQLLRKRRETDNVGIKCMPSGNLVHEVMKKFPFALTEGQ 282

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +S  +DI   M     M R++QGDVGSGKT +A++A+   VE G Q  +MAP  +LA QH
Sbjct: 283 KSVFRDIEDSMEGIVPMQRLVQGDVGSGKTAIAILALTKIVENGYQGALMAPTEVLAAQH 342

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           ++  ++  +   +    ++G+   A R++ LE++  G  HI+IGTHAL ++++ +  L L
Sbjct: 343 FKTFQQVFKGMPVKTAYLSGHTKAAERKEILEQLKDGSIHILIGTHALIEENVVFSALGL 402

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV+QR  L  K  +PHVL+MTATPIPRT+ L+  GD+D+S I   P GR P
Sbjct: 403 VITDEQHRFGVKQRQALESKGKSPHVLIMTATPIPRTMALSVYGDLDVSFIKGMPPGRHP 462

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--T 515
           +KT ++  + +  +   +K  +  G +AY +CP +E+ ++ +  + V  + +L +H    
Sbjct: 463 VKTYVVGSHMLQRIFRFMKKEMESGHQAYVVCPLVEQSEKQDLAAAVSVYENLRDHVFPQ 522

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HGRM + +KE VM+ F+ G  KLL+AT+VIEVG++V DA+++ +  A+ FGL+Q
Sbjct: 523 FGVGLVHGRMKNAEKEQVMEDFRKGKFKLLVATSVIEVGVNVPDATVMFVYGADRFGLSQ 582

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG+E + C+ LY    ++ +  R+ ++    DG L+AE+DL  R  GE  G
Sbjct: 583 LHQLRGRVGRGKEQAYCV-LYTDNQNETTQLRMKLMCEIRDGALLAEKDLLLRGAGEFFG 641

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             Q GMP    A       LLE+A+ DAK  + +  D 
Sbjct: 642 YHQHGMPDLKAADIVRDLPLLELAKHDAKEAVDKGLDF 679


>gi|319955243|ref|YP_004166510.1| ATP-dependent DNA helicase recg [Cellulophaga algicola DSM 14237]
 gi|319423903|gb|ADV51012.1| ATP-dependent DNA helicase RecG [Cellulophaga algicola DSM 14237]
          Length = 701

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 256/691 (37%), Positives = 378/691 (54%), Gaps = 41/691 (5%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P++  +GVG   +  L   +         + DL+   P  +ID+    KI+ + +
Sbjct: 4   NFLQTPIAYLKGVGPNRASTLQSELGI-----QTYQDLINLFPHRYIDKTQYYKINLLQQ 58

Query: 67  ERI-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               V + G I+   S   +K         D TG++ L++F  +  + +N+      + V
Sbjct: 59  NTSEVQVVGKITHIKSVAQKKGNRLVATFLDDTGKMELVWFRGQKWIRENLKLNVPYV-V 117

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLS---------VDLFKKII 175
            GK         M HP        +    + ++ VY     LS           L ++I 
Sbjct: 118 FGKTNFYNGTFSMPHPEMELLVDHEKGLKIYMQPVYPSTEKLSNKGITNRVLSKLIQQIF 177

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           VE   +     E +   ++++    S +EA   IH P   K+ E  + A+ RL ++EL  
Sbjct: 178 VELNGKFT---EALSPKIIEELHLISKSEAMFNIHFP---KNQELLAKAQFRLKFEELFY 231

Query: 236 GQIALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNR 293
            Q+ L+      KK I G P +  G I      N +PF  T +Q+  +K+I  D+    +
Sbjct: 232 IQLQLIAKNMLHKKRIKGFPFDKVGTIFTDFYNNHLPFELTNAQKRVLKEIRSDLGSNAQ 291

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VAL+AM  A++ G QA +MAP  ILA QH+  I++  +   I V 
Sbjct: 292 MNRLLQGDVGSGKTIVALMAMLLAIDNGFQACLMAPTEILANQHFVGIQELLEGVGITVS 351

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG++ ++ R+   E++  G+  I+IGTHAL +D +QY  L L IVDEQHRFGV QR K
Sbjct: 352 LLTGSVKKSARKVIHEQLESGELQILIGTHALLEDKVQYKNLGLAIVDEQHRFGVAQRSK 411

Query: 414 LTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L  K T  PHVL+MTATPIPRTL ++  GD+DIS I E P GRKPIKTV    +R D   
Sbjct: 412 LWHKNTIPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPIKTV----HRYDS-- 465

Query: 473 ERLKVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHG 523
            RLKV       + +G++ Y + P I+E +  +++ +++ + S+   F      I+I+HG
Sbjct: 466 NRLKVFQFIREEIKKGRQIYVVYPLIQESEVLDYKDLMDGYESIVRDFPQPEYQISIVHG 525

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M  +DKE  M  F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRV
Sbjct: 526 QMKPVDKEYEMQRFVKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRV 585

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG + S CIL+    LS  + TRL  +  T DGF IAE DLK R  G+++G +QSGM  
Sbjct: 586 GRGADQSFCILMTSFKLSTEAKTRLETMVRTNDGFEIAEVDLKLRGPGDLMGTQQSGMLN 645

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
             IA     + +L+ AR  A  +L  DP L 
Sbjct: 646 LKIADIVRDNDILKTARYYALQLLKDDPTLA 676


>gi|87302807|ref|ZP_01085618.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 5701]
 gi|87282690|gb|EAQ74648.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 5701]
          Length = 862

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 223/651 (34%), Positives = 358/651 (54%), Gaps = 31/651 (4%)

Query: 47  YHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL----NDGTGEIT 102
           ++P  ++D     +I E+      TI   + +  +F    R P  ++L    +D TG + 
Sbjct: 195 HYPRDYLDYANLVRIRELVPGSTATIVATVQRSHAFA-SPRNPRLVILELQLHDITGRLR 253

Query: 103 LLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP 154
           L  F+           +  +  F  G  +  +G +++      +  P     +S   N P
Sbjct: 254 LSKFFAGRRFSSPGWLKAQQRQFPPGCSVAASGLVRQTPYGPTLQDPLLEVLDSP--NTP 311

Query: 155 L-------IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207
           +       +  VY+L  GL  +  ++ I   L+      + +   L +++     A A+ 
Sbjct: 312 VRSRQIGRLVPVYALTEGLGAERLRQAIQTVLTAAAHWGDPLPAALRRQEGLQDRATAWR 371

Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV---EGKIAQK 264
            +H+P    D   +   R RL +DE L  Q++LL  R Q  +    P+ +   +  +   
Sbjct: 372 GLHDPADRDDLRAS---RHRLVFDEFLLLQLSLLQRRAQLARRPARPLRLPRGQSSLMAS 428

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
            L  +PF  T++Q   + DI  D+ Q+  M R+LQGDVGSGKT+VA+ A+  A+EAG Q 
Sbjct: 429 FLELLPFQLTEAQRRVLADIQADLEQEQPMARLLQGDVGSGKTVVAIAALLVAIEAGCQG 488

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  +LA+QH   + ++     +   ++TG+ P   RR+ L+ +A+GQ  +++GTHA
Sbjct: 489 ALMAPTEVLAEQHARKLGEWLSQLHVSTALLTGSTPAGRRRQLLQDLANGQLQLLVGTHA 548

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L +D + + +L LV+VDEQHRFGV+QR +L  K   PH+L MTATPIPRTL L+  GD++
Sbjct: 549 LLEDPVAFARLGLVVVDEQHRFGVRQRDRLMGKGLQPHLLTMTATPIPRTLALSVHGDLE 608

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           +S+I   P GR PI+T ++   +  E  E ++  ++ G++AY + P +EE +  + RS V
Sbjct: 609 VSQIDGLPPGRTPIRTRLLRGGQRQEAYELIRAEVALGQRAYVVLPLVEESENLDLRSAV 668

Query: 505 ERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
                L E       + ++HGRM    K+  +++F +G C +L++TTV+EVG+DV +AS+
Sbjct: 669 TVHQQLQEEIFPDLRVGLLHGRMPSPRKQEAINAFASGHCDVLVSTTVVEVGVDVPEASV 728

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++IE+AE FGLAQLHQLRGRVGRG   S C+L+     +  +  RL +L  + DGF IAE
Sbjct: 729 MVIEHAERFGLAQLHQLRGRVGRGAAASHCLLINDGK-AGQAQQRLELLVRSSDGFEIAE 787

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            DL+ R  G++LG +QSG+P   +A       +LE AR  A+ +L  DPDL
Sbjct: 788 MDLQLRGPGQVLGTRQSGLPDLALASLSDDGDVLEQARSLARRLLELDPDL 838


>gi|154686003|ref|YP_001421164.1| ATP-dependent DNA helicase RecG [Bacillus amyloliquefaciens FZB42]
 gi|154351854|gb|ABS73933.1| RecG [Bacillus amyloliquefaciens FZB42]
          Length = 682

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 234/651 (35%), Positives = 371/651 (56%), Gaps = 28/651 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF----QLQKRRPYKILLNDGT 98
           DLL Y P  + D   R  + E+  E  VT+ G +    S     + + R  +++L+  G 
Sbjct: 33  DLLNYFPYRYDDYELR-DLEEVKHEERVTVEGKVHSEPSLTYYGKKRNRLTFRVLV--GN 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             IT + F R    LK     G  +T++GK  K +  + +        N        IE 
Sbjct: 90  YLITAVCFNRP--YLKKKLTLGSVVTISGKWDKHRQTVSVQE----LKNGPHQEDKSIEP 143

Query: 159 VYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VYS+   ++V + ++ I EAL   L    + + + L  +   P    A   +H P   + 
Sbjct: 144 VYSVKENVTVKMMRRFIKEALQHHLDSAADPLPEKLRIRYKLPDYKHALQTMHQPETRES 203

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKS 276
            +    AR R  Y+E L  Q+ +   RK  +++  GI      +       ++PFS T +
Sbjct: 204 LQ---QARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHVFPAEKLAAFTDSLPFSLTTA 260

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   +++I  DM+   RM R+LQGDVGSGKT VA IA+ AA+ +G Q  +M P  ILA+Q
Sbjct: 261 QTRVLREITADMTSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ 320

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H + +     N  + + ++T ++    RR+ LER+A G+  I++GTHAL QD +++  L 
Sbjct: 321 HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALS 380

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV+QR KL  K   P VL MTATPIPRTL +T  G++D+S I E PAGRK
Sbjct: 381 LVITDEQHRFGVEQRKKLKNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRK 440

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I+T  +  + ++ ++  ++  L +G++AY ICP IEE  + + ++ ++ +N L + +  
Sbjct: 441 QIETYWVKHDMLERILAFIEKELKQGRQAYVICPLIEESDKLDVQNAIDVYNMLSDVYRG 500

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             ++ ++HG++   +K+ VM  F    C++L++TTV+EVG++V +A+I++I +A+ FGL+
Sbjct: 501 KWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS 560

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG+  S CIL+  P  S+    R+ ++  T DGF ++E+DL+ R  G+  
Sbjct: 561 QLHQLRGRVGRGDHQSFCILMADPK-SETGKERMRIMSETNDGFELSEKDLELRGPGDFF 619

Query: 635 GIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILT-----QDPDLTSVRGQ 679
           G KQSGMP+F +A   +HD   LE AR+DA ++++     +D +   +RGQ
Sbjct: 620 GKKQSGMPEFKVADM-VHDYRALETARQDAANLVSSEAFWKDDEYRMLRGQ 669


>gi|319946374|ref|ZP_08020612.1| DNA helicase RecG [Streptococcus australis ATCC 700641]
 gi|319747527|gb|EFV99782.1| DNA helicase RecG [Streptococcus australis ATCC 700641]
          Length = 671

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 231/632 (36%), Positives = 373/632 (59%), Gaps = 21/632 (3%)

Query: 43  DLLFYHPSSFIDRHYRPK-ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           DLL Y P  + D  ++ K + ++ +     ++G ++  ++ Q    +  ++      GE+
Sbjct: 31  DLLLYFPFRYED--FKSKNVLDLEDGEKAVVSGLVATPANVQYYGYKRNRLRFTIKQGEL 88

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            L   +     L +    G+ + V GK  K K  +  +    +    +D     ++ VY 
Sbjct: 89  VLAVSFFNQPYLADKIELGQTVAVFGKWDKAKGALTGMK---LLAQVEDD----LQPVYR 141

Query: 162 LPTGLSVDLFKKIIVEALSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           L  G+S     K+I  A       +L E + + L+ K    S  +A   +H P   KD E
Sbjct: 142 LSQGVSQSALVKVIKTAFEAGLDQLLEENLPQILMDKYHLLSRRQAVRAMHFP---KDLE 198

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQE 278
               A  R+ ++ELL  Q+ L +++++ +    GI ++ + K  + +  ++PF+ T++QE
Sbjct: 199 EYKQALRRVKFEELLFFQLQLQVLKEENRSVGQGIVLDWDEKKLKALQASLPFALTEAQE 258

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            ++ +IL DM     M R+LQGDVGSGKT+VA +AM AAV AG QA +M P  ILA+QH 
Sbjct: 259 KSLSEILADMRSPYHMNRLLQGDVGSGKTVVAGLAMYAAVTAGKQAALMVPTEILAEQHL 318

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +     N +I+  ++TG++  A RR+ LE I  GQ  +++GTHAL Q+ + ++ L LV
Sbjct: 319 QSLTSLFSNLRIL--LLTGSLKAAERRERLELIQTGQVDLVVGTHALIQEGVHFHDLGLV 376

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DEQHRFGV QR  L +K   P VL+MTATPIPRTL +T+ GD+D+S I + PAGRK I
Sbjct: 377 IIDEQHRFGVAQRRILREKGQNPDVLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKEI 436

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--S 516
            T  +   +++ V++ L   + +G +AY I P IEE +  + ++ +     L  +F   +
Sbjct: 437 ITRWVKHQQLNLVLDWLVKEIEKGSQAYVISPLIEESEALDLKNAIALEEELIAYFGDRA 496

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA++HG+M   +KE++M +FK G   LL++TTVIEVG++V +A+++II +A+ FGL+QL
Sbjct: 497 RIALLHGKMKGEEKEAIMQAFKQGEIDLLVSTTVIEVGVNVPNATVMIIMDADRFGLSQL 556

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG++ S  +L+ +P  +++   R+ ++  T +GF++AEEDLK R  GEI G 
Sbjct: 557 HQLRGRVGRGDKQSYAVLVANPK-TESGKCRMKIMTETTNGFVLAEEDLKLRGSGEIFGT 615

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +QSG+P+F +A       +LE ARK A  ++T
Sbjct: 616 RQSGIPEFQVANLIEDYPILEEARKVAVQVVT 647


>gi|229117341|ref|ZP_04246719.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock1-3]
 gi|228666241|gb|EEL21705.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock1-3]
          Length = 682

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 232/663 (34%), Positives = 374/663 (56%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GSVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSMVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+     LL +       EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPD----GLLNRYKLLPRYEALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSTELQEFIDALPFPLTGAQHRVVDEILKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AA  A  Q  +M P  ILA+QHY+ + +      + VE++T ++  A 
Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSRFGMTVELLTSSVKGAR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L R+  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILARLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|159896821|ref|YP_001543068.1| ATP-dependent DNA helicase RecG [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159889860|gb|ABX02940.1| ATP-dependent DNA helicase RecG [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 832

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 253/717 (35%), Positives = 385/717 (53%), Gaps = 66/717 (9%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           P+   L T +G+G   +   +K+            DLL++ P  + D   R +I ++   
Sbjct: 107 PIDTLLKTLQGIGPSTARSFAKL------GVHTLEDLLYHVPHRYDDFSKRKQICDLVVG 160

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
              T+   +    SF  + R+  +I + D TG +   +F R T M K  F EG +I ++G
Sbjct: 161 ETDTVIVTVDAIKSFNAKGRQGVEITVGDDTGVLKASWF-RGTWMAKQ-FREGMRIVLSG 218

Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII---VEALSRLP 183
           K+   +    M +P +  F     V+   +  V+ L  GL     +++I   V+A++  P
Sbjct: 219 KVSMFREMKSMSNPQWEPFVEDDLVHTGRLVPVHPLTKGLQDRNARQVIKRVVDAVT--P 276

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            L + +  +L ++     +  A + IH P     +     AR+RL +DE L  Q+ +L  
Sbjct: 277 TLSDPLPIELRERAGLLPLGVAISQIHFP---DSWAMVQRARQRLGFDEFLYIQLGVLQR 333

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ ++   G PI     I    L ++PF+ T +Q     +I +D+ +   M R++QGDVG
Sbjct: 334 KRLYQGVQGQPIAFNQAIHDAYLSSLPFALTNAQTRTFNEICRDLERPVPMTRLVQGDVG 393

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII------------ 351
           SGKT VA  A+  AV AG Q  +MAP  ILA+QHY  +KK   N +I             
Sbjct: 394 SGKTAVAAAALVQAVAAGFQGAMMAPTEILAEQHYRGLKKLLANVKIPGRETNSNGDWRD 453

Query: 352 -------------------------------VEIITGNMPQAHRRKALERIAHGQAHIII 380
                                          V ++TG++    RR+AL+ IA G+  III
Sbjct: 454 ELDQEKRNRLAQIKQLLMLADEPEPEPGGIRVALLTGSLKARQRREALKLIADGEVDIII 513

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTHAL Q ++ Y  L L +VDEQHRFGV+QR  L +K   PH+L+MTATPIPR+L LT  
Sbjct: 514 GTHALIQANVDYQALGLAVVDEQHRFGVEQREALKRKGFNPHLLVMTATPIPRSLALTIY 573

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
           GD+D+S I E+P GR+PI+T  I      +  + ++  ++ G++A+ ICP +E  EK E 
Sbjct: 574 GDLDVSVIDERPPGRQPIRTKWISSGERSKAYKHMRKEIAAGRQAFVICPLVEESEKLED 633

Query: 499 NFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              ++VE+ +  HE F    + +IHGRM+  +K+++M  F++    +L+AT V+EVGID+
Sbjct: 634 VKSAIVEQEHLQHEIFPDLKVGLIHGRMTSSEKDTIMAQFRDREFDILVATAVVEVGIDI 693

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            +A+ I+IE AE FGLAQLHQ RGRVGRG   S C+L+     +  +  RLS ++ +EDG
Sbjct: 694 PNATTIMIEGAERFGLAQLHQFRGRVGRGSHQSFCVLVSDKEDNDVTVARLSSMEESEDG 753

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDL 673
           F +AE DL+ R  GE  GI+QSG P   +AQ  L D+ LL  AR +A+ IL  DP+L
Sbjct: 754 FRLAEIDLELRGPGEFFGIRQSGTPDLKVAQ--LTDTRLLHAARIEAERILKLDPEL 808


>gi|94989151|ref|YP_597252.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS9429]
 gi|94993043|ref|YP_601142.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS2096]
 gi|94542659|gb|ABF32708.1| ATP-dependent DNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94546551|gb|ABF36598.1| ATP-dependent DNA helicase recG [Streptococcus pyogenes MGAS2096]
          Length = 671

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 248/672 (36%), Positives = 377/672 (56%), Gaps = 32/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D   +     +  E+
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 57  AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL---SRLP 183
           GK    K+ I  +    +    +D   P    VY +  G+S     K I  A    + L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEIDAHLE 166

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            L E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L ++
Sbjct: 167 -LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVL 222

Query: 244 RKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           + + K E  G+PI       +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDV
Sbjct: 223 KAENKSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDV 282

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++   +  I   I+T  M  A
Sbjct: 283 GSGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAA 340

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P 
Sbjct: 341 VKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD 400

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L + 
Sbjct: 401 VLMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKD 460

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540
            + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K++ M  FK+ 
Sbjct: 461 AQVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDARMQDFKDK 520

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  
Sbjct: 521 KSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK- 579

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           + +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR
Sbjct: 580 TDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEAR 639

Query: 661 KDAKHILTQDPD 672
           K +  I++ DP+
Sbjct: 640 KVSAAIVS-DPN 650


>gi|149928265|ref|ZP_01916508.1| ATP-dependent DNA helicase RecG [Limnobacter sp. MED105]
 gi|149822994|gb|EDM82236.1| ATP-dependent DNA helicase RecG [Limnobacter sp. MED105]
          Length = 703

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 231/628 (36%), Positives = 342/628 (54%), Gaps = 44/628 (7%)

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITL--LFFYRKTEMLKNVFFEGRKITVT 126
           + T+ G     +  Q   R+  ++ + DG   + L  L FY     L+    EG +I + 
Sbjct: 67  LATVVG-----TEVQYHPRKQLRVWVEDGDTTLLLRWLHFYPG---LQQKLSEGTRIQIN 118

Query: 127 GKIKKLKNRIIMVHPHYIFH----------------NSQDVNFPLIEAVYSLPTGLSVDL 170
           G+I++      MVHP                     NS  V  P+  +   L        
Sbjct: 119 GQIRQGYGTFEMVHPTVKIAPPGTLDASINPIAPPTNSSSVLEPVYPSTGQLKQSDWHRW 178

Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN---PRKAKDFEW-TSPARE 226
            KK+   A   +  LP     +L +K        A   +H    P +  D    T PA  
Sbjct: 179 MKKL--PAACFIDTLP----TNLCKKHKLLPWPTALQTLHGQAKPEELYDLNLRTHPAWT 232

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVE----GKIAQKILRNIPFSPTKSQESAIK 282
           R+  DELLA Q+ L   R+Q   E   P+  E      +  + +  +PF  T +QE A +
Sbjct: 233 RVKVDELLAQQLLLREYRQQRTLEKASPLKAEKITKTSLVCQFMAQLPFQLTGAQERACR 292

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I +D++    M R+LQGDVGSGKTLVA +A   A+E G QA I+AP  +LA QH+  + 
Sbjct: 293 EIFEDLAHPYPMQRLLQGDVGSGKTLVAALACLRAIENGKQAAILAPTEVLAAQHHHKLA 352

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
                  +    + G M ++ + + L+ +A G+  +IIGTHAL QD +Q+  L LV+VDE
Sbjct: 353 PLFDAVGVRCAKLQGAMKKSEKDRTLKALAAGEIDVIIGTHALVQDHVQFQSLALVVVDE 412

Query: 403 QHRFGVQQRLKLTQKATAPHV---LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           QHRFGV QRL L  KA+  H+   L+M+ATPIPRTL  T L D+ +S + EKP GRKPI 
Sbjct: 413 QHRFGVAQRLSLIAKASDGHLAHQLMMSATPIPRTLAQTYLSDLAVSSLDEKPPGRKPII 472

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSI 518
           T ++   + +++I  ++  +++G++ YW+CP IEE +  + ++    +  L E   T  I
Sbjct: 473 TKLLSQKKREQLISAIEGEINKGQQVYWVCPLIEESETLDLQAAQATYADLCEQLPTRRI 532

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++HG+  +  K++ M +F  G   LL++TTVIEVG+DV +AS+++I+ AE FGLAQLHQ
Sbjct: 533 GLLHGKQDNKLKQATMAAFSAGELDLLVSTTVIEVGVDVGNASLMVIDQAERFGLAQLHQ 592

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG   S C+LLY  PLS  S  RL  +  ++DGF +AE+DL+ R  GE+LG +Q
Sbjct: 593 LRGRVGRGSVQSVCVLLYGGPLSNTSKLRLKAMHESDDGFYLAEKDLEIRGPGELLGKRQ 652

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHI 666
           SG+P    A P +   LLE+AR  A+ +
Sbjct: 653 SGLPMMRYADPLVDKDLLELARTLAQQM 680


>gi|167464130|ref|ZP_02329219.1| ATP-dependent DNA helicase RecG [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384318|ref|ZP_08058016.1| ATP-dependent DNA helicase RecG-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150820|gb|EFX44257.1| ATP-dependent DNA helicase RecG-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 681

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 223/632 (35%), Positives = 364/632 (57%), Gaps = 18/632 (2%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTGE 100
           L+ Y P  + D   R  +SE+ +   +T+ G +      Q   R+     K++++     
Sbjct: 34  LIAYFPFRYEDYRLR-DLSEVKDGERITVQGNLIGAPVLQRYGRKSRLSCKVVIDHFF-- 90

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           +T ++F R    LK+    G++I +TGK    + ++ +    +  ++S       ++ VY
Sbjct: 91  VTAVWFNRP--FLKDKLASGKEIRLTGKWDARRKQLTVSESEFPGNDSLTGT---LQPVY 145

Query: 161 SLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           SL   L+    +K+I +AL +   ++ E +  D +++       +A  +IH P   +D  
Sbjct: 146 SLTGSLTQKSIRKMIQQALKQFGNLIQEVLPADFVKRYQLLPRKQAVALIHQPSGLED-- 203

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQE 278
               AR R+ Y+EL   Q+ +   +   +K   G+   V+    +  ++++PF  T SQ+
Sbjct: 204 -GKQARRRMVYEELFFFQLKMHAFKAITRKRADGLAQQVDLPKIRSFVKSLPFELTPSQK 262

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + +IL DM Q   M R+L+GDVG+GKT+VA  A+ A V AG Q  +M P  ILA+QH 
Sbjct: 263 QVVGEILHDMQQPYTMNRLLKGDVGAGKTVVAATALYATVTAGCQGALMVPTEILAEQHK 322

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + + +  +   I   ++TG+     RR+ L  +  G   ++IGTHAL Q+ + + KL LV
Sbjct: 323 KSLSRMFKPYGIETALLTGSSTDKKRREILAGVQMGLIQVLIGTHALIQEDVFFRKLGLV 382

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           + DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ GD+D+S + E P GRKPI
Sbjct: 383 VTDEQHRFGVSQRSILRRKGMNPDVLSMTATPIPRTLAITAFGDLDVSTLREMPKGRKPI 442

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
           KT  +  + ++ V+  ++   + G++AY ICP IEE  + + ++ ++    L +HF   +
Sbjct: 443 KTYWVHHDMLERVLGFIQKEAAGGRQAYVICPLIEESDKLDVQNAIDVHVQLQQHFPDLN 502

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I ++HGRM+  +K+  M SFK+G+ ++L++TTVIEVG+DV +A+++++ +A+ FGL+QLH
Sbjct: 503 IGLLHGRMTAAEKDDTMRSFKDGSIQVLVSTTVIEVGVDVPNATLMVVYDADRFGLSQLH 562

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRGE  S C+L+  P  ++    R+  +  T DGF IA  DL+ R  G+  G K
Sbjct: 563 QLRGRVGRGEHQSFCVLIADPK-TEVGKERMQAMTETTDGFEIARRDLELRGPGDFFGTK 621

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           QSG+P+F IA       ++EIAR DA  ++ +
Sbjct: 622 QSGLPEFRIADLMCDFEIMEIARDDAADLVAK 653


>gi|94971548|ref|YP_593596.1| ATP-dependent DNA helicase RecG [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553598|gb|ABF43522.1| ATP-dependent DNA helicase RecG [Candidatus Koribacter versatilis
           Ellin345]
          Length = 753

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 239/698 (34%), Positives = 393/698 (56%), Gaps = 51/698 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL+Y P  + DR     I E+    + ++   +     F+ +    +++ +  G   + 
Sbjct: 67  DLLYYLPFRYEDRLNPRGIGELRPGEMASVVAEVRTSGLFRTRAGPMFQLTVGQGHQTLK 126

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLK---NRIIMVHPHY-IFHN----SQDVN-- 152
            L+F+     LK+ F  G+ + + GK+++ K     + ++ P + + H+    ++D +  
Sbjct: 127 CLWFH--GAYLKDRFKPGQLLAMYGKVEESKFGRRELQIIQPQFEVLHDPDEPAEDADSG 184

Query: 153 ----------FPLIEAVYSLPTGLSVDLFKKIIVEALSRL------PVLP-EWIEKDLLQ 195
                      P+ E   +    L+   F+++I  AL  L      P+ P      DLL+
Sbjct: 185 KLKTLEIGRIVPIYETAGN--GKLTSKYFRRVIYGALENLTDEIPDPIPPVTRSHVDLLE 242

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLLMRKQFKKEI 251
           +++      AF+  H P + + F     AR     RL ++EL   ++ L L R++ + + 
Sbjct: 243 RRA------AFSKAHWPDEGESFTRLQSARSAAHIRLIFEELFFLELGLELKRRKMRAQA 296

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           GIP  V+ ++ + I R +PF PT +Q+  + +I+ DM Q + M R+LQGDVGSGKT+VA 
Sbjct: 297 GIPFRVDDQVREAIKRILPFHPTAAQKRVLGEIVADMKQPSPMRRLLQGDVGSGKTIVAF 356

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   A+E G Q  +MAP  ILA QHY   ++  +     + ++TG++ Q  +R+    I
Sbjct: 357 EAAVIAIENGYQVALMAPTEILATQHYLSARRILEGAGYRIVLLTGSVEQDRKREIRRHI 416

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTAT 429
           A G A ++IGTHAL Q+ +++  L LVIVDEQHRFGV QR KL +K  A  P VL+MTAT
Sbjct: 417 AQGNAQLVIGTHALIQEGVEFDALGLVIVDEQHRFGVMQRFKLMKKTDAAEPDVLVMTAT 476

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL LT  GD+D+S + E P GR PI T  +   R DEV   ++  ++ G +AY + 
Sbjct: 477 PIPRTLALTLYGDLDVSILNELPPGRTPIVTRRVSDERADEVWAFVRKQIAAGHQAYIVY 536

Query: 490 PQIEEKKES----NFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           P IEE +++      ++ ++ ++ L ++  +   + ++HGRM   DK++VM  F+ G  +
Sbjct: 537 PVIEENEDAESGKQLKAAMKMYDELRKNVFADLRVGLLHGRMDSDDKDAVMRRFQAGDVQ 596

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG+DV +A+I+++E+AE FGL+Q+HQLRGR+GRG   S C+L+    +S  
Sbjct: 597 VLVSTTVIEVGVDVPNANIMVVEHAERFGLSQMHQLRGRIGRGSAKSFCVLMTGGKVSPE 656

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL  + +T DGF I+E DL+ R  GE  G KQ+GMP F +A       LLE+A+++A
Sbjct: 657 AEQRLDAMVSTNDGFQISELDLQLRGPGEFFGTKQAGMPDFRVANLLRDRELLELAKREA 716

Query: 664 KHILTQ-DPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            ++ +   PDL+    +++   L  + +N  +  +  G
Sbjct: 717 AYVTSGPHPDLSEAEIKNVLTHLRTH-WNRRYGLVEVG 753


>gi|256820801|ref|YP_003142080.1| ATP-dependent DNA helicase RecG [Capnocytophaga ochracea DSM 7271]
 gi|256582384|gb|ACU93519.1| ATP-dependent DNA helicase RecG [Capnocytophaga ochracea DSM 7271]
          Length = 704

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 254/715 (35%), Positives = 389/715 (54%), Gaps = 40/715 (5%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P++  RGVG + +  L   ++        + DLL   P+ +IDR    KI+E+  
Sbjct: 5   NILHTPINYLRGVGNQRAELLKTELSI-----YEYQDLLNLFPNRYIDRTKFYKINELQN 59

Query: 67  ERI-VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKI 123
               V + G I    + +   ++  +++    D TG + L++F +  + L+         
Sbjct: 60  NNAEVQLVGKIVNLRTVESAHQKGTRLVATFVDDTGTMELVWF-KGLKWLRESLKINEPY 118

Query: 124 TVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
            + GK+        M HP   +    +      I+ VY  P+  +  L K+ I   + R 
Sbjct: 119 VIFGKLNFFGGTFSMPHPEMDLLSEFKKAGHSSIQPVY--PS--TEKLAKRNITNRVMRQ 174

Query: 183 PV----------LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            V            E +  ++L   +  S  EA   IH P         + A  RL ++E
Sbjct: 175 LVQTVFEEVGNSFAENLPDNILVSMNLISKQEAMRNIHFPTNQT---LLTKASVRLKFEE 231

Query: 233 LLAGQIAL----LLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           L   Q+ L    LL +++F+   G P  NV          ++PF  T +Q+  +K+I  D
Sbjct: 232 LFYIQVQLVRKNLLHKQKFQ---GQPFKNVGDAFMNFYNHHLPFPLTDAQKRVLKEIRAD 288

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           +    +M R+LQGDVGSGKT+VAL+ M  AV+ G QA +MAP  ILA QHY+ I +  + 
Sbjct: 289 VGSNVQMNRLLQGDVGSGKTIVALMTMLLAVDNGCQACLMAPTEILANQHYQNISELLKE 348

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
           T + V ++TG+     R+   E++  G+  I+IGTHAL ++ +Q+  L L I+DEQHRFG
Sbjct: 349 TGVTVALLTGSSKTKERKMLDEQLQSGELSILIGTHALLENKVQFRNLGLAIIDEQHRFG 408

Query: 408 VQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           V+QR KL  K T  PH+L+MTATPIPRTL ++  GD+DIS I E P GRKPIKT+    N
Sbjct: 409 VEQRSKLWHKNTIPPHILVMTATPIPRTLAMSVYGDLDISIIDELPPGRKPIKTLHQFEN 468

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHG 523
              E  E +K  + +G++AY + P IEE +  +F+++ E ++ +   F      ++++HG
Sbjct: 469 HRAETYEFIKKEIDKGRQAYVVYPLIEESEALDFKNLTEGYDYITASFPLPKYKVSMVHG 528

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           R+   +K++ MD F     ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRV
Sbjct: 529 RLKPAEKDAEMDRFLRNETQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRV 588

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG E S CILL    +S ++ TR+  +  T DGF IAE DLK R  G+++G +QSG+  
Sbjct: 589 GRGSEQSYCILLTGNKMSNDTCTRMETMVRTNDGFEIAEVDLKLRGPGDLMGTQQSGVLA 648

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY-LYQYNEAFQFI 697
             IA       +L+ AR  A  +L  DP+L   + Q I   LY L +Y   + +I
Sbjct: 649 LKIADLVKDQDILKAARFQAIDLLKADPNLELPQNQRIAHTLYQLQRYKNLWTYI 703


>gi|317504798|ref|ZP_07962756.1| DNA helicase RecG [Prevotella salivae DSM 15606]
 gi|315664073|gb|EFV03782.1| DNA helicase RecG [Prevotella salivae DSM 15606]
          Length = 700

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 247/680 (36%), Positives = 385/680 (56%), Gaps = 31/680 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE-RIVTITGYI 76
           GVG K    LSK +N        + DLL Y+P  ++DR     I E++     V I G I
Sbjct: 14  GVGPKRKEILSKELNIQT-----WRDLLEYYPYKYVDRSKIYTIDELNGSIPFVQIKGKI 68

Query: 77  SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
                F    RR   +   +DG G + L++F R T+ +   +    +  V GK     +R
Sbjct: 69  LSFEEFSNGTRRKRIVAHFSDGHGVVDLVWF-RGTQYIYKTYALNTEYIVFGKPTVFGSR 127

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRLP------V 184
               HP     +   +N   ++  YS        G++    +K+    +SRLP       
Sbjct: 128 YQFAHPEIEKADELQLNEMGMQPYYSTTERMKTNGITSRTIEKLTKNLISRLPKDAISET 187

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP +I++ L       S   AF  IH P+   + +    A+ RL ++EL   Q+ +L   
Sbjct: 188 LPVFIQRPL----HLISREAAFKGIHYPKSLDELQ---HAQVRLKFEELFYVQLNILRYA 240

Query: 245 KQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
              +++  G      G+I     +N +PF  T +Q+  + ++  DM+   +M R+LQGDV
Sbjct: 241 SDHRRKYRGYVFQRVGQIFNTFYQNNLPFDLTNAQKRVMHELRDDMASGKQMNRLLQGDV 300

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVAL+ M  A++ G QA IMAP  ILA+QH   IK++ Q   + VE++TG +   
Sbjct: 301 GSGKTLVALMTMLIAIDNGFQACIMAPTEILAEQHLTTIKEFLQGMDVRVELLTGIVKGK 360

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAP 421
            R++ LE +A+G  +I++GTHA+ +D++Q+ +L L +VDEQHRFGV QR +L  K+   P
Sbjct: 361 KRQEVLEALANGDINILVGTHAVIEDTVQFARLGLAVVDEQHRFGVAQRARLWAKSENPP 420

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N++  +   ++  + +
Sbjct: 421 HILVMTATPIPRTLAMTIYGDLDVSIIDELPPGRKPIQTIHKFDNQMTSLYNGIRQQIQQ 480

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++ Y + P I+E ++++ + + + + SL E F   SI+ +HG+M   +KE  M  F +G
Sbjct: 481 GRQVYIVFPLIKENEKNDLKDLEKGYESLLEIFPDFSISKVHGKMKPSEKEEEMRRFVSG 540

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+    +
Sbjct: 541 ETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGAKQSYCILVTSYKM 600

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIA 659
           S+ +  R+ ++  T DGF IAE DLK R  G++ G +QSG+   L IA       L+++A
Sbjct: 601 SEETQKRIDIMCETNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLVQLA 660

Query: 660 RKDAKHILTQDPDLTSVRGQ 679
           R +A+ I+  DP    V  Q
Sbjct: 661 RDEAQKIIEHDPTCQKVEYQ 680


>gi|296135161|ref|YP_003642403.1| ATP-dependent DNA helicase RecG [Thiomonas intermedia K12]
 gi|295795283|gb|ADG30073.1| ATP-dependent DNA helicase RecG [Thiomonas intermedia K12]
          Length = 719

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 247/689 (35%), Positives = 373/689 (54%), Gaps = 46/689 (6%)

Query: 41  FIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL------ 94
           + DL  + P  + D      +  + +  IVT    + +    Q+Q R P + LL      
Sbjct: 47  YWDLALHLPLRYEDETRLTPLGALRDGEIVTTDAVVIE---TQVQGRAPRRQLLVRLQDP 103

Query: 95  NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP 154
             G   +TL  F+     LK     G ++ V G++++      MVHP +      D N P
Sbjct: 104 EAGDAILTLRLFHFYPNQLKT-LQPGVRLRVHGQVRQGLFGWEMVHPTWKL---VDANAP 159

Query: 155 L---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
           L   +  VY    G+     +K +  AL RL V  + + ++ L +   P +  +   +H 
Sbjct: 160 LPNTLTPVYPTTAGVPQSYLRKAVAGALERL-VWRDTVPQEELTRHHLPDLPSSLRTLHA 218

Query: 212 PRKAKDFEWTS---PARERLAYDELLAGQIALLLMRKQFK--KEIGIPINVEGKIAQKIL 266
           P  A      +   PA+ RL +DELLA Q+A    R Q +  K   +P   E       L
Sbjct: 219 PPAAALPALEAGAHPAQRRLKFDELLAQQLAQQQARAQRQRWKAPMLPAAPEAHSLPAQL 278

Query: 267 RN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           R  IPF+ T +QE  + +I  D++Q   M R+LQGDVGSGKT+VA +A A AV +G Q  
Sbjct: 279 RAAIPFTLTAAQERCVAEIAADLAQTAPMHRLLQGDVGSGKTVVAALAAAQAVASGWQCA 338

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA QH   +  + +   + V  ++G+  +  R  AL+R+A G+A +++GTHA+
Sbjct: 339 LMAPTEILAAQHARKLADWLEPLGVGVAWLSGSQTKKEREAALQRVASGEAQLVLGTHAV 398

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--------PHVLLMTATPIPRTLVL 437
            Q  +++ +L L IVDEQHRFGV QRL L     A        PH+L+M+ATPIPRTL +
Sbjct: 399 IQAQVRFARLGLAIVDEQHRFGVAQRLALRDSLRAGTQGSGLQPHLLMMSATPIPRTLAM 458

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
              GD+D+S I   P GR P++T ++  +R DE+I R+  + ++G++AYW+CP +EE + 
Sbjct: 459 ALFGDLDVSTIDVLPPGRTPVRTSVVSTDRRDELIARVGALTAQGRQAYWVCPLVEESET 518

Query: 498 SNFRSVVERFNSLHEHFTS-------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            + ++ V     L     +        + ++HGRM   +K + M +F  G   LL+ATTV
Sbjct: 519 LDLQNAVATHAELSAALATRPGQGAVQVGLLHGRMKAQEKRATMQAFSAGEIGLLVATTV 578

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           IEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S C+LL+  PLS  +  RL  
Sbjct: 579 IEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAQSDCVLLFTSPLSPTARERLGA 638

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           ++   DGF +A++DL+ R  GE+LG++QSG+P    A       LLE AR  A+ +L   
Sbjct: 639 MRELTDGFALAQKDLELRGPGELLGLRQSGVPGLRYADLAQDIDLLEAARDTAQRLLVAA 698

Query: 671 PDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           P+  + R  + R L       E F ++ A
Sbjct: 699 PE--AARQHAARWL------GEGFDWLSA 719


>gi|220931855|ref|YP_002508763.1| ATP-dependent DNA helicase RecG [Halothermothrix orenii H 168]
 gi|219993165|gb|ACL69768.1| ATP-dependent DNA helicase RecG [Halothermothrix orenii H 168]
          Length = 683

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 245/673 (36%), Positives = 379/673 (56%), Gaps = 38/673 (5%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           RGVG +Y+  L K+    N N  +  DLL+Y P ++ DR     I  I     VT+ G I
Sbjct: 13  RGVGPRYAEVLKKL----NINTVK--DLLYYFPRTYQDRSQFTPIKYIRPGYEVTVQGEI 66

Query: 77  SQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
            +    +++K     K  + DG+  +  ++F      +K    +G+    +GK+ +   R
Sbjct: 67  IKIEENKIRKGLSILKATITDGSDVLNGVWF--NQNYIKKQLKKGQTYIFSGKLNEKSFR 124

Query: 136 II---MVHPHYIFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-----VLP 186
                + +P +   +  D ++   I  +Y L +G++    + II  AL+         LP
Sbjct: 125 FRKKEISNPVFEKVDKGDSIHTGRIVPIYPLTSGVTQKRLRTIIYNALNDYAHHLTDYLP 184

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
            +I K    K  FP I+ +   +H P   + + +   +R RLA++EL   Q+ +L  +K 
Sbjct: 185 GFIRK----KYKFPDISRSIWGLHFPENREHYIY---SRRRLAFEELFFLQLLVLKRKKG 237

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
             +  GI    EG++ +K L+ +PF  T +Q+   ++I  DM +   M R+LQGDVGSGK
Sbjct: 238 IIESRGINHKDEGEVIKKFLKLLPFRLTAAQKRVWREIKADMEKPTPMQRLLQGDVGSGK 297

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQA 362
           T++A +A+   +  G Q V MAP  ILA+QHY    + ++     T ++V  ITG+    
Sbjct: 298 TIIAALALIETMANGYQGVFMAPTEILAEQHYLKLKDLLEPLGYRTALLVGGITGS---- 353

Query: 363 HRRKALER-IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
            +R+ +ER I   +  +I+GTH LFQ+ I Y+ L LV++DEQHRFGV+QR KL +K   P
Sbjct: 354 -QRENIERGIEEKKIDLIVGTHTLFQERINYFSLGLVVIDEQHRFGVEQRFKLEKKGDNP 412

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRT+ LT  GD+D+S I E P GR P+ T     N    +   +K  L E
Sbjct: 413 DVLVMTATPIPRTMALTIYGDLDLSIIDELPPGRSPVITTWRTQNSRKRIYSFVKEKLEE 472

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKN 539
           G++AY +CP IE  +E    S +E    L + +    ++ ++HG++   +K+ VM+ F+ 
Sbjct: 473 GRQAYVVCPVIEPSEELEVVSALEIKEKLEDKYLKGYNVGLLHGKLPPEEKKQVMEDFRQ 532

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L++TTV+EVG+DV +A+I+IIENA+ FGLAQLHQLRGRVGRG+  S CIL+ + P
Sbjct: 533 GVIDVLVSTTVVEVGVDVPNATIMIIENADRFGLAQLHQLRGRVGRGKYQSYCILIGN-P 591

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++    RL V+ +  DGF IA+EDLK R  GE  G +Q G+P   +A       LL++A
Sbjct: 592 TTEEGKRRLKVMTSLNDGFEIADEDLKIRGPGEFFGTRQHGIPDLKVASLIKDKKLLQLA 651

Query: 660 RKDAKHILTQDPD 672
           R++A +I+    D
Sbjct: 652 RQEAFNIIYSTRD 664


>gi|260655186|ref|ZP_05860674.1| ATP-dependent DNA helicase RecG [Jonquetella anthropi E3_33 E1]
 gi|260630108|gb|EEX48302.1| ATP-dependent DNA helicase RecG [Jonquetella anthropi E3_33 E1]
          Length = 691

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 233/673 (34%), Positives = 360/673 (53%), Gaps = 32/673 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PL+  +GVG   +  L ++            DLL++ P  + DR     ++    + 
Sbjct: 10  LRSPLTDLKGVGSARADALGRL------GLFSIEDLLYFFPRRYEDRRTLVPLASAVHDA 63

Query: 69  IVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
                  +   S  +  K+     +  L+DG      L+F R    L+     G ++ + 
Sbjct: 64  QGAFRAVVLSWSRLRSPKKGVSMLRASLSDGQSVAGALWFGRPG--LERALQAGTELALW 121

Query: 127 GKIKKLKNRIIMVHPHY-IFHNSQDVN-----FPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           GK+ +  NR+ +++P   +    Q+        P+      LP     +L  + +   +S
Sbjct: 122 GKVNRRGNRVELINPELEVLRGGQEPTIIGTILPIYPGTAQLPDRWLRELVSRAVDFGVS 181

Query: 181 RLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +L   LPE     L+ ++ +P    A   +H P       W + AR RLA++E L  QI 
Sbjct: 182 QLTETLPE----SLISERGWPDAKTAVFQMHRPTSRSG--WLA-ARTRLAFEEFLWLQIG 234

Query: 240 LLLMRKQFKKEIGIPINVEG---KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           L L R    KE   P  ++G    + Q  L  + FS T  Q  A  +I +D+     M +
Sbjct: 235 LALRRAGSDKEARAP-RLDGLARPLRQAFLDRLGFSLTDDQRRATAEIDEDLMNPAGMNK 293

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT VAL+AM  AVE+G QAV+MAP  +LA QH+  ++++     +   ++ 
Sbjct: 294 LLQGDVGSGKTAVALLAMLRAVESGKQAVLMAPTQVLAFQHWMTVRRWLDPLGVKTALLA 353

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G + Q+ + + L  +A G   + IGTHAL Q+ + +  L +V++DEQHRFGV QR  L+ 
Sbjct: 354 GGLKQSEKEEILTGLADGTIDLAIGTHALVQEGVDFADLGVVVIDEQHRFGVLQRRTLSA 413

Query: 417 KATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           ++   PH L+MTATPIPRTL L+  GD+ +S +  KPAGR PI+T  +  ++  +++  L
Sbjct: 414 RSGGQPHRLVMTATPIPRTLALSIYGDLSLSTLRHKPAGRLPIRTSWVSESKRPDLLNWL 473

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVM 534
           +  +  G++ YWICP IEE +E    ++  RF  L   F +    ++HGRM+  +K +VM
Sbjct: 474 EEQMDGGRQVYWICPIIEESEELPVAALEARFAELKARFGAERTGMLHGRMTSDEKTAVM 533

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F  G   LL ATTVIEVG+DV +A++++IE+AE FGL+QLHQLRGRVGRG+  S C L
Sbjct: 534 EDFSAGRLTLLAATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDRQSWCFL 593

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           L H      S  RL     T+DGF IA+ D+  R  GE  G++Q G+  F +A       
Sbjct: 594 LSHA--GGPSAERLRAFCRTDDGFAIADLDMSLRGPGEFCGVRQHGITDFRVADLVRDVQ 651

Query: 655 LLEIARKDAKHIL 667
           L+E A+K A+ ++
Sbjct: 652 LMEDAQKTARKMV 664


>gi|298208660|ref|YP_003716839.1| ATP-dependent DNA helicase recG [Croceibacter atlanticus HTCC2559]
 gi|83848583|gb|EAP86452.1| ATP-dependent DNA helicase recG [Croceibacter atlanticus HTCC2559]
          Length = 700

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 252/691 (36%), Positives = 384/691 (55%), Gaps = 43/691 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG   +  L   ++        F DLL + P  +ID+    KI+E+    
Sbjct: 5   LQTPIDYLKGVGTNRADLLRTELDIHT-----FQDLLNFFPFRYIDKTKYYKINELQRNS 59

Query: 69  I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V + G I+   + + ++ +       D TG++ L++F R  + +K          + G
Sbjct: 60  ADVQVIGKITHIKTVEQKRGKRLVADFIDDTGKMELVWF-RGHKWIKENLKLNTAYVIYG 118

Query: 128 KIKKLKNRIIMVHPH---YIFHNSQDVNFPLIEAVYS-----LPTGLSVDLFKKIIVEAL 179
           K+        M HP    Y  H  ++V   + + VYS        G++     K++ +  
Sbjct: 119 KVNHYNGTFSMPHPEMEPYATH-KEEVKIAM-QPVYSSTEKLTNKGITQRFMGKMMQQVF 176

Query: 180 SRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
            +      E +   L ++    S  +A   IH P   K+ E  + A+ RL ++EL   Q+
Sbjct: 177 IQTGATYEETLAAPLREELKLISKTQALRNIHFP---KNSELLAKAQFRLKFEELFYIQL 233

Query: 239 ALL---LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRM 294
            +L   L RKQ  K  G P +  G++      N +PF  T +Q+  IK+I  D+    +M
Sbjct: 234 QMLSKNLQRKQRLK--GFPFDQVGEVFNDFYENHLPFELTNAQKRVIKEIRNDLGSSAQM 291

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVGSGKT+VAL+ +  A++   QAV+MAP  ILAQQHY+ IK    +  I V +
Sbjct: 292 NRLLQGDVGSGKTIVALMCVLLAIDNNFQAVLMAPTEILAQQHYQGIKDLVAHLDIKVNL 351

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG++ ++ R    E +  G  +++IGTHA+ +D +Q+  L L I+DEQHRFGV QR KL
Sbjct: 352 LTGSVKKSARTLIHEALEDGTLNLLIGTHAVLEDKVQFKNLGLAIIDEQHRFGVAQRSKL 411

Query: 415 TQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
            +K T  PH+L+MTATPIPRTL ++  GD+DIS I E P GRK IKTV    +R D    
Sbjct: 412 WRKNTIPPHILVMTATPIPRTLAMSVYGDLDISVIDELPPGRKAIKTV----HRFDS--H 465

Query: 474 RLKVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGR 524
           RL+V       + +G++ Y + P I+E +  +++ +++ + S+   F      ++I+HG+
Sbjct: 466 RLRVFRFIRDEIEKGRQVYVVYPLIQESEVLDYKDLMDGYESIVRDFPLPEYQVSIVHGQ 525

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   DK+  M  F  G   +++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVG
Sbjct: 526 MKPADKDYEMQRFVEGKTHIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVG 585

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RG E S CIL+    LS +S TRL  +  T DGF IAE DLK R  G+++G +QSG+   
Sbjct: 586 RGAEQSFCILMTGHKLSDDSKTRLETMTRTNDGFEIAEVDLKLRGPGDMMGTQQSGVLNL 645

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            IA     +++L++AR  A  IL +DP L+ 
Sbjct: 646 KIADIVKDNNILKLARSYAYAILKEDPSLSD 676


>gi|281421376|ref|ZP_06252375.1| ATP-dependent DNA helicase RecG [Prevotella copri DSM 18205]
 gi|281404448|gb|EFB35128.1| ATP-dependent DNA helicase RecG [Prevotella copri DSM 18205]
          Length = 698

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 237/670 (35%), Positives = 376/670 (56%), Gaps = 21/670 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG K    LSK +   +     + DLL Y+P  ++DR     ISE++ +   V + G I
Sbjct: 14  GVGPKKKEILSKELGINS-----YSDLLEYYPYKYVDRSKVFHISELNADMPFVQLKGKI 68

Query: 77  SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
             +      KR    +   +DG G +  L +YR  + +   +  G +  V GK      R
Sbjct: 69  LSYDEIDTGKRNKLLVAHFSDGYG-VADLIWYRGAQYIMKTYKVGTEYLVFGKPTVFNGR 127

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-----LPVLPEWIE 190
               HP      +  ++   ++  YSL   L    +    +E +++     LP LPE + 
Sbjct: 128 FQFTHPDMDDATNLQISEMGMQPYYSLTENLRKRGYTSRSIEKMTKQLVTILPPLPETLP 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKK 249
             ++ +    S   A  +IH P   ++ +    A+ RL ++EL   Q+ ++     Q +K
Sbjct: 188 NHIVDRLHLVSRDAAIRMIHYPHSHQEMQ---KAQVRLKFEELFYVQLNIIRYATDQRRK 244

Query: 250 EIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
             G   N    I       ++PF  T +Q+  + +I  DM    +M R+LQGDVGSGKTL
Sbjct: 245 FRGYVFNRIADIFNGFYAHHLPFELTGAQKRVMHEIRADMCSGRQMNRLLQGDVGSGKTL 304

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL+ M  A++ G QA +MAP  ILA+QH + I  + Q   I VE++TG +    R K L
Sbjct: 305 VALMTMLIALDNGYQACMMAPTEILAEQHLQTICDFLQGMDIRVELLTGIVKGKKREKIL 364

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMT 427
             +A G   I++GTHA+ +D + + +L + ++DEQHRFGV QR KL  K+   PH+L+MT
Sbjct: 365 ADLATGDIQILVGTHAILEDPVVFRRLGVAVIDEQHRFGVAQRAKLWNKSENPPHILVMT 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S I E P GRKPI+T+     ++  + + ++  ++ G++ Y 
Sbjct: 425 ATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTLHKFDTQLTSLYQSIRRQINLGRQVYI 484

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P I+E ++S+ +++ E + +L + F    ++ IHG+M   +KE  M+ F  G  ++L+
Sbjct: 485 VFPLIKESEKSDLKNLEEGYETLKQAFPEFKLSKIHGKMKSTEKEVEMEQFVKGETQILV 544

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ +  LS+ +  
Sbjct: 545 ATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGCDQSYCILVTNYKLSEETRK 604

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665
           R+ ++ +T DGF IAE DLK R  G++ G +QSGM   L IA       L+++AR +A+ 
Sbjct: 605 RIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGMAFDLKIANIARDGQLVQLARTEAQE 664

Query: 666 ILTQDPDLTS 675
           I+  DP+  +
Sbjct: 665 IIDNDPECNA 674


>gi|293570719|ref|ZP_06681769.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E980]
 gi|291609191|gb|EFF38463.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E980]
          Length = 678

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 234/666 (35%), Positives = 381/666 (57%), Gaps = 29/666 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEI 64
           +  L  P++   GVG+K +  L+ +         R I DLL Y+P  + D   R  ++EI
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL-------GIRTIEDLLTYYPFRYEDIQER-NLNEI 52

Query: 65  SEERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
            ++  VT+ G +      + F  +K R  ++++       ++  FF +    LK      
Sbjct: 53  QDQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILS 108

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            +I V GK      R  +     +   + D   P+     S+     VDL KK   E  +
Sbjct: 109 EEIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT 166

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
              ++ E +  +L++K      A A   +H P   K+ E    A+ R+ ++E    Q+ L
Sbjct: 167 ---LIEENLPNNLVEKYRLLDRASAVRSMHFP---KNHEENHQAKRRVVFEEFFLFQMRL 220

Query: 241 LLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             ++K  K E  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQ
Sbjct: 221 QGLKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQ 280

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ V ++TG+ 
Sbjct: 281 GDVGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTVALLTGST 340

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+ LE++  G+ +++IGTHAL QD +++  L LVI DEQHRFGV QR  L +K  
Sbjct: 341 KTKERRELLEKLERGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGW 400

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  +  L
Sbjct: 401 RPDVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKEL 460

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSF 537
           + G + Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++F
Sbjct: 461 ARGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAF 520

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+   ++L++TTVIEVG+++ +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +
Sbjct: 521 KDNQMQILVSTTVIEVGVNMPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVAN 580

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           P  ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F IA      ++LE
Sbjct: 581 PK-NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLE 639

Query: 658 IARKDA 663
           +AR++A
Sbjct: 640 VAREEA 645


>gi|291545912|emb|CBL19020.1| ATP-dependent DNA helicase RecG [Ruminococcus sp. SR1/5]
          Length = 686

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 231/672 (34%), Positives = 374/672 (55%), Gaps = 24/672 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERI 69
            PL   +GVG+K      KI        T   +LL Y+P ++ D +  P +I+   E++ 
Sbjct: 5   TPLRELKGVGEKTEKLFQKI------GITTAEELLRYYPRTY-DIYEEPVEIASAEEDKT 57

Query: 70  VTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           V+I   I+  +   + + R  ++L   + D +G + + +F      L+    +G    + 
Sbjct: 58  VSIRATIA--TGIYINQIRNLQVLTTTVADASGRLPVAWF--NAPYLRGTLKKGSVFILR 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GKI + K R  M HP      + +     ++ VY L  GLS  +  K++ + L   P+  
Sbjct: 114 GKIIRKKGRPQMEHPEIFTPAAYEEIIHSMQPVYGLTKGLSNKMITKLVHQILDTRPLHG 173

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E++ +++ ++        A   IH P+  ++      AR+RL +DE L   +A+ L++++
Sbjct: 174 EYLPEEIRERYQLADANYAIRTIHFPKNMQEL---LTARKRLVFDEFLLFVLAIQLLKEK 230

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            ++             ++I+  +P+  T +Q++   +I +D+S    M R++QGDVGSGK
Sbjct: 231 TEEAPNTFPMKPVWTTEEIIEGLPYDLTGAQKNVWHEIERDLSGHKLMSRLVQGDVGSGK 290

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV---EIITGNMPQAH 363
           T++A +AM  + E G Q+ +M P  +LA QHYE   +  +   I      ++TG+     
Sbjct: 291 TVIAFLAMVLSAENGFQSALMVPTEVLANQHYEGFLRLMEEQNIASCHPVLLTGSTTARQ 350

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R+  ++IA G+ ++IIGTHAL Q+ ++Y  L LVI DEQHRFGV+QR  LT +   PHV
Sbjct: 351 KREIYQKIADGEVNVIIGTHALIQEKVEYKNLGLVITDEQHRFGVRQREALTTRGNPPHV 410

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++  +   +    ++  +  G+
Sbjct: 411 LVMSATPIPRTLAIILYGDLDISIIDELPAKRLPIKNCVVGTSYRPKAYSFIEKQVQMGR 470

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP +EE +     +V +    L E     I   I+HG+M   +K  +M++F +G 
Sbjct: 471 QAYVICPMVEESEGLEAENVTDYARKLQEILPGEIKVEILHGKMKPKEKNRIMEAFASGE 530

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE  S CI +      
Sbjct: 531 IQVLVSTTVVEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEHQSYCIFI-QGNNE 589

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +N+  RL +L  + DGF IA EDLK R  G++ GI+QSG+ +F I        +L+ A +
Sbjct: 590 ENTSKRLKILNESNDGFYIAGEDLKLRGPGDLFGIRQSGLMEFKIGDIYNDAGILKNASE 649

Query: 662 DAKHILTQDPDL 673
            A  IL  D DL
Sbjct: 650 AAGEILALDFDL 661


>gi|238927334|ref|ZP_04659094.1| DNA helicase RecG [Selenomonas flueggei ATCC 43531]
 gi|238884616|gb|EEQ48254.1| DNA helicase RecG [Selenomonas flueggei ATCC 43531]
          Length = 706

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 240/673 (35%), Positives = 370/673 (54%), Gaps = 46/673 (6%)

Query: 1   MRPSFLN------PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID 54
           MR  FL        L   ++  RGVG + +  L+++            DLL ++P ++ D
Sbjct: 7   MRQPFLKGWRQCVKLTDSVNAVRGVGVRKAALLARL------GVRTVYDLLTFYPRAYED 60

Query: 55  RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTE 111
           +    +I +++     T+ G I Q +  Q  +RR + +L   + DGTG    ++F ++  
Sbjct: 61  QSRITRIMDLAAGTRATVLGMIQQVTERQ-TRRRGFTVLTALVGDGTGYAQAVWFNQR-- 117

Query: 112 MLKNVFFEGRKITVTGKIKKL-----KNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTG 165
            LK     G++I +TGK+        +     V    +    +D    L I  +Y+   G
Sbjct: 118 FLKGKLRTGQRILLTGKVDYAYGGGGQMAFSPVTSFVLLGAQEDAAAHLGILPIYAATEG 177

Query: 166 LSVDLFKKIIVEALSR-----LPVLPEWI--EKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           L+    +++  + L+         LPE I  E  L+ + +      AF+ IH P   KD 
Sbjct: 178 LTQKQLRQMTADVLAHAGEELTETLPEQIRAEYHLIGRSA------AFSQIHFP---KDT 228

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           E  + AR RLA++EL   Q  LL ++KQ  + E GI     G +  ++   +PF+ T+ Q
Sbjct: 229 EELAAARRRLAFEELYLIQCGLLALKKQTAEDEEGIAHRANGALVARVRDALPFALTEDQ 288

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           E    +I +DM     M R++QGDVGSGKT +AL+A+   VE+G Q  +MAP  ILA+QH
Sbjct: 289 EKVWAEISRDMEAPLPMRRLVQGDVGSGKTAIALLALVKTVESGCQGALMAPTEILARQH 348

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+ ++++     I V  ++G + +    + L  +A  ++ ++IGTHAL Q+ + + +L L
Sbjct: 349 YDGLREFLTPLGIRVGFLSGRLTKKEHAEVLSALASHESDVVIGTHALIQEGVAFDRLGL 408

Query: 398 VIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           V+ DEQHRFGV QR  L +K+   P VL+MTATPIPRT+ LT  GD+D+S+I   P GR+
Sbjct: 409 VVTDEQHRFGVAQRSALEKKSGIVPDVLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRQ 468

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PI+T +       ++   ++  +  G++AY +CP IE  +ES+  S  E +N L      
Sbjct: 469 PIRTFLRDETARAKIYAFVRREIERGRQAYVVCPLIEANEESDLPSAEEVYNELSCGSFR 528

Query: 517 SI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            I   ++HGR+   DKE+VM  F  G  KLL+ATTVIEVG++V +A+++++E+AE FGLA
Sbjct: 529 GIRCGLVHGRLKASDKEAVMRGFYAGEIKLLVATTVIEVGVNVPNATVLVVEHAERFGLA 588

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG + S CIL+           RL V++ T DGF +AEEDL+ R  G+  
Sbjct: 589 QLHQLRGRVGRGSDASYCILI--AGRQAAGAERLRVIEETSDGFRLAEEDLRLRGPGQFF 646

Query: 635 GIKQSGMPKFLIA 647
           G  Q G+    IA
Sbjct: 647 GAMQHGLGDLKIA 659


>gi|220917310|ref|YP_002492614.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955164|gb|ACL65548.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 904

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 227/636 (35%), Positives = 346/636 (54%), Gaps = 11/636 (1%)

Query: 49  PSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFY 107
           P ++ DR    +ISE+       + G +S     +++  +P  K+ + +G   + L+FF 
Sbjct: 245 PRAYQDRTALRRISELRVGDEAAVLGTVSHVRVQRMRSGKPLLKVGVQEGGSALELVFFN 304

Query: 108 RKTEMLKNVFFEGRKITVTGKIKK-LKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTG 165
                LK  F  G  +  +GK+ +    R  M  P      + D  NF  I  VY  P  
Sbjct: 305 PPPWRLKQ-FAAGESLLCSGKVTEGFGARRQMSQPEVEKVQAGDSANFGRIVPVYPGPAD 363

Query: 166 LSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEW 220
                 +K++   +  L P   + +  ++  ++     AEA    H P    D     E 
Sbjct: 364 YQHPALRKLMKRLVDELVPAAVDDVPAEIRARRGLVGRAEALREAHFPPAGTDPLHAAER 423

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
            +PA  RL ++EL   Q+AL + R+  + E GI  +       + +  +PF  T +QE A
Sbjct: 424 VTPAFRRLVFEELFFLQLALAMRRRGVRAEAGIAFDASPAALARAVEPLPFRLTGAQERA 483

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           + +I +DM+    M R+LQGDVGSGKT VA  AM  AV++G QA +M P  ILA+QH   
Sbjct: 484 LAEIARDMADAEPMNRLLQGDVGSGKTAVAFAAMMLAVQSGWQAALMVPTEILAEQHART 543

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           + ++ +   + V ++  +     +R+A   +A G+A I +GTHAL + ++ + +L LV+V
Sbjct: 544 LSRWLEGRGVEVALVGASARGKGQREARAAVAEGRARIAVGTHALLEQAVGFERLGLVVV 603

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQHRFGV QR  L  K   P VL+MTATPIPRTL L   GD+D SKI+E P GR P+ T
Sbjct: 604 DEQHRFGVMQRASLISKGRRPDVLVMTATPIPRTLALAFYGDLDQSKISELPPGRTPVTT 663

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519
            +   ++        +  L  G++ Y + P +EE ++++          L + F    I 
Sbjct: 664 RLFGDSQRKAAYALARGELEAGRQVYVVYPLVEESEKTDLADATTGAADLGKVFPGHEIG 723

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           ++HGRM   +K+ VMD F+ G   +L+ATTVIEVG+DV +AS++I+E+AE FGL+QLHQL
Sbjct: 724 LLHGRMKPEEKQRVMDRFRAGEVHVLVATTVIEVGVDVPNASVMIVEHAERFGLSQLHQL 783

Query: 580 RGRVGRGEEISSCILLYH-PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           RGRVGRG   S C+LL H      ++  RL  ++ T+DGF IA  DL+ R  GE+LG +Q
Sbjct: 784 RGRVGRGAAKSHCLLLAHFRRAGDDARERLRAMEETQDGFEIARVDLRIRGPGELLGTRQ 843

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           SG     +A     +++LE AR++A  ++ +D DL 
Sbjct: 844 SGQKLLDVADLYRDEAILEEAREEAFGLVERDGDLA 879


>gi|329116832|ref|ZP_08245549.1| ATP-dependent DNA helicase RecG [Streptococcus parauberis NCFD
           2020]
 gi|326907237|gb|EGE54151.1| ATP-dependent DNA helicase RecG [Streptococcus parauberis NCFD
           2020]
          Length = 671

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 249/690 (36%), Positives = 392/690 (56%), Gaps = 49/690 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPK-ISEISE 66
           L +P+S  +G+G K +    ++       E   I DLL Y+P  + D  ++ K + ++ +
Sbjct: 3   LQSPISELKGLGPKSAEKFHQL-------EIYTIEDLLIYYPFRYED--FKSKSVFDLQD 53

Query: 67  ERIVTITGYISQHSSFQL----QKRRPYKILLNDGTGEITLL---FFYRKTEMLKNVFFE 119
                +TG +   ++ Q     + R  +KI  ++    +      +   K E+ K V   
Sbjct: 54  GEKAVLTGQVVTPATVQYYGFKRNRLSFKIKQDELVIAVNFFNQPYLADKVEIDKEVAIF 113

Query: 120 GR----KITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-FPLIEAVYSLPTGLSVDLFKKI 174
           G+    K  +TG +K L +    + P  ++H  Q V+   LI+A+ +      +D  K+ 
Sbjct: 114 GKWDQKKAALTG-MKFLMSLEDDLQP--VYHTVQGVSQTALIKAIKAAFDANVLDQIKE- 169

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
                  +P L       LLQK       +A   +H P+  ++++    A  R+ ++EL 
Sbjct: 170 ------NIPAL-------LLQKYKLMPRQDAIRAMHFPKDLREYKL---ALRRIKFEELF 213

Query: 235 AGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q+ L L++   K E  G+ IN   +    ++ N+PF  T +Q  ++++IL DM   + 
Sbjct: 214 YFQMHLQLLKVANKSESSGLAINFSQEAVNAVITNLPFPLTGAQNKSLREILADMKSGHH 273

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT++A +AM AA  AG Q+ +M P  ILA+QHY+ + +   +  I   
Sbjct: 274 MNRLLQGDVGSGKTVIASLAMYAAYTAGFQSALMVPTEILAEQHYDSLSQLFPDLSI--A 331

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           I+   M  A RR AL  IA G   +I+GTHAL QD++QY+ L LVI DEQHRFGV+QR  
Sbjct: 332 ILKSGMKVAERRTALAAIADGSVDMIVGTHALIQDAVQYHHLGLVITDEQHRFGVKQRRI 391

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             +K   P VL+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +    +D+V+ 
Sbjct: 392 FREKGDNPDVLMMTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQELDKVLP 451

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKE 531
            +   +++G + Y I P IEE +  + ++ V   + L ++F  S  IA++HG+M + DK+
Sbjct: 452 WIMDEIAQGAQVYVISPLIEESEALDLKNAVALESELKDYFKESARIALMHGKMKNEDKD 511

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           ++M +FKN    LL++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG + S 
Sbjct: 512 AIMQAFKNKETDLLVSTTVIEVGVNVPNATIMMIMDADRFGLSQLHQLRGRVGRGHKQSY 571

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
            IL+ +P  + +   R+ ++  T DGF++AE DLK R  GEI G +QSG+P+F  A    
Sbjct: 572 AILVANPK-TDSGKKRMRIMTETTDGFVLAEADLKMRGSGEIFGTRQSGIPEFKTADIVE 630

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             ++LE AR+ A  I++Q       R Q+I
Sbjct: 631 DYNILEEARRIASEIVSQVAWQEDDRWQAI 660


>gi|15895013|ref|NP_348362.1| RecG helicase [Clostridium acetobutylicum ATCC 824]
 gi|15024704|gb|AAK79702.1|AE007683_1 RecG helicase [Clostridium acetobutylicum ATCC 824]
 gi|325509150|gb|ADZ20786.1| RecG helicase [Clostridium acetobutylicum EA 2018]
          Length = 678

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 238/676 (35%), Positives = 387/676 (57%), Gaps = 39/676 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE-ERIVT 71
           ++T +GVG K +L L+K   CG       +DLL Y P  + +      I E+ + ++++ 
Sbjct: 7   IATLKGVGPKTALKLNK---CGIFT---ILDLLLYFPRDYENLSLMSNILEVEDGQKVIV 60

Query: 72  ITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
               +     F+ + R+   KI+ +DG    + ++F +    +KN F      T+ GKIK
Sbjct: 61  KCTPLRLEKEFRSKSRKTVTKIIFSDGKTTFSGIWFNQP--YIKNKFKYNETYTIMGKIK 118

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV---LPE 187
           + KN I M +P  + + S   +   I   Y+L   L    F ++I E L  + +   +PE
Sbjct: 119 RTKNEITMNNPIPVENRSS--SDEKIVPKYALSGTLKNTFFIRLIFELLQNIKIDENMPE 176

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
           WI    ++K +F S+ E+   IH+PR   +   ++    RL + EL    + +L++++  
Sbjct: 177 WI----IKKNAFHSLDESLREIHSPRNMLELREST---RRLKFQELFTYSLKVLMLKEYI 229

Query: 248 KKEIGIPINVEG---KIAQKILR---NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           KK      N +G   KIA ++++   ++PF  T++Q   I++IL+D  +   M R++QGD
Sbjct: 230 KK------NNKGFAFKIAPELIKLKESLPFKLTEAQNLVIREILKDEKRPQAMNRLVQGD 283

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VALIA+   ++ G QAV+MAP  ILA+QH+E      +   I +E++TG++  
Sbjct: 284 VGSGKTIVALIAIFNVIKNGFQAVLMAPTEILAKQHFESANTLFKEFNIRIELLTGSVTD 343

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
            ++R   E++  G+  +IIGTHAL +D++++  L +V+ DE HRFGV QR +L  K    
Sbjct: 344 KNKRIIKEKLKDGEIDLIIGTHALIEDNVEFSNLGIVVTDELHRFGVMQRNRLFNKGNNI 403

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL L   GD+D+S I   P GRK +KT+ I  N   +        +  
Sbjct: 404 DVLVMTATPIPRTLALYLYGDLDVSIIDTLPPGRKEVKTLCIKKNSRQKAYNFALNEIKN 463

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKN 539
           G++ Y +CP +EE ++    SV + +  L   +   I I  +HG+M+  +K ++M+ F N
Sbjct: 464 GRQIYVVCPLVEENEKLELTSVEKLYEELKSSYFKGIKIEMLHGKMAPKEKNAIMERFNN 523

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L++TTVIEVG++V +AS++IIE+A+ FGLAQLHQLRGRVGRG+  S C+L+    
Sbjct: 524 KETIVLVSTTVIEVGVNVPNASVMIIEDAQRFGLAQLHQLRGRVGRGQYQSYCMLVAEMK 583

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +K +  R+ ++ ++ DGF I+EED K R  GE+ GI+QSG    +++      S+L  A
Sbjct: 584 -NKVAERRMEIMCSSSDGFYISEEDFKLRGSGEVFGIRQSGEDGLILSDIIQDISILREA 642

Query: 660 RKDAKHIL--TQDPDL 673
              AK ++  T+  D+
Sbjct: 643 NSAAKKLIISTEKSDI 658


>gi|332284439|ref|YP_004416350.1| ATP-dependent DNA helicase RecG [Pusillimonas sp. T7-7]
 gi|330428392|gb|AEC19726.1| ATP-dependent DNA helicase RecG [Pusillimonas sp. T7-7]
          Length = 699

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 232/641 (36%), Positives = 358/641 (55%), Gaps = 28/641 (4%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           +  G   SL   K+ + G    + F+    + P  + D      I+ +       + G +
Sbjct: 19  QAAGAGSSLIERKLRHLGLHQPSDFV---VHLPLRYEDETQITPIASVQPGAAAQVEGDV 75

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
            + S  Q + RR    ++ D TG++ L + +      K V   G++I V G+++      
Sbjct: 76  IR-SEVQFRPRRQLHAIIQDDTGQLALRWLHFYPNQQKQVE-AGKRIRVRGEVRNGFGGY 133

Query: 137 IMVHPHYIFHNSQDVNFPLIEA---VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
            MVHP            PL +A   +Y    GL     +K I  AL  +  L + +  +L
Sbjct: 134 EMVHPKV-----STAGMPLPQALTPIYPTTDGLPQTSLRKAIDAALG-VADLSDSLPVEL 187

Query: 194 LQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            Q+    S A+A  ++H+P      A   E   PA  R+ +DELLA Q++L   R   ++
Sbjct: 188 CQRYGLISFADAIRVLHHPPANVSYADLIEREHPAWVRIKFDELLAQQLSLAAARAARRR 247

Query: 250 EIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +    ++  +G + Q++ +++PF+ T +Q   I +I QD+ +   M R+LQGDVGSGKT+
Sbjct: 248 QRAPALSAAQGNLPQQLKQSLPFTLTGAQTRVIAEISQDLLRTFPMHRLLQGDVGSGKTI 307

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA  A A A+ +G Q  IMAP  ILA+QH+  ++ + +   + +  + G++    R+ A 
Sbjct: 308 VAAFAAAQAIASGCQVAIMAPTEILAEQHFHKLRAWLEPLGVRLAWLAGSLTGKQRKAAF 367

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--------ATA 420
           + +A  QA +++GT AL Q+ + +  L L+I+DEQHRFGV QRL+L++K        A  
Sbjct: 368 DAVASSQAQLVVGTTALIQEKVIFDNLGLIILDEQHRFGVGQRLELSRKGEDSLGGQALM 427

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH L M+ATPIPRTL +T   D+D+S I E P GR P+ T +I  NR DEV+  +   + 
Sbjct: 428 PHQLNMSATPIPRTLAMTFFADLDVSAIDELPPGRSPVLTKLIADNRRDEVLGSVMTEVR 487

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           +G++AYW+CP +EE +    ++ V+    L +      + +IHG+++  +K+ VM  F+ 
Sbjct: 488 QGRQAYWVCPLVEESEALQLQTAVDTHARLVQALPDMRVGLIHGKLATSEKQEVMQEFRA 547

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   LL+ATTVIEVG+DV +AS++IIE+AE FGLAQLHQLRGRVGRG   S C+L+Y  P
Sbjct: 548 GRIDLLVATTVIEVGVDVPNASLMIIEHAERFGLAQLHQLRGRVGRGSRQSICVLMYQAP 607

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           LS  +  RL  +  T DGF IA  DL+ R  GE LG++QSG
Sbjct: 608 LSAIARQRLRAMYETADGFEIARRDLELRGPGEFLGVRQSG 648


>gi|157692267|ref|YP_001486729.1| ATP-dependent DNA helicase RecG [Bacillus pumilus SAFR-032]
 gi|157681025|gb|ABV62169.1| DNA helicase RecG [Bacillus pumilus SAFR-032]
          Length = 682

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 243/652 (37%), Positives = 374/652 (57%), Gaps = 23/652 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS----SFQLQKRRPYKILLNDGT 98
           DLL Y P  + D   R  + E+  +  VT+ G +  HS    ++  +KR      L  G 
Sbjct: 33  DLLGYFPYRYDDYELR-NLEEVKHDERVTVEGKV--HSEPVLTYYGKKRSRLTFRLLVGR 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             IT + F R    LK     G  ++VTGK  K   + IMV       + QD +   IE+
Sbjct: 90  FLITAICFNRP--YLKRSLVLGDTVSVTGKWDK-NRQSIMVQEFKKGTHEQDGS---IES 143

Query: 159 VYSLPTGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VYS+   ++V + ++ + +ALS  +    + + K L+      S  EA   IH P     
Sbjct: 144 VYSVKENVTVKMMRRFVKQALSLYVDKAEDQLPKQLVSTYKLMSYQEALKTIHLPETRDS 203

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +    AR R  Y+E L  Q+ +  +RK+ + K  GI      +   + + ++PF  TK+
Sbjct: 204 LK---QARRRFVYEEFLIFQLKMQAIRKKEREKTSGIQHPFSKEAVFEFVHSLPFPLTKA 260

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   + +I+ DM+   RM R+LQGDVGSGKT VA IA+ AA  +G Q  +M P  ILA+Q
Sbjct: 261 QSRVLDEIMSDMASPYRMNRLLQGDVGSGKTAVAAIALYAAHLSGYQGALMVPTEILAEQ 320

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H + + +  +   + + ++T ++    RR+ LER+  G+  I++GTHAL QD +++ +L 
Sbjct: 321 HADSLYQLFEKWGLNIALLTSSVKGKRRRELLERLKEGEIDILVGTHALIQDEVEFQQLG 380

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV+QR KL  K   P VL MTATPIPRTL +T  G++D+S I E PAGRK
Sbjct: 381 LVITDEQHRFGVEQRKKLRSKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDELPAGRK 440

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I+T  +  + ++ ++  +   L +G++AY ICP IEE  + + ++ ++  + L E +  
Sbjct: 441 QIETYWVKHDMLERILAFVDKELKKGRQAYIICPLIEESDKLDVQNAIDVHSMLTEAYRG 500

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             SI ++HG+++  +K+ VM  F     ++L++TTV+EVG++V +A+I++I +A+ FGL+
Sbjct: 501 KWSIGLMHGKLASDEKDQVMRDFTANEVQILVSTTVVEVGVNVPNATIMVIYDADRFGLS 560

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRGE  S CIL+  P  S+    R+ ++  T DGF ++E+DL+ R  G+  
Sbjct: 561 QLHQLRGRVGRGEHQSFCILMADPK-SETGKERMRIMSETTDGFELSEKDLELRGPGDFF 619

Query: 635 GIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           G KQSGMP+F +A   +HD   LE ARKDA  ++  D   T    + +R  L
Sbjct: 620 GKKQSGMPEFKVADM-VHDYRALETARKDAAELVQSDAFWTDPEYKELRQTL 670


>gi|229098324|ref|ZP_04229271.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-29]
 gi|228685222|gb|EEL39153.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-29]
          Length = 682

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 232/663 (34%), Positives = 374/663 (56%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GSVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+     LL +       EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPD----GLLNRYKLLPRYEALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSTELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AA  A  Q  +M P  ILA+QHY+ + +      + VE++T ++  A 
Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSRFGMTVELLTSSVKGAR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L R+  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILARLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|90961599|ref|YP_535515.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118]
 gi|90820793|gb|ABD99432.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118]
          Length = 676

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 239/668 (35%), Positives = 380/668 (56%), Gaps = 40/668 (5%)

Query: 13  LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           +   RGVG K    L+K+ +N          DLL ++P  + D   +  + EI+ +  VT
Sbjct: 7   VGVLRGVGPKKIQALNKLGVNT-------IEDLLTFYPFRYNDIAVK-NLEEINSQEKVT 58

Query: 72  ITGYISQHS---SFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           + G ++       F  +K R  +K+L+N     +T   F+ +  + K V   G+++ V G
Sbjct: 59  LKGIVASEPVLVRFGRKKSRLNFKLLINHDVIGVT---FFNQPWISKQVT-TGQELAVYG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL----- 182
           K   L+  +  +    I   + D        VY     +   + K+++ +A         
Sbjct: 115 KYDALRQSLSGIK--IISRKTND-----FVGVYRSSKDIKESIIKQLVKQAYDEYNSYIK 167

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            V+PE I      K    +  +  + IH P   K+ +    AR    +DE  + +  L L
Sbjct: 168 DVVPESIRI----KYRLENRKQMIHDIHFPSTKKEADL---ARRSAIFDEFFSFEAGLQL 220

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +++   K +G+ I    +  ++ ++ +PF  TK+Q+  + +I  DM   N M R+LQGDV
Sbjct: 221 LKRDNHKNMGLRIKYNNEKLKEFIKGLPFELTKAQKRVVNEICADMLSPNHMNRLLQGDV 280

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ- 361
           GSGKT++A IAM A V AG QAV+MAP  ILAQQH E +    +   I V ++T +    
Sbjct: 281 GSGKTIIAAIAMYATVTAGFQAVLMAPTEILAQQHAEKLANLFEQYGISVALMTSSSLSR 340

Query: 362 -AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +R+ L+ + +G   I+IGTHA+ QD+I+++ L L I DEQHRFGV QR  L +K   
Sbjct: 341 VKVKRELLKHLKNGDIDIVIGTHAVIQDNIEFHNLGLAITDEQHRFGVNQRRILRKKGVN 400

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P +L MTATPIPRTL +T+ G++D+S I E P GR+P+KT  +   ++  V E +K  L 
Sbjct: 401 PEILAMTATPIPRTLAITTYGEMDVSIIDELPKGRQPVKTSWVKKKQVKNVFEFVKRQLE 460

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKN 539
            G +AY I P +EE +  + ++  E F    E+F S  +A++HG+M   +KE  M +FKN
Sbjct: 461 LGTQAYIISPLVEESELLDLQNAEEVFEKAKEYFGSEKVALLHGKMDANEKEQAMQAFKN 520

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L++TTVIEVG+DV +A+++II +A+ FGLAQLHQLRGRVGRG + S CIL+  P 
Sbjct: 521 KEVSILVSTTVIEVGVDVPNATVMIILDADRFGLAQLHQLRGRVGRGSKESYCILVADPK 580

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            S+    R+ ++  T DGFLI+++DL+ R  GE+LG KQSG+P+F +  P ++ ++L++A
Sbjct: 581 -SEYGKERMKIMTETNDGFLISQKDLELRGPGEVLGKKQSGLPEFKVGDPVVNLNILQVA 639

Query: 660 RKDAKHIL 667
           +++A +++
Sbjct: 640 QEEAHNVV 647


>gi|294339213|emb|CAZ87567.1| ATP-dependent DNA helicase recG [Thiomonas sp. 3As]
          Length = 719

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 246/687 (35%), Positives = 372/687 (54%), Gaps = 46/687 (6%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL------ND 96
           D+  + P  + D      +  + +  +VT    ++Q    Q+Q R P + LL        
Sbjct: 49  DIALHLPLRYEDETRLTPLGALRDGELVTTDAVVTQ---AQVQGRAPRRQLLVRLQDPEA 105

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL- 155
           G   +TL  F+     LK     G ++ V G++++      MVHP +      D N PL 
Sbjct: 106 GDAVLTLRLFHFYPNQLKT-LQPGVRLRVHGQVRQGLFGWEMVHPTWKL---VDANAPLP 161

Query: 156 --IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
             +  VY    G+     +K +  AL RL V  + + ++ L +   P +  +   +H P 
Sbjct: 162 NTLTPVYPTTAGVPQSYLRKAVAGALERL-VWRDTVPQEELTRHHLPDLPSSLRTLHAPP 220

Query: 214 KAKDFEWTS---PARERLAYDELLAGQIALLLMRKQFK--KEIGIPINVEGKIAQKILRN 268
            A      +   PA+ RL +DELLA Q+A    R Q +  K   +P           LR 
Sbjct: 221 AAALPALEAGAHPAQRRLKFDELLAQQLAQQQARAQRQRWKAPTLPAAPGAHSLPAQLRA 280

Query: 269 -IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            IPF+ T +QE  + +I  D++Q   M R+LQGDVGSGKT+VA +A A AV +G Q  +M
Sbjct: 281 AIPFTLTAAQERCVAEIAADLAQTAPMHRLLQGDVGSGKTVVAALAAAQAVASGWQCALM 340

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  ILA QH   +  + +   + V  ++G+  +  R  AL+R+A GQA +++GTHA+ Q
Sbjct: 341 APTEILAAQHARKLADWLEPLGVGVAWLSGSQTKKEREAALQRVASGQAQLVLGTHAVIQ 400

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--------PHVLLMTATPIPRTLVLTS 439
             +++ +L L IVDEQHRFGV QRL L     A        PH+L+M+ATPIPRTL +  
Sbjct: 401 AQVRFARLGLAIVDEQHRFGVAQRLALRDSLRAGTQGSGLQPHLLMMSATPIPRTLAMAL 460

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
            GD+D+S I   P GR P++T ++  +R DE+I R+  + ++G++AYW+CP +EE +  +
Sbjct: 461 FGDLDVSTIDVLPPGRTPVRTSVVSTDRRDELIARVGALTAQGRQAYWVCPLVEESETLD 520

Query: 500 FRSVVERFNSLHEHFTS-------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            ++ V     L     +        + ++HGRM   +K + M +F  G   LL+ATTVIE
Sbjct: 521 LQNAVATHAELSAALATRSGQGAVQVGLLHGRMKAQEKRATMQAFSAGEIGLLVATTVIE 580

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S C+LL+  PLS  +  RL  ++
Sbjct: 581 VGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAQSDCVLLFTSPLSPTARERLGAMR 640

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
              DGF +A++DL+ R  GE+LG++QSG+P    A       LLE AR  A+ +L   P+
Sbjct: 641 ELTDGFALAQKDLELRGPGELLGLRQSGVPGLRYADLAQDIDLLEAARDTAQRLLVAAPE 700

Query: 673 LTSVRGQSIRILLYLYQYNEAFQFIRA 699
             + R  + R L       E F ++ A
Sbjct: 701 --AARQHAARWL------GEGFDWLSA 719


>gi|221064802|ref|ZP_03540907.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni KF-1]
 gi|220709825|gb|EED65193.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni KF-1]
          Length = 731

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/670 (35%), Positives = 360/670 (53%), Gaps = 41/670 (6%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL  + P  + D      +    +   V I   ++ HS  QL+ RR  K+ ++DG+
Sbjct: 54  TRDIDLALHLPLRYEDETRIVPLKNARDGETVQIEATVT-HSEVQLRPRRMLKVTVDDGS 112

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--DVNFPLI 156
               L FF       K +   G ++ + G++K       M+HP +     +      P+ 
Sbjct: 113 STCVLTFFSFYPSQQKTMA-PGARLRIRGEVKGGFWGRQMMHPAFRVAGGELPTALTPVY 171

Query: 157 EAVYSLPTG-----LSVDLFKKIIVEAL--SRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209
            A  SLP       ++  L +  + E L   + P + ++  +D LQ      +  A   +
Sbjct: 172 PASASLPQAYLRRAIASALLRADLSETLPPEQSPPIAQFYGQDGLQPAY--DLRNALTFL 229

Query: 210 HNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM---RKQFKKEIGIPINVEGKIA 262
           H+P          + + PA +RL  +ELLA Q++       R + +  +  P      + 
Sbjct: 230 HHPTPDVALVTLEDHSHPAWQRLKAEELLAQQLSQYEAKRERARLRAPVLRPQAGMADLT 289

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+ L  +PF  T +Q+  + +I  DM ++  M R+LQGDVGSGKT+VA ++  A +EAG 
Sbjct: 290 QQFLAQLPFGLTGAQQRVVGEIRADMERRIPMHRLLQGDVGSGKTVVAALSAVACIEAGW 349

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQII----VEIITGNMPQAHRRKALERIAHGQAHI 378
           Q  +MAP  ILA+QH+  +  + +         V  + G   +  R   L  +  G+A +
Sbjct: 350 QCALMAPTEILAEQHFGKLVGWLEPILAPLGKKVAWLAGAQKKKERAAMLALVESGEAAL 409

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRT 434
           ++GTHA+ Q+ +Q+  L L ++DEQHRFGV QRL L QK  A    PH+L+M+ATPIPRT
Sbjct: 410 VVGTHAVIQEQVQFKNLALAVIDEQHRFGVAQRLALRQKLAATGMEPHLLMMSATPIPRT 469

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PI T +I  +R DEVIER+   ++ G++ YW+CP IEE
Sbjct: 470 LAMSYYADLDVSTIDELPPGRTPIVTKLISDSRKDEVIERIGAQVASGRQVYWVCPLIEE 529

Query: 495 KKESNFRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +  +  +      + HE+ + +     + ++H RM   +K++VM+ F  G   +L++TT
Sbjct: 530 SEALDLSNA----TATHEYLSETLPGVMVGLLHSRMPTAEKKAVMELFSAGVMGVLVSTT 585

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY----HPPLSKNSY 605
           VIEVG+DV +AS+++IE++E FGL+QLHQLRGRVGRG   S+C+LLY    +  LS    
Sbjct: 586 VIEVGVDVPNASLMVIEHSERFGLSQLHQLRGRVGRGAAASACVLLYSVNDNGRLSDTGK 645

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL  +  T DGF IA  DL+ R  GE LG +QSG P    A  E    LL+ AR+ A  
Sbjct: 646 ERLRAMAETNDGFEIARRDLEIRGPGEFLGARQSGAPMLRFADLEQDVLLLDWARELAPL 705

Query: 666 ILTQDPDLTS 675
           +L Q P L +
Sbjct: 706 MLEQFPALAA 715


>gi|149183210|ref|ZP_01861656.1| ATP-dependent DNA helicase [Bacillus sp. SG-1]
 gi|148849075|gb|EDL63279.1| ATP-dependent DNA helicase [Bacillus sp. SG-1]
          Length = 682

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 245/683 (35%), Positives = 384/683 (56%), Gaps = 29/683 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEERIV 70
           P++  +G+G + +L L+ + N  +  E     L+ Y P  + D  YR K ++E   E  V
Sbjct: 8   PVTEIKGIGDETALQLASM-NVQSVGE-----LIEYVPYRYED--YRLKDLAEAENEERV 59

Query: 71  TITGYISQHSS--FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           T+ G I    S  F  +K+    + L  G+  I   FF      LK        ITVTGK
Sbjct: 60  TVEGKIHSAPSLMFYGRKKSRLNVRLLAGSYLIQATFF--NQPYLKKKLNLQDTITVTGK 117

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPE 187
             K   +II V  + +  ++   +F   E VYSL   +     +K I  A       + E
Sbjct: 118 WDK-NRQIITVQQYSLGPHTAKGDF---EPVYSLKGSIKNQSLRKYIRTAFEHYGNEIHE 173

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            I   L  +    +  EA   +H P      +    AR R+ Y+E L  Q+ +  +RK F
Sbjct: 174 PIPGSLRTEYKLLNRKEALFNLHFPSSPNSLKH---ARRRMVYEEFLLFQLKMQALRK-F 229

Query: 248 KKE--IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           ++E   GI  N + +  ++ + ++PF  T +Q+  + +I  DM    RM R+LQGDVGSG
Sbjct: 230 EREHSNGISQNYDLQKVKEFINSLPFPLTDAQKRVVNEISADMKSPYRMNRLLQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA IA+ +++ AG Q  +M P  ILA+QH E + +      I   ++T ++    R+
Sbjct: 290 KTVVAAIALFSSITAGYQGALMVPTEILAEQHAESLSELLAPAGINTALLTSSVKGKRRK 349

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
             L+++A G+  ++IGTHAL QD + +  L +VI DEQHRFGVQQR  L +K  +P VL 
Sbjct: 350 LLLQKLADGEIDVLIGTHALIQDEVNFKNLGMVITDEQHRFGVQQRRVLREKGESPDVLF 409

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  G++D+S I E PAGRK I+T     ++++ V++ ++  LS+G++A
Sbjct: 410 MTATPIPRTLAITVFGEMDVSIIDEMPAGRKTIETYWAKQDKLERVLDFMEKELSQGRQA 469

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP IEE  + + ++ ++    L  +F     + ++HGR+   +K+ VM +F     +
Sbjct: 470 YVICPLIEESDKLDVQNAIDVHAQLEFYFQDRYKVGLMHGRLHSDEKDEVMKAFSRNEIQ 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S CILL  P     
Sbjct: 530 VLVSTTVVEVGVNVPNATMMVIYDAERFGLSQLHQLRGRVGRGSEQSYCILLADPKTDVG 589

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662
              R+ ++  T DGF ++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE+AR D
Sbjct: 590 K-ERMRIMAETNDGFELSEKDLELRGPGDFFGKKQSGLPEFKVADM-IHDYRALEVARND 647

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
           A+ ++  D    +   +++R  L
Sbjct: 648 AQRLIQSDEFWHASEYEALRRFL 670


>gi|145629154|ref|ZP_01784953.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           22.1-21]
 gi|144978657|gb|EDJ88380.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           22.1-21]
          Length = 569

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/550 (39%), Positives = 332/550 (60%), Gaps = 18/550 (3%)

Query: 140 HPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197
           HP Y  +  N+  V    +  +YS   GL  +  +K+  +AL+   +L +    ++L  +
Sbjct: 6   HPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALA---LLDKVQIAEILPNE 62

Query: 198 SFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKE 250
             P   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  +R   ++ 
Sbjct: 63  FNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKVRLGTQQF 122

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +   M+R++QGDVGSGKTLVA
Sbjct: 123 SALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVGSGKTLVA 182

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +    R+  LE+
Sbjct: 183 ALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGKSRQAELEK 242

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLM 426
           I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K       PH L+M
Sbjct: 243 IKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAGFYPHQLIM 302

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEGKKA 485
           TATPIPRTL +T   D+D S I E P GR PI TV++   R  E++ R+K   ++E ++A
Sbjct: 303 TATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNACVNEKRQA 362

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           YW+C  I+E +    ++    +  L +     +I ++HGRM   +K+ VM  FKN    L
Sbjct: 363 YWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAELDL 422

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y PPL K S
Sbjct: 423 LVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKVS 482

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +A       ++   +  AK
Sbjct: 483 QKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMIPTVQHYAK 542

Query: 665 HILTQDPDLT 674
            ++ + PD+ 
Sbjct: 543 LLIQKYPDVA 552


>gi|212691804|ref|ZP_03299932.1| hypothetical protein BACDOR_01299 [Bacteroides dorei DSM 17855]
 gi|237708604|ref|ZP_04539085.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 9_1_42FAA]
 gi|237724128|ref|ZP_04554609.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D4]
 gi|265755202|ref|ZP_06089972.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_33FAA]
 gi|212665705|gb|EEB26277.1| hypothetical protein BACDOR_01299 [Bacteroides dorei DSM 17855]
 gi|229437588|gb|EEO47665.1| ATP-dependent DNA helicase RecG [Bacteroides dorei 5_1_36/D4]
 gi|229457304|gb|EEO63025.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 9_1_42FAA]
 gi|263234344|gb|EEZ19934.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_33FAA]
          Length = 698

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 245/671 (36%), Positives = 382/671 (56%), Gaps = 21/671 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74
            +GVG + +  L+K +N  + +     DLL+Y P  ++DR     I EI      + + G
Sbjct: 12  LQGVGPQRATVLNKELNLFSLH-----DLLYYFPYKYVDRSRLYYIHEIDGNMPYIQLKG 66

Query: 75  YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
            I    +F   ++R      +DGTG I L++F     +L++ +    +  V GK      
Sbjct: 67  EILSFETFGEGRQRRLVGHFSDGTGIIDLVWFQGIKYLLEH-YKTKTEYIVFGKPTVFNG 125

Query: 135 RIIMVHPHYIFHNSQDVNFPLIEAVYS----LPTG-LSVDLFKKIIVEALSRL-PVLPEW 188
           RI + HP         ++   ++  Y+    +  G L+    ++++  AL+ L   L E 
Sbjct: 126 RINVAHPDMDPSGELTLSTMGLQPYYNTTERMKRGFLNSHGLERLMKNALALLQEPLAET 185

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   L+++    S+ EA   IH P   K+ E    A+ RL ++EL   Q+ +L   K  +
Sbjct: 186 LPPQLVEEHHLMSLDEAIRNIHFP---KNPELLRKAQYRLKFEELFYVQLNILRYSKDRQ 242

Query: 249 KEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           ++  G+     G+I      +N+PF  T +Q+  IK+I +DM    +M R+LQGDVGSGK
Sbjct: 243 RKYRGLRFERVGEIFNTFYSQNLPFELTGAQKRVIKEIRKDMGSGRQMNRLLQGDVGSGK 302

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVAL++M  A++ G QA +MAP  ILA QHYE I+K+     + VE++ G++    R K
Sbjct: 303 TLVALMSMLIALDNGYQACMMAPTEILAAQHYETIRKFLFGMDVRVELLMGSVKGKKREK 362

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLL 425
            L  +  G   I+IGTHA+ +D++ +  L +V++DEQHRFGV QR KL  K    PHVL+
Sbjct: 363 ILRDLLTGDVQILIGTHAVLEDTVGFSSLGMVVIDEQHRFGVAQRAKLWSKNVCPPHVLV 422

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    NR   +   ++  + EG++ 
Sbjct: 423 MTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRRASLYASIRKQIEEGRQI 482

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           Y + P I+E ++ + +++ E +  +   F    ++ +HG+M   +K++ M  F +G  ++
Sbjct: 483 YIVYPLIKESEKMDIKNLEEGYELICAEFPDCQVSKVHGKMKPAEKDAEMQRFVSGDTQI 542

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           ++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL+    L++ +
Sbjct: 543 MVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLTEET 602

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDA 663
             RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R  A
Sbjct: 603 RKRLEIMVQTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQYVRDVA 662

Query: 664 KHILTQDPDLT 674
             I+ +DP  T
Sbjct: 663 NRIVDEDPTGT 673


>gi|194015058|ref|ZP_03053675.1| ATP-dependent DNA helicase RecG [Bacillus pumilus ATCC 7061]
 gi|194014084|gb|EDW23649.1| ATP-dependent DNA helicase RecG [Bacillus pumilus ATCC 7061]
          Length = 682

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 243/652 (37%), Positives = 372/652 (57%), Gaps = 23/652 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS----SFQLQKRRPYKILLNDGT 98
           DLL Y P  + D   R  + E+  +  VT+ G +  HS    ++  +KR      L  G 
Sbjct: 33  DLLGYFPYRYDDYELR-NLEEVKHDERVTVEGKV--HSEPVLTYYGKKRSRLTFRLLVGR 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             IT + F R    LK     G  ++VTGK  K   + IMV       + QD +   IE 
Sbjct: 90  FLITAICFNRP--YLKRSLVLGDTVSVTGKWDK-NRQSIMVQEFKKGTHEQDGS---IEP 143

Query: 159 VYSLPTGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VYS+   ++V + ++ + +ALS  +    + + K L+      S  EA   IH P     
Sbjct: 144 VYSVKENVTVKMMRRFVKQALSLYVDKAEDPLPKQLVSTYKLMSYQEALKTIHLPETRDS 203

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +    AR R  Y+E L  Q+ +  +RK+ + K  GI          + + ++PF  TK+
Sbjct: 204 LK---QARRRFVYEEFLIFQLKMQAIRKKEREKTSGIQHPFSKDAVFEFVHSLPFPLTKA 260

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   + +I+ DM+   RM R+LQGDVGSGKT VA IA+ AA  +G Q  +M P  ILA+Q
Sbjct: 261 QSRVLDEIMSDMASPYRMNRLLQGDVGSGKTAVAAIALYAAHLSGYQGALMVPTEILAEQ 320

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H + + +  +   + + ++T ++    RR+ LER+  G+  I++GTHAL QD +++ +L 
Sbjct: 321 HADSLYQLFEKWGLNIALLTSSVKGKRRRELLERLKEGEIDILVGTHALIQDEVEFQQLG 380

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV+QR KL  K   P VL MTATPIPRTL +T  G++D+S I E PAGRK
Sbjct: 381 LVITDEQHRFGVEQRKKLRSKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDELPAGRK 440

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I+T  +  + +D ++  +   L +G++AY ICP IEE  + + ++ ++  + L E +  
Sbjct: 441 QIETYWVKHDMLDRILAFVDKELKKGRQAYIICPLIEESDKLDVQNAIDVHSMLTEAYRG 500

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             SI ++HG+++  +K+ VM  F     ++L++TTV+EVG++V +A+I++I +A+ FGL+
Sbjct: 501 KWSIGLMHGKLASDEKDQVMRDFTANEVQILVSTTVVEVGVNVPNATIMVIYDADRFGLS 560

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRGE  S C+L+  P  S+    R+ ++  T DGF ++E+DL+ R  G+  
Sbjct: 561 QLHQLRGRVGRGEHQSFCVLMADPK-SETGKERMRIMSETTDGFELSEKDLELRGPGDFF 619

Query: 635 GIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           G KQSGMP+F +A   +HD   LE ARKDA  ++  D   T    + +R  L
Sbjct: 620 GKKQSGMPEFKVADM-VHDYRALETARKDAAELVQSDAFWTDSEYKELRQTL 670


>gi|146300684|ref|YP_001195275.1| ATP-dependent DNA helicase RecG [Flavobacterium johnsoniae UW101]
 gi|146155102|gb|ABQ05956.1| ATP-dependent DNA helicase RecG [Flavobacterium johnsoniae UW101]
          Length = 702

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 251/691 (36%), Positives = 388/691 (56%), Gaps = 42/691 (6%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P+   +GVG      L K +        ++ DL+ ++P+ +IDR    KI+E+  
Sbjct: 4   NLLETPIEYLKGVGPSRGQLLRKELGI-----HKYGDLVNFYPNRYIDRTRYYKINELQN 58

Query: 67  E-RIVTITGYISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
               V I G I    + +  K +   +    D TG+I L +F +  + ++        + 
Sbjct: 59  TGSEVQIIGKIINIKTVEFAKNKKRLVASFVDDTGQIELNWF-QGHKWIRESLKLNEPLV 117

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVY-SLPTGLSVDLFKKIIVEALSRL 182
           + GK     ++  M HP     +  + +    ++ VY S  T  +  +  + I + + +L
Sbjct: 118 IFGKCSLYGSQFSMAHPEIELLSEHEKSLRSAMQPVYPSTETLTNRGISNRTINKMMEQL 177

Query: 183 PVLPEWIEKDLLQKKSFPSI-----------AEAFNIIHNPRKAKDFEWTSPARERLAYD 231
                +IE   L  ++FP             A  FNI H P+ A   +  + A+ RL ++
Sbjct: 178 -----FIETGALFTETFPPYLLEEVKLISKRAALFNI-HFPKSA---DALAKAQFRLKFE 228

Query: 232 ELLAGQIALL---LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQD 287
           EL   Q+ L+   L+RK   K  G P    G++  +  +N +PF  T +Q+  IK+I  D
Sbjct: 229 ELFFIQLQLITKNLIRKHKIK--GHPFTKVGELFNEFYQNHLPFDLTNAQKRVIKEIRSD 286

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           M    +M R+LQGDVGSGKT+V  ++M  A++ G QA +MAP  ILA QH+  + ++   
Sbjct: 287 MGSNAQMNRLLQGDVGSGKTIVGFMSMLLAIDNGFQACLMAPTEILANQHFIGLSEFANT 346

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             I ++I+TG+   + RR   E + +G   I+IGTHAL +D +++  L L I+DEQHRFG
Sbjct: 347 LNISIKILTGSTKTSERRIIHEDLENGSLQILIGTHALLEDKVKFKNLGLAIIDEQHRFG 406

Query: 408 VQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-IIPI 465
           V+QR KL +K    PHVL+MTATPIPRTL ++  GD+D+S I E P GRKPI+TV     
Sbjct: 407 VEQRSKLWKKNEIPPHVLVMTATPIPRTLAMSLYGDLDVSVIDELPPGRKPIQTVHRFDT 466

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIH 522
           NR+ +V + L+  +++G++ Y + P I+E ++ +++ +++ + S+   F     SI+I+H
Sbjct: 467 NRL-KVWKFLRDEIAKGRQIYIVYPLIQESEKMDYKDLMDGYESISRDFPLPQYSISIVH 525

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M   DK++ M  F  G   +++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGR
Sbjct: 526 GKMKPADKDAEMKRFSEGKTNIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGR 585

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG E S CIL+    LS +S TR+  +  T DGF IAE DLK R  G+++G +QSG+ 
Sbjct: 586 VGRGAEQSYCILMTGHKLSSDSKTRMETMVQTNDGFEIAEVDLKLRGPGDLMGTQQSGVL 645

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
              IA       +L  AR  A  IL +DP L
Sbjct: 646 NLQIADIVKDREILSFARNYALKILKEDPPL 676


>gi|147669719|ref|YP_001214537.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. BAV1]
 gi|146270667|gb|ABQ17659.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. BAV1]
          Length = 818

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 227/657 (34%), Positives = 367/657 (55%), Gaps = 33/657 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL+Y P+  +D     KIS++      TI   + Q     +  RR  + +L D TG + 
Sbjct: 148 DLLYYFPNRHLDYSRLKKISQLEAGPEQTIIANVWQSKVNFMSGRRSTEAVLGDDTGNMR 207

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVY 160
            ++F     M++N+    R + ++G++   + R +   P +  +   +  ++   +  VY
Sbjct: 208 AVWF-NNPYMVRNLKPNAR-VVLSGRVSIFQGRPVFESPEWEELPDEADLIHTGRLVPVY 265

Query: 161 SLPTGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
            L  GL     ++++   +    P + +++  + L++     ++EA    H P    D E
Sbjct: 266 PLTAGLHQRSLRRLMKNFIDISSPNISDFMPAETLKRTRLLPLSEAIRQAHFP---DDEE 322

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
             + AR RLA+DEL   Q+ +L  +K++ ++ G  +NV      + +  +PF  T +Q  
Sbjct: 323 LKNAARNRLAFDELFILQLGVLAKKKRWHEQAGRALNVNIPDIDRFVSKLPFKLTDAQTK 382

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            + DI  D+S+   M R+LQG+VGSGKT+VA+I++  A   G Q   MAP  ILA+QH++
Sbjct: 383 CLADIKADISKGVPMSRLLQGEVGSGKTIVAVISLFTAASNGLQGAFMAPTEILAEQHFK 442

Query: 340 FIKK---------------YT----QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            + +               YT     +  + V ++  +M  + +    E+I  G+  I I
Sbjct: 443 SVTRLFASIARVSTLLDGIYTFEGLLDRPLKVALLISDMKGSQKDILKEKIKKGEVDIAI 502

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTHAL Q  I++  L L ++DEQHRFGV+QR  L  K   PH+L+MTATPIPRTL LT  
Sbjct: 503 GTHALIQKEIRFKSLGLAVIDEQHRFGVEQRSALRSKGLNPHILIMTATPIPRTLALTLY 562

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           GD+D+S I E P GR+ IKT  +   + +     ++  + EG++A+ ICP +EE +    
Sbjct: 563 GDLDLSVIDELPPGRQSIKTRWLKPEQRNSAYTFIRKQIQEGRQAFIICPLVEESEVIQA 622

Query: 501 RSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           ++    + +L       S +A++HGRM+  +KE++M  F  G   +L++T VIEVGID+ 
Sbjct: 623 KAATAEYETLSREVFPESRVALLHGRMNASEKETIMRHFSEGEMDILVSTPVIEVGIDIP 682

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A+++++E+A+ FGL+QLHQ RGRVGRG E S C+ L   P S     RLS++++T+DGF
Sbjct: 683 NAAVMLVESADRFGLSQLHQFRGRVGRGTEQSYCMFLAENP-SLLGQERLSIIESTQDGF 741

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLT 674
            +AEEDL+ R  GE  G +QSG+PK  +A   + D  LLE ARK+A  +   DP+L+
Sbjct: 742 KLAEEDLRLRGPGEFFGTRQSGLPKLRMAS--ISDVGLLEQARKEATRLFELDPELS 796


>gi|28210919|ref|NP_781863.1| ATP-dependent DNA helicase recG [Clostridium tetani E88]
 gi|28203358|gb|AAO35800.1| ATP-dependent DNA helicase recG [Clostridium tetani E88]
          Length = 683

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 245/698 (35%), Positives = 379/698 (54%), Gaps = 50/698 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           ++  +   +GVG K    L+K   CG       IDLL Y P  +        + +  E++
Sbjct: 3   IYNSVGVLKGVGPKTLENLNK---CGIFT---IIDLLLYFPRDYKIIKTCTSLKDALEKQ 56

Query: 69  IVTITGYISQHSSFQLQKRRPYK---------ILLNDGTGEITLLFFYRKTEMLKNVFFE 119
            + IT  +       L+ +R  +         I+L +    I   +F +    +KN F  
Sbjct: 57  EIIITAEV-------LEIKRDVRTRSGKVISTIILQNEEERIKCRWFNQP--YIKNRFRI 107

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVE 177
           G+K T+ GK+   K   ++++P  +  N++  N    ++  +Y L  G+  +   K+I +
Sbjct: 108 GKKYTLNGKLDVYKGEKLIINPKTVEKNAEATNCTKEIVIPIYPLREGVKNNTLVKLIKD 167

Query: 178 ALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            L +L +   LP WI    ++K +F S+ E+   IHNP      E+   A+ RL + EL 
Sbjct: 168 VLDKLIIDENLPTWI----MKKYNFCSLDESIRAIHNPISESQLEF---AKRRLKFQELF 220

Query: 235 AGQIALLLM---RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
              + + L+   RKQ  K  GI   +  +   K+   + F  TK+Q+  +++IL+D ++ 
Sbjct: 221 TYSLKIALLKESRKQSNK--GISFKIYKEEINKLQDKLNFQLTKAQKIVLEEILKDQNKN 278

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVGSGKT++A+I +      G Q V+M P  ILAQQH+  IK       I 
Sbjct: 279 ISMNRLVQGDVGSGKTILAIITLLNVAMNGYQGVLMVPTEILAQQHFIEIKNLLSEFNIR 338

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++ G+     +      +  G+  IIIGTHAL +D +++ KL +VI DEQHRFGV QR
Sbjct: 339 VELLCGSTSNKEKSNIKAALKGGEIDIIIGTHALIEDDVEFEKLGIVITDEQHRFGVMQR 398

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            KL  K     +L+MTATPIPRTL L   GD+DIS I E P GR+ + T  I   + D +
Sbjct: 399 NKLFTKGEGADILVMTATPIPRTLSLYLYGDLDISIIDELPPGRQKVDTYFINEKKRDRI 458

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDID 529
                  ++EG++ Y +CP +EE  +    SV E +  L E++ + I   I+HG+M+  +
Sbjct: 459 YSFALKEINEGRQVYVVCPLVEENDQLELTSVEELYKDLKENYFNEIEMEILHGKMTPKE 518

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K  +M  FKN   K+LI+TTVIEVGI+V +A+I+++E AE FGLAQLHQLRGRVGRG E 
Sbjct: 519 KNDIMLRFKNNEIKILISTTVIEVGINVPNATIMVVEGAERFGLAQLHQLRGRVGRGSEK 578

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S CIL+ +   + N+  R+  L  + DGF IAE+DLK R  GE+ G +Q G    +++ P
Sbjct: 579 SYCILMGNIK-NMNTRKRMETLVKSNDGFFIAEQDLKIRGSGELFGFRQHGEENLILSNP 637

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
                +L+IA  +++ +      L S + + ++IL YL
Sbjct: 638 IEDIEILKIAHNESQEL------LKSNKKEDLKILGYL 669


>gi|283781500|ref|YP_003372255.1| ATP-dependent DNA helicase RecG [Pirellula staleyi DSM 6068]
 gi|283439953|gb|ADB18395.1| ATP-dependent DNA helicase RecG [Pirellula staleyi DSM 6068]
          Length = 699

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 232/703 (33%), Positives = 376/703 (53%), Gaps = 25/703 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEE 67
           L  P+   RG+G   + +L ++       E R   D+LF  P S+ D     ++S++ E 
Sbjct: 11  LATPVEEIRGIGPARAPYLHRL-------ELRTARDVLFCFPRSYQDMSELREVSQLEEG 63

Query: 68  RIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            + ++ G + +     L+  R    +L+  GT  I  ++F +    L++ +  GR++ V+
Sbjct: 64  VMASVVGVVEEVDFRPLRNGRTLLAVLVRQGTQYIRCMWFSQG--FLRDKYKPGRRVLVS 121

Query: 127 GKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           G  K    R    HP   +  + +D     I  VYSL  G++    ++++   + +    
Sbjct: 122 GAPKLQGLRWEFTHPRTQMLADDEDAPTGRILPVYSLTDGITQTQMRRMVQNVVEKYSEY 181

Query: 186 PEWIEKDLLQKK-SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
            E +  D L+K      I+EA   +H P   +  E    AR R  Y ELL  Q+AL   +
Sbjct: 182 LEEVFPDELRKAHDLLPISEATLEVHFPTSKERLEG---ARRRFIYQELLVLQLALCWRK 238

Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + +     +P+ ++ +I  +I R +PF+ T+SQ   I +I  DM +   M R+LQGDVG
Sbjct: 239 SRLETNCTAVPMPIDARIDARITRLLPFALTESQRQVINEITADMGRDRPMNRLLQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ AM   V  G QA +MAP  +LA+QH   +      +++ +  +TG+MP   
Sbjct: 299 SGKTVVAMFAMLLTVAHGRQAALMAPTEVLARQHARTLADRLAASRVRIACVTGSMPTGE 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDS----IQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
           R++ L +I  G+  I++GTHA+   +    + + KL LV++DEQH+FGV+QR  L     
Sbjct: 359 RKQTLAKIQQGEIDIVVGTHAIAASAGGSDLPFAKLGLVVIDEQHKFGVRQRAALKGAGE 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRT+ LT  GD+++S +T  P GR+ + T  +   R +      +  L
Sbjct: 419 NPHYLVMTATPIPRTISLTLFGDLEVSTLTGTPPGRQKVNTYCVGDERREGWWNFFRKRL 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSF 537
           +EG++ Y I P +E+ +    +SV   +  L E     I   ++HG+MS  +K+ ++  F
Sbjct: 479 AEGRQGYVIAPLVEQSEHIEAQSVTTLYEKLSEGELQGIRCGMLHGKMSSTEKDEILTRF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + G  ++LIAT VIEVGIDV +A+++ IE+ E FGLAQLHQLRGRV RG+    C +   
Sbjct: 539 EAGKLQVLIATPVIEVGIDVPNATLMTIEDGERFGLAQLHQLRGRVTRGQHPGFCCVFAQ 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           P  ++ S  RL+    + DGF +AE D + R  G++LG KQ G+P   +A       +L 
Sbjct: 599 PS-TEESQQRLAAFTQSTDGFELAEIDFRLRGPGDLLGTKQHGLPPLRMADLVRDREILL 657

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            AR DA+ +L + P+L +     +R ++ L +Y +       G
Sbjct: 658 KARVDAQQMLLESPELATQELAKLRRMV-LVRYGKTLDLGSVG 699


>gi|225869886|ref|YP_002745833.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047]
 gi|225699290|emb|CAW92639.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047]
          Length = 671

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 232/634 (36%), Positives = 368/634 (58%), Gaps = 25/634 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL Y+P  + D   +  +  +  E+ V +TG +    S Q    +  ++      GE+ 
Sbjct: 31  DLLLYYPFRYEDFKSKSALELLDGEKAV-LTGRVVTPPSVQYYGFKRNRLSFKLKQGELV 89

Query: 103 L-LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
           + + F+ +  +L+ +  + +++ + G+  + K  +  +       +        ++ VY 
Sbjct: 90  ISVSFFNQPYLLEKIVLD-QEVAIFGRWDQKKAALTGMKLLMTLEDD-------LQPVYH 141

Query: 162 LPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           +  G+S     K I  A     L  L E + + L+QK        A   +H P+  +D++
Sbjct: 142 VAQGISQPTLIKAIRSAFDSGALAQLEENLPEPLIQKYRLLPRQAAVYAMHFPKHMEDYK 201

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKE---IGIPINVEGKIAQKILRNIPFSPTKS 276
               A  R+ ++E    Q+ L +++   K E   + IP + +  +A+KI   +PFS T++
Sbjct: 202 ---QALRRIKFEEFFYFQMNLQVLKLANKAEGNGLAIPFHQQA-VAKKI-AALPFSLTRA 256

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+ ++++IL DM+    M R+LQGDVGSGKT++A +AM AA  AG Q+ +M P  ILA+Q
Sbjct: 257 QQRSLEEILADMTSGAHMNRLLQGDVGSGKTVIASLAMYAAQTAGFQSALMVPTEILAEQ 316

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY+ + +   +  I   ++T  M  A +R AL  IA G   +I+GTHAL QD++ Y+KL 
Sbjct: 317 HYDSLCQLFPDLSI--ALLTSGMKAAEKRAALSAIADGSVDMIVGTHALIQDAVTYHKLG 374

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV QR    +K   P VL+MTATPIPRTL +T+ G++D+S I E PAGRK
Sbjct: 375 LVITDEQHRFGVNQRRLFREKGNNPDVLMMTATPIPRTLAITAYGEMDVSIIDELPAGRK 434

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514
           PI T  +   ++D V+  +K  L++G +AY I P IEE +  + ++ V     L ++F  
Sbjct: 435 PIITRWVKHRQLDSVLAWVKTELAKGTQAYVISPLIEESETLDLKNAVALEAELKDYFKA 494

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           ++S+A++HG+M   DKE +M  FK     +L++TTVIEVG++V +A+I++I NA+ FGL+
Sbjct: 495 SASVALMHGKMKADDKEMIMQRFKAKEIDVLVSTTVIEVGVNVPNATIMLIMNADRFGLS 554

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG + S  IL+  P  + +   R++++  T DGF++AE DLK R  GEI 
Sbjct: 555 QLHQLRGRVGRGSKQSYAILVADPK-TDSGKERMTIMTTTNDGFVLAEADLKLRGSGEIF 613

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           G +QSG+P+F  A       +LE AR+ A  I+ 
Sbjct: 614 GTRQSGLPEFKTADIVEDYHILEEARRVAAEIVA 647


>gi|304437335|ref|ZP_07397294.1| DNA helicase RecG [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369591|gb|EFM23257.1| DNA helicase RecG [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 706

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 242/671 (36%), Positives = 365/671 (54%), Gaps = 42/671 (6%)

Query: 1   MRPSFLNP------LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID 54
           MR  FL        L   ++  RGVG K +  L+++            DLL ++P ++ D
Sbjct: 7   MRQPFLKEWRKRVNLTDSVNAVRGVGVKKAALLARL------GVRTVYDLLTFYPRAYED 60

Query: 55  RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTE 111
           +    +I +++     T+ G I Q    Q  +RR + +L   + DGTG    ++F ++  
Sbjct: 61  QSRITRIMDLAAGTRATVHGVIQQVVERQ-TRRRGFTVLTALVGDGTGYAQAVWFNQR-- 117

Query: 112 MLKNVFFEGRKITVTGKIKKL-----KNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTG 165
            LK     G++I +TGK+        +     V    +  + +D    L I  VY+   G
Sbjct: 118 FLKGKLRAGQRILLTGKVDYAYGGGGQMAFSPVTSFALLGSQEDATAHLGILPVYAATEG 177

Query: 166 LSVDLFKKIIVEALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
           L+    +++  + L+      +  LPE I  +          A AF  IH P   KD E 
Sbjct: 178 LTQKQLRQMTADVLAHAGEALMETLPEQIRAEY----HLIGRAAAFRQIHFP---KDTEE 230

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            + AR RLA++EL   Q  LL ++KQ  + E GI     G +  ++   +PF+ T+ QE 
Sbjct: 231 LAAARRRLAFEELYLIQCGLLALKKQTAEHEEGIAHRANGALIARVRDALPFALTEDQEK 290

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
              +I +DM     M R++QGDVGSGKT +AL+A+   VE+G Q  +MAP  ILA+QHY+
Sbjct: 291 VWAEISRDMEAPLPMRRLVQGDVGSGKTAIALLALVKTVESGCQGALMAPTEILARQHYD 350

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            +++      I V  ++G + +    + L  +A  +  IIIGTHAL Q+ + +  L LV+
Sbjct: 351 GLRELLTPLGIRVGFLSGRLTKKEHTEVLSALAAHEIDIIIGTHALIQEGVAFDSLGLVV 410

Query: 400 VDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            DEQHRFGV QR  L +K+   P VL+MTATPIPRT+ LT  GD+D+S+I   P GR+PI
Sbjct: 411 TDEQHRFGVAQRSALEKKSGVVPDVLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRQPI 470

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T +       ++   ++  +  G++AY +CP IE  +ES+  S  E +  L       I
Sbjct: 471 RTFLRDETARAKIYAFVRREIERGRQAYVVCPLIEANEESDLPSAEEVYAELSRGSFCGI 530

Query: 519 --AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
              ++HGR+   DKE+VM  F  G  KLL+ATTVIEVG++V +A+++++E+AE FGLAQL
Sbjct: 531 RCGLVHGRLKAADKEAVMRGFYAGEIKLLVATTVIEVGVNVPNATVLVVEHAERFGLAQL 590

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG + S CIL+    ++     RL V++ T DGF +AEEDL+ R  G+  G 
Sbjct: 591 HQLRGRVGRGSDASYCILIAGRQVAGAE--RLRVIEETSDGFRLAEEDLRLRGPGQFFGA 648

Query: 637 KQSGMPKFLIA 647
            Q G+    IA
Sbjct: 649 MQHGLGDLKIA 659


>gi|257899371|ref|ZP_05679024.1| ATP-dependent DNA helicase RecG [Enterococcus faecium Com15]
 gi|257837283|gb|EEV62357.1| ATP-dependent DNA helicase RecG [Enterococcus faecium Com15]
          Length = 678

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 233/665 (35%), Positives = 379/665 (56%), Gaps = 27/665 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           ++  VT+ G +      + F  +K R  ++++       ++  FF +    LK       
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILSE 109

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +I V GK      R  +     +   + D   P+     S+     VDL KK   E  + 
Sbjct: 110 EIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT- 166

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
             ++ E +  +L++K      A A   +H P   K+ E    A+ R+ ++E    Q+ L 
Sbjct: 167 --LIEENLPNNLVEKYRLLDRASAVRSMHFP---KNHEENHQAKRRVVFEEFFLFQMRLQ 221

Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++K  K E  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQG
Sbjct: 222 GLKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQG 281

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ V ++TG+  
Sbjct: 282 DVGSGKTVVAAIALYATVIAGFQGALMVPTEILAQQHMESLQQLFDPNEVTVALLTGSTK 341

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+ LE++  G+ +++IGTHAL QD +++  L LVI DEQHRFGV QR  L +K   
Sbjct: 342 TKERRELLEKLERGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWR 401

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  +  L+
Sbjct: 402 PDVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKELA 461

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538
            G + Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK
Sbjct: 462 RGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFK 521

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +   ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P
Sbjct: 522 DNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANP 581

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F IA      ++LE+
Sbjct: 582 K-NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEV 640

Query: 659 ARKDA 663
           AR++A
Sbjct: 641 AREEA 645


>gi|229541126|ref|ZP_04430186.1| ATP-dependent DNA helicase RecG [Bacillus coagulans 36D1]
 gi|229325546|gb|EEN91221.1| ATP-dependent DNA helicase RecG [Bacillus coagulans 36D1]
          Length = 682

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/684 (34%), Positives = 381/684 (55%), Gaps = 28/684 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           +PL  P+S  +G+G++    L      G        DLL Y P  + D   +  + E+  
Sbjct: 3   SPLDQPVSVLKGIGEETEASL------GQMGIFTIYDLLTYFPFRYEDDRLK-DLREVRH 55

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           +  VT+TG +    S     ++  ++ +    G+  +         LK        ITVT
Sbjct: 56  DERVTVTGRVHSEPSLIYYSKKRSRLSMKVFAGDFLITVVCFNQPYLKKKIHVHDVITVT 115

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-L 185
           GK   +  + I           Q   F     VY++   ++V   +K I  A       +
Sbjct: 116 GKWD-MHRQTITAQSVKTGTADQTSGFG---PVYAVKGKMTVKTLRKYIQSAFHAYGSEI 171

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E +  ++L K       +A   +H P+  ++ +    AR  + Y+E LA Q+ +  +RK
Sbjct: 172 EEALPAEMLAKYKLMPKKQAMYAMHFPKSEQEVKM---ARRTIVYEEFLAFQLKMQALRK 228

Query: 246 QFKKE--IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            F++E   G  I  + +  +  + ++PFS T +Q+  + +I  D+    RM R+LQGDVG
Sbjct: 229 -FEREHSNGRAIRYDVRKLRHFIGSLPFSLTAAQKRVVNEICADLKSPFRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA IA+ AAV AG Q  +M P  ILA+QH E + +  +   + V ++T  +    
Sbjct: 288 SGKTVVAAIALYAAVTAGFQGALMVPTEILAEQHAESLCQLLEPHGVQVALLTSTVKGKR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           R+  LE++  G   I+IGTHAL Q+ + + +L LVI DEQHRFGV+QR  L +K   P V
Sbjct: 348 RKALLEQLGTGGIDILIGTHALIQEDVAFSRLGLVITDEQHRFGVEQRRILREKGMNPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T  G++D+S I + PAGRK I+T  +  N  + V+  ++  L +G+
Sbjct: 408 LFMTATPIPRTLAITVFGEMDVSVIDQMPAGRKKIETYWVKNNLFERVLGFIEKELKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE  + + ++ ++ +  L+++F    +  ++HGR+   +KE+VM +F    
Sbjct: 468 QAYVICPLIEESDKLDVQNAIDVYAILNQYFNGRYTAGLMHGRLPGDEKEAVMKAFSRNE 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A+I++I +AE FGLAQLHQLRGRVGRG+  S CILL  P  +
Sbjct: 528 IQVLVSTTVVEVGVNVPNATIMVIYDAERFGLAQLHQLRGRVGRGDAQSYCILLADPK-T 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T++GF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 EIGKERMKIMTETDNGFVLSEKDLELRGPGDFFGKKQSGLPEFKVADM-VHDFRALETAR 645

Query: 661 KDAKHILT-----QDPDLTSVRGQ 679
           +DA+ +++      DP  + +R Q
Sbjct: 646 QDAQQLISSDTFWHDPAFSHLRRQ 669


>gi|304404155|ref|ZP_07385817.1| ATP-dependent DNA helicase RecG [Paenibacillus curdlanolyticus YK9]
 gi|304347133|gb|EFM12965.1| ATP-dependent DNA helicase RecG [Paenibacillus curdlanolyticus YK9]
          Length = 682

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/638 (36%), Positives = 365/638 (57%), Gaps = 19/638 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF----QLQKRRPYKILLNDGT 98
           DLL Y P  + D   R  ++E+ +   VT+ G+I    +     + + R   K+ ++   
Sbjct: 32  DLLDYFPFRYEDYRLR-DLTEVKDGEKVTVQGHIRSLPAVARFGRGKARMSCKVEIDHFL 90

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             +T ++F R    L++    GR+IT+TGK    ++++ +      F +        ++ 
Sbjct: 91  --VTAVWFNRA--FLQDQLVLGREITLTGKWDANRHQLTVSESE--FPDRGKSRSGSLQP 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VYS+   L+    +K I +AL +   ++ + +   L+ K       EA   IH+P  A +
Sbjct: 145 VYSVGGSLTQPFMRKAIGQALIQFGDLIEDSLPPQLISKHRLIPRQEAVMRIHHPEGAAE 204

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +    AR RL Y+EL   Q+ L   R   + +  G+   ++  + +     +PF  T S
Sbjct: 205 GQG---ARRRLVYEELFWFQLKLQAYRSLLRTRSDGMAFPIDSAVIRDFAARLPFELTDS 261

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+  + +I QDM QK+ M R+LQGDVGSGKT+VA IA+ AA +AG Q  +M P  ILA+Q
Sbjct: 262 QKKVVNEITQDMRQKHGMNRLLQGDVGSGKTVVAAIALYAAAKAGHQGALMVPTEILAEQ 321

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H   +++    T + V ++TG++    RR  L  +  G   I IGTHAL QD + +  L 
Sbjct: 322 HLRSLQRLFDGTGVEVGLLTGSVTARKRRDILAGLQMGMIDIAIGTHALIQDDVIFRSLG 381

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LV+ DEQHRFGV QR  L +K  +P VL MTATPIPRTL +T+ GD+D+S + E+P GRK
Sbjct: 382 LVVTDEQHRFGVNQRSVLRRKGLSPDVLTMTATPIPRTLAITAFGDMDVSTLRERPKGRK 441

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PIKT     + +D V E ++    +G++AY ICP IEE ++ + ++ ++   ++      
Sbjct: 442 PIKTHWTKPSAMDRVFEFIQREADQGRQAYVICPLIEESEKLDVQNAIDMHATIAMSLPK 501

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HGRM+  +K+  M +F     ++L+ATTV+EVG+DV +A++I+I +AE FGL+Q
Sbjct: 502 LKVGLLHGRMTTAEKDEAMRAFGANETQVLVATTVVEVGVDVPNATLIVIIDAERFGLSQ 561

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRGE  S CIL+  P  S+    R+ V+  T+DGF +A +DL+ R  G+  G
Sbjct: 562 LHQLRGRVGRGEHQSHCILVADPK-SETGRERMKVMTETDDGFEVARKDLELRGPGDFFG 620

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            KQSG+P+F +A        LE AR+DA   LT +PD 
Sbjct: 621 TKQSGVPEFKLADMVADFETLEEAREDAAE-LTSEPDF 657


>gi|254526118|ref|ZP_05138170.1| Type III restriction enzyme, res subunit family [Prochlorococcus
           marinus str. MIT 9202]
 gi|221537542|gb|EEE39995.1| Type III restriction enzyme, res subunit family [Prochlorococcus
           marinus str. MIT 9202]
          Length = 618

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 221/568 (38%), Positives = 334/568 (58%), Gaps = 14/568 (2%)

Query: 114 KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDL 170
           K+++  G K+ ++GK+K  +     V P        + NF     I  +YSL   LS   
Sbjct: 33  KSLYTPGTKLAISGKVKLTEYGKTFVDPQIEILKGINDNFNYSGKILPLYSLGEALSNMS 92

Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
           F K++ + L      PE + K  L   S  S  E+   IH P      +    +++RL +
Sbjct: 93  FIKLMKKVLIYAKQYPEILNKKQLDSLSLLSKGESLINIHFPLTQ---QALLESKKRLVF 149

Query: 231 DELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
           DEL   QI  LL  RK  K  I   +  +  + ++ L   PF  TKSQE+ + +I +D+S
Sbjct: 150 DELFLLQIKFLLRKRKTNKNVISQQLPQKKSLLKEFLNTFPFELTKSQENVLNEIKKDLS 209

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
               M R+LQGDVGSGKT++A+ ++   +E   Q   M P  +LA+QHY+ + KY     
Sbjct: 210 NPVPMSRLLQGDVGSGKTIIAIASLLLVIEKNLQGAFMVPTEVLAEQHYKNLLKYLDPLL 269

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + VE++TGN PQ  R++    + +G   I++GTHALF+D + +  L +V++DEQHRFGV 
Sbjct: 270 VSVELLTGNTPQKKRKEIFSNLKNGLVDILVGTHALFEDKVIFNGLGMVVIDEQHRFGVS 329

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR +L  K    ++L MTATPIPRTL L+  GD+D+S+ITE P GR PI T II  + + 
Sbjct: 330 QRNRLLNKGENTNLLSMTATPIPRTLALSIYGDLDVSQITELPPGRVPITTKIISEDDLS 389

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH--FTSSIAIIHGRMSD 527
            + + +   +++G++AY I P IE+ ++ N  S  + F  L E   F   + ++HG+++ 
Sbjct: 390 NLFKIVDDEITKGRQAYVILPLIEDSEKMNLSSAKKIFKYLSEEVFFNKKVGLLHGKLNS 449

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K  V++SF +    +L++TTVIEVGIDV +A+I+II N++ FGL+QLHQLRGRVGRG 
Sbjct: 450 QEKNEVINSFIDNEINILVSTTVIEVGIDVPNATIMIIYNSDRFGLSQLHQLRGRVGRGS 509

Query: 588 EISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
             S C L+      KN     RL VL+ + DGF IAE+DL+ R  G+ILG +QSG+P F+
Sbjct: 510 TKSFCYLVTS---DKNGLENKRLCVLQKSNDGFYIAEKDLELRGPGQILGYRQSGLPDFV 566

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDL 673
           +     +  L++ AR++A  I++ DPDL
Sbjct: 567 LDNLPDNKFLIDKAREEAIKIVSDDPDL 594


>gi|221632119|ref|YP_002521340.1| ATP-dependent DNA helicase RecG [Thermomicrobium roseum DSM 5159]
 gi|221156495|gb|ACM05622.1| ATP-dependent DNA helicase RecG [Thermomicrobium roseum DSM 5159]
          Length = 807

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 241/684 (35%), Positives = 370/684 (54%), Gaps = 40/684 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID-----------RHYRPK 60
           P++   GVG + +  L  +        T   DLLF  P  ++D           R  RP 
Sbjct: 122 PVTVLPGVGSQRARQLEAL------GVTTVRDLLFLVPRRYLDYTQVVPIGRLGRLVRP- 174

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFE 119
                EE   ++ G + Q  + +    R Y  + L D TG I +++F      +      
Sbjct: 175 ----GEEVTCSVIGEVVQIETRETSGGRRYVSVQLRDETGTIPVIWF---NPYIARQLEA 227

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G++I V+G+++     +   +P +    ++ +    I  VY L  GL     +++   AL
Sbjct: 228 GQRIAVSGRLEGHGPYVRFRNPEWEPAEAELLQAGRIVPVYPLTQGLYQRQVRQLTRAAL 287

Query: 180 S-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              LP L + +   L ++   PS+A A   +H P      E       RLA+DE L  Q+
Sbjct: 288 DLALPRLEDPLPPALRERNRLPSLAWALEQLHYPETLAAAERAR---RRLAFDEFLVLQL 344

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
            L+  R  +  + GI I ++    +  L ++PF  T +Q  A+++IL D+++ + M R+L
Sbjct: 345 GLVQRRLAWHAQAGIAIPIDRAFLETFLASLPFQLTGAQRRALEEILADLAEPHPMSRLL 404

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN----TQIIVEI 354
           QGDVGSGKT+VA  A      AG QA I+AP  ILA+QH+  + +         + +V +
Sbjct: 405 QGDVGSGKTVVAAAAALLVHRAGYQAAILAPTEILAEQHFRTLTRLYHGLPGGERPLVAL 464

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+ P+  R   L  +A G   II+GTHAL ++ +Q+ +L L ++DEQHRFGV QR  L
Sbjct: 465 LTGSTPERDRGSILAGLASGTISIIVGTHALLEERVQFRRLALAVIDEQHRFGVLQRHTL 524

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K   PHVL+MTATPIPR+L L   GD+D+S I E P GR+P+KT ++P  +  +  E 
Sbjct: 525 RSKGENPHVLVMTATPIPRSLALVLHGDLDLSIIDELPPGRQPVKTYVVPGRKRTQAYEF 584

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKES 532
           ++  + +G +A+ ICP +EE +    R+    +  L         + ++HGRMS  +KE 
Sbjct: 585 VRREIEKGHQAFIICPLVEESEAIEARAATAEYERLQREVFPDLRLGLLHGRMSPREKED 644

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM  F++G   +L++T V+EVGID+ +A++I+IE AE FGLAQLHQ RGRVGRG   S C
Sbjct: 645 VMTRFRDGELHILVSTAVVEVGIDIPNATVILIEGAERFGLAQLHQFRGRVGRGSAPSYC 704

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +L+     ++ +  RL  + +T DGF +AE DL+ R  GE LG +QSG+P    A   L 
Sbjct: 705 LLVSDAS-TETARQRLEAVASTTDGFRLAEIDLELRGPGEFLGTRQSGLPNLRFAS--LA 761

Query: 653 D-SLLEIARKDAKHILTQDPDLTS 675
           D S L+ AR+ A+ +L QDP L +
Sbjct: 762 DLSTLQAARRTAEDLLRQDPLLAA 785


>gi|189500980|ref|YP_001960450.1| ATP-dependent DNA helicase RecG [Chlorobium phaeobacteroides BS1]
 gi|189496421|gb|ACE04969.1| ATP-dependent DNA helicase RecG [Chlorobium phaeobacteroides BS1]
          Length = 719

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/693 (34%), Positives = 371/693 (53%), Gaps = 45/693 (6%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  RGVG + +  L      G +      DL  + P  ++DR     +S + E    T
Sbjct: 19  PVTCIRGVGPRKAALL------GQSGIETIADLYDFFPRRYLDRRIIKPVSGLVEGEPAT 72

Query: 72  ITGYISQHSSFQLQKRRPYKILLN----DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           + G +++      Q  RP    LN    D +GE+ L++F R    +     +G  + V G
Sbjct: 73  VVGTVTK---VYRQHARPGHSRLNVTLLDKSGELELVWF-RSVSHVSAAVRQGDTLAVHG 128

Query: 128 KIKKLKNRIIMVHPHY---------IFHNSQDVN-----------FPLIEAVYSLPTGLS 167
           K+     +  M HP Y            +  DV+           +P  EA      G+ 
Sbjct: 129 KVVFFGRQRQMQHPEYERLNPDAHGSTEDGDDVSALLYTGKIVPVYPSSEARKG--AGMG 186

Query: 168 VDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226
               + ++ +A +   P   E + + ++ +     I +A+ +IH P   +  E    A  
Sbjct: 187 PKGMRGLLEKAFTLNPPCFRENLSEKIISQYGLLPINQAYRMIHFPSSPEMLER---ALY 243

Query: 227 RLAYDELLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           R  + EL   Q+   + R   K++   +     G   +++  ++PF  T++Q+ A+++I 
Sbjct: 244 RFKWTELFYAQLFFAIRRTALKEQNRAVRFERSGLFTKRLYASLPFVMTEAQKKAVREIY 303

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
           +D+    RM R+LQGDVGSGKTLVA+ AMA A + G QA  MAP  ILA QHY  +KK  
Sbjct: 304 RDLRSGIRMNRLLQGDVGSGKTLVAMFAMALAADNGLQAAFMAPTEILAFQHYMVLKKNE 363

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
               + +  ++G      RR  L+R+  G+ HI++GTHA+ ++ +++ KL L ++DEQHR
Sbjct: 364 GALGLRIGFLSGRQKAKERRDVLDRLEDGRLHILVGTHAVIEEGVRFKKLGLAVIDEQHR 423

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV QR  L  KA +PH+LLMTATPIPRTL +   GD+D++ I + P GRK + T +   
Sbjct: 424 FGVLQRKALQDKAGSPHILLMTATPIPRTLAMGVYGDLDVTVIDQLPFGRKRVVTRMRSE 483

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHG 523
            + +EV+  L+  + +G++AY + P +EE K+ + ++  E F  L +       I ++HG
Sbjct: 484 RQKNEVLAVLRQEIEKGRQAYIVYPLVEESKKIDLKAATESFLQLRDELLPGLRIGLLHG 543

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M   +KESVM+ F++GT  LL+ TTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRV
Sbjct: 544 QMRSEEKESVMERFRSGTLDLLVGTTVIEVGVDVPNASVMVIEHAERFGLAQLHQLRGRV 603

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MP 642
           GRG E S C LL H  +  ++  RL+ ++   DGF ++E D   R  G +LG +QSG M 
Sbjct: 604 GRGAEQSYCFLL-HAAVGGDARERLAAMERNHDGFRLSEIDASLRGTGNVLGKEQSGTMT 662

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
              +A       ++  AR+ A   + QD  L+ 
Sbjct: 663 GMKVADIVRDYDIMCSAREAAIETVEQDSALSD 695


>gi|160935086|ref|ZP_02082472.1| hypothetical protein CLOLEP_03962 [Clostridium leptum DSM 753]
 gi|156866539|gb|EDO59911.1| hypothetical protein CLOLEP_03962 [Clostridium leptum DSM 753]
          Length = 682

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 240/669 (35%), Positives = 362/669 (54%), Gaps = 26/669 (3%)

Query: 13  LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           L + +GVG K +    K+ ++   A       LL Y+P ++ D  +  +I     +  V 
Sbjct: 9   LQSLKGVGAKRAQLFEKLGVDSVGA-------LLRYYPRAYEDWSHPFEIDAAPFDCPVC 61

Query: 72  I-TGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I    IS+ +  +++K    Y+   +DG+  + L FF  +   + N+  +  +    GK+
Sbjct: 62  IRAAVISKVTETRIRKGMTLYRCQASDGSSVMRLTFFNNR--YIPNLIKQNGEYLFYGKV 119

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
                +  M  P +          P    VY    GLS    +  + +ALS LP  + + 
Sbjct: 120 GGTFTKREMTSPSFTTSAESSGFHP----VYGQTEGLSSRQIEAAVRQALSLLPERVNDP 175

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           + ++L        + +A   IH P+        + AR RL ++EL   Q+ L  ++ + +
Sbjct: 176 LPEELRASYQLEELGQAIRDIHLPQSEPAL---NAARRRLIFEELFVLQLGLCQLKTRNR 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +E    +  +   +Q+    +PF PT +Q  A+ + + DM +K  M R++QGDVGSGKT 
Sbjct: 233 RETSCFLTAD--RSQEFFSCLPFPPTGAQRRAVAECVADMRRKTPMNRLIQGDVGSGKTA 290

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA      A   G Q+  MAP  ILA+QHY  ++K  + T + V ++TG+  Q  RR+ L
Sbjct: 291 VAAALCYCAAREGIQSAFMAPTEILAEQHYHTMEKLFEGTGVSVALLTGSTKQRERRELL 350

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             +  GQ H++IGTHAL  D +++ +L LVI DEQHRFGV QR  L  K   PH+L+M+A
Sbjct: 351 FALKAGQIHLLIGTHALLSDPVEFQRLGLVITDEQHRFGVAQRAALAGKGENPHLLVMSA 410

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL L   GD+D+S + E P GR+ I T  I   +       L+  L++G + Y +
Sbjct: 411 TPIPRTLALMIYGDLDVSVLDELPPGRQKIDTFWIDSKKRGRAYGFLQKHLNQGLQGYIV 470

Query: 489 CPQIE-EKKESNFRSVVERFNSL--HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           CP +E E  E++  S VE   SL   E     + ++HGRM   +KE+VM +F  G   LL
Sbjct: 471 CPLVENESGEASLASAVEYAESLKAREFRDYRVGLLHGRMKPAEKEAVMRAFSRGELDLL 530

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVG+DV +A I++IENAE FGL+QLHQLRGRVGRG+E S CIL+      +  Y
Sbjct: 531 VSTTVIEVGVDVPNAVIMLIENAERFGLSQLHQLRGRVGRGKEKSYCILVSDAQNEEAVY 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL  +  T DGF IA+EDLK R  G+  G +Q G+P+  IA       +L  A++ AK 
Sbjct: 591 -RLKAMCRTNDGFQIADEDLKLRGPGDFFGARQHGLPELKIADMLGDMDILSQAQQAAKI 649

Query: 666 ILTQDPDLT 674
           +L +DP L+
Sbjct: 650 LLKKDPALS 658


>gi|206901942|ref|YP_002250862.1| ATP-dependent DNA helicase RecG [Dictyoglomus thermophilum H-6-12]
 gi|206741045|gb|ACI20103.1| ATP-dependent DNA helicase RecG [Dictyoglomus thermophilum H-6-12]
          Length = 778

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 241/668 (36%), Positives = 374/668 (55%), Gaps = 29/668 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+   +GVG   +  L+K+            DL+ Y+P  + DR    KISE+     VT
Sbjct: 96  PVQFLKGVGPHRAKLLNKL------EIYTIYDLITYYPRDYDDRSKLKKISELKPGEKVT 149

Query: 72  I-TGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I    I    +  L K+ P  K  L DGTG +  +++ +K   +K    +G  + ++G++
Sbjct: 150 IKVKIIDYEETKTLYKKIPIIKAKLTDGTGIVYGVWYGQK--YIKQALPQGTDVLISGEV 207

Query: 130 KKLKNRIIMVHPHYIFHNSQD---VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           K++   I   +P Y   + +D   +N   I  +YSL +GL+  + +KII +AL+   +  
Sbjct: 208 KRVLKHIEFENPEYEVLDEEDKEFLNVGRIVPIYSLTSGLTQKVLRKIIYDALTDYSIFL 267

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD------FEWTSPARERLAYDELLAGQIAL 240
           E    D L K     + E +N++  P    +      F   + A +R+A++EL   Q+ L
Sbjct: 268 E----DPLPK----YLREKYNLMDKPVSIWEKHFPTSFLTMASASKRIAFEELFFLQLNL 319

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
              RK+ +K        + ++ ++ L ++PF  TK+QE   ++I +D+S    M R+LQG
Sbjct: 320 AEKRKEIEKLSAPVFKTDSELVERFLNSLPFKLTKAQEKVWEEIKKDLSSGRPMHRLLQG 379

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT++A +A   A + G Q   M P  ILA+QHY  +KK  +   I + ++T + P
Sbjct: 380 DVGSGKTVIAALAAILAYDNGYQTAFMVPTEILAEQHYNRLKKIFEPLGIRIALLTSSTP 439

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           +  +      +A G+  I+IGTHAL Q+ + + KL LVI+DEQHRFGV QR KL +K   
Sbjct: 440 KKEKTYIYLDLAEGKLPIVIGTHALIQEEVTFKKLGLVIIDEQHRFGVIQRAKLWKKGEN 499

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH+L+MTATPIPR+L L   G++DIS I E P GRKP+ T +       +V   ++  + 
Sbjct: 500 PHLLVMTATPIPRSLALVLYGELDISIIDELPPGRKPVITYLFSKRERKKVYSFVEKEIM 559

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           +GK+A+ +CP IEE ++    S  + +  L + F    I +IHG +   ++  +M+ F+N
Sbjct: 560 KGKQAFVVCPLIEESEKLEAESAKKLYEELKKFFPQFKIGLIHGLVPSEERNRIMEEFQN 619

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L+ATTVIEVG+D+ +ASI++IE+A  FGLAQLHQLRGRVGRG E + C L+    
Sbjct: 620 GEIQILVATTVIEVGVDIPNASIMVIEDAHRFGLAQLHQLRGRVGRGSEQAYCFLIADLK 679

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             +++  RL V+  T DGF+IA +DL+ R  GE  G +Q G    LI        L EIA
Sbjct: 680 -GEDATERLKVMVETNDGFVIANKDLEIRGPGEFFGTRQHGALNSLIVDLTKDMKLFEIA 738

Query: 660 RKDAKHIL 667
           R +A  ++
Sbjct: 739 RNEAFELM 746


>gi|315221232|ref|ZP_07863155.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus F0211]
 gi|315189591|gb|EFU23283.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus F0211]
          Length = 690

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 241/669 (36%), Positives = 377/669 (56%), Gaps = 26/669 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D   +  + E+ +  
Sbjct: 22  LHQPLTVLPGVGPKSAEKFTKL------GIESLQDLLLYFPFRYEDFKSK-NVLELEDGE 74

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              I+G ++  ++ Q    +  ++      GE+ L   +     L +    G  I + GK
Sbjct: 75  KAVISGVVTTPANVQYYGYKRNRLRFTIKQGEVVLAVNFFNQPYLADKVEVGSTIAIFGK 134

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL--SRLPVLP 186
             K K  +  +    I    +D     ++ VY +  G+S     K+I  A   S   +L 
Sbjct: 135 WDKAKASLTGMK---ILAQVEDD----LQPVYRVAQGISQASLVKVIKTAFDQSLELLLE 187

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++      ++A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 188 ENLPQILLERYQLVERSQAVRAMHFP---KDLTEYKQALRRVKFEELFYFQMQLQVLKCE 244

Query: 247 FKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K    G+ I  +  + +     +PF  T +QE ++ +ILQDM     M R+LQGDVGSG
Sbjct: 245 TKDVSQGLIIPWQADLLENKKATLPFELTVAQERSLNEILQDMKSPAHMNRLLQGDVGSG 304

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     +II  ++TG M  A RR
Sbjct: 305 KTVVAGLAMYATYTAGLQSTLMVPTEILAEQHFDSLSQLFPELRII--LLTGGMKPAERR 362

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           +ALE I  GQ  +I+GTHAL Q+S+ Y++L LVI+DEQHRFGV QR  L +K   P VL+
Sbjct: 363 QALEAIEVGQVDMIVGTHALIQESVIYHQLGLVIIDEQHRFGVGQRRILREKGNNPDVLM 422

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ L   L  G + 
Sbjct: 423 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLLKELQRGAQI 482

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  +F   + +A++HG+M   +K+++M  FK G   
Sbjct: 483 YVISPLIEESEALDLKNAIALEKELKAYFGDKAHVALLHGKMKSDEKDAIMQDFKEGKTD 542

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 543 ILVSTTVIEVGVNVPNATVMLIMDADRFGLSQLHQLRGRVGRGNKQSYAVLVANPK-TES 601

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 602 GKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADILEDYPILEEARKVA 661

Query: 664 KHILTQDPD 672
             I++  PD
Sbjct: 662 SQIVST-PD 669


>gi|313889712|ref|ZP_07823355.1| ATP-dependent DNA helicase RecG [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313122009|gb|EFR45105.1| ATP-dependent DNA helicase RecG [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 671

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/679 (34%), Positives = 382/679 (56%), Gaps = 27/679 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEE 67
           L +PLS  +G G K +    K+      N     +LL Y+P  + D  ++ K + ++ + 
Sbjct: 3   LHSPLSELKGFGPKSAEKFQKL------NIFTIEELLLYYPFRYED--FKSKSVFDLQDG 54

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
               +TG +   ++ Q    +  ++      G++ +   +     L +    G+++ V G
Sbjct: 55  EKAVLTGTVVTPATVQYYGFKRNRLSFKIKQGDLVIAINFFNQPYLADKVELGKEVAVFG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVL 185
           K  + K  +  +   ++     D     ++ VY +  G+S     K I  A     L  +
Sbjct: 115 KWDQKKTSVTGMK--FLMSLEDD-----LQPVYHVVQGVSQAALIKAIKSAFDTNLLSEI 167

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E I + L+QK       EA   +H P    ++     A  R+ ++EL   Q+ L +++ 
Sbjct: 168 EENIPELLIQKYRLMGRQEAIRAMHFPADLPEYR---QALRRIKFEELFYFQMQLQVLKH 224

Query: 246 QFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
             K E  G+ I  + K  ++++  +PFS T +Q +++++IL+DM+    M R+LQGDVGS
Sbjct: 225 ANKSETAGLAIAYDKKALEQVIAGLPFSLTGAQLNSLEEILKDMASGQHMNRLLQGDVGS 284

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++A +AM A   AG Q+ +M P  ILA+QHY+ +       ++ + I+   M  A +
Sbjct: 285 GKTVIASLAMYATYTAGYQSALMVPTEILAEQHYQSLTNLF--PELSIAILKSGMKVAAK 342

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R AL  IA G   +I+GTHAL QD++QY+KL LVI DEQHRFGV+QR    +K   P VL
Sbjct: 343 RSALAAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDVL 402

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL +T+ G++D+S I + PAGRKPI T  +   ++ +V+  ++  +++G +
Sbjct: 403 MMTATPIPRTLAITAYGEMDVSIIDQLPAGRKPIVTRWVKHQQLHDVLTWMRQEIAKGAQ 462

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            Y I P IEE +  + ++ V     L  +F   + IA++HG+M + DK+++M +FKN   
Sbjct: 463 VYVISPLIEESEALDLKNAVALEQELKNYFQGDARIALMHGKMKNEDKDAIMQAFKNQEI 522

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  ++
Sbjct: 523 DLLVSTTVIEVGVNVPNATIMLIMDADRFGLSQLHQLRGRVGRGHKQSYALLVANPK-TE 581

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++  T DGF++AE DLK R  GEI G +QSG+P+F  A       +LE AR+ 
Sbjct: 582 TGKERMRIMTETSDGFVLAEADLKMRGSGEIFGTRQSGIPEFKTADLLEDYPILEEARRV 641

Query: 663 AKHILTQDPDLTSVRGQSI 681
           A  I +Q    T  R   I
Sbjct: 642 ASEIASQANWQTDQRWHKI 660


>gi|228992583|ref|ZP_04152510.1| ATP-dependent DNA helicase recG [Bacillus pseudomycoides DSM 12442]
 gi|228767217|gb|EEM15853.1| ATP-dependent DNA helicase recG [Bacillus pseudomycoides DSM 12442]
          Length = 685

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 232/681 (34%), Positives = 387/681 (56%), Gaps = 25/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G++ S  L ++     ++      LL + P  + D +    ++E+  E  VT
Sbjct: 11  PVTDVKGIGEETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHEERVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K    E   +T+TGK 
Sbjct: 64  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TVTITGKW 121

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 122 DQHRQTISISELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGSSIEEM 177

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   LL +       EA   +H P   +D +    AR R  Y+E    Q+ +  +RK  +
Sbjct: 178 LPDGLLGRYKLLPRYEALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQALRKMER 234

Query: 249 KEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G   ++  K  ++    +PF  T +Q   + +I++DM    RM R+LQGDVGSGKT
Sbjct: 235 ESSKGTKKDISMKELEEFTDALPFPLTGAQRRVVSEIIKDMQSPYRMNRLLQGDVGSGKT 294

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IA+ AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR+ 
Sbjct: 295 VVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFNMNVELLTSSVKGARRREV 354

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 355 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 414

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + ++ V+  ++  +++G++AY 
Sbjct: 415 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLERVLGFVEKEVNKGRQAYV 474

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE VM+ F     ++L
Sbjct: 475 ICPLIEESEKLDVQNAIDLHSMLMHHYQGKFQVGLMHGRLSSQEKEDVMEKFSENKVQIL 534

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 535 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 593

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR+DA 
Sbjct: 594 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETARQDAA 652

Query: 665 HILTQDPDLTSVRGQSIRILL 685
            ++  +    + +  ++R+ L
Sbjct: 653 VLVDSEAFWHNEQYAALRVYL 673


>gi|219854623|ref|YP_002471745.1| hypothetical protein CKR_1280 [Clostridium kluyveri NBRC 12016]
 gi|219568347|dbj|BAH06331.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 682

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/563 (38%), Positives = 335/563 (59%), Gaps = 19/563 (3%)

Query: 113 LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFK 172
           +KN F   +   + GKI++    I +++P  + +         I  +Y L +G++ ++  
Sbjct: 103 MKNKFKINKVYRIMGKIERFNGSISIMNPTLVSNEVNSKKEDKIIPIYPLKSGITNNILI 162

Query: 173 KIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
           K+I + +  + +   LP WI    ++K  F S+ +A   IH P   ++ E    A+ RL 
Sbjct: 163 KLISKVIHEVDIEENLPTWI----IKKYKFCSLNKAIKAIHKPGSIEELE---EAKRRLK 215

Query: 230 YDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
           + EL +  + +L+++    + + GI   +  ++ + + + IP+  TKSQ   I++IL D 
Sbjct: 216 FQELFSYSLKILMLKNYHSRNKKGIAFKIASELKE-LKKRIPYELTKSQNKVIREILLDE 274

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
             ++ M R+LQGDVGSGKT+VA+IA+   V+ G QAV MAP  ILA+QHYE  KK+ Q+T
Sbjct: 275 KMESPMNRLLQGDVGSGKTIVAIIAIFNVVKNGYQAVFMAPTEILAKQHYEECKKFLQDT 334

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            + ++++ G++ + +++   E + +G+  IIIGTHAL +D +++  + +V+ DEQHRFGV
Sbjct: 335 GVNIQLLCGSVTERNKKILKEDLKYGKIDIIIGTHALIEDDVEFKNIGMVVTDEQHRFGV 394

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            QR KL  K      L+MTATPIPRTL L   GD++IS I E P GRK I T        
Sbjct: 395 AQRSKLINKGKYVDTLVMTATPIPRTLSLCLHGDLNISIIDELPPGRKKIHTYYTDKKSK 454

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMS 526
           D V +     + +G++ Y +CP +E+    +  SV E ++ L E +     I +++G+MS
Sbjct: 455 DRVYKFAVEEIKKGRQVYVVCPLVEQNDNLHLSSVKEIYDKLKEKYFKDLEIGVLYGKMS 514

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              KE  M+ FKNG  K +I+TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG
Sbjct: 515 SSSKEETMNKFKNGEIKAIISTTVIEVGVNVPNAAVMIIENAERFGLAQLHQLRGRVGRG 574

Query: 587 EEISSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           E  S CIL+      KN +   R+ ++K++ DGF IAEEDLK R  GEI G KQ G  + 
Sbjct: 575 EYKSYCILIADI---KNDFVRRRMEIMKSSNDGFFIAEEDLKIRGSGEIFGFKQHGENEL 631

Query: 645 LIAQPELHDSLLEIARKDAKHIL 667
           + +       + ++A  +AK  L
Sbjct: 632 IFSNLSEDIHIFKLANLEAKRFL 654


>gi|225869162|ref|YP_002745110.1| ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702438|emb|CAX00322.1| ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 671

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 232/634 (36%), Positives = 368/634 (58%), Gaps = 25/634 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL Y+P  + D   +  +  +  E+ V +TG +    S Q    +  ++      GE+ 
Sbjct: 31  DLLLYYPFRYEDFKSKSALELLDGEKAV-LTGRVVTPPSVQYYGFKRNRLSFKLKQGELV 89

Query: 103 L-LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
           + + F+ +  +L+ +  + +++ + G+  + K  +  +       +        ++ VY 
Sbjct: 90  ISVSFFNQPYLLEKIVLD-QEVAIFGRWDQKKAALTGMKLLMTLEDD-------LQPVYH 141

Query: 162 LPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           +  G+S     K I  A     L  L E + + L+QK        A   +H P+  +D++
Sbjct: 142 VAQGISQPTLIKAIRSAFDSGALAQLEENLPEPLIQKYRLLPRQAAVYAMHFPKHMEDYK 201

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKE---IGIPINVEGKIAQKILRNIPFSPTKS 276
               A  R+ ++E    Q+ L +++   K E   + IP + +  +A+KI   +PFS T++
Sbjct: 202 ---QALRRIKFEEFFYFQMNLQVLKLANKAEGNGLAIPFHQQA-VAKKI-AALPFSLTRA 256

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+ ++++IL DM+    M R+LQGDVGSGKT++A +AM AA  AG Q+ +M P  ILA+Q
Sbjct: 257 QQRSLEEILADMASAAHMNRLLQGDVGSGKTVIASLAMYAAQTAGFQSALMVPTEILAEQ 316

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY+ + +   +  I   ++T  M  A +R AL  IA G   +I+GTHAL QD++ Y+KL 
Sbjct: 317 HYDSLCQLFPDLSI--ALLTSGMKVAEKRTALSAIADGSVDMIVGTHALIQDTVTYHKLG 374

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV QR    +K   P VL+MTATPIPRTL +T+ G++D+S I E PAGRK
Sbjct: 375 LVITDEQHRFGVNQRRLFREKGNNPDVLMMTATPIPRTLAITAYGEMDVSIIDELPAGRK 434

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514
           PI T  +   ++D V+  +K  L++G +AY I P IEE +  + ++ V     L ++F  
Sbjct: 435 PIITRWVKHQQLDSVLAWVKTELAKGAQAYVISPLIEESETLDLKNAVALEAELKDYFKA 494

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           ++S+A++HG+M   DKE +M  FK     +L++TTVIEVG++V +A+I++I NA+ FGL+
Sbjct: 495 SASVALMHGKMKADDKEMIMQRFKAKEIDVLVSTTVIEVGVNVPNATIMLIMNADRFGLS 554

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG + S  IL+  P  + +   R++++  T DGF++AE DLK R  GEI 
Sbjct: 555 QLHQLRGRVGRGSKQSYAILVADPK-TDSGKERMTIMTTTNDGFVLAEADLKLRGSGEIF 613

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           G +QSG+P+F  A       +LE AR+ A  I+ 
Sbjct: 614 GTRQSGLPEFKTADIVEDYHILEEARRVAAEIVA 647


>gi|153954009|ref|YP_001394774.1| ATP-dependent DNA helicase RecG [Clostridium kluyveri DSM 555]
 gi|146346890|gb|EDK33426.1| Hypothetical protein CKL_1384 [Clostridium kluyveri DSM 555]
          Length = 679

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/563 (38%), Positives = 335/563 (59%), Gaps = 19/563 (3%)

Query: 113 LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFK 172
           +KN F   +   + GKI++    I +++P  + +         I  +Y L +G++ ++  
Sbjct: 100 MKNKFKINKVYRIMGKIERFNGSISIMNPTLVSNEVNSKKEDKIIPIYPLKSGITNNILI 159

Query: 173 KIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
           K+I + +  + +   LP WI    ++K  F S+ +A   IH P   ++ E    A+ RL 
Sbjct: 160 KLISKVIHEVDIEENLPTWI----IKKYKFCSLNKAIKAIHKPGSIEELE---EAKRRLK 212

Query: 230 YDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
           + EL +  + +L+++    + + GI   +  ++ + + + IP+  TKSQ   I++IL D 
Sbjct: 213 FQELFSYSLKILMLKNYHSRNKKGIAFKIASELKE-LKKRIPYELTKSQNKVIREILLDE 271

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
             ++ M R+LQGDVGSGKT+VA+IA+   V+ G QAV MAP  ILA+QHYE  KK+ Q+T
Sbjct: 272 KMESPMNRLLQGDVGSGKTIVAIIAIFNVVKNGYQAVFMAPTEILAKQHYEECKKFLQDT 331

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            + ++++ G++ + +++   E + +G+  IIIGTHAL +D +++  + +V+ DEQHRFGV
Sbjct: 332 GVNIQLLCGSVTERNKKILKEDLKYGKIDIIIGTHALIEDDVEFKNIGMVVTDEQHRFGV 391

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            QR KL  K      L+MTATPIPRTL L   GD++IS I E P GRK I T        
Sbjct: 392 AQRSKLINKGKYVDTLVMTATPIPRTLSLCLHGDLNISIIDELPPGRKKIHTYYTDKKSK 451

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMS 526
           D V +     + +G++ Y +CP +E+    +  SV E ++ L E +     I +++G+MS
Sbjct: 452 DRVYKFAVEEIKKGRQVYVVCPLVEQNDNLHLSSVKEIYDKLKEKYFKDLEIGVLYGKMS 511

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              KE  M+ FKNG  K +I+TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG
Sbjct: 512 SSSKEETMNKFKNGEIKAIISTTVIEVGVNVPNAAVMIIENAERFGLAQLHQLRGRVGRG 571

Query: 587 EEISSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           E  S CIL+      KN +   R+ ++K++ DGF IAEEDLK R  GEI G KQ G  + 
Sbjct: 572 EYKSYCILIADI---KNDFVRRRMEIMKSSNDGFFIAEEDLKIRGSGEIFGFKQHGENEL 628

Query: 645 LIAQPELHDSLLEIARKDAKHIL 667
           + +       + ++A  +AK  L
Sbjct: 629 IFSNLSEDIHIFKLANLEAKRFL 651


>gi|292669654|ref|ZP_06603080.1| DNA helicase RecG [Selenomonas noxia ATCC 43541]
 gi|292648451|gb|EFF66423.1| DNA helicase RecG [Selenomonas noxia ATCC 43541]
          Length = 688

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 241/655 (36%), Positives = 359/655 (54%), Gaps = 40/655 (6%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S  RGVG K S   +++            DLL Y+P ++ D+    +I+++      T+
Sbjct: 7   ISKVRGVGVKKSAAFARL------GIRTVYDLLTYYPRAYEDQSSITRIADLRAGMRATV 60

Query: 73  TGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            G I Q +  Q  +RR + +L   + DGTG +  ++F ++   LK+   EGR+I +TGK 
Sbjct: 61  LGVIHQVTDRQ-TRRRGFTVLTALIGDGTGYMQAVWFNQR--FLKSKLREGRRILLTGKT 117

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEA------------VYSLPTGLSVDLFKKIIVE 177
               N             SQ  +F L+ A            +Y+   GL     ++++  
Sbjct: 118 DYAYN------GGGQLALSQITSFELLGARDHAESLLGILPIYAATEGLPQKQLRQMMEY 171

Query: 178 ALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL++    L E +   + Q+      A+AF  IH P++ ++      AR RLA++EL   
Sbjct: 172 ALAQSADKLTETLPPRIRQEYDLIGRADAFRRIHFPKREEELR---AARRRLAFEELYLI 228

Query: 237 QIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q  LL ++K+  +E  GI     G +A ++L  +PF  T+ Q     +I +DM     M 
Sbjct: 229 QCGLLALKKRTAEEQEGIAHRPNGVLAARVLEALPFELTEDQAKVWGEIARDMESPLPMR 288

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT VAL+A+    E G Q  +MAP  ILA+QHY++++       I V  +
Sbjct: 289 RLVQGDVGSGKTAVALLALVKTTENGYQGALMAPTEILARQHYDYLQTLLTPLGIRVGFL 348

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G + +  R +    +A     II+GTHAL QD + +  L LV+ DEQHRFGV QR  L 
Sbjct: 349 SGRLTKKERAEIDAALAAHTVDIIVGTHALIQDHVAFDALGLVVTDEQHRFGVAQRTALE 408

Query: 416 QKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
           +K+   P VL+MTATPIPRT+ LT  GD+D+S+I   P GR+PI+T +       ++   
Sbjct: 409 KKSGGTPDVLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRRPIRTFLRDETARGKIYAF 468

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDKES 532
           ++  +  G++AY +CP IE  +ES+  S  E +  L       IA  ++HGRM   +KE 
Sbjct: 469 VRREIESGRQAYVVCPLIEASEESDLPSAEEVYEELSRSIFRGIACGLLHGRMKSAEKEE 528

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM+ F     KLL++TTVIEVG++V +ASI+++E+AE FGLAQLHQLRGRVGRG   S C
Sbjct: 529 VMNGFYANRIKLLVSTTVIEVGVNVPNASILVVEHAERFGLAQLHQLRGRVGRGSYDSYC 588

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           IL+     S     RL V++ T DGF +AEEDL+ R  G+  G  Q G+    IA
Sbjct: 589 ILI--AGRSAAPQERLQVIEQTSDGFRLAEEDLRLRGPGQFFGAMQHGLGDLKIA 641


>gi|332522488|ref|ZP_08398740.1| ATP-dependent DNA helicase RecG [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313752|gb|EGJ26737.1| ATP-dependent DNA helicase RecG [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 671

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 241/682 (35%), Positives = 384/682 (56%), Gaps = 33/682 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PLS  +G G K +    K+      +     +LL Y+P  + D   +        E+
Sbjct: 3   LHSPLSELKGFGPKSAEKFQKL------DIFTIEELLLYYPFRYEDFKSKSVFDLQDGEK 56

Query: 69  IV----TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            V     +T    Q+  F+ + R  +KI  +D    +  + F+ +  +   V  + +++ 
Sbjct: 57  AVLKGKVVTPATVQYYGFK-RNRLSFKIKEDD---LVIAINFFNQPYLADKVELD-KEVA 111

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--L 182
           + GK  + K  +  +   ++     D     ++ VY +  G+S     K I  A     L
Sbjct: 112 IFGKWDQKKTSLTGMK--FLMSLEDD-----LQPVYHVAQGVSQTALIKAIKSAFDTNLL 164

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E I + L+QK       EA   +H P    D      A  R+ ++EL   Q+ L +
Sbjct: 165 SEIEENIPELLVQKYRLMGRQEAIRAMHFP---ADLPEYRQALRRIKFEELFYFQMQLQV 221

Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           ++   K    G+ I  + +  ++++ ++PFS T +Q  ++++IL+DM+    M R+LQGD
Sbjct: 222 LKHANKSATSGLAIAYDQRALEQVIASLPFSLTGAQLKSLEEILKDMASGQHMNRLLQGD 281

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT++A +AM AA  AG Q+ +M P  ILA+QHY+ +       ++ + I+   M  
Sbjct: 282 VGSGKTVIASLAMYAAYTAGYQSALMVPTEILAEQHYQSLTSLF--PELSIAILKSGMKA 339

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A +R AL  IA G   +I+GTHAL QD++QY+KL LVI DEQHRFGV+QR    +K   P
Sbjct: 340 AAKRSALTAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGENP 399

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL +T+ G++D+S I + PAGRKPI T  +   ++D+V+  ++  +++
Sbjct: 400 DVLMMTATPIPRTLAITAYGEMDVSIIDQLPAGRKPIVTRWVKHQQLDDVLTWMRQEIAK 459

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
           G + Y I P IEE +  + ++ V     L  +F   + IA++HG+M + DK+++M +FKN
Sbjct: 460 GAQVYVISPLIEESEALDLKNAVALEQELKNYFQGDARIALMHGKMKNEDKDAIMQAFKN 519

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               LL++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P 
Sbjct: 520 QEIDLLVSTTVIEVGVNVPNATIMLIMDADRFGLSQLHQLRGRVGRGHKQSYALLVANPK 579

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++    R+ ++  T DGF++AE DLK R  GEI G +QSG+P+F IA       +LE A
Sbjct: 580 -TETGKERMRIMTETNDGFILAEADLKMRGSGEIFGTRQSGIPEFKIADLLEDYPILEEA 638

Query: 660 RKDAKHILTQDPDLTSVRGQSI 681
           R+ A  I +Q    T  R Q I
Sbjct: 639 RRVASEIASQPNWQTDQRWQKI 660


>gi|87124312|ref|ZP_01080161.1| putative DNA helicase [Synechococcus sp. RS9917]
 gi|86167884|gb|EAQ69142.1| putative DNA helicase [Synechococcus sp. RS9917]
          Length = 856

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/690 (34%), Positives = 373/690 (54%), Gaps = 39/690 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL   +GVG K +  L+ +      +         Y+P  ++D     +I  +    
Sbjct: 157 LDTPLGKVKGVGPKLAERLAALGLLLVRDLL------LYYPRDYVDYSALRRIEALQAGE 210

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNV--------F 117
             TI   + +   F   +     IL   L D TG + +  F                  +
Sbjct: 211 TATIVASVRRCHGFTSPRNPNLSILELQLQDPTGRLKVTRFLAGRRFSSPAALHSQTRQY 270

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-------IEAVYSLPTGLSVDL 170
             G  + V+G +K     +    P  +    +    PL       +  VY L  GL+ D 
Sbjct: 271 PAGATVAVSGLVKAGPYGLSFQDP--LIEVMESAQAPLRSRQIGRLLPVYPLTEGLTADR 328

Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
            ++ +   L    + PE +     Q+    + ++A   IH P    D +    AR RL +
Sbjct: 329 LRRTVDAVLPLGRLWPEPLTVQQRQRLGLLTRSQALQAIHQP---PDRDSLQQARRRLVF 385

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGK---IAQKILRNIPFSPTKSQESAIKDILQD 287
           DE L  Q+ L+L R   ++     +   G    +  + L  +PF  T +QE  + +I  D
Sbjct: 386 DEFLLLQLGLMLRRAALRQRQAPALRALGARDGLVGRFLDELPFRFTAAQERVLAEIELD 445

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           +++   M R++QGDVGSGKT+VA+ A+  AVEAG Q   MAP  +LA+QHY  + ++   
Sbjct: 446 LARPEPMARLVQGDVGSGKTVVAIAALLKAVEAGWQGAFMAPTEVLAEQHYRSLCRWLIP 505

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + VE++TG  P+  RR+ L  +A+GQ ++++GTHAL +D + + +L LV+VDEQHRFG
Sbjct: 506 LNVSVELLTGATPRPVRRRLLTDLANGQLNVLVGTHALIEDPVDFSRLGLVVVDEQHRFG 565

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           V+QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PIKT ++  + 
Sbjct: 566 VKQRNRLLGKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIKTRLLTASA 625

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRM 525
            DE    ++  ++ G++AY + P +E+ ++ + RS VE    L +       + ++HGR+
Sbjct: 626 RDEAYALIREEVARGQRAYVVLPLVEDSEKLDLRSAVEVHRQLCDEVFPEFEVGLLHGRL 685

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S  +K++V+ +F  G  ++L++TTV+EVG+DV +AS+++I++A+ FGLAQLHQLRGRVGR
Sbjct: 686 SSAEKQAVIHAFAEGRAQVLVSTTVVEVGVDVPEASVMVIDHADRFGLAQLHQLRGRVGR 745

Query: 586 GEEISSCILLYHPPLSKN--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           G   S C+L+     S+N  +  RL VL  + DGF IAE DL+ R  G++LG +QSG+P 
Sbjct: 746 GAAASHCLLIND---SRNVLAKQRLEVLVRSNDGFEIAEMDLRLRGPGQVLGTRQSGLPD 802

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             +A      S+LE AR++A  +++ DP L
Sbjct: 803 LALASLADDGSVLEEAREEAAALISADPSL 832


>gi|300214416|gb|ADJ78832.1| ATP-dependent DNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 678

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 238/668 (35%), Positives = 379/668 (56%), Gaps = 40/668 (5%)

Query: 13  LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           +   RGVG K    L+K+ +N          DLL ++P  + D   +  + EI+ +  VT
Sbjct: 9   VGVLRGVGPKKIQALNKLGVNT-------IEDLLTFYPFRYNDIAVK-NLEEINSQEKVT 60

Query: 72  ITGYISQHS---SFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           + G ++       F  +K R  +K+L+N     +T   F+ +  + K V   G+++ V G
Sbjct: 61  LKGIVASEPVLVRFGRKKSRLNFKLLINHDVIGVT---FFNQPWISKQVT-TGQELAVYG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL----- 182
           K   L+  +  +    I   + D        VY     +   + K+++ +A         
Sbjct: 117 KYDALRQSLSGIK--IISRKTND-----FVGVYRSSKDIKESVVKQLVKQAYEEYNSYIR 169

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            V+PE I      K    +  +  + +H P   K+      AR    +DE  + +  L L
Sbjct: 170 DVVPESIRI----KYHLENRKQMIHDMHFPSTKKE---ADSARRSAIFDEFFSFEAGLQL 222

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +++   K +G+ I    +  ++ ++ +PF  TK+Q+  + +I  DM   N M R+LQGDV
Sbjct: 223 LKRDNHKNMGLRIKYNNEKLKEFIKGLPFELTKAQKRVVNEICADMLSPNHMNRLLQGDV 282

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ- 361
           GSGKT++A IAM A V AG QAV+MAP  ILAQQH E +    +   I V ++T +    
Sbjct: 283 GSGKTIIAAIAMYATVTAGFQAVLMAPTEILAQQHAEKLANLFEQYGISVALMTSSSLSR 342

Query: 362 -AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +R+ L+ + +G   I+IGTHA+ QD+I+++ L L I DEQHRFGV QR  L +K   
Sbjct: 343 VKVKRELLKHLKNGDIDIVIGTHAVIQDNIEFHNLGLAITDEQHRFGVNQRRILRKKGVN 402

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P +L MTATPIPRTL +T+ G++D+S I E P GR+P+KT  +   ++  V E +K  L 
Sbjct: 403 PEILAMTATPIPRTLAITTYGEMDVSIIDELPKGRQPVKTSWVKKKQVKNVFEFVKRQLE 462

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKN 539
            G +AY I P +EE +  + ++  E F    E+F S  +A++HG+M   +KE  M +FKN
Sbjct: 463 LGTQAYIISPLVEESELLDLQNAEEVFEKAKEYFGSEKVALLHGKMDANEKEQAMQAFKN 522

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L++TTVIEVG+DV +A+++II +A+ FGLAQLHQLRGRVGRG + S CIL+  P 
Sbjct: 523 KEVSILVSTTVIEVGVDVPNATVMIILDADRFGLAQLHQLRGRVGRGSKESYCILVADPK 582

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            S+    R+ ++  T DGFLI+++DL+ R  GE+LG KQSG+P+F +  P ++ ++L++A
Sbjct: 583 -SEYGKERMKIMTGTNDGFLISQKDLELRGPGEVLGKKQSGLPEFKVGDPVVNLNILQVA 641

Query: 660 RKDAKHIL 667
           +++A +++
Sbjct: 642 QEEAHNVV 649


>gi|227890686|ref|ZP_04008491.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227867624|gb|EEJ75045.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 678

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 245/696 (35%), Positives = 388/696 (55%), Gaps = 58/696 (8%)

Query: 13  LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           +   RGVG K    L+K+ +N          DLL ++P  + D   +  + EI+ +  VT
Sbjct: 9   VGVLRGVGPKKIQALNKLGVNT-------IEDLLTFYPFRYNDIAVK-NLEEINSQEKVT 60

Query: 72  ITGYISQHS---SFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           + G ++       F  +K R  +K+L+N     +T   F+ +  + K V   G+++ V G
Sbjct: 61  LKGIVASEPILVRFGRKKSRLNFKLLINHDVIGVT---FFNQPWISKQVT-TGQELAVYG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL----- 182
           K   L+  +  +    I   + D        VY     +   + K+++ +A         
Sbjct: 117 KYDALRQSLSGIK--IISRKTND-----FVGVYRSSEDIKESVVKQLVKQAYEEYNSYIR 169

Query: 183 PVLPEWIE--------KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            V+PE I         K ++    FPS           +K  D      AR    +DE  
Sbjct: 170 DVVPESIRIKYHLENRKQMIHDMHFPST----------KKEADL-----ARRSAIFDEFF 214

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           + +  L L+++   K +G+ I    +  ++ ++ +PF  TK+Q+  + +I  DM   N M
Sbjct: 215 SFEAGLQLLKRDNHKNMGLRIKYNNEKLKEFIKGLPFELTKAQKRVVNEICADMLSPNHM 274

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVGSGKT++A IAM A V AG QAV+MAP  ILAQQH E +    +   I V +
Sbjct: 275 NRLLQGDVGSGKTIIAAIAMYATVTAGLQAVLMAPTEILAQQHAEKLANLFEQYGISVAL 334

Query: 355 ITGNMPQ--AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
           +T +       +R+ L+ + +G   I+IGTHA+ QD+I+++ L L I DEQHRFGV QR 
Sbjct: 335 MTSSSLSRVKVKRELLKHLKNGDIDIVIGTHAVIQDNIEFHNLGLAITDEQHRFGVNQRR 394

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L +K   P +L MTATPIPRTL +T+ G++D+S I E P GR+P+KT  +   ++  V 
Sbjct: 395 ILRKKGVNPEILAMTATPIPRTLAITTYGEMDVSIIDELPKGRQPVKTSWVKKKQVKNVF 454

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKE 531
           E +K  L  G +AY I P +EE +  + ++  E F    E+F S  +A++HG+M   +KE
Sbjct: 455 EFVKRQLELGTQAYIISPLVEESELLDLQNAEEVFEKAKEYFGSEKVALLHGKMDANEKE 514

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             M +FKN    +L++TTVIEVG+DV +A+++II +A+ FGLAQLHQLRGRVGRG + S 
Sbjct: 515 QAMQAFKNKEVSILVSTTVIEVGVDVPNATVMIILDADRFGLAQLHQLRGRVGRGSKESY 574

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           CIL+  P  S+    R+ ++  T DGFLI+++DL+ R  GE+LG KQSG+P+F +  P +
Sbjct: 575 CILVADPK-SEYGKERMKIMTETNDGFLISQKDLELRGPGEVLGKKQSGLPEFKVGDPVV 633

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           + ++L++A+++A H +   P+  + R ++  ++ YL
Sbjct: 634 NLNILQVAQEEA-HNVVFSPNFET-REENFELIKYL 667


>gi|198277587|ref|ZP_03210118.1| hypothetical protein BACPLE_03809 [Bacteroides plebeius DSM 17135]
 gi|198270085|gb|EDY94355.1| hypothetical protein BACPLE_03809 [Bacteroides plebeius DSM 17135]
          Length = 699

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 248/679 (36%), Positives = 378/679 (55%), Gaps = 44/679 (6%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +N  +       DLL+Y P  ++DR     I EI      + + G I
Sbjct: 14  GVGPQRAAILNKELNIYSLR-----DLLYYFPYKYVDRSRLYYIHEIDGNMPYIQLRGRI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
                F   ++R       DGTG + L            V+F+G K  +TGK K  +  I
Sbjct: 69  LSFEMFGEGRQRRLVGHFTDGTGVVDL------------VWFQGLKY-ITGKYKANEEYI 115

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLP-TGLSVDLFKKIIVEALSRLPVLPEWIEKDL-- 193
           +   P  +F+   +V  P I+    L  + + +  +     E + R  +    +EK +  
Sbjct: 116 VFGKPT-VFNGRINVAHPDIDPAQELTLSTMGLQPYYNT-TEKMKRTSLNSHALEKLMKN 173

Query: 194 ----LQKKSF-----PSIAEAFNI------IHNPRKAKDFEWTSPARERLAYDELLAGQI 238
               LQK+SF     PS+  A  +      ++N    ++ E    A+ RL ++EL   Q+
Sbjct: 174 LFQALQKESFEETLSPSLIAAHQLMPLTDALYNIHFPQNPELLRKAQYRLKFEELFYVQL 233

Query: 239 ALLLMRKQFKKEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            +L   K+ + +  G+     G+I       ++PF  T +Q+  IK++ +DM    +M R
Sbjct: 234 NILRYTKERRNKFRGLVFERVGEIFNTFYAHHLPFQLTGAQKRVIKEMRRDMGSGRQMNR 293

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKTLVAL+ M  A++ G QA +MAP  ILA QHYE I+++     + VE++T
Sbjct: 294 LLQGDVGSGKTLVALMTMLIALDNGFQACMMAPTEILATQHYETIRRFLNGMPVRVELLT 353

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           GN+    R   L  +  G  HI+IGTHA+ +D++ +  L LV++DEQHRFGV QR KL  
Sbjct: 354 GNVKGKRRETILRDLLTGDVHILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRAKLWA 413

Query: 417 KAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           K T  PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    NR   + E +
Sbjct: 414 KNTRPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRRKSMYEFM 473

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           +  + EG++ Y + P I+E ++ + +++ E +  + E F    ++ +HG+M   +KE  M
Sbjct: 474 RKQIQEGRQVYIVYPLIQESEKMDIKNLEEGYMHICEEFPEYKVSKVHGKMKPAEKEEEM 533

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F     ++++ATTVIEVG++V +AS++ IENAE FGL+QLHQLRGRVGRG + S CIL
Sbjct: 534 QRFLANETQIMVATTVIEVGVNVPNASVMAIENAERFGLSQLHQLRGRVGRGADQSYCIL 593

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHD 653
           +    L++ +  R+ ++  T DGF IAE DLK R  G++ G +QSG+   L IA      
Sbjct: 594 VTGYKLTEETRKRIEIMVQTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIAKDG 653

Query: 654 SLLEIARKDAKHILTQDPD 672
            LL+  R+ A+ +L  DP+
Sbjct: 654 QLLQYVREIAERLLDDDPE 672


>gi|73748952|ref|YP_308191.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. CBDB1]
 gi|73660668|emb|CAI83275.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. CBDB1]
          Length = 740

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 227/657 (34%), Positives = 367/657 (55%), Gaps = 33/657 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL+Y P+  +D     KIS++      TI   + Q     +  RR  + +L D TG + 
Sbjct: 70  DLLYYFPNRHLDYSRLKKISQLEAGPEQTIIANVWQSKVNFMGGRRSTEAVLGDDTGNMR 129

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVY 160
            ++F     M++N+    R + ++G++   + R +   P +  +   +  ++   +  VY
Sbjct: 130 AVWF-NNPYMVRNLKPNAR-VVLSGRVSIFQGRPVFESPEWEELPDEADLIHTGRLVPVY 187

Query: 161 SLPTGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
            L  GL     ++++   +    P + +++  + L++     ++EA    H P    D E
Sbjct: 188 PLTAGLHQRSLRRLMKNFIDISSPNISDFMPAETLKRTRLLPLSEAIRQAHFP---DDEE 244

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
             + AR RLA+DEL   Q+ +L  +K++ ++ G  +NV      + +  +PF  T +Q  
Sbjct: 245 LKNAARNRLAFDELFILQLGVLAKKKRWHEQAGRALNVNIPDIDRFVSKLPFKLTDAQTK 304

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            + DI  D+S+   M R+LQG+VGSGKT+VA+I++  A   G Q   MAP  ILA+QH++
Sbjct: 305 CLADIKADISKGVPMSRLLQGEVGSGKTIVAVISLFTAAANGLQGAFMAPTEILAEQHFK 364

Query: 340 FIKK---------------YT----QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            + +               YT     +  + V ++  +M  + +    E+I  G+  I I
Sbjct: 365 SVTRLFASIARVSTLLDGIYTFEGLLDRPLKVALLISDMKGSQKDILKEKIKKGEVDIAI 424

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTHAL Q  I++  L L ++DEQHRFGV+QR  L  K   PH+L+MTATPIPRTL LT  
Sbjct: 425 GTHALIQKEIRFKSLGLAVIDEQHRFGVEQRSALRSKGLNPHILIMTATPIPRTLALTLY 484

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           GD+D+S I E P GR+ IKT  +   + +     ++  + EG++A+ ICP +EE +    
Sbjct: 485 GDLDLSVIDELPPGRQSIKTRWLKPEQRNSAYTFIRKQIQEGRQAFIICPLVEESEVIQA 544

Query: 501 RSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           ++    + +L       S +A++HGRM+  +KE++M  F  G   +L++T VIEVGID+ 
Sbjct: 545 KAATAEYETLSREVFPESRVALLHGRMNASEKETIMRHFSEGEMDILVSTPVIEVGIDIP 604

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A+++++E+A+ FGL+QLHQ RGRVGRG E S C+ L   P S     RLS++++T+DGF
Sbjct: 605 NAAVMLVESADRFGLSQLHQFRGRVGRGTEQSYCMFLAENP-SLLGQERLSIIESTQDGF 663

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLT 674
            +AEEDL+ R  GE  G +QSG+PK  +A   + D  LLE ARK+A  +   DP+L+
Sbjct: 664 KLAEEDLRLRGPGEFFGTRQSGLPKLRMAS--ISDVGLLEQARKEATRLFELDPELS 718


>gi|284047837|ref|YP_003398176.1| ATP-dependent DNA helicase RecG [Acidaminococcus fermentans DSM
           20731]
 gi|283952058|gb|ADB46861.1| ATP-dependent DNA helicase RecG [Acidaminococcus fermentans DSM
           20731]
          Length = 687

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 243/664 (36%), Positives = 370/664 (55%), Gaps = 24/664 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHP--SSFIDRHYRPKISEISEE-R 68
           P++  +G+G K +L         N N     DLL + P    ++D  +   I E++    
Sbjct: 6   PVTRLKGIGPKKALEFE------NINVVTIGDLLNHFPRQGCYLDYSHIRTIGELTTGGE 59

Query: 69  IVTITGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           +    G I + ++ +  +   Y  I + DGTG   ++ F  +T M + V+  G ++ V G
Sbjct: 60  MQLFRGTIVRMNNRRSARNLKYATITIGDGTGFAEIVLFGAQTYMTR-VYHTGDEVLVIG 118

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLP 186
           K+   +    +               P I   Y+L   L+ +  +  + +AL+     LP
Sbjct: 119 KVMPGRTAKSVTGASLSHVKEDGAEAPGILPTYALTGSLTQNQVRGAVRQALALARKELP 178

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + +L+ K F    EA   IH P+  +  E    AR+RL ++EL   Q  LL  R +
Sbjct: 179 ECLPEKILRAKQFLPRLEALENIHFPKSPELLE---KARQRLIFEELFFLQCGLLHHRVE 235

Query: 247 FKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            KK+  GI +   G + +K+L N+ FS T SQ+ A ++I  DM     M R++QGDVGSG
Sbjct: 236 IKKDSQGIKMARCGTLVRKVLDNLGFSLTDSQKKAWQEIDDDMQSPEPMNRLVQGDVGSG 295

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT +AL+A+A AVE G Q  +MAP  ILA+QHY+ ++K  +   I   ++TG +    RR
Sbjct: 296 KTALALLALAKAVENGYQGCLMAPTEILAEQHYQEMQKVLEPAGIRTALLTGGLSAKTRR 355

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVL 424
           + LE +A G    ++GT+AL QD + ++ L L I DEQHRFGV QR KL  K+  APHVL
Sbjct: 356 QVLEGLADGSIQAVVGTYALIQDKVVFHSLALAITDEQHRFGVAQRAKLQAKSQYAPHVL 415

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL LT  GD+D+S +   P GRKP++T+     +   V + +   + EG +
Sbjct: 416 VMTATPIPRTLALTVYGDLDVSLMKGLPPGRKPVRTLCYTEEKRPAVYQGMVHQIREGHQ 475

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTC 542
           AY +CP IEE +  + ++  E +  L   +   I   ++HGR+   +K++VM+SF     
Sbjct: 476 AYVVCPLIEESEGVDAKAAEELYEELTSTYLRGIPCGLLHGRLKPEEKDAVMESFARNET 535

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K+LI TTV+EVG++V +A++++IE A+ FGLAQ+HQLRGRVGRG   S C+LL     S 
Sbjct: 536 KVLITTTVVEVGVNVPNATLMVIEGADRFGLAQMHQLRGRVGRGSAQSYCVLL---TAST 592

Query: 603 NSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           N  T  RL ++++  DGFL+AE+DL+ R  G+  G++Q G+    IA        L  AR
Sbjct: 593 NPVTLERLQIMRSCSDGFLLAEKDLELRGAGQFFGLRQHGLSDLYIADILRDTDTLVEAR 652

Query: 661 KDAK 664
           K A+
Sbjct: 653 KAAQ 656


>gi|228998631|ref|ZP_04158218.1| ATP-dependent DNA helicase recG [Bacillus mycoides Rock3-17]
 gi|228761099|gb|EEM10058.1| ATP-dependent DNA helicase recG [Bacillus mycoides Rock3-17]
          Length = 682

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 232/681 (34%), Positives = 387/681 (56%), Gaps = 25/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G++ S  L ++     ++      LL + P  + D +    ++E+  E  VT
Sbjct: 8   PVTDVKGIGEETSELLHEMGIHTVSH------LLEHFPYRYED-YAMKDLAEVKHEERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K    E   +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTISISELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGSSIEEM 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   LL +       EA   +H P   +D +    AR R  Y+E    Q+ +  +RK  +
Sbjct: 175 LPDGLLGRYKLLPRYEALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQALRKMER 231

Query: 249 KEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G   ++  K  ++    +PF  T +Q   + +I++DM    RM R+LQGDVGSGKT
Sbjct: 232 ESSKGTKKDISMKELEEFTDALPFPLTGAQRRVVSEIIKDMQSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IA+ AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR+ 
Sbjct: 292 VVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFNMNVELLTSSVKGARRREV 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + ++ V+  ++  +++G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLERVLGFVEKEVNKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE VM+ F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLMHHYQGKFQVGLMHGRLSSQEKEDVMEKFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR+DA 
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETARQDAA 649

Query: 665 HILTQDPDLTSVRGQSIRILL 685
            ++  +    + +  ++R+ L
Sbjct: 650 VLVDSEAFWHNEQYAALRVYL 670


>gi|308173550|ref|YP_003920255.1| branch migrating ATP-dependent DNA helicase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606414|emb|CBI42785.1| branch migrating ATP-dependent DNA helicase involved in DNA
           recombination and repair [Bacillus amyloliquefaciens DSM
           7]
          Length = 682

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 231/637 (36%), Positives = 365/637 (57%), Gaps = 23/637 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF----QLQKRRPYKILLNDGT 98
           DLL Y P  + D   R  + E+  E  VT+ G +    S     + + R  +++L+  G 
Sbjct: 33  DLLNYFPYRYDDYELR-DLEEVKHEERVTVEGKVHSEPSLTYYGKKRNRLTFRVLV--GN 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             IT + F R    LK     G  +T++GK  K +  I +        N        IE 
Sbjct: 90  YLITAVCFNRP--YLKKKLTLGSVVTISGKWDKHRQTISVQE----LKNGPHQEDKSIEP 143

Query: 159 VYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VYS+   ++V + ++ I EAL   L  + + + + L      P   +A   +H P   + 
Sbjct: 144 VYSVKENVTVKMMRRFIKEALKHHLDNIADPLPEKLRISYKLPDYKQALQTMHQPETRES 203

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKS 276
            +    AR R  Y+E L  Q+ +   RK  +++  GI      +       ++PFS T +
Sbjct: 204 LQ---QARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHVFPAEKLAAFTASLPFSLTNA 260

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   +++I  D++   RM R+LQGDVGSGKT VA IA+ AA+ +G Q  +M P  ILA+Q
Sbjct: 261 QMRVLREITADLTSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ 320

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H + +     N  + + ++T ++    RR+ LER+A G+  I++GTHAL QD +++  L 
Sbjct: 321 HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALS 380

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV QR KL  K   P VL MTATPIPRTL +T  G++D+S I E PAGRK
Sbjct: 381 LVITDEQHRFGVDQRKKLRNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRK 440

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I+T  +  + ++ ++  ++  L +G++AY ICP IEE  + + ++ ++ +N L E +  
Sbjct: 441 QIETYWVKHDMLERILAFIEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSEVYRG 500

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             ++ ++HG++   +K+ VM  F    C++L++TTV+EVG++V +A+I++I +A+ FGL+
Sbjct: 501 KWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS 560

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG+  S CIL+  P  S+    R+ ++  T DGF ++E+DL+ R  G+  
Sbjct: 561 QLHQLRGRVGRGDHQSFCILMADPK-SETGKERMRIMSETNDGFELSEKDLELRGPGDFF 619

Query: 635 GIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670
           G KQSGMP+F +A   +HD   LE AR+DA ++++ +
Sbjct: 620 GKKQSGMPEFKVADM-VHDYRALETARQDAANLVSSE 655


>gi|195977526|ref|YP_002122770.1| ATP-dependent DNA helicase RecG [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974231|gb|ACG61757.1| ATP-dependent DNA helicase RecG [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 671

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 233/634 (36%), Positives = 367/634 (57%), Gaps = 25/634 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL Y+P  + D   +  +  +  E+ V +TG +    S Q    +  ++      GE+ 
Sbjct: 31  DLLLYYPFRYEDFKSKSALELLDGEKAV-LTGRVVTPPSVQYYGFKRNRLSFKLKQGELV 89

Query: 103 L-LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
           + + F+ +  +L  +  + +++ + G+  + K  +  +       +        ++ VY 
Sbjct: 90  ISVSFFNQPYLLDKIVLD-QEVAIFGRWDQRKAALTGMKLLMTLEDD-------LQPVYH 141

Query: 162 LPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           +  G+S     K I  A     L  L E + + L+QK        A   +H P+  +D++
Sbjct: 142 VAQGISQPALIKAIRSAFDSGALAQLEENLPEPLIQKYRLLPRQAAVYAMHFPKHMEDYK 201

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKE---IGIPINVEGKIAQKILRNIPFSPTKS 276
               A  R+ ++E    Q+ L +++   K E   + IP + +  +A+KI   +PFS T++
Sbjct: 202 ---QALRRIKFEEFFYFQMNLQVLKLANKAEGNGLAIPFHQQA-VAKKI-AALPFSLTRA 256

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+ ++++IL DM+    M R+LQGDVGSGKT++A +AM AA  AG Q+ +M P  ILA+Q
Sbjct: 257 QQRSLEEILADMTSGAHMNRLLQGDVGSGKTVIASLAMYAAQTAGFQSALMVPTEILAEQ 316

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY+ + +   +  I   ++T  M  A +R AL  IA G   +I+GTHAL QD++ Y+KL 
Sbjct: 317 HYDSLCQLFPDLSI--ALLTSGMKVAEKRTALSAIADGSVDMIVGTHALIQDTVTYHKLG 374

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV QR    +K   P VL+MTATPIPRTL +T+ G++D+S I E PAGRK
Sbjct: 375 LVITDEQHRFGVNQRRLFREKGNNPDVLMMTATPIPRTLAITAYGEMDVSIIDELPAGRK 434

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514
           PI T  +   ++D V+  +K  L++G +AY I P IEE +  + ++ V     L ++F  
Sbjct: 435 PIITRWVKHQQLDSVLAWVKTELAKGAQAYVISPLIEESETLDLKNAVALEAELKDYFKA 494

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           ++SIA++HG+M   DKE +M  FK     +L++TTVIEVG++V +A+I++I NA+ FGL+
Sbjct: 495 SASIALMHGKMKADDKEMIMQRFKAKEIDVLVSTTVIEVGVNVPNATIMLIMNADRFGLS 554

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG + S  IL+  P  + +   R++++  T DGF++AE DLK R  GEI 
Sbjct: 555 QLHQLRGRVGRGSKQSYAILVADPK-TDSGKERMTIMTTTNDGFVLAEADLKLRGSGEIF 613

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           G +QSG+P+F  A       +LE AR+ A  I+ 
Sbjct: 614 GTRQSGLPEFKTADIVEDYHILEEARRVATEIVA 647


>gi|315658488|ref|ZP_07911360.1| DNA helicase RecG [Staphylococcus lugdunensis M23590]
 gi|315496817|gb|EFU85140.1| DNA helicase RecG [Staphylococcus lugdunensis M23590]
          Length = 681

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 225/659 (34%), Positives = 368/659 (55%), Gaps = 19/659 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS  +G+G K    L+++      N     DL+ Y P+ + D      +S   ++ +VT
Sbjct: 12  PLSHIKGLGPKRIAILNEL------NIYSVGDLVLYLPTRYEDNTV-VDLSTAEDQTMVT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +     R   K+ ++     I +   +     LKN     +++TV GK  +
Sbjct: 65  VEGEVYSMPTVAFFGRNKSKLTIHLMINNIAVKCVFFNQPYLKNKIALNQRVTVKGKWNR 124

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
            K  I   + + +F N        +E +Y +  G+     + +I EAL R   + EW+ +
Sbjct: 125 AKQEI---NGNRMFFNQSSSKQDELEPIYRIKDGIKQKNMRDMIREAL-RDVTIHEWLSE 180

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKE 250
           DL  K    S+     I+H+P   KD      AR   A+ EL   ++ +  L R +   +
Sbjct: 181 DLKAKYKLESLESTIKILHHP---KDKAALLRARRTYAFTELFMFELRMQWLNRLEKAAD 237

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             I IN + +  +  +  +PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT+VA
Sbjct: 238 NAIEINYDLRQVKDFIDVLPFDLTDAQKQSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVA 297

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            I M A   AG Q+ +M P  ILA+QH E + K     ++ V ++TG++    R+  LE+
Sbjct: 298 AICMYALKTAGYQSALMVPTEILAEQHAESLVKLF-GERMNVALLTGSVKGKKRQLLLEQ 356

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           +A G    +IGTHAL Q+ +Q+  + LVI DEQHRFGV QR  L +K    +VL MTATP
Sbjct: 357 LAQGTIDCVIGTHALIQEDVQFNNIGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATP 416

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL ++  G++D+S I + P GRKPIKT      + ++V+ ++   L +G++AY ICP
Sbjct: 417 IPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYEQVLHQMTSELQKGRQAYVICP 476

Query: 491 QIEEKKE-SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            IE  +   + ++VV  + SL  ++ +  + ++HG++S  DK+ VM+ F      +L++T
Sbjct: 477 LIESSEHLEDVQNVVAIYESLQHYYGAKRVGLLHGKLSTEDKDDVMNQFSCHQIDILVST 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R+
Sbjct: 537 TVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERM 595

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +++  T DGF ++E DL+ R  G+  G+KQSG+P F++A       +LE+AR +A  ++
Sbjct: 596 TIMTQTNDGFELSERDLEMRGPGDFFGVKQSGLPDFMVANVVEDYRMLEVARDEASELI 654


>gi|330996640|ref|ZP_08320518.1| ATP-dependent DNA helicase RecG [Paraprevotella xylaniphila YIT
           11841]
 gi|329572712|gb|EGG54345.1| ATP-dependent DNA helicase RecG [Paraprevotella xylaniphila YIT
           11841]
          Length = 698

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/643 (36%), Positives = 366/643 (56%), Gaps = 20/643 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           DLL+  P   IDR     I E++ +   V I G I    +    ++R       DG G +
Sbjct: 34  DLLYTFPYKHIDRTRLYYIHELTADMPYVQIRGQILSFDTEGEGRKRRLVAHFTDGQGVV 93

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            L++F    + + + +       V G+      RI + HP     +   +N   ++  Y+
Sbjct: 94  DLIWF-NGIKYILSAYKTRTDYIVFGRPSVFNGRINIAHPDVDKADELRLNTMGLQPYYT 152

Query: 162 LP-----TGL---SVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
                   GL   S++ F   + E L     +PE +   L+   +  S+ EA   +H P 
Sbjct: 153 TTDKMKRAGLNSRSIEHFTATLFERLD--AEIPETLPPYLVSALNLVSLDEALRHVHYPT 210

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPF 271
            A+D      A+ RL ++EL   Q+ ++   R++ +K  G      G++      +N+PF
Sbjct: 211 SAEDLR---KAQFRLKFEELFYIQLNIIKYARERRQKYRGYVFARVGELFHTFYEKNLPF 267

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T +Q+  I++I QDM    +M R+LQGDVGSGKTLVAL+++  A++ G QA IMAP  
Sbjct: 268 ELTGAQKRVIREIRQDMGSGRQMNRLLQGDVGSGKTLVALMSILIALDNGFQACIMAPTE 327

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+QHY   +       + VE++TG +    R+  L+ +  G+  I++GTHA+ +D++ 
Sbjct: 328 ILAEQHYVTFQNLLSGMPVRVELLTGTVKGKRRQAVLDGLKDGEVRILVGTHAVLEDTVL 387

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +  L +V++DEQHRFGV QR +L  K +  PHVL+MTATPIPRTL +T  GD+D+S I E
Sbjct: 388 FKSLGMVVIDEQHRFGVAQRARLWAKNSNPPHVLVMTATPIPRTLAMTLYGDLDVSVIDE 447

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P GRKPI+TV    NR + +   L+  L+EG++AY + P I+E ++ + +++ E +  L
Sbjct: 448 LPPGRKPIQTVHQFDNRRESLYRGLRSQLNEGRQAYVVYPLIKESEKMDIKNLEEGYEQL 507

Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                   I+ +HG+M   +KE+ M  F +G  ++L+ATTVIEVG++V +AS+++IENAE
Sbjct: 508 CRDLPEYKISRVHGKMKAAEKEAEMQDFISGKTQILVATTVIEVGVNVPNASVMVIENAE 567

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            FGLAQLHQLRGRVGRG + S CIL+    LS ++  R+ ++  T DGF IAE DLK R 
Sbjct: 568 RFGLAQLHQLRGRVGRGADQSYCILVTKYQLSADTRKRIQIMTETNDGFEIAEADLKLRG 627

Query: 630 EGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDP 671
            G++ G +QSG+   L +A       +L++AR+ A+ +L  DP
Sbjct: 628 PGDLEGTQQSGVSFTLRLANLARDGQVLQLARETAEKVLDDDP 670


>gi|289809908|ref|ZP_06540537.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 562

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/520 (41%), Positives = 313/520 (60%), Gaps = 14/520 (2%)

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR--- 213
           VY    G+     +K+  +AL  L    + E +  +L Q     S+ EA   +H P    
Sbjct: 20  VYPTTEGVKQATLRKLTDQALELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPTL 77

Query: 214 KAKDFEWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
           +  D E    PA+ RL  +ELLA  +++L +R   ++    P++    +  K+L ++PF 
Sbjct: 78  QLADLETGKHPAQRRLILEELLAHNLSMLALRAGAQRYHTQPLSTNNILKDKLLASLPFK 137

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
           PT +Q   + +I +DM+    M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +
Sbjct: 138 PTSAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTEL 197

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QH    + + +   + V  + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+
Sbjct: 198 LAEQHANNFRNWFEPLGVEVGWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQF 257

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKI 448
             L LVI+DEQHRFGV QRL L +K       PH L+MTATPIPRTL +T+  D+D S I
Sbjct: 258 NGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVI 317

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
            E P GR P+ TV IP  R  E+I+R++    +EG++AYW+C  IEE      ++    +
Sbjct: 318 DELPPGRTPVTTVAIPDTRRHEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATW 377

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             L       +I ++HGRM   +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIE
Sbjct: 378 EELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIE 437

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           N E  GLAQLHQLRGRVGRG   S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+
Sbjct: 438 NPERLGLAQLHQLRGRVGRGAVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLE 497

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            R  GE+LG +Q+G  +F +A      +++   ++ A+HI
Sbjct: 498 IRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRIARHI 537


>gi|328911691|gb|AEB63287.1| branch migrating ATP-dependent DNA helicase involved in DNA
           recombination and repair [Bacillus amyloliquefaciens
           LL3]
          Length = 682

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 230/637 (36%), Positives = 365/637 (57%), Gaps = 23/637 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF----QLQKRRPYKILLNDGT 98
           DLL Y P  + D   R  + E+  E  VT+ G +    S     + + R  +++L+  G 
Sbjct: 33  DLLNYFPYRYDDYELR-DLEEVKHEERVTVEGKVHSEPSLTYYGKKRNRLTFRVLV--GN 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             IT + F R    LK     G  +T++GK  K +  + +        N        IE 
Sbjct: 90  YLITAVCFNRP--YLKKKLTLGSVVTISGKWDKHRQTVSVQE----LKNGPHQEDKSIEP 143

Query: 159 VYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VYS+   ++V + ++ I EAL   L  + + + + L      P   +A   +H P   + 
Sbjct: 144 VYSVKENVTVKMMRRFIKEALKHHLDNIADPLPEKLRISYKLPDYKQALQTMHQPETRES 203

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKS 276
            +    AR R  Y+E L  Q+ +   RK  +++  GI      +       ++PFS T +
Sbjct: 204 LQ---QARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHVFPAEKLAAFTASLPFSLTNA 260

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   +++I  D++   RM R+LQGDVGSGKT VA IA+ AA+ +G Q  +M P  ILA+Q
Sbjct: 261 QMRVLREITADLTSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ 320

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H + +     N  + + ++T ++    RR+ LER+A G+  I++GTHAL QD +++  L 
Sbjct: 321 HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALS 380

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV QR KL  K   P VL MTATPIPRTL +T  G++D+S I E PAGRK
Sbjct: 381 LVITDEQHRFGVDQRKKLRNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRK 440

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I+T  +  + ++ ++  ++  L +G++AY ICP IEE  + + ++ ++ +N L E +  
Sbjct: 441 QIETYWVKHDMLERILAFIEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSEVYRG 500

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             ++ ++HG++   +K+ VM  F    C++L++TTV+EVG++V +A+I++I +A+ FGL+
Sbjct: 501 KWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS 560

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG+  S CIL+  P  S+    R+ ++  T DGF ++E+DL+ R  G+  
Sbjct: 561 QLHQLRGRVGRGDHQSFCILMADPK-SETGKERMRIMSETNDGFELSEKDLELRGPGDFF 619

Query: 635 GIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670
           G KQSGMP+F +A   +HD   LE AR+DA ++++ +
Sbjct: 620 GKKQSGMPEFKVADM-VHDYRALETARQDAANLVSSE 655


>gi|253682695|ref|ZP_04863492.1| ATP-dependent DNA helicase RecG [Clostridium botulinum D str. 1873]
 gi|253562407|gb|EES91859.1| ATP-dependent DNA helicase RecG [Clostridium botulinum D str. 1873]
          Length = 673

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 243/662 (36%), Positives = 375/662 (56%), Gaps = 36/662 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +++ +G+G K    L+K   CG     + +DLL Y P  +    Y   I+ + +   V I
Sbjct: 7   VASLKGIGPKTQELLNK---CG---IYKILDLLLYFPRDYEKIQYCNDINNLKDADKVII 60

Query: 73  TGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
              + Q       KR      ++      E    +F +K   +KN F    +  + GK+K
Sbjct: 61  KAKVKQIKKDIYVKRNMIISSVIFTKNNLEFEGKWFNQK--YIKNKFKLNEECIILGKVK 118

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
             +++I +++P+ + +  + +N   I   YSL   L+ + F K I   LS + ++ E I 
Sbjct: 119 MDRHKISIINPNILENTEKLLN---ITPKYSLKGNLTNNFFNKTINYILSNITIV-ENIP 174

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           K++L K    S+ +A   IHNP++    E    A +RL + EL    + LL++ KQ+KK 
Sbjct: 175 KNILDKYDLLSLDKAIRSIHNPKQE---EELLNAMKRLKFQELFTYSLKLLML-KQYKKS 230

Query: 251 IGIPINVEGKIAQ--KILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
            GI      KIA+  KIL+ ++PF+ T +Q   +++IL D  +   M R++QGDVGSGKT
Sbjct: 231 KGIAF----KIAEELKILKESLPFTLTDAQNKVVREILIDEKRDRPMNRLVQGDVGSGKT 286

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +V+LIA+   V+ G Q V+MAP  ILA QHY+      +   + +E++TG+  +    K+
Sbjct: 287 IVSLIALFNVVKNGYQGVLMAPTEILANQHYQQAINLLEKFNVRIELLTGSTKKKDIIKS 346

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             ++  G+  I+IGTHAL +D +++  L +V+ DEQHRFGV+QR K+  K     VL+MT
Sbjct: 347 --KLKSGEIDIVIGTHALLEDDVEFNNLGMVVTDEQHRFGVKQRSKIYNKNNNIDVLVMT 404

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL L+  GD+DIS I + P GRK I T  +  N+ + V       +  G + Y 
Sbjct: 405 ATPIPRTLALSLYGDLDISTIDKLPPGRKKIDTFSVRENKRNRVYNFALKEIQNGAQVYI 464

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP +E  +E N +SV +    L + + +   + I+HG+M    KE +M+ FK G  K+L
Sbjct: 465 VCPFVEANEELNIKSVEKLHMELKDEYFNDVEVEILHGKMPSKSKEEIMERFKMGKTKVL 524

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           I+TTVIEVG++V +A+++IIE+AE FGL+QLHQLRGRVGRG + S CIL+ +     N+Y
Sbjct: 525 ISTTVIEVGVNVPNATLMIIESAERFGLSQLHQLRGRVGRGNKKSYCILITNS----NNY 580

Query: 606 ---TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R++++  + DGF IAEEDLK R  GEI G  Q G   F+I+       +   A K+
Sbjct: 581 ITKQRMNIITKSNDGFFIAEEDLKLRGSGEIFGFNQHGENGFIISDIINDYRIFRNANKE 640

Query: 663 AK 664
           AK
Sbjct: 641 AK 642


>gi|299532849|ref|ZP_07046236.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni S44]
 gi|298719073|gb|EFI60043.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni S44]
          Length = 701

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 234/666 (35%), Positives = 357/666 (53%), Gaps = 33/666 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL  + P  + D     ++    +   V I   ++ HS  QL+ RR  K+ ++DG+
Sbjct: 24  TRDIDLALHLPLRYEDETRIVRLKNARDGETVQIEATVT-HSEVQLRPRRMLKVTVDDGS 82

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--DVNFPLI 156
               L FF       K +   G ++ + G++K       M+HP +     +      P+ 
Sbjct: 83  STCLLTFFSFYPSQQKTMA-PGARLRIRGEVKGGFWGRQMMHPAFRVAGGELPTALTPVY 141

Query: 157 EAVYSLPTG-----LSVDLFKKIIVEAL--SRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209
            A  SLP       ++  L +  + E L   + P + ++  ++ LQ      +  A   +
Sbjct: 142 PATASLPQAYLRRAIASALLRADLSETLPPGQSPPIAQFYGQNGLQPAY--DLRNALIFL 199

Query: 210 HNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM---RKQFKKEIGIPINVEGKIA 262
           H+P          + + PA +RL  +ELLA Q++       R + +  +  P      + 
Sbjct: 200 HHPTPDVALVTLEDHSHPAWQRLKAEELLAQQLSQYEAKRERARLRAPVLRPQAGMADLT 259

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+ L  +PF  T +Q+  + +I  DM ++  M R+LQGDVGSGKT+VA ++  A +EAG 
Sbjct: 260 QQFLAQLPFGLTGAQQRVVGEIRADMERRIPMHRLLQGDVGSGKTVVAALSAVACIEAGW 319

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQII----VEIITGNMPQAHRRKALERIAHGQAHI 378
           Q  +MAP  ILA+QH+  +  + +         V  + G   +  R   L  +  G+A +
Sbjct: 320 QCALMAPTEILAEQHFGKLVGWLEPILAPLGKKVAWLAGAQKKKERAAMLALVESGEAAL 379

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRT 434
           ++GTHA+ Q+ +Q+  L L ++DEQHRFGV QRL L QK  A    PH+L+M+ATPIPRT
Sbjct: 380 VVGTHAVIQEQVQFKNLALAVIDEQHRFGVAQRLALRQKLAATGMEPHLLMMSATPIPRT 439

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PI T +I  +R DEVIER+   ++ G++ YW+CP IEE
Sbjct: 440 LAMSYYADLDVSTIDELPPGRTPIVTKLISDSRKDEVIERIGAQVASGRQVYWVCPLIEE 499

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +  +  +       L E      + ++H RM   +K++VM+ F  G   +L++TTVIEV
Sbjct: 500 SEALDLSNATATHEYLSEMLPGVMVGLLHSRMPTAEKKAVMELFSAGVMGVLVSTTVIEV 559

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY----HPPLSKNSYTRLS 609
           G+DV +AS+++IE++E FGL+QLHQLRGRVGRG   S+C+LLY    +  LS     RL 
Sbjct: 560 GVDVPNASLMVIEHSERFGLSQLHQLRGRVGRGAAASACVLLYSVNDNGRLSDTGKERLR 619

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            +  T DGF IA  DL+ R  GE LG +QSG P    A  E    LL+ AR+ A  +L Q
Sbjct: 620 AMAETNDGFEIARRDLEIRGPGEFLGARQSGAPMLRFADLEQDVMLLDWARELAPLMLEQ 679

Query: 670 DPDLTS 675
            P L +
Sbjct: 680 FPALAA 685


>gi|259503534|ref|ZP_05746436.1| DNA helicase RecG [Lactobacillus antri DSM 16041]
 gi|259168612|gb|EEW53107.1| DNA helicase RecG [Lactobacillus antri DSM 16041]
          Length = 678

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 232/676 (34%), Positives = 361/676 (53%), Gaps = 40/676 (5%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID----------- 54
           +  L  P++  +GVG K +  L+ +            DLL Y+PS + D           
Sbjct: 1   MKSLQDPVAALKGVGPKRAADLATL------GIDTVEDLLTYYPSRYDDVTPADLDNVQD 54

Query: 55  RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLK 114
           R        +  E +++  GY     SF+LQ               + ++ F+ +  + K
Sbjct: 55  RQRITTQGTVVSEPLLSHFGYRRSRLSFRLQV-----------GPRVIMVTFFNQAYLAK 103

Query: 115 NVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKI 174
            V   G+ +TV GK    + ++      ++   +QD       A+Y +   +     + +
Sbjct: 104 RVAL-GQTVTVMGKWDAQRAQVTA--NKFLAAGAQDSGDS--GAIYPVNKHIRQATLRGL 158

Query: 175 IVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
           I +A      V+P  +   L Q             +H P   ++      AR   AY+E 
Sbjct: 159 IRQAFDEYQNVIPTLLPAPLRQHYRLLDRRTMIKALHFP---ENVGQAKAARRTAAYEEF 215

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
              Q+ L  +R+  +   G PI       +  +  I F  T +Q+  + +I +D+    +
Sbjct: 216 FLFQLRLQAIRQARRHADGNPILYHNDELKNFIAGIGFELTGAQKRVVNEICRDLRAPYQ 275

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA IA+ A + AG QA +MAP  ILA QH E + +    T + V 
Sbjct: 276 MNRLLQGDVGSGKTIVAAIAIYATITAGYQAALMAPTEILAAQHAEKLARTFAGTHVHVG 335

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG++     R+ +  I  G+ +++IGTHAL QD ++Y  L LVI DEQHRFGV QR  
Sbjct: 336 LLTGSLTAKQHRELVGAIKRGEINLVIGTHALIQDDVEYANLGLVITDEQHRFGVNQRQL 395

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGRKPI+T  + +N+  E + 
Sbjct: 396 LREKGDQPDVLAMTATPIPRTLAITAYGEMDVSVIDELPAGRKPIETCWLKLNQQSEALH 455

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKE 531
            L+  L+ G + Y + P IEE    + ++  + +N L E+F     + ++HGR+S  +K+
Sbjct: 456 FLRDQLAGGAQVYIVSPLIEESAALDVQNATDLYNELAEYFQPRYQVGLLHGRLSAEEKD 515

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            VM  F+ G  +LL++TTVIEVG+D  +A+++++ NA+ FGLAQLHQLRGRVGRG+  S 
Sbjct: 516 RVMHKFQQGEYQLLVSTTVIEVGVDNPNATVMMVYNADRFGLAQLHQLRGRVGRGDRQSY 575

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C+LL  P   +    R+  +  T DGF++A+ DL+ R  G++LG KQSGMP+F +  P  
Sbjct: 576 CLLLADPKTDEGQ-ERMKTMVETNDGFVVAQRDLELRGSGDVLGNKQSGMPEFKVGDPVG 634

Query: 652 HDSLLEIARKDAKHIL 667
              +L+IAR+DA  +L
Sbjct: 635 DLKMLQIARQDATDLL 650


>gi|304383222|ref|ZP_07365695.1| DNA helicase RecG [Prevotella marshii DSM 16973]
 gi|304335693|gb|EFM01950.1| DNA helicase RecG [Prevotella marshii DSM 16973]
          Length = 698

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 244/671 (36%), Positives = 381/671 (56%), Gaps = 26/671 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI-SEERIVTITG 74
            +GVG K    LSK ++  +     + DLL Y+P  ++DR     I E+ S+   V I G
Sbjct: 11  LQGVGPKRKEILSKELHIES-----YRDLLEYYPYKYVDRSRIYAIDELRSDMPFVQIKG 65

Query: 75  YISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
            I     +   +RR   I    DG G + L++F     + KN       I V G+     
Sbjct: 66  RILSFEEYDTGRRRKRIIAHFTDGHGVVDLVWFQGTQYVYKNYRVNTDYI-VFGRPSLYN 124

Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAV-YSLPT------GLSVDLFKKIIVEALSRLPV-L 185
            R    HP     N+  +    +    Y + T      G++    +K+    + ++P  L
Sbjct: 125 GRYQFAHPD--IENAAQLQLSTMGMQPYYVTTERMKKAGITSRAIEKLTKTLIEKIPSPL 182

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PE +   + Q     S  EA   IH P+ A+D   TS AR RL ++EL   Q+ +L    
Sbjct: 183 PETLPPFITQPLHLISRDEACRKIHYPQSAED---TSRARLRLKFEELFYVQLNILRYAS 239

Query: 246 QFKKEI-GIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
             K++  G      G +  +    N+PF  T++Q+  I++I  DM+  ++M R+LQGDVG
Sbjct: 240 DHKRKYRGYVFTRVGSLFNRFYSSNLPFPLTEAQKRVIREIRSDMASGSQMNRLLQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVAL++M  A++ G QA IMAP  ILA+QH   I  + +   + VE++TG +    
Sbjct: 300 SGKTLVALMSMLIALDNGFQACIMAPTEILAEQHLTTIGTFLKGMDVRVELLTGMVKGRR 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPH 422
           R+  LE +A+G+  I++GTHA+ ++++Q+ +L   +VDEQHRFGV QR +L  K+   PH
Sbjct: 360 RQAILEGLANGEVQILVGTHAVIEENVQFARLGFAVVDEQHRFGVAQRARLWSKSENPPH 419

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+     ++  + + ++  +  G
Sbjct: 420 VLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTLHKYDTQLTSLYQSIRREIELG 479

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++ Y + P I E ++ + +++ + + +L E F    ++ +HG+M   +KE+ M  F +G 
Sbjct: 480 RQVYIVFPLISESEKIDLKNLEDGYAALLEIFPEYRLSKVHGKMKSAEKEAEMQRFISGE 539

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L+ATTVIEVG++V +AS++II +A+ FGL+QLHQLRGRVGRG E S CIL+    LS
Sbjct: 540 TQILVATTVIEVGVNVPNASVMIIMDAQRFGLSQLHQLRGRVGRGAEQSYCILVSPFKLS 599

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIAR 660
             +  R+ ++  T DGF IAE DLK R  G++ G +QSG+   L IA       ++++AR
Sbjct: 600 AETRRRIDIMCETNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQIVQLAR 659

Query: 661 KDAKHILTQDP 671
           ++A+ I+  DP
Sbjct: 660 EEARKIIETDP 670


>gi|301299276|ref|ZP_07205562.1| ATP-dependent DNA helicase RecG [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853120|gb|EFK80718.1| ATP-dependent DNA helicase RecG [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 676

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 240/676 (35%), Positives = 379/676 (56%), Gaps = 56/676 (8%)

Query: 13  LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           +   RGVG K    L+K+ +N          DLL ++P  + D   +  + EI+ +  VT
Sbjct: 7   VGVLRGVGPKKIQALNKLGVNT-------IEDLLTFYPFRYNDIAVK-NLEEINSQEKVT 58

Query: 72  ITGYISQHS---SFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           + G ++       F  +K R  +K+L+N     +T   F+ +  + K V   G+++ V G
Sbjct: 59  LKGIVASEPVLVRFGRKKSRLNFKLLINHDVIGVT---FFNQPWISKQVT-TGQELAVYG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL----- 182
           K   L+  +  +    I   + D        VY     +   + K+++ +A         
Sbjct: 115 KYDALRQSLSGIK--IISRKTND-----FVGVYRSSKDIKESVVKQLVKQAYEEYNSYIR 167

Query: 183 PVLPEWIE--------KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            V+PE I         K ++    FPS           +K  D      AR    +DE  
Sbjct: 168 DVVPESIRIKYHLENRKQMIHDMHFPST----------KKEADL-----ARRSAIFDEFF 212

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           + +  L L+++   K +G+ I    +  ++ ++ +PF  TK+Q+  + +I  DM   N M
Sbjct: 213 SFEAGLQLLKRDNHKNMGLRIKYNNEKLKEFIKGLPFELTKAQKRVVNEICADMLSPNHM 272

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVGSGKT++A IAM A V AG QAV+MAP  ILAQQH E +    +   I V +
Sbjct: 273 NRLLQGDVGSGKTIIAAIAMYATVTAGFQAVLMAPTEILAQQHAEKLANLFEQYGISVAL 332

Query: 355 ITGNMPQ--AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
           +T +       +R+ L+ + +G   I+IGTHA+ QD+I+++ L L I DEQHRFGV QR 
Sbjct: 333 MTSSSLSRVKVKRELLKHLKNGDIDIVIGTHAVIQDNIEFHNLGLAITDEQHRFGVNQRR 392

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L +K   P +L MTATPIPRTL +T+ G++D+S I E P GR+P+KT  +   ++  V 
Sbjct: 393 ILRKKGVNPEILAMTATPIPRTLAITTYGEMDVSIIDELPKGRQPVKTSWVKKKQVKNVF 452

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKE 531
           E +K  L  G +AY I P +EE +  + ++  E F    E+F S  +A++HG+M   +KE
Sbjct: 453 EFVKRQLELGTQAYIISPLVEESELLDLQNAEEVFEKAKEYFGSEKVALLHGKMDANEKE 512

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             M +FKN    +L++TTVIEVG+DV +A+++II +A+ FGLAQLHQLRGRVGRG + S 
Sbjct: 513 QAMQAFKNKEVSILVSTTVIEVGVDVPNATVMIILDADRFGLAQLHQLRGRVGRGSKESY 572

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           CIL+  P  S+    R+ ++  T DGFLI+++DL+ R  GE+LG KQSG+P+F +  P +
Sbjct: 573 CILVADPK-SEYGKERMKIMTETNDGFLISQKDLELRGPGEVLGKKQSGLPEFKVGDPVV 631

Query: 652 HDSLLEIARKDAKHIL 667
           + ++L++A+++A +++
Sbjct: 632 NLNILQVAQEEAHNVV 647


>gi|227530549|ref|ZP_03960598.1| DNA helicase RecG [Lactobacillus vaginalis ATCC 49540]
 gi|227349555|gb|EEJ39846.1| DNA helicase RecG [Lactobacillus vaginalis ATCC 49540]
          Length = 679

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 231/670 (34%), Positives = 365/670 (54%), Gaps = 26/670 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            +  L  P+S  +GVG K      ++ +    N     DLL Y+P+ + D      +S +
Sbjct: 1   MMKSLQDPVSVLKGVGPK------RVADLATLNIDTIEDLLTYYPTRY-DDFTANDLSTV 53

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKI 123
            +++ VTI G I     F     R  ++      G+ + +  F+ +  + K V  + R++
Sbjct: 54  KDKQRVTIKGKIVSEPLFSRFGYRRNRLSFRLQVGQQVVMATFFNQPYLKKQVELD-RQV 112

Query: 124 TVTGKIKKLKNRII---MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           TV GK    + ++    +V       N          A+Y     L     + +I +A  
Sbjct: 113 TVMGKWDASRQQVTGTKLVTATGTPENE-------FGAIYPTNKHLRQSTLRSLIRQAYE 165

Query: 181 RLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
               V+P  +   L QK       E    +H P           AR    Y+E    Q+ 
Sbjct: 166 DYQRVIPTLLPTFLRQKYRLLDRREMIKDLHFPGSQM---IAKAARRTATYEEFFLFQLR 222

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L  +R+  ++E G  I       ++ +  +PF  T +Q+  + +I +D+ Q  +M R+LQ
Sbjct: 223 LQAIRRAHRQEDGTRILYHNDELKEFISQLPFELTNAQKKVVNEICRDLRQPIQMNRLLQ 282

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA IA+ A + AG QA +MAP  ILA QH E + K    T + V ++TG++
Sbjct: 283 GDVGSGKTIVAAIAIYATISAGYQAALMAPTEILATQHAEKLAKVFAGTHVHVGLLTGSL 342

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                R+ +  I  G  ++IIGTHAL Q  ++Y  L LVI DEQHRFGV QR +L +K  
Sbjct: 343 TAKQHRELVGAIKKGDINLIIGTHALIQSDVEYANLGLVITDEQHRFGVNQRQQLREKGE 402

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P VL MTATPIPRTL +TS G++D+S I + PAGRKPI+T  +   + ++ ++ L+  L
Sbjct: 403 HPDVLAMTATPIPRTLAITSYGEMDVSVIDKLPAGRKPIETRWLKDKQSNDALKFLRQQL 462

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSF 537
           + G +AY + P IEE +  + ++  + +  L  +F     + ++HGR++   K++VM  F
Sbjct: 463 ASGAQAYVVSPLIEESEALDVQNATDLYERLANYFQPDYQVGLLHGRLNGEKKDAVMKDF 522

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G  ++L++TTV+EVG+D  +A+++II NA+ FGLAQLHQLRGRVGRGE  S C+L+  
Sbjct: 523 QDGKIQVLVSTTVVEVGVDNPNATVMIIYNADRFGLAQLHQLRGRVGRGERQSYCLLIAD 582

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           P   + +  R+  +  T DGF +A+ DL+ R  G++LG KQSG+P F +  P     +L+
Sbjct: 583 PKTDEGT-ARMKTMVATTDGFKVAQRDLELRGAGDVLGAKQSGLPDFKVGDPIGDLKILQ 641

Query: 658 IARKDAKHIL 667
           IA++DA ++L
Sbjct: 642 IAKEDAANLL 651


>gi|297191821|ref|ZP_06909219.1| ATP-dependent DNA helicase RecG [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197722012|gb|EDY65920.1| ATP-dependent DNA helicase RecG [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 738

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 238/712 (33%), Positives = 380/712 (53%), Gaps = 71/712 (9%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100
           DLL ++P  + +R     +SE+  +  VT+   ++     +F   + R  ++ + DG+G 
Sbjct: 44  DLLHHYPRRYAERGELTSLSELPLDEHVTVVAQVADARIHTFNQGRGRRLEVTITDGSGR 103

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--------------IFH 146
           + L+FF +           G +    GK+     ++ + HP Y               F 
Sbjct: 104 LQLVFFGKGVHKPHKDLLPGTRAMFAGKVSVFNRKLQLSHPAYEPLSGGASAADAVDAFA 163

Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
           N     +P  + + S     ++D       EA+  LP         L + +   ++ +A 
Sbjct: 164 NQLIPIYPACKQLESWKISKAIDAVLDRSAEAVDPLP-------PALREGRGMATLPDAL 216

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI----NVEGKIA 262
             IH PR   D E    ARERL +DE    Q+AL   R+++  +  +P      V G + 
Sbjct: 217 RKIHRPRTKADIE---AARERLKWDEAFVLQVAL--ARRRYA-DTQLPAVARRPVPGGLL 270

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
                 +PF+ T+ Q+S  K+I  D++ ++ M R+LQG+VGSGKT+VAL AM A V+AGG
Sbjct: 271 DAFDAELPFTLTEGQQSVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDAGG 330

Query: 323 QAVIMAPIGILAQQHYEFIKKYT-------------QNTQIIVEIITGNMPQAHRRKALE 369
           QA ++AP  +LAQQH+  I +               Q T+++  ++TG+M  A RR AL 
Sbjct: 331 QAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGAEQGTKVV--LLTGSMGAAARRHALL 388

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTA 428
            +  G+A I+IGTHAL +D ++++ L LV+VDEQHRFGV+QR  L  K    PH+L+MTA
Sbjct: 389 DLVTGEAGIVIGTHALIEDKVRFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTA 448

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKK 484
           TPIPRT+ +T  GD++ S + + PAGR PI + ++P       +    ER++  +  G +
Sbjct: 449 TPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKPHFLSRAWERVREEVEGGHQ 508

Query: 485 AYWICPQIEEKKESNFR-------------SVVERFNSLHEHFTSS--IAIIHGRMSDID 529
           AY +CP+I + +E   +             +V+E  + L +   S   + ++HGRM+  D
Sbjct: 509 AYVVCPRIGDDEEQPKKKTAEDEAEKRPPLAVLEVADQLAKGPLSGLRVEVLHGRMAPDD 568

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+ VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG   
Sbjct: 569 KDDVMRRFSAGDVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAP 628

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
             C+L+   P +  +  RL+ + +T DGF ++  DL+QR+EG++LG  QSG+   L    
Sbjct: 629 GLCLLVTEMPEASPARQRLAAVASTLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLT 688

Query: 650 ELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            + D  ++  AR++A  I+  DPDL   R   +R  L      E  Q++  G
Sbjct: 689 VIEDEEVIAAAREEAVAIVGADPDLE--RLPELRTALDALLDKEREQYLDKG 738


>gi|289550993|ref|YP_003471897.1| ATP-dependent DNA helicase RecG [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180525|gb|ADC87770.1| ATP-dependent DNA helicase RecG [Staphylococcus lugdunensis
           HKU09-01]
          Length = 681

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 224/659 (33%), Positives = 368/659 (55%), Gaps = 19/659 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS  +G+G K    L+++      N     DL+ Y P+ + D      +S   ++ +VT
Sbjct: 12  PLSHIKGLGPKRIAILNEL------NIYSVGDLVLYLPTRYEDNTV-VDLSTAEDQTMVT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +     R   K+ ++     I +   +     LKN     +++TV GK  +
Sbjct: 65  VEGEVYSMPTVAFFGRNKSKLTIHLMINNIAVKCVFFNQPYLKNKIALNQRVTVKGKWNR 124

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
            K  I   + + +F N        +E +Y +  G+     + +I EAL  + +  EW+ +
Sbjct: 125 AKQEI---NGNRMFFNQSSSKQDELEPIYRIKDGIKQKNMRDMIREALRDVKI-HEWLSE 180

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKE 250
           DL  K    S+     I+H+P   KD      AR   A+ EL   ++ +  L R +   +
Sbjct: 181 DLKAKYKLESLESTIKILHHP---KDKAALLRARRTYAFTELFMFELRMQWLNRLEKAAD 237

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             I IN + +  +  +  +PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT+VA
Sbjct: 238 NAIEINYDLRQVKDFIDVLPFDLTDAQKQSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVA 297

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            I M A   AG Q+ +M P  ILA+QH E + K     ++ V ++TG++    R+  LE+
Sbjct: 298 AICMYALKTAGYQSALMVPTEILAEQHAESLVKLF-GERMNVALLTGSVKGKKRQLLLEQ 356

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           +A G    +IGTHAL Q+ +Q+  + LVI DEQHRFGV QR  L +K    +VL MTATP
Sbjct: 357 LAQGTIDCVIGTHALIQEDVQFNNIGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATP 416

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL ++  G++D+S I + P GRKPIKT      + ++V+ ++   L +G++AY ICP
Sbjct: 417 IPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYEQVLHQMTSELQKGRQAYVICP 476

Query: 491 QIEEKKE-SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            IE  +   + ++VV  + SL  ++ +  + ++HG++S  DK+ VM+ F      +L++T
Sbjct: 477 LIESSEHLEDVQNVVAIYESLQHYYGAERVGLLHGKLSTEDKDDVMNQFSCHQIDILVST 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R+
Sbjct: 537 TVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERM 595

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +++  T DGF ++E DL+ R  G+  G+KQSG+P F++A       +LE+AR +A  ++
Sbjct: 596 TIMTQTNDGFELSERDLEMRGPGDFFGVKQSGLPDFMVANVVEDYRMLEVARDEASELI 654


>gi|300863472|ref|ZP_07108427.1| ATP-dependent DNA helicase recG [Oscillatoria sp. PCC 6506]
 gi|300338535|emb|CBN53569.1| ATP-dependent DNA helicase recG [Oscillatoria sp. PCC 6506]
          Length = 694

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/655 (35%), Positives = 372/655 (56%), Gaps = 26/655 (3%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI---LLN 95
           T  +DLL Y P  +I ++ R KI+ +     VTI G I +H      K     I   ++ 
Sbjct: 27  TSILDLLLYFPRDYI-KYRRVKIAGLQIGDSVTIVGKIKKHEIISPPKNPRLTIQTLIVK 85

Query: 96  DGTGEITLLFF----YRKTEMLKN----VFFEGRKITVTGKIKKLKNR-IIMVHPHY--- 143
           D TG I    F    Y +++  +N    ++  G  +TV+G +K  +   +I+  P     
Sbjct: 86  DKTGNIACKRFFNHTYYQSQQWRNEQNLMYVNGSIVTVSGVVKADRYYGMILTSPEIQLI 145

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                +D    +I  +Y L  G+S ++ ++ +  AL    +L + + + L +K     + 
Sbjct: 146 DLDQVRDTKNSII-PIYPLTKGVSNEIVQEAVSSALEMTELLIDPLPQHLRRKCGLMELQ 204

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIA 262
            A   IH P      E    AR RL +DE    Q++ L+ R+Q      I  I     + 
Sbjct: 205 VAIANIHQPPDEPQLE---AARRRLVFDEFFYLQLSFLVRRRQLLARSAITKITPTSPLV 261

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++    +PFS T +Q   I DIL DM+ K  M R++QGDVGSGKT+VA++A+  A+++G 
Sbjct: 262 EQFYSQLPFSLTLAQRQVINDILNDMTAKTPMNRLVQGDVGSGKTVVAVVAILVAIQSGY 321

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA +MAP  +LA+QHY  I  + +   + V+++TG+   A RR+   ++  G+  +++GT
Sbjct: 322 QAALMAPTEVLAEQHYRKIATWFEPLGVSVQLLTGSTKTAKRREIHAQLETGELSLLVGT 381

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           HAL Q+ + + +L LV++DEQHRFGVQQR  L  K   PHVL MTATPIPRTL LT  GD
Sbjct: 382 HALLQEKVNFNQLGLVVIDEQHRFGVQQRQNLLNKGNRPHVLTMTATPIPRTLALTLHGD 441

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +D+S+I E P GR+ I T +  IN+     + +   + +G++AY I P +EE ++ + R+
Sbjct: 442 LDVSQIDELPPGRQKIHTKV--INKGAPAYDFIHHQVLQGRQAYIILPLVEESEKLDLRA 499

Query: 503 VVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            V  +  L         + ++HGRM+  +K+  + SF++   ++L++TTV+EVG+DV +A
Sbjct: 500 AVAEYERLSTEIFPEFRVGLLHGRMTSAEKDEALKSFRDNKTQILVSTTVVEVGVDVPNA 559

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           ++I+I++A+ FGLAQLHQLRGRVGRG   S C+LL     +  +  RL VL+ + DGF I
Sbjct: 560 TVILIDHADRFGLAQLHQLRGRVGRGSHRSYCLLL-DTSKTAEAKARLEVLEKSTDGFFI 618

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           +E DL+ R  G ++G +QSG+ +F +A     + LL +AR  A  I+  DP+L +
Sbjct: 619 SEMDLRLRGPGVVMGYRQSGISEFALANILDDEDLLNLARCMAVVIVKSDPNLEA 673


>gi|300775765|ref|ZP_07085626.1| DNA helicase RecG [Chryseobacterium gleum ATCC 35910]
 gi|300505792|gb|EFK36929.1| DNA helicase RecG [Chryseobacterium gleum ATCC 35910]
          Length = 695

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/679 (34%), Positives = 376/679 (55%), Gaps = 24/679 (3%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE--RIVTITG 74
           +G+G + +  +  ++           D+L ++P  ++D+    KIS++ EE  + + + G
Sbjct: 11  KGIGPERAKLIKNVLGLSTVE-----DMLNFYPIRYLDKSKIYKISQLQEESSQEIQLKG 65

Query: 75  YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
            I+Q    Q  K +      ND TG + L++F + ++ LK      +++ + GKI     
Sbjct: 66  KITQVQEIQTGKTKRLSAKFNDDTGSMDLVWF-QYSKWLKEQLPVNKEVYIFGKINVFNR 124

Query: 135 RIIMVHPHYIFHNSQDVN------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           +  M HP       ++ +      +P  E +     GL+   F+  +      +P L E 
Sbjct: 125 QFSMPHPEIEAEEKKEGDTRLKPIYPSSEKL--TKRGLNQRFFQNALRNICKEIPGLIEE 182

Query: 189 IEKDLLQKK-SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
              D L K   F S   AF  +H P   KD E  + A  RL ++E    Q+   L +   
Sbjct: 183 NFPDYLMKTFKFMSRQHAFLNVHFP---KDMEHFNKADYRLKFEESFFFQLGYGLKKLHH 239

Query: 248 KKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           K +  G P  + G        N +PF  T +Q+  +K+I  DM +  +M R+LQGDVGSG
Sbjct: 240 KTQSHGNPFPIIGDHFNDFYENHLPFDLTNAQKRVLKEIRMDMKRSIQMNRLLQGDVGSG 299

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VAL+ M  A++ G Q+ +MAP  ILAQQHY  IK+  + T I + ++TG+   + RR
Sbjct: 300 KTMVALLTMLIAMDNGFQSCLMAPTEILAQQHYNGIKELLEKTGINIRLLTGSTKASERR 359

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVL 424
              E + +G   I++GTHA+ +D +++  L L I+DEQHRFGV QR KL  K    PH+L
Sbjct: 360 VIHEELENGTLSILVGTHAVLEDKVKFKNLGLAIIDEQHRFGVAQRAKLWAKNKIPPHIL 419

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL ++   D+D+S I E P GRKPI T          V    K  + +G++
Sbjct: 420 IMTATPIPRTLAMSFYSDLDVSVIDEMPVGRKPIITAHRREKDRLYVYNFCKDEIKKGRQ 479

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543
            Y++ P IEE +  ++++++E    + ++F+  ++ ++HG+M   +K++ M  F +G  +
Sbjct: 480 VYFVYPLIEESETLDYKNLMEGLEHVMDYFSEYNVTMLHGKMKPDEKDAAMAYFASGKAE 539

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +++ATTVIEVG++V +AS+++IE++E FGL+QLHQLRGRVGRG E S CIL+    LSK 
Sbjct: 540 IMVATTVIEVGVNVPNASVMVIESSERFGLSQLHQLRGRVGRGAEQSYCILMTSDKLSKE 599

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           S TR+  +  T DGF I+E D++ R  G+ILG +QSG+  F         ++++  +   
Sbjct: 600 SRTRIRTMTETNDGFKISEVDMQLRGPGDILGTQQSGVVDFKRLDLINDSAIIKTTKNTV 659

Query: 664 KHILTQDPDLTSVRGQSIR 682
           + IL  DP L+    Q I+
Sbjct: 660 EKILEADPMLSRPDNQIIK 678


>gi|22537822|ref|NP_688673.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae 2603V/R]
 gi|25011766|ref|NP_736161.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae NEM316]
 gi|76788227|ref|YP_330296.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae A909]
 gi|77406424|ref|ZP_00783482.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae H36B]
 gi|77412547|ref|ZP_00788841.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae CJB111]
 gi|22534716|gb|AAN00546.1|AE014268_6 ATP-dependent DNA helicase RecG [Streptococcus agalactiae 2603V/R]
 gi|24413306|emb|CAD47385.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563284|gb|ABA45868.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae A909]
 gi|77161398|gb|EAO72415.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae CJB111]
 gi|77174957|gb|EAO77768.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae H36B]
          Length = 671

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 244/669 (36%), Positives = 375/669 (56%), Gaps = 29/669 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P+S  +G G K +    K+      +     DLL Y+P  + D   +     +  E+
Sbjct: 3   LQSPISNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 57  AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA--LSRLPV 184
           GK    K+ I  +    +    +D   P    VY +  G+S     K I  A  +S    
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEISAHLE 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E  G+PI       +  + ++PF  T +Q+ ++ +IL DMS    M R+LQGDVG
Sbjct: 224 SENKSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDEILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++   +  I   I+T  M  A 
Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR+
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARR 640

Query: 662 DAKHILTQD 670
            A  I+  +
Sbjct: 641 VASDIVKDN 649


>gi|319649610|ref|ZP_08003766.1| ATP-dependent DNA helicase RecG [Bacillus sp. 2_A_57_CT2]
 gi|317398772|gb|EFV79454.1| ATP-dependent DNA helicase RecG [Bacillus sp. 2_A_57_CT2]
          Length = 682

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 244/673 (36%), Positives = 380/673 (56%), Gaps = 32/673 (4%)

Query: 6   LNPLF-APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISE 63
           +NP +   ++  +G+G++ ++ L+++    N N  +  DLL Y P  + D  YR K + E
Sbjct: 1   MNPNYNQSVTAVKGIGEETAVSLAEM----NINTVK--DLLEYFPYRYED--YRLKDLEE 52

Query: 64  ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           I  +  VT+ G I    S     R+  ++ +    G   +         LKN       +
Sbjct: 53  IKHDERVTVEGKIHSEPSLAYYGRKRSRLTVRVLVGRYLIQVVMFNQPYLKNKITLNETV 112

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL- 182
           TVTGK  + + +II  +   I   S + +F   E VY++   ++V   ++ I  A S+  
Sbjct: 113 TVTGKWDQHR-QIITANELKIGSASSNKDF---EPVYAVKGNITVKGIRRFIKLAFSQYG 168

Query: 183 ----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
                 LPE   K LLQ +      +A   +H P  A D E     R R  Y+E    Q+
Sbjct: 169 NEISETLPE---KYLLQYRLLDR-RDAMRSLHFP--ANDQELKQ-GRRRFVYEEFFYFQL 221

Query: 239 ALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            +  +RK + ++  GI    +     + + ++PF+ T +Q+  + +IL DM    RM R+
Sbjct: 222 KMQALRKIEREQSKGIAQAYDLSRLMEFIDSLPFALTNAQKRVVNEILTDMKSPYRMNRL 281

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT VA IA+ A+  A  Q  +M P  ILA+QH E +K   +   +  E++T 
Sbjct: 282 LQGDVGSGKTAVAAIALFASRTADFQGALMVPTEILAEQHAESLKTMLEPFGLRCELLTS 341

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++    RR+ L+ +  G+  ++IGTHAL Q+ ++Y KL LVI DEQHRFGV QR  L +K
Sbjct: 342 SVKGKRRREILQHLKDGEIDVLIGTHALIQEEVEYNKLGLVITDEQHRFGVGQRRILREK 401

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             +P VL MTATPIPRTL +T  G++D+S I E PAGRK I+T       +D V+  ++ 
Sbjct: 402 GESPDVLFMTATPIPRTLAITVFGEMDVSIIDEMPAGRKAIETYWAKPEMLDRVLGFMEK 461

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMD 535
            LS G++ Y ICP IEE  + + ++ ++   +L  HF     + ++HGR+   +KE+VM 
Sbjct: 462 ELSAGQQVYVICPLIEESDKLDVQNAIDVHATLMHHFHGRYDVGLMHGRLHPDEKENVMK 521

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +F     ++L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG++ S C+LL
Sbjct: 522 AFSRNETQILVSTTVVEVGVNVPNATMMVIYDAERFGLAQLHQLRGRVGRGDKQSYCVLL 581

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-S 654
             P  S+    R+ ++  T DGF ++E+DL+ R  G+  G KQSG+P+F +A   +HD  
Sbjct: 582 ADPK-SEVGKERMKIMTETNDGFALSEKDLELRGPGDFFGKKQSGLPEFKVADM-VHDYR 639

Query: 655 LLEIARKDAKHIL 667
            LE AR DA  ++
Sbjct: 640 ALEAARNDAASLV 652


>gi|217967527|ref|YP_002353033.1| ATP-dependent DNA helicase RecG [Dictyoglomus turgidum DSM 6724]
 gi|217336626|gb|ACK42419.1| ATP-dependent DNA helicase RecG [Dictyoglomus turgidum DSM 6724]
          Length = 779

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/639 (36%), Positives = 364/639 (56%), Gaps = 26/639 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ--LQKRRPYKILLNDGTGE 100
           DL+ Y+P  + DR    KISEI     VTI   I  +   +   +K    K  ++D TG 
Sbjct: 121 DLITYYPRDYDDRSKLKKISEIKPGERVTIKVKIIDYEETKTLYKKIPIIKAKISDNTGW 180

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD---VNFPLI 156
              +++ +K   +K V   G ++ ++G+ K+L   I   +P Y      +D   +N   I
Sbjct: 181 AYAVWYGQK--YIKQVLPPGTELLISGEAKRLLKHIEFENPEYETLDEGEDKEFLNVGRI 238

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
             +YSL +GL+  + +KII +AL+   +  E    D L K     + E +N++  P    
Sbjct: 239 VPIYSLTSGLTQKVLRKIIYDALTDYSIFLE----DPLPK----YLREKYNLMDKPVSVW 290

Query: 217 D------FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNI 269
           +      F   + A +R+ ++EL   Q+ L   R++ + E+  P+ N++ ++ +K L ++
Sbjct: 291 EKHFPTSFLTMASASKRITFEELFFLQLNLAKKRREIE-ELSAPVFNIQSELVEKFLGSL 349

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  TK+QE   ++I +D+S    M R+LQGDVGSGKT++A +A   A + G Q   M P
Sbjct: 350 PFKLTKAQEKVWEEIKKDLSSGRPMHRLLQGDVGSGKTVIAALATILAYDNGYQTAFMVP 409

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY  +K   +   I + ++T + P+  +      +A G+  ++IGTHAL Q+ 
Sbjct: 410 TEILAEQHYNRLKNIFEPLGIKIALLTSSTPKKEKTYIYLDLAEGKLPVVIGTHALIQEE 469

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + + KL LVI+DEQHRFGV QR KL +K  APH+L+MTATPIPR+L L   G++DIS I 
Sbjct: 470 VTFKKLGLVIIDEQHRFGVIQRAKLWKKGEAPHLLVMTATPIPRSLALVLYGELDISIID 529

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           E P GRKP+ T +       +V   ++  + +GK+A+ +CP IEE ++    S  + +  
Sbjct: 530 ELPPGRKPVITYLFSKKERRKVYSFVEKEIEKGKQAFVVCPLIEESEKLEAESAKKLYEE 589

Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L + F   +I +IHG +   ++  +M+ F+ G  ++L+ATTVIEVG+D+ +ASI++IENA
Sbjct: 590 LKKFFPRFNIGLIHGLVPREERTRIMEEFQKGEIQILVATTVIEVGVDIPNASIMVIENA 649

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           + FGLAQLHQLRGRVGRG E S C L+      +N+  RL V+  T DGF+IA +DL+ R
Sbjct: 650 DRFGLAQLHQLRGRVGRGSEQSYCFLIADLK-GENAKERLKVMVETNDGFVIANKDLEIR 708

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
             GE  G KQ G    L         L EIAR +A  ++
Sbjct: 709 GPGEFFGTKQHGTLDVLFVDLTKDMKLFEIARNEAFEVI 747


>gi|125625276|ref|YP_001033759.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124494084|emb|CAL99085.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300072086|gb|ADJ61486.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 666

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 233/643 (36%), Positives = 363/643 (56%), Gaps = 26/643 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100
           DLL Y P  + D   R  + E+++    TI G +   ++ Q    KR      + +G   
Sbjct: 31  DLLLYFPFRYEDFASR-SVFELTDGEKATIIGTVVTPANVQYYGFKRNRLSFKIKEGEAV 89

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           + + FF +    L +    G++I V GK ++ K +++ +    +     D     +E VY
Sbjct: 90  VAVSFFNQP--YLADKVEVGKEIAVYGKWEQTKQQLMGMK---VVAQVDDG----LEPVY 140

Query: 161 SLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
            L  G+      K+I +      L  LPE + + L++K    +  EA   +H P   +D 
Sbjct: 141 HLTAGMKQSQLVKVIHQVFESGLLSELPENLPEFLIEKYRLMNRQEAVLAMHFP---EDM 197

Query: 219 EWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
                A  R+ ++EL   Q+ L  L  K+     G+ +  E +   K + ++PF  T  Q
Sbjct: 198 AAHKQALRRVKFEELFMFQLKLQALKNKEKSGRAGLQVIFEQEEIDKKISDLPFELTGGQ 257

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             A+ +IL DM     M R+LQGDVGSGKT+VA ++M AA  A  QA IM P  ILA+QH
Sbjct: 258 SRALTEILDDMKSPYHMNRLLQGDVGSGKTVVASLSMYAACLANFQAAIMVPTEILARQH 317

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           +  ++      QI   ++   +  A RR+ L  +A G  H+++GTHAL Q+ + +Y L L
Sbjct: 318 FANLQALFPELQI--SLLVSGLKAAERREILADLASGHTHMVVGTHALIQEGVDFYNLGL 375

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL+MTATPIPRTL +T+ GD+D+S I E P GR+P
Sbjct: 376 VITDEQHRFGVNQRKILREKGQNPDVLMMTATPIPRTLAITAFGDMDVSIIDELPKGRQP 435

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-- 515
           I T  +   +  EV+  +K  ++   + Y+I P IEE +  + ++    F  L+++F   
Sbjct: 436 ITTRWVKHEQFSEVLSWVKGEVANDSQVYFISPLIEESESLDLKNAEALFAELNDYFGLF 495

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I ++HG+M + +K+ +M  FK     +L++TTVIEVG+DV +A+I++I +A+ FGL+Q
Sbjct: 496 AKIGLLHGKMKNDEKDQIMQEFKAKKLDVLVSTTVIEVGVDVPNATIMVIMDADRFGLSQ 555

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG + S  IL+ +P  S +   R+ ++  T++GF++AEEDLK R  GEI G
Sbjct: 556 LHQLRGRVGRGTKKSYAILVANPK-SDSGKQRMKIMTETQNGFVLAEEDLKMRGSGEIFG 614

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD---PDLTS 675
           ++QSG+P+F+ A      ++LE+AR++A  I  +    PDL +
Sbjct: 615 LRQSGLPEFIAADLVNDYNILEVARQEAVEIFKKADEFPDLIA 657


>gi|289432949|ref|YP_003462822.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. GT]
 gi|288946669|gb|ADC74366.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. GT]
          Length = 818

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 226/657 (34%), Positives = 366/657 (55%), Gaps = 33/657 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL+Y P+  +D     KIS++      TI   + Q     +  RR  + +L D TG + 
Sbjct: 148 DLLYYFPNRHLDYSRLKKISQLEAGPEQTIIANVWQSKVNFMGGRRSTEAVLGDDTGNMR 207

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVY 160
            ++F     M++N+    R + ++G++   + R +   P +  +   +  ++   +  VY
Sbjct: 208 AVWF-NNPYMVRNLKPNAR-VVLSGRVSIFQGRPVFESPEWEELPDEADLIHTGRLVPVY 265

Query: 161 SLPTGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
            L  GL     ++++   +    P + +++  + L++     ++EA    H P    D E
Sbjct: 266 PLTAGLHQRSLRRLMKNFIDISSPNISDFMPAETLKRTRLLPLSEAIRQAHFP---DDEE 322

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
             + AR RLA+DEL   Q+ +L  +K++ ++ G  +NV      + +  +PF  T +Q  
Sbjct: 323 LKNAARNRLAFDELFILQLGVLAKKKRWHEQAGRALNVNIPDIDRFVSKLPFKLTDAQTR 382

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            + DI  D+S+   M R+LQG+VGSGKT+VA+I++  A   G Q   MAP  ILA+QH++
Sbjct: 383 CLADIKADISKGVPMSRLLQGEVGSGKTIVAVISLFTAAANGLQGAFMAPTEILAEQHFK 442

Query: 340 FIKK---------------YT----QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            + +               YT     +  + V ++  +M  + +    E+I  G+  I I
Sbjct: 443 SVTRLFASIARVSTLLDGIYTFEGLLDRPLKVALLISDMKGSQKDILKEKIKKGEVDIAI 502

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTHAL Q  I++  L L ++DEQHRFGV+QR  L  K   PH+L+MTATPIPRTL LT  
Sbjct: 503 GTHALIQKEIRFKSLGLAVIDEQHRFGVEQRSALRSKGLNPHILIMTATPIPRTLALTLY 562

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           GD+D+S I E P GR+ IKT  +   + +     ++  + EG++A+ ICP +EE +    
Sbjct: 563 GDLDLSVIDELPPGRQSIKTRWLKPEQRNSAYTFIRKQIQEGRQAFIICPLVEESEVIQA 622

Query: 501 RSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           ++    + +L       S +A++HGRM+  +KE++M  F  G   +L++T VIEVGID+ 
Sbjct: 623 KAATAEYETLSREVFPESRVALLHGRMNASEKETIMRHFSEGEMDILVSTPVIEVGIDIP 682

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A+++++E+A+ FGL+QLHQ RGRVGRG E S C+ L   P S     RLS++++T+DGF
Sbjct: 683 NAAVMLVESADRFGLSQLHQFRGRVGRGTEQSYCMFLAENP-SLLGQERLSIIESTQDGF 741

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLT 674
            +AEEDL+ R  GE  G +QSG+P   +A   + D  LLE ARK+A  +   DP+L+
Sbjct: 742 KLAEEDLRLRGPGEFFGTRQSGLPNLRMAS--ISDVGLLEQARKEATRLFESDPELS 796


>gi|323340718|ref|ZP_08080970.1| DNA helicase RecG [Lactobacillus ruminis ATCC 25644]
 gi|323091841|gb|EFZ34461.1| DNA helicase RecG [Lactobacillus ruminis ATCC 25644]
          Length = 680

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/668 (35%), Positives = 375/668 (56%), Gaps = 37/668 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   G+G K  L L  +       ET   DLL Y+P  + D   + ++SE+++ +   I
Sbjct: 8   VSNLSGIGPKKELALKAL-----GIET-IEDLLCYYPFRYEDMATK-EVSELADGQKAVI 60

Query: 73  TGYISQHSSF----QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            G ++         + + R  +K+L   G   I + FF +    LK+    G  + V GK
Sbjct: 61  QGVVATAPVVVRFGRAKNRLNFKLLA--GHDVIQITFFGQA--YLKDRVQPGSDVAVYGK 116

Query: 129 IKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVL 185
               +  +  +    +F N  SQ+     I  +Y     +     K+++ +A      V+
Sbjct: 117 YDTARQSMTGMK---LFSNGGSQED----IAGIYRASKEIKAQTIKQLVKKAYEEYQDVI 169

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E + +   +K    +  E  + +H P+  ++FE    AR    +DE    +  L L++K
Sbjct: 170 EEIVPESTRRKFRLLNRKEMIHDMHFPKTTQEFEI---ARRSAIFDEFFKYEARLALLKK 226

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             + + G+ I  +  + ++ +  +PF  T +Q+  + +I +DM +   M R+LQGDVGSG
Sbjct: 227 LDRNDAGLLIKYDNSMVKRFISALPFELTNAQKRVVNEICKDMHRPLHMNRLLQGDVGSG 286

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT++A IAM AAV AG QA +MAP  ILAQQH + +    Q+  + V ++TG      + 
Sbjct: 287 KTVIAAIAMYAAVTAGFQAALMAPTEILAQQHAKKLSDLFQDFGVSVCLLTGTEASKTKV 346

Query: 366 K--ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           K   LER+A+ +  I++GTHAL QD + + KL LV+ DEQHRFGV QR  L +K   P V
Sbjct: 347 KHDILERLANKEIDILVGTHALIQDPVIFKKLGLVVTDEQHRFGVNQRKALREKGENPDV 406

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E P GRKPI+T  +  N+++  ++ L+  L +G 
Sbjct: 407 LAMTATPIPRTLAITTYGEMDVSVINELPKGRKPIRTSWVKQNQMNATLDFLERQLKDGS 466

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
           +AY + P IEE +  + ++  E F  L + +     + ++HGRM   +K+ +M  FK G 
Sbjct: 467 QAYVVSPLIEESEAVDLKNAQEVFEKLEKRYAPCYKVGLLHGRMKSDEKDEIMKDFKEGK 526

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTV+EVG+DV +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL   P   
Sbjct: 527 YDILVSTTVVEVGVDVPNATVMVILDADRFGLAQLHQLRGRVGRGSKASYCILCADP--- 583

Query: 602 KNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           K  Y   R+  +  T DGF+I+++DL+ R  GE+LG +QSG+P F I  P  + + L+ A
Sbjct: 584 KTDYGKERMQTMVETTDGFVISQKDLELRGPGEVLGSRQSGLPDFRIGDPVANFNTLQAA 643

Query: 660 RKDAKHIL 667
            ++A+ I+
Sbjct: 644 MEEARAII 651


>gi|259047424|ref|ZP_05737825.1| ATP-dependent DNA helicase RecG [Granulicatella adiacens ATCC
           49175]
 gi|259035615|gb|EEW36870.1| ATP-dependent DNA helicase RecG [Granulicatella adiacens ATCC
           49175]
          Length = 683

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 237/676 (35%), Positives = 375/676 (55%), Gaps = 26/676 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +N +F  +    GVG K    L+++       ET + DLL + P  + D   R  ++ I 
Sbjct: 1   MNEVFQSVQVLPGVGPKRLEPLAEL-----GIETVY-DLLTHFPFRYEDIQIR-DVNTIM 53

Query: 66  EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           ++  VT+ G ++     S +  +K R  +++ ++     I + FF +    LK+   +G 
Sbjct: 54  DQEKVTLKGLVATQPVVSYYGFKKNRLAFRMAIDQQV--IQVAFFNQP--YLKDKVVQGE 109

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +I + GK    K   +M        N +D     +EAVY     L      K++  A+ R
Sbjct: 110 EIAIYGKWDA-KRSTLMGMKILSNRNVEDEEGDQVEAVYRTNKSLKQATILKLVQTAMDR 168

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
               +PE +  +L          +A   +H P   KD      A+ +L Y EL   Q+ L
Sbjct: 169 FEDKIPEVLPGELTASHHLMGHRDAVRAMHFP---KDELERQSAQYQLVYQELFLYQLRL 225

Query: 241 LLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             MR K+ ++  G  +  +    +  ++ +PF  T  Q+  + +I  D+     M R+LQ
Sbjct: 226 QWMRQKRHQQTKGQAVLYDNAALKAFIQTLPFELTDGQKKVVNEICFDLRAPYEMNRLLQ 285

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA IAM A    G QA +M P  ILA+QH   I+K  Q T +   ++TG+M
Sbjct: 286 GDVGSGKTIVATIAMVATALTGKQAALMVPTEILAEQHMLTIEKLLQGTSLKAVLLTGSM 345

Query: 360 --PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
              Q  R++ L  I  G+A+++IGTHALFQ  + +  L  V++DEQHRFGVQQR  L  K
Sbjct: 346 NRSQKKRKELLATIESGEANLVIGTHALFQQDVNFKDLAFVVIDEQHRFGVQQRQALAGK 405

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
               +VL MTATPIPRTL +T+ G++D S + E P GR+PIKT  +    ++++ + +  
Sbjct: 406 GAGVNVLQMTATPIPRTLAITAFGEMDTSILGEIPRGRQPIKTTWVREQEMEQIFDFVDR 465

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMD 535
            + +G++AY I P IEE +  + ++  E +  +  HF+    + ++HG+M   +KE VM 
Sbjct: 466 QIQKGRQAYMISPLIEESEHLDVQNAEEIYRMISAHFSDRVKVGLLHGKMPADEKEVVMA 525

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK    ++L++TTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGRG+  S+CIL+
Sbjct: 526 DFKANNLQVLVSTTVIEVGVDVPNATVMVILDADRFGLAQLHQLRGRVGRGQHASTCILV 585

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             P  ++N   R+ ++  + DGF ++++DL+ R  G++ G+KQSG+P F IA       +
Sbjct: 586 ASPK-TENGKERMRIMCESTDGFYLSQKDLELRGSGDVFGVKQSGIPDFKIADLIRDYDI 644

Query: 656 LEIARKDAKHILTQDP 671
           LE ARKDA    ++DP
Sbjct: 645 LEQARKDAILYASEDP 660


>gi|254882342|ref|ZP_05255052.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 4_3_47FAA]
 gi|319640606|ref|ZP_07995325.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_40A]
 gi|254835135|gb|EET15444.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 4_3_47FAA]
 gi|317387776|gb|EFV68636.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_40A]
          Length = 698

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 245/668 (36%), Positives = 381/668 (57%), Gaps = 21/668 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74
            +GVG + +  L+K +N  + +     DLL+Y P  ++DR     I EI      + + G
Sbjct: 12  LQGVGPQRATVLNKELNLFSLH-----DLLYYFPYKYVDRSRLYYIHEIDGNMPYIQLKG 66

Query: 75  YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
            I    +    ++R      +DGTG I L++F     +L++ +    +  V GK      
Sbjct: 67  EILSFETLGEGRQRRLVGHFSDGTGIIDLVWFQGIKYLLEH-YKTRTEYIVFGKPTVFNG 125

Query: 135 RIIMVHPHYIFHNSQDVNFPLIEAVYS----LPTG-LSVDLFKKIIVEALSRL-PVLPEW 188
           RI + HP         ++   ++  Y+    +  G L+    +K++  AL+ L   L E 
Sbjct: 126 RINVAHPDMDPSGELTLSTMGLQPYYNTTERMKRGFLNSHGLEKLMKNALALLQEPLAET 185

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   L+++    S+ EA   IH P   K+ E    A+ RL ++EL   Q+ +L   K  +
Sbjct: 186 LPPRLVEEHHLMSLDEAIRNIHFP---KNPELLRKAQYRLKFEELFYVQLNILRYSKDRQ 242

Query: 249 KEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           ++  G+     G+I      +N+PF  T +Q+  IK+I +DM    +M R+LQGDVGSGK
Sbjct: 243 RKYRGLRFERVGEIFNTFYSQNLPFELTGAQKRVIKEIRKDMGSGRQMNRLLQGDVGSGK 302

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVAL++M  A++ G QA +MAP  ILA QHYE I+K+     + VE++ G++    R K
Sbjct: 303 TLVALMSMLIALDNGYQACMMAPTEILAAQHYETIRKFLFGMDVRVELLMGSVKGKKREK 362

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLL 425
            L+ +  G   I+IGTHA+ +D++ +  L +VI+DEQHRFGV QR KL  K    PHVL+
Sbjct: 363 ILKDLLTGDVQILIGTHAVLEDTVGFSSLGMVIIDEQHRFGVAQRAKLWSKNVCPPHVLV 422

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    NR   +   ++  + EG++ 
Sbjct: 423 MTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRRASLYASIRKQIEEGRQI 482

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           Y + P I+E ++ + +++ E +  +   F    ++ +HG+M   +K++ M  F +G  ++
Sbjct: 483 YIVYPLIKESEKMDIKNLEEGYELICAEFPDCQVSKVHGKMKPAEKDAEMQRFVSGETQI 542

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           ++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL+    L++ +
Sbjct: 543 MVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLTEET 602

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDA 663
             RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R  A
Sbjct: 603 RKRLEIMVQTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQYVRDVA 662

Query: 664 KHILTQDP 671
             I+ +DP
Sbjct: 663 NRIVDEDP 670


>gi|258511312|ref|YP_003184746.1| ATP-dependent DNA helicase RecG [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478038|gb|ACV58357.1| ATP-dependent DNA helicase RecG [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 678

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 227/636 (35%), Positives = 352/636 (55%), Gaps = 23/636 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN----DGT 98
           DLL  +P  + +R  +P  SE  +   VT    +      Q++ R    I+      DG 
Sbjct: 32  DLLHTYPFRYDERAEKP-FSEWRDGDRVTARAVV--EGPVQVRWRGSKSIMTARVRVDGQ 88

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             +  L+F      L++   +GR I VTGK  +   R++     +          P +  
Sbjct: 89  HPVVCLWF--SQHYLRSKLSDGRFIVVTGKWNEALRRLVASETSF----DAGTQAPSLVP 142

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VY     LS     ++I++AL +    + E +   L++K    +  +A   +H P+  +D
Sbjct: 143 VYRASKELSTKAIHQLILKALEQYAEEIQESLPYALVRKYRLWTHRDALFGMHRPKSLED 202

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI--PINVEGKIAQKILRNIPFSPTK 275
                 AR RL ++E L  QI L  +R + ++  G   P+  +   A + L  +P   T 
Sbjct: 203 ---VRQARRRLVFEEFLLFQIQLQWLRAKREEPAGRAQPVPSDALTAFEAL--LPGPMTN 257

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q  A +DIL+D+ +   M R++QGDVGSGKT VAL A  A   A GQ+ +MAP  ILA+
Sbjct: 258 AQRRACEDILRDLQRPVPMTRLIQGDVGSGKTWVALFACFAVHLARGQSALMAPTEILAE 317

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QH     +   +  + VE++TG++    R + L  +A G   + +GTHAL  + +++  L
Sbjct: 318 QHARLAHELLGSAGVRVELLTGSVTGRERDRVLAGLASGDVSLAVGTHALLSEGVEFRDL 377

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L++ DEQHRFGV QR +L +K  AP VL+++ATPIPRTL L   GD+D+S + E P GR
Sbjct: 378 ALLVTDEQHRFGVAQRARLREKGRAPDVLMLSATPIPRTLALAIYGDMDVSILNELPKGR 437

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           KP++T+ +P    + V+  ++  L+ G +AY + P IE  +  +  SV E +  + EH  
Sbjct: 438 KPVQTIAVPSKDDETVLRLIRRELARGHQAYIVAPAIEASERDDVASVTELYERVREHLA 497

Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              + ++HGRM   DKE +M +F++G    L+ATTVIEVGIDV +A+++ I  AE FGLA
Sbjct: 498 GFRVELLHGRMPSADKERMMRAFRDGDIHALVATTVIEVGIDVPNATVMAIYGAERFGLA 557

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG   S C+L+ H   S+ +  R+  +  T DGF IAE DL+ R  GE+ 
Sbjct: 558 QLHQLRGRVGRGPHPSYCLLI-HDASSEAARARIETMLQTNDGFEIAERDLELRGPGELF 616

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           G++QSG+P+F +        ++E+AR++A  +L +D
Sbjct: 617 GLRQSGLPEFALGDLARDYRIMEVAREEALALLRRD 652


>gi|224025353|ref|ZP_03643719.1| hypothetical protein BACCOPRO_02092 [Bacteroides coprophilus DSM
           18228]
 gi|224018589|gb|EEF76587.1| hypothetical protein BACCOPRO_02092 [Bacteroides coprophilus DSM
           18228]
          Length = 699

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 238/670 (35%), Positives = 374/670 (55%), Gaps = 22/670 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74
            +GVG + +  LSK +N  +     F DLL+Y P  ++DR     I EI      + + G
Sbjct: 12  LQGVGPQRADILSKELNIRS-----FKDLLYYFPYKYVDRSRLYYIHEIDGNMPYIQLRG 66

Query: 75  YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
            +    +    ++R      +DGTG + L++F +  + +   +    +  V GK      
Sbjct: 67  KVLSFETVGEGRQRRLVGHFSDGTGVVDLVWF-QGLKFVMGKYKANEEYIVFGKPTVFNG 125

Query: 135 RIIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRL--PVLPE 187
           RI + HP         ++   ++  Y+       T L+    +K++    + L    L E
Sbjct: 126 RINIAHPDIDPAAELTLSAMGLQPYYNTTERMKRTNLTSHALEKLMKNLFTALQHECLDE 185

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +   L++     S+ +A   IH PR     +    A+ RL ++EL   Q+ +L   K+ 
Sbjct: 186 TLSPSLIEAHHLMSLTDALYNIHFPRNP---DLLRKAQYRLKFEELFYIQLNILRYTKER 242

Query: 248 KKEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + +  G+     G+I      +N+PF  T +Q+  I+++ +DM    +M R+LQGDVGSG
Sbjct: 243 RNKFRGLVFGRVGEIFNTFYAQNLPFQLTGAQKRVIREMRRDMGSGRQMNRLLQGDVGSG 302

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KTLVAL+ M  A++ G QA +MAP  ILA QHYE I ++ +   + VE++TG +    R 
Sbjct: 303 KTLVALMTMLIALDNGFQACMMAPTEILAVQHYETINRFLEGMNVRVELLTGTVKGKKRE 362

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVL 424
             L  +  G   I+IGTHA+ +D++ +  L LV++DEQHRFGV QR KL  K T  PHVL
Sbjct: 363 AILSGLLTGDVQILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRAKLWAKNTCPPHVL 422

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL +T  GD+D+S I E P GRKPI+TV    NR   +   L+  + EG++
Sbjct: 423 VMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTVHQFDNRRPSMYAFLRKQIQEGRQ 482

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543
            Y + P I+E ++ + +++ + +  + E F    ++ +HG+M   +KE  M  F     +
Sbjct: 483 VYIVYPLIQESEKMDIKNLEDGYLHICEEFPEYKVSKVHGKMKPAEKEEEMQRFLRNETQ 542

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S C+L+    L++ 
Sbjct: 543 IMVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCVLVTGYKLTEE 602

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKD 662
           +  R+ ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R+ 
Sbjct: 603 TRKRIEIMVQTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQYVREI 662

Query: 663 AKHILTQDPD 672
           A+ +L +DP+
Sbjct: 663 AERLLEEDPE 672


>gi|228470578|ref|ZP_04055435.1| ATP-dependent DNA helicase RecG [Porphyromonas uenonis 60-3]
 gi|228307705|gb|EEK16681.1| ATP-dependent DNA helicase RecG [Porphyromonas uenonis 60-3]
          Length = 697

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/696 (33%), Positives = 383/696 (55%), Gaps = 35/696 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH-------YRPKI 61
           L  PL+   G+G K +  +++ ++        + DLL++ P  + DR          P +
Sbjct: 4   LTTPLADLPGLGTKRAQLIAEELDLHT-----YRDLLYHIPYRYADRRVIYPIGSLMPSM 58

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           SE      V + G +   S+  L ++      L D TGE+ LL +++  + ++     G 
Sbjct: 59  SE------VQVEGILQPFSAPSLGRKSNLSARLMDDTGEL-LLVWFKGQDYIQRSLTPGC 111

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS---VD-LFKKIIVE 177
           K  V GK++   N++ + HP     +  + +    + +Y +   L    +D  F    ++
Sbjct: 112 KYIVYGKLQLFNNQLQITHPEIKLADKPNPSVGGYQPIYRITERLKRSRIDSAFLGRYID 171

Query: 178 ALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
            L + P   +PE + + L+  +    +  A   IH+P   +  E    A+ RL YDEL  
Sbjct: 172 QLLQSPYFSIPETLSEPLIAHRHLVPLQTAIRWIHHP---QSVEQAQVAKFRLKYDELFY 228

Query: 236 GQIAL--LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             + L  L + ++ + E G  ++  G +   +   +P+  T +Q+  +++I +D +   +
Sbjct: 229 LNLYLRRLAVMQRMRYE-GYRLDQVGPLFNSLYHALPYDLTGAQKRVLREIRRDTNSGAQ 287

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKTLVAL AM  AV+ G QA ++AP  ILAQQHYE I ++ +   + + 
Sbjct: 288 MNRLLQGDVGSGKTLVALFAMLLAVDNGYQACMLAPTEILAQQHYETISEFVEGLDVSIA 347

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+     RR+ L  +A G   I+IGTHA+ ++ + + KL + ++DEQHRFGV QR K
Sbjct: 348 LLTGSSKTRERRETLSALADGSLSILIGTHAILEERVAFRKLGMAVIDEQHRFGVAQRSK 407

Query: 414 LTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           L  K   T PH+L+M+ATPIPRTL +T  GD+++S I E P GRKPI TV I   + + +
Sbjct: 408 LWGKNVLTLPHILVMSATPIPRTLAMTMYGDLEVSVIDEMPPGRKPITTVQIAEKKKETL 467

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDK 530
              +   ++ G++ Y + P IE  +ES+F ++   +    E F    +  +HGR+S  DK
Sbjct: 468 YSLINETINRGQQIYVVFPMIEGTEESDFANLEVGYKEYVERFGEERVVYVHGRLSAEDK 527

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
              M+ F +G   +L+ATTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S
Sbjct: 528 AEQMERFASGEVPILLATTVIEVGVNVPNATVMVINDAQRFGLAQLHQLRGRVGRGGDKS 587

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQP 649
            C+L+    L  ++  R+  +  T+DGF IAEED++ R  G++ G +QSG +    IA P
Sbjct: 588 YCLLVTPDDLQGDAKQRIDTMVATQDGFKIAEEDMRLRGFGQMEGTRQSGTLAGISIADP 647

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
               +LL + R D  ++L   P L     +  RI L
Sbjct: 648 VADYNLLALTRLDVNYLLDYSPLLDKPDTELYRINL 683


>gi|229006131|ref|ZP_04163819.1| ATP-dependent DNA helicase recG [Bacillus mycoides Rock1-4]
 gi|228755207|gb|EEM04564.1| ATP-dependent DNA helicase recG [Bacillus mycoides Rock1-4]
          Length = 685

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 232/681 (34%), Positives = 387/681 (56%), Gaps = 25/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G++ S  L ++     ++      LL + P  + D +    ++E+  E  VT
Sbjct: 11  PVTDVKGIGEETSELLHEMGIHTVSH------LLEHFPYRYED-YAMKDLAEVKHEERVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K    E   +T+TGK 
Sbjct: 64  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TVTITGKW 121

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 122 DQHRQTISISELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGSSIEEM 177

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   LL +       EA   +H P   +D +    AR R  Y+E    Q+ +  +RK  +
Sbjct: 178 LPDGLLGRYKLLPRYEALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQALRKMER 234

Query: 249 KEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G   ++  K  ++    +PF  T +Q   + +I++DM    RM R+LQGDVGSGKT
Sbjct: 235 ESSKGTKKDISMKELEEFTDALPFPLTGAQRRVVSEIIKDMQSPYRMNRLLQGDVGSGKT 294

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IA+ AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR+ 
Sbjct: 295 VVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFNMNVELLTSSVKGARRREV 354

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 355 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 414

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + ++ V+  ++  +++G++AY 
Sbjct: 415 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLERVLGFVEKEVNKGRQAYV 474

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE VM+ F     ++L
Sbjct: 475 ICPLIEESEKLDVQNAIDLHSMLIHHYQGKFQVGLMHGRLSSQEKEDVMEKFSENKVQIL 534

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 535 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 593

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR+DA 
Sbjct: 594 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETARQDAA 652

Query: 665 HILTQDPDLTSVRGQSIRILL 685
            ++  +    + +  ++R+ L
Sbjct: 653 VLVDSEAFWHNEQYAALRVYL 673


>gi|319939812|ref|ZP_08014168.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus 1_2_62CV]
 gi|319811025|gb|EFW07340.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus 1_2_62CV]
          Length = 671

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/669 (35%), Positives = 378/669 (56%), Gaps = 26/669 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D   +  + E+ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFTKL------GIESLQDLLLYFPFRYEDFKSK-NVIELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++       E+ L   +     L +    G  I + GK
Sbjct: 56  KAVVSGVVVTPANVQYYGYKRNRLRFTIKQDEVVLAINFFNQPYLADKVEVGSTIAIFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    I    +D     ++ VY +  G+S     K+I  A  +    +L 
Sbjct: 116 WDKAKASLTGMK---ILAQVEDD----LQPVYRVVQGISQASLVKVIKTAFDQGLELLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++       +A   +H P+   +++    A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQVLLERYQLLGRNQAVRAMHFPKNLTEYK---QALRRIKFEELFYFQMQLQVLKHE 225

Query: 247 FKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K    G+ I  +  + +K    +PF  T +QE ++ +ILQDM     M R+LQGDVGSG
Sbjct: 226 TKDASQGLIIPWQADLLEKKKATLPFELTAAQERSLNEILQDMKSPAHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     +II  ++TG M  A RR
Sbjct: 286 KTVVAGLAMYATYTAGLQSALMVPTEILAEQHFDSLSQLFPELRII--LLTGGMKPAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           +ALE I  GQ  +I+GTHAL Q+ + Y++L LVI+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 QALEAIEAGQVDMIVGTHALIQEGVTYHRLGLVIIDEQHRFGVGQRRILREKGNNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ L+  L  G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIINQMPAGRKPIITRWVKHEQLEIVLDWLRKELQRGAQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  +F   + +A++HG+M   +K+++M  FK G   
Sbjct: 464 YVISPLIEESEVLDLKNAIALEEELKAYFGDKTHVALLHGKMKSDEKDAIMQDFKEGKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMLIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILTQDPD 672
             I++  PD
Sbjct: 643 SQIVST-PD 650


>gi|120609293|ref|YP_968971.1| ATP-dependent DNA helicase RecG [Acidovorax citrulli AAC00-1]
 gi|120587757|gb|ABM31197.1| ATP-dependent DNA helicase RecG [Acidovorax citrulli AAC00-1]
          Length = 708

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 231/676 (34%), Positives = 362/676 (53%), Gaps = 49/676 (7%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           +R IDL  + P  + D      +  + +     I   ++  S  QL+ RR   + ++DGT
Sbjct: 19  SRDIDLALHLPLRYEDETRITPLRNVRDGDTAQIEATVTA-SEVQLRPRRQLVVTVDDGT 77

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IE 157
           G   L FF       K +   G ++ + G++K       M+HP +     +    P  + 
Sbjct: 78  GTCELRFFSFYPSHQKTLAV-GARLRIRGEVKGGFWGRQMLHPAFRLAGGE---LPAALT 133

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQ-------KKSFPSIAEAFN 207
            VY    GL     ++ IV AL R+ +   +P  +E  + +        +S+ ++ +A  
Sbjct: 134 PVYPTTAGLPQPYLRRAIVSALQRVDLSETIPPGLEPPIPRFLGEGGGGRSWWTLRDALV 193

Query: 208 IIHNPRK----AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-----NVE 258
            +H+P      A   + + PA +RL  +ELLA Q++ L  +++ +  +  P+       E
Sbjct: 194 FLHHPTPDVALATLEDHSHPAWQRLKAEELLAQQLSQLEAKRE-RDRLRAPVLRPAPGGE 252

Query: 259 GKIA--QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           G  A  +++L  +PF  T +Q     +I  D+++   M R+LQGDVGSGKT+VA ++ A 
Sbjct: 253 GGAALHERLLAALPFGLTAAQRRVCAEIAADLARAVPMHRLLQGDVGSGKTVVAALSAAV 312

Query: 317 AVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            ++AG Q  +MAP  ILA+QH+     +++     +   V  + G   +  R   L  + 
Sbjct: 313 CMDAGWQCALMAPTEILAEQHFRKLIGWLEPLLAASGRRVAWLAGGQKKKERAAMLALVE 372

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL----KLTQKATAPHVLLMTA 428
            G+A +++GTHA+ Q+ +++  L L ++DEQHRFGV QRL    KL  +   PH+L+M+A
Sbjct: 373 SGEAALVVGTHAVIQEQVRFRNLALAVIDEQHRFGVAQRLALRRKLADQGMEPHLLMMSA 432

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL ++   D+D+S I E P GR PI T +I  +R DEVIER+   ++ G++ YW+
Sbjct: 433 TPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVIERIGAQVASGRQVYWV 492

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS---------IAIIHGRMSDIDKESVMDSFKN 539
           CP IEE +  +  +       L E              + ++H RM   +K++VM+ F  
Sbjct: 493 CPLIEESEALDLSNATATHLELSEALQGDPAHGQAPVMVGLLHSRMPPAEKKAVMELFTA 552

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GT  +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY   
Sbjct: 553 GTMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSAASACVLLYSTG 612

Query: 600 ----LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
               L + +  RL  +  T+DGF IA  DL+ R  GE LG +QSG P    A       L
Sbjct: 613 ESGRLGETARDRLRAMAETQDGFEIARRDLEIRGPGEFLGARQSGAPMLRFADLATDTLL 672

Query: 656 LEIARKDAKHILTQDP 671
           LE AR+ A  +L   P
Sbjct: 673 LEWARETAPRMLDGHP 688


>gi|326335996|ref|ZP_08202172.1| DNA helicase RecG [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691793|gb|EGD33756.1| DNA helicase RecG [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 700

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 245/685 (35%), Positives = 375/685 (54%), Gaps = 30/685 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   RGVG + +  L   +   N     + DLL   P+ +IDR    KI ++ +  
Sbjct: 4   LETPIEHLRGVGTQRATLLKNELQVAN-----YQDLLHLFPTRYIDRTQYYKIQDLRDSS 58

Query: 69  I-VTITGYISQHSSFQLQKRRPYKIL--LNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
             V I G I    +   + +R  +++    DGT  + L++F+  ++ LK+         +
Sbjct: 59  AEVQIIGRIIHLKTVTGKNKRQQRLVATFTDGTASMELIWFH-PSQWLKDHLLLNVPYVI 117

Query: 126 TGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-- 182
            G+         MVHP        Q+     I+AVY     L+    + I    + RL  
Sbjct: 118 FGRCSLFAGTFSMVHPEMETLEEHQNTLQGNIQAVYPSTEKLTK---RGITQRVMRRLFE 174

Query: 183 -------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
                      E +  ++LQ        EA   IH P+     +  + A+ RL  +EL  
Sbjct: 175 TLFHEVGKDFQETLPNEMLQPLRLLPKGEALFQIHFPQSQ---DLLAKAQFRLKLEELFY 231

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRM 294
            Q+ L+      KK  G      G        + +PF  T++Q+  IK+I  DM+   +M
Sbjct: 232 IQLQLIQKNYLNKKLKGFLFPKVGDYFNTFYYQYLPFPLTEAQKRVIKEIRNDMATGAQM 291

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVG+GKT+VAL AM  A++   QA +MAP  ILAQQH++ I     +T + + +
Sbjct: 292 NRLLQGDVGAGKTIVALFAMLLALDNHYQACLMAPTEILAQQHFQGISSLLAHTNVHIAL 351

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+     R    + + +GQ  I+IGTHAL +D ++++ L L I+DEQHRFGV+QR KL
Sbjct: 352 LTGSTKTKERHLIHQSLENGQLQIVIGTHALLEDKVRFHNLGLAIIDEQHRFGVEQRSKL 411

Query: 415 TQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             K    PHVL+M+ATPIPRTL ++  GD+DIS I E P GRKPIKT+        ++ +
Sbjct: 412 WHKNELPPHVLIMSATPIPRTLAMSLYGDLDISVIDELPPGRKPIKTIHQYDTHRGKIYQ 471

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDK 530
            L   +++G++ Y + P IEE +  +F+++ E +  L   F +   +IA++HG++   +K
Sbjct: 472 FLHDEITKGRQIYVVYPLIEESEALSFKNLTEGYQQLCSAFPAPEYTIAMVHGQLKPEEK 531

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E+ M  F+ G  ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S
Sbjct: 532 EAQMQLFQEGKAQIMVATTVIEVGVNVPNASVMLIESAERFGLSQLHQLRGRVGRGAEQS 591

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            CIL+    LS +S TR+  +  T DGF IAE DLK R  G+++G +QSG+    IA   
Sbjct: 592 YCILMTDVKLSHDSRTRMETMVATNDGFQIAEVDLKLRGPGDLMGKQQSGVLALKIADLV 651

Query: 651 LHDSLLEIARKDAKHILTQDPDLTS 675
              +LL++AR  A  ++  DP+LT 
Sbjct: 652 KDGALLKVARDYATDLIHIDPELTD 676


>gi|218265097|ref|ZP_03478685.1| hypothetical protein PRABACTJOHN_04395 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221586|gb|EEC94236.1| hypothetical protein PRABACTJOHN_04395 [Parabacteroides johnsonii
           DSM 18315]
          Length = 698

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 248/686 (36%), Positives = 381/686 (55%), Gaps = 53/686 (7%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG K +  L K      A  + + DLLFY P  +IDR    K++E++ +   + + G I
Sbjct: 14  GVGPKKAEILQK-----EAGISSYEDLLFYFPYKYIDRSRFYKVAEVTGDMPYIQLKGRI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    + R       DGTG I L++F +    + +    G    V GK  +  +  
Sbjct: 69  LFFDTVGEGRTRRLIGKFTDGTGTIDLVWF-KGINYVMDKIKTGVDYIVFGKPTEFGHIY 127

Query: 137 IMVHPHYI--------------FHNSQD------VNFPLIEAV-YSLPTGLSVDLFKKII 175
            + HP                 F+N+ +      +N   ++ + Y+L +GL+  L + + 
Sbjct: 128 NIPHPDIDTLDQADKVANGLTPFYNTSEKMKKSFLNSRAVQNLQYTLLSGLNWTLPETLP 187

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
              L+R+ ++P            FP   EA   +H P           A+ RL +DEL  
Sbjct: 188 PAVLNRIRMMP------------FP---EAIRNVHFPESVDKLR---KAQLRLKFDELFF 229

Query: 236 GQIALLL---MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
            Q+ +L    +RK   K I  P +V           +PF  T +Q+  +++I  DM    
Sbjct: 230 IQLNILRSSNLRKLKLKGIVFP-SVGDYFNTFYKEYLPFELTNAQKRVVREIRADMGSGR 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +M R+LQGDVGSGKTLVAL++M  AV+   QA +MAP  ILA QHY  +  + ++  I V
Sbjct: 289 QMNRLLQGDVGSGKTLVALLSMLLAVDNHCQACMMAPTEILATQHYATVMGFLKDMDIKV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+  +  R K L  IA G+  I+IGTHAL ++++ +  L L I+DEQHRFGV+QR 
Sbjct: 349 ALLTGSTKKKERNKILPAIASGEIQIVIGTHALIEETVVFSSLGLAIIDEQHRFGVEQRS 408

Query: 413 KL-TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           +L T+ +  PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+TV    N+  ++
Sbjct: 409 RLWTKNSIVPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTVHRYDNKKAQL 468

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
            + L+  + +G++ Y + P IE  ++ +++++ E F +  E F    + ++HG+M   DK
Sbjct: 469 YDFLRKEIGQGRQVYVVYPLIEGSEKLDYKNLEEGFETFKEVFPEYKVCMVHGKMKAADK 528

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E+ M  F +G  ++L+ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S
Sbjct: 529 EAEMQKFISGEAQILMATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQS 588

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQP 649
            C+L+    LS  +  RL ++ ++ +GF IAE DL+ R  G++ G +QSG    L IA  
Sbjct: 589 YCVLVSSYKLSNETRKRLEIMVSSNNGFEIAEADLRLRGHGDLEGTRQSGEGIDLKIANL 648

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTS 675
                +L+ AR  A+ +L +DPDL S
Sbjct: 649 AADGQILQYARDIAQEVLNEDPDLLS 674


>gi|260062801|ref|YP_003195881.1| ATP-dependent DNA helicase RecG [Robiginitalea biformata HTCC2501]
 gi|88784369|gb|EAR15539.1| ATP-dependent DNA helicase RecG [Robiginitalea biformata HTCC2501]
          Length = 701

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 244/709 (34%), Positives = 381/709 (53%), Gaps = 38/709 (5%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           +P   PL+  +GVG   +  L   +         F DLL++ P+ +ID+    KI E+  
Sbjct: 4   DPRNTPLAYLKGVGPGRARLLESELGLKT-----FRDLLYFFPNRYIDKSRYYKIRELER 58

Query: 67  ERI-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               V + G I    + + ++ +       D TGE+ L++F R  +  +     G    +
Sbjct: 59  SSAEVQLIGKIVHLKTVEQKRGKRLVATFRDDTGEMELVWF-RSQKWFRERLKLGEPYVI 117

Query: 126 TGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYS-----LPTGLSVDLFKKIIVEAL 179
            G++        M HP   +    Q      ++ VY         G+S  L  + +   L
Sbjct: 118 FGRVNWYNGAFSMPHPDLELLSAHQQQKRIRMQPVYPSTEKLTRQGISNRLLTQWVAAVL 177

Query: 180 SRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP------ARERLAYDE 232
           +++  VLPE +   +L         EA  ++  PR      +         A+ RL ++E
Sbjct: 178 AQVREVLPETLPDRIL---------EALQLLPKPRSLVQIHFPDSNALLARAQARLKFEE 228

Query: 233 LLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQ 290
           L   Q+ALL  + + KK I G      G+      ++ +PF  T +Q+  I++I  D+  
Sbjct: 229 LFYIQLALLSKKHERKKRIRGYLFEQVGERFTAFYKDHLPFDLTGAQKRVIREIRADLGS 288

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
             +M R+LQGDVGSGKT+VA++ +  A++ G QA ++AP  ILAQQH+  + +  +   +
Sbjct: 289 NAQMNRLLQGDVGSGKTIVAVLTILLALDNGYQACLVAPTEILAQQHFNAVSELLEPLGL 348

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V ++TG++ +  R+  L  ++ G   I+IGTHA+ +  +++  L L I+DEQHRFGV Q
Sbjct: 349 PVGLLTGSVKEKDRKPLLAGLSDGSLPILIGTHAVLEPRVKFNNLGLAIIDEQHRFGVAQ 408

Query: 411 RLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           R KL +K    PH+L+MTATPIPRTL ++  GD+DIS I E P GRKP++TV+       
Sbjct: 409 RAKLWKKNKRPPHILVMTATPIPRTLAMSLYGDLDISLIDELPPGRKPVRTVLRGDRDRL 468

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMS 526
            V   LK  + +G++AY + P I+E +  +++ +++ F S+   F      ++I+HG+M 
Sbjct: 469 RVFGFLKDEIRKGRQAYIVYPLIQESEAMDYKDLMDGFESISREFPQPDFQVSIVHGQMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              KE  M  F  G  ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG
Sbjct: 529 PEAKEYEMQRFAEGKTQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            + S CIL+    LS+ + TRL  +  T DGF IAE DLK R  G +LG +QSG+    I
Sbjct: 589 ADQSYCILMCGEKLSEEARTRLQTMARTNDGFEIAETDLKLRGPGNLLGTQQSGVLSLRI 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           A       LL+ AR+ A+ +L  DP L     + +R  L   Q  E FQ
Sbjct: 649 ADLVRDRELLQSAREFARQLLLADPGLEQAENRVVRTRL---QQMEVFQ 694


>gi|150003059|ref|YP_001297803.1| ATP-dependent DNA helicase RecG [Bacteroides vulgatus ATCC 8482]
 gi|294775914|ref|ZP_06741413.1| ATP-dependent DNA helicase RecG [Bacteroides vulgatus PC510]
 gi|149931483|gb|ABR38181.1| ATP-dependent DNA helicase RecG [Bacteroides vulgatus ATCC 8482]
 gi|294450283|gb|EFG18784.1| ATP-dependent DNA helicase RecG [Bacteroides vulgatus PC510]
          Length = 698

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 245/668 (36%), Positives = 381/668 (57%), Gaps = 21/668 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74
            +GVG + +  L+K +N  + +     DLL+Y P  ++DR     I EI      + + G
Sbjct: 12  LQGVGPQRATVLNKELNLFSLH-----DLLYYFPYKYVDRSRLYYIHEIDGNMPYIQLKG 66

Query: 75  YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
            I    +    ++R      +DGTG I L++F     +L++ +    +  V GK      
Sbjct: 67  EILSFETLGEGRQRRLVGHFSDGTGIIDLVWFQGIKYLLEH-YKTRTEYIVFGKPTVFNG 125

Query: 135 RIIMVHPHYIFHNSQDVNFPLIEAVYS----LPTG-LSVDLFKKIIVEALSRL-PVLPEW 188
           RI + HP         ++   ++  Y+    +  G L+    +K++  AL+ L   L E 
Sbjct: 126 RINVAHPDMDPSGELTLSTMGLQPYYNTTERMKRGFLNSHGLEKLMKNALALLQEPLAET 185

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   L+++    S+ EA   IH P   K+ E    A+ RL ++EL   Q+ +L   K  +
Sbjct: 186 LPPRLVEEHHLMSLDEAIRNIHFP---KNPELLRKAQYRLKFEELFYVQLNILRYSKDRQ 242

Query: 249 KEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           ++  G+     G+I      +N+PF  T +Q+  IK+I +DM    +M R+LQGDVGSGK
Sbjct: 243 RKYRGLRFERVGEIFNTFYSQNLPFELTGAQKRVIKEIRKDMGSGRQMNRLLQGDVGSGK 302

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVAL++M  A++ G QA +MAP  ILA QHYE I+K+     + VE++ G++    R K
Sbjct: 303 TLVALMSMLIALDNGYQACMMAPTEILAAQHYETIRKFLFGMDVRVELLMGSVKGKKREK 362

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLL 425
            L+ +  G   I+IGTHA+ +D++ +  L +VI+DEQHRFGV QR KL  K    PHVL+
Sbjct: 363 ILKDLLTGDVQILIGTHAVLEDTVGFSSLGMVIIDEQHRFGVAQRAKLWSKNVCPPHVLV 422

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    NR   +   ++  + EG++ 
Sbjct: 423 MTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRRASLYASIRKQIEEGRQI 482

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           Y + P I+E ++ + +++ E +  +   F    ++ +HG+M   +K++ M  F +G  ++
Sbjct: 483 YIVYPLIKESEKMDIKNLEEGYELICAEFPDCQVSKVHGKMKPAEKDAEMQRFVSGETQI 542

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           ++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL+    L++ +
Sbjct: 543 MVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLTEET 602

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDA 663
             RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R  A
Sbjct: 603 RKRLEIMVQTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQYVRDVA 662

Query: 664 KHILTQDP 671
             I+ +DP
Sbjct: 663 NRIVDEDP 670


>gi|77414524|ref|ZP_00790670.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae 515]
 gi|77159422|gb|EAO70587.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae 515]
          Length = 671

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 244/669 (36%), Positives = 375/669 (56%), Gaps = 29/669 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P+S  +G G K +    K+      +     DLL Y+P  + D   +     +  E+
Sbjct: 3   LQSPISNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 57  AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA--LSRLPV 184
           GK    K+ I  +    +    +D   P    VY +  G+S     K I  A  +S    
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEISAHLE 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E  G+PI       +  + ++PF  T +Q+ ++ +IL DMS    M R+LQGDVG
Sbjct: 224 SENKSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDEILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++   +  I   I+T  M  A 
Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQXFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR+
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARR 640

Query: 662 DAKHILTQD 670
            A  I+  +
Sbjct: 641 VASDIVKDN 649


>gi|225572202|ref|ZP_03781066.1| hypothetical protein RUMHYD_00496 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040374|gb|EEG50620.1| hypothetical protein RUMHYD_00496 [Blautia hydrogenotrophica DSM
           10507]
          Length = 685

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 234/679 (34%), Positives = 373/679 (54%), Gaps = 43/679 (6%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK--ISEISEERIV 70
           L   +GVG+K      ++    N   T   DLL Y+P ++    Y P   I ++ E  + 
Sbjct: 7   LRDIKGVGEKTEQLFGRL----NLQTTE--DLLHYYPRNY--EVYAPAVPIGQLKENAVQ 58

Query: 71  TITGYI-SQHSSFQLQKRRPYKILLNDGTGE---ITLLFFYRKTEMLKNVFFEGRKITVT 126
           T+ G+I S+ +S Q+   R   IL      E   ++L +F+     L+    +G      
Sbjct: 59  TVAGFIASKAASAQV---RNLNILTTSIVSEGEKLSLTWFH--APYLRKTLKQGSYFVFR 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           G++ K   R++M HP      + +     ++ +Y L  GL+     K +   L    +  
Sbjct: 114 GRVVKKNGRMVMEHPEIFTPAAYEEILNRMQPIYGLTAGLTNKTVTKYVRLLLENQALEG 173

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E++  D+ ++        A   IH P   KD +    AR RL +DE L   +++ +++++
Sbjct: 174 EYLPLDVRERYRLADYNFAIQNIHFP---KDRDSLIAARSRLVFDEFLFFILSVWMLKEK 230

Query: 247 FKKEIGI-PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            +  +   P+    +  +K+L N+P+  TK+Q +  +++ QD+ +   M R++QGDVGSG
Sbjct: 231 TQSAVNYYPMKPVWE-TEKLLENLPYRLTKAQRNVWREVEQDLCRDRLMSRLIQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE---------IIT 356
           KT++A +AM    + G QA +M P  +LA QHY+ +        ++ E         ++T
Sbjct: 290 KTILAFLAMILTAQNGYQAALMVPTEVLAVQHYKAL------CGLLSEHGLGDCRPILLT 343

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+     +R+   +IA G+ ++I+GTHAL Q+ ++Y+KL LVI DEQHRFGV+QR  LT 
Sbjct: 344 GSTTAKEKRERYAQIASGEVNLIVGTHALIQEKVEYHKLALVITDEQHRFGVRQREALTT 403

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           +   PHVL+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++  +   +  + ++
Sbjct: 404 RGAVPHVLVMSATPIPRTLAIILYGDLDISVIDELPASRLPIKNCVVNTSYRPKAYQFME 463

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVM 534
             +  G++AY ICP +EE +  +  +V+E    L   F   I+I  +HG+M   +K  +M
Sbjct: 464 KQILMGRQAYVICPMVEESEGLDVENVLEYTQKLKSIFPPEISICSLHGKMKPKEKNQIM 523

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F  G  K+L++TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRG E S CI 
Sbjct: 524 EDFSAGKIKILVSTTVVEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGTEQSYCIF 583

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +      K    RL +L  + DGF IA EDLK R  G++ GI+QSG  +F +A       
Sbjct: 584 MQGN--DKEVSKRLKILGQSNDGFFIASEDLKLRGPGDLFGIRQSGEMQFQLADIYQDSG 641

Query: 655 LLEIARKDAKHILTQDPDL 673
           LL+ A + A+ IL  D  L
Sbjct: 642 LLKSASEAARDILDLDSCL 660


>gi|219850480|ref|YP_002464913.1| ATP-dependent DNA helicase RecG [Chloroflexus aggregans DSM 9485]
 gi|219544739|gb|ACL26477.1| ATP-dependent DNA helicase RecG [Chloroflexus aggregans DSM 9485]
          Length = 862

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 237/693 (34%), Positives = 378/693 (54%), Gaps = 75/693 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL++ P  + D   R  I E+      T+ G ++   +     +   ++ ++D TG I 
Sbjct: 160 DLLYHFPRRYDDVRSRRTIDELQVGAEETVIGEVTDVRTIGTGPKLRVRVEVSDETGSIE 219

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---------IFHNSQDVNF 153
            +FF ++   +      G+ I ++GK+     +     P +         + H  + V  
Sbjct: 220 AIFFNQR--WIAQQIRVGQTIVLSGKVTVFGGKRQFTSPRWERYTPDPDALLHTGRLV-- 275

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
                ++ L  GL  +  +++I + +  + P +P+ +  +   +     + EA   IH P
Sbjct: 276 ----PIHPLTQGLHENQARRLIKQVVDTVAPRIPDHLPPERCAQAGLLPLGEALTQIHFP 331

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
               + E  + AR RL +DE L  Q+ +L  ++ +++E+G+P  ++ ++  ++LR +PF 
Sbjct: 332 ---TNHESLAAARRRLGFDEFLFIQLGVLQRKRLWQQEMGLPFTIDLQVHAELLRLLPFR 388

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T +Q+ AI +I  D+ + + M R+LQGDVGSGKT+VA  A+  AV  G Q  +MAP  I
Sbjct: 389 LTAAQQRAINEIFADLQRPSPMARLLQGDVGSGKTVVAAAALLQAVANGFQGALMAPTEI 448

Query: 333 LAQQHYEFIKK-------------------YTQN-----------------TQII----- 351
           LA+QH + +K+                   Y Q                   QII     
Sbjct: 449 LAEQHAKNLKQLLSRVPVPRRSSEAMDGEQYRQTDWRAQLDPEEAARLNEIVQIIGMTPE 508

Query: 352 ---------VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
                    V ++TG++    RR+ L+ IA G+  +++GTHAL  +++Q+ +L LV+VDE
Sbjct: 509 EDMGGHGVRVALLTGSLGTRERRRVLDGIARGEIDVVVGTHALITETVQFARLGLVVVDE 568

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           QHRFGV+QRL+L  K   PH+L+MTATPIPRTL LT  GD+D+S + E+P GR+ I+T  
Sbjct: 569 QHRFGVEQRLRLKNKGCNPHMLVMTATPIPRTLTLTIYGDLDVSVLDERPPGRQEIRTRR 628

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTS-SIAI 520
           I     ++    ++  ++EG++ Y ICP +EE ++ +  S  E +  L HE F    +A+
Sbjct: 629 ISRLEREKAYRHIRKQVAEGRQVYVICPLVEESEKLDLPSAEEMYEKLQHEVFPDLRVAL 688

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG+MS  +K+ VM +F++    +L++T VIEVGIDV +A+ I+IE AE FGLAQLHQ R
Sbjct: 689 LHGKMSAREKDGVMRAFRDHQYDILVSTAVIEVGIDVPNATTIVIEGAERFGLAQLHQFR 748

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG   S CIL+     ++ S  RL+ L+ T DGF +AE DL+ R  GE  G +QSG
Sbjct: 749 GRVGRGSHQSYCILISDSD-NQQSKERLAALEQTNDGFQLAEFDLQLRGPGEFFGTRQSG 807

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            P   +A+ +    LL  AR+ A+ IL+ DP L
Sbjct: 808 TPDLKMAR-QGDTRLLSEARRMAEAILSDDPAL 839


>gi|326315383|ref|YP_004233055.1| ATP-dependent DNA helicase RecG [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323372219|gb|ADX44488.1| ATP-dependent DNA helicase RecG [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 708

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 232/675 (34%), Positives = 362/675 (53%), Gaps = 47/675 (6%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           +R IDL  + P  + D      +  + +     I   ++  S  QL+ RR   + ++DGT
Sbjct: 19  SRDIDLALHLPLRYEDETRITPLRNVRDGDTAQIEATVTA-SEVQLRPRRQLVVTVDDGT 77

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IE 157
           G   L FF       K +   G ++ + G++K       M+HP +     +    P  + 
Sbjct: 78  GTCELRFFSFYPSHQKTLAV-GARLRIRGEVKGGFWGRQMLHPAFRLAGGE---LPAALT 133

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQ-------KKSFPSIAEAFN 207
            VY    GL     ++ +V AL R+ +   +P  +E  + +        +S+ ++ +A  
Sbjct: 134 PVYPTTAGLPQPYLRRAVVGALQRVDLSETIPPGLEPPIPRFLGEGGGGRSWWTLRDALV 193

Query: 208 IIHNPRK----AKDFEWTSPARERLAYDELLAGQIALLLM---RKQFKKEIGIPINVE-G 259
            +H+P      A   + + PA +RL  +ELLA Q++ L     R + +  +  P+  E G
Sbjct: 194 FLHHPTPDVALATLEDHSHPAWQRLKAEELLAQQLSQLEAKRERDRLRAPVLRPVPGEQG 253

Query: 260 KIA--QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
             A  +++L  +PF  T +Q+    +I  D+++   M R+LQGDVGSGKT+VA ++ A  
Sbjct: 254 GPALHERLLAALPFGLTAAQQRVCAEIAADLARPVPMHRLLQGDVGSGKTVVAALSAAVC 313

Query: 318 VEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           ++AG Q  +MAP  ILA+QH+     +++     +   V  + G   +  R   L  +  
Sbjct: 314 MDAGWQCALMAPTEILAEQHFRKLIGWLEPLLAASGRRVAWLAGGQKKKERAAMLALVES 373

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL----KLTQKATAPHVLLMTAT 429
           G+A +++GTHA+ QD +++  L L ++DEQHRFGV QRL    KL  +   PH+L+M+AT
Sbjct: 374 GEAALVVGTHAVIQDQVRFRNLALAVIDEQHRFGVAQRLALRRKLADQGMEPHLLMMSAT 433

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL ++   D+D+S I E P GR PI T +I  +R DEVIER+   ++ G++ YW+C
Sbjct: 434 PIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVIERIGAQVASGRQVYWVC 493

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---------IAIIHGRMSDIDKESVMDSFKNG 540
           P IEE +  +  +       L E              + ++H RM   +K++VM+ F  G
Sbjct: 494 PLIEESEALDLSNATATHVELSEALQGDPARGQAPVMVGLLHSRMPPAEKKAVMELFTAG 553

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
           T  +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY    
Sbjct: 554 TMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSAASACVLLYSTGE 613

Query: 600 ---LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
              L + +  RL  +  T+DGF IA  DL+ R  GE LG +QSG P    A       LL
Sbjct: 614 GGRLGETARDRLRAMAETQDGFEIARRDLEIRGPGEFLGARQSGAPMLRFADLATDTLLL 673

Query: 657 EIARKDAKHILTQDP 671
           E AR+ A  +L   P
Sbjct: 674 EWARETAPRMLDGHP 688


>gi|260909993|ref|ZP_05916680.1| DNA helicase RecG [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635943|gb|EEX53946.1| DNA helicase RecG [Prevotella sp. oral taxon 472 str. F0295]
          Length = 699

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 247/682 (36%), Positives = 377/682 (55%), Gaps = 46/682 (6%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG +    LSK +N        F DLL Y+P  ++DR    +I+++  +   V + G+I
Sbjct: 14  GVGPRKKEILSKELNIKT-----FGDLLEYYPYKYVDRTQIFRIAQLQGDMPYVQVKGHI 68

Query: 77  SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
                F +  R+   +    DG     L++F + T+ + N +  G +  V GK      R
Sbjct: 69  LSFEEFDMGPRKKRLVAHFTDGWNVADLVWF-QGTKYVLNTYKVGVEYIVFGKPSVYGGR 127

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK--IIVEALSRLP---------- 183
               HP       +     L E     P   + D  KK  I   A+ +L           
Sbjct: 128 YQFAHPDI----DEATELKLAEMGMQ-PHYGTTDRMKKSGITSRAMEKLTKGLLEQMQAP 182

Query: 184 ---VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
               LP +I   L       S  EA   +H P    + +    A+ RL ++EL   Q+ +
Sbjct: 183 LAETLPPFITNAL----HLVSRDEAMRGVHYPHNTDELQ---RAQVRLKFEELFYVQLNI 235

Query: 241 L----LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           L      R++++   G   +  G+        N+PF  T +Q+  + +I  DM    +M 
Sbjct: 236 LRYANFHRRKYR---GYHFSKIGQYFNDFYHNNLPFELTCAQKRVMHEIRNDMDSGRQMN 292

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  AV+ G QA +MAP  ILA+QH   I++  Q T +  E++
Sbjct: 293 RLLQGDVGSGKTLVALMSMLIAVDNGFQACMMAPTEILAEQHLATIQQMLQGTGVTAELL 352

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG +    R   L+R+  GQ HI++GTHAL +D++Q+  L L +VDEQHRFGV+QR KL 
Sbjct: 353 TGIVKGKRRADVLQRLVSGQLHILVGTHALLEDTVQFAHLGLAVVDEQHRFGVKQRAKLW 412

Query: 416 QKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            K    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N+   +   
Sbjct: 413 GKNDNPPHVLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTLHKYDNQTTSLYAG 472

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  ++ G++ Y + P IEE ++++ +++ E + +L + F    ++ IHGRM   +KE+ 
Sbjct: 473 IRQQVNLGRQVYIVYPLIEESEKTDLKNLEEGYKALTDIFPEYKMSKIHGRMKSKEKEAE 532

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CI
Sbjct: 533 MARFASGETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCI 592

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELH 652
           L+ +  LS  +  R+ ++  T DGF IAE DLK R  G++ G +QSGM   L IA     
Sbjct: 593 LVTNRALSAETRKRIDIMCETNDGFRIAEADLKLRGPGDLEGTQQSGMAFDLKIANIARD 652

Query: 653 DSLLEIARKDAKHILTQDPDLT 674
            +L+++AR +A+ I+ +DP+  
Sbjct: 653 GALVQMARDEAQKIIERDPNCN 674


>gi|325685873|gb|EGD27939.1| DNA helicase RecG [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 679

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/673 (34%), Positives = 370/673 (54%), Gaps = 26/673 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +F P++  +GVG K +  L  +            DLLFY P  + +    P + ++ + +
Sbjct: 7   IFRPVTALKGVGAKTAEALQSL------GIYSIYDLLFYFPYRYDELENLP-LDQLEDGQ 59

Query: 69  IVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            V + G ++ +   + F   K R  +K+ ++    +I ++ F+ +  + K +   G++I 
Sbjct: 60  KVMLKGIVATNPYQNYFGYHKSRVSFKLRIDH---DIIMVNFFNQPWLTKQLSV-GQEIA 115

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           V GK   L+ + +  +   +  NS D   P    +YS+   +     + +I  A++  + 
Sbjct: 116 VYGKYD-LRKQSLSAYKLLVNKNSDDGMAP----IYSVNRQIKQKKLQTMIDLAIAESMD 170

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            +   + +DL +     +  +    +H+P   KD      AR    + E    Q+ L LM
Sbjct: 171 EMGNAVPEDLRKHYRLMADQDLVIAMHHP---KDLTEAKEARRSAVFREFFLFQMQLALM 227

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
             Q K   G   + + +   K+ +++PF+ +  Q+  I +I  DM    +M R+LQGDVG
Sbjct: 228 SSQNKSHSGYAKHYDLEEIGKLTKSLPFALSPDQKKVINEIFADMFVDQQMQRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ A+  AV AG QA +M P  ILA QHY  I    ++  + V ++TG+     
Sbjct: 288 SGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTKTME 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+  + +A G  +++IGTHAL Q+ + + KL LVI+DEQHRFGV QRL L  K   P +
Sbjct: 348 RREIYKELADGSINVVIGTHALIQEQVAFKKLGLVIIDEQHRFGVVQRLALINKGDRPDI 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPR+L LT  GD  +S+I   PAGRKPIK+     +++DEV   ++  L+EG 
Sbjct: 408 LAMTATPIPRSLALTVYGDTALSEIRHLPAGRKPIKSYWKTSSQLDEVYSLMRQQLAEGF 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I E +  +  +     + L   F    + ++HG+M+  DKE +MD F  G  
Sbjct: 468 QIYAVTPLISESETIDLENAEALHDRLAGEFPDQEVVLLHGKMAAADKEQIMDRFAAGEV 527

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ T+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG+  S C+ L  P  ++
Sbjct: 528 DILVTTSVIEVGVDVANANLMVIFDADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-TE 586

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F          ++ +AR +
Sbjct: 587 AGKQRMKIVAETNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRTGSVVSDYQVMVVARDE 646

Query: 663 AKHILTQDPDLTS 675
           AK I+  DPDL +
Sbjct: 647 AKRIVQADPDLKA 659


>gi|332881843|ref|ZP_08449486.1| ATP-dependent DNA helicase RecG [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332680187|gb|EGJ53141.1| ATP-dependent DNA helicase RecG [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 698

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 235/643 (36%), Positives = 367/643 (57%), Gaps = 20/643 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           DLL+  P   IDR     I E++ +   V I G I    +    ++R       DG G +
Sbjct: 34  DLLYTFPYKHIDRTRLYYIHELTADMPYVQIRGQILSFDTEGEGRKRRLVAHFTDGQGVV 93

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            L++F    + + + +       V G+      RI + HP     +   +N   ++  Y+
Sbjct: 94  DLIWF-NGIKYVLSAYKTRTDYIVFGRPSVFNGRINIAHPDVDKADELRLNTMGLQPYYT 152

Query: 162 LP-----TGL---SVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
                   GL   S++ F   + E L     +PE +   L+   +  S+ EA   +H P 
Sbjct: 153 TTDKMKRAGLNSRSIEHFTATLFERLD--AGIPETLPPYLVSSLNLVSLDEALRHVHYPT 210

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPF 271
            A+D      A+ RL ++EL   Q+ ++   R++ +K  G      G++      +N+PF
Sbjct: 211 SAEDLR---KAQFRLKFEELFYIQLNIIKYARERRQKYRGYVFVRVGELFHTFYEKNLPF 267

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T +Q+  I++I QDM    +M R+LQGDVGSGKTLVAL+++  A++ G QA IMAP  
Sbjct: 268 ELTGAQKRVIREIRQDMGSGRQMNRLLQGDVGSGKTLVALMSILIALDNGFQACIMAPTE 327

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+QHY   +       + VE++TG +    R+  L+ +  G+  I++GTHA+ +D++ 
Sbjct: 328 ILAEQHYVTFQNLLFGMPVRVELLTGTVKGKRRQAVLDGLKDGEVRILVGTHAVLEDTVL 387

Query: 392 YYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +  L +V++DEQHRFGV QR +L T+ +  PHVL+MTATPIPRTL +T  GD+D+S I E
Sbjct: 388 FKSLGMVVIDEQHRFGVAQRARLWTKNSNPPHVLVMTATPIPRTLAMTLYGDLDVSVIDE 447

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P GRKPI+T+    NR + +   L+  L+EG++AY + P I+E ++ + +++ E +  L
Sbjct: 448 LPPGRKPIQTIHQFDNRRESLYRGLRSQLNEGRQAYVVYPLIKESEKMDIKNLEEGYEQL 507

Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                   I+ +HG+M   +KE+ M  F +G  ++L+ATTVIEVG++V +AS+++IENAE
Sbjct: 508 CRDLPEYKISRVHGKMKAAEKEAEMQDFISGKTQILVATTVIEVGVNVPNASVMVIENAE 567

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            FGLAQLHQLRGRVGRG + S CIL+    LS ++  R+ ++  T DGF IAE DLK R 
Sbjct: 568 RFGLAQLHQLRGRVGRGADQSYCILVTKYQLSADTRKRIQIMTETNDGFEIAEADLKLRG 627

Query: 630 EGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDP 671
            G++ G +QSG+   L +A       +L++AR+ A+ +L  DP
Sbjct: 628 PGDLEGTQQSGVSFTLRLANLARDGQVLQLARETAEKVLDDDP 670


>gi|222109587|ref|YP_002551851.1| ATP-dependent DNA helicase recg [Acidovorax ebreus TPSY]
 gi|221729031|gb|ACM31851.1| ATP-dependent DNA helicase RecG [Acidovorax ebreus TPSY]
          Length = 723

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 236/680 (34%), Positives = 357/680 (52%), Gaps = 51/680 (7%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           R IDL  + P  + D      I    +   V I   ++  S  Q++ RR   + + DGTG
Sbjct: 33  RDIDLALHLPLRYEDETRITPIRSARDGDTVQIEATVTA-SEVQMRPRRQLVVTVEDGTG 91

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
              L FF       K +   G ++ V G+IK       M+HP   F  ++      +  V
Sbjct: 92  SCELRFFSFYPSHQKTMAV-GARLRVRGEIKGGFWGRQMLHP--AFRKAEGDLPAALTPV 148

Query: 160 YSLPTGLSVDLFKKIIVEALSRL------------PVLPEWIEKDLLQKKSFP-SIAEAF 206
           Y     L     ++ +  AL+R+            P +P W+  +       P S+ EA 
Sbjct: 149 YPTVAQLPQAYLRRAVASALTRVELPETLPPGLEPPAVPSWVRGNGQNGLLRPWSLREAL 208

Query: 207 NIIHNPRKAKDF------EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260
             +H+P  A D       + + PA +RL  +ELLA Q++ L  +++  +     +  + +
Sbjct: 209 LFLHHP--APDVALATLQDHSHPAWQRLKAEELLAQQLSQLTAKRERARLRAPALRPQAQ 266

Query: 261 IA-----QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
                  +++L  +PFS T +Q    ++I +D+++   M R+LQGDVGSGKT+VA +A  
Sbjct: 267 AGSTPLHEQLLGVLPFSLTAAQRRVGEEIARDLARPVPMHRLLQGDVGSGKTVVAALAAT 326

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII----VEIITGNMPQAHRRKALERI 371
             ++AG Q  +MAP  ILA+QH+  +  + Q         V  + G   +  R + L RI
Sbjct: 327 VCMDAGWQCALMAPTEILAEQHFAKLIGWLQPLLAARGRQVAWLVGGQKKKERAEMLARI 386

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMT 427
             G+A +++GTHA+ Q+ +++  L L ++DEQHRFGV QRL L +K       PH+L+M+
Sbjct: 387 ESGEAALVVGTHAVIQEQVRFKNLALAVIDEQHRFGVAQRLALRKKLQHAGMEPHLLMMS 446

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL ++   D+D+S I E P GR PI T +I  +R DEV+ER+   ++ G++ YW
Sbjct: 447 ATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVVERIGAQVAAGRQVYW 506

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIA---------IIHGRMSDIDKESVMDSFK 538
           +CP IEE +  +  +       L E      A         ++H RM   +K++VMD FK
Sbjct: 507 VCPLIEESEALDLSNATATHAELSEALQGDAAHGRAPVMVGLLHSRMPAAEKKAVMDLFK 566

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY  
Sbjct: 567 GGQMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYST 626

Query: 599 P----LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
                L + +  RL  +  T DGF IA  DL+ R  GE LG +QSG      A       
Sbjct: 627 GDSGRLGETARDRLKAMAETTDGFEIARRDLEIRGPGEFLGARQSGDALLRFADLATDTL 686

Query: 655 LLEIARKDAKHILTQDPDLT 674
           LLE AR+ A  +L + P L 
Sbjct: 687 LLEWARETAPQMLDRHPLLA 706


>gi|310659145|ref|YP_003936866.1| recg [Clostridium sticklandii DSM 519]
 gi|308825923|emb|CBH21961.1| RecG [Clostridium sticklandii]
          Length = 685

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 238/658 (36%), Positives = 360/658 (54%), Gaps = 29/658 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYK------ILLND 96
           DLL ++P  + DR +  KI+++  E  V I G I       +  ++P K      I + D
Sbjct: 33  DLLMHYPMRYEDRRHFKKIADVHFEEKVCIEGKI-----ISVDVKKPKKNMVILRICIYD 87

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156
            T +  L  F      +++    GR I   G  K++     +  P   F N       +I
Sbjct: 88  NTQKAFLTVF--NNPYIQSQLTIGRTIKAYGTAKRINGICNISAPEIDFDNYSKKT-GII 144

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLP-EWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
             VY L  GL  D   K I   L  L +   E++     Q+     + +A   IH P   
Sbjct: 145 YPVYPLTRGLFNDEIIKSIKWILQSLNIKELEYLNSKYRQQLRLCELDDAIKNIHFP--- 201

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI---LRNIPFS 272
           KD      A+ RL +DE     I L  ++    KE GI      +   KI   +  +PF 
Sbjct: 202 KDPLLIKVAKFRLVFDEFFLLNIGLSSIKHGLVKEPGIKHESSEETKSKIEAFVEELPFE 261

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            TK+Q   +++I+ DM+    M R++QGDVGSGKT++A+IA   A   G Q  +MAP  I
Sbjct: 262 LTKAQSKVMQEIIDDMASDKPMQRLVQGDVGSGKTVIAMIAAYYAYINGYQCALMAPTEI 321

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QHY       +NT   + ++TG+     +R   E + +G   I+IGTHAL +D +++
Sbjct: 322 LAKQHYNNFLDIFKNTNAEIRLLTGSTTAKSKRTVYEELLNGSCDIVIGTHALIEDKVKF 381

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
             L LVI DEQHRFGV+QR KL  K      +L+MTATPIPRTL     GD+DIS I + 
Sbjct: 382 NNLSLVITDEQHRFGVRQRSKLLLKNHLTVDMLVMTATPIPRTLAFILHGDLDISVIDQM 441

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P+GRKPIKT        ++V +  K  ++ G++ Y +CP IEE +  + ++  E F  L 
Sbjct: 442 PSGRKPIKTFASKKQEANKVYDFAKQEIALGRQIYIVCPLIEESENLDIQAANELFEKLS 501

Query: 512 EHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           E       +A++HG+M   +K+ +MD+F +G   +LI+TTVIEVG++V ++S++II++A+
Sbjct: 502 ESVFKGYKLALLHGKMKAQEKQEIMDAFSSGRIDILISTTVIEVGVNVPNSSVMIIQDAQ 561

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQ 627
            FGL+QLHQLRGRVGRGE  S C+LLY     KN Y   R+ +++N+ DGF I+++DL+ 
Sbjct: 562 RFGLSQLHQLRGRVGRGEYQSYCVLLYE---GKNKYIEQRMKIMQNSNDGFEISQKDLEL 618

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           R  GE  G +Q G+  F +A    H S+L +A+  A  ++++DP+L +   ++I+I L
Sbjct: 619 RGPGEYFGTRQHGLDNFKLADISKHISILNLAKDFADEVMSEDPELKNEENKAIKIEL 676


>gi|297584000|ref|YP_003699780.1| ATP-dependent DNA helicase RecG [Bacillus selenitireducens MLS10]
 gi|297142457|gb|ADH99214.1| ATP-dependent DNA helicase RecG [Bacillus selenitireducens MLS10]
          Length = 677

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 238/665 (35%), Positives = 372/665 (55%), Gaps = 30/665 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           P+S   G+G +Y   L  + I+         +DLL + P  + +   +P ++E      V
Sbjct: 4   PVSAVSGIGPRYVEILESMGIHT-------VMDLLTHFPFRYENHEIQP-LAEAEHNERV 55

Query: 71  TITGYISQHS-----SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           T+ G +  HS      F+ +K R    LL DG   +    F+ +  M K +     K+ V
Sbjct: 56  TVQGTV--HSVPELRMFKGKKSRLTVRLLADGL--LVKAVFFNQPYMKKQISLND-KLIV 110

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPV 184
           +G   K + +I       I    + +    +E VYS+   L  +  ++ I  A++  +  
Sbjct: 111 SGTFDKHRLQI----SGAIVKAEEKIKRGGLEPVYSVKGDLKQNKMRQFIEAAVADFVEG 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           +PE +   LL++    +   AF  +H P   KD  +   AR R+AY+ELL  Q+ +   R
Sbjct: 167 VPELLPDSLLERYQLLARNRAFYYLHFP---KDESFFLQARRRMAYEELLLFQLKMQWFR 223

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           + + K E G   +   +     L ++PF  T +QE  + +IL D+    RM R+LQGDVG
Sbjct: 224 QTERKAESGQQKSWSKEAFDSFLLSLPFKLTDAQERVLTEILTDLGGAERMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A  A+ A   +G Q  +M P  ILA+QH E +        + +  I+G+     
Sbjct: 284 SGKTVIAAAALYANYLSGFQGALMVPTEILAEQHSESLASLFNGMGMTIAHISGSSKTKE 343

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R+ALER+A G+  ++ GTHAL Q+ + ++KL LVI DEQHRFGV+QR  L  K   P V
Sbjct: 344 KREALERLATGEVDLVTGTHALIQEGVSFHKLGLVITDEQHRFGVEQRRTLRNKGLRPDV 403

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +++ GD+D+S I + PAGRKPI+T     N +  V++ +   + +G 
Sbjct: 404 LFMTATPIPRTLAISAFGDMDVSTIDQLPAGRKPIETHWGKRNMLPRVMQFIDREIEKGH 463

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +AY I P IEE +    ++ ++   S  E     S+ ++HGR+   +K++VM +F+    
Sbjct: 464 QAYVIAPLIEESEVLEVQNAIDLHKSFEEALPHRSVGLMHGRLHHEEKDAVMQAFQKNDV 523

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CILL  P  + 
Sbjct: 524 QILVSTTVVEVGVNVPNATVMVIYDADRFGLAQLHQLRGRVGRGSDQSHCILLADPK-TD 582

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+S++  T DGF ++  DL+ R  GE  G++QSGMPKF +A       +LE ARKD
Sbjct: 583 VGKERMSIMTETTDGFELSRRDLEMRGPGEFFGVRQSGMPKFKVADLVEDYRILETARKD 642

Query: 663 AKHIL 667
           A+ I+
Sbjct: 643 ARTII 647


>gi|187778910|ref|ZP_02995383.1| hypothetical protein CLOSPO_02505 [Clostridium sporogenes ATCC
           15579]
 gi|187772535|gb|EDU36337.1| hypothetical protein CLOSPO_02505 [Clostridium sporogenes ATCC
           15579]
          Length = 679

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 248/681 (36%), Positives = 387/681 (56%), Gaps = 44/681 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66
           +++P++T +GVG K    L K   C   N    +DLL Y P    FID + + K+S  ++
Sbjct: 3   VYSPITTLKGVGPKTKEQLEK---CMIFN---IMDLLLYFPRDYEFIDNYSKDKLS--NK 54

Query: 67  ERIVTITGYISQHSSFQLQKR-RPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + I+ +     Q  + +   R R  KIL     NDG   I   +F +    +KN F  G 
Sbjct: 55  KVIIKV-----QVENIKRDVRTRTGKILTTIIFNDGEKAIVGSWFNQP--YIKNYFKIGE 107

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           +  + G +++ +   + ++   I  N  ++ V    I   Y L   L  +L  K++  AL
Sbjct: 108 EYILQGSLREYRG-TLTINNAQILKNKYAEKVEERKIIPKYPLKGDLKNNLLIKLVNSAL 166

Query: 180 SRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
             + +   LP W    L++K  F S+ ++   IH P   K+ E    +  RL + ELLA 
Sbjct: 167 GNIAIGENLPRW----LIEKYKFISLDKSIRTIHKPENQKELE---ESIRRLKFQELLAY 219

Query: 237 QIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            + +  +++  K    GI   V  + +  I+R++PF  T +Q   +++I +D  ++  M 
Sbjct: 220 CLKIASLKEYLKTATEGIAFKVLEETSD-IIRSLPFKLTNAQNRVLEEIFKDQKKEKPMN 278

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT++ALI +   ++ G Q V++AP  ILA QHYE   K  ++  + + ++
Sbjct: 279 RLLQGDVGSGKTIIALICLFNVIKNGYQGVMLAPTEILAIQHYEEALKLFKDFNLNIALL 338

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
            G++  + +++  E++  G+  +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+ 
Sbjct: 339 VGSVKASLKKEIKEKLKKGEIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKML 398

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K  +   L+M+ATPIPRTL L+  GD+D+S I E P GRK I T  +  +    V    
Sbjct: 399 NKGRSIDTLVMSATPIPRTLTLSLYGDLDLSIIDELPPGRKKIDTYYVNDSYRKRVYNFA 458

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESV 533
              +++G++ Y +CP +EEK+E N  SV + +N L E +     IAI+HG+M   +K+++
Sbjct: 459 LKEINDGRQVYIVCPLVEEKEELNLNSVEKLYNDLKEDYFKEVEIAILHGKMKGKEKDAI 518

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FK G  K LI+TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG+  S CI
Sbjct: 519 MKEFKEGKIKALISTTVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGKYKSYCI 578

Query: 594 LLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           L+      KN     R+ ++K++ DGF +AEEDLK R  GEI G +Q G    L+A    
Sbjct: 579 LIAK---VKNDIIRKRMEIMKSSNDGFFVAEEDLKLRGGGEIFGFRQHGSSNLLLADVIE 635

Query: 652 HDSLLEIARKDAKHILTQDPD 672
              LL+IA  ++K I+  + +
Sbjct: 636 DIHLLKIANVESKKIIDSNSE 656


>gi|229104417|ref|ZP_04235086.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-28]
 gi|228679115|gb|EEL33323.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-28]
          Length = 682

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 231/663 (34%), Positives = 375/663 (56%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+     LL +       EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPD----GLLNRYKLLPRYEALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSTELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A 
Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMAVELLTSSVKGAR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L R+  G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILARLEQGEVDILVGTHALIQGEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  +++G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEITKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|264680588|ref|YP_003280498.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni CNB-2]
 gi|262211104|gb|ACY35202.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni CNB-2]
          Length = 725

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 234/666 (35%), Positives = 356/666 (53%), Gaps = 33/666 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL  + P  + D      +    +   V I   ++ HS  QL+ RR  K+ ++DG+
Sbjct: 48  TRDIDLALHLPLRYEDETRIVALKNARDGETVQIEATVT-HSEVQLRPRRMLKVTVDDGS 106

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--DVNFPLI 156
               L FF       K +   G ++ + G++K       M+HP +     +      P+ 
Sbjct: 107 STCLLTFFSFYPSQQKTMA-PGARLRIRGEVKGGFWGRQMMHPAFRVAGGELPTALTPVY 165

Query: 157 EAVYSLPTG-----LSVDLFKKIIVEAL--SRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209
            A  SLP       ++  L +  + E L   + P + ++  ++ LQ      +  A   +
Sbjct: 166 PATASLPQAYLRRAIASALLRADLSETLPPGQSPPIAQFYGQNGLQPAY--DLRNALIFL 223

Query: 210 HNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM---RKQFKKEIGIPINVEGKIA 262
           H+P          + + PA +RL  +ELLA Q++       R + +  +  P      + 
Sbjct: 224 HHPTPDVALVTLEDHSHPAWQRLKAEELLAQQLSQYEAKRERARLRAPVLRPQAGMADLT 283

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+ L  +PF  T +Q+  + +I  DM ++  M R+LQGDVGSGKT+VA ++  A +EAG 
Sbjct: 284 QQFLAQLPFGLTGAQQRVVGEIRADMERRIPMHRLLQGDVGSGKTVVAALSAVACIEAGW 343

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQII----VEIITGNMPQAHRRKALERIAHGQAHI 378
           Q  +MAP  ILA+QH+  +  + +         V  + G   +  R   L  +  G+A +
Sbjct: 344 QCALMAPTEILAEQHFGKLVGWLEPILAPLGKKVAWLAGAQKKKERAAMLALVESGEAAL 403

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRT 434
           ++GTHA+ Q+ +Q+  L L ++DEQHRFGV QRL L QK  A    PH+L+M+ATPIPRT
Sbjct: 404 VVGTHAVIQEQVQFKNLALAVIDEQHRFGVAQRLALRQKLAATGMEPHLLMMSATPIPRT 463

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PI T +I  +R DEVIER+   ++ G++ YW+CP IEE
Sbjct: 464 LAMSYYADLDVSTIDELPPGRTPIVTKLISDSRKDEVIERIGAQVASGRQVYWVCPLIEE 523

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +  +  +       L E      + ++H RM   +K++VM+ F  G   +L++TTVIEV
Sbjct: 524 SEALDLSNATATHEYLSEMLPGVMVGLLHSRMPTAEKKAVMELFSAGVMGVLVSTTVIEV 583

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY----HPPLSKNSYTRLS 609
           G+DV +AS+++IE++E FGL+QLHQLRGRVGRG   S+C+LLY    +  LS     RL 
Sbjct: 584 GVDVPNASLMVIEHSERFGLSQLHQLRGRVGRGAAASACVLLYSVNDNGRLSDTGKERLR 643

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            +  T DGF IA  DL+ R  GE LG +QSG P    A  E    LL+ AR+ A  +L Q
Sbjct: 644 AMAETNDGFEIARRDLEIRGPGEFLGARQSGAPMLRFADLEQDVMLLDWARELAPLMLEQ 703

Query: 670 DPDLTS 675
            P L +
Sbjct: 704 FPALAA 709


>gi|15836956|ref|NP_297644.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa 9a5c]
 gi|9105182|gb|AAF83164.1|AE003887_7 ATP-dependent DNA helicase [Xylella fastidiosa 9a5c]
          Length = 718

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 231/615 (37%), Positives = 349/615 (56%), Gaps = 37/615 (6%)

Query: 92  ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD 150
           +L +D    +T+ FF+ +   +   F  G ++   G  K  +    +VHP Y I    +D
Sbjct: 92  VLTDDAHHILTMRFFHFRAAQIAR-FTVGTRVRAYGVPKLGQYGWEIVHPSYRILAPGED 150

Query: 151 VNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP------VLPEWIEKDLLQKKSFPSIA 203
           V     ++ VY +  G+   + +++I EAL  LP      +LP+    DL      P + 
Sbjct: 151 VRLNDCLDPVYPVIEGVGPAIVRQLIREALEHLPTDAVLELLPDVWLSDL----GLPMLR 206

Query: 204 EAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
            A  I+H P    D       T PA++RL+ +ELLA Q++L   R   ++     +    
Sbjct: 207 TALLIMHRPPLNTDIARLMVGTHPAQQRLSLEELLAHQLSLRRQRIALQRHSAPALPDGA 266

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            +   +L  +PF  T +Q+     I  D+++   MLR++QGDVGSGKT+VA +A   AVE
Sbjct: 267 ALVASLLHALPFHLTAAQQQVFAQIAADVAKPVPMLRLVQGDVGSGKTVVAALAALLAVE 326

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q  + AP  +LA+QH+  ++ + +   + V  +   +    R +AL  +A G A ++
Sbjct: 327 QNKQVALAAPTALLAEQHFINLRDWLEPLGVRVHWLAAKVTGKARLQALNDVASGDAQVV 386

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATA---PHVLLMTATPIPRTL 435
           +GTHAL Q+S+ ++ L L IVDEQHRFGV QRL L  K ATA   PH L+MTATPIPRTL
Sbjct: 387 VGTHALMQESVVFHDLALTIVDEQHRFGVHQRLLLRDKGATAGIVPHQLVMTATPIPRTL 446

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            + +  D+D+S I E P GR P++T ++   R  E++ER+++  ++G++ YW+C  I+E 
Sbjct: 447 AMAAYADLDVSVIDEMPPGRTPVQTNVLSAERRPELVERIRLACAQGRQVYWVCTLIDES 506

Query: 496 K--------ESN---FRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFKN 539
           +         SN    RS V+   + +E  ++      + ++HGRM   +K+  M +FK 
Sbjct: 507 QTEAEQAPPSSNDIEHRSEVQAAQATYEALSAQLPGVRVGLVHGRMKAAEKQRTMRAFKC 566

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+ATTVIEVG+DV +AS++IIENAE FGLAQLHQLRGRVGRG  +SSC+LLY PP
Sbjct: 567 NEIDVLVATTVIEVGVDVPNASLMIIENAERFGLAQLHQLRGRVGRGSVVSSCVLLYQPP 626

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS  +  RL +++ T DGF IAE+DL+ R  GE+LG +Q+G+  F +A       LL   
Sbjct: 627 LSMLARQRLEIMRQTNDGFAIAEKDLELRGPGELLGTRQTGLAAFRVADLARDAHLLPRV 686

Query: 660 RKDAKHILTQDPDLT 674
              A  +L + P L 
Sbjct: 687 YSLANMLLDESPQLA 701


>gi|163757124|ref|ZP_02164228.1| ATP-dependent DNA helicase [Kordia algicida OT-1]
 gi|161322945|gb|EDP94290.1| ATP-dependent DNA helicase [Kordia algicida OT-1]
          Length = 701

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 252/699 (36%), Positives = 380/699 (54%), Gaps = 41/699 (5%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P+   +GVG   +  L K    G      FI+L    P+ +ID+    K++E+  
Sbjct: 4   NVLQTPIDYLKGVGPNRADLLRK--ELGIHTYQDFINLF---PNRYIDKTRYFKVNELQR 58

Query: 67  ERI-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               V + G I      Q ++ +       D TGE+ L++F R  + +K+         +
Sbjct: 59  NSSEVQVVGKIVHIKMVQQKRGKRLVATFVDATGEMELVWF-RGHKWIKDSLKLNTPYVI 117

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVD---------LFKKII 175
            GK         M HP        + +    ++ VY     L+           L +++ 
Sbjct: 118 FGKTNWFNGTFSMPHPEMELLKEHEQSLRTAMQPVYPSTEKLNNKGITNRVINKLMQQLF 177

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           +E+ ++     E +   +L +    S  EA   IH P+     E  + A+ RL ++EL  
Sbjct: 178 IESRTQFY---ETLPPTILNELKLISKTEALFNIHFPKSQ---ELLAKAQYRLKFEELFY 231

Query: 236 GQIALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNR 293
            QI L+      K +I G P +  G+   +   N +PF  T +Q+  IK+I  D+    +
Sbjct: 232 IQIQLITKNLIHKSKIKGFPFDQVGEKFNEFYANHLPFELTNAQKRVIKEIRNDLGSNAQ 291

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VAL++M  A++   QA IMAP  ILA QHY  I +  +   + V+
Sbjct: 292 MNRLLQGDVGSGKTIVALMSMLLAIDNDFQACIMAPTEILAIQHYNGIMELVKPLGLNVK 351

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG++    RR   E +  G  HI+IGTHA+ +D +Q+  L L I+DEQHRFGV QR K
Sbjct: 352 LLTGSVKTKDRRVIHEMLEDGSLHILIGTHAILEDKVQFKNLGLAIIDEQHRFGVAQRAK 411

Query: 414 LTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L  K T  PH+L+MTATPIPRTL ++  GD+D+S I E P GRK IKTV    +R D   
Sbjct: 412 LWHKNTFPPHILVMTATPIPRTLAMSLYGDLDVSVIDELPPGRKAIKTV----HRYDS-- 465

Query: 473 ERLKVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHG 523
            RLKV       +++G++ Y + P I+E ++ +++ +++ + S+   F      I+I+HG
Sbjct: 466 NRLKVFRFIRDEIAKGRQIYIVYPLIQESEQLDYKDLMDGYESIAREFPMPDYQISIVHG 525

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M   DK+  M+ F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRV
Sbjct: 526 KMKPADKDFEMNRFIKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRV 585

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG E S CIL+    LS +  TRL  +  T DGF IAE DLK R  G I+G +QSG+  
Sbjct: 586 GRGAEQSFCILMTSHKLSADGKTRLETMVRTSDGFEIAEVDLKLRGPGNIMGTQQSGVLN 645

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
             IA     + +L+ AR  A+ +L  DP L +   +++R
Sbjct: 646 LKIADIVKDNDILKTARYFAQQVLKADPSLMAPEHKAVR 684


>gi|270308438|ref|YP_003330496.1| ATP-dependent DNA helicase [Dehalococcoides sp. VS]
 gi|270154330|gb|ACZ62168.1| ATP-dependent DNA helicase [Dehalococcoides sp. VS]
          Length = 818

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 224/657 (34%), Positives = 360/657 (54%), Gaps = 33/657 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL+Y P+  +D     KIS++      TI   + Q     +  RR  + +L D TG + 
Sbjct: 148 DLLYYFPNRHLDYSRLKKISQLEAGSEQTIIANVWQSKVNYMGGRRSTEAVLGDDTGNMR 207

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVY 160
            ++F     M++N+    R + ++G++     R +   P +  +   +  ++   +  VY
Sbjct: 208 AVWF-NNPYMVRNLKPNAR-VVLSGRVSIFNGRPVFESPEWEELPDEADLIHTGRLVPVY 265

Query: 161 SLPTGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
            L  GL     ++++   +    P + +++ +D L++     +AEA    H P      E
Sbjct: 266 PLTAGLHQRSLRRLMKNFIDISTPGISDFLPEDTLKRNRLLPLAEAIRQAHFPDTE---E 322

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
               AR RLA+DEL   Q+ +L  +K+++++ G  + V        +  +PF  T +Q  
Sbjct: 323 LKDTARNRLAFDELFILQLGVLAKKKRWQEQTGRALKVNLPAIDHFISRLPFKLTDAQTK 382

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            + DI  D+S+   M R+LQG+VGSGKT+VA+I++  A   G Q   MAP  ILA+QH++
Sbjct: 383 CLADIKADISKNVPMSRLLQGEVGSGKTIVAVISLFTAAANGLQGAFMAPTEILAEQHFK 442

Query: 340 FIKKYTQNTQIIVEIITG-------------------NMPQAHRRKALERIAHGQAHIII 380
            + +   +   +  ++ G                   +M  + +    E+I  G+  I I
Sbjct: 443 SVTRLFASIAKVSTLLDGVHTFEGLLDHPLRVALMISDMKSSQKDILKEKIKKGEIDIAI 502

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTHAL Q  I++  L L ++DEQHRFGV+QR  L  K   PH+L+MTATPIPRTL LT  
Sbjct: 503 GTHALIQKEIRFKSLGLAVIDEQHRFGVEQRSALKSKGLNPHILIMTATPIPRTLALTLY 562

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           GD+D+S I E P GR+ IKT  +   + +     ++  +  G++A+ ICP +EE +    
Sbjct: 563 GDLDLSVIDELPPGRQSIKTRWLKPEQRNSAYNFIRKQIEAGRQAFIICPLVEESEAIQA 622

Query: 501 RSVVERFNSL-HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           ++    + +L  E F    +A++HGRM+  +KES+M  F  G   +L++T V+EVGID+ 
Sbjct: 623 KAATAEYETLSSEVFPEYKVALLHGRMNAAEKESIMKHFNEGKMDILVSTPVVEVGIDIP 682

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A+++++E+A+ FGL+QLHQ RGRVGRG E S C+ L   P S     RLS++++T+DGF
Sbjct: 683 NATVMLVESADRFGLSQLHQFRGRVGRGTEQSYCMFLAKNP-SLLGQERLSIIESTQDGF 741

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLT 674
            +AEEDL+ R  GE  G +QSG+P   +A   + D  LLE ARK+A  +   DP+L 
Sbjct: 742 KLAEEDLRLRGPGEFFGTRQSGLPDLRMAS--ISDVGLLEQARKEATRLFESDPELN 796


>gi|229019051|ref|ZP_04175891.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1273]
 gi|229025297|ref|ZP_04181716.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1272]
 gi|228735988|gb|EEL86564.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1272]
 gi|228742253|gb|EEL92413.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1273]
          Length = 682

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 233/663 (35%), Positives = 377/663 (56%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K    E   +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GPAVRQQEVEPVYSVKGKLTVKQVRRFIAQALKEYGDSIIEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +   L + K  P   EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPDGL---LSRYKLLPRY-EALKALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +     Q+    +PF  T +Q   + +I++DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEISSVELQEFTDALPFPLTGAQSRVVDEIMKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA IA+  A  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A 
Sbjct: 288 SGKTVVAAIALYGAKLAHYQGAMMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGAR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L R+  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILARLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|218514909|ref|ZP_03511749.1| ATP-dependent DNA helicase protein [Rhizobium etli 8C-3]
          Length = 431

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/416 (46%), Positives = 260/416 (62%), Gaps = 2/416 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K++      + R IDLLF+ P + IDR  +P 
Sbjct: 16  MRPAILDPLFSPISGLPGVGPKIAELLVKLLGRETPEDCRVIDLLFHAPFALIDRRNQPG 75

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 76  IARAPQGAIVTITARVDRHQVPPRGKSNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPI 135

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GK+     R  MVHP YI    +  N PL+E +Y L  GLS    +KII  AL
Sbjct: 136 DAEVTVSGKVDWFNGRASMVHPDYIVRAEEAENLPLVEPIYPLTAGLSPKTLRKIIDAAL 195

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA-YDELLAGQI 238
            R P LPEWI+  L QK+  P      +     R  +      P R   + YDE LAGQ+
Sbjct: 196 PRFPELPEWIDPALAQKQGLPFYPRQLSTCCMSRATRPISTRRPRRGGGSPYDEFLAGQL 255

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +L L+R++ +K  G P+   G ++ KIL+ +PFSPT SQ  AI DIL+DM+   RMLR+L
Sbjct: 256 SLSLVRQRLRKVAGQPVLATGAVSGKILKTLPFSPTSSQNEAIADILKDMAGTERMLRLL 315

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVAL++MAA +E+GGQAV+MAP  ILA+QH+  I K+  +  + +E++TG 
Sbjct: 316 QGDVGSGKTLVALMSMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGR 375

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
                R + LERIA G A I+IGTHALFQDS+ Y KL+L +VDEQHRFGV QRL+L
Sbjct: 376 TKGREREEILERIASGAAQIVIGTHALFQDSVTYDKLMLAVVDEQHRFGVHQRLRL 431


>gi|168335018|ref|ZP_02693133.1| RecG-like helicase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 677

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 221/583 (37%), Positives = 340/583 (58%), Gaps = 21/583 (3%)

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           ++DGT ++T++FF  +   +KN F  G      G +K   N++ MV P Y          
Sbjct: 82  VSDGTEQMTIIFF--EQPYMKNNFHVGLIYNFYGTVKLKYNKLNMVSPSYQTLEKYTQQT 139

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
            LI  VY+    LS  + +K I  A+   +  + + I  D++ K +     +A   IH P
Sbjct: 140 KLI-PVYASTYQLSQFIIRKHIKNAIDIAICNVSDVIPTDIVAKHNLMPKRQAIENIHFP 198

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGI----PINVEGKIAQKILR 267
           +    F     AR RL ++EL   Q++L +++  F+ K+ G     P+++E       + 
Sbjct: 199 KDDASF---VEARRRLVFEELFLLQLSLYILKSDFRQKQAGTVKQSPVDLEA-----FVE 250

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +PF  T +Q+  +K++  D+       R++QGDVGSGKT+VA IA+   V  G Q+ +M
Sbjct: 251 TLPFKLTAAQQRVVKEVAADLKLLGAANRLIQGDVGSGKTVVAAIALFIVVRNGFQSTLM 310

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  +LA+QH+EF++K  +   I V ++TG+  +  +   LE++A G   I++GTHAL +
Sbjct: 311 APTEVLARQHFEFLEKTFEAFDISVALLTGSTTKKQKMGLLEKLAKGDIDILVGTHALIE 370

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D++ Y KL LVI DEQHRFGV+QRL L QK   P VL MTATPIPRTL L   GD+DIS 
Sbjct: 371 DNVVYAKLGLVITDEQHRFGVRQRLSLAQKGDFPDVLAMTATPIPRTLALILYGDMDIST 430

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE-KKESNFRSVVER 506
           I E P GR PIKT  +       + + ++  +S G++ Y ICP +EE +K  N + V+  
Sbjct: 431 IDELPPGRTPIKTNAVDSRYYARIYKFMREHVSNGRQCYIICPMVEENEKVENVKDVISY 490

Query: 507 FNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              L     + +A+  +HG+M   DK  +M+ F NG   +L++TTV+EVG++V +A+II+
Sbjct: 491 AEKLQAEEFAGLAVEYLHGKMKAKDKNKIMERFANGEIDILVSTTVVEVGVNVPNATIIL 550

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           IENAE FGL+QLHQLRGRVGRG   S CIL+     +K++  RL +++ T DGF IA+ D
Sbjct: 551 IENAERFGLSQLHQLRGRVGRGSYESFCILV-SDSYNKDTRARLKIMQETTDGFKIADTD 609

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L+ R  GE  G +Q G+ +  IA       +L++ +++ ++I+
Sbjct: 610 LQLRGSGEFFGTRQHGLLEMKIANMYTDIDVLKVVQQEVENIM 652


>gi|313159146|gb|EFR58521.1| ATP-dependent DNA helicase RecG [Alistipes sp. HGB5]
          Length = 702

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 247/699 (35%), Positives = 376/699 (53%), Gaps = 33/699 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGY 75
           GVG+  +  L K +           D+L ++P  +IDR    +I+EI+E    ++     
Sbjct: 13  GVGEARARLLDKELGIRTLG-----DMLSHYPFRYIDRTKVYRIAEITEGAPTLLQFRAR 67

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           I+  +     +++ +   + D TG   L++F     + K V   GR+  + G+    +  
Sbjct: 68  ITGVAYAGTGRKKRFTAYVQDPTGSAELVWFQGIKWIEKRVEV-GREYLIFGRPSFYRGL 126

Query: 136 IIMVHP------HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-----PV 184
           + M HP        +   ++     +  +   L   L      +II    + +       
Sbjct: 127 LSMAHPELETMEQALSRKAESGMQGIYPSTEKLSNVLGAKGMYQIICNTWALVKDHITDC 186

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           +PE +      +     + +A+  IH P+ A   E    A+ RL +DELL  Q+ +   R
Sbjct: 187 MPEAVRA----RYGLIPLRDAYYNIHFPQSA---EMLRQAQYRLKFDELLGIQLNVQSRR 239

Query: 245 -KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            ++  K  G + + V G         +PF  T +Q+  +K+I QD     +M R+LQGDV
Sbjct: 240 TERLSKNNGFLFMKVGGVFNTFYNEKLPFPLTGAQKRVVKEIRQDTVTGFQMNRLLQGDV 299

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVAL++M  AV+ G QA +MAP  ILA+QH+  I +  +   +   ++TG+    
Sbjct: 300 GSGKTLVALMSMLLAVDNGFQACMMAPTEILARQHFATITRMLEGMDVKTAVLTGSSKVK 359

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAP 421
            RR ALE IA G+  I+IGTHAL +D +Q+  L  V++DEQHRFGV+QR +L T+    P
Sbjct: 360 ERRLALEGIASGEVDILIGTHALIEDRVQFANLGFVVIDEQHRFGVEQRARLWTKNEQPP 419

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H+L+MTATPIPRTL +T  GD+D+S I E P GR+PIKTV         +   +K  +++
Sbjct: 420 HILVMTATPIPRTLAMTLYGDLDVSVIDELPPGRRPIKTVHYTDAARLRLFGFMKQEIAK 479

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFK 538
           G++ Y + P I+E +  +++ + + + ++   F        I HG+M   DKE  M  FK
Sbjct: 480 GRQVYVVYPLIKESEAMDYKDLTDGYEAISRDFPLPDYVTTICHGKMKPADKEESMRQFK 539

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +++AT+VIEVG+DV +A++++IE+AE FGL+QLHQLRGRVGRG E S CIL+   
Sbjct: 540 SGEADIMVATSVIEVGVDVPNATVMVIESAERFGLSQLHQLRGRVGRGGEQSYCILMSGE 599

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLE 657
            LSK S  RL  +  T DGF +AE DLK R  G+I G  QSGM   L IA P L   +L 
Sbjct: 600 KLSKESRARLQAMCETNDGFRLAELDLKLRGAGDINGTLQSGMAFDLKIANPTLDVQILT 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
           ++R+ A  ILT D DL+    + ++ L   Y   E   F
Sbjct: 660 VSREAAAAILTADRDLSLPEHRGLQELRRKYSGQEEIDF 698


>gi|82523774|emb|CAI78518.1| hypothetical protein [uncultured bacterium]
          Length = 694

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 223/670 (33%), Positives = 378/670 (56%), Gaps = 20/670 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYI--SQHSSFQLQKRRPYKILLNDGTGE 100
           DL+++ P  + DR +   ++++   +  T+ G +   +       K+  +++ ++DG+G 
Sbjct: 33  DLMYFFPRRYEDRRHIVPLAKVVVGQWQTVRGKVLLGEARKSWYTKKHVFEVAIDDGSGR 92

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPL--IE 157
           I+ ++F +  +   + F  GR++   GK+ + K+R+ MV P Y +    +  +  L  I 
Sbjct: 93  ISCVWFNQPYQA--HYFVPGRQVVCYGKVDQYKDRLQMVSPEYEVIEEDEKESLSLNRIV 150

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
            +Y L  G++    +K++  AL +    L + +   L  K    ++  +   IH P+   
Sbjct: 151 PMYPLTKGMTQRFIRKVVWAALGKYKEGLTDELPVPLRNKLHLYNLKRSIENIHFPQNEN 210

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
           D      A +R++++E    Q++++L R    ++ G    +   + +K      F+ T +
Sbjct: 211 D---QQEALKRISFEEFYFFQVSVMLRRLSITQKQGFAHVIPDVLTEKFSEGFGFNLTGA 267

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   I+DI +D+ +   MLR+LQGDVGSGKTLVAL    AA E   Q+ +MAP  ILA+Q
Sbjct: 268 QNRVIQDIKEDLQKPTPMLRLLQGDVGSGKTLVALFGTLAAFENKHQSALMAPTEILAKQ 327

Query: 337 HYEFIKKYTQN---TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           HY+ I    +      +   ++ G++    + K  ++IA G   +++GTHAL  +++ + 
Sbjct: 328 HYDTICALMKKGPLKGMKAALLVGSLKDQEKEKVHKKIAAGTLDLVVGTHALITENVMFK 387

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L  V++DEQH+FGV+QR  L +K   P VL+MTATPIPRTL +T  GD+D+S I E P 
Sbjct: 388 DLSYVVIDEQHKFGVRQRALLAEKGRNPDVLIMTATPIPRTLCITLYGDLDVSVIDEMPP 447

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GR  I T         EV + +K  L EG++AY + P IEE ++S+ ++  E F +  + 
Sbjct: 448 GRGKITTRHFKHENDKEVYQLVKKRLDEGRQAYIVYPIIEESEKSDLKAADEMFKNFKKK 507

Query: 514 FTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 + ++HG+M   + + +M+ FK+G   +L+ATTV+EVG+DV +A++++IE+AE F
Sbjct: 508 EFKGYRVGLVHGQMKQQEAQKIMEQFKDGKIDVLVATTVLEVGVDVANATVMVIEHAERF 567

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GLAQLHQLRGR+GRG   SSC+L+     ++ ++ R+S +  T DGF IA+EDL  R  G
Sbjct: 568 GLAQLHQLRGRIGRGVHDSSCLLIADLE-TEEAHKRISAICATNDGFKIAQEDLMIRGPG 626

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ-Y 690
              G  Q G+ +  +A P     +LE+AR++A+ +L  DP L +  G++ +IL  + + Y
Sbjct: 627 HFFGRHQHGLNELKVANPATQLDILELAREEAQELLQDDPKLDT--GKNYQILHVIQKRY 684

Query: 691 NEAFQFIRAG 700
               Q + AG
Sbjct: 685 PGYLQMVSAG 694


>gi|315223950|ref|ZP_07865795.1| DNA helicase RecG [Capnocytophaga ochracea F0287]
 gi|314946122|gb|EFS98126.1| DNA helicase RecG [Capnocytophaga ochracea F0287]
          Length = 724

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 251/715 (35%), Positives = 387/715 (54%), Gaps = 40/715 (5%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P++  RGVG + +  L   ++        + DLL   P+ +IDR    KI+E+  
Sbjct: 25  NILHTPINYLRGVGNQRAELLKTELSI-----YEYQDLLNLFPNRYIDRTKFYKINELQN 79

Query: 67  ERI-VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKI 123
               V + G I    + +   ++  +++    D TG + L++F +  + L+         
Sbjct: 80  NNAEVQLVGKIVNLRTVESAHQKGTRLVATFVDDTGAMELVWF-KGLKWLRESLKINEPY 138

Query: 124 TVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
            + GK+        M HP   +    +      I+ VY  P+  +  L K+ I   + R 
Sbjct: 139 VIFGKLNFFGGTFSMPHPEMDLLSEFKKAGHSSIQPVY--PS--TEKLAKRNITNRVMRQ 194

Query: 183 PV----------LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            V            E +  ++L   +  S  EA   IH P         + A  RL ++E
Sbjct: 195 LVQTVFEEIGNSFAENLPDNILASMNLISKQEAMRNIHFPTNQT---LLTKASVRLKFEE 251

Query: 233 LLAGQIAL----LLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           L   Q+ L    LL +++F+   G P  NV          ++PF  T +Q+  +K+I  D
Sbjct: 252 LFYIQVQLVRKNLLHKQKFQ---GQPFKNVGDAFMNFYNHHLPFPLTDAQKRVLKEIRAD 308

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           +    +M R+LQGDVGSGKT+VAL+ M  AV+ G QA +MAP  ILA QHY+ I +  + 
Sbjct: 309 VGSNAQMNRLLQGDVGSGKTIVALMTMLLAVDNGCQACLMAPTEILANQHYQNISELLKE 368

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
           T + V ++TG+     R+   E++  G+  I+IGTHAL ++ +Q+  L L I+DEQHRFG
Sbjct: 369 TGVTVALLTGSSKTKERKMLDEQLQSGELSILIGTHALLENKVQFRNLGLAIIDEQHRFG 428

Query: 408 VQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           V+QR KL  K T  PH+L+MTATPIPRTL ++  GD+D+S I E P GRKPIKT+    N
Sbjct: 429 VEQRSKLWHKNTIPPHILVMTATPIPRTLAMSVYGDLDVSIIDELPPGRKPIKTLHQFEN 488

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHG 523
              E  E +K  + +G++ Y + P IEE +  +F+++ E ++ +   F      ++++HG
Sbjct: 489 HRAETYEFIKKEIDKGRQVYVVYPLIEESEALDFKNLTEGYDYITASFPLPKYKVSMVHG 548

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           R+   +K+  M+ F     ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRV
Sbjct: 549 RLKPTEKDVEMERFLRNETQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRV 608

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG E S CILL    +S ++ TR+  +  T DGF IAE DLK R  G+++G +QSG+  
Sbjct: 609 GRGSEQSYCILLTGNKMSNDTRTRMETMVRTNDGFEIAEVDLKLRGPGDLMGTQQSGVLA 668

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY-LYQYNEAFQFI 697
             IA       +L+ AR  A  +L  DP+L   + Q I   LY L +Y   + +I
Sbjct: 669 LKIADLVKDQDILKAARFQAIDLLKADPNLELPKNQRIAHTLYQLQRYKNLWTYI 723


>gi|288929111|ref|ZP_06422956.1| ATP-dependent DNA helicase RecG [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329213|gb|EFC67799.1| ATP-dependent DNA helicase RecG [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 699

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 243/679 (35%), Positives = 377/679 (55%), Gaps = 44/679 (6%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG +    LSK +N        F DLL Y+P  ++DR    +I+++  +   V + G+I
Sbjct: 14  GVGPRKKEILSKELNINT-----FGDLLEYYPYKYVDRTQIYRIAQLQGDMPYVQVKGHI 68

Query: 77  SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
                F +  R+   +    DG     L++F +  + + + +  G +  V GK      R
Sbjct: 69  LSFEEFDMGPRKKRIVAHFTDGWNVADLVWF-QGAKYVLSTYKVGVEYIVFGKPSVYGGR 127

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK-IIVEALSRLP----------- 183
               HP       +     L E       G +  + K  I   A+ RL            
Sbjct: 128 YQFAHPDI----DEATELKLAEMGMQPHYGTTERMKKAGITSRAMERLTKGLLEQMQAPL 183

Query: 184 --VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              LP +I   L       S  +A   +H P    + +    A+ RL ++EL   Q+ +L
Sbjct: 184 TETLPPFITNAL----HLVSRDQAMRGVHYPHNTDELQ---RAQMRLKFEELFYVQLNIL 236

Query: 242 ----LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
                 R++++   G   +  G+        N+PF  T +Q+  + +I +DM    +M R
Sbjct: 237 RYANFHRRKYR---GYNFSKIGQFFNSFYHNNLPFELTGAQKRVMHEIRKDMDSGRQMNR 293

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKTLVAL++M  AV+ G QA IMAP  ILA+QH   +++  Q T +  E++T
Sbjct: 294 LLQGDVGSGKTLVALMSMLIAVDNGFQACIMAPTEILAEQHLATVQQMLQGTGVTAELLT 353

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G +    R   L+R+A GQ HI++GTHAL +D++Q+  L L +VDEQHRFGV+QR KL  
Sbjct: 354 GIVKGKRRADVLQRLASGQLHILVGTHALLEDTVQFAHLGLAVVDEQHRFGVKQRAKLWG 413

Query: 417 KA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           K+   PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N+   +   +
Sbjct: 414 KSDNPPHVLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTLHKYDNQTTSLYAGI 473

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           +  +  G++ Y + P I+E ++++ +++ E + +L + F    ++ IHG+M   +KE+ M
Sbjct: 474 RQQVGLGRQVYIVYPLIKESEKTDLKNLEEGYEALTDIFPEYKMSKIHGKMKSKEKEAEM 533

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F +G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL
Sbjct: 534 ARFASGETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCIL 593

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHD 653
           + +  LS  +  R+ ++  T DGF IAE DLK R  G++ G +QSGM   L IA      
Sbjct: 594 VTNRALSAETRKRIDIMCETNDGFRIAEADLKLRGPGDLEGTQQSGMAFDLKIANIARDG 653

Query: 654 SLLEIARKDAKHILTQDPD 672
           +L+++AR +A+ I+ +DPD
Sbjct: 654 ALVQLARDEAQKIVERDPD 672


>gi|332521832|ref|ZP_08398281.1| ATP-dependent DNA helicase RecG [Lacinutrix algicola 5H-3-7-4]
 gi|332042504|gb|EGI78706.1| ATP-dependent DNA helicase RecG [Lacinutrix algicola 5H-3-7-4]
          Length = 700

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 242/683 (35%), Positives = 381/683 (55%), Gaps = 31/683 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG   +  L K +         + DL+   P+ ++DR    KI++++   
Sbjct: 5   LQTPIDYLKGVGPNRADLLRKELGIHT-----YQDLINLFPNRYLDRTKYYKINQLNPST 59

Query: 69  I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V I G I+       ++ +       D TG + L++F R  + ++    +     + G
Sbjct: 60  AEVQIIGKITSFKEVAQKRGKRLVATFQDETGTMELVWF-RGQKWIRESLKKNVPYVIFG 118

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLS-VDLFKKIIVEALSRLPV- 184
           K      +  M HP        + N    ++ +Y     LS   +  +++++ +  L + 
Sbjct: 119 KTNLFGGKFNMPHPDIELKTEHEQNLRSTMQPIYPSTEKLSNKGITNRMMMKIMQNLFIE 178

Query: 185 ----LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
                 E + K++L+     S +EA   IH P+     E    A+ RL ++EL   Q+ L
Sbjct: 179 TGGKFVETLSKNILENLKIISKSEALFNIHFPKSP---ELLFKAQFRLKFEELFYIQLQL 235

Query: 241 LLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +L     K +I G P    G +     ++ +PF  T +Q+  +K+I  D+    +M R+L
Sbjct: 236 ILKNLIHKSKIKGFPFENVGALFNTFFKHHLPFELTGAQKRVLKEIRADLGSNAQMNRLL 295

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL++M  A++ G QA +MAP  IL+ QHY  +    +   I ++++TG+
Sbjct: 296 QGDVGSGKTIVALMSMLMALDNGFQACLMAPTEILSVQHYNGLVDLCKELNISIKLLTGS 355

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                RR+  + + +G+  I+IGTHAL +D +++  L L I+DEQHRFGV+QR KL +K 
Sbjct: 356 SKTLERREIHDMLENGELDILIGTHALLEDKVKFKNLGLAIIDEQHRFGVKQRSKLWKKN 415

Query: 419 T-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIE 473
           T  PHVL+MTATPIPRTL ++  GD+DIS I E P GRK IKTV    +R D    +V +
Sbjct: 416 TFPPHVLVMTATPIPRTLAMSVYGDLDISIIDELPPGRKTIKTV----HRYDSNRLKVFQ 471

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDK 530
            L+  + + ++ Y + P I+E  + +++ +++ + S+   F +    I+I+HG+M   DK
Sbjct: 472 FLRSEIKKKRQVYIVYPLIQESAQMDYKDLMDGYESIARDFPAPEFQISIVHGKMKPADK 531

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E  M  F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E S
Sbjct: 532 EFEMQRFIKGQTQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGAEQS 591

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            CIL+    LS+NS  R+  +  T DGF IAE DLK R  G+I+G +QSG+    IA   
Sbjct: 592 YCILMTSHKLSENSKKRIETMVRTNDGFEIAEVDLKLRGPGDIMGTQQSGILNLRIADIV 651

Query: 651 LHDSLLEIARKDAKHILTQDPDL 673
             + +L+ AR  AK +L +DP L
Sbjct: 652 KDNDILQHARYYAKKVLEKDPSL 674


>gi|228477237|ref|ZP_04061875.1| ATP-dependent DNA helicase RecG [Streptococcus salivarius SK126]
 gi|228251256|gb|EEK10427.1| ATP-dependent DNA helicase RecG [Streptococcus salivarius SK126]
          Length = 676

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 242/682 (35%), Positives = 383/682 (56%), Gaps = 52/682 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEE 67
           L +P++  +G G K +   +K+      +     DLL Y P  + D  ++ K I E+ + 
Sbjct: 8   LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYED--FKSKSIFELMDG 59

Query: 68  RIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYR-----KTEMLKNVFFEG 120
               ITG +   ++ Q    KR      +  G   I + FF +     K EM       G
Sbjct: 60  EKAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAISFFNQPYLVDKIEM-------G 112

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            ++ + GK  + K+ +  +    +    +D   P    VY +  G+S     K I  A  
Sbjct: 113 AEVAIFGKWDQKKSAVTGMK---VLAQVEDDMQP----VYHVAQGVSQAQLIKAIKAAFD 165

Query: 181 R--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              L +L E + + L+ K       EA   +H P   KD      A  R  ++EL   Q+
Sbjct: 166 SGALNLLEESLPQVLMDKYRLMGRQEAVRAMHFP---KDLAEYKQALRRTKFEELFYFQM 222

Query: 239 ALLLMRKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            L +++ + K E  G+ I   E KI  KI   +PF  T++Q+ ++ +IL DM     M R
Sbjct: 223 NLQVLKAENKSETNGLAIAYDEAKIKAKIAE-LPFPLTEAQQRSLSEILADMKSGAHMNR 281

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT++A +AM  A  AG Q+ +M P  ILA+QHY+ ++      +++  ++T
Sbjct: 282 LLQGDVGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSLQGLFPELEVV--LLT 339

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
             M  A ++ AL +I  G+A +I+GTH+L QD++ Y++L LVI DEQHRFGV QR    +
Sbjct: 340 SGMKAADKKVALSKIESGEAQMIVGTHSLIQDAVTYHRLGLVITDEQHRFGVNQRRIFRE 399

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K   P VL+MTATPIPRTL +T+ G++D+S I + PAGRKPI T  +   ++D  +  +K
Sbjct: 400 KGDNPDVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTALTWIK 459

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT------SSIAIIHGRMSDIDK 530
             L +  + Y+I P IEE +  + ++ V    +LH+  T      +++A++HGRM + +K
Sbjct: 460 GELEKDAQVYFISPLIEESEALDLKNAV----ALHQELTDFLGDSATVALMHGRMKNDEK 515

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + +M  FK+   ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S
Sbjct: 516 DQIMQDFKDKKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGHKQS 575

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+L+ +P  +     R+  +  T DGF++AEEDLK R  GEI G +QSG+P+F +A   
Sbjct: 576 YCVLVANPK-NDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIV 634

Query: 651 LHDSLLEIARKDAKHILTQDPD 672
              ++LE AR+ A  I++ DP+
Sbjct: 635 EDYNILEEARRVASQIVS-DPN 655


>gi|325678863|ref|ZP_08158461.1| ATP-dependent DNA helicase RecG [Ruminococcus albus 8]
 gi|324109367|gb|EGC03585.1| ATP-dependent DNA helicase RecG [Ruminococcus albus 8]
          Length = 678

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 241/694 (34%), Positives = 375/694 (54%), Gaps = 35/694 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+    GVG K S          N       DLL++ P  +ID +    I +     
Sbjct: 5   LAKPVMYLSGVGPKKSELYE------NMGVKTVYDLLYHFPRYYIDLNSPQTIRDAPLNE 58

Query: 69  IVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLL-----FFYRKTEMLKNVFFEGR 121
            V + G + +       +R    YK +  D T ++T++     + ++  E+ +  F  G+
Sbjct: 59  TVVLKGRVVRKLPEAPIRRGLSVYKAVFTDDTADLTIVIYNAGYLFKSLEVEREYFLVGK 118

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
              +TG + + +     ++P        +   P ++ VY L  G++ +L ++ +  AL+ 
Sbjct: 119 ---LTGNLIRREINSPQIYP-------AEGTDP-VQPVYRLTEGITQNLLRQNVHAALTS 167

Query: 182 LPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           L   + E +  ++L++    S+  A   IH P      E    A++RL +DELL   + +
Sbjct: 168 LGAQIYEPVPAEILRENELCSLGFAMQNIHFPTDMHTLEM---AKDRLVFDELLTLALGM 224

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L+M+ + ++  G  +   G+   +    +PF  T  Q++AI D + DM +   M R++QG
Sbjct: 225 LMMKSRCREHAGCVMT--GESIDEYYSGLPFELTDGQKNAINDCIADMQKNFPMNRLIQG 282

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT VA  A   A + G Q  +MAP  ILA QHYE +  + +   + V ++TG+M 
Sbjct: 283 DVGSGKTAVAAGAAFFAYKNGCQTALMAPTEILAAQHYETLCGFLEPLGVKVVLLTGSMT 342

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              + K    IA G+  +++GTHAL Q S  + KL LVI DEQHRFGV QR  L  K   
Sbjct: 343 AKKKEKVKAGIAAGEYSVVVGTHALVQASTTFKKLGLVITDEQHRFGVGQRAMLAGKGDN 402

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH L+M+ATPIPRTL L   GD+DIS + E P GR+P++T  +     +     +K  L 
Sbjct: 403 PHKLVMSATPIPRTLALMIYGDLDISVLKELPKGRQPVETYAVTGKLRERAFGYVKQHLD 462

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFK 538
           EG++ Y +CP IEE   ++ + V     +L E F     + ++HGR++   KE VM  FK
Sbjct: 463 EGRQGYIVCPMIEESA-ADLQDVKSYAKNLSEGFFKDYRVGLLHGRLAPDKKEKVMKQFK 521

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                LL++TTV+EVG+DV +A+I++IENA+ FGL+QLHQLRGRVGRG+  SSCIL+   
Sbjct: 522 EHELDLLVSTTVVEVGVDVPNAAIMVIENADRFGLSQLHQLRGRVGRGQFKSSCILITDN 581

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           P ++    RL +L  + DGF I++EDLK R  G+  G +Q G+PK  IA    +  +L  
Sbjct: 582 P-TEEVVQRLKILSKSHDGFEISQEDLKLRGPGDFFGSRQHGLPKMKIADMSQNMDVLVK 640

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILL-YLYQYN 691
           A+  AK IL +DP L + +   ++ L+ +L++ N
Sbjct: 641 AQAAAKVILDKDPQLDTPQNSGLKELVEHLFEQN 674


>gi|149370699|ref|ZP_01890388.1| ATP-dependent DNA helicase [unidentified eubacterium SCB49]
 gi|149356250|gb|EDM44807.1| ATP-dependent DNA helicase [unidentified eubacterium SCB49]
          Length = 701

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 386/712 (54%), Gaps = 40/712 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG   +  L   +         F DLL   P+ ++DR    KI E+    
Sbjct: 6   LQTPIEYLKGVGPNRANLLRTELGIHT-----FQDLLNLFPNRYLDRTKFYKIQELQRNN 60

Query: 69  I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V I G I+     + ++ +       D TG + L++F R  + +K+     +   + G
Sbjct: 61  ADVQIIGKITHIKMVEQKRGKRLVATFRDETGVMELIWF-RGQKWIKDNLKINQPYVIFG 119

Query: 128 KIKKLKNRIIMVHPHY--------IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA- 178
           K K       M HP             +S    +P  E + +  +G++  +  K++ +  
Sbjct: 120 KTKWFNGSFSMPHPELELVKEHKNKLRSSMQPIYPSTEKLTN--SGITNKVINKLMEQVF 177

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L       E + K ++ +    S +EA   IH P      E  + A  RL ++EL   Q+
Sbjct: 178 LDAKNAFTETLSKPIINELKLLSKSEAIFNIHFPENG---ERLARAEYRLKFEELFYIQL 234

Query: 239 ALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLR 296
            L+      K +I G P  V G   +    + +PF  T +Q+  +K+I QD+    +M R
Sbjct: 235 QLIRKNLIHKSKIKGYPFPVVGDNFKNFYNHHLPFQLTGAQKRVVKEIRQDLGSNAQMNR 294

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VAL++M  A++ G QA +MAP  IL+ QHY  + +  +  +I + ++T
Sbjct: 295 LLQGDVGSGKTIVALLSMLIALDNGFQACLMAPTAILSVQHYNGLVELCKGLEISISLLT 354

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+   + R+   E + +G  +I+IGTHAL +D +++  L L I+DEQHRFGV QR KL  
Sbjct: 355 GSSTTSQRKVIHENLENGSLNILIGTHALLEDKVKFKNLGLAIIDEQHRFGVAQRSKLWH 414

Query: 417 KAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           K    PHVL+MTATPIPRTL ++  GD+DIS I E P GRK IKTV    +R D    RL
Sbjct: 415 KNELPPHVLVMTATPIPRTLAMSVYGDLDISIIDELPPGRKEIKTV----HRFDS--NRL 468

Query: 476 KVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMS 526
           KV       ++ G++ Y + P I+E +  +++ +++ + S+   F      I+I+HG+M 
Sbjct: 469 KVFRFIRDEIALGRQVYIVYPLIQESEALDYKDLMDGYESIVRDFPQPKYQISIVHGQMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DKE  M+ F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG
Sbjct: 529 PADKEFEMNRFLKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            E S  IL+    LS ++ TRL+ + +T DGF IAE DLK R  G+I+G +QSG+    I
Sbjct: 589 AEQSYTILMTSHKLSADAKTRLATMTSTSDGFEIAEVDLKLRGPGDIMGTQQSGVLNLRI 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR-ILLYLYQYNEAFQFI 697
           A       +L+IAR  A  +L  DP LT+    +I+     L +Y   + +I
Sbjct: 649 ADIVKDSEILKIARSYAFQVLKADPGLTNTENLNIKNTFAQLVKYKNIWNYI 700


>gi|121592808|ref|YP_984704.1| ATP-dependent DNA helicase RecG [Acidovorax sp. JS42]
 gi|120604888|gb|ABM40628.1| ATP-dependent DNA helicase RecG [Acidovorax sp. JS42]
          Length = 723

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 234/678 (34%), Positives = 356/678 (52%), Gaps = 47/678 (6%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           R IDL  + P  + D      I    +   V I   ++  S  Q++ RR   + + DGTG
Sbjct: 33  RDIDLALHLPLRYEDETRITPIRSARDGDTVQIEATVTA-SEVQMRPRRQLVVTVEDGTG 91

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
              L FF       K +   G ++ V G+IK       M+HP   F  ++      +  V
Sbjct: 92  SCELRFFSFYPSHQKTMAV-GARLRVRGEIKGGFWGRQMLHP--AFRKAEGDLPAALTPV 148

Query: 160 YSLPTGLSVDLFKKIIVEALSRL------------PVLPEWIEKDLLQKKSFP-SIAEAF 206
           Y     L     ++ +  AL+R+            P +P W+  +       P S+ E+ 
Sbjct: 149 YPTVAQLPQAYLRRAVASALTRVELPETLPPGLEPPAVPSWVRGNGQNGLQRPWSLRESL 208

Query: 207 NIIHNPRK----AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
             +H+P      A   + + PA +RL  +ELLA Q++ L  +++  +     +  + +  
Sbjct: 209 LFLHHPTPDVALATLQDHSHPAWQRLKAEELLAQQLSQLTAKRERARLRAPALRPQAQAG 268

Query: 263 -----QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
                +++L  +PFS T +Q    ++I +D+++   M R+LQGDVGSGKT+VA +A    
Sbjct: 269 STPLHEQLLGVLPFSLTAAQRRVGEEIARDLARPVPMHRLLQGDVGSGKTVVAALAATVC 328

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII----VEIITGNMPQAHRRKALERIAH 373
           ++AG Q  +MAP  ILA+QH+  +  + Q         V  + G   +  R + L RI  
Sbjct: 329 MDAGWQCALMAPTEILAEQHFAKLIGWLQPLLAARGRQVAWLVGGQKKKERAEMLARIES 388

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMTAT 429
           G+A +++GTHA+ Q+ +++  L L ++DEQHRFGV QRL L +K       PH+L+M+AT
Sbjct: 389 GEAALVVGTHAVIQEQVRFKNLALAVIDEQHRFGVAQRLALRKKLQHAGMEPHLLMMSAT 448

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL ++   D+D+S I E P GR PI T +I  +R DEV+ER+   ++ G++ YW+C
Sbjct: 449 PIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVVERIGAQVAAGRQVYWVC 508

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIA---------IIHGRMSDIDKESVMDSFKNG 540
           P IEE +  +  +       L E      A         ++H RM   +K++VMD FK G
Sbjct: 509 PLIEESEALDLSNATATHAELSEALQGDAAPGRAPVMVGLLHSRMPAAEKKAVMDLFKGG 568

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
              +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY    
Sbjct: 569 QMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYSTGD 628

Query: 600 ---LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
              L + +  RL  +  T DGF IA  DL+ R  GE LG +QSG      A       LL
Sbjct: 629 SGRLGETARDRLKAMAETTDGFEIARRDLEIRGPGEFLGARQSGDALLRFADLATDTLLL 688

Query: 657 EIARKDAKHILTQDPDLT 674
           E AR+ A  +L + P L 
Sbjct: 689 EWARETAPQMLDRHPLLA 706


>gi|312869882|ref|ZP_07730021.1| ATP-dependent DNA helicase RecG [Lactobacillus oris PB013-T2-3]
 gi|311094467|gb|EFQ52772.1| ATP-dependent DNA helicase RecG [Lactobacillus oris PB013-T2-3]
          Length = 678

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 233/677 (34%), Positives = 363/677 (53%), Gaps = 42/677 (6%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFID---------- 54
           +  L  P+   +GVG K +  L+ + I+          DLL Y+P+ + D          
Sbjct: 1   MKSLQDPVVALKGVGPKRAADLATLGIDT-------VEDLLTYYPNRYDDVTPADLENVQ 53

Query: 55  -RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEML 113
            R        +  E +++  GY     SF+LQ               + ++ F+ +  + 
Sbjct: 54  DRQRITTQGTVVSEPLLSHFGYRRSRLSFRLQV-----------GPRVIMVTFFNQAYLA 102

Query: 114 KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK 173
           K V   G+ +TV GK    + ++        F ++ D       AVYS+   +     + 
Sbjct: 103 KRVAL-GQTVTVMGKWDAQRAQVTANK----FLSAGDQEQADSGAVYSVNKHIRQATLRG 157

Query: 174 IIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           +I +A      V+P  +   L Q             +H P   ++      AR   AY+E
Sbjct: 158 LIKQAFDEYQNVIPTLLPASLRQHYRLLDRRTMIKALHFP---ENVGQAKAARRTAAYEE 214

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
               Q+ L  +R+  +   G  I       ++ +  I F  T +Q+  + +I +D+ +  
Sbjct: 215 FFLFQLRLQAIRQARRHADGDRILYRNDELKEFIAGIGFELTDAQKRVVNEICRDLREPY 274

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +M R+LQGDVGSGKT+VA IA+ A + AG QA +MAP  ILA QH E + +    T + V
Sbjct: 275 QMNRLLQGDVGSGKTIVAAIAIYATITAGYQAALMAPTEILAAQHAEKLSRVFAGTHVHV 334

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG++     R+    I  G+ ++IIGTHAL QD ++Y  L LVI DEQHRFGV QR 
Sbjct: 335 GLLTGSLTAKQHRELTGAIKRGEINLIIGTHALIQDDVEYANLGLVITDEQHRFGVNQRQ 394

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T  + +++  E +
Sbjct: 395 LLREKGAHPDVLAMTATPIPRTLAITTYGEMDVSVIDELPAGRKAIETRWLKVDQQSEAL 454

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDK 530
             L+  L+ G +AY + P IEE +  + ++  + +N L E+F     + ++HGRMS  +K
Sbjct: 455 HFLRDQLATGAQAYIVSPLIEESEALDVQNATDLYNELAEYFQPHYQVGLLHGRMSAEEK 514

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E  M  F+ G  +LL++TTVIEVG+D  +A++++I NA+ FGLAQLHQLRGRVGRG+  S
Sbjct: 515 EQAMHKFQRGEYQLLVSTTVIEVGVDNPNATVMLIYNADRFGLAQLHQLRGRVGRGDRQS 574

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+LL  P  + +   R+  +  T DGF++A+ D++ R  G++LG KQSGMP+F +  P 
Sbjct: 575 YCLLLADPK-TDDGKQRMKTMVETNDGFVVAQRDMELRGSGDVLGSKQSGMPEFKVGDPV 633

Query: 651 LHDSLLEIARKDAKHIL 667
               +L++AR+DA  +L
Sbjct: 634 GDLKMLQVARQDAADLL 650


>gi|256847363|ref|ZP_05552809.1| ATP-dependent DNA helicase RecG [Lactobacillus coleohominis
           101-4-CHN]
 gi|256716027|gb|EEU31002.1| ATP-dependent DNA helicase RecG [Lactobacillus coleohominis
           101-4-CHN]
          Length = 676

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 236/671 (35%), Positives = 372/671 (55%), Gaps = 30/671 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P+ST RGVG K +  L+ +            DLL Y PS + D  + P   E +
Sbjct: 1   MKSLQDPVSTIRGVGPKTAEALTTL------GIQTVEDLLTYFPSRYDD--FAPTDLETA 52

Query: 66  EERI-VTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           +++  VTI G I      S F  ++ R  +++++    G   +   Y     LK      
Sbjct: 53  KDKQKVTIHGTIVSEPVMSRFGYRRTRLGFRVMV----GHAVVQVVYFNQPYLKKQAVMD 108

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           + +T+ G     +  I       +  N QD     + A+Y     +     +K+I  A  
Sbjct: 109 QDVTIMGTWNASRQEI---QGTKLLTNQQDQE---MGAIYPANKHVHQATLRKLIKIAYH 162

Query: 181 RLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
               V+   +   L Q+     + +   +IH+    KD      AR   AY+E    Q+ 
Sbjct: 163 NYANVIATLLPISLRQRYQ---LLDRRTMIHDMHFPKDGSAARAARRTAAYEEFFLFQLR 219

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L  +R+  +++ G  I    +  +  ++ IPF  T +Q+  + +I +D+ Q  +M R+LQ
Sbjct: 220 LQSIRRANRQKDGNQILYNNQELRDFIKTIPFELTGAQKRVVNEICRDLRQPYQMNRLLQ 279

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA IA+ A V AG QA +MAP  ILA QH + + K    T + + ++TG+M
Sbjct: 280 GDVGSGKTIVAAIAINAVVIAGYQAALMAPTEILAAQHAQKLAKVFVGTHVNIGLLTGSM 339

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +R+ L+ I  G  ++IIGTHAL Q+ + Y  L L I+DEQHRFGV QR +L  K  
Sbjct: 340 NTRQKRQMLKGIKDGSINLIIGTHALIQEQVDYANLGLAIIDEQHRFGVNQRQQLRMKGV 399

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P VL MTATPIPRTL +TS G++D+S I E PAGR+PIKT  +  N+ D+ ++ LK  L
Sbjct: 400 HPDVLAMTATPIPRTLAITSYGEMDVSIIDELPAGRQPIKTTWLKSNQADQALQFLKGQL 459

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSF 537
           ++G + Y + P IE+ +  + ++  + +    E+F     + ++HGRM +  KE VM  F
Sbjct: 460 AQGAQVYVVSPLIEQSETLDVQNATDLYQEFVEYFAPQYQVGLLHGRMDNEQKEQVMQDF 519

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++   ++++ATTVIEVG+D  +A++++I +A+ FGLAQLHQLRGRVGRG++ S C+L+  
Sbjct: 520 QDNKIQVMVATTVIEVGVDNPNATVMLIYDADRFGLAQLHQLRGRVGRGQQQSYCLLIAD 579

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           P  +++   R+  +  T DGF++A+ DL+ R  G++LG KQSG+P F +  P     +L+
Sbjct: 580 PK-TEDGVKRMQTMVETNDGFVVAQRDLELRGSGDVLGNKQSGVPDFKVGDPVADLKMLQ 638

Query: 658 IARKDAKHILT 668
           IAR DA +++ 
Sbjct: 639 IARSDAANLIN 649


>gi|291563511|emb|CBL42327.1| ATP-dependent DNA helicase RecG [butyrate-producing bacterium
           SS3/4]
          Length = 684

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 232/669 (34%), Positives = 375/669 (56%), Gaps = 30/669 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFID-LLFYHPSSFIDRHYRPK-ISEISEERIV 70
           + T +G+G+K +    K+         R ID LL Y+P  + D +  PK I E+SE+   
Sbjct: 7   IETLKGIGEKTAKLFEKV-------GIRTIDDLLHYYPRGY-DTYGEPKAIGELSEDETG 58

Query: 71  TITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           T+ G++ S  +   +      +  ++D TG++ L++++     LKN           G++
Sbjct: 59  TVEGFLKSGATGVHVNGLSIVQATISDMTGKLRLVWYH--MPYLKNTLRPDSHFIFRGRV 116

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            + KN + M  P      + +     +  VY+   GL   +    + +AL+   +  +++
Sbjct: 117 IRKKNGLTMEQPQMFKPEAYEELLSSMRPVYAQTKGLGNKMITSAVEQALAFRTLERDYL 176

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQF 247
              L           A   IH P   ++ ++   AR+RL YDE       LL +R  K+ 
Sbjct: 177 PAGLRIANELAEYNFAIEHIHFPSNEEELKF---ARKRLVYDEFF---FFLLAVRHLKEK 230

Query: 248 KKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           ++ +  P ++E +   +K+L ++P+  T +Q   ++++L+D+   + M R++QGDVGSGK
Sbjct: 231 RQNVQSPFHMEKQDECRKLLADLPYRLTNAQLRTLEEVLRDLKSGSVMNRLIQGDVGSGK 290

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI----KKYTQNTQIIVEIITGNMPQA 362
           T++A++A+ AA E G Q  +M P  +LA+QH+E +    +K+  + ++I  ++TG+M   
Sbjct: 291 TIIAVLALLAACENGYQGALMVPTEVLARQHFESVTELFEKHGVDKKVI--LLTGSMTAK 348

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R A E++A  +A IIIGTHAL Q+ I Y  L LVI DEQHRFGV QR     K   PH
Sbjct: 349 EKRIAYEKVASHEADIIIGTHALIQEKIVYDNLALVITDEQHRFGVAQREMFGNKGQMPH 408

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++  +        ++  +  G
Sbjct: 409 VLVMSATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVDKSYRPRAYRFIENEVKNG 468

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++AY ICP +EE +  +  +V++    L ++     +  +HG+M   +K  +M+ F  G 
Sbjct: 469 RQAYVICPMVEESEMIDAENVLDYTKILRQNLPGIRVEYLHGKMKGKEKNKIMEEFAAGE 528

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG++ S CI++ +   +
Sbjct: 529 IQVLVSTTVIEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGDKQSYCIMV-NASGN 587

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           K    RL VL  + DGF IA EDLK R  G+I GI+QSG  +F +A        L+   +
Sbjct: 588 KEKNRRLDVLNKSNDGFYIASEDLKLRGPGDIFGIRQSGDLEFQLADIYTDAVTLKKVSE 647

Query: 662 DAKHILTQD 670
           D   +L QD
Sbjct: 648 DVNRLLEQD 656


>gi|89902448|ref|YP_524919.1| ATP-dependent DNA helicase RecG [Rhodoferax ferrireducens T118]
 gi|89347185|gb|ABD71388.1| ATP-dependent DNA helicase RecG [Rhodoferax ferrireducens T118]
          Length = 747

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 245/750 (32%), Positives = 368/750 (49%), Gaps = 109/750 (14%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P    PL  P    R +G +                 R IDL  + P  + D     ++S
Sbjct: 12  PQLPKPLTGPQKALRKLGLE-----------------RAIDLALHLPLRYEDETRIERLS 54

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           E+ E  +  + G ++ H   +L   R   + L+DGT +  LL F+      +     G +
Sbjct: 55  EVREGEVAQVEGVVT-HCEVKLSGHRQLLVTLDDGT-DTCLLRFFTFYPSSQKALAVGNR 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTG----------LSVDL 170
           I V G++K     + M+HP +     +      P+   V  LP               +L
Sbjct: 113 IRVRGEVKGGFGGLTMMHPAFKSAGGELAVALTPIYPTVAGLPQAYLRRAVQGGVARAEL 172

Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARE 226
              + +E L  + + P W            ++  A   +HNP      A   + + PA +
Sbjct: 173 SDTVPLENLCEIGLQPSW------------NMRNALLFLHNPTPEVALATLQDHSHPAWQ 220

Query: 227 RLAYDELLAGQIALLLMRKQ------------------------FKKEIGIPINVEGKIA 262
           RL  +ELLA Q++ L  +++                         +++  +   + G + 
Sbjct: 221 RLKAEELLAQQLSQLQAKRERARLRAPVLHSQALDDLVDDAHAAGRRDARLKPGLPGSLR 280

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            ++L  +PF  T +Q     +I +D+++   M R+LQGDVGSGKT+VA +A A  ++AG 
Sbjct: 281 NRLLATLPFQLTAAQHRVSAEIARDLARPVPMHRLLQGDVGSGKTVVAALAAAICIDAGW 340

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  +MAP  ILA QH+  +  + +   I V  +TG+     RR+ L  IA G+A ++IGT
Sbjct: 341 QCALMAPTEILATQHFAKLVSWLEPLGIRVAWLTGSQKAKERREMLALIASGEAGLVIGT 400

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------------------- 420
           HA+ QD +Q+  L L I+DEQHRFGV QRL L  K +A                      
Sbjct: 401 HAVIQDKVQFKNLALAIIDEQHRFGVAQRLALRSKLSAQTDHPELVEGPAAASSLRQAQD 460

Query: 421 -----------PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
                      PH+L+MTATPIPRTL ++   D+D+S I E P GR PI T ++   R +
Sbjct: 461 QPSSVRTVGLEPHLLMMTATPIPRTLAMSYYADLDVSTIDELPPGRTPIITKVVNDARRE 520

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDI 528
           EVI R++  L  G++ YW+CP IEE +  +  +  E    L      + + ++H RM   
Sbjct: 521 EVIARIRAQLDAGRQIYWVCPLIEESEALDLSNATETHAQLSAALPGAMVGLLHSRMPVA 580

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +K++VM  F +G   LL++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG  
Sbjct: 581 EKKAVMSLFTSGRMGLLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAA 640

Query: 589 ISSCILLYH----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
            S+C+LLY     P LS+ +  RL  +  T DGF IA  DL+ R  GE LG +QSG    
Sbjct: 641 ASACVLLYSTGDAPRLSETARARLKAMAETHDGFEIARRDLEIRGPGEFLGARQSGAAML 700

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLT 674
             A      +LL+ AR+ A  +L Q P L 
Sbjct: 701 RFADLATDTALLQWARQLAPVMLDQHPALA 730


>gi|217961275|ref|YP_002339843.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH187]
 gi|229140501|ref|ZP_04269056.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST26]
 gi|217065342|gb|ACJ79592.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH187]
 gi|228643062|gb|EEK99338.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST26]
          Length = 682

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 231/663 (34%), Positives = 377/663 (56%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +   L + K  P   EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPDGL---LSRYKLLPRY-EALRALHFPTGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +  +  QK +  +PF  T +Q   + +I++DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSEELQKFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++    
Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|303241725|ref|ZP_07328222.1| ATP-dependent DNA helicase RecG [Acetivibrio cellulolyticus CD2]
 gi|302590726|gb|EFL60477.1| ATP-dependent DNA helicase RecG [Acetivibrio cellulolyticus CD2]
          Length = 691

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 242/643 (37%), Positives = 366/643 (56%), Gaps = 24/643 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99
           D++ Y P  + DR    KI+E+ +       G I+   S Q + R+    YK+L+ D TG
Sbjct: 35  DIITYFPRDYEDRSRLKKINELIDGESCAFEGIIASKVS-QHRFRKGLTLYKVLIKDETG 93

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEA 158
            IT  +F +    +  V   G +    G+I      + +  P Y  H+  +  N   I  
Sbjct: 94  AITASWFNQ--HYIGKVLRIGERFIFFGRISGRYKNLEVQSPVYEKHDIGEARNVLKIVP 151

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VY     L+ +  +  I  AL  +   L +++ K +L +     I  +   IH P+  +D
Sbjct: 152 VYPSTADLTQNTIRATISSALEMVGGKLEDFLPKSILSEHQLSEINYSIQQIHFPKSDED 211

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKS 276
           F+    AR RL ++EL   Q+ LL ++K F+K+  GI      ++    ++ +PF  T +
Sbjct: 212 FK---NARYRLVFEELFLLQLCLLSVKKSFEKDKKGIEFKNVPEM-DDFIKMLPFKLTNA 267

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+   ++I +DM   N M R++QGDVGSGKT+VA++A+  A+  G Q  +M P  ILA+Q
Sbjct: 268 QKKVFEEIEKDMESNNVMNRLVQGDVGSGKTIVAVLALFKAIRNGYQGALMVPTEILAEQ 327

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY+ I +      I   ++TG+  +  + K LE I  G+  I+IGTHAL +D+I++  L 
Sbjct: 328 HYKSISELMGRYDINTALLTGSQTKKQKTKILEEIKSGEVQIVIGTHALIEDNIEFKNLG 387

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV+QR  L++K   P  ++MTATPIPRTL L   GD+DIS I E P GRK
Sbjct: 388 LVITDEQHRFGVRQRSLLSKKGEDPDAIVMTATPIPRTLALILYGDLDISIIDELPPGRK 447

Query: 457 PIKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKESNFRSVVERFNSL-H 511
           P+KT   P++  D + ER+   +     +G++ Y +CP +EE +E N +S V+    +  
Sbjct: 448 PVKTY--PVD--DGMRERINNFIIKEVRQGRQVYIVCPLVEESEEINAKSAVQHAEKIAK 503

Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           + F    + +I+G+M   DKE VM SF  G   +L++TTVIEVG++V +ASI++IENAE 
Sbjct: 504 DDFKDLRVGLIYGKMKAKDKEEVMRSFVGGEIDILVSTTVIEVGVNVPNASIMVIENAER 563

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FGLAQLHQLRGRVGRGE  S CI LY    ++    R+ +++ T DGF+I+E+DL  R  
Sbjct: 564 FGLAQLHQLRGRVGRGEYQSHCI-LYSEGKTEVCRERMKIMQKTNDGFIISEKDLDLRGP 622

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           GE  G +Q G+P+  IA       +L+ A++ A  ++  D DL
Sbjct: 623 GEFFGTRQHGIPELKIANLYEDIDILKKAQEAAITLINDDKDL 665


>gi|116626790|ref|YP_828946.1| ATP-dependent DNA helicase RecG [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229952|gb|ABJ88661.1| ATP-dependent DNA helicase RecG [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 699

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 228/651 (35%), Positives = 358/651 (54%), Gaps = 18/651 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS--QHSSFQLQKRRPYKILLNDGTGE 100
           DLL Y P  + DR     + +++   + T+   +   + S F+ +    ++    D +  
Sbjct: 31  DLLGYVPFRYEDRSNMKPVGQLAPGEMATVIAEVRSVKMSGFKRRSLGMFEARFTDASRA 90

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIK--KLKNRIIMVHPHYIFHNSQD------VN 152
           I +  ++     L NVF EG K+ + GK++       + M+HP +   +  D      ++
Sbjct: 91  ILVGKWFHGG-YLANVFAEGMKVALFGKVEFDSYAGELTMLHPEFEILSGDDDEGEAALH 149

Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              +  +Y     L+  +F+ +I   L  +  L + + + L  +   P    A   IH P
Sbjct: 150 VGRVVPIYEGAGKLTTKIFRTLIHRILGTIEPLDDALPQFLKDRLKMPDRWRAVQDIHFP 209

Query: 213 RKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
               D      + SPA+ RL ++E    +  + L R + +   GI   +  ++ ++I   
Sbjct: 210 PPDSDLRLLNAFRSPAQFRLIFEEFFWLECGVALKRSKARMMPGIAFELNERVREQIKAM 269

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF PT +Q+  +K+I  DM+  + M R+LQGDVGSGKT+VA  A   A+E G Q  ++A
Sbjct: 270 LPFKPTGAQKRVLKEIAGDMAAAHPMNRLLQGDVGSGKTIVAAEAAVIAIENGYQVAVLA 329

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA QH    K+  +       ++TG+     + +  + +A G   + IGTHAL Q+
Sbjct: 330 PTEILAAQHSFTFKRIFEKLGYPTMLLTGSFSAREKSQMKKLLAEGLVKVAIGTHALIQE 389

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +++ KL L I+DEQHRFGV QRL L +K   P +L+MTATPIPRTL +T  GD+D+S I
Sbjct: 390 DVEFKKLGLAIIDEQHRFGVLQRLGLAKKGATPDILVMTATPIPRTLAMTLYGDLDVSII 449

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            E P GRKPI T     +RI++V+  +K  + EG++AY + P IEE +    ++  + + 
Sbjct: 450 DEMPPGRKPIVTKHSTSDRIEQVLSFVKKQIDEGRQAYVVYPVIEESETQAMKAAQKEYE 509

Query: 509 SLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            L +     IA+  +HGR+   +KE+VM  FK+G  K+L++TTVIEVG+DV +AS++++E
Sbjct: 510 HLSKEVFPDIAVGLMHGRLGADEKEAVMQRFKDGLIKILVSTTVIEVGVDVPNASVMVVE 569

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
            AE FGL+QLHQLRGRVGRG E S CIL+    ++  +  R+  L  + DGF I+E DLK
Sbjct: 570 QAERFGLSQLHQLRGRVGRGAEQSYCILVTE-KMNDTARERIRTLVESTDGFYISEMDLK 628

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            R  GE  G KQSG+P   +A       +LEIAR++A   + + P    +R
Sbjct: 629 LRGPGEFFGTKQSGLPSLRVANILRDAEILEIARREAIDFIARPPSEEDLR 679


>gi|300811693|ref|ZP_07092168.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497320|gb|EFK32367.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 679

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/673 (34%), Positives = 369/673 (54%), Gaps = 26/673 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +F P++  +GVG K +  L  +            DLLFY P  + +    P + ++ + +
Sbjct: 7   IFRPVTALKGVGAKTAEALQSL------GIYSIYDLLFYFPYRYDELENLP-LDQLEDGQ 59

Query: 69  IVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            V + G ++ +   + F   K R  +K+ ++    +I ++ F+ +  + K +   G++I 
Sbjct: 60  KVMLKGIVATNPYQNYFGYHKSRVSFKLRIDH---DIIMVNFFNQPWLTKQLSV-GQEIA 115

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           V GK   L+ + +  +      NS D   P    +YS+   +     + +I  A++  + 
Sbjct: 116 VYGKYD-LRKQSLSAYKLLANKNSDDGMAP----IYSVNRQIKQKKLQTMIDLAIAESMD 170

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            +   + +DL +     +  +    +H+P   KD      AR    + E    Q+ L LM
Sbjct: 171 EMGNAVPEDLRKHYRLMADQDLVIAMHHP---KDLTEAKEARRSAVFREFFLFQMQLALM 227

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
             Q K   G   + + +   K+ +++PF+ +  Q+  I +I  DM    +M R+LQGDVG
Sbjct: 228 SSQNKSHSGYAKHYDLEEIGKLTKSLPFALSPDQKKVINEIFADMFVDQQMQRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ A+  AV AG QA +M P  ILA QHY  I    ++  + V ++TG+     
Sbjct: 288 SGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTKTME 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+  + +A G  +++IGTHAL Q+ + + KL LVI+DEQHRFGV QRL L  K   P +
Sbjct: 348 RREIYKELADGSINVVIGTHALIQEQVAFKKLGLVIIDEQHRFGVVQRLALINKGDRPDI 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPR+L LT  GD  +S+I   PAGRKPIK+     +++DEV   ++  L+EG 
Sbjct: 408 LAMTATPIPRSLALTVYGDTALSEIRHLPAGRKPIKSYWKTSSQLDEVYSLMRQQLAEGF 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I E +  +  +     + L   F    + ++HG+M+  DKE +MD F  G  
Sbjct: 468 QIYAVTPLISESETIDLENAEALHDRLAGEFPDQEVVLLHGKMAAADKEQIMDRFAAGEV 527

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ T+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG+  S C+ L  P  ++
Sbjct: 528 DILVTTSVIEVGVDVANANLMVIFDADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-TE 586

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F          ++ +AR +
Sbjct: 587 AGKQRMKIVAETNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRTGSVVSDYQVMVVARDE 646

Query: 663 AKHILTQDPDLTS 675
           AK I+  DPDL +
Sbjct: 647 AKRIVQADPDLKA 659


>gi|188995477|ref|YP_001929729.1| ATP-dependent DNA helicase RecG [Porphyromonas gingivalis ATCC
           33277]
 gi|188595157|dbj|BAG34132.1| ATP-dependent DNA helicase RecG [Porphyromonas gingivalis ATCC
           33277]
          Length = 698

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 239/681 (35%), Positives = 379/681 (55%), Gaps = 22/681 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI- 64
           ++ L   ++   GVG K +  L + I         ++DLL Y P  ++DR     I EI 
Sbjct: 1   MDILSTKITYLTGVGPKRAEVLKEEIEVRT-----YLDLLHYFPFRYVDRSRFYAIREIR 55

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           S+   + + G +   S     +R+      +DGTG I L++F +  + +++   EGR+  
Sbjct: 56  SDMPYIQLRGVLRNFSEVGEGRRKRLTATFSDGTGSIELVWF-KGIKYIRDKLQEGRRYI 114

Query: 125 VTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL- 182
           V GK     +   + HP       ++ V   L    ++     S+ L  K + + L  L 
Sbjct: 115 VFGKPVFFASGYNIAHPEIDAEEKAEQVAGGLTPIYHTTERMKSMGLGSKQLQQLLYVLL 174

Query: 183 ----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
                 L E +   +L    F S  EA   IH P+     E    AR RL ++EL   Q+
Sbjct: 175 NQVSATLTETLPPYILSSYGFVSYQEAIRQIHFPQGVAQLE---AARTRLKFEELFYVQL 231

Query: 239 ALLLMRKQFKKEI-GIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            L+  + + K    GI     G +     + ++PF  T +Q+  +++I QD    ++M R
Sbjct: 232 HLIGSKLERKARFQGIVFAQVGALFNTFYKEHLPFELTGAQKKVVREIRQDTLSGHQMNR 291

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVAL++M  A++ G QA +MAP  ILA+QH+  + +  +   I V ++ 
Sbjct: 292 LVQGDVGSGKTLVALLSMLLALDNGCQACLMAPTEILARQHHHTLSELLRPLGIEVGLLI 351

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+     R + L R+A G   I++GTHAL +  + +++L + ++DEQHRFGVQQR +L +
Sbjct: 352 GSCTARQRERLLPRLADGSLSIVVGTHALLEQGVAFHRLGMAVIDEQHRFGVQQRARLWE 411

Query: 417 KA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
           K   T PH+L+M+ATPIPRTL +T  GD+DIS I E P GRKPI+T+    N +  V   
Sbjct: 412 KNLDTLPHILIMSATPIPRTLAMTLYGDLDISIIDELPPGRKPIQTLHHFDNDMAPVFRF 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESV 533
           L+  L+ G++ Y + P IE  + ++ +++ + F      F    + ++HG+M   +KE+ 
Sbjct: 472 LRSQLAAGRQVYVVYPMIEGSETTDLKNLEDGFELFSSIFPDEGVTMVHGKMKAKEKEAR 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++L+ATTVIEVG++V +A+++++ENA+ FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MADFVSGRSRILLATTVIEVGVNVPNATVMVVENADRFGLSQLHQLRGRVGRGGEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELH 652
           L+      ++S  R+ V+  T DGF IAEED++ R  G++ G +QSG    L IA P   
Sbjct: 592 LITGTKTGEDSRRRIQVMVETNDGFEIAEEDMRLRGFGDLEGTRQSGRQISLRIANPARD 651

Query: 653 DSLLEIARKDAKHILTQDPDL 673
             L+ ++R  A+ +L +DP+L
Sbjct: 652 TELIALSRSIAEQLLERDPEL 672


>gi|253583420|ref|ZP_04860618.1| ATP-dependent DNA helicase [Fusobacterium varium ATCC 27725]
 gi|251833992|gb|EES62555.1| ATP-dependent DNA helicase [Fusobacterium varium ATCC 27725]
          Length = 686

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 226/605 (37%), Positives = 358/605 (59%), Gaps = 14/605 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEI-SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           DL +Y P ++ DR    KI ++  +E +V     ++  +       +  K    D TG I
Sbjct: 39  DLFYYFPRAYDDRTNIMKIGDLRGDEYVVLKATLLTVSAPPTRSGLKMVKATATDNTGII 98

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160
            L++F  +   L+     G +    G+IK+      +V+P + +  N Q +    I  +Y
Sbjct: 99  ELVWF--QMPYLRKTLKIGEEYIFIGQIKR-GYVYQLVNPEFKLGSNQQKLEAGEILPIY 155

Query: 161 SLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           S    +  +  +K++ EA+ S+L +  E I +++L+K    +  +A   IH P  +K+ E
Sbjct: 156 STSKEMPQNTLRKLMKEAVKSKLYIFQENIPEEILKKYKVMNREQAMKEIHFPTNSKNLE 215

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK--IAQKILRNIPFSPTKSQ 277
               A+ R A +ELL  ++ +L  R +   +      +E K  + ++ L N+ FS TK+Q
Sbjct: 216 ---EAKRRFAIEELLVLEMGILQKRFEMDSQNTSKYELEDKKTLVKQYLENLTFSLTKAQ 272

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +  I +I +D+S    + R++QGDVGSGKT+V+++ +   VE   Q V+MAP  ILA QH
Sbjct: 273 KKVITEIYRDLSNGRIINRLIQGDVGSGKTIVSMVLLLYMVENSYQGVLMAPTEILAVQH 332

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y  +K   +   + VE++TG+     ++K L+ I  G+  I+IGTHAL ++++++ +L L
Sbjct: 333 YLSVKDKFEKLGVRVELLTGSFKGKAKQKLLDSIKEGEVDIVIGTHALIEENVEFERLGL 392

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DEQHRFGV QR  L  K    ++++M+ATPIPR+L L+  GD+D+S I E P GRKP
Sbjct: 393 IIIDEQHRFGVVQRKLLRDKGVLANLVVMSATPIPRSLALSIYGDLDVSVIDELPPGRKP 452

Query: 458 IKT-VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           IKT  I  I+    + E +   LS+G++AY++ P IEE ++   +S  E    + ++   
Sbjct: 453 IKTKWIATIDETKTMYEFIGKKLSQGRQAYFVAPLIEESEKLAAKSTEELLEEVSKYLPE 512

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             I ++HGRM + DK+ +M+SFKN    ++++TTVIEVG+DV +A++++I NAE FGL+ 
Sbjct: 513 YRIGVLHGRMKNADKDEIMNSFKNKELDIMVSTTVIEVGVDVPNATVMVINNAERFGLSA 572

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRGE  S C L+     +  S +RL V++ T+DGF IAEEDLK RK GEI G
Sbjct: 573 LHQLRGRVGRGEYQSYCFLVSRTE-NAVSKSRLQVMEETQDGFKIAEEDLKLRKSGEIFG 631

Query: 636 IKQSG 640
            KQSG
Sbjct: 632 TKQSG 636


>gi|57233949|ref|YP_181980.1| ATP-dependent DNA helicase RecG [Dehalococcoides ethenogenes 195]
 gi|57224397|gb|AAW39454.1| ATP-dependent DNA helicase RecG [Dehalococcoides ethenogenes 195]
          Length = 740

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 222/657 (33%), Positives = 361/657 (54%), Gaps = 33/657 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL+Y P+  +D     KIS++      TI   + Q     +  RR  + +L D TG + 
Sbjct: 70  DLLYYFPNRHLDYSRLKKISQLEAGSEQTIIANVWQSKVNYMGGRRSTEAVLGDDTGNMR 129

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVY 160
            ++F     M++N+    R + ++G++     R +   P +  +   +  ++   +  VY
Sbjct: 130 AVWF-NNPYMVRNLKPNAR-VVLSGRVSIFNGRPVFESPEWEELPDEADLIHTGRLVPVY 187

Query: 161 SLPTGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
            L  GL     ++++   +    P + +++ +D L++     +AEA    H P      E
Sbjct: 188 PLTAGLHQRSLRRLMKNFIDISTPGISDFLPEDTLKRTRLLPLAEAIRQAHFPDTE---E 244

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
               AR RLA+DEL   Q+ +L  +K+++++ G  + +        +  +PF  T +Q  
Sbjct: 245 LKDAARNRLAFDELFILQLGVLAKKKRWQEQTGRALKINLPAIDHFISQLPFKLTDAQTK 304

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            + DI  D+S+   M R+LQG+VGSGKT+VA+I++  A   G Q   MAP  ILA+QH++
Sbjct: 305 CLADIKADISKSVPMSRLLQGEVGSGKTIVAVISLFTAAANGLQGAFMAPTEILAEQHFK 364

Query: 340 FIKK---------------YT----QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            + +               YT     +  + V ++  +M  + +    E+I  G+  I I
Sbjct: 365 SVTRLFASIAKVSTLLDGVYTFEGLLDRPLRVALMISDMKSSQKDILKEKIKKGEIDIAI 424

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTHAL Q  I++  L L ++DEQHRFGV+QR  L  K   PH+L+MTATPIPRTL LT  
Sbjct: 425 GTHALIQKEIRFKSLGLAVIDEQHRFGVEQRSALRSKGLNPHILIMTATPIPRTLALTLY 484

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           G++D+S I E P GR+ IKT  +   + +     ++  +  G++A+ ICP +EE +    
Sbjct: 485 GELDLSVIDELPPGRQSIKTRWLKPEQRNSAYNFIRKQIEAGRQAFIICPLVEESEAIQA 544

Query: 501 RSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           ++    + +L       S +A++HGRM+  +KES+M  F  G   +L++T V+EVGID+ 
Sbjct: 545 KAATAEYETLSSEVFPESKVALLHGRMNAAEKESIMKHFNEGKMDILVSTPVVEVGIDIP 604

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A+++++E+A+ FGL+QLHQ RGRVGRG E S C+ L   P S     RLS++++T+DGF
Sbjct: 605 NATVMLVESADRFGLSQLHQFRGRVGRGTEQSYCMFLAENP-SLLGQERLSIIESTQDGF 663

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLT 674
            +AEEDL+ R  GE  G +QSG+P   +A   + D  LLE AR++A  +   DP+L 
Sbjct: 664 KLAEEDLRLRGPGEFFGTRQSGLPDLRMAS--ISDVGLLEQARREATRLFESDPELN 718


>gi|315187033|gb|EFU20790.1| ATP-dependent DNA helicase RecG [Spirochaeta thermophila DSM 6578]
          Length = 683

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 245/696 (35%), Positives = 372/696 (53%), Gaps = 38/696 (5%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
            L  + AP++T  G+G K +    K  I + G        DLL ++P  + DR     ++
Sbjct: 2   LLEDISAPITTLAGIGGKTARHFHKLGIRSVG--------DLLQHYPRDYEDRSTFTSLA 53

Query: 63  EI------SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNV 116
           E       +    +T+  YI + S+  L      +I +NDGT    L+ F R    L   
Sbjct: 54  EAHATGKATTVATITLMDYIGKPSNPVL------RIFINDGTELAALVCFGRN--FLSRK 105

Query: 117 FFEGRKITVTGKIK----KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFK 172
           F  G K+ V+G+ +    KL++   ++ P+          F  I  +Y     L   + +
Sbjct: 106 FSPGMKVFVSGQFEMRYGKLQSTRFIIEPY----TESPKEFGKILPIYPTTEDLPQTILR 161

Query: 173 KIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
             +  AL + LP+L + +   LL  +S P + EA   IH P    D +  + AR RL Y 
Sbjct: 162 SAVEAALRQYLPLLDDPLPPSLLAARSLPPLPEALAAIHFP---PDRDALTRARTRLIYQ 218

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           EL   Q+ ++    + K ++  P++    + +++ R++PF  T  QE  +++I  D +  
Sbjct: 219 ELFFLQVIVVRAAMKRKTQLQAPVHFPRTLQERLRRSLPFPLTPDQEKVLEEIYADTTSP 278

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R+LQGDVGSGKTLVAL+A    +EAG Q   M P  +LA QH E          + 
Sbjct: 279 RPMARLLQGDVGSGKTLVALLAALPYIEAGHQVAFMVPTELLALQHAETAHTLLSPFGVR 338

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
             ++ G +  A RR  L  I  G+  ++IGTH LF D + Y  L L I+DEQH+FGV QR
Sbjct: 339 TALLAGTLQPAARRTLLSAILRGEVDLVIGTHTLFSDDVAYRNLRLAIIDEQHKFGVSQR 398

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            +L +KA+ P +LLMTATPIPRT+ LT  GD+D+S I   P GRKP++T +  + + ++V
Sbjct: 399 ARLLEKASHPDLLLMTATPIPRTMALTLYGDMDMSTIKTMPPGRKPVRTHLAVLGKEEKV 458

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
              ++  L +G +AY++ P I E ++   R+       L   +    +A+IH R+ D +K
Sbjct: 459 YTWVEKELEKGHQAYFVYPLIGESEKLELRNAESMVEFLRRRYPRWKVALIHSRIPDEEK 518

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E +M  F  G  ++L+AT+VIEVG++V  A+ I+IE+AE FGLA LHQLRGRVGR +  S
Sbjct: 519 ERIMREFMQGKIRILVATSVIEVGVNVPTATCIVIEHAERFGLATLHQLRGRVGRSDRQS 578

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQP 649
              L+Y P L++ +  RL  +K T DGFLIAE+DL+ R  G++L G  Q+G  +  IA  
Sbjct: 579 YAFLVYSPDLTEEAKARLRTMKETTDGFLIAEKDLEIRGPGDLLDGTIQAGHLRLRIAHL 638

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                L+   RKD + +L +DP L       IR L+
Sbjct: 639 TRDAPLMHEVRKDVEALLARDPGLLRPEHTLIRTLI 674


>gi|42782947|ref|NP_980194.1| ATP-dependent DNA helicase RecG [Bacillus cereus ATCC 10987]
 gi|42738874|gb|AAS42802.1| ATP-dependent DNA helicase RecG [Bacillus cereus ATCC 10987]
          Length = 682

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 231/663 (34%), Positives = 377/663 (56%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +TVTGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTVTGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +   L + K  P   EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPDGL---LSRYKLLPRY-EALRALHFPSGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +  +  Q+ +  +PF  T +Q   + +I++DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSEELQEFIDALPFPLTGAQSRVVDEIMKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++    
Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|295104656|emb|CBL02200.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii
           SL3/3]
          Length = 686

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 234/673 (34%), Positives = 356/673 (52%), Gaps = 30/673 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID--RHYRPKISEISEERI 69
           P+   +GVG K +    K+            DLL ++P  +ID  + Y    +    E +
Sbjct: 14  PVRYLKGVGPKTAERFEKL------GIVTLADLLCHYPRRYIDFSKPYSIAEAPADTECV 67

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF-----YRKTEMLKNVFFEGRKIT 124
           V    +           RR  +I   D    + + +F      +K ++ +  +F+G    
Sbjct: 68  VKAEVFAKPGGRILPGGRRMERITAGDDVASLEITWFNNPYATQKLQLGQEYYFQG---I 124

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           VTG + + +    MV+P      ++ +     EAVY    GL+     + I + L    +
Sbjct: 125 VTGGMLRRQ----MVNPQ--VRTAEQIQAAPFEAVYPQTEGLTSSAISRCIRQLLPHAEL 178

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +  ++LQK      AEA   IH P      E  + AR RL Y+ELL  Q+ +  MR
Sbjct: 179 LPDPLPPEMLQKYRLLPKAEAVRAIHCPATE---EQAAAARRRLIYEELLVLQLGIGRMR 235

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            +     G P+           +++PF+PT +Q  A+++IL DM+    M R+LQGDVGS
Sbjct: 236 SRGAAVTGAPMRRADP--SPFWQSLPFAPTGAQRRAVEEILNDMAGDTAMNRLLQGDVGS 293

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA  A+ A + AG QA ++AP  ILA QH E + +      + V ++TG M  A R
Sbjct: 294 GKTLVAAAAIWACIRAGYQAALLAPTEILAAQHAEGLNRLLAPFGMRVALLTGGMKAAAR 353

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R  L  I   +A +++GTHAL  + +++ +L L ++DEQHRFGV+QR  L +KA  PH+L
Sbjct: 354 RTTLAAIRKDEADLVVGTHALMSEGVEFARLGLAVIDEQHRFGVRQRGALAEKAANPHLL 413

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPRTL L   GD+DIS + E P GR P+KT  I   R  ++   L   + +G++
Sbjct: 414 VMSATPIPRTLGLLIYGDLDISILDELPPGRTPVKTRCITGKRRQDLYRFLDSEIDKGRQ 473

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP IE+  +    +V   +  + +       + ++HG++   +K +VM+ FK G  
Sbjct: 474 VYLVCPAIEDVPDGGLNAVKTYYEDIAKALLPDRRVGLMHGKLKPKEKAAVMEDFKAGRL 533

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
             L++TTVIEVG+DV +AS+++IENAE +GL+ LHQLRGRVGRG   S C L+     S+
Sbjct: 534 DALVSTTVIEVGVDVPNASVMVIENAERYGLSALHQLRGRVGRGAAESWCFLVSD-NTSE 592

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               RL  L +T DGF +A+ DL+ R  G+  G +Q G+P   IA        L  A+ +
Sbjct: 593 AVQKRLKFLCSTTDGFAVAQYDLETRGPGDFFGSRQHGLPTLQIADLMNDTRTLHAAQSE 652

Query: 663 AKHILTQDPDLTS 675
           A  +L  DP L S
Sbjct: 653 AIALLAADPLLES 665


>gi|228922609|ref|ZP_04085909.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837038|gb|EEM82379.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 682

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 234/663 (35%), Positives = 378/663 (57%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G I      Q   ++  ++ +    G   IT + F R     K    E   +T+TGK 
Sbjct: 61  VEGKIHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +   L + K  P   EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPDGL---LGRYKLLPRY-EALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + A+  A  Q  +M P  ILA+QHY+ + +   +  I VE++T ++  A 
Sbjct: 288 SGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGIKVELLTSSVKGAR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|23098975|ref|NP_692441.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
 gi|22777203|dbj|BAC13476.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 676

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 241/679 (35%), Positives = 379/679 (55%), Gaps = 34/679 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G+K +  L+ +      N     D+L Y P  + D   +  + E+  +  VT
Sbjct: 5   PVTEVKGIGEKVAEQLATM------NIYTVEDMLEYFPYRY-DIFEKKPLHELIHDDKVT 57

Query: 72  ITGYISQHSSFQLQKRRPYKILLN---DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I G +    S     R+  ++      DG     ++F        K        IT+TGK
Sbjct: 58  IEGIVVHDPSLTFYGRKKSRLTFTVEVDGVAVKAVMF---NRSFAKKQITSQSWITLTGK 114

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPE 187
                +R+ +   +Y     ++ +   I+ +YS+    +   F+K+I   L   +  + E
Sbjct: 115 WDA--HRLQITVSNYQLGRMEEKS--AIKPIYSVKGDFTSYKFQKLISNTLKDSVTEIKE 170

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +    L +   PS   A   +H P   KD      AR R  Y+E L  Q+ + L RK+ 
Sbjct: 171 ILPATYLDQYKLPSRENAVKTMHFP---KDRVELKHARRRFIYEEFLLFQLKMQLFRKKH 227

Query: 248 KKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           ++   G   + + +     +++ PF  T +Q  A+K IL DM   +RM R+LQGDVGSGK
Sbjct: 228 RESTTGNRQDFDQEKLTSFIKSFPFKLTDAQNRALKQILNDMKDPHRMNRLLQGDVGSGK 287

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-YTQNTQIIVEIITGNMPQAHRR 365
           T VA I + A+V +G Q  +M P  ILA+QH++ +++ + +  +I   ++TG++    RR
Sbjct: 288 TAVAAICLYASVTSGQQGALMVPTEILAEQHFQSLQQMFGERAEIA--LLTGSVKGKKRR 345

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           +  E+I + +  I+IGTHAL Q  + +  L LVIVDEQHRFGV+QR  L  K   P VL 
Sbjct: 346 ELTEKIENQKIDIVIGTHALIQGDVFFKNLGLVIVDEQHRFGVEQRRVLRDKGLHPDVLF 405

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + P+GRK I+T+ +  N  D +++ ++  + EG++A
Sbjct: 406 MTATPIPRTLAITAFGDMDVSVIDQLPSGRKEIETLWVKANTFDRILDFVRKRVDEGEQA 465

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE  + + ++ VE ++ L  +++  I I  +HGR++  +KE VM  F     +
Sbjct: 466 YVISPLIEESDKLDIQNAVELYHQLEAYYSDDIRIGLMHGRLTANEKEDVMRQFAENKIQ 525

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTV+EVG++V +A+I+II +AE FGL+QLHQLRGRVGRGE+ S CIL+  P   + 
Sbjct: 526 VLVSTTVVEVGVNVPNATIMIIYDAERFGLSQLHQLRGRVGRGEKQSYCILIAEPK-GEI 584

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662
              R+ ++  T DGF ++E+DL+ R  G+  G KQSGMP+F +A   +HD   LE AR D
Sbjct: 585 GKERMRIMTETTDGFELSEQDLQLRGPGDFFGKKQSGMPEFKVADM-VHDYRALETARDD 643

Query: 663 AKHILT----QDPDLTSVR 677
           A  IL     ++ D   VR
Sbjct: 644 ASIILENNLLEEEDYQQVR 662


>gi|104774262|ref|YP_619242.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423343|emb|CAI98190.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 679

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/673 (34%), Positives = 369/673 (54%), Gaps = 26/673 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +F P++  +GVG K +  L  +            DLLFY P  + +    P + ++ + +
Sbjct: 7   IFRPVTALKGVGAKTAEALQSL------GIYSIYDLLFYFPYRYDELENLP-LDQLEDGQ 59

Query: 69  IVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            V + G ++ +   + F   K R  +K+ ++    +I ++ F+ +  + K +   G++I 
Sbjct: 60  KVMLKGIVATNPYQNYFGYHKSRVSFKLRIDH---DIIMVNFFNQPWLTKQLSV-GQEIA 115

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           V GK   L+ + +  +      NS D   P    +YS+   +     + +I  A++  + 
Sbjct: 116 VYGKYD-LRKQSLSAYKLLANKNSDDGMAP----IYSINRQIKQKKLQTMIDLAIAESMD 170

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            +   + +DL +     +  +    +H+P   KD      AR    + E    Q+ L LM
Sbjct: 171 EMGNAVPEDLRKHYRLMADQDLVIAMHHP---KDLAEAKEARRSAVFREFFLFQMQLALM 227

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
             Q K   G   + + +   K+ +++PF+ +  Q+  I +I  DM    +M R+LQGDVG
Sbjct: 228 SSQNKSHSGYAKHYDLEEIGKLTKSLPFALSPDQKKVINEIFADMFVDQQMQRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ A+  AV AG QA +M P  ILA QHY  I    ++  + V ++TG+     
Sbjct: 288 SGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTKTME 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+  + +A G  +++IGTHAL Q+ + + KL LVI+DEQHRFGV QRL L  K   P +
Sbjct: 348 RREIYKELADGSINVVIGTHALIQEQVAFKKLGLVIIDEQHRFGVVQRLALINKGDRPDI 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPR+L LT  GD  +S+I   PAGRKPIK+     +++DEV   ++  L+EG 
Sbjct: 408 LAMTATPIPRSLALTVYGDTALSEIRHLPAGRKPIKSYWKTSSQLDEVYSLMRQQLAEGF 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I E +  +  +     + L   F    + ++HG+M+  DKE +MD F  G  
Sbjct: 468 QIYAVTPLISESEMIDLENAEALHDRLAGEFPDQEVVLLHGKMAAADKEQIMDRFAAGEV 527

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ T+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG+  S C+ L  P  ++
Sbjct: 528 DILVTTSVIEVGVDVANANLMVIFDADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-TE 586

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F          ++ +AR +
Sbjct: 587 AGKQRMKIVAETNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRTGSVVSDYQVMVVARDE 646

Query: 663 AKHILTQDPDLTS 675
           AK I+  DPDL +
Sbjct: 647 AKRIVQADPDLKT 659


>gi|163814174|ref|ZP_02205566.1| hypothetical protein COPEUT_00328 [Coprococcus eutactus ATCC 27759]
 gi|158450623|gb|EDP27618.1| hypothetical protein COPEUT_00328 [Coprococcus eutactus ATCC 27759]
          Length = 678

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/662 (34%), Positives = 361/662 (54%), Gaps = 30/662 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           + T +G+G K +  +SK+            DLL Y+P ++I       I  +      ++
Sbjct: 7   IKTIKGIGDKTAAAMSKL------GIYTVSDLLMYYPRTYISYEDPVDIENLQTGMRQSV 60

Query: 73  TGYISQHSSFQLQKRRPYKILL---NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
              I  +S  +++K R   I +    D +G I L++F      L+N F  G++   +G++
Sbjct: 61  RVMI--NSRVEVRKVRGLTISIVYAKDFSGTIKLMWF--NCPFLRNFFHIGQEFVFSGEV 116

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
                 + M  P Y   +       + + VY++  G++    +K    AL     L +++
Sbjct: 117 SYKSGMMTMTQPEYYTPDKYSELTNVWQPVYTVTPGITSKTIQKAARNALPAASGLVDYL 176

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-- 247
            +D+L +     + EA   IH P      +    A +R+A+DE       +  ++  F  
Sbjct: 177 PEDVLSEYGIMDLPEAVASIHFPADEYHLKL---AVKRIAFDEFYGFISDMHRLKSDFAG 233

Query: 248 -KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            + E  I  + E    ++ +  + F+ T +Q +A++D+L+DMS  + M R++QGDVGSGK
Sbjct: 234 YRNECVISCDEE---VRRFIEKLSFTLTNAQMNAVRDMLEDMSSDHVMNRLIQGDVGSGK 290

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA + + AA  +G Q VIMAP  +LA QHY+ +    +   I V ++TG+M    +R 
Sbjct: 291 TIVAAVGLFAAAVSGWQGVIMAPTEVLAVQHYKELHAQFEPYGISVGLLTGSMTVKEKRL 350

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             + I +G   +I+GTHAL QD ++Y +L LV+ DEQHRFGV+QR KLT+K   PH L+M
Sbjct: 351 MYQDIKNGDVSVIVGTHALIQDKVEYNRLGLVVTDEQHRFGVKQREKLTEKGGHPHTLVM 410

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL +   GD+DIS I E PAGR PIK  ++  +        +   +S+G + Y
Sbjct: 411 SATPIPRTLAIIMYGDLDISVIDELPAGRIPIKNCVVDESYRKTAQSFIMKEVSKGHQVY 470

Query: 487 WICPQIEEKKE-SNFRSVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKN 539
            +CP +E  +   +  +V E    L E   S       +  +HG+M   +K +++D F N
Sbjct: 471 IVCPMVEASEVLDDVANVTEYTEELRETLRSQYGGDIQVTCLHGKMKADEKNAILDDFSN 530

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+  +L++TTVIEVGI+  +A+++++ENAE FGLAQLHQLRGRVGRG+  S CI +    
Sbjct: 531 GSISILVSTTVIEVGINNPNATVMMVENAERFGLAQLHQLRGRVGRGKLQSYCIFVSGKK 590

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             K++  RL VL+ + DGF IA EDLK R  G+  GI+QSG   F I     H  +L+ A
Sbjct: 591 -DKDTMERLEVLEKSNDGFYIAGEDLKMRGPGDFFGIRQSGEVMFKIGDIYNHADMLKAA 649

Query: 660 RK 661
           +K
Sbjct: 650 QK 651


>gi|52141640|ref|YP_085196.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
 gi|51975109|gb|AAU16659.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
          Length = 682

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/663 (34%), Positives = 375/663 (56%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP      LL +       EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LP----NGLLSRYKLLPRYEALRALHFPTGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +  +  Q+ +  +PF  T +Q   + +I++DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSEELQEFIDTLPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++    
Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  +++G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEINKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|17232281|ref|NP_488829.1| ATP-dependent DNA helicase RecG [Nostoc sp. PCC 7120]
 gi|17133926|dbj|BAB76488.1| DNA helicase [Nostoc sp. PCC 7120]
          Length = 822

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 230/650 (35%), Positives = 373/650 (57%), Gaps = 23/650 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99
           DLLFY+P   ID   +  I E+     VTI   + + + F   K +   IL   L D TG
Sbjct: 153 DLLFYYPRDHIDYARQVNIRELEAGETVTIVATVKKCNCFTSPKNQKLSILELILKDNTG 212

Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD 150
           +I +  F            E LK  +  G  +   G +K  K  + + +P   +  N  D
Sbjct: 213 QIKISRFSAGARFTSRAWQESLKRRYPVGSVLAACGLVKGTKYGLTLDNPELEVLANPGD 272

Query: 151 ----VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
               +    +  +YSL  G+   + ++ ++ AL     L + + K L +K     + +A 
Sbjct: 273 TIESLTMGRVVPIYSLTEGVMASMVRQAVLAALPAAVHLKDPLPKGLREKYGLMELKDAI 332

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKI 265
             IH P ++   +    AR RL +DE    Q+ LL  ++Q K  +    +  +GK+ +  
Sbjct: 333 ANIHFPDESATLQV---ARRRLVFDEFFYLQLGLLQRQQQAKAIQTSAILAPKGKLIENF 389

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF  T +Q+  + DIL D+ +   M R++QGDVGSGKT+VA++A+ AA+++G QA 
Sbjct: 390 YEILPFQLTGAQQRVLNDILNDLQKSAPMNRLVQGDVGSGKTVVAVVAILAAIQSGYQAA 449

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  +LA+QHY  +  +     + VE++TG+     RR+   ++  G+  +++GTHAL
Sbjct: 450 LMAPTEVLAEQHYRKLVSWFNLLHLPVELLTGSTKTVKRRQIHSQLETGELPLLVGTHAL 509

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            QD + + +L LV++DEQHRFGV+QR  L QK   PHVL MTATPIPRTL LT  GD+++
Sbjct: 510 IQDPVNFQRLGLVVIDEQHRFGVKQRALLQQKGEQPHVLTMTATPIPRTLALTIHGDMNV 569

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S+I E P GR+ I+T ++   +  +  + ++  +++G++ Y + P +EE ++ + RS VE
Sbjct: 570 SQIDELPPGRQKIQTTMLSGQQRPQAYDLIRREIAQGRQTYVVLPLVEESEKLDLRSAVE 629

Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
               L E       + ++HGRMS  +K+  +  F++   ++L++TTV+EVG+DV +A+++
Sbjct: 630 EHQKLQESVFPDFQVGLLHGRMSSAEKDEAITKFRDNETQILVSTTVVEVGVDVPNATVM 689

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +IENAE FGL+QLHQLRGRVGRG   S C+L+     S ++  RL VL+ ++DGF I+E 
Sbjct: 690 LIENAERFGLSQLHQLRGRVGRGAAQSYCLLM-SSSRSPDAQQRLKVLEQSQDGFFISEM 748

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           D++ R  GE+LG +QSG+P F +A     + +L +AR+ A+ ++  D  L
Sbjct: 749 DMRFRGPGEVLGTRQSGVPDFTLASLVEDEEVLLLARQAAEKVIEIDASL 798


>gi|218290485|ref|ZP_03494605.1| ATP-dependent DNA helicase RecG [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239506|gb|EED06701.1| ATP-dependent DNA helicase RecG [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 678

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 223/635 (35%), Positives = 352/635 (55%), Gaps = 21/635 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN----DGT 98
           DLL  +P  + +R  +P     + +R+   T         Q++ R    I+      DG 
Sbjct: 32  DLLHTYPFRYDERAEKPFPEWRNGDRV---TARAVVEGPVQVRWRGSKSIMTARVRVDGQ 88

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             +  L+F      L++   +GR + VTGK  +   R+++    +          P +  
Sbjct: 89  HPVVCLWF--SQHYLRSKLSDGRFVVVTGKWNETLRRLVVSETSF----DAVAQAPSLVP 142

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VY     +S     ++I++AL +    + E +   L++K    +  +A   +H P+  +D
Sbjct: 143 VYRASKDISTKAIHQLILKALEQYADQIAESLPYALVRKYRLWTHRDALFGMHRPKSLED 202

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
                 AR RL ++E L  QI L  +R + ++ +G    V        +  +P   T +Q
Sbjct: 203 ---VRQARRRLVFEEFLLFQIQLQWLRAKREEPVGRAQPVPDDALTAFVALLPGPMTDAQ 259

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             A +DIL+D+ +   M R++QGDVGSGKT VAL A  A   A GQ+ +MAP  ILA+QH
Sbjct: 260 RRACEDILRDLQRPVPMTRLIQGDVGSGKTWVALFACFAVHLARGQSALMAPTEILAEQH 319

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
               ++      + VE++TG++    R + L  +A G   + +GTHAL  + +++  L L
Sbjct: 320 ARLAQQLLGPAGVRVELLTGSVTGRERERVLAGLASGDVSLAVGTHALLSEGVEFRDLAL 379

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           ++ DEQHRFGV QR +L +K  AP VL+++ATPIPRTL L   GD+D+S + E P GR+P
Sbjct: 380 LVTDEQHRFGVAQRARLREKGRAPDVLMLSATPIPRTLALAIYGDMDVSILNELPKGRRP 439

Query: 458 IKTVIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           ++T+ +  +R DE + RL +  L+ G +AY + P IE  ++ +  SV E +  + EH   
Sbjct: 440 VQTIAVS-SRDDETVLRLIRRELARGHQAYIVAPAIEASEQDDVASVTELYERVREHLAG 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HGRM   DKE +M +F++G    L+ATTVIEVGIDV +A+++ I  AE FGLAQ
Sbjct: 499 FRVELLHGRMPSADKERMMRAFRDGEIHALVATTVIEVGIDVPNATVMAIYGAERFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S C+L+ H   S+ +  R+  +  T DGF IAE DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGPHRSYCLLI-HDASSEAARARIETMLQTNDGFEIAERDLELRGPGELFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           ++QSG+P+F +        ++E+AR++A  +L +D
Sbjct: 618 LRQSGLPEFALGDLARDYRIMEVAREEALALLRRD 652


>gi|324327752|gb|ADY23012.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 682

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/663 (34%), Positives = 375/663 (56%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+     LL +       EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPD----GLLSRYKLLPRYEALRALHFPSGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +  +  Q+ +  +PF  T +Q   + +I++DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSEELQEFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++    
Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|189462953|ref|ZP_03011738.1| hypothetical protein BACCOP_03655 [Bacteroides coprocola DSM 17136]
 gi|189430235|gb|EDU99219.1| hypothetical protein BACCOP_03655 [Bacteroides coprocola DSM 17136]
          Length = 699

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 236/670 (35%), Positives = 372/670 (55%), Gaps = 22/670 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74
            +GVG + +  L+K +N        F DLL Y P  ++DR     I EI      + + G
Sbjct: 12  LQGVGPQRAAILNKELNI-----YSFRDLLCYFPYKYVDRSRLYYIHEIDGNMPYIQLKG 66

Query: 75  YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
            +    +    ++R      +DGTG + L++F +  + +   +    +  V GK      
Sbjct: 67  KVLSFETMGEGRQRRLVGHFSDGTGIVDLVWF-QGLKFIMGKYKANEEYIVFGKPTIFNG 125

Query: 135 RIIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRL--PVLPE 187
           RI + HP         ++   ++  Y+       + L+    +K++      L   ++ E
Sbjct: 126 RINIAHPDIDPAQELTLSTMGLQPYYNTTEKMKRSNLNSHALEKLMKNLFGALQKEIIEE 185

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +   L+       + +A   IH P+     +    A+ RL ++EL   Q+ +L   K+ 
Sbjct: 186 TLSPQLVDHYRLMPLTDALYNIHFPQNP---DLLRRAQYRLKFEELFYVQLNILRYTKER 242

Query: 248 KKEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + +  G+     G+I      +N+PF  T +Q+  IK++ +DM    +M R+LQGDVGSG
Sbjct: 243 RNKFRGLVFGKVGEIFNTFYSQNLPFQLTGAQKRVIKEMRRDMGSGRQMNRLLQGDVGSG 302

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KTLVAL+ M  A++ G QA +MAP  ILA QHYE I ++     + VE++TG +    R 
Sbjct: 303 KTLVALMTMLIALDNGYQACMMAPTEILATQHYETICRFLAGMNVRVELLTGTVKGKRRE 362

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVL 424
             L+ +  G  HI+IGTHA+ +D++ +  L LV++DEQHRFGV QR KL  K T  PHVL
Sbjct: 363 TILKDLVTGDVHILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRAKLWAKNTCPPHVL 422

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL +T  GD+D+S I E P GRKPI+TV    NR   +   ++  + EG++
Sbjct: 423 VMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTVHQFDNRRASMYAFIRKQIQEGRQ 482

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           AY + P I+E ++ + +++ + +  + E F    ++ +HG+M   +K+  M  F     +
Sbjct: 483 AYIVYPLIQESEKMDIKNLEDGYMHICEEFPEYKVSKVHGKMKPAEKDEEMQRFLANETQ 542

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL+    L++ 
Sbjct: 543 IMVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCILVTGYKLTEE 602

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKD 662
           +  R+ ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R+ 
Sbjct: 603 TRKRIEIMVQTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQFVREI 662

Query: 663 AKHILTQDPD 672
           A+H+L  DP+
Sbjct: 663 AEHLLDADPN 672


>gi|30263858|ref|NP_846235.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Ames]
 gi|47778232|ref|YP_022668.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186705|ref|YP_029957.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Sterne]
 gi|65321183|ref|ZP_00394142.1| COG1200: RecG-like helicase [Bacillus anthracis str. A2012]
 gi|165873284|ref|ZP_02217892.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0488]
 gi|167636663|ref|ZP_02394953.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0442]
 gi|167642024|ref|ZP_02400255.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0193]
 gi|170689646|ref|ZP_02880827.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0465]
 gi|170709348|ref|ZP_02899763.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0389]
 gi|177655967|ref|ZP_02937119.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0174]
 gi|190566221|ref|ZP_03019140.1| ATP-dependent DNA helicase RecG [Bacillus anthracis Tsiankovskii-I]
 gi|196035896|ref|ZP_03103298.1| ATP-dependent DNA helicase RecG [Bacillus cereus W]
 gi|196047426|ref|ZP_03114638.1| ATP-dependent DNA helicase RecG [Bacillus cereus 03BB108]
 gi|218904985|ref|YP_002452819.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH820]
 gi|225865836|ref|YP_002751214.1| ATP-dependent DNA helicase RecG [Bacillus cereus 03BB102]
 gi|227813237|ref|YP_002813246.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. CDC 684]
 gi|228916492|ref|ZP_04080058.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928903|ref|ZP_04091935.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935169|ref|ZP_04097996.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947574|ref|ZP_04109864.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228986998|ref|ZP_04147124.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229092898|ref|ZP_04224032.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-42]
 gi|229123369|ref|ZP_04252573.1| ATP-dependent DNA helicase recG [Bacillus cereus 95/8201]
 gi|229157431|ref|ZP_04285509.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 4342]
 gi|229186095|ref|ZP_04313264.1| ATP-dependent DNA helicase recG [Bacillus cereus BGSC 6E1]
 gi|229603604|ref|YP_002868092.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0248]
 gi|254683437|ref|ZP_05147297.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721386|ref|ZP_05183175.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A1055]
 gi|254735893|ref|ZP_05193599.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Western
           North America USA6153]
 gi|30258502|gb|AAP27721.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Ames]
 gi|47551937|gb|AAT35402.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180632|gb|AAT56008.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Sterne]
 gi|164710969|gb|EDR16538.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0488]
 gi|167510023|gb|EDR85438.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0193]
 gi|167527914|gb|EDR90730.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0442]
 gi|170125743|gb|EDS94655.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0389]
 gi|170666391|gb|EDT17173.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0465]
 gi|172079911|gb|EDT65018.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0174]
 gi|190563140|gb|EDV17106.1| ATP-dependent DNA helicase RecG [Bacillus anthracis Tsiankovskii-I]
 gi|195991545|gb|EDX55511.1| ATP-dependent DNA helicase RecG [Bacillus cereus W]
 gi|196021734|gb|EDX60429.1| ATP-dependent DNA helicase RecG [Bacillus cereus 03BB108]
 gi|218539493|gb|ACK91891.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH820]
 gi|225787117|gb|ACO27334.1| ATP-dependent DNA helicase RecG [Bacillus cereus 03BB102]
 gi|227004793|gb|ACP14536.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. CDC 684]
 gi|228597271|gb|EEK54922.1| ATP-dependent DNA helicase recG [Bacillus cereus BGSC 6E1]
 gi|228626158|gb|EEK82907.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 4342]
 gi|228660145|gb|EEL15781.1| ATP-dependent DNA helicase recG [Bacillus cereus 95/8201]
 gi|228690520|gb|EEL44303.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-42]
 gi|228772776|gb|EEM21216.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228812094|gb|EEM58425.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824534|gb|EEM70339.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830710|gb|EEM76315.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843071|gb|EEM88153.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268012|gb|ACQ49649.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0248]
          Length = 682

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/663 (34%), Positives = 376/663 (56%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+     LL +       EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPD----GLLSRYKLLPRYEALRALHFPTGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K  ++   G    +  +  Q+ +  +PF  T +Q   + +I++DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSEELQEFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++    
Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  +++G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEINKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|331085071|ref|ZP_08334158.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408771|gb|EGG88236.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 685

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/674 (33%), Positives = 369/674 (54%), Gaps = 33/674 (4%)

Query: 13  LSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKIS--EISEER 68
           +   +G+G+K      K  +   G        DL+ Y P  +    Y P +S  EI E++
Sbjct: 7   VGELKGIGEKTEKLFQKLGVFTVG--------DLIRYFPRGY--DVYDPPVSIGEIQEQK 56

Query: 69  IVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           +  + G I  + + Q+  R  +     L D TG I ++++  +   L+N    G+ + + 
Sbjct: 57  VQAVRGMI--YGTLQVSSRGAQVTSGYLKDMTGTIKVVWY--RMPFLRNTLQNGQIVILR 112

Query: 127 GKIKKLKNRIIMVHPHYIFH--NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           G++   K   +M HP  IF   +S +     ++ +Y L  GL+ +   K + +AL  L +
Sbjct: 113 GRVVTKKGVRVMEHPE-IFSPADSYEKKLDTLQPIYPLTAGLTNNAVMKAVRQALEYLEL 171

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             E +   +  K        +   IH P++ ++F     ARERL ++E L   ++L  M+
Sbjct: 172 QKEILPATVRMKYHLAEYNFSVRGIHFPKEKQEF---YQARERLVFEEFLVFILSLRQMK 228

Query: 245 -KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            K+ +     PI+   +I +  L+ +P+  T +Q+   + + +DM+  + M R++QGDVG
Sbjct: 229 EKKERSRNQFPIHPSEEI-EAFLKKLPYELTNAQKKVWEQLQKDMAGTHTMARLIQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQ 361
           SGKT++A+++  +    G Q  +MAP  +LA+QH++ I +  +  +I   VE++TG+M  
Sbjct: 288 SGKTIIAVLSFMSVAFCGWQGAMMAPTEVLARQHFDSITEMFEQYEIPLKVELLTGSMTA 347

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +R A  RI  GQA II+GTHAL Q+ + Y  L LV+ DEQHRFGV+QR +   K   P
Sbjct: 348 KEKRLAYGRIESGQAQIIVGTHALIQEKVTYANLALVVTDEQHRFGVKQREQFAGKGELP 407

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H+L+M+ATPIPRTL +   GD+D+S I E PA R PIK  ++  +      + ++  ++E
Sbjct: 408 HILVMSATPIPRTLAIILYGDLDVSVIDELPANRLPIKNCVVDTSYRKTAYQFIRRQVAE 467

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKN 539
           G++ Y ICP +EE +     +V++    L       I +  +HG+M    K+ +M+ F  
Sbjct: 468 GRQCYVICPMVEESEHMEAENVIDYAEKLQGELGEDIIVDFLHGKMKQSQKDEIMERFGK 527

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L++TTVIEVGI+V +A++++IENAE FGLAQLHQLRGRVGRG   S CI +    
Sbjct: 528 NESQVLVSTTVIEVGINVPNATVMMIENAERFGLAQLHQLRGRVGRGNYQSYCIFMSGSK 587

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             K +  RL +L  + DGF IA EDLK R  G++ GI+QSG+  F +        +L+ A
Sbjct: 588 -GKETKERLEILNRSNDGFYIANEDLKLRGPGDLFGIRQSGLMDFRLGDVFQDAKILQRA 646

Query: 660 RKDAKHILTQDPDL 673
            + A  IL     L
Sbjct: 647 NEAADWILKNGKGL 660


>gi|228940943|ref|ZP_04103502.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973872|ref|ZP_04134448.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980462|ref|ZP_04140772.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis Bt407]
 gi|228779282|gb|EEM27539.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis Bt407]
 gi|228785897|gb|EEM33900.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818779|gb|EEM64845.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326941624|gb|AEA17520.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 682

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 232/663 (34%), Positives = 378/663 (57%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K    E   +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLTLDE--TVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +   L + K  P   EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPDGL---LGRYKLLPRY-EALKALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + A+  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A 
Sbjct: 288 SGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGAR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|258648960|ref|ZP_05736429.1| ATP-dependent DNA helicase RecG [Prevotella tannerae ATCC 51259]
 gi|260850563|gb|EEX70432.1| ATP-dependent DNA helicase RecG [Prevotella tannerae ATCC 51259]
          Length = 702

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 250/678 (36%), Positives = 377/678 (55%), Gaps = 39/678 (5%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74
            +GVG + +  LSK ++  +       DLL+  P  +IDR    +I  + E    V I G
Sbjct: 14  LKGVGPRRAELLSKELHIDSLG-----DLLYTFPFRYIDRSEVHEIQALQEGMPYVQIRG 68

Query: 75  -YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
            +IS     + +K+R    +  DGTG + +++F    + +K          + G  K   
Sbjct: 69  RFISFSEEGEGRKKR-ISAVFTDGTGYVDVVWFA-GLKYVKETLRYDETYLLLGTPKLFA 126

Query: 134 NRIIMVHPHY--IFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRLPV-- 184
            RI   HP    I  ++   N  L + VY         G +     K++  A + +    
Sbjct: 127 RRISFAHPELEKIAPDAPLQNLGL-QPVYHTTERMKKMGFTSKSMSKLMQAAFALIESTP 185

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE +    +QK     + +A    H P  +        A  RL ++EL   Q+ +L   
Sbjct: 186 LPETLPAWFVQKHQLMELTKALLTAHFPPSSAAL---PEALRRLKFEELFYLQLDILRYM 242

Query: 245 KQFKKEIGIPINVEG----KIAQKILR----NIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           K  +      ++V+G    K+    LR     +PF  T +Q+  I++I  D+    +M R
Sbjct: 243 KHRQ------LSVQGFCFPKVGNLFLRFFHERLPFELTGAQKRVIREIRNDVGSGRQMNR 296

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VAL+A   A++ G QA IMAP  ILA+QH   I  +  +  + V ++T
Sbjct: 297 LLQGDVGSGKTMVALMACLLALDNGFQACIMAPTEILAEQHLATITAFLGDLPLRVALLT 356

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-T 415
           G +    R++ L+ +A G   ++IGTH L + ++++  L L ++DEQHRFGV+QR +L T
Sbjct: 357 GIVKGKARQEILDGVADGSVQLLIGTHTLIEPTVRFLNLGLAVIDEQHRFGVKQRSQLWT 416

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +    PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPIKTV    +   ++ + L
Sbjct: 417 KNIRPPHILVMTATPIPRTLAMTVYGDLDVSIIDELPPGRKPIKTVHYYQDNSSQLYDGL 476

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           +  LS G++AY + P I+E  + + +++ + F SL E F+   I ++HG+M  I+KES M
Sbjct: 477 RYQLSLGRQAYVVYPLIKENAQMDLKALEQGFESLREVFSDMDIGVVHGQMRPIEKESEM 536

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G  K+L++TTVIEVG++V +AS+++IENAE FGLAQLHQLRGRVGRG   S CIL
Sbjct: 537 ARFVRGETKILVSTTVIEVGVNVPNASVMVIENAERFGLAQLHQLRGRVGRGATQSYCIL 596

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHD 653
           +    LSK+S  R+ ++ +T DGF IAE DLK R  G++ G  QSG+P  L IA      
Sbjct: 597 VTKRELSKDSRARIGIMVDTNDGFEIAEADLKLRGPGDLEGTAQSGLPFDLKIANIVRDG 656

Query: 654 SLLEIARKDAKHILTQDP 671
           +LL+ AR+ A+ I+  DP
Sbjct: 657 NLLQTAREAAEAIIEADP 674


>gi|30021943|ref|NP_833574.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 14579]
 gi|228960071|ref|ZP_04121735.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047542|ref|ZP_04193132.1| ATP-dependent DNA helicase recG [Bacillus cereus AH676]
 gi|229111326|ref|ZP_04240879.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock1-15]
 gi|229129131|ref|ZP_04258104.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-Cer4]
 gi|229146426|ref|ZP_04274797.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST24]
 gi|229152054|ref|ZP_04280249.1| ATP-dependent DNA helicase recG [Bacillus cereus m1550]
 gi|296504350|ref|YP_003666050.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis BMB171]
 gi|29897499|gb|AAP10775.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 14579]
 gi|228631403|gb|EEK88037.1| ATP-dependent DNA helicase recG [Bacillus cereus m1550]
 gi|228637059|gb|EEK93518.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST24]
 gi|228654368|gb|EEL10233.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-Cer4]
 gi|228672102|gb|EEL27393.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock1-15]
 gi|228723789|gb|EEL75144.1| ATP-dependent DNA helicase recG [Bacillus cereus AH676]
 gi|228799587|gb|EEM46540.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296325402|gb|ADH08330.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis BMB171]
          Length = 682

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 233/663 (35%), Positives = 378/663 (57%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K    E   IT+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TITITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +   L + K  P   EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPDGL---LGRYKLLPRY-EALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSAELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + A+  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A 
Sbjct: 288 SGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGAR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|118479077|ref|YP_896228.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis str. Al
           Hakam]
 gi|301055346|ref|YP_003793557.1| ATP-dependent DNA helicase [Bacillus anthracis CI]
 gi|118418302|gb|ABK86721.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis str. Al
           Hakam]
 gi|300377515|gb|ADK06419.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 685

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/663 (34%), Positives = 376/663 (56%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 11  PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 64  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 121

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 122 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 177

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+     LL +       EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 178 LPD----GLLSRYKLLPRYEALRALHFPTGQEDLK---QARRRFVYEEFFLFQLKMQTLR 230

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +  +  Q+ +  +PF  T +Q   + +I++DM+   RM R+LQGDVG
Sbjct: 231 KMERENSKGTKKEIPSEELQEFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVG 290

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++    
Sbjct: 291 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVR 350

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 351 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 410

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  +++G+
Sbjct: 411 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEINKGR 470

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 471 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 530

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 531 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 589

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 590 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 648

Query: 661 KDA 663
           +DA
Sbjct: 649 QDA 651


>gi|116514351|ref|YP_813257.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093666|gb|ABJ58819.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325126050|gb|ADY85380.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 679

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/673 (34%), Positives = 369/673 (54%), Gaps = 26/673 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +F P++  +GVG K +  L  +            DLLFY P  + +    P + ++ + +
Sbjct: 7   IFRPVTALKGVGAKTAEALQSL------GIYSIYDLLFYFPYRYDELENLP-LDQLEDGQ 59

Query: 69  IVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            V + G ++ +   + F   K R  +K+ ++    +I ++ F+ +  + K +   G++I 
Sbjct: 60  KVMLKGIVATNPYQNYFGYHKSRVSFKLRIDH---DIIMVNFFNQPWLTKQLSV-GQEIA 115

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           V GK   L+ + +  +      NS D   P    +YS+   +     + +I  A++  + 
Sbjct: 116 VYGKYD-LRKQSLSAYKLLANKNSDDGMAP----IYSINRQIKQKKLQTMIDLAIAESMD 170

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            +   + +DL +     +  +    +H+P   KD      AR    + E    Q+ L LM
Sbjct: 171 EMGNAVPEDLRKHYRLMADQDLVIAMHHP---KDLAEAKEARRSAVFREFFLFQMQLALM 227

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
             Q K   G   + + +   K+ +++PF+ +  Q+  I +I  DM    +M R+LQGDVG
Sbjct: 228 SSQNKSHSGYAKHYDLEEIGKLTKSLPFALSPDQKKVINEIFADMFVDQQMQRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ A+  AV AG QA +M P  ILA QHY  I    ++  + V ++TG+     
Sbjct: 288 SGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTKTME 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+  + +A G  +++IGTHAL Q+ + + KL LVI+DEQHRFGV QRL L  K   P +
Sbjct: 348 RREIYKELADGSINVVIGTHALIQEQVAFKKLGLVIIDEQHRFGVVQRLALINKGDRPDI 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPR+L LT  GD  +S+I   PAGRKPIK+     +++DEV   ++  L+EG 
Sbjct: 408 LAMTATPIPRSLALTVYGDTALSEIRHLPAGRKPIKSYWKTSSQLDEVYSLMRQQLAEGF 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I E +  +  +     + L   F    + ++HG+M+  DKE +MD F  G  
Sbjct: 468 QIYAVTPLISESEMIDLENAEALHDRLAGEFPDQEVVLLHGKMAAADKEQIMDRFAAGEV 527

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ T+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG+  S C+ L  P  ++
Sbjct: 528 DILVTTSVIEVGVDVANANLMVIFDADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-TE 586

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F          ++ +AR +
Sbjct: 587 AGKQRMKIVAETNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRTGSVVSDYQVMVVARDE 646

Query: 663 AKHILTQDPDLTS 675
           AK I+  DPDL +
Sbjct: 647 AKRIVQADPDLKA 659


>gi|332884646|gb|EGK04903.1| ATP-dependent DNA helicase RecG [Dysgonomonas mossii DSM 22836]
          Length = 698

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 249/684 (36%), Positives = 375/684 (54%), Gaps = 53/684 (7%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG K +  L+K IN  +       DLL+Y P  +IDR     I EI      + I G I
Sbjct: 14  GVGPKKAEILNKEINVFSVE-----DLLYYFPYKYIDRSRIYFIHEIDGNMPYIQIRGRI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
           +   +F   +++       DGTG I L            V+F+G K  +T K K     I
Sbjct: 69  TAFETFGEGRKKRLVAHFTDGTGFIDL------------VWFQGAKF-ITDKYKVNLPYI 115

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYS---LPTGL---------------SVDLFKKIIVEA 178
           +   P  +F +  ++  P I+   S    PTGL               +    +KI+  A
Sbjct: 116 VFGKPT-LFGDKFNIPHPDIDPYISEEERPTGLMPYYNTTEKMKNHYLNSKAIQKIMAAA 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE---RLAYDELL 234
            S +   LPE +   ++ +     +  A   IH P      E T+  RE   RL ++EL 
Sbjct: 175 FSSVVRSLPETLPDSIINEARLMGLKSAMRNIHFP------ESTALLREAQYRLKFEELF 228

Query: 235 AGQIALLLMRKQFKKEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKN 292
             Q+ +L      K ++ G   +  G    +    N+PF  T +Q+  IK+I QDM+   
Sbjct: 229 YIQLNILRYTADRKSKLKGFVFSKVGDYLNRFYDENLPFPLTNAQKRIIKEIRQDMATGE 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +M R+LQGDVGSGKTLVAL+ M  A++   QA +MAP  ILA QHY+ I +      + V
Sbjct: 289 QMNRLLQGDVGSGKTLVALMLMLIALDNNFQAALMAPTEILATQHYQTITEALAGLDVNV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
           E++TG+  ++ R +    +  G   I+IGTHAL +D++Q+  L LV++DEQHRFGV QR 
Sbjct: 349 ELLTGSTKKSDRERIHNALLTGDLQILIGTHALIEDTVQFSNLGLVVIDEQHRFGVAQRA 408

Query: 413 KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           KL  K    PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+     +   +
Sbjct: 409 KLWSKNVNPPHILVMTATPIPRTLAMTVYGDLDVSVIDELPPGRKPIQTIHQYDKKRGAL 468

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
            E ++  L EG++ Y + P IEE ++ + +++ E F  + E F   ++  +HG+M   +K
Sbjct: 469 YESIRRQLQEGRQVYIVYPLIEESEKLDLKNLEEGFEHIKEIFPDYTVCKVHGKMKPKEK 528

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           ++ M  F     ++++ATTVIEVG++V +AS+++IE+A+ FGL+QLHQLRGRVGRG + S
Sbjct: 529 DAEMQRFVTNEAQIMVATTVIEVGVNVPNASVMVIESAQRFGLSQLHQLRGRVGRGADQS 588

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQP 649
            CIL+    LS ++  R+ ++  + DGF IAE DLK R  G++ G +QSG+P    IA  
Sbjct: 589 YCILVTPYELSADTRKRIDIMVESNDGFEIAEADLKLRGPGDLEGTQQSGIPFNLRIANL 648

Query: 650 ELHDSLLEIARKDAKHILTQDPDL 673
                +L+ AR+ A+ +L +DP +
Sbjct: 649 VRDGEILQYAREVAQKVLDEDPQM 672


>gi|291524768|emb|CBK90355.1| ATP-dependent DNA helicase RecG [Eubacterium rectale DSM 17629]
          Length = 688

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 237/682 (34%), Positives = 366/682 (53%), Gaps = 38/682 (5%)

Query: 11  APLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +P++  +G+G+K     +K  +   G        D+L + P  ++     P+I++I E  
Sbjct: 5   SPITAVKGIGEKTQKAFAKMGVYTVG--------DILLHFPRDYVKF---PEITDIDELN 53

Query: 69  IVTITGYISQHSSFQ----LQKRRPYKILLND--GTGEITLLFFYRKTEMLKNVFFEGRK 122
            V ++   + H+  +    ++     +I L D    G +  L +YR    LK    +GR 
Sbjct: 54  NVNVSSTYAIHAVIKKAPVVKNTARMQITLQDIGSPGHMIQLVWYR-MPYLKAQLVQGRH 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           +   G IK    R +M  P        +     ++ VYS+ +G++ +L  K I E LS  
Sbjct: 113 LIFYGHIKPKGGRYVMEQPVVYEVQKYEAIRDTLQPVYSVTSGVTNNLIVKTIKETLSHD 172

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            +L +++ KD+  +  F     A   IH P    DF+    AR RL +DE     + ++ 
Sbjct: 173 TLLSDYLPKDIRHRYGFCEYNYAMKQIHFP---DDFDALVEARRRLVFDEFF---LFIMG 226

Query: 243 MRKQFKKEIGIPINVE---GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           MR Q KK+       E        +++  +P+  T +Q+  I +I QD+     M R++Q
Sbjct: 227 MRYQNKKQQKDKNEFEFTDDAFIDRMIEKLPYELTGAQKKTIDEIKQDIKSPYVMQRLIQ 286

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEII 355
           GDVGSGKT+VA + MA A + G Q+ IMAP  +LA QHYE     + ++  ++ ++  ++
Sbjct: 287 GDVGSGKTIVAFLLMAWASKCGYQSAIMAPTEVLANQHYETFCSLVSQFGLDSPVV--LL 344

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG+M    +R+A ER+ + +  +IIGTHAL Q+   +  L LVI DEQHRFGV+QR   +
Sbjct: 345 TGSMTAKQKREAYERLENEKNALIIGTHALIQEKADFSNLSLVITDEQHRFGVKQRESFS 404

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K   PH+L+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++      +    +
Sbjct: 405 DKGRKPHILVMSATPIPRTLAIIIYGDMDISVINEVPAKRLPIKNCVVGTAFRPKAYSFI 464

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDKESV 533
           +  +  G +AY ICP +EE + S   +V +  N L       I   +++GRM    K+ V
Sbjct: 465 EEQVRAGHQAYVICPLVEETENSEGENVTDYANVLKAALPKDITVDVLNGRMKSKAKDEV 524

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F N   ++L++TTV+EVG++V +A++++IENA+ FGLAQLHQLRGRVGRG+  S CI
Sbjct: 525 MQRFANNESQVLVSTTVVEVGVNVPNATVMMIENADRFGLAQLHQLRGRVGRGDAQSYCI 584

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
            +     SK S  RL +L  + DGF IA EDLK R  G+  GI+QSG   F +A      
Sbjct: 585 FINS-SNSKKSKKRLEILNKSNDGFYIASEDLKLRGPGDFFGIRQSGDLAFALADVYQDS 643

Query: 654 SLLEIARKDAKHILTQDPDLTS 675
            +L+ A +    +L  DP L +
Sbjct: 644 DVLKEASEMVDEVLEADPALCT 665


>gi|329963080|ref|ZP_08300860.1| ATP-dependent DNA helicase RecG [Bacteroides fluxus YIT 12057]
 gi|328529121|gb|EGF56051.1| ATP-dependent DNA helicase RecG [Bacteroides fluxus YIT 12057]
          Length = 698

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 233/642 (36%), Positives = 366/642 (57%), Gaps = 16/642 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           DLL+Y P  ++DR     I EI      + + G I    +    ++R      +DGTG +
Sbjct: 34  DLLYYFPYKYVDRSRIYSIREIDGTMPYIQLKGEILGFETAGEGRQRRLIAHFSDGTGIV 93

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            L++F +  + L   +   ++  V GK      RI + HP     +   ++   ++  YS
Sbjct: 94  DLVWF-QGIKYLVGKYKVHQEYIVFGKPTAFNGRINIAHPDIDLASELKLSSMGMQPYYS 152

Query: 162 LP-----TGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                  + L+    +K++   + +L   L E +   +L +     + EA   IH P  +
Sbjct: 153 TTDKMKRSSLNSHAIEKMMSTVIQQLSEPLSETLSAAILNEHHLMPLTEALTHIHFPVNS 212

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKIL-RNIPFSP 273
              +    A+ RL ++EL   Q+ +L   K  +++  G      G+I      RN+PF  
Sbjct: 213 ---DLLRKAQYRLKFEELFYVQLNILRYAKDRQRKYRGYIFEKVGEIFNTFYSRNLPFEL 269

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q+  +K+I +D+    +M R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  IL
Sbjct: 270 TNAQKRVLKEIRRDVGSGKQMNRLLQGDVGSGKTLVALMSMLMALDNGFQACMMAPTEIL 329

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A QHYE I++      + VE++TG++    R   L  +  G  HI+IGTHA+ +D++ + 
Sbjct: 330 ANQHYETIRELLYGMDVRVELLTGSIKGKRREAILAGLLTGDIHILIGTHAVIEDTVNFA 389

Query: 394 KLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            L LV++DEQHRFGV QR +L T+    PHVL+MTATPIPRTL +T  GD+D+S I E P
Sbjct: 390 SLGLVVIDEQHRFGVAQRARLWTKNVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELP 449

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            GRKPI T+    NR + +   ++  +SEG++ Y + P I+E ++ + +++ E +  + E
Sbjct: 450 PGRKPIATIHQFDNRRESLYRSVRKQISEGRQVYIVYPLIKESEKIDLKNLEEGYLHVCE 509

Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            F    +  +HG+M   +K++ M  F  G  ++++ATTVIEVG++V +AS++IIENAE F
Sbjct: 510 EFPECKVCKVHGKMKPAEKDAQMQQFVAGEAQIMVATTVIEVGVNVPNASVMIIENAERF 569

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+QLHQLRGRVGRG + S CIL+    L++++  RL ++  T DGF IAE DLK R  G
Sbjct: 570 GLSQLHQLRGRVGRGADQSYCILVTGYKLAEDTRKRLEIMVRTNDGFEIAEADLKLRGPG 629

Query: 632 EILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPD 672
           ++ G +QSG+   L IA       LL+  R+ A+ ++  DP+
Sbjct: 630 DLEGTQQSGIAFDLKIADVVRDGQLLQYVREVAQKVIDVDPN 671


>gi|319899972|ref|YP_004159700.1| ATP-dependent DNA helicase RecG [Bacteroides helcogenes P 36-108]
 gi|319415003|gb|ADV42114.1| ATP-dependent DNA helicase RecG [Bacteroides helcogenes P 36-108]
          Length = 698

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 237/666 (35%), Positives = 377/666 (56%), Gaps = 21/666 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   + +     DLL+Y P  ++DR     I EI      + + G I
Sbjct: 14  GVGPQRASVLNKELGIYSLH-----DLLYYFPYKYVDRSRIYHIQEIDGTMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F +  + L   +   +   V GK      RI
Sbjct: 69  LHFETVGEGRQRRLIAHFSDGTGMVDLVWF-QGIKYLLGQYKVHQDYVVFGKPTAFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRL-PVLPEWIE 190
            + HP     +   ++   ++  Y+       + L+    +K++   + +L   +PE + 
Sbjct: 128 NIAHPDIDPVSELKLSTMGMQPYYNTTAKMKRSSLNSHAIEKMMSTVIQQLREPIPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             +L +    S+ +A   IH P  +   E    A+ RL ++EL   Q+ +L   K  +++
Sbjct: 188 PAILNEHHLMSLTDALTNIHFPVNS---ELLRKAQYRLKFEELFYVQLNILRYAKDRQRK 244

Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
             G      G+I      RN+PF  T +Q+  +K+I +D+    +M R+LQGDVGSGKTL
Sbjct: 245 YRGYIFEKVGEIFNSFYSRNLPFELTNAQKRVLKEIRRDVGSGKQMNRLLQGDVGSGKTL 304

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL++M  A++ G QA +MAP  ILA QHYE I +   +  + VE++TG++    R   L
Sbjct: 305 VALMSMLIALDNGFQACMMAPTEILANQHYETICELLYDMDVRVELLTGSVKGKRRETIL 364

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427
             +  G  HI+IGTHA+ +D + +  L LV++DEQHRFGV QR +L T+    PHVL+MT
Sbjct: 365 ADLLTGDVHILIGTHAVIEDKVNFASLGLVVIDEQHRFGVAQRARLWTKSIQPPHVLVMT 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   ++  ++EG++ Y 
Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRKESLYRSVRKQIAEGRQVYI 484

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ M  F +G  ++++
Sbjct: 485 VYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFVSGEAQIMV 544

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+    L++++  
Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTGYKLAEDTRK 604

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665
           RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R+ A+ 
Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVREIAQK 664

Query: 666 ILTQDP 671
           ++  DP
Sbjct: 665 VIDADP 670


>gi|313124079|ref|YP_004034338.1| ATP-dependent DNA helicase recg [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280642|gb|ADQ61361.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 679

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/673 (34%), Positives = 368/673 (54%), Gaps = 26/673 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +F P++  +GVG K +  L  +            DLLFY P  + +    P + ++ + +
Sbjct: 7   IFRPVTALKGVGAKTAEALQSL------GIYSIYDLLFYFPYRYDELENLP-LDQLEDGQ 59

Query: 69  IVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            V + G ++ +   + F   K R  +K+ ++    +I ++ F+ +  + K +   G++I 
Sbjct: 60  KVMLKGIVATNPYQNYFGYHKSRVSFKLRIDH---DIIMVNFFNQPWLTKQLSV-GQEIA 115

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           V GK   L+ + +  +      NS D   P    +YS+   +     + +I  A++  + 
Sbjct: 116 VYGKYD-LRKQSLSAYKLLANKNSDDGMAP----IYSVNRQIKQKKLQTMIDLAIAESMD 170

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            +   + +DL +     +  +    +H+P   KD      AR    + E    Q+ L LM
Sbjct: 171 EIGNAVPEDLRKHYRLMADQDLVIAMHHP---KDLTEAKEARRSAVFREFFLFQMQLALM 227

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
             Q K   G   + + +   K+ +++PF+ +  Q+  I +I  DM    +M R+LQGDVG
Sbjct: 228 SSQNKSHSGYAKHYDLEEIGKLTKSLPFALSPDQKKVINEIFADMFVDQQMQRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ A+  AV AG QA +M P  ILA QHY  I    ++  + V ++TG+     
Sbjct: 288 SGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTKTME 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+  + +A G  +++IGTHAL Q+ + + KL LVI+DEQHRFGV QRL L  K   P +
Sbjct: 348 RREIYKELADGSINVVIGTHALIQEQVAFKKLGLVIIDEQHRFGVVQRLALINKGDRPDI 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPR+L LT  GD  +S+I   PAGRKPIK+     +++DEV   ++  L+EG 
Sbjct: 408 LAMTATPIPRSLALTVYGDTALSEIRHLPAGRKPIKSYWKTSSQLDEVYSLMRQQLAEGF 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I E +  +  +     + L   F    + ++HG+M   DKE +MD F  G  
Sbjct: 468 QIYAVTPLISESETIDLENAEALHDRLAGEFPDQEVVLLHGKMGAADKEQIMDRFAAGEV 527

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ T+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG+  S C+ L  P  ++
Sbjct: 528 DILVTTSVIEVGVDVANANLMVIFDADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-TE 586

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F          ++ +AR +
Sbjct: 587 AGKQRMKIVAETNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRTGSVVSDYQVMVVARDE 646

Query: 663 AKHILTQDPDLTS 675
           AK I+  DPDL +
Sbjct: 647 AKRIVQADPDLKA 659


>gi|206976738|ref|ZP_03237642.1| ATP-dependent DNA helicase RecG [Bacillus cereus H3081.97]
 gi|229197966|ref|ZP_04324680.1| ATP-dependent DNA helicase recG [Bacillus cereus m1293]
 gi|206745048|gb|EDZ56451.1| ATP-dependent DNA helicase RecG [Bacillus cereus H3081.97]
 gi|228585445|gb|EEK43549.1| ATP-dependent DNA helicase recG [Bacillus cereus m1293]
          Length = 682

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 230/663 (34%), Positives = 377/663 (56%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +   L + K  P   EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPDGL---LSRYKLLPRY-EALRALHFPTGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +  +  Q+ +  +PF  T +Q   + +I++DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSEELQEFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++    
Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|71898961|ref|ZP_00681127.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1]
 gi|71731207|gb|EAO33272.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1]
          Length = 718

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 232/616 (37%), Positives = 353/616 (57%), Gaps = 39/616 (6%)

Query: 92  ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD 150
           +L +D    +T+ FF+ +   +   F  G ++   G  K  +    +VHP Y IF   + 
Sbjct: 92  VLSDDAHHRLTMRFFHFRAAQIAR-FTVGTRVRAYGVPKLGQYGWEIVHPSYRIFAPGEA 150

Query: 151 VNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP------VLPEWIEKDLLQKKSFPSIA 203
           V+    ++ VY +  G+   + +++I EAL  LP      +LP+    DL      P++ 
Sbjct: 151 VSLNDCLDPVYPVIDGVGPAIVRQLIREALEHLPTDAALELLPDVWLSDL----GLPTLR 206

Query: 204 EAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
            A  I+H P    D       T PA++RL+ +ELLA Q++L   R   ++    P+  +G
Sbjct: 207 TALLIMHRPPLDADIARLMVGTHPAQQRLSLEELLAHQLSLRRQRIALQRH-SAPVLPDG 265

Query: 260 K-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             +   +L  +PF  T +Q+     I  D+++   MLR++QGDVGSGKT+VA +A   AV
Sbjct: 266 AALVASLLHALPFHLTAAQQRVFAQIAADVAKPVPMLRLVQGDVGSGKTVVAALAALLAV 325

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           E   Q  + AP  +LA+QH+  ++ + +   + V  +   +    R +AL  +A G A +
Sbjct: 326 EQNKQVALAAPTALLAEQHFINLRDWLEPLGVRVYWLAAKVTGKARLQALNDVASGDAQV 385

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATA---PHVLLMTATPIPRT 434
           ++GTHAL Q+S+ ++ L L IVDEQHRFGV QRL L  K ATA   PH L+MTATPIPRT
Sbjct: 386 VVGTHALMQESVVFHDLALTIVDEQHRFGVHQRLLLRDKGATAGIVPHQLVMTATPIPRT 445

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L + +  D+D+S I E P GR P++T ++   R  E++ER+++  ++G++ YW+C  I+E
Sbjct: 446 LAMAAYADLDVSVIDEMPPGRTPVQTNVLSAERRPELVERIRLACAQGRQVYWVCTLIDE 505

Query: 495 KK--------ESN---FRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFK 538
            +         SN    RS V+   + +E  ++      + ++HGRM   +K+  M +FK
Sbjct: 506 SQTEAEQAPHSSNDIGHRSEVQAAQATYEALSAQLPGVRVGLVHGRMKAAEKQRTMRAFK 565

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                +L+ATTVIEVG+DV +AS++IIENAE  GLAQLHQLRGRVGRG  +SSC+LLY P
Sbjct: 566 CNEIDVLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGRGSVVSSCVLLYQP 625

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS  +  RL +++ T DGF IAE+DL+ R  GE+LG +Q+G+  F +A       LL  
Sbjct: 626 PLSMLARQRLQIMRQTNDGFAIAEKDLELRGPGELLGTRQTGLAAFRVADLARDAHLLPR 685

Query: 659 ARKDAKHILTQDPDLT 674
               A  +L + P L 
Sbjct: 686 VYSLANTLLDESPQLA 701


>gi|330684637|gb|EGG96342.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis VCU121]
          Length = 682

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 224/661 (33%), Positives = 378/661 (57%), Gaps = 22/661 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+  +G+G K    L ++    N N     DL+ Y P+ + D      ++E  ++  VT
Sbjct: 12  PLNQIKGIGPKRLAVLQEL----NINTVE--DLILYLPTRYEDNTV-IDLNEAEDQSTVT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITVTGKIK 130
           + G +    +     R   K+ ++    +I +   F+ +  + K +   G  +TV GK  
Sbjct: 65  VQGEVYSSPTVAFFGRNKSKLTVHIMVNQIAVKCVFFNQPYLKKKIELHG-TVTVKGKWN 123

Query: 131 KLKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
           + K  I   + + +F N QD +N   +E VY +  G+     +  I ++L+ + V+ EW+
Sbjct: 124 RSKQEI---NGNRMFFNQQDNLNDTQLEPVYRIKEGIKQKQLRDHIRQSLNDV-VIHEWL 179

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFK 248
             +L  K    ++    N +H+P+  +D      AR   A+ EL   ++ +  L R +  
Sbjct: 180 SDELRNKYKLETLEFTLNHLHHPQGKQDL---LRARRTYAFTELFMFELRMQWLNRLEKA 236

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +  I I  + +  +  + ++PF  T +Q++++ +I +D+    RM R+LQGDVGSGKT+
Sbjct: 237 SDDAIEIEYDIQKVKAFIDSLPFELTDAQKTSVNEIFRDLKAPIRMHRLLQGDVGSGKTV 296

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA I M A   AG Q+ +M P  ILA+QH E + +   +T + V ++TG++    RR  L
Sbjct: 297 VAAICMYALKTAGYQSALMVPTEILAEQHAESLIQLFGDT-MNVALLTGSVKGKKRRILL 355

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E++ +G    +IGTHAL QD + +  + LVI DEQHRFGV QR +L +K    +VL MTA
Sbjct: 356 EQLENGTIDCLIGTHALIQDDVTFDNVGLVITDEQHRFGVNQRQRLREKGAMTNVLFMTA 415

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL ++  G++D+S I + P GRKPI T      + ++V+ ++   L +G++AY I
Sbjct: 416 TPIPRTLAISVFGEMDVSSIKQLPKGRKPIITSWAKHEQYEQVLTQMTNELKKGRQAYVI 475

Query: 489 CPQIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IE  +   + ++VVE F SL +++  + + ++HG++S+ +K+ VM  F      +L+
Sbjct: 476 CPLIESSEHLEDVQNVVELFESLQQYYGENKVGLLHGKLSNEEKDEVMHRFSEHEIDILV 535

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    
Sbjct: 536 STTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIE 594

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R++++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  +
Sbjct: 595 RMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANIVEDYRMLEVARDEAGEL 654

Query: 667 L 667
           +
Sbjct: 655 I 655


>gi|126664109|ref|ZP_01735102.1| ATP-dependent DNA helicase [Flavobacteria bacterium BAL38]
 gi|126623823|gb|EAZ94518.1| ATP-dependent DNA helicase [Flavobacteria bacterium BAL38]
          Length = 706

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 257/695 (36%), Positives = 387/695 (55%), Gaps = 50/695 (7%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           LN L  P+   +GVG +    L K +        ++ DLL   P+ +IDR    KI+E+ 
Sbjct: 3   LNLLETPIEYLKGVGPQRGDLLRKELGI-----HKYADLLNLFPNRYIDRTRYYKINELQ 57

Query: 66  EERI-VTITGYISQHSSFQLQKRRPYKI-LLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                V I G I    + +  K R   +    D TG++ L++F  +  + +++     KI
Sbjct: 58  NSNSEVQIVGKIINIKTVEQGKGRSRLVATFIDDTGQMELVWFQGQKWIRESI-----KI 112

Query: 124 TVT----GKIKKLKNRIIMVHPHYIFHNSQDVNF-----PLIEAVYSLPT-GLSVDLFKK 173
            V     GK+ +      M HP          +      P+  +   L   G+S  +  K
Sbjct: 113 NVPYVIFGKVTQFGATYNMAHPEMELLEEHKTSLRSAMQPVYPSTEKLANKGISNKVINK 172

Query: 174 IIVEALSRLPVL-----PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
           ++ +      VL     P ++  +L   K  P  A  FNI H P K++D    + A+ RL
Sbjct: 173 MMQQLFVETQVLFSENLPNYLLDEL---KLIPKNAALFNI-HFP-KSQDL--LAKAQFRL 225

Query: 229 AYDELLAGQIALL---LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDI 284
            ++EL   Q+ L+   L+RK   K  G+P    G+      +N +PF  T +Q+  +K+I
Sbjct: 226 KFEELFFIQLQLITKNLIRKHKIK--GMPFEKVGENFNNFYKNHLPFDLTNAQKRVLKEI 283

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY----EF 340
             D+    +M R+LQGDVGSGKT+VAL+ M  A + G Q+ +MAP  ILA QH+    E 
Sbjct: 284 RNDLGSNAQMNRLLQGDVGSGKTIVALMCMLLAKDNGFQSCLMAPTEILANQHFNGLSEL 343

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           +   T    I ++I+TG+   A R+   E + +G   IIIGTHAL +D +Q+  L L I+
Sbjct: 344 LNPETSGLNISIKILTGSTKTAERKIIHEALENGTLDIIIGTHALLEDKVQFQNLGLAII 403

Query: 401 DEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           DEQHRFGV+QR KL  KA+  PHVL+MTATPIPRTL ++  GD+DIS I E P GRKPI+
Sbjct: 404 DEQHRFGVEQRSKLWGKASIPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPIQ 463

Query: 460 TV-IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---T 515
           TV     NR+ +V + LK  +++G++ Y + P I+E ++ +++ +++ + S+   F    
Sbjct: 464 TVHRYDSNRL-KVWKFLKDEIAKGRQVYIVYPLIQESEKMDYKDLMDGYESISRDFPLPQ 522

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            SI+I++G+M   DK+  M  F  G   +++ATTVIEVG++V +AS+++IE+AE FGL+Q
Sbjct: 523 YSISIVYGKMKPADKDEEMRRFSEGKTNIMVATTVIEVGVNVPNASVMVIESAERFGLSQ 582

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG E S CIL+    LS +S  R+  +  T DGF I+E DLK R  G+I+G
Sbjct: 583 LHQLRGRVGRGAEQSYCILMTSHKLSNDSKIRMETMVRTNDGFEISEVDLKLRGPGDIMG 642

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            +QSG+    IA       +L++AR  A  +L +D
Sbjct: 643 KQQSGVLNLQIADLVKDKDILQLARHHAIKLLKED 677


>gi|34540181|ref|NP_904660.1| ATP-dependent DNA helicase RecG [Porphyromonas gingivalis W83]
 gi|34396493|gb|AAQ65559.1| ATP-dependent DNA helicase RecG [Porphyromonas gingivalis W83]
          Length = 698

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 240/681 (35%), Positives = 378/681 (55%), Gaps = 22/681 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI- 64
           ++ L   ++   GVG K +  L + I         ++DLL Y P  ++DR     I EI 
Sbjct: 1   MDILSTKITYLTGVGPKRAEVLKEEIEVRT-----YLDLLHYFPFRYVDRSRFYAIREIR 55

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           S+   + + G +   S     +R+      +DGTG I L++F +  + +++   EGR+  
Sbjct: 56  SDMPYIQLRGVLRNFSEVGEGRRKRLTATFSDGTGSIELVWF-KGIKYIRDKLQEGRRYI 114

Query: 125 VTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL- 182
           V GK     +   + HP       ++ V   L    ++     S+ L  K + + L  L 
Sbjct: 115 VFGKPVFFASGYNIAHPEIDAEEKAEQVAGGLTPIYHTTERMKSMGLGSKQLQQLLYVLL 174

Query: 183 ----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
                 L E +   +L    F S  EA   IH P+     E    AR RL ++EL   Q+
Sbjct: 175 NQVSATLTETLPPYILSSYGFVSYQEAIRQIHFPQGVAQLE---AARTRLKFEELFYVQL 231

Query: 239 ALLLMRKQFKKEI-GIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            L+  + + K    GI     G +     + ++PF  T +Q+  I++I QD    ++M R
Sbjct: 232 HLIGSKLERKARFQGIVFAQVGALFNTFYKEHLPFELTGAQKRVIREIRQDTLSGHQMNR 291

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVAL++M  A++ G QA +MAP  ILA+QH+  + +  +   I V ++ 
Sbjct: 292 LVQGDVGSGKTLVALLSMLLALDNGCQACLMAPTEILARQHHHTLSELLRPLGIEVGLLI 351

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+     R + L R+A G   I++GTHAL +  + + +L + ++DEQHRFGVQQR +L +
Sbjct: 352 GSCTARQRERLLPRLADGSLSIVVGTHALLEQGVAFRRLGMAVIDEQHRFGVQQRARLWE 411

Query: 417 KA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
           K   T PH+L+M+ATPIPRTL +T  GD+DIS I E P GRKPI+T+    N +  V   
Sbjct: 412 KNLDTLPHILIMSATPIPRTLAMTLYGDLDISIIDELPPGRKPIQTLHHFDNDMAPVFRF 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESV 533
           L+  L+ G++ Y + P IE  + ++ +++ + F      F    + ++HG+M   +KE+ 
Sbjct: 472 LRSQLAAGRQVYVVYPMIEGSETTDLKNLEDGFELFSSIFPDEGVTMVHGKMKAKEKEAR 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++L+ATTVIEVG++V +A+++++ENA+ FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MADFVSGRSRILLATTVIEVGVNVPNATVMVVENADRFGLSQLHQLRGRVGRGGEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELH 652
           L+      ++S  R+ V+  T DGF IAEED++ R  G++ G +QSG    L IA P   
Sbjct: 592 LITGTKTGEDSRRRIQVMVETNDGFEIAEEDMRLRGFGDLEGTRQSGRQISLRIANPARD 651

Query: 653 DSLLEIARKDAKHILTQDPDL 673
             L+ ++R  A+ +L +DP+L
Sbjct: 652 TELIALSRSIAEQLLERDPEL 672


>gi|218899008|ref|YP_002447419.1| ATP-dependent DNA helicase RecG [Bacillus cereus G9842]
 gi|218545708|gb|ACK98102.1| ATP-dependent DNA helicase RecG [Bacillus cereus G9842]
          Length = 682

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 232/663 (34%), Positives = 377/663 (56%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K    E   +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLTLDE--TVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +   L + K  P   EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPDGL---LGRYKLLPRY-EALKALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + A+  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A 
Sbjct: 288 SGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGAR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR  L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RRDILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|228909680|ref|ZP_04073503.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis IBL 200]
 gi|228849969|gb|EEM94800.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis IBL 200]
          Length = 682

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 232/663 (34%), Positives = 378/663 (57%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K    E   +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLTLDE--TVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +   L + K  P   EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPDGL---LGRYKLLPRY-EALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVNEILKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + A+  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A 
Sbjct: 288 SGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGAR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|228954132|ref|ZP_04116160.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805452|gb|EEM52043.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 682

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 233/663 (35%), Positives = 378/663 (57%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G I      Q   ++  ++ +    G   IT + F R     K    E   +T+TGK 
Sbjct: 61  VEGKIHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +   L + K  P   EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPDGL---LGRYKLLPRY-EALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSVELQEFIDALPFPLTGAQHRVVDEILKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + A+  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A 
Sbjct: 288 SGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGAR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|229180131|ref|ZP_04307475.1| ATP-dependent DNA helicase recG [Bacillus cereus 172560W]
 gi|228603340|gb|EEK60817.1| ATP-dependent DNA helicase recG [Bacillus cereus 172560W]
          Length = 682

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 233/663 (35%), Positives = 379/663 (57%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G I      Q   ++  ++ +    G   IT + F R     K    E   +T+TGK 
Sbjct: 61  VEGKIHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +   L + K  P   EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPDGL---LGRYKLLPRY-EALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I++ A+  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A 
Sbjct: 288 SGKTVVAAISLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGAR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|206971157|ref|ZP_03232108.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH1134]
 gi|206733929|gb|EDZ51100.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH1134]
          Length = 682

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 233/663 (35%), Positives = 378/663 (57%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G I      Q   ++  ++ +    G   IT + F R     K    E   +T+TGK 
Sbjct: 61  VEGKIHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +   L + K  P   EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPDGL---LGRYKLLPRY-EALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + A+  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A 
Sbjct: 288 SGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGAR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKRDMLDRVLGFVEKEIKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|255038637|ref|YP_003089258.1| ATP-dependent DNA helicase RecG [Dyadobacter fermentans DSM 18053]
 gi|254951393|gb|ACT96093.1| ATP-dependent DNA helicase RecG [Dyadobacter fermentans DSM 18053]
          Length = 706

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 239/682 (35%), Positives = 370/682 (54%), Gaps = 28/682 (4%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT-ITG 74
            +GVG + +  L++ ++        F DL+ ++P    DR    K+S+++E+     + G
Sbjct: 21  LKGVGPQKAALLNQELSIFT-----FGDLIQHYPFRHEDRSVFHKLSDLNEQMTAAQVKG 75

Query: 75  YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
            + + S      ++       DGTG + L++F +     +     G +  V G       
Sbjct: 76  RLREFSVIGEGSKKRLVGTFQDGTGFLDLVWF-QSISWYEKWLRRGGEYIVYGTPVLYGG 134

Query: 135 RIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEW 188
           +  + HP       ++ +    + +Y L   L         +  + R  +      + E 
Sbjct: 135 KWSITHPEIEVLTPENASAGYWQPIYPLTEKLRKKFLDSKALSKMMRNLLEIAHTHIRET 194

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   L++K    S A+A    H P+  +       A+ RL ++EL   Q  L+  +   K
Sbjct: 195 LPAPLVEKYRLVSKAQALWHFHLPQDNRTLH---QAQRRLKFEELFYNQFRLIKNKLLHK 251

Query: 249 KEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
            E  G+  +    + +   +++PF  T +Q   + +I +D+    +M R+LQGDVGSGKT
Sbjct: 252 TEYPGLIFDKTLLVKEFYEQHLPFKLTGAQIRVLHEIHEDLKTGKQMNRLLQGDVGSGKT 311

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I M  A++   QA +MAP  IL  QHY+ +KK+     + +  +TG+  +  R   
Sbjct: 312 IVAFITMLFALDNDAQACLMAPTEILTDQHYQGLKKFADLLGVNIAKLTGSTKKKEREVI 371

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL--TQKATAPHVLL 425
              + +G  HII+GTHAL +D++Q+  L L I+DEQHRFGV QR KL    K   PH+L+
Sbjct: 372 HRELLNGTLHIIVGTHALIEDAVQFKNLGLCIIDEQHRFGVAQRAKLWAKNKRINPHMLV 431

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSE 481
           MTATPIPRTL +T  GD+DIS I E PAGRKPIKTV    +R D    +V   LK  +++
Sbjct: 432 MTATPIPRTLAMTLYGDLDISAINELPAGRKPIKTV----HRFDKNRLQVFGFLKEEIAK 487

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++ Y + P IEE ++ + + +++ + S+   F    ++I+HG+M   DK+  M  F  G
Sbjct: 488 GRQVYMVYPLIEESEKMDLKDLMDGYESVARAFPGVPLSIVHGKMRSQDKDFEMGRFVRG 547

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG E S CIL+    L
Sbjct: 548 ETKIMVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGAEQSYCILMTDYKL 607

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           SK++  R+  +  T DGF IAE DL+ R  G+I G +QSG+   L+A       +L+ AR
Sbjct: 608 SKDTKLRIETMCRTNDGFEIAEVDLQLRGPGDISGTQQSGLVDLLVANLAQDGEILKAAR 667

Query: 661 KDAKHILTQDPDLTSVRGQSIR 682
             A+ ILT DPDL     Q IR
Sbjct: 668 ASAEEILTTDPDLLQPVHQPIR 689


>gi|27262498|gb|AAN87530.1| ATP-dependent DNA helicase recG [Heliobacillus mobilis]
          Length = 807

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 239/670 (35%), Positives = 375/670 (55%), Gaps = 31/670 (4%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            RGVG + +  L ++       ET   DLLF+ P  +IDR     I++I       ++G 
Sbjct: 135 LRGVGPQRAAALKRL-----GIET-IQDLLFHLPHRYIDRSQLLSIAQIRYPGDYNVSGV 188

Query: 76  ISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
           I  +   Q   RR   ++   L+DGTG + ++ F RK   L   +  G  + V+GK++  
Sbjct: 189 IRAYQ--QYNPRRGLAVIKGQLDDGTGILPIVLFNRK--QLTAKYPPGTAVIVSGKVE-F 243

Query: 133 KNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIE 190
           +     +H   I + ++  ++   I  VY    GL+    + +  + + +  P + + + 
Sbjct: 244 RYGKAELHVEEIENQAEAGLHTNRIVPVYPATEGLNQRFLRGLYEQVIPKYAPQMNDIVP 303

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           K L +  + P++++A   +H P      E     R +LA++E    Q A   +R++    
Sbjct: 304 KGLDRSTNLPALSQAVQWVHFP---DSLEQAELGRRKLAFNEAFLLQTAWQFIRRRRN-- 358

Query: 251 IGIPINVEG-KIAQ----KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             +PI   G K AQ    K+   +P+  T +Q+  +++I  DM     M R+LQGDVG+G
Sbjct: 359 --VPIEGIGHKPAQEELNKLWSLLPYELTAAQKRVVREIAADMEANRPMNRLLQGDVGAG 416

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  A+  AV +G QA +MAP  +LA+QH    ++      I V  ++G++ +  + 
Sbjct: 417 KTIVAASAVVKAVASGYQAALMAPTEVLAEQHAISWQRLLAEMAIPVAHLSGSLTRRRKE 476

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L+ ++ G   +++GTHAL Q  + + +L LV++DEQHRFGV+QR  L +K     +L+
Sbjct: 477 EVLKGLSEGTYPVVVGTHALLQKEVVFQRLGLVVIDEQHRFGVRQRAALWEKGQQADLLV 536

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  GD+D+S + E+P GR+ +KT  +  +    V   ++  +S+G +A
Sbjct: 537 MTATPIPRTLAMTLYGDLDVSILNERPPGRQEVKTYHVGSDTWPRVYNLIRREVSQGHQA 596

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE +E +  +V ER+ +L         + I+HGRM   +K +VM+ F  G  K
Sbjct: 597 YIVCPAIEESEEMDLAAVEERYGTLTRDVFPDLEVGILHGRMKKEEKAAVMERFYRGNTK 656

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ATTVIEVGIDV  A++++IE AE FGLAQLHQLRGRVGRG+  S CIL+    LS  
Sbjct: 657 VLVATTVIEVGIDVPAATVMVIEGAERFGLAQLHQLRGRVGRGQAQSFCILIAD-KLSDE 715

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+S ++ T DGF +AEEDLK R  GE LG +QSG+P F +A       LL+ A+  +
Sbjct: 716 GKRRMSAMEGTNDGFRLAEEDLKLRGPGEFLGTRQSGIPAFKVADLVKDADLLDQAKSAS 775

Query: 664 KHILTQDPDL 673
           +    QDP L
Sbjct: 776 EQWNAQDPTL 785


>gi|229162791|ref|ZP_04290748.1| ATP-dependent DNA helicase recG [Bacillus cereus R309803]
 gi|228620673|gb|EEK77542.1| ATP-dependent DNA helicase recG [Bacillus cereus R309803]
          Length = 685

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 230/663 (34%), Positives = 375/663 (56%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 11  PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K    E   +T+TGK 
Sbjct: 64  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDEA--VTITGKW 121

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 122 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 177

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+     LL +       EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 178 LPD----GLLSRYKLLPRYEALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 230

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +     Q+ +  +PF  T +Q   + +I++DM+   RM R+LQGDVG
Sbjct: 231 KMERENSKGTKKEIPSAELQEFIDTLPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVG 290

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++    
Sbjct: 291 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVR 350

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 351 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 410

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 411 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 470

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 471 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 530

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 531 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 589

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 590 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 648

Query: 661 KDA 663
           +DA
Sbjct: 649 QDA 651


>gi|49478911|ref|YP_037916.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330467|gb|AAT61113.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 657

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 224/631 (35%), Positives = 362/631 (57%), Gaps = 27/631 (4%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE--I 101
           LL + P  + D +    ++E+  +  VT+ G +      Q   ++  ++ +    G   I
Sbjct: 9   LLEHFPYRYED-YAMKDLAEVKHDERVTVEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLI 67

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
           T + F R     K        +T+TGK  + +  I +   H+       V    +E VYS
Sbjct: 68  TAVCFNRP--YYKQKLNLDETVTITGKWDQHRQTIAVSELHF----GPVVRQQEVEPVYS 121

Query: 162 LPTGLSVDLFKKIIVEAL-----SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
           +   L+V   ++ I +AL     S + VLP+     LL +       EA   +H P   +
Sbjct: 122 VKGKLTVKQMRRFIAQALKEYGDSIVEVLPD----GLLSRYKLLPRYEALRALHFPTGQE 177

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
           D +    AR R  Y+E    Q+ +  +RK + +   G    +  +  Q+ +  +PF  T 
Sbjct: 178 DLK---QARRRFVYEEFFLFQLKMQTLRKMERENSKGTKKEIPSEELQEFIDALPFPLTG 234

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q   + +I++DM+   RM R+LQGDVGSGKT+VA I + AA  A  Q  +M P  ILA+
Sbjct: 235 AQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMVPTEILAE 294

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY+ + +   +  + VE++T ++    RR+ L ++  G+  I++GTHAL QD + +++L
Sbjct: 295 QHYQSLAETFSHFGMKVELLTSSVKGVRRREILAKLEQGEIDILVGTHALIQDEVIFHRL 354

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LVI DEQHRFGV QR  L +K  +P VL MTATPIPRTL +T+ G++D+S I E PAGR
Sbjct: 355 GLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGR 414

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           K I+T     + +D V+  ++  +++G++AY ICP IEE ++ + ++ ++  + L  H+ 
Sbjct: 415 KVIETYWAKHDMLDRVLGFVEKEINKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQ 474

Query: 516 S--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               + ++HGR+S  +KE +M  F     ++L++TTV+EVG++V +A++++I +AE FGL
Sbjct: 475 GKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGL 534

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           +QLHQLRGRVGRG E S C+L+  P  S+    R+ ++  T DGF+++E+DL+ R  G+ 
Sbjct: 535 SQLHQLRGRVGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDF 593

Query: 634 LGIKQSGMPKFLIAQPELHD-SLLEIARKDA 663
            G KQSG+P+F +A   +HD   LE AR+DA
Sbjct: 594 FGSKQSGLPEFKVADM-VHDYRALETARQDA 623


>gi|302386340|ref|YP_003822162.1| ATP-dependent DNA helicase RecG [Clostridium saccharolyticum WM1]
 gi|302196968|gb|ADL04539.1| ATP-dependent DNA helicase RecG [Clostridium saccharolyticum WM1]
          Length = 683

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 234/682 (34%), Positives = 374/682 (54%), Gaps = 32/682 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEERIVT 71
           +++ +G+G+K      K+            DLL Y+P ++ D +  P  + E+  ++++T
Sbjct: 6   INSLKGIGEKTGKLFQKV------GVITVEDLLEYYPRAY-DTYEEPSPLGELKPDQVMT 58

Query: 72  ITGY------ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           + G       + ++S  Q+         L D TG  TLL  +     L      G +   
Sbjct: 59  VAGMLYKTPDVKRYSHIQV-----ITTTLKDMTG--TLLLTWYNMPYLHTTLKAGMRAVF 111

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            G++ K   R+ M  P      + +     ++ VY    GLS     +   +ALS   ++
Sbjct: 112 RGRVVKKNGRLTMEQPEVFTAEAYEQVVHSMQPVYGQTKGLSNKTIVRAQRQALSLRSMV 171

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL--LLM 243
            +++  DL +K        A   IH P    +  +   AR+RL +DE     +A+  L  
Sbjct: 172 RDYMPADLRRKHELAEYNFAMEHIHFPTDRSELLF---ARKRLVFDEFFLFLMAVRRLKE 228

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++ KK   + +N+  ++ + + +++P+S TK+Q+  + +I  D+S    M R++QGDVG
Sbjct: 229 RREDKKSAYV-LNLSQEV-ETLRKSLPYSLTKAQQKVLTEIYGDLSGGRVMNRLIQGDVG 286

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE--IITGNMPQ 361
           SGKT++A++++  A   G Q  +MAP  +LA+QH E + +      I  +  ++TG+M  
Sbjct: 287 SGKTIIAILSLLQAAYNGYQGALMAPTEVLAKQHLESMTELFAAHHIDKKPILVTGSMTA 346

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +R A E+IA  +A IIIGTHAL QD + Y  L LVI DEQHRFGV QR  L +K   P
Sbjct: 347 KEKRIAYEKIASHEADIIIGTHALIQDKVIYDNLALVITDEQHRFGVGQRELLGKKGEEP 406

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           HVL+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++      +  E ++  +  
Sbjct: 407 HVLVMSATPIPRTLAIIIYGDLDISVIDELPANRLPIKNCVVDTGYRKKAYEFIRKEIGN 466

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++AY ICP +E  +  +  +V++   +L E     ++  +HG+M   +K  +M+ F  G
Sbjct: 467 GRQAYVICPMVEASEMIDAENVLDYTKTLREALPGITVEYLHGKMKPKEKNGIMERFACG 526

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L++TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CI++     
Sbjct: 527 EIKVLVSTTVIEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGKYQSYCIMVGASD- 585

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + +  RL +L  + DGF IA EDLK R  G+I GI+QSG  +F +       +LL+   
Sbjct: 586 QEGTKERLDILNQSNDGFFIASEDLKLRGPGDIFGIRQSGDLEFKLGDIFTDANLLKTVS 645

Query: 661 KDAKHILTQDPDLTSVRGQSIR 682
           ++ K I T+DP+L     Q ++
Sbjct: 646 EEVKRIFTEDPELEKEEHQELK 667


>gi|218233045|ref|YP_002368656.1| ATP-dependent DNA helicase RecG [Bacillus cereus B4264]
 gi|229071353|ref|ZP_04204576.1| ATP-dependent DNA helicase recG [Bacillus cereus F65185]
 gi|229081110|ref|ZP_04213620.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock4-2]
 gi|229192024|ref|ZP_04318994.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 10876]
 gi|218161002|gb|ACK60994.1| ATP-dependent DNA helicase RecG [Bacillus cereus B4264]
 gi|228591575|gb|EEK49424.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 10876]
 gi|228702154|gb|EEL54630.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock4-2]
 gi|228711807|gb|EEL63759.1| ATP-dependent DNA helicase recG [Bacillus cereus F65185]
          Length = 682

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 233/663 (35%), Positives = 378/663 (57%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G I      Q   ++  ++ +    G   IT + F R     K    E   +T+TGK 
Sbjct: 61  VEGKIHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDE--TVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +AL     S + V
Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +   L + K  P   EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPDGL---LGRYKLLPRY-EALRALHFPVGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + A+  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A 
Sbjct: 288 SGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGAR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|319745647|gb|EFV97947.1| DNA helicase RecG [Streptococcus agalactiae ATCC 13813]
          Length = 671

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 242/669 (36%), Positives = 374/669 (55%), Gaps = 29/669 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P+S  +G G K +    K+      +     DLL Y+P  + D   +     +  E+
Sbjct: 3   LQSPISNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 57  AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNISFFNQP--YLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA--LSRLPV 184
           GK    K+ I  +    +    +D   P    VY +  G+S     K I  A  ++    
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVAQGISQSTLIKAIKSAFEINAHLE 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E +   LL+K      + A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLEKYRLMGRSRACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E  G+PI    +  +  + ++PF  T +Q+ ++ +IL DMS    M R+LQGDVG
Sbjct: 224 AENKSETNGLPILYSKRAMETKISSLPFILTNAQKRSLDEILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++   +  I   I+T  M  A 
Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +   L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KLTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR+
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARR 640

Query: 662 DAKHILTQD 670
            A  I+  +
Sbjct: 641 VASDIVKDN 649


>gi|149925181|ref|ZP_01913479.1| ATP-dependent DNA helicase RecG [Plesiocystis pacifica SIR-1]
 gi|149813951|gb|EDM73598.1| ATP-dependent DNA helicase RecG [Plesiocystis pacifica SIR-1]
          Length = 814

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 239/661 (36%), Positives = 353/661 (53%), Gaps = 46/661 (6%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR-----RPYKILLNDG 97
           DL +  P  + DR     +SE+ E     I G I          R     R  ++  N  
Sbjct: 141 DLAYLLPLGYEDRRQTTLLSEVEEGASAVIHGVIRSFRQGWYSGRYSATMRIEQVQPNGA 200

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-I 156
              +   +F+R   M + V   G ++ + G +K+ + ++ MVHP  +     D    L I
Sbjct: 201 HLGLEARWFHRVGGMSQRVT-TGEEVLLAGVVKRFRGKLSMVHPDIL-----DAQLGLGI 254

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRL-----------PVLPEWIEKDLLQKKSFPSIAEA 205
              Y +  G+      ++   A+ RL           P+ PE +E+  L  +      +A
Sbjct: 255 ATRYPVVEGVGQRTLVRLCKAAVERLRAAREQGILHDPLPPELVERHQLIDQ-----LDA 309

Query: 206 FNIIHNPRKAKD-------FEWTSPARERLAYDELLAGQIALLLMRKQFKKE-IGIPINV 257
              +H P +  D          +SPA  RLA+DE    Q+ALL  R  ++     +P   
Sbjct: 310 VAWLHEPPQDLDEVQLEALIRRSSPAHRRLAFDEFFFLQLALLRQRGTYRATPCALPPLA 369

Query: 258 EGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           EG   ++ LR  +P+ PT +Q   I DI  D+S+   MLR+LQGDVGSGKT VA  A  A
Sbjct: 370 EGSFDRERLRACLPWEPTGAQWRVIDDIEGDLSRHKPMLRLLQGDVGSGKTAVAFAAALA 429

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            ++AG QA IMAP  ILA+QH   ++ + +   + + ++TG+ P+A R   L  +  G+ 
Sbjct: 430 VIDAGAQAAIMAPTEILAEQHMRGMQVWCEKAGVRIALLTGSTPRAQRTSLLALLGAGEI 489

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            +++GTHAL    +++  L LVIVDEQHRFGV+QR  L  K  APH+L+MTATPIPR+L 
Sbjct: 490 DLLVGTHALLVGDVEFASLALVIVDEQHRFGVEQRGALRAKGEAPHLLVMTATPIPRSLA 549

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE----GKKAYWICPQI 492
           LT+ G++D+S I E P GR    T +    R    + R + +L+E    G KAY +CP +
Sbjct: 550 LTAFGELDVSIIDELPPGRIAPTTQVFAGGR---SLGRARKLLAERVRAGDKAYVVCPLV 606

Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           E  +      V     +L +      +A++HGRM   DK++VM+ F++G  ++L+ATTVI
Sbjct: 607 EASEAVAASDVEATAAALRKLLPKHEVAVVHGRMVSRDKDAVMERFRSGEVRVLVATTVI 666

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           EVG+DV DA  I+IE+AE FGLAQLHQLRGRVGR    S C+L      + ++  RL VL
Sbjct: 667 EVGVDVPDARAILIEHAERFGLAQLHQLRGRVGRSAGHSLCLLHTASDPASDAGKRLEVL 726

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670
           + + DGF++AE DL+ R  GE+ G +QSG+P+   A        +L  AR+ A  I+  D
Sbjct: 727 EGSGDGFVVAERDLELRGPGEVFGTRQSGVPRLRFASFSGEGMKMLIAAREAAMAIIEAD 786

Query: 671 P 671
           P
Sbjct: 787 P 787


>gi|167745671|ref|ZP_02417798.1| hypothetical protein ANACAC_00363 [Anaerostipes caccae DSM 14662]
 gi|167654983|gb|EDR99112.1| hypothetical protein ANACAC_00363 [Anaerostipes caccae DSM 14662]
          Length = 676

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/582 (36%), Positives = 338/582 (58%), Gaps = 11/582 (1%)

Query: 92  ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151
            L  D +G +T  +F      LK     G      G       R++M HP          
Sbjct: 81  CLGRDSSGTMTFTWF--NMPYLKKQIHRGEDYIFVGTAVFKNGRLMMEHPEIFKEEDYSA 138

Query: 152 NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
               ++ VY L +G++     K +++    +  + E++ + +L+K      +EA   +H 
Sbjct: 139 KQQTLQPVYPLTSGITNKTVSKAVMQTEEYIKGIREYLPEQILKKYRPMDYSEAIWNVHF 198

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG-IPINVEGKIAQKILRNIP 270
           PR   D +    A++RL +DE       + LM+++ ++E    PI V G+ A ++++++P
Sbjct: 199 PR---DKQTLVEAKKRLIFDEFFIFMAGMNLMKQEHREEKNRYPIPVCGE-ADRLIQSLP 254

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T +Q+ A+ ++ +D+  +  M R++QGDVGSGKT++A+I +    +AG Q V+MAP 
Sbjct: 255 YELTGAQKRALLEMQKDLMGEKVMNRLVQGDVGSGKTILAVILLLMCAKAGYQGVLMAPT 314

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QHYE  ++      +   ++TG++    +R+  + I + +  I+IGTHAL QD++
Sbjct: 315 EVLASQHYETFQELLGPFGVSAALLTGSVKAKEKREIYQGIKNHEYDIVIGTHALIQDAV 374

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +Y +L LVI DEQHRFGV+QR  L++K   PHVL+M+ATPIPRTL +   GD+D+S I E
Sbjct: 375 EYDRLALVITDEQHRFGVRQREILSKKGKEPHVLVMSATPIPRTLAIIMYGDLDVSVIDE 434

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R PIK  ++  +        ++  ++EG++ Y ICP +EE +     +V++  N L
Sbjct: 435 LPKNRLPIKNCVVNQSYRPNAYRFMEKQVAEGRQIYIICPMVEESEAMEGENVIQYANML 494

Query: 511 HEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            E F  SI   ++HG+M   +K+ +MD F   + ++L++TTVIEVG++V +A+++++ENA
Sbjct: 495 REQFPPSIQIGVLHGKMKPKEKQKIMDEFSERSIQILVSTTVIEVGVNVPNATVMMVENA 554

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E FGLAQLHQLRGRVGRGE  S CI +      K +  RL VL  + DGF IA +DLK R
Sbjct: 555 ERFGLAQLHQLRGRVGRGEHQSYCIFMSGVK-KKETMERLEVLNKSNDGFYIANQDLKLR 613

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
             G+  G++QSGM  F++A    +  LL+ A  DA H L ++
Sbjct: 614 GPGDFFGVRQSGMMDFVLADIYTNADLLKQA-SDAVHQLCEE 654


>gi|266623315|ref|ZP_06116250.1| ATP-dependent DNA helicase RecG [Clostridium hathewayi DSM 13479]
 gi|288864892|gb|EFC97190.1| ATP-dependent DNA helicase RecG [Clostridium hathewayi DSM 13479]
          Length = 683

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/669 (32%), Positives = 369/669 (55%), Gaps = 18/669 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL + +G+G+K     +K+       ET   +LL Y+P ++        + E+  + ++ 
Sbjct: 5   PLDSLKGIGEKTGRLFAKL-----GIET-VDELLEYYPRAYDACEEPVSVGELKPDTVMA 58

Query: 72  ITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           ++G + + +  +     +    ++ D TG +TL ++      L      G +    G++ 
Sbjct: 59  VSGVLFKSAEVKRYSHIQVITTMIRDITGSLTLTWY--NMPYLHATLKAGMRAVFRGRVV 116

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           K   R+ M  P     ++       ++ +Y    GL      + + +ALS   ++ +++ 
Sbjct: 117 KKNGRLTMEQPEIFLGDAYGEVIHSMQPIYGQTKGLPNKTIVRAVKQALSARQMVRDYMP 176

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQFKK 249
            DL  +        A   IH P    +  +   AR+RL +DE     +A+  ++ ++  +
Sbjct: 177 LDLRIRHELAEYNFAIEHIHFPTDRTELLF---ARKRLVFDEFFLFLMAVRRLKDRRVDR 233

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E   P+    ++  ++++N+P++ T +Q   + ++ +DM+ K  M R++QGDVGSGKT++
Sbjct: 234 ESHFPMKPSDEV-MRLVKNLPYALTNAQNKVLTEVFRDMTGKKVMNRLIQGDVGSGKTII 292

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRKA 367
           A++A+      G Q  +M P  +LA+QHYE +    +   I   V ++TG+M    +R A
Sbjct: 293 AVLALLETACNGFQGALMVPTEVLARQHYESMLSLFEENGIEKQVVLVTGSMTAKEKRTA 352

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            E+IA  +A II+GTHAL Q+ + Y KL LVI DEQHRFGV QR  L  K   PH+L+M+
Sbjct: 353 YEKIASHEADIIVGTHALIQEKVVYDKLALVITDEQHRFGVSQREMLGDKGDEPHILVMS 412

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +   GD+DIS I E PA R PIK  ++  +        +K  ++ G++AY 
Sbjct: 413 ATPIPRTLAIIIYGDLDISIIDELPANRLPIKNCVVDTSYRSTAYSFIKGEVAAGRQAYV 472

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           ICP +E  +     +V++    L       S+  +HG+M   +K ++M+ F  G  K+L+
Sbjct: 473 ICPMVEASEMIEAENVLDYSKKLQSALPGISVEYLHGKMKAREKNAIMERFAAGEIKVLV 532

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CIL+      + +  
Sbjct: 533 STTVVEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGKHQSYCILV-DGSGQEGTRE 591

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL++L  + DGF IA EDLK R  G+I G++QSG  +F +A      ++L+   ++   +
Sbjct: 592 RLTILSKSNDGFYIASEDLKLRGPGDIFGLRQSGDLEFKLADIFTDANILKTVSEEVNRL 651

Query: 667 LTQDPDLTS 675
           L +DP+LTS
Sbjct: 652 LDEDPELTS 660


>gi|302389602|ref|YP_003825423.1| ATP-dependent DNA helicase RecG [Thermosediminibacter oceani DSM
           16646]
 gi|302200230|gb|ADL07800.1| ATP-dependent DNA helicase RecG [Thermosediminibacter oceani DSM
           16646]
          Length = 674

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 237/668 (35%), Positives = 371/668 (55%), Gaps = 23/668 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           L + +   +GVG   +  L  + IN         +DLL + P  ++D    P   E   +
Sbjct: 3   LLSEVQYIKGVGPSRAKLLRSLGINT-------VMDLLHFFPRRYLD--LTPLNFEQGHD 53

Query: 68  RIVTITGYISQHSSFQLQKR---RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
             V     I     +++  R   R  KI + DG  + + +FF      +K+ F  G K+ 
Sbjct: 54  DSVGAFPCIVADYGYEVLTRSRMRIVKIPVTDGRRKGSAVFF--NQPYMKDAFKPGDKLV 111

Query: 125 VTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           + GKI+K      +++P +  F  +  V++  I  VY L  GL+  + +KII   L    
Sbjct: 112 LIGKIRKNYGEYEILNPEWQKFEKTDYVDYARICPVYPLTKGLTQKIMRKIIKSVLQDPL 171

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + E + + +L++      A A   IH P   + +E  + A+ER A++ELL  Q+A+++ 
Sbjct: 172 EVDEVLPQSVLKEYRLMPKASALRNIHFP---ESWEKLTKAQERFAFEELLLFQLAMMIT 228

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+    E       +  + +  L+N+PFS T+ Q+  IK+I+ D+     M R++QGDVG
Sbjct: 229 RRHLMGEKRKNTYKDFDL-KPFLKNLPFSLTEGQKKVIKEIISDLKSDRIMNRLIQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA IA+  AV+ G Q   M P  IL+ QH   +KK+     I VE++ G+MP+A 
Sbjct: 288 SGKTVVASIALYLAVKNGYQGAFMVPTEILSIQHGATLKKFLNPHGIKVEVLKGDMPKAV 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           + + L  +  G+  +++GTHAL Q+++++Y+L +V+ DEQHRFGV+QR  L +K   P V
Sbjct: 348 KEQILCDLEKGRIDVVVGTHALIQENVKFYRLGMVVTDEQHRFGVRQREALVKKGYYPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL LT   D+DIS I   P GR+ + T ++  +    V + ++  + +G 
Sbjct: 408 LVMSATPIPRTLALTIYSDLDISVIDTMPRGRQKVDTYVVDESMRTRVYKFMESEIKKGN 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           +AY +CP +EE  +    SV E    L + F    I I+HG+M   +K+ +M  F +   
Sbjct: 468 QAYVVCPAVEE-SDIGLSSVEEIGRELQDTFPHLRIGILHGKMKTEEKDRIMKDFYDKKI 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ATTV+EVG+DV  A++I++ENAE FGLAQLHQLRGRVGR +  S C+L+       
Sbjct: 527 DVLVATTVVEVGVDVPSATLIVVENAERFGLAQLHQLRGRVGRSDLKSYCVLISGSK-DM 585

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               RL+ +  T +GF IA++DL+ R  GE LG+KQ GMP+F  A       LLE  +  
Sbjct: 586 GVKARLNFMMKTHNGFEIAQKDLELRGPGEFLGVKQHGMPEFKFASLIKDLKLLETTKTL 645

Query: 663 AKHILTQD 670
           A  I+ +D
Sbjct: 646 ADEIIEKD 653


>gi|261405809|ref|YP_003242050.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. Y412MC10]
 gi|261282272|gb|ACX64243.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. Y412MC10]
          Length = 683

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/649 (34%), Positives = 363/649 (55%), Gaps = 17/649 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99
           DLL Y+P  + D   R  +SE+ +   +TI   I+     Q   R+     K+L  +   
Sbjct: 34  DLLEYYPFRYEDYRLR-SLSEVKDGDKITIQAKIASVPVLQRYGRKSRLTCKMLAENWM- 91

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
             T  +F R    LK+    GR+I +TGK  + + ++ +      F +        ++ V
Sbjct: 92  -FTATWFNR--HFLKDQLTAGREIVLTGKWDQRRMQLTVSESE--FPDKGTFRSGTLQPV 146

Query: 160 YSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           YS+   ++    +K + +AL +   ++PE + + LL+K        A   IH P  +++ 
Sbjct: 147 YSIGGKITQSWIRKTMGQALEQYGEMIPEILPQSLLRKYDLMPRKAAIMTIHQPVDSREG 206

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
           +     R R+ Y+EL   Q+ +   R   +  + G+    +    ++ +R+ PF  T +Q
Sbjct: 207 Q---EGRRRMVYEELFLFQLKMQAFRALNRGRMDGVVHTADNATIREFVRSFPFELTDAQ 263

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +IL DM     M R+LQGDVGSGKT+VA IA+   V +G Q  +M P  ILA+QH
Sbjct: 264 KKVELEILHDMRSPYCMNRLLQGDVGSGKTIVAAIALFTTVRSGFQGALMVPTEILAEQH 323

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
              ++K  +   I V ++TG++    R+  L  +  G   I++GTHAL QD + + +L L
Sbjct: 324 MRSLQKLFEPFGITVGLLTGSVTGKKRKDLLASLQMGLTDIVVGTHALIQDDVYFRELGL 383

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           V+ DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ GD+D+S ++E+P GR P
Sbjct: 384 VVTDEQHRFGVNQRSVLRRKGYNPDVLTMTATPIPRTLAITAFGDMDVSTLSERPKGRIP 443

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I T  +    +D V+  +   +++G++AY I P IEE  + + ++ ++    + + F + 
Sbjct: 444 ITTYWVKHELMDRVLGFISREVNQGRQAYLIAPLIEESDKLDVQNAIDLHVQMQQAFPAY 503

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S+ ++HGRM+  +K+ VM  F +   +LLI+TTV+EVG+DV +A+++II +A+ FGL+QL
Sbjct: 504 SVGLLHGRMTPAEKDEVMRQFYSNEVQLLISTTVVEVGVDVPNATLMIIMDADRFGLSQL 563

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG+  S C+L+  P  S+    R+ V+  TEDGF ++  DL+ R  G+  G 
Sbjct: 564 HQLRGRVGRGQHASYCVLVADPK-SEVGQERMQVMTETEDGFEVSRRDLELRGPGDFFGT 622

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           KQSG+P+F +A       ++E AR DA  +++     TS   + +R  L
Sbjct: 623 KQSGLPEFRLADMVADFKVVEEARGDAAALVSDSSFWTSPEYEPLRDFL 671


>gi|311106511|ref|YP_003979364.1| ATP-dependent DNA helicase RecG [Achromobacter xylosoxidans A8]
 gi|310761200|gb|ADP16649.1| ATP-dependent DNA helicase RecG [Achromobacter xylosoxidans A8]
          Length = 696

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 244/672 (36%), Positives = 362/672 (53%), Gaps = 28/672 (4%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           +G GK  +    K+ N G      F+    + P  + D      IS++       + G I
Sbjct: 16  KGAGKAMTDTERKLRNLGLVLPEDFV---LHLPLRYEDETRIVPISDLRPGFAGQVEGEI 72

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITL--LFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
           ++ S    + RR     L D +GE+ L  L FY   +   +V   G+++   G+++    
Sbjct: 73  TK-SEVSYRPRRQLTATLADDSGELQLRWLNFYPSQQKQVSV---GKRLRARGEVRGGLF 128

Query: 135 RIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
              MVHP      + D   P  +  VY    GL     ++ I +AL R   L + +  + 
Sbjct: 129 GRQMVHPRM---TNADAPLPTALTPVYPSTEGLPQLTLRRAIAQALDRAD-LSDTLPDEA 184

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQ--F 247
             +   P    A   +H P + +      +   PA  R+ +DELLA Q++L   R     
Sbjct: 185 RARYDLPPFEPAIRALHTPAQGESEQALLDRVHPAWRRIKFDELLAQQLSLAAARAARRV 244

Query: 248 KKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           K+   +P  N  G +  K+   +PF  T +QE  +++I  D+++   M R+LQGDVGSGK
Sbjct: 245 KEAESLPARNEAGGLVAKLYEALPFKLTGAQERVVQEISADLAKPYPMHRLLQGDVGSGK 304

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA IA A A+ +G Q  +MAP  ILA+QH+  +  + Q   + V  ++G++    RR+
Sbjct: 305 TVVAAIAAAQAIASGAQVALMAPTEILAEQHFRKLVSWLQPLGVNVAWLSGSLSAKARRE 364

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA------TA 420
           A    A G   +I+GT AL QD +++++L L IVDEQHRFGV QRL LT+K         
Sbjct: 365 AAAAAADGSVQLIVGTQALIQDHVEFHRLGLSIVDEQHRFGVGQRLALTRKGETVRGRNV 424

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH L M+ATPIPRTL +T   D+D+S I E P GR P+ T ++   R +EVI  +     
Sbjct: 425 PHQLNMSATPIPRTLAMTFFADLDVSVIDELPPGRSPVLTKLVSDARREEVIAHIAQAAR 484

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
            G++AYW+CP +EE +    ++ V+ +  +        I ++HGR+   +K +VM +F++
Sbjct: 485 GGQQAYWVCPLVEESEALELQTAVDTYEGMRVDLPDLRIGLVHGRLPQAEKAAVMQAFRD 544

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  P
Sbjct: 545 GEVDLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCVLLYQTP 604

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+ +  RL  +  T DGF IA  DL+QR  GE LG +QSGM     A  E   ++ E A
Sbjct: 605 LSQVARERLRAMFETSDGFEIARRDLEQRGPGEFLGTRQSGMALLRFADLETDAAIAEDA 664

Query: 660 RKDAKHILTQDP 671
           R  A  +  + P
Sbjct: 665 RDAAVWLRAEHP 676


>gi|291557450|emb|CBL34567.1| ATP-dependent DNA helicase RecG [Eubacterium siraeum V10Sc8a]
          Length = 677

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 246/672 (36%), Positives = 367/672 (54%), Gaps = 35/672 (5%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE-ISEERI 69
           +P+   +GVG+K +  L K+        T  + L  ++P  +ID +    IS+ +++   
Sbjct: 10  SPVCYIKGVGEKRAKLLEKL------GITTALQLAEHYPRGYIDFNETTAISDLVNDGEN 63

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF---YRKTEM-LKNVFFEGRKITV 125
             +   +++       +   +K+L++DGTG++ + FF   Y  T + L N +        
Sbjct: 64  HVVKAIVTKKFPAYYGRINIFKVLVSDGTGDMLITFFNSDYSFTRLKLDNEY------CF 117

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            GK+     R  M  P  +F +SQD N   +   YSL TG+S  +    I   L R    
Sbjct: 118 YGKMAGDFLRKEMNSP--VFIDSQDPN--KLMPRYSLTTGISQGIMSNCIKNVL-RDFTF 172

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PE +   L+ K +  S   A   IH P   + ++    A+ RL ++EL   Q+ L  M+ 
Sbjct: 173 PEHLTDTLMDKYNLISYDNALRWIHFPENKEQYD---KAKYRLTFEELFLLQLGLKSMKN 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + KK  G P+  E K   +   ++PF+ T +Q  AI +   DM +   M R+LQGDVGSG
Sbjct: 230 RKKKLAGAPM--ESKSIDEYYSSLPFTLTGAQIRAISECCDDMQKSVPMNRLLQGDVGSG 287

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT VA  A   A   G Q+ +MAP  ILA+QHY+ + K+     + + ++TG+   A ++
Sbjct: 288 KTAVAAGAAYFAYLNGYQSTLMAPTEILAKQHYDTLYKFLAPLGVTIALLTGSQTPAQKK 347

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           +  + IA GQ  + +GT AL Q S ++  L LVI DEQHRFGV QR  L  K   PHVL+
Sbjct: 348 QIRQLIADGQIDVAVGTQALIQKSTKFSSLGLVITDEQHRFGVGQRAALGSKGNEPHVLV 407

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPRTL +   GD+DIS + E P GR PI+T  +  +  + +   +   ++ G +A
Sbjct: 408 MSATPIPRTLGMIIYGDLDISILDEMPKGRLPIRTYAVDTSYRERLYRFILKYVNNGFQA 467

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE   S   +  E  NSL     +++   ++HG+M   DK++VM  FK+   K
Sbjct: 468 YIVCPLIEEGV-SEKAAATEYINSLQNTCLANVPTGLLHGKMKQADKDAVMQDFKDNKLK 526

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT+VIEVG+DV +A +++IENAE FGL+QLHQLRGRVGRG E S CIL+     +K+
Sbjct: 527 VLVATSVIEVGVDVPNAVVMVIENAEQFGLSQLHQLRGRVGRGTEQSHCILVTD---NKS 583

Query: 604 SYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            YT  R+  +  T DGF IA EDLK R  G+  G KQ G+P+  IA       +L++  +
Sbjct: 584 DYTKQRMDTMVKTSDGFEIANEDLKLRGPGDFFGSKQHGLPQLKIADIYADLDILKMTGE 643

Query: 662 DAKHILTQDPDL 673
            A  IL  D  L
Sbjct: 644 AADDILRDDSRL 655


>gi|167750970|ref|ZP_02423097.1| hypothetical protein EUBSIR_01955 [Eubacterium siraeum DSM 15702]
 gi|167656149|gb|EDS00279.1| hypothetical protein EUBSIR_01955 [Eubacterium siraeum DSM 15702]
          Length = 677

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 246/672 (36%), Positives = 367/672 (54%), Gaps = 35/672 (5%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE-ISEERI 69
           +P+   +GVG+K +  L K+        T  + L  ++P  +ID +    IS+ +++   
Sbjct: 10  SPVCYIKGVGEKRAKLLEKL------GITTALQLAEHYPRGYIDFNETTAISDLVNDGEN 63

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF---YRKTEM-LKNVFFEGRKITV 125
             +   +++       +   +K+L++DGTG++ + FF   Y  T + L N +        
Sbjct: 64  HVVKAIVTKKFPAYYGRINIFKVLVSDGTGDMLITFFNSDYSFTRLKLDNEY------CF 117

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            GK+     R  M  P  +F +SQD N   +   YSL TG+S  +    I   L R    
Sbjct: 118 YGKMAGDFLRKEMNSP--VFIDSQDPN--KLMPRYSLTTGISQGIMSNCIKNVL-RDFTF 172

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PE +   L+ K S  S   A   IH P   + ++    A+ RL ++EL   Q+ L  M+ 
Sbjct: 173 PEHLSDTLMDKYSLISYDNALRWIHFPENKEQYD---KAKYRLTFEELFLLQLGLKSMKN 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + K+  G P+  E K   +   ++PF+ T +Q  AI +   DM +   M R+LQGDVGSG
Sbjct: 230 RKKRLAGAPM--ESKSIDEYYSSLPFTLTGAQIRAISECCDDMQKSVPMNRLLQGDVGSG 287

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT VA  A   A   G Q+ +MAP  ILA+QHY+ + K+     + + ++TG+   A ++
Sbjct: 288 KTAVAAGAAYFAYLNGYQSTLMAPTEILAKQHYDTLYKFLAPLGVTIALLTGSQTPAQKK 347

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           +  + IA GQ  + +GT AL Q S ++  L LVI DEQHRFGV QR  L  K   PHVL+
Sbjct: 348 QIRQLIADGQIDVAVGTQALIQKSTRFSSLGLVITDEQHRFGVGQRAALGSKGNEPHVLV 407

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPRTL +   GD+DIS + E P GR PI+T  +  +  + +   +   ++ G +A
Sbjct: 408 MSATPIPRTLGMIIYGDLDISILDEMPKGRLPIRTYAVDTSYRERLYRFILKYVNNGFQA 467

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE   S   +  E  NSL     +++   ++HG+M   DK++VM  FK+   K
Sbjct: 468 YIVCPLIEEGV-SEKAAATEYINSLQNTCLANVPTGLLHGKMKQADKDAVMQDFKDNKLK 526

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT+VIEVG+DV +A +++IENAE FGL+QLHQLRGRVGRG E S CIL+     +K+
Sbjct: 527 VLVATSVIEVGVDVPNAVVMVIENAEQFGLSQLHQLRGRVGRGTEQSHCILVTD---NKS 583

Query: 604 SYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            YT  R+  +  T DGF IA EDLK R  G+  G KQ G+P+  IA       +L++  +
Sbjct: 584 DYTKQRMDTMVKTSDGFEIANEDLKLRGPGDFFGSKQHGLPQLKIADIYADLDILKMTGE 643

Query: 662 DAKHILTQDPDL 673
            A  IL  D  L
Sbjct: 644 AADDILRDDSRL 655


>gi|223940295|ref|ZP_03632153.1| ATP-dependent DNA helicase RecG [bacterium Ellin514]
 gi|223891062|gb|EEF57565.1| ATP-dependent DNA helicase RecG [bacterium Ellin514]
          Length = 706

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 244/696 (35%), Positives = 371/696 (53%), Gaps = 57/696 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKI--INCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +PL  PL   RGVG +    L+++     G        DLL + P  + DR Y   I+E+
Sbjct: 18  SPLARPLKELRGVGTEREAQLARLGLFTVG--------DLLLHRPRRYEDRRYFRNIAEL 69

Query: 65  SEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
             +   T  G I       F+   R  ++I+L+DGTG +   ++      ++N F +G +
Sbjct: 70  QLDEASTTRGTIVALGLKRFKKGMRSVFEIILDDGTGRLHCRWW--NLPFMQNYFAQGDE 127

Query: 123 ITVTGKIKKLKNRIIMVHPHY-IFHNSQD--VNFPLIEAVYSLPTGL-----------SV 168
           + V GK+  LK R I  HP   + +  ++  ++   I  +Y L  G+           ++
Sbjct: 128 VFVFGKLNSLKPRTI-DHPETEVIYGGEESSIHINRIAPIYPLTEGMPQRWIRSFIHRTL 186

Query: 169 DLFKKIIVEALSRLPVLPEWIEKDLLQK---------------KSFPSIAEAFNIIHNPR 213
             F+K IVE   +L    + +      +               K  PS A A +++H P 
Sbjct: 187 GEFEKEIVEPWPKLCEETQGVAASFRLRDYGLTSKERPEAQGYKELPSKANALHMVHFPE 246

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFS 272
              D E    AR RLA DE +  Q  + L RK+F+ K    P   +    +  L  + F+
Sbjct: 247 AIGDIEL---ARRRLALDEFIELQREIQLRRKRFELKAQSRPCAGDNHFIKPFLAKLGFT 303

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T++Q   ++++ +DM   + M R+LQGDVGSGKT+V+      A+E+G    +MAP  I
Sbjct: 304 LTEAQTKVLRELRKDMGGAHPMRRLLQGDVGSGKTVVSACCALMALESGYNVALMAPTEI 363

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA----LERIAHGQAH---IIIGTHAL 385
           LA+QH +  +++ +   I V + TG+       K     L  +A   +H   + IGTHAL
Sbjct: 364 LAEQHLQNFRRWFEPLGIRVIMQTGSQKSVRADKTAGPMLPEVAESTSHQLTMAIGTHAL 423

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            +D      L LVI+DEQH+FGV QR KL +K   PH+L+MTATPIPRTL LT  G++D+
Sbjct: 424 IEDGFALNHLGLVIIDEQHKFGVTQREKLLRKGNYPHLLVMTATPIPRTLGLTLYGELDV 483

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I E P GR  IKT +   +++ +V   ++  L+EG++AY + P++EE   +  ++V +
Sbjct: 484 STIDELPTGRGRIKTFVRTADKLPKVWAFIREKLAEGRQAYVVYPRVEESGPTGLKAVTK 543

Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            F +L        I ++HGR+   +KE VM  F+     +L+AT +IEVG+DV +A+I++
Sbjct: 544 EFENLKSLLAPYRIGLLHGRLKAAEKELVMTGFRKNQVNILLATPLIEVGVDVPNATIMV 603

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           IEN+E FGLAQLHQLRGR+GRG   S CIL+     +  +  RL VL+ T DGF IAE D
Sbjct: 604 IENSEQFGLAQLHQLRGRIGRGAHDSFCILIAAVK-NAEARQRLQVLEETNDGFRIAEAD 662

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           LK R  GE+LG +QSG+P F         +L+ +AR
Sbjct: 663 LKIRGPGELLGQQQSGLPNFKFGNLAEDLALIRLAR 698


>gi|222097300|ref|YP_002531357.1| ATP-dependent DNA helicase recg [Bacillus cereus Q1]
 gi|221241358|gb|ACM14068.1| ATP-dependent DNA helicase RecG [Bacillus cereus Q1]
          Length = 657

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/631 (35%), Positives = 362/631 (57%), Gaps = 27/631 (4%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE--I 101
           LL + P  + D +    ++E+  +  VT+ G +      Q   ++  ++ +    G   I
Sbjct: 9   LLEHFPYRYED-YAMKDLAEVKHDERVTVEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLI 67

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
           T + F R     K        +T+TGK  + +  I +   H+       V    +E VYS
Sbjct: 68  TAVCFNRP--YYKQKLNLDETVTITGKWDQHRQTIAVSELHF----GPVVRQQEVEPVYS 121

Query: 162 LPTGLSVDLFKKIIVEAL-----SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
           +   L+V   ++ I +AL     S + VLP+ +   L + K  P   EA   +H P   +
Sbjct: 122 VKGKLTVKQMRRFIAQALKEYGDSIVEVLPDGL---LSRYKLLPRY-EALRALHFPSGQE 177

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
           D +    AR R  Y+E    Q+ +  +RK + +   G    +  +  Q+ +  +PF  T 
Sbjct: 178 DLK---QARRRFVYEEFFLFQLKMQTLRKMERENSKGTKKEIPSEELQEFIDALPFPLTG 234

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q   + +I++DM+   RM R+LQGDVGSGKT+VA I + AA  A  Q  +M P  ILA+
Sbjct: 235 AQSRVVDEIMKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMVPTEILAE 294

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY+ + +      + VE++T ++    RR+ L ++  G+  I++GTHAL QD + +++L
Sbjct: 295 QHYQSLAETFSRFGMKVELLTSSVKGVRRREILAKLEQGEIDILVGTHALIQDEVIFHRL 354

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LVI DEQHRFGV QR  L +K  +P VL MTATPIPRTL +T+ G++D+S I E PAGR
Sbjct: 355 GLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGR 414

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           K I+T     + +D V+  ++  + +G++AY ICP IEE ++ + ++ ++  + L  H+ 
Sbjct: 415 KVIETYWAKHDMLDRVLGFVEKEIKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQ 474

Query: 516 S--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               + ++HGR+S  +KE +M  F     ++L++TTV+EVG++V +A++++I +AE FGL
Sbjct: 475 GKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGL 534

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           +QLHQLRGRVGRG E S C+L+  P  S+    R+ ++  T DGF+++E+DL+ R  G+ 
Sbjct: 535 SQLHQLRGRVGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDF 593

Query: 634 LGIKQSGMPKFLIAQPELHD-SLLEIARKDA 663
            G KQSG+P+F +A   +HD   LE AR+DA
Sbjct: 594 FGSKQSGLPEFKVADM-VHDYRALETARQDA 623


>gi|145219225|ref|YP_001129934.1| ATP-dependent DNA helicase RecG [Prosthecochloris vibrioformis DSM
           265]
 gi|145205389|gb|ABP36432.1| ATP-dependent DNA helicase RecG [Chlorobium phaeovibrioides DSM
           265]
          Length = 705

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 230/688 (33%), Positives = 368/688 (53%), Gaps = 38/688 (5%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           + L   +G+G K      KI     A  +   +L  Y P  ++DR     I+ +    + 
Sbjct: 5   SSLQALKGLGPK------KIEILQEAGISSLENLFDYWPRRYLDRRAMNSIAGLRMGEMA 58

Query: 71  TITGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           T+ G +      Q  +    +K+ L D +G + L +F R           G  + V GK+
Sbjct: 59  TVVGTVRSAGIEQGGRGMARFKVKLADRSGVLDLTWF-RGARYFSRAIVPGDILAVYGKV 117

Query: 130 KKLKNRIIMVHPHY------------------IFHNSQDVN-FPLIEAVYSLPTGLSVDL 170
                +  M HP +                  +F+  + +  +P  EA+    +GL+   
Sbjct: 118 GYFGRQAQMQHPDFDRLGREGADRDKEGSDAELFNTGRIIPLYPTSEAMKR--SGLASRQ 175

Query: 171 FKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
            + +I  A   R P   E +   +L+  S   ++EA+  +H P   +  +    A  R+ 
Sbjct: 176 LRGLIARAFDIRQPGGTENLSSGILKAHSLMPLSEAYRELHQPSSPERLQM---AEYRMK 232

Query: 230 YDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
           + EL   Q++  L R+  +     +  +  G+    +   +P+S T +Q++AI+++ +D+
Sbjct: 233 WTELFYAQLSFALRRRALRHTRTAVQFSHSGEFTAALHAALPYSLTGAQKNAIRELYRDL 292

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
             ++ M R++QGDVGSGKT+VA+ AMA A +   Q+V MAP  ILA QH+  +K+  +  
Sbjct: 293 KGESPMQRLVQGDVGSGKTIVAMFAMALAADNNLQSVFMAPTEILAVQHWLGMKRLFEPL 352

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            I V ++TG  P+  R   L  +  G+ HI +GTHAL Q  + ++ L LV++DEQHRFGV
Sbjct: 353 GIQVCLLTGRQPKKVREALLMELREGRVHIAVGTHALLQHDVDFHSLGLVVIDEQHRFGV 412

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            QR  L  KA  PHVLLMTATPIPRTL +   GD+D+S I E P GR+P++T++      
Sbjct: 413 LQRKTLQDKAQHPHVLLMTATPIPRTLTMGVFGDLDVSLIREMPTGRQPVRTLVQQEADK 472

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMS 526
             V E L+  ++ G++ Y + P +EE ++ + ++ VE F+ L         + +IHG+M+
Sbjct: 473 PRVFEFLRAQVAAGRQGYIVYPLVEESEKVDLKAAVESFDELSASVFPDLRLGLIHGQMT 532

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              KE VM+ F++G   +L+ TTVIEVG+DV +A++++I +AE FGLAQLHQLRGRVGRG
Sbjct: 533 PDMKEVVMEQFRSGLIDILVGTTVIEVGVDVANATVMVIMHAERFGLAQLHQLRGRVGRG 592

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            + SSC LLY   L+ +   RL  + +T DGF+I+E D   R  G +LG +QSG    L 
Sbjct: 593 TQASSCFLLY-AKLTSDGKERLDAMASTTDGFVISEIDAAIRGAGNLLGKEQSGTLSGLK 651

Query: 647 AQPELHD-SLLEIARKDAKHILTQDPDL 673
                 D  +++ AR+ A  ++ +D +L
Sbjct: 652 MADLTRDFDIMQSAREAAFSLVAEDGEL 679


>gi|329926589|ref|ZP_08281002.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. HGF5]
 gi|328939130|gb|EGG35493.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. HGF5]
          Length = 683

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/649 (34%), Positives = 363/649 (55%), Gaps = 17/649 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99
           DLL Y+P  + D   R  +SE+ +   +TI   I+     Q   R+     K+L  +   
Sbjct: 34  DLLEYYPFRYEDYRLR-SLSEVKDGDKITIQAKIASVPVLQRYGRKSRLTCKMLAENWM- 91

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
             T  +F R    LK+    GR+I +TGK  + + ++ +      F +        ++ V
Sbjct: 92  -FTATWFNR--HFLKDQLTAGREIVLTGKWDQRRMQLTVSESE--FPDKGAFRSGTLQPV 146

Query: 160 YSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           YS+   ++    +K + +AL +   ++PE + + LL+K        A   IH P  +++ 
Sbjct: 147 YSIGGKITQSWIRKTMGQALEQYGEMIPEILPQSLLRKYDLMPRKAAIMTIHQPVDSREG 206

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
           +     R R+ Y+EL   Q+ +   R   +  + G+    +    ++ +R+ PF  T +Q
Sbjct: 207 Q---EGRRRMVYEELFLFQLKMQAFRALNRGRMDGVVHTADNATIREFVRSFPFELTDAQ 263

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +IL DM     M R+LQGDVGSGKT+VA IA+   V +G Q  +M P  ILA+QH
Sbjct: 264 KKVELEILHDMRSPYCMNRLLQGDVGSGKTIVAAIALFTTVRSGFQGALMVPTEILAEQH 323

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
              ++K  +   I V ++TG++    R+  L  +  G   I++GTHAL QD + + +L L
Sbjct: 324 MRSLQKLFEPFGITVGLLTGSVTGKKRKDLLASLQMGLTDIVVGTHALIQDDVYFRELGL 383

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           V+ DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ GD+D+S ++E+P GR P
Sbjct: 384 VVTDEQHRFGVNQRSVLRRKGYNPDVLTMTATPIPRTLAITAFGDMDVSTLSERPKGRIP 443

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I T  +    +D V+  +   +++G++AY I P IEE  + + ++ ++    + + F + 
Sbjct: 444 ITTYWVKHELMDRVLGFISREVNQGRQAYLIAPLIEESDKLDVQNAIDLHVQMQQAFPAY 503

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S+ ++HGRM+  +K+ VM  F +   +LLI+TTV+EVG+DV +A+++II +A+ FGL+QL
Sbjct: 504 SVGLLHGRMTPAEKDEVMRQFYSNEVQLLISTTVVEVGVDVPNATLMIIMDADRFGLSQL 563

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG+  S C+L+  P  S+    R+ V+  TEDGF ++  DL+ R  G+  G 
Sbjct: 564 HQLRGRVGRGQHASYCVLVADPK-SEVGQERMQVMTETEDGFEVSRRDLELRGPGDFFGT 622

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           KQSG+P+F +A       ++E AR DA  +++     TS   + +R  L
Sbjct: 623 KQSGLPEFRLADMVADFKVVEEARGDAAALVSDSSFWTSPEYEPLRDFL 671


>gi|163941593|ref|YP_001646477.1| ATP-dependent DNA helicase RecG [Bacillus weihenstephanensis KBAB4]
 gi|163863790|gb|ABY44849.1| ATP-dependent DNA helicase RecG [Bacillus weihenstephanensis KBAB4]
          Length = 685

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 237/675 (35%), Positives = 380/675 (56%), Gaps = 57/675 (8%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 11  PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 64  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 121

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNF-PLI-----EAVYSLPTGLSVDLFKKIIVEAL---- 179
            + +  I +           ++NF P++     E VYS+   L+V   ++ + +A     
Sbjct: 122 DQHRQTIAV----------SELNFGPVVRQQEVEPVYSVKGKLTVKQMRRFVAQAFKEYG 171

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
            S + VLP+     LL +    S  EA   +H P   +D +    AR R  Y+E    Q+
Sbjct: 172 DSIVEVLPD----GLLSRYKLLSRYEALRGLHFPVGQEDLK---QARRRFVYEEFFLFQL 224

Query: 239 ALLLMRKQ-------FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            +  +RK         KKEI +   VE    Q+    +PF  T +Q   + +I++DM   
Sbjct: 225 KMQTLRKMERENSKGTKKEISL---VE---LQEFTDALPFPLTGAQRRVVDEIMKDMISP 278

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            RM R+LQGDVGSGKT+VA IA+ AA  A  Q  +M P  ILA+QHY+ + +   +  + 
Sbjct: 279 YRMNRLLQGDVGSGKTVVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMK 338

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++T ++  A RR+ L R+  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR
Sbjct: 339 VELLTSSVKGARRREILSRLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQR 398

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             L +K  +P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V
Sbjct: 399 RVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRV 458

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDID 529
           +  ++  + +G++AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +
Sbjct: 459 LGFVEKEMKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQE 518

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE +M  F     ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E 
Sbjct: 519 KEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQ 578

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+  P  S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A  
Sbjct: 579 SYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM 637

Query: 650 ELHD-SLLEIARKDA 663
            +HD   LE AR+DA
Sbjct: 638 -VHDYRALETARQDA 651


>gi|310642729|ref|YP_003947487.1| ATP-dependent DNA helicase recg [Paenibacillus polymyxa SC2]
 gi|309247679|gb|ADO57246.1| ATP-dependent DNA helicase RecG [Paenibacillus polymyxa SC2]
          Length = 682

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 234/659 (35%), Positives = 367/659 (55%), Gaps = 20/659 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99
           D+L Y+P  + D   R  +SE+ +   +T+   I      Q   R+     K++  D   
Sbjct: 33  DMLEYYPFRYEDYRLR-SLSEVKDGDKITVQAKIMGIPVLQRYGRKSRLTCKLMAEDWM- 90

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
             T  +F R    LK+    GR+I VTGK   LK R+ M      F +        I+ V
Sbjct: 91  -FTATWFNR--HFLKDQLTSGREIVVTGKWD-LK-RMQMTVADSEFPDKGVARSGTIQPV 145

Query: 160 YSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           YS+   ++    +K + + L +   ++PE +   L++K S     +A   IH P+  ++ 
Sbjct: 146 YSIGGKITQSWMRKTMNQTLQQFGEMIPEILPDLLVRKYSMMPRKQAIAGIHQPQDNREG 205

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +    AR R+ Y+EL   Q+ +   R   + +  G+   V+    ++ +R +PF  T +Q
Sbjct: 206 Q---EARRRMVYEELFLFQLKMQAFRALNRGRADGVVHTVDNATIREFVRALPFELTDAQ 262

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +IL D+     M R+LQGDVGSGKT+VA I + A V +G Q  +M P  ILA+QH
Sbjct: 263 KKVELEILHDLRSPYCMNRLLQGDVGSGKTVVAAIGLFATVRSGFQGALMVPTEILAEQH 322

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
              + K  +   I V ++TG+     R++ L  +  G   I++GTHAL Q+ + + +L L
Sbjct: 323 MRSLHKLFEPFGISVGLLTGSTTGKKRKELLAALQMGLLDIVVGTHALIQEDVYFRQLGL 382

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           V+ DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ GD+D+S I+E+P GR P
Sbjct: 383 VVTDEQHRFGVNQRSVLRRKGYNPDVLTMTATPIPRTLAITAFGDMDVSTISERPKGRIP 442

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I T  +    +D V+  +   + +G++AY ICP IEE ++ + ++ ++    + + F   
Sbjct: 443 ISTYWVKHELMDRVLGFISREVDQGRQAYLICPLIEESEKLDVQNAIDLHIQMQQAFPHY 502

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            + ++HGRM+  +KE VM SF     +LL++TTV+EVG+DV +A+++II +A+ FGL+QL
Sbjct: 503 RVGLLHGRMTPAEKEEVMRSFYANEVQLLVSTTVVEVGVDVPNATLMIIMDADRFGLSQL 562

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG   S C+L+  P  S+    R+ V+ +T+DGF +A  DL  R  G+  G 
Sbjct: 563 HQLRGRVGRGAHASYCVLIADPK-SEVGQERMKVMTDTDDGFEVARRDLDLRGPGDFFGT 621

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           KQSG+P+F +A       +LE AR+DA  ++      TS + +++R  L   Q  + FQ
Sbjct: 622 KQSGLPEFRLADMVADFEVLEKAREDATDLIKDSSFWTSPQYEALRGYL---QKEQIFQ 677


>gi|75908279|ref|YP_322575.1| ATP-dependent DNA helicase RecG [Anabaena variabilis ATCC 29413]
 gi|75702004|gb|ABA21680.1| ATP-dependent DNA helicase RecG [Anabaena variabilis ATCC 29413]
          Length = 822

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/650 (35%), Positives = 373/650 (57%), Gaps = 23/650 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99
           DLLFY+P   ID   +  I E+     VTI   + + + F   K +   IL   L D TG
Sbjct: 153 DLLFYYPRDHIDYARQVNIRELEAGETVTIVATVKKCNCFTSPKNQKLSILELILKDNTG 212

Query: 100 EITLLFFYRKT--------EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD 150
           +I +  F            E LK  +  G  +   G +K  K  + + +P   +  N  D
Sbjct: 213 QIKISRFSAGARFTSRAWQESLKRRYPVGSVLAACGLVKGTKYGLTLDNPELEVLANPGD 272

Query: 151 ----VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
               +    +  +YSL  G+   + ++ ++ AL     L + + K L +K     + +A 
Sbjct: 273 TIESLTMGRVVPIYSLTEGVMASMVRQAVLAALPAAVHLKDPLPKGLREKYGLMELKDAI 332

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKI 265
             IH P ++   +    AR RL +DE    Q+ LL  ++Q K  +    +  +G++ +  
Sbjct: 333 ANIHFPDESATLQV---ARRRLVFDEFFYLQLGLLQRQQQAKAIQTSAILAPKGQLIENF 389

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF  T +Q+  + DIL D+ +   M R++QGDVGSGKT+VA++A+ AA+++G QA 
Sbjct: 390 YEILPFQLTGAQQRVLNDILNDLQKSTPMNRLVQGDVGSGKTVVAVVAILAAIQSGYQAA 449

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  +LA+QHY  +  +     + VE++TG+     RR+   ++  G+  +++GTHAL
Sbjct: 450 LMAPTEVLAEQHYRKLVSWFNLLHLPVELLTGSTKTVKRRQIHSQLETGELPLLVGTHAL 509

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            QD + + +L LV++DEQHRFGV+QR  L QK   PHVL MTATPIPRTL LT  GD+++
Sbjct: 510 IQDPVNFQRLGLVVIDEQHRFGVKQRALLQQKGEQPHVLTMTATPIPRTLALTIHGDMNV 569

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S+I E P GR+ I+T ++   +  +  + ++  +++G++ Y + P +EE ++ + RS VE
Sbjct: 570 SQIDELPPGRQKIQTTMLSGQQRPQAYDLIRREIAQGRQTYVVLPLVEESEKLDLRSAVE 629

Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
               L E       + ++HGRMS  +K+  +  F++   ++L++TTV+EVG+DV +A+++
Sbjct: 630 EHQKLQESVFPEFQVGLLHGRMSSAEKDEAITKFRDNETQILVSTTVVEVGVDVPNATVM 689

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +IENAE FGL+QLHQLRGRVGRG   S C+L+     S ++  RL VL+ ++DGF I+E 
Sbjct: 690 LIENAERFGLSQLHQLRGRVGRGAAQSYCLLM-SSSRSPDAQQRLKVLEQSQDGFFISEM 748

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           D++ R  GE+LG +QSG+P F +A     + +L +AR+ A+ ++  D  L
Sbjct: 749 DMRFRGPGEVLGTRQSGVPDFTLASLVEDEEVLLLARQAAEKVIEIDVSL 798


>gi|229134663|ref|ZP_04263472.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST196]
 gi|229168594|ref|ZP_04296317.1| ATP-dependent DNA helicase recG [Bacillus cereus AH621]
 gi|228615000|gb|EEK72102.1| ATP-dependent DNA helicase recG [Bacillus cereus AH621]
 gi|228648709|gb|EEL04735.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST196]
          Length = 682

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 237/675 (35%), Positives = 380/675 (56%), Gaps = 57/675 (8%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNF-PLI-----EAVYSLPTGLSVDLFKKIIVEAL---- 179
            + +  I +           ++NF P++     E VYS+   L+V   ++ + +A     
Sbjct: 119 DQHRQTIAV----------SELNFGPVVRQQEVEPVYSVKGKLTVKQMRRFVAQAFKEYG 168

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
            S + VLP+     LL +    S  EA   +H P   +D +    AR R  Y+E    Q+
Sbjct: 169 DSIVEVLPD----GLLSRYKLLSRYEALRGLHFPVGQEDLK---QARRRFVYEEFFLFQL 221

Query: 239 ALLLMRKQ-------FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            +  +RK         KKEI +   VE    Q+    +PF  T +Q   + +I++DM   
Sbjct: 222 KMQTLRKMERENSKGTKKEISL---VE---LQEFTDALPFPLTGAQRRVVDEIMKDMISP 275

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            RM R+LQGDVGSGKT+VA IA+ AA  A  Q  +M P  ILA+QHY+ + +   +  + 
Sbjct: 276 YRMNRLLQGDVGSGKTVVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMK 335

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++T ++  A RR+ L R+  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR
Sbjct: 336 VELLTSSVKGARRREILSRLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQR 395

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             L +K  +P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V
Sbjct: 396 RVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRV 455

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDID 529
           +  ++  + +G++AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +
Sbjct: 456 LGFVEKEIKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQE 515

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE +M  F     ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E 
Sbjct: 516 KEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQ 575

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+  P  S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A  
Sbjct: 576 SYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM 634

Query: 650 ELHD-SLLEIARKDA 663
            +HD   LE AR+DA
Sbjct: 635 -VHDYRALETARQDA 648


>gi|229013038|ref|ZP_04170203.1| ATP-dependent DNA helicase recG [Bacillus mycoides DSM 2048]
 gi|228748292|gb|EEL98152.1| ATP-dependent DNA helicase recG [Bacillus mycoides DSM 2048]
          Length = 682

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 237/675 (35%), Positives = 380/675 (56%), Gaps = 57/675 (8%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNF-PLI-----EAVYSLPTGLSVDLFKKIIVEAL---- 179
            + +  I +           ++NF P++     E VYS+   L+V   ++ + +A     
Sbjct: 119 DQHRQTIAV----------SELNFGPVVRQQEVEPVYSVKGKLTVKQMRRFVAQAFKEYG 168

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
            S + VLP+     LL +    S  EA   +H P   +D +    AR R  Y+E    Q+
Sbjct: 169 DSIVEVLPD----GLLSRYKLLSRYEALRGLHFPVGQEDLK---QARRRFVYEEFFLFQL 221

Query: 239 ALLLMRKQ-------FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            +  +RK         KKEI +   VE    Q+    +PF  T +Q   + +I++DM   
Sbjct: 222 KMQTLRKMERENSKGTKKEISL---VE---LQEFTDALPFPLTGAQRRVVDEIMKDMISP 275

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            RM R+LQGDVGSGKT+VA IA+ AA  A  Q  +M P  ILA+QHY+ + +   +  + 
Sbjct: 276 YRMNRLLQGDVGSGKTVVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLTETFSHFGMK 335

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++T ++  A RR+ L R+  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR
Sbjct: 336 VELLTSSVKGARRREILSRLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQR 395

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             L +K  +P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V
Sbjct: 396 RVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRV 455

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDID 529
           +  ++  + +G++AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +
Sbjct: 456 LGFVEKEIKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQE 515

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE +M  F     ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E 
Sbjct: 516 KEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQ 575

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+  P  S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A  
Sbjct: 576 SYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM 634

Query: 650 ELHD-SLLEIARKDA 663
            +HD   LE AR+DA
Sbjct: 635 -VHDYRALETARQDA 648


>gi|110640048|ref|YP_680258.1| ATP-dependent DNA helicase RecG [Cytophaga hutchinsonii ATCC 33406]
 gi|110282729|gb|ABG60915.1| ATP-dependent DNA helicase [Cytophaga hutchinsonii ATCC 33406]
          Length = 696

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 243/667 (36%), Positives = 371/667 (55%), Gaps = 44/667 (6%)

Query: 41  FIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           F DLL+Y+P    DR     I +I E+   + + G I+  SS  +  ++     + D TG
Sbjct: 32  FEDLLYYYPFRHEDRSKIYAIKDIHEDLPYIQVRGRITGISSQGVGPKKRLIAYVQDDTG 91

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
            + L++F     + KN+        V GK      ++ +VHP    + S+D     ++ V
Sbjct: 92  ILELVWFQGGAWIEKNIL-PNTIYVVFGKPNLYGRKLNVVHPEMEVY-SEDKTEKGLQPV 149

Query: 160 YSLPTGLSV---------DLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNII 209
           Y++   L            L +K++ E  S+LP +LP  I    + +    S A+A   I
Sbjct: 150 YNVTEKLKARGMDSKAISKLTEKLVKEIASKLPEILPAAI----IDEYKLISRAQAMEWI 205

Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI---- 265
           H P  A   E    A+ RL ++EL   QI LL  +K ++K     I+  G +   I    
Sbjct: 206 HLPPNAASVE---KAKARLKFEELFLIQIKLL-HQKTYRK-----IHYRGFVFNHIPTLN 256

Query: 266 ---LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
                ++PF  T +Q+  +K+I +D+    +M R+LQGDVGSGKT+V  + M  A++ G 
Sbjct: 257 VFYKEHLPFDLTDAQKRVVKEIYKDVCSGKQMNRLLQGDVGSGKTIVGFLCMLMAIDNGY 316

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA ++AP  ILA QHYE +K+      + V  +TG+  +  R      +  G  +I+IGT
Sbjct: 317 QACLIAPTEILAAQHYEGLKELAAKVGLTVAKLTGSSKKKERDVIHRDLLDGSLNILIGT 376

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSL 440
           HA+ +D +Q+  L + I+DEQHRFGV QR KL +K T   PHVL+MTATPIPRTL +T  
Sbjct: 377 HAILEDIVQFKNLGICIIDEQHRFGVAQRAKLWKKNTELPPHVLVMTATPIPRTLAMTLY 436

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDE----VIERLKVVLSEGKKAYWICPQIEEKK 496
           GD+DIS I + PAGRKPI T     ++ D+    V   ++  + EG++ Y + P IEE +
Sbjct: 437 GDLDISVIDQMPAGRKPISTS----HKFDKDRLLVFGFIRKQILEGRQIYIVYPLIEENE 492

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           + + + +++ F S++  F    + I+HGRM   DK+  M  F  G  K+++ATTVIEVG+
Sbjct: 493 KLDLKDLMDGFESINRAFPEFPVGILHGRMKPADKDFEMQRFVKGETKIMVATTVIEVGV 552

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +V +AS+++IENAE FGL+QLHQLRGRVGRG + S C+L+    LS N+ TR+  +  T 
Sbjct: 553 NVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCVLMTSHKLSANTKTRIETMVRTT 612

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           +GF IA+ DLK R  G++ G +QSG+    IA        L+++R+ A  +L  DP+L  
Sbjct: 613 NGFEIADVDLKLRGPGDLAGTQQSGVLDLRIADLAQDSQTLQLSRQSAMDLLDSDPELLK 672

Query: 676 VRGQSIR 682
              + +R
Sbjct: 673 PENRMLR 679


>gi|325268173|ref|ZP_08134806.1| DNA helicase RecG [Prevotella multiformis DSM 16608]
 gi|324989315|gb|EGC21265.1| DNA helicase RecG [Prevotella multiformis DSM 16608]
          Length = 698

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 240/674 (35%), Positives = 376/674 (55%), Gaps = 30/674 (4%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74
            +GVG +    LS+ +         + DLL Y P  ++DR     ISE+S +   V I G
Sbjct: 11  LQGVGPRKKEILSRELGIRT-----YRDLLEYFPYKYVDRTKVYLISELSPDMPFVQIKG 65

Query: 75  YISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
            I +    +  KRR   I    DG G I  L ++  T+ +   +   R+  V GK     
Sbjct: 66  RIIRFEETETGKRRKRVIAHFTDGHG-ICDLVWFNGTKYVYQNYQLNREYVVFGKPGVFN 124

Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAVYSLP--------TGLSVDLFKKIIVEALSR--LP 183
            RI   HP         +N   ++  Y           T  +V+   K ++  LS     
Sbjct: 125 GRIQFSHPDIDDAAQLQLNDMGMQPFYITTEKMKKAGITSRAVEKLTKTLIGKLSEPLEE 184

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            LP +I   L       S   A   IH PR   D   T  AR RL ++EL   Q+ +L  
Sbjct: 185 TLPPFITSHL----HLISRDAALRKIHYPRSVDD---TQRARVRLKFEELFYVQLNILRY 237

Query: 244 RKQFKKEI-GIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
               +++  G   N +  +       N+PF  T +Q+  + +I  DM+   +M R+LQGD
Sbjct: 238 ASDHRRKYRGYIFNRIGAQFNWFYTHNLPFELTGAQKRVMHEIRADMAGGRQMNRLLQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVAL++M  A++ G QA +MAP  ILA+QH + ++ + +   + +E++TG +  
Sbjct: 298 VGSGKTLVALMSMLIAIDNGYQACMMAPTEILAEQHLQTLRNFLKGMNLRIELLTGIIKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TA 420
             RR+ L+ +  G  HI++GTHAL +D +Q+++L + +VDEQHRFGV QR +L  K+   
Sbjct: 358 KRRREVLDGLMDGSIHIVVGTHALLEDKVQFHRLGMAVVDEQHRFGVAQRARLWGKSENP 417

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    +++  +   ++  + 
Sbjct: 418 PHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTLHKYDDQMPSLYNGIRQQIH 477

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
            G++ Y + P I+E +  + +++ + F +L + F    ++ +HG+M D +KE+ M  F +
Sbjct: 478 LGRQVYIVYPLIKESERMDLKNLEDGFAALCDIFPEFRLSKVHGKMKDKEKEAEMQKFVS 537

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+    
Sbjct: 538 GQTQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVTSHR 597

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEI 658
           L+K +  R+ ++  T DGF IAE DLK R  G++ G +QSG+   L IA       ++++
Sbjct: 598 LTKETSRRIDIMCETNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQIVQM 657

Query: 659 ARKDAKHILTQDPD 672
           AR++A+ I+  DPD
Sbjct: 658 AREEAQKIIDDDPD 671


>gi|239636294|ref|ZP_04677296.1| ATP-dependent DNA helicase RecG [Staphylococcus warneri L37603]
 gi|239597649|gb|EEQ80144.1| ATP-dependent DNA helicase RecG [Staphylococcus warneri L37603]
          Length = 682

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/661 (33%), Positives = 378/661 (57%), Gaps = 22/661 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+  +G+G K    L ++    N N     DL+ Y P+ + D      ++E  ++  VT
Sbjct: 12  PLNQIKGIGPKRLAVLQEL----NINTVE--DLILYLPTRYEDNTV-IDLNEAEDQSTVT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITVTGKIK 130
           + G +    +     R   K+ ++    +I +   F+ +  + K +   G  +TV GK  
Sbjct: 65  VQGEVYSSPTVAFFGRNKSKLTVHIMVNQIAVKCVFFNQPYLKKKIELHG-TVTVKGKWN 123

Query: 131 KLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
           + K  I   + + +F N Q ++N   +E VY +  G+     +  I ++L+ + V+ EW+
Sbjct: 124 RSKQEI---NGNRMFFNQQENLNDTQLEPVYRIKEGIKQKQLRDHIRQSLNDV-VIHEWL 179

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFK 248
             +L  K    ++    N +H+P+  +D      AR   A+ EL   ++ +  L R +  
Sbjct: 180 SDELRNKYKLETLEFTLNHLHHPQGKQDL---LRARRTYAFTELFMFELRMQWLNRLEKA 236

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +  I I+ + +  +  + ++PF  T +Q++++ +I +D+    RM R+LQGDVGSGKT+
Sbjct: 237 SDDAIEIDYDIQKVKSFIDSLPFELTDAQKTSVNEIFRDLKAPIRMHRLLQGDVGSGKTV 296

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA I M A   AG Q+ +M P  ILA+QH E + +   +T + V ++TG++    RR  L
Sbjct: 297 VAAICMYALKTAGYQSALMVPTEILAEQHAESLIQLFGDT-MNVALLTGSVKGKKRRILL 355

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E++ +G    +IGTHAL QD + +  + LVI DEQHRFGV QR KL +K    +VL MTA
Sbjct: 356 EQLENGTIDCLIGTHALIQDDVAFDNVGLVITDEQHRFGVNQRQKLREKGAMTNVLFMTA 415

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL ++  G++D+S I + P GRK I T      + ++V+ ++   L +G++AY I
Sbjct: 416 TPIPRTLAISVFGEMDVSSIKQLPKGRKTIMTSWAKHEQYEQVLTQMTSELKKGRQAYVI 475

Query: 489 CPQIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IE  +   + ++VVE F SL +++  + + ++HG++S+ +K+ VM  F      +L+
Sbjct: 476 CPLIESSEHLEDVQNVVELFESLQQYYGENKVGLLHGKLSNEEKDEVMHRFSEHEIDILV 535

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    
Sbjct: 536 STTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIE 594

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R++++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  +
Sbjct: 595 RMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANIVEDYRMLEVARDEAGEL 654

Query: 667 L 667
           +
Sbjct: 655 I 655


>gi|291531081|emb|CBK96666.1| ATP-dependent DNA helicase RecG [Eubacterium siraeum 70/3]
          Length = 677

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 245/672 (36%), Positives = 369/672 (54%), Gaps = 35/672 (5%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE-ISEERI 69
           +P+   +GVG+K +  L K+        T  + L  ++P  +ID +    IS+ +++   
Sbjct: 10  SPVCYIKGVGEKRAKLLEKL------GITTALQLAEHYPRGYIDFNETTAISDLVNDGEN 63

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF---YRKTEM-LKNVFFEGRKITV 125
             +   +++       +   +K+L++DGTG++ + FF   Y  T + L N +        
Sbjct: 64  HVVKAIVTKKFPAYYGRINIFKVLVSDGTGDMLITFFNSDYSFTRLKLDNEY------CF 117

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            GK+     R  M  P  +F +SQD N   +   YSL TG+S  +    I   L R    
Sbjct: 118 YGKMAGDFLRKEMNSP--VFIDSQDPN--KLMPRYSLTTGISQGIMSNCIKNVL-RDFTF 172

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PE +   L++K S  S   A   IH P   + ++    A+ RL ++EL   Q+ L  M+ 
Sbjct: 173 PEHLTDTLMKKYSLISYDNALRWIHFPENKEQYD---KAKYRLTFEELFLLQLGLKSMKN 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + K+  G P+  E K   +   ++PF+ T +Q  AI +   DM +   M R+LQGDVGSG
Sbjct: 230 RKKRLAGAPM--ENKSIDEYYSSLPFTLTGAQIRAISECCDDMQKSVPMNRLLQGDVGSG 287

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT VA  A   A   G Q+ +MAP  ILA+QHY+ + K+     + + ++TG+   A ++
Sbjct: 288 KTAVAAGAAYFAYLNGYQSTLMAPTEILAKQHYDTLYKFLAPLGVTIALLTGSQTPAQKK 347

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           +  + IA GQ  + +GT AL Q S ++  L LVI DEQHRFGV QR  L  K   PH+L+
Sbjct: 348 QIRQLIADGQIDVAVGTQALIQKSTRFSSLGLVITDEQHRFGVGQRAALGSKGNEPHILV 407

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPRTL +   GD+DIS + E P GR PI+T  +  +  + + + +   ++ G +A
Sbjct: 408 MSATPIPRTLGMIIYGDLDISILDEMPKGRLPIRTYAVDTSYRERLYKFILKYVNNGFQA 467

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE   S   +  E  NSL     +++   ++HG+M   DK++VM  FK+   K
Sbjct: 468 YIVCPLIEEGI-SEKAAATEYINSLQNTCLANVPTGLLHGKMKQADKDAVMQDFKDNKLK 526

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT+VIEVG+DV +A +++IENAE FGL+QLHQLRGRVGRG E S CIL+     +K+
Sbjct: 527 VLVATSVIEVGVDVPNAVVMVIENAEQFGLSQLHQLRGRVGRGTEQSHCILVTD---NKS 583

Query: 604 SYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            YT  R+  +  T DGF IA EDLK R  G+  G KQ G+P+  IA       +L++  +
Sbjct: 584 DYTKQRMDTMVKTSDGFEIANEDLKLRGPGDFFGSKQHGLPQLKIADIYADLDILKMTGE 643

Query: 662 DAKHILTQDPDL 673
            A  IL  D  L
Sbjct: 644 AADDILRDDSRL 655


>gi|160943140|ref|ZP_02090377.1| hypothetical protein FAEPRAM212_00625 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445609|gb|EDP22612.1| hypothetical protein FAEPRAM212_00625 [Faecalibacterium prausnitzii
           M21/2]
          Length = 686

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 227/645 (35%), Positives = 347/645 (53%), Gaps = 30/645 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID--RHYRPKISEISEERI 69
           P+   +GVG K +    K+            DLL ++P  +ID  + Y    +    E +
Sbjct: 14  PVRYLKGVGPKTAERFEKL------GIVTLADLLCHYPRRYIDFSKPYSIAEAPADTECV 67

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF-----YRKTEMLKNVFFEGRKIT 124
           V    +           RR  +I   D    + + +F      +K ++ +  +F+G    
Sbjct: 68  VKAEVFAKPGGRILPGGRRMERITAGDDVASLEITWFNNPYATQKLQLGQEYYFQG---I 124

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           VTG + + +    MV+P      ++ +     EAVY    GL+  +  + I + L    +
Sbjct: 125 VTGGMLRRQ----MVNPQ--VRTAEQIQAAPFEAVYPQTEGLTSSVISRCIRQLLPHAEL 178

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +  ++LQK      AEA   IH P      E  + AR RL Y+ELL  Q+ +  MR
Sbjct: 179 LPDPLPPEMLQKYRLLPKAEAVRAIHCPATE---EQAAAARRRLIYEELLVLQLGIGRMR 235

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            +     G P+           +++PFSPT +Q  A+++IL DM+ +  M R+LQGDVGS
Sbjct: 236 NRGAAATGAPMRRADP--SPFWQSLPFSPTGAQRRAVEEILTDMASETAMNRLLQGDVGS 293

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA  A+ A + AG QA ++AP  ILA QH E + +      + V ++TG M  A R
Sbjct: 294 GKTLVAAAAIWACIRAGYQAALLAPTEILAAQHAEGLNRLLAPFGMRVALLTGGMKAAAR 353

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R  L  I   +A +++GTHAL  + +++ +L L ++DEQHRFGV+QR  L +KA  PH+L
Sbjct: 354 RTTLAAIRKDEADLVVGTHALMSEGVEFARLGLAVIDEQHRFGVRQRGALAEKAANPHLL 413

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPRTL L   GD+DIS + E P GR P+KT  I   R  ++   L   + +G++
Sbjct: 414 VMSATPIPRTLGLLIYGDLDISVLDELPPGRTPVKTRCITGKRRQDLYRFLDSEIDKGRQ 473

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP IE+  +    +V   +  + +       + ++HG++   +K +VM+ FK G  
Sbjct: 474 VYLVCPAIEDVPDGGLNAVKTYYEDIAKTLLPDRRVGLMHGKLKPKEKAAVMEDFKAGRL 533

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
             L++TTVIEVG+DV +AS+++IENAE +GL+ LHQLRGRVGRG   S C L+     S+
Sbjct: 534 DALVSTTVIEVGVDVPNASVMVIENAERYGLSALHQLRGRVGRGAAESWCFLVSD-NTSE 592

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
               RL  L +T DGF +A+ DL+ R  G+  G +Q G+P   IA
Sbjct: 593 AVQKRLKFLCSTTDGFAVAQYDLETRGPGDFFGSRQHGLPTLQIA 637


>gi|323486979|ref|ZP_08092293.1| hypothetical protein HMPREF9474_04044 [Clostridium symbiosum
           WAL-14163]
 gi|323692024|ref|ZP_08106272.1| ATP-dependent DNA helicase RecG [Clostridium symbiosum WAL-14673]
 gi|323399691|gb|EGA92075.1| hypothetical protein HMPREF9474_04044 [Clostridium symbiosum
           WAL-14163]
 gi|323503947|gb|EGB19761.1| ATP-dependent DNA helicase RecG [Clostridium symbiosum WAL-14673]
          Length = 696

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/678 (32%), Positives = 378/678 (55%), Gaps = 21/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEERIV 70
           P+++ +G+G K +   +++            DLL Y+P ++ D    P+ ISE+  E + 
Sbjct: 17  PVTSLKGIGDKTAGLFARL------GVQTVEDLLHYYPRAY-DTFREPQPISELLPETMA 69

Query: 71  TITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            ++G +++ +   +    +   + + D +G +TL ++      L+     G      G++
Sbjct: 70  AVSGMLTKTADVVKFGHLQVTTVTVRDISGILTLTWY--NMPYLRGTLKAGEHFIFRGRL 127

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            + + R+ M  P      +       ++ VY    GL      + + EAL       +++
Sbjct: 128 VRKRGRLTMEQPEIYRPEAYARLVHSMQPVYGQTKGLGNKTIARTVAEALEVKETEKDYL 187

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQFK 248
              L +K        A   IH P+   +  ++   R+RL +DE     +++ L++ K+  
Sbjct: 188 PAALREKYQLAEYNFALEHIHFPKDETELLFS---RKRLVFDEFFMFLLSVRLLKDKKVD 244

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K    P  ++ +I + + + +P+S T +Q+  + ++ +D+S  + M R++QGDVGSGKT+
Sbjct: 245 KASPCPFKIDNQI-RGLEQRLPYSLTNAQKKVLDEVYRDLSGGHIMNRLIQGDVGSGKTI 303

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE--IITGNMPQAHRRK 366
           +A++A+  A   G Q  +M P  +LA+QH+E + +      +     ++TG+M    +R 
Sbjct: 304 IAVLALLQAAGNGYQGALMVPTEVLARQHFESMNELFTGLGLSARPVLLTGSMTAKEKRL 363

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
           A ERIA+ +A II+GTHAL Q+ + Y KL LVI DEQHRFGV QR  L  K   PH+L+M
Sbjct: 364 AYERIANHEADIIVGTHALIQEKVIYDKLALVITDEQHRFGVGQREMLGNKGMEPHILVM 423

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL +   GD+DIS I E PA R+PIK  ++  +  +     ++  + EG++AY
Sbjct: 424 SATPIPRTLAIIIYGDLDISVIDELPANRQPIKNCVVGRDYRENAYRFIEKEVKEGRQAY 483

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKL 544
            ICP +E  +     +VV+   +L EH +  I +  +HG+M   +K  +M+ F     ++
Sbjct: 484 VICPMVEASEMLEAENVVDYTKTLREHLSGDIRVEYLHGKMKAKEKNRLMELFAANEIQV 543

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVGI+V +A++++IEN+E FGLAQLHQLRGRVGRG+  S CI++ +    +++
Sbjct: 544 LVSTTVIEVGINVPNATVMMIENSERFGLAQLHQLRGRVGRGKAQSYCIMV-NCSGEEDA 602

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL +L  + DGF IA EDLK R  G++ G++QSG  +F +A       +L+   ++ K
Sbjct: 603 QKRLEILNKSNDGFFIASEDLKLRGPGDLFGVRQSGDLEFRLADIFTDADILKTVSEEVK 662

Query: 665 HILTQDPDLTSVRGQSIR 682
            ++ QDP L+S   + ++
Sbjct: 663 MLMDQDPLLSSGENRELK 680


>gi|304316960|ref|YP_003852105.1| ATP-dependent DNA helicase RecG [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778462|gb|ADL69021.1| ATP-dependent DNA helicase RecG [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 682

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 238/658 (36%), Positives = 361/658 (54%), Gaps = 17/658 (2%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           +GVG K +L L KI       ET   D L Y+P  + +R     I  +      T   YI
Sbjct: 11  KGVGPKRALLLKKI-----GIET-VKDALEYYPKEYENREKIIPIDMLKIGEKQTFKAYI 64

Query: 77  SQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           +  +  +++++    KI + DG+G + L+++      +K  F  G +  + GK+     +
Sbjct: 65  AGKAREYKVKRLTITKIPVKDGSGAVELVWY--NQPYIKGNFKLGEEYIINGKVFYKYGQ 122

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLL 194
           I + +P     +S ++N   I  +Y L  GLS  + + II   L   L  + E  +++ L
Sbjct: 123 IYVENPVMDRSDSLNINAGRIVPIYKLTEGLSQKVIRSIIFNLLKEYLNDIEEIFDENFL 182

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
           ++ +   I  A   IH P  +K  E +   + RL + E    Q+ L L++ ++  +    
Sbjct: 183 KEYNLLDIKSAIKNIHFPESSKMLERS---KYRLVFQEFFILQLGLTLIKNRYNTDKA-G 238

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           I       +     + F  T++QE A+ +IL DM     M R+LQGDVGSGKT++A  AM
Sbjct: 239 IKFRRVDLKDFFSKLKFHLTQAQERALNEILDDMYSGKVMNRLLQGDVGSGKTVIAAAAM 298

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             AV+ G QA IMAP  ILA+QHY  +K+      I +E++TG++    +   +E I +G
Sbjct: 299 YVAVKNGYQASIMAPTEILAKQHYFTLKELYDELDIKIELLTGSIGTKKKNIIIEEIKNG 358

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           +  I++GTH+L ++++Q+  L L I DEQHRFGV+QR    +K     VL+MTATPIPRT
Sbjct: 359 EIDILVGTHSLIEENVQFKNLGLAITDEQHRFGVRQRAVFKEKGEQTDVLVMTATPIPRT 418

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L L   GD+DIS I E P GRK I+T  I     D   + +   + +G++AY +CP IE+
Sbjct: 419 LALMLYGDLDISVIDELPPGRKKIETYAISATLRDRAYKFVINEVKKGRQAYIVCPLIED 478

Query: 495 KKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               N +S    +  +++       + ++HG MS  DK  VM+ F NG   +L++TTVIE
Sbjct: 479 SNLINAKSAEVVYEEIYKGVFKEFRVGLVHGGMSSNDKNKVMNEFVNGKIDILVSTTVIE 538

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG++V +AS+I+IENAE FGLAQLHQLRGRVGR    S CIL+ +   S     RL V+ 
Sbjct: 539 VGVNVPNASVIVIENAERFGLAQLHQLRGRVGRSSNQSYCILIAY-SYSDVVKKRLKVMT 597

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            T DGF IAE+DL+ R  GE  G+KQ G+P+  +A       +L++A+K  +  L  D
Sbjct: 598 ETNDGFKIAEKDLEIRGPGEFFGVKQHGLPELKLANIFEDIEILKLAQKAVEKFLNND 655


>gi|288818616|ref|YP_003432964.1| ATP-dependent DNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|288788016|dbj|BAI69763.1| ATP-dependent DNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|308752207|gb|ADO45690.1| ATP-dependent DNA helicase RecG [Hydrogenobacter thermophilus TK-6]
          Length = 784

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 236/666 (35%), Positives = 372/666 (55%), Gaps = 32/666 (4%)

Query: 45  LFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLL 104
           L+Y P  + DR     I      + V +   + + + +   ++ P  +   DGTG + L 
Sbjct: 121 LWYLPVRYEDRRLNNSIKTTKPGQKVALKLRVLE-TGYDPSEKYPAYVKCEDGTGILYLR 179

Query: 105 FFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT 164
           F Y+  + L   F +G  I   G++K+ K    MVHP   F   Q+  F  I   Y + +
Sbjct: 180 FRYKDQKPL-YAFKKGSYIVAYGRLKEFKGEKYMVHPEVSF---QEEEFGKILPFYYIRS 235

Query: 165 -----GLSVDLFKKIIVEALSRL----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                 +S     + I +A+ +L      +PE++ ++LLQK  FP+IAE+  + H+P+  
Sbjct: 236 KGEIKAISSKTRHRKIRQAIGKLLEYVKYMPEYLPEELLQKYQFPNIAESLYMAHSPQDG 295

Query: 216 KDFEWTS---PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
            +    S   P + RL Y+EL   Q+ L + ++Q      + ++   K  ++++  +PF 
Sbjct: 296 DEDALNSRATPFQRRLIYEELFLFQLLLQIRKRQISNLEAVKLSHPEKHTEELISTLPFK 355

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T++Q   +++I +D+     M R+LQGDVGSGKT+VA+    A    G Q  IMAP  I
Sbjct: 356 LTEAQRRVLEEIAKDLKTGKPMNRLLQGDVGSGKTVVAMAVSYAFAREGYQCAIMAPTEI 415

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LAQQHYE  K++ +   + V ++T ++  + R      I+ G   ++IGTHAL QD +++
Sbjct: 416 LAQQHYENFKRFLEPLGVKVGLLTSSVKGSARNSVYRHISAGNISVLIGTHALLQDRLEF 475

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             L  V++DEQHRFGV QR ++  K     PH L+M+ATPIPRTL L+  GD+DIS I +
Sbjct: 476 ENLAFVVIDEQHRFGVMQRREMLSKGKNLFPHCLVMSATPIPRTLALSLYGDLDISIIDQ 535

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P GRKP+ T +I  +++++ I  ++  L +G K Y + P IE  ++   +S  E +   
Sbjct: 536 MPEGRKPVITKLIFESQMEKCISFIRSELEKGGKVYVVYPLIEGSEKVELKSATESYMLW 595

Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
              F    + ++HGR+ D +KE+VM  FK  +  +L++TTVIEVG+DV  A++++IE+A 
Sbjct: 596 KSLFPDRKVLLMHGRLKDQEKEAVMREFKE-SADILVSTTVIEVGVDVPSATVMVIESAH 654

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS----YTRLSVLKNTEDGFLIAEEDL 625
            FGL+Q+HQLRGRVGR E    C L+  P   KN+      RL VL  T DGF IAEEDL
Sbjct: 655 MFGLSQIHQLRGRVGRSERQGYCFLVV-PDSLKNTDAEAIKRLRVLVQTSDGFKIAEEDL 713

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDS--LLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           K R  GE+LG  QSG   F +A     +   LLE+A++DAK ++ +   + +++    ++
Sbjct: 714 KMRGPGELLGASQSGYFGFTVASLARAEDRYLLELAKEDAKAMIEKLNHMENLK----KV 769

Query: 684 LLYLYQ 689
           L Y Y+
Sbjct: 770 LAYRYK 775


>gi|229174521|ref|ZP_04302053.1| ATP-dependent DNA helicase recG [Bacillus cereus MM3]
 gi|228609081|gb|EEK66371.1| ATP-dependent DNA helicase recG [Bacillus cereus MM3]
          Length = 682

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 228/663 (34%), Positives = 374/663 (56%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L+++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLNEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLNETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+       V    +E VYS+   L+V   ++ I +A      S + V
Sbjct: 119 DQHRQTIAVSELHF----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQAFKEYGESIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+     LL +       EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPD----GLLSRYKLLPRYEALRSLHFPAGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G    +     Q+ +  +PF  T +Q   + +I++DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSAELQEFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++    
Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMNVELLTSSVKGVR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|319778250|ref|YP_004129163.1| ATP-dependent DNA helicase RecG [Taylorella equigenitalis MCE9]
 gi|317108274|gb|ADU91020.1| ATP-dependent DNA helicase RecG [Taylorella equigenitalis MCE9]
          Length = 680

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/598 (38%), Positives = 342/598 (57%), Gaps = 26/598 (4%)

Query: 94  LNDGTGEITLLF--FYRKTEMLKNVFFEGRKITVTGKIK-KLKNRIIMVHPHYIFHNSQD 150
           L+D +G ++L +  FY     L      G  + V G +K   K    ++HP       + 
Sbjct: 73  LSDDSGTLSLRWIHFYPN---LVGYLKSGPVVRVKGLVKGSPKWGCTIIHPEI-----KK 124

Query: 151 VNFPL---IEAVYSLPTGLSVDLFKKII---VEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
           +  PL   +  +YS   GL+ D+ +K I   +E         + +   +L K S P+  E
Sbjct: 125 ITDPLPANLTPIYSTTAGLTQDVLRKKIKLNLELAKTNGDFRDTLPLQILNKYSLPAFEE 184

Query: 205 AFNIIHNPR--KAKDFE-WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK- 260
           A   +HNP+  +AK  E  T PA  RL +DELLA Q+ L L R + ++   IP+ +  + 
Sbjct: 185 AIFTLHNPKLSEAKSIENKTHPAWHRLVFDELLAQQLTLQLARDKREQLKAIPLELNDRS 244

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           + + ++       T +Q+  I +I +D+ +   M R+LQGDVGSGKT+VA +A +  +  
Sbjct: 245 LFEGVINEFSLELTGAQKRVISEITEDLKKPKPMNRLLQGDVGSGKTIVAALAASLVISN 304

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q  +MAP  ILA+QHY  + K+     I +  + G++    +    E I    A+ +I
Sbjct: 305 GYQVALMAPTEILAEQHYLKLSKWFNPLGIEIVRLYGSLSAKEKNSVYEAILKSTANFVI 364

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLV 436
           GT AL Q+ +++  L L+IVDEQHRFGV QRL L +K       PH L M+ATPIPRTL 
Sbjct: 365 GTQALIQEKVEFANLGLLIVDEQHRFGVIQRLTLNKKGELGEYIPHQLSMSATPIPRTLA 424

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           ++ L DID+S I E P GR PI T +I   R D+V   ++  + +G +AYW+CP +EE +
Sbjct: 425 MSYLADIDVSTIDELPPGRTPILTKLIKKERRDQVAFHIRDEVKKGLQAYWVCPLVEESE 484

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
               +S V+ +N +        + ++HG++   +K  +M  FK+  C++L+ATTVIEVG+
Sbjct: 485 ALQLQSAVDTYNWIRNLLPDIKVGLVHGQLKSSEKNDIMQKFKDNECQILVATTVIEVGV 544

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +ASI++IE+AE FGLAQLHQLRGRVGRG+  S+CIL+Y  PL+     RL  +  T 
Sbjct: 545 DVPNASIMVIEHAERFGLAQLHQLRGRVGRGQNSSTCILIYQEPLTVVGKERLKAMYETT 604

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           DGF IA  DL+ R  GE+LG KQSG+     AQ ++  + LE  R +AK+++   PDL
Sbjct: 605 DGFEIARRDLEIRGPGELLGQKQSGVAMLRFAQIQVDTATLEFVRDEAKNLIRNYPDL 662


>gi|325283038|ref|YP_004255579.1| ATP-dependent DNA helicase RecG [Deinococcus proteolyticus MRP]
 gi|324314847|gb|ADY25962.1| ATP-dependent DNA helicase RecG [Deinococcus proteolyticus MRP]
          Length = 786

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 235/665 (35%), Positives = 366/665 (55%), Gaps = 26/665 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99
           DLL Y+P    DR   P +  + E + VT+ G +   S F+   +    IL   L  G G
Sbjct: 137 DLLHYYPHRHEDRRALPSLDHVEEGQKVTVQGVVV--SRFKRTPKPRMTILEATLETGGG 194

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL--IE 157
            +   +F +    ++    EG ++ VTG++K+      +   H    +S + +     I 
Sbjct: 195 RVKATWFNQP--WMERQLREGARVIVTGRVKRFGRTAQLAAEHLESLDSAEGSLSTGRIV 252

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            VY    G+S +  ++    AL   P L +++     ++     +A+A   IH P    D
Sbjct: 253 GVYDAKEGISQEFLRRAAWRALQAAP-LDDYLPAHWRREYGLTPLADALQGIHFP---AD 308

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRK----QFKKEIGIPINVEGKIAQKILRNIPFSP 273
               S A  RL +DE L  ++ +LL  +    Q K+    P +++     +   N+PF+ 
Sbjct: 309 EGQLSRAMARLRFDEYLFLELRMLLQGEEAVLQGKRFEAHPEDID-----RFEGNLPFNF 363

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q   + +I+++M    +M R++QGDVGSGKT VA  A+  AV  G Q  +MAP  IL
Sbjct: 364 TGAQRRVLGEIVEEMRSDRQMARLVQGDVGSGKTAVAACALYLAVRDGYQGALMAPTEIL 423

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QHY  + KY +   + V ++ G M    +     RIA G+  I++GT AL Q+++Q+ 
Sbjct: 424 ARQHYANLCKYLEPLDVRVGLLIGAMTPKAKLDMQGRIALGEVDIVVGTQALIQENVQWD 483

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L ++DE+HRFGV QR KL   A+ P VL+M+ATPIPR+L LT+ GD+++S I E P 
Sbjct: 484 NLGLAVIDEEHRFGVMQRRKLL--ASRPDVLVMSATPIPRSLALTAYGDLELSVIDELPP 541

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GR PI+T +I      +    +   + +G++AY +   IEE +     +  E   +L E 
Sbjct: 542 GRTPIETKLIQDGYRAQAYGFVMGQIRQGRQAYVVTALIEENENLELLAATELAENLAEM 601

Query: 514 FTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + I ++HG+M+  +K+ +M SF+     LL++TTVIEVG+DV +A++++IENAE FG
Sbjct: 602 LPEARIGLLHGKMTAAEKDDIMASFRRHDFDLLVSTTVIEVGVDVPNATVMVIENAERFG 661

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+QLHQLRGRVGRG   S C+L+    +SK +  RL +++ + DGF+IAE DLK R  GE
Sbjct: 662 LSQLHQLRGRVGRGSLQSYCVLIAG-EMSKKTEQRLRIIEGSTDGFVIAEADLKLRGPGE 720

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           I G +QSG+P   +        ++E AR+ AKHIL+ DP L   R Q +R  L     + 
Sbjct: 721 IRGTRQSGIPDLRLGDLANDAEVIEQARQLAKHILSNDPRLEHPRLQYLRSELQNRSQSV 780

Query: 693 AFQFI 697
           AF+ +
Sbjct: 781 AFREV 785


>gi|313205993|ref|YP_004045170.1| ATP-dependent DNA helicase recg [Riemerella anatipestifer DSM
           15868]
 gi|312445309|gb|ADQ81664.1| ATP-dependent DNA helicase RecG [Riemerella anatipestifer DSM
           15868]
 gi|315022306|gb|EFT35334.1| ATP-dependent DNA helicase RecG [Riemerella anatipestifer RA-YM]
 gi|325336566|gb|ADZ12840.1| RecG-like helicase [Riemerella anatipestifer RA-GD]
          Length = 696

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 235/691 (34%), Positives = 388/691 (56%), Gaps = 30/691 (4%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV--TIT 73
            +GVG + +  +  ++           DLL ++P  ++D+    +++++ +   V   + 
Sbjct: 10  LKGVGPERAKLIKNLLGISTVE-----DLLTFYPIRYLDKSRLYRVADLQKNADVEMQLK 64

Query: 74  GYISQHSSF---QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           G I +       + QKR   K    D TG I L++F R T+ +       +++ + GK+ 
Sbjct: 65  GKIRELQEVVYGKGQKRLSAKFY--DETGVIELVWF-RYTKWMVEQMPINKEVFIFGKVN 121

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS-----LPTGLSVDLFKKIIVEALSRLPV- 184
                  M HP       + ++  L+  +YS     +  G++   F+ II E + +    
Sbjct: 122 WFNGVFSMPHPEIELDEKKALSETLL-PIYSGSEKLIKRGVNNKFFQTIIREVIKQASFF 180

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E +  ++L         EA+  IH P   ++  W + A +RL ++E    Q+   L +
Sbjct: 181 LEENLPSNILSSLKLIGRREAYQNIHFP---QNISWINEANKRLKFEEAFFFQLGYGL-K 236

Query: 245 KQFKK--EIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           KQ++K   +GIP  + G       +N +PF  T +Q+  +K+I  DM +  +M R+LQGD
Sbjct: 237 KQYQKVSNVGIPFPLVGDYFNNFYQNKLPFELTNAQKRVLKEIRNDMKKPIQMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VAL++M  A++ G QA +MAP  ILAQQHY  I +  + T I + ++TG+  +
Sbjct: 297 VGSGKTMVALLSMLLALDNGTQACLMAPTEILAQQHYNSIVQLLEGTGIEIRLLTGSTKK 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATA 420
           + R+   E +  G+  I++GTHA+ +D++++  L L I+DEQHRFGV QR KL  K    
Sbjct: 357 SERKDIHEGLESGRLSILVGTHAILEDAVKFKNLGLGIIDEQHRFGVAQRAKLWSKNKIP 416

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH+L+MTATPIPRTL ++   D+D+S I E P GRKPI T          V +  K  + 
Sbjct: 417 PHILIMTATPIPRTLAMSFYSDLDVSVIDELPTGRKPIITAHRREKDRLSVYQFAKEEIQ 476

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           +G++ Y++ P IEE +  ++++++E F  + ++F    + ++HG+M   +K+  M+ F +
Sbjct: 477 KGRQIYFVYPLIEESETLDYKNLMEGFEIVLDYFKDYEVTMLHGKMKPHEKDEAMNYFAS 536

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S CIL+    
Sbjct: 537 GKAQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILMSSDK 596

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS     R+  +  T DGF I+E D++ R  G+ILG +QSG+  F         S++++A
Sbjct: 597 LSTEGRKRIKTMCETNDGFKISEVDMQLRGPGDILGTQQSGIVDFKKLDLTKDASVIKVA 656

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
           +K    ++  DP+LT      +R   Y+ QY
Sbjct: 657 QKIVTLLVQSDPNLTHPAHAQLRN-YYIKQY 686


>gi|328957308|ref|YP_004374694.1| ATP-dependent DNA helicase RecG [Carnobacterium sp. 17-4]
 gi|328673632|gb|AEB29678.1| ATP-dependent DNA helicase RecG [Carnobacterium sp. 17-4]
          Length = 682

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 232/648 (35%), Positives = 366/648 (56%), Gaps = 20/648 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL ++P  + D   +  + EI ++  VT+ G +      S F  +K R  +++++    
Sbjct: 33  DLLSHYPIRYEDIQEK-DLLEIEDQEKVTLKGNVVSEAVVSRFGPKKNRLSFRLIIEHAV 91

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             IT+ FF +    LK+    G +I V GK    +  +  +        S+  +F   E+
Sbjct: 92  --ITVTFFNQA--YLKSKIVTGEEIAVFGKWDAKRKSLTGMKILGSKSGSEQGDF---ES 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VYS    +      ++I EA       +PE I  +L  K    S  +A   +H P     
Sbjct: 145 VYSANKHIKQSTILQLITEAFKIYQEHIPEVIPAELRTKYRLISHHDAVYAMHFPASE-- 202

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKS 276
            E    AR  + ++E L  Q+ + ++RK+ K    G  +N      +  +  +PF  T +
Sbjct: 203 -EQKKQARREVVFEEFLLYQMRMQIVRKKQKAMGKGNILNYNVNDLRNFIETLPFELTTA 261

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+  + +I  D+ Q   M R+LQGDVGSGKT+VA IA+ AA   G Q+ +M P GILA+Q
Sbjct: 262 QKRVVNEICSDLRQPIHMHRLLQGDVGSGKTIVAAIALYAATNVGVQSALMVPTGILAEQ 321

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H E + +     ++ + ++TG+     RR  LE++A+G+  ++IGTHAL Q  + + +L 
Sbjct: 322 HMESLTELFDPLEVRIALLTGSTKTKERRIILEQLANGELDVLIGTHALIQQDVYFSRLG 381

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV QR  L  K     VL MTATPIPRTL +T+ G++D+S I E PAGR 
Sbjct: 382 LVITDEQHRFGVNQRKLLRDKGKDADVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRI 441

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PI+T  I     ++ +E ++  L +G +AY ICP IEE +  + ++  + +  L  ++  
Sbjct: 442 PIQTTWIKPKNFEKTLEFIESQLKKGSQAYVICPLIEESESIDVKNATDIYEKLTAYYGD 501

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              + ++HG+M   DKE++M++FK    ++L++TTVIEVG++V +A+ +II +A+ FGL+
Sbjct: 502 RFQVGLLHGKMKSADKENIMENFKEKKLQVLVSTTVIEVGVNVPNATTMIIYDADRFGLS 561

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG++ S CIL+ +P  ++N   R+ ++  T DGFL++E+DL+ R  G++ 
Sbjct: 562 QLHQLRGRVGRGDKESYCILVANPK-TENGMERMKIMTETTDGFLLSEKDLELRGPGDLF 620

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           G KQSG+P F I         LE AR++A  ++ Q   LT+   Q IR
Sbjct: 621 GNKQSGIPDFKIGDIVGDFGALEAARQEAVQLINQKDFLTNELYQPIR 668


>gi|187478413|ref|YP_786437.1| ATP-dependent DNA helicase RecG [Bordetella avium 197N]
 gi|115422999|emb|CAJ49529.1| ATP-dependent DNA helicase [Bordetella avium 197N]
          Length = 684

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 240/664 (36%), Positives = 361/664 (54%), Gaps = 37/664 (5%)

Query: 34  GNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT----GYISQ------HSSFQ 83
           G+  E R  +L    P  F+   + P   E  E RI+ I     G+ +Q       S   
Sbjct: 10  GSLIERRLRNLGLVEPEDFV--LHLPLRYE-DETRIIPIAEARPGFPAQVEGEILRSDVL 66

Query: 84  LQKRRPYKILLNDGTGEITL--LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
            + RR    ++ D +GE+ L  L FY   +   N    GR++   G ++       MVHP
Sbjct: 67  YRPRRQLTAVIADDSGELHLRWLNFYPSQQKQLN---SGRRLRARGDVRGGMFGREMVHP 123

Query: 142 HYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200
                ++ D   P  +  VY    GL+  + ++ + +AL+ L  L + + + + Q+    
Sbjct: 124 RM---SNADGALPTALTPVYPSTDGLTQPVLRRAVTQALAGL-ALDDTLPEAVRQRYGLL 179

Query: 201 SIAEAFNIIHNPRKA---KDF-EWTSPARERLAYDELLAGQIALLLMRKQFKKEIG---I 253
              EA  ++H P      +D  E T PA  R+ +DELLA Q++L   R     +      
Sbjct: 180 PFNEAVRLLHAPPPGIAERDLSERTHPAWRRIKFDELLAQQLSLAAARAARHDKRAPSMA 239

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P      +  ++   +PF+ T +Q+  + +I  D+++   M R+LQGDVGSGKT+VA +A
Sbjct: 240 PDTKPAGLTARLYAALPFTLTGAQQRVVAEIATDLARPYPMHRLLQGDVGSGKTVVAAVA 299

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
            A A+  G Q  +MAP  ILA+QH+  +  + +   + V  ++G++   +RRKA E I  
Sbjct: 300 AAQAIANGFQVALMAPTEILAEQHFRKLAAWLEPLGVSVAWLSGSLTLKNRRKAAEAIEA 359

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA------TAPHVLLMT 427
           G+  +++GT AL QD + + +L L IVDEQHRFGV QRL L++K         PH L M+
Sbjct: 360 GEVQLVVGTQALIQDHVNFPRLGLSIVDEQHRFGVGQRLALSRKGEEAEGRVVPHQLSMS 419

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T   D+D+S I E P GR P+ T ++   R DE+I  +      G++AYW
Sbjct: 420 ATPIPRTLAMTFFADLDVSVIDELPPGRTPVLTKLLSEGRRDELIAHIAQAARAGRQAYW 479

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +CP +EE +    ++ V+ + ++        + ++HGR+   +K +VM++F+ G   LL+
Sbjct: 480 VCPLVEESEALQLQTAVDTYETMRVELPDLRVGLVHGRLPQTEKAAVMEAFRAGDVDLLV 539

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRGE  S C+LLY  PLS+ +  
Sbjct: 540 ATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGEAESVCVLLYQTPLSQVARE 599

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL  +  T DGF IA  DL+ R  GE LG +QSGM     A  +    L E AR  A  +
Sbjct: 600 RLRAMFETSDGFEIARRDLELRGPGEFLGTRQSGMELLRFANIDQDIELAEAARDTAAWL 659

Query: 667 LTQD 670
              D
Sbjct: 660 RQHD 663


>gi|333029286|ref|ZP_08457347.1| ATP-dependent DNA helicase RecG [Bacteroides coprosuis DSM 18011]
 gi|332739883|gb|EGJ70365.1| ATP-dependent DNA helicase RecG [Bacteroides coprosuis DSM 18011]
          Length = 698

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 236/671 (35%), Positives = 377/671 (56%), Gaps = 29/671 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L++ +N  + +     DL++Y P  ++DR     ISE++     + + G I
Sbjct: 14  GVGPRRAEILNQELNIFSLH-----DLIYYFPYKYVDRSRVYTISELTGSMPYIQLKGQI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
              +     +++       DGTG I L++F R  + + +     +   + GK      ++
Sbjct: 69  LHFNVVGEGRKKRLVARFTDGTGFIDLVWF-RGVKYISSSLKLRQDYLIFGKPTVFNGQV 127

Query: 137 IMVHPHYIFHNSQDVNF------PLIEAVYSLPTG----LSVDLFKKIIVEALSRLPVLP 186
            + HP     N+ D+        P       +  G     S++   K +V+ L + P+ P
Sbjct: 128 NIAHPD--MENATDIQLSSLGLKPYYNTTEKMKRGSMNSQSIEKLMKSVVDLL-KYPI-P 183

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + ++QK     + EA  IIH P  A        A+ RL ++EL   Q+ +L   K+
Sbjct: 184 ETLPEHIIQKYKLMPLQEALKIIHFPGDALSLR---KAQYRLKFEELFYIQLNILSYSKE 240

Query: 247 FK-KEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            + K  G      G+       +N+PF  T +Q+  +K+I QD+    +M R+LQGDVGS
Sbjct: 241 RQLKYKGFTFPKIGEYFNNFFFKNLPFELTGAQKRVLKEIRQDVGTGVQMNRLLQGDVGS 300

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVAL++M  A++ G QA +MAP  ILA QHYE I ++     I VE++TG+  +  R
Sbjct: 301 GKTLVALMSMLMALDNGYQACMMAPTEILASQHYETILEFIHGLDIRVELLTGSTRKKDR 360

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHV 423
            + L  +  G+  IIIGTHAL +D++ +  L   ++DEQHRFGV QR KL  +    PH+
Sbjct: 361 ERILSGLISGEVQIIIGTHALLEDTVTFKALGFAVIDEQHRFGVAQRAKLWIKNDNPPHI 420

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    NR   + + +K  L+ G+
Sbjct: 421 LVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRKKSLYKMVKDQLAMGR 480

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y++ P IEE ++ + +++ + +  + + F    +  +HG+M   +K+  M+ F +G  
Sbjct: 481 QIYFVYPLIEESEKIDLKNLEQGYELITQEFPEYRVVKVHGKMKPAEKDEQMNLFASGQA 540

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S C+L+    LS+
Sbjct: 541 HIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCVLVTGYKLSE 600

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARK 661
            +  R+ ++  + DGF IAE DLK R  G++ G +QSG+   L +A       LL+  R 
Sbjct: 601 ITRKRIEIMVESNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKVADLAKDGQLLQFVRT 660

Query: 662 DAKHILTQDPD 672
            A+ I+ +D +
Sbjct: 661 VAQDIIDKDKN 671


>gi|326790886|ref|YP_004308707.1| ATP-dependent DNA helicase RecG [Clostridium lentocellum DSM 5427]
 gi|326541650|gb|ADZ83509.1| ATP-dependent DNA helicase RecG [Clostridium lentocellum DSM 5427]
          Length = 687

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 242/654 (37%), Positives = 369/654 (56%), Gaps = 29/654 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKIS--EISEERIVTITGYISQHSSFQLQKRRPYKILLN----D 96
           D++ ++P  + DR     ++  E+ E + V +T      S  Q+ K+   KIL++    D
Sbjct: 31  DMIEHYPREYEDRRQITPLAACELDEPQNVLVTVC----SKPQIAKKG-NKILVSFRVKD 85

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFP 154
            T  I + FF +    ++N F  G K  + GKIK    ++ M  P Y  +   S+     
Sbjct: 86  ETSSIMVTFFGQA--YMRNNFVMGEKYLLYGKIKHKYGQLEMDSPEYQKVADPSKLGTVA 143

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
            I  +Y     LS  + + +I   L+  LP + + + + ++++    S  EA   IH P 
Sbjct: 144 KITPIYPTTQKLSQKVIRGLIEHCLNEVLPEVKDHLPERIIKQYHLVSKEEALRGIHFP- 202

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFS 272
             KD E    AR+RL ++EL   Q++L  ++  F  K +GI  +V  ++ +  + ++PF 
Sbjct: 203 --KDSEHFFEARKRLVFEELFMLQLSLYQLKADFATKLMGIAHDVTSEL-KAFMASLPFE 259

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T +Q+  +++I+ DM     M R++QGDVGSGKT++A I++   V+ G Q  +MAP  +
Sbjct: 260 LTGAQKRVMREIVGDMKSPYAMNRLVQGDVGSGKTVIAAISLFLVVKDGFQGALMAPTEV 319

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           L  QHYEFIK   +   I V ++TG+     +R+ L  I   +  I++GTHAL +D+++ 
Sbjct: 320 LVVQHYEFIKGIMEPFGIQVGLLTGSTTAKQKRELLAAIKTNEIQIVVGTHALIEDNVEI 379

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             L LVI DEQHRFGV+QRLKLT+K   P V++MTATPIPRTL L   GD+DIS I E P
Sbjct: 380 PNLGLVITDEQHRFGVRQRLKLTEKGHLPDVMVMTATPIPRTLALILYGDMDISIIDELP 439

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE-KKESNFRSVVERFNSLH 511
            GR+PI+T  +       +   ++  +  G++ Y ICP +EE +K S  ++V+E    L 
Sbjct: 440 PGRQPIRTNAVDSAYHPRIYRFIEKQIEAGRQCYIICPMVEESEKTSELKNVIEYTEYLK 499

Query: 512 EHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                   IA +HG+M   +K  +M  F     K+L++TTVIEVG++V +A+II+IENAE
Sbjct: 500 TQVFPHIPIAYLHGKMKPKEKNEIMAQFARAETKILVSTTVIEVGVNVPNATIILIENAE 559

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQ 627
            FGLAQLHQLRGRVGRG+  S C+L+     SKN  T  RL +++ + DGF+IAE DLK 
Sbjct: 560 RFGLAQLHQLRGRVGRGKHQSYCVLVSD---SKNKVTKKRLKIMEESTDGFVIAETDLKL 616

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           R  GE  G KQ G+P+  IA       +L   +   K++L  DP+L   +   +
Sbjct: 617 RGPGEFFGTKQHGLPEMKIANLYTDAKVLGEVQGCVKNLLAIDPNLGETQNNQL 670


>gi|313204849|ref|YP_004043506.1| ATP-dependent DNA helicase recg [Paludibacter propionicigenes WB4]
 gi|312444165|gb|ADQ80521.1| ATP-dependent DNA helicase RecG [Paludibacter propionicigenes WB4]
          Length = 698

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 239/682 (35%), Positives = 378/682 (55%), Gaps = 48/682 (7%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG K +  L+K +   +A      DLL ++P  ++DR     + EISE+   + + G I
Sbjct: 13  GVGPKKADLLNKELGIRSAE-----DLLRHYPYKYVDRSRFYYLHEISEDMPFIQVKGQI 67

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
            +         +    +  DG   I L++F +  + + + +  G +  V GK      R 
Sbjct: 68  IRFEKVGEGPTQRLTAIFTDGRETIELVWF-KGVKYVIDKYKTGVQYVVFGKPSPFNGRF 126

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLP-------------------TGLSVDLFKKIIVE 177
            +VHP              IE V  LP                   + L+  + +KII  
Sbjct: 127 NIVHPE-------------IELVSQLPPPEQMGLQPFYNTSEKMKNSFLNSKMLQKIIFP 173

Query: 178 ALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            +  + P +P+ +   LLQK +  ++ E+   +H P+ A      + AR+RL ++EL   
Sbjct: 174 VIQSIKPGIPDTLPAYLLQKFALMNLTESLVNVHFPKNANAL---NKARQRLKFEELFYI 230

Query: 237 QIALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRM 294
           Q+ +L   K   +   G      G       ++ +PF  T +Q+  +++I  D++   +M
Sbjct: 231 QLNILQQTKWRDQHFKGFVFGQIGHYFNTFFKDFLPFELTGAQKRVLREIRIDVASGRQM 290

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVGSGKTLVAL+AM  AV+ G QA IMAP  ILA QH+  + ++  +  + V +
Sbjct: 291 NRLLQGDVGSGKTLVALMAMLMAVDNGFQACIMAPTEILATQHFASLTEFLGDMGVSVAL 350

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+     R +  E++  G+ +I+IGTHAL +D++Q+  L LV++DEQHRFGV+QR +L
Sbjct: 351 LTGSTRPKARVELHEKLRSGELNILIGTHALIEDTVQFSNLGLVVIDEQHRFGVEQRARL 410

Query: 415 TQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
            +K    PH+L+MTATPIPRTL +T  GD+ +S I E P GRKPI+T     N+   + +
Sbjct: 411 WRKNVQPPHILVMTATPIPRTLAMTLYGDLSVSVIDELPPGRKPIQTYHYYENKRQGLNQ 470

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKES 532
            +   +  G++ Y + P I+E ++ + +++   +  + E F T +I+ +HG++   +K+ 
Sbjct: 471 FIAKQVEAGRQIYIVYPLIQESEKIDLQNLETGYEYMREVFPTYTISKVHGKLKPAEKDH 530

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M  F  G  ++++ATTVIEVG++V +AS+++IE+A+ FGL+QLHQLRGRVGRG E S C
Sbjct: 531 EMQKFVTGQTQIMVATTVIEVGVNVPNASVMVIESAQRFGLSQLHQLRGRVGRGAEQSFC 590

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPEL 651
           ILL    L+ ++  R+ ++  T DGF I+E DLK R  G++ G +QSG+P  L IA    
Sbjct: 591 ILLTDYKLASDTRKRMEIMVRTNDGFEISEADLKLRGPGDLEGTQQSGLPFDLKIANLAQ 650

Query: 652 HDSLLEIARKDAKHILTQDPDL 673
              +LEIAR  A  IL  DP L
Sbjct: 651 DGKMLEIARNAAMEILEDDPQL 672


>gi|77408999|ref|ZP_00785719.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae COH1]
 gi|77172383|gb|EAO75532.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae COH1]
          Length = 671

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 242/669 (36%), Positives = 373/669 (55%), Gaps = 29/669 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P+S  +G G K +    K+      +     DLL Y+P  + D   +     +  E+
Sbjct: 3   LQSPISNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEK 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 57  AV-ITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQP--YLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA--LSRLPV 184
           GK    K+ I  +    +    +D   P    VY +  G+S     K I  A  ++    
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDDMQP----VYRVSQGISQSTLIKAIKSAFEINAHLE 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E +   LL K      ++A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLGKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E  G+ I       +  + ++PF  T +Q+ ++ +IL DMS    M R+LQGDVG
Sbjct: 224 AENKSETNGLSILYSKHAMETKISSLPFILTNAQKRSLDEILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++   +  I   I+T  M  A 
Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELFPDLSI--AILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR+
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARR 640

Query: 662 DAKHILTQD 670
            A  I+  +
Sbjct: 641 VASDIVKDN 649


>gi|229031485|ref|ZP_04187485.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1271]
 gi|228729774|gb|EEL80754.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1271]
          Length = 682

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/663 (34%), Positives = 375/663 (56%), Gaps = 33/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPV 184
            + +  I +   H+     Q      +E VYS+   L+V   ++ I +A      S + V
Sbjct: 119 DQHRQTIAVSELHFGPVARQQE----VEPVYSVKGKLTVKQMRRFIAQAFKEYGKSIVEV 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +   L + K  P   EA   +H P   +D +    AR R  Y+E    Q+ +  +R
Sbjct: 175 LPDGL---LSRYKLLPRY-EALRALHFPAGQEDLK---QARRRFVYEEFFLFQLKMQTLR 227

Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K  ++   G    +     Q+ +  +PF  T +Q   + +I++DM+   RM R+LQGDVG
Sbjct: 228 KMERENSKGTKKEIPSAELQEFIDALPFPLTGAQSRVVDEIMKDMTSPYRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++    
Sbjct: 288 SGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P V
Sbjct: 348 RREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G+
Sbjct: 408 LFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F    
Sbjct: 468 QAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S
Sbjct: 528 VQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
           +    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +HD   LE AR
Sbjct: 587 ETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-VHDYRALETAR 645

Query: 661 KDA 663
           +DA
Sbjct: 646 QDA 648


>gi|213963738|ref|ZP_03391988.1| ATP-dependent DNA helicase RecG [Capnocytophaga sputigena Capno]
 gi|213953618|gb|EEB64950.1| ATP-dependent DNA helicase RecG [Capnocytophaga sputigena Capno]
          Length = 704

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 243/696 (34%), Positives = 377/696 (54%), Gaps = 35/696 (5%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L   +S  RGVG + +  L   +         + DLL   P+ +IDR    KI+E+  
Sbjct: 5   NILHTSISHLRGVGAQRAELLKTELGI-----YEYQDLLNLFPNRYIDRTKFYKINELQN 59

Query: 67  ERI-VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKI 123
               V + G I    + +   ++  +++    D TG + L++F +  + L++        
Sbjct: 60  NNAEVQLVGKIVNLRTVESAHQKSNRLVATFVDETGTMELVWF-KGLKWLRDSLKINEPY 118

Query: 124 TVTGKIKKLKNRIIMVHPHYIF--------HNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175
            + GK+        M HP            HNS    +P  E +      ++  + ++++
Sbjct: 119 VIFGKLNFFGGTFSMPHPEMDLLSEFKKTGHNSIQPVYPSTEKLAK--RNITNRVMRQLV 176

Query: 176 VEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
                 +     E +   +L   +  S  EA   IH P         + A  RL ++EL 
Sbjct: 177 QTVFEEIGYNFTENLPDTILTAMNLISKQEAMCNIHFPTNQS---LLTKASIRLKFEELF 233

Query: 235 AGQIAL----LLMRKQFKKEIGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMS 289
             Q+ L    LL +++F+   G P    G         ++PF  T +Q+ A+K+I  D+ 
Sbjct: 234 YIQVQLVRKNLLHKQKFQ---GQPFKKVGDAFMNFYNYHLPFPLTNAQKRALKEIRADVG 290

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
              +M R+LQGDVGSGKT+VAL+ M  AV+   QA +MAP  ILA QHY+ I +  +NT 
Sbjct: 291 SNAQMNRLLQGDVGSGKTIVALMTMLLAVDNHCQACLMAPTEILANQHYQTISELLKNTG 350

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           I V ++TG+     RR   E++  G+  I+IGTHAL ++ +Q+  L L I+DEQHRFGV+
Sbjct: 351 ITVALLTGSSKTKERRILDEQLQSGELSILIGTHALLEEKVQFQNLGLAIIDEQHRFGVE 410

Query: 410 QRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           QR KL +K T  PH+L+MTATPIPRTL ++  GD+D+S I E P GRKPIKT+    NR 
Sbjct: 411 QRAKLWRKNTIPPHILVMTATPIPRTLAMSVYGDLDVSVIDELPPGRKPIKTLHQYENRR 470

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRM 525
            E  E +K  + +G++AY + P IEE +  +F+++ E +  +   F      ++I+HG++
Sbjct: 471 AETYEFIKREIDKGRQAYVVYPLIEESEALDFKNLTEGYEYITASFPLPKYKVSIVHGKL 530

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +K++ M+ F     ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGR
Sbjct: 531 KPAEKDAEMERFLRNETQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGR 590

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
           G E S CILL    +S  +  R+  +  T DGF IAE DLK R  G+++G +QSG+    
Sbjct: 591 GSEQSYCILLTGNKMSNETRIRMETMVRTNDGFEIAEVDLKLRGPGDLMGTQQSGVLALK 650

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           IA       +L+ AR  A  ++  DP+L   + Q +
Sbjct: 651 IADLVKDQDILKAARFQAIDLVKADPNLELPQNQRV 686


>gi|171779290|ref|ZP_02920261.1| hypothetical protein STRINF_01138 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282346|gb|EDT47773.1| hypothetical protein STRINF_01138 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 671

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 243/634 (38%), Positives = 363/634 (57%), Gaps = 25/634 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGE 100
           DLL Y+P  + D   +  +  +  E+ V I G +   ++ Q    KR      +  G   
Sbjct: 31  DLLLYYPFRYEDFKSKSILDLVDGEKAV-IVGTVVTPANVQYYGYKRNRLSFKIKQGEAV 89

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           I + FF +    L +    G  + + GK   LK+ +  +    I    +D   P    VY
Sbjct: 90  IAISFFNQP--YLADKVELGSDVAIFGKWDALKSAVTGMK---ILAQVEDDMQP----VY 140

Query: 161 SLPTGLSVDLFKKIIVEA--LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
            +  G+S +   K I  A  L     LPE + +  L K      A+A   +H P   KD 
Sbjct: 141 RVAQGISQNALIKAIKSAFALGAQNWLPENLPQVFLDKYRLLGRAKATEAMHFP---KDL 197

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKS 276
                A  R+ ++EL   Q+ L  ++   K E  G+ I   E K+A KI  ++PF  T  
Sbjct: 198 AEYKQALRRIKFEELFYFQMNLQALKADNKSEANGLMIAYDEQKVADKIA-SLPFDLTGG 256

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+ ++ DIL DM     M R+LQGDVGSGKT+VA +AM AA  AG Q+ +M P  ILA+Q
Sbjct: 257 QKRSLSDILSDMRSGGHMNRLLQGDVGSGKTVVASLAMYAAYTAGYQSALMVPTEILAEQ 316

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+E + +   +  I   I+T  M  A+++ AL  IA G   +I+GTHAL QD++ Y++L 
Sbjct: 317 HFESLMQLFPDLSI--AILTSGMKAANKKAALAAIADGSVDMIVGTHALIQDTVSYHRLG 374

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            VI DEQHRFGV QR    +K   P VL+MTATPIPRTL +T+ G++D+S I E PAGRK
Sbjct: 375 FVITDEQHRFGVNQRRIFREKGENPDVLMMTATPIPRTLAITAFGEMDVSIIDELPAGRK 434

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           PI T  +   ++D V++ +K  L +G +AY I P IEE +  + ++ +     L E+F  
Sbjct: 435 PIITRWVKHEQLDIVLDWVKKELPKGAQAYVISPLIEESESLDLKNAIALHEDLSEYFAD 494

Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            +++A++HGRM + +KE++M  FK    ++L++TTVIEVG++V +A+I+II +A+ FGL+
Sbjct: 495 CANVALMHGRMKNEEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMIIMDADRFGLS 554

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG++ S  IL+ +P  ++    R+ ++  T DGF +AE DLK R  GEI 
Sbjct: 555 QLHQLRGRVGRGDKQSYAILVANPK-TETGKKRMKIMTETTDGFALAEADLKMRGSGEIF 613

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           G +QSG+P+F +A      ++LE AR+ A  I++
Sbjct: 614 GTRQSGIPEFQVADIVEDYNILEEARRVASQIVS 647


>gi|163790813|ref|ZP_02185238.1| ATP-dependent DNA helicase RecG [Carnobacterium sp. AT7]
 gi|159873881|gb|EDP67960.1| ATP-dependent DNA helicase RecG [Carnobacterium sp. AT7]
          Length = 682

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 230/648 (35%), Positives = 368/648 (56%), Gaps = 20/648 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL ++P  + D   R  + EI ++  VT+ G +      S F  +K R  +++++    
Sbjct: 33  DLLSHYPIRYEDIQER-DLLEIEDQEKVTLKGNVVSEAVVSRFGPKKNRLSFRLIIEHAV 91

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I++ FF +    LK+    G +I V GK    +  +  +       +S+  +F   E+
Sbjct: 92  --ISVTFFNQA--YLKSKIVTGEEIAVFGKWDAKRKSLTGIKILGTRSDSEKGDF---ES 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VYS    +      ++I EA +     +PE +  +L  K    S  +A   +H P   K 
Sbjct: 145 VYSANKHIKQSTILQLITEAYNLYQDHIPEVVPPELRIKYRLISHRDAVYAMHFPASEKQ 204

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKS 276
                 AR  + ++E L  Q+ + ++RK+ K    G  +N      +  +  +PF  TK+
Sbjct: 205 ---KKQARREVVFEEFLLYQMRMQIVRKKQKAMGKGNTLNYNVTDLRNFIETLPFELTKA 261

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+  + +I  D+ Q   M R+LQGDVGSGKT+VA IA+ AA   G Q+ +M P  ILA+Q
Sbjct: 262 QKRVVNEICSDLRQPIHMHRLLQGDVGSGKTIVAAIALYAATNVGVQSALMVPTEILAEQ 321

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H E + +     ++ + ++TG+     RR  LE++A+G+  ++IGTHAL Q  + + KL 
Sbjct: 322 HMESLSELFNPLEVRIALLTGSTKTKDRRLILEQLANGELDVLIGTHALIQQDVYFSKLG 381

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV QR  L  K     VL MTATPIPRTL +T+ G++D+S I E PAGR 
Sbjct: 382 LVITDEQHRFGVNQRKLLRDKGKDADVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRI 441

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PI+T  I     ++ +E +++ L +G +AY ICP IEE +  + ++  + +  L  ++  
Sbjct: 442 PIQTTWIKPQNFEKTLEFIELQLRKGSQAYVICPLIEESETMDVKNATDIYEKLTAYYGD 501

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              + ++HG+M   +KES M++FK    ++L++TTVIEVG++V +A+ +II +A+ FGL+
Sbjct: 502 RFQVGLLHGKMKSSEKESTMENFKEKKLQVLVSTTVIEVGVNVPNATTMIIYDADRFGLS 561

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG++ S CIL+ +P  ++N   R+ ++  T DGF+++E+DL+ R  G++ 
Sbjct: 562 QLHQLRGRVGRGDKESYCILVANPK-TENGMERMKIMTETTDGFILSEKDLELRGPGDLF 620

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           G KQSG+P F I         LE AR++A  ++ Q   LT+   Q +R
Sbjct: 621 GNKQSGLPDFKIGDIIGDFGALEAARQEANQLVNQKDFLTNEVYQQLR 668


>gi|325859672|ref|ZP_08172802.1| ATP-dependent DNA helicase RecG [Prevotella denticola CRIS 18C-A]
 gi|327312996|ref|YP_004328433.1| ATP-dependent DNA helicase RecG [Prevotella denticola F0289]
 gi|325482598|gb|EGC85601.1| ATP-dependent DNA helicase RecG [Prevotella denticola CRIS 18C-A]
 gi|326944569|gb|AEA20454.1| ATP-dependent DNA helicase RecG [Prevotella denticola F0289]
          Length = 698

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 237/674 (35%), Positives = 376/674 (55%), Gaps = 30/674 (4%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74
            +GVG +    LS+ +         + DLL Y P  ++DR     ISE+S +   V I G
Sbjct: 11  LQGVGPRRKEILSRELGIRT-----YRDLLEYFPYKYVDRTKVYLISELSPDMPFVQIKG 65

Query: 75  YISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
            I +    +  KRR   I    DG G I  L ++  T+ +   +   R+  V GK     
Sbjct: 66  RIIRFEETETGKRRKRVIAHFTDGHG-ICDLVWFNGTKYVYQNYQLNREYVVFGKPAVFN 124

Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRLP----- 183
            R    HP         +N   ++  Y         G++    +K+    + +L      
Sbjct: 125 GRFQFSHPDIDDAAQLQLNDMGMQPFYITTEKMKKAGITSRAMEKLTKTLIGKLSEPLEE 184

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            LP +I   L       S   A   IH PR   D   T  AR RL ++EL   Q+ +L  
Sbjct: 185 TLPPFITSHL----HLISRDAALRKIHYPRSVDD---TQRARVRLKFEELFYVQLNILRY 237

Query: 244 RKQFKKEI-GIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
               +++  G   N +  +       N+PF  T +Q+  + +I  DM+   +M R+LQGD
Sbjct: 238 ASDHRRKYRGYIFNRIGAQFNWFYTHNLPFELTGAQKRVMHEIRADMAGGRQMNRLLQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVAL++M  A++ G QA +MAP  ILA+QH + ++ + +   + +E++TG +  
Sbjct: 298 VGSGKTLVALMSMLIAIDNGYQACMMAPTEILAEQHLQTLRDFLKGMNLRIELLTGIVKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TA 420
             RR+ L+ +  G  HI++GTHAL +D +Q+++L + +VDEQHRFGV QR +L  K+   
Sbjct: 358 KRRREVLDGLMDGSIHIVVGTHALLEDKVQFHRLGMAVVDEQHRFGVAQRARLWSKSENP 417

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    +++  +   ++  + 
Sbjct: 418 PHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTLHKYDDQMPSLYNGIRQQIR 477

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
            G++ Y + P I+E +  + +++ + F++L + F    ++ +HG+M D +KE+ M  F +
Sbjct: 478 LGRQVYIVYPLIKESERMDLKNLEDGFSALCDIFPEFRLSKVHGKMKDKEKEAEMQKFVS 537

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+    
Sbjct: 538 GQTQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVTSHR 597

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEI 658
           L+K +  R+ ++  T DGF IAE DLK R  G++ G +QSG+   L IA       ++++
Sbjct: 598 LTKETSRRIDIMCETNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQIVQM 657

Query: 659 ARKDAKHILTQDPD 672
           AR++A+ I+  DPD
Sbjct: 658 AREEAQKIIDADPD 671


>gi|291528911|emb|CBK94497.1| RecG-like helicase [Eubacterium rectale M104/1]
          Length = 688

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 237/682 (34%), Positives = 364/682 (53%), Gaps = 38/682 (5%)

Query: 11  APLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +P++  +G+G+K     +K  +   G        D+L + P  ++     P+I++I E  
Sbjct: 5   SPITAVKGIGEKTQKAFAKMGVYTVG--------DILLHFPRDYVKF---PEITDIDELN 53

Query: 69  IVTITGYISQHSSFQ----LQKRRPYKILLND--GTGEITLLFFYRKTEMLKNVFFEGRK 122
            V ++   + H+  +    ++     +I L D    G +  L +YR    LK    +GR 
Sbjct: 54  NVNVSSTYAIHAVIKKAPVVKNTARMQITLQDIGSPGHMIQLVWYR-MPYLKAQLVQGRH 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           +   G IK    R +M  P        +     ++ VYS+ TG++ +L  K I E LS  
Sbjct: 113 LIFYGHIKPKGGRYVMEQPVVYEVQKYEAIRDTLQPVYSVTTGVTNNLIVKTIKETLSHD 172

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            +L +++ KD+  +  F     A   IH P    DF+    AR RL +DE     + ++ 
Sbjct: 173 TLLSDYLPKDIRSRYGFCEYNYAMKQIHFP---DDFDALVEARRRLVFDEFF---LFIMG 226

Query: 243 MRKQFKKEIGIPINVE---GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           MR Q KK+       E         ++  +P+  T +Q+  I +I QD+     M R++Q
Sbjct: 227 MRYQNKKQQKDKNEFEFTDDAFIDGLIDKLPYELTGAQKKTIDEIKQDIKSPYVMQRLIQ 286

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEII 355
           GDVGSGKT+VA + MA A + G Q+ IMAP  +LA QHYE     + ++  ++ ++  ++
Sbjct: 287 GDVGSGKTIVAFLLMAWASKCGYQSAIMAPTEVLANQHYETFCSLVSQFGLDSPVV--LL 344

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG+M    +R+A  R+ + +  +IIGTHAL Q+   +  L LVI DEQHRFGV+QR   +
Sbjct: 345 TGSMTAKQKREAYARLENEKNALIIGTHALIQEKADFSNLSLVITDEQHRFGVKQRESFS 404

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K   PH+L+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++      +    +
Sbjct: 405 DKGRKPHILVMSATPIPRTLAIIIYGDMDISVINEVPAKRLPIKNCVVGTAFRPKAYSFI 464

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDKESV 533
           +  +  G +AY ICP +EE + S   +V +  N L       I   +++GRM    K+ V
Sbjct: 465 EEQVRAGHQAYVICPLVEETENSEGENVTDYANVLKAALPKDITVDVLNGRMKSKAKDEV 524

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F N   ++L++TTV+EVG++V +A++++IENA+ FGLAQLHQLRGRVGRG+  S CI
Sbjct: 525 MQRFANNESQVLVSTTVVEVGVNVPNATVMMIENADRFGLAQLHQLRGRVGRGDAQSYCI 584

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
            +     SK S  RL +L  + DGF IA EDLK R  G+  GI+QSG   F +A      
Sbjct: 585 FINS-SNSKKSKKRLEILNKSNDGFYIASEDLKLRGPGDFFGIRQSGDLAFALADVYQDS 643

Query: 654 SLLEIARKDAKHILTQDPDLTS 675
            +L+ A +    +L  DP L +
Sbjct: 644 DVLKEASEMVDEVLEADPALCT 665


>gi|313115462|ref|ZP_07800929.1| ATP-dependent DNA helicase RecG [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622229|gb|EFQ05717.1| ATP-dependent DNA helicase RecG [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 686

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 231/673 (34%), Positives = 357/673 (53%), Gaps = 30/673 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID--RHYRPKISEISEERI 69
           P+   +GVG K +    K+            DLL ++P  +ID  + Y    +    E +
Sbjct: 14  PVRYLKGVGPKTAERFEKL------GIVTLADLLCHYPRRYIDFTKPYSIAEAPTDVECV 67

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF-----YRKTEMLKNVFFEGRKIT 124
           V    +           RR  +I   D    + + +F      +K ++ +  +F+G    
Sbjct: 68  VRAEVFAKPGGRILPGGRRMERITAGDDVSSLEITWFNNPYAAQKLQLGQEYYFQG---I 124

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           VTG + + +    MV+P      ++ +     EAVY    GL+ +   K + + L    +
Sbjct: 125 VTGGMLRRQ----MVNPQ--VRTAEQIKASPFEAVYPQTEGLTSNAIAKCVRQLLPHAEL 178

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +  ++L K    S A+A   IH P      E    AR RL Y+ELL  Q+ +  M+
Sbjct: 179 LPDPLPPEMLAKYRLLSKADAVRAIHCPATE---EQAYAARRRLIYEELLVLQLGIGRMK 235

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            +     G P+ +          ++PFSPT +Q  A+ +IL DM+ +  M R+LQGDVGS
Sbjct: 236 NRGAAATGAPMQLADP--SLFWASLPFSPTGAQRRAVSEILADMAGETSMNRLLQGDVGS 293

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA  A+ A + AG QA ++AP  ILA QH E + +      + V ++TG M  A R
Sbjct: 294 GKTLVAAAAIWACIRAGYQAALLAPTEILATQHAEGLNRMLAPFGMRVALLTGGMKAAAR 353

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R  L  I + +A +++GTHA+  + +++ +L L ++DEQHRFGV+QR  L +KA  PH+L
Sbjct: 354 RTTLAAIRNDEADLVVGTHAILSEGVEFARLGLAVIDEQHRFGVRQRGMLAEKAANPHLL 413

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPRTL L   GD+DIS + E P GR P+KT  I   +  ++   L   +  G++
Sbjct: 414 VMSATPIPRTLGLLIYGDLDISILDELPPGRTPVKTRCITGKKRRDLYHFLDQEIGRGRQ 473

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP IE+  +    +V   +  + +       + ++HG++   +K +VM+ FK G  
Sbjct: 474 VYLVCPAIEDTPDGGLNAVKSYYEDIAKALLPERRVGLMHGKLKPKEKAAVMEDFKAGRL 533

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
             L++TTVIEVG+DV +AS+++IENAE +GL+ LHQLRGRVGRG   S C L+     S+
Sbjct: 534 DALVSTTVIEVGVDVPNASVMVIENAERYGLSALHQLRGRVGRGAAESWCFLVSD-NQSE 592

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           N   RL  L +T DGF +A+ DL+ R  G+  G +Q G+P   IA        L  A+ +
Sbjct: 593 NVQKRLKFLCSTTDGFAVAQYDLETRGPGDFFGSRQHGLPTLQIADLMNDTRTLHAAQAE 652

Query: 663 AKHILTQDPDLTS 675
           A  +L  DP L +
Sbjct: 653 AVAMLADDPLLEA 665


>gi|308069664|ref|YP_003871269.1| ATP-dependent DNA helicase recG [Paenibacillus polymyxa E681]
 gi|305858943|gb|ADM70731.1| ATP-dependent DNA helicase recG [Paenibacillus polymyxa E681]
          Length = 695

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 231/659 (35%), Positives = 367/659 (55%), Gaps = 20/659 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99
           D+L Y+P  + D   R  +SE+ +   +T+   I      Q   R+     K++  D   
Sbjct: 46  DMLEYYPFRYEDYRLR-SLSEVKDGDKITVQAKIMGIPVLQRYGRKSRLTCKLMAEDWM- 103

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
             T  +F R    +K     GR+I VTGK   LK R+ M      F +        ++ V
Sbjct: 104 -FTATWFNR--HFMKEQLTSGREIVVTGKWD-LK-RMQMTVADSEFPDKGAARSGTLQPV 158

Query: 160 YSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           YS+   ++    +K + + L +   ++PE + + L++K S     +A   IH P+  ++ 
Sbjct: 159 YSIGGKITQSWMRKTMSQTLQQFGEMIPEILPELLVRKYSMMPRKQAIAGIHQPQDNREG 218

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +    AR R+ Y+EL   Q+ +   R   + +  G+   V+    ++ +R +PF  T +Q
Sbjct: 219 Q---EARRRMVYEELFLFQLKMQAFRALNRGRADGVVHTVDNATIREFVRALPFELTDAQ 275

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +IL D+     M R+LQGDVGSGKT+VA I + A V +G Q  +M P  ILA+QH
Sbjct: 276 KKVELEILHDLRSPYCMNRLLQGDVGSGKTVVAAIGLFATVRSGFQGALMVPTEILAEQH 335

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
              + K  +   I V ++TG+     R++ L  +  G   I++GTHAL Q+ + + +L L
Sbjct: 336 MRSLHKLFEPFGISVGLLTGSTTGKKRKELLAALQMGLLDIVVGTHALIQEDVYFRQLGL 395

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           V+ DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ GD+D+S ++E+P GR P
Sbjct: 396 VVTDEQHRFGVNQRSVLRRKGYNPDVLTMTATPIPRTLAITAFGDMDVSTLSERPKGRIP 455

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I T  +    +D V+  +   + +G++AY ICP IEE ++ + ++ ++    + + F   
Sbjct: 456 ISTYWVKHELMDRVLGFISREVDQGRQAYLICPLIEESEKLDVQNAIDLHIQMQQAFPHY 515

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            + ++HGRM+  +KE VM SF     +LL++TTV+EVG+DV +A+++II +A+ FGL+QL
Sbjct: 516 RVGLLHGRMTPAEKEEVMRSFYANEVQLLVSTTVVEVGVDVPNATLMIIMDADRFGLSQL 575

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG   S C+L+  P  S+    R+ V+ +T+DGF +A  DL  R  G+  G 
Sbjct: 576 HQLRGRVGRGAHASYCVLIADPK-SEVGQERMKVMTDTDDGFEVARRDLDLRGPGDFFGT 634

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           KQSG+P+F +A       +LE AR+DA  ++      TS + +++R  L   Q  + FQ
Sbjct: 635 KQSGLPEFRLADMVADFEVLEKAREDATDLIKDASFWTSPQYEALRGYL---QKEQIFQ 690


>gi|260171931|ref|ZP_05758343.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D2]
 gi|315920243|ref|ZP_07916483.1| ATP-dependent DNA helicase recG [Bacteroides sp. D2]
 gi|313694118|gb|EFS30953.1| ATP-dependent DNA helicase recG [Bacteroides sp. D2]
          Length = 698

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 243/681 (35%), Positives = 368/681 (54%), Gaps = 43/681 (6%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   + +     DL++Y P  +IDR     I EI      + + G I
Sbjct: 14  GVGPQKAAVLNKELEIYSLH-----DLIYYFPYKYIDRSRIYYIHEIDGNMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F     +L         I + GK      RI
Sbjct: 69  LGFETIGEGRQRRLTAHFSDGTGVVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP     +   ++   ++  YS    +         +E +    +      LPE + 
Sbjct: 128 NVAHPDVDKPDDLKLSSVGLQPYYSTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP-----ARERLAYDELLAGQIALLLMRK 245
             LL +     + EA   IH P        T+P     A+ RL ++EL   Q+ +L   K
Sbjct: 188 PKLLTEHHLMPLTEALRNIHFP--------TNPDVLRRAQYRLKFEELFYVQLNILRYAK 239

Query: 246 QFKKEIGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
             +K         G I +K+         +N+PF  T +Q+  +K+I  D+    +M R+
Sbjct: 240 DRQKR------YRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRL 293

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++TG
Sbjct: 294 LQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTG 353

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++    R   L  +  G   I+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L  K
Sbjct: 354 SIKGKRREAILSGLLTGDVQILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSK 413

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   ++
Sbjct: 414 NVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRSVR 473

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMD 535
             + EG++ Y + P I+E ++ + +++ E +  + E F   ++  +HG+M   +K+  M 
Sbjct: 474 KQIDEGRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPKCTVCKVHGKMKPAEKDEQMQ 533

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+
Sbjct: 534 LFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILV 593

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDS 654
            +  L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       
Sbjct: 594 TNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRDGQ 653

Query: 655 LLEIARKDAKHILTQDPDLTS 675
           LL+  R  A+ I+ QDP   S
Sbjct: 654 LLQYVRAIAESIVEQDPAAQS 674


>gi|312131452|ref|YP_003998792.1| ATP-dependent DNA helicase recg [Leadbetterella byssophila DSM
           17132]
 gi|311907998|gb|ADQ18439.1| ATP-dependent DNA helicase RecG [Leadbetterella byssophila DSM
           17132]
          Length = 697

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 231/654 (35%), Positives = 363/654 (55%), Gaps = 15/654 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           DLL ++P  + DR    KISE+++      + G I        + +       +DG   +
Sbjct: 34  DLLEHYPFRYEDRTRFYKISELTDTLPAAQLLGKIKSVELVGGKGKSRLVATFSDGVASM 93

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            L++F +       +   G    V GK         + HP    + S        + +Y 
Sbjct: 94  ELVWF-QGVSYFHKILQIGANYIVYGKPSLFGGIFSIQHPEIELYKSDRPLPKYFQPIYH 152

Query: 162 LPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDL----LQKKSFPSIAEAFNIIHNPRKA 215
           L   L     +        R  LP++ E I + L    L+K    S  EA+  +H PR  
Sbjct: 153 LTDKLRKKFIESKTFTQWFRTLLPLVQEHIHETLPEFLLKKYKLVSKKEAYYYLHLPRSP 212

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPT 274
            +      A  RL ++EL   QI L+ +    K E  G   N    + +    ++PF  T
Sbjct: 213 LE---QLHANRRLKFEELFYNQIKLISLSLVRKNEYPGQVFNKTTLLTKFYQDHLPFDLT 269

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            +Q+  I++I  D+    +M R++QGDVGSGKT+VA I M  A++ G QA +MAP  ILA
Sbjct: 270 GAQKRVIREIFGDLKSGRQMNRLVQGDVGSGKTIVAFICMLMAIDGGAQACMMAPTEILA 329

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           QQH+  +KK+    ++ + ++TG+  +  R +  + +  GQ HI++GTHA+ +D +Q+  
Sbjct: 330 QQHFSNLKKFADALELEIRLLTGSSTKKEREEIHQGLITGQIHILVGTHAVLEDVVQFQN 389

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           L L ++DEQHRFGV QR KL +K     PH+L+MTATPIPRTL +T  GD+DIS+I E P
Sbjct: 390 LGLCVIDEQHRFGVAQRAKLWEKNKKLYPHMLVMTATPIPRTLAMTLYGDLDISEIDELP 449

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            GRKPIKTV    +    V   +K  L++G++ Y + P IEE ++ + +++ + + ++  
Sbjct: 450 PGRKPIKTVHRFESSRLAVWGFMKEELAKGRQIYVVFPLIEESEKLDLKNLFDGYENIRA 509

Query: 513 HFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            F   +++I+HG+M   DKE  M  FK G  ++++ATTVIEVG+DV +AS+++IE+A  F
Sbjct: 510 AFPEFAVSIVHGKMKPKDKEYEMQRFKKGETQIMVATTVIEVGVDVPNASVMVIESAHRF 569

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+QLHQLRGRVGRG E S CIL+    LS ++  R+  +  +E+GF I++ DL+ R  G
Sbjct: 570 GLSQLHQLRGRVGRGAEQSYCILMTDYKLSADTRKRMETMVESENGFYISKVDLELRGPG 629

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           ++ G +QSG+    +A     + +L+IAR++A  IL  DP L+    ++I++ L
Sbjct: 630 DLSGTQQSGLVDLKLANLAKDEEILKIAREEAFTILQMDPSLSMPEHKAIQMHL 683


>gi|313618310|gb|EFR90360.1| ATP-dependent DNA helicase RecG [Listeria innocua FSL S4-378]
          Length = 580

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/565 (38%), Positives = 339/565 (60%), Gaps = 20/565 (3%)

Query: 114 KNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGL---SVD 169
           KN    G  +T++GK  K + +I           N ++     +E VY L   L   ++ 
Sbjct: 1   KNKISVGETVTISGKWDKSRAQITASKIKIGAVENEEE-----LEGVYRLKGTLRNKTMQ 55

Query: 170 LFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
            + ++  ++ S+   + E I  +LL+K      +EA  ++H P   K+ E    AR R+ 
Sbjct: 56  KYTRLAFDSYSK--DIEEVIPANLLEKYQLMDRSEAVRVLHFP---KNNEELKQARRRMV 110

Query: 230 YDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
           Y+E L  Q+ +   RK + +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM
Sbjct: 111 YEEFLLFQLKMQFFRKIEREKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDM 170

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
                M R+LQGDVGSGKT+VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q  
Sbjct: 171 LSHFHMNRLLQGDVGSGKTVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPF 230

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            I V ++T ++    RR+ L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV
Sbjct: 231 DITVGLLTSSVKGKQRRELLAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGV 290

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +
Sbjct: 291 AQRRILREKGEYPDVLFMTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQML 350

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMS 526
           D VI  ++  + +G + Y ICP IEE ++ + ++ ++ FN L   + +     ++HG++ 
Sbjct: 351 DRVIGFMEKEIDKGHQVYIICPLIEESEKLDVQNAIDVFNILQNKWGTKYVPGLMHGKLL 410

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DKE +M  F +     L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG
Sbjct: 411 PADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRG 470

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            + S CIL+  P  ++    R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +
Sbjct: 471 ADQSYCILIADPK-TEVGKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKV 529

Query: 647 AQPELHD-SLLEIARKDAKHILTQD 670
           A   +HD  +LEIAR+DA H++ ++
Sbjct: 530 ADM-VHDYRVLEIARQDAVHMIFEE 553


>gi|156740619|ref|YP_001430748.1| ATP-dependent DNA helicase RecG [Roseiflexus castenholzii DSM
           13941]
 gi|156231947|gb|ABU56730.1| ATP-dependent DNA helicase RecG [Roseiflexus castenholzii DSM
           13941]
          Length = 842

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 237/678 (34%), Positives = 357/678 (52%), Gaps = 54/678 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEI 101
           DLL++ P  + D   R  I+E+    + T+   +    +  ++       +L+ D TG +
Sbjct: 149 DLLYHFPHRYDDFTSRKTIAELQPGAVETVIAEVLDARTLPMKSGGSRLDVLVGDETGTL 208

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160
            ++FF  +   L   F  G K+ ++GKI        M  P +  F +   ++   +  V+
Sbjct: 209 KVVFF--RQPWLAQRFLVGTKVVLSGKIGVYDGLRQMASPEWQPFTDDDLIHVGRLVPVH 266

Query: 161 SLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
            L  GL     + +I + + R  P+L + +   + ++     + +A   IH P      E
Sbjct: 267 PLTRGLVERSARALIKQVVDRCAPMLEDHLPPAVRERTGLMPLPQAIAQIHFPDSRDMLE 326

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
               AR RL +DE L  Q+ +L  +  ++ + G  I     + +  LR +PF  T +Q  
Sbjct: 327 Q---ARRRLGFDEFLFIQLGVLQRKMIWQAQRGYAITRRDDVHEAFLRRLPFELTGAQVR 383

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI++I  DM++   M R+LQGDVGSGKT+VA  A   A+ +G QA +MAP  ILA+QHY 
Sbjct: 384 AIEEIFADMARPVPMARLLQGDVGSGKTVVAAAAALQAIASGYQAALMAPTEILAEQHYR 443

Query: 340 FIKKYTQNTQII-----------------------------------------VEIITGN 358
            ++    N  +                                          V ++TG+
Sbjct: 444 GLRALLGNVPVPRDQRQVSAEDDLDPEQRERLEEIKRILGMSGDDDLDGRGVRVALLTGS 503

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    RR+ LE IA G   +I+GTHAL  +S+QY  L L IVDEQHRFGV+QR +L  K 
Sbjct: 504 LGAKERRRVLEGIARGDIDLIVGTHALITESVQYAALGLAIVDEQHRFGVEQRQRLKDKG 563

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH+L+MTATPIPRTL LT  GD+D+S + E P GR+ IKT  I     D+    ++  
Sbjct: 564 YNPHMLVMTATPIPRTLTLTIYGDLDVSVLDELPPGRQEIKTRWITTVERDKAYRHIRRE 623

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDS 536
           +++G++A+ ICP +EE ++ +  S  E   +L         +A+IHG+M   +K++VM +
Sbjct: 624 VAKGRQAFVICPLVEESEKVDLPSAEEMHATLSRDVFPDLRVALIHGKMLPREKDAVMIA 683

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+N    +L+AT VIEVGIDV +A+ I+IE AE FGLAQLHQ RGRVGRG   S CIL+ 
Sbjct: 684 FRNHEYDILVATAVIEVGIDVPNATTILIEGAERFGLAQLHQFRGRVGRGVHQSYCILVC 743

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SL 655
               ++ +  R+  ++   DGF +AE DL  R  GE  G +QSG P   +AQ  L D  L
Sbjct: 744 DKEQNEVTRQRMEAMETISDGFRLAEIDLHLRGPGEFFGTRQSGTPDLKVAQ--LTDVRL 801

Query: 656 LEIARKDAKHILTQDPDL 673
           L+ A ++A+ IL  DP L
Sbjct: 802 LQTAYREAQKILADDPQL 819


>gi|197122525|ref|YP_002134476.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter sp. K]
 gi|196172374|gb|ACG73347.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter sp. K]
          Length = 904

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/636 (36%), Positives = 347/636 (54%), Gaps = 11/636 (1%)

Query: 49  PSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFY 107
           P ++ DR    +ISE+      T+ G +S     +++  +P  K+ + +G   + L+FF 
Sbjct: 245 PRAYQDRTALRRISELRVGDEATVLGTVSHVRIQRMRSGKPLLKVGVQEGGSALELVFFN 304

Query: 108 RKTEMLKNVFFEGRKITVTGKIKK-LKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTG 165
                LK  F  G  +  +GK+ +    R  M  P      + D  NF  I  VY  P  
Sbjct: 305 PPPWRLKQ-FAAGESLLCSGKVTEGFGARRQMSQPEVEKVQAGDSANFGRIVPVYPGPAD 363

Query: 166 LSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEW 220
                 +K++   +  L P   + +  ++  ++     AEA    H P    D     E 
Sbjct: 364 YQHPALRKLMKRLVDELVPAAVDDLPAEIRARRDLVGRAEALREAHFPPAGTDPLRAAER 423

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
            +PA  RL ++EL   Q+AL L R+  + E GI  +       + +  +PF  T +QE A
Sbjct: 424 VTPAFRRLVFEELFFLQLALALRRRGVRAEAGIAFDASPAALARAVEPLPFRLTGAQERA 483

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           + +I +DM+    M R+LQGDVGSGKT VA  AM  AV++G QA +M P  ILA+QH   
Sbjct: 484 LAEIARDMADPEPMNRLLQGDVGSGKTAVAFAAMMLAVQSGWQAALMVPTEILAEQHART 543

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           + ++ +   + V ++  +     +R+A   +A G+A I +GTHAL + ++ + +L LV+V
Sbjct: 544 LSRWLEGRGVEVALVGASARGKGQREARAAVAEGRARIAVGTHALLEQAVGFERLGLVVV 603

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQHRFGV QR  L  K   P VL+MTATPIPRTL L   GD+D SKI+E P GR P+ T
Sbjct: 604 DEQHRFGVMQRAGLISKGRRPDVLVMTATPIPRTLALAFYGDLDQSKISELPPGRTPVTT 663

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519
            +   ++        +  L  G++ Y + P +EE ++++          L + F    I 
Sbjct: 664 RLFGDSQRKAAYALARGELDAGRQVYVVYPLVEESEKTDLADATTGAADLAKVFPGHEIG 723

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           ++HGRM   +K+ VMD F+ G   +L+ATTVIEVG+DV +AS++I+E+AE FGL+QLHQL
Sbjct: 724 LLHGRMKPEEKQRVMDRFRAGEVHVLVATTVIEVGVDVPNASVMIVEHAERFGLSQLHQL 783

Query: 580 RGRVGRGEEISSCILLYH-PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           RGRVGRG   S C+LL H      ++  RL  ++ T+DGF IA  DL+ R  GE+LG +Q
Sbjct: 784 RGRVGRGAAKSHCLLLAHFRRAGDDARERLRAMEETQDGFEIARVDLRIRGPGELLGTRQ 843

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           SG     +A     +++LE AR++A  ++ +D DL 
Sbjct: 844 SGQKLLDVADLYRDEAILEEAREEAFGLVERDGDLA 879


>gi|241667284|ref|ZP_04754862.1| ATP-dependent DNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875835|ref|ZP_05248545.1| ATP-dependent DNA helicase recG [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841856|gb|EET20270.1| ATP-dependent DNA helicase recG [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 679

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/617 (35%), Positives = 355/617 (57%), Gaps = 26/617 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL   P  + D  +   IS +  ++   I G I+ + +++   ++  + ++ND TG  T
Sbjct: 27  DLLTIFPKEYKDTRFVSTISSLVTDKKYLIEGRIT-NLTYKKFGKKFLRFIVNDETGICT 85

Query: 103 LLFFYRKTEMLKNVFF---EGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEA 158
           ++ F    +   N  F       +   GK+  L     MVHP + +  +           
Sbjct: 86  IVMF----KFYPNQIFALENAEYVRCYGKVD-LSLNPQMVHPEWAVIKDGVCAIKKEFSP 140

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           VY L   +S  +  +II+  L    V  + + + LL+     S ++A   +H    + D 
Sbjct: 141 VYRLKK-VSDKVVSRIILSCLKSKSV-ADILPRQLLRGFGLMSFSDALYYVHALTDSIDD 198

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           ++ + AR  + ++E+LA ++A   +RK         +++E     +  + +P+  T++Q+
Sbjct: 199 KFINIARSSIKFEEMLAYKLAEESIRKSITNSSAPRLSLEESQQNEFYKKLPYQLTQAQQ 258

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             I +IL D+SQ + M+R+LQGDVG+GKT+VA +A+  AV++G QAV+MAP  ILA+QHY
Sbjct: 259 RTITEILADISQSSAMIRLLQGDVGAGKTIVAAMAVYTAVKSGYQAVVMAPTEILAEQHY 318

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            F   Y  +  I V  + G +     R++L  I   +  +I+GTHA+FQ+ ++Y  L LV
Sbjct: 319 SFFASYMPDLDIDVVPLLGKLTAKQTRESLAVIKSKKDCVIVGTHAVFQERVEYCNLGLV 378

Query: 399 IVDEQHRFGVQQRLKLTQKAT------APHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           +VDEQHRFGV+QRL L  K++       PH L+++ATPIPRTL +T  G++ +S + E P
Sbjct: 379 VVDEQHRFGVEQRLALINKSSLNDRHLVPHQLIISATPIPRTLAMTLYGNLQLSILDELP 438

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             RKPI T ++   +   +I ++K  +S G++ YW+CP +EE +  +F   ++   +LH+
Sbjct: 439 PNRKPIVTTVLNRAKKQSLIGKVKEAVSRGEQVYWVCPLVEESENMDF---LQDVKTLHK 495

Query: 513 HFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
               +     + +++G M   DK   M  FK    K+L+ATTVIEVG+DV +ASI+II+N
Sbjct: 496 ELAEALGKENVGLVYGSMKSKDKIQEMSDFKAKKYKVLVATTVIEVGVDVPNASIMIIDN 555

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           AE  G++QLHQLRGRVGRG + S CILLY   +S+    RLS+++ ++DGF +AE+DL+ 
Sbjct: 556 AERLGISQLHQLRGRVGRGAKESYCILLYSDRISEVGKKRLSLVRESQDGFYLAEKDLEI 615

Query: 628 RKEGEILGIKQSGMPKF 644
           R  G+ILG +QSG+  F
Sbjct: 616 RGAGDILGKEQSGVSTF 632


>gi|225010853|ref|ZP_03701321.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium MS024-3C]
 gi|225005061|gb|EEG43015.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium MS024-3C]
          Length = 701

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 241/657 (36%), Positives = 374/657 (56%), Gaps = 22/657 (3%)

Query: 41  FIDLLFYHPSSFIDRHYRPKISEISEERI-VTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           + DLL + P+ ++DR     I+++   +  V I G I+Q  +   +K         D TG
Sbjct: 33  YQDLLHFFPNRYVDRTQFHHINQLEASQAEVQIVGVITQIETITQKKGSRLVAKFLDNTG 92

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEA 158
            + L++F +  + +K          + GKI   + R  M HP   +  N Q  N   ++A
Sbjct: 93  AMELVWF-KGAKWIKESIKTNTPYVIFGKISVFQGRFNMAHPDMELLENYQANNRMGLQA 151

Query: 159 VYSLPTGLS-VDLFKKIIVEALSRL-----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
           +Y     LS  ++  + ++ A+ +L         E +   +L+       + A   IH P
Sbjct: 152 IYPSTERLSNANMGNRFMLRAMEQLFNECGSAFKETLSASILENLKLLQRSTALFHIHFP 211

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALL---LMRKQFKKEIGIPINVEGKIAQKILRN- 268
           + AK     S A  RL ++EL   Q+ L+   L+RK  KK  G+P +  G        N 
Sbjct: 212 KDAK---MLSRAAARLKFEELFFIQLQLIRKNLVRK--KKIKGLPFSDVGAYFNDFYNNQ 266

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF  T +Q+  +K+I  D+    +M R+LQGDVGSGKT+VA++A+  A++ G QA +MA
Sbjct: 267 LPFELTNAQKRVVKEIRTDVGSNAQMNRLLQGDVGSGKTIVAVMAILFALDNGFQACLMA 326

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA QH++ + +      I V ++TG++ ++ R+  LE +  G+  ++IGTHAL +D
Sbjct: 327 PTEILANQHFKGVSELLAPLGIHVALLTGSVRKSARKPLLESLEEGELKVLIGTHALLED 386

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISK 447
           ++ Y  L L I+DEQHRFGV QR KL  K T  PHVL+MTATPIPRTL ++  GD+DIS 
Sbjct: 387 NVVYKNLGLAIIDEQHRFGVAQRAKLWHKNTLPPHVLVMTATPIPRTLAMSIYGDLDISV 446

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P GRK IKTV    +    V + +K  + +G++ Y + P I E +  +++ +++ +
Sbjct: 447 IDELPPGRKEIKTVWRSDSHRLGVFKFIKEEILKGRQVYIVYPLINESEVLDYKDLMDGY 506

Query: 508 NSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +S+   F +    ++I+HG+M    K   M+ F  G  ++++ATTVIEVG++V +AS++I
Sbjct: 507 DSISRSFPAPEFQVSIVHGQMKADAKAYEMERFVKGETQIMVATTVIEVGVNVPNASVMI 566

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           IE+AE FGL+QLHQLRGRVGRG E S CIL+    +S+   TRL  +  + DGF IAE D
Sbjct: 567 IESAERFGLSQLHQLRGRVGRGAEQSFCILMSGNKVSQEGKTRLETMVASSDGFEIAEVD 626

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           LK R  G+++G +QSG+ +  IA      +LL+ AR+ A  +L  DP L S+  + I
Sbjct: 627 LKLRGPGDLMGTQQSGVLQLKIADIVKDAALLKKAREVAVTVLKSDPSLDSIENKPI 683


>gi|299148213|ref|ZP_07041275.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_23]
 gi|298512974|gb|EFI36861.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_23]
          Length = 698

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 243/681 (35%), Positives = 368/681 (54%), Gaps = 43/681 (6%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   + +     DL++Y P  +IDR     I EI      + + G I
Sbjct: 14  GVGPQKAAVLNKELEIYSLH-----DLIYYFPYKYIDRSRIYYIHEIDGNMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F     +L         I + GK      RI
Sbjct: 69  LGFETIGEGRQRRLTAHFSDGTGVVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP     +   ++   ++  YS    +         +E +    +      LPE + 
Sbjct: 128 NVAHPDVDKPDDLKLSSVGLQPYYSTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP-----ARERLAYDELLAGQIALLLMRK 245
             LL +     + EA   IH P        T+P     A+ RL ++EL   Q+ +L   K
Sbjct: 188 PKLLAEHHLMPLTEALRNIHFP--------TNPDVLRRAQYRLKFEELFYVQLNILRYAK 239

Query: 246 QFKKEIGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
             +K         G I +K+         +N+PF  T +Q+  +K+I  D+    +M R+
Sbjct: 240 DRQKR------YRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRL 293

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++TG
Sbjct: 294 LQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTG 353

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++    R   L  +  G   I+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L  K
Sbjct: 354 SIKGKRREAILAGLLTGDVQILIGTHAVVEDTVNFSSLGFVVIDEQHRFGVAQRARLWSK 413

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   ++
Sbjct: 414 NVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRSVR 473

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMD 535
             + EG++ Y + P I+E ++ + +++ E +  + E F   ++  +HG+M   +K+  M 
Sbjct: 474 KQIDEGRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPKCTVCKVHGKMKPAEKDEQMQ 533

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+
Sbjct: 534 LFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILV 593

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDS 654
            +  L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       
Sbjct: 594 TNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRDGQ 653

Query: 655 LLEIARKDAKHILTQDPDLTS 675
           LL+  R  A+ I+ QDP   S
Sbjct: 654 LLQYVRAIAESIVEQDPAAQS 674


>gi|237714387|ref|ZP_04544868.1| ATP-dependent DNA helicase recG [Bacteroides sp. D1]
 gi|262408219|ref|ZP_06084766.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_22]
 gi|294646288|ref|ZP_06723940.1| ATP-dependent DNA helicase RecG [Bacteroides ovatus SD CC 2a]
 gi|294806775|ref|ZP_06765602.1| ATP-dependent DNA helicase RecG [Bacteroides xylanisolvens SD CC
           1b]
 gi|229445551|gb|EEO51342.1| ATP-dependent DNA helicase recG [Bacteroides sp. D1]
 gi|262353771|gb|EEZ02864.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_22]
 gi|292638369|gb|EFF56735.1| ATP-dependent DNA helicase RecG [Bacteroides ovatus SD CC 2a]
 gi|294446057|gb|EFG14697.1| ATP-dependent DNA helicase RecG [Bacteroides xylanisolvens SD CC
           1b]
          Length = 698

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 243/681 (35%), Positives = 368/681 (54%), Gaps = 43/681 (6%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   + +     DL++Y P  +IDR     I EI      + + G I
Sbjct: 14  GVGPQKAAVLNKELEIYSLH-----DLIYYFPYKYIDRSRIYYIHEIDGNMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F     +L         I + GK      RI
Sbjct: 69  LGFETIGEGRQRRLTAHFSDGTGVVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP     +   ++   ++  YS    +         +E +    +      LPE + 
Sbjct: 128 NVAHPDVDKPDDLKLSSVGLQPYYSTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP-----ARERLAYDELLAGQIALLLMRK 245
             LL +     + EA   IH P        T+P     A+ RL ++EL   Q+ +L   K
Sbjct: 188 PKLLTEHHLMPLTEALRNIHFP--------TNPDVLRRAQYRLKFEELFYVQLNILRYAK 239

Query: 246 QFKKEIGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
             +K         G I +K+         +N+PF  T +Q+  +K+I  D+    +M R+
Sbjct: 240 DRQKR------YRGYIFEKVGDVFNTFYAKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRL 293

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++TG
Sbjct: 294 LQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTG 353

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++    R   L  +  G   I+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L  K
Sbjct: 354 SIKGKRREAILAGLLTGDVQILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSK 413

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   ++
Sbjct: 414 NVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRSVR 473

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMD 535
             + EG++ Y + P I+E ++ + +++ E +  + E F   ++  +HG+M   +K+  M 
Sbjct: 474 KQIDEGRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPKCTVCKVHGKMKPAEKDEQMQ 533

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+
Sbjct: 534 LFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILV 593

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDS 654
            +  L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       
Sbjct: 594 TNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRDGQ 653

Query: 655 LLEIARKDAKHILTQDPDLTS 675
           LL+  R  A+ I+ QDP   S
Sbjct: 654 LLQYVRAIAESIVEQDPAAQS 674


>gi|241895658|ref|ZP_04782954.1| ATP-dependent DNA helicase RecG [Weissella paramesenteroides ATCC
           33313]
 gi|241871025|gb|EER74776.1| ATP-dependent DNA helicase RecG [Weissella paramesenteroides ATCC
           33313]
          Length = 678

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 233/680 (34%), Positives = 384/680 (56%), Gaps = 38/680 (5%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           PS L+ +    S   GVG K    L+K+            DLL Y+P  + D   +    
Sbjct: 2   PSLLDSI----SELSGVGPKREQALNKL------GVFTIDDLLTYYPRRYNDLAQKLPSE 51

Query: 63  EISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            +  E+ VT  G ++     S    +K R  +++ ++  T +I+   F+ +  + KN+  
Sbjct: 52  TLDGEK-VTFKGLVTSPPVVSRLGFKKTRLNFRLTVSHDTIQIS---FFNQPWLSKNIVV 107

Query: 119 EGRKITVTGKIKKLKNRI--IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
            G ++ + G   K    +  I + P    +N  +     +EA+Y     +     K +I 
Sbjct: 108 -GEEVAIYGTYNKAHQSLSAIKMMPK---NNENE-----LEAIYPSSKEIKAGTIKDLIF 158

Query: 177 EALSRLPVL--PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           +AL +   L   E I  D+ ++    +  +    +H P    +F     AR   ++ E  
Sbjct: 159 QALGKYGDLLTQEIIPSDIRRRYRLMNYHDTVFGMHAPEN--EF-LAGEARRTASFMEFF 215

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
             Q+ L ++++  +   G  +N + +  +  ++ +PF  T +Q+  + +I++DM +   M
Sbjct: 216 VFQMRLQVIKQMDRHNQGRSVNFDNQQLKSFIKVLPFELTAAQKKVVNEIVRDMRRPVHM 275

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVGSGKT+VA +AM AA+ AG QA +MAP  ILAQQH   I  Y   +++ VEI
Sbjct: 276 NRLLQGDVGSGKTVVAALAMYAAITAGMQATLMAPTEILAQQHARTIGNYFDPSEVRVEI 335

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG    A RR+ L  +A G   I+IGTHAL Q  I ++ L L ++DEQHRFGVQQR  L
Sbjct: 336 LTGTTKAAARRQILADLAEGDIDILIGTHALIQPDIAFHNLGLAVIDEQHRFGVQQRATL 395

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    P +L MTATPIPRTL +T+ G++D+S I + PAGRK IKT  +  N+I + I+ 
Sbjct: 396 RKVGVNPDILAMTATPIPRTLAITAYGEMDVSIIDQLPAGRKKIKTYWLRHNKIAKAIQF 455

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKES 532
           +K  L+ G +AY + P IEE +  + ++    +  L  +F    ++ ++HGR+S+ +K++
Sbjct: 456 VKEQLASGAQAYVVTPLIEESETLDVQNAQAVYEELSTYFAPKFNVGLLHGRLSNDEKDT 515

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM +FK    ++L+ATTVIEVG+DV +A++++I +A+ FGL+QLHQLRGRVGRGE  +  
Sbjct: 516 VMTAFKANEFQVLVATTVIEVGVDVPNATVMLILDADRFGLSQLHQLRGRVGRGERQAYT 575

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            L+  P  ++    R+  +  T DGF++A++DL+ R  G++LG +QSG+P+F +  P   
Sbjct: 576 FLVSDPK-TQYGIDRMEAMVETTDGFVLAQKDLELRGAGDVLGNRQSGVPEFRVGDPIAD 634

Query: 653 DSLLEIARKDAKHILTQDPD 672
            +++ +A+++A  I++Q PD
Sbjct: 635 LAMMNVAQEEAIEIVSQ-PD 653


>gi|332654548|ref|ZP_08420291.1| ATP-dependent DNA helicase RecG [Ruminococcaceae bacterium D16]
 gi|332516512|gb|EGJ46118.1| ATP-dependent DNA helicase RecG [Ruminococcaceae bacterium D16]
          Length = 694

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 230/687 (33%), Positives = 367/687 (53%), Gaps = 41/687 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+ F GVG   S  L K+        TR  DL+ Y P  + DR    KI  I    
Sbjct: 5   LNTPLTDFPGVGPARSAKLEKL------GLTRVRDLMTYFPRDYEDRR---KIWSIRSAP 55

Query: 69  I---VTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           +   V +    ++H      ++     K+   D  G + + FF      ++     G + 
Sbjct: 56  LGVKVCVQAMAAEHPRLSRIRKGMELVKVKAVDHAGALHITFF--NQSYVERAIQAGEEY 113

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII---VEALS 180
              G +++  +R  MV+P +   + Q V    I  VY L  G+S  L   +I   VEA +
Sbjct: 114 VFWGVVEEQGSRRTMVNPIFERTDRQAVTG-CILPVYPLTAGISNHLLCSLIRPAVEACA 172

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
               +PE + + +  +        +F  IH P   +  +    AR RL ++EL      L
Sbjct: 173 SQ--MPESLPRSVRLEHELAQTEFSFRNIHFPDSPESLDL---ARRRLTFEELFYLSTGL 227

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            +++ +     G    V  +  ++ L  +PF PT++Q   + ++  D+S    M R++QG
Sbjct: 228 AMLKHRRGDAAGR--VVPSRPLEEFLSLLPFPPTQAQRRVMGEVAADLSSGRSMNRLVQG 285

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA      A ++G Q  +MAP  +LAQQH   +    +   + V ++TG+  
Sbjct: 286 DVGSGKTVVAAWGAYLAAKSGMQTALMAPTEVLAQQHARSLSALLEPAGVRVGLLTGSFT 345

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            A +++  + IA G   +++GTHAL    ++++ L L++ DEQHRFGV QR  L  K  A
Sbjct: 346 PAQKKRLRQAIAQGDVDLVVGTHALISQDVEFHDLGLMVADEQHRFGVAQRSALAAKGHA 405

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PHVL+M+ATPIPRTL L   GD+D+S I + P GR P++T ++  ++   +   ++ ++ 
Sbjct: 406 PHVLVMSATPIPRTLALIIYGDLDVSVIDQLPPGRTPVETYVVHEDKRQRMYNFVRKLVG 465

Query: 481 EGKKAYWICPQIEEK-KESNFRSVVERFNSLH------EHFTSSI------AIIHGRMSD 527
           EG++AY ICP +E++  E N       F  L       +H    +      A++HG+M  
Sbjct: 466 EGRQAYIICPAVEDRTAEDNPDGDPSPFADLKAVKSYAQHLQDEVFPDLRLALLHGKMRP 525

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K++VM +F  G   +L++TTV+EVG+DV +A++II+ENAE FGL+QLHQLRGRVGRG+
Sbjct: 526 REKDAVMAAFAAGDVDVLVSTTVVEVGVDVPNAALIIVENAERFGLSQLHQLRGRVGRGK 585

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C+L+ +   ++++ TRL  L +T DGF I+EEDLK R  G+  G +Q G+P+  +A
Sbjct: 586 HQSYCVLITN-SHAQDAMTRLKTLASTTDGFKISEEDLKLRGPGDFFGSRQHGLPQLALA 644

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLT 674
                  LL+ A++ A+ +L  DP L+
Sbjct: 645 DLSGDMRLLQQAQQSARQLLQNDPTLS 671


>gi|170730951|ref|YP_001776384.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa M12]
 gi|167965744|gb|ACA12754.1| ATP-dependent DNA helicase [Xylella fastidiosa M12]
          Length = 718

 Score =  369 bits (947), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 237/658 (36%), Positives = 365/658 (55%), Gaps = 43/658 (6%)

Query: 52  FIDRHYRPKISEISEERIVTITGYI-SQHSSFQLQKRRPY-KILLNDGTGEI-TLLFFYR 108
           + DR     I+E+ +   V I   + +   SF   + RP  +++L+D    I T+ FF+ 
Sbjct: 52  YEDRTRLTPIAELQDGVAVQIEARVEAVERSF---RYRPLLRVVLSDDAHHILTMRFFHF 108

Query: 109 KTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGL 166
           +   +   F  G ++   G  K  +    +VHP Y I    + V+    ++ VY +  G+
Sbjct: 109 RAAQIAR-FTVGTRVRAYGVPKLGQYGWEIVHPSYRILAPGEAVSLNDCLDPVYPVIDGV 167

Query: 167 SVDLFKKIIVEALSRLP------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE- 219
              + +++I EAL  LP      +LP+    DL      P++  A  I+H P    D   
Sbjct: 168 GPAIVRQLIREALEHLPTDAVLELLPDVWLSDL----GLPTLRTALLIMHRPPLDADIAR 223

Query: 220 ---WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
               T PA++RL+ +ELLA Q++L   R   ++     +     +   +L  +PF  T +
Sbjct: 224 LMVGTHPAQQRLSLEELLAHQLSLRRQRIALQRHSAPALPDGAALVASLLHALPFHLTAA 283

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+     I  D+++   MLR++QGDVGSGKT+VA +A   AVE   Q  + AP  +LA+Q
Sbjct: 284 QQRVFAQIAADVAKPVPMLRLVQGDVGSGKTVVAALAALLAVEQNKQVALAAPTALLAEQ 343

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+  ++ + +   + V  +   +    R +AL  +A G A +++GTHAL Q+S+ ++ L 
Sbjct: 344 HFINLRDWLEPLGVRVHWLAAKVTGKARLQALNDVASGDAQVVVGTHALMQESVVFHDLA 403

Query: 397 LVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           L IVDEQHRFGV QRL L  K       PH L+MTATPIPRTL + +  D+D+S I E P
Sbjct: 404 LTIVDEQHRFGVHQRLLLRDKGAIAGIVPHQLVMTATPIPRTLAMAAYADLDVSVIDEMP 463

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--------ESN---FR 501
            GR P++T ++   R  E++ER+++  ++G++ YW+C  I+E +         SN    R
Sbjct: 464 PGRTPVQTNVLSAERRPELVERIRLACAQGRQVYWVCTLIDESQTEAEQAPPSSNDIGHR 523

Query: 502 SVVERFNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           S V+   + +E  ++      + ++HGRM   +K+  M +FK     +L+ATTVIEVG+D
Sbjct: 524 SEVQAAQATYEALSAQLPGVRVGLVHGRMKAAEKQRTMRAFKYNEIDVLVATTVIEVGVD 583

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +AS++IIENAE  GLAQLHQLRGRVGRG  +SSC+LLY PPLS  +  RL +++ T D
Sbjct: 584 VPNASLMIIENAERLGLAQLHQLRGRVGRGSVVSSCVLLYQPPLSMLARQRLQIMRQTND 643

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           GF IAE+DL+ R  GE+LG +Q+G+  F +A       LL      A  +L + P L 
Sbjct: 644 GFAIAEKDLELRGPGELLGTRQTGLAAFRVADLARDAHLLPRVYSLANVLLDESPQLA 701


>gi|170758229|ref|YP_001787810.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405218|gb|ACA53629.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 679

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 247/681 (36%), Positives = 388/681 (56%), Gaps = 44/681 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66
           +++P++T +GVG K    L K   C   N    +DLL Y P    FID + + K+  +S+
Sbjct: 3   VYSPITTLKGVGPKTKEQLEK---CMIFN---IMDLLLYFPRDYEFIDNYSKDKL--LSK 54

Query: 67  ERIVTITGYISQHSSFQLQKR-RPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + I+ +     Q  + +   R R  KIL     NDG   I   +F +    +KN F  G 
Sbjct: 55  KVIIKV-----QVENIKRDLRTRTGKILTTIIFNDGEKAIVGSWFNQP--YIKNYFKIGE 107

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           +  + G +K+ +  + + +   I  N  +++V    I   Y L   L+ +L  K++   L
Sbjct: 108 EYVLQGSLKEYRGNLTINNAQ-ILKNKYTEEVGERNIIPKYPLKGDLNNNLLIKLVDSVL 166

Query: 180 SRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           + + +   LP W    L++K  F S+ ++   IH P   K+ E    +  RL + ELLA 
Sbjct: 167 TNIDIGENLPRW----LIEKYKFLSLDKSIRTIHKPENQKELE---ESIRRLKFQELLAY 219

Query: 237 QIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            + +  +++  +    GI   V  +I   ++  +PF  T +Q   +++I +D  ++  M 
Sbjct: 220 CLKIAFLKEYLETATKGISFIVSEEI-NNLIEALPFKLTNAQNKVLQEIFKDQKREKPMN 278

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT++ALI++   +  G Q V++AP  ILA QHYE   K  ++  + +E++
Sbjct: 279 RLLQGDVGSGKTIIALISLFNVIRNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELL 338

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
            G++  + +++  E++  G+  +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+ 
Sbjct: 339 VGSIKVSSKKEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKML 398

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K  +   L+M+ATPIPR+L L+  GD+D+S I E P GR+ I T  +  +    V    
Sbjct: 399 NKGKSVDTLVMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFA 458

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESV 533
              ++ G++ Y +CP +EEK+E N  SV + ++ L  E+F    IAI+HG+M   +K+++
Sbjct: 459 LKEINNGRQVYIVCPLVEEKEELNLNSVEKLYDDLKGEYFKEVEIAILHGKMKGKEKDNI 518

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FK G  K LI+TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG+  S CI
Sbjct: 519 MKDFKEGKIKALISTTVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGKHKSYCI 578

Query: 594 LLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           L+      KN     R+ ++K++ DGFL+AEEDLK R  GEI G KQ G    L+A    
Sbjct: 579 LIAR---VKNDIIRKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIE 635

Query: 652 HDSLLEIARKDAKHILTQDPD 672
              LL IA  ++K I+  + +
Sbjct: 636 DIHLLRIANTESKKIIDSNNE 656


>gi|255281781|ref|ZP_05346336.1| ATP-dependent DNA helicase RecG [Bryantella formatexigens DSM
           14469]
 gi|255267848|gb|EET61053.1| ATP-dependent DNA helicase RecG [Bryantella formatexigens DSM
           14469]
          Length = 685

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 236/691 (34%), Positives = 372/691 (53%), Gaps = 27/691 (3%)

Query: 12  PLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKI---SEISE 66
           PL   +G+G+K  L   K  I N G        DLL Y+P ++  R + P+I   S++ E
Sbjct: 6   PLDELKGIGEKTKLVFEKAGIRNLG--------DLLSYYPRTY--RRF-PEITDTSQVKE 54

Query: 67  ERIVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
            R + I     +  + Q  KR +    +L D  G I + ++      L+N    G     
Sbjct: 55  GREIAIYAAPERTLTVQYVKRMQIVSAVLCDKAGAIGVRWY--NMPYLRNTIKPGGYHVF 112

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            G+I +    + +  P              ++ VY L  GL+  L  K + +AL  + + 
Sbjct: 113 CGRIVQKGANLFLEQPAIYTPEQYQKLLAELQPVYVLTKGLTNQLVSKTVRQALDGMELS 172

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            +++ +D+ ++        A   IH P   +D +    AR RL +DE     +AL   ++
Sbjct: 173 GDYLPEDIRRRYQLADYRNAIEEIHFP---QDEQHMKIARRRLVFDEFFLFILALRQFKE 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           Q ++           +   ++RN+ +  T +Q+   +DI +DM+ +    R++QGDVGSG
Sbjct: 230 QHEQAKNPYTIRRTPLTDTVIRNLGYELTGAQQRVWEDIQRDMTGEKVAARLIQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY--TQNTQIIVEIITGNMPQAH 363
           KT++A +AM  A E G Q+ +M P  +LA+QH++ + +    Q+ +    ++TG+M    
Sbjct: 290 KTILAFLAMILAAENGLQSALMVPTEVLARQHFDSMTELIEAQHLRFCPVLLTGSMTARE 349

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R A E+IA G+A +IIGTHAL Q+ +QY ++ LVI DEQHRFGV+QR  L +K   PH 
Sbjct: 350 KRVACEKIASGEADMIIGTHALIQEKVQYKRMGLVITDEQHRFGVRQRELLGEKGAEPHT 409

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL +   GD++IS I E P  R PIK  ++      +    ++  +  G 
Sbjct: 410 LVMSATPIPRTLAVILYGDLEISVIDELPKSRLPIKNCVVNTTYRKKAYHFIEKEIRLGH 469

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGT 541
           +AY ICP +EE ++     V+     L E     I I  +HG+M   +K  VM+ F  G 
Sbjct: 470 QAYIICPMVEENEQIEAEDVISYTERLREVMPEDIRIEYLHGKMKPKEKNEVMERFLCGD 529

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CI++     +
Sbjct: 530 IQVLVSTTVVEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGKAQSYCIMISSTD-N 588

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + +  RL +L ++ DGF IA EDLK R  G+ILG++QSG+ +F +A       +L+ A +
Sbjct: 589 EKTRKRLEILNHSNDGFFIASEDLKLRGPGDILGVRQSGLMEFKLADVFADAKILQNACE 648

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            A  IL  D  L +     +   L  Y  NE
Sbjct: 649 AADVILKHDSALQAPENAELHNKLENYLSNE 679


>gi|253578691|ref|ZP_04855962.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849634|gb|EES77593.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 684

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 236/689 (34%), Positives = 386/689 (56%), Gaps = 32/689 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERIVT 71
           L T +GVG+K     +KI        T    LL Y+P ++ D +  P +I  + E  +V 
Sbjct: 5   LRTLKGVGEKTEKLFAKI------GVTDMESLLSYYPRNY-DAYEEPVEIRSLEEGAVVA 57

Query: 72  I-----TG-YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           I     TG Y++Q  + Q+         + D TG+I++ +F      L++   +G +  +
Sbjct: 58  ISVAVITGVYVNQVRNLQV-----ITTTVADLTGKISVTWF--NAPYLRSAVRKGSRFVL 110

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            G++ + + ++ M HP      + +     ++ +Y L  GLS     K+I + L    + 
Sbjct: 111 RGRVVRKQGKLQMEHPEIFTPAAYEEILHSLQPIYGLTAGLSNKTIVKLIHQVLDEQKLQ 170

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E++  +  ++        A   IH P   K+ +    AR RL +DE L   +A+  +++
Sbjct: 171 TEYLADEYKERYHLADRNFAIPAIHFP---KNMQELLAARRRLVFDEFLLFILAVQSLKE 227

Query: 246 QFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           + ++     P++      Q I+ ++P+  TK+Q +   +I +D+S +  M R++QGDVGS
Sbjct: 228 KTEEAPNAFPMHPVWTTEQ-IIESLPYDLTKAQLNVWHEIERDLSGQALMSRLVQGDVGS 286

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE---IITGNMPQ 361
           GKT++A +AM   VE G QAV+MAP  +LA+QH++ ++K  Q   I      ++TG+   
Sbjct: 287 GKTILAFLAMIMTVENGYQAVLMAPTEVLARQHFQAMEKLLQEQNIDFGHPVLLTGSDTA 346

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +R+    IA  +A+++IGTHAL Q+ +QY  L LVI DEQHRFGV+QR  LT     P
Sbjct: 347 KEKREKYVLIASKEANLVIGTHALIQEKVQYNNLGLVITDEQHRFGVKQREALTTMGNPP 406

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           +VL+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++  +   +    ++  + +
Sbjct: 407 NVLVMSATPIPRTLAIIIYGDLDISVIDELPAQRLPIKNCVVDTSYRPKAYSFMEKQIRQ 466

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKN 539
           G++ Y ICP +EE +  +  +V++    L   F+  I I  +HG+M   +K  +M++F  
Sbjct: 467 GRQVYVICPMVEESEGMDGENVLDYTLKLRNVFSPDIKIASLHGKMKAKEKNVIMEAFAA 526

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L++TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE  S CI +    
Sbjct: 527 GEIQILVSTTVVEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEYQSYCIFM-QGN 585

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +K    RL +L  + DGF IA EDLK R  G++ GI+QSG+ +F +        +L+ A
Sbjct: 586 GAKEISKRLQILNKSNDGFYIAGEDLKLRGPGDLFGIRQSGLLEFKLGDIYQDADILKAA 645

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLY 688
            + A  IL+ D DL+  + + ++  L  Y
Sbjct: 646 SETASEILSLDGDLSLPQNEELQRRLSAY 674


>gi|257467948|ref|ZP_05632044.1| ATP-dependent DNA helicase recG [Fusobacterium ulcerans ATCC 49185]
 gi|317062234|ref|ZP_07926719.1| ATP-dependent DNA helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313687910|gb|EFS24745.1| ATP-dependent DNA helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 686

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 224/605 (37%), Positives = 354/605 (58%), Gaps = 14/605 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEI-SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           DL +Y P ++ DR    KI ++  +E +V     ++  +       +  K    D TG +
Sbjct: 39  DLFYYFPRAYDDRTNIMKIGDLRGDEYVVLKATLLTVSAPPTRSGLKMVKATATDNTGIL 98

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160
            L++F  +   L+     G +    G+IK+      +V+P + +  N Q +    I  +Y
Sbjct: 99  ELVWF--QMPYLRKTLKIGEEYIFIGQIKR-GYVYQLVNPEFKLSSNQQKLEAGEILPIY 155

Query: 161 SLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           S    +  +  +K++ EA+ S+L +  E I +++L+K        A   IH P  +K+ E
Sbjct: 156 STSKEIPQNTLRKLMKEAMKSKLYIFQENIPEEILKKYKVMDRERAMKEIHFPSNSKNLE 215

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK--IAQKILRNIPFSPTKSQ 277
               A+ R A +ELL  ++ +L  R +   +      +E K  + ++ L N+ FS TK+Q
Sbjct: 216 ---EAKRRFAIEELLVLEMGILQKRFEMDSQNTSKYELEDKKTLVKQYLENLTFSLTKAQ 272

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +  I +I +D+S    + R++QGDVGSGKT+V+++ +   VE   Q V+MAP  ILA QH
Sbjct: 273 KKVITEIYRDLSNGRIINRLIQGDVGSGKTIVSMVLLLYMVENSYQGVLMAPTEILAVQH 332

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y  +K   +   + VE++TG+     ++K L+ I  G+  I+IGTHAL ++++++ +L L
Sbjct: 333 YLSVKDKFEKLGVRVELLTGSFKGKAKQKLLDSIKEGEVDIVIGTHALIEENVEFERLGL 392

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DEQHRFGV QR  L  K    ++++M+ATPIPR+L L+  GD+D+S I E P GRKP
Sbjct: 393 IIIDEQHRFGVVQRKLLRDKGVLANLVVMSATPIPRSLALSIYGDLDVSVIDELPPGRKP 452

Query: 458 IKT-VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           IKT  I  I+    + E +   LS+G++AY++ P IEE ++   +S  E    + ++   
Sbjct: 453 IKTKWIATIDETKTMYEFIGKKLSQGRQAYFVAPLIEESEKLAAKSTEELLEEVSKYLPD 512

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             I ++HGRM + +K+ VM  FKN    ++++TTVIEVG+DV +A++++I NAE FGL+ 
Sbjct: 513 YRIGVLHGRMKNAEKDEVMSRFKNKELDIMVSTTVIEVGVDVPNATVMVINNAERFGLSA 572

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRGE  S C L+     +  S +RL V++ T+DGF IAEEDLK RK GEI G
Sbjct: 573 LHQLRGRVGRGEYQSYCFLVSRTD-NAVSKSRLQVMEETQDGFKIAEEDLKLRKSGEIFG 631

Query: 636 IKQSG 640
            KQSG
Sbjct: 632 TKQSG 636


>gi|163782095|ref|ZP_02177094.1| ATP-dependent DNA helicase RecG [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882627|gb|EDP76132.1| ATP-dependent DNA helicase RecG [Hydrogenivirga sp. 128-5-R1-1]
          Length = 670

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 230/632 (36%), Positives = 359/632 (56%), Gaps = 30/632 (4%)

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFH 146
           R   +++  DG  E+ L F ++K + +  ++ +G  + V GK+K       +VHP  +  
Sbjct: 43  RYTVEVVCTDGNDEVKLKFRFKKNDFVFALYRKGSDVVVQGKLKSFNREKYIVHPELLKA 102

Query: 147 NSQDVNFPLIEA-VYSLPTGLSVDLFKKIIVEALSRL-----PVLPEWIEKDLLQKKSFP 200
                 FP+         T +S    +  I  AL +      P LPE++ + L +K  FP
Sbjct: 103 GEYGEIFPIYYVRTKGEVTSISSKTRQNRIRNALRKTVQKTAPYLPEYLPESLRRKYGFP 162

Query: 201 SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKE----IG 252
            + E   ++H P K  D +    ++ P   R  YD+L   Q++LLL +K+ + E    I 
Sbjct: 163 EVDETVELLHIP-KGVDLKSLNSFSDPYHRRAIYDDLFLFQLSLLLKKKETELENSPKIE 221

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           +P++   +   +    + F  T +Q   +++IL DM +++ M R+LQGDVGSGKT+VA+ 
Sbjct: 222 VPVD---RFIAEFQSKLSFKLTGAQLRVLREILTDMGREHPMNRLLQGDVGSGKTVVAIG 278

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           A  AAV+ G Q  +M P  ILA QHY   K++ +   + V ++TG++  + ++ A   I 
Sbjct: 279 AALAAVKKGYQVAVMVPTEILAHQHYRKFKEFFEKEGVEVGLLTGSLTPSQKKSAYRHIK 338

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATP 430
            G   +++GTHAL Q+ +++ +L LV++DEQHRFGV QR  L +K     PH L+M+ATP
Sbjct: 339 EGNIKVVVGTHALIQERLEFNRLGLVVIDEQHRFGVMQRKLLLEKGGGLYPHCLVMSATP 398

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL L+  GD+DIS I E P GRK ++T+++  +  D++++ +   LS G K Y I P
Sbjct: 399 IPRTLALSVYGDLDISVIDELPPGRKEVRTLLLYESERDKLLQAINRELSLGNKVYVIYP 458

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            IEE      ++  E +          ++ ++HGRMSD +K+ VM+ FK     +L++TT
Sbjct: 459 LIEESDRVELKAATEEYEKWKSLLPDRNVLLLHGRMSDGEKQEVMERFKE-EGDVLVSTT 517

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYT 606
           VIEVGIDV +A++++IE+A  FGL+QLHQLRGRVGR +  S C L+    L +   ++  
Sbjct: 518 VIEVGIDVPEATLMVIEDAHRFGLSQLHQLRGRVGRSDRPSYCYLVVPDDLKRGDIDALK 577

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ-PELHD-SLLEIARKDAK 664
           RL VL  T DGF +AE D+K R  GE+LG+ QSG   F +A     HD ++L+ AR+DA+
Sbjct: 578 RLKVLVRTNDGFEVAEMDMKLRGPGELLGVSQSGYFGFNVANLARSHDRAVLQNAREDAQ 637

Query: 665 HILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
            +L +DP L    G      L LY+Y +    
Sbjct: 638 SLLEEDPRLD---GHPDLKELLLYRYGDKLDL 666


>gi|229061458|ref|ZP_04198803.1| ATP-dependent DNA helicase recG [Bacillus cereus AH603]
 gi|228717881|gb|EEL69529.1| ATP-dependent DNA helicase recG [Bacillus cereus AH603]
          Length = 682

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 236/675 (34%), Positives = 379/675 (56%), Gaps = 57/675 (8%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++     ++      LL + P  + D +    ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEMGIYTVSH------LLEHFPYRYED-YAMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRP--YYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNF-PLI-----EAVYSLPTGLSVDLFKKIIVEAL---- 179
            + +  I +           ++NF P++     E VYS+   L+V   ++ + +A     
Sbjct: 119 DQHRQTIAV----------SELNFGPVVRQQEVEPVYSVKGKLTVKQMRRFVAQAFKEYG 168

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
            S + VLP+     LL +    S  EA   +H P   +D +    AR R  Y+E    Q+
Sbjct: 169 DSIVEVLPD----GLLSRYKLLSRYEALRGLHFPVGQEDLK---QARRRFVYEEFFLFQL 221

Query: 239 ALLLMRKQ-------FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            +  +RK         KKEI +   VE    Q+    +PF  T +Q   + +I++DM   
Sbjct: 222 KMQTLRKMERENSKGTKKEISL---VE---LQEFTDALPFPLTGAQRRVVDEIMKDMISP 275

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            RM R+LQGDVGSGKT+VA IA+ AA  A  Q  +M P  ILA+QHY+ + +   +  + 
Sbjct: 276 YRMNRLLQGDVGSGKTVVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMK 335

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++T ++  A RR+ L  +  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR
Sbjct: 336 VELLTSSVKGARRREILSTLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQR 395

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             L +K  +P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V
Sbjct: 396 RVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRV 455

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDID 529
           +  ++  + +G++AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +
Sbjct: 456 LGFVEKEIKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQE 515

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE +M  F     ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E 
Sbjct: 516 KEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQ 575

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+  P  S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A  
Sbjct: 576 SYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM 634

Query: 650 ELHD-SLLEIARKDA 663
            +HD   LE AR+DA
Sbjct: 635 -VHDYRALETARQDA 648


>gi|226355891|ref|YP_002785631.1| ATP-dependent DNA helicase RecG [Deinococcus deserti VCD115]
 gi|226317881|gb|ACO45877.1| putative ATP-dependent DNA helicase RecG [Deinococcus deserti
           VCD115]
          Length = 780

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 232/665 (34%), Positives = 361/665 (54%), Gaps = 25/665 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL-------N 95
           D+L  +P    DR   P ++E+ E + VT+ G +   S     +R P   +L        
Sbjct: 130 DVLHAYPHRHEDRRALPDLAEVEEGQKVTVEGTVVAKS-----RRSPRPGMLVIEVTLET 184

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD-VNF 153
              G +   +F +    ++    EG ++ +TG++K+    + +   H      +QD ++ 
Sbjct: 185 PSGGRVKATWFNQP--WVERQLREGARLVLTGRVKRFGRNVQLGVEHLETVDGAQDSLST 242

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
             I  VY    G+S +  ++    +L  +P L +++     QK     +++A   IH P 
Sbjct: 243 GRIVGVYDSKEGISQEFLRRAAFRSLQSVP-LDDYLPAHWRQKYGITDLSDALWGIHFP- 300

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
              D    S A  RL +DE L  ++ +LL  +    + G      G   ++    +PF  
Sbjct: 301 --ADEAQLSRANARLRFDEYLFLELRMLLQGEDAVLQ-GKRFEARGDDIERFESVLPFRM 357

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q   + +I  DM  + +M R++QGDVGSGKT VA  A+  AV  G Q  +MAP  IL
Sbjct: 358 TNAQRRVLLEITDDMRSERQMARLVQGDVGSGKTAVAACALYLAVRDGYQGALMAPTEIL 417

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QHY  +  Y     + V ++ G M    + +   RIA G+  +++GT AL Q+++Q+ 
Sbjct: 418 ARQHYNNLVGYLNQLDVRVGLLIGAMAAKQKLEMQTRIARGEVDVVVGTQALIQENVQFD 477

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L ++DE+HRFGVQQR KL   A  P VL+M+ATPIPR+L LT+ GD+++S I E P 
Sbjct: 478 NLGLAVIDEEHRFGVQQRRKLL--AGRPDVLVMSATPIPRSLALTAYGDLELSVIDEMPP 535

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GR PI+T +I      +    +   + EG++A+ +   I+E +     +  +  + L   
Sbjct: 536 GRTPIETKLIQDTHRTQAYGFVMRQIREGRQAFVVTALIDENENLELLAATQLADDLKTI 595

Query: 514 FTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + I ++HGRMS  +K+ VM+ F+     LL++TTVIEVG+DV +A++++IENAE FG
Sbjct: 596 LPEARIDLLHGRMSAAEKDHVMERFRAREFDLLVSTTVIEVGVDVPNATVMVIENAERFG 655

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LAQLHQLRGRVGRG   S C+L+     SK +  RL +++ + DGF+IAE DLK R  GE
Sbjct: 656 LAQLHQLRGRVGRGSAQSYCVLIAGEH-SKKTRQRLGIIEGSTDGFVIAEADLKLRGPGE 714

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           I G +QSG+P   +A      S++E AR+ AKHIL  DP L   R Q +R  L    ++ 
Sbjct: 715 IRGTRQSGIPDLRLADLANDTSIIEQARELAKHILAHDPRLEHPRLQYLRAELQSRSHSV 774

Query: 693 AFQFI 697
           AF+ +
Sbjct: 775 AFREV 779


>gi|302874760|ref|YP_003843393.1| ATP-dependent DNA helicase RecG [Clostridium cellulovorans 743B]
 gi|302577617|gb|ADL51629.1| ATP-dependent DNA helicase RecG [Clostridium cellulovorans 743B]
          Length = 687

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 245/675 (36%), Positives = 375/675 (55%), Gaps = 34/675 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +++ +   +GVG K    L+K    G  N    +DLL Y P  + +      I+ I+ + 
Sbjct: 9   IYSDIKNLKGVGPKALQLLNK---SGIYN---LLDLLLYFPREYENITSSEDITNINGKE 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            + I   + +    +  K       +    GE T    +     +K  +F  ++ T+ G+
Sbjct: 63  KLKIKCKVLRIFPDKRTKTGKTITTIAFSDGENTFYGKWFNQPYVKKKYFIDKEYTLIGE 122

Query: 129 IKKLKNRIIMVHP-HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--- 184
           +KK+     + +P  +     ++ +   I   Y L  GL+ + F K+I   L  + +   
Sbjct: 123 VKKVGKDYEISNPKDFKEKEDKEKSDKNIIPKYPLKAGLTNNFFIKLITSILEAMFIREN 182

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPEWI    ++K    S+  A   IH P++         A  RL + EL    + +L+++
Sbjct: 183 LPEWI----IEKYKLCSLDYAIRNIHYPKEENAL---RAAERRLKFQELFTYSLKILMLK 235

Query: 245 KQFKKEIGIPINVEG---KIAQKI--LRN-IPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +  K       N EG   KIA ++  L+N +PF  T +Q  A+++IL DM +   M R+L
Sbjct: 236 EYVKS------NKEGIAFKIAPELVDLKNSLPFQLTDAQSKAVREILSDMKKPTPMNRLL 289

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITG 357
           QGDVGSGKT+VALIA+  A +   Q V+MAP  ILA QHY EFI+       I +E++TG
Sbjct: 290 QGDVGSGKTIVALIALFNAAKNQYQGVLMAPTEILANQHYHEFIR-IMAPFNIKIELLTG 348

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           +  +  + +  E I  G+  I+IGTHAL +D +Q+  L +++ DEQHRFGV QR KL  K
Sbjct: 349 STTKKQKERIKEEIKGGKIDILIGTHALIEDDVQFENLGIIVTDEQHRFGVMQRNKLFNK 408

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                VL+MTATPIPRTL L   GD+++S I + P GR+ I+T      + D + E  K 
Sbjct: 409 GKNIDVLVMTATPIPRTLALYLYGDLEVSIIDQLPPGREKIETKHGTKKQRDNIYEFSKK 468

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMD 535
            + EG++ Y +CP +E+ +  + +SV   F  L E +    ++  IHG+MS  DK+ VM+
Sbjct: 469 SIKEGRQVYVVCPLVEDNEVLDLKSVEALFIELKESYFKDYNVGFIHGKMSPKDKDKVMN 528

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FKN   ++L+ATTVIEVGI+V +A+I+IIENAE FGLAQLHQLRGRVGRG+  S C L+
Sbjct: 529 EFKNKETQILVATTVIEVGINVPNANIMIIENAERFGLAQLHQLRGRVGRGQYKSYCFLI 588

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
                SK +  R+ +++ + DGF IAEEDLK R  GE+ G++QSG    L++      ++
Sbjct: 589 ADTK-SKVTEKRMKIMEQSNDGFFIAEEDLKIRGTGEVFGLRQSGENGLLLSDVIEDINI 647

Query: 656 LEIARKDAKHILTQD 670
           L+ A K+AK ++  +
Sbjct: 648 LKCANKEAKELVASE 662


>gi|312897745|ref|ZP_07757161.1| ATP-dependent DNA helicase RecG [Megasphaera micronuciformis F0359]
 gi|310621129|gb|EFQ04673.1| ATP-dependent DNA helicase RecG [Megasphaera micronuciformis F0359]
          Length = 677

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 235/635 (37%), Positives = 352/635 (55%), Gaps = 23/635 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEIS--EERIVTITGYISQHSSFQLQKRRPY---KILLNDG 97
           DL+ Y P ++ DR     I +IS  ++R V + G +   S  +L+ RR     K+L++DG
Sbjct: 29  DLVQYFPRAYEDRSKIRAIKDISNNDDRPVLVNGTVK--SVVELRPRRGMTILKVLISDG 86

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
           TG + L++F +  +  K +F  G+ +   GK ++   R+ M  P         V   L+ 
Sbjct: 87  TGGLELVWFNQPFK--KRLFKVGKDVHAFGKTERAYGRLQMNSPEA--EPGPAVPGGLV- 141

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL-LQKKSFPSIAEAFNIIHNPRKAK 216
            VY+L  GL     ++ +    +    + + I   L L  +      E +  +H P    
Sbjct: 142 PVYALTEGLRQADVRRAVAALFADEASVKDLIPPCLSLDIQGTEVSVETYKALHFP---A 198

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            FE    AR+RLA++EL A Q  LLL R+  +    +     GK+ + +L N+PF  TK 
Sbjct: 199 SFEALERARKRLAFEELFALQAGLLLKRRAEQSGQAVKFGPNGKLIKGLLNNLPFLLTKG 258

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  A  DI+ D   +  M R++QGDVGSGKT+VA +A+A AVE G Q  +MAP GILA Q
Sbjct: 259 QTEAFADIVNDTETQVPMQRLVQGDVGSGKTVVAALALAKAVENGYQGALMAPTGILAIQ 318

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HYE + +  ++  + + ++TG      R   L++ AH +  I++GTHAL QD + +  L 
Sbjct: 319 HYEELNRLFKDLPVRIALLTGRTTGKERELILQKAAHREVDILVGTHALIQDDVIFSDLA 378

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LV+ DEQHRFGV+QR  L  K    H L +TATPIPRT+ L+  GD+D+S + E P GRK
Sbjct: 379 LVVTDEQHRFGVRQRAALRNKGKDVHTLFLTATPIPRTMALSVYGDLDVSTMRELPPGRK 438

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE-HFT 515
           P+KT  +       +   ++  ++ G + Y +CP +EE   ++ ++    + SL    F 
Sbjct: 439 PVKTYAVTEGMRSRIYAFMRKEIAAGHQCYVVCPLVEESASADLQAATALYESLKSTDFA 498

Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             S  ++HGRMS  +K+ VM+ F+ G  KLL+AT+VIEVG++V +A+I+ ++ AE FGLA
Sbjct: 499 DISCGLVHGRMSGKEKDEVMERFQRGDIKLLVATSVIEVGVNVPNATIMCVDGAERFGLA 558

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGE 632
           QLHQLRGRVGRG   + CILL     S N  T  RL  ++   DGF ++E+DL  R  G+
Sbjct: 559 QLHQLRGRVGRGAAQAYCILLAK---SGNEETRQRLKWMETIHDGFSLSEKDLLLRGAGQ 615

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           + G  Q G+P    A+      LL  AR  A+  L
Sbjct: 616 LFGSMQHGLPDLKAARIIEDADLLIPARDGAQAYL 650


>gi|322390145|ref|ZP_08063679.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 903]
 gi|321143176|gb|EFX38620.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 903]
          Length = 671

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 241/678 (35%), Positives = 381/678 (56%), Gaps = 44/678 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PLS   GVG K +    K+       ET   DLL Y P  + D   R  + E+ +  
Sbjct: 3   LHQPLSVLPGVGPKSAEKFKKL-----GIET-LEDLLLYFPFRYEDFKTR-NVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYR-----KTEMLKNVFFEGR 121
              I+G ++  ++ Q    KR   +  +  G   I + FF +     K E+ + V   G+
Sbjct: 56  KAVISGLVATPANVQYYGYKRNRLRFSIKQGDQVIAVNFFNQPYLADKIEVQQTVAIFGK 115

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVE 177
                G +  +K          +    +D     ++ VY +  G+S    V L K    +
Sbjct: 116 WDKAKGSLTGMK----------LLAQVEDD----LQPVYRVTQGVSQNSLVKLIKIAFDQ 161

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
            L +L  L E + + L ++    S ++A   +H P   KD      A  R+ ++ELL  Q
Sbjct: 162 GLDQL--LEENVPQILRERYQLMSRSQAVQAMHFP---KDLAEYKQALRRVKFEELLFFQ 216

Query: 238 IALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + L +++++      GI +  + +   +  + +PF  T++QE+++ +IL DM+    M R
Sbjct: 217 LQLQVLKEENHDASQGISLAWDPEKLAERKKQLPFELTQAQENSLNEILTDMASPYHMNR 276

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VA +AM AA+ AG QA +M P  ILA+QH E ++    +  + + ++T
Sbjct: 277 LLQGDVGSGKTVVAGLAMYAALSAGKQAALMVPTEILAEQHKESLQNLFPD--LPIALLT 334

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G +  A +R+ LE IA G A +I+GTHAL Q+ + Y  L LVI+DEQHRFGV QR  L +
Sbjct: 335 GGLKAAEKREVLEEIASGTAQLIVGTHALIQEGVHYQDLGLVIIDEQHRFGVSQRRILRE 394

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K   P VL+MTATPIPRTL +T+ GD+D+S I + PAGRK I T  +   +++ V++ L 
Sbjct: 395 KGQNPDVLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKEIITRWVKHEQLEVVLDWLV 454

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVM 534
             L +G +AY+I P IEE +  + ++ +     L   F   + ++++HG+M   +K+++M
Sbjct: 455 KELGKGSQAYFISPLIEESEALDLKNALALQEELEAFFGQRARVSLLHGKMKSEEKDAIM 514

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +FK     +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  IL
Sbjct: 515 QAFKEHQVDVLVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGNKQSYAIL 574

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           + +P  + +   R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       
Sbjct: 575 VANPK-TDSGKQRMKIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADLVEDYP 633

Query: 655 LLEIARKDAKHILTQDPD 672
           +LE  RK A  I+   PD
Sbjct: 634 ILEEGRKVASQIVA-TPD 650


>gi|307690625|ref|ZP_07633071.1| ATP-dependent DNA helicase RecG [Clostridium cellulovorans 743B]
          Length = 681

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 245/675 (36%), Positives = 375/675 (55%), Gaps = 34/675 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +++ +   +GVG K    L+K    G  N    +DLL Y P  + +      I+ I+ + 
Sbjct: 3   IYSDIKNLKGVGPKALQLLNK---SGIYN---LLDLLLYFPREYENITSSEDITNINGKE 56

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            + I   + +    +  K       +    GE T    +     +K  +F  ++ T+ G+
Sbjct: 57  KLKIKCKVLRIFPDKRTKTGKTITTIAFSDGENTFYGKWFNQPYVKKKYFIDKEYTLIGE 116

Query: 129 IKKLKNRIIMVHP-HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--- 184
           +KK+     + +P  +     ++ +   I   Y L  GL+ + F K+I   L  + +   
Sbjct: 117 VKKVGKDYEISNPKDFKEKEDKEKSDKNIIPKYPLKAGLTNNFFIKLITSILEAMFIREN 176

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPEWI    ++K    S+  A   IH P++         A  RL + EL    + +L+++
Sbjct: 177 LPEWI----IEKYKLCSLDYAIRNIHYPKEENALR---AAERRLKFQELFTYSLKILMLK 229

Query: 245 KQFKKEIGIPINVEG---KIAQKI--LRN-IPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +  K       N EG   KIA ++  L+N +PF  T +Q  A+++IL DM +   M R+L
Sbjct: 230 EYVKS------NKEGIAFKIAPELVDLKNSLPFQLTDAQSKAVREILSDMKKPTPMNRLL 283

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITG 357
           QGDVGSGKT+VALIA+  A +   Q V+MAP  ILA QHY EFI+       I +E++TG
Sbjct: 284 QGDVGSGKTIVALIALFNAAKNQYQGVLMAPTEILANQHYHEFIR-IMAPFNIKIELLTG 342

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           +  +  + +  E I  G+  I+IGTHAL +D +Q+  L +++ DEQHRFGV QR KL  K
Sbjct: 343 STTKKQKERIKEEIKGGKIDILIGTHALIEDDVQFENLGIIVTDEQHRFGVMQRNKLFNK 402

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                VL+MTATPIPRTL L   GD+++S I + P GR+ I+T      + D + E  K 
Sbjct: 403 GKNIDVLVMTATPIPRTLALYLYGDLEVSIIDQLPPGREKIETKHGTKKQRDNIYEFSKK 462

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMD 535
            + EG++ Y +CP +E+ +  + +SV   F  L E +    ++  IHG+MS  DK+ VM+
Sbjct: 463 SIKEGRQVYVVCPLVEDNEVLDLKSVEALFIELKESYFKDYNVGFIHGKMSPKDKDKVMN 522

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FKN   ++L+ATTVIEVGI+V +A+I+IIENAE FGLAQLHQLRGRVGRG+  S C L+
Sbjct: 523 EFKNKETQILVATTVIEVGINVPNANIMIIENAERFGLAQLHQLRGRVGRGQYKSYCFLI 582

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
                SK +  R+ +++ + DGF IAEEDLK R  GE+ G++QSG    L++      ++
Sbjct: 583 ADTK-SKVTEKRMKIMEQSNDGFFIAEEDLKIRGTGEVFGLRQSGENGLLLSDVIEDINI 641

Query: 656 LEIARKDAKHILTQD 670
           L+ A K+AK ++  +
Sbjct: 642 LKCANKEAKELVASE 656


>gi|332828323|gb|EGK01032.1| ATP-dependent DNA helicase RecG [Dysgonomonas gadei ATCC BAA-286]
          Length = 707

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 237/669 (35%), Positives = 372/669 (55%), Gaps = 27/669 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG K +  L+K +N  +       DLL+Y P  +IDR     I EI      + + G I
Sbjct: 23  GVGPKKAEILNKELNVFSVE-----DLLYYFPYKYIDRSRIYFIHEIDGNMPYIQLRGRI 77

Query: 77  SQHSSFQLQKRRPYKILLN---DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
           +    F+    R  K L+    DGTG I L++F +    ++  +       V GK     
Sbjct: 78  T---GFETHGERHKKRLVGHFTDGTGYIDLVWF-QGARFIEEKYKLNLPYIVFGKPTMFG 133

Query: 134 NRIIMVHPH---YIFHNSQDVNF-PLIEAVYSLPTG-LSVDLFKKIIVEALSRL-PVLPE 187
           ++  + HP    YI    +     P       +    L+    +K++  A + +   L E
Sbjct: 134 DKFNIAHPDIDPYINEEERPTGLMPYYNTTEKMKNHYLNSKAIQKMMAAAFTSIIRNLQE 193

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            + + ++Q      + +A   +H P  A        A+ RL ++EL   Q+ +L      
Sbjct: 194 TLPEKVIQNARLMDLKQAMRNVHFPENAT---LLREAQYRLKFEELFYIQLNILRYTADR 250

Query: 248 KKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           K ++   +   V G +     +N+PF  T +Q+  IK+I QDM+   +M R+LQGDVGSG
Sbjct: 251 KSKLKGFVFTKVGGYLNTFYEQNLPFPLTNAQKRIIKEIRQDMATGEQMNRLLQGDVGSG 310

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KTLVAL+ M  A++ G QA +MAP  ILA QHY  IK++     + VE++TG+  +  R 
Sbjct: 311 KTLVALMLMLIALDNGFQAALMAPTEILATQHYYTIKEFLAGMDVNVELLTGSTKKKDRE 370

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVL 424
           +    +      I+IGTHAL +D++Q+  L LV++DEQHRFGV QR KL T+    PH+L
Sbjct: 371 RIHSGLLTNDVQILIGTHALIEDTVQFGNLGLVVIDEQHRFGVAQRAKLWTKNTNPPHIL 430

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL +T  GD+D+S I E P GRKPI+T+     +   +   ++  L EG++
Sbjct: 431 VMTATPIPRTLAMTVYGDLDVSVIDELPPGRKPIQTIHQYDKKRGALYNSIRKQLQEGRQ 490

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543
            Y + P IEE ++ + +++ E F  + E F   ++  +HG+M   +K++ M  F     +
Sbjct: 491 VYMVYPLIEESEKLDLKNLEEGFEHIKEIFPEYTVCKVHGKMKPKEKDAEMQRFVTNEAQ 550

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +++ATTVIEVG++V +AS+++IE+A+ FGL+QLHQLRGRVGRG + S CIL+    LS +
Sbjct: 551 IMVATTVIEVGVNVPNASVMVIESAQRFGLSQLHQLRGRVGRGADQSYCILVTPYELSAD 610

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKD 662
           +  R++++  + DGF IAE DLK R  G++ G +QSG+P    IA       +++ AR+ 
Sbjct: 611 TRKRINIMVESNDGFEIAEADLKLRGPGDLEGTQQSGIPFNLRIANLVRDGEIVQYAREI 670

Query: 663 AKHILTQDP 671
           A+++L +DP
Sbjct: 671 AQNVLDEDP 679


>gi|303258026|ref|ZP_07344035.1| ATP-dependent DNA helicase RecG [Burkholderiales bacterium 1_1_47]
 gi|330999442|ref|ZP_08323156.1| ATP-dependent DNA helicase RecG [Parasutterella excrementihominis
           YIT 11859]
 gi|302859369|gb|EFL82451.1| ATP-dependent DNA helicase RecG [Burkholderiales bacterium 1_1_47]
 gi|329574868|gb|EGG56427.1| ATP-dependent DNA helicase RecG [Parasutterella excrementihominis
           YIT 11859]
          Length = 685

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 235/680 (34%), Positives = 366/680 (53%), Gaps = 32/680 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
            A +S  R  G+K +    ++   G  ++  F+    + P  + D      I E+     
Sbjct: 1   MAEISWKRKPGQKLAPLAERLKKLGLVSDWDFV---LHLPLRYEDETSITPIEELEVGVD 57

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
             + G ++ +S  +      ++  ++D T  + + F +     ++++   G+++ + G  
Sbjct: 58  AQVEGVVTNNSDNRFGN---FEAWVDDETDMLKVRFIHYYPS-IRDLLKVGKRVRLYGNP 113

Query: 130 KK-LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           +      + M+HP      S+      +  VY    G++    +K I  AL  + +    
Sbjct: 114 RAAFGGGLEMIHPKVRAPKSESDLPKTLSPVYPAGEGVTQLWLRKRIDRALMDVDI---- 169

Query: 189 IEKDLLQKKS-----FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIA 239
              DLL ++       P ++EA N +H+P+           T PA +RL +DELLA QI+
Sbjct: 170 --SDLLTEEERNELHLPGLSEAINSLHHPKAGAPIGPLQNRTDPAWQRLKFDELLAQQIS 227

Query: 240 LLLMRKQFKKEIG--IPI--NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           L   R+      G  +P+       +  K   ++PF  TK+Q    KDI + +  +  M 
Sbjct: 228 LKKSREMRDMNKGPLMPLRKGDNNSLTAKFFHSLPFKLTKAQIRVWKDIYESLGSERPMN 287

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA +A   A++AG QA +MAP  ILA+QH++ I  + +   + V  +
Sbjct: 288 RLVQGDVGSGKTVVAALAACQAIDAGYQAALMAPTEILAEQHFKKIISWLEPFGVRVVWL 347

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL--K 413
           +G      +R+AL  I  G A +++GTHA+ Q  +++  L L IVDEQHRFGV QRL  +
Sbjct: 348 SGKQKAKEKREALAAIEDG-AELVVGTHAIIQPDVKFKALGLAIVDEQHRFGVDQRLAIR 406

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             Q    PH+L+++ATPIPRTL ++ L DID+S I E P GR+ I T ++ ++R  +++E
Sbjct: 407 AQQNGMMPHLLMLSATPIPRTLAMSYLADIDVSVIDELPPGRQEISTKLVSMSRKGDLVE 466

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
            +   L+ G +AYW+CP IEE ++ +  +  E    + +      I ++HG+M+  DK +
Sbjct: 467 WIGKSLAAGLQAYWVCPLIEESEKVDLTAATETCEEIKQILPQFKIELLHGKMTPEDKNA 526

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VMD F  G  KLL++TTVIEVG+DV +ASI++IE+AE FGLAQLHQLRGRVGRG   S C
Sbjct: 527 VMDRFVKGETKLLVSTTVIEVGVDVPNASIMVIEHAERFGLAQLHQLRGRVGRGSIKSYC 586

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
             ++   LSK    RL V  +T DGF I+  DL+ R  GE LG +QSG      A  E  
Sbjct: 587 FAIFGDQLSKIGKERLQVFNDTTDGFEISRRDLELRGPGEFLGARQSGAALLRFADFETD 646

Query: 653 DSLLEIARKDA-KHILTQDP 671
             L+E A   A K I  +DP
Sbjct: 647 GFLVEKAMAMADKWIREKDP 666


>gi|160881019|ref|YP_001559987.1| ATP-dependent DNA helicase RecG [Clostridium phytofermentans ISDg]
 gi|160429685|gb|ABX43248.1| ATP-dependent DNA helicase RecG [Clostridium phytofermentans ISDg]
          Length = 678

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 230/657 (35%), Positives = 363/657 (55%), Gaps = 21/657 (3%)

Query: 27  LSKIINCGNANETRFIDLLFYHPSSFIDRHYR-------PK-ISEISEERIVTITGYISQ 78
           L KI   G   E +F  L  +  +  I+ + R       PK IS   E   + I   I+ 
Sbjct: 7   LGKIKGIGEKTELKFHKLSLFSVNDLIEHYPRGYEVYEMPKPISSAVEGTTIAIEAGIA- 65

Query: 79  HSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
            S  +++K R  +I   ++ D +G I L +F +    LKN    G +    GK+ +    
Sbjct: 66  -SIAEVKKIRNLQIITCMVRDPSGTIKLTWFNQP--FLKNTLRMGARFIFRGKVTRKNGS 122

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ 195
           +++  P         +   +++ +Y+L  GL+     K +   LS++    E++ K +++
Sbjct: 123 LVIGQPKIYKQEEYRILLNVMQPIYALTEGLTNHTVSKAVNTVLSQIDDFKEFLPKTIIK 182

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255
           +++  S   A   IH P KA+D      AR RL +DE     + L  +R+     +   +
Sbjct: 183 EQNLISRKAAIREIHFP-KARD--TMLEARRRLVFDEFFIYTVILQRIRENKGSILNGFV 239

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
             E +   +++  +P+  T +Q+   +++ +D+     M R++QGDVGSGKT++A++A+ 
Sbjct: 240 IKEQQEVSELIAGLPYELTNAQKKVWEEVKKDLLCNTSMNRLIQGDVGSGKTILAVLALL 299

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
              + G Q   M P  +LA+QH E ++       + +E++ G+M  + +RKA +RI + +
Sbjct: 300 LVAKNGYQGCFMVPTEVLAKQHLEALQSSLTRFGVKIELLVGSMTASMKRKAYQRIENHE 359

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             II+GTHAL Q+ + Y KL LVI DEQHRFGV+QR  L  K   PHVL+M+ATPIPRTL
Sbjct: 360 VDIIVGTHALIQEKVIYDKLALVITDEQHRFGVKQRESLLNKGDNPHVLVMSATPIPRTL 419

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +   GD+DIS + E PA R PIK  ++     +     +   +SEG++AY ICP +EE 
Sbjct: 420 AIILYGDLDISVVDELPANRLPIKNCVVDSTYRETAYRFIGKQISEGRQAYVICPMVEES 479

Query: 496 KESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           +     +VVE    L E   S   I  +HG+M   DK+ +M  F +G  K+L++TTV+EV
Sbjct: 480 ETMEAENVVEYTEKLKEALPSINGIEYLHGKMKPKDKDDIMGRFASGEIKVLVSTTVVEV 539

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G++V ++++++IENAE FGLAQLHQLRGRVGRG   S CIL+     SK +  RL +L  
Sbjct: 540 GVNVPNSTVMMIENAERFGLAQLHQLRGRVGRGAHQSYCILVSGSS-SKETMERLEILNK 598

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           + DGF IA EDLK R  G++ GI+QSG  +F I       S+L+ A + AK++  ++
Sbjct: 599 SNDGFFIASEDLKLRGPGDLFGIRQSGDLEFKIGDIYQDASVLKAANEAAKNLTAEE 655


>gi|323343283|ref|ZP_08083510.1| DNA helicase RecG [Prevotella oralis ATCC 33269]
 gi|323095102|gb|EFZ37676.1| DNA helicase RecG [Prevotella oralis ATCC 33269]
          Length = 700

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 237/682 (34%), Positives = 382/682 (56%), Gaps = 25/682 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            LN L   +   +GVG K    L+K ++        + DLL Y+P  ++DR    +I+++
Sbjct: 1   MLNILDQDIQYLQGVGPKRQAILNKELDIRT-----WRDLLEYYPYKYVDRSKVYRIADL 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           + +   V I G I     + +  R+   +   +DGTG   L++F     + KN +  G +
Sbjct: 56  TGDMPFVQIKGRILSFEEYAVSARKKRIVAHFSDGTGVCDLVWFQGTQYVYKN-YKVGEE 114

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGL---SVDLFKKI 174
             V GK      R    HP         ++   ++  Y         GL    ++   K 
Sbjct: 115 YIVFGKPGIYNGRYRFAHPDIDRAAEVQLSSMGMQPYYMTTEKMKKAGLQSRGIEKLTKT 174

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           +VE L++   LPE +   +       S  EA   IH P   K+ +    A+ RL ++EL 
Sbjct: 175 LVEKLTQ-DALPETLPPFITGPHHLVSRFEALRGIHYP---KNLDEMQRAQVRLKFEELF 230

Query: 235 AGQIALL-LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKN 292
             Q+ +L     + +K  G      G        N +PF+ T +Q+  + +I  DM    
Sbjct: 231 YVQLNILRYANDRRRKYRGYVFGRVGMQFNDFFHNHLPFALTNAQKRVMHEIRADMGSGR 290

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +M R+LQGDVGSGKT VAL++M  A++ G QA IMAP  ILA+QH   ++ +     I V
Sbjct: 291 QMNRLLQGDVGSGKTFVALMSMLIAIDNGFQACIMAPTEILAEQHLATLRAFLGAMSIRV 350

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
           E++TG +    RR  L+ +A G+  I++GTHA+ ++++Q+ +L L +VDEQHRFGV+QR 
Sbjct: 351 ELLTGIVKGKKRRHILDALAAGEVDILVGTHAIIEENVQFARLGLAVVDEQHRFGVEQRA 410

Query: 413 KLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           KL  K+   PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+     ++  +
Sbjct: 411 KLWAKSKNPPHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKLDTQMTSL 470

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
            + ++  + +G++ Y + P I+E ++ + +++ + F +L E F +  ++ +HG+M   +K
Sbjct: 471 YQGIRQQIEQGRQVYIVFPLIKESEKIDLKNLEDGFETLKEAFPNYRMSKVHGQMKPAEK 530

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E+ M  F NG  ++L++TTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S
Sbjct: 531 ETEMQRFVNGETQILVSTTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQS 590

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQP 649
            CIL+    L++ +  R+ ++  T DGF I+E DLK R  G++ G +QSG+   L IA  
Sbjct: 591 YCILVTTYKLTEETQKRIDIMCETNDGFRISEADLKLRGPGDLEGTQQSGVAFDLKIANI 650

Query: 650 ELHDSLLEIARKDAKHILTQDP 671
                L+++AR +A+ I+  DP
Sbjct: 651 ARDGQLIQLARDEAQKIIDNDP 672


>gi|28199580|ref|NP_779894.1| ATP-dependent DNA helicase [Xylella fastidiosa Temecula1]
 gi|182682315|ref|YP_001830475.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa M23]
 gi|28057695|gb|AAO29543.1| ATP-dependent DNA helicase [Xylella fastidiosa Temecula1]
 gi|182632425|gb|ACB93201.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa M23]
 gi|307578592|gb|ADN62561.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 718

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 236/658 (35%), Positives = 365/658 (55%), Gaps = 43/658 (6%)

Query: 52  FIDRHYRPKISEISEERIVTITGYI-SQHSSFQLQKRRPY-KILLNDGTGEI-TLLFFYR 108
           + DR     I+E+ +   V I   + +   SF   + RP  +++L+D    I T+ FF+ 
Sbjct: 52  YEDRTRLTPIAELQDGVAVQIEARVEAVERSF---RYRPLLRVVLSDDAHHILTMRFFHF 108

Query: 109 KTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGL 166
           +   +   F  G ++   G  K  +    +VHP Y I    + V+    ++ VY +  G+
Sbjct: 109 RAAQIAR-FTVGTRVRAYGVPKLGQYGWEIVHPSYRILAPGEAVSLNDCLDPVYPVIDGV 167

Query: 167 SVDLFKKIIVEALSRLP------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE- 219
              + +++I EAL  LP      +LP+    DL      P++  A  I+H P    D   
Sbjct: 168 GPAIVRQLIREALEHLPTDAALELLPDVWLSDL----GLPTLRTALLIMHRPPLDADIAR 223

Query: 220 ---WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
               T PA++RL+ +ELL+ Q++L   R   ++     +     +   +L  +PF  T +
Sbjct: 224 LMVGTHPAQQRLSLEELLSHQLSLRRQRIALQRHSAPALPDGAALVASLLHALPFHLTAA 283

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+     I  D+++   MLR++QGDVGSGKT+VA +A   AVE   Q  + AP  +LA+Q
Sbjct: 284 QQRVFAQIAADVAKPVPMLRLVQGDVGSGKTVVAALAALLAVEQNKQVALAAPTALLAEQ 343

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+  ++ + +   + V  +   +    R +AL  +A G A +++GTHAL Q+S+ ++ L 
Sbjct: 344 HFINLRDWLEPLGVRVYWLAAKVTGKARLQALNDVASGDAQVVVGTHALMQESVVFHDLA 403

Query: 397 LVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           L IVDEQHRFGV QRL L  K       PH L+MTATPIPRTL + +  D+D+S I E P
Sbjct: 404 LTIVDEQHRFGVHQRLLLRDKGATDGIVPHQLVMTATPIPRTLAMAAYADLDVSVIDEMP 463

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--------ESN---FR 501
            GR P++T ++   R  E++ER+++  ++G++ YW+C  I+E +         SN    R
Sbjct: 464 PGRTPVQTNVLSAERRPELVERIRLACAQGRQVYWVCTLIDESQTEAEQAPPSSNDIGHR 523

Query: 502 SVVERFNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           S V+   + +E  ++      + ++HGRM   +K+  M +FK     +L+ATTVIEVG+D
Sbjct: 524 SEVQAAQATYEALSAQLPGVRVGLVHGRMKAAEKQRTMRAFKCNEIDVLVATTVIEVGVD 583

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +AS++IIENAE  GLAQLHQLRGRVGRG  +SSC+LLY PPLS  +  RL +++ T D
Sbjct: 584 VPNASLMIIENAERLGLAQLHQLRGRVGRGSVVSSCVLLYQPPLSMLARQRLQIMRQTND 643

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           GF IAE+DL+ R  GE+LG +Q+G+  F +A       LL      A  +L + P L 
Sbjct: 644 GFAIAEKDLELRGPGELLGTRQTGLAAFRVADLARDAHLLPRVYSLANMLLDESPQLA 701


>gi|29349332|ref|NP_812835.1| ATP-dependent DNA helicase RecG [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29341240|gb|AAO79029.1| ATP-dependent DNA helicase recG [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 698

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 237/670 (35%), Positives = 362/670 (54%), Gaps = 21/670 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +           DL++Y P  ++DR     I EI      + + G I
Sbjct: 14  GVGPQKAAVLNKELEI-----YSLYDLIYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F     +L         I + GK      RI
Sbjct: 69  LGFETIGEGRQRRLTAHFSDGTGIVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP     +   ++   ++  Y+    +         +E +    +      LPE + 
Sbjct: 128 NVAHPDIDKPDDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             +L       + EA   IH P           A+ RL ++EL   Q+ +L   K  ++ 
Sbjct: 188 PKILSDHHLMPLTEALRNIHFPTNPDSLR---RAQYRLKFEELFYVQLNILCYAKDRQRR 244

Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
             G      G +      +N+PF  T +Q+  +K+I  D+    +M R+LQGDVGSGKTL
Sbjct: 245 YRGYIFERVGDVFNTFYSQNLPFQLTGAQKRVLKEIRNDVGSGRQMNRLLQGDVGSGKTL 304

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++TG++    R   L
Sbjct: 305 VALMSMLLALDNGFQACMMAPTEILANQHYETIKELLFGMDIRVELLTGSIKGKKREAIL 364

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427
             +  G   I+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L T+    PHVL+MT
Sbjct: 365 TGLLTGDVKILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRARLWTKNIQPPHVLVMT 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   ++  + EG++ Y 
Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRAVRKQIEEGRQVYI 484

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P I+E ++ + +++ E +  + E F   ++A +HG+M   +K+  M  F +G  ++++
Sbjct: 485 VYPLIKESEKIDLKNLEEGYQHILEEFPGCTVAKVHGKMKSAEKDEQMQLFISGQAQIMV 544

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ +  L++++  
Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVTNYKLTEDTRK 604

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665
           RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R  A+ 
Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIANLARDGQLLQYVRSIAED 664

Query: 666 ILTQDPDLTS 675
           I+  DP   S
Sbjct: 665 IVDNDPSAQS 674


>gi|310779483|ref|YP_003967816.1| ATP-dependent DNA helicase RecG [Ilyobacter polytropus DSM 2926]
 gi|309748806|gb|ADO83468.1| ATP-dependent DNA helicase RecG [Ilyobacter polytropus DSM 2926]
          Length = 684

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 235/643 (36%), Positives = 370/643 (57%), Gaps = 25/643 (3%)

Query: 9   LFAPLSTF--RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           +F PL  F  +G+  K    + K+ N G        DL +Y P ++ DR     I+++ E
Sbjct: 7   VFEPLGNFELKGITDKS---IEKLKNLGIVT---LYDLFYYFPRNYEDRTNFKSINQLKE 60

Query: 67  ERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
                I G +    + + + R+   K  ++DGTG + L++F  +   LK     G +   
Sbjct: 61  GEYAVIKGKLFGIETLRTRTRKTMIKAKVSDGTGFVELVWF--QMPYLKKSLKMGDEYIF 118

Query: 126 TGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLP 183
            G +K+  N   M +P Y  +  S+ V+  ++  +YS     +    +KI+  AL S   
Sbjct: 119 IGNVKRGYN-YQMTNPEYRKYAESKGVSKEIL-PIYSSNKDFNQRSLRKIVKTALDSYTE 176

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           +  E I +++L+K S     +A   IH P+  +D E    A+ R A +ELL  +  +L  
Sbjct: 177 LFQENIPEEILKKYSIADRKKALKDIHFPKNTRDIE---EAKRRFAIEELLILETGILEK 233

Query: 244 R---KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           R        E+ + +     + +K L N+ +S TK+Q+  + +I ++++    + R+LQG
Sbjct: 234 RFAIDSMNNEMYV-LEDNKNLVKKFLGNLGYSLTKAQKRVVTEIYKELNNGKIINRLLQG 292

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA+I +   +E   Q V MAP  ILA QHY  I        I VE++TG++ 
Sbjct: 293 DVGSGKTIVAVIMLLYMIENSYQGVFMAPTEILATQHYLSIADTLLELGIRVELLTGSVK 352

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +   LE I +G+  +I+GTH+L +D+++++KL L+++DEQHRFGV QR KL +K   
Sbjct: 353 GRKKDAILEDIKNGKIDLIVGTHSLIEDNVEFHKLGLIVIDEQHRFGVIQRKKLREKGVI 412

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEVIERLKVVL 479
            ++++M+ATPIPR+L L+  GD+D+S I E P GR P+KT  I   +  ++    ++  L
Sbjct: 413 ANLIVMSATPIPRSLALSIYGDLDVSIIDEMPPGRTPVKTKWINSSSDAEKAYSFIQKKL 472

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFK 538
           +EG++AY++ P IEE ++ +F+SV E F  +   F    A ++HGRM + +K+ +M  FK
Sbjct: 473 TEGRQAYFVAPLIEESEKLSFKSVQELFKEVTRRFPQCRAGLLHGRMKNSEKDEIMHFFK 532

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +L+ATTVIEVGI+V +ASI++I N E FGL+ LHQLRGRVGRG   S C  L+  
Sbjct: 533 NHKLDILVATTVIEVGINVPNASIMVINNTERFGLSALHQLRGRVGRGIHPSYC-FLFSE 591

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
             +  S +RL ++++T DGF IAEEDL+ RK GEI GI+QSG 
Sbjct: 592 TDNDVSKSRLMIMESTTDGFKIAEEDLRLRKPGEIFGIRQSGF 634


>gi|71276566|ref|ZP_00652840.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Dixon]
 gi|71900210|ref|ZP_00682349.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1]
 gi|71162637|gb|EAO12365.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Dixon]
 gi|71730043|gb|EAO32135.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1]
          Length = 718

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 237/658 (36%), Positives = 364/658 (55%), Gaps = 43/658 (6%)

Query: 52  FIDRHYRPKISEISEERIVTITGYI-SQHSSFQLQKRRPY-KILLNDGTGEI-TLLFFYR 108
           + DR     I+E+ +   V I   + +   SF   + RP  +++L+D    I T+ FF+ 
Sbjct: 52  YEDRTRLTPIAELQDGVAVQIEARVEAVERSF---RYRPLLRVVLSDDAHHILTMRFFHF 108

Query: 109 KTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGL 166
           +   +   F  G ++   G  K  +    +VHP Y I    + V+    ++ VY +  G+
Sbjct: 109 RAAQIAR-FTVGTRVRAYGVPKLGQYGWEIVHPSYRILAPGEAVSLNDCLDPVYPVIDGV 167

Query: 167 SVDLFKKIIVEALSRLP------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE- 219
              + +++I EAL  LP      +LP+    DL      P++  A  I+H P    D   
Sbjct: 168 GPAIVRQLIREALEHLPTDAVLELLPDVWLSDL----GLPTLRTALLIMHRPPLDADIAR 223

Query: 220 ---WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
               T PA++RL+ +ELLA Q++L   R   ++     +     +   +L  +PF  T +
Sbjct: 224 LMVGTHPAQQRLSLEELLAHQLSLRRQRIALQRHSAPALPDGAALVASLLHALPFHLTAA 283

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+     I  D+++   MLR++QGDVGSGKT+VA +A   AVE   Q  + AP  +LA+Q
Sbjct: 284 QQRVFAQIAADVAKPVPMLRLVQGDVGSGKTVVAALAALLAVEQNKQVALAAPTALLAEQ 343

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H   ++ + +   + V  +   +    R +AL  +A G A +++GTHAL Q+S+ ++ L 
Sbjct: 344 HLINLRDWLEPLGVRVHWLAAKVTGKARLQALNDVASGDAQVVVGTHALMQESVVFHDLA 403

Query: 397 LVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           L IVDEQHRFGV QRL L  K       PH L+MTATPIPRTL + +  D+D+S I E P
Sbjct: 404 LTIVDEQHRFGVHQRLLLRDKGAIAGIVPHQLVMTATPIPRTLAMAAYADLDVSVIDEMP 463

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--------ESNF---R 501
            GR P++T ++   R  E++ER+++  ++G++ YW+C  I+E +         SN    R
Sbjct: 464 PGRTPVQTNVLSAERRPELVERIRLACAQGRQVYWVCTLIDESQTEAEHAPHSSNDIGPR 523

Query: 502 SVVERFNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           S V+   + +E  ++      + ++HGRM   +K+  M +FK     +L+ATTVIEVG+D
Sbjct: 524 SEVQAAQATYEALSAQLPGVRVGLVHGRMKAAEKQRTMRAFKCNEIDVLVATTVIEVGVD 583

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +AS++IIENAE  GLAQLHQLRGRVGRG  +SSC+LLY PPLS  +  RL +++ T D
Sbjct: 584 VPNASLMIIENAERLGLAQLHQLRGRVGRGSVVSSCVLLYQPPLSMLARQRLQIMRQTND 643

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           GF IAE+DL+ R  GE+LG +Q+G+  F +A       LL      A  +L + P L 
Sbjct: 644 GFAIAEKDLELRGPGELLGTRQTGLAAFRVADLARDAHLLPRVYSLANMLLDESPQLA 701


>gi|170756283|ref|YP_001782038.1| ATP-dependent DNA helicase RecG [Clostridium botulinum B1 str.
           Okra]
 gi|169121495|gb|ACA45331.1| ATP-dependent DNA helicase RecG [Clostridium botulinum B1 str.
           Okra]
          Length = 679

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 247/681 (36%), Positives = 388/681 (56%), Gaps = 44/681 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66
           +++P++T +GVG K    L K   C   N    +DLL Y P    FID + + K+  +S+
Sbjct: 3   VYSPITTLKGVGPKTKEQLEK---CMIFN---IMDLLLYFPRDYEFIDNYSKDKL--LSK 54

Query: 67  ERIVTITGYISQHSSFQLQKR-RPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + I+ +     Q  + +   R R  KIL     NDG   I   +F +    +KN F  G 
Sbjct: 55  KVIIKV-----QVENIKRDIRTRTGKILTTIIFNDGEKAIVGSWFNQP--YIKNYFKIGE 107

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           +  + G +K+ +  + + +   I  N  +++V    I   Y L   L  +L  K++   L
Sbjct: 108 EYVLQGSLKEYRGNLTINNAQ-ILKNKCAEEVEERKIIPKYPLKGDLKNNLLIKLVDSVL 166

Query: 180 SRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           + + +   LP W    L++K  F S+ ++   IH P   K+ E    +  RL + ELLA 
Sbjct: 167 TNIDIGENLPIW----LIEKYKFLSLDKSIRTIHKPENQKELE---ESIRRLKFQELLAY 219

Query: 237 QIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            + +  +++  +    GI   V  +I   ++  +PF  T +Q   +++I +D  ++  M 
Sbjct: 220 CLKIAFLKEYLETATEGISFIVSEEI-NNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMN 278

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT++ALI++   ++ G Q V++AP  ILA QHYE   K  ++  + +E++
Sbjct: 279 RLLQGDVGSGKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELL 338

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
            G++  + +++  E++  G+  +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+ 
Sbjct: 339 IGSIKVSSKKEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKML 398

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K  +   L+M+ATPIPR+L L+  GD+D+S I E P GR+ I T  +  +    V    
Sbjct: 399 NKGKSVDTLVMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFA 458

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESV 533
              ++ G++ Y +CP +EEK+E N  SV + +N L  E+F    IAI+HG+M   +K+++
Sbjct: 459 LKEINNGRQVYIVCPLVEEKEELNLNSVEKLYNDLKGEYFKEVEIAILHGKMKGKEKDTI 518

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FK G  K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CI
Sbjct: 519 MKDFKEGKIKALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCI 578

Query: 594 LLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           L+      KN     R+ ++K++ DGFL+AEEDLK R  GEI G KQ G    L+A    
Sbjct: 579 LIAR---VKNDIIRKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIE 635

Query: 652 HDSLLEIARKDAKHILTQDPD 672
              LL IA  ++K I+  + +
Sbjct: 636 DIHLLRIANMESKKIIDSNNE 656


>gi|317404929|gb|EFV85296.1| ATP-dependent DNA helicase [Achromobacter xylosoxidans C54]
          Length = 696

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 243/672 (36%), Positives = 359/672 (53%), Gaps = 28/672 (4%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           +G GK  +    K+ N G      F+    + P  + D      IS++       + G I
Sbjct: 16  KGAGKAMTDTERKLRNLGLVLPEDFV---LHLPLRYEDETRVIPISQLRPGFAGQVEGEI 72

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITL--LFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
           ++ S    + RR     L D +GE+ L  L FY   +    V   G+++   G+++    
Sbjct: 73  TK-SEVLYRPRRQLTATLADDSGELQLRWLNFYPSQQKQVTV---GKRLRARGEVRGGLF 128

Query: 135 RIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
              MVHP      + D   P  +  VY    GL     ++ I +AL R   L + +    
Sbjct: 129 GREMVHPRL---TNADAPLPTALTPVYPSTEGLPQLTLRRAIAQALDRAD-LSDTLPPQA 184

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQ--F 247
           L +   P  A A   +H P + +      +   PA  R+ +DELLA Q++L   R     
Sbjct: 185 LARYDLPPFAPAIRALHTPAQGESEAALLDRVHPAWRRIKFDELLAQQLSLAAARAARRV 244

Query: 248 KKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           K+   +P+  E G +  ++ + +PF  T +Q+  + +I  D+++   M R+LQGDVGSGK
Sbjct: 245 KEAEVLPVRDEPGGLVDRLYQALPFKLTGAQQRVVAEISADLARPYPMHRLLQGDVGSGK 304

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA IA A A+  G Q  +MAP  ILA+QH+  +  + Q   + V  ++G++    RR+
Sbjct: 305 TVVAAIAAAQAIAGGAQVALMAPTEILAEQHFRKLVSWLQPLGVNVAWLSGSLTAKARRE 364

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------ 420
           A    A G   +++GT AL QD +++ +L L IVDEQHRFGV QRL LT+K         
Sbjct: 365 AAAAAADGSVQLVVGTQALIQDHVEFQRLGLSIVDEQHRFGVGQRLALTRKGETVRGRIV 424

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH L M+ATPIPRTL +T   D+D+S I E P GR P+ T ++   R +EVI  +     
Sbjct: 425 PHQLNMSATPIPRTLAMTFFADLDVSVIDELPPGRTPVLTKLVSDARREEVIAHIAQAAR 484

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
            G++AYW+CP +EE +    ++ V+ +  +        I ++HGR+   +K +VM +F+ 
Sbjct: 485 GGQQAYWVCPLVEESEALELQTAVDTYEGMRVDLPDLRIGLVHGRLPQAEKAAVMQAFRE 544

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  P
Sbjct: 545 GEIDLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCVLLYQTP 604

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+ +  RL  +  T DGF IA  DL+QR  GE LG +QSGM     A  E    + E A
Sbjct: 605 LSQVARERLRAMFETSDGFEIARRDLEQRGPGEFLGTRQSGMALLRFADLETDAEIAEQA 664

Query: 660 RKDAKHILTQDP 671
           R  A  +  + P
Sbjct: 665 RDAAVWLRAEHP 676


>gi|291543374|emb|CBL16483.1| ATP-dependent DNA helicase RecG [Ruminococcus sp. 18P13]
          Length = 680

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 243/700 (34%), Positives = 378/700 (54%), Gaps = 40/700 (5%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID-RHYRPKISEI 64
           +N LF P+S  RGVG+K +   +++       +T + DLLF+ P S++D R+  P +S  
Sbjct: 1   MNELFRPISALRGVGEKRAKAYARL-----GIQTPY-DLLFHIPRSYLDFRNPEPVLSAP 54

Query: 65  SEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFE--- 119
            +   V + G I++    Q  ++    +K    DG  + T++F+        N F+    
Sbjct: 55  LDTPCV-VEGCITRKLPEQRIRKGLSVFKATATDGESDFTVVFY--------NNFYAFDA 105

Query: 120 ---GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKII 175
              G      GK+     R  +  P Y+       + P L++ VY L  GL+  + +  +
Sbjct: 106 LKVGETYRFAGKLTGTLLRREIHSPQYL-----RADCPVLMKPVYPLTNGLTNPMVQANM 160

Query: 176 VEALSRLPVLP-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            +AL  L   P + +   + ++    ++ EA  ++H P      +    A+ RLA+D LL
Sbjct: 161 RQALELLRREPFDGLPSGIRRQYDLCTLPEALGVVHQPASEPILQE---AKRRLAFDALL 217

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
             Q+ +L++R + + +    ++ +  +      ++PF+PT +Q+ +I +I  D+ +    
Sbjct: 218 QLQLGMLMLRNRSRAQTAYTMDPDTDLT-PFYASLPFAPTNAQKRSIAEICGDLCRTVPA 276

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVGSGKT VA  A     + G Q+ +MAP  ILA QHY  ++ +     I V +
Sbjct: 277 NRLLQGDVGSGKTAVAAAACYFTCKNGFQSALMAPTEILATQHYHTLEGFLSPLGIRVGL 336

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG++P   +R+    +  G+  +++GTHAL Q    +  L LVI DEQHRFGV QR  L
Sbjct: 337 LTGSLPAKEKRRIRTALQAGELDVLVGTHALIQKDTVFPALGLVITDEQHRFGVGQRAAL 396

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            QK   PH L+M+ATPIPRTL L   GD+DIS + E P GR PI+T  +           
Sbjct: 397 AQKGGTPHKLVMSATPIPRTLALIVYGDLDISVLDELPVGRLPIRTYAVTGKLRQRAYGF 456

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKES 532
           ++  +  G++AY +CP IEE  ES+  +V      L     ++  + ++HG+M   +KE 
Sbjct: 457 VRSRMDAGEQAYIVCPMIEE-GESDLLAVTSYAEQLRAGAFAAYRVGLLHGKMKPAEKEQ 515

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM SFK G   LL+ TTV+EVG+DV +A++++IEN+E FGL+QLHQLRGRVGRG + S C
Sbjct: 516 VMASFKAGELDLLVCTTVVEVGVDVPNATVMLIENSERFGLSQLHQLRGRVGRGSKQSHC 575

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           IL+     S+ S  RL VL +T DGF IAEEDLK R  G+  G  Q G+P   +A+    
Sbjct: 576 ILITD-STSEESRERLRVLSSTTDGFRIAEEDLKLRGPGDFFGSAQHGLPPVHLAELAED 634

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRI-LLYLYQYN 691
             L+   ++ A+ IL  DP L      ++R  ++ LY  N
Sbjct: 635 MELVRQTQQAARDILEADPQLRDPVNHALRADVVRLYARN 674


>gi|255011369|ref|ZP_05283495.1| ATP-dependent DNA helicase RecG [Bacteroides fragilis 3_1_12]
 gi|313149184|ref|ZP_07811377.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
 gi|313137951|gb|EFR55311.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
          Length = 698

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 236/668 (35%), Positives = 366/668 (54%), Gaps = 25/668 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   + +     DLL+Y P  ++DR     I EI      + + G I
Sbjct: 14  GVGPQKAAVLNKELEIYSLH-----DLLYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGKI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +F   ++R      +DGTG + L++F +  + +   +    +  + GK      RI
Sbjct: 69  LGFETFGEGRQRRLLAHFSDGTGVVDLVWF-QGIKYVTGKYKLHEEYIIFGKPTVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPL--IEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEW 188
            + HP     N  D+      ++  Y+    +         +E +    +      LPE 
Sbjct: 128 NVAHPD--IDNPADLKLSSMGLQPYYNTTEKMKRSFLNSHAIEKMMATIIGQIQEPLPET 185

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   L+       + EA   IH P      E    A+ RL ++EL   Q+ +L   K  +
Sbjct: 186 LSPKLIADHHLMPLTEALRNIHFPSNP---ELLRKAQYRLKFEELFYVQLNILRYAKDRQ 242

Query: 249 KEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           ++  G      G+I      +N+PF  T +Q+  +++I QD+    +M R+LQGDVGSGK
Sbjct: 243 RKYRGYVFETVGEIFNTFYSKNLPFELTGAQKRVLREIRQDVGCGKQMNRLLQGDVGSGK 302

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVAL++M  A++ G QA +MAP  ILA QHY+ IK+      + VE++TG++    R  
Sbjct: 303 TLVALMSMLIALDNGFQACMMAPTEILANQHYDTIKELLFGMDVRVELLTGSVKGKKREA 362

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLL 425
            L  +  G  HI+IGTHA+ +D++ +  L L ++DEQHRFGV QR +L  K+   PHVL+
Sbjct: 363 ILAGLLTGDVHILIGTHAVIEDTVNFASLGLAVIDEQHRFGVAQRARLWSKSIQPPHVLV 422

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   ++  + EG++ 
Sbjct: 423 MTATPIPRTLAMTLYGDLDVSVIDELPPGRKPISTIHQFDNRRESLYRSVRKQIEEGRQI 482

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ M  F +G  ++
Sbjct: 483 YIVYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFISGEAQI 542

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           ++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+    L++ +
Sbjct: 543 MVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLTEET 602

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDA 663
             RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R  A
Sbjct: 603 RKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVRNIA 662

Query: 664 KHILTQDP 671
           + I   DP
Sbjct: 663 EEITDADP 670


>gi|296875899|ref|ZP_06899960.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 15912]
 gi|296433140|gb|EFH18926.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 15912]
          Length = 671

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 242/678 (35%), Positives = 380/678 (56%), Gaps = 44/678 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PLS   GVG K +    K+       ET   DLL Y P  + D   R  + E+ +  
Sbjct: 3   LHQPLSVLPGVGPKSAEKFKKL-----GIET-LEDLLLYFPFRYEDFKTR-NVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYR-----KTEMLKNVFFEGR 121
              I+G ++  ++ Q    KR   +  +  G   I + FF +     K E+ + V   G+
Sbjct: 56  KAVISGVVATPANVQYYGYKRNRLRFSIKQGDQVIAVNFFNQPYLADKIEVQQTVAIFGK 115

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVE 177
                G +  +K          +    +D     ++ VY +  G+S    V L K    +
Sbjct: 116 WDKAKGSLTGMK----------LLAQVEDD----LQPVYRVTQGVSQNSLVKLIKIAFDQ 161

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
            L +L  L E + + L  +    S ++A   +H P   KD      A  R+ ++ELL  Q
Sbjct: 162 GLDQL--LEENVPQILRDRYQLMSRSQAVQAMHFP---KDLAEYKQALRRVKFEELLFFQ 216

Query: 238 IALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + L +++++      GI +  + +   +  + +PF  T++QE+++ +IL DM+    M R
Sbjct: 217 LQLQVLKEENHDASQGISLACDPEKLAERKKQLPFELTQAQENSLNEILTDMASPYHMNR 276

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VA +AM AA+ AG QA +M P  ILA+QH E ++    +  + + ++T
Sbjct: 277 LLQGDVGSGKTVVAGLAMYAALSAGKQAALMVPTEILAEQHKESLQNLFPD--LPIALLT 334

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G +  A +R+ LE IA G   +I+GTHAL Q+ + Y  L LVI+DEQHRFGV QR  L +
Sbjct: 335 GGLKVAEKREVLEEIASGTVQLIVGTHALIQEGVHYQDLGLVIIDEQHRFGVSQRRILRE 394

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K   P VL+MTATPIPRTL +T+ GD+D+S I + PAGRK I T  +   +++ V++ L 
Sbjct: 395 KGQNPDVLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKEIITRWVKHEQLEVVLDWLV 454

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVM 534
             L +G +AY+I P IEE +  + ++ +     L   F   + I+++HG+M   +K+++M
Sbjct: 455 KELGKGSQAYFISPLIEESEALDLKNALALQEELEAFFGQRARISLLHGKMKSEEKDAIM 514

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +FK     +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  IL
Sbjct: 515 QAFKEHQVDVLVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGNKQSYAIL 574

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           + +P  + +   R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       
Sbjct: 575 VANPK-TDSGKQRMKIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADLVEDYP 633

Query: 655 LLEIARKDAKHILTQDPD 672
           +LE ARK A  I+   PD
Sbjct: 634 ILEEARKVASQIVA-TPD 650


>gi|237719141|ref|ZP_04549622.1| ATP-dependent DNA helicase recG [Bacteroides sp. 2_2_4]
 gi|229451520|gb|EEO57311.1| ATP-dependent DNA helicase recG [Bacteroides sp. 2_2_4]
          Length = 698

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 242/681 (35%), Positives = 367/681 (53%), Gaps = 43/681 (6%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   + +     DL++Y P  +IDR     I EI      + + G I
Sbjct: 14  GVGPQKAAVLNKELEIYSLH-----DLIYYFPYKYIDRSRIYYIHEIDGNMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F     +L         I + GK      RI
Sbjct: 69  LGFETIGEGRQRRLTAHFSDGTGVVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP         ++   ++  Y+    +         +E +    +      LPE + 
Sbjct: 128 NVAHPDVDKPEDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP-----ARERLAYDELLAGQIALLLMRK 245
             LL +     + EA   IH P        T+P     A+ RL ++EL   Q+ +L   K
Sbjct: 188 SKLLAEHHLMPLTEALRNIHFP--------TNPDVLRRAQYRLKFEELFYVQLNILRYAK 239

Query: 246 QFKKEIGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
             +K         G I +K+         +N+PF  T +Q+  +K+I  D+    +M R+
Sbjct: 240 DRQKR------YRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRL 293

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++TG
Sbjct: 294 LQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTG 353

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++    R   L  +  G   I+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L  K
Sbjct: 354 SIKGKRREAILTGLLTGDVKILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSK 413

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   ++
Sbjct: 414 NVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRSVR 473

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMD 535
             + EG++ Y + P I+E ++ + +++ E +  + E F   ++  +HG+M   +K+  M 
Sbjct: 474 KQIEEGRQVYIVYPLIKESEKIDLKNLEEGYQHVLEEFPKCTVCKVHGKMKPAEKDEQMQ 533

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+
Sbjct: 534 LFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILV 593

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDS 654
            +  L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       
Sbjct: 594 TNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRDGQ 653

Query: 655 LLEIARKDAKHILTQDPDLTS 675
           LL+  R  A+ I+ QDP   S
Sbjct: 654 LLQYVRAIAESIVEQDPAAQS 674


>gi|254751166|ref|ZP_05203205.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Vollum]
          Length = 564

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 203/517 (39%), Positives = 321/517 (62%), Gaps = 18/517 (3%)

Query: 156 IEAVYSLPTGLSVDLFKKIIVEAL-----SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH 210
           +E VYS+   L+V   ++ I +AL     S + VLP+ +   L + K  P   EA   +H
Sbjct: 23  VEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEVLPDGL---LSRYKLLPRY-EALRALH 78

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNI 269
            P   +D +    AR R  Y+E    Q+ +  +RK + +   G    +  +  Q+ +  +
Sbjct: 79  FPTGQEDLKQ---ARRRFVYEEFFLFQLKMQTLRKMERENSKGTKKEIPSEELQEFIDAL 135

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T +Q   + +I++DM+   RM R+LQGDVGSGKT+VA I + AA  A  Q  +M P
Sbjct: 136 PFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMVP 195

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY+ + +   +  + VE++T ++    RR+ L ++  G+  I++GTHAL QD 
Sbjct: 196 TEILAEQHYQSLAETFSHFGMKVELLTSSVKGVRRREILAKLEQGEIDILVGTHALIQDE 255

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +++L LVI DEQHRFGV QR  L +K  +P VL MTATPIPRTL +T+ G++D+S I 
Sbjct: 256 VIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIID 315

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           E PAGRK I+T     + +D V+  ++  +++G++AY ICP IEE ++ + ++ ++  + 
Sbjct: 316 EMPAGRKVIETYWAKHDMLDRVLGFVEKEINKGRQAYVICPLIEESEKLDVQNAIDLHSM 375

Query: 510 LHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           L  H+     + ++HGR+S  +KE +M  F     ++L++TTV+EVG++V +A++++I +
Sbjct: 376 LTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYD 435

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           AE FGL+QLHQLRGRVGRG E S C+L+  P  S+    R+ ++  T DGF+++E+DL+ 
Sbjct: 436 AERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLEL 494

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDA 663
           R  G+  G KQSG+P+F +A   +HD   LE AR+DA
Sbjct: 495 RGPGDFFGSKQSGLPEFKVADM-VHDYRALETARQDA 530


>gi|53715245|ref|YP_101237.1| ATP-dependent DNA helicase RecG [Bacteroides fragilis YCH46]
 gi|52218110|dbj|BAD50703.1| ATP-dependent DNA helicase RecG [Bacteroides fragilis YCH46]
          Length = 698

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 234/666 (35%), Positives = 366/666 (54%), Gaps = 21/666 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   + +     DLL+Y P  ++DR     I EI      + + G I
Sbjct: 14  GVGPQKAAVLNKELEIYSLH-----DLLYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGKI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +F   ++R      +DGTG + L++F +  + + N +    +  V GK      RI
Sbjct: 69  LGFETFGEGRQRRLLAHFSDGTGVVDLVWF-QGIKYVTNKYKLHEEYIVFGKPTVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP         ++   ++  Y+    +         +E +    +      L E + 
Sbjct: 128 NVAHPDIDSPADLKLSSMGLQPYYNTTEKMKRSFLNSHAIEKMMATVIGQIQEPLSETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             L+      S+ +A   IH P      E    A+ RL ++EL   Q+ +L   K  +++
Sbjct: 188 PKLIADHHLMSLTDALRNIHFPSNP---ELLRKAQYRLKFEELFYVQLNILRYAKDRQRK 244

Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
             G      G+I      +N+PF  T +Q+  +++I QD+    +M R+LQGDVGSGKTL
Sbjct: 245 YRGYVFETVGEIFNTFYSKNLPFELTGAQKRVLREIRQDVGCGKQMNRLLQGDVGSGKTL 304

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL++M  A++ G QA +MAP  ILA QHY+ I++      + VE++TG++    R   L
Sbjct: 305 VALMSMLMALDNGFQACMMAPTEILANQHYDTIRELLFGMDVRVELLTGSVKGKKREAIL 364

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMT 427
             +  G  HI+IGTHA+ +D++ +  L L ++DEQHRFGV QR +L  K+   PHVL+MT
Sbjct: 365 TGLLTGDVHILIGTHAVIEDTVNFASLGLAVIDEQHRFGVAQRARLWSKSVQPPHVLVMT 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   ++  + EG++ Y 
Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRRESLYRSVRKQIEEGRQVYI 484

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ M  F +G  ++++
Sbjct: 485 VYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFISGDAQIMV 544

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+    L++ +  
Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLTEETRK 604

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665
           RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R  A+ 
Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVRTIAEE 664

Query: 666 ILTQDP 671
           I   DP
Sbjct: 665 ITDADP 670


>gi|312868533|ref|ZP_07728733.1| ATP-dependent DNA helicase RecG [Streptococcus parasanguinis F0405]
 gi|311096278|gb|EFQ54522.1| ATP-dependent DNA helicase RecG [Streptococcus parasanguinis F0405]
          Length = 671

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 242/678 (35%), Positives = 381/678 (56%), Gaps = 44/678 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PLS   GVG K +    K+       ET   DLL Y P  + D   R  + E+ +  
Sbjct: 3   LHQPLSVLPGVGPKSAEKFKKL-----GIET-LEDLLLYFPFRYEDFKTR-NVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYR-----KTEMLKNVFFEGR 121
              I+G ++  ++ Q    KR   +  +  G   I + FF +     K E+ + V   G+
Sbjct: 56  KAVISGVVATPANVQYYGYKRNRLRFSIKQGDQVIAVNFFNQPYLADKIEVQQTVAIFGK 115

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS----VDLFKKIIVE 177
                G +  +K          +    +D     ++ VY +  G+S    V L K    +
Sbjct: 116 WDKAKGSLTGMK----------LLAQVEDD----LQPVYRVTQGVSQNSLVKLIKIAFDQ 161

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
            L +L  L E +   L  +    S ++A   +H P   KD      A  R+ ++ELL  Q
Sbjct: 162 GLDQL--LEENVPHILRDRYQLMSRSQAVQAMHFP---KDLAEYKQALRRVKFEELLFFQ 216

Query: 238 IALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + L +++++      GI +  + +   +  + +PF  T++QE+++ +IL DM+    M R
Sbjct: 217 LQLQVLKEENHDASQGISLAWDPEKLAERKKQLPFELTQAQENSLNEILTDMASPYHMNR 276

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VA +AM AA+ AG QA +M P  ILA+QH E ++    +  + + ++T
Sbjct: 277 LLQGDVGSGKTVVAGLAMYAALSAGKQAALMVPTEILAEQHKESLQNLFPD--LPIALLT 334

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G +  A +R+ LE IA G+A +I+GTHAL Q+ + Y  L LVI+DEQHRFGV QR  L +
Sbjct: 335 GGLKAAEKREVLEEIASGKAQLIVGTHALIQEGVHYQDLGLVIIDEQHRFGVSQRRILRE 394

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K   P VL+MTATPIPRTL +T+ GD+D+S I + PAGRK I T  +   +++ V++ L 
Sbjct: 395 KGQNPDVLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKEIITRWVKHEQLEVVLDWLV 454

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVM 534
             L +G +AY+I P IEE +  + ++ +     L   F   + ++++HG+M   +K+++M
Sbjct: 455 KELGKGSQAYFISPLIEESEALDLKNALALQEELETFFGQRARVSLLHGKMKSEEKDAIM 514

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +FK     +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  IL
Sbjct: 515 QAFKEHQVDVLVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGNKQSYAIL 574

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           + +P  + +   R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       
Sbjct: 575 VANPK-TDSGKQRMKIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADLVEDYP 633

Query: 655 LLEIARKDAKHILTQDPD 672
           +LE ARK A  I+   PD
Sbjct: 634 ILEEARKVASKIVAT-PD 650


>gi|163856603|ref|YP_001630901.1| ATP-dependent DNA helicase RecG [Bordetella petrii DSM 12804]
 gi|163260331|emb|CAP42633.1| ATP-dependent DNA helicase [Bordetella petrii]
          Length = 696

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 229/601 (38%), Positives = 338/601 (56%), Gaps = 22/601 (3%)

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK-LKNRIIMVHPHYIF 145
           RR    ++ D +GE+ L +        K +   GR++   G+++  L  R I VHP    
Sbjct: 82  RRQLTAVMADDSGELQLRWLNFYPSQQKQLAI-GRRLRARGEVRGGLFGREI-VHPRM-- 137

Query: 146 HNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
            +S +   P  +  VY    GL     +K I +AL +   L + +    L++      A 
Sbjct: 138 -SSAETPLPDALTPVYPSTDGLPQPSLRKAIGQALQQA-NLDDTLPPAALERYDLMPFAP 195

Query: 205 AFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260
           A  ++H P          E   PA  R+ +DELLA Q++L   R   +     P+  +G 
Sbjct: 196 AIRLLHAPPPGVSEHDLIERGHPAWRRIKFDELLAQQLSLAAARAARRSIRAEPLPAQGG 255

Query: 261 IAQKILR---NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
               + R    +PF  T +Q+  +++I  D+++   M R+LQGDVGSGKT+VA IA A A
Sbjct: 256 AGGLVARLYAALPFQLTGAQQRVVQEIAADLAKPYPMHRLLQGDVGSGKTVVAAIAAAQA 315

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           +  G Q  +MAP  ILA+QH+  +  + Q   + V  ++G++    RR+A    A G   
Sbjct: 316 IACGAQVALMAPTEILAEQHFRKLVSWLQPLGVNVAWLSGSLTAKARRQAAASAADGSVQ 375

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA------TAPHVLLMTATPI 431
           +++GT AL QD +++++L L IVDEQHRFGV QRL LT+K       T PH L M+ATPI
Sbjct: 376 LVVGTQALIQDHVEFHRLGLSIVDEQHRFGVGQRLALTRKGEAPQGHTVPHQLNMSATPI 435

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL +T   D+D+S I E P GR P+ T ++   R DEVI  +   + EG++AYW+CP 
Sbjct: 436 PRTLAMTFFADLDVSVIDELPPGRTPVVTKLVSDGRRDEVIAHIAHAVREGRQAYWVCPL 495

Query: 492 IEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +EE +    ++ V+ + ++        + ++HGR+   DK +VM +F++G   LL+ATTV
Sbjct: 496 VEESEALQLQTAVDTYETMQAELPDLRLGLVHGRLPQTDKAAVMQAFRDGDIDLLVATTV 555

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           IEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS+ +  RL  
Sbjct: 556 IEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAESVCVLLYQTPLSQVARQRLRA 615

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           +  T DGF IA  DL+QR  GE LG +QSG+     A  E    + E AR+ A  +  + 
Sbjct: 616 MFETSDGFEIARRDLEQRGPGEFLGTRQSGVTLLRFADLESDVGIAEQAREAAAWLRNEY 675

Query: 671 P 671
           P
Sbjct: 676 P 676


>gi|168182572|ref|ZP_02617236.1| ATP-dependent DNA helicase RecG [Clostridium botulinum Bf]
 gi|237795934|ref|YP_002863486.1| ATP-dependent DNA helicase RecG [Clostridium botulinum Ba4 str.
           657]
 gi|182674174|gb|EDT86135.1| ATP-dependent DNA helicase RecG [Clostridium botulinum Bf]
 gi|229262431|gb|ACQ53464.1| ATP-dependent DNA helicase RecG [Clostridium botulinum Ba4 str.
           657]
          Length = 679

 Score =  367 bits (942), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 245/681 (35%), Positives = 387/681 (56%), Gaps = 44/681 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66
           +++P++T +GVG K    L K   C   N    +DLL Y P    FID + + K+  +S+
Sbjct: 3   VYSPITTLKGVGPKTKEQLEK---CMIFN---IMDLLLYFPRDYEFIDNYSKDKL--LSK 54

Query: 67  ERIVTITGYISQHSSFQLQKR-RPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + I+ +     Q  + +   R R  KIL     NDG   I   +F +    +KN F  G 
Sbjct: 55  KVIIKV-----QVENIKRDIRTRTGKILTTIIFNDGEKAIVGSWFNQP--YIKNYFKIGE 107

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           +  + G +K+ +  + + +   I  N  +++V    I   Y L   L  +L  K++   L
Sbjct: 108 EYVLQGSLKEYRGNLTINNAQ-ILKNKCAEEVEERKIIPKYPLKGDLKNNLLIKLVDSVL 166

Query: 180 SRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           + + +   LP W    L++K  F S+ ++   IH P   K+ E    +  RL + ELLA 
Sbjct: 167 TNIDIGENLPIW----LIEKYKFLSLDKSIRTIHKPENQKELE---ESIRRLKFQELLAY 219

Query: 237 QIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            + +  +++  +    GI   V  +I   ++  +PF  T +Q   +++I +D  ++  M 
Sbjct: 220 CLKIAFLKEYLETATEGISFIVSEEI-NNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMN 278

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT++ALI++   ++ G Q V++AP  ILA QHYE   K  ++  + +E++
Sbjct: 279 RLLQGDVGSGKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELL 338

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
            G++  + +++  E++  G+  +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+ 
Sbjct: 339 IGSIKVSSKKEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKML 398

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K  +   L+M+ATPIPR+L L+  GD+D+S I E P GR+ I T  +  +    V    
Sbjct: 399 NKGKSVDTLVMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFA 458

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESV 533
              ++ G++ Y +CP +EEK+E +  SV + +N L E +     IAI+HG+M   +K+++
Sbjct: 459 LKEINNGRQVYIVCPLVEEKEELDLNSVEKLYNDLKEEYFKEVEIAILHGKMKGKEKDTI 518

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FK G  K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CI
Sbjct: 519 MKDFKEGKIKALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCI 578

Query: 594 LLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           L+      KN     R+ ++K++ DGFL+AEEDLK R  GEI G KQ G    L+A    
Sbjct: 579 LIAK---VKNDIIRKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIE 635

Query: 652 HDSLLEIARKDAKHILTQDPD 672
              LL IA  ++K I+  + +
Sbjct: 636 DIHLLRIANMESKKIIDSNNE 656


>gi|226313294|ref|YP_002773188.1| ATP-dependent DNA helicase RecG [Brevibacillus brevis NBRC 100599]
 gi|226096242|dbj|BAH44684.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599]
          Length = 684

 Score =  367 bits (942), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 231/664 (34%), Positives = 382/664 (57%), Gaps = 17/664 (2%)

Query: 11  APLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
           +P+S   GVG++ +  F    IN          DLL Y PS + D   R  ++E+ +   
Sbjct: 7   SPVSLLHGVGEERAKAFAGLGINS-------IGDLLEYFPSRYEDYRVR-DLTEVKDGER 58

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           VT+ G +    S +   +R  ++ +      + +   +     +K+    G++I VTGK 
Sbjct: 59  VTLAGTVYGEPSVRFYGKRKSRLSVKVVMDRVVVTAVWFNQTFVKSRLSPGKEILVTGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            K K +I +     +  + +      +  VY L   ++  L +K I  AL +    +PE 
Sbjct: 119 DKHKLQITVSEMTEV-DSERATKRGELAPVYPLGGDVTHTLLRKTIQLALRQYGKEIPEI 177

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +  D++++        AF+ IH P  A+D      AR R+ ++EL   Q+ +  +RK  +
Sbjct: 178 LPADIVERYRLMPRIHAFHSIHFPENAED---GRQARRRIMFEELFLFQLKMQTLRKINR 234

Query: 249 KEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++  G+ + +  +  ++ ++ +PF  T +Q+  +K+IL DM   + M R+LQGDVGSGKT
Sbjct: 235 QQTEGVALAIPMEEVREFVKGLPFPLTDAQKRVVKEILDDMRAPHAMNRLLQGDVGSGKT 294

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IA+ AAV+AG Q  +M P  ILA+QH + + K   +  I V +++G++    RR+ 
Sbjct: 295 VVAAIALIAAVKAGYQGALMVPTEILAEQHVQSLTKLLSDYGIQVALLSGSLTAKRRREV 354

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           +  +  G   +++GTHAL Q+ + + +L LVI DEQHRFGV+QR  L  K  +P VL MT
Sbjct: 355 IGSLQMGLIDVVVGTHALIQEDVFFSRLGLVITDEQHRFGVEQRRILRNKGLSPDVLFMT 414

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ GD+D+S I + PAGRKPI+T     ++   V+E+++  L +G++AY 
Sbjct: 415 ATPIPRTLAITAFGDMDVSTIDQMPAGRKPIETTWKKHDQFPAVLEQMRDELRKGRQAYV 474

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           ICP IEE ++ + ++ ++    L   F    + ++HGR+   +K++VM +F      +L+
Sbjct: 475 ICPLIEESEKLDVQNAIDVHAQLTHIFPEFGVGLMHGRLPAKEKDAVMQAFLAAEHAVLV 534

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A+ ++I +AE FGLAQLHQLRGRVGRG E S C+L+  P  S+    
Sbjct: 535 STTVVEVGVNVPNATYMVIYDAERFGLAQLHQLRGRVGRGSEQSYCVLIADPK-SEIGKE 593

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ V+  T DGF +++ DL+ R  G+  G KQSG+P+F +A        LE+AR++   +
Sbjct: 594 RMRVMCETTDGFELSQRDLELRGPGDFFGTKQSGLPEFKVADLLSDYKALEVARQETVKL 653

Query: 667 LTQD 670
           + +D
Sbjct: 654 VAED 657


>gi|265767075|ref|ZP_06094904.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_16]
 gi|263253452|gb|EEZ24928.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_16]
          Length = 698

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 234/666 (35%), Positives = 366/666 (54%), Gaps = 21/666 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   + +     DLL+Y P  ++DR     I EI      + + G I
Sbjct: 14  GVGPQKAAVLNKELEIYSLH-----DLLYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGKI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +F   ++R      +DGTG + L++F +  + + N +    +  V GK      RI
Sbjct: 69  LGFETFGEGRQRRLLAHFSDGTGVVDLVWF-QGIKYVTNKYKLHEEYIVFGKPTVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP         ++   ++  Y+    +         +E +    +      L E + 
Sbjct: 128 NVAHPDIDSPADLKLSSMGLQPYYNTTEKMKRSFLNSHAIEKMMATVIGQIQEPLSETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             L+      S+ +A   IH P      E    A+ RL ++EL   Q+ +L   K  +++
Sbjct: 188 PKLIADHHLMSLTDALRNIHFPSNP---ELLRKAQYRLKFEELFYVQLNILRYAKDRQRK 244

Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
             G      G+I      +N+PF  T +Q+  +++I QD+    +M R+LQGDVGSGKTL
Sbjct: 245 YRGYVFETVGEIFNTFYSKNLPFELTGAQKRVLREIRQDVGCGKQMNRLLQGDVGSGKTL 304

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL++M  A++ G QA +MAP  ILA QHY+ I++      + VE++TG++    R   L
Sbjct: 305 VALMSMLMALDNGFQACMMAPTEILANQHYDTIRELLFGMDVRVELLTGSVKGKKREAIL 364

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMT 427
             +  G  HI+IGTHA+ +D++ +  L L ++DEQHRFGV QR +L  K+   PHVL+MT
Sbjct: 365 AGLLTGDVHILIGTHAVIEDTVNFASLGLAVIDEQHRFGVAQRARLWSKSVQPPHVLVMT 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   ++  + EG++ Y 
Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRRESLYRSVRKQIEEGRQVYI 484

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ M  F +G  ++++
Sbjct: 485 VYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFISGDAQIMV 544

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+    L++ +  
Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLTEETRK 604

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665
           RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R  A+ 
Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVRTIAEE 664

Query: 666 ILTQDP 671
           I   DP
Sbjct: 665 ITDADP 670


>gi|298480238|ref|ZP_06998436.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D22]
 gi|298273519|gb|EFI15082.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D22]
          Length = 698

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 241/677 (35%), Positives = 366/677 (54%), Gaps = 43/677 (6%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   + +     DL++Y P  +IDR     I EI      + + G I
Sbjct: 14  GVGPQKAAVLNKELEIYSLH-----DLIYYFPYKYIDRSRIYYIHEIDGNMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F     +L         I + GK      RI
Sbjct: 69  LGFETIGEGRQRRLTAHFSDGTGVVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP         ++   ++  Y+    +         +E +    +      LPE + 
Sbjct: 128 NVAHPDVDKPEDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP-----ARERLAYDELLAGQIALLLMRK 245
             LL +     + EA   IH P        T+P     A+ RL ++EL   Q+ +L   K
Sbjct: 188 SKLLAEHHLMPLTEALRNIHFP--------TNPDVLRRAQYRLKFEELFYVQLNILRYAK 239

Query: 246 QFKKEIGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
             +K         G I +K+         +N+PF  T +Q+  +K+I  D+    +M R+
Sbjct: 240 DRQKR------YRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRL 293

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++TG
Sbjct: 294 LQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTG 353

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++    R   L  +  G   I+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L  K
Sbjct: 354 SIKGKRREAILTGLLTGDVKILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSK 413

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   ++
Sbjct: 414 NVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRSVR 473

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMD 535
             + EG++ Y + P I+E ++ + +++ E +  + E F   ++  +HG+M   +K+  M 
Sbjct: 474 KQIEEGRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPKCTVCKVHGKMKPAEKDEQMQ 533

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+
Sbjct: 534 LFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILV 593

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDS 654
            +  L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       
Sbjct: 594 TNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRDGQ 653

Query: 655 LLEIARKDAKHILTQDP 671
           LL+  R  A+ I+ QDP
Sbjct: 654 LLQYVRAIAESIVEQDP 670


>gi|253570321|ref|ZP_04847730.1| ATP-dependent DNA helicase recG [Bacteroides sp. 1_1_6]
 gi|298384865|ref|ZP_06994424.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 1_1_14]
 gi|251840702|gb|EES68784.1| ATP-dependent DNA helicase recG [Bacteroides sp. 1_1_6]
 gi|298262009|gb|EFI04874.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 1_1_14]
          Length = 698

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 237/670 (35%), Positives = 362/670 (54%), Gaps = 21/670 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +           DL++Y P  ++DR     I EI      + + G I
Sbjct: 14  GVGPQKAAVLNKELEI-----YSLYDLIYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F     +L         I + GK      RI
Sbjct: 69  LGFETIGEGRQRRLTAHFSDGTGIVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP     +   ++   ++  Y+    +         +E +    +      LPE + 
Sbjct: 128 NVAHPDIDKPDDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             +L       + EA   IH P           A+ RL ++EL   Q+ +L   K  ++ 
Sbjct: 188 PKILSDHHLMPLTEALRNIHFPTNPDSLR---RAQYRLKFEELFYVQLNILRYAKDRQRR 244

Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
             G      G +      +N+PF  T +Q+  +K+I  D+    +M R+LQGDVGSGKTL
Sbjct: 245 YRGYIFERVGDVFNTFYSQNLPFQLTGAQKRVLKEIRNDVGSGRQMNRLLQGDVGSGKTL 304

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++TG++    R   L
Sbjct: 305 VALMSMLLALDNGFQACMMAPTEILANQHYETIKELLFGMDIRVELLTGSIKGKKREAIL 364

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427
             +  G   I+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L T+    PHVL+MT
Sbjct: 365 TGLLTGDVKILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRARLWTKNIQPPHVLVMT 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   ++  + EG++ Y 
Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRAVRKQIEEGRQVYI 484

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P I+E ++ + +++ E +  + E F   ++A +HG+M   +K+  M  F +G  ++++
Sbjct: 485 VYPLIKESEKIDLKNLEEGYQHILEEFPGCTVAKVHGKMKSAEKDEQMQLFISGQAQIMV 544

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ +  L++++  
Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVTNYKLTEDTRK 604

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665
           RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R  A+ 
Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIANLARDGQLLQYVRSIAED 664

Query: 666 ILTQDPDLTS 675
           I+  DP   S
Sbjct: 665 IVDNDPSAQS 674


>gi|18310713|ref|NP_562647.1| ATP-dependent DNA helicase RecG [Clostridium perfringens str. 13]
 gi|18145394|dbj|BAB81437.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13]
          Length = 690

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 246/678 (36%), Positives = 380/678 (56%), Gaps = 46/678 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           ++  +   +GVG K    L+K+           +DLL Y P     R Y     +IS   
Sbjct: 16  IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFP-----RDYEFLNDDIS--- 61

Query: 69  IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEML---------KNVF 117
              + G IS   +    K + Y   I   +G    T+ F Y   +++         K  F
Sbjct: 62  ---LNGDISDEKAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQPYIKRNF 118

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G +  + GK KK+ N + +++P       ++ N   I  +Y+L  GL+  +  K+I E
Sbjct: 119 ILGNEYNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINE 175

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
            L  + ++ E + +++++K    S+ +A   IH P    + +    A  RL + EL    
Sbjct: 176 ILKNM-IIKENLPEEIVKKYKLISLDKAIRSIHFPEGRGELQ---SAINRLKFQELFTYS 231

Query: 238 IALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + +++M+   KKE  GI   +   + + +  ++P++ T +Q   +++IL D  +   M R
Sbjct: 232 LKIIMMKAHIKKENSGISFKM-SPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNR 290

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVALI+M      G Q V+MAP  ILA QHY   KKY +   + +E++T
Sbjct: 291 LVQGDVGSGKTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLEQFGVDIELLT 350

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+  +  +++  E+IA G+  ++IGTHAL QD ++   L LV+ DEQHRFGV+QR +L  
Sbjct: 351 GSTKEKEKKRIKEKIASGKGIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLIN 410

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERL 475
           K     VL+MTATPIPRTL L    D+DIS I E P GRKPI T+++ +N R+      L
Sbjct: 411 KNKRADVLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFAL 470

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533
           K V  +G++ Y + P IEE ++ N  SV + +  L         I I+HG+M+  DK+ +
Sbjct: 471 KEV-EKGRQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDIRIEILHGKMAGKDKDKI 529

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +++FKNG  K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE  S CI
Sbjct: 530 INTFKNGEIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCI 589

Query: 594 LLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           L+ +   +KN  T  R+ ++  + DGF IAEEDLK R  GE+ G++Q G   F++A    
Sbjct: 590 LIAN---TKNDITRRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVD 646

Query: 652 HDSLLEIARKDAKHILTQ 669
             ++L+ A  +AK I+  
Sbjct: 647 DINILKCANHEAKLIVNN 664


>gi|255690507|ref|ZP_05414182.1| ATP-dependent DNA helicase RecG [Bacteroides finegoldii DSM 17565]
 gi|260623959|gb|EEX46830.1| ATP-dependent DNA helicase RecG [Bacteroides finegoldii DSM 17565]
          Length = 698

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 236/665 (35%), Positives = 361/665 (54%), Gaps = 21/665 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   + +     DL++Y P  ++DR     I EI      + + G I
Sbjct: 14  GVGPQRAAILNKELGIYSLH-----DLIYYFPYKYVDRSRVYYIHEIDGNMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F     +L         I + GK      RI
Sbjct: 69  LGFEAIGEGRQRRLTAHFSDGTGVVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP     +   ++   ++  Y+    +         +E +    +      LPE + 
Sbjct: 128 NVAHPDIDKSDELKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             LL +     + EA   IH P      +    A+ RL ++EL   Q+ +L   K  ++ 
Sbjct: 188 PKLLAEHHLMPLTEALRNIHFPANP---DLLRRAQYRLKFEELFYVQLNILRYAKDRQRR 244

Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
             G      G +      +N+PF  T +Q+  +K+I  D+    +M R+LQGDVGSGKTL
Sbjct: 245 YRGYVFEKVGDVFNTFYAKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRLLQGDVGSGKTL 304

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++TG++    R   L
Sbjct: 305 VALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTGSIKGKKREAIL 364

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMT 427
             +  G  HI+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L  K    PHVL+MT
Sbjct: 365 SGLLTGDVHILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSKNNQPPHVLVMT 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S I E P GRKPI TV    NR + +   ++  + EG++ Y 
Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTVHQFDNRRESIYRSVQKQIDEGRQVYI 484

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P I+E ++ + +++ E +  + E F    +  +HG+M   +K+  M  F +G  ++++
Sbjct: 485 VYPLIKESEKIDLKNLEEGYQHILEEFPKCKVCKVHGKMKPAEKDEQMQLFVSGEAQIMV 544

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ +  L++++  
Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVTNYKLTEDTRK 604

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665
           RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R  A+ 
Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQYVRTIAEE 664

Query: 666 ILTQD 670
           I+  D
Sbjct: 665 IVEHD 669


>gi|307564986|ref|ZP_07627503.1| ATP-dependent DNA helicase RecG [Prevotella amnii CRIS 21A-A]
 gi|307346299|gb|EFN91619.1| ATP-dependent DNA helicase RecG [Prevotella amnii CRIS 21A-A]
          Length = 699

 Score =  367 bits (941), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 245/674 (36%), Positives = 387/674 (57%), Gaps = 30/674 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG +    LSK +         + DLL Y+P  +IDR      SE+S +   V + G I
Sbjct: 14  GVGPRRKDILSKELGINT-----YRDLLEYYPYKYIDRTKVYLTSELSLDMPFVQLRGKI 68

Query: 77  SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
                + + KR+   +   +DG G   L++F     + KN +  G++  V GK      R
Sbjct: 69  LSFEEYDMGKRKKRIVAHFSDGHGVCDLVWFNGIQYIYKN-YKIGKEYIVFGKPGFYNGR 127

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVY---------SLPTGLSVDLFKKIIVEALSRLP-VL 185
               HP     +   +N   ++  Y         SL +     L K +I + +S L   L
Sbjct: 128 FQFTHPDIDDASQLQLNDMGMQPFYVTTEKMKNASLSSRAIEKLTKTLISKLVSPLEETL 187

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           P +I   L    +  S  EAF  IH P+   D   T  AR RL ++EL   Q+ ++    
Sbjct: 188 PPFIISHL----NLISRDEAFRKIHYPKTVND---TQRARMRLKFEELFYVQLNIMRYAS 240

Query: 246 QFKKEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           + +++  G      G+        N+PF+ T +Q+  IK+I  DM    +M R+LQGDVG
Sbjct: 241 EHRRKYRGYEFRRIGEQFNWFYHNNLPFALTNAQKRVIKEIRADMGSGRQMNRLLQGDVG 300

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA ++M   ++ G QA  +AP  ILA+QH + I+++  +  + VE++TG +    
Sbjct: 301 SGKTLVAFMSMLIGIDNGFQACFVAPTEILAEQHLQTIREFLHDMNLNVELLTGIVKGKR 360

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PH 422
           R+  LE + +G  +I++GTHA+F+D++ + KL + ++DEQHRFGV QR +L  K+   PH
Sbjct: 361 RKSVLEGLVNGTINILVGTHAIFEDNVHFQKLGIAVIDEQHRFGVAQRAQLWAKSKQPPH 420

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    +++  +   ++  +S+G
Sbjct: 421 ILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIETIHRYDDQMTSLYHGIRQQVSKG 480

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++ Y + P I+E ++S+ +++ E FN+L E F    ++ IHG+M D +KE  M  F  G 
Sbjct: 481 RQVYIVFPLIKESEKSDLKNLEEGFNTLLEVFPDYHLSKIHGKMKDKEKEEEMQKFVLGQ 540

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L+ATTVIEVG++V +AS++II +A+ FGL+QLHQLRGRVGRG + S C+L+ +  L+
Sbjct: 541 TQILVATTVIEVGVNVPNASVMIILDAQRFGLSQLHQLRGRVGRGADQSYCVLVTNRKLT 600

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIAR 660
           K +  R++V+ +T DGF I+E DLK R  G++ G +QSG+   L IA       L+++AR
Sbjct: 601 KETKKRINVICDTNDGFAISEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLVQLAR 660

Query: 661 KDAKHILTQDPDLT 674
            +A+ I+  DP+ +
Sbjct: 661 DEAQKIIESDPECS 674


>gi|332638230|ref|ZP_08417093.1| ATP-dependent DNA helicase RecG [Weissella cibaria KACC 11862]
          Length = 678

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 223/648 (34%), Positives = 368/648 (56%), Gaps = 36/648 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL Y+P  + D   +   +E  +   VT  G I+     + F  +K R  +++ +   T
Sbjct: 32  DLLGYYPMRYNDLAMKTP-AETQDGEKVTFKGVITSPPVVNRFGYKKTRTSFRLTVEHDT 90

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
               ++ F+ +  + KN+   G+++ V G   K   R  M     +  N  D     +EA
Sbjct: 91  ---IMVSFFNQPWVGKNLEL-GQEVAVHGTYDK--TRQGMSGIKLMSRNGDDE----MEA 140

Query: 159 VYSLPTGLSVDLFKKIIVEALS------RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
           VY     +     K +I++AL       R  ++P ++       ++   +    + +   
Sbjct: 141 VYPSSKEIKAKTIKDLIIQALGKYGELLRTDIVPAYL-------RTRYKLMNHHDTVFGM 193

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
               D +  + AR   +++E    Q+ L +++   +   G  IN      +  +  +PF 
Sbjct: 194 HAPTDGQVATEARRSASFEEFFVFQMRLQVIKSMDRDNRGRSINFNNDELKAFIATLPFE 253

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T +Q+  + +I++DM +   M R+LQGDVGSGKT+VA +AM AA+ AG QA +MAP  I
Sbjct: 254 LTDAQKRVVNEIVRDMRRPIHMNRLLQGDVGSGKTVVAALAMYAAITAGMQATLMAPTEI 313

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LAQQH + I  +    ++ VE++TG+   A RR+ LE +A+G+  I+IGTHAL Q  I +
Sbjct: 314 LAQQHAKTIGNFFDPDKVRVELLTGSTKTAARRQILEDVANGEVDILIGTHALIQPDIAF 373

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             L L ++DEQHRFGVQQR  L +    P +L MTATPIPRTL +T+ G++D+S I + P
Sbjct: 374 RNLGLAVIDEQHRFGVQQRATLREIGMNPDILAMTATPIPRTLAITAYGEMDVSIIDQLP 433

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           AGRK IKT  +  N +++ I  ++  L EG +AY + P IEE +  + ++    +  L E
Sbjct: 434 AGRKQIKTYWLRSNEMEKTIAFIRSQLQEGAQAYVVTPLIEESETLDVQNAEAVYAELSE 493

Query: 513 HF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           +F  T  + ++HGR+S+ +KE VM +FK    ++L++TTVIEVG+DV ++++++I +A+ 
Sbjct: 494 YFAPTYRVGLLHGRLSNQEKEDVMAAFKANEFQVLVSTTVIEVGVDVPNSTVMLILDADR 553

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FGL+QLHQLRGRVGRG   S   L+  P  ++    R+  +  T DGF++A++DL+ R  
Sbjct: 554 FGLSQLHQLRGRVGRGSRQSYTFLISDPK-TQYGIDRMEAMVATTDGFVLAQKDLELRGA 612

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT-----QDPDL 673
           G+ILG +QSG+P+F +  P    +++ +A+++A  I++     +DP+L
Sbjct: 613 GDILGNRQSGVPEFRVGDPIADLAMMTVAQEEAIEIVSKPDWDKDPEL 660


>gi|163845859|ref|YP_001633903.1| ATP-dependent DNA helicase RecG [Chloroflexus aurantiacus J-10-fl]
 gi|222523571|ref|YP_002568041.1| ATP-dependent DNA helicase RecG [Chloroflexus sp. Y-400-fl]
 gi|163667148|gb|ABY33514.1| ATP-dependent DNA helicase RecG [Chloroflexus aurantiacus J-10-fl]
 gi|222447450|gb|ACM51716.1| ATP-dependent DNA helicase RecG [Chloroflexus sp. Y-400-fl]
          Length = 872

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 237/693 (34%), Positives = 371/693 (53%), Gaps = 75/693 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL++ P  + D   R  ISE+      T+ G ++   +     +   ++ ++D TG I 
Sbjct: 170 DLLYHFPRRYDDVRNRRSISELQVGAEETVIGEVTDVRTIGAGPKLRVRVEVSDETGSIE 229

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---------IFHNSQDVNF 153
            +FF ++   +      G+ I ++GK+     +     P +         + H  + V  
Sbjct: 230 AIFFNQR--WIAQQIRVGQTIALSGKVTTFGGKRQFSSPRWERYTPDPDALLHTGRLV-- 285

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
                ++ L  GL  +  ++ I + +  + P + + +    LQ      + EA   IH P
Sbjct: 286 ----PIHPLTQGLHENQVRRFIKQVVDTMAPQVEDHLPPVRLQHARLLPLGEALAQIHFP 341

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
               D    + AR RL +DE L  QI +L  ++ +++E+G    ++ ++  ++ R +PF 
Sbjct: 342 ---TDHTSLAAARRRLGFDEFLFIQIGVLQRKRLWQQEMGYAFTIDSQVHAELQRLLPFQ 398

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T +Q+ AI++I  D+ + + M R+LQGDVGSGKT+VA  A+  AV  G Q  +MAP  I
Sbjct: 399 LTTAQQRAIEEIFSDLRRPSPMARLLQGDVGSGKTVVAAAALLQAVANGFQGALMAPTEI 458

Query: 333 LAQQHYEFIKKY---------------------------------TQNTQII-------- 351
           LA+QH + +K+                                   Q  +II        
Sbjct: 459 LAEQHAKNLKQLLSRVRVPRKTTSATASSAYQQADWRSLLDPEEAAQLAEIISILGMSPE 518

Query: 352 ---------VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
                    V ++TG++    RR+ LE IA G+  +++GTHAL  +++Q+ +L LV+VDE
Sbjct: 519 EDMGGHGVRVALLTGSLGTRERRRVLEGIARGEIDLVVGTHALITETVQFAQLGLVVVDE 578

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           QHRFGV+QRL+L  K   PH+L+MTATPIPRTL +T  GD+D+S + E+P GR+ I+T  
Sbjct: 579 QHRFGVEQRLRLKNKGYNPHMLVMTATPIPRTLTMTIYGDLDVSVLDERPPGRQEIRTKR 638

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTS-SIAI 520
           +      +V   ++  ++EG++ Y ICP +EE ++ +  S  E +  L HE F    +A+
Sbjct: 639 VGRAERAKVYRHIRKQVAEGRQVYVICPLVEESEKLDLPSAEEMYERLQHEVFPDLRVAL 698

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG++S  +K+ VM +F++    +L+AT VIEVGIDV +A+ I+IE AE FGLAQLHQ R
Sbjct: 699 LHGKLSAREKDDVMRAFRDHQYDILVATAVIEVGIDVPNATTIVIEGAERFGLAQLHQFR 758

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG   S CIL+     ++ S  RL+ L+ T DGF +AE DL+ R  GE  G +QSG
Sbjct: 759 GRVGRGHHQSYCILISDSD-NQQSKERLAALEQTTDGFKLAEIDLQLRGPGEFFGTRQSG 817

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            P   +AQ +    LL  AR  A  IL  DP+L
Sbjct: 818 TPDLKMAQ-QGDTRLLAEARALADAILADDPEL 849


>gi|172057921|ref|YP_001814381.1| ATP-dependent DNA helicase RecG [Exiguobacterium sibiricum 255-15]
 gi|171990442|gb|ACB61364.1| ATP-dependent DNA helicase RecG [Exiguobacterium sibiricum 255-15]
          Length = 676

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 233/667 (34%), Positives = 360/667 (53%), Gaps = 33/667 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L ++      +     D+L + P  + D      ++E   E  V  
Sbjct: 7   VTALKGVGRDLARKLEEM------DMLTIADVLEHVPFRY-DDFVTGSLTEAIHEDKVKF 59

Query: 73  TGYISQHSSFQL----QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           TG +   +  +     + R  +++L+ D    +T+  F R     K+    G ++TV+GK
Sbjct: 60  TGQVQSEALVRYYGKGKNRLTFRLLVEDRYS-VTVTMFNRA--FYKDQLKLGEEVTVSGK 116

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEA----VYSLPTGLSVDLFKKIIVEALSRLPV 184
                        H +  ++ ++ F  IE     VYSL   + +  F++++  A +    
Sbjct: 117 WDL----------HRMTISATELQFGAIEGELTPVYSLKGDMRMKTFRRVVELAFAECEA 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E I +++ +             +H P   +D    + AR    Y+E L  Q+ L  +R
Sbjct: 167 LEERIPENIRKTYRLLDRMTMLRRLHFPTTRQDL---TTARRSYVYEECLYFQLKLQTLR 223

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              +K  G+ + +  +   + +  +PF  T +Q+    +IL DM +  RM R+LQGDVGS
Sbjct: 224 LGKRKGQGLALPLFQQEIDQFIATLPFPLTGAQKRVTDEILADMHRPERMNRLLQGDVGS 283

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA IA+ AAV A  Q  +M P  ILA+QH   +    +   I V ++T ++    R
Sbjct: 284 GKTVVAAIALFAAVRANKQGALMVPTEILAEQHASSLAPLLEPLGIKVGLLTSSVKGKSR 343

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
              LE +  G+  +++GTHAL QD++ +  L LVI DEQHRFGV+QR +L  KA    VL
Sbjct: 344 LLLLEALRQGKIDVLVGTHALIQDTVVFKDLHLVITDEQHRFGVEQRKRLRAKAEQADVL 403

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            MTATPIPRTL ++  GD+D+S I E PAGRK I+T      +ID V   ++  L  G +
Sbjct: 404 YMTATPIPRTLAISVFGDMDVSIIDEMPAGRKEIETYWAKPEQIDRVFGFVEKELLLGHQ 463

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           AY I P IEE +  + ++ +E    L E F T  + ++HGR+S  +K+ VM +FK    +
Sbjct: 464 AYVITPLIEESESLDVQNAIELHVLLTERFSTHQVGLMHGRLSSSEKDDVMQAFKENQVQ 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTV+EVG++V +ASII+I +AE FGLAQLHQLRGRVGRG   S CIL+  P  S  
Sbjct: 524 VLVSTTVVEVGVNVPNASIIVIYDAERFGLAQLHQLRGRVGRGATQSFCILIADPS-SDT 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+  +  T DGF +AE+DL+ R  G   G +QSG+P+F++  P L   ++E AR DA
Sbjct: 583 GKERIKTMTETNDGFKLAEKDLELRGAGNFFGTEQSGLPRFILTDPALDIQVMETARNDA 642

Query: 664 KHILTQD 670
             +L  D
Sbjct: 643 VRLLRSD 649


>gi|295102722|emb|CBL00267.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii L2-6]
          Length = 686

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 229/645 (35%), Positives = 348/645 (53%), Gaps = 30/645 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID--RHYRPKISEISEERI 69
           P+   +GVG K +    K+            DLL ++P  ++D  + Y    +    E +
Sbjct: 14  PVRYLKGVGPKTAERFEKL------GILTLSDLLCHYPRRYLDFSKPYSIAEAPADTECV 67

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF-----YRKTEMLKNVFFEGRKIT 124
           V    +           RR  +I   D    + + +F      +K E+ +  +F+G    
Sbjct: 68  VKAEVFAKPGGRILPGGRRMERITAGDDVSSLEITWFNNPYAAQKLELGQEYYFQG---I 124

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           VTG + + +    MV+P  +  ++Q  + P  EAVY    GL+     K + + L    +
Sbjct: 125 VTGGMLRRQ----MVNPQ-VRTDAQVKSSPF-EAVYPQTEGLTSSAIAKCVRQLLPHAEL 178

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +  ++L+K    S A+A   IH P      E    AR RL Y+ELL  Q+ +  M+
Sbjct: 179 LPDPLPPEMLKKYRLLSKADAVRAIHCPATE---EEAFAARRRLIYEELLVLQLGIGRMK 235

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
                  G P+            ++PFSPT +Q  A+++IL DMS +  M R+LQGDVGS
Sbjct: 236 NHGAASTGAPMKKAD--VSPFWESLPFSPTGAQRRAVEEILTDMSGETSMNRLLQGDVGS 293

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA  A+ A + AG QA ++AP  ILA QH E + +      +   ++TG M  A R
Sbjct: 294 GKTLVAAAAIWACIRAGYQAALLAPTEILASQHAENLNRLLSPFGMRAALLTGGMKAAAR 353

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R  L  I   +A +I+GTHA+  + +++ +L L +VDEQHRFGV+QR  L +KA  PH+L
Sbjct: 354 RTTLAAIRDDEADLIVGTHAILSEGVEFARLGLAVVDEQHRFGVRQRGLLAEKAANPHLL 413

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPRTL L   GD+DIS + E P GRKP+KT  I   +  ++   L   +  G++
Sbjct: 414 VMSATPIPRTLGLLMYGDLDISILDELPPGRKPVKTRCITGKKRADLYGFLDREIDSGRQ 473

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP IE+   S   +V   +  + + +     + ++HG++   +K  VMD FK+G  
Sbjct: 474 VYIVCPAIEDAGGSGLNAVKSYYEDIAKAYLPDRRVGLMHGKLKPKEKAEVMDDFKSGRL 533

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
             L++TTVIEVG+DV +A++++IENAE +GL+ LHQLRGRVGRG   S C L+     S+
Sbjct: 534 DALVSTTVIEVGVDVPNATVMVIENAERYGLSALHQLRGRVGRGAAESWCFLVSD-NASE 592

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           +   RL  L +T DGF +A+ DL+ R  G+  G +Q G+P   IA
Sbjct: 593 SVQKRLKFLCSTSDGFAVAQYDLETRGPGDFFGSRQHGLPTLQIA 637


>gi|168214207|ref|ZP_02639832.1| ATP-dependent DNA helicase RecG [Clostridium perfringens CPE str.
           F4969]
 gi|170714286|gb|EDT26468.1| ATP-dependent DNA helicase RecG [Clostridium perfringens CPE str.
           F4969]
          Length = 690

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 246/678 (36%), Positives = 380/678 (56%), Gaps = 46/678 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           ++  +   +GVG K    L+K+           +DLL Y P     R Y     +IS   
Sbjct: 16  IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFP-----RDYEFLNDDIS--- 61

Query: 69  IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEML---------KNVF 117
              + G IS   +    K + Y   I   +G    T+ F Y   +++         K  F
Sbjct: 62  ---LNGDISDEKAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQPYIKRNF 118

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G +  + GK KK+ N + +++P       ++ N   I  +Y+L  GL+  +  K+I E
Sbjct: 119 ILGNEYNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINE 175

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
            L  + ++ E + +++++K    S+ +A   IH P    + +    A  RL + EL    
Sbjct: 176 ILKNM-IIKENLPEEIVKKYKLISLDKAIRSIHFPEGRGELQ---SAINRLKFQELFTYS 231

Query: 238 IALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + +++M+   KKE  GI   +   + + +  ++P++ T +Q   +++IL D  +   M R
Sbjct: 232 LKIIMMKAHIKKENSGISFKM-SPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNR 290

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVALI+M      G Q V+MAP  ILA QHY   KKY +   + +E++T
Sbjct: 291 LVQGDVGSGKTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLEQFGVDIELLT 350

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+  +  +++  E+IA G+  ++IGTHAL QD ++   L LV+ DEQHRFGV+QR +L  
Sbjct: 351 GSTKEKEKKRIKEKIASGKGIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLIN 410

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERL 475
           K     VL+MTATPIPRTL L    D+DIS I E P GRKPI T+++ +N R+      L
Sbjct: 411 KNKRADVLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFAL 470

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533
           K V  +G++ Y + P IEE ++ N  SV + +  L         I I+HG+MS  DK+ +
Sbjct: 471 KEV-EKGRQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMSGKDKDKI 529

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +++FKNG  K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRG+  S CI
Sbjct: 530 INTFKNGEIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGKHKSYCI 589

Query: 594 LLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           L+ +   +KN  T  R+ ++  + DGF IAEEDLK R  GE+ G++Q G   F++A    
Sbjct: 590 LIAN---TKNDITRRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVD 646

Query: 652 HDSLLEIARKDAKHILTQ 669
             ++L+ A  +AK I+  
Sbjct: 647 DINILKCANHEAKLIVNN 664


>gi|293368690|ref|ZP_06615296.1| ATP-dependent DNA helicase RecG [Bacteroides ovatus SD CMC 3f]
 gi|292636231|gb|EFF54717.1| ATP-dependent DNA helicase RecG [Bacteroides ovatus SD CMC 3f]
          Length = 698

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 241/677 (35%), Positives = 366/677 (54%), Gaps = 43/677 (6%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   + +     DL++Y P  +IDR     I EI      + + G I
Sbjct: 14  GVGPQKAAVLNKELEIYSLH-----DLIYYFPYKYIDRSRIYYIHEIDGNMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F     +L         I + GK      RI
Sbjct: 69  LGFETIGEGRQRRLTAHFSDGTGVVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP         ++   ++  Y+    +         +E +    +      LPE + 
Sbjct: 128 NVAHPDVDKPEDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP-----ARERLAYDELLAGQIALLLMRK 245
             LL +     + EA   IH P        T+P     A+ RL ++EL   Q+ +L   K
Sbjct: 188 SKLLAEHHLMPLTEALRNIHFP--------TNPDVLRRAQYRLKFEELFYVQLNILRYAK 239

Query: 246 QFKKEIGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
             +K         G I +K+         +N+PF  T +Q+  +K+I  D+    +M R+
Sbjct: 240 DRQKR------YRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRL 293

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++TG
Sbjct: 294 LQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTG 353

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++    R   L  +  G   I+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L  K
Sbjct: 354 SIKGKRREAILTGLLTGDVKILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSK 413

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   ++
Sbjct: 414 NVQPPHVLVMTATPIPRTLAMTLYGDLDVSIIDELPPGRKPITTIHQFDNRRESMYRSVR 473

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMD 535
             + EG++ Y + P I+E ++ + +++ E +  + E F   ++  +HG+M   +K+  M 
Sbjct: 474 KQIEEGRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPKCTVCKVHGKMKPAEKDEQMQ 533

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+
Sbjct: 534 LFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILV 593

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDS 654
            +  L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       
Sbjct: 594 TNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRDGQ 653

Query: 655 LLEIARKDAKHILTQDP 671
           LL+  R  A+ I+ QDP
Sbjct: 654 LLQYVRAIAESIVEQDP 670


>gi|242373518|ref|ZP_04819092.1| DNA helicase RecG [Staphylococcus epidermidis M23864:W1]
 gi|242348881|gb|EES40483.1| DNA helicase RecG [Staphylococcus epidermidis M23864:W1]
          Length = 682

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 221/660 (33%), Positives = 370/660 (56%), Gaps = 22/660 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VT+
Sbjct: 13  LDKIKGIGPKRLTLLEEL------NIHTVEDLVLYLPTRYEDNTV-IDLNQAEDQSTVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +    +     R   K+ ++     I +   F+ +  + K +   G  +TV GK  +
Sbjct: 66  QGEVYSTPAVAFFGRNKSKLTVHIMVNNIAVKCVFFNQPYLKKKIELHG-TVTVKGKWNR 124

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
            K  I   + + +F N Q     + +E VY +  G+     +  I +AL  + +  EW+ 
Sbjct: 125 AKQEI---NGNRMFFNEQTTQDDVQLEPVYRIKEGIKQKQIRDNIRQALEDVTI-HEWLS 180

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKK 249
            DL +K    ++      +H+P   KD +    AR   A+ EL   ++ +  L R +   
Sbjct: 181 DDLREKYKLETLEYTLRTLHHP---KDKQSLLRARRTYAFTELFMFELRMQWLNRLEKTS 237

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           +  I I+ +    ++ + ++PF  T +Q++++ +I +D+    RM R+LQGDVGSGKT+V
Sbjct: 238 DEAIEIDYDINKVKEFIDHLPFELTDAQKTSVNEIFRDLKAPIRMHRLLQGDVGSGKTVV 297

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A I M A   AG Q+ +M P  ILA+QH E + +  ++T + V ++TG++    RR  LE
Sbjct: 298 AAICMYALKTAGYQSALMVPTEILAEQHAESLIELFRDT-MNVALLTGSVKGKKRRILLE 356

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           ++ +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MTAT
Sbjct: 357 QLENGSIDCLIGTHALIQDDVIFENVGLVITDEQHRFGVNQRQSLREKGAMTNVLFMTAT 416

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL ++  G++D+S I + P GRKPI T      R D+V+ ++   L +G++AY IC
Sbjct: 417 PIPRTLAISVFGEMDVSSIKQLPKGRKPIITSWAKHERYDQVLTQMTSELRKGRQAYVIC 476

Query: 490 PQIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           P IE  +   + ++VV  + SL +++ T  + ++HG+++  +K+ VM  F N    +L++
Sbjct: 477 PLIESSEHLEDVQNVVALYESLQQYYGTEKVGLLHGKLTAEEKDDVMQRFSNHEIDILVS 536

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R
Sbjct: 537 TTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIER 595

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           ++++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 596 MTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANIVEDYRMLEVARDEAAQLI 655


>gi|229547467|ref|ZP_04436192.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1322]
 gi|256854780|ref|ZP_05560144.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T8]
 gi|229307391|gb|EEN73378.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1322]
 gi|256710340|gb|EEU25384.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T8]
 gi|315028368|gb|EFT40300.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX4000]
          Length = 678

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 220/628 (35%), Positives = 359/628 (57%), Gaps = 20/628 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R  ++++     
Sbjct: 31  DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    LK+      +I V GK    +  +  +       +++D   P+   
Sbjct: 90  --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              +     V L +    E  S   ++ E +  DLL+K    S  EA   +H P   ++ 
Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LIEEILPNDLLEKYRLMSRKEAMWAMHFPSNPEE- 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
             +  A+ R+ ++E    Q+ +  ++KQ K E  G+ I  +    +   + +PF  T +Q
Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH
Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L L
Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P
Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I+T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++  
Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG+M + +K+ +M  FK+   +LL++TTVIEVG++V +A++++I +A+ FGLAQ
Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
            +QSG+P+F +       ++LE+AR++A
Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645


>gi|57866670|ref|YP_188376.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis RP62A]
 gi|81674916|sp|Q5HPW4|RECG_STAEQ RecName: Full=ATP-dependent DNA helicase recG
 gi|57637328|gb|AAW54116.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis RP62A]
          Length = 682

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 223/659 (33%), Positives = 363/659 (55%), Gaps = 20/659 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VT+
Sbjct: 13  LDKIKGIGPKRLALLEEL------NIKSVEDLVLYLPTRYEDNTV-IDLNQADDQATVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +    +     R   K+ ++     I +   +     LK        +T+ GK  + 
Sbjct: 66  QGEVYSSPTVAFFGRNKSKLTVHLMINHIAVKCVFFNQPYLKKKLELNSIVTIKGKWNRN 125

Query: 133 KNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
           K  I   + + IF N Q +     +E VY +  G+     +  I +ALS + +  EW+  
Sbjct: 126 KQEI---NGNRIFFNDQKNQEDAHLEPVYRVKEGIKQKQLRDNIRQALSDVTI-HEWLTD 181

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKE 250
           DL +K    ++A     +H+P   ++      AR   A+ EL   ++ +  L R +   +
Sbjct: 182 DLREKYKLETLAYTIQTLHHPIDKQNL---LRARRTYAFTELFMFELRMQWLNRLEKTSD 238

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             I IN +    ++ + ++PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT+VA
Sbjct: 239 EAIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKTIVA 298

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            I M A   AG Q+ +M P  ILA+QH E + +   NT + V ++TG++    RR  LE+
Sbjct: 299 AICMYALKTAGYQSALMVPTEILAEQHAESLMQLFGNT-MNVALLTGSVKGKKRRLLLEQ 357

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           + +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MTATP
Sbjct: 358 LENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMTATP 417

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL ++  G++D+S I + P GRKPIKT      + D+V+ ++   L +G++AY ICP
Sbjct: 418 IPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICP 477

Query: 491 QIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            IE  +   + ++VVE + SL   +    + ++HG+M+  DK+ VM  F      +L++T
Sbjct: 478 LIESSEHLEDVQNVVELYESLQSDYGNEKVGLLHGKMTAEDKDQVMQKFSEHEIDILVST 537

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R+
Sbjct: 538 TVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERM 596

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 597 TIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAELI 655


>gi|302344911|ref|YP_003813264.1| ATP-dependent DNA helicase RecG [Prevotella melaninogenica ATCC
           25845]
 gi|302149743|gb|ADK96005.1| ATP-dependent DNA helicase RecG [Prevotella melaninogenica ATCC
           25845]
          Length = 698

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 229/648 (35%), Positives = 371/648 (57%), Gaps = 25/648 (3%)

Query: 41  FIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYISQHSSFQLQKRRPYKIL-LNDGT 98
           + DLL Y P  ++DR     ISE+S++   V I G I      ++ KR+   +    DG 
Sbjct: 31  YRDLLEYFPYKYVDRTKLYLISELSQDMPFVQIKGRILSFEETEMGKRKKRIVAHFTDGH 90

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
           G I  + ++  T+ +   +   ++  + GK      R    HP     +   +N   ++ 
Sbjct: 91  G-ICDIVWFNGTKYIYQNYQVNKEYIIFGKPTFFNGRFQFTHPDIDDASQLQLNDMGMQP 149

Query: 159 VYSLP--------TGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNI 208
            Y           T  +V+   K+++  L+      LP +I   L       S   A   
Sbjct: 150 FYVTTEKMKKAGITSRAVEKLTKMLISKLTEPLEETLPPFITTHL----HLISRDAAMRK 205

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPIN-VEGKIAQKIL 266
           IH P+   D   T  AR RL ++EL   Q+ +L      +++  G   N +  +      
Sbjct: 206 IHYPKSVDD---TQRARVRLKFEELFYVQLNILRYASDHRRKYRGYIFNRIGAQFNWFYS 262

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            N+PF  T +Q+  + +I  DM+   +M R+LQGDVGSGKTLVAL++M  A++ G QA +
Sbjct: 263 HNLPFELTGAQKRVMHEIRADMASGRQMNRLLQGDVGSGKTLVALMSMLIAIDNGYQACM 322

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  ILA+QH + IK++ +   + VE++TG +    R++ L+ +  G  +I++GTHA+ 
Sbjct: 323 MAPTEILAEQHLQTIKEFLKGMNLRVELLTGIVKGKKRQEVLDGLIDGSINIVVGTHAII 382

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +D +Q+  L + +VDEQHRFGV+QR KL  K+   PHVL+MTATPIPRTL +T  GD+D+
Sbjct: 383 EDKVQFQHLGMAVVDEQHRFGVEQRAKLWSKSENPPHVLVMTATPIPRTLAMTIYGDLDV 442

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I E P GRKPI+T+    +++  +   ++  ++ G++ Y + P I+E +  + +++ +
Sbjct: 443 SIIDELPPGRKPIQTIHKYDDQMASLYSGIRQQINLGRQVYIVYPLIKESERMDLKNLED 502

Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            F ++ + F    ++ IHG+M D +KE+ M  F +G  ++L+ATTVIEVG++V +AS+++
Sbjct: 503 GFEAMQDIFPEFQLSKIHGKMKDKEKEAEMQKFVSGQTQILVATTVIEVGVNVPNASVMV 562

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ FGL+QLHQLRGRVGRG E S CIL+ +  L+K +  R+ ++ +T DGF IAE D
Sbjct: 563 ILDAQRFGLSQLHQLRGRVGRGAEQSYCILVTNHKLTKETRKRIDIMCDTNDGFEIAEAD 622

Query: 625 LKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDP 671
           LK R  G++ G +QSG+   L IA       ++++AR++A+ I+  DP
Sbjct: 623 LKLRGPGDLEGTQQSGIAFDLKIADIARDGQIVQMAREEAQKIIDDDP 670


>gi|312902137|ref|ZP_07761397.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0470]
 gi|311290801|gb|EFQ69357.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0470]
          Length = 678

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 220/628 (35%), Positives = 359/628 (57%), Gaps = 20/628 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R  ++++     
Sbjct: 31  DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    LK+      +I V GK    +  +  +       +++D   P+   
Sbjct: 90  --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              +     V L +    E  S   ++ E +  DLL+K    S  EA   +H P   ++ 
Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LIEEILPNDLLEKYRLMSRKEAMWAMHFPSNPEE- 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
             +  A+ R+ ++E    Q+ +  ++KQ K E  G+ I  +    +   + +PF  T +Q
Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH
Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L L
Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P
Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I+T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++  
Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG+M + +K+ +M  FK+   +LL++TTVIEVG++V +A++++I +A+ FGLAQ
Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
            +QSG+P+F +       ++LE+AR++A
Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645


>gi|167626709|ref|YP_001677209.1| ATP-dependent DNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596710|gb|ABZ86708.1| ATP-dependent DNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 679

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 218/617 (35%), Positives = 357/617 (57%), Gaps = 26/617 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL   P  + D  +   IS +  ++   I G I+ + +++   ++  + ++ND TG  T
Sbjct: 27  DLLTIFPKEYKDTRFVSTISSLVTDKKYLIEGRIT-NLTYKKFGKKFLRFIVNDETGICT 85

Query: 103 LL---FFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEA 158
           ++   F+  +  +L+N  +    +   GK+  L     MVHP + +  +           
Sbjct: 86  IVMFKFYPNQIVVLENAEY----VRCYGKVD-LSLNPQMVHPEWAVIKDGVCAIKKEFSP 140

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           VY L   +S  +  ++I+  L    V  + + + LL      S ++A   +H    + D 
Sbjct: 141 VYRLKK-VSDKVVSRVILSCLKSKSV-ADILPRQLLLGFGLMSFSDALYYVHALTDSIDD 198

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +  + AR  + ++E+LA ++A   +RK         +++E     +  + +P+  T++Q+
Sbjct: 199 KLINIARSSIKFEEMLAYKLAEESIRKSITNSSAPRLSLEESQQNEFYKKLPYQLTQAQQ 258

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             I +IL D+SQ + M+R+LQGDVG+GKT+VA +A+  AV++G QAV+MAP  ILA+QHY
Sbjct: 259 RTITEILADISQSSPMIRLLQGDVGAGKTIVAAMAVYTAVKSGYQAVVMAPTEILAEQHY 318

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            F   Y  +  I V  + G +     R++L  I   +  +I+GTHA+FQ+ ++Y  L LV
Sbjct: 319 SFFVSYMADLDIDVVPLLGKLTAKQTRESLAVIKSKKDCVIVGTHAVFQERVEYCNLGLV 378

Query: 399 IVDEQHRFGVQQRLKLTQKAT------APHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           +VDEQHRFGV+QRL L  K++       PH L+++ATPIPRTL +T  G++ +S + E P
Sbjct: 379 VVDEQHRFGVEQRLALINKSSLNDRHLVPHQLIISATPIPRTLAMTLYGNLQLSILDELP 438

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             RKPI T ++   +   +I ++K  +S G++ YW+CP +EE +  +F   ++   +LH+
Sbjct: 439 PNRKPIVTTVLNRAKKQSLIGKVKEAVSRGEQVYWVCPLVEESENMDF---LQDVKTLHK 495

Query: 513 HFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
               +     + +++G M   DK   M  FK    K+L+ATTVIEVG+DV +ASI+II+N
Sbjct: 496 ELAEALGKENVGLVYGSMKSKDKIQEMSDFKAKKYKVLVATTVIEVGVDVPNASIMIIDN 555

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           AE  G++QLHQLRGRVGRG + S CILLY   +S+    RLS+++ ++DGF +AE+DL+ 
Sbjct: 556 AERLGISQLHQLRGRVGRGAKESYCILLYSDRISEVGKKRLSLVRESQDGFYLAEKDLEI 615

Query: 628 RKEGEILGIKQSGMPKF 644
           R  G+ILG +QSG+  F
Sbjct: 616 RGAGDILGKEQSGVSTF 632


>gi|301164699|emb|CBW24258.1| putative ATP-dependent DNA helicase [Bacteroides fragilis 638R]
          Length = 698

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 234/666 (35%), Positives = 366/666 (54%), Gaps = 21/666 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   + +     DLL+Y P  ++DR     I EI      + + G I
Sbjct: 14  GVGPQKAAVLNKELEIYSLH-----DLLYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGKI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +F   ++R      +DGTG + L++F +  + + N +    +  V GK      RI
Sbjct: 69  LGFETFGEGRQRRLLAHFSDGTGVVDLVWF-QGIKYVTNKYKLHEEYIVFGKPTVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP         ++   ++  Y+    +         +E +    +      L E + 
Sbjct: 128 NVAHPDIDSPADLKLSSMGLQPYYNTTEKMKRSFLNSHAIEKMMATVIGQIQEPLFETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             L+      S+ +A   IH P      E    A+ RL ++EL   Q+ +L   K  +++
Sbjct: 188 PKLIADHHLMSLTDALRNIHFPSNP---ELLRKAQYRLKFEELFYVQLNILRYAKDRQRK 244

Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
             G      G+I      +N+PF  T +Q+  +++I QD+    +M R+LQGDVGSGKTL
Sbjct: 245 YRGYVFETVGEIFNTFYSKNLPFELTGAQKRVLREIRQDVGCGKQMNRLLQGDVGSGKTL 304

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL++M  A++ G QA +MAP  ILA QHY+ I++      + VE++TG++    R   L
Sbjct: 305 VALMSMLMALDNGFQACMMAPTEILANQHYDTIRELLFGMDVRVELLTGSVKGKKREAIL 364

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMT 427
             +  G  HI+IGTHA+ +D++ +  L L ++DEQHRFGV QR +L  K+   PHVL+MT
Sbjct: 365 AGLLTGDVHILIGTHAVIEDTVNFASLGLAVIDEQHRFGVAQRARLWSKSVQPPHVLVMT 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   ++  + EG++ Y 
Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRRESLYRSVRKQIEEGRQVYI 484

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ M  F +G  ++++
Sbjct: 485 VYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFISGDAQIMV 544

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+    L++ +  
Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLTEETRK 604

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665
           RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R  A+ 
Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADMARDGQLLQYVRTIAEE 664

Query: 666 ILTQDP 671
           I   DP
Sbjct: 665 ITDADP 670


>gi|225850660|ref|YP_002730894.1| ATP-dependent DNA helicase RecG [Persephonella marina EX-H1]
 gi|225644951|gb|ACO03137.1| ATP-dependent DNA helicase RecG [Persephonella marina EX-H1]
          Length = 802

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 226/625 (36%), Positives = 348/625 (55%), Gaps = 32/625 (5%)

Query: 104 LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP 163
           ++F      L + F +G+K+ + GK+   K  I MV P  IF +   V    I  VYSL 
Sbjct: 182 VYFVHDKPFLFSFFRKGKKVLLYGKVSVFKKDISMVQPE-IFTDFDPVIHDRIVPVYSLK 240

Query: 164 -------TGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                  T  +++  ++ I + L S L   PE+I  D+L++ +FP I      +H P K 
Sbjct: 241 GDSTVKITSQTINHLRRGIFKILKSFLRFHPEYIPADILKRHNFPDIKSCIKNLHFPEKD 300

Query: 216 KDFEWTSPAR----ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           +D E  +  R     RL +D+L   Q+A +  +   K +    I V      +    +PF
Sbjct: 301 QDIESLNSFRTVYQRRLIFDDLFILQLAQMYRKNLLKSDPAERITVSEGFIDEFESKLPF 360

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q  AIK+IL D+S+   M R++QGDVGSGKT+VA  ++ A      Q  +MAP  
Sbjct: 361 ELTEDQRKAIKEILSDISKTVPMNRLVQGDVGSGKTVVAAASVIAVALDNKQTAVMAPTE 420

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA QHY   K   +N  I   ++TG++PQ  ++K    I  G+A ++IGTHAL QD ++
Sbjct: 421 ILAAQHYRTFKDILKNFGITPYLLTGSIPQKDKKKIYRLIQSGEAKVVIGTHALIQDELK 480

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +  L LV+VDEQHRFGV QR  L +K+   PH L+MTATPIPRT+ + S GD+DIS I +
Sbjct: 481 FKNLSLVVVDEQHRFGVIQRKALIEKSHKVPHTLIMTATPIPRTMQIASFGDLDISTIKQ 540

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P GRKP++TV+I  +    +  ++   + +G++ + + P IEE ++ + +S  E +   
Sbjct: 541 LPKGRKPVETVLIYDDEKKILYRKVSQEIEKGRQVFVVYPLIEESEKIDLKSAEEGYEQW 600

Query: 511 HEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            + F    I ++HG+M   +K+ +M+SF+ G   +L++TTVIEVG+D+ +AS+++IE A 
Sbjct: 601 KKAFPDKKILLLHGKMPQEEKDRIMESFRKGEADILVSTTVIEVGVDIPNASVMVIEEAH 660

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK------------NSYTRLSVLKNTEDG 617
            FGL+Q+HQLRGR+GRG+    C L+      +             +  RL +L  T DG
Sbjct: 661 RFGLSQIHQLRGRIGRGQYEGYCYLVLPSRFKRKLENRDEEKRRVQTVERLKILVKTNDG 720

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ--PELHDSLLEIARKDAKHILTQDPDLTS 675
           F IAEEDLK R  G+I G  QSG     IA    +L   +L+IA+ +A+ ++ +DP L  
Sbjct: 721 FRIAEEDLKIRGGGDIAGTAQSGRLNIGIADLSRDLDRKILQIAKDEAQKLIEKDPYL-- 778

Query: 676 VRGQSIRILLYLYQYNEAFQFIRAG 700
            R  ++   +   +Y + F  +  G
Sbjct: 779 -RHHTVLKEIVFERYADRFDLVNVG 802


>gi|148380449|ref|YP_001254990.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. ATCC
           3502]
 gi|153931726|ref|YP_001384672.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. ATCC
           19397]
 gi|153935165|ref|YP_001388193.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. Hall]
 gi|148289933|emb|CAL84046.1| putative ATP-dependent DNA helicase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152927770|gb|ABS33270.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. ATCC
           19397]
 gi|152931079|gb|ABS36578.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. Hall]
          Length = 679

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 246/681 (36%), Positives = 388/681 (56%), Gaps = 44/681 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66
           +++P++T +GVG K    L K   C   N    +DLL Y P    FID + + K+  +S+
Sbjct: 3   VYSPITTLKGVGPKTKEQLEK---CMIFN---IMDLLLYFPRDYEFIDNYSKDKL--LSK 54

Query: 67  ERIVTITGYISQHSSFQLQKR-RPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + I+ +     Q  + +   R R  KIL     NDG   I   +F +    +KN F  G 
Sbjct: 55  KVIIKV-----QVENIKRDIRTRTGKILTTIIFNDGEKAIVGSWFNQP--YIKNYFKIGE 107

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           +  + G +K+ +  + + +   I  N   ++V    I   Y L   L  +L  K++   L
Sbjct: 108 EYVLQGSLKEYRGNLTINNAQ-ILKNKCGEEVEERKIIPKYPLKGDLKNNLLIKLVDSVL 166

Query: 180 SRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           + + +   LP W    L++K  F S+ ++   IH P   K+ E    +  RL + ELLA 
Sbjct: 167 TNIDIGENLPIW----LIEKYKFLSLDKSIRTIHKPENQKELE---ESIRRLKFQELLAY 219

Query: 237 QIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            + +  +++  +    GI   V  +I   ++  +PF  T +Q   +++I +D  ++  M 
Sbjct: 220 CLKIAFLKEYLETATEGISFIVSEEI-NNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMN 278

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT++ALI++   ++ G Q V++AP  ILA QHYE   K  ++  + +E++
Sbjct: 279 RLLQGDVGSGKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELL 338

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
            G++  + +++  E++  G+  +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+ 
Sbjct: 339 IGSIKVSSKKEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKML 398

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K  +   L+M+ATPIPR+L L+  GD+D+S I E P GR+ I T  +  +    V    
Sbjct: 399 NKGKSVDTLVMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFA 458

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESV 533
              ++ G++ Y +CP +EEK+E N  SV + ++ L  E+F    IAI+HG+M   +K+++
Sbjct: 459 LKEINNGRQVYIVCPLVEEKEELNLNSVEKLYDDLKGEYFKEVEIAILHGKMKGKEKDTI 518

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FK+G  K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CI
Sbjct: 519 MKDFKDGKIKALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCI 578

Query: 594 LLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           L+      KN     R+ ++K++ DGFL+AEEDLK R  GEI G KQ G    L+A    
Sbjct: 579 LIAR---VKNDIIRKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIE 635

Query: 652 HDSLLEIARKDAKHILTQDPD 672
              LL IA  ++K I+  + +
Sbjct: 636 DIHLLRIANMESKKIIDSNNE 656


>gi|288801682|ref|ZP_06407124.1| ATP-dependent DNA helicase RecG [Prevotella melaninogenica D18]
 gi|288335724|gb|EFC74157.1| ATP-dependent DNA helicase RecG [Prevotella melaninogenica D18]
          Length = 698

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 229/648 (35%), Positives = 371/648 (57%), Gaps = 25/648 (3%)

Query: 41  FIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYISQHSSFQLQKRRPYKIL-LNDGT 98
           + DLL Y P  ++DR     ISE+S++   V I G I      ++ KR+   +    DG 
Sbjct: 31  YRDLLEYFPYKYVDRTKLYLISELSQDMPFVQIKGRILSFEETEMGKRKKRIVAHFTDGH 90

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
           G   +++F   T+ +   +   ++  + GK      R    HP     +   +N   ++ 
Sbjct: 91  GVCDIVWF-NGTKYIYQNYQVNKEYIIFGKPTFFNGRFQFTHPDIDDASQLQLNDMGMQP 149

Query: 159 VYSLP--------TGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNI 208
            Y           T  +V+   K+++  L+      LP +I   L       S   A   
Sbjct: 150 FYVTTEKMKKAGITSRAVEKLTKMLISKLTEPLEETLPPFITTHL----HLISRDAAMRK 205

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPIN-VEGKIAQKIL 266
           IH P+   D   T  AR RL ++EL   Q+ +L      +++  G   N +  +      
Sbjct: 206 IHYPKSVDD---TQRARVRLKFEELFYVQLNILRYASDHRRKYRGYIFNRIGAQFNWFYS 262

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            N+PF  T +Q+  + +I  DM+   +M R+LQGDVGSGKTLVAL++M  A++ G QA +
Sbjct: 263 HNLPFELTGAQKRVMHEIRADMASGRQMNRLLQGDVGSGKTLVALMSMLIAIDNGYQACM 322

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  ILA+QH + IK++ +   + VE++TG +    R++ L+ +  G  +I++GTHA+ 
Sbjct: 323 MAPTEILAEQHLQTIKEFLKGMNLRVELLTGIVKGKKRQEVLDGLIDGSINIVVGTHAII 382

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +D +Q+  L + +VDEQHRFGV+QR KL  K+   PHVL+MTATPIPRTL +T  GD+D+
Sbjct: 383 EDKVQFQHLGMAVVDEQHRFGVEQRAKLWSKSENPPHVLVMTATPIPRTLAMTIYGDLDV 442

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I E P GRKPI+T+    +++  +   ++  ++ G++ Y + P I+E +  + +++ +
Sbjct: 443 SIIDELPPGRKPIQTIHKYDDQMASLYSGIRQQINLGRQVYIVYPLIKESERMDLKNLED 502

Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            F ++ + F    ++ IHG+M D +KE+ M  F +G  ++L+ATTVIEVG++V +AS+++
Sbjct: 503 GFEAMQDIFPEFQLSKIHGKMKDKEKEAEMQKFVSGQTQILVATTVIEVGVNVPNASVMV 562

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ FGL+QLHQLRGRVGRG E S CIL+ +  L+K +  R+ ++ +T DGF IAE D
Sbjct: 563 ILDAQRFGLSQLHQLRGRVGRGAEQSYCILVTNHKLTKETRKRIDIMCDTNDGFEIAEAD 622

Query: 625 LKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDP 671
           LK R  G++ G +QSG+   L IA       ++++AR++A+ I+  DP
Sbjct: 623 LKLRGPGDLEGTQQSGIAFDLKIADIARDGQIVQMAREEAQKIIDDDP 670


>gi|295086530|emb|CBK68053.1| ATP-dependent DNA helicase RecG [Bacteroides xylanisolvens XB1A]
          Length = 698

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 241/677 (35%), Positives = 365/677 (53%), Gaps = 43/677 (6%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   + +     DL++Y P  +IDR     I EI      + + G I
Sbjct: 14  GVGPQKAAVLNKELEIYSLH-----DLIYYFPYKYIDRSRIYYIHEIDGNMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F     +L         I + GK      RI
Sbjct: 69  LGFETIGEGRQRRLTAHFSDGTGVVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP         ++   ++  Y+    +         +E +    +      LPE + 
Sbjct: 128 NVAHPDVDKPEDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP-----ARERLAYDELLAGQIALLLMRK 245
             LL +     + EA   IH P        T+P     A+ RL ++EL   Q+ +L   K
Sbjct: 188 SKLLAEYHLMPLTEALRNIHFP--------TNPDVLRRAQYRLKFEELFYVQLNILRYAK 239

Query: 246 QFKKEIGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
             +K         G I +K+         +N+PF  T +Q+  +K+I  D+    +M R+
Sbjct: 240 DRQKR------YRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRL 293

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++TG
Sbjct: 294 LQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTG 353

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++    R   L  +  G   I+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L  K
Sbjct: 354 SIKGKRREAILTGLLTGDVKILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSK 413

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   + 
Sbjct: 414 NVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRSVH 473

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMD 535
             + EG++ Y + P I+E ++ + +++ E +  + E F   ++  +HG+M   +K+  M 
Sbjct: 474 KQIEEGRQVYIVYPLIKESEKIDLKNLEEGYQHVLEEFPKCTVCKVHGKMKPAEKDEQMQ 533

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+
Sbjct: 534 LFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILV 593

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDS 654
            +  L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       
Sbjct: 594 TNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRDGQ 653

Query: 655 LLEIARKDAKHILTQDP 671
           LL+  R  A+ I+ QDP
Sbjct: 654 LLQYVRAIAESIVEQDP 670


>gi|242242509|ref|ZP_04796954.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis W23144]
 gi|242234083|gb|EES36395.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis W23144]
          Length = 682

 Score =  366 bits (939), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 223/659 (33%), Positives = 363/659 (55%), Gaps = 20/659 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VT+
Sbjct: 13  LDKIKGIGPKRLALLEEL------NIKSVEDLVLYLPTRYEDNTV-IDLNQADDQATVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +    +     R   K+ ++     I +   +     LK        +T+ GK  + 
Sbjct: 66  QGEVYSSPTVAFFGRNKSKLTVHLMINHIAVKCVFFNQPYLKKKLELNSIVTIKGKWNRN 125

Query: 133 KNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
           K  I   + + IF N Q +     +E VY +  G+     +  I +ALS + +  EW+  
Sbjct: 126 KQEI---NGNRIFFNDQKNQEDAHLEPVYRVKEGIKQKQLRDNIRQALSDVTI-HEWLTD 181

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKE 250
           DL +K    ++A     +H+P   ++      AR   A+ EL   ++ +  L R +   +
Sbjct: 182 DLREKYKLETLAYTIQTLHHPIDKQNL---LRARRTYAFTELFMFELRMQWLNRLEKTSD 238

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             I IN +    ++ + ++PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT+VA
Sbjct: 239 EAIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVA 298

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            I M A   AG Q+ +M P  ILA+QH E + +   NT + V ++TG++    RR  LE+
Sbjct: 299 AICMYALKTAGYQSALMVPTEILAEQHAESLMQLFGNT-MNVALLTGSVKGKKRRLLLEQ 357

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           + +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MTATP
Sbjct: 358 LENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMTATP 417

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL ++  G++D+S I + P GRKPIKT      + D+V+ ++   L +G++AY ICP
Sbjct: 418 IPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICP 477

Query: 491 QIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            IE  +   + ++VVE + SL   +    + ++HG+M+  DK+ VM  F      +L++T
Sbjct: 478 LIESSEHLEDVQNVVELYESLQSDYGNEKVGLLHGKMTAEDKDQVMQKFSEHEIDILVST 537

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R+
Sbjct: 538 TVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERM 596

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 597 TIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAELI 655


>gi|317057047|ref|YP_004105514.1| ATP-dependent DNA helicase RecG [Ruminococcus albus 7]
 gi|315449316|gb|ADU22880.1| ATP-dependent DNA helicase RecG [Ruminococcus albus 7]
          Length = 678

 Score =  366 bits (939), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 238/691 (34%), Positives = 371/691 (53%), Gaps = 34/691 (4%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            L+ L  P+    GVG K S    K+            DLL++ P  +ID +    + + 
Sbjct: 1   MLSELAKPVMYLSGVGPKKSELYEKL------GVKTVYDLLYHFPRYYIDLNEPQAVRDA 54

Query: 65  SEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLL-----FFYRKTEMLKNVF 117
                V + G + +       +R    YK ++ D T +IT++     F ++  E+    +
Sbjct: 55  PLNEQVVLKGRVVRKLPEGNIRRGLTVYKAIVTDDTADITIVIYNAGFMFKALEVGHEYY 114

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G+   +TG + + +     ++P              ++ VY L  GL+    ++ +  
Sbjct: 115 LVGK---LTGNMLRREINSPQIYPV--------AGTDPVQPVYRLTEGLTQKQLRQNVHT 163

Query: 178 ALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL  L   + E +  D+++++   S++ A   +H P      E    A+ RL +DELL  
Sbjct: 164 ALGALDGSIYEPLPNDVVREQGLCSLSYALQNVHYPTDMHTLEL---AKSRLVFDELLTL 220

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            + +L+M+ + +   G  +N E     +    +PF  T  Q+SAI D ++DM +   M R
Sbjct: 221 ALGMLMMKNRSRDNTGCQMNDES--VDEYFSALPFELTAGQKSAINDCIEDMRKPFPMNR 278

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKT VA  A   A + G Q  +MAP  ILA QHY+ +K + +   + V ++T
Sbjct: 279 LIQGDVGSGKTAVAAGAAYFAYKNGCQTALMAPTEILAGQHYDTLKAFLEPLGVKVVLLT 338

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G++    + K    IA G+ ++I+GTHAL Q S ++ +L LVI DEQHRFGV+QR  L  
Sbjct: 339 GSLTPKKKEKIKAEIAAGEYNVIVGTHALVQASTEFKRLGLVITDEQHRFGVEQRAMLAG 398

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K   PH L+M+ATPIPRTL L   GD+DIS + E P GR+P++T  +     +     +K
Sbjct: 399 KGDHPHKLVMSATPIPRTLALMIYGDLDISVLKELPKGRQPVETYAVTGKLRERAFGYVK 458

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVM 534
             L EG++AY +CP IEE  +S+ R V      + E   S   + ++HGR+S   KE VM
Sbjct: 459 QYLEEGRQAYIVCPMIEE-SDSDLRDVKSYAKEISEGAFSGYRVGLLHGRLSAESKEKVM 517

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK     +L++TTV+EVG+DV +A++++IEN++ FGL+QLHQLRGRVGRGE  S CIL
Sbjct: 518 KKFKAHELDILVSTTVVEVGVDVPNAAVMVIENSDRFGLSQLHQLRGRVGRGEHKSVCIL 577

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +   P ++    RL +L +  DGF I+++DLK R  G+  G +Q G+PK  IA       
Sbjct: 578 ITDNP-TEEVVQRLKILSSCHDGFEISQQDLKLRGPGDFFGSRQHGLPKMKIADMSQDMD 636

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +L  A++ AK IL +D  L     + +R L+
Sbjct: 637 VLVRAQETAKQILCKDTHLDKGENRGLRELV 667


>gi|239982544|ref|ZP_04705068.1| ATP-dependent DNA helicase RecG [Streptomyces albus J1074]
 gi|291454386|ref|ZP_06593776.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
 gi|291357335|gb|EFE84237.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 734

 Score =  366 bits (939), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 233/715 (32%), Positives = 376/715 (52%), Gaps = 71/715 (9%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100
           DLL ++P  + +R     ++++  +  VT+   +S     +F   + +  ++ + DG+G 
Sbjct: 34  DLLHHYPRRYAERGELTTLADLPLDEHVTVVAQVSDARVHTFNAGRGKRLEVTITDGSGS 93

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF---HNSQDVN----- 152
           + L+FF R           G +    GK+    +R+ + HP Y       ++DV+     
Sbjct: 94  LRLVFFGRGVHKPHQDLQPGTRAMFAGKVSVFNHRLQLAHPAYQLLRGDGAEDVSSWAGA 153

Query: 153 ----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
               +P    + S     +VD       EAL  LP         L + +    + EA   
Sbjct: 154 LIPLYPATAKLESWKIAKAVDAVLPSADEALDPLP-------GALREGRGLLPLPEALRK 206

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILR 267
           IH P+   D    + AR RL +DE    Q+AL   R    +   +P       +      
Sbjct: 207 IHRPQSQADV---AQARARLKWDEAFVLQVALARRRHAEGQLSAVPRRPAPDGLLTAFDA 263

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +PF+ T+ Q+   ++I  D++  + M R+LQG+VGSGKT+VAL AM A V++GGQA ++
Sbjct: 264 RLPFTLTEGQQKVSREIFDDLATDHPMHRLLQGEVGSGKTMVALRAMLAVVDSGGQAAML 323

Query: 328 APIGILAQQHYEFIKKYTQN-------------TQIIVEIITGNMPQAHRRKALERIAHG 374
           AP  +LAQQH+  I +   +             T+++  ++TG+M  A RRKAL  +A G
Sbjct: 324 APTEVLAQQHHRSITEMMDDLADGSTLGAPEHATKVV--LLTGSMTAAARRKALLDLATG 381

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK------ATAPHVLLMTA 428
           +A I+IGTHAL +D++Q+++L LV+VDEQHRFGV+QR  L  K      A  PH+L+MTA
Sbjct: 382 EAGIVIGTHALIEDTVQFHELGLVVVDEQHRFGVEQRDALRAKGHTKEEARTPHLLVMTA 441

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKK 484
           TPIPRT+ +T  GD++ S + + PAGR PI T ++P       +    ER++  +  G +
Sbjct: 442 TPIPRTVAMTVFGDLETSVLDQLPAGRSPISTHVVPAQDKPHFLARAWERVREEVENGHQ 501

Query: 485 AYWICPQIEEKKESNFRSVVERFNS------------LHEHFTSS------IAIIHGRMS 526
           AY +CP+I +++E   +   ++               + E   +       I ++HGRM+
Sbjct: 502 AYVVCPRIGDEEEGGTKGTKKKAADEGDRRPPLAVLEVAEQLAAGPLAGLRIEVLHGRMA 561

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DK+ VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG
Sbjct: 562 PDDKDDVMRRFAAGEVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRG 621

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
                C+L+   P +  +  RL  +  T DGF ++  DL+QR+EG++LG  QSG+   L 
Sbjct: 622 SAPGLCLLVTDMPEAAPARARLGAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLR 681

Query: 647 AQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
               + D  ++  AR++A   + +DPDL  +   ++R  L      E  Q++  G
Sbjct: 682 MLAVIEDEEIIAEAREEATRTVAEDPDLAGL--PALRTALDALLDEEREQYLDKG 734


>gi|332296364|ref|YP_004438287.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
           DSM 14796]
 gi|332179467|gb|AEE15156.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
           DSM 14796]
          Length = 667

 Score =  366 bits (939), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 225/606 (37%), Positives = 348/606 (57%), Gaps = 39/606 (6%)

Query: 85  QKRRPYKILLNDGTGEITLLFF---YRKTEMLK---NVFFEGRKITVTGKIKKLKNR-II 137
           +++R  K+ LN    + +  +F   Y+K ++LK   N +F G  +        L NR ++
Sbjct: 63  ERKRLVKVELNIEGKKASACWFNQPYKKNQILKLRPNAYFAGEAV--------LNNRELV 114

Query: 138 MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197
             HP  I       +   I   Y L    S    +K I +       + E + + L+ + 
Sbjct: 115 FYHP--IISKDPIYSDSGIYPEYCLEINDSE--IRKTIKDIFDEKKEIKETLPESLINRL 170

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
               + +A   +H P   KD      AR+R+A+DELL  ++ +L  +++F  +    +N 
Sbjct: 171 KLMKLKDALYNLHFP---KDLRSLESARKRIAFDELLQWKLTILTEKQKFSSKSAPILNP 227

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           E  + +K L ++PF+ T+ Q+  I +I  D+S+   M R+LQGDVGSGKT++A+ A+  A
Sbjct: 228 ESDLVKKFLSSLPFTLTEDQKKVIDEIFSDVSKNKPMQRLLQGDVGSGKTVIAVSALLCA 287

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           V +G QA  M P  IL++QHYE ++++ +   + + ++TG+  ++ R   +E I  G   
Sbjct: 288 VSSGFQAAFMVPSEILSKQHYEKLREWLKPMGVKIYLLTGSTKKSERNLIIEEINKGVPL 347

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+ GTHAL  + ++   L LV++DEQHRFGV+QRL L +K   PH L+MTATPIPRTL  
Sbjct: 348 ILTGTHALITEGLELKNLGLVVIDEQHRFGVRQRLSLIEKGICPHTLVMTATPIPRTLAS 407

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY-----WICPQI 492
               D+D S+I   P GRK I T I  IN+ D  I++L  ++ E  K Y     ++CP I
Sbjct: 408 IFYADLDYSEIRTMPEGRKEIVTKI--INKSD--IKKLYSIIRENLKQYDSRVFYVCPLI 463

Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           E+       SV +R   L   F    + +IHGR+S  +++ +M  FK G  K+L++TTVI
Sbjct: 464 EDSNSLKLESVKKRHKELVNIFPEFEVGLIHGRLSQSEQDKIMQDFKTGKIKILVSTTVI 523

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT--RLS 609
           EVGID+  A+I++IEN E FGLAQLHQLRGR+GRG   S+C LL      + SY+  R+ 
Sbjct: 524 EVGIDIPQANIMVIENPERFGLAQLHQLRGRIGRGNLSSTCYLL----ADEESYSSRRVQ 579

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILT 668
           + +   +GF +AE DL+ R +GEI+G KQSG+ + L +A P     ++ IA+K A+ I++
Sbjct: 580 IFEKVNNGFELAERDLELRGQGEIIGSKQSGLDQTLKVANPLKDTDIMRIAQKVAELIIS 639

Query: 669 QDPDLT 674
           +DPDLT
Sbjct: 640 KDPDLT 645


>gi|332976649|gb|EGK13490.1| DNA helicase RecG [Desmospora sp. 8437]
          Length = 681

 Score =  366 bits (939), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 238/669 (35%), Positives = 371/669 (55%), Gaps = 27/669 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERIV 70
           P++   GVG K +  L K+            DLL Y P  + D  +R   ISE   +   
Sbjct: 7   PVTEVPGVGPKRAEELEKL------GIRTVADLLGYFPYRYDD--FRVIDISEAIHDDKA 58

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           T+ G +    S +   ++  ++        + +   +     L+     G +I V+G   
Sbjct: 59  TLEGVLYGPPSIRWYGKKKSRLTARIEVNGVHVGVVWFNQPFLRKKLKPGLRIIVSGTWD 118

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-----PVL 185
              +R+ +        +        +E VYS+   + V   ++ I +A +        VL
Sbjct: 119 A--HRLQLTADRSWIGDESKGRVNRMEPVYSVTGSIQVSWLRRTIHQAFAAFGREIEEVL 176

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PE I +    +      A+A   +H P K +D      AR R+ Y+EL   ++ LL  RK
Sbjct: 177 PEGIRR----RYRLLDRAKAMYYLHFP-KGRDE--GKQARRRMVYEELFLYELRLLWHRK 229

Query: 246 QFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           Q K ++ GI    + +  + ++R++PF  T +Q   +++IL DM   +RM R+LQGDVGS
Sbjct: 230 QQKERDRGIAHRFDRERVEALIRDLPFPLTGAQRRVVEEILADMEAGSRMNRLLQGDVGS 289

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA I + A   +G Q  +M P  ILA+QH   +++      I +E++TG+M    +
Sbjct: 290 GKTVVAAIILYANWLSGYQGALMVPTEILAEQHLRSLQETLAPVGIHLELLTGSMTTREK 349

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R  L RI  G A +++GTHAL Q+++ Y  L LVI DEQHRFGV+QR  L +K  +P VL
Sbjct: 350 RDVLSRIQMGLADLVVGTHALIQENVHYRNLGLVITDEQHRFGVRQRSILREKGESPDVL 409

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            MTATPIPRTL +T+ GD+DIS I E PAGR+P++T  +  +    V++ +     EG++
Sbjct: 410 HMTATPIPRTLAITAYGDMDISTIDEMPAGRQPVETFWVKRDVWSRVVDFIGKTCREGRQ 469

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           AY ICP IEE ++ + ++    F  +        + ++HGRM+  +KE VM SF +   +
Sbjct: 470 AYVICPLIEESEKVDLQNAQAVFEEIAVSLAPIRVGLLHGRMTPAEKEEVMQSFADNQTQ 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTV+EVG++V +A++++I++A+ FGLAQLHQLRGRVGRG   ++CIL+  P  S+ 
Sbjct: 530 VLVSTTVVEVGVNVPNATVMVIDDADRFGLAQLHQLRGRVGRGGGEATCILVADPK-SET 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ V+ +T DGF IA  DL+ R  G+  G+KQSG P+F +A       +LE+AR DA
Sbjct: 589 GVERMRVMTDTTDGFEIARRDLELRGPGDFFGVKQSGAPEFRVADLIGDFRVLEVARADA 648

Query: 664 KHILTQDPD 672
             +L +DPD
Sbjct: 649 AALL-EDPD 656


>gi|160890807|ref|ZP_02071810.1| hypothetical protein BACUNI_03252 [Bacteroides uniformis ATCC 8492]
 gi|270295805|ref|ZP_06202005.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D20]
 gi|317479756|ref|ZP_07938878.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 4_1_36]
 gi|156859806|gb|EDO53237.1| hypothetical protein BACUNI_03252 [Bacteroides uniformis ATCC 8492]
 gi|270273209|gb|EFA19071.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D20]
 gi|316904126|gb|EFV25958.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 4_1_36]
          Length = 698

 Score =  366 bits (939), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 234/666 (35%), Positives = 372/666 (55%), Gaps = 21/666 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   + +     DLL+Y P  ++DR     I EI      + + G I
Sbjct: 14  GVGPQRASVLNKELGIYSLH-----DLLYYFPYKYVDRSRIYYIQEIDGTMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F +  + L   +   ++  V GK      RI
Sbjct: 69  LSFETAGEGRQRRLIAHFSDGTGVVDLVWF-QGIKYLVGKYKVHQEYIVFGKPTFFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            M HP     +   ++   ++  Y+    +         +E +    V      LPE + 
Sbjct: 128 NMAHPDIDSASDLKLSSMGLQPYYNTTEKMKRSSLNSHAIEKMMNTVVQQLREPLPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             +L +     + EA   IH P      +    A+ RL ++EL   Q+ +L   K  +++
Sbjct: 188 PAILAEHHLMPLTEALVNIHFPANP---DLLRKAQYRLKFEELFYVQLNILRYAKDRQRK 244

Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
             G      G++      RN+PF  T +Q+  +K+I +D+    +M R+LQGDVGSGKTL
Sbjct: 245 YRGYIFERVGEVFNTFYSRNLPFELTNAQKRVLKEIRKDVGSGKQMNRLLQGDVGSGKTL 304

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL++M  A++ G QA +MAP  ILA QHYE I++     ++ VE++TG++    R   L
Sbjct: 305 VALMSMLMALDNGFQACMMAPTEILANQHYETIRELLYGMEVRVELLTGSVKGKRREAIL 364

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427
             +  G  HI+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L T+    PHVL+MT
Sbjct: 365 AGLLTGDIHILIGTHAVIEDTVNFASLGLVVIDEQHRFGVAQRARLWTKNVQPPHVLVMT 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S I E P GRKPI T+    +R   + + +   ++EG++ Y 
Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIVTLHQFDSRRISLYQSMHKQIAEGRQVYI 484

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ M  F +G  ++++
Sbjct: 485 VYPLIKESEKIDLKNLEEGYLHVCEEFPECRVCKVHGKMKPAEKDAQMQLFVSGEAQIMV 544

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL+    L++++  
Sbjct: 545 ATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCILVTGYKLAEDTRK 604

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665
           RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R+ A+ 
Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVREVAQT 664

Query: 666 ILTQDP 671
           ++  DP
Sbjct: 665 VVDADP 670


>gi|153938732|ref|YP_001391791.1| ATP-dependent DNA helicase RecG [Clostridium botulinum F str.
           Langeland]
 gi|152934628|gb|ABS40126.1| ATP-dependent DNA helicase RecG [Clostridium botulinum F str.
           Langeland]
 gi|295319817|gb|ADG00195.1| ATP-dependent DNA helicase RecG [Clostridium botulinum F str.
           230613]
          Length = 679

 Score =  366 bits (939), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 241/676 (35%), Positives = 384/676 (56%), Gaps = 34/676 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66
           +++P++T +GVG K    L K   C   N    +DLL Y P    FID + + K+  +S+
Sbjct: 3   VYSPITTLKGVGPKTKEQLEK---CMIFN---IMDLLLYFPRDYEFIDNYSKDKL--LSK 54

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           + I+ +     +        +    I+ NDG   I   +F +    +KN F  G +  + 
Sbjct: 55  KVIIKVQVENIKRDIRTRTGKVLTTIIFNDGEKAIVGSWFNQP--YIKNYFKIGEEYVLQ 112

Query: 127 GKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           G +K+ +  + + +   I  N  +++V    I   Y L   L  +L  K++   L+ + +
Sbjct: 113 GSLKEYRGNLTINNAQ-ILKNKCTEEVEERKIIPKYPLKGDLKNNLLIKLVDSVLTNIDI 171

Query: 185 ---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              LP W    L++K  F S+ ++   IH P   K+ E    +  RL + ELLA  + + 
Sbjct: 172 GENLPIW----LIEKYKFLSLDKSIRTIHKPENQKELE---ESIRRLKFQELLAYCLKIA 224

Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            +++  +    GI   V  +I   ++  +PF  T +Q   +++I +D  ++  M R+LQG
Sbjct: 225 FLKEYLETATEGISFIVSEEI-NNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMNRLLQG 283

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT++ALI++   ++ G Q V++AP  ILA QHYE   K  ++  + +E++ G++ 
Sbjct: 284 DVGSGKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELLIGSIK 343

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            + +++  E++  G+  +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+  K  +
Sbjct: 344 VSSKKEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKMLNKGKS 403

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              L+M+ATPIPR+L L+  GD+D+S I E P GR+ I T  +  +    V       ++
Sbjct: 404 VDTLVMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFALKEIN 463

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            G++ Y +CP +EEK+E N  SV + ++ L  E+F    IAI+HG+M   +K+++M  FK
Sbjct: 464 NGRQVYIVCPLVEEKEELNLNSVEKLYDDLKGEYFKEVEIAILHGKMKGKEKDTIMKDFK 523

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CIL+   
Sbjct: 524 EGKIKALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCILIAR- 582

Query: 599 PLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
              KN     R+ ++K++ DGFL+AEEDLK R  GEI G KQ G    L+A       LL
Sbjct: 583 --VKNDIIRKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIEDIHLL 640

Query: 657 EIARKDAKHILTQDPD 672
            IA  ++K I+  + +
Sbjct: 641 RIANMESKKIIDSNNE 656


>gi|168180622|ref|ZP_02615286.1| ATP-dependent DNA helicase RecG [Clostridium botulinum NCTC 2916]
 gi|182668552|gb|EDT80531.1| ATP-dependent DNA helicase RecG [Clostridium botulinum NCTC 2916]
          Length = 679

 Score =  366 bits (939), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 246/681 (36%), Positives = 388/681 (56%), Gaps = 44/681 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66
           +++P++T +GVG K    L K   C   N    +DLL Y P    FID + + K+  +S+
Sbjct: 3   VYSPITTLKGVGPKTKEQLEK---CMIFN---IMDLLLYFPRDYEFIDNYSKDKL--LSK 54

Query: 67  ERIVTITGYISQHSSFQLQKR-RPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + I+ +     Q  + +   R R  KIL     NDG   I   +F +    +KN F  G 
Sbjct: 55  KVIIKV-----QVENIKRDIRTRTGKILTTIIFNDGEKAIVGSWFNQP--YIKNYFKIGE 107

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           +  + G +K+ +  + + +   I  N  +++V    I   Y L   L  +L  K++   L
Sbjct: 108 EYVLQGSLKEYRGNLTINNAQ-ILKNKCAEEVEERKIIPKYPLKGDLKNNLLIKLVDSVL 166

Query: 180 SRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           + + +   LP W    L++K  F S+ ++   IH P   K+ E    +  RL + ELLA 
Sbjct: 167 TNIDIGENLPIW----LIEKYKFLSLDKSIRTIHKPENQKELE---ESIRRLKFQELLAY 219

Query: 237 QIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            + +  +++  +    GI   V  +I   ++  +PF  T +Q   +++I +D  ++  M 
Sbjct: 220 CLKIAFLKEYLETATEGISFIVSEEI-NNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMN 278

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT++ALI++   ++ G Q V++AP  ILA QHYE   K  ++  + +E++
Sbjct: 279 RLLQGDVGSGKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELL 338

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
            G++  + +++  E++  G+  +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+ 
Sbjct: 339 IGSIKVSSKKEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKML 398

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K  +   L+M+ATPIPR+L L+  GD+D+S I E P GR+ I T  +  +    V    
Sbjct: 399 NKGKSVDTLVMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFA 458

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESV 533
              ++ G++ Y +CP +EEK+E N  SV + ++ L  E+F    IAI+HG+M   +K+++
Sbjct: 459 LKEINNGRQVYIVCPLVEEKEELNLNSVEKLYDDLKGEYFKEVEIAILHGKMKGKEKDTI 518

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FK G  K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CI
Sbjct: 519 MKDFKEGKIKALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCI 578

Query: 594 LLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           L+      KN     R+ ++K++ DGFL+AEEDLK R  GEI G KQ G    L+A    
Sbjct: 579 LIAR---VKNDIIRKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIE 635

Query: 652 HDSLLEIARKDAKHILTQDPD 672
              LL IA  ++K I+  + +
Sbjct: 636 DIHLLRIANMESKKIIDSNNE 656


>gi|254674059|emb|CBA09843.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha275]
          Length = 488

 Score =  366 bits (939), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 195/454 (42%), Positives = 282/454 (62%), Gaps = 1/454 (0%)

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
           T PA +RL +DELLA Q+++ L R++        +  +G + Q + + +PF+ T +QE  
Sbjct: 17  TLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAALGGDGTLTQALRQALPFALTDAQEKV 76

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           + +I +DM+Q   M R+LQGDVGSGKT+VA ++   A+E+G Q  +MAP  ILA+QH+  
Sbjct: 77  VSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEILAEQHFIK 136

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            K++ +   I V  + G++ +  + +A  ++A G   I +GTHALF D + ++ L L IV
Sbjct: 137 FKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIAVGTHALFSDGVAFHNLGLTIV 196

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQHRFGV QRL L  K    H L+M+ATPIPRTL ++   D+D+S I E P GR PIKT
Sbjct: 197 DEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKT 256

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519
            ++   R  EV   +     +G++AYW+CP IEE +    ++  E    L       +I 
Sbjct: 257 RLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQLQTATETLEQLQTALPELNIG 316

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           ++HGRM   +K  VM  F  G   +L+ATTVIEVG+DV +A++++IE+AE  GLAQLHQL
Sbjct: 317 LVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMGLAQLHQL 376

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           RGRVGRG   S C+LL+  PL + +  RL V+    DGF IA +DL  R  GE LG +QS
Sbjct: 377 RGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQS 436

Query: 640 GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           G+P    A+ E    LLE AR+ A  ++ Q+P++
Sbjct: 437 GVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI 470


>gi|322806762|emb|CBZ04331.1| ATP-dependent DNA helicase RecG [Clostridium botulinum H04402 065]
          Length = 679

 Score =  366 bits (939), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 246/681 (36%), Positives = 388/681 (56%), Gaps = 44/681 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66
           +++P++T +GVG K    L K   C   N    +DLL Y P    FID + + K+  +S+
Sbjct: 3   VYSPITTLKGVGPKTKEQLEK---CMIFN---IMDLLLYFPRDYEFIDNYSKDKL--LSK 54

Query: 67  ERIVTITGYISQHSSFQLQKR-RPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + I+ +     Q  + +   R R  KIL     NDG   I   +F +    +KN F  G 
Sbjct: 55  KVIIKV-----QVENIKRDIRTRTGKILTTIIFNDGEKAIVGSWFNQP--YIKNYFKIGE 107

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           +  + G +K+ +  + + +   I  N  +++V    I   Y L   L  +L  K++   L
Sbjct: 108 EYVLQGSLKEYRGNLTINNAQ-ILKNKCAEEVEERRIIPKYPLKGDLKNNLLIKLVDSVL 166

Query: 180 SRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           + + +   LP W    L++K  F S+ ++   IH P   K+ E    +  RL + ELLA 
Sbjct: 167 TNIDIGENLPIW----LIEKYKFLSLDKSIRTIHKPENQKELE---ESIRRLKFQELLAY 219

Query: 237 QIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            + +  +++  +    GI   V  +I   ++  +PF  T +Q   +++I +D  ++  M 
Sbjct: 220 CLKIAFLKEYLETATEGISFIVSEEI-NNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMN 278

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT++ALI++   ++ G Q V++AP  ILA QHYE   K  ++  + +E++
Sbjct: 279 RLLQGDVGSGKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELL 338

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
            G++  + +++  E++  G+  +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+ 
Sbjct: 339 IGSIKVSSKKEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKML 398

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K  +   L+M+ATPIPR+L L+  GD+D+S I E P GR+ I T  +  +    V    
Sbjct: 399 NKGKSVDTLVMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFA 458

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESV 533
              ++ G++ Y +CP +EEK+E N  SV + ++ L  E+F    IAI+HG+M   +K+++
Sbjct: 459 LKEINNGRQVYIVCPLVEEKEELNLNSVEKLYDDLKGEYFKEVEIAILHGKMKGKEKDTI 518

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FK G  K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CI
Sbjct: 519 MKDFKEGKIKALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCI 578

Query: 594 LLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           L+      KN     R+ ++K++ DGFL+AEEDLK R  GEI G KQ G    L+A    
Sbjct: 579 LIAR---VKNDIIRKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIE 635

Query: 652 HDSLLEIARKDAKHILTQDPD 672
              LL IA  ++K I+  + +
Sbjct: 636 DIHLLRIANMESKKIIDSNNE 656


>gi|332685789|ref|YP_004455563.1| ATP-dependent DNA helicase RecG [Melissococcus plutonius ATCC
           35311]
 gi|332369798|dbj|BAK20754.1| ATP-dependent DNA helicase RecG [Melissococcus plutonius ATCC
           35311]
          Length = 679

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 232/653 (35%), Positives = 365/653 (55%), Gaps = 43/653 (6%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGY-----ISQHSSFQLQKRRPYKILLNDG 97
           DLL Y+P  + D   + ++ EI ++  VT+ G+     I  H  ++ + R  ++I+    
Sbjct: 31  DLLTYYPFRYEDIQEK-ELDEIQDQEKVTLKGFVVSEPIVTHYGYK-KNRLVFRIMQEHA 88

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKI----KKLKNRIIMVHPHY-------IFH 146
              I + FF +    LK       +I + GK     K L    I+            I+H
Sbjct: 89  V--INVSFFNQS--FLKEKVHLSEEIAIYGKWDAKRKSLNGIKILASKDGKTEDFSPIYH 144

Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
               VN  + ++        + DL+ + I E L      P +    LL+K    S  EA 
Sbjct: 145 ----VNKKIHQSTLVQLIQTAFDLYGEAIEETL------PNY----LLKKYHLLSRKEAM 190

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKI 265
             +H P    +      A+ R+ ++E L  Q+ +  ++KQ K E  GI I+ + K  ++ 
Sbjct: 191 FSMHFPNLPSE---NYQAKRRIVFEEFLIFQLQIQGLKKQEKAEQNGISIHYDIKRLKQF 247

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
            +++PF  T++Q+    +I +D+   N M R+LQGDVGSGKT+VA I + A V AG Q  
Sbjct: 248 TKSLPFQLTEAQKKVTNEICRDLLSANHMQRLLQGDVGSGKTIVAAIVLYAVVTAGFQGA 307

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +M P  ILAQQH E  +K     ++ + ++T +     RR+ LE++ +G   IIIGTHAL
Sbjct: 308 LMVPTEILAQQHMESFQKLYNPLEVRIALLTSSTKLKERREILEQLRNGAIDIIIGTHAL 367

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            Q+ + +++L LVI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+
Sbjct: 368 IQEDVVFHQLGLVITDEQHRFGVNQRKILREKGMRPDVLFMTATPIPRTLAITAFGEMDV 427

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I E PAGR+P++T  +   ++D V+E  K  L    + Y ICP IEE +  + ++ +E
Sbjct: 428 SSIDEMPAGRQPVETRWVRSTKLDSVLEWAKRELVNNHQTYVICPLIEESEALDAKNALE 487

Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +  L   F     + ++HG+M +  KE +M  FKN   ++L++TTVIEVG++V +A+++
Sbjct: 488 IYEYLSNFFNDEYKVGLLHGKMKNTQKEEIMQEFKNNQLQILVSTTVIEVGVNVPNATLM 547

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +I +A+ FGLAQLHQLRGRVGRG E + CIL+  P  ++    R+ ++  T +GF ++E+
Sbjct: 548 LIIDADRFGLAQLHQLRGRVGRGTEAAYCILIADPK-NELGTERMKIMTETTNGFELSEK 606

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           DL  R  GE+ G +QSG+P+F++       ++LEIA+++A  I  Q     SV
Sbjct: 607 DLTLRGSGEVFGDRQSGVPQFIVGDIVNDFNILEIAQQEAAQIWHQKSWWCSV 659


>gi|86130104|ref|ZP_01048704.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85818779|gb|EAQ39938.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 700

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 248/704 (35%), Positives = 374/704 (53%), Gaps = 39/704 (5%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M P+FL     P+   +GVG   +  L   +         F DL+   P  +ID+    K
Sbjct: 1   MNPTFLQ---TPIDYLKGVGPNRADLLRSELGIHT-----FQDLMHLFPHRYIDKTRYYK 52

Query: 61  ISEISEERI-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           ISE+      V I G  +     + + RR      +DG G++ L++F R  + +K     
Sbjct: 53  ISELERSNAEVQIIGKFTSMKMIEGKGRRLVATFRDDG-GQMELVWF-RGHKWIKEGIKM 110

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSV-DLFKKIIVE 177
                + GK      +  M HP     +  + +    ++ VY     LS   +  K++  
Sbjct: 111 NTPYVIFGKCNYYNGKFSMPHPEMELLSEHEKSIRSAMQPVYPSTEKLSNRGITNKVVNG 170

Query: 178 ALSRLPV-----LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            +  L +     L E + K L+ +       EA   +H P+     E  + A+ RL ++E
Sbjct: 171 VMQTLFMEAKNHLFESLSKPLVTELKLMPKREALLNVHFPQSQ---EHLARAQYRLKFEE 227

Query: 233 LLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQ 290
               Q+ L       K +I G P    G I  +   + +PF  T +Q+  +K+I  D+  
Sbjct: 228 FFYIQLQLAFKNVNHKTKIKGYPFEKVGPIFTEFYNDHLPFELTGAQKRVLKEIRHDLGT 287

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
             +M R+LQGDVGSGKT+VAL++M  A++ G QA +MAP  ILA QHY+ + +  +    
Sbjct: 288 NAQMNRLLQGDVGSGKTIVALMSMLMALDNGFQACLMAPTAILAVQHYQGLLELCKELNT 347

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            + ++ G+     R+   E++ +G+  I+IGTHAL +D +++  L L ++DEQHRFGV+Q
Sbjct: 348 SISLLQGSTKTLERKIIHEQLENGELDILIGTHALLEDKVKFKNLGLAVIDEQHRFGVKQ 407

Query: 411 RLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           R KL  K    PHVL+MTATPIPRTL +T  GD+D+S I E P GRK IKTV    +R D
Sbjct: 408 RSKLWHKNEYPPHVLVMTATPIPRTLAMTVYGDLDVSVIDELPPGRKAIKTV----HRYD 463

Query: 470 EVIERLKVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAI 520
               RLKV       ++ G++ Y + P I+E +  +++ +++ + S+   F      I+I
Sbjct: 464 A--NRLKVFKFIRDEIALGRQVYIVYPLIQESEAMDYKDLMDGYESISREFPMPEYQISI 521

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG+M   DKE  M+ F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLR
Sbjct: 522 VHGKMKPDDKEIEMNRFIKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLR 581

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG E S CIL+    LS +S  RL  +  T DGF IAE DLK R  G+I G +QSG
Sbjct: 582 GRVGRGAEQSYCILMTSHKLSSDSKVRLETMTRTNDGFEIAEVDLKLRGPGDITGTQQSG 641

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
                IA     + +L++AR  A  ++  DP       Q IR +
Sbjct: 642 ALNLKIADIIRDNDILKVARSYAWQLVKDDPKFEKEENQIIRFM 685


>gi|257439260|ref|ZP_05615015.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii
           A2-165]
 gi|257198302|gb|EEU96586.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii
           A2-165]
          Length = 698

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 228/645 (35%), Positives = 346/645 (53%), Gaps = 30/645 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID--RHYRPKISEISEERI 69
           P+   +GVG K +    K+            DLL ++P  +ID  R Y    +    E +
Sbjct: 26  PVRYLKGVGPKTAERFEKL------GIVTLADLLCHYPRRYIDFSRPYSIAEAPPDTECV 79

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF-----YRKTEMLKNVFFEGRKIT 124
           V    +           RR  +I   D    + + +F      +K E+ +  +FEG    
Sbjct: 80  VKAEVFAKPAGRILPGGRRMERITAGDDVSSLEITWFNNPYATQKLELGQEYYFEG---I 136

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           VTG + + +    MV+P      +  +     EAVY    GLS  +  K I + L    +
Sbjct: 137 VTGGMLRRQ----MVNPQ--VRTAAQITAAPFEAVYPQTEGLSSTVIAKCIRQLLPHAEL 190

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ + +++L+K    S A+A   IH P      E    AR RL Y+ELL  Q+ +  M+
Sbjct: 191 LPDPLPEEMLKKYRLLSKADAVRAIHCPATE---EEAFAARRRLIYEELLVLQLGIGRMK 247

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            +     G P+  +         ++PFSPT +Q  A+ +IL D+S    M R+LQGDVGS
Sbjct: 248 NRGSASTGAPM--QRLDPAPFWASLPFSPTGAQRRAVDEILTDLSGSTSMNRLLQGDVGS 305

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA  A+ A + +G QA ++AP  ILA QH E + +      + V ++TG M  A R
Sbjct: 306 GKTLVAAAAIWACIRSGYQAALLAPTEILAAQHAENLNRMLAPFGMRVALLTGGMKAAAR 365

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R  L  I   +A +++GTHA+  + +++ +L L +VDEQHRFGV+QR  L +KA  PH+L
Sbjct: 366 RTTLAAIRSDEADLVVGTHAILSEGVEFARLGLAVVDEQHRFGVRQRGMLAEKAANPHLL 425

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPRTL L   GD+DIS + E P GRKP+KT  I   +  ++   L   +  G++
Sbjct: 426 VMSATPIPRTLGLLIYGDLDISILDELPPGRKPVKTRCITGKKRRDLYGFLDREIGAGRQ 485

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP IE+  +    +V   +  + +       + ++HG++   +K +VMD FK G  
Sbjct: 486 VYIVCPAIEDTPDGGLNAVKSYYEDIAKALLPDRRVGLMHGKLKPKEKAAVMDDFKAGRL 545

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
             L++TTVIEVG+DV +A++++IENAE +GL+ LHQLRGRVGRG   S C L+     ++
Sbjct: 546 DALVSTTVIEVGVDVPNATVMVIENAERYGLSALHQLRGRVGRGAAESWCFLVSD-NTAE 604

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           +   RL  L +T DGF +A+ DL+ R  G+  G +Q G+P   IA
Sbjct: 605 SVQKRLKFLCSTSDGFAVAQFDLETRGPGDFFGSRQHGLPTLQIA 649


>gi|317050612|ref|YP_004111728.1| DEAD/DEAH box helicase domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316945696|gb|ADU65172.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
           S5]
          Length = 675

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 224/673 (33%), Positives = 365/673 (54%), Gaps = 30/673 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S  + VG + +  LSK+       ET   DLL++ P  +  + Y   +++ SE   V +
Sbjct: 3   VSYLKKVGPRRAALLSKL-----GVET-ISDLLWHLPRDY--QQYVRCLAQASEGDQVLL 54

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G I    S  +  + PYK +L    GE+ L +F      ++  F  G  +T+ G+++  
Sbjct: 55  HGTIV---SCTVPFKPPYKAVLLTDEGEVDLTWFSGARTYIQATFAPGESLTIEGQLRFF 111

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEK 191
           + R  + HP      +     PL    Y L   LS  + + I  E  +  L    E +  
Sbjct: 112 RQRPGITHPKVATATADSDIMPL----YPLTENLSQKMLQDIFTENRAAILDATEEVLPP 167

Query: 192 DLLQKKSFPSIAEAFNIIHNPRK---AKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +L+Q+   P + E+   +H P     A      S   +RL ++E+   ++   L+    +
Sbjct: 168 ELVQRYHLPGLRESLAALHYPSSRELAALKTGLSRYHKRLIFEEIFLHELGRALVSYAQR 227

Query: 249 KEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +  GI I++    +A ++ R + F+ T+ Q++ +++I QD++    M R+LQGDVGSGKT
Sbjct: 228 QRFGIAIDISVDTMADELTRRLGFTLTEGQQAVVQEIQQDLAASQPMNRLLQGDVGSGKT 287

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VAL AMA     G QA+++AP  +LAQQHY    +        VE++ G++ +  + + 
Sbjct: 288 AVALYAMAGVTTKGYQALLLAPTEVLAQQHYTLFARILDGL-CQVELLCGSLSKKQKDQR 346

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
              I  G A IIIGTHAL Q+ I +++L L ++DEQHRFGV+QR    +     + L M+
Sbjct: 347 RAAIHEGAADIIIGTHALLQEDISFHRLGLSVIDEQHRFGVEQRAVFARNNPGVNQLYMS 406

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL LT   D+ +S +   P GR+P++T+ +   R  ++ + ++ VL +G + Y 
Sbjct: 407 ATPIPRTLALTMYADMALSSLKTLPVGRQPVQTLFLGSARQKQLHQEIEQVLQQGLQVYI 466

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-----IIHGRMSDIDKESVMDSFKNGTC 542
           + P IEE ++ +    +E  + ++E +   +A     ++HGRM    K+ VM+ F  G  
Sbjct: 467 VAPLIEESEKVD----LENASRIYEQYRVQLAPHGVDLLHGRMGAEAKQQVMERFGRGET 522

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L++TTVIEVG+D   AS+++I + E FGL+QLHQLRGRVGRG     CI      + +
Sbjct: 523 QVLVSTTVIEVGVDYPRASLMVIYHPERFGLSQLHQLRGRVGRGSHPGRCIFFAPGQIGR 582

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            S  RL VL ++ DGF IA++DL+ R  G++ G++Q G+P FL+A P       E AR +
Sbjct: 583 ESRERLQVLVDSTDGFYIAQKDLEIRGPGQLFGMRQWGIPSFLVADPIRDVKAWEFARDE 642

Query: 663 AKHILTQDPDLTS 675
            + IL +DP L +
Sbjct: 643 VRAILARDPALNA 655


>gi|168210637|ref|ZP_02636262.1| ATP-dependent DNA helicase RecG [Clostridium perfringens B str.
           ATCC 3626]
 gi|170711318|gb|EDT23500.1| ATP-dependent DNA helicase RecG [Clostridium perfringens B str.
           ATCC 3626]
          Length = 690

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 246/678 (36%), Positives = 378/678 (55%), Gaps = 46/678 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           ++  +   +GVG K    L+K+           +DLL Y P     R Y     +IS   
Sbjct: 16  IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFP-----RDYEFLNDDIS--- 61

Query: 69  IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEML---------KNVF 117
              + G IS   +    K + Y   I   +G    T+ F Y   +++         K  F
Sbjct: 62  ---LNGDISDEKAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQPYIKRNF 118

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G +  + GK KK+ N + +++P       ++ N   I  +Y+L  GL+  +  K+I E
Sbjct: 119 ILGNEYNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINE 175

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
            L  + ++ E +  ++++K    S+ +A   IH P    + +    A  RL + EL    
Sbjct: 176 ILKNM-IIKENLPDEIVKKYKLISLDKAIRSIHFPAGRGELQ---SAINRLKFQELFTYS 231

Query: 238 IALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + +++M+   KKE  GI   +   + + +  ++P++ T +Q   +++IL D  +   M R
Sbjct: 232 LKIIMMKAHIKKENSGISFKM-SPLLKDLKDSLPYTLTNAQSRTLREILMDQKRNIAMNR 290

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVALI+M      G Q V+MAP  ILA QHY   KKY     + +E++T
Sbjct: 291 LVQGDVGSGKTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLDKFGVDIELLT 350

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+  +  +++  E+IA G+  ++IGTHAL QD ++   L LV+ DEQHRFGV+QR +L  
Sbjct: 351 GSTKEKEKKRIKEKIASGKEIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLIN 410

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERL 475
           K     VL+MTATPIPRTL L    D+DIS I E P GRKPI T+++ +N R+      L
Sbjct: 411 KNKRADVLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFAL 470

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533
           K V  +G++ Y + P IEE ++ N  SV + +  L         I I+HG+M+  DK+ +
Sbjct: 471 KEV-EKGRQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMAGKDKDKI 529

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +++FKNG  K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE  S CI
Sbjct: 530 INTFKNGEIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCI 589

Query: 594 LLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           L+ +   +KN  T  R+ ++  + DGF IAEEDLK R  GE+ G++Q G   F++A    
Sbjct: 590 LIAN---TKNDITRRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVD 646

Query: 652 HDSLLEIARKDAKHILTQ 669
             ++L+ A  +AK I+  
Sbjct: 647 DINILKCANHEAKLIVNN 664


>gi|153809138|ref|ZP_01961806.1| hypothetical protein BACCAC_03448 [Bacteroides caccae ATCC 43185]
 gi|149128471|gb|EDM19690.1| hypothetical protein BACCAC_03448 [Bacteroides caccae ATCC 43185]
          Length = 698

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 237/676 (35%), Positives = 365/676 (53%), Gaps = 33/676 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   + +     DL++Y P  ++DR     I EI      + + G I
Sbjct: 14  GVGPQKAAVLNKELGIYSLH-----DLIYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F     +L         I + GK      RI
Sbjct: 69  LGFETIGEGRQRRLTAHFSDGTGVVDLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL------PEWIE 190
            + HP     +   ++   ++  Y+    +         +E +    +L      PE + 
Sbjct: 128 NLAHPDVDKTDDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATVILQIQEPLPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             LL +     + EA   IH P      +    A+ RL ++EL   Q+ +L   K  ++ 
Sbjct: 188 PKLLSEHHLMPLTEALRNIHFPTNP---DLLRRAQYRLKFEELFYVQLNILRYAKDRQRR 244

Query: 251 IGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
                   G I +K+         +N+PF  T +Q+  +K+I  D+    +M R+LQGDV
Sbjct: 245 ------YRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRLLQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++TG++   
Sbjct: 299 GSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTGSIKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAP 421
            R   L  +  G   I+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L  K    P
Sbjct: 359 RREAILTGLLTGDVKILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSKNIQPP 418

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           HVL+MTATPIPRTL +T  GD+D+S I E P GRKPI TV    NR + +   ++  + E
Sbjct: 419 HVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATVHQFDNRRESLYRSVRKQIEE 478

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNG 540
           G++ Y + P I+E ++ + +++ E +  + E F   ++  +HG+M   +K+  M  F +G
Sbjct: 479 GRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPECTVCKVHGKMKAAEKDEQMQLFISG 538

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+ +  L
Sbjct: 539 KAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTNYKL 598

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIA 659
           ++++  RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  
Sbjct: 599 TEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQYV 658

Query: 660 RKDAKHILTQDPDLTS 675
           R  A+ I+  DP   S
Sbjct: 659 RAIAEDIVEHDPGAQS 674


>gi|226949848|ref|YP_002804939.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A2 str.
           Kyoto]
 gi|226841536|gb|ACO84202.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A2 str.
           Kyoto]
          Length = 679

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 241/676 (35%), Positives = 384/676 (56%), Gaps = 34/676 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66
           +++P++T +GVG K    L K   C   N    +DLL Y P    FID + + K+  +S+
Sbjct: 3   VYSPITTLKGVGPKTKEQLEK---CMIFN---IMDLLLYFPRDYEFIDNYSKDKL--LSK 54

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           + I+ +     +        +    I+ NDG   I   +F +    +KN F  G +  + 
Sbjct: 55  KVIIKVRVENIKRDIRTRTGKILTTIIFNDGEKAIVGSWFNQP--YIKNYFKIGEEYVLQ 112

Query: 127 GKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           G +K+ +  + + +   I  N  +++V    I   Y L   L  +L  K++   L+ + +
Sbjct: 113 GSLKEYRGNLTINNAQ-ILKNKCAEEVEERKIIPKYPLKGDLKNNLLIKLVDSVLTNIDI 171

Query: 185 ---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              LP W    L++K  F S+ ++   IH P   K+ E    +  RL + ELLA  + + 
Sbjct: 172 GENLPIW----LIEKYKFLSLDKSIRTIHKPENQKELE---ESIRRLKFQELLAYCLKIA 224

Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            +++  +    GI   V  +I   ++  +PF  T +Q   +++I +D  ++  M R+LQG
Sbjct: 225 FLKEYLETATEGISFIVSEEI-NNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMNRLLQG 283

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT++ALI++   ++ G Q V++AP  ILA QHYE   K  ++  + +E++ G++ 
Sbjct: 284 DVGSGKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELLIGSIK 343

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            + +++  E++  G+  +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+  K  +
Sbjct: 344 VSSKKEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKMLNKGKS 403

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              L+M+ATPIPR+L L+  GD+D+S I E P GR+ I T  +  +    V       ++
Sbjct: 404 VDTLVMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFALKEIN 463

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            G++ Y +CP +EEK+E N  SV + ++ L  E+F    IAI+HG+M   +K+++M  FK
Sbjct: 464 NGRQVYIVCPLVEEKEELNLNSVEKLYDDLKGEYFKEVEIAILHGKMKGKEKDTIMKDFK 523

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CIL+   
Sbjct: 524 EGKIKALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCILIAR- 582

Query: 599 PLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
              KN     R+ ++K++ DGFL+AEEDLK R  GEI G KQ G    L+A       LL
Sbjct: 583 --VKNDIIRKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIEDIHLL 640

Query: 657 EIARKDAKHILTQDPD 672
            IA  ++K I+  + +
Sbjct: 641 RIANMESKKIIDSNNE 656


>gi|320107807|ref|YP_004183397.1| ATP-dependent DNA helicase RecG [Terriglobus saanensis SP1PR4]
 gi|319926328|gb|ADV83403.1| ATP-dependent DNA helicase RecG [Terriglobus saanensis SP1PR4]
          Length = 747

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 235/722 (32%), Positives = 377/722 (52%), Gaps = 70/722 (9%)

Query: 43  DLLFYHPSSFIDR-HYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           DLL++ P  + DR H RP I+E+    + ++ G +        +    +++ +  G   +
Sbjct: 31  DLLYHLPFRYEDRLHPRP-IAELKAGEMASVIGEVRGSVLLHTRSMPLFEMTVAQGVDTV 89

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN---RIIMVHPHY--IFHNSQDVNFPLI 156
             ++F  +   LK+ F  G+ + + GK++  ++   +  M+ P +  +    ++  F ++
Sbjct: 90  KAMWF--RGTYLKDKFKLGQTVALYGKMEPSRSNAGKFKMLQPQFEILPEPGEEGGFEML 147

Query: 157 E-----AVYSLPTG-------LSVDLFKKII---VEALSRLPVLPEWIEKDLLQKKSFPS 201
           E      VY    G       L     ++++   +E L R   L E +   L +K     
Sbjct: 148 EMGRIVPVYETLGGTTAWGAKLGSKWMRRVVWDVLEELGREGTLDEPLPGALRKKLGLMD 207

Query: 202 IAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
             EA   +H P             +PA  RL ++EL   ++ L L RK+ ++  G+P   
Sbjct: 208 RLEALRRVHFPEAGTSMVDLQSSATPAHRRLIFEELFYLELGLELKRKRMRERTGVPFTT 267

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
             K+ + I R +PF PT +Q+  + +I+ DM +   M R+LQGDVGSGKT+VA+ A   A
Sbjct: 268 GTKVREAIKRVLPFHPTPAQKRVLGEIVADMQKPQPMRRLLQGDVGSGKTIVAMQAAIVA 327

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           +E G QA +MAP  ILA QHY   KK   ++   V ++TG++    +R    +I  G++ 
Sbjct: 328 IENGYQAALMAPTEILATQHYLSAKKLLGDS-YTVTLLTGSLDAQQKRLNRRKIFAGESE 386

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTL 435
           +++GT AL Q+ + +  L LVIVDEQHRFGV+QR  L +K     P VL+MTATPIPRTL
Sbjct: 387 LVVGTQALIQEKVDFANLGLVIVDEQHRFGVRQRFTLMKKPGTGDPDVLVMTATPIPRTL 446

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +T  GD+D+S + E P GR PI T      R +EV   +   +  G++AY + P IE  
Sbjct: 447 AMTVYGDLDVSVLDELPPGRTPIVTRRTGEERSEEVWAFVLKQVKMGRQAYIVYPMIEGA 506

Query: 496 KES----NF----------------------------RSVVERFNSLHEHFTSS------ 517
           KE     +F                            ++V+     +++H  +       
Sbjct: 507 KEDQPELDFAVDPPAEVEEPKKRAAKKATKPKKLFSEKTVMRSATEMYDHLRAGALRDIR 566

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + ++HG++S  +KE  M  F+ G   +L+ATTVIEVG+DV +AS+++IE+AE FG+AQ+H
Sbjct: 567 LGLLHGKLSADEKEVTMRRFQRGEIDVLVATTVIEVGVDVPNASVMVIEHAERFGMAQMH 626

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG   S CIL+    +S  +  R+  +  T++GF +AE DL QR  GE  G +
Sbjct: 627 QLRGRVGRGAAKSYCILVTGARVSPQAEERVGAMVRTQNGFELAELDLAQRGPGEFFGTR 686

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
           Q+GMP F +A       LLE+A+K+A   + +  D+  V  + +R  L  +Q+   +  +
Sbjct: 687 QAGMPDFRVASLLRDRDLLEMAKKEAARFIERPYDVPEVEREMVRSQLK-HQWQRRYGLV 745

Query: 698 RA 699
            A
Sbjct: 746 EA 747


>gi|91786378|ref|YP_547330.1| ATP-dependent DNA helicase RecG [Polaromonas sp. JS666]
 gi|91695603|gb|ABE42432.1| ATP-dependent DNA helicase RecG [Polaromonas sp. JS666]
          Length = 731

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 239/681 (35%), Positives = 353/681 (51%), Gaps = 60/681 (8%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           R IDL  + P  + D     ++ +  +  +V I   ++ HS    + RR  ++ ++DG+ 
Sbjct: 48  RDIDLALHLPLRYEDETRIVQLRDARDGDMVQIEAQVT-HSEVTFRPRRQLRVTVDDGSD 106

Query: 100 EITLLF--FYRKTEMLKNVFFEGRKITVTGKIKKLK-----NRIIMVHPHYIFHNSQ--D 150
              L F  FY   +   +V   G ++ V G+I+         R  MVHP +     +   
Sbjct: 107 TCVLRFLNFYPSHQKTLSV---GARVRVRGEIRGGSFAGGFGRE-MVHPSFKLAGGELPG 162

Query: 151 VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK---KSFPSIAEAFN 207
              P+   V SLP        +K ++  L+R   L E I +  L K   +    + EA  
Sbjct: 163 ALTPVYPTVASLPQAY----LRKAVLSGLARAD-LSETIPQQFLNKNLPQPLSDLREALQ 217

Query: 208 IIHNPRK----AKDFEWTSPARERLAYDEL---------------------LAGQIALLL 242
            +H+P      +   + + PA +RL  +EL                     L GQ     
Sbjct: 218 FLHHPTPDVMLSTLEDRSHPAWQRLKAEELLAQQLSQLQARRGRAAMRAPALGGQS---- 273

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           MR     +          + +++L  +PF  T +Q+    +I  D+ +   M R+LQGDV
Sbjct: 274 MRNPAADDGASLQGPHCTLHEQLLERLPFRLTPAQQRVCAEIDADLQKSIPMHRLLQGDV 333

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA +A A  + AG Q  +MAP  ILA+QH+  +  + +   I    +TG+    
Sbjct: 334 GSGKTVVAALATARCMGAGWQCALMAPTEILAEQHFRKLIGWLEPLGIRTAWLTGSQKAK 393

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL----KLTQKA 418
            RR+AL  I  G+A ++IGTHA+ QD +++  L L I+DEQHRFGV QRL    K+T+  
Sbjct: 394 ERREALALIKSGEAGLVIGTHAVIQDKVEFKNLALAIIDEQHRFGVAQRLALRSKMTEGG 453

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH+L+MTATPIPRTL ++   D+D+S I E P GR PI T ++   R DEVIER++  
Sbjct: 454 QEPHLLMMTATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKVVNDARRDEVIERIRGQ 513

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L EG++ YW+CP IEE +  +  +  +   +L        + ++H RM   +K++VM  F
Sbjct: 514 LLEGRQVYWVCPLIEESESIDLINATQTHEALSAALPGVGVGLLHSRMPVAEKKAVMSLF 573

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G   +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY 
Sbjct: 574 TEGVMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYS 633

Query: 598 ----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
               P L + +  RL  +  T DGF IA  DL+ R  GE LG +QSG P    A      
Sbjct: 634 TGDAPRLGETARERLKAMVQTHDGFEIARRDLEIRGPGEFLGARQSGAPLLRFADLATDT 693

Query: 654 SLLEIARKDAKHILTQDPDLT 674
            LL  AR  A  +L Q   L 
Sbjct: 694 QLLAWARGVAPVMLDQHAGLA 714


>gi|328885306|emb|CCA58545.1| ATP-dependent DNA helicase RecG [Streptomyces venezuelae ATCC
           10712]
          Length = 730

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 233/714 (32%), Positives = 376/714 (52%), Gaps = 73/714 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYK--ILLNDGT 98
           DLL ++P  + +R     ++++  +  VT+   ++     +F   K R  +  + + DG+
Sbjct: 34  DLLHHYPRRYAERGELTTLADLPLDEHVTVVARVADARVLTFNGSKGRGQRLEVTITDGS 93

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF-----HNSQDVN- 152
           G + L+FF +      +    G +    GK+     R+ + HP Y         + DV  
Sbjct: 94  GRLQLVFFGKGVHKPHHDLLPGTRAMFAGKVSLFNRRLQLAHPSYELLRGDGEEAVDVWA 153

Query: 153 ------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
                 +P    + S     +VD      VEAL  LP         L + +    + +A 
Sbjct: 154 GALIPIYPATAKLESWKIAKAVDAVLPSAVEALDPLP-------DALREGRGLAQLPDAL 206

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
            +IH PR   D    + ARERL +DE    Q+AL   R     +  +P          IL
Sbjct: 207 RLIHRPRTKADI---ATARERLKWDEAFVLQVALARRRH---ADTQLPAVARRPAPDGIL 260

Query: 267 ----RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
                 +PF+ T  Q    ++I  D++ ++ M R+LQG+VGSGKT+VAL AM A V++GG
Sbjct: 261 DAFDAKLPFTLTDGQRKVSQEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDSGG 320

Query: 323 QAVIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKALE 369
           QA ++AP  +LAQQH+  + +               + T+++  ++TG+M  A RR+AL 
Sbjct: 321 QAAMLAPTEVLAQQHHRSVTEMMGELAEGGMLGGADRATKVV--LLTGSMGTAARRQALL 378

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTA 428
            +  G+A ++IGTHAL +D ++++ L LV+VDEQHRFGV+QR  L  K    PH+L+MTA
Sbjct: 379 DLVTGEAGVVIGTHALIEDKVKFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTA 438

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKK 484
           TPIPRT+ +T  GD++ S + + PAGR PI + ++P       +    ER++  + +G +
Sbjct: 439 TPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKPHFLARAWERVREEVGKGHQ 498

Query: 485 AYWICPQI--EEKKESNFRSVVERFN---------SLHEHFTSS------IAIIHGRMSD 527
           AY +CP+I  EE ++   ++  E             + E   +       IA++HGRM  
Sbjct: 499 AYVVCPRIGDEEDQKKKAKASAEDEAEKRPPLAVLDVAEKLRTGPLAGLRIAVLHGRMHP 558

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            DK+ VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG 
Sbjct: 559 DDKDDVMRRFAAGELDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGS 618

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
               C+L+   P +  +  RL+ +  T DGF ++  DL+QR+EG++LG  QSG+   L  
Sbjct: 619 APGLCLLVSEMPEATPARQRLAAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRV 678

Query: 648 QPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
              + D  ++  AR++A  ++  DPDLT    Q++R  L      +  +++  G
Sbjct: 679 LAVIDDEEVIAAAREEATALVLADPDLTG--HQALRTALDALLDKDREEYLEKG 730


>gi|253566377|ref|ZP_04843831.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_2_5]
 gi|251945481|gb|EES85919.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_2_5]
          Length = 698

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 233/666 (34%), Positives = 365/666 (54%), Gaps = 21/666 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   + +     DLL+Y P  ++DR     I EI      + + G I
Sbjct: 14  GVGPQKAAVLNKELEIYSLH-----DLLYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGKI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +F   ++R      +DGTG + L++F +  + + N +    +  V GK      RI
Sbjct: 69  LGFETFGEGRQRRLLAHFSDGTGVVDLVWF-QGIKYVTNKYKLHEEYIVFGKPTVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP         ++   ++  Y+    +         +E +    +      L E + 
Sbjct: 128 NVAHPDIDSPADLKLSSMGLQPYYNTTEKMKRSFLNSHAIEKMMATVIGQIQEPLSETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             L+      S+ +A   IH P      E    A+ RL ++EL   Q+ +L   K  +++
Sbjct: 188 PKLIADHHLMSLTDALRNIHFPSNP---ELLRKAQYRLKFEELFYVQLNILRYAKDRQRK 244

Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
             G      G+       +N+PF  T +Q+  +++I QD+    +M R+LQGDVGSGKTL
Sbjct: 245 YRGYVFETVGETFNTFYSKNLPFELTGAQKRVLREIRQDVGCGKQMNRLLQGDVGSGKTL 304

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL++M  A++ G QA +MAP  ILA QHY+ I++      + VE++TG++    R   L
Sbjct: 305 VALMSMLMALDNGFQACMMAPTEILANQHYDTIRELLFGMDVRVELLTGSVKGKKREAIL 364

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMT 427
             +  G  HI+IGTHA+ +D++ +  L L ++DEQHRFGV QR +L  K+   PHVL+MT
Sbjct: 365 AGLLTGDVHILIGTHAVIEDTVNFASLGLAVIDEQHRFGVAQRARLWSKSVQPPHVLVMT 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   ++  + EG++ Y 
Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRRESLYRSVRKQIEEGRQVYI 484

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ M  F +G  ++++
Sbjct: 485 VYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFISGDAQIMV 544

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+    L++ +  
Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLTEETRK 604

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665
           RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R  A+ 
Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVRTIAEE 664

Query: 666 ILTQDP 671
           I   DP
Sbjct: 665 ITDADP 670


>gi|229824775|ref|ZP_04450844.1| hypothetical protein GCWU000182_00124 [Abiotrophia defectiva ATCC
           49176]
 gi|229791104|gb|EEP27218.1| hypothetical protein GCWU000182_00124 [Abiotrophia defectiva ATCC
           49176]
          Length = 681

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 240/654 (36%), Positives = 372/654 (56%), Gaps = 52/654 (7%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER--IV 70
           ++  +G+G K +  L+K+   G   +    D++ Y P ++ D++   KI+ IS  +  + 
Sbjct: 7   ITAIKGIGNKTAALLNKL---GIYTKR---DIIKYFPRNY-DKY--EKITPISSLKNGMT 57

Query: 71  TITGYISQHSSF--QLQKRRPYKILLNDGTGEITLLFF---YRKTEMLKNV--FFEGRKI 123
            +   I   +    Q+ K+      + DG+G+I L +F   + KT++ K V   F GR +
Sbjct: 58  AVISAIPASAPILKQMGKKSILICEVTDGSGKIELNWFNMPFMKTKLSKGVHNIFRGR-V 116

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK----IIVEAL 179
           +  GK       I +V P  +          +++ +Y L  G++ +L +K    ++VE +
Sbjct: 117 SRNGKF------IRIVQPEILTEAEYRRKTEVLQPIYRLTKGVTSNLLRKSIKEVLVEVI 170

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           S +  LP+ I+KD     S  S+ +A   IH P   K ++    AR RL +DE      A
Sbjct: 171 SGIDYLPQNIKKD----NSLISLKDALQEIHFP---KSYDTLIEARRRLVFDEFFL--FA 221

Query: 240 LLLMR-KQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           L + R KQ ++E G    VE        + ++PFS T +Q+   ++I  D++   RM R+
Sbjct: 222 LSIDRLKQGREENGSSYVVEKSSTTVDFISSLPFSLTNAQQKVWEEIENDLTSGFRMNRL 281

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKTL+A++A     + G Q+ +M P  +LA+QH+E      +   I V ++TG
Sbjct: 282 VQGDVGSGKTLLAILACLLMTKNGYQSSVMVPTEVLARQHFESFSTMLEQYGIRVVLLTG 341

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++    R++ L RI + +A IIIGTHAL Q+ + Y KL LVI DEQHRFGV+QR KL  K
Sbjct: 342 SVKGRERKETLSRIENHEADIIIGTHALIQEKVVYDKLALVITDEQHRFGVKQREKLADK 401

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH+++M+ATPIPRTL +   GD+DIS + E PA R PIK  ++     D  +   K 
Sbjct: 402 GIEPHIMVMSATPIPRTLAVILYGDLDISIVNELPADRLPIKNCVVD---EDYRMTAYKF 458

Query: 478 VLSE---GKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           +LSE   G +AY ICP +E+ +E    S+  S  E   SL  +  + I  +HG+M + +K
Sbjct: 459 ILSEVNKGHQAYIICPMVEKSEENDELSDVISYTEELTSLIGN-KAKIKYLHGKMKNDEK 517

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             +M+ F +G   +LI+TTV+EVG++V +A++++IENA+ FGLA LHQLRGR+GRG   S
Sbjct: 518 NQIMEEFSDGRIDILISTTVVEVGVNVPNATVMMIENADRFGLASLHQLRGRIGRGNAQS 577

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
            CI +     SK +  RL++L  + DGF IAEED+K R  G++ GI+QSG   F
Sbjct: 578 YCIFM-SGNTSKEAMERLNILNKSNDGFKIAEEDMKLRGPGDVFGIRQSGEMAF 630


>gi|295133061|ref|YP_003583737.1| ATP-dependent DNA helicase RecG [Zunongwangia profunda SM-A87]
 gi|294981076|gb|ADF51541.1| ATP-dependent DNA helicase RecG [Zunongwangia profunda SM-A87]
          Length = 528

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 211/487 (43%), Positives = 314/487 (64%), Gaps = 9/487 (1%)

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEG 259
           S AEA   IH P+ A   E  + A+ RL ++EL   Q+ LLL  +  K++I G      G
Sbjct: 29  SKAEALFNIHFPKNA---ELLAKAQFRLKFEELFYIQLQLLLKNQLRKQKIKGFVFGEIG 85

Query: 260 KIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +      +N +PF  T +Q+  IK+I  D+    +M R+LQGDVGSGKT+VAL++M  A+
Sbjct: 86  EYFSGFYKNHLPFDLTGAQKRVIKEIRADLGTGAQMNRLLQGDVGSGKTIVALMSMLIAI 145

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           +   QA +MAP  ILA QHY+ + +  +  ++ + ++TG+  +AHRR+  E++ +G+  I
Sbjct: 146 DNNFQACLMAPTEILAIQHYQGLVELCEKMELSIYLLTGSSKKAHRRELHEKLENGEIDI 205

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVL 437
           +IGTHAL +D ++++ L L I+DEQHRFGV QR KL +K    PH+L+MTATPIPRTL +
Sbjct: 206 LIGTHALLEDKVKFHNLGLAIIDEQHRFGVAQRAKLWRKNKIPPHILVMTATPIPRTLAM 265

Query: 438 TSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +  GD+DIS I E P GRKPI+TV     NR+ +V   LK  + +G++ Y + P I+E +
Sbjct: 266 SLYGDLDISVIDELPPGRKPIRTVHRFDSNRL-KVFRFLKEEIDKGRQVYVVYPLIQESE 324

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           + +++ +++ + S+   F    I+I+HG+M   DK+  M  F  G  ++++ATTVIEVG+
Sbjct: 325 KMDYKDLMDGYESIAREFPDFQISIVHGQMKPEDKDYEMQRFAEGKTEIMVATTVIEVGV 384

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +V +AS+++IE+AE FGL+QLHQLRGRVGRG E S CIL+    LS +S TRL  +  T 
Sbjct: 385 NVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILMTGHKLSNDSKTRLETMTATN 444

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           DGF IAE DLK R  G+I+G +QSG+    IA     + LL+ AR  A+ +L +DP L  
Sbjct: 445 DGFQIAEVDLKLRGPGDIMGTQQSGVLNLKIADIVKDNDLLKTARHIAQKVLKEDPKLAL 504

Query: 676 VRGQSIR 682
            + + +R
Sbjct: 505 EKNKVLR 511


>gi|300854456|ref|YP_003779440.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528]
 gi|300434571|gb|ADK14338.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528]
          Length = 679

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 214/553 (38%), Positives = 334/553 (60%), Gaps = 21/553 (3%)

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           + GKI+  +   ++ +P  +  NS       I  +Y L +G++ + F K+I   L+++ +
Sbjct: 112 IAGKIQHYRGNSVITNPKVVNINSNSKIEEKILPIYPLKSGITNNTFIKLISYVLTKVSI 171

Query: 185 ---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              LP+WI    + K    S+ +A  IIHNP    +F      ++RL + EL    + +L
Sbjct: 172 DENLPKWI----ITKYKLCSLDKAIRIIHNPV---NFRELREGKKRLKFQELFTYSLKIL 224

Query: 242 LMRKQF-KKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           ++++ F K + G+   +  ++ +  L+N +P+  TK+Q   I++IL D  ++  M R+LQ
Sbjct: 225 MLKEYFGKNKKGVAFKIAPELIE--LKNKLPYKLTKAQNKVIREILIDEKREVPMNRLLQ 282

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VALI++   V+ G QAV+MAP  ILAQQHYE   K  +   + +E++ G++
Sbjct: 283 GDVGSGKTVVALISIFNVVKNGYQAVLMAPTEILAQQHYEEAMKLLEGFDVEIELLCGSV 342

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
              ++ +  E++  G+  IIIGTHAL +D++++  + +V+ DEQHRFGV QR KL  K  
Sbjct: 343 TPKNKDEIKEKLKMGEIDIIIGTHALIEDNVEFKNIGIVVTDEQHRFGVIQRSKLVNKGD 402

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L+MTATPIPRTL L   GD+++S I E P GR+ I T     N  D+V +     +
Sbjct: 403 HVDTLIMTATPIPRTLSLYLYGDLNVSTIDELPPGRQKIDTYYRDKNSRDKVYKFALEEI 462

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDKESVMDSF 537
             G++ Y +CP +EE +E +  SV + +  L E +  +I   I++G+M    KE  M+ F
Sbjct: 463 KRGRQVYVVCPLVEENEELDLSSVEDIYEELKEKYFKNIQIDILYGKMQPKLKEEKMNKF 522

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KNG  K++I+TTVIEVGI+V +A+++IIENAE FGLAQLHQLRGRVGRG   S CIL+  
Sbjct: 523 KNGEIKVIISTTVIEVGINVPNATVMIIENAERFGLAQLHQLRGRVGRGSYKSYCILIAD 582

Query: 598 PPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
               KN     R+ +++++ DGF IAE+DLK R  GEI G +Q G  + + +      ++
Sbjct: 583 I---KNDIIRKRMEIMRSSNDGFFIAEQDLKIRGSGEIFGFRQHGEDELVFSNLVEDINI 639

Query: 656 LEIARKDAKHILT 668
           L+ A ++AK +L 
Sbjct: 640 LKEANREAKRLLA 652


>gi|116490527|ref|YP_810071.1| ATP-dependent DNA helicase RecG [Oenococcus oeni PSU-1]
 gi|116091252|gb|ABJ56406.1| ATP-dependent DNA helicase RecG [Oenococcus oeni PSU-1]
          Length = 676

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 237/697 (34%), Positives = 386/697 (55%), Gaps = 38/697 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           LF  ++   GVG+K +  L +  I+N          DLL Y+P  + D   R   S+  +
Sbjct: 3   LFDSITELSGVGQKRAEILKQLGILNIE--------DLLTYYPFRYDDLESRLP-SQTDD 53

Query: 67  ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + VT  G +S     S F  +K R  +++L+  G   I++ FF      LK     G++
Sbjct: 54  GQKVTFKGMVSSQPTISRFGYKKSRIAFRLLI--GHDNISVSFF--NQPWLKEQIEIGKE 109

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           + + G    +   +       I H   D     + A+Y     +     +++I  A ++ 
Sbjct: 110 MAIFGTYDAVHEAL---KGQRIIHAENDS----LAAIYPSNQAIHQKTIQQLIENAYAKY 162

Query: 183 P-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              + + I + L+      S  +  + +H P  A++ +    AR   A++E    Q+ L 
Sbjct: 163 ADQINDIIPRRLMLAYRLLSRKKQIHDMHFPDSAENAKL---ARRSAAFEEFFIFQMRLQ 219

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           LMR    K  G  I    +I    +  +P+S T +Q+  I++IL D+ +   M R+LQGD
Sbjct: 220 LMRISAGKNRGREIEYNSEILNDFIAKLPYSLTDAQKKVIQEILLDLKRPIHMNRLLQGD 279

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNM 359
           VGSGKT+VA IAM A   AG QA IM P  ILAQQH   +    Q+    + +E++T  +
Sbjct: 280 VGSGKTVVAAIAMLACYSAGLQAAIMVPTEILAQQHAINLSNLYQSAGLNLRIELLTSGL 339

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A RR+ L  +  G+  I++GTHAL Q  + +Y L L ++DEQHRFGV+QR +L ++  
Sbjct: 340 KAAARRQILADLESGEIDIVVGTHALIQADVHFYNLGLAVIDEQHRFGVKQRARLREQGQ 399

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P +L MTATPIPRTL +T+ G++D+S I + P GR+PI T  +  N+ D V + +K  L
Sbjct: 400 NPDILAMTATPIPRTLAITAYGEMDVSTIDQLPNGRRPIITKWVKSNQFDNVFDWVKTQL 459

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           + G + Y + P IEE +  + ++ V  ++ L E      I ++HGR+++ +K+ V++ F 
Sbjct: 460 AAGAQVYVVTPLIEESETLDVQNAVLIYDRLKEELKPYRIGLLHGRLTNDEKQQVINDFS 519

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               ++L+ TTVIEVG+D+ +A+I++I +A+ FG+AQLHQLRGRVGRG++ S  IL+  P
Sbjct: 520 TNRVQVLVTTTVIEVGVDIKNATIMVILDADRFGIAQLHQLRGRVGRGKKQSYAILVSDP 579

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLE 657
             ++    R+  + +T DGF +AE+DLK R  G+++GIKQ+GMP+F +  P +HD  ++E
Sbjct: 580 K-TQYGIDRMEAIVSTNDGFALAEKDLKLRGPGDVIGIKQAGMPEFNVGDP-IHDLKMME 637

Query: 658 IARKDAKHILTQ-DPDLTSVRGQSIRIL-LYLYQYNE 692
            A++ A  I +Q + D      + ++ L L +Y+Y +
Sbjct: 638 TAQQSAIEITSQSNWDADKENAELVKYLSLTMYRYKD 674


>gi|320449878|ref|YP_004201974.1| ATP-dependent DNA helicase RecG [Thermus scotoductus SA-01]
 gi|320150047|gb|ADW21425.1| ATP-dependent DNA helicase RecG [Thermus scotoductus SA-01]
          Length = 775

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 226/644 (35%), Positives = 358/644 (55%), Gaps = 13/644 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGE 100
           DLL Y+P  + DR   P +  + + +  T++  +      +  K+  +  ++   D  G 
Sbjct: 125 DLLHYYPRRYEDRRTLPGVRFLEDGQKATLSVKVLSKELVKTPKKGMQLVQVRAQDAWGF 184

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
              L ++ +T +L  +  EG  + VTG++++ +N + +   H+    ++ ++   I  +Y
Sbjct: 185 RITLVWFNQTWVLSQIQ-EGETLIVTGRVQR-RNGVQLYVEHFENEGTESLSTGRIVPIY 242

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
               G+     ++    AL     LP+ +E    + +  P  +EA   IH P   +D E 
Sbjct: 243 PAKEGIGQAFLRRTAHRALETALPLPDPLEPYREEHRLLP-YSEALRQIHFP---EDEEA 298

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
              A  RL +DE +  ++  LL        +G    VE    +   + +PF  T++QE  
Sbjct: 299 LKKALLRLKFDEYVLLELKALLDAGGLV--LGRSFKVEETWTETFKKTLPFPLTRAQERV 356

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           + +I QDM    +M R+LQGDVGSGKT+VA  A+  A   G Q  +MAP  ILA+QHY+ 
Sbjct: 357 MAEIAQDMQSPRQMARLLQGDVGSGKTVVAAYALYLAALNGAQGALMAPTEILAKQHYQN 416

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           + +Y     + VE++ G+M    R   +ER+  G+A + +GTHAL Q+ + +  L L +V
Sbjct: 417 LSRYLFPLGVRVELLLGSMTPKEREGVIERLLSGEAQVAVGTHALIQEGVGFKDLGLAVV 476

Query: 401 DEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           DE+HRFGV QR  L + A   P VL+M+ATPIPR+L LT  GD+++S + E P GRKP+K
Sbjct: 477 DEEHRFGVLQRRALLKLAKVPPDVLVMSATPIPRSLALTLYGDLEVSILDEMPPGRKPVK 536

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T ++P     +     +  + +G + + + P IEE +E + ++    +  L        +
Sbjct: 537 TKVLPHRLRLQAYAFAREEVRKGHQVFVVAPAIEESEELDLKTATALYEELKGLLPEVRM 596

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A++HGRM   +K+SVM++F+ G   LL++TTV+EVG+D+  AS+II+ENAE FGLAQLHQ
Sbjct: 597 ALLHGRMPAREKDSVMEAFRKGEFDLLVSTTVVEVGVDIPRASLIIVENAERFGLAQLHQ 656

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG  + S  +L     S+ +  RL VL+ + DGF IAE DLK R  GE+ G +Q
Sbjct: 657 LRGRVGRG-GLESYAILIAGEASQKTLKRLKVLEESGDGFYIAEMDLKLRGPGELRGTRQ 715

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           SG P+  +        ++E AR  AK IL  DPDL+  + Q+++
Sbjct: 716 SGYPELKLGDLSQDTEVIEQARALAKRILEMDPDLSLPQHQALK 759


>gi|227517284|ref|ZP_03947333.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0104]
 gi|257417234|ref|ZP_05594228.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis AR01/DG]
 gi|227075291|gb|EEI13254.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0104]
 gi|257159062|gb|EEU89022.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ARO1/DG]
          Length = 678

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 219/628 (34%), Positives = 359/628 (57%), Gaps = 20/628 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R  ++++     
Sbjct: 31  DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    LK+      +I V GK    +  +  +       +++D + P+   
Sbjct: 90  --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFS-PIYHV 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              +     V L +    E  S   ++ E +  DLL+K       EA   +H P   ++ 
Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
             +  A+ R+ ++E    Q+ +  ++KQ K E  G+ I  +    +   + +PF  T +Q
Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH
Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L L
Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P
Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I+T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++  
Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG+M + +K+ +M  FK+   +LL++TTVIEVG++V +A++++I +A+ FGLAQ
Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
            +QSG+P+F +       ++LE+AR++A
Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645


>gi|297530639|ref|YP_003671914.1| ATP-dependent DNA helicase RecG [Geobacillus sp. C56-T3]
 gi|297253891|gb|ADI27337.1| ATP-dependent DNA helicase RecG [Geobacillus sp. C56-T3]
          Length = 682

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 230/670 (34%), Positives = 376/670 (56%), Gaps = 37/670 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G++ +  L+ I       E     LL Y P  + D + +  ++ +  E  VT
Sbjct: 8   PVTAVKGIGEETAAALADI-GIATVGE-----LLAYAPYRY-DDYEQKDLAVVRHEEKVT 60

Query: 72  ITG--YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G  Y +   ++  +K+      +      IT++ F R    LK        +TV GK 
Sbjct: 61  VEGKVYSAPLLTYYGKKKSRLSFRMLADRYLITVVCFNRP--YLKEKIALNETVTVIGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNF------PLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            + +  I          N+ ++ F        IE VYS+ + L+V   ++++  A  +  
Sbjct: 119 DRHRQAI----------NAYELRFGPAPETTGIEPVYSVRSPLTVKTMRRLMKAAFEQFG 168

Query: 184 V-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             +P+ +   L +        EA   +H PR  ++      AR RL Y+E L  Q+ +  
Sbjct: 169 EHIPDLLPPALRRAYRLVDKQEALRALHFPRTREELHQ---ARRRLIYEEFLLYQLKMQA 225

Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +R+  + E  G+  +   +     L  +PF  T +Q   I +IL DM    +M R+LQGD
Sbjct: 226 LRRLMRDERRGVVHSFSEERLSSFLSGLPFVLTNAQRRVIGEILADMRSPRQMNRLLQGD 285

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA +A+ AA  +G Q  +M P  ILA+QH   + +   +T + + ++T ++  
Sbjct: 286 VGSGKTVVAAVALYAAALSGFQGALMVPTEILAEQHARSLAELFADTDVTIALLTSSVKG 345

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R+  L  +  G   I++GTHAL Q+ +Q+++L LVI DEQHRFGV+QR  L +K  AP
Sbjct: 346 KQRKAVLAELEEGTIDIVVGTHALIQEGVQFHRLGLVITDEQHRFGVEQRRVLREKGHAP 405

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL +T+ GD+D+S + E PAGRK ++T  +  ++   V++ ++  L  
Sbjct: 406 DVLMMTATPIPRTLAITAFGDMDVSVLDEMPAGRKKVETYWVKHHQFSRVLDFIEKELRR 465

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKN 539
           G +AY ICP IEE  + + ++ ++  + L  ++     I ++HGR+S  +KE VM +F  
Sbjct: 466 GHQAYVICPLIEESDKLDVQNAIDVHSQLVHYYRGKYEIGLMHGRLSADEKERVMRAFSE 525

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+  S CIL+  P 
Sbjct: 526 NRIHVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDAQSYCILIADPK 585

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEI 658
            S+    R+ ++  T DGF++AE+DL+ R  G+  G KQSG+P+F    P +HD  +LE+
Sbjct: 586 -SEVGKERMRIMTETADGFVLAEKDLELRGPGDFFGTKQSGLPEFRYGDP-VHDYRILEV 643

Query: 659 ARKDAKHILT 668
           AR+DA  +++
Sbjct: 644 ARRDAAKLVS 653


>gi|220912992|ref|YP_002488301.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
 gi|219859870|gb|ACL40212.1| DEAD/DEAH box helicase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 757

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 248/761 (32%), Positives = 383/761 (50%), Gaps = 93/761 (12%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+  R +GK+ +  + K +N      T    LL Y P  ++ R     IS++  +  VT+
Sbjct: 7   LALERRIGKRSAGVIEKHLNI-----TTVEGLLNYFPRRYMARGELTPISDLPRDEEVTL 61

Query: 73  TGYISQHSSFQLQKRRPY--KILLNDGTGEITLL------FFYRKTEMLKNVFFE----- 119
              +   ++  +Q RR     ++++D  G   L       F  +    LK  FF      
Sbjct: 62  IARVLSSNTRSMQARRGTITDVVISDDDGRNGLKLVGGTDFHGKVPGTLKISFFNAFRAK 121

Query: 120 -----GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-------------FPLIEAVYS 161
                GR+   +GK+   K  + + +P +   +S                  P+  A   
Sbjct: 122 SELLPGRRALFSGKVTSFKGSLGLTNPDFQVLDSDPFTAGGDDPEKLAAMPIPVYPATAK 181

Query: 162 LPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           LP+       +K+I   L    L  LP+ + + +  ++ F  +A+A+ +IH P  A D++
Sbjct: 182 LPSWK----IQKVIATLLETVDLAALPDPVPETVTAREEFLPLADAYRLIHEPETAADWQ 237

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGI---PINVEGKIAQKILRNIPFSPTKS 276
               AR+R  Y E L  Q AL   R Q   E      P+  +G +A    RN+PF+ T  
Sbjct: 238 R---ARQRFRYQEALVLQSALARRRSQLAAEEATARRPVR-DGLLA-AFDRNLPFTLTDG 292

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q +  K +   ++  + M R+LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LA Q
Sbjct: 293 QAAVGKTLAAGLAADHPMNRLLQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQ 352

Query: 337 HYEFIKKY---------------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           H++ I++                T    + V ++TG+MP A RR+A+   A G A I+IG
Sbjct: 353 HFDSIRRTLGPLSRDGLLGAFGGTDGQAVQVTLLTGSMPAAARRQAMLDAASGTAGIVIG 412

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSL 440
           THAL  D++ +Y L L++VDEQHRFGV+QR  L  KA   PH+L+MTATPIPRT+ +T  
Sbjct: 413 THALLSDNVSFYDLGLIVVDEQHRFGVEQRDALRAKARKPPHLLVMTATPIPRTVAMTVF 472

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           GD++ S + E P GR PI T ++ +         +  R +  +  G + Y +CP+I    
Sbjct: 473 GDLETSTLDELPKGRAPISTHLVGLAENPGWAGRIWARAREEIDAGHQVYVVCPKIGTDD 532

Query: 497 ESNFR----------------------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           + +F                       +VVE+           +A +HGR     K + M
Sbjct: 533 DGDFTPGEAEPAAADLEENGRELASVTAVVEQLQDEPSIAGVPVAPLHGRQDPDLKSATM 592

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F   + KLL++TTVIEVG+DV +A++++I +A+ FG++QLHQLRGRVGRG    +C+L
Sbjct: 593 AGFAANSIKLLVSTTVIEVGVDVHNATMMVILDADRFGISQLHQLRGRVGRGGLPGTCLL 652

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHD 653
           +        S  RL  +  T DGF++++EDLK R+EG+ILG  QSG    L + +   H+
Sbjct: 653 VTSLERGHPSRRRLDAVAATTDGFVLSQEDLKLRREGDILGASQSGGRSTLRLLRVLEHE 712

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
            ++  AR DA+ I+T D  L +    +  I  YL    EAF
Sbjct: 713 DIIAQARSDAQEIVTGDASLAAHPELADAIDRYLNPEKEAF 753


>gi|320530666|ref|ZP_08031712.1| ATP-dependent DNA helicase RecG [Selenomonas artemidis F0399]
 gi|320137074|gb|EFW29010.1| ATP-dependent DNA helicase RecG [Selenomonas artemidis F0399]
          Length = 688

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 231/651 (35%), Positives = 361/651 (55%), Gaps = 40/651 (6%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           RGVG + +  L ++       ET   DLL Y+P ++ D+    +I+++      T+ G I
Sbjct: 11  RGVGVQKAAALRRL-----GIET-VSDLLTYYPRAYEDQSRITRIADLRSGTRATVVGVI 64

Query: 77  SQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
            Q    +  +RR + +L   + DGTG    ++F ++   LK+   EGR+I +TGK     
Sbjct: 65  -QTVVERPTRRRGFTVLTALIGDGTGYAQAVWFNQR--FLKSKLREGRRIFLTGKADYAY 121

Query: 134 NR------IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP---- 183
                     +    ++       +   I  +Y+   GL+    ++++  AL        
Sbjct: 122 GGGGQLALTQITSLEFLGAEESPASRLGILPIYAATEGLTQKQLRQMMAYALRETAENLT 181

Query: 184 -VLPEWI--EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
             LP+ +  E  L+++      A+AF  IH P++A++    S AR RLA++EL   Q  L
Sbjct: 182 ETLPDVVRTEYGLVRR------ADAFRRIHFPKRAEEL---SDARRRLAFEELYLIQCGL 232

Query: 241 LLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L ++K+  + + GI     G     +L  +PF+ T+ Q++   ++ +DM     M R++Q
Sbjct: 233 LALKKRSVESQRGIAHGENGVRVAAVLEALPFTLTEDQQTVWTEVARDMESPLPMRRLVQ 292

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT +AL+A+   VE+G Q   MAP  ILA+QHY+++++      I V  ++G +
Sbjct: 293 GDVGSGKTAIALLALVKTVESGRQGAFMAPTEILARQHYDYLQELLTPLGIRVAFLSGRL 352

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA- 418
            +  R +    +A  +  I++GTHAL +D + +  L LV+ DEQHRFGV QR  L +K+ 
Sbjct: 353 AKKARTETDAALAAHEVDIVVGTHALIEDHVAFAALGLVVTDEQHRFGVAQRSALEKKSE 412

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRT+ LT  GD+D+S+I   P GR+ I+T +       ++   ++  
Sbjct: 413 VTPDVLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRRAIRTFLRTDAARAKIYAFVRKE 472

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDS 536
           +  G++AY +CP+IE  +ES+  S  E ++ L       I   ++HGRM   DK++VM  
Sbjct: 473 IESGRQAYVVCPRIEASEESDLPSAEEVYDELSRGVFRGIRCGLLHGRMKAADKDAVMRD 532

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F     KLL++TTVIEVG++V +ASI+++E+AE FGLAQLHQLRGRVGRG   S CIL+ 
Sbjct: 533 FYEDRIKLLVSTTVIEVGVNVPNASILVVEHAERFGLAQLHQLRGRVGRGAYASYCILIA 592

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
               S     RL V++ T DGF +AEEDL+ R  G+  G  Q G+    IA
Sbjct: 593 GA--SAAQAERLKVIEQTSDGFRLAEEDLRLRGPGQFFGAMQHGLGDLKIA 641


>gi|60683179|ref|YP_213323.1| ATP-dependent DNA helicase RecG [Bacteroides fragilis NCTC 9343]
 gi|60494613|emb|CAH09414.1| putative ATP-dependent DNA helicase [Bacteroides fragilis NCTC
           9343]
          Length = 698

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 236/671 (35%), Positives = 368/671 (54%), Gaps = 23/671 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   + +     DLL+Y P  ++DR     I EI      + + G I
Sbjct: 14  GVGPQKAAVLNKELEIYSLH-----DLLYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGKI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +F   ++R      +DGTG + L++F +  + + N +    +  V GK      RI
Sbjct: 69  LGFETFGEGRQRRLLAHFSDGTGVVDLVWF-QGIKYVTNKYKLHEEYIVFGKPTVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP         ++   ++  Y+    +         +E +    +      L E + 
Sbjct: 128 NVAHPDIDSPADLKLSSMGLQPYYNTTEKMKRSFLNSHAIEKMMATVIGQIQEPLSETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             L+      S+ +A   IH P      E    A+ RL ++EL   Q+ +L   K  +++
Sbjct: 188 PKLIADHHLMSLTDALRNIHFPSNP---ELLRKAQYRLKFEELFYVQLNILRYAKDRQRK 244

Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
             G      G+I      +N+PF  T +Q+  +++I QD+    +M R+LQGDVGSGKTL
Sbjct: 245 YRGYVFETVGEIFNTFYSKNLPFELTGAQKRVLREIRQDVGCGKQMNRLLQGDVGSGKTL 304

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL++M  A++ G QA +MAP  ILA QHY+ I++      + VE++TG++    R   L
Sbjct: 305 VALMSMLMALDNGFQACMMAPTEILANQHYDTIRELLFGMDVRVELLTGSVKGKKREAIL 364

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMT 427
             +  G  HI+IGTHA+ +D++ +  L L ++DEQHRFGV QR +L  K+   PHVL+MT
Sbjct: 365 AGLLTGDVHILIGTHAVIEDTVNFASLGLAVIDEQHRFGVAQRARLWSKSVQPPHVLVMT 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   ++  + EG++ Y 
Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRRESLYRSVRKQIEEGRQVYI 484

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ M  F +G  ++++
Sbjct: 485 VYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFISGDAQIMV 544

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+    L++ +  
Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLTEETRK 604

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665
           RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R  A+ 
Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVRTIAEE 664

Query: 666 ILTQDPDLTSV 676
           I   D DL  V
Sbjct: 665 I--TDADLGGV 673


>gi|256960459|ref|ZP_05564630.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis Merz96]
 gi|293385117|ref|ZP_06630943.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis R712]
 gi|312906699|ref|ZP_07765699.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DAPTO 512]
 gi|312910839|ref|ZP_07769675.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DAPTO 516]
 gi|256950955|gb|EEU67587.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis Merz96]
 gi|291077594|gb|EFE14958.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis R712]
 gi|310627347|gb|EFQ10630.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DAPTO 512]
 gi|311288862|gb|EFQ67418.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DAPTO 516]
          Length = 678

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 219/628 (34%), Positives = 359/628 (57%), Gaps = 20/628 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R  ++++     
Sbjct: 31  DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    LK+      +I V GK    +  +  +       +++D   P+   
Sbjct: 90  --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              +     V L +    E  S   ++ E +  DLL+K       EA   +H P   ++ 
Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
             +  A+ R+ ++E    Q+ +  ++KQ K E  G+ I  + +  +   + +PF  T +Q
Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVERLKTFTQGLPFELTGAQ 258

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH
Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L L
Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P
Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I+T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++  
Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG+M + +K+ +M  FK+   +LL++TTVIEVG++V +A++++I +A+ FGLAQ
Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
            +QSG+P+F +       ++LE+AR++A
Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645


>gi|88802792|ref|ZP_01118319.1| putative ATP-dependent DNA helicase [Polaribacter irgensii 23-P]
 gi|88781650|gb|EAR12828.1| putative ATP-dependent DNA helicase [Polaribacter irgensii 23-P]
          Length = 698

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 241/681 (35%), Positives = 372/681 (54%), Gaps = 29/681 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS-EERIV 70
           P++   GV  + +  LS  +     N     DLL + P  +ID+     I+E+      V
Sbjct: 6   PITYTEGVSVQRASLLSSELGLKTCN-----DLLNFFPFRYIDKTTFHAINELQPNASEV 60

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            I G I++ +S   ++         D TG + L++F +  + LK+         V GK+ 
Sbjct: 61  QIVGRITRLNSIAQKRGSRLVATFQDATGSMELVWF-KGQKWLKDSLKVNEPYVVYGKLN 119

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYS-----LPTGLSVDLFKKIIVEALSRL-P 183
                  + HP   +F   +      ++ VY      +  G+S  +    I   L +   
Sbjct: 120 HYNGSFSIPHPELELFSAYKKKLQTKMQPVYHTTERLVNAGISNKMMGNFIQRLLEQFYD 179

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + E + +++L+   F +  EA    H P+     E  + A  RL ++EL    I L L+
Sbjct: 180 SIQENLSQEILEDFKFMTKREALLNAHFPKSQ---EHLTKAENRLKFEELFF--IQLQLL 234

Query: 244 RKQFKKEI---GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           RK+   ++   G+     G I     +N +PF  T +Q+  +K++ +D++    M R+LQ
Sbjct: 235 RKKLINKVKIKGVVFEKVGVIFNDFYKNKLPFDLTNAQKRVLKEVRKDVASGAHMNRLLQ 294

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA++AM  A++ G QA IMAP  ILA QH+  + +     ++ V I+TG++
Sbjct: 295 GDVGSGKTIVAILAMLLAIDNGFQATIMAPTEILANQHFIAVSELVAGMELKVAILTGSV 354

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+    +  G  +I+IGTHAL +D +Q+  L + I+DEQHRFGV+QR KL  K  
Sbjct: 355 RTKRRREIHAGLEDGTLNILIGTHALLEDKVQFKNLGIAIIDEQHRFGVKQRAKLWAKNV 414

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKV 477
             PH+L+MTATPIPRTL ++  GD+DIS I E P GRK +KTV     NR+  V + +K 
Sbjct: 415 LPPHILVMTATPIPRTLAMSVYGDLDISVIDELPPGRKEVKTVHRFDSNRLS-VFKFMKD 473

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVM 534
            + +G++ Y + P IEE    +++ +++ + S+   F      I+I+HG+M   DKE  M
Sbjct: 474 EIEKGRQVYLVYPLIEESAAMDYKDLMDGYESVSREFPLPNYQISIVHGKMKPADKEFEM 533

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G  ++++ATTVIEVG++V +AS++IIE++E FGL+QLHQLRGRVGRG + S CIL
Sbjct: 534 QRFVKGKTQIMVATTVIEVGVNVPNASVMIIESSERFGLSQLHQLRGRVGRGADQSYCIL 593

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +    LS  + TRL  +  T DGF IAE DLK R  G I+G +QSG+    IA       
Sbjct: 594 MSSFKLSPEAKTRLKTMVETTDGFKIAEVDLKLRGPGNIMGTQQSGVLDLKIADVVKDSK 653

Query: 655 LLEIARKDAKHILTQDPDLTS 675
           +L  AR  A  +L +D +L++
Sbjct: 654 ILVAARNTAISLLQEDENLSN 674


>gi|229918594|ref|YP_002887240.1| ATP-dependent DNA helicase RecG [Exiguobacterium sp. AT1b]
 gi|229470023|gb|ACQ71795.1| ATP-dependent DNA helicase RecG [Exiguobacterium sp. AT1b]
          Length = 676

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 217/594 (36%), Positives = 332/594 (55%), Gaps = 28/594 (4%)

Query: 85  QKRRPYKILLNDGTGEITLLF---FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
           + R  +++LL D       +F   FY++  ++      G  +TV GK     NR+ +   
Sbjct: 76  KNRLQFRLLLEDRYAVQVTMFNRAFYKEKLVI------GETVTVKGKWDM--NRMTI--- 124

Query: 142 HYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197
                ++ D+ F      ++ +YSL  GL+   F +I+  A  ++  LPE + + +  + 
Sbjct: 125 -----SATDLEFGAPSGGLQPIYSLRAGLTQKNFSRIVKLAFEQVNDLPEQVPQAIRDRY 179

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
                      +H P   + ++    AR    Y+E L  Q+ L   RK  +   G  +++
Sbjct: 180 RLVDRMTMLRGMHFPDTVETYK---QARRSYVYEECLMYQLKLQAFRKMERSGNGRALHL 236

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +     + ++ + F  T +Q   I++I+ D+ +  RM R+LQGDVGSGKT+VA IA+ A 
Sbjct: 237 DKHQLNEFVKRLAFPLTGAQTRVIREIVSDLERPERMNRLLQGDVGSGKTVVAAIALYAT 296

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           V AG Q  +M P  ILA+QH   +++  +   I + ++T ++    R   L  I  G   
Sbjct: 297 VTAGYQGALMVPTEILAEQHATSLQELFEPFGITIALLTSSVKGKAREALLTAIRSGDVD 356

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           II+GTHAL Q  +++  L L I DEQHRFGV+QR KL  KA    VL MTATPIPRTL +
Sbjct: 357 IIVGTHALIQGPVEFSNLHLAITDEQHRFGVEQRKKLRDKAEFADVLYMTATPIPRTLAI 416

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++ G++D+S I E P GRKPI+T     ++ID V   +   L+ G++AY I P IEE   
Sbjct: 417 SAFGEMDVSTIDEMPKGRKPIETYWAKHDQIDRVHTMVDRELALGRQAYVIAPLIEESDT 476

Query: 498 SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               S    +  L E F++  + ++HG++S  +K+ VM SF +   ++L++TTV+EVG++
Sbjct: 477 LEVESATALYELLKERFSNYGVGLMHGKLSSTEKDEVMKSFADNATQILVSTTVVEVGVN 536

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +AS+III +AE FGLAQLHQLRGRVGRG   S CIL+  P  S     RL  +  T D
Sbjct: 537 VPNASLIIIHDAERFGLAQLHQLRGRVGRGAHQSFCILVGDPK-SDVGKVRLKTMTETND 595

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           GF++AE+DL+ R  G+  G  QSG+P F +A P L   ++E+A +DA  +L  D
Sbjct: 596 GFVLAEKDLELRGAGDFFGTAQSGLPSFRVADPVLDLKVMEVAMQDAVKLLGSD 649


>gi|187933724|ref|YP_001885426.1| ATP-dependent DNA helicase RecG [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721877|gb|ACD23098.1| ATP-dependent DNA helicase RecG [Clostridium botulinum B str.
           Eklund 17B]
          Length = 677

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 249/677 (36%), Positives = 361/677 (53%), Gaps = 48/677 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +++ +S+ +GVG K +  L+K   CG  N    +DLL Y P  +   +      EI+ E 
Sbjct: 3   IYSDISSLKGVGPKLTERLNK---CGIFN---LLDLLLYFPRDYEFVNCNILFEEINGEE 56

Query: 69  --------------IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLK 114
                         I T TG I     F+    + Y    N                 +K
Sbjct: 57  KQILRCKVIRIKGDIKTKTGKILTTIEFEYNGHKVYGKWFN--------------QRYIK 102

Query: 115 NVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKI 174
           N F+  +   + GK K++   + + +P  +   + D +   I   Y L   +S  + +K+
Sbjct: 103 NTFYINKVYNLMGKFKRIGKTLEVTNPTIVCEEALDNS---ILPKYPLKGDISNKVIEKL 159

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           I   +  + ++ E +  D+L K +  S+ +A   IH P      E    A  RL + EL 
Sbjct: 160 INLVIDSI-IIKENLPLDMLNKYNLISLNDAIRSIHFPENKDLLE---KAIIRLKFQELF 215

Query: 235 A-GQIALLLMRKQFKKEIGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKN 292
                 LL+  K  K + GI    + ++  K+L+ NIP+S T +Q   +++IL+D   + 
Sbjct: 216 TYSLKLLLVKHKLNKNKNGICFEWDNQL--KVLKDNIPYSLTNAQTKVVREILRDQKSQK 273

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++QGDVGSGKT+VALI++   ++ G Q   MAP  ILA QHYE  KK  Q+  I +
Sbjct: 274 PMNRLVQGDVGSGKTIVALISIFNVIKNGYQCAFMAPTEILANQHYEESKKLFQDFNIDI 333

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
           EI+TG+ P   +R+  E+I    A +IIGTH LFQD + + KL L+I DEQHRFGV+QR 
Sbjct: 334 EILTGSTPLKEKRRIKEKIKQENAMLIIGTHTLFQDDVIFNKLGLIITDEQHRFGVEQRS 393

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           KL  K      L+MTATPIPRTL L    D+D+S I E P GRK I T     N  D   
Sbjct: 394 KLINKGKKADCLVMTATPIPRTLALYLYSDLDVSIIDELPPGRKRIDTRFYQENNRDIGY 453

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDK 530
           E     +++G++ Y +CP I+E ++    SV   +  L       I   I+HG+M  I+K
Sbjct: 454 ELALEEINKGRQVYIVCPLIDEDEKEELNSVETLYTKLKNGIFKDIGVEILHGKMKAIEK 513

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           +  +  FKN   K+LI+TTVIEVG++V +AS++IIENAE FGLAQLHQLRGRVGRG+  S
Sbjct: 514 QDRISRFKNNEFKVLISTTVIEVGVNVPNASVMIIENAERFGLAQLHQLRGRVGRGKYAS 573

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            CIL+     S  +  R+ ++  + DGF I+EEDLK R  GE+ G KQSG   F++A   
Sbjct: 574 YCILIAKAK-SNVTKKRMMIMTESNDGFFISEEDLKLRGSGEMFGRKQSGDSNFILADLY 632

Query: 651 LHDSLLEIARKDAKHIL 667
              S+L  A+ +A  IL
Sbjct: 633 EDISILRAAKHEAIDIL 649


>gi|314936610|ref|ZP_07843957.1| ATP-dependent DNA helicase RecG [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655229|gb|EFS18974.1| ATP-dependent DNA helicase RecG [Staphylococcus hominis subsp.
           hominis C80]
          Length = 683

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 228/688 (33%), Positives = 378/688 (54%), Gaps = 22/688 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL + +G+G K    L ++      N     DL+ Y P+ + D      ++   ++  VT
Sbjct: 12  PLQSIKGLGPKRIALLHEL------NIHTIEDLVLYLPTRYEDNTV-VDLNLAEDQSTVT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I    +     R   K+ ++     I +   +     LK      + +T+ GK  +
Sbjct: 65  VAGEIYSVPTVAFFGRNKSKLTVHLMIDNIAVKCVFFNQPYLKKKIELNQTVTIKGKWNR 124

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLI--EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            K  I   + + IF N    +   +  E VY L  G+     + +I ++L+ + +  EWI
Sbjct: 125 AKQEI---NGNRIFFNDTHTSTEEVRLEPVYRLKEGIKQKQMRDMIHQSLNDVTI-HEWI 180

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFK 248
            ++L Q+     +      +H P   KD +    AR   A+ EL   ++ +  L R +  
Sbjct: 181 TEELRQRYKLELLDYTIKTLHLP---KDKQALMRARRTYAFTELFMFELRMQWLNRLEKA 237

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +  I IN +    +  ++++PF  T +Q+S++ +I +D+    RM R+LQGDVGSGKT+
Sbjct: 238 SDEAIEINYDINKVKSFIQSLPFELTDAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTV 297

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA I M A   AG Q+ +M P  ILA+QH   + +   +  + V ++TG++    RR  L
Sbjct: 298 VAAICMYALKTAGYQSALMVPTEILAEQHANSLTELFGD-HMNVALLTGSVKGKKRRVLL 356

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E++ +G    +IGTHAL QD +Q+  + LVI DEQHRFGV QR  L +K    +VL MTA
Sbjct: 357 EQLENGTIDCLIGTHALIQDDVQFKNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTA 416

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY I
Sbjct: 417 TPIPRTLAISVFGEMDVSSIKQLPKGRKPIITHWAKHEQYDQVLAQMTSELKKGRQAYVI 476

Query: 489 CPQIEEKKE-SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IE  +   + ++VVE F SL E +  + + ++HG+MS  +K+ VM  F N    +L+
Sbjct: 477 CPLIESSEHLEDVQNVVELFESLQEFYGKTHVGLLHGKMSADEKDDVMARFSNHDIDILV 536

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    
Sbjct: 537 STTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIE 595

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R++++  T DGF ++E DL+ R  G+  G+KQSG+P F++A       +LE+AR +A  +
Sbjct: 596 RMTIMTQTTDGFELSEYDLEMRGPGDFFGVKQSGLPDFMVANIVEDYRMLEVARDEAAEL 655

Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           + Q  +  + + + +R  +  +  N +F
Sbjct: 656 I-QSGEFFTEKYERLRAFINDHLLNMSF 682


>gi|315172952|gb|EFU16969.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1346]
          Length = 678

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 219/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R  ++++     
Sbjct: 31  DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    LK+      +I V GK    +  +  +       +++D   P+   
Sbjct: 90  --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              +     V L +    E  S   ++ E +  DLL+K       EA   +H P   ++ 
Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LIEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
             +  A+ R+ ++E    Q+ +  ++KQ K E  G+ I  +    +   + +PF  T +Q
Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH
Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L L
Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P
Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I+T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++  
Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG+M + +K+ +M  FK+   +LL++TTVIEVG++V +A++++I +A+ FGLAQ
Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
            +QSG+P+F +       ++LE+AR++A
Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645


>gi|171058263|ref|YP_001790612.1| ATP-dependent DNA helicase RecG [Leptothrix cholodnii SP-6]
 gi|170775708|gb|ACB33847.1| ATP-dependent DNA helicase RecG [Leptothrix cholodnii SP-6]
          Length = 671

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 234/651 (35%), Positives = 359/651 (55%), Gaps = 26/651 (3%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI----LLN 95
           R IDL  + P  + D      ++   E  ++ + G + + +  +L+ RR + +     L 
Sbjct: 8   RDIDLALHLPLRYEDETRLTPLAAAREGDLLHVEGVVRE-ARIELRPRRQFIVKLVEALG 66

Query: 96  DGTGEITLLF-FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP 154
           D  G I L+  F       +  F  G ++ V G+++       +VHP +    + +   P
Sbjct: 67  DAPGRIELILRFVNFYPSHQKTFAPGTRLRVRGELRGGFFGREIVHPVF---KTVEPGAP 123

Query: 155 L---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
           L   +  VY     L     +K +   LSR   L E +  DLL     P + E+  ++H+
Sbjct: 124 LARELTPVYPTSAQLPQAYLRKAVAAGLSRA-RLDEILPPDLL-PAGLPPLRESLYLLHH 181

Query: 212 PRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI--NVEGKIAQKI 265
           P          E   PA +R+ ++ELLA Q++ L  +++ + ++  P+     G + +K+
Sbjct: 182 PPADISLHAIQEREHPAWQRIKFEELLAQQLSQLQAQRE-RAKLRAPMLRGSAGGLHEKL 240

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +PF  T +Q    ++I  D+ +   M R+LQGDVGSGKT+VA +A A A++AG Q  
Sbjct: 241 LAALPFQLTGAQRRVAEEIATDLGRPQPMNRLLQGDVGSGKTVVAALAAAVAMDAGWQCA 300

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA+QH+  +  +     I V  +TG+     R   LE++A G A +++GTHA+
Sbjct: 301 LMAPTEILAEQHFRKLIHWLAPLGIEVAWLTGSRKGKGRAAMLEKVASGAAQLVVGTHAV 360

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMTATPIPRTLVLTSLG 441
            QD + + +L L ++DEQHRFGV QRL L +K    +  PH+L+M+ATPIPRTL +T   
Sbjct: 361 IQDDVHFARLGLAVIDEQHRFGVAQRLDLRRKLALQSLEPHLLMMSATPIPRTLAMTYFA 420

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           D+D+S I E P GR PI T +   +R ++VI R++  +++G + YW+ P IEE +  + +
Sbjct: 421 DLDVSTIDELPPGRTPIVTRVFAADRREQVIARVRDEVAKGSQVYWVVPLIEESEALDLQ 480

Query: 502 SVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           +  E    L      + + ++HGRM   +K SVM  F  G   +L+ATTVIEVG+DV +A
Sbjct: 481 NATETHQQLGAVLPGTQVGLLHGRMPPAEKASVMALFSGGQMSVLVATTVIEVGVDVPNA 540

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           S+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS+    RL  +  T DGF I
Sbjct: 541 SVMVIEHAERFGLAQLHQLRGRVGRGSVASVCVLLYTGPLSQTGRDRLKAMAETTDGFEI 600

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           A  DL+ R  GE +G +QSG      A       LL+ AR+ A  +L + P
Sbjct: 601 ARRDLEIRGPGEFMGARQSGDALLRFADLAQDGELLQCAREIAPRLLDRHP 651


>gi|328950394|ref|YP_004367729.1| ATP-dependent DNA helicase RecG [Marinithermus hydrothermalis DSM
           14884]
 gi|328450718|gb|AEB11619.1| ATP-dependent DNA helicase RecG [Marinithermus hydrothermalis DSM
           14884]
          Length = 775

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 218/637 (34%), Positives = 353/637 (55%), Gaps = 12/637 (1%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGE 100
           DLL Y+P  + DR   P    +S+   VT+TG + +    +  K+  +  + +L D  G 
Sbjct: 124 DLLHYYPRRYEDRRALPGFRLLSDGEKVTVTGRVLRKELVRTPKKGMQLVQAVLEDRWGW 183

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
                ++ +  ++K    EG +I  TG++++      +   ++     + ++   I  VY
Sbjct: 184 KLTAVWFNQPWVMKQ-LKEGARIIATGRVQRRGRYTTLAVEYFEDEEGESLSTGRITPVY 242

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
               G+S    ++ +  AL  LP  P+ + +     +    +  A   +H P      E 
Sbjct: 243 PSKEGVSQAFLRRSVWRALEALPQPPDPLPEAYRAPRDLVDLPYALRQVHFPDDEAALER 302

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
              A  RL +DE L  ++ ++L   +    +G    V     +    ++PF  T +QE A
Sbjct: 303 ---ALARLRFDEYLFLELRVMLQSGE-SALVGRVFEVREADLRAFRESLPFPLTGAQERA 358

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I++I  DM+   +M R+LQGDVGSGKT+VA  A+  A   G Q+ +MAP  ILA+QH++ 
Sbjct: 359 IREITADMASDRQMARLLQGDVGSGKTVVAAAALFVAARNGAQSALMAPTEILAKQHFQN 418

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           + +Y     + VE++ G M  A +R+ L R+  G+  +++GTHAL Q+ +++  L L ++
Sbjct: 419 LSRYLWPLGVRVELLVGAMSAAEKREVLRRVREGEVDVVVGTHALIQEDVEFKDLGLAVI 478

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+HRFGV QR  L +    P VL+M+ATPIPR+L LT  GD+++S + E P GRKP++T
Sbjct: 479 DEEHRFGVLQRRALLK--GRPDVLVMSATPIPRSLALTLYGDLEVSVLDEMPPGRKPVRT 536

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SI 518
            ++P     +     +  + +G + + + P IEE +  +  ++     + L        I
Sbjct: 537 KLLPAKLRHQAYAFARQEVQKGHQVFVVTPTIEESEAMAELQAATRLADELRALLPDVRI 596

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I+HGRMS  +K++VM+ F+     LL++TTVIEVG+D+ +A++++IENAE FGLAQLHQ
Sbjct: 597 EILHGRMSAAEKDAVMERFRRQEFDLLVSTTVIEVGVDIPNATLMVIENAERFGLAQLHQ 656

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG+  + CIL+     SK +  RL V++ + DGF IAE+DL+ R  GE+ G +Q
Sbjct: 657 LRGRVGRGDREAYCILIAG-DTSKRTMKRLKVIEESTDGFYIAEKDLELRGPGELRGTRQ 715

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           SG+P   +        L+E AR  AK IL +DP L +
Sbjct: 716 SGLPDLKLGDLTKDTELIEAARALAKEILERDPYLNA 752


>gi|238924032|ref|YP_002937548.1| ATP-dependent DNA helicase RecG [Eubacterium rectale ATCC 33656]
 gi|238875707|gb|ACR75414.1| ATP-dependent DNA helicase RecG [Eubacterium rectale ATCC 33656]
          Length = 688

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 236/685 (34%), Positives = 365/685 (53%), Gaps = 44/685 (6%)

Query: 11  APLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +P++  +G+G+K     +K  +   G        D+L + P  ++     P+I++I E  
Sbjct: 5   SPITAVKGIGEKTQKAFAKMGVYTVG--------DILLHFPRDYVKF---PEITDIDELN 53

Query: 69  IVTITGYISQHSSFQLQKRRP-------YKILLND--GTGEITLLFFYRKTEMLKNVFFE 119
            V ++   S ++ + + K+ P        +I L D    G +  L +YR    LK    +
Sbjct: 54  NVNVS---STYAIYAVIKKAPVVKNTARMQITLQDIGSPGHMIQLVWYR-MPYLKAQLVQ 109

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           GR +   G IK    R +M  P        +     ++ VYS+ +G++ +L  K I E L
Sbjct: 110 GRHLIFYGHIKPKGGRYVMEQPVVYEVQKYEAIRDTLQPVYSVTSGVTNNLIVKTIKETL 169

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           S   +L +++ KD+  +  F     A   IH P    DF+    AR RL +DE     + 
Sbjct: 170 SHDTLLSDYLPKDIRHRYGFCEYNYAMKQIHFP---DDFDALVEARRRLVFDEFF---LF 223

Query: 240 LLLMRKQFKKEIGIPINVE---GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           ++ MR Q KK+       E         ++  +P+  T +Q+  I +I QD+     M R
Sbjct: 224 IMGMRYQNKKQQKDKNEFEFTDDAFIDGLIDKLPYELTGAQKKTIDEIKQDIKSPYVMQR 283

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIV 352
           ++QGDVGSGKT+VA + MA A + G Q+ IMAP  +LA QHYE     + ++  ++ ++ 
Sbjct: 284 LIQGDVGSGKTIVAFLLMAWASKCGYQSAIMAPTEVLANQHYETFCSLVSQFGLDSPVV- 342

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+M    +R+A   + + +  +IIGTHAL Q+   +  L LVI DEQHRFGV+QR 
Sbjct: 343 -LLTGSMTAKQKREAYASLENEKNALIIGTHALIQEKADFSNLSLVITDEQHRFGVKQRE 401

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
             + K   PH+L+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++      +  
Sbjct: 402 SFSDKGRKPHILVMSATPIPRTLAIIIYGDMDISVINEVPAKRLPIKNCVVGTAFRPKAY 461

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDK 530
             ++  +  G +AY ICP +EE + S   +V +  + L       I   +++GRM    K
Sbjct: 462 SFIEEQVRAGHQAYVICPLVEETENSEGENVTDYADVLKAALPKDITVDVLNGRMKSKAK 521

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + VM  F N   ++L++TTV+EVG++V +A++++IENA+ FGLAQLHQLRGRVGRG+  S
Sbjct: 522 DEVMQRFANNESQVLVSTTVVEVGVNVPNATVMMIENADRFGLAQLHQLRGRVGRGDAQS 581

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            CI +     SK S  RL +L  + DGF IA EDLK R  G+  GI+QSG   F +A   
Sbjct: 582 YCIFINS-SNSKKSKKRLEILNKSNDGFYIASEDLKLRGPGDFFGIRQSGDLAFALADVY 640

Query: 651 LHDSLLEIARKDAKHILTQDPDLTS 675
               +L+ A +    +L  DP L +
Sbjct: 641 QDSDVLKEASEMVDEVLEADPALCT 665


>gi|182435707|ref|YP_001823426.1| ATP-dependent DNA helicase RecG [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178464223|dbj|BAG18743.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 734

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 228/691 (32%), Positives = 369/691 (53%), Gaps = 75/691 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100
           DLL ++P  + +R     ++++  +  VT+   ++      F   + +  ++ L DG+G 
Sbjct: 34  DLLHHYPRRYEERGRLTALADLPLDEHVTVVAQVADARILMFNNGRGKRLEVTLTDGSGR 93

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-------- 152
           + L+FF             GR+    GK+     ++ + HP Y   ++ D +        
Sbjct: 94  LQLVFFGHGVHKPHKELLPGRQAMFAGKVSVFNRKMQLAHPTYQLLDASDADEATEAVDA 153

Query: 153 --------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
                   +P  + + S     +VD       +A+  LP         L + + F S+ E
Sbjct: 154 FAGRLLPIYPACKQLDSWRIAKAVDAVLPSARDAVDPLPA-------SLREGRGFTSLPE 206

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
           A    H P+   D E    AR RL +DE    Q+AL   R+++  +  +P      +A  
Sbjct: 207 ALLKAHRPQTKADIE---DARARLKWDEAFVLQVAL--ARRRYA-DTQLPAAARRPVADG 260

Query: 265 ILR----NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +L      +PF+ T+ Q+   K+I  D++ ++ M R+LQG+VGSGKT+VAL AM A V+A
Sbjct: 261 LLDAFDAKLPFTLTEGQQKVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDA 320

Query: 321 GGQAVIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKA 367
           GGQA ++AP  +LAQQH+  I +                 T+++  ++TG+M  A RR+A
Sbjct: 321 GGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDHGTKVV--LLTGSMGTAARRQA 378

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLM 426
           L  +  G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR  L  K    PH+L+M
Sbjct: 379 LLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVM 438

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEG 482
           TATPIPRT+ +T  GD++ S + + PAGR PI + ++P       +    ER++  +  G
Sbjct: 439 TATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKDKPHFLARAWERVREEVENG 498

Query: 483 KKAYWICPQI-----EEKKESNFRS------------VVERFNSLHEHFTSSIAI--IHG 523
            +AY +CP+I     EEK  +  ++            V+E  + L +   + + +  +HG
Sbjct: 499 HQAYVVCPRIGDDAEEEKGRAKKKAAEEDPDKRPPLAVLEIADELRKGALAGLGVEVLHG 558

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           RM   +K+ VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRV
Sbjct: 559 RMHPDEKDDVMRRFAAGDVHVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRV 618

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG     C+L+     +  +  RLS +  T DGF ++  DL+QR+EG++LG  QSG+  
Sbjct: 619 GRGSAPGLCLLVSEAHEASPARARLSAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRS 678

Query: 644 FLIAQPELHD-SLLEIARKDAKHILTQDPDL 673
            L     + D  ++  AR++A  I+  DP+L
Sbjct: 679 SLRMLTVIDDEEVIAAAREEAVAIVAADPEL 709


>gi|307288878|ref|ZP_07568851.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0109]
 gi|306500150|gb|EFM69494.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0109]
 gi|315164405|gb|EFU08422.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1302]
          Length = 678

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 219/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R  ++++     
Sbjct: 31  DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    LK+      +I V GK    +  +  +       +++D   P+   
Sbjct: 90  --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              +     V L +    E  S   ++ E +  DLL+K       EA   +H P   ++ 
Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LIEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
             +  A+ R+ ++E    Q+ +  ++KQ K E  G+ I  +    +   + +PF  T +Q
Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH
Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L L
Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P
Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I+T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++  
Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG+M + +K+ +M  FK+   +LL++TTVIEVG++V +A++++I +A+ FGLAQ
Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
            +QSG+P+F +       ++LE+AR++A
Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645


>gi|229548042|ref|ZP_04436767.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ATCC 29200]
 gi|257080492|ref|ZP_05574853.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis E1Sol]
 gi|257091345|ref|ZP_05585706.1| ATP-dependent DNA helicase recG [Enterococcus faecalis CH188]
 gi|312905408|ref|ZP_07764522.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0635]
 gi|229306831|gb|EEN72827.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ATCC 29200]
 gi|256988522|gb|EEU75824.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis E1Sol]
 gi|257000157|gb|EEU86677.1| ATP-dependent DNA helicase recG [Enterococcus faecalis CH188]
 gi|310631137|gb|EFQ14420.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0635]
 gi|315161222|gb|EFU05239.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0645]
 gi|315577138|gb|EFU89329.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0630]
          Length = 678

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 219/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R  ++++     
Sbjct: 31  DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    LK+      +I V GK    +  +  +       +++D   P+   
Sbjct: 90  --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              +     V L +    E  S   ++ E +  DLL+K       EA   +H P   ++ 
Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LIEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
             +  A+ R+ ++E    Q+ +  ++KQ K E  G+ I  +    +   + +PF  T +Q
Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH
Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L L
Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P
Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I+T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++  
Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG+M + +K+ +M  FK+   +LL++TTVIEVG++V +A++++I +A+ FGLAQ
Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
            +QSG+P+F +       ++LE+AR++A
Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645


>gi|182625855|ref|ZP_02953621.1| ATP-dependent DNA helicase RecG [Clostridium perfringens D str.
           JGS1721]
 gi|177908889|gb|EDT71381.1| ATP-dependent DNA helicase RecG [Clostridium perfringens D str.
           JGS1721]
          Length = 690

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 245/678 (36%), Positives = 378/678 (55%), Gaps = 46/678 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           ++  +   +GVG K    L+K+           +DLL Y P     R Y     +IS   
Sbjct: 16  IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFP-----RDYEFLNDDIS--- 61

Query: 69  IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEML---------KNVF 117
              + G  S   +    K + Y   I   +G    T+ F Y   +++         K  F
Sbjct: 62  ---LNGDTSDEKAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQPYIKRNF 118

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G +  + GK KK+ N + +++P       ++ N   I  +Y+L  GL+  +  K+I E
Sbjct: 119 ILGNEYNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINE 175

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
            L  + ++ E + +++++K    S+ +A   IH P    + +    A  RL + EL    
Sbjct: 176 ILKNM-IIKENLPEEIVKKYKLISLDKAIRSIHFPEGRGELQ---SAINRLKFQELFTYS 231

Query: 238 IALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + +++M+   KKE  GI   +   + + +  ++P++ T +Q   +++IL D  +   M R
Sbjct: 232 LKIIMMKAHIKKENSGISFKM-SPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNR 290

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVALI+M      G Q V+MAP  ILA QHY   KKY     + +E++T
Sbjct: 291 LVQGDVGSGKTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLDKFGVDIELLT 350

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+  +  +++  E+IA G+  ++IGTHAL QD ++   L LV+ DEQHRFGV+QR +L  
Sbjct: 351 GSTKEKEKKRIKEKIASGKEIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLIN 410

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERL 475
           K     VL+MTATPIPRTL L    D+DIS I E P GRKPI T+++ +N R+      L
Sbjct: 411 KNKRADVLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFAL 470

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533
           K V  +G++ Y + P IEE ++ N  SV + +  L         I I+HG+M+  DK+ +
Sbjct: 471 KEV-EKGRQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMAGKDKDKI 529

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +++FKNG  K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE  S CI
Sbjct: 530 INTFKNGEIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCI 589

Query: 594 LLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           L+ +   +KN  T  R+ ++  + DGF IAEEDLK R  GE+ G++Q G   F++A    
Sbjct: 590 LIAN---TKNDITRRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVD 646

Query: 652 HDSLLEIARKDAKHILTQ 669
             ++L+ A  +AK I+  
Sbjct: 647 DINILKCANHEAKLIVNN 664


>gi|29377569|ref|NP_816723.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis V583]
 gi|227554533|ref|ZP_03984580.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis HH22]
 gi|256962943|ref|ZP_05567114.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis HIP11704]
 gi|257083222|ref|ZP_05577583.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis Fly1]
 gi|257088220|ref|ZP_05582581.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis D6]
 gi|257417957|ref|ZP_05594951.1| ATP-dependent DNA helicase recG [Enterococcus faecalis T11]
 gi|307273601|ref|ZP_07554829.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0855]
 gi|29345036|gb|AAO82793.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis V583]
 gi|227176331|gb|EEI57303.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis HH22]
 gi|256953439|gb|EEU70071.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis HIP11704]
 gi|256991252|gb|EEU78554.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis Fly1]
 gi|256996250|gb|EEU83552.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis D6]
 gi|257159785|gb|EEU89745.1| ATP-dependent DNA helicase recG [Enterococcus faecalis T11]
 gi|306509614|gb|EFM78656.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0855]
 gi|315026444|gb|EFT38376.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX2137]
 gi|315171209|gb|EFU15226.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1342]
 gi|315573261|gb|EFU85452.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0309B]
 gi|315581165|gb|EFU93356.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0309A]
          Length = 678

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 219/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R  ++++     
Sbjct: 31  DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    LK+      +I V GK    +  +  +       +++D   P+   
Sbjct: 90  --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              +     V L +    E  S   ++ E +  DLL+K       EA   +H P   ++ 
Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
             +  A+ R+ ++E    Q+ +  ++KQ K E  G+ I  +    +   + +PF  T +Q
Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH
Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L L
Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P
Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I+T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++  
Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG+M + +K+ +M  FK+   +LL++TTVIEVG++V +A++++I +A+ FGLAQ
Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
            +QSG+P+F +       ++LE+AR++A
Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645


>gi|315151044|gb|EFT95060.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0012]
          Length = 678

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 219/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R  ++++     
Sbjct: 31  DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    LK+      +I V GK    +  +  +       +++D   P+   
Sbjct: 90  --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              +     V L +    E  S   ++ E +  DLL+K       EA   +H P   ++ 
Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LIEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
             +  A+ R+ ++E    Q+ +  ++KQ K E  G+ I  +    +   + +PF  T +Q
Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH
Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L L
Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P
Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I+T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++  
Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG+M + +K+ +M  FK+   +LL++TTVIEVG++V +A++++I +A+ FGLAQ
Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
            +QSG+P+F +       ++LE+AR++A
Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645


>gi|313672957|ref|YP_004051068.1| ATP-dependent DNA helicase recg [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939713|gb|ADR18905.1| ATP-dependent DNA helicase RecG [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 756

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 211/588 (35%), Positives = 327/588 (55%), Gaps = 15/588 (2%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP----TGLSVDLFKKI 174
           +G    + GK++       +VHP ++   S D     I  VY LP      L + L KK+
Sbjct: 178 KGENYNLYGKLQNFNGLPAIVHPEFL---STD-ELGKIRPVYLLPENVKDNLYLSLLKKV 233

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-WTSPARERLAYDEL 233
            +E    +    E +   L+ K  F  +  +   IH P    +F+ +   +  R  Y+EL
Sbjct: 234 YMEYSEHIV---ETLPLRLIIKYGFLDLKNSLRYIHFPDNINEFKKYNLLSHRRFVYEEL 290

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
              Q+ L + +  + +  GI  +++  I   +   IPF  T +Q+ A+KDI  DM    +
Sbjct: 291 FYLQLGLFIRKNSYGEVRGIKFDIDKDILLTLKPYIPFKLTDAQKKALKDIFNDMKSSKQ 350

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA I+   AV+ G Q   ++P  ILA+QHY   KK  ++      
Sbjct: 351 MNRLLQGDVGSGKTVVAFISGVLAVKNGYQVAFISPTEILAEQHYNNFKKLFKD-DFSSC 409

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +ITG++ Q  ++     +  G    I GTHA+ Q+   +  L  V++DEQHRFGV QR  
Sbjct: 410 LITGSLKQKDKKYLKALVESGDISFIFGTHAILQEDTIFKNLGFVVIDEQHRFGVMQRKI 469

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L +K   P +LLM+ATPIPRTL LT  GD++IS I + P GRKPI T       I +V +
Sbjct: 470 LIEKGYTPDILLMSATPIPRTLSLTFYGDLEISIIDQLPPGRKPITTKAFRQKEIGKVFD 529

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKES 532
            +K  + +G  AY++ P I+E    + ++  + +  + E F   ++ I+HGRM   +K  
Sbjct: 530 LVKEQIEKGFSAYFVYPLIDESDTLDLKAATQAYEQVAEFFGEDNVGILHGRMKAEEKNY 589

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M+ FKN   K+L++TTVIEVG+DV  A++++IENAE FGL+QLHQLRGRVGRG + S C
Sbjct: 590 LMNRFKNREIKILVSTTVIEVGVDVPHATVMVIENAERFGLSQLHQLRGRVGRGGDQSFC 649

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            L+Y   +S++   R+  + N  DGF ++E DL+ R  G+  G +QSG+P    +     
Sbjct: 650 YLVYSDKISEDGLKRIKAMINYNDGFKLSEIDLEMRGPGDFFGTRQSGLPDLKFSNIIKD 709

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             +L  AR+DA  IL +DP L     + ++ +L  +++ +A++ +  G
Sbjct: 710 TDILLSAREDAFEILKEDPYLNKPENRILKEMLK-FKWKDAYELVNIG 756


>gi|291459590|ref|ZP_06598980.1| ATP-dependent DNA helicase RecG [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291417868|gb|EFE91587.1| ATP-dependent DNA helicase RecG [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 564

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 216/543 (39%), Positives = 318/543 (58%), Gaps = 14/543 (2%)

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLP------EWIEKDLLQKKSFPSIAEAFNIIH 210
           E VY    GLS    +K +  AL      P      +++ + L +++  P + E+ + +H
Sbjct: 20  EPVYPKSAGLSGQTIRKAVRAALLGFSEDPSPLHAFDFVPETLRRRRDLPGLYESLSAVH 79

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            P   ++      ARER +Y+ELL   +ALL  +++   E    +  E   A++ L ++P
Sbjct: 80  CPGSEEE---ALLARERFSYEELLLFSLALLRRKRERSGERSRFLLTERGEAERFLHSLP 136

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           FS T+ Q  AI++I  ++S    M R+LQGDVGSGKT+VA  A+  A  +G QA +MAP 
Sbjct: 137 FSLTEGQREAIREIEGELSGGFVMNRLLQGDVGSGKTVVAFYALFLAASSGFQAAMMAPT 196

Query: 331 GILAQQHYEFIKKYTQNTQIIVE--IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            +LA+QHYE +++  +   +  E  ++TG++ +  +R+   RI  G+  +I+GTHALFQ+
Sbjct: 197 ELLARQHYEKLREILKKISLPWEAALLTGSLSRGEKRELCRRIEEGELRLILGTHALFQE 256

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            I Y  L LV+ DEQ RFGV QR   ++K + PH+LL++ATPIPRTL L    D+ +S+I
Sbjct: 257 GIHYPALSLVVTDEQQRFGVLQRKAFSEKGSRPHILLLSATPIPRTLSLLLYQDMQVSRI 316

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             +PA R P+K  +I      +    L     +G++AY ICP IE+  E   ++V E   
Sbjct: 317 PGRPAERLPVKNALIGAGERGKAWRFLAGECRKGRQAYIICPMIEDNGEPELQNVSEYQR 376

Query: 509 SLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            L         I  +HGRM   +KE +M+SF      +L++TTV+EVG+DV +AS+I+IE
Sbjct: 377 KLRAFLPEGFRIEGLHGRMRAEEKERIMESFLRREIDILVSTTVVEVGVDVPNASVILIE 436

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           NAE FGLAQLHQLRGRVGR    S CILL     SK S  RLSVL  + DGF IAEEDL+
Sbjct: 437 NAERFGLAQLHQLRGRVGRSSLQSYCILL-DCKNSKKSRERLSVLVRSNDGFWIAEEDLR 495

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE+ GI+QSG  +F  A       L + A +DA  +L +DP L+  R + ++  L+
Sbjct: 496 LRGPGELFGIRQSGALQFRFADIYRDKELWKEASRDATELLEEDPGLSEKRNEKLQKRLF 555

Query: 687 LYQ 689
            ++
Sbjct: 556 DFE 558


>gi|255970699|ref|ZP_05421285.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T1]
 gi|312953204|ref|ZP_07772050.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0102]
 gi|255961717|gb|EET94193.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T1]
 gi|310628821|gb|EFQ12104.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0102]
 gi|315152773|gb|EFT96789.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0031]
 gi|315159392|gb|EFU03409.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0312]
 gi|323479037|gb|ADX78476.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis 62]
          Length = 678

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 219/631 (34%), Positives = 359/631 (56%), Gaps = 20/631 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R  ++++     
Sbjct: 31  DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    LK+      +I V GK    +  +  +       +++D   P+   
Sbjct: 90  --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              +     V L +    E  S   ++ E +  DLL+K       EA   +H P   ++ 
Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
             +  A+ R+ ++E    Q+ +  ++KQ K E  G+ I  +    +   + +PF  T +Q
Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH
Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L L
Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P
Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I+T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++  
Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG+M + +K+ +M  FK+   +LL++TTVIEVG++V +A++++I +A+ FGLAQ
Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            +QSG+P+F +       ++LE+AR++A  +
Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEASSL 648


>gi|255974275|ref|ZP_05424861.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T2]
 gi|256618137|ref|ZP_05474983.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ATCC 4200]
 gi|300861637|ref|ZP_07107721.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TUSoD Ef11]
 gi|307284862|ref|ZP_07565018.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0860]
 gi|255967147|gb|EET97769.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T2]
 gi|256597664|gb|EEU16840.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ATCC 4200]
 gi|295114424|emb|CBL33061.1| ATP-dependent DNA helicase RecG [Enterococcus sp. 7L76]
 gi|300849098|gb|EFK76851.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TUSoD Ef11]
 gi|306503121|gb|EFM72378.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0860]
 gi|315031793|gb|EFT43725.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0017]
 gi|315145460|gb|EFT89476.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX2141]
          Length = 678

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 219/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R  ++++     
Sbjct: 31  DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    LK+      +I V GK    +  +  +       +++D   P+   
Sbjct: 90  --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              +     V L +    E  S   ++ E +  DLL+K       EA   +H P   ++ 
Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
             +  A+ R+ ++E    Q+ +  ++KQ K E  G+ I  +    +   + +PF  T +Q
Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH
Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L L
Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P
Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I+T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++  
Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG+M + +K+ +M  FK+   +LL++TTVIEVG++V +A++++I +A+ FGLAQ
Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
            +QSG+P+F +       ++LE+AR++A
Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645


>gi|254756714|ref|ZP_05208743.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Australia
           94]
          Length = 539

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 201/514 (39%), Positives = 319/514 (62%), Gaps = 18/514 (3%)

Query: 159 VYSLPTGLSVDLFKKIIVEAL-----SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
           +YS+   L+V   ++ I +AL     S + VLP+ +   L + K  P   EA   +H P 
Sbjct: 1   MYSVKGKLTVKQMRRFIAQALKEYGDSIVEVLPDGL---LSRYKLLPRY-EALRALHFPT 56

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFS 272
             +D +    AR R  Y+E    Q+ +  +RK + +   G    +  +  Q+ +  +PF 
Sbjct: 57  GQEDLK---QARRRFVYEEFFLFQLKMQTLRKMERENSKGTKKEIPSEELQEFIDALPFP 113

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T +Q   + +I++DM+   RM R+LQGDVGSGKT+VA I + AA  A  Q  +M P  I
Sbjct: 114 LTGAQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMVPTEI 173

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QHY+ + +   +  + VE++T ++    RR+ L ++  G+  I++GTHAL QD + +
Sbjct: 174 LAEQHYQSLAETFSHFGMKVELLTSSVKGVRRREILAKLEQGEIDILVGTHALIQDEVIF 233

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           ++L LVI DEQHRFGV QR  L +K  +P VL MTATPIPRTL +T+ G++D+S I E P
Sbjct: 234 HRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMP 293

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           AGRK I+T     + +D V+  ++  +++G++AY ICP IEE ++ + ++ ++  + L  
Sbjct: 294 AGRKVIETYWAKHDMLDRVLGFVEKEINKGRQAYVICPLIEESEKLDVQNAIDLHSMLTH 353

Query: 513 HFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           H+     + ++HGR+S  +KE +M  F     ++L++TTV+EVG++V +A++++I +AE 
Sbjct: 354 HYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAER 413

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FGL+QLHQLRGRVGRG E S C+L+  P  S+    R+ ++  T DGF+++E+DL+ R  
Sbjct: 414 FGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGP 472

Query: 631 GEILGIKQSGMPKFLIAQPELHD-SLLEIARKDA 663
           G+  G KQSG+P+F +A   +HD   LE AR+DA
Sbjct: 473 GDFFGSKQSGLPEFKVADM-VHDYRALETARQDA 505


>gi|300361942|ref|ZP_07058119.1| DNA helicase RecG [Lactobacillus gasseri JV-V03]
 gi|300354561|gb|EFJ70432.1| DNA helicase RecG [Lactobacillus gasseri JV-V03]
          Length = 679

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 227/675 (33%), Positives = 377/675 (55%), Gaps = 30/675 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           LF P++  +GVG K +  L+ + IN          DLLFY P  + D    P + +I + 
Sbjct: 8   LFEPVTELKGVGAKTATALAGLGINT-------IYDLLFYFPFRYDDLETIP-LDQIEDG 59

Query: 68  RIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           + V + G +      S F  +K R  +K+ ++    +I ++ F+ +   LK+    G+++
Sbjct: 60  QKVLLKGIVVTDPFVSRFGYRKTRLSFKMKIDH---DIIMVNFFNQP-WLKDKVESGKEV 115

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182
            V GK +  +  +       +    +D  F     +YS+   L  +  +K+I  AL   L
Sbjct: 116 AVYGKYQVGRQSL---SGFKLVAEKKDSGFA---PIYSVNRHLKQNKLQKLIDLALEEVL 169

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
           P + E I   L +K    S       +H+P+   +      AR    + E    Q+ L  
Sbjct: 170 PEVGETIPAVLREKYRLLSDQTLVEKMHHPKNGNE---AKIARRSAIFREFFLFQVQLAQ 226

Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +  Q  +++ GI    +    +++++ IPF  +  Q+  + +I  D+    +M R+LQGD
Sbjct: 227 LLSQRDEDVPGIEKRYDLAAVKELIQAIPFELSDDQKKVVNEIFADLHSPRQMRRLLQGD 286

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA+ A+ AA+ AG QA +M P  ILAQQH+  + +  +   + V ++TG+  +
Sbjct: 287 VGSGKTVVAVFAIYAAITAGFQAALMVPTEILAQQHFTKVDELLRPLGVRVALLTGDTKE 346

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +++    +A G  +++IGTHAL Q  + +  L LVI+DEQHRFGV QR  L +K  AP
Sbjct: 347 LEKKEIYRELADGTINVVIGTHALIQKDVHFKNLGLVIIDEQHRFGVNQRNTLIKKGVAP 406

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL LT  GD+ +S+I   P GRKP+ +     +++ EV+E +++ L +
Sbjct: 407 DVLAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLKEVLELMRLQLDK 466

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G + Y + P I E ++S+ ++  +    L  +F   ++ ++HG+M    K  +MDSF  G
Sbjct: 467 GFQIYVVTPLISESEKSDLKNAEDLQARLAHYFKDENVVLLHGQMKGNQKNEIMDSFAAG 526

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ +  P  
Sbjct: 527 KIDILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK- 585

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    R+ ++ +T +GF +AEEDLK R EG++ G  QSG+P+F +       + L  A+
Sbjct: 586 TEIGKKRMKIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNTLVTAQ 645

Query: 661 KDAKHILTQDPDLTS 675
           K+A+ ++  DP+LTS
Sbjct: 646 KEARTLIKADPNLTS 660


>gi|256761066|ref|ZP_05501646.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T3]
 gi|256682317|gb|EEU22012.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T3]
          Length = 678

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 219/630 (34%), Positives = 358/630 (56%), Gaps = 18/630 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRRPYKILLNDGTG 99
           DLL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R    ++ +   
Sbjct: 31  DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLMFRMMQE-HA 88

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
            I + FF +    LK+      +I V GK    +  +  +       +++D   P+    
Sbjct: 89  VINVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHVN 145

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
             +     V L +    E  S   ++ E +  DLL+K       EA   +H P   ++  
Sbjct: 146 KKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE-- 200

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQE 278
            +  A+ R+ ++E    Q+ +  ++KQ K E  G+ I  +    +   + +PF  T +Q+
Sbjct: 201 -SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQK 259

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
               +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH 
Sbjct: 260 KVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQHM 319

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L LV
Sbjct: 320 ESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGLV 379

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR PI
Sbjct: 380 ITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIPI 439

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-- 516
           +T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++   
Sbjct: 440 ETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRY 499

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            + ++HG+M + +K+ +M  FK+   +LL++TTVIEVG++V +A++++I +A+ FGLAQL
Sbjct: 500 QVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQL 559

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G 
Sbjct: 560 HQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFGA 618

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           +QSG+P+F +       ++LE+AR++A  +
Sbjct: 619 RQSGVPQFAVGDIVTDFNILEVARQEASSL 648


>gi|255524279|ref|ZP_05391238.1| ATP-dependent DNA helicase RecG [Clostridium carboxidivorans P7]
 gi|255512104|gb|EET88385.1| ATP-dependent DNA helicase RecG [Clostridium carboxidivorans P7]
          Length = 685

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 243/682 (35%), Positives = 385/682 (56%), Gaps = 45/682 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS-EISEE 67
           +++ +S+ +GVG K +  L K   CG  N    +DLL Y P  +        I+ E +  
Sbjct: 7   VYSDISSIKGVGPKTADNLRK---CGIFN---VMDLLLYFPRDYESISSCGNINGEKTNN 60

Query: 68  RIVTITGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           +++     I      + +  +    I+ +DG   +   +F +    +KN F  G   T+ 
Sbjct: 61  KVIINCKTIRIERDIRTKTGKTLTTIVFHDGNNILKGKWFNQ--PYIKNSFRIGNIYTLM 118

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV---YSLPTGLSVDLFKK---IIVEALS 180
           GKI++ +  + + +P  +  N+Q+++  + E +   Y L +G++ +L  K   II+E + 
Sbjct: 119 GKIEEFRGEMFIANPK-LLKNNQNIS-KVEEKIIPKYPLKSGITNNLVIKLVNIILEDVV 176

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            +  LP++I    + K     + +A  +IHNP    + +    A +RL + EL    + +
Sbjct: 177 IVENLPDYI----INKYKLCDLDKAIRVIHNPINLAELD---EATKRLKFQELFTYSLKI 229

Query: 241 LLMRKQF---KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           L+++  F   KK I   I    K    +   IP+  TK+Q   I++IL D  +   M R+
Sbjct: 230 LMLKNYFNENKKGIAFSI---AKELNALKDRIPYQLTKAQNRVIREILIDEKKSCPMNRL 286

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VALI++   ++ G QAV+MAP  ILA QHY+   K  +   I ++++ G
Sbjct: 287 VQGDVGSGKTIVALISIFNVIKNGYQAVMMAPTEILATQHYDEALKLFEGFGINIKLLCG 346

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++ Q ++++  + +A G+  +IIGTHAL +D +++  L +V+ DEQHRFGV QR +LT K
Sbjct: 347 SVSQKNKQEIKKELASGEIDLIIGTHALIEDDVEFKNLGMVVTDEQHRFGVMQRSRLTNK 406

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                 ++MTATPIPRTL L   GD+++S I E P GR+ I+T  I   + D   +    
Sbjct: 407 GANVDTIVMTATPIPRTLSLYLYGDLNVSIIDELPPGRQKIETQYI---KQDFKYKAYNF 463

Query: 478 VLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKES 532
            L E   G++ Y +CP +EE +E    SV   +  L E +    S+ I+HG+MS   KE 
Sbjct: 464 ALDEIRKGRQVYIVCPLVEENEELKLSSVENLYTELKEEYFKDISVEILHGKMSPKLKEK 523

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M+ FK G  K++++TTVIEVGI+V +A+++IIENAE FGLAQLHQLRGRVGRG+  S C
Sbjct: 524 IMNEFKEGKTKVIVSTTVIEVGINVPNATLMIIENAERFGLAQLHQLRGRVGRGKHKSYC 583

Query: 593 ILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
           IL+      KN     R+ ++K++ DGF IAE+DLK R  GEI G +Q G    ++A   
Sbjct: 584 ILIADI---KNDIIRKRMEIMKSSNDGFFIAEQDLKIRGAGEIFGFRQHGENGLILADVV 640

Query: 651 LHDSLLEIARKDAKHILTQDPD 672
              +LL++A  +AK  LT+  D
Sbjct: 641 QDINLLKLANAEAKR-LTESKD 661


>gi|269122133|ref|YP_003310310.1| ATP-dependent DNA helicase RecG [Sebaldella termitidis ATCC 33386]
 gi|268616011|gb|ACZ10379.1| ATP-dependent DNA helicase RecG [Sebaldella termitidis ATCC 33386]
          Length = 688

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 242/655 (36%), Positives = 367/655 (56%), Gaps = 32/655 (4%)

Query: 7   NPLFAPLSTFR--GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           N LF  L   +  G+GK     L+K+      N     DLL++ P ++ DR     ISE+
Sbjct: 4   NLLFKNLDELKIKGLGKANVSKLNKL------NVRTLYDLLYFFPRAYEDRSNSKNISEV 57

Query: 65  SEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
             +  V + G I + S+  ++  R  Y+  L D TG I L +F  +  + KN+   G ++
Sbjct: 58  LPDEFVVLKGKILKASNNYIKGGRYMYRAWLGDDTGVIELTWFNNRF-VQKNIKI-GDEM 115

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP------LIEAVYSLPTGLSVDLFKKIIVE 177
            V GK KK   R+ +V+P Y     ++V+         I  +YS  + L     +KII E
Sbjct: 116 IVYGKAKK-GMRMQIVNPEY-----KNVSVASLLPGNQILPIYSSTSSLKQGDLRKIIHE 169

Query: 178 ALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           A+     +L E +  +L++K+      +A   +H P      +    A  R   +E+   
Sbjct: 170 AILNFGYLLEENLPDELMKKEGLLPRKDAVINVHFPENE---QLKQKALRRFMLEEIFLL 226

Query: 237 QIALLLMRKQFKKEIGIPINVEG--KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           ++ +L  R +  K       +E   ++ ++ +R +P+  T++Q+  IK+I  ++ +   +
Sbjct: 227 EMGILQSRFEVDKANKGLYKIENNKELVKQFIRELPYELTRAQKKVIKEIYNELVKGKIL 286

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++QGDVGSGKT+V+LI +   VE   Q  IMAP  ILA QHY  I     N  + VE+
Sbjct: 287 NRLIQGDVGSGKTIVSLIMLLYMVENNYQGAIMAPTEILATQHYLGIVDEFNNLNVRVEL 346

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG++    R K L+ I  G   I+IGTHAL ++ I ++ L L+I+DEQHRFGV QR  L
Sbjct: 347 LTGSVKGKKREKLLKEIEAGLVDIVIGTHALIENDIVFHSLGLIIIDEQHRFGVVQRKLL 406

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIE 473
             K    ++++M+ATPIPR+L LT  GD+D+S I E PAGRK IKT  I      +++ +
Sbjct: 407 RDKGELANLIVMSATPIPRSLALTIYGDLDVSVIDELPAGRKQIKTKWIKDQEEKNKMYD 466

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
            +K  + EG++ Y + P IEE +  N +S    F    E F    IA+IHGRM + DK+ 
Sbjct: 467 FIKEKIREGRQVYVVSPLIEESETLNVKSAESTFEEYSEIFKGMEIALIHGRMKNKDKQE 526

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM+ F+ G   +L++TTVIEVG++V +A+I++I +A+ FGL+ LHQLRGRVGRGE  S C
Sbjct: 527 VMEKFRKGNLNILVSTTVIEVGVNVPNATIMVIRDAQRFGLSSLHQLRGRVGRGEYRSYC 586

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             L    +++ S  RL +++NT DGF IAEEDLK R  GEI G KQSG+   L+ 
Sbjct: 587 -FLESETINEISEKRLEIMENTIDGFKIAEEDLKLRNSGEIFGTKQSGVSDLLLT 640


>gi|307292130|ref|ZP_07571996.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0411]
 gi|306496783|gb|EFM66334.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0411]
          Length = 678

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 219/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R  ++++     
Sbjct: 31  DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    LK+      +I V GK    +  +  +       +++D   P+   
Sbjct: 90  --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              +     V L +    E  S   ++ E +  DLL+K       EA   +H P   ++ 
Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
             +  A+ R+ ++E    Q+ +  ++KQ K E  G+ I  +    +   + +PF  T +Q
Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH
Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L L
Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P
Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I+T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++  
Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG+M + +K+ +M  FK+   +LL++TTVIEVG++V +A++++I +A+ FGLAQ
Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
            +QSG+P+F +       ++LE+AR++A
Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645


>gi|256958386|ref|ZP_05562557.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DS5]
 gi|257078303|ref|ZP_05572664.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis JH1]
 gi|294780233|ref|ZP_06745605.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis PC1.1]
 gi|307270576|ref|ZP_07551874.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX4248]
 gi|256948882|gb|EEU65514.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DS5]
 gi|256986333|gb|EEU73635.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis JH1]
 gi|294452776|gb|EFG21206.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis PC1.1]
 gi|306513157|gb|EFM81791.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX4248]
 gi|315034810|gb|EFT46742.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0027]
 gi|329575686|gb|EGG57213.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1467]
          Length = 678

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 218/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R  ++++     
Sbjct: 31  DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    LK+      +I V GK    +  +  +       +++D   P+   
Sbjct: 90  --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              +     V L +    E  S   ++ E +  DLL+K       EA   +H P   ++ 
Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LIEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
             +  A+ R+ ++E    Q+ +  ++KQ K E  G+ +  +    +   + +PF  T +Q
Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAVQYDVDRLKTFTQGLPFELTGAQ 258

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH
Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L L
Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P
Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I+T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++  
Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG+M + +K+ +M  FK+   +LL++TTVIEVG++V +A++++I +A+ FGLAQ
Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
            +QSG+P+F +       ++LE+AR++A
Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645


>gi|189463789|ref|ZP_03012574.1| hypothetical protein BACINT_00122 [Bacteroides intestinalis DSM
           17393]
 gi|189438739|gb|EDV07724.1| hypothetical protein BACINT_00122 [Bacteroides intestinalis DSM
           17393]
          Length = 698

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 241/676 (35%), Positives = 379/676 (56%), Gaps = 31/676 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +N  + +     DLL+Y P  ++DR     I EI      + + G I
Sbjct: 14  GVGPQRASVLNKELNIYSLH-----DLLYYFPYKYVDRSRIYYIHEIDGTMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F +  + L   +   ++  V GK      RI
Sbjct: 69  LGFETIGEGRQRRLIAHFSDGTGIVDLVWF-QGIKFLVGKYKVHQEYIVFGKPSVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRL-PVLPEWIE 190
            + HP     +   ++   ++  Y+       + L+    +K++   + +L   LPE + 
Sbjct: 128 NIAHPDIDNASELKLSTMGLQPYYNTTEKMKRSSLNSHAIEKMMSAVVQQLREPLPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             +L +     + EA   IH P      E    A+ RL ++EL   Q+ +L   K  +++
Sbjct: 188 PAILTEHHLMPLTEALMNIHFPANP---ELLRKAQYRLKFEELFYVQLNILRYAKDRQRK 244

Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
             G      G+I      +N+PF  T +Q+  +K+I +D+    +M R+LQGDVGSGKTL
Sbjct: 245 YRGYVFETVGEIFNTFYAKNLPFELTGAQKRVLKEIRRDVGSGKQMNRLLQGDVGSGKTL 304

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL++M  A++ G QA +MAP  ILA QH+E I++      I VE++TG++    R   L
Sbjct: 305 VALMSMLIALDNGYQACMMAPTEILANQHFETIRELLYGMDIRVELLTGSVKGKKREAIL 364

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427
             +  G   I+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L T+ A  PHVL+MT
Sbjct: 365 TGLLTGDVRILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRARLWTKNAQPPHVLVMT 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSEGK 483
           ATPIPRTL +T  GD+D+S I E P GRKPI T    I++ D     + + +   ++EG+
Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIVT----IHKYDAHRVSLYQSVHRQIAEGR 480

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I+E ++ + +++ E +  + E F    +  +HG+M  ++K++ M  F +G  
Sbjct: 481 QVYIVYPLIKESEKIDLKNLEEGYLHICEEFPGCKVCKVHGKMKAVEKDAQMQLFVSGEA 540

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+    L +
Sbjct: 541 QIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVTGYKLVE 600

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARK 661
            +  RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R 
Sbjct: 601 ETRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVRN 660

Query: 662 DAKHILTQDPDLTSVR 677
            A+ ++  DP  T +R
Sbjct: 661 VAEEVVDADP--TGIR 674


>gi|239944591|ref|ZP_04696528.1| ATP-dependent DNA helicase RecG [Streptomyces roseosporus NRRL
           15998]
 gi|239991053|ref|ZP_04711717.1| ATP-dependent DNA helicase RecG [Streptomyces roseosporus NRRL
           11379]
 gi|291448054|ref|ZP_06587444.1| ATP-dependent DNA helicase RecG [Streptomyces roseosporus NRRL
           15998]
 gi|291351001|gb|EFE77905.1| ATP-dependent DNA helicase RecG [Streptomyces roseosporus NRRL
           15998]
          Length = 734

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 226/694 (32%), Positives = 369/694 (53%), Gaps = 78/694 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100
           DLL ++P  + +R     ++++  +  VT+   ++     +F   + +  ++ L DG+G 
Sbjct: 31  DLLHHYPRRYEERGKLTALADLPLDEHVTVVAQVADARILTFNNGRGKRLEVTLTDGSGR 90

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-------- 152
           + L+FF             GR+    GK+     ++ + HP Y   ++ D +        
Sbjct: 91  LQLVFFGHGVHKPHKELLPGRQAMFAGKVSVFNRKMQLAHPTYQLLDASDADEATEAVDA 150

Query: 153 --------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
                   +P  + + S     +VD       +A+  LP         L + + F  + E
Sbjct: 151 FAGRLLPIYPACKQLDSWRIAKAVDAVLPSAQDAVDPLPA-------SLREGRGFTPLPE 203

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
           A   +H P+   D E    A+ RL +DE    Q+AL   R+++  +  +P      +A  
Sbjct: 204 ALLKVHRPQTKADIE---DAKARLKWDEAFVLQVAL--ARRRYA-DTQLPAAARRPVADG 257

Query: 265 ILR----NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +L      +PF+ T+ QE   K+I  D++ ++ M R+LQG+VGSGKT+VAL AM A V+A
Sbjct: 258 LLDAFDAKLPFTLTEGQEKVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDA 317

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYT-------------QNTQIIVEIITGNMPQAHRRKA 367
           GGQA ++AP  +LAQQH+  I +               Q T+++  ++TG+M  A RR+A
Sbjct: 318 GGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSEQGTKVV--LLTGSMGTAARRQA 375

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLM 426
           L  +  G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR  L  K    PH+L+M
Sbjct: 376 LLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVM 435

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEG 482
           TATPIPRT+ +T  GD++ S + + PAGR PI + ++P       +    ER++  +  G
Sbjct: 436 TATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKDKPHFLARAWERVREEVGNG 495

Query: 483 KKAYWICPQIEEKKESNFR--------------------SVVERFNSLHEHFTS--SIAI 520
            +AY +CP+I +  E                        +V+E  + L +   +  ++ +
Sbjct: 496 HQAYVVCPRIGDDAEEAEGKKGKAKKKAAEEDPEKRPPLAVLEIADELRKGALAGLTVEV 555

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGRM   +K+ VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLR
Sbjct: 556 LHGRMHPDEKDDVMRRFAAGDVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLR 615

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG     C+L+     +  +  RLS +  T DGF ++  DL+QR+EG++LG  QSG
Sbjct: 616 GRVGRGSAAGLCLLVSEAHEASPARARLSAVAATLDGFELSRIDLEQRREGDVLGQAQSG 675

Query: 641 MPKFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673
           +   L     + D  ++  AR++A  I+  DP+L
Sbjct: 676 VRSSLRMLTVIDDEEVIAAAREEAVAIVAADPEL 709


>gi|315167213|gb|EFU11230.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1341]
          Length = 678

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 219/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R  ++++     
Sbjct: 31  DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    LK+      +I V GK    +  +  +       +++D   P+   
Sbjct: 90  --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              +     V L +    E  S   ++ E +  DLL+K       EA   +H P   ++ 
Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
             +  A+ R+ ++E    Q+ +  ++KQ K E  G+ I  +    +   + +PF  T +Q
Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH
Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L L
Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P
Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I+T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++  
Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG+M + +K+ +M  FK+   +LL++TTVIEVG++V +A++++I +A+ FGLAQ
Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
            +QSG+P+F +       ++LE+AR++A
Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645


>gi|168207257|ref|ZP_02633262.1| ATP-dependent DNA helicase RecG [Clostridium perfringens E str.
           JGS1987]
 gi|170661340|gb|EDT14023.1| ATP-dependent DNA helicase RecG [Clostridium perfringens E str.
           JGS1987]
          Length = 690

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 245/678 (36%), Positives = 378/678 (55%), Gaps = 46/678 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           ++  +   +GVG K    L+K+           +DLL Y P     R Y     +IS   
Sbjct: 16  IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFP-----RDYEFLNDDIS--- 61

Query: 69  IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEML---------KNVF 117
              + G IS   +    K + Y   I   +G    T+ F Y   +++         K  F
Sbjct: 62  ---LNGDISDEKAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQPYIKRNF 118

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G +  + GK KK+ N + +++P       ++ N   I  +Y+L  GL+  +  K+I E
Sbjct: 119 ILGNEYNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINE 175

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
            L  + ++ E +  ++++K    S+ +A   IH P    + +    A  RL + EL    
Sbjct: 176 ILKNM-IIKENLPDEIVKKYKLISLDKAIRSIHFPEGRGELQ---SAINRLKFQELFTYS 231

Query: 238 IALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + +++M+   KKE  GI   +   + + +  ++P++ T +Q   +++IL D  +   M R
Sbjct: 232 LKIIMMKAHIKKENSGISFKM-SPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNR 290

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVALI+M      G Q V+MAP  ILA QHY   KKY     + +E++T
Sbjct: 291 LVQGDVGSGKTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLDQFGVDIELLT 350

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+  +  +++  E+IA G+  ++IGTHA+ QD ++   L LV+ DEQHRFGV+QR +L  
Sbjct: 351 GSTKEKEKKRIKEKIASGKEIMLIGTHAVIQDDVELNNLGLVVTDEQHRFGVEQRSRLIN 410

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERL 475
           K     VL+MTATPIPRTL L    D+DIS I E P GRKPI T+++ +N R+      L
Sbjct: 411 KNKRADVLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFAL 470

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533
           K V  +G++ Y + P IEE ++ N  SV + +  L         I I+HG+M+  DK+ +
Sbjct: 471 KEV-EKGRQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMAGKDKDKI 529

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +++FKNG  K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE  S CI
Sbjct: 530 INTFKNGEIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCI 589

Query: 594 LLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           L+ +   +KN  T  R+ ++  + DGF IAEEDLK R  GE+ G++Q G   F++A    
Sbjct: 590 LIAN---TKNDITRRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVD 646

Query: 652 HDSLLEIARKDAKHILTQ 669
             ++L+ A  +AK I+  
Sbjct: 647 DINILKCANHEAKLIVNN 664


>gi|296185398|ref|ZP_06853808.1| ATP-dependent DNA helicase RecG [Clostridium carboxidivorans P7]
 gi|296050232|gb|EFG89656.1| ATP-dependent DNA helicase RecG [Clostridium carboxidivorans P7]
          Length = 681

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 243/682 (35%), Positives = 385/682 (56%), Gaps = 45/682 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS-EISEE 67
           +++ +S+ +GVG K +  L K   CG  N    +DLL Y P  +        I+ E +  
Sbjct: 3   VYSDISSIKGVGPKTADNLRK---CGIFN---VMDLLLYFPRDYESISSCGNINGEKTNN 56

Query: 68  RIVTITGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           +++     I      + +  +    I+ +DG   +   +F +    +KN F  G   T+ 
Sbjct: 57  KVIINCKTIRIERDIRTKTGKTLTTIVFHDGNNILKGKWFNQ--PYIKNSFRIGNIYTLM 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV---YSLPTGLSVDLFKK---IIVEALS 180
           GKI++ +  + + +P  +  N+Q+++  + E +   Y L +G++ +L  K   II+E + 
Sbjct: 115 GKIEEFRGEMFIANPK-LLKNNQNIS-KVEEKIIPKYPLKSGITNNLVIKLVNIILEDVV 172

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            +  LP++I    + K     + +A  +IHNP    + +    A +RL + EL    + +
Sbjct: 173 IVENLPDYI----INKYKLCDLDKAIRVIHNPINLAELD---EATKRLKFQELFTYSLKI 225

Query: 241 LLMRKQF---KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           L+++  F   KK I   I    K    +   IP+  TK+Q   I++IL D  +   M R+
Sbjct: 226 LMLKNYFNENKKGIAFSI---AKELNALKDRIPYQLTKAQNRVIREILIDEKKSCPMNRL 282

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VALI++   ++ G QAV+MAP  ILA QHY+   K  +   I ++++ G
Sbjct: 283 VQGDVGSGKTIVALISIFNVIKNGYQAVMMAPTEILATQHYDEALKLFEGFGINIKLLCG 342

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++ Q ++++  + +A G+  +IIGTHAL +D +++  L +V+ DEQHRFGV QR +LT K
Sbjct: 343 SVSQKNKQEIKKELASGEIDLIIGTHALIEDDVEFKNLGMVVTDEQHRFGVMQRSRLTNK 402

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                 ++MTATPIPRTL L   GD+++S I E P GR+ I+T  I   + D   +    
Sbjct: 403 GANVDTIVMTATPIPRTLSLYLYGDLNVSIIDELPPGRQKIETQYI---KQDFKYKAYNF 459

Query: 478 VLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKES 532
            L E   G++ Y +CP +EE +E    SV   +  L E +    S+ I+HG+MS   KE 
Sbjct: 460 ALDEIRKGRQVYIVCPLVEENEELKLSSVENLYTELKEEYFKDISVEILHGKMSPKLKEK 519

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M+ FK G  K++++TTVIEVGI+V +A+++IIENAE FGLAQLHQLRGRVGRG+  S C
Sbjct: 520 IMNEFKEGKTKVIVSTTVIEVGINVPNATLMIIENAERFGLAQLHQLRGRVGRGKHKSYC 579

Query: 593 ILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
           IL+      KN     R+ ++K++ DGF IAE+DLK R  GEI G +Q G    ++A   
Sbjct: 580 ILIADI---KNDIIRKRMEIMKSSNDGFFIAEQDLKIRGAGEIFGFRQHGENGLILADVV 636

Query: 651 LHDSLLEIARKDAKHILTQDPD 672
              +LL++A  +AK  LT+  D
Sbjct: 637 QDINLLKLANAEAKR-LTESKD 657


>gi|315146597|gb|EFT90613.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX4244]
          Length = 678

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 218/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R  ++++     
Sbjct: 31  DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    LK+      +I V GK    +  +  +       +++D   P+   
Sbjct: 90  --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              +     V L +    E  S   ++ E +  DLL+K       EA   +H P   ++ 
Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
             +  A+ R+ ++E    Q+ +  ++KQ K E  G+ +  +    +   + +PF  T +Q
Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAVQYDVDRLKTFTQGLPFELTGAQ 258

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH
Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L L
Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P
Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I+T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++  
Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG+M + +K+ +M  FK+   +LL++TTVIEVG++V +A++++I +A+ FGLAQ
Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
            +QSG+P+F +       ++LE+AR++A
Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645


>gi|293389090|ref|ZP_06633562.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis S613]
 gi|291081558|gb|EFE18521.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis S613]
          Length = 678

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 219/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R  ++++     
Sbjct: 31  DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    LK+      +I V GK    +  +  +       +++D   P+   
Sbjct: 90  --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              +     V L +    E  S   ++ E +  DLL+K       EA   +H P   ++ 
Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
             +  A+ R+ ++E    Q+ +  ++KQ K E  G+ I  + +  +   + +PF  T +Q
Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVERLKTFTQGLPFELTGAQ 258

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH
Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L L
Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P
Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I+T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++  
Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG+M + +K+ +M  FK+   +LL +TTVIEVG++V +A++++I +A+ FGLAQ
Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLFSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
            +QSG+P+F +       ++LE+AR++A
Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645


>gi|261419384|ref|YP_003253066.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y412MC61]
 gi|319766199|ref|YP_004131700.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y412MC52]
 gi|261375841|gb|ACX78584.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y412MC61]
 gi|317111065|gb|ADU93557.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y412MC52]
          Length = 682

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 231/670 (34%), Positives = 377/670 (56%), Gaps = 37/670 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G++ +  L+ I   G A      +LL Y P  + D + +  ++ +  E  VT
Sbjct: 8   PVTAVKGIGEETAAALADI---GIAT---IGELLAYAPYRY-DDYEQKDLAAVRHEEKVT 60

Query: 72  ITG--YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G  Y +   ++  +K+      +      IT++ F R    LK        +TV GK 
Sbjct: 61  VEGKVYSAPLLTYYGKKKSRLSFRMLADRYLITVVCFNRP--YLKEKIALNETVTVIGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNF------PLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            + +  I          N+ ++ F        IE VYS+ + L+V   ++++  A  +  
Sbjct: 119 DRHRQTI----------NAYELRFGPAPETTGIEPVYSVRSPLTVKTMRRLMKAAFEQFG 168

Query: 184 V-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             +P+ +   L +        EA   +H PR  ++      AR RL Y+E L  Q+ +  
Sbjct: 169 EHIPDPLPPALRRAYRLVDKQEALRALHFPRTREELHQ---ARRRLIYEEFLLYQLKMQA 225

Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +R+  + E  G+  +   +     L  +PF  T +Q   I +IL DM    +M R+LQGD
Sbjct: 226 LRRLMRDERRGVVHSFSEERLSSFLSGLPFVLTNAQRRVIGEILADMRSPRQMNRLLQGD 285

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA +A+ AA  +G Q  +M P  ILA+QH   + +   +T + + ++T ++  
Sbjct: 286 VGSGKTVVAAVALYAAALSGFQGALMVPTEILAEQHARSLAELFADTDVTIALLTSSVKG 345

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R+  L  +  G   I++GTHAL Q+ +Q+ +L LVI DEQHRFGV+QR  L +K  AP
Sbjct: 346 KQRKAVLAELEEGTIDIVVGTHALIQEGVQFRRLGLVITDEQHRFGVEQRRVLREKGHAP 405

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL +T+ GD+D+S + E PAGRK ++T  +  ++   V++ ++  L  
Sbjct: 406 DVLMMTATPIPRTLAITAFGDMDVSVLDEMPAGRKKVETYWVKHHQFSRVLDFIEKELRR 465

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKN 539
           G +AY ICP IEE  + + ++ ++  + L  ++     I ++HGR+S  +KE VM +F  
Sbjct: 466 GHQAYVICPLIEESDKLDVQNAIDVHSQLVHYYRGKYEIGLMHGRLSADEKERVMRAFSE 525

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+  S CIL+  P 
Sbjct: 526 NRIHVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDAQSYCILIADPK 585

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEI 658
            S+    R+ ++  T DGF++AE+DL+ R  G+  G KQSG+P+F    P +HD  +LE+
Sbjct: 586 -SEVGKERMRIMTETADGFVLAEKDLELRGPGDFFGTKQSGLPEFRYGDP-VHDYRILEV 643

Query: 659 ARKDAKHILT 668
           AR+DA  +++
Sbjct: 644 ARRDAAKLVS 653


>gi|56419721|ref|YP_147039.1| ATP-dependent DNA helicase RecG [Geobacillus kaustophilus HTA426]
 gi|56379563|dbj|BAD75471.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426]
          Length = 682

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 230/670 (34%), Positives = 375/670 (55%), Gaps = 37/670 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G++ +  L+ I       E     LL Y P  + D + +  ++ +  E  VT
Sbjct: 8   PVTAVKGIGEETAAALADI-GIATVGE-----LLAYAPYRY-DDYEQKDLAAVRHEEKVT 60

Query: 72  ITG--YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G  Y +   ++  +K+      +      IT++ F R    LK        +TV GK 
Sbjct: 61  VEGKVYSAPLLTYYGKKKSRLSFRMLADRYLITVVCFNRP--YLKEKIALNETVTVIGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNF------PLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            + +  I          N+ ++ F        IE VYS+ + L+V   ++++  A  +  
Sbjct: 119 DRHRQTI----------NAYELRFGPAPETTGIEPVYSVRSPLTVKTMRRLMKAAFEQFG 168

Query: 184 V-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             +P+ +   L +        EA   +H PR  ++      AR RL Y+E L  Q+ +  
Sbjct: 169 EHIPDPLPPALRRAYRLVDKQEALRALHFPRTREELHQ---ARRRLIYEEFLLYQLKMQA 225

Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +R+  + E  G+  +   +     L  +PF  T +Q   I +IL DM    +M R+LQGD
Sbjct: 226 LRRLMRDERRGVVHSFSEERLSSFLSGLPFVLTNAQRRVIGEILADMRSPRQMNRLLQGD 285

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA +A+ AA  +G Q  +M P  ILA+QH   + +   +T + + ++T ++  
Sbjct: 286 VGSGKTVVAAVALYAAALSGFQGALMVPTEILAEQHARSLAELFADTDVTIALLTSSVKG 345

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R+  L  +  G   I++GTHAL Q+ +Q+ +L LVI DEQHRFGV+QR  L +K  AP
Sbjct: 346 KQRKAVLAELEEGTIDIVVGTHALIQEGVQFRRLGLVITDEQHRFGVEQRRVLREKGHAP 405

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL +T+ GD+D+S + E PAGRK ++T  +  ++   V++ ++  L  
Sbjct: 406 DVLMMTATPIPRTLAITAFGDMDVSVLDEMPAGRKKVETYWVKHHQFSRVLDFIEKELRR 465

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKN 539
           G +AY ICP IEE  + + ++ ++  + L  ++     I ++HGR+S  +KE VM +F  
Sbjct: 466 GHQAYVICPLIEESDKLDVQNAIDVHSQLVHYYRGKYEIGLMHGRLSADEKERVMRAFSE 525

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+  S CIL+  P 
Sbjct: 526 NRIHVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDAQSYCILIADPK 585

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEI 658
            S+    R+ ++  T DGF++AE+DL+ R  G+  G KQSG+P+F    P +HD  +LE+
Sbjct: 586 -SEVGKERMRIMTETADGFVLAEKDLELRGPGDFFGTKQSGLPEFRYGDP-VHDYRILEV 643

Query: 659 ARKDAKHILT 668
           AR+DA  +++
Sbjct: 644 ARRDAAKLVS 653


>gi|332293535|ref|YP_004432144.1| ATP-dependent DNA helicase RecG [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171621|gb|AEE20876.1| ATP-dependent DNA helicase RecG [Krokinobacter diaphorus 4H-3-7-5]
          Length = 700

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 247/704 (35%), Positives = 369/704 (52%), Gaps = 39/704 (5%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M P+FL     P+   +GVG   +  L   +         F DL+   P+ +ID+    K
Sbjct: 1   MNPTFLQ---TPIDYLKGVGPNRADLLRSELGIHT-----FQDLMHLFPNRYIDKTQYYK 52

Query: 61  ISEISEERI-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I E+      V I G  S     + + RR       D TG++ L++F R  + ++     
Sbjct: 53  IGELERNNADVQIIGKFSGLKMIEGKGRRLVATF-KDETGQMELVWF-RGHKWIRESIKL 110

Query: 120 GRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
                + GK         M HP   +  + +      ++ VY     LS       +V  
Sbjct: 111 NTPYVIFGKCNYYNGNFSMPHPEMELLADHEKSIKSAMQPVYPSTEKLSNRGITNKVVNG 170

Query: 179 LSRLPVLP------EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           + +   L       E + K +L +       EA   +H P+     E  + A+ RL ++E
Sbjct: 171 VMQTLFLECKNHLFESLSKPILTELKLMPKREALLNVHFPQSQ---EHLARAQYRLKFEE 227

Query: 233 LLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQ 290
               Q+ L       K +I G P    G        + +PF  T +Q+  +K+I  D+  
Sbjct: 228 FFYIQLQLAFKNVNHKTKIKGYPFEKIGPNFTTFYNDHLPFELTGAQKRVLKEIRHDLGT 287

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
             +M R+LQGDVGSGKT+VAL++M  A++ G QA +MAP  ILA QHY  +K+  +    
Sbjct: 288 NAQMNRLLQGDVGSGKTIVALMSMLMALDNGFQACLMAPTAILAVQHYHGLKELCKELNT 347

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            + ++ G+   + RR   E++ +G+ +I+IGTHAL +D +++  L L ++DEQHRFGV+Q
Sbjct: 348 SISLLQGSTKTSKRRIIHEQLENGELNILIGTHALLEDKVKFKNLGLAVIDEQHRFGVKQ 407

Query: 411 RLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           R KL  K    PHVL+MTATPIPRTL +T  GD+D+S I E P GRK IKTV    +R D
Sbjct: 408 RSKLWHKNEYPPHVLVMTATPIPRTLAMTVYGDLDVSVIDELPPGRKSIKTV----HRYD 463

Query: 470 EVIERLKVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAI 520
               RLKV       ++ G++ Y + P I+E +  +++ +++ + S+   F      I+I
Sbjct: 464 S--NRLKVFKFIRDEIALGRQVYIVYPLIQESEAMDYKDLMDGYESISREFPMPKYQISI 521

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG+M   DKE  M+ F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLR
Sbjct: 522 VHGQMKPADKEIEMNRFIKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLR 581

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG E S CIL+    LS +S  RL  +  T DGF IAE DLK R  G+I G +QSG
Sbjct: 582 GRVGRGAEQSYCILMTSHKLSSDSKVRLETMTRTNDGFEIAEVDLKLRGPGDITGTQQSG 641

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
                IA     + +L++AR  A  ++  DP       Q IR +
Sbjct: 642 ALNLKIADIIRDNDILKVARSYAWAVVKDDPTFKKEENQIIRFM 685


>gi|307276670|ref|ZP_07557788.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX2134]
 gi|306506780|gb|EFM75932.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX2134]
 gi|327536226|gb|AEA95060.1| DNA helicase RecG [Enterococcus faecalis OG1RF]
          Length = 678

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 218/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DLL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R  ++++     
Sbjct: 31  DLLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    LK+      +I V GK    +  +  +       +++D   P+   
Sbjct: 90  --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              +     V L +    E  S   ++ E +  DLL+K       EA   +H P   ++ 
Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
             +  A+ R+ ++E    Q+ +  ++KQ K E  G+ +  +    +   + +PF  T +Q
Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAVQYDVDRLKTFTQGLPFELTGAQ 258

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH
Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L L
Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P
Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I+T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++  
Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG+M + +K+ +M  FK+   +LL++TTVIEVG++V +A++++I +A+ FGLAQ
Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
            +QSG+P+F +       ++LE+AR++A
Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645


>gi|319401480|gb|EFV89690.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis FRI909]
          Length = 682

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 222/659 (33%), Positives = 362/659 (54%), Gaps = 20/659 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VT+
Sbjct: 13  LDKIKGIGPKRLALLEEL------NIKSVEDLVLYLPTRYEDNTV-IDLNQADDQATVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +    +     R   K+ ++     I +   +     LK        +T+ GK  + 
Sbjct: 66  QGEVYSSPTVAFFGRNKSKLTVHLMINHIAVKCVFFNQPYLKKKLELNSIVTIKGKWNRN 125

Query: 133 KNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
           K  I   + + IF N Q +     +E VY +  G+     +  I +ALS + +  EW+  
Sbjct: 126 KQEI---NGNRIFFNDQKNQEDAHLEPVYRVKEGIKQKQLRDNIRQALSDVTI-HEWLTD 181

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKE 250
           DL +K    ++A     +H+P   ++      AR   A+ EL   ++ +  L R +   +
Sbjct: 182 DLREKYKLETLAYTIQTLHHPIDKQNL---LRARRTYAFTELFMFELRMQWLNRLEKTSD 238

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             I IN +    ++ + ++PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT+VA
Sbjct: 239 EAIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVA 298

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            I M A   AG Q+ +M P  ILA+QH E + +   NT + V ++TG++    RR  LE+
Sbjct: 299 AICMYALKTAGYQSALMVPTEILAEQHAESLMQLFGNT-MNVALLTGSVKGKKRRLLLEQ 357

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           + +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MTATP
Sbjct: 358 LENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMTATP 417

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL ++  G++D+S I + P GRKPIKT      + D+V+ ++   L +G++AY ICP
Sbjct: 418 IPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICP 477

Query: 491 QIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            IE  +   + ++VV  + SL   +    + ++HG+M+  DK+ VM  F      +L++T
Sbjct: 478 LIESSEHLEDVQNVVALYESLQSDYGNEKVGLLHGKMTAEDKDQVMQKFSEHEIDILVST 537

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R+
Sbjct: 538 TVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERM 596

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 597 TIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANIVEDYRMLEVARDEAAELI 655


>gi|290889928|ref|ZP_06553015.1| hypothetical protein AWRIB429_0405 [Oenococcus oeni AWRIB429]
 gi|290480538|gb|EFD89175.1| hypothetical protein AWRIB429_0405 [Oenococcus oeni AWRIB429]
          Length = 676

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 237/697 (34%), Positives = 385/697 (55%), Gaps = 38/697 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           LF  ++   GVG+K +  L +  I+N          DLL Y+P  + D   R   S+  +
Sbjct: 3   LFDSITELSGVGQKRAEILKQLGILNIE--------DLLTYYPFRYDDLESRLP-SQTDD 53

Query: 67  ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + VT  G +S     S F  +K R  +++L+  G   I++ FF      LK     G++
Sbjct: 54  GQKVTFKGMVSSQPTISRFGYKKSRIAFRLLI--GHDNISVSFF--NQPWLKEQIEIGKE 109

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           + + G    +   +       I H   D     + A+Y     +     +++I  A ++ 
Sbjct: 110 MAIFGTYDAVHEAL---KGQRIIHAENDS----LAAIYPSNQAIHQKTIQQLIENAYAKY 162

Query: 183 P-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              + + I + L+      S  +  + +H P  A++ +    AR   A++E    Q+ L 
Sbjct: 163 ADQINDIIPRRLMLAYRLLSRKKQIHDMHFPDSAENAKL---ARRSAAFEEFFIFQMRLQ 219

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           LMR    K  G  I    +I    +  +P+S T +Q+  I++IL D+ +   M R+LQGD
Sbjct: 220 LMRISAGKNRGREIEYNSEILNDFIAKLPYSLTDAQKKVIQEILLDLKRPIHMNRLLQGD 279

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNM 359
           VGSGKT+VA IAM A   AG QA IM P  ILAQQH   +    Q+    + +E++T  +
Sbjct: 280 VGSGKTVVAAIAMLACYSAGLQAAIMVPTEILAQQHAINLSNLYQSAGLNLRIELLTSGL 339

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A RR+ L  +  G+  I +GTHAL Q  + +Y L L ++DEQHRFGV+QR +L ++  
Sbjct: 340 KAAARRQILADLESGEIDIAVGTHALIQADVHFYNLGLAVIDEQHRFGVKQRARLREQGQ 399

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P +L MTATPIPRTL +T+ G++D+S I + P GR+PI T  +  N+ D V + +K  L
Sbjct: 400 NPDILAMTATPIPRTLAITAYGEMDVSTIDQLPNGRRPIITKWVKSNQFDNVFDWVKTQL 459

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           + G + Y + P IEE +  + ++ V  ++ L E      I ++HGR+++ +K+ V++ F 
Sbjct: 460 AAGAQVYVVTPLIEESETLDVQNAVLIYDRLKEELKPYRIGLLHGRLTNDEKQQVINDFS 519

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               ++L+ TTVIEVG+D+ +A+I++I +A+ FG+AQLHQLRGRVGRG++ S  IL+  P
Sbjct: 520 TNRVQVLVTTTVIEVGVDIKNATIMVILDADRFGIAQLHQLRGRVGRGKKQSYAILVSDP 579

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLE 657
             ++    R+  + +T DGF +AE+DLK R  G+++GIKQ+GMP+F +  P +HD  ++E
Sbjct: 580 K-TQYGIDRMEAIVSTNDGFALAEKDLKLRGPGDVIGIKQAGMPEFNVGDP-IHDLKMME 637

Query: 658 IARKDAKHILTQ-DPDLTSVRGQSIRIL-LYLYQYNE 692
            A++ A  I +Q + D      + ++ L L +Y+Y +
Sbjct: 638 TAQQSAIEITSQSNWDADKENAELVKYLSLTMYRYKD 674


>gi|227432482|ref|ZP_03914468.1| ATP-dependent DNA helicase RecG [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351753|gb|EEJ41993.1| ATP-dependent DNA helicase RecG [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 676

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 202/467 (43%), Positives = 291/467 (62%), Gaps = 8/467 (1%)

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
           I N     D E    AR  +A++E    Q+ L L++   K   G  IN + K   K    
Sbjct: 187 IENMHFPADMEQAKLARRSIAFEEFFIFQMRLQLLKLADKNFSGEGINYDSKALNKFEAG 246

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF+ T +Q+  + +IL+D  +   M R+LQGDVGSGKT+VA IA+ A V AG QA +MA
Sbjct: 247 LPFTLTVAQQKVVSEILKDQKRPVHMNRLLQGDVGSGKTVVAAIALYAVVTAGMQAALMA 306

Query: 329 PIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           P  ILAQQH   +    + +   I +E++T  M  A RR+ LE +A G   I++GTHAL 
Sbjct: 307 PTEILAQQHAINLASMFEKSGVDIRIELLTSGMKAAARRQLLEDLADGTIDILVGTHALL 366

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           Q  ++++ L L ++DEQHRFGV QR KL +    P +L MTATPIPRTL +T+ G++D+S
Sbjct: 367 QPDVKFHHLGLAVIDEQHRFGVNQRAKLRENGVNPDILAMTATPIPRTLSITAYGEMDVS 426

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I + P GRK I+T  I  N+ID  I  LK  LSEG +AY + P IEE    + ++    
Sbjct: 427 IIDQLPNGRKQIQTRKISHNQIDSAINFLKQQLSEGAQAYVVTPLIEESAALDVQNAQAM 486

Query: 507 FNSLH-EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           + +L  E    +I ++HGR+S+ +K+++M  FK    ++L+ATTVIEVG+DV +ASI++I
Sbjct: 487 YEALQLELPNDTIGLLHGRLSNDEKKALMADFKRNKIQVLVATTVIEVGVDVPNASIMLI 546

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEE 623
            +A+ FGLAQLHQLRGRVGRG   S  IL+  P   K  Y   RL  +  T DGFL+A++
Sbjct: 547 MDADRFGLAQLHQLRGRVGRGTRQSYTILVADP---KTDYGRARLDAMVETTDGFLLAQK 603

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           DL+ R  G+ILG KQSG+P+F +  P     ++E+A+++A  +++ D
Sbjct: 604 DLELRGSGDILGTKQSGVPEFAVGDPIKDLKMMEVAQQEAISMVSTD 650


>gi|168217017|ref|ZP_02642642.1| ATP-dependent DNA helicase RecG [Clostridium perfringens NCTC 8239]
 gi|182380876|gb|EDT78355.1| ATP-dependent DNA helicase RecG [Clostridium perfringens NCTC 8239]
          Length = 690

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 245/678 (36%), Positives = 377/678 (55%), Gaps = 46/678 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           ++  +   +GVG K    L+K+           +DLL Y P     R Y     +IS   
Sbjct: 16  IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFP-----RDYEFLNDDIS--- 61

Query: 69  IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEML---------KNVF 117
              + G  S   +    K + Y   I   +G    T+ F Y   +++         K  F
Sbjct: 62  ---LNGDTSDEKAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQPYIKRNF 118

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G +  + GK KK+ N + +++P       ++ N   I  +Y+L  GL+  +  K+I E
Sbjct: 119 ILGNEYNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINE 175

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
            L  + ++ E +  ++++K    S+ +A   IH P    + +    A  RL + EL    
Sbjct: 176 ILKNM-IIKENLPDEIVKKYKLISLDKAIRSIHFPAGRGELQ---SAINRLKFQELFTYS 231

Query: 238 IALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + +++M+   KKE  GI   +   + + +  ++P++ T +Q   +++IL D  +   M R
Sbjct: 232 LKIIMMKAHIKKENSGISFKM-SPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNR 290

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVALI+M      G Q V+MAP  ILA QHY   KKY     + +E++T
Sbjct: 291 LVQGDVGSGKTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLDKFGVDIELLT 350

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+  +  +++  E+IA G+  ++IGTHAL QD ++   L LV+ DEQHRFGV+QR +L  
Sbjct: 351 GSTKEKEKKRIKEKIASGKEIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLIN 410

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERL 475
           K     VL+MTATPIPRTL L    D+DIS I E P GRKPI T+++ +N R+      L
Sbjct: 411 KNKRADVLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFAL 470

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533
           K V  +G++ Y + P IEE ++ N  SV + +  L         I I+HG+M+  DK+ +
Sbjct: 471 KEV-EKGRQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMAGKDKDKI 529

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +++FKNG  K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE  S CI
Sbjct: 530 INTFKNGEIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCI 589

Query: 594 LLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           L+ +   +KN  T  R+ ++  + DGF IAEEDLK R  GE+ G++Q G   F++A    
Sbjct: 590 LIAN---TKNDITRRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVD 646

Query: 652 HDSLLEIARKDAKHILTQ 669
             ++L+ A  +AK I+  
Sbjct: 647 DINILKCANHEAKLIVNN 664


>gi|257467419|ref|ZP_05631730.1| ATP-dependent DNA helicase recG [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315918543|ref|ZP_07914783.1| ATP-dependent DNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313692418|gb|EFS29253.1| ATP-dependent DNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 679

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 224/604 (37%), Positives = 351/604 (58%), Gaps = 12/604 (1%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEI 101
           DLL+Y P ++ +R    KI+E+  E    I   +    S   +  R+  K    DG+G +
Sbjct: 30  DLLYYFPRAYDNRSNIKKIAELRMEEYAVIHAKLLHVYSVPTKLGRKMTKATATDGSGFL 89

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            +++F      LK       +    G +K+      M +P +     Q +   ++  +YS
Sbjct: 90  EIVWF--GMPYLKKSLKLQEEYIFVGTVKRSMGAFQMTNPEFKLSKGQKMRGEIL-PIYS 146

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
               LS +  +K + E L    +L E I K++ QK +     +A + IH P   K  E  
Sbjct: 147 SHKNLSQNRLRKYLKEILFENSLLSENIPKEICQKYNILGRNQALSEIHFPSSEKILE-- 204

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK--IAQKILRNIPFSPTKSQES 279
             A+ R A +ELL  ++ +L  R           ++EGK  + ++ L ++PF  TK+Q+ 
Sbjct: 205 -EAKRRFAIEELLIIEMGILKNRFLTDALTQSFYHLEGKKTLVKQYLSSLPFQLTKAQKK 263

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            I +I +D+ Q   + R++QGDVGSGKT+VA++ +   +E G Q  +MAP  ILA QHY 
Sbjct: 264 VITEIYKDLEQGRIVNRLVQGDVGSGKTMVAMVLLLYMIENGYQGALMAPTEILAIQHYL 323

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            I    Q   + VE++TG++    RRK L+ +  G   ++IGTHAL ++ +++++L  ++
Sbjct: 324 GIYSKMQELGLRVELLTGSIRGKKRRKLLDDLKEGNIDLLIGTHALLEEEVRFHQLGFIV 383

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DEQHRFGV QR KL +K    ++L+MTATPIPR+L L+  GD+D+S + E P GR PIK
Sbjct: 384 IDEQHRFGVLQRKKLREKGILTNLLVMTATPIPRSLALSIYGDLDVSILDELPPGRSPIK 443

Query: 460 TVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
           T  I     ++++   ++  LS+GK+AY++ P IEE ++    S++E    + E   +  
Sbjct: 444 TKWISTEEDMEKMYAFIRKQLSQGKQAYFVAPLIEESEKLLLSSILEVEEEVKEKLPNYK 503

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA++HGRM +I+K+ +M  FK     +L++TTVIEVGIDV +A I+ I NAE FGL+ LH
Sbjct: 504 IALLHGRMKNIEKDEIMQRFKQREIDILVSTTVIEVGIDVPNAVIMTILNAERFGLSALH 563

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG++ S C L+     ++ S  RL +++ T+DGF+IAEEDLK R  GEI G++
Sbjct: 564 QLRGRVGRGKDASFCFLISKTQ-NETSKQRLEIMEATQDGFIIAEEDLKMRNAGEIFGLR 622

Query: 638 QSGM 641
           QSG+
Sbjct: 623 QSGL 626


>gi|149011439|ref|ZP_01832686.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764429|gb|EDK71360.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP19-BS75]
          Length = 455

 Score =  363 bits (932), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 189/428 (44%), Positives = 287/428 (67%), Gaps = 10/428 (2%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSGKT+VA 
Sbjct: 16  GLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSGKTVVAG 75

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +AM AAV AG QA +M P  ILA+QH+E ++    N ++   ++TG++  A +R+ LE I
Sbjct: 76  LAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLA--LLTGSLKAAEKREVLETI 133

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+MTATPI
Sbjct: 134 AKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLMMTATPI 193

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +AY I P 
Sbjct: 194 PRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQAYVISPL 253

Query: 492 IEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     +L++TT
Sbjct: 254 IEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTT 313

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +   R+ 
Sbjct: 314 VIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDSGKDRMR 372

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT- 668
           ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A +I + 
Sbjct: 373 IMTETTNGFILAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVASYISSI 432

Query: 669 ----QDPD 672
               +DP+
Sbjct: 433 EAWQEDPE 440


>gi|83589774|ref|YP_429783.1| ATP-dependent DNA helicase RecG [Moorella thermoacetica ATCC 39073]
 gi|83572688|gb|ABC19240.1| ATP-dependent DNA helicase RecG [Moorella thermoacetica ATCC 39073]
          Length = 680

 Score =  363 bits (932), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 235/668 (35%), Positives = 353/668 (52%), Gaps = 24/668 (3%)

Query: 12  PLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
           P++T + VG + +  LS+  I   G        DLL++ P  + DR     ++ ++   +
Sbjct: 6   PVATLKYVGHQRAARLSRLGIQTVG--------DLLWHFPRRYEDRRQLKDLAAVAPGEV 57

Query: 70  VTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           VT+   I      +++ R R  + L+    G    ++F      LK     G  + +TGK
Sbjct: 58  VTVQVTIRAWEEREVRPRLRLIRALIQGRQGTGFAVWF--NQPYLKRQMPPGTGVILTGK 115

Query: 129 IKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-L 185
           ++    R  +    Y  +      ++   I   Y+L  GLS    + +I  AL  +   L
Sbjct: 116 VRYRDYRPEIQVSDYEALGEGDPGLHTGRIVPFYALTAGLSQRWLRLVIHLALEAVAGDL 175

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR- 244
           PE +   L ++       +A   IH P  A        AR RL Y+ELL  ++ L L R 
Sbjct: 176 PEVLPLSLCRRYRLIPRLQALKYIHFPPDAAGLHQ---ARRRLKYEELLIWELGLNLHRV 232

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +Q +   GI       +  +++ ++PF  T +Q  A+ +IL DM     M R+LQGDVGS
Sbjct: 233 QQEQGRQGIAHTPANNLVNRLVDSLPFKLTSAQARALAEILADMEAPRPMARLLQGDVGS 292

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA  AM  AV  G QA +MAP  +LA+QH   + +     ++ V  +TG+ P+  R
Sbjct: 293 GKTVVAAAAMVKAVAGGWQAALMAPTEVLAEQHGRTLGQLLAPLRLPVVTLTGSTPRTER 352

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
              L  +A GQ  +++GTHAL QD + +  L LV++DEQHRFGV QR  L  K   P +L
Sbjct: 353 ENILAGLASGQLPLVVGTHALIQDDVSFKSLGLVVIDEQHRFGVDQRAALQTKGECPDLL 412

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL L   GD+DIS + E P GR+P+ T +I   +       ++  +  G +
Sbjct: 413 VMTATPIPRTLALAIYGDLDISVLDELPPGRQPVATYVITEKQRPRAYRLIEREIRAGHQ 472

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
           AY ICP I+        +       L E       + ++HGR+   +KE VM++F+ G  
Sbjct: 473 AYVICPVIDANDGVAVEAATAMARKLQEEVFPGYPVGLVHGRLRPAEKEEVMNAFREGKI 532

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ATTV+EVG+DV +A++++IE AE  GLAQLHQLRGRVGRG   + C L+     S+
Sbjct: 533 AILVATTVVEVGVDVPNATVMLIEGAERLGLAQLHQLRGRVGRGTAAAYCFLVTRG--SQ 590

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL++L    DGF IAE DL+ R  GE  G +Q G+P+F +AQ      +LE AR+D
Sbjct: 591 AARERLAILTTNRDGFAIAEADLRLRGPGEFFGTRQHGLPEFHLAQLPGDSHILEQARQD 650

Query: 663 AKHILTQD 670
           A+ I  Q+
Sbjct: 651 AREICRQE 658


>gi|315646187|ref|ZP_07899307.1| ATP-dependent DNA helicase RecG [Paenibacillus vortex V453]
 gi|315278386|gb|EFU41702.1| ATP-dependent DNA helicase RecG [Paenibacillus vortex V453]
          Length = 683

 Score =  363 bits (932), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 222/649 (34%), Positives = 361/649 (55%), Gaps = 17/649 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL---QKRRPYKILLNDGTG 99
           DLL Y+P  + D   R  +SE+ +   +TI   I+     Q    + R   K+L  +   
Sbjct: 34  DLLEYYPFRYEDYRLR-SLSEVKDGDRITIQAKIASVPVLQRYGGKSRLTCKMLAENWM- 91

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
             T  +F R    LK+    GR+I +TGK  + + ++ +      F +        ++ V
Sbjct: 92  -FTATWFNR--HFLKDQLTAGREIVLTGKWDQRRMQLTVSESE--FPDKGAFRSGTLQPV 146

Query: 160 YSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           YS+   ++    +K + +AL +   ++PE + + LL+K        A   IH P  +++ 
Sbjct: 147 YSIGGKITQSWIRKTMGQALEQYGEMIPEILPQFLLRKYDLMPRKGAILTIHQPVDSREG 206

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
           +     R R+ Y+EL   Q+ +   R   +  + G+    +    ++ +R+ PF  T +Q
Sbjct: 207 Q---EGRRRMVYEELFLFQLKMQAFRALNRGRMDGVVHTADNATIREFVRSFPFELTDAQ 263

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +IL DM     M R+LQGDVGSGKT+VA IA+   V +G Q  +M P  ILA+QH
Sbjct: 264 KKVELEILHDMRSPYCMNRLLQGDVGSGKTIVAAIALFTTVRSGFQGALMVPTEILAEQH 323

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
              ++K  +   I V ++TG++    R+  L  +  G   +++GTHAL QD + + +L L
Sbjct: 324 MRSLQKLFEPFGITVGLLTGSVTGKKRKDLLASLQMGLIDVVVGTHALIQDDVYFRELGL 383

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           V+ DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ GD+D+S ++E+P GR P
Sbjct: 384 VVTDEQHRFGVNQRSVLRRKGYNPDVLTMTATPIPRTLAITAFGDMDVSTLSERPKGRIP 443

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I T  +    ++ V+  +   + +G++AY I P IEE  + + ++ ++    + + F   
Sbjct: 444 ITTYWVKHELMERVLGFISREVDQGRQAYLIAPLIEESDKLDVQNAIDLHVQMQQAFPKY 503

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++ ++HGRM+  +K+ VM  F +   +LLI+TTV+EVG+DV +A+++II +A+ FGL+QL
Sbjct: 504 AVGLLHGRMTPAEKDEVMRQFYSNEVQLLISTTVVEVGVDVPNATLMIIMDADRFGLSQL 563

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG+  S C+L+  P  S+    R+ V+  TEDGF ++  DL+ R  G+  G 
Sbjct: 564 HQLRGRVGRGQHASYCVLVADPK-SEVGQERMQVMTETEDGFEVSRRDLELRGPGDFFGT 622

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           KQSG+P+F +A       ++E AR DA  +++     TS   + +R  L
Sbjct: 623 KQSGLPEFRLADMVADFKVVEEARGDAAALVSDTAFWTSPEYEPLREFL 671


>gi|269123878|ref|YP_003306455.1| ATP-dependent DNA helicase RecG [Streptobacillus moniliformis DSM
           12112]
 gi|268315204|gb|ACZ01578.1| ATP-dependent DNA helicase RecG [Streptobacillus moniliformis DSM
           12112]
          Length = 689

 Score =  363 bits (932), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 225/614 (36%), Positives = 364/614 (59%), Gaps = 21/614 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+++ P ++ ++     ISE+ +   V I G +   ++    K++  K+L  DG G I 
Sbjct: 39  DLVYFFPRTYENKAKHKPISELIDGENVIIEGKVLIINNAFFGKKKLIKVLFTDGEGLIE 98

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-----IE 157
           L++F   +  +  V   G ++ +TGKI+K +N + +++P Y   NS + N  L     ++
Sbjct: 99  LVWF--NSPYILRVLEVGMELRITGKIRKSRN-LQIINPSYSKINSSNRNIVLNEEDKLD 155

Query: 158 AVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
           +VYSL +G+     KKI+ E L + L +  E + +  + +    S  EA   IH PR   
Sbjct: 156 SVYSLSSGIDQKNMKKIVEEVLKKYLFLFEENLPQKYIVENKLISRTEAIANIHFPRNNF 215

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            +E    A++R+ ++E L  ++ +L  R  +  K      ++    + +K +  + F  T
Sbjct: 216 MYE---EAKKRILFEEALILEMKILKNRYNENIKNYNLYFLDDNKDLVKKYVSGLSFELT 272

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           K Q+  I +I ++++    + R++QGDVGSGKT+++LI +    E   Q VIMAP  ILA
Sbjct: 273 KDQKKIIAEIYKELNNGKIINRLIQGDVGSGKTIISLILLLYMAENNYQGVIMAPTEILA 332

Query: 335 QQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            QHY E +K++ +   I VE++TG+     + +  + + +G  +I IGTH+L +D++++ 
Sbjct: 333 TQHYLEVVKEFDK-LNIRVELLTGSTRAKKKEEIYKNVENGNINISIGTHSLLEDNLKFN 391

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DEQH+FGV QR K+  K    ++++MTATPIPR+L LT  GD+D+S +T  P 
Sbjct: 392 NLGLIIIDEQHKFGVDQRNKIRDKGIYSNLIVMTATPIPRSLALTIYGDLDVSLLTTMPL 451

Query: 454 GRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           GRKPIKT  I  N+ +E  + E +   + EG++ Y + P I +  + N  S VE +    
Sbjct: 452 GRKPIKTKWIK-NKEEENSMYEFIDKKIKEGRQVYVVSPLIVQSDKLNISSAVETYEKYC 510

Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           E F   ++ ++HG++   +KE++M+ FK G   +L++TTV+EVG++V ++SII+I N+E 
Sbjct: 511 EKFPQYTVGLLHGKIKSKEKENIMNEFKEGRIDILVSTTVVEVGVNVPNSSIIVILNSER 570

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FGL+ LHQLRGRVGRGE  S C LL     ++ S  RL V++ T DGF IAEEDLK R  
Sbjct: 571 FGLSSLHQLRGRVGRGEHSSYCFLLSETQ-NEISQKRLQVMEETLDGFKIAEEDLKLRDT 629

Query: 631 GEILGIKQSGMPKF 644
           GEI GIKQSG+ + 
Sbjct: 630 GEIFGIKQSGISEL 643


>gi|293380322|ref|ZP_06626396.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 214-1]
 gi|290923137|gb|EFE00066.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 214-1]
          Length = 678

 Score =  363 bits (932), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 223/686 (32%), Positives = 380/686 (55%), Gaps = 28/686 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +  L      G+       DLLFY P  + +    P + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTTAEL------GSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56

Query: 67  ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + V + G ++     S F  +K R  +K+ ++    ++ ++ F+ +   LKN    G++
Sbjct: 57  GQKVMLKGIVATEAFVSRFGYKKTRLSFKMRIDH---DVIMVNFFNQP-WLKNKIEIGQE 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           + + GK    +  +      ++     D    P+      +     VDL    I + + +
Sbjct: 113 VAIYGKYNVARQSLTAFK--FVAAKENDSGMAPIYPVNRHVKQKKLVDLINVAIDDFIDQ 170

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           +  ++PE + ++    K    I +    +H+P+ + + E    A+    + E    ++ L
Sbjct: 171 VQDIVPEKLRQEYRLLKDQVIIEK----MHHPKNSHEAEL---AKRSAIFREFFIFELQL 223

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+ +   K++G     +     ++ +++PF  +  Q+  + +I  DM    +M R+LQG
Sbjct: 224 ALLTRNDGKQMGYAKKYDLTEIAQLTKSLPFELSDDQKHVVNEIFADMHSDGQMRRLLQG 283

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   + V ++TGN  
Sbjct: 284 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 343

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+    +  G  +++IGTHAL QDS+ + KL LVI+DEQHRFGV QR  L  K   
Sbjct: 344 TLERREIYRELTDGTINVVIGTHALIQDSVIFKKLGLVIIDEQHRFGVGQRQALINKGDQ 403

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P +L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +     +++ EV  +++  L+
Sbjct: 404 PDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQLN 463

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           +G + Y + P I E +  + ++  E    L   F +  + ++HG+M    K+ +M +F  
Sbjct: 464 QGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFAA 523

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ L  P 
Sbjct: 524 GEIDILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK 583

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            + +   R+ ++ +T DGF +AEEDLK R EG++ G  QSG+P+F +     + + L +A
Sbjct: 584 -TDSGKARMKIIASTNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDAVNNYNTLVVA 642

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685
           +K+A+ ++  DPDL+    ++++ +L
Sbjct: 643 QKEARALVAADPDLSDPGHKALKQVL 668


>gi|257876171|ref|ZP_05655824.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC20]
 gi|257810337|gb|EEV39157.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC20]
          Length = 676

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 230/669 (34%), Positives = 385/669 (57%), Gaps = 33/669 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+  +GVG+K +  L+ +       ET   DLL Y+P  + D   R +++EI ++  VT
Sbjct: 5   PLTVLKGVGEKRAQDLASL-----GIET-IEDLLKYYPFRYEDIQER-QLAEIQDQEKVT 57

Query: 72  ITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I G +      + F  +K R    ++ D   ++  + F+ +   LK+      +I V GK
Sbjct: 58  IKGIVVSPPVVNRFGYKKSRLQFRMMQDH--DVFNVSFFNQP-YLKDKVEVSEEIAVYGK 114

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLP 186
               +  +  +    I  +    +F P+     ++   + ++L K+  ++   ++  +LP
Sbjct: 115 WDAKRKGLTGMK---ILGSKSAEDFAPIYHVNKAVRQSVLIELIKQAFLDFGDQITEILP 171

Query: 187 -EWIEK-DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
              IEK  LL +KS      A   +H P   KD + +  A+ R+ ++E    Q+ +  ++
Sbjct: 172 LSLIEKYRLLDRKS------AMFAMHFP---KDPQESHQAKRRVIFEEFFLFQMQIQGLK 222

Query: 245 KQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K  K E  G+ I+ + +  ++  R +PF  T +Q+    +I  D+     M R+LQGDVG
Sbjct: 223 KSEKAEKNGLAIDYDVQRLKEFTRKLPFELTNAQKRVTNEICHDLKSPQHMQRLLQGDVG 282

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA IA+ A + AG Q  +M P  ILAQQH E + +     ++   ++TG+     
Sbjct: 283 SGKTVVAAIALYATMTAGFQGALMVPTEILAQQHLESLNQLFDPLEVTTALLTGSTKPKE 342

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR  LE++A G+  II+GTHAL Q+ + +  L LVI DEQHRFGV QR  L +K   P V
Sbjct: 343 RRVILEQLAAGEIDIIVGTHALIQEGVDFAHLGLVITDEQHRFGVNQRKVLREKGYLPDV 402

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGR P++T  +   + + ++E  +  L++G 
Sbjct: 403 LFMTATPIPRTLAITAYGEMDVSVIDEMPAGRIPVETRWVRPPQFESILEWAQKELAQGH 462

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y ICP IEE +  + ++  E +  L  +F  T  + ++HG+M + +K+S+M++FK   
Sbjct: 463 QMYVICPLIEESEMLDVKNATEIYEQLQSYFSPTYQVGMLHGKMKNQEKDSIMEAFKENQ 522

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P  +
Sbjct: 523 LQILVSTTVIEVGVNVPNATVMLIIDADRFGLAQLHQLRGRVGRGADASYCILIANPK-N 581

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F  A       +LE+A+ 
Sbjct: 582 ETGVERMKIMTETTNGFVVSEKDLQLRGPGEVFGNRQSGLPEFAAADLVADAHILEVAQV 641

Query: 662 DAKHILTQD 670
           +A  +  ++
Sbjct: 642 EAAQLWQKN 650


>gi|325963736|ref|YP_004241642.1| ATP-dependent DNA helicase RecG [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469823|gb|ADX73508.1| ATP-dependent DNA helicase RecG [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 755

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 256/761 (33%), Positives = 391/761 (51%), Gaps = 95/761 (12%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+  R +GK+ +  + K +       T    LL Y P  +++R     I+EI  +  VT+
Sbjct: 7   LALERRIGKRSAAVIEKHLGI-----TTVEGLLNYFPRRYMNRGELTPITEIPRDEDVTL 61

Query: 73  TGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFF----YRKTE--MLKNVFFEG---- 120
              +   ++ ++Q RR     ++++D  G+  L       YR      LK  FF G    
Sbjct: 62  IARVLSSNTRRMQARRGTITDVVVSDDDGKQGLRLVGGTDYRGKAPGTLKISFFNGYKAQ 121

Query: 121 ------RKITVTGKIKKLKNRIIMVHPHYIFHN----SQD---------VNFPLIEAVYS 161
                 R+   +GK+   K  + + +P Y   +    S+D         +  P+  A   
Sbjct: 122 AELLPGRRALFSGKVTSFKGTLGLTNPEYQLLDDDPFSEDGRDPEKIAAMPIPVYPATAK 181

Query: 162 LPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           LP+       +K I   L+ + +  LP+ +   +  ++ F  +A+A+ +IH P  A D++
Sbjct: 182 LPSWR----IQKAISTLLATMDLESLPDPVPASIALREKFMPVADAYRLIHEPESASDWQ 237

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGI---PINVEGKIAQKILRNIPFSPTKS 276
               AR R  Y E L  Q AL   R Q   E      PI  +G +A    R++PF+ T  
Sbjct: 238 Q---ARRRFRYQEALVLQSALARRRAQLASEEATARRPIP-DGLLA-GFDRSLPFTLTAG 292

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q +  + +  ++++   M R+LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LA Q
Sbjct: 293 QAAVGETLRAELARDVPMNRLLQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQ 352

Query: 337 HYEFIKK------------YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           H+E I++                  + V ++TG+MP A R++AL   A G A I+IGTHA
Sbjct: 353 HFESIRRTLGPLSGDGLLGGMDGASVQVTLLTGSMPTAARKQALLDAASGTAGIVIGTHA 412

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDI 443
           L  D++ +Y L L++VDEQHRFGV+QR  L  KA   PH+L+MTATPIPRT+ +T  GD+
Sbjct: 413 LLSDNVSFYDLGLIVVDEQHRFGVEQRDALRAKARKPPHLLVMTATPIPRTVAMTVFGDL 472

Query: 444 DISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           + S + E PAGR PI T ++ +      +  +  R +  +  G + Y +CP+I    + +
Sbjct: 473 ETSVLDELPAGRAPIATHLVGLAENPGWVRRIWARAREEIDAGHQVYVVCPRIGTDDDGD 532

Query: 500 FR-----------------------SVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVM 534
           F                         VVE    L E   S +  A +HGR     K  VM
Sbjct: 533 FSPGEAAPAAADADDDSGRELASVTGVVEHL--LEEPALSGVPLAPLHGRQEPDMKFGVM 590

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F     KLL++TTVIEVG+DV +A++++I +A+ FG++QLHQLRGRVGRG    +C+L
Sbjct: 591 EDFAANRIKLLVSTTVIEVGVDVHNATLMVILDADRFGISQLHQLRGRVGRGGLPGTCLL 650

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHD 653
           +        S  RL  +  T DGF ++EEDLK R+EG+ILG  QSG    L + +   H 
Sbjct: 651 VTALEPGHPSRRRLEAVAATTDGFALSEEDLKLRREGDILGASQSGGRSTLKLLRVLEHG 710

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
            ++  AR+DA+ I+  DPDL++    +  I  YL    EAF
Sbjct: 711 DVIARAREDAQQIVGGDPDLSANPELADAIENYLNPEKEAF 751


>gi|326798578|ref|YP_004316397.1| ATP-dependent DNA helicase RecG [Sphingobacterium sp. 21]
 gi|326549342|gb|ADZ77727.1| ATP-dependent DNA helicase RecG [Sphingobacterium sp. 21]
          Length = 703

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 246/699 (35%), Positives = 377/699 (53%), Gaps = 44/699 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG + +  L K +         F DL+ Y+P  +IDR    KI ++  + 
Sbjct: 8   LHTPIEYLKGVGPQKADLLKKELAI-----YTFGDLVHYYPFRYIDRTKYYKIKDLHPDM 62

Query: 69  -IVTITGYISQHSSFQLQKRRPYKIL--LNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
             V I G ++  +  Q+ ++R  +++    D TG + L++F +    L+     G    +
Sbjct: 63  PSVQILGRLT--AVEQIGQKRGKRLVAQFKDETGLMELVWF-QSIRWLEKSLKIGSVYII 119

Query: 126 TGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            GK      +  M HP    +N+  ++V  P ++ VY     L         ++ L    
Sbjct: 120 FGKPTLFNGQFAMTHPEMELYNAANKNVGNPSLQPVYRSTEKLKQSFLDTKGIQRLQE-- 177

Query: 184 VLPEWIEKD--------LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
            L  W  K         LL+++   S AEA   IH P   ++ +    A  RL ++EL  
Sbjct: 178 GLVAWASKKMEENLPSYLLKEQHLISKAEAITHIHFPSSVEELK---AAERRLKFEELFF 234

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRN--------IPFSPTKSQESAIKDILQD 287
            Q+ LL  +     +       +G +  K+  N        +PF  T +Q+  IK+I  D
Sbjct: 235 IQLKLLKNKLLQTHKF------KGHVFDKVGSNFNAFYQEHLPFPLTNAQKRVIKEIRHD 288

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
                +M R+LQGDVGSGKT+VAL+ M  AV+ G QA +MAP  ILAQQH+  +     +
Sbjct: 289 THTGAQMNRLLQGDVGSGKTVVALMTMLLAVDNGCQACMMAPTEILAQQHFNGLISLIGD 348

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + +++++G+ P+  R+   E +  G   I++GTHAL +D++Q+  L LV++DEQHRFG
Sbjct: 349 LPVSIKLLSGSTPKKERKILHENLLDGSLDILVGTHALIEDTVQFKNLGLVVIDEQHRFG 408

Query: 408 VQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           V+QR KL +K    PH+L+MTATPIPRTL +T  GD+D+S I E PAGRKPIKT+ +  +
Sbjct: 409 VEQRAKLWRKNQIPPHMLVMTATPIPRTLAMTLYGDLDVSVIDELPAGRKPIKTLHLFES 468

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHG 523
               +   ++  +++G++ Y + P I+E ++ +   +     +L   F      I+I+HG
Sbjct: 469 SRLRMFGFMRDEIAKGRQVYVVYPLIKESEKLDLMHLEAGIENLAREFPLPRYKISIVHG 528

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M   DK+  M  F  G  ++++ATTVIEVG++V +A+++IIENAE FGL+QLHQLRGRV
Sbjct: 529 KMPAKDKDFEMQRFVKGETQIMVATTVIEVGVNVPNATVMIIENAERFGLSQLHQLRGRV 588

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG E S CIL+    LS     RLS +  T DGF IAE DLK R  G+I G +QSG+  
Sbjct: 589 GRGGEQSFCILMSSNKLSTEGKLRLSTMVKTNDGFEIAETDLKLRGPGDIAGTQQSGILD 648

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
             +A       LL+ AR    +I  QDP L   + + +R
Sbjct: 649 LKLADLSTDQVLLQDARNLVINIFKQDPKLEDPKNRLLR 687


>gi|117928787|ref|YP_873338.1| ATP-dependent DNA helicase RecG [Acidothermus cellulolyticus 11B]
 gi|117649250|gb|ABK53352.1| ATP-dependent DNA helicase RecG [Acidothermus cellulolyticus 11B]
          Length = 741

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 229/689 (33%), Positives = 354/689 (51%), Gaps = 61/689 (8%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEI 101
           DLL Y P  +  R     + E+ ++   TI   I      +L   RR Y +++ DG  ++
Sbjct: 33  DLLTYFPRRYHQRGELTPLRELRDDEHATIFAEILSVRERRLSGHRRMYDVVVTDGDEKL 92

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN-SQDVNFP-LIEAV 159
            L FF      L+ +   GR    +GK+ + K    +VHP   F +   D  F   I  V
Sbjct: 93  KLRFFNLTNWQLEKLAVGGRGF-FSGKVTRFKGERQIVHPEMEFVDPDTDPAFASAIIPV 151

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           Y     +S  +  + +   L  L +  + +  D+ ++ +  ++  A   +H P    D  
Sbjct: 152 YPAAEHISSGMIWRAVRHVLDTLDISEDPLPADIRRRHNLVTLRRALENMHRP---ADLA 208

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQE 278
             +  R R  + E    Q+AL L R+  + E  +P     G +       +PF+ T+ Q 
Sbjct: 209 DVATGRRRFTFQEAFVFQLALGLRRRMMQAEQAVPRPRRRGGLLDAFDAALPFALTEGQR 268

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A  DI  D++  + M R+L G+VGSGKTLVAL AM   V+AGGQA ++AP  +LA QHY
Sbjct: 269 RAGADIEADLAAPHPMHRLLHGEVGSGKTLVALRAMLTVVDAGGQAALLAPTEVLAMQHY 328

Query: 339 EFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           + I +               T   V +ITG++    RR+ L+ IA G+  I++GTHAL  
Sbjct: 329 QTITRLLGSLALAGQLGGAETATRVALITGSVTGGARRELLDAIAAGEVGIVVGTHALLY 388

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQK---ATAPHVLLMTATPIPRTLVLTSLGDID 444
           D++++  L LV+VDEQHRFGV+QR  L  K    T PHVL+MTATPIPRT+ LT  GD+D
Sbjct: 389 DTVRFADLGLVVVDEQHRFGVEQRAALRTKGSDGTVPHVLVMTATPIPRTVALTVYGDLD 448

Query: 445 ISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
           IS + E+P+G   + T ++P++      + V  R++   + G++ Y ICP+I   ++   
Sbjct: 449 ISVLRERPSGDPKVDTFVVPLSEKPAWAERVWARVREEAAAGRQVYVICPRISTGEDDTG 508

Query: 498 -------------SNFR----------SVVERFNSLHEHFTS---------SIAIIHGRM 525
                         N R            V R  ++ E   +          I  +HGRM
Sbjct: 509 DESDDIVVPAEPADNGRLPGLSGAGRPPRVRRAAAVDEVAATLRDGPLRGLRIGTLHGRM 568

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
               K++V+  F  G   +L+ATTV+EVG+DV +AS+++I +A+ FG++QLHQLRGR+GR
Sbjct: 569 DAAAKDAVLADFSAGRLDVLVATTVVEVGVDVPNASMMVILDADRFGVSQLHQLRGRIGR 628

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
             + + C+L+   P    +Y RL+ +  T DGF +AE DL+QR EG +  + Q G   F 
Sbjct: 629 AGQRAVCLLVTEAPADTAAYARLTGVAATCDGFRLAELDLEQRGEGTVRDVVQHGRSDFR 688

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLT 674
                 H  ++E AR +A+ ++  DP+LT
Sbjct: 689 FLSLLRHRDVIETARAEAEQLIAADPELT 717


>gi|70726688|ref|YP_253602.1| ATP-dependent DNA helicase RecG [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447412|dbj|BAE04996.1| ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435]
          Length = 683

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 222/666 (33%), Positives = 366/666 (54%), Gaps = 31/666 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL + +G+G K    L ++    N N     DL+ Y P+ + D      ++   ++  VT
Sbjct: 12  PLQSIKGLGPKRIALLQEL----NINTVE--DLVLYLPTRYEDNTV-VDLNMAEDQSTVT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +    +     R   K+ ++     I +   F+ +  + K +   G  +TV GK  
Sbjct: 65  IVGEVYSMPTVAFFGRNKSKLTVHLMVDNIAVKCIFFNQPYLKKKIELHG-TVTVKGKWN 123

Query: 131 KLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           + K  I   + + +F N  SQD +   +E VY +  G+     + +I + L  + +  EW
Sbjct: 124 RAKQEI---NGNRMFFNEQSQDTSEIKLEPVYRIKEGIKQKQMRDMIYQTLDDVTI-HEW 179

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQF 247
           + ++L QK    S+ +  + +H P+  +D      AR   A+ EL   ++ +  L R + 
Sbjct: 180 LTEELKQKYKLESLEDTLHALHRPKDRQDL---LRARRTYAFTELFMFELRMQWLNRLEK 236

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +  I IN + +  +  +  +PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT
Sbjct: 237 SSDEAIEINYDIQKVKDFIETLPFELTDAQKKSVNEIFRDLKAPIRMHRLLQGDVGSGKT 296

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQH----YEFIKKYTQNTQIIVEIITGNMPQAH 363
           +VA I M A   AG Q+ +M P  ILA+QH     E   +Y       V ++TG++    
Sbjct: 297 VVAAICMYALKTAGYQSALMVPTEILAEQHANSLTELFGEYMN-----VALLTGSVKGKK 351

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           R+  LE++ +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +V
Sbjct: 352 RKVLLEQLENGTIDCLIGTHALIQDDVTFQNVGLVITDEQHRFGVNQRQLLREKGAMTNV 411

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL ++  G++D+S I + P GRKPI T      + ++V+ ++   L +G+
Sbjct: 412 LFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITNWAKHEQYEQVLSQMTSELKKGR 471

Query: 484 KAYWICPQIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IE  +   + ++VVE + SL  H+    + ++HG+M   +K+ VM  F    
Sbjct: 472 QAYVICPLIESSEHLEDVQNVVELYESLKLHYGEKKVGLLHGKMPAEEKDEVMTRFSQHE 531

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  +
Sbjct: 532 IDILVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-T 590

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R++++  T DGF ++E DL+ R  G+  G+KQSG+P F++A       +LE+AR 
Sbjct: 591 ETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFMVANIVEDYRMLEVARD 650

Query: 662 DAKHIL 667
           +   ++
Sbjct: 651 EVAELI 656


>gi|228474943|ref|ZP_04059671.1| ATP-dependent DNA helicase RecG [Staphylococcus hominis SK119]
 gi|228270928|gb|EEK12316.1| ATP-dependent DNA helicase RecG [Staphylococcus hominis SK119]
          Length = 683

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 227/688 (32%), Positives = 378/688 (54%), Gaps = 22/688 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL + +G+G K    L ++      N     DL+ Y P+ + D      ++   ++  VT
Sbjct: 12  PLQSIKGLGPKRIALLHEL------NIHTIEDLVLYLPTRYEDNTV-VDLNLAEDQSTVT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I    +     R   K+ ++     I +   +     LK      + +T+ GK  +
Sbjct: 65  VAGEIYSVPTVAFFGRNKSKLTVHLMIDNIAVKCVFFNQPYLKKKIELNQTVTIKGKWNR 124

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLI--EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            K  I   + + IF N    +   +  E VY L  G+     + +I ++L+ + +  EWI
Sbjct: 125 AKQEI---NGNRIFFNDTHTSTEEVRLEPVYRLKEGIKQKQMRDMIHQSLNDVTI-HEWI 180

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFK 248
            ++L Q+     +      +H P   KD +    AR   A+ EL   ++ +  L R +  
Sbjct: 181 TEELRQRYKLELLDYTIKTLHLP---KDKQALMRARRTYAFTELFMFELRMQWLNRLEKA 237

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +  I IN +    +  ++++PF  T +Q+S++ +I +D+    RM R+LQGDVGSGKT+
Sbjct: 238 SDEAIEINYDINKVKSFIQSLPFELTDAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTV 297

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA I M A   AG Q+ +M P  ILA+QH   + +   +  + V ++TG++    RR  L
Sbjct: 298 VAAICMYALKTAGYQSALMVPTEILAEQHANSLTELFGD-HMNVALLTGSVKGKKRRVLL 356

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E++ +G    +IGTHAL QD +++  + LVI DEQHRFGV QR  L +K    +VL MTA
Sbjct: 357 EQLENGTIDCLIGTHALIQDDVKFKNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTA 416

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY I
Sbjct: 417 TPIPRTLAISVFGEMDVSSIKQLPKGRKPIITHWAKHEQYDQVLAQMTSELKKGRQAYVI 476

Query: 489 CPQIEEKKE-SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IE  +   + ++VVE F SL E +  + + ++HG+MS  +K+ VM  F N    +L+
Sbjct: 477 CPLIESSEHLEDVQNVVELFESLQEFYGKTHVGLLHGKMSADEKDDVMARFSNHDIDILV 536

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    
Sbjct: 537 STTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIE 595

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R++++  T DGF ++E DL+ R  G+  G+KQSG+P F++A       +LE+AR +A  +
Sbjct: 596 RMTIMTQTTDGFELSEYDLEMRGPGDFFGVKQSGLPDFMVANIVEDYRMLEVARDEAAEL 655

Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           + Q  +  + + + +R  +  +  N +F
Sbjct: 656 I-QSGEFFTEKYERLRAFINDHLLNMSF 682


>gi|118587509|ref|ZP_01544933.1| ATP-dependent DNA helicase RecG [Oenococcus oeni ATCC BAA-1163]
 gi|118431960|gb|EAV38702.1| ATP-dependent DNA helicase RecG [Oenococcus oeni ATCC BAA-1163]
          Length = 676

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 236/697 (33%), Positives = 387/697 (55%), Gaps = 38/697 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           LF  ++   GVG+K +  L +  I+N          DLL Y+P  + D   R   S+  +
Sbjct: 3   LFDSITELSGVGQKRAEILKQLGILNIE--------DLLTYYPFRYDDLESRLP-SQTDD 53

Query: 67  ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + VT  G +S     S F  +K R  +++L+  G   I++ FF +    LK     G++
Sbjct: 54  GQKVTFKGMVSSQPTISRFGYKKSRIAFRLLI--GHDNISVSFFNQP--WLKEQIEIGKE 109

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           + + G    +   +       I H   D     + A+Y     +     +++I  A ++ 
Sbjct: 110 MAIFGTYDAVHEAL---KGQRIIHAENDS----LAAIYPSNQAIHQKTIQQLIENAYAKY 162

Query: 183 P-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              + + I + L+      S  +  + +H P  A++ +    AR   A++E    Q+ L 
Sbjct: 163 ADQINDIIPRRLMLAYRLLSRKKQIHDMHFPDSAENAKL---ARRSAAFEEFFIFQMRLQ 219

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           LMR    K  G  I    +I    +  +P+S T +Q+  I++IL D+ +   M R+LQGD
Sbjct: 220 LMRISAGKNRGREIEYNSEILNDFIAKLPYSLTDAQKKVIQEILLDLKRPIHMNRLLQGD 279

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNM 359
           VGSGKT+VA IAM A   AG QA IM P  ILAQQH   +    Q+    + +E++T  +
Sbjct: 280 VGSGKTVVAAIAMLACYSAGLQAAIMVPTEILAQQHAINLSNLYQSAGLNLRIELLTSGL 339

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A RR+ L  +  G+  I++GTHAL Q  + ++ L L ++DEQHRFGV+QR +L ++  
Sbjct: 340 KAAARRQILADLESGEIDIVVGTHALIQADVHFHNLGLAVIDEQHRFGVKQRARLREQGQ 399

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P +L MTATPIPRTL +T+ G++D+S I + P GR+PI T  +  N+ D V + +K  L
Sbjct: 400 NPDILAMTATPIPRTLAITAYGEMDVSTIDQLPNGRRPIITKWVKSNQFDNVFDWVKTQL 459

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           + G + Y + P IEE +  + ++ V  ++ L E      I ++HGR+++ +K+ V++ F 
Sbjct: 460 AAGAQVYVVTPLIEESETLDVQNAVLIYDRLKEELKPYRIGLLHGRLTNDEKQQVINDFS 519

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               ++L+ TTVIEVG+D+ +A+I++I +A+ FG+AQLHQLRGRVGRG++ S  IL+  P
Sbjct: 520 TNRVQVLVTTTVIEVGVDIKNATIMVILDADRFGIAQLHQLRGRVGRGKKQSYAILVSDP 579

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLE 657
             ++    R+  + +T DGF +AE+DLK R  G+++GIKQ+GMP+F +  P +HD  ++E
Sbjct: 580 K-TQYGIDRMEAIVSTNDGFALAEKDLKLRGPGDVIGIKQAGMPEFNVGDP-IHDLKMME 637

Query: 658 IARKDAKHILTQ-DPDLTSVRGQSIRIL-LYLYQYNE 692
            A++ A  I +Q + D      + ++ L L +Y+Y +
Sbjct: 638 TAQQSAIEITSQSNWDADKENAELVKYLSLTMYRYKD 674


>gi|224535823|ref|ZP_03676362.1| hypothetical protein BACCELL_00687 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522546|gb|EEF91651.1| hypothetical protein BACCELL_00687 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 698

 Score =  363 bits (931), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 241/676 (35%), Positives = 378/676 (55%), Gaps = 31/676 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +N  + +     DLL+Y P  ++DR     I EI      + + G I
Sbjct: 14  GVGPQRASVLNKELNIYSLH-----DLLYYFPYKYVDRSRIYYIHEIDGTMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F +  + L   +   ++  V GK      RI
Sbjct: 69  LGFETIGEGRQRRLIAHFSDGTGIVDLVWF-QGIKFLVGKYKVHQEYIVFGKPSVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRL-PVLPEWIE 190
            + HP     +   ++   ++  Y+       + L+    +K++   + +L   LPE + 
Sbjct: 128 NIAHPDIDNASELKLSTMGLQPYYNTTEKMKRSSLNSHAIEKMMSAVVQQLREPLPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             +L +     + EA   IH P      E    A+ RL ++EL   Q+ +L   K  +++
Sbjct: 188 PAILTEHHLMPLTEALMNIHFPANP---ELLRKAQYRLKFEELFYVQLNILRYAKDRQRK 244

Query: 251 I-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
             G      G+I      +N+PF  T +Q+  +K+I +D+    +M R+LQGDVGSGKTL
Sbjct: 245 YRGYVFETVGEIFNTFYAKNLPFELTGAQKRVLKEIRRDVGSGKQMNRLLQGDVGSGKTL 304

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL++M  A++ G QA +MAP  ILA QH+E I++      I VE++TG++    R   L
Sbjct: 305 VALMSMLIALDNGYQACMMAPTEILANQHFETIRELLYGMDIRVELLTGSVKGKKREAIL 364

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427
             +  G   I+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L T+ A  PHVL+MT
Sbjct: 365 TGLLTGDVRILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRARLWTKNAQPPHVLVMT 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSEGK 483
           ATPIPRTL +T  GD+D+S I E P GRKPI T    I++ D     + + +   ++EG+
Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIVT----IHKYDAHRVSLYQSVHRQIAEGR 480

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ M  F +G  
Sbjct: 481 QVYIVYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKAAEKDAQMQLFVSGEA 540

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+    L +
Sbjct: 541 QIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVTGYKLVE 600

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARK 661
            +  RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R 
Sbjct: 601 ETRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVRN 660

Query: 662 DAKHILTQDPDLTSVR 677
            A+ ++  DP  T +R
Sbjct: 661 VAEEVVDADP--TGIR 674


>gi|227878872|ref|ZP_03996777.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01]
 gi|256849792|ref|ZP_05555223.1| ATP-dependent DNA [Lactobacillus crispatus MV-1A-US]
 gi|262046963|ref|ZP_06019923.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus MV-3A-US]
 gi|227861506|gb|EEJ69120.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01]
 gi|256713281|gb|EEU28271.1| ATP-dependent DNA [Lactobacillus crispatus MV-1A-US]
 gi|260572945|gb|EEX29505.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus MV-3A-US]
          Length = 678

 Score =  363 bits (931), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 223/686 (32%), Positives = 379/686 (55%), Gaps = 28/686 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +  L      G+       DLLFY P  + +    P + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTTAAL------GSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56

Query: 67  ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + V + G ++     S F  +K R  +K+ ++    ++ ++ F+ +   LKN    G++
Sbjct: 57  GQKVMLKGIVATEAFVSRFGYKKTRLSFKMRIDH---DVIMVNFFNQP-WLKNKIEIGQE 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           + + GK    +  +      ++     D    P+      +     VDL    I + + +
Sbjct: 113 VAIYGKYNVARQSLTAFK--FVAAKENDSGMAPIYPVNRHVKQKKLVDLINVAIDDFIDQ 170

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           +  ++PE + ++    K    I +    +H+P+ + + E    A+    + E    ++ L
Sbjct: 171 VQDIVPEKLRQEYRLLKDQVIIEK----MHHPKNSHEAEL---AKRSAIFREFFIFELQL 223

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+ +   K++G     +     ++ +++PF  +  Q+  + +I  DM    +M R+LQG
Sbjct: 224 ALLTRNDGKQMGYAKKYDLTEIAQLTKSLPFELSDDQKHVVNEIFADMHSDGQMRRLLQG 283

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   + V ++TGN  
Sbjct: 284 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 343

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+    +  G  +++IGTHAL QDS+ + KL LVI+DEQHRFGV QR  L  K   
Sbjct: 344 TLERREIYRELTDGTINVVIGTHALIQDSVIFKKLGLVIIDEQHRFGVGQRQALINKGDQ 403

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P +L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +     +++ EV  +++  L+
Sbjct: 404 PDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQLN 463

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           +G + Y + P I E +  + ++  E    L   F +  + ++HG+M    K+ +M +F  
Sbjct: 464 QGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFAA 523

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ L  P 
Sbjct: 524 GEIDILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK 583

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            + +   R+ ++ +T DGF +AEEDLK R EG++ G  QSG+P+F +     +   L +A
Sbjct: 584 -TDSGKARMKIIASTNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYDTLVVA 642

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685
           +K+A+ ++  DPDL+    ++++ +L
Sbjct: 643 QKEARALVAADPDLSDPGHKALKQVL 668


>gi|257866567|ref|ZP_05646220.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC30]
 gi|257872917|ref|ZP_05652570.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC10]
 gi|257800525|gb|EEV29553.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC30]
 gi|257807081|gb|EEV35903.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC10]
          Length = 676

 Score =  363 bits (931), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 231/672 (34%), Positives = 386/672 (57%), Gaps = 33/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+  +GVG+K +  L+ +       ET   DLL Y+P  + D   R +++EI ++ 
Sbjct: 2   LNQPLTVLKGVGEKRAQDLASL-----GIET-IEDLLKYYPFRYEDIQER-QLAEIQDQE 54

Query: 69  IVTITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
            VTI G +      + F  +K R    ++ D   ++  + F+ +   LK+      +I V
Sbjct: 55  KVTIKGIVVSPPVVNRFGYKKSRLQFRMMQDH--DVFNVSFFNQP-YLKDKVEVSEEIAV 111

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183
            GK    +  +  +    I  +    +F P+     ++   + ++L K+  ++   ++  
Sbjct: 112 YGKWDAKRKGLTGIK---ILGSKSAEDFAPIYHVNKAVRQSVLIELIKQAFLDFGDQITE 168

Query: 184 VLP-EWIEK-DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +LP   IEK  LL +KS      A   +H P   KD + +  A+ R+ ++E    Q+ + 
Sbjct: 169 ILPLSLIEKYRLLDRKS------AMFAMHFP---KDPQESHQAKRRVIFEEFFLFQMQIQ 219

Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++K  K E  G+ I+ + +  ++  R +PF  T +Q+    +I  D+     M R+LQG
Sbjct: 220 GLKKSEKAEKNGLAIDYDVQRLKEFTRKLPFELTNAQKRVTNEICHDLKSPQHMQRLLQG 279

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH E + +     ++   ++TG+  
Sbjct: 280 DVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQHLESLNQLFDPLEVTTALLTGSTK 339

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR  LE++A G+  II+GTHAL Q+ + +  L LVI DEQHRFGV QR  L +K   
Sbjct: 340 PKERRVILEQLAAGEIDIIVGTHALIQEGVDFAHLGLVITDEQHRFGVNQRKVLREKGYL 399

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL MTATPIPRTL +T+ G++D+S I E PAGR P++T  +   + + ++E  +  L+
Sbjct: 400 PDVLFMTATPIPRTLAITAYGEMDVSVIDEMPAGRIPVETRWVRPPQFESILEWAQKELA 459

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFK 538
           +G + Y ICP IEE +  + ++  E +  L  +F  T  + ++HG+M + +K+S+M++FK
Sbjct: 460 QGHQMYVICPLIEESEMLDVKNATEIYEQLQSYFSPTYQVGMLHGKMKNQEKDSIMEAFK 519

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P
Sbjct: 520 ENQLQILVSTTVIEVGVNVPNATVMLIIDADRFGLAQLHQLRGRVGRGADPSYCILIANP 579

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F  A       +LE+
Sbjct: 580 K-NETGVERMKIMTETTNGFVVSEKDLQLRGPGEVFGNRQSGLPEFAAADLVADAHILEV 638

Query: 659 ARKDAKHILTQD 670
           A+ +A  +  ++
Sbjct: 639 AQVEAAQLWQKN 650


>gi|218128542|ref|ZP_03457346.1| hypothetical protein BACEGG_00112 [Bacteroides eggerthii DSM 20697]
 gi|217989266|gb|EEC55580.1| hypothetical protein BACEGG_00112 [Bacteroides eggerthii DSM 20697]
          Length = 698

 Score =  363 bits (931), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 236/673 (35%), Positives = 371/673 (55%), Gaps = 33/673 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   +     F DLL+Y P  ++DR     I EI      + + G I
Sbjct: 14  GVGPQRASVLNKELGIFS-----FHDLLYYFPYKYVDRSRIYYIQEIDGTMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F +  + L   +   ++  V GK      RI
Sbjct: 69  LGFETAGEGRQRRLIAHFSDGTGVVDLIWF-QGIKYLIGKYKVHQEYIVFGKPSVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP     +   ++   ++  Y+    +         +E + +  V      LPE + 
Sbjct: 128 NIAHPDIDPASELKLSAMGLQPYYNTTEKMKRSSLNSHAIEKMMKNIVRQLDEPLPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             LL +     + EA   IH P      +    A  RL ++EL   Q+ +L   K  +++
Sbjct: 188 PALLAEHHLMPLTEALMNIHFPVSP---DVLRKAEYRLKFEELFYVQLNILRYAKDRQRK 244

Query: 251 IGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
                   G + +K+         RN+PF  T +Q+  +K+I +D+    +M R+LQGDV
Sbjct: 245 ------YRGYVFEKVGDTFNGFYSRNLPFELTNAQKRVLKEIRRDLGSGRQMNRLLQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVAL++M  A++ G QA +MAP  ILA QHY+ I++      + VE++TG++   
Sbjct: 299 GSGKTLVALMSMLMALDNGYQACMMAPTEILANQHYDTIRELLYGMDVRVELLTGSIKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-AP 421
            R   L  +  G   I+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L  K+T  P
Sbjct: 359 RREAILSGLLTGDVQILIGTHAVIEDTVNFASLGLVVIDEQHRFGVAQRARLWAKSTQPP 418

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H+L+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    +    +   ++  + E
Sbjct: 419 HILVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDSHRVSLYRSVRKQIEE 478

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNG 540
           G++ Y + P I+E ++ + +++ E F  + E F    +  +HG+M   +K++ M  F +G
Sbjct: 479 GRQVYIVYPLIKESEKIDLKNLEEGFLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFVSG 538

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+    L
Sbjct: 539 EAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVTGYKL 598

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIA 659
           ++++  RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  
Sbjct: 599 AEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYV 658

Query: 660 RKDAKHILTQDPD 672
           R  A+ I+ +DP+
Sbjct: 659 RGVAEAIVDKDPN 671


>gi|282879459|ref|ZP_06288196.1| ATP-dependent DNA helicase RecG [Prevotella buccalis ATCC 35310]
 gi|281298431|gb|EFA90863.1| ATP-dependent DNA helicase RecG [Prevotella buccalis ATCC 35310]
          Length = 700

 Score =  363 bits (931), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 240/674 (35%), Positives = 373/674 (55%), Gaps = 35/674 (5%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE-RIVTITGYI 76
           GVG K    L K      AN   + DLL Y+P  ++DR    +I ++  +   V + G I
Sbjct: 14  GVGPKRKAILEK-----EANIATWGDLLEYYPYKYVDRSRIYRIIDLQGDLPFVQLKGKI 68

Query: 77  SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
                F +  R+   +   +DGTG   L++F     + KN +    +  V G+      R
Sbjct: 69  LSFEEFTMSPRKKRVVAHFSDGTGIADLVWFQGTQYVYKN-YKVNEEYIVFGRPTIYGGR 127

Query: 136 IIMVHPHYIFHNSQDVNF------PLIEAVYSLP-TGL---SVDLFKKIIVEALSRLPV- 184
               HP      + D+        P   A   +  +GL   +++   K +V+ L    + 
Sbjct: 128 YQFAHPD--IDKAADIQLSEMGMQPYYMATERMKKSGLQSHAIEKLTKTLVDKLGENDLS 185

Query: 185 --LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             LP +I   L       S AEA   IH P+   D +    A+ RL ++EL   Q+ +L 
Sbjct: 186 ETLPPFITGPL----HLISRAEAMAKIHYPKSLDDVQ---RAQLRLKFEELFYVQLNILR 238

Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
                K++  G   N  G       +N +PF  T +Q+  + +I +DM+   +M R++QG
Sbjct: 239 YANDRKRKYQGYVFNHVGPQFHHFYKNNLPFELTNAQKRVMHEIRKDMTTGRQMNRLVQG 298

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVAL++M  A++ G QA +MAP  ILA+QH+  IKK+     + VE++TG + 
Sbjct: 299 DVGSGKTLVALMSMLIAIDNGYQACMMAPTEILAEQHFATIKKFLGGMDVRVELLTGMVK 358

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT- 419
              R +    +  G+ HI++GTHA+ +D++++  L + +VDEQHRFGV QR KL  K+  
Sbjct: 359 GKKRNEVFHGLLTGEVHILVGTHAVIEDNVRFSHLGMAVVDEQHRFGVAQRAKLWGKSER 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N++  + + ++  +
Sbjct: 419 PPHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHQYDNQMTSLYQGIRKQI 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            +G++ Y + P I E ++ + +++   F SL   F    ++ +HG+M   +K++ M  F 
Sbjct: 479 QQGRQVYIVFPLITESEKIDLKNLEAGFESLCTIFPDFKLSKVHGKMKPKEKDAEMQKFS 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++L+ATTVIEVG+DV +AS+++I +A  FGL+QLHQLRGRVGRG E S CIL+   
Sbjct: 539 RGETQILVATTVIEVGVDVPNASVMVILDAHRFGLSQLHQLRGRVGRGAEQSYCILVTSH 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLE 657
            LSK +  R+ ++  T DGF IAE DLK R  G++ G +QSG+   L IA       +++
Sbjct: 599 KLSKETRRRIDIMCETCDGFQIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQIIQ 658

Query: 658 IARKDAKHILTQDP 671
           +AR +A+ I+  DP
Sbjct: 659 LARDEAQKIIEADP 672


>gi|257453021|ref|ZP_05618320.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 3_1_5R]
 gi|317059561|ref|ZP_07924046.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 3_1_5R]
 gi|313685237|gb|EFS22072.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 3_1_5R]
          Length = 679

 Score =  363 bits (931), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 224/604 (37%), Positives = 353/604 (58%), Gaps = 12/604 (1%)

Query: 43  DLLFYHPSSFIDRHYRPKISEIS-EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           DLL+Y P ++ +R    KI+E+  EE  V     +  +S+     R+  K    DG+G +
Sbjct: 30  DLLYYFPRAYDNRSNIKKIAELRMEEYAVIHAKLLHVYSAPTKLGRKMTKATATDGSGFL 89

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            +++F      L+       +    G +K+      M +P +     Q +   ++  +YS
Sbjct: 90  EIVWF--GMPYLQKSLKLQEEYIFVGTVKRAMGAFQMTNPEFKLSKGQKMRGEIL-PIYS 146

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
               LS +  +K + E L    +L E I K++ QK +     +A + IH P   K  E  
Sbjct: 147 SHKNLSQNRLRKYLKEILFENSLLSENIPKEICQKYNILGRNQALSEIHFPSSEKILE-- 204

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK--IAQKILRNIPFSPTKSQES 279
             A+ R A +ELL  ++ +L  R           ++EGK  + ++ L ++PF  TK+Q+ 
Sbjct: 205 -EAKRRFAIEELLIIEMGILKNRFLTDALTQAFYHLEGKKTLVKQYLSSLPFQLTKAQKK 263

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            I +I +D+ Q   + R++QGDVGSGKT+VA++ +   +E G Q  +MAP  ILA QHY 
Sbjct: 264 VITEIYKDLEQGRIVNRLVQGDVGSGKTMVAMVLLLYMIENGYQGALMAPTEILAIQHYL 323

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            I    Q   + VE++TG++    RRK L+ +  G   ++IGTHAL ++ +++++L  ++
Sbjct: 324 GIYSKMQELGLRVELLTGSIRGKKRRKLLDDLKEGNIDLLIGTHALLEEEVRFHQLGFIV 383

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DEQHRFGV QR KL +K    ++L+MTATPIPR+L L+  GD+D+S + E P GR PIK
Sbjct: 384 IDEQHRFGVLQRKKLREKGILTNLLVMTATPIPRSLALSIYGDLDVSILDELPPGRSPIK 443

Query: 460 TVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
           T  I     ++++   ++  LS+GK+AY++ P IEE ++    S++E    + E   +  
Sbjct: 444 TKWISTKEDMEKMYAFIRKQLSQGKQAYFVAPLIEESEKLLLSSILEVEEEVKEKLPNYK 503

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA++HGRM +I+K+ +M  FK     +L++TTVIEVGIDV +A I+ I NAE FGL+ LH
Sbjct: 504 IALLHGRMKNIEKDEIMQRFKQREIDILVSTTVIEVGIDVPNAVIMTILNAERFGLSALH 563

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG++ S C L+     ++ S  RL +++ T+DGF+IAEEDLK R  GEI G++
Sbjct: 564 QLRGRVGRGKDASFCFLISKTQ-NETSKQRLEIMEATQDGFIIAEEDLKLRNAGEIFGLR 622

Query: 638 QSGM 641
           QSG+
Sbjct: 623 QSGL 626


>gi|323705491|ref|ZP_08117066.1| ATP-dependent DNA helicase RecG [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535393|gb|EGB25169.1| ATP-dependent DNA helicase RecG [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 682

 Score =  363 bits (931), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 230/669 (34%), Positives = 365/669 (54%), Gaps = 17/669 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG K +L L +I       ET   D L Y+P  + DR     I  +    
Sbjct: 3   LSKPIQYVKGVGPKRALLLKRI-----GIET-VKDALEYYPREYEDREKIIPIDMLKIGE 56

Query: 69  IVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             T   YI+  +  ++++     KI + DG+G + L+++      +KN F  G +  + G
Sbjct: 57  KQTFKAYIAGKAREYRIKGLIITKIPVKDGSGALELVWY--NQPYVKNNFKLGEEYIING 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLP 186
           +I     ++ + +P     +  ++N   I  +Y L  GLS  + + II   L   +  + 
Sbjct: 115 RISYKYGQVYVENPTMDKSDVLNLNAGRIVPIYKLTDGLSQKILRNIIYSLLKEYINEIE 174

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E  ++D L + +   I +A   IH P      E    A+ RL + E    Q+ L L++ +
Sbjct: 175 EIFDEDFLTEYNLLGIRKAIKNIHFPESP---EMLERAKYRLIFQEFFILQLGLNLIKNR 231

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           +  +    I  +     + L N+ F+ TK+Q+ A+ +IL DM     M R+LQGDVGSGK
Sbjct: 232 YDIDKS-GIKFKHVDLSEFLNNLKFTFTKAQDKALNEILNDMYSGKVMNRLLQGDVGSGK 290

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T++A  AM  AV+ G QA I+ P  ILA+QHY  +K+      +  E++TG++    +  
Sbjct: 291 TIIAAAAMYVAVKNGYQASILTPTEILAKQHYLSLKELYDKLGVKTELLTGSISNKRKNL 350

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            +E++ +G+  +++GTH+L +D++Q+  L L I DEQHRFGV+QR     K    +VL+M
Sbjct: 351 IIEKVKNGEIDVLVGTHSLIEDNVQFKNLGLAITDEQHRFGVRQRAMFKNKGNQTNVLVM 410

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L   GD+DIS I E P GRK ++T  I     +   + +   + +G +AY
Sbjct: 411 TATPIPRTLALMLYGDLDISIIDELPPGRKKVETYAISGALRERAYKFVVNEIKKGHQAY 470

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP IE+ +    +S    +  +++       + ++HG M+  DK+ VM  F +G   +
Sbjct: 471 IVCPLIEDSQTIYAKSAEVVYEEIYKGVFKDFRVGLVHGGMNSNDKDKVMSEFVDGEIDI 530

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG++V +A++I+IENAE FGLAQLHQLRGRVGR    S CIL+ +   S   
Sbjct: 531 LVSTTVIEVGVNVPNATVIVIENAERFGLAQLHQLRGRVGRSSHQSYCILIAY-SYSDVV 589

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL V+  T DGF IAE+DL+ R  GE  G+KQ G+P+  +A       +L++A+K  +
Sbjct: 590 KKRLKVMTETNDGFKIAEKDLEIRGPGEFFGVKQHGLPELKLANLFDDIEILKLAQKAVE 649

Query: 665 HILTQDPDL 673
             ++ D + 
Sbjct: 650 RFISYDGNF 658


>gi|282858677|ref|ZP_06267833.1| ATP-dependent DNA helicase RecG [Prevotella bivia JCVIHMP010]
 gi|282588530|gb|EFB93679.1| ATP-dependent DNA helicase RecG [Prevotella bivia JCVIHMP010]
          Length = 699

 Score =  363 bits (931), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 246/671 (36%), Positives = 377/671 (56%), Gaps = 30/671 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG +    LSK +         + DLL Y+P  +IDR     ISE+S++   V I G I
Sbjct: 14  GVGPRRKDILSKELGINT-----YRDLLEYYPYKYIDRTKVYLISELSQDMPFVQIKGKI 68

Query: 77  SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
                + + +R+   I   +DG G   L++F     + KN +  G++  V GK      R
Sbjct: 69  LSFEEYDMGRRKKRIIAHFSDGHGVCDLVWFNGTQYVYKN-YQVGKEYVVFGKPGFYNGR 127

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRLPV-----L 185
               HP     +   +N   ++  Y          LS    +K+    +S+L       L
Sbjct: 128 FQFTHPDIDDASQLQLNDMGMQPFYVTTEKMKNASLSSRAMEKLTKVLISKLTTPLEETL 187

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMR 244
           P +I   L       S  EAF  IH P+  +D   T  AR RL ++EL   Q+ +L    
Sbjct: 188 PPFITTHL----HLISRDEAFRKIHYPKSVED---TQRARMRLKFEELFYVQLNILRYAS 240

Query: 245 KQFKKEIGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
              +K  G      G+        N+PF+ T +Q+  +K+I  DM    +M R+LQGDVG
Sbjct: 241 DHHRKYRGYAFKRIGEQFNWFYHHNLPFALTNAQKRVMKEIRADMGSGRQMNRLLQGDVG 300

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVAL++M   V+ G QA ++AP  ILA+QH + I+++     + VE++TG +    
Sbjct: 301 SGKTLVALMSMLIGVDNGFQACLVAPTEILAEQHLQTIREFLHGMNLRVELLTGIVKGKK 360

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPH 422
           R+  LE +  G  HI++GTHA+ ++++ + KL + ++DEQHRFGV QR +L T+    PH
Sbjct: 361 RKAILEGLVDGTIHILVGTHAILEETVAFQKLGVAVIDEQHRFGVAQRARLWTKSEQPPH 420

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    ++   + + ++  +  G
Sbjct: 421 VLVMTATPIPRTLAMTIYGDLDVSIIDELPPGRKPIATIHKYDDQTTSLYQGIRQQILRG 480

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++ Y + P I+E ++S+ +++ E + +L E F    ++ IHG+M D +KE  M  F  G 
Sbjct: 481 RQVYIVFPLIKESEKSDLKNLEEGYITLKEAFPEFHLSKIHGKMKDKEKEEEMQKFVLGQ 540

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ +  L+
Sbjct: 541 TQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGAQQSYCILVTNHKLT 600

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIAR 660
           K +  R+ V+  T DGF IAE DLK R  G++ G +QSG+   L IA       L+++AR
Sbjct: 601 KETKKRIDVICGTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLVQMAR 660

Query: 661 KDAKHILTQDP 671
            +A++I+  DP
Sbjct: 661 DEARNIIETDP 671


>gi|256379970|ref|YP_003103630.1| ATP-dependent DNA helicase RecG [Actinosynnema mirum DSM 43827]
 gi|255924273|gb|ACU39784.1| ATP-dependent DNA helicase RecG [Actinosynnema mirum DSM 43827]
          Length = 733

 Score =  363 bits (931), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 231/687 (33%), Positives = 369/687 (53%), Gaps = 53/687 (7%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI--LLND 96
           T   DLL ++P  + +R    +IS +     VT+   +       ++ RR   +  ++ D
Sbjct: 27  TTVGDLLRHYPRRYDERGKLTEISGLELGEHVTVQARVKSARLKNMRARRGEMLDAVITD 86

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY----IFHNSQDVN 152
           GT E+ L+FF R +  ++       K    GK+     ++ + HP Y        + D  
Sbjct: 87  GTSELHLVFFGRGSRKVERELLPNTKAMFAGKVGIFNGKLQLAHPDYEIVDGLTGADDGG 146

Query: 153 FPLIEA--------VYSLPTGLSVDLFKKIIVEALSRLPVLPE-WIEKDLLQKKSFPSIA 203
             +  +        VY    G+      K + + L+    + E  + ++L + +   ++ 
Sbjct: 147 GAVTASKFADAFIPVYPAAQGIQSWNVAKCVEQVLAVWDGVEEDPLPEELRESEGLITLE 206

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIA 262
           +A   IH P     +   + A++RL +DE LA Q+AL   R     +       V G++A
Sbjct: 207 KALRDIHRP---DGWPAVTVAQQRLKWDEALAVQLALAQRRHSATARPASACPRVAGRVA 263

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
                 +PF  T  Q++    I +D+S    M R+LQG+VGSGKT+VAL AM   V++G 
Sbjct: 264 DAFDARLPFELTAGQQAVGDRIAEDLSATQPMNRLLQGEVGSGKTMVALRAMLQVVDSGR 323

Query: 323 QAVIMAPIGILAQQHY----EFIKKYTQNTQII-------VEIITGNMPQAHRRKALERI 371
           Q+ ++AP  +LA QH     E +    Q  ++        V ++TG+MP A R+KAL  I
Sbjct: 324 QSAMLAPTEVLAAQHARSLRELLGDLGQAGELGGAEHATRVTLLTGSMPAAQRKKALLEI 383

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTAT 429
             G+A I++GTHAL QD + +  L LV+VDEQHRFGV+QR  L+ +  +  PHVL+MTAT
Sbjct: 384 MTGEAGIVVGTHALIQDKVAFADLGLVVVDEQHRFGVEQRAALSARPGSAVPHVLVMTAT 443

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKA 485
           PIPRT+ +T  GD+++S + E P GR PIKT ++P       +D   +R+   + +G + 
Sbjct: 444 PIPRTVAMTVYGDLEVSALRELPGGRSPIKTSVVPTAEKPQWLDRAWQRIHEEVGKGHQV 503

Query: 486 YWICPQI-----------EEKKESNFR---SVVERFNSLHEHFTSS--IAIIHGRMSDID 529
           Y +CP+I           +EK + + R   +VV+  N L         I I+HGR++  D
Sbjct: 504 YVVCPRIGDGEDEDGKPPKEKGDPDKRPPLAVVDVANRLAAGPLKGLRIDILHGRLAPDD 563

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K++VM +F     ++L+ATTV+EVG++V +A++++I +A+ FG++QLHQLRGRVGRG   
Sbjct: 564 KDAVMRAFAANEVQVLVATTVVEVGVNVPNATVMVIMDADRFGVSQLHQLRGRVGRGSAP 623

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
             C+L+   P +  +  RL  +++T DGF +A+ DL+ R+EG+ILG  QSG    L    
Sbjct: 624 GLCLLVSEMPGASATMQRLRAVESTLDGFELAQLDLELRREGDILGAAQSGTRSGLKMLS 683

Query: 650 ELHD-SLLEIARKDAKHILTQDPDLTS 675
            L D   +E AR  A+ I+ +DPDL +
Sbjct: 684 LLRDEDTIEAARVVAQEIVERDPDLGA 710


>gi|226226849|ref|YP_002760955.1| ATP-dependent DNA helicase RecG [Gemmatimonas aurantiaca T-27]
 gi|226090040|dbj|BAH38485.1| ATP-dependent DNA helicase RecG [Gemmatimonas aurantiaca T-27]
          Length = 706

 Score =  362 bits (930), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 239/698 (34%), Positives = 378/698 (54%), Gaps = 26/698 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +L L+++        T   DLL + P  + D      I++ +    V+
Sbjct: 26  PVTYLKGVGPARALMLARL------GITVAGDLLRHVPHRYEDASTITPINDAAIGADVS 79

Query: 72  ITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           + G +        +K  R ++ ++ D +G I +   +     L     +G  +  TG ++
Sbjct: 80  VLGQVIAKGVLPTRKGLRVFQAVIQDSSGLIEI--AWPGQPFLDRTINKGDWLLCTGPVR 137

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEW 188
               R +    +  +  + +      + A+Y    GLSV + + ++ + L + LP++ E 
Sbjct: 138 FFHGRRLQPREYVNLGPDEEGTGGGRVLAIYPSTEGLSVRMLRSLVQQHLDALLPLVQEP 197

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK--Q 246
           +  D+LQ+   P++ EA  ++H P    + E     R RLA++ELL  Q+   L R+  Q
Sbjct: 198 LPADVLQEADVPALPEALRMVHRPASVAEAER---GRARLAFEELLCVQV---LHRRAHQ 251

Query: 247 FKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
             ++   G  +     +  ++   +P++ T +Q  A+++I  DM    RM R+LQGDVG+
Sbjct: 252 VARQARPGRALRSRRTLTTQLREQLPYALTAAQVRAVREIATDMGSPWRMHRLLQGDVGA 311

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VAL A   A+E G Q  +MAP  +LA+QH   +        I   ++TG +  A R
Sbjct: 312 GKTVVALFAALIAMENGAQVALMAPTELLAEQHARGMTALLAPLGIAPVLLTGRLSAADR 371

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R AL RIA     +++GTHAL Q  + +  L L I+DEQHRFGV+QR  L  K TA  VL
Sbjct: 372 RAALARIADPAPALVVGTHALLQSDVAFANLGLSIIDEQHRFGVEQRAVLGDKGTATDVL 431

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           LMTATPIPR+L LT  GD+D+S + E+P GR+PI TV+   +  D+V       L  G +
Sbjct: 432 LMTATPIPRSLALTLHGDLDVSVLDERPPGRQPITTVVRRESARDKVFAFAASELDAGHQ 491

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
            Y + P IE  ++ + ++    F++L     +   +A++HGR+   +++++M  F++G  
Sbjct: 492 LYVVYPLIETSEKIDLKNATTMFDTLVAGPLAGRQVALLHGRIPGEERDAIMRRFRDGEI 551

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
             L++TTVIEVGIDV +AS++IIE+ E FGL+QLHQLRGRVGRG+  S CILL    +  
Sbjct: 552 DALVSTTVIEVGIDVPNASVMIIEHPERFGLSQLHQLRGRVGRGQARSYCILLGD--VGG 609

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL +   TEDGF IA  DL+ R  G++ G +Q G P F +A     ++L + AR+ 
Sbjct: 610 EAAERLELFAGTEDGFEIARADLRLRGMGDLFGARQHGDPAFRVADLLRDEALHDTAREV 669

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A  +L QDP+L       +R LL +  Y  A    R G
Sbjct: 670 ADRLLAQDPELAQPAHAGLRHLLTV-GYARALDLFRVG 706


>gi|225016666|ref|ZP_03705858.1| hypothetical protein CLOSTMETH_00575 [Clostridium methylpentosum
           DSM 5476]
 gi|224950630|gb|EEG31839.1| hypothetical protein CLOSTMETH_00575 [Clostridium methylpentosum
           DSM 5476]
          Length = 694

 Score =  362 bits (930), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 225/606 (37%), Positives = 341/606 (56%), Gaps = 30/606 (4%)

Query: 90  YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT----VTGKIKKLKNRIIM--VHPHY 143
           +K+   DG G + +  F  +        ++G K+     + GK+       +M  ++   
Sbjct: 99  FKVYATDGAGNLAITIFNNRYA------YDGLKLEEEYLLYGKVG---GNFVMREMNSPL 149

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP-EWIEKDLLQKKSFPSI 202
           I     D+    ++ VY L  GL+  +      EALS +     E + K++L++    S 
Sbjct: 150 ILEAGGDLT---MQPVYPLTEGLTSKMVITNQKEALSMVTGGAYEPLPKEILEQYQLCSF 206

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
             A   IH P           AR+RL ++ELL  Q+ L L+++  K      + +     
Sbjct: 207 NFALQNIHFPVDPFSLGL---ARKRLVFEELLTWQLGLALVKQ--KNSTSTDVTLSDTSI 261

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +  L+ +PF+ T +Q+  I + L D S    M R++QGDVGSGKT+VA     A  + G 
Sbjct: 262 EPFLQALPFTLTSAQQRVIGECLADASSTVPMNRLVQGDVGSGKTMVAAALCYAMAKNGY 321

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q+ +MAP  ILA QH++ + +      +   ++TG++ +  +    E+I   +  +++GT
Sbjct: 322 QSAMMAPTEILASQHFKTLSQLLSPLGLRTCLLTGSLTKKQKELLKEQIRAKEVDVVVGT 381

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           HAL QDS ++  L LVI DEQHRFGV QR KL  K   PHVL+M+ATPIPRTL L   GD
Sbjct: 382 HALVQDSTEFASLGLVITDEQHRFGVNQRQKLVDKGEHPHVLVMSATPIPRTLALILYGD 441

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNF 500
           +DIS I E P GR+ I T  IP ++ +     +K  L EG++AY +CP IE  E++ +N 
Sbjct: 442 LDISIIDELPKGRQKIDTFFIPPSKRERAFGFIKQHLDEGRQAYIVCPMIENGEQEVANV 501

Query: 501 RSVVERF-NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
               +R    +   +T  + ++HG+M   +KE VM +F+ G  +LL+ATTV+EVG+DV +
Sbjct: 502 TGYAQRLREGVFAGYT--LGVLHGKMKAEEKEQVMRAFQTGETQLLVATTVVEVGVDVPN 559

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A I++IENAE FGL+QLHQLRGRVGRGE  SSCIL+      +N  +RL  + +T DGF 
Sbjct: 560 AVIMMIENAEMFGLSQLHQLRGRVGRGEHKSSCILVSGLKTEEN-LSRLGTMCSTSDGFA 618

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
           IAE+DLKQR  G+  G +Q G+P F IA      S+L+  ++ A+ I++QDP L  +  +
Sbjct: 619 IAEQDLKQRGPGDFFGKRQHGLPAFKIADMVEDLSVLKETQRLAREIVSQDPGLAELGHK 678

Query: 680 SIRILL 685
            +R L+
Sbjct: 679 GLRGLV 684


>gi|257420441|ref|ZP_05597431.1| ATP-dependent DNA helicase recG [Enterococcus faecalis X98]
 gi|257162265|gb|EEU92225.1| ATP-dependent DNA helicase recG [Enterococcus faecalis X98]
 gi|315154698|gb|EFT98714.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0043]
          Length = 678

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 218/628 (34%), Positives = 358/628 (57%), Gaps = 20/628 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           +LL Y+P  + D   +  +SEI ++  VT+ G +      S +  +K R  ++++     
Sbjct: 31  ELLTYYPFRYDDIQEK-DLSEIQDQEKVTLKGLVVSEAVVSRYGYKKSRLTFRMMQEHAV 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             I + FF +    LK+      +I V GK    +  +  +       +++D   P+   
Sbjct: 90  --INVSFFNQP--FLKDKVVLSEEIAVYGKWDAKRKSLNGMKILASKGDNEDFA-PIYHV 144

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
              +     V L +    E  S   ++ E +  DLL+K       EA   +H P   ++ 
Sbjct: 145 NKKVRQSTLVQLIRTAFEEYGS---LVEEILPNDLLEKYRLMPRKEAMWAMHFPSNPEE- 200

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
             +  A+ R+ ++E    Q+ +  ++KQ K E  G+ I  +    +   + +PF  T +Q
Sbjct: 201 --SHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDVDRLKTFTQGLPFELTGAQ 258

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +    +I +D+     M R+LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH
Sbjct: 259 KKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQH 318

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E +++     ++   ++TG+     RR  LE +A+G+  I++GTHAL Q  + +++L L
Sbjct: 319 MESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIVVGTHALIQQDVSFHQLGL 378

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P
Sbjct: 379 VITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIP 438

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           I+T  I   ++D V+E ++  L+ G +AY ICP IEE +  + ++  E F  +   ++  
Sbjct: 439 IETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPR 498

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG+M + +K+ +M  FK+   +LL++TTVIEVG++V +A++++I +A+ FGLAQ
Sbjct: 499 YQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGLAQ 558

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CIL+ +P  ++    R+ ++  T +GF+++E DL+ R  GE+ G
Sbjct: 559 LHQLRGRVGRGSSASYCILVANPK-NEMGVERMKIMTETTNGFVLSERDLELRGPGEVFG 617

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
            +QSG+P+F +       ++LE+AR++A
Sbjct: 618 ARQSGVPQFAVGDIVTDFNILEVARQEA 645


>gi|298373533|ref|ZP_06983522.1| ATP-dependent DNA helicase RecG [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274585|gb|EFI16137.1| ATP-dependent DNA helicase RecG [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 697

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 246/657 (37%), Positives = 366/657 (55%), Gaps = 39/657 (5%)

Query: 43  DLLFYHPSSFID--RHYRPKISEISEERI-VTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           DLL + P  +ID  R YR  I+E+S+    V + G I+        + R       DG+ 
Sbjct: 32  DLLLHFPYKYIDVRRFYR--IAELSDNMPHVQLHGRITDFEMKGQGRSRRLVGYFTDGSE 89

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH---YIFHNSQ-DVNFPL 155
            + L++F  +  + +  +  G++  V GK K+      M HP    Y   N + D+ F  
Sbjct: 90  SMELVWFAGEKYVTQK-YSVGQEYVVFGKPKRWGKVFTMPHPEIEPYEGENRRADIGF-- 146

Query: 156 IEAVYSLPTG-----LSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNII 209
              +Y+         L     + II   L+ + V +PE +   L+++    S  EA   +
Sbjct: 147 -RTMYNTTDTMKKHYLHSSALRDIIANLLNNVEVDVPETLPPYLIERYRLISRREAIYNM 205

Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLL--MRKQFKKE------IGIPINVEGKI 261
           H PR     +    A  RL ++EL   Q+++L   + +Q K E      +GI  N   K 
Sbjct: 206 HIPRNQVLLD---AATRRLKFEELFYIQMSILRQSVARQEKSEGFVMDRVGIHFNDFYK- 261

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
                 N+PF+ T++Q+  IK+I  D+    +M R+LQGDVGSGKT+VAL++   A++ G
Sbjct: 262 -----NNLPFTLTEAQKRVIKEIHADLKSGRQMNRLLQGDVGSGKTIVALLSSLIAIDNG 316

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA IMAP  ILA QHY  I + T+   I V ++ G+  +  R +    +  G+  IIIG
Sbjct: 317 FQACIMAPTEILATQHYTGIARLTEGLGINVRLLIGSTKKKDRDQIHRMLESGELDIIIG 376

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSL 440
           THAL +D +++  L  VI+DEQHRFGV QR KL  K    PH+L+MTATPIPRTL +T  
Sbjct: 377 THALIEDKVKFRNLGFVIIDEQHRFGVAQRAKLWAKNIQPPHILVMTATPIPRTLAMTVY 436

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           G++DIS I E P GRKPIKT     N+  ++   L+  L    + Y + P I+E ++ + 
Sbjct: 437 GNLDISVIDELPPGRKPIKTYHYYDNKRQDLYRFLRHRLDNKAQVYIVYPLIQESEKLDL 496

Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           +++ + +N++ E F    I  +HG+M+  +K+  M  FK+G   +L++TTVIEVG+DV +
Sbjct: 497 KNLEDGYNAMCEVFPDIKIDFLHGKMTPAEKDERMARFKSGQTGILMSTTVIEVGVDVPN 556

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           AS+++IE+AE FGL+QLHQLRGRVGRG E S CIL+    +S NS  RL ++  T +GF 
Sbjct: 557 ASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILMSSFKISDNSLRRLQIMTETNNGFE 616

Query: 620 IAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           IAE DL  R  GE+ G  QSG+P +  +A       +L+ AR  AK IL +DP L +
Sbjct: 617 IAEADLTLRGPGELEGTAQSGLPFELHVANLARDGIVLQAARDTAKQILDRDPRLEA 673


>gi|167765297|ref|ZP_02437410.1| hypothetical protein BACSTE_03685 [Bacteroides stercoris ATCC
           43183]
 gi|167696925|gb|EDS13504.1| hypothetical protein BACSTE_03685 [Bacteroides stercoris ATCC
           43183]
          Length = 698

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 235/667 (35%), Positives = 370/667 (55%), Gaps = 21/667 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   +     F DLL+Y P  ++DR    +I EI      + + G I
Sbjct: 14  GVGPQRASVLNKELGIFS-----FHDLLYYFPYKYVDRSRIYRIREIDGAMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F +  + L   +   ++  V GK      RI
Sbjct: 69  LGFETAGEGRQRRLIAHFSDGTGIVDLIWF-QGIKYLIGKYKVHQEYIVFGKPTVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP     +   ++   ++  Y+    +         +E + +  V      LPE + 
Sbjct: 128 NIAHPDIDPASELKLSAMGLQPYYNTTEKMKRSSLNSHAIEKMMKSLVGQLNEPLPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFKK 249
             LL +     + +A   IH P      +    A  RL ++EL   Q+ +L   K + +K
Sbjct: 188 PALLAEHHLMPLTDALMNIHFPSGP---DVLRKAEYRLKFEELFYVQLNILRYAKDRQRK 244

Query: 250 EIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
             G      G I      RN+PF  T +Q+  +K+I +D+    +M R+LQGDVGSGKTL
Sbjct: 245 YWGYVFEKVGDIFNGFYSRNLPFELTNAQKRVLKEIRRDLGAGRQMNRLLQGDVGSGKTL 304

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL++M  A++ G QA +MAP  ILA QHYE I++      + VE++TG++    R   L
Sbjct: 305 VALMSMLIALDNGYQACMMAPTEILANQHYETIRELLYGMDVRVELLTGSIKGKRRETIL 364

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427
             +  G   I+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L T+    PH+L+MT
Sbjct: 365 SGLLTGDVQILIGTHAVIEDTVNFASLGLVVIDEQHRFGVAQRARLWTKSVQPPHILVMT 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S I E P GRKPI T+    +    +   ++  + EG++ Y 
Sbjct: 425 ATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDSHRVSLYRSVRKQIDEGRQVYI 484

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ M  F +G  ++++
Sbjct: 485 VYPLIKESEKIDLKNLEEGYLHICEEFPDCRVCKVHGKMKPAEKDAQMQLFVSGEAQIMV 544

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+    L++++  
Sbjct: 545 ATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTGYKLAEDTRK 604

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKH 665
           RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  R+ A+ 
Sbjct: 605 RLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVREVAQT 664

Query: 666 ILTQDPD 672
           I+ +DP+
Sbjct: 665 IVDKDPN 671


>gi|326803889|ref|YP_004321707.1| ATP-dependent DNA helicase RecG [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651420|gb|AEA01603.1| ATP-dependent DNA helicase RecG [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 679

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 236/666 (35%), Positives = 379/666 (56%), Gaps = 37/666 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+S   GVG K +  L ++            DLL   P  + D   +  I E+++ +  T
Sbjct: 7   PVSVLTGVGPKKAALLKRL------KIESIYDLLCQFPFRYEDLSVK-SIQELADNQKAT 59

Query: 72  ITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           + G +      S F+ +K       L      I + FF      LK       +I + G 
Sbjct: 60  LKGRVVTEPVVSYFRGRKGNRLHFRLQVDHEIINVNFF--NQAYLKRQIHSQEEILIYGT 117

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPE 187
            +  + +++ +    I  +S+D       +VY    GLS    +++I  AL +    +PE
Sbjct: 118 YEAKRQQLLGIK--LINFSSEDNE---TASVYHTTKGLSQSALRQLIKTALDQYEDQIPE 172

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            I ++L ++       +A  ++H P    D   +  AR ++ Y EL      L  +R Q+
Sbjct: 173 LIPEELSRRYQLIPHRQAIRLMHFPNTEAD---SQHARRQIKYQELF-----LYSLRIQW 224

Query: 248 KK------EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +K      E G+ I  +    ++ +R+IPF  T+ Q+     I +D+ Q   M R+LQGD
Sbjct: 225 RKLNQRYQEAGVQILYDNDQLKEFIRSIPFELTQGQKEVTNQICRDLLQPYPMNRLLQGD 284

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VALIA+AAAV AG Q  +M P  ILA+QH++  +   Q T +   ++TG+   
Sbjct: 285 VGSGKTIVALIALAAAVSAGFQGALMVPTEILAEQHFKEAQSIYQATGLRCALLTGSTKG 344

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R++ L ++A G   ++IGTHALFQ+ + +  L LVI+DEQHRFGV+QR +L  K T  
Sbjct: 345 KERKQILAQLAQGDLDLMIGTHALFQEDVHFKDLGLVIIDEQHRFGVKQRRQLIDKNTDR 404

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P+VL MTATPIPRTL +T +GD+++SK+ E PAGR+P+KT+ +      +V   LK  L
Sbjct: 405 HPNVLYMTATPIPRTLEITLMGDMEVSKLKELPAGRQPVKTLWLRPQEASQVDYLLKQEL 464

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSF 537
           ++G++AY ICP + E ++   ++  + +      F     + ++HG++S+ +KE+VM ++
Sbjct: 465 AKGRQAYIICPLVGESEKVEAQNAEKIYADYQARFGDHYQVGLLHGQLSNEEKEAVMQAY 524

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            + T +LL+ATTV+EVG++V +AS+++I +A+HFGLAQLHQLRGRVGRG+  S C+LL  
Sbjct: 525 SDNTIQLLVATTVVEVGVNVPNASLMVILDADHFGLAQLHQLRGRVGRGQAASFCLLLAD 584

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           P  ++N   R+ ++  + DGF ++++DL+ R  G+  G KQSG+P+F +A P     +LE
Sbjct: 585 PH-TENGKERMRIMTESNDGFYLSQQDLELRGAGDYFGTKQSGLPEFHLADPVEDGEILE 643

Query: 658 IARKDA 663
            +R+DA
Sbjct: 644 YSRQDA 649


>gi|323441002|gb|EGA98709.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus O11]
          Length = 686

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 217/636 (34%), Positives = 359/636 (56%), Gaps = 24/636 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ Y P+ + D      +++  ++  VTI G +          R   K+ ++     I 
Sbjct: 37  DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154
           +   +     LK      + ITV GK  ++K  I     + +F NSQ        DV   
Sbjct: 96  VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            +E VY +  G+     +  I +AL+ + +  EW+  +L +K    ++    N +H+P+ 
Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208

Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            +D      AR   A+ EL   ++ +  L R +   +  I I+ +    +  +  +PF  
Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFEL 265

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q+S++ DI +D+    RM R+LQGDVGSGKT+VA I M A   AG Q+ +M P  IL
Sbjct: 266 TEAQKSSVNDIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH E +     ++ + V ++TG++    R+  LE++ +G    +IGTHAL QD + ++
Sbjct: 326 AEQHAESLIALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            + LVI DEQHRFGV QR  L +K    +VL MTATPIPRTL ++  G++D+S I + P 
Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512
           GRKPI T      + D+V+ ++   L +G++AY ICP IE  +   + ++VV  + SL +
Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504

Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           ++  S + ++HG++S  +K+ VM  F N    +L++TTV+EVG++V +A+ ++I +A+ F
Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+ LHQLRGRVGR ++ S C+L+  P  ++    R++++  T DGF ++E DL+ R  G
Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659


>gi|169342649|ref|ZP_02863691.1| ATP-dependent DNA helicase RecG [Clostridium perfringens C str.
           JGS1495]
 gi|169299155|gb|EDS81225.1| ATP-dependent DNA helicase RecG [Clostridium perfringens C str.
           JGS1495]
          Length = 690

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 244/678 (35%), Positives = 377/678 (55%), Gaps = 46/678 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           ++  +   +GVG K    L+K+           +DLL Y P     R Y     +IS   
Sbjct: 16  IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFP-----RDYEFLNDDIS--- 61

Query: 69  IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEML---------KNVF 117
              + G  S   +    K + Y   I   +G    T+ F Y   +++         K  F
Sbjct: 62  ---LNGDTSDEKAILKCKAKSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQPYIKRNF 118

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G +  + GK KK+ N + +++P       ++ N   I  +Y+L  GL+  +  K+I E
Sbjct: 119 ILGNEYNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINE 175

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
            L  + ++ E +  ++++K    S+ +A   IH P    + +    A  RL + EL    
Sbjct: 176 ILKNM-IIKENLPDEIVKKYKLISLDKAIRSIHFPAGRGELQ---SAINRLKFQELFTYS 231

Query: 238 IALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + +++M+   KKE  GI   +   + + +  ++P++ T +Q   +++IL D  +   M R
Sbjct: 232 LKIIMMKAHIKKENSGISFKM-SPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNR 290

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVALI+M      G Q V+MAP  ILA QHY   KKY     + +E++T
Sbjct: 291 LVQGDVGSGKTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLDQFGVDIELLT 350

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+  +  +++  E+IA G+  ++IGTHAL QD ++   L LV+ DEQHRFGV+QR +L  
Sbjct: 351 GSTKEKEKKRIKEKIASGKEIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLIN 410

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERL 475
           K     VL+MTATPIPRTL L    D+DIS I E P GRKPI T+++ +N R+      L
Sbjct: 411 KNKRADVLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFAL 470

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533
           K V  +G++ Y + P IEE ++ N  SV + +  L         I I+HG+M+  +K+ +
Sbjct: 471 KEV-EKGRQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMAGKNKDKI 529

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +++FKNG  K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE  S CI
Sbjct: 530 INTFKNGEIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCI 589

Query: 594 LLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           L+ +   +KN  T  R+ ++  + DGF IAEEDLK R  GE+ G++Q G   F++A    
Sbjct: 590 LIAN---TKNDITRRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVD 646

Query: 652 HDSLLEIARKDAKHILTQ 669
             ++L+ A  +AK I+  
Sbjct: 647 DINILKCANHEAKLIVNN 664


>gi|153004936|ref|YP_001379261.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter sp. Fw109-5]
 gi|152028509|gb|ABS26277.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter sp. Fw109-5]
          Length = 908

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 226/639 (35%), Positives = 344/639 (53%), Gaps = 11/639 (1%)

Query: 45  LFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITL 103
           L + P ++ DR    +I E+       + G +      +++  RP  K+ L+D +G + L
Sbjct: 245 LEFFPKAYQDRTQVRRIVELRAGDEGIVHGTVGHVRVQRMRNGRPLLKVGLSDPSGALEL 304

Query: 104 LFFYRKTEMLKNVFFEGRKITVTGKIKK-LKNRIIMVHPHYIFHNSQD-VNFPLIEAVYS 161
           +FF       +  F  G  +  +GK+ +    R  M  P      + D  +F  I  +Y+
Sbjct: 305 VFFNPPPWRARQ-FAAGDALLCSGKVTEGFGRRFQMSQPEVEKLQAGDSASFGRIVPIYA 363

Query: 162 LPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF-- 218
            P        +K++   +    P+  + +   +  ++   S AEA    H P    D   
Sbjct: 364 GPADYQHPALRKLVKRLVDEYAPLAVDDLPPQVRARRGLLSRAEALRDAHFPGAGTDLVA 423

Query: 219 --EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
             E  +P   RL ++EL   Q+AL L R+  + E GI  +       + L  +PF  T +
Sbjct: 424 AAERATPGFRRLVFEELFFLQLALALRRRGVRAEAGIAFDASPAAIARALELLPFRLTGA 483

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  A+ +I +DM++   M R+LQGDVGSGKT VA  AM  AV +G QA IM P  +LA+Q
Sbjct: 484 QARALDEIARDMARPEPMNRLLQGDVGSGKTAVAFAAMMLAVRSGHQAAIMVPTELLAEQ 543

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H   +  + Q T + V ++        +++   R+A G A I +GTHAL +  + + +L 
Sbjct: 544 HARTLAGWLQGTGVEVALVAAAARGKGQKETRARVADGTARIAVGTHALLEQDVAFERLG 603

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LV+VDEQHRFGV QR KL  K   P VL+MTATPIPRTL L   GD+D SKI E P GR 
Sbjct: 604 LVVVDEQHRFGVLQRAKLISKGHRPDVLVMTATPIPRTLALAFYGDLDQSKIGELPPGRT 663

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           P+ T +   ++     E  +  L  G++ Y + P + E ++S+          L   F  
Sbjct: 664 PVATKVYGDSQRRGAYEVARRELEAGRQVYVVYPLVAESEKSDLADATSGAEELRRVFAG 723

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HG++   +K++VMD F+ G  ++L+ATTVIEVG+DV +AS++I+E+AE FGL+Q
Sbjct: 724 HEVGLLHGKLKADEKQAVMDRFRTGALRVLVATTVIEVGVDVPNASVMIVEHAERFGLSQ 783

Query: 576 LHQLRGRVGRGEEISSCILLYH-PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           LHQLRGRVGRG   S C+L+ H   +   +  RL  +  T+DGF +A  DL+ R  GE+L
Sbjct: 784 LHQLRGRVGRGAARSHCLLIAHFKRVGDEARERLQAMAETQDGFEVARVDLRIRGPGELL 843

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           G +QSG   F IA     +++LE AR+DA  ++  DP+L
Sbjct: 844 GTRQSGQKLFEIADLYRDEAILEEAREDAFALVDADPEL 882


>gi|110799799|ref|YP_696417.1| ATP-dependent DNA helicase RecG [Clostridium perfringens ATCC
           13124]
 gi|110674446|gb|ABG83433.1| ATP-dependent DNA helicase RecG [Clostridium perfringens ATCC
           13124]
          Length = 690

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 245/678 (36%), Positives = 377/678 (55%), Gaps = 46/678 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           ++  +   +GVG K    L+K+           +DLL Y P     R Y     +IS   
Sbjct: 16  IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFP-----RDYEFLNDDIS--- 61

Query: 69  IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEML---------KNVF 117
              + G  S   +    K + Y   I   +G    T+ F Y   +++         K  F
Sbjct: 62  ---LNGDTSDEKAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQPYIKRNF 118

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G +  + GK KK+ N + +++P       ++ N   I  +Y+L  GL+  +  K+I E
Sbjct: 119 ILGNEYNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINE 175

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
            L  + ++ E +  ++++K    S+ +A   IH P    + +    A  RL + EL    
Sbjct: 176 ILKNM-IIKENLPDEIVKKYKLISLDKAIRSIHFPAGRGELQ---SAINRLKFQELFTYS 231

Query: 238 IALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + +++M+   KKE  GI   +   + + +  ++P++ T +Q   +++IL D  +   M R
Sbjct: 232 LKIIMMKAHIKKENSGISFKM-SPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNR 290

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVALI+M      G Q V+MAP  ILA QHY   KKY     + +E++T
Sbjct: 291 LVQGDVGSGKTLVALISMFNVYINGYQTVLMAPTEILANQHYAEAKKYLDKFGVDIELLT 350

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+  +  +++  E+IA G+  ++IGTHAL QD ++   L LV+ DEQHRFGV+QR +L  
Sbjct: 351 GSTKEKEKKRIKEKIASGKEIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLIN 410

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERL 475
           K     VL+MTATPIPRTL L    D+DIS I E P GRKPI T+++ +N R+      L
Sbjct: 411 KNKRADVLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFAL 470

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533
           K V  +G++ Y + P IEE ++ N  SV + +  L         I I+HG+M+  DK+ +
Sbjct: 471 KEV-EKGRQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDIRIEILHGKMAGKDKDKI 529

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +++FKNG  K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE  S CI
Sbjct: 530 INTFKNGEIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCI 589

Query: 594 LLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           L+ +   +KN  T  R+ ++  + DGF IAEEDLK R  GE+ G++Q G   F++A    
Sbjct: 590 LIAN---TKNDITRRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVD 646

Query: 652 HDSLLEIARKDAKHILTQ 669
             ++L+ A  +AK I+  
Sbjct: 647 DINILKCANHEAKLIVNN 664


>gi|297184106|gb|ADI20225.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 696

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 244/700 (34%), Positives = 380/700 (54%), Gaps = 33/700 (4%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI-SEERI 69
           +P+    G+G   +  L++    G     +FI+   ++P  ++D+     I  + +    
Sbjct: 6   SPIVYAPGIGPDRAALLAE--EFGIRTIAQFIE---HYPFRYVDKSQFHTIGSLHAHSGE 60

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           V I G I +       ++R       DG G I L++F +  + +K        + V GK+
Sbjct: 61  VQIKGQIVKIDELGAPRQRRLVATFTDGEGFIELVWF-KGAKWVKKSLKPNTPMVVYGKM 119

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALSR-LP 183
                +  + HP  I+  SQ V    +E VYS        GL+     +++ E L + L 
Sbjct: 120 NDFNGKKSLPHPE-IYAPSQ-VEDSAVEPVYSTTEKLTKRGLNSKGIARVMKEVLKKELG 177

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
              E   +    K    S  +A N IH P  A+  E    AR+R+ ++E    Q  L   
Sbjct: 178 QFEETFSEAFRTKHQLISKIQALNWIHFPPSAQHLE---AARKRIKFEEFFFLQ--LTQQ 232

Query: 244 RKQFKKEIGIPINVEGKIAQKILR----NIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           R + +++  I      ++ Q  L     ++PF  T++Q+  +K+I  D+    +M R++Q
Sbjct: 233 RNKLRQKTAIKGYTFKEVGQFFLNFYSNHLPFKLTQAQKRVVKEIRGDVRTGAQMNRLVQ 292

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+AM  A++ G QA +MAP  ILA QHY  +K+      I V ++TG+ 
Sbjct: 293 GDVGSGKTIVALLAMLLAIDNGYQAALMAPTEILATQHYNGLKELCDPAGISVALLTGST 352

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
           P A R +    +  G   I+IGTHAL + ++++  L L ++DEQHRFGV QR KL +K  
Sbjct: 353 PAARRAEIHTGLKEGSLQILIGTHALIEPTVKFANLGLAVIDEQHRFGVAQRAKLWKKNE 412

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKV 477
             PHVL+MTATPIPRTL ++  GD+DIS I E P GRKP+KT+ +   NR+ ++   ++ 
Sbjct: 413 HPPHVLVMTATPIPRTLAMSVYGDLDISVIDELPPGRKPVKTLHLFDKNRL-KLNGFMQR 471

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVM 534
            ++ G++ Y + P IEE ++ + +++   +  L   F      IA++HGRMS  +KE  M
Sbjct: 472 EIAAGRQVYVVFPLIEESEKLDLKNLEVGYEQLLRDFPRPQYQIAVVHGRMSAAEKEGEM 531

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G   +++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL
Sbjct: 532 QRFAKGKANIMVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGSDESYCIL 591

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +    LS ++ TRL  +  T DGF IAE D++ R  G+++G +QSG  +F +A       
Sbjct: 592 VSSFKLSSDAKTRLETMVRTSDGFEIAEVDMQLRGPGDLMGTRQSGQLQFKLASLLNDGP 651

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIR---ILLYLYQYN 691
           +L   ++  + +L  D  L     QSI+   I LY  Q+ 
Sbjct: 652 ILNWTKEVVEQLLRNDAQLIHPDHQSIKSRWIELYKDQWG 691


>gi|193212054|ref|YP_001998007.1| ATP-dependent DNA helicase RecG [Chlorobaculum parvum NCIB 8327]
 gi|193085531|gb|ACF10807.1| ATP-dependent DNA helicase RecG [Chlorobaculum parvum NCIB 8327]
          Length = 710

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 232/698 (33%), Positives = 374/698 (53%), Gaps = 40/698 (5%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           PS   P+ + L + +GVG K +  L++      A      DL  Y P  ++DR    +I+
Sbjct: 2   PSSSVPI-SSLQSIKGVGPKRAAVLAE------AGIRSVADLYDYFPRRYLDRTVIRRIA 54

Query: 63  EISE-ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           ++ + E +  +            + R  +K  ++DG+G + L +F R           G 
Sbjct: 55  QLRDGESVTVVGTVTGTRLEGGGRGRGRFKATVSDGSGVLELTWF-RSVHYFSKSIHSGD 113

Query: 122 KITVTGKIKKLKNRIIMVHPHY--IFHNSQDVN------------------FPLIEAVYS 161
            + V G++        M HP Y  +  + +D                    +P  +A+  
Sbjct: 114 MLAVHGRVSFFGRTPGMQHPDYDRLGGSGEDGRAEGSADGELYKTGGIIPLYPTSDAMKQ 173

Query: 162 LPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
              G++    + I+  A   + P + E++  ++++      I EA+  +H P  A+  E 
Sbjct: 174 --GGVNSGTLRAIVHRAFRDQPPRITEYLTPEIMEAYGLMPIGEAYRQLHFPDSAELLER 231

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQES 279
              AR R+ + EL   Q+   L R + ++ +        G     +   +PF  T  Q+ 
Sbjct: 232 ---ARYRMKWSELFFAQLFFALRRTEERRSLTSARFERSGDKTAGLHERLPFEMTGDQKR 288

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A+K+I  D+   ++M R++QGDVGSGKTLVA  AM  AV+ G QA  MAP  ILA QHY 
Sbjct: 289 AVKEIYHDLRSGHQMNRLVQGDVGSGKTLVAQFAMTLAVDNGLQAAFMAPTEILAFQHYI 348

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            +K+  +   + V ++TG   +  R + L R+  G+  I +GTHA+ +  +++ +L L I
Sbjct: 349 GLKQVLEPLGVTVALLTGRQKKKLREEQLARLESGEIDIAVGTHAIIEAGVRFRRLGLAI 408

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DEQHRFGV QR  L  KA  PHVLLMTATPIPRTL +   GD+D+S I E PAGR+PI+
Sbjct: 409 IDEQHRFGVMQRKALQDKAENPHVLLMTATPIPRTLTMGIYGDLDVSIIAEMPAGRQPIQ 468

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-S 517
           T +   ++  E+   L+  ++EG++AY + P +EE ++ + ++  E +  L  E F    
Sbjct: 469 TRLCREDQKPELYRLLRKQIAEGRQAYIVYPLVEESEKMDLKAATESYEQLRGEVFPELR 528

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + +IHG++   +KE+VM +F++G   +L+ TTVIEVG+DV +A++++IE+AE FG++QLH
Sbjct: 529 LGLIHGKLPAEEKEAVMAAFRSGELDILVGTTVIEVGVDVPNATVMVIEHAERFGISQLH 588

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG   SSC L+Y   ++ ++  RL  +  T DGF ++E DL+ R  G +LG +
Sbjct: 589 QLRGRVGRGTHRSSCYLVY-AKMAGDAKERLQAMAATNDGFRLSEIDLQLRGAGNMLGRE 647

Query: 638 QSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLT 674
           QSG    L IA       ++  AR  A  ++ +D  L+
Sbjct: 648 QSGTASSLRIADLMTDGEIMRSARAAAFELVEKDETLS 685


>gi|302036761|ref|YP_003797083.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii]
 gi|190343176|gb|ACE75564.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii]
 gi|300604825|emb|CBK41157.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii]
          Length = 846

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 233/719 (32%), Positives = 386/719 (53%), Gaps = 41/719 (5%)

Query: 1   MRPSFLNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP 59
           +R S   PL+   +   +GVG K +L L ++     A+       L+  P  + DR    
Sbjct: 123 VRSSPARPLWELSIQYAKGVGPKRTLLLERL----GAHTVE--QALWTLPWRYEDRSVIT 176

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVF 117
            ++E+      ++ G I++  + + + RR     + + D TG +  +FF +    L++V 
Sbjct: 177 PVAELVPGATRSVCGVITRTEATRARVRRLSILDVAVQDATGTVHAVFFNQP--YLEDVL 234

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHY----IFHNSQD--VNFPLIEAVYSLPTGLSVDLF 171
            EG ++ ++G++   +     V        +    +D  ++   I ++Y    G +    
Sbjct: 235 KEGLRVMMSGRVAAGRGGWTEVRLEATQFEVLGGGEDELLHVGRIVSIYHETKGWTSRQM 294

Query: 172 KKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARE 226
           + ++   L+     + E +   +  +   P I EA   +H P    D     +  + A  
Sbjct: 295 RILMQGLLAEYGADMEEVLPLSVRARHRLPPIGEAIQQVHFPLPKTDLTALDQGVTSAHR 354

Query: 227 RLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           RL ++ELL  Q A++L +++ K+E      N      +++ + +PF+ T +QE    +I 
Sbjct: 355 RLVFEELLLLQAAIVLRQREMKEEPKAFRFNPHVSQLKQLAKVLPFALTSAQERVFHEIQ 414

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            DM     M R++QGDVGSGKT+VAL A+  A  +G Q  +M P  ILA+QHY  +    
Sbjct: 415 ADMVSSRPMNRLVQGDVGSGKTVVALHALVMACGSGCQTALMVPTEILAEQHYLNLAPLL 474

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +   +   ++T       R + L+++  G A + IGTHAL Q  +++ +L LVIVDEQH+
Sbjct: 475 EAVGLKAVLLTSGGKAKDRNETLKQLESGAAQVAIGTHALIQKKVRFARLGLVIVDEQHK 534

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV QR  L +K   P VL+MTATPIPRTL +T  GD+D+S I   P GRKP++T++   
Sbjct: 535 FGVLQRKTLLEKGYRPDVLVMTATPIPRTLAMTVYGDLDVSVIDMLPPGRKPVRTLLYTD 594

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHG 523
            +  +  + +   L  G++ Y + P +EE ++ + ++ ++    L       + + ++HG
Sbjct: 595 GQRHKTWQLVGDELKAGRQVYIVYPLVEESEKVDLKAAIQGAEHLQREIFPQARVGLLHG 654

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           R+   +KE  M +FK GT ++L+ATTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRV
Sbjct: 655 RLPTAEKERTMAAFKAGTIQVLVATTVIEVGVDVPNATVMVIEHAERFGLAQLHQLRGRV 714

Query: 584 GRGEEISSCILL-------YHPPLSKN---------SYTRLSVLKNTEDGFLIAEEDLKQ 627
           GRG + S CIL+           +S++         +  RL+ L N+ DGF+IAEEDL+ 
Sbjct: 715 GRGAQQSLCILMATYLAREARARVSRDGRPEENVSGAQQRLAALVNSNDGFVIAEEDLRI 774

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
           R  GE LG++Q G+P+F  A       LLE AR++A  +L QDP LT  + Q+ +  ++
Sbjct: 775 RGPGEFLGLRQWGVPEFRAANLVRDAQLLEQARQEAVALLEQDPGLTLPQHQAFKAAMF 833


>gi|116671056|ref|YP_831989.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116611165|gb|ABK03889.1| ATP-dependent DNA helicase RecG [Arthrobacter sp. FB24]
          Length = 756

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 246/756 (32%), Positives = 383/756 (50%), Gaps = 92/756 (12%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           R +GK+ +  + K +       T    LL Y P  ++ R     ISE+  +  VT+   +
Sbjct: 11  RRIGKRSAAVIEKHLGI-----TTVGGLLNYFPRRYLSRGELTPISEVPLDEEVTLIARV 65

Query: 77  SQHSSFQLQKRRPY--KILLND---------------------GTGEITLLFFYR-KTEM 112
             +S+  ++ RR     +++ D                     GT +++    YR K E+
Sbjct: 66  VSNSTRAMRARRGTLTDVVITDDSATNHNSHGSAGRLPGAGVPGTLKVSFFNGYRAKAEL 125

Query: 113 LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---------VYSLP 163
           L      GR+   +GK+ +    + + +P ++  + +D + P ++          VY   
Sbjct: 126 LP-----GRRAMFSGKVTRYGGSLSLTNPDFLLLD-EDPDTPGMDPEKLAAMPIPVYPAT 179

Query: 164 TGLSVDLFKKIIVEALSRLPVLPEW--IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
             L+    +K+I   L  + +      +   +  ++ F    EA+ +IH P    D++  
Sbjct: 180 AKLTSWSIQKVISTLLDTVDLDVLDDPVPAGVSAREKFLPAPEAYRLIHTPEVPGDWQR- 238

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESA 280
             AR+R  Y E L  Q AL   R Q   E       V   I     R +PF+ T  Q + 
Sbjct: 239 --ARDRFRYQEALVLQAALARRRAQLAAEEATARRPVTDGILTAFDRQLPFTLTAGQSAV 296

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            K + +++SQ + M R+LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LA QH+E 
Sbjct: 297 GKTLAEELSQDSPMNRLLQGEVGSGKTIVALRAMLQVVDAGGQAALLAPTEVLAAQHFES 356

Query: 341 IKKY------------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           I++             +    + V ++TG+MP A R++A+   A G A I+IGTHAL  D
Sbjct: 357 IRRTLGPLSRDGLLGGSGPDTVQVTMLTGSMPTAARKQAMLDAASGTAGIVIGTHALLSD 416

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISK 447
           ++ +Y L L++VDEQHRFGV+QR  L  KA+  PH+L+MTATPIPRT+ +T  GD++ S 
Sbjct: 417 NVSFYDLGLIVVDEQHRFGVEQRDALRAKASKPPHLLVMTATPIPRTVAMTVFGDLETSV 476

Query: 448 ITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR-- 501
           + E PAGR PI T ++ +         +  R +  +  G + Y +CP+I E  + +F   
Sbjct: 477 LDELPAGRAPISTHVVGLAENPGWAGRIWSRSREEIDAGHQVYVVCPKIGEDDDGDFSPG 536

Query: 502 ----------------------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
                                 SVVE            +A +HGR   + K + M SF  
Sbjct: 537 EAEPSAADLEGDGPARELASVTSVVEHLQDEPALAGVPLAPLHGRQDPVLKSATMASFTA 596

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              KLL++TTVIEVG+DV +A++++I +A+ FG++QLHQLRGRVGRG    +C+L+    
Sbjct: 597 NETKLLVSTTVIEVGVDVHNATLMVILDADRFGISQLHQLRGRVGRGGLPGTCLLVTTLE 656

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEI 658
               S  RL  +  T DGF +++EDLK R+EG+ILG  QSG    L + +   H++++  
Sbjct: 657 PGHPSRRRLDAVAATTDGFELSQEDLKLRREGDILGASQSGGRSTLKLLRVLEHEAVIAK 716

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           AR+DA+ I+  DP LT     +  I  YL    EAF
Sbjct: 717 ARQDAQQIVAADPGLTDHSALAEAIDEYLNPEKEAF 752


>gi|27467820|ref|NP_764457.1| ATP-dependent DNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|251810657|ref|ZP_04825130.1| DNA helicase RecG [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876341|ref|ZP_06285208.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis SK135]
 gi|38605283|sp|Q8CSV3|RECG_STAES RecName: Full=ATP-dependent DNA helicase recG
 gi|27315364|gb|AAO04499.1|AE016746_289 ATP-dependent DNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|251805817|gb|EES58474.1| DNA helicase RecG [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295366|gb|EFA87893.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis SK135]
 gi|329736224|gb|EGG72496.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis VCU028]
          Length = 682

 Score =  362 bits (928), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 222/662 (33%), Positives = 363/662 (54%), Gaps = 26/662 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VT+
Sbjct: 13  LDKIKGIGPKRLALLEEL------NIKSVEDLVLYLPTRYEDNTV-IDLNQADDQATVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +    +     R   K+ ++     I +   +     LK        +T+ GK  + 
Sbjct: 66  QGEVYSSPTVAFFGRNKSKLTVHLMINHIAVKCVFFNQPYLKKKLELNSIVTIKGKWNRN 125

Query: 133 KNRIIMVHPHYIF----HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           K  I   + + IF     N +D +   +E +Y +  G+     +  I +ALS + +  EW
Sbjct: 126 KQEI---NGNRIFFKDQKNQEDTH---LEPIYRIKEGIKQKQLRDNIRQALSDVTI-HEW 178

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQF 247
           +  DL +K    ++A     +H+P   ++      AR   A+ EL   ++ +  L R + 
Sbjct: 179 LTDDLREKYKLETLAYTIQTLHHPINKQNL---LRARRTYAFTELFMFELRMQWLNRLEK 235

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +  I IN +    ++ + ++PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT
Sbjct: 236 TSDEAIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKT 295

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I M A   AG Q+ +M P  ILA+QH E + +   NT + V ++TG++    RR  
Sbjct: 296 VVAAICMYALKTAGYQSALMVPTEILAEQHAESLIQLFGNT-MNVALLTGSVKGKKRRLL 354

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           LE++ +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MT
Sbjct: 355 LEQLENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMT 414

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL ++  G++D+S I + P GRKPIKT      + D+V+ ++   L +G++AY 
Sbjct: 415 ATPIPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYV 474

Query: 488 ICPQIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IE  +   + ++VV  + SL   +    + ++HG+MS  DK+ VM  F      +L
Sbjct: 475 ICPLIESSEHLEDVQNVVALYESLQSDYGNEKVGLLHGKMSAEDKDQVMQKFSKHEIDIL 534

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++   
Sbjct: 535 VSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGI 593

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R++++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  
Sbjct: 594 ERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAE 653

Query: 666 IL 667
           ++
Sbjct: 654 LI 655


>gi|293366808|ref|ZP_06613484.1| DNA helicase RecG [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319109|gb|EFE59479.1| DNA helicase RecG [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329736575|gb|EGG72841.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis VCU045]
          Length = 682

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 222/662 (33%), Positives = 363/662 (54%), Gaps = 26/662 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VT+
Sbjct: 13  LDKIKGIGPKRLALLEEL------NIKSVEDLVLYLPTRYEDNTV-IDLNQADDQATVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +    +     R   K+ ++     I +   +     LK        +T+ GK  + 
Sbjct: 66  QGEVYSSPTVAFFGRNKSKLTVHLMINHIAVKCVFFNQPYLKKKLELNSIVTIKGKWNRN 125

Query: 133 KNRIIMVHPHYIF----HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           K  I   + + IF     N +D +   +E +Y +  G+     +  I +ALS + +  EW
Sbjct: 126 KQEI---NGNRIFFKDQKNQEDTH---LEPIYRIKEGIKQKQLRDNIRQALSDVTI-HEW 178

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQF 247
           +  DL +K    ++A     +H+P   ++      AR   A+ EL   ++ +  L R + 
Sbjct: 179 LTDDLREKYKLETLAYTIQTLHHPINKQNL---LRARRTYAFTELFMFELRMQWLNRLEK 235

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +  I IN +    ++ + ++PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT
Sbjct: 236 TSDEAIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKT 295

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I M A   AG Q+ +M P  ILA+QH E + +   NT + V ++TG++    RR  
Sbjct: 296 VVAAICMYALKTAGYQSALMVPTEILAEQHAESLIQLFGNT-MNVALLTGSVKGKKRRLL 354

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           LE++ +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MT
Sbjct: 355 LEQLENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMT 414

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL ++  G++D+S I + P GRKPIKT      + D+V+ ++   L +G++AY 
Sbjct: 415 ATPIPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYV 474

Query: 488 ICPQIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IE  +   + ++VV  + SL   +    + ++HG+MS  DK+ VM  F      +L
Sbjct: 475 ICPLIESSEHLEDVQNVVALYESLQSDYGNEKVGLLHGKMSAEDKDQVMQKFSEHEIDIL 534

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++   
Sbjct: 535 VSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGI 593

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R++++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  
Sbjct: 594 ERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAE 653

Query: 666 IL 667
           ++
Sbjct: 654 LI 655


>gi|223043764|ref|ZP_03613807.1| ATP-dependent DNA helicase RecG [Staphylococcus capitis SK14]
 gi|222442861|gb|EEE48963.1| ATP-dependent DNA helicase RecG [Staphylococcus capitis SK14]
          Length = 682

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 219/660 (33%), Positives = 369/660 (55%), Gaps = 22/660 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L ++    N N     DL+ Y P+ + D      +++  ++  VT+
Sbjct: 13  LDKIKGIGPKRLTILEEL----NINTVE--DLVLYLPTRYEDNTV-IDLNQAEDQSTVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +    +     R   K+ ++     I +   F+ +  + K +   G  +TV GK  +
Sbjct: 66  QGEVYSTPAVAFFGRNKSKLTVHIMVNNIAVKCVFFNQPYLKKKIELHG-TVTVKGKWNR 124

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
            K  I   + + +F N Q     + +E VY +  G+     +  I +AL  + +  EW+ 
Sbjct: 125 AKQEI---NGNRMFFNEQTTQDDVQLEPVYRIKEGIKQKQIRDNIRQALEDVTI-HEWLS 180

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKK 249
            DL +K    ++      +H+P   KD +    AR   A+ EL   ++ +  L R +   
Sbjct: 181 DDLREKYKLETLEYTLRTLHHP---KDKQSLLKARRTYAFTELFMFELRMQWLNRLEKSS 237

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           +  I I+ +    ++ +  +PF  T +Q++++ +I +D+    RM R+LQGDVGSGKT+V
Sbjct: 238 DEAIEIDYDISKVKQFINRLPFELTDAQKTSVNEIFRDLKAPIRMHRLLQGDVGSGKTVV 297

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A I M A   AG Q+ +M P  ILA+QH E + +   +T + V ++TG++    RR  LE
Sbjct: 298 AAICMYALKTAGFQSALMVPTEILAEQHAESLIELFGDT-MNVALLTGSVKGKKRRILLE 356

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           ++ +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MTAT
Sbjct: 357 QLENGSIDCLIGTHALIQDDVVFENVGLVITDEQHRFGVNQRQMLREKGAMTNVLFMTAT 416

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL ++  G++D+S I + P GRKPI T      + ++V+ ++   L +G++AY IC
Sbjct: 417 PIPRTLAISVFGEMDVSSIKQLPKGRKPIITSWAKHEQYEQVLAQMTSELRKGRQAYVIC 476

Query: 490 PQIEEKKE-SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           P IE  +   + ++VV  + SL E++ +  + ++HG+++  +K+ VM  F +    +L++
Sbjct: 477 PLIESSEHLEDVQNVVALYESLQEYYGAEKVGLLHGKLTSDEKDEVMQRFSDKDIDILVS 536

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R
Sbjct: 537 TTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIER 595

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           ++++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 596 MTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAELI 655


>gi|224476339|ref|YP_002633945.1| ATP-dependent DNA helicase RecG [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420946|emb|CAL27760.1| putative ATP-dependent DNA helicase RecG [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 685

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 221/662 (33%), Positives = 363/662 (54%), Gaps = 23/662 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L+++ N  N       DL+ Y P  + D      ++E  ++  VT+
Sbjct: 13  LEQIKGLGPKRIAVLNEL-NIYNVE-----DLVLYLPVRYEDNSI-VDLNEAEDQSTVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
           TG +    +     R   K+ ++     I +   +     LK        +TV GK  + 
Sbjct: 66  TGEVYSTPTVAFFGRNRSKVTVHLMINNIAVKAVFFNQPYLKKKINLHDHVTVKGKWNRA 125

Query: 133 KNRIIMVHPHYIF----HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           K  I   +   +F     + Q+ +   ++ VY +  G+     + II + L  + +  EW
Sbjct: 126 KQEI---NGMRMFTTGSEDLQNADGEQLDPVYRIKEGIKQKTMRDIIRKVLDDIEI-REW 181

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQF 247
           +  DL +K    S+A     +H     K+      AR   A+ EL   ++ +  L R + 
Sbjct: 182 LSDDLREKYKLESLATTIRALHYADNKKEL---LKARRTYAFTELFLFELRMQWLNRLEK 238

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +  I IN +    +K + ++PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT
Sbjct: 239 ASDEAIEINYDLAEVKKFIDDLPFELTDAQKHSVNEIFRDLKAPLRMHRLLQGDVGSGKT 298

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA + M A   AG Q+ +M P  ILA+QH E + +   + ++ V ++TG++    R+  
Sbjct: 299 VVAALCMFALKTAGYQSALMVPTEILAEQHAESLTELFGD-RMNVALLTGSVKGKKRKLL 357

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           LE++ +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MT
Sbjct: 358 LEQLENGTIDCLIGTHALIQDDVSFQNVGLVITDEQHRFGVNQRQALREKGAMTNVLFMT 417

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL ++  G++D+S I + P GRKPIKT+     + D V+ ++   L +G++AY 
Sbjct: 418 ATPIPRTLAISVFGEMDVSSIKQLPKGRKPIKTMWAKHEQYDTVLNQMTSELEKGRQAYV 477

Query: 488 ICPQIEEKKE-SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IE  +   + ++VV  + SL EH+ +  + ++HG+M   +K+ VM  F      +L
Sbjct: 478 ICPLIESSEHLEDVQNVVALYESLEEHYGAGRVGLLHGKMPADEKDDVMQRFNRHEIDIL 537

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A+ +II +A+ FGL+ LHQLRGRVGR +  S C+L+  P  ++   
Sbjct: 538 VSTTVVEVGVNVPNATFMIIYDADRFGLSTLHQLRGRVGRSDHQSYCVLIASPK-TETGI 596

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R++++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  
Sbjct: 597 ERMNIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANIVEDYRMLEVARDEAGE 656

Query: 666 IL 667
           ++
Sbjct: 657 LI 658


>gi|282927567|ref|ZP_06335183.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A10102]
 gi|282590570|gb|EFB95647.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A10102]
          Length = 686

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 216/636 (33%), Positives = 359/636 (56%), Gaps = 24/636 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ Y P+ + D      +++  ++  VTI G +          R   K+ ++     I 
Sbjct: 37  DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154
           +   +     LK      + ITV GK  ++K  I     + +F NSQ        DV   
Sbjct: 96  VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            +E VY +  G+     +  I +AL+ + +  EW+  +L +K    ++    N +H+P+ 
Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208

Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            +D      AR   A+ EL   ++ +  L R +   +  I I+ +    +  +  +PF  
Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFEL 265

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I M A   AG Q+ +M P  IL
Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH E +     ++ + V ++TG++    R+  LE++ +G    +IGTHAL QD + ++
Sbjct: 326 AEQHAESLMALFADS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            + LVI DEQHRFGV QR  L +K    +VL MTATPIPRTL ++  G++D+S I + P 
Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512
           GRKPI T      + D+V+ ++   L +G++AY ICP IE  +   + ++VV  + SL +
Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504

Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           ++  S + ++HG++S  +K+ VM  F N    +L++TTV+EVG++V +A+ ++I +A+ F
Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+ LHQLRGRVGR ++ S C+L+  P  ++    R++++  T DGF ++E DL+ R  G
Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659


>gi|282880443|ref|ZP_06289150.1| ATP-dependent DNA helicase RecG [Prevotella timonensis CRIS 5C-B1]
 gi|281305546|gb|EFA97599.1| ATP-dependent DNA helicase RecG [Prevotella timonensis CRIS 5C-B1]
          Length = 700

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 233/674 (34%), Positives = 374/674 (55%), Gaps = 33/674 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG K    L K +       + + DLL Y+P  ++DR    +I E+  +   V + G I
Sbjct: 14  GVGPKRKEILEKELQI-----STWGDLLEYYPYKYVDRSRIYRIGELRGDLPFVQLKGKI 68

Query: 77  SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
                F +   R   +   +DGTG + L++F R  + +   +    +  V G+      R
Sbjct: 69  LSFEEFAMGAHRKRVVAHFSDGTGVVDLVWF-RGAQYVYKTYKVNEEYIVFGRPSIYGGR 127

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ 195
               HP        DV    +  +   P  ++ +  KK+ + + S   +    +EK   Q
Sbjct: 128 YQFAHPD--IDKVTDVQ---LSEMGMQPYYMTTERMKKMGLTSRSLEKLTKTLVEKLFEQ 182

Query: 196 --KKSFP----------SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-L 242
              ++ P          S  EA + IH P+  +D +    A+ RL ++EL   Q+ +L  
Sbjct: 183 TISETLPPYIIGPLHLISRTEALHKIHYPKSLEDVQ---RAQVRLKFEELFYVQLNILRY 239

Query: 243 MRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
              Q +K  G      G +       N+PF  T +Q+  + +I  DM+   +M R++QGD
Sbjct: 240 AHDQRRKYRGYVFTQVGSLFHFFYHNNLPFELTNAQKRVMHEIRNDMATGQQMNRLVQGD 299

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVAL++M  A+  G QA +MAP  ILA+QH+  I+K+ +   + +E++TG +  
Sbjct: 300 VGSGKTLVALMSMLIAIGNGFQACMMAPTEILAEQHFATIRKFLRQMPVRIELLTGIVKG 359

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
             R + L  +  G+  I++GTHA+ +D++Q+ +L L +VDEQHRFGV QR KL  K+   
Sbjct: 360 KKREEILNGLLTGEVQILVGTHAVIEDNVQFSRLGLAVVDEQHRFGVAQRAKLWGKSQQP 419

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N++  + + ++  + 
Sbjct: 420 PHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKYDNQLTSLYQGIRQQIR 479

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           +G++ Y + P I E ++ + +++   + SL   F    ++ +HG+M   +K+  M  F  
Sbjct: 480 QGRQVYIVFPLITESEKIDLKNLEAGYESLCSIFPDMKLSKVHGKMKPKEKDLEMQKFSK 539

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L+ATTVIEVG+DV +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ +  
Sbjct: 540 GETQILVATTVIEVGVDVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVTNHK 599

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEI 658
           L++ +  R+ ++  T DGF IAE DLK R  G++ G +QSG+   L IA       L+++
Sbjct: 600 LTQETRKRIDIMCQTNDGFQIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLIQL 659

Query: 659 ARKDAKHILTQDPD 672
           AR +A+ I+  DPD
Sbjct: 660 ARDEAQKIINDDPD 673


>gi|295693180|ref|YP_003601790.1| ATP-dependent DNA helicase recg [Lactobacillus crispatus ST1]
 gi|295031286|emb|CBL50765.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus ST1]
          Length = 678

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 223/686 (32%), Positives = 378/686 (55%), Gaps = 28/686 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +  L      G+       DLLFY P  + +    P + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTTAAL------GSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56

Query: 67  ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + V + G ++     S F  +K R  +K+ ++    ++ ++ F+ +   LKN    G++
Sbjct: 57  GQKVMLKGIVATEAFVSRFGYKKTRLSFKMRIDH---DVIMVNFFNQP-WLKNKIEIGQE 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           + + GK    +  +      ++     D    P+      +     VDL    I + + +
Sbjct: 113 VAIYGKYNVARQSLTAFK--FVAAKENDSGMAPIYPVNRHVKQKKLVDLINVAIDDFIDQ 170

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           +  ++PE + ++    K    I +    +H+P+ + + E    A+    + E    ++ L
Sbjct: 171 VQDIVPEKLRQEYRLLKDQVIIEK----MHHPKNSHEAEL---AKRSAIFREFFIFELQL 223

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+ +   K++G     +     ++ +++PF  +  Q+  + +I  DM    +M R+LQG
Sbjct: 224 ALLTRNDGKQMGYAKKYDLTEIAQLTKSLPFELSDDQKHVVNEIFADMHSDGQMRRLLQG 283

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   + V ++TGN  
Sbjct: 284 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 343

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+    +  G  +++IGTHAL QDS+ + KL LVI+DEQHRFGV QR  L  K   
Sbjct: 344 TLERREIYCELTDGTINVVIGTHALIQDSVIFKKLGLVIIDEQHRFGVGQRQALINKGDQ 403

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P +L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +     +++ EV  +++  L+
Sbjct: 404 PDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQLN 463

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKN 539
           +G + Y + P I E +  + ++  E    L   F    + ++HG+M    K+ +M +F  
Sbjct: 464 QGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPDQKVVLLHGQMPGAQKDEIMAAFAA 523

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG   S C+ L  P 
Sbjct: 524 GEINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGRTQSYCVFLADPK 583

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            + +   R+ ++ +T DGF +AEEDLK R EG++ G  QSG+P+F +     + + L +A
Sbjct: 584 -TDSGKARMKIIASTNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVA 642

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685
           +K+A+ ++  DPDL+    ++++ +L
Sbjct: 643 QKEARALVAADPDLSDPGHKALKQVL 668


>gi|270290362|ref|ZP_06196587.1| ATP-dependent DNA helicase RecG [Pediococcus acidilactici 7_4]
 gi|270281143|gb|EFA26976.1| ATP-dependent DNA helicase RecG [Pediococcus acidilactici 7_4]
          Length = 675

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 219/646 (33%), Positives = 367/646 (56%), Gaps = 37/646 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DL+ Y+P  + D   + K  E+++++ VT  G ++     + F   K R  +++L+ + +
Sbjct: 32  DLITYYPFRYEDLAAK-KPQEVADQQKVTFQGIVATAPTIARFGRHKVRVNFRLLVENSS 90

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             + + FF +    +K      +++ + GK    +  +  +    I    Q      +EA
Sbjct: 91  --VMVTFFNQP--WIKKQLEANQEVAIYGKWDANRQSLTGIK---IITEEQG-----MEA 138

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
           VY     +     ++++  AL+        V+PE     L++K            +H P 
Sbjct: 139 VYPANKHIRQATIQQLVEAALNEYAEQVQDVIPE----ALIEKYRLMHRLAMIKALHFP- 193

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
              D + T  AR    ++E L  Q+ L +++ + + E G  I+ + ++ ++ ++ +PF  
Sbjct: 194 --GDEQITKQARRTAMFEEFLVFQMGLQVVKSRDRVEKGTKIDYQIQLVREFIQQLPFEL 251

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q+    +IL ++     M R+LQGDVGSGKT+VA IAM A + +G QA +MAP  IL
Sbjct: 252 TGAQKRVTNEILANLKSAWHMNRLLQGDVGSGKTVVAAIAMYATITSGHQAALMAPTEIL 311

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH   + K+  N  + + ++ G M +  R + LE +  G+  I+IGTHAL QD +++ 
Sbjct: 312 AEQHANNLIKFFANFDVKIGLLVGGMRKKVRNELLEAVKAGEIDIVIGTHALIQDDVEFK 371

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L I+DEQHRFGV QR KL QK   P +L MTATPIPRTL +T+ GD+D+S I + PA
Sbjct: 372 NLGLAIIDEQHRFGVNQRQKLRQKGANPDILAMTATPIPRTLAITAYGDMDVSIIDQLPA 431

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GRKP+ T  +     D+V+  ++    +G++A+ + P IEE +  + ++ +  +  L + 
Sbjct: 432 GRKPVVTKWLKKGEWDKVLALMEHEFKKGRQAFVVAPLIEESEVMDLQNAMTLYEELKDF 491

Query: 514 FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           F    +I I+HG+M   +K+ +M  FK G    L++TTVIEVG+DV +A++++I++A+ F
Sbjct: 492 FGQRYAIGILHGKMDGAEKDQIMADFKAGKYAGLVSTTVIEVGVDVPNATLMVIQDADRF 551

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRK 629
           GLAQLHQLRGR+GRG++ + C+L+  P   KN+    R+ ++  T +GF IAE DLK R 
Sbjct: 552 GLAQLHQLRGRIGRGQQQAYCLLVADP---KNAVGKQRMQIMVETNNGFRIAEADLKMRG 608

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           +G++ G +QSG+P+F +  P +    L+ A+ +A  I+ Q PD  S
Sbjct: 609 QGDLFGQQQSGVPEFKVGDPVVDLGALQTAQLEAAKIVNQ-PDWQS 653


>gi|15924217|ref|NP_371751.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926810|ref|NP_374343.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus N315]
 gi|148267718|ref|YP_001246661.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393776|ref|YP_001316451.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979548|ref|YP_001441807.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253315585|ref|ZP_04838798.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253731844|ref|ZP_04866009.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733535|ref|ZP_04867700.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006014|ref|ZP_05144615.2| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795717|ref|ZP_05644696.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9781]
 gi|258415941|ref|ZP_05682211.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9763]
 gi|258419688|ref|ZP_05682655.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9719]
 gi|258434860|ref|ZP_05688934.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A9299]
 gi|258444564|ref|ZP_05692893.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A8115]
 gi|258447603|ref|ZP_05695747.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A6300]
 gi|258449445|ref|ZP_05697548.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A6224]
 gi|258454824|ref|ZP_05702788.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A5937]
 gi|269202842|ref|YP_003282111.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892713|ref|ZP_06300948.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A8117]
 gi|295407165|ref|ZP_06816966.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A8819]
 gi|296275248|ref|ZP_06857755.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297245949|ref|ZP_06929808.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A8796]
 gi|54039024|sp|P64325|RECG_STAAN RecName: Full=ATP-dependent DNA helicase recG
 gi|54041651|sp|P64324|RECG_STAAM RecName: Full=ATP-dependent DNA helicase recG
 gi|13701027|dbj|BAB42322.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246997|dbj|BAB57389.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147740787|gb|ABQ49085.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946228|gb|ABR52164.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721683|dbj|BAF78100.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253724443|gb|EES93172.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728589|gb|EES97318.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257789689|gb|EEV28029.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9781]
 gi|257839277|gb|EEV63751.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9763]
 gi|257844273|gb|EEV68655.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9719]
 gi|257849221|gb|EEV73203.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A9299]
 gi|257850057|gb|EEV74010.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A8115]
 gi|257853794|gb|EEV76753.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A6300]
 gi|257857433|gb|EEV80331.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A6224]
 gi|257863207|gb|EEV85971.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A5937]
 gi|262075132|gb|ACY11105.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282764710|gb|EFC04835.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A8117]
 gi|285816909|gb|ADC37396.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus 04-02981]
 gi|294968018|gb|EFG44046.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A8819]
 gi|297177113|gb|EFH36367.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A8796]
 gi|312829621|emb|CBX34463.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315131018|gb|EFT87002.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727162|gb|EGG63618.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 686

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 216/636 (33%), Positives = 359/636 (56%), Gaps = 24/636 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ Y P+ + D      +++  ++  VTI G +          R   K+ ++     I 
Sbjct: 37  DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154
           +   +     LK      + ITV GK  ++K  I     + +F NSQ        DV   
Sbjct: 96  VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            +E VY +  G+     +  I +AL+ + +  EW+  +L +K    ++    N +H+P+ 
Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208

Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            +D      AR   A+ EL   ++ +  L R +   +  I I+ +    +  +  +PF  
Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFEL 265

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I M A   AG Q+ +M P  IL
Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH E +     ++ + V ++TG++    R+  LE++ +G    +IGTHAL QD + ++
Sbjct: 326 AEQHAESLMALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            + LVI DEQHRFGV QR  L +K    +VL MTATPIPRTL ++  G++D+S I + P 
Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512
           GRKPI T      + D+V+ ++   L +G++AY ICP IE  +   + ++VV  + SL +
Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504

Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           ++  S + ++HG++S  +K+ VM  F N    +L++TTV+EVG++V +A+ ++I +A+ F
Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+ LHQLRGRVGR ++ S C+L+  P  ++    R++++  T DGF ++E DL+ R  G
Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659


>gi|317475642|ref|ZP_07934903.1| ATP-dependent DNA helicase RecG [Bacteroides eggerthii 1_2_48FAA]
 gi|316908212|gb|EFV29905.1| ATP-dependent DNA helicase RecG [Bacteroides eggerthii 1_2_48FAA]
          Length = 698

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 235/673 (34%), Positives = 371/673 (55%), Gaps = 33/673 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   +     F DLL+Y P  ++DR     I EI      + + G I
Sbjct: 14  GVGPQRASVLNKELGIFS-----FHDLLYYFPYKYVDRSRIYYIQEIDGTMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F +  + L   +   ++  V GK      RI
Sbjct: 69  LGFETAGEGRQRRLIAHFSDGTGVVDLIWF-QGIKYLIGKYKVHQEYIVFGKPSVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIE 190
            + HP     +   ++   ++  Y+    +         +E + +  V      LPE + 
Sbjct: 128 NIAHPDIDPASELKLSAMGLQPYYNTTEKMKRSSLNSHAIEKMMKNIVRQLDEPLPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             LL +     + EA   IH P      +    A  RL ++EL   Q+ +L   K  +++
Sbjct: 188 PALLAEHHLMPLTEALMNIHFPVSP---DVLRKAEYRLKFEELFYVQLNILRYAKDRQRK 244

Query: 251 IGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
                   G + +K+         RN+PF  T +Q+  +K+I +D+    +M R+LQGDV
Sbjct: 245 ------YRGYVFEKVGDTFNGFYSRNLPFELTNAQKRVLKEIRRDLGSGRQMNRLLQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVAL++M  A++ G QA +MAP  ILA QHY+ I++      + VE++TG++   
Sbjct: 299 GSGKTLVALMSMLMALDNGYQACMMAPTEILANQHYDTIRELLYGMDVRVELLTGSIKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-AP 421
            R   L  +  G   I+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L  K+T  P
Sbjct: 359 RREAILSGLLTGDVQILIGTHAVIEDTVNFASLGLVVIDEQHRFGVAQRARLWAKSTQPP 418

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H+L+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    +    +   ++  + E
Sbjct: 419 HILVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDSHRVSLYRSVRKQIEE 478

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNG 540
           G++ Y + P I+E ++ + +++ E F  + E F    +  ++G+M   +K++ M  F +G
Sbjct: 479 GRQVYIVYPLIKESEKIDLKNLEEGFLHICEEFPDCKVCKVYGKMKPAEKDAQMQLFVSG 538

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+    L
Sbjct: 539 EAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVTGYKL 598

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIA 659
           ++++  RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  
Sbjct: 599 AEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYV 658

Query: 660 RKDAKHILTQDPD 672
           R  A+ I+ +DP+
Sbjct: 659 RGVAESIVDKDPN 671


>gi|82750831|ref|YP_416572.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus RF122]
 gi|82656362|emb|CAI80780.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
          Length = 686

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 216/636 (33%), Positives = 359/636 (56%), Gaps = 24/636 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ Y P+ + D      +++  ++  VTI G +          R   K+ ++     I 
Sbjct: 37  DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154
           +   +     LK      + ITV GK  ++K  I     + +F NSQ        DV   
Sbjct: 96  VKCIFFNQPYLKKKIELNQTITVKGKWNRIKQEIT---GNRVFFNSQGTQTQESADVQ-- 150

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            +E VY +  G+     +  I +AL+ + +  EW+  +L +K    ++    N +H+P+ 
Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208

Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            +D      AR   A+ EL   ++ +  L R +   +  I I+ +    +  +  +PF  
Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFEL 265

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I M A   AG Q+ +M P  IL
Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH E +     ++ + V ++TG++    R+  LE++ +G    +IGTHAL QD + ++
Sbjct: 326 AEQHAESLIALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            + LVI DEQHRFGV QR  L +K    +VL MTATPIPRTL ++  G++D+S I + P 
Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512
           GRKPI T      + D+V+ ++   L +G++AY ICP IE  +   + ++VV  + SL +
Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504

Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           ++  S + ++HG++S  +K+ VM  F N    +L++TTV+EVG++V +A+ ++I +A+ F
Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+ LHQLRGRVGR ++ S C+L+  P  ++    R++++  T DGF ++E DL+ R  G
Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659


>gi|269218657|ref|ZP_06162511.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269211768|gb|EEZ78108.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 706

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 222/646 (34%), Positives = 342/646 (52%), Gaps = 39/646 (6%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
           R +GK+ +  L+K+       E R + DLL + P     R     ++++ E    T+   
Sbjct: 20  RALGKRTAAALAKL-------ELRTVGDLLSHAPFRLAHRGELMPLADVREGEAATVIAR 72

Query: 76  ISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLK---NVFFEGRKITVTGKIK 130
           ++      +  RR Y   + + DG  E+ L FF +    L         G   + +G + 
Sbjct: 73  VTDSRMRPMNSRRGYILTVRVADGVNELDLTFFGKSPRTLDFHAKRLASGVVASFSGTVS 132

Query: 131 KLKNRIIMVHPHY-IFHNSQDVN-----FPLIEAVYSLPTGLSVDLFKKI--IVEALSRL 182
             +  + + HP Y +  +  DV       P+  A   LP   S  + K +  +++AL+  
Sbjct: 133 SYRGGLQLTHPEYELVEDESDVAKIARPIPIYHATDRLP---SWHIRKAVQSVLQALAPS 189

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            V P+ +  + L     PS  EA   +H P    D EW + AR R+A++E    Q AL  
Sbjct: 190 DV-PDPLPGEYLAAHRLPSKFEAMRALHCPED--DEEWRA-ARLRMAHEEAYVLQAALAQ 245

Query: 243 MRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
              + ++    P  + +G +  +    +P+  T  Q     DI  D+++   M R+LQGD
Sbjct: 246 RSHRARERATAPFPLADGGLLAQFDAGLPYELTSGQREVSADIAADLAKTTPMRRLLQGD 305

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VAL AM   ++ GGQA ++AP  +LA QH   I+         VE++TG++  
Sbjct: 306 VGSGKTVVALRAMLQVLDGGGQAALLAPTEVLAYQHMRTIEALV-GPLAPVELLTGSLTA 364

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A RR+ L R+A GQA +I+GTHALF D +    L L +VDEQHRFGV QR  L       
Sbjct: 365 AQRRRTLARVASGQAGLIVGTHALFSDDVAIPFLGLAVVDEQHRFGVDQRDALAGGGV-- 422

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVV 478
           H L+MTATPIPRT+ ++  GD+D+S + E PAGR  + T ++P ++   ++ V ERL   
Sbjct: 423 HTLVMTATPIPRTIAMSVFGDLDVSVLRELPAGRAEVSTTVVPASKEAWVERVWERLGEE 482

Query: 479 LSEGKKAYWICPQIEEKKES-NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534
           +  G +AY +CP+IE+  E     SV +    L E    +   +  +HGRMS  +K   M
Sbjct: 483 VRGGGRAYVVCPRIEDDDEGLPLASVADVSAELREKSALAGIGVGTMHGRMSSDEKAEAM 542

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           +SF +G   +L++TTV+EVG+DV +A+ ++I +A+ FGL+QLHQLRGR+GRG     C+ 
Sbjct: 543 ESFASGRAPILVSTTVVEVGVDVPEATAMVILDADRFGLSQLHQLRGRIGRGTAPGVCLA 602

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           +        +  RL    +T DGF +AE DL+ R EG++LG  Q+G
Sbjct: 603 VTSAEKGSLALRRLEAFASTTDGFALAELDLQLRSEGDVLGAAQAG 648


>gi|304384760|ref|ZP_07367106.1| DNA helicase RecG [Pediococcus acidilactici DSM 20284]
 gi|304328954|gb|EFL96174.1| DNA helicase RecG [Pediococcus acidilactici DSM 20284]
          Length = 675

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 219/646 (33%), Positives = 367/646 (56%), Gaps = 37/646 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS---FQLQKRR-PYKILLNDGT 98
           DL+ Y+P  + D   + K  E+++++ VT  G ++   +   F   K R  +++L+ + +
Sbjct: 32  DLITYYPFRYEDLAAK-KPQEVADQQKVTFQGIVATAPTIVRFGRHKVRVNFRLLVENSS 90

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             + + FF +    +K      +++ + GK    +  +  +    I    Q      +EA
Sbjct: 91  --VMVTFFNQP--WIKKQLEANQEVAIYGKWDANRQSLTGIK---IITEEQG-----MEA 138

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
           VY     +     ++++  AL+        V+PE     L++K            +H P 
Sbjct: 139 VYPANKHIRQATIQQLVEAALNEYAEQVQDVIPE----ALIEKYRLMHRLAMIKALHFP- 193

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
              D + T  AR    ++E L  Q+ L +++ + + E G  I+ + ++ ++ ++ +PF  
Sbjct: 194 --GDEQITKQARRTAMFEEFLVFQMGLQVVKSRDRVEKGTKIDYQIQLVREFIQQLPFEL 251

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q+    +IL ++     M R+LQGDVGSGKT+VA IAM A + +G QA +MAP  IL
Sbjct: 252 TGAQKRVTNEILANLKSAWHMNRLLQGDVGSGKTVVAAIAMYATITSGHQAALMAPTEIL 311

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH   + K+  N  + + ++ G M +  R + LE +  G+  I+IGTHAL QD +++ 
Sbjct: 312 AEQHANNLIKFFANFDVKIGLLVGGMRKKVRNELLEAVKAGEIDIVIGTHALIQDDVEFK 371

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L I+DEQHRFGV QR KL QK   P +L MTATPIPRTL +T+ GD+D+S I + PA
Sbjct: 372 NLGLAIIDEQHRFGVNQRQKLRQKGANPDILAMTATPIPRTLAITAYGDMDVSIIDQLPA 431

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GRKP+ T  +     D+V+  ++    +G++A+ + P IEE +  + ++ +  +  L + 
Sbjct: 432 GRKPVVTKWLKKGEWDKVLALMEHEFKKGRQAFVVAPLIEESEVMDLQNAMTLYEELKDF 491

Query: 514 FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           F    +I I+HG+M   +K+ +M  FK G    L++TTVIEVG+DV +A++++I++A+ F
Sbjct: 492 FGQRYAIGILHGKMDGAEKDQIMADFKAGKYAGLVSTTVIEVGVDVPNATLMVIQDADRF 551

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRK 629
           GLAQLHQLRGR+GRG++ + C+L+  P   KN+    R+ ++  T +GF IAE DLK R 
Sbjct: 552 GLAQLHQLRGRIGRGQQQAYCLLVADP---KNAVGKQRMQIMVETNNGFRIAEADLKMRG 608

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           +G++ G +QSG+P+F +  P +    L+ A+ +A  I+ Q PD  S
Sbjct: 609 QGDLFGQQQSGVPEFKVGDPVVDLGALQTAQLEAAKIVNQ-PDWQS 653


>gi|298694520|gb|ADI97742.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 686

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 216/636 (33%), Positives = 360/636 (56%), Gaps = 24/636 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ Y P+ + D      +++  ++  VTI G + +        R   K+ ++     I 
Sbjct: 37  DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYRAPVVAFFGRNKSKLTVHLMVNNIA 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154
           +   +     LK      + ITV GK  ++K  I     + +F NSQ        DV   
Sbjct: 96  VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            +E VY +  G+     +  I +AL+ + +  EW+  +L +K    ++    N +H+P+ 
Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208

Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            +D      AR   A+ EL   ++ +  L R +   +  I I+ +    +  +  +PF  
Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFEL 265

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I M A   AG Q+ +M P  IL
Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH E +     ++ + V ++TG++    R+  LE++ +G    +IGTHAL QD + ++
Sbjct: 326 AEQHAESLIALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            + LVI DEQHRFGV QR  L +K    +VL MTATPIPRTL ++  G++D+S I + P 
Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512
           GRKPI T      + D+V+ ++   L +G++AY ICP IE  +   + ++VV  + SL +
Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504

Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           ++  S + ++HG++S  +K+ VM  F N    +L++TTV+EVG++V +A+ ++I +A+ F
Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+ LHQLRGRVGR ++ S C+L+  P  ++    R++++  T DGF ++E DL+ R  G
Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659


>gi|33592698|ref|NP_880342.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
 gi|33572344|emb|CAE41901.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
 gi|332382113|gb|AEE66960.1| ATP-dependent DNA helicase RecG [Bordetella pertussis CS]
          Length = 656

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 227/607 (37%), Positives = 339/607 (55%), Gaps = 24/607 (3%)

Query: 87  RRPYKILLNDGTGEITL--LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
           RR    +L D TGE+ L  L FY   +    V   GR++   G+++       MVHP   
Sbjct: 42  RRQLTAVLADDTGELQLRWLNFYPSQQKQLTV---GRRLRARGEVRGGLFGREMVHPRM- 97

Query: 145 FHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
             +S D   P  +  VY    GL     +K I +AL+R   L + + ++  ++      A
Sbjct: 98  --SSADQPLPASLTPVYPSTDGLPQPTLRKAIGQALARAD-LSDTLPEEARRRYGLAEFA 154

Query: 204 EAFNIIHNP----RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-- 257
            A  ++H P     + +  E   PA  R+ +DELLA Q++L   R   + +   P+    
Sbjct: 155 PAVRLLHAPPPDAAEHELMERIHPAWRRIKFDELLAQQLSLAAARAARRVKRAEPLPASQ 214

Query: 258 -EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            E  +  ++   +PF+ T +Q+  + +I  D++Q   M R+LQGDVGSGKT+VA IA A 
Sbjct: 215 DEDGLVARLYEALPFALTGAQQRVVAEIAADLAQPYPMHRLLQGDVGSGKTVVAAIAAAQ 274

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           A+    Q  +MAP  ILA+QH+  +  + +   + V  ++G++    RR+A   +A G  
Sbjct: 275 AIACEAQVALMAPTEILAEQHFRKLVGWLEPLGVAVAWLSGSLSAKARREAAAAVADGSV 334

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMTATP 430
            +++GT AL QD + + +L L IVDEQHRFGV QRL L++K         PH L M+ATP
Sbjct: 335 QLVVGTQALIQDHVMFQRLGLSIVDEQHRFGVGQRLALSRKGETGRGVIVPHQLNMSATP 394

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +T   D+D+S I E P GR P+ T ++   R +EVI  +     +G++AYW+CP
Sbjct: 395 IPRTLAMTFFADLDVSVIDELPPGRTPVVTKLVADARREEVIGHIAHAARQGRQAYWVCP 454

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +EE +    ++ V+   ++        I ++HGR+   +K  VM +F+ G   LL+ATT
Sbjct: 455 LVEESEALELQTAVDTHEAMRAALPDLRIGLVHGRLPQAEKAEVMRAFREGEIDLLVATT 514

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS+ +  RL 
Sbjct: 515 VIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESICVLLYQAPLSQVARQRLR 574

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            +  T DGF IA  DL+QR  GE LG +QSG+     A  E   ++ E AR+ A  +  +
Sbjct: 575 AMFETSDGFEIARRDLEQRGPGEFLGTRQSGLALLRFADLEADVAIAEQAREAAVWLRAK 634

Query: 670 DPDLTSV 676
            P+  + 
Sbjct: 635 HPEAVAA 641


>gi|229496953|ref|ZP_04390658.1| ATP-dependent DNA helicase RecG [Porphyromonas endodontalis ATCC
           35406]
 gi|229316055|gb|EEN81983.1| ATP-dependent DNA helicase RecG [Porphyromonas endodontalis ATCC
           35406]
          Length = 699

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 232/665 (34%), Positives = 366/665 (55%), Gaps = 21/665 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI-VTITGYI 76
           GVG++ S  L   +         F DLL+  P  ++DR     + E+ +    V + G I
Sbjct: 15  GVGERKSKLLQSELGVYT-----FRDLLYTFPFRYVDRSRILTVRELRDGGGEVQLRGII 69

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
           S +      ++   K    D TG I L++F + ++ +   F  GR+  V G+ K   +  
Sbjct: 70  SDYVLEGFGRKTRLKATFRDDTGSIELVWF-KGSDYISEQFPTGREYIVYGRPKAFGHYY 128

Query: 137 IMVHPHYI-FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP-----EWIE 190
            +VHP       +  V   L+   ++        L  K +  A+ RL  +      E + 
Sbjct: 129 NIVHPEVTPIERASQVAGGLLSVYHTSEKMKRSGLDSKNLRNAIGRLCQIAHLYIRETLP 188

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           +++  +     + +A   IH P+     E    A +RL +DEL   Q++L L +K+ K  
Sbjct: 189 EEVRNRWGLIPLPQALYAIHFPKDDATLE---KAVQRLKFDELFFLQLSLQLTKKERKSH 245

Query: 251 I-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
             G   +  G+       ++P+  T++Q+  +++I  D     +M R+LQGDVG GKTLV
Sbjct: 246 FKGYLFDQVGEYFNSYYSSLPYDLTQAQKRVLREIRHDTQSGLQMNRLLQGDVGCGKTLV 305

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A+ +M  A++ G QA +MAP  ILAQQHYE ++       I V ++TG+ PQ  R   LE
Sbjct: 306 AVFSMLLALDNGWQACMMAPTEILAQQHYETLRGQLAPLGIEVALLTGSTPQRERTTILE 365

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMT 427
            +A G   +++GTHAL ++ +Q+  L L ++DEQHRFGV QR +L +K+    PHVL+M+
Sbjct: 366 DLAQGSLRLLVGTHALLEERVQFAHLALAVIDEQHRFGVVQRARLWEKSLDLLPHVLIMS 425

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+DIS I E P GRKPI T     +  +EV   ++  L  G++ Y 
Sbjct: 426 ATPIPRTLAMTLYGDLDISVIDELPPGRKPISTRHYFDDFSEEVFRLVEQELFAGRQIYV 485

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P IE  ++S+++++   +      F   ++  +HG++   +K+  M+ F +G   +L+
Sbjct: 486 VYPMIEGTEDSDYKNLETGYEQYRYRFGDRNVTWVHGKLKPQEKQQRMEQFVSGKIPILL 545

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +AS+++IENA+ FGLAQLHQLRGRVGRG E S C+LL    +S  +  
Sbjct: 546 STTVIEVGVNVPNASVMVIENADRFGLAQLHQLRGRVGRGAEQSYCLLLSKRTISPVAIK 605

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKH 665
           R+  + ++ DGF IAEEDLK R  G+I G +QSG +    +A+P    ++L  A +  K 
Sbjct: 606 RIEAMCSSNDGFFIAEEDLKLRGAGDIEGTRQSGDLSGLRLAEPSKDLNILYAAAQTVKE 665

Query: 666 ILTQD 670
           IL +D
Sbjct: 666 ILERD 670


>gi|297622549|ref|YP_003703983.1| ATP-dependent DNA helicase RecG [Truepera radiovictrix DSM 17093]
 gi|297163729|gb|ADI13440.1| ATP-dependent DNA helicase RecG [Truepera radiovictrix DSM 17093]
          Length = 762

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 230/650 (35%), Positives = 367/650 (56%), Gaps = 18/650 (2%)

Query: 41  FIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDG-T 98
           + DLLFY+P  + DR   P    + E+   T+ G I+   + + +      +  L D   
Sbjct: 107 YRDLLFYYPKRYEDRRALPHFGALREQESATVVGTITGRKATKSRSGMVVTRAFLEDAHG 166

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIE 157
           G +T ++F +    L+   F G+++ VTGK+K+    + +   H+ I  +S+ ++   I 
Sbjct: 167 GRLTAVWFNQP--WLEKSLFPGQRVIVTGKVKRRGRLVELSVAHFEIDDDSESLSAGRIV 224

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            VY+   GLS    ++ +   L  L V+P+ + + ++++     +  A   +H P     
Sbjct: 225 GVYAATQGLSQAYVRRAVHRLLGALGVIPDHLPRSVVERFGLLPLDAALREVHFPTSE-- 282

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            E  + A  RL +DE L  ++ +LL R      +G    V+    ++   ++PF+ T +Q
Sbjct: 283 -EGLAAALRRLKFDEFLFLELRVLLNRD--TTLLGKRFTVKRSDLERFAASLPFALTGAQ 339

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              + +IL DM+   +M R+LQGDVGSGKT VA  A+  AV+ G QA +MAP  ILA+QH
Sbjct: 340 RRVLDEILGDMAAPKQMARLLQGDVGSGKTAVAAAAIYVAVQNGYQAALMAPTEILARQH 399

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y  + +Y     +  ++  G+     RR+A ER++  Q  + +GTHAL Q+ + +  L L
Sbjct: 400 YLNLIQYLYPLGVECDLFIGSAGSRERREARERLSASQTDLAVGTHALIQEGVTFRNLGL 459

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            ++DE+HRFGV+QR +L   +  P VL+M+ATPIPR+L LT  GD+++S I E P GRK 
Sbjct: 460 AVIDEEHRFGVEQRRRLL--SGNPDVLVMSATPIPRSLALTYYGDLELSVIDELPPGRKG 517

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEHF 514
           ++T ++   R  +V       + +G++ Y + P IEE +    S   S  + F  L    
Sbjct: 518 VQTRLVSDARRRDVYRFAWSEIKKGRQVYLVTPLIEESEAEVMSEIVSATKMFEDLQALM 577

Query: 515 TSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
             +  + ++HG+M+  +K+ VM+ F+     LL++TTVIEVG+D+ +AS++IIENAE FG
Sbjct: 578 PEACRLGLLHGKMTGPEKDEVMERFRRHEFDLLVSTTVIEVGVDIPNASVMIIENAERFG 637

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+QLHQLRGRVGRGE  S CIL+     SK +  RLSV++   DGF+IAE+DL+ R  GE
Sbjct: 638 LSQLHQLRGRVGRGEHESFCILVAG-DRSKRTQHRLSVIEKHTDGFVIAEKDLELRGPGE 696

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           + G +QSGMP  ++        L+E +R+ AK +L  DP L +     +R
Sbjct: 697 LKGTRQSGMPDLVLGDLSKDTELIERSRELAKKMLAADPKLEAPWATRLR 746


>gi|313679752|ref|YP_004057491.1| ATP-dependent DNA helicase recg [Oceanithermus profundus DSM 14977]
 gi|313152467|gb|ADR36318.1| ATP-dependent DNA helicase RecG [Oceanithermus profundus DSM 14977]
          Length = 776

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 226/653 (34%), Positives = 355/653 (54%), Gaps = 18/653 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR---PYKILLNDGTG 99
           DLLFY+P    DR   P  + ++     T+   +   S  +  +++       L +D   
Sbjct: 123 DLLFYYPRRHEDRRTLPGFAALAPGAKATVVATVLSKSQVKTPRKKMLITQARLADDRGH 182

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI-FHNSQDVNFPLIEA 158
           ++T ++F +   M      EG KI VTG+   ++ R+  +   Y      + ++   I  
Sbjct: 183 KLTAVWFNQPWVM--GQLREGEKIVVTGRYT-VRGRVRNLAVEYFEAEGGEQLSTGRIVP 239

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           VYSL   +S    ++ +  AL  +  +P+ + ++L Q+     +  A   IH P   +  
Sbjct: 240 VYSLGERMSQAWLRRSVWRALEAIKEVPDPLPEELRQELGLADLDFALRQIHFPESEQHL 299

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
              + A ERL +DE L  ++ +LL        +G    V  +     L  +PF PT +Q 
Sbjct: 300 ---ARALERLKFDEFLFLELRVLLT-SGASALVGQIFEVREEDLCTFLDALPFEPTAAQR 355

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + +IL DM  + +M R+LQGDVGSGKT VA  A+  A     Q  +MAP  ILA+QH+
Sbjct: 356 RVLDEILADMRSERQMARLLQGDVGSGKTAVAAAALYVAARNQKQGALMAPTEILAKQHF 415

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +Y     + VE++TG+M    +++   RI  G+  +++GTHAL Q  +++ +L L 
Sbjct: 416 ANLTRYLWPLGVRVELLTGSMKAGEKKRVYARIESGEVDVVVGTHALIQKEVRFRELGLA 475

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+HRFGV QR  L Q    P VL+MTATPIPR+L LT  GD+++S I E P GRKP+
Sbjct: 476 VIDEEHRFGVMQRRALLQ--GRPDVLVMTATPIPRSLALTLYGDLEVSVIDEMPPGRKPV 533

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFT 515
           KT ++      +     + ++ EG + + + P IEE      +  R+  E    +     
Sbjct: 534 KTRLLTQRSRKDAYAFARKLIGEGHQVFVVAPLIEESDAEVMAEVRAATELAGEVAAMLP 593

Query: 516 SS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + + ++HGRM   +K+++M+ F+N    +L++TTVIEVG+D+  A+++IIENAE FGLA
Sbjct: 594 EARVEVLHGRMKAEEKDALMERFRNRDFDVLVSTTVIEVGVDIPGANLMIIENAERFGLA 653

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG E + CIL+     S+ +  RL V++ + DGF +AE+DLK R  GE+ 
Sbjct: 654 QLHQLRGRVGRGGEQAYCILIAG-DTSRKTMQRLRVIEKSTDGFYVAEQDLKLRGPGELR 712

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G +QSG+P   +        ++E AR  AK IL  DP LT    Q+++  L L
Sbjct: 713 GTRQSGLPDLQLGDLTSDVEIIESARSTAKRILEADPYLTEPEHQALKRELQL 765


>gi|57651795|ref|YP_186101.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161257|ref|YP_493817.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194933|ref|YP_499733.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221349|ref|YP_001332171.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|258452524|ref|ZP_05700530.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A5948]
 gi|262048125|ref|ZP_06021012.1| ATP-dependent DNA helicase [Staphylococcus aureus D30]
 gi|282920009|ref|ZP_06327738.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9765]
 gi|284024151|ref|ZP_06378549.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848220|ref|ZP_06788967.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9754]
 gi|304381210|ref|ZP_07363863.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|3914612|sp|O50581|RECG_STAA8 RecName: Full=ATP-dependent DNA helicase recG
 gi|81694656|sp|Q5HGK6|RECG_STAAC RecName: Full=ATP-dependent DNA helicase recG
 gi|2826896|dbj|BAA24572.1| RecG [Staphylococcus aureus]
 gi|57285981|gb|AAW38075.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127231|gb|ABD21745.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202491|gb|ABD30301.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374149|dbj|BAF67409.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|257859742|gb|EEV82584.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A5948]
 gi|259163691|gb|EEW48246.1| ATP-dependent DNA helicase [Staphylococcus aureus D30]
 gi|269940719|emb|CBI49100.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282594725|gb|EFB99709.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9765]
 gi|294825020|gb|EFG41442.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9754]
 gi|304340193|gb|EFM06134.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315198464|gb|EFU28793.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140958|gb|EFW32805.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144327|gb|EFW36093.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329313896|gb|AEB88309.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329724736|gb|EGG61241.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329728777|gb|EGG65198.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 686

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 216/636 (33%), Positives = 359/636 (56%), Gaps = 24/636 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ Y P+ + D      +++  ++  VTI G +          R   K+ ++     I 
Sbjct: 37  DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154
           +   +     LK      + ITV GK  ++K  I     + +F NSQ        DV   
Sbjct: 96  VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            +E VY +  G+     +  I +AL+ + +  EW+  +L +K    ++    N +H+P+ 
Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208

Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            +D      AR   A+ EL   ++ +  L R +   +  I I+ +    +  +  +PF  
Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDIDQVKSFIDRLPFEL 265

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I M A   AG Q+ +M P  IL
Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH E +     ++ + V ++TG++    R+  LE++ +G    +IGTHAL QD + ++
Sbjct: 326 AEQHAESLMALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            + LVI DEQHRFGV QR  L +K    +VL MTATPIPRTL ++  G++D+S I + P 
Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512
           GRKPI T      + D+V+ ++   L +G++AY ICP IE  +   + ++VV  + SL +
Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504

Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           ++  S + ++HG++S  +K+ VM  F N    +L++TTV+EVG++V +A+ ++I +A+ F
Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEINVLVSTTVVEVGVNVPNATFMMIYDADRF 564

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+ LHQLRGRVGR ++ S C+L+  P  ++    R++++  T DGF ++E DL+ R  G
Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659


>gi|296270745|ref|YP_003653377.1| ATP-dependent DNA helicase RecG [Thermobispora bispora DSM 43833]
 gi|296093532|gb|ADG89484.1| ATP-dependent DNA helicase RecG [Thermobispora bispora DSM 43833]
          Length = 725

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 232/676 (34%), Positives = 367/676 (54%), Gaps = 49/676 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100
           +LL ++P  +  R     I+ +     VT+ G +S      ++ RR     +++ DGT +
Sbjct: 33  ELLRHYPRRYAQRGELTPIASLRHGEHVTVVGRVSSVMRRPMKNRRGTWLDVVVTDGTDK 92

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN----RIIMVHPHY-IFHNSQDVNFPL 155
           + L FF +     +     G +    GK+         R+ + HP Y +F  S +     
Sbjct: 93  LHLAFFGKGGHAAEQRLTPGTEAMFAGKVDVFTTPRTRRVTLTHPEYELFDESGETAEEF 152

Query: 156 IEA---VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
             A   +Y    GL+    ++ +   L  L V  + +  ++  ++   ++ EA   IH P
Sbjct: 153 AAAPVPIYPSAQGLASWKIRRAVRTVLDVLSV-DDPLPAEVRGRQGLVTLEEALRRIHRP 211

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPF 271
               D    +PAR RLA+DE    Q+ALL  R    +    P    +G +  +  + +PF
Sbjct: 212 ASQADI---APARRRLAFDEAFLLQLALLKRRMTASEWAAKPRPPRDGGLLSEFDKRLPF 268

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q    ++I  D+++ + M R+LQG+VG+GKT+VAL AM   V+AGGQA ++AP  
Sbjct: 269 ELTEGQRKVGEEIAADLARPHPMHRLLQGEVGAGKTVVALRAMLQVVDAGGQAALLAPTE 328

Query: 332 ILAQQHYEFIKKYTQN---------TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +LAQQH+  I     +         T ++  ++TG+M  A RR AL   A GQA I+IGT
Sbjct: 329 VLAQQHHRSITNLLGDLATGGVFGGTSVV--LLTGSMGAAARRNALLAAASGQAGIVIGT 386

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQR--LKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           HAL Q+ +Q+  L LV+VDEQHRFGV+QR  L++  +   PHVL+MTATPIPRT+ +T  
Sbjct: 387 HALLQEQVQFADLGLVVVDEQHRFGVEQRDALRMKAREGRPHVLVMTATPIPRTVAMTVF 446

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQI---- 492
           GD+++S + + P+GR PI T ++P       ++   ER++  ++ G++AY +CP+I    
Sbjct: 447 GDLEVSTLAQLPSGRAPIATHVVPAAEKPHYLERAWERIREEVALGRQAYVVCPRIGDQE 506

Query: 493 ----------EEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540
                     E+++     +V++    L E       I  +HG +   +K++VM +F  G
Sbjct: 507 GGAEEEQATGEDEERRPPLAVLDVARMLGEGPLRDLRIGTLHGALPPEEKDAVMRAFSRG 566

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG+DV +AS+++I +A+ FG++QLHQLRGRVGRG     C+L+   P 
Sbjct: 567 EIDVLVATTVIEVGVDVPNASVMVIMDADRFGVSQLHQLRGRVGRGRLPGLCLLVTEAPA 626

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIA 659
              +  RL  +  T DGF ++  DL+QR+EG+ILG  QSG    L     L D  L+E A
Sbjct: 627 GTPARRRLDAVAATLDGFELSRVDLEQRREGDILGAAQSGRKSSLKLLQLLRDEDLIETA 686

Query: 660 RKDAKHILTQDPDLTS 675
           R +A  +L++DP+L  
Sbjct: 687 RAEAAELLSRDPELAG 702


>gi|212639602|ref|YP_002316122.1| ATP-dependent DNA helicase RecG [Anoxybacillus flavithermus WK1]
 gi|212561082|gb|ACJ34137.1| RecG-like helicase [Anoxybacillus flavithermus WK1]
          Length = 682

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 223/631 (35%), Positives = 354/631 (56%), Gaps = 17/631 (2%)

Query: 44  LLFYHPSSFIDRHYR-PKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           LL++ P  + D  YR   + E   +  +TI G +          R+  ++          
Sbjct: 34  LLYHFPFRYED--YRICALEEAKHDEKITIIGKVYSEPVLTYYSRKKSRLTFRVLVDRFL 91

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
           +         LK        +T+TGK  K +  I +   H      Q      IE VYS 
Sbjct: 92  VTAVCFNQPYLKKKLILHETVTITGKWDKHRQTITVQQLHIGEMKRQKE----IEPVYST 147

Query: 163 PTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
              L+V   ++ I  AL +    + + +  +LLQ     S  +A   IH P      E  
Sbjct: 148 RGDLTVKGMRRFIALALQQYGDAIVDPLPSELLQTYRLISKRDAIRAIHMPLS---HEQL 204

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESA 280
             AR RL Y+E L  Q+ +  ++K  +++  GI         Q  ++++PF  T +Q+  
Sbjct: 205 KQARRRLVYEEFLLFQLKMQALKKYRREQSPGIAHRFSDGQLQSFIQSLPFPLTNAQQRV 264

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           +++I+QD+    RM R+LQGDVGSGKT+VA +A+ A   +G Q  +M P  ILA+QH E 
Sbjct: 265 VREIVQDLKSPYRMNRLLQGDVGSGKTVVAAVALYAVYLSGYQGALMVPTEILAEQHAES 324

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           +        I VE++T ++    R++ LE++A G  H+++GTHAL QD + + KL +VI 
Sbjct: 325 LCTLLAPMGIRVELLTSSVKGKRRKQLLEQLALGDVHVVVGTHALIQDDVNFAKLGVVIT 384

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQHRFGV+QR  L +K  +P VL MTATPIPRTL +T+ G++D+S I E P GRK I+T
Sbjct: 385 DEQHRFGVEQRRILREKGQSPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPKGRKKIET 444

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SI 518
             +  + ++ V + +   +  G +AY ICP IEE ++ + ++ ++    L  ++     I
Sbjct: 445 YWVKHDMLERVFQFMAKQVDAGHQAYVICPLIEESEKLDVQNAIDVHAMLTHYYKGRYRI 504

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++HGR+S  +KE VM +F      +L++TTV+EVG++V +A++++I +A+ FGL+QLHQ
Sbjct: 505 GLMHGRLSSEEKEEVMRAFSANDIHILVSTTVVEVGVNVPNATVMVIYDADRFGLSQLHQ 564

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG+  S CIL+  P  S+    R+ ++  T DGF+++E+DL+ R  G+  G KQ
Sbjct: 565 LRGRVGRGQAQSYCILVADPK-SEAGKERMRIMTETNDGFVLSEKDLELRGPGDFFGTKQ 623

Query: 639 SGMPKFLIAQPELHD-SLLEIARKDAKHILT 668
           SGMP+F +    +HD  +LE+AR+DA+ ++ 
Sbjct: 624 SGMPEFRLGDL-VHDYRILEVARQDAERLIA 653


>gi|161509398|ref|YP_001575057.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|160368207|gb|ABX29178.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
          Length = 686

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 216/636 (33%), Positives = 359/636 (56%), Gaps = 24/636 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ Y P+ + D      +++  ++  VTI G +          R   K+ ++     I 
Sbjct: 37  DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154
           +   +     LK      + ITV GK  ++K  I     + +F NSQ        DV   
Sbjct: 96  VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            +E VY +  G+     +  I +AL+ + +  EW+  +L +K    ++    N +H+P+ 
Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208

Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            +D      AR   A+ EL   ++ +  L R +   +  I I+ +    +  +  +PF  
Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDIDQVKSFIDRLPFEL 265

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I M A   AG Q+ +M P  IL
Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH E +     ++ + V ++TG++    R+  LE++ +G    +IGTHAL QD + ++
Sbjct: 326 AEQHAESLMALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            + LVI DEQHRFGV QR  L +K    +VL MTATPIPRTL ++  G++D+S I + P 
Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512
           GRKPI T      + D+V+ ++   L +G++AY ICP IE  +   + ++VV  + SL +
Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504

Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           ++  S + ++HG++S  +K+ VM  F N    +L++TTV+EVG++V +A+ ++I +A+ F
Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEINVLVSTTVVEVGVNVPNATFMMIYDADRF 564

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+ LHQLRGRVGR ++ S C+L+  P  ++    R++++  T DGF ++E DL+ R  G
Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 624 DFFGVKQSGLPDFLVANLVEGYRMLEVARDEAAELI 659


>gi|302542239|ref|ZP_07294581.1| ATP-dependent DNA helicase RecG [Streptomyces hygroscopicus ATCC
           53653]
 gi|302459857|gb|EFL22950.1| ATP-dependent DNA helicase RecG [Streptomyces himastatinicus ATCC
           53653]
          Length = 737

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 221/686 (32%), Positives = 363/686 (52%), Gaps = 58/686 (8%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYK--ILLNDGTGE 100
           DLL ++P  + +R    +++++  +  VT+   ++     +    R  +  + + DG+G 
Sbjct: 34  DLLHHYPRRYAERGELTRLADLPLDEHVTVVAQVADARVHKFNSGRGQRLEVTITDGSGR 93

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-------------IFHN 147
           + L+FF +     +     G +    GK+    ++  + HP +              F N
Sbjct: 94  LQLVFFGKGVHKPRAELLPGSRAMFAGKVSVFNHKRQLAHPEFKLLRADSGSDAVEAFAN 153

Query: 148 SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207
                +P  + + S     +VD       +  + L  L + + + L + +   ++  A  
Sbjct: 154 QLLPLYPACKQMESWQIQQAVDTVLGPAGQEDTVLAGLIDPLPESLREGRGLATLPGALR 213

Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKIL 266
            IH PR   D    + AR+RL +DE    Q+AL   R+        P   V+G +     
Sbjct: 214 RIHRPRTKADI---ADARDRLKWDEAFVLQVALARRRQADATAPAAPRRPVDGGLLDAFD 270

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             +PF+ T  Q+    +I  D++  + M R+LQG+VGSGKT+VAL AM   V+AGGQA +
Sbjct: 271 ARLPFTLTDGQKRVSAEIFADLATDHPMHRLLQGEVGSGKTMVALRAMLGVVDAGGQAAM 330

Query: 327 MAPIGILAQQHYEFIKKYT-------------QNTQIIVEIITGNMPQAHRRKALERIAH 373
           +AP  +LAQQH+  I +               Q T+++  ++TG+M  A RR+AL  +  
Sbjct: 331 LAPTEVLAQQHHRSITEMMGELAEGGMLGGAEQGTKVV--LLTGSMGAAARRQALLDLVT 388

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIP 432
           G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR  L  K    PH+L+MTATPIP
Sbjct: 389 GEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIP 448

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWI 488
           RT+ +T  GD++ S + + PAGR PI + ++P       +    ER++  ++ G +AY +
Sbjct: 449 RTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKDKPHFLARTWERVREEVAGGHQAYVV 508

Query: 489 CPQI----EEKKESNFRSVVERFN--------SLHEHFTSS------IAIIHGRMSDIDK 530
           CP+I    +E K +  +S  +            + +   +       + ++HGRM+   K
Sbjct: 509 CPRIGDDEDEAKAAKEKSAEDEAEKRPPLAVLDVADKLAAGPLRDLRVEVLHGRMAPEAK 568

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG    
Sbjct: 569 DEVMRRFAAGGVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPG 628

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+L+   P +  +  RL  +  T DGF ++  DL+QR+EG++LG  QSG+   L     
Sbjct: 629 LCLLVTEMPEASPARGRLGAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRVLAV 688

Query: 651 LHD-SLLEIARKDAKHILTQDPDLTS 675
           + D  ++  AR++A  I+T DP+LT 
Sbjct: 689 IDDEEVIAAAREEATAIVTADPELTG 714


>gi|167837799|ref|ZP_02464682.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis MSMB43]
          Length = 447

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 189/425 (44%), Positives = 271/425 (63%), Gaps = 10/425 (2%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           ++ ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++A
Sbjct: 7   LSARLYAALPFTLTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDA 66

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G QA +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++I
Sbjct: 67  GYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKDKRAALEAAALGTAQLVI 126

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPI 431
           GTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPI
Sbjct: 127 GTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPI 186

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP 
Sbjct: 187 PRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPL 246

Query: 492 IEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTV
Sbjct: 247 IEESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTV 306

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           IEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  
Sbjct: 307 IEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKT 366

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++ + 
Sbjct: 367 MRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIARH 426

Query: 671 PDLTS 675
           PD+ +
Sbjct: 427 PDIVA 431


>gi|21223922|ref|NP_629701.1| ATP-dependent DNA helicase RecG [Streptomyces coelicolor A3(2)]
 gi|256784979|ref|ZP_05523410.1| ATP-dependent DNA helicase RecG [Streptomyces lividans TK24]
 gi|289768871|ref|ZP_06528249.1| ATP-dependent DNA helicase RecG [Streptomyces lividans TK24]
 gi|4007725|emb|CAA22409.1| putative ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
 gi|289699070|gb|EFD66499.1| ATP-dependent DNA helicase RecG [Streptomyces lividans TK24]
          Length = 742

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 234/715 (32%), Positives = 371/715 (51%), Gaps = 63/715 (8%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ-------HSSFQLQKRRPYKILLN 95
           DLL ++P  + +R     ++++  +  VT+   ++         S     K +  ++ + 
Sbjct: 34  DLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASSKAPRGKGQRLEVTIT 93

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL 155
           DG+G + L+FF             G +    GK+     R+ + HP Y      D     
Sbjct: 94  DGSGRLQLVFFGNGVHKPHKELLPGTRAMFAGKVSVFNRRLQLAHPAYELLRGGDDEGEA 153

Query: 156 IEAVYSLPTGL------SVDLFKKIIVEAL-SRLPVLPEWIE---KDLLQKKSFPSIAEA 205
            E+V S    L      +  L    + +A+ + LP   E ++     L + +   S+ EA
Sbjct: 154 AESVESWAGALIPLYPATAKLESWKLAKAIQTVLPSAQEAVDPLPGSLREGRGLVSLPEA 213

Query: 206 FNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIAQ 263
              IH P    D E    AR RL +DE    Q+AL   R    +   +P     +G +  
Sbjct: 214 LLKIHRPHTKADIE---DARARLKWDEAFVLQVALARRRHAESQLPAVPRKPGADGLLTA 270

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
              R +PF+ T  Q    ++I  D++  + M R+LQG+VGSGKTLVAL AM A V++GGQ
Sbjct: 271 FDDR-LPFTLTDGQRKVSREIFDDLATDHPMHRLLQGEVGSGKTLVALRAMLAVVDSGGQ 329

Query: 324 AVIMAPIGILAQQHY----EFIKKYTQNTQI-------IVEIITGNMPQAHRRKALERIA 372
           AV++AP  +LAQQH+    E + +  +   +        V ++TG+M  A RR AL  +A
Sbjct: 330 AVMLAPTEVLAQQHHRSVVEMMGELAEGGMLGGAEHATKVVLLTGSMGAAARRHALLDLA 389

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPI 431
            G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR  L  K    PH+L+MTATPI
Sbjct: 390 TGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPI 449

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYW 487
           PRT+ +T  GD++ S + + PAGR PI + ++P       +    ER++  +S G +AY 
Sbjct: 450 PRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKPHFLARAWERVREEVSNGHQAYV 509

Query: 488 ICPQIEEKKESNFRSVVERFN---------------SLHEHFTS------SIAIIHGRMS 526
           +CP+I ++ +   +   +                   + E           + ++HGRM 
Sbjct: 510 VCPRIGDEDDDPGKGAKQSKQPPEGDADKRPPLAVLDVAEQLARGPLQGLGVEVLHGRMQ 569

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DK++VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG
Sbjct: 570 PDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRG 629

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
                C+L+   P +  +  RL+ + +T DGF ++  DL+QR+EG++LG  QSG    L 
Sbjct: 630 SAPGLCLLVSEMPEASAARQRLNAVASTRDGFELSRIDLEQRREGDVLGQAQSGARTSLR 689

Query: 647 AQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
               + D  ++  AR++A  ++  DP+LT + G  +R  L      E  Q++  G
Sbjct: 690 VLAVIEDEEIIAEARQEAAAVVAADPELTGLPG--LRTALEALLDEEREQYLEKG 742


>gi|33597517|ref|NP_885160.1| ATP-dependent DNA helicase [Bordetella parapertussis 12822]
 gi|33573945|emb|CAE38263.1| ATP-dependent DNA helicase [Bordetella parapertussis]
          Length = 663

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 233/651 (35%), Positives = 354/651 (54%), Gaps = 25/651 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           D + + P  + D      +S +       + G I + S    + RR    +L D +GE+ 
Sbjct: 6   DFVLHLPLRYEDETRVTPVSSLRPGFAAQVEGEILR-SEVLYRPRRQLTAVLADDSGELQ 64

Query: 103 L--LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAV 159
           L  L FY   +    V   GR++   G+++       MVHP     +S D   P  +  V
Sbjct: 65  LRWLNFYPSQQKQLTV---GRRLRARGEVRGGLFGREMVHPRM---SSADQPLPASLTPV 118

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP----RKA 215
           Y    GL     +K I +AL+R   L + + ++  ++      A A  ++H P     + 
Sbjct: 119 YPSTDGLPQPTLRKAIGQALARAD-LSDTLPEEARRRYGLAEFAPAVRLLHAPPPDAAEH 177

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV---EGKIAQKILRNIPFS 272
           +  E   PA  R+ +DELLA Q++L   R   + +   P+     E  +  ++   +PF+
Sbjct: 178 ELMERIHPAWRRIKFDELLAQQLSLAAARAARRVKRAEPLPASQDEDGLVARLYEALPFA 237

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T +Q+  + +I  D++Q   M R+LQGDVGSGKT+VA IA A A+    Q  +MAP  I
Sbjct: 238 LTGAQQRVVAEIAADLAQPYPMHRLLQGDVGSGKTVVAAIAAAQAIACEAQVALMAPTEI 297

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QH+  +  + +   + V  ++G++    RR+A   +A G   +++GT AL QD + +
Sbjct: 298 LAEQHFRKLVGWLEPLGVAVAWLSGSLSAKARREAAAAVADGSVQLVVGTQALIQDHVMF 357

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMTATPIPRTLVLTSLGDIDIS 446
            +L L IVDEQHRFGV QRL L++K         PH L M+ATPIPRTL +T   D+D+S
Sbjct: 358 QRLGLSIVDEQHRFGVGQRLALSRKGETGRGVIVPHQLNMSATPIPRTLAMTFFADLDVS 417

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I E P GR P+ T ++   R +EVI  +     +G++AYW+CP +EE +    ++ V+ 
Sbjct: 418 VIDELPPGRTPVVTKLVADARREEVIGHIAHAARQGRQAYWVCPLVEESEALELQTAVDT 477

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             ++        I ++HGR+   +K  VM +F+ G   LL+ATTVIEVG+DV +AS+++I
Sbjct: 478 HEAMRAALPDLRIGLVHGRLPQAEKAEVMRAFREGEIDLLVATTVIEVGVDVPNASLMVI 537

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           E+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS+ +  RL  +  T DGF IA  DL
Sbjct: 538 EHAERFGLAQLHQLRGRVGRGTAESICVLLYQAPLSQVARQRLRAMFETSDGFEIARRDL 597

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           +QR  GE LG +QSG+     A  E   ++ E AR+ A  +  + P+  + 
Sbjct: 598 EQRGPGEFLGTRQSGLALLRFADLEADVAIAEQAREAAVWLRAKHPEAVAA 648


>gi|33601915|ref|NP_889475.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50]
 gi|33576352|emb|CAE33431.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50]
          Length = 663

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 234/651 (35%), Positives = 355/651 (54%), Gaps = 25/651 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           D + + P  + D      +S +       + G I + S    + RR    +L D +GE+ 
Sbjct: 6   DFVLHLPLRYEDETRVTPVSSLRPGFAAQVEGEILR-SEVLYRPRRQLTAVLADDSGELQ 64

Query: 103 L--LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAV 159
           L  L FY   +    V   GR++   G+++       MVHP     +S D   P  +  V
Sbjct: 65  LRWLNFYPSQQKQLTV---GRRLRARGEVRGGLFGREMVHPRM---SSADQPLPASLTPV 118

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP----RKA 215
           Y    GL     +K I +AL+R   L + + ++  ++      A A  ++H P     + 
Sbjct: 119 YPSTDGLPQPTLRKAIGQALARAD-LSDTLPEEARRRYGLAEFAPAVRLLHAPPPDAAEH 177

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV---EGKIAQKILRNIPFS 272
           +  E   PA  R+ +DELLA Q++L   R   + +   P+     E  +  ++   +PF+
Sbjct: 178 ELMERIHPAWRRIKFDELLAQQLSLAAARAARRVKRAEPLPASQDEDGLVARLYEALPFA 237

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T +Q+  + +I  D++Q   M R+LQGDVGSGKT+VA IA A A+  G Q  +MAP  I
Sbjct: 238 LTGAQQRVVAEIAADLAQPYPMHRLLQGDVGSGKTVVAAIAAAQAIACGAQVALMAPTEI 297

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QH+  +  + +   + V  ++G++    RR+A   +A G   +++GT AL QD + +
Sbjct: 298 LAEQHFRKLVGWLEPLGVAVAWLSGSLSAKARREAAAAVADGSVQLVVGTQALIQDHVMF 357

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMTATPIPRTLVLTSLGDIDIS 446
            +L L IVDEQHRFGV QRL L++K         PH L M+ATPIPRTL +T   D+D+S
Sbjct: 358 QRLGLSIVDEQHRFGVGQRLALSRKGETGRGVIVPHQLNMSATPIPRTLAMTFFADLDVS 417

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I E P GR P+ T ++   R +EVI  +     +G++AYW+CP +EE +    ++ V+ 
Sbjct: 418 VIDELPPGRTPVVTKLVADARREEVIGHIAHAARQGRQAYWVCPLVEESEALELQTAVDT 477

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             ++        I ++HGR+   +K  VM +F+ G   LL+ATTVIEVG+DV +AS+++I
Sbjct: 478 HEAMRAALPDLRIGLVHGRLPQAEKAEVMRAFREGEIDLLVATTVIEVGVDVPNASLMVI 537

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           E+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS+ +  RL  +  T DGF IA  DL
Sbjct: 538 EHAERFGLAQLHQLRGRVGRGTAESICVLLYQAPLSQVARQRLRAMFETSDGFEIARRDL 597

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           +QR  GE LG +QSG+     A  E   ++ E AR+ A  +  + P+  + 
Sbjct: 598 EQRGPGEFLGTRQSGLALLRFADLEADVAIAEQAREAAVWLRAKHPEAVAA 648


>gi|315640125|ref|ZP_07895247.1| DNA helicase RecG [Enterococcus italicus DSM 15952]
 gi|315484102|gb|EFU74576.1| DNA helicase RecG [Enterococcus italicus DSM 15952]
          Length = 674

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 229/664 (34%), Positives = 369/664 (55%), Gaps = 27/664 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++   GVGKK    L+++             LL Y+P  + D   R +++EI ++  VT+
Sbjct: 4   VAVLAGVGKKRQQALAEL------GIESIESLLTYYPFRYEDVQQR-QLAEIQDQEKVTL 56

Query: 73  TGYI---SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            G +   +  S F  +K R    ++ D   ++  + F+ +   LK+      +I V GK 
Sbjct: 57  KGTVVSPAVMSRFGYKKTRLQFRMMQDR--DVFQVSFFNQP-YLKDKIILSEEIVVYGKW 113

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
              +  +  +    IF + +  +F     VY +   +     + +I +A ++    + E 
Sbjct: 114 DAKRKALTGMK---IFGSGKQDSFA---PVYHVSKKIRQATLQDLIKQAFAQFGEQIEEI 167

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   L+ K       +A   +H P    D +    A+ R+ ++E    Q+ L  +++  K
Sbjct: 168 LPVQLVDKYRLMERKQAIYAMHFP---DDMDTYRQAKRRVVFEEFFLFQMKLQGLKQAEK 224

Query: 249 KEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
            E+ G+ ++ + K  +  ++ +PF  T +Q+    +I  D+     M R+LQGDVGSGKT
Sbjct: 225 AEVNGLCLSYDAKQLKAFIQKLPFELTDAQKRVTNEICADLKSPKHMQRLLQGDVGSGKT 284

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IA+ A + AG Q  +M P  ILAQQH E          + V ++TG+     R+  
Sbjct: 285 IVAAIALYATITAGFQGALMVPTEILAQQHMESFVSLFAAMDVTVALLTGSTKTKERKHI 344

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  I  G   I+IGTHAL Q+ + + +L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 345 LAGIKDGSIDILIGTHALIQEDVDFAQLGLVITDEQHRFGVNQRKVLREKGWKPDVLFMT 404

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E P GR PI+T  +   ++D V+   K  L++G + Y 
Sbjct: 405 ATPIPRTLAITAYGEMDVSLIDELPKGRIPIETRWVRPPQLDTVLHWAKKELAKGHQMYV 464

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE +  + ++  + +  L E F   +++ ++HG+M   +KE VM+ FK    ++L
Sbjct: 465 ICPLIEESEMLDVQNAQKIYEELKEFFEPINAVGLLHGKMKPSEKEQVMEQFKENQTQIL 524

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVG++V +A+++II +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++   
Sbjct: 525 VSTTVIEVGVNVPNATLMIIIDADRFGLAQLHQLRGRVGRGVSASYCILVANPK-NEVGK 583

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ V+  T +GF+++E DL  R  GEI G +QSG+P+FLIA    H ++LE+A+++A+ 
Sbjct: 584 ERMKVMTETTNGFVVSERDLALRGPGEIFGQRQSGLPEFLIADIVEHATVLEVAKQEAES 643

Query: 666 ILTQ 669
           I  Q
Sbjct: 644 IWQQ 647


>gi|116617652|ref|YP_818023.1| ATP-dependent DNA helicase RecG [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096499|gb|ABJ61650.1| ATP-dependent DNA helicase RecG [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 676

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 200/467 (42%), Positives = 290/467 (62%), Gaps = 8/467 (1%)

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
           I N     D E    AR  +A++E    Q+ L L++   K   G  IN + K   K    
Sbjct: 187 IENMHFPADMEQAKLARRSIAFEEFFIFQMRLQLLKLADKNFSGEGINYDSKALNKFEAG 246

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF+ T +Q+  + +IL D  +   M R+LQGDVGSGKT+VA IA+ A V AG QA +MA
Sbjct: 247 LPFTLTGAQQKVVSEILTDQKRPVHMNRLLQGDVGSGKTVVAAIALYAVVTAGMQAALMA 306

Query: 329 PIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           P  ILAQQH   +    + +   I +E++T  M  A RR+ LE +A G   I++GTHAL 
Sbjct: 307 PTEILAQQHAINLALMFEKSGVDIRIELLTSGMKAAARRQLLEDLADGTIDILVGTHALL 366

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           Q  + ++ L L ++DEQHRFGV QR KL +    P +L MTATPIPRTL +T+ G++D+S
Sbjct: 367 QPDVMFHHLGLAVIDEQHRFGVNQRAKLRENGVNPDILAMTATPIPRTLSITTYGEMDVS 426

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I + P GRK I+T  I  N++D  I  LK  LSEG +AY + P IEE +  + ++    
Sbjct: 427 IIDQLPNGRKQIQTRKISHNQLDSAINFLKQQLSEGAQAYVVTPLIEESEALDVQNAQAM 486

Query: 507 FNSLH-EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           + +L  E    +I ++HGR+S+ +K+++M  FK    ++L+ATTVIEVG+DV +ASI++I
Sbjct: 487 YEALQLELPNDTIGLLHGRLSNDEKKALMADFKRNKIQVLVATTVIEVGVDVPNASIMLI 546

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEE 623
            +A+ FGLAQLHQLRGRVGRG   S  IL+  P   K  Y   RL  +  T DGF++A++
Sbjct: 547 MDADRFGLAQLHQLRGRVGRGTRQSYTILVADP---KTDYGRARLDAMVETTDGFILAQK 603

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           DL+ R  G+ILG KQSG+P+F +  P     ++E+A+++A  +++ D
Sbjct: 604 DLELRGSGDILGTKQSGVPEFAVGDPIKDLKMMEVAQQEAISMVSTD 650


>gi|323442318|gb|EGA99948.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus O46]
          Length = 686

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 216/636 (33%), Positives = 359/636 (56%), Gaps = 24/636 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ Y P+ + D      +++  ++  VTI G +          R   K+ ++     I 
Sbjct: 37  DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154
           +   +     LK      + ITV GK  ++K  I     + +F NSQ        DV   
Sbjct: 96  VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            +E VY +  G+     +  I +AL+ + +  EW+  +L +K    ++    N +H+P+ 
Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208

Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            +D      AR   A+ EL   ++ +  L R +   +  I I+ +    +  +  +PF  
Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFEL 265

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I M A   AG Q+ +M P  IL
Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH E +     ++ + V ++TG++    R+  LE++ +G    +IGTHAL QD + ++
Sbjct: 326 AEQHAESLIALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            + LVI DEQHRFGV QR  L +K    +VL MTATPIPRTL ++  G++D+S I + P 
Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512
           GRKPI T      + D+V+ ++   L +G++AY ICP IE  +   + ++VV  + SL +
Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504

Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           ++  S + ++HG++S  +K+ VM  F N    +L++TTV+EVG++V +A+ ++I +A+ F
Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+ LHQLRGRVGR ++ S C+L+  P  ++    R++++  T DGF ++E DL+ R  G
Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659


>gi|258423932|ref|ZP_05686817.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9635]
 gi|257845961|gb|EEV69990.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9635]
          Length = 686

 Score =  360 bits (924), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 214/633 (33%), Positives = 357/633 (56%), Gaps = 18/633 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ Y P+ + D      +++  ++  VTI G +          R   K+ ++     I 
Sbjct: 37  DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-----LIE 157
           +   +     LK      + ITV GK  ++K  I     + +F NSQ           +E
Sbjct: 96  VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADIQLE 152

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            VY +  G+     +  I +AL+ + +  EW+  +L +K    ++    N +H+P+  +D
Sbjct: 153 PVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKSKED 211

Query: 218 FEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
                 AR   A+ EL   ++ +  L R +   +  I I+ +    +  +  +PF  T++
Sbjct: 212 L---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFELTEA 268

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I M A   AG Q+ +M P  ILA+Q
Sbjct: 269 QKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQ 328

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H E +     ++ + V ++TG++    R+  LE++ +G    +IGTHAL QD + ++ + 
Sbjct: 329 HAESLIALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVG 387

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV QR  L +K    +VL MTATPIPRTL ++  G++D+S I + P GRK
Sbjct: 388 LVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRK 447

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHF- 514
           PI T      + D+V+ ++   L +G++AY ICP IE  +   + ++VV  + SL +++ 
Sbjct: 448 PIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYG 507

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            S + ++HG++S  +K+ VM  F N    +L++TTV+EVG++V +A+ ++I +A+ FGL+
Sbjct: 508 VSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLS 567

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
            LHQLRGRVGR ++ S C+L+  P  ++    R++++  T DGF ++E DL+ R  G+  
Sbjct: 568 TLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPGDFF 626

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 627 GVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659


>gi|116492606|ref|YP_804341.1| ATP-dependent DNA helicase RecG [Pediococcus pentosaceus ATCC
           25745]
 gi|116102756|gb|ABJ67899.1| ATP-dependent DNA helicase RecG [Pediococcus pentosaceus ATCC
           25745]
          Length = 675

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 222/654 (33%), Positives = 369/654 (56%), Gaps = 32/654 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS---FQLQKRR-PYKILLNDGT 98
           DL+ Y+P  + D   +   + + +++ VT  G ++   +   F  QK R  +++L+  G 
Sbjct: 32  DLITYYPFRYEDLAAKEPQNVVDQQK-VTFQGVVATQPTVARFGRQKVRVNFRLLI--GN 88

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             + + FF +    +KN      +I V GK     NR  +     I    ++ N   ++ 
Sbjct: 89  ESVMVTFFNQP--WIKNQINADEEIAVYGKWDA--NRRSLTGIKII---DEEAN---LQP 138

Query: 159 VYSLPTGLSVDLFKKIIVEALSRL-----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
           VY     +     +++  +A+++       V+PE    +L+ K            +H P 
Sbjct: 139 VYPANKHIRQATIQQLATDAINQYQEQIQDVIPE----ELITKYRLLHRLAMVQALHFP- 193

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
              D + T  AR    ++E L  Q+ L L++ + + E G  I  + ++ ++ ++ +PF  
Sbjct: 194 --ADDQKTRDARRTAMFEEFLTFQMGLQLVKSRERIENGTAIKYQIQLVREFIQQLPFEL 251

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q+    +IL ++     M R+LQGDVGSGKT+VA IAM A + AG QA +MAP  IL
Sbjct: 252 TDAQKRVTNEILANLKSPTHMNRLLQGDVGSGKTVVAAIAMYATLTAGMQATLMAPTEIL 311

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH   + ++ +   + + ++ G + +  R + L  I +G+  I++GTHA+ Q+ +Q+ 
Sbjct: 312 AEQHANNLSRFFEKLDVKIALLVGGIRKKIRDEMLAEIKNGEIDIVVGTHAIIQEDVQFK 371

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L I+DEQHRFGV QR  L +K  AP +L MTATPIPRTL +T+ GD+D+S I + PA
Sbjct: 372 NLGLGIIDEQHRFGVHQRQLLREKGAAPDILAMTATPIPRTLAITTYGDMDVSIIDQAPA 431

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GRKPI T  +     ++V+  +    + G++A+ + P IEE +  + ++ +E +  L E 
Sbjct: 432 GRKPIITKWVKRGEWEKVLAFMTKEFANGRQAFIVTPLIEESEAMDLQNAMELYQELCEF 491

Query: 514 FTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           F     IAI+HG+M    K+ +M  FK G    L++TTVIEVG+DV +A++++I++A+ F
Sbjct: 492 FGEKYPIAILHGKMDGAQKDQIMADFKEGKYMGLVSTTVIEVGVDVPNATLMVIQDADRF 551

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GLAQLHQLRGRVGRG+  + CIL+  P  ++    R+ ++ +T DGF I+E DLK R +G
Sbjct: 552 GLAQLHQLRGRVGRGQYQAYCILVADPK-NEVGKQRMQIMVDTNDGFEISEADLKMRGQG 610

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           ++ G +QSG+P+F +  P +    L+ A+ DA  I++Q       R Q++R+ L
Sbjct: 611 DLFGKQQSGVPEFKVGDPVVDLGALQTAQIDAAKIVSQPAWDQDPRYQNLRLYL 664


>gi|227510455|ref|ZP_03940504.1| DNA helicase RecG [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190107|gb|EEI70174.1| DNA helicase RecG [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 691

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 236/680 (34%), Positives = 375/680 (55%), Gaps = 45/680 (6%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           L  L   ++  +GVG K  + L+K+ IN  N       DLL Y P  + D   +   + I
Sbjct: 16  LTSLNDSVAVLKGVGTKRLVALNKLGINTIN-------DLLTYFPRRYDDLSIKDLSNAI 68

Query: 65  SEERIVTITGYI---SQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
             ++ VT+ G +      + F  +K R  +++ +ND     T+ FF +    LK      
Sbjct: 69  DGQK-VTVKGMVIAPPTLTYFGRKKSRLVFRLKINDNI--YTVSFFNQ--PWLKKEVNPN 123

Query: 121 RKITVTGKIKKLKN-----RIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175
            +I V G   + +N     +I+       F +    N  + +A       ++ D++   +
Sbjct: 124 DEIIVFGTYNRSRNQIQGMKILTDQSSNSFDSIYPANKEVKQATIKSLIKMAYDMYHTQL 183

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
                   V+P+ +     + +SFP      +   +P+ A+    T+   E   +   L 
Sbjct: 184 TN------VIPDQLRAKY-RLESFPDTIRNIHFPESPQAAQRAFRTAKFMEFFLF--ALK 234

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            QI   L     K +    I+ +  + +K  +++PF  T +Q+  +++IL D+++  +M 
Sbjct: 235 VQI---LKESHRKTDPHAQIHYQQSLLEKFQKSLPFDLTPAQQKVVREILADLNRPIQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT+VA +A+ A + A  QA IMAP  ILA+QH     K      + + ++
Sbjct: 292 RLLQGDVGSGKTVVAAMAILATISAHKQAAIMAPTEILAEQHANNFAKMFDGLDVNIALL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG+   A RR  L  I  G+  +I+GTHALFQ+ +QY  L L ++DEQHRFGV QR  L 
Sbjct: 352 TGDTSAAARRAMLPSIQSGEVDLIVGTHALFQNDVQYDNLGLAVIDEQHRFGVNQRQALR 411

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK T+ ++L MTATPIPRTL +T  GD+D+S I + P+GRKPIKT  I   + +  I  +
Sbjct: 412 QKGTSTNMLAMTATPIPRTLAITMYGDMDVSIINQLPSGRKPIKTTWITSAKTNSAIRFV 471

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVV---ERFNSLHE-HFTSSIAIIHGRMSDIDKE 531
           K  L  G + Y + P IEE +  + ++ V   ERF ++ E  F   + ++HG+MS+ +K+
Sbjct: 472 KKQLDNGNQVYVVTPLIEESEAVDMKNAVAIFERFKTIFEPQF--KVGLLHGQMSNQEKD 529

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             M SFKN   ++L+ATTVIEVG+DV +A+ ++I +A+HFGLAQLHQLRGRVGRG   S 
Sbjct: 530 DTMVSFKNNQFQVLVATTVIEVGVDVANANTMLIFDADHFGLAQLHQLRGRVGRGSTQSY 589

Query: 592 CILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           C+L+  P   KN     R+  + ++ +GF ++++DL+ R +G+I G KQSGMP F +A P
Sbjct: 590 CVLIADP---KNELGKERMKAVASSTNGFFLSQKDLELRGQGDITGAKQSGMPDFKVADP 646

Query: 650 ELHDSLLEIARKDAKHILTQ 669
               ++L +A ++A++I  +
Sbjct: 647 VGDLNILTVANQEAQNITAE 666


>gi|315038623|ref|YP_004032191.1| ATP-dependent DNA helicase RecG [Lactobacillus amylovorus GRL 1112]
 gi|312276756|gb|ADQ59396.1| ATP-dependent DNA helicase RecG [Lactobacillus amylovorus GRL 1112]
          Length = 678

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 224/685 (32%), Positives = 378/685 (55%), Gaps = 26/685 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +       + G+       DLLFY P  + +    P + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTA------ADLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56

Query: 67  ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + V + G ++     S F  +K R  +KI ++    +I ++ F+ +   LK+    G++
Sbjct: 57  GQKVMLKGIVATEPFVSGFGYKKSRLSFKIRIDH---DIVMVNFFNQP-WLKSKIKIGQE 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181
           + + GK    +  +      + F  +++ N   +  +Y +   +       +I  A+ S 
Sbjct: 113 VAIYGKYNVARQSL----SAFKFVAAKE-NDSGMAPIYPVNRHVKQKKLINLINLAIDSF 167

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           L  + + + K++++K       E    +H+P+   D E    A+    + E    ++ L 
Sbjct: 168 LDQVQDIVPKEIMEKYRLLHDQEIIQKMHHPKNGHDAEL---AKRSAIFREFFIFELQLA 224

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L+     K+ G P   + K    + +++PF  +  Q+  + +I  DM    +M R+LQGD
Sbjct: 225 LLANHDGKQQGYPKKYDLKEIANLTKSLPFELSDDQKKVVNEIFADMHSDGQMRRLLQGD 284

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   + V ++TGN   
Sbjct: 285 VGSGKTIVAVYAIFAAISAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKT 344

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR+    +  G  +++IGTHAL Q ++ + KL LVI+DEQHRFGV QR  L  K   P
Sbjct: 345 LERREIYCELTDGTINVVIGTHALIQKNVIFKKLGLVIIDEQHRFGVGQRQALINKGDNP 404

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +     +++ +V + +   L +
Sbjct: 405 DILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISAWKTSSQMKDVYKLMYEQLDQ 464

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           G + Y + P I E +  + ++  E    L H+    ++ ++HG+M    K+ +M +F +G
Sbjct: 465 GFQIYAVTPLITESETLDLKNAEELHEKLSHDFPDQNVVLLHGQMPGAKKDEIMSAFASG 524

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S CI +  P  
Sbjct: 525 EINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCIFIADPK- 583

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           + +   R+ ++  T +GF +AEEDLK R EG++ G  QSG+P+F +     + + L +A+
Sbjct: 584 TDSGKARMKIIAATNNGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVAQ 643

Query: 661 KDAKHILTQDPDLTSVRGQSIRILL 685
           K A+ ++  DP+LTS    S++ +L
Sbjct: 644 KVARELVKADPELTSPEHNSLKQVL 668


>gi|86133709|ref|ZP_01052291.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85820572|gb|EAQ41719.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 698

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 237/679 (34%), Positives = 370/679 (54%), Gaps = 29/679 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS-EERIV 70
           P++   G+  + +  L   +     N     DLL + P  +ID+     I E+      V
Sbjct: 6   PITYISGISVQRATLLYSELGIKTCN-----DLLNFFPFRYIDKTKFHAIKELQPNSSEV 60

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G I    S   ++         D TG + L++F +  + +K+         V GK+ 
Sbjct: 61  QVVGKIINVKSVAQKRGSRLVATFQDATGSMELVWF-KGQKWIKDSLKTDVPYVVYGKLN 119

Query: 131 KLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLP-TGLSVDLFKKIIVEALSRL-P 183
                  + HP     +      Q    P+  +   L  +G+S  + +  I + L +   
Sbjct: 120 HYNGSFSIPHPEMELVSEYKKKLQTKMQPIYHSTEKLTNSGVSNKMIRSYIQKLLQQFYD 179

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + E +  +++         +A   +H P+  ++    + A+ RL ++EL    I L L+
Sbjct: 180 GIQESLSTEIINDFKLMKKRDALLNVHFPKSQENL---AKAQNRLKFEELFF--IQLQLV 234

Query: 244 RKQFKKEIGIP----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           RK+   +  I      NV     Q     +PF+ T +Q+  +K+I +D++    M R+LQ
Sbjct: 235 RKKLINKAKIKGFVFENVGAIFNQFYSEKLPFNLTNAQKRVLKEIRKDVASGAHMNRLLQ 294

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+    A++ G QA IMAP  ILA QH+  + +  +   I V+I+TG++
Sbjct: 295 GDVGSGKTIVALLTTLLAIDNGYQATIMAPTEILANQHFIAVSELVEGMNIKVDILTGSV 354

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+  E +  G+ HI+IGTHAL +D +++  L + I+DEQHRFGV+QR KL  K +
Sbjct: 355 RTKKRREIHEGLEDGKLHILIGTHALLEDKVKFKNLGIAIIDEQHRFGVKQRAKLWAKNS 414

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKV 477
             PH+L+MTATPIPRTL ++  GD+DIS I E P GRK IKTV     NR+  V + +K 
Sbjct: 415 LPPHILVMTATPIPRTLAMSVYGDLDISVIDELPPGRKEIKTVHRFDSNRL-SVFKFMKD 473

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVM 534
            +++GK+ Y + P I+E +  +++ +++ + S+   F S    I+I+HG+M   DK+  M
Sbjct: 474 EIAKGKQVYIVYPLIQESEAMDYKDLMDGYESVAREFPSPKYQISIVHGKMKPADKDYEM 533

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G  ++++ATTVIEVG++V +AS++IIE++E FGL+QLHQLRGRVGRG + S CIL
Sbjct: 534 QRFVKGETQIMVATTVIEVGVNVPNASVMIIESSERFGLSQLHQLRGRVGRGADQSYCIL 593

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           L    LS+   TRL  + +T DGF IAE DLK R  G ++G +QSG+    IA       
Sbjct: 594 LSSYKLSEEGKTRLKTMVDTTDGFKIAEVDLKLRGPGNLMGTQQSGVLNLKIADVAKDSK 653

Query: 655 LLEIARKDAKHILTQDPDL 673
           +L  AR  A  +L +DP+L
Sbjct: 654 ILVAARNTAIDLLQEDPNL 672


>gi|148657621|ref|YP_001277826.1| ATP-dependent DNA helicase RecG [Roseiflexus sp. RS-1]
 gi|148569731|gb|ABQ91876.1| ATP-dependent DNA helicase RecG [Roseiflexus sp. RS-1]
          Length = 842

 Score =  360 bits (923), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 234/677 (34%), Positives = 356/677 (52%), Gaps = 53/677 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEI 101
           DLL++ P  + D      I+E+    + TI   +    +  ++       +L+ D TG +
Sbjct: 150 DLLYHFPHRYDDFTSHRTIAELQPGAVETIVAEVLDARTVPMKSGGTRLDVLVGDETGTL 209

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160
            ++FF  +   L   F  G K+ ++GKI        M  P +  F +   ++   +  V+
Sbjct: 210 KVVFF--RQPWLAQRFTVGTKVVLSGKIGIYDGLRQMASPEWQPFTDDDLIHVGRLVPVH 267

Query: 161 SLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
            L  GL     + +I   + R  P+L + +   +L++     +++A   IH P   +  E
Sbjct: 268 PLTRGLVERSARTLIKHVVDRCAPMLEDHLPPAVLERTGLMPLSQAIAQIHFP---ESHE 324

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
               AR RL +DE L  Q+ +L  R  ++ + G  I     + +  LR +PF  T +Q  
Sbjct: 325 MLERARRRLGFDEFLFIQLGVLQRRVIWQAQQGYAITRRDDVHEAFLRQLPFELTGAQVR 384

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A+++I  DM +   M R+LQGDVGSGKT+VA  A    + AG QA IMAP  ILA+QHY 
Sbjct: 385 ALEEIFADMERPVPMARLLQGDVGSGKTVVAAAAALQVIAAGFQAAIMAPTEILAEQHYR 444

Query: 340 FIKKYT----------------------------------------QNTQIIVEIITGNM 359
            ++                                               + V ++TG++
Sbjct: 445 SLRSLLGKVPVPRDDRHAPMDDLDPEQRERLEEIRRILGMSGDDDLDGRGVRVALLTGSL 504

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+ LE IA G   +I+GTHAL  + +QY  L L ++DEQHRFGV+QR +L  K  
Sbjct: 505 GAKERRRVLEGIARGDIDLIVGTHALISEGVQYAALGLAVIDEQHRFGVEQRQRLKDKGY 564

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH+L+MTATPIPRTL LT  GD+D+S + E P GR+ IKT  I     ++    ++  +
Sbjct: 565 NPHMLVMTATPIPRTLTLTIYGDLDVSILDELPPGRQEIKTRWITTVEREKAYRHIRREV 624

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSF 537
           ++G++A+ ICP ++E ++ +  S  E   +L         IA+IHG+M   +K++VM +F
Sbjct: 625 AKGRQAFVICPLVDESEKVDLPSAEEMHATLSRDVFPDLRIALIHGKMPPREKDAVMIAF 684

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +N    +L+AT VIEVGIDV +A+ I+IE AE FGLAQLHQ RGRVGRG   S CIL+  
Sbjct: 685 RNHEYDILVATAVIEVGIDVPNATTILIEGAERFGLAQLHQFRGRVGRGIHQSYCILVCD 744

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LL 656
              ++ +  R++ ++   DGF +AE DL+ R  GE  G +QSG P   +AQ  L D+ LL
Sbjct: 745 KDQNEVTRQRMAAMEQISDGFRLAEIDLQLRGPGEFFGTRQSGTPDLKVAQ--LADTRLL 802

Query: 657 EIARKDAKHILTQDPDL 673
             A ++A+ IL  DP L
Sbjct: 803 HTAYREAQKILADDPRL 819


>gi|327183827|gb|AEA32274.1| ATP-dependent DNA helicase RecG [Lactobacillus amylovorus GRL 1118]
          Length = 678

 Score =  360 bits (923), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 224/685 (32%), Positives = 378/685 (55%), Gaps = 26/685 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +       + G+       DLLFY P  + +    P + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTA------ADLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56

Query: 67  ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + V + G ++     S F  +K R  +KI ++    +I ++ F+ +   LK+    G++
Sbjct: 57  GQKVMLKGIVATEPFVSGFGYKKSRLSFKIRIDH---DIVMVNFFNQP-WLKSKIEIGQE 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181
           + + GK    +  +      + F  +++ N   +  +Y +   +       +I  A+ S 
Sbjct: 113 VAIYGKYNVARQSL----SAFKFVAAKE-NDSGMAPIYPVNRHVKQKKLINLINLAIDSF 167

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           L  + + + K++++K       E    +H+P+   D E    A+    + E    ++ L 
Sbjct: 168 LDQVQDIVPKEIMEKYRLLHDQEIIQKMHHPKNGHDAEL---AKRSAIFREFFIFELQLA 224

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L+     K+ G P   + K    + +++PF  +  Q+  + +I  DM    +M R+LQGD
Sbjct: 225 LLANHDGKQQGYPKKYDLKEIANLTKSLPFELSDDQKKVVNEIFADMHSDGQMRRLLQGD 284

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   + V ++TGN   
Sbjct: 285 VGSGKTIVAVYAIFAAISAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKT 344

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR+    +  G  +++IGTHAL Q ++ + KL LVI+DEQHRFGV QR  L  K   P
Sbjct: 345 LERREIYCELTDGTINVVIGTHALIQKNVIFKKLGLVIIDEQHRFGVGQRQALINKGDNP 404

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +     +++ +V + +   L +
Sbjct: 405 DILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISAWKTSSQMKDVYKLMYEQLDQ 464

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           G + Y + P I E +  + ++  E    L H+    ++ ++HG+M    K+ +M +F +G
Sbjct: 465 GFQIYAVTPLITESETLDLKNAEELHEKLSHDFPDQNVVLLHGQMPGAKKDEIMSAFASG 524

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S CI +  P  
Sbjct: 525 EINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCIFIADPK- 583

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           + +   R+ ++  T +GF +AEEDLK R EG++ G  QSG+P+F +     + + L +A+
Sbjct: 584 TDSGKARMKIIAATNNGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVAQ 643

Query: 661 KDAKHILTQDPDLTSVRGQSIRILL 685
           K A+ ++  DP+LTS    S++ +L
Sbjct: 644 KVARELVKADPELTSPEHNSLKQVL 668


>gi|160892744|ref|ZP_02073534.1| hypothetical protein CLOL250_00275 [Clostridium sp. L2-50]
 gi|156865785|gb|EDO59216.1| hypothetical protein CLOL250_00275 [Clostridium sp. L2-50]
          Length = 676

 Score =  360 bits (923), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 226/658 (34%), Positives = 353/658 (53%), Gaps = 30/658 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +G+G+K +  L+K+        +   DL+ Y+P ++I       I +I  +    +
Sbjct: 7   VTCIKGIGEKTAGNLAKL------GISTVSDLIHYYPRTYITYMDPVDIQDIQADERQAV 60

Query: 73  TGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           +  ++ +S  +++K R + I      D TG I L +F      L+N F  G +    G++
Sbjct: 61  S--VTINSRVEVKKLRGFSIATAYAKDYTGTIKLTWF--NCPFLRNYFHIGDRYIFVGEV 116

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
           K       M  P Y             + VY    G++    +K +   L  +  L ++I
Sbjct: 117 KYKNGMYTMSQPEYYTVPQYQEILKEWQPVYGCTAGITSKTIQKAVKGTLPLIQTLSDYI 176

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            +D+  +       EA   IH P           A +R+A+DE        +      K+
Sbjct: 177 PEDIRDEYDLMRANEAVTHIHFPDTEDHLR---AAIKRVAFDEFYE----FIENMHSLKE 229

Query: 250 EIGIPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              +  N + KI         + ++P+  T +Q  A++DI+ DM+ ++ M R++QGDVGS
Sbjct: 230 HDTVKYN-QAKIPFTEQVTGFIESLPYRLTGAQMDAVRDIMADMNSEHVMNRLVQGDVGS 288

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA IA+ A    G Q VIMAP  +LA QH++ +    +   I V ++TG+M    +
Sbjct: 289 GKTIVAAIALFACATQGYQGVIMAPTEVLANQHFKELTGLFEPYGIHVTLLTGSMTAKEK 348

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R+A + IA  +A +I+GTHAL QD ++Y  L LV+ DEQHRFGV+QR KL+ K   PHVL
Sbjct: 349 REAYQEIAEHRADVIVGTHALIQDKVEYDNLALVVTDEQHRFGVRQREKLSLKGGTPHVL 408

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPRTL +   GD+DIS I E PAGR PIK  ++  +   +    ++  + +G +
Sbjct: 409 VMSATPIPRTLAIIMYGDLDISVINELPAGRIPIKNCVVDESYRPKAQAFIRAEVKKGHQ 468

Query: 485 AYWICPQIEEKKE-SNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGT 541
            Y +CP +EE +   +  +VVE    L +   SSI  A +HG+M+  +K  ++  F    
Sbjct: 469 VYVVCPMVEESEALDDVANVVEYSEDLSQKLDSSIHVAYLHGKMTGDEKNRILTDFYEKK 528

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVGI+  +A+++++ENAE FGLA LHQLRGRVGRG   S CI +     +
Sbjct: 529 VDVLVSTTVIEVGINNPNATVMMVENAERFGLAALHQLRGRVGRGNLQSYCIFI-SGKKN 587

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           K    RL+VL ++ DGF IA EDLK+R  G+  GI+QSG   F +     H  +L+ A
Sbjct: 588 KEVMERLNVLADSNDGFYIAGEDLKRRGPGDFFGIRQSGDVLFKMGDIYKHADMLKAA 645


>gi|329957261|ref|ZP_08297781.1| ATP-dependent DNA helicase RecG [Bacteroides clarus YIT 12056]
 gi|328522974|gb|EGF50077.1| ATP-dependent DNA helicase RecG [Bacteroides clarus YIT 12056]
          Length = 698

 Score =  360 bits (923), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 235/675 (34%), Positives = 375/675 (55%), Gaps = 33/675 (4%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG + +  L+K +   +     F DLL+Y P  ++DR     I EI      + + G I
Sbjct: 14  GVGPQRASVLNKELGIFS-----FHDLLYYFPYKYVDRSRIYYIQEIDGTMPYIQLKGEI 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               +    ++R      +DGTG + L++F +  + L   +   ++  V GK      RI
Sbjct: 69  LGFETAGEGRQRRLIAHFSDGTGVVDLIWF-QGIKYLIGKYKVHQEYIVFGKPSVFNGRI 127

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRL-PVLPEWIE 190
            + HP     +   ++   ++  Y+       + L+    +K++   + +L   LPE + 
Sbjct: 128 NIAHPDIDPASELKLSAMGLQPYYNTTEKMKRSSLNSHAMEKMMKNIVRQLNEPLPETLS 187

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             LL +     + +A   IH P           A  RL ++EL   Q+ +L   K  +++
Sbjct: 188 PALLAEHHLMPLTDALLNIHFPVSPDALR---KAEYRLKFEELFYVQLNILRYAKDRQRK 244

Query: 251 IGIPINVEGKIAQKI--------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
                   G + +KI         RN+PF  T +Q+  +K+I +D+    +M R+LQGDV
Sbjct: 245 ------YRGYVFEKIGETFNGFYSRNLPFELTNAQKRVLKEIRRDLGSGKQMNRLLQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVAL++M  A++ G QA +MAP  ILA QHYE I++      + VE++TG++   
Sbjct: 299 GSGKTLVALMSMLIALDNGYQACMMAPTEILANQHYETIRELLYGMDVRVELLTGSIKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAP 421
            R   L  +  G   I+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L T+    P
Sbjct: 359 RREAILSGLLTGDVQILIGTHAVIEDTVNFASLGLVVIDEQHRFGVAQRARLWTKSVQPP 418

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H+L+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    +    +   ++  + E
Sbjct: 419 HILVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDSHRVSLYRSVRKQIDE 478

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNG 540
           G++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ M  F +G
Sbjct: 479 GRQVYIVYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFVSG 538

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+    L
Sbjct: 539 EAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTGYKL 598

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIA 659
           ++++  RL ++  T DGF IAE DLK R  G++ G +QSG+   L IA       LL+  
Sbjct: 599 AEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYV 658

Query: 660 RKDAKHILTQDPDLT 674
           R+ A+ I+ +DP+ +
Sbjct: 659 REVAQAIVDKDPNAS 673


>gi|256843386|ref|ZP_05548874.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 125-2-CHN]
 gi|256614806|gb|EEU20007.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 125-2-CHN]
          Length = 678

 Score =  360 bits (923), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 221/674 (32%), Positives = 373/674 (55%), Gaps = 28/674 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +  L      G+       DLLFY P  + +    P + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTTAAL------GSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56

Query: 67  ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + V + G ++     S F  +K R  +K+ ++    ++ ++ F+ +   LKN    G++
Sbjct: 57  GQKVMLKGIVATEAFVSRFGYKKTRLSFKMRIDH---DVIMVNFFNQP-WLKNKIDIGQE 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           + + GK    +  +      ++     D    P+      +     VDL    I + + +
Sbjct: 113 VAIYGKYNVARQSLTAFK--FVAAKENDSGMAPIYPVNRHVKQKKLVDLINVAIDDFIDQ 170

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           +  ++PE + ++    K    I +    +H+P+ + + E    A+    + E    ++ L
Sbjct: 171 VQDIVPEKLRQEYRLLKDQVIIEK----MHHPKNSHEAEL---AKRSAIFREFFIFELQL 223

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+ +   K++G     +     ++ +++PF  +  Q+  + +I  DM   ++M R+LQG
Sbjct: 224 ALLTRNDGKQMGYAKKYDLTEIAQLTKSLPFELSDDQKHVVNEIFADMHSDSQMRRLLQG 283

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   + V ++TGN  
Sbjct: 284 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 343

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+    +  G  +++IGTHAL QDS+ + KL LVI+DEQHRFGV QR  L  K   
Sbjct: 344 TLERREIYRELTDGTINVVIGTHALIQDSVIFKKLGLVIIDEQHRFGVGQRQALINKGDQ 403

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P +L MTATPIPRTL LT  GD+ +S+I   PAGRK I +     +++ EV  +++  L+
Sbjct: 404 PDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKSIISTWKTSSQMKEVYRQMQEQLN 463

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           +G + Y + P I E +  + ++  E    L   F +  + ++HG+M    K+ +M +F  
Sbjct: 464 QGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFAA 523

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ L  P 
Sbjct: 524 GEIDILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK 583

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            + +   R+ ++ +T DGF +AEEDLK R EG++ G  QSG+P+F +     + + L +A
Sbjct: 584 -TDSGKARMKIIASTNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVA 642

Query: 660 RKDAKHILTQDPDL 673
           +K+A+ ++  DPDL
Sbjct: 643 QKEARALVAADPDL 656


>gi|221142017|ref|ZP_03566510.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|302751050|gb|ADL65227.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus str. JKD6008]
          Length = 686

 Score =  360 bits (923), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 216/636 (33%), Positives = 359/636 (56%), Gaps = 24/636 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ Y P+ + D      +++  ++  VTI G +          R   K+ ++     I 
Sbjct: 37  DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154
           +   +     LK      + ITV GK  ++K  I     + +F NSQ        DV   
Sbjct: 96  VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            +E VY +  G+     +  I +AL+ + +  EW+  +L +K    ++    N +H+P+ 
Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208

Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            +D      AR   A+ EL   ++ +  L R +   +  I I+ +    +  +  +PF  
Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDIDQVKSFIDRLPFEL 265

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I M A   AG Q+ +M P  IL
Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH E +     ++ + V ++TG++    R+  LE++ +G    +IGTHAL QD + ++
Sbjct: 326 AEQHAESLMALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            + LVI DEQHRFGV QR  L +K    +VL MTATPIPRTL ++  G++D+S I + P 
Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512
           GRKPI T      + D+V+ ++   L +G++AY ICP IE  +   + ++VV  + SL +
Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504

Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           ++  S + ++HG++S  +K+ VM  F N    +L++TTV+EVG++V +A+ ++I +A+ F
Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEINVLVSTTVVEVGVNVPNATFMMIYDADRF 564

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+ LHQLRGRVGR ++ S C+L+  P  ++    R++++  T DGF ++E DL+ R  G
Sbjct: 565 GLSILHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659


>gi|197301673|ref|ZP_03166743.1| hypothetical protein RUMLAC_00399 [Ruminococcus lactaris ATCC
           29176]
 gi|197299113|gb|EDY33643.1| hypothetical protein RUMLAC_00399 [Ruminococcus lactaris ATCC
           29176]
          Length = 686

 Score =  360 bits (923), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 237/677 (35%), Positives = 375/677 (55%), Gaps = 32/677 (4%)

Query: 11  APLSTFRGVGKKYS-LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
           A +ST +G+G+K   LFL   +   +       DLL Y+P ++        +SE+ E  I
Sbjct: 5   AGISTLKGIGEKTEKLFLKLGVATVD-------DLLHYYPRTYEIFGPPVPVSEVQEGHI 57

Query: 70  VTITGYISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            T++G +         K      L L D TG + +++F  +   L+N       + + G+
Sbjct: 58  CTVSGAVFGRIQVSGTKNMQVTTLYLKDLTGTLKVIWF--RMPFLRNTLGRSGPVILRGR 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPL--IEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           + + ++ ++M HP  I+  +   N  L  ++ VY L  GL+ +   K + +AL    +  
Sbjct: 116 VVRKRDGLVMEHPQ-IYDPAARYNEKLHSMQPVYGLTAGLTNNAIIKAVRQALESNSIPE 174

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           +++ ++L    +FP    A   +H P   + F     AR R  ++E L   ++L     +
Sbjct: 175 DFLPEELETAYNFPPYEAALYEMHFPHSKETF---IEARRRFVFEEFLTFVLSL-----R 226

Query: 247 FKKEIGIPINVEGKIAQK-----ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           + KE G  +     + Q+      L+++P+  T +Q     +I ++M+    M R++QGD
Sbjct: 227 YVKESGERMKNHFTMKQQPAIDTFLQSLPYELTAAQMRVWNEIQKEMTGDYVMSRLVQGD 286

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV--EIITGNM 359
           VGSGKT+VA + +  +   G Q  +MAP  +LA+QHYE I    ++  + +  E++TG+M
Sbjct: 287 VGSGKTIVAFLGLLLSGLNGYQGALMAPTEVLARQHYEKISGMLEHYGLPLKAELLTGSM 346

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +R+A  RI  G + IIIGTHAL Q+ + Y  L LVI DEQHRFGV+QR +L  K  
Sbjct: 347 TAKQKREAYVRIESGSSSIIIGTHALIQEKVNYRNLALVITDEQHRFGVRQREQLAGKGL 406

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH+L+M+ATPIPRTL +   GD+DIS I E P  R PIK  ++      +    ++   
Sbjct: 407 TPHILVMSATPIPRTLGIILYGDLDISVINELPMNRLPIKNCVVDTGYRPKAYAFIRQQT 466

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSF 537
             G++ Y ICP +EE +  +  +V +    L E    SI +  +HG+M + +K+ +M +F
Sbjct: 467 ELGRQCYVICPMVEESENLDAENVTDYSQMLQEILGPSIRVGYLHGKMKEKEKDEIMTAF 526

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                ++L++TTV+EVGIDV +A++I+IENAE FGLAQLHQLRGRVGRG+  S CI +  
Sbjct: 527 GRNEIQVLVSTTVVEVGIDVPNATVIMIENAERFGLAQLHQLRGRVGRGKYQSYCIFM-T 585

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
              SK +  RL +L ++ DGF IA EDL+ R  G++ GI+QSG+  F IA      +LL+
Sbjct: 586 ASRSKETKERLEILNHSNDGFYIANEDLRLRGPGDLFGIRQSGVLDFKIADVFQDAALLQ 645

Query: 658 IARKDAKHILTQDPDLT 674
            A   A+ +L +DPDL+
Sbjct: 646 EANAAAERLLLEDPDLS 662


>gi|227548103|ref|ZP_03978152.1| possible DNA helicase RecG [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079829|gb|EEI17792.1| possible DNA helicase RecG [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 700

 Score =  360 bits (923), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 229/675 (33%), Positives = 365/675 (54%), Gaps = 53/675 (7%)

Query: 30  IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP 89
           I +CG        DLL ++P  ++      ++    E   ++I G +        + +  
Sbjct: 28  IESCG--------DLLRHYPRKYLHYGAGSELEGTREGDTISIIGRVIDTHFIPREGKPI 79

Query: 90  YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS- 148
           YKI ++DG   I   FF  +  M      EG+++ +TGK+   ++   + HP ++  +  
Sbjct: 80  YKITVDDGRYRIGATFFGSRFAM--RALTEGKRVMLTGKLSFFRSAPQLQHPDFVLLDGP 137

Query: 149 --------QDVNFPLIEAVYS-------LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
                   Q  +F  +E + S        P    V  +  I+    + L  LP   E   
Sbjct: 138 TQATGALKQLSHFGDLEEILSGREWLPLYPATSKVSTWT-IMGAVHAVLKTLPPVEEPLG 196

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ----FKK 249
                + S+ +A   IH P  A        AR RL Y+E  A  IAL++  ++     + 
Sbjct: 197 FTPIGYSSLNKAIREIHEPGPAG----PDAARRRLKYEE--ASGIALVMAVRRADRLLED 250

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
              +P  V G    ++L N+PF  T  Q+  + DI  DMS+   M R+LQG+VGSGKT+V
Sbjct: 251 ATALP-PVRGGQFDQLLGNLPFPLTDGQKQVLADITADMSRPRPMSRLLQGEVGSGKTIV 309

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRKA 367
           +L+AM  AV+ G Q  ++AP  +L  QH   +++      +   ++  TG+M  A R++A
Sbjct: 310 SLLAMLQAVDNGSQCALLAPTEVLTMQHARSLQETALRAGLTTSVVALTGSMTAAQRQEA 369

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--TAPHVLL 425
           L  I  GQA I++GTHAL Q+S+++++L LV+VDEQHRFGV+QR  L  K   + PHVL+
Sbjct: 370 LLNIVSGQADIVVGTHALIQESVEFFRLGLVVVDEQHRFGVEQRDALRAKGGDSPPHVLV 429

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEG 482
           MTATPIPRT+ +T  GD++IS + E P GRKPI++ ++P  +   ++   E+++     G
Sbjct: 430 MTATPIPRTMAITVFGDLEISTLRELPGGRKPIQSSVVPQFKSAWVERGWEKIREEAQAG 489

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           ++AY +CP+I+         +     S  E     + ++HGRM   DK++VM  F  G  
Sbjct: 490 RQAYIVCPRIDG---DGGVLITAAMLSATEFADLDVGVLHGRMKGEDKDAVMKDFAAGAI 546

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L++TTVIEVG+DV +A+++++  +EHFG++QLHQLRGRVGRG + S C  L+H    +
Sbjct: 547 DVLVSTTVIEVGVDVPNATVMMVRESEHFGVSQLHQLRGRVGRGGKQSLC--LFHTLADE 604

Query: 603 NS--YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIA 659
           +S  + R+  +  T DGF +AE DL+ R+EG+ILG+ QSG  + L     + D  +++ A
Sbjct: 605 DSQAFERVCQVAATADGFALAELDLRTRQEGDILGVNQSGSHRTLRLINLVDDFDIVQRA 664

Query: 660 RKDAKHILTQDPDLT 674
             DA+  + Q P L 
Sbjct: 665 YDDAERFVEQHPQLA 679


>gi|260591802|ref|ZP_05857260.1| ATP-dependent DNA helicase RecG [Prevotella veroralis F0319]
 gi|260536086|gb|EEX18703.1| ATP-dependent DNA helicase RecG [Prevotella veroralis F0319]
          Length = 698

 Score =  360 bits (923), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 228/667 (34%), Positives = 376/667 (56%), Gaps = 22/667 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITGYI 76
           GVG +    LSK +         + DLL Y+P  ++DR     +SE+S +   V +   I
Sbjct: 13  GVGPRRKEILSKELGI-----LTYRDLLEYYPYKYVDRTKVYLLSELSADMPFVQVKCKI 67

Query: 77  SQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
             +  F++ KRR   +    DG G I  + ++  T+ +   +   ++  + GK      R
Sbjct: 68  LSYEEFEVGKRRKRIVAHATDGHG-ICDIVWFNGTKYIYQNYQINKEYIIFGKPTYYNGR 126

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRLPV-LPEWI 189
               HP     +   +N   ++  Y         G++    +K+    +S+L   L E +
Sbjct: 127 FQFSHPDIDDASQLQLNDMGMQPFYITTEKMKKAGITSRAMEKLTKTLISKLTTPLEETL 186

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              +  +    S   A   IH P+   D   T  AR RL ++EL   Q+ +L      ++
Sbjct: 187 PPYITTRLHLISHDAAMRKIHYPKSVDD---TQRARIRLKFEELFYVQLNILRYASDHRR 243

Query: 250 EI-GIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +  G   N +  +       N+PF  T +Q+  + +I  DM    +M R+LQGDVGSGKT
Sbjct: 244 KYRGYIFNRIGAQFNWFYTHNLPFELTGAQKRVMHEIRADMMSGKQMNRLLQGDVGSGKT 303

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           LVAL++M  A++ G QA +MAP  ILA+QH + IK++ +   + +E++TG +    R++ 
Sbjct: 304 LVALMSMLIAIDNGYQACMMAPTEILAEQHLQTIKEFLKGMNLRIELLTGIVKGKKRKEV 363

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLM 426
           L  +  G  +I++GTHA+ +D +Q+  L + +VDEQHRFGV QR KL  K+   PH+L+M
Sbjct: 364 LAGLVDGSINIVVGTHAIIEDKVQFLNLGMAVVDEQHRFGVAQRAKLWSKSENPPHILVM 423

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL +T  GD+D+S I E P GRKPI+T+    +++  + + ++  ++ G++ Y
Sbjct: 424 TATPIPRTLAMTIYGDLDVSIIDELPPGRKPIQTIHKYDDQMTSLYQGIRQQITLGRQVY 483

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            + P I+E +  + +++ + + ++ E F    ++ IHG+M D +KE  M  F +G  ++L
Sbjct: 484 IVYPLIKESERIDLKNLEDGYAAMCEIFPEFKLSKIHGKMKDKEKEVEMQKFVSGETQIL 543

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ +  L+K + 
Sbjct: 544 VATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVTNHKLTKETS 603

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAK 664
            R+ ++  T DGF IAE DLK R  G++ G +QSG+   L IA       ++++AR++A+
Sbjct: 604 KRIDIMCETNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQIVQMAREEAQ 663

Query: 665 HILTQDP 671
            ++  DP
Sbjct: 664 KVIDNDP 670


>gi|302332831|gb|ADL23024.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 686

 Score =  359 bits (922), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 216/636 (33%), Positives = 358/636 (56%), Gaps = 24/636 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ Y P+ + D      +++  ++  VTI G +          R   K+ ++     I 
Sbjct: 37  DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154
           +   +     LK      + ITV GK  ++K  I     +  F NSQ        DV   
Sbjct: 96  VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRFFFNSQGTQNQENADVQ-- 150

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            +E VY +  G+     +  I +AL+ + +  EW+  +L +K    ++    N +H+P+ 
Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208

Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            +D      AR   A+ EL   ++ +  L R +   +  I I+ +    +  +  +PF  
Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFEL 265

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I M A   AG Q+ +M P  IL
Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH E +     ++ + V ++TG++    R+  LE++ +G    +IGTHAL QD + ++
Sbjct: 326 AEQHAESLIALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            + LVI DEQHRFGV QR  L +K    +VL MTATPIPRTL ++  G++D+S I + P 
Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512
           GRKPI T      + D+V+ ++   L +G++AY ICP IE  +   + ++VV  + SL +
Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504

Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           ++  S + ++HG++S  +K+ VM  F N    +L++TTV+EVG++V +A+ ++I +A+ F
Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+ LHQLRGRVGR ++ S C+L+  P  ++    R++++  T DGF ++E DL+ R  G
Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659


>gi|227513464|ref|ZP_03943513.1| DNA helicase RecG [Lactobacillus buchneri ATCC 11577]
 gi|227524607|ref|ZP_03954656.1| DNA helicase RecG [Lactobacillus hilgardii ATCC 8290]
 gi|227083337|gb|EEI18649.1| DNA helicase RecG [Lactobacillus buchneri ATCC 11577]
 gi|227088282|gb|EEI23594.1| DNA helicase RecG [Lactobacillus hilgardii ATCC 8290]
          Length = 727

 Score =  359 bits (922), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 237/680 (34%), Positives = 369/680 (54%), Gaps = 45/680 (6%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           L  L   ++  +GVG K  + L+K+ IN  N       DLL Y P  + D   +   + I
Sbjct: 52  LTSLNDSVAVLKGVGTKRLVALNKLGINTIN-------DLLTYFPRRYDDLSIKDLSNAI 104

Query: 65  SEERIVTITGYI---SQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
             ++ VT+ G +      + F  +K R  +++ +ND     T+ FF +    LK      
Sbjct: 105 DGQK-VTVKGMVIAPPTLTYFGRKKSRLVFRLKINDNI--YTVSFFNQ--PWLKREVNSN 159

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            +I V G   + +N+I       I  +    +F   +++Y     +     K +I  A  
Sbjct: 160 DEIIVFGTYNRSRNQI---QGMKILTDQSSNSF---DSIYPASKEVKQATIKSLIKMAYD 213

Query: 181 RLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
                L   I   L  K    S  +    IH P         SP   + A+      +  
Sbjct: 214 MYHTQLTNVIPDKLRAKYRLESFPDTIRNIHFPE--------SPKAAQRAFRTAKFMEFF 265

Query: 240 LLLMRKQF------KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           L  M+ Q       K +    I+ +  + +K  +++PF  T +Q+   ++IL D+++  +
Sbjct: 266 LFAMKVQILRESHRKTDPHAQIHYQQSLLEKFQKSLPFDLTPAQQKVAREILADLNRPIQ 325

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA +A+ A + A  QA IMAP  ILA+QH     K      + + 
Sbjct: 326 MNRLLQGDVGSGKTVVAAMAILATISAHKQAAIMAPTEILAEQHANNFAKMFDGLDVNIA 385

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+   A RR  L  I  G+  +I+GTHALFQ+ +QY  L L ++DEQHRFGV QR  
Sbjct: 386 LLTGDTSAAARRAMLPSIQSGEVDLIVGTHALFQNDVQYDNLGLAVIDEQHRFGVNQRQA 445

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L QK T+ ++L MTATPIPRTL +T  GD+D+S I + P+GRKPIKT  I   + +  I 
Sbjct: 446 LRQKGTSTNMLAMTATPIPRTLAITMYGDMDVSIINQLPSGRKPIKTTWITSAKTNSAIR 505

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVV---ERFNSLHE-HFTSSIAIIHGRMSDID 529
            +K  L  G + Y + P IEE +  + ++ V   ERF ++ E  F   + ++HG+MS+ +
Sbjct: 506 FVKKQLDNGNQVYVVTPLIEESEAVDMKNAVAIFERFKTIFEPQF--KVGLLHGQMSNQE 563

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+  M SFKN   ++L+ATTVIEVG+DV +A+ ++I +A+HFGLAQLHQLRGRVGRG   
Sbjct: 564 KDDTMVSFKNNQFQVLVATTVIEVGVDVANANTMLIFDADHFGLAQLHQLRGRVGRGSTQ 623

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+  P  ++    R+  + ++ +GF ++++DL+ R +G+I G KQSGMP F +A P
Sbjct: 624 SYCVLIADPK-NEVGKERMKAVASSTNGFFLSQKDLELRGQGDITGAKQSGMPDFKVADP 682

Query: 650 ELHDSLLEIARKDAKHILTQ 669
               ++L +A ++A++I  +
Sbjct: 683 VGDLNILTVANQEAQNITAE 702


>gi|227544370|ref|ZP_03974419.1| DNA helicase RecG [Lactobacillus reuteri CF48-3A]
 gi|300909769|ref|ZP_07127230.1| DNA helicase RecG [Lactobacillus reuteri SD2112]
 gi|227185633|gb|EEI65704.1| DNA helicase RecG [Lactobacillus reuteri CF48-3A]
 gi|300893634|gb|EFK86993.1| DNA helicase RecG [Lactobacillus reuteri SD2112]
          Length = 686

 Score =  359 bits (922), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 231/667 (34%), Positives = 367/667 (55%), Gaps = 22/667 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEI 64
           L  L   ++  +GVG K      ++ +          DLL Y+P+ + D  + P  I   
Sbjct: 9   LRSLTDSVANLKGVGPK------RVADLATLGIDTIEDLLTYYPTRYND--FTPTDIESA 60

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKI 123
            +++ +T+ G +           R  ++      G E+ +  F+ +  + K +    +++
Sbjct: 61  KDKQKITLQGVVVSEPLLVRYGYRRNRLTFRMQVGNEVVIATFFNQPYIKKQIEL-NQQV 119

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           TV GK    + ++       +   + D N     AVY++   +  ++ +  I +A     
Sbjct: 120 TVMGKWDASRRQV--TGNKLLKEKADDRNE--FGAVYAVNKHIRQNVLQSFIRQAYEEYA 175

Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            ++P ++ + + Q+       +    IH P+          AR   AY+E    Q+ L  
Sbjct: 176 NIIPTYLPETIRQRYRLMDRRQMIREIHFPQTQA---TAKAARRTAAYEEFFLFQLRLQA 232

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  ++E G  I       ++ +  +PF  T +Q+  + +I +DM Q  +M R+LQGDV
Sbjct: 233 IRRAHRQEDGERILYHNDELKEFIGGLPFELTDAQKRVVNEICRDMRQPYQMNRLLQGDV 292

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA IA+ AA+ AG QA +MAP  ILA QH E + K  + T + V ++TG++   
Sbjct: 293 GSGKTIVAAIAIYAAITAGYQAALMAPTEILAGQHAEKLAKIFEGTHVQVALLTGSLTAK 352

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
             R+ L  +  G  ++I+GTHAL QD ++Y  L LVI DEQHRFGV QR +L +K   P 
Sbjct: 353 QHRELLTAMKRGDVNLIVGTHALIQDGVEYANLGLVITDEQHRFGVNQRQQLREKGEHPD 412

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL +T+ G++D+S I + PAGRKPI+T  +  N+    I  L+  L +G
Sbjct: 413 VLAMTATPIPRTLAITNYGEMDVSIIDQLPAGRKPIQTKWLQSNQHAAAIHFLREQLKQG 472

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540
            +AY + P IEE    + ++  + +N L      +  + ++HGRM   +K+  M  FK+G
Sbjct: 473 AQAYVVSPLIEESAALDVQNATDLYNQLSADLEPAYKVGLLHGRMGTEEKDEAMRQFKSG 532

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+D  +A++++I +A+ FGLAQLHQLRGRVGRG   S C+L+  P  
Sbjct: 533 ELQVLVATTVIEVGVDNPNATVMVIYDADRFGLAQLHQLRGRVGRGSRQSYCLLIADPKT 592

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            +    R+  +  T+DGF IAE+DLK R  G++LG KQSGMP+F +  P     +L+IAR
Sbjct: 593 DEGK-ARMKTMVATDDGFKIAEQDLKLRGSGDVLGKKQSGMPEFKVGDPVADLKMLQIAR 651

Query: 661 KDAKHIL 667
            DA ++L
Sbjct: 652 ADAGNLL 658


>gi|21282839|ref|NP_645927.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486066|ref|YP_043287.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|300912209|ref|ZP_07129652.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus TCH70]
 gi|38605354|sp|Q8NX11|RECG_STAAW RecName: Full=ATP-dependent DNA helicase recG
 gi|81649427|sp|Q6G9Y6|RECG_STAAS RecName: Full=ATP-dependent DNA helicase recG
 gi|21204278|dbj|BAB94975.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244509|emb|CAG42938.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|300886455|gb|EFK81657.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus TCH70]
          Length = 686

 Score =  359 bits (922), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 216/636 (33%), Positives = 358/636 (56%), Gaps = 24/636 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ Y P+ + D      +++  ++  VTI G +          R   K+ ++     I 
Sbjct: 37  DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNNSKLTVHLMVNNIA 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154
           +   +     LK      + ITV GK  ++K  I     + +F NSQ        DV   
Sbjct: 96  VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            +E VY +  G+     +  I +AL+ + +  EW+  +L +K    ++    N +H+P+ 
Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208

Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            +D      AR   A+ EL   ++ +  L R +   +  I I+      +  +  +PF  
Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYGLDQVKSFIDRLPFEL 265

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I M A   AG Q+ +M P  IL
Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH E +     ++ + V ++TG++    R+  LE++ +G    +IGTHAL QD + ++
Sbjct: 326 AEQHAESLMALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            + LVI DEQHRFGV QR  L +K    +VL MTATPIPRTL ++  G++D+S I + P 
Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512
           GRKPI T      + D+V+ ++   L +G++AY ICP IE  +   + ++VV  + SL +
Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504

Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           ++  S + ++HG++S  +K+ VM  F N    +L++TTV+EVG++V +A+ ++I +A+ F
Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+ LHQLRGRVGR ++ S C+L+  P  ++    R++++  T DGF ++E DL+ R  G
Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659


>gi|325957104|ref|YP_004292516.1| ATP-dependent DNA helicase RecG [Lactobacillus acidophilus 30SC]
 gi|325333669|gb|ADZ07577.1| ATP-dependent DNA helicase RecG [Lactobacillus acidophilus 30SC]
          Length = 678

 Score =  359 bits (922), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 224/685 (32%), Positives = 377/685 (55%), Gaps = 26/685 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +       + G+       DLLFY P  + +    P + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTA------ADLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56

Query: 67  ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + V + G ++     S F  +K R  +KI ++    +I ++ F+ +   LK+    G++
Sbjct: 57  GQKVMLKGIVATEPFVSGFGYKKSRLSFKIRIDH---DIVMVNFFNQP-WLKSKIEIGQE 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181
           + + GK    +  +      + F  +++ N   +  +Y +   +       +I  A+ S 
Sbjct: 113 VAIYGKYNVARQSL----SAFKFVAAKE-NDSGMAPIYPVNRHVKQKKLINLINLAIDSF 167

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           L  + + + K++++K       E    +H+P+   D E    A+    + E    ++ L 
Sbjct: 168 LDQVQDIVPKEIMEKYRLLHDQEIIQKMHHPKNGHDAEL---AKRSAIFREFFIFELQLA 224

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L+     K+ G P   + K    + +++PF  +  Q+  + +I  DM    +M R+LQGD
Sbjct: 225 LLANHDGKQQGYPKKYDLKEIANLTKSLPFELSDDQKKVVNEIFADMHSDGQMRRLLQGD 284

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   + V ++TGN   
Sbjct: 285 VGSGKTVVAVYAIFAAISAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKT 344

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR+    +  G  + +IGTHAL Q ++ + KL LVI+DEQHRFGV QR  L  K   P
Sbjct: 345 LERREIYRELTDGTINAVIGTHALIQKNVIFKKLGLVIIDEQHRFGVGQRQALINKGDNP 404

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +     +++ +V + +   L +
Sbjct: 405 DILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISAWKTSSQMKDVYKLMYEQLDQ 464

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           G + Y + P I E +  + ++  E    L H+    ++ ++HG+M    K+ +M +F +G
Sbjct: 465 GFQIYAVTPLITESETLDLKNAEELHEKLSHDFPDQNVVLLHGQMPGAKKDEIMSAFASG 524

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S CI +  P  
Sbjct: 525 EINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCIFIADPK- 583

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           + +   R+ ++  T +GF +AEEDLK R EG++ G  QSG+P+F +     + + L +A+
Sbjct: 584 TDSGKARMKIIAATNNGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVAQ 643

Query: 661 KDAKHILTQDPDLTSVRGQSIRILL 685
           K A+ ++  DP+LTS    S++ +L
Sbjct: 644 KVARELVKADPELTSPEHNSLKQVL 668


>gi|167904186|ref|ZP_02491391.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei NCTC
           13177]
          Length = 443

 Score =  359 bits (922), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 188/417 (45%), Positives = 267/417 (64%), Gaps = 10/417 (2%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA +MA
Sbjct: 11  LPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAALMA 70

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTHA+ QD
Sbjct: 71  PTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHAMIQD 130

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLVLTS 439
           ++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL +T 
Sbjct: 131 TVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTLAMTY 190

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE +   
Sbjct: 191 YADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEESETLQ 250

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++ VE + +L        + ++HGR++ ++K +VMD+F     +LL+ATTVIEVG+DV 
Sbjct: 251 LQTAVETYETLAAALPELKVGLVHGRLAPVEKAAVMDAFSRNDVQLLVATTVIEVGVDVP 310

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ T DGF
Sbjct: 311 NASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRETTDGF 370

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++ +
Sbjct: 371 EIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVVA 427


>gi|325567339|ref|ZP_08144006.1| DNA helicase RecG [Enterococcus casseliflavus ATCC 12755]
 gi|325158772|gb|EGC70918.1| DNA helicase RecG [Enterococcus casseliflavus ATCC 12755]
          Length = 695

 Score =  359 bits (922), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 229/672 (34%), Positives = 384/672 (57%), Gaps = 33/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+  +GVG+K +  L+ +       ET   DLL Y+P  + D   R +++EI ++ 
Sbjct: 21  LNQPLTVLKGVGEKRAQDLASL-----GIET-IEDLLKYYPFRYEDIQER-QLAEIQDQE 73

Query: 69  IVTITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
            VTI G +      + F  +K R    ++ D   ++  + F+ +   LK+      +I V
Sbjct: 74  KVTIKGIVVSPPVVNRFGYKKSRLQFRMMQDH--DVFNVSFFNQP-YLKDKVEVSEEIAV 130

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183
            GK    +  +  +    I  +    +F P+      +   + ++L K+  ++   ++  
Sbjct: 131 YGKWDAKRKGLTGMK---ILGSKSAEDFAPIYHVNKVVRQSVLIELIKQAFLDFGDQITE 187

Query: 184 VLP-EWIEK-DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +LP   IEK  LL +KS      A   +H P   KD + +  A+ R+ ++E    Q+ + 
Sbjct: 188 ILPLSLIEKYRLLDRKS------AMFAMHFP---KDPQESHQAKRRVIFEEFFLFQMQIQ 238

Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++K  K E  G+ I+ + +  ++  R +PF  T +Q+    +I  D+     M R+LQG
Sbjct: 239 GLKKSEKAEKNGLAIDYDVQRLKEFTRKLPFELTNAQKRVTNEICHDLKSPQHMQRLLQG 298

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA I + A + AG Q  +M P  ILAQQH E + +     ++   ++TG+  
Sbjct: 299 DVGSGKTVVAAITLYATMTAGFQGALMVPTEILAQQHLESLNQLFDPLEVTTALLTGSTK 358

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR  LE++A G+  II+GTHAL Q+ + +  L LVI DEQHRFGV QR  L +K   
Sbjct: 359 PKERRVILEQLAAGEIDIIVGTHALIQEGVDFAHLGLVITDEQHRFGVNQRKVLREKGYL 418

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL MTATPIPRTL +T+ G++D+S I E PAGR P++T  +   + + ++E  +  L+
Sbjct: 419 PDVLFMTATPIPRTLAITAYGEMDVSVIDEMPAGRIPVETRWVRPPQFESILEWAQKELA 478

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFK 538
           +G + Y ICP IEE +  + ++  E +  L  +F  T  + ++HG+M + +K+++M++FK
Sbjct: 479 QGHQMYVICPLIEESEMLDVKNATEIYEQLQSYFSPTYQVGMLHGKMKNQEKDTIMEAFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P
Sbjct: 539 ENQLQILVSTTVIEVGVNVPNATVMLIIDADRFGLAQLHQLRGRVGRGADASYCILIANP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F  A       +LE+
Sbjct: 599 K-NETGVERMKIMTETTNGFVVSEKDLQLRGPGEVFGNRQSGLPEFAAADLVADAHILEV 657

Query: 659 ARKDAKHILTQD 670
           A+ +A  +  ++
Sbjct: 658 AQVEATQLWQKN 669


>gi|297208129|ref|ZP_06924560.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|296887372|gb|EFH26274.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus ATCC 51811]
          Length = 686

 Score =  359 bits (922), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 216/636 (33%), Positives = 358/636 (56%), Gaps = 24/636 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ Y P+ + D      +++  ++  VTI G +          R   K+ ++     I 
Sbjct: 37  DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154
           +   +     LK      + ITV GK  ++K  I     + +F NSQ        DV   
Sbjct: 96  VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            +E VY +  G+     +  I +AL+ + +  EW+  +L +K    ++    N +H+P+ 
Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208

Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            +D      AR   A+ EL   ++ +  L R +   +  I I+      +  +  +PF  
Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYGLDQVKSFIDRLPFEL 265

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I M A   AG Q+ +M P  IL
Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH E +     ++ + V ++TG++    R+  LE++ +G    +IGTHAL QD + ++
Sbjct: 326 AEQHAESLMALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFH 384

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            + LVI DEQHRFGV QR  L +K    +VL MTATPIPRTL ++  G++D+S I + P 
Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512
           GRKPI T      + D+V+ ++   L +G++AY ICP IE  +   + ++VV  + SL +
Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504

Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           ++  S + ++HG++S  +K+ VM  F N    +L++TTV+EVG++V +A+ ++I +A+ F
Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+ LHQLRGRVGR ++ S C+L+  P  ++    R++++  T DGF ++E DL+ R  G
Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659


>gi|282916476|ref|ZP_06324238.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770288|ref|ZP_06343180.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus H19]
 gi|282319916|gb|EFB50264.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460435|gb|EFC07525.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus H19]
          Length = 686

 Score =  359 bits (922), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 216/636 (33%), Positives = 358/636 (56%), Gaps = 24/636 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ Y P+ + D      +++  ++  VTI G +          R   K+ ++     I 
Sbjct: 37  DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154
           +   +     LK      + ITV GK  ++K  I     + +F NSQ        DV   
Sbjct: 96  VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFFNSQGTQTQENADVQ-- 150

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            +E VY +  G+     +  I +AL+ + +  EW+  +L +K    ++    N +H+P+ 
Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208

Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            +D      AR   A+ EL   ++ +  L R +   +  I I+ +    +  +  +PF  
Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFEL 265

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I M A   AG Q+ +M P  IL
Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH E +     ++ + V ++TG++    R+  LE++ +G    +IGTHAL QD + + 
Sbjct: 326 AEQHAESLIALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFN 384

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            + LVI DEQHRFGV QR  L +K    +VL MTATPIPRTL ++  G++D+S I + P 
Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512
           GRKPI T      + D+V+ ++   L +G++AY ICP IE  +   + ++VV  + SL +
Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504

Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           ++  S + ++HG++S  +K+ VM  F N    +L++TTV+EVG++V +A+ ++I +A+ F
Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+ LHQLRGRVGR ++ S C+L+  P  ++    R++++  T DGF ++E DL+ R  G
Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659


>gi|58337584|ref|YP_194169.1| ATP-dependent DNA helicase RecG [Lactobacillus acidophilus NCFM]
 gi|58254901|gb|AAV43138.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
          Length = 678

 Score =  359 bits (922), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 225/676 (33%), Positives = 368/676 (54%), Gaps = 32/676 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +       + G+       DLLFY P  + +    P + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTA------ADLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56

Query: 67  ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + V + G ++     S F  +K R  +K+ ++    E+ ++ F+ +   LKN    G++
Sbjct: 57  GQKVVLKGIVATEPFVSRFGYKKSRLSFKMRIDH---EVIMVNFFNQP-WLKNKIEIGQE 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           I + GK    +  +      ++     D    P+      +     V L    I E L +
Sbjct: 113 IAIYGKYNVARQSLSAFK--FVAAKENDSGMAPIYPVNRHIKQKKLVSLIDLAIEEFLDQ 170

Query: 182 L-PVLPEWIEKD--LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           +  ++PE I ++  LL  +      E    +H+P+ + D E     +    + E    ++
Sbjct: 171 VNDIVPEKIRQEYHLLNDR------EIITKMHHPKNSNDAEI---GKRSAIFREFFIFEL 221

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
            L L+ K+   ++G     + K    + +++PF  +  Q+  + +I  D+   N+M R+L
Sbjct: 222 QLALLTKKDGNQLGYAKKYDLKEVANLTKSLPFELSDDQKHVVNEIFADLHSSNQMRRLL 281

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   I V ++T N
Sbjct: 282 QGDVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPFGIRVALLTSN 341

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                RR+    +  G  +++IGTHAL Q ++ + KL LVI+DEQHRFGV QR  L  K 
Sbjct: 342 TKTLERREIYRELTDGTINVVIGTHALIQKNVIFKKLGLVIIDEQHRFGVGQRQALINKG 401

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL MTATPIPRTL LT  GD+ +S+I   P+GRKPI +     +++ +V +R+   
Sbjct: 402 DNPDVLAMTATPIPRTLALTVYGDMTLSEIHHLPSGRKPIISSWKTSSQMKDVYKRMHEQ 461

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSF 537
           L +G + Y + P I + +  + ++  E    L   F    + ++HG+M  + K+ +M +F
Sbjct: 462 LDQGFQIYAVTPLITDSETLDLKNAEELHEKLSHDFPDKKVVLLHGQMPGVKKDEIMSAF 521

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G   +L+ T+VIEVG+DV +A+++II NA+ FGL+QLHQLRGR+GRGE  S C+ +  
Sbjct: 522 ASGEINILVTTSVIEVGVDVANANMMIIYNADRFGLSQLHQLRGRIGRGETQSYCVFIAD 581

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           P  +     R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F +     + + L 
Sbjct: 582 PR-TDTGKARMKIISATNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLV 640

Query: 658 IARKDAKHILTQDPDL 673
           +A+K A+ ++  DPDL
Sbjct: 641 VAQKIARKLVNDDPDL 656


>gi|227904224|ref|ZP_04022029.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
 gi|227867872|gb|EEJ75293.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
          Length = 682

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 225/676 (33%), Positives = 368/676 (54%), Gaps = 32/676 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +       + G+       DLLFY P  + +    P + +I +
Sbjct: 8   NALFAPVTDLKGVGTKTA------ADLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 60

Query: 67  ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + V + G ++     S F  +K R  +K+ ++    E+ ++ F+ +   LKN    G++
Sbjct: 61  GQKVVLKGIVATEPFVSRFGYKKSRLSFKMRIDH---EVIMVNFFNQP-WLKNKIEIGQE 116

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           I + GK    +  +      ++     D    P+      +     V L    I E L +
Sbjct: 117 IAIYGKYNVARQSLSAFK--FVAAKENDSGMAPIYPVNRHIKQKKLVSLIDLAIEEFLDQ 174

Query: 182 L-PVLPEWIEKD--LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           +  ++PE I ++  LL  +      E    +H+P+ + D E     +    + E    ++
Sbjct: 175 VNDIVPEKIRQEYHLLNDR------EIITKMHHPKNSNDAEI---GKRSAIFREFFIFEL 225

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
            L L+ K+   ++G     + K    + +++PF  +  Q+  + +I  D+   N+M R+L
Sbjct: 226 QLALLTKKDGNQLGYAKKYDLKEVANLTKSLPFELSDDQKHVVNEIFADLHSSNQMRRLL 285

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   I V ++T N
Sbjct: 286 QGDVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPFGIRVALLTSN 345

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                RR+    +  G  +++IGTHAL Q ++ + KL LVI+DEQHRFGV QR  L  K 
Sbjct: 346 TKTLERREIYRELTDGTINVVIGTHALIQKNVIFKKLGLVIIDEQHRFGVGQRQALINKG 405

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL MTATPIPRTL LT  GD+ +S+I   P+GRKPI +     +++ +V +R+   
Sbjct: 406 DNPDVLAMTATPIPRTLALTVYGDMTLSEIHHLPSGRKPIISSWKTSSQMKDVYKRMHEQ 465

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSF 537
           L +G + Y + P I + +  + ++  E    L   F    + ++HG+M  + K+ +M +F
Sbjct: 466 LDQGFQIYAVTPLITDSETLDLKNAEELHEKLSHDFPDKKVVLLHGQMPGVKKDEIMSAF 525

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G   +L+ T+VIEVG+DV +A+++II NA+ FGL+QLHQLRGR+GRGE  S C+ +  
Sbjct: 526 ASGEINILVTTSVIEVGVDVANANMMIIYNADRFGLSQLHQLRGRIGRGETQSYCVFIAD 585

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           P  +     R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F +     + + L 
Sbjct: 586 PR-TDTGKARMKIISATNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLV 644

Query: 658 IARKDAKHILTQDPDL 673
           +A+K A+ ++  DPDL
Sbjct: 645 VAQKIARKLVNDDPDL 660


>gi|196231017|ref|ZP_03129877.1| ATP-dependent DNA helicase RecG [Chthoniobacter flavus Ellin428]
 gi|196224847|gb|EDY19357.1| ATP-dependent DNA helicase RecG [Chthoniobacter flavus Ellin428]
          Length = 693

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 226/666 (33%), Positives = 352/666 (52%), Gaps = 31/666 (4%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGE-- 100
           LL + P  + DR           E  V + G + + S  +++  ++ + ++L +      
Sbjct: 23  LLTHFPKRYEDRTRFDHFPTGDSEEPVCVCGIVKKTSLRRIRGWQKMFDVILEEEEAHAL 82

Query: 101 ---ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPL- 155
              IT  +F      ++ +   G+++ V GK K+  + +++ HP + I  N  +V+  L 
Sbjct: 83  SQPITCRWF--NAHWVEKMIVTGQRLVVYGKPKRSGSSVVLAHPEFEIVENDAEVSLHLN 140

Query: 156 -IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            +  ++    GLS  + +++I + L  +   P  +E  +           A   +H P  
Sbjct: 141 RLTPIHRATEGLSPRVMRRLIWDVLEHMEKTP--VESLIPDSLDATPRGWALRQVHFP-- 196

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
             + E  + AR  L   E    Q+ +   R +   + G    V   + Q++   +PF  T
Sbjct: 197 -DNQETLAKARRHLVLTEFFGMQLCVAAKRAEQTSQPGASHFVADTLMQRLHAALPFPLT 255

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            +Q+ AI +I  D++    M R+L GDVGSGKTLVAL AM  AVEAG QA +MAP  ILA
Sbjct: 256 GAQQRAIGEIRADLAALRPMNRLLHGDVGSGKTLVALSAMLLAVEAGYQAALMAPTQILA 315

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHR-----RKALERIA---------HGQAHIII 380
           +QHY    +  +   + V + TG   +          A++R+            + HI++
Sbjct: 316 EQHYLNFLRLCEPLGLRVSLRTGARREDSSALPLFENAVQRVPGNDGIDPLPDSEPHILV 375

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTHAL  +   + +L L ++DEQH+FGV QR +L  +  AP VL+MTATPIPRTL +T  
Sbjct: 376 GTHALLYEGAGFTRLGLAVIDEQHKFGVLQRARLRNQGVAPDVLVMTATPIPRTLTMTLY 435

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           GD+D+S + E PA R  I T +    ++ + ++ L+  L  G++AY + P I+E ++   
Sbjct: 436 GDLDVSTLDELPAHRGKIVTGVRDAAKLPDAVKFLREHLEAGRQAYVVYPLIDESEKLEA 495

Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           ++    F    E       A++HGR++  +K+++M+ F+ G  K LIATTVIEVGIDV +
Sbjct: 496 KAAATEFAKWQEFLAPMPCALLHGRIAPEEKDAIMEKFRGGETKALIATTVIEVGIDVPN 555

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A+I++IENAE FGLAQLHQLRGR+GRG+  S CILL  P     +  +L +L+ T DGF 
Sbjct: 556 ANIMLIENAERFGLAQLHQLRGRIGRGQHKSYCILLRSPKAEAETAEKLRILEATSDGFE 615

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
           IAE DLK R  G+ILG  QSG+P   +  P     L+ +AR  A  +  +DP L     Q
Sbjct: 616 IAEADLKLRGPGDILGTAQSGLPPLKLGDPLADHELMRLARNAAFLLFERDPQLERPENQ 675

Query: 680 SIRILL 685
             R +L
Sbjct: 676 RFRRVL 681


>gi|23013788|ref|ZP_00053646.1| COG1200: RecG-like helicase [Magnetospirillum magnetotacticum MS-1]
          Length = 484

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 185/464 (39%), Positives = 279/464 (60%), Gaps = 7/464 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFAP+++  G+G + +    +++        + +DLL++ P+  +DR + PK
Sbjct: 1   MRPQVLFPLFAPVTSLPGIGPRLAPLYQRLVG------EKVLDLLWHLPAGVVDRRFAPK 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           ++E    ++ T+T  +  H      KR PY++ + D TG + L+FF+ + + L+    EG
Sbjct: 55  VAEAPHGKVATLTLRVDAHYPSSSPKR-PYRVRMADETGFLHLVFFHGREDWLRKQLPEG 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+G ++   N I + HP +I    +      +E VY L  GL+     K +  A++
Sbjct: 114 EIRVVSGVVEHFNNEIQISHPDHIVRLEEIAQVMAVEPVYGLTAGLTGRAVAKTVAAAVA 173

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           + P LPEW E   L ++ +P   EA   +H+P         +PAR RLA+DELLA Q+AL
Sbjct: 174 KAPQLPEWQEPHWLVRQGWPGWHEALTAVHHPADEHSALGDTPARRRLAFDELLANQLAL 233

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++R Q +K  G  +  +G +  K+L  +P++ T +Q  ++ +I  DM+Q  RMLR+LQG
Sbjct: 234 AMVRAQMRKLKGRSLVGDGSLRAKVLAALPYTLTGAQSRSLAEIDADMAQPMRMLRLLQG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+AM  AVE G QA +MAP  ILA+QHY  I    +   + V ++TG   
Sbjct: 294 DVGSGKTIVALLAMLTAVETGAQAAMMAPTEILARQHYAGIAPLAEAAGLRVALLTGRDK 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R   L  +A G+ HI++GTHALFQ+ + +  L L ++DEQHRFGV QRL+L  K  A
Sbjct: 354 GKSREAVLAGLASGEIHILLGTHALFQEDVAFKDLALAVIDEQHRFGVHQRLELAAKGVA 413

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
             +L+MTATPIPRTL+LT+ GD+D S++ EKP GRKPI T ++P
Sbjct: 414 VDMLVMTATPIPRTLLLTAYGDMDASRLDEKPPGRKPIDTRVVP 457


>gi|38233726|ref|NP_939493.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199987|emb|CAE49656.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae]
          Length = 704

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 232/668 (34%), Positives = 354/668 (52%), Gaps = 52/668 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEE-RIVTITGYI-SQHSSFQLQKRRPYKILLNDGTGE 100
           DLL + P  +   H     +E +EE  I+T  G I   H          Y ++++DG   
Sbjct: 33  DLLQHFPRGYA-AHGTGLAAEAAEEGDIITCVGTIVDTHEHPDRNGYSIYSVVISDGFTR 91

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
            T  FF  +   +K V   G +   TGK+K  +N   + HP +     +         + 
Sbjct: 92  STATFF--RATWIKKVLTHGAQGIFTGKLKFFRNTPQLQHPDFFLFPEKGKKATGTGGMQ 149

Query: 161 SLPTGLSVDLFKKIIVEALSRLPV------LPEW---------------IEKDL--LQKK 197
           +L T   +D    I+V A+S LPV      +P W               I   L      
Sbjct: 150 ALSTTGELDDITDILV-AMSYLPVYPAKKAIPTWRILGAVHNILTHTPHIADPLHEFAPH 208

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN- 256
             PS  +A   IH P +     + +    R+ YDE L   + + L R   ++    PI  
Sbjct: 209 DLPSFDQALRGIHEPDEHGPQHYIT----RIKYDEALTLALVMALRRADTQRRHAYPIPP 264

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
               +   +L ++PF  T+ Q + + +I  D++Q   M R+LQG+VGSGKT+V+L+AM  
Sbjct: 265 TNDGLRAHMLSHLPFELTEGQHNVLTEISADLAQPTPMSRLLQGEVGSGKTIVSLLAMLQ 324

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHG 374
            ++ G Q V++AP  +LA QH   I +   N    I V ++TG++P   RRKAL  I  G
Sbjct: 325 VIDDGKQCVLLAPTEVLAAQHATSITQQLTNAGININVTLLTGSLPTEQRRKALFNIISG 384

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPI 431
            A++IIGTHAL Q+ I+++ L L ++DEQHRFGV+QR  L  +      PHVL+MTATPI
Sbjct: 385 DANLIIGTHALIQEGIEFFDLALCVIDEQHRFGVEQRDHLRNQGRDTNTPHVLVMTATPI 444

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKVVLSEGKKAYWI 488
           PR++ +T+ GD+ +S + + P GR+PI + +I          + ER++  + +G + Y +
Sbjct: 445 PRSIAMTAFGDLSVSTLKQLPGGRRPIHSYVIDHQHTTWTTRMWERIREEIDKGHQIYIV 504

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP+I++        V E  + L     ++  IA++HG M   DK++ M +F  GT  +L+
Sbjct: 505 CPKIKDSG-----GVEETTHQLTTGILANYRIAMLHGAMHPEDKDTTMKAFAAGTIDVLV 559

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVGIDV +A++++I  +E+FG++QLHQLRGRVGRG   S C        +  ++ 
Sbjct: 560 ATTVIEVGIDVPNATVMLIRESENFGVSQLHQLRGRVGRGGNESICFFHTTAQPTTPAHN 619

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665
           R++ +  T DGF +AE DL  R EG ILG +QSG    +I+   +HD  L+E A  DA H
Sbjct: 620 RVTAVAATTDGFELAEIDLTYRHEGNILGTQQSGHTNRIIS--FIHDKDLIERANNDATH 677

Query: 666 ILTQDPDL 673
           I+T +P L
Sbjct: 678 IVTHNPQL 685


>gi|326776332|ref|ZP_08235597.1| ATP-dependent DNA helicase RecG [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656665|gb|EGE41511.1| ATP-dependent DNA helicase RecG [Streptomyces cf. griseus
           XylebKG-1]
          Length = 735

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 225/692 (32%), Positives = 366/692 (52%), Gaps = 76/692 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100
           DLL ++P  + +R     ++++  +  VT+   ++      F   + +  ++ L DG+G 
Sbjct: 34  DLLHHYPRRYEERGRLTALADLPLDEHVTVVAQVADARILMFNNGRGKRLEVTLTDGSGR 93

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-------- 152
           + L+FF             GR+    GK+     ++ + HP Y   ++ D +        
Sbjct: 94  LQLVFFGHGVHKPHKELLPGRQAMFAGKVSVFNRKMQLAHPTYQLLDASDADEATEAVDA 153

Query: 153 --------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
                   +P  + + S     +VD       +A+  LP         L + + F S+ E
Sbjct: 154 FAGRLLPIYPACKQLDSWRIAKAVDAVLPSARDAVDPLPA-------SLREGRGFTSLPE 206

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
           A    H P+   D E    AR RL +DE    Q+AL   R+++  +  +P      +A  
Sbjct: 207 ALLKAHRPQTKADIE---DARARLKWDEAFVLQVAL--ARRRYA-DTQLPAAARRPVADG 260

Query: 265 IL----RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +L      +PF+ T+ Q+   K+I   ++ ++ M R+LQG+VGSGKT+VAL AM A V+A
Sbjct: 261 LLDAFDAKLPFTLTEGQQKVSKEIFDGLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDA 320

Query: 321 GGQAVIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKA 367
           GGQA ++AP  +LAQQH+  I +                 T+++  ++TG+M  A RR+A
Sbjct: 321 GGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDHGTKVV--LLTGSMGTAARRQA 378

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLM 426
           L  +  G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR  L  K    PH+L+M
Sbjct: 379 LLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVM 438

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEG 482
           TATPIPRT+ +T  GD++ S + + PAGR PI + ++P       +    ER++  +  G
Sbjct: 439 TATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKDKPHFLARAWERVREEVENG 498

Query: 483 KKAYWICPQI------------------EEKKESNFRSVVERFNSLHEHFTSSIAI--IH 522
            +AY +CP+I                  E+  +    +V+E  + L +   + + +  +H
Sbjct: 499 HQAYVVCPRIGDDAEEEKKGRAKKKAAEEDPDKRPPLAVLEIADELRKGALAGLGVEVLH 558

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GRM   +K+ VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGR
Sbjct: 559 GRMHPDEKDDVMRRFAAGDVHVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGR 618

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG     C+L+     +  +  RLS +  T DGF ++  DL+QR+EG++LG  QSG+ 
Sbjct: 619 VGRGSAPGLCLLVSEAHEASPARARLSAVAATLDGFELSRIDLEQRREGDVLGQAQSGVR 678

Query: 643 KFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673
             L     + D  ++  AR++A  I+  DP+L
Sbjct: 679 SSLRMLTVIDDEEVIAAAREEAVAIVAADPEL 710


>gi|194466496|ref|ZP_03072483.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri 100-23]
 gi|194453532|gb|EDX42429.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri 100-23]
          Length = 678

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 230/667 (34%), Positives = 367/667 (55%), Gaps = 22/667 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEI 64
           +  L   ++  +GVG K      ++ +          DLL Y+P+ + D  + P  I   
Sbjct: 1   MRSLTDSVANLKGVGPK------RVADLATLGIDTIEDLLTYYPTRYND--FTPTDIESA 52

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKI 123
            +++ +T+ G +           R  ++      G E+ +  F+ +  + K +    +++
Sbjct: 53  KDKQKITLQGVVVSEPLLVRYGYRRNRLTFRMQVGNEVVIATFFNQPYIKKQIELN-QQV 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           TV GK    + ++       +   + D N     AVY++   +  ++ +  I +A     
Sbjct: 112 TVIGKWDAPRRQV--TGNKLLKEKADDRNE--FGAVYAVNKHIRQNVLQSFIRQAYEEYA 167

Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            ++P ++ + + Q+       +    IH P+          AR   AY+E    Q+ L  
Sbjct: 168 NIIPTYLPETIRQRYRLMDRRQMIREIHFPQTQA---TAKAARRTAAYEEFFLFQLRLQA 224

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  ++E G  I       ++ +  +PF  T +Q+  + +I +DM Q  +M R+LQGDV
Sbjct: 225 IRRAHRQEDGERILYHNDELKEFIGGLPFELTDAQKRVVNEICRDMRQPYQMNRLLQGDV 284

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA IA+ AA+ AG QA +MAP  ILA QH E + K  + T + V ++TG++   
Sbjct: 285 GSGKTIVAAIAIYAAITAGYQAALMAPTEILAGQHAEKLAKIFEGTHVQVALLTGSLTAK 344

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
             R+ L  +  G  ++I+GTHAL QD ++Y  L LVI DEQHRFGV QR +L +K   P 
Sbjct: 345 QHRELLRAMKRGDVNLIVGTHALIQDGVEYANLGLVITDEQHRFGVNQRQQLREKGEHPD 404

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL +T+ G++D+S I + PAGRKPI+T  +  N+    I  L+  L +G
Sbjct: 405 VLAMTATPIPRTLAITNYGEMDVSIIDQLPAGRKPIQTKWLQSNQHAAAIHFLREQLKQG 464

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540
            +AY + P IEE    + ++  + +N L      +  + ++HGRM   +K+  M  FK+G
Sbjct: 465 AQAYVVSPLIEESAALDVQNATDLYNQLSADLEPAYKVGLLHGRMGTEEKDEAMRQFKSG 524

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+D  +A++++I +A+ FGLAQLHQLRGRVGRG   S C+L+  P  
Sbjct: 525 ELQVLVATTVIEVGVDNPNATVMVIYDADRFGLAQLHQLRGRVGRGNRQSYCLLIADPKT 584

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            +    R+  +  T+DGF IAE+DLK R  G++LG KQSGMP+F +  P     +L+IAR
Sbjct: 585 DEGK-ARMKTMVATDDGFKIAEQDLKLRGSGDVLGKKQSGMPEFKVGDPVADLKMLQIAR 643

Query: 661 KDAKHIL 667
            DA ++L
Sbjct: 644 ADAGNLL 650


>gi|254383283|ref|ZP_04998636.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
 gi|194342181|gb|EDX23147.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
          Length = 738

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 225/691 (32%), Positives = 371/691 (53%), Gaps = 66/691 (9%)

Query: 42  IDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYISQHS--SFQLQKRRPYKILLNDG 97
           +DLL ++P  + +R     ++E+++  +  VT+   ++     +F   + +  ++ + DG
Sbjct: 40  LDLLHHYPRKYAERGELTALTELADQLDEHVTVVAQVADARILTFNGGRGKRLEVTITDG 99

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVN--- 152
            G + L+FF             G +    GK+     ++ + HP Y  +  ++ D +   
Sbjct: 100 NGRLQLVFFGAGVHKPHKELLPGTRAMFAGKVGMFNRKLQLSHPAYEPLGADASDQDAAT 159

Query: 153 ---------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                    +P    + S      VD       E +  LP         L + +    + 
Sbjct: 160 AFAGRLIPIYPACAKLESWKIAKCVDAVLPSARETVDPLP-------PALREGRGLVPLT 212

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIA 262
           EA   IH P    D E    AR+RL +DE    Q+AL   R+   +   +P   V G + 
Sbjct: 213 EALLKIHRPATKADVE---DARQRLKWDEAFVLQVALARRRRADSQLPAVPRRPVPGGLL 269

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
                 +PF+ T+ Q++  K+I  D++ ++ M R+LQG+VGSGKT+VAL AM A V+ GG
Sbjct: 270 DAFDAKLPFTLTEGQQTVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDCGG 329

Query: 323 QAVIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKALE 369
           QA ++AP  +LAQQH+  I +               Q T+++  ++TG+M    RRKAL 
Sbjct: 330 QAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDQGTKVV--LLTGSMGMPARRKALL 387

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTA 428
            +  G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR  L  K    PH+L+MTA
Sbjct: 388 DLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTA 447

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKK 484
           TPIPRT+ +T  GD++ S + + PAGR PI T ++P       +    ER++  + +G +
Sbjct: 448 TPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAKDKPHFLARAWERVREEVGKGHQ 507

Query: 485 AYWICPQIEEKKESNFR--------------SVVERFNSLHEHFTS--SIAIIHGRMSDI 528
           AY +CP+I +++ ++ +              +V+E  + L     +  S+ ++HGRM   
Sbjct: 508 AYVVCPRIGDEETADPKKKSAEADGDKRPPLAVLEIADELRGGALAGLSVEVLHGRMDPA 567

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           DK+ VM  F  G  K+L+ATTVIEVG++V ++++++I +A+ FG++QLHQLRGRVGRG  
Sbjct: 568 DKDDVMRRFAAGEVKVLVATTVIEVGVNVPNSTVMVIMDADRFGVSQLHQLRGRVGRGSA 627

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
              C+L+     +  +  RL+ +  T DGF ++  DL+QR+EG++LG  QSG+   L   
Sbjct: 628 PGLCLLVSEMHEASPARARLAAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRML 687

Query: 649 PELHD-SLLEIARKDAKHILTQDPDLTSVRG 678
             + D  ++  AR++A  ++  DP+L  + G
Sbjct: 688 AVIDDEEVIAQAREEATRVVADDPELERLPG 718


>gi|229491419|ref|ZP_04385243.1| ATP-dependent DNA helicase RecG [Rhodococcus erythropolis SK121]
 gi|229321704|gb|EEN87501.1| ATP-dependent DNA helicase RecG [Rhodococcus erythropolis SK121]
          Length = 753

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 238/732 (32%), Positives = 387/732 (52%), Gaps = 88/732 (12%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
           R +GKK +  L +      A E R + DLL ++P  +          E  E   +TI   
Sbjct: 10  RLLGKKTADALDE------AFEIRTVEDLLRHYPHRYASAGKELAEKEPPEGEHITIIAR 63

Query: 76  ISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
           ++  +  ++ K RP ++L   L   +  + + FF    + +++V   G +   +G +K  
Sbjct: 64  VASAAVVKM-KNRPGQMLRVSLATDSQTVDVTFF--NPQKVRHVIKPGVRAMFSGTVKYF 120

Query: 133 KNRIIMVHPHYIFH-----NSQDVNFPLIE----------AVYSLPTGLSVDL--FKKII 175
           + +  + HP Y+         +D   PL            A  +   G  +DL  F + +
Sbjct: 121 RGKWSLTHPSYLILPEPRVGEEDSVVPLASIKGAGDLAGLARANQDPGAELDLSVFDRAL 180

Query: 176 V-------------------EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
           +                   + L +L  + E +  +   +  F  + EA   +H P   +
Sbjct: 181 IPLYPATREVESWTIMRCVRQVLDQLDPIEEPLPAETRAEHGFIGLDEALRTVHLPDTKE 240

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN--VEGKIAQKILRNIPFSPT 274
           D E    A++RL +DE L+ Q+ +L MR+    E   P    V G IA +    +PF+ T
Sbjct: 241 DIER---AQDRLRFDEALSLQL-VLAMRRHDNSERVAPACAPVAGGIADQFEEMLPFTLT 296

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + Q++  ++I  D+++ + M R+LQG+VGSGKT+VAL AM   V+AG Q  ++AP  +LA
Sbjct: 297 EGQQAVAEEISTDLARPHPMSRLLQGEVGSGKTIVALRAMLQVVDAGYQCALLAPTEVLA 356

Query: 335 QQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            QH   ++K            +      + ++TG++P A +R AL     G A I+IGTH
Sbjct: 357 NQHARSLRKMMGSLAAGGELGSAEHSTRIALLTGSLPVAAKRAALLEAVTGDAGIVIGTH 416

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSL 440
           AL QD+++++ L +V+VDEQHRFGV+QR +L  +A    +PH+L+MTATPIPRT+ +T L
Sbjct: 417 ALIQDNVEFFNLGMVVVDEQHRFGVEQRDQLRSRAREGLSPHLLVMTATPIPRTIAMTVL 476

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICP------ 490
           GD+++S + E P GR PIK+ ++P  +    +D   ER++  +++G++AY +C       
Sbjct: 477 GDLEVSTLRELPRGRTPIKSSVVPAKQKPQWVDRAWERIREDVADGRQAYVVCSRIGDGE 536

Query: 491 ------QIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
                 Q  E+K+   +S V+ F  L     +   + ++HGR+   +K+ VM +F  G  
Sbjct: 537 QGAGEDQFTEEKQPETKSAVDVFEELSSGPLADLRVGLLHGRLPSDEKDVVMSAFNVGDI 596

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ TTV+EVG+DV +A++++I +AE FG++QLHQLRGRVGRG+    CIL+       
Sbjct: 597 DVLVCTTVVEVGVDVPNATVMVIVDAERFGVSQLHQLRGRVGRGKHQGLCILVTGSNPGG 656

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARK 661
            +Y RLS +  T DGF +A+ DL  R+EG+ILG  QSG    L +     H  +LE AR+
Sbjct: 657 PAYERLSAVAATNDGFELAQLDLATRREGDILGAAQSGTTSNLRLLSLMAHGDILESARE 716

Query: 662 DAKHILTQDPDL 673
            A+ I+  DP L
Sbjct: 717 FAQGIVDSDPSL 728


>gi|73662852|ref|YP_301633.1| ATP-dependent DNA helicase RecG [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495367|dbj|BAE18688.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 681

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 217/660 (32%), Positives = 368/660 (55%), Gaps = 21/660 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS  +G+G K    L+++      N     DL+ Y P+ + D      ++E  ++ IVT
Sbjct: 12  PLSQIKGLGPKRLAVLNEL------NIHTVEDLILYLPTRYEDNTV-IDLNEAEDQAIVT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITVTGKIK 130
           + G +    +     R   K+ ++    +I +   F+ +  + K +   G  +TV GK  
Sbjct: 65  VVGEVYSTPTVAFFGRNKSKLTVHIMVDQIAVKCTFFNQPYLKKKIELHG-TVTVKGKWN 123

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           + K  I   + + +F + Q       E VY +  G+     + +I + L ++ +  EW+ 
Sbjct: 124 RAKQEI---NGNRMFFSQQMDESGQYEPVYRIKEGIKQKPLRDMIRQVLDQVTI-QEWLS 179

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKK 249
           +DL +K    ++ +    +H    A D      AR   A+ EL   ++ +  L R +   
Sbjct: 180 EDLRKKYKLETLEDTIKALHF---ATDKASLLKARRTYAFTELFMFELRMQWLNRLEKTS 236

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           +  I ++ +  + +  + ++PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT+V
Sbjct: 237 DEAIDVDYDINLVKHFIDSLPFELTDAQKHSVNEIFRDLKAPIRMHRLLQGDVGSGKTVV 296

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A I M A   AG Q+ +M P  ILA+QH E +     + ++ V ++TG++    R+  LE
Sbjct: 297 AAICMYALKTAGYQSALMVPTEILAEQHAESLVDLFGD-RMNVALLTGSVKGKKRKLLLE 355

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           ++ + +   IIGTHAL QD +++  + LVI DEQHRFGV QR  L +K    +VL MTAT
Sbjct: 356 QLNNNEIDCIIGTHALIQDDVKFNNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTAT 415

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL ++  G++D+S I + P GRKPI T        + V+ ++   L +G++AY IC
Sbjct: 416 PIPRTLAISVFGEMDVSSIKQLPKGRKPIITSWSKHEAYESVLNQMTSELKKGRQAYVIC 475

Query: 490 PQIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           P IE  +   + ++VVE + SL  ++    + ++HG++   +K+ VM  F N    +L++
Sbjct: 476 PLIESSEHLEDVQNVVELYESLQSYYGVEKVGLLHGKLHSDEKDEVMQRFSNHEIDILVS 535

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E+ S C+L+  P  ++    R
Sbjct: 536 TTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEQQSYCVLIASPK-TETGIER 594

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           ++++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 595 MNIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYKMLEVARDEAAELI 654


>gi|302525016|ref|ZP_07277358.1| ATP-dependent DNA helicase RecG [Streptomyces sp. AA4]
 gi|302433911|gb|EFL05727.1| ATP-dependent DNA helicase RecG [Streptomyces sp. AA4]
          Length = 717

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 225/676 (33%), Positives = 366/676 (54%), Gaps = 49/676 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100
           DLL ++P  + +R     I+ +      T+   I + S  +++ R      +++ DG   
Sbjct: 31  DLLRHYPRRYAERGELTDIAGLELGEHATVLARIEKISKRRMKSRNGTILDMVITDGKRR 90

Query: 101 ITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ------DV 151
           +   FF   +R+ E+       G+     GK+   ++ + + +P Y   +++      D 
Sbjct: 91  LACAFFNQAWREKELAP-----GKTGLFAGKVTAFRDTLQLANPEYELLDAEREAEAVDN 145

Query: 152 NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
               I  VY    G+      K + + L  L V  + + +DL ++   P +  A   IH 
Sbjct: 146 FLAEIIPVYPAAQGMPTWSIAKCVRQVLDVLEVGEDPMPEDLRKRHGLPGLERALRGIHR 205

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIP 270
           P   +D+     +R RL +DE +A Q+     R     +      +V+G +     + +P
Sbjct: 206 P---EDWAHLESSRHRLKWDEAMAVQLIFAQRRHSAVSRPAKASPHVDGGLLDAFDKRLP 262

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q +   +I  D+S ++ M R+LQG+VGSGKT+VAL AM   V++G QA ++AP 
Sbjct: 263 FDLTAGQRAIGDEIAADLSTEHPMNRLLQGEVGSGKTVVALRAMLQVVDSGRQAAMLAPT 322

Query: 331 GILAQQHYEFIKKY------------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            +LA QH   +++              +N   I  ++TG+M    R+KAL     G+A I
Sbjct: 323 EVLAAQHARSLREMLGDLGRAGELGAAENATRIT-LLTGSMGAKERKKALLETVSGEAGI 381

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK---ATAPHVLLMTATPIPRTL 435
           ++GTHAL QD++Q+  L LV+VDEQHRFGV+QR  L  +   +T+PHVL+MTATPIPRT+
Sbjct: 382 VVGTHALIQDTVQFADLGLVVVDEQHRFGVEQRDALRSRGADSTSPHVLVMTATPIPRTV 441

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQ 491
            +T  GD++IS + E P GR PIKT ++P+       D V +R+   + +G +AY +CP+
Sbjct: 442 AMTVYGDLEISALREMPVGRSPIKTTVVPVAEKPAWFDRVWQRVSEEVGKGHQAYVVCPR 501

Query: 492 IEEKKESNFR------SVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           I ++  S+        +V++    L         IA +HGRM   +K++VM +F  G  +
Sbjct: 502 IGDEPPSDKSDKRPPLAVLDVAPDLANGALKGLKIAALHGRMPTDEKDAVMQAFGAGKVE 561

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ATTV+EVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG     C+L+       +
Sbjct: 562 VLVATTVVEVGVNVPNATAMVILDADRFGVSQLHQLRGRVGRGSVPGLCLLVTETLDGTS 621

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662
           +  RL+ +++T DGF ++  DL+ R+EG+ILG  QSG    L     L D  L+  AR  
Sbjct: 622 TRERLAAVESTTDGFELSRLDLELRREGDILGAAQSGKRSGLKLLSLLRDEDLITEARAQ 681

Query: 663 AKHILTQDPDLTSVRG 678
           A+ ++T DP+L S+ G
Sbjct: 682 AQELVTGDPELVSLPG 697


>gi|271969202|ref|YP_003343398.1| ATP-dependent DNA helicase RecG [Streptosporangium roseum DSM
           43021]
 gi|270512377|gb|ACZ90655.1| ATP-dependent DNA helicase RecG [Streptosporangium roseum DSM
           43021]
          Length = 723

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 226/672 (33%), Positives = 370/672 (55%), Gaps = 43/672 (6%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGT-G 99
           DLL ++P  + +R     + ++  +  VT+ G +++     ++ +     ++ + DG   
Sbjct: 31  DLLRHYPRRYAERGELTDLDDLQVDEHVTVVGEVTRAMRKPMRNKGGTWLEVEVVDGRRS 90

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL----KNRIIMVHPHY-IFHNSQDVNFP 154
           +I L FF + + + ++    G +    GK+       K R  + HP + +F  ++     
Sbjct: 91  KIYLSFFGKTSHIAESRLRPGARGMFAGKVGAFGQGDKRRWQLSHPEFEMFDETEAGAEE 150

Query: 155 LIEAVYSL-PTGLSVDLF--KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
              A+  + P G  V  +  ++ +   L  +  L + +  +L  +   P +AEA   +H 
Sbjct: 151 FAAALVPIYPAGKDVTPWAIRRALGVVLDTMGPLDDPLPAELRARHKLPGLAEALLAVHR 210

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-IAQKILRNIP 270
           PR   D    + AR+RL +DE    Q  LL  R         P    G  +     R +P
Sbjct: 211 PRDHGDV---TRARKRLKFDEAFLLQAVLLQRRMAAASWPATPRPPRGDGLLADFDRRLP 267

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T+ Q+S  +++  D++  + M R+LQG+VG+GKT+VAL AM   V+AGGQAV++AP 
Sbjct: 268 FRLTEGQQSVGEEVSADLALAHPMHRLLQGEVGAGKTVVALRAMLQVVDAGGQAVLLAPT 327

Query: 331 GILAQQHYEFIKKYTQN-------TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +LAQQH+  I     +          +V ++TG++  A RR A+   A G A I++GTH
Sbjct: 328 EVLAQQHHRSISAMLGDLAAGGMFGGTVVALLTGSLGAAARRSAMLDAASGAAGIVVGTH 387

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLG 441
           A+ Q+ +Q+  L LV+VDEQHRFGV+QR  L +KA    PHVL+MTATPIPRT+ +T  G
Sbjct: 388 AVLQERVQFADLGLVVVDEQHRFGVEQRDALREKAGGGRPHVLVMTATPIPRTVAMTVFG 447

Query: 442 DIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEE--- 494
           D+ +S +++ P+GR PI T ++P       +D    RL+  +  G++AY +CP+I +   
Sbjct: 448 DLTVSTLSQLPSGRAPITTHVVPAAEKPHFLDRTWTRLREEVGLGRQAYIVCPRIGDLEG 507

Query: 495 -----KKESNFR----SVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543
                 K+ + R    +V++    L E     +  A++HG++   +K++VM +F  G   
Sbjct: 508 DEGDLSKDDDERRPPLAVLDVAQMLSEGPLHGLRTAVLHGKLPPEEKDAVMRAFTRGETD 567

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +++ATTVIEVG+DV ++S+++I +A+ FG++QLHQLRGRVGRG     C+L+   P    
Sbjct: 568 VMVATTVIEVGVDVPNSSVMVIMDADRFGVSQLHQLRGRVGRGGLPGLCLLVTDSPGGTP 627

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662
           +  RL  +  T DGF ++  DL+QR+EG++LG+ QSG    L     L D  ++  AR+D
Sbjct: 628 ARQRLDAVAATLDGFELSRVDLEQRREGDVLGVAQSGRRSSLKLLQLLRDEDVIHAARQD 687

Query: 663 AKHILTQDPDLT 674
           A+ +LT DPDL 
Sbjct: 688 AEAMLTADPDLA 699


>gi|89891409|ref|ZP_01202915.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium BBFL7]
 gi|89516440|gb|EAS19101.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium BBFL7]
          Length = 701

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 244/701 (34%), Positives = 375/701 (53%), Gaps = 31/701 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE-IS 65
           N L  P+    GVG   +  L   +       + + DL    P+ +ID+    KI+E + 
Sbjct: 4   NFLHTPIDYLNGVGPARAKLLKAELGI-----STYGDLANLFPNRYIDKTKYYKINELVP 58

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           +   V I G ++   +    +         DGTG + L++F +  +  K+         V
Sbjct: 59  DSAHVQIVGKVTHLKTMGDGRASRLIATFIDGTGSMELVWF-KGQKYFKDNLKLNEPYVV 117

Query: 126 TGKIKKLKNRIIMVHPHYIF---HNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            GK+ K  ++  + HP       H S  Q    P+  +   L      ++  K++V  + 
Sbjct: 118 YGKVSKYGSKYNIAHPDVELLKEHRSRQQSAMTPIYPSTEQLT---KRNVTNKMVVRMMQ 174

Query: 181 RL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           +L   V   + E    Q ++   + +    ++N    K       +  RL ++EL   Q+
Sbjct: 175 QLFSEVQNSFTETLSGQIRAQHQLVDKNTAMYNAHFPKSAALLQQSIYRLKFEELFFIQM 234

Query: 239 ALLLMRKQFKKEI-GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLR 296
            LLL  +  K  I G      G+       N +PF  T +Q+  +K+I  DM     M R
Sbjct: 235 ELLLQNRIRKSRIKGYAFEKVGEQFNDFYSNHLPFELTGAQKRVVKEIRADMGTGAHMNR 294

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VA++    A++ G QA IMAP  ILAQQH++ + +  +NT + V ++T
Sbjct: 295 LLQGDVGSGKTIVAILTCLLAIDNGFQACIMAPTEILAQQHFQGVSELLKNTGLQVALLT 354

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G++    RR     +  G  +I+IGTHAL +D + +  L + IVDEQHRFGV QR KL +
Sbjct: 355 GSVKTKARRVIHSDLEDGSLNILIGTHALIEDKVIFKNLGVAIVDEQHRFGVAQRAKLWK 414

Query: 417 KAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE----V 471
           K    PHVL+MTATPIPRTL ++  GD+DIS I E P GRK IKTV    +R D+    V
Sbjct: 415 KNNLPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKEIKTV----HRYDKNRLGV 470

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDI 528
              LK  +++G++ Y + P IEE +  +++ +++ + S+   F +    ++I+HGRM   
Sbjct: 471 FSFLKEEITKGRQVYMVYPLIEESETLDYKDLMDGYESVVREFPAPQYQVSIVHGRMKPE 530

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           DK+  M+ F  G  ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG +
Sbjct: 531 DKDYEMERFVKGETQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAD 590

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            S CIL+    LS  + TR+  +  T DGF IAE DLK R  G+++G +QSG+    +A 
Sbjct: 591 QSFCILMTSYKLSAEAKTRVETMVATTDGFEIAEVDLKLRGPGDMMGTRQSGVLALRVAD 650

Query: 649 PELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
               + +L IAR  A  +L +D  L      SI+ +L   Q
Sbjct: 651 IVKDNDILAIARNTAIDLLQKDATLELPEHASIKKVLQFLQ 691


>gi|319937588|ref|ZP_08011993.1| ATP-dependent DNA helicase [Coprobacillus sp. 29_1]
 gi|319807428|gb|EFW04037.1| ATP-dependent DNA helicase [Coprobacillus sp. 29_1]
          Length = 669

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 191/521 (36%), Positives = 317/521 (60%), Gaps = 19/521 (3%)

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRL-----PVLPEW--IEKDLLQKKSFPSIAEAFNI 208
           +  VYSL  GL+   F++ + +AL+ L       +PE   I+  L+ K+S      A   
Sbjct: 131 VHPVYSLKEGLTQKSFQQYVKKALNLLKGNIESFVPEEYIIKHQLIHKES------ALWN 184

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
           IH P+  +D +    A + L Y+E L  Q+ +  +++Q   E+GI    + +  Q  + +
Sbjct: 185 IHFPQSQEDIKQ---ALKYLKYEEFLKFQLTMQTIKQQRTLEVGIAKRFDVQKFQSFILS 241

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +P+  T+ Q++++K+I+ D+     M R LQGDVGSGKT+V+ +A+ A   AG Q  +MA
Sbjct: 242 LPYQLTQDQQTSVKEIVSDLQSPRMMYRFLQGDVGSGKTVVSSVALYANYLAGYQGALMA 301

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA QHY+ +  + ++T + + ++TG++    + +  E+I +G   +I+GTHALFQ 
Sbjct: 302 PTEILASQHYQTLLSFFKDTDVKIALLTGSLTNKEKERIYEQIQNGDIDMIVGTHALFQK 361

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++Y++L  VI DEQHRFGV+QR  L  K +    L+M+ATPIPRTL ++  GD+D+S +
Sbjct: 362 KVEYHRLGFVITDEQHRFGVEQRKALKNKGSQVDFLIMSATPIPRTLAISMYGDMDVSTM 421

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P GR P+ T  I  + +  +++ LK  L+ G + Y ICP +E+ +  + +S  +   
Sbjct: 422 KTMPKGRIPVVTKYIKSSSMKPILKDLKEYLASGGQCYVICPLVEDSEVLDAKSASQIAE 481

Query: 509 SLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           ++ ++F  T  + ++HG+M D +K+ +M  F+     +L++TTV+EVG+DV +A++++I 
Sbjct: 482 AMQQYFRGTYQVGLLHGQMKDDEKDRIMQDFQKQKIHILVSTTVVEVGVDVKNANMMVIY 541

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           NAE FG++QLHQLRGRVGRG + + C  +     SK +  RL  ++ + DGF I+  DL+
Sbjct: 542 NAERFGMSQLHQLRGRVGRGHQQAYCFFM-SSSTSKEAIERLKYMEKSHDGFEISMYDLQ 600

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            R  GE+LG +QSG+P FL+A       +L +AR+DA  I+
Sbjct: 601 IRGPGEVLGNRQSGLPTFLVADVFKDFPILNVAREDAMRIV 641


>gi|167586203|ref|ZP_02378591.1| ATP-dependent DNA helicase RecG [Burkholderia ubonensis Bu]
          Length = 450

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 189/427 (44%), Positives = 269/427 (62%), Gaps = 10/427 (2%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G +  ++   +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT+VA +A A A+
Sbjct: 8   GALTTRLYAALPFTLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAAAQAI 67

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           +AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A +
Sbjct: 68  DAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQL 127

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTAT 429
           +IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+AT
Sbjct: 128 VIGTHAIIQDAVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAQGFQPHQLMMSAT 187

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL +T   D+D+S I E P GR PI T ++   R +EVI R++     G++ YW+C
Sbjct: 188 PIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVGDARREEVIARVREAALTGRQVYWVC 247

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P IEE +    ++ VE + +L        + ++HGR+S  DK +VMD+F     +LL+AT
Sbjct: 248 PLIEESETLQLQTAVETYETLVAALPELKVGLVHGRLSTADKAAVMDAFTRNEVQLLVAT 307

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL
Sbjct: 308 TVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYSGPLSLAGRARL 367

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
             ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR+ A  ++ 
Sbjct: 368 KTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIEPAREAAARLIA 427

Query: 669 QDPDLTS 675
             PD+ +
Sbjct: 428 AYPDVVT 434


>gi|302670822|ref|YP_003830782.1| ATP-dependent DNA helicase RecG1 [Butyrivibrio proteoclasticus
           B316]
 gi|302395295|gb|ADL34200.1| ATP-dependent DNA helicase RecG1 [Butyrivibrio proteoclasticus
           B316]
          Length = 689

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 249/691 (36%), Positives = 376/691 (54%), Gaps = 52/691 (7%)

Query: 15  TFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERI---- 69
             +G+G+K +    K   CG     R + DLL Y+P  +       + S++   +I    
Sbjct: 12  NLKGIGEKTAKLFEK---CG----VRTVGDLLSYYPRCYDGYEIPVRASDVRPGQINSVK 64

Query: 70  VTITGYISQHSSFQLQKRRPYKILL-----NDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           +TI G I         KRR   + +      D TG+I + +F      L +    G    
Sbjct: 65  LTIIGSII--------KRRVRNLSIIAFEAADQTGKIKMTYF--NAPYLASSLKSGTTHI 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV---YSLPTGLSVDLFKKIIVEALSR 181
             G ++K  +   M  P      SQ+    L+  +   Y L  GL+ ++  K + +A   
Sbjct: 115 FRGMVQKKGSFYTMDQPKMY---SQEEYASLVGRLMPRYPLVKGLTNNIVIKAVEQAFLN 171

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +  L E++ + +L + S    +EA   IH P   K  E    AR RLAYDE L   +  L
Sbjct: 172 IGKLEEFVPQTILDRLSLIGYSEAARSIHFPENDKKLE---EARRRLAYDEFLL-FVLKL 227

Query: 242 LMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            + K  ++EI    P+ VE    +++L  +P+  T +Q  A KDI  D+   + M R++Q
Sbjct: 228 RLLKMTQEEISNSFPM-VEVSETKRLLEVLPYKLTNAQSLAWKDIQNDLQGPSVMNRLIQ 286

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEII 355
           GDVGSGKT++A++A+      G Q  +MAP  +LA QH+E     I KY  N Q +  I+
Sbjct: 287 GDVGSGKTVIAMLALLTTAANGYQGALMAPTEVLAAQHFENFKELIDKY--NIQHLKPIL 344

Query: 356 -TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
            TG +    +++A   I+ G+A+ IIGT+AL Q+ + Y  L LV+ DEQHRFGV+QR  L
Sbjct: 345 LTGALSAKDKKEAQRLISEGEANCIIGTNALIQEKVSYKNLALVVTDEQHRFGVRQREAL 404

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K    HVL M+ATPIPRTL +   GD+ IS I E P GR PIK  ++         + 
Sbjct: 405 AGKGLNTHVLAMSATPIPRTLAIILYGDLHISVINELPGGRLPIKNCVVGTEYRPTAYKF 464

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKES 532
           +K  +  G++AY ICP IEE +     +VV+   +L ++     S+A++HG+M    K+ 
Sbjct: 465 IKDQVEAGRQAYVICPMIEEGEMDGVTNVVDYTETLRQNLPPDISVAMLHGKMKPAQKDE 524

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M++F      +L++TTVIEVGI+V +A++++IENAE FGL+QLHQLRGRVGRG+  S C
Sbjct: 525 IMEAFARKDIDVLVSTTVIEVGINVPNATVMMIENAERFGLSQLHQLRGRVGRGKYQSYC 584

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           I L +   S ++  RL ++  T DGF IAEEDL+QR  G++ G++QSG   F +     H
Sbjct: 585 IFL-NTSESDDAKKRLDIMNKTNDGFKIAEEDLRQRGPGDLFGVRQSGDLNFRLGDI-YH 642

Query: 653 DS-LLEIARKDAKHILTQDPDLTSVRGQSIR 682
           DS L++ +  DA  IL++DP+L S +   +R
Sbjct: 643 DSDLVKESAMDADRILSEDPELLSTQYSVLR 673


>gi|317129245|ref|YP_004095527.1| ATP-dependent DNA helicase RecG [Bacillus cellulosilyticus DSM
           2522]
 gi|315474193|gb|ADU30796.1| ATP-dependent DNA helicase RecG [Bacillus cellulosilyticus DSM
           2522]
          Length = 678

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 232/655 (35%), Positives = 364/655 (55%), Gaps = 18/655 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+S   GVG +    + ++ N G     + I+ L   P  + D   R +++E   E  +T
Sbjct: 5   PVSKIHGVGPR---MVEQLENMGIETVQQLIEHL---PFRYEDHAVR-RVTEAEHEERIT 57

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +      +   +   ++ +      + L   +     LK     G  IT++GK  +
Sbjct: 58  VRGTVHSEPLLRFYGKNKSRLTVRVLVDGLLLQAVFFNQPYLKRQISLGEVITLSGKFDR 117

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIE 190
            +   +M+    +     +VN  L E VYS+   L +   +KII +A ++    + E + 
Sbjct: 118 HR---LMLSGGTLKTTENNVNEGL-EPVYSIRGNLKITALRKIIQQAFTQFEGQMEEILP 173

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             LL        AE  + +H P      E    A+ R+ Y+E L  Q+ + L RK+ ++ 
Sbjct: 174 SQLLTSYRLMGRAETIHQLHFP---TSIEKLKQAKRRMIYEEFLLFQLKMQLFRKKEREA 230

Query: 251 I-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           + G        + ++    +PF  T +Q   I +IL+D+  + RM R+LQGDVGSGKT+V
Sbjct: 231 VQGQKKFFSQNVIEEFKTKLPFPLTNAQLRVIDEILKDLQSEYRMNRLLQGDVGSGKTVV 290

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A  A+ A ++AG Q  +M P  ILA+QH E +    +   I V+++TG+     RR  LE
Sbjct: 291 AACALFAVIQAGLQGALMVPTEILAEQHKESLVDLLEPFGIKVQLLTGSTKVKERRAILE 350

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +  G+  II+GTHAL Q+ + +  L LVI DEQHRFGV+QR  L +K   P VL MTAT
Sbjct: 351 ELREGKIDIILGTHALIQEGVDFKNLGLVITDEQHRFGVEQRRILRKKGIRPDVLFMTAT 410

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL +++ GD+D+S I E P GR P+ T  +  + +  +I+ +   L+ GK+AY IC
Sbjct: 411 PIPRTLAISAFGDMDVSVIDEMPKGRLPVDTRWVKHDMLPRIIQFMDKQLNVGKQAYVIC 470

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P IEE ++ + ++ ++    L +      I ++HGR+S  +KESVM+ F      +L++T
Sbjct: 471 PLIEESEKLDVQNAIDVHLQLSQALPQYKIGLMHGRLSSDEKESVMNEFARNKVSVLVST 530

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+E S CILL  P  S     R+
Sbjct: 531 TVVEVGVNVPNATLMVIYDAERFGLAQLHQLRGRVGRGKEQSYCILLADPK-SDMGKERM 589

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
            ++ +T +GF ++E DL+ R  G+  G KQSG+PKF +A       +LE+AR+DA
Sbjct: 590 QIMVDTNNGFELSERDLELRGPGDFFGSKQSGLPKFKVADIVEDFKVLEVARQDA 644


>gi|187250617|ref|YP_001875099.1| ATP-dependent DNA helicase RecG [Elusimicrobium minutum Pei191]
 gi|186970777|gb|ACC97762.1| ATP-dependent DNA helicase RecG [Elusimicrobium minutum Pei191]
          Length = 691

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 234/655 (35%), Positives = 352/655 (53%), Gaps = 40/655 (6%)

Query: 43  DLLFYHPSSFIDRHYRPKI-SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE- 100
           D+L Y+P ++ DR  RP + +E   + +V   G +++  S   +    +K  L D  G  
Sbjct: 27  DILRYYPRTYQDR--RPGVLNEFCSQGLVVFLGRVARTQSIPAKSVHIFKAFLEDDKGNN 84

Query: 101 ITLLFFYRKTEM---------LKNVFFEGRKITVTGKIKKLKNRI---IMVHPHYIFHNS 148
           I   +F ++T           LK  F  G  + V GK +  ++ I   I V  +Y     
Sbjct: 85  IECTWFKKRTFFKARFDPMGSLKKDFKMGVWVWVIGKREDKESFISNKITVEEYYSADKQ 144

Query: 149 QD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--------LPVLPEWIEKDLLQKKSF 199
           +  ++   +  VYSL  GL+   F+  +  AL +        LPV        L++K+S 
Sbjct: 145 ESLIHVNRLTPVYSLTQGLTGKFFRTAVHFALEKYLFEEHESLPV-------SLVKKRSL 197

Query: 200 PSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
               +A   IH P    + +    AR+RL Y+E L    A  + ++Q   +     +++ 
Sbjct: 198 LGAKQALKAIHFPSNTPELD---AARKRLVYEEFLLLTSAWGIKKQQKTVQKNYTYHIKT 254

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            +      N+ F  T +Q+  I +I +DM     M R+LQGDVGSGKT VAL AM  AVE
Sbjct: 255 NLLTPFKNNLGFELTHAQKKVINEIFKDMQSTLPMTRLLQGDVGSGKTTVALSAMLLAVE 314

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              QA +MAP  ILA+QH+  I  + +   +   ++T ++    + K L  +A G+  I+
Sbjct: 315 NKFQAALMAPTEILAEQHFITITNFLKGLDVKTALLTSSVKGKTKEKLLADLAEGKIDIL 374

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTH++ +D++ +  L + +VDEQHRFGV+QR +L  KA    +L MTATPIPRTL L  
Sbjct: 375 VGTHSIIEDNVVFKNLKMTVVDEQHRFGVEQRTRLRNKAKEIDMLTMTATPIPRTLALAF 434

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
            GD+++S ITE P GRKPI T  I      E  ++ K  L +G++ Y + P IEE ++  
Sbjct: 435 YGDLEVSAITELPPGRKPITTFSITEG---EAYQKAKSELEKGRQVYIVYPLIEESEKLT 491

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++V E    +   F    + ++HG+M   +KE  M  FK+    +L+AT VIEVGIDV 
Sbjct: 492 VKAVKEDIEKIEGVFAPYKVGMLHGQMKRAEKEKAMADFKDKKTDVLVATPVIEVGIDVK 551

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++I++AE FGLA LHQLRGRVGRG E S C+L+ H  LS  S  R+ +L  T DGF
Sbjct: 552 NATVMVIQSAERFGLASLHQLRGRVGRGSEESFCLLVPH-NLSTVSKERIDILCQTTDGF 610

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            I E D++ R  GEILG +QSG  +F          +L+ A +D   +LTQDP L
Sbjct: 611 KIGERDMQLRGPGEILGTRQSGDFEFKAGDIFKDQEVLKWAIEDRDELLTQDPKL 665


>gi|160939091|ref|ZP_02086442.1| hypothetical protein CLOBOL_03985 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438054|gb|EDP15814.1| hypothetical protein CLOBOL_03985 [Clostridium bolteae ATCC
           BAA-613]
          Length = 685

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 219/672 (32%), Positives = 367/672 (54%), Gaps = 27/672 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS--EISEERI 69
           P+++ +G+G+K      K+            DLL Y+P ++    Y P +S  ++ E+ +
Sbjct: 6   PVNSLKGIGEKTGKLFEKL------GVVTIDDLLSYYPRAY--DAYEPPVSIGQLKEQAV 57

Query: 70  VTITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFF---YRKTEMLKNVFFEGRKITV 125
           + +   + + +   +L   +   + L D TG + + ++   Y +  +   V +  R    
Sbjct: 58  MAVESALVRGADLLRLGHMQIVSVQLKDLTGSLQVSWYNMPYMRANLKTGVTYVFR---- 113

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            G++ K + R++M  P     +S       ++ VY    GLS     +    AL    + 
Sbjct: 114 -GRVVKKRGRMVMEQPEVFTPDSYQALAGSMQPVYGQTRGLSNKTIVRAQQMALEMRKME 172

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E++  DL ++     I  A   IH P    +  +   AR+RL +DE     + +  +++
Sbjct: 173 REYMPPDLRRRYELAEINYAMEHIHFPADQTELLF---ARKRLVFDEFFMFLVGVRRLKE 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             +      +  E +       ++P++ T +QE A++++  DM     M R++QGDVGSG
Sbjct: 230 HREDRHSAFMIKESEEVAAFQSSLPYALTGAQERALREVYGDMGSGLVMNRLIQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY--TQNTQIIVEIITGNMPQAH 363
           KT++A++A+  A   G Q  +M P  +LA+QH+E +      Q  + +  ++TG+M    
Sbjct: 290 KTIIAILALLEAAYNGYQGALMVPTEVLARQHFESMTGLFEKQGIEKVPVLVTGSMTAKE 349

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R A  +IA  +A IIIGTHAL Q+ + Y  L LVI DEQHRFGV QR  L+ K   PHV
Sbjct: 350 KRLAYAKIASHEADIIIGTHALIQEKVVYDNLALVITDEQHRFGVGQRELLSSKGQEPHV 409

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL +   GD+DIS I E PAGR+ IK  ++      +    ++  ++EG 
Sbjct: 410 LVMSATPIPRTLAIILYGDLDISVIDELPAGRQTIKNCVVDPGYRPKAYAFIERQVAEGH 469

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGT 541
           +AY ICP +EE +     +V++   +L +    S+ +  +HG++   +K ++M+ F  G 
Sbjct: 470 QAYVICPMVEESEMIEAENVLDYTKALRKALPPSVTVEYLHGKLKGKEKNAIMERFAAGE 529

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG++ S CI++ +    
Sbjct: 530 IHVLVSTTVIEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGKDQSYCIMV-NCSRD 588

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + +  RL +L  + DGF IA EDLK R  G+I G++QSG  +F +A      ++L+   +
Sbjct: 589 QGAGERLDILNRSNDGFYIASEDLKLRGPGDIFGLRQSGDMEFKLADIFTDANILKKVSE 648

Query: 662 DAKHILTQDPDL 673
           +   +L +DP L
Sbjct: 649 EVNRLLDEDPQL 660


>gi|167564023|ref|ZP_02356939.1| ATP-dependent DNA helicase RecG [Burkholderia oklahomensis EO147]
          Length = 450

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 189/426 (44%), Positives = 270/426 (63%), Gaps = 10/426 (2%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            ++ ++   +PF  T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++
Sbjct: 9   SLSARLYAALPFRLTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAID 68

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++
Sbjct: 69  AGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKEKRAALEAAALGTAQLV 128

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATP 430
           IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATP
Sbjct: 129 IGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATP 188

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP
Sbjct: 189 IPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCP 248

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATT
Sbjct: 249 LIEESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATT 308

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL 
Sbjct: 309 VIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGIAASVCVLIYSGPLSIAGRARLK 368

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR+ A  ++  
Sbjct: 369 TMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPAREAAARLIAG 428

Query: 670 DPDLTS 675
            PD+ +
Sbjct: 429 YPDVVA 434


>gi|167817316|ref|ZP_02448996.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei 91]
          Length = 444

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 188/417 (45%), Positives = 266/417 (63%), Gaps = 10/417 (2%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA +MA
Sbjct: 12  LPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAALMA 71

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTHA+ QD
Sbjct: 72  PTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHAMIQD 131

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLVLTS 439
           ++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL +T 
Sbjct: 132 TVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTLAMTY 191

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE +   
Sbjct: 192 YADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEESETLQ 251

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEVG+DV 
Sbjct: 252 LQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVGVDVP 311

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ T DGF
Sbjct: 312 NASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRETTDGF 371

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++ +
Sbjct: 372 EIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVVA 428


>gi|331083798|ref|ZP_08332907.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403223|gb|EGG82783.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 685

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 228/696 (32%), Positives = 367/696 (52%), Gaps = 47/696 (6%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERIVT 71
           +   +G+G+K    L+K+        T   D L Y+P  + D +  P  +S+++  +   
Sbjct: 7   IRNIKGIGEKTEKLLAKL------GITTVGDFLRYYPREY-DEYTEPVGVSQVTAGKKCA 59

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTE------------MLKNVFFE 119
           + G I+     +              TG +T++    K E             L+N    
Sbjct: 60  VMGRITGKVGVR-------------NTGRLTIVTATLKEENSFLQLTWYNMPFLRNTLRS 106

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G      G +     R  M  P              +  +Y L  GL+  L  K I + L
Sbjct: 107 GGFYIFRGMVTDKNGRKTMEQPEIFKREDYKALLHSLYPIYGLTKGLTNKLMVKTIHQIL 166

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
               ++ E++ ++            A + IH P+  KD         RL +DE L   ++
Sbjct: 167 ENKEIVQEYLPEEYRNYYQLAEYNYAVSHIHFPKDKKDLLL---GHHRLVFDEFLLFILS 223

Query: 240 LLLMRKQFKKEIGIPINVEGKI---AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + +M+++ +    +P +   K     + ++  +P+  T +Q+    +I +DM+    M R
Sbjct: 224 IRMMKEKTQD---MPNSFAIKPVWETENVIDGLPYPLTNAQKRVWNEIERDMTGHTLMSR 280

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE--I 354
           ++QGDVGSGKT++A +AM  A   G Q+ +M P  +LA+QH++ ++K  +  Q+ ++  +
Sbjct: 281 LVQGDVGSGKTIMAFLAMLLAAFNGYQSALMVPTEVLAKQHFKEMEKLLKEHQLPLKAVL 340

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+     +R+   +IA G+A +IIGTHAL Q+ ++Y  L LVI DEQHRFGVQQR  L
Sbjct: 341 LTGSNTAKEKRERCAQIASGEAKLIIGTHALIQEKVEYENLALVITDEQHRFGVQQREDL 400

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
           ++K T PHVL+M+ATPIPRTL +   GD+DIS + E PA R PIK  ++  +        
Sbjct: 401 SKKGTRPHVLVMSATPIPRTLAIILYGDLDISVMDELPAKRLPIKNCVVDTSYRPRAYHF 460

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKES 532
           ++  + EG++ Y ICP +EE +  +  +V++    L E   S  S+A +HGRM   +K  
Sbjct: 461 IQKQVEEGRQVYVICPMVEESEGLDAENVIDYTQILKEALPSDISVAYLHGRMKAGEKNK 520

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M++F     ++L++TTVIEVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE  S C
Sbjct: 521 IMEAFAANEIQVLVSTTVIEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEHQSYC 580

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           I +        +  RL +L  + DGF IA EDL+ R  G+  GI+QSG+ +F IA     
Sbjct: 581 IFV-QGGQDTETKERLEILVKSNDGFQIAGEDLRLRGPGDFFGIRQSGLMEFKIADIYQD 639

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLY 688
             +L+ A + A  IL  DPDL+  + + +R  L+ Y
Sbjct: 640 AEILKEAGEAAGAILALDPDLSLPQHERLRDRLFSY 675


>gi|300858338|ref|YP_003783321.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300685792|gb|ADK28714.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302206056|gb|ADL10398.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
           C231]
 gi|302330607|gb|ADL20801.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
           1002]
 gi|308276292|gb|ADO26191.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis I19]
          Length = 704

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 233/674 (34%), Positives = 357/674 (52%), Gaps = 58/674 (8%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP------YKIL 93
           R  DLL + P ++             E  I+T  G I   S     +RR       Y + 
Sbjct: 30  RAEDLLMHLPRAYAAHGAGLSAGHAQEGDIITCIGDIVSTS-----ERRDRNGNLIYTVE 84

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           ++DG    T  FF  +   L  V  +G +   TGK+K  + +  + HP +          
Sbjct: 85  ISDGAVTTTATFF--RANWLSKVLVKGARGMFTGKLKFFREKSQLQHPDFFLFPDPGTKT 142

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEW----IEKDLLQK------- 196
                + +L T    D    II  +L+ +PV      +P W       ++L K       
Sbjct: 143 RSSGGLQALSTTGEFDHVTHII-NSLAYIPVYPAKKAMPTWRILGAIHEILSKTPPIVDP 201

Query: 197 ------KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
                    P++ +A    H      D E   P   RL Y+E L+  + + L R   K+ 
Sbjct: 202 LGNFKPDDMPTLDQAIRGAHE----TDCERAEPYINRLKYNEALSIALVMALRRADMKRR 257

Query: 251 IGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
              P+   +  +   +L+ +PF  T+ Q+   ++I +D+ +   M R+LQG+VGSGKT+V
Sbjct: 258 QAFPMPASQTGLRATLLKALPFQLTEGQQQVAQEIEEDLGKNTPMSRLLQGEVGSGKTIV 317

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY--TQNTQIIVEIITGNMPQAHRRKA 367
           +LIAM  AV+A  Q  ++AP  +LA QH   I+      N Q+ V ++TG++  A R+KA
Sbjct: 318 SLIAMLQAVDAHKQCALLAPTEVLATQHAHSIRATLAAANIQLTVVLLTGSLSTAERKKA 377

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVL 424
           L  I  G A IIIGTHAL QD++ +Y L L +VDEQHRFGV+QR  L  K  +   PH+L
Sbjct: 378 LLDIMSGDADIIIGTHALIQDTVNFYDLGLCVVDEQHRFGVEQRDYLRAKGNSELTPHLL 437

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSE 481
           +MTATPIPRT+ +T+ GD+ +S + + P GR+PIKT +I  +     + + +R++  +  
Sbjct: 438 VMTATPIPRTIAMTAFGDLSVSTLRQLPGGRRPIKTFVISSDNPTWSERMWKRIREEVER 497

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKN 539
           G++ Y +CP+++     N   V E   SL     S   + ++HG M   DKE++M +F  
Sbjct: 498 GQQIYVVCPRVK-----NNGGVEETTASLQHGIFSDLRVEMLHGSMHPDDKETIMAAFAT 552

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GT  +L+ATTVIEVGIDV +A+I++I  AE+FG++QLHQLRGRVGRG + S C L     
Sbjct: 553 GTIDVLVATTVIEVGIDVPNATIMLIREAENFGVSQLHQLRGRVGRGGKESICFLHTTAE 612

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
               +  R+  +  T DGF +AE DL+ R+EG+ILG +QSG  +  I+  +   +L++ A
Sbjct: 613 PDTPARQRIQKVAATADGFALAEIDLEYRQEGDILGTQQSGASQKRISFIQ-DKALIQRA 671

Query: 660 RKDAKHILTQDPDL 673
             DA  I+ Q+P++
Sbjct: 672 NDDAAAIVQQNPNI 685


>gi|182417252|ref|ZP_02948605.1| ATP-dependent DNA helicase RecG [Clostridium butyricum 5521]
 gi|237667623|ref|ZP_04527607.1| ATP-dependent DNA helicase RecG [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182378898|gb|EDT76411.1| ATP-dependent DNA helicase RecG [Clostridium butyricum 5521]
 gi|237655971|gb|EEP53527.1| ATP-dependent DNA helicase RecG [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 677

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 243/676 (35%), Positives = 380/676 (56%), Gaps = 40/676 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66
           +++ +ST +GVG K +    K+  CG  N    +D+L Y P    FI+ +   +  +  E
Sbjct: 3   IYSSISTLKGVGPKAT---EKLNRCGIFN---ILDILLYFPRDYDFIEGNVEFETID-GE 55

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLND-----GTGEITLLFFYRKTEMLKNVFFEGR 121
           E+++     + +  +F+   R     LL       G  ++T  +F +    +KN F +G 
Sbjct: 56  EKLI----LLCEAKAFKRDVRTKNGKLLTTIDFQYGEHKVTAKWFNQP--YVKNNFQKGS 109

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  + GK K++ N + +V P  +    + ++  ++   Y L   +S  LF+K+I   L++
Sbjct: 110 QYNLMGKFKRVGNMLEIVGP--VIACGEAISNEIVPK-YPLKGDISNKLFEKLINTILAQ 166

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           + +  E + +D+L K    S+  A   IH P      E    A+ RL + EL    + LL
Sbjct: 167 MNI-KENLPQDILDKYKLVSLDSAIRSIHFPENKDMLE---KAKTRLKFQELFTYSLKLL 222

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L++ Q KK     I  E     K+ + ++PF  T +Q   ++DIL+D   +  M R++QG
Sbjct: 223 LLKYQLKKNSN-GIKFEWVDELKVFKESLPFPLTNAQTKVVRDILRDQKSQCPMNRLIQG 281

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VALIA+   ++   Q+V+MAP  ILA QHYE  KK      I +E++TG   
Sbjct: 282 DVGSGKTIVALIAIFNVIKNNYQSVLMAPTEILATQHYEEAKKVYSQFNIEIELLTGGTS 341

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++  ERI   +  ++IGTHALFQ+ +++ +L L+I DEQHRFGV+QR +L  K   
Sbjct: 342 IKEKKRIKERIRGNEPILVIGTHALFQEDVEFGRLGLIITDEQHRFGVEQRSRLMNKGNK 401

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              ++MTATPIPRTL L    D+D+S I E P GRK I T     ++ D   E     + 
Sbjct: 402 ADCIVMTATPIPRTLALYLYSDLDVSVIDELPPGRKKIDTRYYEDSKRDIAYELAYDEIK 461

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------AIIHGRMSDIDKESVM 534
           +G++ Y +CP IEE ++    SV     +L+E  TS+I       I+HG+M   +K+ ++
Sbjct: 462 KGRQVYIVCPLIEEDEKEQLNSV----ETLYEKLTSTIFKNLRVEILHGKMKGNEKDDII 517

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FKN    +LI+TTVIEVG++V +AS++I+ENAE FGLAQLHQLRGRVGRG+  S C+L
Sbjct: 518 KRFKNHESDVLISTTVIEVGVNVPNASVMIVENAERFGLAQLHQLRGRVGRGQYESYCVL 577

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +     S  +  R+ ++  + DGFLI+E+DLK R  GE+ G KQSG   F +A      +
Sbjct: 578 IAKAK-SNITKKRMMIMTESSDGFLISEQDLKLRGAGEMFGRKQSGDAGFALANLYEDIN 636

Query: 655 LLEIARKDAKHILTQD 670
           +L  A+++A +I+  D
Sbjct: 637 ILRCAKQEAVNIIKDD 652


>gi|325972732|ref|YP_004248923.1| ATP-dependent DNA helicase RecG [Spirochaeta sp. Buddy]
 gi|324027970|gb|ADY14729.1| ATP-dependent DNA helicase RecG [Spirochaeta sp. Buddy]
          Length = 695

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 232/693 (33%), Positives = 361/693 (52%), Gaps = 23/693 (3%)

Query: 4   SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
           +++  L  P++   GVG       +  +  G +    + DLL   P ++ DR     +  
Sbjct: 2   AYVRGLKQPITELSGVGPAAK---AAYLELGIST---YSDLLLLSPRTWEDRSEVHPLGG 55

Query: 64  ISEERIVTITGYISQHSSFQLQ--KRRPYKILLND----GTGEITLLFFYRKTEMLKNVF 117
           + + ++      +  HS F L+  K+R  KIL+ D    G G ++LL F R    L+   
Sbjct: 56  LEDAQMANTLVEVLSHSYFGLKAGKKRTLKILVRDVSGLGDGRLSLLCFGRN--FLEKTI 113

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP----LIEAVYSLPTGLSVDLFKK 173
             GR   + G + + +  +       ++  ++D +FP     I  +Y L   LS  L + 
Sbjct: 114 KVGRIYYLYGSVNRNRGEL-QCSQFELYPATEDGDFPKQFGQILPIYPLRGSLSQRLIRT 172

Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            +   L+ +    + +   + +     S  +A    H P      E    A   LA  EL
Sbjct: 173 NMKAVLASVDTFEDEMTASMRENYHLLSTDQAIRAYHFP---PSVEVLHQAHRTLALTEL 229

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
              Q+     +   ++      ++  K+  K +  +PFS T  Q +++ +I QD+     
Sbjct: 230 FYLQLVARRHKSLQQRSTRTGPSIPTKLELKCIETLPFSLTGDQITSLTEIRQDLDSDMP 289

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKTLVA I+    +   GQ   MAP  +LA+QH E      +   I + 
Sbjct: 290 MNRLLQGDVGSGKTLVAWISALHVLSQKGQVAFMAPTELLARQHAESGAALLEKLGIRLA 349

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            +TG++    RR  LE I  G+  IIIGTHALF   + +  L  VI+DEQHRFGV+QRL 
Sbjct: 350 FLTGSVKNKERRLLLEAIKGGEVDIIIGTHALFSAEVAFRNLRYVIIDEQHRFGVEQRLA 409

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L +KA  P +LLMTATPIPRTL LT  G++++S +   PAGRKP+ T ++       + +
Sbjct: 410 LLEKAQVPDLLLMTATPIPRTLSLTVFGNLNVSTLRTMPAGRKPVITHLVNEQSRKRMYQ 469

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTSSIAIIHGRMSDIDKES 532
            + V    G +AY++ P+I++  ES+ R V   +  L +E+ T   A+IH ++ + +K  
Sbjct: 470 AVGVEFQRGHQAYFVYPRIDDSGESDLRDVNNMYEFLKNEYPTVPSALIHSKLDEEEKVH 529

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           ++  ++ G    L++T+V+EVGID+ +A+ ++IE+A+ FGL+ LHQLRGRVGR    S C
Sbjct: 530 ILKEYQGGRIAYLVSTSVVEVGIDIPNATCMVIEHADRFGLSALHQLRGRVGRSVLQSYC 589

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            L++   L+  +  RL V+K + DGF IAE+DL  R  GE+ G +QSG  K + A     
Sbjct: 590 FLVFGDELTDEAKQRLKVMKESNDGFYIAEQDLLIRGPGELTGTRQSGYLKLIYASLTDD 649

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
             L+EIAR +A HIL  DP L  V  + IR  L
Sbjct: 650 LPLIEIARNEADHILESDPGLLQVEHEPIRATL 682


>gi|167721134|ref|ZP_02404370.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei
           DM98]
 gi|167825726|ref|ZP_02457197.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei 9]
          Length = 433

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 188/417 (45%), Positives = 266/417 (63%), Gaps = 10/417 (2%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA +MA
Sbjct: 1   MPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAALMA 60

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTHA+ QD
Sbjct: 61  PTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHAMIQD 120

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLVLTS 439
           ++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL +T 
Sbjct: 121 TVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTLAMTY 180

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE +   
Sbjct: 181 YADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEESETLQ 240

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEVG+DV 
Sbjct: 241 LQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVGVDVP 300

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ T DGF
Sbjct: 301 NASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRETTDGF 360

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++ +
Sbjct: 361 EIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVVA 417


>gi|262037471|ref|ZP_06010931.1| ATP-dependent DNA helicase RecG [Leptotrichia goodfellowii F0264]
 gi|261748506|gb|EEY35885.1| ATP-dependent DNA helicase RecG [Leptotrichia goodfellowii F0264]
          Length = 691

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 245/657 (37%), Positives = 364/657 (55%), Gaps = 32/657 (4%)

Query: 7   NPLFAPLSTFR--GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           N LF  L  F+  GVGK   + L+K    G        DL ++ P ++ D+     ISEI
Sbjct: 5   NLLFKSLEEFKIKGVGK---VALNKFNKLGVYT---LYDLFYFFPRAYEDKANSKNISEI 58

Query: 65  SEERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
             E  V I G +    +  ++  R  ++ +L D TG I L++F      +KN    G ++
Sbjct: 59  LPEEFVAIKGTVVNAVNQYIKSGRTMFRAMLRDETGIIELVWF--NNRFIKNSIKIGDEL 116

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQ-----DVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            V GK+K+   +  MV+P Y    S      +     I  +Y     L  +  +KI+ EA
Sbjct: 117 QVYGKVKRAA-KFQMVNPEYKKIQSDGMIRGEARHEQILPIYPSTASLRQEAIRKIVNEA 175

Query: 179 LSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L     +L E I +DLL+K S  S  EA   IH P + +       A++R   +E+L  +
Sbjct: 176 LLDYGYLLQENIPEDLLKKGSLISRKEAILNIHFPEEFE---KKEKAKKRFMIEEILLLE 232

Query: 238 IALLLMRKQFKKEIGIPINVEG--KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L  R +  KE      +E   K+  K + ++ +  TK+Q+  I +I +++     + 
Sbjct: 233 MGILQNRFEMDKENNNIYELEDNKKLVSKFIESLEYELTKAQKKVISEIYKELKSGKIVN 292

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VALI +    E   Q VIMAP  ILA QHY  I     +  + VE++
Sbjct: 293 RLIQGDVGSGKTIVALIMLLYMAENSYQGVIMAPTEILATQHYLGIVDIFNDLDVRVELL 352

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R K L  I +G   I+IGTHAL ++ + +  L L+++DEQHRFGV QR  L 
Sbjct: 353 TGSVKGKKREKLLSEIENGLVDIVIGTHALIENDVVFKNLGLIVIDEQHRFGVVQRKLLR 412

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII----PINRIDEV 471
           +K +  ++++M+ATPIPR+L LT  GD+D+S I E P+GR PIKT  I      N++   
Sbjct: 413 EKGSIANLIVMSATPIPRSLALTIYGDLDVSIIDELPSGRMPIKTKWIRDLDEKNKMYNF 472

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
           IER    + EG++ Y + P IEE +  N +S  + F    E F++  + +IHGR +  +K
Sbjct: 473 IER---KIKEGRQVYVVSPLIEESETLNVKSAQQTFEEYSEIFSNRRLGLIHGRQNYKEK 529

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + VM  FK     +LI+TTVIEVG++V +ASI++I +A+ FGL+ LHQLRGRVGRG+  S
Sbjct: 530 QEVMRKFKKHEIDILISTTVIEVGVNVPNASIMVIRDAQRFGLSSLHQLRGRVGRGKYQS 589

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
            C L      +  S  RL V++ T DGF IAEEDLK R  GEILG +QSG+   ++ 
Sbjct: 590 YCFLESETD-NDLSMKRLQVMEKTTDGFKIAEEDLKLRNSGEILGTRQSGVSDMVLT 645


>gi|184153750|ref|YP_001842091.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri JCM 1112]
 gi|227363189|ref|ZP_03847323.1| DNA helicase RecG [Lactobacillus reuteri MM2-3]
 gi|325682706|ref|ZP_08162222.1| DNA helicase RecG [Lactobacillus reuteri MM4-1A]
 gi|183225094|dbj|BAG25611.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri JCM 1112]
 gi|227071795|gb|EEI10084.1| DNA helicase RecG [Lactobacillus reuteri MM2-3]
 gi|324977056|gb|EGC14007.1| DNA helicase RecG [Lactobacillus reuteri MM4-1A]
          Length = 690

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 230/667 (34%), Positives = 367/667 (55%), Gaps = 22/667 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEI 64
           L  L   ++  +GVG K      ++ +          DLL Y+P+ + D  + P  I   
Sbjct: 13  LRSLTDSVANLKGVGPK------RVADLATLGIDTIEDLLTYYPTRYND--FTPTDIESA 64

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKI 123
            +++ +T+ G +           R  ++      G E+ +  F+ +  + K +    +++
Sbjct: 65  KDKQKITLQGVVVSEPLLVRYGYRRNRLTFRMQVGNEVVIATFFNQPYIKKQIELN-QQV 123

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           TV GK    + ++       +   + D N     AVY++   +  ++ +  I +A     
Sbjct: 124 TVMGKWDAPRRQV--TGNKLLKEKADDRNE--FGAVYAVNKHIRQNVLQSFIRQAYEEYA 179

Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            ++P ++ + + Q+       +    IH P+          AR   AY+E    Q+ L  
Sbjct: 180 NIIPTYLPETIRQRYRLMDRRQMIREIHFPQTQA---TAKAARRTAAYEEFFLFQLRLQA 236

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  ++E G  I       ++ +  +PF  T +Q+  + +I +DM Q  +M R+LQGDV
Sbjct: 237 IRRAHRQEDGERILYHNDELKEFIGGLPFELTDAQKRVVNEICRDMRQPYQMNRLLQGDV 296

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA IA+ AA+ AG QA +MAP  ILA QH + + K  + T + V ++TG++   
Sbjct: 297 GSGKTIVAAIAIYAAITAGYQAALMAPTEILAGQHAKKLAKIFEGTHVQVALLTGSLTAK 356

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
             R+ L  +  G  ++I+GTHAL QD ++Y  L LVI DEQHRFGV QR +L +K   P 
Sbjct: 357 QHRELLTAMKRGDVNLIVGTHALIQDGVEYANLGLVITDEQHRFGVNQRQQLREKGEHPD 416

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL +T+ G++D+S I + PAGRKPI+T  +  N+    I  L+  L +G
Sbjct: 417 VLAMTATPIPRTLAITNYGEMDVSIIDQLPAGRKPIQTKWLQSNQHAAAIHFLREQLKQG 476

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540
            +AY + P IEE    + ++  + +N L      +  + ++HGRM   +K+  M  FK+G
Sbjct: 477 AQAYVVSPLIEESAALDVQNATDLYNQLSADLEPAYKVGLLHGRMGTEEKDEAMRQFKSG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+D  +A++++I +A+ FGLAQLHQLRGRVGRG   S C+L+  P  
Sbjct: 537 ELQVLVATTVIEVGVDNPNATVMVIYDADRFGLAQLHQLRGRVGRGSRQSYCLLIADPKT 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            +    R+  +  T+DGF IAE+DLK R  G++LG KQSGMP+F +  P     +L+IAR
Sbjct: 597 DEGK-ARMKTMVATDDGFKIAEQDLKLRGSGDVLGKKQSGMPEFKVGDPVADLKMLQIAR 655

Query: 661 KDAKHIL 667
            DA ++L
Sbjct: 656 ADAGNLL 662


>gi|167847212|ref|ZP_02472720.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei
           B7210]
          Length = 442

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 188/417 (45%), Positives = 266/417 (63%), Gaps = 10/417 (2%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA +MA
Sbjct: 10  LPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAALMA 69

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTHA+ QD
Sbjct: 70  PTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHAMIQD 129

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLVLTS 439
           ++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL +T 
Sbjct: 130 TVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTLAMTY 189

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE +   
Sbjct: 190 YADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEESETLQ 249

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEVG+DV 
Sbjct: 250 LQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVGVDVP 309

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ T DGF
Sbjct: 310 NASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRETTDGF 369

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++ +
Sbjct: 370 EIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVVA 426


>gi|47570289|ref|ZP_00240938.1| ATP-dependent DNA helicase RecG [Bacillus cereus G9241]
 gi|47553053|gb|EAL11455.1| ATP-dependent DNA helicase RecG [Bacillus cereus G9241]
          Length = 527

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 197/502 (39%), Positives = 311/502 (61%), Gaps = 18/502 (3%)

Query: 171 FKKIIVEAL-----SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225
            ++ I +AL     S + VLP+ +   L + K  P   EA   +H P   +D +    AR
Sbjct: 1   MRRFIAQALKEYGDSIVEVLPDGL---LSRYKLLPRY-EALRALHFPTGQEDLK---QAR 53

Query: 226 ERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
            R  Y+E    Q+ +  +RK + +   G    +  +  Q+ +  +PF  T +Q   + +I
Sbjct: 54  RRFVYEEFFLFQLKMQTLRKMERENSKGTKKEIPSEELQEFIDALPFPLTGAQRRVVDEI 113

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
           ++DM+   RM R+LQGDVGSGKT+VA I + AA  A  Q  +M P  ILA+QHY+ + + 
Sbjct: 114 MKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAET 173

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
             +  + VE++T ++    RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQH
Sbjct: 174 FSHFGMKVELLTSSVKGVRRREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQH 233

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           RFGV QR  L +K  +P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T    
Sbjct: 234 RFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAK 293

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIH 522
            + +D V+  ++  + +G++AY ICP IEE ++ + ++ ++  + L  H+     + ++H
Sbjct: 294 HDMLDRVLGFVEKEIKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMH 353

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GR+S  +KE +M  F     ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGR
Sbjct: 354 GRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGR 413

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG E S C+L+  P  S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P
Sbjct: 414 VGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLP 472

Query: 643 KFLIAQPELHD-SLLEIARKDA 663
           +F +A   +HD   LE AR+DA
Sbjct: 473 EFKVADM-VHDYRALETARQDA 493


>gi|293402242|ref|ZP_06646380.1| ATP-dependent DNA helicase RecG [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304349|gb|EFE45600.1| ATP-dependent DNA helicase RecG [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 669

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 219/645 (33%), Positives = 363/645 (56%), Gaps = 23/645 (3%)

Query: 42  IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGT 98
           +DLL Y+P  +     +P+     E+RI      +++    +L+ ++    +K+L  +  
Sbjct: 25  MDLLTYYPFRYESVETKPRKEWQKEDRIALEGVILNRARVIRLKGKQSVTKFKLLYEEE- 83

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ +  F R      + F  G+ IT+  K +   +R+  +  ++     Q   FP    
Sbjct: 84  -ELDIAIFNRP---WISAFTVGKTITLIAKYEG-GSRMTALQYNFQPLQEQLGIFP---- 134

Query: 159 VYSLPTGLSVDLFKKIIVEA-LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VY++  G+S    +K I +A L++   + E++  + LQK    S ++A   IH+P   K+
Sbjct: 135 VYNVKEGISQKDIRKYIDKAWLAQQESIKEFLPMEYLQKYRLISRSQALYFIHHP---KN 191

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKS 276
            E    +   L Y+E L  QI +  ++ Q K+ + G     + +    + + + FS T+ 
Sbjct: 192 MEAVKQSLRHLKYEEFLKFQITMQALKAQEKEVVHGHEKRFDNEEVMDLQKTLAFSLTED 251

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   I++IL D+   + M R++QGDVG GKTLVA   M A V A  QA  +AP  ILA+Q
Sbjct: 252 QIKTIEEILADLKSDHIMYRMVQGDVGCGKTLVAAFGMYACVLAHKQAAFLAPTEILAKQ 311

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H   +KK   + +I VE++  ++    ++  LER+A  +  I++GTHALFQ+ ++++ L 
Sbjct: 312 HGNNLKKIFHDYEIQVEVLYASLKTQEKKDILERLARNEIDILVGTHALFQEGVEFHDLG 371

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           +V+ DEQHRFGV QR K+ +K      LLM+ATPIPRTL ++  GD+D+S I   P+GR+
Sbjct: 372 MVVADEQHRFGVAQRKKMLEKGDKVDFLLMSATPIPRTLAISLYGDMDVSTIQTLPSGRQ 431

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I T ++    +  +++ +   + EG + Y +CP IE+ ++   R+V + +  +      
Sbjct: 432 KITTKLVHARSMSSILDFVLEKIDEGNQCYVVCPAIEKNEDYEIRNVTDIYQGMQASLGR 491

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              I ++HG+MS  +K++VM +F  G  ++L++TTVIEVG+DV +A+I++I +A  FGL+
Sbjct: 492 RYQIGLLHGKMSAQEKDAVMKAFVEGDLQILVSTTVIEVGVDVANANIMVIYDAHRFGLS 551

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           Q+HQLRGRVGRG +   C LL       +S  RL V + T DGF IA  DL  R  G+IL
Sbjct: 552 QIHQLRGRVGRGSQPGYCFLLSDSK-DPDSLQRLKVCEKTNDGFAIARYDLALRGPGDIL 610

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT--QDPDLTSVR 677
           G +QSG+P F++       ++LE+AR+DA+ +L    DP    ++
Sbjct: 611 GTRQSGVPGFILGDVIQDANILEVAREDAQALLKHIHDPGYEQIK 655


>gi|167912445|ref|ZP_02499536.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei 112]
          Length = 438

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 188/417 (45%), Positives = 266/417 (63%), Gaps = 10/417 (2%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA +MA
Sbjct: 6   LPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAALMA 65

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTHA+ QD
Sbjct: 66  PTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHAMIQD 125

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLVLTS 439
           ++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL +T 
Sbjct: 126 TVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTLAMTY 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE +   
Sbjct: 186 YADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEESETLQ 245

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEVG+DV 
Sbjct: 246 LQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVGVDVP 305

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ T DGF
Sbjct: 306 NASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRETTDGF 365

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++ +
Sbjct: 366 EIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVVA 422


>gi|226305911|ref|YP_002765871.1| ATP-dependent DNA helicase RecG [Rhodococcus erythropolis PR4]
 gi|226185028|dbj|BAH33132.1| ATP-dependent DNA helicase RecG [Rhodococcus erythropolis PR4]
          Length = 758

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 241/748 (32%), Positives = 391/748 (52%), Gaps = 90/748 (12%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRP 59
           M    +  L  PL   R +GKK +  L +      A E R + DLL ++P  +       
Sbjct: 1   MLEELMATLADPLD--RLLGKKTADALDE------AFEIRTVEDLLRHYPHRYASAGKEL 52

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNV 116
              E  E   +TI   ++  +  ++ K RP ++L   L   +  + + FF    + +++V
Sbjct: 53  AEKEPPEGEHITIIARVASAAVVKM-KNRPGQMLRVSLATDSQTVDVTFF--NPQKVRHV 109

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFH-----NSQDVNFPLIE----------AVYS 161
              G +   +G +K  + +  + HP Y+         +D   PL            A  +
Sbjct: 110 IKPGVRAMFSGTVKYFRGKWSLTHPSYLILPEPRVGEEDSVVPLASIKGAGDLAGLARAN 169

Query: 162 LPTGLSVDL--FKKIIV-------------------EALSRLPVLPEWIEKDLLQKKSFP 200
              G  +DL  F + ++                   + L +L  + E +  +   +  F 
Sbjct: 170 QDPGAELDLSVFDRALIPLYPATREVESWTIMRCVRQVLDQLDPIEEPLPAETRAEHGFI 229

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN--VE 258
            + EA   +H P   +D E +   ++RL +DE L+ Q+ +L MR+    E   P    V 
Sbjct: 230 GLDEALRTVHLPDTKEDIERS---QDRLRFDEALSLQL-VLAMRRHDNSERVAPACAPVA 285

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G IA +    +PF+ T+ Q++  ++I  D+++ + M R+LQG+VGSGKT+VAL AM   V
Sbjct: 286 GGIADQFEEMLPFTLTEGQQAVAEEISSDLARPHPMSRLLQGEVGSGKTIVALRAMLQVV 345

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKA 367
           +AG Q  ++AP  +LA QH   ++K            +      + ++TG++P A +R A
Sbjct: 346 DAGYQCALLAPTEVLANQHARSLRKMMGPLAAGGELGSAEHSTRIALLTGSLPVAAKRAA 405

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVL 424
           L     G A I+IGTHAL QD+++++ L +V+VDEQHRFGV+QR +L  +A    +PH+L
Sbjct: 406 LLEAVTGDAGIVIGTHALIQDNVEFFNLGMVVVDEQHRFGVEQRDQLRSRAREGLSPHLL 465

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLS 480
           +MTATPIPRT+ +T LGD+++S + E P GR PIK+ ++P  +    +D   ER++  ++
Sbjct: 466 VMTATPIPRTIAMTVLGDLEVSTLRELPRGRTPIKSSVVPAKQKPQWVDRAWERIREDVA 525

Query: 481 EGKKAYWICP------------QIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMS 526
            G++AY +C             Q  E+K+   +S V+ F  L     +   + ++HGR+ 
Sbjct: 526 AGRQAYVVCSRIGDGEQGAGEDQFTEEKQPETKSAVDVFEELSSGPLADLRVGLLHGRLP 585

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM +F  G   +L+ TTV+EVG+DV +A++++I +AE FG++QLHQLRGRVGRG
Sbjct: 586 SDEKDVVMSAFNVGDIDVLVCTTVVEVGVDVPNATVMVIVDAERFGVSQLHQLRGRVGRG 645

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL- 645
           +    CIL+        +Y RLS +  T DGF +A+ DL  R+EG+ILG  QSG    L 
Sbjct: 646 KHQGLCILVTGSNPGGPAYERLSAVAATNDGFELAQLDLATRREGDILGAAQSGTTSNLR 705

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDL 673
           +     H  +LE AR+ A+ I+  DP L
Sbjct: 706 LLSLMAHGDILESAREFAQGIVDSDPSL 733


>gi|312984225|ref|ZP_07791571.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus CTV-05]
 gi|310894444|gb|EFQ43520.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus CTV-05]
          Length = 678

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 219/673 (32%), Positives = 368/673 (54%), Gaps = 26/673 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +  L      G+       DLLFY P  + +    P + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTTAAL------GSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56

Query: 67  ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + V + G ++     S F  +K R  +K+ ++    ++ ++ F+ +   LKN    G++
Sbjct: 57  GQKVMLKGIVATEAFVSRFGYKKTRLSFKMRIDH---DVIMVNFFNQP-WLKNKIEIGQE 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           + + GK    +  +      ++     D    P+      +     VDL    I + + +
Sbjct: 113 VAIYGKYNVARQSLTAFK--FVAAKENDSGMAPIYPVNRHVKQKKLVDLINVAIDDFIDQ 170

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +    + + + L Q+            +H+P+ + + E    A+    + E    ++ L 
Sbjct: 171 VQ---DIVSEKLRQEYRLLKDQVIIEKMHHPKNSHEAEL---AKRSAIFREFFIFELQLA 224

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L+ +   K++G     +     ++ +++PF  +  Q+  + +I  DM    +M R+LQGD
Sbjct: 225 LLTRNDGKQMGYAKKYDLTEIAQLTKSLPFELSDDQKHVVNEIFADMHSDGQMRRLLQGD 284

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   + V ++TGN   
Sbjct: 285 VGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKT 344

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R +    +  G  +++IGTHAL QDS+ + KL LVI+DEQHRFGV QR  L  K   P
Sbjct: 345 LERCEIYRELTDGTINVVIGTHALIQDSVIFKKLGLVIIDEQHRFGVGQRQALINKGDQP 404

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +     +++ EV  +++  L++
Sbjct: 405 DILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQLNQ 464

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G + Y + P I E +  + ++  E    L   F +  + ++HG+M    K+ +M +F  G
Sbjct: 465 GFQIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFAAG 524

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ L  P  
Sbjct: 525 EIDILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK- 583

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           + +   R+ ++ +T DGF +AEEDLK R EG++ G  QSG+P+F +     + + L +A+
Sbjct: 584 TDSGKARMKIIASTNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVAQ 643

Query: 661 KDAKHILTQDPDL 673
           K+A+ ++  DPDL
Sbjct: 644 KEARALVAADPDL 656


>gi|293376126|ref|ZP_06622374.1| ATP-dependent DNA helicase RecG [Turicibacter sanguinis PC909]
 gi|325841635|ref|ZP_08167412.1| ATP-dependent DNA helicase RecG [Turicibacter sp. HGF1]
 gi|292645253|gb|EFF63315.1| ATP-dependent DNA helicase RecG [Turicibacter sanguinis PC909]
 gi|325489913|gb|EGC92261.1| ATP-dependent DNA helicase RecG [Turicibacter sp. HGF1]
          Length = 681

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 226/639 (35%), Positives = 370/639 (57%), Gaps = 27/639 (4%)

Query: 43  DLLFYHPSSF-----IDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDG 97
           DLL Y P  +     ID H+     +I+ E  V IT    Q+   +++ R  + +L+N  
Sbjct: 32  DLLEYFPYRYENYELIDIHHAMHEEKITVEAKV-ITACSVQYYG-KMKARMSFNVLVNH- 88

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
             E+  +  + + + LKN       ITVTGK      R ++     I  +++      IE
Sbjct: 89  --EVVKVVVFNR-QFLKNQLKLDTLITVTGKWDL--GRKVITATDIIIGSAEGRG---IE 140

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
            VYSL   +    FKKI+  A  +   ++ + +  DL Q     S  +A +  H P   K
Sbjct: 141 PVYSLKE-IPTKTFKKIVKAAYEQFHSLINDDLPLDLQQSYRLISYKDAVSFAHFP---K 196

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTK 275
           + E       R+ Y+ELL  Q+ +  +R Q K E +G     +    ++ +  +PF  T+
Sbjct: 197 NKEQVRQVERRIKYEELLKFQLKIQYLRHQTKHEKVGANKCFDEMKVEQFIHQLPFQLTE 256

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q + + +I  D+    RM R+LQGDVGSGKT+VA +++   + AG Q  +M P  IL Q
Sbjct: 257 AQLTVLSEIKTDLMSPTRMNRLLQGDVGSGKTVVAAVSLFMTMLAGFQTALMVPTEILGQ 316

Query: 336 QHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           QHY+ F + ++   ++ +E ++ ++    RR+ LE++  G+ ++++GTHA+ Q  + +  
Sbjct: 317 QHYKSFCELFSPFKEVNIEFLSSSVKGKRRREILEKLRQGEINLLVGTHAIIQQEVVFQN 376

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L LVI DEQHRFGV QR  L +K     VL+MTATPIPRTL +++ GD+D+S IT+ P G
Sbjct: 377 LGLVITDEQHRFGVNQRKMLREKGEFVDVLMMTATPIPRTLAISAFGDMDVSTITQMPKG 436

Query: 455 RKPIKTVIIPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           RKP++T +I   ++D  +  ++  +LS+G++AY I P IEE +  + ++ VE ++    H
Sbjct: 437 RKPVETYLIDSGKLDRALNFIQDEILSKGQQAYVITPLIEESEAMDVQNAVEVYHLWQHH 496

Query: 514 FT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           F   + + ++HGR+S  +K++VMD F     ++LI+TTVIEVG++V +A++++I +A  F
Sbjct: 497 FQGRAKVGLMHGRLSQAEKDAVMDDFVANRSQILISTTVIEVGVNVPNANLMLIYDAHRF 556

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+QLHQLRGRVGRG E + C+L+     ++ S  RL+++  T +GF I+E DLK R  G
Sbjct: 557 GLSQLHQLRGRVGRGSEQAYCLLMSDIK-NEASLERLTIMTQTTNGFEISEADLKLRGPG 615

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           +  G KQSG+P F +A      ++L++A +DA  +++ D
Sbjct: 616 DFFGEKQSGVPVFKMADLVQDFNILQVAMQDAYRLVSSD 654


>gi|167920400|ref|ZP_02507491.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei
           BCC215]
          Length = 453

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 188/417 (45%), Positives = 266/417 (63%), Gaps = 10/417 (2%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA +MA
Sbjct: 21  LPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAALMA 80

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTHA+ QD
Sbjct: 81  PTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHAMIQD 140

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLVLTS 439
           ++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL +T 
Sbjct: 141 TVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTLAMTY 200

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE +   
Sbjct: 201 YADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEESETLQ 260

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEVG+DV 
Sbjct: 261 LQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVGVDVP 320

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ T DGF
Sbjct: 321 NASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRETTDGF 380

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++ +
Sbjct: 381 EIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVVA 437


>gi|260437137|ref|ZP_05790953.1| ATP-dependent DNA helicase RecG [Butyrivibrio crossotus DSM 2876]
 gi|292810449|gb|EFF69654.1| ATP-dependent DNA helicase RecG [Butyrivibrio crossotus DSM 2876]
          Length = 677

 Score =  357 bits (916), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 227/655 (34%), Positives = 359/655 (54%), Gaps = 31/655 (4%)

Query: 43  DLLFYHPSSFIDRHYRP-KISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGT 98
           DL+  +P ++ D +  P  I+ I E  I  +  Y +     +L++   YKIL   + D  
Sbjct: 27  DLMELYPRAY-DSYDEPVNIAAIDECGIYAV--YAAVDRPPELKQNGRYKILTVMVRDEA 83

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
           G +  + ++     L++    G +    GK+    + + M  P     +   +    ++ 
Sbjct: 84  GSMLRITWF-NMPFLRSRLRNGYRYIFRGKVAIKGSLVFMEQPSIYTVDEYYIRQSSMQP 142

Query: 159 VYSLPTGLSVDLFKKII---VEALSRLPVLPEWI--EKDLLQKKSFPSIAEAFNIIHNPR 213
           VY L  GL+ ++  K +    E+      LPEWI  + DL+ +K      +A   IH P 
Sbjct: 143 VYPLTAGLTNNMVIKAVKQCFESGGYEEFLPEWILTKNDLIDEK------KAHYAIHFP- 195

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
             KD    + AR+R+ +DE       +   +     E  +    E   A  +L+N+P+S 
Sbjct: 196 --KDRNELAQARKRIIFDEFFLFTTNIRCAKSARLNEDNLYRISESGEALHVLKNLPYSL 253

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q+    +IL DM     M R++QGDVGSGKT++A +AM     AG Q+++MAP  +L
Sbjct: 254 TGAQKKVYSEILNDMGSDKTMNRLIQGDVGSGKTILAFLAMINTAAAGWQSILMAPTEVL 313

Query: 334 AQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           A+QHYE +K+     ++     ++TG + +A +R A E+I  G+A  IIGTHAL  D ++
Sbjct: 314 ARQHYEALKELIDKNRLDFTCVLLTGALTEAKKRDAKEKITSGEADFIIGTHALITDDVE 373

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +    LVI DEQHRFGV+QR  L++K   PH+++M+ATPIPR+L +   GD+DIS + EK
Sbjct: 374 FKNPALVITDEQHRFGVRQRENLSRKGETPHIIVMSATPIPRSLAIILYGDLDISIVDEK 433

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK-KESNFRSVVERFNSL 510
           PA R P+K  ++  +   +  + +   + +G +AY IC   EE   +SN  +VV+    L
Sbjct: 434 PADRLPVKNCVVDDSYRTKAYKFISDEIKKGHQAYIICAMAEESDNDSNLENVVDFSKKL 493

Query: 511 HEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            E    + I  +HG+M   +K  +MD F      +L++TTV+EVGI+V +A+++++ NAE
Sbjct: 494 KEAMPETRIEYLHGKMKPAEKNRIMDEFAKRNTDILVSTTVVEVGINVPNATVMMVINAE 553

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQ 627
            FGLA LHQLRGRVGRG+E S CI   +   +KN  T  RL++LK + DGF I+E+DLK 
Sbjct: 554 RFGLAGLHQLRGRVGRGKEQSYCIFESN---TKNKVTKERLNILKESNDGFYISEQDLKL 610

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           R  G++LG +QSG   F I       S+L++A   +  ++ +D +L       IR
Sbjct: 611 RGPGDMLGTRQSGDMGFAIGNIYSDASILKMAADTSSILIEKDKELMLEENSGIR 665


>gi|24216644|ref|NP_714125.1| ATP-dependent DNA helicase RecG [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45658972|ref|YP_003058.1| ATP-dependent DNA helicase RecG [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24197981|gb|AAN51143.1| ATP-dependent DNA helicase RecG [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45602217|gb|AAS71695.1| ATP-dependent DNA helicase protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 724

 Score =  357 bits (916), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 225/700 (32%), Positives = 380/700 (54%), Gaps = 58/700 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P++  +GVG   +  L+ I            DLL + P  ++DR+    +   + 
Sbjct: 13  NGLLLPVTVIKGVGPSKAAALASI------GIDTLQDLLNFFPRRYLDRNLTDNVLLKTG 66

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGT--GEITLLFFYRKTEMLKNVFFEGRKIT 124
           E +  I   I  +    L   +  ++++   T   E   + F+R     + +F  G  + 
Sbjct: 67  ETVTLIVEVIDAY----LAHGKKSRLVVGTKTRNNERISIVFFRGVNFFQKIFQPGTTLV 122

Query: 125 VTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP------------------------LIEAV 159
            TGK++  +    ++HP Y I  ++    +P                        +I A 
Sbjct: 123 ATGKLEYFRG-FQLIHPDYEILTSAIKTTYPISSTGSKKKKQEQEPEEELSELPEMIHAG 181

Query: 160 YSLP----------TGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNI 208
             +P           GL    F+KI+  AL +L   +PE +  ++++++      E++  
Sbjct: 182 RIIPLYPSGEVLKSEGLDSRGFRKILYSALEKLKGKIPEILPNEIVKRRGLILREESYRE 241

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI--PINVEGKIAQKIL 266
           IH P      +    A+ RL Y+EL    + +   +K+ +K   +  P+  E + A K+ 
Sbjct: 242 IHFPTDENSLD---TAKYRLKYEELFYFNLLIEHKKKEREKIKRVLWPLP-ESETANKVR 297

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           +N+PF  T+ Q SA++ I +  +++  +  +LQGDVGSGKTLVAL+     ++   Q  +
Sbjct: 298 KNLPFQLTEDQNSALQKIKELTNKEQPIAVLLQGDVGSGKTLVALLTALRYIDNQIQVCM 357

Query: 327 MAPIGILAQQHYEFIKKYTQNTQII-VEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +AP  ILA+QHY+ I  +  N   + +E++ G  P+ +R + L RI  G    +IGTH++
Sbjct: 358 VAPTEILARQHYQTILSFLGNMPFLGIELLVGKEPKKNRYEKLYRIKKGDTLFVIGTHSV 417

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           FQ+ + + +L LVI+DEQH+FGV QR  L  K   P +L MTATPIPRTL LT  GD+D+
Sbjct: 418 FQEDVYFSELGLVIIDEQHKFGVDQRETLRSKGKNPDILAMTATPIPRTLCLTLYGDLDL 477

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
             I  KP GR PI+T     +R + + + ++  +S G++ Y + P +EE ++ + +S +E
Sbjct: 478 LTIKSKPKGRMPIQTKWFQEDRREGIYKSIRKYVSSGRQCYIVYPLVEESEKVDLKSCIE 537

Query: 506 RFNSL-HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +  L HE F    + ++HG+M   +K+ VM  F     ++L++TTVIEVGIDV +++++
Sbjct: 538 AYEYLKHEIFPDFEVGLVHGKMEVEEKDRVMREFSKNRIQILVSTTVIEVGIDVPNSTVM 597

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +IE+A+ FG++QLHQLRGRVGRG++ S CIL+    +++++  RL  + N  DGF ++E 
Sbjct: 598 VIEHADRFGISQLHQLRGRVGRGDQESFCILMTDSKVTEDAKVRLEAMVNFSDGFALSEI 657

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           DL+ R  GE++G++QSG+P F IA      +L+E+ R+DA
Sbjct: 658 DLQLRGPGELMGVRQSGLPDFKIADLRKDSNLIELTREDA 697


>gi|167895798|ref|ZP_02483200.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei
           7894]
          Length = 441

 Score =  357 bits (916), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 188/417 (45%), Positives = 266/417 (63%), Gaps = 10/417 (2%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA +MA
Sbjct: 9   LPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAALMA 68

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTHA+ QD
Sbjct: 69  PTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHAMIQD 128

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTATPIPRTLVLTS 439
           ++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL +T 
Sbjct: 129 TVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTLAMTY 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE +   
Sbjct: 189 YADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEESETLQ 248

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEVG+DV 
Sbjct: 249 LQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVGVDVP 308

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ T DGF
Sbjct: 309 NASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRETTDGF 368

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++ +
Sbjct: 369 EIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVVA 425


>gi|27464919|gb|AAO16243.1| ATP-dependent DNA helicase RecG [Staphylococcus capitis]
          Length = 682

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 220/663 (33%), Positives = 369/663 (55%), Gaps = 28/663 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L ++    N N     DL+ Y P+ + D      +++  ++  VT+
Sbjct: 13  LDKIKGIGPKRLTILEEL----NINTVE--DLVLYLPTRYEDNTV-IDLNQAEDQSTVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +    +     R   K+ ++     I + +  ++ T   K     G  +TV GK  +
Sbjct: 66  QGEVYSTPAVAFFGRNKSKLTVHIMVNNIAVKVCLFQSTLFKKENELHG-TVTVKGKWNR 124

Query: 132 LKNRIIMVHPHYIFHNSQ----DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
            K  I   + + +F N Q    DV    +E VY +  G+     +  I +AL  + +  E
Sbjct: 125 AKQEI---NGNRMFFNEQSPQDDVQ---LEPVYRIKEGIKQKQIRDNIRQALEDVTI-HE 177

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQ 246
           W+  DL +K    ++      +H+P   KD +    AR   A+ EL   ++ +  L R +
Sbjct: 178 WLSDDLREKYKLETLEYTLRTLHHP---KDKQSLLKARRTYAFTELFMFELRMQWLNRLE 234

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
              +  I I+ +    ++ +  +PF  T +Q++++ +I +D+    RM R+LQGDVGSGK
Sbjct: 235 KSSDEAIEIDYDISKVKQFINRLPFELTDAQKASVNEIFRDLKAPIRMHRLLQGDVGSGK 294

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA I M A   AG Q+ +M P  ILA+QH E + +   +T + V ++TG++    RR 
Sbjct: 295 TVVAAICMYALKTAGYQSALMVPTEILAEQHAESLMELFGDT-MNVALLTGSVKGKKRRI 353

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE++ +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL M
Sbjct: 354 LLEQLENGSIDCLIGTHALIQDDVVFENVGLVITDEQHRFGVNQRQMLREKGAMTNVLFM 413

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL ++  G++D+S I + P GRKPI T      + ++V+ ++   L +G++AY
Sbjct: 414 TATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITSWAKHEQYEQVLAQMTSELRKGRQAY 473

Query: 487 WICPQIEEKKE-SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP IE  +   + ++VV  + SL +++ +  + ++HG+++  +K+ VM  F +    +
Sbjct: 474 VICPLIESSEHLEDVQNVVALYESLQQYYGADKVGLLHGKLTPDEKDDVMQRFSDKEIDI 533

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++  
Sbjct: 534 LVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETG 592

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R++++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A 
Sbjct: 593 IERMTIMTQTSDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAA 652

Query: 665 HIL 667
            ++
Sbjct: 653 ELI 655


>gi|314933404|ref|ZP_07840769.1| ATP-dependent DNA helicase RecG [Staphylococcus caprae C87]
 gi|313653554|gb|EFS17311.1| ATP-dependent DNA helicase RecG [Staphylococcus caprae C87]
          Length = 682

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 219/663 (33%), Positives = 369/663 (55%), Gaps = 28/663 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L ++    N N     DL+ Y P+ + D      +++  ++  VT+
Sbjct: 13  LDKIKGIGPKRLTILEEL----NINTVE--DLVLYLPTRYEDNTV-IDLNQAEDQSTVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +    +     R   K+ ++     I +   F+ +  + K +   G  +TV GK  +
Sbjct: 66  QGEVYSTPAVAFFGRNKSKLTVHIMVNNIAVKCVFFNQPYLKKKIELHG-TVTVKGKWNR 124

Query: 132 LKNRIIMVHPHYIFHNSQ----DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
            K  I   + + +F N Q    DV    +E VY +  G+     +  I +AL  + +  E
Sbjct: 125 AKQEI---NGNRMFFNEQSPQDDVQ---LEPVYRIKEGIKQKQIRDNIRQALEDVTI-HE 177

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQ 246
           W+  DL +K    ++      +H+P   KD +    AR   A+ EL   ++ +  L R +
Sbjct: 178 WLSDDLREKYKLETLEYTLRTLHHP---KDKQSLLKARRTYAFTELFMFELRMQWLNRLE 234

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
              +  I I+ +    ++ +  +PF  T +Q++++ +I +D+    RM R+LQGDVGSGK
Sbjct: 235 KSSDEAIEIDYDISKVKQFINRLPFELTDAQKASVNEIFRDLKAPIRMHRLLQGDVGSGK 294

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA I M A   AG Q+ +M P  ILA+QH E + +   +T + V ++TG++    RR 
Sbjct: 295 TVVAAICMYALKTAGYQSALMVPTEILAEQHAESLMELFGDT-MNVALLTGSVKGKKRRI 353

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE++ +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL M
Sbjct: 354 LLEQLENGSIDCLIGTHALIQDDVVFENVGLVITDEQHRFGVNQRQMLREKGAMTNVLFM 413

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL ++  G++D+S I + P GRK I T      + ++V+ ++   L +G++AY
Sbjct: 414 TATPIPRTLAISVFGEMDVSSIKQLPKGRKSIITSWAKHEQYEQVLAQMTSELRKGRQAY 473

Query: 487 WICPQIEEKKE-SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP IE  +   + ++VV  + SL +++ +  + ++HG+++  +K+ VM  F +    +
Sbjct: 474 VICPLIESSEHLEDVQNVVALYESLQQYYGADKVGLLHGKLTPDEKDDVMQRFSDKEIDI 533

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++  
Sbjct: 534 LVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETG 592

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R++++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A 
Sbjct: 593 IERMTIMTQTSDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAA 652

Query: 665 HIL 667
            ++
Sbjct: 653 ELI 655


>gi|302537159|ref|ZP_07289501.1| ATP-dependent DNA helicase RecG [Streptomyces sp. C]
 gi|302446054|gb|EFL17870.1| ATP-dependent DNA helicase RecG [Streptomyces sp. C]
          Length = 735

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 235/719 (32%), Positives = 374/719 (52%), Gaps = 76/719 (10%)

Query: 42  IDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYISQ------HSSFQLQKRRPYKIL 93
           +DLL ++P  + +R     ++++++  +  VT+   ++       H S    KR   ++ 
Sbjct: 33  LDLLHHYPRRYAERGELTSLADLADQLDEHVTVVAQVADARLLTYHGSRGGGKR--LEVT 90

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---------- 143
           + DG+G + L+FF             G +    GK+ +  +++ + HP Y          
Sbjct: 91  ITDGSGRLQLVFFGAGVHKPHKELLPGSRAMFAGKVSRFNHKLQLAHPAYEPLGADASDR 150

Query: 144 ----IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSF 199
                F N     +P    + S      VD       EA+  LP         L + +  
Sbjct: 151 DAATAFANQLIPIYPACAKLESWKIAKCVDAVLPRAQEAVDPLP-------PALREGRGL 203

Query: 200 PSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE- 258
             + EA   IH P    D E    AR+RL +DE    Q+AL   R    +   +      
Sbjct: 204 VPLTEALLKIHRPATKADIE---DARQRLKWDEAFVLQVALARRRHADSQLPAVARRATP 260

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G +   +   +PF+ T  Q+   K+I  D++  + M R+LQG+VGSGKTLVAL AM A V
Sbjct: 261 GGLLDALDAKLPFTLTDGQQKVSKEIFDDLATSHPMHRLLQGEVGSGKTLVALRAMLAVV 320

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRR 365
           ++GGQA ++AP  +LAQQH+  I +               Q T+++  ++TG+M  A RR
Sbjct: 321 DSGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDQGTKVV--LLTGSMGTAARR 378

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVL 424
           +AL  +  G+A ++IGTHAL +D +Q++ L LV+VDEQHRFGV+QR  L  K    PH+L
Sbjct: 379 QALLDLVTGEAGLVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLL 438

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLS 480
           +MTATPIPRT+ +T  GD++ S + + PAGR PI T ++P       +    ER++  + 
Sbjct: 439 VMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPARDKPHFLSRAWERVREEVE 498

Query: 481 EGKKAYWICPQIEE-------KKESNFRSVVERFNSLH-----EHFTS------SIAIIH 522
            G +AY +CP+I +       KK+++     E+   L      E  T       S+ ++H
Sbjct: 499 NGHQAYVVCPRIGDGEDDPKNKKKASAEDEAEKRPPLAVLEIAEQLTRGPLAGLSVEVLH 558

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GRM   DK+ VM  F  G  K+L+ATTVIEVG++V ++++++I +A+ FG++QLHQLRGR
Sbjct: 559 GRMDPADKDDVMRRFAAGEVKVLVATTVIEVGVNVPNSTVMVIMDADRFGVSQLHQLRGR 618

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG     C+L+     +  +  RL+ +  T DGF ++  DL+QR+EG++LG  QSG+ 
Sbjct: 619 VGRGSAPGLCLLVSEMHEASPARARLAAVAATLDGFELSRIDLEQRREGDVLGQAQSGVR 678

Query: 643 KFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             L     + D  ++  AR++A  ++  DP+L  + G  +R  L      E  Q++  G
Sbjct: 679 SSLRMLAVIDDEEVIAQAREEATRVVAADPELEHLPG--LRTALDALLDAEREQYLEKG 735


>gi|110801740|ref|YP_699017.1| ATP-dependent DNA helicase RecG [Clostridium perfringens SM101]
 gi|110682241|gb|ABG85611.1| ATP-dependent DNA helicase RecG [Clostridium perfringens SM101]
          Length = 564

 Score =  357 bits (915), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 218/549 (39%), Positives = 334/549 (60%), Gaps = 18/549 (3%)

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK KK+ N + +++P       ++ N   I  +Y+L  GL+  +  K+I E L  + ++ 
Sbjct: 2   GKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINEILKNM-IIK 57

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + +++++K    S+ +A   IH P    + +    A  RL + EL    + +++M+  
Sbjct: 58  ENLPEEIVKKYKLISLDKAIRNIHFPVGRGELQ---SAINRLKFQELFTYSLKIIMMKAH 114

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            KKE  GI   +   + +++  ++P++ T +Q   +++IL D  +   M R++QGDVGSG
Sbjct: 115 IKKENSGISFKM-SPLLKELKESLPYTLTNAQSRTLREILLDQKRNIAMNRLVQGDVGSG 173

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KTLVALI+M      G Q V+MAP  ILA QHY   KKY     + +E++TG+  +  ++
Sbjct: 174 KTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLDKFGVDIELLTGSTKEKEKK 233

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           +  E+IA G+  ++IGTHAL QD ++   L LV+ DEQHRFGV+QR +L  K     VL+
Sbjct: 234 RIKEKIASGKEIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLINKNKRADVLV 293

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKK 484
           MTATPIPRTL L    D+DIS I E P GRKPI T+++ +N R+      LK V  +G++
Sbjct: 294 MTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFALKEV-EKGRQ 352

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
            Y + P IEE ++ N  SV + +  L         I I+HG+M+  DK+ ++++FKNG  
Sbjct: 353 FYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMAGKDKDKIINTFKNGEI 412

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE  S CIL+ +   +K
Sbjct: 413 KGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCILIAN---TK 469

Query: 603 NSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           N  T  R+ ++  + DGF IAEEDLK R  GE+ G++Q G   F++A      ++L+ A 
Sbjct: 470 NDITRRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVDDINILKCAN 529

Query: 661 KDAKHILTQ 669
            +AK I+  
Sbjct: 530 HEAKLIVNN 538


>gi|312892401|ref|ZP_07751896.1| ATP-dependent DNA helicase RecG [Mucilaginibacter paludis DSM
           18603]
 gi|311295185|gb|EFQ72359.1| ATP-dependent DNA helicase RecG [Mucilaginibacter paludis DSM
           18603]
          Length = 702

 Score =  357 bits (915), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 246/683 (36%), Positives = 370/683 (54%), Gaps = 33/683 (4%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            P+   +GVG   +  L K +         F DLL + P  +IDR    KI E + + + 
Sbjct: 8   TPIEYLKGVGVARADVLKKELGIFT-----FADLLRHFPYKYIDRTRFYKIREANPD-LP 61

Query: 71  TITGYISQHSSFQLQKRRPYKIL--LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            +   +   S   L ++   +++  + D TG + L +F +  + ++     G+   V GK
Sbjct: 62  HVQIIVRLKSKEILGEKHTKRLIAQVYDDTGTMELAWF-QGIKWIEKSLIVGKAYVVFGK 120

Query: 129 IKKLKNRIIMVHPHYIFHNSQDV----NFPLIEAVYSL----PTGLSVDLFKKIIVEALS 180
                 +  M HP    ++ + +    N  L  A  S     P  L     +K+I   L 
Sbjct: 121 PGLFNGKAQMAHPEIELYSPEAIKKQGNLKLQPAYSSTEKLKPFSLDSKGIQKLIAILLE 180

Query: 181 RLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +    + E I + LLQK       EA+  IH P    D    + A +RL ++EL   Q  
Sbjct: 181 QTAKDIEESIPQHLLQKLRLIGRREAYMNIHFP---ADTSHLNLAVDRLKFEELFFIQFK 237

Query: 240 LL----LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRM 294
           LL    L   +FK  I       G    +  +N +PF  T +Q+  +K+I QD  +  +M
Sbjct: 238 LLKNKLLHTLKFKGNI---FGTVGSYFNEFYKNKLPFDLTNAQKRVLKEIRQDTQRGIQM 294

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVGSGKT+VAL++M  A++ G Q  IMAP  ILA QHY+ I++   +  + V +
Sbjct: 295 NRLLQGDVGSGKTVVALMSMLLAIDNGFQTCIMAPTEILANQHYQSIEQLIDDEFLEVAL 354

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+     R+   +++  G   I+IGTHAL +D +Q+  L  V++DEQHRFGV+QR KL
Sbjct: 355 LTGSTSAKKRKVLHQKLESGDLKILIGTHALIEDKVQFKNLGFVVIDEQHRFGVEQRAKL 414

Query: 415 TQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
            +K    PHVL+MTATPIPRTL +T  GD+D+S I E PAGRKPI+T+ +  +    +  
Sbjct: 415 WRKNIIPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPAGRKPIETLHLYDSHRLRMFG 474

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDK 530
            +K  + +G++ Y + P I+E ++ + +++ +    +   F      I+I+HG+MS  DK
Sbjct: 475 FMKREIDKGRQVYVVYPLIKESEKLDLKNLTDGIEVMAREFPLPQYRISIVHGQMSASDK 534

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           +  M  F  G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S
Sbjct: 535 DFEMQRFIKGETQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQS 594

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            CIL+    LS +   RL  +  T +GF I+E DL+ R  G I G +QSG+    +A   
Sbjct: 595 YCILMSSHKLSHDGKIRLETMVKTNNGFEISEIDLQLRGPGNIEGTQQSGVLDLKLANLA 654

Query: 651 LHDSLLEIARKDAKHILTQDPDL 673
               LL IARK  + I  +DP L
Sbjct: 655 TDQQLLMIARKCVEGIFEKDPQL 677


>gi|257870553|ref|ZP_05650206.1| ATP-dependent DNA helicase RecG [Enterococcus gallinarum EG2]
 gi|257804717|gb|EEV33539.1| ATP-dependent DNA helicase RecG [Enterococcus gallinarum EG2]
          Length = 681

 Score =  357 bits (915), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 222/662 (33%), Positives = 373/662 (56%), Gaps = 27/662 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++   GVG+K +  L+ +            DLL Y+P  + D   R +++EI ++  VT
Sbjct: 10  PITVLSGVGEKRAKDLAAL------GIQTIEDLLRYYPFRYEDIQER-QLNEIQDQEKVT 62

Query: 72  ITGYISQHS---SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I G +   +    F  +K R    ++ D   ++  + F+ +   LK+      +I V GK
Sbjct: 63  IKGIVVSPAVVNRFGYKKSRLQFRMMQDH--DVFNVSFFNQP-YLKDKVVLSEEIAVYGK 119

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
               +  +  +    I  + +  +F P+     S+   + VDL ++      S    + E
Sbjct: 120 WDAKRKSLAGMK---ILGSKKPGDFAPIYHVNKSVRQSVLVDLIRQAFE---SYGDQIEE 173

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +   L +K        A   +H P   KD + +  A+ R+ ++E    Q+ +  ++   
Sbjct: 174 ILPLTLTEKYRLLDRQTAMRAMHFP---KDPQESHQAKRRIIFEEFFLFQMQIQGLKISE 230

Query: 248 KKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           K E  G+ I+ + +  +   + +PF  T +Q+    +I  D+     M R+LQGDVGSGK
Sbjct: 231 KAEKNGLAIDYDVQRLKAFTQTLPFELTAAQKRVTNEICHDLKSPQHMQRLLQGDVGSGK 290

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA IA+ A + AG Q  +M P  ILAQQH E + +     ++   ++TG+     RR 
Sbjct: 291 TVVAAIALYATMTAGFQGALMVPTEILAQQHLESLNQLFDPLEVTTALLTGSTKTKERRV 350

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE++A G+  I++GTHAL Q+ + + +L LVI DEQHRFGV QR  L +K   P VL M
Sbjct: 351 ILEQLAAGEIDIVVGTHALIQEGVNFARLGLVITDEQHRFGVNQRKILREKGYLPDVLFM 410

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL +T+ G++D+S I E PAGR P++T  +   +++ V++  +  L++G + Y
Sbjct: 411 TATPIPRTLAITAYGEMDVSIIDEMPAGRIPVETRWVRPPQLESVLDWARQELAKGHQMY 470

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP IEE +  + ++  E +  L  +F  +  + I+HG+M +I+K+ +M+ FK+   ++
Sbjct: 471 VICPLIEESEMLDVKNATEIYEQLQAYFAPNYQVGILHGKMKNIEKDEIMEEFKDNQLQI 530

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P  ++  
Sbjct: 531 LVSTTVIEVGVNVPNATVMLIIDADRFGLAQLHQLRGRVGRGADASYCILVANPK-NETG 589

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F  A       +LE+A+ +A 
Sbjct: 590 IERMKIMTETTNGFVVSEKDLQLRGPGEVFGNRQSGLPEFAAADLVADAHILEVAQVEAT 649

Query: 665 HI 666
            I
Sbjct: 650 QI 651


>gi|282861348|ref|ZP_06270413.1| ATP-dependent DNA helicase RecG [Streptomyces sp. ACTE]
 gi|282564006|gb|EFB69543.1| ATP-dependent DNA helicase RecG [Streptomyces sp. ACTE]
          Length = 754

 Score =  357 bits (915), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 231/709 (32%), Positives = 368/709 (51%), Gaps = 91/709 (12%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100
           DLL ++P  + +R     ++++  +  VT+   ++     +F   + +  ++ L DG+G 
Sbjct: 34  DLLHHYPRRYEERGRLTALTDLPLDEHVTVVAQVADARVMTFNGGRGKRLEVTLTDGSGR 93

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-------- 152
           + L+FF             GR+    GK+     ++ + HP Y   ++Q  +        
Sbjct: 94  LQLVFFGHGVHKPHKELLPGRRAMFAGKVSVFNRKLQLAHPTYQLLDAQAEDEATEAVDA 153

Query: 153 --------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
                   +P  + + S     +VD       EA+  LP         L + + F  + E
Sbjct: 154 FAGQLLPIYPACKQLDSWRIAKAVDTVLPSAQEAVDPLPA-------SLREGRGFLPLPE 206

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
           A   IH P    D    + ARERL +DE    Q+AL   R++F  +  +P      +   
Sbjct: 207 ALLRIHRPHTKADI---AAARERLRWDEAFVLQVAL--ARRRFA-DTQLPAVARRPVPDG 260

Query: 265 ILRN----IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +L      +PF+ T+ Q+    +I  D++ ++ M R+LQG+VGSGKTLVAL AM   V+A
Sbjct: 261 LLDAFDAVLPFTLTEGQQKVTGEIFGDLATEHPMHRLLQGEVGSGKTLVALRAMLRVVDA 320

Query: 321 GGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVE----------------------- 353
           GGQA ++AP  +LAQQH+    E + +  +N  +  E                       
Sbjct: 321 GGQAAMLAPTEVLAQQHHRSITEMMGELAENWGLWREAPLDEGRRPGDGRALGGSDRGTK 380

Query: 354 --IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
             ++TG+M  A RR+AL  +  G+A I+IGTHAL +D ++++ L LV+VDEQHRFGV+QR
Sbjct: 381 VVLLTGSMGTAARRRALLDLVTGEAGIVIGTHALIEDKVKFHDLGLVVVDEQHRFGVEQR 440

Query: 412 LKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--- 467
             L  K    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI + ++P      
Sbjct: 441 DALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKDKPH 500

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQI------EEKKESNFRS-------------VVERF 507
            +D   ER++  +  G +AY +CP+I       EKK+   +S             V++  
Sbjct: 501 FLDRAWERVREEVEGGHQAYVVCPRIGDDADEAEKKKGRKQSAPADDAEKRPPLAVLDIA 560

Query: 508 NSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             L +   +   I ++HGRM   DK+ VM  F  G   +L+ATTVIEVG++V +A+ ++I
Sbjct: 561 AQLAKGPLAGLRIEVLHGRMPPDDKDDVMRRFAAGEADVLVATTVIEVGVNVPNATAMVI 620

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            +A+ FG++QLHQLRGRVGRG     C+L+     +  +  RLS +  T DGF ++  DL
Sbjct: 621 MDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEAHEASPARARLSAVAATLDGFELSRIDL 680

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673
           +QR+EG++LG  QSG+   L     + D  ++  AR++A  ++  DPDL
Sbjct: 681 EQRREGDVLGQAQSGVRSSLRVLSVIDDEEVIAAAREEAVRVVAADPDL 729


>gi|148544386|ref|YP_001271756.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri DSM 20016]
 gi|148531420|gb|ABQ83419.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri DSM 20016]
          Length = 678

 Score =  356 bits (914), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 229/667 (34%), Positives = 367/667 (55%), Gaps = 22/667 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEI 64
           +  L   ++  +GVG K      ++ +          DLL Y+P+ + D  + P  I   
Sbjct: 1   MRSLTDSVANLKGVGPK------RVADLATLGIDTIEDLLTYYPTRYND--FTPTDIESA 52

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKI 123
            +++ +T+ G +           R  ++      G E+ +  F+ +  + K +    +++
Sbjct: 53  KDKQKITLQGVVVSEPLLVRYGYRRNRLTFRMQVGNEVVIATFFNQPYIKKQIELN-QQV 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           TV GK    + ++       +   + D N     AVY++   +  ++ +  I +A     
Sbjct: 112 TVMGKWDAPRRQV--TGNKLLKEKADDRNE--FGAVYAVNKHIRQNVLQSFIRQAYEEYA 167

Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            ++P ++ + + Q+       +    IH P+          AR   AY+E    Q+ L  
Sbjct: 168 NIIPTYLPETIRQRYRLMDRRQMIREIHFPQTQA---TAKAARRTAAYEEFFLFQLRLQA 224

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  ++E G  I       ++ +  +PF  T +Q+  + +I +DM Q  +M R+LQGDV
Sbjct: 225 IRRAHRQEDGERILYHNDELKEFIGGLPFELTDAQKRVVNEICRDMRQPYQMNRLLQGDV 284

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA IA+ AA+ AG QA +MAP  ILA QH + + K  + T + V ++TG++   
Sbjct: 285 GSGKTIVAAIAIYAAITAGYQAALMAPTEILAGQHAKKLAKIFEGTHVQVALLTGSLTAK 344

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
             R+ L  +  G  ++I+GTHAL QD ++Y  L LVI DEQHRFGV QR +L +K   P 
Sbjct: 345 QHRELLTAMKRGDVNLIVGTHALIQDGVEYANLGLVITDEQHRFGVNQRQQLREKGEHPD 404

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL +T+ G++D+S I + PAGRKPI+T  +  N+    I  L+  L +G
Sbjct: 405 VLAMTATPIPRTLAITNYGEMDVSIIDQLPAGRKPIQTKWLQSNQHAAAIHFLREQLKQG 464

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540
            +AY + P IEE    + ++  + +N L      +  + ++HGRM   +K+  M  FK+G
Sbjct: 465 AQAYVVSPLIEESAALDVQNATDLYNQLSADLEPAYKVGLLHGRMGTEEKDEAMRQFKSG 524

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+D  +A++++I +A+ FGLAQLHQLRGRVGRG   S C+L+  P  
Sbjct: 525 ELQVLVATTVIEVGVDNPNATVMVIYDADRFGLAQLHQLRGRVGRGSRQSYCLLIADPKT 584

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            +    R+  +  T+DGF IAE+DLK R  G++LG KQSGMP+F +  P     +L+IAR
Sbjct: 585 DEGK-ARMKTMVATDDGFKIAEQDLKLRGSGDVLGKKQSGMPEFKVGDPVADLKMLQIAR 643

Query: 661 KDAKHIL 667
            DA ++L
Sbjct: 644 ADAGNLL 650


>gi|288800335|ref|ZP_06405793.1| ATP-dependent DNA helicase RecG [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332548|gb|EFC71028.1| ATP-dependent DNA helicase RecG [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 701

 Score =  356 bits (914), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 234/674 (34%), Positives = 375/674 (55%), Gaps = 32/674 (4%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVTITG 74
            +GVG K    LS  +           DLL Y+P  ++DR     + E++ +   V I G
Sbjct: 12  LQGVGPKRKDILSSELGIKTWG-----DLLEYYPYKYVDRSKIYAVHELTGDMPFVQIKG 66

Query: 75  YISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
            I     F++  RR   +      TG +  L +++  + ++  +    +  V GK     
Sbjct: 67  RILSFEEFEMGARRKRLVAHFRGSTGGVVDLVWFQGAQYIRKTYNLNDEYLVFGKPTFYN 126

Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKI-----IVEALSRLPV---- 184
            R    HP       + V    IE +   P  ++ +  KK       +E ++R+ V    
Sbjct: 127 GRYQFTHPEI-----EKVGEVQIETMRMQPYYITTEKMKKAGLQSRAIEKITRMLVDKIP 181

Query: 185 ---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              LPE +   + ++    S  EAF  IH P    D +    A+ RL ++EL   Q+ +L
Sbjct: 182 QEALPETLPTFITERLHLVSRYEAFRNIHYPTSLTDVQ---NAQLRLKFEELFFVQLNIL 238

Query: 242 LMRKQFKKEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
               + +++  G  +   G         N+PF  T +Q+  +K+I  DM    +M R+LQ
Sbjct: 239 RYSTEHRRKYRGYLLPKVGHFFNTFYTNNLPFPLTNAQKRVMKEIRSDMITGRQMNRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVAL+ M  A++   QA +MAP  ILA+QH+  I  + ++  + VE++TGN+
Sbjct: 299 GDVGSGKTLVALMTMLIAIDNDFQACLMAPTEILAEQHFTTIVSFLKSLDVQVELLTGNV 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-A 418
               R++ L R+  G+  +++GTHA+ +DS+Q+ +L + +VDEQHRFGV QR K+  K A
Sbjct: 359 KGKKRQEILTRLEKGEIQMLVGTHAVIEDSVQFARLGVAVVDEQHRFGVAQRAKMWAKSA 418

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+     +   + + ++  
Sbjct: 419 QPPHVLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIETIHKYDTQTVSLYDGIRKQ 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++G++ Y + P I+E ++++ +S+   F +L E F +  ++ +HG+M   +KE  M+ F
Sbjct: 479 VAQGRQVYIVFPLIKESEKTDLQSLETGFENLKEVFPNFKMSKVHGKMKPKEKEEEMNRF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G  ++L+ATTVIEVG++V +A++++I  A+ FGL+QLHQLRGRVGRG + S CIL+ +
Sbjct: 539 VKGETQILVATTVIEVGVNVPNATVMVILEAQRFGLSQLHQLRGRVGRGGDQSYCILVTN 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLL 656
             LS ++  R+ ++  T DGF IAE DLK R  G++ G +QSGM   L IA       L+
Sbjct: 599 YKLSADTKKRIDIMCATNDGFQIAEADLKLRGPGDLEGTQQSGMAFDLKIANIARDGQLV 658

Query: 657 EIARKDAKHILTQD 670
           ++AR +A  ++  D
Sbjct: 659 QMARTEALRVVDND 672


>gi|227872675|ref|ZP_03991005.1| DNA helicase RecG [Oribacterium sinus F0268]
 gi|227841489|gb|EEJ51789.1| DNA helicase RecG [Oribacterium sinus F0268]
          Length = 679

 Score =  356 bits (914), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 229/683 (33%), Positives = 367/683 (53%), Gaps = 41/683 (6%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           +GVG+K +    K+      N     DLL   P S++     PK+  ISE R        
Sbjct: 10  KGVGEKTAALFHKM------NIYTKEDLLEDFPISYLQY---PKLCPISEARE------- 53

Query: 77  SQHSSFQLQKRRPYKILLN-----------DGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
            +  +F L      ++L N           D +G++ + +F+     L     +GRK+  
Sbjct: 54  KEWMAFSLVLLEDARVLRNTKLSMLQCSAADESGKLLIQYFH--ASYLLKTLKKGRKLVF 111

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            G++K  +  +I+  P        +     +E +YSL  GL   L +K I E     P +
Sbjct: 112 FGQVKSFRGHLILQQPKIFSLEEYEEKRKSLEPIYSLRKGLGNALRRKCIQEIFKEEPKI 171

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E   +D L+K+   +  +A   +H P++    E      +RLA++EL    + L    +
Sbjct: 172 LESFPRDFLEKEGLCNKKQAMEYLHLPKRE---EERQEGLKRLAFEELFYYSLFLEKEER 228

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            F    G    + GK  ++  + +PFS TK+Q  A++++ +  SQ  R+LR +QGDVGSG
Sbjct: 229 DFLSLSGNEEKIPGK-REEFQKGLPFSLTKAQSEALEEMDRVFSQGERLLRFVQGDVGSG 287

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAH 363
           KT++A   +      G Q  IM P  ILAQQH++ ++K  +  Q  I + ++ G+  +  
Sbjct: 288 KTILAFYVLFLMASKGFQTAIMVPTEILAQQHFQKLQKLLEENQWEIPIALLIGSSSKKE 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           + +  + +  G    +IGT AL Q+ + +  L ++++DEQHRFG+Q+R +L +K   PH 
Sbjct: 348 KERIYQGLKEGSILGVIGTQALIQEGLAFSHLKMLVIDEQHRFGIQERNRLEKKGENPHC 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEVIERLKVVLSEG 482
           + ++ATPIPR+LV    G +    ++EKPA R PIK  +  P +R ++    +K  L +G
Sbjct: 408 IYLSATPIPRSLVKLLYGAVPYLLLSEKPANRLPIKNALFSPADR-EKAFSFIKKELDKG 466

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNG 540
           ++AY ICP +EE +  +  SV     +L ++F    S A++HG+M   +KE VM  F +G
Sbjct: 467 RQAYIICPLVEENENLSVESVTAYQKNLKQYFGKDYSFAVLHGKMKAGEKEQVMQDFSSG 526

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L++TTV+EVG+DV +A++++IENAE FGLAQLHQLRGRVGR E  S CI + H   
Sbjct: 527 KTRILLSTTVVEVGVDVANATVMLIENAERFGLAQLHQLRGRVGRSELQSYCIFMDHKE- 585

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI-LGIKQSGMPKFLIAQPELHDSLLEIA 659
            + S  RLS+++++ DGF IA+EDL  R  G++  G +QSG  +F  A P   + L   A
Sbjct: 586 DEKSQKRLSIIRDSNDGFAIAKEDLALRGPGDLFFGERQSGPLQFRFADPLRDEELFFKA 645

Query: 660 RKDAKHILTQDPDLTSVRGQSIR 682
           R+ AK +L +D  L     Q I+
Sbjct: 646 REAAKTLLEEDALLERPEHQGIK 668


>gi|319941449|ref|ZP_08015777.1| ATP-dependent DNA helicase RecG [Sutterella wadsworthensis 3_1_45B]
 gi|319805069|gb|EFW01899.1| ATP-dependent DNA helicase RecG [Sutterella wadsworthensis 3_1_45B]
          Length = 716

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 227/643 (35%), Positives = 348/643 (54%), Gaps = 16/643 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           D + + P  + D      I  +       I G + + S+    +       L D TG +T
Sbjct: 58  DFVLHLPLRYEDETRIDPIGLLRAGETAQIQGEVVRSSTISTARGPQLVAELADQTGRVT 117

Query: 103 LLF--FYRKTEMLKNVFFEGRKITVTGKIK-KLKNRIIMVHPHYIFHNSQDVNFPL-IEA 158
           L F  +Y  T  L  +   G  +   G+ +      + ++HP      + +   P  +  
Sbjct: 118 LRFIHYYPTTRSLLTI---GTTLRAFGEPRPAYSGGLELIHPKLKKPVAGEDALPSSLTP 174

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           VYSL  G+     +K I  AL  L  + + +  ++      P +  +   +H+P      
Sbjct: 175 VYSLGEGIQQTWLRKRINRALLDLMGMDDPLPAEVAAALQLPGLKASLEYLHHPPADAPH 234

Query: 219 E----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSP 273
           E     T P  +RL +DELLA QI L  +R    +E    + +   K+    L  +PF+ 
Sbjct: 235 EPLMNRTDPHWQRLKFDELLAQQITLKQLRAAVGQESAPALTDSAAKLTTAFLNALPFAL 294

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q     ++  D+++   M R++QGDVG GKT++A +A   A+EAG QA +MAP  IL
Sbjct: 295 TRAQTRVWDEVAHDLAEPRPMHRLVQGDVGCGKTVIAAMAALRAIEAGRQAALMAPTEIL 354

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A QH E I ++ +   + +  +TG +  + +  AL   A G+A ++IGTHAL Q+ + + 
Sbjct: 355 ADQHLEKIARWLEPLGVKIVRLTGRLKASEKTAALAAAASGEAQLVIGTHALIQEGVAFK 414

Query: 394 KLILVIVDEQHRFGVQQRLKLTQ---KATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            L L IVDEQHRFGV+QRL LT+       PH+L+++ATPIPRTL ++   DID+S I E
Sbjct: 415 ALGLAIVDEQHRFGVEQRLALTRLMPDGRRPHLLMLSATPIPRTLAMSYFADIDVSVIDE 474

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P GR P+ T ++ ++R D V+  +   +S+G++ YW+CP IEE +  +          L
Sbjct: 475 LPPGRTPVATKLVRLDRRDAVLAVVNDTVSKGRQVYWVCPLIEESEMLDLTPASRCAEEL 534

Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                   + ++HG MS  +KE+VM  F  G  +LL+ATTVIEVG+DV +A+++IIE+AE
Sbjct: 535 AARLPHVRVGLLHGAMSAAEKEAVMSDFAAGRIELLVATTVIEVGVDVPNATLMIIEHAE 594

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            FGLAQLHQLRGRVGRG   ++C+LL+   LS+    RL +++ + DGF IA  DL+ R 
Sbjct: 595 RFGLAQLHQLRGRVGRGGGAAACVLLFDGNLSETGKERLKIIRESNDGFEIARRDLELRG 654

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            GE LG +QSGMP    A  +    L+E A + A  +L Q P+
Sbjct: 655 PGEFLGEQQSGMPMLQFADLDSDAELVETASRTADLMLKQYPE 697


>gi|291522172|emb|CBK80465.1| ATP-dependent DNA helicase RecG [Coprococcus catus GD/7]
          Length = 687

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 239/678 (35%), Positives = 370/678 (54%), Gaps = 35/678 (5%)

Query: 13  LSTFRGVGKKYSLFLSKI--INCGNANETRFIDLLFYHPSSFIDRHYRPKIS-EISEERI 69
           +ST +G+G K    L++I     G        D+  ++P  +    Y   +S E +E   
Sbjct: 7   ISTIKGIGAKTESHLARIGIYTVG--------DMAEHYPREY--HAYDTPVSIENTEYDN 56

Query: 70  VTITGY---ISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
              +GY    S+      + R P   ++L+ G   + +++++  +  ++     G  + +
Sbjct: 57  RRQSGYRVIFSETPKLLKRGRTPIVSVMLHAGNASVQVVWYH--SPYVRQQLKPGCTVIL 114

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            GKI    +R ++ HP     +   +    ++ VY L  GL+ + F K +   L    +L
Sbjct: 115 YGKITSKGSRRMLDHPDIYTEDQYALLQKSLQPVYGLTEGLTQNFFMKTMHSILDSGLLL 174

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           P+ +  D+ ++        A   IH P   ++ E    AR+RL +DE L   +++    K
Sbjct: 175 PDPLPADIRRQYQLSEYNYALRQIHFP---ENEEACRMARKRLVFDEFLVFALSV----K 227

Query: 246 QFKKEIGIPIN----VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           Q KKE     N     E     +++ ++P+  TK+Q     +I +DM     M R++QGD
Sbjct: 228 QLKKENHQIENHYQIQESAAVSQLIASLPYHLTKAQLRVWHEIEEDMKSPVVMNRLVQGD 287

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT++A +AM AA +AG Q+ +MAP  +LA+QHYE ++       I   ++TG+M  
Sbjct: 288 VGSGKTMIAALAMFAAAKAGFQSCMMAPTEVLARQHYENLQALYAPFGIETVLLTGSMTA 347

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
           A +RK   RI + +A +IIGT ALFQ+   Y KL L++ DEQHRFGV+QR +L  K+   
Sbjct: 348 AAKRKTYSRIENHEADVIIGTQALFQEKAVYDKLALIVTDEQHRFGVRQREQLAMKSNGG 407

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PHVL+M+ATPIPRTL +    D+DIS + EKPA R PIK  ++  +        L+  +
Sbjct: 408 EPHVLVMSATPIPRTLAIILYSDLDISVVDEKPANRLPIKNCVVGTSYRPTAYRFLEQQI 467

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSF 537
            +G + Y +CP +EE +     +V E    L +   + I +  +HG+M    K  +M+ F
Sbjct: 468 RQGHQVYVVCPMVEESENIEAENVQEYTEKLKKVLPADIKVEYLHGQMKPEQKNGIMERF 527

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G  ++L++TTVIEVG+DV +A++++IENAE FGLAQLHQLRGRVGRG+  S CI +Y 
Sbjct: 528 SEGEIQVLVSTTVIEVGVDVPNATVMMIENAERFGLAQLHQLRGRVGRGDAQSYCIFIYG 587

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
              +K    RL+++  T DGF IA EDLK R  G++ GI+QSG   F I       + L 
Sbjct: 588 QE-NKKVKDRLNIMLGTNDGFKIASEDLKLRGPGDMFGIRQSGSMIFKIGDVFADSACLV 646

Query: 658 IARKDAKHILTQDPDLTS 675
            A K A HIL++DP+L S
Sbjct: 647 EAGKAADHILSEDPELKS 664


>gi|49483390|ref|YP_040614.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257425280|ref|ZP_05601705.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257427940|ref|ZP_05604338.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257430573|ref|ZP_05606955.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433334|ref|ZP_05609692.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436176|ref|ZP_05612223.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus M876]
 gi|282903780|ref|ZP_06311668.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905544|ref|ZP_06313399.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908520|ref|ZP_06316350.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910799|ref|ZP_06318602.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914002|ref|ZP_06321789.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918924|ref|ZP_06326659.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924047|ref|ZP_06331723.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus C101]
 gi|283957968|ref|ZP_06375419.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293501035|ref|ZP_06666886.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509994|ref|ZP_06668702.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526582|ref|ZP_06671267.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295427712|ref|ZP_06820344.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297591329|ref|ZP_06949967.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus MN8]
 gi|81651274|sp|Q6GHK8|RECG_STAAR RecName: Full=ATP-dependent DNA helicase recG
 gi|49241519|emb|CAG40205.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271737|gb|EEV03875.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257274781|gb|EEV06268.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278701|gb|EEV09320.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281427|gb|EEV11564.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284458|gb|EEV14578.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus M876]
 gi|282314019|gb|EFB44411.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316734|gb|EFB47108.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322070|gb|EFB52394.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325404|gb|EFB55713.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327582|gb|EFB57865.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330836|gb|EFB60350.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595398|gb|EFC00362.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790117|gb|EFC28934.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920654|gb|EFD97717.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096040|gb|EFE26301.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466938|gb|EFF09456.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus M809]
 gi|295128070|gb|EFG57704.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576215|gb|EFH94931.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus MN8]
 gi|312438396|gb|ADQ77467.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus TCH60]
 gi|315194113|gb|EFU24506.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 686

 Score =  356 bits (913), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 215/636 (33%), Positives = 358/636 (56%), Gaps = 24/636 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ Y P+ + D      +++  ++  VTI G +          R   K+ ++     I 
Sbjct: 37  DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ--------DVNFP 154
           +   +     LK      + ITV GK  ++K  I     + +F NSQ        DV   
Sbjct: 96  VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEIT---GNRVFLNSQGTQTQENADVQ-- 150

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            +E VY +  G+     +  I +AL+ + +  EW+  +L +K    ++    N +H+P+ 
Sbjct: 151 -LEPVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDELREKYKLETLDFTLNTLHHPKS 208

Query: 215 AKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            +D      AR   A+ EL   ++ +  L R +   +  I I+ +    +  +  +PF  
Sbjct: 209 KEDL---LRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFEL 265

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I M A   AG Q+ +M P  IL
Sbjct: 266 TEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEIL 325

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH E +     ++ + V ++TG++    R+  LE++ +     +IGTHAL QD + ++
Sbjct: 326 AEQHAESLIALFGDS-MNVALLTGSVKGKKRKILLEQLENRTIDCLIGTHALIQDDVIFH 384

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            + LVI DEQHRFGV QR  L +K    +VL MTATPIPRTL ++  G++D+S I + P 
Sbjct: 385 NVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPK 444

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHE 512
           GRKPI T      + D+V+ ++   L +G++AY ICP IE  +   + ++VV  + SL +
Sbjct: 445 GRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQ 504

Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           ++  S + ++HG++S  +K+ VM  F N    +L++TTV+EVG++V +A+ ++I +A+ F
Sbjct: 505 YYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRF 564

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+ LHQLRGRVGR ++ S C+L+  P  ++    R++++  T DGF ++E DL+ R  G
Sbjct: 565 GLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPG 623

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 624 DFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659


>gi|317131206|ref|YP_004090520.1| ATP-dependent DNA helicase RecG [Ethanoligenens harbinense YUAN-3]
 gi|315469185|gb|ADU25789.1| ATP-dependent DNA helicase RecG [Ethanoligenens harbinense YUAN-3]
          Length = 687

 Score =  356 bits (913), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 243/683 (35%), Positives = 365/683 (53%), Gaps = 51/683 (7%)

Query: 15  TFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74
           T RGVG K +   +K+      +  R  DLL+  P S+ D      IS+ +   +  I  
Sbjct: 10  TLRGVGPKRAALFAKL----GVHTVR--DLLYTFPRSYEDFTRPVSISQAAPGEVCCIRA 63

Query: 75  YISQ-------HSSFQLQKRRPYKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITV 125
            +S             L K R     + D +G + ++FF  K   E+LK    EG    +
Sbjct: 64  VVSAPIRVTRASGGMLLCKTR-----VADDSGILEVVFFNNKYAAELLK----EGAAYFL 114

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV- 184
            G++     R  M  P  +         P +  VY+   GLS       +  ALS     
Sbjct: 115 YGRVSGTLFRKTMTAPECLPAGCN----PGLRPVYATTAGLSSRAVGAAVQAALSLFATR 170

Query: 185 -LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            +PE +   L  +     +  A   IH PR   D +  + AR RL +DELLA  + + L+
Sbjct: 171 TIPELLPDTLRAEYQLCRVGCALQNIHFPR---DGQALAAARRRLVFDELLALLLGMGLL 227

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + + +   P  +          ++P++PT +Q  A+ +   DM++   M R+++GDVG
Sbjct: 228 RHR-QADGHAPRCLPDFDFAPFFASLPYTPTGAQLRAVAEAAADMARAVPMNRLIEGDVG 286

Query: 304 SGKTLVALIAMAAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           SGKT VA  A+     AGG Q+ +MAP  ILA QH   +++    + + V ++TG +P A
Sbjct: 287 SGKTTVA-AALCVLAHAGGLQSALMAPTEILAAQHARNLERLLAPSGLRVGLLTGGLPAA 345

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----- 417
            +R+    IA G   +++GTHAL Q+ + +++L LVI DEQHRFGV QR  L  K     
Sbjct: 346 KKREVKAAIADGSVGLVVGTHALLQEDVAFHRLGLVITDEQHRFGVAQRAALAAKGSTDA 405

Query: 418 --ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
             +++PH+L+M+ATPIPRTL L   GD+D+S + E PAGR+P++T ++       V   L
Sbjct: 406 VDSSSPHMLIMSATPIPRTLSLMIYGDLDVSVLNELPAGRRPVRTYLVGSGLRARVHRFL 465

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESV 533
           +  + +G++AY +CP + E  ES   + V+  + L E   + I   ++HGRM   +KE V
Sbjct: 466 RTQVEQGQQAYIVCPLV-EADESELAAAVQLRDGLAETSLAGIPVGLLHGRMPAREKEKV 524

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +F  G  KLL++TTVIEVG+DV  A+++++ENAE FGL+QLHQLRGRVGRG   S CI
Sbjct: 525 MQAFAAGDLKLLVSTTVIEVGVDVPAATVMVVENAERFGLSQLHQLRGRVGRGAAQSHCI 584

Query: 594 LLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           L+     ++++ T  RL  L  T DGF IAE+DLK R  G+  G +Q G+P   IA    
Sbjct: 585 LISD---AEDAATRERLQTLCKTADGFAIAEQDLKLRGPGDFFGKRQHGLPALAIADLMG 641

Query: 652 HDSLLEIARKDAKHILTQDPDLT 674
              +L+ AR+ A  +L QDP L+
Sbjct: 642 DMDILQEARRAADTLLRQDPALS 664


>gi|291542986|emb|CBL16096.1| ATP-dependent DNA helicase RecG [Ruminococcus bromii L2-63]
          Length = 681

 Score =  356 bits (913), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 238/686 (34%), Positives = 369/686 (53%), Gaps = 42/686 (6%)

Query: 12  PLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
           P++   G+G+K +   ++  I + G        DL+ ++P ++ D      I E+     
Sbjct: 8   PVTNLNGIGEKRAALFARLGIKSVG--------DLINFYPRTYEDWSNIKHIDELEYGET 59

Query: 70  VTITGYI--SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           V I   +  S + +     R   K  + D TG I L+FF  K   + ++  +G +    G
Sbjct: 60  VCIKAVVATSVNDTRISGGRIISKTAVYDETGSIQLVFFNNK--YISSMLRQGGEYFFYG 117

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--- 184
           KI      + +V P +    +  V    I  +Y    GL     +  + +ALS LP    
Sbjct: 118 KISSDSYGMQIVSPTF----APAVKGTQIRPIYRQTAGLPSKSVESAVRQALSMLPSKIK 173

Query: 185 --LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             LP+ I     ++    S+ +A   IH P+  +  E    AR+RL  +EL+   + +  
Sbjct: 174 DPLPDAIR----ERFDLCSLRQALFDIHFPKNRQQLE---AARKRLVTEELVVLNLGMRN 226

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML-RILQGD 301
           +R   +    + I  +   +++    +PF+ T +Q+ A+ D + D+  K+  L R++QGD
Sbjct: 227 LRDHSRGVTSLEITKD--YSKEFESLLPFTMTNAQKRAVSDCINDIINKSSPLNRLVQGD 284

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT VA        + G Q   MAP  ILA+QHY+  +K  +NT I V ++TG + +
Sbjct: 285 VGSGKTAVAASVCYTVAKNGFQTAFMAPTEILARQHYKTFQKLFENTDIKVGLLTGTLRE 344

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           + +++  + +A G   ++IGTHAL  D  ++  L L + DEQHRFGV QR KL  K   P
Sbjct: 345 SEKKQIRKSLADGSIDMVIGTHALITDKTEFKNLALAVTDEQHRFGVAQRAKLLGKGNNP 404

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H+L+M+ATPIPRTL L   GD+DIS I E P  RKP+KTV+        V + ++  +  
Sbjct: 405 HLLVMSATPIPRTLGLIIFGDLDISIIDELPPSRKPVKTVLRTSAMRGGVYDFIRSEVKH 464

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNS--LHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           G++AY +CP +EE +  +  S  E      L E    ++ I+HG+M   +K+ VM  F  
Sbjct: 465 GRQAYIVCPLVEEGELDDVASAEEYAADLMLREFPDIAVGIVHGQMKSDEKDEVMRKFVE 524

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+ATTVIEVG+DV +A++I+IENAE FGL+QLHQLRGRVGRG   S CIL+    
Sbjct: 525 NEYSVLVATTVIEVGVDVPNATVIVIENAERFGLSQLHQLRGRVGRGSSQSYCILISDKG 584

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEI 658
            SK +  RL V+ +T +GF+IA+EDLK R  G+  G +Q G+P+  IA  +  D+  LE+
Sbjct: 585 -SKTTRERLEVMCSTNNGFVIADEDLKMRGPGDFFGHRQHGLPQMSIA--DFADTKSLEL 641

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRIL 684
           ++K A  I+ +  D   +R   IR+L
Sbjct: 642 SQKIADCIMDRYGD---IRNDEIRLL 664


>gi|295425211|ref|ZP_06817914.1| DNA helicase RecG [Lactobacillus amylolyticus DSM 11664]
 gi|295064987|gb|EFG55892.1| DNA helicase RecG [Lactobacillus amylolyticus DSM 11664]
          Length = 679

 Score =  356 bits (913), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 223/687 (32%), Positives = 372/687 (54%), Gaps = 27/687 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +       N G+       DLLFY P  + +    P + +I +
Sbjct: 4   NALFAPVTDIKGVGTKTA------ANLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56

Query: 67  ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + V + G ++     + F  +K R  +K+ ++    +I ++ F+ +   LKN    G++
Sbjct: 57  GQKVLLKGIVATEPFLTRFGYKKSRLSFKLRIDH---DIVMVNFFNQP-WLKNKVEIGKE 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR- 181
           + V GK    +  +      ++     D     +  +Y +   +       +I  A+   
Sbjct: 113 VAVYGKYNVARQSLSAFK--FVAEKENDSG---MAPIYPVNKHVKQKKLVGLINFAIDNY 167

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           L  + + I   + +K    +  E  + +H+P+   + +    A+    + E    Q+ L 
Sbjct: 168 LDQVKDIIPAKVREKYRLLTDQEIISKMHHPKNGNEAQL---AKRSAIFREFFIFQMQLA 224

Query: 242 LMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L+  Q  +   G     + K   K+  ++PF  +  Q+ A+ +I  D+ QK +M R+LQG
Sbjct: 225 LLTSQSNEHNTGEAKKYDLKAIAKLTASLPFELSADQKQAVNEIYADLFQKRQMRRLLQG 284

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA+ A+ AA+ AG QA +M P  ILA QH+  I +  +   + V ++TGN  
Sbjct: 285 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFNKIDQLLRPLGVRVALLTGNTK 344

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+    +  G  +++IGTHAL Q ++ +  L LVI+DEQHRFGV QR  L  K   
Sbjct: 345 TLERREIYRELTDGTINVVIGTHALIQKNVIFKNLGLVIIDEQHRFGVGQRQALINKGEC 404

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P +L MTATPIPRTL LT  G++ +S+I   PAGRKPI +     +++D V   ++  L+
Sbjct: 405 PDILAMTATPIPRTLALTVYGEMSVSEIRHLPAGRKPIISSWQTSSQMDSVYRLMREQLA 464

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKN 539
            G + Y + P I E +  + ++  E    L   F   ++ ++HG+M    K+ +M  F  
Sbjct: 465 AGFQIYAVTPLISESETLDLKNAEELHQKLSHDFPDQNVVLLHGQMPGPKKDEIMADFAA 524

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ +  P 
Sbjct: 525 GEIDILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCVFVADPK 584

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            + +   R+ ++ +T DGF +AEEDLK R EG++ G  QSG+P+F +     +   L +A
Sbjct: 585 -TDSGKARMKIIASTNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGNVVNNYQTLVVA 643

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLY 686
           +K+AK ++  DP LT+   Q+++ +L+
Sbjct: 644 QKEAKALVQADPKLTAADHQTLKEILH 670


>gi|297565888|ref|YP_003684860.1| ATP-dependent DNA helicase RecG [Meiothermus silvanus DSM 9946]
 gi|296850337|gb|ADH63352.1| ATP-dependent DNA helicase RecG [Meiothermus silvanus DSM 9946]
          Length = 903

 Score =  356 bits (913), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 215/641 (33%), Positives = 358/641 (55%), Gaps = 18/641 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGE 100
           DLL  +P  + DR     I E+ E    T+ G +      +  ++     ++ L D  G 
Sbjct: 246 DLLHNYPRRYEDRRALVSIREVHEGEKATVVGKVLTKEMVKTPRKGITLVQVRLMDAWGW 305

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
                ++ +  +LK++  EG  + ++GK++K  ++I ++  ++     + ++   I  VY
Sbjct: 306 KFTAVWFNQPWVLKSIQ-EGSSVIISGKVQKRGSQISLLVEYFENEEGESLSTGRIVPVY 364

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPE----WIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
               G+S    ++     L   P+LP+    +++ D       P +  +    H P   +
Sbjct: 365 PAKEGISQAFLRRSAWRGLEAFPLLPDPLEPYLQADGAPSLDLPPLRWSLQQAHFPDSEE 424

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
           +    + A ERL +DE +  ++ +++ +      +G    VE ++ QK   ++PF  T++
Sbjct: 425 NL---ARALERLKFDEYVLLELKVMI-QSGGSGLLGRMFRVEPEMIQKFRSSLPFQLTQA 480

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           QE  + +IL DM  + +M R++QGDVGSGKT VA  A+  A + G Q  +MAP  ILA+Q
Sbjct: 481 QERVLGEILADMQSERQMARLVQGDVGSGKTAVAAAALYVAAQNGAQGALMAPTEILAKQ 540

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY  ++KY     + V+++ G+M    +R+ALER+      +++GTHAL Q+ +++  L 
Sbjct: 541 HYANLQKYLFPLGVTVDLLVGSMSAGEKREALERLQSAHTDVVVGTHALIQEGVEFKDLG 600

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L ++DE+HRFGV QR +L +  + P VL+M+ATPIPR+L LT  GD+++S+I E P GR 
Sbjct: 601 LAVIDEEHRFGVMQRRRLLK--SRPDVLVMSATPIPRSLALTLYGDLEVSQIDELPPGRT 658

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEH 513
           P+KT ++      +     +  +++G + + + P IEE      +  ++       L E 
Sbjct: 659 PVKTKVLTHKLRHQAYAFARQEIAKGNQVFVVTPMIEEGDSEVTAELQAATRLAQELQEL 718

Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                I ++HG+M   +K++VM+ F+     LL++TTVIEVG+D+  A++++IENAE FG
Sbjct: 719 LPDVRIDLLHGKMRAEEKDAVMERFRYRHFDLLVSTTVIEVGVDIPQATVMVIENAERFG 778

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LAQLHQLRGRVGRG   + CIL+     SK + +RL V++ + DGF IAE+DL+ R  GE
Sbjct: 779 LAQLHQLRGRVGRGGLEAYCILIAG-ETSKKTMSRLRVIEESTDGFYIAEKDLELRGPGE 837

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           + G++QSGMP   +        ++E AR  AK IL  DP L
Sbjct: 838 LRGVRQSGMPDLKLGDLVSDGEIIERARALAKRILESDPYL 878


>gi|238854784|ref|ZP_04645114.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 269-3]
 gi|260664015|ref|ZP_05864868.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii SJ-7A-US]
 gi|282933862|ref|ZP_06339210.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 208-1]
 gi|313472296|ref|ZP_07812788.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 1153]
 gi|238832574|gb|EEQ24881.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 269-3]
 gi|239529856|gb|EEQ68857.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 1153]
 gi|260561901|gb|EEX27870.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii SJ-7A-US]
 gi|281301951|gb|EFA94205.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 208-1]
          Length = 674

 Score =  356 bits (913), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 223/679 (32%), Positives = 375/679 (55%), Gaps = 35/679 (5%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            LN LF P++  +GVG K +  L  +      +     DLLFY P  + D    P + ++
Sbjct: 1   MLNNLFEPVTKLKGVGPKTAAALESL------SIYSVYDLLFYFPYRYDDLEMIP-LDQL 53

Query: 65  SEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           ++ + V + G ++     S F  +K R  +K+ ++    +I ++ F+ +   LKN    G
Sbjct: 54  NDGQKVLLKGIVATEPFVSRFGYKKSRLSFKLRIDH---DIIMVNFFNQP-WLKNQLEVG 109

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           +++ V GK    K  +      + F  +++    L   VY +   +      ++I  AL+
Sbjct: 110 KEVAVYGKYNLAKQSL----SGFKFVAAKNEESSL-SPVYPVNRHIKQKKLVELIKLALA 164

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA-----YDELLA 235
           +   L + + +++ QK    +  E    +H P+        SP   +LA     + E   
Sbjct: 165 QKNELMDIVPENIRQKYRLMNDQELVEKMHEPK--------SPNEAKLAKRSAIFREFFI 216

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            QI L L+  + +  +G     +    +K+   +PF  +  Q+  + +I  D+ ++ +M 
Sbjct: 217 FQIQLALLTMRPQGRLGTAKKYDLNEIKKLTATLPFELSDDQKKVVNEIFADLHREKQMR 276

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT+VA+ A+ AA+ AG QA +M P  ILA QH+  I +  +   + + ++
Sbjct: 277 RLLQGDVGSGKTVVAVFAIYAAITAGYQAALMVPTEILANQHFGKIAELLRPFGVRIALL 336

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           T +     +R+    +A G  +++IGTHAL Q S+++  L LVI+DEQHRFGV QR KL 
Sbjct: 337 TSSTKAMEKREIYRELADGTLNVVIGTHALIQPSLKFKNLGLVIIDEQHRFGVNQRQKLM 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K   P +L MTATPIPRTL LT+ G++D+S+I   PAGRKPI +  +    +D+V+ ++
Sbjct: 397 IKGENPDLLAMTATPIPRTLALTAYGEMDVSEIRHLPAGRKPIVSEWVTSTHLDQVLAKI 456

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVM 534
           K  LS+G + Y + P IEE +  + ++  E    L  +F    + ++HG+MS  DK+ +M
Sbjct: 457 KEQLSQGFQIYVVTPLIEESENIDLKNAKELCLKLQSYFNHEKVVLLHGQMSGEDKDQIM 516

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G   +L+AT+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG   S C  
Sbjct: 517 TDFSEGNIDILVATSVIEVGVDVPNANMMVIFDADRFGLSQLHQLRGRIGRGRTESFCYF 576

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +  P  +     R+ ++ +T +GF ++EEDLK R +G++ G  QSG+P+F +       +
Sbjct: 577 VADPK-TDIGKKRMEIISSTSNGFKLSEEDLKLRGQGDLFGKAQSGIPEFRLGDLVNDYN 635

Query: 655 LLEIARKDAKHILTQDPDL 673
            + +A+  A+ ++  DPDL
Sbjct: 636 TMVVAQNVARQLVKADPDL 654


>gi|116629428|ref|YP_814600.1| RecG-like helicase [Lactobacillus gasseri ATCC 33323]
 gi|116095010|gb|ABJ60162.1| ATP-dependent DNA helicase RecG [Lactobacillus gasseri ATCC 33323]
          Length = 679

 Score =  356 bits (913), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 222/673 (32%), Positives = 375/673 (55%), Gaps = 30/673 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           LF P++  +GVG K +  L+ + IN          DLLFY P  + D    P + +I + 
Sbjct: 8   LFEPVTELKGVGAKTATALAGLGINT-------IYDLLFYFPFRYDDLETIP-LDQIEDG 59

Query: 68  RIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           + V + G +      S F  +K R  +K+ ++    +I ++ F+ +   LK+    G+++
Sbjct: 60  QKVLLKGIVVTDPFVSRFGYRKTRLSFKMKIDH---DIIMVNFFNQP-WLKDKVESGKEV 115

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182
            V GK +  +  +       +    ++  F     +YS+   L  +  +K+I  AL   L
Sbjct: 116 AVYGKYQVARQSL---SGFKLVAEKKESGFA---PIYSVNRHLKQNKLQKLIDLALEEVL 169

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
           P + E I   L +K    S       +H+P+   + +    AR    + E    Q+ L  
Sbjct: 170 PEVGETIPAALREKYRLLSDQILVEKMHHPKNGNEAKL---ARRSAIFREFFLFQVQLAQ 226

Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +  Q  +++ G+    +    +++++ IPF  +  Q+  + +I  D+    +M R+LQGD
Sbjct: 227 LLSQRDEDVPGVEKRYDLAAVKELIQAIPFELSDDQKKVVNEIFADLHSPRQMKRLLQGD 286

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA+ A+ A + AG QA +M P  ILAQQH+  + +  +   + V ++TG+  +
Sbjct: 287 VGSGKTVVAVFAIYATITAGFQAALMVPTEILAQQHFAKVDELLRPLGVRVALLTGDTKE 346

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +++    +A G  +++IGTHAL Q  + +  L LVI+DEQHRFGV QR  L +K  AP
Sbjct: 347 LEKKEIYRELADGTINVVIGTHALIQKDVHFKNLGLVIIDEQHRFGVNQRNTLIKKGVAP 406

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL LT  GD+ +S+I   P GRKP+ +     +++ EV+E ++  L +
Sbjct: 407 DVLAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLKEVLELMRSQLEK 466

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G + Y + P I E ++S+ ++  +    L  +F   ++ ++HG+M    K  +MDSF  G
Sbjct: 467 GFQIYVVTPLISESEKSDLKNAEDLQARLAHYFKDENVVLLHGQMKGDQKNEIMDSFAAG 526

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ +  P  
Sbjct: 527 KIDILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK- 585

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    R++++ +T +GF +AEEDLK R EG++ G  QSG+P+F +       + L  A+
Sbjct: 586 TEIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNTLVTAQ 645

Query: 661 KDAKHILTQDPDL 673
           K+A+ ++  DP+L
Sbjct: 646 KEARALVKADPNL 658


>gi|119961125|ref|YP_948203.1| ATP-dependent DNA helicase RecG [Arthrobacter aurescens TC1]
 gi|119947984|gb|ABM06895.1| putative ATP-dependent DNA helicase RecG [Arthrobacter aurescens
           TC1]
          Length = 751

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 242/750 (32%), Positives = 388/750 (51%), Gaps = 85/750 (11%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           R +GK+ +  + K +    A       LL Y P  ++ R     I+++  +  VT+   +
Sbjct: 11  RRIGKRSAAVIDKHLGLKTAGA-----LLNYFPRRYLSRGELTPINKLPLDEEVTLIARV 65

Query: 77  SQHSSFQLQKRRP--YKILLND--------GTGEITLLFFYR-KTEMLKNVFFEGRKITV 125
             +S+ Q++ RR     +++ D        GT +++    +R K E+L      GR+   
Sbjct: 66  LSNSTRQMRARRGSITDVVVTDEAGGGGVPGTLKVSFFNGFRAKAELLP-----GRRAMF 120

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQ-----DVNFPLIEA----VYSLPTGLSVDLFKKIIV 176
           +GK+ +    + + +P ++  +        V+   + A    VY     L+     K+I 
Sbjct: 121 SGKVTRYGGALGLTNPDFLLLDEDPEAEGSVDPEKLAAMPIPVYPATAKLTSWSIHKVIT 180

Query: 177 EALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
             L  + +  L + + + ++++ +  S+AEA+ +IH+P  AKD++    A+ER  Y E L
Sbjct: 181 ALLQTMDLDSLEDPLPESIVRRDALLSVAEAYRLIHSPDIAKDWQR---AQERFRYQEAL 237

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q AL   R Q   E           +  K  +N+PF+ T  Q +  K + +++ +   
Sbjct: 238 VLQTALARRRAQLAAEEATARRPRADGLLSKFDQNLPFTLTAGQSAVGKTLAEELGRDTP 297

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY--------- 344
           M R+LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LA QH+  I+K          
Sbjct: 298 MNRLLQGEVGSGKTIVALRAMLQVVDAGGQAALLAPTEVLAAQHFHSIRKTLGPLARDHI 357

Query: 345 --------TQNTQ--IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
                     +TQ  + V ++TG+MP A R++A+   A G A I+IGTHAL  D   +  
Sbjct: 358 FGGAGMLGGDSTQEAVQVTLLTGSMPTAARKQAMLDAASGNAGIVIGTHALLSDKTSFQD 417

Query: 395 LILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           L L++VDEQHRFGV+QR  L  KA   PH+L+MTATPIPRT+ +T  GD++ S + E PA
Sbjct: 418 LGLIVVDEQHRFGVEQRDALRAKAQRPPHLLVMTATPIPRTVAMTVFGDLETSILDELPA 477

Query: 454 GRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR-------- 501
           GR PI T ++ +      +D + +R +  +  G + Y +CP+I    + +F         
Sbjct: 478 GRAPISTHVVGLAENPGWVDRIWKRSREEVDSGHQVYVVCPKIGSDDDGDFSPGEAEPSD 537

Query: 502 ----------------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
                           +VVE            +A +HGR     K   M SF +   K+L
Sbjct: 538 AELADEGPARELASVTAVVESLLQEPALAGVPVAPLHGRQDPQVKSETMASFASNNTKVL 597

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVG+DV +A++++I +A+ FG++QLHQLRGRVGRG    +C+L+        S 
Sbjct: 598 VSTTVIEVGVDVHNATLMVILDADRFGISQLHQLRGRVGRGGLPGTCLLVTTLEPGHPSR 657

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAK 664
            RL  + +T DGF +++EDLK R+EG+ILG  QSG    L + +   H+ ++  AR DA+
Sbjct: 658 RRLDAVASTTDGFELSQEDLKLRREGDILGASQSGGRSTLKLLRVLEHEEIIARARTDAQ 717

Query: 665 HILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
            ++++DP L      +  I  YL    EAF
Sbjct: 718 GLVSEDPALDHQPVLAAAIDEYLNPEKEAF 747


>gi|329729981|gb|EGG66372.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis VCU144]
          Length = 593

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 203/552 (36%), Positives = 324/552 (58%), Gaps = 19/552 (3%)

Query: 123 ITVTGKIKKLKNRIIMVHPHYIF----HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +T+ GK  + K  I   + + IF     N +D +   +E +Y +  G+     +  I +A
Sbjct: 27  VTIKGKWNRNKQEI---NGNRIFFKDQKNQEDTH---LEPIYRIKEGIKQKQLRDNIRQA 80

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           LS + +  EW+  DL +K    ++A     +H+P   ++      AR   A+ EL   ++
Sbjct: 81  LSDVTI-HEWLTDDLREKYKLETLAYTIQTLHHPINKQNL---LRARRTYAFTELFMFEL 136

Query: 239 AL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            +  L R +   +  I IN +    ++ + ++PF  T +Q+ ++ +I +D+    RM R+
Sbjct: 137 RMQWLNRLEKTSDEAIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRL 196

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VA I M A   AG Q+ +M P  ILA+QH E + +   NT + V ++TG
Sbjct: 197 LQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQHAESLIQLFGNT-MNVALLTG 255

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++    RR  LE++ +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K
Sbjct: 256 SVKGKKRRLLLEQLENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREK 315

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
               +VL MTATPIPRTL ++  G++D+S I + P GRKPIKT      + D+V+ ++  
Sbjct: 316 GAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSN 375

Query: 478 VLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMD 535
            L +G++AY ICP IE  +   + ++VV  + SL   +    + ++HG+MS  DK+ VM 
Sbjct: 376 ELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQSDYGNEKVGLLHGKMSAEDKDQVMQ 435

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F      +L++TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+
Sbjct: 436 KFSKHEIDILVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLI 495

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             P  ++    R++++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +
Sbjct: 496 ASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRM 554

Query: 656 LEIARKDAKHIL 667
           LE+AR +A  ++
Sbjct: 555 LEVARDEAAELI 566


>gi|331701488|ref|YP_004398447.1| ATP-dependent DNA helicase RecG [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128831|gb|AEB73384.1| ATP-dependent DNA helicase RecG [Lactobacillus buchneri NRRL
           B-30929]
          Length = 676

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 236/674 (35%), Positives = 368/674 (54%), Gaps = 53/674 (7%)

Query: 13  LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           +   +GVG+K     +K+ IN  N       DLL Y+P  + D   +   + +  ++ VT
Sbjct: 8   VGVLKGVGEKRLTAFNKLGINTIN-------DLLTYYPRRYDDLSLKDLRTAVDGQK-VT 59

Query: 72  ITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           + G +    + +   RR     + + +ND   EI  + F+ +  + K +  E  ++ + G
Sbjct: 60  VKGIVISEPTVRFFGRRKSRLGFHLKIND---EIYNVTFFNQPWLKKQLELEA-QVIIFG 115

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-----L 182
              + +N+I       I +  +   +   +++Y     +  +  K++I           +
Sbjct: 116 TFDRNRNQI---QGMKILNGEKSDTY---DSIYPSNKEVKQNTIKQLIKLGFDEYQDQLV 169

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE-------LLA 235
            V+PE I      K    S  +    IH P        TSP   + A+         L A
Sbjct: 170 DVIPESIRT----KYRLESFHDTIQNIHFP--------TSPVAAQKAFRTAKFMEFFLFA 217

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            +I +L  R + K +    +  +  +  +    + F  T SQ   + +IL D+ +   M 
Sbjct: 218 MKIQILKQRHR-KPDPAAKVTYDPDLVGQFTSQLKFKLTDSQNKVVNEILTDLGKPLEMN 276

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT+VA IA+ AA+ AG QA IMAP  ILA+QH     K  +   I + ++
Sbjct: 277 RLLQGDVGSGKTVVAAIAILAAISAGKQAAIMAPTEILAEQHANTFAKLFEKFDINIALL 336

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG      R+  L RIA G+ ++I+GTHALFQD + Y+ L L ++DEQHRFGV QR  L 
Sbjct: 337 TGATTGLARKAMLPRIADGEVNLIVGTHALFQDQVDYHDLGLAVIDEQHRFGVNQRQALR 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K  + ++L MTATPIPRTL +T  GD+D+S I E P GRKPIKT  I   + D  I  +
Sbjct: 397 LKGNSTNMLAMTATPIPRTLAITMYGDMDVSVIDELPKGRKPIKTTWITSAKTDSAIRFV 456

Query: 476 KVVLSEGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           K  L  G + Y + P IEE +     N  ++ +RF ++ E    S+ ++HGRMSD +K++
Sbjct: 457 KKQLDAGNQVYVVTPLIEESEAVDMKNAMAIFDRFKAIFEP-QYSVGLLHGRMSDEEKDT 515

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M  FKN   ++L+ATTVIEVG+DV +A+ ++I +A+HFGLAQLHQLRGRVGRG+  S C
Sbjct: 516 AMADFKNNQFQVLVATTVIEVGVDVTNANTMLIFDADHFGLAQLHQLRGRVGRGDTQSYC 575

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           IL+  P  ++    R++ + ++ DGF ++++DL+ R +G+I G KQSGMP F +A P   
Sbjct: 576 ILIADPK-NELGKKRMTAVASSTDGFFLSQKDLELRGQGDITGSKQSGMPDFKVADPVGD 634

Query: 653 DSLLEIARKDAKHI 666
            ++L++A ++A+ I
Sbjct: 635 LNILQVANQEAQSI 648


>gi|238852577|ref|ZP_04642987.1| ATP-dependent DNA helicase RecG [Lactobacillus gasseri 202-4]
 gi|238834723|gb|EEQ26950.1| ATP-dependent DNA helicase RecG [Lactobacillus gasseri 202-4]
          Length = 679

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 222/673 (32%), Positives = 375/673 (55%), Gaps = 30/673 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           LF P++  +GVG K +  L+ + IN          DLLFY P  + D    P + +I + 
Sbjct: 8   LFEPVTELKGVGAKTATALAGLGINT-------IYDLLFYFPFRYDDLETIP-LDQIEDG 59

Query: 68  RIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           + V + G +      S F  +K R  +K+ ++    +I ++ F+ +   LK+    G+++
Sbjct: 60  QKVLLKGIVVTDPFVSRFGYRKTRLSFKMKIDH---DIIMVNFFNQP-WLKDKVESGKEV 115

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182
            V GK +  +  +       +    ++  F     +YS+   L  +  +K+I  AL   L
Sbjct: 116 AVYGKYQVARQSL---SGFKLVAEKKESGFA---PIYSVNRHLKQNKLQKLIDLALEEVL 169

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
           P + E I   L +K    S       +H+P+   + +    AR    + E    Q+ L  
Sbjct: 170 PEVGETIPAALREKYRLLSDQILVEKMHHPKNGNEAKL---ARRSAIFREFFLFQVQLAQ 226

Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +  Q  +++ G+    +    +++++ IPF  +  Q+  + +I  D+    +M R+LQGD
Sbjct: 227 LLSQRDEDVPGMEKRYDLAAVKELIQAIPFELSDDQKKVVNEIFADLHSPRQMKRLLQGD 286

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA+ A+ A + AG QA +M P  ILAQQH+  + +  +   + V ++TG+  +
Sbjct: 287 VGSGKTVVAVFAIYATITAGFQAALMVPTEILAQQHFAKVDELLRPLGVRVALLTGDTKE 346

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +++    +A G  +++IGTHAL Q  + +  L LVI+DEQHRFGV QR  L +K  AP
Sbjct: 347 LEKKEIYRELADGTINVVIGTHALIQKDVHFKNLGLVIIDEQHRFGVNQRNTLIKKGVAP 406

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL LT  GD+ +S+I   P GRKP+ +     +++ EV+E ++  L +
Sbjct: 407 DVLAMTATPIPRTLALTVYGDMAVSEIHHLPKGRKPVVSSWATSSKLKEVLELMRSQLEK 466

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G + Y + P I E ++S+ ++  +    L  +F   ++ ++HG+M    K  +MDSF  G
Sbjct: 467 GFQIYVVTPLISESEKSDLKNAEDLQARLAHYFKDENVVLLHGQMKGDQKNEIMDSFAAG 526

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ +  P  
Sbjct: 527 KIDILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK- 585

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    R++++ +T +GF +AEEDLK R EG++ G  QSG+P+F +       + L  A+
Sbjct: 586 TEIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNTLVTAQ 645

Query: 661 KDAKHILTQDPDL 673
           K+A+ ++  DP+L
Sbjct: 646 KEARALIKADPNL 658


>gi|325290432|ref|YP_004266613.1| ATP-dependent DNA helicase RecG [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965833|gb|ADY56612.1| ATP-dependent DNA helicase RecG [Syntrophobotulus glycolicus DSM
           8271]
          Length = 768

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 229/623 (36%), Positives = 356/623 (57%), Gaps = 24/623 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           +LL ++P  +  R  R  I+E+ +  I  +TG +S  S     + +  K+ +      I 
Sbjct: 131 ELLQHYPRRYEIRTSR-LINELQDGEIAVVTGTVS-GSQISRGRVKVTKLRIEQDGSYID 188

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
            ++F +    +   F  G  +++TGK++    ++  +    I   + D     I A+Y  
Sbjct: 189 AVWFNQT--HIPRQFPAGSVVSITGKVQ-WNKKVPELLATEIEKGNNDRQRTEIVAIYPE 245

Query: 163 PTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIH---NPRKAKDF 218
              L+    + I+  A +++  + PE    +  Q   +    EA   IH   +P KAK  
Sbjct: 246 TARLNSKAIRFIMRNASAQIEEIFPEVFPDEDCQ--GWLKRPEAIREIHFPSSPEKAK-- 301

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQ 277
                ARERL  +E+L  Q+A+  +R         P+  +GK +  K L  + F  T++Q
Sbjct: 302 ----IARERLIIEEILFFQLAIAELRDPVSGNSS-PVLQKGKELLHKWLHILEFQLTRAQ 356

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +  I +I +DM+    M R++QGDVGSGKT VA+ A+  AV +G Q  +M P  +LA QH
Sbjct: 357 KRVIGEIFRDMATTRGMTRLVQGDVGSGKTAVAMAALLQAVGSGYQGAMMVPTEVLALQH 416

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y  + +  Q   +   ++ G+  ++ R + L  +  G+  +I+GTHAL QD ++Y+ L L
Sbjct: 417 YHSLTRVFQPLGVRAALLLGSQGKSEREEILVDLEQGKIDVIVGTHALIQDQVRYHALGL 476

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           V+ DEQHRFGV+QR +L  K  +PHVL+MTATPIPRTL LT  GD+ +S I E PAGRKP
Sbjct: 477 VVTDEQHRFGVRQRTRLQDKGESPHVLVMTATPIPRTLALTLYGDLQLSVIDEMPAGRKP 536

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           + T  +      ++ + L+  ++ G++ + +CP ++E ++++F S  E+   L E F + 
Sbjct: 537 VMTRKMTERSRAQLEKFLEQQVAAGRQIFVVCPLVQETEKTDFISATEKARVLAERFPAW 596

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A++HGRM   +KE VM  F  G   +L++TTVIEVG++V +A++++IENAE FGLAQL
Sbjct: 597 KVALLHGRMKGQEKEEVMRRFHQGEINILVSTTVIEVGVNVPNATVMVIENAERFGLAQL 656

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG+  S CIL+     S++S  RL+VL  TEDGF IAEEDLK R  GE+LG+
Sbjct: 657 HQLRGRVGRGDHQSFCILVSE---SRDS-ARLNVLCETEDGFKIAEEDLKLRGPGELLGL 712

Query: 637 KQSGMPKFLIAQPELHDSLLEIA 659
           +Q G  +  +A       L+E A
Sbjct: 713 RQHGAAELKLADLARDGRLVEKA 735


>gi|227504426|ref|ZP_03934475.1| possible DNA helicase RecG [Corynebacterium striatum ATCC 6940]
 gi|227199074|gb|EEI79122.1| possible DNA helicase RecG [Corynebacterium striatum ATCC 6940]
          Length = 704

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 238/680 (35%), Positives = 370/680 (54%), Gaps = 78/680 (11%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL-----NDGT 98
           LL ++P  +I  +    +   +E   VT+TG +      +LQ+R   K  L     ++G 
Sbjct: 34  LLSHYPRDYIRHNKEVGLGGANEGDYVTVTGQV-----LRLQQRNTGKAFLLTLSMDNG- 87

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI-----------FHN 147
             IT  FF      L  V  +G ++ ++GK+K  + +  + HP ++           +  
Sbjct: 88  --ITATFF--NAHYLTRVLRQGMRLMLSGKLKFFRGQPQLQHPDFVIIDAGGQSDALYDV 143

Query: 148 SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP------EW-----IEKDLLQK 196
               + P ++A  SL         ++++ +    +PV P       W     I   L   
Sbjct: 144 DDSASGPKLKATGSLRNLSQFGQLEQLLEQEW--IPVYPASGKVTSWYIMGAIHMVLANT 201

Query: 197 KSFP---------SIAEAFNIIHNPRKAKDFEWTSPAR--ERLAYDELLAGQIALLLMRK 245
              P         S+ +A   IH P  A       P R  +RL Y+E L+  I + L ++
Sbjct: 202 PPIPEPLDYRMMVSLDQAVREIHQPTAA------GPERAIQRLKYNEALSIGIVMALRQR 255

Query: 246 --QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
             Q +  + +P  +EG    ++L N+PF  T  Q   I +I  D+S    M+R+LQG+VG
Sbjct: 256 DSQARTAVAMPAILEG-YRDELLANLPFELTAGQRQVIGEIDADLSGTLPMMRLLQGEVG 314

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA  AM  AV+AG QA ++AP  +LA QH   I        + V ++TG+M  A 
Sbjct: 315 SGKTMVATCAMLQAVDAGKQAALLAPTEVLAAQHAASISASVP-AGVTVTLLTGSMRTAQ 373

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL---TQKATA 420
           +R+AL  I  G+A I+IGTHA+ QD+++++ L LV+VDEQHRFGV+QR  L   T++  +
Sbjct: 374 KRQALLDIVSGEADIVIGTHAIIQDTVEFFDLGLVVVDEQHRFGVEQRDSLRNKTREGIS 433

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKV 477
           PH+L+MTATPIPRT+ +T  GD+ +S + E P GRKPI++ ++P      +   + R++ 
Sbjct: 434 PHLLVMTATPIPRTIAMTVFGDLAVSTLKELPGGRKPIQSNVVPEWAPAWVQRALARIRE 493

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTSSIAIIHGRMSDIDKESVMDS 536
            ++ G +AY +CP+IE   E     V E+  S   +  T  + I+HGRM+D  KE VM+ 
Sbjct: 494 EVAAGHQAYIVCPRIE--GEGGVLEVAEQLESGPLQRLT--VDILHGRMAD--KEEVMNR 547

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   +L++TTVIEVG+DV +A++++I  +EHFG++QLHQLRGRVGRG   S C  L+
Sbjct: 548 FSRGETDVLVSTTVIEVGVDVPNATVMLIRESEHFGVSQLHQLRGRVGRGGNASIC--LF 605

Query: 597 HPPLSKN--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD- 653
           H   ++N  ++ R+  + +T  GF +AE DLKQR EG+ILG  QSG  + L       D 
Sbjct: 606 HTTAAENTPTFKRIMQIADTTSGFELAELDLKQRHEGDILGTVQSGTQRSLKLLDLAQDR 665

Query: 654 SLLEIARKDAKHILTQDPDL 673
            ++E    DA  ++ ++P L
Sbjct: 666 DIVERTHDDAFALVQRNPQL 685


>gi|227488102|ref|ZP_03918418.1| possible DNA helicase RecG [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227541499|ref|ZP_03971548.1| possible DNA helicase RecG [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091964|gb|EEI27276.1| possible DNA helicase RecG [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227182781|gb|EEI63753.1| possible DNA helicase RecG [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 702

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 219/668 (32%), Positives = 363/668 (54%), Gaps = 44/668 (6%)

Query: 35  NANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKIL 93
           N   T   +LL  +P  +ID      +    +  IVT  G I++  S   +K  + + + 
Sbjct: 25  NFGITSVPELLLNYPRRYIDSAQGTALIGAQDGDIVTAIGTITRTWSTTTRKGMKIFHVT 84

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           ++DG  E+T +FF   +  L +V  EG ++ VTGK+K  + +  + HP ++  NS     
Sbjct: 85  VDDGGVEVTCVFF--NSAYLSHVLIEGSRVLVTGKVKSYQGKPQLSHPGFLVLNSTHKGT 142

Query: 154 PLIEAVYSLPTGLSVDLFKKI-------IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
             I+ +   P    +   +++       I    S  P +  W     + +++ P I+E  
Sbjct: 143 GQIKELSKYPDAEGI--LRRLTASPWTPIYRGTSSFPSMRMWAATSEVLRQT-PHISEPL 199

Query: 207 NIIHNPRKAKDFEW----------TSP--ARERLAYDELLAGQIALLLMR---KQFKKEI 251
                P +  DF+            SP    +R  Y+E L+  + + L+R      +   
Sbjct: 200 GT--PPEEMVDFDTMLRGMHVPSTVSPYACEQRARYNEALSLSLVMALLRDDQSHRRAHP 257

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
             P++  G   Q+ + ++P++ T  Q+S +++I  D+++   M R+LQG+VGSGKT+VAL
Sbjct: 258 CAPLDDGGSRRQQFIESLPYTLTDGQQSVVQEISSDLAKPTPMSRLLQGEVGSGKTVVAL 317

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           I+M   ++AG Q   +AP  +LAQQH   + +        V  +TG+M  A ++ AL + 
Sbjct: 318 ISMLQVIDAGHQTAFLAPTEVLAQQHARSLTQLLGAVPARVVCLTGSMTVAQKKDALLKT 377

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTA 428
             G+A I++GTHAL QD+++++ L +VIVDEQHRFGV+QR  L  + T    PH+L MTA
Sbjct: 378 ISGEADIVVGTHALIQDTVEFFDLGMVIVDEQHRFGVEQRDMLRNRGTNGITPHLLAMTA 437

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKA 485
           TPIPRT+ +T+ GD+++S +TE P GRKPI++ ++       ++   ER++  + +G +A
Sbjct: 438 TPIPRTIAITAFGDLEVSLLTELPGGRKPIRSAVVFEGNDAWMNRAWERIREEVQQGHQA 497

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           + +CP+I+         V E +  L        ++A++HG++   DKE +M +F  G   
Sbjct: 498 FIVCPRIDGPG-----GVEEVYELLEGQIYPDLAVALLHGKLHPDDKEEIMTAFGKGQID 552

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVGIDV +A+I+++  +E+FG++QLHQLRGR+GRG   S C+          
Sbjct: 553 ILVSTTVIEVGIDVPNATIMMVRESENFGVSQLHQLRGRIGRGGYESWCLFHTLALPDSE 612

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKD 662
            Y RL  + NT DG+ +A  DL+ R+EG+I+G  QSG  K +       D  L+E A K 
Sbjct: 613 QYARLCAIANTNDGYTLATLDLETRQEGDIIGTSQSGSRKQVRLLSFARDGELIEHANKH 672

Query: 663 AKHILTQD 670
           A  ++  D
Sbjct: 673 ADELVHAD 680


>gi|148244970|ref|YP_001219664.1| ATP-dependent DNA helicase RecG [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326797|dbj|BAF61940.1| ATP-dependent DNA helicase RecG [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 688

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 223/640 (34%), Positives = 349/640 (54%), Gaps = 15/640 (2%)

Query: 44  LLFYHPSSFIDRHYRPKISE--ISEERIVTIT-GYISQHSSFQLQKRRPYKILLNDGTGE 100
           LLF  P+ + D+    K+++  I +E ++ +T  Y  Q S+ Q Q        L+D    
Sbjct: 33  LLFQLPTHYQDKTKLAKLNQVQIGDEVLIQLTIKYTEQVSTHQKQ----LLCYLSDSNHR 88

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEA 158
             LL F+   +  K  F  G  I   G+IK  +N + + +P Y   +    N     +  
Sbjct: 89  NLLLRFFYFNQYQKQNFIRGDIIQCFGEIKMGQNSLEIHNPEYRLISKGQANLLEKTLSP 148

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           +Y L   +     KK I  AL  L     +     L   + P++ +A N +H+P+   + 
Sbjct: 149 IYPLTANIRQAQMKKWIDTALEVLQQSDLFDNFKNLTNNTMPTLKQALNTLHHPKVDDNI 208

Query: 219 EWTSP----ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           +  +     +++RL  +EL   +++LL ++ + K +I     ++ ++ QK L  + F  T
Sbjct: 209 KQIANFKHFSQQRLIIEELCTQRLSLLKLKSKRKSKISNIFKIKNRLTQKALDTLKFQLT 268

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           ++Q+S I DI  D+S  + MLR+LQGDVGSGKT++A+ A   A+E G Q  I+AP  ILA
Sbjct: 269 QAQQSCINDINSDLSSNHPMLRLLQGDVGSGKTIIAVFACLQAIENGFQTTIIAPTEILA 328

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            QH +    Y     I +  +T +     + K LE+I    A IIIGTH L Q  + + K
Sbjct: 329 AQHLQGFSNYLTPLGIDIAFLTDSQSAIQKSKQLEKINSDTARIIIGTHVLLQTKVVFDK 388

Query: 395 LILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           L LVI++EQH+FGV Q L L QK+   PH L++TATPIP++L ++   D+D S I E P 
Sbjct: 389 LGLVIINEQHKFGVHQCLSLVQKSHNTPHQLVITATPIPKSLTISVYADLDYSIIDELPT 448

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GR P  T+++  ++ ++VIE++K V + G + YW+C  IEE +     S     N L ++
Sbjct: 449 GRTPTNTIVLGNDKKNKVIEKIKQVCNIGNQVYWVCTLIEESEVLRTESATNTHNYLKKN 508

Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               ++ +I+GRM    K +++  F  G   +L+ATT IE G+++++ S+++IEN+E  G
Sbjct: 509 LEGLTVVLINGRMQKYKKSNIIAQFLKGEIDVLVATTEIEAGVNIINTSLLVIENSERLG 568

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L QLHQLR RVGR  + S CIL+Y  PLS N+  RL +L+ T DGF IA +DL+ R   E
Sbjct: 569 LTQLHQLRSRVGRSLDASICILMYQAPLSYNAIERLDILRKTNDGFKIALKDLELRGPSE 628

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           ILG +Q G+    IA       LL+  +  +K  L  D +
Sbjct: 629 ILGTQQIGITNMKIANIVRDRYLLKQVQSYSKQFLKLDKN 668


>gi|302337840|ref|YP_003803046.1| ATP-dependent DNA helicase RecG [Spirochaeta smaragdinae DSM 11293]
 gi|301635025|gb|ADK80452.1| ATP-dependent DNA helicase RecG [Spirochaeta smaragdinae DSM 11293]
          Length = 707

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 235/717 (32%), Positives = 360/717 (50%), Gaps = 65/717 (9%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           FL  L  P++   GVGKK +  L+++            DLL   P  + DR     I   
Sbjct: 2   FLGELRKPVTVLHGVGKKSTERLARL------GVRHIADLLRLLPRQWEDRSRLVPIVRA 55

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            + R       I  H  F     +  K+ + D T    LL F R        F  G K+ 
Sbjct: 56  GDARPALTVVEIVAHDWFGKPHNQTLKVFVQDETSVAVLLCFNRN-------FLAG-KLP 107

Query: 125 VTGKIKKLKNRIIMVHP-HYIFHNSQDVNFPLIEA------------------------- 158
           V         RI++  P  + F   Q  +F  + A                         
Sbjct: 108 VGA-------RILLYAPLQHRFGELQAASFDFVPAGKYPLTREEDYLSEVPKISGRGGIG 160

Query: 159 ----VYSLPTGLSVDLFKKIIVEALSRL-----PVLPEWIEKDLLQKKSFPSIAEAFNII 209
               VY L  GL+    + ++ +A+          LPE I +D       P +AEA  +I
Sbjct: 161 SILPVYPLTEGLTQGALRDLMQQAMEGFGKFVDDELPEAIRRD----HGLPHLAEALVMI 216

Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
           H PR+ ++ E     R+ LA++EL   Q A+       K++    + +E  +  + +R++
Sbjct: 217 HRPRRIEEPEE---GRKALAFNELFHLQCAVTRRGALRKRKERPSLALETGLVDRCIRDL 273

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PFS T  Q+ A+++I++D+ +   M R+LQGDVGSGKTL AL++    +EAG Q   MAP
Sbjct: 274 PFSLTADQKQAVEEIIEDLKRPYPMARLLQGDVGSGKTLTALLSALPIIEAGYQVAFMAP 333

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH E   +      + + + TG++P   R++ L  +  G+  +++GTH LF  S
Sbjct: 334 TELLARQHAENSARILAPLGVRIALFTGSIPSPARKELLVALQEGEIDLVVGTHTLFSSS 393

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++ +L   I+DEQH+FGV QR  L  K   P +L MTATPIPRT+ LT+ GD+ +S I 
Sbjct: 394 VRFRRLRYCIIDEQHKFGVMQRQGLLDKGEFPDLLTMTATPIPRTMALTAFGDLAVSVIR 453

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P GRKPI T +  +    +V   ++  L  G +AY++ P IEE       S    +  
Sbjct: 454 TMPPGRKPIITHLAKVENRPKVYAAVEKELERGGQAYFVYPLIEEGSREKIDSAESMYRL 513

Query: 510 LHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           L E       IA++H R+ +  KE  M  F +G   +L+AT+V+EVG+D  +AS ++IE+
Sbjct: 514 LREEVFPQRRIALLHSRIDEEIKEREMGRFLSGELDILVATSVVEVGVDAPNASCMVIEH 573

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           AE FGL+ LHQLRGRVGR +  S C L++   L++    RL ++K   DGF+IAEEDLK 
Sbjct: 574 AEQFGLSALHQLRGRVGRSDRQSYCFLVFSEGLTETGKQRLRIMKENNDGFVIAEEDLKL 633

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           R  GE+ G++Q+G+     A       +LE +RK+A  I++ D +L     Q ++ L
Sbjct: 634 RGPGELSGMRQAGVLNLQFADLLKDGEILEASRKEATAIVSGDFELEHADHQVLKRL 690


>gi|15639674|ref|NP_219124.1| ATP-dependent DNA helicase RecG [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025912|ref|YP_001933684.1| ATP-dependent DNA helicase RecG [Treponema pallidum subsp. pallidum
           SS14]
 gi|3914635|sp|P96130|RECG_TREPA RecName: Full=ATP-dependent DNA helicase recG
 gi|1732243|gb|AAB38707.1| RecG [Treponema pallidum]
 gi|3322991|gb|AAC65656.1| DNA recombinase (recG) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189018487|gb|ACD71105.1| DNA recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|291060053|gb|ADD72788.1| ATP-dependent DNA helicase RecG [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 686

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 226/691 (32%), Positives = 371/691 (53%), Gaps = 38/691 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+S  +G GK     L ++      N +   D+L Y P  + DR      S+ +    + 
Sbjct: 9   PVSVLKGTGKVVLAQLERL------NISTIGDILSYWPRLWEDRTQEQMFSQWTLAHRLQ 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           +   ++ H  F   K +  K+++ DG G +  L  +R+   L  +F  G +  V G   +
Sbjct: 63  VRVSVTAHCWFGFGKSKTLKLVVQDGQGCVAELLCFRRN-FLHFMFPVGSEAVVYGSFYE 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIE 190
            K+ ++      I     D     I  VY L  GL     + +I  A+ + +  +   + 
Sbjct: 122 -KDGLLESSSFDI--EKIDCIEKKILPVYPLTKGLKQMKLRMLICAAMDQWIGTVDSELP 178

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA----------- 239
           K +L+K    +  +    +H PR   D    +  +  L ++E  + Q+            
Sbjct: 179 KPILEKYHLLTKRDVLLSMHTPRTLDD---VAKGKHSLIFEEFFSLQMTIGMRSLQKRGR 235

Query: 240 LLLMRKQFKKEIGIPINVE--GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           L L + +  ++  IP  V     + +K+ R +PF  T  Q+  I +I QD+ ++  M R+
Sbjct: 236 LPLTQGESDQQSAIPSVVSELSLLQKKLHRCLPFELTVDQKRVITEITQDLEREEPMARL 295

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKTLVA  +    +E GGQ  ++AP  +LA+QH +   +      I +  +TG
Sbjct: 296 IQGDVGSGKTLVAFFSCLKIIEQGGQVALLAPTELLARQHADTAARLLAPIGIRLAFLTG 355

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           N+    R   LE +  G+ ++++GTHALF  S++Y+ L LVI+DEQHRFGV QR  L QK
Sbjct: 356 NVKSEGRAYLLEALVAGEINLVVGTHALFSKSVRYHDLRLVIIDEQHRFGVLQRSALIQK 415

Query: 418 -------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
                     PH+++M+ATPIPRTL L+  GD+DIS I   P GRKP+ T I    + ++
Sbjct: 416 GREGNPQGKTPHIIMMSATPIPRTLALSVFGDLDISIIKSMPGGRKPVITYIARKTKAEK 475

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDID 529
           V E +   + +G++AY+I P+I +   ++ +SV   +  L  +F   ++A+IH +M++ +
Sbjct: 476 VYEFVGNEIEKGRQAYFIYPRIHDIGLTDLKSVQCMYMYLKNYFARYAVAMIHSKMTEEE 535

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           ++ +M  F  GT  +L+AT+V+EVG+DV +A+ I+IE+AE FGL+ LHQLRGRVGRG+  
Sbjct: 536 QQRIMKYFSEGTVHILVATSVVEVGVDVPNANCIVIEHAERFGLSALHQLRGRVGRGDVQ 595

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK---QSGMPKFLI 646
           S C L++   +++ +  RL ++ +T DGF+IAEEDLK R  G++   K   QSG   F +
Sbjct: 596 SYCFLMHGDEMTECAKRRLKIMGSTADGFVIAEEDLKLRGPGDVGDTKNFEQSGYSGFRV 655

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           A P     +L++AR+ A  +L ++   +  R
Sbjct: 656 ADPVRDYPILQVAREAAFELLRKEKGSSEAR 686


>gi|239818026|ref|YP_002946936.1| ATP-dependent DNA helicase RecG [Variovorax paradoxus S110]
 gi|239804603|gb|ACS21670.1| ATP-dependent DNA helicase RecG [Variovorax paradoxus S110]
          Length = 709

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 221/658 (33%), Positives = 363/658 (55%), Gaps = 30/658 (4%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           R ID   Y P  + D     ++++  +  +  + G +++      + RR     ++DG+ 
Sbjct: 42  RDIDFALYLPMRYEDETRIVRLADTRDGDMAQVEGVVTE-CEVVFRPRRQLIATIDDGSD 100

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIEA 158
              L FF       K +   G ++ V G+++       M+HP      +     P  +  
Sbjct: 101 TCQLRFFNFYPSQQKQLAV-GARVRVRGEMRGGFVGRQMMHPTV---KAAGTALPQALTP 156

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---- 214
           VYS   GL   + ++ +   L+R  VL E I   +  + ++  +  +   +H P      
Sbjct: 157 VYSTIAGLPQPVLRREVRSGLAR-AVLDETIPVQIGWRGAW-DLRSSLTFLHYPTPDVAM 214

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQ---KILRNI 269
           A   + + PA +R+  +ELLA Q++ L  R  +  ++   +P + E + +    ++L  +
Sbjct: 215 ATLEDHSHPAWQRIKAEELLAQQLSQLQARLERAAQRAPMLPSSAEPQASSLHAQLLAVL 274

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T +Q+   ++I +D+ ++  M R+LQGDVGSGKT+VA +A A  ++AG Q  +MAP
Sbjct: 275 PFGLTGAQQRVGEEITRDLGREIPMHRLLQGDVGSGKTVVAALAAARCIDAGFQCALMAP 334

Query: 330 IGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
             ILA QH+     ++        + V  +TG+  +  R      +  G+A ++IGTHA+
Sbjct: 335 TEILAAQHFGKLVGWLDPLLAERGLRVAWLTGSQKKKERDAMSAAVESGEAALVIGTHAV 394

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGD 442
             + +++  L L I+DEQHRFGV QRL L  KA     PH+L+M+ATPIPRTL ++   D
Sbjct: 395 ISEKVRFKNLALAIIDEQHRFGVAQRLALRGKAVGHLEPHLLMMSATPIPRTLAMSYYAD 454

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +D+S + E P GR PI T ++  +R DEVI+R++  +++G++ YW+CP IEE +  + R+
Sbjct: 455 LDVSTLDELPPGRTPIVTKLVADHRRDEVIDRIQAQIAQGRQVYWVCPLIEESEAVDLRN 514

Query: 503 VVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             E  + L +   +++   ++H RM   +K++VM +F     ++L++TTVIEVG+DV +A
Sbjct: 515 ATETRDELADALGAAVNVGLLHSRMPTAEKQAVMAAFTANEIQVLVSTTVIEVGVDVPNA 574

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTED 616
           S+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY P     + + +  RL  +  T D
Sbjct: 575 SLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYAPGDSGRVGEAARARLKAMAETSD 634

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           GF IA  DL+ R  GE LG +QSG P    A       LL+ AR+ A  +L + P+L 
Sbjct: 635 GFEIARRDLEIRGPGEFLGARQSGAPLLRFADLSTDTMLLDWARELAPLMLDKHPELA 692


>gi|167755898|ref|ZP_02428025.1| hypothetical protein CLORAM_01415 [Clostridium ramosum DSM 1402]
 gi|167704837|gb|EDS19416.1| hypothetical protein CLORAM_01415 [Clostridium ramosum DSM 1402]
          Length = 672

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 193/515 (37%), Positives = 298/515 (57%), Gaps = 7/515 (1%)

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           I  +YSL  G++   F+  + +AL+     + + +  +LL K        A N+IH P  
Sbjct: 134 ITPIYSLKEGITQKSFQGYVKKALNFYHGHIQDEVPTNLLIKHHLIHKELALNLIHFPSN 193

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
             D      A   L Y+E L  Q+ +  ++   K  +GI      +   + +  +PF  T
Sbjct: 194 NGD---VKEALRYLKYEEFLRFQLTMQYIKLSRKDNLGIKKQFNRQTLDEFIAQLPFELT 250

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             QE A  +++ D+ ++  M R +QGDVGSGKT+V  I + A   AG Q  +MAP  ILA
Sbjct: 251 FDQEQAALEVINDLQKETMMYRFVQGDVGSGKTVVGAIGLYANYLAGYQGAMMAPTEILA 310

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            QHY  + K  +   I + ++TG++    +++    + +G   I++GTHALFQ+ + Y K
Sbjct: 311 TQHYRSLIKLFKKIDINIALLTGHLSNKEKQRIYNDLENGTIDIVVGTHALFQEKVIYQK 370

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L LVI DEQHRFGV QR  L +K      ++M+ATPIPRTL ++  GD+D+S I   P+G
Sbjct: 371 LGLVITDEQHRFGVNQRKALKEKGKQVDFMVMSATPIPRTLAISIYGDMDVSTIKTMPSG 430

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           RKP+ T +   + +  ++ RLK  L+ G + Y +CP +EE +  + R     +N +  +F
Sbjct: 431 RKPVITEVFKTHSMKPILNRLKEYLASGGQCYVVCPLVEESEAIDSRDATGIYNGMKAYF 490

Query: 515 TS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                I ++HG+M D  K+ +M +FK    ++L++TTVIEVG+DV +A+ I+I NAE FG
Sbjct: 491 KEQYQIGLLHGKMDDETKDQIMAAFKANEIQILVSTTVIEVGVDVSNANWIVIYNAERFG 550

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+Q+HQLRGRVGR ++   C LL +   S+ ++ RL  L+N  DGF ++  DLK R  G+
Sbjct: 551 LSQIHQLRGRVGRSDQQGYCFLLSNSS-SQEAWERLEFLRNCHDGFEVSYYDLKLRGPGD 609

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           ILG +QSG+P F +       ++LEI+RKDA  +L
Sbjct: 610 ILGNQQSGLPVFSVGNIFEDANILEISRKDALELL 644


>gi|283470439|emb|CAQ49650.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 686

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 213/633 (33%), Positives = 354/633 (55%), Gaps = 18/633 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ Y P+ + D      +++  ++  VTI G +          R   K+ ++     I 
Sbjct: 37  DLVLYLPTRYEDNTV-IDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIA 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLK-----NRIIMVHPHYIFHNSQDVNFPLIE 157
           +   +     LK      + ITV GK  ++K     NR+           + DV    +E
Sbjct: 96  VKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFSSQGTQTQENADVQ---LE 152

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            VY +  G+     +  I +AL+ + +  EW+   L +K    ++    N +H+P+    
Sbjct: 153 PVYRIKEGIKQKQIRDQIRQALNDVTI-HEWLTDGLREKYKLETLDFTLNTLHHPKSK-- 209

Query: 218 FEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            E    AR   A+ EL   ++ +  L R +   +  I I+ +    +  +  +PF  T++
Sbjct: 210 -EGLLRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFELTEA 268

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I M A   AG Q+ +M P  ILA+Q
Sbjct: 269 QKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQ 328

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H E +     ++ + V ++TG++    R+  LE++ +G    +IGTHAL QD + ++ + 
Sbjct: 329 HAESLIALFGDS-MNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVG 387

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV QR  L +K    +VL MTATPIPRTL ++  G++D+S I + P GRK
Sbjct: 388 LVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRK 447

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHF- 514
           PI T      + D+V+ ++   L +G++AY ICP IE  +   + ++VV  + SL +++ 
Sbjct: 448 PIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQNYG 507

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            S + ++HG++S  +K+ VM  F N    +L++TTV+EVG++V +A+ ++I +A+ FGL+
Sbjct: 508 VSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLS 567

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
            LHQLRGRVGR ++ S C+L+  P  ++    R++++  T DGF ++E DL+ R  G+  
Sbjct: 568 TLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPGDFF 626

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 627 GVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659


>gi|260887360|ref|ZP_05898623.1| ATP-dependent DNA helicase RecG [Selenomonas sputigena ATCC 35185]
 gi|260862898|gb|EEX77398.1| ATP-dependent DNA helicase RecG [Selenomonas sputigena ATCC 35185]
          Length = 711

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 230/663 (34%), Positives = 355/663 (53%), Gaps = 27/663 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +GVG K    L+KI            DLL Y+P ++ DR     ++ I+      +
Sbjct: 33  LLELKGVGAKKYEALNKI------GLFTVYDLLTYYPRTYEDRRVLTPLAAIAVGEQQAV 86

Query: 73  TGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           TG I   +  + +  R   IL   ++DGTG + + FF +K   LK     G ++   GKI
Sbjct: 87  TGVIRHIA--ERRTGRGIHILSVDIDDGTGFLQVTFFNQK--FLKGKLKAGMQLFAVGKI 142

Query: 130 K-----KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
                 + K ++  V    +     +    ++  VY+    L+   F+ ++      +  
Sbjct: 143 DYAFGGRGKKQMSQVKDFSLMEKGGEAALGIL-PVYAASGSLNQKFFRTLLTGVFQGIGK 201

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E + + + Q+    +  EA+  +H P      E    ARERL ++EL   Q  LLL+R
Sbjct: 202 IVETLPESICQRYRLVAREEAYREVHFPESP---EALHLARERLIFEELYLIQCGLLLLR 258

Query: 245 KQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ + K  G+      ++++     +PF  T+ QE A +DI QDM     M R++QGDV 
Sbjct: 259 RESREKRKGVRHLGASRLSRGAREALPFRLTEDQEKAWRDIRQDMELALPMRRLVQGDVS 318

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT +AL+A+   VE G Q   MAP  ILA+QH++   +  ++  + + ++TG + +  
Sbjct: 319 SGKTALALLALVKTVENGFQGAFMAPTEILARQHFDKFSELLRDLPVRLLLLTGRLSKKE 378

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPH 422
           R  A   I      I+IGTHAL Q+ + +  L LV+ DEQHRFGV+QR  L ++A   P 
Sbjct: 379 REAAYAAIEAHDVDIVIGTHALIQEPVAFAALGLVVTDEQHRFGVEQRAALEKRAHLTPD 438

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+MTATPIPRT+ LT  GD+D+S+I   P GR P++T +    R D +   ++  +  G
Sbjct: 439 MLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRVPVETFVRTPARRDLIYRFVRQEIERG 498

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNG 540
           ++AY +CP +EE    +  S  E +  L       +   ++HG++   +KE+VM  F  G
Sbjct: 499 RQAYVVCPLVEESDTLDLPSAQEVYAELSAGVFREVRCGLVHGKLRGKEKEAVMADFHAG 558

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ TTVIEVG+DV +ASI++IENAE FGLAQLHQLRGRVGRG   S CIL+     
Sbjct: 559 KLDVLVTTTVIEVGVDVPNASIMVIENAERFGLAQLHQLRGRVGRGAHRSYCILV-SAAR 617

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +  +  RL++L++  DGF++AEEDLK R  G+  G  Q G+P   +A       +L  AR
Sbjct: 618 TAAAKKRLALLESVRDGFVLAEEDLKLRGPGQFFGAMQHGLPDLKMADALRDVDILLKAR 677

Query: 661 KDA 663
           + A
Sbjct: 678 RAA 680


>gi|297156905|gb|ADI06617.1| ATP-dependent DNA helicase RecG [Streptomyces bingchenggensis
           BCW-1]
          Length = 743

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 217/662 (32%), Positives = 342/662 (51%), Gaps = 75/662 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100
           DLL ++P  + +R    ++S++  +  VT+   ++      F    ++  ++ L DG+G 
Sbjct: 34  DLLHHYPRRYAERGELTRLSDLPLDEHVTVVAQVADARVHKFDRGTKQRLEVTLTDGSGR 93

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF------- 153
           + L+FF R     +     GR+    GK+   +N   + HP Y      D          
Sbjct: 94  LQLVFFGRGVYTAQKELLPGRRGMFAGKVGVFRNVRQLAHPAYEMLGKDDGAAAVEAWAN 153

Query: 154 ---PLIEAVYSLPT-------GLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
              PL  A   L +       G  +D  +    + L  +  LPE     L   +    + 
Sbjct: 154 QLRPLYPACAQLESWKIEKAVGTLLDSLEATGWDGL--VDALPE----SLRLGRGLAELP 207

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIA 262
           EA   IH PR   D    + AR+RL +DE    Q+AL   R    +   +P    EG + 
Sbjct: 208 EALLKIHRPRTKTDI---AVARDRLKWDEAFVLQVALARRRHADAQLPAVPRAPAEGGLL 264

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
                 +PF+ T+ Q+S  ++I  D++  + M R+LQG+VGSGKT+VAL AM   V++GG
Sbjct: 265 DAFDARLPFTLTEGQQSVSREIFADLATDHPMHRLLQGEVGSGKTMVALRAMLGVVDSGG 324

Query: 323 QAVIMAPIGILAQQHYEFIKKYT-------------QNTQIIVEIITGNMPQAHRRKALE 369
           QA ++AP  +LAQQH+  I +               Q T+++  ++TG+M  A RR+AL 
Sbjct: 325 QAAMLAPTEVLAQQHHRSITEMMGDLAEGGMLGGSEQGTKVV--LLTGSMGAAARRQALL 382

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTA 428
            +  G+A I++GTHAL +D +Q++ L LV+VDEQHRFGV+QR  L  K    PH+L+MTA
Sbjct: 383 DLVTGEAGIVVGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTA 442

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKK 484
           TPIPRT+ +T  GD++ S + + PAGR PI + ++P       +    ER++  ++ G +
Sbjct: 443 TPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKDKPHFLARAWERVREEVAAGHQ 502

Query: 485 AYWICPQIEEKKESNFRSVVERFN--------------------SLHEHFTSS------I 518
           AY +CP+I + +E   +    +                       + E           +
Sbjct: 503 AYVVCPRIGDDEEDEPKGAARKSAKPPVKSPEDEAEKRPPLAVLDVAEQLAKGPLRELRV 562

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            +++GRM    K+ VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQ
Sbjct: 563 EVLYGRMQPEAKDEVMRRFAAGEVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQ 622

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG     C+L+   P    +  RL  +  T DGF ++  DL+QR+EG++LG  Q
Sbjct: 623 LRGRVGRGSAAGLCLLVSEMPEGSPARARLGAVAATLDGFELSRIDLEQRREGDVLGQAQ 682

Query: 639 SG 640
           SG
Sbjct: 683 SG 684


>gi|256851309|ref|ZP_05556698.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 27-2-CHN]
 gi|260660733|ref|ZP_05861648.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 115-3-CHN]
 gi|282933246|ref|ZP_06338633.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 208-1]
 gi|297206179|ref|ZP_06923574.1| DNA helicase RecG [Lactobacillus jensenii JV-V16]
 gi|256616371|gb|EEU21559.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 27-2-CHN]
 gi|260548455|gb|EEX24430.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 115-3-CHN]
 gi|281302750|gb|EFA94965.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 208-1]
 gi|297149305|gb|EFH29603.1| DNA helicase RecG [Lactobacillus jensenii JV-V16]
          Length = 674

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 224/677 (33%), Positives = 380/677 (56%), Gaps = 31/677 (4%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            LN LF P++  +GVG K +  L  +      +     DLLFY P  + D    P + ++
Sbjct: 1   MLNNLFEPVTRLKGVGPKTAAALESL------SIYSIYDLLFYFPYRYDDLEMIP-LDQL 53

Query: 65  SEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           ++ + V + G I+     S F  +K R  +K+ ++    +I ++ F+ +   LK+    G
Sbjct: 54  NDGQKVLLKGIIATEPFVSRFGYKKSRLSFKLRIDH---DIIMVNFFNQP-WLKSQLEVG 109

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           +++ V GK    K  +      ++   S+  +   +  VY +   +      ++I  AL+
Sbjct: 110 KEVAVYGKYNLAKQSLSGFK--FVAAKSEKSS---LSPVYPVNRHIKQKKLIELIKLALA 164

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTSPARERLAYDELLAGQ 237
           +   L + + +++ QK    +  E    +H P+   +AK  + ++  RE   +      Q
Sbjct: 165 QKQELMDIVPEEIRQKYRLMNDQELVEKMHEPKSPNEAKLAKRSAIFREFFIFQV----Q 220

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +ALL MR Q +  +G     +    +K+   +PF  +  Q+  I ++  D+ QK +M R+
Sbjct: 221 LALLTMRPQGR--LGTAKKYDLNEIKKLTNTLPFELSADQKKVINELFADLHQKRQMRRL 278

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VA+  + AA+ AG QA +M P  ILA QH+  I +  +   + + ++T 
Sbjct: 279 LQGDVGSGKTVVAVFGIYAAITAGYQAALMVPTEILANQHFGKIDELLRPFGVRIALLTS 338

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           +     +R+    +A G  +++IGTHAL Q  +++ KL LVI+DEQHRFGV QR KL  K
Sbjct: 339 STKTMEKREIYRELADGTLNVVIGTHALIQPGLKFKKLGLVIIDEQHRFGVNQRQKLMIK 398

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P +L MTATPIPRTL LT+ G++D+S+I   PAGRKPI +  I  + +D+V+ ++K 
Sbjct: 399 GENPDLLAMTATPIPRTLALTAYGEMDVSEIRHLPAGRKPIVSAWITSSHLDQVLAKMKE 458

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDS 536
            LS+G + Y + P IEE +  + ++  E    L  +F    + ++HG+M+  +K+ +M  
Sbjct: 459 QLSQGFQIYVVTPLIEESENIDLKNAKELCLKLQSYFNHEKVVLLHGQMNGEEKDQIMTE 518

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   +L+AT+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG+  S C  + 
Sbjct: 519 FSQGDINILVATSVIEVGVDVPNANMMVIFDADRFGLSQLHQLRGRIGRGKTESFCYFVA 578

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            P  +     R+ ++ +T +GF ++EEDLK R +G++ G  QSG+P+F +       + +
Sbjct: 579 DPK-TDIGKKRMEIISSTSNGFKLSEEDLKLRGQGDLFGKAQSGIPEFRLGDLVNDYNTM 637

Query: 657 EIARKDAKHILTQDPDL 673
            +A+  A+ ++  DPDL
Sbjct: 638 VVAQNVARQLVKTDPDL 654


>gi|25027994|ref|NP_738048.1| putative ATP-dependent DNA helicase recG [Corynebacterium efficiens
           YS-314]
 gi|259506386|ref|ZP_05749288.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
 gi|23493277|dbj|BAC18248.1| putative ATP-dependent DNA helicase recG [Corynebacterium efficiens
           YS-314]
 gi|259166027|gb|EEW50581.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
          Length = 707

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 223/665 (33%), Positives = 353/665 (53%), Gaps = 59/665 (8%)

Query: 46  FYHPSSFIDRHYRPKISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLL 104
           + H  S +D      +    E  +VT+ G +   + S+    +  YKI++   + ++T+ 
Sbjct: 42  YSHHGSGVD------LGAAEEGDLVTVVGEVVHAAKSYTRTGKLLYKIIVAGESEQVTIS 95

Query: 105 FFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI-------------------- 144
           FF      +  +  +G +   TGK+K  + +  + HP +I                    
Sbjct: 96  FF--GAPYVPKLLPQGVRAMFTGKVKFFRRQPQLTHPEFIVIPDAGSGGKVTGTGGMKAL 153

Query: 145 --FHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
             + + ++V   L+E     +YS    ++       I   L  +P +PE +         
Sbjct: 154 AAYGDVEEVARSLVEREYLPIYSGTASMTTWRIMAAIQRVLETMPPVPEPLGD---TPPG 210

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NV 257
            PS  +A   IH+P      E      +RL Y+E L+    + L R         P    
Sbjct: 211 MPSFEQALRGIHDP----GAEGPGAYVDRLKYNEALSLATVMALRRADTASRKAPPCPRA 266

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            G   + ++ ++PF  T+ Q++  ++I  DM Q+  M R+LQG+VGSGKT+V+L+AM  A
Sbjct: 267 LGGQQRALIESLPFPLTEGQKTVTREISADMEQRTPMSRLLQGEVGSGKTIVSLLAMLQA 326

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQ 375
           +++G Q  ++AP  +LA QH   +     +   Q  V ++TG+M    RR+AL  +  GQ
Sbjct: 327 IDSGRQCAMLAPTEVLATQHARSLTTILGDAGVQASVVLLTGSMSTKVRREALLNVISGQ 386

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIP 432
           A I++GTHA+ QD+++++ L LV+VDEQHRFGV+QR +L  K      PH+L+MTATPIP
Sbjct: 387 ADIVVGTHAIIQDTVEFFDLGLVVVDEQHRFGVEQRDRLRTKGREGLTPHLLVMTATPIP 446

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWIC 489
           RT+ +T  GD+ +S + E P GR+PI+T ++P  +   +    ER+   +S G +AY +C
Sbjct: 447 RTIAMTVFGDLAVSTLRELPGGRRPIQTSVVPAEKPAWMKRAWERIGEEVSAGHQAYVVC 506

Query: 490 PQIEEKKESNFRSVVERFNSL-HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           P+IE         VV+  ++L H  F   ++ ++HGRM    K+ VM  F  G   +L++
Sbjct: 507 PRIEGDG-----GVVKIHDTLQHRTFRDLTVGMLHGRMDPETKDQVMRDFATGGIDVLVS 561

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVGIDV +A++++I  A+ FG++Q+HQLRGRVGRG   S C+L     L      R
Sbjct: 562 TTVIEVGIDVANATVMLILEADRFGVSQIHQLRGRVGRGGFASLCLLHTGFALDSPQMGR 621

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHI 666
           L  + NT DGF ++E DLK R+EG+ILG  QSG    L     L D  ++E A  DA  +
Sbjct: 622 LQAIANTSDGFALSELDLKVRQEGDILGTSQSGSDTKLQYLSLLTDQKIIERATADAAEL 681

Query: 667 LTQDP 671
           + +DP
Sbjct: 682 VARDP 686


>gi|330838664|ref|YP_004413244.1| ATP-dependent DNA helicase RecG [Selenomonas sputigena ATCC 35185]
 gi|329746428|gb|AEB99784.1| ATP-dependent DNA helicase RecG [Selenomonas sputigena ATCC 35185]
          Length = 685

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 230/663 (34%), Positives = 355/663 (53%), Gaps = 27/663 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +GVG K    L+KI            DLL Y+P ++ DR     ++ I+      +
Sbjct: 7   LLELKGVGAKKYEALNKI------GLFTVYDLLTYYPRTYEDRRVLTPLAAIAVGEQQAV 60

Query: 73  TGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           TG I   +  + +  R   IL   ++DGTG + + FF +K   LK     G ++   GKI
Sbjct: 61  TGVIRHIA--ERRTGRGIHILSVDIDDGTGFLQVTFFNQK--FLKGKLKAGMQLFAVGKI 116

Query: 130 K-----KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
                 + K ++  V    +     +    ++  VY+    L+   F+ ++      +  
Sbjct: 117 DYAFGGRGKKQMSQVKDFSLMEKGGEAALGIL-PVYAASGSLNQKFFRTLLTGVFQGIGK 175

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E + + + Q+    +  EA+  +H P      E    ARERL ++EL   Q  LLL+R
Sbjct: 176 IVETLPESICQRYRLVAREEAYREVHFPESP---EALHLARERLIFEELYLIQCGLLLLR 232

Query: 245 KQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++ + K  G+      ++++     +PF  T+ QE A +DI QDM     M R++QGDV 
Sbjct: 233 RESREKRKGVRHLGASRLSRGAREALPFRLTEDQEKAWRDIRQDMELALPMRRLVQGDVS 292

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT +AL+A+   VE G Q   MAP  ILA+QH++   +  ++  + + ++TG + +  
Sbjct: 293 SGKTALALLALVKTVENGFQGAFMAPTEILARQHFDKFSELLRDLPVRLLLLTGRLSKKE 352

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPH 422
           R  A   I      I+IGTHAL Q+ + +  L LV+ DEQHRFGV+QR  L ++A   P 
Sbjct: 353 REAAYAAIEAHDVDIVIGTHALIQEPVAFAALGLVVTDEQHRFGVEQRAALEKRAHLTPD 412

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+MTATPIPRT+ LT  GD+D+S+I   P GR P++T +    R D +   ++  +  G
Sbjct: 413 MLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRVPVETFVRTPARRDLIYRFVRQEIERG 472

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNG 540
           ++AY +CP +EE    +  S  E +  L       +   ++HG++   +KE+VM  F  G
Sbjct: 473 RQAYVVCPLVEESDTLDLPSAQEVYAELSAGVFREVRCGLVHGKLRGKEKEAVMADFHAG 532

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ TTVIEVG+DV +ASI++IENAE FGLAQLHQLRGRVGRG   S CIL+     
Sbjct: 533 KLDVLVTTTVIEVGVDVPNASIMVIENAERFGLAQLHQLRGRVGRGAHRSYCILV-SAAR 591

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +  +  RL++L++  DGF++AEEDLK R  G+  G  Q G+P   +A       +L  AR
Sbjct: 592 TAAAKKRLALLESVRDGFVLAEEDLKLRGPGQFFGAMQHGLPDLKMADALRDVDILLKAR 651

Query: 661 KDA 663
           + A
Sbjct: 652 RAA 654


>gi|229829117|ref|ZP_04455186.1| hypothetical protein GCWU000342_01202 [Shuttleworthia satelles DSM
           14600]
 gi|229792280|gb|EEP28394.1| hypothetical protein GCWU000342_01202 [Shuttleworthia satelles DSM
           14600]
          Length = 683

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 236/684 (34%), Positives = 365/684 (53%), Gaps = 29/684 (4%)

Query: 13  LSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           L   +G+G+K      K  I   G        DLL ++P S+      P +S   + +  
Sbjct: 7   LRDLKGIGEKTEKLYQKLDIYTVG--------DLLLHYPRSY---QVYPPLSNYGDLKPG 55

Query: 71  TITGYISQ-HSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
                +++  S  +++K R   + L     G+ +L   + +   +++    G      GK
Sbjct: 56  ASVALLARLKSPAKVRKGRRMDVTLATAFFGDRSLDLVWFRMPYIRSQLAVGEAYVFYGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++    R+ +        +         + VYSL  GL+ +  KK +         L E+
Sbjct: 116 LEAEGERLKISQAQIYSPDEYSALMQQPQPVYSLTGGLTNNNVKKAVQTVFDSGIRLGEY 175

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQF 247
           + +++L+     S   A   IH P    DF+    AR+RL YDE     + L   R  + 
Sbjct: 176 LPQEILEGNQLASYEWALKQIHFP---IDFDHLLRARKRLVYDEFFFFLLELGRNRLDEA 232

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
            +E   PI    ++ + +   +PF  T  Q+ A+ DIL D+S      R++QGDVGSGKT
Sbjct: 233 PEENRHPITETAQM-EDVKERLPFDLTPGQKKALADILGDLSAPLVSQRLIQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQH-YEFIK---KYTQNTQIIVEIITGNMPQAH 363
           +VA +AM A +E G QAVIMAP  +LA+QH  EFI+   +Y     ++   +TG      
Sbjct: 292 IVAFLAMLACLENGFQAVIMAPTEVLARQHEKEFIRLCQEYALPYSVVC--LTGASTAKE 349

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R+   RI+   A  I+GTHAL Q+++++  L LV+ DEQHRFGV+QR  L  K  +P+V
Sbjct: 350 KREIQSRISEEDALFIVGTHALIQETVEFRDLALVVTDEQHRFGVRQRKILASKGQSPNV 409

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL +   GD+++S I E P+GR+ IK  II  ++     + +   +  G+
Sbjct: 410 LVMSATPIPRTLAMILYGDMNLSVIRELPSGRRKIKNAIIRSDKKKSAWQFVAREVLAGR 469

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IE    S   +V++   +L + +    ++ ++HGRM   DK+ VM+ F +G 
Sbjct: 470 QAYVICPLIEASDVSEDENVMDYAQALKDFYGDQITVGLLHGRMKSKDKDKVMEDFASGK 529

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +AS+++IENA  FGLAQLHQLRGRVGRG + + CI +     S
Sbjct: 530 IQVLVSTTVVEVGVNVPNASVMLIENANRFGLAQLHQLRGRVGRGADQAYCIFIDSSD-S 588

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    RL +L ++ DGF IA EDLK R  G+  GI+QSG   F IA       +L++A +
Sbjct: 589 EEISRRLEILVHSNDGFAIASEDLKLRGPGDFFGIRQSGDLDFKIADIYQDADVLQMASE 648

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
           D+K IL  DP L       IR  L
Sbjct: 649 DSKEILEADPRLVFEEHAGIRSFL 672


>gi|254373789|ref|ZP_04989272.1| ATP-dependent DNA helicase RecG [Francisella novicida GA99-3548]
 gi|151571510|gb|EDN37164.1| ATP-dependent DNA helicase RecG [Francisella novicida GA99-3548]
          Length = 679

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 224/638 (35%), Positives = 360/638 (56%), Gaps = 20/638 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
           F GVG+     L+K  N  + N     DLL   P  + D  +   I+ +   +   I G 
Sbjct: 6   FNGVGEATIKALAKC-NIHDPN-----DLLTIFPKDYKDTRFITPINHLVAGKRSLIQGR 59

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           ++ + +++   ++  +  +ND TG  +++ F      L  +      +   GK++     
Sbjct: 60  VT-NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILERSEYVRCYGKVE-FSLS 116

Query: 136 IIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194
             MVHP +   N+ +        AVY L   +   L  K+I++ L    V    I   LL
Sbjct: 117 PQMVHPEWATVNNGECALKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLL 174

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
           ++ +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K   K     
Sbjct: 175 RRFNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQAPQ 234

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           I +      +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA 
Sbjct: 235 IFLTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIAA 294

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
            AAV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R++L++I   
Sbjct: 295 YAAVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKIKDQ 354

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMTA 428
           +  +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K+++      PH L+++A
Sbjct: 355 KDCVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIISA 414

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +  G++ YW+
Sbjct: 415 TPIPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYWV 474

Query: 489 CPQIEEKKESNF-RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP +EE +  +F + V   +  L E     ++ +++G M   DK   M +FK     +L+
Sbjct: 475 CPLVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVLV 534

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+    
Sbjct: 535 ATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGKR 594

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RLS+++ ++DGF +AE+DL+ R  G+ILG +QSG+  F
Sbjct: 595 RLSLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTF 632


>gi|86141562|ref|ZP_01060108.1| ATP-dependent DNA helicase recG [Leeuwenhoekiella blandensis
           MED217]
 gi|85832121|gb|EAQ50576.1| ATP-dependent DNA helicase recG [Leeuwenhoekiella blandensis
           MED217]
          Length = 700

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 249/708 (35%), Positives = 382/708 (53%), Gaps = 63/708 (8%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG   +  L   +         + DLL   P+ +ID+     IS++    
Sbjct: 5   LQTPIDYLKGVGPNRANLLRSELGIHT-----YQDLLNLFPNRYIDKTQYYTISQLQPTS 59

Query: 69  I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT- 126
             V I G ++   +    + +       D TG + L++F    + LK +  E  KI V  
Sbjct: 60  ADVQIIGKVTHIKTAGEGRSKRLVATFIDQTGAMELVWF----KGLKWIR-ESLKINVPY 114

Query: 127 ---GKIKKLKNRIIMVHPHYIFHNSQDVN--------FPLIEAVYS------LPTGLSVD 169
              GK+++  +   + HP                   +P  E + +      +  GL   
Sbjct: 115 VAFGKVQRFGSSYSIAHPDLELLEEHKKGLRIAMQPVYPSTEKLSNRGITNRVMNGLMQT 174

Query: 170 LFKKI---IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226
           LF+++   I E+LS      E I   L   K  P   EA+  IH P++    E  + A+ 
Sbjct: 175 LFQEVHKSIEESLS------ESIRNAL---KLIPR-REAYLNIHFPQQQ---ETLAKAQF 221

Query: 227 RLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILR-NIPFSPTKSQESAIKDI 284
           RL ++EL   Q+ LL+  +  K++I G      G         ++PF  T +Q+  +K+I
Sbjct: 222 RLKFEELFFIQLQLLVKNQLHKQKIKGYAFEAIGDYFTTFYNEHLPFELTGAQKRVVKEI 281

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
             D+ +  +M R+LQGDVGSGKT+VAL+ M  A++   QA +MAP  ILA QH++ I + 
Sbjct: 282 RNDLGKPAQMNRLLQGDVGSGKTIVALMTMLIALDNNFQACLMAPTEILAIQHFQGISEL 341

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
            +   + + ++TG+     RR+  + +  G  HI+IGTHAL +D +++  L L ++DEQH
Sbjct: 342 CEKLDLKIALLTGSSKTKERREIHQSLEDGSLHILIGTHALLEDKVKFKNLGLAVIDEQH 401

Query: 405 RFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           RFGV QR KL  K    PH+L+MTATPIPRTL ++  GD+D+S I E P GRK IKTV  
Sbjct: 402 RFGVAQRSKLWHKNELPPHILIMTATPIPRTLAMSVYGDLDVSVIDELPPGRKAIKTV-- 459

Query: 464 PINRIDEVIERLKVV------LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--- 514
             +R D    RLKV       + +G++ Y + P I+E +  +++ +++ + S+   F   
Sbjct: 460 --HRYDN--NRLKVFGFIRDEIKKGRQIYVVYPLIQESEALDYKDLMDGYESIAREFPMP 515

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              I+I+HG+M   DK+  M+ F NG  ++++ATTVIEVG++V +AS++IIE+AE FGL+
Sbjct: 516 DYQISIVHGQMKPADKDYEMNRFVNGETQIMVATTVIEVGVNVPNASVMIIESAERFGLS 575

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG + S CIL+    LS++S TRL  +  T DGF IAE DLK R  G+I+
Sbjct: 576 QLHQLRGRVGRGADQSYCILMTGHKLSEDSKTRLQTMTQTNDGFEIAEVDLKLRGPGDIM 635

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           G +QSG+    IA     + +++IAR  A  +L +DP L       +R
Sbjct: 636 GTQQSGVLNLKIADIVKDNEVMKIARNYASALLKEDPQLAQPENLPVR 683


>gi|237738008|ref|ZP_04568489.1| ATP-dependent DNA helicase recG [Fusobacterium mortiferum ATCC
           9817]
 gi|229419888|gb|EEO34935.1| ATP-dependent DNA helicase recG [Fusobacterium mortiferum ATCC
           9817]
          Length = 684

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 220/607 (36%), Positives = 360/607 (59%), Gaps = 16/607 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEI-SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           D+L+Y P ++ DR    KI E+  EE +V     ++  +       +  K    DG+G I
Sbjct: 36  DMLYYFPRAYDDRTNIKKIGELRGEEYVVLKATLMTVTAPPTRSGLKMVKATATDGSGII 95

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII-MVHPHY-IFHNSQDVNFPLIEAV 159
            L++F  +   L+     G +    G++K+    I  +V+P + +  N + ++   I  +
Sbjct: 96  ELVWF--QMPYLRKTLKIGEEYIFIGQVKR--GYIFQIVNPEFKLSSNQKRLDEGEILPI 151

Query: 160 YSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           YS    L  +  +K++ + L + L V+ E I +++++K       EA   IH P+ +K+ 
Sbjct: 152 YSSSKELPQNSLRKLMEKMLNTTLAVIEENIPEEIIKKYKLMGRKEALREIHFPKNSKNL 211

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK--IAQKILRNIPFSPTKS 276
           E    A+ R A +ELL  ++ +L  R +   +     ++E K  + +  L ++PF  T +
Sbjct: 212 E---EAKRRFAVEELLVLEMGILQKRFEVDNQNIERYHLEDKKTLVKAYLSSLPFELTNA 268

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+  I +I +D++    + R++QGDVGSGKT V+++ +   +E   Q V+MAP  ILA Q
Sbjct: 269 QKRVITEIYKDLANGRVVNRLVQGDVGSGKTAVSMVLLLYMLENSYQGVLMAPTEILAVQ 328

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY  +K   +   + VE++TG+     +++ LE IA+G   I+IGTHAL ++S+ +++L 
Sbjct: 329 HYLSVKDKFEKLGVRVELLTGSFTGKKKQRLLEDIANGDVGIVIGTHALIEESVVFHRLG 388

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           ++I+DEQHRFGV QR  L  K    ++++M+ATPIPR+L L+  GD+D+S I E P GRK
Sbjct: 389 MIIIDEQHRFGVLQRKALRDKGVLANLVVMSATPIPRSLALSIYGDLDVSVIDELPPGRK 448

Query: 457 PIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           PI+T  I  +  I+ + + +   LS+G++AY+I P IEE ++ + +S  E    + +   
Sbjct: 449 PIRTKWIATDEEIETMYDFIDKKLSQGRQAYFIAPLIEESEKLSAKSTAELMEEVEKFLP 508

Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           +  I ++HG+M + +K+ +M  FKN    +L++TTVIEVG+DV ++SII+I NAE FGL+
Sbjct: 509 NYKIGVLHGKMKNSEKDEIMSRFKNKELDILVSTTVIEVGVDVPNSSIIVINNAERFGLS 568

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
            LHQLRGRVGRG+  S C L+     +  S  RL V++ T+DGF IAEEDL+ RK GEI 
Sbjct: 569 ALHQLRGRVGRGQYQSYCFLVSKTD-NATSKARLQVMEETQDGFKIAEEDLRLRKSGEIF 627

Query: 635 GIKQSGM 641
           G +QSG+
Sbjct: 628 GTRQSGL 634


>gi|332525200|ref|ZP_08401375.1| ATP-dependent DNA helicase RecG [Rubrivivax benzoatilyticus JA2]
 gi|332108484|gb|EGJ09708.1| ATP-dependent DNA helicase RecG [Rubrivivax benzoatilyticus JA2]
          Length = 679

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 233/646 (36%), Positives = 353/646 (54%), Gaps = 24/646 (3%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           R IDL  + P  + D      ++ + +     + G + +    +++ RR   + L D +G
Sbjct: 24  RDIDLALHLPMRYEDETRIEPVAALHDGDTAQVEGVV-RSCQVEIRSRRQLVVRLADDSG 82

Query: 100 EITLLF--FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-- 155
           E+TL F  FY  T+  K +    R             R  MVHP        D + PL  
Sbjct: 83  ELTLRFLHFYPSTQ--KQLAVGSRVRVRGEVRVGFLGRE-MVHPTV---KRVDEHTPLAA 136

Query: 156 -IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            +  VY     L     +K +   LSR P+  + +    +     P + EA  ++H+P  
Sbjct: 137 SLTPVYPASAQLPQAYLRKAVAAGLSRAPL--DEVLPPGVVPPGLPPLREALRLLHHPPP 194

Query: 215 AKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
                   + + PA +RL +DELLA Q++ L  R + +  +  P   +  +  ++   +P
Sbjct: 195 GIAMGALEDHSHPAWQRLKFDELLAQQLSQLQARLE-RSRLAAPALRDSTLPARLRTVLP 253

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F+ T +QE  + +I  D++    M R+LQGDVGSGKT+VA +A A A+ +G Q  +MAP 
Sbjct: 254 FTLTAAQERVVAEIAADLALAQPMHRLLQGDVGSGKTVVAALAAATAIGSGWQCALMAPT 313

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA+QH++ +  +     + V  +TG+     R   L +IA GQA +++GTHA+ Q+ +
Sbjct: 314 EILAEQHFKKLVDWLLPLGLEVAWLTGSRKGKQRAAMLAKIASGQAALVVGTHAVIQEDV 373

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            + +L L +VDEQHRFGV QRL L +K    A  PH+L+M+ATPIPRTL +T   D+ +S
Sbjct: 374 VFARLGLAVVDEQHRFGVAQRLALRRKLELQALEPHLLMMSATPIPRTLAMTYFADLAVS 433

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I E P GR P+ T +   ++ + V+E+++  ++ G++ YW+CP +EE +  + ++    
Sbjct: 434 TIDELPPGRTPVVTKVFADDKREMVVEKIRDEVARGRQVYWVCPLVEESEHIDLQNATAT 493

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              L E     S+ ++HGRM+  DK + M  F  G  +LL+ATTVIEVG+DV +AS+++I
Sbjct: 494 HAQLSEALPGVSVGLLHGRMAAADKAATMAEFSAGRMQLLVATTVIEVGVDVPNASLMVI 553

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           E+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL  +  T DGF IA  DL
Sbjct: 554 EHAERFGLAQLHQLRGRVGRGAVASVCVLLYTAPLSPTGKARLRAMAETTDGFEIARRDL 613

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
             R  GE +G +QSG      A     D+LLE AR+ A  +L + P
Sbjct: 614 DIRGPGEFMGSRQSGDALLRFADLAEDDALLERARELAPKLLREQP 659


>gi|227832989|ref|YP_002834696.1| ATP-dependent DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182523|ref|ZP_06041944.1| ATP-dependent DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454005|gb|ACP32758.1| ATP-dependent DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 698

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 232/665 (34%), Positives = 361/665 (54%), Gaps = 52/665 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           +LL ++P  +I  +    +    +   VTITG I         K   + + ++ G   + 
Sbjct: 33  ELLSHYPRDYIRHNKDVGLGGAEDGDHVTITGVIEDLRVKHTSKAMVFILYMDSG---VQ 89

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
             FF      ++ V   G ++ ++GK+K  +    + HP ++  +       L+++    
Sbjct: 90  ASFF--NAHYVQRVLGRGMRVMLSGKLKYFRGYPSLQHPDFLILDPGRYQESLLDSTTGQ 147

Query: 163 PTGLSVDLFKKIIVEA-LSR--LPVLP------EW-----IEKDLLQKKSFP-------- 200
            TG    L +   +E  L R  +PV P       W     I K L      P        
Sbjct: 148 GTGSLKKLSQFGSLETFLQREWIPVYPASGKVTSWYIMGAIHKVLEHTPPIPEPLDYRMM 207

Query: 201 -SIAEAFNIIHNPRKAKDFEWTSPAR--ERLAYDELLAGQIALLLMRKQFKKEIGIPIN- 256
            ++ +A   IH P          P R  +RL Y+E L+  + + L ++  K     P+  
Sbjct: 208 VTLDQAVREIHEPGD------NGPERAIQRLKYNEALSVGLVMALRQRDVKARTATPMPA 261

Query: 257 -VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
            +EG    ++L  +PF+ T  Q   I +I  D+     M+R+LQG+VGSGKTLVA  AM 
Sbjct: 262 ILEG-YRDELLSGLPFALTDGQRRVIGEIDADLCGTAPMMRLLQGEVGSGKTLVATCAML 320

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
            AV+AG QA ++AP  +LA QH   I     +  + V ++TG+M  A +RKAL  I  G+
Sbjct: 321 QAVDAGKQAALLAPTEVLAAQHGASISASVPDG-VTVTVLTGSMKTAEKRKALLEIVSGE 379

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL---TQKATAPHVLLMTATPIP 432
           A I+IGTHA+ QDS++++ L LVIVDEQHRFGV+QR  L   T++ T+PH+L+MTATPIP
Sbjct: 380 ADIVIGTHAIIQDSVEFFDLGLVIVDEQHRFGVEQRDSLRTKTREGTSPHLLVMTATPIP 439

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWIC 489
           RT+ +T  GD+ +S + E P GRKPI + ++P  +   +   IER++  + +G +AY +C
Sbjct: 440 RTIAMTVFGDLAVSTLKELPGGRKPILSAVVPEWKPEWVRRAIERIREEVDKGHQAYIVC 499

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           P+IE +      S+  R   L       + ++HG+M   DK+ VM+SF  G   +L+ATT
Sbjct: 500 PRIEGEGGVETMSLQLRNLPLR---GLRVEMLHGKMP--DKDQVMESFARGEIDVLVATT 554

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVG+DV +A++++I  +E+FG++QLHQLRGRVGRG   S C+L         S+ R+ 
Sbjct: 555 VIEVGVDVPNATVMLIRESENFGVSQLHQLRGRVGRGGNESVCLLHTTAEPDSKSFRRIK 614

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILT 668
            + +T  GF +AE DL+QR EG+ILG  QSG  + L     ++D  ++E    DA  ++ 
Sbjct: 615 AIADTPSGFDLAELDLQQRHEGDILGTLQSGTKRTLKLLDLINDRDIVERTHSDAAALVE 674

Query: 669 QDPDL 673
           ++P+L
Sbjct: 675 RNPEL 679


>gi|320008320|gb|ADW03170.1| ATP-dependent DNA helicase RecG [Streptomyces flavogriseus ATCC
           33331]
          Length = 753

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 227/708 (32%), Positives = 365/708 (51%), Gaps = 90/708 (12%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100
           DLL ++P  + +R     ++E+  +  VT+   ++      F   + +  ++ L DG+G 
Sbjct: 34  DLLHHYPRRYEERGRLTALTELPLDEHVTVVAQVADARIMMFNNGRGKRLEVTLTDGSGR 93

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-------- 152
           + L+FF             GR+    GK+     ++ + HP Y   +++D +        
Sbjct: 94  LQLVFFGHGVHKPHKELLPGRRAMFAGKVSVFNRKMQLAHPTYQLLDARDDDAGDVTEAV 153

Query: 153 ----------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSI 202
                     +P  + + S     +VD       EA+  LP         L + + F  +
Sbjct: 154 DAFAGQLLPIYPACKQLDSWRIAKAVDTVLPSAQEAVDPLP-------PALREGRGFVPL 206

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI----NVE 258
            EA   IH P+   D    + AR+RL +DE    Q+AL   R+++  +  +P     +V 
Sbjct: 207 PEALLRIHRPQTKADI---AAARDRLRWDEAFVLQVAL--ARRRYA-DTQLPAKARRSVP 260

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G +       +PF+ T+ Q+    +I   ++ ++ M R+LQG+VGSGKTLVAL AM   V
Sbjct: 261 GGLLDAFDATLPFTLTEGQQKVTGEIFDALATEHPMHRLLQGEVGSGKTLVALRAMLRVV 320

Query: 319 EAGGQAVIMAPIGILAQQHY--------EFIKKYT---------------------QNTQ 349
           +AGGQA ++AP  +LAQQH+        E  +K+                          
Sbjct: 321 DAGGQAAMLAPTEVLAQQHHRSVTEMMGELAEKWGLWRDAPPQEGGGGRPEGMPGGSGLG 380

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
             V ++TG+M  A RR+AL  +  G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+
Sbjct: 381 TKVVLLTGSMGVAARRRALLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVE 440

Query: 410 QRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           QR  L  K    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI + ++P    
Sbjct: 441 QRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKDK 500

Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR----------------SVVERFN 508
              +    ER++  +  G +AY +CP+I ++ E   R                +V+E   
Sbjct: 501 PHFLSRAWERVREEVESGHQAYVVCPRIGDEDEPAGRKTKKAAEEDGDKRPPLAVLEIAE 560

Query: 509 SLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            L +   +   + ++HGRM   DK+ VM  F  G   +L+ATTVIEVG++V +A++++I 
Sbjct: 561 QLAKGPLAGLRVEVLHGRMPADDKDDVMRRFAAGQADVLVATTVIEVGVNVPNATVMVIM 620

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           +A+ FG++QLHQLRGRVGRG     C+L+     +  +  RLS +  T DGF ++  DL+
Sbjct: 621 DADRFGVSQLHQLRGRVGRGSAPGLCLLVSEAHEASPARARLSAVAATLDGFELSRIDLE 680

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673
           QR+EG++LG  QSG+   L     + D  ++  AR++A  ++  DP L
Sbjct: 681 QRREGDVLGQAQSGVRSSLRVLSVIDDEEVIAAAREEAVRVVADDPGL 728


>gi|42519402|ref|NP_965332.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii NCC 533]
 gi|41583690|gb|AAS09298.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii NCC 533]
          Length = 679

 Score =  353 bits (907), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 222/675 (32%), Positives = 372/675 (55%), Gaps = 30/675 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           LF P++  +GVG K +  L+ + IN          DLLFY P  + D    P + +I + 
Sbjct: 8   LFEPVTELKGVGAKTATALASLGINT-------IYDLLFYFPFRYDDLETIP-LDQIEDG 59

Query: 68  RIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           + V + G +      S F  +K R  +KI ++    +I ++ F+ +   LK+    G+++
Sbjct: 60  QKVLLKGMVVTDPFVSRFGYRKTRLSFKIKIDH---DIIMVNFFNQP-WLKDKVESGKEV 115

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182
            V GK +  +          +    +D  F     +YS+   L  +  +K+I  AL   +
Sbjct: 116 AVYGKYQVARQSF---SGFKLVAEKKDSGFA---PIYSVNRHLKQNKLQKLIDLALQEAI 169

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E I   + +K    S       +H+P+   +      AR    + E    Q+ L  
Sbjct: 170 NEVGETIPASIREKYRLLSDRVLVEKMHHPKNGNE---AKIARRSAIFREFFLFQMQLAQ 226

Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +  Q  ++  G+    +    ++++  IPF  +  Q+  + +I  D+  K +M R+LQGD
Sbjct: 227 LLSQRNEDAPGVEKKYDLAAVKELIEEIPFELSDDQKKVVNEIFADLHSKRQMRRLLQGD 286

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA+ A+ AAV AG QA +M P  ILAQQH+  I +  +   + V ++TG+   
Sbjct: 287 VGSGKTVVAVFAIYAAVTAGYQAALMVPTEILAQQHFAKIDELLKPLGVRVALLTGDTKD 346

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +++    +A G  +++IGTHAL Q  + +  L LVI+DEQHRFGV QR  L +K  AP
Sbjct: 347 LEKKEIYRELADGTINVVIGTHALIQKEVHFKNLGLVIIDEQHRFGVNQRNTLIKKGDAP 406

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L MTATPIPRTL LT  GD+ +S+I   P GRKP+ +     +++ EV++ ++  L +
Sbjct: 407 DILAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLREVLDLMRSQLDK 466

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G + Y + P I E ++S+ ++  +    +  +F   ++ ++HG+M    K  +MDSF  G
Sbjct: 467 GFQIYVVTPLISESEKSDLKNAEDLQAKIAHYFKDENVVLLHGQMKGDQKNEIMDSFAAG 526

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ +  P  
Sbjct: 527 KINILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK- 585

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    R++++ +T +GF +AEEDLK R EG++ G  QSG+P+F +       + L  A+
Sbjct: 586 TEIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNALVTAQ 645

Query: 661 KDAKHILTQDPDLTS 675
           K+A++++  DP L +
Sbjct: 646 KEARNLIKSDPALVN 660


>gi|237734862|ref|ZP_04565343.1| ATP-dependent DNA helicase [Mollicutes bacterium D7]
 gi|229382190|gb|EEO32281.1| ATP-dependent DNA helicase [Coprobacillus sp. D7]
          Length = 672

 Score =  353 bits (906), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 193/515 (37%), Positives = 297/515 (57%), Gaps = 7/515 (1%)

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           I  +YSL  G++   F+  + +AL+     + + +  +LL K        A N+IH P  
Sbjct: 134 ITPIYSLKEGITQKSFQGYVKKALNFYHGHIQDEVPTNLLIKHHLIHKELALNLIHFPSN 193

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
             D      A   L Y+E L  Q+ +  ++   K  +GI      +   + +  +PF  T
Sbjct: 194 NDD---VKEALRYLKYEEFLRFQLTMQYIKLSRKDNLGIKKQFNRQTLDEFIAQLPFELT 250

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             QE A  +++ D+ ++  M R +QGDVGSGKT+V  I + A   AG Q  +MAP  ILA
Sbjct: 251 FDQEQAALEVINDLQKETMMYRFVQGDVGSGKTVVGAIGLYANYLAGYQGAMMAPTEILA 310

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            QHY  + K  +   I + ++TG++    +++    + +G   I++GTHALFQ+ + Y K
Sbjct: 311 TQHYRSLIKLFKKIDINIALLTGHLSNKEKQRIYNDLENGTIDIVVGTHALFQEKVIYQK 370

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L LVI DEQHRFGV QR  L +K      ++M+ATPIPRTL ++  GD+D+S I   P+G
Sbjct: 371 LGLVITDEQHRFGVNQRKALKEKGKQVDFMVMSATPIPRTLAISIYGDMDVSTIKTMPSG 430

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           RKP+ T +   + +  ++ RLK  L+ G + Y +CP +EE +  + R     +N +  +F
Sbjct: 431 RKPVITEVFKTHSMKPILNRLKEYLASGGQCYVVCPLVEESEAIDSRDATGIYNGMKAYF 490

Query: 515 TS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                I ++HG+M D  K+ +M +FK    ++L++TTVIEVG+DV +A+ I+I NAE FG
Sbjct: 491 KEQYQIGLLHGKMDDETKDQIMAAFKANEIQILVSTTVIEVGVDVSNANWIVIYNAERFG 550

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+Q+HQLRGRVGR ++   C LL +   S+ +  RL  L+N  DGF ++  DLK R  G+
Sbjct: 551 LSQIHQLRGRVGRSDQQGYCFLLSNSS-SQEALERLEFLRNCHDGFEVSYYDLKLRGPGD 609

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           ILG +QSG+P F +       ++LEI+RKDA  +L
Sbjct: 610 ILGNQQSGLPVFSVGNIFEDANILEISRKDALELL 644


>gi|149277295|ref|ZP_01883437.1| ATP-dependent DNA helicase [Pedobacter sp. BAL39]
 gi|149232172|gb|EDM37549.1| ATP-dependent DNA helicase [Pedobacter sp. BAL39]
          Length = 701

 Score =  353 bits (906), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 246/690 (35%), Positives = 367/690 (53%), Gaps = 36/690 (5%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           F   L   +   +GVG K +  L K +      +     LL + P  +IDR    K+ E+
Sbjct: 2   FAASLDTTIEFLKGVGPKRAELLQKELGIYTYEQ-----LLNFFPFRYIDRTRFYKVKEL 56

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           + +   V I G I+       + +R     L D TG I L++F     + +NV   G+  
Sbjct: 57  NPDLPYVQILGRITGKEQIGEKHKRRIVARLTDETGSIELVWFQSLKWVDENVM-RGKVY 115

Query: 124 TVTGKIKKLKNRIIMVHPH---YIFHNSQDVNFPLIEAVYSLPTGL--------SVDLFK 172
            V GK         + HP    Y    +   N  L + VY+    L         +   +
Sbjct: 116 IVFGKPTLFNGSFSISHPELEPYPRPTTMTGNLRL-QPVYNSTEKLKKFFLDSKGIQKLQ 174

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            +I+E    L  + E +   +LQK    S  +A   IH P   KD E    A  RL ++E
Sbjct: 175 TLIIE--QHLSEIRETLPMPVLQKYQMVSRKQALLNIHFP---KDVEALKAAERRLKFEE 229

Query: 233 LLAGQIALLLMRK----QFKKEIGIPINVEGKIAQKILRNI-PFSPTKSQESAIKDILQD 287
           L   Q+ LL  +K    +FK   G      G       ++I PF  T +Q+  IK+I  D
Sbjct: 230 LFFIQLQLLHNKKLRELKFK---GHRFEAVGSRVNTFYKDILPFEMTGAQKRVIKEIRMD 286

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
             +  +M R++QGDVGSGKT+VAL++M  A + G QA +MAP  ILA+QH+E I      
Sbjct: 287 TQRGIQMNRLVQGDVGSGKTVVALMSMLLANDNGFQACMMAPTEILARQHHESITSLLDG 346

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
               V ++TG+  +  R K    + +G+  I++GTHAL +D + +  L +V++DEQHRFG
Sbjct: 347 KLSKVAVLTGSTTKKQRTKLHAELQNGEIDILVGTHALIEDKVVFKNLGMVVIDEQHRFG 406

Query: 408 VQQRLKLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           V+QR KL +K T P H+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T      
Sbjct: 407 VEQRAKLWRKNTVPPHILVMTATPIPRTLAMTLYGDLDVSVIDELPVGRKPIETRHFFEG 466

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHG 523
           +   +   +K  +++G++ Y + P I+E ++ +   +      + + F      I+I+HG
Sbjct: 467 QRLRMFGFMKAEIAKGRQVYIVYPLIKESEKLDLLHLEAGIEQISDQFPRPEYQISIVHG 526

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +MS+ DK+  M  F +G  ++++ATTVIEVG++V +ASI++IENAE FGL+QLHQLRGRV
Sbjct: 527 KMSNADKQFEMQQFIDGKSQIMVATTVIEVGVNVPNASIMVIENAERFGLSQLHQLRGRV 586

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG E S CIL+    LS +   RL  +  T +GF I+E DL+ R  G+I G +QSG+ +
Sbjct: 587 GRGAEQSYCILMSGNKLSADGRLRLDTMVKTNNGFEISEIDLQLRGPGDITGTQQSGVLE 646

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             +A       +L+ AR     IL +DP L
Sbjct: 647 LKLADLATDQLILQEARSTVMDILNKDPQL 676


>gi|331004261|ref|ZP_08327739.1| ATP-dependent DNA helicase RecG [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330411426|gb|EGG90838.1| ATP-dependent DNA helicase RecG [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 683

 Score =  353 bits (906), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 221/667 (33%), Positives = 366/667 (54%), Gaps = 24/667 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFID-LLFYHPSSFIDRHYRPKISEISEERIVT 71
           +   +GVG+K + +L K+       + R I  LL ++P  +++     KISE++++    
Sbjct: 6   VKNIKGVGEKTAQYLEKL-------DIRTIKGLLKHYPVRYLEYKAPTKISEVNKDEEAV 58

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I ++ SF  Q R+     + D    I ++++   +  L+    +G      GK  K
Sbjct: 59  IKATIVKNISFTGQNRKISTTKITDYIDVIDVIWY--NSPYLRATIKQGESYVFVGKFSK 116

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPEWI 189
            +++  + HP     +  +      + VY+L  G++ +  +K+I   L  +      E++
Sbjct: 117 -RSKSTLEHPIIYTLDEYEKKIGSFKPVYALTAGINNNAMEKLIKSGLEYIDEDDFAEYL 175

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKD-FEWTSPARERLAYDELLAGQIAL-LLMRKQF 247
              +L+K S  S   +   IHNP      FE    +++RLA+D+       + LL  K+ 
Sbjct: 176 PAFVLEKFSLESRLNSIKNIHNPLNTSCLFE----SKKRLAFDDFFRFLYGVKLLKNKRL 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K +    +    +  ++I   +PF  T SQ+  + +IL DMS      R++QGDVGSGKT
Sbjct: 232 KVKSKNIVAKSTEYLEEIKSVLPFKLTSSQDRVVDEILDDMSSGIVTNRLVQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRR 365
           ++ALI++  AV++G Q V+M P  +LA+QH++ +  +    +    + I+TG+M +    
Sbjct: 292 VIALISLYMAVKSGFQGVVMVPTEVLAKQHFKSMSGFLNRLKSPPRIGILTGSMTKKEHL 351

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
              E+I  G+  I+IGTHAL  +++++  L LV+ DEQHRFGV+QR  L+ K    HVL+
Sbjct: 352 LMYEKIESGEIDILIGTHALLVENVKFKNLGLVVTDEQHRFGVRQRTTLSDKGENVHVLV 411

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPRTL +   GD+DIS I  KP GR P+K  +I  N  ++    + + + +G +A
Sbjct: 412 MSATPIPRTLAIILYGDLDISTIESKPVGRLPVKNAVITENDREKAYRHILLEIKKGHQA 471

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP +EE +     +V++    + + F+ +  + ++HGRM   +K+ +M  + N    
Sbjct: 472 YIICPMVEESENIEAENVLDYGKKIADKFSQNCKVEVLHGRMQQKEKDDIMSRYVNKEID 531

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG+DV +A++I++ENAE FGLA LHQLRGRVGR  E+ S  +      S  
Sbjct: 532 ILVSTTVIEVGVDVPNATVIMVENAERFGLATLHQLRGRVGRS-ELQSYAIFVRTSSSNI 590

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL ++ N+ DGF IA  DL  R  GE+ G+ QSG P F IA     + + E+A++  
Sbjct: 591 AKKRLEIIGNSNDGFYIASRDLVLRGPGELFGLAQSGEPDFGIADIYNDNDIFEMAKEAV 650

Query: 664 KHILTQD 670
             I  +D
Sbjct: 651 DMIQCED 657


>gi|301066660|ref|YP_003788683.1| recG-like helicase [Lactobacillus casei str. Zhang]
 gi|300439067|gb|ADK18833.1| RecG-like helicase [Lactobacillus casei str. Zhang]
          Length = 718

 Score =  353 bits (906), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 221/675 (32%), Positives = 369/675 (54%), Gaps = 25/675 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P++   GVG K    L+ +      +  R  DLLFY P  + D   +  ++E +
Sbjct: 39  LMALTDPVTVLPGVGPKREAGLASL----GIHTIR--DLLFYFPYRYDDLKVK-DLAEAA 91

Query: 66  EERIVTITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           ++  +T+ G +      S F   + R   + L      I + FF +    LK+ F  G +
Sbjct: 92  DQEKLTVKGIVVTDPVISRFGPHRSR-VNVKLQIERSVILVTFFNQP--WLKDRFQMGDE 148

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR- 181
             + GK      R  +     +   SQD   P + A+Y++   + +     +I  A  R 
Sbjct: 149 AAIFGKWDA--KRRSLTGMKILATQSQDQ--PSMAAIYTVNKNVRMGTLLDLIKAAWERD 204

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              + + +   + +     S A+  + +H P    +      AR    + E    Q+ + 
Sbjct: 205 RQNINDLVPASIREHYRLMSDAQLVHGMHFPDTPAE---AKAARRTGVFREFFLFQLQIQ 261

Query: 242 LMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            +++       G+ I  + +  + ++  +PF+ T +Q+  + +I  DM + N M R+LQG
Sbjct: 262 ALKQLNANSSNGLAIPYDNQALRALIATLPFALTNAQKRVVNEICADMRRPNHMNRLLQG 321

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA I + AAV AG QA +M P  +LA+QH+  + K  ++  + + ++TG+  
Sbjct: 322 DVGSGKTIVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTS 381

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+ L  +  G+ ++IIGTHAL Q  + ++ L LV++DEQHRFGV QR  L +K   
Sbjct: 382 TKKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVIDEQHRFGVNQRKILQEKGQK 441

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P +L MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +  N+ID+V   ++  + 
Sbjct: 442 PDLLSMTATPIPRTLAITAYGEMDVSTIDELPAGRKPIATTWLRKNQIDQVYRIIREQVQ 501

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538
            G + + I P I E ++ + ++  + F  + +   +   +A++HG+M   +K+ +M +F 
Sbjct: 502 SGSQVFAITPLIAESEKIDLQNAEQLFVDMQKAVGNLGPVALLHGQMKPDEKDQIMRAFS 561

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L++TTV+EVG+DV +A+++ I +A+ FGL+QLHQLRGRVGRG++ + C+L+  P
Sbjct: 562 DGKIAVLVSTTVVEVGVDVPNATVMAIFDADRFGLSQLHQLRGRVGRGQKAAQCLLIADP 621

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             ++    R+ ++  T DGFL+A++DL+ R  G+I G KQSG+P+F +A P      LE 
Sbjct: 622 K-NEQGIARMEIMTKTNDGFLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEA 680

Query: 659 ARKDAKHILTQDPDL 673
           A+K    I   DP L
Sbjct: 681 AQKIVAQIFKTDPHL 695


>gi|15806915|ref|NP_295639.1| ATP-dependent DNA helicase RecG [Deinococcus radiodurans R1]
 gi|6459700|gb|AAF11469.1|AE002030_8 DNA helicase RecG [Deinococcus radiodurans R1]
          Length = 784

 Score =  353 bits (906), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 225/648 (34%), Positives = 353/648 (54%), Gaps = 21/648 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL-----NDG 97
           D+L  +P    DR   P ++++ E + VT+ G +   S F+ +  RP  ++L        
Sbjct: 134 DVLHAYPHRHEDRRALPDLADVEEGQKVTVMGTVV--SKFR-RAPRPGMLILEIVLETPS 190

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL--KNRIIMVHPHYIFHNSQDVNFPL 155
            G +   +F +    ++    EG ++ +TG+ KK   + ++ + H   +      ++   
Sbjct: 191 GGRVKATWFNQP--WVEKQLREGARLVLTGRAKKFGRQTQLSVEHMETVDKAEGSLSTRR 248

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
           I  VY    G+S +  +K   +AL   P L +++     +K     + +A   IH PR  
Sbjct: 249 IVGVYDAKEGISQEFLRKAAYKALEAAP-LDDYLPAHWRRKYGLTDLGDALWGIHFPR-- 305

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
            D    + A  RL +DE L  ++ +LL  +    + G      G+   K    +PF  T 
Sbjct: 306 -DEAQLARAHGRLRFDEYLFLELRMLLQGEDAVLQ-GKRFEARGEDINKFEAALPFRFTN 363

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q   + +I  DM    +M R++QGDVGSGKT VA  A+  AV  G Q  +MAP  ILA+
Sbjct: 364 AQRRVLLEITDDMRSDQQMARLVQGDVGSGKTAVAACALYLAVRDGYQGALMAPTEILAR 423

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY  +  Y     + V ++ G M    + +   RIA G   +++GT AL Q+++Q+  L
Sbjct: 424 QHYANLCGYLGQLDVRVGLLIGAMTPKAKLEMQTRIAEGDVDVVVGTQALIQENVQFDNL 483

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L +VDE+HRFGVQQR +L   A+ P VL+M+ATPIPR+L LT+ GD+++S I E P GR
Sbjct: 484 GLAVVDEEHRFGVQQRRRLL--ASRPDVLVMSATPIPRSLALTAYGDLELSIIDELPPGR 541

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            PI+T +I      +    +   + +G++AY +   IEE +     +  +  + L     
Sbjct: 542 TPIETKLIQDTARQQAYGFVMGQIRQGRQAYVVTALIEENENLELLAATQLADDLKTILP 601

Query: 516 SS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I ++HG+MS  +K+ VM+ F+     +L++TTVIEVG+DV ++++++IENAE FGLA
Sbjct: 602 EARIDLLHGKMSAAEKDYVMERFRAHEFDILVSTTVIEVGVDVPNSTVMVIENAERFGLA 661

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG   S C+++     S  +  RL +++ + DGF+IAE DLK R  GEI 
Sbjct: 662 QLHQLRGRVGRGSLQSYCVMIAG-ETSLKTRKRLKIIEGSTDGFVIAEADLKLRGPGEIR 720

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           G +QSG+P   +A       ++E AR+ AKHIL  DP L   R Q +R
Sbjct: 721 GTRQSGIPDLRLADLANDADIIEQARELAKHILANDPRLEHPRLQYLR 768


>gi|325105500|ref|YP_004275154.1| ATP-dependent DNA helicase RecG [Pedobacter saltans DSM 12145]
 gi|324974348|gb|ADY53332.1| ATP-dependent DNA helicase RecG [Pedobacter saltans DSM 12145]
          Length = 699

 Score =  353 bits (906), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 243/690 (35%), Positives = 377/690 (54%), Gaps = 36/690 (5%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            P+   +GVG + +  L K I         + DLL Y+P  +ID+    KI+EI  +   
Sbjct: 6   TPIEYLKGVGPQRAEVLKKEIGVFT-----YQDLLHYYPFRYIDKTRYYKINEIGFD--F 58

Query: 71  TITGYISQHSSFQLQKRRPYKILLN---DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            +   + +  SF++   +  K L+    D TGE+ L++F +  + ++          V G
Sbjct: 59  PLVQILVRLKSFEVIGEKQSKRLVARVVDETGELELVWF-KGLKWIEKTLKINHLYVVFG 117

Query: 128 KIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGL-SVDLFKKIIVEALSRL-- 182
           K      +  M HP     +  S++     ++ VYS    L    L  K I + +S L  
Sbjct: 118 KPTFFNGKPQMAHPEMELFSKESKERGNLSLQPVYSSTEKLKQFSLDSKGIQKLMSNLLD 177

Query: 183 -------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
                   VLP +I    L+K    S  +A   IH P  +      S A+  L ++EL  
Sbjct: 178 TVFSEIEEVLPSYI----LEKYKLLSRRDALLQIHFPTNSTVL---SRAQATLKFEELFF 230

Query: 236 GQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            Q+ LL ++  +  K +  +   V  K        +PF  T +Q+  +K+I  D  +  +
Sbjct: 231 IQLKLLKIKHLRTLKFKGNVFATVGNKFNYFYENLLPFQLTGAQKRVLKEIRFDSQKGIQ 290

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++QGDVGSGKT+VAL++M  A++ G QA +MAP  ILA QHY  IK    +  + + 
Sbjct: 291 MNRLVQGDVGSGKTVVALMSMLLAIDNGFQACMMAPTEILATQHYASIKSMLPDDFVNIA 350

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+  +  R+K LE +  G  +I++GTHAL ++++ +  L L ++DEQHRFGV+QR K
Sbjct: 351 LLTGSTKKKDRKKILEDLVIGTLNILVGTHALIEETVVFKHLGLAVIDEQHRFGVEQRAK 410

Query: 414 LTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L +K    PHVL+MTATPIPRTL ++  GD+D+S I E PAGRKPI+T+ +  N+   + 
Sbjct: 411 LWKKNLIPPHVLVMTATPIPRTLAMSLYGDLDVSVINELPAGRKPIQTIHLYENQRLRMF 470

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDID 529
             ++  +++G++ Y + P I+E  + + +++ +    L   F      I+I+HG++   +
Sbjct: 471 GYMRREIAKGRQVYVVYPLIQESAKLDLKNLQDGIEVLSREFPLPQYKISIVHGQLKPDE 530

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE  M  F  G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E 
Sbjct: 531 KEFEMQRFIKGQTQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGSEQ 590

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S CIL+    LSK    RL  +  T DGF I+E DL+ R  G+I G +QSG+    +A  
Sbjct: 591 SFCILMSKDKLSKEGKVRLETMVKTNDGFEISEVDLQLRGPGDIEGTQQSGILDLKLADL 650

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
               ++L  ARK    I+  DP+L +   Q
Sbjct: 651 TQDQNILHEARKTVLEIMEADPELQNAEHQ 680


>gi|124515677|gb|EAY57186.1| putative ATP-dependent DNA helicase (RecG) [Leptospirillum rubarum]
          Length = 713

 Score =  353 bits (906), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 234/691 (33%), Positives = 375/691 (54%), Gaps = 52/691 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PL     +GKK +  L        A     +DLL+  P  + DR   P I ++   +
Sbjct: 8   LVSPLHVVPDIGKKRAEKLEL------AGYRTVLDLLYCFPFRYEDRRAAPSIRQLVTGK 61

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL-----LNDGTGEITLLFFYRKTEMLKNV------F 117
               +G++++    + +  R +++      L DG+GE+  ++F ++  +LK +      F
Sbjct: 62  P---SGFVARVRDIRKKALRNFRVPVIEADLEDGSGEVRAVWFGQEY-LLKTLPPGSMGF 117

Query: 118 FEGR-KITVTGKIKKLKNRII-MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175
           F G+ +I+    +  L++ ++  +        S  VN   I  VY    GLS   F+K I
Sbjct: 118 FYGKPEISDYDGLLTLRSPVVEKMDEEKKGQKSFHVN--RIVPVYHESHGLSSSFFRKTI 175

Query: 176 VEALSRL-----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFEW----TSP 223
              L+ L       LP  +   L     FPSI      +H PR      D +       P
Sbjct: 176 GVVLTALWGNVFEPLPHAVLTSLGIMGWFPSIVG----MHFPRTLPVEGDIDSLLLPEYP 231

Query: 224 ARERLAYDELLAGQIALLLMRKQFK-----KEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            R R  ++EL   +  +   +K+ +     +    P N E   ++    ++P+  T++Q+
Sbjct: 232 PRRRFIFEELFFLEFLMGYKKKEIRLSSRSRNRQTPDNAETAFSE----SLPYVLTEAQK 287

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A ++I  DMS+ + M R+L GDVGSGKT+VA   +  +   G Q+ +MAP  +LAQQHY
Sbjct: 288 RACREIASDMSKSSPMNRLLLGDVGSGKTVVAAWGVYLSFRGGMQSALMAPTEVLAQQHY 347

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             I    +   I + ++T ++ ++ +R  +E +  G    ++GTHAL QD++ +  L  +
Sbjct: 348 ASITSLLKPHGIRIALLTQSVKKSEKRALMEAVHRGDVDCVVGTHALIQDALVFSSLGYI 407

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDEQH+FGV+QR  L QK   P VL+MTATPIPR+L L+  GD+D+S + E+P GR+P+
Sbjct: 408 VVDEQHKFGVEQRKTLIQKGENPDVLVMTATPIPRSLALSYFGDLDLSVLDERPPGRQPV 467

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           KT I+  NR +    E +   L  G++ + + P IEE +E N R     F  L + + S 
Sbjct: 468 KTEIVTKNRRECFWDESVAPALDRGEQVFVVYPLIEESQEENIRDATSMFAVLSQKWPSV 527

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S  ++ G+M   +K +VM++F++G  +LL++TTV+EVG+D+  A+++++ENAE FGLAQL
Sbjct: 528 STGLLTGKMPWEEKAAVMEAFRSGKIRLLVSTTVVEVGVDIPGATVMVVENAERFGLAQL 587

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGR+GRG    +C L+  P  S+ S  RL +L  TEDGF +AEEDL+ R  GE +G 
Sbjct: 588 HQLRGRIGRGSLPGTCYLIPGPDASRESVGRLEILVRTEDGFTVAEEDLRLRGPGEFIGT 647

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +QSG+P F +A       +L +AR+ A   L
Sbjct: 648 RQSGLPMFQVASLVRDVDILLLAREQASMFL 678


>gi|218296433|ref|ZP_03497176.1| ATP-dependent DNA helicase RecG [Thermus aquaticus Y51MC23]
 gi|218243227|gb|EED09758.1| ATP-dependent DNA helicase RecG [Thermus aquaticus Y51MC23]
          Length = 767

 Score =  353 bits (905), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 221/653 (33%), Positives = 356/653 (54%), Gaps = 32/653 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGE 100
           D+L ++P  + DR   P +  + + +  T++  +      +  K+  +  ++   D  G 
Sbjct: 118 DVLHHYPRRYEDRRALPGVRYLEDGQKATLSVKVLAKELVRTPKKGMQLVQVKAMDAWGW 177

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
              L ++ +  +L  +  EG  + VTG++++ +N + ++  H+    ++ ++   I  +Y
Sbjct: 178 RLALVWFNQPWVLSQIE-EGATLIVTGRVQR-RNGVQLLVEHFEDEGTESLSTGRIVPIY 235

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
               G+     ++ +  AL     LP+ +E    +  +    ++A   IH P   +D E 
Sbjct: 236 PAKEGVGQAFLRRTVHRALEMALPLPDPVEP-YREGLALMPYSQALRAIHFP---EDEEA 291

Query: 221 TSPARERLAYDELL---------AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
              A  RL +DE L         AG + L           G    VE    +   + +PF
Sbjct: 292 LKKALLRLKFDEYLLLELKALLDAGGVVL-----------GRAFRVEEAWVEAFKKALPF 340

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T++QE  + +I QDM    +M R+LQGDVGSGKT+VA  A+  A   G Q  +MAP  
Sbjct: 341 PLTRAQERVMAEIAQDMQSPRQMARLLQGDVGSGKTVVAAFALYLAAMNGAQGALMAPTE 400

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+QH++ + +Y     + VE++ G+ P   R   L R+  G+A + +GTHAL Q+ ++
Sbjct: 401 ILARQHFQNLTRYLFPLGVRVELLLGSTPAREREAILARLRSGEAQVAVGTHALIQEGVE 460

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +  L L +VDE+HRFGV QR  L + A T P VL+M+ATPIPR+L LT  GD+++S + E
Sbjct: 461 FQDLGLAVVDEEHRFGVLQRRALLKMAKTPPDVLVMSATPIPRSLALTLYGDLEVSVLDE 520

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P GR P+KT ++P     +     +  + +G + + + P IEE  E + ++    +  L
Sbjct: 521 MPPGRTPVKTKVLPHRLRLQAYAFAREEIKKGHQVFVVAPAIEE-SELDLKAATLLYEEL 579

Query: 511 HEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 + IA++HG+M   +KE+VM++F+ G   LL++TTVIEVG+D+  A++II+ENAE
Sbjct: 580 QGLLPEARIALLHGKMPAREKEAVMEAFRQGAYDLLVSTTVIEVGVDIPRATLIIVENAE 639

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            FGLAQLHQLRGRVGRG      I L     S+ +  RL VL+ + DGF IAE DLK R 
Sbjct: 640 RFGLAQLHQLRGRVGRGGLPGYAIFLAG-EASQKTMKRLKVLEASTDGFYIAEMDLKLRG 698

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
            GE+ G +QSG P+  +        ++E AR  AK I+ +DPDL+  + Q+++
Sbjct: 699 PGELRGTRQSGYPELRLGDLAEDTEVIERARALAKAIVEEDPDLSLPKHQALK 751


>gi|161507718|ref|YP_001577679.1| ATP-dependent DNA helicase RecG [Lactobacillus helveticus DPC 4571]
 gi|160348707|gb|ABX27381.1| ATP-dependent DNA [Lactobacillus helveticus DPC 4571]
          Length = 676

 Score =  353 bits (905), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 221/683 (32%), Positives = 370/683 (54%), Gaps = 42/683 (6%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +       + G+       DLLFY P  + +    P + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTA------ADLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 56

Query: 67  ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + V + G+++     S F  +K R  +K+ ++    ++ ++ F+ +   LK+    G +
Sbjct: 57  GQKVVLKGFVATEPFVSRFGYKKSRLSFKMRIDH---DVIMVNFFNQP-WLKSKIEIGEE 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV---------YSLPTGLSVDLFKK 173
           + + GK    +  +      +I     D     I  V          SL   L++D+F  
Sbjct: 113 VAIYGKYNVARQSLSAFK--FIAAKENDSGMAPIYPVNRHVKQKKLVSL-INLAIDVFLD 169

Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            + +      ++PE I     +K    +  E    +H+P+ + +    + A+    + E 
Sbjct: 170 QVRD------IVPENIR----EKYRLLTDQEIIQKMHHPKNSTE---ANLAKRSAIFREF 216

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
              ++ L L+     K+ G P N + K   ++  ++PF  +  Q+  + +I  DM    +
Sbjct: 217 FIFELQLALLANHDGKQAGYPKNYDLKEIAQLTSSLPFELSDDQKEVVNEIFADMHSSGQ 276

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA+ A+ AA+ AG Q  +M P  ILA QH++ I +  +   + V 
Sbjct: 277 MRRLLQGDVGSGKTVVAVYAIFAAITAGYQVALMVPTEILATQHFKKIDELLRPLGVRVA 336

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TGN     RR+    +  G  +++IGTHAL Q+++ + KL LVI+DEQHRFGV QR  
Sbjct: 337 LLTGNTKTLERREIYRELMDGTINVMIGTHALIQENVIFKKLGLVIIDEQHRFGVGQRQA 396

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K   P +L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +      ++ +V +
Sbjct: 397 LINKGDQPDILAMTATPIPRTLALTVYGDMTVSEIHHMPAGRKPIISSWKTSTQMKDVYQ 456

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTSSIAIIHGRMSDIDKES 532
           +++  L +G + Y + P I E +  + ++  E    L H+     + ++HG+M    K+ 
Sbjct: 457 KMQDQLDQGFQIYAVTPLITESETLDLKNAEELHAKLSHDFPDQKVVLLHGQMPGPKKDE 516

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M +F +G   +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C
Sbjct: 517 IMIAFASGEINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGKTQSYC 576

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           + +  P  + +   R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F +     +
Sbjct: 577 VFVADPK-TDSGKARMKIIAATNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNN 635

Query: 653 DSLLEIARKDAKHILTQDPDLTS 675
            + L +A+K A+ ++ QDP L  
Sbjct: 636 YNTLVVAQKVARDLVQQDPKLAD 658


>gi|329667073|gb|AEB93021.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii DPC 6026]
          Length = 679

 Score =  353 bits (905), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 221/675 (32%), Positives = 373/675 (55%), Gaps = 30/675 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           LF P++  +GVG K +  L+ + IN          DLLFY P  + D    P + +I + 
Sbjct: 8   LFEPVTELKGVGAKTATALASLGINT-------IYDLLFYFPFRYDDLETIP-LDQIEDG 59

Query: 68  RIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           + V + G +      S F  +K R  +K+ ++    +I ++ F+ +   LK+    G+++
Sbjct: 60  QKVLLKGMVVTDPFVSRFGYRKTRLSFKMKIDH---DIIMVNFFNQP-WLKDKVESGKEV 115

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182
            V GK +  +  +       +    +D  F     +YS+   L  +  +K+I  AL   +
Sbjct: 116 AVYGKYQVARQSL---SGFKLVAEKKDSGFA---PIYSVNRHLKQNKLQKLIDLALEEAI 169

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E I   + +K    S       +H+P+   +      AR    + E    Q+ L  
Sbjct: 170 NEVGETIPASIREKYRLLSDRVLVEKMHHPKNDNE---AKIARRSAIFREFFLFQMQLAQ 226

Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +  Q  ++  G+    +    ++++  IPF  +  Q+  + +I  D+  K +M R+LQGD
Sbjct: 227 LLSQRNEDAPGVEKKYDLAAVKELIEEIPFELSDDQKKVVNEIFADLHSKRQMRRLLQGD 286

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA+ A+ AAV AG QA +M P  ILAQQH+  I +  +   + V ++TG+   
Sbjct: 287 VGSGKTVVAVFAIYAAVTAGYQAALMVPTEILAQQHFAKIDELLKPLGVRVALLTGDTKD 346

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +++    +A G  +++IGTHAL Q  + +  L LVI+DEQHRFGV QR  L +K  AP
Sbjct: 347 LEKKEIYRELADGTINVVIGTHALIQKDVHFKNLGLVIIDEQHRFGVNQRNTLIKKGDAP 406

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L MTATPIPRTL LT  GD+ +S+I   P GRKP+ +     +++ EV++ ++  L +
Sbjct: 407 DILAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLREVLDLMRSQLDK 466

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G + Y + P I E ++S+ ++  +    +  +F   ++ ++HG+M    K  +MDSF  G
Sbjct: 467 GFQIYVVTPLISESEKSDLKNAEDLQAKIAHYFKDENVVLLHGQMKGDQKNEIMDSFAAG 526

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ +  P  
Sbjct: 527 KINILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK- 585

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    R++++ +T +GF +AEEDLK R EG++ G  QSG+P+F +       + L  A+
Sbjct: 586 TEIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNALVTAQ 645

Query: 661 KDAKHILTQDPDLTS 675
           K+A++++  DP L +
Sbjct: 646 KEARNLIKSDPALVN 660


>gi|227534888|ref|ZP_03964937.1| DNA helicase RecG [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227187644|gb|EEI67711.1| DNA helicase RecG [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 698

 Score =  353 bits (905), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 220/675 (32%), Positives = 370/675 (54%), Gaps = 25/675 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P++   GVG K    L+ +      +  R  DLLFY P  + D   +  ++E +
Sbjct: 19  LMALTDPVTVLPGVGPKREAGLASL----GIHTIR--DLLFYFPYRYDDLKVK-DLAEAA 71

Query: 66  EERIVTITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           ++  +T+ G +      S F   + R   + L      I + FF +    LK+ F  G +
Sbjct: 72  DQEKLTVKGIVVTDPVISRFGPHRSR-VNVKLQIERSVILVTFFNQP--WLKDRFQMGDE 128

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR- 181
             + GK      R  +     +   SQD   P + A+Y++   + +     +I  A  R 
Sbjct: 129 AAIFGKWDA--KRRSLTGMKILATQSQDQ--PSMAAIYTVNKNVRMGTLLDLIKAAWERD 184

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              + + +   + +     S A+  + +H P    +      AR    + E    Q+ + 
Sbjct: 185 QQNINDLVPASIREHYRLMSDAQLVHGMHFPDTPAE---AKAARRTGVFREFFLFQLQIQ 241

Query: 242 LMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            +++       G+ I  + +  + ++  +PF+ T +Q+  + +I  DM + N M R+LQG
Sbjct: 242 ALKQLNANSSNGLAIPYDNQALRALIATLPFALTNAQKRVVNEICADMRRPNHMNRLLQG 301

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA I + AAV AG QA +M P  +LA+QH+  + K  ++  + + ++TG+  
Sbjct: 302 DVGSGKTVVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTS 361

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+ L  +  G+ ++IIGTHAL Q  + ++ L LV++DEQHRFGV QR  L +K   
Sbjct: 362 TKKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVIDEQHRFGVNQRKILQEKGQK 421

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P +L MTATPIPRTL +T+ G++D+S I E PAGRKPI T+ +  N+ID+V   ++  + 
Sbjct: 422 PDLLSMTATPIPRTLAITAYGEMDVSTIDELPAGRKPIATMWLRKNQIDQVYRIIREQVQ 481

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538
            G + + I P I E ++ + ++  + F  + +   +   +A++HG+M   +K+ +M +F 
Sbjct: 482 SGSQVFAITPLIAESEKIDLQNAEQLFVDMQKAVGNLGPVALLHGQMKPDEKDQIMRAFS 541

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L++TTV+EVG+D+ +A+++ I +A+ FGL+QLHQLRGRVGRG++ + C+L+  P
Sbjct: 542 DGKIAVLVSTTVVEVGVDIPNATVMAIFDADRFGLSQLHQLRGRVGRGQKAAQCLLIADP 601

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             ++    R+ ++  T DGFL+A++DL+ R  G+I G KQSG+P+F +A P      LE 
Sbjct: 602 K-NEQGIARMEIMTKTNDGFLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEA 660

Query: 659 ARKDAKHILTQDPDL 673
           A+K    I   DP L
Sbjct: 661 AQKIVAQIFKTDPHL 675


>gi|329769811|ref|ZP_08261212.1| hypothetical protein HMPREF0433_00976 [Gemella sanguinis M325]
 gi|328838173|gb|EGF87791.1| hypothetical protein HMPREF0433_00976 [Gemella sanguinis M325]
          Length = 670

 Score =  352 bits (904), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 231/669 (34%), Positives = 364/669 (54%), Gaps = 27/669 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +N L   + T +GVG KY     K +N  +    R  D+L+  P             +  
Sbjct: 2   INILEKSVGTIKGVGAKYL----KTLNELDIYTVR--DVLYNIPYRVSSSTDFSSSVK-D 54

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGT--GEITLLFFYRKTEMLKNVFFEGRKI 123
            E++VT TG +    S Q    R  +   +  T  G + +++F +    LK    EGR+I
Sbjct: 55  NEKVVT-TGKVETRVSTQFYGNRRSRSFFSLATPSGSVKIVYFNQM--YLKKNIIEGREI 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V G      N I      +     + ++   IE  Y L  G++   F K++ EA + L 
Sbjct: 112 VVKGTYNSANNTITASSISFNTDEKKQISGDKIEVFYHLKQGITQKRFAKLVDEAFNMLD 171

Query: 184 VLPEWIEKDLLQK--KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              E +  DL+ +  K    +    + +H P+ A++F+    AR+  A+ EL   Q+ L 
Sbjct: 172 --HENVILDLVPENFKGIWKLDRILHTLHFPKNAEEFD---KARKMFAFHELFDYQLKLQ 226

Query: 242 LMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L     + E     I++  +  ++   ++PFS T +Q   I +I+ D+ Q  +M R+LQG
Sbjct: 227 LQNINSRVEDNRYAISISNQDIKEFKESLPFSLTSAQNRVIDEIVDDLEQPYKMDRLLQG 286

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT VA   +  A+++G Q  IMAP  ILA QH+E   ++ ++  I V ++T + P
Sbjct: 287 DVGSGKTAVAAATLYGAIKSGYQTAIMAPTEILANQHFETFFEFFKDLNISVALLTSSTP 346

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           +  R   L  +  G+  +I+GTH+L Q+ +++  L  VI DEQHRFGV+QR  L+ K  A
Sbjct: 347 KKERNIILSLLESGEIELIVGTHSLIQEDVKFSSLKYVITDEQHRFGVKQRQILSNKGEA 406

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            + L+MTATPIPR+L +T + DI +S I E PAGRK +KT         +V++ +++ L 
Sbjct: 407 VNSLMMTATPIPRSLAITLITDIKVSTIDELPAGRKKVKTYKANNKSFYKVLDNIRMELD 466

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFK 538
            G++ Y +CP IEE ++ + ++V E + ++ E+      I+++HG+MS+ +K+ +++ F 
Sbjct: 467 NGRQGYVVCPLIEESEKMDLQNVEETYENIREYLPDEYKISVLHGKMSNKEKDEIVEKFL 526

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                +LI+TTVIEVG++V +A+ +II +A  FGLA LHQLRGRVGR    S CIL+   
Sbjct: 527 KKEIHILISTTVIEVGVNVANATFMIIVDAHRFGLATLHQLRGRVGRSNYQSYCILVTD- 585

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             SK+    +  L+N  DGF IAE DLKQR  G+  G KQSG+P F +A       L+ +
Sbjct: 586 --SKSERIDIMCLEN--DGFKIAEFDLKQRGPGDFFGTKQSGVPSFKVADLINDVDLMYL 641

Query: 659 ARKDAKHIL 667
           A+K A  I+
Sbjct: 642 AKKLALKII 650


>gi|313897578|ref|ZP_07831120.1| putative ATP-dependent DNA helicase RecG [Clostridium sp. HGF2]
 gi|312957530|gb|EFR39156.1| putative ATP-dependent DNA helicase RecG [Clostridium sp. HGF2]
          Length = 669

 Score =  352 bits (904), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 217/637 (34%), Positives = 353/637 (55%), Gaps = 23/637 (3%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLND 96
           R  DLL  +P  +     +P+ +   E+RI+     +++    + + ++    +K++L D
Sbjct: 23  RAEDLLTCYPFRYEHLEAKPRDTWEKEDRIIFEAVIVNRARVIRFRGKQSVTRFKVMLED 82

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL- 155
              +++L  F R      + F  G+ IT+ GK     +R+  +      +N + +   L 
Sbjct: 83  EELDVSL--FNRP---WVSAFTMGKVITIIGKYDG-GSRVTALQ-----YNFKPMKEQLG 131

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           I  VY++  G++     + I +A   L   +P+ I K  L+K       +A   IH+P  
Sbjct: 132 IHPVYNVREGITQKELVRYIDKAWQALQNQIPDVIPKPYLEKYRLIPRKQALYFIHHP-- 189

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSP 273
               E    +   L Y+E L  Q+++  ++ +  + + G            +  ++ FS 
Sbjct: 190 -SSMEAVKQSLRHLKYEEFLKFQLSMQALKARDTEMVQGSAKQFSMGDVMDLKHSLSFSL 248

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q   +++ILQD+S    M R++QGDVG GKT+VA   + A V A  QAV MAP  IL
Sbjct: 249 TNDQNRVVEEILQDLSSDKVMYRMVQGDVGCGKTMVAAFGLYACVLAHKQAVFMAPTEIL 308

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH   +K+   +  I V+++  ++  A ++  LER+ H +  I++GTHALFQD ++YY
Sbjct: 309 AKQHLTNLKRLFSDFDITVDVLYSSLKPAQKKDVLERLKHNEIDILVGTHALFQDDVEYY 368

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L +V+ DEQHRFGV QR K+ +K      LLM+ATPIPRTL ++  GD+D+S I E P 
Sbjct: 369 DLGMVVADEQHRFGVAQRKKMLEKGEKVDFLLMSATPIPRTLAISLYGDMDVSTIQELPK 428

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GR  + T +I    +  ++E +   + EG + Y +CP IE+ ++ + R+V E ++ +   
Sbjct: 429 GRSTVTTKLISSRSMSPILEAVLEKIDEGDQCYVVCPAIEKNEDMDMRNVTEIYDGMCAS 488

Query: 514 FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 IA++HG+M+  +K++VM+ F +    +L++TTVIEVG+DV  A+I++I +A  F
Sbjct: 489 LGRRYRIALLHGKMNTQEKDAVMERFLHREVDILVSTTVIEVGVDVKAANIMVIYDAHRF 548

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+Q+HQLRGRVGRG     C LL       +S  RL + + T DGF IA  DL+ R  G
Sbjct: 549 GLSQIHQLRGRVGRGTRPGYCYLLSSTK-DPDSLQRLKICEQTRDGFAIARADLQLRGPG 607

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +ILG +QSG+P F++       ++LE+AR+DA  IL 
Sbjct: 608 DILGTRQSGVPGFILGDVIQDANILEVAREDAAEILA 644


>gi|257124969|ref|YP_003163083.1| ATP-dependent DNA helicase RecG [Leptotrichia buccalis C-1013-b]
 gi|257048908|gb|ACV38092.1| ATP-dependent DNA helicase RecG [Leptotrichia buccalis C-1013-b]
          Length = 689

 Score =  352 bits (904), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 228/615 (37%), Positives = 345/615 (56%), Gaps = 18/615 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEI 101
           DLL++ P ++ +R    KI+EI  +  V + G I    +  ++  R  ++ +L+D +G I
Sbjct: 37  DLLYFFPRAYENRSNHKKIAEILADEFVILQGTIVNVVNQYIKAGRTMFRAVLSDDSGMI 96

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF---PLIEA 158
            L++F      +KN    G +ITV GK++K   +  +V+P Y   N    +      I  
Sbjct: 97  ELVWF--NNRFVKNGIHIGDEITVYGKVRKTV-KFQLVNPEYKKINQASFDMHEQKQILP 153

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           +Y     L   + +K++  AL     +L E + K+ LQK+      EA   IH P     
Sbjct: 154 IYPSTESLRQQVIRKVMENALMDYGYLLQENLPKEFLQKEKLLGRKEAVLNIHFPESE-- 211

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK--IAQKILRNIPFSPTK 275
            E  S AR+R   +E+L  ++ +L  R    K       +E    +  K ++++ +  TK
Sbjct: 212 -EKQSKARKRFMLEEILLLEMGILQNRFSVDKANKNLYKLEDNKSLVSKFIKSLDYELTK 270

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q+  IK+I  ++     + R++QGDVGSGKT+V+ I +   VE   Q VIMAP  ILA 
Sbjct: 271 AQKRVIKEIYSELKAGKIVNRLIQGDVGSGKTIVSFIMLLYMVENNYQGVIMAPTEILAT 330

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY  I     N  I VE++T ++    + K L  I  G   I+IGTH+L +D++ +  L
Sbjct: 331 QHYLGIVDEFMNLDIRVELLTRSVKGKKKEKLLNEIKEGLVDIVIGTHSLIEDNVIFKNL 390

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L+++DEQHRFGV QR  L  K    ++++M+ATPIPR+L LT  GD+D+S I E PAGR
Sbjct: 391 GLIVIDEQHRFGVTQRKLLRDKGNIANLIVMSATPIPRSLALTIYGDLDVSIIDELPAGR 450

Query: 456 KPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            PIKT  I  N ID  ++   ++  + +G++ Y + P IEE +  N +S  E +      
Sbjct: 451 SPIKTKWIQ-NEIDRQKMYNFMEKKMKDGRQVYIVSPLIEESESLNVKSAQETYEEYISI 509

Query: 514 F-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           F    I ++HGR +  +K+ VM+ FKN    +L++TTVIEVG++V +ASI++I +A+ FG
Sbjct: 510 FPNRKIGLMHGRQTYKEKQKVMEQFKNHELDILVSTTVIEVGVNVPNASIMVIRDAQRFG 569

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+ LHQLRGRVGRG+  S C  L     ++ S  RL V++ T DGF IAEEDLK R  GE
Sbjct: 570 LSSLHQLRGRVGRGKYQSYC-FLESETTNEISTKRLEVMEETTDGFKIAEEDLKLRNSGE 628

Query: 633 ILGIKQSGMPKFLIA 647
           ILG +QSG+   L  
Sbjct: 629 ILGTRQSGVSDMLFT 643


>gi|291296567|ref|YP_003507965.1| ATP-dependent DNA helicase RecG [Meiothermus ruber DSM 1279]
 gi|290471526|gb|ADD28945.1| ATP-dependent DNA helicase RecG [Meiothermus ruber DSM 1279]
          Length = 787

 Score =  352 bits (904), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 215/638 (33%), Positives = 347/638 (54%), Gaps = 17/638 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGE 100
           DLL ++P  + DR     I E+ +    T+ G +      +  ++  +  ++   D  G 
Sbjct: 135 DLLHHYPRRYEDRRTLQSIREVEDGAKATVVGKVLSRELVKTPRKGLQLVQVRFMDAWGW 194

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
                ++ +  +LK +  EG  + ++G+++K      ++  ++     + ++   I  VY
Sbjct: 195 KFTGVWFNQPWVLKQMP-EGASLVLSGRVQKRGGVTSLMVEYFEDEGGESLSTGRIVPVY 253

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
               G+     ++    AL     +P+ +E  L Q    P +  A    H P   +  E 
Sbjct: 254 PAKEGIGQAFLRRAAWRALEAFQTIPDPLEPYLKQASLMP-LDRALRQAHFPSSEEQLEQ 312

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
              A +RL +DE L  ++ +++        +G    V  ++ ++    +PF+ T +QE  
Sbjct: 313 ---ALQRLKFDEFLLLELKVMI-ESGGSALLGRVFRVTPEMLERFRAALPFTLTGAQERV 368

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           + +IL DM  + +M R++QGDVGSGKT VA  A+  A + G Q  +MAP  ILA+QH+E 
Sbjct: 369 LSEILADMQSERQMARLVQGDVGSGKTAVAAAALFVAAQNGAQGALMAPTEILAKQHFEN 428

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           + +Y     + V+++ G+M    +R  LER+  GQ  +++GTHAL QD + ++ L L ++
Sbjct: 429 LTRYLYPLGVSVDLLVGSMSNGEKRSVLERLKSGQTQVVVGTHALIQDGVAFHDLGLAVI 488

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+HRFGV QR +L      P VL+M+ATPIPR+L LT  GD+++S+I E P GR P++T
Sbjct: 489 DEEHRFGVMQRRRLL--GQRPDVLVMSATPIPRSLALTLYGDLEVSQIDELPPGRTPVRT 546

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-----T 515
            I+      +     +  + +G + + + P IEE  ES   + +     L E        
Sbjct: 547 KILTQKTRTQAYAFARQEIKKGHQVFVVTPMIEE-GESEATAELAAATRLREELEILLPD 605

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             I ++HG+M   +K++VM+ FK G   LL++TTVIEVG+D+  A+++IIENAE FGLAQ
Sbjct: 606 VRIDLLHGKMKAEEKDAVMERFKQGAFDLLVSTTVIEVGVDIPQATVMIIENAERFGLAQ 665

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S C+L+     SK +  RL V++ + DGF IAE+DL+ R  GE+ G
Sbjct: 666 LHQLRGRVGRGGLESYCVLIAG-ETSKRTLERLRVIEESTDGFYIAEQDLRLRGPGELRG 724

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            +QSGMP   +       +++E +R  AK IL  DP L
Sbjct: 725 TRQSGMPDLRLGDLASDQAIIEQSRALAKAILEADPYL 762


>gi|116495097|ref|YP_806831.1| ATP-dependent DNA helicase RecG [Lactobacillus casei ATCC 334]
 gi|116105247|gb|ABJ70389.1| ATP-dependent DNA helicase RecG [Lactobacillus casei ATCC 334]
 gi|327382643|gb|AEA54119.1| DNA helicase RecG [Lactobacillus casei LC2W]
 gi|327385837|gb|AEA57311.1| DNA helicase RecG [Lactobacillus casei BD-II]
          Length = 718

 Score =  352 bits (904), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 220/675 (32%), Positives = 370/675 (54%), Gaps = 25/675 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P++   GVG K    L+ +      +  R  DLLFY P  + D   +  ++E +
Sbjct: 39  LMALTDPVTVLPGVGPKREAGLASL----GIHTIR--DLLFYFPYRYDDLKVK-DLAEAA 91

Query: 66  EERIVTITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           ++  +T+ G +      S F   + R   + L      I + FF +    LK+ F  G +
Sbjct: 92  DQEKLTVKGIVVTDPVISRFGPHRSR-VNVKLQIERSVILVTFFNQP--WLKDRFQMGDE 148

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR- 181
             + GK      R  +     +   SQD   P + A+Y++   + +     +I  A  R 
Sbjct: 149 AAIFGKWDA--KRRSLTGMKILATQSQDQ--PSMAAIYTVNKNVRMGTLLDLIKAAWERD 204

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              + + +   + +     S A+  + +H P    +      AR    + E    Q+ + 
Sbjct: 205 QQNINDLVPASIREHYRLMSDAQLVHGMHFPDTPAE---AKAARRTGVFREFFLFQLQIQ 261

Query: 242 LMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            +++       G+ I  + +  + ++  +PF+ T +Q+  + +I  DM + N M R+LQG
Sbjct: 262 ALKQLNANSSNGLAIPYDNQALRALIATLPFALTNAQKRVVNEICADMRRPNHMNRLLQG 321

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA I + AAV AG QA +M P  +LA+QH+  + K  ++  + + ++TG+  
Sbjct: 322 DVGSGKTVVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTS 381

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+ L  +  G+ ++IIGTHAL Q  + ++ L LV++DEQHRFGV QR  L +K   
Sbjct: 382 TKKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVIDEQHRFGVNQRKILQEKGQK 441

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P +L MTATPIPRTL +T+ G++D+S I E PAGRKPI T+ +  N+ID+V   ++  + 
Sbjct: 442 PDLLSMTATPIPRTLAITAYGEMDVSTIDELPAGRKPIATMWLRKNQIDQVYRIIREQVQ 501

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538
            G + + I P I E ++ + ++  + F  + +   +   +A++HG+M   +K+ +M +F 
Sbjct: 502 SGSQVFAITPLIAESEKIDLQNAEQLFVDMQKAVGNLGPVALLHGQMKPDEKDQIMRAFS 561

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L++TTV+EVG+D+ +A+++ I +A+ FGL+QLHQLRGRVGRG++ + C+L+  P
Sbjct: 562 DGKIAVLVSTTVVEVGVDIPNATVMAIFDADRFGLSQLHQLRGRVGRGQKAAQCLLIADP 621

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             ++    R+ ++  T DGFL+A++DL+ R  G+I G KQSG+P+F +A P      LE 
Sbjct: 622 K-NEQGIARMEIMTKTNDGFLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEA 680

Query: 659 ARKDAKHILTQDPDL 673
           A+K    I   DP L
Sbjct: 681 AQKIVAQIFKTDPHL 695


>gi|238916890|ref|YP_002930407.1| ATP-dependent DNA helicase RecG [Eubacterium eligens ATCC 27750]
 gi|238872250|gb|ACR71960.1| ATP-dependent DNA helicase RecG [Eubacterium eligens ATCC 27750]
          Length = 685

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 227/648 (35%), Positives = 353/648 (54%), Gaps = 31/648 (4%)

Query: 43  DLLFYHPSSFIDRHYRP----KISEISEERIVTITGYISQHSSFQLQKR-RPYKILLNDG 97
           DL+  +P  + D ++ P     IS  SE   V + G + +        R +   + + D 
Sbjct: 27  DLVGLYPRDY-DVYHEPVFVKDISHESEHTEVAVEGQVCKSPDIYGSGRLKILTVTIKDY 85

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
            G+     +Y     LKN    G +    G++   +  ++     Y     +++   L +
Sbjct: 86  NGDSIKCSWY-NMPFLKNTLRLGARYVFRGRLVNKRGWLLEQPKMYTLAQYKELQGTL-Q 143

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIEKDLLQKKSFPSIAE-AFNI-- 208
            +Y L  GL+ +   K + +AL +         +P++I K         S+AE  F+I  
Sbjct: 144 PIYPLTKGLTNNTVTKAVAQALEKYSAGLEKEYIPDYIRKRY-------SLAEHNFSIVN 196

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
           IH P+  +++     AR RLA++E     +A L ++   +      +  E K   + L +
Sbjct: 197 IHFPKTMEEY---VQARHRLAFEEFFLFTLATLSLKSANEHIPNSYVIPESKEKDQFLES 253

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           + +S T +Q   + ++ QDMS ++   R++QGDVGSGKT+VA IA+   V AG Q  +MA
Sbjct: 254 LSYSLTNAQLRTVSEVAQDMSGEHLCSRLIQGDVGSGKTVVATIALINTVIAGYQGALMA 313

Query: 329 PIGILAQQHYE-FIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           P  +LA+QHYE F+K + +    I VE++ G+M    +++A  RIA G A II+GTHAL 
Sbjct: 314 PTEVLARQHYESFVKGFEKAGLDIRVELLVGSMTAKQKKEAYARIADGTAGIIVGTHALI 373

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           Q+ ++Y +L LVI DEQHRFGV QR   +QK  +PH+L+M+ATPIPRTL +   GD+DIS
Sbjct: 374 QEKVEYKELALVITDEQHRFGVNQRRDFSQKGKSPHILVMSATPIPRTLAIILYGDLDIS 433

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I E PA R PIK  ++  +   +    +   ++ G++ Y ICP +E+ +     +VV+ 
Sbjct: 434 IIDEMPANRLPIKNCVVDESYRPKAYTFIHKQVASGRQCYVICPMVEDSEAVEAENVVDY 493

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              L +      I  +HG+M    K  VM+ F      +L++TTVIEVG++V +++++++
Sbjct: 494 TAMLKKELPDIRIEYLHGKMRPSLKNEVMERFAAHETDVLVSTTVIEVGVNVPNSTVMMV 553

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           EN+E FGLAQLHQLRGRVGRGE  S CI +     S+    RL +L  + DGF IAEEDL
Sbjct: 554 ENSERFGLAQLHQLRGRVGRGEYQSYCIFVTGNK-SEKIRKRLEILNKSNDGFKIAEEDL 612

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           + R  G+  G++QSG   F IA        L+ A   AK +L +DP+L
Sbjct: 613 RLRGPGDFFGVRQSGDFDFGIADVFTDAKTLKEASDAAKDMLKKDPEL 660


>gi|260101410|ref|ZP_05751647.1| DNA helicase RecG [Lactobacillus helveticus DSM 20075]
 gi|260084750|gb|EEW68870.1| DNA helicase RecG [Lactobacillus helveticus DSM 20075]
          Length = 679

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 221/683 (32%), Positives = 370/683 (54%), Gaps = 42/683 (6%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +       + G+       DLLFY P  + +    P + +I +
Sbjct: 7   NALFAPVTDLKGVGTKTA------ADLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 59

Query: 67  ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + V + G+++     S F  +K R  +K+ ++    ++ ++ F+ +   LK+    G +
Sbjct: 60  GQKVVLKGFVATEPFVSRFGYKKSRLSFKMRIDH---DVIMVNFFNQP-WLKSKIEIGEE 115

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV---------YSLPTGLSVDLFKK 173
           + + GK    +  +      +I     D     I  V          SL   L++D+F  
Sbjct: 116 VAIYGKYNVARQSLSAFK--FIAAKENDSGMAPIYPVNRHVKQKKLVSL-INLAIDVFLD 172

Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            + +      ++PE I     +K    +  E    +H+P+ + +    + A+    + E 
Sbjct: 173 QVRD------IVPENIR----EKYRLLTDQEIIQKMHHPKNSTE---ANLAKRSAIFREF 219

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
              ++ L L+     K+ G P N + K   ++  ++PF  +  Q+  + +I  DM    +
Sbjct: 220 FIFELQLALLANHDGKQAGYPKNYDLKEIAQLTSSLPFELSDDQKEVVNEIFADMHSSGQ 279

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA+ A+ AA+ AG Q  +M P  ILA QH++ I +  +   + V 
Sbjct: 280 MRRLLQGDVGSGKTVVAVYAIFAAITAGYQVALMVPTEILATQHFKKIDELLRPLGVRVA 339

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TGN     RR+    +  G  +++IGTHAL Q+++ + KL LVI+DEQHRFGV QR  
Sbjct: 340 LLTGNTKTLERREIYRELMDGTINVMIGTHALIQENVIFKKLGLVIIDEQHRFGVGQRQA 399

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K   P +L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +      ++ +V +
Sbjct: 400 LINKGDQPDILAMTATPIPRTLALTVYGDMTVSEIHHMPAGRKPIISSWKTSTQMKDVYQ 459

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTSSIAIIHGRMSDIDKES 532
           +++  L +G + Y + P I E +  + ++  E    L H+     + ++HG+M    K+ 
Sbjct: 460 KMQDQLDQGFQIYAVTPLITESETLDLKNAEELHAKLSHDFPDQKVVLLHGQMPGPKKDE 519

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M +F +G   +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C
Sbjct: 520 IMIAFASGEINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGKTQSYC 579

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           + +  P  + +   R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F +     +
Sbjct: 580 VFVADPK-TDSGKARMKIIAATNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNN 638

Query: 653 DSLLEIARKDAKHILTQDPDLTS 675
            + L +A+K A+ ++ QDP L  
Sbjct: 639 YNTLVVAQKVARDLVQQDPKLAD 661


>gi|296121173|ref|YP_003628951.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296013513|gb|ADG66752.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 703

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 229/681 (33%), Positives = 358/681 (52%), Gaps = 42/681 (6%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+   R VG + +  L+K+      +     DLL + P   +D     +I  + E    T
Sbjct: 9   PVEFLRTVGPQRAALLAKL------DILTVEDLLLWMPRDVLDLTRTTRIEGLIEGTTQT 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF-----YRKTEMLKNVFFEGRKITVT 126
           + G +    S   + R    ILL    G +  ++F     +RK E   +V        VT
Sbjct: 63  LRGIVVDRDSRISRGRSMVGILLKADGGYLRCVWFNQPYVFRKYEP-DSVLL------VT 115

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP-V 184
           G+ K    R  M HP      S D    P I   Y L  G+S+   +++   A+     +
Sbjct: 116 GQPKLRDGRWEMSHPLVQRLESDDEQAGPGILPRYPLTEGISMHEMRRMTRAAVEECAHL 175

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L + I     Q   +P+ +EA   +H  +  +++E    +R+RL  ++LL  Q+ L L R
Sbjct: 176 LTDPIPASFRQVHQWPARSEACRGLHVAQSLEEYE---RSRKRLLLEDLLEFQLGLALRR 232

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           + + +++  I +  + +I  +I R  PF  T  Q  A+++IL D+ +   M R+LQ DVG
Sbjct: 233 RMRIEQQEAIALPADQRIRARIARLFPFEWTNGQNEALEEILTDLEKTRPMHRLLQADVG 292

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT VA+ AM  AV    QA++MAP  ILA+QH+E +++    +Q+   ++TG++  A 
Sbjct: 293 AGKTAVAIAAMLVAVANRMQAILMAPTEILARQHFETLEELLAESQVERRLLTGSLTAAQ 352

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  I  G A +I+GT +L Q+ +++ K  LV++DEQH+FGV+QR +  Q +T PH+
Sbjct: 353 KRTTLSEIEEGSAQLIVGTQSLIQEGVKFSKPGLVVIDEQHKFGVEQRARFAQGSTIPHM 412

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT-VIIPINRIDEVIERLKVVLSEG 482
           L+MTATPIPRTL LT+ GD+D+S I E P GR+P+ T V+       +  + LK  L+EG
Sbjct: 413 LVMTATPIPRTLCLTAFGDLDLSIIRELPPGRQPVSTHVVTDAPSARKAWDFLKSKLTEG 472

Query: 483 KKAYWICPQIEEKKESNFRS----------VVERFNSLHEHFTSS------IAIIHGRMS 526
           ++AY ICP++E  + S   S            E    L++   S       + ++HGRMS
Sbjct: 473 RQAYVICPKVETTRSSEQASSPQIVQAAPQTWESAEDLYQRLQSKELAQFRVGLLHGRMS 532

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              +   M  F+     +L+AT+VIEVG+DV  A+ +I+ +AE FGL+QLHQ RGRVGRG
Sbjct: 533 PELRAETMRKFREHELDVLVATSVIEVGVDVPSATQMIVYHAEQFGLSQLHQFRGRVGRG 592

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
                C  L+      ++ +RL  L+ T DGF +AE D + R  G++LG +Q G      
Sbjct: 593 SRQGFC-FLFTKSTDPDALSRLKTLEQTNDGFAVAEADFQLRGHGDVLGTRQHGQTPLKR 651

Query: 647 AQPELHDSLLEIARKDAKHIL 667
           A       L+E AR  A  ++
Sbjct: 652 ANLIRDAQLVETARALATSLI 672


>gi|254372315|ref|ZP_04987806.1| hypothetical protein FTCG_01382 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570044|gb|EDN35698.1| hypothetical protein FTCG_01382 [Francisella novicida GA99-3549]
          Length = 648

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 227/639 (35%), Positives = 361/639 (56%), Gaps = 22/639 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
           F GVG+     L+K  N  + N     DLL   P  + D      I+ +   +   I G 
Sbjct: 6   FNGVGEATIKALAKC-NIHDPN-----DLLTIFPKDYKDTRVITPINHLVAGKRSLIQGR 59

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           ++ + +++   ++  +  +ND TG  +++ F      L  +      +   GK++     
Sbjct: 60  VT-NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILERSEYVRCYGKVE-FSLS 116

Query: 136 IIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194
             MVHP +   N+ +        AVY L   +   L  K+I++ L    V    I   LL
Sbjct: 117 PQMVHPEWATVNNGECALKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLL 174

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
           ++ +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K   K    P
Sbjct: 175 RRFNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNIVKAQA-P 233

Query: 255 INVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
                KI Q +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA
Sbjct: 234 QLFLTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIA 293

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
             AAV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R++L++I  
Sbjct: 294 AYAAVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKIKD 353

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMT 427
            +  +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K+++      PH L+++
Sbjct: 354 QKDCVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIIS 413

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +  G++ YW
Sbjct: 414 ATPIPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYW 473

Query: 488 ICPQIEEKKESNF-RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP +EE +  +F + V   +  L E     ++ +++G M   DK   M +FK     +L
Sbjct: 474 VCPLVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVL 533

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+   
Sbjct: 534 VATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGK 593

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
            RLS+++ ++DGF +AE+DL+ R  G+ILG +QSG+  F
Sbjct: 594 RRLSLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTF 632


>gi|256832897|ref|YP_003161624.1| DEAD/DEAH box helicase domain-containing protein [Jonesia
           denitrificans DSM 20603]
 gi|256686428|gb|ACV09321.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
           20603]
          Length = 750

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 242/721 (33%), Positives = 364/721 (50%), Gaps = 85/721 (11%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           +G K +  L+K+        T   DLL++ P  + +      I  ++E   VT+   I  
Sbjct: 26  LGTKTATALTKL------GLTTAQDLLWHTPRRYAEPGRLTNIGALTEGEHVTVMARIHS 79

Query: 79  HSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLK---NVFFEGRKITVTGKIKKLK 133
            S+  ++ R       L+ D T  +TL FF R    L+   +    GR    TG ++  +
Sbjct: 80  TSTRTMRSRSGALLTALVTDDTHTLTLAFFARSAGALRVHESKLQPGRVALFTGTVRDYR 139

Query: 134 NRIIMVHPHYIF--------HNSQDV-NFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-P 183
               + HP YI          ++ DV N P+   +Y    G+     ++ +   L +L P
Sbjct: 140 GERQLTHPDYIIIGIDATTTDDAIDVANRPI--PIYPATAGVPTWRIERAVATVLGQLTP 197

Query: 184 V-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             +P+ +   + ++   P+  EA  +IH P    D +W   AR R+  DE    Q AL+ 
Sbjct: 198 TDVPDPLPATIRERDQLPTAYEALRMIHQPHT--DSDWRR-ARHRMRIDEAFVIQTALIQ 254

Query: 243 MRKQFKKEIGIPI----NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
            R   +    +P     ++ G++A      +P++ T+ Q     DI  D++  + M R+L
Sbjct: 255 RRHTTRT---LPATARPHIAGQLADTFDATLPYTLTQGQRDVGADIATDLASTHPMQRLL 311

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVAL AM   ++  GQAV++AP  +LA QH   +      TQ++  +  G 
Sbjct: 312 QGDVGSGKTLVALRAMLQVIDNHGQAVLLAPTEVLATQHAATL------TQLLGPLANGP 365

Query: 359 MPQA---------------HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
           + +                 R++AL  IA G A IIIGTHA+  D++ Y  L LVIVDEQ
Sbjct: 366 LTKGPATTITLLTGSLTTTQRKRALLDIASGMAGIIIGTHAVLSDNVHYADLGLVIVDEQ 425

Query: 404 HRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           HRFGV QR  L  + T  PH+L+MTATPIPRT+ +T  GD+DIS +T+ PAGR  I T  
Sbjct: 426 HRFGVHQRDTLRTRGTHTPHMLVMTATPIPRTVAMTVFGDLDISTLTDMPAGRAGITTHR 485

Query: 463 IPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKES--------------------- 498
           +P      +  V +R    + +G++ Y +CP+I + +                       
Sbjct: 486 VPAKNPTWMSRVWQRAAEEIHQGRQVYVVCPRINDTEPDPTTEPDLTDPDTLPLDNTPTP 545

Query: 499 -NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               SV      L      +   I ++HG MS  DK++ M +F + T  LL+ATTVIEVG
Sbjct: 546 RTLASVTTTATMLANEPALAGVRIGVLHGGMSGDDKDAAMVNFADHTTPLLVATTVIEVG 605

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           ++V  AS +II +A+ FG++QLHQLRGRVGRG E   C+L+        +  RL+ + +T
Sbjct: 606 VNVPTASTMIILDADRFGISQLHQLRGRVGRGTEPGLCLLVADTQPGTPADDRLNAVAST 665

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDL 673
            DGF +A  DL+ R+EG++LG  QSG    L     + D+ L+  AR+DA  I+T DP L
Sbjct: 666 TDGFDLAARDLELRREGDVLGATQSGRGSSLKFLRVITDADLIATAREDAITIVTADPTL 725

Query: 674 T 674
           T
Sbjct: 726 T 726


>gi|309792329|ref|ZP_07686799.1| ATP-dependent DNA helicase RecG [Oscillochloris trichoides DG6]
 gi|308225644|gb|EFO79402.1| ATP-dependent DNA helicase RecG [Oscillochloris trichoides DG6]
          Length = 855

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 242/738 (32%), Positives = 379/738 (51%), Gaps = 90/738 (12%)

Query: 2   RPSFLNPLFAPLSTFRGVG--KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP 59
           RP  + P  +P +  + V   ++  L   K +           DLL++ P  + D     
Sbjct: 121 RPPLVEPPISPYAELKDVPGMQRKDLLAFKRLKLHTVE-----DLLYHFPHRYEDYSSHK 175

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRPYK--ILLNDGTGEITLLFFYRKTEMLKNVF 117
            I+++      T+ G + +    +L ++ P +  I L D TG I  +FF ++  M     
Sbjct: 176 HIADLIVGSNETVIGTVEE---TRLVEKTPLRVEITLGDETGIIKAVFFNQRWLMWD--L 230

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD---VNFPLIEAVYSLPTGLSVDLFKKI 174
             G +I ++GK+        M  P +  +  +    ++   +  V+ L  GL +D   + 
Sbjct: 231 SVGDQIVLSGKVSVYGGVRQMTSPAWERYRPEPDALIHTGRLVPVHRLTKGL-IDRNARK 289

Query: 175 IVEALSRLPV------LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
           +++ L  + V      LPE   K     K  P + +A + +H P   ++ E    AR RL
Sbjct: 290 MIKYLVDVSVPHLEDHLPEAQRK---AAKVLP-LGQAISQVHFPNTIQEIE---AARTRL 342

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
            +DE L  Q+ ++  +  ++ E+G  +     +  ++L ++PF+ T +Q  A+++I  DM
Sbjct: 343 GFDEFLFIQLGVMQRKLLWQGELGYAMPHVPAVHAELLEHLPFALTGAQTRALEEIFADM 402

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           ++   M R+LQGDVGSGKT+VA  ++   +  G Q  +MAP  ILA+QHY+ +K+     
Sbjct: 403 ARPVPMARLLQGDVGSGKTVVAAASLLQVIANGFQGALMAPTEILAEQHYKGLKRLLSRV 462

Query: 349 QII---------------------------------------------VEIITGNMPQAH 363
           ++                                              V ++TG++    
Sbjct: 463 RVPRQPRPEVEGADWRTRLSSEEAAQLAEIKALLGMSVEDDMDGAGVRVALLTGSLGAKE 522

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ LE IA G+  +I+GTHAL  + +QY+ L L +VDEQHRFGV+QR +L  K   PH+
Sbjct: 523 RRRVLEGIAKGEVDLIVGTHALITEHVQYHSLGLAVVDEQHRFGVEQRQRLRDKGFNPHL 582

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T  GD+D+S + E P GR+ I+T  I     D+    ++  + +G+
Sbjct: 583 LVMTATPIPRTLTMTIYGDLDVSILDELPPGRQTIRTRWISKTDRDKAYRHMRKEIEKGR 642

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS------IAIIHGRMSDIDKESVMDSF 537
           +A+ ICP +EE  + +  S  E    +HE   S       + ++HG+M   +K+ VM +F
Sbjct: 643 QAFVICPLVEESDKIDLPSAEE----MHERLQSEVFPDLRVGLVHGKMLPREKDEVMVAF 698

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +     +L+AT VIEVGID+ +AS I+IE AE FGL+QLHQ RGRVGRGE  S CIL+ H
Sbjct: 699 RERAFDILVATAVIEVGIDIPNASTILIEGAERFGLSQLHQFRGRVGRGEHQSYCILIPH 758

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLL 656
              ++    RL  L  T DGF +AE DL+ R  GE  G +QSG P   IAQ  L D  LL
Sbjct: 759 KE-NETGNKRLDALTETSDGFRLAEIDLELRGPGEFFGTRQSGTPDLKIAQ--LTDVGLL 815

Query: 657 EIARKDAKHILTQDPDLT 674
           + A   A+ IL +DP+L 
Sbjct: 816 KTASNVARAILDEDPELA 833


>gi|254368764|ref|ZP_04984777.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121685|gb|EDO65855.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 679

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 229/641 (35%), Positives = 362/641 (56%), Gaps = 26/641 (4%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
           F GVG+     L+K  N  + N     DLL   P  + D      I+ +   +   I G 
Sbjct: 6   FNGVGEATIKALAKY-NIHDPN-----DLLTIFPKDYKDTRVITPINHLVAGKRSLIQGR 59

Query: 76  ISQHSSFQLQKRRPYKILLNDGTG--EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
           ++ + +++   ++  +  +ND TG   + L  FYR       +  +   +   GK++   
Sbjct: 60  VT-NLTYKKFGKKFLRFNINDNTGFCSVILFKFYRNQLA---ILEKSEYVRCYGKVE-FS 114

Query: 134 NRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192
               MVHP +   N+ +        AVY L   +   L  K+I++ L    V    I   
Sbjct: 115 LSPQMVHPEWATVNNGECTLKHGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQ 172

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
           LL++ +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K   K   
Sbjct: 173 LLRRFNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQA 232

Query: 253 IPINVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            P     KI Q +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA 
Sbjct: 233 -PQLFLTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVAT 291

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           IA  AAV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R++L++I
Sbjct: 292 IAAYAAVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKI 351

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLL 425
              +  +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K+++      PH L+
Sbjct: 352 KDQKDCVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLI 411

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           ++ATPIPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +  G++ 
Sbjct: 412 ISATPIPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQV 471

Query: 486 YWICPQIEEKKESNF-RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           YW+CP +EE +  +F + V   +  L E     ++ +++G M   DK   M +FK     
Sbjct: 472 YWVCPLVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYA 531

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ATTVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+ 
Sbjct: 532 VLVATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEV 591

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
              RLS+++ ++DGF +AE+DL+ R  G+ILG +QSG+  F
Sbjct: 592 GKRRLSLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTF 632


>gi|134102556|ref|YP_001108217.1| ATP-dependent DNA helicase RecG [Saccharopolyspora erythraea NRRL
           2338]
 gi|133915179|emb|CAM05292.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 750

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 230/731 (31%), Positives = 371/731 (50%), Gaps = 82/731 (11%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           A +S  R +G K +  L   ++          DLL ++P  + +R     I+ +  +   
Sbjct: 9   AEMSLERVLGAKTAKALESALDLSTVG-----DLLRHYPRRYAERGELTAIAGLEIDEHA 63

Query: 71  TITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFF---YRKTEMLKNVFFEGRKITV 125
           T+   + + S   ++ RR    +  + DG   +   FF   +R+ E+L      GR+   
Sbjct: 64  TVLAQVERVSKRSMKSRRGTIVEARITDGHRSLICTFFNQAWRERELLP-----GRRGMF 118

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFP--------LIEAVYSLPTGLSVDLFKKIIVE 177
            GK+   +N++ + HP Y     +D +           +  VY    GL      + + +
Sbjct: 119 AGKVTAYRNQLQLAHPEYQLFTGEDEDVSEAAEEFAGALIPVYPSAQGLPSWSIARCVRQ 178

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
            L       + +  +L  +     +  A   IH PR   DF   + A+ERL +DE LA Q
Sbjct: 179 VLDTWDGEDDPLPGELRTRLGLTGLEAALRKIHRPR---DFGEVTAAQERLKWDEALAVQ 235

Query: 238 IALLLMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           +AL  +R +         P   +G +A    + +PF  T  Q    +DI  D++ ++ M 
Sbjct: 236 LALARLRGEAHAHPAPACPRRDDGILA-AFDKRLPFELTGGQREIGEDIAADLAVEHPMN 294

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII---- 351
           R++QG+VGSGKT+VAL AM   V++G QA ++AP  +LA QH   + +      +     
Sbjct: 295 RLVQGEVGSGKTVVALRAMLQVVDSGRQAAMLAPTEVLAAQHARSLAELLGELGMAGELG 354

Query: 352 -------VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                  V ++TG MP A RRKAL   A G+A I++GTHA+ QD + +  L LV+VDEQH
Sbjct: 355 GAEQATRVTLLTGTMPAAQRRKALLEAASGEAGIVVGTHAIIQDRVSFADLGLVVVDEQH 414

Query: 405 RFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           RFGV+QR  L  +     +PHVL+MTATPIPRT+ +T  GD++ S + E P GR PI T 
Sbjct: 415 RFGVEQRDALRARGGDEVSPHVLVMTATPIPRTVAMTVYGDLETSALRELPIGRSPISTN 474

Query: 462 IIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEE-------KKESNFRSVVERFNSL 510
           ++P+    + +D V +R+   ++ G + Y +CP+I +       K++S+  S V+  +  
Sbjct: 475 VVPVAEKPSWLDRVWQRIHEEVAAGHQVYVVCPRIGDDEETEGKKRKSSRSSAVDDSDGA 534

Query: 511 HEH---------------------------FTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            E                             +  + ++HGR+   DK++VM  F  G   
Sbjct: 535 DEPPPEDSGGQRRPPVAVLDVAEQLAAGPLASLRLGVLHGRLPADDKDAVMRGFAAGDID 594

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ATTV+EVG++V +A++++I +A+ FG++QLHQLRGRVGRG     C+L+        
Sbjct: 595 VLVATTVVEVGVNVPNATVMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEAMGGTT 654

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662
           +  RL  + +T DGF +A  DL+ R+EG+ILG  QSG    L     L D  ++  AR++
Sbjct: 655 TRERLEAVASTTDGFELARLDLELRREGDILGAAQSGRKSGLKMLSLLRDEDVIAQARQE 714

Query: 663 AKHILTQDPDL 673
           A+  + +DP+L
Sbjct: 715 AESFVAEDPEL 725


>gi|191638602|ref|YP_001987768.1| ATP-dependent DNA helicase RecG [Lactobacillus casei BL23]
 gi|190712904|emb|CAQ66910.1| ATP-dependent DNA helicase, RecG [Lactobacillus casei BL23]
          Length = 679

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 219/672 (32%), Positives = 369/672 (54%), Gaps = 25/672 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P++   GVG K    L+ +      +  R  DLLFY P  + D   +  ++E +++ 
Sbjct: 3   LTDPVTVLPGVGPKREAGLASL----GIHTIR--DLLFYFPYRYDDLKVK-DLAEAADQE 55

Query: 69  IVTITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
            +T+ G +      S F   + R   + L      I + FF +    LK+ F  G +  +
Sbjct: 56  KLTVKGIVVTDPVISRFGPHRSR-VNVKLQIERSVILVTFFNQP--WLKDRFQMGDEAAI 112

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPV 184
            GK      R  +     +   SQD   P + A+Y++   + +     +I  A  R    
Sbjct: 113 FGKWDA--KRRSLTGMKILATQSQDQ--PSMAAIYTVNKNVRMGTLLDLIKAAWERDQQN 168

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + + +   + +     S A+  + +H P    +      AR    + E    Q+ +  ++
Sbjct: 169 INDLVPASIREHYRLMSDAQLVHGMHFPDTPAE---AKAARRTGVFREFFLFQLQIQALK 225

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +       G+ I  + +  + ++  +PF+ T +Q+  + +I  DM + N M R+LQGDVG
Sbjct: 226 QLNANSSNGLAIPYDNQALRALIATLPFALTNAQKRVVNEICADMRRPNHMNRLLQGDVG 285

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AAV AG QA +M P  +LA+QH+  + K  ++  + + ++TG+     
Sbjct: 286 SGKTVVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTSTKK 345

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  +  G+ ++IIGTHAL Q  + ++ L LV++DEQHRFGV QR  L +K   P +
Sbjct: 346 RRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVIDEQHRFGVNQRKILQEKGQKPDL 405

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRKPI T+ +  N+ID+V   ++  +  G 
Sbjct: 406 LSMTATPIPRTLAITAYGEMDVSTIDELPAGRKPIATMWLRKNQIDQVYRIIREQVQSGS 465

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           + + I P I E ++ + ++  + F  + +   +   +A++HG+M   +K+ +M +F +G 
Sbjct: 466 QVFAITPLIAESEKIDLQNAEQLFVDMQKAVGNLGPVALLHGQMKPDEKDQIMRAFSDGK 525

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTV+EVG+D+ +A+++ I +A+ FGL+QLHQLRGRVGRG++ + C+L+  P  +
Sbjct: 526 IAVLVSTTVVEVGVDIPNATVMAIFDADRFGLSQLHQLRGRVGRGQKAAQCLLIADPK-N 584

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T DGFL+A++DL+ R  G+I G KQSG+P+F +A P      LE A+K
Sbjct: 585 EQGIARMEIMTKTNDGFLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEAAQK 644

Query: 662 DAKHILTQDPDL 673
               I   DP L
Sbjct: 645 IVAQIFKTDPHL 656


>gi|268319221|ref|YP_003292877.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii FI9785]
 gi|262397596|emb|CAX66610.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii FI9785]
          Length = 679

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 221/675 (32%), Positives = 374/675 (55%), Gaps = 30/675 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           LF P++  +GVG K +  L+ + IN          DLLFY P  + D    P + +I + 
Sbjct: 8   LFEPVTELKGVGAKTATALASLGINT-------IYDLLFYFPFRYDDLETIP-LDQIEDG 59

Query: 68  RIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           + V + G +      S F  +K R  +K+ ++    +I ++ F+ +   LK+    G+++
Sbjct: 60  QKVLLKGMVVTDPFVSRFGYRKTRLSFKMKIDH---DIIMVNFFNQP-WLKDKVESGKEV 115

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182
            V GK + ++  +       +    +D  F     +YS+   L  +  +K+I  AL   +
Sbjct: 116 AVYGKYQVVRQAL---SGFKLVAEKKDSGFA---PIYSVNRHLKQNKLQKLIDLALEEAI 169

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E I   + +K    S       +H+P+   +      AR    + E    Q+ L  
Sbjct: 170 NEVGETIPVSIREKYCLLSDRVLVEKMHHPKNGNE---AKIARRSAIFREFFLFQMQLAQ 226

Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +  Q  ++  G+    +    ++++  IPF  +  Q+  + +I  D+  K +M R+LQGD
Sbjct: 227 LLSQRNEDAPGVEKKYDLAAVKELIEEIPFELSDDQKKVVNEIFADLHSKRQMRRLLQGD 286

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA+ A+ AAV AG QA +M P  ILAQQH+  I +  +   + V ++TG+   
Sbjct: 287 VGSGKTVVAVFAIYAAVTAGYQAALMVPTEILAQQHFAKIDELLKPLGVRVALLTGDTKD 346

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +++    +A G  +++IGTHAL Q  + +  L LVI+DEQHRFGV QR  L +K  AP
Sbjct: 347 LEKKEIYHELADGTINVVIGTHALIQKDVHFKDLGLVIIDEQHRFGVNQRNTLIKKGDAP 406

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L MTATPIPRTL LT  GD+ +S+I   P GRKP+ +     +++ EV+  ++  L +
Sbjct: 407 DILAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLREVLGLMRSQLDK 466

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G + Y + P I E ++S+ ++  +    +  +F + ++ ++HG+M    K  +MDSF  G
Sbjct: 467 GFQIYVVTPLISESEKSDLKNAEDLQAKIAHYFKNENVVLLHGQMKGDQKNEIMDSFAAG 526

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ +  P  
Sbjct: 527 KINILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK- 585

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    R++++ +T +GF +AEEDLK R EG++ G  QSG+P+F +       + L  A+
Sbjct: 586 TEIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNALVTAQ 645

Query: 661 KDAKHILTQDPDLTS 675
           K+A++++  DP L +
Sbjct: 646 KEARNLIKSDPALAN 660


>gi|322434362|ref|YP_004216574.1| ATP-dependent DNA helicase RecG [Acidobacterium sp. MP5ACTX9]
 gi|321162089|gb|ADW67794.1| ATP-dependent DNA helicase RecG [Acidobacterium sp. MP5ACTX9]
          Length = 779

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 245/724 (33%), Positives = 368/724 (50%), Gaps = 95/724 (13%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLN----- 95
           DLL++ P  + DR     + ++    + ++ G +    S  L  R P  +++ L      
Sbjct: 33  DLLYHLPFRYEDRLNPKPLDQMKPGEMASLLGDV--RGSTLLTTRGPAIFELTLGLVPLG 90

Query: 96  -DGTG------EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN----RIIMVHPHYI 144
            +G G      + T+   +     L+  F  G+++ V GK++  ++    R  ++ P + 
Sbjct: 91  AEGLGFGGRISQPTIKCLWFNGTYLRERFRLGQQVAVYGKLEASRSGGSGRFKLIQPQFE 150

Query: 145 F-----HNSQDVNFPLIEAVYSLPT----GLSVDLFKKIIVEALSRL--PVLPEWIEKD- 192
                  +  D  F  +E    +P     G +     K+  +   R+   V  E IE   
Sbjct: 151 ILPGPGASGPDAEFAALEMGRIVPVYESLGGTTPWGAKLTSKWTRRVMWSVFEELIESGA 210

Query: 193 ---------LLQKKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIA 239
                    L ++ + P+  EA   IH P      A      +P  +RL ++E    ++ 
Sbjct: 211 EIEETLPAPLRERLALPNRLEALKSIHFPEAGTPVADLMTARTPGHKRLIFEEFFYLELG 270

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L R++ ++ IG       ++   I + +PF PT +Q+  + +I+ DM +   M R+LQ
Sbjct: 271 LELKRRKLRERIGTRFETTDQVRAAIRQVLPFHPTTAQKRVLAEIVGDMKKDQPMRRLLQ 330

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-------TQIIV 352
           GDVGSGKT+VA+ A   A+E G QA +MAP  ILA QHY   +K   +           V
Sbjct: 331 GDVGSGKTIVAMQAALVAIENGFQAALMAPTEILATQHYLSARKLLADKLSPLTGKPYRV 390

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG++    +R++  RI  G+AH+ IGTHAL ++ + +  L LVIVDEQHRFGVQQR 
Sbjct: 391 TLLTGSLDLDRKRESRGRIMRGEAHLAIGTHALIEEKVDFANLGLVIVDEQHRFGVQQRF 450

Query: 413 KLTQKATA------PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           KL +K  A      P VL+MTATPIPRTL LT  GD+D+S I E P GR PI T      
Sbjct: 451 KLMKKPNAEGVMADPDVLVMTATPIPRTLALTIYGDMDVSVIDELPPGRTPIVTRRTSEA 510

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIE-----------------------------EKKE 497
              +V E ++  ++ G +AY + P IE                             +K E
Sbjct: 511 SSAKVWEFVRKQVALGHQAYIVYPIIEGANDDQPELDFAPEPSAQDEPTPTKGKRGKKTE 570

Query: 498 SNF-----RSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           S F     RS  + F+ L         + ++HGRMS  DKE  M  F+ G   +LIATTV
Sbjct: 571 SLFPKAKLRSATQSFDELRAGPLQGLRVGLLHGRMSADDKEVAMRRFQRGETDVLIATTV 630

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           IEVG+DV +AS+++I++AE FGLAQ+HQLRGRVGRG   S CIL+    +S+++  RL  
Sbjct: 631 IEVGVDVPNASVMVIDHAERFGLAQMHQLRGRVGRGAAKSYCILMTGDKVSESAELRLDA 690

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           + +T++GF +AE DL QR  GE  G +Q+GMP+F +A       +LEIA+ +A     Q 
Sbjct: 691 MVHTQNGFELAELDLAQRGPGEFFGTRQAGMPEFRVADLGRDREVLEIAKSEAAR-FAQS 749

Query: 671 PDLT 674
           PD T
Sbjct: 750 PDPT 753


>gi|260890455|ref|ZP_05901718.1| ATP-dependent DNA helicase RecG [Leptotrichia hofstadii F0254]
 gi|260859697|gb|EEX74197.1| ATP-dependent DNA helicase RecG [Leptotrichia hofstadii F0254]
          Length = 689

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 227/617 (36%), Positives = 345/617 (55%), Gaps = 22/617 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEI 101
           DLL++ P ++ +R    KI+EI  +  V + G +    +  ++  R  ++ +L+D +G I
Sbjct: 37  DLLYFFPRAYENRSNHKKIAEILADEFVILQGTVVNVVNQYIKAGRTMFRAVLSDDSGMI 96

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA--- 158
            L++F  +   +KN    G +I V GK++K   +  +V+P Y        +F + E    
Sbjct: 97  ELVWFNNR--FVKNGIHIGDEIAVYGKVRKTV-KFQLVNPEY--KKISQASFDMQEQKQI 151

Query: 159 --VYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
             +Y     L     +K++  AL     +L E + K+ LQK+      EA   IH P   
Sbjct: 152 LPIYPSTESLRQQAIRKVMENALMDYGYLLQENLPKEFLQKEKLLGRKEAVLNIHFPENE 211

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK--IAQKILRNIPFSP 273
              E  S AR+R   +E+L  ++ +L  R    K       +E    +  K ++ + +  
Sbjct: 212 ---EKQSKARKRFMLEEILLLEMGILQNRFSVDKANKNIYKLEDNKSLVSKFIKGLDYDL 268

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           TK+Q+  IK+I  ++     + R++QGDVGSGKT+V+ I +   VE   Q VIMAP  IL
Sbjct: 269 TKAQKRVIKEIYSELKAGKIVNRLIQGDVGSGKTIVSFIMLLYMVENNYQGVIMAPTEIL 328

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A QHY  I     N  I VE++TG++    + K L  I  G   I+IGTH+L +D++ + 
Sbjct: 329 ATQHYLGIVDEFMNLDIRVELLTGSVKGKKKEKLLNEIKEGLVDIVIGTHSLIEDNVIFK 388

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DEQHRFGV QR  L  K    ++++M+ATPIPR+L LT  GD+D+S I E PA
Sbjct: 389 NLGLIVIDEQHRFGVTQRKLLRDKGNLANLIVMSATPIPRSLALTIYGDLDVSIIDELPA 448

Query: 454 GRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           GR PIKT  I  N ID  ++   ++  + +G++ Y + P IEE +  N +S  E +    
Sbjct: 449 GRSPIKTKWIQ-NEIDRQKMYNFMEKKMKDGRQVYIVSPLIEESESLNVKSAQETYEEYI 507

Query: 512 EHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             F    I ++HGR +  +K+ VM+ FKN    +L++TTVIEVG++V +ASI++I +A+ 
Sbjct: 508 SIFPNRKIGLMHGRQTYKEKQKVMEQFKNHELDILVSTTVIEVGVNVPNASIMVIRDAQR 567

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FGL+ LHQLRGRVGRG+  S C  L     ++ S  RL V++ T DGF IAEEDLK R  
Sbjct: 568 FGLSSLHQLRGRVGRGKYQSYC-FLESETTNEISVKRLEVMEETTDGFKIAEEDLKLRNS 626

Query: 631 GEILGIKQSGMPKFLIA 647
           GEILG +QSG+   L  
Sbjct: 627 GEILGTRQSGVSDMLFT 643


>gi|282600913|ref|ZP_05980107.2| ATP-dependent DNA helicase RecG [Subdoligranulum variabile DSM
           15176]
 gi|282570824|gb|EFB76359.1| ATP-dependent DNA helicase RecG [Subdoligranulum variabile DSM
           15176]
          Length = 694

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 226/642 (35%), Positives = 345/642 (53%), Gaps = 25/642 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK--RRPYKILLNDGTGE 100
           DLL  +P  +ID      ++    +    +   + Q    +  K  R   + L  D +G 
Sbjct: 46  DLLLCYPRKYIDYTQPYTVASAPYDVDCCVKATVLQKEPARRIKGGRVLSRALAADDSGV 105

Query: 101 ITLLFF---YRKTEML--KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL 155
           + L +F   Y   +++  +  +FEGR   V G +   +    ++HP  +   +Q    P 
Sbjct: 106 LALSWFNASYAADKLIVGQTYYFEGR---VGGTLTHRE----LLHP-LVRTEAQVAASPF 157

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
           +  VY    GL           AL+ +  L + +  +LL +   P+ A+A   +H PR  
Sbjct: 158 VP-VYHGTEGLPASRQASCAQAALAYVEELQDPLPPELLIRYRMPTKAQAVRAVHAPRNQ 216

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
            D    +  R RL ++EL   QI + L+R   +++   P+            ++P+ PT 
Sbjct: 217 ADL---AAGRRRLIFEELYLLQIGIFLLRSHGRRQTSAPMRP--MKLDPFWGSLPYQPTG 271

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q  A ++IL D+     M R+LQGDVGSGKTLVA  A+  A + G Q+ ++AP  ILA+
Sbjct: 272 AQRRATEEILHDLCADVPMNRLLQGDVGSGKTLVAAAAIWFAAQNGWQSAMLAPTEILAR 331

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QH   +    +   I V ++ G M  + +R AL  IA G+A +++GTHA+  DS+ +  L
Sbjct: 332 QHAATLADRLEPFGINVTLLVGGMKASEKRIALSAIADGRAGLVVGTHAVLTDSVVFKNL 391

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L IVDEQHRFGV+QR  L  KA +PH+L+M+ATPIPRTL L   GD+DIS + E P GR
Sbjct: 392 GLAIVDEQHRFGVRQRGLLAGKAQSPHLLVMSATPIPRTLGLLMYGDLDISVLDELPPGR 451

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-ESNFRSVVERFNSLHEHF 514
           KPIKT  I   +  ++   L   +  G + Y +CP IEE + ++  ++V + +  +    
Sbjct: 452 KPIKTWFINGKKRRDMYGFLDKQIEAGHQVYIVCPAIEENELDTGMQAVNKYYTEVACAM 511

Query: 515 TS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                I ++HG+M   +K+ VM  FK G   +L++TTVIEVG+DV +A+ ++IENAE FG
Sbjct: 512 LPHRRIGLLHGKMKPKEKDEVMQQFKAGELDVLVSTTVIEVGVDVPNATAMVIENAERFG 571

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+ LHQLRGRVGRG   S CIL+     + +   RL  L +T DGF +A+ DL+ R  G+
Sbjct: 572 LSALHQLRGRVGRGAADSCCILISDNE-NDSVRERLRFLCHTSDGFAVAKYDLETRGPGD 630

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
             G  Q G+P   +A        L +A+ +AK +L  DP+LT
Sbjct: 631 FFGQAQHGLPTLRVADLVQDTRTLRVAQDEAKALLAADPNLT 672


>gi|118496945|ref|YP_897995.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           novicida U112]
 gi|194324173|ref|ZP_03057947.1| type III restriction enzyme, res subunit family [Francisella
           tularensis subsp. novicida FTE]
 gi|118422851|gb|ABK89241.1| ATP-dependent DNA helicase [Francisella novicida U112]
 gi|194321620|gb|EDX19104.1| type III restriction enzyme, res subunit family [Francisella
           tularensis subsp. novicida FTE]
          Length = 679

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 224/638 (35%), Positives = 360/638 (56%), Gaps = 20/638 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
           F GVG+     L+K  N  + N     DLL   P  + D      I+ +   +   I G 
Sbjct: 6   FNGVGEATIKALAKY-NIHDPN-----DLLTIFPKDYKDTRVITPINHLVAGKRSLIQGR 59

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           ++ + +++   ++  +  +ND TG  +++ F      L  +  +   +   GK++     
Sbjct: 60  VT-NLTYKKFGKKFLRFNINDSTGFCSVILFKFYPNQLA-ILEKSEYVRCYGKVE-FSLS 116

Query: 136 IIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194
             MVHP +   N+ +        AVY L   +   L  K+I++ L    V    I   LL
Sbjct: 117 PQMVHPEWATVNNGECALKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLL 174

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
           ++ +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K   K     
Sbjct: 175 RRFNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQAPQ 234

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           I +      +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA 
Sbjct: 235 IFLTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIAA 294

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
            AAV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R++L++I   
Sbjct: 295 YAAVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKIKDQ 354

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMTA 428
           +  +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K+++      PH L+++A
Sbjct: 355 KDCVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIISA 414

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +  G++ YW+
Sbjct: 415 TPIPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYWV 474

Query: 489 CPQIEEKKESNF-RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP +EE +  +F + V   +  L E     ++ +++G M   DK   M +FK     +L+
Sbjct: 475 CPLVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVLV 534

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+    
Sbjct: 535 ATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGKR 594

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RLS+++ ++DGF +AE+DL+ R  G+ILG +QSG+  F
Sbjct: 595 RLSLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTF 632


>gi|326330642|ref|ZP_08196946.1| ATP-dependent DNA helicase RecG [Nocardioidaceae bacterium Broad-1]
 gi|325951483|gb|EGD43519.1| ATP-dependent DNA helicase RecG [Nocardioidaceae bacterium Broad-1]
          Length = 754

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 239/711 (33%), Positives = 374/711 (52%), Gaps = 88/711 (12%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR----PYKI--LLND 96
           DLL++ P  ++      +  ++ E  ++T+ G + +    Q   RR     Y++   L  
Sbjct: 33  DLLYHFPRRYLRTADLSQTPQLHEGEMLTVLGEVVRSVVRQHTDRRTGRPAYRVETQLKA 92

Query: 97  GTGEITLLFFY---RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           GT ++ L FF    R  E  + V   G +    GK    +    + +P  +       + 
Sbjct: 93  GTADLQLTFFSKSQRIAEWRRGVLAPGVRGVFVGKAGSFRGEWQLANPQMVVFGDPSDSE 152

Query: 154 PLIEA---------------VYSLPTGLS-VDL-----FKKIIVEALSRLPVLPEWIEKD 192
              EA               +Y L  GL   D+     F + +VE ++   VLPE     
Sbjct: 153 NAAEAADNQMAVEELTELFPIYPLTAGLQHWDVMRAVRFARQVVEDVT--DVLPE----Q 206

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
           L +    P + +A ++IH P + KD +    A+ R  ++E L  Q+ L   R+  +  +G
Sbjct: 207 LRETYDVPGLRDALDLIHAPHELKDVQR---AQHRFRFEEALGLQLVLGRRRRALQA-LG 262

Query: 253 IPINVEG--KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
                 G   + +     +PF+ TK QE+  +++   ++Q + M R+LQG+VGSGKTLVA
Sbjct: 263 TTARTGGVHHLLEAFDARLPFTLTKGQETIGEELETALAQPHPMNRLLQGEVGSGKTLVA 322

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN---------------TQIIVEII 355
           L AM   V++GGQA ++AP  +LAQQH+  I     +                Q  VE++
Sbjct: 323 LRAMLRVVDSGGQAALLAPTEVLAQQHHRSITAMLGDLAASGLAGGLFAGDQEQTHVELL 382

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG+M +  R+  L RIA G+A I++GTHAL QD + +  L LV+VDEQHRFGV+QR  LT
Sbjct: 383 TGSMTKTQRKGPLSRIATGEAGIVVGTHALLQDQVMFDDLGLVVVDEQHRFGVEQRAALT 442

Query: 416 QKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDE 470
            KA T PH+L+MTATPIPRT+ +T  GD+++S +TE PAGR  I+T ++ +      I  
Sbjct: 443 DKAGTPPHLLVMTATPIPRTVAMTVFGDLEVSTLTELPAGRAEIQTNLVSLVDHPAWIAR 502

Query: 471 VIERLKVVLSEGKKAYWICPQIE----EKKESNFRSV-------------VERFNSLHEH 513
           V ER+K  + +G + Y + P+I     E+ ES+ R               +   + + E 
Sbjct: 503 VWERVKEEVEKGHQVYVVAPRISGDESEQGESDQRDFDADGNEVASAKGQLSAVDEVTEE 562

Query: 514 FTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            T+      ++A +HG++   +KE  M +F  G   +LIATTVIEVG+DV +A+ ++I +
Sbjct: 563 LTNGPLRGLNVAKLHGKLPAEEKERTMSAFAAGDIDVLIATTVIEVGVDVPNATTMVILD 622

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           A+ FG++QLHQLRGRVGRG     C+L+ H      + TRL  +  T DGF ++  DL Q
Sbjct: 623 ADRFGVSQLHQLRGRVGRGGLHGLCLLVSHAEAGTPARTRLDAVAETTDGFALSRVDLDQ 682

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHD--SLLEIARKDAKHILTQDPDLTSV 676
           R+EG++LG  QSG    L +   L D  ++L+ AR+ A+ +L +D +L + 
Sbjct: 683 RREGDVLGASQSGRRSSLESLRVLRDEETILQ-AREAAESLLEKDVELATA 732


>gi|208780398|ref|ZP_03247739.1| type III restriction enzyme, res subunit family [Francisella
           novicida FTG]
 gi|208743766|gb|EDZ90069.1| type III restriction enzyme, res subunit family [Francisella
           novicida FTG]
          Length = 679

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 227/639 (35%), Positives = 361/639 (56%), Gaps = 22/639 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
           F GVG+     L+K  N  + N     DLL   P  + D      I+ +   +   I G 
Sbjct: 6   FNGVGEATIKALAKC-NIHDPN-----DLLTIFPKDYKDTRVITPINHLVAGKRSLIQGR 59

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           ++ + +++   ++  +  +ND TG  +++ F      L  +      +   GK++     
Sbjct: 60  VT-NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILERSEYVRCYGKVE-FSLS 116

Query: 136 IIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194
             MVHP +   N+ +        AVY L   +   L  K+I++ L    V    I   LL
Sbjct: 117 PQMVHPEWATVNNGECALKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLL 174

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
           ++ +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K   K    P
Sbjct: 175 RRFNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQA-P 233

Query: 255 INVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
                KI Q +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA
Sbjct: 234 QLFLTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIA 293

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
             AAV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R++L++I  
Sbjct: 294 AYAAVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKIKD 353

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMT 427
            +  +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K+++      PH L+++
Sbjct: 354 QKDCVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIIS 413

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +  G++ YW
Sbjct: 414 ATPIPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYW 473

Query: 488 ICPQIEEKKESNF-RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP +EE +  +F + V   +  L E     ++ +++G M   DK   M +FK     +L
Sbjct: 474 VCPLVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVL 533

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+   
Sbjct: 534 VATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGK 593

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
            RLS+++ ++DGF +AE+DL+ R  G+ILG +QSG+  F
Sbjct: 594 RRLSLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTF 632


>gi|134301433|ref|YP_001121401.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049210|gb|ABO46281.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 679

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 227/639 (35%), Positives = 362/639 (56%), Gaps = 22/639 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
           F GVG+     L+K  N  + N     DLL   P  + D      I+ +   +   I G 
Sbjct: 6   FNGVGEATIKALAKY-NIHDPN-----DLLTIFPKDYKDTRVITPINHLVAGKRSLIQGR 59

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           ++ + +++   ++  +  +ND TG  +++ F      L  +  +   +   GK++     
Sbjct: 60  VT-NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILEKSEYVRCYGKVE-FSLS 116

Query: 136 IIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194
             MVHP +   N+ +        AVY L   +   L  K+I++ L    V    I   LL
Sbjct: 117 PQMVHPEWATVNNGECALKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLL 174

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
           ++ +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K   K    P
Sbjct: 175 RRFNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQA-P 233

Query: 255 INVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
                KI Q +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA
Sbjct: 234 QLFLTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIA 293

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
             AAV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R++L+RI  
Sbjct: 294 AYAAVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDRIKD 353

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMT 427
            +  +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K+++      PH L+++
Sbjct: 354 QKDCVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIIS 413

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +  G++ YW
Sbjct: 414 ATPIPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYW 473

Query: 488 ICPQIEEKKESNFRSVVER-FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP +EE +  +F   V+  +  L E     ++ +++G M   DK   M +FK     +L
Sbjct: 474 VCPLVEESENMDFLQAVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVL 533

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+   
Sbjct: 534 VATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGK 593

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
            RLS+++ ++DGF +AE+DL+ R  G+I+G +QSG+  F
Sbjct: 594 RRLSLVRESQDGFYLAEKDLEIRGAGDIIGKEQSGVSTF 632


>gi|116330156|ref|YP_799874.1| ATP-dependent DNA helicase, recG-related [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116123845|gb|ABJ75116.1| ATP-dependent DNA helicase, recG-related [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 724

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 230/706 (32%), Positives = 379/706 (53%), Gaps = 58/706 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P++  +GVG   +  L+ I            DLL + P  ++DR     +   + 
Sbjct: 15  NELLLPVTVIKGVGSSKAAALASI------GIHTLQDLLNFFPRRYLDRSLTDNVLLKTG 68

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           E +  I   +  + +   + R  + +       E   + F+R     + +F  G  + VT
Sbjct: 69  ETVTLIVEVVDAYLAHGKKSR--FVVGAKTKNNERISIVFFRGVVFFQKIFQPGTTLVVT 126

Query: 127 GKIKKLKNRIIMVHPHY-IFHN----SQDVN---------------------------FP 154
           G+++  +    ++HP Y I  N    S  +N                            P
Sbjct: 127 GRLEYFRG-FQLIHPDYEILANAIKPSYTINSTNLDKKSRQQEPELAELPEMIHAGRIIP 185

Query: 155 LIEAVYSLPT-GLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
           L  +   L + GL    F+KI+  AL RL   + E +  +++++++     E++  IH P
Sbjct: 186 LYSSGEVLKSQGLDSRGFRKILYLALERLKGGISEILPNEIVKRRNLIPREESYREIHFP 245

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE----IGIPINVEGKIAQKILRN 268
               D      A+ RL Y+EL      LL+  K+ ++E    +  P+  + + A  + +N
Sbjct: 246 ---TDEVSLDAAKYRLKYEELFY--FNLLIEHKKREREKIKRVLWPLP-KSETADSVRKN 299

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           + F  T+ Q SA++ I +   +   +  +LQGDVGSGKTLV+L+     ++   Q  ++A
Sbjct: 300 LLFQLTEDQSSALRKIEELTKRDQPIAVLLQGDVGSGKTLVSLLTALRYMDNQIQVCMVA 359

Query: 329 PIGILAQQHYEFIKKYTQNTQII-VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P  ILA+QHY+ I  +  N   + +E++ G  P+ +R + L RI  G    +IGTH++FQ
Sbjct: 360 PTEILARQHYQTILSFLGNMPFLGIELLVGKEPKKNRYEKLYRIKKGDTLFVIGTHSVFQ 419

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + + + +L LVI+DEQH+FGV QR  L  K   P +L MTATPIPRTL LT  GD+D+  
Sbjct: 420 EDVLFSELGLVIIDEQHKFGVDQRETLRSKGKNPDILAMTATPIPRTLCLTLYGDLDLLT 479

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I  KP GR PI+T     NR + V + ++  +S G++ Y + P +EE ++ + +S +  +
Sbjct: 480 IKSKPKGRMPIQTKWFQENRREGVYKSIRKYVSSGRQCYIVYPLVEESEKVDLKSCIAAY 539

Query: 508 NSL-HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             L HE F+  ++ ++HG+M   +K+ VM  F     ++L++TTVIEVGIDV +A++++I
Sbjct: 540 EHLKHEIFSDFAVGLVHGKMETEEKDRVMQEFSKNRIQILVSTTVIEVGIDVPNATVMMI 599

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           E+A+ FG++QLHQLRGRVGRG+E S CIL+    +++++  RL  + N  DGF ++E DL
Sbjct: 600 EHADRFGISQLHQLRGRVGRGDEESFCILMTDSKVTEDAKVRLDAMVNFSDGFALSEIDL 659

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           + R  GE++G++QSG+P F IA       L+E+ R+DA  IL  +P
Sbjct: 660 QLRGPGELMGVRQSGLPDFRIADLRKDSKLIELTREDA--ILFGNP 703


>gi|257462680|ref|ZP_05627089.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D12]
 gi|317060328|ref|ZP_07924813.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D12]
 gi|313686004|gb|EFS22839.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D12]
          Length = 680

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 217/606 (35%), Positives = 343/606 (56%), Gaps = 15/606 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEI-SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           DLL+  P ++ +R     I+E+  EE  V     +  +++     +R  K   +DG+G I
Sbjct: 30  DLLYSFPRAYDNRSNLKTIAELHQEEYAVLHAKLLHVYTTPTRSGKRMTKATASDGSGLI 89

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            +L+F      L+       +    G +K+      M +P +     Q +   ++  +YS
Sbjct: 90  EILWF--GMPYLQKSLKLQEEYIFIGTVKRSMGTFQMTNPEFKLSKGQKMQGEIL-PIYS 146

Query: 162 LPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
               LS + F+K + E LS     L E I ++L QK       +A   IH P   K  E 
Sbjct: 147 THKNLSQNRFRKYMREVLSLTESSLAENIPEELCQKYKILERKQALWEIHFPSSEKTLE- 205

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI---NVEGKIAQKILRNIPFSPTKSQ 277
              A+ R A +ELL  ++ +L  R      +  P+     E  + ++ L ++PF  T++Q
Sbjct: 206 --EAKRRFAIEELLIIEMGILKNRF-LTDSLASPLYHLKGEKTLVRQYLDSLPFPLTRAQ 262

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +  I +I +D+ Q   + R++QGDVGSGKT+VA+I +   +E G Q   MAP  ILA QH
Sbjct: 263 KKVITEIYKDLEQGRIVNRLVQGDVGSGKTIVAMILLLYMIENGYQGAFMAPTEILATQH 322

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y  +    +   + VE++TG++    R + L  +  G+  ++IGTHAL ++ + +++L  
Sbjct: 323 YLGVSSKMKELGLRVELLTGSIRGKKRNELLTALGEGKIDLLIGTHALLEEEVSFHQLGF 382

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +++DEQHRFGV QR KL +K    ++L+MTATPIPR+L L+  GD+D+S + E P GR P
Sbjct: 383 IVIDEQHRFGVLQRQKLREKGILTNLLVMTATPIPRSLALSIYGDLDVSILDELPPGRSP 442

Query: 458 IKTVIIPI-NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           IKT  I     ++++   ++  L +G++AY++ P IEE  +    S++E    + E  + 
Sbjct: 443 IKTKWIASEEEMEKMYSFIRKQLQQGRQAYFVAPLIEESDKLVLHSILEVEKKIREKLSD 502

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            +I+I+HGRM   +KE +M  F+     +L++TTVIEVGIDV +A I+ I NAE FGL+ 
Sbjct: 503 YNISILHGRMKSAEKEEIMRQFQQKEIDILVSTTVIEVGIDVPNAVIMTILNAERFGLSA 562

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S C L+     +++S  RL +++ T+DGF+IAEEDLK R  GEI G
Sbjct: 563 LHQLRGRVGRGNSASFCFLISKTQ-NESSKQRLKIMEATQDGFVIAEEDLKMRNAGEIFG 621

Query: 636 IKQSGM 641
           ++QSG+
Sbjct: 622 LRQSGL 627


>gi|89255931|ref|YP_513293.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314413|ref|YP_763136.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501920|ref|YP_001427985.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167009166|ref|ZP_02274097.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367289|ref|ZP_04983316.1| ATP-dependent DNA helicase recG [Francisella tularensis subsp.
           holarctica 257]
 gi|290953712|ref|ZP_06558333.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312947|ref|ZP_06803666.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89143762|emb|CAJ78964.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129312|gb|ABI82499.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253106|gb|EBA52200.1| ATP-dependent DNA helicase recG [Francisella tularensis subsp.
           holarctica 257]
 gi|156252523|gb|ABU61029.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 679

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 227/639 (35%), Positives = 362/639 (56%), Gaps = 22/639 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
           F GVG+     L+K  N  + N     DLL   P  + D      I+ +   +   I G 
Sbjct: 6   FNGVGEATIKALAKY-NIHDPN-----DLLTIFPKDYKDTRVITPINHLVAGKRSLIQGR 59

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           ++ + +++   ++  +  +ND TG  +++ F      L  +  +   +   GK++     
Sbjct: 60  VT-NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILEKSEYVRCYGKVE-FSLS 116

Query: 136 IIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194
             MVHP +   N+ +        AVY L   +   L  K+I++ L    V    I   LL
Sbjct: 117 PQMVHPEWATVNNGECTLKHGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLL 174

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
           ++ +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K   K    P
Sbjct: 175 RRFNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQA-P 233

Query: 255 INVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
                KI Q +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA
Sbjct: 234 QLFLTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIA 293

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
             AAV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R++L++I  
Sbjct: 294 AYAAVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKIKD 353

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMT 427
            +  +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K+++      PH L+++
Sbjct: 354 QKDCVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIIS 413

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +  G++ YW
Sbjct: 414 ATPIPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYW 473

Query: 488 ICPQIEEKKESNF-RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP +EE +  +F + V   +  L E     ++ +++G M   DK   M +FK     +L
Sbjct: 474 VCPLVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVL 533

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+   
Sbjct: 534 VATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGK 593

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
            RLS+++ ++DGF +AE+DL+ R  G+ILG +QSG+  F
Sbjct: 594 RRLSLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTF 632


>gi|163840526|ref|YP_001624931.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162954002|gb|ABY23517.1| RecG [Renibacterium salmoninarum ATCC 33209]
          Length = 733

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 230/707 (32%), Positives = 369/707 (52%), Gaps = 65/707 (9%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY---KILLND--- 96
           DLL Y P  +++R    +IS +  +  VT+   +   +S ++++R+      ++  D   
Sbjct: 33  DLLNYFPRRYLNRGELTQISSLPFDEEVTLIARVVSTNSRRMRQRKGTITDVVVTGDTST 92

Query: 97  GTGEITLLFF--YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-- 152
           G G + + FF  +R    L      G +   +GK+      + + +P Y+  ++   +  
Sbjct: 93  GAGSLKISFFNGWRAEREL----LPGARAMFSGKVGFFNRALTLTNPDYVLIDADGADEE 148

Query: 153 -----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207
                 P+  A   LP+    +    ++ +A+  L    + + ++  Q++ F  + EA+ 
Sbjct: 149 LARQPIPIYPATAKLPSWKIANAISALL-DAID-LSSFDDPVPEETAQREEFLPLPEAYR 206

Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ--FKKEIGIPINVEGKIAQKI 265
           +IH P +   ++    AR+R  Y E L  Q AL   R Q   ++    P +  G +A   
Sbjct: 207 MIHRPTEPTQWKL---ARDRFRYQEALVLQTALARRRAQSAAQQTQSRPGSSTGLLA-SF 262

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
             ++PF+ T  Q    +++  +++  + M R+LQG+VGSGKTLVAL AM   +++GGQA 
Sbjct: 263 DASLPFTLTNGQREIGEELSAELAGNSPMHRLLQGEVGSGKTLVALRAMLQVIDSGGQAA 322

Query: 326 IMAPIGILAQQHYEFIKK-----------YTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++AP  +LA QH++ I+               +      ++TG MP A ++KAL   A G
Sbjct: 323 LLAPTEVLAAQHFQSIRATLGPLAEGGMLGGFDGGTQAALLTGTMPAAVKKKALLDAASG 382

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPR 433
           QA I+IGTHAL  D +Q++ L L++VDEQHRFGV+QR  L  KA   PH+L+MTATPIPR
Sbjct: 383 QAGIVIGTHALLSDQVQFFDLGLIVVDEQHRFGVEQRDALRLKAIHPPHLLVMTATPIPR 442

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWIC 489
           T+ +T  GD++ S + E PAGR PI T ++ +         + +R +  +  G + Y +C
Sbjct: 443 TVAMTVFGDLETSVLRELPAGRAPISTFVVGLAENPAWFSRLWQRSREEIDAGHQVYVVC 502

Query: 490 PQIEE---------------------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
           P+I E                     K  ++   VVE   S        I  +HGR+   
Sbjct: 503 PRIGEAEGAEPPSGDEPDRLPSEDDAKAMASVLEVVEELRSEPSLAGCRIEALHGRLDPT 562

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            K  VM  F  G  ++L++TTV+EVG+DV +A+++II +A+ FG++QLHQLRGRVGRG  
Sbjct: 563 QKSQVMADFAAGGVQVLVSTTVVEVGVDVHNATLMIILDADRFGISQLHQLRGRVGRGGL 622

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IA 647
             + +L+        S  RL  +  T DGF +++EDLK R+EG+ILG  QSG    L + 
Sbjct: 623 PGTALLVTELAPEHPSRRRLDAVAATTDGFALSQEDLKLRREGDILGASQSGGRSTLRLL 682

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           +   H+S++E+AR DA  I+  DP+L+        I   L    EAF
Sbjct: 683 RVLEHESVIELARSDANKIIADDPELSKHSALEAAIEASLNPEREAF 729


>gi|56708621|ref|YP_170517.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110671092|ref|YP_667649.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457814|ref|ZP_03666287.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371254|ref|ZP_04987256.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875485|ref|ZP_05248195.1| recG, ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56605113|emb|CAG46234.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321425|emb|CAL09617.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569494|gb|EDN35148.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841484|gb|EET19920.1| recG, ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159858|gb|ADA79249.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 679

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 227/639 (35%), Positives = 362/639 (56%), Gaps = 22/639 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
           F GVG+     L+K  N  + N     DLL   P  + D      I+ +   +   I G 
Sbjct: 6   FNGVGEATIKALAKY-NIHDPN-----DLLTIFPKDYKDTRVITPINHLVAGKRSLIQGR 59

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           ++ + +++   ++  +  +ND TG  +++ F      L  +  +   +   GK++     
Sbjct: 60  VT-NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILEKSEYVRCYGKVE-FSLS 116

Query: 136 IIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194
             MVHP +   N+ +        AVY L   +   L  K+I++ L    V    I   LL
Sbjct: 117 PQMVHPEWATVNNGECALKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLL 174

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
           ++ +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K   K    P
Sbjct: 175 RRFNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQA-P 233

Query: 255 INVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
                KI Q +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA
Sbjct: 234 QLFLTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIA 293

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
             AAV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R++L+RI  
Sbjct: 294 AYAAVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDRIKD 353

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMT 427
            +  +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K+++      PH L+++
Sbjct: 354 QKDCVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIIS 413

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +  G++ YW
Sbjct: 414 ATPIPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYW 473

Query: 488 ICPQIEEKKESNF-RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP +EE +  +F + V   +  L E     ++ +++G M   DK   M +FK     +L
Sbjct: 474 VCPLVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVL 533

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+   
Sbjct: 534 VATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGK 593

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
            RLS+++ ++DGF +AE+DL+ R  G+I+G +QSG+  F
Sbjct: 594 RRLSLVRESQDGFYLAEKDLEIRGAGDIIGKEQSGVSTF 632


>gi|291007073|ref|ZP_06565046.1| ATP-dependent DNA helicase RecG [Saccharopolyspora erythraea NRRL
           2338]
          Length = 740

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 229/729 (31%), Positives = 370/729 (50%), Gaps = 82/729 (11%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S  R +G K +  L   ++          DLL ++P  + +R     I+ +  +   T+
Sbjct: 1   MSLERVLGAKTAKALESALDLSTVG-----DLLRHYPRRYAERGELTAIAGLEIDEHATV 55

Query: 73  TGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFF---YRKTEMLKNVFFEGRKITVTG 127
              + + S   ++ RR    +  + DG   +   FF   +R+ E+L      GR+    G
Sbjct: 56  LAQVERVSKRSMKSRRGTIVEARITDGHRSLICTFFNQAWRERELLP-----GRRGMFAG 110

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFP--------LIEAVYSLPTGLSVDLFKKIIVEAL 179
           K+   +N++ + HP Y     +D +           +  VY    GL      + + + L
Sbjct: 111 KVTAYRNQLQLAHPEYQLFTGEDEDVSEAAEEFAGALIPVYPSAQGLPSWSIARCVRQVL 170

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
                  + +  +L  +     +  A   IH PR   DF   + A+ERL +DE LA Q+A
Sbjct: 171 DTWDGEDDPLPGELRTRLGLTGLEAALRKIHRPR---DFGEVTAAQERLKWDEALAVQLA 227

Query: 240 LLLMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           L  +R +         P   +G +A    + +PF  T  Q    +DI  D++ ++ M R+
Sbjct: 228 LARLRGEAHAHPAPACPRRDDGILA-AFDKRLPFELTGGQREIGEDIAADLAVEHPMNRL 286

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII------ 351
           +QG+VGSGKT+VAL AM   V++G QA ++AP  +LA QH   + +      +       
Sbjct: 287 VQGEVGSGKTVVALRAMLQVVDSGRQAAMLAPTEVLAAQHARSLAELLGELGMAGELGGA 346

Query: 352 -----VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
                V ++TG MP A RRKAL   A G+A I++GTHA+ QD + +  L LV+VDEQHRF
Sbjct: 347 EQATRVTLLTGTMPAAQRRKALLEAASGEAGIVVGTHAIIQDRVSFADLGLVVVDEQHRF 406

Query: 407 GVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           GV+QR  L  +     +PHVL+MTATPIPRT+ +T  GD++ S + E P GR PI T ++
Sbjct: 407 GVEQRDALRARGGDEVSPHVLVMTATPIPRTVAMTVYGDLETSALRELPIGRSPISTNVV 466

Query: 464 PI----NRIDEVIERLKVVLSEGKKAYWICPQIEE-------KKESNFRSVVERFNSLHE 512
           P+    + +D V +R+   ++ G + Y +CP+I +       K++S+  S V+  +   E
Sbjct: 467 PVAEKPSWLDRVWQRIHEEVAAGHQVYVVCPRIGDDEETEGKKRKSSRSSAVDDSDGADE 526

Query: 513 H---------------------------FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
                                        +  + ++HGR+   DK++VM  F  G   +L
Sbjct: 527 PPPEDSGGQRRPPVAVLDVAEQLAAGPLASLRLGVLHGRLPADDKDAVMRGFAAGDIDVL 586

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTV+EVG++V +A++++I +A+ FG++QLHQLRGRVGRG     C+L+        + 
Sbjct: 587 VATTVVEVGVNVPNATVMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEAMGGTTTR 646

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664
            RL  + +T DGF +A  DL+ R+EG+ILG  QSG    L     L D  ++  AR++A+
Sbjct: 647 ERLEAVASTTDGFELARLDLELRREGDILGAAQSGRKSGLKMLSLLRDEDVIAQARQEAE 706

Query: 665 HILTQDPDL 673
             + +DP+L
Sbjct: 707 SFVAEDPEL 715


>gi|330837736|ref|YP_004412377.1| ATP-dependent DNA helicase RecG [Spirochaeta coccoides DSM 17374]
 gi|329749639|gb|AEC02995.1| ATP-dependent DNA helicase RecG [Spirochaeta coccoides DSM 17374]
          Length = 699

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 230/700 (32%), Positives = 364/700 (52%), Gaps = 35/700 (5%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           F+  L  P+++  GVGK   L    +   G   +    D+L   P S+ DR     +  +
Sbjct: 2   FIRQLQEPIASLPGVGKSARLGYDAL---GIRTQG---DVLLLSPRSWEDRSIIVPLGSV 55

Query: 65  S----EERIVTITGYISQHSSF--QLQKRRPYKILLND----GTGEITLLFFYRKTEMLK 114
           +    E  +V     +   S F  + + +R  K+++ D    G G ++LL F R  + L+
Sbjct: 56  ARNTGENTVVNTFVQVLSQSWFGGRTRGKRTLKVIVRDISGNGDGRLSLLCFGR--DFLE 113

Query: 115 NVFFEGRKITVTGK----IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDL 170
            V   GR   V  +    + +L++    V P      S    F  +  +Y L   LS  +
Sbjct: 114 KVLVTGRTFYVYAQAAYHMTELQSSQFEVIPMRD-DGSPPAEFGAVLPIYPLSGSLSQRI 172

Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
            ++ +   L+      E +   L+   +      A  + H P   +D +    AR+ LA+
Sbjct: 173 IRRDVAAVLAARSFDDE-LPPSLMDAYALLPTDRAIRMWHQPSSLEDVK---KARQTLAF 228

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIA---QKILRNIPFSPTKSQESAIKDILQD 287
            EL   Q   L+ R++  +     +   G+I    ++ +  +PFS T  QE+ +K+I  D
Sbjct: 229 TELFYLQ---LVTRRRAVRTDSSTLKSPGEITGSEKRFISLLPFSLTADQETVLKEIRMD 285

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           +   + M R+LQGDVGSGKTLVA I+    +  GGQ   MAP  +LA+QH E   +    
Sbjct: 286 LDSSSPMNRMLQGDVGSGKTLVAWISALHVLSHGGQVAFMAPTELLARQHAENAARLLAP 345

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + +  +TG++    R+  L+ +  G   +IIGTHALF   +++ +L  VI+DEQHRFG
Sbjct: 346 AGVRLAFLTGSVKGKERKLILDNLKAGNIDVIIGTHALFSKEVEFRRLRFVIIDEQHRFG 405

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           V QRL L  KA  P VLLMTATPIPRTL LT  GD+++S I   P GR P+ T ++    
Sbjct: 406 VGQRLALMDKAATPDVLLMTATPIPRTLALTVFGDLNVSTIHTMPPGRLPVITHLVSDAS 465

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRM 525
            + + + + +    G + Y++ P+I++   S+ R V   F  L       I  A++H R+
Sbjct: 466 RERMYKAVGIEFFRGHQGYFVYPRIDDSGTSDIRDVTNMFEYLSTRVYPGIPSALLHSRI 525

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            + +K  +++ F+      L++T+V+EVGID+ +A+ +++E+A+HFGL+ LHQLRGRVGR
Sbjct: 526 PEQEKMDILERFRRKELMYLVSTSVVEVGIDIPEATCMVVEHADHFGLSALHQLRGRVGR 585

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
           G   S C L+Y  PLS ++  RL VL+ + DGF IAE+DL  R  GE+ G +QSG  +  
Sbjct: 586 GTLQSYCFLVYGEPLSDDARQRLLVLRESTDGFRIAEQDLLIRGPGEMTGTRQSGFLRLQ 645

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            A       ++ +ARK+A  +L  DP   S+    IR +L
Sbjct: 646 FADLTTDVEIIVVARKEADAVLQADPAFLSLSHSVIRDVL 685


>gi|206602183|gb|EDZ38665.1| Putative ATP-dependent DNA helicase (RecG) [Leptospirillum sp.
           Group II '5-way CG']
          Length = 713

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 229/684 (33%), Positives = 372/684 (54%), Gaps = 38/684 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PL     +GKK +  L        A     +DLL+  P  + DR   P I ++   +
Sbjct: 8   LVSPLHVVPDIGKKRAEKLEL------AGYRTVLDLLYCFPFRYEDRRAAPSIRQLVTGK 61

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL-----LNDGTGEITLLFFYRKTEMLKNV------F 117
               +G++++    + +  R +++      L DG+GE+  ++F ++  +LK +      F
Sbjct: 62  P---SGFVARVRDIRKKALRNFRVPVIEADLEDGSGEVRAVWFGQEY-LLKTLPPGSMGF 117

Query: 118 FEGR-KITVTGKIKKLKNRII-MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175
           F G+ +I+    +  L++ ++  +        S  VN   I  VY    GLS   F+K I
Sbjct: 118 FYGKPEISAYDGLLTLRSPVVEKMDEEKKGQKSFHVN--RIVPVYHESHGLSSSFFRKTI 175

Query: 176 VEALSRL-----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW----TSPARE 226
              L+ L       LP  +   L     FP+I    +    P    D +       P R 
Sbjct: 176 GIVLTSLWGNGFEPLPHSVLTSLGIMGWFPAIV-GMHFPRTPPVEGDIDSLLLPEYPPRR 234

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDIL 285
           R  ++EL   +  +   +K+ +           + A+   R ++P++ T++Q+ A ++I 
Sbjct: 235 RFIFEELFFLEFLMGFKKKEIRLSSRSRNRQTPESAETAFRESLPYALTEAQKRACREIA 294

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            DMS+ + M R+L GDVGSGKT+VA   +  +   G Q+ +MAP  +LAQQHY  +    
Sbjct: 295 SDMSKPSPMNRLLLGDVGSGKTVVAAWGVYLSFCGGMQSALMAPTEVLAQQHYASLTSLL 354

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +   I   ++T ++ ++ +R  +E +  G    ++GTHAL QD++ +  L  ++VDEQH+
Sbjct: 355 KPHGIRTALLTQSVKKSEKRTLMEAVHRGDVDFVVGTHALIQDALVFSSLGYIVVDEQHK 414

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+QR  L QK   P VL+MTATPIPR+L L+  GD+D+S + E+P GR+P+KT I+  
Sbjct: 415 FGVEQRKTLIQKGENPDVLVMTATPIPRSLALSYFGDLDLSVLDERPPGRQPVKTDIVAK 474

Query: 466 NRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHG 523
           NR +    E +   L  G++ + + P IEE +E N R     F +L + + S +  ++ G
Sbjct: 475 NRRECFWDESVAPALDRGEQVFVVYPLIEESEEENIRDATSMFGTLSQKWPSVATGLLTG 534

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M   +K +VM++F++G  +LL++TTV+EVG+D+  A+++++ENAE FGLAQLHQLRGRV
Sbjct: 535 KMPWEEKAAVMEAFRSGKIRLLVSTTVVEVGVDIPGATVMVVENAERFGLAQLHQLRGRV 594

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG    +C L+  P  S+ S  RL +L  TEDGF +AEEDL+ R  GE +G +QSG+P 
Sbjct: 595 GRGSLPGTCYLIPGPDASRESAGRLEILAQTEDGFQVAEEDLRLRGPGEFIGTRQSGLPM 654

Query: 644 FLIAQPELHDSLLEIARKDAKHIL 667
           F +A       +L +AR+ A   L
Sbjct: 655 FQVASLVRDVDILLLAREQASMFL 678


>gi|311740524|ref|ZP_07714351.1| DNA helicase RecG [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304044|gb|EFQ80120.1| DNA helicase RecG [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 710

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 232/684 (33%), Positives = 372/684 (54%), Gaps = 78/684 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           +LL ++P  +I  +    + + +E  IVT+TG I+  +     K     + L+   G I 
Sbjct: 33  ELLAHYPRDYIRHNKDVGLGDAAEGDIVTVTGTITGFTRHDSGKTTIINVQLD---GSIV 89

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS--------QDVNFP 154
             FF      +  + + G+++ ++GK+K  +N+  +  P ++  ++         D   P
Sbjct: 90  ATFF--NANYVMRMLYRGQRVMMSGKLKFFRNQPQLQQPDFVEIDAFGRPDGELDDYRQP 147

Query: 155 LIEA--------------------------------VYSLPTGLSVDLFKKIIVEALSRL 182
             E+                                VY   + ++       I   LS+ 
Sbjct: 148 AAESGKKHRPKATGSLRNLSQFGRLDQLLLEREWIPVYPATSKVTSWYIMGAIHYVLSKT 207

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
           P + E ++  ++      S+ +A   IH P +A  +     A +RL Y+E L+  I L++
Sbjct: 208 PPIEEPLDYQMI-----ISLDKAVREIHEPGEAGPYR----AIQRLKYNEALS--IGLVM 256

Query: 243 MRKQFKKEI----GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
             +Q   E      +P  + G   +++L ++PF  T+ Q   I +I  D+++   M+R+L
Sbjct: 257 ALRQRDAEARTASTMPATL-GGYREELLSHLPFDLTEGQRRVISEIEDDLARPLPMMRLL 315

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QG+VGSGKT+VA  AM  AV+AG QA ++AP  +LA QH   I         +V ++TG+
Sbjct: 316 QGEVGSGKTMVATCAMLQAVDAGTQAALLAPTEVLASQHAASIGTSVPEGVKVV-LLTGS 374

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           M  A +R+AL  I  G A I+IGTHA+ QDS++++ L LV+VDEQHRFGV+QR  L  KA
Sbjct: 375 MRTADKRQALLDIVSGDADIVIGTHAIIQDSVEFFNLGLVVVDEQHRFGVEQRDSLRLKA 434

Query: 419 T---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVI 472
               +PHVL+MTATPIPRT+ +T  GD+ +S +TE P GRKPI++ ++   R   +   +
Sbjct: 435 REGLSPHVLVMTATPIPRTIAMTVFGDLAVSTLTELPGGRKPIQSAVVAEWRPTWVLRAL 494

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH-FTS-SIAIIHGRMSDIDK 530
           ER++  ++ G +AY +CP+IE K       V+E    L    F    +AI+HG+M +  K
Sbjct: 495 ERIREEVAHGHQAYIVCPRIEGKG-----GVLELAQQLENGPFKGLRVAILHGKMPN--K 547

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + VM SF  G   +L++TTVIEVG+DV +A++++I  +EHFG++QLHQLRGRVGRG   S
Sbjct: 548 DEVMTSFARGEIDILVSTTVIEVGVDVPNATVMLIRESEHFGVSQLHQLRGRVGRGGNAS 607

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+L      +  S+ R++ +  T  GF +AE DL+QR+EG+ILG  QSG  + L     
Sbjct: 608 VCLLHTTAADNTPSFRRITQIAQTSSGFELAELDLRQRQEGDILGTMQSGTHRTLRLLNL 667

Query: 651 LHD-SLLEIARKDAKHILTQDPDL 673
             D  ++E    DA+ ++ ++P+L
Sbjct: 668 ADDQDIVERTHTDARAMVMRNPEL 691


>gi|300771630|ref|ZP_07081505.1| DNA helicase RecG [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761619|gb|EFK58440.1| DNA helicase RecG [Sphingobacterium spiritivorum ATCC 33861]
          Length = 701

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 247/709 (34%), Positives = 371/709 (52%), Gaps = 52/709 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG + +  L K +           DLL Y+P  +IDR    KI ++  + 
Sbjct: 6   LITPIEYLKGVGPQKADILKKELQVFTIG-----DLLEYYPFRYIDRTQFHKIHKLHPDM 60

Query: 69  I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           I   + G +        ++ R       D +G I L++F +    LK     G    + G
Sbjct: 61  IGAQVLGRLVGLQEVGEKRGRRLVGQFRDDSGSIELVWF-QSIPWLKKSLKIGSPYILYG 119

Query: 128 KIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGL--------SVDLFKKIIVE 177
           K  +    I + HP    +N+Q+  +    ++ VYS    L         +   ++  +E
Sbjct: 120 KPTEFNGHISITHPEMELYNAQEQKIGNQSLQPVYSSTEKLKKFNLDTRGIQRLQQTALE 179

Query: 178 ALSR-----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            + R     LPV        L+Q+       +A   IH P+  ++ +    A  RL ++E
Sbjct: 180 TVYRSIGDMLPVY-------LIQEHRLIEYPKALLAIHFPKSQQELDQ---AIRRLKFEE 229

Query: 233 LLAGQIALL----LMRKQFK----KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
           L   Q+ LL    L   +FK     ++G  +N            +PF  T +Q+  IK+I
Sbjct: 230 LFFIQLRLLNNKQLNTLKFKGHRFDQVGEKVNT------FFNEKLPFPLTNAQKRVIKEI 283

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
            QD +   +M R++QGDVGSGKT+VAL++M  A++ G QA +MAP  ILA QHY  + + 
Sbjct: 284 RQDTNTGAQMNRLVQGDVGSGKTVVALMSMLLAIDNGFQACMMAPTEILATQHYASVSEL 343

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                  V ++TG+ P   RR   + +  G   I+IGTHAL +D +++  +  V++DEQH
Sbjct: 344 LGEGFAKVRLLTGSTPAKERRIIHQELEEGTLDILIGTHALIEDKVRFKNIGFVVIDEQH 403

Query: 405 RFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           RFGV+QR KL +K    PH+L+MTATPIPRTL +T  GD+DIS I E PAGRKPIKTV  
Sbjct: 404 RFGVEQRAKLWRKNVIPPHMLVMTATPIPRTLAMTMYGDLDISVIDELPAGRKPIKTVHF 463

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAI 520
             +    +   +K  +++G++ Y + P I+E ++ +   +     +L   F      I+I
Sbjct: 464 FESSRLRMFGFMKEEIAKGRQVYVVFPLIKESEKLDLLYLEAGLENLQREFPLPQYKISI 523

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG+M   DK+  M  F     ++++ATTVIEVG++V +AS+++IEN+E FGL+QLHQLR
Sbjct: 524 VHGKMPVKDKDFEMQRFIKHETQIMVATTVIEVGVNVPNASVMVIENSERFGLSQLHQLR 583

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG E S CIL+    LSK    RL  +  T DGF IAE DL+ R  G+I G +QSG
Sbjct: 584 GRVGRGAEQSFCILMSGNKLSKEGRLRLETMVRTNDGFEIAEVDLQLRGPGDISGTQQSG 643

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           +    IA      ++L  AR     I  +DP L S +  +I +  YL Q
Sbjct: 644 VLDMKIANLASDQAILSEARNAVISIFKEDPALQSEK--NILLSAYLKQ 690


>gi|227535922|ref|ZP_03965971.1| DNA helicase RecG [Sphingobacterium spiritivorum ATCC 33300]
 gi|227244165|gb|EEI94180.1| DNA helicase RecG [Sphingobacterium spiritivorum ATCC 33300]
          Length = 701

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 242/690 (35%), Positives = 364/690 (52%), Gaps = 44/690 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG + +  L K +           DLL Y+P  +IDR    KI ++  + 
Sbjct: 6   LITPIEYLKGVGPQKADILKKELQVFTIG-----DLLEYYPFRYIDRTQFHKIHKLHPDM 60

Query: 69  I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           I   + G +        ++ R       D TG I L++F +    LK     G    + G
Sbjct: 61  IGAQVLGRLIGLQEVGEKRGRRLVGQFRDDTGSIELVWF-QSIPWLKKSLKIGSPYILYG 119

Query: 128 KIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGL--------SVDLFKKIIVE 177
           K  +    I + HP    +N+Q+  +    ++ VYS    L         +   ++  +E
Sbjct: 120 KPTEFNGHISITHPEMELYNAQEQKIGNQSLQPVYSSTEKLKKFNLDTRGIQRLQQTALE 179

Query: 178 ALSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
            + R    +LP +    L+Q+       +A   IH P+  ++ +    A  RL ++EL  
Sbjct: 180 TVYRSIGDMLPPY----LIQEHRLIDYPKALLAIHFPKSQQELDQ---AIRRLKFEELFF 232

Query: 236 GQIALL----LMRKQFK----KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
            Q+ LL    L   +FK     ++G  +N            +PF  T +Q+  IK+I QD
Sbjct: 233 IQLRLLNNKQLNTLKFKGHRFDQVGEKVNT------FFNEKLPFPLTNAQKRVIKEIRQD 286

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
            +   +M R++QGDVGSGKT+VAL++M  A++ G QA +MAP  ILA QHY  + +    
Sbjct: 287 TNTGAQMNRLVQGDVGSGKTVVALMSMLLAIDNGFQACMMAPTEILATQHYASVSELLGE 346

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
               V ++TG+ P   RR   + +  G   I+IGTHAL +D +++  +  V++DEQHRFG
Sbjct: 347 GFAKVRLLTGSTPAKERRIIHQELEEGTLDILIGTHALIEDKVRFKNIGFVVIDEQHRFG 406

Query: 408 VQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           V+QR KL +K    PH+L+MTATPIPRTL +T  GD+DIS I E PAGRKPIKTV    +
Sbjct: 407 VEQRAKLWRKNVIPPHMLVMTATPIPRTLAMTMYGDLDISVIDELPAGRKPIKTVHFFES 466

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHG 523
               +   +K  +++G++ Y + P I+E ++ +   +     +L   F      I+I+HG
Sbjct: 467 SRLRMFGFMKEEIAKGRQVYVVFPLIKESEKLDLLYLEAGLENLQREFPLPQYKISIVHG 526

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M   DK+  M  F     ++++ATTVIEVG++V +AS+++IEN+E FGL+QLHQLRGRV
Sbjct: 527 KMPVKDKDFEMQRFIKHETQIMVATTVIEVGVNVPNASVMVIENSERFGLSQLHQLRGRV 586

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG E S CIL+    LSK    RL  +  T DGF IAE DL+ R  G+I G +QSG+  
Sbjct: 587 GRGAEQSFCILMSGNKLSKEGRLRLETMVRTNDGFEIAEVDLQLRGPGDISGTQQSGVLD 646

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             IA      ++L  AR     I  +DP L
Sbjct: 647 MKIANLASDQAILSEARNTVISIFKEDPAL 676


>gi|325474706|gb|EGC77892.1| ATP-dependent DNA helicase RecG [Treponema denticola F0402]
          Length = 678

 Score =  350 bits (899), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 227/689 (32%), Positives = 363/689 (52%), Gaps = 51/689 (7%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            PL+   GVG   +  +S++   G  N     DLL   P  + DR     + + ++ + +
Sbjct: 8   GPLTNIAGVG---AAAVSQLKRLGVENAG---DLLRLFPRDWEDRSKINVLLDWNKFQKI 61

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            +   ++ H  F   K +  K+++ D  G    L  + +   L+  F  G +  V G   
Sbjct: 62  HVEVTVAGHEWFGFGKMKTLKLIVADKNGMTASLICFNRP-FLEKSFPVGARAFVYGSFY 120

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           +    I      +     +++   ++  VY L +GL     +KII  AL    +  + I+
Sbjct: 121 RKYGEI--QSSAFDLEKPENMQSKIL-PVYPLTSGLGQAKLRKIIASALK---MYGQGID 174

Query: 191 KDL----LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL---- 242
            +L    L+K   P   E   ++H P+   + E     R  L ++E    Q A+ +    
Sbjct: 175 SELPDSILKKYGLPPKQEVLFMLHAPKSMAEVE---KGRYALIFEEFFLFQYAIGMRSIE 231

Query: 243 -------------MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
                        + K FKKE      V   +   +L  + F  T+ Q S   +I +D+ 
Sbjct: 232 RRGRLPNLEDESNIGKTFKKE-----PVLTPLQSSLLERLNFKLTQDQLSVCAEINEDLD 286

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
             N M R++QGDVGSGKTLVA +A    +E GGQ   +AP  +LA+QH E   +  +   
Sbjct: 287 GPNPMARLMQGDVGSGKTLVAFLACLKVIEQGGQTAFLAPTELLARQHAENAARLLEPLG 346

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + +  +TGN     R + L+ +  G   +IIGTH+LF   +QY  L L ++DEQHRFGV 
Sbjct: 347 VRLAFLTGNTKAKGRSRLLQELQKGNIDLIIGTHSLFSQGVQYKNLRLAVIDEQHRFGVL 406

Query: 410 QRLKLTQKAT-------APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           QR  + QK         +PH+L+M+ATPIPRTL L+  GD+DIS I   P GRKPI T +
Sbjct: 407 QRSAIIQKGAESNEEKKSPHLLMMSATPIPRTLALSIFGDLDISTIKTMPPGRKPIITYV 466

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAII 521
              ++ + V   +   + +G++AY++ P IEE ++ + +S    F  L   F + S+A+I
Sbjct: 467 AGEDKAERVYNFIGQEILQGRQAYFVYPLIEENEDLSLKSAERMFEELKTGFPNHSLALI 526

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           H ++++ +++ +M  F++G   +L+AT+V+EVG+DV +A+ ++IE+A+ FGL+ LHQLRG
Sbjct: 527 HSKVAEEEQKRIMQEFRSGKLNILVATSVVEVGVDVPNATCMVIEHADRFGLSALHQLRG 586

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           RVGRG+  S C L+Y   ++++   RL+V+K T DGF+IAEEDL+ R  G+I G++QSG 
Sbjct: 587 RVGRGDLQSYCFLIYGKKITEDGRARLTVMKETNDGFIIAEEDLRLRGPGDIGGVEQSGY 646

Query: 642 P-KFLIAQPELHDSLLEIARKDAKHILTQ 669
              F IA P     +L+ AR  A  +L Q
Sbjct: 647 HLGFTIADPARDFKILQEARSAAFELLEQ 675


>gi|328676417|gb|AEB27287.1| ATP-dependent DNA helicase RecG [Francisella cf. novicida Fx1]
          Length = 679

 Score =  350 bits (899), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 219/612 (35%), Positives = 351/612 (57%), Gaps = 16/612 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL   P  + D      I+ +   +   I G ++ + +++   ++  +  +ND TG  +
Sbjct: 27  DLLTIFPKVYKDTRVITPINHLVAGKRSLIQGRVT-NLTYKKFGKKFLRFNINDNTGFCS 85

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYS 161
           ++ F      L  +  +   +   GK++       MVHP +   N+ +        AVY 
Sbjct: 86  VILFKFYPNQLA-ILEKSEYVRCYGKVE-FSLSPQMVHPEWATVNNGECTLKQGFSAVYR 143

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
           L   +   L  K+I++ L    V    I   LL++ +  S  +A   +H      D ++ 
Sbjct: 144 LKK-IPDRLISKMILKMLQDNRV-ENIIPSQLLRRFNLISFCDALYYVHALTNFIDEKYL 201

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESA 280
           S AR  + ++E+LA ++A   + K   K    P     KI Q +    +P+  T +Q+ A
Sbjct: 202 SIARFSIKFEEMLAYKLAEQNIYKNTVKAQA-PQLFLTKIQQNEFYEKLPYQLTNAQQRA 260

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I +IL D+ + N M R+LQGDVG+GKT+VA IA  AAV++G Q  +MAP  ILA+QH+ F
Sbjct: 261 ITEILDDIKKSNAMNRLLQGDVGAGKTIVATIAAYAAVKSGYQVAMMAPTEILAEQHFSF 320

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           + +Y  +  I V  + G +     R++L++I   +  +++GTHA+FQ+ ++Y  L LVIV
Sbjct: 321 LSQYLASFDIKVIPLLGKLSAKQTRESLDKIKDQKDCVVVGTHAIFQERVEYCNLGLVIV 380

Query: 401 DEQHRFGVQQRLKLTQKATA------PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           DEQHRFGV+QRL L  K+++      PH L+++ATPIPRTL +T  G++ +S + E P  
Sbjct: 381 DEQHRFGVEQRLALVSKSSSNFSDLTPHQLIISATPIPRTLAMTLYGNLKLSILDELPPK 440

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-RSVVERFNSLHEH 513
           RKPI T ++   +   +IE++K  +  G++ YW+CP +EE +  +F + V   +  L E 
Sbjct: 441 RKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYWVCPLVEESENMDFLQDVKTLYQELLEA 500

Query: 514 F-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               ++ +++G M   DK   M +FK     +L+ATTVIEVG+DV +A+I+II+NAE  G
Sbjct: 501 LGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVLVATTVIEVGVDVPNATIMIIDNAERLG 560

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           ++QLHQLRGRVGRG + S CILLY   +S+    RLS+++ ++DGF +AE+DL+ R  G+
Sbjct: 561 ISQLHQLRGRVGRGAKESYCILLYSDKISEVGKRRLSLVRESQDGFYLAEKDLEIRGAGD 620

Query: 633 ILGIKQSGMPKF 644
           ILG +QSG+  F
Sbjct: 621 ILGKEQSGVSTF 632


>gi|269127644|ref|YP_003301014.1| ATP-dependent DNA helicase RecG [Thermomonospora curvata DSM 43183]
 gi|268312602|gb|ACY98976.1| ATP-dependent DNA helicase RecG [Thermomonospora curvata DSM 43183]
          Length = 736

 Score =  350 bits (899), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 224/705 (31%), Positives = 360/705 (51%), Gaps = 56/705 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY--KILLNDGTGE 100
           DL+ ++P  +  R     +  + +   VT+   +++     + +   Y  ++ ++DG G 
Sbjct: 31  DLVHHYPRRYAQRGELTDLDGLVDGEHVTVMAEVTKVQGRTIPRSPGYLLEVTVSDGHGT 90

Query: 101 ITLLFFYRKTEM-LKNVFFEGRKITVTGKIKKLKNRII------MVHPHY-IFHNSQDVN 152
           + L FF RK     +     G +   +GK+   + R        + HP + +        
Sbjct: 91  LKLTFFGRKGAWRAEKELSPGVRGLFSGKVTTYRPRGGGRPQRQLTHPEFRVLPEEGSAG 150

Query: 153 FPLIE------AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
               E       +Y    GL     ++ +   L +L + P+ +   +L++     + EA 
Sbjct: 151 AAAREFAEEIIPIYPATKGLESWKIEECVQIVLDQLDLGPDPMPGPILRRHGLIGLGEAL 210

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKI 265
             IH PR   + E    AR RL +DE    QIAL   RK        P   V G +    
Sbjct: 211 RGIHKPRDWGELER---ARRRLKWDEAFVLQIALAQRRKAASALPAKPRPRVRGGLLDAF 267

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF+ T+ Q    ++I  D+S ++ M R+LQGDVG+GKT+VAL AM   V+ GGQA 
Sbjct: 268 DAALPFTLTEGQLQVGEEIAADLSGEHPMHRLLQGDVGAGKTVVALRAMLQVVDGGGQAA 327

Query: 326 IMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++AP  +LAQQHY  I                +    V ++TG+     RR+AL   A G
Sbjct: 328 LLAPTEVLAQQHYRSITAMLGPLAEAGRLGGADKATRVVLLTGSQGAKARRQALLEAASG 387

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIP 432
           +A I++GTHAL Q+ +Q+  L LV+VDEQHRFGV+QR  L +KA    PHVL+MTATPIP
Sbjct: 388 EAGIVVGTHALLQEHVQFADLGLVVVDEQHRFGVEQRDALREKAAGGRPHVLVMTATPIP 447

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWIC 489
           RT+ +T  GD++ S +++ P+GR  IKT ++P  R   +    ER++  +++G++AY +C
Sbjct: 448 RTVAMTVFGDLETSTLSQLPSGRAEIKTFVVPPERPAFLARTWERIREEVAQGRQAYIVC 507

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAI-------------------IHGRMSDIDK 530
           P+I  +++    +         E   + +A+                   +HG++   DK
Sbjct: 508 PRIGAQEDEEDDAPTPPPGPDEEGRRAPVAVLDLLPRLEEELLTGLRIGVLHGKLPPDDK 567

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           ++VM  F  G   +L+ATTV+EVG+DV +A++++I +A+ FG++QLHQLRGRVGRG    
Sbjct: 568 DAVMRRFAAGEIDVLLATTVVEVGVDVPNATVMVIMDADRFGVSQLHQLRGRVGRGSLPG 627

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+L+        +  RL  + +T DGF ++  DL+QR+EG++LG  Q+G    L     
Sbjct: 628 LCLLVTDAEPGSRARQRLDAVASTTDGFALSRLDLEQRREGDVLGAAQAGRHSSLRLLTL 687

Query: 651 LHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           L D  L+  AR +A  ++  DPDL      +  + + L +    F
Sbjct: 688 LKDEELIRTARTEATALVEADPDLQGHAALAAELAVMLDEERAGF 732


>gi|299139590|ref|ZP_07032764.1| ATP-dependent DNA helicase RecG [Acidobacterium sp. MP5ACTX8]
 gi|298598518|gb|EFI54682.1| ATP-dependent DNA helicase RecG [Acidobacterium sp. MP5ACTX8]
          Length = 818

 Score =  350 bits (898), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 208/551 (37%), Positives = 296/551 (53%), Gaps = 64/551 (11%)

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLL 242
           E + + L Q+   P   EA   +H P             +PA  RL ++E    ++ L L
Sbjct: 243 ETLPQALRQRLGLPGRMEALQALHFPPAGTPITELMSARTPAHRRLIFEEFWYLELGLEL 302

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            R++ +   G     + K+ + + + +PF PT +Q+  + +I+ DM     M R+LQGDV
Sbjct: 303 KRRKLRTRAGTAFLTDEKVREALKQVLPFKPTSAQKRVLGEIVTDMRASRPMRRLLQGDV 362

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-------QIIVEII 355
           GSGKT+VAL A   A+E G QA +MAP  ILA QHY   +K   +           V ++
Sbjct: 363 GSGKTIVALQAALVAIENGYQAAMMAPTEILATQHYLSARKLLADAISPHTGRPYRVALL 422

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++ +  +R    RI  G+  + IGTHAL ++ + +  L LVIVDEQHRFGVQQR KL 
Sbjct: 423 TGSLDERAKRDVRGRIFRGETDLAIGTHALVEEKVDFENLGLVIVDEQHRFGVQQRFKLM 482

Query: 416 QK------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           +K      AT P VL+MTATPIPRTL LT  GD+++S I E P GR PI T  +P  R  
Sbjct: 483 RKPGANGVATEPDVLVMTATPIPRTLALTVYGDLEVSIIDELPPGRTPIVTRRMPEERSS 542

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESN------------------------------ 499
           EV   ++  +  G++AY + P IE +K+                                
Sbjct: 543 EVWNFVRKQIVAGRQAYIVYPVIEGEKDDQPELDFAQDSSESVSQQVSESAALPKKQKNG 602

Query: 500 --------------FRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
                          RS  E F+ L     S   + ++HGRMS  DKE  M  FK G   
Sbjct: 603 KKASSARKSADRVKLRSATEMFDELSSGALSGMKLGLLHGRMSADDKEVTMARFKRGEID 662

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +LI+TTVIEVG+DV +A++++IE+AE FGLAQ+HQLRGRVGRG   S C+LL    +S  
Sbjct: 663 VLISTTVIEVGVDVPNATVMVIEHAERFGLAQMHQLRGRVGRGAAKSYCVLLTGSSVSPE 722

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL  +  T++GF +AE DL+QR  GE  G +Q+G+P+F +A        LE+A+ +A
Sbjct: 723 AEQRLDAMVRTQNGFELAEFDLEQRGPGEFFGTRQTGLPEFHVASLARDREFLELAKSEA 782

Query: 664 KHIL-TQDPDL 673
            H +   DP++
Sbjct: 783 AHFVEAPDPNI 793


>gi|297588350|ref|ZP_06946993.1| DNA helicase RecG [Finegoldia magna ATCC 53516]
 gi|297573723|gb|EFH92444.1| DNA helicase RecG [Finegoldia magna ATCC 53516]
          Length = 678

 Score =  350 bits (898), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 232/667 (34%), Positives = 356/667 (53%), Gaps = 28/667 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI-SEERIVT 71
           LS  +G+GKK  L +   +   + N     DLL Y P  + +R     I +   EE  V 
Sbjct: 3   LSEIKGIGKK-KLEVLNSMGIFDVN-----DLLNYFPYRYENRSIIKNIIDTRDEESCVI 56

Query: 72  ITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
              +IS+  +  L++       +  D T +I++ +F      ++N         + GKI 
Sbjct: 57  KVKFISKPVTKYLRRNLNLTSAIAFDDTSKISVSWF--NQPFIRNQILPNTTYYLYGKIN 114

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-----PVL 185
           +++N+  +  P  I   S      +I  +Y +  G++ +   K I  A+         V+
Sbjct: 115 RVQNQFKISSP--ILSKSFGGKLGIIYPIYKVKKGVTNNDMIKFIDFAIKHCIDEIKNVI 172

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           P  + K+         I    N I N  K  D+     AR  L  +E++  Q+A+  M+ 
Sbjct: 173 PYSMIKNY-------DIENKRNAIKNIHKPVDYAQFKRARTALVLEEVIIMQLAMKSMKT 225

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
              ++  I    +  I    ++++ F  TK Q  AIKDI  DM+ + RM R++QGDVGSG
Sbjct: 226 TLNEQNYIKFKTDESI-DIFIKSLKFELTKGQLEAIKDIESDMTSEKRMNRLVQGDVGSG 284

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  A+  +  +G Q+  MAP  ILA QHYE +        + V ++  ++ ++ + 
Sbjct: 285 KTIVAEAAIFKSYSSGYQSAFMAPTDILATQHYESLSDDFSKFGLKVCLLKSDLTKSEKD 344

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
             LE I  G   +I+GTHA+ QD +++ KL LVI DEQHRFGV QR K++ K   P VL+
Sbjct: 345 SVLEGIKSGYFDVIVGTHAIIQDFVEFKKLGLVITDEQHRFGVGQRKKISDKGQNPDVLV 404

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L+  GD+DIS I E P GRK I+T  +  +    +   ++  +  G +A
Sbjct: 405 MTATPIPRTLALSYYGDLDISTINEMPKGRKIIETYSVGFSYEKRIAAFIRKQVENGFQA 464

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE +  +  +V E +N L   + S I   ++HG+M   +KE VM  F +G  K
Sbjct: 465 YVVCPLIEESEALDLENVTELYNRLSSEYFSDINVGMLHGKMKSSEKEEVMKEFVDGKTK 524

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V  A++I+I NAE FGL+QLHQLRGRVGR  + S CIL+ +   S  
Sbjct: 525 ILVSTTVIEVGVNVKKANVIVIYNAERFGLSQLHQLRGRVGRSSDQSYCILINNAH-SDE 583

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R++++  T  GF ++++DL  R  G++LG +QSG+P   IA  E    L+E A    
Sbjct: 584 QMERMNIMVKTNSGFELSQKDLMMRGSGDLLGTRQSGIPLLNIADLEKDYELIEKAAVIT 643

Query: 664 KHILTQD 670
            +I T D
Sbjct: 644 DYIYTND 650


>gi|32471209|ref|NP_864202.1| ATP-dependent DNA helicase RecG [Rhodopirellula baltica SH 1]
 gi|32396911|emb|CAD71879.1| ATP-dependent DNA helicase RecG [Rhodopirellula baltica SH 1]
          Length = 734

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 223/677 (32%), Positives = 359/677 (53%), Gaps = 54/677 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYK-----ILLNDG 97
           D+LF  P +        K+++++E +  T  G I+     +L  R P K     I+ ND 
Sbjct: 44  DILFLFPRNHTFPPPPTKVADLAEGQPATFIGTITDA---ELVSRTPGKSIFAAIVEND- 99

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQ--DVNFP 154
           +G + ++FF +     + + FE  ++ ++G  K    R    HP Y I    +  D + P
Sbjct: 100 SGAVRIVFFNQPFRA-EQLTFE-TQVRISGAPKLAGLRWEFTHPQYEIVQEGELPDEDAP 157

Query: 155 --LIEAVYSLPTGLSVDLFKKIIVEALSRLP-----VLPEWIEKDLLQKKS--------- 198
             LI A Y L  G+     +++    ++ L      VLPE +  +  Q+ +         
Sbjct: 158 GGLILANYPLTEGIKQSDLRRLARPLVNELAGQLTEVLPERLRTEAAQRLNAAGMELPDV 217

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INV 257
            P I++A   IH P    D    + A+ RL + ELL  Q+AL + R+    E+  P +  
Sbjct: 218 LPGISDALRGIHLPESEADL---TAAQTRLVFQELLVMQLALAMRRRSLTSELRAPSLEC 274

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
              +  +ILR  PF  T  Q   +  I  DM+++  M R+LQGDVGSGKT+VA+ AM  A
Sbjct: 275 TATVRNRILRRFPFELTGDQRRVMDVIAADMARQFPMNRLLQGDVGSGKTVVAIFAMLVA 334

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           V  G QA +MAP  +LA+QH+  +++   ++++ V ++ G++  A RR  +E+I  G+  
Sbjct: 335 VAGGHQATLMAPTEVLARQHHATLQRMLADSRVRVGLLCGSLGAAERRGTVEKIRTGELD 394

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGT AL    +++++L L ++DEQH+FGV+QR+ L      PH L+M+ATPIPR++ +
Sbjct: 395 IVIGTQALLY-GVEFHRLGLCVIDEQHKFGVKQRVTLRDGGVDPHYLVMSATPIPRSVAM 453

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           T  GD+D+S + EKPAGR  + T +   +  D     +K  ++EG++A+ + P++  + E
Sbjct: 454 TQFGDVDLSTLREKPAGRGAVHTYLAGDSWRDRWWAFVKERVAEGRQAFVVAPRVGPEVE 513

Query: 498 SNFRSV----------VERFNSLHEHFTS---------SIAIIHGRMSDIDKESVMDSFK 538
           S    +           E   S+H  +            + ++HGRM+  +K+ VM+SF 
Sbjct: 514 SADEELSELVDPAEPPAEDITSVHSTYEQLRTGPLKGLRVGLLHGRMASDEKQQVMESFA 573

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L++TTVIEVGIDV +A+++ I     FGLAQLHQLRGRV RG       +    
Sbjct: 574 EGELDVLVSTTVIEVGIDVPNATVMAILGGNRFGLAQLHQLRGRVSRGTHAGHVCVFVDG 633

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
                   RL V + T DGF +AE D + R  G++LG +QSG  +  IA       +L++
Sbjct: 634 DKPPQDDERLKVFEQTLDGFELAEADFRLRGPGDVLGQRQSGDARLRIADLHRDVEILQV 693

Query: 659 ARKDAKHILTQDPDLTS 675
           AR+ A+  + QDP++ S
Sbjct: 694 AREMAQDWIDQDPEMES 710


>gi|320334950|ref|YP_004171661.1| ATP-dependent DNA helicase RecG [Deinococcus maricopensis DSM
           21211]
 gi|319756239|gb|ADV67996.1| ATP-dependent DNA helicase RecG [Deinococcus maricopensis DSM
           21211]
          Length = 779

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 228/665 (34%), Positives = 359/665 (53%), Gaps = 39/665 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYI-SQHSSFQLQKRRPYKILLNDGTGEI 101
           DLL  +P    DR   P + ++ + + VT++G + S++      K    ++ L D  G+ 
Sbjct: 129 DLLHAYPRRHEDRRALPNLVDVEDGQKVTVSGVVVSKNRRTPKPKMLILEVTLEDPYGQR 188

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL----IE 157
               ++ +    K +   G ++ VTG+ K+   R + +   Y F    D    L    I 
Sbjct: 189 VKCTWFNQPWAEKQLSV-GSRLIVTGRAKRF-GRSVQIGAEY-FEREDDAEGSLSTARIV 245

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            VY    G+S D  +K    AL+ +P L +++     ++     +A+A   +H P    D
Sbjct: 246 GVYEAQEGVSQDFLRKAAHTALTSVP-LDDYLPGAWRRQYGLTDLADALWGMHFP---TD 301

Query: 218 FEWTSPARERLAYDELLA--------GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
            +  + ARERL +DE L         G+  +LL ++            +G+  ++   ++
Sbjct: 302 EDHLTRARERLRFDEYLFLELRLLLQGEDGVLLGKRFL---------ADGRDIERFEGSL 352

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T +Q   + ++  DM  + +M R++QGDVGSGKT VA  A+  AV  G Q  +MAP
Sbjct: 353 PFQFTGAQRRVLHEVADDMRSEKQMARLVQGDVGSGKTAVAACALYLAVRDGYQGALMAP 412

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH++ +  Y +   + V ++ G M    + +    IA+G   +++GT AL Q+S
Sbjct: 413 TEILARQHFKNLAGYLEPLGVRVGLLIGAMTPKQKAEMQATIANGLIDVVVGTQALIQES 472

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L ++DE+HRFGV QR KL   A  P VL+M+ATPIPR+L LT+ GD+++S I 
Sbjct: 473 VRWANLGLAVIDEEHRFGVLQRRKLL--ADRPDVLVMSATPIPRSLALTAYGDLELSVID 530

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           E P GR PI+T +I      +    +   + EG++AY +   IEE +     +  +  + 
Sbjct: 531 ELPPGRTPIETKLIQDTHRRQAYGFVMRQIREGRQAYVVTSLIEENENLELLAATQLADD 590

Query: 510 LHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L      + I ++HG+MS  +K+ VMD F+     +L++TTVIEVG+DV +A++++IENA
Sbjct: 591 LKVILPDARIDLLHGKMSAAEKDEVMDRFRRREFDVLVSTTVIEVGVDVPNATVMVIENA 650

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E FGL+QLHQLRGRVGRG   S C+L+     S+ +  RL +++ + DGF+IAE DLK R
Sbjct: 651 ERFGLSQLHQLRGRVGRGSAQSYCVLIAGEH-SQKTRKRLKIIEGSTDGFVIAEADLKLR 709

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLY 688
             GEI G +QSG+P   +        ++E AR  AKHIL  DP L   R      L YL 
Sbjct: 710 GPGEIRGTRQSGLPDLQLGDIVNDVDVIEDARALAKHILAHDPKLEHPR------LTYLR 763

Query: 689 QYNEA 693
           Q  +A
Sbjct: 764 QELQA 768


>gi|323466296|gb|ADX69983.1| DNA helicase RecG [Lactobacillus helveticus H10]
          Length = 679

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 217/677 (32%), Positives = 367/677 (54%), Gaps = 30/677 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +       + G+       DLLFY P  + +    P + +I +
Sbjct: 7   NALFAPVTDLKGVGTKTA------ADLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 59

Query: 67  ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + V + G ++     S F  +K R  +K+ ++    ++ ++ F+ +   LK+    G +
Sbjct: 60  GQKVVLKGIVATEPFVSRFGYKKSRLSFKMRIDH---DVIMVNFFNQP-WLKSKIEIGEE 115

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR- 181
           + + GK    +  +      +I     D     I      P    V   K + +  L+  
Sbjct: 116 VAIYGKYNVARQSLSAFK--FIAAKENDSGMAPI-----YPVNRHVKQKKLVSLINLATD 168

Query: 182 --LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             L  + + + +++ +K    +  E    +H+P+ + +    + A+    + E    ++ 
Sbjct: 169 GFLDQVRDIVPENIREKYRLLTDQEIIQKMHHPKNSTE---ANLAKRSAIFREFFIFELQ 225

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+     K+ G P N + K   ++  ++PF  +  Q+  + +I  DM    +M R+LQ
Sbjct: 226 LALLANHDGKQAGYPKNYDLKEIAQLTSSLPFELSDDQKEVVNEIFADMHSSGQMRRLLQ 285

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA+ A+ AA+ AG Q  +M P  ILA QH++ I +  +   + V ++TGN 
Sbjct: 286 GDVGSGKTVVAVYAIFAAITAGYQVALMVPTEILATQHFKKIDELLRPLGVRVALLTGNT 345

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+    +  G  +++IGTHAL Q+++ + KL LVI+DEQHRFGV QR  L  K  
Sbjct: 346 KTLERREIYRELTDGTINVMIGTHALIQENVIFKKLGLVIIDEQHRFGVGQRQALINKGD 405

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P +L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +     +++  V ++++  L
Sbjct: 406 QPDILAMTATPIPRTLALTVYGDMTVSEIHHMPAGRKPIISSWKTSSQMKNVYQKMQDQL 465

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            +G + Y + P I E +  + ++  E    L H+     + ++HG+M    K+ +M +F 
Sbjct: 466 DQGFQIYAVTPLITESETLDLKNAEELHAKLSHDFPDQKVVLLHGQMPGPKKDEIMTAFA 525

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ +  P
Sbjct: 526 SGEINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGKTQSYCVFVADP 585

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             + +   R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F +     + + L +
Sbjct: 586 K-TDSGKARMKIIAATNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVV 644

Query: 659 ARKDAKHILTQDPDLTS 675
           A+K A+ ++ QDP L  
Sbjct: 645 AQKVARDLVQQDPKLAD 661


>gi|188588599|ref|YP_001920573.1| ATP-dependent DNA helicase RecG [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498880|gb|ACD52016.1| ATP-dependent DNA helicase RecG [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 677

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 246/680 (36%), Positives = 365/680 (53%), Gaps = 48/680 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRH---------- 56
           +++ +S+ +GVG K +  L+K   CG  N    +DLL Y P    FID +          
Sbjct: 3   IYSEISSLKGVGPKLTEKLNK---CGIFN---ILDLLLYFPRDYEFIDSNILFEDINGDE 56

Query: 57  ---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEML 113
               R K+  I  + I T TG I     F+    + Y    N               + +
Sbjct: 57  KQILRCKVIRIKGD-IKTKTGKILTTIEFEYNGHKVYGKWFN--------------QKYI 101

Query: 114 KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK 173
           KN F+  +   + GK K++   + + +P  +   + D +   I   Y L   +S  + +K
Sbjct: 102 KNTFYNNKVYNLMGKFKRIGKTLEVANPTVVCEEALDNS---ILPKYPLKGDISNKIIEK 158

Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
           +I   +  + ++ E +  D+L K +  S+ +A   IH P K KD      A  RL + EL
Sbjct: 159 LINLVIDSI-IIKENLPLDMLNKYNLVSLNDAIRSIHFP-KNKDL--LEKAIIRLKFQEL 214

Query: 234 LA-GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
                  LL+  K  K + GI      ++ +++  +IP+S T +Q   +++IL+D   + 
Sbjct: 215 FTYSLKLLLVKHKLNKNKNGIYFEWNNEL-KRLKDSIPYSLTNAQTKVVREILRDQKSQK 273

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++QGDVGSGKT+VALI++   ++ G Q   MAP  ILA QHYE  K   Q+  I V
Sbjct: 274 PMNRLVQGDVGSGKTIVALISIFNVIKNGYQCAFMAPTEILANQHYEESKNLFQDFNIDV 333

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
           EI+TG+     +++  E+I      ++IGTH LFQD + + +L L+I DEQHRFGV+QR 
Sbjct: 334 EILTGSTSLKEKKRIKEKIKQENPMLLIGTHTLFQDDVVFNRLGLIITDEQHRFGVEQRS 393

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           KL  K      L+MTATPIPRTL L    D+D+S I E P GRK I T     +  D   
Sbjct: 394 KLINKGKKADCLVMTATPIPRTLALYLYSDLDVSIIDELPPGRKKIDTRFYQEHNRDIGY 453

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDK 530
           E     ++ G++ Y +CP I+E ++    SV   +  L       I   I+HG+M   +K
Sbjct: 454 EIALEEINNGRQVYIVCPLIDEDEKEELNSVETLYTKLKNGIFKDIGVEILHGKMKSSEK 513

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           +  ++ FKN   K+LI+TTVIEVG++V +AS++IIENAE FGLAQLHQLRGRVGRGE  S
Sbjct: 514 QDKINRFKNNEFKVLISTTVIEVGVNVPNASVMIIENAERFGLAQLHQLRGRVGRGEYAS 573

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            CIL+     S  +  R++++  + DGFLI+EEDLK R  GE+ G KQSG  +F++A   
Sbjct: 574 YCILIAKAK-SNITKKRMTIMTESTDGFLISEEDLKLRGSGEMFGRKQSGDAEFILADLY 632

Query: 651 LHDSLLEIARKDAKHILTQD 670
              S+L  A+ +A  +L  D
Sbjct: 633 EDISILRAAKHEAMEMLHND 652


>gi|251779934|ref|ZP_04822854.1| ATP-dependent DNA helicase RecG [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084249|gb|EES50139.1| ATP-dependent DNA helicase RecG [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 677

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 246/680 (36%), Positives = 365/680 (53%), Gaps = 48/680 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRH---------- 56
           +++ +S+ +GVG K +  L+K   CG  N    +DLL Y P    FID +          
Sbjct: 3   IYSEISSLKGVGPKLTEKLNK---CGIFN---ILDLLLYFPRDYEFIDSNILFEDINGDE 56

Query: 57  ---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEML 113
               R K+  I  + I T TG I     F+    + Y    N               + +
Sbjct: 57  NQILRCKVIRIKGD-IKTKTGKILTTIEFEYNGHKVYGKWFN--------------QKYI 101

Query: 114 KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK 173
           KN F+  +   + GK K++   + + +P  +   + D +   I   Y L   +S  + +K
Sbjct: 102 KNTFYNNKVYNLMGKFKRIGKTLEVANPTVVCEEALDNS---ILPKYPLKGDISNKIIEK 158

Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
           +I   +  + ++ E +  D+L K +  S+ +A   IH P K KD      A  RL + EL
Sbjct: 159 LINLVIDSI-IIKENLPLDMLNKYNLVSLNDAIRSIHFP-KNKDL--LEKAIIRLKFQEL 214

Query: 234 LA-GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
                  LL+  K  K + GI      ++ +++  +IP+S T +Q   +++IL+D   + 
Sbjct: 215 FTYSLKLLLVKHKLNKNKNGIYFEWNNEL-KRLKDSIPYSLTNAQTKVVREILRDQKSQK 273

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++QGDVGSGKT+VALI++   ++ G Q   MAP  ILA QHYE  K   Q+  I V
Sbjct: 274 PMNRLVQGDVGSGKTIVALISIFNVIKNGYQCAFMAPTEILANQHYEESKNLFQDFNIDV 333

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
           EI+TG+     +++  E+I      ++IGTH LFQD + + +L L+I DEQHRFGV+QR 
Sbjct: 334 EILTGSTSLKEKKRIKEKIKQENPMLLIGTHTLFQDDVVFNRLGLIITDEQHRFGVEQRS 393

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           KL  K      L+MTATPIPRTL L    D+D+S I E P GRK I T     +  D   
Sbjct: 394 KLINKGKKADCLVMTATPIPRTLALYLYSDLDVSIIDELPPGRKKIDTRFYQEHNRDIGY 453

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDK 530
           E     ++ G++ Y +CP I+E ++    SV   +  L       I   I+HG+M   +K
Sbjct: 454 EIALEEINNGRQVYIVCPLIDEDEKEELNSVETLYTKLKNGIYKDIGVEILHGKMKSSEK 513

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           +  ++ FKN   K+LI+TTVIEVG++V +AS++IIENAE FGLAQLHQLRGRVGRGE  S
Sbjct: 514 QDKINRFKNNEFKVLISTTVIEVGVNVPNASVMIIENAERFGLAQLHQLRGRVGRGEYAS 573

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            CIL+     S  +  R++++  + DGFLI+EEDLK R  GE+ G KQSG  +F++A   
Sbjct: 574 YCILIAKAK-SNITKKRMTIMTESTDGFLISEEDLKLRGSGEMFGRKQSGDAEFILADLY 632

Query: 651 LHDSLLEIARKDAKHILTQD 670
              S+L  A+ +A  +L  D
Sbjct: 633 EDISILRAAKHEAMEMLHND 652


>gi|116333593|ref|YP_795120.1| RecG-like helicase [Lactobacillus brevis ATCC 367]
 gi|116098940|gb|ABJ64089.1| ATP-dependent DNA helicase RecG [Lactobacillus brevis ATCC 367]
          Length = 677

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 235/668 (35%), Positives = 372/668 (55%), Gaps = 40/668 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K    L  +    N N     DLL Y P  + D   +   +E++++  VT+
Sbjct: 8   VSQLAGVGPKRVQALQSL-GIENMN-----DLLTYFPFRYEDLQAKDP-AELTDQAKVTL 60

Query: 73  TGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            G ++     + F  +K R    LL D    + + FF +    LK+    G +I V G+ 
Sbjct: 61  KGTVAGAPVLTRFGRKKNRLNFRLLVDEHTAMPVTFFNQP--WLKDQLEVGNEIVVYGRF 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-----LPV 184
              +  +  +        S D     + ++Y     +     KK++ EA  +     + +
Sbjct: 119 DAKRQSLAGMK----ILASADSG---MGSIYPANKEIRQGTVKKLVAEAYEQYASVIVDL 171

Query: 185 LPEWIEKD--LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
           +PE + +   LL ++          +IH+     D      AR    ++E    ++ L +
Sbjct: 172 IPETLREHYRLLHRRE---------MIHDMHFPADETAAQAARRTAKFEEFYLFELRLQI 222

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           ++ Q     G P+  +    +  + ++P+  T +Q+  + +I  D+ +   M R+LQGDV
Sbjct: 223 VKLQDHTLHGQPLAYDLSKLKAFIASLPYELTAAQKRVVNEICFDLKRPIHMNRLLQGDV 282

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA IAM AA+ AG QA +MAP  ILA+QH   + K   +  + V ++TG    A
Sbjct: 283 GSGKTVVAAIAMYAAITAGAQAALMAPTEILAEQHANNLAKLFADFPVNVALLTGATKAA 342

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R+  L +IA G   ++IGTHAL Q  + Y++L L ++DEQHRFGV QR  L +K   P 
Sbjct: 343 ARKTLLPQIAQGGVDLLIGTHALIQPEVTYHQLGLAVIDEQHRFGVNQRQALREKGQQPD 402

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL +T+ G++D+S I E PAGR+PIKT  I  N++D  + ++K  LS G
Sbjct: 403 VLAMTATPIPRTLAITAYGEMDVSVINELPAGRQPIKTTWIRSNQVDATLRQVKAELSTG 462

Query: 483 KKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +AY + P IEE +     N  ++ ERF +  E  T  + ++HGRM D +K ++M +FK 
Sbjct: 463 SQAYVVTPLIEESEAVDMKNAEAIYERFKTEFEP-TYKVGLLHGRMKDDEKNAIMAAFKA 521

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L+ATTVIEVG+DV +A++++I +A+HFGLAQLHQLRGRVGRG   S+CIL+  P 
Sbjct: 522 NEFQVLVATTVIEVGVDVPNATLMMIYDADHFGLAQLHQLRGRVGRGTRASACILIADPK 581

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++ +  R++ + +T DGF+++++DL+ R  G+ILG KQSG+P F +  P    ++L  A
Sbjct: 582 -NQLAIERMTTMTSTNDGFVLSQKDLELRGPGDILGRKQSGVPDFKVGDPVADLNILSAA 640

Query: 660 RKDAKHIL 667
           ++ AK  +
Sbjct: 641 QQAAKETV 648


>gi|256846084|ref|ZP_05551542.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_36A2]
 gi|256719643|gb|EEU33198.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_36A2]
          Length = 689

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 228/608 (37%), Positives = 352/608 (57%), Gaps = 20/608 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEI 101
           DL++Y P ++ DR    KI E+     V +   +    +  ++  ++  K ++ DGTG +
Sbjct: 38  DLVYYFPRAYDDRTNIKKIGELKFNEYVVLKATVMSAVNLTVRSGKKIVKAMVTDGTGIM 97

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160
            +L+F      +K     G +    G+ KK      +++P Y +F   Q V+   I  +Y
Sbjct: 98  EILWF--GMPYIKKSLKIGEEYLFIGQTKK-STVFQLINPEYKLFSGQQKVSKNEILPIY 154

Query: 161 SLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           S    ++ +  +K++ + L   L    E I K+L+++        A   IH P   K+ E
Sbjct: 155 SSNKNITQNSLRKLVEKFLVNFLNYFEENIPKELIKEYKIMERKSAIKNIHYPISMKEIE 214

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQ 277
               A+ R A +ELL  ++ +L  R   +        VEGK    ++ L  + F+ T +Q
Sbjct: 215 ---EAKRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKVKEFLSQLTFNLTNAQ 271

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +  IK+I  ++S    + R++QGDVGSGKT+VA++ +    E G Q  +MAP  ILA QH
Sbjct: 272 KKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGYQGALMAPTEILANQH 331

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y  IK+  +   + VE++T ++    + + LE IA+G+  I+IGTH+L +D++ + KL L
Sbjct: 332 YLGIKERLEKIGLRVELLTSSIKGKKKNEILEGIANGEIDIVIGTHSLIEDNVVFKKLGL 391

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +++DEQHRFGV QR KL +K    ++L+M+ATPIPR+L L+  GD+D+S I E P GR P
Sbjct: 392 IVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGDLDLSIIDELPPGRTP 451

Query: 458 IKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           IKT  I     DE +E++   +    ++G +AY++ P IE   +   +SV +    +   
Sbjct: 452 IKTKWIA---NDEDLEKMYNFIYKKVNDGNQAYFVAPLIETSDKMALKSVDKVSEEIERK 508

Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           F++  I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  ++I+ I NAE FG
Sbjct: 509 FSNKKIGIIHGKMKAKEKDDVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFG 568

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+ LHQLRGRVGRG + S C L+ +  +++NS  RLS+++ TEDGF IAEEDLK R  GE
Sbjct: 569 LSALHQLRGRVGRGSKQSYCFLISN-SITENSKQRLSIMEETEDGFRIAEEDLKLRNSGE 627

Query: 633 ILGIKQSG 640
           I G++QSG
Sbjct: 628 IFGLRQSG 635


>gi|42528079|ref|NP_973177.1| ATP-dependent DNA helicase RecG [Treponema denticola ATCC 35405]
 gi|41819124|gb|AAS13096.1| ATP-dependent DNA helicase RecG [Treponema denticola ATCC 35405]
          Length = 678

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 227/688 (32%), Positives = 364/688 (52%), Gaps = 49/688 (7%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            PL+   GVG   +  +S++   G  N     DLL   P  + DR     + + ++ + +
Sbjct: 8   GPLTNIAGVG---AAAVSQLKRLGVENAG---DLLRLFPRDWEDRSKINVLLDWNKFQKI 61

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            +   ++ H  F   K +  K+++ D  G    L  + +   L+  F  G +  V G   
Sbjct: 62  HVEITVAGHEWFGFGKMKTLKLIVADKNGMTASLICFNRP-FLEKSFPVGARAFVYGSFY 120

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-----VL 185
           +    I      +     +++   ++  VY L +GL     +KII  AL          L
Sbjct: 121 RKYGEI--QSSAFDLEKPENMQSKIL-PVYPLTSGLGQAKLRKIIASALKMYAHGIDSEL 177

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PE I    LQK   P   E   ++H P+   + E     R  L ++E    Q A+ +  +
Sbjct: 178 PESI----LQKYGLPPKQEVLFMLHTPKSMAEVE---KGRYALIFEEFFLFQYAIGM--R 228

Query: 246 QFKKEIGIPINVEGK---------------IAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
             ++   +P N+E +               +   +L  + F  T+ Q S   +I +D+  
Sbjct: 229 SIERRGRLP-NLEDERNIDKTVKKEPVLRPLQSSLLERLNFKLTQDQLSVCAEINEDLDG 287

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            N M R++QGDVGSGKTLVA +A    +E GGQ   +AP  +LA+QH E   +  +   I
Sbjct: 288 PNPMARLMQGDVGSGKTLVAFLACLKVIEQGGQTAFLAPTELLARQHAENAARLLEPLGI 347

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            +  +TGN     R + L+ +  G   +IIGTH+LF   +QY  L L ++DEQHRFGV Q
Sbjct: 348 RLAFLTGNTKAKGRSRLLQELQKGNIDLIIGTHSLFSQGVQYKNLRLAVIDEQHRFGVLQ 407

Query: 411 RLKLTQKAT-------APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           R  + QK         +PH+L+M+ATPIPRTL L+  GD+DIS I   P GRKPI T + 
Sbjct: 408 RSAIIQKGAESNEEKRSPHLLMMSATPIPRTLALSIFGDLDISTIKTMPPGRKPIITYVA 467

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522
             ++ + V   +   + +G++AY++ P IEE ++ + +S    F  L   F + S+A+IH
Sbjct: 468 GEDKAERVYNFIGQEILQGRQAYFVYPLIEENEDLSLKSAERMFEELKTGFPNHSLALIH 527

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
            ++++ +++ +M+ F++G   +L+AT+V+EVG+DV +A+ ++IE+A+ FGL+ LHQLRGR
Sbjct: 528 SKVAEEEQKRIMEEFRSGKLNILVATSVVEVGVDVPNATCMVIEHADRFGLSALHQLRGR 587

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG+  + C L+Y   ++++   RL+V+K T DGF+IAEEDL+ R  G+I G++QSG  
Sbjct: 588 VGRGDLQAYCFLIYGKKITEDGRARLTVMKETNDGFIIAEEDLRLRGPGDIGGVEQSGYH 647

Query: 643 -KFLIAQPELHDSLLEIARKDAKHILTQ 669
             F IA P     +L+ AR  A  +L Q
Sbjct: 648 LGFTIADPARDFKILQEARSAAFELLEQ 675


>gi|256752285|ref|ZP_05493148.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748853|gb|EEU61894.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 432

 Score =  350 bits (897), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 183/409 (44%), Positives = 270/409 (66%), Gaps = 3/409 (0%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF  T +Q   +K+I+ DM+    M R++QGDVGSGKT+VA  +M  AV+ G Q  +MA
Sbjct: 3   LPFKLTLAQIKVLKEIIADMNSHKVMNRLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMA 62

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QHY  +K+  +NT I + +++G++  +++++ LE+I +G   I++GTHAL +D
Sbjct: 63  PTEILAKQHYHTLKELFRNTDIKIGLLSGSISPSNKKEVLEKIKNGDYDIVVGTHALIED 122

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           ++ +  L L I DEQHRFGV+QR  LTQK   P VL+MTATPIPRT  L   GD+DIS I
Sbjct: 123 NVIFNNLGLCITDEQHRFGVRQRALLTQKGENPDVLVMTATPIPRTFALILYGDLDISII 182

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            + P GRK +KT +I  +  ++  E     + +G++ Y +CP IEE  + N  S    + 
Sbjct: 183 DQLPPGRKKVKTYVISSSVREKAYEFAMKEVKKGRQVYVVCPLIEESDKINAMSAEIVYR 242

Query: 509 SLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +++     + + ++HG+M+D DKE VM+ F NG   +L++TTVIEVG++V +A+++I+E
Sbjct: 243 EIYKDAFKEAKVGLLHGKMADSDKEKVMEEFVNGKIDILVSTTVIEVGVNVPNATVMIVE 302

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           NAE FGLAQLHQLRGRVGR E  S CIL+ +   S  +  RL VL  T DGF IAE+DL+
Sbjct: 303 NAERFGLAQLHQLRGRVGRSEFQSYCILISYSN-SDIAKKRLGVLAQTSDGFKIAEKDLE 361

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            R  GE LG++Q G+P+F IA       +L+  +KD + +L +DP L +
Sbjct: 362 IRGPGEFLGLRQHGLPEFKIANIFEDIDVLKRVQKDVEELLEKDPKLEN 410


>gi|327402490|ref|YP_004343328.1| ATP-dependent DNA helicase RecG [Fluviicola taffensis DSM 16823]
 gi|327317998|gb|AEA42490.1| ATP-dependent DNA helicase RecG [Fluviicola taffensis DSM 16823]
          Length = 699

 Score =  350 bits (897), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 237/671 (35%), Positives = 374/671 (55%), Gaps = 22/671 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE-ERIVTITG 74
            +GVG + +  L   I         + DLL++ P  +IDR     I +I   +  V + G
Sbjct: 12  LKGVGPQRAKVLRDEIGIAT-----YYDLLYHFPFRYIDRSKFHAIKDIPFIDGYVQLKG 66

Query: 75  YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
            I   S     +++   +   DGTG I L++F     +L N+      I V GK K   N
Sbjct: 67  EIISVSETGTGRQKRLNVKFQDGTGIIDLVWFQGYKYILPNLKLNTTYI-VFGKAKPYVN 125

Query: 135 RIIMVHPHY--IFHNSQDVNF-PLIEAVYSLPT-GLSVDLFKKII--VEALSRLPVLPEW 188
              + HP       +  D+ + P+  +   L   GL     +K+I  +  L+      E 
Sbjct: 126 TWNISHPELNPATGSEDDLGWQPVYSSTEKLNAFGLHSKGIQKLIEHLLDLASKVYFEET 185

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I    +Q+    +   A   IH P    D      AR R  ++ELL  QI LLL +    
Sbjct: 186 IPVKFIQELKLSTFPVAIRAIHMP---ADVTLAQKARTRFKFEELLNLQIELLLRKSINM 242

Query: 248 KKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           +K  G  ++  G+I      N +PF  T +Q+  +K+I +D+    +M R+LQGDVGSGK
Sbjct: 243 QKSSGQVVSDVGQIFHDFYENNLPFPLTNAQKKVLKEIRRDIGSGFQMNRLLQGDVGSGK 302

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VAL+ +   + +  Q  +MAP  ILA QHY  +++  + T + +EI+TG+  +A RR+
Sbjct: 303 TVVALLTILMGIGSDLQGALMAPTEILANQHYVGLQELLEGTSVTIEILTGSTKKAKRRE 362

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLL 425
             E++ +G+ +I+IGTHAL +D +Q+  L +V++DEQHRFGV+QR +L +K T+ PH+L+
Sbjct: 363 IHEKLLNGEINILIGTHALLEDIVQFKNLGIVVIDEQHRFGVEQRSRLWKKNTSPPHILV 422

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  GD+D+S I E P GRKPI T          V   ++  ++ G++ 
Sbjct: 423 MTATPIPRTLAMTYYGDLDVSVIDELPPGRKPITTKHHFEKDRSLVFGFIRKEIALGRQI 482

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           Y + P I+E +  ++ ++++ + ++   F      ++I+HG+M    K+  M  F  G  
Sbjct: 483 YIVYPLIQESETLDYNNLMDGYEAISRAFPLPDYRVSIVHGKMKPEVKDYEMQQFVEGKT 542

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++++ATTVIEVG++V +AS+++IE++E FGL+QLHQLRGRVGRG E S C+L+    LS 
Sbjct: 543 QIMVATTVIEVGVNVPNASVMVIESSERFGLSQLHQLRGRVGRGAEQSYCLLMTGSKLSA 602

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           ++  R+  +  T DGF I+E DL+ R  G+I+G +QSG     IA       L+ +AR+ 
Sbjct: 603 DTKKRIHTMVRTNDGFEISEVDLELRGPGDIMGTQQSGTLDLKIADLAKDGPLVALAREK 662

Query: 663 AKHILTQDPDL 673
           A+ +LT+DP L
Sbjct: 663 ARELLTEDPRL 673


>gi|307264815|ref|ZP_07546377.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920073|gb|EFN50285.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 432

 Score =  349 bits (895), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 183/409 (44%), Positives = 268/409 (65%), Gaps = 3/409 (0%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF  T +Q   +K+I+ DM+    M R++QGDVGSGKT+VA  +M  AV+ G Q  +MA
Sbjct: 3   LPFKLTSAQIKVLKEIIADMNSHKVMNRLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMA 62

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QHY  +K+  +NT I + +++G++  +++++ LE+I  G   I++GTHAL +D
Sbjct: 63  PTEILAKQHYYTLKELFKNTDIKIGLLSGSISPSNKKEVLEKIKSGDYDIVVGTHALIED 122

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + +  L L I DEQHRFGV+QR  LTQK   P VL+MTATPIPRTL L   GD+DIS I
Sbjct: 123 DVIFNNLGLCITDEQHRFGVRQRALLTQKGENPDVLVMTATPIPRTLALILYGDLDISII 182

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            + P GRK +KT +I  +   +  E     + +G++ Y +CP IEE  + N  S    + 
Sbjct: 183 DQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQVYVVCPLIEESDKINAMSAEIVYR 242

Query: 509 SLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +++     + + ++HG+M+D DKE +M+ F NG   +L++TTVIEVG++V +A+++I+E
Sbjct: 243 EIYKDAFKEAKVGLLHGKMADSDKEKIMEEFVNGKIDILVSTTVIEVGVNVPNATVMIVE 302

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           NAE FGLAQLHQLRGRVGR E  S CIL+ +   S  +  RL VL  T DGF IAE+DL+
Sbjct: 303 NAERFGLAQLHQLRGRVGRSEFQSYCILISYSN-SDIAKKRLGVLAQTSDGFKIAEKDLE 361

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            R  GE LG++Q G+P+F IA       +L+  +KD + +L +DP L +
Sbjct: 362 IRGPGEFLGLRQHGLPEFKIANIFEDIDVLKRVQKDVEELLEKDPKLEN 410


>gi|237785785|ref|YP_002906490.1| ATP-dependent DNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758697|gb|ACR17947.1| ATP-dependent DNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 760

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 197/520 (37%), Positives = 303/520 (58%), Gaps = 43/520 (8%)

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           I + L R+P +         Q K  PS+  A   +H P    D    + AR+RLA++E L
Sbjct: 244 IPDPLPRVPTV---------QGKLLPSLDHAIRAMHMPSSWAD---QAMARKRLAFNEAL 291

Query: 235 AGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
             Q+ +L  R+    +   P     E     ++L  +PF  T  Q +  ++I  D++   
Sbjct: 292 GLQL-ILASRRHAAADRRAPQCAPREDGYRAELLAGLPFDLTDQQRAVTEEIGDDIAATR 350

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-- 350
            M R+LQGDVGSGKT+VALIAM  AV+AG QA ++AP  +LA QH   +     N  +  
Sbjct: 351 PMCRLLQGDVGSGKTIVALIAMLQAVDAGCQAALLAPTEVLAAQHAHSLMTMMANAGVAA 410

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            + ++TG+M  + R++ L  +  G+  I++GTHAL  D+++++ L LV+VDEQHRFGV+Q
Sbjct: 411 TIRLVTGSMSTSSRQETLLSLMTGETDIVVGTHALLSDNVEFFNLGLVVVDEQHRFGVEQ 470

Query: 411 RLKLTQKAT-------APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           R +L  +          PH L+MTATPIPRT+ +T+ GD+++S ITE P GRKPI++ ++
Sbjct: 471 RDRLRGRGRDTEDGPLTPHQLVMTATPIPRTVAMTTFGDLNVSTITELPGGRKPIQSSVV 530

Query: 464 PINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--- 517
           P  +   +D   +R++  +  G++AY +CP+I+              N ++E  T     
Sbjct: 531 PEWKKGWLDRAYQRIREEVESGRQAYIVCPRIQGDGG---------VNDMYEKLTVGPLH 581

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              + ++HG++ + DKE +M  F  G C +LI+TTVIEVG+DV +A++++I  AE+FG++
Sbjct: 582 GLRVGMLHGQLPNPDKERIMGKFSRGDCDVLISTTVIEVGVDVPNATLMLIREAENFGIS 641

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGR+GRG   S C+     P   +SY RL  +  T DGF +AE DL  R EG+++
Sbjct: 642 QLHQLRGRIGRGSHASWCLFHTAQPEDSDSYRRLQGVAATTDGFALAELDLATRSEGDLV 701

Query: 635 GIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDL 673
           G  QSG    +     +HD  L+E A+ +A+HI+  DP L
Sbjct: 702 GADQSGRSTHIRLLDVVHDEPLIEAAKTEAEHIVQTDPGL 741


>gi|332297440|ref|YP_004439362.1| ATP-dependent DNA helicase RecG [Treponema brennaborense DSM 12168]
 gi|332180543|gb|AEE16231.1| ATP-dependent DNA helicase RecG [Treponema brennaborense DSM 12168]
          Length = 744

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 237/755 (31%), Positives = 368/755 (48%), Gaps = 96/755 (12%)

Query: 6   LNPLFAPLSTFRGVG-KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           L  +  P+ST  G+G  +  LF +  I           DLL Y+P  + DR  R  +++ 
Sbjct: 3   LTEIETPVSTLAGIGPARAKLFAALGIYT-------VADLLAYYPRDWEDRTQRVPLAQF 55

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
                V     ++ HS F   K +  KI + DG+ +  L+ F R    L+    +G  I 
Sbjct: 56  RSNGKVHTVARVTGHSWFGYGKMKTLKIHITDGSADAELVAFNRP--FLEKSLPDGAIIA 113

Query: 125 VTGKIKKLKNRI-------IMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKII 175
           VTG   +   R+        ++ P       +    P   +  VYSL  GLS    +K +
Sbjct: 114 VTGTFSERYGRLQSSAFETALIAPGGSLAEYETKRVPGSAVFPVYSLTAGLSQAQMRKAV 173

Query: 176 VEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNP---RKAKDFEWTSPARERLAYD 231
            +AL      + + +  D+++ +       A + +H P   R+A D      AR  L Y+
Sbjct: 174 RKALQEYARGIEDTLPADVIETRHLLRKQAALHAMHCPETLRQALD------ARRTLIYE 227

Query: 232 ELLAGQIALLLMRKQFKKEIG--------------IPINVEGKIAQ-------------- 263
           EL   Q A+ L   + K  +               +P N E +  Q              
Sbjct: 228 ELYHFQTAIGLSALRHKGRLPDDEKQPFFATGSDVMPENSEREHTQETLTETFARKLSPR 287

Query: 264 --KILRNIPFSPTKSQESAIKDILQDMSQKNR-------------MLRILQGDVGSGKTL 308
             K+  ++PF  T  Q   I ++  D+ +  +             M R++QGDVGSGKTL
Sbjct: 288 QKKLFDSLPFELTADQMKCISEMNDDIDRAEQSRAKAAAGKPLYTMARLVQGDVGSGKTL 347

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
            A  A     + GGQ  ++AP  +LA+QH E   K  + T + +  +TGN+    R   L
Sbjct: 348 TAFFACLRTADWGGQCALLAPTELLARQHAESAAKLLEQTGVTLAFLTGNITAESRGPLL 407

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---------- 418
           + +  G   I+IGTHALF  ++ Y  L L ++DEQHRFGV QR  + +K           
Sbjct: 408 KSLKAGDIDIVIGTHALFSRNVHYKDLRLAVIDEQHRFGVLQRNAIIEKGRQPAAPDSPQ 467

Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P +L+++ATPIPRTL LT+ GD+D+S I   P GR P+KT +  +     V + ++ 
Sbjct: 468 YVVPSLLMLSATPIPRTLALTAFGDLDVSVIRTMPRGRLPVKTYLTRMGNEKNVYDYVRA 527

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVE-------------RFNSLHEHFTSSIAIIHGR 524
            +++G +AY++ P+IEE +  +  S++              RF S   +    IA++H R
Sbjct: 528 EVAKGHQAYFVYPRIEESESDDDGSLIPDTGNGIKNAEDMYRFLSQEVYPQFRIALVHSR 587

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           + + ++  ++D FKNG   +L+AT+V+EVG+DV +A+ +++E+A+ FG+A LHQLRGRVG
Sbjct: 588 IEEAEQHRILDDFKNGRTDILVATSVVEVGVDVPNATCMVVEHADRFGMAALHQLRGRVG 647

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           R    S C L+Y   +SK    R+  L  T DGF+IAE+DL+ R  GE+ GI+QSG    
Sbjct: 648 RSSLQSFCFLVYGAHISKTGIERMKALHETTDGFVIAEQDLQLRGPGEVSGIQQSGYLTL 707

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
            IA P     LLE+AR+DA   + + P   S   Q
Sbjct: 708 GIADPVRDSQLLELARQDAFDHIRRSPAYASALAQ 742


>gi|325280602|ref|YP_004253144.1| ATP-dependent DNA helicase RecG [Odoribacter splanchnicus DSM
           20712]
 gi|324312411|gb|ADY32964.1| ATP-dependent DNA helicase RecG [Odoribacter splanchnicus DSM
           20712]
          Length = 699

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 246/702 (35%), Positives = 370/702 (52%), Gaps = 46/702 (6%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M  + LN  F P     GVG+K +  L + +   +     + D+L++ P  +IDR     
Sbjct: 1   MELAGLNIKFLP-----GVGEKKAAVLYEELQVQS-----YEDMLYHVPFKYIDRSKIYS 50

Query: 61  ISEISEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+E++     + I   I    +    K         D TG + L++F +  + L N    
Sbjct: 51  IAELNGRLPYIQIKAKIRNLKTIGEGKALRMTATAYDETGTLELVWF-KGFKFLTNQIEP 109

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV--E 177
            ++  + G+  +  +++ +VHP               +AVY  PT    +  KK  +  +
Sbjct: 110 DKEYLIFGQPSEFNHKLNIVHPEIDSFEKASQLLVGFQAVY--PT---TEKMKKAFLNSK 164

Query: 178 ALSRL-------------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPA 224
           A+S++               LP W     +Q+     + EA   IH P      +    A
Sbjct: 165 AISKIQDSIFKTIKGKISETLPAW----FIQQHKLMYLHEALYNIHFPENP---DMLRKA 217

Query: 225 RERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKIL-RNIPFSPTKSQESAIK 282
             RL ++EL   Q+ +L ++ + K    G      G+       R +PF  T +Q+  IK
Sbjct: 218 LFRLKFEELFYIQLNILKLKYKRKTYFKGHEFKTIGEYFNTFYHRYLPFELTDAQKRVIK 277

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I QD     +M R+LQGDVGSGKTLVA++ M  A++   Q  +MAP  ILA QHYE I+
Sbjct: 278 EIRQDCGSGKQMNRLLQGDVGSGKTLVAVMCMLMALDNCCQTCLMAPTEILATQHYETIQ 337

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
                  I V ++TG+  +  R +    +  G   I+IGTHAL +D + +  + LVI+DE
Sbjct: 338 GMLGEMGITVALLTGSTKKREREEIHRGLQDGSLQILIGTHALLEDVVSFQNIGLVIIDE 397

Query: 403 QHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           QHRFGV QR KL QK T  PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T 
Sbjct: 398 QHRFGVAQRAKLWQKNTIPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTF 457

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SI 518
                +  EV + ++  L +G++AY + P I E ++ +FR++ E +  ++ +F      +
Sbjct: 458 HAFDKKRLEVFQFIEKELLKGRQAYVVYPLIYESEKMDFRNLEEGYEQINNYFLPKGYKV 517

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++HG++   +K+S M  F     K+L++TTVIEVG++V +ASI++IE+AE FGL+QLHQ
Sbjct: 518 GMVHGKLKPAEKDSEMRRFVTAETKILVSTTVIEVGVNVPNASIMVIESAERFGLSQLHQ 577

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG + S CIL+    +S +S  R+  +  T DGF IAE DLK R  G+I G +Q
Sbjct: 578 LRGRVGRGADQSYCILMTSYKISNDSRKRIDTMTATNDGFEIAEADLKLRGPGDIEGTQQ 637

Query: 639 SGMPKFLIAQPELHDSL-LEIARKDAKHILTQDPDLTSVRGQ 679
           SG+   L       D+L L  A + A  IL++D DL     Q
Sbjct: 638 SGLTCSLKVANLGKDTLILNEATRIANGILSEDADLIKEENQ 679


>gi|304439763|ref|ZP_07399661.1| DNA helicase RecG [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371750|gb|EFM25358.1| DNA helicase RecG [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 670

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 223/680 (32%), Positives = 367/680 (53%), Gaps = 49/680 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF  L T  GVG K   +L  +       ET   DL  Y P  FID      I ++ E  
Sbjct: 3   LFDKLDTLNGVGPKKKSYLEAM-----GLET-ISDLAEYFPIRFIDSTNMKPIKDLVEGE 56

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
             TI   + Q       + +   +++ DG   + + FF +    L + F +G +    GK
Sbjct: 57  FATIKAEVVQVVPHYHGRLKRLDVIVTDGFN-LKISFFNQN--FLSSTFLKGEQFYFYGK 113

Query: 129 IKKLKNRIIMVHPHY--------------IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKI 174
           + +  N + M  P +              ++  S+D+N   +           + L  ++
Sbjct: 114 VSRFGNNLTMTSPKFENVKRKKVLGSIIPVYQQSKDINNKEL-----------IKLTDQV 162

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           + E   +  VLP+    ++L+K     + +    +H P+  K +     AR   ++ E+L
Sbjct: 163 LKEYAWK-NVLPQ----EILEKYKLYDMDKTMRELHRPKSQKTY---GNARNSYSFYEIL 214

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
              +AL  ++K  ++E  I + +E +I ++ L  +PF+ T SQ   I+++  D+    R+
Sbjct: 215 IYLLALSTIKKD-REETDIKL-IEFEI-EEFLNTLPFTLTDSQMKVIEEVKGDLKSGYRV 271

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++QGDVGSGKT+VA+  M    + G Q+ IMAP  ILA QH+   K       I V +
Sbjct: 272 DRLIQGDVGSGKTVVAMAIMYLFYKNGFQSAIMAPTEILATQHHNSFKNTFDKLGINVAL 331

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           + G+M ++ + + LE +  G+  +I+GTHAL  +++++  L + IVDEQHRFGV QR  L
Sbjct: 332 LIGSMKKSQKDEVLEDLKSGKVDMIVGTHALISENVEFKNLGISIVDEQHRFGVLQRKNL 391

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
           + K    H ++MTATPIPRTL L    D+ +S I   PAGR  I+T  I  N + + +E 
Sbjct: 392 SDKGV--HTIVMTATPIPRTLALVMYQDLQVSTIDTPPAGRLKIQTATINENGLIKALEF 449

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  L EG++AY ICP I+E +  +  SV + +  + ++F   ++ ++HG+M   +K+  
Sbjct: 450 IEKELKEGRQAYIICPMIDENEMLDLNSVKKVYKEIKKYFKDYNVGLLHGQMKPDEKDRQ 509

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M+ F+     +L++TTV+EVG++V +A+++++ NAE FGL+QLHQLRGRVGRG     CI
Sbjct: 510 MEDFEKNKINVLVSTTVVEVGVNVPNATVMMVVNAERFGLSQLHQLRGRVGRGTHQGYCI 569

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
            LY+   S+ +  R+ V+  + DGF I+E+DL+ R  G+I G++QSG   F++A P    
Sbjct: 570 -LYNKSESEIASMRMKVMVESTDGFYISEKDLELRGSGDIFGVRQSGFMGFIMANPIKDK 628

Query: 654 SLLEIARKDAKHILTQDPDL 673
            +L+ A  +AK+I   DPD 
Sbjct: 629 MILKYAALEAKNIYRDDPDF 648


>gi|119717509|ref|YP_924474.1| ATP-dependent DNA helicase RecG [Nocardioides sp. JS614]
 gi|119538170|gb|ABL82787.1| ATP-dependent DNA helicase RecG [Nocardioides sp. JS614]
          Length = 750

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 230/701 (32%), Positives = 368/701 (52%), Gaps = 72/701 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR----PYKILLNDGT 98
           DLL + P  ++      +I E+ E  ++T+ G I+       + RR     Y++ +   T
Sbjct: 33  DLLRHFPRRYVKTGELTRIDELHEGELLTVVGQITSSKLNTYEDRRTHRPAYRVDVTVRT 92

Query: 99  -GEITLLFFYRKTEMLKNVFFE-----GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN 152
            G    +  + KT  +     E     GR+    GK+   +    + HP  +   + D +
Sbjct: 93  DGPSFRISMFAKTRHMGEWQQEKRMPVGRRGIFVGKVSSFRGNWQLTHPQVVLFGTPDED 152

Query: 153 FPLIE--------AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
              +          +Y L  G+     ++ +  AL+ +  +P+ +  ++ ++     +  
Sbjct: 153 AAQLSLDAIGELYPIYPLTKGVDSWDLQRAVAFALTMVDDVPDLVPPEVRERHGLLDVRT 212

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV--EGKIA 262
           A   IHNP    D    + A+ R  ++E L  Q+ L    ++  +E+G       +G + 
Sbjct: 213 ALRHIHNP---DDRAQITSAQRRFRFEEALVTQLVLARR-RRAVRELGARARTGEDGGLL 268

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
                 +PF  T  Q     +I  D++Q + M R+LQG+VGSGKTLVAL AM   V++GG
Sbjct: 269 AAFDARLPFELTAGQREIGAEIEADLAQPHPMNRLLQGEVGSGKTLVALRAMLRVVDSGG 328

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQII-----------VEIITGNMPQAHRRKALERI 371
           QA ++AP  +LAQQH+  I     +               VE++TG+M +A R   + R+
Sbjct: 329 QAALLAPTEVLAQQHHRSITAMLGDLAGGGMLGGAAEATNVELLTGSMTKAQRTAPMSRL 388

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATP 430
           A G+A I+IGTHAL ++ + +  L LV+VDEQHRFGV+QR  LT KA T PHVL+MTATP
Sbjct: 389 ASGEAGIVIGTHALLEEKVAFADLGLVVVDEQHRFGVEQRAALTDKAGTPPHVLVMTATP 448

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAY 486
           IPRT+ +T  GD++ S +TE PAGR PI+T ++P+      +  V ER++  + +G++AY
Sbjct: 449 IPRTVAMTVFGDLETSTLTELPAGRAPIQTNVVPLAEQPHWLPRVWERVREEVDKGRQAY 508

Query: 487 WICPQI----EEKKESNFRSVV----ERFNSLH-----------EHFTSSIAI------- 520
            +CP+I     E+ E++ +S+     E  N L            E   + +A        
Sbjct: 509 VVCPRITGDESEQGETDAQSIYVDLDEDGNILAPPGASVTLNAVEEVAAQLADGPLAGLR 568

Query: 521 ---IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              +HG+M+  DK++VM +F  G   +L++TTVIEVG+DV +A+ +++ +A+ FG++QLH
Sbjct: 569 VERLHGKMAPEDKDAVMRAFAAGGVDVLVSTTVIEVGVDVANATAMVLLDADRFGVSQLH 628

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG     C+L+        +  RL+ +  T DGF ++  DL+QR+EG++LG  
Sbjct: 629 QLRGRVGRGGHPGICLLVSWAEQETPARERLAAVAATTDGFELSRVDLEQRREGDVLGRS 688

Query: 638 QSGMPKFLIAQPELHD--SLLEIARKDAKHILTQDPDLTSV 676
           QSG    L     L D  +++E AR  A  +L  DPDL   
Sbjct: 689 QSGYRSSLHDLRVLRDEKTIVE-ARGAALDLLEADPDLAGT 728


>gi|297202618|ref|ZP_06920015.1| ATP-dependent DNA helicase RecG [Streptomyces sviceus ATCC 29083]
 gi|197713193|gb|EDY57227.1| ATP-dependent DNA helicase RecG [Streptomyces sviceus ATCC 29083]
          Length = 742

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 233/759 (30%), Positives = 380/759 (50%), Gaps = 82/759 (10%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P+   PL  PL     +G   +  +++ +   +       DLL ++P  + +R     ++
Sbjct: 5   PALEEPLEQPLKAV--LGPATAKVMAEHLGLHSVG-----DLLHHYPRRYEERGQLTHLA 57

Query: 63  EISEERIVTITGYISQ---HSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKN 115
           ++  +  VT+   ++    H+    +  R      ++ + DG+G + L+FF         
Sbjct: 58  DLPMDEHVTVVAQVADARLHTFASAKAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHK 117

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN---------------FPLIEAVY 160
               G +    GK+     R+ + HP Y      D                 +P    + 
Sbjct: 118 ELLPGTRALFAGKVSLFNRRLQLAHPAYELLRGADDEAAETVESWAGALIPLYPATAKLE 177

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
           S   G ++        EA+  LP       + L + +    + EA   IH P    D   
Sbjct: 178 SWKIGKAIQTVLPSAQEAIDPLP-------QSLREGRGLLPLPEALLKIHRPHTKADI-- 228

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQES 279
            + A  RL +DE    Q+AL   R+   +   +P       +       +PF+ T  Q+ 
Sbjct: 229 -ADAHARLKWDEAFVLQVALARRRRADAQLPAVPRKPAPDGLLSAFDDRLPFTLTDGQQK 287

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             K+I  D++  + M R+LQG+VGSGKTLVAL AM A V+AGGQA ++AP  +LAQQH+ 
Sbjct: 288 VSKEIFDDLATDHPMHRLLQGEVGSGKTLVALRAMLAVVDAGGQAAMLAPTEVLAQQHHR 347

Query: 340 FIKKYT-------------QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            I +               Q T+++  ++TG+M  A RR+A+  +  G+A I+IGTHAL 
Sbjct: 348 SIVEMMGELAEGGMLGGSEQGTKVV--LLTGSMGTAARRQAMLDLVTGEAGIVIGTHALI 405

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +D +Q++ L LV+VDEQHRFGV+QR  L  K    PH+L+MTATPIPRT+ +T  GD++ 
Sbjct: 406 EDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLET 465

Query: 446 SKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           S + + PAGR PI + ++P       +    ER++  +  G +AY +CP+I ++++   +
Sbjct: 466 SVLDQLPAGRSPIASHVVPAADKPHFLTRAWERVREEVENGHQAYVVCPRIGDEEDDPKK 525

Query: 502 SVVERFNSLHEHFTSSIAII-------------------HGRMSDIDKESVMDSFKNGTC 542
           S  ++           +A++                   HGRM   DK++VM  F  G  
Sbjct: 526 SAKQKSAEDEAEKRPPLAVLDIADQLVKGPLSGLRVEVLHGRMHPDDKDAVMRRFAAGET 585

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG     C+L+   P + 
Sbjct: 586 HVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEMPEAS 645

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARK 661
            +  RL+ + +T DGF ++  DL+QR+EG++LG  QSG    L     + D  ++  AR+
Sbjct: 646 PARQRLNAVASTLDGFELSRIDLEQRREGDVLGQAQSGARTSLRVLAVIEDEEIIAEARQ 705

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +A  ++  DP+LT + G  +R  L      E  Q++  G
Sbjct: 706 EATAVVEADPELTELPG--LRTALDALVDEEREQYLEKG 742


>gi|187931154|ref|YP_001891138.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712063|gb|ACD30360.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 679

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 226/646 (34%), Positives = 363/646 (56%), Gaps = 36/646 (5%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
           F GVG+     L+K  N  + N     DLL   P  + D      I+ +       I G 
Sbjct: 6   FNGVGEATIKALAKY-NIHDPN-----DLLTIFPKDYKDTRVITPINHLVAGNRSLIQGR 59

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           ++ + +++   ++  +  +ND TG  +++ F      L  +  +   +   GK++     
Sbjct: 60  VT-NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILEKSEYVRCYGKVE-FSLS 116

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-VDLFKKIIVEALSRLPV-------LPE 187
             MVHP +   N+ +          +L  G S V  FKKI    +S++ +       +  
Sbjct: 117 PQMVHPEWATVNNGEC---------ALKQGFSAVYRFKKIPDRLISKMILKMLQDNRVEN 167

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            I   LL++ +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K  
Sbjct: 168 IIPSQLLRRFNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNT 227

Query: 248 KKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            K    P     KI Q +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GK
Sbjct: 228 VKAQA-PQLFLTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGK 286

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA IA  AAV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R+
Sbjct: 287 TIVATIAAYAAVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRE 346

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------ 420
           +L++I   +  +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K+++      
Sbjct: 347 SLDKIKDQKDCVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLT 406

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH L+++ATPIPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  + 
Sbjct: 407 PHQLIISATPIPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVL 466

Query: 481 EGKKAYWICPQIEEKKESNF-RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
            G++ YW+CP +EE +  +F + V   +  L E     ++ +++G M   DK   M +FK
Sbjct: 467 RGEQVYWVCPLVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFK 526

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                +L+ATTVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY  
Sbjct: 527 AKKYAVLVATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSD 586

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
            +S+    RLS+++ ++DGF +AE+DL+ R  G+I+G +QSG+  F
Sbjct: 587 KISEVGKRRLSLVRESQDGFYLAEKDLEIRGAGDIIGKEQSGVSTF 632


>gi|291166899|gb|EFE28945.1| ATP-dependent DNA helicase RecG [Filifactor alocis ATCC 35896]
          Length = 684

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 228/661 (34%), Positives = 360/661 (54%), Gaps = 23/661 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           + + +G+G K +  L ++       ET   D L Y P  + DR     + EI  E  V  
Sbjct: 7   MESIKGIGSKKATLLKQL-----GIET-IEDFLLYFPFRYEDRATHVPLDEIRTEDKVFS 60

Query: 73  TGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           +G I    SFQ  + +P     KI +    G+  ++  +    + K  +  G  I   G 
Sbjct: 61  SGRIV---SFQTSRPKPKMTITKITVCSELGKEGVITIFNNPYLHKQ-YSVGDCIQFYG- 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           + ++K R I+     I    ++V    I  +Y L  GLS       +   L  L  L E 
Sbjct: 116 MCQIKGRKILFSSPEIEPFGKNVLMNYIYPIYPLVKGLSNHDMVNAMRTILQSLGELEEV 175

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
             + LLQK+S      A   IH P      +    AR RL Y E    Q+ LL +R + +
Sbjct: 176 FPESLLQKRSLAPFDFAVRNIHFPHSVSALK---SARYRLIYQEFFMLQMHLLNLRNKDE 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
                 +  E + A+     IPF  T +Q+  ++++ +D+ Q+  M R++QGDVGSGKT+
Sbjct: 233 TARSFVLK-ELEQAKSFFDKIPFELTNAQKRVLQEMTEDLKQEKPMQRLVQGDVGSGKTV 291

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           +A  A       G Q V+MAP  +LA+QHYE  KK  + + + +  ++G++ +  + +  
Sbjct: 292 LAWYATYLTFLNGYQTVLMAPTEVLAKQHYEGAKKLFEGSGVRIAFLSGSISKKKKEEIY 351

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAPHVLLMT 427
           + I+ G   ++IGTHA+ Q+ + + KL L I DEQHRFGV+QR KL+ Q   +PH+L+MT
Sbjct: 352 QGISDGDYDLVIGTHAVIQEGVHFSKLALAITDEQHRFGVKQRGKLSKQYEISPHILVMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL L   GD+DIS I E P GRK I+T  I   +   V  +    L +G++ Y 
Sbjct: 412 ATPIPRTLTLVLQGDLDISIIDELPKGRKQIETYAIEQKKAHMVYGQCIGELQKGRQLYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP ++E +  + +S  E + SL     SS  + ++HG+M   +K  +M  ++     +L
Sbjct: 472 VCPLVKESEVLDLKSAEELYESLKTGVFSSFRVGLLHGKMKSSEKTEMMRQYQEHEIDVL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVGI+V +A+++IIE+A+ FGL+QLHQLRGRVGRG + S C L+Y     + + 
Sbjct: 532 VSTTVIEVGINVPNATVMIIEDAQRFGLSQLHQLRGRVGRGSDQSYCYLIYR-GYDQVAL 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ V+ +T DGF+IAE+DL+ R  GE+LG+KQ G+P+  +A    H  ++  +++D + 
Sbjct: 591 KRMQVMTSTNDGFVIAEKDLEIRGPGEVLGVKQHGIPELKLADFTKHQKVMFASKEDIQE 650

Query: 666 I 666
           +
Sbjct: 651 L 651


>gi|294815344|ref|ZP_06773987.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC
           27064]
 gi|326443698|ref|ZP_08218432.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC
           27064]
 gi|294327943|gb|EFG09586.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC
           27064]
          Length = 784

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 235/745 (31%), Positives = 376/745 (50%), Gaps = 95/745 (12%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           +PL  PL+  R +G   +  L + +           DLL ++P  + +R    +++E+  
Sbjct: 42  DPLDEPLT--RTLGPASAKVLGEQLGLRTVG-----DLLHHYPRRYEERGRLTRLAELPL 94

Query: 67  ERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           +  VT+   ++     +F   + +  ++ + DG+G + L+FF R           G +  
Sbjct: 95  DEEVTVVAQVADARVHTFNGGRGKRLEVTITDGSGRLQLVFFGRGVHKPHQELLPGTRAM 154

Query: 125 VTGKIKKLKNRIIMVHPHYI----------------------FHNSQDVNFPLIEAVYSL 162
             G++     ++ + HP Y                       +  +    +P  + + S 
Sbjct: 155 FAGRVSVFNRKLQLAHPSYAKLGTGDGADGGGGHDDGTAVDSWAGALIPIYPACKGMESW 214

Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222
               +VD       EA   LP         L + + F  + EA   +H PR   D E   
Sbjct: 215 KIAKAVDAVLPRRTEATDPLP-------PALREGRGFVPLPEALLKVHRPRTKADIEA-- 265

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPI----NVEGKIAQKILRNIPFSPTKSQE 278
            AR+RL +DE    Q+AL   R++F  +  +P        G I       +PF+ T+ Q 
Sbjct: 266 -ARQRLKWDEAFVLQVAL--ARRRFA-DTQLPAVARRPAPGGILDAFDARLPFTLTEGQR 321

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
               +I  D++ ++ M R+LQG+VGSGKTLVAL AM A V+AGGQA ++AP  +LAQQH+
Sbjct: 322 KVTGEIFGDLATEHPMHRLLQGEVGSGKTLVALRAMLAVVDAGGQAAMLAPTEVLAQQHH 381

Query: 339 EFIKKYTQN-------------TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
             + +   +             T+++V  +TG+M  A RR AL  +  G+A I+IGTHAL
Sbjct: 382 RSVVEMMGDLADGGTLGAPDGATKVVV--LTGSMGAAARRAALLDLVTGEAGIVIGTHAL 439

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDID 444
            +D +Q++ L LV+VDEQHRFGV+QR  L  K    PH+L+MTATPIPRT+ +T  GD++
Sbjct: 440 IEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLE 499

Query: 445 ISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            S + + PAGR PI + ++P       +    ER++  + +G +AY +CP+I +++E   
Sbjct: 500 TSVLDQLPAGRSPIASHVVPARDKPHFLARAWERVREEVGKGHQAYVVCPRIGDEEEGTG 559

Query: 501 R------------------------SVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVM 534
                                    +V+E    L     +   I ++HGRM   DK++VM
Sbjct: 560 AAAKSGRKAADEEAQAADAEKRPPLAVLEIAEELERGPLAGLRIGVLHGRMPPEDKDAVM 619

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG     C+L
Sbjct: 620 RRFTAGEVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLL 679

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD- 653
           +   P +  +  RL  +  T DGF ++  DL+QR+EG++LG  QSG    L     + D 
Sbjct: 680 VTEMPAASPARARLGAVAATLDGFELSRIDLEQRREGDVLGQAQSGARSSLRMLAVIEDE 739

Query: 654 SLLEIARKDAKHILTQDPDLTSVRG 678
            ++  AR++A   +  DP+L    G
Sbjct: 740 EVIAAAREEAVRTVRADPELEHTPG 764


>gi|225389053|ref|ZP_03758777.1| hypothetical protein CLOSTASPAR_02798 [Clostridium asparagiforme
           DSM 15981]
 gi|225044875|gb|EEG55121.1| hypothetical protein CLOSTASPAR_02798 [Clostridium asparagiforme
           DSM 15981]
          Length = 685

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 218/669 (32%), Positives = 360/669 (53%), Gaps = 21/669 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERIV 70
           P+S+ +G+G K +    K+            DLL Y+P ++ D    P  I ++ E  ++
Sbjct: 6   PISSLKGIGDKTAALFEKL------GVYTVADLLAYYPRAY-DAFEEPVAIGQLKENSVM 58

Query: 71  TITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            +   + +H+   +    +   + + D TG + + ++      ++     G      G++
Sbjct: 59  AVQSALVKHADLLRFNHMQVVSLQIKDLTGSLQVSWY--NMPYMRANLKPGEMYVFRGRV 116

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            + + R+IM  P      +       ++ +Y    GL      K   +AL    +  E++
Sbjct: 117 VRKRGRLIMEQPEVFTPQAYGELVHSMQPIYGQTRGLGNKAIVKAQTQALQLRQMEREYM 176

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFK 248
              L ++     I  A   IH P    +  +   AR+RL +DE     + +  L  K+  
Sbjct: 177 PATLRKRYELAEINYAVEHIHFPADQSELLY---ARKRLVFDEFFLFLVGVRKLKEKRAD 233

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K     +    ++A +    +P+  T +QE  ++++  D+S    M R++QGDVGSGKT+
Sbjct: 234 KRSPYVMEFREEVA-RFQEALPYRLTGAQERTLREVFDDLSGGLVMNRLIQGDVGSGKTI 292

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE--IITGNMPQAHRRK 366
           +A++A+  A   G Q  +MAP  +LA+QH+E I +  +  +I  +  ++TG+M    +R 
Sbjct: 293 IAVLALLMAACNGYQGALMAPTEVLAKQHFESITQLFETYKIEKKPVLVTGSMTAKEKRL 352

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
           A E+I   +A I+IGTHAL Q+ + Y  L LVI DEQHRFGV QR  L+ K   PHVL+M
Sbjct: 353 AYEQIERHEADIVIGTHALIQEKVHYDNLALVITDEQHRFGVGQRELLSSKGGDPHVLVM 412

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL +   GD+DIS I E P GR+PIK  ++      +    +   + EG++AY
Sbjct: 413 SATPIPRTLAIILYGDLDISVIDELPQGRQPIKNCVVNTGYRPKAYSFIARQVEEGRQAY 472

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKL 544
            ICP +EE +     +V++    L +   +S+ +  +HG+M   +K  +M+ F  G  ++
Sbjct: 473 VICPMVEESEMIEAENVLDYAKKLRKELPASVTVEYLHGKMKGREKNRIMERFAAGEIQV 532

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG   S CI++ +    + +
Sbjct: 533 LVSTTVIEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGSSQSYCIMV-NCSDEEGT 591

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL +L  + DGF IA EDLK R  G+I G++QSG  +F +A      ++L+   ++  
Sbjct: 592 LERLDILNRSNDGFYIASEDLKLRGPGDIFGMRQSGDMEFKLADIFTDANILKSVSEEVN 651

Query: 665 HILTQDPDL 673
            +L  DP+L
Sbjct: 652 RLLDGDPEL 660


>gi|184155717|ref|YP_001844057.1| ATP-dependent DNA helicase RecG [Lactobacillus fermentum IFO 3956]
 gi|183227061|dbj|BAG27577.1| ATP-dependent DNA helicase RecG [Lactobacillus fermentum IFO 3956]
          Length = 678

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 220/632 (34%), Positives = 348/632 (55%), Gaps = 20/632 (3%)

Query: 43  DLLFYHPSSFIDRHYRP-KISEISEERIVTITGYISQH---SSFQLQKRRPYKILLNDGT 98
           DLL ++PS + D  + P  ++   +++ VT+ G +      S +  ++ R    L+    
Sbjct: 32  DLLTHYPSRYDD--FAPTDLTVAKDKQKVTVKGTVVSEPLMSRYGYRRSRMSFRLVVGQA 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
           G + +++F +    LK        +TV G     + +I+          + D     + A
Sbjct: 90  GVVNVVYFNQP--YLKQQVEPNHDVTVLGTWDAPRQQILGTK-----LVAADSKAEAVGA 142

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            Y     +     +K+I +A  +   V+   +   L Q+       E    +H P    D
Sbjct: 143 TYPANKHVRQATLRKLIRQAFDQYQNVIATLLPISLRQRYQLMERREMIKQMHFP---TD 199

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
                 A+   A++E    ++ L  +R+  +KE G+ I       +  ++ IPF  T +Q
Sbjct: 200 TTMAEAAKRTAAFEEFFLFELRLQAIRRANRKEEGLQILYNNAELRDFIKTIPFELTAAQ 259

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +  + +I +D+    +M R+LQGDVGSGKT+VA IA+ AAV AG Q  +MAP  ILA QH
Sbjct: 260 KRVVNEICRDLRAPYQMNRLLQGDVGSGKTIVAAIAVMAAVLAGYQVALMAPTEILAAQH 319

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E + K    T + V ++TG +      +  + I  G  ++I+GTHAL Q+ + Y  L L
Sbjct: 320 AEKLAKVFSGTHVEVALLTGALTAKQHDQLAKAIKAGDVNLIVGTHALIQNGVDYANLGL 379

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI+DEQHRFGV QR +L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR+P
Sbjct: 380 VIIDEQHRFGVNQRQQLREKGEHPDVLAMTATPIPRTLAITAYGEMDVSVIDELPAGRQP 439

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--T 515
           IKT  +  N+    ++ L   L  G +AY + P IEE +  + ++  + +    EHF  T
Sbjct: 440 IKTTWLKGNQGQSALDFLDQQLRAGAQAYVVSPLIEESENLDVKNATDLYARFKEHFGPT 499

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HGRM++ +K  VM  F+ G  ++++ATTVIEVG+D  +A++++I +A+ FGLAQ
Sbjct: 500 YQVGLLHGRMNNDEKAVVMKDFQAGKVQVMVATTVIEVGVDNPNATVMLIYDADRFGLAQ 559

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG+  S C+L+  P   +    R+  +  T DGF +A++DL+ R  G++LG
Sbjct: 560 LHQLRGRVGRGKRQSYCLLVADPKTDEGK-ARMETMVATTDGFEVAQKDLELRGAGDVLG 618

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            +QSGMP F +  P     +L+IAR DA ++L
Sbjct: 619 DRQSGMPDFKVGDPVGDLKMLQIARADAGNLL 650


>gi|145593830|ref|YP_001158127.1| ATP-dependent DNA helicase RecG [Salinispora tropica CNB-440]
 gi|145303167|gb|ABP53749.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 733

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 221/705 (31%), Positives = 361/705 (51%), Gaps = 62/705 (8%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           VG K +  L+  ++   A      DLL++ P  + +R     I  +     VT+   + +
Sbjct: 16  VGAKTARALATHLDLHTAG-----DLLYHVPRRYDERGEHTDIRSLDVGEQVTVLAQVQR 70

Query: 79  HSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
            +   +++RR    ++ + DG+G    L F+      +     GR     GK+ + ++R 
Sbjct: 71  TAVRPMRQRRGNLLEVTVGDGSGGALTLTFFGNQVWRERDLRPGRWGLFAGKVTEFRSRR 130

Query: 137 IMVHPHYIFHNSQDVN---------------FPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
            +  P Y+   + D                  P+  A  ++PT + +    +++++ +  
Sbjct: 131 QLNGPEYVLLGAGDEGEVAASEEVEEFAGALIPVYPAAAAVPTWV-IARCVRVVLDTVD- 188

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P  P  +   +   ++   +  A   +H P      E    AR RL +DE  A Q+ L+
Sbjct: 189 PPADP--VPATVRTTRNLVGLGAALREVHRPSSK---EALYRARRRLKWDEAFAVQLTLV 243

Query: 242 LMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             ++Q       P  V +G +       +P+  T  Q     +I  D++  + M R+LQG
Sbjct: 244 RRKRQAADRPARPRPVVDGGLRDAFDARLPYQLTAGQREVGTEIATDLASAHPMHRLLQG 303

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQ 349
           +VGSGKT+VAL AM   V+AGGQA ++AP  +LA QHY  I                   
Sbjct: 304 EVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHYRGILDLLGSLGRAGELDAAEHA 363

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
             VE++TG++    RR+AL  +  G A I++GTHAL  + + +  L LV+VDEQHRFGV+
Sbjct: 364 TRVELVTGSLGAVARRRALGEVRSGVAGIVLGTHALLYEGVDFADLGLVVVDEQHRFGVE 423

Query: 410 QRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           QR  L  KA   PHVL+MTATPIPRT+ +T  GD+++S +++ P GR PI + ++P    
Sbjct: 424 QRDALRAKADQPPHVLVMTATPIPRTVAMTVYGDLEVSTLSQLPRGRSPIASHVVPAAEK 483

Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS------- 517
              +D    RL+  ++ G +AY +CP+I +   S+  +  E   +       +       
Sbjct: 484 PAFLDRAWRRLREEVAAGHQAYVVCPRIGDGPSSDEEAAGEDDTTRRPPLAVTEVAPLLA 543

Query: 518 --------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                   I ++HGR+   +K++VM SF  G   +L+ATTV+EVG+DV +A+++I+ +A+
Sbjct: 544 EGPLHGLRIGVLHGRLPAEEKDAVMRSFAAGDLDVLVATTVVEVGVDVPNATVMIVLDAD 603

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            FG++QLHQLRGRVGRG     C+L+       ++  RL  + +T DGF +AE DL+QR+
Sbjct: 604 RFGVSQLHQLRGRVGRGSAAGLCLLVTEAMEGSSARERLDAVGSTTDGFTLAELDLEQRR 663

Query: 630 EGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDL 673
           EG++LG  QSG    L     L D+ L+  AR +A  ++ +DP+L
Sbjct: 664 EGDVLGATQSGRRSHLRLLSLLRDADLIRDARTEAIGLVEEDPEL 708


>gi|227890267|ref|ZP_04008072.1| DNA helicase RecG [Lactobacillus johnsonii ATCC 33200]
 gi|227849081|gb|EEJ59167.1| DNA helicase RecG [Lactobacillus johnsonii ATCC 33200]
          Length = 679

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 220/675 (32%), Positives = 371/675 (54%), Gaps = 30/675 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           LF P++  +GVG K +  L+ + IN          DLLFY P  + D    P + +I + 
Sbjct: 8   LFEPVTELKGVGAKTATALASLGINT-------IYDLLFYFPFRYDDLEIIP-LDQIEDG 59

Query: 68  RIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           + V + G +      S F  +K R  +K+ ++    +I ++ F+ +   LKN    G+++
Sbjct: 60  QKVLLKGMVVTDPFVSRFGYRKTRLSFKMKIDH---DIIMVNFFNQP-WLKNKVESGKEV 115

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182
            V GK +  +  +       +    +D  F     +YS+   L  +  +K+I  AL   +
Sbjct: 116 AVYGKYQVARQSL---SGFKLVAEKKDSGFA---PIYSVNRHLKQNKLQKLIDLALEETI 169

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E I   + +K    S       +H+P+   +      AR    + +    Q+ L  
Sbjct: 170 NEVGETIPASIREKYRLLSDRVLVEKMHHPKNENE---AKIARRSAIFRDFFLFQMQLAQ 226

Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +  Q  ++  G+    +    ++++  IPF  +  Q+  + +I  D+  K +M R+LQGD
Sbjct: 227 LLSQRNEDAPGVEKKYDLAAVKELIEEIPFELSDDQKKVVNEIFADLHSKRQMRRLLQGD 286

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA+ A+ AAV AG QA +M P  ILAQQH+  I +  +   + V ++T +   
Sbjct: 287 VGSGKTVVAVFAIYAAVTAGYQAALMVPTEILAQQHFAKIDELLKPLGVRVALLTRDTKD 346

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +++    +A G  +++IGTHAL Q  + +  L LVI+DEQHRFGV QR  L +K  AP
Sbjct: 347 LEKKEIYRELADGTINVVIGTHALIQKDVHFKNLGLVIIDEQHRFGVNQRNTLIKKGEAP 406

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L MTATPIPRTL LT  GD+ +S+I   P GRKP+ +     +++ EV+  ++  L +
Sbjct: 407 DILAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLREVLGLMRSQLDK 466

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G + Y + P I E ++S+ ++  +    +  +F   ++ ++HG+M    K  +MDSF  G
Sbjct: 467 GFQIYVVTPLISESEKSDLKNAEDLQAKIAHYFKDENVVLLHGQMKGDQKNEIMDSFAAG 526

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ +  P  
Sbjct: 527 KINILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK- 585

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    R++++ +T +GF +AEEDLK R EG++ G  QSG+P+F +       + L  A+
Sbjct: 586 TEIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNALVTAQ 645

Query: 661 KDAKHILTQDPDLTS 675
           K+A++++  DP L +
Sbjct: 646 KEARNLIKSDPALAN 660


>gi|309810312|ref|ZP_07704150.1| putative ATP-dependent DNA helicase RecG [Dermacoccus sp. Ellin185]
 gi|308435740|gb|EFP59534.1| putative ATP-dependent DNA helicase RecG [Dermacoccus sp. Ellin185]
          Length = 729

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 222/684 (32%), Positives = 357/684 (52%), Gaps = 62/684 (9%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR---PYKILLNDGTG 99
           DLL Y P  +ID H      E      V +T  +   +  ++Q R+      ++++D   
Sbjct: 32  DLLDYFPRRYIDAHAGSTFGEFELGEHVVLTARVETMTQRRMQTRKGSMANAVIVDDEGR 91

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF------ 153
              + FF  +     +V   G++   +G++     ++ + HP Y   +  D++       
Sbjct: 92  RAAVTFFSAQPHY--SVLRPGKRALFSGQLGLFNKQLQLSHPQYTLMDDADMSVYPGSVV 149

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
           P+ + V  + T L++ L    +++AL  +P   + +++ L  +    +   A+  +H P 
Sbjct: 150 PVYKQVEKI-TNLNLTLSISTVLDALGEIP---DPLDEPLRARHGLVTTTRAYRGLHLPA 205

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFS 272
              D +     RERL +DE    QI L   R + + E   P +   G + ++    +PF 
Sbjct: 206 SMADVQ---AGRERLRFDEAFTTQIVLAQRRHEARSEPSTPRVAKPGGLLERFDATLPFE 262

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T+ Q    + I +D+++   M R+LQG+VGSGKTLVAL AM A V++G QA ++AP  +
Sbjct: 263 LTEGQREVGEQIARDLAEPVAMHRLLQGEVGSGKTLVALRAMLAVVDSGAQAALLAPTEV 322

Query: 333 LAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           LA QH   ++               +    V ++TG+M  + R +AL  I  G+A I+IG
Sbjct: 323 LAAQHAASMRAMLGPLAERGRLGGADDGTRVTLLTGSMSASARTQALLDIVSGEAGIVIG 382

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSL 440
           THAL Q  +++  L LV+VDEQHRFGV+QR  L+ KA   PHVL+MTATPIPRT+ +T+ 
Sbjct: 383 THALLQKHVEFADLGLVVVDEQHRFGVEQRAALSSKAHRPPHVLVMTATPIPRTVAMTAF 442

Query: 441 GDIDISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           GD+D+S + + P GR PI + ++P    + ++ V ER+    + G++ Y +  +I +  E
Sbjct: 443 GDLDVSTLRQLPRGRAPIVSHVVPTHVASWMNRVWERIAEECAAGRQVYVVAGRIGDGSE 502

Query: 498 S------------------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
                                        +++    L       I ++HGR+   +K+ V
Sbjct: 503 PVAPGLVDGPDAHGAGEGDAAARPIGVVDLIDEMRRLPALAGLRIGLMHGRLPAEEKDDV 562

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F  G   +L+ATTVIEVG+DV +AS+I+I +A+ FGL+QLHQLRGRVGRGE    C+
Sbjct: 563 MRRFGAGEVDVLVATTVIEVGVDVPNASMIVIVDADRFGLSQLHQLRGRVGRGEHGGLCL 622

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL--IAQPEL 651
           L+     + ++  RL  +  T DGF IA+ DL  R+EG++LG  QSG    L  +   + 
Sbjct: 623 LVTRNE-NPDTLERLRRVAETNDGFAIADLDLDLRREGDVLGAAQSGRRSSLDWLELTKA 681

Query: 652 HD-SLLEIARKDAKHILTQDPDLT 674
            D +++E AR +A  I+  DP LT
Sbjct: 682 SDLAVIEAARTEAAAIVEADPSLT 705


>gi|257054977|ref|YP_003132809.1| ATP-dependent DNA helicase RecG [Saccharomonospora viridis DSM
           43017]
 gi|256584849|gb|ACU95982.1| ATP-dependent DNA helicase RecG [Saccharomonospora viridis DSM
           43017]
          Length = 722

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 222/682 (32%), Positives = 359/682 (52%), Gaps = 56/682 (8%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100
           DLL ++P  +  R     I+ +     VT+   +   +   ++ R+    ++ + DG   
Sbjct: 31  DLLRHYPRRYARRGELTDIAGLEIGEHVTVLARVEHVTKKPMRSRKGSILEVTITDGQRR 90

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-------- 152
           ++  FF  +T   +     GR     GK+   +  + + +P Y   ++   +        
Sbjct: 91  LSCAFFGNQTWRERE-LRPGRTGLFAGKVTMFRRTLQLANPEYELIDTDSTDPADGLSTV 149

Query: 153 -------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAE 204
                   P+  A   LP+       ++ + E L   P  LPEW+  +       P++ E
Sbjct: 150 DDFLSQIIPVYPAAQGLPSWRIAKAVRQTL-ELLDEEPDPLPEWLRTE----HRLPTLFE 204

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIA 262
           A + IH PR   D +    AR RL +DE LA Q+ +L  R+        P      G IA
Sbjct: 205 ALHDIHRPRSDADLQ---AARTRLKWDEALAVQL-VLAQRRHSSGARPAPECPPRRGGIA 260

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +     +PF  T+ Q    + I  D++ K+ M R+LQG+VGSGKT+VAL AM   V+AG 
Sbjct: 261 EAFDERLPFRLTEGQREVGEAISVDLAGKHPMNRLLQGEVGSGKTIVALRAMLQVVDAGR 320

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-----------TQIIVEIITGNMPQAHRRKALERI 371
           QA ++AP  +LA QH   +++   +               V ++TG++P   R++AL   
Sbjct: 321 QAALLAPTEVLAAQHARSLREMLGDLARAGELGAPEVATRVTLLTGSLPARERKQALLDA 380

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTA 428
           A G A I++GTHAL  + + +  L  V++DEQHRFGV+QR  L  +    T+PHVL+MTA
Sbjct: 381 ASGAAGIVVGTHALLSEHVSFADLAFVVIDEQHRFGVEQRDALRTRGSEDTSPHVLVMTA 440

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKK 484
           TPIPRT+ +T  GD++ S + + P+GR PI T ++P       +D   +RL+  + +G +
Sbjct: 441 TPIPRTVAMTVYGDLETSSLRQLPSGRSPISTTVVPAAEKPAWLDRAWQRLREEVDKGHQ 500

Query: 485 AYWICPQI-----EEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSF 537
           AY +CP+I      +K E    +V++    L     +   I ++HGR+   +K++VM +F
Sbjct: 501 AYVVCPRIGDEPPSDKTERPPIAVLDLAPELESGVLAGLRIGVLHGRLPGDEKDAVMRAF 560

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G   +L+ATTV+EVG++V +A+++II +A+ FG++QLHQLRGRVGRG+    C+L+  
Sbjct: 561 AAGELDVLVATTVVEVGVNVPNATLMIIMDADRFGVSQLHQLRGRVGRGDVPGLCLLVTE 620

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLL 656
                 +  RL+ +++T DGF +++ DL+ R+EG+ILG  QSG    L     L D  L+
Sbjct: 621 AVDGTAARARLAAVESTTDGFELSKLDLELRREGDILGAAQSGRRSGLKLLSLLRDEDLI 680

Query: 657 EIARKDAKHILTQDPDLTSVRG 678
             +R+ A+ I+  DP LT   G
Sbjct: 681 ATSRRAAQRIVAADPGLTEYPG 702


>gi|116329238|ref|YP_798958.1| ATP-dependent DNA helicase, recG-related [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116121982|gb|ABJ80025.1| ATP-dependent DNA helicase, recG-related [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 724

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 229/706 (32%), Positives = 377/706 (53%), Gaps = 58/706 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P++  +GVG   +  L+ I            DLL + P  ++D      +   + 
Sbjct: 15  NELLLPVTVIKGVGSSKAAALASI------GIHTLQDLLNFFPRRYLDCSLTDNVLLKTG 68

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           E +  I   +  + +   + R  + +       E   + F+R     + +F  G  + VT
Sbjct: 69  ETVTLIVEVVDAYLAHGKKSR--FVVGAKTKNNERISIVFFRGVGFFQKIFQPGTTLVVT 126

Query: 127 GKIKKLKNRIIMVHPHY-IFHN----SQDVN---------------------------FP 154
           G+++  +    ++HP Y I  N    S  +N                            P
Sbjct: 127 GRLEYFRG-FQLIHPDYEILANAIKPSYTINSTNLDKKSRQQEPELAELPEMIHAGRIIP 185

Query: 155 LIEAVYSLPT-GLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
           L  +   L + GL    F+KI+  AL RL   + E +  +++++++     E++  IH P
Sbjct: 186 LYSSGEVLKSQGLDSRGFRKILYLALERLKGGISEILPNEIVKRRNLIPREESYREIHFP 245

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE----IGIPINVEGKIAQKILRN 268
               D      A+ RL Y+EL      LL+  K+ ++E    +  P+  + + A  + +N
Sbjct: 246 ---TDEVSLDAAKYRLKYEELFY--FNLLIEHKKREREKIKRVLWPLP-KSETADSVRKN 299

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           + F  T+ Q SA++ I +   +   +  +LQGDVGSGKTLV+L+     ++   Q  ++A
Sbjct: 300 LLFQLTEDQSSALRKIEELTKRDQPIAVLLQGDVGSGKTLVSLLTALRYMDNQIQVCMVA 359

Query: 329 PIGILAQQHYEFIKKYTQNTQII-VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P  ILA+QHY+ I  +  N   + +E++ G  P+ +R + L RI  G    +IGTH++FQ
Sbjct: 360 PTEILARQHYQTILSFLGNMPFLGIELLVGKEPKKNRYEKLYRIKKGDTLFVIGTHSVFQ 419

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + + + +L LVI+DEQH+FGV QR  L  K   P +L MTATPIPRTL LT  GD+D+  
Sbjct: 420 EDVLFSELGLVIIDEQHKFGVDQRETLRSKGKNPDILAMTATPIPRTLCLTLYGDLDLLT 479

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I  KP GR PI+T     NR + V + ++  +S G++ Y + P +EE ++ + +S +  +
Sbjct: 480 IKSKPKGRMPIQTKWFQENRREGVYKSIRKYVSSGRQCYIVYPLVEESEKVDLKSCIAAY 539

Query: 508 NSL-HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             L HE F+   + ++HG+M   +K+ VM  F     ++L++TTVIEVGIDV +A++++I
Sbjct: 540 EHLKHEIFSDFEVGLVHGKMETEEKDRVMQEFSKNRIQILVSTTVIEVGIDVPNATVMMI 599

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           E+A+ FG++QLHQLRGRVGRG+E S CIL+    +++++  RL  + N  DGF ++E DL
Sbjct: 600 EHADRFGISQLHQLRGRVGRGDEESFCILMTDSKVTEDAKVRLDAMVNFSDGFALSEIDL 659

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           + R  GE++G++QSG+P F IA       L+E+ R+DA  IL  +P
Sbjct: 660 QLRGPGELMGVRQSGLPDFRIADLRKDSKLIELTREDA--ILFGNP 703


>gi|254519230|ref|ZP_05131286.1| ATP-dependent DNA helicase RecG [Clostridium sp. 7_2_43FAA]
 gi|226912979|gb|EEH98180.1| ATP-dependent DNA helicase RecG [Clostridium sp. 7_2_43FAA]
          Length = 676

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 236/670 (35%), Positives = 371/670 (55%), Gaps = 29/670 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS-EE 67
           +F  +S+ +GVG K +  L+K   CG        DLL Y P  +         +EI  EE
Sbjct: 3   IFMEISSLKGVGPKLTEKLNK---CGIFT---IYDLLLYFPRDYEFIKGDVAFNEIDGEE 56

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           + +     I      + +  +    +  D  G I +  ++ +   +KN +       + G
Sbjct: 57  KQILTCRVIGYDRDVKTKTGKIISAIKFDYKGHIVIAKWFNQ-RYIKNSYRLNEFYDLVG 115

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           K K++ N + +++P       +D     I   Y L   LS  +  K+I + L  + ++ +
Sbjct: 116 KFKRVGNLLEVINPMV---GCRDAKKSEIIPKYPLKGDLSDRIITKLINQILDEV-IITD 171

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            + K++L K     + +A   IH P+   D +    A  RL + EL    + LLL++ + 
Sbjct: 172 NLPKEILDKYKMIGLDKAIREIHFPKGKGDLD---QAIIRLKFQELFTYSMKLLLLKNKL 228

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   GI      ++   +  ++PF+ T +Q   +++IL+D   K  M R++QGDVGSGKT
Sbjct: 229 RSNDGISFYWHEELTT-LKESLPFNLTDAQTKVVREILRDQKSKYSMNRLVQGDVGSGKT 287

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA+IAM   ++ G QA +M P  ILA QHYE   K  +N  + VE++TG+     +R+ 
Sbjct: 288 IVAIIAMFNVIKNGFQASLMVPTEILANQHYEETLKILKNFNVEVELLTGSTSLKEKRRI 347

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            ERI+ G+  I+IGTHAL Q+ + +  L LVI DEQHRFGV+QR KL  K   P VL+MT
Sbjct: 348 KERISTGEPLIVIGTHALIQEDVDFTNLGLVITDEQHRFGVEQRSKLINKGRRPDVLVMT 407

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKK 484
           ATPIPRTL L    D+D+S I + P GRK I T     N  D ++    + L E   G++
Sbjct: 408 ATPIPRTLALYMYSDLDVSIIDKLPPGRKKIDTRFYSEN--DRMLA-YDLALDEIRKGRQ 464

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP IEE ++    SV + +  L +    +I+  I+HG+M   +K+ +++ FK+   
Sbjct: 465 VYIVCPLIEENEKMELNSVEKLYEELKDGVFKNISVEILHGKMKPKEKDELINLFKDDKI 524

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K++I+TTVIEVG++V +AS++IIEN+E FGLAQLHQLRGRVGRG+  S CIL+     +K
Sbjct: 525 KVIISTTVIEVGVNVPNASMMIIENSERFGLAQLHQLRGRVGRGQYESYCILIGK---AK 581

Query: 603 NSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           N  T  R+ ++  + DGF I+E+DLK R  GE+ G++QSG    ++A       +L+ AR
Sbjct: 582 NEKTRKRMKIMTESTDGFYISEQDLKLRGAGEMFGLRQSGDIGLVLADIYEDIDILKCAR 641

Query: 661 KDAKHILTQD 670
            +A +++  +
Sbjct: 642 YEANNLINSE 651


>gi|254303429|ref|ZP_04970787.1| ATP-dependent DNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323621|gb|EDK88871.1| ATP-dependent DNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 689

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 227/608 (37%), Positives = 350/608 (57%), Gaps = 20/608 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEI 101
           DL++Y P ++ DR    KI E+     V +   +    +  ++  ++  K +++DGTG +
Sbjct: 38  DLIYYFPRAYDDRTNIKKIGELKFNEYVVLKANVMSVVNLTVRSGKKIVKAMVSDGTGIM 97

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160
            +L+F      +K     G +    G+ KK      +++P Y +F   Q  +   I  +Y
Sbjct: 98  EILWF--GMPYIKKSLKIGEEYLFIGQTKK-SAVFQLINPEYKLFSGQQKASESEILPIY 154

Query: 161 SLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           S    ++ +  +K++ + L   L    E I K+L+++        A   IH P   K+ E
Sbjct: 155 SSNKNITQNSLRKLVEKFLVNFLNYFEENIPKELIKEYKIMERKSAIKNIHYPVSMKEIE 214

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQ 277
               A+ R A +ELL  ++ +L  R   +        VEGK    ++ L  + F+ T +Q
Sbjct: 215 ---EAKRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKVKEFLSQLTFNLTNAQ 271

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +  IK+I  ++S    + R++QGDVGSGKT+VA++ +    E G Q  +MAP  ILA QH
Sbjct: 272 KKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGYQGALMAPTEILANQH 331

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y  IK+  +   + VE++T ++    + + LE IA+G+  I+IGTH+L +D + + KL L
Sbjct: 332 YLGIKERLEKIGLRVELLTSSIKGKKKTEILESIANGEVDIVIGTHSLIEDDVIFKKLGL 391

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +++DEQHRFGV QR KL +K    ++L+M+ATPIPR+L L+  GD+D+S I E P GR P
Sbjct: 392 IVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGDLDLSIIDELPPGRTP 451

Query: 458 IKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           IKT  I     DE +E++   +    ++G +AY++ P IE   +   +SV +    +   
Sbjct: 452 IKTKWIA---NDEDLEKMYNFIYKKVNDGNQAYFVAPLIETSDKMALKSVDKVSEEIERK 508

Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           F++  I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  ++I+ I NAE FG
Sbjct: 509 FSNKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPTSTIMTIYNAERFG 568

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+ LHQLRGRVGRG + S C L+ +   ++NS  RLS+++ TEDGF IAEEDLK R  GE
Sbjct: 569 LSALHQLRGRVGRGSKQSYCFLISNST-TENSKQRLSIMEKTEDGFRIAEEDLKLRNSGE 627

Query: 633 ILGIKQSG 640
           I G++QSG
Sbjct: 628 IFGLRQSG 635


>gi|227893319|ref|ZP_04011124.1| DNA helicase RecG [Lactobacillus ultunensis DSM 16047]
 gi|227864899|gb|EEJ72320.1| DNA helicase RecG [Lactobacillus ultunensis DSM 16047]
          Length = 681

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 221/686 (32%), Positives = 368/686 (53%), Gaps = 28/686 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +       + G+       DLLFY P  + +    P + +I +
Sbjct: 7   NALFAPVTDLKGVGTKTA------ADLGSLGIYSIYDLLFYFPFRYDELQTLP-LDQIMD 59

Query: 67  ERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + V + G ++     S F  +K R  +K+ ++    ++ ++ F+ +   LKN    G++
Sbjct: 60  GQKVMLKGIVATEPFVSRFGYKKTRLSFKMRIDH---DVIMVNFFNQP-WLKNKIEIGQE 115

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           + + GK    +  +      ++     D    P+      +     V+L    I   L +
Sbjct: 116 VAIYGKYNVARESLSAFK--FVAAKENDSGMAPIYPVNRHVKQKKLVNLINLAIDNFLDQ 173

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           +  ++P  I     +K       E    +H P+  ++ E    A+    + E    ++ L
Sbjct: 174 VQDIVPLQIR----EKYRLLKDQEIIQKMHRPKNGQEAEI---AKRSAIFREFFIFELQL 226

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+     K+ G P   + K    +  ++PF  +  Q+  + +I  DM    +M R+LQG
Sbjct: 227 TLLASHDGKQEGYPKKYDLKEIANLTNSLPFELSNDQKRVVNEIFADMHSPGQMRRLLQG 286

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   + V ++TGN  
Sbjct: 287 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 346

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+    +  G  +++IGTHAL Q ++ + KL LVI+DEQHRFGV QR  L  K   
Sbjct: 347 TLERREIYRELTDGTINVVIGTHALIQKNVIFKKLGLVIIDEQHRFGVGQRQALINKGDR 406

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P +L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +     +++ EV   +   L 
Sbjct: 407 PDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISAWKTSSQMKEVYHLMHEQLD 466

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSL-HEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +G + Y + P I E +  + ++  E    L H+     + ++HG+M    K+ +M +F N
Sbjct: 467 QGFQIYAVTPLITESETLDLKNAEELHKKLSHDFPDQKVVLLHGQMPGPKKDEIMTAFAN 526

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG   S C+ +  P 
Sbjct: 527 GEINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGITQSYCVFVADPK 586

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            + +   R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F +     + + L +A
Sbjct: 587 -TDSGKARMKIIAATNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVA 645

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685
           +K A+ ++ +DP+L+    ++++ +L
Sbjct: 646 QKVARSLVKKDPELSDPEHKALKQVL 671


>gi|296119649|ref|ZP_06838207.1| ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967532|gb|EFG80799.1| ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM 20306]
          Length = 698

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 225/647 (34%), Positives = 365/647 (56%), Gaps = 64/647 (9%)

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           E   +T++G ++  +   ++      + ++D     T +FF    +  + V + G ++  
Sbjct: 60  EGSFITVSGTVTHIAKRPIRNGFVLNVTVDDA---YTAVFFNGVWQ--ERVLYPGIRVLF 114

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII-VEALSR--- 181
           +GK+K   N   + HP ++      ++ P  E+  S   G ++    + + VE L R   
Sbjct: 115 SGKLKFFHNTAQLQHPEFLI-----LDAPRGESAVSKRWGGTLKAIAQFVDVEELLRDRE 169

Query: 182 -LPVLPE------WIEKDLLQK--KSFPSIAEAFNI-----------IHNPRKAKDFEWT 221
            LPV P       W     +    K+ P I +  +I           IH PR     E  
Sbjct: 170 WLPVYPASSTLKTWTIMAAIHHVLKTLPPIEDPLDISDLTFDMALRQIHEPRP----EGP 225

Query: 222 SPARERLAYDELLAGQIALLLMRKQFK--KEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
             A +RL Y+E L   + + L R+  +  +   +P   +G  A+ +L  +PF  T  Q+ 
Sbjct: 226 QRAIDRLKYNEALGIGLVMALRRRDTRHWRAFALPPAPDGYRAE-MLAKLPFELTGGQQR 284

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            +KDI +D+S+   M R+LQG+VGSGKTLVA+ AM +AV+AG QA ++AP  +LA QH  
Sbjct: 285 VLKDIDRDLSKAEPMSRLLQGEVGSGKTLVAVAAMLSAVDAGHQAALLAPTEVLAHQHAR 344

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            I     +  I + +++G+M  A +R+AL  I  GQA I++GTHA+ Q++++++ L +V+
Sbjct: 345 SISAMLPD-DIRLTVLSGSMKVAEKRQALLDIVSGQADIVVGTHAIIQETVEFFSLGMVV 403

Query: 400 VDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           VDEQHRFGV+QR  L  KA   T PHVL+MTATPIPRT+ +T  GD+++S + E P GRK
Sbjct: 404 VDEQHRFGVEQRDSLRMKAPEGTFPHVLVMTATPIPRTIAMTVFGDLEVSSLHELPGGRK 463

Query: 457 PIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           PI++ ++P  +   +    ER++  ++ G +AY +CP+IE +       V+E    L + 
Sbjct: 464 PIQSSVVPEAKPTWVTRAFERIREEVAAGHQAYIVCPRIEGEG-----GVLELAEELQDG 518

Query: 514 FTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
             +   I ++HGRM D D+   M +F  G   +L++TTVIEVG+DV +A++++I  +E+F
Sbjct: 519 PLAGLRIMVLHGRMDDKDER--MAAFARGDIDVLVSTTVIEVGVDVANATVMLIRESENF 576

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKN--SYTRLSVLKNTEDGFLIAEEDLKQRK 629
           G++QLHQLRGRVGRG   S C  L+H   + N  S+ R++ +  T  GF + E D++ R+
Sbjct: 577 GVSQLHQLRGRVGRGGNASLC--LFHTLAAPNSESFERIAKIAATSSGFELTELDMEYRR 634

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIAR--KDAKHILTQDPDLT 674
           EG++LG +QSG  + L    +L + LL I R  +DA  ++  +P+L 
Sbjct: 635 EGDVLGTRQSGRQRTLQLL-DLSEDLLIIERAYEDAYQLVDDNPELA 680


>gi|241766968|ref|ZP_04764765.1| ATP-dependent DNA helicase RecG [Acidovorax delafieldii 2AN]
 gi|241362544|gb|EER58432.1| ATP-dependent DNA helicase RecG [Acidovorax delafieldii 2AN]
          Length = 768

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 233/700 (33%), Positives = 355/700 (50%), Gaps = 74/700 (10%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           R IDL  + P  + D      +    +  +  I   ++     Q++ RR   + ++DGTG
Sbjct: 61  RDIDLALHLPLRYEDETRITPLRNARDGEVAQIEATVTS-CEVQMRPRRQLLVQVDDGTG 119

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEA 158
              L FF       K     G ++ + G++K       M+HP +     +    P  +  
Sbjct: 120 TCELRFFSFYPSHQKT-LAAGARLRIRGEVKGGFWGRQMLHPAFRVAGGE---LPAALTP 175

Query: 159 VYSLPTGLSVDLFKKIIVEALSRL-----------PVLPEWIEKDLLQKKSFPSIAEAFN 207
           VY    GL     ++ +V AL R            P +   + K+ LQ+ +F S+ EA  
Sbjct: 176 VYPTTAGLPQPYLRRSVVGALQRADLSETVPPGLEPPMGRILSKNGLQR-AF-SLREALT 233

Query: 208 IIHNPRKAKDFEWTS------PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI 261
            +H+P    D   T+      PA +RL  +ELLA Q++    R++  +     +    ++
Sbjct: 234 FLHHP--TPDVALTTLEDHSHPAWQRLKAEELLAQQLSQQQSRRERDRLRAPVLQPRPRV 291

Query: 262 AQ------KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
            Q      ++L  +PF  T +Q    ++I  D+++   M R+LQGDVGSGKT+V+ +A A
Sbjct: 292 GQALPLHEQLLAVLPFGLTAAQRRVGEEIAADLARPVPMHRLLQGDVGSGKTVVSALAAA 351

Query: 316 AAVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             ++AG Q  +MAP  ILA+QH+     +++     T   V  + G   +  R   L  +
Sbjct: 352 ICMDAGWQCALMAPTEILAEQHFAKMIGWLEPLLAATGRRVAWLVGGQKKKERAAMLALV 411

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-------------- 417
           A G+A +++GTHA+ Q+ +Q+  L L I+DEQHRFGV QRL L +K              
Sbjct: 412 ASGEAALVVGTHAVIQEQVQFRNLALAIIDEQHRFGVAQRLALRKKLAEGIATGPAQGDA 471

Query: 418 ------------------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
                             A  PH+L+M+ATPIPRTL ++   D+D+S I E P GR PI 
Sbjct: 472 APSGGRDQRRGGAWGPSTAMEPHMLMMSATPIPRTLAMSYYADLDVSVIDELPPGRTPIV 531

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-I 518
           T +I  +R  EVIER+   ++ G++ YW+CP IEE +  +  +       L E      +
Sbjct: 532 TKLIADSRKYEVIERIGAQVAAGRQVYWVCPLIEESEALDLSNATATRVDLSEALPGCMV 591

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++H RM   +K++VM  F +G   +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQ
Sbjct: 592 GLLHSRMPTAEKKAVMALFTSGQMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQ 651

Query: 579 LRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           LRGRVGRG   S+C+LLY       + + +  RL  +  T DGF IA  DL+ R  GE L
Sbjct: 652 LRGRVGRGAAASACVLLYATNDSGRVGETAKERLRAMAETNDGFEIARRDLEIRGPGEFL 711

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           G +QSG      A      +LLE AR  A  +L Q P L 
Sbjct: 712 GARQSGDALLRFADLATDTALLEWARATAPRMLDQFPALA 751


>gi|260663566|ref|ZP_05864456.1| ATP-dependent DNA helicase RecG [Lactobacillus fermentum 28-3-CHN]
 gi|260552107|gb|EEX25160.1| ATP-dependent DNA helicase RecG [Lactobacillus fermentum 28-3-CHN]
          Length = 678

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 220/632 (34%), Positives = 350/632 (55%), Gaps = 20/632 (3%)

Query: 43  DLLFYHPSSFIDRHYRP-KISEISEERIVTITGYISQH---SSFQLQKRRPYKILLNDGT 98
           DLL ++PS + D  + P  ++   +++ VT+ G +      S +  ++ R    L+    
Sbjct: 32  DLLTHYPSRYDD--FAPTDLTVAKDKQKVTVKGTVVSEPLMSRYGYRRSRMSFRLVVGQA 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
           G + +++F +    LK        +TV G     + +I+      +  +S+      + A
Sbjct: 90  GVVNVVYFNQP--YLKQQVEPNHDVTVLGTWDAPRQQILGTK--LVVADSK---AEAVGA 142

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            Y     +     +K+I +A  +   V+   +   L Q+       E    +H P    D
Sbjct: 143 TYPANKHVRQTTLRKLIRQAFDQYQNVIATLLPISLRQRYQLMERREMIKQMHFP---TD 199

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
                 A+   A++E    ++ L  +R+  +KE G+ I       +  ++ IPF  T +Q
Sbjct: 200 TTMAEAAKRTAAFEEFFLFELRLQAIRRANRKEEGLQILYNNAELRDFIKTIPFELTAAQ 259

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +  + +I +D+    +M R+LQGDVGSGKT+VA IA+ AAV AG Q  +MAP  ILA QH
Sbjct: 260 KRVVNEICRDLRAPYQMNRLLQGDVGSGKTIVAAIAVMAAVLAGYQVALMAPTEILAAQH 319

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E + K    T + V ++TG +      +  + I  G  ++I+GTHAL Q+ + Y  L L
Sbjct: 320 AEKLAKVFSGTHVEVALLTGALTAKQHDQLAKAIKAGDVNLIVGTHALIQNGVDYANLGL 379

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI+DEQHRFGV QR +L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR+P
Sbjct: 380 VIIDEQHRFGVNQRQQLREKGEHPDVLAMTATPIPRTLAITAYGEMDVSVIDELPAGRQP 439

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--T 515
           IKT  +  N+    ++ L   L  G +AY + P IEE +  + ++  + +    EHF  T
Sbjct: 440 IKTTWLKGNQGQSALDFLDQQLRAGAQAYVVSPLIEESENLDVKNATDLYARFKEHFGPT 499

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HGRM++ +K  VM  F+ G  ++++ATTVIEVG+D  +A++++I +A+ FGLAQ
Sbjct: 500 YQVGLLHGRMNNDEKAVVMKDFQAGKVQVMVATTVIEVGVDNPNATVMLIYDADRFGLAQ 559

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG+  S C+L+  P   +    R+  +  T DGF +A++DL+ R  G++LG
Sbjct: 560 LHQLRGRVGRGKRQSYCLLVADPKTDEGK-ARMETMVATTDGFEVAQKDLELRGAGDVLG 618

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            +QSGMP F +  P     +L+IAR DA ++L
Sbjct: 619 DRQSGMPDFKVGDPVGDLKMLQIARADAGNLL 650


>gi|255324609|ref|ZP_05365726.1| ATP-dependent DNA helicase RecG [Corynebacterium tuberculostearicum
           SK141]
 gi|255298515|gb|EET77815.1| ATP-dependent DNA helicase RecG [Corynebacterium tuberculostearicum
           SK141]
          Length = 710

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 232/684 (33%), Positives = 371/684 (54%), Gaps = 78/684 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           +LL ++P  +I  +    + + +E  IVT+TG I+  +     K     + L+   G I 
Sbjct: 33  ELLAHYPRDYIRHNKDVGLGDAAEGDIVTVTGTITGFTRHDSGKTTIINVQLD---GSII 89

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS--------QDVNFP 154
             FF      +  +   G+++ ++GK+K  +N+  +  P ++  ++         D   P
Sbjct: 90  ATFF--NANYVMRMLHRGQRVMMSGKLKFFRNQPQLQQPDFVEIDAFGRPDGELDDYRQP 147

Query: 155 LIEA--------------------------------VYSLPTGLSVDLFKKIIVEALSRL 182
             E+                                VY   + ++       I   LS+ 
Sbjct: 148 AAESGKKHRPKATGSLRNLSQFGRLDQLLLEREWIPVYPATSKVTSWYIMGAIHYVLSKT 207

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
           P + E ++  ++      S+ +A   IH P +A  +     A +RL Y+E L+  I L++
Sbjct: 208 PPIEEPLDYQMI-----ISLDKAVREIHEPGEAGPYR----AIQRLKYNEALS--IGLVM 256

Query: 243 MRKQFKKEI----GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
             +Q   E      +P  + G   ++++ ++PF  T+ Q   I +I  D+++   M+R+L
Sbjct: 257 ALRQRDAEARTASTMPATL-GGYREELVSHLPFDLTEGQRRVISEIEDDLARPLPMMRLL 315

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QG+VGSGKT+VA  AM  AV+AG QA ++AP  +LA QH   I         +V ++TG+
Sbjct: 316 QGEVGSGKTMVATCAMLQAVDAGTQAALLAPTEVLASQHAASIGTSVPEGVKVV-LLTGS 374

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           M  A +R+AL  I  G A I+IGTHA+ QDS++++ L LV+VDEQHRFGV+QR  L  KA
Sbjct: 375 MRTADKRQALLDIVSGDADIVIGTHAIIQDSVEFFNLGLVVVDEQHRFGVEQRDSLRLKA 434

Query: 419 T---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVI 472
               +PHVL+MTATPIPRT+ +T  GD+ +S +TE P GRKPI++ ++   R   +   +
Sbjct: 435 REGLSPHVLVMTATPIPRTIAMTVFGDLAVSTLTELPGGRKPIQSAVVAEWRPTWVLRAL 494

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH-FTS-SIAIIHGRMSDIDK 530
           ER++  ++ G +AY +CP+IE K       V+E    L    F    IAI+HG+M +  K
Sbjct: 495 ERIREEVAHGHQAYIVCPRIEGKG-----GVLELAQQLENGPFKGLRIAILHGKMPN--K 547

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + VM SF  G   +L++TTVIEVG+DV +A++++I  +EHFG++QLHQLRGRVGRG   S
Sbjct: 548 DEVMTSFARGEIDILVSTTVIEVGVDVPNATVMLIRESEHFGVSQLHQLRGRVGRGGNAS 607

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+L      +  S+ R++ +  T  GF +AE DL+QR+EG+ILG  QSG  + L     
Sbjct: 608 VCLLHTTAADNTPSFRRITQIAQTSSGFELAELDLRQRQEGDILGTMQSGTHRTLRLLNL 667

Query: 651 LHD-SLLEIARKDAKHILTQDPDL 673
             D  ++E    DA+ ++ ++P+L
Sbjct: 668 ADDQDIVERTHTDARAMVLRNPEL 691


>gi|225027125|ref|ZP_03716317.1| hypothetical protein EUBHAL_01381 [Eubacterium hallii DSM 3353]
 gi|224955589|gb|EEG36798.1| hypothetical protein EUBHAL_01381 [Eubacterium hallii DSM 3353]
          Length = 682

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 220/661 (33%), Positives = 351/661 (53%), Gaps = 22/661 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERIV 70
           P+   +G+G+K    L+K+       +   +D L +H       +  P  ISEI   +  
Sbjct: 13  PVREIKGIGEKTEKLLAKL-------DIETVDQLVHHYPRCYTTYPEPISISEIKTGQRC 65

Query: 71  TITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           +I   I+  S   L+  R  K+   L+ D +G++ + +F      L+N   +G +   TG
Sbjct: 66  SIEAEIA--SPIHLKTVRKLKLCTGLIADVSGQLFVRWF--NMPYLRNTLKQGEQWIFTG 121

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
                  R+++  P Y             + +Y L TGLS    +K    A   +    E
Sbjct: 122 TPIYKDGRLMLEQPEYCKREKYLQLMETFQPIYPLTTGLSNKTVQKAQAAAFE-MYREEE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
           ++ + +        +  A   +H P      E    A++R+ +DE      AL L++ + 
Sbjct: 181 YLPETVRNYYDLEPVNTALREVHFPTGT---EHLMEAKKRIIFDEFFRFFSALELVKDRE 237

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++ +   I    +  ++ + N+P+  T +Q+  + +I QD S    M R+LQGDVGSGKT
Sbjct: 238 EQALNHYIIPMEEPVKRFVENLPYPLTGAQKKVLNEIRQDFSDTMAMNRLLQGDVGSGKT 297

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA+ AM AAV AG QA +MAP  +LA+QHY+   K      I V ++TG+     +R+ 
Sbjct: 298 IVAMTAMYAAVLAGYQAALMAPTEVLAEQHYQNFVKLLSPLGITVALLTGSTKAKEKREI 357

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
               A G+  I+IGTHA+ QD + +  L  ++ DEQHRFGV+QR    +K   PHVL+M+
Sbjct: 358 KAACASGEIQILIGTHAVIQDDVAFDNLAFIVTDEQHRFGVKQRDAFMKKGKDPHVLVMS 417

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +    D+D+S + E PA R PIK  ++  +      E ++  ++ G +AY 
Sbjct: 418 ATPIPRTLGIILYRDLDVSIMNEMPASRLPIKNSVVGTSYRPAAWEFIRKQVALGHQAYV 477

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ +  +V E    L +    SI +  ++G M   +K  +M+ F     ++L
Sbjct: 478 ICPMIEENEKMDLENVEEYARMLSQALPPSITVEALNGHMRPAEKNDIMERFSKNEIQIL 537

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVGIDV +A++++IENAE FGLAQLHQLRGRVGRG+  S C+ +      + + 
Sbjct: 538 VSTTVVEVGIDVPNATVMLIENAERFGLAQLHQLRGRVGRGKAQSYCVFISGSE-KEEAM 596

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RLS++ ++ DGF IA EDLK R  GE  G+KQSG   F +     +  +L++A +   +
Sbjct: 597 ERLSIIGHSNDGFEIANEDLKLRGPGEFFGVKQSGTMNFALGDIYSNADILKMASEAVDY 656

Query: 666 I 666
           +
Sbjct: 657 L 657


>gi|227515691|ref|ZP_03945740.1| DNA helicase RecG [Lactobacillus fermentum ATCC 14931]
 gi|227085939|gb|EEI21251.1| DNA helicase RecG [Lactobacillus fermentum ATCC 14931]
          Length = 678

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 220/632 (34%), Positives = 350/632 (55%), Gaps = 20/632 (3%)

Query: 43  DLLFYHPSSFIDRHYRP-KISEISEERIVTITGYISQH---SSFQLQKRRPYKILLNDGT 98
           DLL ++PS + D  + P  ++   +++ VT+ G +      S +  ++ R    L+    
Sbjct: 32  DLLTHYPSRYDD--FAPTDLTVAKDKQKVTVKGTVVSEPLMSRYGYRRSRMSFRLVVGQA 89

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
           G + +++F +    LK        +TV G     + +I+      +  +S+      + A
Sbjct: 90  GVVNVVYFNQP--YLKQQVEPNHDVTVLGTWDAPRQQILGTK--LVVADSK---AEAVGA 142

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            Y     +     +K+I +A  +   V+   +   L Q+       E    +H P    D
Sbjct: 143 TYPANKHVRQTTLRKLIRQAFDQYQNVIATLLPISLRQRYQLMERREMIKQMHFP---TD 199

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
                 A+   A++E    ++ L  +R+  +KE G+ I       +  ++ IPF  T +Q
Sbjct: 200 TTMAEAAKRTAAFEEFFLFELRLQAIRRANRKEEGLQILYNNTELRDFIKTIPFELTAAQ 259

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +  + +I +D+    +M R+LQGDVGSGKT+VA IA+ AAV AG Q  +MAP  ILA QH
Sbjct: 260 KRVVNEICRDLRAPYQMNRLLQGDVGSGKTIVAAIAVMAAVLAGYQVALMAPTEILAAQH 319

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E + K    T + V ++TG +      +  + I  G  ++I+GTHAL Q+ + Y  L L
Sbjct: 320 AEKLAKVFSGTHVEVALLTGALTAKQHDQLAKAIKAGDVNLIVGTHALIQNGVDYANLGL 379

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI+DEQHRFGV QR +L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGR+P
Sbjct: 380 VIIDEQHRFGVNQRQQLREKGEHPDVLAMTATPIPRTLAITAYGEMDVSVIDELPAGRQP 439

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--T 515
           IKT  +  N+    ++ L   L  G +AY + P IEE +  + ++  + +    EHF  T
Sbjct: 440 IKTTWLKGNQGQSALDFLDQQLMAGAQAYVVSPLIEESENLDVKNATDLYARFKEHFGPT 499

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HGRM++ +K  VM  F+ G  ++++ATTVIEVG+D  +A++++I +A+ FGLAQ
Sbjct: 500 YQVGLLHGRMNNDEKAVVMKDFQAGKVQVMVATTVIEVGVDNPNATVMLIYDADRFGLAQ 559

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG+  S C+L+  P   +    R+  +  T DGF +A++DL+ R  G++LG
Sbjct: 560 LHQLRGRVGRGKRQSYCLLVADPKTDEGK-ARMETMVATTDGFEVAQKDLELRGAGDVLG 618

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            +QSGMP F +  P     +L+IAR DA ++L
Sbjct: 619 DRQSGMPDFKVGDPVGDLKMLQIARADAGNLL 650


>gi|254392467|ref|ZP_05007647.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC
           27064]
 gi|197706134|gb|EDY51946.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC
           27064]
          Length = 741

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 228/709 (32%), Positives = 363/709 (51%), Gaps = 88/709 (12%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100
           DLL ++P  + +R    +++E+  +  VT+   ++     +F   + +  ++ + DG+G 
Sbjct: 28  DLLHHYPRRYEERGRLTRLAELPLDEEVTVVAQVADARVHTFNGGRGKRLEVTITDGSGR 87

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI---------------- 144
           + L+FF R           G +    G++     ++ + HP Y                 
Sbjct: 88  LQLVFFGRGVHKPHQELLPGTRAMFAGRVSVFNRKLQLAHPSYAKLGTGDGADGGGGHDD 147

Query: 145 ------FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
                 +  +    +P  + + S     +VD       EA   LP         L + + 
Sbjct: 148 GTAVDSWAGALIPIYPACKGMESWKIAKAVDAVLPRRTEATDPLP-------PALREGRG 200

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI--- 255
           F  + EA   +H PR   D E    AR+RL +DE    Q+AL   R++F  +  +P    
Sbjct: 201 FVPLPEALLKVHRPRTKADIEA---ARQRLKWDEAFVLQVAL--ARRRFA-DTQLPAVAR 254

Query: 256 -NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
               G I       +PF+ T+ Q     +I  D++ ++ M R+LQG+VGSGKTLVAL AM
Sbjct: 255 RPAPGGILDAFDARLPFTLTEGQRKVTGEIFGDLATEHPMHRLLQGEVGSGKTLVALRAM 314

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-------------TQIIVEIITGNMPQ 361
            A V+AGGQA ++AP  +LAQQH+  + +   +             T+++V  +TG+M  
Sbjct: 315 LAVVDAGGQAAMLAPTEVLAQQHHRSVVEMMGDLADGGTLGAPDGATKVVV--LTGSMGA 372

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TA 420
           A RR AL  +  G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR  L  K    
Sbjct: 373 AARRAALLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQP 432

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLK 476
           PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI + ++P       +    ER++
Sbjct: 433 PHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPARDKPHFLARAWERVR 492

Query: 477 VVLSEGKKAYWICPQIEEKKESNFR------------------------SVVERFNSLHE 512
             + +G +AY +CP+I +++E                            +V+E    L  
Sbjct: 493 EEVGKGHQAYVVCPRIGDEEEGTGAAAKSGRKAADEEAQAADAEKRPPLAVLEIAEELER 552

Query: 513 HFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
              +   I ++HGRM   DK++VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ 
Sbjct: 553 GPLAGLRIGVLHGRMPPEDKDAVMRRFTAGEVDVLVATTVIEVGVNVPNATAMVIMDADR 612

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FG++QLHQLRGRVGRG     C+L+   P +  +  RL  +  T DGF ++  DL+QR+E
Sbjct: 613 FGVSQLHQLRGRVGRGSAPGLCLLVTEMPAASPARARLGAVAATLDGFELSRIDLEQRRE 672

Query: 631 GEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRG 678
           G++LG  QSG    L     + D  ++  AR++A   +  DP+L    G
Sbjct: 673 GDVLGQAQSGARSSLRMLAVIEDEEVIAAAREEAVRTVRADPELEHTPG 721


>gi|111023475|ref|YP_706447.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
 gi|110823005|gb|ABG98289.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
          Length = 752

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 229/717 (31%), Positives = 370/717 (51%), Gaps = 78/717 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99
           DLL ++P  +  +       +  E   +TI   ++  +  ++ K RP    K++L+  T 
Sbjct: 31  DLLRHYPHRYASQGRELAEKDPPEGEHITIIARVTSAAVVKM-KNRPGSMLKVVLSTDTQ 89

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF-----HNSQD--VN 152
            + + FF    + +K+V   G +   +G +K  + +  + HP Y+        S+D  VN
Sbjct: 90  NVDVTFF--SPQKVKHVIKPGVRAMFSGTVKYFRQKWSLTHPSYLILPEPRAGSEDPVVN 147

Query: 153 FPLIEAVYSLP--------TGLSVDL---------------------FKKIIVEALSRLP 183
              I     L          G  VD+                       K + + L +L 
Sbjct: 148 VGRIRGAGDLAGIARASQEAGAGVDMSVFDRALIPLYPATRDVESWTIMKCVRQILDQLD 207

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + + +++  ++    + EA   +H P   +D E    A +RL +DE  A Q+ L   
Sbjct: 208 RVDDPLPENIRAERDLIGLDEALRSVHLPDTREDVE---NAHDRLRFDEATALQLVLARR 264

Query: 244 RKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           R    + +      V G IA    + +PF  T  Q +   +I  D++Q + M R+LQG+V
Sbjct: 265 RHDNAERVAPECPPVPGGIADVFEKMLPFQLTDGQHAVADEISADLAQPHPMSRLLQGEV 324

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQII 351
           GSGKT+VAL AM   V+AG Q  ++AP  +LA QH   ++                    
Sbjct: 325 GSGKTIVALRAMLQVVDAGYQCALLAPTEVLATQHARSLRAMLGSLATAGELGAHEKATR 384

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V ++TG+MP A +R AL     G A I+IGTHAL QD+++++ L +V+VDEQHRFGV+QR
Sbjct: 385 VALLTGSMPVAAKRTALNEAITGDAGIVIGTHALIQDNVEFFNLGMVVVDEQHRFGVEQR 444

Query: 412 LKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
            +L  +A    +PH+L+MTATPIPRT+ +T LGD+++S + + P GR PIK+ ++P ++ 
Sbjct: 445 DRLRSRAREGLSPHLLVMTATPIPRTIAMTVLGDLEVSTLRQLPKGRSPIKSSVVPASQK 504

Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQIEE-----------KKESNFRSVVERFNSLHEH 513
              +    ER++  ++EG++AY +C +I +           +K    +S VE F  L   
Sbjct: 505 PQWVARAWERIREDVAEGRQAYVVCSRIGDGEKGDGEDAFDEKAPETKSAVEVFEELSGS 564

Query: 514 FTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 + ++HGR+   +K++VM  F  G   +L+ TTV+EVG+DV +A+I++I +A+ F
Sbjct: 565 IMPDLRVGLLHGRLPADEKDAVMRDFTAGDIDVLVCTTVVEVGVDVPNATIMVIVDADRF 624

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           G++QLHQLRGRVGRG     CIL+        +Y RLS + +T DGF +A+ DL  R+EG
Sbjct: 625 GVSQLHQLRGRVGRGRHQGLCILVTEMNPGGPAYERLSNVASTNDGFELAQLDLATRREG 684

Query: 632 EILGIKQSGMPKFLIAQPEL-HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           +ILG  QSG    L     L H+ ++  A + A+ ++  DP L +  G S  +   L
Sbjct: 685 DILGAAQSGTTSTLRLLSLLGHEDVIAAASEFARSVIADDPRLDNHPGLSAMVTSAL 741


>gi|298245570|ref|ZP_06969376.1| ATP-dependent DNA helicase RecG [Ktedonobacter racemifer DSM 44963]
 gi|297553051|gb|EFH86916.1| ATP-dependent DNA helicase RecG [Ktedonobacter racemifer DSM 44963]
          Length = 913

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 229/692 (33%), Positives = 361/692 (52%), Gaps = 54/692 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI-LLNDGTGEI 101
           DLLFY P    D      I ++    + T  G I + +  + +  +   I  ++D +G++
Sbjct: 223 DLLFYFPREHRDYSKITPIVDVPFNEVSTTMGLIWEVTVKRTRGNQSRTIATISDDSGKL 282

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI-IMVHPHYIFHNSQDVNFPLIEAVY 160
              +F +     +    +G  I +TGK ++  N++   V  H +   +  +N   +   Y
Sbjct: 283 YATWFNQPYLQKQLERAQGCYIVITGKKQRFGNKVEFNVQSHELPEQNDLLNTGRLVPTY 342

Query: 161 SLPTGLSVDL---FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           +L  GLS  +   F K +V+  +++  +P+ +   +        ++EA   IH P   ++
Sbjct: 343 ALTAGLSAKVLRRFTKWVVDRYAQM--VPDHLPTPIRDMGQLIPLSEAVAKIHYPDNEEE 400

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKE---------------IGIPIN------ 256
            +    A  RLA+DEL   Q+ +   R++++ E               IG P +      
Sbjct: 401 RQR---AYRRLAFDELFMIQLGMQERRERWQFEAPQGNALTIYPDKIFIGPPADESQDTP 457

Query: 257 -VEGKIAQKI----------------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
              G     I                   +PF  T +Q   I +I  DM++   M R+LQ
Sbjct: 458 PTSGTTISNIGIGSTLWSVTATDAPLEATLPFHYTDAQCRVINEIFIDMAKSKPMCRLLQ 517

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT VA   +  AV  G Q  IMAP  +LA+QH   I K  +   I   ++TG+ 
Sbjct: 518 GDVGAGKTAVAAAGLFMAVLNGSQGAIMAPTELLAEQHARSISKMLEPFGIRTVLLTGSQ 577

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             + R +    +  G+A + IGTHAL QD +++YKL LVIVDEQHRFGV+QR  L +K  
Sbjct: 578 RASERARGRAMLESGEAAVAIGTHALIQDDVKFYKLGLVIVDEQHRFGVEQRDALRKKGY 637

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH+L+MTATPIPRTL LT  GD+D+S I + P GR+ I +      R  E  + ++  +
Sbjct: 638 HPHMLVMTATPIPRTLSLTLYGDLDVSVIDQLPPGRQKIISRWRTGARRAESYDTIRQQV 697

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSF 537
            EG +A+ ICP IEE +    ++    +  L      T  + ++HG M   +K+ VM  F
Sbjct: 698 EEGHQAFIICPLIEESESLQVKAATTEYERLQREVFPTLRLGLLHGAMKPAEKDQVMHRF 757

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++    +L+AT+VIEVGIDV +A++++IE+A+ FGL+QLHQ RGRVGRG+  S C +L  
Sbjct: 758 RDHKLDILVATSVIEVGIDVPNATVMVIEDADRFGLSQLHQFRGRVGRGKHQSYCYVLSE 817

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LL 656
                 S  RL V +  +DGF +AEEDL+ R  G+ +G++QSGMP+  IA  +L D+ ++
Sbjct: 818 -DAGAQSQERLGVFEEIDDGFKLAEEDLRLRGPGDFIGVRQSGMPEMRIA--DLSDTRMI 874

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLY 688
           E+ R+ A  +   DP L      ++R  ++L+
Sbjct: 875 ELTRRIAASVWAGDPYLRKPEHTALRERMHLF 906


>gi|87307710|ref|ZP_01089853.1| ATP-dependent DNA helicase RecG [Blastopirellula marina DSM 3645]
 gi|87289324|gb|EAQ81215.1| ATP-dependent DNA helicase RecG [Blastopirellula marina DSM 3645]
          Length = 697

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 241/701 (34%), Positives = 389/701 (55%), Gaps = 29/701 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+   +GVG + +  L+K+ N   A     +DLLF+ P  + D      I+++ 
Sbjct: 10  LERLRTPVQFLKGVGPQRAEKLAKL-NIFTA-----LDLLFFFPRDYQDVRDVIPIAQLV 63

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLND--GTGEITLLFFYRKTEMLKNVFFEGRKI 123
           E+ I ++ G + + S   L+   P + +L     + E  L   +     L+  F EGR++
Sbjct: 64  EDEIASVIGTVEEIS---LRNTAPGRSVLGVLIRSDEQYLRAIWFNQPFLRRRFSEGRRV 120

Query: 124 TVTGKIKKLKNRIIMVHP-HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
            ++GK      R  M HP   +  + Q+     I  VYSL  G+     ++++  A+   
Sbjct: 121 LMSGKPTLNGLRWEMAHPIAEVLEDEQEEIGGKILPVYSLTEGIRQGAMRRLVHHAVEDY 180

Query: 183 -PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              + E + +  L +     + +A   IH P    D +  + A+ R  Y ELL  Q+AL 
Sbjct: 181 RKEIEEVLPQTFLDEHGLMPVHDAILQIHAP---DDHDARAAAQRRFIYQELLVLQLALA 237

Query: 242 LMRKQF---KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           + R Q    +  + IPI+  G+I ++I R IPF  T++Q  A+ ++ +D++    M R+L
Sbjct: 238 VRRYQLTSNRHSMSIPID--GRIDERIRRLIPFELTEAQNQAVAEVTRDLALDVPMNRLL 295

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL AM AAV AG QA +MAP  +LA+QH   + K     ++ V ++TG 
Sbjct: 296 QGDVGSGKTIVALYAMLAAVAAGAQAALMAPTEVLARQHVRTLGKLLAKAKVNVGLLTGT 355

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           + +  RR+ L ++A G+  +++GT A+    I+++KL LV++DEQH+FGV+QR +L    
Sbjct: 356 LTEKQRRELLAQLAAGEVQLLVGTQAIIASEIEFHKLGLVVIDEQHKFGVKQRGQLRGAG 415

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRT+ ++  GD+D+S I E P GR+P+ T I      ++  +  +  
Sbjct: 416 LDPHYLVMTATPIPRTIAMSLFGDLDVSSIREAPPGRQPVHTYIGTEEEREKWWKFFRKK 475

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLH----EHFTSSIAIIHGRMSDIDKESVM 534
           L EG++ Y + P ++E   ++  S  +   +L     E F   + ++HGRMS  DKE  M
Sbjct: 476 LREGRQGYVVAPLVDESSSADSASAEQLLETLSNGELEEF--RLGLLHGRMSAEDKEETM 533

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F+ G  + L++T+VIEVG+DV +A ++ IE  E FGLAQLHQLRGR+ RG   +  + 
Sbjct: 534 RKFRAGEIQALVSTSVIEVGVDVPNAVVMTIEGGERFGLAQLHQLRGRISRGSH-AGFLC 592

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           ++  P + +S  RL  L  + DGF +AE D + R  G++ G KQ GMP   IA  +    
Sbjct: 593 IFADPKTDHSRERLEALAKSNDGFELAELDFRLRGPGDLFGFKQHGMPPLRIADLQRDGD 652

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           LLE AR DA+ I+  DP L   + + +R ++++ +Y ++ +
Sbjct: 653 LLEKARADARSIIAADPALADAKWEKLRRMVFI-RYGKSLE 692


>gi|226324789|ref|ZP_03800307.1| hypothetical protein COPCOM_02575 [Coprococcus comes ATCC 27758]
 gi|225207237|gb|EEG89591.1| hypothetical protein COPCOM_02575 [Coprococcus comes ATCC 27758]
          Length = 595

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 210/562 (37%), Positives = 325/562 (57%), Gaps = 17/562 (3%)

Query: 43  DLLFYHPSSFIDRHYRP-KISEISEERIVTITGYISQHSSFQLQKR-RPYKILLNDGTGE 100
           DLL Y+P  + D +  P  + E+ E +I T+ G I         KR +     + D TG 
Sbjct: 31  DLLRYYPRGY-DVYEEPVSVGELEEGKISTVKGVIYGRVQVGGGKRMQITTAYVKDLTGT 89

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFH--NSQDVNFPLIEA 158
           + +++F  +   L+N   +G  + + G++   K+++IM HP  +F   +S D     ++ 
Sbjct: 90  LKVIWF--RMPFLRNTLKQGMPVIIRGRVVSKKDQLIMEHPE-LFSPPDSYDKKCGTLQP 146

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           +Y L  G++ +   K +  A+  L ++ + + KDL  +        A   IH P    +F
Sbjct: 147 IYPLTAGMTNNAVAKAVKGAMEYLDLVSDDLPKDLRLRYHLAEYNYAIRGIHFPLDKAEF 206

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQ 277
                ARERL ++E L   +AL   R++ ++ E G  I    +I  + L N+P+  T +Q
Sbjct: 207 ---YHARERLVFEEFLVFVLALRRTRERNERAENGFVIKRRSEI-DRFLANLPYELTGAQ 262

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +   + I ++M  K  M R++QGDVGSGKT+VAL+A+  A   G Q  +MAP  +LA+QH
Sbjct: 263 KRVWEQIQEEMCGKLVMSRLIQGDVGSGKTIVALLALLLAALNGYQGAMMAPTEVLAKQH 322

Query: 338 YEFIKKYTQNTQIIV--EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           YE I +  +  QI V  E++TG+M    +R+A +RIA G+  I++GTHAL Q+ ++Y  L
Sbjct: 323 YESIIEMLEKYQIPVKTELLTGSMTAKEKREAYQRIAAGEVQIVLGTHALIQEKVEYQNL 382

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LV+ DEQHRFGV+QR  L  K   PH+L+M+ATPIPRTL +   GD+DIS I E PA R
Sbjct: 383 ALVVTDEQHRFGVRQREALAGKGQIPHILVMSATPIPRTLAIILYGDLDISVIDELPANR 442

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            PIK  ++  +        ++  ++EG++ Y ICP +EE +  +  +V++    L     
Sbjct: 443 LPIKNCVVDTSYRPTAYRFMQKQVAEGRQCYVICPMVEESEAMDAENVLDYAQLLQSEMG 502

Query: 516 SS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               IA +HGRM   +K+ +M +F     ++L++TTVIEVGI+V +A++I++ENAE FGL
Sbjct: 503 DKIRIAALHGRMKQAEKDEIMGAFAKNEIQVLVSTTVIEVGINVPNATVIMVENAERFGL 562

Query: 574 AQLHQLRGRVGRGEEISSCILL 595
           AQLHQLRGRVGRG   S CI +
Sbjct: 563 AQLHQLRGRVGRGRHQSYCIFM 584


>gi|239928711|ref|ZP_04685664.1| ATP-dependent DNA helicase RecG [Streptomyces ghanaensis ATCC
           14672]
 gi|291437035|ref|ZP_06576425.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291339930|gb|EFE66886.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 740

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 228/718 (31%), Positives = 371/718 (51%), Gaps = 71/718 (9%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ---HSSFQLQKRRP----YKILLN 95
           DLL ++P  + +R     ++++  +  VT+   ++    H+    +  R      ++ + 
Sbjct: 34  DLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASAKAPRGKGQRLEVTIT 93

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD---- 150
           DG+G + L+FF             G +    GK+     R+ + HP Y +     D    
Sbjct: 94  DGSGRLQLVFFGAGVHKPHKELLPGTRALFAGKVSVFNRRLQLAHPAYELLRGDGDGAEE 153

Query: 151 -------VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                     P+  A   L +       + ++  A   +  LPE     L + +    + 
Sbjct: 154 TVESWAGALIPIYPATAKLESWKIGKALQTVLPSAREAVDPLPE----SLREGRGLVPLP 209

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK--EIGIPINVEGKI 261
           EA   IH P+   D E    AR RL +DE    Q+AL   R    +   +      +G +
Sbjct: 210 EALLKIHRPQTKADIE---DARARLKWDEAFVLQVALARRRHADAQLPAVARRPGPDGLL 266

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           A    R +PF+ T+ Q+    +I  D++ ++ M R+LQG+VGSGKT+VAL AM A V+AG
Sbjct: 267 AAFDDR-LPFTLTEGQQKVSAEIFADLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDAG 325

Query: 322 GQAVIMAPIGILAQQHYEFIKKY------------TQNTQIIVEIITGNMPQAHRRKALE 369
           GQA ++AP  +LAQQH+  + +              +N   +V ++TG+M  A RR AL 
Sbjct: 326 GQAAMLAPTEVLAQQHHRSVTEMMGELAEGGMLGGAENATKVV-LLTGSMGAAARRHALL 384

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTA 428
            +A G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR  L  K    PH+L+MTA
Sbjct: 385 DLATGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTA 444

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKK 484
           TPIPRT+ +T  GD++ S + + PAGR PI + ++P       +    ER++  +  G +
Sbjct: 445 TPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKPHFLTRAWERVREEVVGGHQ 504

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS---------------------SIAIIHG 523
           AY +CP+I ++++   ++  ++  S  +                          + ++HG
Sbjct: 505 AYVVCPRIGDEEDDPKKAGRKKPASPEDEAEKRPPLAVLDVADQLAKGPLHGLRVEVLHG 564

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           RM   DK++VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRV
Sbjct: 565 RMPPDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRV 624

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG     C+L+   P +  +  RL+ + +T DGF ++  DL+QR+EG++LG  QSG   
Sbjct: 625 GRGSAPGLCLLVTEMPEASAARQRLNAVASTLDGFELSRIDLEQRREGDVLGQAQSGTRS 684

Query: 644 FLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            L     + D  ++  AR++A  ++  DP+L   R  ++R  L      E  Q++  G
Sbjct: 685 SLRVLAVIDDEEIIAEARREATAVVAADPELE--RLPALRTALDALLDEEREQYLEKG 740


>gi|328675493|gb|AEB28168.1| ATP-dependent DNA helicase RecG [Francisella cf. novicida 3523]
          Length = 679

 Score =  347 bits (889), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 222/644 (34%), Positives = 365/644 (56%), Gaps = 32/644 (4%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
           F GVG+     L+K  N  + N     DLL   P  + D      I ++   +   I G 
Sbjct: 6   FNGVGEATVRALAKY-NLHSPN-----DLLTIFPKDYKDTRVVTPIDQLVAGKKSLIQGR 59

Query: 76  ISQHSSFQLQKRRPYKILLNDGTG---EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
           I+ + +++   ++  +  ++D TG    I   F+  +  ML+    +   +   GK++  
Sbjct: 60  IT-NLTYKKFGKKFLRFNVSDSTGFCSAILFKFYPNQITMLE----KSEYVRCYGKVELA 114

Query: 133 KNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
            N   M+HP + +  + +         VY L   +   L  K+I++ L    V    I  
Sbjct: 115 LNPQ-MIHPEWAVVKDGECALKQGFSPVYRLKK-IPDRLISKMIMKMLQDNKV-ENIIPA 171

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
            LL+K +  S ++A   +H      D ++   A+  + ++E+LA ++A   + K   K  
Sbjct: 172 KLLRKFNLISFSDALYYVHGLTNHIDEKYLHKAKFSIKFEEMLAYKLAEQNICKNTVKSQ 231

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
              + +     ++    +P+  T +Q+ AIK+IL D+ + N M R+LQGDVG+GKT+VA 
Sbjct: 232 SPQLCLTATEQREFYDKLPYQLTSAQQRAIKEILGDIKKSNTMNRLLQGDVGAGKTIVAT 291

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +A  AAV++G Q  IMAP  ILA+QH+ F+ +Y  +  I V  + G +     R++LE I
Sbjct: 292 MAAYAAVKSGYQVAIMAPTEILAEQHFSFLCQYLASFDIKVIPLLGKLSAKQTRESLEII 351

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLL 425
            + +  +++GTHA+FQ+ ++Y  L LV+VDEQHRFGV+QRL L  K+++      PH L+
Sbjct: 352 KNEKDCVVVGTHAIFQERVEYCNLGLVVVDEQHRFGVEQRLALINKSSSNASKLTPHQLI 411

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           ++ATPIPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +S G++ 
Sbjct: 412 ISATPIPRTLAMTLYGNLKLSILDELPPKRKPIVTTVLNRAKKQNLIEKVKQAVSRGEQV 471

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF-----TSSIAIIHGRMSDIDKESVMDSFKNG 540
           YW+CP +EE +  +F   ++   +L++         ++ +++G M   DK   M +FK  
Sbjct: 472 YWVCPLVEESENLDF---LQDVKTLYQELIVALGKENVGLVYGSMKSKDKLEEMAAFKAK 528

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +
Sbjct: 529 KYAVLVATTVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDRI 588

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           S+    RLS+++ ++DGF +AE+DL+ R  G+ILG +QSG+  F
Sbjct: 589 SEVGKKRLSLVRESQDGFYLAEKDLEIRGAGDILGKEQSGISIF 632


>gi|84498316|ref|ZP_00997113.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
 gi|84381816|gb|EAP97699.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
          Length = 735

 Score =  347 bits (889), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 234/698 (33%), Positives = 362/698 (51%), Gaps = 81/698 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERI---VTITGYISQHSSFQLQKRRP--YKILLNDG 97
           DLL Y P     R Y+   S ++  RI   +     +   ++  ++ RR    + ++ DG
Sbjct: 31  DLLAYWP-----RRYQSPESNLAAARIGSYIVAVAEVKTATTRSMKNRRGRMLQAVITDG 85

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----- 152
           + ++ + FF       K     G +    GK+    N++ + HP Y   +  D       
Sbjct: 86  SKDLEITFFSSHGHEGK--LVPGARALFAGKVSAFNNKLQLAHPGYSLLSDFDRGDRRNL 143

Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
            P+ +AV +L T    +  + +    L  L   PE I +D+L ++       A   IH P
Sbjct: 144 IPIYKAVGNLHTWTVTECVRMV----LDLLDESPEAIPEDVLDRRDLVDRMAALRGIHTP 199

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPF 271
               + +    A +R++Y+E L  Q+AL   R +  KE  +  +   G +     + +PF
Sbjct: 200 DSRAEID---AAEKRMSYEEALILQVALAQRRARQAKESTLARVPRPGGLLDAFDQRLPF 256

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
           + T  Q    + +  +M++   M R+LQG+VGSGKT++A+ AM AAV+AGGQA ++AP  
Sbjct: 257 TLTAGQVDIGETLATEMARDVPMHRLLQGEVGSGKTVIAVRAMLAAVDAGGQAALLAPTE 316

Query: 332 ILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           +LA QH+  I                +    V ++TG+M    RRKA+  IA G A I+I
Sbjct: 317 VLASQHHRSITTMLGDLAEGGMLGGSDIGTRVTLLTGSMSTQSRRKAMLDIASGDAGIVI 376

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTS 439
           GTHAL Q+ + +  L LV+VDEQHRFGV+QR  L  KA   PHVL+MTATPIPRT+ +T 
Sbjct: 377 GTHALIQEHVSFQDLALVVVDEQHRFGVEQRDALRGKAAQPPHVLVMTATPIPRTVAMTV 436

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE----GKKAYWICPQI--- 492
            GD++ S ++E PAGR PI T ++P  +    ++R  V ++E    G++AY +CP+I   
Sbjct: 437 FGDMETSTLSELPAGRAPITTHVVPEAKPG-WLQRTWVRIAEEVALGRQAYVVCPRIGDD 495

Query: 493 -------------------------EEKKESNFRS--VVERFNSLHEHFTS-------SI 518
                                    +E  E +      +   + +H    +       SI
Sbjct: 496 DEPDEDAEIFAPDAGGDPDSDGDGADEGAEGDAPPPRPLASVHRVHADLVANPALEGLSI 555

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I+HGR+   +K+++M  F +G   +L++TTVIEVG+DV +AS++++ +A+ FG++QLHQ
Sbjct: 556 EILHGRLPADEKDAIMRDFASGAIDVLVSTTVIEVGVDVPNASVMVVMDADRFGVSQLHQ 615

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG     C LL H   +   + RL  +  T DGF +A  DL+QR+EG+ILG  Q
Sbjct: 616 LRGRVGRGGLPGLC-LLVHGGDADAPHERLDAVAGTTDGFELARIDLRQRREGDILGSSQ 674

Query: 639 SGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTS 675
            G    L     L D  L+E AR+DA  ++  DPDL +
Sbjct: 675 HGKRTQLQFLHVLEDEDLIEAAREDAFAVVADDPDLGA 712


>gi|308177222|ref|YP_003916628.1| ATP-dependent DNA helicase RecG [Arthrobacter arilaitensis Re117]
 gi|307744685|emb|CBT75657.1| putative ATP-dependent DNA helicase RecG [Arthrobacter arilaitensis
           Re117]
          Length = 729

 Score =  347 bits (889), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 245/729 (33%), Positives = 378/729 (51%), Gaps = 69/729 (9%)

Query: 4   SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
           SF N   A LS +  +GKK S  L K        E      L++ P  +++      I+E
Sbjct: 8   SFEN---AELSAY--LGKKNSAALEKAFGYTTVGE-----FLWHFPRRYVEVGELTPIAE 57

Query: 64  ISEERIVTITGYISQHSSFQLQKRRPY--KILLND----GTGEITLLFFYRKTEMLKNVF 117
           +  +  VT+   +   S  Q+  RR +  ++ ++D    G  E+ + FF       +   
Sbjct: 58  LPFDEHVTVVAQVVNVSQRQMHSRRGFIFEVTVSDELSAGGQELKMTFF--NGYQARTDL 115

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVN---FPLIEAVYSLPTGLSVDLFKK 173
             G     +GK+   ++ + +  P Y I   +   +    P+  A   +P     DL   
Sbjct: 116 HIGTIAMFSGKVSWYQDYLQLSQPEYAILDEASQADPRPIPIYPASAKMPNKRIRDLMG- 174

Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
           +++E  +   + PE++  ++L  + +P   +AF   H P   K+ ++   AR+R A++E 
Sbjct: 175 LLLEQFTDQNI-PEFLPTEVLSSRHYPVRHQAFLDRHFP---KEIKYAYVARQRFAFEEA 230

Query: 234 LAGQIALLLMRKQF--KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
              Q+AL    +Q   +K I  P    G++A K    +PF  T+ Q    + I  D+ Q 
Sbjct: 231 FLLQLALGERGRQLGAQKAIARP-PAPGRLAAKFDAQLPFRLTEDQVLVGQHISADLEQS 289

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-------- 343
           + M R+LQG+VGSGKT+VAL A+   ++AGGQA ++AP  +LA QHY  I+K        
Sbjct: 290 HPMHRLLQGEVGSGKTIVALRAILQVIDAGGQAALLAPTEVLAAQHYASIRKMLGNLAEP 349

Query: 344 --YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
             + +     V ++TG+   A RR+AL  IA G+  +IIGTHAL  D +Q+ +L LV+VD
Sbjct: 350 GLFGEGEGTGVALLTGSAKTAQRREALLGIASGETGLIIGTHALLSDQVQFAELGLVVVD 409

Query: 402 EQHRFGVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           EQHRFGV+QR  L  KA  T PH L+MTATPIPRT+ +T  GD++ S I   PAGR PI+
Sbjct: 410 EQHRFGVEQRDALRAKAGDTVPHTLVMTATPIPRTVAMTVFGDLETSTIKRLPAGRAPIQ 469

Query: 460 TVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEK-----------------KESN 499
           T I+P+      D +  R+   + +G + Y +CP+I +                  +  +
Sbjct: 470 THIVPMQLSGFRDRLFSRITEEVQKGHQVYVVCPRISDTTAEQGVLLSTYDDSSVGQTMS 529

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             ++ E    + E        +H ++   DK+  MDSF  G   +LI+TTVIEVG+DV +
Sbjct: 530 VEAMQEMLAGMPEFAGIRTQTLHSQLDTTDKQETMDSFARGEIDVLISTTVIEVGVDVHN 589

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A++++I +AE FG++QLHQLRGRVGRG    +C++         S  RL  +++T DGF 
Sbjct: 590 ATLMVIMDAERFGISQLHQLRGRVGRGGLPGTCLMTTWLDADHPSVGRLKTIESTTDGFE 649

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHIL------TQDPD 672
           +AE DL +R+EG ILG++QSG    L     + D SL+E AR D   +L      T  P 
Sbjct: 650 LAEADLAERREGNILGVQQSGSKSSLRELSIIKDRSLIEQARADVGLVLANGKWGTHHPM 709

Query: 673 LTSVRGQSI 681
           L +  G  I
Sbjct: 710 LLAAAGSWI 718


>gi|294631617|ref|ZP_06710177.1| ATP-dependent DNA helicase RecG [Streptomyces sp. e14]
 gi|292834950|gb|EFF93299.1| ATP-dependent DNA helicase RecG [Streptomyces sp. e14]
          Length = 740

 Score =  347 bits (889), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 233/755 (30%), Positives = 385/755 (50%), Gaps = 76/755 (10%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P+   PL  PL +   +G   +  +++ +           DLL ++P  + +R     ++
Sbjct: 5   PALQEPLRRPLKSV--LGPATAKVMAEHLGLHTVG-----DLLHHYPRKYEERGRLTHLA 57

Query: 63  EISEERIVTITGYISQ-------HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKN 115
           ++  +  VT+   ++         S     K +  ++ + DG+G + L+FF         
Sbjct: 58  DLPMDEHVTVVAQVADARLHTFASSRAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHK 117

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN---------FPLIEAVYSLPTGL 166
               G +    GK+     ++ + HP Y      D            PL  A   + +  
Sbjct: 118 DLLPGTRAMFAGKVSVFNRKLQLAHPAYELLQGDDGESVESFAGALIPLYPATAKMESWK 177

Query: 167 SVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226
                + ++ +A   +  LPE +       +    + EA   IH P    D    + A+ 
Sbjct: 178 IAKAVQTVLPDARDAVDPLPEALRA----GRGLLPLPEALLKIHRPHTKADI---ADAQA 230

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIAQKILRNIPFSPTKSQESAIKDI 284
           RL +DE    Q+AL   R    +   +P     +G +A    R +PF+ T+ Q    ++I
Sbjct: 231 RLKWDEAFVLQVALARRRHADAQLPAVPRVPRPDGLLAAFDDR-LPFTLTEGQRKVSREI 289

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
             D++  + M R+LQG+VGSGKT+VAL AM A V+AGGQA ++AP  +LAQQH+  I + 
Sbjct: 290 FTDLAADHPMHRLLQGEVGSGKTMVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSITEM 349

Query: 345 T-------------QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
                           T+++  ++TG+M  A RR+AL  +  G+A I+IGTHAL +D +Q
Sbjct: 350 MGELAEGGMLGGSEHATKVV--LLTGSMGAAARRQALLDLVTGEAGIVIGTHALIEDKVQ 407

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++ L LV+VDEQHRFGV+QR  L  K    PH+L+MTATPIPRT+ +T  GD++ S + +
Sbjct: 408 FHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQ 467

Query: 451 KPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEE---------KKE 497
            PAGR PI + ++P       +    ER++  +++G +AY +CP+I +         KK 
Sbjct: 468 LPAGRSPIASHVVPAADKPHFLARAWERVREEVAKGHQAYVVCPRIGDEEDDPKKAAKKS 527

Query: 498 SNFRSVVERFNSLHEHFTSS-----------IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +  +  +R   L     +            + ++HGRM+  DK++VM  F  G   +L+
Sbjct: 528 PDADATADRRPPLAVLDVADQLAKGPLQGLRVEVLHGRMAPDDKDAVMRRFAAGDTDVLV 587

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG++V +A++++I +A+ FG++QLHQLRGRVGRG     C+L+   P +  +  
Sbjct: 588 ATTVIEVGVNVPNATVMVITDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEASAARQ 647

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKH 665
           RL+ +  T DGF ++  DL+QR+EG++LG  QSG    L     + D  ++  AR++A  
Sbjct: 648 RLNAVAATLDGFELSRIDLEQRREGDVLGQAQSGARSSLRVLAVIEDEEIIAEAREEATA 707

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ++  DP LT + G  +R  L     ++  Q++  G
Sbjct: 708 VVAADPGLTGLPG--LRTALDALLDDDKEQYLEKG 740


>gi|311898529|dbj|BAJ30937.1| putative ATP-dependent DNA helicase RecG [Kitasatospora setae
           KM-6054]
          Length = 739

 Score =  346 bits (888), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 226/698 (32%), Positives = 367/698 (52%), Gaps = 80/698 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100
           DLL ++P  +++R     + E+  +  VT+   I + +   F+ +K    ++++ DG  +
Sbjct: 34  DLLHHYPRRYVERGQLTSLDELEVDEHVTVLARIEKVTLIPFRGRKGDRLEVVVTDGRSK 93

Query: 101 ITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----- 152
           ++L+FF   +R+ ++       G++    GK+        +  P Y   + ++ +     
Sbjct: 94  LSLVFFNQGWRQKDLRP-----GQQGLFAGKVGLFNRTRQLASPDYQLIDDEEGSSAAKQ 148

Query: 153 -----FPLIEAVYSLPT---GLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIA 203
                 P+  A   +P+    L V++       AL++ L  + E +  +L  +     + 
Sbjct: 149 FAGRLIPVYPASAQMPSWKLSLCVEM-------ALTKHLADVGEPLPAELRAEHGLIPLP 201

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIA 262
           EA  +IH P    D E    A+ RL +DE    Q+AL   R        +P   V G + 
Sbjct: 202 EALELIHRPHGQADKER---AQNRLRWDEAFVLQVALAQRRAADSALPAVPRRPVPGGVL 258

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
                 +PF+ T  Q +   +I  D++ ++ M R+LQG+VGSGKTLVAL AM A V+ GG
Sbjct: 259 DAFDARLPFTLTDGQRAVCAEIFADLATEHPMHRLLQGEVGSGKTLVALRAMLAVVDTGG 318

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERI 371
           QAV++AP  +LAQQH+  I +   +               V ++TG+M  A RR AL  +
Sbjct: 319 QAVLLAPTEVLAQQHHRSITEMMGDLAEAGMIGGSEIGTRVALLTGSMGAAARRGALLDM 378

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATP 430
           A G+A I+IGTHAL +D +++  L LV+VDEQHRFGV+QR  L  K    PH+L+MTATP
Sbjct: 379 ASGKAGIVIGTHALIEDKVRFADLGLVVVDEQHRFGVEQRDALRAKGEQPPHLLVMTATP 438

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAY 486
           IPRT+ +T  GD++ S + + P+GR PI T ++P     N +    ER++  + +G +AY
Sbjct: 439 IPRTVAMTVFGDLETSVLDQLPSGRSPISTHVVPALEKPNFLVRAWERVREEVGKGHQAY 498

Query: 487 WICPQIEEKKESNFR--------------------------SVVERFNSLHEHFTSS--I 518
            +CP+I ++ E   +                          +VVE    L +   +   +
Sbjct: 499 VVCPRIGDEDEQPAKAGRKKRGDEPEEVGGGADGEERRPPLAVVETAEKLAKGPLAGLRV 558

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I+HGR++   K+ VM  F  G   +L+ATTVIEVG++V +++ ++I +A+ FG++QLHQ
Sbjct: 559 EILHGRLAPDAKDDVMRRFAAGEVDVLVATTVIEVGVNVPNSTAMVIMDADRFGVSQLHQ 618

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG     C+L+   P +  +  RL  +  T DGF ++  DL+QR+EG++LG  Q
Sbjct: 619 LRGRVGRGSAAGLCLLVSDMPAASAARARLDAVAGTLDGFALSRIDLEQRREGDVLGQAQ 678

Query: 639 SGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTS 675
           SG+   L     L D  ++  AR +A  ++  DP L +
Sbjct: 679 SGVKSSLKVLSVLEDEDVIAAARAEATRLVAADPGLAA 716


>gi|255530074|ref|YP_003090446.1| ATP-dependent DNA helicase RecG [Pedobacter heparinus DSM 2366]
 gi|255343058|gb|ACU02384.1| ATP-dependent DNA helicase RecG [Pedobacter heparinus DSM 2366]
          Length = 701

 Score =  346 bits (888), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 244/686 (35%), Positives = 367/686 (53%), Gaps = 28/686 (4%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           F + L   +   +GVG + +  L K +      +     LL Y P  +IDR    K++E+
Sbjct: 2   FASTLDTTIEFLKGVGPRRAELLQKELGIFTYGQ-----LLNYFPFRYIDRTRFYKVNEL 56

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
             E   V I G I+       + ++     L D TG I L++F +  + +     +G+  
Sbjct: 57  DPELPYVQILGRITAKEQIGEKHKKRIVAKLTDETGSIELVWF-QSLKWVDEHIVKGKVY 115

Query: 124 TVTGKIKKLKNRIIMVHP---HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            V GK         + HP   +Y    +   N  L + VY+    L         ++ L 
Sbjct: 116 IVFGKPTVFNGSFSISHPDLENYPRPATVTGNLRL-QPVYNSTEKLKKSFLDSKGIQKLQ 174

Query: 181 RLPV------LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            L +      + E I   +LQK       EA   IH P   KD      A  RL ++EL 
Sbjct: 175 ALLLEQHLHEVKETIPPYILQKYQMILRKEAILNIHFP---KDVASLKKAESRLKFEELF 231

Query: 235 AGQIALLLMRKQFK--KEIGIPINVEGKIAQKILRNI-PFSPTKSQESAIKDILQDMSQK 291
             Q+ LL   KQ +  K  G   +  G+      R I PF  T +Q+  IK+I  D  + 
Sbjct: 232 FIQLQLL-HNKQLRELKFKGHLFDKVGEGVNTFYREILPFKLTNAQKRVIKEIRLDTQRG 290

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            +M R++QGDVGSGKT+VAL++M  A + G QA +MAP  ILA+QHYE I    ++  + 
Sbjct: 291 IQMNRLVQGDVGSGKTVVALMSMLLASDNGYQACMMAPTEILARQHYESIISLLKDRLVK 350

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V I+TG+  +  R +    +  G+ +I++GTHAL +D + +  L +V++DEQHRFGV+QR
Sbjct: 351 VAILTGSSTKKQRTQLHAALEAGEINILVGTHALIEDKVVFKSLGMVVIDEQHRFGVEQR 410

Query: 412 LKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            +L +K A  PH+L+MTATPIPRTL +T  GD+D+S I E PAGRKPI+T  +   +   
Sbjct: 411 ARLWRKNAIPPHILVMTATPIPRTLAMTMYGDLDVSVIDELPAGRKPIETRHLYEGQRLR 470

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSD 527
           +   +K  +++G++ Y + P I+E ++ +   +      +   F      I+I+HG+MS+
Sbjct: 471 MFGFMKQEIAKGRQVYVVYPLIKESEKLDLLHLEAGIEQMGYQFPRPDYQISIVHGKMSN 530

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            DK+  M  F NG  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG 
Sbjct: 531 ADKQYEMQQFINGKSQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGA 590

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S CIL+    LS +   RL  +  T +GF I+E DL+ R  G+I G +QSG+ +  +A
Sbjct: 591 AQSFCILMSGNKLSADGKLRLETMVKTNNGFEISEIDLQLRGPGDITGTQQSGVLELKLA 650

Query: 648 QPELHDSLLEIARKDAKHILTQDPDL 673
                  +L+ AR     +L  DP L
Sbjct: 651 DLAKDQLILQEARNTVIEVLAADPHL 676


>gi|332799410|ref|YP_004460909.1| ATP-dependent DNA helicase RecG [Tepidanaerobacter sp. Re1]
 gi|332697145|gb|AEE91602.1| ATP-dependent DNA helicase RecG [Tepidanaerobacter sp. Re1]
          Length = 675

 Score =  346 bits (888), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 218/631 (34%), Positives = 348/631 (55%), Gaps = 17/631 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99
           D+LFY P  + D    P   +   E    +   I   S+   + R      K+ + DG  
Sbjct: 33  DVLFYFPRDYQDMS--PLTFKQGTEDETGVFPCIVTGSAVSRKTRTGIYITKLPITDGQN 90

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI-FHNSQDVNFPLIEA 158
           +   +FF      ++  F+  +++ + GKIKK      +  P +I F    ++    I  
Sbjct: 91  KGYAVFF--NQPFVEKSFYPNQRLLLIGKIKKNFGVYEISSPEWIKFEKVSNIKIERIRP 148

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           +Y L  G+S +  +  +  A+ +   L E +  D+L + +  S+ EA   IH P   ++F
Sbjct: 149 IYPLSKGISQNFIRNTVKNAIEKFSGLEETLPNDILSRYNLLSLEEAIKNIHFP---QNF 205

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQ 277
                ARER  ++ELL  Q+ + L R   K E     NV   I  +  L  IPF+ T  Q
Sbjct: 206 RMLEKARERFIFEELLLFQLGVNLSRYYSKSEK--RKNVYNTIDLEPFLSGIPFTLTSGQ 263

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           E  +KDI++D+  +  M R++QGDVGSGKT++A  A+  +V+ G Q V+MAP  ILA+QH
Sbjct: 264 EKVLKDIIKDLKSEYIMSRLIQGDVGSGKTVIACAALYLSVKNGFQGVMMAPTEILAEQH 323

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y  +K++     I V+++ G + +  R+K L ++ +G   +++GTHA+ Q+ +++ KL +
Sbjct: 324 YNTLKRFLSPFDINVDMLKGGLAEKERKKLLLKLKNGTVDVLVGTHAIIQEDVEFKKLGM 383

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI DEQHRFGV+QR  L +K   P V++M+ATPIPRT+ +    D+DIS I   PAGR+ 
Sbjct: 384 VITDEQHRFGVKQRENLVKKGHCPDVIVMSATPIPRTIAMALYSDLDISVIDTLPAGRQK 443

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           + T ++  +    + + +   + +G   Y +CP +EE  E    +V +    L + +   
Sbjct: 444 VDTYVVNDSMRKRIYDFMASEVKKGHLVYVVCPAVEE-NELEIINVEQHTAYLRQEYPYL 502

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I ++HG+M   +K+ +++ F     ++L+ATTV+EVG+DV  A+++I+ENAE FGLAQL
Sbjct: 503 QIGMLHGKMKQDEKDKMLNRFLLKKIQVLVATTVVEVGVDVPLATLMIVENAERFGLAQL 562

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGR    S CIL+        +  RL+ L N  DGF I+++DL+ R  GE LG+
Sbjct: 563 HQLRGRVGRSSLKSYCILISGSN-QGTARERLNYLMNCYDGFKISQKDLELRGPGEFLGV 621

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           KQ G  +F  A    +  +L+  +K A  IL
Sbjct: 622 KQHGFFEFKFASFIDNIEILKTTQKLANQIL 652


>gi|125973793|ref|YP_001037703.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum ATCC
           27405]
 gi|281417950|ref|ZP_06248970.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum JW20]
 gi|125714018|gb|ABN52510.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum ATCC
           27405]
 gi|281409352|gb|EFB39610.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum JW20]
 gi|316940014|gb|ADU74048.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum DSM 1313]
          Length = 694

 Score =  346 bits (888), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 237/643 (36%), Positives = 357/643 (55%), Gaps = 23/643 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ--LQKRRPYKILLNDGTGE 100
           DL+ + P  + DR    KI +++E    T  G I    + +   Q    Y+  + D TG 
Sbjct: 37  DLITHFPYDYEDRSNIKKICQLTEGESCTFEGIIMSKVTERKIRQGLTLYQAYIKDDTG- 95

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD-VNFPLIEAV 159
            T++  +     +K V   G      GKI +    + + +P Y     ++  N   I  V
Sbjct: 96  -TIIATWYNQPYIKKVLTVGESYIFYGKIVRGYKTLEVQNPVYEKACKEEHKNTMKIVPV 154

Query: 160 YSLPTGLSVDLFKKIIVEALSRLP-----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           Y     L+ +  + ++  AL  +      VLP W+ K    K     I  AF+ IH PR 
Sbjct: 155 YHATANLTQNTIRTVMQNALELVDGNLEDVLPLWVRK----KYCLCDINYAFSNIHFPRN 210

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFK--KEIGIPINVEGKIAQKILRNIPFS 272
             D +    AR RL ++EL   Q+ LL ++      KE GI      K     + +I F+
Sbjct: 211 DGDIK---NARYRLVFEELFLLQLGLLSVKTVLSDGKE-GIAFAPNRKEMVDFINSIGFT 266

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T +Q+   ++I +DM     M R++QGDVGSGKT+VA +A+A AV++G Q  +M P  I
Sbjct: 267 LTNAQKRVWEEIEKDMESNRVMNRLVQGDVGSGKTIVAALALAKAVKSGYQGAMMVPTEI 326

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QHYE +K       I V ++ G+  +  R + L +I  G+ +I+IGTHAL ++ +++
Sbjct: 327 LAKQHYESLKDIMGKHGINVALLVGSQTKKQRSEILSKIESGEVNIVIGTHALIEEKVKF 386

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            KL LVI DEQHRFGV+QR  L+ K   P +L+MTATPIPRTL L   GD+DIS I E P
Sbjct: 387 SKLGLVITDEQHRFGVRQRAMLSNKGINPDILVMTATPIPRTLALILYGDLDISIIDELP 446

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-H 511
            GRKP+KT  +  +    +   +K  + EG++AY ICP ++E  E   +S ++    +  
Sbjct: 447 PGRKPVKTYAVDNSMRQRINNFIKKQILEGRQAYIICPLVDESDEIEAKSALKTAEKIAK 506

Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           E F    + ++HG+M   +KE VM  F  G   +L++TTV+EVG++V +A+++++ENAE 
Sbjct: 507 EDFKDFRVGLLHGKMPAGEKEEVMQKFLKGEIDILVSTTVVEVGVNVPNATLMVVENAER 566

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FGLAQLHQLRGRVGRG   S CI LY+   S+ +  R+ V++ T DGF+I+E+DL  R  
Sbjct: 567 FGLAQLHQLRGRVGRGPHQSYCI-LYNESKSQIAKERMKVMQETTDGFVISEKDLLIRGP 625

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           GE  G +Q G+P   IA       +L+ A++ A+ IL +D +L
Sbjct: 626 GEFFGTRQHGLPDLKIANLYRDMEILKKAQEAAQEILKRDRNL 668


>gi|284045153|ref|YP_003395493.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283949374|gb|ADB52118.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 707

 Score =  346 bits (887), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 226/646 (34%), Positives = 358/646 (55%), Gaps = 33/646 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPY-KILLNDGTG 99
           DLL + P +   R     ++++ EE   TI   +   +S  +++R  RP  + L+ D TG
Sbjct: 58  DLLGHLPRA---RGEARTVADLVEEETATIVVEVRSITSRPVRRRGMRPLVEALVADQTG 114

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP--HYIFHNSQDVNFPLIE 157
            + + FF +    L   +  G ++ +TG++ +   ++    P    +    Q   +P  E
Sbjct: 115 PLKVTFFNQP--WLVERYRPGTRVMLTGRLGQRSFKVSAHAPTTQQVAGVEQVAQYPASE 172

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            + S+         +  I++ +  LPV        + + +  P    A   +H P  A+D
Sbjct: 173 GISSVQLLAMAQEHRGAIMDTIEPLPVA-------IRRAEELPDRHAALTAVHFPATARD 225

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI--NVEGKIAQKILRNIPFSPTK 275
                  R RLAYDELL  Q+ LL  R + ++    P    V    A+ +   +PF+PT 
Sbjct: 226 ---PVDGRRRLAYDELLLLQLGLLRRRARREQATRAPALDGVRELTARWLEHGLPFAPTG 282

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q+ A++ +  D++ +  M R+L G+VGSGKT+VAL A+  AVE G Q  +MAP   LA+
Sbjct: 283 DQQRAMEQVDADIAHERPMQRLLMGEVGSGKTVVALFALLRAVEQGWQGALMAPTETLAE 342

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QH+  I+  T    + + ++TG+ P A RR  L ++A G+  +++GTHAL +D +++ +L
Sbjct: 343 QHFATIQALTAADTLQIALLTGSTPAARRRDVLGKLASGELALVVGTHALIEDPVRFARL 402

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            +V+VDEQHRFGV+QR  L  KA     PHVL MTATPIPRTL L   GD+D + + E P
Sbjct: 403 GVVVVDEQHRFGVRQRAALDAKAPDGLNPHVLHMTATPIPRTLALVEHGDLDHTALRELP 462

Query: 453 AGRKPIKTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            GR+PI+T +    R  E   ER++  L EG++A+ +CP + E +    ++  E +  L 
Sbjct: 463 RGRQPIETFVAGGERARERAYERIREELREGRQAFVVCPLVGESEALQAKAATEEYERLR 522

Query: 512 --EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
             E     + ++HG+M   +K+  M +F  G   +L+AT+VIEVGIDV +A+++++E+AE
Sbjct: 523 RTEFKDFRVVLMHGQMRPREKQEAMAAFAAGGADVLVATSVIEVGIDVPNATVMLVEDAE 582

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            +G++QLHQLRGR+GRGE  S C LL+ P        RL  L    DGF +A  DL+ R+
Sbjct: 583 RYGISQLHQLRGRIGRGEHASLC-LLFGP----RDSARLKALAEHGDGFELARIDLELRR 637

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           EG+I+G++Q G   + IA     + LLE A   A+ +L  DP+L +
Sbjct: 638 EGDIVGVRQHGDVAYRIAILPDDEDLLERAHARAEALLAADPELEA 683


>gi|160901684|ref|YP_001567265.1| ATP-dependent DNA helicase RecG [Petrotoga mobilis SJ95]
 gi|160359328|gb|ABX30942.1| ATP-dependent DNA helicase RecG [Petrotoga mobilis SJ95]
          Length = 781

 Score =  346 bits (887), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 212/668 (31%), Positives = 369/668 (55%), Gaps = 23/668 (3%)

Query: 10  FAPLSTFR---GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
            APL+  +    VG K +L L+K+            D  +Y P  + DR    KI    E
Sbjct: 99  LAPLTDIKYIKKVGTKRALILNKL------GIFSLKDFFYYPPRDYEDRRKVVKIFNAKE 152

Query: 67  ERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           +  V I G + +    ++ K    Y   + D +G I + FF    + +K+    G K   
Sbjct: 153 DEKVVIIGNVVKSEEVKINKGLTIYNFSVEDDSGVIIVTFF--NQDYVKSYLKRGVKSAF 210

Query: 126 TGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
            GKI+       M  P + +  + +D    ++  VY L  G+     ++I  EA+ +   
Sbjct: 211 YGKIEYSYGMKQMKSPDFQVIESDEDFKSEIL-PVYPLTFGIFQTTMRRIAKEAIQQTYF 269

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA--KDFEWTSPARERLAYDELLAGQIALLL 242
           L E++ ++ +Q+ +   + +    IH P     K+  W S     L Y+E +  ++A++ 
Sbjct: 270 LEEFLPEEFVQEFNLLDLKKRIKGIHFPLSIYHKERSWYS-----LKYEEAILFELAMIY 324

Query: 243 MRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           ++ + K+   G    ++G++ +K L  + F  T++Q+ + ++I +D+     M R+LQGD
Sbjct: 325 LKLKMKEMKKGETKEIKGELTKKFLNTLNFELTQAQKRSYEEIRKDLISPYPMNRLLQGD 384

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+V+ +A+    EAG QA +M P  +LA+Q ++ + K  +   + + ++TG+  +
Sbjct: 385 VGSGKTVVSELAIIDVCEAGYQAAVMNPTSVLAKQQFKKLSKDLEPLGLKIVLLTGDTKE 444

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           + +    E++  G+  +++GTHA+ Q  +++ KL LV++DEQHRFGV QRL+L +K   P
Sbjct: 445 SDKILIKEKLKLGEIDVVVGTHAIIQQDVEFKKLGLVVIDEQHRFGVNQRLELIKKGNHP 504

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L+MTATPIPRTL +T  GD+D+S I E P GR+PIKT++I  +    + E +K  L +
Sbjct: 505 DILVMTATPIPRTLAMTFYGDLDVSLIDEMPKGRRPIKTILIAESNRKSLYEFVKEELDQ 564

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G + +++ P IEE +    ++ +  +  L + F    + ++HGR+S  +K  VMD F   
Sbjct: 565 GNQVFFVYPLIEESEALELKNAISMYEELSKVFEEYKVGLLHGRLSPSEKNDVMDKFVQK 624

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++T+V+EVGID+ DA++++IE+ + FGL+QLHQLRGRVGR ++ S C L+     
Sbjct: 625 EYDILVSTSVVEVGIDIPDATVMVIEHPDRFGLSQLHQLRGRVGRSDKQSYCFLVIDDDA 684

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +    ++++    T DGF +AE DLK R  G+  G++Q G+P+F         +++E +R
Sbjct: 685 NNEIKSKMNSFSKTLDGFEVAEIDLKWRGPGKFFGVEQHGIPEFKFLDLVEDINIIENSR 744

Query: 661 KDAKHILT 668
           K  +  L 
Sbjct: 745 KKVERFLA 752


>gi|19552544|ref|NP_600546.1| RecG-like helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62390208|ref|YP_225610.1| RecG-like helicase [Corynebacterium glutamicum ATCC 13032]
 gi|21324094|dbj|BAB98719.1| RecG-like helicases [Corynebacterium glutamicum ATCC 13032]
 gi|41325544|emb|CAF20024.1| RecG-like helicase [Corynebacterium glutamicum ATCC 13032]
          Length = 707

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 219/638 (34%), Positives = 348/638 (54%), Gaps = 56/638 (8%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101
           +LL +H   +        I + +E  +VTI G ++    S+    +  YK+ +   T  I
Sbjct: 33  ELLRHHVRKYSHHGSGVGIGDATEGDLVTIVGQVAFAKQSYTQSGKMLYKVTVLTETERI 92

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI----------------- 144
            + FF  K   +  +  EG +   TGK+K  +N   + HP +I                 
Sbjct: 93  GISFFGAK--HIPRLLPEGTRALFTGKVKFFRNEPQLSHPEFIVIPDPGSGRRLTATGGM 150

Query: 145 -----FHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ 195
                + + ++V   L++     +Y+    ++       +   L  +PV+ E +    + 
Sbjct: 151 KSLAAYGDVEEVALRLVDREYIPIYAGTATMTTWRIMAAVQRVLETMPVIKEPLS---VV 207

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255
            +  PS  EA   IH+P      E  S    RL Y+E L+    + + R   K     P+
Sbjct: 208 PEGMPSFDEAIRGIHDP----GHESPSTFINRLKYNEALSLATVMAIRRADTKNRKAPPM 263

Query: 256 NVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
               K  Q +L + + F  T  Q+  I++I  D+ Q+  M R+LQG+VGSGKT+V+LIAM
Sbjct: 264 PRALKGHQHMLIDALNFQLTVGQKQVIREISADIEQRVPMSRLLQGEVGSGKTIVSLIAM 323

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRKALERIA 372
             A+++G Q  ++AP  +LA QH   + K   +  + + ++  TG+MP   +++AL  I 
Sbjct: 324 LQAIDSGRQCAMLAPTEVLATQHARSLSKTLDDAGLDINVVLLTGSMPTGAKKEALLEII 383

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTAT 429
            G A I++GTHAL QD+++++ L LV+VDEQHRFGV+QR +L  K      PH+L+MTAT
Sbjct: 384 SGDADIVVGTHALIQDTVEFFDLGLVVVDEQHRFGVEQRDQLRTKGREGLTPHLLVMTAT 443

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAY 486
           PIPRT+ +T  GD+ +S + E P GR+PI+T +IP ++   +    ER+   +  G++AY
Sbjct: 444 PIPRTIAMTVFGDLAVSTLRELPGGRRPIQTSVIPDHKPGWVKRGWERIGEEVLAGRQAY 503

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP+IE +       V+E    L E      ++ ++HGRM    K+SVM  F  G   +
Sbjct: 504 VVCPRIEGEG-----GVLEIHAYLSEQVYPGLNVGMLHGRMDTDLKDSVMQEFAQGEIDI 558

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+ATTVIEVGIDV +A++++I  AE FG++Q+HQLRGRVGRG+  S C+L  H    ++S
Sbjct: 559 LVATTVIEVGIDVANATVMLIREAERFGVSQIHQLRGRVGRGQHDSLCLL--HTTFDEDS 616

Query: 605 --YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
               RL+ +  T DGF ++E DL+ R+EG++LG +QSG
Sbjct: 617 PQGQRLAAISTTTDGFQLSELDLQVRQEGDVLGTRQSG 654


>gi|19704981|ref|NP_602476.1| ATP-dependent DNA helicase recG [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19712887|gb|AAL93775.1| ATP-dependent DNA helicase recG [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 689

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 227/608 (37%), Positives = 348/608 (57%), Gaps = 20/608 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEI 101
           DL++Y P ++ DR    KI E+     V +   +    +  ++  ++  K ++ DGTG +
Sbjct: 38  DLIYYFPRAYDDRTNIKKIGELKFNEYVVLKATVMSAVNLTVRSGKKIVKAMVTDGTGIM 97

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160
            +L+F      +K     G +    G+ KK      +++P Y +F   Q V+   I  +Y
Sbjct: 98  EILWF--GMPYIKKSLKIGEEYLFIGQTKK-SAVFQLINPEYKLFSGQQKVSENEILPIY 154

Query: 161 SLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           S    ++ +  +K++ + L   L    E I K L+++        A   IH P   K+ E
Sbjct: 155 SSNKNITQNSLRKLVEKFLVNFLNYFEENIPKKLIKEYKIMERKSAIKNIHYPVSMKEIE 214

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQ 277
               A+ R A +ELL  ++ +L  R   +        VEGK    ++ L  + F+ T +Q
Sbjct: 215 ---EAKRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKVREFLSQLTFNLTNAQ 271

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +  IK+I  ++S    + R++QGDVGSGKT+VA++ +    E G Q  +MAP  ILA QH
Sbjct: 272 KKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGYQGALMAPTEILANQH 331

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y  IK+  +   + VE++T ++    + + L+ IA+G   I+IGTH+L +D + + KL L
Sbjct: 332 YLGIKERLEQIGLRVELLTSSIKGKKKNEILDGIANGDIDIVIGTHSLIEDDVIFKKLGL 391

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +++DEQHRFGV QR KL +K    ++L+M+ATPIPR+L L+  GD+D+S I E P GR P
Sbjct: 392 IVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGDLDLSIIDELPPGRTP 451

Query: 458 IKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           IKT  I     DE +E++   +    ++G +AY++ P IE   +   +SV +    +   
Sbjct: 452 IKTKWIA---NDEDLEKMYNFIYKKVNDGNQAYFVAPLIETSDKMALKSVDKVSEEIERK 508

Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           F++  I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  ++I+ I NAE FG
Sbjct: 509 FSNKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFG 568

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+ LHQLRGRVGRG + S C L+ +   ++NS  RLS+++ TEDGF IAEEDLK R  GE
Sbjct: 569 LSALHQLRGRVGRGSKQSYCFLISNST-TENSKQRLSIMEETEDGFRIAEEDLKLRNSGE 627

Query: 633 ILGIKQSG 640
           I G++QSG
Sbjct: 628 IFGLRQSG 635


>gi|160915456|ref|ZP_02077667.1| hypothetical protein EUBDOL_01464 [Eubacterium dolichum DSM 3991]
 gi|158432576|gb|EDP10865.1| hypothetical protein EUBDOL_01464 [Eubacterium dolichum DSM 3991]
          Length = 550

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 192/516 (37%), Positives = 302/516 (58%), Gaps = 8/516 (1%)

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           I  VY+L  G++    +K I +A + +   + ++I   L QK      ++A   IH+P  
Sbjct: 14  IHPVYNLKEGITQKELEKYIDKAYALMKEAITDFIPPSLRQKYRLIERSQALLYIHHPY- 72

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSP 273
             D      +   L Y+E L  Q+A+  ++ Q  K + G     E +   ++   + F  
Sbjct: 73  --DENSLKQSLRHLKYEEFLKFQLAMRCIKDQESKLVKGQGKQFEREEVMRLKHTLAFEL 130

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           ++ QE  I++I+ D++ +  M R+LQGDVG GKT+VA   M A + A  QA +MAP  IL
Sbjct: 131 SEDQEKVIEEIMDDLASEKIMYRLLQGDVGCGKTVVAAFGMYACILAHKQAALMAPTEIL 190

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH + ++   ++  I+VE + G++P   +   LER+   +  +++GTH LFQ+ + +Y
Sbjct: 191 AKQHTDNLRAMFKDMDIVVEGLYGSLPAQDKASILERLKTNEIDLLVGTHTLFQEQVDFY 250

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L +V+ DEQHRFGV+QR +L  K      LLM+ATPIPRTL L+  GD+++S I + P 
Sbjct: 251 DLGMVVADEQHRFGVEQRRRLLAKGDKVDFLLMSATPIPRTLALSLYGDMEVSSIHQLPK 310

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GR PI T ++    +  ++E + + + EG + Y +CP IE  ++   R+V++ +  +   
Sbjct: 311 GRMPITTKLVASKSMAPILEEVLMYIDEGNQCYVVCPAIENNEDYKMRNVMDIYKGMQAS 370

Query: 514 FTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 I ++HGRMS  +K+ VM  F  GT ++L+ TTVIEVG+DV +A+I+II +A  F
Sbjct: 371 IGRKYRIGLLHGRMSAQEKDQVMREFVAGTLQILVTTTVIEVGVDVKNANIMIIYDAHRF 430

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+Q+HQLRGRVGRG++   C LL        S  RL   + T DGF +A  DL+ R  G
Sbjct: 431 GLSQIHQLRGRVGRGDKAGYCYLLSDTK-DMESKKRLQACEKTNDGFELARIDLELRGPG 489

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +ILG +QSG+P F++       ++LE+AR+DA  IL
Sbjct: 490 DILGTRQSGVPGFILGDVIQDANILEVAREDACAIL 525


>gi|183219772|ref|YP_001837768.1| ATP-dependent DNA helicase RecG [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189909907|ref|YP_001961462.1| ATP-dependent DNA helicase RecG [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774583|gb|ABZ92884.1| ATP-dependent DNA helicase, recG-related [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778194|gb|ABZ96492.1| ATP-dependent DNA helicase RecG [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 686

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 238/681 (34%), Positives = 374/681 (54%), Gaps = 35/681 (5%)

Query: 13  LSTFRGVG-KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           LS  +G+G K+ ++ L   I+        + +LL Y P  ++DR++   I  + +  +VT
Sbjct: 8   LSNLKGIGPKRKTVLLEHGIST-------YYELLTYFPRRYLDRNFTKDII-LKQGDVVT 59

Query: 72  ITGYISQHSSFQLQKRR---PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           + G I        +K R    ++ L N+    I L+FF R     + +F   +K+ V+GK
Sbjct: 60  LLGSIVDSYIVHGKKSRLLVGFRTLNNE---RINLVFF-RGVNFFQKLFAIDKKVVVSGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP----------TGLSVDLFKKIIVEA 178
           ++  +   I+ HP Y F +  D     I A   +P           GL     +K+I + 
Sbjct: 116 LEYFRGYQIL-HPEYEFLSDADDPEDSIHAGRIIPLYPSTEALKEDGLDSKGLRKLIHQV 174

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L     + E +    ++K+      EAF  IH P      E    AR+R AY+E    Q 
Sbjct: 175 LE-AGTISENLPSKFIKKRKLLGRDEAFRNIHFP---DTMETVQIARKRFAYEEFYYFQR 230

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            LL  +++ +K   +   +    ++  L +N+PF  T+ Q+SA+  IL   +  +    +
Sbjct: 231 LLLYKQRERQKVKRLLWPLPKSPSRTNLEKNLPFELTEDQKSAVTTILSKTNSDSPSAFL 290

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-VEIIT 356
           LQGDVGSGKT+ AL+     ++   Q V +AP  ILA+QHY+ I K+  N   + +E++ 
Sbjct: 291 LQGDVGSGKTITALLVGLHYIDNHIQVVFLAPTEILARQHYQTIYKFMGNMPFLGIELLL 350

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G   +  R + L RI  G+++IIIGTH+L Q+ + +  L LV++DEQH+FGV QR  +  
Sbjct: 351 GGENKKTRAEKLSRIKTGESNIIIGTHSLLQEDVIFSDLGLVVIDEQHKFGVDQRETIRA 410

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K   P +L MTATPIPRTL LT  GD+ +  I  KP GRKPI T     +R   V   ++
Sbjct: 411 KGKNPDILAMTATPIPRTLCLTLYGDLTLVNIKTKPKGRKPIDTRWYKEDRRAGVYNSIR 470

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVM 534
             +S G++ Y + P +EE ++ +  S    + +L         I ++HG+M  ++KESVM
Sbjct: 471 KYVSSGRQCYIVYPLVEESEKVDLESCTVAYENLRTTVFPDLKIGLLHGKMKSVEKESVM 530

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + FK+G  ++L+ TTV+EVG+DV +A+I+++E+AE FG++QLHQLRGRVGR +  S CIL
Sbjct: 531 EKFKSGEIQILVTTTVVEVGVDVPNATILVVEHAERFGISQLHQLRGRVGRSDLESFCIL 590

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +    +S+    RL  L  + DG+ +AE+DL  R  GE+LG+KQSG+P+F IA   +   
Sbjct: 591 MTGDSISEEGRDRLEALVASNDGYYLAEKDLAIRGPGELLGVKQSGLPEFKIADLVVDRE 650

Query: 655 LLEIARKDAKHILTQDPDLTS 675
           LL+ A++DA  I   DP+  S
Sbjct: 651 LLDEAKEDASSIPLDDPNEVS 671


>gi|296329235|ref|ZP_06871736.1| DNA helicase RecG [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296153591|gb|EFG94408.1| DNA helicase RecG [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 689

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 227/608 (37%), Positives = 348/608 (57%), Gaps = 20/608 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEI 101
           DL++Y P ++ DR    KI E+     V +   +    +  ++  ++  K ++ DGTG +
Sbjct: 38  DLIYYFPRAYDDRTNIKKIGELKFNEYVVLKATVMSAVNLTVRSGKKIVKAMVTDGTGIM 97

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160
            +L+F      +K     G +    G+ KK      +++P Y +F   Q V+   I  +Y
Sbjct: 98  EILWF--GMPYIKKSLKIGEEYLFIGQTKK-SAVFQLINPEYKLFSGQQKVSENEILPIY 154

Query: 161 SLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           S    ++ +  +K++ + L   L    E I K L+++        A   IH P   K+ E
Sbjct: 155 SSNKNITQNSLRKLVEKFLVNFLNYFEENIPKKLIKEYKIMERKSAIKNIHYPVSMKEIE 214

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQ 277
               A+ R A +ELL  ++ +L  R   +        VEGK    ++ L  + F+ T +Q
Sbjct: 215 ---EAKRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKVREFLSQLTFNLTNAQ 271

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +  IK+I  ++S    + R++QGDVGSGKT+VA++ +    E G Q  +MAP  ILA QH
Sbjct: 272 KKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGYQGALMAPTEILANQH 331

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y  IK+  +   + VE++T ++    + + L+ IA+G   I+IGTH+L +D + + KL L
Sbjct: 332 YLGIKERLEQIGLRVELLTSSIKGKKKNEILDGIANGDIDIVIGTHSLIEDDVIFKKLGL 391

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +++DEQHRFGV QR KL +K    ++L+M+ATPIPR+L L+  GD+D+S I E P GR P
Sbjct: 392 IVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGDLDLSIIDELPPGRTP 451

Query: 458 IKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           IKT  I     DE +E++   +    ++G +AY++ P IE   +   +SV +    +   
Sbjct: 452 IKTKWIA---NDEDLEKMYNFIYKKVNDGNQAYFVAPLIETSDKMALKSVDKVSEEIERK 508

Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           F++  I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  ++I+ I NAE FG
Sbjct: 509 FSNKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFG 568

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+ LHQLRGRVGRG + S C L+ +   ++NS  RLS+++ TEDGF IAEEDLK R  GE
Sbjct: 569 LSALHQLRGRVGRGSKQSYCFLISNST-TENSKQRLSIMEETEDGFRIAEEDLKLRNSGE 627

Query: 633 ILGIKQSG 640
           I G++QSG
Sbjct: 628 IFGLRQSG 635


>gi|256028462|ref|ZP_05442296.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D11]
 gi|289766383|ref|ZP_06525761.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D11]
 gi|289717938|gb|EFD81950.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D11]
          Length = 689

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 227/608 (37%), Positives = 348/608 (57%), Gaps = 20/608 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEI 101
           DL++Y P ++ DR    KI E+     V +   +    +  ++  ++  K ++ DGTG +
Sbjct: 38  DLIYYFPRAYDDRTNIKKIGELKFNEYVVLKAIVMSAVNLTVRSGKKIVKAMVTDGTGIM 97

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160
            +L+F      +K     G +    G+ KK      +++P Y +F   Q V+   I  +Y
Sbjct: 98  EILWF--GMPYIKKSLKIGEEYLFIGQTKK-SAVFQLINPEYKLFSGQQKVSENEILPIY 154

Query: 161 SLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           S    ++ +  +K++ + L   L    E I  +L+++        A   IH P   K+ E
Sbjct: 155 SSNKNITQNSLRKLVEKFLVNFLNYFEENIPDELIKEYKIMERKSAIKNIHYPVSMKEIE 214

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQ 277
               A+ R A +ELL  ++ +L  R   +        VEGK    +  L  + F+ T +Q
Sbjct: 215 ---EAKRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKVKNFLSQLTFNLTNAQ 271

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +  IK+I  ++S    + R++QGDVGSGKT+VA++ +    E G Q  +MAP  ILA QH
Sbjct: 272 KKLIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGYQGALMAPTEILANQH 331

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y  IK+  +   + VE++T ++    + + LE IA+G   I+IGTH+L +D++ + KL L
Sbjct: 332 YLGIKERLEKIGLRVELLTSSIKGKKKNEILEGIANGDIDIVIGTHSLIEDNVVFKKLGL 391

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +++DEQHRFGV QR KL +K    ++L+M+ATPIPR+L L+  GD+D+S I E P GR P
Sbjct: 392 IVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGDLDLSIIDELPPGRTP 451

Query: 458 IKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           IKT  I     DE +E++   +    + G +AY++ P IE   +   +SV +    +   
Sbjct: 452 IKTKWIA---NDEDLEKMYDFIYKKVNAGNQAYFVAPLIETSDKMELKSVDKVSEEIERK 508

Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           F++  I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  ++I+ I NAE FG
Sbjct: 509 FSNKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFG 568

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+ LHQLRGRVGRG + S C L+ +  +++NS  RLS+++ TEDGF IAEEDLK R  GE
Sbjct: 569 LSALHQLRGRVGRGSKQSYCFLISN-SITENSKQRLSIMEETEDGFRIAEEDLKLRNSGE 627

Query: 633 ILGIKQSG 640
           I G++QSG
Sbjct: 628 IFGLRQSG 635


>gi|150016042|ref|YP_001308296.1| ATP-dependent DNA helicase RecG [Clostridium beijerinckii NCIMB
           8052]
 gi|149902507|gb|ABR33340.1| ATP-dependent DNA helicase RecG [Clostridium beijerinckii NCIMB
           8052]
          Length = 677

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 237/670 (35%), Positives = 370/670 (55%), Gaps = 28/670 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEISE 66
           +++ +ST +GVG K +    K+  CG  N    +D+L Y P    F+D +   + +   E
Sbjct: 3   IYSNISTLKGVGPKAT---EKLNRCGIFN---ILDILLYFPRDYEFVDSNVEFE-NITGE 55

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITV 125
           ++ +     I   S  + +  +    +  D  G +++  +F ++   +KN F  G    +
Sbjct: 56  DKQILKCKVIRFRSDVKTKTGKLLTTVEFDYNGHKVSGKWFNQR--YIKNSFKIGEIYNL 113

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            GK K++ N + +V+P  +    + ++  +I   Y L   +S  LF+K+I E LS++ V 
Sbjct: 114 MGKFKRVGNTLEVVNP--MVTCEEAISNEIIPK-YPLKGDISNKLFEKLINEILSKMTV- 169

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA-GQIALLLMR 244
            E + +++L K    S+ EA   +H P   +  E    A  RL + EL       LLL  
Sbjct: 170 KENLPQNILDKYYLISLNEAIRSVHFPDNKEVLE---KAIIRLKFQELFTYSLKLLLLKH 226

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           K  K + GI      +++      +PF  T +Q   I++IL+D    + M R++QGDVGS
Sbjct: 227 KIKKNKNGILFQWVDELSL-FKEKLPFPLTNAQTRVIREILRDQKSNSSMNRLIQGDVGS 285

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++ALIA+   ++   Q   MAP  ILA QH+E  +K      I +E++TG      +
Sbjct: 286 GKTIIALIAIFNVIKNDYQCAFMAPTEILANQHFEEARKVYDEFNIEIELLTGTTSVKEK 345

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           ++  ERI   +  ++IGTHALFQD +++ KL L++ DEQHRFGV+QR KL  K      L
Sbjct: 346 QRIKERIRTKEPILVIGTHALFQDDVEFGKLGLIVTDEQHRFGVEQRSKLINKGKRADCL 405

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL L    D+D+S I E P GRK I T     N+ D   +     + +G++
Sbjct: 406 VMTATPIPRTLALYLYSDLDVSIIDELPPGRKKIDTRFYADNQRDIAYDLAYDEIKKGRQ 465

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP IEE ++    SV   +N L         + I+HG+M   +K+ ++  FKN   
Sbjct: 466 VYIVCPLIEEDEKEELNSVETLYNKLTSGIFKELKVEILHGKMKGSEKDEIIKRFKNNEV 525

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +LI+TTVIEVG++V +AS++I+ENAE FGL+QLHQLRGRVGRG+  S CIL+     S 
Sbjct: 526 NVLISTTVIEVGVNVPNASVMIVENAERFGLSQLHQLRGRVGRGQYSSYCILIAKAK-SN 584

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL--LEIAR 660
            +  R+ ++    DGFLI+E+DL+ R  GE+ G KQSG   F++A   L+D +  L  A+
Sbjct: 585 VTKKRMQIMTECSDGFLISEKDLELRGAGEMFGKKQSGDEGFVLAN--LYDDMKILRCAK 642

Query: 661 KDAKHILTQD 670
            +A ++L  +
Sbjct: 643 LEANNMLQNE 652


>gi|320536875|ref|ZP_08036868.1| ATP-dependent DNA helicase RecG [Treponema phagedenis F0421]
 gi|320146258|gb|EFW37881.1| ATP-dependent DNA helicase RecG [Treponema phagedenis F0421]
          Length = 684

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 215/656 (32%), Positives = 341/656 (51%), Gaps = 47/656 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           D+L   P ++ DR     +++    + + +   +     F   + R  K+++ D  G   
Sbjct: 34  DILLLWPRTWEDRTRVDFLADYDSVQKLQVRVKVVGQEWFGFGRMRTLKLIIQDECGSFA 93

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL------- 155
            L  + +   L+N F  G +  V G              +Y +   Q   F +       
Sbjct: 94  ELACFNRN-FLENAFPVGAEAVVYGSF------------YYKYGKLQSSAFEIEKPESAE 140

Query: 156 --IEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
             I  VY L  GL     +K+I  AL +    +   +  ++++K   P+  +    +H+P
Sbjct: 141 QKILPVYPLTQGLGQAKLRKLIQTALRQYARGIDSELPAEVMEKYGLPTKQQILFFMHSP 200

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN---- 268
           +  ++   T  AR  L ++E    Q  L     Q + ++      E + A    R     
Sbjct: 201 QTVQE---TEQARHALIFEEFFIFQTELGKRSIQRRGKLPYFSETESEFASSKPRQPVLT 257

Query: 269 ---------IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                    +PF+ T+ Q +   ++ +D+     M R++QGDVGSGKTL A +A    +E
Sbjct: 258 QLQQQLLKRLPFALTEDQRTVTAEVNEDLEGTEPMARLIQGDVGSGKTLTAFLACLNVIE 317

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            GGQA  +AP  +LA+QH E   K  +   + +  +TGN+    R   L  +A G   ++
Sbjct: 318 KGGQAAFLAPTELLARQHAENAAKLLKPLGVRLAFLTGNVKAKGRSHLLAALADGSIDLV 377

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------APHVLLMTATPIP 432
           +GTHALF   + Y  L L +VDEQHRFGV QR  + QK          PH L+M+ATPIP
Sbjct: 378 LGTHALFSSGVSYKNLRLAVVDEQHRFGVLQRSAIIQKGVEGSKEKKPPHFLMMSATPIP 437

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL L+  GD+DIS I   P GRKP+ T +    + ++V   +   ++ G++AY++ P I
Sbjct: 438 RTLALSVFGDLDISVIKTMPEGRKPVITYVASQAKAEKVYTFIGKEIAAGRQAYFVYPLI 497

Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           E+ +  + +S  + +  L + F    +A+IH ++ + +++ +M+ FK G   +L AT+VI
Sbjct: 498 EDSESLSLKSAEQMYQYLQQGFPRHKVALIHSKIPENEQKEIMEEFKAGKIHILAATSVI 557

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           EVG+DV +A+ ++IE++E FGL+ LHQLRGRVGRG E S C L+Y   ++ +  TRLS++
Sbjct: 558 EVGVDVPNATCMVIEHSERFGLSALHQLRGRVGRGGEQSYCFLMYGKNITNDGKTRLSIM 617

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           K T DGF+IAEEDLK R  G+I GI+QSG   F +A P    +LL+ AR+ A  IL
Sbjct: 618 KETTDGFVIAEEDLKLRGPGDIGGIEQSGYLGFNLADPMRDYTLLQKARQAAFAIL 673


>gi|297617077|ref|YP_003702236.1| ATP-dependent DNA helicase RecG [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144914|gb|ADI01671.1| ATP-dependent DNA helicase RecG [Syntrophothermus lipocalidus DSM
           12680]
          Length = 687

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 213/645 (33%), Positives = 351/645 (54%), Gaps = 23/645 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEI 101
           D+L++ P  + D      + +I   ++ T+ G +   S +   +     K  L DG   I
Sbjct: 36  DMLWHVPRHYFDWAAAKGLDQIRVGQVNTVKGIVKSISLTKSARGTVVVKAWLEDGNAGI 95

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVY 160
             ++F ++   +K V   G  I VTGK+  ++    +    Y   NS    + + I   Y
Sbjct: 96  VAVWFNQR--YIKQVLHPGIPILVTGKVNMIRGNPELWVSQYETLNSGSPAYRVGIVPFY 153

Query: 161 SLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
               GL+  + + I  + +       P+ I+    ++     I  A   +H P+   D E
Sbjct: 154 PSTEGLNQRVLRSIAYQVVQEYAEKYPDIIDPVARKRIGLIDIESAIRNLHFPKNVLDVE 213

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEI---GIPINVEGKIAQKILRNIPFSPTKS 276
              PAR RLA++ELL  Q  +  ++ + + E+   G+      ++ ++++  +PF  TK+
Sbjct: 214 ---PARRRLAFEELLLWQWNVRQLKNRARGELKGRGVAHLGGDELVEQVISALPFQLTKA 270

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   + +I  D+++ + M R+LQGDVGSGKT+VA +A A     G Q   MAP  ILA Q
Sbjct: 271 QRRVLAEIRDDLTRPDPMNRLLQGDVGSGKTVVAALAAAKMAGDGYQIAFMAPTEILAVQ 330

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY  + +      I V ++TG  P + +RK +E     +  I++GTHAL  D++++ +L 
Sbjct: 331 HYNSLLRLVSRVPIRVALLTGKTPYSEKRKIVEMAKRHELDILVGTHALITDTVEFARLG 390

Query: 397 LVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
           LV++DEQ RFGV+QR  L  K    P  L+M+ATPIPRTL L   GD+D+S I E P GR
Sbjct: 391 LVVIDEQQRFGVKQRASLVGKGKGYPDTLVMSATPIPRTLALALCGDMDVSIIDEIPPGR 450

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           K ++T  I      ++ + ++  +++G++ Y +CP +EE ++ +  +      SL +   
Sbjct: 451 KRVRTFFITEAAKSKLYQFIRRQVNKGRQVYIVCPLVEESEKQDLLAA----TSLQQELA 506

Query: 516 SS------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           +       + ++HGRM   +KE+V + F+ G   +L+ T+VIEVGIDV +A+++++E+AE
Sbjct: 507 NCVFPELRVGLLHGRMKSPEKEAVAERFRQGLIDILVTTSVIEVGIDVANATVMVVEHAE 566

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            FGLAQLHQLRGRVGRG + S CIL+  P  ++ +  RL +++ T DGF IA  DL+ R 
Sbjct: 567 RFGLAQLHQLRGRVGRGGDQSYCILVGDPK-TEEARARLKLMETTNDGFEIARADLEMRG 625

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            G+  G++Q G+P+F +A       LL+   ++    LT + DL 
Sbjct: 626 PGDFWGVRQHGLPQFRVADLGRDTHLLKTVHREIAAGLTLNEDLA 670


>gi|311742949|ref|ZP_07716757.1| DNA helicase RecG [Aeromicrobium marinum DSM 15272]
 gi|311313629|gb|EFQ83538.1| DNA helicase RecG [Aeromicrobium marinum DSM 15272]
          Length = 705

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 210/657 (31%), Positives = 348/657 (52%), Gaps = 42/657 (6%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ---KRRPYKILLNDGTG 99
           DLL ++P  +++      + ++ E   VT+   +    +F+     +R   ++++ D TG
Sbjct: 34  DLLRHYPRRYLEVGALTPLGDLVEGMHVTVMARVKSAQNFRFGPGGRRTRSEVVVTDDTG 93

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-----FP 154
           E++L FF    +  +     G+     G +   +NR+ +  P Y     +        +P
Sbjct: 94  ELSLTFF---NQAWRGTMQPGQVGLFAGVVGSFRNRLQLTQPDYDAVGDRLARGVVPIYP 150

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
               V S     +V     ++V+       LPE + + +  +  F  +AEAF  +H P  
Sbjct: 151 ATAKVSSWAIERAVGTCLDVVVD-------LPETLPESVRTEHGFVPVAEAFEAVHRP-- 201

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSP 273
             D      A+ R  ++E    Q  L   R+   +          G +  +    +PF+ 
Sbjct: 202 -HDVAAAYRAQARFRFEEAFVIQTVLAQRRRAAAEASATARPPRTGGLLDRFDARLPFAL 260

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q      I  D++  + M R+LQG+VGSGKT+VAL AM   V+AGGQAV++AP  +L
Sbjct: 261 TAGQLEVAAQIEADLAAPHPMHRLLQGEVGSGKTVVALRAMLQVVDAGGQAVLLAPTEVL 320

Query: 334 AQQHYEFIKKYTQN-----------TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           A QH+  I     +               V ++TG+M    R+ +L     G+A I++GT
Sbjct: 321 AAQHHRSISSMLGDLAASGLLGGAEGATRVRLLTGSMGAKARQASLLDAVSGEAGIVVGT 380

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLG 441
           HAL  D + +  L LV+VDEQHRFGV+QR  L  +A T PHVL+MTATPIPRT+ +T  G
Sbjct: 381 HALLSDGVDFADLGLVVVDEQHRFGVEQRAALVDRAATRPHVLVMTATPIPRTVAMTVFG 440

Query: 442 DIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQI-EEKK 496
           D++ S + E PAGR+PI+T ++P+      +D V +R++  +  G++ Y +  +I E + 
Sbjct: 441 DLETSVLRELPAGRQPIQTTVVPVADRPAWLDRVWQRVREEVGRGRQGYVVVSRIGESEA 500

Query: 497 ESNFRSVVERFNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            +  RS+ + F  L         +  +HGR+   +K++VM +F  G   +L+ATTVIEVG
Sbjct: 501 TTTTRSLTDLFAELEVGPLLGLRLGFLHGRLPADEKDAVMRAFAAGDVDVLVATTVIEVG 560

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +A+++++ +A+ FG++QLHQLRGRVGRG+E   C+L+     + ++  RL  + +T
Sbjct: 561 VDVPNATVMVVMDADRFGMSQLHQLRGRVGRGQEPGLCLLVTTTDAASSAAERLVAVAST 620

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQD 670
            DGF ++  D++ R EG++LG +QSG    L +     H+S++  AR  A+ ++  D
Sbjct: 621 TDGFELSRLDVELRSEGDVLGTRQSGFRSSLRLLSVVRHESVITEARTAAEAVVAAD 677


>gi|121609293|ref|YP_997100.1| ATP-dependent DNA helicase RecG [Verminephrobacter eiseniae EF01-2]
 gi|121553933|gb|ABM58082.1| ATP-dependent DNA helicase RecG [Verminephrobacter eiseniae EF01-2]
          Length = 750

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 228/677 (33%), Positives = 348/677 (51%), Gaps = 54/677 (7%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           R IDL  + P  + D      ++     ++V I   +      QL+ RR   + + D TG
Sbjct: 71  RDIDLALHLPLRYEDETRITALASARNGQVVQIEATVLA-CEVQLRPRRQLLVQVEDATG 129

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEA 158
              L FF       K +   G ++ + G++K       M+HP +     +    P  +  
Sbjct: 130 ACQLRFFSFYPSHQKTLAV-GTRLRIRGEVKGGFWGRQMLHPAFRVAGGE---LPAALTP 185

Query: 159 VYSLPTGLSVDLFKKIIVEALSRL-----------PVLPEWIEKDLLQKKSFPSIAEAFN 207
           VY    GL     ++ +V AL R            P    + ++D  Q++ F S+ EA  
Sbjct: 186 VYPSTAGLPQPYLRRAVVSALGRADLSDTLPPGAQPPCAHYTDEDG-QQRLF-SLREALT 243

Query: 208 IIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL------------LMRKQFKKEI 251
            +H+PR         + + PA +RL  +ELLA Q++              ++ +Q   + 
Sbjct: 244 FLHHPRPDVALSTLQDHSHPAWQRLKAEELLAQQLSQQQSRRERARLRAAVLHEQPAADG 303

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
             P+       +++L  +PF  T +Q     +I  D++++  M R+LQGDVGSGKT+VA 
Sbjct: 304 SAPLQ------RQLLAVLPFDLTAAQRRVGAEIAADLARERPMHRLLQGDVGSGKTVVAA 357

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +A   A++AG Q  +MAP  ILA QH+     +++         V  + G   +  R   
Sbjct: 358 LAACQAIDAGWQCALMAPTEILAGQHFAKMIGWLEPLLAARGRCVAWLVGGQKKKERLAM 417

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHV 423
              +  G A +++GTHA+ Q+ +Q+  L L I+DEQHRFGV QRL L QK  A    PH+
Sbjct: 418 RALVESGAAALVVGTHAVIQEQVQFKNLALAIIDEQHRFGVAQRLALRQKLAAHGMEPHL 477

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL ++   D+DIS I + P GR PI T +I  +R DEVI R+   +  G+
Sbjct: 478 LMMSATPIPRTLAMSYYADLDISVIDQLPPGRTPIVTKLIADSRRDEVIARIGAQVQAGR 537

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + YW+CP IEE +  +  +       L        + ++H RM   +K++VM  F +   
Sbjct: 538 QVYWVCPLIEESEALDLSNATATHADLSAALPGVMVGLLHSRMGSAEKKAVMAQFSDARM 597

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--- 599
            +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY      
Sbjct: 598 GVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYATNDSG 657

Query: 600 -LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            + +++  RL  +  T DGF IA  DL+ R  GE LG +QSG      A       LLE 
Sbjct: 658 RVGQSAKERLRAMVETSDGFEIARRDLEIRGPGEFLGARQSGDALLRFADLATDGHLLEW 717

Query: 659 ARKDAKHILTQDPDLTS 675
           AR+ A  +L + P L +
Sbjct: 718 ARELAPVMLDRHPQLAA 734


>gi|262401992|ref|ZP_06078557.1| transcription-repair coupling factor [Vibrio sp. RC586]
 gi|262351964|gb|EEZ01095.1| transcription-repair coupling factor [Vibrio sp. RC586]
          Length = 418

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 185/397 (46%), Positives = 259/397 (65%), Gaps = 6/397 (1%)

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           + +I  D+++ + M+R++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH   
Sbjct: 2   VAEIEADLAKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALN 61

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
             ++ +   I V  + G +    R   L RIA G+  +++GTHALFQ+ + +  L LVI+
Sbjct: 62  FAQWLEPMGIQVGWLAGKLKGKARETELARIAGGEVKMVVGTHALFQEQVSFDHLALVII 121

Query: 401 DEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           DEQHRFGV QRL+L +K       PH L+MTATPIPRTL +T+  D++ S I E P GR 
Sbjct: 122 DEQHRFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRT 181

Query: 457 PIKTVIIPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           PI+TV IP  + DE++ER++   L+EGK+AYW+C  I+E +    ++  E    L     
Sbjct: 182 PIQTVAIPDTKRDEIVERIRHACLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLP 241

Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              I ++HGRM   +K++VM +FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLA
Sbjct: 242 EVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLA 301

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG   S C+LL+H PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+L
Sbjct: 302 QLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELL 361

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           G KQ+G+  F IA       L+   ++ A+HI  + P
Sbjct: 362 GTKQTGLADFKIADLVRDQQLVPQVQRIARHIHERYP 398


>gi|159036815|ref|YP_001536068.1| ATP-dependent DNA helicase RecG [Salinispora arenicola CNS-205]
 gi|157915650|gb|ABV97077.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 733

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 223/713 (31%), Positives = 366/713 (51%), Gaps = 64/713 (8%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS    VG K +  L+  ++   A      DL+++ P  + +R     I  +      T
Sbjct: 11  PLSKL--VGAKTAKALATHLDLHTAG-----DLIYHVPRRYDERGEHTDIRSLDVGEQAT 63

Query: 72  ITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           +   + + +   +++RR    ++ + DG+G    L F+      +     GR     GK+
Sbjct: 64  VLAQVQRTAVRPMRQRRGNLLEVTVGDGSGGALTLTFFGNQVWRERDLRPGRWGLFAGKV 123

Query: 130 KKLKNRIIMVHPHYIFHNSQDVN---------------FPLIEAVYSLPTGLSVDLFKKI 174
            + + R  +  P Y+   + D                  P+  A  ++PT + +    ++
Sbjct: 124 TEFRGRRQLNGPEYVLLGTGDEGEVAASEEVEEFAGALIPVYPAAAAVPTWV-IARCVRV 182

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           +++ +   P  P  +   +   ++   +  A   IH P      E    AR RL +DE  
Sbjct: 183 VLDTVD-PPADP--VPATVRTNRNLIGLGTALREIHRPSSK---EALYRARRRLKWDEAF 236

Query: 235 AGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           A Q+ L+  ++Q       P   V G +       +P+  T  Q     +I  D++  + 
Sbjct: 237 AVQLTLVQRKQQAADRPARPRPAVAGGLRDAFDARLPYQLTVGQRDVGIEIATDLATAHP 296

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQ 349
           M R+LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LA QH+    + +    +  +
Sbjct: 297 MHRLLQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHHRGILDLLGPLGRAGE 356

Query: 350 II-------VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +        VE++TG++  A RR+AL  +  G A I++GTHAL  + + +  L LV+VDE
Sbjct: 357 LDAVEHATRVELVTGSLGAAARRRALGEVRSGAAGIVLGTHALLYEGVDFADLGLVVVDE 416

Query: 403 QHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           QHRFGV+QR  L  KA   PHVL+MTATPIPRT+ +T  GD+++S +++ P GR PI + 
Sbjct: 417 QHRFGVEQRDALRAKAEQPPHVLVMTATPIPRTVAMTVYGDLEVSTLSQLPRGRSPIASH 476

Query: 462 IIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           ++P       +D    RL+  ++ G +AY +CP+I +   S+  +  E           +
Sbjct: 477 VVPAAEKPAFLDRAWRRLREEVTAGHQAYVVCPRIGDGPGSDEEAAQEDDTGRRPPLAVT 536

Query: 518 ---------------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
                          I ++HGR++  +K++VM SF  G   +L+ATTV+EVG+DV +A++
Sbjct: 537 EVAPLLAEGPLHGLRIGVLHGRLAADEKDAVMRSFAAGDLDVLVATTVVEVGVDVPNATV 596

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           +I+ +A+ FG++QLHQLRGRVGRG     C+L+       ++  RL  + +T DGF +AE
Sbjct: 597 MIVLDADRFGVSQLHQLRGRVGRGAAPGLCLLVTEATEGTSARERLDAVGSTTDGFKLAE 656

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLT 674
            DL+QR+EG++LG  QSG    L     L D+ L+  AR +A  ++ QDP+L 
Sbjct: 657 LDLEQRREGDVLGATQSGRRSHLRLLSLLRDADLIRDARAEAIDLVEQDPELA 709


>gi|302380535|ref|ZP_07269000.1| ATP-dependent DNA helicase RecG [Finegoldia magna ACS-171-V-Col3]
 gi|302311478|gb|EFK93494.1| ATP-dependent DNA helicase RecG [Finegoldia magna ACS-171-V-Col3]
          Length = 678

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 228/667 (34%), Positives = 357/667 (53%), Gaps = 28/667 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI-SEERIVT 71
           LS  +G+GKK  L +   +   N N     DLL Y P  + +R     I +   EE  V 
Sbjct: 3   LSEIKGIGKK-KLEVLNSMGINNIN-----DLLNYFPYRYENRSIIKNIIDTRDEENCVI 56

Query: 72  ITGYISQHSSFQLQKRRPYKILLN-DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
              +IS+  +  L++       +  D T +I++ +F      ++N         + GKI+
Sbjct: 57  KVKFISKPITKYLRRNLNLTTAIAFDDTSKISVSWF--NQPFIRNQILPNTTYYLYGKIQ 114

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-----PVL 185
           +++N+  +  P  I   +      +I  +Y +  G++ +   K +  A+         V+
Sbjct: 115 RVQNQFKISSP--ILSKTFGGKLGIIYPIYKVKKGITNNDMIKFVDFAIKHCIDEIKNVI 172

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           P  + K+         I    N I N  K  D+     AR  L  +E++  Q+A+  M+ 
Sbjct: 173 PYSMIKNY-------DIENKRNAIKNIHKPVDYAQFKRARTALVLEEVIIMQLAMKSMKT 225

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
              ++  I    +  I    + ++ F  TK Q  AIKDI  DM+ + RM R++QGDVGSG
Sbjct: 226 SLNQQNYIKFQSDESI-NIFINSLKFELTKGQLEAIKDIEMDMTSEKRMNRLVQGDVGSG 284

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  A+  +  +G Q+  MAP  ILA QHYE + +      I V ++  ++ ++ + 
Sbjct: 285 KTIVAEAAIFKSHSSGYQSAFMAPTDILATQHYESLSEDFSKFGIKVCLLKSDLTKSEKD 344

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
             L+ I  G   +I+GTHA+ QD +++ +L LVI DEQHRFGV QR K++ K   P VL+
Sbjct: 345 LVLKGIKSGYFDVIVGTHAIIQDFVEFKRLGLVITDEQHRFGVGQRKKISDKGQNPDVLV 404

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L+  GD+DIS I E P GRK I+T  +  +    +   ++  +  G +A
Sbjct: 405 MTATPIPRTLALSYYGDLDISTINEMPKGRKTIETYSVGFSYEKRIAAFIRKQVDNGFQA 464

Query: 486 YWICPQIEEKKESNFRSVVERFNSL-HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE +     +V E +N L  E+F+  ++ ++HG+M   +KE  M  F +G   
Sbjct: 465 YIVCPLIEESEALELENVTELYNRLTSEYFSDINVGMLHGKMKSSEKEETMKDFVDGKTN 524

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V  A++I+I NAE FGL+QLHQLRGRVGR  + S CIL+ +   S  
Sbjct: 525 ILVSTTVIEVGVNVRKANVIVIYNAERFGLSQLHQLRGRVGRSSDQSYCILINNAH-SDE 583

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R++++  T  GF ++++DL  R  G++LG +QSG+P   IA  E    L+E A    
Sbjct: 584 QMERMNIMVKTNSGFELSQKDLMMRGSGDLLGTRQSGIPLLNIADLEKDYDLIEKAAVIT 643

Query: 664 KHILTQD 670
            +I T D
Sbjct: 644 DYIYTND 650


>gi|326381570|ref|ZP_08203264.1| ATP-dependent DNA helicase RecG [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199817|gb|EGD56997.1| ATP-dependent DNA helicase RecG [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 756

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 224/683 (32%), Positives = 347/683 (50%), Gaps = 80/683 (11%)

Query: 70  VTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           +T+ G I +     +++R  +  K+++NDG  +    FF  +   ++ V   G ++ + G
Sbjct: 58  ITVIGRIQKAQMISMKRRYGQFLKVVVNDGRADYEASFFNAR--WIQKVLKPGTRVAMAG 115

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDV-----NFPLIEAVY-------------SLPTGLSVD 169
            +K  +++I + HP ++     D      N  +I  +Y             S  +     
Sbjct: 116 TVKLFRDQIQLSHPDWMVMPEDDGIDVVGNAAMIGEMYADAAESGDEKTHGSTASADDAR 175

Query: 170 LFKKIIVEALSRLPVLPEW-------------------IEKDLLQKKSFPSIAEAFNIIH 210
            F + I+        +  W                   +  D    +   +  EA + +H
Sbjct: 176 SFARDIIPMYPATKDVQTWEIWRAVRQVLADTVPAEDPLTDDQRTSRGLITGDEAIHRVH 235

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNI 269
            P   +D E    AR RL +DE LA Q  L   R     E   P  +V G +  ++L  +
Sbjct: 236 LPENLEDIE---AARARLKFDEALAVQTELARRRLSAVAESARPCPHVPGGLEDQLLDRL 292

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q   + +I +D++ ++ M R+LQG+VGSGKTLV+L+AM   V+ G Q  I+AP
Sbjct: 293 PFELTGGQRDVLLEIGEDLADEHPMSRLLQGEVGSGKTLVSLLAMLRVVDNGHQCAILAP 352

Query: 330 IGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             +LA QHY  +                +    V ++TG++  A +R+ L     G A I
Sbjct: 353 TEVLAAQHYRTVMTMLGDLARAGELGAADGATRVGLLTGSLGTATKRQVLLDAVTGDAGI 412

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTL 435
           +IGTHAL ++ ++++ L +V+VDEQHRFGV+QR  L  K    + PH L+MTATPIPRT+
Sbjct: 413 VIGTHALLEEHVEFFDLGMVVVDEQHRFGVEQRDVLRSKGRDDSRPHFLVMTATPIPRTV 472

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQI 492
            + + GD+D S +TE P GR+PI T ++P+ +   +D V  R    +  G++ Y +C +I
Sbjct: 473 AMITFGDLDTSVMTELPRGRQPITTSVVPMRKQAWVDRVWARANEEIDAGRQVYVVCTKI 532

Query: 493 EEKKESNFRSVVERFNSLHEHFTSS-----------------IAIIHGRMSDIDKESVMD 535
            +++ +  RS      S  E  T S                 I I+HGR+   +K  VMD
Sbjct: 533 GDEQTNAKRSKKSAKESEAEDDTISVLDLAEQLAAGPLAGRRIGILHGRLPADEKNDVMD 592

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +F  G   +L+ATTVIEVG+DV +A+++ I NAE FG++QLHQLRGRVGRGE    C+L+
Sbjct: 593 AFTRGEIDVLVATTVIEVGVDVPNATMMAIVNAERFGVSQLHQLRGRVGRGEHAGLCLLM 652

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS- 654
                   S  RL  ++ + DGF +A  DL QR+EG+ILG  QSG    L     L D+ 
Sbjct: 653 TTAGDMGQSMERLRAVEASSDGFELARVDLAQRREGDILGALQSGGKSSLSFLSLLDDTD 712

Query: 655 LLEIARKDAKHILTQDPDLTSVR 677
           ++  AR  A+ I+  DPDL + R
Sbjct: 713 VIADARDLAEQIVLDDPDLVAHR 735


>gi|290957125|ref|YP_003488307.1| ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
 gi|260646651|emb|CBG69748.1| putative ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
          Length = 751

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 231/725 (31%), Positives = 373/725 (51%), Gaps = 79/725 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ---HSSFQLQKRRP----YKILLN 95
           DLL ++P  + +R    +++++  +  VT+   ++    H+    +  R      ++ + 
Sbjct: 39  DLLHHYPRRYEERGRLTRLADLPMDEHVTVVAQVADARLHTFASAKAPRGKGQRLEVTIT 98

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF----HNSQDV 151
           DG+G + L+FF             G +    GK+     R+ + HP Y       +S+D 
Sbjct: 99  DGSGRLQLVFFGHGVHKPHKDLLPGTRALFAGKVSVFNRRLQLAHPAYELLRGEGDSEDT 158

Query: 152 N---------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSI 202
                      P+  A   L +       + ++  A   +  LP+     L + +   S+
Sbjct: 159 ETVGTWAGALIPIYPATAKLESWKIAKAVQTVLPSAQEAVDPLPD----SLREGRGLVSL 214

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
            +A   IH P    D +    AR+RL +DE    Q+AL   R    +   +P       +
Sbjct: 215 PDALVKIHRPHTKADRD---SARDRLKWDEAFVLQVALARRRHADSQ---LPAVARRPAS 268

Query: 263 QKILR----NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             +L      +PF+ T  Q    ++I  D++ ++ M R+LQG+VGSGKTLVAL AM A V
Sbjct: 269 DGLLTAFDARLPFTLTDGQRKVSREIFDDLATEHPMHRLLQGEVGSGKTLVALRAMLAVV 328

Query: 319 EAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQI-------IVEIITGNMPQAHRRKA 367
           +AGGQA ++AP  +LAQQH+    E + +  +   +        V ++TG+M  A RR+A
Sbjct: 329 DAGGQAAMLAPTEVLAQQHHRSVTEMMGELAEGGMLGGSEHATKVVLLTGSMGAAGRRQA 388

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLM 426
           L  +  G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR  L  K    PH+L+M
Sbjct: 389 LLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVM 448

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEG 482
           TATPIPRT+ +T  GD+D S + + PAGR PI + ++P       +    ER++  +  G
Sbjct: 449 TATPIPRTVAMTVFGDLDTSVLDQLPAGRSPIASHVVPAADKPHFLARAWERVREEVENG 508

Query: 483 KKAYWICPQIEEK------------KESNFRS------------VVERFNSLHEHFTSS- 517
            +AY +CP+I +             K+S  +S            V++  + L +      
Sbjct: 509 HQAYVVCPRIGDDVDEPADPNRTGAKKSGGKSPEDEAEKRPPLAVLDVADQLAKGPLQGL 568

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            + ++HGRM   DK++VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++QL
Sbjct: 569 RVEVLHGRMHPDDKDAVMRRFAAGETHVLVATTVIEVGVNVPNATAMVIMDADRFGVSQL 628

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG     C+L+   P +  +  RL  +  T DGF ++  DL+QR+EG++LG 
Sbjct: 629 HQLRGRVGRGSAAGLCLLVTEMPEASPARQRLGAVAATLDGFELSRIDLEQRREGDVLGQ 688

Query: 637 KQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
            QSG    L     + D  ++  AR++A  ++  DPDL  +   ++R  L      E  Q
Sbjct: 689 AQSGARTSLRMLTVIDDEEIIAEARQEAAAVVAADPDLDHL--PALRTALDALLDEEREQ 746

Query: 696 FIRAG 700
           ++  G
Sbjct: 747 YLDKG 751


>gi|154482960|ref|ZP_02025408.1| hypothetical protein EUBVEN_00658 [Eubacterium ventriosum ATCC
           27560]
 gi|149736244|gb|EDM52130.1| hypothetical protein EUBVEN_00658 [Eubacterium ventriosum ATCC
           27560]
          Length = 674

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 220/673 (32%), Positives = 364/673 (54%), Gaps = 27/673 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK-ISEISEERIVT 71
           L+  +G+G+K      K      A   +  DLL Y+P  + D    P  I ++  +R   
Sbjct: 3   LNNLKGIGEKTEKLFYK------AGVEKVNDLLRYYPR-YYDVFEEPVLIRDLECDRTQA 55

Query: 72  ITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I G + +  S  +++ R  +++   L D  G+     ++  +  LK     G      G 
Sbjct: 56  IKGTVVREVS--VKRVRNLQVVTGYLRDERGDAIKATWF-NSPYLKGKLTIGSTFIFRGF 112

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           +K+  +   +  P        +     ++ VY L +GL+ ++ +K + +AL +L    E+
Sbjct: 113 VKENYSNFSIEQPKIFGIAEYNKKKGEMQPVYPLVSGLTNNMVQKAVKQAL-KLVETEEF 171

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           + + +  K     + +A   IH P    D      AR+RL +DE       +  ++ +  
Sbjct: 172 LPEKIRNKYGLEGLQQAIEHIHYP---TDKNQLYSARKRLIFDEFFMFIYNIRNLKDKNT 228

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +     I VE K  + ++ N+P+  T +Q+   ++I +D+S    M R++QGDVGSGKT+
Sbjct: 229 EIHNRHILVEPKEVKTLINNLPYELTNAQKRTWEEIKRDISSTKVMNRLIQGDVGSGKTI 288

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHR 364
           +A  A+  A    GQ  +MAP  +LA+QHY    E IK++  N   +V  + G+M    +
Sbjct: 289 IAFFALITAALNNGQGAMMAPTEVLARQHYDNLIELIKEHNINVNPVV--LVGSMTAKEK 346

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R+A + I  G A IIIGTHAL Q+ + Y  L +V+ DEQHRFGV+QR  +++K   PH++
Sbjct: 347 REAYKVIESGDADIIIGTHALIQEKVNYNNLTMVVTDEQHRFGVRQREAISEKGEHPHIM 406

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPRTL +   GD+DIS I E PA R PI   ++  +      + +   +++G++
Sbjct: 407 VMSATPIPRTLAIIMYGDLDISVIDELPANRLPIANCVVGTDYRPNAYDFMTKQIAKGRQ 466

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTC 542
            Y ICP +E  +     +V+E    L      S+ I  +HGRM   +K  +MD F N   
Sbjct: 467 VYVICPTVEYSEAVEGENVIEYAEKLKRIMPVSVNIEFLHGRMKPAEKNEIMDRFANNQI 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L++TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRG+  S CI + +    K
Sbjct: 527 QILVSTTVVEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGKYQSYCIFI-NGSGKK 585

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL++L  + DGFLIA EDLK R  G+  G++QSG  +F +       ++L+ A + 
Sbjct: 586 EALERLNILCKSNDGFLIANEDLKLRGPGDFFGVRQSGDFEFRLGDIMNDANILKQASEA 645

Query: 663 AKHILTQDPDLTS 675
            + IL ++ +++ 
Sbjct: 646 VELILNEEVEISD 658


>gi|229552461|ref|ZP_04441186.1| DNA helicase RecG [Lactobacillus rhamnosus LMS2-1]
 gi|258539832|ref|YP_003174331.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus Lc 705]
 gi|229314198|gb|EEN80171.1| DNA helicase RecG [Lactobacillus rhamnosus LMS2-1]
 gi|257151508|emb|CAR90480.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus Lc 705]
          Length = 679

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 209/650 (32%), Positives = 358/650 (55%), Gaps = 19/650 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN---DGTG 99
           D+LFY P  + D   +  ++E +++  +TI G +       + +  P++  +N       
Sbjct: 31  DVLFYFPFRYDDLKVK-DLAEAADQEKLTIKGVVVADPV--ISRFGPHRSRVNVKLQVER 87

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
            + L+ FY +   LK+ F  G +  V GK    +  +  +    +   SQD   P + A+
Sbjct: 88  SVILVTFYNQP-WLKDRFQMGDEAAVFGKWDAQRRSLTGMK--ILATQSQDQ--PSMAAI 142

Query: 160 YSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           Y++   + +    ++I  A +R    + + I   +       S  +  + +H P   ++ 
Sbjct: 143 YTVNKNVRMGTLLELIKAAWARDHQNIHDLIPASIRAHYRLMSDEQLVHGMHFPDTQQE- 201

Query: 219 EWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
                AR    + E    Q+ +  +++       G+ I  + +  + ++  +PFS T +Q
Sbjct: 202 --AKAARRSGVFREFFLFQLQIQALKQLNDNANNGLAIPYDNQALRALIATLPFSLTNAQ 259

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +  + +I  DM + N M R+LQGDVGSGKT+VA I + AAV AG QA +M P  +LA+QH
Sbjct: 260 KRVVNEICADMRRPNHMNRLLQGDVGSGKTIVAAIVLYAAVTAGYQAALMVPTEVLAEQH 319

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           +  ++    +  + + ++TG+     RR+ L  +  G  ++IIGTHAL Q  + +  L L
Sbjct: 320 FAKLEALFADFPVKLGLLTGSTTAKKRREMLAELRDGTLNLIIGTHALIQKGVDFKALGL 379

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           V++DEQHRFGV QR  L +K   P +L MTATPIPRTL +T+ G++D+S I E PAGRKP
Sbjct: 380 VVIDEQHRFGVNQRKILQEKGQKPDLLSMTATPIPRTLAITAYGEMDVSTIDELPAGRKP 439

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--T 515
           I T  +  N++ +V   ++  +  G + + I P I E ++ + ++  + F  + +     
Sbjct: 440 ITTTWLRKNQVGQVYRLIRSQVQAGSQVFAITPLIAESEKVDLQNAEQLFADMQKAVGDV 499

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +A++HG+M   +K+ +M +F +G   +L++TTV+EVG+DV +A+++ I +A+ FGL+Q
Sbjct: 500 GQVALLHGKMKPDEKDQIMRAFSHGDIAVLVSTTVVEVGVDVPNATVMAIFDADRFGLSQ 559

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG + + C+L+  P  ++    R+ ++  T DGFL+A++DL+ R  G+I G
Sbjct: 560 LHQLRGRVGRGNKAAQCLLIADPK-NEQGIARMQIMTKTNDGFLLAQKDLEMRGSGDIFG 618

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            KQSG+P+F +A P      LE+A++    I   DP L +   Q +   L
Sbjct: 619 DKQSGLPEFKVADPVGDFPTLEVAQQIVAKIFKTDPHLLAPEHQPLAAYL 668


>gi|154496256|ref|ZP_02034952.1| hypothetical protein BACCAP_00541 [Bacteroides capillosus ATCC
           29799]
 gi|150274339|gb|EDN01416.1| hypothetical protein BACCAP_00541 [Bacteroides capillosus ATCC
           29799]
          Length = 694

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 227/650 (34%), Positives = 357/650 (54%), Gaps = 31/650 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGE 100
           +LL Y+P S+ DR     I    EE+ V +  ++++       ++     K+ + D T  
Sbjct: 33  NLLGYYPRSYEDRTKISTIDGAPEEQPVCVAAFVAETPRVSHIRKGLELVKVKVADETAV 92

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIEAV 159
           +T+ FF +    +++    G      GK+++   +  M +P  +F       F   I  V
Sbjct: 93  MTVTFFNQA--YVRDALRLGESYIFYGKVERQGRQRQMTNP--VFEREGAARFTGCIMPV 148

Query: 160 YSLPTGLSVDLFKKI---IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
           Y L  G+S +L   +    V+  +R   +PE + +++    S   +  +   IH P   +
Sbjct: 149 YPLTAGISNNLLAGLARRCVDECARQ--VPELLPEEVRLAHSLAQVEFSCRNIHFP---E 203

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +E    AR RL ++E       + L+R    ++ G    VE +     L  +PFS T +
Sbjct: 204 SWEALEIARRRLIFEEFFLLSCGMSLLRT--GRDRGAGPAVENRDLTPFLSLLPFSFTGA 261

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   + +   DM+    M R++QGDVGSGKT VA      A + G Q+ +MAP  ILA+Q
Sbjct: 262 QRRTVDEAAADMASGRPMNRLVQGDVGSGKTAVAAACAWLAWQGGWQSAMMAPTEILAEQ 321

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+  +        + V ++TG+M  A +RKA   +A G+  +++GTHAL  + +++ KL 
Sbjct: 322 HFRSLSSLLSPAGMRVGLLTGSMKAAEKRKAKAALAAGEVDLMVGTHALLSEGVEFRKLG 381

Query: 397 LVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           LVI DEQHRFGV QR  L  KA     PHVL+M+ATPIPRTL L   GD+D+S I E P 
Sbjct: 382 LVITDEQHRFGVAQRAALAAKADGGLRPHVLVMSATPIPRTLALIVYGDLDVSVIDELPP 441

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--------SNFRSVVE 505
           GR P++T ++  ++   +   ++ +++EG++AY +CP +EE  +        ++ ++V  
Sbjct: 442 GRTPVETFVVGEDKRQRMYGFVRKLVAEGRQAYIVCPAVEENPDGEDAFGGLADLKAVTT 501

Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
              +L         +A +HG+M   DK++VM +F  G   +L++TTVIEVG+DV +A+++
Sbjct: 502 YAETLKTQVFPDLRVAFVHGKMKPKDKDAVMSAFSAGDIDVLVSTTVIEVGVDVPNAALM 561

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           I+ENAE FGL+QLHQLRGRVGRG+  S C+L+     S++S  RL VL +T DGF IAEE
Sbjct: 562 IVENAERFGLSQLHQLRGRVGRGKHKSYCVLMTATH-SQDSRARLKVLASTTDGFKIAEE 620

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           DLK R  G+  G +Q G+P+  IA       LL+ A++ A+ +L  DP L
Sbjct: 621 DLKLRGPGDFFGSRQHGLPQLHIADLAGDVRLLKEAQQAARDLLEADPGL 670


>gi|199597141|ref|ZP_03210573.1| RecG-like helicase [Lactobacillus rhamnosus HN001]
 gi|258508655|ref|YP_003171406.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus GG]
 gi|199591945|gb|EDZ00020.1| RecG-like helicase [Lactobacillus rhamnosus HN001]
 gi|257148582|emb|CAR87555.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus GG]
 gi|259649961|dbj|BAI42123.1| DNA helicase RecG [Lactobacillus rhamnosus GG]
          Length = 679

 Score =  344 bits (882), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 212/662 (32%), Positives = 358/662 (54%), Gaps = 43/662 (6%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN---DGTG 99
           D+LFY P  + D   +  ++E +++  +TI G +       + +  P++  +N       
Sbjct: 31  DVLFYFPFRYDDLKVK-DLAEAADQEKLTIKGVVVADPV--ISRFGPHRSRVNVKLQVER 87

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
            + L+ FY +   LK+ F  G +  V GK    +  +  +        +Q  N P + A+
Sbjct: 88  SVILVTFYNQP-WLKDRFQMGDEAAVFGKWDAQRRSLTGMK----ILATQSQNQPSMAAI 142

Query: 160 YSLPTGLSVDLFKKIIVEALSR-----LPVLPEWI--------EKDLLQKKSFPSIAEAF 206
           Y++   + +    ++I  A +R       ++P  I        ++ L+    FP      
Sbjct: 143 YTVNKNVRMGTLLELIKAAWARDHQNIHDLIPASIRAHYRLMSDEQLVHGMHFPD----- 197

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKI 265
                P++AK       AR    + E    Q+ +  +++       G+ I  +    + +
Sbjct: 198 ----TPQEAK------AARRSGVFREFFLFQLQIQALKQLNDNANNGLAIPYDNHALRAL 247

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           +  +PFS T +Q+  + +I  DM + N M R+LQGDVGSGKT+VA I + AAV AG QA 
Sbjct: 248 IATLPFSLTNAQKRVVNEICADMRRPNHMNRLLQGDVGSGKTIVAAIVLYAAVTAGYQAA 307

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +M P  +LA+QH+  ++    +  + + ++TG+     RR+ L  +  G  ++IIGTHAL
Sbjct: 308 LMVPTEVLAEQHFAKLEALFADFPVKLGLLTGSTTAKKRREMLAELRDGTLNLIIGTHAL 367

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            Q  + +  L LV++DEQHRFGV QR  L +K   P +L MTATPIPRTL +T+ G++D+
Sbjct: 368 IQKGVDFKALGLVVIDEQHRFGVNQRKILQEKGQKPDLLSMTATPIPRTLAITAYGEMDV 427

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I E PAGRKPI T  +  N++ +V   ++  +  G + + I P I E ++ + ++  +
Sbjct: 428 STIDELPAGRKPITTTWLRKNQVGQVYRLIRSQVQAGSQVFAITPLIAESEKVDLQNAEQ 487

Query: 506 RFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            F  + +       +A++HG+M   +K+ +M +F +G   +L++TTV+EVG+DV +A+++
Sbjct: 488 LFADMQKAVGDVGQVALLHGKMKPDEKDQIMRAFSHGDIAVLVSTTVVEVGVDVPNATVM 547

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
            I +A+ FGL+QLHQLRGRVGRG + + C+L+  P  ++    R+ ++  T DGFL+A++
Sbjct: 548 AIFDADRFGLSQLHQLRGRVGRGSKAAQCLLIADPK-NEQGIARMQIMTKTNDGFLLAQK 606

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           DL+ R  G+I G KQSG+P+F +A P      LE A++    I   DP L +   Q +  
Sbjct: 607 DLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEAAQQIVAKIFKTDPHLLAPEHQPLAA 666

Query: 684 LL 685
            L
Sbjct: 667 YL 668


>gi|237742689|ref|ZP_04573170.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 4_1_13]
 gi|294784786|ref|ZP_06750074.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_27]
 gi|229430337|gb|EEO40549.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 4_1_13]
 gi|294486500|gb|EFG33862.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_27]
          Length = 689

 Score =  344 bits (882), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 226/608 (37%), Positives = 349/608 (57%), Gaps = 20/608 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEI 101
           DL++Y P ++ DR     I E+     V +   +    +  ++  ++  K ++ DGTG +
Sbjct: 38  DLIYYFPRAYDDRTNIKSIGELKFNEYVVLKATVMSVVNLTVRSGKKIVKAMVTDGTGIM 97

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160
            +L+F      +K     G +    G+ KK      +++P Y +F   Q V+   I  +Y
Sbjct: 98  EILWF--GMPYIKKSLKIGEEYLFIGQTKK-SAVFQLINPEYKLFSGQQKVSENEILPIY 154

Query: 161 SLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           S    ++ +  +K++ + L   L    E I   L+++        A   IH P   K+ E
Sbjct: 155 SSNKNITQNSLRKLVEKFLVNFLNYFEENIPNKLIKEYRIMERKRAIKNIHYPISMKEIE 214

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQ 277
               A+ R A +ELL  ++ +L  R   +        VEGK    ++ L  + F+ T +Q
Sbjct: 215 ---EAKRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKVREFLSQLTFNLTNAQ 271

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +  IK+I  ++S    + R++QGDVGSGKT+VA++ +    E G Q  +MAP  ILA QH
Sbjct: 272 KKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGYQGALMAPTEILANQH 331

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y  IK+  +   + VE++T ++    + + LE IA+G+  I+IGTH+L +D++ + KL L
Sbjct: 332 YLGIKERLEKIGLRVELLTSSIKGKKKNEILEGIANGEIDIVIGTHSLIEDNVIFKKLGL 391

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +++DEQHRFGV QR KL +K    ++L+M+ATPIPR+L L+  GD+D+S I E P GR P
Sbjct: 392 IVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGDLDLSIIDELPPGRTP 451

Query: 458 IKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           I+T  I     DE +E++   +    +EG +AY++ P IE   +   +SV +    +   
Sbjct: 452 IRTKWIA---NDEDLEKMYNFIYKKVNEGNQAYFVAPLIETSDKMALKSVDKVSEEIERK 508

Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           F++  I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  ++I+ I NAE FG
Sbjct: 509 FSNKKIGIIHGKMKAKEKDDVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFG 568

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+ LHQLRGRVGRG + S C L+ +  +++NS  RLS+++ TEDGF IAEEDLK R  GE
Sbjct: 569 LSALHQLRGRVGRGSKQSYCFLISN-SITENSKQRLSIMEETEDGFRIAEEDLKLRNSGE 627

Query: 633 ILGIKQSG 640
           I G++QSG
Sbjct: 628 IFGLRQSG 635


>gi|326693689|ref|ZP_08230694.1| ATP-dependent DNA helicase RecG [Leuconostoc argentinum KCTC 3773]
          Length = 676

 Score =  343 bits (881), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 218/637 (34%), Positives = 355/637 (55%), Gaps = 27/637 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRRPYKILLNDGTG 99
           DLL Y P  + D   R + SE  +   VT  G +S     + F  + +  + +L+     
Sbjct: 32  DLLGYFPFRYEDLGER-RPSETLDGEKVTFKGVVSAPPVVTRFGKKNQTHFGLLIEHENV 90

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
            +T   F+ +  + +N+   G+++ V G     K  +  +       N+       ++ +
Sbjct: 91  RVT---FFNQPWLAQNIAV-GQEVAVYGTYNAAKASLTGMKMINATANA-------LDPI 139

Query: 160 YSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           Y     ++    + ++  A + +   +P+ +   L QK            +H P    D 
Sbjct: 140 YPASKQITAKTIRNLVELAWADVRGTMPDLVPLSLRQKYRLLDRNTQIEHMHFP---TDM 196

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
                AR   A++E    Q+ L L++   +K  G  I  + +  +K    +PF+ T +Q+
Sbjct: 197 PAAKAARRSAAFEEFFIFQMRLQLLKLADQKFAGEGIAYDAQALKKFEAGLPFTLTTAQK 256

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             I +ILQD  +   M R+LQGDVGSGKT+VA +AM A V AG QA IMAP  ILAQQH 
Sbjct: 257 KVIAEILQDQHRPRHMNRLLQGDVGSGKTVVAAMAMYAVVTAGLQAAIMAPTEILAQQHA 316

Query: 339 EFIKKY--TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
             + +       Q+ +E++T  +  A RR+ LE + +G+  I++GTHAL Q  + ++ L 
Sbjct: 317 LNLAQLFDRAGVQLRIELLTSGLRAAARRQILEDLENGEIDILVGTHALLQPDVAFHHLG 376

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L ++DEQHRFGV QR  L +    P +L MTATPIPRTL +T+ G++D+S I + P+GRK
Sbjct: 377 LAVIDEQHRFGVNQRAALRENGVNPDILAMTATPIPRTLSITAYGEMDVSIIDQLPSGRK 436

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I T  +  N++D  +  +K  L +G +AY + P IEE +  + ++    + ++      
Sbjct: 437 AIATKRLSHNQLDAALAFVKQQLDDGAQAYIVTPLIEESESLDVQNATAMYEAMQLELPE 496

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            +I ++HGR+S+ +K+ +M  FK    ++L+ATTVIEVG+DV +ASI++I +A+ FGLAQ
Sbjct: 497 YTIGLLHGRLSNDEKKQLMADFKANRIQVLVATTVIEVGVDVPNASIMLILDADRFGLAQ 556

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           LHQLRGRVGRG   S  +L+  P   K  Y   RL  +  T +GF++A++DL+ R  G+I
Sbjct: 557 LHQLRGRVGRGSRQSYTLLIADP---KTDYGTARLDAMVATTNGFVLAQKDLELRGSGDI 613

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           LG KQSG+P+F++  P    +++EIA+++A  +++Q+
Sbjct: 614 LGTKQSGVPEFVVGDPIKDLTMMEIAQQEAIALVSQE 650


>gi|296111735|ref|YP_003622117.1| ATP-dependent DNA helicase RecG [Leuconostoc kimchii IMSNU 11154]
 gi|295833267|gb|ADG41148.1| ATP-dependent DNA helicase RecG [Leuconostoc kimchii IMSNU 11154]
          Length = 676

 Score =  343 bits (881), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 183/445 (41%), Positives = 282/445 (63%), Gaps = 8/445 (1%)

Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
           ++E    Q+ L L++   +   G  IN +    +K    +PF  T +Q+  I +ILQD  
Sbjct: 208 FEEFFVFQMRLQLLKLADQNFAGEGINYDTLALEKFEAELPFDLTPAQQKVISEILQDQK 267

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           +   M R+LQGDVGSGKT+VA +AM A V AG QA IMAP  ILAQQH   + +  +N  
Sbjct: 268 RPRHMNRLLQGDVGSGKTVVAAMAMYAVVTAGMQAAIMAPTEILAQQHALNLAQLFENAG 327

Query: 350 II--VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
           +   VE++T  +  A RR+ LE +  G+  I++GTHAL Q  + ++ L L ++DEQHRFG
Sbjct: 328 VSLRVELLTSGLKVAARRQLLEDLESGEIDILVGTHALLQPDVAFHHLGLAVIDEQHRFG 387

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           V+QR  L +    P +L MTATPIPRTL +T+ G++D+S I + P GRK I+T  +  N+
Sbjct: 388 VKQRAALRENGVNPDILAMTATPIPRTLSITAYGEMDVSVIDQLPIGRKAIQTTRMSHNQ 447

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +D  I  +K  +  G +AY + P IEE +  + ++    + ++   F   ++ ++HGR+S
Sbjct: 448 LDHAIAFVKKQIDAGAQAYVVTPLIEESESLDVQNATAMYEAMQLEFPQYTVGLLHGRLS 507

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           + +K+++M  FK    ++L+ATTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGRG
Sbjct: 508 NDEKKALMADFKANHIQILVATTVIEVGVDVPNATVMLILDADRFGLAQLHQLRGRVGRG 567

Query: 587 EEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
              S  IL+  P   K  Y   RL  +  T +GF++A+ DL+ R  G+ILG KQSG+P+F
Sbjct: 568 HRQSYTILVADP---KTDYGTARLDAMVETTNGFILAQRDLELRGSGDILGTKQSGVPEF 624

Query: 645 LIAQPELHDSLLEIARKDAKHILTQ 669
           ++  P    +++EIA+++A  +++Q
Sbjct: 625 VVGDPIKDLTMMEIAQQEAITLVSQ 649


>gi|239631975|ref|ZP_04675006.1| ATP-dependent DNA helicase RecG [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526440|gb|EEQ65441.1| ATP-dependent DNA helicase RecG [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 453

 Score =  343 bits (881), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 171/424 (40%), Positives = 273/424 (64%), Gaps = 3/424 (0%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G+ I  + +  + ++  +PF+ T +Q+  + +I  DM + N M R+LQGDVGSGKT+VA 
Sbjct: 8   GLAIPYDNQALRALIATLPFALTNAQKRVVNEICADMRRPNHMNRLLQGDVGSGKTIVAA 67

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           I + AAV AG QA +M P  +LA+QH+  + K  ++  + + ++TG+     RR+ L  +
Sbjct: 68  IVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTSTKKRRELLSEL 127

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G+ ++IIGTHAL Q  + ++ L LV++DEQHRFGV QR  L +K   P +L MTATPI
Sbjct: 128 RDGRLNLIIGTHALIQKGVDFHALGLVVIDEQHRFGVNQRKILQEKGQKPDLLSMTATPI 187

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL +T+ G++D+S I E PAGRKPI T  +  N+ID+V   ++  +  G + + I P 
Sbjct: 188 PRTLAITAYGEMDVSTIDELPAGRKPIATTWLRKNQIDQVYRIIREQVQSGSQVFAITPL 247

Query: 492 IEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           I E ++ + ++  + F  + +   +   +A++HG+M   +K+ +M +F +G   +L++TT
Sbjct: 248 IAESEKIDLQNAEQLFVDMQKAVGNLGPVALLHGQMKPDEKDQIMRAFSDGKIAVLVSTT 307

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V+EVG+DV +A+++ I +A+ FGL+QLHQLRGRVGRG++ + C+L+  P  ++    R+ 
Sbjct: 308 VVEVGVDVPNATVMAIFDADRFGLSQLHQLRGRVGRGQKAAQCLLIADPK-NEQGIARME 366

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           ++  T DGFL+A++DL+ R  G+I G KQSG+P+F +A P      LE A+K    I   
Sbjct: 367 IMTKTNDGFLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEAAQKIVAQIFKT 426

Query: 670 DPDL 673
           DP L
Sbjct: 427 DPHL 430


>gi|224542838|ref|ZP_03683377.1| hypothetical protein CATMIT_02030 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524250|gb|EEF93355.1| hypothetical protein CATMIT_02030 [Catenibacterium mitsuokai DSM
           15897]
          Length = 676

 Score =  343 bits (881), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 194/516 (37%), Positives = 299/516 (57%), Gaps = 18/516 (3%)

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALS-RLPV---LPEWIEK--DLLQKKSFPSIAEAFNII 209
           I  VYSL  GL+   F + + + L   +P+   LP  I +  DL+ KK      EA   +
Sbjct: 139 ITPVYSLKDGLTSHAFSQYVKKVLGMNIPIEDGLPIEIRETVDLMSKK------EALYAV 192

Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
           H P    + E      + L Y+E L  ++AL   R Q ++E+G   +         +  +
Sbjct: 193 HFPM---NHEQLQKGIKTLKYEEFLNFELALSYRRMQREQEVGYAKDFSLDEVNAFIHTL 249

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  TK Q+ + K+IL D+     M R LQGDVGSGKT+VA I + A   +G Q  +MAP
Sbjct: 250 PFKLTKDQKQSAKEILLDLHNPTIMYRFLQGDVGSGKTIVAAIGLYANYLSGYQGALMAP 309

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA QHY  +KK  +   + + ++TG++    +++  E +  G   ++IGTHALFQ+S
Sbjct: 310 TEVLATQHYSKLKKTFEAYNMNIALLTGSLTLKEKKEIYEGLKSGVIDLVIGTHALFQES 369

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y  L  V+ DEQHRFGV+QR  L QK      L+M+ATPIPRTL ++  GD+D+S I 
Sbjct: 370 VHYKNLGFVVTDEQHRFGVKQRKALKQKGEGVDFLVMSATPIPRTLAMSLYGDMDVSSIE 429

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            +P GRKPI T     + +   +++LK  LS+  + Y ICP IE+ ++   +S +  + +
Sbjct: 430 TRPEGRKPILTKYFEGSSMKPFLKQLKSYLSQDGQCYVICPLIEDNEDLPLKSALTIYEA 489

Query: 510 LHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +  +F       ++HG + D +K +VM  FK+   ++L++TTV+EVG+DV +A++++I N
Sbjct: 490 MSSYFKGHYQTGLLHGSLKDEEKNAVMQDFKDNKIQILVSTTVVEVGVDVPNANMMVIYN 549

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           AE FGL+ +HQLRGR+GRG++   C LL      + +  RL  L+  +DGF I++ DLK 
Sbjct: 550 AERFGLSSIHQLRGRIGRGDQQGYCFLLSEAQ-DEPAKERLHYLEEHDDGFEISQYDLKT 608

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           R  GE+LG KQSG+P F++       ++LE  R+ A
Sbjct: 609 RGPGELLGDKQSGLPAFMMGDIFKDMNILEETRRYA 644


>gi|302554401|ref|ZP_07306743.1| ATP-dependent DNA helicase RecG [Streptomyces viridochromogenes DSM
           40736]
 gi|302472019|gb|EFL35112.1| ATP-dependent DNA helicase RecG [Streptomyces viridochromogenes DSM
           40736]
          Length = 742

 Score =  343 bits (881), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 228/696 (32%), Positives = 366/696 (52%), Gaps = 75/696 (10%)

Query: 3   PSFLNPLFAPLSTFRG--VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           P+   PL  PL +  G    K  +  L  ++  G        DLL ++P  + +R     
Sbjct: 5   PALEEPLQQPLKSVLGPATAKVMAEHLG-LLTVG--------DLLHHYPRRYEERGQLTH 55

Query: 61  ISEISEERIVTITGYISQ---HSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEML 113
           ++++  +  VT+   ++    H+    +  R      ++ + DG+G + L+FF       
Sbjct: 56  LADLPMDEHVTVVAQVADARLHTFASAKAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKP 115

Query: 114 KNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSL-----PTGLS 167
                 G +    GK+     R+ + HP Y +   + D     +EA         P    
Sbjct: 116 HKELLPGTRAMFAGKVSVFNRRLQLAHPAYELLRGNPDEPDEAVEAWAGTLIPIYPATAK 175

Query: 168 VDLFKKIIVEAL-SRLPVLPEWIE---KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP 223
           ++ +K  I +AL + LP   E ++     L Q +    + EA   IH P    D E    
Sbjct: 176 LESWK--IGKALQTVLPTAQEAVDPLPDSLRQGRGLVPLPEALLKIHRPHTKADIE---D 230

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIAQKILRNIPFSPTKSQESAI 281
           AR RL +DE    Q+AL   R    +   +P     +G ++    R +PF+ T  Q+   
Sbjct: 231 ARARLKWDEAFVLQVALARRRHAETQLPAVPRRPTPDGLLSAFDAR-LPFTLTDGQQRVS 289

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           ++I  D++  + M R+LQG+VGSGKT+VAL AM A V+AGGQA ++AP  +LAQQH+  I
Sbjct: 290 REIFDDLATDHPMHRLLQGEVGSGKTMVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSI 349

Query: 342 KKYT-------------QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            +               Q T+++  ++TG+M  A RR AL  +  G+A I+IGTHAL +D
Sbjct: 350 VEMMGELAEGGMLGGAEQATKVV--LLTGSMGAAARRHALLDLTTGEAGIVIGTHALIED 407

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISK 447
            +Q++ L LV+VDEQHRFGV+QR  L  K    PH+L+MTATPIPRT+ +T  GD++ S 
Sbjct: 408 KVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSV 467

Query: 448 ITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS- 502
           + + PAGR PI + ++P       +    ER++  +  G +AY +CP+I ++++   ++ 
Sbjct: 468 LDQLPAGRSPIASHVVPAADKPHFLARAWERVREEVGNGHQAYVVCPRIGDEEDDPKKAG 527

Query: 503 ----------------VVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
                           V++  + L +   S  ++ ++HGRM   DK++VM  F  G   +
Sbjct: 528 KKKSPEDEAEKRPPLAVLDVADQLSKGPLSGLTVEVLHGRMHPDDKDAVMRRFAAGETGV 587

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG     C+L+     +  +
Sbjct: 588 LVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMAEASAA 647

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
             RL  + +T DGF ++  DL+QR+EG++LG  QSG
Sbjct: 648 RQRLGAVASTLDGFELSRIDLEQRREGDVLGQAQSG 683


>gi|221194768|ref|ZP_03567825.1| ATP-dependent DNA helicase RecG [Atopobium rimae ATCC 49626]
 gi|221185672|gb|EEE18062.1| ATP-dependent DNA helicase RecG [Atopobium rimae ATCC 49626]
          Length = 720

 Score =  343 bits (881), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 232/660 (35%), Positives = 353/660 (53%), Gaps = 34/660 (5%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN--- 95
           +R  DLL + P  ++D      I+  +    VTI   + +     ++  RP   ++    
Sbjct: 44  SRVSDLLVHIPHRYLDFSSETSIAYTTIGTDVTIRAKVEK---ITVKHPRPRMSIVEVEA 100

Query: 96  -DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDV- 151
            D TG +T +FF  +   +     EG ++  +G +        M  P +  I   S+ + 
Sbjct: 101 VDATGVMTAVFF--RQPWVAQQLHEGDEVAFSGTMTFAYGFHQMKAPFFEVITTESEKMK 158

Query: 152 NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
           +   I  V+    G+S    ++II  AL+    + +W+   L+  + F ++A A   +H 
Sbjct: 159 SHAKILPVHPATEGISPAWMRRIISAALADQGDVLDWLPARLVASRGFMTLARALREVHF 218

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI--NVEGKIAQKILRNI 269
           P           AR RLAYDELL  Q+ALL  R+ F+ E   P    ++G   + +L  +
Sbjct: 219 P---SSMAAAERARRRLAYDELLCLQMALL-ARRTFECEGDTPFAHTIDGSKKRALLAAL 274

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q +A  DIL DM+    M R+L GDVG+GKT+VA +A+AA  ++G QA +MAP
Sbjct: 275 PFELTEEQRTAAHDILHDMAAPEIMNRLLLGDVGTGKTVVAALALAAVADSGTQAAMMAP 334

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+Q+ E I        I   ++TG+ P A R     R+A G   +I GT AL  + 
Sbjct: 335 TSVLAKQYAEKIGPLLTAADIPWALVTGSTPAAERTAIENRLATGAISVIFGTSALLSEG 394

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I + +L L+++DEQHRFGV QR  L +K +   +L MTATPIPRTL L+  GDI +S+I 
Sbjct: 395 INFRQLTLIVIDEQHRFGVNQRSALRKKGSGVDLLAMTATPIPRTLALSIYGDIALSRIA 454

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSV---VE 505
            +P     +KT ++  N +D     ++  ++ G++AY +CP I+E  E +N   V   V+
Sbjct: 455 HRPLAGAGLKTELLQSNNLDLAYGAVRDAVAAGQQAYVVCPLIDETDEGTNLDDVPPNVQ 514

Query: 506 RFNSLHEHFTS------------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               LH    +             + I+ GRMS  +K+ VM+ F++G   +L++TTVIEV
Sbjct: 515 TQTKLHSALATYQALQRGVFSDLRLGILTGRMSSAEKDEVMEKFRSGDLDVLVSTTVIEV 574

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GIDV +A++++I NA+ FGLA LHQLRGRVGRG       L        ++  RL+ L+ 
Sbjct: 575 GIDVPNATVMLIYNADRFGLATLHQLRGRVGRGSLPGKVFLNSDAKRGTSARRRLAALEA 634

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF +AE DLK R+EGE LG +QSG     IA       ++E A KDA+ +  +DP+L
Sbjct: 635 TADGFKLAELDLKLRREGETLGYRQSGNATLKIADLYGDADIIETAYKDARSLYRRDPEL 694


>gi|315303712|ref|ZP_07874226.1| ATP-dependent DNA helicase RecG [Listeria ivanovii FSL F6-596]
 gi|313627925|gb|EFR96544.1| ATP-dependent DNA helicase RecG [Listeria ivanovii FSL F6-596]
          Length = 457

 Score =  343 bits (881), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 182/441 (41%), Positives = 285/441 (64%), Gaps = 5/441 (1%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  ++ + ++PF+ TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 7   EKSGGISINYDVEDLRQYIDSLPFALTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 66

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   + V ++T ++    R++ 
Sbjct: 67  VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDVTVGLLTSSVKGKRRKEL 126

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 127 LAMLENGSVDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRILREKGAYPDVLFMT 186

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 187 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHEMLDRVIGFMEKEIDKGHQVYI 246

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 247 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYRPGLMHGKLLPADKEQIMRDFNDKKIDCL 306

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 307 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 365

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAK 664
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+DA 
Sbjct: 366 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAV 424

Query: 665 HILTQDPDLTSVRGQSIRILL 685
           H++ ++  L + + + +  LL
Sbjct: 425 HMIFEENMLENNQYEKLVALL 445


>gi|145295467|ref|YP_001138288.1| RecG-like helicase [Corynebacterium glutamicum R]
 gi|140845387|dbj|BAF54386.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 707

 Score =  343 bits (881), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 218/638 (34%), Positives = 347/638 (54%), Gaps = 56/638 (8%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101
           +LL +H   +        I + +E  +VTI G ++    S+    +  YK+ +   T  I
Sbjct: 33  ELLRHHVRKYSHHGSGVGIGDATEGDLVTIVGQVAFAKQSYTQSGKMLYKVTVLTETERI 92

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI----------------- 144
            + FF  K   +  +  EG +   TGK+K  +N   + HP +I                 
Sbjct: 93  GISFFGAK--HIPRLLPEGTRALFTGKVKFFRNEPQLSHPEFIVIPDPGSGRRLTATGGM 150

Query: 145 -----FHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ 195
                + + ++V   L++     +Y+    ++       +   L  +PV+ E +    + 
Sbjct: 151 KSLAAYGDVEEVALRLVDREYIPIYAGTATMTTWRIMAAVQRVLETMPVIKEPLS---VV 207

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255
            +  PS  EA   IH+P      E  S    RL Y+E L+    + + R   K     P+
Sbjct: 208 PEGMPSFDEAIRGIHDP----GHESPSTFINRLKYNEALSLATVMAIRRADTKNRKAPPM 263

Query: 256 NVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
               K  Q +L + + F  T  Q+  I++I  D+ Q+  M R+LQG+VGSGKT+V+LIAM
Sbjct: 264 PRALKGHQHMLIDALNFQLTAGQKQVIREISADIEQRVPMSRLLQGEVGSGKTIVSLIAM 323

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRKALERIA 372
             A+++G Q  ++AP  +LA QH   + K   +  + + ++  TG+M    +++AL  I 
Sbjct: 324 LQAIDSGRQCAMLAPTEVLATQHARSLSKTLDDAGLDINVVLLTGSMSTGAKKEALLEII 383

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTAT 429
            G A I++GTHAL QD+++++ L LV+VDEQHRFGV+QR +L  K      PH+L+MTAT
Sbjct: 384 SGDADIVVGTHALIQDTVEFFDLGLVVVDEQHRFGVEQRDQLRTKGREGLTPHLLVMTAT 443

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAY 486
           PIPRT+ +T  GD+ +S + E P GR+PI+T +IP ++   +    ER+   +  G++AY
Sbjct: 444 PIPRTIAMTVFGDLAVSTLRELPGGRRPIQTSVIPDHKPGWVKRGWERIGEEVLAGRQAY 503

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP+IE +       V+E    L E      ++ ++HGRM    K+SVM  F  G   +
Sbjct: 504 VVCPRIEGEG-----GVLEIHAYLSEQVYPGLNVGMLHGRMDTDLKDSVMQEFAQGEIDI 558

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+ATTVIEVGIDV +A++++I  AE FG++Q+HQLRGRVGRG+  S C+L  H    ++S
Sbjct: 559 LVATTVIEVGIDVANATVMLIREAERFGVSQIHQLRGRVGRGQHDSLCLL--HTTFDEDS 616

Query: 605 --YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
               RL+ +  T DGF ++E DL+ R+EG++LG +QSG
Sbjct: 617 PQGQRLAAISTTTDGFQLSELDLQVRQEGDVLGTRQSG 654


>gi|313904074|ref|ZP_07837454.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
 gi|313471223|gb|EFR66545.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
          Length = 694

 Score =  343 bits (880), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 206/561 (36%), Positives = 320/561 (57%), Gaps = 15/561 (2%)

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH-YIFHNSQDVN 152
           L D TG + + +F+     L+N    G      G +     R IM HP  Y       + 
Sbjct: 87  LQDETGTLQVNWFH--MPFLRNTIKIGVYYVFRGPVIAKGGRKIMEHPQLYTREEYMKLT 144

Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
             ++  +Y L  GL+ ++ +K + + L       E +   + +++    I  A + IH P
Sbjct: 145 GQML-PIYPLTAGLTNNMVRKAVTQLLEMQRTEEEILPDTVREEEGLCEINFARSQIHFP 203

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPF 271
             +++      AR RLA++E     + +  +R      E   P+  E    + ++ ++P+
Sbjct: 204 ENSENLLI---ARNRLAFEEFFLFLLGVERLRAINDTTENHFPMR-EVWETEDVIASLPY 259

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T +Q++   +I +D++ K  M R++QGDVGSGKT++A +AM  A E G Q+ +M P  
Sbjct: 260 KLTGAQQAVWGEIEKDLASKRLMNRLVQGDVGSGKTILAFLAMIMAYENGFQSALMVPTE 319

Query: 332 ILAQQHYE-FIKKYTQN--TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           +LA QHY+ F +   +N  T +   ++ G+     +R+  E+I+ G+   IIGTHAL Q+
Sbjct: 320 VLAVQHYQAFTELLEKNGITDLCPVLLRGSCTAKEKREIYEQISSGKTRAIIGTHALIQE 379

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++Y KL LVI DEQHRFGV+QR  L  K   P+VL+M+ATPIPRTL +   GD+DIS +
Sbjct: 380 KVEYEKLGLVITDEQHRFGVKQREALAGKGYPPNVLVMSATPIPRTLAMILYGDLDISIL 439

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            + PA R PIK  ++  +  D     ++  +  G + Y ICP +E  +E +  +V E   
Sbjct: 440 NDMPAHRLPIKNCVVNTSYRDTAYRFMRKEVEAGHQVYVICPMVEPNEELSCENVTEYAQ 499

Query: 509 SLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            L   F S IA+  +HG+M   +K+ +MD+F  G  K+L++TTVIEVG++V +A++++IE
Sbjct: 500 KLKNVFGSEIAVEALHGQMRPKEKQEIMDAFARGEIKILVSTTVIEVGVNVPNATVMMIE 559

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           NAE FGLAQLHQLRGRVGRG+  S CI +      K +  RL +L ++ DGF IAEEDLK
Sbjct: 560 NAERFGLAQLHQLRGRVGRGDAQSYCIFM-QGDGKKETSERLDILNHSNDGFYIAEEDLK 618

Query: 627 QRKEGEILGIKQSGMPKFLIA 647
            R  G++ G++QSG+  F IA
Sbjct: 619 LRGPGDLFGVRQSGIALFQIA 639


>gi|297559189|ref|YP_003678163.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843637|gb|ADH65657.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 747

 Score =  343 bits (880), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 219/642 (34%), Positives = 336/642 (52%), Gaps = 57/642 (8%)

Query: 85  QKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
           Q RR   ++   + DGTG + L FF R +   +     GR    +G++   K R  + HP
Sbjct: 89  QGRRRMDMMEATVTDGTGRLHLTFFNRGS-YHQGALVPGRLAMFSGRVSTFKGRRQLDHP 147

Query: 142 HYIF-----HNSQDVNFPLIE--AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194
            Y       H  +       E   VY    GL      + +   L+ +  LP+ +  +L 
Sbjct: 148 QYELLDEDGHEGERARAYAEELIPVYPAVKGLDSTTIARTVDIVLADVDSLPDPLPPELR 207

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWT--SPARERLAYDELLAGQIALLLMRKQFKKEIG 252
           +++    +A+A   IH P      EW+    AR RL +DE    Q+AL   R + +    
Sbjct: 208 ERRGLLGVADALRRIHRP-----AEWSDVGAARRRLKWDEAFVLQLALAQRRHRAEDLPA 262

Query: 253 IP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            P     G +       +PF+ T+ Q    + + + +   + M  +LQGDVG+GKTLVAL
Sbjct: 263 KPRPGAVGGLLDAFDAQLPFTLTEGQREVGERLAERLDAAHPMHCLLQGDVGAGKTLVAL 322

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMP 360
            AM   V++GGQAV++AP  +LAQQH+  I                     V ++TG+M 
Sbjct: 323 RAMLRVVDSGGQAVMLAPTEVLAQQHHRSISAMLGALGRAGQIDGAENATRVALLTGSMN 382

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            A RR+AL   A G A I++GTHAL Q+ + +  L LV+VDEQHRFGV+QR  L +KA  
Sbjct: 383 AAARREALLDAASGAAGIVVGTHALLQEHVSFADLGLVVVDEQHRFGVEQRDALREKAVD 442

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIER 474
             PHVL+MTATPIPRT+ +T  GD+D+  +T+ P GR P+ T ++P +     +    ER
Sbjct: 443 GRPHVLVMTATPIPRTVAMTVYGDLDVVALTQLPTGRAPVSTHVVPASEKPHFLARAWER 502

Query: 475 LKVVLSEGKKAYWICPQIEE---------------KKESNFR---SVVERFNSLHEHFTS 516
           ++     G +A+ +CP+I +               ++ +  R   +V++    L E   S
Sbjct: 503 IREEAGGGHQAFVVCPRIGDDAKEEAEEEVGAGDGEEAAGARPPLAVLDVAARLREGPLS 562

Query: 517 S--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              + ++HGRM+  DK++VM  F  G    +++TTVIEVG+DV +A++++I +A+ FG++
Sbjct: 563 ELRVEVLHGRMAPDDKDAVMRRFSAGDTDAVVSTTVIEVGVDVPNATVMVIMDADRFGVS 622

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG+    C+L+        +  RL+ +  T DGF ++  DL+ R+EG++L
Sbjct: 623 QLHQLRGRVGRGQLPGLCLLVTDAEEGSPARERLAAVAATTDGFELSRVDLEMRREGDVL 682

Query: 635 GIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTS 675
           G  QSG    L     L D  L+  AR++A   +  DP LT 
Sbjct: 683 GDSQSGARSSLRMLTLLKDEELIGEAREEATAYVAADPGLTG 724


>gi|331698532|ref|YP_004334771.1| ATP-dependent DNA helicase RecG [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953221|gb|AEA26918.1| ATP-dependent DNA helicase RecG [Pseudonocardia dioxanivorans
           CB1190]
          Length = 748

 Score =  343 bits (880), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 220/693 (31%), Positives = 365/693 (52%), Gaps = 70/693 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99
           DLL ++P  ++DR     IS +     VT+   + + +   ++ RR      ++ +D  G
Sbjct: 42  DLLRHYPRRYVDRGKLSDISGLEIGEHVTVVAKVEKATLRDMRSRRGKLLNVVIRDDKGG 101

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEA 158
            ++  FF      + +V   G +   +GK+   ++++ + HP +      +DV  P + +
Sbjct: 102 RLSCTFF--NGYKVSHVLTPGVRALFSGKVGVFQSQLQLTHPEFEPLEEGEDVR-PFV-S 157

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           VY     L+     + + + L +L    + + +D+ +++  P +  A   IH P    D 
Sbjct: 158 VYPAVDKLNSWDIARCVRQVLDQLDDPTDPLPEDIRRREKLPELGRALRRIHLPETEADH 217

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI--PINVEGKIAQKILRNIPFSPTKS 276
                AR RL +DE L  Q+AL L R+   +  G   P    G +       +PF+ T  
Sbjct: 218 H---AARARLVWDEALGVQLALALRRRHATERPGTASPPRA-GGLLDAFDARLPFALTDG 273

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q +   +I  D++++  M R++QGDVG+GKT+VAL AM   V++G QA ++AP  +LA Q
Sbjct: 274 QRAVGTEIAADLARETPMNRLVQGDVGAGKTVVALRAMLQVVDSGRQAAMLAPTEVLAAQ 333

Query: 337 HYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           H   ++                + T+I   ++TG++  A RR+A+  +  G A I++GTH
Sbjct: 334 HARSLRSLLGPLGRAGELDGAEEATRIT--LLTGSLGTAARRQAMLDVQSGAAGIVVGTH 391

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGD 442
           AL QD + +  L LV+VDEQHRFGV+QR  L  +    PH+L+MTATPIPRT+ +T  GD
Sbjct: 392 ALIQDKVGFADLGLVVVDEQHRFGVEQRDALRGRGERTPHMLVMTATPIPRTVAMTVYGD 451

Query: 443 IDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQI--EEKK 496
           +++S +TE P GR PI T ++P       ++ V +R++  +++G + Y +CP++  +  K
Sbjct: 452 LEVSALTELPRGRSPISTTVVPAGEKPAWLERVWQRIREEVADGHQVYVVCPRVGGDPAK 511

Query: 497 ESNFR-------------------------------SVVERFNSLHEHFTSS--IAIIHG 523
             +                                 +V+E    L E   +   + I+HG
Sbjct: 512 ADDGDLFEGELVDLDDPDPDVGGGAGSDDGARRPPLAVLEVAPKLAEGPLAGLRLGILHG 571

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           ++   +K++ M +F+ G   +L+ATTVIEVG+DV +++ ++I +A+ FGL+QLHQLRGRV
Sbjct: 572 KLPADEKDATMRAFEAGEIDVLVATTVIEVGVDVPNSTGMVILDADRFGLSQLHQLRGRV 631

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRGE    C+L+   P    +  RL  + +T DGF +A  DL+ R+EG++LG  QSG   
Sbjct: 632 GRGEAPGVCLLVTDVPAGTTARERLDAIASTTDGFELARLDLELRREGDVLGAVQSGKRS 691

Query: 644 FLIAQPEL-HDSLLEIARKDAKHILTQDPDLTS 675
            L     L H++++E AR  A  I+  DPDL  
Sbjct: 692 TLKLLSLLRHETVIEKARVYATDIVDHDPDLAG 724


>gi|317495415|ref|ZP_07953784.1| ATP-dependent DNA helicase RecG [Gemella moribillum M424]
 gi|316914474|gb|EFV35951.1| ATP-dependent DNA helicase RecG [Gemella moribillum M424]
          Length = 669

 Score =  343 bits (879), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 240/672 (35%), Positives = 364/672 (54%), Gaps = 32/672 (4%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLF---YHPSSFIDRHYRPK 60
            +N L   + T +GVGKKY   L+++       E   I D+L+   Y  SS  D     K
Sbjct: 1   MINILEKSVETIKGVGKKYLQTLNEL-------EIYTIRDVLYNIPYRVSSSTDFSMSVK 53

Query: 61  ISEISEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
                 E++V  TG +    S Q    KR      L+  TG I ++FF +    LK    
Sbjct: 54  ----DNEKVVA-TGKVETRVSTQFYGNKRSRSFFSLSTPTGSIKIVFFNQ--HYLKKNLL 106

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EGR I V G   K  N I      +      + N   IE  Y L  G++   F K++ E+
Sbjct: 107 EGRDIVVKGIYNKANNTITASSISFGKEEKAENN-DKIEVFYHLKQGITQKRFIKLVEES 165

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
            + +    E +  DL+  ++F  I +   I++     KD E    AR+  A+ EL   Q+
Sbjct: 166 FNMID--EENVILDLV-PENFKGIWKLEKILYTLHFPKDVEQFDKARKMYAFHELFNYQL 222

Query: 239 ALLLMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            L L     + E     I +     Q+  + +PFS T +Q+  I +I  D++   +M R+
Sbjct: 223 KLQLQNINSRLEDERYRICINNNDIQEFTQQLPFSLTNAQKRVIDEIAADLNTPYKMDRL 282

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT VA   +   +++G QA IMAP  ILA QH+E   ++ +   I + ++T 
Sbjct: 283 LQGDVGSGKTAVAAATLYGVIKSGYQAAIMAPTEILANQHFETFFEFFKELNISIALLTS 342

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           N P+  R K L  +  G+  ++IGTH+L QD + +  L  VI DEQHRFGV+QR  L+ K
Sbjct: 343 NTPKKERNKILSLLEVGEVELLIGTHSLIQDDVIFKNLKYVITDEQHRFGVRQRKILSNK 402

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             A + L+MTATPIPR+L +T + DI +S I E P+GRK ++T         +V++ + +
Sbjct: 403 GEAVNSLMMTATPIPRSLAITLITDIKVSTIDELPSGRKKVQTYKANNKSFYKVLDNIMM 462

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMD 535
            L  G++ Y +CP IEE ++ + ++V + +  + E+   S  IAI+HG+MS+ +K+ +++
Sbjct: 463 ELDSGRQGYVVCPLIEESEKMDLQNVEDIYEKIKEYLPDSYKIAILHGKMSNKEKDEIVE 522

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F N    +LI+TTVIEVG++V +A+ +I+ +A  FGLA LHQLRGRVGR +  S CIL+
Sbjct: 523 RFLNKEIHILISTTVIEVGVNVPNATFMIVVDAHRFGLATLHQLRGRVGRSKFQSYCILI 582

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
                SK+    +  L+N  DGF IAE DLK+R  G+  G KQSG+P F +A       L
Sbjct: 583 TD---SKSERIDIMCLEN--DGFKIAEFDLKKRGPGDFFGTKQSGVPSFKVADLINDVDL 637

Query: 656 LEIARKDAKHIL 667
           + +A++ A  I+
Sbjct: 638 MYLAKRLALKII 649


>gi|237743344|ref|ZP_04573825.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 7_1]
 gi|229433123|gb|EEO43335.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 7_1]
          Length = 689

 Score =  343 bits (879), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 226/608 (37%), Positives = 347/608 (57%), Gaps = 20/608 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEI 101
           DL++Y P ++ DR    KI E+     V +   +    +  ++  ++  K ++ DGTG +
Sbjct: 38  DLIYYFPRAYDDRTNIKKIGELKFNEYVVLKATVMSAVNLTVRSGKKIVKAMVTDGTGIM 97

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160
            +L+F      +K     G +    G+ KK      +++P Y +F   Q V+   I  +Y
Sbjct: 98  EILWF--GMPYIKKSLKIGEEYLFIGQTKK-SAVFQLINPEYKLFSVQQKVSKNEILPIY 154

Query: 161 SLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           S    ++ +  +K++ + L   L    E I  +L+++        A   IH P   K+ E
Sbjct: 155 SSNKNITQNSLRKLVEKFLVNFLNYFKENIPDELIKEYKIMERKSAIKNIHYPVSMKEIE 214

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQ 277
               A+ R A +ELL  ++ +L  R   +        VEGK    +  L  + F+ T +Q
Sbjct: 215 ---EAKRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKVKNFLSQLTFNLTNAQ 271

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +  IK+I  ++S    + R++QGDVGSGKT+VA++ +    E G Q  +MAP  ILA QH
Sbjct: 272 KKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGYQGALMAPTEILANQH 331

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y  IK+  +   + VE++T ++    + + LE +A+G   I+IGTH+L +D + + KL L
Sbjct: 332 YLGIKERLEKIGLRVELLTSSIKGKKKNEILEGMANGDIDIVIGTHSLIEDDVIFKKLGL 391

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +++DEQHRFGV QR KL +K    ++L+M+ATPIPR+L L+  GD+D+S I E P GR P
Sbjct: 392 IVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGDLDLSIIDELPPGRTP 451

Query: 458 IKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           IKT  I     DE +E++   +    + G +AY++ P IE   +   +SV +    +   
Sbjct: 452 IKTKWIA---NDEDLEKMYDFIYKKVNAGNQAYFVAPLIETSDKMALKSVDKVSEEIERK 508

Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           F++  I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  ++I+ I NAE FG
Sbjct: 509 FSNKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFG 568

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+ LHQLRGRVGRG + S C L+ +  +++NS  RLS+++ TEDGF IAEEDLK R  GE
Sbjct: 569 LSALHQLRGRVGRGSKQSYCFLISN-SITENSKQRLSIMEETEDGFRIAEEDLKLRNSGE 627

Query: 633 ILGIKQSG 640
           I G++QSG
Sbjct: 628 IFGLRQSG 635


>gi|251772283|gb|EES52853.1| putative ATP-dependent DNA helicase (RecG) [Leptospirillum
           ferrodiazotrophum]
          Length = 711

 Score =  342 bits (878), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 223/668 (33%), Positives = 361/668 (54%), Gaps = 50/668 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L APLS+F  +G +    L +         +  +DLL+  P  + DR  R  +SE++E  
Sbjct: 11  LTAPLSSFPSIGPRRQARLER------RGLSTVLDLLYCFPYRYEDRRIRLVVSELTEG- 63

Query: 69  IVTITGYISQHSSFQLQ-----KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                G+++   S + +     K    +  + D +GEI +++F    E L     EG + 
Sbjct: 64  --AEQGFVATVRSIRKKIVPKIKAPIIEATVYDRSGEIPVVWF--GQEYLLKHLPEGSQA 119

Query: 124 TVTGKIKK--------LKNRIIM-VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKI 174
              GK++         L++ ++  + P      S  +    I  VY    GLS  +F++I
Sbjct: 120 FFFGKVEYSSYSRGLVLRSPVVEPIDPEQGLRRSYHIG--RIVPVYREEAGLSTGVFRRI 177

Query: 175 IVEALSRL-----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD-----FEWTSPA 224
           + + L  L       LPE + ++      FP+I E    +H PR+ +           P 
Sbjct: 178 VGDVLRALWGEAFDPLPESVCREAHLMGWFPAIVE----MHFPRETERPMEELLLPGYPP 233

Query: 225 RERLAYDELLAGQIALLLMRK--QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
           R+R+ ++E    +  ++L R+       + +P            R  PF  T +Q+ A +
Sbjct: 234 RDRIVFEEFFLLEYLMMLRRQGVHHSGRMWVPAEEGHDPVAAFERQAPFPLTGAQQRACR 293

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I +D +Q + M R L GDVGSGKTLVA  AM  A+ AG Q   +AP  ILAQQH   + 
Sbjct: 294 EIARDFAQPHPMNRFLLGDVGSGKTLVAAFAMLQALRAGCQTAFLAPTEILAQQHCRTLA 353

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
              +    +  +++ ++    RR+ L  IA G+  +I+GTHA+ ++ + + KL LV++DE
Sbjct: 354 ALLKEEPPV--LLSQSVKGLDRRRLLSGIAEGRHRVIVGTHAIIEEGVVFEKLGLVVIDE 411

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           QH+FGV QR  L  K   P +L+MTATPIPR+L L+  GD++IS + E P GR+P++T I
Sbjct: 412 QHKFGVAQRKALWSKGPNPDILVMTATPIPRSLALSYYGDLEISLLDELPPGRQPVETRI 471

Query: 463 IPINRIDEVIERLKV--VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519
           +P  + DE   + KV  VL+  ++ + + P +EE ++ + ++  +    L   F    + 
Sbjct: 472 VP--KADESFWKKKVAPVLARSEQVFVVLPLVEESEKVDAKNAQDVHGYLSSIFPHVRVG 529

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           ++ GRM+  +KESVM++F+ G   +L+ATTVIEVG+D+  AS++++ENAE FGLAQLHQL
Sbjct: 530 LLTGRMAGEEKESVMEAFRTGEISILVATTVIEVGVDIPRASVMVVENAERFGLAQLHQL 589

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           RGR+GRG    +  L+    +  +   RL +L+   DGF +AEEDL+ R  GE +G++QS
Sbjct: 590 RGRIGRGGLPGTFYLVPGEGMGDDGRRRLRILEEYSDGFHVAEEDLRMRGPGEFMGVRQS 649

Query: 640 GMPKFLIA 647
           G+P F++A
Sbjct: 650 GLPMFVVA 657


>gi|119953366|ref|YP_945575.1| ATP-dependent DNA helicase RecG [Borrelia turicatae 91E135]
 gi|119862137|gb|AAX17905.1| ATP-dependent DNA helicase RecG [Borrelia turicatae 91E135]
          Length = 689

 Score =  342 bits (878), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 231/659 (35%), Positives = 344/659 (52%), Gaps = 36/659 (5%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH---YRPKI 61
           FL+     L    G+G K       I    N N T   +L+ Y P  + DR      P  
Sbjct: 4   FLHEFQYDLQGISGLGNK------GIDRLHNLNITNIKELIEYFPKKYEDRQNIKTFPDP 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFEG 120
            E+    ++T+   + +H +F    ++  KI+      EI  +L F R    L+ VF  G
Sbjct: 58  LEVRSCELMTVF-VVLEHRNFGSNSKKNLKIIAQSENDEIFEILLFNRG--FLEGVFKVG 114

Query: 121 RKITVTGKIKKLKNRIIMVHPHY---IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           +K  +  K        +    ++   +F  + +  F  I  VYSL  GL+       + E
Sbjct: 115 QKFYIYSKFNYSDYTQMWSCSNFDSEVFSYNPE-RFKKIMPVYSLGEGLTSKKISSYVKE 173

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA- 235
           AL   L      I   L+ K S  S+ +A N IH P      E    A++ L Y E+   
Sbjct: 174 ALIYFLKFGKSDIPDFLINKYSLLSLHDALNEIHFP---TSLEMLDRAKKTLIYREIFLL 230

Query: 236 -----GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
                G+ +L+ +RK    E  +P+N+  ++  K+    PF  TK QE  I +I+ D+  
Sbjct: 231 QFFSRGKSSLVFLRK----EKHLPMNLLDQVVLKL----PFRLTKDQEVVISEIIDDLKS 282

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              M R+LQGDVGSGKTLVA ++    +EAG Q  +M P  +LA+QHY  +    ++  I
Sbjct: 283 NKPMNRLLQGDVGSGKTLVAFLSSIPLIEAGYQVALMVPTDLLARQHYNNLSNMLKDFNI 342

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            + ++TG++   +R   LE+I  G   ++IGTHA+F    ++ KL  VI+DEQH+FGV+Q
Sbjct: 343 SIALLTGSLKTKNRNDVLEKIQSGTYSLVIGTHAIFSQRTKFKKLAYVIIDEQHKFGVEQ 402

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           R KL  K     +LLM+ATPIPR+L LT  GD+++S I   PAGR+P+ T +      D+
Sbjct: 403 REKLKNKGEEVDMLLMSATPIPRSLALTLFGDLEVSLIKRGPAGRRPVTTYLAKHGNEDK 462

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDID 529
           V E L   L +G + Y++ P I   ++ N + V     +L   F   S+A+IH ++    
Sbjct: 463 VYEFLNNELGKGHQVYFVYPLISSSEKFNLKDVTSMCLNLKNIFVEYSVAMIHSKLESHV 522

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE +M  F      +L++T+VIEVGID ++A+ I++E+AE FGL+ LHQ+RGRVGRG   
Sbjct: 523 KEEIMRDFYLKKIDILVSTSVIEVGIDCLNATCIVVEHAERFGLSALHQIRGRVGRGSLK 582

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
           S   LLY  PL++    RL  +K   DGF IAEEDLK R  G + G++Q+G  K  IA 
Sbjct: 583 SFLFLLYKEPLTEAGKFRLKTIKENIDGFKIAEEDLKLRGPGNLFGLEQTGYLKLKIAD 641


>gi|269837932|ref|YP_003320160.1| ATP-dependent DNA helicase RecG [Sphaerobacter thermophilus DSM
           20745]
 gi|269787195|gb|ACZ39338.1| ATP-dependent DNA helicase RecG [Sphaerobacter thermophilus DSM
           20745]
          Length = 824

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 230/685 (33%), Positives = 370/685 (54%), Gaps = 37/685 (5%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFID-RHYRPKISE 63
           ++ L  P++T  GVG + +  L  +         R + DLL+  P    D     P  S 
Sbjct: 138 VSALTDPVTTLPGVGAQRAKQLEAL-------GVRTVEDLLYLTPRRHKDYSRIEPIGSS 190

Query: 64  ISEERIVTITGYISQHSSFQLQKRRPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFE 119
           +   R  TI G +    S   Q+ R  K +    + D TG +  ++F      L      
Sbjct: 191 LFFNRECTIKGTVV---SIDQQRTRTGKTMVVAEIADDTGSVQAIWF---NPYLARQLHP 244

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGL---SVDLFKKIIV 176
           G  I V+G+I++ +  +++ +P +   +++ ++   +  +Y L  GL    V    ++ +
Sbjct: 245 GLPIAVSGRIERQRGTLVLRNPEWELLDAEMLHTGRLVPIYPLTRGLYQKQVRTLTRMAL 304

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           +A + L   P  + +++ Q+     +A+A   +H P    D      AR RLA+DE L  
Sbjct: 305 DAAAHLIADP--LPEEIRQRHGLLPLAQALEAVHYPDSEAD---ERAARRRLAFDEFLVL 359

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           QI L+  + +++ + G    ++ ++       +PF+ T +Q  A+ +IL DM+      R
Sbjct: 360 QIGLVQRKVEWQAQTGHAFRIDEELLATFEDRLPFTLTAAQSRALGEILADMASPRPASR 419

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYT---QNTQIIV 352
           +LQGDVGSGKT+VA  A   AV  G QA I+AP  ILA+QH   F   Y    +  +  +
Sbjct: 420 LLQGDVGSGKTVVAAAAALVAVADGFQAAILAPTEILAEQHARNFASLYDVLPEERRPRL 479

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+ P   R +    +  G   I+IGTHA+ ++ +++ +L L ++DEQHRFGV QR 
Sbjct: 480 ALLTGSTPAGEREEIDAGLRSGTIDILIGTHAILEERVEFARLGLAVIDEQHRFGVVQRA 539

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           +L  K   P VL+MTATPIPR+L L   GD+D+S I E P GR+ I T  I  +R  +  
Sbjct: 540 RLRAKGYNPDVLVMTATPIPRSLALVLHGDLDVSIIDELPPGRQKIATHWIEGDRRPDAY 599

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDK 530
             ++  +  G++A+ I P +EE +  + R+    +  L  E F    + ++HGRM   +K
Sbjct: 600 RFIRKEVEAGRQAFIIYPLVEESEAIDARAATAEYERLSTEVFPDLRLGLLHGRMRPAEK 659

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           +++M +F++    +L++T+V+EVGIDV +A++++IE A+ FGLAQLHQ RGRVGRG   S
Sbjct: 660 DAIMTAFRDHEIDILVSTSVVEVGIDVPNATVMLIEGADRFGLAQLHQFRGRVGRGAARS 719

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            CIL+    +S+    RL+ L  T+DGF +AE DL+ R  GE  G +QSG+P    A   
Sbjct: 720 VCILVAD-DVSEEGQRRLNALVETQDGFRLAEIDLEIRGPGEFFGTRQSGLPDLRFAS-- 776

Query: 651 LHD-SLLEIARKDAKHILTQDPDLT 674
           L D   L+ AR++A  IL+ DP L+
Sbjct: 777 LGDLGTLQRAREEAHRILSADPTLS 801


>gi|329767219|ref|ZP_08258746.1| ATP-dependent DNA helicase RecG [Gemella haemolysans M341]
 gi|328836886|gb|EGF86533.1| ATP-dependent DNA helicase RecG [Gemella haemolysans M341]
          Length = 669

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 226/669 (33%), Positives = 362/669 (54%), Gaps = 28/669 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +N L   + T +GVGKKY   L+++       E   I  + Y+    +        S   
Sbjct: 2   INILEKSVGTIKGVGKKYLQALNEL-------EIYTIRDILYNIPYRVSSSTDFSSSVKD 54

Query: 66  EERIVTITGYISQHSSFQLQKRRPYK--ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            E+++T TG +    S Q    R  +    L+  +G I ++FF +    LK    EGR +
Sbjct: 55  NEKVIT-TGKVETRVSTQFYGNRRSRSFFTLSTSSGSIKIVFFNQ--HYLKKNLVEGRDV 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V G      N I      +     +      IE  Y L  G++   F K++ E+   + 
Sbjct: 112 VVKGTYNAANNTITASSVSFNIM-EEKTKGDTIEVFYHLKQGITQKKFIKLVEESFKMID 170

Query: 184 VLPEWIEKDLLQK--KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              E +  DL+ +  K    +      +H P+ +++F+    AR+  A+ EL   Q+ L 
Sbjct: 171 --GENVILDLVPENFKGIWKLERILYTLHYPKNSEEFD---KARKMFAFHELFNYQLKLQ 225

Query: 242 LMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L     + ++    + V  K  +    ++PF+ T +Q   I +I+ D+++  +M R+LQG
Sbjct: 226 LQNINSRIEDTRYSVGVNNKDIKVFKDSLPFTLTGAQSRVIDEIVTDLNEPYKMDRLLQG 285

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT VA   + A ++AG Q  IMAP  ILA QH+E   ++ ++  I V ++T + P
Sbjct: 286 DVGSGKTAVAAATLYATIKAGYQTAIMAPTEILANQHFETFFEFFKDLNISVALLTSSTP 345

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           +  R   L  +  G+  ++IGTH+L Q+ +++  L  VI DEQHRFGV+QR  L+ K  A
Sbjct: 346 KKERNTILSLLEVGEIELLIGTHSLIQEDVKFNNLKYVITDEQHRFGVRQRQLLSNKGEA 405

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            + L+MTATPIPR+L +T + DI +S I E PAGRK ++T         +V++ +++ L 
Sbjct: 406 VNSLMMTATPIPRSLAITLITDIKVSTIDELPAGRKKVQTYKANNKSFYKVLDNIRMELD 465

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFK 538
            G++ Y +CP IEE ++ + +++ E + ++  +      IAI+HG+MS+ +K+++++ F 
Sbjct: 466 NGRQGYVVCPLIEESEKIDLQNIEETYENIKNYLPDDYKIAILHGKMSNKEKDAIVEKFL 525

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                +LI+TTVIEVG++V +A+ +II +A  FGLA LHQLRGRVGR +  S CIL+   
Sbjct: 526 AKEIHILISTTVIEVGVNVPNATFMIIVDAHRFGLATLHQLRGRVGRSKYQSYCILVTD- 584

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             SK+    +  L+N  DGF IAE DLKQR  G+  G KQSG+P F +A       L+ +
Sbjct: 585 --SKSERIDIMCLEN--DGFKIAEFDLKQRGPGDFFGTKQSGVPSFKVADLINDVDLMYL 640

Query: 659 ARKDAKHIL 667
           A+K A  I+
Sbjct: 641 AKKLAVKII 649


>gi|118617568|ref|YP_905900.1| ATP-dependent DNA helicase RecG [Mycobacterium ulcerans Agy99]
 gi|118569678|gb|ABL04429.1| ATP-dependent DNA helicase RecG [Mycobacterium ulcerans Agy99]
          Length = 743

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 216/660 (32%), Positives = 352/660 (53%), Gaps = 69/660 (10%)

Query: 43  DLLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQK---RRPYKILLN 95
           DLL ++P S+++    R    +  E+ E   +TI   I++  SF ++K   R   +I L 
Sbjct: 31  DLLRHYPRSYVEGGERRGTDDEQPEVGEH--ITIVDVITETKSFPMKKTPRRLCLRITLG 88

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-- 153
            G  ++T  FF    + +K    +  ++ ++G++   K  + + HP ++  +S D     
Sbjct: 89  SGRNKVTATFF--NADYIKKGLTKNTRVMLSGEVGYFKGVMQLTHPAFLILDSPDGQHHG 146

Query: 154 -----PLIEAVYSLPTGLSVDLFK-------------------KIIVEALSRLPVLPEWI 189
                 + +A  ++   L+++ F+                   K + + L     + E +
Sbjct: 147 TKSLKSIADASQAISGELAMEEFERRFFPIYPASTKVQSWDIFKCVRQVLEVFDPVDEPL 206

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              L  +    S  +A   IH    A+D      AR RL +DE +  Q AL+  R     
Sbjct: 207 PAALRAEHGLISEDDALRAIH---LAEDESEREQARRRLTFDEAVGLQWALVARRHGELS 263

Query: 250 EIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E G P       +A ++L  +PF PT  Q   + ++   ++    M R+LQG+VGSGKT+
Sbjct: 264 ESGPPAPARSDGLAAELLARLPFEPTAGQREVLDELSDGLAATRPMNRLLQGEVGSGKTI 323

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITG 357
           VA++AM   V+AG Q  ++AP  +LA QH   I                +    V ++TG
Sbjct: 324 VAVLAMLQMVDAGYQCALLAPTEVLAAQHLLSINDVLGPLAMGGQLGGADNATRVALLTG 383

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           +M    +++    IA GQ  I+IGTHAL QD+++++ L +V+VDEQHRFGV+QR +L  K
Sbjct: 384 SMTAGQKKQVRAEIASGQVGIVIGTHALLQDAVEFHNLGMVVVDEQHRFGVEQRDQLRAK 443

Query: 418 ATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDE 470
           A A   PH+L+MTATPIPRT+ LT  GD++ S + E P GR+PI T +I +       D 
Sbjct: 444 APAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPRGRQPITTNVIFVKDKPAWFDR 503

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS----LHEHFTSS------IAI 520
             +R+   ++ G++AY + P+I+E  ES+      R ++    L+    ++      +A+
Sbjct: 504 AWQRIVEEVAAGRQAYVVAPRIDESDESDKAENGARPSATAVGLYSRLQAAELAGLRLAL 563

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGR+S  +KE+ M +F+ G   +L+ TTVIEVG+DV +A+++++ +A+ FG++QLHQLR
Sbjct: 564 MHGRLSADEKEAAMAAFRAGNVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQLHQLR 623

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GR+GRGE  S C+L         +  RL  +  T DGF +AE DLK+R+EG++LG  QSG
Sbjct: 624 GRIGRGEHPSLCLLASWVSPGSPAGRRLRAVAETMDGFDLAELDLKERREGDVLGRNQSG 683


>gi|189219366|ref|YP_001940007.1| RecG-like helicase [Methylacidiphilum infernorum V4]
 gi|189186224|gb|ACD83409.1| RecG-like helicase [Methylacidiphilum infernorum V4]
          Length = 694

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 225/687 (32%), Positives = 359/687 (52%), Gaps = 42/687 (6%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+    VG++ +  L K+        +    LLFY P  + DR  +  +S  +++  +  
Sbjct: 6   LAKLEYVGQRRAFLLEKL------GISSLKTLLFYLPFRYEDRRLQKPLSLAADDEKILF 59

Query: 73  TGYISQHSSFQLQKRRPYKILL---NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
              + +    +L+ R   KI+L   +D   ++  ++F++   +L      GRK+ V G +
Sbjct: 60  KATVVEVKKERLKARNIIKIVLLSLDDHREKLVGIWFWK---VLPEYLSVGRKVAVYGTV 116

Query: 130 KKLKNRIIMVHPHYIFHNSQ-----DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           +K K +  M  P       +      ++   I  +YS  +GLS  + ++II   L ++P+
Sbjct: 117 RKFKGKWTMWQPEIECFEEEIQLQASLHISRIVPIYSTTSGLSQKILRQIIYSQLLKIPI 176

Query: 185 L---PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
               P  +  D       P++  A   IH P      E   P ++R+AY E    Q+ + 
Sbjct: 177 ESPDPYPMPAD----TPLPTLGFALRKIHFP---DTLEQIQPCKDRIAYHEFFIEQLRMA 229

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
             +K+  +      +    +    L ++PF+PT +Q+ A+++I +D+   + M R+L GD
Sbjct: 230 YRKKKRAEIKKRRPSRRFSLCPGFLSSLPFNPTSAQKKAMEEIDRDLESASPMNRLLLGD 289

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA+ A    VE G   + M+P G LA QHY  +KK+  +  + +  I  ++ Q
Sbjct: 290 VGSGKTLVAVYAAIKTVERGQNVLFMSPTGALASQHYLTLKKWLSSLAVPLFYIGRDVGQ 349

Query: 362 A-------------HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
                         H   +          + +GTHAL   S     L LVI+DEQH+FGV
Sbjct: 350 KEEFLPTDNENVFFHEHPSDLSPGSLPGKVFVGTHALLFRSFNPDSLGLVIIDEQHKFGV 409

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           +QR  L +KA  P +L MTATPIPRTL L+  GD+D S +   P  R  I T I     +
Sbjct: 410 EQRAALAKKALYPDILTMTATPIPRTLALSLYGDLDFSILDVPPINRGKIITAIRSSESL 469

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSD 527
            ++ E +K +L +G +AY + P I E  + +  S+ + +  L + F    + ++HG M  
Sbjct: 470 PKIWEFMKRLLRQGTQAYVVFPTIHESNDPDLPSLEKGYEELKKIFKEFRLGMVHGEMPP 529

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
           +++E V +SF+    +LL AT++IEVGID+ +A I+++  A  FGLAQLHQ+RGRVGRG 
Sbjct: 530 LEREVVFESFRKNEIRLLAATSIIEVGIDIPNARIMVVFGAHRFGLAQLHQIRGRVGRGP 589

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
            +S CILL     S+ S  RL +L+ ++DGF IA+ED+K R  GE  G +QSG   ++ A
Sbjct: 590 GVSYCILLADKQ-SQESRKRLKILELSKDGFEIAKEDMKLRGLGEFFGSQQSGKHTYITA 648

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLT 674
            P   +SLL  AR+ A  IL++DPDL+
Sbjct: 649 DPIAQESLLLKAREQALKILSEDPDLS 675


>gi|300172900|ref|YP_003772065.1| ATP-dependent DNA helicase RecG [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887278|emb|CBL91246.1| ATP-dependent DNA helicase RecG [Leuconostoc gasicomitatum LMG
           18811]
          Length = 676

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 184/445 (41%), Positives = 278/445 (62%), Gaps = 8/445 (1%)

Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
           ++E    Q+ L L++   +   G  IN + +  +    ++PF  T +Q   I +ILQD  
Sbjct: 208 FEEFFVFQMRLQLLKLADQNFAGEGINYDERAIRNFETSLPFKLTAAQTKVISEILQDQK 267

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT- 348
           +   M R+LQGDVGSGKT+VA +AM A V AG QA IMAP  ILAQQH   + +   N  
Sbjct: 268 RPRHMNRLLQGDVGSGKTVVAAMAMYAVVTAGMQAAIMAPTEILAQQHALSLTQLFDNAG 327

Query: 349 -QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + VE++T  +  A RR  LE + +G   I++GTHAL Q  + ++ L L ++DEQHRFG
Sbjct: 328 LSLRVELLTSGLKVAARRHLLEDLENGDIDILVGTHALLQPDVAFHHLGLAVIDEQHRFG 387

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           V QR  L +    P +L MTATPIPRTL +T+ G++D+S I + P GRK IKT  +  N+
Sbjct: 388 VNQRAALRENGVNPDILAMTATPIPRTLSITAYGEMDVSIIDQLPNGRKVIKTTRMGHNQ 447

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +D  I  +K  +  G +AY + P IEE +  + ++    + ++   F    + ++HGR+S
Sbjct: 448 LDNAIAFVKKQIDVGAQAYIVTPLIEESESLDVQNATAMYEAMQLEFPQYQVGLLHGRLS 507

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           + +K+++M  FK    ++L+ATTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGRG
Sbjct: 508 NDEKKTLMADFKANRIQILVATTVIEVGVDVPNATVMLILDADRFGLAQLHQLRGRVGRG 567

Query: 587 EEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
              S  IL+  P   K  Y   RL  +  T DGF++A+ DL+ R  G+ILG KQSG+P+F
Sbjct: 568 SRQSYTILVADP---KTDYGTARLDAMVETTDGFILAQRDLELRGSGDILGTKQSGVPEF 624

Query: 645 LIAQPELHDSLLEIARKDAKHILTQ 669
           ++  P    +++EIA+++A  +++Q
Sbjct: 625 VVGDPIKDLTMMEIAQQEAITLVSQ 649


>gi|300783675|ref|YP_003763966.1| ATP-dependent DNA helicase RecG [Amycolatopsis mediterranei U32]
 gi|299793189|gb|ADJ43564.1| ATP-dependent DNA helicase RecG [Amycolatopsis mediterranei U32]
          Length = 717

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 220/678 (32%), Positives = 362/678 (53%), Gaps = 53/678 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY--KILLNDGTGE 100
           DLL ++P  + +R     I+ +      T+   I + S  +++ R      +++ DG   
Sbjct: 31  DLLRHYPRRYAERGELTDIAGLELGEHATVLARIEKVSKRRMKARNGTIIDMVITDGKRR 90

Query: 101 ITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-----N 152
           +T  FF   +R+ +++      G+     GK+   ++ + + +P Y   ++++      N
Sbjct: 91  LTCAFFNQAWREKDLVP-----GKTGLFAGKVSAFRDTLQLTNPEYELFDAENEAEAMDN 145

Query: 153 F-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
           F   I  VY    G+      K + + L  L V  + +  +L +      +  A   IH 
Sbjct: 146 FLAAIIPVYPAAQGMPTWSIAKCVRQVLDVLEVDDDPMPAELRRLHKLSDLDNALRGIHR 205

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI----NVEGKIAQKILR 267
           P      E    +++RL +DE +A Q   L+  ++    I  P     +V G + +   +
Sbjct: 206 PENWAHLE---ASKKRLKWDEAMAVQ---LIFAQRRHSAISRPAKANPHVSGGLMEAFDK 259

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +PF  T  Q     +I  D++ ++ M R+LQG+VGSGKT+VAL AM   V+ G QA ++
Sbjct: 260 RLPFDLTAGQRGIGDEIAADLASEHPMNRLLQGEVGSGKTVVALRAMLQVVDNGRQAAML 319

Query: 328 APIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AP  +LA QH   +++                   V ++TG+M    R+KAL  I  G+A
Sbjct: 320 APTEVLAAQHARSLREMLGDLGQAGELGAAENATRVTLLTGSMGAKERKKALLEIVSGEA 379

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPR 433
            I++GTHAL QD +++  L L +VDEQHRFGV+QR  L  +    T+PHVL+MTATPIPR
Sbjct: 380 GIVVGTHALIQDHVEFADLGLAVVDEQHRFGVEQRDALRTRGAGDTSPHVLVMTATPIPR 439

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWIC 489
           T+ +T  GD+++S + E P GR PI T ++P+       + + +R++  + +G +AY +C
Sbjct: 440 TVAMTVYGDLEVSALREMPVGRSPIATTVVPVAEKPAWFERIWQRVREEVGKGHQAYVVC 499

Query: 490 PQIEEKKESNFR------SVVERFNSL-HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           P+I ++  S+        +V+E    L H       I ++HGRM    K++VM +F  G 
Sbjct: 500 PRIGDEPPSDKSDKRPPLAVLEVAPELAHGPLQGLKIDVLHGRMPPDGKDAVMRAFSAGE 559

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG     C+L+      
Sbjct: 560 LDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSVPGLCLLVTETLDG 619

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
             +  RL+ +++T DGF ++  DL+ R+EG+ILG  QSG    L     L D  ++  +R
Sbjct: 620 TATRERLAAVESTTDGFELSRLDLELRREGDILGAAQSGKRSTLKLLSLLRDEDVIAASR 679

Query: 661 KDAKHILTQDPDLTSVRG 678
             A+ ++TQDP+LT  RG
Sbjct: 680 ALAQELVTQDPELTKYRG 697


>gi|170017653|ref|YP_001728572.1| ATP-dependent DNA helicase RecG [Leuconostoc citreum KM20]
 gi|169804510|gb|ACA83128.1| ATP-dependent DNA helicase RecG [Leuconostoc citreum KM20]
          Length = 676

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 221/635 (34%), Positives = 347/635 (54%), Gaps = 27/635 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ---HSSFQLQKRRPYKILLNDGTG 99
           DL+ Y P  + D   R   SE  +   VT  G +S     + F  + +  + +L+     
Sbjct: 32  DLVTYFPFRYEDLGERVP-SETLDGDKVTFKGIVSTPAVMTRFGKKTQTRFGLLIAHENI 90

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
            +T   F+ +  + +N+   G +I V G     K  +  +    + + S D     ++ +
Sbjct: 91  RVT---FFNQPWITQNIIV-GEEIAVYGTYNAAKAAMTGIK---MINASVDG----LDPI 139

Query: 160 YSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           Y     ++    + +I  A S +   +P  + + + QK            +H P    D 
Sbjct: 140 YPATKQIAAKTIRHLIEIAWSEVRGTIPTLVPETIRQKYRLLDRNTQIENMHFP---VDM 196

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
                 R   A++E    Q+ L L++   +   G  I+ +        + +PF  T +Q+
Sbjct: 197 AAAKAGRRSAAFEEFFIFQMRLQLLKLADQNFAGESIDYDETALVNFEQALPFELTAAQQ 256

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             I++ILQD  +   M R+LQGDVGSGKT+VA + M AAV AG QA IMAP  ILAQQH 
Sbjct: 257 KVIQEILQDQKRPRHMNRLLQGDVGSGKTVVAAMTMYAAVTAGCQAAIMAPTEILAQQHA 316

Query: 339 EFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
             + +   N    + VE++T  +  A RR  LE + +G   I++GTHAL Q  + ++ L 
Sbjct: 317 MNLAQLFDNAGVNVRVELLTSGLKVAARRHLLEDLENGTIDILVGTHALLQPDVAFHHLG 376

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L ++DEQHRFGV QR KL +    P +L MTATPIPRTL +T+ G++DIS I + P+GRK
Sbjct: 377 LAVIDEQHRFGVNQRAKLRENGVNPDILAMTATPIPRTLSITAYGEMDISVIDQLPSGRK 436

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I+T  +  N++D  ++ +K  +  G +AY + P IEE +  + ++    + ++      
Sbjct: 437 TIQTKRLRHNQLDTALDFVKQQIDLGAQAYIVTPLIEESESLDVQNATAMYEAMQLELPQ 496

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             I ++HGR+S+ +K+ +M+ FK    ++L+ATTVIEVG+DV +AS+++I +A+ FGLAQ
Sbjct: 497 YQIGLLHGRLSNDEKKQLMEDFKANRIQILVATTVIEVGVDVPNASVMLILDADRFGLAQ 556

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           LHQLRGRVGRG+  S  IL+  P   K  Y   RL  +  T DGF++A+ DL  R  G+I
Sbjct: 557 LHQLRGRVGRGKRQSYTILVADP---KTDYGTARLDAMVETTDGFVLAQRDLDLRGAGDI 613

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           LG KQSG+P+F +  P     +LEIA+++A  I++
Sbjct: 614 LGTKQSGVPEFNVGDPVKDLRMLEIAQQEAIAIVS 648


>gi|260904759|ref|ZP_05913081.1| ATP-dependent DNA helicase RecG [Brevibacterium linens BL2]
          Length = 715

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 228/705 (32%), Positives = 364/705 (51%), Gaps = 57/705 (8%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY--KILLND 96
           T   DL  + P  F+    +  +  +       +   +    + ++QKRR     ++++D
Sbjct: 23  TSVADLFRFFPRRFLVPGEKTPLGGLPLGETAILQAEVISVDTRRMQKRRGTITDVIVHD 82

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-------Q 149
           G   + + FF ++   L +    G  +   GK+++ + ++ +  P ++  +        +
Sbjct: 83  GQQSMKIAFFNQR--WLDSQLVPGLTVVFAGKVEEYRGQLTLNSPTWLNRDEHDEKWTPE 140

Query: 150 DVNFPLIEAVYSLPTGLS-VDLFKKIIVEALSRLP-----VLPEWIEKDLLQKKSFPSIA 203
           D+N P    VYS   G++   L+K I V      P      LP  + ++L      P + 
Sbjct: 141 DLNSPF--PVYSRVKGIAQTRLWKAIKVLLDVAGPDEFEDPLPTAMRENL----DLPDLR 194

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263
            A N +H PR A     T  A++R  ++E LA Q   +  +  ++K    P+   G  ++
Sbjct: 195 TALNDMHRPRSAAA---TEKAKQRWKWEEALALQAEFVSRKADYEKLEATPLLNVGARSE 251

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +   ++PF  T SQ    ++I  DM +K  M R+L GDVGSGKT+VAL AM  AV++G Q
Sbjct: 252 RFDNSLPFYLTASQLRVGEEIEADMGRKTAMHRLLHGDVGSGKTVVALRAMLTAVDSGAQ 311

Query: 324 AVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIA 372
           A ++AP  +LA QH+  I+             + + Q+ V ++TG+MP   R++    +A
Sbjct: 312 AAMLAPTEVLATQHFRSIETLLGDQMALSPLLSSDDQVRVALLTGSMPARERKQLALDLA 371

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--TAPHVLLMTATP 430
            GQ  I++GTHAL  D+  +  L L++VDEQHRFGV+QR  L  KA    PH L+M+ATP
Sbjct: 372 TGQIDIVVGTHALMSDTTMFDTLGLIVVDEQHRFGVEQREALRAKAGLKVPHTLVMSATP 431

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAY 486
           IPRT+ +T   D+D+S + E PAG K I T  + +    N +  V++ +      G+  +
Sbjct: 432 IPRTVAMTVFADLDVSTLDEMPAGTKDITTHAVSLGDHPNWLGRVLQLIDEAAENGRGTF 491

Query: 487 WICPQIE----EKKESN----FRSVVERFNSL----HEHFTSSIAIIHGRMSDIDKESVM 534
            + P+IE    E  E+      R  +E          E  + S A++HGRMS  +K+  M
Sbjct: 492 VVFPRIEPSDIEDPETGDVIGARKGIEDLKDFLQNSDELRSRSTALLHGRMSPAEKDRTM 551

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F +G   +L++TTV+EVG+DV  A++++I  AE FG+AQLHQLRGRVGR    + C L
Sbjct: 552 AAFVSGETDILVSTTVVEVGVDVPRATMMVIFEAERFGVAQLHQLRGRVGRDGSAAMCFL 611

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           L   P    S+ RLS +  T DGF +AE DL  R EG++LG  Q G              
Sbjct: 612 LTDMPEVDESFERLSEVAGTLDGFALAEYDLGTRGEGDVLGSSQWGGSSLKHLSILRDAP 671

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           ++E AR  A+ I++ DPDL+++   ++R  +      E+  FI A
Sbjct: 672 IVEEARTIAEKIISVDPDLSAL--PALRAFISRVLPAESAHFIEA 714


>gi|315925837|ref|ZP_07922044.1| DNA helicase RecG [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315620946|gb|EFV00920.1| DNA helicase RecG [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 679

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 207/611 (33%), Positives = 329/611 (53%), Gaps = 26/611 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR----PYKILLNDG- 97
           DLL + P  +IDR  R   +  SE   VTI   +S+  + +  +R        +  +DG 
Sbjct: 31  DLLAHFPKQYIDRSRRGTFAAPSET-AVTIEACVSRKGTVRRIRRNLSLFGLSVTTDDGV 89

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
           TG+IT  FF +    L   F E  +    G+I + K +  M +P ++    +  NF  + 
Sbjct: 90  TGQIT--FFNQP--WLAEHFHEEARYYFFGRITEKKGKCGMANPQFV-PTDKPGNFFELT 144

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            VY+   G+S +  +K+I + L+    + + + + L + +  P+ A    ++H P+   +
Sbjct: 145 PVYAPVGGVSGETLRKLIAKVLAEDIAMSDPLPETLRKDRCLPNSAACLKLLHCPQTMAE 204

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKE---IGIPINVEGKIAQKILRNIPFSPT 274
               +  R RL ++E L   + LL  R + ++    +  P ++      +  R +PF  T
Sbjct: 205 ---VAAGRTRLKFEEALKLNLGLLRSRGETRRSSVVLAHPASL-----SRFERGLPFLLT 256

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + Q   + +I  D+     M R++QGDVGSGKT+VA+         G Q   MAP  ILA
Sbjct: 257 EGQRRVLAEIAADLQSGRIMNRLVQGDVGSGKTVVAVACAYLMALGGYQCAYMAPTEILA 316

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH    + Y     I V ++TG+M  + R  AL  IA+G A +IIGTHALFQ  + YY 
Sbjct: 317 EQHARNFEAYLAPYGISVTLVTGSMKASERENALTHIANGDAQVIIGTHALFQKDMAYYN 376

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L +VI DEQHRFGV+QR  L  K   PH L+M+ATPIPRTL L   GD+DIS I   PAG
Sbjct: 377 LGMVITDEQHRFGVRQRGLLALKGERPHTLVMSATPIPRTLALVLYGDLDISVIDTMPAG 436

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEH 513
           RK +KT       + +++  + V ++ G + + +CP +E  +E +  R        +  +
Sbjct: 437 RKKVKTYFYTEKALRKILGMMAVEMAAGHQGFIVCPFVENAEEMAEVRDTQTVCREVDRY 496

Query: 514 FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +     +A +HG+M   +K +V+  F  G    L+AT++IEVGIDV + +++++ +A+ F
Sbjct: 497 YKGLYRVACLHGKMKPDEKAAVVVDFSAGKIDCLVATSIIEVGIDVPNVTMMVVMSADRF 556

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+QLHQLRGRVGRG+  + C L+ +  +++ +  R+ V+ N  +G  IAE D K R  G
Sbjct: 557 GLSQLHQLRGRVGRGDAQAYCFLVSN-AVNEKTIARMKVIVNHHNGQEIAEADFKLRGPG 615

Query: 632 EILGIKQSGMP 642
           +  G +Q G+P
Sbjct: 616 DAFGTRQHGLP 626


>gi|241889944|ref|ZP_04777242.1| ATP-dependent DNA helicase RecG [Gemella haemolysans ATCC 10379]
 gi|241863566|gb|EER67950.1| ATP-dependent DNA helicase RecG [Gemella haemolysans ATCC 10379]
          Length = 669

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 222/669 (33%), Positives = 362/669 (54%), Gaps = 28/669 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +N L   + T +GVGKKY   L+++       E   I  + Y+    +        S   
Sbjct: 2   INILEKSVGTIKGVGKKYLQTLNEL-------EIYTIRDILYNIPYRVSSSTDFSSSVKD 54

Query: 66  EERIVTITGYISQHSSFQLQKRRPYK--ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            E+++T TG +    S Q    R  +    L+  +G I ++FF +    LK    EG+ +
Sbjct: 55  NEKVIT-TGKVETRVSTQFYGNRRSRSFFTLSTSSGSIKIVFFNQ--HYLKKNLIEGKDV 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V G      N I      +   + +      IE  Y L  G++   F K++ E+ + + 
Sbjct: 112 VVKGTYNAANNTITASSVSFNVVDEKPKG-DTIEVFYHLKQGITQKKFTKLVEESFNMID 170

Query: 184 VLPEWIEKDLLQK--KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              E +  DL+ +  K    + +    +H P+ +++F+    A++  A+ EL   Q+ L 
Sbjct: 171 --GENVILDLVPENFKGIWKLDKILYTLHYPKNSEEFD---KAKKMFAFHELFNYQLKLQ 225

Query: 242 LMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L     + E     + +  K   +   ++PF  T +Q   I +I+ D++   +M R+LQG
Sbjct: 226 LQNINSRIENNRYCVGINNKDINEFKNSLPFMLTGAQSRVIDEIVDDLNNPYKMDRLLQG 285

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT VA   + A ++AG Q  IMAP  ILA QH+E   ++ ++  I V ++T + P
Sbjct: 286 DVGSGKTAVAAATLYATIKAGYQTAIMAPTEILANQHFETFFEFFKDLNISVALLTSSTP 345

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           +  R   L  +  G+  ++IGTH+L Q+ +++  L  VI DEQHRFGV+QR  L+ K  A
Sbjct: 346 KKDRNTILSLLEVGEIELLIGTHSLIQEDVKFNNLKYVITDEQHRFGVKQRQLLSNKGEA 405

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            + L+MTATPIPR+L +T + DI +S I E PAGRK ++T         +V++ +++ L 
Sbjct: 406 VNSLMMTATPIPRSLAITLITDIKVSTIDELPAGRKKVQTYKATNKSFYKVLDNIRMELD 465

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFK 538
            G++ Y +CP IEE ++ + ++V E + ++  +      IAI+HG+M++ +K+++++ F 
Sbjct: 466 NGRQGYVVCPLIEESEKMDLQNVEETYENIKNYLPDDYKIAILHGKMNNKEKDAIVEKFL 525

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +LI+TTVIEVG++V +A+ +II +A  FGLA LHQLRGRVGR +  S CIL    
Sbjct: 526 NKEIHILISTTVIEVGVNVPNATFMIIVDAHRFGLATLHQLRGRVGRSKFQSYCIL---- 581

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            ++ +   R+ ++    DGF IAE DLKQR  G+  G KQSG+P F +A       L+ +
Sbjct: 582 -VTDSKSERIDIMCLENDGFKIAEFDLKQRGPGDFFGTKQSGVPSFKVADLINDVDLMYL 640

Query: 659 ARKDAKHIL 667
           A+K A  I+
Sbjct: 641 AKKLAVKII 649


>gi|126654454|ref|ZP_01726189.1| ATP-dependent DNA helicase RecG [Bacillus sp. B14905]
 gi|126589088|gb|EAZ83297.1| ATP-dependent DNA helicase RecG [Bacillus sp. B14905]
          Length = 405

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 180/380 (47%), Positives = 252/380 (66%), Gaps = 5/380 (1%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA I + AAV AG Q  +MAP  ILA+QH E + ++ Q   + V 
Sbjct: 1   MNRLLQGDVGSGKTVVAAIGLYAAVSAGYQGALMAPTEILAEQHLENLLEWFQPFGVRVA 60

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +++G+     RR  L  +A+G+  I+IGTHAL Q  + +  L  VI DEQHRFGV+QR  
Sbjct: 61  LLSGSTKTKERRVILADLANGELDIVIGTHALIQPDVIFKNLGFVITDEQHRFGVEQRRI 120

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K   P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T  +   +   VI 
Sbjct: 121 LRDKGENPDVLFMTATPIPRTLAITAFGEMDVSMIDEMPAGRKQIETHWMKKEQFGSVIS 180

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKE 531
           +L+  L+ G++AY ICP IEE  + + ++ VE +  L  +FT    + ++HGR+S  +K+
Sbjct: 181 KLEGELAAGRQAYAICPLIEESDKLDVQNAVEIYEQLATYFTGRYQVGLMHGRLSADEKD 240

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           +VM +F +G+ ++L++TTV+EVG++V +A+ +I+ +AE FGLAQLHQLRGRVGRGE  S 
Sbjct: 241 AVMRAFSDGSIQVLVSTTVVEVGVNVPNATFMIVYDAERFGLAQLHQLRGRVGRGEHQSY 300

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           CILL  P  S     R+  +  T DGF +AE+DL+ R  G+  G KQSG+P F +A   +
Sbjct: 301 CILLADPK-SDEGKERMQSMTETNDGFRLAEKDLELRGPGDFFGRKQSGLPDFKVADL-V 358

Query: 652 HD-SLLEIARKDAKHILTQD 670
           HD  +LE ARKDA  +L  D
Sbjct: 359 HDYRILETARKDATTMLETD 378


>gi|302558168|ref|ZP_07310510.1| ATP-dependent DNA helicase RecG [Streptomyces griseoflavus Tu4000]
 gi|302475786|gb|EFL38879.1| ATP-dependent DNA helicase RecG [Streptomyces griseoflavus Tu4000]
          Length = 740

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 227/722 (31%), Positives = 364/722 (50%), Gaps = 84/722 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ---HSSFQLQKRRP----YKILLN 95
           DLL ++P  + +R     ++++  +  VT+   ++    H+    +  R      ++ + 
Sbjct: 39  DLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASAKAPRGKGQRLEVTIT 98

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVN-- 152
           DG+G + L+FF             G +    GK+     R+ + HP Y +  +  +    
Sbjct: 99  DGSGRLQLVFFGAGVHKPHKELLPGTRAMFAGKVSVFNRRVQLAHPAYELLRDDAEETVE 158

Query: 153 ---------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                    +P    + S   G ++        EA+  LP         L   +    + 
Sbjct: 159 TWAGALIPIYPATAKLESWKIGKALQTVLPSAQEAVDPLP-------DSLRAGRGLVGLP 211

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR---------KQFKKEIGIP 254
           EA   IH P    D E    AR RL +DE    Q+AL   R          +  K  G+ 
Sbjct: 212 EALLKIHRPHTKADVE---DARARLKWDEAFVLQVALARRRHADAQLPAVARRPKPDGLL 268

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              +G++        PF+ T+ Q     +I  D++ ++ M R+LQG+VGSGKT+VAL AM
Sbjct: 269 TAFDGRL--------PFTLTEGQRKVSAEIFTDLATEHPMHRLLQGEVGSGKTMVALRAM 320

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYT-----------QNTQIIVEIITGNMPQAH 363
            A V+AGGQA ++AP  +LAQQH+  + +               T   V ++TG+M  A 
Sbjct: 321 LAVVDAGGQAAMLAPTEVLAQQHHRSVTEMMGELAEGGMLGGAETATKVVLLTGSMGAAA 380

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APH 422
           RR AL  +A G+A ++IGTHAL +D ++++ L LV+VDEQHRFGV+QR  L  K    PH
Sbjct: 381 RRHALLDLATGEAGLVIGTHALIEDKVKFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPH 440

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVV 478
           +L+MTATPIPRT+ +T  GD++ S + + PAGR PI + ++P       +    ER++  
Sbjct: 441 LLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKPHFLARAWERVREE 500

Query: 479 LSEGKKAYWICPQIEEKKESNFRSV--------VERFNSLH-----EHFTSS------IA 519
           +  G +AY +CP+I ++++   ++          ER   L      E   +       + 
Sbjct: 501 VEGGHQAYVVCPRIGDEEDDPKKAGRKKSPEDEAERRPPLAVLDIAEQLAAGPLRGLRVE 560

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           ++HGRM   DK++VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQL
Sbjct: 561 VLHGRMQPDDKDAVMRRFAAGEADVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQL 620

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           RGRVGRG     C+L+   P +  +  RL+ + +T DGF ++  DL+QR+EG++LG  QS
Sbjct: 621 RGRVGRGSAPGLCLLVTEMPEASPARQRLTAVASTLDGFELSRIDLEQRREGDVLGQAQS 680

Query: 640 GMPKFLIAQPELHDSLLEIARKDAKH-ILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
           G    L     + D  +    ++    I+  DP+LT + G  +R  L      E  Q++ 
Sbjct: 681 GTRSSLRMLAVIDDEEIIAEAREEAAGIVAADPELTGLPG--LRTALEALLDEEREQYLE 738

Query: 699 AG 700
            G
Sbjct: 739 KG 740


>gi|260495036|ref|ZP_05815165.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_33]
 gi|260197479|gb|EEW94997.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_33]
          Length = 689

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 224/611 (36%), Positives = 346/611 (56%), Gaps = 24/611 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEI 101
           DL++Y P ++ DR    KI E+     V +   +    +  ++  ++  K ++ DGTG +
Sbjct: 38  DLIYYFPRAYDDRTNIKKIGELKFNEYVVLKATVMSAVNLTVRSGKKIVKAMVTDGTGIM 97

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVY 160
            +L+F      +K     G +    G+ KK      +++P Y +F   Q V+   I  +Y
Sbjct: 98  EILWF--GMPYIKKSLKIGEEYLFIGQTKK-STVFQLINPEYKLFSGQQKVSENEILPIY 154

Query: 161 SLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           S    ++ +  +K++ + L   L    E I  +L+++        A   IH P   K+ E
Sbjct: 155 SSNKNITQNSLRKLVEKFLVNFLNYFEENIPDELIKEYKIMERKSAIKNIHYPVSMKEIE 214

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN----VEGKIAQKILRNIPFSPTK 275
               A+ R A        + L +++ +F  E     N     + +  +K L  +PF+ T 
Sbjct: 215 ---EAKRRFA--IEELLILELGILKNRFIIENSNSKNYEVEGKKEKVKKFLSFLPFTLTN 269

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q+  IK+I  ++S    + R++QGDVGSGKT+VA++ +    E G Q  +MAP  ILA 
Sbjct: 270 AQKKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGYQGALMAPTEILAN 329

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY  IK+  +   + VE++T ++    + + LE IA+G   I+IGTH+L +D + + KL
Sbjct: 330 QHYLGIKERLEKIGLRVELLTSSIKGKKKNEILEGIANGDVDIVIGTHSLIEDDVIFKKL 389

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L+++DEQHRFGV QR KL +K    ++L+M+ATPIPR+L L+  GD+D+S I E P GR
Sbjct: 390 GLIVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGDLDLSIIDELPPGR 449

Query: 456 KPIKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            PIKT  I     DE +E++   +    + G +AY++ P IE   +   +SV +    + 
Sbjct: 450 TPIKTKWIA---NDEDLEKMYDFIYKKVNAGNQAYFVAPLIETSDKMALKSVDKVSEEIE 506

Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             F++  I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  ++I+ I NAE 
Sbjct: 507 RKFSNKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAER 566

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FGL+ LHQLRGRVGRG + S C L+ +  +++NS  RLS+++ TEDGF IAEEDLK R  
Sbjct: 567 FGLSALHQLRGRVGRGSKQSYCFLISN-SITENSKQRLSIMEETEDGFRIAEEDLKLRNS 625

Query: 631 GEILGIKQSGM 641
           GEI G++QSG 
Sbjct: 626 GEIFGLRQSGF 636


>gi|239623788|ref|ZP_04666819.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521819|gb|EEQ61685.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 685

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 222/669 (33%), Positives = 367/669 (54%), Gaps = 21/669 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERIV 70
           P+ + +G+G+K      K+            DLL Y+P ++ D +  P  I ++ ++ ++
Sbjct: 6   PVHSLKGIGEKTGKLFEKL------GVFSIDDLLSYYPRAY-DTYEAPVSIGQLKDQTVM 58

Query: 71  TITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            +   + + ++  +L   +   + L D TG + + ++      ++     G      G++
Sbjct: 59  AVESVLLKGANLVRLNHIQIVSVQLKDITGSLQVSWY--NMPYMRANLKSGETYVFRGRV 116

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            + + R++M  P      + +     ++ VY    GLS     K   +AL    +  E++
Sbjct: 117 VRKRGRLVMEQPEVFTPEAYEAVAHSMQPVYGQTRGLSNKTIVKAQQQALEVRRLEREYM 176

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              L +K     I  A   IH P    +  +   AR+RL +DE     + +  M K+ ++
Sbjct: 177 PAGLRRKYELAEINYAIEHIHFPADRTELLF---ARKRLVFDEFFMFLVGVRRM-KEHRE 232

Query: 250 EIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +   P  V+     K L++ +P++ T +QE A++++ +DM     M R++QGDVGSGKT+
Sbjct: 233 DKHSPYVVKRVQEAKALKSSLPYALTGAQERALEEVYRDMEGGLVMNRLIQGDVGSGKTI 292

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRK 366
           +A++A+  A   G Q  +M P  +LA+QHYE +    +   I  +  ++TG+M    +R 
Sbjct: 293 IAILALVQAAYNGYQGALMVPTEVLARQHYESMISLFEAHGITKVPVLVTGSMTAKEKRL 352

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
           A  +IA  +A IIIGTHAL Q+ + Y  L LVI DEQHRFGV QR  L+ K   PHVL+M
Sbjct: 353 AYGKIAGHEADIIIGTHALIQEKVVYDNLALVITDEQHRFGVGQRELLSTKGQEPHVLVM 412

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL +   GD+DIS I E P GR+ I+  ++      +    ++  +  G +AY
Sbjct: 413 SATPIPRTLAIIIYGDLDISVIDELPQGRQAIRNCVVDPGYRPKAYSFIQKQVEMGHQAY 472

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKL 544
            ICP +E  +     +V++   SL     S IA+  +HG+M   +K ++M+ F  G  ++
Sbjct: 473 IICPMVEASEMIEAENVLDYTKSLRTELPSQIAVEYLHGKMKAKEKNAIMERFAAGGIQV 532

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CI++ +    K++
Sbjct: 533 LVSTTVIEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGKAQSYCIMV-NCSHDKDT 591

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL +L  + DGF IA EDLK R  G+I G++QSG  +F +A      ++L+   ++  
Sbjct: 592 GERLDILNRSNDGFYIASEDLKLRGPGDIFGLRQSGDMEFKLADIFTDANILKRVSEEVD 651

Query: 665 HILTQDPDL 673
            +L +DP L
Sbjct: 652 LLLDKDPQL 660


>gi|169335590|ref|ZP_02862783.1| hypothetical protein ANASTE_02005 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258328|gb|EDS72294.1| hypothetical protein ANASTE_02005 [Anaerofustis stercorihominis DSM
           17244]
          Length = 675

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 209/560 (37%), Positives = 311/560 (55%), Gaps = 30/560 (5%)

Query: 127 GKIKKLKNRIIMVHPHYI-------FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           GK+++  N + +V P Y          N  +  +PL     S    L+   FKK I+ AL
Sbjct: 113 GKVERNGNYLEIVSPKYSKLEDNVSIKNGLNPIYPL-----SAKNKLTNKDFKKFILSAL 167

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +++ ++ ++I  D+ ++    S+ EA+  IH P+  +D   T  A ER+ +DE     ++
Sbjct: 168 TKIDII-DYIPYDIKKEYGLISLDEAYKNIHEPKTLED---TLKANERMTFDEFCGFNLS 223

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           ++L +     + G    V  K   K +  +PF  T SQ   I +I +D+    +M R++Q
Sbjct: 224 IILNKNLNLGKKGEIFEVINK--DKFMNLLPFKLTPSQNKVISEIEEDLMSGVKMNRLVQ 281

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL ++  A+  G QA   AP  ILA QH+E IK+      + VE++   M
Sbjct: 282 GDVGSGKTIVALYSIYLAITNGYQAAFCAPTKILAMQHFESIKEIFDKLDVNVELLHSKM 341

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +R+A ERI  G++ II+GTHA+F   ++Y  L L ++DEQHRFGV QR  L +K  
Sbjct: 342 TAKEKREAYERIESGESKIIVGTHAVFSTKVKYNNLGLAVIDEQHRFGVAQRGFLDKKGE 401

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           + H L+M+ATPIPRTL L+   D+D+S I +KP  RK IKT     +  D +       +
Sbjct: 402 SVHTLVMSATPIPRTLTLSIYKDLDVSIIDKKPGNRKEIKTYFKDYSYYDRIYRFALKEI 461

Query: 480 SEGKKAYWICPQI-----EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           ++  + Y +CP I     E  +++  +     F +++       A+IHG+M + +KE +M
Sbjct: 462 AKKNQVYVVCPSIDSDDLEAAEKTYKKLKKTYFKNVNA------ALIHGKMDEEEKEKIM 515

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F  G    LIAT+VIEVGID  DA++IIIE A+ FGLA LHQLRGRVGR ++ S CIL
Sbjct: 516 EDFYKGEISALIATSVIEVGIDSKDATLIIIEGADRFGLASLHQLRGRVGRNDKDSYCIL 575

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           L   P SK S  RL+ L    DGF IA  DLK R  G+ILG +QSG   + I +   +  
Sbjct: 576 LSENP-SKKSIERLNFLSKNNDGFEIALFDLKTRGSGDILGYRQSGKGGYNIYKLIENSE 634

Query: 655 LLEIARKDAKHILTQDPDLT 674
           L   ++     IL  D ++ 
Sbjct: 635 LFNKSKMAMDKILNDDNEVN 654


>gi|229815441|ref|ZP_04445773.1| hypothetical protein COLINT_02489 [Collinsella intestinalis DSM
           13280]
 gi|229808974|gb|EEP44744.1| hypothetical protein COLINT_02489 [Collinsella intestinalis DSM
           13280]
          Length = 727

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 226/694 (32%), Positives = 360/694 (51%), Gaps = 44/694 (6%)

Query: 40  RFIDLLFYHPSSFID--RHYRPKISEISEERIVTITGYISQHSSFQLQKRRP----YKIL 93
           R  DLL + P  ++D  R Y  + + + E  + TI G + + S+    K  P     ++ 
Sbjct: 45  RVGDLLSHIPFRYLDFTRAYTIESAPLGE--VCTIVGTVDKVSNRPTSK--PGMTLTEVF 100

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           L D +G + + FF  K   L   F  G ++ + GK++       M  PH+   +      
Sbjct: 101 LVDESGVLKVAFF--KQPWLAREFARGDRLALIGKMEFAYGFKQMASPHFEKLDGGGARA 158

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
             I+ V+ +  G+S    ++I   AL ++ V  + +   L  ++   S++ A   IH PR
Sbjct: 159 G-IQPVHRVTDGISQAWMRRIASVALEQVGVFCDPVPAPLRARRQLMSLSRALRTIHFPR 217

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
              + +    AR RLAYDEL+  Q+AL L       ++    +  G   + +   +PF+ 
Sbjct: 218 LMNEVQL---ARRRLAYDELMYLQLALRLRNDGDLLDVAPLAHRVGARVRAMREALPFAL 274

Query: 274 TKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
           +  QE+A+ DIL DM     ++ R+L GDVG+GKT VA +A+A A ++G QA +MAP G+
Sbjct: 275 SDEQEAAVSDILGDMCDAGHVMNRLLLGDVGTGKTAVACVALACAADSGNQACVMAPTGV 334

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+Q+            I   ++TG+   + R   LER+A G   ++ GTHA+  D +++
Sbjct: 335 LARQYAVKSGPLLDAAGISWALLTGSTAASERSSILERVASGALDVVFGTHAVLNDDLRF 394

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            +L LV++DEQHRFGV QR  L  K     +L+MTATPIPRTL L+  GD+D S I  +P
Sbjct: 395 RRLSLVVIDEQHRFGVGQRNVLRGKGPGADLLVMTATPIPRTLALSVYGDLDTSIIRHRP 454

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN---- 508
                + TV +     D     ++  L++G++AY ICP +  +        V   +    
Sbjct: 455 VPGAGVSTVALESGSRDIAYGAVRDALAQGRQAYIICPMVSPQDAPEQLDDVPGLDIGES 514

Query: 509 -------SLHEHFTSS-----------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  +LH+  T +           + ++HG+M+   K+ V+D F  G   +L++TTV
Sbjct: 515 GRARQAVTLHDVETEASDIRRLIPGARVEVMHGKMAPKAKDDVIDRFGKGEIDILVSTTV 574

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS----YT 606
           +EVG+DV +A++++IEN E FGLA LHQLRGRVGRG    +C +L      + S    + 
Sbjct: 575 VEVGVDVPNATVMLIENGERFGLATLHQLRGRVGRGSNPGTCYVLTEVRPKRGSKSPAWE 634

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL  L  T+DGF +AE DL+ R EGEILG++Q G         +    L+E A +DA+ +
Sbjct: 635 RLQALAKTDDGFELAEMDLRLRHEGEILGLRQHGGVALCFVDLDADTDLIEAAHEDAEEL 694

Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           L    DLT+     +R  + + +Y + F+ +  G
Sbjct: 695 LRYSRDLTACATMPMRHEV-IARYGDVFKEVSGG 727


>gi|256397125|ref|YP_003118689.1| ATP-dependent DNA helicase RecG [Catenulispora acidiphila DSM
           44928]
 gi|256363351|gb|ACU76848.1| ATP-dependent DNA helicase RecG [Catenulispora acidiphila DSM
           44928]
          Length = 746

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 231/717 (32%), Positives = 369/717 (51%), Gaps = 80/717 (11%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
           +K+++ G   +T   DLL ++P  ++ R    ++SE+      TI   +++ S   +  R
Sbjct: 18  AKVLHTGLGLDT-VGDLLRHYPRKYVKRGELTELSELEPGTEATIVAQVTKVSRRSMAAR 76

Query: 88  RPYKILLN-----DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142
           R   + +      D   EIT  FF  +     N    G      GK+ +   +I + +P 
Sbjct: 77  RGQMMTVEVRDAADTAVEIT--FFNPRA---ANALKPGMLGMFAGKVGEYHGKIQLTNPE 131

Query: 143 Y--IFHNSQDVN-----------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
           +  +  +++D              PL  +   LP+       + +I +  + +   P  +
Sbjct: 132 FAKLDADTEDAGDSPIDNWAGELMPLYPSTGGLPSWKIARCVRMVIDQLDADIEDDP--M 189

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            + +  ++   ++ EAF  IH P    D+   + AR+RL +DE L  Q+ L   R+  K 
Sbjct: 190 PRPVRARQGLLTLTEAFRRIHRP---DDWPEIAVARKRLKWDEALPMQVVLAQRREALKA 246

Query: 250 EIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
              +P   V G +       +PF+ T  Q    ++I  D++ ++ M R+LQGDVGSGKT+
Sbjct: 247 LPAVPRRRVPGGLLDAFDAALPFTLTAGQRQVGEEIEADLASEHPMHRLLQGDVGSGKTM 306

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY------------------------ 344
           VAL AM A V+AGGQAV++AP  +LAQQH+  I +                         
Sbjct: 307 VALRAMLAVVDAGGQAVMLAPTEVLAQQHHRSIVQMLGAGADVPMDLFSETAAPDAAPFD 366

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
               ++ V ++TG+     RR  L   A G A I+IGTHA+ QD +Q+  L LV+VDEQH
Sbjct: 367 PNRKRVRVALLTGSQNAKDRRTNLLDAASGTAGIVIGTHAVIQDHVQFADLGLVVVDEQH 426

Query: 405 RFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           RFGV+QR  L  K    PHVL+MTATPIPRT+ +T  GD++ S ++E PAGR PI T ++
Sbjct: 427 RFGVEQRDALRAKGEDPPHVLVMTATPIPRTVAMTVFGDLETSVLSELPAGRSPIATHVV 486

Query: 464 PI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS----------------- 502
                 +    V ER++  +  G++AY +CP+I E+  S   S                 
Sbjct: 487 AAHEHPSHFTRVWERIREEVGAGRQAYVVCPRIGEESGSGEVSDDGSELVSEPGQQRPPL 546

Query: 503 -VVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            VV+    L E       + ++HGRM+  DK++VM ++      +L+ATTVIEVG++V +
Sbjct: 547 AVVDVAAKLAEGPLKGLRVGMLHGRMAPDDKDAVMRAYAGHELDVLVATTVIEVGVNVPN 606

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           +++I++ +A+ FG++QLHQLRGRVGRG+    C+L+   P    +  RL+ + +T DGF 
Sbjct: 607 STVIVVMDADRFGVSQLHQLRGRVGRGKWPGLCLLVTESPDGAPARERLAAVASTLDGFE 666

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTS 675
           +++ DL  RKEG++LG  QSG    L     + D  ++  AR +A  ++  DP L +
Sbjct: 667 LSKIDLAIRKEGDVLGATQSGYRSSLRMLSVIDDEDIIRAARDEATPLVEADPALNA 723


>gi|169824372|ref|YP_001691983.1| ATP-dependent helicase [Finegoldia magna ATCC 29328]
 gi|167831177|dbj|BAG08093.1| ATP-dependent helicase [Finegoldia magna ATCC 29328]
          Length = 678

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 230/669 (34%), Positives = 360/669 (53%), Gaps = 32/669 (4%)

Query: 13  LSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI-SEERI 69
           LS  +G+GKK    L+   IIN          DLL Y P  + +R     I +   EE  
Sbjct: 3   LSEIKGIGKKKLEVLNSMGIININ--------DLLNYFPYRYENRSIIKNIIDTRDEENC 54

Query: 70  VTITGYISQHSSFQLQKRRPYKILLN-DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           V    +IS+  +  L++       +  D T +I++ +F      ++N         + GK
Sbjct: 55  VIKVKFISKPITKYLRRNLNLTTAIAFDDTSKISVSWF--NQPFIRNQILPNTTYYLYGK 112

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-----P 183
           I++++N+  +  P  I   +      +I  +Y +  G++ +   K +  A+         
Sbjct: 113 IQRVQNQFKISSP--ILSKTFGGKLGIIYPIYKVKKGITNNDMIKFVDFAIKHCIDEIKN 170

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           V+P  + K+         I    N I N  K  D+     AR  L  +E++  Q+A+  M
Sbjct: 171 VIPYSMIKNY-------DIENKRNAIKNIHKPVDYMQFKRARTALVLEEVIIMQLAMKSM 223

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +    ++  I +  +  I    + ++ F  TK Q  AIKDI  DM+ + RM R++QGDVG
Sbjct: 224 KTSLNQQNYIKLQSDESI-NIFINSLKFELTKGQLEAIKDIEMDMTSEKRMNRLVQGDVG 282

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA  A+  +  +G Q+  MAP  ILA QHYE + +      I V ++  ++ ++ 
Sbjct: 283 SGKTIVAEAAIFKSHSSGYQSAFMAPTDILATQHYESLSEDFSKFGIKVCLLKSDLTKSE 342

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +   L+ I  G   +I+GTHA+ QD +++ +L LVI DEQHRFGV QR K++ K   P V
Sbjct: 343 KDLVLKGIKSGYFDVIVGTHAIIQDFVEFKRLGLVITDEQHRFGVGQRKKISDKGQNPDV 402

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL L+  GD+DIS I E P GRK I+T  +  +    + + ++  +  G 
Sbjct: 403 LVMTATPIPRTLALSYYGDLDISTINEMPKGRKIIETYSVGFSYEKRIADFIRKQVDNGF 462

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY +CP IEE +     +V E +N L  E+F+  ++ ++HG+M   +KE  M  F +G 
Sbjct: 463 QAYIVCPLIEESESLELENVTELYNRLTGEYFSDINVGMLHGKMKSSEKEETMKDFVDGK 522

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            K+L++TTVIEVG++V  A++I+I NAE FGL+QLHQLRGRVGR  + S CIL+ +   S
Sbjct: 523 TKILVSTTVIEVGVNVRKANVIVIYNAERFGLSQLHQLRGRVGRSSDQSYCILI-NKAHS 581

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                R++++  T  GF ++++DL  R  G++LG +QSG+P   IA  E    L+E A  
Sbjct: 582 DEQMERMNIMVKTNSGFELSQKDLMMRGSGDLLGTRQSGIPLLNIADLEKDYDLIEKAAV 641

Query: 662 DAKHILTQD 670
              +I T D
Sbjct: 642 ITDYIYTND 650


>gi|167740105|ref|ZP_02412879.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei 14]
          Length = 413

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 181/397 (45%), Positives = 253/397 (63%), Gaps = 10/397 (2%)

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           +Q + M R+LQGDVGSGKT+VA +A A A++AG QA +MAP  ILA+QH   ++ + +  
Sbjct: 1   TQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPL 60

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            + V  + G++    +R ALE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV
Sbjct: 61  GVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHAMIQDTVEFARLGLVIVDEQHRFGV 120

Query: 409 QQRLKLTQKATA---------PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +QRL L  KA           PH L+M+ATPIPRTL +T   D+D+S I E P GR PI 
Sbjct: 121 EQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPIL 180

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T ++   R DEVI R++     G++ YW+CP IEE +    ++ VE + +L        +
Sbjct: 181 TRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKV 240

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++HGR++  +K +VMD+F     +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQ
Sbjct: 241 GLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQ 300

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG   S C+L+Y  PLS     RL  ++ T DGF IA  DL+ R  GE LG +Q
Sbjct: 301 LRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQ 360

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           SG      A  E    L+E AR  A  ++   P++ +
Sbjct: 361 SGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVVA 397


>gi|269957066|ref|YP_003326855.1| ATP-dependent DNA helicase RecG [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305747|gb|ACZ31297.1| ATP-dependent DNA helicase RecG [Xylanimonas cellulosilytica DSM
           15894]
          Length = 749

 Score =  339 bits (870), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 210/695 (30%), Positives = 356/695 (51%), Gaps = 70/695 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI--LLNDGTGE 100
           DLL ++P  + +      +++++    V++   + + +      R   ++  +++DG  E
Sbjct: 34  DLLRHYPRRYAEPGQLTDMAKLAIGEHVSVLARVERTAVRSNASRNGARLEAVVSDGRHE 93

Query: 101 ITLLFFYRKTEMLK---NVFFEGRKITVTGKIKKLKNRIIMVHPHYIF-HNSQDVN---- 152
           +TL FF +    L+        G     TG +   +    + HP Y+      DV     
Sbjct: 94  LTLTFFAKHPGALRYHEQRLVGGASGVFTGVVGVYRGTRQLTHPDYLMVGEGGDVTDDES 153

Query: 153 --------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
                    P+  A  S+PT   +    + +++ L+   V P+ +  ++  +   PS  +
Sbjct: 154 ALYLASLPIPMYPATASMPT-WKIQRCVRTVLDTLTEDDV-PDPVPLEVRARAGLPSRYD 211

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE-GKIAQ 263
           A  ++H P+  ++       R RL ++E    Q A+   R +   E         G +  
Sbjct: 212 ALKLVHTPQHTQEAYR---GRHRLRFEEAFVLQAAIAQRRARTAAEDATARPARPGGLLD 268

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +    +PF+ T  Q S  +D+  D++Q   M R+LQG+VGSGKT+VAL AM   ++AGGQ
Sbjct: 269 RFDAALPFTLTSGQVSVGEDLAYDLAQPRPMQRLLQGEVGSGKTVVALRAMLQVIDAGGQ 328

Query: 324 AVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIA 372
           A ++AP  +LA QH   ++                    V ++TG++P A R+ AL + A
Sbjct: 329 AALLAPTEVLAAQHARTLRTLLGPLAEGGLLGGAEDGTRVALLTGSLPAAARKTALLQAA 388

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPI 431
            G+A +++GTHAL  +++Q+  L LV+VDEQHRFGV+QR  L  K   APH+L+MTATPI
Sbjct: 389 SGEAGVVVGTHALLSENVQFADLGLVVVDEQHRFGVEQRDALRAKGKVAPHLLVMTATPI 448

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWI 488
           PRT+ +T  GD+++S +T+ PAGR  I TV++P      +    +R++  +  G +AY +
Sbjct: 449 PRTVAMTVFGDLEVSSLTQIPAGRAGISTVVVPAANPRWMQRTWQRVREEVDAGHRAYVV 508

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS------------------------------I 518
           CP+I    E + ++    F+ + +    S                              +
Sbjct: 509 CPRIHPDDEVSGKAAATDFDDVPDFLALSAGDVPDRTPLRAVLEVADQLRETPALAGLAV 568

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++HG++   +K++ M  F  GT ++L++TTVIEVG+DV +A+++++ +A+ FGL+QLHQ
Sbjct: 569 DVLHGQLPPAEKDAAMTRFAAGTSQVLVSTTVIEVGVDVPEATVMVVFDADRFGLSQLHQ 628

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG     C+L+        +  R+  L  T DGF +A+ DL+ R EG++LG  Q
Sbjct: 629 LRGRVGRGSAPGLCLLVSTAEPGTPAAARVEALAETTDGFRLAQLDLELRSEGDVLGAAQ 688

Query: 639 SGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPD 672
           SG    L     + D+ L+E AR++A  ++  D D
Sbjct: 689 SGRTSGLRLLRVVKDADLIEEARREAAGVVAADVD 723


>gi|317472737|ref|ZP_07932050.1| ATP-dependent DNA helicase RecG [Anaerostipes sp. 3_2_56FAA]
 gi|316899763|gb|EFV21764.1| ATP-dependent DNA helicase RecG [Anaerostipes sp. 3_2_56FAA]
          Length = 458

 Score =  339 bits (870), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 178/432 (41%), Positives = 279/432 (64%), Gaps = 6/432 (1%)

Query: 242 LMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           LM+++ ++E    PI V G+ A ++++++P+  T +Q+ A+ ++ +D+  +  M R++QG
Sbjct: 8   LMKQEHREEKNRYPIPVCGE-ADRLIQSLPYELTGAQKRALLEMQKDLMGEKVMNRLVQG 66

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT++A+I +    +AG Q V+MAP  +LA QHYE  ++      +   ++TG++ 
Sbjct: 67  DVGSGKTILAVILLLMCAKAGYQGVLMAPTEVLASQHYETFQELLGPFGVSAALLTGSVK 126

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +R+  + I + +  I+IGTHAL QD+++Y +L LVI DEQHRFGV+QR  L++K   
Sbjct: 127 AKEKREIYQGIKNHEYDIVIGTHALIQDAVEYDRLALVITDEQHRFGVRQREILSKKGKE 186

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PHVL+M+ATPIPRTL +   GD+D+S I E P  R PIK  ++  +        ++  ++
Sbjct: 187 PHVLVMSATPIPRTLAIIMYGDLDVSVINELPKNRLPIKNCVVNQSYRPNAYRFMEKQVA 246

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFK 538
           EG++ Y ICP +EE +     +V++  N L E F  SI   ++HG+M   +K+ +MD F 
Sbjct: 247 EGRQIYIICPMVEESEAMEGENVIQYANMLREQFPPSIQIGVLHGKMKPKEKQKIMDEFS 306

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + ++L++TTVIEVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE  S CI +   
Sbjct: 307 ECSIQILVSTTVIEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEHQSYCIFMSGV 366

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
              K +  RL VL  + DGF IA +DLK R  G+  G++QSGM  F++A    +  LL+ 
Sbjct: 367 K-KKETMERLEVLNKSNDGFYIANQDLKLRGPGDFFGVRQSGMMDFVLADIYTNADLLKQ 425

Query: 659 ARKDAKHILTQD 670
           A  DA H L ++
Sbjct: 426 A-SDAVHQLCEE 436


>gi|183981755|ref|YP_001850046.1| ATP-dependent DNA helicase RecG [Mycobacterium marinum M]
 gi|183175081|gb|ACC40191.1| ATP-dependent DNA helicase RecG [Mycobacterium marinum M]
          Length = 743

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 215/660 (32%), Positives = 352/660 (53%), Gaps = 69/660 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKIS----EISEERIVTITGYISQHSSFQLQK---RRPYKILLN 95
           DLL ++P S+++   R        E+ E   +TI   I++  SF ++K   R   +I L 
Sbjct: 31  DLLRHYPRSYVEGGARRGTDDEQPEVGEH--ITIVDVITETKSFPMKKTPRRLCLRITLG 88

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-- 153
            G  ++T  FF    + +K    +  ++ ++G++   K  + + HP ++  +S D     
Sbjct: 89  SGRNKVTATFF--NADYIKKGLTKNTRVMLSGEVGYFKGVMQLTHPAFLILDSPDGQHHG 146

Query: 154 -----PLIEAVYSLPTGLSVDLFK-------------------KIIVEALSRLPVLPEWI 189
                 + +A  ++   L+++ F+                   K + + L  L  + + +
Sbjct: 147 TKSLKSIADASQAISGELAMEEFERRFFPIYPASTKVQSWDIFKCVRQVLEVLDPVDDPL 206

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              L  +    S  +A   IH    A+D      AR RL +DE +  Q AL+  R     
Sbjct: 207 PAALRAEHGLISEDDALRAIH---LAEDESEREQARRRLTFDEAVGLQWALVARRHGELS 263

Query: 250 EIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E G P       +A ++L  +PF  T  Q   + ++   ++    M R+LQG+VGSGKT+
Sbjct: 264 ESGPPAPARADGLAAELLARLPFELTAGQREVLDELSDGLAATRPMNRLLQGEVGSGKTI 323

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITG 357
           VA++AM   V+AG Q  ++AP  +LA QH   I                +    V ++TG
Sbjct: 324 VAVLAMLQMVDAGYQCALLAPTEVLAAQHLLSINDVLGPLAMGGQLGGADNATRVALLTG 383

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           +M    +++    IA GQ  I+IGTHAL QD+++++ L +V+VDEQHRFGV+QR +L  K
Sbjct: 384 SMTAGQKKQVRAEIASGQVGIVIGTHALLQDAVEFHNLGMVVVDEQHRFGVEQRDQLRAK 443

Query: 418 ATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDE 470
           A A   PH+L+MTATPIPRT+ LT  GD++ S + E P GR+PI T +I +      +D 
Sbjct: 444 APAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPRGRQPITTNVIFVKDKPAWLDR 503

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS----LHEHFTSS------IAI 520
             +R+   ++ G++AY + P+I+E  ES+      R ++    L+    ++      +A+
Sbjct: 504 AWQRIVEEVAAGRQAYVVAPRIDESDESDNAENGARPSATAVGLYSRLQAAELAGLRLAL 563

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGR+S  +KE+ M +F+ G   +L+ TTVIEVG+DV +A+++++ +A+ FG++QLHQLR
Sbjct: 564 MHGRLSADEKEAAMAAFRAGNVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQLHQLR 623

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GR+GRGE  S C+L         +  RL  +  T DGF +AE DLK+R+EG++LG  QSG
Sbjct: 624 GRIGRGEHPSLCLLASWVSPGSPAGRRLRAVAETMDGFDLAELDLKERREGDVLGRNQSG 683


>gi|325661174|ref|ZP_08149801.1| hypothetical protein HMPREF0490_00534 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472681|gb|EGC75892.1| hypothetical protein HMPREF0490_00534 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 533

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 189/506 (37%), Positives = 297/506 (58%), Gaps = 10/506 (1%)

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           K + +AL  L +  E +   +  K        +   IH P++ ++F     ARERL ++E
Sbjct: 8   KAVRQALDYLELQKEILPATVRMKYHLAEYNFSVRGIHFPKEKQEF---YQARERLVFEE 64

Query: 233 LLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            L   ++L  M+ K+ +     P++   +I +  L+ +P+  T +Q+   + + +DM+  
Sbjct: 65  FLVFILSLRQMKEKKERSRNQFPVHPSEEI-EVFLKKLPYELTNAQKKVWEQLQKDMAGT 123

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI- 350
           + M R++QGDVGSGKT++A++++ +    G Q  +MAP  +LA+QH++ I +  +  +I 
Sbjct: 124 HTMARLIQGDVGSGKTIIAVLSLMSVAFCGWQGAMMAPTEVLARQHFDSITEMFEQYEIP 183

Query: 351 -IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
             VE++TG+M    +R A  RI  GQA II+GTHAL Q+ + Y  L LV+ DEQHRFGV+
Sbjct: 184 LKVELLTGSMTAKEKRLAYGRIESGQAQIIVGTHALIQEKVIYANLALVVTDEQHRFGVK 243

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR +   K   PH+L+M+ATPIPRTL +   GD+D+S I E PA R PIK  ++  +   
Sbjct: 244 QREQFAGKGELPHILVMSATPIPRTLAIILYGDLDVSVIDELPANRLPIKNCVVDTSYRK 303

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSD 527
              + ++  ++EG++ Y ICP +EE +     +V++    L       I +  +HG+M  
Sbjct: 304 TAYQFIRRQVAEGRQCYVICPMVEESEHLEAENVIDYAEKLQGELGEDIIVDFLHGKMKQ 363

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             K+ +M+ F     ++L++TTVIEVGI+V +A++++IENAE FGLAQLHQLRGRVGRG+
Sbjct: 364 SQKDEIMERFGKNESQVLVSTTVIEVGINVPNATVMMIENAERFGLAQLHQLRGRVGRGK 423

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S CI +      K +  RL +L  + DGF IA EDLK R  G++ GI+QSG+  F + 
Sbjct: 424 YQSYCIFMSGSK-GKETKERLEILNRSNDGFYIANEDLKLRGPGDLFGIRQSGLMDFRLG 482

Query: 648 QPELHDSLLEIARKDAKHILTQDPDL 673
                  +L+ A + A  IL     L
Sbjct: 483 DVFQDAKILQRANEAADWILKNGKGL 508


>gi|240168966|ref|ZP_04747625.1| ATP-dependent DNA helicase RecG [Mycobacterium kansasii ATCC 12478]
          Length = 738

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 217/665 (32%), Positives = 352/665 (52%), Gaps = 79/665 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEE--RIVTITGYISQHSSFQLQK---RRPYKILLNDG 97
           DLL ++P S+++   R  + +   E    +TI   I++  +F ++K   R+  +I L  G
Sbjct: 30  DLLRHYPRSYVEGGARRGVGDERPEAGEHITIVDVITETETFPMKKTPRRQCLRITLGTG 89

Query: 98  TGEITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-- 152
             ++T  FF   Y K ++ KN      K+ ++G++   K  + + HP ++  +S D    
Sbjct: 90  RNKVTATFFNADYIKKDLTKNT-----KVMLSGEVGFFKGVMQLTHPAFLILDSPDGKNH 144

Query: 153 ----------------------------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
                                       FP+  A   +    S D+FK  + + L  L  
Sbjct: 145 GTRSLKSIADASKAISGEVAMEEFERRFFPIYPASTKVQ---SWDIFK-CVRQVLEVLDP 200

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + + +  D+  +    S  EA   IH    A+D      ARERL +DE +  Q AL+  R
Sbjct: 201 VDDPLSPDVRAEHGLVSEDEALRAIH---LAEDEPDRRRARERLTFDEAVGLQWALVARR 257

Query: 245 KQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
                E G P       +A ++L  +PF  T  Q   +  + +++S    M R+LQG+VG
Sbjct: 258 HGELSESGPPAPPRSDGLAAELLGRLPFELTAGQREVLAVLSEEISATRPMNRLLQGEVG 317

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIV 352
           SGKT+VA++AM   V+AG Q  ++AP  +LA QH   I                +    V
Sbjct: 318 SGKTIVAVLAMLQMVDAGYQCALLAPTEVLAAQHLTSINDILGPLAMGGQLGGADNATRV 377

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+M    ++     +A G+  I++GTHAL QD+++++ L +V+VDEQHRFGV+QR 
Sbjct: 378 ALLTGSMTAGQKKDVRAAVAGGEVGIVVGTHALLQDAVEFHNLGMVVVDEQHRFGVEQRD 437

Query: 413 KLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467
           +L  KA A   PH+L+MTATPIPRT+ LT  GD++ + + E P GR+PI T +I +    
Sbjct: 438 QLRGKARAGITPHLLVMTATPIPRTVALTVYGDLETATLRELPRGRQPITTNVIFVKDKP 497

Query: 468 --IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV----VERFNSLHEHFTSS---- 517
             +D   +R+   ++ G++AY + P+I+E  E +         E    L+   +S     
Sbjct: 498 AWLDRAWQRIIEEVAAGRQAYVVAPRIDESDEPDKEPAGTKPAETAEGLYARLSSRELAN 557

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HGR+S  +K++ M +F+ G   +L+ TTVIEVG+DV +A+++++ +A+ FG++Q
Sbjct: 558 LRLGLMHGRLSADEKDAAMAAFRAGRIDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQ 617

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGR+GRG   S C+L    P +  +  RL  +  T DGF +A+ DLK+RKEG++LG
Sbjct: 618 LHQLRGRIGRGAHPSLCLLASWVPPASPAGERLRAVAKTMDGFALADLDLKERKEGDVLG 677

Query: 636 IKQSG 640
             QSG
Sbjct: 678 RNQSG 682


>gi|332530086|ref|ZP_08406036.1| ATP-dependent DNA helicase RecG [Hylemonella gracilis ATCC 19624]
 gi|332040559|gb|EGI76935.1| ATP-dependent DNA helicase RecG [Hylemonella gracilis ATCC 19624]
          Length = 752

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 236/705 (33%), Positives = 362/705 (51%), Gaps = 82/705 (11%)

Query: 42  IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           ++L  + P  + D      I+E+ +  +    G + + S  +++ RR     + D  G  
Sbjct: 41  MELALHLPLRYEDETTLTPIAELRDGDMAQAEGVVRE-SRVEVRARRQLIARIEDDAGHT 99

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA--- 158
            LL F       + +   G+++ V G+++       MVHP      +     PL +A   
Sbjct: 100 LLLRFLNFYPSQQKLLSVGQRVRVRGEVRGGFLGREMVHPEC---KAVQAGAPLAQALTP 156

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ--------KKSFPSIAEAFNIIH 210
           VY    GL     +K +  AL +L VL E +    LQ           +P +  A + +H
Sbjct: 157 VYPTTAGLPQAYLRKAVGRALDKL-VLDETLPPQALQIWPGGPRVLADWP-LHAALDYLH 214

Query: 211 NPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQ--FKKEIGIPINVEGKIA-- 262
           +PR         + + PA  RL  +ELLA Q++ L  R+    ++   + +   G  A  
Sbjct: 215 HPRPEVSLAALQDRSHPAWLRLKAEELLAQQLSQLQARQAQALRRAPTLALGQRGGEAKG 274

Query: 263 --QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
             +++L  +PF+ T +Q    ++I +D+++ + M R+LQGDVGSGKT+VA +A A  ++A
Sbjct: 275 LHEQLLAVLPFALTGAQRRVSEEIARDLARPSPMHRLLQGDVGSGKTVVAALAAAVCIDA 334

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI----AHGQA 376
           G Q V+MAP  ILA QH + +  +     + V  + G      RR+ LE I      G A
Sbjct: 335 GYQCVLMAPTEILASQHVKKLVDWLTPLGVRVAWLAGGQKTKERRETLEAIDRAPQEGGA 394

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--------------TAPH 422
            +I+GTHA+ QD ++++KL L IVDEQHRFGV QRL L +K                 PH
Sbjct: 395 QLIVGTHAVIQDKVRFHKLGLAIVDEQHRFGVAQRLALREKVMEGGDAVEGGAKQPVEPH 454

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+M+ATPIPRTL ++   D+D+S + E P GR PI T +I   R  E+I R++  L+EG
Sbjct: 455 MLMMSATPIPRTLAMSYYADLDVSTLDELPPGRSPIVTRVISEQRRPELIARIRAQLAEG 514

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------------------------ 518
           ++ YW+CP IEE +  +  +      + H   T+++                        
Sbjct: 515 RQVYWVCPLIEESEAVDLTNA----TATHAELTAALNDAPHAAPLPPEGASPALGRPGGG 570

Query: 519 -----AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                 ++H R+   +K++VM  F  G   LL++TTVIEVG+DV +A++++IE+AE FGL
Sbjct: 571 GGIQIGLLHSRLPAAEKQAVMAEFVAGRMGLLVSTTVIEVGVDVPNATLMVIEHAERFGL 630

Query: 574 AQLHQLRGRVGRGEEISSCILLYH----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
           +QLHQLRGRVGRG + S+C+LLY     P L + +  RL  +  T DGF IA  DL+ R 
Sbjct: 631 SQLHQLRGRVGRGAQASACVLLYSTGDAPRLGQTARERLKAMAETNDGFEIARRDLEIRG 690

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            GE LG +QSG      A       LL+ AR+ A  +L Q P L 
Sbjct: 691 PGEFLGARQSGAALLRFADLATDGELLDWARQTAALMLAQHPVLA 735


>gi|319892225|ref|YP_004149100.1| ATP-dependent DNA helicase RecG [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161921|gb|ADV05464.1| ATP-dependent DNA helicase RecG [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464678|gb|ADX76831.1| ATP-dependent DNA helicase RecG [Staphylococcus pseudintermedius
           ED99]
          Length = 681

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 208/631 (32%), Positives = 342/631 (54%), Gaps = 19/631 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DL+ Y P+ + D      ++   +E  VT+ G +    +     R   K+ ++     I 
Sbjct: 37  DLVLYLPTRYEDNTL-VDLTTAEDESHVTVRGEVYSTPTVAFFGRNRSKLTVHLMINGIA 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
           +   +     LKN       + + GK  + K  I      +      D  F     VY +
Sbjct: 96  VKAVFFNQPYLKNKIQLHETVVIKGKWSRRKQEINGQKMFFDLSQLADAQFT---PVYRV 152

Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222
             GL     + +I + L  + +  EW+   + ++    ++ +  + +H   +AKD +   
Sbjct: 153 KEGLKQKTLRDMIQQTLQDITI-HEWLPASMREQYKLETLHDTIHALH---EAKDQQSLL 208

Query: 223 PARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            AR   A+ E    ++ +  L R +   E  I +  + +  +  +  +PF  T+ Q+ ++
Sbjct: 209 RARRTFAFTEFFMFELRMQWLNRMEKMSEEAIEVQYDIQQVKTFIETLPFELTEGQKQSV 268

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +I +D+    RM R+LQGDVGSGKT+VA I M A   AG Q+ +M P  ILA+QH E +
Sbjct: 269 NEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYAMKTAGYQSALMVPTEILAEQHAESL 328

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            +      + V ++TG++    R+  LER+A+G+   +IGTHAL QD + ++ + LVI D
Sbjct: 329 VELF-GPYMNVALLTGSVKGKKRQLLLERLANGEIDCLIGTHALIQDDVAFHNVGLVITD 387

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           EQHRFGVQQR KL +K    +VL MTATPIPRTL ++  G++D+S I   P GRKPI+T 
Sbjct: 388 EQHRFGVQQRQKLREKGALSNVLFMTATPIPRTLAISVFGEMDVSSIKSLPKGRKPIETY 447

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---- 517
            +   +  +VIE ++  L +G++AY I P IE    S     V+   +L+E+   +    
Sbjct: 448 WVKHEQYAQVIEHMERELRQGRQAYVISPLIE---SSEHLEDVQNAIALYENLQVALPQR 504

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I ++HG+MS  +K+ VM  +      +L+ATTV+EVG++V +A+ ++I +A+ FGL+ L
Sbjct: 505 RIGLLHGKMSADEKDDVMHRYSAHELDVLVATTVVEVGVNVPNATFMMIYDADRFGLSTL 564

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGR +  S C+L+  P  ++    R+ ++  T DGF ++E+DL+ R  G+  G+
Sbjct: 565 HQLRGRVGRSDFQSYCVLIASPK-TETGIERMQIMTQTTDGFELSEKDLEMRGPGDFFGV 623

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           KQSG+P FL+        +LE+AR +A  ++
Sbjct: 624 KQSGLPDFLVGNLVEDYRMLEVARDEAAQLM 654


>gi|303234025|ref|ZP_07320674.1| ATP-dependent DNA helicase RecG [Finegoldia magna BVS033A4]
 gi|302494950|gb|EFL54707.1| ATP-dependent DNA helicase RecG [Finegoldia magna BVS033A4]
          Length = 678

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 230/669 (34%), Positives = 358/669 (53%), Gaps = 32/669 (4%)

Query: 13  LSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI-SEERI 69
           LS  +G+GKK    L+   IIN          DLL Y P  + +R     I +   EE  
Sbjct: 3   LSEIKGIGKKKLEVLNSMGIININ--------DLLNYFPYRYENRSIIQNIIDTRDEENC 54

Query: 70  VTITGYISQHSSFQLQKRRPYKILLN-DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           V    +IS+  +  L++       +  D T +I++ +F      ++N         + GK
Sbjct: 55  VIKVKFISKPITKYLRRNLNLTTAIAFDDTSKISVSWF--NQPFIRNQILPNTTYYLYGK 112

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-----P 183
           I++++N+  +  P  I   +      +I  +Y +  G++ +   K +  A+         
Sbjct: 113 IQRVQNQFKISSP--ILSKTFGGKLGIIYPIYKVKKGITNNDMIKFVDFAIKHCIDEIKN 170

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           V+P  + K+         I    N I N  K  D+     AR  L  +E++  Q+A+  M
Sbjct: 171 VIPYSMIKNY-------DIENKRNAIKNIHKPVDYAQFKRARTALVLEEVIIMQLAMKSM 223

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +    +   I    +  I    + ++ F  TK Q  AIKDI  DM+ + RM R++QGDVG
Sbjct: 224 KTSLNQTNYIKFQSDESI-NIFINSLKFELTKGQLEAIKDIEMDMTSEKRMNRLVQGDVG 282

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA  A+  +  +G Q+  MAP  ILA QHYE + +      I V ++  ++ ++ 
Sbjct: 283 SGKTIVAEAAIFKSHSSGYQSAFMAPTDILATQHYESLSEDFSKFGIKVCLLKSDLTKSE 342

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +   L+ I  G   +I+GTHA+ QD +++ +L LVI DEQHRFGV QR K++ K   P V
Sbjct: 343 KDLVLKGIKSGYFDVIVGTHAIIQDFVEFKRLGLVITDEQHRFGVGQRKKISDKGQNPDV 402

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL L+  GD+DIS I E P GRK I+T  +  +    + + ++  +  G 
Sbjct: 403 LVMTATPIPRTLALSYYGDLDISTINEMPKGRKIIETYSVGFSYEKRIADFIRKQVDNGF 462

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLH-EHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY +CP IEE +     +V E +N L  E+F+  ++ ++HG+M   +KE  M  F +G 
Sbjct: 463 QAYIVCPLIEESESLELENVTELYNRLTGEYFSDINVGMLHGKMKSSEKEETMKDFVDGK 522

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            K+L++TTVIEVG++V  A++I+I NAE FGL+QLHQLRGRVGR  + S CIL+ +   S
Sbjct: 523 TKILVSTTVIEVGVNVRKANVIVIYNAERFGLSQLHQLRGRVGRSSDQSYCILINNAH-S 581

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                R++++  T  GF ++++DL  R  G++LG +QSG+P   IA  E    L+E A  
Sbjct: 582 DEQMERMNIMVKTNSGFELSQKDLMMRGSGDLLGTRQSGIPLLNIADLEKDYDLIEKAAV 641

Query: 662 DAKHILTQD 670
              +I T D
Sbjct: 642 ITDYIYTND 650


>gi|256004524|ref|ZP_05429503.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum DSM 2360]
 gi|255991529|gb|EEU01632.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum DSM 2360]
          Length = 689

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 230/618 (37%), Positives = 343/618 (55%), Gaps = 23/618 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ--LQKRRPYKILLNDGTGE 100
           DL+ + P  + DR    KI +++E    T  G I    + +   Q    Y+  + D TG 
Sbjct: 37  DLITHFPYDYEDRSNIKKICQLTEGESCTFEGIIMSKVTERKIRQGLTLYQAYIKDDTG- 95

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD-VNFPLIEAV 159
            T++  +     +K V   G      GKI +    + + +P Y     ++  N   I  V
Sbjct: 96  -TIIATWYNQPYIKKVLTVGESYIFYGKIVRGYKTLEVQNPVYEKACKEEHKNTMKIVPV 154

Query: 160 YSLPTGLSVDLFKKIIVEALSRLP-----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           Y     L+ +  + ++  AL  +      VLP W+ K    K     I  AF+ IH PR 
Sbjct: 155 YHATANLTQNTIRTVMQNALELVDGNLEDVLPLWVRK----KYCLCDINYAFSNIHFPRN 210

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFK--KEIGIPINVEGKIAQKILRNIPFS 272
             D +    AR RL ++EL   Q+ LL ++      KE GI      K     + +I F+
Sbjct: 211 DGDIK---NARYRLVFEELFLLQLGLLSVKTVLSDGKE-GIAFAPNRKEMVDFINSIGFT 266

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T +Q+   ++I +DM     M R++QGDVGSGKT+VA +A+A AV++G Q  +M P  I
Sbjct: 267 LTNAQKRVWEEIEKDMESNRVMNRLVQGDVGSGKTIVAALALAKAVKSGYQGAMMVPTEI 326

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QHYE +K       I V ++ G+  +  R + L +I  G+ +I+IGTHAL ++ +++
Sbjct: 327 LAKQHYESLKDIMGKHGINVALLVGSQTKKQRSEILSKIESGEVNIVIGTHALIEEKVKF 386

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            KL LVI DEQHRFGV+QR  L+ K   P +L+MTATPIPRTL L   GD+DIS I E P
Sbjct: 387 SKLGLVITDEQHRFGVRQRAMLSNKGINPDILVMTATPIPRTLALILYGDLDISIIDELP 446

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-H 511
            GRKP+KT  +  +    +   +K  + EG++AY ICP ++E  E   +S ++    +  
Sbjct: 447 PGRKPVKTYAVDNSMRQRINNFIKKQILEGRQAYIICPLVDESDEIEAKSALKTAEKIAK 506

Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           E F    + ++HG+M   +KE VM  F  G   +L++TTV+EVG++V +A+++++ENAE 
Sbjct: 507 EDFKDFRVGLLHGKMPAGEKEEVMQKFLKGEIDILVSTTVVEVGVNVPNATLMVVENAER 566

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FGLAQLHQLRGRVGRG   S CI LY+   S+ +  R+ V++ T DGF+I+E+DL  R  
Sbjct: 567 FGLAQLHQLRGRVGRGPHQSYCI-LYNESKSQIAKERMKVMQETTDGFVISEKDLLIRGP 625

Query: 631 GEILGIKQSGMPKFLIAQ 648
           GE  G +Q G+P   IA 
Sbjct: 626 GEFFGTRQHGLPDLKIAN 643


>gi|229822821|ref|ZP_04448891.1| hypothetical protein GCWU000282_00110 [Catonella morbi ATCC 51271]
 gi|229787634|gb|EEP23748.1| hypothetical protein GCWU000282_00110 [Catonella morbi ATCC 51271]
          Length = 678

 Score =  338 bits (868), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 214/648 (33%), Positives = 363/648 (56%), Gaps = 22/648 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH---SSFQLQKRR-PYKILLNDGT 98
           DL+F+ P  F     RP  + + +E+ VT+ G +      + F  +K R  +K+ +ND  
Sbjct: 33  DLMFHFPFRFESVAVRPLATILDQEK-VTLKGKVVTPPVVAYFGGKKSRVSFKLAVNDH- 90

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            EI ++ F+ +   LK     G++  + GK +  +  ++ +    +    QD        
Sbjct: 91  -EIIIVSFFNQP-YLKQAIQLGQERAIYGKWQSNRQTLLGMKLIQVAQEGQD-----FAP 143

Query: 159 VYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VY    GL        I  + ++    +PE + + L  +     +  A   +H P    D
Sbjct: 144 VYHATKGLKQSAIVTSIAASFNQYQEAIPEVLPQHLNDQYRLLDLPLALYAMHFP---AD 200

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            E    A  ++ Y E    Q  L    KQ + E GI I+ +    +  +  +P+  T++Q
Sbjct: 201 QEQHHQATRKIIYQEFFLYQWRLQAALKQHETEPGIQIHYDNDQLKTWIGRLPYELTQAQ 260

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +  + +I +D+  ++ M R++QGDVGSGKTLVA +A+ A++  G Q+ +MAP  ILA+QH
Sbjct: 261 KQVVNEICRDLMAQHPMRRMVQGDVGSGKTLVAFLAILASLSGGFQSALMAPTEILAKQH 320

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            +   +   +  I   ++T  M    ++  L+ +A+GQ  ++IGTHAL Q+++++ +L L
Sbjct: 321 AQSFNQLFASMGIEAALLTSAMTAKAKQAVLDGLANGQIQVVIGTHALIQETVKFKQLGL 380

Query: 398 VIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
           VI+DEQHRFGV QR  L  K    A ++L MTATPIPR+L +T  G++ +S I + P GR
Sbjct: 381 VIIDEQHRFGVGQRQALVDKNDKIAVNLLQMTATPIPRSLAMTLYGEMHVSTIDQLPKGR 440

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHF 514
           +PI T  +  ++++E+ + +   L  G + Y++ P IE  +      +V+E  + L + F
Sbjct: 441 QPITTRWLKEDQLEELEDHVAQELEAGHQVYYVLPLIESSEHLEQIENVLEVADRLADRF 500

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
            S  + ++HG+++  ++E+VMD FK    ++L+ATT++EVG+DV +A+I++I++AE FGL
Sbjct: 501 PSFKVDVLHGQLNKEEQEAVMDRFKQNQVQILVATTMVEVGVDVPNATIMVIQSAERFGL 560

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           AQLHQLRGRVGR +  S C L+  P  ++    RL ++ + +DGFLI+ EDLK R  G++
Sbjct: 561 AQLHQLRGRVGRSQLASYCYLIGSPS-TEQGKERLKIMVDHQDGFLISREDLKIRGMGDL 619

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           +G  QSG+P+F  A     + +L +ARKD + +L     L+    Q++
Sbjct: 620 MGRSQSGLPEFHYANLIEDEKILTVARKDVQDLLKHPERLSEAEWQAL 667


>gi|256372288|ref|YP_003110112.1| DEAD/DEAH box helicase domain protein [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008872|gb|ACU54439.1| DEAD/DEAH box helicase domain protein [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 720

 Score =  338 bits (868), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 229/666 (34%), Positives = 337/666 (50%), Gaps = 43/666 (6%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI--LLNDGTGE 100
           DL+ Y+P  ++DR     I++      V + G I+       +KR    +   L D TG 
Sbjct: 38  DLVTYYPRRYVDRTRHVMIADAVPGEEVVLIGRIASVRVVPTRKRSMTLVEARLVDETGS 97

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           + L FF R+    K +      I V GK++  +    +V+P  +     D    ++  +Y
Sbjct: 98  VGLRFF-RQPWRAKQLGRLHGDIAVFGKVELFRKERQLVNP--LVDPIGDRTGRIV-PLY 153

Query: 161 SLPTGLSVD--LFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
            L  G  +D       ++  L R   + E I + +          EA   IH P      
Sbjct: 154 PLRDGAGIDSGAIASAVLGLLERFSPIAETIPRAVRDALGLLGREEALRAIHAP---ATL 210

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQ-------FKKEIGIPINVEGKIAQKILRNIPF 271
           E    AR R+A++EL   Q+ L L+R++       F  ++       G+   ++L  +PF
Sbjct: 211 EQRLEARRRIAFEELFRIQVMLGLVRRERDAHQRGFAHDVAPFGPGTGRRVAELLARLPF 270

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
           S T +Q   + DI  DM +   M R+LQGDVG+GKTLVALIA   A++ G QA ++AP  
Sbjct: 271 SLTAAQRRVVTDIAGDMQRDRPMHRLLQGDVGAGKTLVALIAALFAIQGGHQAALLAPTE 330

Query: 332 ILAQQHYEFIKKYTQNTQ----------------IIVEIITGNMPQAHRRKALERIAHGQ 375
           +LA+QH+  I       +                I V ++TG +    R   +E +A G 
Sbjct: 331 VLAEQHFRTILSLLGTAREARERTPGLFDDEVAPIEVALLTGTVASKRRADIVEGLARGT 390

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATP 430
             +++GTHAL  + +    L LV+VDEQHRFGV+QR  L  +           L+MTATP
Sbjct: 391 IDLVVGTHALLTEGVNLASLGLVVVDEQHRFGVEQRSLLRDRHAEIAGRVADTLVMTATP 450

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEVIERLKVVLSEGKKAYWIC 489
           IPRT  +T  GD+D+S I E P GR PI+T  +   +   E  + L+  +  G++ Y +C
Sbjct: 451 IPRTAAMTVYGDLDLSVIDELPPGRTPIRTKWLRERSAYVEAFDYLRAEVGRGRQGYVVC 510

Query: 490 PQIEEKKESNFRSVVERFNSL--HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             +EE +    RS  E F  L   E     + ++HGRM   +K+  M +F+ G   +L+A
Sbjct: 511 ALVEESERLQARSAEEEFARLGNSELAGLRLGLLHGRMPAREKDRQMAAFRAGIIDVLVA 570

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG+DV +A+++IIE+A+ FG+AQLHQLRGRVGRGE  S+C LL        +  R
Sbjct: 571 TTVIEVGVDVPNATVMIIEDADRFGIAQLHQLRGRVGRGEHASACFLLAETDQGPTA-AR 629

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L  L+ T DGF +AE DL  R EG +LG +QSG     +A       L+E AR  A  +L
Sbjct: 630 LEALERTTDGFELAEVDLVLRGEGTVLGARQSGRSDLKLASVVRDRPLVEAARHHATRLL 689

Query: 668 TQDPDL 673
             DP L
Sbjct: 690 EVDPSL 695


>gi|297571644|ref|YP_003697418.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931991|gb|ADH92799.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 741

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 223/691 (32%), Positives = 352/691 (50%), Gaps = 61/691 (8%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY--KILLNDGTGE 100
           DLL + P     R     I  + E   VT+   +   SS  +  R  +   + ++DG  +
Sbjct: 48  DLLNHVPFRVARRGELLPIESVREGDSVTVVARVMDSSSRPMNNRAGFILNVTISDGAHD 107

Query: 101 ITLLFFYRKTEML---KNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVN---- 152
           + L FF +    L   +N    G   T +G I + + R+ + HP Y +  +  +++    
Sbjct: 108 LDLTFFAKHKRPLAYHENALCPGTIATFSGTISQYRGRLQLTHPEYEVVEDESEIDEAKI 167

Query: 153 ---FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209
               P+  A+  +P+   ++     ++  LS   V P+ +  +  +K   PS  EAF+ +
Sbjct: 168 ARPIPIYHAMAKVPS-WQIERAVGTVLGTLSPADV-PDLLPAEYREKYGLPSRFEAFHAV 225

Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK--KEIGIPINVEGKIAQKILR 267
           H P   +D E  S AR R A++E    Q  L     +    +    P  ++G +A  +  
Sbjct: 226 HQP---QDVEEWSRARLRFAHEEAFVLQTVLAQRAAEVSTTQAPSCPPRLDG-VAAGLDA 281

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +PF+ T SQ      I + +S    M  +LQGDVGSGKT+VAL AM   V++G QAV++
Sbjct: 282 RLPFTLTDSQVEVGARISEALSGTLPMRCLLQGDVGSGKTIVALRAMLQVVDSGRQAVLL 341

Query: 328 APIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AP  +LAQQH+  I                +    VE++TG++  A RR+ L  +A G  
Sbjct: 342 APTEVLAQQHFSTISALLGELASAGELGAPSCATRVELLTGSLGMAQRRRTLAHLASGAP 401

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I++GTHAL  D +Q   L LV+VDEQHRFGV QR +L   A   H+L+MTATPIPRT+ 
Sbjct: 402 LIVVGTHALLGDQVQLPSLGLVVVDEQHRFGVDQRDRLAHGA---HLLVMTATPIPRTVA 458

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +T  GD+D++ +  +   R  + T ++P      +  V +R +  +  G + + +CP+I 
Sbjct: 459 MTVFGDLDVAVLGNRE--RSAMSTSVVPAFNDRWMARVWQRAREEIDSGGRVFVVCPRIS 516

Query: 494 EKKE------------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            K+                   +N  SV ER  +L      +I ++HG+MS  DK +VM+
Sbjct: 517 AKEADDEAVLVDLPADLDQPEMANVESVSERLRNLPVFAGVAIGVVHGQMSAADKNAVMN 576

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS--CI 593
               G   L++ATTVIEVG+D+ DA++++I +AE FGL+QLHQLRGRVGRG +     C+
Sbjct: 577 DMAAGRVHLVVATTVIEVGVDIPDATVMVIMDAERFGLSQLHQLRGRVGRGNKNKPGLCL 636

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
            + +      +  R+     T DGF +AE D+  R  G++LG  QSG+   L     + D
Sbjct: 637 AVTNAAPGTLAAQRVDAFAGTTDGFALAEADVALRSVGDVLGASQSGIRSSLRFVSVVKD 696

Query: 654 SL-LEIARKDAKHILTQDPDLTSVRGQSIRI 683
            L +E AR  A+ ++  DP L + R  ++ +
Sbjct: 697 KLAIEQARAGARELVGSDPQLRNHRALAVAV 727


>gi|261749557|ref|YP_003257243.1| ATP-dependent DNA helicase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497650|gb|ACX84100.1| ATP-dependent DNA helicase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 705

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 224/657 (34%), Positives = 362/657 (55%), Gaps = 35/657 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEI-----SEERIVTITGYIS--QHSSFQLQKRRPYKILLN 95
           DLLF++P+ ++       ISE+     +E  ++ ITG I+  +  ++Q +KR+     L 
Sbjct: 35  DLLFFYPTKYVRYFILNNISELIKKNPTENTLIQITGKITHLEEINYQNKKRKILVAHLE 94

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL 155
           D TG + L++F +     + +  +   ITV G+IK  + +I ++HP        + N+  
Sbjct: 95  DETGYVELVWF-QTINFFRKIIKKNMTITVHGRIKHFQGKIQIIHPDIQKFQFSEKNYS- 152

Query: 156 IEAVYSLPTGLS---------VDLFKKIIVEALSRLP--VLPEWIEKDLLQKKSFPSIAE 204
           I  +YS+P  L          +++ K +I E+ + +    L + ++K+L+Q+K      E
Sbjct: 153 IYPIYSIPKKLRENGINNSFMIEILKNLIEESKNDIEEIFLQDIMKKELMQRK------E 206

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
           A   IH P+  +   + +  R +      L   +     R +       P +  GK    
Sbjct: 207 ALIQIHFPQSLEKL-FQAKYRLKFEELFFLKLFLLSKKNRNKSSSSNSYPFSRLGKNFYN 265

Query: 265 ILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
             +  +PF  T+ Q+   ++I  D+ +  +M R+LQGDVG GKT++A+ +M  A++ G Q
Sbjct: 266 FYKYCLPFPLTEEQKRVFREIRNDLKKPMQMNRLLQGDVGCGKTIIAVFSMLLALDNGFQ 325

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           + +M P  +LA QHY  IKK      I + ++T +     R+     +  G+  I+IGTH
Sbjct: 326 SCLMVPTEVLAIQHYSSIKKMFSGIGIQLALLTSSTSIQMRKCIYHDVFIGKISILIGTH 385

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGD 442
            L QD++ +  L L I+DEQ RFGV+QR K+ +K    PH+L+MTATPIPRTL +T   D
Sbjct: 386 TLIQDTVHFKNLGLAIIDEQQRFGVEQRAKILEKNERPPHILIMTATPIPRTLAMTLYND 445

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---N 499
           + IS I E P  RKPIKTV        +V+E +K  + +G++ Y + P IE+ K++   N
Sbjct: 446 LKISIIREFPINRKPIKTVHFRNKNRSKVLEIIKNQIQKGRQIYIVHPTIEKFKKNGSKN 505

Query: 500 FRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             +++  +  + E+F      I I+HGRMS  +K   M+ F  G   ++++TTVIEVG+D
Sbjct: 506 LMNLMRGYQLIKENFPKLKDRIGILHGRMSYQEKNIQMNRFLRGETLIMVSTTVIEVGVD 565

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +AS+I+IENA+ FGL+QLHQLRGRVGRG   S C+L+ +  +S  S+ R+ ++  T+D
Sbjct: 566 VPNASVILIENADCFGLSQLHQLRGRVGRGPHPSYCLLMTNEKISVESHFRMKIMCETKD 625

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           G  IA++DLK R  G+++G KQSG   F IA       L++     AK    ++PD 
Sbjct: 626 GLEIAKKDLKLRGSGDLIGTKQSGNAYFRIANLLKDYKLIKEVIPIAKKFFNKNPDF 682


>gi|325000473|ref|ZP_08121585.1| ATP-dependent DNA helicase RecG [Pseudonocardia sp. P1]
          Length = 721

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 211/677 (31%), Positives = 350/677 (51%), Gaps = 59/677 (8%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY---KILLNDGTG 99
           DLL ++P  ++DR     I+ +      T+   +++     ++ RR      ++ ++  G
Sbjct: 32  DLLRHYPRRYVDRGRLTDIAGLVAGEHATVVAQVAKAELRDMRNRRGKMLKAVIRDEKGG 91

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
           E+   FF      L+     G     +GK+     R+ + HP +   +  D   P + +V
Sbjct: 92  ELDCTFF--NGWKLQGFVKAGAVGVFSGKVGVFNRRLQLTHPQFEEIDETDSLRPFL-SV 148

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           Y     ++     + + + L ++    + +   L +++    +  A   IH P    D  
Sbjct: 149 YPANAKVTSQAIARSVRQVLDQIDDPTDPLPDALREREQLTELGRALRRIHVPEAEADIH 208

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI--NVEGKIAQKILRNIPFSPTKSQ 277
               AR RL +DE L  Q+AL L R+Q       P+    EG +      ++PF  T  Q
Sbjct: 209 ---AARHRLVWDEALGVQLALAL-RRQAAVARPAPVCPRTEGGLLAAFDADLPFPLTDGQ 264

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           E+  ++I  D+  ++ M R++QGDVG+GKT+VAL AM   V+AG QA ++AP  +LA QH
Sbjct: 265 EAVGEEIAADLGAEHPMNRLVQGDVGAGKTIVALRAMLQVVDAGKQAAMLAPTEVLAAQH 324

Query: 338 YEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              ++               +    + ++TG+M    RR+AL     G A I++GTHAL 
Sbjct: 325 ARSLRGMLGALGRAGELDATDGATSITLLTGSMGVKARRQALLDAQSGAAGIVVGTHALI 384

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDI 445
           QD++ +  L LV+VDEQHRFGV+QR  L  +   APH+L+MTATPIPRT+ +T  GD+ +
Sbjct: 385 QDTVGFADLGLVVVDEQHRFGVEQRDALRARGERAPHMLVMTATPIPRTVAMTVYGDLAV 444

Query: 446 SKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           S++   P GR P+ T ++P++     I+ V +R++  +  G + Y +CP++ + ++ +  
Sbjct: 445 SELKGLPRGRSPVTTTVVPLSEHPGWIERVWQRIREEVERGHQCYVVCPRVGDTEKEDPE 504

Query: 502 S------------------------VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
                                    + E+   L       I I+HG++   +K++VM +F
Sbjct: 505 LEEPPPEEGESERRPPLAVLDIAPMITEKLGGLR------IGILHGKLPADEKDAVMRAF 558

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +     +L+ATTVIEVG+DV +A+ I++ +A+ FGL+QLHQLRGRVGRG     C+L+  
Sbjct: 559 ERAELDVLVATTVIEVGVDVPNATGIVLLDADRFGLSQLHQLRGRVGRGSAAGLCLLVTE 618

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL-HDSLL 656
            P +  +  RL  +  T DGF +A  DL+ R+EG++LG  QSG    L     L H  ++
Sbjct: 619 MPAATTARERLDAVAGTTDGFELARLDLELRREGDVLGASQSGSRSGLKLLSLLRHGDVI 678

Query: 657 EIARKDAKHILTQDPDL 673
             A+  A+ ++ +DPDL
Sbjct: 679 AKAQLYARDLVDRDPDL 695


>gi|300870577|ref|YP_003785448.1| ATP-dependent DNA helicase RecG [Brachyspira pilosicoli 95/1000]
 gi|300688276|gb|ADK30947.1| ATP-dependent DNA helicase, RecG [Brachyspira pilosicoli 95/1000]
          Length = 690

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 233/671 (34%), Positives = 351/671 (52%), Gaps = 38/671 (5%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           +GVG KY+  L+K       N     DL+ + P ++ DR    KI+E  +        Y+
Sbjct: 17  KGVGPKYAETLAK------KNIFTLYDLITFFPRTYDDRRNTLKINEALKNPDKNSVVYV 70

Query: 77  S--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK-IKKLK 133
                 SF  Q R+   I++ DG   ITL         +     +G K+ +TGK ++ ++
Sbjct: 71  EVIDVGSFTFQFRKKPLIIVTDG---ITLCEVPIYGGRVPAGATKGAKLYLTGKFVRNMR 127

Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-----LPEW 188
            ++      +   +S  +++  I  +Y L  GLS    + +IV  L R        +P+ 
Sbjct: 128 GKVQCRFVEFEKPSSNSLSYGKIVPIYPLTEGLSQKKLRTLIVSELERFEKNMQYDIPKV 187

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           I+K    K    SI E    +H P     FE    ARE L ++E L  Q   L  R+   
Sbjct: 188 IKKKYRLKSFVSSIME----MHFP---TSFEALEEARESLVFEEFLTFQYIHLSERRP-- 238

Query: 249 KEIGIPINVE----GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
               I I  E      + +++  ++ F+ T  Q +AI++I +DM    ++ R+LQGDVG+
Sbjct: 239 ---NILIKEERYNSSNLLERVKLSLGFNLTDDQNNAIEEIKKDMFSNRQLFRLLQGDVGA 295

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ----IIVEIITGNMP 360
           GKT+VA +      E+  Q   +AP  ILA QHY   KK  +N      I ++I+T ++ 
Sbjct: 296 GKTIVAFLTALIPTESNFQTAFLAPTEILALQHYYTFKKIIKNANLEDVIKIDILTSSVS 355

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           Q  R   L+R+  G+ HI++GTH++  D + +  L   IVDEQ RFGV QR KL  K   
Sbjct: 356 QNERAYTLKRLREGKTHILVGTHSILYDEVVFKNLAYAIVDEQQRFGVNQRNKLLSKGNN 415

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              LLMTATPIP++L LT  G++D+S I   P GRK + T    +   D   + LK  ++
Sbjct: 416 VDYLLMTATPIPQSLALTLFGELDLSIIKSMPKGRKGVLTKYKELYERDHCYKFLKSRIA 475

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           +G++ Y + P IE    S      E   +   +F + +I IIHG+M D +KE +M+ F N
Sbjct: 476 KGEQGYVVFPFIENDDSSIITLSSEFERAKQTYFENINIEIIHGKMKDEEKEYIMNRFSN 535

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  K+L +TTVIEVGID  +A+ I+IE AE FGL+QLHQLRGRVGRG+++  C L+ H  
Sbjct: 536 GEIKVLFSTTVIEVGIDNPNATTILIEGAERFGLSQLHQLRGRVGRGDKLGYCYLILHSE 595

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+     R++V+  T DGF IAE+DL+ R  GE LG KQSG+  F +        ++  A
Sbjct: 596 LNDIIKERINVICETTDGFKIAEKDLELRGAGEFLGDKQSGIADFKLGNIVKDAEIMRKA 655

Query: 660 RKDAKHILTQD 670
           + + + +L  D
Sbjct: 656 KDEMRELLKID 666


>gi|306820931|ref|ZP_07454551.1| DNA helicase RecG [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551045|gb|EFM39016.1| DNA helicase RecG [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 671

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 229/650 (35%), Positives = 354/650 (54%), Gaps = 21/650 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEI 101
           DLL Y P  + DR    KISEI     V +   I ++     + K+    I + D TG  
Sbjct: 31  DLLNYFPRKYEDRRIFKKISEIKVRDKVCVHAKIIRYEKVMYKFKKSIINIYVQDDTGTA 90

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            +  F      +     +GR+I   G + +    I+  +   I  +S+     LI  +Y 
Sbjct: 91  CIKLF--NNNFILPDLEKGREIFFYG-LSEENIDILQFNSPEIEFDSKGKKTGLIYPLYP 147

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLP-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
           L  GL       I+  A+    +   E +++D+ ++    S  EA   IH P   KD E 
Sbjct: 148 LTKGLRNSEIINIVKYAIENTNLSDLEILDEDIRKRYRLLSSDEAIKNIHFP---KDIEI 204

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQES 279
              +R R  ++E     I L   +K   ++ GI      +I    I+  +PF+ T SQ  
Sbjct: 205 LKQSRYRCIFNEFFDLNIFLGNYKKNVVEKKGITFK---RIDLSSIINKLPFTLTSSQNK 261

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            + DI+ DMS++  M R++QGDVGSGKT++A ++M    + G Q+ +M P  +LA QHYE
Sbjct: 262 VLDDIMSDMSRQTPMRRLIQGDVGSGKTVLAFLSMYNCAKNGYQSALMVPTEVLAIQHYE 321

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +     I VE++T ++    + K  ++I + +  ++IGT AL Q+ +Q+  L L+I
Sbjct: 322 SALNFFDGEDIRVELLTKSVKS--KEKIYQKIKNREVDVVIGTQALIQEKVQFSNLGLII 379

Query: 400 VDEQHRFGVQQRLKLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            DEQHRFGV QR +L QK+  P  V++M+ATPIPRTL L    D+DIS I E P  R  I
Sbjct: 380 TDEQHRFGVNQRKELEQKSEEPADVIVMSATPIPRTLSLVIHKDLDISVIDELPKNRVSI 439

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS- 517
           KT+       ++V + ++  +  G++AY +CP +EE ++ +  SV E    +   F    
Sbjct: 440 KTIAENKRNENKVFDFIQKQIRLGRQAYIVCPLVEENEDMDLISVDELHKKIQTIFDDDL 499

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA +HG+M   +KE ++  F      LLI+TTVIEVGI+V +ASI++I +A+ FGL+QL
Sbjct: 500 KIAKLHGKMKSSEKEELLKEFMENRINLLISTTVIEVGINVPNASIMVIYDAQRFGLSQL 559

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG++ S C+LLY    S  +  R+  + ++ DGF IA +DL+ R  GEI GI
Sbjct: 560 HQLRGRVGRGDKQSYCVLLYENA-SAITMERIKTIVSSNDGFEIARKDLELRGAGEIFGI 618

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
           KQ G+P+F +A    +  +LE+++K A+ +L     L   + ++IR+ LY
Sbjct: 619 KQHGLPEFHLADIIKNADILELSQKCAQEVLNT---LDDEKIKTIRLRLY 665


>gi|297626613|ref|YP_003688376.1| ATP-dependent DNA helicase RecG [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922378|emb|CBL56950.1| ATP-dependent DNA helicase RecG [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 735

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 207/646 (32%), Positives = 347/646 (53%), Gaps = 55/646 (8%)

Query: 43  DLLFYHPSSFIDRHYRPKI-SEISEERIVTITGYISQHSS-FQLQKRRPYKI--LLNDGT 98
           DL+ Y P  ++    R  + + + +ER   +    S  S+ F+   RR Y++   L DG 
Sbjct: 39  DLMHYTPRDYLSGTQRTDLRTLVPDERAAVVAEVASLSSAPFRGDPRR-YRLEARLTDGR 97

Query: 99  GEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-------- 148
           G + L+FF +K   +  +     G +    GKI +  +++ M HP ++  ++        
Sbjct: 98  GFLNLIFFGKKYLVDYWQRQLSMGERGIFVGKIGEFNDQLQMTHPDFVMLDAAGRIVGAA 157

Query: 149 --------QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200
                   Q V    I  +Y     L      + +   L  L  + +++   L++++   
Sbjct: 158 DEKRALMAQVVTKSDIIGIYPARATLPTWQIAECVAMGLDMLAGIVDFLPPSLVREEGLV 217

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG-IPINVEG 259
            + EAF+++H PR   D    +   +RL +DE L  Q+ +   RK+  +    +  +  G
Sbjct: 218 GLWEAFDLVHRPRVPDD---VARGLKRLKFDEALGLQLLMAYRRKESSRHRAPVITHRSG 274

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            +       +PF+ T+ Q +   +I  DMS    M R++QG+VGSGKT+VAL AM AAV+
Sbjct: 275 GLLDAFDAALPFTLTRGQRAVGDEIAADMSGSVPMARLVQGEVGSGKTVVALRAMLAAVD 334

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRK 366
           AG QAV++AP  +LA QH   I+K                 T ++  ++TG +  A R++
Sbjct: 335 AGHQAVLLAPTEVLAGQHEGSIRKLLGPLAAAGTLDAPEHATHLV--LLTGAVTGAARKQ 392

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLL 425
           AL  I+ GQA +++GTHAL  +++ +  + L++VDEQHRFGV+QR  L  +    PH L+
Sbjct: 393 ALAAISSGQAGLVVGTHALLSEAVHFSDIGLIVVDEQHRFGVEQRAVLADQGDHRPHQLV 452

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSE 481
           +TATPIPR++ +T  GD+++S ++E P GR  ++T  +   +    +  V +R+   +  
Sbjct: 453 LTATPIPRSVAMTVFGDLELSTLSELPQGRAGVQTTAVLTAQHPTWLARVWQRVLEEVQS 512

Query: 482 GKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           G++A+ +CP++ +          +  + V ER  S HE     + ++HGRMS  DKES M
Sbjct: 513 GRQAFVVCPRVSQTDGGKSAEPVAAAQEVFERLGS-HELKGLRLGLLHGRMSGADKESAM 571

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F  G   +L+ TTVIEVG+DV +AS +++ +A+ +G++QLHQLRGR+GRG     C+ 
Sbjct: 572 AAFAAGQTDVLVTTTVIEVGVDVPNASAMVVLDADRYGVSQLHQLRGRIGRGSFPGICLF 631

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           +        +  RL  +  T DGF +AE DL+QR+EG++LG +Q+G
Sbjct: 632 VSGVDPRTPAAQRLQQVAQTNDGFAVAELDLEQRREGDVLGAEQAG 677


>gi|226365976|ref|YP_002783759.1| ATP-dependent DNA helicase RecG [Rhodococcus opacus B4]
 gi|226244466|dbj|BAH54814.1| ATP-dependent DNA helicase RecG [Rhodococcus opacus B4]
          Length = 752

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 231/723 (31%), Positives = 374/723 (51%), Gaps = 90/723 (12%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99
           DLL ++P  +  +       +  E   +TI   ++  +  ++ K RP    K++L+  T 
Sbjct: 31  DLLRHYPHRYASQGRELAEKDPPEGEHITIIARVTSAAVVKM-KNRPGSMLKVVLSTDTQ 89

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF-----HNSQD--VN 152
            + + FF    + +K+V   G +   +G +K  + +  + HP Y+        S+D  VN
Sbjct: 90  NVDVTFF--SPQKVKHVIKPGVRAMFSGTVKYFRQKWSLTHPSYLILPEPRAGSEDPVVN 147

Query: 153 FPLIEAVYSLP----------TGLSVDLFKKI----------------------IVEALS 180
              I     L            G+ + +F +                       I++ L 
Sbjct: 148 VGRIRGAGDLAGIARASQEPGAGVDMSVFDRALIPLYPATRDVESWTIMKCVRQILDQLD 207

Query: 181 RLP-VLPEWI--EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           R+   LPE I  E+DL+       + EA   +H P   +D E    A +RL +DE  A Q
Sbjct: 208 RVDDPLPEKIRAERDLI------GLDEALRSVHLPDIREDVE---NAHDRLRFDEATALQ 258

Query: 238 IALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + L   R    + +      V G IA      +PF  T  Q +   +I  D+++ + M R
Sbjct: 259 LVLARRRHDNAERVAPACPPVPGGIADVFESMLPFQLTDGQHAVADEISADLARPHPMSR 318

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------T 345
           +LQG+VGSGKT+VAL AM   V+AG Q  ++AP  +LA QH   ++              
Sbjct: 319 LLQGEVGSGKTIVALRAMLQVVDAGYQCALLAPTEVLATQHARSLRAMLGSLATAGELGA 378

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
                 V ++TG+M  A +R A+     G A I+IGTHAL QD+++++ L +VIVDEQHR
Sbjct: 379 HEKATRVALLTGSMGVAAKRTAMNEAITGDAGIVIGTHALIQDNVEFFNLGMVIVDEQHR 438

Query: 406 FGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           FGV+QR +L  +A    +PH+L+MTATPIPRT+ +T LGD+++S + + P GR PIK+ +
Sbjct: 439 FGVEQRDRLRSRAREGLSPHLLVMTATPIPRTIAMTVLGDLEVSTLRQLPKGRSPIKSSV 498

Query: 463 IPINR----IDEVIERLKVVLSEGKKAYWICPQIEE-----------KKESNFRSVVERF 507
           +P ++    +    ER++  +++G++AY +C +I +           +K    +S V+ F
Sbjct: 499 VPASQKPQWVARAWERIREDVADGRQAYVVCSRIGDGEKGDGEDALDEKAPETKSAVDVF 558

Query: 508 NSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           + L     +   + ++HGR+   +K++VM  F  G   +L+ TTV+EVG+DV +A+I++I
Sbjct: 559 DELSGDIMADLRVGLLHGRLPADEKDAVMRDFTAGDIDVLVCTTVVEVGVDVPNATIMVI 618

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            +A+ FG++QLHQLRGRVGRG+    CIL+        +Y RLS + +T DGF +A+ DL
Sbjct: 619 VDADRFGVSQLHQLRGRVGRGKHQGLCILVTEMNPGGPAYERLSNVASTNDGFELAQLDL 678

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPEL-HDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
             R+EG+ILG  QSG    L     L H+ ++  A + A+ ++  DP L +  G S  + 
Sbjct: 679 ATRREGDILGAAQSGTTSTLRLLSLLGHEEVIAAASEFARAVIADDPRLENHPGLSAMVT 738

Query: 685 LYL 687
             L
Sbjct: 739 SAL 741


>gi|269794445|ref|YP_003313900.1| ATP-dependent DNA helicase RecG [Sanguibacter keddieii DSM 10542]
 gi|269096630|gb|ACZ21066.1| ATP-dependent DNA helicase RecG [Sanguibacter keddieii DSM 10542]
          Length = 758

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 230/706 (32%), Positives = 359/706 (50%), Gaps = 78/706 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100
           DLL ++P  + D     ++S +     VT+   +   +  +++ R     + +++DGT  
Sbjct: 35  DLLRHYPRRYADPGAMSQLSTLVVGEHVTVMAQVVSATVREMRSRGGAMLQAVVSDGTDR 94

Query: 101 ITLLFFYRKTEMLK---NVFFEGRKITVTGKIKKLKNRIIMVHPHYIF-----HNSQDVN 152
           ++L FF +    L+   +    GR    TG + + +N   + HP Y+       N  D  
Sbjct: 95  LSLTFFAKHPGALRTHESRLKPGRAGLFTGVVSEYRNERQLTHPDYLLPGVDVENEVDAL 154

Query: 153 FPLIEAVYSLPTGLSVDLFK--KIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNI 208
             +   +   P   S   +K  K + + L  L V  L + +  D+L +++   + +AF  
Sbjct: 155 LEVSRLMPIYPATASFASWKIHKCVRQVLDPLHVDDLADPVPADVLGRRNLVPLVQAFRD 214

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK-EIGIPINVEGKIAQKILR 267
           IH P    + EW    ++RL Y+E    Q AL L R +    E      VE      ILR
Sbjct: 215 IHLPES--ESEWHR-GQKRLRYEEAFVLQTALALRRSEAAALEATSRTLVED--GPSILR 269

Query: 268 N----IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +    +PF+ T  Q     +I  +++  + M R+LQG+VGSGKT+VAL AM   V+AGGQ
Sbjct: 270 DFDAALPFTLTTGQREVGDEIAAELAAPHPMQRLLQGEVGSGKTVVALRAMLQVVDAGGQ 329

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQII-----------VEIITGNMPQAHRRKALERIA 372
           A ++AP  +LA QH   +     +               V ++TG+ P A ++K L   A
Sbjct: 330 AALLAPTEVLAAQHARTLAALLGDLAAGGMLGGAAHGTRVALVTGSQPAAVKKKNLLDAA 389

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPI 431
            G A I++GTHAL    +Q+ +L LV+VDEQHRFGV+QR  L  KA T PH+L+MTATPI
Sbjct: 390 SGAAGIVVGTHALLSAGVQFAELGLVVVDEQHRFGVEQRDLLRAKARTVPHLLVMTATPI 449

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWI 488
           PRT+ +T  GD++ S + E PAGR  I T ++P  +   +     +++  +  G++AY +
Sbjct: 450 PRTVAMTVFGDLETSTLREIPAGRSGITTYVVPAQKPAWVSRTWAKVREEIDAGRQAYVV 509

Query: 489 CPQIEEKKESN-----------------------------------FRSVVE---RFNSL 510
           CP+I     S                                     R+V+E      +L
Sbjct: 510 CPRITGDDSSEDDATPALDPAALAGTDEDRDNPGGPAASAARSRTPLRAVLEVAAELAAL 569

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  I I+HG+M   +KE+ M +F  G   LL++TTVIEVG+DV  A+ +++ +A+ 
Sbjct: 570 EVFRGVRIGILHGQMPQAEKEAAMAAFTAGEVDLLVSTTVIEVGVDVPRATAMVVLDADR 629

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FGL+QLHQLRGRVGRG +   C L+     ++ + TRL+ L +T DGF +A  DL+ R E
Sbjct: 630 FGLSQLHQLRGRVGRGADAGICFLVSEMADAEPAKTRLTTLASTTDGFELAAADLEMRSE 689

Query: 631 GEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTS 675
           G++LG  QSG    L     + D+ ++E AR+DA  ++  DP L +
Sbjct: 690 GDVLGAAQSGRSTSLQLLRVVRDTAVIEQAREDAAAVVAVDPTLVT 735


>gi|254739526|ref|ZP_05197223.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Kruger B]
          Length = 432

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 171/396 (43%), Positives = 265/396 (66%), Gaps = 5/396 (1%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T +Q   + +I++DM+   RM R+LQGDVGSGKT+VA I + AA  A  Q  +M P 
Sbjct: 5   FPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMVPT 64

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA+QHY+ + +   +  + VE++T ++    RR+ L ++  G+  I++GTHAL QD +
Sbjct: 65  EILAEQHYQSLAETFSHFGMKVELLTSSVKGVRRREILAKLEQGEIDILVGTHALIQDEV 124

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +++L LVI DEQHRFGV QR  L +K  +P VL MTATPIPRTL +T+ G++D+S I E
Sbjct: 125 IFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDE 184

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            PAGRK I+T     + +D V+  ++  +++G++AY ICP IEE ++ + ++ ++  + L
Sbjct: 185 MPAGRKVIETYWAKHDMLDRVLGFVEKEINKGRQAYVICPLIEESEKLDVQNAIDLHSML 244

Query: 511 HEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
             H+     + ++HGR+S  +KE +M  F     ++L++TTV+EVG++V +A++++I +A
Sbjct: 245 THHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDA 304

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E FGL+QLHQLRGRVGRG E S C+L+  P  S+    R+ ++  T DGF+++E+DL+ R
Sbjct: 305 ERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELR 363

Query: 629 KEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDA 663
             G+  G KQSG+P+F +A   +HD   LE AR+DA
Sbjct: 364 GPGDFFGSKQSGLPEFKVADM-VHDYRALETARQDA 398


>gi|317125440|ref|YP_004099552.1| ATP-dependent DNA helicase RecG [Intrasporangium calvum DSM 43043]
 gi|315589528|gb|ADU48825.1| ATP-dependent DNA helicase RecG [Intrasporangium calvum DSM 43043]
          Length = 755

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 232/708 (32%), Positives = 361/708 (50%), Gaps = 100/708 (14%)

Query: 52  FIDRHYRP--KISEISEERI---VTITGYISQHSSFQLQKRRP--YKILLNDGTG-EITL 103
            + R Y P  +++++S  RI   V I   ++  ++  ++ RR     + L D  G ++ +
Sbjct: 37  LVPRKYLPPNELTDLSRLRIGENVLIIAEVAAATTRPMRNRRGKLLNVTLADEAGHQLDV 96

Query: 104 LFFYRKTEMLKNVFFEGRKIT------VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-- 155
            FF        N +   RK++        G+I     R+ + HP Y   + +D    +  
Sbjct: 97  TFF--------NAYGHERKLSPGVRGFFVGQIGTYGRRLQLTHPDYELIDDEDAAGEIEY 148

Query: 156 ----IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
                  VYS    L+    +K++ +AL  +  L E + +++  ++S P  AEA  ++H 
Sbjct: 149 YRTHWVPVYSTTGKLNAFRMRKLVHQALDTVDHLREPLPEEVRARRSLPGRAEALELVHR 208

Query: 212 PRKAKDFEWTSPAR--ERLAYDELLAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRN 268
           P   +      P R   RL YDE    Q  L   RK  +  +G P     G +       
Sbjct: 209 PPLTE-----RPDRGIRRLKYDEAFVLQSILAQRRKASEALVGTPRRPRPGGLLAAFDER 263

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF  T+ Q    + +L+++ ++  M R+LQG+VGSGKT+VAL AM AAV+AGGQA ++A
Sbjct: 264 LPFELTEGQRLVGEVLLEELGRERPMHRLLQGEVGSGKTVVALRAMLAAVDAGGQAAMLA 323

Query: 329 PIGILAQQHYEFIKKYTQNTQI-----------IVEIITGNMPQAHRRKALERIAHGQAH 377
           P  +LA QH+  I +   +  +            V ++TG+   A RR AL   A G A 
Sbjct: 324 PTEVLAAQHHRSISEMLGDLAMGGMLGGSDRGTKVALLTGSQSTAARRSALLDAASGAAG 383

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLV 436
           I+IGTHAL Q  +Q+  L LV+VDEQHRFGV+QR  L +K  A PHVL+MTATPIPRT+ 
Sbjct: 384 IVIGTHALIQKHVQFADLALVVVDEQHRFGVEQRDALREKGAAPPHVLVMTATPIPRTVA 443

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQI- 492
           +T  GD++ S + E P GR PI T ++  +R   +    ER+   +++G +AY +CP+I 
Sbjct: 444 MTVFGDMETSTLRELPRGRSPIATHVVKADRAGWMQRTWERVAEEVAKGHQAYVVCPRIG 503

Query: 493 ------------EEKKESNFRSVVERFNSLHEHFTSS----------------------- 517
                        E+  +++  V        E   SS                       
Sbjct: 504 DPDPGSRLSSDSSEEDAADWEPVDWAEVDWSEDAWSSEEEPAPPPAPELTGVYAMWHELR 563

Query: 518 ---------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                     A++HGR+   +KE+ M +F  G   +L+ATTVIEVG+DV +AS++++ +A
Sbjct: 564 AKPELAGVRTAVLHGRLETDEKEATMRAFAAGEIDVLVATTVIEVGVDVPNASVMVVVDA 623

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           + FG++QLHQLRGRVGRG     C+L+   P  + +  RL ++  T DGF +A  DL  R
Sbjct: 624 DRFGISQLHQLRGRVGRGSVPGLCLLVTTDP-GERAVERLDLVAGTTDGFELARADLHFR 682

Query: 629 KEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           +EG++LG +QSG     + L       + ++  AR+DA  ++  DPDL
Sbjct: 683 REGDVLGARQSGRSGSIRHLRLTRAEDEQIIADAREDAFALIDTDPDL 730


>gi|195953636|ref|YP_002121926.1| ATP-dependent DNA helicase RecG [Hydrogenobaculum sp. Y04AAS1]
 gi|195933248|gb|ACG57948.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 798

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 234/675 (34%), Positives = 370/675 (54%), Gaps = 57/675 (8%)

Query: 29  KIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR 88
           KI++    N    ID+L+Y P ++ +R     IS ++ +   T+   I ++  +  +++ 
Sbjct: 110 KILHASGLN--TLIDVLWYFPYTYENRLVLKSISSLALDSYGTVLVKI-ENLIYDEKEKF 166

Query: 89  PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS 148
           P+ I+  DG  ++ L F   K + +   + +G+ I V G +K+ + +  M+HP     +S
Sbjct: 167 PFSIIAADGKSKLVLKF-RAKDKSVMGWYQKGQNIVVYGMLKEFRGQKYMIHPKIFSESS 225

Query: 149 QDVNFPLIEAVYSL-----PTGL---SVDLFKKIIVEALSRL------------PVLPEW 188
           ++++  +I+ VY L     P  +   S    +K++  ++  +             +LPE 
Sbjct: 226 KEID--IIKPVYPLERFEDPQSILASSSQKRRKLLESSIKSILNYYKDYWQNLQDILPE- 282

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244
              + L+      ++ AF IIH     KDF       S A++R  Y+E+   ++A+L  R
Sbjct: 283 ---EFLKDNDLIPLSTAFKIIHAEDYFKDFRSFESMLSKAKKRFLYEEIFIFELAML-KR 338

Query: 245 KQFKKEIGIP-INVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +   K +  P IN + + I +++  +I F  T +Q+ AI +I+ DM     M R+LQGDV
Sbjct: 339 RSLVKSLNAPSINADPESIIKEVQSHISFPLTNAQKRAITEIINDMRSTKPMSRLLQGDV 398

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLV + +  A ++ G QA +M P  ILA QHY+    +       V ++T +  + 
Sbjct: 399 GSGKTLVGISSALAVLKDGFQAAVMVPTEILANQHYKNFHDFFSKLGYRVGLLTSSTSKT 458

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--A 420
              K    I+ G+ +I+IGTHAL Q+ +++  L   IVDEQHRFGV QR  L +K     
Sbjct: 459 DIHKL---ISIGEINIVIGTHALVQEKVKFKNLGFAIVDEQHRFGVAQRQILLEKNNNLM 515

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT-VIIPINRIDE--VIERLKV 477
           PH+L M+ATPIPRT+ +   GD+DIS + E PA RKP+KT V+   N+ D   +IE +K 
Sbjct: 516 PHMLYMSATPIPRTIAMGIFGDLDISVLDEMPAMRKPVKTSVLYSDNQKDMAFLIEHIKK 575

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            LS G K Y + P IEE ++ + ++    +      F    + ++HGRMSD +K  VM+ 
Sbjct: 576 ELSNGNKVYIVYPLIEESEKLDLKAAQTEYEKWKNIFKDYKVLLLHGRMSDKEKSKVMEE 635

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK  +  +L++TTVIEVGIDV +AS I+IE+A  FGL+QLHQLRGRVGRG++   C LL 
Sbjct: 636 FKE-SGHILVSTTVIEVGIDVKEASTIVIEDAYRFGLSQLHQLRGRVGRGDKEGYCFLLV 694

Query: 597 HPPLSKN--------SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA- 647
           +    K+        +  RL ++  T +GF I+ EDLK R  G++LG+ QSG   F  A 
Sbjct: 695 NSSFVKSQKLTEQNATLQRLRIMVKTRNGFEISLEDLKLRGPGDVLGLSQSGYFGFNFAN 754

Query: 648 -QPELHDSLLEIARK 661
            + E H  L+   R+
Sbjct: 755 LKNEEHLRLMSTIRE 769


>gi|319796409|ref|YP_004158049.1| ATP-dependent DNA helicase recg [Variovorax paradoxus EPS]
 gi|315598872|gb|ADU39938.1| ATP-dependent DNA helicase RecG [Variovorax paradoxus EPS]
          Length = 708

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 226/659 (34%), Positives = 360/659 (54%), Gaps = 32/659 (4%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           R ID   Y P  + D     K+++  +  +  + G +++      + RR     ++DG+ 
Sbjct: 41  RDIDFALYLPMRYEDETRIVKLADTRDGDMAQVEGVVTE-CEVVYRPRRQLIATIDDGSD 99

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKK-LKNRIIMVHPHYIFHNSQDVNFP-LIE 157
              L FF       K +   G ++ V G+++     R IM HP      +   + P  + 
Sbjct: 100 TCQLRFFNFYPSQQKQLAV-GARVRVRGEMRGGFVGRQIM-HPTV---KAAGTSLPEALT 154

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK--- 214
            VYS   GL+  + ++ +   L+R  VL E I   +    ++  +  +   +H P     
Sbjct: 155 PVYSTVAGLAQPVLRREVRSGLARA-VLDETIPVQIGLGGAW-DLRSSLTFLHYPTPDVA 212

Query: 215 -AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG-----IPINVEGKIAQKILRN 268
            A   + + PA +R+  +ELLA Q++ L  R +   +        P  V   +  ++L  
Sbjct: 213 MATLEDHSHPAWQRIKAEELLAQQLSQLQARMERAAQRAPVLPSSPEPVATSLHAQLLAV 272

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF  T +Q+   ++I +D+ ++  M R+LQGDVGSGKT+VA +A A A++AG Q  +MA
Sbjct: 273 LPFGLTGAQQRVGEEITRDLGREIPMHRLLQGDVGSGKTVVAALAAARAIDAGFQCALMA 332

Query: 329 PIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           P  ILA QH+     ++        + V  +TG+  +  R      +  G+A ++IGTHA
Sbjct: 333 PTEILAAQHFGKLVGWLDPLLAERGLRVAWLTGSQKKKERDAMSAAVESGEAALVIGTHA 392

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLG 441
           +  + +++  L L I+DEQHRFGV QRL L  KA     PH+L+M+ATPIPRTL ++   
Sbjct: 393 VISEKVRFKNLALAIIDEQHRFGVAQRLALRGKAVGHLEPHLLMMSATPIPRTLAMSYYA 452

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           D+D+S + E P GR PI T ++  +R DEVI+R++  +++G++ YW+CP IEE +  + R
Sbjct: 453 DLDVSTLDELPPGRTPIVTKLVADHRRDEVIDRIQAQIAQGRQVYWVCPLIEESEAVDLR 512

Query: 502 SVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           +  E  + L      ++   ++H RM   +K++VM +F     ++L++TTVIEVG+DV +
Sbjct: 513 NATETRDELAGTLGEAVHVGLLHSRMPTAEKQAVMAAFTANEIQVLVSTTVIEVGVDVPN 572

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTE 615
           AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY P     + + +  RL  +  T 
Sbjct: 573 ASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYAPGDSGRVGEAARARLKAMAETG 632

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           DGF IA  DL+ R  GE LG +QSG P    A       LL+ AR+ A  +L + PDL 
Sbjct: 633 DGFEIARRDLEIRGPGEFLGARQSGAPLLRFADLTTDTLLLDWARELAPVMLEKHPDLA 691


>gi|330466258|ref|YP_004404001.1| ATP-dependent DNA helicase RecG [Verrucosispora maris AB-18-032]
 gi|328809229|gb|AEB43401.1| ATP-dependent DNA helicase RecG [Verrucosispora maris AB-18-032]
          Length = 734

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 224/707 (31%), Positives = 364/707 (51%), Gaps = 63/707 (8%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           VG+K +  L+  ++   A      DL+++ P  + +R     I  +     VT+   + +
Sbjct: 16  VGEKTAKALAGHLDLHTAG-----DLMYHFPRRYDERGEHTDIRALDVGEQVTVLAQVQR 70

Query: 79  HSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
            +   +++RR    ++ + DG+G    L F+      +     GR     GK+   + + 
Sbjct: 71  TAVRPMRQRRGNLLEVTVGDGSGGTLTLTFFGNQAWRERELRPGRWGLFAGKVTDFRGKR 130

Query: 137 IMVHPHYIFHNSQDVN---------------FPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
            +  P Y+    +                   P+  A  ++PT +     + ++      
Sbjct: 131 QLNGPEYVLLGDRTDGEAAATEQIEEFAGALIPVYPAAAAVPTWVIARCVRVVLDTVAPP 190

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              LP     D+   ++   +  A   IH P   ++      AR RL +DE  A Q+ L+
Sbjct: 191 EDPLP----ADVRASRNLVGLGGALREIHRPSSREEL---YRARRRLKWDEAFAVQLTLV 243

Query: 242 LMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             + Q             G +       +P+  T  Q     +I  D+++++ M R+LQG
Sbjct: 244 RRKHQAAASPARARPARAGGLLDAFDARLPYELTGGQRDVGAEIAADLARRHPMHRLLQG 303

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQII----- 351
           +VGSGKT+VAL AM   V+AGGQA ++AP  +LA QHY    + +    Q  ++      
Sbjct: 304 EVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHYRGMLDLLGPLAQAGELGAAEHA 363

Query: 352 --VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
             VE++TG++  A RR+AL  +A G A I++GTHAL  + + +  L LV+VDEQHRFGV+
Sbjct: 364 TRVELVTGSLGAAARRRALAEVASGAAGIVLGTHALLYEGVDFADLGLVVVDEQHRFGVE 423

Query: 410 QRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           QR  L  KA   PHVL+MTATPIPRT+ +T  GD++IS +++ P GR PI + ++P    
Sbjct: 424 QRDALRAKAEQPPHVLVMTATPIPRTVAMTVYGDLEISTLSQLPRGRSPIASHVVPAAEK 483

Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQIEEK-----------KESNFR---SVVERFNSL 510
              +D    RL+  ++ G +AY +CP+I +             ++  R   +V E    L
Sbjct: 484 PAFLDRAWRRLREEVANGHQAYVVCPRIGDSTTGAEEEPPAVDDTGRRPPLAVTEVAPLL 543

Query: 511 HEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            +       I ++HGR+   +K++VM SF NG   +L+ATTV+EVG+DV +A+++++ +A
Sbjct: 544 ADGPLHGLRIGVLHGRLPADEKDAVMRSFANGELDVLVATTVVEVGVDVPNATMMVVLDA 603

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           + FG++QLHQLRGRVGRG     C+L+       ++  RL  + +T DGF +AE DL+QR
Sbjct: 604 DRFGVSQLHQLRGRVGRGSAPGLCLLVTEATEGTSARERLDAVASTTDGFKLAELDLEQR 663

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLT 674
           +EG++LG  QSG    L     L D+ L+  AR +A  ++ +DPDLT
Sbjct: 664 REGDVLGAAQSGRRSHLRLLSLLRDADLIRDARAEAITLVEEDPDLT 710


>gi|289450213|ref|YP_003474687.1| ATP-dependent DNA helicase RecG [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184760|gb|ADC91185.1| ATP-dependent DNA helicase RecG [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 718

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 230/692 (33%), Positives = 368/692 (53%), Gaps = 58/692 (8%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++   GV  K +  ++++    N N  R  DLL Y P  + D      +++I  E+ VT+
Sbjct: 23  VTQLAGVSAKRAALMARL----NINTCR--DLLNYWPRRYEDWATLSTLADIEPEQEVTV 76

Query: 73  TGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFF---YRKTEML--KNVFFEGRKITVT 126
                     Q + +  Y ++ L D + ++ +++F   Y +T++   K   F G   T++
Sbjct: 77  LARCITMPHLQYKGKLSYLRVGLADASDQLGVIWFNQPYLETQLDIDKVYLFHG---TIS 133

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPL------------IEAVYSLPTGLSVDLFKKI 174
                 KNR + +         +    PL            I  VY L  GL+  + + +
Sbjct: 134 ------KNRPLSLQNPAFTPVPELAEAPLNTIKPSALANTFIRPVYPLTAGLTQGVLRNL 187

Query: 175 IVEALSRLPVLPEWIEKD------LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
           I + L+    + E +E++      + Q++   +   A   IH P   +D+   + ARERL
Sbjct: 188 IRQCLT---AMREQLEREDYLPLKMRQRQHLTTYVYAVEHIHFPTCLEDY---TIARERL 241

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA----QKILRNIPFSPTKSQESAIKDI 284
            ++EL   Q+ L L++K+       PI    K A    Q ++  +P+  TK+Q +A++DI
Sbjct: 242 VFEELFFMQLGLQLLKKRRLNGQTAPIINLDKTAETKYQAVVNALPYRLTKAQIAALQDI 301

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
             D++    M R++QGDVGSGKT+VA +A+   V AG Q ++MAP GILA+QHY  I   
Sbjct: 302 STDLAVGIPMDRLVQGDVGSGKTIVAALALYRTVLAGYQGLLMAPTGILAEQHYNNISSL 361

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                I V ++TG    A +R+  + ++ G+  ++IGT A+  D++Q     LV+ DEQH
Sbjct: 362 LTPYGIKVALLTGKTKGAAKRQITQALSTGEIDLLIGTQAILNDNLQMLHPGLVVTDEQH 421

Query: 405 RFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           RFGV QRL +   Q    PHVL+M+ATPIPR+L L   GD+ IS I E P GR PIKT  
Sbjct: 422 RFGVNQRLAMIKRQDEQRPHVLVMSATPIPRSLALVLYGDLSISIIDELPPGRLPIKTYT 481

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF----NSLHEHFTSSI 518
           +    ++     +  +L  G++AY ICP   +   S   +  E      N +   FT  I
Sbjct: 482 VGSADLERAYALIHKLLRLGQQAYVICPLKADTGHSESFAATELGEELKNKVFPEFT--I 539

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++HG M + +K++VM  FKNG   +L++TTV+EVG+D  +A+++++ NAE FGLAQLHQ
Sbjct: 540 GLLHGAMKENEKQTVMADFKNGKINILVSTTVVEVGVDNPNATVLLVMNAERFGLAQLHQ 599

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG+  S C LL+       +  RL  + ++ DG+ +AE DL+ R  G+  G++Q
Sbjct: 600 LRGRVGRGKLQSYC-LLHSDRQQGTARERLVQMCHSNDGYQLAEADLRLRGPGDFFGVRQ 658

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            G+P+F +A       +L  A ++ + IL +D
Sbjct: 659 HGLPEFKLANLYEDAGILARAGREVQQILAED 690


>gi|309798694|ref|ZP_07692959.1| ATP-dependent DNA helicase RecG [Streptococcus infantis SK1302]
 gi|308117637|gb|EFO55048.1| ATP-dependent DNA helicase RecG [Streptococcus infantis SK1302]
          Length = 392

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 168/368 (45%), Positives = 253/368 (68%), Gaps = 5/368 (1%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF+ T++QE ++++IL DM     M R+LQGDVGSGKT+VA +AM AAV AG QA +M 
Sbjct: 1   MPFALTQAQEKSLQEILTDMKSDQHMNRLLQGDVGSGKTVVAGLAMYAAVTAGYQAALMV 60

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QH+E ++    + ++   ++TG++  A +R  LE IA G+  +I+GTHAL QD
Sbjct: 61  PTEILAEQHFESLESLFPDLKL--ALLTGSLKAAEKRTVLETIAKGEVDVIVGTHALIQD 118

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++Y +L L+I+DEQHRFGV QR  L +K   P VL+MTATPIPRTL +T+ GD+D+S I
Sbjct: 119 GVEYARLGLIIIDEQHRFGVGQRRILREKGENPDVLMMTATPIPRTLAITAFGDMDVSII 178

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            + PAGRKPI T  I   ++ +V+  L+  + +G +AY I P IEE +  + ++ +    
Sbjct: 179 DQMPAGRKPIVTRWIKHEQLPQVLTWLESEIQKGSQAYVISPLIEESEALDLKNAIALSE 238

Query: 509 SLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            L  HF   + +A++HG+M   +K+ +M  FK     +L++TTVIEVG++V +A+++II 
Sbjct: 239 ELTAHFAEKAKVALLHGKMKSDEKDQIMQEFKERKTDILVSTTVIEVGVNVPNATVMIIM 298

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +   R+ ++  T +GF++AEEDLK
Sbjct: 299 DADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDSGKDRMRIMTETTNGFVLAEEDLK 357

Query: 627 QRKEGEIL 634
            R  GEIL
Sbjct: 358 MRGSGEIL 365


>gi|55981235|ref|YP_144532.1| ATP-dependent DNA helicase RecG [Thermus thermophilus HB8]
 gi|55772648|dbj|BAD71089.1| DNA helicase RecG [Thermus thermophilus HB8]
          Length = 770

 Score =  337 bits (863), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 217/638 (34%), Positives = 347/638 (54%), Gaps = 19/638 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGE 100
           D+L ++P  + DR   P    + E +  T+   +      +  ++  +  ++   D  G 
Sbjct: 120 DVLHHYPRRYEDRRALPGARYLEEGQKATLAVKVLAKELVKTPRKGMQLVQVKAQDAWGW 179

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
              L ++ +  +L  +  EG  + VTG++ + +N + +   H+    ++ ++   I  +Y
Sbjct: 180 RITLVWFNQPWVLSQIE-EGATLIVTGRVGR-RNGLQLYVEHFEDEGTESLSTGRIVPIY 237

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIE---KDLLQKKSFPSIAEAFNIIHNPRKAKD 217
               G+S    ++ +  AL     LP+ +E   +DL         AEA   IH P   +D
Sbjct: 238 PAKEGVSQAFLRRTVHRALELALPLPDPLEAYREDL----GLMPYAEALKAIHFP---ED 290

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            E    A  RL +DE L  ++  LL        +G    VE    +   + +PF  T++Q
Sbjct: 291 EEALKRALLRLKFDEYLLLELKALLEAGGMV--LGRSFRVEEAWVEAFKKALPFPLTRAQ 348

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           E  + +I +DM    +M R+LQGDVGSGKT+VA  A+  A + G Q  +MAP  ILA+QH
Sbjct: 349 ERVMGEIAKDMQSPRQMARLLQGDVGSGKTVVAAFALFLAAKNGAQGALMAPTEILARQH 408

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+ + +Y     I VE++ G+M    +  A+ R+  G+A + +GTHAL Q+ + +  L L
Sbjct: 409 YQNLTRYLFPLGIRVELLLGSMTAKEKEAAMARLLSGEAQVAVGTHALIQEGVGFRDLGL 468

Query: 398 VIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            +VDE+HRFGV QR  L + A A P VL+M+ATPIPR+L LT  GD+++S + E P GR 
Sbjct: 469 AVVDEEHRFGVLQRRALLKLAKAPPDVLVMSATPIPRSLALTLYGDLEVSVLDEMPPGRV 528

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           P+KT ++P     +     +  + +G + + + P IEE +E + ++    +  L      
Sbjct: 529 PVKTKVLPHRLRLQAYAFAREEVRKGHQVFVVAPAIEESEELDLKAATTLYEELKGLLPG 588

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +A++HGRM   +K+ VM++F+ G   LL++TTV+EVG+D+  A++II+ENAE FGLAQ
Sbjct: 589 VRLALLHGRMPAREKDEVMEAFRRGDYDLLVSTTVVEVGVDIPKATLIIVENAERFGLAQ 648

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG  +    +       + +  RL +L+ + DGF IAE DLK R  GE+ G
Sbjct: 649 LHQLRGRVGRG-GLEGYAVFIAGEAGQKTLKRLKILEESTDGFYIAEMDLKLRGPGELRG 707

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            +QSG P+  +        ++E AR  AK I+ +DP L
Sbjct: 708 TRQSGYPELKLGDLAEDTGIIEKARALAKAIVDKDPTL 745


>gi|296127094|ref|YP_003634346.1| DEAD/DEAH box helicase domain protein [Brachyspira murdochii DSM
           12563]
 gi|296018910|gb|ADG72147.1| DEAD/DEAH box helicase domain protein [Brachyspira murdochii DSM
           12563]
          Length = 696

 Score =  336 bits (862), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 237/698 (33%), Positives = 363/698 (52%), Gaps = 55/698 (7%)

Query: 17  RGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74
           +GVG KY+  L+K  II           DL+ + P  + DR    K+ E  E +  T   
Sbjct: 19  KGVGPKYAEILAKKGIIT--------LYDLIAFFPRDYDDRRKTLKLHEALENKEKTSVV 70

Query: 75  YIS--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK-IKK 131
           Y+     SSF  Q +    +++ DG     +  +  +   L     +G K+ +TGK ++ 
Sbjct: 71  YVEVLDISSFNFQYKNKPLVIVTDGAAICEVPIYGGR---LPAGVAKGAKLYLTGKFVRG 127

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-----LP 186
            + ++      +   +S  +++  I  +Y L  GLS    + +IV+ L          +P
Sbjct: 128 NRGKLQCRMTEFEKPSSNALSYGKIVPIYPLTEGLSQKKLRTLIVDELEVFEKNMKYDIP 187

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
             I+K    K    SI E    +H P     FE    ARE L ++E L  Q   L  R+ 
Sbjct: 188 NMIKKKYRLKSFVSSIIE----MHFP---TSFEALDEARESLIFEEFLTFQYIHLSERRP 240

Query: 247 FKKEIGIPINVE----GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
                 I I  E      + +K+   +PF  T+ Q +AI++I  D+  K +M R+LQGDV
Sbjct: 241 -----NILIKDERYNSSTMLEKVKSALPFELTEDQLNAIEEIKNDLFSKKQMFRLLQGDV 295

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ----NTQIIVEIITGN 358
           G+GKT+VA +      E+G Q   +AP  ILA QHY   KK  +       I ++I+T +
Sbjct: 296 GAGKTIVAFLTALIPAESGFQTAFLAPTEILALQHYNTFKKLIKLAGLEDTIKIDILTSS 355

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           + Q+ R   L+R+  G+++I++GTH++  D + +  L   IVDEQ RFGV QR KL  K 
Sbjct: 356 VSQSERGYLLKRLREGKSNILVGTHSIIYDEVIFKNLSYAIVDEQQRFGVAQRNKLLSKG 415

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                LLMTATPIP++L LT  G++D+S I   P+ RK + T    +   D   + LK  
Sbjct: 416 KNVDYLLMTATPIPQSLALTLFGELDLSIIKTLPSSRKGVLTKYKELYERDHCYKFLKNR 475

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDS 536
           +S+G++ Y + P IE   +S+F ++   F    E + S   I IIHG+M D +KE +M+ 
Sbjct: 476 ISKGEQGYVVFPLIE-NNDSSFITLSSEFQRAKETYFSDTQIEIIHGKMKDEEKEYIMNR 534

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G  K+L +TTVIEVGID  +A+ I+IE AE FGL+QLHQLRGRVGRG+++  C L+ 
Sbjct: 535 FASGEIKVLFSTTVIEVGIDNPNATTILIEGAERFGLSQLHQLRGRVGRGDKLGYCYLIL 594

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H  L+     R++++  T DGF I+E+DL+ R  GE LG KQSG+P F +        ++
Sbjct: 595 HSELNDIIKERINIICETTDGFKISEKDLELRGAGEFLGDKQSGLPDFKLGNIIKDKEIM 654

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
             A+ + + +L  +    +            Y+ NEAF
Sbjct: 655 RKAKDEMRSLLKDEISKET-----------FYRENEAF 681


>gi|46199206|ref|YP_004873.1| DNA helicase recG [Thermus thermophilus HB27]
 gi|46196831|gb|AAS81246.1| DNA helicase recG [Thermus thermophilus HB27]
          Length = 770

 Score =  336 bits (862), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 218/638 (34%), Positives = 347/638 (54%), Gaps = 19/638 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGE 100
           D+L ++P  + DR   P    + E +  T+   +      +  ++  +  ++   D  G 
Sbjct: 120 DVLHHYPRRYEDRRTLPGARYLEEGQKATLAVKVLAKELVKTPRKGMQLVQVKAQDAWGW 179

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
              L ++ +  +L  +  EG  + VTG++ + +N + +   H+    ++ ++   I  +Y
Sbjct: 180 RITLVWFNQPWVLSQIE-EGATLIVTGRVGR-RNGLQLYVEHFEDEGTESLSTGRIVPIY 237

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIE---KDLLQKKSFPSIAEAFNIIHNPRKAKD 217
               G+S    ++ +  AL     LP+ +E   +DL         AEA   IH P   +D
Sbjct: 238 PAKEGVSQAFLRRTVHRALELALPLPDPLEAYREDL----GLMPYAEALKAIHFP---ED 290

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            E    A  RL +DE L  ++  LL        +G    VE    +   + +PF  T++Q
Sbjct: 291 EEALKRALLRLKFDEYLLLELKALLEAGGMV--LGRSFRVEEAWVEAFKKALPFPLTRAQ 348

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           E  + +I +DM    +M R+LQGDVGSGKT+VA  A+  A + G Q  +MAP  ILA+QH
Sbjct: 349 ERVMGEIAKDMQSPRQMARLLQGDVGSGKTVVAAFALFLAAKNGAQGALMAPTEILARQH 408

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+ + +Y     I VE++ G+M    +  A+ R+  G+A + +GTHAL Q+ + +  L L
Sbjct: 409 YQNLTRYLFPLGIRVELLLGSMTAKEKEAAMARLLSGEAQVAVGTHALIQEGVGFRDLGL 468

Query: 398 VIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            +VDE+HRFGV QR  L + A A P VL+M+ATPIPR+L LT  GD+++S + E P GR 
Sbjct: 469 AVVDEEHRFGVLQRRALLKLAKAPPDVLVMSATPIPRSLALTLYGDLEVSVLDEMPPGRV 528

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           P+KT ++P     +     +  + +G + + + P IEE +E + ++    +  L      
Sbjct: 529 PVKTKVLPHRLRLQAYAFAREEVRKGHQVFVVAPAIEESEELDLKAATTLYEELKGLLPG 588

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +A++HGRM   +K+ VM++F+ G   LL++TTV+EVG+D+  A++II+ENAE FGLAQ
Sbjct: 589 VRLALLHGRMPAREKDEVMEAFRRGDYDLLVSTTVVEVGVDIPKATLIIVENAERFGLAQ 648

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG      I +      + +  RL +L+ + DGF IAE DLK R  GE+ G
Sbjct: 649 LHQLRGRVGRGGLQGYAIFIAGEA-GQKTLKRLKILEESTDGFYIAEMDLKLRGPGELRG 707

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            +QSG P+  +        ++E AR  AK I+ +DP L
Sbjct: 708 TRQSGYPELKLGDLAEDTGIIEKARALAKAIVDKDPTL 745


>gi|315651226|ref|ZP_07904256.1| DNA helicase RecG [Eubacterium saburreum DSM 3986]
 gi|315486522|gb|EFU76874.1| DNA helicase RecG [Eubacterium saburreum DSM 3986]
          Length = 687

 Score =  336 bits (862), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 221/671 (32%), Positives = 365/671 (54%), Gaps = 36/671 (5%)

Query: 13  LSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRP--KISEI----S 65
           +   +GVG K + +L K+ I   N       DLL ++P  +++  Y+P  KIS+I    +
Sbjct: 6   VKNIKGVGAKTAQYLDKLGIRTVN-------DLLKHYPVRYLE--YKPPTKISDIKKDDN 56

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
            +  V I   +++  +F    ++     L D    I ++++   +  L     +G     
Sbjct: 57  RDEDVVIKATVTKSPAFVGSNKKVLTTKLTDYIDVIDVIWY--NSAYLSVTLRQGESYIF 114

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            GK+ + +++  + HP        +      + VY L  G+S +  +K+I  A   +P +
Sbjct: 115 VGKMSR-RSKNTLEHPAIYTVEEYEKKIGGYKPVYGLTAGISNNTMEKLIKVAFEYIPKM 173

Query: 186 P--EWIEKDLLQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLL 242
              E++ + +++K S      A   IH P  K   F+    A+ RL++D+       + L
Sbjct: 174 DFKEYLPQYIIKKNSLADRESAVRNIHCPMNKTALFD----AKRRLSFDDFFRFLYGIRL 229

Query: 243 MR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           ++ K+ + +    I  +     +I   +PF  T SQ+  I++IL DMS      R+LQGD
Sbjct: 230 LKDKRLRIKTKNIIADDKNTLDEIKSVLPFKLTASQDDVIEEILHDMSSGIVTNRLLQGD 289

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVEIITG 357
           VGSGKT+VALI +  AV++G Q V+M P  +LA+QH+    + + K  +   +   I+TG
Sbjct: 290 VGSGKTVVALICLYMAVKSGFQGVVMVPTEVLAKQHFKSMFDILSKLDKPPNL--GILTG 347

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           +M +       E+I  G+  I+IGTHAL  +++++  L LV+ DEQHRFGV+QR  L+ K
Sbjct: 348 SMTKKEHLLMYEKIESGEIDILIGTHALLVENVKFKNLGLVVTDEQHRFGVRQRSTLSGK 407

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
               HV++M+ATPIPRTL +   GD+DIS I  KP GR P+K  +I     ++    + +
Sbjct: 408 GENVHVIVMSATPIPRTLAIILYGDLDISTIESKPVGRLPVKNAVITEKDREKAYRHILL 467

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMD 535
            + +G +AY ICP +E+ +     +V++    + + F+ +  + ++HG+M   +K+ +M 
Sbjct: 468 EVKKGHQAYIICPMVEDSENIEAENVLDYGKKIADKFSQNCKVEVLHGQMHQKEKDDIML 527

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            + N    +L+ATTVIEVG+DV +A++I+IENAE FGLA LHQLRGRVGR   + S  + 
Sbjct: 528 RYINKEIDILVATTVIEVGVDVPNATVIMIENAERFGLATLHQLRGRVGRS-ALQSYAIF 586

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
                SK +  RL ++ N+ DGF IA +DL  R  GE+ G+ QSG P F IA     + +
Sbjct: 587 VRTSNSKLAKKRLEIIGNSNDGFYIASKDLALRGPGELFGLAQSGEPDFGIADIYNDNDV 646

Query: 656 LEIARKDAKHI 666
            ++A++ A  I
Sbjct: 647 FDMAKEAADMI 657


>gi|256824929|ref|YP_003148889.1| RecG-like helicase [Kytococcus sedentarius DSM 20547]
 gi|256688322|gb|ACV06124.1| RecG-like helicase [Kytococcus sedentarius DSM 20547]
          Length = 741

 Score =  336 bits (862), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 216/700 (30%), Positives = 355/700 (50%), Gaps = 77/700 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYI--SQHSSFQLQKRRPYKIL-LNDGTG 99
           DL+ + P+ ++D      ++++   +   + G +  +Q    + Q RR   +  + DG G
Sbjct: 31  DLVQFVPTRYLDPDRPEAMADLVVGQSAVVVGEVVSAQQLPLRNQPRRKRLVASVQDGAG 90

Query: 100 ---EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN---- 152
              E+T    Y   + L      G ++   G + + K  + M HP Y+    +       
Sbjct: 91  SRLEVTFFSTYGHADRL----VPGARVMFIGTVGEFKRTLQMTHPDYVVLTGRGEVAGAA 146

Query: 153 -------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAE 204
                    L   V  + T L V+    + + AL   P V+P  +    +      ++ E
Sbjct: 147 AGPGEGLIGLYREVKGM-TSLQVNTAAVLALHALDEAPDVVPPGVSVHGVTGHDLTAL-E 204

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQ 263
           A++ +H P    D+   +  R RL   E    Q+ L  +R + + +   P    EG +A 
Sbjct: 205 AWSALHRP---ADWSEVARGRNRLRLAEAFELQVVLARLRARHEADPATPRPRAEGGVAG 261

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +    +PF+ T +QE   ++I  ++ + + M R+LQGDVGSGKT+VAL AM  AV++GGQ
Sbjct: 262 RFDAALPFALTGAQERVGREIAAELERTHPMHRLLQGDVGSGKTMVALRAMLQAVDSGGQ 321

Query: 324 AVIMAPIGILAQQHYEFIKKYTQN--------TQIIVEIITGNMPQAHRRKALERIAHGQ 375
           A ++AP  ILA QH+  + +   +          + + ++TG+M QA R+K L     G+
Sbjct: 322 AALLAPTEILATQHHRGLVRTLGDLATAGRLAGGVEIRLLTGSMTQAQRQKVLLDTLTGE 381

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRT 434
             I++GTHAL QD++ +  L LV++DEQHRFGV+QR  L  KA   PH+L+MTATPIPRT
Sbjct: 382 VDILVGTHALLQDTVGFADLALVVIDEQHRFGVEQRDALRAKADPPPHLLVMTATPIPRT 441

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWIC-- 489
           + +T  GD+D+S + E PAGR+P+ T ++P      ++   ER+   ++ G++A+ +   
Sbjct: 442 VAMTVFGDMDVSVLDELPAGRQPVTTHVVPAGNATWVERAWERIAEEVAAGRQAFVVASR 501

Query: 490 -------------------------------PQIEEKKESNFRSVVERFNSLHEHFTS-- 516
                                          P  +E+       V +   +  EH     
Sbjct: 502 IDAADDPEDAPGGGAAGSQSGSDGLLVDLPDPAADEEDRPAAVGVEDLVVTAREHLAGRG 561

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HGRM    K+ VM +F  G   +L+ATTV+EVG+DV +AS++++ +A+ FG+AQ
Sbjct: 562 IRVEMVHGRMQTETKDGVMAAFAAGEVDVLVATTVVEVGVDVPNASVMLVVDADRFGIAQ 621

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGR+GRG     C+L+ H   +  +  RL  +  T DGF +A  DL+ R+EG++LG
Sbjct: 622 LHQLRGRIGRGAHPGLCLLVTHVE-AGPTRERLDRVAATTDGFELARADLEMRREGDVLG 680

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             QSG       +      L++ AR+ A+  +  DPDL+ 
Sbjct: 681 AAQSGSSGLDFVRVLQDAELIDRAREAARAYVRADPDLSG 720


>gi|21552593|gb|AAM54733.1| RecG [Azotobacter vinelandii]
          Length = 381

 Score =  336 bits (861), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 171/364 (46%), Positives = 236/364 (64%), Gaps = 6/364 (1%)

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           A+EAG Q  +MAP  ILA+QHY    ++ +   I +  + G +    R  ALE+IA G  
Sbjct: 3   AIEAGYQVALMAPTEILAEQHYLNFARWLEPLGIDLAWLAGKLKGKARGAALEKIAGG-C 61

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIP 432
            +++GTHALFQD +++  L L I+DEQHRFGVQQRL L QK       PH L+MTATPIP
Sbjct: 62  PMVVGTHALFQDEVRFRNLALAIIDEQHRFGVQQRLALRQKGIDGRLCPHQLIMTATPIP 121

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL +++  D+D S + E P GR P+ T++I  +R  EVIER++    EG++AYW+C  I
Sbjct: 122 RTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRLEVIERVRAACLEGRQAYWVCTLI 181

Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           EE +E   ++    F  L       ++ +IHGRM   +K +VM+ FK G  +LL+ATTVI
Sbjct: 182 EESEELTCQAAETTFEELSAALGELAVGLIHGRMKPAEKAAVMEEFKAGRLQLLVATTVI 241

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           EVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH PLS+    RL+++
Sbjct: 242 EVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSTASHCVLLYHAPLSQLGRERLAIM 301

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           + T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL   R+ A+ +L   P
Sbjct: 302 RETSDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPAVREAAQDLLACWP 361

Query: 672 DLTS 675
              S
Sbjct: 362 QHVS 365


>gi|293192359|ref|ZP_06609470.1| ATP-dependent DNA helicase RecG [Actinomyces odontolyticus F0309]
 gi|292820274|gb|EFF79268.1| ATP-dependent DNA helicase RecG [Actinomyces odontolyticus F0309]
          Length = 715

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 215/671 (32%), Positives = 349/671 (52%), Gaps = 50/671 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITG------YISQHSSFQLQKRRPYKILLND 96
           DLL   P  +        +S + E   VTI         ++  SS  ++     ++ L D
Sbjct: 33  DLLLVAPRRYYHWGRLTPLSSLREGEDVTILAEVAGAHLVANRSSSGVR----LEVTLTD 88

Query: 97  GTGEITLLFFYR---KTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN- 152
           G   ++  FF +   K   ++ +   G+     GK+   + ++ + HP +   + +D+  
Sbjct: 89  GVQFLSATFFAKNQYKLAPIERLLTPGQSFLFAGKVGAYRGKLQLTHPSFEGVDGEDIER 148

Query: 153 -----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207
                 P+  A  SL +  ++     ++++ L    V P+ +  D+ ++  F S A+   
Sbjct: 149 IASRPIPIYPATGSLAS-WAIARAIGMVLDHLDDAHV-PDPVPADVRERAGFASHADCLR 206

Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
            +H P   +D++    AR+ LA+ E    Q+ L   R+  +    +   ++  + ++   
Sbjct: 207 ALHQPETDEDYQQ---ARKALAFAEAFVLQVGLAAQRRGARAVAALASPIDAPLCERFRS 263

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF  T SQ  A+  I  D++ +  M R+LQGDVGSGKT+VAL A+   V AG Q   +
Sbjct: 264 SLPFELTDSQREAVAQIGADLAGEVPMQRLLQGDVGSGKTVVALSALLQVVAAGHQGAFV 323

Query: 328 APIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           AP  +LA+QH   ++   +        V ++TG+   A RR+    +   +  I+ GTHA
Sbjct: 324 APTEVLAEQHAASLRALLEPLGADAPDVRLLTGSTTPAARREIQSAMNAAEPLIVAGTHA 383

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLT---QKATAPHVLLMTATPIPRTLVLTSLG 441
           LFQ+S+++  L LV+VDEQHRFGV+QR  L    +   A H L+MTATPIPRT+ +T  G
Sbjct: 384 LFQESVRFADLALVVVDEQHRFGVEQRAALRGAREDGRAVHELVMTATPIPRTIAMTVFG 443

Query: 442 DIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQI------ 492
           D+D ++++  P+GR P+ T +        ++    R    +++G++ Y +CP+I      
Sbjct: 444 DLDDTRMSGMPSGRTPVATYLADSANAAWVERTWARAAEEIAQGRRVYVVCPRIDASDDV 503

Query: 493 ---EEKKESNFRSVVERFNSLHEHFTSSIAIIH---GRMSDIDKESVMDSFKNGTCKLLI 546
              EE+      SV E    L  H   S   IH   GR     K  +M+ F  G   LL+
Sbjct: 504 ADAEEEGARPLASVEEVTAYLRSHPALSGIAIHELTGRTPSPVKAQIMEDFSTGRAPLLV 563

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGR    S CI ++   L+ +   
Sbjct: 564 ATTVIEVGVDVSEATLMVILDAQQFGLAQLHQLRGRVGRSSLPSLCIAMHRHELTDSGRA 623

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDA 663
           RL    +T DGF +AE DL+ RKEG++LG  QSG     +FL  + +  ++L+  A+ +A
Sbjct: 624 RLQAFADTTDGFELAEADLRLRKEGDVLGAGQSGTATHLRFLSVRRD--EALIRRAKGEA 681

Query: 664 KHILTQDPDLT 674
           + +L QDP L 
Sbjct: 682 ETLLEQDPMLA 692


>gi|34763881|ref|ZP_00144785.1| ATP-dependent DNA helicase recG [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27886344|gb|EAA23615.1| ATP-dependent DNA helicase recG [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 619

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 219/563 (38%), Positives = 330/563 (58%), Gaps = 19/563 (3%)

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IF 145
           ++  K ++ DGTG + +L+F      +K     G +    G+ KK      +++P Y +F
Sbjct: 13  KKIVKAMVTDGTGIMEILWF--GMPYIKKSLKIGEEYLFIGQTKK-SAVFQLINPEYKLF 69

Query: 146 HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAE 204
              Q V+   I  +YS    ++ +  +K++ + L   L    E I K L+++        
Sbjct: 70  SGQQKVSENEILPIYSSNKNITQNSLRKLVEKFLVNFLNYFEENIPKKLIKEYRIMERKS 129

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--A 262
           A   IH P   K+ E    A+ R A +ELL  ++ +L  R   +        VEGK    
Sbjct: 130 AIKNIHYPISMKEIE---EAKRRFAIEELLILELGILKNRFIIENSNSKNYKVEGKKEKV 186

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++ L  + F+ T +Q+  IK+I  ++S    + R++QGDVGSGKT+VA++ +    E G 
Sbjct: 187 REFLSQLTFNLTNAQKRVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGY 246

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  +MAP  ILA QHY  IK+  +   + VE++T ++    + + LE IA+G+  I+IGT
Sbjct: 247 QGALMAPTEILANQHYLGIKERLEKIGLRVELLTSSIKGKKKNEILEGIANGKIDIVIGT 306

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H+L +D + + KL L+++DEQHRFGV QR KL +K    ++L+M+ATPIPR+L L+  GD
Sbjct: 307 HSLIEDDVIFKKLGLIVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGD 366

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKKES 498
           +D+S I E P GR PIKT  I     DE +E++   +    +EG +AY++ P IE   + 
Sbjct: 367 LDLSIIDELPPGRTPIKTKWIA---SDEDLEKMYNFIYKKVNEGNQAYFVAPLIETSDKM 423

Query: 499 NFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             +SV +    +   F++  I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV
Sbjct: 424 ALKSVDKVSEEIERKFSNKKIGIIHGKMKAKEKDDVMLKFKNKEYDILIATTVIEVGIDV 483

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
             ++I+ I NAE FGL+ LHQLRGRVGRG + S C L+ +  +++NS  RLS+++ TEDG
Sbjct: 484 PASTIMTIYNAERFGLSALHQLRGRVGRGSKQSYCFLISN-SITENSKQRLSIMEETEDG 542

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F IAEEDLK R  GEI G++QSG
Sbjct: 543 FRIAEEDLKLRNSGEIFGLRQSG 565


>gi|108804209|ref|YP_644146.1| ATP-dependent DNA helicase RecG [Rubrobacter xylanophilus DSM 9941]
 gi|108765452|gb|ABG04334.1| ATP-dependent DNA helicase RecG [Rubrobacter xylanophilus DSM 9941]
          Length = 710

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 236/674 (35%), Positives = 359/674 (53%), Gaps = 22/674 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS-EERIV 70
           P+    GVG +    L ++        +   DL+ ++PS   D     +ISE+   ER  
Sbjct: 25  PVGELPGVGPRIERALREL------GISSVADLITHYPSRHEDLSNVRRISELRVGERAT 78

Query: 71  TITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            +          +  + RP  +   L DGTG I  + + R    L+     G ++ V+G+
Sbjct: 79  VLARVTGTRPVGRPVRGRPPGFSAQLYDGTGYIPAVVWGR--HWLQGQLVPGTRVVVSGE 136

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFP---LIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           +++     +      +         P       VY     +     + +I  AL+ +  +
Sbjct: 137 VQRRYGIQLAARSIELVDGEDGQGGPHAGRFVPVYPSNRHIQPRRLRTLIHRALAGVGRI 196

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            + +  DLL ++  P++ +A + +H P    D    + A  RL + EL   Q AL   + 
Sbjct: 197 LDPLPADLLARRDLPALHDAIHEVHFP---HDRRSLAAALRRLVFQELFVIQAALAARKA 253

Query: 246 QFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              + E G     +G +    L+ +PF  T +Q+  + +IL DM  +  M R+LQGDVGS
Sbjct: 254 HAARHERGRSHAGDGSLLNPYLQGLPFGFTGAQQRVLGEILADMRSERPMRRLLQGDVGS 313

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT VA+ A+  AVEAGGQ  +MAP  +LA+QHY  I    +   + V ++TG+   A R
Sbjct: 314 GKTAVAVAALLTAVEAGGQGALMAPTEVLAEQHYLSISGALRKLPVRVVLLTGSQGAARR 373

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R+ALE +  G+AHI +GTHAL Q  + +  L LV+VDEQHRFGV QR  + +K   P  L
Sbjct: 374 REALEALRSGEAHIAVGTHALIQKGVGFRDLSLVVVDEQHRFGVGQRTTIREKGRTPDTL 433

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL LT  GD+++S I E P GRKP++T ++P+ R  E    ++  L  G++
Sbjct: 434 IMTATPIPRTLSLTLYGDLEVSVIDELPPGRKPVETRLVPLGRRHEAYGEVRRELERGRQ 493

Query: 485 AYWICPQIEEKKE-SNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           AY ICP +EE +     R+  E +  L         + ++HGRM   +K  VM +F+ G 
Sbjct: 494 AYVICPLVEESEALEEVRAAEELYEELRRDIFPERRVGLLHGRMRAQEKREVMSAFRAGR 553

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L+AT V+EVG+DV +AS+I+IE AE FGL+QLHQLRGRV RG     C L+   P +
Sbjct: 554 VEVLVATVVVEVGVDVPNASVIVIEGAERFGLSQLHQLRGRVCRGTHPPRCFLVAD-PAT 612

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + +  RL  L   +DGF ++E DL  R EG + G +QSGMP   +A+      +L  AR+
Sbjct: 613 EEAGRRLEALVEHQDGFRLSEVDLAIRGEGTLFGSRQSGMPDLKVAKLLRDVEVLVEARR 672

Query: 662 DAKHILTQDPDLTS 675
           +A  ++ +DP L S
Sbjct: 673 EAFDLVARDPALRS 686


>gi|291299625|ref|YP_003510903.1| ATP-dependent DNA helicase RecG [Stackebrandtia nassauensis DSM
           44728]
 gi|290568845|gb|ADD41810.1| ATP-dependent DNA helicase RecG [Stackebrandtia nassauensis DSM
           44728]
          Length = 718

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 222/676 (32%), Positives = 361/676 (53%), Gaps = 58/676 (8%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100
           DL+ ++P  +  R  R  +  +      T+   +   ++  ++ RR    +++++D  G 
Sbjct: 31  DLIHHYPFRYAQRGERTDLDSLEIGEQATVLAQVRAVTNKPMRSRRGSMLEVVVSDDDGR 90

Query: 101 -ITLLFFYR--KTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----- 152
            +TL FF +  +T  LK     GR    +GK+ + + R  +  P +      D +     
Sbjct: 91  TLTLTFFNQPWQTRYLKA----GRWGLFSGKVTEFRGRRQLNGPDFRMLADPDDDEAGEM 146

Query: 153 --------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
                    P+  A   +PT        + +  AL  L    + + +DL  K S     +
Sbjct: 147 IEEFAGALIPVYRAAGKVPTWT----IARCVRVALDVLEPPADPLPEDLRHKHSLIGFND 202

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQ 263
           A + IH P   +  E    A++RL + E  + Q+ L+  + +      +P    +  +  
Sbjct: 203 ALHAIHRP---ESTEQLYAAKKRLKWQEAFSLQLTLVQRKARAATTPAVPRPGRDDGLLA 259

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
                +PF  T  Q     ++   +S  + M R+LQGDVG+GKTLV++ AM   V++G Q
Sbjct: 260 AFDAKLPFELTDGQREVGDELAAALSTPHPMHRLLQGDVGAGKTLVSVRAMLQVVDSGAQ 319

Query: 324 AVIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKALER 370
           AV++AP  +LA QHY  I K              T+ T++   ++TG++    +R+AL  
Sbjct: 320 AVLLAPTEVLAAQHYRTILKQLGDLGRGGELGAPTEATRVT--LVTGSLGAKAKREALAS 377

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTAT 429
           +A G A I++GTHAL  + + +  L LV+VDEQHRFGV+QR  L  KA+  PHVL+MTAT
Sbjct: 378 LADGSAGIVVGTHALLYEGVDFADLGLVVVDEQHRFGVEQRDALRAKASDPPHVLVMTAT 437

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAY 486
           PIPRT+ +T  GD++ SK+ + P GR PIKT ++P      +    +RL+  + +G +AY
Sbjct: 438 PIPRTVAMTVYGDLETSKLGQLPQGRSPIKTHVVPGTDERWVARSWQRLREEVGKGHQAY 497

Query: 487 WICPQI--EEKKESNFR----SVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFK 538
            +CP++  ++K + + R    +V++    L +   S +   I+HGRM   +K++VM  F 
Sbjct: 498 VVCPRVGDDDKVDDSERRAPLAVLDVGPRLADGPLSGLKLGILHGRMPPDEKDAVMGRFS 557

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTVIEVG+DV +A++++I +AE FG++QLHQLRGRVGRG     C+L+   
Sbjct: 558 AGELDVLVATTVIEVGVDVPNATMMVIMDAERFGVSQLHQLRGRVGRGSAPGLCLLVTEA 617

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLE 657
             +  S  RL  + +T DGF +AE DL+QR+EG++LG  QSG    +     L D+ L+ 
Sbjct: 618 NAASPSGERLEAVASTTDGFRLAELDLEQRREGDVLGDAQSGAKSHVRLLSLLRDAELIG 677

Query: 658 IARKDAKHILTQDPDL 673
            AR +A  ++  DP+L
Sbjct: 678 EARAEAVEVIAADPEL 693


>gi|187735706|ref|YP_001877818.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425758|gb|ACD05037.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 699

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 218/658 (33%), Positives = 353/658 (53%), Gaps = 29/658 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEE-------RIVTITGYISQHSSFQLQKRRPYKILLN 95
           DLLF  P  + DR    +   +S         R+V +          + + R    +L +
Sbjct: 46  DLLFMLPRRYEDRRMFDRYDSLSSGVPVCLRGRVVDVGWKGWGGRGGKGRGRYVEAVLAD 105

Query: 96  DGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF---HNSQDV 151
           + + G+      +     +  +   G+++ V G++K    ++ MVHP +      + Q +
Sbjct: 106 EQSLGQTRFSCLWFSMPGVARMLCAGQEMIVYGRMKPYGKKLSMVHPDFEIIREGDEQSI 165

Query: 152 NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
           +   I  VY    G++V   ++I+ E LSRL   PE    ++ +         A   +H 
Sbjct: 166 HLNRIVPVYGGRMGIAVRRLREIVWETLSRLSPAPE---PEVYEFVPDTPCKTALRDLHF 222

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P  A+       AR R A +E LA Q+ +   R++  +  G+       + + +  ++PF
Sbjct: 223 PETAEA---RDRARRRFALEECLAQQLNVAYRRRRADEVPGMRTAGSSHLVKDLADSLPF 279

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T++Q+  +++I +DM     M R+LQGDVGSGKTLVAL AM  AVE G  AV+MAP  
Sbjct: 280 ELTEAQKRCVREIYRDMKAPRSMNRLLQGDVGSGKTLVALCAMLLAVEHGYSAVMMAPTQ 339

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG-QAHIIIGTHALFQDSI 390
           ILA+QHY   ++      + V ++T +      RK    ++ G Q  I++GTHAL     
Sbjct: 340 ILAEQHYLKFRQMLDKLDVPVSLVTAD------RKEESHVSFGKQGGIVVGTHALLYGKN 393

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
              ++ LV++DEQH+FGV QR KL  +   P VL+MTATPIPRTL LT  G++D+S +  
Sbjct: 394 VPERVGLVVIDEQHKFGVNQREKLIDREERPDVLVMTATPIPRTLTLTFYGELDVSILDG 453

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN-- 508
            P GR  + T I       +V+  ++  L EG++ Y + P I+ +     ++V + ++  
Sbjct: 454 VPRGRGAVVTAIRTEKDKGKVLAFVRNQLEEGRQIYVVSPLIDGEDSRKGKAVTKEWDEW 513

Query: 509 -SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            +L  H    + ++HGRMS  +KE+VM  F++    +L++TTV+EVG+DV +A+++II N
Sbjct: 514 KALLPHV--DVGLLHGRMSSEEKEAVMKDFRSNRISVLVSTTVVEVGVDVPNATVMIINN 571

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           AE FGL+QLHQLRGR+GRG   S CIL+         + +L +++ T +GF +AE+DL+ 
Sbjct: 572 AESFGLSQLHQLRGRIGRGSHKSYCILMTDARPEDEQWEKLRIVETTANGFDLAEQDLRL 631

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           R  G++LG  QSG+      +  L   L+   R+ A+ IL +DP+L S + + +R LL
Sbjct: 632 RGPGDVLGTSQSGLKGVRFEEWLLDARLIHRGRQLAEAILAEDPNLESAKYRPLRFLL 689


>gi|319948348|ref|ZP_08022492.1| ATP-dependent DNA helicase RecG [Dietzia cinnamea P4]
 gi|319437979|gb|EFV92955.1| ATP-dependent DNA helicase RecG [Dietzia cinnamea P4]
          Length = 756

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 225/708 (31%), Positives = 372/708 (52%), Gaps = 87/708 (12%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS--QHSSFQLQKRRPYKIL---LNDG 97
           DLL   P  +     R    ++ +   VT+ G ++  +  ++  +K +P ++L   + DG
Sbjct: 34  DLLHTLPRRYRQHGQRYDKRQLVDGERVTVIGTVTTARTRTYHTKKGQPREMLTLTVEDG 93

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI-----------FH 146
             E  ++FF  ++  +K +   G      G +   +    + HP ++             
Sbjct: 94  DTEFRVVFFAGRS--IKYLLPVGTLAMFDGTVSHFRRAPDLKHPEFLVLRPASGQGGQLK 151

Query: 147 NSQDV-------------------NFPLIEAVYSLPTGL-SVDLFKKIIVEALSRLPVLP 186
            S D+                   + PL+  VY+   G+ S DL   ++    + +PV+ 
Sbjct: 152 GSGDLAALARLAAEIDAEGGPSLFDRPLL-PVYAAKEGVTSWDLLGAVVTALRALVPVV- 209

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + ++  +        + EA    H P  A++ +    A  RL +DE LA Q+ L   R+ 
Sbjct: 210 DPLDDTVRSAAGLMGLDEALRKAHLPENAREKDH---AGHRLRFDEALALQLLLGARRRF 266

Query: 247 FKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
             ++     P+  +G I   +   +PF  T  Q++ +++I  D+++   M R+LQG+VGS
Sbjct: 267 VARDPAPASPVRDDG-IRAAMGARMPFELTDGQKAVLEEISADLARDEPMNRLLQGEVGS 325

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-------------TQNTQII 351
           GKT+VAL+AM   ++AG Q V++AP  +LA QH+  +                 + T+++
Sbjct: 326 GKTVVALLAMLQVLDAGRQCVMLAPTEVLAVQHHRSLTAMLGDLGERGRLGAPDEATRVV 385

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
             ++TG+M  A RR AL  I  G+A I++GTHAL QDS+ ++ L LV+VDEQHRFGV+QR
Sbjct: 386 --LLTGSMSTAQRRAALLDIVTGEAGIVVGTHALIQDSVDFFDLGLVVVDEQHRFGVRQR 443

Query: 412 LKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
            +L  K  A   PH+L+MTATPIPRT+ +T  GD+++S++ E P GR+PI T ++P    
Sbjct: 444 DRLRSKGRAGMVPHLLVMTATPIPRTIAMTVFGDLEVSELEELPGGRRPISTSVVPARER 503

Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQIE------------EKKESNFRSVVERFNSLHE 512
              +    ER++  ++ G +AY +C +I+            +  E   R  +     LHE
Sbjct: 504 PAWLVRAWERVREEVAAGHRAYVVCSRIDADDGRSDDGTKGDDDEGGDRPPLVAAVDLHE 563

Query: 513 HFTSS------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           + ++       I ++HGR+   +K++ M  F  G   +L++TTVIEVG+DV +A+++++ 
Sbjct: 564 YLSTGPLAGLRIGLLHGRLPSEEKDATMADFAAGRLDVLVSTTVIEVGVDVPEATVMVVM 623

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           +AE FG++QLHQLRGRVGRG     C+L+ +      S  RL  +  T DGF++A  DL 
Sbjct: 624 DAERFGVSQLHQLRGRVGRGGLPGLCLLVTNSRAGSRSMERLDAVAATTDGFVLAHLDLV 683

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDL 673
           QR+EG++LG  QSG    L     + D  ++EIAR+ A+ IL  DP L
Sbjct: 684 QRREGDVLGDAQSGALSALRLLSVVDDGDVIEIARRHAEEILEADPGL 731


>gi|258652096|ref|YP_003201252.1| ATP-dependent DNA helicase RecG [Nakamurella multipartita DSM
           44233]
 gi|258555321|gb|ACV78263.1| ATP-dependent DNA helicase RecG [Nakamurella multipartita DSM
           44233]
          Length = 760

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 216/654 (33%), Positives = 340/654 (51%), Gaps = 74/654 (11%)

Query: 91  KILLNDGTGEITLLFF--YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF--- 145
           K+++ D   ++T  FF  Y  T+ L      G     +GKI K +  + M  P       
Sbjct: 95  KVVIGDDHRQLTCTFFNQYHWTKTLP----PGTDAMFSGKITKFQTELQMSSPSVAILSD 150

Query: 146 ---HNSQDVNFPL--IEA-------VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
               +    N P+  IE+       VY L  G++  + ++ +   L   P + + + + L
Sbjct: 151 GRGSDGSTENNPIEIIESFPGGVIPVYPLVEGVTQAVLQRSVRLLLDLGPRIEDPVPEVL 210

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-G 252
           L ++    +A A + IH PR  +  +    A+ RL YDE L+ Q+ +L  RK   +E   
Sbjct: 211 LAQRGLVDLATALHDIHRPRTQEHLDR---AKARLRYDEALSVQL-VLARRKALAREFPA 266

Query: 253 IPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            P   V G +      N+PF  T  Q +  + I  D++  + M R+LQG+VGSGKT+VAL
Sbjct: 267 EPCPRVPGGLLDAFDANLPFELTAGQRAVGEAIGTDLATIHPMNRLLQGEVGSGKTVVAL 326

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMP 360
            AM   +++G QAV++AP  +LA QH   +++                   + ++TG++P
Sbjct: 327 RAMLQVIDSGRQAVMLAPTEVLAAQHARSLRQVLGPLGRGGELGAPAESTAITLLTGSLP 386

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--- 417
              R+ AL  IA GQA I++GTHAL  + + +  L L++VDEQHRFGV+QR  L  K   
Sbjct: 387 AKARKLALLTIASGQAGIVVGTHALLSEGVFFANLGLIVVDEQHRFGVEQRHALRTKHPD 446

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIE 473
            + PHVL+MTATPIPRT+ +T  GD+D S + E P GR PI T ++P       ++   +
Sbjct: 447 GSPPHVLVMTATPIPRTVAMTVFGDLDTSTLDELPRGRSPIGTTVVPAAEKPAWVERAWQ 506

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---------------- 517
           R++  + +G +AY +CP+I +    +    +    S+ E  + +                
Sbjct: 507 RIREEVGKGHQAYVVCPKIGDGSGEDAAGELFEDGSVAETDSDAEGESTRRAPLAVTQVA 566

Query: 518 ------------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                       + ++HGR+   +K++VM +F  G   +L+ATTVIEVG+DV +A++++I
Sbjct: 567 AMLRDGPLADLRVGVLHGRLVPAEKDAVMTAFAAGELDVLVATTVIEVGVDVPNATMMVI 626

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            +AE FG++QLHQLRGRVGRG     C+L+   P       RL+ +  T DGF +AE DL
Sbjct: 627 MDAERFGMSQLHQLRGRVGRGSAPGICLLVTESPEGTPGRFRLAAVAATTDGFELAEADL 686

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRG 678
           + R+EG +LG +Q+G    L     L D  ++E AR DA  ++  DP +    G
Sbjct: 687 ELRREGNVLGTEQAGKSTALRQLSLLRDRDVIEDARTDAAGLVGDDPAMARWPG 740


>gi|302865853|ref|YP_003834490.1| ATP-dependent DNA helicase RecG [Micromonospora aurantiaca ATCC
           27029]
 gi|302568712|gb|ADL44914.1| ATP-dependent DNA helicase RecG [Micromonospora aurantiaca ATCC
           27029]
          Length = 733

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 220/706 (31%), Positives = 367/706 (51%), Gaps = 62/706 (8%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           VG++ +  L+  ++   A      DL+++ P  + +R     I  +     VT+   + +
Sbjct: 16  VGERTAKALAGHLDLHTAG-----DLIYHFPRRYDERGEHTDIRSLDVGEQVTVLAQVQR 70

Query: 79  HSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
            +   +++RR    ++ + DG+G +    F+      +     GR     GK+ + + + 
Sbjct: 71  TAVRPMRQRRGNLLEVTVGDGSGGVLTCTFFGNQAWRERELRPGRWGLFAGKVTEFRGKR 130

Query: 137 IMVHPHYIFHNSQDVN---------------FPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
            +  P Y+                        P+  A  ++PT +     + ++      
Sbjct: 131 QLNGPEYVLLGEGSEGEAAANEEVEEFAGALIPVYPAAAAVPTWVIARCVRVVLDTFTPP 190

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              LP  +       ++   I  A   IH P      E    AR RL +DE  A Q+ L+
Sbjct: 191 EDPLPATVRA----TRNLADIGTALREIHRPTSK---EALYRARRRLKWDEAFAVQLTLV 243

Query: 242 LMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +++     G     + G +       +P+  T  Q+   ++I  D+++ + M R+LQG
Sbjct: 244 QRKQRAAASPGRARPAKAGGLLDAFDARLPYELTSGQQVVGREIAADLARPHPMHRLLQG 303

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-----------KKYTQNTQ 349
           +VGSGKT+VAL AM   V+AGGQA ++AP  +LA QH+  I           +    +  
Sbjct: 304 EVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHHRGILDLLGPLGRAGELGAADDA 363

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
             VE++TG++  A RR+AL  +A G+A I++GTHAL  + + ++ L LV+VDEQHRFGV+
Sbjct: 364 TRVELVTGSLGAAARRRALAEVAEGRAGIVLGTHALLYEGVDFHDLGLVVVDEQHRFGVE 423

Query: 410 QRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           QR  L  KA   PHVL+MTATPIPRT+ +T  GD++ S +++ P GR PI + ++P    
Sbjct: 424 QRDALRAKAEQPPHVLVMTATPIPRTVAMTVYGDLETSTLSQLPQGRSPIASHVVPAAEK 483

Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQIEE---------KKESNFR----SVVERFNSLH 511
              +D    RL+  +++G +AY +CP+I E         +++ N R    +V E    L 
Sbjct: 484 PAFLDRAWRRLREEVTKGHQAYVVCPRIGEGPVSDEEPPREDDNGRRPPLAVTEVAPLLA 543

Query: 512 EHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           E       I ++HGR+   +K++VM ++ +G   +L+ATTV+EVG++V +A+++I+ +A+
Sbjct: 544 EGPLHGLRIGVLHGRLPADEKDAVMRAYADGELDVLVATTVVEVGVNVPNATVMIVLDAD 603

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            FG++QLHQLRGRVGRG     C+L+       ++  RL  + +T DGF +AE DL+QR+
Sbjct: 604 RFGVSQLHQLRGRVGRGSAAGLCLLVTEAAEGSSARERLDAVASTTDGFKLAELDLEQRR 663

Query: 630 EGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLT 674
           EG++LG  QSG    L     L D+ L+  AR +A  ++  DPDL+
Sbjct: 664 EGDVLGATQSGRRSHLRLLSLLRDTELIRDARAEAIELVEDDPDLS 709


>gi|327537366|gb|EGF24098.1| ATP-dependent DNA helicase RecG [Rhodopirellula baltica WH47]
          Length = 556

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 186/521 (35%), Positives = 293/521 (56%), Gaps = 33/521 (6%)

Query: 184 VLPEWIEKDLLQKKS---------FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           VLPE +  +  Q+ +          P I++A   IH P    D    + A+ RL + ELL
Sbjct: 16  VLPERLRTEAAQRLNAAGMELPDVLPEISDALRGIHLPESEADL---TAAQTRLVFQELL 72

Query: 235 AGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q+AL + R+    E+  P +     +  +ILR  PF  T  Q   +  I  DM+++  
Sbjct: 73  VMQLALAMRRRSLTSELRAPSLECTATVRNRILRRFPFELTGDQRRVMDVIAADMARQFP 132

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA+ AM  AV  G QA +MAP  +LA+QH+  +++   ++++ V 
Sbjct: 133 MNRLLQGDVGSGKTVVAIFAMLVAVAGGHQATLMAPTEVLARQHHATLQRMLADSRVRVG 192

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++ G++  A RR+ +E+I  G+  I+IGT AL    +++++L L ++DEQH+FGV+QR+ 
Sbjct: 193 LLCGSLGAAERRETVEKIRAGELDIVIGTQALLY-GVEFHRLGLCVIDEQHKFGVKQRVT 251

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L      PH L+M+ATPIPR++ +T  GD+D+S + EKPAGR  + T +   +  D    
Sbjct: 252 LRDGGVDPHYLVMSATPIPRSVAMTQFGDVDLSTLREKPAGRGAVHTYLAGDSWRDRWWA 311

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSV----------VERFNSLHEHFTS------- 516
            +K  ++EG++A+ + P++  + ES    +           E   S+H  +         
Sbjct: 312 FVKERVAEGRQAFVVAPRVGPEVESADEELSELIDPAEPPAEDITSVHSTYEQLRTGPLK 371

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              + ++HGRM+  +K+ VM+SF  G   +L++TTVIEVGIDV +A+++ I     FGLA
Sbjct: 372 GLRVGLLHGRMASDEKQQVMESFAEGELDVLVSTTVIEVGIDVPNATVMAILGGNRFGLA 431

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRV RG       +            RL V + T DGF +AE D + R  G++L
Sbjct: 432 QLHQLRGRVSRGTHAGHVCVFVDGDKPPQDDERLKVFEQTLDGFELAEADFRLRGPGDVL 491

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           G +QSG  +  IA       +L++AR+ A+  + QDP++ S
Sbjct: 492 GQRQSGDARLRIADLHRDVEILQVAREMAQDWIDQDPEMES 532


>gi|225022638|ref|ZP_03711830.1| hypothetical protein CORMATOL_02681 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944546|gb|EEG25755.1| hypothetical protein CORMATOL_02681 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 711

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 228/679 (33%), Positives = 344/679 (50%), Gaps = 67/679 (9%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-I 101
           +LL ++P ++   +  P +++ ++  IVT  G I   ++   +K      +    T E I
Sbjct: 33  ELLTHYPRTYATHNDTPFLNQANDGDIVTCIGEIIHTATIHTKKTTTIYTITIQTTNELI 92

Query: 102 TLLFFYRK---TEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
              FF+ K       +     G     TGKIK  +    + HP ++  N+     P    
Sbjct: 93  KATFFHAKPHQAAWCERTLTRGTTAIFTGKIKTYRGAPQLQHPDFLLLNTP---HPTSTG 149

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPE------W---------------IEKDL--LQ 195
                T    D      + +L  +P+ P       W               I   L    
Sbjct: 150 ALKQLTAYGNDTDISNFLTSLPAIPIYPARQRITTWRILGAIHHILDHTNPIPDPLGPFT 209

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255
               P+   A   IH     +D       R RLAY+E LA  + + + R         P+
Sbjct: 210 PPDLPTFDRALRGIH-----QDGTNAYTYRHRLAYNEALALALVMEIRRHDTTTRHATPL 264

Query: 256 NVEGKIA----QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           +     A    + ++ N+P++ T  Q++ I  I  D++  + M R+LQG+VGSGKT++AL
Sbjct: 265 SPHPTGAPHHRETLINNLPYTLTTGQQTIINTIATDLNSPHPMQRLLQGEVGSGKTIIAL 324

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI--ITGNMPQAHRRKALE 369
           IAM  AVE G Q  ++AP  +LA QH   + +   N  I + I  +TG+M    +  AL 
Sbjct: 325 IAMLQAVENGKQCALLAPTSVLAHQHGHSLTELLTNAGINLTITTLTGDMTPTQKNHALL 384

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLM 426
            I  G A+IIIGTHAL QD++++Y L LVI+DEQHRFGV+QR  L  K    T PH+L+M
Sbjct: 385 AIISGDANIIIGTHALIQDTVEFYDLGLVIIDEQHRFGVEQRDSLRTKGKNHTTPHLLVM 444

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKVVLSEGK 483
           TATPIPRT+ +T  GD++ S + E P GR+PIK+ ++P           E ++  + +G 
Sbjct: 445 TATPIPRTIAMTFFGDLNHSTLNELPGGRRPIKSYVVPEYLPKYTTRAYEVMREHIHQGH 504

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS------IAIIHGRMSDIDKESVMDSF 537
           + Y +CP+I          V+E     H+H + +      I ++HG++ D DK++ M  F
Sbjct: 505 QIYIVCPRINGPG-----GVLE----THQHLSETEFKNYRIGLLHGQLKDADKDTTMRQF 555

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            NG   +LIATTVIEVGIDV +A+II+I  +E+ G++QLHQLRGRVGRG   S C   + 
Sbjct: 556 ANGDLDILIATTVIEVGIDVPNATIIMIRESENLGVSQLHQLRGRVGRGGYDSICFFHHT 615

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDS 654
                 +  R+  +  T DGF +AE DL QR EG++LG  QSG  +   FL    ++   
Sbjct: 616 AERGTPADKRIWQMAATTDGFQVAEIDLIQRHEGDVLGTSQSGTNRKIAFLNLARDI--G 673

Query: 655 LLEIARKDAKHILTQDPDL 673
           L+  A +DAK+I+  + DL
Sbjct: 674 LINRANRDAKNIVAHNLDL 692


>gi|305681976|ref|ZP_07404780.1| putative ATP-dependent DNA helicase RecG [Corynebacterium
           matruchotii ATCC 14266]
 gi|305658449|gb|EFM47952.1| putative ATP-dependent DNA helicase RecG [Corynebacterium
           matruchotii ATCC 14266]
          Length = 711

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 228/679 (33%), Positives = 344/679 (50%), Gaps = 67/679 (9%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-I 101
           +LL ++P ++   +  P +++ ++  IVT  G I   ++   +K      +    T E I
Sbjct: 33  ELLTHYPRAYATHNDTPFLNQANDGDIVTCIGEIIHTATIHTKKTTTIYTITIQTTNELI 92

Query: 102 TLLFFYRK---TEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
              FF+ K       +     G     TGKIK  +    + HP ++  N+     P    
Sbjct: 93  KATFFHAKPHQAAWCERTLTRGTTAIFTGKIKTYRGAPQLQHPDFLLLNTP---HPTSTG 149

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPE------W---------------IEKDL--LQ 195
                T    D      + +L  +P+ P       W               I   L    
Sbjct: 150 ALKQLTAYGNDTDISNFLTSLPAIPIYPARQRITTWRILGAIHHILDHTNPIPDPLGPFT 209

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255
               P+   A   IH     +D       R RLAY+E LA  + + + R         P+
Sbjct: 210 PPDLPTFDRALRGIH-----QDGTNAYTYRHRLAYNEALALALVMEIRRHDTTTRHATPL 264

Query: 256 NVEGKIA----QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           +     A    + ++ N+P++ T  Q++ I  I  D++  + M R+LQG+VGSGKT++AL
Sbjct: 265 SPHPTGAPHHRETLINNLPYTLTTGQQTIINTIATDLNSPHPMQRLLQGEVGSGKTIIAL 324

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI--ITGNMPQAHRRKALE 369
           IAM  AVE G Q  ++AP  +LA QH   + +   N  I + I  +TG+M    +  AL 
Sbjct: 325 IAMLQAVENGKQCALLAPTSVLAHQHGHSLTELLTNAGINLTITTLTGDMTPTQKNHALL 384

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLM 426
            I  G A+IIIGTHAL QD++++Y L LVI+DEQHRFGV+QR  L  K    T PH+L+M
Sbjct: 385 AIISGDANIIIGTHALIQDTVEFYDLGLVIIDEQHRFGVEQRDSLRTKGKNHTTPHLLVM 444

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKVVLSEGK 483
           TATPIPRT+ +T  GD++ S + E P GR+PIK+ ++P           E ++  + +G 
Sbjct: 445 TATPIPRTIAMTFFGDLNHSTLNELPGGRRPIKSYVVPEYLPKYTTRAYEVMREHIHQGH 504

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS------IAIIHGRMSDIDKESVMDSF 537
           + Y +CP+I          V+E     H+H + +      I ++HG++ D DK++ M  F
Sbjct: 505 QIYIVCPRINGPG-----GVLE----THQHLSETEFKNYRIGLLHGQLKDADKDTTMRQF 555

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            NG   +LIATTVIEVGIDV +A+II+I  +E+ G++QLHQLRGRVGRG   S C   + 
Sbjct: 556 ANGDLDILIATTVIEVGIDVPNATIIMIRESENLGVSQLHQLRGRVGRGGYDSICFFHHT 615

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDS 654
                 +  R+  +  T DGF +AE DL QR EG++LG  QSG  +   FL    ++   
Sbjct: 616 AERGTPADKRIWQMAATTDGFQVAEIDLIQRHEGDVLGTSQSGTNRKIAFLNLARDI--G 673

Query: 655 LLEIARKDAKHILTQDPDL 673
           L+  A +DAK+I+  + DL
Sbjct: 674 LINRANRDAKNIVAHNLDL 692


>gi|307329828|ref|ZP_07608983.1| ATP-dependent DNA helicase RecG [Streptomyces violaceusniger Tu
           4113]
 gi|306884557|gb|EFN15588.1| ATP-dependent DNA helicase RecG [Streptomyces violaceusniger Tu
           4113]
          Length = 736

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 210/655 (32%), Positives = 338/655 (51%), Gaps = 61/655 (9%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100
           DLL ++P  + +R    ++S++  +  VT+   ++     +F   + R  ++ + DG+G 
Sbjct: 29  DLLHHYPRRYAERGELTRLSDLPLDEHVTVVAQVADARVHTFNGGRGRRLEVTITDGSGR 88

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-------- 152
           + L+FF +     +     G +    GK+     +  + HP +    ++           
Sbjct: 89  LQLVFFGKGVHKPRTELQPGTRAMFAGKVSVFNRKRQLAHPEFKALGAESGAEAVEAFAH 148

Query: 153 -----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207
                +P  + + S     ++D          + L  L + +   L + +   ++ EA  
Sbjct: 149 QLLPLYPACKQMESWQIQQAIDTVLGPAGHEETALAGLVDPLPDSLREGRGLATLPEALR 208

Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKIL 266
            IH P    D      ARERL +DE    Q+AL   R+   +    P   V   +     
Sbjct: 209 KIHRPATKTDIAM---ARERLKWDEAFVLQVALARRRRADAQLPAAPRKPVPDGLLTAFD 265

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             +PF+ T  Q    ++I  D++  + M R+LQG+VGSGKT+VAL AM   V+AGGQA +
Sbjct: 266 ARLPFTLTDGQRRVSEEIFADLATDHPMHRLLQGEVGSGKTMVALRAMLGVVDAGGQAAM 325

Query: 327 MAPIGILAQQHYEFIKKYT-------------QNTQIIVEIITGNMPQAHRRKALERIAH 373
           +AP  +LAQQH+  I +               Q T+++  ++TG+M  A RR+AL  +  
Sbjct: 326 LAPTEVLAQQHHRSITEMMGELAEGGMLGGAEQGTKVV--LLTGSMGAAARRQALLDLVT 383

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIP 432
           G+A I+IGTHAL +D +Q+  L LV+VDEQHRFGV+QR  L  K    PH+L+MTATPIP
Sbjct: 384 GEAGIVIGTHALIEDKVQFNDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIP 443

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWI 488
           RT+ +T  GD++ S + + P+GR PI + ++P       +    ER++  ++ G + Y +
Sbjct: 444 RTVAMTVFGDLETSVLDQLPSGRSPIASHVVPAKDKPHFLTRAWERVREEVAAGHQGYVV 503

Query: 489 CPQI--------------------EEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMS 526
           CP+I                    +E ++    +VVE    L +   S   + ++HGRM 
Sbjct: 504 CPRIGDDIGDEGETPKGAASPSPEDEAEKRPPLAVVEVAEQLTKGPLSGLRVEVLHGRMQ 563

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              K+ VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG
Sbjct: 564 PEAKDDVMRRFAAGEVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRG 623

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
                C+L+   P       RL  +  T DGF ++  DL+QR+EG++LG  QSG+
Sbjct: 624 SAAGLCLLVSDMPEGSPPRARLGAVAATLDGFELSRIDLEQRREGDVLGQAQSGV 678


>gi|262340925|ref|YP_003283780.1| ATP-dependent DNA helicase RecG [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272262|gb|ACY40170.1| ATP-dependent DNA helicase RecG [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 686

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 235/676 (34%), Positives = 362/676 (53%), Gaps = 48/676 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEER---IVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           DLLF++P  +I       ISE+S+      V I G I+       +K + +   L D TG
Sbjct: 35  DLLFFYPKGYIHLPILKNISELSKNNNNNFVKILGEITNIEEINYKKGKIWIARLEDKTG 94

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
            I L++F +KT  LKNV  +   I V+GK+K  + +I M+HP+  +       +P    V
Sbjct: 95  FIELVWF-QKTNFLKNVK-KNITIIVSGKVKCFQKKIQMIHPNIQYSEKNYSIYP----V 148

Query: 160 YSLPTGLSVDLFKKIIVEA--LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           YS+P  L     KK I  +  ++ L  L E  + D+ +      + +  N+     K K 
Sbjct: 149 YSIPRNLK----KKGINNSFMINLLKNLIEESKNDIEEFFFQEFLEKKLNV-----KKKS 199

Query: 218 FEWTSPARERLAYDELLAGQIALLL---------MRKQFKKEIGIPINVEGKIAQKILRN 268
           F+  S +R    + +L++  I   +            + K     P    GK      + 
Sbjct: 200 FDSNSFSR---IFKQLISSTIFFKIEELFLLKLFFLSKRKTASSRPFPKLGKNFHNFYKY 256

Query: 269 -IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +PF+ T+ Q+  +K+I  D+ +  +M R+LQG+VG GKT++A+++M  A++ G Q+ +M
Sbjct: 257 FLPFTLTEGQKKVLKEIWNDLKKPIQMNRLLQGEVGCGKTIIAILSMLIALDNGFQSCLM 316

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  +LA QHY  IK+      I + ++T +   + R+     I  G+  I+IGTHAL Q
Sbjct: 317 APTEVLAIQHYSSIKEMFSKIGIKIALLTSSTSDSIRKCLYHEIFTGKISILIGTHALIQ 376

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDIS 446
           + +Q+  L L I+DE+ RFGV+QR K+ +K    PH+L+MTATPIPRTL      D++IS
Sbjct: 377 EKVQFKNLGLAIIDEEQRFGVEQRAKIWKKEDKFPHILIMTATPIPRTLAKIIYHDLNIS 436

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE---EKKESN---- 499
            I E P GRKP+KT+       D+  E +K  +S+G++ Y I P I    +KK  N    
Sbjct: 437 IIKELPLGRKPVKTIHFWNQNRDKAFEIIKNQISKGRQVYIIYPTINTSLKKKNMNLTKG 496

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           ++ + E+F +L     + I I+HG M+  +K   M  F  G  K+LIATTVIEVG++V +
Sbjct: 497 YQEIKEKFKNLE----NKIGILHGEMNFQEKNIQMSRFLRGETKILIATTVIEVGVNVPN 552

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           AS+I+IENA+ FGL+QLHQLRGRVGRG   S CIL+    +S   + R+  +  T +G  
Sbjct: 553 ASVILIENADFFGLSQLHQLRGRVGRGIHQSYCILITDQKISIEGFFRIKKMCETNEGLE 612

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
           IA+EDLK R  G+++G +QSG     I        L++     AK+   ++PD       
Sbjct: 613 IAKEDLKLRGGGDLIGTQQSGKNYLRIVNLIKDYKLIKDVFPIAKNFFIKNPDFLK---N 669

Query: 680 SIRILLYLYQYNEAFQ 695
           +  I    Y+ NE F+
Sbjct: 670 TKNIFYKNYKMNEKFK 685


>gi|315653368|ref|ZP_07906290.1| DNA helicase RecG [Lactobacillus iners ATCC 55195]
 gi|315489293|gb|EFU78933.1| DNA helicase RecG [Lactobacillus iners ATCC 55195]
          Length = 673

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 225/700 (32%), Positives = 367/700 (52%), Gaps = 45/700 (6%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  LS++            DLLFY P  +      P ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALSQL------KIKTIYDLLFYFPRRYDSLETFP-LNELK 58

Query: 66  EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I      S +     R  +K+ ++    +I ++ F+ +   LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175
            I + GK              Y+  +     + ++      E VYSL + +        I
Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFI 160

Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            +A+ + LP LPE I + L  K     +      +H P   KD +    A+    + E  
Sbjct: 161 SQAIEKYLPQLPEVIPQYLRDKYKLLDVKSMIIQMHQP---KDLQQVKIAQRTAIFLEFF 217

Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q+ L  L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   R
Sbjct: 218 VFQLQLSQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKR 277

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   
Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++T +     +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +
Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K     +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++ 
Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532
            +   L +G + Y + P I E  + + ++    +  +  +F S  +A++HG+M+   K  
Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMASSQKSD 517

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S C
Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGSTQSYC 577

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           I +  P  + N+  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     +
Sbjct: 578 IFVSDPK-TDNAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINN 636

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            ++   A+K++K ++ Q+P+L    G+    L  L +Y++
Sbjct: 637 YNIFTTAQKESKVLVNQNPELV---GEEYDFLKLLMEYDD 673


>gi|54026165|ref|YP_120407.1| ATP-dependent DNA helicase RecG [Nocardia farcinica IFM 10152]
 gi|54017673|dbj|BAD59043.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
          Length = 755

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 217/672 (32%), Positives = 354/672 (52%), Gaps = 80/672 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERI-VTITGYISQHSSFQLQKRRP--YKILLNDGTG 99
           DLL ++P  +  +  +P   E  E+   +T+ G I++     ++ RR    K+ L+ G+G
Sbjct: 31  DLLRHYPLRYATQG-QPLTEEAPEDGSHITVIGRIAKTELRPMRNRRGSLLKVQLDTGSG 89

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK-NRIIMVHPHYIF------------- 145
               + F+   + +K V  +G +  ++G +   +     + HP Y+              
Sbjct: 90  RPVDVTFF-NGDKVKYVVKQGLRAMMSGNVSYWRPGSWSLSHPGYLILPETEDESVGTMT 148

Query: 146 -----------------HNSQDVNFPLIEAVYSLPTGLSVDLFK--KIIVEALSRLPVLP 186
                                DV+F   E +   P    V  +     + + L +L  + 
Sbjct: 149 RVRGGGDLRGLAESAKGAAGVDVSFMSREFIPVYPATAKVQSWDLLACVRQVLEQLDPID 208

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + + +D+ +++    +++A  +IH P    D +    AR+RL +DE LA Q+ L   R +
Sbjct: 209 DPLPQDIREERGLLPVSDALRLIHLPEHRADIDR---ARDRLRFDEALALQLVLAERRHE 265

Query: 247 FKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
                    P   +G IA      +PF  T  Q+  I +I  D+++ + M R+LQG+VGS
Sbjct: 266 VSGRTARPCPPRADG-IAAAFAERLPFELTAGQQKVIGEISADLARTHPMHRLLQGEVGS 324

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI---------- 354
           GKT+VAL AM   V+AG Q  ++AP  +LA QHY  +           E+          
Sbjct: 325 GKTIVALHAMLQVVDAGQQCALLAPTEVLAAQHYRSLTAMLGELGTAGELGAAEHATRVV 384

Query: 355 -ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            +TG+M  + ++ AL     G+A I+IGTHAL QD+++++ L +VIVDEQHRFGV+QR  
Sbjct: 385 LVTGSMSASAKKAALLAAVTGEAGIVIGTHALIQDNVEFFDLGMVIVDEQHRFGVEQRDA 444

Query: 414 LTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP----IN 466
           L  KA A   PH+L+MTATPIPRT+ +T+LGD++ S +TE P GR PI + ++P     N
Sbjct: 445 LRAKAKAGASPHLLVMTATPIPRTIAMTTLGDLETSTLTELPRGRSPITSKVVPRKLHPN 504

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQI----------------EEKKESNFRSVVERFNSL 510
            +D   ER+   + +G++AY +C +I                EEK+    ++V++ F  L
Sbjct: 505 WVDRAWERILEEVGQGRQAYVVCSRIGDDEEGGRTAKGRKAAEEKEPPPTQAVLDVFEML 564

Query: 511 HEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                +S+   ++HGR+   +K+ VM +F  G   +L+ TTV+EVG+DV +A++++I +A
Sbjct: 565 RHGPLASVRVGLLHGRLPADEKDEVMRAFHEGAVDVLVCTTVVEVGVDVPNATVMVIVDA 624

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           + FG++QLHQLRGR+GRG     C+L+       ++ TRL  +  T DGF +A  DL+QR
Sbjct: 625 DRFGVSQLHQLRGRIGRGAHPGLCLLVTDAAPGGSAMTRLEAVAATNDGFELAVLDLRQR 684

Query: 629 KEGEILGIKQSG 640
           +EG++LG  QSG
Sbjct: 685 REGDVLGSAQSG 696


>gi|315502398|ref|YP_004081285.1| ATP-dependent DNA helicase recg [Micromonospora sp. L5]
 gi|315409017|gb|ADU07134.1| ATP-dependent DNA helicase RecG [Micromonospora sp. L5]
          Length = 733

 Score =  333 bits (854), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 220/706 (31%), Positives = 367/706 (51%), Gaps = 62/706 (8%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           VG++ +  L+  ++   A      DL+++ P  + +R     I  +     VT+   + +
Sbjct: 16  VGERTAKALAGHLDLHTAG-----DLIYHFPRRYDERGEHTDIRSLDVGEQVTVLAQVQR 70

Query: 79  HSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
            +   +++RR    ++ + DG+G +    F+      +     GR     GK+ + + + 
Sbjct: 71  TAVRPMRQRRGNLLEVTVGDGSGGVLTCTFFGNQAWRERELRPGRWGLFAGKVTEFRGKR 130

Query: 137 IMVHPHYIF---------------HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
            +  P Y+                        P+  A  ++PT +     + ++      
Sbjct: 131 QLNGPEYVLLGEGGEGEAAANEEVEEFAGALIPVYPAAAAVPTWVIARCVRVVLDTFTPP 190

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              LP  +       ++   I  A   IH P      E    AR RL +DE  A Q+ L+
Sbjct: 191 EDPLPATVRA----TRNLADIGTALREIHRPTSK---EALYRARRRLKWDEAFAVQLTLV 243

Query: 242 LMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +++     G     + G +       +P+  T  Q+   ++I  D+++ + M R+LQG
Sbjct: 244 QRKQRAAASPGRARPAKAGGLLDAFDARLPYELTSGQQVVGREIAADLARPHPMHRLLQG 303

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-----------KKYTQNTQ 349
           +VGSGKT+VAL AM   V+AGGQA ++AP  +LA QH+  I           +    +  
Sbjct: 304 EVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHHRGILDLLGPLGRAGELGAADDA 363

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
             VE++TG++  A RR+AL  +A G+A I++GTHAL  + + ++ L LV+VDEQHRFGV+
Sbjct: 364 TRVELVTGSLGAAARRRALAEVAEGRAGIVLGTHALLYEGVDFHDLGLVVVDEQHRFGVE 423

Query: 410 QRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           QR  L  KA   PHVL+MTATPIPRT+ +T  GD++ S +++ P GR PI + ++P    
Sbjct: 424 QRDALRAKAEQPPHVLVMTATPIPRTVAMTVYGDLETSTLSQLPQGRSPIASHVVPAAEK 483

Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQIEE---------KKESNFR----SVVERFNSLH 511
              +D    RL+  +++G +AY +CP+I E         +++ N R    +V E    L 
Sbjct: 484 PAFLDRAWRRLREEVTKGHQAYVVCPRIGEGPVSDEEPPREDDNGRRPPLAVTEVAPLLA 543

Query: 512 EHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           E       I ++HGR+   +K++VM ++ +G   +L+ATTV+EVG++V +A+++I+ +A+
Sbjct: 544 EGPLHGLRIGVLHGRLPADEKDAVMRAYADGELDVLVATTVVEVGVNVPNATVMIVLDAD 603

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            FG++QLHQLRGRVGRG     C+L+       ++  RL  + +T DGF +AE DL+QR+
Sbjct: 604 RFGVSQLHQLRGRVGRGSAAGLCLLVTEAAEGSSARERLDAVASTTDGFKLAELDLEQRR 663

Query: 630 EGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLT 674
           EG++LG  QSG    L     L D+ L+  AR +A  ++  DPDL+
Sbjct: 664 EGDVLGATQSGRRSHLRLLSLLRDTELIRDARAEAIELVEDDPDLS 709


>gi|94985241|ref|YP_604605.1| ATP-dependent DNA helicase RecG [Deinococcus geothermalis DSM
           11300]
 gi|94555522|gb|ABF45436.1| ATP-dependent DNA helicase RecG [Deinococcus geothermalis DSM
           11300]
          Length = 776

 Score =  333 bits (854), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 217/665 (32%), Positives = 355/665 (53%), Gaps = 25/665 (3%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL-------N 95
           D+L  +P    DR   P ++ + E + VT+ G +   +     +R+P   LL        
Sbjct: 126 DVLHAYPHRHEDRRALPDLAAVEEGQKVTVEGRVVTKA-----RRKPKPNLLIVEATLET 180

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM--VHPHYIFHNSQDVNF 153
              G +   +F +    ++    EG ++ +TG++K+    + +   H   +    + ++ 
Sbjct: 181 PAGGRVRASWFNQP--WVERQLREGARLVLTGRVKRFGRTVQLGVEHLETLEDARESLST 238

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
             I  VY    G+S +  +++   AL   P L +++     +++    +A+A   IH P 
Sbjct: 239 GRIVGVYDSKEGISQEFLRRVAFRALQAAP-LDDYLPAHWRRERGLTDLADALWGIHFPA 297

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                +    A  RL +DE L  ++ +LL + +    +G      G+  ++    +PF  
Sbjct: 298 GEAQLKR---ALHRLRFDEYLFLELRMLL-QGEDAVLLGKRFQATGEDIERFEAALPFRL 353

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q   + +I+ DM  + +M R++QGDVGSGKT VA  A+  AV  G Q  +MAP  IL
Sbjct: 354 TGAQRRVLLEIVADMRSERQMARLVQGDVGSGKTAVAAAALYLAVRDGYQGALMAPTEIL 413

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QHY  +  Y     + V ++ G M    + +   RIA G   +++GT AL Q+++++ 
Sbjct: 414 ARQHYANLLGYLAKLDVRVGLLIGAMTPKAKLEMQTRIAEGDVDVVVGTQALIQENVRFN 473

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L +VDE+HRFGV QR +L      P VL+M+ATPIPR+L LT+ GD+++S I E P 
Sbjct: 474 NLGLAVVDEEHRFGVMQRRRLL--TGRPDVLVMSATPIPRSLALTAYGDLELSVIDELPP 531

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GR P++T +I      +    +   + EG++AY +   IE+ +     +  +  + L   
Sbjct: 532 GRTPVETKLIQDTHRQQAYGFVMRQIREGRQAYVVTALIEQNENLELLAATQLADDLRVL 591

Query: 514 FTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + I ++HGRM+  +K+ VM+ F+     +L++TTVIEVG+DV +A++++IENAE FG
Sbjct: 592 LPEARIELLHGRMTAAEKDLVMERFRAREFDVLVSTTVIEVGVDVPNATVMVIENAERFG 651

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+QLHQLRGRVGRG   S CIL+     S  +  RL +++ + DGF+IAE DLK R  GE
Sbjct: 652 LSQLHQLRGRVGRGSAQSYCILIAGEH-SNKTRQRLKIIEGSTDGFVIAEADLKLRGPGE 710

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           + G +QSG+P   +        ++E AR  AKHIL  DP L   R + +R  L     + 
Sbjct: 711 LRGTRQSGIPDLRLGDLASDIEIIEQARALAKHILAHDPKLEHPRLRGLRQELQSRSQSV 770

Query: 693 AFQFI 697
           AF+ +
Sbjct: 771 AFREV 775


>gi|302344077|ref|YP_003808606.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
 gi|301640690|gb|ADK86012.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
          Length = 702

 Score =  333 bits (854), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 230/709 (32%), Positives = 360/709 (50%), Gaps = 36/709 (5%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETR-FIDLLFYHPSSFIDRHYRPKI 61
           P  L  L   L    GVG K    L+       A   R + D LF+ P  + DR     +
Sbjct: 11  PWALPALARSLGALPGVGPKTVQALA-------ARGLRTWGDGLFFLPPRYEDRRRVWPL 63

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             + E R+    G ++    +  ++ + ++++L+DG G + LL+F+ K   L+  F  GR
Sbjct: 64  DGLEEGRLCVARGRLTSSGPWG-RRGKVWRMVLDDGAGRLNLLWFHFKKAHLE-AFAVGR 121

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           ++   G+ +  +    MVHP        ++     +I  VY     L     ++ + +  
Sbjct: 122 EVFAVGRAELAEGGWRMVHPEVFDEQKAAEGRAVGVILPVYPELASLGQGGVRRFMADLA 181

Query: 180 SR-LPVLPEWIEKDLLQKKSFP-SIAEAFNIIHNPRKAKDFEW----TSPARERLAYDEL 233
            R + ++P+ +   LL  + +P S+++A    H P    D       TS  R  LA +EL
Sbjct: 182 GRTVDLIPDPL-FGLLPARLYPCSVSQALRQAHLPGPESDPAELDPPTSAWRRVLAVNEL 240

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
              Q+ L L R+Q     G+ ++  G + ++ L  +PF+ T+ Q  A+  IL DM+    
Sbjct: 241 FYYQLGLWLKRRQRLSRPGLVVDPPGALVERFLAALPFALTEGQNQALAAILADMASGRP 300

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+L GDVGSGKT+VAL A AA  EAG Q  +MAP  +LA+QH    +   +   +   
Sbjct: 301 MGRLLAGDVGSGKTVVALAAAAAVAEAGAQTALMAPTEVLARQHLASAQALLEPLGLKAA 360

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++ G    A  +K     A G A ++IGT A+    +++ +L LVI+DEQ RFGV QRL+
Sbjct: 361 LVLGGA-DAQGQKQARAAAQGGAALLIGTQAMLAARLEFERLGLVIIDEQQRFGVHQRLR 419

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K   PH+L+++ATPIPRT+ L   G +DIS + + P  R  I T ++   +  + +E
Sbjct: 420 LAAKGLDPHLLVLSATPIPRTMALALAGHLDISPLPQLPGRRPKIATTVLAFEQRRQAVE 479

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
            +   L+ G++ Y ICP +E   +      VE    L E+F   +I ++HGR+    ++ 
Sbjct: 480 AMAATLAAGEQVYVICPLVEASDKIQAHDAVETHRRLGEYFPGQAIGLLHGRLDSAAQQR 539

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            ++ F+ G  + L+ATTV+EVG+DV  A+++I+  AE FGL QLHQLRGRVGRG++   C
Sbjct: 540 ALEDFRAGQTRALVATTVVEVGLDVPAATLMIVLGAERFGLCQLHQLRGRVGRGQKPGRC 599

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ---- 648
            L+  P   +    RL VL  T DG  +AE DL  R  G+ LG  Q+G+P    A     
Sbjct: 600 CLVTGPEPGELGRRRLEVLAATADGLAVAEADLAMRGPGQALGAGQAGLPPLRFAGEVDL 659

Query: 649 -PELH---DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            PE+    D L    R D       D  L ++  +++R    L +  EA
Sbjct: 660 LPEVSRAVDGLFGQGRPD-------DEPLAALVAEAVRRWGRLMELVEA 701


>gi|237739914|ref|ZP_04570395.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 2_1_31]
 gi|229423522|gb|EEO38569.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 2_1_31]
          Length = 679

 Score =  333 bits (853), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 226/622 (36%), Positives = 343/622 (55%), Gaps = 17/622 (2%)

Query: 29  KIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR 88
           +++N  +       DL++Y P ++ +R     I +++    V +    S  S   +  R 
Sbjct: 13  QVVNLKSLGIDTIYDLIYYFPRAYDNRSNVKNIGDLTFNEYVVVKA--SVMSVLNMPNRS 70

Query: 89  PYKI---LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145
             KI   ++ DGTG + +L+F      +      G +    G+ KK  N    ++P Y  
Sbjct: 71  GKKIVKAMITDGTGIMEVLWF--GMPYISKSLKVGEEYIFIGQTKK-SNLFQFINPEYKL 127

Query: 146 HNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIA 203
           +  Q+      I  +YS    ++ +  +KII + L   L    E I  DL+  K +  I 
Sbjct: 128 YKGQEKETAKEILPIYSSNKSITQNNLRKIIKKFLENFLKYFEENIPNDLV--KGYKEIF 185

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI-- 261
           E    I N    +  +    A  R A +ELL  ++ +L  R            +EGK   
Sbjct: 186 ERTQAIKNIHFPESVQAIEAANLRFATEELLILELGILKNRFIIDSLNTKKYEIEGKKEK 245

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            +K L  +PF  T++Q+  IK+I  ++S    + R++QGDVGSGKT VA + +    E G
Sbjct: 246 VKKFLELLPFELTRAQKKVIKEIYDEISDGKIVNRLVQGDVGSGKTAVATVMLIYMAENG 305

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  +MAP  ILA QHY  +K+  +   + V ++T ++    + + LE IA+G   I+IG
Sbjct: 306 YQGALMAPTEILANQHYLGMKERLEKIGLRVGLLTSSIKGKKKTEILEAIANGDIDIVIG 365

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH+L +D++ + KL L+++DEQHRFGV QR KL +K    ++L+MTATPIPR+L L+  G
Sbjct: 366 THSLIEDNVVFKKLGLIVIDEQHRFGVNQRNKLREKGFLGNLLVMTATPIPRSLALSIYG 425

Query: 442 DIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           D+D+S I E P GR PIKT  I  ++ +  + + +   ++ G +AY++ P IE   +   
Sbjct: 426 DLDLSIIDELPPGRTPIKTKWIANDKDLSIMYDFIYKKVNSGNQAYFVAPLIETSDKMAL 485

Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           +SV +    +   F+   I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  
Sbjct: 486 KSVDKVSEEIERRFSDKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPA 545

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           ++I+ I NAE FGL+ LHQLRGRVGRG + S C L+     ++NS  RLS+++ TEDGF+
Sbjct: 546 STIMTIYNAERFGLSALHQLRGRVGRGSKQSYCFLISEST-TENSKQRLSIMEKTEDGFV 604

Query: 620 IAEEDLKQRKEGEILGIKQSGM 641
           IAEEDLK R  GEI G++QSG 
Sbjct: 605 IAEEDLKLRNSGEIFGLRQSGF 626


>gi|257457590|ref|ZP_05622757.1| ATP-dependent DNA helicase RecG [Treponema vincentii ATCC 35580]
 gi|257444976|gb|EEV20052.1| ATP-dependent DNA helicase RecG [Treponema vincentii ATCC 35580]
          Length = 641

 Score =  333 bits (853), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 176/420 (41%), Positives = 260/420 (61%), Gaps = 7/420 (1%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           ILR +PF+ T  Q++   +I  D+       R++QGDVGSGKTLVA +A    +E GGQA
Sbjct: 218 ILR-LPFTLTADQQAVTAEINADLDGTAPAARLIQGDVGSGKTLVAFLACLKVIEGGGQA 276

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           V+MAP  +LA+QH +   K  +   + +  +TGN+  A R + L+++A G   +IIGTHA
Sbjct: 277 VLMAPTELLARQHADNAAKLLEPLGVRLAFLTGNLKAAGRSQLLQQLASGNIDLIIGTHA 336

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-----TAPHVLLMTATPIPRTLVLTS 439
           LF     Y  L +V++DEQHRFGV QR  + QK       APH L+M+ATPIPRTL L+ 
Sbjct: 337 LFSAQTLYKNLRMVVIDEQHRFGVLQRSAIIQKGIDSGKKAPHFLMMSATPIPRTLALSM 396

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
            GD+DIS I   P GRKP+ T + P ++ ++V   +   +  GK+AY++ P IE+ +  +
Sbjct: 397 FGDLDISVIKTMPPGRKPVITYVAPESKAEKVYYFIGQDILAGKQAYFVYPIIEDSETLS 456

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            +S  + F  L   F    +A++H ++ + +  ++M  F+ G   +L+AT+VIEVG+DV 
Sbjct: 457 LKSAEDMFAELSRDFPHHRLALLHSKVPEDEARAIMQEFRAGAIHILVATSVIEVGVDVP 516

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A+ ++IE+A+ FGL+ LHQLRGR+GRG + + C LLY   +++    RL V+ +T DGF
Sbjct: 517 NATCMVIEHADRFGLSALHQLRGRIGRGSDQAYCFLLYGKNITETGKARLKVMASTTDGF 576

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
           +IAEEDLK R  G+I G++QSG   F +  P    +LLE AR  A  +L     LT   G
Sbjct: 577 VIAEEDLKLRGPGDIGGVEQSGYCGFELGDPIRDFALLEKARAAAFEMLAAQRGLTQHEG 636


>gi|294782998|ref|ZP_06748322.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 1_1_41FAA]
 gi|294479876|gb|EFG27653.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 1_1_41FAA]
          Length = 690

 Score =  333 bits (853), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 224/608 (36%), Positives = 338/608 (55%), Gaps = 17/608 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI---LLNDGTG 99
           DL++Y P ++ +R     I +++    V +    S  S   +  R   KI   ++ DGTG
Sbjct: 38  DLIYYFPRAYDNRSNVKNIGDLTFNEYVVVKA--SVMSVLNMPNRSGKKIVKAMVTDGTG 95

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEA 158
            + +L+F      +      G +    G+ KK  N    ++P Y  +  Q+      I  
Sbjct: 96  IMEVLWF--GMPYISKSLKVGEEYIFIGQTKK-SNLFQFINPEYKLYKGQEKETAEEILP 152

Query: 159 VYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           +YS    ++ +  +KII + L   L    E I  DL+  K +  I E    I N    + 
Sbjct: 153 IYSSNKSITQNTLRKIIKKFLENFLKYFEENIPNDLV--KGYKEIFERTQAIKNIHFPES 210

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTK 275
            +    A  R A +ELL  ++ +L  R            +EGK    +K L  +PF  T+
Sbjct: 211 VQAIEAANLRFATEELLILELGILKNRFIIDSLNTKKYEIEGKKEKVKKFLELLPFELTR 270

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q+  IK+I  ++S    + R++QGDVGSGKT VA + +    E G Q  +MAP  ILA 
Sbjct: 271 AQKKVIKEIYDEISDGKIVNRLVQGDVGSGKTAVATVMLIYMAENGYQGALMAPTEILAN 330

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY  +K+  +   + V ++T ++    + + LE I++G   I+IGTH+L +D++ + KL
Sbjct: 331 QHYLGMKERLEKIGLRVGLLTSSIKGKKKTEILEAISNGDIDIVIGTHSLIEDNVVFKKL 390

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L+++DEQHRFGV QR KL +K    ++L+MTATPIPR+L L+  GD+D+S I E P GR
Sbjct: 391 GLIVIDEQHRFGVNQRNKLREKGFLGNLLVMTATPIPRSLALSIYGDLDLSIIDELPPGR 450

Query: 456 KPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            PIKT  I  ++ +  + + +   ++ G +AY++ P IE   +   +SV +    +   F
Sbjct: 451 TPIKTKWIANDKDLSIMYDFIYKKVNSGNQAYFVAPLIETSDKMALKSVDKVSEEIERRF 510

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           +   I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  ++I+ I NAE FGL
Sbjct: 511 SDKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFGL 570

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           + LHQLRGRVGRG + S C L+     ++NS  RLS+++ TEDGF+IAEEDLK R  GEI
Sbjct: 571 SALHQLRGRVGRGSKQSYCFLI-SESTTENSKQRLSIMEKTEDGFIIAEEDLKLRNSGEI 629

Query: 634 LGIKQSGM 641
            G++QSG 
Sbjct: 630 FGLRQSGF 637


>gi|225621185|ref|YP_002722443.1| RecG-like DNA helicase [Brachyspira hyodysenteriae WA1]
 gi|225216005|gb|ACN84739.1| RecG-like DNA helicase [Brachyspira hyodysenteriae WA1]
          Length = 696

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 235/698 (33%), Positives = 360/698 (51%), Gaps = 55/698 (7%)

Query: 17  RGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74
           +GVG KY+  L+K  II           DL+ + P ++ DR    K+ E  E +  T   
Sbjct: 19  KGVGPKYAEILAKKGIIT--------LYDLIAFFPRTYDDRRKTLKLHEALENKDKTSVV 70

Query: 75  YIS--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK-IKK 131
           Y+     SSF  Q +    +++ DG     +  +  +   L     +G K+ +TGK I+ 
Sbjct: 71  YVEVIDVSSFTFQYKNKPLVIVTDGIAICEVPIYGGR---LPAGVSKGAKLYLTGKFIRS 127

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-----LP 186
            + ++      +   +S  +++  I  +Y L  GLS    + +IV+ L          +P
Sbjct: 128 GRGKLQCRMTEFEKPSSNALSYGKIVPIYPLTEGLSQKKLRTLIVDELVGFEKNMKYDIP 187

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
             I+K    K   PSI E    +H P     FE  + ARE L ++E L  Q   L  R+ 
Sbjct: 188 SVIKKKYRLKSFVPSIME----MHFP---TSFEALAEARESLIFEEFLTFQYIHLSERRP 240

Query: 247 FKKEIGIPINVEGKIAQKILRNI----PFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
                 I I  E   +  +L N+     F  T  Q  AI++I  D+    +M R+LQGDV
Sbjct: 241 -----NILIKEERYNSANLLDNVKSSLSFELTSDQLDAIEEIKNDLFSNKQMFRLLQGDV 295

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ----NTQIIVEIITGN 358
           G+GKT+VA +      E+G Q   +AP  ILA QHY   KK  +       I ++I+T +
Sbjct: 296 GAGKTIVAFLTALIPAESGFQTAFLAPTEILALQHYNTFKKLIKAAGLEDTIKIDILTSS 355

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           + Q  R   L+R+  G+++I++GTH++  D + +  L   IVDEQ RFG  QR KL  K 
Sbjct: 356 VNQNERGYLLKRLREGKSYILVGTHSIIYDEVIFKNLSYAIVDEQQRFGAAQRNKLLSKG 415

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                LLMTATPIP++L LT  G++D+S I   P+ RK + T    +   D   + LK  
Sbjct: 416 ENVDFLLMTATPIPQSLALTLFGELDLSIIKSMPSSRKGVLTKYKELYERDHCYKFLKSR 475

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDS 536
           +++G++ Y + P IE   +S+F ++   F    E + S I I  IHG+M D +KE +M+ 
Sbjct: 476 IAKGEQGYVVFPLIE-NNDSSFITLSSEFQRAKETYFSDIQIEVIHGKMKDEEKEYIMNR 534

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G  K+L +TTVIEVGID  +A+ I+IE AE FGL+QLHQLRGRVGRG+++  C L+ 
Sbjct: 535 FSSGEIKVLFSTTVIEVGIDNPNATTILIEGAERFGLSQLHQLRGRVGRGDKLGYCYLIL 594

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H  L+     R++++  T DGF I+E+DL+ R  GE LG +QSG+P F +        ++
Sbjct: 595 HSELNDIIKERINIICETTDGFKISEKDLELRGAGEFLGDRQSGIPDFKLGNIIKDKEIM 654

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
             A+ + + +L  +    +            Y+ NEAF
Sbjct: 655 RKAKDEMRSLLRDENSREA-----------FYKENEAF 681


>gi|262203090|ref|YP_003274298.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262086437|gb|ACY22405.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 752

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 207/670 (30%), Positives = 344/670 (51%), Gaps = 78/670 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEE-RIVTITGYISQHSSFQLQKRRPY--KILLNDGTG 99
           +LL Y P  ++ R  +   +E+ E    +TI G I++     ++KR  +  K+ + D   
Sbjct: 30  ELLHYTPRRYV-RQGQVSEAELPEAGEYLTIVGRITKADMIPMRKRSGHFLKVTVTDEAR 88

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD------VNF 153
                FF  +   ++     G ++ + G +K  + +I + HP ++     D      V  
Sbjct: 89  TYEATFFNPR--FIRTKLKPGARVMMAGTVKFFREQIQLSHPEWMVLPDGDPEVDRVVGS 146

Query: 154 PLIEAVYSLPTGLSVDL----------FKKIIV-------------------EALSRLPV 184
            ++  +Y++   L+ D           F + I+                     L+  P 
Sbjct: 147 AMLTEMYAVEAELTDDQDGAGADFLAQFDRPIIPMYPATRDIQTWDIWGAVRRVLAHRPQ 206

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             + + +    ++   + AEA   IH P    D    + A  RL +DE LA Q  L   R
Sbjct: 207 TADALSEADRNRRGLITTAEAIEKIHLPETDDDI---TAASARLKFDEALAIQTVLAQRR 263

Query: 245 KQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
              + E      +V G +  ++ + +PF  T  Q + + ++ +D++Q   M R+LQG+VG
Sbjct: 264 LAGRNESAAACPHVPGGLEDRLAQRLPFELTAGQRTVVGELGEDLAQNRPMSRLLQGEVG 323

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIV 352
           SGKTLV+L+AM   V+ G Q  I+AP  +LA QHY  ++                    +
Sbjct: 324 SGKTLVSLLAMLRVVDNGHQCAILAPTEVLAAQHYRTMRTMLGDLAEAGELSAAEGATSI 383

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+M    +R+ L  +  G A I++GTHAL +++++++ L +V+VDEQHRFGV+QR 
Sbjct: 384 ALLTGSMKTKGKRQTLLDVVTGTAGIVVGTHALLEENVEFFDLGMVVVDEQHRFGVEQRD 443

Query: 413 KL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467
            L    +    PH L+MTATPIPRT+ +T+ GD+D S + E P GR+PI T ++P+    
Sbjct: 444 VLRGRGRDGVMPHFLVMTATPIPRTVAMTAFGDLDTSVLRELPLGRQPITTNVVPMGNER 503

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR--------------SVVERFNSLHE 512
            ++ V  R    ++ G++ Y +C +I    E+                 SV++++ +L  
Sbjct: 504 WVERVWSRADEEIAAGRQVYVVCSRIGGDDETGGGKSGAAKNPEALKTISVLDQYEALLA 563

Query: 513 HFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  I ++HGR+   +K  VMD+F  G   +L+ATTVIEVG+DV +A++++I +AE 
Sbjct: 564 GPLGGHRIGLLHGRLPADEKNEVMDAFGRGELDILVATTVIEVGVDVPNATMMVIVDAER 623

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FG++QLHQLRGRVGRG+    C+L+   P    S  RL+ +  + DGF +A  DL+QR+E
Sbjct: 624 FGVSQLHQLRGRVGRGKHAGLCLLMTSAPQVSQSMQRLTAVAGSNDGFELARVDLQQRRE 683

Query: 631 GEILGIKQSG 640
           G++LG  QSG
Sbjct: 684 GDVLGSLQSG 693


>gi|223986081|ref|ZP_03636107.1| hypothetical protein HOLDEFILI_03415 [Holdemania filiformis DSM
           12042]
 gi|223961954|gb|EEF66440.1| hypothetical protein HOLDEFILI_03415 [Holdemania filiformis DSM
           12042]
          Length = 672

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 217/586 (37%), Positives = 334/586 (56%), Gaps = 35/586 (5%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKII--- 175
           G+++TV G  +   N+I         +NSQ +   L +  VY L  G++  + ++II   
Sbjct: 103 GQRVTVIGYYQG-GNKITATT-----YNSQPLQEQLGVTPVYPLKEGMTQKMMQEIIKKT 156

Query: 176 -VEALSRLP-VLPEWIEKD--LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
            + A S +  ++P  ++    LL KK+      A   +H PR     +    A   L Y+
Sbjct: 157 FITAQSHIEELVPPSLQAQYRLLPKKT------ALRCLHFPRS---MDEVYQATRTLKYE 207

Query: 232 ELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           E L   + L ++ R+Q +         + +    +  ++ F+ T  Q  A++DIL DM  
Sbjct: 208 EFLKFHLVLEMIHRQQTETVTKKAKQFDAEQVYALANHLSFAMTPDQFKAVRDILADMGS 267

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              M R++QGDVG GKTLVA +A+ A V +G Q  IMAP  ILA+QH   +KK      I
Sbjct: 268 DKIMYRLIQGDVGCGKTLVASLALYACVLSGHQGAIMAPTEILARQHAVSLKKLFAGLPI 327

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            ++++  ++P A +++ L+ +  G  +++ GTHALFQ  +++ KL LV+ DEQHRFGV+Q
Sbjct: 328 KIDVLCSSLPSAKKKEVLQAMKDGTLNLVAGTHALFQKEVEFAKLGLVVADEQHRFGVEQ 387

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           R  L +K      LLM+ATPIPRTL  T  GD+DIS I   P GRKPI+T ++  N +  
Sbjct: 388 RRALKEKGEKVDFLLMSATPIPRTLAATLYGDMDISTIMTMPPGRKPIQTRLVEENSLRT 447

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDI 528
           ++ +L   L +G + Y +C  IEE +  + R+V++ F SL E F+  + + ++HGRMS  
Sbjct: 448 IMPQLLDQLEQGGQIYIVCSAIEENENFDGRNVLDIFESLSEVFSGKAKLGLMHGRMSSE 507

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +KE  M  F+  T ++L++TTVIEVG++VV+A  ++I +A  FGL+QLHQLRGRVGRG  
Sbjct: 508 EKERAMFDFEANTTQILVSTTVIEVGVNVVNACCMVIYDAHRFGLSQLHQLRGRVGRGRR 567

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
              C LL        S  RL +++ T DGF IA +DL+QR  GE+LG +QSG+P  ++  
Sbjct: 568 QGYCFLLTASK-DPESLARLKIMEQTTDGFEIAMKDLEQRGPGELLGTRQSGVPGLILGD 626

Query: 649 PELHDSLLEIARKDAKHILTQDPD-------LTSVRGQSIRILLYL 687
                 +++ AR+DA  IL  DPD       LT +R ++   + Y+
Sbjct: 627 LVADTKIIQTARQDAVRILN-DPDNAEFQSLLTKIRKENESAISYM 671


>gi|121638855|ref|YP_979079.1| ATP-dependent DNA helicase RecG [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224991347|ref|YP_002646036.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|121494503|emb|CAL72984.1| Probable atp-dependent dna helicase recG [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224774462|dbj|BAH27268.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
          Length = 737

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 224/659 (33%), Positives = 352/659 (53%), Gaps = 68/659 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEE--RIVTITGYISQHSSFQLQK---RRPYKILLNDG 97
           DLL ++P S+++   R  I +   E    +TI   I+   SF ++K   R+  +I +  G
Sbjct: 31  DLLRHYPRSYVEGAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNRKCLRITVGGG 90

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
             ++T  FF    + +     +  K+ ++G++   K  + + HP ++  +S D       
Sbjct: 91  RNKVTATFF--NADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSPDGKNHGTR 148

Query: 158 AVYSLPTGLSVDLFKKIIVEALSR--LPVLP------EW-IEK------DLLQKKSFPSI 202
           ++ S+    S  +  +++VE   R   P+ P       W I K      D+L +   P  
Sbjct: 149 SLKSIADA-SKAISGELVVEEFERRFFPIYPASTKVQSWDIFKCVRQVLDVLDRVDDPLP 207

Query: 203 AE------------AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           AE            A   IH    A+       ARERL +DE +  Q AL+  R     E
Sbjct: 208 AELRAKHGLIPEDEALRAIH---LAESQSLRERARERLTFDEAVGLQWALVARRHGELSE 264

Query: 251 IGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTL 308
            G     +   +A ++LR +PF  T  Q   + D+L D    NR L R+LQG+VGSGKT+
Sbjct: 265 SGPSAAWKSNGLAAELLRRLPFELTAGQREVL-DVLSDGLAANRPLNRLLQGEVGSGKTI 323

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITG 357
           VA++AM   V+AG Q  ++AP  +LA QH   I+                    V ++TG
Sbjct: 324 VAVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRVALLTG 383

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           +M    +++    IA GQ  I+IGTHAL Q+++ ++ L +V+VDEQHRFGV+QR +L  K
Sbjct: 384 SMTAGQKKQVRAEIASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRDQLRAK 443

Query: 418 ATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDE 470
           A A   PH+L+MTATPIPRT+ LT  GD++ S + E P GR+PI T +I +      +D 
Sbjct: 444 APAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNVIFVKDKPAWLDR 503

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---------SIAII 521
              R+    + G++AY + P+I+E  +++ +  V    +    F+           +A++
Sbjct: 504 AWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGVRPSATAEGLFSRLRSAELAELRLALM 563

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HGR+S  DK++ M +F+ G   +L+ TTVIEVG+DV +A+++++ +A+ FG++QLHQLRG
Sbjct: 564 HGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQLHQLRG 623

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           R+GRGE  S C+L    P    +  RL  +  T DGF +A+ DLK+RKEG++LG  QSG
Sbjct: 624 RIGRGEHPSVCLLASWVPPDTPAGQRLRAVAGTMDGFALADLDLKERKEGDVLGRNQSG 682


>gi|15610110|ref|NP_217489.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis H37Rv]
 gi|15842526|ref|NP_337563.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis
           CDC1551]
 gi|31794150|ref|NP_856643.1| ATP-dependent DNA helicase RecG [Mycobacterium bovis AF2122/97]
 gi|148662822|ref|YP_001284345.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis H37Ra]
 gi|148824163|ref|YP_001288917.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis F11]
 gi|215404949|ref|ZP_03417130.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           02_1987]
 gi|215412817|ref|ZP_03421529.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           94_M4241A]
 gi|215428424|ref|ZP_03426343.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T92]
 gi|215431923|ref|ZP_03429842.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis EAS054]
 gi|215447241|ref|ZP_03433993.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T85]
 gi|253797935|ref|YP_003030936.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN
           1435]
 gi|254233059|ref|ZP_04926386.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis C]
 gi|254365610|ref|ZP_04981655.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254552051|ref|ZP_05142498.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187997|ref|ZP_05765471.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis CPHL_A]
 gi|260206297|ref|ZP_05773788.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis K85]
 gi|289448645|ref|ZP_06438389.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis CPHL_A]
 gi|289553237|ref|ZP_06442447.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN
           605]
 gi|289575680|ref|ZP_06455907.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis K85]
 gi|289746772|ref|ZP_06506150.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           02_1987]
 gi|289751650|ref|ZP_06511028.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T92]
 gi|289755089|ref|ZP_06514467.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis EAS054]
 gi|289759098|ref|ZP_06518476.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T85]
 gi|294993940|ref|ZP_06799631.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis 210]
 gi|297635597|ref|ZP_06953377.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis KZN
           4207]
 gi|297732595|ref|ZP_06961713.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis KZN
           R506]
 gi|298526443|ref|ZP_07013852.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           94_M4241A]
 gi|306777265|ref|ZP_07415602.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu001]
 gi|306781176|ref|ZP_07419513.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu002]
 gi|306785814|ref|ZP_07424136.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu003]
 gi|306789854|ref|ZP_07428176.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu004]
 gi|306794666|ref|ZP_07432968.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu005]
 gi|306798909|ref|ZP_07437211.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu006]
 gi|306804754|ref|ZP_07441422.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu008]
 gi|306808948|ref|ZP_07445616.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu007]
 gi|306969046|ref|ZP_07481707.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu009]
 gi|306973383|ref|ZP_07486044.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu010]
 gi|307081091|ref|ZP_07490261.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu011]
 gi|307085693|ref|ZP_07494806.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu012]
 gi|313659927|ref|ZP_07816807.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis KZN
           V2475]
 gi|54039023|sp|P64323|RECG_MYCBO RecName: Full=ATP-dependent DNA helicase recG
 gi|54041650|sp|P64322|RECG_MYCTU RecName: Full=ATP-dependent DNA helicase recG
 gi|1694858|emb|CAB05438.1| PROBABLE ATP-DEPENDENT DNA HELICASE RECG [Mycobacterium
           tuberculosis H37Rv]
 gi|13882836|gb|AAK47377.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis
           CDC1551]
 gi|31619745|emb|CAD96685.1| PROBABLE ATP-DEPENDENT DNA HELICASE RECG [Mycobacterium bovis
           AF2122/97]
 gi|124602118|gb|EAY61128.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis C]
 gi|134151123|gb|EBA43168.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506974|gb|ABQ74783.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis H37Ra]
 gi|148722690|gb|ABR07315.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis F11]
 gi|253319438|gb|ACT24041.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN
           1435]
 gi|289421603|gb|EFD18804.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis CPHL_A]
 gi|289437869|gb|EFD20362.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN
           605]
 gi|289540111|gb|EFD44689.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis K85]
 gi|289687300|gb|EFD54788.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           02_1987]
 gi|289692237|gb|EFD59666.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T92]
 gi|289695676|gb|EFD63105.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis EAS054]
 gi|289714662|gb|EFD78674.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T85]
 gi|298496237|gb|EFI31531.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214410|gb|EFO73809.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu001]
 gi|308326011|gb|EFP14862.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu002]
 gi|308329589|gb|EFP18440.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu003]
 gi|308333680|gb|EFP22531.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu004]
 gi|308337078|gb|EFP25929.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu005]
 gi|308340890|gb|EFP29741.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu006]
 gi|308344727|gb|EFP33578.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu007]
 gi|308348707|gb|EFP37558.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu008]
 gi|308353403|gb|EFP42254.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu009]
 gi|308357279|gb|EFP46130.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu010]
 gi|308361292|gb|EFP50143.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu011]
 gi|308364809|gb|EFP53660.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu012]
 gi|323718446|gb|EGB27619.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904587|gb|EGE51520.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis W-148]
 gi|328457710|gb|AEB03133.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN
           4207]
          Length = 737

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 224/659 (33%), Positives = 352/659 (53%), Gaps = 68/659 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEE--RIVTITGYISQHSSFQLQK---RRPYKILLNDG 97
           DLL ++P S+++   R  I +   E    +TI   I+   SF ++K   R+  +I +  G
Sbjct: 31  DLLRHYPRSYVEGAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNRKCLRITVGGG 90

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
             ++T  FF    + +     +  K+ ++G++   K  + + HP ++  +S D       
Sbjct: 91  RNKVTATFF--NADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSPDGKNHGTR 148

Query: 158 AVYSLPTGLSVDLFKKIIVEALSR--LPVLP------EW-IEK------DLLQKKSFPSI 202
           ++ S+    S  +  +++VE   R   P+ P       W I K      D+L +   P  
Sbjct: 149 SLKSIADA-SKAISGELVVEEFERRFFPIYPASTKVQSWDIFKCVRQVLDVLDRVDDPLP 207

Query: 203 AE------------AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           AE            A   IH    A+       ARERL +DE +  Q AL+  R     E
Sbjct: 208 AELRAKHGLIPEDEALRAIH---LAESQSLRERARERLTFDEAVGLQWALVARRHGELSE 264

Query: 251 IGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTL 308
            G     +   +A ++LR +PF  T  Q   + D+L D    NR L R+LQG+VGSGKT+
Sbjct: 265 SGPSAAWKSNGLAAELLRRLPFELTAGQREVL-DVLSDGLAANRPLNRLLQGEVGSGKTI 323

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITG 357
           VA++AM   V+AG Q  ++AP  +LA QH   I+                    V ++TG
Sbjct: 324 VAVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRVALLTG 383

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           +M    +++    IA GQ  I+IGTHAL Q+++ ++ L +V+VDEQHRFGV+QR +L  K
Sbjct: 384 SMTAGQKKQVRAEIASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRDQLRAK 443

Query: 418 ATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDE 470
           A A   PH+L+MTATPIPRT+ LT  GD++ S + E P GR+PI T +I +      +D 
Sbjct: 444 APAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNVIFVKDKPAWLDR 503

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---------SIAII 521
              R+    + G++AY + P+I+E  +++ +  V    +    F+           +A++
Sbjct: 504 AWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGVRPSATAEGLFSRLRSAELAELRLALM 563

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HGR+S  DK++ M +F+ G   +L+ TTVIEVG+DV +A+++++ +A+ FG++QLHQLRG
Sbjct: 564 HGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQLHQLRG 623

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           R+GRGE  S C+L    P    +  RL  +  T DGF +A+ DLK+RKEG++LG  QSG
Sbjct: 624 RIGRGEHPSVCLLASWVPPDTPAGQRLRAVAGTMDGFALADLDLKERKEGDVLGRNQSG 682


>gi|284032693|ref|YP_003382624.1| ATP-dependent DNA helicase RecG [Kribbella flavida DSM 17836]
 gi|283811986|gb|ADB33825.1| ATP-dependent DNA helicase RecG [Kribbella flavida DSM 17836]
          Length = 747

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 214/640 (33%), Positives = 336/640 (52%), Gaps = 65/640 (10%)

Query: 91  KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150
           K+++ DG  ++ L FF +    L N    G      G++   ++   +  P     + +D
Sbjct: 95  KVVVTDGRNDLELAFFNQP--WLANKLTPGTAALFWGEVTTFRDIRQLKGPGTEILDEED 152

Query: 151 VN-----------FPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKS 198
           ++            PL  A   LPT  +++   KI+++ L  +   +PE +    L  + 
Sbjct: 153 LSEAEIERRAKPFRPLYPATAKLPTA-TIERSIKIVLDNLEDVEDPIPELV----LANEK 207

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INV 257
              + EA   IH P   KD++    A++R  ++E L  Q  L   R        +P    
Sbjct: 208 LLGLREALQKIHLPETEKDWD---TAQQRFRFEEALVMQTILAQRRAVADALKAVPRKRT 264

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            G +       +PF  T+ Q     +I  D+++ + M R+LQG+VGSGKT+VAL AM + 
Sbjct: 265 PGGLLDDFDARLPFQLTEGQAEVCDEIFADLARPHPMHRLLQGEVGSGKTVVALRAMLSV 324

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRK 366
           V+AGGQAV++AP  +LA QH++ + K              +    V ++TG++  A RR 
Sbjct: 325 VDAGGQAVLLAPTEVLATQHHKTLTKMLGELAEAGMLGGADRATRVGLLTGSLNAASRRT 384

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--TAPHVL 424
           A+   A G A I++GTHAL +D +Q+  L LV+VDEQHRFGV+QR  L+ K+    PHVL
Sbjct: 385 AMLDAASGAAGIVVGTHALLEDKVQFADLGLVVVDEQHRFGVEQRAALSTKSGENTPHVL 444

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLS 480
           +MTATPIPRT+ +T  GD+ +S +TE PAGR PIK+ ++P       ++   +R++  + 
Sbjct: 445 VMTATPIPRTVAMTVFGDLAVSTLTELPAGRSPIKSSVVPAKEKPAWLERAWQRVREEVQ 504

Query: 481 EGKKAYWICPQIEE------KKESNFRSVVERFNSLHEHFTSSI---------------- 518
           +G +AY +CP+I +       +E  F +  E           +I                
Sbjct: 505 KGHQAYVVCPRIGDDVKNAGDEEGEFAAGGEDEGDAKSKPRPAISVLQVAEVLQQVLPDL 564

Query: 519 --AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             A++HGR+   +K++VM  F  G   +LIATTVIEVG+DV +AS +++ +A+ FG++QL
Sbjct: 565 RQAVLHGRLPAEEKDAVMSRFAAGEIDVLIATTVIEVGVDVPNASTMVVMDADRFGISQL 624

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG+    C+L+        S  RL  +  T DGF ++  DL+ R+EG++LG+
Sbjct: 625 HQLRGRVGRGKVPGLCLLVTDGWPGSKSRERLDAVAATTDGFELSRIDLENRREGDVLGV 684

Query: 637 KQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTS 675
            QSG    L     L D  ++  AR  A  +++ D DL  
Sbjct: 685 AQSGRRSSLKLLSVLRDEEVIYAARHVANSLVSVDADLAG 724


>gi|167970005|ref|ZP_02552282.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis H37Ra]
          Length = 1293

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 224/659 (33%), Positives = 352/659 (53%), Gaps = 68/659 (10%)

Query: 43   DLLFYHPSSFIDRHYRPKISEISEE--RIVTITGYISQHSSFQLQK---RRPYKILLNDG 97
            DLL ++P S+++   R  I +   E    +TI   I+   SF ++K   R+  +I +  G
Sbjct: 587  DLLRHYPRSYVEGAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNRKCLRITVGGG 646

Query: 98   TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
              ++T  FF    + +     +  K+ ++G++   K  + + HP ++  +S D       
Sbjct: 647  RNKVTATFF--NADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSPDGKNHGTR 704

Query: 158  AVYSLPTGLSVDLFKKIIVEALSR--LPVLP------EW-IEK------DLLQKKSFPSI 202
            ++ S+    S  +  +++VE   R   P+ P       W I K      D+L +   P  
Sbjct: 705  SLKSIADA-SKAISGELVVEEFERRFFPIYPASTKVQSWDIFKCVRQVLDVLDRVDDPLP 763

Query: 203  AE------------AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
            AE            A   IH    A+       ARERL +DE +  Q AL+  R     E
Sbjct: 764  AELRAKHGLIPEDEALRAIH---LAESQSLRERARERLTFDEAVGLQWALVARRHGELSE 820

Query: 251  IGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTL 308
             G     +   +A ++LR +PF  T  Q   + D+L D    NR L R+LQG+VGSGKT+
Sbjct: 821  SGPSAAWKSNGLAAELLRRLPFELTAGQREVL-DVLSDGLAANRPLNRLLQGEVGSGKTI 879

Query: 309  VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITG 357
            VA++AM   V+AG Q  ++AP  +LA QH   I+                    V ++TG
Sbjct: 880  VAVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRVALLTG 939

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +M    +++    IA GQ  I+IGTHAL Q+++ ++ L +V+VDEQHRFGV+QR +L  K
Sbjct: 940  SMTAGQKKQVRAEIASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRDQLRAK 999

Query: 418  ATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDE 470
            A A   PH+L+MTATPIPRT+ LT  GD++ S + E P GR+PI T +I +      +D 
Sbjct: 1000 APAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNVIFVKDKPAWLDR 1059

Query: 471  VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---------SIAII 521
               R+    + G++AY + P+I+E  +++ +  V    +    F+           +A++
Sbjct: 1060 AWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGVRPSATAEGLFSRLRSAELAELRLALM 1119

Query: 522  HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            HGR+S  DK++ M +F+ G   +L+ TTVIEVG+DV +A+++++ +A+ FG++QLHQLRG
Sbjct: 1120 HGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQLHQLRG 1179

Query: 582  RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
            R+GRGE  S C+L    P    +  RL  +  T DGF +A+ DLK+RKEG++LG  QSG
Sbjct: 1180 RIGRGEHPSVCLLASWVPPDTPAGQRLRAVAGTMDGFALADLDLKERKEGDVLGRNQSG 1238


>gi|310828885|ref|YP_003961242.1| ATP-dependent DNA helicase RecG [Eubacterium limosum KIST612]
 gi|308740619|gb|ADO38279.1| ATP-dependent DNA helicase RecG [Eubacterium limosum KIST612]
          Length = 683

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 225/661 (34%), Positives = 340/661 (51%), Gaps = 43/661 (6%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR------PYKILLND 96
           +LL ++P  +++R     +   +EE  VT+    ++  + +  +R       P    L +
Sbjct: 31  ELLDFYPRKYLNRKIMGSLQTETEE-AVTVKAVAAKRGALRRIRRNMSLFVLPVVETLEN 89

Query: 97  G---TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           G    GEI           L++VF E       G++    NR  M +P +  H S+  +F
Sbjct: 90  GESVKGEIVWF----NQPYLRDVFSENETYYFFGRVVIKNNRRQMYNPQFA-HESKLEDF 144

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
            ++  VY    G+  +  KK +     +  ++ + +     ++        A   IH P 
Sbjct: 145 FILTPVYPKIEGIPRESLKKYMASVFRQHLLIRDDLPACYRERYHLLPKEAALEKIHFPD 204

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA-------QKIL 266
             +D       + R+ ++E L   I ++  R          +N   KI+       ++  
Sbjct: 205 TPQD---VVEGKGRIKFEEALKINIGIMNSR---------ALNGVSKISLDNFEALRRFT 252

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           + +PF  T SQ S + DI  DM +   M R++QGDVGSGKT++A+         G Q   
Sbjct: 253 KGLPFELTASQLSVLDDIAGDMKKGIVMNRLVQGDVGSGKTIIAVACAYLMALNGYQTAY 312

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  ILA QH    ++Y +   I VE++TG+     R    + IA G+A +IIGTHAL 
Sbjct: 313 MAPTEILAGQHAANFRQYLEPYGICVELLTGSQKTKERNAVTKTIASGEAQVIIGTHALI 372

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           QDS+ YY L LVI DEQHRFGV+QR KL  K   PH L+M+ATPIPRTL L   GD+D+S
Sbjct: 373 QDSVDYYNLGLVITDEQHRFGVKQRGKLGLKGEMPHTLVMSATPIPRTLALILYGDLDVS 432

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVE 505
            I E P GRK IKT         +++  +   + +G++A+ ICP IEE +E S  + +  
Sbjct: 433 YIDELPKGRKKIKTYFYNEKSYPKILSFMANEMDKGRQAFVICPFIEESEEMSEVKDIQS 492

Query: 506 RFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            F  + + + S   IA ++ RMS  DK+ ++D+F      LL+AT++IEVGIDV + S+I
Sbjct: 493 VFAEVKQFYGSRYRIACLYSRMSGEDKKQIIDAFNRCEIDLLVATSIIEVGIDVPNVSVI 552

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIA 621
            I +A+ FGL+QLHQLRGRVGRG   S C L+ +   S+N  T  R+ V+ N   G  IA
Sbjct: 553 TILSADRFGLSQLHQLRGRVGRGMHQSYCFLVSN---SRNDQTIERMRVIVNNHSGKKIA 609

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL-TQDPDLTSVRGQS 680
           +ED + R  G+  G+KQ G P+F    P     L+   +K AK I  + D +  + R + 
Sbjct: 610 DEDYRLRGPGDYFGMKQHGFPEFKALNPYEDFDLISETKKVAKEIYHSGDKETMAYRARI 669

Query: 681 I 681
           I
Sbjct: 670 I 670


>gi|88856719|ref|ZP_01131374.1| ATP-dependent DNA helicase RecG [marine actinobacterium PHSC20C1]
 gi|88814016|gb|EAR23883.1| ATP-dependent DNA helicase RecG [marine actinobacterium PHSC20C1]
          Length = 724

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 226/698 (32%), Positives = 368/698 (52%), Gaps = 55/698 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100
           DL+ + P  +  R     ++++  +  VTI   + +  +  ++ +R    ++ ++DGTG 
Sbjct: 32  DLMTHFPRRYARRGELTALAQLPLDEAVTIVAEVREVRNRPMRNKRGSILEVSISDGTGI 91

Query: 101 ITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
           +TL FF   +R  E+   V    R I   GK+ + +    + HP Y   +   +     E
Sbjct: 92  LTLTFFNQAWRANELSPGV----RGI-FAGKVGQYRGTRQLAHPDYELFDRDALELKKPE 146

Query: 158 ----------AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207
                      +Y   + ++    +K +   L  L  L + +   + +++     A+A  
Sbjct: 147 QAKAWAEQPIPIYPATSTVASWQIQKAVEVVLDTLGPLDDPVPDAVRRERELLPFAKALE 206

Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
            +H P+   D +W + AR+ L + E    Q ALL  R++ ++   I     G + +    
Sbjct: 207 SVHRPKV--DSDWRT-ARDALRFQEAFVLQSALLQQRQKQRESEAI-ARTAGSLLEAFDA 262

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +PF  T  Q++  + I +DM++   M R++QG+VGSGKTLVAL AM A  ++GGQ+ ++
Sbjct: 263 ALPFVLTGDQQTVGEQIFRDMAEPVPMNRLVQGEVGSGKTLVALRAMLAVAQSGGQSALL 322

Query: 328 APIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           AP  +LA QH+  I +      + Q+   IITG +P A R+KAL     G + ++IGTHA
Sbjct: 323 APTEVLAHQHFRSIVRTLGPDLSAQLRPTIITGQLPTAERKKALLASVSGASRLVIGTHA 382

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDI 443
           L  D++ +  L LV+VDEQHRFGV QR  L  K +  PHVL++TATPIPRT+ +T  GD+
Sbjct: 383 LLGDAVSFVDLGLVVVDEQHRFGVDQREALRLKGSKPPHVLVLTATPIPRTVAMTVFGDL 442

Query: 444 DISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
           DIS I E PAGR+PI + ++P+      +  V ERL   L+ G++ + +CP I+ K E  
Sbjct: 443 DISSIAELPAGRQPISSHVVPLAEKPGWVSRVWERLAEELAVGRQGFVVCPAIDAKTEEP 502

Query: 498 --------------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
                               +N   V+    S        I  +HG++S  +K+ +M +F
Sbjct: 503 GTEPVPSSADDPDAGPPRPIANVTEVLASLRSNSVLAGKRIEALHGKLSSDEKDELMRAF 562

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G   +L+ATTVIEVG+DV +AS++++ +A+ FG++QLHQLRGRVGRG     C+ +  
Sbjct: 563 AAGDIDVLVATTVIEVGVDVPNASVMVVLDADRFGVSQLHQLRGRVGRGGVPGLCLFVTA 622

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LL 656
             +   +  R+  + +T DGF +A +DL+ R+EG++LG  QSG    L      +D  L+
Sbjct: 623 AEVESLARERVEAVASTLDGFELANKDLELRREGDVLGGVQSGGRSSLKLLRVANDGQLI 682

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
             AR+ A+ +L  DP L      +  +   L + +EAF
Sbjct: 683 TEAREAAQAVLADDPTLAEHPALAAALKRRLDESSEAF 720


>gi|323359687|ref|YP_004226083.1| RecG-like helicase [Microbacterium testaceum StLB037]
 gi|323276058|dbj|BAJ76203.1| RecG-like helicase [Microbacterium testaceum StLB037]
          Length = 729

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 227/682 (33%), Positives = 350/682 (51%), Gaps = 61/682 (8%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100
           +LL ++P  +  R     IS +     VTI   +   S  ++Q RR    +++++DG G 
Sbjct: 33  ELLEHYPRRYARRGELTPISTLPLGEPVTIVAEVVSASERRMQNRRGSLLEVVISDGDGR 92

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHN----------SQ 149
           ++L FF +    LK+    GR+   +GK+ + + +  + +P Y +F +          S 
Sbjct: 93  LSLTFFNQPWR-LKD-LTPGRRGIFSGKVGEYRRQTQLTNPDYELFDDLAEARAEAEVSA 150

Query: 150 DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209
               P+  A  ++P+     L +K I   L  L  + + +  DL  ++       A   I
Sbjct: 151 KRPIPIYPATATVPS----PLVQKTISLVLDALGDIDDPLPDDLRARRGLLPARTALEQI 206

Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN--VEGKIAQKILR 267
           H P    D     PA   L   E    Q ALL  R QF + +         G + ++  R
Sbjct: 207 HRPEDDDDI---PPAVATLRMQEAFVLQTALLQQR-QFVRALSATKRPAAPGGLLERFDR 262

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +PF  T  Q+S    I  DM     M R++QG+VGSGKTLVAL AM    E GGQ+ ++
Sbjct: 263 ILPFELTPDQQSVGAQIQADMVGDWPMNRLVQGEVGSGKTLVALRAMLQVAETGGQSALI 322

Query: 328 APIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           AP  +LA QH   I +        +++  ++TG +P A RRKA  R+A GQA I++GTHA
Sbjct: 323 APTEVLAAQHLRSIARMLGPELAPELMPTLLTGQLPAAERRKAALRVASGQARIVVGTHA 382

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L   +  +  L  V+VDEQHRFGV QR  L  K  +PH +++TATPIPRT+ +T  GD+D
Sbjct: 383 LLSSTTTFADLGFVVVDEQHRFGVDQREALRAKGDSPHTIVLTATPIPRTVAMTVFGDLD 442

Query: 445 ISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIE------- 493
           +S I   PAGR  I++ + P+    +    V +R+   +++G++A+ +C  I+       
Sbjct: 443 VSTIRTMPAGRAGIQSFVAPLAEKPSWFARVWDRVAEEVAQGRQAFVVCAAIDADQLAAD 502

Query: 494 -------------------EKKESNFRSV-VERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
                              + + + +  V VE   S    FT   + I+HG+M   +K++
Sbjct: 503 DKTDEPADAPEGPASAAASDGQRTRWGVVQVEALLSRLPAFTGIRVEILHGKMPSDEKDA 562

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM +F  G   +L+ATTVIEVG+DV +AS ++I  A+ FG++QLHQLRGRVGRG     C
Sbjct: 563 VMQAFARGDIDVLVATTVIEVGVDVPNASTMVILEADRFGVSQLHQLRGRVGRGGLPGLC 622

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +L+       +S  R+  +  T DGF +AE DL+ R EG++LG  QSG+   L     + 
Sbjct: 623 LLVTEAAPGTSSRARVDAVAATLDGFALAEVDLELRGEGDVLGGAQSGVRSSLRLLRVVT 682

Query: 653 DS-LLEIARKDAKHILTQDPDL 673
           D+ L+  AR + + +L  DP L
Sbjct: 683 DADLITEARAEGERLLADDPAL 704


>gi|148272534|ref|YP_001222095.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830464|emb|CAN01399.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 727

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 223/685 (32%), Positives = 355/685 (51%), Gaps = 67/685 (9%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100
           DLL + P  +  R     ++E+  ++  TI   + +     ++ RR    ++ + DG G 
Sbjct: 31  DLLEHLPRRYARRGELTALAELPVDQQATIVAEVREVRERPMRARRGSILEVRITDGRGF 90

Query: 101 ITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD------- 150
           +TL FF   +R  +++  V     +    GK+   +  + + HP Y   ++ +       
Sbjct: 91  LTLTFFNQAWRAKDLVPGV-----RGIFAGKVSDYRGALQLAHPDYELFDAHEGPELSGG 145

Query: 151 ---------VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPS 201
                       P+   +Y     ++     K +  AL  +  L + +  D+  ++    
Sbjct: 146 EPDAAARRWAEMPI--PIYPATASMASWQVAKSVELALDAVDDLEDPVPADVRAERGLLP 203

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGK 260
             EA   +H P K  D +W    R+ L + E    Q ALL  R+  +     P I   G 
Sbjct: 204 YREALEGVHRPEK--DVDWKR-GRDALRFQEAFVLQTALLQRRQAARALPATPRIPTAGG 260

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
              ++   +PF  T  Q    ++I  DM++   M R++QG+VGSGKTLVAL AM A  + 
Sbjct: 261 HLDRLDAQLPFELTGDQRLVGEEIATDMARTWPMNRLVQGEVGSGKTLVALRAMLAVADT 320

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           GGQ+ ++AP  +LA QH   +          +++  ++TG +  A R++AL RI  GQA 
Sbjct: 321 GGQSALLAPTEVLASQHLRSLTASLGPDLAAELMPTLLTGQLSTAERKRALLRIVSGQAR 380

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLV 436
           I++GTHAL  D +++  L LV+VDEQHRFGV QR  L +K  T PHVL++TATPIPRT+ 
Sbjct: 381 IVVGTHALLGDRVEFLDLGLVVVDEQHRFGVDQREALRRKGGTPPHVLVLTATPIPRTVA 440

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQI 492
           +T  GD+D+S I E P+GR+P+++ ++P++     I+ V ER    + +G++A+ +CP I
Sbjct: 441 MTVFGDLDVSTIAELPSGRQPMESFVVPLHEQPRWIERVWERTAEEIQKGRQAFVVCPAI 500

Query: 493 EEKKESNFR-------------------SVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           + +                         + V+   + H    S   A++HGRMS  +K+ 
Sbjct: 501 DPQDPDAEDEDAAEGADDAATRPALATVTEVDALLAAHPRLGSVRRAVLHGRMSGEEKDR 560

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM +F  G   L++ATTVIEVG+DV +AS ++I +A+ FG++QLHQLRGRVGRG     C
Sbjct: 561 VMRAFSAGDIDLIVATTVIEVGVDVPNASTMVILDADRFGVSQLHQLRGRVGRGGVPGLC 620

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL----IAQ 648
           +++ H      +  R+  +  T DGF +A  DL+ R+EG++LG  QSG    L    +AQ
Sbjct: 621 LMVTHAEPETVARERVDAVAATLDGFELARVDLELRREGDVLGTNQSGGRSSLRLLRVAQ 680

Query: 649 PELHDSLLEIARKDAKHILTQDPDL 673
                 L+E AR+ A  +L   PDL
Sbjct: 681 ---DGDLIESAREHAHDVLEASPDL 702


>gi|262066091|ref|ZP_06025703.1| ATP-dependent DNA helicase RecG [Fusobacterium periodonticum ATCC
           33693]
 gi|291380186|gb|EFE87704.1| ATP-dependent DNA helicase RecG [Fusobacterium periodonticum ATCC
           33693]
          Length = 690

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 225/608 (37%), Positives = 337/608 (55%), Gaps = 17/608 (2%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI---LLNDGTG 99
           DL++Y P ++ +R     I  ++    V +    S  S   +  R   KI   ++ DGTG
Sbjct: 38  DLIYYFPRAYDNRSNVKSIGNLTFNEYVVVKA--SVMSVLNMPNRSGKKIVKAIITDGTG 95

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEA 158
            + +L+F      +      G +    G+ KK  N    ++P Y  +  Q+      I  
Sbjct: 96  IMEVLWF--GMPYISKSLKVGEEYIFIGQTKK-SNLFQFINPEYKLYKGQEKETSKEILP 152

Query: 159 VYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           +YS    ++ +  +KII + L   L    E I  DL+  K +  I E    I N    + 
Sbjct: 153 IYSSNKSITQNNLRKIIKKFLENFLKYFEENIPNDLV--KGYKEIFERTQAIKNIHFPES 210

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTK 275
            +    A  R A +ELL  ++ +L  R            +EGK    +K L  +PF  T+
Sbjct: 211 VQAIEAANLRFATEELLILELGILKNRFIVDSLNTKKYEIEGKKEKVRKFLELLPFELTR 270

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q+  IK+I  ++S    + R++QGDVGSGKT VA + +    E G Q  +MAP  ILA 
Sbjct: 271 AQKKVIKEIYDEISDGKIVNRLVQGDVGSGKTAVATVMLIYMAENGYQGALMAPTEILAN 330

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY  +K+  +   + V ++T ++    + + LE IA+G   I+IGTH+L +D++ + KL
Sbjct: 331 QHYLGMKERLEKIGLRVGLLTSSIKGKKKTEILEAIANGDIDIVIGTHSLIEDNVVFKKL 390

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L+++DEQHRFGV QR KL +K    ++L+MTATPIPR+L L+  GD+D+S I E P GR
Sbjct: 391 GLIVIDEQHRFGVNQRNKLREKGFLGNLLVMTATPIPRSLALSIYGDLDLSIIDELPPGR 450

Query: 456 KPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            PIKT  I  ++ +  + + +   ++ G +AY++ P IE   +   +SV +    +   F
Sbjct: 451 TPIKTKWIANDKDLSIMYDFIYKKVNSGNQAYFVAPLIETSDKMALKSVDKVSEEIERRF 510

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           +   I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  ++I+ I NAE FGL
Sbjct: 511 SDKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFGL 570

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           + LHQLRGRVGRG + S C L+     ++NS  RLS+++ TEDGF+IAEEDLK R  GEI
Sbjct: 571 SALHQLRGRVGRGSKQSYCFLISEST-TENSKQRLSIMEKTEDGFVIAEEDLKLRNSGEI 629

Query: 634 LGIKQSGM 641
            G++QSG 
Sbjct: 630 FGLRQSGF 637


>gi|315445121|ref|YP_004078000.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. Spyr1]
 gi|315263424|gb|ADU00166.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. Spyr1]
          Length = 753

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 228/709 (32%), Positives = 365/709 (51%), Gaps = 90/709 (12%)

Query: 43  DLLFYHPSSFIDRHYRPKISE---ISEERIVTITGYISQHSSFQLQKRRPYK----ILLN 95
           DL+ Y P  + D        E   + E   VT    I++ +  +  + +P +    + L 
Sbjct: 31  DLVRYFPRKYSDAMTVRGEGEDLDLEEGEHVTFVDVIAR-AELKRVRNQPSREFLVVTLR 89

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS---QDVN 152
           D   ++T  FF  K   LK    EG K+ ++G++   +  + + HP ++  +S   + V 
Sbjct: 90  DRRPKVTATFFNPK--WLKKTLVEGTKVMLSGEVGYFRGTMQLTHPAFMVLDSASGKTVG 147

Query: 153 FPLIEAVYSLPTGLSVDL---FKK-------------------IIVEALSRLPVLPEWIE 190
              + ++ S       DL   F+K                    + +AL+ L  +PE + 
Sbjct: 148 TKSLTSIASTSGATGDDLLAEFEKNYFPIYAATSKVQTWDIYACVRQALAVLDPVPETLP 207

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
              +++    S  EA   +H    A+D    + A ERL +DE    Q  L++ R      
Sbjct: 208 DCFVREHDLMSEDEALRAVHLSENAED---RARAIERLTFDEAAGLQWGLVVRRNSELGA 264

Query: 251 IGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
            G P     G +   +   +PF  T  Q+  +  I +++     M R+LQG+VGSGKT+V
Sbjct: 265 SGPPAPRRGGGLVDAMTAQLPFELTAGQQEVLAVISEELGAARPMNRMLQGEVGSGKTVV 324

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIIT 356
           +L+AM   ++AG Q  ++AP  +LA QH   I+                Q T+  V ++T
Sbjct: 325 SLLAMLQMIDAGYQCALLAPTEVLAAQHASSIRSMLGALAGAGELGGAEQATR--VSLLT 382

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+M  A +R A   +A G A I+IGTHAL  DS+++  L +V+VDEQHRFGV+QR +L  
Sbjct: 383 GSMSAAQKRDARREVASGVAGIVIGTHALLSDSVEFDNLGMVVVDEQHRFGVEQRDRLRA 442

Query: 417 KATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----ID 469
           KA A   PH+L+MTATPIPRT+ LT  GD++ S + E P GR+PI T  I I      +D
Sbjct: 443 KAPAGLTPHLLVMTATPIPRTVALTIYGDLETSTLRELPRGRRPITTNTIFIRDKPAWLD 502

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEK-----------------KESNFR-----SVVERF 507
               R+   ++ G++AY +  +I+E                   ES+ +     +VV+  
Sbjct: 503 RAWTRIAEEVAAGRQAYVVASRIDENDTADGKADGKAKKAKKTSESDQQGPPPVTVVDLL 562

Query: 508 NSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             L     S +   ++HGR+S  +K++VM +F+ G   +L+ TTVIEVG+DV +A+++++
Sbjct: 563 ARLQRGPLSGVRLGLMHGRLSGDEKDAVMAAFRAGDIDVLVCTTVIEVGVDVPNATVMVV 622

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            +A+ FG++QLHQLRGR+GRGE  S C+L  + P S  +  RL+ +  T+DGF +AE DL
Sbjct: 623 MDADRFGISQLHQLRGRIGRGEHPSLCLLATNLPESSKAGQRLTAVAATQDGFELAELDL 682

Query: 626 KQRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDP 671
           ++R EG++LG+ QSG P   +FL      H  ++  AR+  + +   DP
Sbjct: 683 RERSEGDVLGLFQSGRPVTLRFLSLAD--HVEIILSARELCETVYASDP 729


>gi|294791347|ref|ZP_06756504.1| ATP-dependent DNA helicase RecG [Scardovia inopinata F0304]
 gi|294457818|gb|EFG26172.1| ATP-dependent DNA helicase RecG [Scardovia inopinata F0304]
          Length = 757

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 234/711 (32%), Positives = 362/711 (50%), Gaps = 81/711 (11%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI------ 92
           T   D LFY+P    D      + ++   +       + +     +  RR Y++      
Sbjct: 28  TTVADALFYYPFRVTDPVKCCTLRQVKIGQKAAFAATVRRIRVVPMNARRGYRVEVQVDD 87

Query: 93  --LLNDGTGE----ITLLFF-YRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
             L+N   G+     T  FF Y+K   + L +   +GR +  +G+     N +   HP  
Sbjct: 88  ADLVNPSAGQYEGYATFTFFTYKKHYADWLLSRLKKGRTLVASGEASLYGNNLQFTHPEI 147

Query: 144 IF------HNSQDV--------NFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
           +        +S DV             + +Y   + +S     + I+  L  L   +P+ 
Sbjct: 148 LTVAEPGQEDSADVASLEEGIHQLSRPQPIYHANSRISSAHIHESILGILQSLQDPIPDV 207

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           I ++L    +F   ++A   IHNP    +F W   +  R  Y+E L  Q ALL  R++ +
Sbjct: 208 IPEEL--SGTFMHRSQALMAIHNPHSIDEF-WRGISTMR--YEEALVSQTALLQEREKMQ 262

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
                 I  E  + +K + ++PF  T  QE  I  I  DM +   M R+LQG+VGSGKT+
Sbjct: 263 SSDSY-ICTETSLTEKFIHSLPFDLTSGQEEVISQIQTDMGRDYPMSRLLQGEVGSGKTV 321

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRK 366
           VAL A+  A  +G QAV++AP  +LA+QHY+ I    Q  +I + ++  TG M  A RR+
Sbjct: 322 VALAALLQAASSGYQAVLVAPTQVLARQHYQVIASMLQKAEIDLPLVLLTGGMHLADRRQ 381

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLL 425
           AL   A G   I++ THA F  + Q   + L ++DEQHRFGV+QR K+ ++++A PH+L+
Sbjct: 382 ALAIPASGVPCIVVATHAAFSSTFQAPHVALEVIDEQHRFGVEQREKMREESSAIPHLLV 441

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEG 482
           MTATPIPR+  +T  G++DIS +TE P GR+PI +V+I  N    + ++   ++  L  G
Sbjct: 442 MTATPIPRSAAMTWFGNLDISWLTELPQGRQPITSVVIEENDSQIMGQMFAHIRHRLDAG 501

Query: 483 KKAYWICPQIEEKKESN-----------------------------------FRSVVE-- 505
           ++AY ICP+I++ ++++                                     SV E  
Sbjct: 502 ERAYVICPRIDDSQDADSANGGRDGTEETDTIDLLSYDADGMLADDQERERPLHSVSEIA 561

Query: 506 -RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            R   L +     IA + GR  D  K+ VM  F +GT  LL+ATTVIEVG+DV +AS I+
Sbjct: 562 ARLAGLPQFSGIQIATLTGRDDDETKDQVMKDFSSGTSPLLVATTVIEVGVDVPEASCIV 621

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           + +A+ FGL+QLHQLRGRVGRG+  S    +   P    +  RL V+++T DG  IA+ D
Sbjct: 622 VFDADRFGLSQLHQLRGRVGRGKSRSWAFFISRAPQDSLAAQRLEVIRSTSDGAKIAQAD 681

Query: 625 LKQRKEGEILGIKQS-GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           L+ R  G++LG  QS G   F + +      ++  ARKDA ++L  DP+L+
Sbjct: 682 LELRGAGDVLGDAQSGGRTSFKLLRVVKDADIISSARKDADNVLVSDPNLS 732


>gi|328947379|ref|YP_004364716.1| ATP-dependent DNA helicase RecG [Treponema succinifaciens DSM 2489]
 gi|328447703|gb|AEB13419.1| ATP-dependent DNA helicase RecG [Treponema succinifaciens DSM 2489]
          Length = 728

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 239/738 (32%), Positives = 368/738 (49%), Gaps = 89/738 (12%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR-PKISEI 64
           L+ L A + T  GVG   +   + +      N     DLL   P  + DR  R P    +
Sbjct: 3   LSELGAAVETLSGVGPAAAKKFASL------NIFTVADLLSVFPRDYEDRTKRIPLRDYV 56

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           +  ++ TI   ++ H  F   K +  KI + DG+    L+ F R  + L+    EG  I 
Sbjct: 57  NFPKVHTICK-VTAHQWFGYGKMKTLKIAITDGSANAWLVAFNR--DFLEKSLPEGSIIA 113

Query: 125 VTGKIK----KLKNRIIMVHPHYIFHNSQDV-NFPLIEA----VYSLPTGLSVDLFKKII 175
           VTGK +    +L++            N  D  N P+ ++    +Y L  GL+  +++K +
Sbjct: 114 VTGKFETKYNELQSSSFEASRISFDGNLADFENIPVPDSAVIPIYPLTEGLTQKVYRKTV 173

Query: 176 VEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            +AL +    +   I   ++++++  + +EA   +H P+          AR+ L Y+EL 
Sbjct: 174 AQALKQYAKNISNEIPDKIIKERNLLNKSEAILFVHQPQT---LNQAQEARKTLIYEELY 230

Query: 235 AGQIALL---LMRK--------------------------QFKKEIGIPINVEGKIAQKI 265
             +  +L   LM +                          Q + E    ++   K   +I
Sbjct: 231 LFEYKMLERALMHRGTLPLQDFVPEAYPYFSTPDSETGLEQIRNEFQKSLSPRQK---QI 287

Query: 266 LRNIPFSPTKSQESAI----KDILQDMSQKNRML--------------RILQGDVGSGKT 307
             ++ F  T  Q ++I    +DI +  ++ N ML              R+LQGDVGSGKT
Sbjct: 288 FSSLNFELTLDQMNSILEMNRDIDKSQTECNTMLNAPQKLSKPPFSMQRLLQGDVGSGKT 347

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           LV+    A  ++ GGQ  I+AP  +LA+QH E   K  +   I    +TGN+  + R+  
Sbjct: 348 LVSFFVCARTIDYGGQCAILAPTELLARQHAENAAKLLEPAGIKTAFLTGNLKASGRQSL 407

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--------AT 419
           L  +  G   I+IGTHALF  + QY  L L ++DEQHRFGV QR  +  K        A 
Sbjct: 408 LNALRDGNIDIVIGTHALFSRNTQYKNLQLAVIDEQHRFGVTQRESIISKGRISFKHMAH 467

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +P +L+M+ATPIP+TL LT+ GD+DIS I   P GR P+KT +        V E ++  L
Sbjct: 468 SPDLLMMSATPIPQTLALTAFGDLDISVIKTMPKGRLPVKTYLTVFGNERNVYEAIRKEL 527

Query: 480 SEGKKAYWICPQI------EEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKE 531
           + G +AY++ P+I      E+ ++++ +S  E F+ L +    +   A+IHG+  D  + 
Sbjct: 528 NAGHQAYFVYPRIAENPQAEQTEKTSLKSAEEMFDFLSKEVYPNFKCALIHGKTDDEQQA 587

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            ++  F +G  ++L+ATTV+EVG+DV +A+ I IE+AE FGLA+LHQLRGRVGRG+  S 
Sbjct: 588 EILKKFSSGNIQVLVATTVVEVGVDVPNATCIAIEHAERFGLAELHQLRGRVGRGKFQSY 647

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C L Y   +++   +RL  L  + DGF IAEEDLK R  GE+ G  QSG     IA    
Sbjct: 648 CFLTYSKNITETGISRLKALHQSNDGFFIAEEDLKLRGPGEVFGTAQSGYFALNIADLSR 707

Query: 652 HDSLLEIARKDAKHILTQ 669
              +L+ AR +A   L Q
Sbjct: 708 DKEILKTARYNALCQLKQ 725


>gi|169630359|ref|YP_001704008.1| ATP-dependent DNA helicase RecG [Mycobacterium abscessus ATCC
           19977]
 gi|169242326|emb|CAM63354.1| ATP-dependent DNA helicase RecG [Mycobacterium abscessus]
          Length = 746

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 227/720 (31%), Positives = 372/720 (51%), Gaps = 91/720 (12%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEE--------RIVTITGYISQHSSFQLQKRRP--YKI 92
           DLL ++P     R Y    S   E+           T+ G+I+     +++ R+     +
Sbjct: 31  DLLHHYP-----RRYSTDFSLRDEQDGESAKPGEHTTLVGFITSAELKRMRNRKGQFLSV 85

Query: 93  LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--------- 143
            L      +   FF+     +K     G ++ ++G + + + +  + HP Y         
Sbjct: 86  TLGSAPHAVQATFFH--PHKVKRDLQVGNRVMLSGAVGEFRGKPQLTHPDYLVLETALGE 143

Query: 144 ------------IFHNSQDVN----------FPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
                       I   ++D +          FP+  A  +L    S D+++  I + L++
Sbjct: 144 STETRGSTALRGIAGAARDASTAISAFQRNVFPIYPATKNLE---SWDIYR-CIDQVLTQ 199

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           L  +PE +   +L +    S+ EA   IH    ++D      AR RLA+DE L  Q+AL 
Sbjct: 200 LDPVPEALPDAVLAEYGLMSLDEALRKIH---MSEDASEQKQARRRLAFDEALGLQLALA 256

Query: 242 LMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           + R       G P+ + +  +   +L  +PF  T+ Q   + +I +D++    M R+LQG
Sbjct: 257 MRRGSEIGSAGPPMPLAQAGLRADLLGQLPFDLTEGQRHVVAEIGEDLAGVKPMNRLLQG 316

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQ 349
           +VGSGKT+VAL+AM  A++AG Q  ++AP  +LA QH   ++               +  
Sbjct: 317 EVGSGKTVVALLAMMQAIDAGYQCALLAPTEVLAVQHARSLRAMLGSLATAGELGAPDDA 376

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
             + ++TG+M  A +++    +A G A I+IGTHAL QDS+ ++ L LV+VDEQHRFGV+
Sbjct: 377 TSIALLTGSMSPAVKKQIKADVATGLAGIVIGTHALLQDSVDFHNLGLVVVDEQHRFGVE 436

Query: 410 QRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           QR +L  KA+    PH+L+MTATPIPRT+ LT  GD++ S + E P GR+PI T  +   
Sbjct: 437 QRDRLRAKASQGIVPHLLVMTATPIPRTVALTVFGDLETSTLRELPRGRQPITTTAVFTR 496

Query: 467 R----IDEVIERLKVVLSEGKKAYWICPQIE-EKKESNFRSVVER------FNSLHEHFT 515
                +    ER+   ++ G++AY +  +I+ + K+S      E+         L+E   
Sbjct: 497 EKPGWLARGWERIAEEVAAGRQAYVVASRIDADDKDSGPEEAEEKRPPPVPVTELYETIR 556

Query: 516 SS------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            S      I ++HGR+    K++VM +F  G   +L+ TTVIEVG+DV +A++++I +A+
Sbjct: 557 GSLLPGLRIGLLHGRLPSEQKDAVMTAFNAGEIDVLVCTTVIEVGVDVPNATVMLIMDAD 616

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            FG++QLHQLRGRVGRG     C+L+     + ++  RL  +++T DGF +AE DL++R+
Sbjct: 617 RFGISQLHQLRGRVGRGGNKGLCLLVSPCSPAGSAGRRLRAVQDTLDGFTLAELDLEERR 676

Query: 630 EGEILGIKQSGMPKFLIAQPEL-HDSLLEIARKDAKHILTQDPDLT---SVRGQSIRILL 685
           EG++LG  QSG    L     L H  ++E AR+ A      DP+L    ++ G + R L+
Sbjct: 677 EGDVLGRDQSGRAVNLRLLSLLDHRDMIETAREMAMRACADDPELAQQPALAGMARRFLV 736


>gi|170781173|ref|YP_001709505.1| putative ATP-dependent DNA helicase RecG [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155741|emb|CAQ00862.1| putative ATP-dependent DNA helicase RecG [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 727

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 226/687 (32%), Positives = 358/687 (52%), Gaps = 67/687 (9%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100
           DLL + P  +  R     ++E+  ++  TI   + +     ++ RR    ++ + DG G 
Sbjct: 31  DLLEHLPRRYARRGELTALAELPVDQQATIVAEVREVRERPMRARRGSILEVRITDGRGF 90

Query: 101 ITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD------- 150
           +TL FF   +R  +++  V     +    GK+   +  + + HP Y   ++ +       
Sbjct: 91  LTLTFFNQAWRAKDLVPGV-----RGIFAGKVSDYRGALQLAHPDYELFDAHEGPELSGG 145

Query: 151 ---------VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPS 201
                       P+   +Y     ++     K +  AL  +  L + +  D+  ++    
Sbjct: 146 EPDAAARRWAEMPI--PIYPASASMASWQVAKSVELALDAVDDLEDPVPADVRAERGLLP 203

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGK 260
             EA   +H P K  D +W    R+ L + E    Q ALL  R+  +     P I   G 
Sbjct: 204 YREALEGVHRPEK--DVDWKR-GRDALRFQEAFVLQTALLQRRQAARALPATPRIPTPGG 260

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
              ++   +PF  T  Q    ++I  DM++   M R++QG+VGSGKTLVAL AM A  ++
Sbjct: 261 HLDRLDAQLPFELTGDQRLVGEEIATDMARTWPMNRLVQGEVGSGKTLVALRAMLAVADS 320

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           GGQ+ ++AP  +LA QH   +          +++  ++TG +  A R++AL RI  GQA 
Sbjct: 321 GGQSALLAPTEVLASQHLRSLTASLGPDLAAELMPTLLTGQLSTAERKRALLRIVSGQAR 380

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLV 436
           I++GTHAL  D + +  L LV+VDEQHRFGV QR  L +K  T PHVL++TATPIPRT+ 
Sbjct: 381 IVVGTHALLGDRVGFLDLGLVVVDEQHRFGVDQREALRRKGGTPPHVLVLTATPIPRTVA 440

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQI 492
           +T  GD+D+S I E P+GR+PI++ ++P++     I+ V ER    + +G++A+ +CP I
Sbjct: 441 MTVFGDLDVSTIAELPSGRQPIESFVVPLHEHPGWIERVWERTAEEIQKGRQAFVVCPAI 500

Query: 493 -------------EEKKESNFR---SVVERFNSL---HEHFTS-SIAIIHGRMSDIDKES 532
                        E  +++  R   + V   ++L   H    S   A++HGRM+  +K+ 
Sbjct: 501 DPQDPDAEDEDAGEGAEDAPTRPSLATVTEVDALLGAHPRLGSVRRAVLHGRMTGEEKDR 560

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM +F  G   L++ATTVIEVG+DV +AS ++I +A+ FG++QLHQLRGRVGRG     C
Sbjct: 561 VMRAFSAGDIDLIVATTVIEVGVDVPNASTMVILDADRFGVSQLHQLRGRVGRGGVPGLC 620

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL----IAQ 648
           +++ H      +  R+  +  T DGF +A  DL+ R+EG +LG  QSG    L    +AQ
Sbjct: 621 LMVTHAEPETVARERVDAVAATLDGFELARVDLELRREGNVLGTNQSGGRSSLRLLRVAQ 680

Query: 649 PELHDSLLEIARKDAKHILTQDPDLTS 675
                 L+E AR+ A  +L   PDL  
Sbjct: 681 ---DGDLIESAREHAHDVLEASPDLAD 704


>gi|145224791|ref|YP_001135469.1| ATP-dependent DNA helicase RecG [Mycobacterium gilvum PYR-GCK]
 gi|145217277|gb|ABP46681.1| ATP-dependent DNA helicase RecG [Mycobacterium gilvum PYR-GCK]
          Length = 753

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 217/653 (33%), Positives = 344/653 (52%), Gaps = 82/653 (12%)

Query: 92  ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS--- 148
           + L D   ++T  FF  K   LK    EG K+ ++G++   +  + + HP ++  +S   
Sbjct: 86  VTLRDRRPKVTATFFNPK--WLKKTLVEGTKVMLSGEVGYFRGTMQLTHPAFMVLDSASG 143

Query: 149 QDVNFPLIEAVYSLPTGLSVDL---FKK-------------------IIVEALSRLPVLP 186
           + V    + ++ S       DL   F+K                    + +AL+ L  +P
Sbjct: 144 KTVGTKSLTSIASTSGATGDDLLAEFEKNYFPIYSATSKVQTWDIYACVRQALAVLDPVP 203

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +    +++    S  EA   +H    A+D    + A ERL +DE    Q  L++ R  
Sbjct: 204 ETLPDWFVREHDLMSEDEALRAVHLSENAED---RARAIERLTFDEAAGLQWGLVVRRNS 260

Query: 247 FKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
                G P     G +   +   +PF  T  Q+  +  I +++     M R+LQG+VGSG
Sbjct: 261 ELGASGPPAPRRGGGLVDAMTAQLPFELTAGQQEVLAVISEELGAARPMNRMLQGEVGSG 320

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-------------TQNTQIIV 352
           KT+V+L+AM   ++AG Q  ++AP  +LA QH   I+                Q T+  V
Sbjct: 321 KTVVSLLAMLQMIDAGYQCALLAPTEVLAAQHSSSIRSMLGALAGAGELGGAEQATR--V 378

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+M  A +R A   +A G A I+IGTHAL  DS+++  L +V+VDEQHRFGV+QR 
Sbjct: 379 SLLTGSMSAAQKRDARREVASGVAGIVIGTHALLSDSVEFDNLGMVVVDEQHRFGVEQRD 438

Query: 413 KLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467
           +L  KA A   PH+L+MTATPIPRT+ LT  GD++ S + E P GR+PI T  I I    
Sbjct: 439 RLRAKAPAGLTPHLLVMTATPIPRTVALTIYGDLETSTLRELPRGRRPITTNTIFIRDKP 498

Query: 468 --IDEVIERLKVVLSEGKKAYWICPQIEEK-----------------KESNFR-----SV 503
             +D    R+   ++ G++AY +  +I+E                   ES+ +     +V
Sbjct: 499 AWLDRAWTRIAEEVAAGRQAYVVASRIDENDTADGKADGKAKKAKKTSESDQQGPPPVTV 558

Query: 504 VERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           V+    L     S +   ++HGR+S  +K++VM +F+ G   +L+ TTVIEVG+DV +A+
Sbjct: 559 VDLLARLQRGPLSGVRLGLMHGRLSGDEKDAVMAAFRAGDIDVLVCTTVIEVGVDVPNAT 618

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
           ++++ +A+ FG++QLHQLRGR+GRGE  S C+L  + P S  +  RL+ +  T+DGF +A
Sbjct: 619 VMVVMDADRFGISQLHQLRGRIGRGEHPSLCLLATNLPESSKAGQRLTAVAATQDGFELA 678

Query: 622 EEDLKQRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDP 671
           E DL++R EG++LG+ QSG P   +FL      H  ++  AR+  + +   DP
Sbjct: 679 ELDLRERSEGDVLGLFQSGRPVTLRFLSLAD--HVEIILSARELCETVYASDP 729


>gi|259501525|ref|ZP_05744427.1| DNA helicase RecG [Lactobacillus iners DSM 13335]
 gi|259167043|gb|EEW51538.1| DNA helicase RecG [Lactobacillus iners DSM 13335]
          Length = 673

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 223/700 (31%), Positives = 367/700 (52%), Gaps = 45/700 (6%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  LS++            DLLFY P  +      P ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALSQL------KIKTIYDLLFYFPRRYDSLETFP-LNELK 58

Query: 66  EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I      S +     R  +K+ ++    +I ++ F+ +   LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175
            I + GK              Y+  +     + ++      E VYSL + +        I
Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLREEGFEPVYSLNSHIKQKKLVSFI 160

Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            +A+ + LP LPE I + L  K     +      +H P   KD +    A+    + E  
Sbjct: 161 SQAIEKYLPQLPEVIPQYLRDKYKLLDVKSMIIQMHQP---KDLQQVKVAQRTAIFLEFF 217

Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q+ L  L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   R
Sbjct: 218 VFQLQLSQLLYANDQKNSGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKR 277

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   
Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++T +     +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +
Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K     +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++ 
Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532
            +   L +G + Y + P I E  + + ++    +  +  +F S  +A++HG+M+   K  
Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMASSQKSD 517

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S C
Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGSTQSYC 577

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           I +  P  + ++  RL ++   +DGF +A EDLK R EG++ G  QSG+P+F +     +
Sbjct: 578 IFVSDPK-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDLFGQAQSGIPQFKLGDIINN 636

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            ++   A+K++K ++ Q+P+L    G+    L  L +Y++
Sbjct: 637 YNIFTTAQKESKILVHQNPELV---GEEYDFLKLLMEYDD 673


>gi|296130143|ref|YP_003637393.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296021958|gb|ADG75194.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 747

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 217/697 (31%), Positives = 359/697 (51%), Gaps = 68/697 (9%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEI 101
           DL+ ++P  + +      ++ +     VT+   + + S     Q R   +  + DG   I
Sbjct: 32  DLVRHYPRRYAEPGTLTDMASLRVGEHVTVVAEVVRTSLRPTAQGRGLLQSTITDGHSRI 91

Query: 102 TLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP---- 154
            L FF    +K E  +     GR+   TG++   ++ + ++HP      + D        
Sbjct: 92  ELTFFASHVKKLEWRQGQLRPGRRGLFTGEVSLYRDTLQLMHPECRLFGADDDAHDEDEA 151

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRL---PV----LPEWIEKDLLQKKSFPSIAEAFN 207
           L+EA   +P   +V  F+   V    R    P+    +P+ +  DL  + + P++ EA  
Sbjct: 152 LLEAGRPIPVYPAVAGFESWKVAQAVRTVLDPLREEDVPDPVPPDLRARDALPTLLEALR 211

Query: 208 IIHNPRKAKDFEWTSPARERLAYDE--LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI 265
           ++H P+   D+      R RL Y+E  +L  ++A    R   ++ +  P   +G +    
Sbjct: 212 LVHVPQDEADWRR---GRTRLRYEEALVLQAELARRRARAAQQEAVARPPRADGLLDAFD 268

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
            R +PF+ T  Q +  ++I ++++    M R+LQG+VGSGKT+VAL AM   V+AGGQA 
Sbjct: 269 AR-LPFTLTAGQRAVGEEIARELAAPRPMQRLLQGEVGSGKTVVALRAMLQVVDAGGQAA 327

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHG 374
           ++AP  +LA QH   +++   +               V ++TG++P A RR+A+   A G
Sbjct: 328 LLAPTEVLAAQHARTLRRMLGDLAEGGFLGGAALATRVALLTGSLPTAARREAVLDAASG 387

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPR 433
            A I++GTHAL  D +Q+  L LV+VDEQHRFGV+QR  L  KA   PH L+MTATPIPR
Sbjct: 388 AAGIVVGTHALLSDQVQFADLGLVVVDEQHRFGVEQRDALRAKAGRTPHTLVMTATPIPR 447

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICP 490
           T+ +T  GD++ S ++E PAGR  I T  +P +     D   +R++  +  G +AY +CP
Sbjct: 448 TVAMTVFGDLETSVLSEVPAGRAGITTHTVPADNTRWTDRTWQRVREEVERGGRAYVVCP 507

Query: 491 QIEEKKESN----------------------------FRSVVERFNSLHEH--FTS-SIA 519
           +I+    +                              R+V++    L      T   + 
Sbjct: 508 RIDGDAPAGDAADEDGTDLVLEAEATVGAPDAGARRPLRAVLDVAEELRARPDLTGIGVG 567

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           ++HGR+   +K+    +F +G   +L++TTV+EVG+DV DA+++++ +A+ FG++QLHQL
Sbjct: 568 VLHGRLGPEEKDRAFAAFASGATPVLVSTTVVEVGVDVPDATVMVVLDADRFGISQLHQL 627

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           RGRVGRG     C+L+       +++TRL  L  T DGF +A  DL+ R EG++LG  Q 
Sbjct: 628 RGRVGRGTRPGLCLLVSAAAPGTDAHTRLETLAATSDGFELAALDLELRHEGDVLGAAQH 687

Query: 640 GMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           G    L + +      ++  AR DA+ ++ QD +L +
Sbjct: 688 GTGSSLRLLRVTRDGDVIARARTDARALVAQDAELAA 724


>gi|227495861|ref|ZP_03926172.1| DNA helicase RecG [Actinomyces urogenitalis DSM 15434]
 gi|226834618|gb|EEH67001.1| DNA helicase RecG [Actinomyces urogenitalis DSM 15434]
          Length = 758

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 222/739 (30%), Positives = 363/739 (49%), Gaps = 94/739 (12%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99
           DLL   P  +        +S + E   VT+   + + ++ + +  RP    + L+ DG  
Sbjct: 23  DLLRLLPRRYDTWGDLTDLSSLVEGEQVTVQAQVMRSAARRARGGRPPALMEALVTDGAS 82

Query: 100 EITLLFFYRKTEML--KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----- 152
           ++ ++FF     M      F  G  + ++GK+        +  P +   +  D       
Sbjct: 83  KMDVVFFGAAGLMAHYAEQFSPGTTVLLSGKVGIRHGHRQLASPRFQVLDELDEAERAEL 142

Query: 153 ----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
                P+  A  SLP+   V    + +++ L+   V PE +  ++ Q         A+  
Sbjct: 143 LARPMPIYPATESLPS-WRVAKAVRTVLDQLTEQDV-PEPLPPEVRQAHDLVGALTAWRW 200

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK---EIGIPINVEGKIAQKI 265
           +H P  A+  +W + AR+RL Y+E    Q AL+  R   +     +  P    G +   +
Sbjct: 201 VHTPEDAE--QWRA-ARKRLRYEEAFVLQSALVQRRAAHEATHAAVAWPRPGAGSLRASL 257

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
             ++P++ T+ QE   +++ + ++    M  +LQGDVGSGKTLVAL AM   V  GGQA 
Sbjct: 258 DASLPYTLTRGQERVGRELEEALASTVPMQTLLQGDVGSGKTLVALRAMLQVVGGGGQAA 317

Query: 326 IMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKALERIA 372
           ++AP  +LA QH   +++              +Q TQ++  ++TG+ P   RR+ L R+A
Sbjct: 318 LLAPTEVLAAQHRSSLEQLLGPLARAGMLGGASQATQVL--LLTGSTPTPQRREILARLA 375

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----------APH 422
            G++ I++GTHAL  D++Q   L LV+VDEQHRFGV QR  L ++             PH
Sbjct: 376 GGESAIVVGTHALLSDTVQIPFLGLVVVDEQHRFGVAQRDALRERGNVRDPDTGQLRTPH 435

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVL 479
           +L+MTATPIPRT+ +T  GD+D + + E PAGR P+ T ++P  R   ++ + +R    +
Sbjct: 436 LLVMTATPIPRTIAMTVFGDLDTAVLDELPAGRSPVATHLVPWERTGWVEGIWQRAAREV 495

Query: 480 SEGKKAYWICPQIEEKKE------------------------------------------ 497
           ++G + Y +CP+I+  +                                           
Sbjct: 496 AQGGRVYVVCPRIDAGEADPGDSADDPQASASRGGTVPLFAAVPGTGDEAADEESAPARP 555

Query: 498 -SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            ++    VER          SI  + GRMS  DK++ M  F  G   +L++TTVIEVG+D
Sbjct: 556 LASVEDWVERLRGEPALAGVSIGTLTGRMSQADKDAAMADFARGRAPVLVSTTVIEVGVD 615

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +A++++I +A+ FGL+QLHQLRGRVGRG+  S C+ +    +   ++ RL     T D
Sbjct: 616 VPEATMMVILDADRFGLSQLHQLRGRVGRGQRESLCVAVTGVEVGSPAFHRLRAFAQTMD 675

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           GF +AE DL+ R EG +LG  QSG    L + +     +L+  AR +A+ +++ DP L  
Sbjct: 676 GFRLAEADLELRSEGNVLGAAQSGRRSDLDLLRVTRDGALIASARAEAEALVSADPHLAD 735

Query: 676 VRGQSIRILLYLYQYNEAF 694
            R  +  I   L + + A+
Sbjct: 736 HRDLAAAIADRLDEESRAY 754


>gi|312874514|ref|ZP_07734539.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 2053A-b]
 gi|311089905|gb|EFQ48324.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 2053A-b]
          Length = 673

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 224/700 (32%), Positives = 367/700 (52%), Gaps = 45/700 (6%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  LS++            DLLFY P  +      P ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALSQL------KIKTIYDLLFYFPRRYDSLEIFP-LNELK 58

Query: 66  EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I      S +     R  +K+ ++    +I ++ F+ +   LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175
            I + GK              Y+  +     + ++      E VYSL + +        I
Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFI 160

Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            +A+ + LP LPE I + L  K     +      +H P   KD +    A+    + E  
Sbjct: 161 SQAIEKYLPQLPEVIPQYLRDKYKLLDVKSMIIQMHQP---KDLQQVKIAQRTAIFLEFF 217

Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q+ L  L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   R
Sbjct: 218 VFQLQLSQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKR 277

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   
Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++T +     +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +
Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K     +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++ 
Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532
            +   L +G + Y + P I E  + + ++    +  +  +F S  +A++HG+M+   K  
Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDRVALLHGKMASSQKSD 517

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S C
Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYC 577

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           I +  P  + ++  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     +
Sbjct: 578 IFVSDPK-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINN 636

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            ++   A+K++K ++ Q+P+L    G+    L  L +Y++
Sbjct: 637 YNIFTTAQKESKILVHQNPELV---GEEYDFLKLLMEYDD 673


>gi|261415049|ref|YP_003248732.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371505|gb|ACX74250.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302328174|gb|ADL27375.1| ATP-dependent DNA helicase RecG [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 697

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 227/685 (33%), Positives = 358/685 (52%), Gaps = 50/685 (7%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           LS+  G+G K    L+K      +  +   DLL+  P +++D+    KI+E+ +     +
Sbjct: 3   LSSLPGLGPKRLEKLNK------SGLSTIADLLYNIPRTYLDQTKVSKIAELHDGDRAVV 56

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G I++    + +  R +  +L DGT EI+LLFF R T  + N    G +  V+G +   
Sbjct: 57  IGIITRAGIVKGRMSR-FMAVLTDGTAEISLLFF-RGTRFIANRVKPGTRWLVSGTVGSY 114

Query: 133 KNRIIMVHPHY-IFHNSQDVN------FPLIEAV--YSLPTGLSVDLFKKIIVEALSRLP 183
           +  + +VHP    F   +  N      +P+ E      +      +L+K I        P
Sbjct: 115 RG-LQLVHPDMQPFDEGEAFNGQILPVYPISEVCREAKMEQRFFRNLYKTIF-----NFP 168

Query: 184 --VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              LP    ++L     F  + +    +H P   KDF+    A+  L   ELL   + ++
Sbjct: 169 GLTLPNACPRELTDYLHFAPVMDNLRTLHMP---KDFDSIYKAKRELKILELLPFCLRMV 225

Query: 242 LMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             R++ +K  G    ++ G +     R +PF  T  Q++A+  I+  ++ K +   +LQG
Sbjct: 226 -KRRENQKIRGHERQIDLGNVMAAKAR-LPFQLTAGQDAALNTIIDGLNGKKQFHALLQG 283

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT+VA++A+ A   AG Q  +M P  ILA+QH++ +K +     I V ++ G  P
Sbjct: 284 DVGCGKTVVAMLAIMAVCGAGEQCALMVPTDILARQHFKSLKPFFDAAGIRVHLLVGATP 343

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            A ++  L  +  G  +++IGTHALF   + + KL LVI+DEQHRFGV QR  L  K   
Sbjct: 344 AAEKKVILGELQMGLCNVVIGTHALFSKDVFFAKLGLVIIDEQHRFGVSQREALLAKGDY 403

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P +L+M+ATPIPR+L +T  GD+ +  I EKPAGRKPIKT ++   + + + + +    +
Sbjct: 404 PDMLVMSATPIPRSLAMTLYGDLKVISIKEKPAGRKPIKTRLVNAAKRESMKQFICKEAA 463

Query: 481 EGKKAYWICPQI-----EEKKESNFRSVVERFNSLHEHFTS-----------SIAIIHGR 524
            G   YWI  ++     +   ES+ RSV +  N +     +            +A +HG+
Sbjct: 464 GGNLCYWIASRVNADGSDNADESSARSVDDIVNEMRSFIAAFGHTDANIAKLKVAGVHGQ 523

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M D  ++ ++  F  G  ++L+ATTVIEVG++V  A++++I+  + FGLAQLHQLRGRVG
Sbjct: 524 MDDTQRDEIIKRFAAGEIQILVATTVIEVGVNVPAANLMVIDQPDRFGLAQLHQLRGRVG 583

Query: 585 RGEEISSCILLY-HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           RG + + C L+      ++ S  RLS    TEDGF IAE DLK R  G + G +QSG   
Sbjct: 584 RGNQEAWCFLMTPEGEAAETSMERLSQFAATEDGFEIAELDLKTRGAGNLEGNEQSGAWV 643

Query: 644 FLIAQPELHD-SLLEIARKDAKHIL 667
           F      +HD  L+    + A+HIL
Sbjct: 644 FRWFD-WIHDQELISQTLERAEHIL 667


>gi|218281658|ref|ZP_03488059.1| hypothetical protein EUBIFOR_00626 [Eubacterium biforme DSM 3989]
 gi|218217265|gb|EEC90803.1| hypothetical protein EUBIFOR_00626 [Eubacterium biforme DSM 3989]
          Length = 614

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 196/539 (36%), Positives = 293/539 (54%), Gaps = 19/539 (3%)

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           VY L  GL     + I+ EAL  + +LP+ + +  + K     I+ A+  IH P   K  
Sbjct: 92  VYPLIEGLKQSDIQAIMKEALKHVDILPQRVPQRYVDKYKLLDISTAYKWIHFPENEKQL 151

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
                A   L Y+E L  Q  +  M +  KKEI           +  + N+PF  TK Q 
Sbjct: 152 H---AAIRTLKYEEFLCFQCVMQSMHE--KKEIKTKKVFSVSTVKNWISNLPFELTKDQL 206

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           S+I DIL D+   N M R++QGDVG GKT+VA I+M A   AG Q+ ++AP  ILA+QH 
Sbjct: 207 SSIDDILYDLKSTNVMFRLVQGDVGCGKTIVAQISMYANQLAGYQSALLAPTEILARQHV 266

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + + K      + V  +T       +++ LE++ +G+   ++GTHALFQ+++ ++KL LV
Sbjct: 267 KNMHKLGLEATLYVSSLTAK----EKKEILEKLENGKIFNVVGTHALFQENVVFHKLGLV 322

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I DEQ RFGV+QR  L +K      L+M+ATPIPRT      GD+DIS I   P GRK +
Sbjct: 323 IADEQQRFGVKQRRSLLEKGKCVDFLMMSATPIPRTYAHFLYGDMDISSIHTMPIGRKSV 382

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            T       +   ++ +   + EG++ Y +CP IEE  E   R+V E +  + +      
Sbjct: 383 VTKYFKTASMAPCLKDVLNFIKEGRQCYVVCPAIEENDEYKMRNVFEIYEGMTKTLKDVR 442

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I ++HG+M+  +KE  M  F      +L++TTVIEVGIDV +AS+++I +A  FGL+ LH
Sbjct: 443 IGLLHGKMTSQEKEETMAKFSKHEFDILVSTTVIEVGIDVANASVMVIYDAHRFGLSTLH 502

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRV R ++   C LL        +  RL  ++  +DGF ++  DL  R  G+ILGI+
Sbjct: 503 QLRGRVARDKKQGYCFLLSSSN-DPQAIERLKKMEELKDGFEVSNYDLHMRGPGDILGIR 561

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
           QSGMP  +    E   +++E+  +DAK I+    D        + +LLY+    E  Q+
Sbjct: 562 QSGMPCLVFGDFEKDQAMMEMCIQDAKEIIQDQVD--------VDLLLYISNAIENAQY 612


>gi|260202115|ref|ZP_05769606.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis T46]
 gi|289444537|ref|ZP_06434281.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis T46]
 gi|289417456|gb|EFD14696.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis T46]
          Length = 737

 Score =  330 bits (846), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 223/659 (33%), Positives = 351/659 (53%), Gaps = 68/659 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEE--RIVTITGYISQHSSFQLQK---RRPYKILLNDG 97
           DLL ++P S+++   R  I +   E    +TI   I+   SF ++K   R+  +I +  G
Sbjct: 31  DLLRHYPRSYVEGAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNRKCLRITVGGG 90

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
             ++T  FF    + +     +  K+ ++G++   K  + + HP ++  +S D       
Sbjct: 91  RNKVTATFF--NADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSPDGKNHGTR 148

Query: 158 AVYSLPTGLSVDLFKKIIVEALSR--LPVLP------EW-IEK------DLLQKKSFPSI 202
           ++ S+    S  +  +++VE   R   P+ P       W I K      D+L +   P  
Sbjct: 149 SLKSIADA-SKAISGELVVEEFERRFFPIYPASTKVQSWDIFKCVRQVLDVLDRVDDPLP 207

Query: 203 AE------------AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           AE            A   IH    A+       ARERL +DE +  Q AL+  R     E
Sbjct: 208 AELRAKHGLIPEDEALRAIH---LAESQSLRERARERLTFDEAVGLQWALVARRHGELSE 264

Query: 251 IGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTL 308
            G     +   +A ++LR +PF  T  Q   + D+L D    NR L R+LQG+VGSGKT+
Sbjct: 265 SGPSAAWKSNGLAAELLRRLPFELTAGQREVL-DVLSDGLAANRPLNRLLQGEVGSGKTI 323

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITG 357
           VA++AM   V+AG Q  ++AP  +LA QH   I+                    V ++TG
Sbjct: 324 VAVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRVALLTG 383

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           +M    +++    IA GQ  I+IGTHAL Q+++ ++ L +V+VDEQHRFGV+QR +L  K
Sbjct: 384 SMTAGQKKQVRAEIASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRDQLRAK 443

Query: 418 ATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDE 470
           A A   PH+L+MTATPIPRT+ LT  GD++ S +   P GR+PI T +I +      +D 
Sbjct: 444 APAGITPHLLVMTATPIPRTVALTVYGDLETSTLRALPLGRQPIATNVIFVKDKPAWLDR 503

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---------SIAII 521
              R+    + G++AY + P+I+E  +++ +  V    +    F+           +A++
Sbjct: 504 AWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGVRPSATAEGLFSRLRSAELAELRLALM 563

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HGR+S  DK++ M +F+ G   +L+ TTVIEVG+DV +A+++++ +A+ FG++QLHQLRG
Sbjct: 564 HGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQLHQLRG 623

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           R+GRGE  S C+L    P    +  RL  +  T DGF +A+ DLK+RKEG++LG  QSG
Sbjct: 624 RIGRGEHPSVCLLASWVPPDTPAGQRLRAVAGTMDGFALADLDLKERKEGDVLGRNQSG 682


>gi|86742288|ref|YP_482688.1| DEAD/DEAH box helicase-like protein [Frankia sp. CcI3]
 gi|86569150|gb|ABD12959.1| ATP-dependent DNA helicase RecG [Frankia sp. CcI3]
          Length = 739

 Score =  330 bits (846), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 223/742 (30%), Positives = 378/742 (50%), Gaps = 82/742 (11%)

Query: 19  VGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           VG + +  L+      +  E R + DLL + P  +   H R +++++++   + +   ++
Sbjct: 20  VGARAAALLA------DGLELRLVGDLLGHLPRRY---HERGELTDLAD---LVVGETVT 67

Query: 78  QHSSFQLQKRRPYK--------ILLNDGTGEITLLFF---YRKTEMLKN--VFFEGRKIT 124
             +  +  +RRP +        + + DG   ++L FF   +R+ ++       F G+   
Sbjct: 68  VQARVEKTERRPMRGTRKSMVRVTVTDGRHSLSLTFFNQSWRERDLRPGTTALFAGKVDE 127

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNF-----PLIEAVYSLPTGLSVDLFKKIIVEAL 179
             G+ +     + ++ P           F     P+  A   +P+        + +  AL
Sbjct: 128 FRGQRQLTNPEVQLLEPEESGEAVSGAPFANALVPIYPASAKVPSWT----LARCVRLAL 183

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             L  + + +  DL  +   P++AEAF ++H P    +    +  R RL +DE L  Q+A
Sbjct: 184 DSLDPVEDPLPDDLRSRYRLPALAEAFRLVHQPANRGEI---ASGRRRLTWDEALVLQVA 240

Query: 240 LLLMRKQFKKEIGIPI--NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           L   R++ +     P     +G +A     ++PF  T  Q    K I  ++ +   M R+
Sbjct: 241 LAQRRREVEALATTPRPQRPDGLLA-AFDADLPFPLTTGQREVGKTIAAEIGRPVPMHRL 299

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQ 346
           LQG+VGSGKTLVAL AM   V+ GGQAV++AP   LA QH   +++              
Sbjct: 300 LQGEVGSGKTLVALRAMLTVVDTGGQAVLLAPTETLAAQHSRSLREMLGDLARAGELGAD 359

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           +    V ++TG+M    RR+AL  IA G   +++GTHAL  D + +  L L++VDEQHRF
Sbjct: 360 HRATRVTLVTGSMGGRARREALAEIADGSTGLVVGTHALLHDEVIFNDLGLIVVDEQHRF 419

Query: 407 GVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           GV+QR  L  +    PH+L+MTATPIPRT+ +T  GD+++S++TE PAGR PI T ++P 
Sbjct: 420 GVEQRDALRARGRRPPHLLVMTATPIPRTVAMTVFGDLEVSELTELPAGRSPIGTFVVPA 479

Query: 466 NR---IDEVIERLKVVLSEGKKAYWICPQI---------------------EEKKESNFR 501
           ++    D +  R++  ++ G +AY +CP+I                     + +      
Sbjct: 480 SQRSWTDRMWGRIRDEVAAGHQAYVVCPRIGAGGEDGGGEDDPAESSAAGPDSRASRPAA 539

Query: 502 SVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           +V E    L +   + + +  +HGR++   +E+ M+ F  G   +L+ATTVIEVG++V +
Sbjct: 540 TVCEVLPLLVDGEFADLRVEPLHGRLAPGQREATMNRFAAGEVDVLVATTVIEVGVNVPN 599

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A+++++ +A+ FG++QLHQLRGRVGRG     C+L         ++ RLS +  T DG  
Sbjct: 600 ATVMVVLDADRFGVSQLHQLRGRVGRGTAPGWCLLHTAAEPGSPAWERLSAVAATSDGAK 659

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
           +A  DL QR+EG++LG  QSG  + L + +    + L+  AR++A  ++  DP L   R 
Sbjct: 660 LARLDLAQRREGDVLGAAQSGGRRSLKLLELLRDEDLIRDAREEAGRLVDDDPGLD--RH 717

Query: 679 QSIRILLYLYQYNEAFQFIRAG 700
            ++R LL     + +  F+  G
Sbjct: 718 PALRRLLDAVLDDTSVAFLEKG 739


>gi|312872411|ref|ZP_07732480.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 2062A-h1]
 gi|311091993|gb|EFQ50368.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 2062A-h1]
          Length = 673

 Score =  330 bits (846), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 224/700 (32%), Positives = 366/700 (52%), Gaps = 45/700 (6%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  LS++            DLLFY P  +      P ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALSQL------KIKTIYDLLFYFPRRYDSLETFP-LNELK 58

Query: 66  EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I      S +     R  +K+ ++    +I ++ F+ +   LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175
            I + GK              Y+  +     + ++      E VYSL + +        I
Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFI 160

Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            +A+ + LP LPE I + L  K     +      +H P   KD +    A+    + E  
Sbjct: 161 SQAIEKYLPQLPEVIPQYLRDKYKLLDVKSMIIQMHQP---KDLQQVKIAQRTAIFLEFF 217

Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q+ L  L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   R
Sbjct: 218 VFQLQLSQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKR 277

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   
Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++T +     +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +
Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K     +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++ 
Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532
            +   L +G + Y + P I E  + + ++    +  +  +F S  +A++HG+M    K  
Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSD 517

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S C
Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYC 577

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           I +  P  + ++  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     +
Sbjct: 578 IFVSDPK-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINN 636

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            ++   A+K++K ++ Q+P+L    G+    L  L +Y++
Sbjct: 637 YNIFTTAQKESKILVHQNPELV---GEEYDFLKLLMEYDD 673


>gi|154509012|ref|ZP_02044654.1| hypothetical protein ACTODO_01529 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798646|gb|EDN81066.1| hypothetical protein ACTODO_01529 [Actinomyces odontolyticus ATCC
           17982]
          Length = 715

 Score =  330 bits (845), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 216/671 (32%), Positives = 348/671 (51%), Gaps = 50/671 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITG------YISQHSSFQLQKRRPYKILLND 96
           DLL   P  +        +S + E   VTI         ++  SS  ++     ++ L D
Sbjct: 33  DLLLVAPRRYYHWGRLTPLSSLREGEDVTILAEVAGAHLVANRSSSGVR----LEVALTD 88

Query: 97  GTGEITLLFFYR---KTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN- 152
           G   ++  FF +   K   ++ +   G+     GK+   + ++ + HP +     +D+  
Sbjct: 89  GVQFLSATFFAKNQYKLAPIERLLTPGQSFLFAGKVGAYRGKLQLTHPSFEGVGGEDIER 148

Query: 153 -----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207
                 P+  A  SL +  ++     ++++ L    V P+ +  D+ ++  F S AE   
Sbjct: 149 IASRPIPIYPATGSLAS-WAIARAIGMVLDHLDDAHV-PDPVPADVRERAGFASHAECLR 206

Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
            +H P   +D++    AR+ LA+ E    Q+ L   R+  +    +   ++  + ++   
Sbjct: 207 ALHQPETDEDYQQ---ARKALAFAEAFVLQVGLAAQRRGARAAAALASPIDAPLCERFRS 263

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF  T SQ  A+  I  D++ +  M R+LQGDVGSGKT+VAL A+   V AG Q   +
Sbjct: 264 SLPFELTDSQREAVAQIGADLAGEVPMQRLLQGDVGSGKTVVALSALLQVVAAGHQGAFV 323

Query: 328 APIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           AP  +LA+QH   ++   +        V ++TG+   A RR+    +   +  I+ GTHA
Sbjct: 324 APTEVLAEQHAASLRALLEPLGADDPDVRLLTGSTTPAARREIQSAMNAAEPLIVAGTHA 383

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLT---QKATAPHVLLMTATPIPRTLVLTSLG 441
           LFQ+S+++  L LV+VDEQHRFGV+QR  L    +   A H L+MTATPIPRT+ +T  G
Sbjct: 384 LFQESVRFADLALVVVDEQHRFGVEQRAALRGAREDGRAVHELVMTATPIPRTIAMTVFG 443

Query: 442 DIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQI------ 492
           D+D ++++  P+GR P+ T +        ++    R    +++G++ Y +CP+I      
Sbjct: 444 DLDDTRMSGMPSGRTPVATYLADSANAAWVERTWARAAEEIAQGRRVYVVCPRIDASDDV 503

Query: 493 ---EEKKESNFRSVVERFNSLHEHFTSSIAIIH---GRMSDIDKESVMDSFKNGTCKLLI 546
              EE+      SV E    L  H   S   IH   GR     K  +M+ F  G   LL+
Sbjct: 504 ADAEEEGARPLASVEEVAAYLRSHPALSGIAIHELTGRTPSPVKAQIMEDFSTGRAPLLV 563

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGR    S CI ++   L+ +   
Sbjct: 564 ATTVIEVGVDVSEATLMVILDAQQFGLAQLHQLRGRVGRSSLPSLCIAMHRHELTDSGRA 623

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDA 663
           RL    +T DGF +AE DL+ RKEG++LG  QSG     +FL  + +  ++L+  A+ +A
Sbjct: 624 RLQAFADTTDGFELAEADLRLRKEGDVLGAGQSGTATHLRFLSVRRD--EALIRRAKGEA 681

Query: 664 KHILTQDPDLT 674
           + +L QDP L 
Sbjct: 682 ETLLEQDPMLA 692


>gi|260587797|ref|ZP_05853710.1| ATP-dependent DNA helicase RecG [Blautia hansenii DSM 20583]
 gi|260542062|gb|EEX22631.1| ATP-dependent DNA helicase RecG [Blautia hansenii DSM 20583]
          Length = 636

 Score =  330 bits (845), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 207/630 (32%), Positives = 332/630 (52%), Gaps = 23/630 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP-KISEISEERIVT 71
           +   +G+G+K    L+K+        T   D L Y+P  + D +  P  +S+++  +   
Sbjct: 12  IRNIKGIGEKTEKLLAKL------GITTVGDFLRYYPREY-DEYTEPVGVSQVTAGKKCA 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I+     +   R                L +Y     L+N    G      G +  
Sbjct: 65  VMGRITGKVGVRNTGRLTIVTATLKEENSFLQLTWY-NMPFLRNTLRSGGFYIFRGMVTD 123

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
              R  M  P              +  +Y L  GL+  L  K I + L    ++ E++ +
Sbjct: 124 KNGRKTMEQPEIFKREDYKALLHSLYPIYGLTKGLTNKLMVKTIHQILENKEIVQEYLPE 183

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           +            A + IH P+  KD         RL +DE L   +++ +M+++ +   
Sbjct: 184 EYRNYYQLAEYNYAVSHIHFPKDKKDLLL---GHHRLVFDEFLLFILSIRMMKEKTQD-- 238

Query: 252 GIPINVEGKI---AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +P +   K     + ++  +P+  T +Q+    +I +DM+    M R++QGDVGSGKT+
Sbjct: 239 -MPNSFAIKPVWETENVIDGLPYPLTNAQKRVWNEIERDMTGHTLMSRLVQGDVGSGKTI 297

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE--IITGNMPQAHRRK 366
           +A +AM  A   G QA +M P  +LA+QH++ ++K  +  Q+ ++  ++TG+     +R+
Sbjct: 298 MAFLAMLLAAFNGYQAALMVPTEVLAKQHFKEMEKLLKEHQLPLKAVLLTGSNTAKEKRE 357

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
              +IA G+A +IIGTHAL Q+ ++Y  L LVI DEQHRFGVQQR  L++K T PHVL+M
Sbjct: 358 RCAQIASGEAKLIIGTHALIQEKVEYENLALVITDEQHRFGVQQREDLSKKGTRPHVLVM 417

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL +   GD+DIS + E PA R PIK  ++  +        ++  + EG++ Y
Sbjct: 418 SATPIPRTLAIILYGDLDISVMDELPAKRLPIKNCVVDTSYRPRAYHFIQKQVEEGRQVY 477

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP +EE +  +  +V++    L E   S  S+A +HGRM   +K  +M++F     ++
Sbjct: 478 VICPMVEESEGLDAENVIDYTQILKEALPSDISVAYLHGRMKAGEKNKIMEAFAANEIQV 537

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE  S CI +        +
Sbjct: 538 LVSTTVIEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEHQSYCIFV-QGGQDTET 596

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
             RL +L  + DGF IA EDL+ R  G+  
Sbjct: 597 KERLEILVKSNDGFQIAGEDLRLRGPGDFF 626


>gi|325911773|ref|ZP_08174177.1| ATP-dependent DNA helicase RecG [Lactobacillus iners UPII 143-D]
 gi|325476279|gb|EGC79441.1| ATP-dependent DNA helicase RecG [Lactobacillus iners UPII 143-D]
          Length = 673

 Score =  330 bits (845), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 224/700 (32%), Positives = 367/700 (52%), Gaps = 45/700 (6%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  LS++            DLLFY P  +      P ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALSQL------KIKTIYDLLFYFPRRYDSLEIFP-LNELK 58

Query: 66  EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I      S +     R  +K+ ++    +I ++ F+ +   LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175
            I + GK              Y+  +     + ++      E VYSL + +        I
Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFI 160

Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            +A+ + LP LPE I + L  K     +      +H P   KD +    A+    + E  
Sbjct: 161 NQAIEKYLPQLPEVIPQYLRDKYKLLDVQSMIIQMHQP---KDLQQVKVAQRTAIFLEFF 217

Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q+ L  L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   R
Sbjct: 218 VFQLQLSQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKR 277

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   
Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++T +     +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +
Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K     +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++ 
Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532
            +   L +G + Y + P I E  + + ++    +  +  +F S  +A++HG+M+   K  
Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMASSQKSD 517

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S C
Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYC 577

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           I +  P  + ++  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     +
Sbjct: 578 IFVSDPK-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINN 636

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            ++   A+K++K ++ Q+P+L    G+    L  L +Y++
Sbjct: 637 YNIFTTAQKESKILVHQNPELV---GEEYDFLKLLMEYDD 673


>gi|19110483|dbj|BAB85789.1| RecG [Corynebacterium glutamicum]
          Length = 707

 Score =  329 bits (844), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 214/641 (33%), Positives = 342/641 (53%), Gaps = 62/641 (9%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEI 101
           +LL +H   +        I + +E  +VTI G ++    S+    +  YK+ +   T  I
Sbjct: 33  ELLRHHVRKYSHHGSGVGIGDATEGDLVTIVGQVAFAKQSYTQSGKMLYKVTVLTETERI 92

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI----------------- 144
            + FF  K   +  +  EG +   TGK+K  +N   + HP +I                 
Sbjct: 93  GISFFGAK--HIPRLLPEGTRALFTGKVKFFRNEPQLSHPEFIVIPDPGSGRRLTATGGM 150

Query: 145 -----FHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPVLPE---WIEKD 192
                + + ++V   L++     +Y+    ++       +   L  +PV+ +   W  K 
Sbjct: 151 KSLAAYGDVEEVALRLVDREYIPIYAGTATMTTWRIMAAVQRVLETMPVIKDHIGWCPK- 209

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
                + PS A     ++ P +               Y+E L+    + + R   K    
Sbjct: 210 ACPVSTRPSAAFTIQAMNLPARLSTV---------CKYNEALSLATVMAIRRADTKNRKA 260

Query: 253 IPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            P+    K  Q +L + + F  T  Q+   ++I  D+ Q+  M R+LQG+VGSGKT+V+L
Sbjct: 261 PPMPRALKGHQHMLIDALNFQLTVGQKQCDREISADIEQRVPMSRLLQGEVGSGKTIVSL 320

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALE 369
           IAM  A+++G Q  ++AP  +LA QH   + K   +    I V ++TG+MP   +++AL 
Sbjct: 321 IAMLQAIDSGRQCAMLAPTEVLATQHARSLSKTLDDAGLDINVVLLTGSMPTGAKKEALL 380

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLM 426
            I  G A I++GTHAL QD+++++ L LV+VDEQHRFGV+QR +L  K      PH+L+M
Sbjct: 381 EIISGDADIVVGTHALIQDTVEFFDLGLVVVDEQHRFGVEQRDQLRTKGREGLTPHLLVM 440

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGK 483
           TATPIPRT+ +T  GD+ +S + E P GR+PI+T +IP ++   +    ER+   +  G+
Sbjct: 441 TATPIPRTIAMTVFGDLAVSTLRELPGGRRPIQTSVIPDHKPGWVKRGWERIGEEVLAGR 500

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY +CP+IE +       V+E    L E      ++ ++HGRM    K+SVM  F  G 
Sbjct: 501 QAYVVCPRIEGEG-----GVLEIHAYLSEQVYPGLNVGMLHGRMDTDLKDSVMQEFAQGE 555

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ATTVIEVGIDV +A++++I  AE FG++Q+HQLRGRVGRG+  S C+L  H    
Sbjct: 556 IDILVATTVIEVGIDVANATVMLIREAERFGVSQIHQLRGRVGRGQHDSLCLL--HTTFD 613

Query: 602 KNS--YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           ++S    RL+ +  T DGF ++E DL+ R+EG++LG +QSG
Sbjct: 614 EDSPQGQRLAAISTTTDGFQLSELDLQVRQEGDVLGTRQSG 654


>gi|111225168|ref|YP_715962.1| ATP-dependent DNA helicase recG [Frankia alni ACN14a]
 gi|111152700|emb|CAJ64443.1| ATP-dependent DNA helicase recG [Frankia alni ACN14a]
          Length = 725

 Score =  329 bits (844), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 216/685 (31%), Positives = 352/685 (51%), Gaps = 69/685 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS--QHSSFQLQKRRPYKILLNDGTGE 100
           DLL + P  + +R     ++++     VT+   +   +    +  +R   ++ + DGT  
Sbjct: 31  DLLAHLPRRYHERGELTDLADLVVGDTVTVQARVEKIERRPMRGSRRSMLRVTVTDGTHP 90

Query: 101 ITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ---DVN-- 152
           + L FF   +R+ ++       G      GK+ + +    + +P      S+   DV   
Sbjct: 91  LALTFFNQSWRERDLRA-----GTTALFAGKVDEYRGHRQLTNPEVQLLESEVEGDVTGA 145

Query: 153 ------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
                  P+  A   +P+        + +  AL  L  L + + +DL ++    ++AEA+
Sbjct: 146 QFANALVPIYPAAAKVPSWT----LARCVRLALDSLGPLEDPLPEDLRRRHRLCTLAEAY 201

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK--QFKKEIGIPINVEGKIAQK 264
            ++H P    +    +  R+RL +DE L  Q+AL   R+  Q           +G +A  
Sbjct: 202 RLVHQPSSRVEV---ATGRKRLTWDEALVLQVALARRRRDVQALATTARSARPDGLLA-A 257

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
               +PF  T  Q      I  D+ +   M R+LQG+VGSGKT+VAL +M   V+AGGQA
Sbjct: 258 FDAALPFPLTAGQREVGATIAADIGRPVPMHRLLQGEVGSGKTVVALRSMLIVVDAGGQA 317

Query: 325 VIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKALERI 371
           V++AP   LA QHY  +++               Q T++I  ++TG+M    RR+AL  I
Sbjct: 318 VLLAPTETLAAQHYRSLREMLGDLARSGELGADEQATRVI--LVTGSMGARARREALADI 375

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATP 430
           + G A +++GTHAL  + + +  L L+IVDEQHRFGV+QR  L  +    PH+L+MTATP
Sbjct: 376 SEGSAGLVVGTHALLHEEVVFADLGLIIVDEQHRFGVEQRDALRARGRRPPHLLVMTATP 435

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYW 487
           IPRT+ +T  GD+++S++TE P+GR PI T ++P    +  D +  R++  ++ G++AY 
Sbjct: 436 IPRTVAMTVFGDLEVSELTELPSGRSPIATFVVPAAIRSWADRMWGRIRDEVAAGRQAYV 495

Query: 488 ICPQI-------------EEKKESNFRSVVERFNSLHEHFTSSIA-----IIHGRMSDID 529
           +CP+I             +E      R      + L +     +A      +HGR+    
Sbjct: 496 VCPRIGGDSLDDDPGALSDEPAGQTGRPAATVTDVLPQLMDGELAGLRVEPLHGRLPAAQ 555

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E+ M  F  G   +L+ATTVIEVG++V +A+++++ +A+ FG++QLHQLRGRVGRG   
Sbjct: 556 REATMTRFAQGEIDVLVATTVIEVGVNVPNATVMVVLDADRFGVSQLHQLRGRVGRGTAP 615

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
             C+L         ++ RL  +  T DG  +A  DL QR+EG++LG  QSG  + L    
Sbjct: 616 GWCLLHTATDQGTPAWHRLGAVAATNDGAELARLDLAQRREGDVLGAAQSGGRRSLKLLA 675

Query: 650 ELHD-SLLEIARKDAKHILTQDPDL 673
            L D  L+  AR +A  ++  DP+L
Sbjct: 676 LLRDEDLIREARTEATRLVDADPEL 700


>gi|213964624|ref|ZP_03392824.1| ATP-dependent DNA helicase RecG [Corynebacterium amycolatum SK46]
 gi|213952817|gb|EEB64199.1| ATP-dependent DNA helicase RecG [Corynebacterium amycolatum SK46]
          Length = 716

 Score =  329 bits (844), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 220/655 (33%), Positives = 346/655 (52%), Gaps = 68/655 (10%)

Query: 71  TITGYISQHS-----SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           TIT  +  HS     +F   +R+P KI ++DG   +    F    E L+N+   G ++ +
Sbjct: 63  TITTVVEVHSIAPAPAFA-DRRKPLKIYVSDGVRILPAAIF--GAEWLRNMLHPGVRLLI 119

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL--PTGLSVDLFK--KIIVEALSR 181
            G + + +N + +          ++V+  +++A  S+   TG    L K  K I E + R
Sbjct: 120 VGTLSEFRNELQL----------KNVDCMVLKADGSVGAATGKLATLTKTAKGIAE-MQR 168

Query: 182 L---PVLP---------------------EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           L   P LP                     EW+    LQ    P+  E      +  +   
Sbjct: 169 LLTRPYLPIYRGRKGVAGIHLALYMQRILEWLP---LQPDPLPATPEGLTDFDSALRGAH 225

Query: 218 FEWTSP---ARERLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIAQKILRNIPFS 272
           F   +    A  RL YDE L  Q+A+   RK+ +  +  P  + V G +  ++ R +PFS
Sbjct: 226 FPSIAGPDIALARLKYDEALELQLAVG-ARKRTQASLTAPACMEVAGGLRDELRRGLPFS 284

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q +   DI  DM++ N M R+L G+VGSGKT+VAL+ M  AV+A  Q  ++AP  +
Sbjct: 285 LTDGQVAVAADIAHDMARPNPMNRLLAGEVGSGKTVVALLGMLQAVDASRQCAMLAPTEV 344

Query: 333 LAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
           LAQQHY  +    +     + V ++TG+M    RR  L    +G+A I++GTHAL  + +
Sbjct: 345 LAQQHYRSLTAMLEQAGVAVTVRLLTGSMSTKERRATLLEAVNGEADIVVGTHALLSEGV 404

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISK 447
           +++ L LV+VDEQHRFGV+QR +L  +      PH+L+M+ATPIPRT+ +T  GD+ +S+
Sbjct: 405 EFFDLGLVVVDEQHRFGVRQRDQLRSRGRGGMTPHLLVMSATPIPRTVAMTIFGDLAVSQ 464

Query: 448 ITEKPAGRKPIKTVIIPI---NRID-EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           +TE P GR+ I++ ++P     R +    ER+   +++G +A+ +CP+I   +E      
Sbjct: 465 LTELPRGRQEIQSFVVPTLEKPRWEARTWERIAEEVAKGNRAFIVCPRITRDEEQFLDES 524

Query: 504 VER-FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           VE  F+   +      I+ +HG M+  DK+ VM +F  G   +L++TTVIEVG+DV +A+
Sbjct: 525 VEAVFDRARKKLPGVRISQLHGNMAPEDKDRVMQAFATGQLDVLVSTTVIEVGVDVPEAT 584

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
           I++I  AE +G++Q+HQLRGRVGRG++   C L  H        TRL  +  T DG  +A
Sbjct: 585 IMMIRRAESYGISQIHQLRGRVGRGDQGGLCFLCTHTHSQTPERTRLERIAATTDGIQLA 644

Query: 622 EEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           E DL  R  G++LG  QSG+   L +        ++E  R DA  +L  +  L +
Sbjct: 645 ELDLATRSFGDLLGDDQSGLATGLGLVDLTTDGEIIERTRHDATALLDGNEKLVA 699


>gi|328955650|ref|YP_004372983.1| ATP-dependent DNA helicase RecG [Coriobacterium glomerans PW2]
 gi|328455974|gb|AEB07168.1| ATP-dependent DNA helicase RecG [Coriobacterium glomerans PW2]
          Length = 727

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 217/635 (34%), Positives = 327/635 (51%), Gaps = 32/635 (5%)

Query: 91  KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150
           +I L D TG + + FF  K   +      G ++ V GKI+       M  PHY   +   
Sbjct: 100 EISLVDATGVLQVAFF--KQPWIARQIAIGDRLAVLGKIEFAYGFKQMTSPHYERLDPAA 157

Query: 151 VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH 210
               ++  V+ +  GLS    ++II  AL RL    + I  DL  +    S A A   IH
Sbjct: 158 TTGSILP-VHKVSEGLSTAWMRRIISVALGRLGSFADAIPADLRARHGLMSAARAMRAIH 216

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            P     F     AR RLAYDE+L  Q+AL L        +    ++     + +  ++P
Sbjct: 217 FP---VSFVERDAARRRLAYDEILILQLALRLRNDANLLGVRPSAHLVASHVRALRESLP 273

Query: 271 FSPTKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           F  T  Q+ A  +IL+DM+  +R++ R+L GDVG+GKT VA I +A   +   QA +MAP
Sbjct: 274 FQLTDEQQRASDEILRDMADPDRIMNRLLLGDVGTGKTAVACIGLACVADTETQACVMAP 333

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
            G+LA+QH            +   ++TG+   A R   + R+A G+  ++ GTHA+  + 
Sbjct: 334 TGVLAEQHAARCGSILDKAGVTWALLTGSTTPAERADIVSRLADGKLCVLFGTHAVLGED 393

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L LV++DEQHRFGV QR  L  K     +L+MTATPIPRT+ L+  GD+D S I 
Sbjct: 394 VCFRHLSLVVIDEQHRFGVNQRNMLRAKGIGADLLVMTATPIPRTMALSVFGDLDTSVIR 453

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---------- 499
            +P     + T ++  +  D  I  L+  ++ G++AY ICP +E   + +          
Sbjct: 454 HRPIAGAGVATRVLSESSRDIAIGALRDAIARGEQAYVICPLVEPTDQGDDLEEVFEDED 513

Query: 500 -----------FRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                       R+V +    L +   T+ IA +HGRM   +K+ V+ +F++G   +L++
Sbjct: 514 ARDSGSSQAAPLRNVEQEAERLRQVLGTARIARLHGRMPPREKDRVITAFRSGEIDVLVS 573

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605
           TTV+EVG+DV  A++++IEN E FGLA LHQLRGRVGRG    +C +L      L+  + 
Sbjct: 574 TTVVEVGVDVGGATVMVIENGERFGLATLHQLRGRVGRGSTPGTCFILTRAAGKLNVQAR 633

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL  L+ T DGF +AE DL+ R EGEILG++Q G         +    L+E A  DA  
Sbjct: 634 VRLRALERTSDGFALAEMDLRLRHEGEILGLRQHGGVSLRYVDFDADTDLIEWAHDDAIE 693

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +L     L S R   +R L  + +Y + F+ +  G
Sbjct: 694 LLGSSGGLRSARTVPLR-LEVIDRYGDVFKEVSGG 727


>gi|312874448|ref|ZP_07734478.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 2052A-d]
 gi|311090060|gb|EFQ48474.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 2052A-d]
          Length = 673

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 224/700 (32%), Positives = 366/700 (52%), Gaps = 45/700 (6%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  LS++            DLLFY P  +      P ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALSQL------KIKTIYDLLFYFPRRYDSLEIFP-LNELK 58

Query: 66  EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I      S +     R  +K+ ++    +I ++ F+ +   LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175
            I + GK              Y+  +     + ++      E VYSL + +        I
Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFI 160

Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            +A+ + LP LPE I + L  K     +      +H P   KD +    A+    + E  
Sbjct: 161 NQAIEKYLPQLPEVIPQYLRDKYKLLDVQSMIIQMHQP---KDLQQVKVAQRTAIFLEFF 217

Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q+ L  L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   R
Sbjct: 218 VFQLQLSQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKR 277

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   
Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++T +     +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +
Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K     +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++ 
Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532
            +   L +G + Y + P I E  + + ++    +  +  +F S  +A++HG+M    K  
Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSD 517

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S C
Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYC 577

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           I +  P  + ++  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     +
Sbjct: 578 IFVSDPK-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINN 636

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            ++   A+K++K ++ Q+P+L    G+    L  L +Y++
Sbjct: 637 YNIFTTAQKESKILVHQNPELV---GEEYDFLKLLMEYDD 673


>gi|309804299|ref|ZP_07698376.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LactinV
           11V1-d]
 gi|308163702|gb|EFO65972.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LactinV
           11V1-d]
          Length = 673

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 224/700 (32%), Positives = 366/700 (52%), Gaps = 45/700 (6%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  LS++            DLLFY P  +      P ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALSQL------KIKTIYDLLFYFPRRYDSLETFP-LNELK 58

Query: 66  EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I      S +     R  +K+ ++    +I ++ F+ +   LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175
            I + GK              Y+  +     + ++      E VYSL + +        I
Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFI 160

Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            +A+ + LP LPE I + L  K     +      +H P   KD +    A+    + E  
Sbjct: 161 SQAIEKYLPQLPEVIPQYLRDKYKLLDVKSMIIQMHQP---KDLQQVKVAQRTAIFLEFF 217

Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q+ L  L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   R
Sbjct: 218 VFQLQLSQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKR 277

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   
Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++T +     +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +
Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K     +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++ 
Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532
            +   L +G + Y + P I E  + + ++    +  +  +F S  +A++HG+M    K  
Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSD 517

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S C
Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYC 577

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           I +  P  + ++  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     +
Sbjct: 578 IFVSDPK-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINN 636

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            ++   A+K++K ++ Q+P+L    G+    L  L +Y++
Sbjct: 637 YNIFTTAQKESKILVHQNPELL---GEEYDFLKLLMEYDD 673


>gi|296171354|ref|ZP_06852710.1| DNA helicase RecG [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894185|gb|EFG73943.1| DNA helicase RecG [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 739

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 220/697 (31%), Positives = 363/697 (52%), Gaps = 80/697 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERI-----VTITGYISQHSSFQLQK---RRPYKILL 94
           DLL ++P ++ +   R    +  ++R      +TI   I++  ++ ++K   +  ++I L
Sbjct: 31  DLLRHYPRTYTEGATR---WDADDQRPPAGEHITIVDTIAETKTWPMKKTPKKDCHRITL 87

Query: 95  NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-- 152
             G  ++T  FF      LK    +G K+ ++G++   KN + + HP ++  +S D    
Sbjct: 88  GSGRNKVTATFF--NANYLKKDLTKGAKVMLSGEVGFFKNVMQLTHPAFLILDSPDGKNR 145

Query: 153 ----------------------------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
                                       FP+  A   +    S D+F+  + + L  L  
Sbjct: 146 GTSSLKNIAIASQATSGELQMEAFERAFFPIYPATTKVQ---SWDIFR-CVRQVLDVLDP 201

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           +P+ +  +L  +    S   A   IH    A+D      ARERL +DE +  Q AL+  R
Sbjct: 202 VPDPLPAELRGRYDLVSEDRALRDIH---LAEDESARRRARERLTFDEAVGLQWALVARR 258

Query: 245 KQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
                E G P       ++ +++  +PF  T  Q   ++   +++S    M R+LQG+VG
Sbjct: 259 HSELSESGPPAPPRPDGLSAELMARLPFELTAGQREVLEVFTKELSATRPMNRLLQGEVG 318

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIV 352
           SGKT++A++AM   V+AG Q  ++AP  +LA QH   I                +    V
Sbjct: 319 SGKTILAVLAMLQLVDAGYQCALLAPTEVLAAQHLRSIDDVLGPLAMAGQLGGADNATRV 378

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+M  A +++  + +A GQA I++GTHAL QD+++++ L +V+VDEQHRFGV+QR 
Sbjct: 379 ALLTGSMTAAQKKQVRDEVASGQAGIVVGTHALLQDAVEFHNLGMVVVDEQHRFGVEQRD 438

Query: 413 KLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467
           +L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E P GR+PI + +I +    
Sbjct: 439 QLRAKARPGVTPHLLVMTATPIPRTVALTVYGDLETSTLRELPRGRQPITSNVIFVKDKP 498

Query: 468 --IDEVIERLKVVLSEGKKAYWICPQIEE----KKESNFRSVVERFNSLHEHFTSS---- 517
             +D    R+   +S G++AY + P+I+E    +KE       E    L+    S     
Sbjct: 499 AWLDRAWRRITEEVSAGRQAYVVAPRIDENDEPEKEEPSAKPSETAEGLYARLRSGELAN 558

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HGR+S   K++ M +F+ G   +L+ TTVIEVG+DV +A+++++ +A+ FG++Q
Sbjct: 559 LRLGLMHGRLSAEQKDAAMAAFRAGEIDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQ 618

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGR+GRG   S C+L      +  +  RLS +  T DGF +A+ DLK+R+EG++LG
Sbjct: 619 LHQLRGRIGRGRHPSLCLLASWVSPASPAGRRLSAVAATLDGFALADLDLKERREGDVLG 678

Query: 636 IKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDP 671
             QSG    L +     H  ++E AR        +DP
Sbjct: 679 RNQSGRAVNLRLLSLADHREVIEAARDFCVRTYAEDP 715


>gi|254821178|ref|ZP_05226179.1| ATP-dependent DNA helicase RecG [Mycobacterium intracellulare ATCC
           13950]
          Length = 739

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 221/722 (30%), Positives = 371/722 (51%), Gaps = 87/722 (12%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI-----VTIT 73
           VG K    L ++      N     DLL ++P S+ +   R    +  +ER      +TI 
Sbjct: 12  VGGKVVELLDEVFGIRTVN-----DLLRHYPRSYTEGASR---WDADDERPPAGEHITIV 63

Query: 74  GYISQHSSFQLQK---RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
             I+   +F ++K   +  ++I L  G  ++T  FF      +K     G K+ ++G++ 
Sbjct: 64  DTITDTETFPMKKTPKKVCHRITLGSGRNKVTATFF--NANYIKKDLTTGTKVMLSGEVG 121

Query: 131 KLKNRIIMVHPHYIFHNSQD------VNFPLIEAVYSLPTGLSV-DLFKK---------- 173
             +N + + HP ++  ++ D      V+   I       TG  + D +++          
Sbjct: 122 FFRNVMQLTHPAFLLLDTPDGKNRGTVSLKSIANASHATTGEDIADAYQRHFFPIYAASA 181

Query: 174 ---------IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH----NPRKAKDFEW 220
                     + + L  L  +P+ + +DL  K    S  +A   IH     PR+ +    
Sbjct: 182 KLQSWTIFATVRQVLDVLDPVPDPLPEDLRAKFGLVSEDQALRDIHLAESEPRRQQ---- 237

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQES 279
              ARERL +DE +  Q AL+  R     E G P       +A ++L  +PF  T  Q  
Sbjct: 238 ---ARERLTFDEAVGLQWALVARRHGELSESGPPAPPRSDGLAAELLGRLPFELTAGQRD 294

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            +  + + ++    + R+LQG+VGSGKT+V+++AM   V+AG Q  ++AP  +LA QH  
Sbjct: 295 VLGVLSEGLASNRPLNRLLQGEVGSGKTIVSVLAMLQMVDAGYQCALLAPTEVLAAQHLR 354

Query: 340 FIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            I+               +    V +++G+M  A +++    IA G+  I++GTHAL QD
Sbjct: 355 SIRDVLGPLAMAGQLGGADRATRVALLSGSMTAAQKKQIRSEIAGGEVGIVVGTHALLQD 414

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDI 445
           ++++  L +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ 
Sbjct: 415 AVEFDNLGMVVVDEQHRFGVEQRDQLRAKARPGVTPHLLVMTATPIPRTVALTVYGDLET 474

Query: 446 SKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEK-----K 496
           S + E P GR+PI + +I +      +    +R+   ++ G++AY + P+I+E      +
Sbjct: 475 STLRELPRGRQPITSNVIFVKDKPTWLGRAWQRISEEVAAGRQAYVVAPRIDEDDDPGAQ 534

Query: 497 ESNFRSVVERFNSLHEHFTSS------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E N ++  E    L+    S       + ++HGR+S  +K++VM +F+ G   +L+ TTV
Sbjct: 535 EQNAKAP-ETAEGLYARLRSGELAHLRLGLMHGRLSGDEKDAVMAAFRAGEIDVLVCTTV 593

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           IEVG+DV +A+++++ +A+ FG++QLHQLRGR+GRG   S C+          +  RL+ 
Sbjct: 594 IEVGVDVPNATVMLVMDADRFGISQLHQLRGRIGRGRHPSLCLFASWSAPDSPAGRRLAA 653

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQ 669
           +  T DGF +A+ DLK+R+EG++LG  QSG    L +     H   +E AR+      ++
Sbjct: 654 VAGTLDGFALADLDLKERREGDVLGRNQSGRAITLRLLSLADHLEYIEAAREFCVRTYSE 713

Query: 670 DP 671
           DP
Sbjct: 714 DP 715


>gi|325068483|ref|ZP_08127156.1| ATP-dependent DNA helicase RecG [Actinomyces oris K20]
          Length = 752

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 233/757 (30%), Positives = 370/757 (48%), Gaps = 94/757 (12%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           VGK+ +  L+K        ET   DLL   P  +        +  + E    TI   + +
Sbjct: 5   VGKRTAAQLAK-----QGVET-GADLLRLLPRRYDTWGELTDMRTLVEGEQATIQAQVVR 58

Query: 79  HSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNV--FFEGRKITVTGKIKKLK 133
            SS + +  R   ++   + DG   + L+ F    +M         G  + ++GK+   +
Sbjct: 59  ASSRRTRSGRVPALMEATVTDGASTMDLVQFGAAGQMRTRAAQLAPGTTVLLSGKVGLHR 118

Query: 134 NRIIMVHPHYIFHNSQDVN---------FPLIEAVYSLPTGLSVDLFKKII--VEALSRL 182
            R  + +P     +  D            P+     +LP+ L     + ++  +E+    
Sbjct: 119 GRKQLSNPRLYVLDELDEGEREALLARPMPIYPGTEALPSWLVAKAVRSVLDQLESGDVA 178

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             LPE    +L ++        A+  +H P  +   +W + AR+RL ++E L  Q+AL  
Sbjct: 179 DPLPE----ELRREAGLVDAYTAYRWVHRPEDSG--QWKA-ARKRLRHEEALILQVALAQ 231

Query: 243 MR---KQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
            R   +  +  +  P+   EG +   +   +P+  T  Q+   ++I  D+++   M R+L
Sbjct: 232 RRAHHEATRTAVAWPVPETEGSLRADLDARLPYDLTAGQKRVGEEISADLARTVPMQRLL 291

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII------- 351
           QGDVGSGKTLVAL AM   V  GGQA ++AP  +LA QH+  ++        +       
Sbjct: 292 QGDVGSGKTLVALRAMLQVVGGGGQAALLAPTEVLAAQHHSSLEVVLGPMARLGMLGGAE 351

Query: 352 ----VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
               V ++TG+ P A RR+ L  +A G+  I++GTHAL  D++Q   L LV+VDEQHRFG
Sbjct: 352 HATRVHLLTGSTPAAQRRRILTELAAGEPAIVVGTHALLSDTVQIPFLGLVVVDEQHRFG 411

Query: 408 VQQRLKL----------TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           V QR  L          T ++  PH+L+MTATPIPRT+ +T  GD+  S + E PAGR  
Sbjct: 412 VAQRDALRERGGLTDPATGQSHTPHLLVMTATPIPRTIAMTVFGDLATSVLDELPAGRSA 471

Query: 458 IKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVE---- 505
           + T ++P +R   ++ +  R    ++ G + Y +CP+IE   E      +  + VE    
Sbjct: 472 VPTHLVPWSRTSWVEGIWRRAAKEVASGGRVYVVCPRIEVDDEPRQTPMDGATTVETDDG 531

Query: 506 -RFNSLHEHFTSS--------------------------IAIIHGRMSDIDKESVMDSFK 538
            +  +L E    S                          + ++ GRMS  DK + M  F 
Sbjct: 532 PKQEALAEEGDGSHPDRPLAAVEEWRRRLEGEPALEGIGVGVLTGRMSSDDKAASMADFA 591

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L++TTVIEVG+DV +AS+++I +AE FGL+QLHQLRGRVGRG   S C+ +   
Sbjct: 592 SGATPVLVSTTVIEVGVDVPEASMMVILDAERFGLSQLHQLRGRVGRGSRPSLCVAVTGA 651

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLE 657
            +   ++ RL    +T DGF +AE DL+ R EG++LG  QSG    L       D+ L+ 
Sbjct: 652 EVGSTAFHRLKAFASTTDGFALAEADLELRSEGDVLGASQSGHASGLDLLRVTRDARLIA 711

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
            AR+ A+ I+  DP L+  R  +  I+  L + ++AF
Sbjct: 712 TARRQAERIVAADPQLSEHRALAAAIVERLDEESQAF 748


>gi|227501790|ref|ZP_03931839.1| RecG family helicase [Corynebacterium accolens ATCC 49725]
 gi|227077815|gb|EEI15778.1| RecG family helicase [Corynebacterium accolens ATCC 49725]
          Length = 708

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 196/499 (39%), Positives = 296/499 (59%), Gaps = 32/499 (6%)

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR--ERLAYDELLA-GQIALLLMRKQF 247
           ++ L ++   S+ +A   IH P  A       P R  +RL Y+E L+ G +  L  R   
Sbjct: 209 REPLDQQMIISLDQAVREIHEPGAA------GPQRAVQRLKYNEALSIGLVMALRQRDAH 262

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
                    + G   +++L ++PF  T+ Q   I +I  D+S    M+R+LQG+VGSGKT
Sbjct: 263 AHTAPAMPAILGGFREELLTHLPFELTQGQRRVITEIDDDLSGSLPMMRLLQGEVGSGKT 322

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA  AM  A++AG QA ++AP  +LA QH   I         +V ++TG+M  A +R+A
Sbjct: 323 MVATCAMLQAIDAGSQAALLAPTEVLASQHAASIGTSVPEGVKVV-LLTGSMRTAEKRQA 381

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL---TQKATAPHVL 424
           L  I  G+A+I+IGTHA+ Q+S++++ L LVIVDEQHRFGV+QR  L   T++  +PHVL
Sbjct: 382 LLDIVSGEANIVIGTHAIIQESVEFFDLGLVIVDEQHRFGVEQRDSLRSKTREGISPHVL 441

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSE 481
           +MTATPIPRT+ +T  GD+ +S + E P GRKPI++ ++   R   +   +ER++  ++ 
Sbjct: 442 VMTATPIPRTIAMTIFGDLAVSTLAELPGGRKPIQSAVVAEWRPIWVARALERIREEVAH 501

Query: 482 GKKAYWICPQIEEKKESNFRSVVER-----FNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           G +AY +CP+IE   E     + E+     F  L       + I+HG+M +  K+ VM S
Sbjct: 502 GHQAYIVCPRIE--GEGGVLELAEQLAAGPFKGLR------VDILHGKMPN--KDEVMTS 551

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   +L++TTVIEVG+DV +A++++I  AE+FG++QLHQLRGRVGRG   S C+L  
Sbjct: 552 FARGEIDILVSTTVIEVGVDVPNATVMLIREAENFGVSQLHQLRGRVGRGGNASICLLHT 611

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SL 655
               +  SY R++ +  T  GF +AE DL+QR EG+ILG  QSG  + L       D  +
Sbjct: 612 KAEDNSASYRRITQIAQTSSGFDLAELDLRQRHEGDILGAVQSGTHRTLRLLNLADDQDI 671

Query: 656 LEIARKDAKHILTQDPDLT 674
           +E    DA  ++ ++P L 
Sbjct: 672 VERTHADAYAMVQRNPQLA 690


>gi|120403147|ref|YP_952976.1| ATP-dependent DNA helicase RecG [Mycobacterium vanbaalenii PYR-1]
 gi|119955965|gb|ABM12970.1| ATP-dependent DNA helicase RecG [Mycobacterium vanbaalenii PYR-1]
          Length = 752

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 224/705 (31%), Positives = 355/705 (50%), Gaps = 99/705 (14%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH-YRPKISEISEERIVTITGYIS 77
           +GKK +  L + +     N     DLL Y P  + D    R +  ++     VT    I 
Sbjct: 12  LGKKAADNLEEHLGLRTVN-----DLLRYFPRKYSDAMTVRGEGEDLEVGEHVTFVDVID 66

Query: 78  QHSSFQLQKRRPYK----ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
             +  +  + +P +    + L D   ++T  FF  K   LKN   EG K+ ++G++   +
Sbjct: 67  A-AELKRVRNQPSREFLVVTLRDRRPKVTATFFNPK--YLKNTLVEGAKVMLSGEVGYYR 123

Query: 134 NRIIMVHPHYIFHNSQDVN-----------------------------FPLIEAVYSLPT 164
             + + HP ++  NS                                 FP+  A   + T
Sbjct: 124 GTMQLTHPAFMVLNSASGKKIGTKSLTSVASTTDATGDELLAEFEKDYFPIYGATAKVQT 183

Query: 165 GLSVDLFKKI--IVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
               D++  +  ++  L  +P  LPEW     +++ +  S  EA   +H    A+D +  
Sbjct: 184 ---WDIYACVRQMLAVLDPVPETLPEW----FVREHNLMSEDEALRAVHLSENAEDRDR- 235

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQESA 280
             A ERL +DE +  Q  L++ R       G P    G  +   ++  +PF  T  Q   
Sbjct: 236 --AIERLTFDEAVGLQWGLVVRRHSELSASGPPAKRRGDGLMAAMMAQLPFELTTGQREV 293

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           ++ I  ++S    M R+LQG+VGSGKT+V+L+AM   ++AG Q  ++AP  +LA QH   
Sbjct: 294 LEVISAELSAPRPMNRMLQGEVGSGKTVVSLLAMLQMIDAGYQCALLAPTEVLAAQHALS 353

Query: 341 IKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I+               +    V ++TG+M    +R A   +A G+A I+IGTHAL QD+
Sbjct: 354 IRSMLGPLATAGELGGADNATRVALLTGSMTAQQKRDARREVASGEAGIVIGTHALLQDT 413

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDIS 446
           +++  L +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ S
Sbjct: 414 VEFDNLGMVVVDEQHRFGVEQRDRLRAKAPEGITPHLLVMTATPIPRTVALTIYGDLETS 473

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE----GKKAYWICPQIEEKKESNFR- 501
            + E P GR+PI T  I   +    +ER    ++E    G++AY +  +I+E  + +   
Sbjct: 474 ILRELPRGRQPITTNTIFQTQKPAWLERAWARIAEEVKAGRQAYVVASRIDEDDKPSDED 533

Query: 502 ----------------------SVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSF 537
                                 +VVE F  L     S +   ++HGR+S  +K +VM +F
Sbjct: 534 KKDDGKAKKAKKATKEQGPPPVTVVEMFARLQRGLLSDLRLGLMHGRLSGDEKAAVMSAF 593

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + G   +L+ TTVIEVG+DV +A+++++ +A+ FG++QLHQLRGR+GRGE  S C+L+  
Sbjct: 594 RRGEIDVLVCTTVIEVGVDVPNATVMVVMDADRFGISQLHQLRGRIGRGEHPSLCLLVTK 653

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
            P S  +  RL  +  T DGF +A+ DL++R EG++LG  QSG P
Sbjct: 654 LPESSKAGQRLKAVAGTLDGFALADLDLRERSEGDVLGYYQSGRP 698


>gi|203284487|ref|YP_002222227.1| DNA recombinase [Borrelia duttonii Ly]
 gi|203288021|ref|YP_002223036.1| DNA recombinase [Borrelia recurrentis A1]
 gi|201083930|gb|ACH93521.1| DNA recombinase [Borrelia duttonii Ly]
 gi|201085241|gb|ACH94815.1| DNA recombinase [Borrelia recurrentis A1]
          Length = 687

 Score =  328 bits (840), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 218/665 (32%), Positives = 338/665 (50%), Gaps = 20/665 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           FL+     L    G+G +       I    N   T   +L+ Y+P  + DR       + 
Sbjct: 2   FLHEFQYGLQGINGLGSR------GIDRLNNIRITNVKELIEYYPKKYEDRKNMAAFPDP 55

Query: 65  SEERIVTITGYIS--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + RI  +    +  +H  F    +R  KI+      E+  +  + ++  L+ +F  G+K
Sbjct: 56  LQVRICELMTIFTVIEHRDFGNTFKRNLKIIGRSENSELFEILLFNRS-FLERIFKIGQK 114

Query: 123 ITVTGKIKKLKNRIIMVHPHY---IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             +  +        +    ++   IF +   V F  I  VYSL  GLS       +  AL
Sbjct: 115 FYIYARFSYNDYTKMWSCSNFDSEIF-SYNPVKFKKIMPVYSLSEGLSSKKISSYVKGAL 173

Query: 180 SRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           +      +  I K L+ K S  S+ EA N IH P      E    A++ L Y E+   Q 
Sbjct: 174 AYFVKFGQSDIPKFLINKYSLLSLHEALNEIHFP---SSLEMLRRAKKTLVYREIFLLQ- 229

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
                 K ++  +    N+   + ++I+  + F  T+ Q+ AI +I+ D+     M R+L
Sbjct: 230 -FFSRGKSYRVFLRAEKNLSNDLLKQIISKLSFELTRDQKIAITEIINDLKNNKPMNRLL 288

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVA ++    +EAG Q   M P  +LA+QHY  +    ++  I V ++TG+
Sbjct: 289 QGDVGSGKTLVAFLSSIPLIEAGYQVAFMVPTDLLARQHYNSLTNILKDFDISVVLLTGS 348

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           + +  R + LE+I  G   ++IGTHA+F    ++  L  VI+DEQH+FGV+QR +L  K 
Sbjct: 349 LKKKDRDEVLEKIQSGICSLVIGTHAIFSQGTKFKNLAYVIIDEQHKFGVEQREELRNKG 408

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               VLLM+ATPIPR+L LT  GD+++S I   P GR P+ T +      ++V E LK  
Sbjct: 409 EEVDVLLMSATPIPRSLALTLFGDLEVSLIKRGPEGRLPVTTYLAKHGNEEKVYEFLKNE 468

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L +G + Y++ P I   ++ N +       +L   F   S+A+IH ++    KE +M +F
Sbjct: 469 LGKGHQVYFVYPLISSSEKFNLKDATSMCLNLQNIFVEYSVAMIHSKLESYVKEEIMHNF 528

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                 +L+AT+VIEVGID  +A+ +++E+AE FGL+ LHQ+RGRVGR    S   LLY 
Sbjct: 529 YLKKIDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRVGRSNLKSFFFLLYK 588

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PL++    RL  +K   DGF IAEEDLK R  G + G++QSG     I+    H  ++ 
Sbjct: 589 EPLTEAGKFRLKTIKENTDGFKIAEEDLKLRGPGNLFGLEQSGYFNLRISDFVEHKEIIG 648

Query: 658 IARKD 662
           + R +
Sbjct: 649 LMRAE 653


>gi|306835968|ref|ZP_07468960.1| DNA helicase RecG [Corynebacterium accolens ATCC 49726]
 gi|304568134|gb|EFM43707.1| DNA helicase RecG [Corynebacterium accolens ATCC 49726]
          Length = 708

 Score =  327 bits (839), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 195/499 (39%), Positives = 296/499 (59%), Gaps = 32/499 (6%)

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR--ERLAYDELLA-GQIALLLMRKQF 247
           ++ L ++   S+ +A   IH P  A       P R  +RL Y+E L+ G +  L  R   
Sbjct: 209 REPLDQQMIISLDQAVREIHEPGAA------GPQRAVQRLKYNEALSIGLVMALRQRDAH 262

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
                    + G   +++L ++PF  T+ Q   I +I  D+S    M+R+LQG+VGSGKT
Sbjct: 263 AHTAPAMPAILGGFREELLTHLPFELTQGQRRVITEIDDDLSGSLPMMRLLQGEVGSGKT 322

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA  AM  A++AG QA ++AP  +LA QH   I         +V ++TG+M  A +R+A
Sbjct: 323 MVATCAMLQAIDAGSQAALLAPTEVLASQHAASIGTSVPEGVKVV-LLTGSMRTAEKRQA 381

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL---TQKATAPHVL 424
           L  I  G+A+I+IGTHA+ Q+S++++ L LVIVDEQHRFGV+QR  L   T++  +PHVL
Sbjct: 382 LLDIVSGEANIVIGTHAIIQESVEFFDLGLVIVDEQHRFGVEQRDSLRSKTREGISPHVL 441

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSE 481
           +MTATPIPRT+ +T  GD+ +S + E P GRKPI++ ++   R   +   +ER++  ++ 
Sbjct: 442 VMTATPIPRTIAMTIFGDLAVSTLAELPGGRKPIQSAVVAEWRPIWVARALERIREEVAH 501

Query: 482 GKKAYWICPQIEEKKESNFRSVVER-----FNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           G +AY +CP+IE   E     + E+     F  L       + I+HG+M +  K+ VM S
Sbjct: 502 GHQAYIVCPRIE--GEGGVLELAEQLAAGPFKGLR------VDILHGKMPN--KDEVMTS 551

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   +L++TTVIEVG+DV +A++++I  AE+FG++QLHQLRGRVGRG   S C++  
Sbjct: 552 FARGEIDILVSTTVIEVGVDVPNATVMLIREAENFGVSQLHQLRGRVGRGGNASICLMHT 611

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SL 655
               +  SY R++ +  T  GF +AE DL+QR EG+ILG  QSG  + L       D  +
Sbjct: 612 KAEENSASYRRITQIAQTSSGFDLAELDLRQRHEGDILGAVQSGTHRTLRLLNLADDQDI 671

Query: 656 LEIARKDAKHILTQDPDLT 674
           +E    DA  ++ ++P L 
Sbjct: 672 VERTHADAYAMVQRNPQLA 690


>gi|302191502|ref|ZP_07267756.1| ATP-dependent DNA helicase RecG [Lactobacillus iners AB-1]
          Length = 673

 Score =  327 bits (839), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 222/700 (31%), Positives = 366/700 (52%), Gaps = 45/700 (6%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  LS++            DLLFY P  +      P ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALSQL------KIKTIYDLLFYFPRRYDSLETFP-LNELK 58

Query: 66  EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I      S +     R  +K+ ++    +I ++ F+ +   LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175
            I + GK              Y+  +     + ++      E VYSL + +        I
Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLREEGFEPVYSLNSHIKQKKLVSFI 160

Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            +A+ + LP LPE I + L  K     +      +H P   KD +    A+    + E  
Sbjct: 161 SQAIEKYLPQLPEVIPQYLRDKYKLLDVKSMIIQMHQP---KDLQQVKVAQRTAIFLEFF 217

Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q+ L  L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   R
Sbjct: 218 VFQLQLSQLLYANDQKNSGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKR 277

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   
Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++T +     +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +
Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K     +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++ 
Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532
            +   L +G + Y + P I E  + + ++    +  +  +F S  +A++HG+M+   K  
Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMASSQKSD 517

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S C
Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGSTQSYC 577

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           I +  P  + ++  RL ++   +DGF +A EDLK R EG++ G  QSG+ +F +     +
Sbjct: 578 IFVSDPK-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDLFGQAQSGIQQFKLGDIINN 636

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            ++   A+K++K ++ Q+P+L    G+    L  L +Y++
Sbjct: 637 YNIFTTAQKESKILVHQNPELV---GEEYDFLKLLMEYDD 673


>gi|222151060|ref|YP_002560214.1| ATP-dependent DNA helicase [Macrococcus caseolyticus JCSC5402]
 gi|222120183|dbj|BAH17518.1| ATP-dependent DNA helicase [Macrococcus caseolyticus JCSC5402]
          Length = 678

 Score =  327 bits (838), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 190/527 (36%), Positives = 308/527 (58%), Gaps = 18/527 (3%)

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           YSL   +    F+K+I  A   + + P ++ + L  +     + ++   +H P   K  +
Sbjct: 148 YSLKGLIKRAQFRKMIDSAFQTVKIQP-FLPEHLKVRYKLWDLDQSLYELHIPSSHKHLQ 206

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---INVEGKIAQKILRNIPFSPTKS 276
               AR   A+ ELL  Q+ + ++ +   ++ G P   ++ +    +  +  +PF  T++
Sbjct: 207 ---QARRSFAFCELLLFQLKMRMLNQL--EQSGAPHSKVDYDITKVKAFIDTLPFELTEA 261

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+  + +I +DM  + RM R+LQGDVGSGKT+VA I M A + AG Q+ +M P  ILA+Q
Sbjct: 262 QKQVVNEIFRDMKHEFRMNRLLQGDVGSGKTIVAAICMYALMTAGRQSALMVPTEILAEQ 321

Query: 337 HYEFIKK-YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           H E + + Y ++  I   ++T ++    RR  LE +  G   II+GTHAL  + +Q+  L
Sbjct: 322 HAESLSEIYGESLNIA--LLTSSIKGKKRRLILEALERGDIDIIVGTHALISEPVQFNDL 379

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LVI DEQHRFGV QR  L +K    +VL MTATPIPRTL ++  G++D+S I + P GR
Sbjct: 380 GLVITDEQHRFGVNQRKLLREKGNDANVLFMTATPIPRTLAISVFGELDVSTIKQMPKGR 439

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF- 514
           KPI T       I+ V ++    +  G++ Y ICP IE  +  + ++  E + +    F 
Sbjct: 440 KPIITEWAKHEEIEIVHDKTAREIRAGRQVYVICPLIEASQHLDVKNATEIYEAYQRLFG 499

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           T  + ++HG+M   +K+ VM+ F+N    ++++TTV+EVG++V +A++I+I +AE FGL+
Sbjct: 500 TDKVGLLHGKMKTEEKDEVMNKFQNHDFDVIVSTTVVEVGVNVPNATMIVIYDAERFGLS 559

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
            LHQLRGRVGR    S CIL+ +P  S+    RL ++  T DGF+++E+DL+ R  G+  
Sbjct: 560 TLHQLRGRVGRSSYQSYCILVGNPE-SETGIERLQIMTQTTDGFVLSEKDLEMRGPGDFF 618

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL----TQDPDLTSVR 677
           GIKQSG+P F +A       +LE+AR +A  ++     + P+L +++
Sbjct: 619 GIKQSGLPDFKVANIVEDYRMLEVARDEASELILSGAIEQPELRALK 665


>gi|329921159|ref|ZP_08277681.1| ATP-dependent DNA helicase RecG [Lactobacillus iners SPIN 1401G]
 gi|328934797|gb|EGG31288.1| ATP-dependent DNA helicase RecG [Lactobacillus iners SPIN 1401G]
          Length = 673

 Score =  327 bits (838), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 223/700 (31%), Positives = 365/700 (52%), Gaps = 45/700 (6%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  L ++            DLLFY P  +      P ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALLQL------KIKTIYDLLFYFPRRYDSLETFP-LNELK 58

Query: 66  EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I      S +     R  +K+ ++    +I ++ F+ +   LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175
            I + GK              Y+  +     + ++      E VYSL + +        I
Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFI 160

Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            +A+ + LP LPE I + L  K     +      +H P   KD +    A+    + E  
Sbjct: 161 NQAIEKYLPQLPEVIPQYLRDKYKLLDVQSMIIQMHQP---KDLQQVKVAQRTAIFLEFF 217

Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q+ L  L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   R
Sbjct: 218 VFQLQLSQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKR 277

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   
Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++T +     +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +
Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K     +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++ 
Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532
            +   L +G + Y + P I E  + + ++    +  +  +F S  +A++HG+M    K  
Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSD 517

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S C
Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGSTQSYC 577

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           I +  P  + ++  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     +
Sbjct: 578 IFVSDPK-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINN 636

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            ++   A+K++K ++ Q+P+L    G+    L  L +Y++
Sbjct: 637 YNIFTTAQKESKILVYQNPELV---GEEYDFLKLLMEYDD 673


>gi|302335847|ref|YP_003801054.1| ATP-dependent DNA helicase RecG [Olsenella uli DSM 7084]
 gi|301319687|gb|ADK68174.1| ATP-dependent DNA helicase RecG [Olsenella uli DSM 7084]
          Length = 720

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 213/662 (32%), Positives = 343/662 (51%), Gaps = 40/662 (6%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP----YKILLNDGTG 99
           LL + P  ++D      +++I+   +      ++     QL++ RP     +I   D TG
Sbjct: 49  LLHHMPHRYLDFSC---VTDIAHADVGDEATVVAVADRVQLKRPRPRMQVVEIFALDATG 105

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKI------KKLKNRIIMVHPHYIFHNSQDVNF 153
            + + FF  +   +     EG +I ++GK+      K+++  ++ V    +       +F
Sbjct: 106 VMQVSFF--RQPWIAEQVKEGDRIALSGKVTFGYGFKQMRAPLLEV----LGPEDDSADF 159

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
             I  V+ +  G++V   ++I+  AL+    + +++   LL        A A   IH PR
Sbjct: 160 ARILPVHPVAEGITVPWMRRIVSAALADAGDVCDFMPSQLLTGHRLMGEARALRAIHFPR 219

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFS 272
              + +    AR RLAYDELL  Q+AL+  ++   + I    +V  G   + +L  +PF+
Sbjct: 220 TLAERDG---ARRRLAYDELLCLQLALVARQRIELRGIEPTCHVTSGPRMRSLLEQLPFA 276

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q  A  DIL DM+    M R+L GDVG+GKT+VA +A+AA  ++  QA +MAP  +
Sbjct: 277 LTDEQRQAADDILADMAAPRVMGRLLLGDVGTGKTVVAALALAAVADSATQAAMMAPTSV 336

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+Q+ E +        I   ++TG      R      +A G   ++ GT A+  D + +
Sbjct: 337 LARQYAERLGPLLDAAGISWGLVTGATAPEERAALAHGVADGTVTVVFGTTAVLSDDMDF 396

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            +L LV++DEQHRFGV QR +L +K  A  +L MTATPIPRTL L+  GD+  S+I  +P
Sbjct: 397 SRLTLVVIDEQHRFGVGQRTRLRRKGAAADLLAMTATPIPRTLALSVYGDMSCSRIRHRP 456

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV---ERFNS 509
                I+T  I    +D     ++  ++ G +AY +CP ++E  + +    V   ER  +
Sbjct: 457 CPGASIETHCIAPESLDLAFGAIREAVAVGHQAYVVCPLVDEHDDGSGLDDVPERERSGA 516

Query: 510 LHEHFTSSIA--------------IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              H  + +A              ++ GRM   +K+  M+ F+ G   +L++TTVIEVG+
Sbjct: 517 TGAHAATQVASDLSRTALSGLSLDLLTGRMGSQEKDEAMERFRAGRTDVLVSTTVIEVGV 576

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A+++++ +A+ FGLA LHQLRGRVGRG+      L         +  RL+ L+ T 
Sbjct: 577 DVPNATVMLVFDADRFGLATLHQLRGRVGRGDSPGVVYLSCAARKGTPARRRLAALEATS 636

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           DG  +AE DL+ R EGE+LG +QSG P    +       L+E A +DA+ I  +DP L+S
Sbjct: 637 DGLELAELDLRLRHEGEVLGYRQSGGPTLKASDLVADADLVEWAHEDARRIAEEDPTLSS 696

Query: 676 VR 677
            R
Sbjct: 697 DR 698


>gi|284992417|ref|YP_003410971.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284065662|gb|ADB76600.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
           DSM 43160]
          Length = 726

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 216/690 (31%), Positives = 360/690 (52%), Gaps = 59/690 (8%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTG 99
           DLL ++P  +  R    ++ ++     VT+   + + ++ ++ + RP    ++ + DG G
Sbjct: 32  DLLRHYPRRYAKRGEMTRLDDLQVGDRVTVLAQVRKVATRKM-RNRPGTLTEVTVGDGAG 90

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH-YIFHNSQDVNFP-LIE 157
            + L+FF R+   L+    EG      G + + +      HP  ++     D ++   + 
Sbjct: 91  SMQLVFFNRRHANLR----EGAWGLFAGTVGEYRRSKQFAHPDCHLITGDDDTDWARALI 146

Query: 158 AVYSLPTGLSVDLFKK---IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            +Y     +S  + +K   ++++A      + + +  +L  +   PS+A A   IH P  
Sbjct: 147 PIYPASKDVSSWVIQKSVRLLLDASGGFGFVEDPLPAELRARHGLPSLAAALLDIHRPTS 206

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSP 273
            +D E    A  RL +DE L  Q+ L   R+    E GI      G +   +   +PF+ 
Sbjct: 207 DEDVER---AGYRLKWDEALTLQLTLAARRRAAALEPGIARPRRPGGLLDAVDAALPFAL 263

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q +  +++  +++++  M R+LQG+VG+GKT+VAL AMA  V+AGGQA ++AP  +L
Sbjct: 264 TDGQCAVGEELAAELAREQPMHRLLQGEVGAGKTVVALRAMAQVVDAGGQAALLAPTEVL 323

Query: 334 AQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           A QH   I                   T+++  ++TG+   A RR+    +A G A I++
Sbjct: 324 AAQHARSIGAMLGPLGRAGELDGDPAGTRVV--LLTGSQKAAARRQGRAAVADGSAGIVV 381

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTS 439
           GTHAL Q+ + +  L LV+VDEQHRFGV+QR  L  K    PHVL+MTATPIPRT+ +T 
Sbjct: 382 GTHALLQEGVDFADLGLVVVDEQHRFGVEQRDALRAKGNRPPHVLVMTATPIPRTVAMTV 441

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEK 495
            GD++ S + + P GR  + + ++P+      +D   ERL+  ++ G++AY +CP+I E 
Sbjct: 442 YGDLETSTLRQLPGGRGGVASSVVPVRDKPAWLDRAWERLREEVAAGRQAYVVCPRIGED 501

Query: 496 KE----------------SNFRSVVERFNSLHEHFTSSIA-----IIHGRMSDIDKESVM 534
                             S+ R  +   +   E     +A     ++HGRM+  DKE+ M
Sbjct: 502 AATEEEPDDADGAPAGEVSDRRPPLAVLDVAEELRAGPLAGLRLEVLHGRMTPEDKEARM 561

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F  G   +L+ATTV+EVG+DV +A+++++ +A+ FG++QLHQLRGRV RG     C+L
Sbjct: 562 RAFAAGDVDVLVATTVVEVGVDVPNATVMVVLDADRFGVSQLHQLRGRVARGRHQGLCLL 621

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +     S  +  RL+ +  T DGF +A  DL+ R+EG++LG  QSG    +     L D 
Sbjct: 622 VSEASASSATGQRLAAVAGTSDGFELARLDLETRREGDVLGAAQSGRRSGIRMLSLLEDE 681

Query: 655 -LLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            L+  AR +A  +L  D  L    G ++ +
Sbjct: 682 QLIAEARTEATALLATDRGLADFPGLAMEV 711


>gi|325913467|ref|ZP_08175833.1| ATP-dependent DNA helicase RecG [Lactobacillus iners UPII 60-B]
 gi|325477236|gb|EGC80382.1| ATP-dependent DNA helicase RecG [Lactobacillus iners UPII 60-B]
          Length = 673

 Score =  327 bits (837), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 223/700 (31%), Positives = 365/700 (52%), Gaps = 45/700 (6%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  L ++            DLLFY P  +      P ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALLQL------KIKTIYDLLFYFPRRYDSLETFP-LNELK 58

Query: 66  EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I      S +     R  +K+ ++    +I ++ F+ +   LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175
            I + GK              Y+  +     + ++      E VYSL + +        I
Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFI 160

Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            +A+ + LP LPE I + L  K     +      +H P   KD +    A+    + E  
Sbjct: 161 NQAIEKYLPQLPEVIPQYLRDKYKLLDVQSMIIQMHQP---KDLQQVKVAQRTAIFLEFF 217

Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q+ L  L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   R
Sbjct: 218 VFQLQLSQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKR 277

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   
Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCA 337

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++T +     +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +
Sbjct: 338 LLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQ 397

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K     +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++ 
Sbjct: 398 LLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLT 457

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKES 532
            +   L +G + Y + P I E  + + ++    +  +  +F S  +A++HG+M    K  
Sbjct: 458 LMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSD 517

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +MD+F +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S C
Sbjct: 518 IMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYC 577

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           I +  P  + ++  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     +
Sbjct: 578 IFVSDPK-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINN 636

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            ++   A+K++K ++ Q+P+L    G+    L  L +Y++
Sbjct: 637 YNIFTTAQKESKILVHQNPELV---GEEYDFLKLLMEYDD 673


>gi|187918444|ref|YP_001884007.1| ATP-dependent DNA helicase RecG [Borrelia hermsii DAH]
 gi|119861292|gb|AAX17087.1| ATP-dependent DNA helicase RecG [Borrelia hermsii DAH]
          Length = 687

 Score =  327 bits (837), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 223/670 (33%), Positives = 338/670 (50%), Gaps = 60/670 (8%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH---YRPKI 61
           FL+     L    G+GKK       +    + + T   +L+ Y P  + DR      P  
Sbjct: 2   FLHEFKYDLQGISGLGKK------GLERLNSLHITNIRELIEYFPKKYEDRKNIKTFPDS 55

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFEG 120
            E+    ++T+   + +H  F    +R  K++      EI  +L F R    L+ VF  G
Sbjct: 56  LEVRNCELMTVFT-VLEHRDFGNNFKRNLKLIAQSENNEIFEILLFNRG--FLEGVFKVG 112

Query: 121 RKITVTGKIK-----------KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVD 169
           +K  +  K                + +   +P           F  I  VYSL  GL+  
Sbjct: 113 QKFYIYSKFNYNDYTQMWSCSNFDSEVFSCNPE---------RFKKIIPVYSLSEGLTSK 163

Query: 170 LFKKIIVEALSRL-----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPA 224
                + EAL          +PE+    L+ K S     EA N IH P     FE    A
Sbjct: 164 KISSYVKEALVYFLKFGQSDVPEF----LINKYSLLPFHEALNEIHFP---SSFEMLEKA 216

Query: 225 RERLAYDELLA------GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           ++ L Y E+        G+ ++  +RK    E  +P N    +  +I+  +PF  TK Q 
Sbjct: 217 KKTLIYREIFLLQFFSRGKSSVFFLRK----ERNLPRN----LLDQIILKLPFKLTKDQR 268

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI +I+ D+     M R+LQGDVGSGKT+VA ++    +EAG Q  +M P  +LA+QHY
Sbjct: 269 VAIDEIINDLESNKPMNRLLQGDVGSGKTIVAFLSSIPLIEAGYQVALMVPTDLLARQHY 328

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             +    ++  + +  +TG++ +  R + LE+I  G   ++IGTHA+F    ++ +L  +
Sbjct: 329 NNLANILKDFNVSIAFLTGSLKKRDRDEVLEKIQSGTYSLVIGTHAIFSQGTKFKRLAYI 388

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DEQH+FGV+QR +L  K     VLL++ATPIPR+L LT  GD++IS I   PAGR P+
Sbjct: 389 IIDEQHKFGVEQREELKNKGEEVDVLLISATPIPRSLALTLFGDLEISLIRRGPAGRIPV 448

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            T +      ++V E LK  L++G + Y++ P I   +  N +       +L   F   S
Sbjct: 449 TTYLAKHGNEEKVYEFLKNELAKGHQVYFVYPLISSSQRFNLKDATSMCLNLKNIFVEYS 508

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + +IH ++    KE +M  F      +L+AT+VIEVGID  +A+ +++E+AE FGL+ LH
Sbjct: 509 VEMIHSKLESHVKEEIMHDFYLKRIDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLH 568

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           Q+RGRVGRG   S   LLY  PL+++   RL  +K   DGF IAEEDLK R  G + G++
Sbjct: 569 QIRGRVGRGSLKSFLFLLYKEPLTESGKFRLKTIKENIDGFKIAEEDLKLRGPGNLFGLE 628

Query: 638 QSGMPKFLIA 647
           Q+G  K  IA
Sbjct: 629 QTGYLKLKIA 638


>gi|152965336|ref|YP_001361120.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
 gi|151359853|gb|ABS02856.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
          Length = 759

 Score =  326 bits (835), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 245/765 (32%), Positives = 378/765 (49%), Gaps = 86/765 (11%)

Query: 6   LNPLFAPLSTF--RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
           ++ L APLS+   RG G       +K ++ G   ET   DLL++ P  + DR     I +
Sbjct: 1   MDELDAPLSSRLPRGKGNSKKANPAKFLSEGLGLET-VRDLLWHLPRRYADRGTLTPIRD 59

Query: 64  ISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKTEML---KNVF 117
           + E    TI   + ++   Q  + +      + L DG   +T+ FF +        K   
Sbjct: 60  LVEGENATILAQVVKYGEPQRMRAKDGVRLVVTLGDGRDTLTMTFFAKFAGQFAHQKADL 119

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQD----VN--FPLIEAVYSLPTGLSVDL 170
             G  +  +GK+ K ++   + HP Y    + +D    VN   PL  A  + P  L    
Sbjct: 120 VPGALVLASGKVSKFQDVWQLSHPDYETLEDPEDGVDAVNRPIPLYPASKAAPNWL---- 175

Query: 171 FKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
            ++ + + L  L   LPE++  +++          A   +H PR   + E     R RL 
Sbjct: 176 VRQSVAQLLDGLEGQLPEFLPAEVVAGADLLDPLAALRAVHAPRDEAELEA---GRHRLR 232

Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDM 288
           Y+E    Q AL L R    ++  +        IA    + +PF  T SQ +  ++I  D+
Sbjct: 233 YEEAFVLQTALALRRASTARQRAVARTASPDGIAAAFDQRLPFPLTGSQRAVGEEIAADL 292

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK------ 342
           ++ + M R+LQGDVGSGKTLVAL AM   V+ GGQA ++AP  +LA QH   I       
Sbjct: 293 ARPHPMQRLLQGDVGSGKTLVALRAMLTVVDGGGQAALLAPTEVLAAQHLRSITAMLGDL 352

Query: 343 -------KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
                   + + T+++  ++TG+M    RR AL   A G+A I+IGTHAL Q+ +Q+  L
Sbjct: 353 AGAGTFGAHERATKVV--LLTGSMGAPARRAALLAAASGEAGIVIGTHALLQEHVQFADL 410

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
             V+VDEQHRFGV+QR  L  K    PH+L+MTATPIPRT+ +T  GD++ S +TE P G
Sbjct: 411 GFVVVDEQHRFGVEQRDALRAKGNGIPHLLVMTATPIPRTVAMTLFGDLETSVLTELPPG 470

Query: 455 RKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESN------------ 499
           R  ++TV++P +R   ID   +R+    + G+++Y +C +I+   E              
Sbjct: 471 RADVQTVVVPQDRPAWIDRTWQRIAEEAALGRQSYVVCARIDTDDEGGEDGTPPEDGPGE 530

Query: 500 -----------------------------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
                                           VVE   +          ++HGR+   +K
Sbjct: 531 EPAPDDALFEEPRPRGGKPGRPKPRPAAAVSQVVEVVRTHPATAGLRTEVLHGRLPPAEK 590

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + VM  F  G   +++ATTV+EVG+DV +AS++++ +A+ FG++QLHQLRGR+GRG    
Sbjct: 591 DDVMSRFAAGEVDVVVATTVVEVGVDVPNASVMVVVDADRFGISQLHQLRGRIGRGGLPG 650

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
           +C+LL        +  RL+ L  T DGF +A  DL+QR+EG++LG  QSG    L     
Sbjct: 651 TCLLLSGASEGSPAGQRLAALARTRDGFELARLDLEQRREGDVLGAAQSGERSSLQLLGV 710

Query: 651 LHDS-LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           L D+ L+  AR  A  ++  DPDL++ R  +  +   +    EAF
Sbjct: 711 LRDAELVAHARAAAVTLVAADPDLSAHRPLAAAVAARVSGDTEAF 755


>gi|260578990|ref|ZP_05846892.1| ATP-dependent DNA helicase [Corynebacterium jeikeium ATCC 43734]
 gi|258602855|gb|EEW16130.1| ATP-dependent DNA helicase [Corynebacterium jeikeium ATCC 43734]
          Length = 721

 Score =  325 bits (834), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 189/466 (40%), Positives = 277/466 (59%), Gaps = 16/466 (3%)

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           R P  P W   +  + +   S A+A   IH P +A       PAR RL ++E L  Q+ +
Sbjct: 212 RNPGAPAWPTDE--KGRPLISFADALRHIHQPSEAG----PEPARRRLKFNEALELQLVM 265

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L R    K  G+ +   G+  +K++  +PF  +  Q+ A++DI   +        +L G
Sbjct: 266 ALRRNDATKRTGMAL-APGENVEKLIAGLPFDLSAGQKMALEDIGSRLGGTTPANLLLHG 324

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           +VGSGKT+VALI+M  AV++G Q   +AP  ILA QH   + K  +NT + V ++ G+  
Sbjct: 325 EVGSGKTMVALISMLWAVDSGYQCAFVAPTEILAVQHARSLVKMLENTDVRVSVLVGSQK 384

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418
           QA +++ L  +  GQ  I++GTHA+ QDS+++Y+L +V+VDEQHRFGVQQR KL + A  
Sbjct: 385 QADKQRTLLDLVSGQTDIVVGTHAVIQDSVEFYRLGMVVVDEQHRFGVQQRNKLRESAPV 444

Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIER 474
              PH+++MTATPIPRT+ +T  GD+    +  KP GR  I+TV++P ++   +    ER
Sbjct: 445 DATPHMMVMTATPIPRTVGMTMFGDLTPITLVGKPGGRGDIETVVVPADKYRWVRRAWER 504

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           +   +  G +AY + P+IE    S      ER  +  E     +A++HG+M   DK+ VM
Sbjct: 505 MGEEIKAGGQAYVVAPRIE--GHSGVEQWCERI-ATEELPGCRVAMLHGKMDPADKDQVM 561

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G   +L+ATTVIEVG+DV +AS+++I  AE+FG +QLHQLRGR+GRG   S C+L
Sbjct: 562 QDFAAGKIDVLVATTVIEVGVDVPNASMMMILEAENFGFSQLHQLRGRIGRGRRDSLCLL 621

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
                    S+ RL V+  + DGF +AEEDLK R EG+ILG  QSG
Sbjct: 622 HTTAAPDSPSFHRLQVVAQSNDGFRLAEEDLKMRTEGDILGQDQSG 667


>gi|296140527|ref|YP_003647770.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
 gi|296028661|gb|ADG79431.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
           DSM 20162]
          Length = 778

 Score =  325 bits (834), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 217/649 (33%), Positives = 333/649 (51%), Gaps = 104/649 (16%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--------------------------- 152
           GR++ + G++ +   ++ + HP ++     D++                           
Sbjct: 114 GRQLLLIGRLGEFNRKLQLTHPDWLVLPDDDMSSTEALAANETGATKAGSKRLKLANLAL 173

Query: 153 -----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207
                 P+     ++PT L       I+   L+RL  +PE +              EA  
Sbjct: 174 LTGPVVPIYHGTKNMPTWL----IASIVDLVLTRLAPVPESLPDGFRSLHGLLGFDEALR 229

Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIAQKI 265
           + H P++  + +    AR RL++DE +A + AL   R      +  P    V+G +   +
Sbjct: 230 VAHFPKRRSEAD---AARRRLSFDEAVAIETALA-RRAHDVGTVPAPQLAAVDGPLQAGL 285

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF  T  QE  + +IL D+SQ + M R+LQG+VGSGKTLVAL+AM AAV++G QAV
Sbjct: 286 RERLPFQLTAGQEEVLAEILGDLSQGHPMTRLLQGEVGSGKTLVALLAMLAAVDSGYQAV 345

Query: 326 IMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++AP  +LA QH   I K              +    V ++TG+M    RR AL RI  G
Sbjct: 346 LLAPTEVLATQHMLSITKMLGDLGEAGQLGAADAATTVTLLTGSMNTKARRAALLRIVSG 405

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPI 431
           +A I+IGTHAL +D++ +++L LV+VDEQHRFGV+QR +L +K      PH+L+MTATPI
Sbjct: 406 EAGIVIGTHALLEDTVDFFRLGLVVVDEQHRFGVEQRDRLRRKGPDDMTPHLLVMTATPI 465

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWI 488
           PRT+ L   GD+  S + E P GR+PI+T ++P  R   ID    R+   +  G++ Y +
Sbjct: 466 PRTVALAQFGDMSTSVLRELPRGRQPIQTSVVPEGRPGWIDRAWARVDEEVRAGRQVYVV 525

Query: 489 CPQI-----------------------------------------EEKKESNFRSVVERF 507
           CP+I                                          E ++    S ++ +
Sbjct: 526 CPRIGDDPSGEQAKTSFTDEDYQFEQVAAPVRREKDRGDAGGEDAAESEQPKMTSAIDMY 585

Query: 508 NSL--HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           + L   E     IA++HGR+   +K SVM  F  G   +L+ATTVIEVG+DV +A+ +++
Sbjct: 586 DQLVGSELGQHRIALLHGRLPAEEKASVMAEFAAGEIDVLVATTVIEVGVDVANATTMVV 645

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            +AE FG++QLHQLRGRVGRG     C+L+   P S  +  RL  +  T DGF +A+ DL
Sbjct: 646 MDAERFGISQLHQLRGRVGRGGLPGLCLLVTDTP-SARTMERLESVAGTVDGFALAQLDL 704

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDL 673
           + R  G+ILG+ QSG+ + L      +D  +L+ AR  A  ++ +DP+L
Sbjct: 705 EHRGFGDILGVDQSGLARRLSFLDLANDGDVLDAARAFAFEVIDEDPEL 753


>gi|68536289|ref|YP_250994.1| ATP-dependent DNA helicase [Corynebacterium jeikeium K411]
 gi|68263888|emb|CAI37376.1| ATP-dependent DNA helicase [Corynebacterium jeikeium K411]
          Length = 721

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 189/466 (40%), Positives = 277/466 (59%), Gaps = 16/466 (3%)

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           R P  P W   +  + +   S A+A   IH P +A       PAR RL ++E L  Q+ +
Sbjct: 212 RNPGAPAWPTDE--KGRPLISFADALRHIHQPSEAG----PEPARRRLKFNEALELQLVM 265

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L R    K  G+ +   G+  +K++  +PF  +  Q+ A++DI   +        +L G
Sbjct: 266 ALRRNDATKRTGMAL-APGENVEKLIAGLPFDLSAGQKMALEDIGSRLGGTTPANLLLHG 324

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           +VGSGKT+VALI+M  AV++G Q   +AP  ILA QH   + K  +NT + V ++ G+  
Sbjct: 325 EVGSGKTMVALISMLWAVDSGYQCAFVAPTEILAVQHARSLVKMLENTNVRVSVLVGSQK 384

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418
           QA +++ L  +  GQ  I++GTHA+ QDS+++Y+L +V+VDEQHRFGVQQR KL + A  
Sbjct: 385 QADKQRTLLDLVSGQTDIVVGTHAVIQDSVEFYRLGMVVVDEQHRFGVQQRNKLRESAPV 444

Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIER 474
              PH+++MTATPIPRT+ +T  GD+    +  KP GR  I+TV++P ++   +    ER
Sbjct: 445 DATPHMMVMTATPIPRTVGMTMFGDLTPITLVGKPGGRGAIETVVVPADKHRWVRRAWER 504

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           +   +  G +AY + P+IE    S      ER  +  E     +A++HG+M   DK+ VM
Sbjct: 505 MGEEIKAGGQAYVVAPRIE--GHSGVEQWCERI-ATEELPGCRVAMLHGKMDPADKDQVM 561

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G   +L+ATTVIEVG+DV +AS+++I  AE+FG +QLHQLRGR+GRG   S C+L
Sbjct: 562 QDFAAGKIDVLVATTVIEVGVDVPNASMMMILEAENFGFSQLHQLRGRIGRGRRDSLCLL 621

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
                    S+ RL V+  + DGF +AEEDLK R EG+ILG  QSG
Sbjct: 622 HTTAAPDSPSFHRLQVVAQSNDGFRLAEEDLKMRTEGDILGQDQSG 667


>gi|315604396|ref|ZP_07879462.1| DNA helicase RecG [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314102|gb|EFU62153.1| DNA helicase RecG [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 715

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 220/680 (32%), Positives = 337/680 (49%), Gaps = 50/680 (7%)

Query: 33  CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI-SQH-------SSFQL 84
           C +A      +LL   P  +        +S + E   VTI   + S H       S  +L
Sbjct: 23  CESAGVHTVGELLSVPPRRYDHWGRLTPMSSLREGEDVTILAEVASAHLVANRSGSGVRL 82

Query: 85  QKRRPYKILLNDGTGEITLLFFYR---KTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
           + R      L DGT  ++  FF R   K   ++ +   GR     GK+   + ++ + HP
Sbjct: 83  EAR------LTDGTQFLSATFFARNHYKLAPIERLLTPGRSFLFAGKVGAYRGKLQLTHP 136

Query: 142 HYIFHNSQDV----NFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEWIEKDLLQ 195
            +   +  DV    + P+   +YS    L+     + I   L  +    +P+ +   +  
Sbjct: 137 SFEGVDGDDVERVASRPI--PIYSAMGSLASWAIARAIAMVLDHVEDSDVPDAVPSAVRA 194

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255
           +    + A+A   +H P    D+     AR  LA+ E    Q+ L+  R   +       
Sbjct: 195 RNGVLAHADALRRLHQPETDDDYRQ---ARRSLAFAEAFVLQVGLVAARAGVRAVPAPAS 251

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
                + + +   +PF  T SQ  A+  I  D++    M R+LQGDVGSGKT+VALIA+ 
Sbjct: 252 PASPALVESLTALLPFELTDSQREAVARIGVDLASTVPMQRLLQGDVGSGKTVVALIALL 311

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIA 372
             V AG Q V +AP  +LA+QH   ++            V ++TG+ P A RR+ +  +A
Sbjct: 312 QVVAAGHQGVFVAPTEVLAEQHAASLRSLLAPLGERAPDVRLLTGSTPPAARREIVAALA 371

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT---QKATAPHVLLMTAT 429
                I++GTHALFQD ++   L LV+VDEQHRFGV+QR  L+   +   A H L+MTAT
Sbjct: 372 SAHPLIVVGTHALFQDGVRVPGLGLVVVDEQHRFGVEQRAALSGAREDGRAVHELVMTAT 431

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAY 486
           PIPRT+ +T  G +D +++  KP  R P+ T +        +    +R    +++G++ Y
Sbjct: 432 PIPRTIAMTVFGGLDDTRMVGKPKDRSPVATYLADATNGAWVRRAWQRAAEEIAQGRRVY 491

Query: 487 WICPQI---------EEKKESNFRSVVERFNSLHEHFTSSIAIIH---GRMSDIDKESVM 534
            +CP+I         E++      SV E    L      +   IH   GR     K  +M
Sbjct: 492 VVCPRIDPSDEVADAEDEDAPPLASVAEVARYLRSQPALAGVAIHELTGRTPAGVKAQIM 551

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F  G   LL+ATTV+EVG+DV +A++++I +++ FGLAQLHQLRGRVGR    S CI 
Sbjct: 552 EDFSCGRAPLLVATTVVEVGVDVPEATLMVILDSQQFGLAQLHQLRGRVGRSSVPSLCIA 611

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD- 653
           ++   L++    RL     T DGF +AE DL+ RKEG+++G  QSG    L     L D 
Sbjct: 612 MHRHELTEAGRARLEAFAQTNDGFELAEADLRLRKEGDVVGAGQSGTATHLRYLSVLRDE 671

Query: 654 SLLEIARKDAKHILTQDPDL 673
           +L+  ARK+A+ +L +DP L
Sbjct: 672 ALIRAARKEAEALLNEDPTL 691


>gi|312194934|ref|YP_004014995.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
 gi|311226270|gb|ADP79125.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
          Length = 785

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 230/727 (31%), Positives = 360/727 (49%), Gaps = 103/727 (14%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL-LNDGTGEI 101
           DLL + P  +  R     + ++ E  + T+   + +H S Q +  R + +L + DGT ++
Sbjct: 69  DLLDHLPRRYHQRGELTNLRDLVEGEVSTVHAKVVKHESRQARTGRRFDVLTVTDGTAQM 128

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY------------------ 143
           T+ +F       +     G     +GK+ + + ++ MV+P                    
Sbjct: 129 TVTYFNPSRSPARR-LPAGSVAAFSGKVDRFRKQLQMVNPETNRLDEDDESDDPDRWARA 187

Query: 144 ---IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200
              I+  S+ V  P+I          SV +    + E       LP+ +  DLL +    
Sbjct: 188 LVPIYPASEHVASPVIS--------RSVRVLLDTVAE-------LPDPLPADLLARYRLV 232

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK--EIGIPINVE 258
            +  A+ + H P    D E    A  RL +DE L  Q+ L   R+       +  P   +
Sbjct: 233 DLRTAYELAHRPESRGDVER---AHRRLKWDEALTLQVILAQRRRAISAMATVARPARPD 289

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G +A      +PF+ T+ Q      I +++++   M R+LQG+VGSGKT+VA+ AM A V
Sbjct: 290 GILA-AFDGQLPFALTEGQREVGATIQEELAEPVPMHRLLQGEVGSGKTVVAVRAMLAVV 348

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------TQIIVEIITGNMPQAHRRKA 367
           +AGGQA ++AP   LA QHY  I+                    + ++TG++    +R A
Sbjct: 349 DAGGQAALLAPTETLATQHYRGIRALLGGFGRAGELDETPPATRIALVTGSVGARAKRAA 408

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLM 426
           L   A G A ++IGTHAL  + + ++ L LV+VDEQHRFGV+QR  L  +A   PHVL+M
Sbjct: 409 LAAAADGSAGLVIGTHALLHEGVAFHDLGLVVVDEQHRFGVEQRDALRARAAQPPHVLVM 468

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-----PINRIDEVIERLKVVLSE 481
           TATPIPRT+ +T  GD+++S +T+ PAGR+PI T ++     P  R D +  R++  ++ 
Sbjct: 469 TATPIPRTVAMTVFGDLEVSTLTQLPAGRQPISTFVVDAAAHPAWR-DRIWGRIRDEVAA 527

Query: 482 GKKAYWICPQI-----------------EEKKESNFRS--VVERFNSLHEHFTS------ 516
           G +AY +CP+I                 +E  ++  R+    ER  ++     S      
Sbjct: 528 GHQAYVVCPRISSVAVGRDEEDLAAAGDDEASDAPRRAGKATERPVTIPAEDGSLAGAGV 587

Query: 517 ---------------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
                           +A +HGR+    K+SVM  F  G   +L+ATTVIEVG+DV +A+
Sbjct: 588 EELLPWLADGPLAGLRLAALHGRLPADAKDSVMTRFAAGELDVLVATTVIEVGVDVPNAT 647

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
           +I I +A+ FG++QLHQLRGRVGRG+    C+L         +  RL+ +  T DG  +A
Sbjct: 648 VIAIMDADRFGVSQLHQLRGRVGRGQGAGVCLLHTEVDGDTPATQRLANVAATTDGAELA 707

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI-ARKDAKHILTQDPDLTSVRGQS 680
             DL QRKEG++LG  QSG  + +     L D  L + AR++A  ++  DP+L +  G  
Sbjct: 708 RLDLGQRKEGDVLGASQSGRARGVRLLELLKDERLILDAREEAARLVAADPELVAHPGLG 767

Query: 681 IRILLYL 687
            RI + L
Sbjct: 768 RRIAIAL 774


>gi|325107645|ref|YP_004268713.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
 gi|324967913|gb|ADY58691.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 701

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 215/648 (33%), Positives = 347/648 (53%), Gaps = 44/648 (6%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL   RGVG   +  LS      N       DLL+Y P   +D     K+SE+++++I T
Sbjct: 21  PLRYVRGVGPARAALLS------NLGLETVSDLLWYLPKDVLDLSELSKVSELTDDKIHT 74

Query: 72  ITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           + G +    +   L+ R     ++    G I  ++F +    +++       +    K K
Sbjct: 75  VRGQVLDVETKMLLRGRNLTAAVMRAEDGLIRGVWFNQP--WMRSKLNTEAYVLWAAKPK 132

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAV--YSLPTGLSVDLFKKIIVEALSRLP----- 183
               R  M +P   + ++ D +  + E +  Y L  GL ++  +++I   L  +P     
Sbjct: 133 FRDGRWEMSNPRLQWLDA-DADDAVGEVLPKYGLTEGLKLEGLRRMIAGVLELIPGHVED 191

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL- 242
           VLPE            P + E+   +H P   + ++    AR R+ ++E L  Q+ L L 
Sbjct: 192 VLPERFRV----HYKLPGLEESLKQLHRPDTLEQYQ---QARRRIVFEEQLTFQLGLALR 244

Query: 243 --MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R+  ++   IPI    K+  +I R  PF  T  QE AI +I  D++    M R+LQ 
Sbjct: 245 RRVRQTTERAPAIPITP--KVDARIRRLFPFELTNGQEQAIAEITADLALTQPMHRLLQA 302

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG+GKT+VA  AM AAV AG QA++MAP  +LA+QH + +    +++++   ++TG + 
Sbjct: 303 DVGAGKTVVAAYAMLAAVAAGYQAILMAPTELLARQHKQTLDAALKHSRVKRGLLTGTLT 362

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            A RR  L+ IA G+  +++GT AL Q  + +++L L ++DEQH+FGV QR   T    A
Sbjct: 363 AAERRGMLDDIASGKMQLVVGTQALIQKDVNFHQLGLAVIDEQHKFGVAQRSSFTGSTIA 422

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI-DEVIERLKVVL 479
           PHVL+MTATPIPR+L LT  GD+D+S + + P GR+ + T  +    + ++    ++  L
Sbjct: 423 PHVLVMTATPIPRSLCLTQYGDLDLSVMKDLPPGRQSVVTSRVTTPAVANKAWSFVQEKL 482

Query: 480 SEGKKAYWICPQIEEKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           + G++AY +CP ++  +       E  +R + +RF  L       + ++HG+M    ++ 
Sbjct: 483 TGGRQAYVVCPYVDSTEADAPAGAEQTYREMQQRFPDL------KVGLVHGQMDRRQQQL 536

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM  F+ G  ++L+AT+VIEVG+DV +AS+++I +A  FGL+QLHQLRGR+GRG     C
Sbjct: 537 VMADFREGEIQMLVATSVIEVGVDVPNASLMVILDAHQFGLSQLHQLRGRIGRGSFQGYC 596

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
            L      S+ +  RL  L+ T +GF IAE D   R  G +LG +Q G
Sbjct: 597 FLFSEAENSE-AQERLRALEETNNGFEIAEADFALRGPGNVLGTEQHG 643


>gi|34391529|gb|AAN61057.1| RecG [Borrelia hermsii]
          Length = 687

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 216/628 (34%), Positives = 328/628 (52%), Gaps = 38/628 (6%)

Query: 39  TRFIDLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN 95
           T   +L+ Y P  + DR      P   E+    ++T+   + +H  F    +R  K++  
Sbjct: 30  TNIRELIEYFPKKYEDRKNIKTFPDSLEVRNCELMTVFT-VLEHRDFGNNFKRNLKLIAQ 88

Query: 96  DGTGEI-TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---IFHNSQDV 151
               EI  +L F R    L+ VF  G+K  +  K        +    ++   +F  + + 
Sbjct: 89  SENNEIFEILLFNRG--FLEGVFKVGQKFYIYSKFNYNDYTQMWSCSNFDSEVFSCNPE- 145

Query: 152 NFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-----PVLPEWIEKDLLQKKSFPSIAEAF 206
            F  I  VYSL  GL+       + EAL          +PE+    L+ K S     EA 
Sbjct: 146 RFKKIIPVYSLSEGLTSKKISSYVKEALVYFLKFGQSDVPEF----LINKYSLLPFHEAL 201

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLA------GQIALLLMRKQFKKEIGIPINVEGK 260
           N IH P     FE    A++ L Y E+        G+ ++  +RK    E  +P N    
Sbjct: 202 NEIHFP---SSFEMLEKAKKTLIYREIFLLQFFSRGKSSVFFLRK----ERNLPRN---- 250

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +  +I+  +PF  TK Q  AI +I+ D      M R+LQGDVGSGKT+VA ++    +EA
Sbjct: 251 LLDQIILKLPFKLTKDQRVAIDEIINDPESNKPMNRLLQGDVGSGKTIVAFLSSIPLIEA 310

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q  +M P  +LA+QHY  +    ++  + +  +TG++ +  R + LE+I  G   ++I
Sbjct: 311 GYQVALMVPTDLLARQHYNNLANILKDFNVSIAFLTGSLKKRDRDEVLEKIQSGTYSLVI 370

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTHA+F    ++ +L  +I+DEQH+FGV+QR +L  K     VLL++ATPIPR+L LT  
Sbjct: 371 GTHAIFSQGTKFKRLAYIIIDEQHKFGVEQREELKNKGEEVDVLLISATPIPRSLALTLF 430

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           GD++IS I   PAGR P+ T +      ++V E LK  L++G + Y++ P I   +  N 
Sbjct: 431 GDLEISLIRRGPAGRIPVTTYLAKHGNEEKVYEFLKNELAKGHQVYFVYPLISSSQRFNL 490

Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           +       +L   F   S+ +IH ++    KE +M  F      +L+AT+VIEVGID  +
Sbjct: 491 KDATSMCLNLKNIFVEYSVEMIHSKLESHVKEEIMHDFYLKRIDILVATSVIEVGIDCPN 550

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A+ +++E+AE FGL+ LHQ+RGRVGRG   S   LLY  PL+++   RL  +K   DGF 
Sbjct: 551 ATCMVVEHAERFGLSTLHQIRGRVGRGSLKSFLFLLYKEPLTESGKFRLKTIKENIDGFK 610

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           IAEEDLK R  G + G++Q+G  K  IA
Sbjct: 611 IAEEDLKLRGPGNLFGLEQTGYLKLKIA 638


>gi|302811380|ref|XP_002987379.1| hypothetical protein SELMODRAFT_446963 [Selaginella moellendorffii]
 gi|300144785|gb|EFJ11466.1| hypothetical protein SELMODRAFT_446963 [Selaginella moellendorffii]
          Length = 975

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 212/618 (34%), Positives = 333/618 (53%), Gaps = 57/618 (9%)

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI---- 156
            T  +F  KT    + + EG K  V+GK+K +  +   +   Y     +  +F  +    
Sbjct: 354 FTSSWFLNKT---ASGYPEGSKAAVSGKVKAMNRKSHFLLKEYAVKVIEGEDFDQLRNDG 410

Query: 157 EA--VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           EA  VYS    L+    +  I   L  LP   + +  ++  K    SI +A++ +H P  
Sbjct: 411 EAYPVYSSKGLLNPKKIQAFIQRLLKGLPTDIDPLPTEMRDKYDLLSIEQAYSTLHQP-- 468

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE------GKIAQKILRN 268
             + +  + AR R+ +D+    Q+A LL R   +   G  +N E        ++ K+L  
Sbjct: 469 -TNLQGANVARRRIVFDDYFYLQLAFLLQRNCLR---GSTVNNELEMDKWSSLSLKVLNA 524

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF  T  Q  A  +I+ D+ Q+  M R+LQGDVG GKT+VA +A+   V +G QA +MA
Sbjct: 525 LPFKLTAGQIKAASEIMWDLRQQAPMSRLLQGDVGCGKTIVAFLALLDVVSSGYQAALMA 584

Query: 329 PIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           P   +  QHY+    +++   +  +  + +++G++     R   E IA+ +  +I+GTHA
Sbjct: 585 PTDFVVSQHYKQFLSWLEVLDEKDRPKIALLSGSLSAGEARLVREGIANREISLILGTHA 644

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKL--------------------TQKATAPHVL 424
           L  +S  +  L L ++DEQHRFGV QR +L                     + A+  HVL
Sbjct: 645 LISNSTNFPALGLAVIDEQHRFGVGQRDRLKTAHASEAVEPDLDDADLERARLASTTHVL 704

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEG 482
           LM+ATPIPR+L LT  GD+ +S+I E P GR+P+ T ++P +        E ++  L  G
Sbjct: 705 LMSATPIPRSLALTCHGDMSLSQINEIPPGRQPVDTYVLPDDEGGRRRAYELVRAELENG 764

Query: 483 KKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            +A+++ P I E   S+F   R+ V  F+ + + F     A+ HGRM    +   +  F+
Sbjct: 765 GRAFFVYPLINES--SSFEHQRAAVTEFDKVVKEFKDYKCALAHGRMKPDLRNQELKRFR 822

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G C++L+AT V+EVGIDV +A++++IE+AE +GLAQLHQLRGRVGRG   S CILL   
Sbjct: 823 EGECQILVATKVVEVGIDVPEATVMLIESAEGYGLAQLHQLRGRVGRGTRKSFCILL--- 879

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLE 657
                +  RL +L++T DGF +AEEDLK R  G++LG +QSG   +F++A+    + +L 
Sbjct: 880 TCCDTAVERLKLLESTTDGFRLAEEDLKMRGPGDLLGKRQSGTHLEFVLARLGEDNDILL 939

Query: 658 IARKDAKHILTQDPDLTS 675
            AR  A+ +L  D +L S
Sbjct: 940 QARAAAEELLETDKNLES 957


>gi|329947047|ref|ZP_08294459.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328526858|gb|EGF53871.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 752

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 227/707 (32%), Positives = 351/707 (49%), Gaps = 90/707 (12%)

Query: 70  VTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNV--FFEGRKIT 124
            TI   I++ SS + +  R   ++   + DG   + ++ F    +M         G  + 
Sbjct: 50  ATIQAQIARASSRRTRSGRAPALMEATVTDGVSTMDVVQFGAAGQMRARATRLAPGTTVL 109

Query: 125 VTGKIKKLKNRIIMVHPH-YIFHNSQDVN--------FPLIEAVYSLPTGLSVDLFKKII 175
           ++GK+   + R  + +P  Y+     +           P+     +LP+  SV    + +
Sbjct: 110 MSGKVGLHRGRKQLTNPRLYVLDELDEAEREALLARPIPIYPGTEALPS-WSVAKAVRTV 168

Query: 176 VEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           ++ L    V   LPE    DL +         A+  +H P  A   +W + AR RL ++E
Sbjct: 169 LDQLGPGDVADPLPE----DLRRSAGLIDAYTAYRWVHRPDDA--HQWKA-ARSRLRHEE 221

Query: 233 LLAGQIALLLMR---KQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
            L  Q+AL   R   +  +  +  P   V   +   +  ++P++ T  Q    ++I  D+
Sbjct: 222 ALILQVALAQRRAHHEATRTAVAWPEPQVVDSLRADLDASLPYNLTAGQVRVGEEIAADL 281

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY---- 344
           ++   M R+LQGDVGSGKTLV+L AM   V+ GGQA ++AP  +LA QH+  ++      
Sbjct: 282 ARTVPMQRLLQGDVGSGKTLVSLRAMLQVVDGGGQAALLAPTEVLAAQHHSSLEALLGPL 341

Query: 345 -------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
                         V ++TG+ P A RR+ L  +A G+  I++GTHAL  D++Q   L L
Sbjct: 342 ALSGMLGEAERATRVHLLTGSTPAAQRRRILADLAAGEPAIVVGTHALLSDTVQIPFLGL 401

Query: 398 VIVDEQHRFGVQQRLKL------TQKATA----PHVLLMTATPIPRTLVLTSLGDIDISK 447
           V+VDEQHRFGV QR  L      T  AT     PH+L+MTATPIPRT+ +T  GD+  S 
Sbjct: 402 VVVDEQHRFGVAQRDALRERGGVTDSATGQRHTPHLLVMTATPIPRTIAMTVFGDLATSV 461

Query: 448 ITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIE----------- 493
           + E PAGR P+ T ++P +R   ++ +  R     + G + Y +CP+IE           
Sbjct: 462 LDELPAGRSPVPTHLVPWSRTSWVEGIWRRAAKETASGGRVYVVCPRIEVGDDEPQQEAA 521

Query: 494 ----------------EKKESNFR-----SVVERFNSLHEHFTS----SIAIIHGRMSDI 528
                           E +ES  R     + VE +    E   +     +  + GRMS  
Sbjct: 522 MASGADTAAEQTPGPLELEESCSRPDRPLAAVEEWRQRLEAEPALEGVGVGSLTGRMSSE 581

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           DK S M  F +G   +L+ATTVIEVG+DV +A++++I +A+ FGL+QLHQLRGRVGRG  
Sbjct: 582 DKASAMADFASGATPVLVATTVIEVGVDVPEATMMVILDADRFGLSQLHQLRGRVGRGSR 641

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            S C+ +    +   ++ RL    +T DGF +AE DL  R EG++LG  QSG    L   
Sbjct: 642 ESVCVAVTGVEVGSTAFHRLKAFASTTDGFALAEADLDLRSEGDVLGASQSGRTSGLDLL 701

Query: 649 PELHDS-LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
               D+ L+  AR++A+ I+  DP L   R  +  I+  L + ++AF
Sbjct: 702 RVTRDARLIATARREAERIVADDPQLREHRALAAAIVERLDEESQAF 748


>gi|229818293|ref|ZP_04448574.1| hypothetical protein BIFANG_03593 [Bifidobacterium angulatum DSM
           20098]
 gi|229784163|gb|EEP20277.1| hypothetical protein BIFANG_03593 [Bifidobacterium angulatum DSM
           20098]
          Length = 836

 Score =  324 bits (830), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 215/581 (37%), Positives = 306/581 (52%), Gaps = 72/581 (12%)

Query: 171 FKKIIVEALSRLPVLPEWI--EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
           F   + EA+    +LPE +  E+ L+ +      AEAF  IH+P   + F         L
Sbjct: 267 FTGTLAEAIP--DILPEQVRTERGLMHR------AEAFRAIHDPASVQAFHQ---GIATL 315

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEG----KIAQKILRNIPFSPTKSQESAIKDI 284
            Y+E    Q ALL  R+        P   +G    ++ ++ + ++PF  T  Q+  I DI
Sbjct: 316 RYEEAFICQTALLQARQANGGASAHPCAGDGATGERLVERFVASLPFQLTDGQQQVIADI 375

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
             DM+Q + M R+LQG+VGSGKT+VAL AM  AVEAG QAV++AP  +LA+QH E I+  
Sbjct: 376 RNDMAQNHPMQRLLQGEVGSGKTVVALAAMLQAVEAGYQAVLVAPTLVLAEQHAENIRTM 435

Query: 345 TQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            +   +  I V +ITG M  A RRKA    A G+  II+ THA F  + Q   L LV++D
Sbjct: 436 VEGLHSPSIPVTLITGGMKLAARRKAHAIAASGEPGIIVATHAAFSTAFQASNLALVVID 495

Query: 402 EQHRFGVQQRLKLTQK---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           EQHRFGV+QR  L  K    + PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI
Sbjct: 496 EQHRFGVEQRESLQSKPIDGSTPHMLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPI 555

Query: 459 KTVIIPINRID-----EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           +T +  IN  D      +   ++  +  G++AY +C +I++  E       +R N   + 
Sbjct: 556 RTFV--INEEDGRTMANMFSHIRARIDAGERAYIVCARIDDPSEGADAGAADRDNGRGDD 613

Query: 514 FTSSI--------------------------------------AIIHGRMSDIDKESVMD 535
              ++                                      A + GR  D  K  VM 
Sbjct: 614 ANGAVLDPYATDDDMAQQRPPLHTVMQIKERLQKLPQFQGIAFATLTGRDKDDVKTQVMA 673

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +G   +L++TTVIEVG+DV  AS ++I +A+ +GL+QLHQLRGRVGRG   S   L+
Sbjct: 674 DFASGVTPVLVSTTVIEVGVDVPQASCMVIFDADRYGLSQLHQLRGRVGRGGTDSWAFLI 733

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS- 654
                   + +RL V+ ++ DG  IA+ DL+ R  G++LG  QSGM   L     + D+ 
Sbjct: 734 SRAEPGSIAESRLEVIHDSLDGAQIAQADLEFRGAGDVLGDTQSGMRSSLKLLRVVKDAD 793

Query: 655 LLEIARKDAKHILTQDPDL-TSVRGQSIRILLYLYQYNEAF 694
           L+  AR  A+ +L  DP+L  SV  Q    +L   + NEAF
Sbjct: 794 LIVDARSRAERMLADDPELKGSV--QLAGAVLDFTRGNEAF 832


>gi|28493533|ref|NP_787694.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist]
 gi|28476575|gb|AAO44663.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist]
          Length = 768

 Score =  323 bits (829), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 232/703 (33%), Positives = 372/703 (52%), Gaps = 68/703 (9%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
            GKK +  L+K         +R IDLL Y+P  +I R    K+SE+     VTI G +  
Sbjct: 92  TGKKMASLLAKEFGI-----SRVIDLLTYYPRRYICRGKLTKLSELIPGDEVTIVGRV-- 144

Query: 79  HSSFQLQKRRPYK------ILLNDGTGEITLLFFYR--KTEMLKNVFFEGRKITVTGKIK 130
                 ++R+ +       + L+DG   I L+FF++  + E LK     G     +GK+ 
Sbjct: 145 ---LSTEQRKTFSGANFLSVTLSDGENIIQLVFFHQPWRAENLK----PGACGLFSGKVT 197

Query: 131 KLKNRIIMVHPHYIFHNSQDVN----------FPLIEAVYSLPT---GLSVDLFKKIIVE 177
           +  N+  + HP Y   +S+              P+  A  + P+     +VDL     +E
Sbjct: 198 EFNNKKQLSHPEYELFSSEPTREQIQKWNEQIIPIYRACIACPSWKIARAVDL----ALE 253

Query: 178 ALSRLPVLPEWIEKDLLQKK-SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           A+    V       D +     + S+ +AF +IH+P   ++ E    A+E L + E    
Sbjct: 254 AVKGQTV-------DFMSGNYGYMSVEKAFYVIHHPTDNEELE---AAKESLRFFEAFLL 303

Query: 237 QIALLLMRKQFKKEIGIP--INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           Q ALL  RK+F+        I   G   ++    + FS T  Q  A  +I +D+S    M
Sbjct: 304 QSALL-HRKRFRNRASATPFIRKNGGFLERFDARLEFSQTNDQLRAADEIFEDLSLSEPM 362

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+L G+VGSGKTLVA+ AM  A +   QAV++AP  +LA+QH+  + +   + ++  EI
Sbjct: 363 TRLLHGEVGSGKTLVAIRAMLLAADNDMQAVLVAPTEVLAKQHHRNLTRMLGH-ELCAEI 421

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
               +    R K   RIA G++ IIIGTH++F     ++ L LV++DEQHRFGV QR +L
Sbjct: 422 QPSLL--LGREKHTLRIASGRSKIIIGTHSVFSKKTVFHNLALVVIDEQHRFGVGQRDEL 479

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----E 470
             K  +PH+L+++ATPIPRT+ L+ L  I IS+I   P+G+  I T ++P+        E
Sbjct: 480 LLKGDSPHLLMLSATPIPRTVALSLLNFIAISEIKTPPSGKAEISTHVVPLAEKPQWGRE 539

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH---FTSSIAIIHGRMSD 527
           VI R+   + +G + + + P IE+ + +   S+      L E      + I+ +HG+++ 
Sbjct: 540 VIRRISEEIQKGHQVFVVAPVIEQSR-TGAASISALLRELEETPLLQGAKISRLHGKLTA 598

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            + E  M+ F  G   +L++TT+IEVGIDV +A+ ++I +A+ FG+AQLHQLRGR+GRG 
Sbjct: 599 AECEKSMEEFSCGASDILLSTTMIEVGIDVPNATAMVIVSADRFGIAQLHQLRGRIGRGN 658

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
               C+L+ + P    + +RL ++  T DGF +AE D+K R+EG++LG+ QSG   + + 
Sbjct: 659 LPGVCLLVTNAPEGSAARSRLDLVARTHDGFSLAEIDMKMRREGDLLGLGQSGQGNYRLL 718

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
           + +    +L  AR  A+ I+  D  L   + + +R  L+L QY
Sbjct: 719 RLDEDLQVLSDARLHAEGIMENDIKLE--KNKLLR--LFLSQY 757


>gi|28572355|ref|NP_789135.1| ATP-dependent DNA helicase RecG [Tropheryma whipplei TW08/27]
 gi|28410486|emb|CAD66872.1| ATP-dependent DNA helicase RecG [Tropheryma whipplei TW08/27]
          Length = 673

 Score =  323 bits (827), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 227/683 (33%), Positives = 365/683 (53%), Gaps = 63/683 (9%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYK------I 92
           +R IDLL Y+P  +I R    K+SE+     VTI G +        ++R+ +       +
Sbjct: 12  SRVIDLLTYYPRRYICRGKLTKLSELIPGDEVTIVGRV-----LSTEQRKTFSGANFLSV 66

Query: 93  LLNDGTGEITLLFFYR--KTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150
            L+DG   I L+FF++  + E LK     G     +GK+ +  N+  + HP Y   +S+ 
Sbjct: 67  TLSDGENIIQLVFFHQPWRAENLK----PGACGLFSGKVTEFNNKKQLSHPEYELFSSEP 122

Query: 151 VN----------FPLIEAVYSLPT---GLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197
                        P+  A  + P+     +VDL     +EA+    V       D +   
Sbjct: 123 TREQIQKWNEQIIPIYRACIACPSWKIARAVDL----ALEAVKGQTV-------DFMSGN 171

Query: 198 -SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-- 254
             + S+ +AF +IH+P   ++ E    A+E L + E    Q ALL  RK+F+        
Sbjct: 172 YGYMSVEKAFYVIHHPTDNEELE---AAKESLRFFEAFLLQSALL-HRKRFRNRASATPF 227

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           I   G   ++    + FS T  Q  A  +I +D+S    M R+L G+VGSGKTLVA+ AM
Sbjct: 228 IRKNGGFLERFDARLEFSQTNDQLRAADEIFEDLSLSEPMTRLLHGEVGSGKTLVAIRAM 287

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A +   QAV++AP  +LA+QH+  + +   + ++  EI    +    R K   RIA G
Sbjct: 288 LLAADNDMQAVLVAPTEVLAKQHHRNLTRMLGH-ELCAEIQPSLL--LGREKHTLRIASG 344

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           ++ IIIGTH++F     ++ L LV++DEQHRFGV QR +L  K  +PH+L+++ATPIPRT
Sbjct: 345 RSKIIIGTHSVFSKKTVFHNLALVVIDEQHRFGVGQRDELLLKGDSPHLLMLSATPIPRT 404

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI----DEVIERLKVVLSEGKKAYWICP 490
           + L+ L  I IS+I   P+G+  I T ++P+        EVI R+   + +G + + + P
Sbjct: 405 VALSLLNFIAISEIKTPPSGKAEISTHVVPLAEKPQWGREVIRRISEEIQKGHQVFVVAP 464

Query: 491 QIEEKKESNFRSVVERFNSLHEH---FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            IE+ + +   S+      L E      + I+ +HG+++  + E  M+ F  G   +L++
Sbjct: 465 VIEQSR-TGAASISALLRELEETPLLQGAKISRLHGKLTAAECEKSMEEFSCGASDILLS 523

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TT+IEVGIDV +A+ ++I +A+ FG+AQLHQLRGR+GRG     C+L+ + P    + +R
Sbjct: 524 TTMIEVGIDVPNATAMVIVSADRFGIAQLHQLRGRIGRGNLPGVCLLVTNAPEGSAARSR 583

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L ++  T DGF +AE D+K R+EG++LG+ QSG   + + + +    +L  AR  A+ I+
Sbjct: 584 LDLVARTHDGFSLAEIDMKMRREGDLLGLGQSGQGNYRLLRLDEDLQVLSDARLHAEGIM 643

Query: 668 TQDPDLTSVRGQSIRILLYLYQY 690
             D  L   + + +R  L+L QY
Sbjct: 644 ENDIKLE--KNKLLR--LFLSQY 662


>gi|228966803|ref|ZP_04127847.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228792902|gb|EEM40460.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 405

 Score =  323 bits (827), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 164/373 (43%), Positives = 251/373 (67%), Gaps = 5/373 (1%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA I + A+  A  Q  +M P  ILA+QHY+ + +   +  + VE
Sbjct: 1   MNRLLQGDVGSGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVE 60

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++T ++  A RR  L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  
Sbjct: 61  LLTSSVKGARRRDILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRV 120

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L +K  +P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+ 
Sbjct: 121 LREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLG 180

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKE 531
            ++  + +G++AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE
Sbjct: 181 FVEKEIKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKE 240

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            +M  F     ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S 
Sbjct: 241 EIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSY 300

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C+L+  P  S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A   +
Sbjct: 301 CLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADM-V 358

Query: 652 HD-SLLEIARKDA 663
           HD   LE AR+DA
Sbjct: 359 HDYRALETARQDA 371


>gi|186498546|ref|NP_178253.3| ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/
           helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|330250357|gb|AEC05451.1| ATP-dependent DNA helicase RecG [Arabidopsis thaliana]
          Length = 973

 Score =  322 bits (826), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 212/635 (33%), Positives = 329/635 (51%), Gaps = 77/635 (12%)

Query: 106 FYRKTEMLKNVFFE--------GRKITVTGKIKKLK----------NRIIMVHPHYIFHN 147
           F+R T      F          G  + ++GK+K L+          N  ++       H 
Sbjct: 328 FFRGTRFTWQPFLNSIQEKHKVGDLVCISGKVKSLRAEDHFEMREYNIDVLKDEEESSHR 387

Query: 148 SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207
           +Q   +P    +Y    GL+      +I  AL  LP   + I K++ +    PS+ +A+ 
Sbjct: 388 AQGRPYP----IYPSKGGLNPKFLSDVISRALRVLPANMDPIPKEITKVFGLPSLNDAYV 443

Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALL--------------LMRKQFKKEIGI 253
            IH P   K  +    AR+RL +DE    Q+A L              ++ ++F+K +  
Sbjct: 444 GIHEP---KTLDEADLARKRLIFDEFFYLQLARLYQMLQSLGTKIEKDVLLEKFRKPVLN 500

Query: 254 PINVE--GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            + +E    + +  L+ +P+S T SQ SA+ +I+ D+ +   M R+LQGDVG GKT+VA 
Sbjct: 501 SVYIEEWSTLTKSFLKALPYSLTPSQLSAVSEIIWDLKRPVPMNRLLQGDVGCGKTVVAF 560

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-----VEIITGNMPQAHRRK 366
           +A    + +G QA  MAP  +LA QHYE  +   +N + +     + ++TG+ P    R 
Sbjct: 561 LACMEVIGSGYQAAFMAPTELLAIQHYEQCRDLLENMEGVSSKPTIGLLTGSTPAKQSRM 620

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--------- 417
             + +  G    IIGTH+L  + I+Y  L + +VDEQ RFGV QR K   K         
Sbjct: 621 IRQDLQSGAISFIIGTHSLIAEKIEYSALRIAVVDEQQRFGVIQRGKFNSKLYGTSMISK 680

Query: 418 --------------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                         + APHVL M+ATPIPR+L L   GDI +++IT  P GR P++T I 
Sbjct: 681 SGSSDSDDTSKADLSMAPHVLAMSATPIPRSLALALYGDISLTQITGMPLGRIPVETHIF 740

Query: 464 PINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIA 519
             N   I EV   +   L  G + Y + P I++ ++    R+       + + F   +  
Sbjct: 741 EGNETGIKEVYSMMLEDLKSGGRVYVVYPVIDQSEQLPQLRAASAELEIVTKKFPKYNCG 800

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           ++HGRM   DKE  ++ F++G  ++L++T VIE+G+DV DAS++++ NAE FG+AQLHQL
Sbjct: 801 LLHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQL 860

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           RGRVGRG   S C+L+     S NS  RL++L  + DGF +A  DL  R  G++LG KQS
Sbjct: 861 RGRVGRGTRKSKCLLVGS---STNSLKRLNMLGKSSDGFYLANIDLLLRGPGDLLGKKQS 917

Query: 640 G-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           G +P+F +A+ E+  ++L+ A   A ++L    DL
Sbjct: 918 GHLPEFPVARLEIDGNMLQEAHIAALNVLGDSHDL 952


>gi|326773647|ref|ZP_08232930.1| ATP-dependent DNA helicase RecG [Actinomyces viscosus C505]
 gi|326636877|gb|EGE37780.1| ATP-dependent DNA helicase RecG [Actinomyces viscosus C505]
          Length = 752

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 234/757 (30%), Positives = 367/757 (48%), Gaps = 94/757 (12%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           VGK+ +  L+K        ET   DLL   P  +        +  + E    TI   + +
Sbjct: 5   VGKRTAAQLAK-----QGVET-GADLLRLLPRRYDTWGELTDMRTLVEGEQATIQAQVVR 58

Query: 79  HSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNV--FFEGRKITVTGKIKKLK 133
            SS + +  R   ++   + DG   + L+ F    +M         G  + ++GK+   +
Sbjct: 59  ASSRRTRSGRVPALMEATVTDGASTMDLVQFGAAGQMRARAAQLAPGTTVLLSGKVGFHR 118

Query: 134 NRIIMVHPHYIFHNSQDVN---------FPLIEAVYSLPTGLSVDLFKKII--VEALSRL 182
            R  + +P     +  D +          P+     +LP+ L     + ++  +E     
Sbjct: 119 GRKQLSNPRLYVLDELDEDERAALLARPMPIYPGTEALPSWLVAKAVRSVLDQLEPGDVA 178

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             LPE    +L ++        A+  +H P  +   +W + AR+RL ++E L  Q+AL  
Sbjct: 179 DPLPE----ELRREAELVDAYTAYRWVHRPEDSG--QWKA-ARKRLRHEEALILQVALAQ 231

Query: 243 MRKQFKK---EIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
            R   +     +  P+   EG +   +   +P+  T  Q+   ++I  D+++   M R+L
Sbjct: 232 RRAHHEATCTAVAWPVPEEEGSLRADLDARLPYDLTAGQKRVGEEISADLARTVPMQRLL 291

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQN 347
           QGDVGSGKTLVAL AM   V  GGQ  ++AP  +LA QH+  ++                
Sbjct: 292 QGDVGSGKTLVALRAMLQVVGGGGQTALLAPTEVLAAQHHSSLEAVLGPMARLGMLGGAE 351

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
               V ++TG+ P A RR+ L  +A G+  I++GTHAL  D++Q   L LV+VDEQHRFG
Sbjct: 352 RATRVHLLTGSTPAAQRRRILTDLAAGEPAIVVGTHALLSDTVQIPFLGLVVVDEQHRFG 411

Query: 408 VQQ------RLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           V Q      R  LT  AT     PH+L+MTATPIPRT+ +T  GD+  S + E PAGR  
Sbjct: 412 VAQRDALRERGGLTDPATGQTHTPHLLVMTATPIPRTIAMTVFGDLATSVLDELPAGRSV 471

Query: 458 IKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVE---- 505
           + T ++P +R   ++ +  R    ++ G + Y +CP+IE   E      +  + VE    
Sbjct: 472 VPTHLVPWSRTSWVEGIWRRAAKEVASGGRVYVVCPRIEVDDEPRHTPMDGAAAVETDDG 531

Query: 506 -RFNSLHEHFTSS--------------------------IAIIHGRMSDIDKESVMDSFK 538
            +  +L E    S                          + ++ GRMS  DK + M  F 
Sbjct: 532 PKQEALAEEGDGSHPDRPLAAVEDWRRRLAGEPALGGIGVGVLTGRMSGEDKAAAMADFA 591

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L++TTVIEVG+DV +AS+++I +AE FGL+QLHQLRGRVGRG   S C+ +   
Sbjct: 592 SGNTPVLVSTTVIEVGVDVPEASMMVILDAERFGLSQLHQLRGRVGRGSRPSLCVAVTGA 651

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLE 657
            +   ++ RL    +T DGF +AE DL+ R EG++LG  QSG    L       D+ L+ 
Sbjct: 652 EVGSIAFHRLKAFASTTDGFALAEADLELRSEGDVLGASQSGRTSGLDLLRVTRDARLIA 711

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
            AR+ A+ I+  DP L+  R  +  I+  L + ++AF
Sbjct: 712 TARRQAERIVAADPQLSDHRALAAAIVERLDEESQAF 748


>gi|312140466|ref|YP_004007802.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|325675917|ref|ZP_08155600.1| DNA helicase RecG [Rhodococcus equi ATCC 33707]
 gi|311889805|emb|CBH49122.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
 gi|325553155|gb|EGD22834.1| DNA helicase RecG [Rhodococcus equi ATCC 33707]
          Length = 751

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 213/704 (30%), Positives = 366/704 (51%), Gaps = 79/704 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGE 100
           DLL ++P  +  +       E  E   VTI   + +     ++ RR    K++L   +  
Sbjct: 31  DLLRHYPHRYAAQGRELTEKEPEEGSHVTIIARVVKADVVNMKSRRGQMLKVVLAAESQS 90

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF----HNSQD--VNFP 154
           + + FF      +K+    G +   +G +K  +N+  + HP Y+        +D  V+  
Sbjct: 91  VDVTFF--NPHKVKHAVRVGVRAMFSGTVKYFRNKWSLTHPSYLILPEPAEGEDPVVSMA 148

Query: 155 LIEAVYSLP----------TGLSVDLFKKIIV-------------------EALSRLPVL 185
            ++   SL           +G+ + +F + ++                   + L +L  +
Sbjct: 149 HVQGAGSLAGMARATQDSGSGVDMSIFDRELIPLYPATREVESWTILRCVRQVLDQLDTV 208

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            + +   +  +     + EA  ++H P    D      A+ERL +DE  A Q+ L   R+
Sbjct: 209 EDPLPDAVRGEHGLIGLDEALRLVHLPETRDDI---GRAQERLRFDEAAALQLVLAQRRR 265

Query: 246 QFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
                +    P   +G +A      +PF  T+ Q+   ++I  D+++++ M R+LQG+VG
Sbjct: 266 DIAARVAPQCPPKPDG-LAAAFDEMLPFELTEGQKEVAEEISADLARRHPMNRLLQGEVG 324

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIV 352
           SGKT+VAL AM  AV+AG Q  ++AP  +LA QH   +++              +    V
Sbjct: 325 SGKTIVALRAMLQAVDAGYQCALLAPTEVLAAQHARSLREMLGPLGAAGELGAADVATKV 384

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+M    RR AL  I  G + I+IGTHAL QD+++++ L  V+VDEQHRFGV+QR 
Sbjct: 385 TLLTGSMSTKARRAALLDIVTGDSGIVIGTHALIQDNVEFFDLGFVVVDEQHRFGVEQRD 444

Query: 413 KLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           +L ++A    +PH+L+MTATPIPRT+ +T LGD++ S + + P GR PI + ++   +  
Sbjct: 445 ELRKRAKEGLSPHLLVMTATPIPRTIAMTVLGDLETSTLRQLPQGRAPIVSKVVAARQTP 504

Query: 470 EVI----ERLKVVLSEGKKAYWICPQIEE-----------KKESNFRSVVERFNSLHE-- 512
           + +    ER++  +++G++AY +C +I +           K+    +S V+ F+ L    
Sbjct: 505 QWVARAWERIREEVADGRQAYVVCSRIGDGDSDAELIKAGKEPPETKSAVDLFDELRSGP 564

Query: 513 -HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            H      +     SD +K++VM  F  G   +LI TTV+EVG++V +A+++++ +A+ F
Sbjct: 565 MHDLRLGLLHGRLPSD-EKDAVMRDFTAGAIDVLICTTVVEVGVNVPNATVMVLVDADRF 623

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           G++QLHQLRGRVGRG     CIL+        ++ RL+ +  T DGF +A+ DL+QR+EG
Sbjct: 624 GVSQLHQLRGRVGRGSHQGLCILITDMMPGSPAFERLTAVAGTNDGFELAQLDLRQRREG 683

Query: 632 EILGIKQSGMPKFLIAQPEL-HDSLLEIARKDAKHILTQDPDLT 674
           ++LG  QSG    L     L H+ ++  A++ A+ ++  DPDL+
Sbjct: 684 DVLGSAQSGSATTLRLLSLLEHEDVIASAQEFARGVVDDDPDLS 727


>gi|308807965|ref|XP_003081293.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
 gi|116059755|emb|CAL55462.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
          Length = 1259

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 209/529 (39%), Positives = 311/529 (58%), Gaps = 38/529 (7%)

Query: 167  SVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225
            S+D+F    VE L   PV +    +  LL +    S +EA   IH P   K+ E  + AR
Sbjct: 705  SMDIF----VEKLPADPVEVSMGRDNPLLSELGLLSHSEAVKNIHRP---KNVEIVAQAR 757

Query: 226  ERLAYDELLAGQIALLLMRKQFKKEIGIPIN--VEG------KIAQKILRNIPFSPTKSQ 277
            ERLA++ELL  Q+ALL  R + +    +P++   EG       +  ++   +PF+ T+SQ
Sbjct: 758  ERLAFEELLLLQVALLQERSRLQ---ALPVSETTEGVCIVGTALVDELRTELPFALTRSQ 814

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            ES++++IL DM+    MLR+LQGDVG GKT+VA +++ AAV AG Q   MAP  +LA QH
Sbjct: 815  ESSLEEILSDMAGPAPMLRLLQGDVGCGKTVVAAMSLLAAVGAGHQGAFMAPTEVLATQH 874

Query: 338  Y----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            +    E + +     +++  ++TG+   A R + LE ++ G+  II+GTHAL  + + + 
Sbjct: 875  HRVLTELLSQMRDPPKVV--LLTGSTKTAERAQILEDLSSGKIGIIVGTHALIHEKVVFN 932

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             L + +VDEQHRFGV+QR  L  K    PH+L M+ATPIPRTL +T  G++ +S I EKP
Sbjct: 933  SLGIAVVDEQHRFGVEQRAALLSKGKVPPHMLTMSATPIPRTLAMTKFGEMALSVIDEKP 992

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV---ERFNS 509
            AGR PI T +  ++  D   E ++  + +G +AY I   ++E   S    V    E +  
Sbjct: 993  AGRLPIITKVCAVDEHDIAYEAMRDEVRQGAQAYIIVRLVQESGSSRMSEVKGAEEEYAR 1052

Query: 510  LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L   + +    ++HG++   +K + ++ F  G  + L+AT+V+EVG+DV +ASIIIIE+A
Sbjct: 1053 LVSKYPNVRFGLLHGQLGAEEKAAALEKFSAGETQALVATSVVEVGVDVPNASIIIIEDA 1112

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT-------RLSVLKNTEDGFLIA 621
            + FGLA LHQLRGRVGRG   S C LL+ P + +N+ +       RL VL+ + +GF IA
Sbjct: 1113 DGFGLAALHQLRGRVGRGSRQSKCFLLHTPGVGENAESKEDRARDRLRVLEQSNNGFRIA 1172

Query: 622  EEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQ 669
            E DL+ R  GE+ G KQSG    L       D  LLE ARK A  ++++
Sbjct: 1173 ESDLQLRGAGELFGTKQSGQQVNLFHASMSTDLYLLEAARKAAAEMISR 1221


>gi|300781318|ref|ZP_07091172.1| DNA helicase RecG [Corynebacterium genitalium ATCC 33030]
 gi|300533025|gb|EFK54086.1| DNA helicase RecG [Corynebacterium genitalium ATCC 33030]
          Length = 720

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 224/688 (32%), Positives = 355/688 (51%), Gaps = 60/688 (8%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITL 103
           LL ++P  ++   Y   +        ++  G I Q +     KR  +K  ++DG   I +
Sbjct: 48  LLEHYPRKYLHYGYGDALEGALPGDTISFIGVI-QSTRMIHGKRTIFKAQVSDGRNTIDM 106

Query: 104 LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP 163
            FF         V  EG     TGK+        + HP +I      +N P      S  
Sbjct: 107 SFF--NARYAPRVLAEGTLGMFTGKLSYFNGMPQLQHPDFIL-----LNQPSFSGEKSSG 159

Query: 164 TGLSVDLFKKI--------IVEALSRLPV------LPEW---------------IEKDL- 193
              S    K++        ++     LPV      +  W               +E+ L 
Sbjct: 160 ATHSSGSMKQLAAFGDPDEMLAGREWLPVYAAKKNVSTWTIMGAVATVLEHIGEVEEPLG 219

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL-MRKQFKKEIG 252
              + F S+ +A   IH P           AR RL Y+E L  ++AL++ +R++      
Sbjct: 220 FTPEGFISLQDALWQIHLPGP----HGPDAARNRLKYNEAL--RVALIMAVRREDTAHRT 273

Query: 253 IPI--NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            P    V+ +   ++L  +PFS T  Q   + +I  D+ +   M R+LQG+VGSGKT+VA
Sbjct: 274 APALPRVDKRNQAQLLSALPFSLTDGQLGVLDEITSDLQRTIPMTRLLQGEVGSGKTIVA 333

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRKAL 368
           L AM  AV+ G Q  ++AP  +L  QH + ++K    T +   ++  TG+MP   +++AL
Sbjct: 334 LAAMLQAVDNGMQCALLAPTEVLTLQHEKSLRKTLMRTGVHARVVALTGSMPTVQKQEAL 393

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--APHVLLM 426
             I  G+A I++GTHA+ Q+S++++ L  V+VDEQHRFGV+QR  L  KA    PH+L+M
Sbjct: 394 LAIMTGEADIVVGTHAIIQESVEFFNLGFVVVDEQHRFGVEQRDMLRDKAGDITPHLLVM 453

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGK 483
           TATPIPRT+ +T  GD+++S + E P GRKPI++ I+P  +   +     +++  ++ G 
Sbjct: 454 TATPIPRTIAITVFGDLEVSTLRELPGGRKPIQSAIVPEFKETWVARAWVKIREEVAAGH 513

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +AY +CP+IE         + ER  ++ E     I I+HGRM   DK+ +M  F  G   
Sbjct: 514 QAYIVCPRIE--GPGGVLEMAERLQAV-ELQGLRIEILHGRMKGEDKDRIMSEFSAGEID 570

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +LI+TTVIEVG+DV +A+++++  +EHFG++QLHQLRGRVGRG   S C+          
Sbjct: 571 VLISTTVIEVGVDVPNATVMMVRESEHFGVSQLHQLRGRVGRGGHQSLCLFHTFAEPDTP 630

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKD 662
              R+S +    DGF +AE DL+ R+EG++LG  QSG  + L     + D  +++ A  D
Sbjct: 631 QLERVSRIAEVSDGFELAELDLEIRQEGDVLGTSQSGKERQLKLLNLVEDYEIIQRAYDD 690

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQY 690
           A  I+ +D +L   R  +  ++L  ++Y
Sbjct: 691 AAEIVARDIEL--ARSVTEEMILEEFEY 716


>gi|313836631|gb|EFS74345.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL037PA2]
 gi|314928141|gb|EFS91972.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL044PA1]
 gi|314972139|gb|EFT16236.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL037PA3]
 gi|328907998|gb|EGG27758.1| putative ATP-dependent DNA helicase RecG [Propionibacterium sp.
           P08]
          Length = 749

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 210/643 (32%), Positives = 335/643 (52%), Gaps = 66/643 (10%)

Query: 85  QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           ++RRP    +++L+DG   + + FF +       + +F         GK+ + +    +V
Sbjct: 95  RERRPRQRLEVMLSDGKAHLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154

Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181
           HP ++  +               +  V    +  +Y   + L    +   + +++E+   
Sbjct: 155 HPDFVMIDRNGRVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214

Query: 182 L-PVLPEWI--EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L   LPEW+  E DLL      S+ EA++ IH+P    +    S   ERL ++E +A Q 
Sbjct: 215 LEDTLPEWVRQEADLL------SLWEAYDAIHHPHSVAE---ASRGAERLIWEEAIATQA 265

Query: 239 ALLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            + + R+  ++ +  +    +G +       +PF+PT  Q+   + I  D+S    M R+
Sbjct: 266 TMAVRRRSAERHDAPVCPRRDGGLLAAFENRLPFAPTAGQDEVSRAIDADLSSDRPMHRL 325

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII------ 351
           LQG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  I                
Sbjct: 326 LQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTITSMLGGLASGGGLDAP 385

Query: 352 -----VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
                V ++TG+M  A  R +L  IA G A II+GTH+L    + Y  + LV+VDEQHRF
Sbjct: 386 EISTGVALLTGSMKAAATRASLADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRF 445

Query: 407 GVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           GV+QR  LT    A PH L++TATPIPRT+ +T  GD+++S + E P+GR  ++T ++ +
Sbjct: 446 GVEQRSVLTTGDGARPHELVLTATPIPRTVAMTIFGDLEVSSLREVPSGRADVQTTVVDL 505

Query: 466 ----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR------SVVERFNSLHEHFT 515
               + +    +R++     G + + ICP+I      +        + VE   +  +  T
Sbjct: 506 PAHGSWLTRAWQRIREEYDAGHQVFVICPRISSDDADDVEGGRPPTAAVEELAT--QLAT 563

Query: 516 SSIA-----IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            S+A      +H R+   +K+ VMD F  G  ++LI+TTVIEVG+DV +A++++I +A+ 
Sbjct: 564 GSLAGLKVEALHSRLDSSEKDLVMDRFVKGESQVLISTTVIEVGVDVPNATMMVIMDADR 623

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FG++QLHQLRGR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR E
Sbjct: 624 FGVSQLHQLRGRIGRGSLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHE 683

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672
           G +LG  Q+G    L     L  + +  A KD A+  +T+ PD
Sbjct: 684 GNVLGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVTETPD 726


>gi|224532134|ref|ZP_03672766.1| ATP-dependent DNA helicase RecG [Borrelia valaisiana VS116]
 gi|224511599|gb|EEF82005.1| ATP-dependent DNA helicase RecG [Borrelia valaisiana VS116]
          Length = 686

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 213/625 (34%), Positives = 330/625 (52%), Gaps = 38/625 (6%)

Query: 43  DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LND 96
           DL+ + P  + DR      P  S++    ++T+   +  H  F    ++  K+    +ND
Sbjct: 34  DLIEFFPVKYEDRQNIQTFPDFSKVKSCDMMTVFTVVG-HKKFGDSSKKNLKLTARSIND 92

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---IFHNSQDVNF 153
              EI  L F R    L+NVF   +K  +  K        +    ++   +F ++ +  F
Sbjct: 93  EPFEI--LLFNRA--FLENVFRIDKKFYIYSKFTYNDYSGLWSCSNFDSEVFSDNPE-RF 147

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNP 212
             I  VYSL  GL+       + EAL       +  + K L++K S  S++EA   IH P
Sbjct: 148 KKILPVYSLTEGLTSKKISLYVKEALEYFFKFGQTDVPKFLIEKYSLLSLSEALKEIHFP 207

Query: 213 RKAKDFEWTSPARERLAYDELLAGQI--------ALLLMRKQFKKEIGIPINVEGKIAQK 264
                 E    A++ L Y E+   Q          L   +K   K++           ++
Sbjct: 208 ---SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKVLFREKKHLSKDL----------LER 254

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           ++ ++PF  T+ Q  +I +I  D+     M R+LQGDVGSGKTLVAL++    +EAG Q 
Sbjct: 255 VVSSLPFELTEDQRISIDEIFSDLGSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQV 314

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
             MAP  +LA+QHY+ +     +  + V ++TG++ +  + +ALE I  G + +IIGTHA
Sbjct: 315 AFMAPTDLLARQHYDNLSNILSSFNVSVTLLTGSLKKKDKDQALESIKSGTSGLIIGTHA 374

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +F +S ++ +L  VI+DEQH+FGV QR +L +K     +LLM+ATPIPR+  LT  GD++
Sbjct: 375 IFYESTEFKRLAYVIIDEQHKFGVVQREELKKKGEGVDILLMSATPIPRSFALTLFGDLE 434

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           IS I   P GR PI T +      D+V E LK  L +G + Y++ P I   ++   + V 
Sbjct: 435 ISFIKTLPKGRLPITTYLAKHGNEDKVYEFLKKELIKGHQVYFVYPLISSSEKFELKDVN 494

Query: 505 ERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
                L E F+  +  ++H ++    KE +M +F +    +L+AT+VIEVGID  +A+ +
Sbjct: 495 NMCLKLKEVFSEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCM 554

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           ++E+AE FGL+ LHQ+RGRVGRG   S   LLY  PL+     RL  +K   DGF IAEE
Sbjct: 555 VVEHAERFGLSTLHQIRGRVGRGNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEE 614

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQ 648
           DL+ R  G + G++Q+G  K  I+ 
Sbjct: 615 DLRLRGPGNLFGLEQAGYLKLKISN 639


>gi|313885076|ref|ZP_07818828.1| ATP-dependent DNA helicase RecG [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619767|gb|EFR31204.1| ATP-dependent DNA helicase RecG [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 674

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 213/679 (31%), Positives = 362/679 (53%), Gaps = 31/679 (4%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P+ LN   A L   +G+G K     +++            DLL++ P  F D   RP  S
Sbjct: 2   PTTLNDSIAVL---KGIGPKSVQAFAQL------GVVTIADLLYHLPFRFNDIQERPLAS 52

Query: 63  EISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
            + +E+ VT+ G +      S+  ++R      L     ++  + F+ +  + K V    
Sbjct: 53  ILDQEK-VTLKGRVITPPVVSYFGRRRSRLSFRLELEDHQVIQVVFFNQPYLNKQVALND 111

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            K ++ GK  + +  ++ +    +   + ++  P    VYS   GL   L  + I +AL+
Sbjct: 112 EK-SIYGKWDQTRQTLMGMK---VLKETDNIFQP----VYSATKGLRQSLIVQAISQALA 163

Query: 181 RL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
              P++PE +   L ++    S   A   IH P+  K +E    AR ++ Y E    Q  
Sbjct: 164 EYGPLIPEAVPSFLNERHQLMSSRAALQGIHQPQSYKQYE---AARRKIIYQEFFDYQWQ 220

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L       +++ G+ ++ + ++ +  ++ +PF  T  Q+ A+ +I  D+     M R+LQ
Sbjct: 221 LQTASFNHRQDKGLQVHYDVEVLKVFIKELPFELTSDQKKAVNEICLDLLAPYAMRRMLQ 280

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA +AM A V  G Q  +M P  ILA+QHY+       + +    ++   +
Sbjct: 281 GDVGSGKTIVAFLAMVAGVIGGYQVALMVPTEILAKQHYQNFCNLFPDLEDQTGLLISQI 340

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + +    I  G   +IIGTHAL QD++ ++KL L+++DEQHRFGV QR  L  +  
Sbjct: 341 SSKEKNELQLGIKKGFHQVIIGTHALIQDAVSFHKLGLLVIDEQHRFGVDQRQLLLDQNP 400

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
             ++L MTATPIPR+L L+  GD+ +S I   P+GR+PI+T ++   ++D++   ++ +L
Sbjct: 401 GLNILQMTATPIPRSLALSIYGDMSVSTIQSLPSGRQPIQTRLVSEKQVDKLYLHMQEIL 460

Query: 480 SEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           ++ ++ Y++ P I++ +      N  +V  + + +   +   I I+HG+M+   +   M 
Sbjct: 461 AKEQQIYYVLPIIDQSEHLDQVENVLNVKAKLDQVFPDY--QIEILHGQMAKDQQARAMA 518

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK    ++L+ATT++EVG+DV +A+++II++AE FGLAQLHQLRGRVGRG + S C L+
Sbjct: 519 AFKANEAQVLVATTMVEVGVDVPNATMMIIQSAERFGLAQLHQLRGRVGRGNQPSFCYLI 578

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
            +P  ++    RL ++ +  +GF I++ DLK R  G++LG +QSG+P F  A        
Sbjct: 579 GNPT-TEQGKARLKIMVDESNGFQISKADLKIRGMGDVLGRQQSGLPTFKYANIIEDSDS 637

Query: 656 LEIARKDAKHILTQDPDLT 674
           L  AR+D    L    DL 
Sbjct: 638 LNQARQDVAWCLQHYQDLN 656


>gi|302796276|ref|XP_002979900.1| hypothetical protein SELMODRAFT_444354 [Selaginella moellendorffii]
 gi|300152127|gb|EFJ18770.1| hypothetical protein SELMODRAFT_444354 [Selaginella moellendorffii]
          Length = 931

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 211/616 (34%), Positives = 331/616 (53%), Gaps = 57/616 (9%)

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI---- 156
            T  +F  KT    + + EG K  V+GK+K +  +   +   Y        +F  +    
Sbjct: 310 FTSSWFLNKT---ASGYPEGSKAAVSGKVKAMNRKSHFLLKEYAVKVIDGEDFDQLRNDG 366

Query: 157 EA--VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           EA  VYS    L+    +  I   L  LP   + +  ++  K    SI +A++ +H P  
Sbjct: 367 EAYPVYSSKGLLNPKKIQVFIQRLLKGLPTDIDPLPTEVRDKYDLLSIEQAYSTLHQP-- 424

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE------GKIAQKILRN 268
             + +  + AR R+ +D+    Q+A LL R   +   G  +N E        ++ K+L  
Sbjct: 425 -TNLQGANVARRRIVFDDYFYLQLAFLLQRNCLR---GSTVNNELEMDKWSSLSLKVLNA 480

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF  T  Q  A  +I+ D+ Q+  M R+LQGDVG GKT+VA +A+   V +G QA +MA
Sbjct: 481 LPFKLTAGQIKAASEIMWDLRQQAPMSRLLQGDVGCGKTIVAFLALLDVVSSGYQAALMA 540

Query: 329 PIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           P   +  QHY+    +++   +  +  + +++G++     R   E IA+ +  +I+GTHA
Sbjct: 541 PTDFVVSQHYKQFLSWLEVLDEKDRPKIALLSGSLSAGEARLVREGIANREISLILGTHA 600

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKL--------------------TQKATAPHVL 424
           L  +S  +  L L ++DEQHRFGV QR +L                     + A+  HVL
Sbjct: 601 LISNSTNFPALGLAVIDEQHRFGVGQRDRLKTAHASEAVEPDLDDADLERARLASTTHVL 660

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEG 482
           LM+ATPIPR+L LT  GD+ +S+I E P GR+P+ T ++P +        E ++  L  G
Sbjct: 661 LMSATPIPRSLALTCHGDMSLSQINEIPPGRQPVDTYVLPDDEGGRRRAYELVRAELENG 720

Query: 483 KKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            +A+++ P I E   S+F   R+ V  F+ + + F     A+ HGRM    +   +  F+
Sbjct: 721 GRAFFVYPLINES--SSFEHQRAAVTEFDKVVKEFKDYKCALAHGRMKPDLRNQELKRFR 778

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G C++L+AT V+EVGIDV +A++++IE+AE +GLAQLHQLRGRVGRG   S CILL   
Sbjct: 779 EGECQILVATKVVEVGIDVPEATVMLIESAEGYGLAQLHQLRGRVGRGTRKSFCILL--- 835

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLE 657
                +  RL +L++T DGF +AEEDLK R  G++LG +QSG   +F++A+    + +L 
Sbjct: 836 TCCDTAVERLKLLESTTDGFRLAEEDLKMRGPGDLLGKRQSGTHLEFVLARLGEDNDILL 895

Query: 658 IARKDAKHILTQDPDL 673
            AR  A+ +L  D +L
Sbjct: 896 QARAAAEELLETDKNL 911


>gi|183601828|ref|ZP_02963197.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219682743|ref|YP_002469126.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190319|ref|YP_002967713.1| RecG-like helicase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195725|ref|YP_002969280.1| RecG-like helicase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218713|gb|EDT89355.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620393|gb|ACL28550.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248711|gb|ACS45651.1| RecG-like helicase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250279|gb|ACS47218.1| RecG-like helicase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|295793306|gb|ADG32841.1| RecG-like helicase [Bifidobacterium animalis subsp. lactis V9]
          Length = 790

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 200/530 (37%), Positives = 293/530 (55%), Gaps = 46/530 (8%)

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            +P+ +  +LL + +    A+AF+ IH+P     F   + A   + Y+E    Q AL+  
Sbjct: 243 AIPDILPGNLLAELNLMHRAQAFSQIHDPDSVGAF---TQAITTMRYEEAFVCQTALIRA 299

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R    +E    +  + ++  + +  +PF  TK Q   + +I  DM Q + M R+LQG+VG
Sbjct: 300 RHD-AREHNAYVCSDVQLRDEYIDTLPFVLTKGQREVVDEISHDMCQDHPMQRLLQGEVG 358

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ AM  AV +G QAV++AP  +LA+QHY+ I        ++  ++TG M  A 
Sbjct: 359 SGKTVVAVSAMLQAVGSGHQAVLVAPTQVLAEQHYQSISNVFNRAPVL--LLTGGMKLAE 416

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PH 422
           RRK L   A G+  I++ THA F  S Q   L L ++DEQHRFGV+QR  L  K+   PH
Sbjct: 417 RRKVLGTAASGEPCIVVATHAAFSKSFQAPNLALAVIDEQHRFGVEQRETLRSKSDVDPH 476

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVL 479
           +L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+TV+IP      + E+   ++  +
Sbjct: 477 LLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIQTVVIPEENAPLMAEMFWHIRHRI 536

Query: 480 SEGKKAYWICPQIEEKK----------------------------ESNFRS-------VV 504
             G++AY +CP+IEE                              E+N R+       + 
Sbjct: 537 DAGERAYIVCPRIEESTEDAEGGESGGDARADSDDGMLLSDEDLGETNARAPLHSVHEIS 596

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           ER  SL +        + GR  D  KE VM  F +G   +++ATTVIEVG+DV  AS I+
Sbjct: 597 ERLQSLPQFQGVRFCELTGRDDDETKERVMAEFASGQTPVMVATTVIEVGVDVPQASCIV 656

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ +GL+QLHQLRGRVGRG   S   L+     +  +  RL V+ ++ DG LIA++D
Sbjct: 657 IFDADRYGLSQLHQLRGRVGRGGTHSWAFLVSQAEPNSIAEQRLDVIAHSLDGALIAQKD 716

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673
           L+ R  G++LG  QSG    L     + D +++  ARK A+ +L  DP L
Sbjct: 717 LELRGAGDVLGDTQSGGRSSLKLLRVVKDAAMITDARKRAELLLDADPTL 766


>gi|289178040|gb|ADC85286.1| RecG [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 825

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 200/530 (37%), Positives = 293/530 (55%), Gaps = 46/530 (8%)

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            +P+ +  +LL + +    A+AF+ IH+P     F   + A   + Y+E    Q AL+  
Sbjct: 278 AIPDILPGNLLAELNLMHRAQAFSQIHDPDSVGAF---TQAITTMRYEEAFVCQTALIRA 334

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R    +E    +  + ++  + +  +PF  TK Q   + +I  DM Q + M R+LQG+VG
Sbjct: 335 RHD-AREHNAYVCSDVQLRDEYIDTLPFVLTKGQREVVDEISHDMCQDHPMQRLLQGEVG 393

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ AM  AV +G QAV++AP  +LA+QHY+ I        ++  ++TG M  A 
Sbjct: 394 SGKTVVAVSAMLQAVGSGHQAVLVAPTQVLAEQHYQSISNVFNRAPVL--LLTGGMKLAE 451

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PH 422
           RRK L   A G+  I++ THA F  S Q   L L ++DEQHRFGV+QR  L  K+   PH
Sbjct: 452 RRKVLGTAASGEPCIVVATHAAFSKSFQAPNLALAVIDEQHRFGVEQRETLRSKSDVDPH 511

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVL 479
           +L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+TV+IP      + E+   ++  +
Sbjct: 512 LLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIQTVVIPEENAPLMAEMFWHIRHRI 571

Query: 480 SEGKKAYWICPQIEEKK----------------------------ESNFRS-------VV 504
             G++AY +CP+IEE                              E+N R+       + 
Sbjct: 572 DAGERAYIVCPRIEESTEDAEGGESGGDARADSDDGMLLSDEDLGETNARAPLHSVHEIS 631

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           ER  SL +        + GR  D  KE VM  F +G   +++ATTVIEVG+DV  AS I+
Sbjct: 632 ERLQSLPQFQGVRFCELTGRDDDETKERVMAEFASGQTPVMVATTVIEVGVDVPQASCIV 691

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ +GL+QLHQLRGRVGRG   S   L+     +  +  RL V+ ++ DG LIA++D
Sbjct: 692 IFDADRYGLSQLHQLRGRVGRGGTHSWAFLVSQAEPNSIAEQRLDVIAHSLDGALIAQKD 751

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673
           L+ R  G++LG  QSG    L     + D +++  ARK A+ +L  DP L
Sbjct: 752 LELRGAGDVLGDTQSGGRSSLKLLRVVKDAAMITDARKRAELLLDADPTL 801


>gi|257784663|ref|YP_003179880.1| helicase domain-containing protein [Atopobium parvulum DSM 20469]
 gi|257473170|gb|ACV51289.1| helicase domain protein [Atopobium parvulum DSM 20469]
          Length = 730

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 225/675 (33%), Positives = 363/675 (53%), Gaps = 53/675 (7%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKIS--EISEERIVTITGYISQHSSFQLQKRRPYKILLN-- 95
           R  DLL   P  ++D  +R +I+  +I E+   TITG ++   S + ++ RP  +++   
Sbjct: 46  RVRDLLLNVPHRYLDFSHRVQIAFAQIGED--ATITGRVA---SVKTKRPRPKMVIVEIE 100

Query: 96  --DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI------KKLKNRIIMVHPHYIFHN 147
             D TG +T  FF R+  + + +  +  ++ ++GK+      +++K+    V       +
Sbjct: 101 VVDDTGALTASFF-RQPWVAEQIHVDD-EVALSGKVLFAYGFRQMKSPFYEVLSTAKSDS 158

Query: 148 SQDV------NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPS 201
           + +V      +  +I  V+    G+S    ++I+  AL+    + +W   +L+ K    S
Sbjct: 159 ADEVCSKEIPSKAVILPVHPATEGVSPAWMRRIMSAALADTGSVCDWFPSELVSKHHLMS 218

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN--VEG 259
           ++ A   +H P      E    AR RLA+DELL+     LL R+  +     P    ++G
Sbjct: 219 LSSALREVHFP---SSMEAAEQARRRLAFDELLS-LQLALLTRRNLELAGHKPFEHVIDG 274

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
              Q ++  +PF+ T  Q  A+++IL DM+  + M R+L GDVG+GKT VA +A+AA  +
Sbjct: 275 PKVQALIEALPFTLTDEQNQAVQEILSDMAAPHIMNRLLLGDVGTGKTAVAAVALAAVAD 334

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +  QA +MAP  +LAQQ+ + I     +  I+  +ITG   +  R++    +A G   ++
Sbjct: 335 SSAQAAVMAPTSVLAQQYAQKIGPLLSSAGIMWALITGATSEEERQQIELCLADGSLSVV 394

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
            GT AL  + + + +L L +VDEQHRFGV QR  L +K     +L M+ATPIPRTL L+ 
Sbjct: 395 FGTTALLSERVVFKQLTLAVVDEQHRFGVDQRTALRKKGQGVDLLAMSATPIPRTLALSL 454

Query: 440 LGDIDISKITEKP-AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI-----E 493
            GD+D S+IT++P AG      + +P N +D+    +   +  G +AY +CP I     E
Sbjct: 455 YGDVDTSRITKRPRAGAGVTTKLCVPEN-LDQAYAAVAEAVQAGHQAYLVCPLIDSNDSE 513

Query: 494 EKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           E+ E             S  R   E   ++ + FT    ++ GR+ +  K+ +M+ F+  
Sbjct: 514 EELEDIPEAARTNGKLYSATRVYEELSQTVFKDFTCD--LLTGRLPEAQKDQIMEKFRAN 571

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L++TTVIEVG+DV +A+++I+ NA+ FGLA LHQLRGRVGRG+   +  L  +   
Sbjct: 572 KTQILVSTTVIEVGVDVPNATVMIVFNADRFGLATLHQLRGRVGRGDFPGTVYLASNAKR 631

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
              +  RL+ L+ T DG  +AE DL+ R EGE LG +QSG     I+       L+E A 
Sbjct: 632 GSTARKRLAALEQTSDGAHLAELDLELRHEGETLGYRQSGGTTLKISDLYADADLIEAAH 691

Query: 661 KDAKHILTQDPDLTS 675
           KDA  I TQDP+LTS
Sbjct: 692 KDALAITTQDPNLTS 706


>gi|15827885|ref|NP_302148.1| ATP-dependent DNA helicase RecG [Mycobacterium leprae TN]
 gi|13432220|sp|O69460|RECG_MYCLE RecName: Full=ATP-dependent DNA helicase recG
 gi|13093438|emb|CAC30624.1| ATP-dependent DNA helicase [Mycobacterium leprae]
          Length = 743

 Score =  320 bits (820), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 218/665 (32%), Positives = 347/665 (52%), Gaps = 79/665 (11%)

Query: 43  DLLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL-LNDG 97
           DLL ++P S+      R  + +  E  E   +TI   I++  +  ++K    K L L  G
Sbjct: 31  DLLRHYPRSYTKGATVRGAQDERPEAGEH--ITIVDVITEAVTLPMKKDSKKKYLRLTVG 88

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----- 152
           +G   ++  +     +     +  ++ ++G++   +  + + HP ++  +S D       
Sbjct: 89  SGRNKVIATFFNAGYISKGLTKDTRVMLSGEVGFFRGVMQLTHPAFLILDSPDGRNRGSS 148

Query: 153 -------------------------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
                                    FP+  A   L    S D++   + + L  L  + +
Sbjct: 149 SLRRIADASQAVSGEVLMSAFERRFFPIYPASTKLQ---SWDIYA-CVRQVLEVLDPVAD 204

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +  DL  K    S  EA   IH      D      ARERL +DE +  Q AL+  R   
Sbjct: 205 PLPADLRAKHGLVSEDEALRAIHLAESESD---RRRARERLTFDEAVGLQWALVTRRHGE 261

Query: 248 KKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML-RILQGDVGS 304
             E G   P   +G +A+ ++R +PF  T+ Q   ++D+L D     R L R+LQG+VGS
Sbjct: 262 LSESGPSAPPRSDGLMAE-LMRRLPFELTEGQRE-VRDVLSDGLAATRPLNRLLQGEVGS 319

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVE 353
           GKT+VA++AM   ++AG Q V++AP  +LA QH   I+                    V 
Sbjct: 320 GKTIVAVLAMLQMIDAGYQCVLLAPTEVLAAQHLLSIRDVLGPLGMGCQLGGAENATQVA 379

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+M  A ++K    I  GQ  I+IGTHAL QD+I+++ L +V+VDEQHRFGV+QR +
Sbjct: 380 LLTGSMTMAQKKKVRADIFSGQTGIVIGTHALLQDAIEFHNLGMVVVDEQHRFGVEQRDQ 439

Query: 414 LTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----N 466
           L  KA     PH+L+MTATPIPRT+ LT  GD+++S + E P GR+PI + +I +     
Sbjct: 440 LRTKARTGIMPHLLVMTATPIPRTVALTVYGDLEMSTLRELPRGRQPITSNVIFVKDKPG 499

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEE-----KKESNFRSVVERFNSLHEHFTSS---- 517
            +D   +R+   ++ G++AY + P+I+E     K   N R   E  + L+    S     
Sbjct: 500 WLDRAWQRILEEVAAGRQAYVVAPRIDETEDPQKGGQNSRPS-ETADGLYARLRSGELAN 558

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +A++HGR+S  +K++ M +F+ G   +L+ T VIEVG+DV +A+I+++ +A+ FG++Q
Sbjct: 559 VRLALMHGRLSADEKDAAMMAFRAGEIDVLVCTNVIEVGVDVPNATIMLVMDADRFGISQ 618

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGR+GRG   S C+L         +  RL  +  T DGF +A+ DLK+R+EG++LG
Sbjct: 619 LHQLRGRIGRGTHPSLCLLASWVSPGSPAGRRLCAVAETMDGFALADLDLKERREGDVLG 678

Query: 636 IKQSG 640
             QSG
Sbjct: 679 RNQSG 683


>gi|320533345|ref|ZP_08034038.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320134440|gb|EFW26695.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 752

 Score =  320 bits (819), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 230/758 (30%), Positives = 371/758 (48%), Gaps = 96/758 (12%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           VGK+ +  L+K        ET   DLL   P  +        +  + E    TI   + +
Sbjct: 5   VGKRTAAQLAK-----QGVET-GADLLRLLPRRYDTWGELTDMRTLVEGEQATIQAQVVR 58

Query: 79  HSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNV--FFEGRKITVTGKIKKLK 133
            SS + +  R   ++   + DG   + L+ F    +M         G  + ++GK+   +
Sbjct: 59  ASSRRTRSGRVPALMEATVTDGASTMDLVQFGATGQMRARASQLAPGTTVLLSGKVGLHR 118

Query: 134 NRIIMVHPH-YIFHNSQDVN--------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
            R  + +P  Y+     +           P+     +LP+ L V    +I+++ L    V
Sbjct: 119 GRKQLSNPRLYVLDELDEAEREALLARPMPIYPGTEALPSWL-VAKAVRIVLDQLEPGDV 177

Query: 185 ---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              +PE + +++    ++     A+  +H P  ++  +W + AR RL ++E L  Q+AL 
Sbjct: 178 ADPIPEELRREMGLVDAY----TAYRWVHRPEDSR--QWKA-ARSRLRHEEALILQVALA 230

Query: 242 LMR---KQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
             R   +  +  +  P+   E  +   +   +P+  T  QE   ++I  D+++   M R+
Sbjct: 231 QRRAHHEATRTAVAWPVPETEDSLRADLDARLPYDLTAGQERVGREISADLARTVPMQRL 290

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQ 346
           LQGDVGSGKTLVAL AM   +  GGQA ++AP  +LA QH+  ++               
Sbjct: 291 LQGDVGSGKTLVALRAMLQVIGGGGQAALLAPTEVLAAQHHSSLEAVLGPMARLGMLGGA 350

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
                V ++TG+ P A RR+ L  +A G+  I++GTHAL  D++Q   L LV+VDEQHRF
Sbjct: 351 ERATRVHLLTGSTPTAQRRQILADLAAGEPAIVVGTHALLSDTVQIPFLGLVVVDEQHRF 410

Query: 407 GVQQRLKL----------TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           GV QR  L          T ++  PH+L+MTATPIPRT+ +T  GD+  S + E PAGR 
Sbjct: 411 GVAQRDALRERGGLTDPATGQSHTPHLLVMTATPIPRTIAMTVFGDLATSVLDELPAGRS 470

Query: 457 PIKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKE---------SNFRS-- 502
            + T ++P +RI   + +  R    ++ G + Y +CP+IE   E         + F +  
Sbjct: 471 AVPTHLVPWSRISWVEGIWRRAAKEVASGGRVYVVCPRIEVDDEPRQVQTEGAAAFETED 530

Query: 503 ---------------------VVERFNSLHEHFTS----SIAIIHGRMSDIDKESVMDSF 537
                                 VE +    +   +     + ++ GRMS   K + M  F
Sbjct: 531 GQGPEPLTDEGSGSHPDRPLAAVEEWRRRLDGEPALEGIGVGVLTGRMSSEGKAASMADF 590

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G   +L++TTVIEVG+DV +AS+++I +A+ FGL+QLHQLRGRVGRG   S C+ +  
Sbjct: 591 ASGATPVLVSTTVIEVGVDVPEASMMVILDADRFGLSQLHQLRGRVGRGSRPSLCVAVTG 650

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LL 656
             +   ++ RL    +T DGF +AE DL+ R EG++LG  QSG    L       D+ L+
Sbjct: 651 AEVGSTAFHRLKAFASTTDGFALAEADLELRSEGDVLGASQSGRASGLDLLRVTRDARLI 710

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
             AR+ A+ I+  DP L+  R  +  I+  L + ++AF
Sbjct: 711 ATARRQAERIVAADPQLSEHRALAAAIVERLDEESQAF 748


>gi|227494674|ref|ZP_03924990.1| possible DNA helicase RecG [Actinomyces coleocanis DSM 15436]
 gi|226831856|gb|EEH64239.1| possible DNA helicase RecG [Actinomyces coleocanis DSM 15436]
          Length = 697

 Score =  319 bits (818), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 231/698 (33%), Positives = 354/698 (50%), Gaps = 52/698 (7%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           +P++LN    PL    G     S    K+   G  N     DLL ++P  ++       +
Sbjct: 3   KPTWLN---TPLERLLG-----SRTAKKLAPLGLENTA---DLLHFYPRRYLHWGKLTPL 51

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLN----DGTGEITLLFFYR---KTEMLK 114
             +      TI   +    S QL   R   + LN    DG   IT  FF     K  + +
Sbjct: 52  YSLHPNEDATILASVQ---SQQLHANRNGGVRLNVELTDGHSTITATFFATHPAKLSVHQ 108

Query: 115 NVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN------FPLIEAVYSLPTGLSV 168
            +   G +    G I + + ++ + HP +     +DV        P+  A    PT  + 
Sbjct: 109 GLLKPGTQHLFAGTISQYRGQLQLTHPSF-EEAGEDVERILTKPIPVYPASSKCPTWFTA 167

Query: 169 DLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
                II++ + +  +L  +   +  +K     + EA   IH P    D      A+  L
Sbjct: 168 KAVG-IILDQMRQEDLLDPFTASEK-EKYGLLDLIEAIEKIHRPNTDTDI---PKAKHTL 222

Query: 229 AYDELLAGQIALLLMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286
            + E    Q A    R    +     IP     +I  +++ N  +  T  Q++AI ++L 
Sbjct: 223 KWVEAFELQAAFAQQRHTNAQARAKTIPATAT-EIIPEVIENFGYELTGGQQTAIAEVLA 281

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           DMS++  M R+LQ DVG+GKT+VA I M+  V AG QA ++AP  +LAQQH   +++   
Sbjct: 282 DMSREVPMQRLLQADVGAGKTIVAGILMSVVVNAGYQAALLAPTEVLAQQHALNLRRLLP 341

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              + VE++TG+     R+   E    GQ  +++GTHAL QDS+ +  L LV++DEQHRF
Sbjct: 342 ---VPVELLTGSSKAGTRKHIAEITGSGQPAVLVGTHALLQDSLTFKNLALVVIDEQHRF 398

Query: 407 GVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           GV QR KL +     PH+L MTATPIPRT+ +T  GD+DI++I E P GR P+KT  +  
Sbjct: 399 GVAQREKLRENQDFVPHLLSMTATPIPRTIAMTVFGDLDITEIRELPKGRIPVKTHTV-- 456

Query: 466 NRIDEV-IERLKVVLSE----GKKAYWICPQI-EEKKESNFRSVVE---RFNSLHEHFTS 516
           N  +   ++RL V   E    G + + + P+I +E+ +S   SV +   R  +L      
Sbjct: 457 NECNHAWMQRLWVRSREEIEAGGRVFVVAPRIGDEESDSELASVTQTAQRLRNLPALQGI 516

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +  +HG+++  +K  ++  F  G   LL+ TTVIEVG+D+ DAS+++I +A+ FGL+QL
Sbjct: 517 KVGELHGKLTPEEKAQIISDFNTGQLSLLVTTTVIEVGVDIKDASLMVILDAQQFGLSQL 576

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG + ++CI +Y    + +S  RL    +T  GF +AE DLK R EG +LG 
Sbjct: 577 HQLRGRVGRGGQAATCIAVYSAEANPDSIERLEAFASTNSGFELAEYDLKLRCEGNVLGQ 636

Query: 637 KQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDL 673
            QSG    L A   L D+ ++  AR  A  ++ +DP L
Sbjct: 637 SQSGKTTSLKALRVLRDADIIASARDLALAVVAEDPQL 674


>gi|298253296|ref|ZP_06977088.1| RecG-like helicase [Gardnerella vaginalis 5-1]
 gi|297532691|gb|EFH71577.1| RecG-like helicase [Gardnerella vaginalis 5-1]
          Length = 750

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 209/611 (34%), Positives = 323/611 (52%), Gaps = 76/611 (12%)

Query: 138 MVHPHYIFH-NSQDVNFPLIEAVYSLPTGLSVD----LFKKIIVEALSRLPVLPEWIEKD 192
           M  P  ++H NS+  +  + E + S+ + LS D       K      S    +P+   + 
Sbjct: 123 MSAPMPVYHANSRISSEHIHETILSILSALSKDSEDSAASKNSAACTSEFLQIPDITPES 182

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
           +L+K++  + A A   IHNP+   +F     A + L Y+E    Q+A+L  R+  K    
Sbjct: 183 VLKKRNLMTRASAIYSIHNPQSVDEF---YKAVDSLRYEEAFISQVAVLRSREDSKDNQA 239

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
              N    I  + + ++PF  T  Q+  I +I++DM + + M R+LQG+VGSGKT+VAL 
Sbjct: 240 KSCN-NSLIRNEFVESLPFELTAGQKDVIDEIVRDMREHHPMRRLLQGEVGSGKTVVALA 298

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY--TQNTQIIVEIITGNMPQAHRRKALER 370
           AM  AV +G QAV++AP  +LA QH E +++     N ++ V ++TG M  A RR+AL  
Sbjct: 299 AMLEAVGSGYQAVLVAPTQVLASQHAENLRQMIARANLKVPVIVVTGGMRLADRRRALAS 358

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-----------TQKAT 419
           +A G+  +I+ THA F  + +   L LVI+DEQHRFGV+QR  L            +K+ 
Sbjct: 359 VASGEPSLIVATHAAFSSTFKPINLALVIIDEQHRFGVEQRDVLLRKMSVDSHNSAEKSF 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII---PINRIDEVIERLK 476
            PH+L+MTATPIPR+  +T  GD+D S +TE P GRKPI+T ++     N +  +   ++
Sbjct: 419 TPHLLVMTATPIPRSAAMTWFGDLDASYLTELPGGRKPIRTFVVQESDANTMARMFAHIR 478

Query: 477 VVLSEGKKAYWICPQIEE-----------------------------------------K 495
             +  G++AY +C  I++                                          
Sbjct: 479 ARIDAGERAYVVCAHIDDDFNEDSGRDSGSASVSNFGRDFDSDESEGFEDVSQSVQSNQS 538

Query: 496 KESNFRS---------VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +E+N  S         +++R ++L +    + A + GR  D  K   M+ F  G  ++L+
Sbjct: 539 EENNADSLRKLHTVNGILKRLSALPQFKGVTFAKLTGRDDDATKRETMERFARGDVQVLV 598

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVG+DV  AS I+I +A+ FGLAQLHQLRGRVGRG   S   L+        +  
Sbjct: 599 ATTVIEVGVDVPQASCIVIFDADRFGLAQLHQLRGRVGRGGTNSWAFLVAQTEDGSLAQE 658

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKH 665
           RL V++N+ DG +IA++DL+ R  G++LG KQSG    L     + D+ ++ +AR+DA  
Sbjct: 659 RLQVVENSLDGAVIAKKDLELRNVGDVLGDKQSGGRSSLKILRVVKDAKIIAMAREDALE 718

Query: 666 ILTQDPDLTSV 676
            L +D  L S+
Sbjct: 719 TLQKDTHLVSL 729


>gi|283457869|ref|YP_003362469.1| RecG-like helicase [Rothia mucilaginosa DY-18]
 gi|283133884|dbj|BAI64649.1| RecG-like helicase [Rothia mucilaginosa DY-18]
          Length = 1215

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 215/678 (31%), Positives = 336/678 (49%), Gaps = 100/678 (14%)

Query: 89   PYKILLNDGT---GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145
            P   + N G     ++ L FF   T   +    EG  +  +G++   +    + +PHY  
Sbjct: 520  PAPSMTNPGALIGSQMKLSFFNAWTAARE--IREGETMMFSGRVGIYRGEYTLTNPHYAL 577

Query: 146  HNSQDVNFPLIEA------VYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKK 197
             +       + +A      VY  P  LS D     + + L ++P+  L + +   + + +
Sbjct: 578  LSKDASGADVTDAATAPVPVYRAPVKLSTDRISGYMAQLLEKVPLKELEDPVPYTIRRAR 637

Query: 198  SFPSIAEAFNIIHNPRKAKDFE--WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP- 254
              PS+   +  +H P    D E  W + A+ ++ Y E    Q AL  +       +  P 
Sbjct: 638  KVPSLEWTYRALHTP----DSEDTWRA-AQAQMRYREAFVLQSALARLHSVRAAHLTQPR 692

Query: 255  INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              VEG +A ++L+ +P+  T+ Q+    +I  D+S ++ M R+LQGDVGSGKT+VAL AM
Sbjct: 693  PAVEGGLADRLLQVLPYELTEGQQKVGAEIAADLSSESPMNRLLQGDVGSGKTVVALRAM 752

Query: 315  AAAVEAGGQAVIMAPIGILAQQHYEFI----------------------------KKYTQ 346
                +AGGQ+ ++AP  +LA+QH   +                                +
Sbjct: 753  LQVADAGGQSAMLAPTEVLAEQHLRSVLDILGDMAAPEDSDADDSAADSAEGIPAGSGAE 812

Query: 347  NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              ++ V ++T +M    +RK L+ +A G A I+IGTHAL  D + ++ L LV+VDEQHRF
Sbjct: 813  PGRVRVRLLTASMGTRAKRKVLQELADGTAQIVIGTHALLSDEVSFHDLGLVVVDEQHRF 872

Query: 407  GVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            GV+QR  L     A PH L+MTATPIPRT+ +T  GD+D+S +   PAGR+ I T ++P+
Sbjct: 873  GVEQRDSLRGTGGALPHRLVMTATPIPRTVAMTVFGDLDVSVLDTLPAGRQKISTHVVPL 932

Query: 466  NR----IDEVIERLKVVLSEGKKAYWICPQIEEKKES--------------NFRSVVERF 507
                     +  R +  +  G + Y + P+I E  +S                 +     
Sbjct: 933  AEKPAWASRLWRRAREEIDAGHQVYVVVPKIGEDGDSLEEGAAFFGASSLNGAGTGAGAG 992

Query: 508  NSLHEHF-----TSS--------------------------IAIIHGRMSDIDKESVMDS 536
            NS   +F     TSS                          I  +HGRM   +K +VM +
Sbjct: 993  NSAQGYFGQGGSTSSDGKVQLTSVASMYSYLSAEDALVGVRIGTLHGRMDPAEKTAVMTA 1052

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F+ G   LLI+TTVIEVG++V +A+++II +A+ FG++ LHQLRGRVGRG    +C+L+ 
Sbjct: 1053 FERGEIDLLISTTVIEVGVNVPNATLMIIMDADRFGISGLHQLRGRVGRGGYAGTCLLVT 1112

Query: 597  HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-L 655
                   S  RL  + +T DGF ++  DL QR+EG+ILG  QSG    L     L D+ +
Sbjct: 1113 RQEEGGVSRERLDAVASTTDGFELSRIDLAQRREGDILGAAQSGSKSTLRFLRALADADI 1172

Query: 656  LEIARKDAKHILTQDPDL 673
            +E AR+DA+ ++ +DP L
Sbjct: 1173 IERAREDARSVVEKDPTL 1190


>gi|221230362|ref|YP_002503778.1| ATP-dependent DNA helicase RecG [Mycobacterium leprae Br4923]
 gi|219933469|emb|CAR71766.1| ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
          Length = 743

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 218/665 (32%), Positives = 346/665 (52%), Gaps = 79/665 (11%)

Query: 43  DLLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL-LNDG 97
           DLL ++P S+      R  + +  E  E   +TI   I++  +  ++K    K L L  G
Sbjct: 31  DLLRHYPRSYTKGATVRGAQDERPEAGEH--ITIVDVITEAVTLPMKKDSKKKYLRLTVG 88

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----- 152
           +G   ++  +     +     +  ++ ++G++   +  + + HP ++  +S D       
Sbjct: 89  SGRNKVIATFFNAGYISKGLTKDTRVMLSGEVGFFRGVMQLTHPAFLILDSPDGRNRGSS 148

Query: 153 -------------------------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
                                    FP+  A   L    S D++   + + L  L  + +
Sbjct: 149 SLRRIADASQAVSGEVLMSAFERRFFPIYPASTKLQ---SWDIYA-CVRQVLEVLDPVAD 204

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +  DL  K    S  EA   IH      D      ARERL +DE +  Q AL+  R   
Sbjct: 205 PLPADLRAKHGLVSEDEALRAIHLAESESD---RRRARERLTFDEAVGLQWALVTRRHGE 261

Query: 248 KKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML-RILQGDVGS 304
             E G   P   +G +A+ ++R +PF  T+ Q   ++D+L D     R L R+LQG+VGS
Sbjct: 262 LSESGPSAPPRSDGLMAE-LMRRLPFELTEGQRE-VRDVLSDGLAATRPLNRLLQGEVGS 319

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVE 353
           GKT+VA++AM   ++AG Q V++AP  +LA QH   I+                    V 
Sbjct: 320 GKTIVAVLAMLQMIDAGYQCVLLAPTEVLAAQHLLSIRDVLGPLGMGCQLGGAENATQVA 379

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+M  A ++K    I  GQ  I+IGTHAL QD+I+++ L +V+VDEQHRFGV+QR +
Sbjct: 380 LLTGSMTMAQKKKVRADIFSGQTGIVIGTHALLQDAIEFHNLGMVVVDEQHRFGVEQRDQ 439

Query: 414 LTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----N 466
           L  KA     PH+L+MTATPIPRT+ LT  GD+++S + E P GR+PI + +I +     
Sbjct: 440 LRTKARTGIMPHLLVMTATPIPRTVALTVYGDLEMSTLRELPRGRQPITSNVIFVKDKPG 499

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEE-----KKESNFRSVVERFNSLHEHFTSS---- 517
            +D   +R+   ++ G++AY + P+I+E     K   N R   E    L+    S     
Sbjct: 500 WLDRAWQRILEEVAAGRQAYVVAPRIDETEDPQKGGQNSRPS-ETAEGLYARLRSGELAN 558

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +A++HGR+S  +K++ M +F+ G   +L+ T VIEVG+DV +A+I+++ +A+ FG++Q
Sbjct: 559 VRLALMHGRLSADEKDAAMMAFRAGEIDVLVCTNVIEVGVDVPNATIMLVMDADRFGISQ 618

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGR+GRG   S C+L         +  RL  +  T DGF +A+ DLK+R+EG++LG
Sbjct: 619 LHQLRGRIGRGTHPSLCLLASWVSPGSPAGRRLCAVAETMDGFALADLDLKERREGDVLG 678

Query: 636 IKQSG 640
             QSG
Sbjct: 679 RNQSG 683


>gi|297737705|emb|CBI26906.3| unnamed protein product [Vitis vinifera]
          Length = 988

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 214/657 (32%), Positives = 332/657 (50%), Gaps = 95/657 (14%)

Query: 95  NDGTGEITLLF----FYRKTEMLKNVFF--------EGRKITVTGKIKKLKNRIIMVHPH 142
           ND  G+ T+      F+R T      F         EG  + V+GK++ ++ +      H
Sbjct: 328 NDSWGKKTIYLHLKKFFRGTRFTNVPFLRCLQEKHKEGDIVCVSGKVRTMRTK-----DH 382

Query: 143 YIFHNSQDVNFPLIE--------------AVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           Y     ++ N  LIE              ++Y    GL+ +  + II  AL  LPV  + 
Sbjct: 383 Y---EMREYNLDLIEDDQDSSVCPKGRPYSIYPSKGGLNSNFLRDIISRALHSLPVNIDP 439

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           I KD+++     S+  A+  IH P   KD +    AR+RL +DE    Q+  L    Q  
Sbjct: 440 IPKDIIEDFGLLSLHSAYVGIHQP---KDLKEADLARKRLIFDEFFYLQLGRLF---QIL 493

Query: 249 KEIGIPINVEG-------------------KIAQKILRNIPFSPTKSQESAIKDILQDMS 289
           + +G  I  +G                    + +  L+ +P+S T SQ SA  +I+ D+ 
Sbjct: 494 EGLGTKIEKDGLLDKYRKPELNTVFVEEWSSLTKNFLKALPYSLTSSQLSAASEIIWDLK 553

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           +   M R+LQGDVG GKT+VA +A    + +G QA  M P  +LA QHYE +    +N +
Sbjct: 554 RPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLALQHYEQLINLLENME 613

Query: 350 II-----VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                  + ++TG+ P    R   + + +G   ++IGTH+L  + +++  L + +VDEQH
Sbjct: 614 GAECKPSIALLTGSTPSKQSRMTHKGLQNGDISLVIGTHSLISEKVEFSALRIAVVDEQH 673

Query: 405 RFGVQQRLKLTQK-----------------------ATAPHVLLMTATPIPRTLVLTSLG 441
           RFGV QR +   K                         APH+L M+ATPIPRTL L   G
Sbjct: 674 RFGVIQRGRFNSKLYYNSISSRMAEASSDVLSEGDTRMAPHILAMSATPIPRTLALALYG 733

Query: 442 DIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKE-S 498
           D+ +++IT+ P GR P++T  I       ++V + +   L  G K Y + P IE+ ++  
Sbjct: 734 DMSLTQITDLPPGRTPVETYTIEGCDAGFEDVYQMMLDELEVGGKIYIVYPVIEQSEQLP 793

Query: 499 NFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             R+      ++   F      ++HGRM   +K+  +  F++G   +L++T VIE+G+DV
Sbjct: 794 QLRAASTDLETISSRFQGYKCGLLHGRMKSDEKDEALRRFRSGETNILLSTQVIEIGVDV 853

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            DAS++++ NAE FG+AQLHQLRGRVGRG   S C+L+     + +   RL VL+N+ DG
Sbjct: 854 PDASMMVVMNAERFGIAQLHQLRGRVGRGVRKSKCLLVSS---TASGLNRLKVLENSSDG 910

Query: 618 FLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           F +A  DL  R  G++LG KQSG +P+F IA+ E+  ++L+ A   A  IL    DL
Sbjct: 911 FYLANMDLLLRGPGDLLGKKQSGHLPEFPIARLEIDGNILQEAHLAALKILGTSHDL 967


>gi|51598833|ref|YP_073021.1| ATP-dependent DNA helicase RecG [Borrelia garinii PBi]
 gi|51573404|gb|AAU07429.1| DNA recombinase [Borrelia garinii PBi]
          Length = 686

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 209/623 (33%), Positives = 335/623 (53%), Gaps = 34/623 (5%)

Query: 43  DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LND 96
           DL+ + P  + DR      P  S++    ++T+   I  H  F    ++  K+    +ND
Sbjct: 34  DLIEFFPVKYEDRQNIQTFPDFSKVKSFDMMTVFTVIG-HKKFGDSSKKNLKLTARSIND 92

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---IFHNSQDVNF 153
            + EI  L F R    L+NVF   +K  +  K        +    ++   +F +S +  F
Sbjct: 93  ESFEI--LLFNRA--FLENVFRIDKKFYIYSKFTYNDYSGLWSCSNFDSEVFSDSPE-RF 147

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNP 212
             I  VYSL  GL+       + EAL       +  I K L++K S  S++EA   IH P
Sbjct: 148 KKILPVYSLTEGLTSKKISLYVREALEYFFKFGQTDIPKFLIEKYSLLSLSEALKEIHFP 207

Query: 213 RKAKDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKIL 266
                 E    A++ L Y E+   Q       + +L R++         ++   + ++++
Sbjct: 208 ---SSLEMLERAKKTLIYREIFLLQFFSRYRSSKVLFREK--------KHLSRDLLERVV 256

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            ++PF  T+ Q+ ++ +I  D+S    M R+LQGDVGSGKTLVAL++    +EAG Q   
Sbjct: 257 LSLPFELTEDQKISVDEIFSDLSSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAF 316

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  +LA+QHY+ +     +  I V ++TG++ +  + +ALE I  G + +I+GTH++F
Sbjct: 317 MAPTDLLARQHYDNLSNILSSFNISVTLLTGSLKKKDKEQALESIKSGVSGLIVGTHSIF 376

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            +S ++ +L  VI+DEQH+FGV QR +L  K     +LLM+ATPIPR+  LT  GD+++S
Sbjct: 377 YESTEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDILLMSATPIPRSFALTLFGDLEVS 436

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I   P GR PI T +      D+V + L+  L +G + Y++ P I   ++   + V   
Sbjct: 437 LIKTLPKGRLPITTYLAKHGNEDKVYDFLRKELLKGHQVYFVYPLISSSEKFELKDVNNM 496

Query: 507 FNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +  L E F+  +  ++H ++    KE +M +F +    +L+AT+VIEVGID  +A+ +++
Sbjct: 497 YLKLKEVFSEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVV 556

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           E+AE FGL+ LHQ+RGR+GR    S   LLY  PL+     RL  +K   DGF IAEEDL
Sbjct: 557 EHAERFGLSTLHQIRGRIGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDL 616

Query: 626 KQRKEGEILGIKQSGMPKFLIAQ 648
           + R  G + G++Q+G  K  I+ 
Sbjct: 617 RLRGPGNLFGLEQAGYLKLKISN 639


>gi|225424226|ref|XP_002280664.1| PREDICTED: similar to ATP-dependent helicase [Vitis vinifera]
          Length = 1272

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 214/657 (32%), Positives = 332/657 (50%), Gaps = 95/657 (14%)

Query: 95   NDGTGEITLLF----FYRKTEMLKNVFF--------EGRKITVTGKIKKLKNRIIMVHPH 142
            ND  G+ T+      F+R T      F         EG  + V+GK++ ++ +      H
Sbjct: 612  NDSWGKKTIYLHLKKFFRGTRFTNVPFLRCLQEKHKEGDIVCVSGKVRTMRTK-----DH 666

Query: 143  YIFHNSQDVNFPLIE--------------AVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
            Y     ++ N  LIE              ++Y    GL+ +  + II  AL  LPV  + 
Sbjct: 667  Y---EMREYNLDLIEDDQDSSVCPKGRPYSIYPSKGGLNSNFLRDIISRALHSLPVNIDP 723

Query: 189  IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
            I KD+++     S+  A+  IH P   KD +    AR+RL +DE    Q+  L    Q  
Sbjct: 724  IPKDIIEDFGLLSLHSAYVGIHQP---KDLKEADLARKRLIFDEFFYLQLGRLF---QIL 777

Query: 249  KEIGIPINVEG-------------------KIAQKILRNIPFSPTKSQESAIKDILQDMS 289
            + +G  I  +G                    + +  L+ +P+S T SQ SA  +I+ D+ 
Sbjct: 778  EGLGTKIEKDGLLDKYRKPELNTVFVEEWSSLTKNFLKALPYSLTSSQLSAASEIIWDLK 837

Query: 290  QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            +   M R+LQGDVG GKT+VA +A    + +G QA  M P  +LA QHYE +    +N +
Sbjct: 838  RPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLALQHYEQLINLLENME 897

Query: 350  II-----VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                   + ++TG+ P    R   + + +G   ++IGTH+L  + +++  L + +VDEQH
Sbjct: 898  GAECKPSIALLTGSTPSKQSRMTHKGLQNGDISLVIGTHSLISEKVEFSALRIAVVDEQH 957

Query: 405  RFGVQQRLKLTQK-----------------------ATAPHVLLMTATPIPRTLVLTSLG 441
            RFGV QR +   K                         APH+L M+ATPIPRTL L   G
Sbjct: 958  RFGVIQRGRFNSKLYYNSISSRMAEASSDVLSEGDTRMAPHILAMSATPIPRTLALALYG 1017

Query: 442  DIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKE-S 498
            D+ +++IT+ P GR P++T  I       ++V + +   L  G K Y + P IE+ ++  
Sbjct: 1018 DMSLTQITDLPPGRTPVETYTIEGCDAGFEDVYQMMLDELEVGGKIYIVYPVIEQSEQLP 1077

Query: 499  NFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              R+      ++   F      ++HGRM   +K+  +  F++G   +L++T VIE+G+DV
Sbjct: 1078 QLRAASTDLETISSRFQGYKCGLLHGRMKSDEKDEALRRFRSGETNILLSTQVIEIGVDV 1137

Query: 558  VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
             DAS++++ NAE FG+AQLHQLRGRVGRG   S C+L+     + +   RL VL+N+ DG
Sbjct: 1138 PDASMMVVMNAERFGIAQLHQLRGRVGRGVRKSKCLLVSS---TASGLNRLKVLENSSDG 1194

Query: 618  FLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            F +A  DL  R  G++LG KQSG +P+F IA+ E+  ++L+ A   A  IL    DL
Sbjct: 1195 FYLANMDLLLRGPGDLLGKKQSGHLPEFPIARLEIDGNILQEAHLAALKILGTSHDL 1251


>gi|219685205|ref|ZP_03540025.1| ATP-dependent DNA helicase RecG [Borrelia garinii Far04]
 gi|219673301|gb|EED30320.1| ATP-dependent DNA helicase RecG [Borrelia garinii Far04]
          Length = 686

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 208/623 (33%), Positives = 333/623 (53%), Gaps = 34/623 (5%)

Query: 43  DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LND 96
           DL+ + P  + DR      P  S++    + T+   +  H  F    ++  K+    +ND
Sbjct: 34  DLIEFFPVKYEDRQNIQTFPDCSKVKSFDMTTVFTVVG-HKKFGDSSKKNLKLTARSIND 92

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---IFHNSQDVNF 153
              EI  L F R    L+NVF   +K  +  K        +    ++   +F +S +  F
Sbjct: 93  EPFEI--LLFNRA--FLENVFRIDKKFYIYSKFTYNDYSGLWSCSNFDSEVFTDSPE-RF 147

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNP 212
             I  VYSL  GL+       + EAL       +  I K L++K S  S++EA   IH P
Sbjct: 148 KKILPVYSLTEGLTSKKISLYVREALEYFFKFGQTDIPKFLIEKYSLLSLSEALKEIHFP 207

Query: 213 RKAKDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKIL 266
                 E    A++ L Y E+   Q       + +L R++         ++   + ++++
Sbjct: 208 ---SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKVLFREK--------KHLSRDLLERVV 256

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            ++PF  T+ Q+ ++ +I  D+S    M R+LQGDVGSGKTLVAL++    +EAG Q   
Sbjct: 257 SSLPFELTEDQKISVDEIFSDLSSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAF 316

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  +LA+QHY+ +     +  I V ++TG++ +  + +ALE I +G + +I+GTH++F
Sbjct: 317 MAPTDLLARQHYDNLSNILSSFNISVTLLTGSLKKKDKEQALESIKNGVSGLIVGTHSIF 376

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            +S ++ +L  VI+DEQH+FGV QR K   K     +LLM+ATPIPR+  LT  GD+++S
Sbjct: 377 YESTEFKRLAYVIIDEQHKFGVVQREKFKNKGEGVDILLMSATPIPRSFALTLFGDLEVS 436

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I   P GR PI T +      D+V + L+  L +G + Y++ P I   ++   + V   
Sbjct: 437 LIKTLPKGRLPITTYLAKHGNEDKVYDFLRKELLKGHQVYFVYPLISSSEKFELKDVNNM 496

Query: 507 FNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +  L E F+  +  ++H ++    KE +M +F +    +L+AT+VIEVGID  +A+ +++
Sbjct: 497 YLKLKEVFSEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVV 556

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           E+AE FGL+ LHQ+RGR+GR    S   LLY  PL+     RL  +K   DGF IAEEDL
Sbjct: 557 EHAERFGLSTLHQIRGRIGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDL 616

Query: 626 KQRKEGEILGIKQSGMPKFLIAQ 648
           + R  G + G++Q+G  K  I+ 
Sbjct: 617 RLRGPGNLFGLEQAGYLKLKISN 639


>gi|238063276|ref|ZP_04607985.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           sp. ATCC 39149]
 gi|237885087|gb|EEP73915.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           sp. ATCC 39149]
          Length = 735

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 366/709 (51%), Gaps = 69/709 (9%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           VG+K +  L+  ++   A      DL+++ P  + +R     I  +     VT+   + +
Sbjct: 17  VGEKTAKALAAHLDLHTAG-----DLIYHFPRRYDERGEHTDIRSLDVGEQVTVLAQVRR 71

Query: 79  HSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
                +++RR    ++ + D +G      F+      +     GR     GK+ + + + 
Sbjct: 72  TDVRPMRQRRGKLLEVTVGDDSGGTLTCTFFGNQAWRERELRPGRWGLFAGKVTEFRGKR 131

Query: 137 IMVHPHYIFHNSQDVN---------------FPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
            +  P Y+                        P+  A  ++PT + +    +++++  + 
Sbjct: 132 QLNGPEYVLLGEGGDGEAAANEEVEEFAGALIPVYPAAAAVPTWV-IARCVRVVLDTFT- 189

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P  P+     +   ++   I  A   IH P      E    AR RL +DE  A Q+ L+
Sbjct: 190 PPEDPQ--PATIRATRNLIGIGTALREIHRPSSK---EALYRARRRLKWDEAFAVQLTLV 244

Query: 242 LMRKQFKKEIGIPINVEGKIAQKIL----RNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
             RK   +    P       A  +L      +P+  T  Q +   +I  D++  + M R+
Sbjct: 245 -QRKH--RAAAWPARSRPPRAGALLDAFDARLPYELTGGQRAVGAEIAADLATAHPMHRL 301

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-----------KKYTQ 346
           LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LA QH+  I           +    
Sbjct: 302 LQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHHRGILDLLGPLARGGELGAA 361

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           +    VE++TG++  A RR+AL  +A G+A I++GTHAL  + + +  L LV+VDEQHRF
Sbjct: 362 DGATSVELVTGSLGAAARRRALAEVAAGRAGIVLGTHALLYEGVDFADLGLVVVDEQHRF 421

Query: 407 GVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           GV+QR  L  KA   PHVL+MTATPIPRT+ +T  GD+++S +++ P GR PI + ++P 
Sbjct: 422 GVEQRDALRSKADQPPHVLVMTATPIPRTVAMTVYGDLEVSTLSQLPQGRSPIASHVVPA 481

Query: 466 NR----IDEVIERLKVVLSEGKKAYWICPQIEE----------KKESNFR----SVVERF 507
                 +D    RL+  ++ G +AY +CP+I +          +++ N R    +V E  
Sbjct: 482 AEKPAFLDRAWRRLREEVAAGHQAYVVCPRIGDPGAGSEEEPPREDDNGRRPPLAVTEVA 541

Query: 508 NSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             L E       I I+HGR+   +K++VM +F +G   +L+ATTV+EVG++V +A+++I+
Sbjct: 542 PLLAEGPLHGLRIGILHGRLPADEKDAVMRAFADGELDVLVATTVVEVGVNVPNATVMIV 601

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            +A+ FG++QLHQLRGRVGRG     C+L+       ++  RL  + +T DGF +AE DL
Sbjct: 602 LDADRFGVSQLHQLRGRVGRGSAAGLCLLVTEAAEGSSARERLDAVASTTDGFKLAELDL 661

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDL 673
           +QR+EG++LG  QSG    L     L D+ L+  AR +A  ++ +DP+L
Sbjct: 662 EQRREGDVLGATQSGRRSHLRLLSLLRDTDLIRDARAEAIALVDEDPEL 710


>gi|308235871|ref|ZP_07666608.1| putative ATP-dependent DNA helicase RecG [Gardnerella vaginalis
           ATCC 14018]
 gi|311115033|ref|YP_003986254.1| DNA helicase RecG [Gardnerella vaginalis ATCC 14019]
 gi|310946527|gb|ADP39231.1| DNA helicase RecG [Gardnerella vaginalis ATCC 14019]
          Length = 805

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 231/752 (30%), Positives = 365/752 (48%), Gaps = 125/752 (16%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN--DGTGE 100
           D L Y+P    +   R  +S+I   + V  +  I   +  Q+  RR Y++ +N      +
Sbjct: 34  DALTYYPFRVTNPLKRAHLSQILPGQEVAFSATIQSINIVQMAARRGYRLEVNVAQDAAQ 93

Query: 101 ITLLFFYRKTEMLKNVFFE---GRKITVTGKIKKLKNRIIMVHPHYI------------- 144
             +++F +  + ++ V      G+ + V G   +   R+   HP  +             
Sbjct: 94  AQIVYFSKNRQYVQWVSGRIAVGQTVVVGGTSGEFNGRLQFTHPQILTVRAKSAESDDSA 153

Query: 145 ------FHNSQDVNFPLIE----------AVYSLPTGLSVD-----------LFKKIIVE 177
                   NS D +   +E           +Y   + +S +           LFK     
Sbjct: 154 YNTDVRVQNSDDFSVQSVEDGIEKLCAPQPIYHANSRISSEHIHETILGLLRLFKTCDSS 213

Query: 178 ---------ALSRLP-------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
                    A + +P       VLP+ + + +   ++    A AF  IHNP+   DFE  
Sbjct: 214 DFNVDTTGVADTNVPDTNVLSDVLPDVLPQFVTNSRNLMHRAAAFESIHNPQNKNDFE-- 271

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
             A   + Y+E    QIA+L  RK+  +          ++ +    ++PF  T+ Q++ I
Sbjct: 272 -NAIHTMRYEEAFISQIAVLQSRKKSGENKAYTCE-NSELRKHFEESLPFELTEGQKNVI 329

Query: 282 KDILQDMSQKNR---------MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            +I  DM  +++         M R+LQG+VGSGKT+VA+ AM  AV +G QAV++AP  +
Sbjct: 330 SEITADMQGESQATEESPLKPMRRLLQGEVGSGKTIVAMSAMLQAVGSGHQAVLIAPTQV 389

Query: 333 LAQQHYEFIKKYTQNTQIIVEI--ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
           LA QH   +++  +   I VEI  ITG M  A RR AL ++A G+  II+ THA F  S 
Sbjct: 390 LASQHATNLQQMIERAGINVEITLITGGMKLASRRSALAKVASGEPAIIVATHAAFSASF 449

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISK 447
           +   L LVI+DEQHRFGV+QR  L +K +    PH+L+MTATPIPR+  +T  GD+D S 
Sbjct: 450 KPTNLALVIIDEQHRFGVEQRDTLLRKISGNAVPHLLVMTATPIPRSAAMTWFGDLDASY 509

Query: 448 ITEKPAGRKPIKTVII---PINRIDEVIERLKVVLSEGKKAYWICP-------------- 490
           +TE P GRKPI+T +I     +++  +   ++  +  G++AY +C               
Sbjct: 510 LTELPGGRKPIRTFVINEEDSHKMASMFYHIRSRIDAGERAYVVCARIDSEDSEENNDNT 569

Query: 491 ----------------------------QIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
                                       QI +++      + +R  +L +      A + 
Sbjct: 570 YNTYNNADAIYQENQDSYTLNSQNTQNTQIAQREVHTVLQISKRLQNLPQFKGVEFAQLT 629

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GR SD +K  +M  F +G  ++L++TTVIEVG+DV  AS I+I +A+ FGLAQLHQLRGR
Sbjct: 630 GRTSDEEKREIMHKFDSGQVQILVSTTVIEVGVDVAKASCIVIFDADRFGLAQLHQLRGR 689

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGR    S   L+ + P ++ +  RL V++N+ DG +IA++DL+ R  G++LG  QSG  
Sbjct: 690 VGRSGTQSWAFLVSNAPNNQLAAERLQVVENSLDGAIIAQKDLELRNVGDVLGDSQSGGK 749

Query: 643 KFLIAQPELHDS-LLEIARKDAKHILTQDPDL 673
             L     + D+ ++  AR+DA  +L  DP L
Sbjct: 750 SSLKLLRVVKDAKIIAEAREDANTLLEHDPTL 781


>gi|289428698|ref|ZP_06430381.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           J165]
 gi|289158096|gb|EFD06316.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           J165]
 gi|313773559|gb|EFS39525.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL074PA1]
 gi|313807917|gb|EFS46398.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL087PA2]
 gi|313811612|gb|EFS49326.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL083PA1]
 gi|313819702|gb|EFS57416.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL046PA2]
 gi|313825899|gb|EFS63613.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL063PA1]
 gi|313831354|gb|EFS69068.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL007PA1]
 gi|313834965|gb|EFS72679.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL056PA1]
 gi|314962050|gb|EFT06151.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL002PA2]
 gi|314974229|gb|EFT18325.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL053PA1]
 gi|314976660|gb|EFT20755.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL045PA1]
 gi|314978855|gb|EFT22949.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL072PA2]
 gi|314984468|gb|EFT28560.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL005PA1]
 gi|314986486|gb|EFT30578.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL005PA2]
 gi|314990845|gb|EFT34936.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL005PA3]
 gi|315081290|gb|EFT53266.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL078PA1]
 gi|315087173|gb|EFT59149.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL002PA3]
 gi|315089344|gb|EFT61320.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL072PA1]
 gi|327328369|gb|EGE70131.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes HL096PA2]
 gi|327444153|gb|EGE90807.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL043PA2]
 gi|327444966|gb|EGE91620.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL043PA1]
 gi|327446450|gb|EGE93104.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL013PA2]
 gi|328752205|gb|EGF65821.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL020PA1]
 gi|328760122|gb|EGF73701.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes HL099PA1]
 gi|332675894|gb|AEE72710.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes 266]
          Length = 749

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 206/640 (32%), Positives = 328/640 (51%), Gaps = 60/640 (9%)

Query: 85  QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           ++RRP    +++L+DG   + + FF +       + +F         GK+ + +    +V
Sbjct: 95  RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154

Query: 140 HPHYIF--HNSQDVN-----------------FPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           HP ++    N + V                    L +    L T   +   + +++E+  
Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYQQTSKLRT-WEIASVESMLLESTP 213

Query: 181 RL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            L   LPEW    L Q+   PS+ EA++ IH P    + +  +   ERL ++E +A Q+ 
Sbjct: 214 ELEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVT 266

Query: 240 LLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           + + R+  ++ +  +    +G +       +PF+PT  Q+   + I  D+S    M R+L
Sbjct: 267 MAVRRRSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLL 326

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN----------- 347
           QG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  I     +           
Sbjct: 327 QGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGGGLDAPE 386

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
               V ++TG+M  A  R AL  IA G A II+GTH+L    + Y  + LV+VDEQHRFG
Sbjct: 387 ISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFG 446

Query: 408 VQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI- 465
           V+QR  LT    A PH L++TATPIPRT+ +T  GD+++S + E P GR  ++T ++ + 
Sbjct: 447 VEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLP 506

Query: 466 ---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS-- 517
              + +    +R++     G + + +CP+I      +    R        L     +   
Sbjct: 507 AHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRRPAAAVEELAPQLATGPL 566

Query: 518 ----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+DV +A++++I +A+ FG+
Sbjct: 567 AGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGV 626

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           +QLHQLRGR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR EG +
Sbjct: 627 SQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNV 686

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672
           LG  Q+G    L     L  + +  A KD A+  + + PD
Sbjct: 687 LGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726


>gi|327329764|gb|EGE71520.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes HL096PA3]
          Length = 749

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 206/640 (32%), Positives = 328/640 (51%), Gaps = 60/640 (9%)

Query: 85  QKRRPYK---ILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           ++RRP +   ++L+DG   + + FF +       + +F         GK+ + +    +V
Sbjct: 95  RERRPSQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154

Query: 140 HPHYIF--HNSQDVN-----------------FPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           HP ++    N + V                    L +    L T   +   + +++E+  
Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYQQTSKLRT-WEIASVESMLLESTP 213

Query: 181 RL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            L   LPEW    L Q+   PS+ EA++ IH P    + +  +   ERL ++E +A Q+ 
Sbjct: 214 ELEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVT 266

Query: 240 LLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           + + R+  ++ +  +    +G +       +PF+PT  Q+   + I  D+S    M R+L
Sbjct: 267 MAVRRRSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLL 326

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN----------- 347
           QG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  I     +           
Sbjct: 327 QGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGGGLDAPE 386

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
               V ++TG+M  A  R AL  IA G A II+GTH+L    + Y  + LV+VDEQHRFG
Sbjct: 387 ISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFG 446

Query: 408 VQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI- 465
           V+QR  LT    A PH L++TATPIPRT+ +T  GD+++S + E P GR  ++T ++ + 
Sbjct: 447 VEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLP 506

Query: 466 ---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS-- 517
              + +    +R++     G + + +CP+I      +    R        L     +   
Sbjct: 507 AHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRRPAAAVEELAPQLATGPL 566

Query: 518 ----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+DV +A++++I +A+ FG+
Sbjct: 567 AGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGV 626

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           +QLHQLRGR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR EG +
Sbjct: 627 SQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNV 686

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672
           LG  Q+G    L     L  + +  A KD A+  + + PD
Sbjct: 687 LGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726


>gi|315095369|gb|EFT67345.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL038PA1]
          Length = 749

 Score =  318 bits (814), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 206/640 (32%), Positives = 328/640 (51%), Gaps = 60/640 (9%)

Query: 85  QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           ++RRP    +++L+DG   + + FF +       + +F         GK+ + +    +V
Sbjct: 95  RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154

Query: 140 HPHYIF--HNSQDVN-----------------FPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           HP ++    N + V                    L +    L T   +   + +++E+  
Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQGQRHGLLGLYQQTSKLRT-WEIASVESMLLESTP 213

Query: 181 RL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            L   LPEW    L Q+   PS+ EA++ IH P    + +  +   ERL ++E +A Q+ 
Sbjct: 214 ELEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVT 266

Query: 240 LLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           + + R+  ++ +  +    +G +       +PF+PT  Q+   + I  D+S    M R+L
Sbjct: 267 MAVRRRSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLL 326

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN----------- 347
           QG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  I     +           
Sbjct: 327 QGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGGGLDAPE 386

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
               V ++TG+M  A  R AL  IA G A II+GTH+L    + Y  + LV+VDEQHRFG
Sbjct: 387 ISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFG 446

Query: 408 VQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI- 465
           V+QR  LT    A PH L++TATPIPRT+ +T  GD+++S + E P GR  ++T ++ + 
Sbjct: 447 VEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLP 506

Query: 466 ---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS-- 517
              + +    +R++     G + + +CP+I      +    R        L     +   
Sbjct: 507 AHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRRPAAAVEELAPQLATGPL 566

Query: 518 ----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+DV +A++++I +A+ FG+
Sbjct: 567 AGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGV 626

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           +QLHQLRGR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR EG +
Sbjct: 627 SQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNV 686

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672
           LG  Q+G    L     L  + +  A KD A+  + + PD
Sbjct: 687 LGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726


>gi|313822191|gb|EFS59905.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL036PA1]
 gi|313823574|gb|EFS61288.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL036PA2]
 gi|314924585|gb|EFS88416.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL036PA3]
          Length = 749

 Score =  317 bits (813), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 206/640 (32%), Positives = 328/640 (51%), Gaps = 60/640 (9%)

Query: 85  QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           ++RRP    +++L+DG   + + FF +       + +F         GK+ + +    +V
Sbjct: 95  RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154

Query: 140 HPHYIF--HNSQDVN-----------------FPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           HP ++    N + V                    L +    L T   +   + +++E+  
Sbjct: 155 HPDFVMIDRNGKIVAGREEGKVMAAQVQRHGLLGLYQQTSKLRT-WEIASVESMLLESTP 213

Query: 181 RL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            L   LPEW    L Q+   PS+ EA++ IH P    + +  +   ERL ++E +A Q+ 
Sbjct: 214 ELEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVT 266

Query: 240 LLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           + + R+  ++ +  +    +G +       +PF+PT  Q+   + I  D+S    M R+L
Sbjct: 267 MAVRRRSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLL 326

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN----------- 347
           QG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  I     +           
Sbjct: 327 QGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGGGLDAPE 386

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
               V ++TG+M  A  R AL  IA G A II+GTH+L    + Y  + LV+VDEQHRFG
Sbjct: 387 ISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFG 446

Query: 408 VQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI- 465
           V+QR  LT    A PH L++TATPIPRT+ +T  GD+++S + E P GR  ++T ++ + 
Sbjct: 447 VEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLP 506

Query: 466 ---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS-- 517
              + +    +R++     G + + +CP+I      +    R        L     +   
Sbjct: 507 AHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRRPAAAVEELAPQLATGPL 566

Query: 518 ----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+DV +A++++I +A+ FG+
Sbjct: 567 AGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGV 626

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           +QLHQLRGR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR EG +
Sbjct: 627 SQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNV 686

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672
           LG  Q+G    L     L  + +  A KD A+  + + PD
Sbjct: 687 LGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726


>gi|219684327|ref|ZP_03539271.1| ATP-dependent DNA helicase RecG [Borrelia garinii PBr]
 gi|219672316|gb|EED29369.1| ATP-dependent DNA helicase RecG [Borrelia garinii PBr]
          Length = 686

 Score =  317 bits (813), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 208/623 (33%), Positives = 334/623 (53%), Gaps = 34/623 (5%)

Query: 43  DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LND 96
           DL+ + P  + DR      P  S++    ++T+   +  H  F    ++  K+    +ND
Sbjct: 34  DLIEFFPVKYEDRQNIQTFPDFSKVKSFDMMTVFTVVG-HKKFGDSSKKNLKLTARSIND 92

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---IFHNSQDVNF 153
              EI  L F R    L+NVF   +K  +  K        +    ++   +F +S +  F
Sbjct: 93  EPFEI--LLFNRA--FLENVFRIDKKFYIYSKFTYNDYSGLWSCSNFDSEVFTDSPE-RF 147

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNP 212
             I  VYSL  GL+       + EAL       +  I K L++K S  S++EA   IH P
Sbjct: 148 KKILPVYSLTEGLTSKKISLYVREALEYFFKFGQTDIPKFLIEKYSLLSLSEALKEIHFP 207

Query: 213 RKAKDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKIL 266
                 E    A++ L Y E+   Q       + +L R++         ++   + ++++
Sbjct: 208 ---SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKVLFREK--------KHLSRDLLERVV 256

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            ++PF  T+ Q+ ++ +I  D+S    M R+LQGDVGSGKTLVAL++    +EAG Q   
Sbjct: 257 SSLPFELTEDQKISVDEIFSDLSSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAF 316

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  +LA+QHY+ +     +  I V ++TG++ +  + +ALE I  G + +I+GTH++F
Sbjct: 317 MAPTDLLARQHYDNLSNILSSFNIPVTLLTGSLKKKDKEQALESIKSGVSGLIVGTHSIF 376

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            +S ++ +L  VI+DEQH+FGV QR +L  K     +LLM+ATPIPR+  LT  GD+++S
Sbjct: 377 YESTEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDILLMSATPIPRSFALTLFGDLEVS 436

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I   P GR PI T +      D+V + L+  L +G + Y++ P I   ++   + V   
Sbjct: 437 LIKTLPKGRLPITTYLAKHGNEDKVYDFLRKELLKGHQVYFVYPLISSSEKFELKDVNNM 496

Query: 507 FNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +  L E F+  +  ++H ++    KE +M +F +    +L+AT+VIEVGID  +A+ +++
Sbjct: 497 YLKLKEVFSEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVV 556

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           E+AE FGL+ LHQ+RGR+GR    S   LLY  PL+     RL  +K   DGF IAEEDL
Sbjct: 557 EHAERFGLSTLHQIRGRIGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDL 616

Query: 626 KQRKEGEILGIKQSGMPKFLIAQ 648
           + R  G + G++Q+G  K  I+ 
Sbjct: 617 RLRGPGNLFGLEQAGYLKLKISN 639


>gi|255326571|ref|ZP_05367648.1| ATP-dependent DNA helicase RecG [Rothia mucilaginosa ATCC 25296]
 gi|255296311|gb|EET75651.1| ATP-dependent DNA helicase RecG [Rothia mucilaginosa ATCC 25296]
          Length = 1171

 Score =  317 bits (813), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 210/668 (31%), Positives = 332/668 (49%), Gaps = 88/668 (13%)

Query: 89   PYKILLNDGT---GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145
            P   + N G     ++ L FF   T   +    EG  +  +G++   +    + +PHY  
Sbjct: 484  PAPSMTNPGALIGSQMKLSFFNAWTAARE--IREGETMMFSGRVGIYRGEYTLTNPHYAL 541

Query: 146  HNSQDVNFPLIEA------VYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKK 197
             +       + +A      VY  P  L  D     + + L ++P+  L + +   + + +
Sbjct: 542  LSKDASGADVTDAATAPVPVYRAPVKLPTDRISGYMAQLLEKVPLKELEDPVPYTIRRAR 601

Query: 198  SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-IN 256
              PS+   +  +H P    +  W + A+ ++ Y E    Q AL  +       +  P   
Sbjct: 602  KVPSLEWTYRALHTPDS--EDTWRA-AQAQMRYREAFVLQSALARLHSVRAAHLTQPRPA 658

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            VE  +A ++L+ +P+  T+ Q+    +I  D+S ++ M R+LQGDVGSGKT+VAL AM  
Sbjct: 659  VESGLADRLLQVLPYELTEGQQKVGAEIAADLSSESPMNRLLQGDVGSGKTVVALRAMLQ 718

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFI------------------------KKYTQNTQIIV 352
              +AGGQ+ ++AP  +LA+QH   +                            +  ++ V
Sbjct: 719  VADAGGQSAMLAPTEVLAEQHLRSVLDILGDMAAPEDSDADDSAEGIPSGSGEEPDRVRV 778

Query: 353  EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             ++T +M    +RK L+ +A G A I+IGTHAL  D + ++ L LV+VDEQHRFGV+QR 
Sbjct: 779  RLLTASMGTRAKRKVLQELADGTAQIVIGTHALLSDEVSFHDLGLVVVDEQHRFGVEQRD 838

Query: 413  KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---- 467
             L     A PH L+MTATPIPRT+ +T  GD+D+S +   PAGR+ I T ++P+      
Sbjct: 839  GLRGTDGALPHRLVMTATPIPRTVAMTVFGDLDVSVLDTLPAGRQKISTHVVPLAEKPAW 898

Query: 468  IDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEHFTSS 517
               +  R +  +  G + Y + P+I E  +S          +  +     NS   +F  S
Sbjct: 899  ASRLWRRAREEIDAGHQVYVVVPKIGEDGDSLEEGAAFFGASSLNGAGAGNSAQGYFGQS 958

Query: 518  -------------------------------IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                                           I  +HGRM   +K SVM +F+ G   LLI
Sbjct: 959  GSASSDGKVQLTSVASMYSYLSAEDALVGVRIGTLHGRMDPAEKTSVMTAFERGEIDLLI 1018

Query: 547  ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
            +TTVIEVG++V +A+++II +A+ FG++ LHQLRGRVGRG    +C+L+        S  
Sbjct: 1019 STTVIEVGVNVPNATLMIIMDADRFGISGLHQLRGRVGRGGYAGTCLLVTRQEEGGVSRE 1078

Query: 607  RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKH 665
            RL  + +T DGF ++  DL QR+EG+ILG  QSG    L     L D+ ++E AR+DA+ 
Sbjct: 1079 RLDAVASTTDGFELSRIDLAQRREGDILGAAQSGSKSTLRFLRALADADIIERAREDARS 1138

Query: 666  ILTQDPDL 673
            ++ +DP L
Sbjct: 1139 VVEKDPTL 1146


>gi|295131015|ref|YP_003581678.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes SK137]
 gi|291375406|gb|ADD99260.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes SK137]
          Length = 739

 Score =  317 bits (812), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 206/640 (32%), Positives = 328/640 (51%), Gaps = 60/640 (9%)

Query: 85  QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           ++RRP    +++L+DG   + + FF +       + +F         GK+ + +    +V
Sbjct: 85  RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 144

Query: 140 HPHYIF--HNSQDVN-----------------FPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           HP ++    N + V                    L +    L T   +   + +++E+  
Sbjct: 145 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYQQTSKLRT-WEIASVESMLLESTP 203

Query: 181 RL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            L   LPEW    L Q+   PS+ EA++ IH P    + +  +   ERL ++E +A Q+ 
Sbjct: 204 ELEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVT 256

Query: 240 LLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           + + R+  ++ +  +    +G +       +PF+PT  Q+   + I  D+S    M R+L
Sbjct: 257 MAVRRRSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLL 316

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN----------- 347
           QG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  I     +           
Sbjct: 317 QGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGGGLDAPE 376

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
               V ++TG+M  A  R AL  IA G A II+GTH+L    + Y  + LV+VDEQHRFG
Sbjct: 377 ISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFG 436

Query: 408 VQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI- 465
           V+QR  LT    A PH L++TATPIPRT+ +T  GD+++S + E P GR  ++T ++ + 
Sbjct: 437 VEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLP 496

Query: 466 ---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS-- 517
              + +    +R++     G + + +CP+I      +    R        L     +   
Sbjct: 497 AHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRRPAAAVEELAPQLATGPL 556

Query: 518 ----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+DV +A++++I +A+ FG+
Sbjct: 557 AGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGV 616

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           +QLHQLRGR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR EG +
Sbjct: 617 SQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNV 676

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672
           LG  Q+G    L     L  + +  A KD A+  + + PD
Sbjct: 677 LGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 716


>gi|297242906|ref|ZP_06926844.1| RecG-like helicase [Gardnerella vaginalis AMD]
 gi|296889117|gb|EFH27851.1| RecG-like helicase [Gardnerella vaginalis AMD]
          Length = 812

 Score =  317 bits (812), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 197/559 (35%), Positives = 300/559 (53%), Gaps = 71/559 (12%)

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           +P    + +L+K++  + A A   IHNP+   +F     A + L Y+E    Q+A+L  R
Sbjct: 237 IPNITPESVLKKRNLMTRASAIYSIHNPQSVDEF---YKAVDSLRYEEAFISQVAVLRSR 293

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +  K       N    I  + + ++PF  T  Q+  I +I++DM +++ M R+LQG+VGS
Sbjct: 294 EDSKDNQAKSCN-NSLIRNEFVESLPFELTAGQKDVIDEIVRDMRERHPMRRLLQGEVGS 352

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT--QNTQIIVEIITGNMPQA 362
           GKT+VAL AM  AV +G QAV++AP  +LA QH E +++     N ++ V ++TG M  A
Sbjct: 353 GKTVVALAAMLEAVGSGYQAVLVAPTQVLASQHAENLRQMIARANLKVPVIVVTGGMRLA 412

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-------- 414
            RR+AL  +A G+  +I+ THA F  + +   L LVI+DEQHRFGV+QR  L        
Sbjct: 413 DRRRALASVASGEPSLIVATHAAFSSTFKPTNLALVIIDEQHRFGVEQRDVLLRKMSVDP 472

Query: 415 ---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII---PINRI 468
               +K+  PH+L+MTATPIPR+  +T  GD+D S +TE P GRKPI+T ++     N +
Sbjct: 473 HDSAEKSFTPHLLVMTATPIPRSAAMTWFGDLDASYLTELPGGRKPIRTFVVQESDANTM 532

Query: 469 DEVIERLKVVLSEGKKAYWICPQI------------------------------------ 492
             +   ++  +  G++AY +C  I                                    
Sbjct: 533 ARMFAHIRARIDAGERAYVVCAHIDDDFNEDSGRDSASGSASGSARDFDSDESEGFEDVS 592

Query: 493 --------EEKKESNFR------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
                   EE    + R       +++R ++L +    + A + GR  D  K   M+ F 
Sbjct: 593 QSVQSNQSEENSADSLRKLHTVNGILKRLSALPQFKGVTFAKLTGRDDDATKRETMEHFA 652

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++L+ATTVIEVG+DV  AS I+I +A+ FGLAQLHQLRGRVGRG   S   L+   
Sbjct: 653 RGDVQVLVATTVIEVGVDVPQASCIVIFDADRFGLAQLHQLRGRVGRGGTNSWAFLVAQT 712

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLE 657
                +  RL V++N+ DG +IA++DL+ R  G++LG KQSG    L     + D+ ++ 
Sbjct: 713 EDGSLAQERLQVVENSLDGAVIAKKDLELRNVGDVLGDKQSGGRSSLKILRVVKDAKIIA 772

Query: 658 IARKDAKHILTQDPDLTSV 676
           +AR+DA   L +D  L S+
Sbjct: 773 MAREDALETLQKDAHLVSL 791


>gi|327334282|gb|EGE75996.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes HL097PA1]
          Length = 749

 Score =  317 bits (812), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 204/639 (31%), Positives = 330/639 (51%), Gaps = 58/639 (9%)

Query: 85  QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           ++RRP    +++L+DG   + + FF +       + +F         GK+ + +    +V
Sbjct: 95  RERRPRQRLEVMLSDGKACLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154

Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181
           HP ++  +               +  V    +  +Y   + L    +   + +++E+   
Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           L   LPEW    L Q+   PS+ EA++ IH P    + +  +   ERL ++E +A Q+ +
Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 267

Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            + R+  ++ +  +    +G++       +PF+PT  Q+   + I  D+S    M R+LQ
Sbjct: 268 AVRRRSAERHDAPVCSRRDGELLAAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 327

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348
           G+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  I     +            
Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGGGLDAPEI 387

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              V ++TG+M  A  R AL  IA G A II+GTH+L    + Y  + LV+VDEQHRFGV
Sbjct: 388 STGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447

Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465
           +QR  LT    A PH L++TATPIPRT+ +T  GD+++S + E P GR  ++T ++ +  
Sbjct: 448 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507

Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517
             + +    +R++     G + + +CP+I      +    R        L     +    
Sbjct: 508 HGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRRPAAAVEELAPQLATGPLA 567

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+DV +A++++I +A+ FG++
Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR EG +L
Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672
           G  Q+G    L     L  + +  A KD A+  + + PD
Sbjct: 688 GSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726


>gi|283782816|ref|YP_003373570.1| putative ATP-dependent DNA helicase RecG [Gardnerella vaginalis
           409-05]
 gi|283441748|gb|ADB14214.1| putative ATP-dependent DNA helicase RecG [Gardnerella vaginalis
           409-05]
          Length = 792

 Score =  317 bits (811), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 201/579 (34%), Positives = 303/579 (52%), Gaps = 77/579 (13%)

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           +P    + +L+K++  + A A   IHNP+   +F     A + L Y+E    Q+A+L  R
Sbjct: 221 IPNITPESVLKKRNLMTRASAIYSIHNPQSVDEF---YKAVDSLRYEEAFISQVAVLRSR 277

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +  K       N    I  + + ++PF  T  Q+  I +I++DM + + M R+LQG+VGS
Sbjct: 278 EDSKDNQAKSCN-NSLIRNEFVESLPFELTAGQKDVIDEIVRDMREHHPMRRLLQGEVGS 336

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT--QNTQIIVEIITGNMPQA 362
           GKT+VAL AM  AV +G QAV++AP  +LA QH E +++     N ++ V ++TG M  A
Sbjct: 337 GKTVVALAAMLEAVGSGYQAVLVAPTQVLASQHAENLRQMITRANLKVPVIVVTGGMRLA 396

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-------- 414
            RR+AL  +A G+  +I+ THA F  + +   L LVI+DEQHRFGV+QR  L        
Sbjct: 397 DRRRALASVASGEPSLIVATHAAFSSTFKPTNLALVIIDEQHRFGVEQRDVLLRKMSVDS 456

Query: 415 ---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII---PINRI 468
               +K+  PH+L+MTATPIPR+  +T  GD+D S +TE P GRKPI+T ++     N +
Sbjct: 457 HNSAEKSFTPHLLVMTATPIPRSAAMTWFGDLDASYLTELPGGRKPIRTFVVQESDANTM 516

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEK--------KESNF-------------------- 500
             +   ++  +  G++AY +C  I++           SNF                    
Sbjct: 517 ARMFAHIRARIDAGERAYVVCAHIDDDFNEDSGSASASNFGRDFDSDESEAFEDVSQSVQ 576

Query: 501 ------------------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                               +++R ++L +    + A + GR  D  K   M+ F  G  
Sbjct: 577 SNQSEENNADSLRKLHTVNGILKRLSALPQFKGVTFAKLTGRDDDATKRETMERFARGDV 636

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+ATTVIEVG+DV  AS I+I +A+ FGLAQLHQLRGRVGRG   S   L+       
Sbjct: 637 QVLVATTVIEVGVDVPQASCIVIFDADRFGLAQLHQLRGRVGRGGTNSWAFLVAQTEDGS 696

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARK 661
            +  RL V++N+ DG +IA++DL+ R  G++LG KQSG    L     + D  ++ +AR+
Sbjct: 697 LAQERLQVVENSLDGAVIAKKDLELRNVGDVLGDKQSGGRSSLKILRVVKDVKIIAMARE 756

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           DA   L +D  L          +L  Y       F R G
Sbjct: 757 DALETLQKDTHL----------VLLPYLAGAVLDFTRGG 785


>gi|50842945|ref|YP_056172.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes KPA171202]
 gi|50840547|gb|AAT83214.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes KPA171202]
 gi|315106713|gb|EFT78689.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL030PA1]
          Length = 749

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 204/639 (31%), Positives = 329/639 (51%), Gaps = 58/639 (9%)

Query: 85  QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           ++RRP    +++L+DG   + + FF +       + +F         GK+ + +    +V
Sbjct: 95  RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154

Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181
           HP ++  +               +  V    +  +Y   + L    +   + +++E+   
Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           L   LPEW    L Q+   PS+ EA++ IH P    + +  +   ERL ++E +A Q+ +
Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 267

Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            + R+  ++ +  +    +G +       +PF+PT  Q+   + I  D+S    M R+LQ
Sbjct: 268 AVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 327

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348
           G+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  I     +            
Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGEGLDAPEI 387

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              V ++TG+M  A  R AL  IA G A II+GTH+L    + Y  + LV+VDEQHRFGV
Sbjct: 388 STGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447

Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465
           +QR  LT    A PH L++TATPIPRT+ +T  GD+++S + E P GR  ++T ++ +  
Sbjct: 448 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507

Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517
             + +    +R++     G + + +CP+I      +    R        L     +    
Sbjct: 508 HGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 567

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+DV +A++++I +A+ FG++
Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR EG +L
Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672
           G  Q+G    L     L  + +  A KD A+  + + PD
Sbjct: 688 GSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726


>gi|332670950|ref|YP_004453958.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332339988|gb|AEE46571.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 750

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 346/709 (48%), Gaps = 82/709 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYK--ILLNDGTGE 100
           DLL ++P  + D      I+ +     VT+   + Q    + +     +  + + DG   
Sbjct: 47  DLLRHYPFRYADPGTLTDIASLRVGDTVTVVADVRQAVVRRARSTNAARLEVQITDGRSA 106

Query: 101 ITLLFF--YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD-------- 150
           + L+FF   R  E L      GR+   TG+I      + + HP Y   +  D        
Sbjct: 107 LQLIFFGGARHHERL---LVPGRRGLFTGQISAFGGHLQLAHPTYEMFDGDDEGERVAVE 163

Query: 151 -VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-------PVLPEWIEKDLLQKKSFPSI 202
              +P    VY    GL        +  AL  L       PV P      L ++ +   +
Sbjct: 164 RATWP--RPVYRAGAGLDTTKIAAAVRTALGTLRDEDVVDPVPPA-----LREQHALADL 216

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
                 +H P    D+       +RL Y+E    Q  L   R +   E          +A
Sbjct: 217 HRTLRDVHEPHTDDDWRRAR---DRLRYEEAFVLQAELARRRARAAAEP---ATARPPVA 270

Query: 263 QKILR----NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             +L      +PF+ T  Q    + I  ++++   M R+LQG+VGSGKTLVAL AM   V
Sbjct: 271 DGVLAAFDARLPFTLTAGQREVGETIAAELARPVPMQRLLQGEVGSGKTLVALRAMLQVV 330

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------TQIIVEIITGNMPQAHRRKA 367
           +AGGQA ++AP  +LA QH   ++    +               V ++TG+ P A R+ A
Sbjct: 331 DAGGQAALLAPTEVLAAQHARSLRALLGDLAEGGMLGGAPDATRVALLTGSQPAAARKAA 390

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLM 426
           L   A G A I++GTHAL   ++Q+  L LV+VDEQH+FGV+QR  L  K AT+PH+L+M
Sbjct: 391 LLDAASGAAGIVVGTHALLSATVQFADLGLVVVDEQHKFGVEQRDTLRAKAATSPHLLVM 450

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGK 483
           TATPIPRT+ +T  GD++ S + E PAGR  + T ++P +    +     R++  +++G 
Sbjct: 451 TATPIPRTVAMTVFGDLETSVLREVPAGRSGVTTHVVPADNPVWMSRTWARVREEVAQGG 510

Query: 484 KAYWICPQIEEKKESN---------------------FRSVVERFNSLHEHFTS---SIA 519
           +AY +CP+I+   E                        R+V++    L         ++ 
Sbjct: 511 RAYVVCPRIDGDDERGADDVDLVADDVEVADAPARRPLRAVLDVAAELAAEPALEGVAVG 570

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           ++HGRM+  DK+  +  F +G   +L++TTV+EVG+DV +A+ +++ +A+ FG++QLHQL
Sbjct: 571 VLHGRMTPEDKDRALADFASGAVPVLVSTTVVEVGVDVPEATAMVVLDADRFGVSQLHQL 630

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           RGR+GRG     C+L+        +  R+  L  T DGF +A  DL+QR EG++LG  Q 
Sbjct: 631 RGRIGRGSAPGVCLLVSTAEPGTPAAERVDTLARTSDGFALASFDLEQRGEGDVLGASQW 690

Query: 640 GMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTSVR--GQSIRILL 685
           G    L + +      L+E AR DA+  + QDP+LTS    G +IR LL
Sbjct: 691 GGSSSLRLLRVTRDGDLIERARDDARAFVEQDPELTSWPPLGDAIRALL 739


>gi|311113805|ref|YP_003985027.1| ATP-dependent DNA helicase [Rothia dentocariosa ATCC 17931]
 gi|310945299|gb|ADP41593.1| ATP-dependent DNA helicase [Rothia dentocariosa ATCC 17931]
          Length = 1119

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 212/652 (32%), Positives = 341/652 (52%), Gaps = 84/652 (12%)

Query: 97   GTGEI----TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDV 151
            GTG +     L FF   T   +     G  +  +GK+   +    + +PHY +  +  + 
Sbjct: 452  GTGRVGSTMKLSFFNAWTAARE--IHAGETMMFSGKVGIYRGEYTLTNPHYALLSDDGNA 509

Query: 152  NFP-LIEA---VYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEA 205
            N P   EA   VY  P  L  D     I + +  +P+  L + I   + + +  PS+   
Sbjct: 510  NTPERAEAPIPVYRAPVKLPTDRIATAIAQLIESVPLKELEDPIPYKIRRARKVPSLEWT 569

Query: 206  FNIIHNPRKAKDFEWTSPARERLAYDE--LLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263
            +  +H P    +  W + A+ ++ Y E  +L   +A L   +     +  P   +G  A 
Sbjct: 570  YRALHTPDS--EDTWRA-AQAQMRYREAFVLQSALARLHAARAAHATVARPALPDG-AAD 625

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
             +L  +P+  T+ Q+   K+I +D++  + M R+LQGDVGSGKT+VAL AM    ++GGQ
Sbjct: 626  ALLNVLPYELTEGQQRVGKEISRDLASPSPMNRLLQGDVGSGKTVVALRAMLQVADSGGQ 685

Query: 324  AVIMAPIGILAQQHY-------------EFIKKYT------QNTQ--------IIVEIIT 356
            + ++AP  +LA+QH+             E I  Y       QN +        + V +++
Sbjct: 686  SAMLAPTEVLAEQHFRSILDILGDLADTEGIPGYETTLFRPQNQKESKKPAHRVRVRLLS 745

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-T 415
             +MP AH+R  L  IA G A ++IGTHAL  D++ +  L +V+VDEQHRFGV+QR  L  
Sbjct: 746  ASMPSAHKRAVLAEIADGTADVVIGTHALLSDTVTFRDLGMVVVDEQHRFGVEQRDSLRG 805

Query: 416  QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEV 471
                 PH L+MTATPIPRT+ +T  GD+D+S + + PAGR+   T ++P+       D +
Sbjct: 806  NNGELPHRLVMTATPIPRTVAMTVFGDLDVSVLDQLPAGRQQTATHVVPLAEKPTWADRL 865

Query: 472  IERLKVVLSEGKKAYWICPQIEEKKE-------------------SNFRSVVERFNSLHE 512
              R +  +  G + Y + P+I +  E                   S+ ++ +    ++  
Sbjct: 866  WTRAREEIDAGHQVYVVVPKIGDDDEELEEGQQLFGDAGREGSQSSDGKTRLTSVTAMTA 925

Query: 513  HFT-------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            +         + IA +HGRM   +K +VM +F+ G   +L++TTVIEVG++V +A++++I
Sbjct: 926  YLKQNPALTGTRIASLHGRMDPEEKTAVMTAFERGEIDILVSTTVIEVGVNVPNATLMMI 985

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
             +A+ FG++ LHQLRGRVGRG    +C+L+        S  RL  +  T DGF +++ DL
Sbjct: 986  MDADRFGISGLHQLRGRVGRGGFAGTCLLVTRQQAGGVSRERLDAVAATTDGFKLSQIDL 1045

Query: 626  KQRKEGEILGIKQSGMP---KFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673
            +QR+EG+ILG  QSG     KFL A   L D +++E AR+DA+ ++  DP L
Sbjct: 1046 QQRREGDILGAAQSGKKSTLKFLRA---LADATIIERAREDARALIAADPTL 1094


>gi|313794017|gb|EFS42041.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL110PA1]
 gi|313801403|gb|EFS42654.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL110PA2]
 gi|313839875|gb|EFS77589.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL086PA1]
 gi|314963629|gb|EFT07729.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL082PA1]
 gi|315079483|gb|EFT51476.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL053PA2]
 gi|327451962|gb|EGE98616.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL092PA1]
          Length = 749

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 196/606 (32%), Positives = 316/606 (52%), Gaps = 57/606 (9%)

Query: 85  QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           ++RRP    +++L+DG   + + FF +       + +F         GK+ + +    +V
Sbjct: 95  RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154

Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181
           HP ++  +               +  V    +  +Y   + L    +   + +++E+   
Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           L   LPEW    L Q+   PS+ EA++ IH P    + +  +   ERL ++E +A Q+ +
Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 267

Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            + R+  ++ +  +    +G +       +PF+PT  Q+   + I  D+S    M R+LQ
Sbjct: 268 AVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 327

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348
           G+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  I     +            
Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGEGLDAPEI 387

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              V ++TG+M  A  R AL  IA G A II+GTH+L    + Y  + LV+VDEQHRFGV
Sbjct: 388 STGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447

Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465
           +QR  LT    A PH L++TATPIPRT+ +T  GD+++S + E P GR  ++T ++ +  
Sbjct: 448 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507

Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517
             + +    +R++     G + + +CP+I      +    R        L     +    
Sbjct: 508 HGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 567

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+DV +A++++I +A+ FG++
Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR EG +L
Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687

Query: 635 GIKQSG 640
           G  Q+G
Sbjct: 688 GSSQAG 693


>gi|289426329|ref|ZP_06428072.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           SK187]
 gi|289153057|gb|EFD01775.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           SK187]
          Length = 739

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 196/606 (32%), Positives = 316/606 (52%), Gaps = 57/606 (9%)

Query: 85  QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           ++RRP    +++L+DG   + + FF +       + +F         GK+ + +    +V
Sbjct: 85  RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 144

Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181
           HP ++  +               +  V    +  +Y   + L    +   + +++E+   
Sbjct: 145 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 204

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           L   LPEW    L Q+   PS+ EA++ IH P    + +  +   ERL ++E +A Q+ +
Sbjct: 205 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 257

Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            + R+  ++ +  +    +G +       +PF+PT  Q+   + I  D+S    M R+LQ
Sbjct: 258 AVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 317

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348
           G+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  I     +            
Sbjct: 318 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGEGLDAPEI 377

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              V ++TG+M  A  R AL  IA G A II+GTH+L    + Y  + LV+VDEQHRFGV
Sbjct: 378 STGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 437

Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465
           +QR  LT    A PH L++TATPIPRT+ +T  GD+++S + E P GR  ++T ++ +  
Sbjct: 438 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 497

Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517
             + +    +R++     G + + +CP+I      +    R        L     +    
Sbjct: 498 HGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 557

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+DV +A++++I +A+ FG++
Sbjct: 558 GLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 617

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR EG +L
Sbjct: 618 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 677

Query: 635 GIKQSG 640
           G  Q+G
Sbjct: 678 GSSQAG 683


>gi|145641878|ref|ZP_01797453.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           R3021]
 gi|145273500|gb|EDK13371.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           22.4-21]
          Length = 390

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 163/373 (43%), Positives = 237/373 (63%), Gaps = 6/373 (1%)

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +    R+  
Sbjct: 1   MVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGKSRQAE 60

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHV 423
           LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K       PH 
Sbjct: 61  LEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAGFYPHQ 120

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEG 482
           L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++ R+K   ++E 
Sbjct: 121 LIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNACVNEK 180

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++AYW+C  I+E +    ++    +  L +     +I ++HGRM   +K+ VM  FKN  
Sbjct: 181 RQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAE 240

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y PPL 
Sbjct: 241 LDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLG 300

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +A       ++   + 
Sbjct: 301 KVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMIPTVQF 360

Query: 662 DAKHILTQDPDLT 674
            AK ++ + PDL 
Sbjct: 361 YAKSLIQKYPDLA 373


>gi|303233282|ref|ZP_07319954.1| putative ATP-dependent DNA helicase RecG [Atopobium vaginae
           PB189-T1-4]
 gi|302480672|gb|EFL43760.1| putative ATP-dependent DNA helicase RecG [Atopobium vaginae
           PB189-T1-4]
          Length = 775

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 220/705 (31%), Positives = 343/705 (48%), Gaps = 80/705 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP----YKILLNDGT 98
           DLL   P  ++D  ++  I+  +  + VTI   I++  S +L   +P    +++ + D +
Sbjct: 53  DLLMCMPRRYLDFTHQVDIAHAAINQTVTI---IARVDSIKLTYPKPRLSIFEMFVVDKS 109

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKI------KKLKNRIIMV-----HPHYIFHN 147
             + L FF  +   L   +  G  + ++GK+      K +   ++ V             
Sbjct: 110 AAMRLSFF--RQPWLAKKYHVGDVVALSGKVAFSYGFKTMNAPLVEVLTPASSLPSSSPV 167

Query: 148 SQDVNFPLIEAVYSLPTGL------------SVDLFKKIIVEALSRLPVLPEWIEKDLLQ 195
           S D   PL +  Y+ P+ +            S  ++   + +AL++   + +W+   L+ 
Sbjct: 168 STDATQPLTQGTYAQPSNMRVMPIYAMCADISTAVYHAAVKQALAQYVPVVDWLPSTLVA 227

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQFKKEIGIP 254
           K     + +AF  +H PR   D      AR R AY+ELL  Q+AL +    +  +  G  
Sbjct: 228 KHQLLGVNQAFFSMHAPRTCAD---VYHARRRFAYEELLYLQLALRMRHVNETGERAGFT 284

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              +G   ++ LR +PFS T  Q+    ++L DM+    MLR+L GDVG+GKT V  + M
Sbjct: 285 HVTQGPCVERFLRALPFSYTTEQQQCADELLGDMAANKPMLRLLLGDVGTGKTAVCALGM 344

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           AA  +   QA +MAP  +LA Q+ + I        I   ++T   P A R +    IA G
Sbjct: 345 AACCDTHTQAALMAPTVVLASQYTQSIGPLLDAAHISWALLTSATPAAERARICNDIARG 404

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--------APHVLLM 426
              ++ GT AL    IQ+  L  +I+DEQHRFGV QR +L  KA            VL+M
Sbjct: 405 AITVVFGTVALLSKDIQFSALSYIIIDEQHRFGVHQREELQHKAQLSSARPGHTADVLMM 464

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATP+PR+L L+  GD+ +S+I  KP     I T IIP   +      ++  L+ G++ Y
Sbjct: 465 SATPVPRSLALSLYGDMAVSRICHKPHAGAKITTHIIPTENLFVAYSAMQEALARGEQCY 524

Query: 487 WICPQI----------EEKKESNFR-------SVVERFNSLHEHFTSS------------ 517
            ICP I             + SN R        V + F S  +H  ++            
Sbjct: 525 IICPSITESSADSTTTSSAESSNVRVHADDACDVADAFVSQTKHIHAAQTVHEQLLRGEF 584

Query: 518 ----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               I ++ G +   DKE VM++F+     +L+ATT++EVG+DV +A+ ++I +A+ FGL
Sbjct: 585 SAWRIGLLTGALKTEDKERVMEAFRAHEIDVLVATTIVEVGVDVPNANTMLILDADRFGL 644

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           A LHQLRGRVGRG   +   +         + TRL++L++T DGF +A+ DL+ R EGEI
Sbjct: 645 ATLHQLRGRVGRGSAPAQVFMHCAARPQTPARTRLAMLEHTNDGFELAQRDLELRSEGEI 704

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL---TQDPDLTS 675
           LG KQSG+             L+E AR DA  I+   TQ  + TS
Sbjct: 705 LGYKQSGVQTLTFCDMVQDIDLIEAARVDADEIIEKSTQTCEHTS 749


>gi|228982575|ref|ZP_04142834.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis Bt407]
 gi|228776758|gb|EEM25066.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis Bt407]
          Length = 604

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 205/601 (34%), Positives = 334/601 (55%), Gaps = 37/601 (6%)

Query: 86  KRRPYKILL--NDGTGEITLLFFY------RKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
           K +P  ++L   D    I  + F+      +K  + ++  F GR ++VT   +K    + 
Sbjct: 5   KTKPNAVILKVEDSKASIIYVTFFHQSYIAQKFTINESYIFCGR-VSVTYGYRKF---VS 60

Query: 138 MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197
           M +P  ++  S ++N P I  VYS   G+S D  K+ +  A S +    E++E  +++K 
Sbjct: 61  MANP-ILYGPSSELN-PGILPVYSKIKGMSDDYLKRCMNSAYS-IVRSDEYLENSIIKKF 117

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
                 +A   IH P+     E  +  + R  +DEL    + LL       K+    I+ 
Sbjct: 118 DMIYFRKALQYIHFPKTT---EEINEGKSRFLFDELFFFNLNLLQNENNQMKQSPFEID- 173

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           + +++++++  +PF  T+ Q +A++ I + M  K R+  ++QGDVG GKT+VA+ ++  A
Sbjct: 174 KFELSKQLMGELPFELTEGQRNALRMISKKMKNKERVNALIQGDVGCGKTMVAIFSLLMA 233

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           VE G Q  +M P  +LA+QHYE I +   +  I V  ++G+M    R+K ++ I  G+  
Sbjct: 234 VENGYQGALMCPTSVLAKQHYEEITERFSSFGIKVAYLSGDMKVRERKKVVKAIKEGEVD 293

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLV 436
           I++GTHA+    +++  L L IVDE+HRFGV+QR  L  KA+   H + M+ATPIPR+L 
Sbjct: 294 IVVGTHAVLSKDVEFQSLALTIVDEEHRFGVKQRELLQLKASKGVHTISMSATPIPRSLA 353

Query: 437 LTSLGD-IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           LT  GD ID+  I   P GRKP++T +I +   ++   R+   +  G++AY +CP +EE 
Sbjct: 354 LTIHGDSIDVMNIKSLPKGRKPVETTLITVE--EDSYRRIYEEVKSGRQAYVVCPLVEES 411

Query: 496 KES---NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                 +  SV E F     +F      + +  G+M   D ++ ++ F N    + I+TT
Sbjct: 412 NSDMLKDVESVEEAFAKAKTYFEPKGIRVGMATGKMKQQDIDAELEKFANKEYDIFISTT 471

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +IEVG++V +A++I+I+NAE FGLAQLHQLRGRVGRG   S C+LL     ++    +L 
Sbjct: 472 IIEVGVNVPNATVILIKNAERFGLAQLHQLRGRVGRGSYQSYCLLL-SDKATEMGRRKLE 530

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF---LIAQPELHDSLLEIARKDAKHI 666
            +  T DGFLIAE+DL+ R  G+ +G  QSG  K+   ++   +L++S+    R + K I
Sbjct: 531 TMCETTDGFLIAEKDLELRGTGDFIGTSQSGQDKYVMLMLGNTDLNESI----RNEVKDI 586

Query: 667 L 667
           L
Sbjct: 587 L 587


>gi|301165526|emb|CBW25097.1| putative ATP-dependent DNA helicase [Bacteriovorax marinus SJ]
          Length = 713

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 189/532 (35%), Positives = 301/532 (56%), Gaps = 22/532 (4%)

Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRL-----PVLPEWIEKDLLQKKSFPSIAEAFN 207
            P ++  Y    G++    KK+I +  ++L      ++PE I +   Q+K  P + ++F 
Sbjct: 169 LPNLKIQYPTINGVNSSNIKKVIDKIPAQLWREIEDIIPEDIRE---QRKLLP-LDQSFL 224

Query: 208 IIHNPRKAKDFE-WTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
           +IH   K +  E W+      A++RL Y+E L  Q+ + L +K+      I + ++    
Sbjct: 225 LIH--AKTEHLEKWSDGLYEEAKKRLIYEEFLDEQLKIHLRKKKNINISAIKLEIKDVDR 282

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +K     P+  T  Q+S +K+I  D++   RM+R++QGDVG GKT VA+ +    + +G 
Sbjct: 283 KKYSSIYPYELTPDQDSTLKEICIDLNSGKRMMRLVQGDVGCGKTTVAITSSFLIINSGL 342

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  +M P   LA+QH+E I+ Y  + +   +++ G+     +++ L+ + +G+   IIGT
Sbjct: 343 QVALMCPTEALAKQHFEEIQSYCHDLKFTSKLLCGSTSSKDKKEILKGLENGEVDFIIGT 402

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           HAL Q+ +++  L L I+DEQH+FGV QRLKL  K    H L+M+ATPIPR+L +T  GD
Sbjct: 403 HALIQNEVKFKNLALAIIDEQHKFGVDQRLKLLNKGEGTHCLIMSATPIPRSLSMTQYGD 462

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---N 499
           ++IS I   P+GRK  KT I+      + +  +    S G++ Y + P I E  +    N
Sbjct: 463 LNISTIKTIPSGRKGSKTRIVMPENFGKFLNFINTRASMGEQIYIVVPAITESPKQDMLN 522

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              V+E+F     +   ++  +HG++ + DK  V+  FKN    +LIAT+VIEVGI++++
Sbjct: 523 LEEVLEKFKKFFPNL--NVQGLHGQLKNEDKNQVLKEFKNNEVNILIATSVIEVGINILN 580

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A+++ I N E FGL+ LHQLRGRVGRG++   C L+    +S+ S  R+ V++   DGF 
Sbjct: 581 ATVMAIMNPERFGLSSLHQLRGRVGRGDKPGFCFLVIDKSVSQESIHRVQVIEKYSDGFQ 640

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKF-LIAQPELHDSLLEIARKDAKHILTQD 670
           IAEEDLK R  G+  G +QSG      IA   L  S L+  R D   IL Q+
Sbjct: 641 IAEEDLKIRGAGDTFGKEQSGSNNGKKIANIILDFSTLQAVRDDLSEILKQN 692


>gi|300741702|ref|ZP_07071723.1| ATP-dependent DNA helicase RecG [Rothia dentocariosa M567]
 gi|300380887|gb|EFJ77449.1| ATP-dependent DNA helicase RecG [Rothia dentocariosa M567]
          Length = 763

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 208/651 (31%), Positives = 339/651 (52%), Gaps = 82/651 (12%)

Query: 97  GTGEIT----LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDV 151
           GTG +     L FF   T   +     G  +  +GK+   +    + +PHY +  +  + 
Sbjct: 96  GTGRVGSTMKLSFFNAWTAARE--IHAGETMMFSGKVGIYRGEYTLTNPHYALLSDDGNA 153

Query: 152 NFP-LIEA---VYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEA 205
           N P   EA   VY  P  L  D     I + +  +P+  L + I   + + +  PS+   
Sbjct: 154 NAPERAEAPIPVYRAPVKLPTDRIATAIAQLIESVPLKELEDPIPYKIRRARKVPSLEWT 213

Query: 206 FNIIHNPRKAKDFEWTSPARERLAYDE--LLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263
           +  +H P    +  W + A+ ++ Y E  +L   +A L   +     +  P   +G  A 
Sbjct: 214 YRALHTPDS--EDTWRA-AQAQMRYREAFVLQSALARLHAARAAHATVARPALPDGA-AD 269

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            +L  +P+  T+ Q+   K+I +D++  + M R+LQGDVGSGKT+VAL AM    ++GGQ
Sbjct: 270 ALLNVLPYELTEGQQRVGKEISRDLASPSPMNRLLQGDVGSGKTVVALRAMLQVADSGGQ 329

Query: 324 AVIMAPIGILAQQH-------------------YEFIKKYTQNTQ--------IIVEIIT 356
           + ++AP  +LA+QH                   YE    + QN +        + V +++
Sbjct: 330 SAMLAPTEVLAEQHFRSILDILGDLADTEGIPGYETTLFHPQNQKESKKPAHRVRVRLLS 389

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-T 415
            +MP AH+R  L  +A G A ++IGTHAL  D++ +  L +V+VDEQHRFGV+QR  L  
Sbjct: 390 ASMPSAHKRAVLAELADGTADVVIGTHALLSDAVTFRDLGMVVVDEQHRFGVEQRDSLRG 449

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEV 471
                PH L+MTATPIPRT+ +T  GD+D+S + + PAGR+   T ++P+       D +
Sbjct: 450 NNGELPHRLVMTATPIPRTVAMTVFGDLDVSVLDQLPAGRQQTATHVVPLVEKPTWADRL 509

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKE-------------------SNFRSVVERFNSLHE 512
             R +  +  G + Y + P+I +  E                   S+ ++ +    ++  
Sbjct: 510 WTRAREEIDAGHQVYVVVPKIGDDDEELEEGQQLFGDAGREGSQSSDGKTRLTSVTAMTA 569

Query: 513 HF-------TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +         + IA +HGRM   +K +VM +F+ G   +L++TTVIEVG++V +A++++I
Sbjct: 570 YLKQNPALTGTRIASLHGRMDPEEKTAVMTAFERGEIDILVSTTVIEVGVNVPNATLMMI 629

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            +A+ FG++ LHQLRGRVGRG    +C+L+        S  RL  +  T DGF +++ DL
Sbjct: 630 MDADRFGISGLHQLRGRVGRGGFAGTCLLVTRQQAGGVSRERLDAVAATTDGFKLSQIDL 689

Query: 626 KQRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           +QR+EG+ILG  QSG     KFL A  +   +++E AR+DA+ ++  DP L
Sbjct: 690 QQRREGDILGAAQSGKKSTLKFLRALADA--TIIERAREDARALIAADPTL 738


>gi|282850862|ref|ZP_06260236.1| putative ATP-dependent DNA helicase RecG [Lactobacillus gasseri
           224-1]
 gi|282557814|gb|EFB63402.1| putative ATP-dependent DNA helicase RecG [Lactobacillus gasseri
           224-1]
          Length = 401

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 158/381 (41%), Positives = 247/381 (64%), Gaps = 2/381 (0%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA+ A+ A + AG QA +M P  ILAQQH+  + +  +   + V 
Sbjct: 1   MKRLLQGDVGSGKTVVAVFAIYATITAGFQAALMVPTEILAQQHFAKVDELLRPLGVRVA 60

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+  +  +++    +A G  +++IGTHAL Q  + +  L LVI+DEQHRFGV QR  
Sbjct: 61  LLTGDTKELEKKEIYRELADGTINVVIGTHALIQKDVHFKNLGLVIIDEQHRFGVNQRNT 120

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L +K  AP VL MTATPIPRTL LT  GD+ +S+I   P GRKP+ +     +++ EV+E
Sbjct: 121 LIKKGVAPDVLAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLKEVLE 180

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
            ++  L +G + Y + P I E ++S+ ++  +    L  +F   ++ ++HG+M    K  
Sbjct: 181 LMRSQLEKGFQIYVVTPLISESEKSDLKNAEDLQARLAHYFKDENVVLLHGQMKGDQKNE 240

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +MDSF  G   +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C
Sbjct: 241 IMDSFAAGKIDILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFC 300

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           + +  P  ++    R++++ +T +GF +AEEDLK R EG++ G  QSG+P+F +      
Sbjct: 301 VFVSDPK-TEIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVND 359

Query: 653 DSLLEIARKDAKHILTQDPDL 673
            + L  A+K+A+ ++  DP+L
Sbjct: 360 YNTLVTAQKEARALVKADPNL 380


>gi|216263710|ref|ZP_03435705.1| ATP-dependent DNA helicase RecG [Borrelia afzelii ACA-1]
 gi|215980554|gb|EEC21375.1| ATP-dependent DNA helicase RecG [Borrelia afzelii ACA-1]
          Length = 686

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 211/623 (33%), Positives = 330/623 (52%), Gaps = 34/623 (5%)

Query: 43  DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LND 96
           DL+ + P  + DR      P  S++    ++T+   +  H  F    ++  K+    +ND
Sbjct: 34  DLIEFFPVKYEDRQNIQTFPDFSKVKSCDMMTVFTVVG-HKKFGDSSKKNLKLTAKSVND 92

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---IFHNSQDVNF 153
              EI  L F R    L+NVF   +K  +  K        +    ++   +F ++ +  F
Sbjct: 93  EPFEI--LLFNRA--FLENVFKIDKKFYIYSKFTYNDYSGLWSCSNFDSEVFSDNPE-RF 147

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNP 212
             I  VYSL  GL+       + EAL       +  I K L++K S  S++EA   IH P
Sbjct: 148 KKILPVYSLTEGLTSKKISLYVREALEYFFKFGQTDIPKFLIEKYSLLSLSEALKEIHFP 207

Query: 213 RKAKDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKIL 266
                 E    A++ L Y E+   Q       + +L R++         ++   + ++++
Sbjct: 208 ---SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKVLFREK--------KHLSRDLLERVI 256

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            ++PF  T+ Q  +I +I  D++    M R+LQGDVGSGKTLVAL++    +EAG Q   
Sbjct: 257 SSLPFELTEGQRISIDEIFSDLNSSKPMNRLLQGDVGSGKTLVALLSGIPLIEAGYQVAF 316

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  +LA+QHY+ +        I V ++TG++ +  + +ALE I  G + +I+GTHA+F
Sbjct: 317 MAPTDLLARQHYDNLSNILSPFNISVTLLTGSLKKRDKEQALESIKSGASGLIVGTHAIF 376

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            +S ++ +L  VI+DEQH+FGV QR +L  K     +LLM+ATPIPR+  LT  GD++IS
Sbjct: 377 YESTEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEIS 436

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I   P GR PI T +       +V E L+  L++G + Y++ P I   ++   + V   
Sbjct: 437 FIKTLPKGRLPITTYLAKHGNEGKVYEFLRKELAKGHQVYFVYPLISSSEKFELKDVNNM 496

Query: 507 FNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              L E F   +  ++H ++    KE +M +F +    +L+AT+VIEVGID  +A+ +++
Sbjct: 497 CLKLKEVFGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVV 556

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           E+AE FGL+ LHQ+RGRVGR    S   LLY  PL+     RL  +K   DGF IAEEDL
Sbjct: 557 EHAERFGLSTLHQIRGRVGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDL 616

Query: 626 KQRKEGEILGIKQSGMPKFLIAQ 648
           + R  G + G++Q+G  K  IA 
Sbjct: 617 RLRGPGNLFGLEQAGYLKLKIAN 639


>gi|313763622|gb|EFS34986.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL013PA1]
 gi|313816802|gb|EFS54516.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL059PA1]
 gi|313829579|gb|EFS67293.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL063PA2]
 gi|314914626|gb|EFS78457.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL005PA4]
 gi|314920828|gb|EFS84659.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL050PA3]
 gi|314954335|gb|EFS98741.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL027PA1]
 gi|314957387|gb|EFT01490.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL002PA1]
 gi|315099250|gb|EFT71226.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL059PA2]
 gi|315100516|gb|EFT72492.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL046PA1]
 gi|315109049|gb|EFT81025.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL030PA2]
 gi|327455001|gb|EGF01656.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL087PA3]
 gi|328755165|gb|EGF68781.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL087PA1]
 gi|328758056|gb|EGF71672.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL025PA2]
          Length = 749

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 196/606 (32%), Positives = 315/606 (51%), Gaps = 57/606 (9%)

Query: 85  QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           ++RRP    +++L+DG   + + FF +       + +F         GK+ + +    +V
Sbjct: 95  RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154

Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181
           HP ++  +               +  V    +  +Y   + L    +   + +++E+   
Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           L   LPEW    L Q+   PS+ EA++ IH P    + +  +   ERL ++E +A Q+ +
Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 267

Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            + R+  ++ +  +    +G +       +PF+PT  Q+   + I  D+S    M R+LQ
Sbjct: 268 AVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 327

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348
           G+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  I     +            
Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGEGLDAPEI 387

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              V ++TG+M  A  R AL  IA G A II+GTH+L    + Y  + LV+VDEQHRFGV
Sbjct: 388 STGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447

Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465
           +QR  LT    A PH L++TATPIPRT+ +T  GD+++S + E P GR  ++T ++ +  
Sbjct: 448 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507

Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517
             + +     R++     G + + +CP+I      +    R        L     +    
Sbjct: 508 HGSWLTRAWRRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 567

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+DV +A++++I +A+ FG++
Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR EG +L
Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687

Query: 635 GIKQSG 640
           G  Q+G
Sbjct: 688 GSSQAG 693


>gi|314930507|gb|EFS94338.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL067PA1]
          Length = 749

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 196/606 (32%), Positives = 315/606 (51%), Gaps = 57/606 (9%)

Query: 85  QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           ++RRP    +++L+DG   + + FF +       + +F         GK+ + +    +V
Sbjct: 95  RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154

Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181
           HP ++  +               +  V    +  +Y   + L    +   + +++E+   
Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           L   LPEW    L Q+   PS+ EA++ IH P    + +  +   ERL ++E +A Q+ +
Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 267

Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            + R+  ++ +  +    +G +       +PF+PT  Q+   + I  D+S    M R+LQ
Sbjct: 268 AVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 327

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348
           G+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  I     +            
Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGEGLDAPEI 387

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              V ++TG+M  A  R AL  IA G A II+GTH+L    + Y  + LV+VDEQHRFGV
Sbjct: 388 STGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447

Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465
           +QR  LT    A PH L++TATPIPRT+ +T  GD+++S + E P GR  ++T ++ +  
Sbjct: 448 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507

Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517
             + +     R++     G + + +CP+I      +    R        L     +    
Sbjct: 508 HGSWLTRAWRRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 567

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+DV +A++++I +A+ FG++
Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR EG +L
Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687

Query: 635 GIKQSG 640
           G  Q+G
Sbjct: 688 GSSQAG 693


>gi|111115409|ref|YP_710027.1| ATP-dependent DNA helicase RecG [Borrelia afzelii PKo]
 gi|110890683|gb|ABH01851.1| DNA recombinase [Borrelia afzelii PKo]
          Length = 686

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 210/623 (33%), Positives = 331/623 (53%), Gaps = 34/623 (5%)

Query: 43  DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LND 96
           DL+ + P  + DR      P  S++    ++T+   +  H  F    ++  K+    +ND
Sbjct: 34  DLIEFFPVKYEDRQNIQTFPDFSKVKSCDMMTVFTVVG-HKKFGDSSKKNLKLTAKSVND 92

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---IFHNSQDVNF 153
              EI  L F R    L+NVF   +K  +  K        +    ++   +F ++ +  F
Sbjct: 93  EPFEI--LLFNRA--FLENVFKIDKKFYIYSKFTYNDYSGLWSCSNFDSEVFSDNPE-RF 147

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNP 212
             I  VYSL  GL+       + EAL       +  I K L++K S  S++EA   IH P
Sbjct: 148 KKILPVYSLTEGLTSKKISLYVREALEYFFKFGQTDIPKFLIEKYSLLSLSEALKEIHFP 207

Query: 213 RKAKDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKIL 266
                 E    A++ L Y E+   Q       + +L R++         ++   + ++++
Sbjct: 208 ---SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKVLFREK--------KHLSRDLLERVI 256

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            ++PF  T+ Q  +I +I  D++    M R+LQGDVGSGKTLVAL++    +EAG Q   
Sbjct: 257 SSLPFELTEGQRISIDEIFSDLNSSKPMNRLLQGDVGSGKTLVALLSGIPLIEAGYQVAF 316

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  +LA+QHY+ +     +  I V ++TG++ +  + ++LE I  G + +I+GTHA+F
Sbjct: 317 MAPTDLLARQHYDNLSNILSSFNISVTLLTGSLKKRDKEQSLESIKSGASGLIVGTHAIF 376

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            +S ++ +L  VI+DEQH+FGV QR +L  K     +LLM+ATPIPR+  LT  GD++IS
Sbjct: 377 YESTEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEIS 436

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I   P GR PI T +       +V E L+  L++G + Y++ P I   ++   + V   
Sbjct: 437 FIKTLPKGRLPITTYLAKHGNEGKVYEFLRKELAKGHQVYFVYPLISSSEKFELKDVNNM 496

Query: 507 FNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              L E F   +  ++H ++    KE +M +F +    +L+AT+VIEVGID  +A+ +++
Sbjct: 497 CLKLKEVFGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVV 556

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           E+AE FGL+ LHQ+RGRVGR    S   LLY  PL+     RL  +K   DGF IAEEDL
Sbjct: 557 EHAERFGLSTLHQIRGRVGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDL 616

Query: 626 KQRKEGEILGIKQSGMPKFLIAQ 648
           + R  G + G++Q+G  K  IA 
Sbjct: 617 RLRGPGNLFGLEQAGYLKLKIAN 639


>gi|327457710|gb|EGF04365.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL083PA2]
          Length = 749

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 196/606 (32%), Positives = 315/606 (51%), Gaps = 57/606 (9%)

Query: 85  QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           ++RRP    +++L+DG   + + FF +       + +F         GK+ + +    +V
Sbjct: 95  RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154

Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181
           HP ++  +               +  V    +  +Y   + L    +   + +++E+   
Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           L   LPEW    L Q+   PS+ EA++ IH P    + +  +   ERL ++E +A Q+ +
Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 267

Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            + R+  ++ +  +    +G +       +PF+PT  Q+   + I  D+S    M R+LQ
Sbjct: 268 AVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 327

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348
           G+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  I     +            
Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGEGLDAPEI 387

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              V ++TG+M  A  R AL  IA G A II+GTH+L    + Y  + LV+VDEQHRFGV
Sbjct: 388 STGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447

Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465
           +QR  LT    A PH L++TATPIPRT+ +T  GD+++S + E P GR  ++T ++ +  
Sbjct: 448 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507

Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517
             + +     R++     G + + +CP+I      +    R        L     +    
Sbjct: 508 HGSWLTRAWRRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 567

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+DV +A++++I +A+ FG++
Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR EG +L
Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687

Query: 635 GIKQSG 640
           G  Q+G
Sbjct: 688 GSSQAG 693


>gi|313813576|gb|EFS51290.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL025PA1]
          Length = 749

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 201/639 (31%), Positives = 331/639 (51%), Gaps = 58/639 (9%)

Query: 85  QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           ++RRP    +++L+DG   + + FF +       + +F         GK+ + +    +V
Sbjct: 95  RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154

Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181
           HP ++  +               +  V    +  +Y   + L    +   + +++E+   
Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           L   LPEW    L Q+   PS+ EA++ IH P    + +  +   ERL ++E +A Q+ +
Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 267

Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            + R+  ++ +  +    +G +       +PF+PT  Q+   + I  D+S    M R+LQ
Sbjct: 268 AVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 327

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348
           G+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  I     +            
Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGEGLDAPEI 387

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              V ++TG+M  A  R AL  IA G A II+GTH+L    + Y  + LV+VDEQHRFGV
Sbjct: 388 STGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447

Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465
           +QR  LT    A PH L++TATPIPRT+ +T  GD+++S + E P GR  ++T ++ +  
Sbjct: 448 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507

Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517
             + +    +R++     G + + +CP+I      +    R        L     +    
Sbjct: 508 HGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 567

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +  +H R+   +K+ V+D F  G  ++LI+TTVIEVG+DV +A++++I +A+ FG++
Sbjct: 568 GLRVEALHSRLDSSEKDLVIDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR EG +L
Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687

Query: 635 GIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPD 672
           G  Q+G    L + +   H  ++  ++  A+  +T+ PD
Sbjct: 688 GSSQAGYSSPLRLLRVLDHAEIVTASKGLAERWVTEAPD 726


>gi|224534653|ref|ZP_03675225.1| ATP-dependent DNA helicase RecG [Borrelia spielmanii A14S]
 gi|224513901|gb|EEF84223.1| ATP-dependent DNA helicase RecG [Borrelia spielmanii A14S]
          Length = 686

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 211/623 (33%), Positives = 331/623 (53%), Gaps = 34/623 (5%)

Query: 43  DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LND 96
           DL+ + P  + DR      P  S++    ++T+   +  H  F    ++  K+    +ND
Sbjct: 34  DLIEFFPVKYEDRQNIQTFPDFSKMKSCDMMTVFTVVG-HKKFGDSSKKNLKLTARSVND 92

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY---IFHNSQDVNF 153
              EI  L F R    L+NVF   +K  +  K        +    ++   +F ++ +  F
Sbjct: 93  EPFEI--LLFNRA--FLENVFKIDKKFYIYSKFTYNDYSGLWSCSNFDSEVFSDNPE-RF 147

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNP 212
             I  VYSL  GL+       + EAL       +  I K L++K S  S++EA   IH P
Sbjct: 148 KKILPVYSLTEGLTSKKISLYVREALEYFFKFGQTDIPKFLIEKYSLLSLSEALKEIHFP 207

Query: 213 RKAKDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKIL 266
                 E    A++ L Y E+   Q       + +L R++         ++   + ++++
Sbjct: 208 ---SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKVLFREK--------KHLSRDLLERVV 256

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            ++PF  T+ Q  +I +I  D++    M R+LQGDVGSGKTLVAL++    +EAG Q   
Sbjct: 257 SSLPFELTEGQRISIDEIFLDLNSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAF 316

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  +LA+QHY+ +        I V ++TG++ +  + +ALE I  G + +I+GTHA+F
Sbjct: 317 MAPTDLLARQHYDNLSNILSPLNISVTLLTGSLKKRDKEQALESIRSGTSGLIVGTHAIF 376

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            +S ++ +L  VI+DEQH+FGV QR +L  K     +LLM+ATPIPR+  LT  GD+++S
Sbjct: 377 YESTEFKRLAYVIIDEQHKFGVFQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEVS 436

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I   P GR PI T +      D+V E L+  L +G + Y++ P I   ++   + V   
Sbjct: 437 FIKTLPKGRLPITTYLAKHGNEDKVYEFLRKELLKGHQVYFVYPLISSSEKFELKDVNNM 496

Query: 507 FNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              L E F+  +  ++H ++    KE +M +F +    +L+AT+VIEVGID  +A+ +++
Sbjct: 497 CLKLKEVFSEYVVDMLHSKLPADLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVV 556

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           E+AE FGL+ LHQ+RGRVGR    S   LLY  PL+     RL  +K   DGF IAEEDL
Sbjct: 557 EHAERFGLSTLHQIRGRVGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDL 616

Query: 626 KQRKEGEILGIKQSGMPKFLIAQ 648
           + R  G + G++Q+G  K  IA 
Sbjct: 617 RLRGPGNLFGLEQAGYLKLKIAN 639


>gi|314968539|gb|EFT12637.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL037PA1]
          Length = 749

 Score =  314 bits (804), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 196/606 (32%), Positives = 315/606 (51%), Gaps = 57/606 (9%)

Query: 85  QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           ++RRP    +++L+DG   + + FF +       + +F         GK+ + +    +V
Sbjct: 95  RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154

Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181
           HP ++  +               +  V    +  +Y   + L    +   + +++E+   
Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           L   LPEW    L Q+   PS+ EA++ IH P    + +  +   ERL ++E +A Q+ +
Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 267

Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            + R+  ++ +  +    +G +       +PF+PT  Q+   + I  D+S    M R+LQ
Sbjct: 268 AVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 327

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348
           G+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  I     +            
Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGEGLDAPEI 387

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              V ++TG+M  A  R AL  IA G A II+GTH+L    + Y  + LV+VDEQHRFGV
Sbjct: 388 STGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447

Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465
           +QR  LT    A PH L++TATPIPRT+ +T  GD+++S + E P GR  ++T ++ +  
Sbjct: 448 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507

Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517
             + +     R++     G + + +CP+I      +    R        L     +    
Sbjct: 508 HGSWLTRAWRRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 567

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+DV +A++++I +A+ FG++
Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR EG +L
Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687

Query: 635 GIKQSG 640
           G  Q+G
Sbjct: 688 GSSQAG 693


>gi|3150215|emb|CAA19182.1| ATP-dependent DNA helicase [Mycobacterium leprae]
          Length = 592

 Score =  314 bits (804), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 195/520 (37%), Positives = 297/520 (57%), Gaps = 42/520 (8%)

Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
           FP+  A   L    S D++   + + L  L  + + +  DL  K    S  EA   IH  
Sbjct: 23  FPIYPASTKLQ---SWDIYA-CVRQVLEVLDPVADPLPADLRAKHGLVSEDEALRAIHLA 78

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG--IPINVEGKIAQKILRNIP 270
               D      ARERL +DE +  Q AL+  R     E G   P   +G +A+ ++R +P
Sbjct: 79  ESESD---RRRARERLTFDEAVGLQWALVTRRHGELSESGPSAPPRSDGLMAE-LMRRLP 134

Query: 271 FSPTKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           F  T+ Q   ++D+L D     R L R+LQG+VGSGKT+VA++AM   ++AG Q V++AP
Sbjct: 135 FELTEGQRE-VRDVLSDGLAATRPLNRLLQGEVGSGKTIVAVLAMLQMIDAGYQCVLLAP 193

Query: 330 IGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             +LA QH   I+                    V ++TG+M  A ++K    I  GQ  I
Sbjct: 194 TEVLAAQHLLSIRDVLGPLGMGCQLGGAENATQVALLTGSMTMAQKKKVRADIFSGQTGI 253

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTL 435
           +IGTHAL QD+I+++ L +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+
Sbjct: 254 VIGTHALLQDAIEFHNLGMVVVDEQHRFGVEQRDQLRTKARTGIMPHLLVMTATPIPRTV 313

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQ 491
            LT  GD+++S + E P GR+PI + +I +      +D   +R+   ++ G++AY + P+
Sbjct: 314 ALTVYGDLEMSTLRELPRGRQPITSNVIFVKDKPGWLDRAWQRILEEVAAGRQAYVVAPR 373

Query: 492 IEEKKE-----SNFRSVVERFNSLHEHFTSS------IAIIHGRMSDIDKESVMDSFKNG 540
           I+E ++      N R   E  + L+    S       +A++HGR+S  +K++ M +F+ G
Sbjct: 374 IDETEDPQKGGQNSRPS-ETADGLYARLRSGELANVRLALMHGRLSADEKDAAMMAFRAG 432

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ T VIEVG+DV +A+I+++ +A+ FG++QLHQLRGR+GRG   S C+L      
Sbjct: 433 EIDVLVCTNVIEVGVDVPNATIMLVMDADRFGISQLHQLRGRIGRGTHPSLCLLASWVSP 492

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
              +  RL  +  T DGF +A+ DLK+R+EG++LG  QSG
Sbjct: 493 GSPAGRRLCAVAETMDGFALADLDLKERREGDVLGRNQSG 532


>gi|282854612|ref|ZP_06263947.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           J139]
 gi|282582194|gb|EFB87576.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           J139]
 gi|314923870|gb|EFS87701.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL001PA1]
 gi|314966073|gb|EFT10172.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL082PA2]
 gi|314981845|gb|EFT25938.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL110PA3]
 gi|315090770|gb|EFT62746.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL110PA4]
 gi|315094922|gb|EFT66898.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL060PA1]
 gi|315104244|gb|EFT76220.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL050PA2]
 gi|327328049|gb|EGE69818.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes HL103PA1]
          Length = 749

 Score =  313 bits (803), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 203/639 (31%), Positives = 329/639 (51%), Gaps = 58/639 (9%)

Query: 85  QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           ++RRP    +++L+DG   + + FF +       + +F         GK+ + +    +V
Sbjct: 95  RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154

Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181
           HP ++  +               +  V    +  +Y   + L    +   + +++E+   
Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           L   LPEW    L Q+   PS+ EA++ IH+P    + +  +   ERL ++E +A Q  +
Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHHPHSVAEADRGT---ERLIWEEAIATQATM 267

Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            + R+  ++ +  +    +G +       +PF+PT  Q+   + I  D+S    M R+LQ
Sbjct: 268 AVRRRSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEVSRAIDADLSADRPMHRLLQ 327

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348
           G+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  I     +            
Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGGGLDAPEI 387

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              V ++TG++  A  R AL  IA G A II+GTH+L    + Y  + LV+VDEQHRFGV
Sbjct: 388 STGVALLTGSVKAAGTRAALADIASGVAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447

Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465
           +QR  LT    A PH L++TATPIPRT+ +T  GD+++S + E P GR  ++T ++ +  
Sbjct: 448 EQRSVLTTGDGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507

Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517
             + +    +R++     G + + +CP+I      +    R        L     +    
Sbjct: 508 HGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 567

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+DV +A++++I +A+ FG++
Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGELQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR EG +L
Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672
           G  Q+G    L     L  + +  A KD A+  + + PD
Sbjct: 688 GSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726


>gi|118469068|ref|YP_886743.1| ATP-dependent DNA helicase RecG [Mycobacterium smegmatis str. MC2
           155]
 gi|118170355|gb|ABK71251.1| ATP-dependent DNA helicase RecG [Mycobacterium smegmatis str. MC2
           155]
          Length = 753

 Score =  313 bits (803), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 205/653 (31%), Positives = 344/653 (52%), Gaps = 79/653 (12%)

Query: 91  KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150
           ++ L D   ++T  FF      + +    G ++ ++G++K  ++ + + HP ++   S  
Sbjct: 94  RVKLGDHKPKVTATFF--NANWMIDELKVGTRLMLSGEVKYFRDTVQLNHPAFLVLESPS 151

Query: 151 VN-----------------------------FPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
                                          FP+  A   +    S D+++  I + L+ 
Sbjct: 152 GRTIGTKSLKTIAEASGASGEDMLAEFEKEFFPIYPASAKMQ---SWDIYR-CIRQVLAV 207

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           L  +P+ + K  +Q++   S  +A   IH    A +      ARERL YDE +  Q  L+
Sbjct: 208 LDPIPDPLPKSFVQQRGLMSEDQALRAIH---LAANSTERDRARERLTYDEAIGLQWGLV 264

Query: 242 LMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             R       G   P+ V+G +A  +   +PF  T  Q   +  I  +++    M R+LQ
Sbjct: 265 ARRYGELAASGPSAPLRVDGLVA-ALRERLPFELTAGQREVLDVISGELASTRPMNRMLQ 323

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-------- 351
           G+VGSGKT+V+++AM   V+AG Q  ++AP  +LA QH   ++       +         
Sbjct: 324 GEVGSGKTIVSVLAMLQMVDAGYQCALLAPTEVLATQHARSVRDVLGPLAMAGELGGDEH 383

Query: 352 ---VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              V ++TG+M    +R   + +A G A I+IGTHAL QD++++  L +V+VDEQHRFGV
Sbjct: 384 GTRVALLTGSMTPQQKRAVRDEVASGAAGIVIGTHALLQDAVEFDNLGMVVVDEQHRFGV 443

Query: 409 QQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           +QR  L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E P GR+PI +  I +
Sbjct: 444 EQRDTLRAKAPEGLTPHLLVMTATPIPRTVALTVYGDLETSTLRELPRGRQPITSNTIFV 503

Query: 466 NR----IDEVIERLKVVLSEGKKAYWICPQIEEK------KESNFR-------SVVERFN 508
           ++    +D    R++  ++ G++AY +  +I+E       KE+  R       +VVE + 
Sbjct: 504 SQKPAWLDRAWARIREEVAAGRQAYVVASRIDENDKPSGGKENEGRQAGPPPITVVELYE 563

Query: 509 SLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            L       +   ++HGR+S  +K+ VM  F+ G   +L+ TTVIEVG+DV +++++++ 
Sbjct: 564 RLRNGPLEGLRLGLMHGRLSGDEKDEVMSRFRAGEIDVLVCTTVIEVGVDVPNSTVMVVM 623

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           +A+ FG++QLHQLRGR+GRG+  S C+L    P +  +  R+  + +T DGF +A+ DL+
Sbjct: 624 DADRFGISQLHQLRGRIGRGQHPSLCLLATRMPENSKAGERIKAVASTLDGFELADLDLE 683

Query: 627 QRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           +R+EG++LG+ QSG     +FL  +  L   ++  AR   +    QDP+ T +
Sbjct: 684 ERREGDVLGLNQSGRTINLRFLSLRDHLE--VITDARAFCETRYEQDPNDTGM 734


>gi|309806866|ref|ZP_07700853.1| putative ATP-dependent DNA helicase RecG [Lactobacillus iners
           LactinV 03V1-b]
 gi|308166732|gb|EFO68924.1| putative ATP-dependent DNA helicase RecG [Lactobacillus iners
           LactinV 03V1-b]
          Length = 489

 Score =  313 bits (802), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 176/486 (36%), Positives = 284/486 (58%), Gaps = 9/486 (1%)

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILR 267
           +H P   KD +    A+    + E    Q+ L  L+    +K  GI    +     ++  
Sbjct: 11  MHQP---KDLQQVKIAQRTAIFLEFFVFQLQLSQLLYANDQKNNGIAKKYDSSAINELKE 67

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           +I F  +  Q  AI +IL D++   RM R+LQGDVGSGKT+VA+ A+ A + AG Q  +M
Sbjct: 68  SINFQLSDDQIQAINEILADLASAKRMNRLLQGDVGSGKTIVAVFAIFACITAGYQVALM 127

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQH   I    +   +   ++T +     +++    +  G  +++IGTHA+ Q
Sbjct: 128 VPTEILAQQHMNKIVAILEPLGVRCALLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQ 187

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D + + KL LVI+DEQHRFGV QR +L  K     +L M+ATPIPRTL L+  G+  +S+
Sbjct: 188 DPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGKMVDILAMSATPIPRTLALSVYGENSVSE 247

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I + P GRK + +  I  + + +++  +   L +G + Y + P I E  + + ++    +
Sbjct: 248 IHQMPLGRKKVISYWITSDSLRKLLTLMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLY 307

Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             +  +F S  +A++HG+M+   K  +MD+F +G+ K+LI T+VIEVG+DV +A+++II 
Sbjct: 308 KKMALYFGSDRVALLHGKMASSQKSDIMDAFIHGSIKILITTSVIEVGVDVANANMMIIF 367

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           NA+HFGL+QLHQLRGR+GRG   S CI +  P  + ++  RL ++   +DGF +A EDLK
Sbjct: 368 NADHFGLSQLHQLRGRIGRGTTQSYCIFVSDPK-TDSAKKRLKIISTCDDGFALAREDLK 426

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R EG+I G  QSG+P+F +     + ++   A+K++K ++ Q+P+L    G+    L  
Sbjct: 427 LRGEGDIFGQAQSGIPQFKLGDIINNYNIFTTAQKESKILVHQNPELV---GEEYDFLKL 483

Query: 687 LYQYNE 692
           L +Y++
Sbjct: 484 LMEYDD 489


>gi|255570116|ref|XP_002526020.1| conserved hypothetical protein [Ricinus communis]
 gi|223534667|gb|EEF36360.1| conserved hypothetical protein [Ricinus communis]
          Length = 983

 Score =  313 bits (801), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 205/609 (33%), Positives = 322/609 (52%), Gaps = 61/609 (10%)

Query: 120 GRKITVTGKIKKL--KNRIIMVHPHYIFHNSQDVNFPLIEA----VYSLPTGLSVDLFKK 173
           G  + ++GK+K +  K+   M   +       DV+    E     +Y    GL+ D  + 
Sbjct: 360 GDVVCISGKVKTMSTKDHYEMREYNIDVLKDDDVSSLHPEGRPYPIYPSKGGLNPDFLRD 419

Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
           II  AL  L    + I K+++Q      + +A+  IH PR   + E    AR RL +DE 
Sbjct: 420 IIARALQALGPGIDPIPKEIIQDFRLLHLHDAYTGIHQPR---NVEEADSARRRLIFDEF 476

Query: 234 LAGQIALL---------------LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQ 277
              Q+  L               L+ K  K E+  + +     + +K L+ +P+S T SQ
Sbjct: 477 FYLQLGRLFQMLEGLSTRTEKDGLLLKYRKPELNALYVENWSSLTKKFLKALPYSLTSSQ 536

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            +A+ +I+ D+ +   M R+LQGDVG GKT+VA +A    + +G QA  M P  +LA QH
Sbjct: 537 LNAVSEIIWDLKRPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLAIQH 596

Query: 338 YEFIKKYTQN-----TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           YE + K  +      ++  + ++TG+ P    R   + +  G   ++IGTH+L  +++++
Sbjct: 597 YEHLLKLLETMEENQSKPSIALLTGSTPLKQSRMIRKDLQSGDISMVIGTHSLISENVEF 656

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKA-----------------------TAPHVLLMTAT 429
             L + +VDEQHRFGV QR +   K                         APH+L M+AT
Sbjct: 657 SALRIAVVDEQHRFGVIQRGQFNSKLYYTSLRSRMAVTTSIGSSKGDVYMAPHILAMSAT 716

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYW 487
           PIPRTL L   GD+ +++IT+ P GR P++T II  N    +++ + +   L  G + Y 
Sbjct: 717 PIPRTLALALYGDMSLTQITDLPPGRIPVETHIIEGNSQGFEDIYKMILDELEAGGRVYL 776

Query: 488 ICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           + P IE+ ++    R+      ++ + F   +  ++HGRM   +K+  +  F++G  ++L
Sbjct: 777 VYPVIEQSEQLPQLRAASADLQAISDRFQRFNCGLLHGRMKSDEKDEALRRFRSGETQIL 836

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++T VIEVG+DV DAS++++ NAE FG+AQLHQLRGRVGRGE  S CILL     + +S 
Sbjct: 837 LSTQVIEVGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGERKSKCILLGS---TSSSL 893

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAK 664
            RL VL+ + DGF +A  DL  R  G++LG KQSG +P F IA+ E+   +L+ A   A 
Sbjct: 894 NRLKVLEKSSDGFHLANADLLLRGPGDLLGKKQSGHLPDFPIARLEIVGKILQEAHDAAL 953

Query: 665 HILTQDPDL 673
            +L    DL
Sbjct: 954 KVLGDSHDL 962


>gi|319440509|ref|ZP_07989665.1| ATP-dependent DNA helicase [Corynebacterium variabile DSM 44702]
          Length = 745

 Score =  313 bits (801), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 187/513 (36%), Positives = 285/513 (55%), Gaps = 33/513 (6%)

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           E L R+P  P+W + D      F   A A   +H P +    +    AR RL ++E L  
Sbjct: 225 EMLPRVPGAPDWPQIDGAPVLDF---ATALRHVHRPPE----DGPDAARTRLKFNEALGL 277

Query: 237 QIALLLMRKQFKKEIG---IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           Q+ + L R           +P+  + +    +L  +P+  T  Q+ A+  I   M+    
Sbjct: 278 QLVMALRRADSTARHARPVVPVAPDSRYT-ALLDRLPYDLTAPQQDALSTIGDAMAGTTD 336

Query: 294 ----MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--- 346
               M  +LQGDVGSGKT+VAL+AM   V++G Q   +AP  +LA QH   +    +   
Sbjct: 337 TVTPMSMLLQGDVGSGKTVVALLAMLRVVDSGAQCAFLAPTEVLAVQHAGTLTGLLERID 396

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
             Q+ V ++TG+M  A R+ AL  I  G + I++GTHA+ QDS+ ++ L +V+VDEQHRF
Sbjct: 397 GRQVTVTLLTGSMTAAERKAALLDIISGTSDIVVGTHAIIQDSVDFFDLGMVVVDEQHRF 456

Query: 407 GVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           GV+QR KL + A     PH+L+MTATPIPRT+ +T  GD+ +  +T  P+GR  + T ++
Sbjct: 457 GVRQRDKLRENAPVERTPHLLVMTATPIPRTVAMTMFGDLSVCTLTGSPSGRGKVDTFVV 516

Query: 464 PI---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519
           P    N +D V   ++  ++ G +A+ + P+I+   E     V  R  S     T   I 
Sbjct: 517 PTFKRNWVDRVFAVIREQVASGHRAFIVVPRID--GEGGVDDVATRLES--GVLTGLRIG 572

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HGRM +  K  VM    +G   +L+ATTV+EVG+D+ +A+++++ +AE+FG++QLHQL
Sbjct: 573 RLHGRMDN--KAEVMADLASGEIDVLVATTVVEVGVDIPEATVMVVVDAENFGVSQLHQL 630

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           RGRVGRG + S C L    P  + S  RL  +  T DGF +AE DL+ R EG++LG  QS
Sbjct: 631 RGRVGRGADNSWCFLCTAVPEEEASSRRLQSIAATSDGFALAELDLRTRTEGDVLGESQS 690

Query: 640 GMPKFLIAQPELHDS--LLEIARKDAKHILTQD 670
           G     +    L D   ++E AR+ A+ ++  D
Sbjct: 691 GSRARRVTLLSLADDAVVIEEARRYAEDLVGYD 723


>gi|239917402|ref|YP_002956960.1| ATP-dependent DNA helicase RecG [Micrococcus luteus NCTC 2665]
 gi|281414113|ref|ZP_06245855.1| ATP-dependent DNA helicase RecG [Micrococcus luteus NCTC 2665]
 gi|239838609|gb|ACS30406.1| ATP-dependent DNA helicase RecG [Micrococcus luteus NCTC 2665]
          Length = 730

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 191/553 (34%), Positives = 297/553 (53%), Gaps = 37/553 (6%)

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQ------DVN-FPLIEAVYSLPTGLSVDLFKKIIVEA- 178
           G+  + + RI + +P +   +        DV   PL  A   LP+        +++    
Sbjct: 125 GRTTEYRGRITLNNPDFALLDDDVTPGEVDVRPVPLYRATGKLPSWTVRSAVARVLETVD 184

Query: 179 LSRLP-VLPEWIEKD----LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
           L R+P +L E I  +    L      P  A+A+  +H P    D   T PAR  LA  E 
Sbjct: 185 LGRIPELLTERIRAEAAAALDLDVPLPDTAQAYRDLHAP---HDVAATGPARTALALREA 241

Query: 234 LAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           L  Q AL   R + +     P     G + + +   +PF+ T  Q +  + +  +++++ 
Sbjct: 242 LLVQAALAWRRDRERAVPATPRPPRAGGLLEALDARLPFALTPGQVAVGEQLSAELAREA 301

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT------- 345
            M R+LQGDVG+GKTLVAL AM   V+AGGQA ++AP  +LA QH+  + +         
Sbjct: 302 PMSRLLQGDVGAGKTLVALRAMLQVVDAGGQAALVAPTEVLAAQHHRALLRLMGPLAEAG 361

Query: 346 -----QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
                      V ++TG++  A RR+AL  +A G+A I +GTHAL  + + + +L L +V
Sbjct: 362 TLGAGDGPATRVVLVTGSLKTAARREALLALASGEAGIAVGTHALLSEKVGFAELALAVV 421

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQHRFGV QR  L +     H+L+M+ATPIPR++ +T  GD+D+S +   P+GR+P+ T
Sbjct: 422 DEQHRFGVDQREALRRANPGTHLLVMSATPIPRSVAMTVFGDLDLSVLEGLPSGRQPVTT 481

Query: 461 VIIPINRIDEVIERLKVVLSE----GKKAYWICPQIE----EKKESNFRSVVERFNSLHE 512
            +  +     VI R+  +++E    G +A+ +CP+I+    +   +N   +  R   L  
Sbjct: 482 HVARMAHGPRVIGRVWELIAEHVAAGHQAFVVCPRIDPDDTDPGHANVEEMTPRLRGLPA 541

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                I  +HGRM   ++++ M +F  G   +L+ATTV+EVG+DV +A+++ + +A+ FG
Sbjct: 542 LAGLRIDAVHGRMDQAEQDAAMQAFARGETDVLVATTVVEVGVDVPNATVMAVLDADDFG 601

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+ LHQLRGRVGRG   + C+L    P    S  RL VL   +DG  IA+EDL QR  G+
Sbjct: 602 LSTLHQLRGRVGRGPGAAVCLLATRLPDGYPSLRRLEVLAQEQDGMRIAQEDLAQRGVGD 661

Query: 633 ILGIKQSGMPKFL 645
           +LG  QSG+   L
Sbjct: 662 VLGAAQSGLASGL 674


>gi|308234564|ref|ZP_07665301.1| ATP-dependent DNA helicase RecG [Atopobium vaginae DSM 15829]
 gi|328944162|ref|ZP_08241627.1| DNA helicase RecG [Atopobium vaginae DSM 15829]
 gi|327492131|gb|EGF23905.1| DNA helicase RecG [Atopobium vaginae DSM 15829]
          Length = 749

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 212/692 (30%), Positives = 334/692 (48%), Gaps = 63/692 (9%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY----KILLNDGT 98
           DL+   P  ++D      I E +    VTI+  I +     L++ RP+    ++ + D  
Sbjct: 48  DLILRIPRRYLDFSRHVSILEAAVNDTVTISCVIDR---INLKRPRPHLSIVEMYVTDTI 104

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV------- 151
           G + + FF  +   L   +  G  + + GK++       M  P     ++ D        
Sbjct: 105 GIMRISFF--RQPWLAKAYHVGDVVALLGKVEYSYGFKCMNSPFIELIHAADARPTDGHA 162

Query: 152 --------------------NFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
                               N  L   I  VY+L  GLS   +++II   L ++  L + 
Sbjct: 163 ADTHAADAHAQDKSALELLPNARLDMHILPVYALCDGLSAAWYRRIIKICLHKILPLVDC 222

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           I    L +      + A   IH P           AR R AY+EL   Q+AL    +   
Sbjct: 223 IPSVYLARNRLMGYSTAIQQIHMP---TSMSAQDAARRRFAYNELFFLQLAL--RARTSV 277

Query: 249 KEIGIPIN--VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           ++I  PI   + G   +   + +PF  +  Q+SA  D+L DM  K  M R+L GDVG+GK
Sbjct: 278 EDIQDPIQHCINGSHLKNFYKALPFELSAEQQSAAHDLLHDMQAKTCMNRLLLGDVGTGK 337

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+V  +  A   +   QA ++AP  +LAQQ+ E I        I   ++T    ++ R  
Sbjct: 338 TVVCALGFAVCADTFTQAAMLAPTSVLAQQYAEKIGTLLTKLSISWALLTSATTKSERAD 397

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            L ++  G   +I GT +L  D +Q++KL  +++DEQHRFGV QRL L QK+    +L M
Sbjct: 398 ILSQLQTGSVQVIFGTTSLLSDDVQFHKLSYIVIDEQHRFGVHQRLALRQKSPFADLLAM 457

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL L+  GD+  S I  KP     + T ++    +    + +   + +G++AY
Sbjct: 458 SATPIPRTLALSFYGDLTCSFIKHKPFSTAKVTTKVLANENVSVAYDAVAACIEQGQQAY 517

Query: 487 WICPQIEEKKES--------NFRSVVERFNSLHEHFTS---------SIAIIHGRMSDID 529
            ICP I+ +           N +S  +  +S  + F S          I ++ GRM   +
Sbjct: 518 IICPLIDNQDARTTVDDIAPNAQSSAQTLHSAQQTFESLKRSSFSAYRIGLLTGRMDSDE 577

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+ VM  F+     +L+ATT++EVG+DV  A  +II +A+ FGLA LHQLRGRVGRG   
Sbjct: 578 KDRVMSQFRAHKLDVLVATTIVEVGVDVPRACAMIILDADRFGLATLHQLRGRVGRGSLA 637

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           +   L+        +  RL +L+NT DGF ++++DL+ R+EG+ILG +QSG     +   
Sbjct: 638 AQVYLVTASKKHSLARRRLDILENTFDGFELSQKDLELRREGDILGYRQSGTLTLRVCDM 697

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
                L+E A +D   +L  DPDL+ V+ +++
Sbjct: 698 VRDMDLIEAAHRDVGELLDGDPDLSQVQHRAL 729


>gi|41409107|ref|NP_961943.1| hypothetical protein MAP3009c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397927|gb|AAS05557.1| RecG [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 738

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 202/614 (32%), Positives = 325/614 (52%), Gaps = 69/614 (11%)

Query: 86  KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145
           K+  ++I L  G  ++T  FF      LK    EG K+ ++G++   KN + + HP ++ 
Sbjct: 79  KKVCHRITLGAGRNKVTATFF--NANYLKKGLTEGTKVMLSGEVGFFKNVMQLTHPAFLI 136

Query: 146 HNSQDVN-----------------------------FPLIEAVYSLPTGLSVDLFKKIIV 176
            +S D                               FP+  A   +    S D+F  + +
Sbjct: 137 LDSPDGRNKGTRSLKNIANASGASGEAVLDAYERHFFPIYPASTKMQ---SWDIFSCVRL 193

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
             L  L  +P+ + + L  K       +A   IH    A++      ARERL +DE +  
Sbjct: 194 -VLDVLDPVPDPLPEPLRAKFDLVCEDQALRDIH---LAENEARRQRARERLTFDEAVGL 249

Query: 237 QIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q AL+  R     E G P       +A ++LR +PF  T  Q   + D+L D     R L
Sbjct: 250 QWALVARRHGELSESGPPAPPRPDGLAAELLRRLPFELTAGQREVL-DVLSDGLASTRPL 308

Query: 296 -RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY---------- 344
            R+LQG+VGSGKT+V+++AM   V+AG Q  ++AP  +LA QH   I+            
Sbjct: 309 NRLLQGEVGSGKTIVSVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMAGQL 368

Query: 345 -TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
              +    + +++G+M  A +++  + +A GQ  I++GTHAL QD+++++ L +V+VDEQ
Sbjct: 369 GGADNATRLALLSGSMTAAQKKQVRDEVAGGQVGIVVGTHALLQDAVEFHNLGMVVVDEQ 428

Query: 404 HRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           HRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E P GR+PI +
Sbjct: 429 HRFGVEQRDRLRAKARPGVTPHLLVMTATPIPRTVALTVYGDLETSTLRELPRGRQPITS 488

Query: 461 VIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS----VVERFNSLHE 512
            +I +      +     R+   ++ G++AY +  +I+E  +           E    L+ 
Sbjct: 489 NVIFVKDKPAWLGRAWRRIGEEVAAGRQAYVVAARIDESDDDGAADQNAKAPETAEGLYA 548

Query: 513 HFTSS------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              S       + ++HGR+S  +K++VM +F+ G   +L+ TTVIEVG+DV +A+++++ 
Sbjct: 549 RLRSQELAQLRLGLMHGRLSAEEKDAVMAAFRAGDIDVLVCTTVIEVGVDVPNATVMLVM 608

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           +A+ FG++QLHQLRGR+GRGE  S C+          +  RL+ +  T DGF +A+ DLK
Sbjct: 609 DADRFGISQLHQLRGRIGRGEHPSLCLFASWAAPDSPAGRRLTAVAETMDGFALADLDLK 668

Query: 627 QRKEGEILGIKQSG 640
           +R+EG++LG  QSG
Sbjct: 669 ERREGDVLGRNQSG 682


>gi|330873209|gb|EGH07358.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 344

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 153/326 (46%), Positives = 215/326 (65%), Gaps = 6/326 (1%)

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           + G +    R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L
Sbjct: 4   LAGKLKGKARATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLAL 62

Query: 415 TQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            +K       PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  E
Sbjct: 63  RKKGVGGLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLE 122

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDID 529
           V+ER++   +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +
Sbjct: 123 VVERVRAACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAE 182

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K ++M  FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +
Sbjct: 183 KAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAV 242

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+LLYHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A  
Sbjct: 243 SHCVLLYHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADL 302

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTS 675
                LL   R  A+ +L + P   S
Sbjct: 303 MRDADLLPAVRDAAQALLERWPQHVS 328


>gi|229820092|ref|YP_002881618.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
 gi|229566005|gb|ACQ79856.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
           12333]
          Length = 748

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 225/688 (32%), Positives = 352/688 (51%), Gaps = 65/688 (9%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL-----NDG 97
           DLL ++P  + +      +SE++    VTI   ++Q SS  +++R   K ++      DG
Sbjct: 44  DLLSHYPRRYAEPGRLTTMSELTLGEHVTI---VAQVSSVGVRRRNRGKGMIVEGVITDG 100

Query: 98  TGEITLLFFYRKTEMLKNVFFE---GRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNF 153
              ++L+FF     M   +  +   G     TG + + + ++ + HP Y    +  D   
Sbjct: 101 VSRMSLVFFAPYAGMAHTIESQLPVGATALFTGTVNRYQGKLQLAHPSYRAIEDPDDEAE 160

Query: 154 PLIEAVYSLP---TGLSVDLFK-----KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEA 205
            L++A   +P      ++D  K     + +++ L R  V P+ +  ++ + +       A
Sbjct: 161 ALVDASKPIPIYPASAAIDSLKIQAAIRTVLDPLRREDV-PDPVPDEVRRAQQLLGRFAA 219

Query: 206 FNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE--GKIAQ 263
              +H P      E    A+  L Y+E    Q AL   R +   E          G +A 
Sbjct: 220 LQQVHVPVT---MEEAYRAQAALRYEEAFVLQAALARRRAEAAAEPATARPAAAVGLLAA 276

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
              R +PF+ T  Q      +  +++    M R+LQG+VGSGKT+VAL AM   V+AGGQ
Sbjct: 277 FDAR-LPFTLTDGQRDVGVVLADELAASVPMQRLLQGEVGSGKTVVALRAMLQVVDAGGQ 335

Query: 324 AVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIA 372
           A ++AP  +LA QH   I                +    V ++TG+   A RR+AL   A
Sbjct: 336 AALLAPTEVLAAQHARTIAAMLGPLAEGGMLTGADGATRVALLTGSQSAAQRRQALAEAA 395

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPI 431
            G A I++GTHAL Q+ +Q+  L LV+VDEQHRFGV+QR  L  K  T+PH+L+MTATPI
Sbjct: 396 SGAAGIVVGTHALIQEHVQFADLGLVVVDEQHRFGVEQRDALRAKGRTSPHLLVMTATPI 455

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWI 488
           PRT+ +T  GD++ S +TE PAGR  + T ++P +    +     R+   ++ G +A+ +
Sbjct: 456 PRTVAMTIFGDLESSTLTEIPAGRAGVSTHVVPADNAAWVARTWSRIAEEVAGGHRAFVV 515

Query: 489 CPQIEE-------------KKESNFRS---------VVERFNSLHEHFTSSIAIIHGRMS 526
           CP+I +               ES   S         VV +           I ++HGR++
Sbjct: 516 CPRISDTLTEPADVVDHLADDESGPESRHSIAAVEDVVAQLRGEPALAGVEIGMLHGRLT 575

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              K++ M  F +G   +L+ TTVIEVG+DV +A+++ + +A+ FGL+QLHQLRGRVGRG
Sbjct: 576 PDVKDAAMADFSSGKVPVLVTTTVIEVGVDVPEATVMAVLDADRFGLSQLHQLRGRVGRG 635

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            + + C+LL H      +  RL+ L  T DGF +AE DL+ R+EG++LG  QSG    L 
Sbjct: 636 SDPAVCLLLTHADPETPTGKRLAALAATTDGFELAEVDLRDRREGDVLGAAQSGRTNSLK 695

Query: 647 AQPELHD-SLLEIARKDAKHILTQDPDL 673
               + D  ++E AR DA+ ++T DP L
Sbjct: 696 LLRVVQDRRVIERARTDARAVVTADPSL 723


>gi|118462797|ref|YP_882989.1| ATP-dependent DNA helicase RecG [Mycobacterium avium 104]
 gi|118164084|gb|ABK64981.1| ATP-dependent DNA helicase RecG [Mycobacterium avium 104]
          Length = 738

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 202/614 (32%), Positives = 324/614 (52%), Gaps = 69/614 (11%)

Query: 86  KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145
           K+  ++I L  G  ++T  FF      LK    EG K+ ++G++   KN + + HP ++ 
Sbjct: 79  KKVCHRITLGAGRNKVTATFF--NANYLKKGLTEGTKVMLSGEVGFFKNVMQLTHPAFLI 136

Query: 146 HNSQDVN-----------------------------FPLIEAVYSLPTGLSVDLFKKIIV 176
            +S D                               FP+  A   +    S D+F  + +
Sbjct: 137 LDSPDGRNKGTRSLMNIANASGASGEEVLDAYERHFFPIYPASTKMQ---SWDIFSCVRL 193

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
             L  L  +P+ + + L  K       +A   IH    A+       ARERL +DE +  
Sbjct: 194 -VLDVLDPVPDPLPEPLRAKFDLVCEDQALRDIH---LAESEARRQRARERLTFDEAVGL 249

Query: 237 QIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q AL+  R     E G P       +A ++LR +PF  T  Q   + D+L D     R L
Sbjct: 250 QWALVARRHGELSESGPPAPPRPDGLAAELLRRLPFELTAGQREVL-DVLSDGLASTRPL 308

Query: 296 -RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY---------- 344
            R+LQG+VGSGKT+V+++AM   V+AG Q  ++AP  +LA QH   I+            
Sbjct: 309 NRLLQGEVGSGKTIVSVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMAGQL 368

Query: 345 -TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
              +    + +++G+M  A +++  + +A GQ  I++GTHAL QD+++++ L +V+VDEQ
Sbjct: 369 GGADNATRLALLSGSMTAAQKKQVRDEVAGGQVGIVVGTHALLQDAVEFHNLGMVVVDEQ 428

Query: 404 HRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           HRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E P GR+PI +
Sbjct: 429 HRFGVEQRDRLRAKARPGVTPHLLVMTATPIPRTVALTVYGDLETSTLRELPRGRQPITS 488

Query: 461 VIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS----VVERFNSLHE 512
            +I +      +     R+   ++ G++AY +  +I+E  +           E    L+ 
Sbjct: 489 NVIFVKDKPAWLGRAWRRIGEEVAAGRQAYVVAARIDESDDDGAADQNAKAPETAEGLYA 548

Query: 513 HFTSS------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              S       + ++HGR+S  +K++VM +F+ G   +L+ TTVIEVG+DV +A+++++ 
Sbjct: 549 RLRSQELAQLRLGLMHGRLSAEEKDAVMAAFRAGDIDVLVCTTVIEVGVDVPNATVMLVM 608

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           +A+ FG++QLHQLRGR+GRGE  S C+          +  RL+ +  T DGF +A+ DLK
Sbjct: 609 DADRFGISQLHQLRGRIGRGEHPSLCLFASWAAPDSPAGRRLTAVAETMDGFALADLDLK 668

Query: 627 QRKEGEILGIKQSG 640
           +R+EG++LG  QSG
Sbjct: 669 ERREGDVLGRNQSG 682


>gi|223888856|ref|ZP_03623447.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 64b]
 gi|223885672|gb|EEF56771.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 64b]
          Length = 686

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 207/620 (33%), Positives = 329/620 (53%), Gaps = 28/620 (4%)

Query: 43  DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           DL+ + P  + DR      P  S++    ++T+   +  H  F    ++  K+ +     
Sbjct: 34  DLIEFFPVKYEDRQNIQTFPDFSKVKSCDMMTVFTVLG-HKKFGDSSKKNLKLTVKSINE 92

Query: 100 E-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI--FHNSQDVNFPLI 156
           E   +L F R    L+NVF   +K  +  K        +    ++    ++ +   F  I
Sbjct: 93  EPFEILLFNRA--FLENVFKIDKKFYIYSKFTYNDYSGLWSCSNFDSEVYSDKPERFKKI 150

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKA 215
             VYSL  GL+       + EAL       +  I + L++K S  S+++A   IH P   
Sbjct: 151 LPVYSLTEGLTSKKISLYVKEALEYFFKFGQTDIPRFLIEKYSLLSLSDALKEIHFP--- 207

Query: 216 KDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
              E    A++ L Y E+   Q       + +L R+  KK++         + +K++ ++
Sbjct: 208 SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKILFRE--KKDLS------KDLLEKVVSSL 259

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+ +I +I  D++    M R+LQGDVGSGKTLVAL++    +EAG Q   MAP
Sbjct: 260 PFELTEDQKISINEIFFDLNSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAFMAP 319

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+ +        I + ++TG++ +  + +ALE I +G + +I+GTHA+F +S
Sbjct: 320 TDLLARQHYDNLSNILAPFNISMTLLTGSLRKKDKEQALESIRNGTSGLIVGTHAIFYES 379

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            ++ +L  VI+DEQH+FGV QR +L  K     +LLM+ATPIPR+  LT  GD+++S I 
Sbjct: 380 TEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEVSFIK 439

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P GR PI T +      D+V E L+  L +G + Y++ P I   ++   + V      
Sbjct: 440 TLPKGRLPITTYLARHGNEDKVYEFLRKELLKGHQVYFVYPLISSSEKFELKDVNNMCLK 499

Query: 510 LHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L E F   +  ++H ++    KE +M +F +    +L+AT+VIEVGID  +A+ +++E+A
Sbjct: 500 LKEVFGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVVEHA 559

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E FGL+ LHQ+RGRVGR    S   LLY  PL+     RL  +K   DGF IAEEDL+ R
Sbjct: 560 ERFGLSTLHQIRGRVGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDLRLR 619

Query: 629 KEGEILGIKQSGMPKFLIAQ 648
             G + G++Q+G  K  IA 
Sbjct: 620 GPGNLFGLEQAGYLKLKIAN 639


>gi|226321047|ref|ZP_03796590.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 29805]
 gi|226233571|gb|EEH32309.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 29805]
          Length = 686

 Score =  311 bits (796), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 207/620 (33%), Positives = 329/620 (53%), Gaps = 28/620 (4%)

Query: 43  DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           DL+ + P  + DR      P  S++    ++T+   +  H  F    ++  K+ +     
Sbjct: 34  DLIEFFPVKYEDRQNIQTFPDFSKVKSCDMMTVFTVLG-HKKFGDSSKKNLKLTVKSINE 92

Query: 100 E-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI--FHNSQDVNFPLI 156
           E   +L F R    L+NVF   +K  +  K        +    ++    ++ +   F  I
Sbjct: 93  EPFEILLFNRA--FLENVFKIDKKFYIYSKFTYNDYSGLWSCSNFDSEVYSDKPERFKKI 150

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKA 215
             VYSL  GL+       + EAL       +  I + L++K S  S+++A   IH P   
Sbjct: 151 LPVYSLTEGLTSKKISLYVKEALEYFFKFGQTDIPRFLIEKYSLLSLSDALKEIHFP--- 207

Query: 216 KDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
              E    A++ L Y E+   Q       + +L R+  KK++         + +K++ ++
Sbjct: 208 SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKILFRE--KKDLS------KDLLEKVVSSL 259

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+ +I +I  D++    M R+LQGDVGSGKTLVAL++    +EAG Q   MAP
Sbjct: 260 PFELTEDQKISIDEIFFDLNSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAFMAP 319

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+ +        I + ++TG++ +  + +ALE I +G + +I+GTHA+F +S
Sbjct: 320 TDLLARQHYDNLSNILAPFNISMTLLTGSLRKKDKEQALESIRNGTSGLIVGTHAIFYES 379

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            ++ +L  VI+DEQH+FGV QR +L  K     +LLM+ATPIPR+  LT  GD+++S I 
Sbjct: 380 TEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEVSFIK 439

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P GR PI T +      D+V E L+  L +G + Y++ P I   ++   + V      
Sbjct: 440 TLPKGRLPITTYLARHGNEDKVYEFLRKELLKGHQVYFVYPLISSSEKFELKDVNNMCLK 499

Query: 510 LHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L E F   +  ++H ++    KE +M +F +    +L+AT+VIEVGID  +A+ +++E+A
Sbjct: 500 LKEVFGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVVEHA 559

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E FGL+ LHQ+RGRVGR    S   LLY  PL+     RL  +K   DGF IAEEDL+ R
Sbjct: 560 ERFGLSTLHQIRGRVGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDLRLR 619

Query: 629 KEGEILGIKQSGMPKFLIAQ 648
             G + G++Q+G  K  IA 
Sbjct: 620 GPGNLFGLEQAGYLKLKIAN 639


>gi|15594926|ref|NP_212715.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi B31]
 gi|195941715|ref|ZP_03087097.1| DNA recombinase (recG) [Borrelia burgdorferi 80a]
 gi|216264673|ref|ZP_03436665.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 156a]
 gi|218249676|ref|YP_002375089.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi ZS7]
 gi|221218004|ref|ZP_03589470.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 72a]
 gi|224532735|ref|ZP_03673352.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi WI91-23]
 gi|224533522|ref|ZP_03674111.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi CA-11.2a]
 gi|225549658|ref|ZP_03770624.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 118a]
 gi|226321887|ref|ZP_03797413.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi Bol26]
 gi|3914613|sp|O51528|RECG_BORBU RecName: Full=ATP-dependent DNA helicase recG
 gi|2688498|gb|AAC66942.1| DNA recombinase (recG) [Borrelia burgdorferi B31]
 gi|215981146|gb|EEC21953.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 156a]
 gi|218164864|gb|ACK74925.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi ZS7]
 gi|221191952|gb|EEE18173.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 72a]
 gi|224512353|gb|EEF82737.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi WI91-23]
 gi|224513195|gb|EEF83557.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi CA-11.2a]
 gi|225369935|gb|EEG99382.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 118a]
 gi|226233076|gb|EEH31829.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi Bol26]
 gi|312148401|gb|ADQ31060.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi JD1]
 gi|312149549|gb|ADQ29620.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi N40]
          Length = 686

 Score =  311 bits (796), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 207/620 (33%), Positives = 329/620 (53%), Gaps = 28/620 (4%)

Query: 43  DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           DL+ + P  + DR      P  S++    ++T+   +  H  F    ++  K+ +     
Sbjct: 34  DLIEFFPVKYEDRQNIQTFPDFSKVKSCDMMTVFTVLG-HKKFGDSSKKNLKLTVKSINE 92

Query: 100 E-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI--FHNSQDVNFPLI 156
           E   +L F R    L+NVF   +K  +  K        +    ++    ++ +   F  I
Sbjct: 93  EPFEILLFNRA--FLENVFKIDKKFYIYSKFTYNDYSGLWSCSNFDSEVYSDKPERFKKI 150

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKA 215
             VYSL  GL+       + EAL       +  I + L++K S  S+++A   IH P   
Sbjct: 151 LPVYSLTEGLTSKKISLYVKEALEYFFKFGQTDIPRFLIEKYSLLSLSDALKEIHFP--- 207

Query: 216 KDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
              E    A++ L Y E+   Q       + +L R+  KK++         + +K++ ++
Sbjct: 208 SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKILFRE--KKDLS------KDLLEKVVSSL 259

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+ +I +I  D++    M R+LQGDVGSGKTLVAL++    +EAG Q   MAP
Sbjct: 260 PFELTEDQKISIDEIFFDLNSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAFMAP 319

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+ +        I + ++TG++ +  + +ALE I +G + +I+GTHA+F +S
Sbjct: 320 TDLLARQHYDNLSNILAPFNISMTLLTGSLRKKDKEQALESIRNGTSGLIVGTHAIFYES 379

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            ++ +L  VI+DEQH+FGV QR +L  K     +LLM+ATPIPR+  LT  GD+++S I 
Sbjct: 380 TEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEVSFIK 439

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P GR PI T +      D+V E L+  L +G + Y++ P I   ++   + V      
Sbjct: 440 TLPKGRLPITTYLARHGNEDKVYEFLRKELLKGHQVYFVYPLISSSEKFELKDVNNMCLK 499

Query: 510 LHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L E F   +  ++H ++    KE +M +F +    +L+AT+VIEVGID  +A+ +++E+A
Sbjct: 500 LKEVFGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVVEHA 559

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E FGL+ LHQ+RGRVGR    S   LLY  PL+     RL  +K   DGF IAEEDL+ R
Sbjct: 560 ERFGLSTLHQIRGRVGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDLRLR 619

Query: 629 KEGEILGIKQSGMPKFLIAQ 648
             G + G++Q+G  K  IA 
Sbjct: 620 GPGNLFGLEQAGYLKLKIAN 639


>gi|295696051|ref|YP_003589289.1| DEAD/DEAH box helicase domain protein [Bacillus tusciae DSM 2912]
 gi|295411653|gb|ADG06145.1| DEAD/DEAH box helicase domain protein [Bacillus tusciae DSM 2912]
          Length = 689

 Score =  311 bits (796), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 219/695 (31%), Positives = 358/695 (51%), Gaps = 44/695 (6%)

Query: 4   SFLNPLFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           ++ +PL  P++   GVG + +  L    I + G        DLL+++P  + D   R + 
Sbjct: 7   AWQDPLARPVTFLPGVGPRRARALESLGIRSIG--------DLLYHYPFRYEDLRLR-RP 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            E  + R V + G ++         R P   +  D  G      ++R+  +L+ +    R
Sbjct: 58  GEWEDGRRVAVEGTVAGKPRVSRGGRVPVVAVPMDVQGIRIHAVWFRQAYVLERLT-RYR 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           +  + G+ +  +  +++ H   +        V+   I  VY     L     +  I  AL
Sbjct: 117 RWRLAGRWQAARRSLVVEHMEPVSEGGAGHSVHAGRIVPVYQTSGDLRPKWLRTWIASAL 176

Query: 180 SRL------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
                    P+   W  K  L  K     AEA   IH PR   D+E    ARERL Y+E 
Sbjct: 177 KEAEPHLVDPLPWRWRAKLGLMDK-----AEALREIHFPR---DWERLGRARERLVYEEC 228

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           L  Q+ L   R + K      + +  +  ++ L  +PFSPT+ Q   ++ +  +++    
Sbjct: 229 LRFQLPLQCARWRQKSRRAPALRLTRREWEEFLAALPFSPTEGQRRVLRAVAAEIAGHAP 288

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVGSGKT++A  A+ AA  +GGQ V++AP  ILA+QH   +  +       V 
Sbjct: 289 MRRLILGDVGSGKTVIAAAALFAAAMSGGQGVLLAPTEILAEQHARTLSGWFAGFSFPVW 348

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG   +A R +    I+ G+  I++GTHA+    + Y  L + + DEQ RFGV QR+ 
Sbjct: 349 LLTGGTDRAERTRCFADISAGRPGILVGTHAVL-GHVPYSALRVAVCDEQQRFGVVQRMA 407

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEV 471
           L +   + H+L M+ATPIPRTL +   GD+D+S +  +P   GR+   T  +P+ R +EV
Sbjct: 408 LLRPNESIHLLSMSATPIPRTLAMALFGDVDVSFLPARPETPGRR--VTRWLPLEREEEV 465

Query: 472 IERLKVVLSEGKKAYWICPQI---EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSD 527
           +  L+  LS G++AY + P I    E+ ES  + V+  F+   E     ++ ++HGRMS 
Sbjct: 466 VLELRQRLSRGERAYVVAPAIGRPGEQPESK-KDVLSLFDWFREQLAGFAVGLLHGRMSP 524

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +KE VM +F  G  + L+ATTV+EVG+DV +A++++I +AE FGL+QLHQLRGR+GR  
Sbjct: 525 GEKERVMRAFAEGAIQALVATTVVEVGVDVPEATMMVIYHAERFGLSQLHQLRGRIGRSG 584

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           + + C +L   PL+  +  R+   +   DG+L+A++DL+ R  G+  G+ QSG P F + 
Sbjct: 585 QDAVCFVLTG-PLTDIARQRIEAFQAVNDGYLLAKKDLELRGPGDWAGLAQSGWPDFALF 643

Query: 648 QPELHDSLLEIARKDAKHILTQD-----PDLTSVR 677
            P   +  +  A+  A H++        P+  S+R
Sbjct: 644 DPIRDEIWMRRAKHHAHHLVRSREFWLLPEFASLR 678


>gi|225548726|ref|ZP_03769773.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 94a]
 gi|225370756|gb|EEH00192.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 94a]
          Length = 686

 Score =  311 bits (796), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 207/620 (33%), Positives = 329/620 (53%), Gaps = 28/620 (4%)

Query: 43  DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           DL+ + P  + DR      P  S++    ++T+   +  H  F    ++  K+ +     
Sbjct: 34  DLIEFFPVKYEDRQNIQTFPDFSKVKSCDMMTVFTVLG-HKKFGDSSKKNLKLTVKSINE 92

Query: 100 E-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI--FHNSQDVNFPLI 156
           E   +L F R    L+NVF   +K  +  K        +    ++    ++ +   F  I
Sbjct: 93  EPFEILLFNRA--FLENVFKIDKKFYIYSKFTYNDYSGLWSCSNFDSEVYSDKPERFKKI 150

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKA 215
             VYSL  GL+       + EAL       +  I + L++K S  S+++A   IH P   
Sbjct: 151 LPVYSLTEGLTSKKISLYVKEALEYFFKFGQTDIPRFLIEKYSLLSLSDALKEIHFP--- 207

Query: 216 KDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
              E    A++ L Y E+   Q       + +L R+  KK++         + +K++ ++
Sbjct: 208 SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKILFRE--KKDLS------KDLLEKVVSSL 259

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+ +I +I  D++    M R+LQGDVGSGKTLVAL++    +EAG Q   MAP
Sbjct: 260 PFELTEDQKISIDEIFFDLNSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAFMAP 319

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+ +        I + ++TG++ +  + +ALE I +G + +I+GTHA+F +S
Sbjct: 320 TDLLARQHYDNLSNILAPFNISMTLLTGSLRKKDKEQALESIRNGTSGLIVGTHAIFYES 379

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            ++ +L  VI+DEQH+FGV QR +L  K     +LLM+ATPIPR+  LT  GD+++S I 
Sbjct: 380 TEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEVSFIK 439

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P GR PI T +      D+V E L+  L +G + Y++ P I   ++   + V      
Sbjct: 440 TLPKGRLPITTYLARHGNEDKVYEFLRKELLKGHQVYFVYPLISSSEKFELKGVNNMCLK 499

Query: 510 LHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L E F   +  ++H ++    KE +M +F +    +L+AT+VIEVGID  +A+ +++E+A
Sbjct: 500 LKEVFGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVVEHA 559

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E FGL+ LHQ+RGRVGR    S   LLY  PL+     RL  +K   DGF IAEEDL+ R
Sbjct: 560 ERFGLSTLHQIRGRVGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDLRLR 619

Query: 629 KEGEILGIKQSGMPKFLIAQ 648
             G + G++Q+G  K  IA 
Sbjct: 620 GPGNLFGLEQAGYLKLKIAN 639


>gi|315083489|gb|EFT55465.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL027PA2]
          Length = 590

 Score =  311 bits (796), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 185/515 (35%), Positives = 282/515 (54%), Gaps = 34/515 (6%)

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPEW    L Q+   PS+ EA++ IH P    + +  +   ERL ++E +A Q+ + + R
Sbjct: 60  LPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTMAVRR 112

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +  ++ +  +    +G +       +PF+PT  Q+   + I  D+S    M R+LQG+VG
Sbjct: 113 RSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQGEVG 172

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------TQIIV 352
           SGKT VAL AM   V+AG QAV++AP  +LAQQHY  I     +               V
Sbjct: 173 SGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGGGLDAPEISTGV 232

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+M  A  R AL  IA G A II+GTH+L    + Y  + LV+VDEQHRFGV+QR 
Sbjct: 233 ALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGVEQRS 292

Query: 413 KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NR 467
            LT    A PH L++TATPIPRT+ +T  GD+++S + E P GR  ++T ++ +    + 
Sbjct: 293 VLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPAHGSW 352

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS------I 518
           +    +R++     G + + +CP+I      +    R        L     +       +
Sbjct: 353 LTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRRPAAAVEELAPQLATGPLAGLRV 412

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +H R+   +K+ VMD F  G  ++LI+TTVIEVG+DV +A++++I +A+ FG++QLHQ
Sbjct: 413 EALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVSQLHQ 472

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR EG +LG  Q
Sbjct: 473 LRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVLGSSQ 532

Query: 639 SGMPKFLIAQPELHDSLLEIARKD-AKHILTQDPD 672
           +G    L     L  + +  A KD A+  + + PD
Sbjct: 533 AGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 567


>gi|312871492|ref|ZP_07731586.1| putative ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF
           3008A-a]
 gi|311093012|gb|EFQ51362.1| putative ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF
           3008A-a]
          Length = 453

 Score =  310 bits (794), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 168/452 (37%), Positives = 270/452 (59%), Gaps = 5/452 (1%)

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   RM R+LQGD
Sbjct: 6   LLYANDQKNSGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKRMNRLLQGD 65

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   ++T +   
Sbjct: 66  VGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSSTKL 125

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L  K    
Sbjct: 126 NEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGKMV 185

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++  +   L +
Sbjct: 186 DILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQLEQ 245

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G + Y + P I E  + + ++    +  +  +F S  +A++HG+M    K  +MD+F +G
Sbjct: 246 GFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSDIMDAFIHG 305

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
           + K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S CI +  P  
Sbjct: 306 SIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGSTQSYCIFVSDPK- 364

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           + ++  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     + ++   A+
Sbjct: 365 TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINNYNIFTTAQ 424

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           K++K ++ Q+P+L    G+    L  L +Y++
Sbjct: 425 KESKILVHQNPELV---GEEYDFLKLLMEYDD 453


>gi|222623538|gb|EEE57670.1| hypothetical protein OsJ_08114 [Oryza sativa Japonica Group]
          Length = 946

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 203/630 (32%), Positives = 327/630 (51%), Gaps = 77/630 (12%)

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN-------SQDVNFPLIE----AVYSLPTG 165
           + EG    V+GKIKK      +   HY            ++    L++     +Y    G
Sbjct: 320 YKEGDLAYVSGKIKK-----ALTKDHYDLREYTIDMLEEEEQQCTLLDRKPYPIYPSKAG 374

Query: 166 LSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225
           L   L    I  AL  L    + +  ++L + + P++ +A+  IH P+   + ++   AR
Sbjct: 375 LKPSLLSLSISRALKMLTPDIDPMPHEVLVEFNLPNLFDAYMGIHKPKNRDEADF---AR 431

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVE-------------------GKIAQKIL 266
            RL +D+    Q+  L    Q  + +G  +  E                     +A+K+L
Sbjct: 432 RRLIFDDFFYLQLGRLF---QMLEAVGTRVEKEELLLKCKNHELNAVGADEWSPLARKLL 488

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           + +P+  T SQ +A+K+I+ D+ +   M R+LQGDVG GKT+VA +A    + +G QA  
Sbjct: 489 KVLPYLLTPSQLNAVKEIIWDLRRPVPMNRLLQGDVGCGKTVVAFLACMEVISSGFQAAF 548

Query: 327 MAPIGILAQQHYE----FIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           M P  +LA QHYE     ++K+  +  +  + ++TG+      R     +  G+  ++IG
Sbjct: 549 MVPTEVLALQHYEHLTSLLEKFDGDECKPNIALLTGSTSTRESRIIRNGLKTGEIAMVIG 608

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------------------- 418
           TH+L  D  ++  L + ++DEQ RFGV QR +   K                        
Sbjct: 609 THSLIGDKTEFSALRISVIDEQQRFGVVQRGRFNSKLYTPSTKSSDDDTISDENSASEIF 668

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLK 476
            APHVL M+ATPIPRTL L   GD+ +++IT+ P GR+PI+T+ +  N    + V + + 
Sbjct: 669 MAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRQPIETLALEGNDAGFESVFQMMS 728

Query: 477 VVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
             L +G K Y + P IEE ++     +    F+S+ + F      ++HGRM   +K+  +
Sbjct: 729 DELVDGGKVYLVYPIIEESEQLPQLHAAKAEFDSIKQKFEGYPCGLLHGRMRSDEKDGAL 788

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            SF++G  ++L++T VIE+G+DV DAS++++ NAE FG++QLHQLRGRVGRGE  S C+ 
Sbjct: 789 SSFRSGETRILLSTQVIEIGVDVPDASMMVVMNAERFGMSQLHQLRGRVGRGERKSRCVF 848

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHD 653
           L   P   ++  RL VL+ + DGF +A  DL  R  G++LG KQSG +P+F IA+ E+  
Sbjct: 849 LCSTP---SALPRLKVLEKSSDGFYLANADLLLRGPGDLLGKKQSGHLPEFPIARLEIDG 905

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           S+L+ A   A ++L    DL    G  + +
Sbjct: 906 SILQEAHLAALNVLGTSNDLAQFPGLKVEL 935


>gi|309809537|ref|ZP_07703395.1| putative ATP-dependent DNA helicase RecG [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170209|gb|EFO72244.1| putative ATP-dependent DNA helicase RecG [Lactobacillus iners SPIN
           2503V10-D]
          Length = 453

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 168/452 (37%), Positives = 270/452 (59%), Gaps = 5/452 (1%)

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   RM R+LQGD
Sbjct: 6   LLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKRMNRLLQGD 65

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   ++T +   
Sbjct: 66  VGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSSTKL 125

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L  K    
Sbjct: 126 NEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGKMV 185

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++  +   L +
Sbjct: 186 DILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQLEQ 245

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G + Y + P I E  + + ++    +  +  +F S  +A++HG+M    K  +MD+F +G
Sbjct: 246 GFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSDIMDAFIHG 305

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
           + K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S CI +  P  
Sbjct: 306 SIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYCIFVSDPK- 364

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           + ++  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     + ++   A+
Sbjct: 365 TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINNYNIFTTAQ 424

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           K++K ++ Q+P+L    G+    L  L +Y++
Sbjct: 425 KESKILVHQNPELV---GEEYDFLKLLMEYDD 453


>gi|218133743|ref|ZP_03462547.1| hypothetical protein BACPEC_01612 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991118|gb|EEC57124.1| hypothetical protein BACPEC_01612 [Bacteroides pectinophilus ATCC
           43243]
          Length = 494

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 169/475 (35%), Positives = 273/475 (57%), Gaps = 29/475 (6%)

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           +++ +Y L  GLS  +  K + +AL    ++PE +  +L +      I  A   IH P+ 
Sbjct: 18  IMQPIYPLTRGLSNKIVSKAMQQALDIKELVPELLPAELRRSNELAEINFAMRAIHFPKD 77

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
             D+E    AR+RL +DE     + +  M++   ++  +    +     + ++ +P+  T
Sbjct: 78  MNDYE---AARKRLVFDEFFFFMLNVRRMKENNSRQPNLSRIADDARTDEFIKKLPYELT 134

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            +Q+   +++  DM+ +  M R++QGDVGSGKT++A++A+   V AG Q  +M P  +LA
Sbjct: 135 NAQKRTWQEVSSDMNGERLMNRLVQGDVGSGKTIIAVLALMNTVYAGYQGAMMVPTEVLA 194

Query: 335 QQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
           +Q Y+      +KY  N  I V ++ G+M  + ++K  +RIA G+A I+IGTHAL Q  +
Sbjct: 195 RQQYDDTCAMFEKYGIN--INVSLLIGSMTASAKKKERQRIASGEAGIVIGTHALIQAGV 252

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +Y  L LV+ DEQHRFGV QR  LTQK ++ H L+M+ATPIPRTL +   GD+DIS + E
Sbjct: 253 EYANLGLVVTDEQHRFGVHQRESLTQKGSSVHTLVMSATPIPRTLAIIIYGDLDISVMNE 312

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----------- 499
            P+ R PIK  ++  +        ++  +  G +AY ICP +E +++ +           
Sbjct: 313 LPSSRLPIKNAVVGTDYRPNAYRFIENQVQAGHQAYVICPMVEAREDGDVMEDGRGDTFA 372

Query: 500 -------FRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                    +VV+    L ++  SSI +  +HG+M    K+ +M+ F +G  ++L++TTV
Sbjct: 373 NTNMHATLENVVDYTTMLKKNLPSSINVEYLHGKMKPAVKDEIMERFHSGQTQVLVSTTV 432

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           IEVG++V +A++++IENA+ FGLAQLHQLRGRVGRG   S CI +      K  Y
Sbjct: 433 IEVGVNVPNATVMLIENADRFGLAQLHQLRGRVGRGAYQSYCIFVGTSNAKKRKY 487


>gi|226941691|ref|YP_002796765.1| RecG [Laribacter hongkongensis HLHK9]
 gi|226716618|gb|ACO75756.1| RecG [Laribacter hongkongensis HLHK9]
          Length = 685

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 193/546 (35%), Positives = 308/546 (56%), Gaps = 24/546 (4%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           R  DL+ + P  + D      +        V + G I+     Q + R+     L D +G
Sbjct: 22  RRFDLVLHLPLRYEDETQLTPVRAARYGEPVMVEGEITAQQ-VQYKPRKQLVATLADESG 80

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV--NFPLIE 157
           ++ L F +     LK +   G+++   G+++       MVHP       +DV  + PL +
Sbjct: 81  QLILRFLHFYPTHLKQLAV-GQRVRAMGEVRHGYFGDEMVHPKI-----RDVTPDTPLAD 134

Query: 158 ---AVYSLPTGLSVDLFKKIIVEAL--SRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
               VY    G++  + +++I  AL   RL   LPE +  +L         A+A  I+H 
Sbjct: 135 HLTPVYPAVQGVTQLMLRRLIAGALRDERLDDTLPEPMRHEL----GLVPFADAVRILHQ 190

Query: 212 PRK----AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           P      A   +   PA +RL +DELLA Q+++ L  +  +      +   G++ + +L+
Sbjct: 191 PPARMPVAVLADGALPAWQRLKFDELLAQQLSMRLAYRARRAFAAPVLKGNGQLTRALLQ 250

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +PF  T++Q   + +I  D++Q + M R+LQGDVGSGKT+VA +A   A+EAG QA +M
Sbjct: 251 ALPFELTRAQARVMGEISHDLAQSHPMHRLLQGDVGSGKTVVAALAALIAIEAGWQAALM 310

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  ILA+QH+  +  +     I V  ++G++ +  ++ A+E +A G+A + IGTHALFQ
Sbjct: 311 APTEILAEQHHRKLAGWLAPLGIKVVWLSGSLKKKDKQAAIEAMASGEAQLAIGTHALFQ 370

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D + + +L LV++DEQHRFGV QRL LTQK   PH L M+ATPIPRTL ++   D+D+S 
Sbjct: 371 DGVSFTRLGLVLIDEQHRFGVGQRLALTQKGGEPHQLTMSATPIPRTLAMSYFADLDVSV 430

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P GR PI+T +I  +R  +V+  ++  +  G++AYW+CP IEE +    ++ V  F
Sbjct: 431 IDELPPGRTPIQTKLISTSRRHDVMAAIRKEIDAGRQAYWVCPLIEESETLELQNAVATF 490

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             L E      + ++HGR+   +K +VM +F+    +LL+ATTVIEVG+DV +A++++IE
Sbjct: 491 EELAESLPGIVVGLVHGRLKPDEKAAVMAAFQQNVVQLLVATTVIEVGVDVPNATLMVIE 550

Query: 567 NAEHFG 572
           +AE  G
Sbjct: 551 HAERMG 556


>gi|224108331|ref|XP_002314808.1| predicted protein [Populus trichocarpa]
 gi|222863848|gb|EEF00979.1| predicted protein [Populus trichocarpa]
          Length = 888

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 204/634 (32%), Positives = 327/634 (51%), Gaps = 75/634 (11%)

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY--------IFHNSQDVN 152
            T L F +K E    +   G  + V+GK++ +  +      HY        +  + +D +
Sbjct: 248 FTCLPFLKKVEAKHKL---GDVVCVSGKVRTMSTK----GDHYEIREYNIDVLEDREDSS 300

Query: 153 FPLIEA----VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
             ++E     +Y    GL+ D  +  I  A+  L    + I K+++Q      + EA+  
Sbjct: 301 -SIVEGRPYPIYPSKGGLNPDFLRDTISRAVRALLADVDPIPKEIIQDFGLLRLHEAYIG 359

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALL---------------LMRKQFKKEI-G 252
           IH P+ A + +    AR+RL +DE    Q+  L               L+ K  K E+  
Sbjct: 360 IHQPKNADEADL---ARKRLIFDEFFYLQLGRLFQMLEGLGSRMEKDGLLDKYSKPELNA 416

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           + +     + +K L+ +P+S T SQ SA   I+ D+ +   M R+LQGDVG GKT+VA +
Sbjct: 417 VYVEEWSNLTKKFLKALPYSLTSSQLSASSQIIWDLKRPVPMNRLLQGDVGCGKTIVAFL 476

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----TQIIVEIITGNMPQAHRRKA 367
           A    + +G QA  M P  +LA QHYE +    +      ++  V ++TG+ P    R  
Sbjct: 477 ACMEVIGSGYQAAFMVPTELLAIQHYEQLLNLLETMGEVQSKPSVALLTGSTPSKQSRMI 536

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--------- 418
              +  G   ++IGTH+L  +++++  L + +VDEQ RFGV QR +   K          
Sbjct: 537 RRDLQSGDISMVIGTHSLISENVEFSALRIAVVDEQQRFGVIQRGRFNSKLYHSPLSSRM 596

Query: 419 --------------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
                          APHVL M+ATPIPRTL L   GD+ +++IT+ P GR P++T I  
Sbjct: 597 SASNTDTSSEGDFHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRVPVETYIFE 656

Query: 465 INR--IDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAI 520
            N    ++V + ++  L  G + Y + P IE+ ++    R+       +   F   +  +
Sbjct: 657 GNYDGFEDVYKMMRDELEAGGRVYLVYPVIEQSEQLPQLRAAAADLEVISHRFQDYNCGL 716

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG+M   DK+  +  F++G   +L++T VIE+G+DV DAS++++ NAE FG+AQLHQLR
Sbjct: 717 LHGKMKSDDKDEALKRFRSGVTHILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLR 776

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG   S C+L+     + +S  RL VL+ + DGF +A  DL  R  G++LG KQSG
Sbjct: 777 GRVGRGARKSKCLLVAS---TTSSLDRLKVLEKSSDGFYLANMDLLLRGPGDLLGKKQSG 833

Query: 641 -MPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            +P+F IA+ E+  ++L+ A   A  +L +  DL
Sbjct: 834 HLPEFPIARLEIDGNILQEAHAAALKVLGESHDL 867


>gi|225552492|ref|ZP_03773432.1| ATP-dependent DNA helicase RecG [Borrelia sp. SV1]
 gi|225371490|gb|EEH00920.1| ATP-dependent DNA helicase RecG [Borrelia sp. SV1]
          Length = 686

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 206/620 (33%), Positives = 327/620 (52%), Gaps = 28/620 (4%)

Query: 43  DLLFYHPSSFIDRH---YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           DL+ + P  + DR      P  S++    ++T+   +  H  F    ++  K+ +     
Sbjct: 34  DLIEFFPVKYEDRQNIQTFPDFSKVKSCDMMTVFTVLG-HKKFGDSSKKNLKLTVKSINE 92

Query: 100 E-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI--FHNSQDVNFPLI 156
           E   +L F R    L+NVF   +K  +  K        +    ++    ++ +   F  I
Sbjct: 93  EPFEILLFNRA--FLENVFKIDKKFYIYSKFTYNDYSGLWSCSNFDSEVYSDKPERFKKI 150

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKA 215
             VYSL  GL+       + EAL       +  I + L++K S  S+++A   IH P   
Sbjct: 151 LPVYSLTEGLTSKKISLYVKEALEYFFKFGQTDIPRFLIEKYSLLSLSDALKEIHFP--- 207

Query: 216 KDFEWTSPARERLAYDELLAGQI------ALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
              E    A++ L Y E+   Q       + +L R+  KK++         + +K++ ++
Sbjct: 208 SSLEMLEKAKKTLIYREIFLLQFFSRYRSSKILFRE--KKDLS------KDLLEKVVSSL 259

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q+ +I +I  D++    M R+LQGDVGSGKTLVAL++    +EAG Q   MAP
Sbjct: 260 PFELTGDQKISIDEIFFDLNSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAFMAP 319

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+ +        I + ++TG++ +  + + LE I +G + +I+GTHA+F +S
Sbjct: 320 TDLLARQHYDNLSNILAPFNISMTLLTGSLRKRDKEQTLESIRNGTSGLIVGTHAIFYES 379

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            ++ +L  VI+DEQH+FGV QR +L  K     +LLM+ATPIPR+  LT  GD+++S I 
Sbjct: 380 TEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEVSFIK 439

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P GR PI T +      D+V E L+  L +G + Y++ P I   ++   + V      
Sbjct: 440 TLPKGRLPITTYLARHGNEDKVYEFLRKELLKGHQVYFVYPLISSSEKFELKDVNNMCLK 499

Query: 510 LHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L E F   +  ++H ++    KE +M +F +    +L+AT+VIEVGID  +A+ +++E+A
Sbjct: 500 LKEVFGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVVEHA 559

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E FGL+ LHQ+RGRVGR    S   LLY  PL+     RL  +K   DGF IAEEDL+ R
Sbjct: 560 ERFGLSTLHQIRGRVGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENLDGFKIAEEDLRLR 619

Query: 629 KEGEILGIKQSGMPKFLIAQ 648
             G + G++Q+G  K  IA 
Sbjct: 620 GPGNLFGLEQAGYLKLKIAN 639


>gi|145350405|ref|XP_001419597.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579829|gb|ABO97890.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 539

 Score =  307 bits (786), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 199/500 (39%), Positives = 292/500 (58%), Gaps = 29/500 (5%)

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
           LL +    S +EA   IH PR   + E  + ARERLA++EL+  Q+ALL  R + +    
Sbjct: 7   LLAELGLLSHSEAVKNIHRPR---NVEAVAQARERLAFEELVLLQVALLQERSRLQ---A 60

Query: 253 IPIN--VEG------KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +P++   EG       +  ++   +PF+ T+SQES++++IL DM+    MLR+LQGDVG 
Sbjct: 61  LPVSESTEGVCIVGTALTDELRSELPFALTRSQESSLEEILSDMAGPAPMLRLLQGDVGC 120

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII--VEIITGNMPQA 362
           GKT+VA +A+ AAV AG Q   MAP  +LA QH+  +       +    V ++TG+   A
Sbjct: 121 GKTVVAAMALLAAVGAGHQGAFMAPTEVLATQHHRVLTDLLSQMRDPPKVALLTGSTKTA 180

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-AP 421
            R + LE +  G+  II+GTHAL  + + +  L + +VDEQHRFGV+QR  L  K    P
Sbjct: 181 ERAQILEDLNDGKIGIIVGTHALIHEKVVFSSLGIAVVDEQHRFGVEQRAGLLAKGKLPP 240

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H+L M+ATPIPRTL +T  G++ +S I EKPAGR PI T +  ++   +  + +   +S 
Sbjct: 241 HMLTMSATPIPRTLAMTKFGEMALSVIDEKPAGRLPIITTVCGVDEHSQAYDSMCEEVSR 300

Query: 482 GKKAYWICPQIEEKKESNFRSV---VERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           G +AY I   + E   S    V    E +  L   + +    ++HG++   +K + ++ F
Sbjct: 301 GGQAYVILRLVNESGSSRMSEVKGAEEEYARLVSKYPNVRFGLLHGQLGADEKAAALEKF 360

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G  + L+AT+V+EVG+DV +AS+IIIE+A+ FGLA LHQLRGRVGRG   S C LL+ 
Sbjct: 361 SSGETQALVATSVVEVGVDVPNASVIIIEDADGFGLAALHQLRGRVGRGARQSKCFLLHS 420

Query: 598 PPLSKN-------SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
           P   +N       +  RL VL+ + +GF IAE DL+ R  GE+ G KQSG    L     
Sbjct: 421 PGAGENAELKGDRARDRLRVLEQSNNGFRIAESDLQLRGAGELFGTKQSGQQVNLFHASM 480

Query: 651 LHD-SLLEIARKDAKHILTQ 669
             D  LLE ARK A  ++++
Sbjct: 481 STDLYLLEAARKAAAEMISR 500


>gi|169834949|ref|YP_001715629.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169409056|gb|ACA57466.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 662

 Score =  306 bits (784), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 218/624 (34%), Positives = 343/624 (54%), Gaps = 49/624 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KI-LLNDGTGE 100
           +L+ + PS ++D   +  I ++ + +  +I   I++     + K + Y K+  ++D    
Sbjct: 27  ELVRFFPSKYLDFRKQQFIHQLIDGQTTSIAVTITK---ININKIKQYIKVNAIDDFGAP 83

Query: 101 ITLLFFYRKTEMLKNVFFEGR-----KITVTGKIK---KLKNRIIMVHPHYIFHNSQDVN 152
           + L++F        N+F   +     K  V G +    K  N+I +++P YI   ++  N
Sbjct: 84  LCLIWF-------NNIFINKKLSINTKYIVCGTVSINYKYNNQIQIINPIYISKETE--N 134

Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
           F  I  +YS   G+S +     I  AL +L    E++E++LL++    +  EA   IH P
Sbjct: 135 FKKIMPIYSKIAGMSYEYLTNSIESAL-KLINDSEYLEENLLEQFKLQNEMEALINIHAP 193

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN--VEGKIAQKILRNIP 270
                 E    A+ R  +D L   Q  L    ++ KK+  I I   VE    QK+L  +P
Sbjct: 194 LYK---EQIIGAKRRFIFDTLFQYQFQLENKNRKSKKKSEIKIRTLVE---YQKLLDKLP 247

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T+ Q  AI  IL  M +  ++  +L  DVG+GKT++A + +   VE G Q V+MAP 
Sbjct: 248 FKLTQDQIKAIDTILNQMQKNKKVNTLLTADVGAGKTVIAFLIIIILVENGYQGVLMAPT 307

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH+    K   +T      I G +  + +++ L+ I  G  ++IIGTH++ Q  +
Sbjct: 308 SVLAKQHFNEFNKLLCDTPFKACFINGTLKASEKKEILQGIKEGVYNVIIGTHSVIQKDV 367

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD-IDISKIT 449
           ++ KL + ++DE+HRFGV QR  L +K    H + M+ATPIPR+L LT  GD I+I  I 
Sbjct: 368 KFKKLGVAVIDEEHRFGVSQRAVLLEKTNNIHYVTMSATPIPRSLALTMYGDNIEIVTIK 427

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNFRSVVER 506
             P GRKPIKT +  IN   +    +   + +G + Y++CP IE+   +   N  S+ + 
Sbjct: 428 TMPNGRKPIKTAL--INNKKKAYNFMLKEIKKGHQCYFVCPLIEKSYCESMENIDSIEDI 485

Query: 507 FNSLHEHFTS---SIAIIHGRMSD--IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           +  ++  F +    ++++ G+M +  IDKE  ++ FKN   +++IATTVIEVGI+V +A+
Sbjct: 486 YKEMNTFFKNKDIKLSMVTGKMKEEQIDKE--INKFKNNETQIIIATTVIEVGINVPNAT 543

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            I+I NAE FGLAQLHQLRGRVGR    S CIL+     SKNS  RL V+  T DGF+IA
Sbjct: 544 TIVINNAERFGLAQLHQLRGRVGRSSLQSYCILIS----SKNS-ERLQVMTTTNDGFIIA 598

Query: 622 EEDLKQRKEGEILGIKQSGMPKFL 645
            +DLK R  G ++G +QSG  +F+
Sbjct: 599 NKDLKLRGSGNLIGEEQSGKNEFV 622


>gi|126434504|ref|YP_001070195.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. JLS]
 gi|126234304|gb|ABN97704.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. JLS]
          Length = 741

 Score =  306 bits (783), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 210/688 (30%), Positives = 355/688 (51%), Gaps = 80/688 (11%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDR---HYRPKISEISEERIVTITGY 75
           +G K +  L +       N     DLL ++P  + D        +  ++ E   VT    
Sbjct: 12  IGGKSAALLEEHFGICTVN-----DLLRHYPRKYSDGMSVRGEGESLDLEEGEHVTFVDV 66

Query: 76  ISQHSSFQLQ---KRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I++    Q++    +RP K L   L      +T  FF    + + +    G ++ ++G++
Sbjct: 67  ITKAEPGQMKPIPGKRPRKYLRVTLGRRNPVVTATFF--NADWMIDKLPVGTRLMLSGEV 124

Query: 130 KKLKNRIIMVHPHYIFHNSQDVN-----------------------------FPLIEAVY 160
           K  +N + + HP ++   S                                 FP+  A  
Sbjct: 125 KYFRNTLQLSHPAFLVLESSATRKIGTKSLKTIAASSGATGDELLAAFERDFFPIYPASA 184

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
            +    S D++   + + L  L  +PE + + +++++   S   A   IH    A++   
Sbjct: 185 KVQ---SWDIYA-CVRQVLDVLDPVPEPLPESVVRERGLISEDAALRGIH---LAENERD 237

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQES 279
              ARERL +DE +  Q  L+  R     E G P  + E  +   +   +PF  T  Q  
Sbjct: 238 RDRARERLTFDEAVGLQWGLVSRRYGELTEAGPPAPLREDGLVAGMRERLPFELTNGQRE 297

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            ++ +  +++    M R+LQG+VGSGKT++A++AM   V+AG Q  ++AP  +LA QH  
Sbjct: 298 VLEVLSGELAGTRPMNRMLQGEVGSGKTVIAVLAMLQMVDAGYQCAMLAPTEVLAAQHDR 357

Query: 340 FIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            I++               +   V ++TG+M    +R+  + +A GQA I+IGTHAL QD
Sbjct: 358 SIRQILGPLAMAGQLGGAESATRVALLTGSMTPQQKRQVRDEVATGQAGIVIGTHALLQD 417

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDI 445
           S+++  L +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ 
Sbjct: 418 SVEFDNLGMVVVDEQHRFGVEQRDRLRAKARGGITPHLLVMTATPIPRTVALTVYGDLET 477

Query: 446 SKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           S + E P GR+PI +  I + +    +D    R+   + +G++AY +  +I+E  +    
Sbjct: 478 STLRELPRGRQPITSNTIFVTQHPKWLDRAWARIVEEVRDGRQAYVVASRIDESDKPQKE 537

Query: 502 -------SVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                  +VV  ++ L     + +   ++HGR+S  +K++VM +F+ G   +L+ TTVIE
Sbjct: 538 EQGPPPVTVVALYDILKSGPLAGLRLGLMHGRLSGDEKDAVMTAFRAGEIDVLVCTTVIE 597

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV +A+++++ +A+ FG++QLHQLRGR+GRG   S C+L    P +  +  RL  + 
Sbjct: 598 VGVDVPNATVMVVMDADRFGISQLHQLRGRIGRGSHPSLCLLATRLPETSKAGARLKAVA 657

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
            T DGF +A+ DL++R+EG++LG+ QSG
Sbjct: 658 GTLDGFALADLDLRERREGDVLGMHQSG 685


>gi|3785974|gb|AAC67321.1| putative ATP-dependent DNA helicase RECG [Arabidopsis thaliana]
          Length = 845

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 205/616 (33%), Positives = 315/616 (51%), Gaps = 91/616 (14%)

Query: 106 FYRKTEMLKNVFFE--------GRKITVTGKIKKLK----------NRIIMVHPHYIFHN 147
           F+R T      F          G  + ++GK+K L+          N  ++       H 
Sbjct: 244 FFRGTRFTWQPFLNSIQEKHKVGDLVCISGKVKSLRAEDHFEMREYNIDVLKDEEESSHR 303

Query: 148 SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207
           +Q   +P    +Y    GL+      +I  AL  LP   + I K++ +    PS+ +A+ 
Sbjct: 304 AQGRPYP----IYPSKGGLNPKFLSDVISRALRVLPANMDPIPKEITKVFGLPSLNDAYV 359

Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALL--------------LMRKQFKKEIGI 253
            IH P   K  +    AR+RL +DE    Q+A L              ++ ++F+K +  
Sbjct: 360 GIHEP---KTLDEADLARKRLIFDEFFYLQLARLYQMLQSLGTKIEKDVLLEKFRKPVLN 416

Query: 254 PINVE--GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            + +E    + +  L+ +P+S T SQ SA+ +I+ D+ +   M R+LQGDVG GKT+VA 
Sbjct: 417 SVYIEEWSTLTKSFLKALPYSLTPSQLSAVSEIIWDLKRPVPMNRLLQGDVGCGKTVVAF 476

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +A    + +G QA  MAP  +LA QHYE  +   +N +       G++            
Sbjct: 477 LACMEVIGSGYQAAFMAPTELLAIQHYEQCRDLLENME-------GDL------------ 517

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-------------- 417
             G    IIGTH+L  + I+Y  L + +VDEQ RFGV QR K   K              
Sbjct: 518 QSGAISFIIGTHSLIAEKIEYSALRIAVVDEQQRFGVIQRGKFNSKLYGTSMISKSGSSD 577

Query: 418 ---------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
                    + APHVL M+ATPIPR+L L   GDI +++IT  P GR P++T I   N  
Sbjct: 578 SDDTSKADLSMAPHVLAMSATPIPRSLALALYGDISLTQITGMPLGRIPVETHIFEGNET 637

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGR 524
            I EV   +   L  G + Y + P I++ ++    R+       + + F   +  ++HGR
Sbjct: 638 GIKEVYSMMLEDLKSGGRVYVVYPVIDQSEQLPQLRAASAELEIVTKKFPKYNCGLLHGR 697

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   DKE  ++ F++G  ++L++T VIE+G+DV DAS++++ NAE FG+AQLHQLRGRVG
Sbjct: 698 MKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVG 757

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPK 643
           RG   S C+L+     S NS  RL++L  + DGF +A  DL  R  G++LG KQSG +P+
Sbjct: 758 RGTRKSKCLLVGS---STNSLKRLNMLGKSSDGFYLANIDLLLRGPGDLLGKKQSGHLPE 814

Query: 644 FLIAQPELHDSLLEIA 659
           F +A+ E+  ++L+ A
Sbjct: 815 FPVARLEIDGNMLQEA 830


>gi|108798904|ref|YP_639101.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. MCS]
 gi|119868019|ref|YP_937971.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. KMS]
 gi|108769323|gb|ABG08045.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. MCS]
 gi|119694108|gb|ABL91181.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. KMS]
          Length = 741

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 210/688 (30%), Positives = 355/688 (51%), Gaps = 80/688 (11%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDR---HYRPKISEISEERIVTITGY 75
           +G K +  L +       N     DLL ++P  + D        +  ++ E   VT    
Sbjct: 12  IGGKSAALLEEHFGIRTVN-----DLLRHYPRKYSDGMSVRGEGESLDLEEGEHVTFVDV 66

Query: 76  ISQHSSFQLQ---KRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I++    Q++    +RP K L   L      +T  FF    + + +    G ++ ++G++
Sbjct: 67  ITKAEPGQMKPIPGKRPRKYLRVTLGRRNPVVTATFF--NADWMIDKLPVGTRLMLSGEV 124

Query: 130 KKLKNRIIMVHPHYIFHNSQDVN-----------------------------FPLIEAVY 160
           K  +N + + HP ++   S                                 FP+  A  
Sbjct: 125 KYFRNTLQLSHPAFLVLESSATRKIGTKSLKTIAASSGATGDDLLAAFERDFFPIYPASA 184

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
            +    S D++   + + L  L  +PE + + +++++   S   A   IH    A++   
Sbjct: 185 KVQ---SWDIYA-CVRQVLDVLDPVPEPLPESVVRERGLISEDAALRGIH---LAENERD 237

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQES 279
              ARERL +DE +  Q  L+  R     E G P  + E  +   +   +PF  T  Q  
Sbjct: 238 RDRARERLTFDEAVGLQWGLVSRRYGELTEAGPPAPLREDGLVAGMRERLPFELTNGQRE 297

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            ++ +  +++    M R+LQG+VGSGKT++A++AM   V+AG Q  ++AP  +LA QH  
Sbjct: 298 VLEVLSAELAGTRPMNRMLQGEVGSGKTVIAVLAMLQMVDAGYQCAMLAPTEVLAAQHDR 357

Query: 340 FIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            I++               +   V ++TG+M    +R+  + +A GQA I+IGTHAL QD
Sbjct: 358 SIRQILGPLAMAGQLGGAESATRVALLTGSMTPQQKRQVRDEVATGQAGIVIGTHALLQD 417

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDI 445
           S+++  L +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ 
Sbjct: 418 SVEFDNLGMVVVDEQHRFGVEQRDRLRAKARGGITPHLLVMTATPIPRTVALTVYGDLET 477

Query: 446 SKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           S + E P GR+PI +  I + +    +D    R+   + +G++AY +  +I+E  +    
Sbjct: 478 STLRELPRGRQPITSNTIFVTQHPKWLDRAWARIVEEVRDGRQAYVVASRIDESDKPQKE 537

Query: 502 -------SVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                  +VV  ++ L     + +   ++HGR+S  +K++VM +F+ G   +L+ TTVIE
Sbjct: 538 EQGPPPVTVVALYDILKSGPLAGLRLGLMHGRLSGDEKDAVMTAFRAGEIDVLVCTTVIE 597

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV +A+++++ +A+ FG++QLHQLRGR+GRG   S C+L    P +  +  RL  + 
Sbjct: 598 VGVDVPNATVMVVMDADRFGISQLHQLRGRIGRGSYPSLCLLATRLPETSKAGARLKAVA 657

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
            T DGF +A+ DL++R+EG++LG+ QSG
Sbjct: 658 GTLDGFALADLDLRERREGDVLGMHQSG 685


>gi|288923497|ref|ZP_06417616.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
 gi|288345155|gb|EFC79565.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
          Length = 783

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 231/795 (29%), Positives = 375/795 (47%), Gaps = 128/795 (16%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL +   +G K++  L+  ++          DLL + P  + +R     +  +    
Sbjct: 4   LDTPLKSV--LGAKHASLLADELDLATVG-----DLLNHLPRRYHERGELTDLDGLVVGE 56

Query: 69  IVTITGYISQ------HSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFF 118
           I T+   +++       + +    RR      +I + DG GE++L+FF ++         
Sbjct: 57  IATVQARVTKVVKHKPRADWNTSNRRRESGRTEITVTDGRGELSLVFFNQQWR--AKALT 114

Query: 119 EGRKITVTGKIKKLKNRIIMVHP--HYIF------------------------------- 145
            G      GK+ + + R  ++HP  H I                                
Sbjct: 115 PGTTALFAGKVAEFRGRRQLIHPEVHMIDGPDPDDDAGDGRLGVAGGQLGELGVGVGGDD 174

Query: 146 -------HNSQDVNF-----PLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKD 192
                    S   +F     P+  A   L T   +    ++++++L  L   LPE +   
Sbjct: 175 VAGERGDQASAVADFAGALVPIYPATAKL-TSWKIARCLRLVLDSLGALTDPLPESVRS- 232

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              +     +A A+ +IH P    D    + AR RL +DE L  Q AL   R++ +    
Sbjct: 233 ---RHRLVGLARAYQLIHRPGTRGDV---AVARTRLKWDEALVVQTALAQRRRRVELVAT 286

Query: 253 IP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            P     G +      ++PF+ T  Q    + I  ++++   M R+LQG+VGSGKT+VA+
Sbjct: 287 QPRPGRAGGLLDAFDASLPFALTDGQREVSETIAAELAKAVPMHRLLQGEVGSGKTVVAV 346

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMP 360
            AM  AV++GGQAV++AP   LA QH+  + +                   V ++TG+MP
Sbjct: 347 RAMLLAVDSGGQAVLLAPTETLAAQHHRSLLRLLGDQARAGELGVSGPATRVALLTGSMP 406

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-T 419
              RR  L  IA G   +++GTHAL    + ++ L LV+VDEQHRFGV+QR +L  +   
Sbjct: 407 ARARRDTLAAIADGSVGLVVGTHALLGAGVTFHDLALVVVDEQHRFGVEQRDELRSRGRR 466

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP-INRI--DEVIERLK 476
            PH+L+MTATPIPRT+ +T  GD+++S + + P+GR PI T ++P +N +    +  RL+
Sbjct: 467 PPHLLVMTATPIPRTVAMTVFGDLEVSVLNQLPSGRSPISTFVVPAVNTVLMSRMWGRLR 526

Query: 477 VVLSEGKKAYWICPQIEEKKES------------------------NFRSVVERFNSL-- 510
             ++ G +AY +CP++ E                              R   ER  +   
Sbjct: 527 EEVAAGHQAYVVCPRVGEGTAGAGDPAGTEEPAPPEPVESAQPGGQGPRDGGERVGATVA 586

Query: 511 --------HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
                    E     +  +HGRM    ++ VM  F  G   +L+ATTVIEVG+DV +A++
Sbjct: 587 QTLPRLVADELAGLRVEGLHGRMPAAARDDVMTRFAAGEVDVLVATTVIEVGVDVPNATV 646

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           +II +++ FG++QLHQLRGRVGRG     C+L      +  +  RL  + +T DG  +A 
Sbjct: 647 MIILDSDWFGVSQLHQLRGRVGRGSAPGICLLQTCVDATAPAAERLRAVASTSDGAELAL 706

Query: 623 EDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
            DL QR+EG++LG  QSG  +   + +    + L+  AR++A  I+  DP+L S+   ++
Sbjct: 707 LDLAQRREGDVLGAAQSGGRRSLRLLELLRDEDLIRSAREEAGAIVAADPELQSL--PAL 764

Query: 682 RILL--YLYQYNEAF 694
           R LL   L + + AF
Sbjct: 765 RRLLADALDETSAAF 779


>gi|289705870|ref|ZP_06502250.1| putative ATP-dependent DNA helicase RecG [Micrococcus luteus SK58]
 gi|289557413|gb|EFD50724.1| putative ATP-dependent DNA helicase RecG [Micrococcus luteus SK58]
          Length = 730

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 189/553 (34%), Positives = 291/553 (52%), Gaps = 37/553 (6%)

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQ------DVN-FPLIEAVYSLPTGLSVDLFKKIIVEA- 178
           G+  + + RI + +P +   +        DV   PL  A   LP+        +++    
Sbjct: 125 GRTTEYRGRITLNNPDFALLDDDVAPGEVDVRPVPLYRATGKLPSWTVRSAVVRVLETVD 184

Query: 179 LSRLP-VLPEWIEKDLLQKKSFP----SIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
           L R+P +L E I  +              A+A+  +H P    D   T PA+  LA  E 
Sbjct: 185 LGRIPELLTERIRAEAAAALDLDAPLPGTAQAYRDLHAP---HDVAATGPAQTALALREA 241

Query: 234 LAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           L  Q AL   R ++            G + + +   +PF  T  Q +  + +  ++++  
Sbjct: 242 LLVQAALAWRRDRERAVPAVPRPPRPGGLLEALDARLPFVLTPGQVAVGEQLSAELARDA 301

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT------- 345
            M R+LQGDVG+GKTLVAL AM   V+AGGQA ++AP  +LA QH   + +         
Sbjct: 302 PMSRLLQGDVGAGKTLVALRAMLQVVDAGGQAALVAPTEVLAAQHNRALLRLMGPLAEAG 361

Query: 346 -----QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
                      V ++TG++  A RR+AL  +A G+A I +GTHAL  + + + +L L +V
Sbjct: 362 TLGAGDGPATRVALVTGSLKTAARREALLALASGEAGIAVGTHALLSEKVGFAELALAVV 421

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQHRFGV QR  L +     H+L+M+ATPIPR++ +T  GD+D+S +   P+GR+P+ T
Sbjct: 422 DEQHRFGVDQREALRRANPGTHLLVMSATPIPRSVAMTVFGDLDLSVLEGLPSGRQPVTT 481

Query: 461 VIIPINRIDEVIERLKVVLSE----GKKAYWICPQIE----EKKESNFRSVVERFNSLHE 512
            +  +     VI R+  +++E    G +A+ +CP+I+    +   +N   +  R   L  
Sbjct: 482 HVARMAHGPRVIGRVWELIAEHVAAGHQAFVVCPRIDPDDADPGHANVEEMTPRLRGLPA 541

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                I  +HGRM   ++++ M +F  G   +L+ATTVIEVG+DV +A+++ I +A+ FG
Sbjct: 542 LAGLRIDAVHGRMDQAEQDAAMQAFARGATDVLVATTVIEVGVDVPNATVMAILDADDFG 601

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+ LHQLRGRVGRG   + C+L    P    S  RL VL   +DG  IA+EDL QR  G+
Sbjct: 602 LSTLHQLRGRVGRGPGAAVCLLATRLPDGHPSLRRLEVLAQEQDGMRIAQEDLAQRGVGD 661

Query: 633 ILGIKQSGMPKFL 645
           +LG  QSG+   L
Sbjct: 662 VLGAAQSGLASGL 674


>gi|184200687|ref|YP_001854894.1| ATP-dependent DNA helicase RecG [Kocuria rhizophila DC2201]
 gi|183580917|dbj|BAG29388.1| ATP-dependent DNA helicase RecG [Kocuria rhizophila DC2201]
          Length = 753

 Score =  305 bits (780), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 215/694 (30%), Positives = 338/694 (48%), Gaps = 68/694 (9%)

Query: 3   PSFLNPLFAPLSTF-RGVGKKYSL-FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           P+F   L  PL+ +  G   + ++  L+K +      +     LL + P  +I R     
Sbjct: 13  PAFAGLLDQPLTRWIPGTSPRSTVALLAKDLGITTVGQ-----LLDHAPRRYIHRGRIQA 67

Query: 61  ISEISEERIVTITGYISQHSSFQLQ---KRRPYKILLNDGTGEITLLFFYRKTEMLKNVF 117
           ++E+      +    +   S+ +++   +R    +++ D +G    + F+      K++ 
Sbjct: 68  LTELVAGERTSFVARVESSSTRRMRSDPRRSLTDVVVADDSGAQLKITFFNAYSAQKDLP 127

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD-VNFPLIEA-------VYSLPTGLSVD 169
             G     TGK +  +  + M    Y   ++ D V     E+       VY     L+  
Sbjct: 128 V-GSLALFTGKPEFYRGELSMTGADYAPVDTPDAVAGSTSESGELLPIPVYPEAGKLTTP 186

Query: 170 LFKKIIVEAL--SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER 227
              K + + L    L  L + +   L + +  P +  A+  +H P   + +E    A+ R
Sbjct: 187 RIGKAVQQLLLTVDLDGLEDPLSPQLREAEDLPPLGRAYRDLHLPETVEAYER---AQRR 243

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN----IPFSPTKSQESAIKD 283
             + E    Q  L+  R +       P +     A  +L +    +PF  T  Q      
Sbjct: 244 FRFQEAFVLQTELVRRRAEHASH---PADPRPPCADGVLASFDASLPFELTPGQREVGVQ 300

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           I  +++    M R+LQGDVGSGKT+VAL AM   V+ GGQA ++AP  +LA QHYE I  
Sbjct: 301 ISSELAGTAPMNRLLQGDVGSGKTVVALRAMLQVVDNGGQAAMLAPTEVLATQHYEKITS 360

Query: 344 Y-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
                              V ++TG+M    RRKAL  IA G + I++GTHAL Q+++Q+
Sbjct: 361 ALGPLAEPGVLGGDPRATGVTLLTGSMSVPARRKALLDIASGASGIVVGTHALIQETVQF 420

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
             L L +VDEQHRFGV+QR  L  KA +APH L+MTATPIPRT+ +T  GD+D+S + E 
Sbjct: 421 ADLGLAVVDEQHRFGVEQRDALRGKAGSAPHTLVMTATPIPRTVAMTVFGDLDVSTLREL 480

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSE-----GKKAYWICPQI-------------- 492
           P GR+PI T ++ +       ER    L+      G++ Y + P+I              
Sbjct: 481 PGGRRPIATHVVGLAEHGPSWERRVWTLAAEHVAAGRQVYVVAPKIGDDAALPPFTSLCA 540

Query: 493 ------EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                 EE + +    + E   +  E  ++  A++HGR     K   M +F  G   +L+
Sbjct: 541 SLEAQPEEPEPATVTWLTELVAAQPELRSAGTAVLHGRQDAGTKAETMAAFDAGEIDVLV 600

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG+DV +A+++++ + E FG++QLHQLRGR+GR E  S+C+L+        +  
Sbjct: 601 STTVVEVGVDVPNATLMVVVDPERFGISQLHQLRGRIGRSEHASTCLLVTRVASEHPARA 660

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           RL  +  T DGF +AE DLK RKEG+ILG  QSG
Sbjct: 661 RLDAVAATTDGFELAEADLKLRKEGDILGASQSG 694


>gi|320528411|ref|ZP_08029573.1| putative ATP-dependent DNA helicase RecG [Solobacterium moorei
           F0204]
 gi|320131325|gb|EFW23893.1| putative ATP-dependent DNA helicase RecG [Solobacterium moorei
           F0204]
          Length = 670

 Score =  303 bits (777), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 191/526 (36%), Positives = 298/526 (56%), Gaps = 17/526 (3%)

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           I  +YS+  G+     + II   L++L   + + I  +  Q      +  A+  IH P  
Sbjct: 133 ITPIYSIKEGIRQKTLQTIIHSVLNQLQDEIIDDIPDEFRQAYRLLPLKVAYRCIHIPSS 192

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI-----AQKILRNI 269
             + +    A   L Y E L    A+ LMR       GI I  + KI      Q+ ++ +
Sbjct: 193 MNEVQ---IAVRTLKYAEFLRFFTAIQLMRS----TDGIRITKKPKIFSSKKIQQAIQTL 245

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            F  T  Q+  ++ IL DM   + M R++QGDVG GKT+VA +A+ AA  +G Q  ++AP
Sbjct: 246 SFELTADQKDTLEKILNDMGSTHTMYRLVQGDVGCGKTVVATLALYAAFLSGYQGAMLAP 305

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY  + +      +  E++   +  A +++ LE +A G+ +I+IGTH++ QDS
Sbjct: 306 TEILARQHYISVNQVLAPFGVKTEVLYSALTSAKKKEILEDVASGKINILIGTHSMIQDS 365

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + ++KL L I DEQ RFGV QR  L QK      LLM+ATPIPRTL  +  GD+D+S I 
Sbjct: 366 VTFHKLGLTIADEQQRFGVSQRKALKQKGEQVDFLLMSATPIPRTLAASLFGDMDVSTIE 425

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             PAGR    T ++  N    V++ +K +L  G++ Y IC  ++E +E   R+V +   S
Sbjct: 426 TMPAGRITPVTTLVKENSFRTVLDDIKCLLKSGRQLYVICAAVDENEEYYARNVYDTTES 485

Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           + + F    +A +HGRM+  +K+++M +F     ++L++TTV+EVG++VV+A+ +II +A
Sbjct: 486 IQKLFPQYKVACLHGRMTADEKQAIMQAFNTNDIQILVSTTVVEVGVNVVNATGMIIYDA 545

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           + FGL+QLHQLRGR+ RG E   C LL      +    RL VL  + +GF I+ EDL+ R
Sbjct: 546 DRFGLSQLHQLRGRIQRGSEQGYCWLL-TASHEERVLQRLDVLVKSNNGFEISYEDLRLR 604

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL--TQDPD 672
             G+ILG +QSG+P F++       +++  ARKDA  ++    +PD
Sbjct: 605 GPGDILGTRQSGVPDFILGNIVEDTAMINQARKDALKVMESADNPD 650


>gi|218506884|ref|ZP_03504762.1| ATP-dependent DNA helicase RecG [Rhizobium etli Brasil 5]
          Length = 243

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 140/243 (57%), Positives = 185/243 (76%)

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           I+T+ +P+ R  E++ RL+  L+EGKKAYWICP +EE +E +  S  ER  +L       
Sbjct: 1   IQTITVPMERTGEIVGRLQSALAEGKKAYWICPLVEESEELDLMSAEERHATLVAALGPD 60

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I +IHGRMS  +K++ M +FKNG  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLH
Sbjct: 61  IGLIHGRMSGPEKDAAMMAFKNGETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLH 120

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG+E S+CILLY  PL +  + RLS+++ TEDGF IAEEDLK R EGE+LG +
Sbjct: 121 QLRGRVGRGDEASTCILLYKGPLGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTR 180

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
           QSG P F IA  E H  LLEIARKDA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+
Sbjct: 181 QSGTPGFRIASLEAHADLLEIARKDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFL 240

Query: 698 RAG 700
           RAG
Sbjct: 241 RAG 243


>gi|158312984|ref|YP_001505492.1| DEAD/DEAH box helicase domain-containing protein [Frankia sp.
           EAN1pec]
 gi|158108389|gb|ABW10586.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]
          Length = 781

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 184/544 (33%), Positives = 289/544 (53%), Gaps = 47/544 (8%)

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK--QFKKE 250
           L  +    S+  A+ + H P    D    + AR RL +DE L  Q+AL   R+  +    
Sbjct: 239 LRSRHRLASLRRAYELAHRPTSRADI---AVARTRLKWDEALVVQVALAQRRRRAELAAT 295

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
           +  P    G +       +PF+ T  Q    + I  +M++   M R+LQG+VGSGKT+VA
Sbjct: 296 VSRP-GCAGGLLDAFDAALPFALTDGQREVGETIAAEMARAFPMHRLLQGEVGSGKTVVA 354

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNM 359
           + AM  AV++GGQAV++AP   LA QH+  + K                   V ++TG+M
Sbjct: 355 VRAMLTAVDSGGQAVMLAPTETLAAQHHRSLLKLLGDQARAGELGVDGPATRVALLTGSM 414

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA- 418
           P   RR+ L  +A G   +++GTHAL    + +  L LV+VDEQHRFGV+QR +L  +  
Sbjct: 415 PARARREVLAAVADGSVGLVVGTHALLGADVAFADLALVVVDEQHRFGVEQRDELRSRGR 474

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERL 475
             PH+L+MTATPIPRT+ +T  GD+++S + + PAGR PI T ++P  +   +D +  R+
Sbjct: 475 RPPHLLVMTATPIPRTVAMTVFGDLEVSTLNQLPAGRSPISTFVVPAAKSHFMDRMWGRV 534

Query: 476 KVVLSEGKKAYWICPQIE------------------------EKKESNFRSVVERFNSLH 511
           +  ++ G +AY +CP++                         E+  +    V+ R  +  
Sbjct: 535 RDEVAAGHQAYVVCPRVGDGEGGDGGEEPSGPPASGAGPREGERVGATVTEVLPRLAT-G 593

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E     +  +HGR+    ++ +M  F  G   +L+ATTVIEVG+DV +A+++II +A+ F
Sbjct: 594 ELAGLRVEGLHGRLPSPVRDEIMTRFAAGEVDVLVATTVIEVGVDVPNATVMIIMDADWF 653

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           G++QLHQLRGRVGRG     C+L      +  +  RL  +  T DG  +A  DL QR+EG
Sbjct: 654 GVSQLHQLRGRVGRGSAPGVCLLHTSVDGAVPAAERLLAVAATSDGAELARLDLVQRREG 713

Query: 632 EILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
           ++LG  QSG  +   + +    + L+  AR++A  ++  DP+L        R+   L + 
Sbjct: 714 DVLGAAQSGGRRSLRLLELLRDEDLIRAAREEAGALVAADPELEGQPALLRRLTAALDEA 773

Query: 691 NEAF 694
           + AF
Sbjct: 774 SAAF 777


>gi|314919261|gb|EFS83092.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL050PA1]
          Length = 749

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 195/606 (32%), Positives = 314/606 (51%), Gaps = 57/606 (9%)

Query: 85  QKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           ++RRP    +++L+DG   + + FF +       + +F         GK+ + +    +V
Sbjct: 95  RERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRIFSAHTHGIFVGKVGEFRGNPQLV 154

Query: 140 HPHYIFHN---------------SQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSR 181
           HP ++  +               +  V    +  +Y   + L    +   + +++E+   
Sbjct: 155 HPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYPQTSKLRTWEIASVESMLLESTPE 214

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           L   LPEW    L Q+   PS+ EA++ IH P    + +  +   ERL ++E +A Q+ +
Sbjct: 215 LEDTLPEW----LRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTM 267

Query: 241 LLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            + R+  ++ +  +    +G +       +PF+PT  Q+   + I  D+S    M R+LQ
Sbjct: 268 AVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQ 327

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------T 348
           G+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  I     +            
Sbjct: 328 GEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGEGLDAPEI 387

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              V ++TG+M  A  R AL  IA   A II+GTH+L    + Y  + LV+VDEQHRFGV
Sbjct: 388 STGVALLTGSMKAAGTRAALADIASAAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGV 447

Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465
           +QR  LT    A PH L++TATPIPRT+ +T  GD+++S + E P GR  ++T ++ +  
Sbjct: 448 EQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPA 507

Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSS--- 517
             + +     R++     G + + +CP+I      +    R        L     +    
Sbjct: 508 HGSWLTRAWRRIREECDAGHQVFVVCPRINSDDADDVEGGRPPAAAVEELAPQLATGPLA 567

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+DV +A++++I +A+ FG++
Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVS 627

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR EG +L
Sbjct: 628 QLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVL 687

Query: 635 GIKQSG 640
           G  Q+G
Sbjct: 688 GSSQAG 693


>gi|306823693|ref|ZP_07457068.1| ATP-dependent DNA helicase [Bifidobacterium dentium ATCC 27679]
 gi|309802853|ref|ZP_07696954.1| putative ATP-dependent DNA helicase RecG [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553400|gb|EFM41312.1| ATP-dependent DNA helicase [Bifidobacterium dentium ATCC 27679]
 gi|308220320|gb|EFO76631.1| putative ATP-dependent DNA helicase RecG [Bifidobacterium dentium
           JCVIHMP022]
          Length = 881

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 202/587 (34%), Positives = 288/587 (49%), Gaps = 102/587 (17%)

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           +P+ + + L   +     AEAF  IH+P   KD +    A   L Y+E L  Q AL+  R
Sbjct: 275 VPDIVPEHLRAAEGLMHRAEAFMAIHDPTNTKDCD---AALHTLRYEEALICQTALVKSR 331

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              +K      + E  +    + ++PF  T  Q   I DI  DM+    M R+LQG+VGS
Sbjct: 332 DASRKAAASACS-ETALLDDFIASLPFDLTAGQRQVIADISADMACDYPMQRLLQGEVGS 390

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY-----------------EFIKKYTQN 347
           GKT+VA+ AM  AV +G QAV++AP  +LA+QHY                 E+ + + Q+
Sbjct: 391 GKTVVAVAAMMQAVGSGLQAVLVAPTQVLAEQHYESISKMVQRMGGAVRTAEYGESHEQS 450

Query: 348 TQ-------------------------------------------IIVEIITGNMPQAHR 364
           T                                            I V ++TG M  + R
Sbjct: 451 THNQGVDGGAQVGGRSAGGEPAGTGPTGDGLAAGESVIGNLPGGDIPVLLLTGGMKLSAR 510

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHV 423
           R+ L   A G + I++ THA F  + Q   L L ++DEQHRFGV+QR  L  KA  APH+
Sbjct: 511 RRVLAVAASGTSCIVVATHAAFSKTFQAPNLALAVIDEQHRFGVEQRESLNAKADKAPHL 570

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKVVLS 480
           L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T ++P    + +  +   ++  L 
Sbjct: 571 LVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTFVVPEADAHTMASMFALIRSRLD 630

Query: 481 EGKKAYWICPQIEEKK--------ESNFRS-------------------------VVERF 507
            G++AY +CP+I+           E   RS                         + ER 
Sbjct: 631 AGERAYVVCPRIDADSTEVDTSPDEDPGRSFDELYELGEDDEQRAQRPPLHSVAEIKERL 690

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L +      A + GR  D  K  VM  F  GT  +L+ATTVIEVG+DV  AS ++I +
Sbjct: 691 AGLPQFAGIRFATLTGRDDDETKMRVMADFAAGTTPILVATTVIEVGVDVAQASCMVIFD 750

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           A+ +GL+QLHQLRGRVGRG   S   L+       ++  RL V++ + DG  IA+ DL+ 
Sbjct: 751 ADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEAGSDAAQRLEVIRGSLDGAEIAQADLEF 810

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673
           R  G++LG  QSG    L     + D  ++E AR  A+ ++  DPDL
Sbjct: 811 RGAGDVLGDAQSGGRSSLKLLRVVKDVKIIEHARTAAEELVAADPDL 857


>gi|256827001|ref|YP_003150960.1| RecG-like helicase [Cryptobacterium curtum DSM 15641]
 gi|256583144|gb|ACU94278.1| RecG-like helicase [Cryptobacterium curtum DSM 15641]
          Length = 741

 Score =  301 bits (770), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 213/686 (31%), Positives = 345/686 (50%), Gaps = 54/686 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP----YKILLNDGT 98
           DL+   P  ++D   R  I+  +  +  T+ G+I +    +L++ +P     +I L D T
Sbjct: 55  DLIDRFPHRYLDMSERTTIAAATIGQSCTVAGWIHE---IKLKRPKPRLDLVEITLRDAT 111

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIE 157
           G  TLL    +   L +   EG  + ++GKI+       M +P+  +   S D    +I 
Sbjct: 112 G--TLLVTCFRQPWLADRLHEGDTVALSGKIEFSYGFKRMTNPYLEVVEGSLDAVEGIII 169

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            ++     L+    ++++  ALS    L + +  DL  +    S   A   IH P    +
Sbjct: 170 PIHPAGGKLTAAWVRRLVSSALSLCAGLDDPLPLDLRVQYRLMSRQTALQCIHFPHTMDE 229

Query: 218 FEWTSPARERLAYDELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
                 AR RLAY+E+   ++ L++  R + +    I   ++G   + + + +PF+ T+ 
Sbjct: 230 ARL---ARRRLAYEEVFLLELNLMISQRAEAQGASPIAHRIDGPAVRALAKALPFTLTEE 286

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  A  +IL  M+       +L GDVG+GKT VAL A+AAA ++G QA++MAP  +LA Q
Sbjct: 287 QMVARDEILHRMAAPTSASHMLLGDVGTGKTAVALFALAAATDSGNQALMMAPTEVLAAQ 346

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H            +   ++T + P   R    E +++G   ++ GTHAL +  I      
Sbjct: 347 HAASAGSLLDAAGVSWALLTASTPTDERACIREGLSNGSLTVLFGTHALLEPDIAPRSCS 406

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LV++DEQ RFGV+QR  L +K      L +TATPIPRTL L   G + +S +T++P  R 
Sbjct: 407 LVVIDEQQRFGVEQRRTLREKGPGCDYLTLTATPIPRTLALALYGGMTLSYLTKRPRNRA 466

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI------------------EEKKES 498
              T ++  +R  E  E  +  L  G + + +CP I                  EE+  +
Sbjct: 467 GTTTRVLVHSRRGEAYEIARDALDAGHQVFVVCPLIGKPASDAQTKHTREAAADEEEGYA 526

Query: 499 NFRSVVERFNSLHEH----------------FTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
             R  +E    LH+                 F   S+ ++HGRM   +K + M+ F  G 
Sbjct: 527 YARIAIEDEGDLHDDDIHAAREEARFLQEKIFCGYSVGVLHGRMPATEKRASMERFAAGE 586

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ATTVIEVGIDV +A+++I+E+A+ FGL+QLHQLRGRVGRG+      L+     +
Sbjct: 587 VDVLVATTVIEVGIDVPNATVMIVEDADRFGLSQLHQLRGRVGRGDVPGEVCLISS---T 643

Query: 602 KN--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           KN  +  RL+ ++ TE+GF +AE DL  R+EG+ILG +Q G     +       +++E A
Sbjct: 644 KNPVALERLAAMERTENGFELAEFDLSLRREGDILGNRQHGASSLRLVNVIRDRAIVETA 703

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685
            +DA+ ++  DPDL+     ++R+ L
Sbjct: 704 YRDARTLIEADPDLSQPDHAALRLEL 729


>gi|171741407|ref|ZP_02917214.1| hypothetical protein BIFDEN_00490 [Bifidobacterium dentium ATCC
           27678]
 gi|283455245|ref|YP_003359809.1| RecG-like helicase [Bifidobacterium dentium Bd1]
 gi|171277021|gb|EDT44682.1| hypothetical protein BIFDEN_00490 [Bifidobacterium dentium ATCC
           27678]
 gi|283101879|gb|ADB08985.1| RecG-like helicase [Bifidobacterium dentium Bd1]
          Length = 881

 Score =  300 bits (767), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 202/587 (34%), Positives = 287/587 (48%), Gaps = 102/587 (17%)

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           +P+ + + L   +     AEAF  IH+P   KD +    A   L Y+E L  Q AL+  R
Sbjct: 275 VPDIVPEHLRAAEGLMHRAEAFMAIHDPTNTKDCD---AALHTLRYEEALICQTALVKSR 331

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              +K      + E  +    + ++PF  T  Q   I DI  DM+    M R+LQG+VGS
Sbjct: 332 DASRKAAASACS-ETALLDDFIASLPFDLTAGQRQVIADISADMACDYPMQRLLQGEVGS 390

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY-----------------EFIKKYTQN 347
           GKT+VA+ AM  AV +G QAV++AP  +LA+QHY                 E+ + + Q+
Sbjct: 391 GKTVVAVAAMMQAVGSGLQAVLVAPTQVLAEQHYESISKMVQRMGGAVRTAEYGESHEQS 450

Query: 348 TQ-------------------------------------------IIVEIITGNMPQAHR 364
           T                                            I V ++TG M  + R
Sbjct: 451 THNQGVDGGAQVGGRSAGGELAGTGPTGGGLAAGESGIGNLPGGDIPVLLLTGGMKLSAR 510

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHV 423
           R+ L   A G   I++ THA F  + Q   L L ++DEQHRFGV+QR  L  KA  APH+
Sbjct: 511 RRVLAVAASGTPCIVVATHAAFSKTFQAPNLALAVIDEQHRFGVEQRESLNAKADKAPHL 570

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKVVLS 480
           L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T ++P    + +  +   ++  L 
Sbjct: 571 LVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTFVVPEADAHTMASMFALIRSRLD 630

Query: 481 EGKKAYWICPQIEEKK--------ESNFRS-------------------------VVERF 507
            G++AY +CP+I+           E   RS                         + ER 
Sbjct: 631 AGERAYVVCPRIDADSTEVDTSPDEDPGRSFDELYELGEDDEQRAQRPPLHSVAEIKERL 690

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L +      A + GR  D  K  VM  F  GT  +L+ATTVIEVG+DV  AS ++I +
Sbjct: 691 AGLPQFAGIRFATLTGRDDDETKMRVMADFAAGTTPILVATTVIEVGVDVAQASCMVIFD 750

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           A+ +GL+QLHQLRGRVGRG   S   L+       ++  RL V++ + DG  IA+ DL+ 
Sbjct: 751 ADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEAGSDAAQRLEVIRGSLDGAEIAQADLEF 810

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDL 673
           R  G++LG  QSG    L     + D  ++E AR  A+ ++  DPDL
Sbjct: 811 RGAGDVLGDAQSGGRSSLKLLRVVKDVKIIEHARTAAEELVAADPDL 857


>gi|50954664|ref|YP_061952.1| ATP-dependent DNA helicase RecG [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951146|gb|AAT88847.1| ATP-dependent DNA helicase RecG [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 739

 Score =  300 bits (767), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 207/652 (31%), Positives = 341/652 (52%), Gaps = 57/652 (8%)

Query: 39  TRFI-DLLFYHPSSFIDRHYRPKISEISEERIVTITGYI--SQHSSFQLQKRRPYKILLN 95
           TR + DLL ++P  +  R     ++ +  +  VTI   +   Q  S + ++    ++ ++
Sbjct: 36  TRTVADLLSHYPRRYARRGELTALANLPLDENVTIIAEVLRVQERSMRARRGSILEVKIS 95

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFH----NSQD 150
           DG G +TL FF  ++   K++    R I   GK+   +  + + HP Y +F     N+ D
Sbjct: 96  DGEGILTLTFF-NQSWRAKDLTPGARGI-FAGKVSAYRGALQLAHPDYELFEPDAGNTVD 153

Query: 151 VNFPLIE-------AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                 +        +Y     ++    +K +  AL  L  + + +   ++ ++   S  
Sbjct: 154 SGSATAKEWAQTPIPIYPATGAVASWQVQKAVGLALDALGRIEDPVPAGIVAERGLISFR 213

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDE-LLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
           +A   +H P+K  D +W   AR+ L + E  +     L                V G + 
Sbjct: 214 DALEGVHRPQK--DSQWQR-ARDALRFQEAFVLQAALLQQRAAARAVAATPRRAVPGGLL 270

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++    +PF+ T  Q     +I +D+     M R++QG+VGSGKTLVAL AM A  ++GG
Sbjct: 271 ERFDAGLPFALTDDQALVGGEIARDLDADAAMHRLVQGEVGSGKTLVALRAMLAVADSGG 330

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           Q+ ++AP  +LA QH   I        + +++  ++TG +  A R++AL R   GQ+ ++
Sbjct: 331 QSALLAPTEVLAAQHLRSIAAMLGPGLSIELMPTLLTGQLSAAERKRALLRTVSGQSRLV 390

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLT 438
           +GTHAL  D++ +Y L LV+VDEQHRFGV+QR +L  K  T PHVL++TATPIPRT+ +T
Sbjct: 391 VGTHALLGDAVTFYDLGLVVVDEQHRFGVEQREELRAKGGTPPHVLVLTATPIPRTVAMT 450

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDE------VIERLKVVLSEGKKAYWICPQI 492
             GD+D+S I   PAGR+ I++ ++P+  +D       + ER    +++G++ + +CP I
Sbjct: 451 VFGDLDVSTIAHLPAGRQVIESFVVPL--VDRPGWERRIWERASEEIAKGRQVFVVCPAI 508

Query: 493 EEKKE------------------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
             K+                         +N  SV  +  +     ++ I ++HG +   
Sbjct: 509 TGKETEEDTGQPEQETEAAFSPDAPARPIANVESVAAQVRADLLFASARIGVLHGGLPSE 568

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            K+  M SF  G   LLIATTVIEVG+DV +AS++I+ +A+ FG++QLHQLRGRVGRG  
Sbjct: 569 AKDETMRSFAVGDIDLLIATTVIEVGVDVPNASVMIVLDADRFGVSQLHQLRGRVGRGGV 628

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
              C+L+        +  R+  +  T DGF +A  DL+ R+EG++LG +QSG
Sbjct: 629 PGLCLLVTAAGQDTLARERVEAVAATLDGFELANIDLELRREGDVLGSRQSG 680


>gi|257063714|ref|YP_003143386.1| RecG-like helicase [Slackia heliotrinireducens DSM 20476]
 gi|256791367|gb|ACV22037.1| RecG-like helicase [Slackia heliotrinireducens DSM 20476]
          Length = 723

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 220/712 (30%), Positives = 356/712 (50%), Gaps = 57/712 (8%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+++  GV    +  LS++         R  DLL + P  ++D     +IS I    
Sbjct: 11  LDAPVTSVSGVSSGRAAGLSRL----GIRTVR--DLLQHFPHRYVDMS---RISTIEGAG 61

Query: 69  I---VTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           I   VTI G I +    +L++ RP     ++ + DGTG +   FF  +   +      G 
Sbjct: 62  IGDSVTIVGTIHE---VRLKRPRPRLSLTEVTIVDGTGTLIATFF--RQPWIAKTLKTGT 116

Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           +++V G ++       M  P   +  + Q+     I  V+     ++  + + I+  A+ 
Sbjct: 117 RVSVAGTLEFNYGYKRMTAPFLDVLEDDQNPMSGQIVPVHHATGKVTPGIMRLIVRNAVD 176

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
                 + +  +L  K    S + A+  IH P+  +D      AR RLAY+E+L  Q+ +
Sbjct: 177 SAWGAYDPLPLELRTKYRLMSRSNAYRSIHFPQDMRDVHQ---ARRRLAYEEVLMLQMHM 233

Query: 241 LLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+  +  + +     +V +G  ++ +++ +PFS T  QE A+ +I   M+Q   M  +L 
Sbjct: 234 LMSARDRQDDGPAHEHVFDGPYSEALMKALPFSLTSDQERAVAEIQMRMAQPKVMSHMLL 293

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT VA  A+AAA +A  Q  +MAP  +LA Q+   +        I   ++TG+ 
Sbjct: 294 GDVGTGKTAVAGFAIAAAADARFQTFMMAPTEVLATQYAASLGGLFDQAGISWALLTGST 353

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
           P   R   L R+A G   ++ GTHAL +D +  +   LVI+DEQ RFGV QR +L +K  
Sbjct: 354 PAEDREDILMRLASGHTDVVFGTHALLEDDVVAHDCGLVIIDEQQRFGVDQRKRLIEKGR 413

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L MTATPIPRTL L   G++ +S + + P  R P KT ++      +  +      
Sbjct: 414 NADALFMTATPIPRTLALALYGNLSLSYLRQVPFDRPPRKTQVVDFRDRGKAYDAALAAC 473

Query: 480 SEGKKAYWICPQI-----------------EEKKES------NFRSVVERFNSLHEHFTS 516
             G++ Y +CP +                 EE+  S      + R   ++       F  
Sbjct: 474 RRGEQVYVVCPLVGQKRKADDDKKKDDRDAEEETPSYIESDEDMRQDDQKAAEAEAAFLQ 533

Query: 517 S-------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           S       + ++HGRM    K + M+ F+ G   +L+ TTVIEVG+DV +A+++IIE+A+
Sbjct: 534 SKVFADFKVGLLHGRMDAKAKHAAMEDFRAGQTDVLVCTTVIEVGVDVPNATVMIIEDAD 593

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            FGL+QLHQLRGRVGRG +     L+     S+++  RLS ++ T+DGF +AE DL  R+
Sbjct: 594 RFGLSQLHQLRGRVGRGTKPGEVYLIAATS-SEDALERLSAMEATDDGFELAERDLALRR 652

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           EG+ILG +Q G     +        L+E+A +DA+ +L  DP+  +   Q++
Sbjct: 653 EGDILGNRQHGASVLRLVNIVRDGKLIELAHEDAEALLDADPEFETPAMQAL 704


>gi|209524184|ref|ZP_03272734.1| DEAD/DEAH box helicase domain protein [Arthrospira maxima CS-328]
 gi|209495275|gb|EDZ95580.1| DEAD/DEAH box helicase domain protein [Arthrospira maxima CS-328]
          Length = 670

 Score =  296 bits (758), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 183/518 (35%), Positives = 290/518 (55%), Gaps = 24/518 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTG 99
           DLL+Y+P   ID   +  I E++    VTI   + + + F   K R   IL   + D TG
Sbjct: 153 DLLYYYPRDHIDYARQVPIKELAPGETVTIVAQVKRCNCFSSPKNRQLTILELMVKDATG 212

Query: 100 EITLLFFYRKTEM--------LKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-----IFH 146
           ++ +  F+              K  +  G  I  +G +KK K  I + +P       +  
Sbjct: 213 QLKISRFFAGNRYSNKGWQHKQKYNYPPGAIIAASGLVKKNKYGITLDNPELEVLDRVDS 272

Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
            +  +    +  VY L  G+  DL +K ++ AL     LPE +   L +K     I++A 
Sbjct: 273 RAASMKIGRVLPVYPLSDGIGADLLRKAVLAALPAANKLPESLPPKLREKYQLIEISDAI 332

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK--EIGIPINVEGKIAQK 264
             IH P    + +W + AR RL +DE    QI LL  R+Q  K  E    +  +G++ Q+
Sbjct: 333 TNIHFP---PNRDWLASARRRLVFDEFFYLQIGLL-QRRQVSKTNEKSAALLPQGELIQQ 388

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
             + +PF  TK+Q+  I +IL D++ +  M R++QGDVG+GKT+VA++AM AA++AG Q 
Sbjct: 389 FYKILPFELTKAQKRVIGEILTDLNSEEPMNRLIQGDVGAGKTVVAVVAMLAAIQAGYQT 448

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  +LA+QHY+ +  +     + VE++TG+   A RR+   ++  G+  +++GTHA
Sbjct: 449 ALMAPTEVLAEQHYQKLVGWLNLMHLPVELLTGSTKAAKRRQIHAQLQTGELPVLVGTHA 508

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L QD + ++KL LV++DEQHRFGV QR KL QK  +PHVL MTATPIPRTL LT  GD+D
Sbjct: 509 LIQDQVNFHKLGLVVIDEQHRFGVHQRAKLQQKGESPHVLTMTATPIPRTLSLTLHGDLD 568

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           +S++ E P GR+PI+T ++   +  E  + +   +++G++ Y + P +EE ++ + RS V
Sbjct: 569 VSQLDELPPGRQPIQTTMLSGRKRQEAYDLISREVAQGRQVYVVLPLVEESEKLDVRSAV 628

Query: 505 ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNG 540
           E    L         IA++HGRM+  +KE+ +  F+ G
Sbjct: 629 EEHQKLPTKIFPELGIALLHGRMNSPEKEAAIAKFREG 666


>gi|213422785|ref|ZP_03355828.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 342

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 150/314 (47%), Positives = 208/314 (66%), Gaps = 6/314 (1%)

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K      
Sbjct: 9   RQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGF 68

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++   
Sbjct: 69  HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRNAC 128

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM +F
Sbjct: 129 TTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAF 188

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 189 KQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 248

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      +++ 
Sbjct: 249 SPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIP 308

Query: 658 IARKDAKHILTQDP 671
             ++ A+HI  + P
Sbjct: 309 EVQRIARHIHERYP 322


>gi|300933877|ref|ZP_07149133.1| ATP-dependent DNA helicase [Corynebacterium resistens DSM 45100]
          Length = 734

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 176/478 (36%), Positives = 271/478 (56%), Gaps = 37/478 (7%)

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PEW   +          A A   IH P      E   PAR RL ++E L  Q+ + L R 
Sbjct: 217 PEWPVDE--HGAPLLDFATALRQIHQP----PVEGPEPARTRLKFNEALELQLVMALRRA 270

Query: 246 QFKKEIGIPINVEGKIA--QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
              +   + + V G  +  Q ++ ++PF  +  Q+ A  +I   +        +LQG+VG
Sbjct: 271 DATQRTAMKMPVGGTDSARQAVVDSLPFELSPGQQRAGAEIAAALDSTTPASLLLQGEVG 330

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNM 359
           SGKT+VAL+AM  A+EAG Q   +AP  +LA QH       + +      + V ++TG+ 
Sbjct: 331 SGKTVVALLAMMQAIEAGYQCAFIAPTEVLAVQHARTLVGLLDRSDAGRSVGVTVLTGSQ 390

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A R+ AL  I  GQA I++GTHA+ Q++++++ L LVIVDEQHRFGV+QR +L   + 
Sbjct: 391 KTAERKAALLDIVSGQAQIVVGTHAVIQETVEFFSLGLVIVDEQHRFGVRQRDQLRNNSP 450

Query: 420 ---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPA-----GRKPIKTVIIPINR---I 468
               PH+++MTATPIPRT+ +T  GD+   ++   PA      R+ + T ++ +++   +
Sbjct: 451 VDRTPHMMVMTATPIPRTVAMTMFGDLTPVRLPGLPAREGGEARRGVATNVVYLHKSAWV 510

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH--EHFTSSIAIIHGRMS 526
             V ER +  L+ G++A+ + P+IE +       V++ F  L   E     + ++HG++ 
Sbjct: 511 RRVWERCREELNAGRQAFIVAPKIEGEG-----GVLQTFEQLSHTELREYRVGLLHGKLP 565

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM +F  G    L+ATT++EVG+DV +A+++II  A+ FG++QLHQLRGRVGRG
Sbjct: 566 PEEKDEVMRAFVAGDIDALVATTIVEVGVDVPNATMMIILGADAFGVSQLHQLRGRVGRG 625

Query: 587 EEISSCILLYHPPLSKN----SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           E    C+LL   P  +N    +  RL  +  T DGF +AE DLKQR EG++LG  QSG
Sbjct: 626 EHAGLCLLL---PSDENLPAVTRERLESVAMTSDGFELAELDLKQRTEGDVLGADQSG 680


>gi|139436979|ref|ZP_01771139.1| Hypothetical protein COLAER_00112 [Collinsella aerofaciens ATCC
           25986]
 gi|133776626|gb|EBA40446.1| Hypothetical protein COLAER_00112 [Collinsella aerofaciens ATCC
           25986]
          Length = 725

 Score =  294 bits (753), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 221/687 (32%), Positives = 353/687 (51%), Gaps = 38/687 (5%)

Query: 43  DLLFYHPSSFID--RHYRPKISEISEERIVTITGYISQHSSFQLQKR-RPYKILLNDGTG 99
           DLL + P  ++D  R +  +++ I    + TI   + +    Q + R +  ++ L D TG
Sbjct: 48  DLLLHIPHRYLDFTRSWSIEMAPIGT--VCTIIATVDRIVQKQPRPRMQVTEVSLVDETG 105

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
            + + FF  +   +     +G ++ V GK++       M  PH+           ++  V
Sbjct: 106 VLQVAFF--RQPWIAQQLKQGDRLAVMGKVEFAYGFKQMASPHFEKLEGGRAAGTIL-PV 162

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           + +  G+S    ++I+  AL  +    + I   L  K+   S A A   IH P    + +
Sbjct: 163 HYVSDGVSRAWMRRIVSGALELVGNPFDPIPAPLRAKRKLMSTARALRSIHFPSSMAERD 222

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
               AR RLAY+E L  Q+AL L       E+    ++ G+    + + +PFS +  QE+
Sbjct: 223 I---ARRRLAYEECLYLQLALRLRNDGGLVEVVPYAHIAGEHLAALKQALPFSLSDEQEA 279

Query: 280 AIKDILQDMSQKNRML-RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           A +DIL DM    R++ R+L GDVG+GKT VA  A+A AV++G QA +MAP G+LA+Q+ 
Sbjct: 280 AFQDILHDMCDDARVMNRLLLGDVGTGKTAVAACALAVAVDSGTQACVMAPTGVLARQYA 339

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +          I   ++TG  P A R +   ++  G+  ++ GTHA+  + + +  L LV
Sbjct: 340 DKTGPLLSQAGISWALLTGATPAAERERIHVQLESGELDVLFGTHAVLSEDVNFKHLSLV 399

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DEQHRFGV QR  L  K     +L+MTATPIPRTL L+  GD++ S I  +P     +
Sbjct: 400 VIDEQHRFGVGQRNALRAKGPGADLLVMTATPIPRTLALSVYGDLETSIIRHRPVPGAGV 459

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------FRSVVERFN-- 508
            T ++  +  D     ++    +G++AY ICP +E    ++         R    R    
Sbjct: 460 TTRVLTESSRDLAYGAIREAHEKGQQAYVICPLVEPSDSADELEDVPGIARDDEGRVTVP 519

Query: 509 -SLHEHFTS-----------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             LH+  T            +I  +HGRM   +K+ V+D+FK G   +L++TTV+EVG+D
Sbjct: 520 VPLHDTATELDRLRLALPGLTIERLHGRMRAGEKDRVIDAFKRGEIDVLVSTTVVEVGVD 579

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT---RLSVLKN 613
           V +A++++IEN E FGLA LHQLRGRVGRG    +C+++ H   +  +     RL  L+ 
Sbjct: 580 VPNATVMVIENGERFGLAALHQLRGRVGRGGVAGTCLVMTHSKGNGGTSAAQDRLQSLEK 639

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF +A+ DL+ R EGEILG +Q G         +  + L+E A  DA  +L    +L
Sbjct: 640 TADGFTLAQMDLRLRHEGEILGYRQHGGVTLRFVDLDADEELIEWAHLDAVELLRYASNL 699

Query: 674 TSVRGQSIRILLYLYQYNEAFQFIRAG 700
            SV  + +R  +   +Y   F+ +  G
Sbjct: 700 DSVATRPLRDAVA-TRYRHIFKEVSGG 725


>gi|189485610|ref|YP_001956551.1| ATP-dependent DNA helicase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287569|dbj|BAG14090.1| ATP-dependent DNA helicase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 700

 Score =  294 bits (752), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 226/683 (33%), Positives = 341/683 (49%), Gaps = 39/683 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEI 101
           D+L + P  + DR     I +  ++    I G I +    QL +      I + DG    
Sbjct: 32  DMLTFFPVWYQDRKNIVSIRDAYKQPQSCIFGKIGKAYDRQLSRGLCLLYIEIFDGVSTG 91

Query: 102 TLLFF-----YRKTEM---LKNVFFEGRKITVTGKIKKLK-NRIIMVHPHYIFHNSQD-- 150
              FF     Y  T++   +K  F  G    + G  K     R I V  +    N +D  
Sbjct: 92  YARFFRKKNPYSSTDIFASIKKAFEPGTFAYIYGSTKTGNCGRFIDVDDYETVKNEKDKP 151

Query: 151 VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWIEKDLLQK-KSFPSIAEAFNI 208
           + F  I  VY L  GL+    ++ +   L  +  L P+ +  DL+      P +  +  I
Sbjct: 152 LLFNRIMPVYPLTEGLNQRFIREAVKSILDSVCGLYPDVL--DLIPDFGGIPRLKSSLAI 209

Query: 209 --IHNPRKAKDFEWTSPARERLAYDELLAGQIALLL----MRKQFKKEIGIPINVEGKIA 262
             IH P   +D E    AR   A  E    + AL L    +RK+ K++      ++  + 
Sbjct: 210 QKIHYPGTLEDVE---NARRAFALQEFFIFESALSLSHNNIRKKRKEQ---RYEIQKTLF 263

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
               RN+    TK Q+ AI DI  DM     M R+L GDVG GKT+VAL A+  AV +G 
Sbjct: 264 TAFKRNLKLEFTKDQKKAINDIFSDMQSLYPMNRMLMGDVGCGKTVVALSAVLLAVGSGY 323

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM--PQAHRRKALERIAHGQAHIII 380
           Q +I+AP  ILA+QHY  +        +   + T      ++ R K L    +G   I I
Sbjct: 324 QTMIVAPTEILAEQHYLTVSNMLLGLSVKAVLATSLTLKKKSEREKILAGFENGDIKIAI 383

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTH+L +D I++  L L++VDEQ +FGV Q+  ++ KA +P +L+MTATPIPR+L LT  
Sbjct: 384 GTHSLIEDKIKFKNLSLIVVDEQQKFGVMQKFAMSDKARSPDILMMTATPIPRSLALTVY 443

Query: 441 GDIDISKITEKPAGRKPIKTVIIP-INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           G +D++ I + P GR  +KT  +   +   + IE LK       + Y + P I+E  +  
Sbjct: 444 GGMDMTAIKQLPPGRTSVKTYFLAEQSAYIKAIEELK----NKNQVYIVYPIIDESDKLV 499

Query: 500 FRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +S  +    L + +     + ++HGRM    K  +M  FKN    +LI+TTVI VGIDV
Sbjct: 500 LKSAEQESKKLSQTWFRDFKVGLLHGRMKSSKKNKIMLEFKNKEFDVLISTTVIGVGIDV 559

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            D +++II++AE FGL+ LHQLRGR+GRG + S   L+     ++ +  RLSV+ +T +G
Sbjct: 560 PDVTVMIIQHAERFGLSDLHQLRGRIGRGSKQSYAYLIGDLK-NEAARKRLSVMTSTNNG 618

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           F IAEEDLK R  GE++G  Q G PKF          ++E  +  A  I  QDP L+   
Sbjct: 619 FKIAEEDLKMRGHGELMGTLQHGFPKFKAGDLIKDADIIEFTKNLAAKITEQDPYLSKGE 678

Query: 678 GQSIRILLYLYQYNEAFQFIRAG 700
              ++ L+Y + +++  +FI  G
Sbjct: 679 NAVLKSLIYKH-FSDKIKFINIG 700


>gi|218191448|gb|EEC73875.1| hypothetical protein OsI_08657 [Oryza sativa Indica Group]
          Length = 541

 Score =  294 bits (752), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 168/456 (36%), Positives = 264/456 (57%), Gaps = 36/456 (7%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +A+K+L+ +P+  T SQ +A+K+I+ D+ +   M R+LQGDVG GKT+VA +A    + +
Sbjct: 78  LARKLLKVLPYLLTPSQLNAVKEIIWDLRRPVPMNRLLQGDVGCGKTVVAFLACMEVISS 137

Query: 321 GGQAVIMAPIGILAQQHYE----FIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQ 375
           G QA  M P  +LA QHYE     ++K+  +  +  + ++TG+      R     +  G+
Sbjct: 138 GFQAAFMVPTEVLALQHYEHLTSLLEKFDGDECKPNIALLTGSTSTRESRIIRNGLKTGE 197

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------------- 418
             ++IGTH+L  D  ++  L + ++DEQ RFGV QR +   K                  
Sbjct: 198 IAMVIGTHSLIGDKTEFSALRISVIDEQQRFGVVQRGRFNSKLYTPSTKSSDDDTISDEN 257

Query: 419 ------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDE 470
                  APHVL M+ATPIPRTL L   GD+ +++IT+ P GR+PI+T+ +  N    + 
Sbjct: 258 SASEIFMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRQPIETLALEGNDAGFES 317

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528
           V + +   L +G K Y + P IEE ++     +    F+S+ + F      ++HGRM   
Sbjct: 318 VFQMMSDELVDGGKVYLVYPIIEESEQLPQLHAAKAEFDSIKQKFEGYPCGLLHGRMRSD 377

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +K+  + SF++G  ++L++T VIE+G+DV DAS++++ NAE FG++QLHQLRGRVGRGE 
Sbjct: 378 EKDGALSSFRSGETRILLSTQVIEIGVDVPDASMMVVMNAERFGISQLHQLRGRVGRGER 437

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIA 647
            S C+ L   P   ++  RL VL+ + DGF +A  DL  R  G++LG KQSG +P+F IA
Sbjct: 438 KSRCVFLCSTP---SALPRLKVLEKSSDGFYLANADLLLRGPGDLLGKKQSGHLPEFPIA 494

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           + E+  S+L+ A   A ++L    DL    G  + +
Sbjct: 495 RLEIDGSILQEAHLAALNVLGTSNDLAQFPGLKVEL 530


>gi|295396026|ref|ZP_06806210.1| DNA helicase RecG [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971114|gb|EFG47005.1| DNA helicase RecG [Brevibacterium mcbrellneri ATCC 49030]
          Length = 737

 Score =  293 bits (749), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 198/597 (33%), Positives = 305/597 (51%), Gaps = 72/597 (12%)

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------LPEWIEKDLLQKKS 198
            H    +  P+   +YS+     +    ++I   L RLP+      +P+ +  ++     
Sbjct: 151 MHQEMQMTKPM--PIYSVKGKAKLSTVTRVIHRMLDRLPLEAFEDTMPQHVRSEM----G 204

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI--- 255
             S  EA   IH PR     +    ARE  A++E  A Q + +L  KQ  ++   P+   
Sbjct: 205 LYSYKEALEGIHRPRDKAQLQ---QAREWFAFEEAFALQ-SYMLSNKQVHEKEAAPVLAG 260

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
              GK+ Q   ++  F  T+SQ+ A  +I +D+ +   M R+L GDVGSGKTLVAL AM 
Sbjct: 261 AAMGKLDQ-FDQHQTFELTRSQKQAGTEISRDLVRSTPMNRLLHGDVGSGKTLVALRAML 319

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKK---------YTQNTQIIVEIITGNMPQAHRRK 366
            AV++G QA ++AP  ILA QH   ++          +T   +I  E++TG+M    R++
Sbjct: 320 QAVDSGYQAALLAPTEILATQHVGSLRSLLGELASDGFTDGVRI--ELLTGSMSGRERKR 377

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVL 424
               +A G   I++GTH L  D+  + KL LV++DEQHRFGV+QR +L +K     PH L
Sbjct: 378 VATELAAGIVDIVVGTHTLLSDTTIFDKLGLVVIDEQHRFGVEQREQLREKGGGKVPHTL 437

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--- 481
           +MTATPIPRT+ LT   D+D+S + E P G K + T ++P+        R+  V+SE   
Sbjct: 438 VMTATPIPRTVALTVYSDLDVSTLRELPGGPKQVSTHVVPMYEKPRWFNRVWEVVSEQVQ 497

Query: 482 -GKKAYWICPQIEEKKESN------------------------------FRSVVERFNSL 510
            G + + +  +I+ +++ +                                 + ++  SL
Sbjct: 498 SGHQTFVVTSRIDSEEDPDATDEGRSSGAHGGVAGETGGSDPGRPRLLGVEELADKLRSL 557

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            E     I  +HG+     KE+ M  FK+    +L+ATTVIEVG+DV +A ++++ +A+ 
Sbjct: 558 PELKDVRIETLHGKSEQDVKETAMQRFKDHEFDVLVATTVIEVGVDVHNARVMVVFDADR 617

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FG+AQLHQLRGRVGR  + + C  +        S  RL  + +T DGF +AE DLK RKE
Sbjct: 618 FGVAQLHQLRGRVGRDGKPAMCFFVTQNREDSESRERLEYVASTTDGFALAEYDLKTRKE 677

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G++LG  Q G  +      +  ++L+  AR  A+  L  DP L     Q   + LYL
Sbjct: 678 GDVLGTSQWGAARLRFVSIK-DENLIMTARNAAQGALQDDPQL----AQRSALALYL 729


>gi|283769481|ref|ZP_06342377.1| putative ATP-dependent DNA helicase RecG [Bulleidia extructa W1219]
 gi|283103749|gb|EFC05135.1| putative ATP-dependent DNA helicase RecG [Bulleidia extructa W1219]
          Length = 667

 Score =  293 bits (749), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 177/504 (35%), Positives = 293/504 (58%), Gaps = 17/504 (3%)

Query: 170 LFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
             +KI+ E L  +  VLP +    L++K       +A   IH P      +    A  RL
Sbjct: 150 FMEKILKECLGEQEDVLPRF----LIEKYHLLHRQQALRYIHLPLHQASLK---QAVRRL 202

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
            Y+E L     L L ++    E      +     Q +++ IPF  T  Q++   +I+QDM
Sbjct: 203 KYEEFLRFFTHLYLKQEDEHYEGKKKKKILDTYLQALIQQIPFELTTDQKNTFFEIVQDM 262

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-YTQN 347
               +M R++QGDVGSGKT++A +++ A V +G Q  ++AP  ILA+QH++ +K  + + 
Sbjct: 263 RSMKKMNRLVQGDVGSGKTVIAGMSLLACVSSGYQCALLAPTEILARQHFQTMKSLFPKE 322

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
           +Q +  + +G +  + +   L  +  G+  ++IGTH+L Q  +++ KL LV+VDEQ RFG
Sbjct: 323 SQRMALLYSG-LSGSEKESILTDLKKGKIQMVIGTHSLLQSGVKFQKLGLVVVDEQQRFG 381

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           VQQR  L  ++     L+MTATPIPRTL  + LG +D+S I   P GRK   T  +  N 
Sbjct: 382 VQQREFLKSQSNDVDFLVMTATPIPRTLASSLLGGMDVSTIHSMPQGRKAPVTKRLEENS 441

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKES-NFRSVVERFNSLHEHFTS-SIAIIHGRM 525
              V++ ++ +L +G + Y IC  +   +     R+V +   +L + F + ++A+IHG+M
Sbjct: 442 FHSVLKEVQALLDKGHQLYVICAAVNANESGLKVRNVYDTQRNLAKVFPNYTVALIHGQM 501

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +KE++M+ F +   ++L++TTV+EVG++ V+A+ +II +++ FGL+ LHQLRGR+ R
Sbjct: 502 KSQEKEAIMNQFYSNQIQILVSTTVVEVGMNCVNATGMIIYDSDRFGLSTLHQLRGRIQR 561

Query: 586 GEEISSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           G +   C LL     S++  T  RL VL  ++DGF I+E+DL+ R  G+ILG++QSG+P 
Sbjct: 562 GNDQGYCWLLSR---SQDELTIERLEVLVKSDDGFYISEQDLRLRGPGDILGLRQSGLPS 618

Query: 644 FLIAQPELHDSLLEIARKDAKHIL 667
           F++       + ++ A+ DA+ IL
Sbjct: 619 FVLGNLIEDTAFIDQAKLDAQEIL 642


>gi|327399690|ref|YP_004340559.1| DEAD/DEAH box helicase domain-containing protein [Hippea maritima
           DSM 10411]
 gi|327182319|gb|AEA34500.1| DEAD/DEAH box helicase domain protein [Hippea maritima DSM 10411]
          Length = 716

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 196/568 (34%), Positives = 300/568 (52%), Gaps = 36/568 (6%)

Query: 88  RPYKILLNDGTGEITLLFFYRKTEMLKNVFFE---GRKITVTGKIKKLKNRIIMVHPHYI 144
           R   +LLN     I   +F R T  +K +      G +I   GK  +    + + HP  I
Sbjct: 116 RVLSVLLNSKGVHIRCNWF-RLTPYIKRMLSSIKPGDEIVCLGKASRDGFLLQLNHPKLI 174

Query: 145 ----FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP-EWIEKDLLQKKSF 199
               F  S+ + +P I        GL      K   +A+  LP  P +++   ++ K + 
Sbjct: 175 KAKEFEPSKRIVYPNI--------GLRNTTIAKAKEKAMLMLPKRPFDYLPYSVISKNNL 226

Query: 200 PSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           P + E F   H      D    S  ++R  Y+E+    + L L  K+  ++    I  + 
Sbjct: 227 PLLDEFFE--HLKSDGAD----SSIQKRQKYEEMFFLLLGLRLQEKRLTQKTAPSIETQA 280

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
               ++ +++PF  T  Q  AI +IL+DM++   MLR+LQGDVG GKT+VALI   AA++
Sbjct: 281 DFLDEVKKHLPFELTNGQIQAIGEILKDMTRSKPMLRLLQGDVGCGKTVVALICALAALK 340

Query: 320 AGGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           A  Q  IMAP   LA Q +    + + K+   T ++V           +    ++I  G+
Sbjct: 341 ANYQVAIMAPTQPLAVQFFLQADKLLAKFKFKTSLLVS------STKKKESVYQKIKSGE 394

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
              ++GTHAL ++ +++  L  +I+DEQHRFGV+QR  L+ K   PH+LLM+ATPIPR+L
Sbjct: 395 IDCVVGTHALIEEQVEFKNLGFIIIDEQHRFGVEQRKNLSSKGKFPHLLLMSATPIPRSL 454

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +       +S I EKPA R  IKT+    N+  E  +     L++  + Y I P IEE 
Sbjct: 455 SMVLYSKTSLSTIKEKPANRGKIKTLHFYKNKRQEAYKIAIDELNKKHQVYVIAPLIEES 514

Query: 496 KE-SNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +   ++R+ ++    L + F     + ++HG++   +K++++  FK G    LI+TTVIE
Sbjct: 515 EHFEDYRAAIKLHEELKDGFFKGFRVELLHGKLKPEEKDAILKDFKEGAIDCLISTTVIE 574

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VGID   A++IIIENA+ FGL+QLHQLRGRVGR    S  IL+ +  LS  +  R+  L 
Sbjct: 575 VGIDSPLATVIIIENADRFGLSQLHQLRGRVGRSSFDSYAILITNNNLSDTAKKRIEALL 634

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
            T+DGF IA+ D + R  GEILG +Q G
Sbjct: 635 KTDDGFEIAQIDFQLRGSGEILGTRQHG 662


>gi|294787301|ref|ZP_06752554.1| ATP-dependent DNA helicase RecG [Parascardovia denticolens F0305]
 gi|315227140|ref|ZP_07868927.1| DNA helicase RecG [Parascardovia denticolens DSM 10105]
 gi|294484657|gb|EFG32292.1| ATP-dependent DNA helicase RecG [Parascardovia denticolens F0305]
 gi|315119590|gb|EFT82723.1| DNA helicase RecG [Parascardovia denticolens DSM 10105]
          Length = 749

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 228/699 (32%), Positives = 347/699 (49%), Gaps = 73/699 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI--LLNDGTGE 100
           D L Y+P    D   R  I +I   +       + +  +  +  RR Y++   ++DG   
Sbjct: 32  DALTYYPFRVADPLPRGSIRQIKVGQKTAFAAKVRRVRTSSMNSRRGYRVEVQVDDGDAA 91

Query: 101 ITLLFF-YRK--TEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ---DV--- 151
            + +FF Y+K   + L   F E R +   G+       +   HP  +    +   DV   
Sbjct: 92  ASFVFFSYKKHYVDWLLGKFREKRLLVAAGEASIYGGSLQFTHPQVLMVGQEPGMDVATT 151

Query: 152 --NFPLI---EAVYSLPTGLSVDLFKKIIVEALSRLPVL-----PEWIEKDLLQKKSFPS 201
              F  +   + VY   + +S +   + I   L  +P+L     P+ I +++ ++     
Sbjct: 152 EEGFARLTEPQPVYHTSSRISSEHIHESI---LGLIPLLDPDSVPDIIPEEVRKEWGLLH 208

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG-- 259
             +A   IH P   ++F W      R   +E L  Q ALL  R++ ++      + E   
Sbjct: 209 RFDALKAIHKPGTTEEF-WKGIGSMR--SEEALVSQTALLQEREKMRESKSFACSGEAGE 265

Query: 260 -KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             + Q+ ++++PF  T  Q+  I+ I  DM Q   M R+LQG+VGSGKT+VAL +M  A 
Sbjct: 266 EDLVQRFIQSLPFKLTAGQKEVIERIQADMGQAYPMSRLLQGEVGSGKTVVALASMLRAA 325

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRKALERIAHGQA 376
           +AG QA+++AP  +LAQQH+E I+       I + ++  TGNM  A RRKAL   A G  
Sbjct: 326 QAGYQALLVAPTQVLAQQHHESIRAMLTQAGIDLPLVLLTGNMRLADRRKALAIPASGVP 385

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTL 435
            I I THA F  S Q  +L L ++DEQHRFGV+QR  + Q A   PH+L+MTATPIPR+ 
Sbjct: 386 CIAIATHAAFSHSFQAPRLALEVIDEQHRFGVEQRETIRQAADVIPHLLVMTATPIPRSA 445

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEGKKAYWICPQI 492
            +T  G++DIS +TE P+GRKPI +V++  +    + ++    +  +  G++ Y ICP+I
Sbjct: 446 AMTWFGNLDISWLTELPSGRKPITSVVVRESDGRTMGQMFLHARKRIEAGERVYVICPRI 505

Query: 493 EEKKES-------------------------------NFRSVVERFNSLHEHFTSSIAII 521
           +E +                                 +   + +R  +L +     I I+
Sbjct: 506 DEDQVDEDSQGGEDLLPLQFDQEGLPLDSSAPSQPLHSVEEMSQRLAALPQFQGVRIGIL 565

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            GR  +  K + M  F  G   LL+ATTVIEVG+DV  AS III +++HFGL+QLHQLRG
Sbjct: 566 TGRDDEESKAAAMKDFTQGRAPLLVATTVIEVGVDVPQASCIIIFDSDHFGLSQLHQLRG 625

Query: 582 RVGRGEEISSCILLYHPPLSKN---SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG--- 635
           RVGRG   S    +    LS     +  RL V+++T DG  IA+ DL  R  G++LG   
Sbjct: 626 RVGRGGTRSWAFFVTRVDLSDPDSLAARRLEVVRSTTDGAEIAKADLDLRGAGDVLGDSQ 685

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
                +  F + +      L+  AR  A+ IL  DP LT
Sbjct: 686 SGGQSISSFKLLRVVKDADLITRARSQAESILRADPALT 724


>gi|172040463|ref|YP_001800177.1| ATP-dependent DNA helicase [Corynebacterium urealyticum DSM 7109]
 gi|171851767|emb|CAQ04743.1| ATP-dependent DNA helicase [Corynebacterium urealyticum DSM 7109]
          Length = 742

 Score =  289 bits (740), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 174/472 (36%), Positives = 273/472 (57%), Gaps = 21/472 (4%)

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           EA   +P  P  ++   L +        A   IH P +    E    A ERL ++E L  
Sbjct: 230 EASDSVPAWPTGVDGAPLIR-----FDAALRGIHQPPE----EGPGAAIERLKFNEALEL 280

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ + L      +     ++ +  ++    + ++P+  ++ Q+SA   + + +       
Sbjct: 281 QLIMALRAADATRRTSPRVDALHSELLAAFIHSLPYRLSEGQKSAWDRVAEALDSSEPAN 340

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            +LQGDVGSGKTL+A +AM AA +AG Q   +AP  +LA QH + + +  +   I + ++
Sbjct: 341 LMLQGDVGSGKTLIAALAMVAAADAGLQCAFIAPTEVLAVQHAQTLTRLVEGLPITITVL 400

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG+     R ++L  I  GQAHI++GTHAL QDS++++ L LV+VDEQHRFGV+QR  L 
Sbjct: 401 TGSQSSDVRHRSLLDIISGQAHIVVGTHALIQDSVEFFNLGLVVVDEQHRFGVRQRDYLK 460

Query: 416 QKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---ID 469
            KA A   PH+L+MTATPIPR++ +T  GD++   +   P+GR  ++T ++   R   +D
Sbjct: 461 NKAAAGKTPHMLVMTATPIPRSVAMTMFGDLEPIFLPGLPSGRGEVRTAVVQAGRRAWVD 520

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTSSIAIIHGRMSDI 528
            + +R+   ++ G +A+ + P+IE   E    +  E+  S    H T  + ++HG+M+  
Sbjct: 521 RMWQRISEDVAAGHQAFVVVPRIE--GEDGVLAWAEKLASGPLAHCT--VDVLHGKMAPE 576

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +K + M  F  G   +L+ATTVIEVG+DV +A++++I +AE+FG++QLHQLRGR+GRG  
Sbjct: 577 EKAAAMAGFAEGRTDVLVATTVIEVGVDVPNATVMVIIDAENFGVSQLHQLRGRIGRGSA 636

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
              C+L         SY RL  +  T DGF +AE DL+QR EG+ILG  QSG
Sbjct: 637 DGWCMLHTTALPGSASYDRLESVAATTDGFALAELDLEQRTEGDILGDDQSG 688


>gi|257068997|ref|YP_003155252.1| RecG-like helicase [Brachybacterium faecium DSM 4810]
 gi|256559815|gb|ACU85662.1| RecG-like helicase [Brachybacterium faecium DSM 4810]
          Length = 739

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 207/714 (28%), Positives = 354/714 (49%), Gaps = 65/714 (9%)

Query: 22  KYSLFLSKIINCGNANE-----TRFID-LLFYHPSSFIDRHYRPKISEISE-ERIVTITG 74
           + S+ LS+++N   +        R +D +L + P  ++       + EI + E +  I  
Sbjct: 9   RGSMPLSELLNSTESRAMASFGVRDLDTMLRFAPRRYVVPAPLRSLREIHQGEEVSAIVE 68

Query: 75  YISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEML---KNVFFEGRKITVTGKI 129
             S H    ++ R  +  ++ ++DGT  + L FF  K   +   ++      +I V G +
Sbjct: 69  VTSVHDR-AMRSRHGFILEVTVSDGTETLPLTFFLTKKHQVQWHRDRLPVKARILVRGTV 127

Query: 130 --KKLKNRIIMVHPHY--IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
                +  + + HP Y  +    Q   +      VY L   +S    +    + L     
Sbjct: 128 GYDDYRGALQLAHPDYEPVEDTPQGRAWAQRPRPVYPLRRNISQKTMRAATEKGLEFADS 187

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L   + + +L ++  P +AEA  ++H P   +D   T      L ++E    Q      R
Sbjct: 188 LTRPVPEKVLSRRGLPPLAEAAQLVHRPLTVED---TRRGLAHLRFEEAFVLQAIFAQRR 244

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            Q ++     +  EG +     + +PF  T+ Q      I++ + + +    +LQGDVGS
Sbjct: 245 AQDERTPAPVLAAEGPLQGLFDQRLPFILTEGQREIGASIVERIGRGHPTSVLLQGDVGS 304

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQII-------VE 353
           GKT+VAL AM  AV++G QA ++AP  +LA+QH+      + + ++  Q+        V 
Sbjct: 305 GKTVVALRAMLRAVDSGHQAALLAPTEVLAEQHHRTLTTLLGELSRAGQLDAHPEATRVR 364

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+   AHRR+ L  +  GQA I++GTHAL  +++++  L LV++DEQHRFGV  R +
Sbjct: 365 LLTGSQRTAHRRETLLDVTSGQAGIVVGTHALLTENVEFASLGLVVIDEQHRFGVDHRRR 424

Query: 414 LTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII----PIN 466
           L  K  A   PHV++MTATPIPRT  L ++GD+D+  + E P  R  + + ++    P  
Sbjct: 425 LRTKGPAGQSPHVIVMTATPIPRTAALATVGDLDVLTLRESPGQRAGVTSFVVHEKLPAW 484

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKE---------------------SNFRSVVE 505
               + +R    ++  ++ + +C +I+E                        +  R V +
Sbjct: 485 E-QRMWQRAAEEIAADRQVFVVCARIDEDDAADDAPAPPVLDEYGRPQAPALAPARGVTQ 543

Query: 506 RFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
               L E      + + ++HGR++  +K+ +M     G   LL++TTVIEVG+DV +AS+
Sbjct: 544 TARRLAERAELAGARLGVLHGRLTGEEKQEIMGQMVRGEIDLLVSTTVIEVGVDVPNASV 603

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           +II +AE FG++QLHQLRGRVGRGE            + +     L  + +  DGF +AE
Sbjct: 604 MIILDAERFGVSQLHQLRGRVGRGEHAGIAFFDTSAEVGREHSAHLQRVADAADGFALAE 663

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTS 675
            DL +R  G+++G +QSG+ + L     L D+  +E AR+DA  ++  DP+LT+
Sbjct: 664 LDLHRRGAGDLVGEEQSGLQRTLTHLDVLRDAQAIERAREDAFAVVAADPELTA 717


>gi|325846657|ref|ZP_08169572.1| putative ATP-dependent DNA helicase RecG [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481415|gb|EGC84456.1| putative ATP-dependent DNA helicase RecG [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 659

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 182/530 (34%), Positives = 294/530 (55%), Gaps = 24/530 (4%)

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ-----DVNFPLIEAVYSLPTGLSVDLFK 172
           F  RK+ + G+  K   +I+     Y  HN +     D     I  +Y L   ++     
Sbjct: 95  FSPRKLKL-GQSYKFYTKIVKNGYEYECHNPEFTDIDDGRIGNIVPIYPLTKSITNKNLS 153

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
             I +AL+        ++KD+L K SF         IH P      +    A+  +   +
Sbjct: 154 DFIDQALNFFDQNEILLDKDILDKFSFSDKLSNLKEIHFPTS---LDRLKKAKSEIKIID 210

Query: 233 LLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            L   I + +M+K+   +++ +  +++     KIL ++ F  TKSQ +++ +IL D +  
Sbjct: 211 FLKELIFIYVMQKENSYQDLNLKFDLD-----KILNSLDFKLTKSQYNSLVEILNDCTSS 265

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
           N M R+L GDVGSGKT++ALIAM        Q+ +M P  +LA Q +E  K   ++  + 
Sbjct: 266 NIMNRLLCGDVGSGKTIIALIAMIIFSLNSYQSCMMVPTEVLAIQQFEKNKNLIESFGLR 325

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++T +       K  E+I +GQ  I+IGTHAL  D +++  L L++ DEQHRFGV+QR
Sbjct: 326 VELLTSSTKNKDSVK--EKIKNGQIDIVIGTHALIVDDVEFKNLKLIVADEQHRFGVRQR 383

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             L +K    + L MTATPIPRTL L     + +S+ITE P GR  + T ++ ++  D +
Sbjct: 384 QALYEKGNKANYLTMTATPIPRTLFLKMKNLLSLSQITELPKGRGQVITELVLMSMEDSL 443

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDK 530
             ++   L++G++ Y +   I  + E++  ++ +R+ +    FT   I  +HG++   +K
Sbjct: 444 FSKISNFLNQGRQVYVVSDSINSEDENSVENLYKRYKT---KFTDKRIEKLHGKLKADEK 500

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E+++  F +G   +LI+TTVIEVGIDV +A+ ++I NA +FGL+ LHQLRGR+GRGE  S
Sbjct: 501 ENILKEFSDGKIDVLISTTVIEVGIDVSNANCMVIYNANNFGLSSLHQLRGRIGRGEHES 560

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
            C L+       +  ++L+++KN+ DGF IA++DLK R  G+IL   Q G
Sbjct: 561 FCYLVSKKI---DQRSKLNIIKNSNDGFEIAKKDLKLRGAGKILSTIQHG 607


>gi|306992335|gb|ADN19284.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 451

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 172/458 (37%), Positives = 274/458 (59%), Gaps = 14/458 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+      +   A+ R  Y EL   
Sbjct: 60  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEA---YLEQAKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE F
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAERF 451


>gi|306992251|gb|ADN19242.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 175/456 (38%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992245|gb|ADN19239.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  286 bits (733), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 175/456 (38%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|323342033|ref|ZP_08082266.1| DNA helicase RecG [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464458|gb|EFY09651.1| DNA helicase RecG [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 652

 Score =  286 bits (732), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 177/511 (34%), Positives = 281/511 (54%), Gaps = 16/511 (3%)

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
           I+ +YS  +G+     +++I++ +  +  LP  I  +   +       +A   IH PR  
Sbjct: 127 IKPIYSQKSGIKQYEIERLILKIMENVS-LPNIIPVEFQDQYKLMDRFDAVKSIHMPRSE 185

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
            +          L Y+E LA  +++ L      +E G+    E     + +  +PF  T 
Sbjct: 186 TELHH---GLRTLKYEEFLAYHLSITLNNSD--REYGVSKLFERAKVLEEIEILPFKLTV 240

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q+ ++ DIL D+    +M R+LQGDVGSGKT+VA +A  A   AG Q   M P  +L  
Sbjct: 241 DQKQSLDDILNDLESSKKMNRLLQGDVGSGKTVVAFLAAYANYLAGYQVAFMVPTELLLM 300

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQA--HRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           QH    +K   +   +V      + Q   HR   ++ I  G+A +I GTHALFQ  + ++
Sbjct: 301 QHVRSFQKLFPDINCVV------LSQGIDHRDDVIQAIGTGEASVIFGTHALFQKDVVFH 354

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L I+DEQHRFGV+QR  L  K      L+++ATPIPRTL  +   D+D+S I   P+
Sbjct: 355 NLGLAIIDEQHRFGVEQRRALITKGKRIDTLMLSATPIPRTLAASLFFDLDVSTIATYPS 414

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            RK I+T  I  N +  +++ +   L   ++ Y +C  IEE + +  ++V     +L   
Sbjct: 415 HRKEIETHWIHENSLRSIMKPIHDRLKNQEQIYIVCAAIEEGERAGVKNVHTICENLKPV 474

Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           F+S ++  +HG+M    K S M SF +G   +LI+T+VIEVG+DV +A+++II NAE FG
Sbjct: 475 FSSYNVDFVHGKMPSELKASKMQSFVSGDIDILISTSVIEVGLDVHNANMMIIYNAEQFG 534

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LA LHQLRGRVGRG +   C LL      + ++ R++ L ++ DGF ++  D++ R  G+
Sbjct: 535 LATLHQLRGRVGRGGKQGVCYLLSSNESDETAH-RMNALVSSHDGFELSMIDMRLRGFGD 593

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +LG +QSG+P F++      +++L+ A+ DA
Sbjct: 594 VLGQRQSGLPNFILGDIIKDENILKQAKTDA 624


>gi|302669007|ref|YP_003832832.1| ATP-dependent DNA helicase RecG2 [Butyrivibrio proteoclasticus
           B316]
 gi|302397347|gb|ADL36250.1| ATP-dependent DNA helicase RecG2 [Butyrivibrio proteoclasticus
           B316]
          Length = 668

 Score =  286 bits (731), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 182/534 (34%), Positives = 292/534 (54%), Gaps = 28/534 (5%)

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           F G+ + V G++K       +V P  +F +  + N  ++  +Y    G      +K I E
Sbjct: 97  FIGKNVLVCGEMKYEYGSYKIVGPA-VFTDDVENNKRVL-PIYPKVAGTKPFYVRKKIYE 154

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
             S L    + +  D  +K +   I+ +   +HNP   ++ +    A ERL Y+++    
Sbjct: 155 --SCLEGEEDSLPSDFKKKHNLAGISWSLYELHNPSSYQNLK---KAEERLLYEDMFYFA 209

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
               L+ ++ +       NV   +   + +   ++ T  Q+SA   I   M+    +  +
Sbjct: 210 ALNELVNRKDEPNCAPMANVS--LCMLLTQRFGYALTPDQQSAFFKISSYMTNGQHLRAL 267

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVG GKT++A +AMA AV +G QA++MAP  +LA+QH   +KK     +  +    G
Sbjct: 268 VQGDVGCGKTIIAFLAMAQAVGSGKQAILMAPTKVLAEQHANQLKKLLPEYEDKIYYAGG 327

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
             P    +K L++I  G+   I+GTHAL  + + Y    +V++DE+H+FGV QR    ++
Sbjct: 328 KAP---LKKDLKKIETGEYLFIVGTHALISEKVHYKDPGIVVIDEEHKFGVDQRSAFEKQ 384

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGD-IDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               H + M+ATPIPRTL  T  GD  ++  I  KP GRKP+ TV    +  D +   ++
Sbjct: 385 KKGIHSISMSATPIPRTLAKTIYGDGTEVFIIRTKPNGRKPVFTVY---DNGDNIPLYVR 441

Query: 477 VVLSEGKKAYWICPQIE---EKKES--NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
             LS  ++ Y +CP IE   EK E   + +   E++ S       +I I++G+MS  D +
Sbjct: 442 TALSRNEQVYVVCPAIEVDDEKMEGVVSVKDAAEKYASWFPDI--NIGILNGKMSAADTK 499

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            V+D FKNG  ++LI+TTV+EVG+DV +A++I+++NAE FGLA +HQLRGRVGRG + S 
Sbjct: 500 KVLDDFKNGVTRILISTTVVEVGVDVPNATLIVLQNAERFGLAGMHQLRGRVGRGSKQSC 559

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
           C+L     +S     R+  L +T DGF IA+ DL+ RK G + G++QSG  K++
Sbjct: 560 CML-----ISAQENPRIHTLCSTTDGFEIAKMDLEMRKSGSLFGLEQSGFNKYV 608


>gi|306992463|gb|ADN19348.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 172/458 (37%), Positives = 274/458 (59%), Gaps = 14/458 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+      +   A+ R  Y EL   
Sbjct: 59  ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNE---AYLEQAKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE +
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAERW 450


>gi|306992219|gb|ADN19226.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992221|gb|ADN19227.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992223|gb|ADN19228.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 174/458 (37%), Positives = 273/458 (59%), Gaps = 14/458 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE  
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAERL 450


>gi|317506526|ref|ZP_07964323.1| ATP-dependent DNA helicase RecG [Segniliparus rugosus ATCC BAA-974]
 gi|316255165|gb|EFV14438.1| ATP-dependent DNA helicase RecG [Segniliparus rugosus ATCC BAA-974]
          Length = 760

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 214/725 (29%), Positives = 360/725 (49%), Gaps = 115/725 (15%)

Query: 55  RHY-----RP------KISEISEERIVTITGYISQHSSFQLQKRRPYK----ILLNDGTG 99
           RHY     RP      +++++ E   VT+   + + S  +  K  P K    + ++DG  
Sbjct: 36  RHYPRDYARPGQLLGNRLAQVGEH--VTLIAEVRKKSVMRF-KNDPSKKRMVLSVSDGIN 92

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI--------------- 144
              ++FF  K +  +    EG++    G++    N++ + HP +I               
Sbjct: 93  VYEVVFFNPK-KWTQEKLEEGQRYMFDGEVSMYANKLQLAHPGFILLPDPDAREQGVQEP 151

Query: 145 -------------FHNSQDVNFPL--------IEAVYSLPTGLSVDLFKKIIVEALSRLP 183
                        +  S D +  L        + AVY     +S    ++ +   L +L 
Sbjct: 152 GAGKITGVGQIAAYARSVDPSLQLDPSEWRSELMAVYPASKNVSSWDVRRYVEAVLDQLA 211

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            +P+ + + +  ++ F  + E+   +H P      +  + A++RL +DE LA Q+A    
Sbjct: 212 PVPDPLTEAMRAERGFLGLEESLRAVHTPESQ---DQVNRAKDRLRFDEALAVQLAFAKR 268

Query: 244 RKQFKKEIGIPIN--VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           R    K   +      +GK+A K    +PF  T+ Q +A  +I  D++    M R++ G+
Sbjct: 269 RAALAKAKALACQPLADGKVA-KFEARLPFQLTEDQRAARDEIDADLATSKPMSRLVHGE 327

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQI 350
           VGSGKT+V+L+AM   V+AG Q  ++AP  +LA QH+  ++K                 +
Sbjct: 328 VGSGKTVVSLLAMLRVVDAGAQCAMLAPTEVLAAQHHATLRKLLGPLGRGGELDGDPDGL 387

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            + ++TG+M  A R+ AL ++  G+A I++GTHAL  + + +  L L++VDEQHRFGV Q
Sbjct: 388 KIVLLTGSMGAAARKAALAQVVSGEASIVVGTHALLSEKVMFADLGLLVVDEQHRFGVDQ 447

Query: 411 RLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           R  L  +      PH+L+MTATPIPRT+ +T  G++++S I   P  R  I + ++   R
Sbjct: 448 RDALRGRGVDGRLPHLLVMTATPIPRTVAMTVFGELEVSTIKHLPKNRAGISSSVVDEKR 507

Query: 468 ----IDEVIERLKVVLSEGKKAYWICPQIEE--------------------KKESNFRSV 503
               +  V ER++   +EG++AY +C +I++                    K     R+V
Sbjct: 508 KPDWVRRVWERMREEAAEGRQAYVVCARIQDKEKEEEKKPAKAKPKPAPEQKGPPPPRAV 567

Query: 504 VERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           V+ F  L     + +   ++HG +   +K+  M SF +G  ++L++TTVIEVG+DV +++
Sbjct: 568 VDVFEELSSGPLAGLRLGLMHGGLPPAEKDKAMASFASGETQVLVSTTVIEVGVDVPNST 627

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
           +++I +A+ FG++QLHQLRGRVGRG     CI +        S  RL  + +  DGF +A
Sbjct: 628 MMVILDADRFGISQLHQLRGRVGRGGHPGLCIFVTR--AGGASLDRLQSVASCMDGFELA 685

Query: 622 EEDLKQRKEGEILGIKQSGMPKFL-----------IAQP-ELHDSLLEIARKDAKHILTQ 669
           E DLK R EG+++G+ QSG  + L           IA   E+ D+L E A+ +A    T 
Sbjct: 686 ELDLKIRGEGDVIGVAQSGRSRSLRLLSVTRDEEIIADAREVADALAEGAQGEALLAETL 745

Query: 670 DPDLT 674
           D  LT
Sbjct: 746 DSVLT 750


>gi|306992253|gb|ADN19243.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 174/455 (38%), Positives = 272/455 (59%), Gaps = 14/455 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMTDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           M+ F NG   +L++TTVIEVG++V +A+++I+ENA
Sbjct: 413 MEEFVNGEIDILVSTTVIEVGVNVPNATVMIVENA 447


>gi|306992391|gb|ADN19312.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 173/457 (37%), Positives = 273/457 (59%), Gaps = 14/457 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L KK    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALKDYVQEVEEFFDEEFLFKKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 449


>gi|306992427|gb|ADN19330.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992429|gb|ADN19331.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992447|gb|ADN19340.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992449|gb|ADN19341.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992451|gb|ADN19342.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992469|gb|ADN19351.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992471|gb|ADN19352.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992243|gb|ADN19238.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 174/456 (38%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992225|gb|ADN19229.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992227|gb|ADN19230.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992229|gb|ADN19231.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992231|gb|ADN19232.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992233|gb|ADN19233.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 174/456 (38%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|262195552|ref|YP_003266761.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365]
 gi|262078899|gb|ACY14868.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM
           14365]
          Length = 782

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 221/740 (29%), Positives = 359/740 (48%), Gaps = 91/740 (12%)

Query: 9   LFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFID-RHYRPKISEIS 65
           L AP++T  G+G   S  L++  +   G        DLL+  P  + D R   P    I+
Sbjct: 29  LDAPVTTLPGIGPSLSARLAERGLHTLG--------DLLWLVPRRYDDARRVTPLGQAIA 80

Query: 66  EER----IVTITGYISQHSSFQLQKRRPY---KILLNDGTGEITLLFFYRKTEMLKNVFF 118
           E R      T T  +   S F  + R+ +   ++   D      L+ ++   E L   F 
Sbjct: 81  EARREPSARTTTLGVVLASRFHRRGRKRWFDARLAGTDDPEARLLVRWFGARESLAKRFP 140

Query: 119 EGRKITVTGKIK------KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFK 172
           +G ++ ++G++       +++N  I+                ++     +P G++     
Sbjct: 141 KGARVVLSGRLDCRTVGAEMQNPDILATTTAGGDRVSTAGGDILTRYPDVP-GVAAATLA 199

Query: 173 KIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK-----------AKDFEW 220
           K   EA+ R L  + + +   L  +     ++EA   +H P             + D  W
Sbjct: 200 KACREAVRRGLSQVVDAVPAALAARLDLVPLSEALRHLHEPPAGLSVDEVAALDSADSAW 259

Query: 221 TSPARERLAYDEL--LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
                 RLA++EL  L   +A      +  + +  P     + A+ + R +P+  T +Q+
Sbjct: 260 ----HRRLAFEELFLLGLVVARRRHLHRLGRAVPCPALPWQERAELLGRALPYQLTGAQQ 315

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI+ I +++++   M R+LQGDVG+GKT VA  A   A  AG Q   MAP  +LA+QH 
Sbjct: 316 RAIEIIGRELAEAVPMNRLLQGDVGAGKTAVAFAAAQQACSAGRQVAFMAPTALLAEQHA 375

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             +  +     +   ++T   P+  R + L  +   Q  ++IGTHAL  + + +  L LV
Sbjct: 376 ATLMPWCIALGMRATLLTAATPRKTRAEVLALLRAHQLDLVIGTHALLSEGVDFAALGLV 435

Query: 399 IVDEQHRFGVQQRLKLTQKA------------------------TAPHVLLMTATPIPRT 434
           I+DEQHRFGV QR+ L  K                          +PH+L+MTATPIPRT
Sbjct: 436 IIDEQHRFGVAQRVGLRAKGEGEGDSAVPDENVRSSEKDASDAGGSPHLLVMTATPIPRT 495

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIP-INRIDEVIERLKVVLSEGKKAYWICPQIE 493
           L LT+ GD+D++ + E P GR+P +T+++   +  D     ++  L  G++ + +CP +E
Sbjct: 496 LALTAYGDLDVTVLDELPPGRQPPRTLVLAGSDGRDRAHAMVRERLQAGERIFVVCPLVE 555

Query: 494 -------------------EKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESV 533
                               +  ++  +  ER   L   F  + + ++HGRM   +++ V
Sbjct: 556 PAEGERDAETAPADSLQGQAQARADATTTAER---LQRTFAPARVGLVHGRMVQAERDRV 612

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F+ G   +L+ATTVIEVG+DV +A++++I  A  FGLAQLHQLRGRVGRG   S C+
Sbjct: 613 MGDFRAGRVDILVATTVIEVGVDVPEATVMVILEAHCFGLAQLHQLRGRVGRGGGSSLCL 672

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+     +  +  RL+ +  T DGF IAEEDL+ R  GE+LG++QSG+P+        H 
Sbjct: 673 LMTRRQRTAEAEQRLATMAATCDGFRIAEEDLRLRGPGELLGVRQSGLPRLRFGDLRAHG 732

Query: 654 SLLEIARKDAKHILTQDPDL 673
           +LL  AR  A+ +L  DP+L
Sbjct: 733 ALLVAARDAAETLLAADPEL 752


>gi|306992495|gb|ADN19364.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992465|gb|ADN19349.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992239|gb|ADN19236.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992241|gb|ADN19237.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 451

 Score =  285 bits (728), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 174/458 (37%), Positives = 273/458 (59%), Gaps = 14/458 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE  
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAERL 451


>gi|306992249|gb|ADN19241.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  285 bits (728), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 174/456 (38%), Positives = 272/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++ GDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVHGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992393|gb|ADN19313.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L KK    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALKDYVQEVEEFFDEEFLFKKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992237|gb|ADN19235.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 174/456 (38%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992305|gb|ADN19269.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992307|gb|ADN19270.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992315|gb|ADN19274.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992331|gb|ADN19282.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992485|gb|ADN19359.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992487|gb|ADN19360.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992441|gb|ADN19337.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+      +   A+ R  Y EL   
Sbjct: 60  ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNE---AYLEQAKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992489|gb|ADN19361.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992313|gb|ADN19273.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992333|gb|ADN19283.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992309|gb|ADN19271.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  284 bits (727), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992295|gb|ADN19264.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992317|gb|ADN19275.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992321|gb|ADN19277.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992323|gb|ADN19278.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992325|gb|ADN19279.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992327|gb|ADN19280.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992297|gb|ADN19265.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992301|gb|ADN19267.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992303|gb|ADN19268.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992479|gb|ADN19356.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992247|gb|ADN19240.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 442

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 174/450 (38%), Positives = 270/450 (60%), Gaps = 14/450 (3%)

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182
            GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   +
Sbjct: 1   NGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 58

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   Q+AL L
Sbjct: 59  QEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFL 115

Query: 243 MRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           M++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M R++QGD
Sbjct: 116 MKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQGD 172

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  
Sbjct: 173 VGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISP 232

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LTQK   P
Sbjct: 233 SNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQKGENP 292

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +
Sbjct: 293 DVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKK 352

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
           G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F N
Sbjct: 353 GRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVN 412

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           G   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 GKIDILVSTTVIEVGVNVPNATVMIVENAE 442


>gi|306992493|gb|ADN19363.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 445

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 173/451 (38%), Positives = 271/451 (60%), Gaps = 14/451 (3%)

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181
           + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   
Sbjct: 3   INGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDY 60

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   Q+AL 
Sbjct: 61  VQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKHRFKYQELFLLQMALF 117

Query: 242 LMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M R++QG
Sbjct: 118 LVKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQG 174

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++ 
Sbjct: 175 DVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSIS 234

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LTQK   
Sbjct: 235 PSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQKGEN 294

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + 
Sbjct: 295 PDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVK 354

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFK 538
           +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F 
Sbjct: 355 KGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFV 414

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 415 NGKIDILVSTTVIEVGVNVPNATVMIVENAE 445


>gi|296393416|ref|YP_003658300.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296180563|gb|ADG97469.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 764

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 194/647 (29%), Positives = 331/647 (51%), Gaps = 90/647 (13%)

Query: 82  FQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
           F+   R+   +L ++DGT    ++FF  K +  +    +G++    G++    +++ + H
Sbjct: 74  FKSDPRKMRMVLKVSDGTNVYEVVFFNPK-KWTQEKLNKGQRYMFDGEVSTYGSKLQLAH 132

Query: 141 PHYI---------------------FHNSQDVNFPL--------IEAVYSLPTGLSVDLF 171
           P +I                     +  S D    L        + AVY     +S    
Sbjct: 133 PGFILLPDAPAAVDGKVTGSGQIAAYARSVDPELQLDPSEWRSELMAVYPASKNVSSWDL 192

Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
           ++ I   L RL  + + + + +  ++ F  + +A   +HNP   +  E  + A+ RL +D
Sbjct: 193 RRHIGTVLDRLAPIEDPLTESMRAQRGFLGLEQALRAVHNP---QSVEQVAAAQARLRFD 249

Query: 232 ELLAGQIALLLMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
           E LA Q A    R           P + +G +A K    +PF  T+ Q++   +I  D++
Sbjct: 250 EALAVQFAFAKRRAALAHATALACPPSPQGSVA-KFESRLPFQLTEDQQAVRCEIDADLA 308

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY----- 344
           +   M R+L G+VGSGKT+V+L+AM   ++AG Q  ++AP  +LA QH+  ++K      
Sbjct: 309 KPVPMSRLLHGEVGSGKTVVSLLAMLRVIDAGCQCALLAPTEVLAAQHHATLRKLLGPLG 368

Query: 345 ------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                      + + ++TG+M  A R+ AL ++A G+A+I+IGTHAL  + + +  L LV
Sbjct: 369 RGGELDGDPDGLRIVLLTGSMGAAARKAALAQVASGEANIVIGTHALLSEKVVFADLGLV 428

Query: 399 IVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
           +VDEQHRFGV QR  L  +      PH+L+MTATPIPRT+ +T  G++++S I   P  R
Sbjct: 429 VVDEQHRFGVDQRDALRGRGAGGRLPHLLVMTATPIPRTVAMTVFGELEVSTIKRLPTNR 488

Query: 456 KPIKTVIIPINRIDEVI----ERLKVVLSEGKKAYWICPQIEE----KKESN-------- 499
             + + ++   R  E +    ER++  +S G++AY +C +I++    +K+S+        
Sbjct: 489 AGVTSSVVDEKRKPEWLRRAWERVREEVSAGRQAYVVCARIQDPGAQEKDSDAAKDKKTG 548

Query: 500 -------------------FRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFK 538
                               R+ V+    L     + +   ++HG +   +K+  M SF 
Sbjct: 549 AAKKPAKPKQPEEKKGPPPPRAAVDVHAELSGGALAGVRLGLMHGALPAAEKDQAMASFS 608

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++L++TTVIEVG+DV +++++++ +A+ FG++QLHQLRGRVGRGE    C  L+  
Sbjct: 609 AGETQVLVSTTVIEVGVDVPNSTVMVVLDADRFGISQLHQLRGRVGRGEHPGLC--LFTT 666

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
            L   +  RL  +    DGF +AE DLK R EG+++G+ QSG  + L
Sbjct: 667 RLGGAALARLEQVAACLDGFELAELDLKIRGEGDVIGVAQSGRSRSL 713


>gi|306992491|gb|ADN19362.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  283 bits (725), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 272/455 (59%), Gaps = 14/455 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKHRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           M+ F NG   +L++TTVIEVG++V +A+++I+ENA
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENA 447


>gi|306992467|gb|ADN19350.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  283 bits (725), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 172/451 (38%), Positives = 271/451 (60%), Gaps = 14/451 (3%)

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181
           + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   
Sbjct: 5   INGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDY 62

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   Q+AL 
Sbjct: 63  VQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALF 119

Query: 242 LMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M R++QG
Sbjct: 120 LMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQG 176

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++ 
Sbjct: 177 DVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSIS 236

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K   
Sbjct: 237 PSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGEN 296

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + 
Sbjct: 297 PDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVK 356

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFK 538
           +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F 
Sbjct: 357 KGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFV 416

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 417 NGKIDILVSTTVIEVGVNVPNATVMIVENAE 447


>gi|306992187|gb|ADN19210.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  283 bits (725), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 173/458 (37%), Positives = 273/458 (59%), Gaps = 14/458 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE  
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAERL 450


>gi|306992337|gb|ADN19285.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992343|gb|ADN19288.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992349|gb|ADN19291.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992351|gb|ADN19292.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992367|gb|ADN19300.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992369|gb|ADN19301.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  283 bits (724), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFANGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992211|gb|ADN19222.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  283 bits (724), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992365|gb|ADN19299.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  283 bits (724), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 172/457 (37%), Positives = 273/457 (59%), Gaps = 14/457 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 414 MEEFANGKIDILVSTTVIEVGVNVPNATVMIVENAER 450


>gi|306992189|gb|ADN19211.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992191|gb|ADN19212.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992193|gb|ADN19213.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992195|gb|ADN19214.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992197|gb|ADN19215.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  283 bits (724), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|212696071|ref|ZP_03304199.1| hypothetical protein ANHYDRO_00607 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676700|gb|EEB36307.1| hypothetical protein ANHYDRO_00607 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 439

 Score =  283 bits (724), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 155/378 (41%), Positives = 236/378 (62%), Gaps = 9/378 (2%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           KIL ++ F  TKSQ +++ +IL D S  N M R+L GDVGSGKT+VALIAM        Q
Sbjct: 18  KILNSLDFKLTKSQYNSLSEILDDCSSSNIMNRLLCGDVGSGKTIVALIAMIIFSLNSYQ 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +M P  +LA Q +E  K   ++  + VE++T +       K  E+I +GQ  I+IGTH
Sbjct: 78  ACMMVPTEVLAIQQFEKNKNLIESFGLRVELLTSSTKNKDSVK--EKIKNGQIDIVIGTH 135

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
           AL  D +++  L L++ DEQHRFGV+QR  L +K    + L MTATPIPRTL L     +
Sbjct: 136 ALIVDDVEFKNLKLIVADEQHRFGVRQRQALYEKGNKANYLTMTATPIPRTLFLKMKNLL 195

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
            +S+ITE P GR  + T ++ ++  D +  ++   L++G++ Y +   I+ + E++  ++
Sbjct: 196 SLSQITELPKGRGQVITELVLMSMEDSLFSKISNFLNQGRQVYVVSDSIDSEDENSVENL 255

Query: 504 VERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +R+ +    FT   I  +HG++   +KE+++  F +G   +LI+TTVIEVGIDV +A+ 
Sbjct: 256 YKRYKT---KFTDKRIEKLHGKLKADEKENILKEFSDGKIDVLISTTVIEVGIDVSNANC 312

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++I NA +FGL+ LHQLRGR+GRGE  S C L+       +  ++L+++KN+ DGF IA+
Sbjct: 313 MVIYNANNFGLSSLHQLRGRIGRGEHESFCYLVSKKI---DQRSKLNIIKNSNDGFEIAK 369

Query: 623 EDLKQRKEGEILGIKQSG 640
           +DLK R  G+IL   Q G
Sbjct: 370 KDLKLRGAGKILSTIQHG 387


>gi|306992359|gb|ADN19296.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992361|gb|ADN19297.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992363|gb|ADN19298.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  283 bits (724), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 414 MEEFANGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992443|gb|ADN19338.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992445|gb|ADN19339.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  283 bits (724), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 172/455 (37%), Positives = 272/455 (59%), Gaps = 14/455 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           M+ F NG   +L++TTVIEVG++V +A+++I+ENA
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENA 447


>gi|306992199|gb|ADN19216.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992201|gb|ADN19217.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992203|gb|ADN19218.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992205|gb|ADN19219.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992207|gb|ADN19220.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992213|gb|ADN19223.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992215|gb|ADN19224.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992265|gb|ADN19249.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  283 bits (724), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992345|gb|ADN19289.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992347|gb|ADN19290.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992353|gb|ADN19293.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992355|gb|ADN19294.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992357|gb|ADN19295.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  283 bits (724), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 172/457 (37%), Positives = 273/457 (59%), Gaps = 14/457 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 413 MEEFANGKIDILVSTTVIEVGVNVPNATVMIVENAER 449


>gi|306992339|gb|ADN19286.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  283 bits (724), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFANGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992269|gb|ADN19251.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 451

 Score =  283 bits (724), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 172/458 (37%), Positives = 273/458 (59%), Gaps = 14/458 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE  
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAERL 451


>gi|306992473|gb|ADN19353.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  283 bits (723), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 173/456 (37%), Positives = 272/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    + I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQEIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992183|gb|ADN19208.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 451

 Score =  283 bits (723), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992271|gb|ADN19252.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992277|gb|ADN19255.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  283 bits (723), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 172/458 (37%), Positives = 273/458 (59%), Gaps = 14/458 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE  
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAERL 450


>gi|306992439|gb|ADN19336.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  283 bits (723), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 172/455 (37%), Positives = 272/455 (59%), Gaps = 14/455 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           M+ F NG   +L++TTVIEVG++V +A+++I+ENA
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENA 448


>gi|306992263|gb|ADN19248.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992255|gb|ADN19244.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 173/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992275|gb|ADN19254.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992279|gb|ADN19256.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992281|gb|ADN19257.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992291|gb|ADN19262.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992481|gb|ADN19357.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 171/455 (37%), Positives = 272/455 (59%), Gaps = 14/455 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           M+ F NG   +L++TTVIEVG++V +A+++I+ENA
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENA 447


>gi|306992395|gb|ADN19314.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992397|gb|ADN19315.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992399|gb|ADN19316.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992311|gb|ADN19272.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 445

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 171/451 (37%), Positives = 271/451 (60%), Gaps = 14/451 (3%)

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181
           + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   
Sbjct: 3   INGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDY 60

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   Q+AL 
Sbjct: 61  VQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALF 117

Query: 242 LMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M R++QG
Sbjct: 118 LMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQG 174

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++ 
Sbjct: 175 DVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSIS 234

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K   
Sbjct: 235 PSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGEN 294

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + 
Sbjct: 295 PDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVK 354

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFK 538
           +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F 
Sbjct: 355 KGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKVMEEFV 414

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 415 NGKIDILVSTTVIEVGVNVPNATVMIVENAE 445


>gi|306992329|gb|ADN19281.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 171/455 (37%), Positives = 272/455 (59%), Gaps = 14/455 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           M+ F NG   +L++TTVIEVG++V +A+++I+ENA
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENA 447


>gi|310830985|ref|YP_003966086.1| ATP-dependent DNA helicase RecG [Paenibacillus polymyxa SC2]
 gi|309250452|gb|ADO60018.1| ATP-dependent DNA helicase RecG [Paenibacillus polymyxa SC2]
          Length = 664

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 196/620 (31%), Positives = 322/620 (51%), Gaps = 38/620 (6%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           +L  Y P  + D      I ++ +  +V + G I +   ++   ++  K+ ++D +G + 
Sbjct: 26  ELSRYFPRKYHDFRTITPIKQLKDGEVVAVVGKIQEIKRYE---KKFIKVKVSDDSGGVL 82

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKK-LKNRII-MVHPHYIFHNSQDVNFPLIEAVY 160
            + ++ K  + K    EG      GK+++ LK R   MV+P Y  H  +  +   +  VY
Sbjct: 83  HVIWFHKPYVHK-WLKEGETYIFCGKVQEDLKFRSKNMVNPLYFSHEIK--HLQRLVPVY 139

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
               G++ +     I  +LS +    E +E  +L         +A   IH P    + E 
Sbjct: 140 PKIRGMADEYLMNSIQSSLSVMS-QQENLEPSVLATFGLLKSGKALKAIHQPENEDELER 198

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
              A+ R  +D+L    + +         +    +N +  +    +R +PF  T  Q   
Sbjct: 199 ---AKTRFIFDDLFEYSMQMHQYESLSSSKSPFLMN-QFSVVTDFMRRLPFELTDGQREV 254

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           ++ I        R+  ++QGDVG GKT+VA++ M  A E G Q+ +MAP  +LA+QHYE 
Sbjct: 255 LRSISLKAKLGQRVNALVQGDVGCGKTIVAILLMVVAAENGFQSALMAPTHVLAKQHYEE 314

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           + +  + T   V  +TG+     ++  L  +  G+ H+I+GTH++    ++   L L IV
Sbjct: 315 LAERLKGTSFKVAFLTGDTKIREKKAILNGLDTGEIHMIVGTHSIIGKDVKIPNLALSIV 374

Query: 401 DEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGD-IDISKITEKPAGRKPI 458
           DE+HRFGV QR +L +KA    H + M+ATPIPRTL L   GD +D+  I   P GRKP+
Sbjct: 375 DEEHRFGVVQRNQLREKARQGVHHISMSATPIPRTLALAMWGDQVDVYTIKTLPKGRKPV 434

Query: 459 KTVIIP-----INRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---SNFRSVVERFNSL 510
           +TV++       N I++ IE+       G +AY +CP IE+ +    S+  SV + F  +
Sbjct: 435 RTVLLSDEKRCFNGIEQQIEK-------GHQAYVVCPLIEDSESESMSDVDSVEKTFEKM 487

Query: 511 HEHFTSS----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +HF+ +    I++I G+M   +    +  F      +LI+TT+IEVG++V +A++++++
Sbjct: 488 KQHFSRNPKVKISLISGKMKPAEIAEEILRFTRNETNVLISTTIIEVGVNVPNATMMVVK 547

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           NAE FGLAQLHQLRGRVGRG   S C+L  H    K    +L  +  T DGF IA+ DL+
Sbjct: 548 NAERFGLAQLHQLRGRVGRGNFESFCVL--HS--EKEGNPKLQAMVETTDGFKIAKRDLE 603

Query: 627 QRKEGEILGIKQSGMPKFLI 646
            R  G+ +G KQSG   +++
Sbjct: 604 LRGTGDFIGTKQSGDNNYVM 623


>gi|306992235|gb|ADN19234.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 272/455 (59%), Gaps = 14/455 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 QKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           M+ F NG   +L++TTVIEVG++V +A+++I+ENA
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENA 447


>gi|306992285|gb|ADN19259.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992289|gb|ADN19261.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992483|gb|ADN19358.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 171/455 (37%), Positives = 272/455 (59%), Gaps = 14/455 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           M+ F NG   +L++TTVIEVG++V +A+++I+ENA
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENA 448


>gi|306992455|gb|ADN19344.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992459|gb|ADN19346.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 442

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 172/450 (38%), Positives = 270/450 (60%), Gaps = 14/450 (3%)

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182
            GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   +
Sbjct: 1   NGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 58

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   Q+AL L
Sbjct: 59  QEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFL 115

Query: 243 MRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           M++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M R++QGD
Sbjct: 116 MKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGD 172

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  
Sbjct: 173 VGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISP 232

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K   P
Sbjct: 233 SNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENP 292

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +
Sbjct: 293 DVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKK 352

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
           G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F N
Sbjct: 353 GRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVN 412

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           G   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 GKIDILVSTTVIEVGVNVPNATVMIVENAE 442


>gi|306992453|gb|ADN19343.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 272/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVI VG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIGVGVNVPNATVMIVENAE 448


>gi|306992287|gb|ADN19260.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 273/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992457|gb|ADN19345.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 443

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 172/450 (38%), Positives = 270/450 (60%), Gaps = 14/450 (3%)

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182
            GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   +
Sbjct: 1   NGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 58

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   Q+AL L
Sbjct: 59  QEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFL 115

Query: 243 MRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           M++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M R++QGD
Sbjct: 116 MKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGD 172

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  
Sbjct: 173 VGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISP 232

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K   P
Sbjct: 233 SNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENP 292

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +
Sbjct: 293 DVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKK 352

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
           G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F N
Sbjct: 353 GRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVN 412

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           G   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 GKIDILVSTTVIEVGVNVPNATVMIVENAE 442


>gi|306992217|gb|ADN19225.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 442

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 173/450 (38%), Positives = 270/450 (60%), Gaps = 14/450 (3%)

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182
            GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   +
Sbjct: 1   NGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 58

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   Q+AL L
Sbjct: 59  QEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFL 115

Query: 243 MRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M R++QGD
Sbjct: 116 VKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQGD 172

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  
Sbjct: 173 VGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISP 232

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LTQK   P
Sbjct: 233 SNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQKGENP 292

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +
Sbjct: 293 DVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKK 352

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
           G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F N
Sbjct: 353 GRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVN 412

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           G   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 GKIDILVSTTVIEVGVNVPNATVMIVENAE 442


>gi|306992401|gb|ADN19317.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992407|gb|ADN19320.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992419|gb|ADN19326.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992421|gb|ADN19327.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992423|gb|ADN19328.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 272/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  KKI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIKKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALKDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F N    +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNREIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992425|gb|ADN19329.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 172/457 (37%), Positives = 272/457 (59%), Gaps = 14/457 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  KKI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIKKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALKDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           M+ F N    +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 413 MEEFVNREIDILVSTTVIEVGVNVPNATVMIVENAER 449


>gi|306992341|gb|ADN19287.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 171/455 (37%), Positives = 272/455 (59%), Gaps = 14/455 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           M+ F NG   +L++TTVIEVG++V +A+++I+ENA
Sbjct: 413 MEEFANGKIDILVSTTVIEVGVNVPNATVMIVENA 447


>gi|306992409|gb|ADN19321.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992413|gb|ADN19323.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992415|gb|ADN19324.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992417|gb|ADN19325.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 171/456 (37%), Positives = 272/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  KKI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIKKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+      +   A+ R  Y EL   
Sbjct: 60  ALKDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEA---YLEQAKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F N    +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 414 MEEFVNREIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992185|gb|ADN19209.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 172/451 (38%), Positives = 271/451 (60%), Gaps = 14/451 (3%)

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181
           + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   
Sbjct: 5   INGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDY 62

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   Q+AL 
Sbjct: 63  VQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALF 119

Query: 242 LMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M R++QG
Sbjct: 120 LVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQG 176

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++ 
Sbjct: 177 DVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSIS 236

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K   
Sbjct: 237 PSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGEN 296

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + 
Sbjct: 297 PDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVK 356

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFK 538
           +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F 
Sbjct: 357 KGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFV 416

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 417 NGKIDILVSTTVIEVGVNVPNATVMIVENAE 447


>gi|306992209|gb|ADN19221.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992261|gb|ADN19247.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992267|gb|ADN19250.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 172/455 (37%), Positives = 272/455 (59%), Gaps = 14/455 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           M+ F NG   +L++TTVIEVG++V +A+++I+ENA
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENA 447


>gi|306992299|gb|ADN19266.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 446

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 170/450 (37%), Positives = 270/450 (60%), Gaps = 14/450 (3%)

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181
           + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   
Sbjct: 5   INGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDY 62

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   Q+AL 
Sbjct: 63  VQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALF 119

Query: 242 LMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M R++QG
Sbjct: 120 LMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQG 176

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++ 
Sbjct: 177 DVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSIS 236

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K   
Sbjct: 237 PSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGEN 296

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + 
Sbjct: 297 PDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVK 356

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFK 538
           +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F 
Sbjct: 357 KGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKVMEEFV 416

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           NG   +L++TTVIEVG++V +A+++I+ENA
Sbjct: 417 NGKIDILVSTTVIEVGVNVPNATVMIVENA 446


>gi|306992181|gb|ADN19207.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 444

 Score =  280 bits (717), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 172/450 (38%), Positives = 270/450 (60%), Gaps = 14/450 (3%)

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182
            GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   +
Sbjct: 1   NGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 58

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   Q+AL L
Sbjct: 59  QEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFL 115

Query: 243 MRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M R++QGD
Sbjct: 116 VKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQGD 172

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  
Sbjct: 173 VGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISP 232

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K   P
Sbjct: 233 SNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENP 292

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +
Sbjct: 293 DVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKK 352

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
           G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F N
Sbjct: 353 GRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVN 412

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           G   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 GKIDILVSTTVIEVGVNVPNATVMIVENAE 442


>gi|306992461|gb|ADN19347.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 441

 Score =  280 bits (717), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 171/449 (38%), Positives = 269/449 (59%), Gaps = 14/449 (3%)

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182
            GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   +
Sbjct: 1   NGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 58

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   Q+AL L
Sbjct: 59  QEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFL 115

Query: 243 MRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           M++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M R++QGD
Sbjct: 116 MKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGD 172

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  
Sbjct: 173 VGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISP 232

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K   P
Sbjct: 233 SNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENP 292

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +
Sbjct: 293 DVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKK 352

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
           G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F N
Sbjct: 353 GRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVN 412

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENA 568
           G   +L++TTVIEVG++V +A+++I+ENA
Sbjct: 413 GKIDILVSTTVIEVGVNVPNATVMIVENA 441


>gi|306992475|gb|ADN19354.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 430

 Score =  280 bits (716), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 168/432 (38%), Positives = 260/432 (60%), Gaps = 12/432 (2%)

Query: 144 IFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFP 200
           +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   +  + E+ +++ L +K   
Sbjct: 5   VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEVEEFFDEEFLFEKGLM 64

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEG 259
            I  A   I+ P+     E    A+ R  Y EL   Q+AL LM++  K + GI    VE 
Sbjct: 65  DIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFLMKRSVKGKKGIKFERVEL 121

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           K     L  +PF  T +Q   +K+I+ DM+    M R++QGDVGSGKT+VA  +M  A++
Sbjct: 122 K---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGDVGSGKTVVAACSMYIAIK 178

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  +++++ LE+I +G   I+
Sbjct: 179 NGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKKEVLEKIKNGDYDIV 238

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K   P VL+MTATPIPRTL L  
Sbjct: 239 IGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENPDVLVMTATPIPRTLALIL 298

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
            GD+DIS I + P GRK +KT +I  +   +  E     + +G++ Y +CP IEE  + N
Sbjct: 299 YGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQVYVVCPLIEESDKIN 358

Query: 500 FRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             S    +  +++     + + ++HG+M+D DKE VM+ F NG   +L++TTVIEVG++V
Sbjct: 359 AMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVNGKIDILVSTTVIEVGVNV 418

Query: 558 VDASIIIIENAE 569
            +A+++I+ENAE
Sbjct: 419 PNATVMIVENAE 430


>gi|306992371|gb|ADN19302.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  280 bits (716), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 171/456 (37%), Positives = 272/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F NG   +L++TTVI VG++V +A+++I+ENAE
Sbjct: 413 MEEFVNGKIDILVSTTVIGVGVNVPNATVMIVENAE 448


>gi|306992405|gb|ADN19319.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  280 bits (716), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 170/455 (37%), Positives = 271/455 (59%), Gaps = 14/455 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  KKI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIKKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+      +   A+ R  Y EL   
Sbjct: 59  ALKDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNE---AYLEQAKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           M+ F N    +L++TTVIEVG++V +A+++I+ENA
Sbjct: 413 MEEFVNREIDILVSTTVIEVGVNVPNATVMIVENA 447


>gi|257066532|ref|YP_003152788.1| helicase domain-containing protein [Anaerococcus prevotii DSM
           20548]
 gi|256798412|gb|ACV29067.1| helicase domain protein [Anaerococcus prevotii DSM 20548]
          Length = 663

 Score =  280 bits (715), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 198/641 (30%), Positives = 324/641 (50%), Gaps = 45/641 (7%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L++ +G+G K S    ++        +   DL  Y+P  + DR     I +I +      
Sbjct: 3   LTSLKGIGDKKSKDFKRL------GISSVSDLYNYYPREYEDRSKLKSIVDIDDNN---- 52

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNV---FFEGR---KITVT 126
             Y  +  S +L ++       N G   I+ ++ + +    +N+   +F  R   +  V 
Sbjct: 53  KHYFVRKISSRLYQK-------NFGKMTISYIYAFEEKSQFRNIRLIWFNDRFTPRRLVR 105

Query: 127 GKIKKLKNRIIMVHPHY-----IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           G+  K    +   +  Y     +F    D     I ++Y L  G+S    ++ +  AL+ 
Sbjct: 106 GRTYKFYTSVSKKNAFYEAGNPLFCEMDDDEIGSIASIYPLTKGISNKQIRQFMSRALAY 165

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
                E +   +L+  S     +    IH P      E  + A+ ++   +LL     L 
Sbjct: 166 FDRREEILSDTILEGFSLNKRYDNLKEIHFPTSV---EGLTKAKSQIKIVDLLKDLCFLD 222

Query: 242 LMRKQ--FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            ++ +  F+++I +   ++     +IL  + F+ T+SQ   +++IL D        R+L 
Sbjct: 223 FLKSKTKFRQDIDLAYKLD-----EILSELSFTLTRSQRRVLEEILDDCKSPYTANRLLV 277

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA++ M      G Q+ +M P  +LA Q +E   +      +   ++TG+ 
Sbjct: 278 GDVGSGKTIVAIVIMIIFALNGYQSAMMVPTELLAIQQFEKNIELFDKFNVRAALLTGSS 337

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + K  E + +G+  I+IGTHA+  + + +  L  V+ DEQHRFGV QR  L  K  
Sbjct: 338 KDKDKLK--EDLKNGKIDILIGTHAIIVEDVDFNNLKFVVNDEQHRFGVSQRQMLALKGD 395

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A + L MTATPIPRTL L     ID+S I E P GRKPI T ++  ++I+ + E++   +
Sbjct: 396 AVNYLTMTATPIPRTLSLKISEIIDLSIINELPKGRKPIMTRLLGSDKIEILYEKINQTI 455

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            EG++ Y +   I+   +++  ++ + + +    +   IAI+HG+M   DKE ++  F  
Sbjct: 456 REGRQIYVVSNNIDSDDKNSLENLYKIYKNRFPRY--RIAILHGKMKAKDKEDILGDFNK 513

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+ATTVIEVGIDV +A+ +II NA +FGL+ LHQLRGRVGRGE  S C L+   P
Sbjct: 514 GKIDILLATTVIEVGIDVANANTMIIYNANNFGLSTLHQLRGRVGRGEYESYCYLISDNP 573

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
              N   +L+VL  + DGF IA++D +QR  G+IL   Q G
Sbjct: 574 SPSN---KLNVLVESNDGFEIAKKDYEQRGGGKILSYLQHG 611


>gi|306992257|gb|ADN19245.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 446

 Score =  279 bits (714), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 171/454 (37%), Positives = 271/454 (59%), Gaps = 14/454 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           M+ F NG   +L++TTVIEVG++V +A+++I+EN
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVEN 446


>gi|306992373|gb|ADN19303.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992377|gb|ADN19305.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 171/456 (37%), Positives = 272/456 (59%), Gaps = 14/456 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           M+ F N    +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 413 MEEFVNREIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992283|gb|ADN19258.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 171/457 (37%), Positives = 272/457 (59%), Gaps = 14/457 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + + ++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKRRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           M+ F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 450


>gi|306992389|gb|ADN19311.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 446

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 170/454 (37%), Positives = 271/454 (59%), Gaps = 14/454 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           M+ F NG   +L++TTVIEVG++V +A+++I+EN
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVEN 446


>gi|306992273|gb|ADN19253.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 446

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 170/454 (37%), Positives = 271/454 (59%), Gaps = 14/454 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           M+ F NG   +L++TTVIEVG++V +A+++I+EN
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATVMIVEN 446


>gi|329936750|ref|ZP_08286457.1| ATP-dependent DNA helicase RecG [Streptomyces griseoaurantiacus
           M045]
 gi|329303980|gb|EGG47863.1| ATP-dependent DNA helicase RecG [Streptomyces griseoaurantiacus
           M045]
          Length = 989

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 158/402 (39%), Positives = 239/402 (59%), Gaps = 31/402 (7%)

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQI-------IVEI 354
            T+VAL AM A V+ GGQA ++AP  +LAQQH+    E +    Q   +        V +
Sbjct: 566 NTMVALRAMLAVVDCGGQAAMLAPTEVLAQQHHRSVTEMMGDLAQGGMLGGAEHATKVVL 625

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+M  A RR+AL  +  G+A I+IGTHAL +D+++++ L LV+VDEQHRFGV+QR  L
Sbjct: 626 LTGSMGTAARRQALLDLVTGEAGIVIGTHALIEDAVRFHDLGLVVVDEQHRFGVEQRDAL 685

Query: 415 TQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----ID 469
             K    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI + ++P       + 
Sbjct: 686 RGKGEQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKPHFLA 745

Query: 470 EVIERLKVVLSEGKKAYWICPQI-EEKKESNFRSVVERFN-------SLHEHFTSS---- 517
              ER++  +  G +AY +CP+I +E  E   ++  E           + E   +     
Sbjct: 746 RAWERVREEVENGHQAYVVCPRIGDEADEVRKKAAAEGERRPPLAVLDVAEQLVAGPLRG 805

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HGRM   DK++VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++Q
Sbjct: 806 LRVEVLHGRMPPEDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQ 865

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG     C+L+   P +  +  RL  +  T DGF ++  DL+QR+EG++LG
Sbjct: 866 LHQLRGRVGRGAAPGLCLLVTEMPEASAARQRLGAVAATLDGFELSRIDLEQRREGDVLG 925

Query: 636 IKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSV 676
             QSG    L     + D  ++  AR++A  ++  DP L SV
Sbjct: 926 QAQSGARSSLRVLAVIEDEEIIAEARQEATELVAADPALESV 967



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 133/324 (41%), Gaps = 34/324 (10%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P+   PL  PL +   +G   +  +++ +           DLL ++P  + +R     ++
Sbjct: 5   PALDEPLKQPLRSV--LGPATAKVMAEHLGLHTVG-----DLLHHYPRRYEERGQLTHLA 57

Query: 63  EISEERIVTITGYISQ---HSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKN 115
           ++  +  VT+   ++    H+    +  R      ++ + DG+G + L+FF         
Sbjct: 58  DLPMDEHVTVVAQVADARLHTFASCRAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHK 117

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----------FPLIEAVYSLPTG 165
               G +   +GK+     R+ + HP Y     +              PL  A   + + 
Sbjct: 118 ELLPGTRAMFSGKVSVFNRRLQLAHPAYELLRGEGAEEAVDSWAGALIPLYPATAKMESW 177

Query: 166 LSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225
                 + ++  A   L  LPE     L   +   ++ EA   IH PR   D E    AR
Sbjct: 178 KLAKAVQTVLPSAQEALDPLPE----SLRAGRGLATLPEALVKIHRPRTRADVE---DAR 230

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIAQKILRNIPFSPTKSQESAIKD 283
            RL +DE    Q+AL   R    +   +P     EG +     R +PF+ T+ Q +  ++
Sbjct: 231 ARLKWDEAFVLQVALARRRHDDAQLRAVPRKPRAEGLLTAFDAR-LPFTLTEGQRTVSRE 289

Query: 284 ILQDMSQKNRMLRILQGDVGSGKT 307
           I  D++  + M R+LQG+VGSGK 
Sbjct: 290 IFDDLATAHPMHRLLQGEVGSGKA 313


>gi|306818557|ref|ZP_07452280.1| possible DNA helicase RecG [Mobiluncus mulieris ATCC 35239]
 gi|304648730|gb|EFM46032.1| possible DNA helicase RecG [Mobiluncus mulieris ATCC 35239]
          Length = 819

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 211/708 (29%), Positives = 315/708 (44%), Gaps = 140/708 (19%)

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI---------IMVHPHYIFHNSQ 149
           G +T+ FF +    L+       K T+     KL  R+          + HP Y      
Sbjct: 100 GRLTVRFFAKHPAALQFHASRLEKGTIGVFAGKLSGRVDGFGGSGEAFLAHPEYQVLQDY 159

Query: 150 DVNF---------PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200
           D            PL  A   LP+       + +I   L+ +  +PE I +DL  +   P
Sbjct: 160 DPEVARELSLRPQPLYHATAGLPSWK----IEGLITTILAGVEEIPEAIPEDLRARWGLP 215

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ--FKKEIGIPINVE 258
           + AEA   +H+P      E    A + L Y E L    AL   R+Q   +     P  V 
Sbjct: 216 TAAEALQWLHHPPDEASHEC---ALDYLRYREALTLGAALAKARQQARLRPAWASPAEVN 272

Query: 259 GK---------------------------------------------IAQKILRNIPFSP 273
           G                                              + ++ L  +PF  
Sbjct: 273 GNGVISADSSPGGGSAGASGGGSGVMRCHSETAATSDKVDISGGGKTLVERFLAQLPFEL 332

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  A ++I  DM+ +  M R+LQG+VGSGKT++A +A   AV+ G QA  MAP  +L
Sbjct: 333 TAGQLRAWQEISADMATEVPMNRLLQGEVGSGKTVIAALAAITAVQNGCQAAFMAPTEVL 392

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQ--------------AHRRKALER-IAHGQAHI 378
           A QH+E +KK   N       + G  P+              A  + AL+  +  G+  I
Sbjct: 393 AHQHFETLKKLLGNLGCSPSGLDGTKPEGDVVGLRLLVGSTPAKEKSALQTALQTGEPLI 452

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVL 437
           ++GTHAL   S+++ KL L +VDEQHRFGV+QR+ L      APH L MTATPIPRT+ +
Sbjct: 453 VVGTHALLSKSVKFSKLGLAVVDEQHRFGVEQRVALLAAGQRAPHFLAMTATPIPRTVAM 512

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQ--- 491
           T  GD+D+S + E P GR  +KT ++  + +  V    +    E   G + Y +C Q   
Sbjct: 513 TVFGDLDVSVLAEIPRGRGEVKTFLVSEDNVAWVARAWRRAAEEILDGGRVYVLCAQKAP 572

Query: 492 -------IEEKKES---------------------------------NFRSVVERFNSLH 511
                    EK ++                                 N      R  +L 
Sbjct: 573 HEPVPGDTAEKPDTAPLAKPTTTVPLEEEFGGASGNVPTLAPGRVLHNVEDTFRRLQALP 632

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               ++I  +H  +    K+  +  F +G   LL++TTVIEVG+DV +AS++II +A+ F
Sbjct: 633 FFADTTITWVHSGLDSGAKQRAIADFVSGVAPLLVSTTVIEVGMDVPEASMMIILDADRF 692

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLS---KNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           GL+QLHQLRGR+GRG     C+ +   PLS     +  RL    +T DGF +AE DL+ R
Sbjct: 693 GLSQLHQLRGRIGRGVRPGVCLAIA--PLSLADTPARERLEAFASTRDGFALAEADLRIR 750

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTS 675
            EG++LG  Q+G    L     + D+ ++E A++ A+ I+T+D  L +
Sbjct: 751 HEGDVLGDTQAGRNSRLQVLSLVQDAKIIEAAKQAAEEIVTEDAQLAN 798


>gi|306992383|gb|ADN19308.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992385|gb|ADN19309.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  277 bits (708), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 170/455 (37%), Positives = 271/455 (59%), Gaps = 14/455 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           M+ F N    +L++TTVIEVG++V +A+++I+ENA
Sbjct: 413 MEEFVNREIDILVSTTVIEVGVNVPNATVMIVENA 447


>gi|257791106|ref|YP_003181712.1| helicase domain-containing protein [Eggerthella lenta DSM 2243]
 gi|317488170|ref|ZP_07946742.1| ATP-dependent DNA helicase RecG [Eggerthella sp. 1_3_56FAA]
 gi|257475003|gb|ACV55323.1| helicase domain protein [Eggerthella lenta DSM 2243]
 gi|316912715|gb|EFV34252.1| ATP-dependent DNA helicase RecG [Eggerthella sp. 1_3_56FAA]
          Length = 734

 Score =  276 bits (707), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 216/680 (31%), Positives = 349/680 (51%), Gaps = 62/680 (9%)

Query: 43  DLLFYHPSSFIDRHYRPKISE--ISEERIVTITGYISQHSSFQLQKRRPYKIL----LND 96
           DL  + P  +ID   +  ++   I E+   T+ G + +    +L+K +P   L    L D
Sbjct: 43  DLATHFPRRYIDLSRKATVAAGVIGEQ--CTVEGAVHE---IKLKKPKPRLTLVELSLVD 97

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156
           GTG + ++  +R+  ++  V   G +I V GK++       M +P+    + +     +I
Sbjct: 98  GTG-VLMVTCFRQPWLMDQVK-PGMRIAVAGKLEFNYGFKRMTNPYLEVLDGEGAAEGMI 155

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
             V+     +S    ++++  AL  +  L + +  +L  K    S   A + IH P    
Sbjct: 156 IPVHPACEKISAAWMRRLVGNALEAVCGLHDPLPLELRAKYRLMSRGAALSCIHFPHA-- 213

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI-PI--NVEGKIAQKILRNIPFSP 273
             +  + AR RL Y+ELL   + L+LMR+  ++  G  P+   V+G     +   +PF  
Sbjct: 214 -MDEVAEARRRLVYEELL--LLELMLMRESRERTDGCEPVVHAVDGPRMAALAEAVPFRL 270

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  QE A +DIL  ++       +L GDVG+GKT+VA  A+AAA + G QA++MAP  +L
Sbjct: 271 TDEQEEAKRDILAALAAPQTANHLLLGDVGTGKTVVAAFALAAAADTGAQALLMAPTEVL 330

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH + +        I   ++TG+ P A R   L R+A G   ++IGTHAL +D +   
Sbjct: 331 ARQHGKSLGPLFDAAGISWAVLTGSTPSAEREAVLARVAEGSVDVLIGTHALLEDDVAPR 390

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +L LV++DEQ RFGV+QR KL  K  AP  L +TATPIPR+L L   G++ +S +  +P 
Sbjct: 391 RLSLVVIDEQQRFGVEQRAKLLAKGDAPDALYLTATPIPRSLALALFGNLTLSYLKHRPH 450

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI------EEKKESNFRSVVERF 507
                 T +          +  +  L+ G++ Y +CP I       + K ++  S   R 
Sbjct: 451 DAAQRATFVHQKADRGHAYDAARAALARGEQVYVVCPLIGQDSGERDAKAADGGSGGRRR 510

Query: 508 NSLHEHFTSS----------------------------------IAIIHGRMSDIDKESV 533
            +  E +  +                                  + ++HGRM   +K++V
Sbjct: 511 EADEEAYEYAAISIETDDDLEGDDVAAAAKEASYLQGTVFADYRVELLHGRMPASEKQAV 570

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F++   ++L+ATTVIEVG+DV +A+++I+E+A+ FGL+QLHQLRGRVGRGE+ +  +
Sbjct: 571 MQRFRDNETQVLVATTVIEVGVDVPNATVMIVEDADRFGLSQLHQLRGRVGRGEKAAE-V 629

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
            L     S  + TRLS + +T+DGF +A  DL  R+EG+ILG +Q G     +       
Sbjct: 630 HLVSASKSDAALTRLSAMVDTDDGFELASYDLSLRREGDILGNRQHGASGLKLVNVMRDG 689

Query: 654 SLLEIARKDAKHILTQDPDL 673
           +++E A  DA  IL +DP+L
Sbjct: 690 AVIEAAHADAAAILEEDPNL 709


>gi|269792872|ref|YP_003317776.1| helicase domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100507|gb|ACZ19494.1| helicase domain protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 626

 Score =  276 bits (706), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 196/635 (30%), Positives = 311/635 (48%), Gaps = 44/635 (6%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL + P  + D       +E    R   + G   + S    ++   Y +    G G   
Sbjct: 3   DLLLFLPRRYEDLRRPVTPAEALPGRRCLVEGSAGRPSPMMGRRGMRYPV---TGGGGTM 59

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159
            +F +    M+      G ++ + G ++       M +P  +     D + PL   I  V
Sbjct: 60  WVFVFGPRPMVPQ---PGERVLLYGPVRTSPLGPCMANPKLL-----DRSSPLLGRIVPV 111

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           Y     L     + +I+ AL R    P  + I +++  ++S P +  +   IH P     
Sbjct: 112 YPSSRALPSWWMRNLILSALERTSQDPPEDPIPEEIRFRRSLPDLVGSLREIHWPSSGAS 171

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA--QKILRNIPFSPTK 275
           +     AR RLAY ELL  Q    L R+   + +G       + A  ++   ++PF PT+
Sbjct: 172 WR---EARRRLAYQELLLLQACFALRRRM--RPLGAAPAAPAREADVEEYASSLPFRPTR 226

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           SQES ++ I Q  + + R   +LQGDVGSGKT VAL A    ++ G   + ++P  ILA+
Sbjct: 227 SQESCMRAIAQAFN-RGRFDLLLQGDVGSGKTAVALFAAHLYLKRGRSVLFLSPTEILAR 285

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           Q ++  ++   + +  VE++TG+             A     + +GT AL          
Sbjct: 286 QTFQVARRLLPDFK--VELVTGDT---------RADASPGPGLYVGTSALLFRKALGEAS 334

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L IVDEQ RFGV QR  LT+      +L+++ATPIPRT+ L   GD+++  + E P GR
Sbjct: 335 ALAIVDEQQRFGVSQRAALTRGGRM-SLLMVSATPIPRTMALALYGDLEVLTLGESPPGR 393

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             + T+ +    +  V++RL   L  G +A+W+CP +E    +   + V R   L E   
Sbjct: 394 GRVTTMSMGPRGLGRVLDRLVGELERGGRAFWVCPSLE----AGPSAAVSRHRQLCESLG 449

Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            ++  ++HGRM   +KE+ +  F+ G+ +LL+ TTV+EVGIDV DA+++++E A+  GL+
Sbjct: 450 WANPQLVHGRMPSEEKEAAVLRFREGSSRLLVGTTVLEVGIDVPDATVMVVEGADMLGLS 509

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG     C+LL      +    RL  L+   DGF +AE DL +R  G + 
Sbjct: 510 QLHQLRGRVGRGGSDGLCVLLSS---REPVPQRLKALEELSDGFKVAELDLAERGPGTLH 566

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            + Q G     +A       LLE AR+DA  ++ +
Sbjct: 567 HLSQHGDMGLKVADLSRDLELLEAAREDAASLVEE 601


>gi|227875295|ref|ZP_03993437.1| possible DNA helicase RecG [Mobiluncus mulieris ATCC 35243]
 gi|227844200|gb|EEJ54367.1| possible DNA helicase RecG [Mobiluncus mulieris ATCC 35243]
          Length = 819

 Score =  276 bits (706), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 214/725 (29%), Positives = 321/725 (44%), Gaps = 141/725 (19%)

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI---------IMVHPHYIFHNSQ 149
           G +T+ FF +    L+       K T+     KL  R+          + HP Y      
Sbjct: 100 GRLTVRFFAKHPAALQFHASRLEKGTIGVFAGKLSGRVDGFGGSGEAFLAHPEYQVLQDY 159

Query: 150 DVNF---------PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200
           D            PL  A   LP+       + +I   L+ +  +PE I +DL  +   P
Sbjct: 160 DPEVARELSLRPQPLYHATAGLPSWK----IEGLITTILAGVEEIPEAIPEDLRARWGLP 215

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ--FKKEIGIPINVE 258
           + AEA   +H+P      E    A + L Y E L    AL   R+Q   +     P  V 
Sbjct: 216 TAAEALQWLHHPPDEASHEC---ALDYLRYREALTLGAALAKARQQARLRPAWASPAEVN 272

Query: 259 GK---------------------------------------------IAQKILRNIPFSP 273
           G                                              + ++ L  +PF  
Sbjct: 273 GNGVISADSSPGGGSAGASGGGSGVMRCHSETAATSDKVDISGGGKTLVERFLAQLPFEL 332

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  A ++I  DM+ +  M R+LQG+VGSGKT++A +A   AV+ G QA  MAP  +L
Sbjct: 333 TAGQLRAWQEISADMATEVPMNRLLQGEVGSGKTVIAALAAITAVQNGCQAAFMAPTEVL 392

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQ--------------AHRRKALER-IAHGQAHI 378
           A QH+E +KK   N       + G  P+              A  + AL+  +  G+  I
Sbjct: 393 AHQHFETLKKLLGNLGCSPSGLDGTKPEGDVVGLRLLVGSTPAKEKSALQTALQTGEPLI 452

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVL 437
           ++GTHAL   S+++ KL L +VDEQHRFGV+QR+ L      APH L MTATPIPRT+ +
Sbjct: 453 VVGTHALLSKSVKFSKLGLAVVDEQHRFGVEQRVALLAAGQRAPHFLAMTATPIPRTVAM 512

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQ--- 491
           T  GD+D+S + E P GR  +KT ++  + +  V    +    E   G + Y +C Q   
Sbjct: 513 TVFGDLDVSVLAEIPRGRGEVKTFLVSEDNVAWVARAWRRAAEEILDGGRVYVLCAQKAP 572

Query: 492 -------IEEKKES---------------------------------NFRSVVERFNSLH 511
                    EK ++                                 N      R  +L 
Sbjct: 573 HEPVPGDTAEKPDTAPLAKPTTTVPLEEEFGGASGNVPTLAPGRVLHNVEDTFRRLQALP 632

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               ++I  +H  +    K+  +  F +G   LL++TTVIEVG+DV +AS++II +A+ F
Sbjct: 633 FFADTTITWVHSGLDSGAKQRAIADFVSGVAPLLVSTTVIEVGMDVPEASMMIILDADRF 692

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLS---KNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           GL+QLHQLRGR+GRG     C+ +   PLS     +  RL    +T DGF +AE DL+ R
Sbjct: 693 GLSQLHQLRGRIGRGVRPGVCLAIA--PLSLADTPARERLEAFASTRDGFALAEADLRIR 750

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            EG++LG  Q+G    L     + D+ ++E A++ A+ I+ +D  L +   +  R++  L
Sbjct: 751 HEGDVLGDTQAGRNSRLQVLSLVQDAKIIEAAKQAAEEIVAEDAQLAN-HPELARLVFGL 809

Query: 688 YQYNE 692
            Q  E
Sbjct: 810 GQGGE 814


>gi|269978182|ref|ZP_06185132.1| ATP-dependent DNA helicase RecG [Mobiluncus mulieris 28-1]
 gi|269933691|gb|EEZ90275.1| ATP-dependent DNA helicase RecG [Mobiluncus mulieris 28-1]
          Length = 836

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 214/725 (29%), Positives = 321/725 (44%), Gaps = 141/725 (19%)

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI---------IMVHPHYIFHNSQ 149
           G +T+ FF +    L+       K T+     KL  R+          + HP Y      
Sbjct: 117 GRLTVRFFAKHPAALQFHASRLEKGTIGVFAGKLSGRVDGFGGSGEAFLAHPEYQVLQDY 176

Query: 150 DVNF---------PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200
           D            PL  A   LP+       + +I   L+ +  +PE I +DL  +   P
Sbjct: 177 DPEVARELSLRPQPLYHATAGLPSWK----IEGLITTILAGVEEIPEAIPEDLRARWGLP 232

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ--FKKEIGIPINVE 258
           + AEA   +H+P      E    A + L Y E L    AL   R+Q   +     P  V 
Sbjct: 233 TAAEALQWLHHPPDEASHEC---ALDYLRYREALTLGAALAKARQQARLRPAWASPAEVN 289

Query: 259 GK---------------------------------------------IAQKILRNIPFSP 273
           G                                              + ++ L  +PF  
Sbjct: 290 GNGVISADSSPGGGSAGASGGGSGVMRCHSETAATSDKVDISGGGKTLVERFLAQLPFEL 349

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  A ++I  DM+ +  M R+LQG+VGSGKT++A +A   AV+ G QA  MAP  +L
Sbjct: 350 TAGQLRAWQEISADMATEVPMNRLLQGEVGSGKTVIAALAAITAVQNGCQAAFMAPTEVL 409

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQ--------------AHRRKALER-IAHGQAHI 378
           A QH+E +KK   N       + G  P+              A  + AL+  +  G+  I
Sbjct: 410 AHQHFETLKKLLGNLGCSPSGLDGTKPEGDVVGLRLLVGSTPAKEKSALQTALQTGEPLI 469

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVL 437
           ++GTHAL   S+++ KL L +VDEQHRFGV+QR+ L      APH L MTATPIPRT+ +
Sbjct: 470 VVGTHALLSKSVKFSKLGLAVVDEQHRFGVEQRVALLAAGQRAPHFLAMTATPIPRTVAM 529

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQ--- 491
           T  GD+D+S + E P GR  +KT ++  + +  V    +    E   G + Y +C Q   
Sbjct: 530 TVFGDLDVSVLAEIPRGRGEVKTFLVSEDNVAWVARAWRRAAEEILDGGRVYVLCAQKAP 589

Query: 492 -------IEEKKES---------------------------------NFRSVVERFNSLH 511
                    EK ++                                 N      R  +L 
Sbjct: 590 HEPVPGDTAEKPDTAPLAKPTTTVPLEEEFGGASGNVPTLAPGRVLHNVEDTFRRLQALP 649

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               ++I  +H  +    K+  +  F +G   LL++TTVIEVG+DV +AS++II +A+ F
Sbjct: 650 FFADTTITWVHSGLDSGAKQRAIADFVSGVAPLLVSTTVIEVGMDVPEASMMIILDADRF 709

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLS---KNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           GL+QLHQLRGR+GRG     C+ +   PLS     +  RL    +T DGF +AE DL+ R
Sbjct: 710 GLSQLHQLRGRIGRGVRPGVCLAIA--PLSLADTPARERLEAFASTRDGFALAEADLRIR 767

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            EG++LG  Q+G    L     + D+ ++E A++ A+ I+ +D  L +   +  R++  L
Sbjct: 768 HEGDVLGDTQAGRNSRLQVLSLVQDAKIIEAAKQAAEEIVAEDAQLAN-HPELARLVFGL 826

Query: 688 YQYNE 692
            Q  E
Sbjct: 827 GQGGE 831


>gi|307701074|ref|ZP_07638099.1| putative ATP-dependent DNA helicase RecG [Mobiluncus mulieris
           FB024-16]
 gi|307614069|gb|EFN93313.1| putative ATP-dependent DNA helicase RecG [Mobiluncus mulieris
           FB024-16]
          Length = 836

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 210/708 (29%), Positives = 314/708 (44%), Gaps = 140/708 (19%)

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI---------IMVHPHYIFHNSQ 149
           G +T+ FF +    L+       K T+     KL  R+          + HP Y      
Sbjct: 117 GRLTVRFFAKHPAALQFHASRLEKGTIGVFAGKLSGRVDGFGGSGEAFLAHPEYQVLQDY 176

Query: 150 DVNF---------PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200
           D            PL  A   LP+       + +I   L+ +  +PE I +DL  +   P
Sbjct: 177 DPEVARELSLRPQPLYHATAGLPSWK----IEGLITTILAGVEEIPEAIPEDLRARWGLP 232

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ--FKKEIGIPINVE 258
           + AEA   +H+P      E    A + L Y E L    AL   R+Q   +     P  V 
Sbjct: 233 TAAEALQWLHHPPDEASHEC---ALDYLRYREALTLGAALAKARQQARLRPAWASPAEVN 289

Query: 259 GK---------------------------------------------IAQKILRNIPFSP 273
           G                                              + ++ L  +PF  
Sbjct: 290 GNGVISADSSPGGGSAGASGGGSGVMRCHSETAATSDKVDISGGGKTLVERFLAQLPFEL 349

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  A ++I  DM+ +  M R+LQG+VGSGKT++A +A   AV+ G QA  MAP  +L
Sbjct: 350 TAGQLRAWQEISADMATEVPMNRLLQGEVGSGKTVIAALAAITAVQNGCQAAFMAPTEVL 409

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQ--------------AHRRKALER-IAHGQAHI 378
           A QH+E +KK   N       + G  P+              A  + AL+  +  G+  I
Sbjct: 410 AHQHFETLKKLLGNLGCSPSGLDGTKPEGDVVGLRLLVGSTPAKEKSALQTALQTGEPLI 469

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVL 437
           ++GTHAL   S+++ KL L +VDEQHRFGV+QR+ L      APH L MTATPIPRT+ +
Sbjct: 470 VVGTHALLSKSVKFSKLGLAVVDEQHRFGVEQRVALLAAGQRAPHFLAMTATPIPRTVAM 529

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQ--- 491
           T  GD+D+S + E P GR  +KT ++  + +  V    +    E   G + Y +C Q   
Sbjct: 530 TVFGDLDVSVLAEIPRGRGEVKTFLVSEDNVAWVARAWRRAAEEILDGGRVYVLCAQKAP 589

Query: 492 -------IEEKKES---------------------------------NFRSVVERFNSLH 511
                    EK ++                                 N      R  +L 
Sbjct: 590 HEPVPGDTAEKPDTAPLAKPTTTVSLEEEFGGASGNVPTLAPGRVLHNVEDTFRRLQALP 649

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               ++I  +H  +    K+  +  F +G   LL++TTVIEVG+DV +AS++II +A+ F
Sbjct: 650 FFADTTITWVHSGLDSGAKQRAIADFVSGVAPLLVSTTVIEVGMDVPEASMMIILDADRF 709

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLS---KNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           GL+QLHQLRGR+GRG     C+ +   PLS     +  RL    +T DGF +AE DL+ R
Sbjct: 710 GLSQLHQLRGRIGRGVRPGVCLAIA--PLSLADTPARERLEAFASTRDGFALAEADLRIR 767

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTS 675
            EG++LG  Q+G    L     + D+ ++E A++ A+ I+ +D  L +
Sbjct: 768 HEGDVLGDTQAGRNSRLQVLSLVQDAKIIEAAKQAAEEIVAEDAQLAN 815


>gi|227499432|ref|ZP_03929543.1| RecG family helicase [Anaerococcus tetradius ATCC 35098]
 gi|227218494|gb|EEI83737.1| RecG family helicase [Anaerococcus tetradius ATCC 35098]
          Length = 663

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 210/659 (31%), Positives = 334/659 (50%), Gaps = 35/659 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L++ +G+G K +  L ++   G +      DL  Y+P  + DR     I +I +      
Sbjct: 3   LTSLKGIGPKKASDLKRLGILGVS------DLYSYYPKEYEDRTRLRSIIDIKDSNKHYF 56

Query: 73  TGYISQHSSFQLQKRRPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              I     F+   +     L    L + + +I L++F  +    K   FEG++     +
Sbjct: 57  CWQIVSKLYFKNLSKMTISYLYARELTNPSYKIRLIWFNDRFSPRK--LFEGKEYKFFCQ 114

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           I + K     V+P  IF +  +     I  +YSL  GLS       + EAL       + 
Sbjct: 115 ITEKKGIYEAVNP--IFCDLDEDEIGSIIPLYSLTKGLSHKQISTYVEEALKYYDSKEDI 172

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ-- 246
           I+  LL K       +    IH P   ++      A+ ++   +LL     L  ++++  
Sbjct: 173 IDYSLLDKFKLNKRIDNLREIHRPSSIENLR---KAKSQIKIIDLLKDLYFLDYLKEKTR 229

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            K+ I +  N+      +IL+ IPF+ T+SQE ++ +IL+D++  N   R+L GDVGSGK
Sbjct: 230 HKQSINLYYNL-----SEILKEIPFTLTRSQEKSLIEILEDVASPNSANRLLVGDVGSGK 284

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA+I M        Q+ +M P  +LA Q +E  K      +I   ++T +     + K
Sbjct: 285 TIVAIITMIVFALNSYQSAMMVPTELLAIQQFEKNKYLFDKFKIKAALLTSSTKNKQKLK 344

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E I  G+  ++IGTHAL Q+ + +  L  V+ DEQHRFGV QR  L  K    + L M
Sbjct: 345 --EDIRDGKIDLLIGTHALIQEDVVFKNLRFVVNDEQHRFGVSQRQMLALKGHEVNYLTM 402

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRT+ L     ID+S I E P GR PI T II   +I  +   ++  +   ++ Y
Sbjct: 403 TATPIPRTMSLKISQIIDLSIINELPKGRIPITTKIIGSEKISLLYNFIEENIRASRQVY 462

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +   I+   +++  ++ + +      +   IAI+HG+++  DKE ++  F  G+  +L+
Sbjct: 463 VVTNNIDADDKNSLENLYKLYKKKFPSY--RIAILHGKLTANDKEDILKEFSEGSIDILL 520

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVGIDV +A+ +II NA++FGL+ LHQLRGRVGRGE  S C L+   P   +  +
Sbjct: 521 ATTVIEVGIDVANANTMIIYNADNFGLSTLHQLRGRVGRGEYKSYCFLVSDKP---SPTS 577

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP----KFLIAQPELHDSLLEIARK 661
           +L++L  + DGF IA++D + R  G+IL + Q G      ++L    E  D   EI +K
Sbjct: 578 KLNILVKSNDGFEIAKKDFELRGGGKILSLIQHGKNLSKIEYLNMTAEEIDKSFEIYKK 636


>gi|325830867|ref|ZP_08164251.1| putative ATP-dependent DNA helicase RecG [Eggerthella sp. HGA1]
 gi|325487274|gb|EGC89717.1| putative ATP-dependent DNA helicase RecG [Eggerthella sp. HGA1]
          Length = 734

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 215/680 (31%), Positives = 349/680 (51%), Gaps = 62/680 (9%)

Query: 43  DLLFYHPSSFIDRHYRPKISE--ISEERIVTITGYISQHSSFQLQKRRPYKIL----LND 96
           DL  + P  +ID   +  ++   I E+   T+ G + +    +L+K +P   L    L D
Sbjct: 43  DLATHFPRRYIDLSRKATVAAGVIGEQ--CTVEGAVHE---IKLKKPKPRLTLVELSLVD 97

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156
           GTG + ++  +R+  ++  V   G +I V GK++       M +P+    + +     +I
Sbjct: 98  GTG-VLMVTCFRQPWLMDQVK-PGMRIAVAGKLEFNYGFKRMTNPYLEVLDGEGAAEGMI 155

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
             V+     +S    ++++  AL  +  L + +  +L  K    S   A + IH P    
Sbjct: 156 IPVHPACEKISAAWMRRLVGNALEAVRGLHDPLPLELRAKYRLMSRGAALSCIHFPHA-- 213

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI-PI--NVEGKIAQKILRNIPFSP 273
             +  + AR RL Y+ELL   + L+LMR+  ++  G  P+   V+G     +   +PF  
Sbjct: 214 -MDEVAEARRRLVYEELL--LLELMLMRESRERTDGCEPVVHAVDGPRMTALAEAVPFRL 270

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  QE A +DIL  ++       +L GDVG+GKT+VA  A+AAA + G QA++MAP  +L
Sbjct: 271 TDEQEEAKRDILAALAAPQTANHLLLGDVGTGKTVVAAFALAAAADTGAQALLMAPTEVL 330

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH + +        I   ++TG+ P A R   L R+A G   +++GTHAL +D +   
Sbjct: 331 ARQHGKSLGPLFDAAGISWAVLTGSTPSAEREAVLARVAEGSVDVLVGTHALLEDDVAPR 390

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +L LV++DEQ RFGV+QR KL  K  AP  L +TATPIPR+L L   G++ +S +  +P 
Sbjct: 391 RLSLVVIDEQQRFGVEQRAKLLAKGDAPDALYLTATPIPRSLALALFGNLTLSYLKHRPH 450

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI------EEKKESNFRSVVERF 507
                 T +          +  +  L+ G++ Y +CP I       + K ++  S   R 
Sbjct: 451 DAAQRTTFVHQKADRGHAYDAARAALARGEQVYVVCPLIGQDSGERDAKAADGGSGGRRR 510

Query: 508 NSLHEHFTSS----------------------------------IAIIHGRMSDIDKESV 533
            +  E +  +                                  + ++HGRM   +K++V
Sbjct: 511 EADEEAYEYAAISIETDDDLEGDDVAAAAKEASYLQGTVFADYRVELLHGRMPASEKQAV 570

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F++   ++L+ATTVIEVG+DV +A+++I+E+A+ FGL+QLHQLRGRVGRGE+ +  +
Sbjct: 571 MQRFRDNETQVLVATTVIEVGVDVPNATVMIVEDADRFGLSQLHQLRGRVGRGEKAAE-V 629

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
            L     S  + TRLS + +T+DGF +A  DL  R+EG+ILG +Q G     +       
Sbjct: 630 HLVSASKSDAALTRLSAMVDTDDGFELASYDLSLRREGDILGNRQHGASGLKLVNVMRDG 689

Query: 654 SLLEIARKDAKHILTQDPDL 673
           +++E A  DA  IL +DP+L
Sbjct: 690 AVIEAAHADAAAILEEDPNL 709


>gi|306992403|gb|ADN19318.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 430

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 166/431 (38%), Positives = 258/431 (59%), Gaps = 12/431 (2%)

Query: 144 IFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFP 200
           +   S+D  +N   I  +Y L  GL+ +  KKI+  AL   +  + E+ +++ L +K   
Sbjct: 6   VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIKKIMFNALKDYVQEIEEFFDEEFLFEKGLM 65

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEG 259
            I  A   I+ P+     E    A+ R  Y EL   Q+AL LM++  K + GI    VE 
Sbjct: 66  DIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFLMKRSVKGKKGIKFERVEL 122

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           K     L  +PF  T +Q   +K+I+ DM+    M R++QGDVGSGKT+VA  +M  A++
Sbjct: 123 K---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGDVGSGKTVVAACSMYIAIK 179

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  +++++ LE+I +G   I+
Sbjct: 180 NGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKKEVLEKIKNGDYDIV 239

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHAL +D + +  L L I DEQHRFGV+QR  LT+K   P VL+MTATPIPRTL L  
Sbjct: 240 VGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENPDVLVMTATPIPRTLALIL 299

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
            GD+DIS I + P GRK +KT +I  +   +  E     + +G++ Y +CP IEE  + N
Sbjct: 300 YGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQVYVVCPLIEESDKIN 359

Query: 500 FRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             S    +  +++     + + ++HG+M+D DKE VM+ F N    +L++TTVIEVG++V
Sbjct: 360 AMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVNREIDILVSTTVIEVGVNV 419

Query: 558 VDASIIIIENA 568
            +A+++I+ENA
Sbjct: 420 PNATVMIVENA 430


>gi|306992375|gb|ADN19304.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 446

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 169/450 (37%), Positives = 269/450 (59%), Gaps = 14/450 (3%)

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181
           + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   
Sbjct: 5   INGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALKDY 62

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   Q+AL 
Sbjct: 63  VQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALF 119

Query: 242 LMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M R++QG
Sbjct: 120 LVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQG 176

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++ 
Sbjct: 177 DVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSIS 236

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K   
Sbjct: 237 PSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGEN 296

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + 
Sbjct: 297 PDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVK 356

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFK 538
           +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F 
Sbjct: 357 KGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFV 416

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           N    +L++TTVIEVG++V +A+++I+ENA
Sbjct: 417 NREIDILVSTTVIEVGVNVPNATVMIVENA 446


>gi|306992431|gb|ADN19332.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992433|gb|ADN19333.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992435|gb|ADN19334.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992437|gb|ADN19335.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 441

 Score =  273 bits (699), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 168/449 (37%), Positives = 266/449 (59%), Gaps = 14/449 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           M+ F NG   +L++TTVIEVG++V +A++
Sbjct: 413 MEEFVNGKIDILVSTTVIEVGVNVPNATV 441


>gi|325479296|gb|EGC82392.1| putative ATP-dependent DNA helicase RecG [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 660

 Score =  273 bits (698), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 212/646 (32%), Positives = 323/646 (50%), Gaps = 58/646 (8%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER---- 68
           ++T +G+G K S  L K+            DL  Y+P S+ DR    K++ +++ R    
Sbjct: 3   VTTLKGIGPKKSKDLKKL------GIVEVSDLYNYYPKSYEDRSKLKKLANVTDNRKCYF 56

Query: 69  ---IVT--ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
              IV+   T YI+  S   +  R        + T +I L++F        N  F  RK+
Sbjct: 57  EWKIVSRLFTKYINGKSVSYIYAR--------EDTNKIRLIWF--------NDRFSPRKL 100

Query: 124 TVTGKIKKLKNRIIMVHPHY-----IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            V GKI K    I      Y     IF + +D     I ++YSL  GLS       I E+
Sbjct: 101 -VKGKIYKFYTSIRKKSETYEAINPIFCDLEDDEIGSIVSMYSLTKGLSNKQLSGFIAES 159

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L       + ++  LL++ S     +    +H+P      +  S A+ ++   +LL    
Sbjct: 160 LKYYDGKEDILDDYLLEEFSLNDRLDNLKEVHSPTS---IDSLSNAKSQIKIIDLLKDLY 216

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
               +++  K    + +  +      IL  + F  T+SQ S++K+IL+D        R+L
Sbjct: 217 ICEFLKQMTKSSQDLKLEYD---LNDILSYLSFDLTRSQVSSLKEILKDCESNYTSNRLL 273

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GDVGSGKT+VALI M      G Q+ +M P  +LA Q YE          I  EI+T +
Sbjct: 274 VGDVGSGKTIVALIVMLIFAMNGYQSAMMVPTELLAIQQYEKSIDLFNKLGISAEILTSS 333

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
               +  K  +++A G   I++GTHAL Q+ + +  L  V+ DEQHRFGV QR  L  K 
Sbjct: 334 SKDKNMIK--DKLAKGDIDILMGTHALIQEDVIFKNLKFVVNDEQHRFGVSQRQLLALKG 391

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
              + L MTATPIPRTL L     ID+S I E P GRK I T ++  ++ D + E +   
Sbjct: 392 ERVNYLTMTATPIPRTLSLRISDIIDLSIIDELPKGRKSIDTYLLGSDKEDLLYETIANN 451

Query: 479 LSEGKKAYWICPQIEEKK----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           + +G++ Y +   I+       E+ ++   +RF S        + ++HG++    KES++
Sbjct: 452 IDDGRQVYVVTNNIDSDDRYSLENLYKVYKKRFKSYR------VEMLHGKLKPDIKESIL 505

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+ATTVIEVGIDV +A+ ++I N+ +FGL+ LHQLRGRVGRGE  S C L
Sbjct: 506 KKFQDGEIDILLATTVIEVGIDVSNANTMVIYNSNNFGLSTLHQLRGRVGRGEYKSFCYL 565

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           +   P   N   +L++L  + DGF IA++D   R  G+IL   Q G
Sbjct: 566 ITDNPSPSN---KLNILVKSNDGFEIAKKDYDLRGGGKILSYLQHG 608


>gi|306992319|gb|ADN19276.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 442

 Score =  273 bits (698), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 167/449 (37%), Positives = 266/449 (59%), Gaps = 14/449 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           M+ F NG   +L++TTVIEVG++V +A++
Sbjct: 414 MEEFVNGKIDILVSTTVIEVGVNVPNATV 442


>gi|51849608|dbj|BAD42331.1| DNA helicase RecG [Nannochloris bacillaris]
          Length = 1341

 Score =  273 bits (698), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 187/545 (34%), Positives = 280/545 (51%), Gaps = 83/545 (15%)

Query: 196  KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255
            K  F    EA   +H P   + +E     R RLA+ ELL  Q+ LLL R   +    +P 
Sbjct: 772  KYGFMGYLEALRGMHRPTGPEHYE---ACRRRLAFQELLVLQLKLLLQRATLR----LPS 824

Query: 256  NVEG-------KIAQKIL--RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            N  G         AQ  L  R +PF  T +Q+ A+  +   M+    M+ +LQGDVG GK
Sbjct: 825  NKNGIQGVAVTNFAQMDLVRRALPFELTGAQDRALSAVTDGMTGWPPMMALLQGDVGCGK 884

Query: 307  TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII--------------- 351
            T VA +++ AA  +G QA +MAP  ILA+QH+  +K+  +  + +               
Sbjct: 885  TAVAFLSVLAATGSGYQAAVMAPTEILAEQHFSVLKRLIEEAKAVAEADPDDRDAAAAAA 944

Query: 352  ----VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
                V ++TG+  +A R +    +  G   +I+GTHAL  D++ +  L L I+DEQH+FG
Sbjct: 945  SLPEVVLLTGSTKRAERNRIQAGLEDGSIGVIVGTHALISDNVAFSNLGLAIIDEQHKFG 1004

Query: 408  VQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII--- 463
            V QR  L  KA+ +PH+L M+ATPIPR+L L + G++ +  I E P GR P+ T ++   
Sbjct: 1005 VGQRAALLAKASPSPHILSMSATPIPRSLALVAHGELSLVTIDELPPGRIPVATQVVIDH 1064

Query: 464  -PINRIDEVIERLKVVLSEGKKAYWICP----------------------------QIEE 494
             P  R  +V E ++  ++ G + Y +CP                            Q ++
Sbjct: 1065 DPTERA-QVYEAMRREVAAGGQVYIVCPLVDGKNAAGNSISGSSSMSSVDEDTQEHQYQQ 1123

Query: 495  KKESNFRSVVERFNSLHEHF---------TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            ++E    S      ++HE            S   ++HGRMS  +KE+ + +F  G   +L
Sbjct: 1124 QREGTTGSTSGLKAAVHERDRLIAEGEIEASQCGVLHGRMSSEEKEAALAAFAAGKTPVL 1183

Query: 546  IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
            I+TTV+EVG+DV  AS+II+E+A+ FGLAQLHQLRGRVGRG+  S+C L+     +    
Sbjct: 1184 ISTTVVEVGVDVPAASLIIVEHADRFGLAQLHQLRGRVGRGDRASACYLITDK--AGEEA 1241

Query: 606  TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG---MPKFLIAQPELHDSLLEIARKD 662
             RL VL+    GF +AE D   R  GE++G +QSG   M    + Q      L+E AR+ 
Sbjct: 1242 ERLRVLERCSSGFDVAEADFAIRGAGEVIGRRQSGKEAMGGLKVCQLPQDGMLVEAAREA 1301

Query: 663  AKHIL 667
            A  ++
Sbjct: 1302 AAGLM 1306


>gi|306992387|gb|ADN19310.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  273 bits (698), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 169/455 (37%), Positives = 270/455 (59%), Gaps = 14/455 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +    I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNVDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           M+ F N    +L++TTVIEVG++V +A+++I+ENA
Sbjct: 413 MEEFVNREIDILVSTTVIEVGVNVPNATVMIVENA 447


>gi|306992411|gb|ADN19322.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 441

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 167/449 (37%), Positives = 265/449 (59%), Gaps = 14/449 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  KKI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIKKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALKDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL LM++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLMKRSVKGKKGIKFERVELK---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           M+ F N    +L++TTVIEVG++V +A++
Sbjct: 413 MEEFVNREIDILVSTTVIEVGVNVPNATV 441


>gi|306992381|gb|ADN19307.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 444

 Score =  270 bits (689), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 167/451 (37%), Positives = 267/451 (59%), Gaps = 14/451 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 2   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 59

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 60  ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 116

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 117 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 173

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 174 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 233

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 234 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 293

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 294 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 353

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 354 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 413

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           M+ F N    +L++TTVIEVG++V +A+++I
Sbjct: 414 MEEFVNREIDILVSTTVIEVGVNVPNATVMI 444


>gi|146317997|ref|YP_001197709.1| RecG-like helicase [Streptococcus suis 05ZYH33]
 gi|145688803|gb|ABP89309.1| RecG-like helicase [Streptococcus suis 05ZYH33]
          Length = 542

 Score =  270 bits (689), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 179/532 (33%), Positives = 286/532 (53%), Gaps = 24/532 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           LS   G+G K +    KI +  N N     DLL Y+P  + D   +  I ++ +     +
Sbjct: 8   LSVLPGIGPKSAEKFLKI-SIQNIN-----DLLTYYPFRYEDFESK-SIYDLQDGEKAVV 60

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +   ++ Q    +  ++  +   GE+ L   +     L +    G+ I V GK  K 
Sbjct: 61  VGEVVSPANVQYYGYKRNRLRFSMKQGEVVLAVSFFNQPYLADKIVLGQDIAVWGKWDKA 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLPEWIE 190
           K  +  +    I     D     ++ VY +  G+S     K I  A+ +  L +L E + 
Sbjct: 121 KASLTGMK---ILAQVSDE----LQPVYHVAQGISQVNLVKAIKTAIDQGYLHLLEENLP 173

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             L ++    +  EA   +H P   +++     A  R+ ++EL   Q+ L +++   +  
Sbjct: 174 SVLRERYRLMNRREAVFAMHFPTNLEEYR---QALRRMKFEELFYFQLQLQMLKANNRDI 230

Query: 251 I-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           + G+ I  +       +R +PF  T +Q  A+ +IL DM     M R+LQGDVGSGKT+V
Sbjct: 231 LNGLKIAYDADRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMNRLLQGDVGSGKTVV 290

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A +AM AAV AG QA IM P  ILA+QH+E +++     ++ + ++TG M  A RR ALE
Sbjct: 291 AGLAMFAAVTAGMQAAIMVPTEILAEQHFESLRQLF--PELSIALLTGGMKAAERRTALE 348

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            I+ GQ  II+GTHAL Q+S+ Y+KL LV+ DEQHRFGV+QR    +K   P VL+MTAT
Sbjct: 349 AISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREKGDNPDVLMMTAT 408

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL +T+ GD+D+S I + PAGRKPI T  +   ++  V++ L+  L  G + Y+I 
Sbjct: 409 PIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWLERELEVGAQVYFIS 468

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKN 539
           P IEE +  + ++ V+  + L  HF   + +  +HG+M + +K+++M + ++
Sbjct: 469 PLIEESEALDLKNAVDLQSDLQAHFGEQVTVDLLHGKMKNDEKDAIMQALRS 520


>gi|306992477|gb|ADN19355.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 422

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 162/425 (38%), Positives = 253/425 (59%), Gaps = 12/425 (2%)

Query: 144 IFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFP 200
           +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   +  + E+ +++ L +K   
Sbjct: 4   VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEVEEFFDEEFLFEKGLM 63

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEG 259
            I  A   I+ P+     E    A+ R  Y EL   Q+AL LM++  K + GI    VE 
Sbjct: 64  DIKNALININFPQNEAYLEQ---AKYRFKYQELFLLQMALFLMKRSVKGKKGIKFERVEL 120

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           K     L  +PF  T +Q   +K+I+ DM+    M R++QGDVGSGKT+VA  +M  A++
Sbjct: 121 K---PFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGDVGSGKTVVAACSMYIAIK 177

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  +++++ LE+I +G   I+
Sbjct: 178 NGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKKEVLEKIKNGDYDIV 237

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHAL +D + +  L L I DEQHRFGV+QR  LT+K   P VL+MTATPIPRTL L  
Sbjct: 238 VGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENPDVLVMTATPIPRTLALIL 297

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
            GD+DIS I + P GRK +KT +I  +   +  E     + +G++ Y +CP IEE  + N
Sbjct: 298 YGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQVYVVCPLIEESDKIN 357

Query: 500 FRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             S    +  +++     + + ++HG+M+D DKE VM+ F NG   +L++TTVIEVG++V
Sbjct: 358 AMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVNGKIDILVSTTVIEVGVNV 417

Query: 558 VDASI 562
            +A++
Sbjct: 418 PNATV 422


>gi|29829213|ref|NP_823847.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
 gi|29606319|dbj|BAC70382.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
            MA-4680]
          Length = 1075

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 230/371 (61%), Gaps = 38/371 (10%)

Query: 307  TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT-------------QNTQIIVE 353
            T+VAL AM A V++GGQA ++AP  +LAQQH+  I +                +T+++  
Sbjct: 649  TMVALRAMLAVVDSGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGAEHSTKVV-- 706

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            ++TG+M  A RR+AL  +  G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR  
Sbjct: 707  LLTGSMGAAARRQALLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDA 766

Query: 414  LTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----I 468
            L  K    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI + ++P       +
Sbjct: 767  LRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKPHFL 826

Query: 469  DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS----------------VVERFNSLHE 512
                ER++  + +G +AY +C +I ++++   ++                V+E  + L +
Sbjct: 827  ARAWERVREEVGKGHQAYVVCARIGDEEDDPKKAKKKSPEDEAEKRPPLAVLEVADQLAK 886

Query: 513  HFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + +  +HGRM   DK++VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ 
Sbjct: 887  GPLQGLGVEVLHGRMPPDDKDAVMRRFAAGERDVLVATTVIEVGVNVPNATAMVIMDADR 946

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
            FG++QLHQLRGRVGRG     C+L+   P +  +  RL+ + +T DGF ++  DL+QR+E
Sbjct: 947  FGVSQLHQLRGRVGRGSAAGLCLLVTEMPEASPARQRLNAVASTLDGFELSRIDLEQRRE 1006

Query: 631  GEILGIKQSGM 641
            G++LG  QSG+
Sbjct: 1007 GDVLGQAQSGV 1017



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 116/291 (39%), Gaps = 39/291 (13%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ---HSSFQLQKRRP----YKILLN 95
           DLL ++P  + +R     ++++  +  VT+   ++    H+    +  R      ++ + 
Sbjct: 34  DLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASAKAPRGKGQRLEVTIT 93

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--- 152
           DG+G + L+FF             G +   +GK+     R+ + HP Y      D     
Sbjct: 94  DGSGRLQLVFFGNGVHKPHKDLLPGTRAMFSGKVSVFNRRLQLAHPAYELLRGADDEAAE 153

Query: 153 ------------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200
                       +P    + S     SV      + EAL  LP         L   +   
Sbjct: 154 SVDSWAGALIPIYPATAKLESWKIAKSVQTVLPSVQEALDPLP-------DSLRDGRGLI 206

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260
           S+ EA   IH P    D E    AR RL +DE    Q+AL   R     +  +P      
Sbjct: 207 SLPEALLKIHRPHTKADIE---DARARLKWDEAFVLQVALARRRH---ADAQLPAAARKP 260

Query: 261 IAQKILR----NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
               +L      +PF+ T+ Q+   K+I  D++ ++ M R+LQG+VGSGK 
Sbjct: 261 KPDGLLTAFDAKLPFTLTEGQQKVSKEIFDDLATEHPMHRLLQGEVGSGKA 311


>gi|322516063|ref|ZP_08069000.1| DNA helicase RecG [Streptococcus vestibularis ATCC 49124]
 gi|322125478|gb|EFX96824.1| DNA helicase RecG [Streptococcus vestibularis ATCC 49124]
          Length = 316

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 132/297 (44%), Positives = 205/297 (69%), Gaps = 4/297 (1%)

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           +I+GTH+L QD++ Y++L LVI DEQHRFGV QR    +K   P VL+MTATPIPRTL +
Sbjct: 1   MIVGTHSLIQDTVTYHRLGLVITDEQHRFGVNQRRIFREKGDNPDVLMMTATPIPRTLAI 60

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           T+ G++D+S I + PAGRKPI T  +   ++D V+  +K  L +  + Y+I P IEE + 
Sbjct: 61  TAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLTWIKSKLEKDAQVYFISPLIEESEA 120

Query: 498 SNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            + ++ V     L + F  ++++A++HGRM + +K+ +M  FK+   ++L++TTVIEVG+
Sbjct: 121 LDLKNAVALHQELTDFFGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGV 180

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L+ +P  +     R+  +  T 
Sbjct: 181 NVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVLVANPK-NDTGKKRMQAMCETT 239

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           DGF++AEEDLK R  GEI G +QSG+P+F +A      ++LE AR+ A  I++ DP+
Sbjct: 240 DGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARRVASQIVS-DPN 295


>gi|313893259|ref|ZP_07826834.1| helicase C-terminal domain protein [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442155|gb|EFR60572.1| helicase C-terminal domain protein [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 321

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 137/296 (46%), Positives = 196/296 (66%), Gaps = 7/296 (2%)

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           +IIGTHAL Q+ + ++ L LVI+DEQHRFGV+QR +L QK T PHVL+MTATPIPRT+ L
Sbjct: 1   MIIGTHALIQEGVNFHNLGLVIIDEQHRFGVEQRARLQQKGTYPHVLIMTATPIPRTMTL 60

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +  GD+ +S I E P GRKP+KT  +  +  D +       ++EG++ Y +CP +EE ++
Sbjct: 61  SVYGDLAVSLIKEMPPGRKPVKTYAVDSSYKDRLRTFFGKEMAEGRQVYVVCPLVEESEK 120

Query: 498 SNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            + ++  E +  L E+F     + ++HGRM   +K+ VM++F NG   LL++TTVIEVG+
Sbjct: 121 LDLQAAEELYLELKEYFYKDYEVGLVHGRMKPSEKDEVMNAFHNGDISLLVSTTVIEVGV 180

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN--SYTRLSVLKN 613
           +V +A+I+ IE AE FGL+QLHQLRGRVGRG   S CIL+     SKN  S  RL +++ 
Sbjct: 181 NVPNATIMCIEGAERFGLSQLHQLRGRVGRGSHQSYCILVSD---SKNDVSQERLKLMEQ 237

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           T+DGF +AE+DL  R  G++ G+ QSG+P   +A       +L  ARKD     +Q
Sbjct: 238 TQDGFELAEQDLLLRGSGQLFGLAQSGLPDLRVANIIKDIEILVEARKDVLAFASQ 293


>gi|298346962|ref|YP_003719649.1| putative DNA helicase RecG [Mobiluncus curtisii ATCC 43063]
 gi|304389327|ref|ZP_07371292.1| possible DNA helicase RecG [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298237023|gb|ADI68155.1| possible DNA helicase RecG [Mobiluncus curtisii ATCC 43063]
 gi|304327445|gb|EFL94678.1| possible DNA helicase RecG [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 816

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 185/632 (29%), Positives = 295/632 (46%), Gaps = 118/632 (18%)

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF---------PLIEAVYSLPTGLSV 168
           F GR   ++GK   L +   + HP Y      D            PL  A   LP   S 
Sbjct: 137 FAGR---LSGKPDSLASEAFLAHPEYRVLADYDPEIVKTLSTQPQPLYHATAGLP---SW 190

Query: 169 DLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER 227
            + K I  + L   P  +PE I   L ++++ P    A   +H+P     ++    A + 
Sbjct: 191 KIGKIIDAQLLMVNPAEIPEAIPDSLRRERNLPDAYTALLGLHHPETDAQYQ---AALDY 247

Query: 228 LAYDELLAGQIALLLMRKQFKKE--IGIPINVE------------GKIAQKILRNIPFSP 273
           L + E      AL   R Q +      +P++ +            G +  + +  +PF  
Sbjct: 248 LRFREAFTLGAALAKARNQIQSHPAWSLPVSQDVFESSTDSDGEPGDLVAQAVAGLPFQL 307

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q    ++I  D++++  M R+LQG+VGSGKT+V+ +A  AAV+ G QA  MAP  +L
Sbjct: 308 TAGQRQVWEEIAGDIAREVPMNRLLQGEVGSGKTVVSALACLAAVQNGFQAAFMAPTEVL 367

Query: 334 AQQHYEFIKKYTQN---------------TQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           A QH++ + +   +                 + + ++TG+ P   +R+  +R A G+  +
Sbjct: 368 AHQHFQTLNRLLGDLADPLGGLSGEQPGTDNVPLRLLTGSTPAPEKREIADRGAAGEPML 427

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK-LTQKATAPHVLLMTATPIPRTLVL 437
           ++GT AL  +S+Q  +L LV+VDEQHRFGV+QR   LT+   APH L MTATPIPRT+ +
Sbjct: 428 VVGTQALLTESLQLSRLALVVVDEQHRFGVEQRGALLTRGERAPHFLTMTATPIPRTVAM 487

Query: 438 TSLGDIDISKITEKPAGRKPIKTVII---PINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           T  GD+D+S + + PAGR  ++T ++    +  +     R    + +G + Y +CP+I  
Sbjct: 488 TVFGDLDVSVLRQLPAGRAEVQTFLVNEANVRWVTRAWSRAAEEIKQGGRVYVLCPKIAP 547

Query: 495 KK--------------------------ESNFRSVVERFNSLHE-------HFTSSIA-- 519
                                       ++++   +  F  L         H  +  A  
Sbjct: 548 DATGQNPVSSSDSRHPPQGDRKTRKPAVQTSWGDDLAGFGELEALEPDRILHTVTQTAAR 607

Query: 520 -------------IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                        + H  +    K+  +  F  G   LL++TTV+EVG+DV +AS++II 
Sbjct: 608 LAALPIFRDVPIGVAHSNLDSAAKQQAVSDFAAGRTPLLVSTTVVEVGMDVPEASMMIIL 667

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCIL---LYHPPLSKN---------------SYTRL 608
           +A+ +G++QLHQLRGR+GRG     C+    L  PP+S N               +  RL
Sbjct: 668 DADRYGISQLHQLRGRIGRGSRPGVCLAIAPLDFPPVSGNLPEMMALAGAGTLSPALARL 727

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
                + DGF +AE DL  R+EG++LG  QSG
Sbjct: 728 CAFAASRDGFALAEADLTIRREGDVLGQNQSG 759


>gi|119025222|ref|YP_909067.1| ATP-dependent DNA helicase [Bifidobacterium adolescentis ATCC
           15703]
 gi|118764806|dbj|BAF38985.1| ATP-dependent DNA helicase [Bifidobacterium adolescentis ATCC
           15703]
          Length = 893

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 192/596 (32%), Positives = 280/596 (46%), Gaps = 109/596 (18%)

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
           AEAF  IH+P+    F   + A   L Y+E L  Q AL+  R   +K        + ++ 
Sbjct: 299 AEAFRAIHDPQNRDGF---NKALRTLRYEEALICQTALVQSRDSSRKATATAC-ADTRLK 354

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD----------------VGSGK 306
              + ++PFS T  Q+  I DI  DM++   M R+LQG+                VGSGK
Sbjct: 355 DDFVESLPFSLTDGQQQVIADISDDMARDYPMQRLLQGEVGSGKTVVAVAAMMQAVGSGK 414

Query: 307 TLVALIAMAAAVEAG-----GQAVIMAPIGILAQQHYEFIKKYTQNTQ------------ 349
             V +       E       G    M   G  A ++ +  +  T++T             
Sbjct: 415 QAVLVAPTQVLAEQHYSSIRGMVDRMCGTGEEADENAKSGESQTKSTHRAVVDESGQVTS 474

Query: 350 ------------------------------IIVEIITGNMPQAHRRKALERIAHGQAHII 379
                                         I V ++TG M  A RR+ L + A G+  I+
Sbjct: 475 GNAPEPQNGGQSDGGQVEKLLDGQSNSLPDIPVLLLTGGMKLAARRRVLAQAASGKPCIV 534

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLT 438
           + THA F  + Q   L L ++DEQHRFGV+QR  L  K +TAPH+L+MTATPIPRT  +T
Sbjct: 535 VATHAAFSKTFQAPNLALAVIDEQHRFGVEQRESLNAKGSTAPHLLVMTATPIPRTAAMT 594

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQI--- 492
             GD+DIS +TE P GRKPI+T ++P      + E+   ++  +  G++AY +CP+I   
Sbjct: 595 WFGDLDISWLTELPGGRKPIRTFVVPEANGPLMAEMFGLIRKRIDAGERAYVVCPRIDAD 654

Query: 493 ----------------------------EEKKES-----NFRSVVERFNSLHEHFTSSIA 519
                                       +E++E      +   + ER  SL +     IA
Sbjct: 655 AKDADDAGGSGDAEVGSAFDATYDLGEDDEQREQRPPLHSVAEIAERLRSLPQFAGIRIA 714

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + GR  D  K  +M  F+ G   +L+ATTVIEVG+DV  AS ++I +A+ +GL+QLHQL
Sbjct: 715 TLTGRDDDETKSQIMADFEAGVTPILVATTVIEVGVDVAQASCMVIFDADRYGLSQLHQL 774

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           RGRVGRG   S   L+   P   ++  RL V+  T DG  IA+ DL+ R  G++LG  QS
Sbjct: 775 RGRVGRGGTESGAFLISRAPEGSDAAKRLDVIAGTLDGAEIAQADLEFRGAGDVLGDAQS 834

Query: 640 GMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           G    L     + D  ++E AR +A  ++ +DP L     Q    +L   + NE F
Sbjct: 835 GGKSGLKLLRVVKDVKIIEEARAEAAKLVAEDPTLQGYV-QLAGAVLDFTRGNETF 889


>gi|210635938|ref|ZP_03298631.1| hypothetical protein COLSTE_02570 [Collinsella stercoris DSM 13279]
 gi|210158299|gb|EEA89270.1| hypothetical protein COLSTE_02570 [Collinsella stercoris DSM 13279]
          Length = 421

 Score =  268 bits (685), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 157/422 (37%), Positives = 233/422 (55%), Gaps = 27/422 (6%)

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT VA  A+AA  ++G QA +MAP G+LAQQ+        +   +   ++TG  P A R
Sbjct: 1   GKTAVACFALAAVADSGMQACVMAPTGVLAQQYAVKSGPLLEAAGVSWALLTGATPHAER 60

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
              LER+A G+  ++ GTHA+  D + +  L LV++DEQHRFGV QR  L  K     +L
Sbjct: 61  AMLLERLASGEISVLFGTHAVLGDDVAFEHLSLVVIDEQHRFGVGQRNALRSKGPGADLL 120

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL L+  GD+D S I  +P     + T ++     D     ++  L++G++
Sbjct: 121 VMTATPIPRTLALSVYGDLDTSVIRHRPIAGAGVTTRVLEGPNRDIAYGAVREALAQGRQ 180

Query: 485 AYWICPQI--EEKKES-----------NFRS--------VVERFNSLHEHFT-SSIAIIH 522
           AY ICP +  +E  ES           N R+        V      L   F+ + + ++H
Sbjct: 181 AYVICPMVSPQEGAESLEDVPGLDVDENGRAHQAVTLHDVQTEVEELRRVFSPARVEMLH 240

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+MS   K+ V+D F+ G   +L+ATTV+EVG+DV +A++++IEN E FGLA LHQLRGR
Sbjct: 241 GKMSARAKDEVIDEFRAGRIDVLVATTVVEVGVDVPNATVMLIENGERFGLATLHQLRGR 300

Query: 583 VGRGEEISSCILLYHPPLSKNSYT----RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           VGRG    +C ++      +   T    RL  L  T+DGF +AE DL+ R EGEILG++Q
Sbjct: 301 VGRGSLPGTCFVITEVRSRRGKRTPALERLEALAKTDDGFELAEMDLRLRHEGEILGLRQ 360

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
            G         +    ++E A +DA  +L    DL +V    +R  + + +Y + F+ + 
Sbjct: 361 HGGVSLRFVDLDADVDVIEHAHEDADELLRYSHDLGAVATLPLRHEV-VSRYGDVFKEVS 419

Query: 699 AG 700
            G
Sbjct: 420 GG 421


>gi|315655508|ref|ZP_07908407.1| DNA helicase RecG [Mobiluncus curtisii ATCC 51333]
 gi|315490163|gb|EFU79789.1| DNA helicase RecG [Mobiluncus curtisii ATCC 51333]
          Length = 816

 Score =  268 bits (684), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 183/632 (28%), Positives = 296/632 (46%), Gaps = 118/632 (18%)

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF---------PLIEAVYSLPTGLSV 168
           F GR   ++GK     +   + HP Y      D            PL  A   LP   S 
Sbjct: 137 FAGR---LSGKPDSRASEAFLAHPEYRVLADYDPEVVKTLSTRPQPLYHATAGLP---SW 190

Query: 169 DLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER 227
            + K I  + L   P  +PE I   L ++++ P    A   +H+P     ++    A + 
Sbjct: 191 KIGKIIDAQLLMVNPAEIPEAIPDSLRRERNLPDAYTALLGLHHPETDAQYQ---AALDY 247

Query: 228 LAYDELLAGQIALLLMRKQFKKE--IGIPINVE------------GKIAQKILRNIPFSP 273
           L + E      AL   R Q +      +P++ +            G +  +++  +PF  
Sbjct: 248 LRFREAFTLGAALAKARNQIQSHPAWSLPVSQDVFASRTDSGGEPGDLVTQVVAGLPFQL 307

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q    +++  D++++  M R+LQG+VGSGKT+V+ +A  AAV+ G QA  MAP  +L
Sbjct: 308 TAGQRQVWEELAGDIAREVPMNRLLQGEVGSGKTVVSALACLAAVQNGFQAAFMAPTEVL 367

Query: 334 AQQHYEFIKKYTQN---------------TQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           A QH++ + +   +                 + + ++TG+ P   +R+  +R A G+  +
Sbjct: 368 AHQHFQTLNRLLGDLADPLEGLSGKQPSMDNVPLRLLTGSTPAPEKREIADRGAAGEPML 427

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVL 437
           ++GT AL  +S+Q  +L LV+VDEQHRFGV+QR  L  +   APH L MTATPIPRT+ +
Sbjct: 428 VVGTQALLTESLQLSRLALVVVDEQHRFGVEQRGALLARGERAPHFLTMTATPIPRTVAM 487

Query: 438 TSLGDIDISKITEKPAGRKPIKTVII---PINRIDEVIERLKVVLSEGKKAYWICPQI-- 492
           T  GD+D+S + + PAGR  ++T ++    +  +     R    + +G + Y +CP+I  
Sbjct: 488 TVFGDLDVSVLRQLPAGRADVQTFLVNEANVRWVTRAWSRAAEEIKQGGRVYVLCPKIAP 547

Query: 493 ------------------------EEKKESNFRSVVERFNSLHE-------HFTSS---- 517
                                   +   ++++   +  F  L E       H  +     
Sbjct: 548 DATGQDPVSSSDSQHPPQGDRKTRKPTAQTSWGDDLAGFGELEELEPDRILHTVTQTAAQ 607

Query: 518 -----------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      I + H  +    K+  +  F  G   LL++TTV+EVG+DV +AS++II 
Sbjct: 608 LTALPIFRNIPIGVAHSNLDSGAKQQAVSDFAAGRTPLLVSTTVVEVGMDVPEASMMIIL 667

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCIL---LYHPPLSKN---------------SYTRL 608
           +A+ +G++QLHQLRGR+GRG     C+    L  PP+S N               +  RL
Sbjct: 668 DADRYGISQLHQLRGRIGRGSRPGVCLAIAPLDFPPVSDNLPELMSLAGSGTLSPALARL 727

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
                + DGF +AE DL  R+EG++LG  QSG
Sbjct: 728 CAFAASRDGFALAEADLSIRREGDVLGQNQSG 759


>gi|315656585|ref|ZP_07909472.1| DNA helicase RecG [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492540|gb|EFU82144.1| DNA helicase RecG [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 816

 Score =  268 bits (684), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 185/632 (29%), Positives = 295/632 (46%), Gaps = 118/632 (18%)

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF---------PLIEAVYSLPTGLSV 168
           F GR   ++GK   L +   + HP Y      D            PL  A   LP   S 
Sbjct: 137 FAGR---LSGKPDSLASEAFLAHPEYRVLADYDPEIVKTLSTQPQPLYHATAGLP---SW 190

Query: 169 DLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER 227
            + K I  + L   P  +PE I   L ++++ P    A   +H+P     ++    A + 
Sbjct: 191 KIGKIIDAQLLMVNPAEIPEAIPDSLRRERNLPDAYTALLGLHHPETDAQYQ---AALDY 247

Query: 228 LAYDELLAGQIALLLMRKQFKKE--IGIPINVE------------GKIAQKILRNIPFSP 273
           L + E      AL   R Q +      +P++ +            G +  + +  +PF  
Sbjct: 248 LRFREAFTLGAALAKARNQIQSHPAWSLPVSQDVFESSTDSDGEPGDLVAQAVAGLPFQL 307

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q    ++I  D++++  M R+LQG+VGSGKT+V+ +A  AAV+ G QA  MAP  +L
Sbjct: 308 TAGQRQVWEEISGDIAREVPMNRLLQGEVGSGKTVVSALACLAAVQNGFQAAFMAPTEVL 367

Query: 334 AQQHYEFIKKYTQN---------------TQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           A QH++ + +   +                 + + ++TG+ P   +R+  +R A G+  +
Sbjct: 368 AHQHFQTLNRLLGDLADPLGGLSGEQPGTDNVPLRLLTGSTPAPEKREIADRGAAGEPML 427

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK-LTQKATAPHVLLMTATPIPRTLVL 437
           ++GT AL  +S+Q  +L LV+VDEQHRFGV+QR   LT+   APH L MTATPIPRT+ +
Sbjct: 428 VVGTQALLTESLQLSRLALVVVDEQHRFGVEQRGALLTRGERAPHFLTMTATPIPRTVAM 487

Query: 438 TSLGDIDISKITEKPAGRKPIKTVII---PINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           T  GD+D+S + + PAGR  ++T ++    +  +     R    + +G + Y +CP+I  
Sbjct: 488 TVFGDLDVSVLRQLPAGRAEVQTFLVNEANVRWVTRAWSRAAEEIKQGGRVYVLCPKIAP 547

Query: 495 KK--------------------------ESNFRSVVERFNSLHE-------HFTSSIA-- 519
                                       ++++   +  F  L         H  +  A  
Sbjct: 548 DATGQNPVSSSDSRHPPQGDRKTRKPAVQTSWGDDLAGFGELEALEPDRILHTVTQTAAR 607

Query: 520 -------------IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                        + H  +    K+  +  F  G   LL++TTV+EVG+DV +AS++II 
Sbjct: 608 LATLPIFRDIPIGVAHSNLDSAAKQQAVSDFAAGRTPLLVSTTVVEVGMDVPEASMMIIL 667

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCIL---LYHPPLSKN---------------SYTRL 608
           +A+ +G++QLHQLRGR+GRG     C+    L  PP+S N               +  RL
Sbjct: 668 DADRYGISQLHQLRGRIGRGSRPGVCLAIAPLDFPPVSGNLPEMMALSGAGTLSPALARL 727

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
                + DGF +AE DL  R+EG++LG  QSG
Sbjct: 728 CAFAASRDGFALAEADLTIRREGDVLGQNQSG 759


>gi|256545262|ref|ZP_05472627.1| ATP-dependent DNA helicase RecG [Anaerococcus vaginalis ATCC 51170]
 gi|256399089|gb|EEU12701.1| ATP-dependent DNA helicase RecG [Anaerococcus vaginalis ATCC 51170]
          Length = 659

 Score =  267 bits (683), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 164/483 (33%), Positives = 266/483 (55%), Gaps = 16/483 (3%)

Query: 159 VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
           +Y L   L+       I +AL         ++K +L   +F         IH P      
Sbjct: 140 IYPLTKSLTNKNLSDFIGQALEFFDENEVLLDKKVLDDFNFSDKLSNLKEIHFPTS---L 196

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           E    A+ ++   +LL   I + +M+K+   +++ +  N+       IL  + F  T SQ
Sbjct: 197 ENLKNAKSQIKIIDLLKELIFIYVMQKENSYQDLNLKYNL-----NDILNKLDFKLTPSQ 251

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             ++ +IL+D + K+ M R+L GDVGSGKT++ALI M        Q  +M P  +LA Q 
Sbjct: 252 YKSLIEILKDSTSKSIMNRLLCGDVGSGKTIIALIVMIIFSINSYQTCMMVPTEVLAIQQ 311

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           YE  K++ ++  + + ++T +       K   +I +G+  I+IGTHAL  D +++  L L
Sbjct: 312 YEKNKEFVESFGLKISLLTSSTKNKEDLK--NKIKNGEIDIVIGTHALIVDDVEFKNLKL 369

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           ++ DEQHRFGV+QR  L +K    + L MTATPIPRTL L     +D+S+ITE P GR  
Sbjct: 370 IVADEQHRFGVRQRQALYEKGNDANYLTMTATPIPRTLFLKMKKLLDLSQITELPKGRGE 429

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           I T ++ ++  + +  ++   +  G++ Y +   IE    ++  ++ +R+    ++    
Sbjct: 430 IITELVLLSMENSLFSKIDDFIKSGRQVYVVSDSIESDDINSLENLYKRYKKRFKNI--R 487

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  +HG++   +KE ++  F +G   +LI+TTVIEVGIDV +A+ +II NA +FGL+ LH
Sbjct: 488 IEKLHGKLKASEKEEILRDFSDGKIDILISTTVIEVGIDVSNANCMIIYNANNFGLSSLH 547

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGR+GRG   S C L+       +  ++L+++KN+ DGF IA++DLK R  G+IL   
Sbjct: 548 QLRGRIGRGSYKSFCYLISEKV---DERSKLNIIKNSNDGFEIAKKDLKLRGAGKILSTI 604

Query: 638 QSG 640
           Q G
Sbjct: 605 QHG 607


>gi|154486604|ref|ZP_02028011.1| hypothetical protein BIFADO_00421 [Bifidobacterium adolescentis
           L2-32]
 gi|154084467|gb|EDN83512.1| hypothetical protein BIFADO_00421 [Bifidobacterium adolescentis
           L2-32]
          Length = 887

 Score =  267 bits (682), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 192/596 (32%), Positives = 280/596 (46%), Gaps = 109/596 (18%)

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
           AEAF  IH+P+    F   + A   L Y+E L  Q AL+  R   +K        + ++ 
Sbjct: 293 AEAFMAIHDPQNRDGF---NKALRTLRYEEALICQTALVQSRDSSRKATATAC-ADTRLK 348

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD----------------VGSGK 306
              + ++PFS T  Q+  I DI  DM++   M R+LQG+                VGSGK
Sbjct: 349 DDFVESLPFSLTDGQQQVIADISDDMARDYPMQRLLQGEVGSGKTVVAVAAMMQAVGSGK 408

Query: 307 TLVALIAMAAAVEAG-----GQAVIMAPIGILAQQHYEFIKKYTQNTQ------------ 349
             V +       E       G    M   G  A ++ +  +  T++T             
Sbjct: 409 QAVLVAPTQVLAEQHYSSIRGMVDRMCGTGEEADENAKSGESQTKSTHHAVVDESGQVTS 468

Query: 350 ------------------------------IIVEIITGNMPQAHRRKALERIAHGQAHII 379
                                         I V ++TG M  A RR+ L + A G+  I+
Sbjct: 469 GNAPEPQNGGQSDGGQVEKLLDGQSNSLPDIPVLLLTGGMKLAARRRVLAQAASGKPCIV 528

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLT 438
           + THA F  + Q   L L ++DEQHRFGV+QR  L  K +TAPH+L+MTATPIPRT  +T
Sbjct: 529 VATHAAFSKTFQAPNLALAVIDEQHRFGVEQRESLNAKGSTAPHLLVMTATPIPRTAAMT 588

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQI--- 492
             GD+DIS +TE P GRKPI+T ++P      + E+   ++  +  G++AY +CP+I   
Sbjct: 589 WFGDLDISWLTELPGGRKPIRTFVVPEANGPLMAEMFGLIRKRIDAGERAYVVCPRIDAD 648

Query: 493 ----------------------------EEKKES-----NFRSVVERFNSLHEHFTSSIA 519
                                       +E++E      +   + ER  SL +     IA
Sbjct: 649 AKDADDAGGSGDAEVGYAFDATYDLGEDDEQREQRPPLHSVAEIAERLRSLPQFAGIRIA 708

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + GR  D  K  +M  F+ G   +L+ATTVIEVG+DV  AS ++I +A+ +GL+QLHQL
Sbjct: 709 TLTGRDDDKTKSQIMADFEAGVTPILVATTVIEVGVDVAQASCMVIFDADRYGLSQLHQL 768

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           RGRVGRG   S   L+   P   ++  RL V+  T DG  IA+ DL+ R  G++LG  QS
Sbjct: 769 RGRVGRGGTESGAFLISRAPEGSDAAKRLDVIAGTLDGAEIAQADLEFRGAGDVLGDAQS 828

Query: 640 GMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           G    L     + D  ++E AR +A  ++ +DP L     Q    +L   + NE F
Sbjct: 829 GGKSGLKLLRVVKDVKIIEEARAEAAKLVAEDPTLQGYV-QLAGAVLDFTRGNETF 883


>gi|162447096|ref|YP_001620228.1| ATP-dependent DNA helicase [Acholeplasma laidlawii PG-8A]
 gi|161985203|gb|ABX80852.1| ATP-dependent DNA helicase [Acholeplasma laidlawii PG-8A]
          Length = 649

 Score =  267 bits (682), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 187/582 (32%), Positives = 296/582 (50%), Gaps = 56/582 (9%)

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           + LL F R  + +   F    K+ V GK    KN I +    YI   S+ ++ P I+  Y
Sbjct: 86  VKLLIFGR--DYISKEFSLNDKVIVKGKYNMFKNEINVT---YI---SKKIDTPNIQPKY 137

Query: 161 SLP-------TGLSVDLFKKIIVEALSRLPVLPEWIEKD-LLQKKSFPSIAEAFNIIHNP 212
            +          +   +F   +V+    LP   ++IE + L+ +K+      A   +H P
Sbjct: 138 QIEHISDRTIQKMIEYVFSNNLVDVFETLPT--KFIEHEKLMHRKT------AILTMHFP 189

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           +   D E    A+ R   +E     +   L M  + K+    P++ +    ++ +  +P+
Sbjct: 190 KNETDLEI---AQYRFKVEEAFFHLMKYHLSMPPKLKR---TPLSYDIGWVKEQISLLPY 243

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q+ A+ D  +D      M R++QGDVG+GKT V  IA   A+ AG Q   +AP  
Sbjct: 244 QLTLDQQEAVNDCFRDFKSDYSMYRLIQGDVGTGKTFVTFIAALGAISAGYQVAFLAPTE 303

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQA-------HRRKALERIAHGQAHIIIGTHA 384
           ILA+QHYE   K+            G++P          +++ + R+     +I+ GTH 
Sbjct: 304 ILARQHYENFNKHF-----------GHLPSGLLTSSLKDKKETMNRLNSNDVNIVFGTHI 352

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L  +++ + KL LV++DEQH+FGV+ R  L +K+     + ++ATPIPR+L LT  G ++
Sbjct: 353 LSSEAVIFDKLGLVVIDEQHKFGVETRESLIKKSVTGDTIYLSATPIPRSLSLTYFGSLE 412

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           +S I +KP    PI++ ++    I ++I  LKV     ++++ + P I E  +S+  S+ 
Sbjct: 413 VSNIKQKPVNTPPIESYLLDDKDISKIIAALKVAGQNNEQSFIVVPAISEGNKSH--SIH 470

Query: 505 ERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
             F+ L  HF   +  +IHG++   + E +MD F      +L++TT+IEVGIDV +AS I
Sbjct: 471 SVFSILEPHFNPDNFYVIHGQLKYEEIELIMDRFMQNPKGILLSTTIIEVGIDVKNASTI 530

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           II  A++FGL+QLHQLRGRVGRG     C  +     SK    RL+ L  T DGFL+++ 
Sbjct: 531 IIMGADNFGLSQLHQLRGRVGRGSIPGKCYFVS----SKKDVERLNFLLQTTDGFLLSQY 586

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           DLK R  G    I QSG  +F          LL+   KD K+
Sbjct: 587 DLKLRGPGVFSSIIQSGYTRFEYLDLNTDLKLLQGIVKDVKY 628


>gi|47093048|ref|ZP_00230826.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes str. 4b
           H7858]
 gi|47018549|gb|EAL09304.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes str. 4b
           H7858]
          Length = 542

 Score =  266 bits (681), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 179/533 (33%), Positives = 285/533 (53%), Gaps = 20/533 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 23  PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 75

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 76  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 134

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWI 189
           K + ++           S++     +E VY L   L     +K    A  S    + E I
Sbjct: 135 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEVI 190

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248
             +LL+K       EA  I+H P   K+ E    AR R+ Y+E L  Q+ +   RK + +
Sbjct: 191 PSNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIERE 247

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT+
Sbjct: 248 KSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTV 307

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ L
Sbjct: 308 VASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELL 367

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 368 AMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMTA 427

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y I
Sbjct: 428 TPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYII 487

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKN 539
           CP I E ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F N
Sbjct: 488 CPLIGESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNN 540


>gi|227485071|ref|ZP_03915387.1| RecG family helicase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236904|gb|EEI86919.1| RecG family helicase [Anaerococcus lactolyticus ATCC 51172]
          Length = 663

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 198/646 (30%), Positives = 339/646 (52%), Gaps = 57/646 (8%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L++ +G+G K +  LSK+    +    R  DL  Y+P  + DR  +  + + S  R    
Sbjct: 5   LTSLKGIGPKKAKALSKL----DIYTVR--DLYTYYPREYEDRRIKASVLKASPTR---- 54

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF----YRKTEMLK-NVFFEGRKITVTG 127
           + Y    +  +   +R   ++       ++ ++F    ++K  ++  N  F  RKI +  
Sbjct: 55  SYYFEWKAISKAYVKRLKNMI-------VSYMYFAEGDFKKIRVIWFNDRFSIRKIRLN- 106

Query: 128 KIKKLKNRIIMVHPHY-----IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           +  K   ++   + +Y     IF N        I ++Y L +G+S       I EAL   
Sbjct: 107 ETYKFYTKVAYKNGYYESVNPIFENLDGDMIGAIYSMYPLTSGISQKNLNAFIKEALKEF 166

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS------PARERLAYDELLAG 236
            V      +D+L K    S+ E FN++   +  K+  + S       A+  +   +LL  
Sbjct: 167 DV-----REDILSK----SLKERFNLMDREKALKEVHFPSNLQTLFKAKTDIKIGDLLKE 217

Query: 237 QIALLLMRK--QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
            I L  + K  + K++I +  ++     ++IL  + FS T+SQ  ++K+IL+D  +   M
Sbjct: 218 LIFLDYLGKLQRNKQDISLKYDL-----KEILAKLSFSLTRSQLRSLKEILEDSDKDISM 272

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+L GDVGSGKT+VA+++M        QA +M P  +LA Q YE  K +     + + +
Sbjct: 273 NRLLIGDVGSGKTIVAMVSMLVFGLNSYQAAMMVPTEVLAIQQYEKYKDFIGGFGLKLAL 332

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG     ++ +  E +  G   +++GTHAL ++ +++  L LV+ DEQHRFGV+QR +L
Sbjct: 333 LTG--SSKNKEEIKEGLRDGTIDMVVGTHALIEEDVKFRNLRLVVNDEQHRFGVRQRQEL 390

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +K    + L MTATPIPRTL L     +D+S I E P GR  + T I+  +  + + E 
Sbjct: 391 AKKGIDANYLTMTATPIPRTLSLRINKMLDLSIINELPKGRASVITSIVNEDHQEFLFEN 450

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           +K  L  G++ Y +   I+ +  ++  ++ +++  + +  T  +  +HG++    KE ++
Sbjct: 451 IKEGLKAGRQVYVVSNNIDAEDTNSVENLYKKYKKIFK--THRVEKLHGKLKASLKEEIL 508

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F N    +LI+TTVIEVGIDV +A+ ++I N+ +FGL+QLHQLRGRVGRGE  S C L
Sbjct: 509 KKFNNHEIDILISTTVIEVGIDVANANTMVIYNSNNFGLSQLHQLRGRVGRGEYDSYCYL 568

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           +       N  ++L +L ++ DGF I+++D + R  G+IL + Q G
Sbjct: 569 VSKDV---NPKSKLKILVDSNDGFEISQKDYELRGGGKILSLIQHG 611


>gi|306992379|gb|ADN19306.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 442

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 165/450 (36%), Positives = 265/450 (58%), Gaps = 14/450 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+     E    A+ R  Y EL   
Sbjct: 59  ALKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQ---AKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           M+ F N    +L++TTVIE G++V +A+++
Sbjct: 413 MEEFVNREIDILVSTTVIEEGVNVPNATVM 442


>gi|298708153|emb|CBJ30494.1| ATP-dependent DNA helicase RecG [Ectocarpus siliculosus]
          Length = 1002

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 160/438 (36%), Positives = 242/438 (55%), Gaps = 67/438 (15%)

Query: 284 ILQDMSQKN-----RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +L+DM         RM R+LQGDVGSGKT VA +AM  A   G Q+ ++AP  +L  QH 
Sbjct: 29  VLKDMEGSGSCSSLRMFRLLQGDVGSGKTAVAFLAMLRAAGQGSQSCMLAPTEVLTVQHL 88

Query: 339 EFIKKYTQNTQ-------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-LFQDSI 390
           + ++   +  +       + VE++TG++    R++ L  +  G+  I++ THA L   S 
Sbjct: 89  QTLRSMAEGIERPDGKGNLRVELLTGSIKGKARQQLLNDVKSGEVDILVATHAVLTSAST 148

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L +VDE+ RFGV+QR KLT    A HVL ++ATPIPR+L L   GD++IS+I E
Sbjct: 149 AFRDLGLAVVDEEQRFGVEQRDKLT--GFAQHVLYLSATPIPRSLTLALFGDMEISQIRE 206

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR----SVVER 506
            P G   I+T +IP+ +  EV++RLK     G++        ++K ES+ R    S  ER
Sbjct: 207 MPRGTANIETTLIPVAKAKEVMDRLK-----GRE------DTDDKSESSTRQHLASATER 255

Query: 507 FNSL-HEHFTSSIAIIHGRMSDIDKESVMDSFKNG----TCKLLIATTVIEVGIDVVDAS 561
           +++L  E     + ++HG+M+  +K   +  F  G      ++L++T++IEVG+DV  A 
Sbjct: 256 YDALVKELGEDRVTLLHGKMTSAEKNKRLSEFSGGEKGKGLRVLVSTSIIEVGVDVPRAG 315

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGE------------------------------EISS 591
           + ++ENAE FGL+QLHQLRGR+GR +                              + S 
Sbjct: 316 VCVVENAEMFGLSQLHQLRGRLGRTDRGKRERSTTAPTGSLQQPASPEEDPSQDKRQTSH 375

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM--PKFLIAQP 649
           CILLY P +  ++  RL  ++ T DGFL+AE DL  R  GE+LG++Q G    KF +A  
Sbjct: 376 CILLYGPDVGNDATERLKAVRKTRDGFLLAERDLALRGPGEVLGMRQKGYIEGKFKVADL 435

Query: 650 ELHDSLLEIARKDAKHIL 667
               SL E A K A+ ++
Sbjct: 436 ARQGSLAEHASKRARRLV 453


>gi|153810839|ref|ZP_01963507.1| hypothetical protein RUMOBE_01223 [Ruminococcus obeum ATCC 29174]
 gi|149833235|gb|EDM88317.1| hypothetical protein RUMOBE_01223 [Ruminococcus obeum ATCC 29174]
          Length = 517

 Score =  263 bits (672), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 168/519 (32%), Positives = 285/519 (54%), Gaps = 18/519 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L T +GVG K      K+       +T   DLL Y+P ++        I+++ E  +  +
Sbjct: 5   LRTLKGVGDKTEKLFFKL----GIYDTD--DLLHYYPRNYDAFEAPVDIADLEEGTVKAV 58

Query: 73  TGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           +  +         K R+     +ND +G++++++F      L+ V     +    G+I +
Sbjct: 59  SAAVCSGVYVTSAKGRQIITASINDSSGKLSVIWF--NMPYLRTVLKRDSQFVFRGRIVR 116

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
            ++ + M HP      +       ++ VY L  GLS     K+I + L  LP+  E++ +
Sbjct: 117 KQSHLEMEHPEVFTPAAYGEILHSLQPVYGLTGGLSNKTVTKMIHQLLKNLPMYSEFLPE 176

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           ++ ++     I  A   IH P    + E    +R+RL +DE L   +++ +++++ ++  
Sbjct: 177 EIRERYQLADINYALRTIHFP---GNMEELLLSRKRLVFDEFLLFILSVQMLKEKSEETP 233

Query: 252 G-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
              PIN +    ++I+ N+P+S T +Q +   +I +DMS +  M R++QGDVGSGKT++A
Sbjct: 234 NYFPIN-KTWTTEQIIENLPYSLTGAQLNTWHEIERDMSGQALMSRLVQGDVGSGKTIIA 292

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIK-KYTQNTQIIVEIITGNMPQAHRRKAL 368
            +AM  A E G QA +MAP  +LA+QHY+ F++ +  Q     V ++TG+     +R+  
Sbjct: 293 FLAMILACENGYQAALMAPTEVLARQHYDGFLRLQEEQGLNFHVVLLTGSNTAREKREIY 352

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           + IA G+A IIIGTHAL Q+ ++Y+ L LV+ DEQHRFGV+QR  LT +   P++L+M+A
Sbjct: 353 QHIASGEAQIIIGTHALIQEKVEYHDLALVVTDEQHRFGVKQREALTTRGNPPNILVMSA 412

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +   GD+DIS I E PA R PIK  ++  +   +    ++  + EG++AY I
Sbjct: 413 TPIPRTLAIILYGDLDISIIDELPAKRLPIKNCVVNTSYRPKAYAFIQRQVREGRQAYII 472

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRM 525
           CP +EE +  +  +V++    L   F S I +  +HG+M
Sbjct: 473 CPMVEESEGLDAENVLDYTRKLKGIFPSDINVSFLHGKM 511


>gi|306992259|gb|ADN19246.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 430

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 162/438 (36%), Positives = 256/438 (58%), Gaps = 14/438 (3%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           G +  + GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  
Sbjct: 1   GEEYIINGKLQFKYGQLIVENP--VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFN 58

Query: 178 AL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL   +  + E+ +++ L +K    I  A   I+ P+      +   A+ R  Y EL   
Sbjct: 59  ALHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNE---AYLEQAKYRFKYQELFLL 115

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL L+++  K + GI    VE K     L  +PF  T +Q   +K+I+ DM+    M 
Sbjct: 116 QMALFLVKRSVKGKKGIKFERVELK---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMN 172

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + ++
Sbjct: 173 RLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLL 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT
Sbjct: 233 SGSISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLT 292

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K   P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E  
Sbjct: 293 KKGENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFA 352

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
              + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE V
Sbjct: 353 MKEVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKV 412

Query: 534 MDSFKNGTCKLLIATTVI 551
           M+ F NG   +L++TTVI
Sbjct: 413 MEEFVNGKIDILVSTTVI 430


>gi|269215473|ref|ZP_06159327.1| ATP-dependent DNA helicase RecG [Slackia exigua ATCC 700122]
 gi|269130960|gb|EEZ62035.1| ATP-dependent DNA helicase RecG [Slackia exigua ATCC 700122]
          Length = 723

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 204/636 (32%), Positives = 322/636 (50%), Gaps = 49/636 (7%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY---KILLNDGTG 99
           DL+ ++P  +ID      I        VTI G +  H     + RR     ++ + DGTG
Sbjct: 39  DLVQHYPRRYIDMTRLDTIEHAPLGERVTIIGEV--HEVVLKRPRRDLSLVEVTVVDGTG 96

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA- 158
            + + FF  K   L+    +G ++ V+G+++       M  P   F +  D   P++   
Sbjct: 97  TLIVTFF--KQPWLQRSIRQGMRVGVSGELEFNYGYKRMKSP---FLDVIDEGGPMLAGS 151

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
              V+     +S  + +K+I  AL+ +    + +   L  +    S A A   IH P+ A
Sbjct: 152 IIPVHGATEKVSAGIMRKVIRAALASIQGCFDPLPLRLRTRYRLMSRAAALASIHFPQTA 211

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPT 274
            D    + A+ RLAY+ELL  ++ LL   + F +     ++V +G  ++ +   +PFS T
Sbjct: 212 DDI---AQAKRRLAYEELLLLEMHLLASARSFTQGKAAHVHVFDGPFSRALSAALPFSLT 268

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  A+ DI   M+  + M  +L GDVG+GKT+VA  A AAA +A  Q ++MAP  +LA
Sbjct: 269 DDQLRAVADIQGRMATDSAMSHLLLGDVGTGKTIVAAFAAAAAADARAQTLMMAPTEVLA 328

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            Q+   +        I   ++TG+ P A RR  L  +  G   ++ GTHAL +  +  + 
Sbjct: 329 SQYARALGPLFDAAGITWALLTGSTPDADRRDMLALLESGHIDVLFGTHALIEPDVVCHD 388

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
             LVIVDEQ RFGV+QR  L  K   P  L MTATPIPRTL L   G++ +S + + P  
Sbjct: 389 CGLVIVDEQQRFGVRQRADLLAKGVLPDALYMTATPIPRTLALALYGNLSLSYLKDMPEN 448

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK-------------KESNFR 501
           R    T ++         + ++   ++G++A+ ICP +  K              E++  
Sbjct: 449 RPGRTTHVLGFRERGRAYDAVRAACAKGRQAFVICPLVGTKPPRDEGAHPRPRDDEADRE 508

Query: 502 SVVERFNSLHEHFTSS-----------------IAIIHGRMSDIDKESVMDSFKNGTCKL 544
             ++ F+ L E+   +                 + ++HG+M   +KE  M  F+ G   +
Sbjct: 509 PFIDSFDDLPENNVRAAEAEAAFLQAKVFKEFRVGLLHGKMKPAEKEEAMARFREGGIDV 568

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+ATTV+EVG+DV +A+ +++E+AE FGL+QLHQLRGRVGRG      + L     S  +
Sbjct: 569 LVATTVVEVGVDVPNATCMVVEDAERFGLSQLHQLRGRVGRGGMRGE-VYLVAATSSDEA 627

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
             RLS ++ T+DGF +AE DL  R+EG+ILG +Q G
Sbjct: 628 LERLSAMEATDDGFELAERDLALRREGDILGNRQHG 663


>gi|194246457|ref|YP_002004096.1| ATP-dependent DNA helicase [Candidatus Phytoplasma mali]
 gi|193806814|emb|CAP18241.1| ATP-dependent DNA helicase [Candidatus Phytoplasma mali]
          Length = 626

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 166/477 (34%), Positives = 275/477 (57%), Gaps = 32/477 (6%)

Query: 173 KIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
           KII   L++ P ++ E +   +++K +F +  EAF  +H P   +  +    A +RL Y+
Sbjct: 152 KIIKYILNKYPQLIKENLPLKIIKKYNFMTRIEAFKNLHLPENNQKLKL---AFKRLKYE 208

Query: 232 ELLAGQIALLLMRK--QFKKEIGI--PINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           E      A ++ +K  Q KK +    P+    K+ +KI+  IPF  T SQ+  I  I +D
Sbjct: 209 E------AFIISKKLFQIKKNLPFKDPLEYNIKLVKKIITTIPFELTLSQKKTINSIYKD 262

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQ 346
             +++++ R++QGDVGSGKT++A ++    + A  Q ++MAP  ILAQQHY  F K +  
Sbjct: 263 FKKQHQVQRLIQGDVGSGKTIIAFLSAFGVITAYKQVLMMAPTEILAQQHYLNFNKMFPG 322

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              +I+           +    ++I + +  +IIGTH L   +I ++ L LVI+DEQH+F
Sbjct: 323 VKSVIL-----TSKNKKKEILKKQIKNNEIQMIIGTHIL--ANIDFFSLGLVIIDEQHKF 375

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           G++ + K   K    +++ +TATPIP+TL LT L +I++S + +     K + T  I   
Sbjct: 376 GLEIKQKAIFKDPTANIIYLTATPIPKTLALTYLENIEVSFVEKNEMLNKKVITQQI--- 432

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
           +  +++E LK       + Y + P I++ K+ NF ++V+  + L      ++ I+HG+ +
Sbjct: 433 KKRQMLEILKKNQQNNSQTYIVVPAIKDNKK-NF-NIVQITDYLETANIDNLYILHGKQN 490

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              +E+++ +F N  C +L+ATT+IEVGID+ + + III  A +FGL+QLHQLRGRVGRG
Sbjct: 491 KEKQETLIKNFINNKCGILLATTIIEVGIDIPNVNTIIILGANYFGLSQLHQLRGRVGRG 550

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
            +   C L     +++    RL +L+   DGF+++  DLK+R  GE LG+KQSG  K
Sbjct: 551 YKQGYCFL-----ITEKENERLKILQKEHDGFVLSNYDLKKRGPGEFLGLKQSGYFK 602


>gi|225873359|ref|YP_002754818.1| ATP-dependent DNA helicase RecG [Acidobacterium capsulatum ATCC
           51196]
 gi|225793108|gb|ACO33198.1| ATP-dependent DNA helicase RecG [Acidobacterium capsulatum ATCC
           51196]
          Length = 775

 Score =  257 bits (656), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 156/476 (32%), Positives = 260/476 (54%), Gaps = 21/476 (4%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL + P  + DR +   + ++    + ++   +      + +    +++ +  GT  + 
Sbjct: 32  DLLLHLPFRYEDRLHPRALMDLVPGEMASVIAEVRGTILLRTRNMPIFEMTVGQGTTAMK 91

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN--RIIMVHPHY-IFHNSQDVNFPLIEA- 158
            ++F+     LK+ F  G+ + + GK++  ++     M+ P   +    +D    ++E  
Sbjct: 92  CIWFH--GTYLKDRFQAGQTVALFGKVEPSRSTKNFKMIQPQVEVLREGKDQEDEMLEVG 149

Query: 159 ----VYSLPTG--LSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHN 211
               VY    G  LS    ++++   L  +   +PE + + LL +   PS  EA  ++H 
Sbjct: 150 RITPVYESLGGSQLSTRWIRRVLFHLLREIEGNVPETLPRSLLLRLGLPSREEALKLVHF 209

Query: 212 PRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           P           W +PA +RL ++EL   ++ L L R++F +  G+P   + K+   +  
Sbjct: 210 PAAGTAVSTLQGWATPAHKRLIFEELFYLELGLELKRRKFHERQGLPFRADDKVRAALRA 269

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +PF PT +Q+ A+ +I+ DM Q   M R+LQGDVGSGKT+VA+ AM  A+E G QA +M
Sbjct: 270 ILPFHPTAAQKRALGEIVADMRQPRPMRRLLQGDVGSGKTIVAVQAMVIAMENGYQAALM 329

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           AP  ILA QHY   ++  + ++    I+  TG++ +  +R    +I  G+A ++IGTHAL
Sbjct: 330 APTEILATQHYLAARRLLEKSKRPYRIVLLTGSLDEGVKRANRGKIYRGEADLVIGTHAL 389

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGDI 443
            ++ +++  L L++VDEQHRFGV QR +L +K     P VL MTATPIPRTL L+  GD+
Sbjct: 390 IEEKVEFANLGLIVVDEQHRFGVLQRFRLMKKPNQAEPDVLAMTATPIPRTLALSLYGDL 449

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           D+S I E P GR PI T  IP  + DEV + ++  ++EG++AY + P IE  K+  
Sbjct: 450 DLSVIDELPPGRTPIVTRRIPEEKADEVWQFVRAQVAEGRQAYVVYPVIEGSKDDQ 505



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 102/153 (66%), Gaps = 2/153 (1%)

Query: 497 ESNFRSVVERFNSLH--EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           ++  RS  E ++SL         + ++HGR+S  DK+  M  F+ G   +LI+TTVIEVG
Sbjct: 573 KTPLRSATEMYDSLRTGALAGLRLGLLHGRLSADDKDVTMKRFQQGEIDVLISTTVIEVG 632

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +AS++++E+AE FGLAQLHQLRGRVGRG   S C+L+    +S     RL+ +++T
Sbjct: 633 VDVPNASVMVVEHAERFGLAQLHQLRGRVGRGAAKSYCLLVESGRVSPQGEQRLAAMEHT 692

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           +DGF +AE DL+ R  GE  G +Q+G+P F +A
Sbjct: 693 QDGFELAEMDLQLRGPGEFFGTRQAGLPDFRVA 725


>gi|306992293|gb|ADN19263.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 408

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 155/413 (37%), Positives = 243/413 (58%), Gaps = 12/413 (2%)

Query: 144 IFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFP 200
           +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   +  + E+ +++ L +K   
Sbjct: 2   VLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEIEEFFDEEFLFEKGLM 61

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEG 259
            I  A   I+ P+      +   A+ R  Y EL   Q+AL L+++  K + GI    VE 
Sbjct: 62  DIKNALININFPQNE---AYLEQAKYRFKYQELFLLQMALFLVKRSVKGKKGIKFERVEL 118

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           K     L  +PF  T +Q   +K+I+ DM+    M R++QGDVGSGKT+VA  +M  AV+
Sbjct: 119 K---PFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQGDVGSGKTVVAACSMYIAVK 175

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  +++++ LE+I +G   I+
Sbjct: 176 NGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKKEVLEKIKNGDYDIV 235

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHAL +D + +  L L I DEQHRFGV+QR  LT+K   P VL+MTATPIPRTL L  
Sbjct: 236 VGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENPDVLVMTATPIPRTLALIL 295

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
            GD+DIS I + P+GRK +KT +I  +   +  E     + +G++ Y +CP IEE  + N
Sbjct: 296 YGDLDISIIDQLPSGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQVYVVCPLIEESDKIN 355

Query: 500 FRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             S    +  +++     + + ++HG+M+D DKE VM+ F NG   +L++TTV
Sbjct: 356 AMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVNGKIDILVSTTV 408


>gi|295836314|ref|ZP_06823247.1| ATP-dependent DNA helicase RecG [Streptomyces sp. SPB74]
 gi|295825956|gb|EFG64571.1| ATP-dependent DNA helicase RecG [Streptomyces sp. SPB74]
          Length = 772

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 158/489 (32%), Positives = 252/489 (51%), Gaps = 43/489 (8%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100
           DLL ++P  + +R    +++E+  +  VT+   +++    +F   + +  ++ L DG+G 
Sbjct: 31  DLLHHYPRRYAERGELTRLAELPLDEHVTVVARVAEARVLTFNAGRGKRLEVTLTDGSGR 90

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVN------- 152
           + L+FF R     ++    G +    GK+     ++ + HP Y +     D         
Sbjct: 91  LQLVFFGRGVHKPQHDLLPGTRAMFAGKVSVFNRKLQLAHPAYELLAEESDAREAAGSWA 150

Query: 153 ------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
                 +P    + S     +VD       EAL  LP         L + +    + EA 
Sbjct: 151 SSLLPIYPATAKLESWKIAKAVDAVLPSASEALDPLP-------DSLREGRGLLPLPEAL 203

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKI 265
             IH P+   + E    AR+RL +DE    Q AL   R    +   +P       +    
Sbjct: 204 VKIHRPQSKAEVEA---ARDRLKWDEAFVLQTALARRRHADAQLPAVPRRPASDGLLTAF 260

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF+ T+ Q    ++I  D++  + M R+LQG+VGSGKT+VAL AM A V+AGGQAV
Sbjct: 261 DARLPFTLTEGQRKVSREIFDDLATDHPMHRLLQGEVGSGKTMVALRAMLAVVDAGGQAV 320

Query: 326 IMAPIGILAQQHYEFIKKYTQNT-----------QIIVEIITGNMPQAHRRKALERIAHG 374
           ++AP  +LAQQH+  I +   +               V ++TG+M  A RRK L  +  G
Sbjct: 321 MLAPTEVLAQQHHRSITEMMGDLASGGTLGAAEHATGVVLLTGSMGAAARRKVLLDLVTG 380

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPR 433
           +A I+IGTHAL +D ++++ L LV+VDEQHRFGV+QR  L  K A  PH+L+MTATPIPR
Sbjct: 381 EAGIVIGTHALIEDVVKFHDLGLVVVDEQHRFGVEQRDALRSKGARPPHLLVMTATPIPR 440

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWIC 489
           T+ +T  GD++ S + + PAGR PI T ++P       +    ER++   + G +AY +C
Sbjct: 441 TVAMTVFGDLETSVLDQLPAGRSPIATHVVPAQDKPHFLARAWERVREEAAAGHQAYVVC 500

Query: 490 PQIEEKKES 498
           P+I +++E+
Sbjct: 501 PRIGDEEET 509



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 100/162 (61%), Gaps = 4/162 (2%)

Query: 518 IAIIHGRM---SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           I I+HGRM       K++VM  F      +L+ATTVIEVG++V +A+ ++I +A+ FG++
Sbjct: 588 IGILHGRMVPDGPDGKDAVMRRFAAAELDVLVATTVIEVGVNVPNATAMVIMDADRFGVS 647

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG     C+L+   P +  +  RL  +  T DGF ++  DL+QR+EG++L
Sbjct: 648 QLHQLRGRVGRGSAPGLCLLVTDMPEASPARARLGAVAATLDGFELSRVDLEQRREGDVL 707

Query: 635 GIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTS 675
           G  QSG+   L     + D  ++  AR++A  ++  DP L +
Sbjct: 708 GQAQSGVRSSLRMLAVIEDEQIIAEAREEATAVVAADPALEA 749


>gi|257413332|ref|ZP_05591609.1| ATP-dependent DNA helicase RecG [Roseburia intestinalis L1-82]
 gi|257203890|gb|EEV02175.1| ATP-dependent DNA helicase RecG [Roseburia intestinalis L1-82]
          Length = 550

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 171/537 (31%), Positives = 260/537 (48%), Gaps = 26/537 (4%)

Query: 11  APLSTFRGVGKKYSLFLSKI--INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +PL   +GVG K      KI     G        D+L ++P ++I       + E+ +  
Sbjct: 5   SPLREIKGVGAKTEELFHKIGVYTVG--------DILLHYPRTYIQYPQAKHVDEVLDGE 56

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              + G I++    +  +     +      G    L +YR   M KN    G      GK
Sbjct: 57  QAAVLGRITRTPVVRKVRTMQITVTTISEMGASLELVWYRMPYM-KNNLKVGSTYIFYGK 115

Query: 129 IKKLKNRIIMVHPHYI----FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           + K   R++M          + + + V  P    VY+L  GLS +L  K +  AL    +
Sbjct: 116 VNKKNGRLVMEQAAMFTEEQYASMEQVFLP----VYTLTNGLSNNLVTKTVRAALGDEHL 171

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             +++   + +K        A   IH P   +D E    AR RL +DE     +++   +
Sbjct: 172 FMDYLPHAIREKYGLCEYNYAIRQIHFP---EDMETLITARRRLVFDEFFLFILSMQYQK 228

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           ++  KE    +  E     +++  +P+  T +Q+ A+ D+ +DM  +  M R++QGDVGS
Sbjct: 229 EKHVKEKNEFVFAEDDFTDELIERLPYELTNAQKKALADVKRDMRSETVMQRLIQGDVGS 288

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQA 362
           GKT+VA +AMA     G Q+ IMAP  +LA+QHYE  +   +     I + ++TG+M   
Sbjct: 289 GKTIVAFLAMADTAHNGYQSAIMAPTEVLARQHYESYQSMCEQFGLHIPIVLLTGSMTAK 348

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R+A E +      +IIGTHAL Q+   Y  L LVI DEQHRFGV+QR     K T PH
Sbjct: 349 QKRRAYEALEVYSNAMIIGTHALIQEKAIYQNLALVITDEQHRFGVRQRETFAGKGTEPH 408

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++      +    ++  + EG
Sbjct: 409 VLVMSATPIPRTLAIIIYGDLDISVIDEVPAKRLPIKNCVVDQRYRPKAYAFIEHEIREG 468

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSF 537
            +AY ICP +EE +     +V +    L E     I I  +HG+M    K  +MD F
Sbjct: 469 HQAYVICPLVEESENMEAENVTDYAKRLREELPEDIVIGVLHGQMKAEQKNKIMDQF 525


>gi|242066222|ref|XP_002454400.1| hypothetical protein SORBIDRAFT_04g030170 [Sorghum bicolor]
 gi|241934231|gb|EES07376.1| hypothetical protein SORBIDRAFT_04g030170 [Sorghum bicolor]
          Length = 409

 Score =  254 bits (648), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 146/388 (37%), Positives = 221/388 (56%), Gaps = 35/388 (9%)

Query: 318 VEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           V +G QA  M P  +LA QHYE     ++K+  + +  + ++TG+      R     +  
Sbjct: 4   VNSGFQAAFMVPTEVLAVQHYEHLTSLLEKFDGDEKPNIALLTGSTSTRESRIIRNGLKT 63

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--------------- 418
           G+  ++IGTH+L  D   +  L + ++DEQ RFGV QR +   K                
Sbjct: 64  GEIAMVIGTHSLIADKTDFSSLRISVIDEQQRFGVVQRGRFNSKLYTSSSKLSDENTSSD 123

Query: 419 --------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI-- 468
                    APHVL M+ATPIPRTL L   GD+ +++IT+ P GR+PI+T+ +  N +  
Sbjct: 124 ETSDSETFMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRQPIETLALEGNDVGF 183

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           + V + ++  L +G K Y + P I+E ++    R+    F+S+ + F      ++HGRM 
Sbjct: 184 ETVFQMMRDELLDGGKVYLVYPIIDESEQLPQLRAATAEFDSIKKKFEGYPCGLLHGRMR 243

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +KE  + SF++G  ++L++T VIE+G+DV DAS++I+ NAE FG+AQLHQLRGRVGRG
Sbjct: 244 SNEKEEALSSFRSGETRILLSTQVIEIGVDVPDASMMIVMNAERFGIAQLHQLRGRVGRG 303

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFL 645
           E  S CI L     + ++  RL VL+ + DGF +A  DL  R  G +LG KQSG +P+F 
Sbjct: 304 ERKSRCIFLAS---TLSTLPRLKVLEKSSDGFYLANADLLLRGPGNLLGKKQSGHLPEFP 360

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDL 673
           IA+ E+  S+L+ A   A  +L    DL
Sbjct: 361 IARLEIDGSILQEAHLAALKVLVASNDL 388


>gi|333024198|ref|ZP_08452262.1| putative ATP-dependent DNA helicase RecG [Streptomyces sp. Tu6071]
 gi|332744050|gb|EGJ74491.1| putative ATP-dependent DNA helicase RecG [Streptomyces sp. Tu6071]
          Length = 775

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 158/490 (32%), Positives = 257/490 (52%), Gaps = 45/490 (9%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100
           DLL ++P  + +R    +++E+  +  VT+   ++     +F   + +  ++ + DG+G 
Sbjct: 31  DLLHHYPRRYAERGELTRLAELPLDEHVTVVARVADARVHTFNAGRGKRLEVTITDGSGR 90

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVN------- 152
           + L+FF R     ++    G +    GK+     ++ + HP Y +     D         
Sbjct: 91  LQLVFFGRGVHKPQHDLLPGTRAMFAGKVSVFNRKLQLAHPAYELLAEESDAREAAGTWA 150

Query: 153 ------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
                 +P    + S     +VD       EAL  LP         L + +    + EA 
Sbjct: 151 SSLLPIYPATAKLESWKIAKAVDAVLPSANEALDPLP-------DSLREGRGLLPLPEAL 203

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIAQK 264
             IH P+   + E    AR+RL +DE    Q AL   R    +   +P     +G +A  
Sbjct: 204 VKIHRPQSKTEVEA---ARDRLKWDEAFVLQTALARRRHADAQLPAVPRCPAPDGLLAAF 260

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
             R +PF+ T+ Q+   ++I  D++  + M R+LQG+VGSGKT+VAL AM A V+AGGQA
Sbjct: 261 DAR-LPFTLTEGQQKVSREIFDDLATDHPMHRLLQGEVGSGKTMVALRAMLAVVDAGGQA 319

Query: 325 VIMAPIGILAQQHYEFIKKYTQNT-----------QIIVEIITGNMPQAHRRKALERIAH 373
            ++AP  +LAQQH+  I +   +               V ++TG++  A RRKAL  +  
Sbjct: 320 AMLAPTEVLAQQHHRSITEMMGDLASGGTLGAAEHATGVVLLTGSLGAAARRKALLDLVT 379

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIP 432
           G+A ++IGTHAL +D ++++ L LV+VDEQHRFGV+QR  L  K A  PH+L+MTATPIP
Sbjct: 380 GEAGVVIGTHALIEDVVKFHDLGLVVVDEQHRFGVEQRDALRSKGAQPPHLLVMTATPIP 439

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWI 488
           RT+ +T  GD++ S + + PAGR PI T ++P       +    ER++  ++ G +AY +
Sbjct: 440 RTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAQDKPHFLARAWERVREEVAAGHQAYVV 499

Query: 489 CPQIEEKKES 498
           CP+I +++E+
Sbjct: 500 CPRIGDEEET 509



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 102/162 (62%), Gaps = 4/162 (2%)

Query: 518 IAIIHGRMSDID---KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           I I+HGRM+      K++VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++
Sbjct: 591 IGILHGRMAPDGPDGKDAVMRRFAAGELDVLVATTVIEVGVNVPNATAMVIMDADRFGVS 650

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG     C+L+   P +  +  RL  +  T DGF ++  DL+QR+EG++L
Sbjct: 651 QLHQLRGRVGRGSAPGLCLLVTDMPEASPARARLGAVAATLDGFELSRVDLEQRREGDVL 710

Query: 635 GIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTS 675
           G  QSG+   L     + D  ++  AR++A  ++  DP L +
Sbjct: 711 GQAQSGVRSSLRMLAVIEDEQIIAEAREEATAVVAADPALEA 752


>gi|160883181|ref|ZP_02064184.1| hypothetical protein BACOVA_01150 [Bacteroides ovatus ATCC 8483]
 gi|156111406|gb|EDO13151.1| hypothetical protein BACOVA_01150 [Bacteroides ovatus ATCC 8483]
          Length = 327

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 134/301 (44%), Positives = 197/301 (65%), Gaps = 3/301 (0%)

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLV 436
           I+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L  K    PHVL+MTATPIPRTL 
Sbjct: 3   ILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSKNVQPPHVLVMTATPIPRTLA 62

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +T  GD+D+S I E P GRKPI T+    NR + +   ++  + EG++ Y + P I+E +
Sbjct: 63  MTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRSVRKQIDEGRQVYIVYPLIKESE 122

Query: 497 ESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           + + +++ E +  + E F   ++  +HG+M   +K+  M  F +G  ++++ATTVIEVG+
Sbjct: 123 KIDLKNLEEGYQHILEEFPKCTVCKVHGKMKPAEKDEQMQLFVSGKAQIMVATTVIEVGV 182

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ +  L++++  RL ++  T 
Sbjct: 183 NVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVTNYKLTEDTRKRLEIMVRTN 242

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           DGF IAE DLK R  G++ G +QSG+     IA       LL+  R  A+ I+ QDP   
Sbjct: 243 DGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRDGQLLQYVRAIAESIVEQDPAAQ 302

Query: 675 S 675
           S
Sbjct: 303 S 303


>gi|212716752|ref|ZP_03324880.1| hypothetical protein BIFCAT_01689 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660456|gb|EEB21031.1| hypothetical protein BIFCAT_01689 [Bifidobacterium catenulatum DSM
           16992]
          Length = 912

 Score =  253 bits (647), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 148/377 (39%), Positives = 207/377 (54%), Gaps = 48/377 (12%)

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
           T++ +I V ++TG M  A RR+ L   A G   I++ THA F  S Q   L L ++DEQH
Sbjct: 512 TKDGEIPVFLLTGGMRLAERRRILAAAASGMPCIVVATHAAFSKSFQAPNLTLAVIDEQH 571

Query: 405 RFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           RFGV+QR  L  K ATAPH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T ++
Sbjct: 572 RFGVEQRESLNSKGATAPHLLVMTATPIPRTAAMTWFGDLDISALTELPGGRKPIRTFVV 631

Query: 464 PINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKE-----------SNFRS------- 502
           P +    + E+   ++  +  G+ AY +CP+I++  E           SN ++       
Sbjct: 632 PESNASLMSEMFALIRKRIDAGELAYVVCPRIDDDSENADDVLAESATSNSKTTGSPIPA 691

Query: 503 -------------------------VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
                                    +VER  SL +      A + GR  D  K  VM  F
Sbjct: 692 FDEAYDLGEDDEQRAQRPPLHSVAEIVERLQSLPQFKGIRFATLTGRDDDTTKSQVMADF 751

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + G   +L+ATTVIEVG+DV  AS I+I +A+ +GL+QLHQLRGRVGRG   S   L+  
Sbjct: 752 EAGITPILVATTVIEVGVDVAKASCIVIFDADRYGLSQLHQLRGRVGRGGTDSGAFLISR 811

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLL 656
            P   ++  RL V++ T DG  IA+ DL+ R  G++LG  QSG    L     + D  ++
Sbjct: 812 APADSDAARRLDVIQGTLDGAEIAQADLEFRGAGDVLGDAQSGGKTGLKLLRVVKDVKII 871

Query: 657 EIARKDAKHILTQDPDL 673
           E AR +A  ++  DPDL
Sbjct: 872 EQARAEATQLVAADPDL 888



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 98/179 (54%), Gaps = 8/179 (4%)

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            +P+ I +D  +K      AEAF  IH+P   K+F+    A + L Y+E L  Q AL+  
Sbjct: 259 AIPDIIPEDFREKYGLMHRAEAFMAIHDPVDRKNFDN---ALQTLRYEEALICQTALVKT 315

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   +K      +V  ++    + ++PF+ T  Q   I DI  DM++   M R+LQG+VG
Sbjct: 316 RDASRKNRATACSVT-RLKDDFIASLPFALTSGQRQVIADISADMTRDYPMQRLLQGEVG 374

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVEIITGN 358
           SGKT+VA+ AM  AV +GGQAV++AP  +LA+QHY    + + K T         I GN
Sbjct: 375 SGKTVVAVAAMMQAVGSGGQAVLVAPTQVLAEQHYASISKMVAKLTDADDKTASAIQGN 433


>gi|318056542|ref|ZP_07975265.1| ATP-dependent DNA helicase RecG [Streptomyces sp. SA3_actG]
 gi|318076716|ref|ZP_07984048.1| ATP-dependent DNA helicase RecG [Streptomyces sp. SA3_actF]
          Length = 778

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 156/489 (31%), Positives = 252/489 (51%), Gaps = 43/489 (8%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100
           DLL ++P  + +R    +++E+  +  VT+   ++     +F   + +  ++ + DG+G 
Sbjct: 31  DLLHHYPRRYAERGELTRLAELPLDEHVTVVARVADARVHTFNAGRGKRLEVTITDGSGR 90

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVN------- 152
           + L+FF R     ++    G +    GK+     ++ + HP Y +     D         
Sbjct: 91  LQLVFFGRGVHKPQHDLLPGTRAMFAGKVSVFNRKLQLAHPAYELLAEESDAREAAGTWA 150

Query: 153 ------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
                 +P    + S     +VD       EAL  LP         L + +    + EA 
Sbjct: 151 SSLLPIYPATAKLESWKIAKAVDAVLPSANEALDPLP-------DSLREGRGLLPLPEAL 203

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKI 265
             IH P+   + E    AR+RL +DE    Q AL   R    +   +P       +    
Sbjct: 204 VKIHRPQSKAEVEA---ARDRLKWDEAFVLQTALARRRHADAQLPAVPRRPAPDGLLTAF 260

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF+ T+ Q+   ++I  D++  + M R+LQG+VGSGKT+VAL AM A V+AGGQA 
Sbjct: 261 DARLPFTLTEGQQKVSREIFDDLATDHPMHRLLQGEVGSGKTMVALRAMLAVVDAGGQAA 320

Query: 326 IMAPIGILAQQHYEFIKKYTQNT-----------QIIVEIITGNMPQAHRRKALERIAHG 374
           ++AP  +LAQQH+  I +   +               V ++TG+M  A RRK L  +  G
Sbjct: 321 MLAPTEVLAQQHHRSITEMMGDLASGGTLGAAEHATGVVLLTGSMGAAARRKVLLDLVTG 380

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPR 433
           +A I+IGTHAL +D ++++ L LV+VDEQHRFGV+QR  L  K A  PH+L+MTATPIPR
Sbjct: 381 EAGIVIGTHALIEDVVKFHDLGLVVVDEQHRFGVEQRDALRSKGAQPPHLLVMTATPIPR 440

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWIC 489
           T+ +T  GD++ S + + PAGR PI T ++P       +    ER++  ++ G +AY +C
Sbjct: 441 TVAMTVFGDLETSVLDQLPAGRSPIATHVVPAQDKPHFLARAWERVREEVAAGHQAYVVC 500

Query: 490 PQIEEKKES 498
           P+I +++E+
Sbjct: 501 PRIGDEEET 509



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 102/162 (62%), Gaps = 4/162 (2%)

Query: 518 IAIIHGRMSDID---KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           I I+HGRM+      K++VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++
Sbjct: 594 IGILHGRMAPDGPDGKDAVMRRFAAGELDVLVATTVIEVGVNVPNATAMVIMDADRFGVS 653

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG     C+L+   P +  +  RL  +  T DGF ++  DL+QR+EG++L
Sbjct: 654 QLHQLRGRVGRGSAPGLCLLVTDMPEASPARARLGAVAATLDGFELSRVDLEQRREGDVL 713

Query: 635 GIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTS 675
           G  QSG+   L     + D  ++  AR++A  ++  DP L +
Sbjct: 714 GQAQSGVRSSLRMLAVIEDEQIIAEAREEATAVVAADPALEA 755


>gi|302522130|ref|ZP_07274472.1| ATP-dependent DNA helicase RecG [Streptomyces sp. SPB78]
 gi|302431025|gb|EFL02841.1| ATP-dependent DNA helicase RecG [Streptomyces sp. SPB78]
          Length = 768

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 156/489 (31%), Positives = 252/489 (51%), Gaps = 43/489 (8%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGE 100
           DLL ++P  + +R    +++E+  +  VT+   ++     +F   + +  ++ + DG+G 
Sbjct: 21  DLLHHYPRRYAERGELTRLAELPLDEHVTVVARVADARVHTFNAGRGKRLEVTITDGSGR 80

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVN------- 152
           + L+FF R     ++    G +    GK+     ++ + HP Y +     D         
Sbjct: 81  LQLVFFGRGVHKPQHDLLPGTRAMFAGKVSVFNRKLQLAHPAYELLAEESDAREAAGTWA 140

Query: 153 ------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
                 +P    + S     +VD       EAL  LP         L + +    + EA 
Sbjct: 141 SSLLPIYPATAKLESWKIAKAVDAVLPSANEALDPLP-------DSLREGRGLLPLPEAL 193

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKI 265
             IH P+   + E    AR+RL +DE    Q AL   R    +   +P       +    
Sbjct: 194 VKIHRPQSKAEVEA---ARDRLKWDEAFVLQTALARRRHADAQLPAVPRRPAPDGLLTAF 250

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PF+ T+ Q+   ++I  D++  + M R+LQG+VGSGKT+VAL AM A V+AGGQA 
Sbjct: 251 DARLPFTLTEGQQKVSREIFDDLATDHPMHRLLQGEVGSGKTMVALRAMLAVVDAGGQAA 310

Query: 326 IMAPIGILAQQHYEFIKKYTQNT-----------QIIVEIITGNMPQAHRRKALERIAHG 374
           ++AP  +LAQQH+  I +   +               V ++TG+M  A RRK L  +  G
Sbjct: 311 MLAPTEVLAQQHHRSITEMMGDLASGGTLGAAEHATGVVLLTGSMGAAARRKVLLDLVTG 370

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPR 433
           +A I+IGTHAL +D ++++ L LV+VDEQHRFGV+QR  L  K A  PH+L+MTATPIPR
Sbjct: 371 EAGIVIGTHALIEDVVKFHDLGLVVVDEQHRFGVEQRDALRSKGAQPPHLLVMTATPIPR 430

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWIC 489
           T+ +T  GD++ S + + PAGR PI T ++P       +    ER++  ++ G +AY +C
Sbjct: 431 TVAMTVFGDLETSVLDQLPAGRSPIATHVVPAQDKPHFLARAWERVREEVAAGHQAYVVC 490

Query: 490 PQIEEKKES 498
           P+I +++E+
Sbjct: 491 PRIGDEEET 499



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 102/162 (62%), Gaps = 4/162 (2%)

Query: 518 IAIIHGRMSDID---KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           I I+HGRM+      K++VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++
Sbjct: 584 IGILHGRMAPDGPDGKDAVMRRFAAGELDVLVATTVIEVGVNVPNATAMVIMDADRFGVS 643

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG     C+L+   P +  +  RL  +  T DGF ++  DL+QR+EG++L
Sbjct: 644 QLHQLRGRVGRGSAPGLCLLVTDMPEASPARARLGAVAATLDGFELSRVDLEQRREGDVL 703

Query: 635 GIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTS 675
           G  QSG+   L     + D  ++  AR++A  ++  DP L +
Sbjct: 704 GQAQSGVRSSLRMLAVIEDEQIIAEAREEATAVVAADPALEA 745


>gi|225351188|ref|ZP_03742211.1| hypothetical protein BIFPSEUDO_02778 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158644|gb|EEG71886.1| hypothetical protein BIFPSEUDO_02778 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 896

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 147/377 (38%), Positives = 209/377 (55%), Gaps = 48/377 (12%)

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
           T++ +I V ++TG+M  A RR+ L   A G   I++ THA F  S Q   L L ++DEQH
Sbjct: 496 TKDGEIPVFLLTGSMRLAERRRVLAAAASGMPCIVVATHAAFSKSFQAPNLTLAVIDEQH 555

Query: 405 RFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           RFGV+QR  L  K +TAPH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T ++
Sbjct: 556 RFGVEQRESLNSKGSTAPHLLVMTATPIPRTAAMTWFGDLDISSLTELPGGRKPIRTFVV 615

Query: 464 PINR---IDEVIERLKVVLSEGKKAYWICPQIE--------------------------- 493
           P +    + E+   ++  +  G++AY +CP+I+                           
Sbjct: 616 PEDNASLMGEMFALIRKRIDAGERAYVVCPRIDADAEDADGALAASAASGSETAGSSAAA 675

Query: 494 -----EKKESNFR-----------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
                +  E + R            +VER  SL +      A + GR  D  K  VM  F
Sbjct: 676 FDDAYDLGEDDDRRAQRPPLHSVAEIVERLQSLPQFKGIRFATLTGRDDDTTKSQVMADF 735

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G   +L+ATTVIEVG+DV  AS I+I +A+ +GL+QLHQLRGRVGRG   S   L+  
Sbjct: 736 ESGITPILVATTVIEVGVDVAKASCIVIFDADRYGLSQLHQLRGRVGRGGTDSGAFLISR 795

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLL 656
            P   ++  RL V++ T DG  IA+ DL+ R  G++LG  QSG    L     + D  ++
Sbjct: 796 APADSDAARRLDVIQGTLDGAEIAQADLEFRGAGDVLGDAQSGGKSGLKLLRVVKDVKII 855

Query: 657 EIARKDAKHILTQDPDL 673
           E AR +A  ++ QDPDL
Sbjct: 856 EHARVEATRLVAQDPDL 872



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 4/158 (2%)

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            +P+ I +D  ++      AEAF  IH+P   K+F+    A + L Y+E L  Q AL+  
Sbjct: 259 AIPDIIPEDFREEYGLMHRAEAFMAIHDPVDRKNFD---NALQTLRYEEALICQTALVKS 315

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   +K        E ++    + ++PF+ T  Q+  I DI  DM+    M R+LQG+VG
Sbjct: 316 RDASRKSKATACP-ETRLKDDFIASLPFALTNGQQQVIADISADMAHDYPMQRLLQGEVG 374

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           SGKT+VA+ AM  AV +GGQAV++AP  +LA+QHY  I
Sbjct: 375 SGKTVVAVAAMMQAVGSGGQAVLVAPTQVLAEQHYASI 412


>gi|206900533|ref|YP_002251220.1| transcription-repair coupling factor [Dictyoglomus thermophilum
           H-6-12]
 gi|206739636|gb|ACI18694.1| transcription-repair coupling factor [Dictyoglomus thermophilum
           H-6-12]
          Length = 1070

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 156/414 (37%), Positives = 235/414 (56%), Gaps = 17/414 (4%)

Query: 235 AGQIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           A +IA  L++   ++E+  G   + +  + +++  + P+  T+ Q  A+K+I +DM  K 
Sbjct: 511 AKEIAEELLKVYAQRELTEGFAFSPDSPLQEELEASFPYVETEDQIKALKEIKRDMESKK 570

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R+L GDVG GKT +AL A   AV  G Q  I+ P  ILA QH++  ++  +   + V
Sbjct: 571 PMERVLIGDVGFGKTELALRASFKAVLDGKQVAILVPTTILAYQHWKVFRERLEVFPVNV 630

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
           EI++   P++ +++ +ERI  G+  IIIGTH + Q  +++  L L+IVDE+HRFGV Q+ 
Sbjct: 631 EILSRLKPKSEQKRIIERIRKGEIDIIIGTHRILQKDVEFKDLGLIIVDEEHRFGVLQKE 690

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
              +K     +L ++ATPIPRTL +   G    S +   P  R PI+T ++  N   E+I
Sbjct: 691 SFKKKYPHVDILYLSATPIPRTLSMVLSGIRQFSVLETPPENRLPIQTFVVEYN--PEII 748

Query: 473 -ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
            E ++  L  G + Y++C  IE         + E    L    T SIA  HG+M D +  
Sbjct: 749 QEGIRRELERGGQVYYVCNDIE-----RLEKIKEELTKLVPEATYSIA--HGKMDDEELT 801

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            VM +F +G   +LIATT+IE GIDV +A+ + +ENAEH GLAQL+QLRGR+GR  + + 
Sbjct: 802 EVMSNFYDGKIDVLIATTIIESGIDVPNANTLFVENAEHMGLAQLYQLRGRIGRSYKQAY 861

Query: 592 CILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
              L+ P   LS +S  RL  LK       G  +A  DL+ R  G+ILG +Q G
Sbjct: 862 AYFLHAPLKKLSLDSIKRLEALKEFSSLGSGLRLALRDLEIRGAGKILGKEQHG 915


>gi|126664951|ref|ZP_01735934.1| transcription-repair coupling protein Mfd [Marinobacter sp. ELB17]
 gi|126630321|gb|EBA00936.1| transcription-repair coupling protein Mfd [Marinobacter sp. ELB17]
          Length = 1169

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 156/432 (36%), Positives = 244/432 (56%), Gaps = 27/432 (6%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++ L      A ++  +  R++ +K  G   +   +  +      PF  T  QE 
Sbjct: 567 WNTAKKKALEKIRDTAAELLDVYARREARK--GFSFDNPQEAYRTFAAGFPFEETPDQEV 624

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+ +L+DM+ +  M R++ GDVG GKT VA+ A   A  +G Q  ++ P  +LAQQHYE
Sbjct: 625 AIQAVLEDMTSERPMDRLVCGDVGFGKTEVAMRAAFVATWSGKQVAVLVPTTLLAQQHYE 684

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    +T + +E+++     +   KALE + +G+A I+IGTH L Q +I++  L LVI
Sbjct: 685 SFRDRFSDTAVNIELLSRFRSGSQTNKALEAMENGKADIVIGTHKLLQGNIRFKNLGLVI 744

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DISKITEKPAGRKPI 458
           +DE+HRFGVQQ+ KL        +L +TATPIPRTL + ++G + D+S I   PA R  +
Sbjct: 745 IDEEHRFGVQQKEKLKALRAEVDMLNLTATPIPRTLNM-AMGHLRDLSIIATPPARRLSV 803

Query: 459 KTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEH 513
           KT    + + DE + + + +L E   G + Y++   +   EK  ++ R ++         
Sbjct: 804 KTF---VRQRDEPMVK-EAILREILRGGQVYFLHNNVTSIEKTAADLRQLIPE------- 852

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             + + + HG+M + D E +M  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGL
Sbjct: 853 --ARVGVAHGQMRERDLEQIMTDFYHKRFNVLVCTTIIETGIDVPTANTIIIERADKFGL 910

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           AQLHQLRGRVGR    +   LL  PP  +S ++  RL  +   +D   GF++A +DL+ R
Sbjct: 911 AQLHQLRGRVGRSHHQAYAYLLTPPPKAISSDAKKRLEAISEAQDLGAGFMLATQDLEIR 970

Query: 629 KEGEILGIKQSG 640
             GE+LG +QSG
Sbjct: 971 GAGELLGEEQSG 982


>gi|85059053|ref|YP_454755.1| transcription-repair coupling factor [Sodalis glossinidius str.
           'morsitans']
 gi|84779573|dbj|BAE74350.1| transcription-repair coupling factor [Sodalis glossinidius str.
           'morsitans']
          Length = 1150

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/388 (38%), Positives = 220/388 (56%), Gaps = 23/388 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q      PF PT  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A+E   
Sbjct: 592 QLFCEGFPFEPTVDQSQAINAVLSDMCQPLSMDRLICGDVGFGKTEVAMRAAFLAIENHK 651

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    N  + +E+I+       + + LE+ A G+  I+IGT
Sbjct: 652 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMISRFRSARDQAQVLEQTAEGKVDILIGT 711

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++++ L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 712 HKLLQSDVKWHDLGLLIVDEEHRFGVRHKERIKAMRAGVDILTLTATPIPRTLNMAMSGM 771

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKE 497
            D+S I   PA R  +KT    + + D ++ R + +L E   G + Y++   +E  EK  
Sbjct: 772 RDLSIIATPPARRLTVKTF---VRQYDALVVR-EAILREVLRGGQVYYLYNDVENIEKAA 827

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
               ++V           + IAI HG++ + + E VM+ F +    +L+ TT+IE GID+
Sbjct: 828 RCLETLVPE---------ARIAIGHGQLRERELERVMNDFHHQRFNVLVCTTIIETGIDI 878

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE 615
            +A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  PP  LS++++ RL  + + E
Sbjct: 879 ANANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALSQDAHKRLEAIASLE 938

Query: 616 D---GFLIAEEDLKQRKEGEILGIKQSG 640
           D   GF +A  DL+ R  GE+LG  QSG
Sbjct: 939 DLGAGFALATHDLEIRGAGELLGEDQSG 966


>gi|115448235|ref|NP_001047897.1| Os02g0710800 [Oryza sativa Japonica Group]
 gi|41052646|dbj|BAD07494.1| ATP-dependent DNA helicase RECG-like [Oryza sativa Japonica Group]
 gi|41052862|dbj|BAD07776.1| ATP-dependent DNA helicase RECG-like [Oryza sativa Japonica Group]
 gi|113537428|dbj|BAF09811.1| Os02g0710800 [Oryza sativa Japonica Group]
 gi|215764974|dbj|BAG86671.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 410

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 143/399 (35%), Positives = 224/399 (56%), Gaps = 36/399 (9%)

Query: 318 VEAGGQAVIMAPIGILAQQHYE----FIKKYTQN-TQIIVEIITGNMPQAHRRKALERIA 372
           + +G QA  M P  +LA QHYE     ++K+  +  +  + ++TG+      R     + 
Sbjct: 4   ISSGFQAAFMVPTEVLALQHYEHLTSLLEKFDGDECKPNIALLTGSTSTRESRIIRNGLK 63

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-------------- 418
            G+  ++IGTH+L  D  ++  L + ++DEQ RFGV QR +   K               
Sbjct: 64  TGEIAMVIGTHSLIGDKTEFSALRISVIDEQQRFGVVQRGRFNSKLYTPSTKSSDDDTIS 123

Query: 419 ---------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467
                     APHVL M+ATPIPRTL L   GD+ +++IT+ P GR+PI+T+ +  N   
Sbjct: 124 DENSASEIFMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRQPIETLALEGNDAG 183

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            + V + +   L +G K Y + P IEE ++     +    F+S+ + F      ++HGRM
Sbjct: 184 FESVFQMMSDELVDGGKVYLVYPIIEESEQLPQLHAAKAEFDSIKQKFEGYPCGLLHGRM 243

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +K+  + SF++G  ++L++T VIE+G+DV DAS++++ NAE FG++QLHQLRGRVGR
Sbjct: 244 RSDEKDGALSSFRSGETRILLSTQVIEIGVDVPDASMMVVMNAERFGMSQLHQLRGRVGR 303

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKF 644
           GE  S C+ L   P   ++  RL VL+ + DGF +A  DL  R  G++LG KQSG +P+F
Sbjct: 304 GERKSRCVFLCSTP---SALPRLKVLEKSSDGFYLANADLLLRGPGDLLGKKQSGHLPEF 360

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            IA+ E+  S+L+ A   A ++L    DL    G  + +
Sbjct: 361 PIARLEIDGSILQEAHLAALNVLGTSNDLAQFPGLKVEL 399


>gi|313889521|ref|ZP_07823167.1| transcription-repair coupling factor [Streptococcus pseudoporcinus
            SPIN 20026]
 gi|313122133|gb|EFR45226.1| transcription-repair coupling factor [Streptococcus pseudoporcinus
            SPIN 20026]
          Length = 1166

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 187/547 (34%), Positives = 289/547 (52%), Gaps = 38/547 (6%)

Query: 130  KKLKNRIIMVHPHYIFHNSQDVN-FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
            ++LKN   +V   Y+ HN   +  F  IE +     G+  D +  I  +   R+ +  E 
Sbjct: 480  ERLKNYNELVKGDYVVHNVHGIGRFLGIETIQ--IQGIHRD-YVTIQYQNSDRISLPVEQ 536

Query: 189  IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
            IE  L +  S        N +++ R  K  +  S   E +A D+LL     L   R Q K
Sbjct: 537  IES-LSKYVSADGKEPKINKLNDGRFQKTKQKVSKQVEDIA-DDLLR----LYAERSQLK 590

Query: 249  KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
               G   + + ++      + PF  T+ Q  +I++I +DM  +  M R+L GDVG GKT 
Sbjct: 591  ---GFQFSPDDELQASFDNDFPFVETEDQLRSIQEIKKDMESQRPMDRLLVGDVGFGKTE 647

Query: 309  VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
            VA+ A   AV+   Q  I+ P  +LAQQHY+  ++  +N  I V++++    +  +  +L
Sbjct: 648  VAMRAAFKAVKDHKQVAILVPTTVLAQQHYDNFRERFENYPIKVDVLSRFRSKKEQNTSL 707

Query: 369  ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            E++A GQ  IIIGTH L    +Q+  L L+++DE+ RFGV+ + KL +      VL +TA
Sbjct: 708  EKLAKGQVDIIIGTHRLLSKDVQFSDLGLIVIDEEQRFGVKHKEKLKELKNKVDVLTLTA 767

Query: 429  TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAY 486
            TPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R    +  G + +
Sbjct: 768  TPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPSLVREAILR---EMDRGGQVF 824

Query: 487  WICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ++  +++  +KK S  + +V           ++I  +HG+MS+I  E+ +  F NG   +
Sbjct: 825  YVYNKVDTIDKKVSQLQELVPE---------AAIGFVHGQMSEIQLENTLIDFINGDYDV 875

Query: 545  LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSK 602
            L+ATT+IE G+D+ + + + +ENA+H GL+ L+QLRGRVGR   I+   L+Y P   LS+
Sbjct: 876  LVATTIIETGVDISNVNTLFVENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLSE 935

Query: 603  NSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE-- 657
             S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E++  LLE  
Sbjct: 936  ISDKRLEAIKGFTELGSGFKIAMRDLAIRGAGNILGASQSGFIDSV--GFEMYSQLLEEA 993

Query: 658  IARKDAK 664
            IA K  K
Sbjct: 994  IANKQGK 1000


>gi|307106672|gb|EFN54917.1| hypothetical protein CHLNCDRAFT_134628 [Chlorella variabilis]
          Length = 786

 Score =  247 bits (631), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 184/494 (37%), Positives = 256/494 (51%), Gaps = 75/494 (15%)

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP W+ +    +   P    A   +H P+ A   E     R+RLA+ ELLA Q+ LLLMR
Sbjct: 334 LPSWMREQYQLQPLLP----ALRSVHQPKNAVLLE---EGRQRLAFQELLALQLKLLLMR 386

Query: 245 KQ-FKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
              +    G  + V + K+ Q  L  +PF  T  Q+ A+ +IL  M     M  +LQG+V
Sbjct: 387 SMAWAGTGGGGVEVSDSKLLQLALEALPFEMTNGQQVALDNILGQMEGWPPMQCLLQGEV 446

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE---IITGNM 359
           G GKT+VA +A+ AAV +G Q  IMAP  ILA+QHY  ++   Q+         I+TG++
Sbjct: 447 GCGKTIVACLALLAAVGSGYQGAIMAPTEILAEQHYRNLQALVQDINRKAGKDGIVTGSV 506

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R +  E +A G   I +GTHAL  DS  + +L L IVDEQH+FGV+QR +L  KA+
Sbjct: 507 RGKPRAQVDEGLASGNIDIAVGTHALISDSTHFQRLGLAIVDEQHKFGVEQRGRLLAKAS 566

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PHVL MTATPIPRT  L   G++    I + PAGR P+ T ++     D+  ER +  
Sbjct: 567 PVPHVLHMTATPIPRTQALIDHGNMTQVLIQQLPAGRTPVLTRMLQ----DDSPERQQ-- 620

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            +E K A            S    +VE     H+       ++HG+M    K++V+  FK
Sbjct: 621 -AEVKAAA-----------SELDRLVEEGVFAHQ----DCGLLHGQMPPDQKDAVLQQFK 664

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  K+L++TTV+EVG+DV  A++++IE+AE FG AQLHQLRGRV               
Sbjct: 665 QGAIKVLVSTTVVEVGVDVPQATVMVIEHAERFGFAQLHQLRGRV--------------- 709

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
                       L N  +GF +AE DL+ R  GE             +AQ      LLE 
Sbjct: 710 ------------LVNCNNGFAVAECDLELRGAGE-------------VAQIPADRELLEQ 744

Query: 659 ARKDAKHILTQDPD 672
           AR+ A  +L + PD
Sbjct: 745 ARQAAIDLLQRQPD 758


>gi|319896952|ref|YP_004135147.1| transcription-repair coupling factor [Haemophilus influenzae F3031]
 gi|317432456|emb|CBY80811.1| transcription-repair coupling factor [Haemophilus influenzae F3031]
          Length = 1146

 Score =  247 bits (631), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFAATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++   
Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ LE +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K+ Q   
Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D+++ R + +L
Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L+N ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967


>gi|301169996|emb|CBW29600.1| transcription-repair coupling factor [Haemophilus influenzae 10810]
          Length = 1146

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFAATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++   
Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ LE +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K+ Q   
Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D+++ R + +L
Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L+N ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967


>gi|145642248|ref|ZP_01797814.1| transcription-repair coupling factor [Haemophilus influenzae R3021]
 gi|145273053|gb|EDK12933.1| transcription-repair coupling factor [Haemophilus influenzae
           22.4-21]
          Length = 1160

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 584 LLDVYAQREAKKGFAFKYDREEFQQFAATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 643

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++   
Sbjct: 644 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 703

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ LE +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K+ Q   
Sbjct: 704 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 763

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D+++ R + +L
Sbjct: 764 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 819

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 820 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 872

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 873 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 932

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L+N ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 933 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 981


>gi|309805485|ref|ZP_07699530.1| helicase C-terminal domain protein [Lactobacillus iners LactinV
           09V1-c]
 gi|308165136|gb|EFO67374.1| helicase C-terminal domain protein [Lactobacillus iners LactinV
           09V1-c]
          Length = 328

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 127/330 (38%), Positives = 208/330 (63%), Gaps = 5/330 (1%)

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++K    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L  K     +
Sbjct: 3   KKKIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGKMVDI 62

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++  +   L +G 
Sbjct: 63  LAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQLEQGF 122

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I E  + + ++    +  +  +F S  +A++HG+M+   K  +MD+F NG+ 
Sbjct: 123 QIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMASSQKSDIMDAFINGSI 182

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S CI +  P  + 
Sbjct: 183 KILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYCIFVSDPK-TD 241

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           ++  RL ++   +DGF +A EDLK R EG++ G  QSG+P+F +     + ++   A+K+
Sbjct: 242 SAKKRLKIISTCDDGFALAREDLKLRGEGDLFGQAQSGIPQFKLGDVINNYNIFTTAQKE 301

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           +K ++ Q+P+L    G+    L  L +Y++
Sbjct: 302 SKILVHQNPELV---GEEYDFLKLLMEYDD 328


>gi|294668401|ref|ZP_06733504.1| hypothetical protein NEIELOOT_00319 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309719|gb|EFE50962.1| hypothetical protein NEIELOOT_00319 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 295

 Score =  247 bits (630), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 129/278 (46%), Positives = 174/278 (62%), Gaps = 1/278 (0%)

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++   D+D+S I E P GR P
Sbjct: 1   MIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTP 60

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           IKT ++   R  EV   +  +  +G++AYW+CP IEE +    ++  E    L       
Sbjct: 61  IKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEESETLQLQTATETLEQLQAALPEL 120

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+DV +A++++IE+AE  GLAQL
Sbjct: 121 NIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMGLAQL 180

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG   S C+LL+  PLS+ +  RL V+    DGF IA +DL  R  GE LG 
Sbjct: 181 HQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGA 240

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           +QSG+P    A  E    LLE AR+ A  ++ Q+P++ 
Sbjct: 241 RQSGVPMLRFANLEEDLYLLEQAREIAPMLIEQNPEIV 278


>gi|237808985|ref|YP_002893425.1| transcription-repair coupling factor [Tolumonas auensis DSM 9187]
 gi|237501246|gb|ACQ93839.1| transcription-repair coupling factor [Tolumonas auensis DSM 9187]
          Length = 1150

 Score =  247 bits (630), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 152/397 (38%), Positives = 224/397 (56%), Gaps = 19/397 (4%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G+    + +   K     PF  T  Q +AI  +L DM Q   M R++ GDVG GKT VA+
Sbjct: 583 GLAFRHDKQAYSKFAAGFPFEETPDQLNAINSVLGDMCQAKAMDRLVCGDVGFGKTEVAM 642

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV AG Q  ++ P  +LAQQHYE  +    N  + +E+++       ++ A+E +
Sbjct: 643 RATFVAVHAGKQVAVLVPTTLLAQQHYENFRDRFANWPVNIEVMSRFKSAKEQKAAMEAL 702

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A G+  IIIGTH L  + I++  L L++VDE+HRFGV+Q+ K+        +L +TATPI
Sbjct: 703 AEGKIDIIIGTHKLLSEDIRFKDLGLLVVDEEHRFGVRQKEKIKALRADVDILTLTATPI 762

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWIC 489
           PRTL +   G  D+S I   PA R  IKT    + + D+ + R  ++  L  G + Y++ 
Sbjct: 763 PRTLNMALSGMRDLSVIATPPAKRLAIKTF---VRQYDKAVVREAILRELKRGGQVYYL- 818

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                   +N  ++ +    L E    + IAI HG+M + D E VM  F +    LL+ T
Sbjct: 819 -------HNNVETIDQTAALLSELIPEARIAIAHGQMRERDLERVMTDFYHQRYNLLVCT 871

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYT 606
           T+IE GIDV  A+ II++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  
Sbjct: 872 TIIETGIDVPSANTIIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKQMTKDAVK 931

Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           RL  +++ ED   GF++A  DL+ R  GE+LG +QSG
Sbjct: 932 RLEAIESLEDLGAGFVLATHDLEIRGAGELLGDEQSG 968


>gi|229846840|ref|ZP_04466947.1| transcription-repair coupling factor [Haemophilus influenzae
           7P49H1]
 gi|229810329|gb|EEP46048.1| transcription-repair coupling factor [Haemophilus influenzae
           7P49H1]
          Length = 1146

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++   
Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ LE +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K+ Q   
Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D+++ R + +L
Sbjct: 750 NIDILTLTATPIPRTLNMAMNGISDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTTLVPE--ARVIVGHGQMRERELERVMSD 858

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L+N ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967


>gi|260582935|ref|ZP_05850719.1| transcription-repair coupling factor [Haemophilus influenzae NT127]
 gi|260094035|gb|EEW77939.1| transcription-repair coupling factor [Haemophilus influenzae NT127]
          Length = 1146

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFAATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++   
Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ LE +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K+ Q   
Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D+++ R + +L
Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L+N ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967


>gi|148827037|ref|YP_001291790.1| transcription-repair coupling factor [Haemophilus influenzae
           PittGG]
 gi|148718279|gb|ABQ99406.1| transcription-repair coupling factor [Haemophilus influenzae
           PittGG]
          Length = 1146

 Score =  246 bits (629), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++   
Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ LE +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K+ Q   
Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D+++ R + +L
Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L+N ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967


>gi|332522484|ref|ZP_08398736.1| transcription-repair coupling factor [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313748|gb|EGJ26733.1| transcription-repair coupling factor [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 1166

 Score =  246 bits (629), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 178/522 (34%), Positives = 280/522 (53%), Gaps = 34/522 (6%)

Query: 130 KKLKNRIIMVHPHYIFHNSQDVN-FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++LKN   +V   Y+ HN   +  F  IE +     G+  D +  I  +   R+ +  E 
Sbjct: 480 ERLKNYNELVKGDYVVHNVHGIGRFLGIETIK--LQGIHRD-YVTIQYQNSDRISLPVEQ 536

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           IE  L +  S        N +++ R  K  +  S   E +A D+LL     L   R Q K
Sbjct: 537 IES-LSKYVSADGKEPKINKLNDGRFQKTKQKVSKQVEDIA-DDLLR----LYAERSQLK 590

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
              G   + + ++ +    + PF  T+ Q  +I++I +DM  +  M R+L GDVG GKT 
Sbjct: 591 ---GFQFSPDDELQESFDNDFPFVETEDQLRSIQEIKKDMESQLPMDRLLVGDVGFGKTE 647

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA+ A   AV+   Q  I+ P  +LAQQHY+  ++  +N  + V++++    +  +  +L
Sbjct: 648 VAMRAAFKAVKDHKQVAILVPTTVLAQQHYDNFRERFENYPVEVDVLSRFRSKKEQNTSL 707

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E++A GQ  IIIGTH L    +Q+  L L+++DE+ RFGV+ + KL +  +   VL +TA
Sbjct: 708 EKLAKGQVDIIIGTHRLLSKDVQFSDLGLIVIDEEQRFGVKHKEKLKELKSKVDVLTLTA 767

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAY 486
           TPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R    +  G + +
Sbjct: 768 TPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPSLVREAILR---EMDRGGQVF 824

Query: 487 WICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           ++  +++  +KK S  + +V           ++I  +HG+MS+I  E+ +  F NG   +
Sbjct: 825 YVYNKVDTIDKKVSQLQELVPE---------AAIGFVHGQMSEIQLENTLIDFINGDYDV 875

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSK 602
           L+ATT+IE G+D+ + + + +ENA+H GL+ L+QLRGRVGR   I+   L+Y P   LS+
Sbjct: 876 LVATTIIETGVDISNVNTLFVENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKILSE 935

Query: 603 NSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641
            S  RL  +K  TE   GF IA  DL  R  G ILG  QSG 
Sbjct: 936 ISEKRLEAIKGFTELGSGFKIAMRDLAIRGAGNILGASQSGF 977


>gi|16273176|ref|NP_439413.1| transcription-repair coupling factor [Haemophilus influenzae Rd
           KW20]
 gi|260581174|ref|ZP_05848994.1| transcription-repair coupling factor [Haemophilus influenzae RdAW]
 gi|1170943|sp|P45128|MFD_HAEIN RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|1574188|gb|AAC22905.1| transcription-repair coupling factor (mfd) [Haemophilus influenzae
           Rd KW20]
 gi|260092202|gb|EEW76145.1| transcription-repair coupling factor [Haemophilus influenzae RdAW]
          Length = 1146

 Score =  246 bits (629), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++   
Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ LE +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K+ Q   
Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D+++ R + +L
Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L+N ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967


>gi|319776143|ref|YP_004138631.1| transcription-repair coupling factor [Haemophilus influenzae F3047]
 gi|317450734|emb|CBY86954.1| transcription-repair coupling factor [Haemophilus influenzae F3047]
          Length = 1146

 Score =  246 bits (629), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFAATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++   
Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ LE +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K+ Q   
Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D+++ R + +L
Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L+N ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967


>gi|148825849|ref|YP_001290602.1| transcription-repair coupling factor [Haemophilus influenzae
           PittEE]
 gi|148716009|gb|ABQ98219.1| transcription-repair coupling factor [Haemophilus influenzae
           PittEE]
          Length = 1146

 Score =  246 bits (629), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++   
Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ LE +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K+ Q   
Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D+++ R + +L
Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTTLVPE--ARVIVGHGQMRERELERVMSD 858

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L+N ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967


>gi|145638829|ref|ZP_01794437.1| transcription-repair coupling factor [Haemophilus influenzae
           PittII]
 gi|145271801|gb|EDK11710.1| transcription-repair coupling factor [Haemophilus influenzae
           PittII]
 gi|309750812|gb|ADO80796.1| Transcription-repair coupling factor [Haemophilus influenzae R2866]
          Length = 1146

 Score =  246 bits (629), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++   
Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ LE +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K+ Q   
Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D+++ R + +L
Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTTLVPE--ARVIVGHGQMRERELERVMSD 858

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L+N ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967


>gi|224282408|ref|ZP_03645730.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313139552|ref|ZP_07801745.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132062|gb|EFR49679.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171]
          Length = 894

 Score =  246 bits (628), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 198/615 (32%), Positives = 286/615 (46%), Gaps = 133/615 (21%)

Query: 184 VLPEWIEKD--LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           VLPE + +   LL +      AEAF  IH+P    DF+    A   + Y+E    Q ALL
Sbjct: 268 VLPESVRESNHLLHR------AEAFLAIHDPLNTADFKR---AIGTMRYEEAFVSQTALL 318

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
             R   +K+  +P      +  + + ++PF  T  Q   I DI  DM+++  M R+LQG+
Sbjct: 319 QSRSNVRKDAALPC-AGVALRDRFIESLPFPLTGGQREIIDDIGVDMAREYPMQRLLQGE 377

Query: 302 V----------------GSG-----------------KTLVALIAMAAAVEAG------- 321
           V                GSG                  T+ A++    +VE G       
Sbjct: 378 VGSGKTVVAVAAMLQAAGSGHQAVLVAPTQVLAEQHHATISAMLCAIDSVETGDDPSRDA 437

Query: 322 -----------------------GQAVIMAPI----GILAQQHYEFIKKYTQNTQ-IIVE 353
                                  G+A +  P+        +Q      +   NT+ + V 
Sbjct: 438 LSPNDPADLIKAAESAADDGDAKGRAAVKHPVKHSGARSGKQDGAAHAQSDANTRHVPVI 497

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG M  A RR+AL   A G   II+ THA F  + Q   L LV++DEQHRFGV+QR  
Sbjct: 498 LLTGGMKLAARRRALALAASGDPCIIVATHAAFSKTFQAPNLALVVIDEQHRFGVEQRES 557

Query: 414 L-TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---ID 469
           L T+    PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T I+P +    + 
Sbjct: 558 LRTKNDVVPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTFIVPEDDGRMMG 617

Query: 470 EVIERLKVVLSEGKKAYWICPQIEE-------------------------KKESN----- 499
            +   ++  +  G++AY +CP+I+                          ++ES      
Sbjct: 618 SMFAHIRGRIDAGERAYVVCPRIDADDESDGDDDTSGASQIGVYDDSDTYRRESANTTTS 677

Query: 500 ---------------FRSVVE---RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                            SV E   R +SL +      A + GR  D  K+ VM  F +G 
Sbjct: 678 APSQEDGDGAPSRPPLHSVAEIERRLSSLPQFRGIRFATLTGRDDDATKQQVMADFADGA 737

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ATTVIEVG+DV  AS I+I +A+ +GL+QLHQLRGRVGRG   S   L+      
Sbjct: 738 TPVLVATTVIEVGVDVPQASCIVIFDADRYGLSQLHQLRGRVGRGGTDSWAFLISRAEDG 797

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIAR 660
             +  RL V++ T DG  IA+ DL+ R  G++LG  QSG    L     + D+ ++  AR
Sbjct: 798 GPAQQRLQVIQGTLDGAQIAQADLEFRGAGDVLGDAQSGGKSGLKLLRVVKDAKIIADAR 857

Query: 661 KDAKHILTQDPDLTS 675
           + A  +L  DPDL+ 
Sbjct: 858 ERAGRLLADDPDLSG 872


>gi|145634410|ref|ZP_01790120.1| transcription-repair coupling factor [Haemophilus influenzae
           PittAA]
 gi|145268390|gb|EDK08384.1| transcription-repair coupling factor [Haemophilus influenzae
           PittAA]
          Length = 1146

 Score =  246 bits (628), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++   
Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ LE +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K+ Q   
Sbjct: 690 TAKEQKQILESLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D+++ R + +L
Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYTYLLT 918

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L+N ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967


>gi|229845348|ref|ZP_04465480.1| transcription-repair coupling factor [Haemophilus influenzae
           6P18H1]
 gi|229811801|gb|EEP47498.1| transcription-repair coupling factor [Haemophilus influenzae
           6P18H1]
          Length = 1146

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++   
Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ LE +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K+ Q   
Sbjct: 690 TAKEQKQILESLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D+++ R + +L
Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYTYLLT 918

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L+N ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967


>gi|260913085|ref|ZP_05919567.1| transcription-repair coupling factor [Pasteurella dagmatis ATCC
           43325]
 gi|260632672|gb|EEX50841.1| transcription-repair coupling factor [Pasteurella dagmatis ATCC
           43325]
          Length = 1145

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 150/409 (36%), Positives = 234/409 (57%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G   N + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 569 LLDVYAQREAQKGFAFNYDREEFQQFAATFPFEETIDQEMAINAVISDMCQPKAMDRLVC 628

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++   
Sbjct: 629 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 688

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ ++ +  G+  I+IGTH L Q  +Q++ L L+I+DE+HRFGV+Q+ ++ Q   
Sbjct: 689 TTKEQKQVIQNLEEGKVDILIGTHKLIQSDVQFHDLGLLIIDEEHRFGVRQKERIKQLRA 748

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D+++ R + +L
Sbjct: 749 NIDILTLTATPIPRTLNMAMHGIRDLSIISTPPARRLTIKTF---VKQADDLVIR-EAIL 804

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + I + HG+M + + E VM  
Sbjct: 805 REILRGGQVYYLHNDV-----ASIENCAEKLTALVPE--ARITVGHGQMRERELERVMSD 857

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A++FGLAQLHQLRGRVGR    +   LL 
Sbjct: 858 FYHQRFNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQAYAYLLT 917

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L++ ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 918 PPPKTMTKDAQKRLEALESLDNLGAGFILATHDLEIRGAGELLGSEQSG 966


>gi|119484480|ref|ZP_01619097.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106]
 gi|119457954|gb|EAW39077.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106]
          Length = 1147

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 149/416 (35%), Positives = 236/416 (56%), Gaps = 25/416 (6%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + LL +  Q  ++ G    ++    Q++  + P+ PT  Q  + +D+ +DM  +  M R+
Sbjct: 554 VDLLKLYAQRAQQTGYNYPIDTPWQQELEDSFPYQPTPDQLKSTQDVKRDMEAERPMDRL 613

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT V + A+  AV AG Q   +AP  IL QQHY  +K+      I + ++  
Sbjct: 614 VCGDVGFGKTEVGIRAIFKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYPIEIALLNR 673

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               + +R+  +R+  G+  II+GTH++   +IQ+  L L++VDE+ RFGV Q+ K+   
Sbjct: 674 FRTTSEKREIQQRLTTGEIDIIVGTHSILSKTIQFKDLGLLVVDEEQRFGVNQKEKIKTL 733

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LK 476
            T   VL +TATPIPRTL +   G  ++S IT  P  R+PIKT + P N  DE I   ++
Sbjct: 734 KTHVDVLTLTATPIPRTLYMALSGIREMSLITTPPPSRRPIKTHLSPYN--DETIRTAIR 791

Query: 477 VVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             L  G + +++ P+IE  E+K S  R +V          ++ IA+ HG+M+  + ES+M
Sbjct: 792 QELDRGGQVFYVVPRIEGIEEKSSKIREMVP---------SARIAVAHGQMNAAELESIM 842

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F  G  ++L+ TT+IE G+D+   + I+IE+A  FGLAQL+QLRGRVGR   + +   
Sbjct: 843 LTFNAGEAEILVCTTIIESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGRS-GVQAHAW 901

Query: 595 LYHP-------PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           L++P        LS ++  RL  ++       G+ +A  DL+ R  G+ILG +QSG
Sbjct: 902 LFYPVNADGRAALSDDARKRLRAIQEFTQLGSGYQLAMRDLEIRGAGDILGAEQSG 957


>gi|329123308|ref|ZP_08251874.1| transcription-repair coupling factor [Haemophilus aegyptius ATCC
           11116]
 gi|327471404|gb|EGF16854.1| transcription-repair coupling factor [Haemophilus aegyptius ATCC
           11116]
          Length = 1160

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 149/386 (38%), Positives = 222/386 (57%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+     PF  T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    
Sbjct: 607 QQFAATFPFEETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G 
Sbjct: 727 HKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGI 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I+  PA R  IKT    + + D+++ R + +L E   G + Y++   +     ++
Sbjct: 787 RDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAILREILRGGQVYYLHNDV-----AS 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +  E+  +L     + + + HG+M +   E VM  F +    +L+ +T+IE GIDV  
Sbjct: 838 IENTAEKLTALVPE--ARVIVGHGQMRERALERVMSDFYHQRYNVLVCSTIIETGIDVPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++ 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF++A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFILATHDLEIRGAGELLGNEQSG 981


>gi|226330514|ref|ZP_03806032.1| hypothetical protein PROPEN_04432 [Proteus penneri ATCC 35198]
 gi|225201309|gb|EEG83663.1| hypothetical protein PROPEN_04432 [Proteus penneri ATCC 35198]
          Length = 708

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 155/409 (37%), Positives = 230/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G    ++ +  Q   ++ PF  T  QE AI  +L DM Q   M R++ 
Sbjct: 126 LLDVYAQREVKTGFAFKMDKEQYQTFRQSFPFETTPDQEMAINAVLSDMCQAISMDRLVC 185

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  I+ P  +LAQQH++  +    N  + +E+I+   
Sbjct: 186 GDVGFGKTEVAMRAAFLAVNNNKQVAILVPTTLLAQQHFDNFRDRFANWPVNIEMISRFR 245

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++  E++A G   I+IGTH L Q +IQ+  L L+IVDE+HRFGV+ + ++     
Sbjct: 246 SAKEQQQITEKLAEGTIDIVIGTHKLLQPNIQWKDLGLLIVDEEHRFGVRHKERIKAMRA 305

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D+++ R + +L
Sbjct: 306 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLSVKTF---VREYDDLVVR-EAIL 361

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N     ER  +L     + I I HG+M + + E VM+ 
Sbjct: 362 RETLRGGQVYYLYNDVE-----NIEKARERLAALVPE--ARIGIGHGQMRERELERVMND 414

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 415 FHHQRFNVLLCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 474

Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            HP  ++K+++ RL  + + ED   GF +A  DL+ R  GE+LG +QSG
Sbjct: 475 PHPKAMTKDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 523


>gi|157375968|ref|YP_001474568.1| transcription-repair coupling factor [Shewanella sediminis HAW-EB3]
 gi|157318342|gb|ABV37440.1| transcription-repair coupling factor [Shewanella sediminis HAW-EB3]
          Length = 1157

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 157/436 (36%), Positives = 238/436 (54%), Gaps = 17/436 (3%)

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
           N  K  +  W    R+ +     +A ++  +  R+Q +      + +E + AQ    + P
Sbjct: 549 NLNKLGNETWAKAKRKAVEKIRDVAAELLDVYARRQARPGDACKV-IEEEYAQ-FANSFP 606

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE++I  ++ DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P 
Sbjct: 607 FEETVDQETSINAVMTDMCSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPT 666

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LAQQHYE  K    +  + +E+++       ++  +E +A+G+  I+IGTH L Q   
Sbjct: 667 TLLAQQHYENFKDRFADWPVKIEVMSRFKTAKEQKHVMEELANGKVDIVIGTHKLLQSDA 726

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+++DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I  
Sbjct: 727 KFENLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 786

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            PA R  +KT I   +    VIE L+  +  G + Y++         +N  S+ +R + L
Sbjct: 787 PPAKRLSVKTFIREYDDT-TVIEALQREILRGGQVYFL--------HNNVESIEKRASEL 837

Query: 511 HEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            E    + +   HG+M + + E VM  F +    +L+ TT+IE GIDV  A+ IIIE A+
Sbjct: 838 SELLPEARVVTAHGQMRERELEKVMSDFYHQKFNVLVCTTIIETGIDVPSANTIIIERAD 897

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEED 624
            FGLAQLHQLRGRVGR    +   L+  HP  ++K+S  RL  +   ED   GFL+A +D
Sbjct: 898 KFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTKDSVKRLEAIGALEDLGAGFLLATQD 957

Query: 625 LKQRKEGEILGIKQSG 640
           L+ R  GE+LG +QSG
Sbjct: 958 LEIRGAGELLGDEQSG 973


>gi|52424271|ref|YP_087408.1| Mfd protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306323|gb|AAU36823.1| Mfd protein [Mannheimia succiniciproducens MBEL55E]
          Length = 1148

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 158/424 (37%), Positives = 242/424 (57%), Gaps = 23/424 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF  T  QE+AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P
Sbjct: 602  PFEETHDQEAAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVP 661

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHYE  +    N  + VE+++       ++K LE ++ G+  I+IGTH L Q  
Sbjct: 662  TTLLAQQHYENFRDRFANLPVNVEMVSRFRTAKEQKKILEDLSAGKVDILIGTHKLIQSD 721

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +++  L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+
Sbjct: 722  VKFNDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMAMNGIRDLSIIS 781

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              PA R  IKT    + + D+++ R + +L E   G + Y++   +     ++  +  E+
Sbjct: 782  TPPARRLTIKTF---VRQADDLLIR-EAILREILRGGQVYYLHNDV-----ASIENCAEK 832

Query: 507  FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              +L     + I I HG+M + + E VM  F +    +L+ +T+IE GID+  A+ IIIE
Sbjct: 833  LTALVPE--ARIIIGHGQMHERELERVMTDFYHQRFNVLVCSTIIETGIDIPTANTIIIE 890

Query: 567  NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621
             A+HFGLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L++ ++   GF++A
Sbjct: 891  RADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKLMTKDAVKRLEALESLDNLGAGFILA 950

Query: 622  EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
              DL+ R  GE+LG +QSG  + +     L+  LLE A +  K    ++P L  +  Q +
Sbjct: 951  THDLEIRGAGELLGSEQSGQIESIGFS--LYMELLEAAVQAMKQ--GREPSLDELTQQQV 1006

Query: 682  RILL 685
             I L
Sbjct: 1007 EIDL 1010


>gi|269139412|ref|YP_003296113.1| transcription-repair coupling factor (superfamily II helicase)
           [Edwardsiella tarda EIB202]
 gi|267985073|gb|ACY84902.1| transcription-repair coupling factor (superfamily II helicase)
           [Edwardsiella tarda EIB202]
 gi|304559308|gb|ADM41972.1| Transcription-repair coupling factor [Edwardsiella tarda FL6-60]
          Length = 1178

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 149/386 (38%), Positives = 217/386 (56%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +  PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   AV +G 
Sbjct: 622 QLFCQGFPFETTADQEIAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVHSGK 681

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L   A G+  I+IGT
Sbjct: 682 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIELISRFRSAKEQAQVLADTADGKVDILIGT 741

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q+ +Q+  L L+IVDE+HRFGV+Q+ ++        +L +TATPIPRTL +   G 
Sbjct: 742 HKLLQNDVQWSDLGLLIVDEEHRFGVRQKERIKAMRADVDILTLTATPIPRTLNMAMSGM 801

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   ++      
Sbjct: 802 RDLSIIATPPARRMAVKTF---VREYDSLVVR-EAILRETLRGGQVYYLYNDVD-----T 852

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   +R  +L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 853 IQKAADRLATLVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPS 910

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  PP  ++ ++  RL  + + ED 
Sbjct: 911 ANTIIIERADHFGLAQLHQLRGRVGRSYHQAYAYLLTPPPKAMTVDAQKRLEAIASLEDL 970

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 971 GAGFALATHDLEIRGAGELLGDDQSG 996


>gi|311695148|gb|ADP98021.1| transcription-repair-coupling factor [marine bacterium HP15]
          Length = 1177

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 154/431 (35%), Positives = 239/431 (55%), Gaps = 25/431 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W++  ++ L      A ++  +  R++ +K  G       +  +      PF  T  Q+ 
Sbjct: 575 WSTAKQKALEKIRDTAAELLDVYARREARK--GFSFEDPKEAYRAFAAGFPFEETPDQQV 632

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+ + +DM+ +  M R++ GDVG GKT VA+ A   A  +G Q  ++ P  +LAQQHYE
Sbjct: 633 AIQSVFEDMTSEQPMDRLVCGDVGFGKTEVAMRAAFLATWSGKQVAVLVPTTLLAQQHYE 692

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    +T + VE+++         KALE + +G+A I+IGTH L Q  I++  L LVI
Sbjct: 693 SFRDRFSDTPVQVELLSRFRTAGQTSKALEAVENGRADIVIGTHKLLQGDIKFKNLGLVI 752

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DISKITEKPAGRKPI 458
           +DE+HRFGVQQ+ +L        +L +TATPIPRTL + ++G + D+S I   PA R  +
Sbjct: 753 IDEEHRFGVQQKERLKALRAEVDMLNLTATPIPRTLNM-AMGHLRDLSIIATPPARRLSV 811

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           KT +   +   + E I  L+ +L  G + Y++   +   EK   + RS++          
Sbjct: 812 KTFVRQKDNAMVKEAI--LREIL-RGGQVYFLHNDVATIEKTAEDLRSLIPE-------- 860

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + + + HG+M + D E +M  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGLA
Sbjct: 861 -ARVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTTIIETGIDVPSANTIIIERADKFGLA 919

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QLHQLRGRVGR    +   LL  PP  ++ ++  RL  +   +D   GF++A  DL+ R 
Sbjct: 920 QLHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLDAISEAQDLGAGFMLATHDLEIRG 979

Query: 630 EGEILGIKQSG 640
            GE+LG +QSG
Sbjct: 980 AGELLGEEQSG 990


>gi|71902673|ref|YP_279476.1| transcription-repair coupling factor [Streptococcus pyogenes
            MGAS6180]
 gi|71801768|gb|AAX71121.1| transcription-repair coupling factor [Streptococcus pyogenes
            MGAS6180]
          Length = 1167

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 240/441 (54%), Gaps = 25/441 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  +  ++ G   + +  + +    +  F  T+ Q  +IK+I  DM     M R+L 
Sbjct: 579  LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K   +N  + V++++   
Sbjct: 639  GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             +  + + LER+  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 699  SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R   
Sbjct: 759  KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815

Query: 478  VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +  G + +++  +++  EKK S  + +V           +SI  +HG+MS+I  E+ + 
Sbjct: 816  EMDRGGQIFYVYNKVDTIEKKVSELQELVPE---------ASIGFVHGQMSEIQLENTLI 866

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             F NG   +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 867  DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926

Query: 596  YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E
Sbjct: 927  YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984

Query: 651  LHDSLLE--IARKDAKHILTQ 669
            ++  LLE  IA K  K  + Q
Sbjct: 985  MYSQLLEQAIASKQGKTTVRQ 1005


>gi|309972993|gb|ADO96194.1| Transcription-repair coupling factor [Haemophilus influenzae R2846]
          Length = 1146

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 152/409 (37%), Positives = 231/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++   
Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ LE +  G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K+ Q   
Sbjct: 690 TAKEQKQILENLTEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D+++ R + +L
Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L+N ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967


>gi|237736104|ref|ZP_04566585.1| transcription-repair coupling factor [Fusobacterium mortiferum ATCC
           9817]
 gi|229421815|gb|EEO36862.1| transcription-repair coupling factor [Fusobacterium mortiferum ATCC
           9817]
          Length = 988

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 154/426 (36%), Positives = 238/426 (55%), Gaps = 22/426 (5%)

Query: 225 RERLAYDEL-LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           RE++A + L  A +I  +  R+    E G     +    ++   + P+  T SQ  AI+D
Sbjct: 414 REKIAEEMLQFAKEIVEIQARRDL--EAGYSFAPDNLWQEEFEESFPYKETPSQLQAIED 471

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           + +DM     M R++ GDVG GKT VA+ A   A   G Q V+M P  +LAQQHYE   +
Sbjct: 472 VKRDMESSRIMDRVVCGDVGYGKTEVAIRAAFKAAIEGKQVVLMVPTTVLAQQHYERFTE 531

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
             +N  I +E+++  +    + + L++I  G   I+IGTH +  + +++  L LVI+DE+
Sbjct: 532 RMKNYPINIELLSRLLTSKEQTQTLKKIKEGGVDIVIGTHRILSEDVEFKDLRLVIIDEE 591

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            +FGV+ + KL +  +   VL +TATPIPRTL L  LG  D+S I   P GRKPI T  +
Sbjct: 592 QKFGVKAKEKLKKLRSKVDVLTLTATPIPRTLNLALLGIRDLSVIDTPPEGRKPINTFFV 651

Query: 464 P--INRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIA 519
                 I E+I  +K +  EG + ++I   ++  EKK    R ++  +          I 
Sbjct: 652 EGLEKNIREII--MKEIAREG-QVFYIFNSVKGIEKKTQELRKILPEY--------LKID 700

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG+M+  D +  +  F+NG   +L+ATT+IE GID+ +A+ +II+ A+  GL+Q++QL
Sbjct: 701 FVHGQMTPRDIKEKIKEFENGEIDILVATTIIENGIDIENANTMIIDRADKLGLSQIYQL 760

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED----GFLIAEEDLKQRKEGEILG 635
           RGRVGRG   S C LL     +K +  R   +KN E+    G  ++ ED++ R  GEILG
Sbjct: 761 RGRVGRGNRQSYCYLLTKEYQTKKAKEREESIKNLEEIDGGGLQLSMEDMRIRGAGEILG 820

Query: 636 IKQSGM 641
            KQ G+
Sbjct: 821 EKQHGI 826


>gi|94987637|ref|YP_595738.1| transcription-repair coupling factor [Streptococcus pyogenes
            MGAS9429]
 gi|94991503|ref|YP_599602.1| transcription-repair coupling factor [Streptococcus pyogenes
            MGAS2096]
 gi|94541145|gb|ABF31194.1| transcription-repair coupling factor [Streptococcus pyogenes
            MGAS9429]
 gi|94545011|gb|ABF35058.1| Transcription-repair coupling factor [Streptococcus pyogenes
            MGAS2096]
          Length = 1167

 Score =  244 bits (623), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 240/441 (54%), Gaps = 25/441 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  +  ++ G   + +  + +    +  F  T+ Q  +IK+I  DM     M R+L 
Sbjct: 579  LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K   +N  + V++++   
Sbjct: 639  GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             +  + + LER+  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 699  SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R   
Sbjct: 759  KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815

Query: 478  VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +  G + +++  +++  EKK S  + +V           +SI  +HG+MS+I  E+ + 
Sbjct: 816  EMDRGGQIFYVYNKVDTIEKKVSELQELVPE---------ASIGFVHGQMSEIQLENTLI 866

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             F NG   +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 867  DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926

Query: 596  YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E
Sbjct: 927  YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984

Query: 651  LHDSLLE--IARKDAKHILTQ 669
            ++  LLE  IA K  K  + Q
Sbjct: 985  MYSQLLEQAIASKQGKTTVRQ 1005


>gi|145633284|ref|ZP_01789015.1| transcription-repair coupling factor [Haemophilus influenzae 3655]
 gi|144986130|gb|EDJ92720.1| transcription-repair coupling factor [Haemophilus influenzae 3655]
          Length = 1146

 Score =  244 bits (623), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 152/409 (37%), Positives = 232/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++   
Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ L+ +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K+ Q   
Sbjct: 690 TAKEQKQILKSLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D+++ R + +L
Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 805

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYTYLLT 918

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L+N ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967


>gi|217967893|ref|YP_002353399.1| transcription-repair coupling factor [Dictyoglomus turgidum DSM
           6724]
 gi|217336992|gb|ACK42785.1| transcription-repair coupling factor [Dictyoglomus turgidum DSM
           6724]
          Length = 1059

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 153/414 (36%), Positives = 233/414 (56%), Gaps = 17/414 (4%)

Query: 235 AGQIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           A +IA  L++   ++EI  G   + +  + +++  + P+  T+ Q  A+++I +DM    
Sbjct: 500 AKEIAEELLKIYAQREITKGFAFSPDSPLQEELEASFPYIETEDQIKALREIKKDMESTK 559

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R+L GDVG GKT +AL A   AV  G Q  I+ P  ILA QH++  K+  +   + V
Sbjct: 560 PMERVLIGDVGFGKTELALRASFKAVLDGKQVAILVPTTILAYQHWKVFKERLEVFPVNV 619

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
           EI++   P++ +++ +E+I  G+  IIIGTH + Q  +++  L L+IVDE+HRFGV Q+ 
Sbjct: 620 EILSRLKPKSEQKRIIEKIRKGEIDIIIGTHRILQKDVEFKDLGLIIVDEEHRFGVLQKE 679

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
              +K     +L ++ATPIPRTL +   G    S +   P  R PI+T ++  N   E+I
Sbjct: 680 AFKKKYPHVDILYLSATPIPRTLSMVLSGIRQFSVLETPPENRLPIQTFVVEYN--PEII 737

Query: 473 -ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
            E ++  L  G + Y++C  IE         + E  + L    T +IA  HG+M D    
Sbjct: 738 QEGIRRELERGGQVYYVCNDIE-----RLEKIREELSKLVPEATYAIA--HGKMDDEKLT 790

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            VM +F +G   +L+ATT+IE GIDV +A+ + +ENAEH GLAQL+QLRGR+GR  + + 
Sbjct: 791 EVMSNFYDGKIDVLVATTIIESGIDVPNANTLFVENAEHMGLAQLYQLRGRIGRSYKQAY 850

Query: 592 CILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
              L+ P   LS  S  RL  LK       G  +A  DL+ R  G+ILG +Q G
Sbjct: 851 AYFLHAPLKKLSLESIKRLEALKEFSSLGSGLRLALRDLEIRGAGKILGKEQHG 904


>gi|327467732|gb|EGF13226.1| transcription-repair coupling factor [Streptococcus sanguinis SK330]
          Length = 1167

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 157/439 (35%), Positives = 241/439 (54%), Gaps = 28/439 (6%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I L   R Q K   G   + +    ++   + P+  T+ Q  +I+++ +DM     M R+
Sbjct: 584  IKLYAERSQLK---GFAFSTDDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY   K+   +  + VE+++ 
Sbjct: 641  LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               +A +++ LE++  GQ  IIIGTH L    +++  L L+I+DE+ RFGV+ +  L + 
Sbjct: 701  FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475
                 VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   I E + R 
Sbjct: 761  KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819

Query: 476  KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
               +  G + Y++  +++  E+K S  R ++           +SI  +HG+MS+I  E+ 
Sbjct: 820  --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR   I+   
Sbjct: 869  LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928

Query: 594  LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +   
Sbjct: 929  LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986

Query: 649  PELHDSLLE--IARKDAKH 665
             E++  LLE  IA+K  K 
Sbjct: 987  FEMYSQLLEEAIAKKQGKE 1005


>gi|238897365|ref|YP_002923042.1| transcription-repair ATP-dependent coupling factor [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465120|gb|ACQ66894.1| transcription-repair ATP-dependent coupling factor [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 1151

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 157/430 (36%), Positives = 236/430 (54%), Gaps = 23/430 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           WT   ++ L     +A +  LL +  Q   + G     + +  Q    + PF  T  QE 
Sbjct: 551 WTKACKKTLEKVRDVAAE--LLGIYSQRAAKPGFSFKKDSEQYQLFCESFPFETTPDQEQ 608

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DMSQ   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 609 AIHAVLNDMSQPLAMDRLVCGDVGFGKTEVAMRAAFLAVINHKQVAVLVPTTLLAQQHFD 668

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    +  I +E+++       +++ L+++A G+  I+IGTH L ++ + +  L L+I
Sbjct: 669 NFRDRFAHWPIQIEMLSRFRTAKEQKQILQQVAEGKLDILIGTHKLLKNDLCWKDLGLLI 728

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++    T   +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 729 VDEEHRFGVRHKERIKAIRTDVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLSVK 788

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T +   +   I E I  L+ +L  G + Y++  ++E  EK     + +V           
Sbjct: 789 TFVREYDSFLIKEAI--LREIL-RGGQVYYLYNEVETIEKTYETLKKLVPE--------- 836

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I + HG+M + D E VM+ F +    LL+ TT+IE GID+ +A+ IIIE A HFGLAQ
Sbjct: 837 ARITLAHGQMRERDLERVMNDFHHQRFNLLVCTTIIETGIDIANANTIIIEKANHFGLAQ 896

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL  PP  ++ ++  RL V+ + ED   GF +A  DL+ R  
Sbjct: 897 LHQLRGRVGRSHHQAYAYLLTPPPKAITNDAKKRLEVITSLEDLGSGFALATHDLEIRGA 956

Query: 631 GEILGIKQSG 640
           GE+LG  QSG
Sbjct: 957 GELLGENQSG 966


>gi|306826404|ref|ZP_07459718.1| transcription-repair coupling factor [Streptococcus pyogenes ATCC
            10782]
 gi|304431399|gb|EFM34394.1| transcription-repair coupling factor [Streptococcus pyogenes ATCC
            10782]
          Length = 1167

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  +  ++ G   + +  + +    +  F  T+ Q  +IK+I  DM     M R+L 
Sbjct: 579  LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K   +N  + V++++   
Sbjct: 639  GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             +  + + LER+  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 699  SKKEQAETLERVQKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R   
Sbjct: 759  KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815

Query: 478  VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +  G + +++  +++  EKK +  + +V           +SI  +HG+MS+I  E+ + 
Sbjct: 816  EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             F NG   +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 867  DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926

Query: 596  YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E
Sbjct: 927  YRPDKILTEVSEKRLETIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984

Query: 651  LHDSLLE--IARKDAKHILTQ 669
            ++  LLE  IA K  K  + Q
Sbjct: 985  MYSQLLEQVIASKQGKTTVRQ 1005


>gi|222152208|ref|YP_002561383.1| transcription-repair coupling factor [Streptococcus uberis 0140J]
 gi|222113019|emb|CAR40328.1| putative transcription-repair coupling factor [Streptococcus uberis
            0140J]
          Length = 1166

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 157/441 (35%), Positives = 245/441 (55%), Gaps = 25/441 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  +  ++ G   + +  + +    + P+  T+ Q  +I +I QDM   + M R+L 
Sbjct: 579  LLKLYAERSQQKGFSFSADDDLQKSFDDDFPYVETEDQIRSIIEIKQDMESNHPMDRLLV 638

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV    Q  I+ P  +LAQQH+E  K+  +N  I +++++   
Sbjct: 639  GDVGFGKTEVAMRAAFKAVNDHKQVAILVPTTVLAQQHFENFKERFENYPIEIDVLSRFR 698

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             +  +   LE++  GQ  IIIGTH L    +Q+  L L+++DE+ RFGV+ + KL +  T
Sbjct: 699  SKKEQGDTLEKLKKGQVDIIIGTHRLLSKDVQFSDLGLIVIDEEQRFGVKHKEKLKELKT 758

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R   
Sbjct: 759  KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPGLVREAIIR--- 815

Query: 478  VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +  G + +++  +++  +KK S  + +V           +SI  +HG+MS+I  E+ + 
Sbjct: 816  EMDRGGQCFYVYNKVDSIDKKVSELQELVPE---------ASIGFVHGQMSEIQLENTLI 866

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             F NG   +L+ATT+IE G+D+ + + + +ENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 867  DFINGDYDVLVATTIIETGVDISNVNTLFVENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926

Query: 596  YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E
Sbjct: 927  YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984

Query: 651  LHDSLLE--IARKDAKHILTQ 669
            ++  LLE  IA++  K  + Q
Sbjct: 985  MYSQLLEDAIAKRQGKTFVRQ 1005


>gi|21909542|ref|NP_663810.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes MGAS315]
 gi|21903722|gb|AAM78613.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes MGAS315]
          Length = 1139

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  +  ++ G   + +  + +    +  F  T+ Q  +IK+I  DM     M R+L 
Sbjct: 551 LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 610

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K   +N  + V++++   
Sbjct: 611 GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 670

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            +  + + LER+  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 671 SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 730

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
              VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R   
Sbjct: 731 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 787

Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            +  G + +++  +++  EKK +  + +V           +SI  +HG+MS+I  E+ + 
Sbjct: 788 EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 838

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F NG   +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 839 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 898

Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
           Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E
Sbjct: 899 YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 956

Query: 651 LHDSLLE--IARKDAKHILTQ 669
           ++  LLE  IA K  K  + Q
Sbjct: 957 MYSQLLEQAIASKQGKTTVRQ 977


>gi|68250212|ref|YP_249324.1| transcription-repair coupling factor [Haemophilus influenzae
           86-028NP]
 gi|68058411|gb|AAX88664.1| transcription-repair coupling factor [Haemophilus influenzae
           86-028NP]
          Length = 1146

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 152/409 (37%), Positives = 231/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++   
Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ LE +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K+ Q   
Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 749

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + +  +++ R + +L
Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNGDLVVR-EAIL 805

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTTLVPE--ARVIVGHGQMRERELERVMSD 858

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 918

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L+N ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 967


>gi|50913352|ref|YP_059324.1| transcription-repair coupling factor [Streptococcus pyogenes
            MGAS10394]
 gi|50902426|gb|AAT86141.1| Transcription-repair coupling factor [Streptococcus pyogenes
            MGAS10394]
          Length = 1167

 Score =  243 bits (621), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  +  ++ G   + +  + +    +  F  T+ Q  +IK+I  DM     M R+L 
Sbjct: 579  LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K   +N  + V++++   
Sbjct: 639  GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             +  + + LER+  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 699  SKKEQAETLERVQKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R   
Sbjct: 759  KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815

Query: 478  VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +  G + +++  +++  EKK +  + +V           +SI  +HG+MS+I  E+ + 
Sbjct: 816  EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             F NG   +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 867  DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926

Query: 596  YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E
Sbjct: 927  YRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984

Query: 651  LHDSLLE--IARKDAKHILTQ 669
            ++  LLE  IA K  K  + Q
Sbjct: 985  MYSQLLEQAIASKQGKTTVRQ 1005


>gi|307131510|ref|YP_003883526.1| transcription-repair coupling factor [Dickeya dadantii 3937]
 gi|306529039|gb|ADM98969.1| transcription-repair coupling factor [Dickeya dadantii 3937]
          Length = 1149

 Score =  243 bits (621), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 157/429 (36%), Positives = 232/429 (54%), Gaps = 21/429 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           WT  AR++ A +++      LL +  Q     G     + +  Q   +  PF  T  Q  
Sbjct: 550 WTR-ARQKAA-EKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFDTTPDQAQ 607

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM +   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQH++
Sbjct: 608 AINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFD 667

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  + +E+++    Q  + + LE+   G+  I+IGTH L Q  +++  L L+I
Sbjct: 668 NFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVRWRDLGLLI 727

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLAVK 787

Query: 460 TVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           T    +   D ++ R + +L E   G + Y++   +E     N     +R N L     +
Sbjct: 788 TF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----NIEKAAQRLNELVPE--A 836

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IAI HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQL
Sbjct: 837 RIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQL 896

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           HQLRGRVGR    +   LL   P  +S +++ RL  + + ED   GF +A  DL+ R  G
Sbjct: 897 HQLRGRVGRSHHQAYAYLLTPNPKAMSSDAHKRLEAIASLEDLGAGFALATHDLEIRGAG 956

Query: 632 EILGIKQSG 640
           E+LG  QSG
Sbjct: 957 ELLGEDQSG 965


>gi|114563569|ref|YP_751082.1| transcription-repair coupling factor [Shewanella frigidimarina
           NCIMB 400]
 gi|114334862|gb|ABI72244.1| transcription-repair coupling factor [Shewanella frigidimarina
           NCIMB 400]
          Length = 1178

 Score =  243 bits (621), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 152/428 (35%), Positives = 236/428 (55%), Gaps = 19/428 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++ +     +A ++  +  R+Q +    + I+ E + AQ   +  PF  T  QES
Sbjct: 574 WAKAKKKAIERIRDVAAELLDVYARRQARPGDAMSID-EEEYAQ-FSQGFPFEETVDQES 631

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L+DM     M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQHYE
Sbjct: 632 AIHAVLEDMQAPRAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYE 691

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  I++E+++       +   +E+++ G+  I+IGTH L      +  L L++
Sbjct: 692 NFKDRFADWPIVIEVMSRFRTAKEQSSVVEQLSEGKVDIVIGTHKLLSSEANFDNLGLLV 751

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 752 IDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVK 811

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517
           T +   ++       L+ +L  G + Y++   +E  EK   N R ++           + 
Sbjct: 812 TFVREYDKATAREAILREIL-RGGQVYYLHNNVETIEKTAQNIRDLLPE---------AR 861

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +   HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ III+ A+ FGLAQLH
Sbjct: 862 VITAHGQMRERDLEKVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIDRADMFGLAQLH 921

Query: 578 QLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR    +   ++  HP  ++ ++  RL+ ++  ED   GFL+A +DL+ R  GE
Sbjct: 922 QLRGRVGRSHHQAYAYMMTPHPKRMTPDARKRLAAIEALEDLGAGFLLATQDLEIRGAGE 981

Query: 633 ILGIKQSG 640
           +LG +QSG
Sbjct: 982 LLGDEQSG 989


>gi|15674256|ref|NP_268429.1| putative transcription-repair coupling factor [Streptococcus pyogenes
            M1 GAS]
 gi|71909820|ref|YP_281370.1| transcription-repair coupling factor [Streptococcus pyogenes
            MGAS5005]
 gi|13621331|gb|AAK33151.1| putative transcription-repair coupling factor [Streptococcus pyogenes
            M1 GAS]
 gi|71852602|gb|AAZ50625.1| transcription-repair coupling factor [Streptococcus pyogenes
            MGAS5005]
          Length = 1167

 Score =  243 bits (621), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  +  ++ G   + +  + +    +  F  T+ Q  +IK+I  DM     M R+L 
Sbjct: 579  LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K   +N  + V++++   
Sbjct: 639  GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             +  + + LER+  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 699  SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R   
Sbjct: 759  KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815

Query: 478  VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +  G + +++  +++  EKK +  + +V           +SI  +HG+MS+I  E+ + 
Sbjct: 816  EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             F NG   +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 867  DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926

Query: 596  YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E
Sbjct: 927  YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984

Query: 651  LHDSLLE--IARKDAKHILTQ 669
            ++  LLE  IA K  K  + Q
Sbjct: 985  MYSQLLEQAIASKQGKTTVRQ 1005


>gi|28894918|ref|NP_801268.1| transcription-repair coupling factor [Streptococcus pyogenes SSI-1]
 gi|28810163|dbj|BAC63101.1| putative transcription-repair coupling factor [Streptococcus pyogenes
            SSI-1]
          Length = 1167

 Score =  243 bits (621), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  +  ++ G   + +  + +    +  F  T+ Q  +IK+I  DM     M R+L 
Sbjct: 579  LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K   +N  + V++++   
Sbjct: 639  GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             +  + + LER+  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 699  SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R   
Sbjct: 759  KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815

Query: 478  VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +  G + +++  +++  EKK +  + +V           +SI  +HG+MS+I  E+ + 
Sbjct: 816  EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             F NG   +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 867  DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926

Query: 596  YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E
Sbjct: 927  YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984

Query: 651  LHDSLLE--IARKDAKHILTQ 669
            ++  LLE  IA K  K  + Q
Sbjct: 985  MYSQLLEQAIASKQGKTTVRQ 1005


>gi|332365100|gb|EGJ42865.1| transcription-repair coupling factor [Streptococcus sanguinis SK355]
          Length = 1167

 Score =  243 bits (621), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 157/439 (35%), Positives = 241/439 (54%), Gaps = 28/439 (6%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I L   R Q K   G   + +    ++   + P+  T+ Q  +I+++ +DM     M R+
Sbjct: 584  IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY   K+   +  + VE+++ 
Sbjct: 641  LVGDVGFGKTEVAMRAAFKAVNNHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               +A +++ LE++  GQ  IIIGTH L    +++  L L+I+DE+ RFGV+ +  L + 
Sbjct: 701  FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475
                 VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   I E I R 
Sbjct: 761  KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAILR- 819

Query: 476  KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
               +  G + Y++  +++  E+K S  R ++           +SI  +HG+MS+I  E+ 
Sbjct: 820  --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR   I+   
Sbjct: 869  LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928

Query: 594  LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +   
Sbjct: 929  LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986

Query: 649  PELHDSLLE--IARKDAKH 665
             E++  LLE  IA+K  + 
Sbjct: 987  FEMYSQLLEEAIAKKQGRE 1005


>gi|56808860|ref|ZP_00366571.1| COG1197: Transcription-repair coupling factor (superfamily II
            helicase) [Streptococcus pyogenes M49 591]
          Length = 1167

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  +  ++ G   + +  + +    +  F  T+ Q  +IK+I  DM     M R+L 
Sbjct: 579  LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K   +N  + V++++   
Sbjct: 639  GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             +  + + LER+  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 699  SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R   
Sbjct: 759  KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815

Query: 478  VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +  G + +++  +++  EKK +  + +V           +SI  +HG+MS+I  E+ + 
Sbjct: 816  EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             F NG   +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 867  DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926

Query: 596  YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E
Sbjct: 927  YRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984

Query: 651  LHDSLLE--IARKDAKHILTQ 669
            ++  LLE  IA K  K  + Q
Sbjct: 985  MYSQLLEQAIASKQGKTTVRQ 1005


>gi|209558593|ref|YP_002285065.1| Transcription-repair coupling factor [Streptococcus pyogenes NZ131]
 gi|209539794|gb|ACI60370.1| Transcription-repair coupling factor [Streptococcus pyogenes NZ131]
          Length = 1139

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  +  ++ G   + +  + +    +  F  T+ Q  +IK+I  DM     M R+L 
Sbjct: 551 LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 610

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K   +N  + V++++   
Sbjct: 611 GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 670

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            +  + + LER+  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 671 SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 730

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
              VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R   
Sbjct: 731 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 787

Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            +  G + +++  +++  EKK +  + +V           +SI  +HG+MS+I  E+ + 
Sbjct: 788 EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 838

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F NG   +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 839 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 898

Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
           Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E
Sbjct: 899 YRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 956

Query: 651 LHDSLLE--IARKDAKHILTQ 669
           ++  LLE  IA K  K  + Q
Sbjct: 957 MYSQLLEQAIASKQGKTTVRQ 977


>gi|325695766|gb|EGD37665.1| transcription-repair coupling factor [Streptococcus sanguinis SK150]
          Length = 1167

 Score =  243 bits (620), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 156/439 (35%), Positives = 241/439 (54%), Gaps = 28/439 (6%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I L   R Q K   G   + +    ++   + P+  T+ Q  +I+++ +DM     M R+
Sbjct: 584  IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY   K+   +  + VE+++ 
Sbjct: 641  LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               +A +++ LE++  GQ  IIIGTH L    +++  L L+I+DE+ RFGV+ +  L + 
Sbjct: 701  FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475
                 VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   I E + R 
Sbjct: 761  KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819

Query: 476  KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
               +  G + Y++  +++  E+K S  R ++           +SI  +HG+MS+I  E+ 
Sbjct: 820  --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR   I+   
Sbjct: 869  LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928

Query: 594  LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +   
Sbjct: 929  LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986

Query: 649  PELHDSLLE--IARKDAKH 665
             E++  LLE  IA+K  + 
Sbjct: 987  FEMYSQLLEEAIAKKQGRE 1005


>gi|94993402|ref|YP_601500.1| transcription-repair coupling factor [Streptococcus pyogenes
            MGAS10750]
 gi|94546910|gb|ABF36956.1| Transcription-repair coupling factor [Streptococcus pyogenes
            MGAS10750]
          Length = 1167

 Score =  243 bits (620), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  +  ++ G   + +  + +    +  F  T+ Q  +IK+I  DM     M R+L 
Sbjct: 579  LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K   +N  + V++++   
Sbjct: 639  GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             +  + + LER+  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 699  SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R   
Sbjct: 759  KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815

Query: 478  VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +  G + +++  +++  EKK +  + +V           +SI  +HG+MS+I  E+ + 
Sbjct: 816  EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             F NG   +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 867  DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926

Query: 596  YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E
Sbjct: 927  YRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984

Query: 651  LHDSLLE--IARKDAKHILTQ 669
            ++  LLE  IA K  K  + Q
Sbjct: 985  MYSQLLEQAIASKQGKTTIRQ 1005


>gi|156934399|ref|YP_001438315.1| transcription-repair coupling factor [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532653|gb|ABU77479.1| hypothetical protein ESA_02230 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1148

 Score =  243 bits (620), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 149/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q      PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCEGFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + LE+ A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIELLSRFRSAKEQAQVLEQAAEGKVDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKMKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREVLRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER  +L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLANLVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  PP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPPPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965


>gi|332363612|gb|EGJ41393.1| transcription-repair coupling factor [Streptococcus sanguinis SK1059]
          Length = 1167

 Score =  243 bits (620), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 156/439 (35%), Positives = 241/439 (54%), Gaps = 28/439 (6%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I L   R Q K   G   + +    ++   + P+  T+ Q  +I+++ +DM     M R+
Sbjct: 584  IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY   K+   +  + VE+++ 
Sbjct: 641  LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               +A +++ LE++  GQ  IIIGTH L    +++  L L+I+DE+ RFGV+ +  L + 
Sbjct: 701  FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475
                 VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   I E + R 
Sbjct: 761  KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819

Query: 476  KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
               +  G + Y++  +++  E+K S  R ++           +SI  +HG+MS+I  E+ 
Sbjct: 820  --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR   I+   
Sbjct: 869  LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928

Query: 594  LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +   
Sbjct: 929  LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986

Query: 649  PELHDSLLE--IARKDAKH 665
             E++  LLE  IA+K  + 
Sbjct: 987  FEMYSQLLEEAIAKKQGRE 1005


>gi|317491827|ref|ZP_07950262.1| transcription-repair coupling factor [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920261|gb|EFV41585.1| transcription-repair coupling factor [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 1153

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 149/398 (37%), Positives = 217/398 (54%), Gaps = 21/398 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G     + +  Q   ++ PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+
Sbjct: 586 GFAFKQDREAYQMFCQSFPFETTPDQSMAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 645

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV    Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L+  
Sbjct: 646 RAAFLAVHNNKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQVLQDA 705

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A G+  I+IGTH L Q  +Q+  L L+IVDE+HRFGV+Q+ ++        +L +TATPI
Sbjct: 706 AEGKVDILIGTHKLLQADVQWRDLGLLIVDEEHRFGVRQKERIKAMRADVDILTLTATPI 765

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWIC 489
           PRTL +   G  D+S I   PA R  +KT    +   D ++ R  ++  ++ G + Y++ 
Sbjct: 766 PRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVREAILREVTRGGQVYYLY 822

Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             +E  EK       +V           + IAI HG+M + + E VM+ F +    +L+ 
Sbjct: 823 NDVENIEKAAQCLAELVPE---------ARIAIGHGQMRERELERVMNDFHHQRFNVLVC 873

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605
           TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  PP  +S ++ 
Sbjct: 874 TTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSFHQAYAYLLTPPPKAMSTDAQ 933

Query: 606 TRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 934 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGDDQSG 971


>gi|324989584|gb|EGC21530.1| transcription-repair coupling factor [Streptococcus sanguinis SK353]
          Length = 1167

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 156/439 (35%), Positives = 241/439 (54%), Gaps = 28/439 (6%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I L   R Q K   G   + +    ++   + P+  T+ Q  +I+++ +DM     M R+
Sbjct: 584  IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY   K+   +  + VE+++ 
Sbjct: 641  LVGDVGFGKTEVAMRAAFKAVNNHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               +A +++ LE++  GQ  IIIGTH L    +++  L L+I+DE+ RFGV+ +  L + 
Sbjct: 701  FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475
                 VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   I E + R 
Sbjct: 761  KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819

Query: 476  KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
               +  G + Y++  +++  E+K S  R ++           +SI  +HG+MS+I  E+ 
Sbjct: 820  --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR   I+   
Sbjct: 869  LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928

Query: 594  LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +   
Sbjct: 929  LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986

Query: 649  PELHDSLLE--IARKDAKH 665
             E++  LLE  IA+K  + 
Sbjct: 987  FEMYSQLLEEAIAKKQGRE 1005


>gi|125716894|ref|YP_001034027.1| transcription-repair coupling factor [Streptococcus sanguinis SK36]
 gi|125496811|gb|ABN43477.1| Transcription-repair coupling factor, putative [Streptococcus
            sanguinis SK36]
          Length = 1167

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 156/439 (35%), Positives = 241/439 (54%), Gaps = 28/439 (6%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I L   R Q K   G   + +    ++   + P+  T+ Q  +I+++ +DM     M R+
Sbjct: 584  IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY   K+   +  + VE+++ 
Sbjct: 641  LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               +A +++ LE++  GQ  IIIGTH L    +++  L L+I+DE+ RFGV+ +  L + 
Sbjct: 701  FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475
                 VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   I E + R 
Sbjct: 761  KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819

Query: 476  KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
               +  G + Y++  +++  E+K S  R ++           +SI  +HG+MS+I  E+ 
Sbjct: 820  --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR   I+   
Sbjct: 869  LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928

Query: 594  LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +   
Sbjct: 929  LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986

Query: 649  PELHDSLLE--IARKDAKH 665
             E++  LLE  IA+K  + 
Sbjct: 987  FEMYSQLLEEAIAKKQGRE 1005


>gi|323350835|ref|ZP_08086494.1| transcription-repair coupling factor [Streptococcus sanguinis VMC66]
 gi|322123009|gb|EFX94712.1| transcription-repair coupling factor [Streptococcus sanguinis VMC66]
          Length = 1167

 Score =  243 bits (619), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 156/439 (35%), Positives = 241/439 (54%), Gaps = 28/439 (6%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I L   R Q K   G   + +    ++   + P+  T+ Q  +I+++ +DM     M R+
Sbjct: 584  IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY   K+   +  + VE+++ 
Sbjct: 641  LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               +A +++ LE++  GQ  IIIGTH L    +++  L L+I+DE+ RFGV+ +  L + 
Sbjct: 701  FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475
                 VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   I E + R 
Sbjct: 761  KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819

Query: 476  KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
               +  G + Y++  +++  E+K S  R ++           +SI  +HG+MS+I  E+ 
Sbjct: 820  --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR   I+   
Sbjct: 869  LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928

Query: 594  LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +   
Sbjct: 929  LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986

Query: 649  PELHDSLLE--IARKDAKH 665
             E++  LLE  IA+K  + 
Sbjct: 987  FEMYSQLLEEAIAKKQGRE 1005


>gi|312282627|dbj|BAJ34179.1| unnamed protein product [Thellungiella halophila]
          Length = 823

 Score =  243 bits (619), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 146/380 (38%), Positives = 224/380 (58%), Gaps = 17/380 (4%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            P++ T  Q+ A  D+ +D++++   M R++ GDVG GKT VAL A+   V AG QA+++
Sbjct: 266 FPYNATPDQKQAFLDVDKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 325

Query: 328 APIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           AP  +LA+QHY+ I ++++   QI V +++    +A + + LE I +G  +II+GTH+L 
Sbjct: 326 APTIVLAKQHYDVISERFSLYPQIKVGLLSRFQTKAEKEEYLEMIKNGDLNIIVGTHSLL 385

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              + Y  L L++VDE+ RFGV+Q+ K+    T+  VL ++ATPIPRTL L   G  D S
Sbjct: 386 GSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDAS 445

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I+  P  R PIKT +    R ++VIE +K  L  G + +++ P+I        + + E 
Sbjct: 446 LISTPPPERIPIKTHLSSF-RKEKVIEAIKNELDRGGQVFYVLPRI--------KGLEEV 496

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            N L E F    IA+ HG+      E  M+ F  G  K+LI T ++E G+D+ +A+ III
Sbjct: 497 MNFLEEAFPDIDIAMAHGKRYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIII 556

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620
           ++ + FGLAQL+QLRGRVGR ++ +   L Y     LS  +  RLS L+   +   GF +
Sbjct: 557 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQL 616

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           AE D+  R  G I G +Q+G
Sbjct: 617 AERDMGIRGFGTIFGEQQTG 636


>gi|251781475|ref|YP_002995776.1| putative transcription-repair coupling factor [Streptococcus
            dysgalactiae subsp. equisimilis GGS_124]
 gi|242390103|dbj|BAH80562.1| putative transcription-repair coupling factor [Streptococcus
            dysgalactiae subsp. equisimilis GGS_124]
          Length = 1166

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 157/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  +  ++ G   + +  + +    +  F  T+ Q  +IK+I  DM     M R+L 
Sbjct: 579  LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K   +N  + V++++   
Sbjct: 639  GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             +  + + LER+  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 699  SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R   
Sbjct: 759  KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815

Query: 478  VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +  G + +++  +++  +KK +  + +V           +SI  +HG+MS+I  E+ + 
Sbjct: 816  EMDRGGQVFYVYNKVDTIDKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             F NG   +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 867  DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926

Query: 596  YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E
Sbjct: 927  YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984

Query: 651  LHDSLLE--IARKDAKHILTQ 669
            ++  LLE  IA K  K  + Q
Sbjct: 985  MYSQLLEQAIASKQGKTTVRQ 1005


>gi|325686483|gb|EGD28512.1| transcription-repair coupling factor [Streptococcus sanguinis SK72]
          Length = 1167

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 156/439 (35%), Positives = 240/439 (54%), Gaps = 28/439 (6%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I L   R Q K   G   + +    ++   + P+  T+ Q  +I+++ +DM     M R+
Sbjct: 584  IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY   K+   +  + VE+++ 
Sbjct: 641  LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               +A +++ LE++  GQ  IIIGTH L    +++  L L+I+DE+ RFGV+ +  L + 
Sbjct: 701  FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475
                 VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   I E + R 
Sbjct: 761  KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819

Query: 476  KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
               +  G + Y++  +++  E+K S  R ++            SI  +HG+MS+I  E+ 
Sbjct: 820  --EIDRGGQVYYLYNKVDTIEQKVSELRELIPEV---------SIGYVHGQMSEIRLENT 868

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR   I+   
Sbjct: 869  LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928

Query: 594  LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +   
Sbjct: 929  LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986

Query: 649  PELHDSLLE--IARKDAKH 665
             E++  LLE  IA+K  + 
Sbjct: 987  FEMYSQLLEEAIAKKQGRE 1005


>gi|324991860|gb|EGC23783.1| transcription-repair coupling factor [Streptococcus sanguinis SK405]
 gi|324996250|gb|EGC28160.1| transcription-repair coupling factor [Streptococcus sanguinis SK678]
 gi|325698026|gb|EGD39907.1| transcription-repair coupling factor [Streptococcus sanguinis SK160]
 gi|327458484|gb|EGF04834.1| transcription-repair coupling factor [Streptococcus sanguinis SK1]
 gi|327490344|gb|EGF22131.1| transcription-repair coupling factor [Streptococcus sanguinis SK1058]
          Length = 1167

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 156/439 (35%), Positives = 240/439 (54%), Gaps = 28/439 (6%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I L   R Q K   G   + +    ++   + P+  T+ Q  +I+++ +DM     M R+
Sbjct: 584  IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY   K+   +  + VE+++ 
Sbjct: 641  LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               +A +++ LE++  GQ  IIIGTH L    +++  L L+I+DE+ RFGV+ +  L + 
Sbjct: 701  FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475
                 VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   I E + R 
Sbjct: 761  KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819

Query: 476  KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
               +  G + Y++  +++  E+K S  R ++            SI  +HG+MS+I  E+ 
Sbjct: 820  --EIDRGGQVYYLYNKVDTIEQKVSELRELIPEV---------SIGYVHGQMSEIRLENT 868

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR   I+   
Sbjct: 869  LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928

Query: 594  LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +   
Sbjct: 929  LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986

Query: 649  PELHDSLLE--IARKDAKH 665
             E++  LLE  IA+K  + 
Sbjct: 987  FEMYSQLLEEAIAKKQGRE 1005


>gi|323126266|gb|ADX23563.1| Transcription-repair coupling factor [Streptococcus dysgalactiae
            subsp. equisimilis ATCC 12394]
          Length = 1166

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 157/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  +  ++ G   + +  + +    +  F  T+ Q  +IK+I  DM     M R+L 
Sbjct: 579  LLKLYAERSQQKGFSFSPDDDLQRAFDDDFTFVETEDQLRSIKEIKADMESMQPMDRLLV 638

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K   +N  + V++++   
Sbjct: 639  GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             +  + + LER+  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 699  SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R   
Sbjct: 759  KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815

Query: 478  VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +  G + +++  +++  +KK +  + +V           +SI  +HG+MS+I  E+ + 
Sbjct: 816  EMDRGGQVFYVYNKVDTIDKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             F NG   +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 867  DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926

Query: 596  YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E
Sbjct: 927  YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984

Query: 651  LHDSLLE--IARKDAKHILTQ 669
            ++  LLE  IA K  K  + Q
Sbjct: 985  MYSQLLEQAIASKQGKTTVRQ 1005


>gi|311063752|ref|YP_003970477.1| ATP-dependent DNA helicase RecG [Bifidobacterium bifidum PRL2010]
 gi|310866071|gb|ADP35440.1| RecG ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010]
          Length = 894

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 281/615 (45%), Gaps = 133/615 (21%)

Query: 184 VLPEWIEKD--LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           VLPE + +   LL +      AEAF  IH+P    DF+    A   + Y+E    Q ALL
Sbjct: 268 VLPESVRESNHLLHR------AEAFLAIHDPLNTADFKR---AIGTMRYEEAFVSQTALL 318

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
             R   +K+  +P      +  + + ++PF  T  Q   I DI  DM+++  M R+LQG+
Sbjct: 319 QSRSNVRKDAALPC-AGVALRDRFIESLPFPLTGGQREIIDDIGVDMAREYPMQRLLQGE 377

Query: 302 V----------------GSG-----------------KTLVALIAMAAAVEAG------- 321
           V                GSG                  T+ A++     VE G       
Sbjct: 378 VGSGKTVVAVAAMLQAAGSGHQAVLVAPTQVLAEQHHATISAMLCAIDGVETGDDPSRDA 437

Query: 322 -----------------------GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITG 357
                                  G+  +  P+     +  +       NT+ + V ++TG
Sbjct: 438 LSPNDPADLIKAAESAADDGDAKGRTAVKHPVKHSGARRGKQDGAAHANTRHVPVILLTG 497

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQ 416
            M  A RR+AL   A G   II+ THA F  + Q   L LV++DEQHRFGV+QR  L T+
Sbjct: 498 GMKLAARRRALALAASGDPCIIVATHAAFSKTFQAPNLALVVIDEQHRFGVEQRESLRTK 557

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIE 473
               PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T I+P +    +  +  
Sbjct: 558 NDVVPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTFIVPEDDGRMMGSMFA 617

Query: 474 RLKVVLSEGKKAYWICPQI----------------------------------------- 492
            ++  +  G++AY +CP+I                                         
Sbjct: 618 HIRGRIDAGERAYVVCPRIDADDESDGDDDTSGASQIGVYDDSDAYRRESAAAAANTAAS 677

Query: 493 ----EEKKESNFR----SVVE---RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
               E+   +  R    SV E   R +SL +      A + GR  D  K+ VM  F +G 
Sbjct: 678 APSQEDGDGAPSRPPLHSVAEIERRLSSLPQFRGVRFATLTGRDDDATKQQVMADFADGA 737

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ATTVIEVG+DV  AS I+I +A+ +GL+QLHQLRGRVGRG   S   L+      
Sbjct: 738 TPVLVATTVIEVGVDVPQASCIVIFDADRYGLSQLHQLRGRVGRGGTDSWAFLISRAEDG 797

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIAR 660
             +  RL V++ T DG  IA+ DL+ R  G++LG  QSG    L     + D  ++  AR
Sbjct: 798 GPAQQRLQVIQGTLDGAQIAQADLEFRGAGDVLGDAQSGGKSGLKLLRVVKDVKIIADAR 857

Query: 661 KDAKHILTQDPDLTS 675
           + A  +L  DPDL+ 
Sbjct: 858 ERAGRLLADDPDLSG 872


>gi|195977163|ref|YP_002122407.1| transcription-repair coupling factor [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195973868|gb|ACG61394.1| transcription-repair coupling factor [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 1164

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 147/411 (35%), Positives = 230/411 (55%), Gaps = 21/411 (5%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  +  ++ G   + + ++ +    +  F  T  Q  +IK++ +DM     M R+L 
Sbjct: 579 LLKLYAERSQQKGFQFSPDDELQKAFEEDFAFVETDDQLRSIKEVKKDMESVRPMDRLLV 638

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   A+    Q  I+ P  +LAQQHYE  ++  +N  + +++++   
Sbjct: 639 GDVGFGKTEVAMRAAFKAIGDHKQVAILVPTTVLAQQHYENFRERFENYPVEIDVLSRFR 698

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            +  + ++LER+  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 699 SKKEQAESLERLKKGQVDIIIGTHRLLSKDVIFSDLGLIVIDEEQRFGVKHKETLKELKT 758

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
              VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   I E I R   
Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLIREAIIR--- 815

Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            +  G + +++  +++  +KK +  + +V           +SI  +HG+MSDI  E+ + 
Sbjct: 816 EMDRGGQVFYVYNKVDTIDKKVAELQELVPE---------ASIGFVHGQMSDIQLENTLM 866

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F NG   +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926

Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641
           Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG 
Sbjct: 927 YKPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGF 977


>gi|145630886|ref|ZP_01786663.1| transcription-repair coupling factor [Haemophilus influenzae R3021]
 gi|144983546|gb|EDJ91014.1| transcription-repair coupling factor [Haemophilus influenzae R3021]
          Length = 427

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 222/386 (57%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+      F  T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    
Sbjct: 28  QQFAATFSFEETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHK 87

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGT
Sbjct: 88  QVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGT 147

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G 
Sbjct: 148 HKLIQSDVKFSDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGI 207

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I+  PA R  IKT    + + D+++ R + +L E   G + Y++   +     ++
Sbjct: 208 RDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAILREILRGGQVYYLHNDV-----AS 258

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +  E+  +L     + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  
Sbjct: 259 IENTAEKLTALVPE--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPT 316

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++ 
Sbjct: 317 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNL 376

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF++A  DL+ R  GE+LG +QSG
Sbjct: 377 GAGFILATHDLEIRGAGELLGNEQSG 402


>gi|24378538|ref|NP_720493.1| putative transcription-repair coupling factor [Streptococcus mutans
           UA159]
 gi|24376386|gb|AAN57799.1|AE014853_6 putative transcription-repair coupling factor [Streptococcus mutans
           UA159]
          Length = 1162

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/413 (36%), Positives = 228/413 (55%), Gaps = 24/413 (5%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + L   R Q K   G   + + K  ++   +  +  T+ Q  +IK++ +DM +   M R+
Sbjct: 580 LKLYAERSQLK---GFAFSPDDKNQEEFDNDFAYVETEDQLRSIKEVKKDMEKDQPMDRL 636

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY   K+  +N  + V +++ 
Sbjct: 637 LVGDVGFGKTEVAMRAAFKAVNDDKQVAVLVPTTVLAQQHYNTFKERFENFPVNVAMMSR 696

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
              +  + + L ++A GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L + 
Sbjct: 697 FKTKTEQSETLTKLAKGQVDIIIGTHRLLSKDVTFKDLGLLVIDEEQRFGVKHKETLKEL 756

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERL 475
            T   VL +TATPIPRTL ++ LG  D+S I   P+ R P++T ++  N   I E I R 
Sbjct: 757 KTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPSNRYPVQTYVMETNASVIREAIMR- 815

Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
              +  G + ++I  +++  +KK +  R ++   N         I  +HG+MS+I  E+ 
Sbjct: 816 --EIDRGGQIFYIYNRVDTIDKKVAELRELIPEAN---------IGFVHGKMSEIQLENT 864

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F +G   LL+ TT+IE GID+ + + + IENA++ GL+ L+QLRGRVGR   I+   
Sbjct: 865 LLDFISGEYDLLVTTTIIETGIDISNVNTLFIENADYMGLSTLYQLRGRVGRSNRIAYAY 924

Query: 594 LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641
           L+YHP   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG 
Sbjct: 925 LMYHPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSSQSGF 977


>gi|332364170|gb|EGJ41947.1| transcription-repair coupling factor [Streptococcus sanguinis SK49]
          Length = 1167

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 155/438 (35%), Positives = 241/438 (55%), Gaps = 28/438 (6%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I L   R Q K   G   + +    ++   + P+  T+ Q  +I+++ +DM     M R+
Sbjct: 584  IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY   K+   +  + VE+++ 
Sbjct: 641  LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               ++ +++ LE++  GQ  IIIGTH L    +++  L L+I+DE+ RFGV+ +  L + 
Sbjct: 701  FRSKSEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475
                 VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   I E + R 
Sbjct: 761  KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819

Query: 476  KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
               +  G + Y++  +++  E+K S  R ++           +SI  +HG+MS+I  E+ 
Sbjct: 820  --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR   I+   
Sbjct: 869  LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928

Query: 594  LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +   
Sbjct: 929  LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986

Query: 649  PELHDSLLE--IARKDAK 664
             E++  LLE  IA+K  +
Sbjct: 987  FEMYSQLLEEAIAKKQGR 1004


>gi|307261826|ref|ZP_07543490.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868443|gb|EFN00256.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 1149

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/380 (39%), Positives = 218/380 (57%), Gaps = 19/380 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ 
Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+
Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 722

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +Q+  L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I
Sbjct: 723 DVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVI 782

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
              PA R  IKT    + + D++I + + +L E   G + Y++   +     +   +   
Sbjct: 783 ASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYYLHNDV-----ATIENCAT 833

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +   L     + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ III
Sbjct: 834 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  PP  L+K++  RL   S + N   GF++
Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVL 951

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG +QSG
Sbjct: 952 ATHDLEIRGAGELLGAEQSG 971


>gi|303253501|ref|ZP_07339640.1| transcription-repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248372|ref|ZP_07530395.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302647611|gb|EFL77828.1| transcription-repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855110|gb|EFM87290.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 1149

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/380 (39%), Positives = 218/380 (57%), Gaps = 19/380 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ 
Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+
Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 722

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +Q+  L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I
Sbjct: 723 DVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVI 782

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
              PA R  IKT    + + D++I + + +L E   G + Y++   +     +   +   
Sbjct: 783 ASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYYLHNDV-----ATIENCAT 833

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +   L     + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ III
Sbjct: 834 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  PP  L+K++  RL   S + N   GF++
Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVL 951

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG +QSG
Sbjct: 952 ATHDLEIRGAGELLGAEQSG 971


>gi|307257406|ref|ZP_07539175.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864058|gb|EFM95972.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 1149

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/380 (39%), Positives = 218/380 (57%), Gaps = 19/380 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ 
Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+
Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 722

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +Q+  L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I
Sbjct: 723 DVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVI 782

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
              PA R  IKT    + + D++I + + +L E   G + Y++   +     +   +   
Sbjct: 783 ASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYYLHNDV-----ATIENCAT 833

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +   L     + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ III
Sbjct: 834 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  PP  L+K++  RL   S + N   GF++
Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVL 951

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG +QSG
Sbjct: 952 ATHDLEIRGAGELLGAEQSG 971


>gi|307246259|ref|ZP_07528340.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307255243|ref|ZP_07537058.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259678|ref|ZP_07541401.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306852868|gb|EFM85092.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306861792|gb|EFM93771.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866218|gb|EFM98083.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 1149

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/380 (39%), Positives = 218/380 (57%), Gaps = 19/380 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ 
Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+
Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 722

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +Q+  L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I
Sbjct: 723 DVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVI 782

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
              PA R  IKT    + + D++I + + +L E   G + Y++   +     +   +   
Sbjct: 783 ASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYYLHNDV-----ATIENCAT 833

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +   L     + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ III
Sbjct: 834 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  PP  L+K++  RL   S + N   GF++
Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVL 951

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG +QSG
Sbjct: 952 ATHDLEIRGAGELLGAEQSG 971


>gi|332141064|ref|YP_004426802.1| transcription-repair coupling factor [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551086|gb|AEA97804.1| transcription-repair coupling factor [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 1165

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 161/428 (37%), Positives = 230/428 (53%), Gaps = 19/428 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           WT   ++       +A ++  +  R+  K      IN +    Q    + PF  T  Q  
Sbjct: 568 WTKAKQKAAEKVRDVAAELLDVYARRAAKPGFEYKINWDDY--QAFADSFPFEETPDQAQ 625

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  ++ DM   + M R++ GDVG GKT VA+ A   A  AG Q  I+ P  +LAQQHYE
Sbjct: 626 AIAAVMHDMGSPSAMDRLVCGDVGFGKTEVAMRAAFLAANAGKQVAILVPTTLLAQQHYE 685

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K         +E+++  +    ++  +ERI  G+  I++GTH L    I+Y  L LVI
Sbjct: 686 NFKDRFAAWPFEIEVMSRFVSGKAQKSVVERIGEGKVDIVVGTHKLLSSDIKYKDLGLVI 745

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV+Q+ KL        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 746 IDEEHRFGVRQKEKLKSLRADVDILTLTATPIPRTLNMALSGMRDLSIIATAPARRLSIK 805

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           T +   N+  I E I R    +  G + Y++  ++    ES  R+V E    + E   + 
Sbjct: 806 TFVQQRNKAVIREAIMR---EILRGGQVYFLHNEV----ESIARTVEEIAEIVPE---AR 855

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA+ HG+M + + ESVM  F +    +L+ TT+IE GIDV  A+ II++ A+H GLAQLH
Sbjct: 856 IAMGHGQMRERELESVMSDFYHQRYNVLVCTTIIETGIDVPSANTIIMDRADHLGLAQLH 915

Query: 578 QLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR    +   LL  HP  ++K++  RL  +   ED   GF +A  DL+ R  GE
Sbjct: 916 QLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISQLEDLGAGFALATHDLEIRGAGE 975

Query: 633 ILGIKQSG 640
           +LG  QSG
Sbjct: 976 LLGDDQSG 983


>gi|53728955|ref|ZP_00134409.2| COG1197: Transcription-repair coupling factor (superfamily II
           helicase) [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126208803|ref|YP_001054028.1| transcription-repair coupling factor [Actinobacillus
           pleuropneumoniae L20]
 gi|126097595|gb|ABN74423.1| transcription-repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 1149

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/380 (39%), Positives = 218/380 (57%), Gaps = 19/380 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ 
Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+
Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 722

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +Q+  L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I
Sbjct: 723 DVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVI 782

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
              PA R  IKT    + + D++I + + +L E   G + Y++   +     +   +   
Sbjct: 783 ASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYYLHNDV-----ATIENCAT 833

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +   L     + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ III
Sbjct: 834 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  PP  L+K++  RL   S + N   GF++
Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVL 951

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG +QSG
Sbjct: 952 ATHDLEIRGAGELLGAEQSG 971


>gi|88860092|ref|ZP_01134731.1| transcription-repair ATP-dependent coupling factor
           [Pseudoalteromonas tunicata D2]
 gi|88818086|gb|EAR27902.1| transcription-repair ATP-dependent coupling factor
           [Pseudoalteromonas tunicata D2]
          Length = 1157

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 156/411 (37%), Positives = 228/411 (55%), Gaps = 23/411 (5%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  + K ++G     + K  ++ +   PF  T+ Q++AI  +L DM     M R++ 
Sbjct: 577 LLDIYAKRKIKLGNAFRHDKKAYRQFVDTFPFEETEDQKNAISAVLTDMQSPQAMDRLVC 636

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQH+E  K    N  + VE+++   
Sbjct: 637 GDVGFGKTEVAMRAAFVAVNEGKQVAILVPTTLLAQQHFENFKDRFANIAVEVEVLSRFK 696

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +   LE++A+GQ  I+IGTH L Q SI++  L L+IVDE+HRFGV+Q+ K+     
Sbjct: 697 TTKEQNVVLEKLANGQVDIVIGTHKLIQPSIKFKDLGLLIVDEEHRFGVRQKEKIKSLRA 756

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT +    R  E   + + +L
Sbjct: 757 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV----RKGEDDLKREAIL 812

Query: 480 SE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
            E   G + Y++   +E  EK  ++   +V           +SI   HG+M + + E +M
Sbjct: 813 REIKRGGQVYYLHNNVETIEKVAADLAVLVPE---------ASITTAHGQMRESELEHLM 863

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F +    +L+ TT+IE GIDV  A+ III+ A+  GLAQLHQLRGRVGR    +   L
Sbjct: 864 AEFYHKKYNVLVCTTIIETGIDVPTANTIIIDRADKLGLAQLHQLRGRVGRSHHQAYAYL 923

Query: 595 LYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           L   P  +SK++  RL  +++ ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 924 LIPDPKGISKDATKRLEAIESLEDLGAGFALATHDLEIRGAGELLGDDQSG 974


>gi|328945180|gb|EGG39335.1| transcription-repair coupling factor [Streptococcus sanguinis SK1087]
          Length = 1167

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/439 (35%), Positives = 242/439 (55%), Gaps = 28/439 (6%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I L   R Q K   G   + +    ++   + P+  T+ Q  +I+++ +DM     M R+
Sbjct: 584  IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY   K+   +  + VE+++ 
Sbjct: 641  LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               +A +++ LE++  GQ  IIIGTH L    +++  L L+I+DE+ RFGV+ + KL + 
Sbjct: 701  FRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKEKLKEL 760

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475
                 VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   I E + R 
Sbjct: 761  KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819

Query: 476  KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
               +  G + Y++  +++  E+K S  R ++           +SI  +HG+MS+I  E+ 
Sbjct: 820  --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR   I+   
Sbjct: 869  LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928

Query: 594  LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +   
Sbjct: 929  LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986

Query: 649  PELHDSLLE--IARKDAKH 665
             E++  LLE  IA+K  + 
Sbjct: 987  FEMYSQLLEEAIAKKQGRE 1005


>gi|317047729|ref|YP_004115377.1| transcription-repair coupling factor [Pantoea sp. At-9b]
 gi|316949346|gb|ADU68821.1| transcription-repair coupling factor [Pantoea sp. At-9b]
          Length = 1147

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 150/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q      PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCEGFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENSK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  I +E+++       + + LE+ A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPIRIEMLSRFRSAKEQNQVLEQAAEGKVDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L    ++++ L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLMSDLKWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREVLRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                +R   L     + IAI HG+M + D E VM+ F +    +L+ TT+IE GIDV  
Sbjct: 822 IEKAAQRLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDVPS 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965


>gi|307264008|ref|ZP_07545608.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306870619|gb|EFN02363.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 1149

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/380 (39%), Positives = 218/380 (57%), Gaps = 19/380 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ 
Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+
Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 722

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +Q+  L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I
Sbjct: 723 DVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVI 782

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
              PA R  IKT    + + D++I + + +L E   G + Y++   +     +   +   
Sbjct: 783 ASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYYLHNDV-----ATIENCAT 833

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +   L     + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ III
Sbjct: 834 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  PP  L+K++  RL   S + N   GF++
Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVL 951

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG +QSG
Sbjct: 952 ATHDLEIRGAGELLGAEQSG 971


>gi|165976764|ref|YP_001652357.1| transcription repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876865|gb|ABY69913.1| transcription repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 1149

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/380 (39%), Positives = 218/380 (57%), Gaps = 19/380 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ 
Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+
Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 722

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +Q+  L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I
Sbjct: 723 DVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVI 782

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
              PA R  IKT    + + D++I + + +L E   G + Y++   +     +   +   
Sbjct: 783 ASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYYLHNDV-----ATIENCAT 833

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +   L     + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ III
Sbjct: 834 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  PP  L+K++  RL   S + N   GF++
Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVL 951

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG +QSG
Sbjct: 952 ATHDLEIRGAGELLGAEQSG 971


>gi|290579532|ref|YP_003483924.1| putative transcription-repair coupling factor [Streptococcus mutans
           NN2025]
 gi|254996431|dbj|BAH87032.1| putative transcription-repair coupling factor [Streptococcus mutans
           NN2025]
          Length = 1162

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 145/399 (36%), Positives = 224/399 (56%), Gaps = 21/399 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   + + K  ++   +  +  T+ Q  +IK++ +DM +   M R+L GDVG GKT VA+
Sbjct: 591 GFAFSPDDKNQEEFDNDFAYVETEDQLRSIKEVKKDMEKDQPMDRLLVGDVGFGKTEVAM 650

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV    Q  ++ P  +LAQQHY   K+  +N  + V +++    +  + + L ++
Sbjct: 651 RAAFKAVNDDKQVAVLVPTTVLAQQHYNTFKERFENFPVNVAMMSRFKTKTEQSETLTKL 710

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A GQ  IIIGTH L    + + +L L+++DE+ RFGV+ +  L +  T   VL +TATPI
Sbjct: 711 AKGQVDIIIGTHRLLSKDVTFKELGLLVIDEEQRFGVKHKETLKELKTKVDVLTLTATPI 770

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489
           PRTL ++ LG  D+S I   P+ R P++T ++  N   I E I R    +  G + ++I 
Sbjct: 771 PRTLHMSMLGIRDLSVIETPPSNRYPVQTYVMETNASVIREAIMR---EIDRGGQIFYIY 827

Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +++  +KK +  R ++   N         I  +HG+MS+I  E+ +  F +G   LL+ 
Sbjct: 828 NRVDTIDKKVAELRELIPEAN---------IGFVHGKMSEIQLENTLLDFISGEYDLLVT 878

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605
           TT+IE GID+ + + + IENA++ GL+ L+QLRGRVGR   I+   L+YHP   L++ S 
Sbjct: 879 TTIIETGIDISNVNTLFIENADYMGLSTLYQLRGRVGRSNRIAYAYLMYHPDKILTEVSE 938

Query: 606 TRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641
            RL  +K  TE   GF IA  DL  R  G ILG  QSG 
Sbjct: 939 KRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSSQSGF 977


>gi|307250599|ref|ZP_07532540.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857340|gb|EFM89455.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 1149

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/380 (39%), Positives = 218/380 (57%), Gaps = 19/380 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ 
Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+
Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 722

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +Q+  L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I
Sbjct: 723 DVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVI 782

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
              PA R  IKT    + + D++I + + +L E   G + Y++   +     +   +   
Sbjct: 783 ASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYYLHNDV-----ATIENCAT 833

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +   L     + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ III
Sbjct: 834 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  PP  L+K++  RL   S + N   GF++
Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVL 951

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG +QSG
Sbjct: 952 ATHDLEIRGAGELLGAEQSG 971


>gi|297622390|ref|YP_003703824.1| transcription-repair coupling factor [Truepera radiovictrix DSM
           17093]
 gi|297163570|gb|ADI13281.1| transcription-repair coupling factor [Truepera radiovictrix DSM
           17093]
          Length = 1006

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/433 (36%), Positives = 240/433 (55%), Gaps = 29/433 (6%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMR----KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           EW   ARER     + A ++AL L+R    +Q ++ + +P N E      I  N PF  T
Sbjct: 421 EWAR-ARERA---RVGAQELALKLIRTYAERQLQQGLAMPANPEWD--PLIDENCPFELT 474

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q+SA + +L DM++   M R++ GDVG GKT VA+ A   AV  G Q  ++ P  +LA
Sbjct: 475 PDQKSATQAVLHDMARPVPMDRLISGDVGFGKTEVAIRAAHRAVGHGKQVAMLVPTTVLA 534

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH+E   +      ++VE+++        R  L  +  G   ++IGTH L  + + +  
Sbjct: 535 KQHFETFAERFAGLPVVVELLSRFSTDKEARDILAGLKAGTIDVVIGTHRLLSEEVAFKD 594

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+IVDE+HRFGV Q+ ++        VL ++ATPIPRTL ++ +G  D+S+I   PAG
Sbjct: 595 LGLLIVDEEHRFGVGQKERMKAMKANLDVLSLSATPIPRTLYMSLVGLRDVSQIMTPPAG 654

Query: 455 RKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEE--KKESNFRSVVERFNSL 510
           RKPI+TV+ P    D ++ R  V+  L  G K ++I  ++     K    + +V      
Sbjct: 655 RKPIQTVLQP---FDPMVAREAVMFELERGGKVFYIHDRVGSMGAKALWLQKLVPE---- 707

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + I + HG+MS  + E VM +F+ G   +L+ATT++E G+DV  A+ ++IE A+ 
Sbjct: 708 -----ARIGVAHGQMSGDELEEVMLNFQGGAYDVLLATTIVESGLDVAGANTLLIERADK 762

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            GLAQL+QLRGRVGR    +   LLY   L++ +  RL  L    D   G L+AE+D++ 
Sbjct: 763 LGLAQLYQLRGRVGRRSTEAWAYLLYPGRLTEGAQRRLFALAELNDLGSGHLLAEKDMEI 822

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +Q G
Sbjct: 823 RGVGNLLGPEQHG 835


>gi|227357767|ref|ZP_03842116.1| transcription-repair coupling factor [Proteus mirabilis ATCC 29906]
 gi|227162096|gb|EEI47110.1| transcription-repair coupling factor [Proteus mirabilis ATCC 29906]
          Length = 1151

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/382 (39%), Positives = 217/382 (56%), Gaps = 19/382 (4%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           ++ PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   A+    Q  I
Sbjct: 594 QSFPFETTPDQEMAINAVLSDMCQAIAMDRLVCGDVGFGKTEVAMRAAFLAISNNKQVAI 653

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  +LAQQH+E  +    N  + +E+I+       +++  E++A G   I+IGTH L 
Sbjct: 654 LVPTTLLAQQHFENFRDRFANWPVNIEMISRFRSAKEQQQITEKLAEGTIDIVIGTHKLL 713

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           Q  IQ+  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S
Sbjct: 714 QPGIQWKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 773

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSV 503
            I   PA R  +KT    +   D+++ R + +L E   G + Y++   +E     N    
Sbjct: 774 IIATPPARRLSVKTF---VREYDDLVVR-EAILRETLRGGQVYYLYNDVE-----NIEKA 824

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +R   L     + I I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ I
Sbjct: 825 RDRLAQLVPE--ARIGIGHGQMRERELERVMNDFHHQRFNVLLCTTIIETGIDIPSANTI 882

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618
           IIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++K+++ RL  + + ED   GF
Sbjct: 883 IIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAHKRLEAIASLEDLGAGF 942

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 943 ALATHDLEIRGAGELLGEEQSG 964


>gi|197284762|ref|YP_002150634.1| transcription-repair coupling factor [Proteus mirabilis HI4320]
 gi|194682249|emb|CAR41979.1| transcription-repair coupling factor [Proteus mirabilis HI4320]
          Length = 1151

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/382 (39%), Positives = 217/382 (56%), Gaps = 19/382 (4%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           ++ PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   A+    Q  I
Sbjct: 594 QSFPFETTPDQEMAINAVLSDMCQAIAMDRLVCGDVGFGKTEVAMRAAFLAISNNKQVAI 653

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  +LAQQH+E  +    N  + +E+I+       +++  E++A G   I+IGTH L 
Sbjct: 654 LVPTTLLAQQHFENFRDRFANWPVNIEMISRFRSAKEQQQITEKLAEGTIDIVIGTHKLL 713

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           Q  IQ+  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S
Sbjct: 714 QPGIQWKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 773

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSV 503
            I   PA R  +KT    +   D+++ R + +L E   G + Y++   +E     N    
Sbjct: 774 IIATPPARRLSVKTF---VREYDDLVVR-EAILRETLRGGQVYYLYNDVE-----NIEKA 824

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +R   L     + I I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ I
Sbjct: 825 RDRLAQLVPE--ARIGIGHGQMRERELERVMNDFHHQRFNVLLCTTIIETGIDIPSANTI 882

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618
           IIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++K+++ RL  + + ED   GF
Sbjct: 883 IIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAHKRLEAIASLEDLGAGF 942

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 943 ALATHDLEIRGAGELLGEEQSG 964


>gi|94989515|ref|YP_597615.1| transcription-repair coupling factor [Streptococcus pyogenes
            MGAS10270]
 gi|94543023|gb|ABF33071.1| Transcription-repair coupling factor [Streptococcus pyogenes
            MGAS10270]
          Length = 1167

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/441 (35%), Positives = 240/441 (54%), Gaps = 25/441 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  +  ++ G   + +  + +    +  F  T+ Q  +IK+I  DM     M R+L 
Sbjct: 579  LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY+  K   +N  + V++++   
Sbjct: 639  GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYKNFKARFENYPVEVDVLSRFR 698

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             +  + + LER+  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 699  SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R   
Sbjct: 759  KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815

Query: 478  VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +  G + +++  +++  EKK +  + +V           +SI  +HG+MS+I  E+ + 
Sbjct: 816  EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             F NG   +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 867  DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926

Query: 596  YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E
Sbjct: 927  YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984

Query: 651  LHDSLLE--IARKDAKHILTQ 669
            ++  LLE  IA K  K  + Q
Sbjct: 985  MYSQLLEQAIASKQGKTTVRQ 1005


>gi|242239055|ref|YP_002987236.1| transcription-repair coupling factor [Dickeya dadantii Ech703]
 gi|242131112|gb|ACS85414.1| transcription-repair coupling factor [Dickeya dadantii Ech703]
          Length = 1147

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/386 (38%), Positives = 212/386 (54%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +  PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 589 QLFCQRFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 648

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++    Q  + + LE    G+  I+IGT
Sbjct: 649 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSQREQTQVLEETQEGKVDILIGT 708

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  + +  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +     
Sbjct: 709 HKLLQSDVHWRDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMHNI 768

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 769 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 819

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                +R   L     + IAI HG+M + D E VM+ F +    +L+ TT+IE GID+  
Sbjct: 820 IGKAAQRLGELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 877

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL   P  +S +++ RL  + + ED 
Sbjct: 878 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKTMSADAHKRLEAIASLEDL 937

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 938 GAGFALATHDLEIRGAGELLGEDQSG 963


>gi|325689360|gb|EGD31366.1| transcription-repair coupling factor [Streptococcus sanguinis SK115]
          Length = 1167

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 155/439 (35%), Positives = 241/439 (54%), Gaps = 28/439 (6%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I L   R Q K   G   + +    ++   + P+  T+ Q  +I+++ +DM     M R+
Sbjct: 584  IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY   K+   +  + VE+++ 
Sbjct: 641  LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               +A +++ L+++  GQ  IIIGTH L    +++  L L+I+DE+ RFGV+ +  L + 
Sbjct: 701  FRSKAEQKQTLDKLQRGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475
                 VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   I E + R 
Sbjct: 761  KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819

Query: 476  KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
               +  G + Y++  +++  E+K S  R ++           +SI  +HG+MS+I  E+ 
Sbjct: 820  --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR   I+   
Sbjct: 869  LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928

Query: 594  LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +   
Sbjct: 929  LIYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986

Query: 649  PELHDSLLE--IARKDAKH 665
             E++  LLE  IA+K  + 
Sbjct: 987  FEMYSQLLEEAIAKKQGRE 1005


>gi|260597486|ref|YP_003210057.1| transcription-repair coupling factor [Cronobacter turicensis z3032]
 gi|260216663|emb|CBA29998.1| Transcription-repair-coupling factor [Cronobacter turicensis z3032]
          Length = 1167

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q      PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 610 QLFCEGFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNK 669

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    N  + +E+++       + + LE+ A G+  I+IGT
Sbjct: 670 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIELLSRFRSAKEQAQVLEQAADGKVDILIGT 729

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 730 HKLLQSDVKMKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 789

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 790 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREVLRGGQVYYLYNDVE-----N 840

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER  +L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 841 IQKAAERLANLVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 898

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  PP  ++ ++  RL  + + ED 
Sbjct: 899 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPPPKAMTTDAQKRLEAIASLEDL 958

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 959 GAGFALATHDLEIRGAGELLGEDQSG 984


>gi|218461103|ref|ZP_03501194.1| ATP-dependent DNA helicase RecG [Rhizobium etli Kim 5]
          Length = 194

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 114/183 (62%), Positives = 148/183 (80%)

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I +IHGRMS  +K++ M +FKNG  +LL+AT+V+EVG+DV DA+I++IE+AE FGLAQLH
Sbjct: 12  IGLIHGRMSGPEKDAAMMAFKNGESRLLVATSVVEVGVDVPDATIMVIEHAERFGLAQLH 71

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG+E S+CILLY  PL +  + RLS+++ TEDGF IAEEDLK R EGE+LG +
Sbjct: 72  QLRGRVGRGDEASTCILLYKGPLGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTR 131

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
           QSG P F IA  E H  LLEIARKDA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+
Sbjct: 132 QSGTPGFRIASLEAHADLLEIARKDAAYLIERDPELTSDRGQAIRTLLYLFRRDEAIRFL 191

Query: 698 RAG 700
           RAG
Sbjct: 192 RAG 194


>gi|145298863|ref|YP_001141704.1| transcription-repair coupling factor [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851635|gb|ABO89956.1| transcription-repair coupling factor [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 1154

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 150/382 (39%), Positives = 210/382 (54%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T+ Q +AI  +L DM Q   M R++ GDVG GKT VA+ A   AV  G Q  ++
Sbjct: 602 GFPFEETEDQLNAINAVLGDMCQAKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAVL 661

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY+  +    N  + VE+++       +   ++ +A G+  IIIGTH L  
Sbjct: 662 VPTTLLAQQHYDNFRDRFANWPVRVEVLSRFRTAREQTSVMKELADGKVDIIIGTHKLLG 721

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             + +  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 722 SDLTFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMAGMRDLSI 781

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  IKT    + + D  + R  V+  L  G + Y++   +E  EK   +   +
Sbjct: 782 IATPPAKRLAIKTF---VRQQDPAVTREAVLRELKRGGQVYYLHNDVESIEKCAGDLAEL 838

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V           + I I HG+M + D E VM  F +    LL+ T++IE GIDV  A+ I
Sbjct: 839 VPE---------ARIGIAHGQMRERDLERVMSDFYHQRFNLLVCTSIIETGIDVPSANTI 889

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPL-SKNSYTRLSVLKNTED---GF 618
           I++ A+H GLAQLHQLRGRVGR    +   LL  HP L SK++  RL  + + ED   GF
Sbjct: 890 IMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKLMSKDALKRLEAIASLEDLGAGF 949

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG  QSG
Sbjct: 950 ALATHDLEIRGAGELLGDDQSG 971


>gi|139472894|ref|YP_001127609.1| transcription-repair coupling factor [Streptococcus pyogenes str.
            Manfredo]
 gi|134271140|emb|CAM29350.1| putative transcription-repair coupling factor [Streptococcus pyogenes
            str. Manfredo]
          Length = 1167

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 157/441 (35%), Positives = 239/441 (54%), Gaps = 25/441 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  +  ++ G   + +  + +    +  F  T+ Q  +IK+I  DM     M R+L 
Sbjct: 579  LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K   +N  + V++++   
Sbjct: 639  GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYLVEVDVLSRFR 698

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             +  + + LE +  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 699  SKKEQAETLEHVQKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R   
Sbjct: 759  KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815

Query: 478  VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +  G + +++  +++  EKK +  + +V           +SI  +HG+MS+I  E+ + 
Sbjct: 816  EMDRGGQIFYVYNKVDTIEKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             F NG   +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 867  DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926

Query: 596  YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E
Sbjct: 927  YRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984

Query: 651  LHDSLLE--IARKDAKHILTQ 669
            ++  LLE  IA K  K  + Q
Sbjct: 985  MYSQLLEQAIASKQGKTTVRQ 1005


>gi|325578622|ref|ZP_08148722.1| transcription-repair coupling factor [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325159858|gb|EGC71988.1| transcription-repair coupling factor [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 1149

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 152/415 (36%), Positives = 234/415 (56%), Gaps = 21/415 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A ++  +  +++ KK  G     + +  Q+     PF  T  Q  AI  ++ DM Q   
Sbjct: 569 VAAELLDVYAQREVKK--GFEFKYDREEFQQFAATFPFEETHDQAMAINAVISDMCQPKA 626

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE
Sbjct: 627 MDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVE 686

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +++       +++ LE +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K
Sbjct: 687 VLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKFSDLGLLIIDEEHRFGVGQKEK 746

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           + Q      +L +TATPIPRTL +   G  D+S I   PA R  IKT    + + D++I 
Sbjct: 747 IKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIIATPPARRVSIKTF---VRQKDDLII 803

Query: 474 RLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           R + +L E   G + Y++   +     ++  +  E+  +L     + + I HG+M + + 
Sbjct: 804 R-EAILREILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVVIGHGQMREREL 855

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E VM  F +    +L+ +T+IE GIDV  A+ IIIE A++FGLAQLHQLRGRVGR    +
Sbjct: 856 ERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQA 915

Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
              LL  PP  ++K++  RL  L++ ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 916 YAYLLTPPPKLMTKDAKRRLEALESLDNLGAGFILATHDLEIRGAGELLGNEQSG 970


>gi|225869494|ref|YP_002745441.1| transcription-repair coupling factor [Streptococcus equi subsp.
           equi 4047]
 gi|225698898|emb|CAW91884.1| putative transcription-repair coupling factor [Streptococcus equi
           subsp. equi 4047]
          Length = 1164

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 147/411 (35%), Positives = 229/411 (55%), Gaps = 21/411 (5%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  +  ++ G   + + ++ +    +  F  T  Q  +IK++ +DM     M R+L 
Sbjct: 579 LLKLYAERSQQKGFQFSPDDELQRAFEEDFAFVETDDQVRSIKEVKKDMESVRPMDRLLV 638

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   A+    Q  I+ P  +LAQQHYE  ++  +N  + + +++   
Sbjct: 639 GDVGFGKTEVAMRAAFKAIGDHKQVAILVPTTVLAQQHYENFRERFENYPVEIAVLSRFR 698

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            +  + ++LER+  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 699 SKKEQSESLERLKKGQVDIIIGTHRLLSKDVIFSDLGLIVIDEEQRFGVKHKETLKELKT 758

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
              VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   I E I R   
Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLIREAIIR--- 815

Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            +  G + +++  +++  +KK +  + +V           +SI  +HG+MSDI  E+ + 
Sbjct: 816 EMDRGGQVFYVYNKVDTVDKKVAELQELVPE---------ASIGFVHGQMSDIQLENTLM 866

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F NG   +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926

Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641
           Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG 
Sbjct: 927 YKPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGF 977


>gi|225867624|ref|YP_002743572.1| transcription-repair coupling factor [Streptococcus equi subsp.
           zooepidemicus]
 gi|225700900|emb|CAW97563.1| putative transcription-repair coupling factor [Streptococcus equi
           subsp. zooepidemicus]
          Length = 1164

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 147/411 (35%), Positives = 229/411 (55%), Gaps = 21/411 (5%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  +  ++ G   + + ++ +    +  F  T  Q  +IK++ +DM     M R+L 
Sbjct: 579 LLKLYAERSQQKGFQFSPDDELQKAFEEDFAFVETDDQVRSIKEVKKDMESIKPMDRLLV 638

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   A+    Q  I+ P  +LAQQHYE  ++  +N  + + +++   
Sbjct: 639 GDVGFGKTEVAMRAAFKAIGDHKQVAILVPTTVLAQQHYENFRERFENYPVEIAVLSRFR 698

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            +  + ++LER+  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 699 SKKEQSESLERLKKGQVDIIIGTHRLLSKDVIFSDLGLIVIDEEQRFGVKHKETLKELKT 758

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
              VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   I E I R   
Sbjct: 759 KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLIREAIIR--- 815

Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            +  G + +++  +++  +KK +  + +V           +SI  +HG+MSDI  E+ + 
Sbjct: 816 EMDRGGQVFYVYNKVDTIDKKVAELQELVPE---------ASIGFVHGQMSDIQLENTLM 866

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F NG   +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 867 DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926

Query: 596 YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641
           Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG 
Sbjct: 927 YKPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGF 977


>gi|332359490|gb|EGJ37309.1| transcription-repair coupling factor [Streptococcus sanguinis SK1056]
          Length = 1167

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 155/439 (35%), Positives = 240/439 (54%), Gaps = 28/439 (6%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I L   R Q K   G   + +    ++   + P+  T+ Q  +I+++ +DM     M R+
Sbjct: 584  IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY   K+   +  + VE+++ 
Sbjct: 641  LVGDVGFGKTEVAMRAAFKAVNNHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               +A +++ L+++  GQ  IIIGTH L    +++  L L+I+DE+ RFGV+ +  L + 
Sbjct: 701  FRSKAEQKQTLDKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475
                 VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   I E + R 
Sbjct: 761  KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819

Query: 476  KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
               +  G + Y++  +++  E+K S  R ++            SI  +HG+MS+I  E+ 
Sbjct: 820  --EIDRGGQVYYLYNKVDTIEQKVSELRELIPEV---------SIGYVHGQMSEIRLENT 868

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H GL+ L+QLRGRVGR   I+   
Sbjct: 869  LLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928

Query: 594  LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +   
Sbjct: 929  LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986

Query: 649  PELHDSLLE--IARKDAKH 665
             E++  LLE  IA+K  + 
Sbjct: 987  FEMYSQLLEEAIAKKQGRE 1005


>gi|322515432|ref|ZP_08068423.1| transcription-repair coupling factor [Actinobacillus ureae ATCC
           25976]
 gi|322118555|gb|EFX90788.1| transcription-repair coupling factor [Actinobacillus ureae ATCC
           25976]
          Length = 1162

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 146/380 (38%), Positives = 219/380 (57%), Gaps = 19/380 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ 
Sbjct: 616 FPFEETEDQKTAINAVISDMRLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 675

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+
Sbjct: 676 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 735

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +Q+  L L+++DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I
Sbjct: 736 DVQFRDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSII 795

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
              PA R  IKT    + + D+++ R + +L E   G + Y++   +     +   +   
Sbjct: 796 ASPPARRLTIKTF---VRQHDDLVVR-EAILREILRGGQVYYLHNDV-----ATIENCAT 846

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +   L     + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ III
Sbjct: 847 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 904

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620
           + A+ FGLAQLHQLRGRVGR    +   LL  PP  L+K++  RL  L + ++   GF++
Sbjct: 905 DRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKTLTKDAQQRLEALSSIDNLGAGFVL 964

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG +QSG
Sbjct: 965 ATHDLEIRGAGELLGSEQSG 984


>gi|329297178|ref|ZP_08254514.1| transcription-repair coupling factor [Plautia stali symbiont]
          Length = 1147

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 151/409 (36%), Positives = 220/409 (53%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q      PF  T  Q  AI  +L DM Q   M R++ 
Sbjct: 568 LLGIYAQRAAKAGFAFKHDREQYQLFCEGFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+     AVE G Q  ++ P  +LAQQHY+  +    N  + +E+++   
Sbjct: 628 GDVGFGKTEVAMRVAFLAVENGKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + + LE+ + G+  I+IGTH L    +++  L L+IVDE+HRFGV+ + ++     
Sbjct: 688 SAKEQAQVLEQASEGRIDILIGTHKLLMSDLKWRDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAIL 803

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N     +R   L     + IAI HG+M + D E +M+ 
Sbjct: 804 REVLRGGQVYYLYNDVE-----NIEKAAQRLAELVPE--ARIAIGHGQMRERDLERMMND 856

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GIDV  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 857 FHHQRFNVLVCTTIIETGIDVPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 917 PPPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965


>gi|120554850|ref|YP_959201.1| transcription-repair coupling factor [Marinobacter aquaeolei VT8]
 gi|120324699|gb|ABM19014.1| transcription-repair coupling factor [Marinobacter aquaeolei VT8]
          Length = 1173

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 145/384 (37%), Positives = 219/384 (57%), Gaps = 25/384 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q+ AI+ + +DM+ +  M R++ GDVG GKT VA+ A   A  +G Q  ++
Sbjct: 617 GFPFEETPDQQVAIESVFEDMTSERPMDRLVCGDVGFGKTEVAMRAAFLATWSGKQVAVL 676

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHYE  +    +T + VE+++     +   KA+  I  G+A I+IGTH L Q
Sbjct: 677 VPTTLLAQQHYESFRDRFSDTPVTVELLSRFRSGSQTSKAITAIEEGKADIVIGTHKLLQ 736

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DIS 446
             I +  L LVI+DE+HRFGVQQ+ KL        +L +TATPIPRTL + ++G + D+S
Sbjct: 737 GDINFKNLGLVIIDEEHRFGVQQKEKLKSLRAEVDMLTLTATPIPRTLNM-AMGHLRDLS 795

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFR 501
            I   PA R  +KT +    R D +++  + +L E   G + Y++   +   EK   + R
Sbjct: 796 IIATPPARRLSVKTFV--RQRDDAMVK--EAILREILRGGQVYFLHNDVATIEKTAEDLR 851

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++           + + + HG+M +   E +M  F +    +L+ TT++E GID+  A+
Sbjct: 852 KLIPE---------ARVGVAHGQMRERQLEQIMSDFYHKRFNVLVCTTIVETGIDIPSAN 902

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED--- 616
            IIIE A+ FGLAQLHQLRGRVGR    +   LL  PP  +S ++  RL  +  ++D   
Sbjct: 903 TIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAISADARKRLDAISESQDLGA 962

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF++A  DL+ R  GE+LG +QSG
Sbjct: 963 GFMLATHDLEIRGAGELLGEEQSG 986


>gi|56460626|ref|YP_155907.1| transcription-repair coupling factor [Idiomarina loihiensis L2TR]
 gi|56179636|gb|AAV82358.1| Transcription-repair coupling factor, superfamily II helicase
           [Idiomarina loihiensis L2TR]
          Length = 1160

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 149/417 (35%), Positives = 232/417 (55%), Gaps = 25/417 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A ++  +  R++ K   G   N+  +  Q+     PF  T  Q++AI  + QDM Q   
Sbjct: 575 VAAELLDIYARREAKP--GYAFNINEEDYQRFAAGFPFEETIDQQTAIDAVKQDMQQPRA 632

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   AV  G Q +++ P  +LAQQHYE       +  I VE
Sbjct: 633 MDRLVCGDVGFGKTEVAMRAAFIAVNEGKQVMVLVPTTLLAQQHYENFSDRFADQAIRVE 692

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +++        +  LE +++G+  I+IGTH L QD+++ + L L+IVDE+HRFGV+Q+  
Sbjct: 693 VLSRFKTAKQSKGILEDLSNGKVDIVIGTHKLLQDNVKCHDLGLLIVDEEHRFGVRQKDT 752

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           + +      +L +TATPIPRTL +      D+S I   PA R  +KT    +   DE   
Sbjct: 753 IKRLRADVDILTLTATPIPRTLNMAMNNIRDLSIIATPPAKRLAVKTF---VREYDEPTV 809

Query: 474 RLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
           R + +L E   G + Y++   ++  EK  ++  ++V           + + + HG+M + 
Sbjct: 810 R-EAILREILRGGQVYFLHNNVDTIEKTAADIEALVPE---------ARVVVAHGQMRER 859

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D E +M  F +    +L+ TT+IE GID+  A+ II++ A+H GLAQ+HQLRGRVGR   
Sbjct: 860 DLERIMSDFYHQRFNVLVCTTIIETGIDIPSANTIIMDRADHLGLAQMHQLRGRVGRSHH 919

Query: 589 ISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            +   LL  HP  ++K+++ RL  +   ED   GF++A  DL+ R  GE+LG  QSG
Sbjct: 920 QAYAYLLTPHPKRMTKDAHKRLEAISQLEDLGAGFMLATHDLEIRGAGELLGDDQSG 976


>gi|327463840|gb|EGF10156.1| transcription-repair coupling factor [Streptococcus sanguinis SK1057]
          Length = 1167

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 154/439 (35%), Positives = 241/439 (54%), Gaps = 28/439 (6%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I L   R Q K   G   + +    ++   + P+  T+ Q  +I+++ +DM     M R+
Sbjct: 584  IKLYAERSQLK---GFAFSADDSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRPMDRL 640

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY   K+   +  + VE+++ 
Sbjct: 641  LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYTNFKERFNDFAVNVEVLSR 700

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               +A +++ L+++  GQ  IIIGTH L    +++  L L+I+DE+ RFGV+ +  L + 
Sbjct: 701  FRSKAEQKQTLDKLQKGQVDIIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKETLKEL 760

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475
                 VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   I E + R 
Sbjct: 761  KKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLR- 819

Query: 476  KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
               +  G + Y++  +++  E+K S  R ++           +SI  +HG+MS+I  E+ 
Sbjct: 820  --EIDRGGQVYYLYNKVDTIEQKVSELRELIPE---------ASIGYVHGQMSEIRLENT 868

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            +  F NG   +L+ TT+IE G+D+ +++ + +ENA+H GL+ L+QLRGRVGR   I+   
Sbjct: 869  LLDFINGEYDILVTTTIIETGVDIPNSNTLFVENADHMGLSTLYQLRGRVGRSNRIAYAY 928

Query: 594  LLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +   
Sbjct: 929  LMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGSMQSGFIDSV--G 986

Query: 649  PELHDSLLE--IARKDAKH 665
             E++  LLE  IA+K  + 
Sbjct: 987  FEMYSQLLEEAIAKKQGRE 1005


>gi|297832728|ref|XP_002884246.1| hypothetical protein ARALYDRAFT_477305 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330086|gb|EFH60505.1| hypothetical protein ARALYDRAFT_477305 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 823

 Score =  241 bits (614), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 145/381 (38%), Positives = 223/381 (58%), Gaps = 17/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             P++ T  Q+ A  D+ +D++++   M R++ GDVG GKT VAL A+   V AG QA++
Sbjct: 265 QFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 324

Query: 327 MAPIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +AP  +LA+QHY+ I ++++   QI V +++    +A + + LE I  G  +II+GTH+L
Sbjct: 325 LAPTIVLAKQHYDVISERFSLYPQIKVGLLSRFQTKAEKEEYLEMIKDGHLNIIVGTHSL 384

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               + Y  L L++VDE+ RFGV+Q+ K+    T+  VL ++ATPIPRTL L   G  D 
Sbjct: 385 LGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDA 444

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I+  P  R PIKT +    R ++VIE +K  L  G + +++ P+I        + + E
Sbjct: 445 SLISTPPPERIPIKTHLSSF-RKEKVIEAIKNELDRGGQVFYVLPRI--------KGLEE 495

Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             + L E F    IA+ HG+      E  M+ F  G  K+LI T ++E G+D+ +A+ II
Sbjct: 496 VMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTII 555

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619
           I++ + FGLAQL+QLRGRVGR ++ +   L Y     LS  +  RLS L+   +   GF 
Sbjct: 556 IQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQ 615

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +AE D+  R  G I G +Q+G
Sbjct: 616 LAERDMGIRGFGTIFGEQQTG 636


>gi|271500156|ref|YP_003333181.1| transcription-repair coupling factor [Dickeya dadantii Ech586]
 gi|270343711|gb|ACZ76476.1| transcription-repair coupling factor [Dickeya dadantii Ech586]
          Length = 1150

 Score =  240 bits (613), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 151/409 (36%), Positives = 222/409 (54%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q     G     + +  Q   +  PF  T  Q  AI  +L DM +   M R++ 
Sbjct: 569 LLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFDTTPDQAQAINAVLSDMCRPLAMDRLVC 628

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQH++  +    N  + +E+++   
Sbjct: 629 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFR 688

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            Q  + + LE+   G+  I+IGTH L Q  +++  L L+IVDE+HRFGV+ + ++     
Sbjct: 689 SQKEQTQVLEQTQEGKVDILIGTHKLLQSDVRWRDLGLLIVDEEHRFGVRHKERIKAMRA 748

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 749 NVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLAVKTF---VREYDNLVVR-EAML 804

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N     +R + L     + IAI HG+M + D E VM+ 
Sbjct: 805 REILRGGQVYYLYNDVE-----NIEKAAQRLSELVPE--ARIAIGHGQMRERDLERVMND 857

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 858 FHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 917

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             P  +S +++ RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 918 PNPKAMSSDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 966


>gi|170717838|ref|YP_001784898.1| transcription-repair coupling factor [Haemophilus somnus 2336]
 gi|168825967|gb|ACA31338.1| transcription-repair coupling factor [Haemophilus somnus 2336]
          Length = 1144

 Score =  240 bits (613), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 151/415 (36%), Positives = 238/415 (57%), Gaps = 21/415 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A ++  +  +++ KK  G     + +  ++     PF  T  Q+ AI  ++ DM QK  
Sbjct: 565 VAAELLDVYAQREVKK--GFAFQYDKEEFKQFAATFPFEETPDQKMAINAVISDMCQKKA 622

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE
Sbjct: 623 MDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVE 682

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +++       +++ L+ +  G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K
Sbjct: 683 MLSRFRTAKEQKQILQHLNEGKIDILIGTHKLIQSEVKFSDLGLLIIDEEHRFGVSQKEK 742

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           + Q  T   +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + ++D++I 
Sbjct: 743 IKQLRTNIDILTLTATPIPRTLNMAMSGIRDLSIISTPPARRLSIKTF---VRQVDDLII 799

Query: 474 RLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           R + VL E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + 
Sbjct: 800 R-EAVLREILRGGQVYYLHNDV-----ASIENCAEKLTALVPE--ARVVVGHGQMREREL 851

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E VM  F +    +L+ +T+IE GIDV  A+ IIIE A++FGLAQLHQLRGRVGR    +
Sbjct: 852 ERVMSDFYHQRFNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQA 911

Query: 591 SCILLY-HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
              LL  HP  ++K++  RL  L++ ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 912 YAYLLTPHPKAMTKDAVKRLEALESLDNLGAGFILATHDLEIRGAGELLGNEQSG 966


>gi|157370240|ref|YP_001478229.1| transcription-repair coupling factor [Serratia proteamaculans 568]
 gi|157322004|gb|ABV41101.1| transcription-repair coupling factor [Serratia proteamaculans 568]
          Length = 1176

 Score =  240 bits (613), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 152/411 (36%), Positives = 223/411 (54%), Gaps = 23/411 (5%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q   +  PF  T  QE AI  +L DM Q   M R++ 
Sbjct: 595 LLDIYAQRAAKTGFAFKHDREQYQLFCQAFPFETTPDQEQAINAVLSDMCQPLAMDRLVC 654

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AVE G Q  ++ P  +LAQQH++  +       I +E+++   
Sbjct: 655 GDVGFGKTEVAMRAAFLAVENGKQVAVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFR 714

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ ++    G+  IIIGTH L Q  +++  L L+IVDE+HRFGV+ + ++     
Sbjct: 715 SAKEQQQVMDDAVDGKVDIIIGTHKLLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRA 774

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 775 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAIL 830

Query: 480 SE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
            E   G + Y++   +E  EK  +    +V           + IAI HG+M + D E VM
Sbjct: 831 REVLRGGQVYYLYNDVENIEKAAAKLAELVPE---------ARIAIGHGQMRERDLERVM 881

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F +    +L+ TT+IE GID+  A+ IIIE A+ FGLAQLHQLRGRVGR    +   L
Sbjct: 882 NDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAYL 941

Query: 595 LYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           L  PP  +S +++ RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 942 LTPPPKAMSTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 992


>gi|238920223|ref|YP_002933738.1| transcription-repair coupling factor [Edwardsiella ictaluri 93-146]
 gi|238869792|gb|ACR69503.1| transcription-repair coupling factor, putative [Edwardsiella
           ictaluri 93-146]
          Length = 1153

 Score =  240 bits (613), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +  PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV +G 
Sbjct: 597 QLFCQGFPFETTADQAMAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVHSGK 656

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L     G+  I+IGT
Sbjct: 657 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQVLADTVDGKVDILIGT 716

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +Q+  L L+IVDE+HRFGV+Q+ ++        +L +TATPIPRTL +   G 
Sbjct: 717 HKLLQGDVQWRDLGLLIVDEEHRFGVRQKERIKAMRADVDILTLTATPIPRTLNMAMSGM 776

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   ++      
Sbjct: 777 RDLSIIATPPARRMAVKTF---VREYDSLVVR-EAILRETLRGGQVYYLYNDVD-----T 827

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   +R  +L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 828 IQKAADRLATLVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPS 885

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  PP  ++ ++  RL  + + ED 
Sbjct: 886 ANTIIIERADHFGLAQLHQLRGRVGRSYHQAYAYLLTPPPKAMTVDAQKRLEAIASLEDL 945

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 946 GAGFALATHDLEIRGAGELLGDDQSG 971


>gi|306834606|ref|ZP_07467718.1| transcription-repair coupling factor [Streptococcus bovis ATCC
            700338]
 gi|304423242|gb|EFM26396.1| transcription-repair coupling factor [Streptococcus bovis ATCC
            700338]
          Length = 1169

 Score =  240 bits (613), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 166/469 (35%), Positives = 255/469 (54%), Gaps = 33/469 (7%)

Query: 207  NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
            N +++ R  K  +  S   E +A D+LL     L   R Q K   G   + +  + ++  
Sbjct: 558  NKLNDGRFQKTKQKVSKQVEDIA-DDLLK----LYAERSQLK---GFAFSPDDDLQREFD 609

Query: 267  RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             +  F  T+ Q  +IK+I  DM +   M R+L GDVG GKT VA+ A   AV+   Q  +
Sbjct: 610  EDFAFVETEDQLRSIKEIKNDMEEDKPMDRLLVGDVGFGKTEVAMRAAFKAVKDHKQVAV 669

Query: 327  MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            + P  +LAQQHY    +  +N  + V++++    +  +   L+++  GQ  IIIGTH L 
Sbjct: 670  LVPTTVLAQQHYTNFSERFENYPVTVDVLSRFRSKKEQNDTLDKLKKGQVDIIIGTHRLL 729

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
               + +  L L+I+DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S
Sbjct: 730  SKDVDFADLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHISMLGIRDLS 789

Query: 447  KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRS 502
             I   P  R P++T ++  N   I E I R    +  G + +++  +++  ++K S  + 
Sbjct: 790  VIETPPTNRYPVQTYVLETNPGLIREAIIR---EIDRGGQVFYVYNRVDTIDQKVSELQE 846

Query: 503  VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +V           +SI  +HG+MS+I  E+ +  F +G   +L+ATT+IE G+D+ + + 
Sbjct: 847  LVPE---------ASIGFVHGQMSEIQLENTLMDFIDGVYDVLVATTIIETGVDISNVNT 897

Query: 563  IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DG 617
            + IENA+H GL+ L+QLRGRVGR   I+   L+YHP   L++ S  RL  +K  TE   G
Sbjct: 898  LFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYHPDKILTEVSEKRLDAIKGFTELGSG 957

Query: 618  FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAK 664
            F IA  DL  R  G ILG  QSG    +    E++  LLE  IA+K  K
Sbjct: 958  FKIAMRDLSIRGAGNILGASQSGFIDSV--GFEMYSQLLEEAIAKKQGK 1004


>gi|168484302|ref|ZP_02709254.1| transcription-repair coupling factor [Streptococcus pneumoniae
            CDC1873-00]
 gi|172042444|gb|EDT50490.1| transcription-repair coupling factor [Streptococcus pneumoniae
            CDC1873-00]
 gi|332198870|gb|EGJ12952.1| transcription-repair coupling factor [Streptococcus pneumoniae
            GA47368]
          Length = 1169

 Score =  240 bits (613), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLYMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|301156034|emb|CBW15505.1| transcription-repair coupling factor [Haemophilus parainfluenzae
           T3T1]
          Length = 1149

 Score =  240 bits (613), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 152/415 (36%), Positives = 234/415 (56%), Gaps = 21/415 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A ++  +  +++ KK  G     + +  Q+     PF  T  Q  AI  ++ DM Q   
Sbjct: 569 VAAELLDVYAQREVKK--GFEFKYDREEFQQFAATFPFEETHDQAMAINAVISDMCQPKA 626

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE
Sbjct: 627 MDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVE 686

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +++       +++ LE +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K
Sbjct: 687 VLSRFKTTKEQKQILENLAEGKVDILIGTHKLIQSDVKFSDLGLLIIDEEHRFGVGQKEK 746

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           + Q      +L +TATPIPRTL +   G  D+S I   PA R  IKT    + + D++I 
Sbjct: 747 IKQLRENIDILTLTATPIPRTLNMAMNGIRDLSIIATPPARRVSIKTF---VRQKDDLII 803

Query: 474 RLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           R + +L E   G + Y++   +     ++  +  E+  +L     + + I HG+M + + 
Sbjct: 804 R-EAILREILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVVIGHGQMREREL 855

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E VM  F +    +L+ +T+IE GIDV  A+ IIIE A++FGLAQLHQLRGRVGR    +
Sbjct: 856 ERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQA 915

Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
              LL  PP  ++K++  RL  L++ ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 916 YAYLLTPPPKLMTKDAKRRLEALESLDNLGAGFILATHDLEIRGAGELLGNEQSG 970


>gi|168491776|ref|ZP_02715919.1| transcription-repair coupling factor [Streptococcus pneumoniae
            CDC0288-04]
 gi|183573939|gb|EDT94467.1| transcription-repair coupling factor [Streptococcus pneumoniae
            CDC0288-04]
          Length = 1169

 Score =  240 bits (612), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 153/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  IVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQGYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|297579403|ref|ZP_06941331.1| transcription-repair coupling factor [Vibrio cholerae RC385]
 gi|297536997|gb|EFH75830.1| transcription-repair coupling factor [Vibrio cholerae RC385]
          Length = 1155

 Score =  240 bits (612), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 145/382 (37%), Positives = 216/382 (56%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ +A G+  I++GTH L  
Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKIDILVGTHKLLS 720

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  IKT    + + D+ + R  V+  +  G + Y++  Q+E  +K  ++  ++
Sbjct: 781 IATPPARRLAIKTF---VRQSDDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLENL 837

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V           + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ I
Sbjct: 838 VPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTI 888

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618
           I++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   GF
Sbjct: 889 IMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGF 948

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 949 TLATHDLEIRGAGELLGEEQSG 970


>gi|327471614|gb|EGF17057.1| transcription-repair coupling factor [Streptococcus sanguinis SK408]
          Length = 1167

 Score =  239 bits (611), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 150/409 (36%), Positives = 230/409 (56%), Gaps = 25/409 (6%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T+ Q  +I+++ +DM     M R+L GDVG GKT VA+ A   AV    Q  ++
Sbjct: 611  DFPYVETEDQLRSIQEVKKDMESSRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVL 670

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +LAQQHY   K+   +  + VE+++    +A +++ LE++  GQ  IIIGTH L  
Sbjct: 671  VPTTVLAQQHYTNFKERFNDFAVNVEVLSRFRSKAEQKQTLEKLQKGQVDIIIGTHRLLS 730

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              +++  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S 
Sbjct: 731  KDVEFADLGLIIIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSV 790

Query: 448  ITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503
            I   P  R P++T ++  N   I E + R    +  G + Y++  +++  E+K S  R +
Sbjct: 791  IETPPTNRYPVQTYVLESNPTVIREAVLR---EIDRGGQVYYLYNKVDTIEQKVSELREL 847

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +            SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ +
Sbjct: 848  IPEV---------SIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTL 898

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGF 618
             +ENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   GF
Sbjct: 899  FVENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGF 958

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKH 665
             IA  DL  R  G ILG  QSG    +    E++  LLE  IA+K  + 
Sbjct: 959  KIAMRDLSIRGAGNILGSMQSGFIDSV--GFEMYSQLLEEAIAKKQGRE 1005


>gi|261867464|ref|YP_003255386.1| transcription-repair coupling factor [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412796|gb|ACX82167.1| transcription-repair coupling factor [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 1173

 Score =  239 bits (611), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 146/409 (35%), Positives = 234/409 (57%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  Q  AI  ++ DM+Q   M R++ 
Sbjct: 595 LLDVYAQREAQKGFSFQYDREEFQQFTATFPFEETHDQLMAINAVISDMTQPKAMDRLVC 654

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++  K    N  + VE+++   
Sbjct: 655 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHFDNFKDRFANLPVNVEMLSRFK 714

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ ++ +A G+  I+IGTH + Q  +Q++ L L+I+DE+HRFGV+Q+ K+ Q   
Sbjct: 715 TAKEQKRVIQDLADGKVDILIGTHKIIQGDVQFHDLGLLIIDEEHRFGVRQKEKMKQLRA 774

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D+++ R + +L
Sbjct: 775 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLTIKTF---VRQTDDLVIR-EAIL 830

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 831 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVTVGHGQMRERELERVMSD 883

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A++FGLAQLHQLRGRVGR    +   LL 
Sbjct: 884 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQAYAYLLT 943

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L++ ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 944 PPPKLMTKDAQKRLEALESLDNLGAGFILATHDLEIRGAGELLGNEQSG 992


>gi|15602906|ref|NP_245978.1| hypothetical protein PM1041 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721375|gb|AAK03125.1| Mfd [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 1145

 Score =  239 bits (611), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 150/409 (36%), Positives = 231/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G   + + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 569 LLDVYAQREAQKGFAFHYDREAFQQFAATFPFEETVDQEMAINAVIADMCQAKAMDRLVC 628

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH+E  K    N  I VE+++   
Sbjct: 629 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHFENFKDRFANLPINVEVLSRFK 688

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               ++  L+ +A G+  I+IGTH L Q  +Q+  L L+++DE+HRFGV+Q+ ++ Q   
Sbjct: 689 TAKEQKVVLQNLAEGKVDILIGTHKLIQSDVQFKDLGLLVIDEEHRFGVRQKERIKQLRA 748

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + DE + R + +L
Sbjct: 749 NIDILTLTATPIPRTLNMAMHGIRDLSIISTPPARRLTIKTF---VKQSDESVIR-EAIL 804

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + I HG+M + + E VM  
Sbjct: 805 REILRGGQVYYLHNDV-----ASIENCAEKLRTLVPE--ARVTIGHGQMRERELERVMSD 857

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A++FGLAQLHQLRGRVGR    +   LL 
Sbjct: 858 FYHQRFNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQAYAYLLT 917

Query: 597 HP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            P   ++K++  RL  L++ ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 918 PPIKAMTKDAQKRLEALESLDNLGAGFILATHDLEIRGAGELLGSEQSG 966


>gi|15902050|ref|NP_357600.1| transcription-repair coupling factor [Streptococcus pneumoniae R6]
 gi|116516151|ref|YP_815427.1| transcription-repair coupling factor [Streptococcus pneumoniae D39]
 gi|15457534|gb|AAK98810.1| Transcription-repair coupling factor [Streptococcus pneumoniae R6]
 gi|116076727|gb|ABJ54447.1| transcription-repair coupling factor [Streptococcus pneumoniae D39]
          Length = 1169

 Score =  239 bits (611), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQGYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|148984550|ref|ZP_01817838.1| transcription-repair coupling factor [Streptococcus pneumoniae
            SP3-BS71]
 gi|147923327|gb|EDK74441.1| transcription-repair coupling factor [Streptococcus pneumoniae
            SP3-BS71]
 gi|301799155|emb|CBW31667.1| putative putative transcription-repair coupling factor [Streptococcus
            pneumoniae OXC141]
          Length = 1169

 Score =  239 bits (611), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|169833013|ref|YP_001693440.1| transcription-repair coupling factor [Streptococcus pneumoniae
            Hungary19A-6]
 gi|168995515|gb|ACA36127.1| transcription-repair coupling factor [Streptococcus pneumoniae
            Hungary19A-6]
          Length = 1169

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQGYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|332198663|gb|EGJ12746.1| transcription-repair coupling factor [Streptococcus pneumoniae
            GA41317]
          Length = 1169

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 230/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|304397240|ref|ZP_07379119.1| transcription-repair coupling factor [Pantoea sp. aB]
 gi|304355389|gb|EFM19757.1| transcription-repair coupling factor [Pantoea sp. aB]
          Length = 1147

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 218/386 (56%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A+E   
Sbjct: 591 QLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAIENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + LE+ + G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRTAKEQAQVLEQASDGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L    ++++ L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLMSDLKWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D+++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREFDDLVIR-EAILREVLRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                +R + L     + +AI HG+M + D E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IEKAAQRLSELVPE--ARVAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ +++ RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKSMTADAHKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGDEQSG 965


>gi|168576116|ref|ZP_02722021.1| transcription-repair coupling factor [Streptococcus pneumoniae
            MLV-016]
 gi|307066642|ref|YP_003875608.1| transcription-repair coupling factor [Streptococcus pneumoniae AP200]
 gi|183578032|gb|EDT98560.1| transcription-repair coupling factor [Streptococcus pneumoniae
            MLV-016]
 gi|306408179|gb|ADM83606.1| Transcription-repair coupling factor (superfamily II helicase)
            [Streptococcus pneumoniae AP200]
          Length = 1169

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|121727094|ref|ZP_01680268.1| transcription-repair coupling factor [Vibrio cholerae V52]
 gi|121630472|gb|EAX62864.1| transcription-repair coupling factor [Vibrio cholerae V52]
          Length = 1155

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ +A G+  I++GTH L  
Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 720

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 837 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   G
Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970


>gi|148997952|ref|ZP_01825465.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP11-BS70]
 gi|147755962|gb|EDK63005.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP11-BS70]
          Length = 1118

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 559 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 618

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 619 TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 678

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 679 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 738

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 739 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 786

Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 787 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 846

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
           ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 847 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 906

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
           A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 907 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 949


>gi|148988910|ref|ZP_01820325.1| transcription-repair coupling factor [Streptococcus pneumoniae
            SP6-BS73]
 gi|147925721|gb|EDK76797.1| transcription-repair coupling factor [Streptococcus pneumoniae
            SP6-BS73]
          Length = 1169

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|15641888|ref|NP_231520.1| transcription-repair coupling factor [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121587314|ref|ZP_01677086.1| transcription-repair coupling factor [Vibrio cholerae 2740-80]
 gi|147674778|ref|YP_001217419.1| transcription-repair coupling factor [Vibrio cholerae O395]
 gi|153823448|ref|ZP_01976115.1| transcription-repair coupling factor [Vibrio cholerae B33]
 gi|227082016|ref|YP_002810567.1| transcription-repair coupling factor [Vibrio cholerae M66-2]
 gi|254848973|ref|ZP_05238323.1| transcription-repair coupling factor [Vibrio cholerae MO10]
 gi|255745354|ref|ZP_05419303.1| transcription-repair coupling factor [Vibrio cholera CIRS 101]
 gi|262153542|ref|ZP_06028671.1| transcription-repair coupling factor [Vibrio cholerae INDRE 91/1]
 gi|262167442|ref|ZP_06035149.1| transcription-repair coupling factor [Vibrio cholerae RC27]
 gi|298498075|ref|ZP_07007882.1| transcription-repair coupling factor [Vibrio cholerae MAK 757]
 gi|9656418|gb|AAF95034.1| transcription-repair coupling factor [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121548474|gb|EAX58532.1| transcription-repair coupling factor [Vibrio cholerae 2740-80]
 gi|126519037|gb|EAZ76260.1| transcription-repair coupling factor [Vibrio cholerae B33]
 gi|146316661|gb|ABQ21200.1| transcription-repair coupling factor [Vibrio cholerae O395]
 gi|227009904|gb|ACP06116.1| transcription-repair coupling factor [Vibrio cholerae M66-2]
 gi|227013784|gb|ACP09994.1| transcription-repair coupling factor [Vibrio cholerae O395]
 gi|254844678|gb|EET23092.1| transcription-repair coupling factor [Vibrio cholerae MO10]
 gi|255737184|gb|EET92580.1| transcription-repair coupling factor [Vibrio cholera CIRS 101]
 gi|262024139|gb|EEY42833.1| transcription-repair coupling factor [Vibrio cholerae RC27]
 gi|262030669|gb|EEY49304.1| transcription-repair coupling factor [Vibrio cholerae INDRE 91/1]
 gi|297542408|gb|EFH78458.1| transcription-repair coupling factor [Vibrio cholerae MAK 757]
          Length = 1155

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ +A G+  I++GTH L  
Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 720

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 837 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   G
Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970


>gi|225855741|ref|YP_002737252.1| transcription-repair coupling factor [Streptococcus pneumoniae P1031]
 gi|225724744|gb|ACO20596.1| transcription-repair coupling factor [Streptococcus pneumoniae P1031]
          Length = 1169

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|168493994|ref|ZP_02718137.1| transcription-repair coupling factor [Streptococcus pneumoniae
            CDC3059-06]
 gi|183575852|gb|EDT96380.1| transcription-repair coupling factor [Streptococcus pneumoniae
            CDC3059-06]
          Length = 1169

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|149013378|ref|ZP_01834087.1| transcription-repair coupling factor [Streptococcus pneumoniae
            SP19-BS75]
 gi|182682976|ref|YP_001834723.1| transcription-repair coupling factor [Streptococcus pneumoniae
            CGSP14]
 gi|303254907|ref|ZP_07340992.1| transcription-repair coupling factor [Streptococcus pneumoniae BS455]
 gi|303259732|ref|ZP_07345708.1| transcription-repair coupling factor [Streptococcus pneumoniae
            SP-BS293]
 gi|303262199|ref|ZP_07348144.1| transcription-repair coupling factor [Streptococcus pneumoniae
            SP14-BS292]
 gi|303265395|ref|ZP_07351302.1| transcription-repair coupling factor [Streptococcus pneumoniae BS397]
 gi|303266057|ref|ZP_07351951.1| transcription-repair coupling factor [Streptococcus pneumoniae BS457]
 gi|303268465|ref|ZP_07354259.1| transcription-repair coupling factor [Streptococcus pneumoniae BS458]
 gi|147762901|gb|EDK69849.1| transcription-repair coupling factor [Streptococcus pneumoniae
            SP19-BS75]
 gi|182628310|gb|ACB89258.1| transcription-repair coupling factor [Streptococcus pneumoniae
            CGSP14]
 gi|301800979|emb|CBW33640.1| putative putative transcription-repair coupling factor [Streptococcus
            pneumoniae INV200]
 gi|302598178|gb|EFL65239.1| transcription-repair coupling factor [Streptococcus pneumoniae BS455]
 gi|302636839|gb|EFL67329.1| transcription-repair coupling factor [Streptococcus pneumoniae
            SP14-BS292]
 gi|302639284|gb|EFL69743.1| transcription-repair coupling factor [Streptococcus pneumoniae
            SP-BS293]
 gi|302641966|gb|EFL72319.1| transcription-repair coupling factor [Streptococcus pneumoniae BS458]
 gi|302644361|gb|EFL74614.1| transcription-repair coupling factor [Streptococcus pneumoniae BS457]
 gi|302645072|gb|EFL75312.1| transcription-repair coupling factor [Streptococcus pneumoniae BS397]
          Length = 1169

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|293396556|ref|ZP_06640832.1| transcription-repair coupling factor [Serratia odorifera DSM 4582]
 gi|291420820|gb|EFE94073.1| transcription-repair coupling factor [Serratia odorifera DSM 4582]
          Length = 1159

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 159/424 (37%), Positives = 229/424 (54%), Gaps = 26/424 (6%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q   +  PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE G 
Sbjct: 601  QLFCQTFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGK 660

Query: 323  QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            Q  ++ P  +LAQQH++  +       + +E+++       +++ L+  A G+  I+IGT
Sbjct: 661  QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFRSAKEQQQVLDDAADGKVDIVIGT 720

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 721  HKLLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 780

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
             D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 781  RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREVLRGGQVYYLYNDVE-----N 831

Query: 500  FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                 +R   L     + IAI HG+M + D E VM+ F +    +L+ TT+IE GID+  
Sbjct: 832  IDKAAQRLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 889

Query: 560  ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
            A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL   P  +S +++ RL  +   ED 
Sbjct: 890  ANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSADAHKRLEAIATLEDL 949

Query: 617  --GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP--- 671
              GF +A  DL+ R  GE+LG  QSG  +       L+  LLE A    KH   ++P   
Sbjct: 950  GAGFALATHDLEIRGAGELLGEDQSG--QMTTIGFSLYMELLESAVDALKH--GREPSLE 1005

Query: 672  DLTS 675
            DLTS
Sbjct: 1006 DLTS 1009


>gi|76788164|ref|YP_328735.1| transcription-repair coupling factor [Streptococcus agalactiae A909]
 gi|77405617|ref|ZP_00782706.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
 gi|76563221|gb|ABA45805.1| transcription-repair coupling factor [Streptococcus agalactiae A909]
 gi|77175761|gb|EAO78541.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
          Length = 1165

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 160/459 (34%), Positives = 250/459 (54%), Gaps = 30/459 (6%)

Query: 224  ARERLA--YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            A++R+A   +++    + L   R Q +   G   + +  +      +  +  T+ Q  +I
Sbjct: 564  AKQRVAKQVEDIADDLLKLYAERSQLQ---GFAFSPDDNMQNDFDNDFAYVETEDQLRSI 620

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            K+I QDM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH+E  
Sbjct: 621  KEIKQDMEGNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHFENF 680

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            K+   N  + V++++    +  +   L+R++ GQ  IIIGTH L    + +  L L+++D
Sbjct: 681  KERFSNYPVTVDVLSRFRSKKEQTDTLKRLSKGQVDIIIGTHRLLSQDVVFSDLGLIVID 740

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P  R P++T 
Sbjct: 741  EEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTY 800

Query: 462  IIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517
            ++  N   + E I R    +  G + +++  +++  E+K S  + +V           +S
Sbjct: 801  VLETNPGLVREAIIR---EIDRGGQVFYVYNKVDTIEQKVSELQELVPE---------AS 848

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + +ENA+H GL+ L+
Sbjct: 849  IGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENADHMGLSTLY 908

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G 
Sbjct: 909  QLRGRVGRSNRIAYAYLMYRPDKVLTEISEKRLDAIKGFTELGSGFKIAMRDLSIRGAGN 968

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
            ILG  QSG    +    E++  LLE  IA K  K ++ Q
Sbjct: 969  ILGASQSGFIDSV--GFEMYSQLLEQAIATKQGKSLIRQ 1005


>gi|254226050|ref|ZP_04919649.1| transcription-repair coupling factor [Vibrio cholerae V51]
 gi|125621433|gb|EAZ49768.1| transcription-repair coupling factor [Vibrio cholerae V51]
          Length = 1155

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ +A G+  I++GTH L  
Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 720

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 837 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   G
Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970


>gi|119774467|ref|YP_927207.1| transcription-repair coupling factor [Shewanella amazonensis SB2B]
 gi|119766967|gb|ABL99537.1| transcription-repair coupling factor [Shewanella amazonensis SB2B]
          Length = 1155

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 149/430 (34%), Positives = 237/430 (55%), Gaps = 23/430 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ +     +A ++  +  R++ +   G P  ++     +  +  PF  T  QE+
Sbjct: 554 WSKAKRKAIEKIRDVAAELLDVYARREARP--GDPCTLDEAEYAQFAQGFPFEETVDQET 611

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK ++ DM Q   M R++ GDVG GKT VA+ A   AV +G Q V++ P  +LAQQH+E
Sbjct: 612 AIKAVIDDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLVPTTLLAQQHFE 671

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++       ++  L  +  G+  I+IGTH L    + +  L L+I
Sbjct: 672 NFKDRFADWPVRIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNTELNFESLGLLI 731

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV+Q+ ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 732 IDEEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVK 791

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T +   ++  + E I  L+ +L  G + Y++  Q+E  EK   + R ++           
Sbjct: 792 TFVREYDKATVREAI--LREIL-RGGQVYYLHNQVETIEKAAQDIRELLPE--------- 839

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +   HG+M + + E VM  F +    +L+ TT+IE GIDV  A+ I+I+ A+HFGLAQ
Sbjct: 840 ARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANTILIDRADHFGLAQ 899

Query: 576 LHQLRGRVGRGEEISSCILLY-HPPL-SKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   L+  HP L + ++  RL  +   ED   GF++A +DL+ R  
Sbjct: 900 LHQLRGRVGRSHHQAYAYLMTPHPKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIRGA 959

Query: 631 GEILGIKQSG 640
           GE+LG +QSG
Sbjct: 960 GELLGDEQSG 969


>gi|194397105|ref|YP_002036727.1| transcription-repair coupling factor [Streptococcus pneumoniae G54]
 gi|194356772|gb|ACF55220.1| transcription-repair coupling factor [Streptococcus pneumoniae G54]
          Length = 1169

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|149003146|ref|ZP_01828055.1| transcription-repair coupling factor [Streptococcus pneumoniae
            SP14-BS69]
 gi|237651085|ref|ZP_04525337.1| transcription-repair coupling factor [Streptococcus pneumoniae CCRI
            1974]
 gi|237821198|ref|ZP_04597043.1| transcription-repair coupling factor [Streptococcus pneumoniae CCRI
            1974M2]
 gi|147758887|gb|EDK65883.1| transcription-repair coupling factor [Streptococcus pneumoniae
            SP14-BS69]
          Length = 1169

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|251789258|ref|YP_003003979.1| transcription-repair coupling factor [Dickeya zeae Ech1591]
 gi|247537879|gb|ACT06500.1| transcription-repair coupling factor [Dickeya zeae Ech1591]
          Length = 1150

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 216/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +  PF  T  Q  AI  +L DM +   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 592 QLFCQGFPFDTTPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 651

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    N  + +++++    Q  + + LE+   G+  I+IGT
Sbjct: 652 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIDMLSRFRSQKEQAQVLEQTQDGKVDILIGT 711

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 712 HKLLQSDVRWRDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGI 771

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 772 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAMLREILRGGQVYYLYNDVE-----N 822

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                +R + L     + IAI HG+M + D E VM+ F +    +L+ TT+IE GID+ +
Sbjct: 823 IDKATQRLSELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPN 880

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL   P  +S +++ RL  + + ED 
Sbjct: 881 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSSDAHKRLEAIASLEDL 940

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 941 GAGFALATHDLEIRGAGELLGEDQSG 966


>gi|327481347|gb|AEA84657.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri DSM
           4166]
          Length = 1145

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 144/380 (37%), Positives = 216/380 (56%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++AI  + +D+     M R++ GDVG GKT VA+ A   AV  G Q  ++
Sbjct: 592 GFPFEETPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAVL 651

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++        + A+  +A G+  I+IGTH L Q
Sbjct: 652 VPTTLLAQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAITELADGKIDILIGTHKLLQ 711

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +++  L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL ++  G  D+S 
Sbjct: 712 DDVKFSNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSI 771

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N    + E L   L  G + Y++   ++  EK  ++ +++V 
Sbjct: 772 IATPPARRLSVRTFVMEANN-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQTLVP 830

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + IAI HG+M + D E VM  F +    +L+A+T+IE GIDV  A+ III
Sbjct: 831 E---------ARIAIGHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIII 881

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + N +D   GF++
Sbjct: 882 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKAMTDDAQKRLEAIANAQDLGAGFVL 941

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 942 ATHDLEIRGAGELLGEGQSG 961


>gi|221134655|ref|ZP_03560958.1| transcription-repair coupling factor [Glaciecola sp. HTCC2999]
          Length = 1170

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 151/391 (38%), Positives = 217/391 (55%), Gaps = 29/391 (7%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +K   + PF  T  QE AI  +L DM   + M R++ GDVG GKT VA+ A   A  AG 
Sbjct: 611 KKFADSFPFPETPDQEQAINAVLNDMGMPSAMDRLVCGDVGFGKTEVAMRAAFIAANAGK 670

Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           Q  I+ P  +LAQQH+E F+ ++     N Q++   ++       +R  LE +  G   I
Sbjct: 671 QVSILVPTTLLAQQHFENFVDRFADWPFNIQVLSRFVSAK----DQRAVLEGVKSGHVDI 726

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           ++GTH L Q+ +++  L LVI+DE+HRFGV+Q+ K         +L +TATPIPRTL + 
Sbjct: 727 VVGTHKLIQNDVKFADLGLVIIDEEHRFGVRQKDKFKALRADVDILTLTATPIPRTLNMA 786

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
             G  D+S I   PA R PIKT +   N  + + E +   +  G + Y++          
Sbjct: 787 MSGMRDLSIIATPPAKRLPIKTFVQKRNH-ETIREAVMREILRGGQVYFL---------H 836

Query: 499 NFRSVVERFNSLHEHFT----SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           N  + +E  N++ E       + IAI HG+M + + E VMD F +    +L+ TT+IE G
Sbjct: 837 NDVATIE--NTMQELTDIIPEARIAIGHGQMRERELEQVMDDFYHQRYNVLLCTTIIETG 894

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK 612
           IDV  A+ II++ A+H GLAQLHQLRGRVGR    +   LL   P  ++K+S  RL  + 
Sbjct: 895 IDVPSANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPRRMTKDSIKRLEAIA 954

Query: 613 NTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 955 SLEDLGAGFALATHDLEIRGAGELLGDGQSG 985


>gi|77407708|ref|ZP_00784463.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
 gi|77173707|gb|EAO76821.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
          Length = 1165

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 160/459 (34%), Positives = 250/459 (54%), Gaps = 30/459 (6%)

Query: 224  ARERLA--YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            A++R+A   +++    + L   R Q +   G   + +  +      +  +  T+ Q  +I
Sbjct: 564  AKQRVAKQVEDIADDLLKLYAERSQLQ---GFAFSPDDNMQNDFDNDFAYVETEDQLRSI 620

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            K+I QDM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH+E  
Sbjct: 621  KEIKQDMEGNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHFENF 680

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            K+   N  + V++++    +  +   L+R++ GQ  IIIGTH L    + +  L L+++D
Sbjct: 681  KERFSNYPVTVDVLSRFRSKKEQTDTLKRLSKGQVDIIIGTHRLLSQDVVFSDLGLIVID 740

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P  R P++T 
Sbjct: 741  EEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTY 800

Query: 462  IIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517
            ++  N   + E I R    +  G + +++  +++  E+K S  + +V           +S
Sbjct: 801  VLETNPGLVREAIIR---EIDRGGQVFYVYNKVDTIEQKVSELQELVPE---------AS 848

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + +ENA+H GL+ L+
Sbjct: 849  IGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENADHMGLSTLY 908

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G 
Sbjct: 909  QLRGRVGRSNRIAYAYLMYRPDKVLTEISEKRLDAIKGFTELGSGFKIAMRDLSIRGAGN 968

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
            ILG  QSG    +    E++  LLE  IA K  K ++ Q
Sbjct: 969  ILGASQSGFIDSV--GFEMYSQLLEQAIATKQGKSLIRQ 1005


>gi|146282996|ref|YP_001173149.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri
           A1501]
 gi|145571201|gb|ABP80307.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri
           A1501]
          Length = 1148

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 144/380 (37%), Positives = 216/380 (56%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++AI  + +D+     M R++ GDVG GKT VA+ A   AV  G Q  ++
Sbjct: 595 GFPFEETPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAVL 654

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++        + A+  +A G+  I+IGTH L Q
Sbjct: 655 VPTTLLAQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAITELADGKIDILIGTHKLLQ 714

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +++  L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL ++  G  D+S 
Sbjct: 715 DDVKFSNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSI 774

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N    + E L   L  G + Y++   ++  EK  ++ +++V 
Sbjct: 775 IATPPARRLSVRTFVMEANN-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVP 833

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + IAI HG+M + D E VM  F +    +L+A+T+IE GIDV  A+ III
Sbjct: 834 E---------ARIAIGHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIII 884

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + N +D   GF++
Sbjct: 885 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKAMTDDAQKRLEAIANAQDLGAGFVL 944

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 945 ATHDLEIRGAGELLGEGQSG 964


>gi|183179491|ref|ZP_02957702.1| transcription-repair coupling factor [Vibrio cholerae MZO-3]
 gi|183012902|gb|EDT88202.1| transcription-repair coupling factor [Vibrio cholerae MZO-3]
          Length = 1155

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ +A G+  I++GTH L  
Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 720

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 837 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   G
Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970


>gi|229520346|ref|ZP_04409772.1| transcription-repair coupling factor [Vibrio cholerae TM 11079-80]
 gi|229342712|gb|EEO07704.1| transcription-repair coupling factor [Vibrio cholerae TM 11079-80]
          Length = 1157

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 603 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 662

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ +A G+  I++GTH L  
Sbjct: 663 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 722

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 723 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 782

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 783 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 838

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 839 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 889

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   G
Sbjct: 890 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 949

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 950 FTLATHDLEIRGAGELLGEEQSG 972


>gi|153825189|ref|ZP_01977856.1| transcription-repair coupling factor [Vibrio cholerae MZO-2]
 gi|149741168|gb|EDM55219.1| transcription-repair coupling factor [Vibrio cholerae MZO-2]
          Length = 1155

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ +A G+  I++GTH L  
Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 720

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 837 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   G
Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970


>gi|229515266|ref|ZP_04404726.1| transcription-repair coupling factor [Vibrio cholerae TMA 21]
 gi|229347971|gb|EEO12930.1| transcription-repair coupling factor [Vibrio cholerae TMA 21]
          Length = 1157

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 603 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 662

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ +A G+  I++GTH L  
Sbjct: 663 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 722

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 723 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 782

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 783 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 838

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 839 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 889

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   G
Sbjct: 890 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 949

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 950 FTLATHDLEIRGAGELLGEEQSG 972


>gi|229529092|ref|ZP_04418482.1| transcription-repair coupling factor [Vibrio cholerae 12129(1)]
 gi|229332866|gb|EEN98352.1| transcription-repair coupling factor [Vibrio cholerae 12129(1)]
          Length = 1157

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 603 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 662

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ +A G+  I++GTH L  
Sbjct: 663 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 722

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 723 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 782

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 783 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 838

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 839 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 889

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   G
Sbjct: 890 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 949

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 950 FTLATHDLEIRGAGELLGEEQSG 972


>gi|303250575|ref|ZP_07336772.1| transcription repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252980|ref|ZP_07534867.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650563|gb|EFL80722.1| transcription repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859509|gb|EFM91535.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 1149

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/380 (38%), Positives = 217/380 (57%), Gaps = 19/380 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ 
Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+
Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQE 722

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +Q+  L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +      D+S I
Sbjct: 723 DVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNSMRDLSVI 782

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
              PA R  IKT    + + D++I + + +L E   G + Y++   +     +   +   
Sbjct: 783 ASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYYLHNDV-----ATIENCAT 833

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +   L     + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ III
Sbjct: 834 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  PP  L+K++  RL   S + N   GF++
Sbjct: 892 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVL 951

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG +QSG
Sbjct: 952 ATHDLEIRGAGELLGAEQSG 971


>gi|293404403|ref|ZP_06648397.1| transcription-repair coupling factor [Escherichia coli FVEC1412]
 gi|298380180|ref|ZP_06989785.1| transcription-repair coupling factor [Escherichia coli FVEC1302]
 gi|300896877|ref|ZP_07115367.1| transcription-repair coupling factor [Escherichia coli MS 198-1]
 gi|291428989|gb|EFF02014.1| transcription-repair coupling factor [Escherichia coli FVEC1412]
 gi|298279878|gb|EFI21386.1| transcription-repair coupling factor [Escherichia coli FVEC1302]
 gi|300359284|gb|EFJ75154.1| transcription-repair coupling factor [Escherichia coli MS 198-1]
          Length = 1164

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 149/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G +AY++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQAYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|229508016|ref|ZP_04397521.1| transcription-repair coupling factor [Vibrio cholerae BX 330286]
 gi|229511745|ref|ZP_04401224.1| transcription-repair coupling factor [Vibrio cholerae B33]
 gi|229518883|ref|ZP_04408326.1| transcription-repair coupling factor [Vibrio cholerae RC9]
 gi|229607563|ref|YP_002878211.1| transcription-repair coupling factor [Vibrio cholerae MJ-1236]
 gi|229343572|gb|EEO08547.1| transcription-repair coupling factor [Vibrio cholerae RC9]
 gi|229351710|gb|EEO16651.1| transcription-repair coupling factor [Vibrio cholerae B33]
 gi|229355521|gb|EEO20442.1| transcription-repair coupling factor [Vibrio cholerae BX 330286]
 gi|229370218|gb|ACQ60641.1| transcription-repair coupling factor [Vibrio cholerae MJ-1236]
          Length = 1157

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 603 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 662

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ +A G+  I++GTH L  
Sbjct: 663 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 722

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 723 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 782

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 783 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 838

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 839 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 889

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   G
Sbjct: 890 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 949

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 950 FTLATHDLEIRGAGELLGEEQSG 972


>gi|293391342|ref|ZP_06635676.1| transcription-repair coupling factor [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951876|gb|EFE01995.1| transcription-repair coupling factor [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 1152

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 146/409 (35%), Positives = 234/409 (57%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  Q  AI  ++ DM+Q   M R++ 
Sbjct: 574 LLDVYAQREAQKGFSFQYDREEFQQFTATFPFEETHDQLMAINAVISDMTQPKAMDRLVC 633

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++  K    N  + VE+++   
Sbjct: 634 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHFDNFKDRFANLPVNVEMLSRFK 693

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ ++ +A G+  I+IGTH + Q  +Q++ L L+I+DE+HRFGV+Q+ K+ Q   
Sbjct: 694 TAKEQKRVIQDLADGKVDILIGTHKIIQGDVQFHDLGLLIIDEEHRFGVRQKEKMKQLRA 753

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D+++ R + +L
Sbjct: 754 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLTIKTF---VRQTDDLVIR-EAIL 809

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 810 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVTVGHGQMRERELERVMSD 862

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A++FGLAQLHQLRGRVGR    +   LL 
Sbjct: 863 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQAYAYLLT 922

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L++ ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 923 PPPKLMTKDAQKRLEALESLDNLGAGFILATHDLEIRGAGELLGNEQSG 971


>gi|218704525|ref|YP_002412044.1| transcription-repair coupling factor [Escherichia coli UMN026]
 gi|218431622|emb|CAR12501.1| transcription-repair coupling factor [Escherichia coli UMN026]
          Length = 1148

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 149/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G +AY++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQAYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|325282867|ref|YP_004255408.1| transcription factor CarD [Deinococcus proteolyticus MRP]
 gi|324314676|gb|ADY25791.1| transcription factor CarD [Deinococcus proteolyticus MRP]
          Length = 1054

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 144/402 (35%), Positives = 222/402 (55%), Gaps = 36/402 (8%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++I +N  +  T  Q +A+K+ L+D+ + N   R++ GDVG GKT VAL A    V  G 
Sbjct: 493 EQIEQNFAYELTADQRTALKETLRDLEKANPADRLISGDVGFGKTEVALRAAHRVVGHGA 552

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LA QH +  ++  +   + VE ++        R+ L  +A G+  I+IGT
Sbjct: 553 QVAMLVPTTLLADQHLQTFRERLKGLPVRVEGLSRFTSDKEAREILSGLAAGRVDIVIGT 612

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP-----------------HVLL 425
           H L    I++  L L+IVDE+HRFGV Q+ KL      P                   L 
Sbjct: 613 HRLLSGDIEFKNLGLIIVDEEHRFGVGQKEKLRAMRGLPSTPEGGKLELPEGTKVVDTLA 672

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGK 483
           ++ATPIPRTL ++ +G  D+S I   P GRKPI+TV+ P    D V  R  +V  +  G 
Sbjct: 673 LSATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTVLTP---FDPVTVRDAIVSEIERGG 729

Query: 484 KAYWICPQIEE--KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           K ++I  +I     +    RS+V           + I + HGRMS+ + E +M  F+ G 
Sbjct: 730 KVFYIHDRIASIGARSLYLRSLVPE---------ARIGVAHGRMSEEELEEIMKGFEEGA 780

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TT++E G+D+ +A+ I+IE A+  GLAQL+QLRGRVGR E+ +   L Y P ++
Sbjct: 781 FDVLLSTTIVETGLDIPEANTILIERADRLGLAQLYQLRGRVGRREQTAYAYLFYPPRMT 840

Query: 602 KNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           +N+  RL  + + +D   G L+AE+D++ R  G ILG +Q G
Sbjct: 841 ENAQRRLWAIADLQDLGSGHLLAEKDMEIRGVGNILGEEQHG 882


>gi|50120752|ref|YP_049919.1| transcription-repair coupling factor [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611278|emb|CAG74725.1| transcription-repair coupling factor [Pectobacterium atrosepticum
           SCRI1043]
          Length = 1149

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 212/386 (54%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    N  + +E+I+       + + L+    G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQILKETQEGKVDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  + ++ L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVHWHDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDNLMVR-EAILRETLRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                +R   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IEKATQRLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPS 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  PP  +S ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAMSTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGDDQSG 965


>gi|301793331|emb|CBW35690.1| putative putative transcription-repair coupling factor [Streptococcus
            pneumoniae INV104]
          Length = 1169

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|113461304|ref|YP_719373.1| transcription-repair coupling factor [Haemophilus somnus 129PT]
 gi|112823347|gb|ABI25436.1| transcription-repair coupling factor [Haemophilus somnus 129PT]
          Length = 1143

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 150/415 (36%), Positives = 238/415 (57%), Gaps = 21/415 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A ++  +  +++ KK  G     + +  ++     PF  T  Q+ AI  ++ DM Q+  
Sbjct: 564 VAAELLDVYAQREVKK--GFAFQYDKEEFKQFAATFPFEETPDQKMAINAVISDMCQEKA 621

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE
Sbjct: 622 MDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVE 681

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +++       +++ L+ +  G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K
Sbjct: 682 MLSRFRTAKEQKQILQHLNEGKIDILIGTHKLIQSEVKFSDLGLLIIDEEHRFGVSQKEK 741

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           + Q  T   +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + ++D++I 
Sbjct: 742 IKQLRTNIDILTLTATPIPRTLNMAMSGIRDLSIISTPPARRLSIKTF---VRQVDDLII 798

Query: 474 RLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           R + VL E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + 
Sbjct: 799 R-EAVLREILRGGQVYYLHNDV-----ASIENCAEKLTALVPE--ARVVVGHGQMREREL 850

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E VM  F +    +L+ +T+IE GIDV  A+ IIIE A++FGLAQLHQLRGRVGR    +
Sbjct: 851 ERVMSDFYHQRFNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQA 910

Query: 591 SCILLY-HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
              LL  HP  ++K++  RL  L++ ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 911 YAYLLTPHPKAMTKDAVKRLEALESLDNLGAGFILATHDLEIRGAGELLGNEQSG 965


>gi|221230954|ref|YP_002510106.1| transcription-repair coupling factor [Streptococcus pneumoniae ATCC
            700669]
 gi|225853617|ref|YP_002735129.1| transcription-repair coupling factor [Streptococcus pneumoniae JJA]
 gi|220673414|emb|CAR67872.1| putative putative transcription-repair coupling factor [Streptococcus
            pneumoniae ATCC 700669]
 gi|225722629|gb|ACO18482.1| transcription-repair coupling factor [Streptococcus pneumoniae JJA]
          Length = 1169

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|225860052|ref|YP_002741561.1| transcription-repair coupling factor [Streptococcus pneumoniae
            Taiwan19F-14]
 gi|298229483|ref|ZP_06963164.1| transcription-repair coupling factor [Streptococcus pneumoniae str.
            Canada MDR_19F]
 gi|298255135|ref|ZP_06978721.1| transcription-repair coupling factor [Streptococcus pneumoniae str.
            Canada MDR_19A]
 gi|298501796|ref|YP_003723736.1| transcription-repair coupling factor [Streptococcus pneumoniae
            TCH8431/19A]
 gi|225727732|gb|ACO23583.1| transcription-repair coupling factor [Streptococcus pneumoniae
            Taiwan19F-14]
 gi|298237391|gb|ADI68522.1| transcription-repair coupling factor [Streptococcus pneumoniae
            TCH8431/19A]
 gi|327388991|gb|EGE87339.1| transcription-repair coupling factor [Streptococcus pneumoniae
            GA04375]
          Length = 1169

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|149020164|ref|ZP_01835138.1| transcription-repair coupling factor [Streptococcus pneumoniae
            SP23-BS72]
 gi|147930842|gb|EDK81823.1| transcription-repair coupling factor [Streptococcus pneumoniae
            SP23-BS72]
          Length = 1169

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 149/405 (36%), Positives = 228/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K   +   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGFGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|332199073|gb|EGJ13154.1| transcription-repair coupling factor [Streptococcus pneumoniae
            GA47901]
          Length = 1169

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|225857815|ref|YP_002739325.1| transcription-repair coupling factor [Streptococcus pneumoniae 70585]
 gi|225720446|gb|ACO16300.1| transcription-repair coupling factor [Streptococcus pneumoniae 70585]
          Length = 1169

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|148993579|ref|ZP_01823050.1| transcription-repair coupling factor [Streptococcus pneumoniae
            SP9-BS68]
 gi|168489341|ref|ZP_02713540.1| transcription-repair coupling factor [Streptococcus pneumoniae SP195]
 gi|147927800|gb|EDK78822.1| transcription-repair coupling factor [Streptococcus pneumoniae
            SP9-BS68]
 gi|183572243|gb|EDT92771.1| transcription-repair coupling factor [Streptococcus pneumoniae SP195]
 gi|332071709|gb|EGI82202.1| transcription-repair coupling factor [Streptococcus pneumoniae
            GA17570]
          Length = 1174

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|15899955|ref|NP_344559.1| transcription-repair coupling factor [Streptococcus pneumoniae TIGR4]
 gi|111658624|ref|ZP_01409274.1| hypothetical protein SpneT_02000214 [Streptococcus pneumoniae TIGR4]
 gi|14971470|gb|AAK74199.1| transcription-repair coupling factor [Streptococcus pneumoniae TIGR4]
          Length = 1169

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|332071328|gb|EGI81823.1| transcription-repair coupling factor [Streptococcus pneumoniae
            GA17545]
          Length = 1169

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|149007710|ref|ZP_01831319.1| transcription-repair coupling factor [Streptococcus pneumoniae
            SP18-BS74]
 gi|307126180|ref|YP_003878211.1| transcription-repair coupling factor [Streptococcus pneumoniae
            670-6B]
 gi|147760705|gb|EDK67677.1| transcription-repair coupling factor [Streptococcus pneumoniae
            SP18-BS74]
 gi|306483242|gb|ADM90111.1| transcription-repair coupling factor [Streptococcus pneumoniae
            670-6B]
          Length = 1169

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 151/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|262171148|ref|ZP_06038826.1| transcription-repair coupling factor [Vibrio mimicus MB-451]
 gi|261892224|gb|EEY38210.1| transcription-repair coupling factor [Vibrio mimicus MB-451]
          Length = 1156

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 147/383 (38%), Positives = 214/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ +A G+  I++GTH L  
Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 720

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 781 IATPPARRLAIKTFV--RQSEDSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + + + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 837 LVPE---------ARVTVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   G
Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970


>gi|330502559|ref|YP_004379428.1| transcription-repair coupling factor [Pseudomonas mendocina NK-01]
 gi|328916845|gb|AEB57676.1| transcription-repair coupling factor [Pseudomonas mendocina NK-01]
          Length = 1145

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 143/380 (37%), Positives = 215/380 (56%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++AI  +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 595 GFPFEETPDQQTAIDAVRNDMLAGKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAVL 654

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A++++A G+  I+IGTH L Q
Sbjct: 655 VPTTLLAQQHYNSFRDRFADWPVKVEVMSRFKSAKEVEGAVQQLAEGKVDIVIGTHKLLQ 714

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++++ L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 715 DDVKFHNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 774

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 775 IATPPARRLSVRTFVMEENK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 833

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + D E VM  F +    +L+A+T+IE GIDV  A+ III
Sbjct: 834 E---------ARIGIGHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIII 884

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   +++++  RL  +   +D   GF++
Sbjct: 885 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKSMTEDAQKRLEAIAGAQDLGAGFIL 944

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 945 ATHDLEIRGAGELLGDGQSG 964


>gi|308186433|ref|YP_003930564.1| Transcription-repair-coupling factor [Pantoea vagans C9-1]
 gi|308056943|gb|ADO09115.1| Transcription-repair-coupling factor [Pantoea vagans C9-1]
          Length = 1154

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 226/409 (55%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q    + PF  T  Q  AI  +L DM Q   M R++ 
Sbjct: 575 LLDIYAQRAAKTGFAFKHDREQYQLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 634

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+  +    N  + +E+++   
Sbjct: 635 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 694

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + + LE+ + G+  I+IGTH L    ++++ L L+IVDE+HRFGV+ + ++     
Sbjct: 695 TAKEQAQVLEQASEGKIDILIGTHKLLMSDLKWHDLGLLIVDEEHRFGVRHKERIKAMRA 754

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D+++ R + +L
Sbjct: 755 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDDLVIR-EAIL 810

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N     +R + L     + +AI HG+M + + E VM+ 
Sbjct: 811 REVLRGGQVYYLYNDVE-----NIEKAAQRLSDLVPE--ARVAIGHGQMRERELERVMND 863

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 864 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 923

Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            HP  ++ +++ RL  + + ED   GF +A  DL+ R  GE+LG +QSG
Sbjct: 924 PHPKSMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGDEQSG 972


>gi|262189663|ref|ZP_06048040.1| transcription-repair coupling factor [Vibrio cholerae CT 5369-93]
 gi|262034453|gb|EEY52816.1| transcription-repair coupling factor [Vibrio cholerae CT 5369-93]
          Length = 699

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 148/381 (38%), Positives = 214/381 (56%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P
Sbjct: 147 PFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVP 206

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQH+E  +    N  I VE+++       +++ L+ +A G+  I++GTH L    
Sbjct: 207 TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSE 266

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I 
Sbjct: 267 IRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA 326

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVV 504
             PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   +V
Sbjct: 327 TPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEKLV 382

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II
Sbjct: 383 PE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTII 433

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619
           ++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   GF 
Sbjct: 434 MDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFT 493

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG +QSG
Sbjct: 494 LATHDLEIRGAGELLGEEQSG 514


>gi|239993080|ref|ZP_04713604.1| transcription-repair coupling factor [Alteromonas macleodii ATCC
           27126]
          Length = 984

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 158/428 (36%), Positives = 228/428 (53%), Gaps = 19/428 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           WT   ++       +A ++  +  R+  K      IN +    Q    + PF  T  Q  
Sbjct: 387 WTKAKQKAAEKVRDVAAELLDVYARRAAKPGFAYKINWDDY--QAFSDSFPFEETPDQAQ 444

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  ++ DM   + M R++ GDVG GKT VA+ A   A  AG Q  I+ P  +LAQQHYE
Sbjct: 445 AIAAVMHDMGSPSAMDRLVCGDVGFGKTEVAMRAAFLAANAGKQVAILVPTTLLAQQHYE 504

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K         +E+++  +    ++  +ERI  G+  I++GTH L    I+Y  L LVI
Sbjct: 505 NFKDRFAAWPFEIEVMSRFVSGKAQKSVVERIGEGKVDIVVGTHKLLSSDIKYKDLGLVI 564

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV+Q+ KL        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 565 IDEEHRFGVRQKEKLKSLRADVDILTLTATPIPRTLNMALSGMRDLSIIATAPARRLSIK 624

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           T +   N+  I E I R    +  G + Y++  ++    +S  R+  E    + E   + 
Sbjct: 625 TFVQQRNKAVIREAIMR---EILRGGQVYFLHNEV----DSIARTAEEIAEIVPE---AR 674

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA+ HG+M + + E VM  F +    +L+ TT+IE GIDV  A+ II++ A+H GLAQLH
Sbjct: 675 IAVGHGQMRERELEGVMSDFYHQRYNVLVCTTIIETGIDVPSANTIIMDRADHLGLAQLH 734

Query: 578 QLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR    +   LL  HP  ++K++  RL  +   ED   GF +A  DL+ R  GE
Sbjct: 735 QLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISQLEDLGAGFALATHDLEIRGAGE 794

Query: 633 ILGIKQSG 640
           +LG  QSG
Sbjct: 795 LLGDDQSG 802


>gi|314937290|ref|ZP_07844632.1| transcription-repair coupling factor [Staphylococcus hominis subsp.
            hominis C80]
 gi|313654586|gb|EFS18336.1| transcription-repair coupling factor [Staphylococcus hominis subsp.
            hominis C80]
          Length = 1169

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 155/417 (37%), Positives = 232/417 (55%), Gaps = 21/417 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  +I++I +DM ++  M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 615  DFPYELTPDQAKSIEEIKEDMEKERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 674

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE + +  Q+  + +++I+        R+  E +  G   II+GTH L  
Sbjct: 675  VPTTILAQQHYETLIERMQDFPVEIQLISRFRTAKEVRETKEGLKSGYVDIIVGTHKLLS 734

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              IQY  L L+IVDE+ RFGV+ + ++    T   VL +TATPIPRTL ++ LG  D+S 
Sbjct: 735  KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPRTLHMSMLGVRDLSV 794

Query: 448  ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 795  IETPPENRFPVQTYVLEQNSNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 843

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L      ++IA+ HG+M++ D E  M SF NG   +L+ TT+IE G+DV +A+ +I
Sbjct: 844  KREQLQMLMPEANIAVAHGQMTERDLEETMLSFINGEYDILVTTTIIETGVDVPNANTLI 903

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFL 619
            IE A+HFGL+QL+QLRGRVGR   I     L+  +  L++ +  RL  +K  TE   GF 
Sbjct: 904  IEEADHFGLSQLYQLRGRVGRSSRIGYAYFLHSTNKVLTETAEERLQAIKEFTELGSGFK 963

Query: 620  IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            IA  DL  R  G +LG +Q G    +    +L+  +LE A  + + I  + PD   V
Sbjct: 964  IAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGITEEVPDAPDV 1018


>gi|213622278|ref|ZP_03375061.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 281

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/261 (46%), Positives = 171/261 (65%), Gaps = 2/261 (0%)

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           K  Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I
Sbjct: 1   KGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEII 60

Query: 473 ERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
           +R++    +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K
Sbjct: 61  DRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEK 120

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           ++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S
Sbjct: 121 QAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVAS 180

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A   
Sbjct: 181 HCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLL 240

Query: 651 LHDSLLEIARKDAKHILTQDP 671
              +++   ++ A+HI  + P
Sbjct: 241 RDQAMIPEVQRIARHIHERYP 261


>gi|114047309|ref|YP_737859.1| transcription-repair coupling factor [Shewanella sp. MR-7]
 gi|113888751|gb|ABI42802.1| transcription-repair coupling factor [Shewanella sp. MR-7]
          Length = 1160

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 153/417 (36%), Positives = 231/417 (55%), Gaps = 25/417 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A ++  +  R+Q +      IN E + AQ   +  PF  T  QESAI  +L DM     
Sbjct: 574 VAAELLDVYARRQARPGESCDINDE-EYAQ-FAQGFPFEETVDQESAIHAVLADMQSPVA 631

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQHYE  K    +  +++E
Sbjct: 632 MDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPVVIE 691

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +++       + + L+++  G+  I+IGTH L Q   ++  L L+I+DE+HRFGV+Q+ K
Sbjct: 692 VMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEK 751

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           +        +L +TATPIPRTL +   G  D+S I   PA R  +KT +    R  +   
Sbjct: 752 IKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV----RESDPAT 807

Query: 474 RLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
             + +L E   G + Y++   +E  EK   +  +++           + + + HG+M + 
Sbjct: 808 VREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPE---------ARVVVAHGQMRER 858

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D E VM  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGLAQLHQLRGRVGR   
Sbjct: 859 DLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQLRGRVGRSHH 918

Query: 589 ISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            +   L+  HP  ++ ++  RL  +   ED   GF++A +DL+ R  GE+LG +QSG
Sbjct: 919 QAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSG 975


>gi|307544803|ref|YP_003897282.1| transcription-repair coupling factor [Halomonas elongata DSM 2581]
 gi|307216827|emb|CBV42097.1| K03723 transcription-repair coupling factor (superfamily II
           helicase) [Halomonas elongata DSM 2581]
          Length = 1148

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 141/383 (36%), Positives = 219/383 (57%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q  AI+ +L DM+    M R++ GDVG GKT VA+ A   AV +G Q V++
Sbjct: 595 SFPFEETPDQRVAIQSVLADMTAPRPMDRVVCGDVGFGKTEVAMRAAFLAVHSGRQVVVL 654

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QHYE  +    +T + +E+++       +  A++RI  G+A I+IGTH L  
Sbjct: 655 VPTTLLARQHYENFRDRFADTAVNIELVSRFTSGQGQSAAMQRIEDGRADIVIGTHKLLS 714

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
            S+++  + L+I+DE+HRFGV Q+ +L Q      +L +TATPIPRTL +   G  D+S 
Sbjct: 715 KSMRFANMGLLIIDEEHRFGVAQKERLKQLRAEVDILTLTATPIPRTLNMAMSGIRDLSI 774

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  +KT +    R + VI+  + +L E   G + Y++  +++  E      R 
Sbjct: 775 IATPPARRLSVKTFV--QQRDESVIK--EAILREILRGGQVYFLHNEVKTIETAAETVRE 830

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + + + HG++ +   E VM  F +    +L+ +T+IE GIDV  A+ 
Sbjct: 831 LVP---------DARVGVAHGQLPERSLERVMSDFYHKRFNVLVCSTIIETGIDVPSANT 881

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           I+I+ A+ FGLAQLHQLRGRVGR    +   LL  PP  +++++  RL  +  +ED   G
Sbjct: 882 IVIQRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPRAMTRDATKRLEAIAQSEDLGAG 941

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  D++ R  GE+LG +QSG
Sbjct: 942 FTLASHDMEIRGAGELLGDEQSG 964


>gi|291617056|ref|YP_003519798.1| Mfd [Pantoea ananatis LMG 20103]
 gi|291152086|gb|ADD76670.1| Mfd [Pantoea ananatis LMG 20103]
 gi|327393507|dbj|BAK10929.1| transcription-repair coupling factor Mfd [Pantoea ananatis AJ13355]
          Length = 1156

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 598 QLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNK 657

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L+  + G+  I+IGT
Sbjct: 658 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAREQNQILQEASEGKIDILIGT 717

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L    I+++ L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 718 HKLLMSDIKWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 777

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D+++ R + +L E   G + Y++   +E     N
Sbjct: 778 RDLSIIATPPARRLAVKTF---VREFDDLVIR-EAILREILRGGQVYYLYNDVE-----N 828

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                +R   L     + +AI HG+M + D E VM+ F +    +L+ TT+IE GID+  
Sbjct: 829 IEKAAQRLTELVPE--ARVAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPT 886

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 887 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 946

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 947 GAGFALATHDLEIRGAGELLGEEQSG 972


>gi|229523905|ref|ZP_04413310.1| transcription-repair coupling factor [Vibrio cholerae bv. albensis
           VL426]
 gi|229337486|gb|EEO02503.1| transcription-repair coupling factor [Vibrio cholerae bv. albensis
           VL426]
          Length = 1157

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 147/383 (38%), Positives = 213/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 603 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 662

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ +A G+  I++GTH L  
Sbjct: 663 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 722

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 723 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 782

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +    R  E     + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 783 IATPPARRLAIKTFV----RQSENSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEK 838

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 839 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 889

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   G
Sbjct: 890 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 949

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 950 FTLATHDLEIRGAGELLGEEQSG 972


>gi|259047960|ref|ZP_05738361.1| transcription-repair coupling factor [Granulicatella adiacens ATCC
           49175]
 gi|259035380|gb|EEW36635.1| transcription-repair coupling factor [Granulicatella adiacens ATCC
           49175]
          Length = 1180

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 149/432 (34%), Positives = 246/432 (56%), Gaps = 25/432 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  A  E +A ++  L  ++  +K  G   + +    Q+  +  P++ T+ Q 
Sbjct: 570 EWAKTKRKVAAKIEDIADELIELYAKRDAEK--GYAFSRDTVEQQEFEQAFPYTETQDQL 627

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            ++ +I +DM +   M R+L GDVG GKT VA+ A+  AV  G QA ++ P  ILA+QHY
Sbjct: 628 RSVAEIKEDMQKDKPMDRLLVGDVGYGKTEVAMRAVFKAVMDGKQAAVLVPTTILAEQHY 687

Query: 339 E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           E F+++++ +    + +++    +  + + ++++  G   I+IGTH L    +Q+  L L
Sbjct: 688 ENFVQRFS-DYPFKIGLLSRFRSKKEQEETIKKLRKGSVDIVIGTHRLLSKDVQFLDLGL 746

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P
Sbjct: 747 LIVDEEQRFGVKHKERLKQLKSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYP 806

Query: 458 IKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEH 513
           ++T ++  N   I + IER    ++ G + +++  ++E  EKK    R +V         
Sbjct: 807 VQTFVMEQNPMTIRDGIER---EMARGGQVFYLYNRVETIEKKADELRVLVP-------- 855

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               + +IHG+MS+   E+++  F  G   +L+ TT+IE G+D+ + + + IENA++ GL
Sbjct: 856 -GCRVGVIHGQMSETTLENILFQFIEGEYDVLVTTTIIETGVDIPNVNTLFIENADYMGL 914

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQR 628
           +QL+QLRGRVGR   I+   L+Y P   L++ S  RL  +++ TE   GF IA  DL  R
Sbjct: 915 SQLYQLRGRVGRTNRIAYAYLMYQPDKVLTEVSEKRLQAMRDFTELGSGFKIAMRDLSIR 974

Query: 629 KEGEILGIKQSG 640
             G +LG +Q G
Sbjct: 975 GAGNLLGKQQHG 986


>gi|153820314|ref|ZP_01972981.1| transcription-repair coupling factor [Vibrio cholerae NCTC 8457]
 gi|126509143|gb|EAZ71737.1| transcription-repair coupling factor [Vibrio cholerae NCTC 8457]
          Length = 691

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 148/381 (38%), Positives = 214/381 (56%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P
Sbjct: 139 PFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVP 198

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQH+E  +    N  I VE+++       +++ L+ +A G+  I++GTH L    
Sbjct: 199 TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSE 258

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I 
Sbjct: 259 IRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA 318

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVV 504
             PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   +V
Sbjct: 319 TPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEKLV 374

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II
Sbjct: 375 PE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTII 425

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619
           ++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   GF 
Sbjct: 426 MDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFT 485

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG +QSG
Sbjct: 486 LATHDLEIRGAGELLGEEQSG 506


>gi|324113535|gb|EGC07510.1| transcription-repair coupling protein [Escherichia fergusonii B253]
          Length = 1148

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q+ +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQNDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|323976513|gb|EGB71601.1| transcription-repair coupling protein [Escherichia coli TW10509]
          Length = 1148

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q+ +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQNDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|113970068|ref|YP_733861.1| transcription-repair coupling factor [Shewanella sp. MR-4]
 gi|113884752|gb|ABI38804.1| transcription-repair coupling factor [Shewanella sp. MR-4]
          Length = 1160

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 153/417 (36%), Positives = 231/417 (55%), Gaps = 25/417 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A ++  +  R+Q +      IN E + AQ   +  PF  T  QESAI  +L DM     
Sbjct: 574 VAAELLDVYARRQARPGESCDINDE-EYAQ-FAQGFPFEETVDQESAIHAVLADMQSPVA 631

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQHYE  K    +  +++E
Sbjct: 632 MDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPVVIE 691

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +++       + + L+++  G+  I+IGTH L Q   ++  L L+I+DE+HRFGV+Q+ K
Sbjct: 692 VMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEK 751

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           +        +L +TATPIPRTL +   G  D+S I   PA R  +KT +    R  +   
Sbjct: 752 IKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV----RESDPAT 807

Query: 474 RLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
             + +L E   G + Y++   +E  EK   +  +++           + + + HG+M + 
Sbjct: 808 VREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPE---------ARVVVAHGQMRER 858

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D E VM  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGLAQLHQLRGRVGR   
Sbjct: 859 DLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQLRGRVGRSHH 918

Query: 589 ISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            +   L+  HP  ++ ++  RL  +   ED   GF++A +DL+ R  GE+LG +QSG
Sbjct: 919 QAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSG 975


>gi|323492540|ref|ZP_08097688.1| transcription-repair coupling factor [Vibrio brasiliensis LMG
           20546]
 gi|323313327|gb|EGA66443.1| transcription-repair coupling factor [Vibrio brasiliensis LMG
           20546]
          Length = 1153

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 145/383 (37%), Positives = 216/383 (56%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  ++ DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 599 GFPFEETDDQSMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ I  G+  +++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKQVLQDIEEGKVDLVVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 NDIKFKDLGLLIVDEEHRFGVRQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +    R D V+   + VL E   G + Y++  Q+E  EK  ++   
Sbjct: 779 IATPPARRLAIKTFV--RQRDDAVVR--EAVLREIMRGGQVYFLHNQVETIEKVAADLEK 834

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + + + HG+M + + E +M+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 835 LVPE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANT 885

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617
           II++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   G
Sbjct: 886 IIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAG 945

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 946 FTLATHDLEIRGAGELLGDEQSG 968


>gi|77411312|ref|ZP_00787661.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
 gi|77162648|gb|EAO73610.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
          Length = 1165

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 159/459 (34%), Positives = 250/459 (54%), Gaps = 30/459 (6%)

Query: 224  ARERLA--YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            A++R+A   +++    + L   R Q +   G   + +  +      +  +  T+ Q  +I
Sbjct: 564  AKQRVAKQVEDIADDLLKLYAERSQLQ---GFAFSPDDNMQNDFDNDFAYVETEDQLRSI 620

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            K+I QDM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH+E  
Sbjct: 621  KEIKQDMEGNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHFENF 680

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            K+   N  + V++++    +  +   L+R++ GQ  IIIGTH L    + +  L L+++D
Sbjct: 681  KERFSNYPVTVDVLSRFRSKKEQTDTLKRLSKGQVDIIIGTHRLLSQDVVFSDLGLIVID 740

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P  R P++T 
Sbjct: 741  EEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTY 800

Query: 462  IIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517
            ++  N   + E I R    +  G + +++  +++  ++K S  + +V           +S
Sbjct: 801  VLETNPGLVREAIIR---EIDRGGQVFYVYNKVDTIDQKVSELQELVPE---------AS 848

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + +ENA+H GL+ L+
Sbjct: 849  IGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENADHMGLSTLY 908

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G 
Sbjct: 909  QLRGRVGRSNRIAYAYLMYRPDKVLTEISEKRLDAIKGFTELGSGFKIAMRDLSIRGAGN 968

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
            ILG  QSG    +    E++  LLE  IA K  K ++ Q
Sbjct: 969  ILGASQSGFIDSV--GFEMYSQLLEQAIATKQGKSLIRQ 1005


>gi|325497055|gb|EGC94914.1| transcription-repair coupling factor [Escherichia fergusonii
           ECD227]
          Length = 1148

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q+ +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQNDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|308050222|ref|YP_003913788.1| transcription-repair coupling factor [Ferrimonas balearica DSM
           9799]
 gi|307632412|gb|ADN76714.1| transcription-repair coupling factor [Ferrimonas balearica DSM
           9799]
          Length = 1156

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 156/426 (36%), Positives = 234/426 (54%), Gaps = 16/426 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQE 278
           W    R+       +A ++  +  R++ K   G P++ +E    Q+     PF  T  Q 
Sbjct: 554 WDKARRKAAEKVRDVAAELLDIYARREAKPGHGFPMDELE---YQRFSAAFPFEETVDQA 610

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI  +L+DM++   M R++ GDVG GKT VA+ A   AV  G Q  ++ P  +LAQQHY
Sbjct: 611 AAIGAVLRDMTKPQAMDRLVCGDVGFGKTEVAMRAAFVAVNGGKQVAVLVPTTLLAQQHY 670

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E  +    +  + VE+++     + ++K LE++A G+  I+IGTH L Q  I +  L L+
Sbjct: 671 ENFRDRFADWPVRVEVMSRFRTASEQKKVLEQLAEGKVDILIGTHKLLQSEINFPDLGLL 730

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   P  R  +
Sbjct: 731 IVDEEHRFGVRQKEKIKALRAEVDILTLTATPIPRTLNMAMSGMRDLSIIATAPKRRLSV 790

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           KT + P      V E L   +  G + Y++   +E  +E       +    L     + +
Sbjct: 791 KTFVRP-QEGALVREALMREILRGGQVYYLHNSVETIQE-----CADELAKLVPE--ARV 842

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I HG+M + + E VM  F +G   LL+ TT+IE GID+  A+ I+IE A+ FGLAQLHQ
Sbjct: 843 GIAHGQMRERELEQVMSDFHHGRFNLLVCTTIIETGIDIPSANTILIERADKFGLAQLHQ 902

Query: 579 LRGRVGRGEEISSCILLY-HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           LRGRVGR    +   LL     L+K++  RL  ++  +D   GFL+A +DL+ R  GE+L
Sbjct: 903 LRGRVGRSHHQAYAYLLTPAKKLAKDAAKRLEAIEQLDDLGAGFLLATQDLEIRGAGELL 962

Query: 635 GIKQSG 640
           G +QSG
Sbjct: 963 GDEQSG 968


>gi|319940213|ref|ZP_08014566.1| transcription-repair coupling factor [Streptococcus anginosus
            1_2_62CV]
 gi|319810684|gb|EFW07014.1| transcription-repair coupling factor [Streptococcus anginosus
            1_2_62CV]
          Length = 1164

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 159/440 (36%), Positives = 241/440 (54%), Gaps = 30/440 (6%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I L   R Q K   G   + +    Q+   + P+  T+ Q  +IK++ +DM   + M R+
Sbjct: 580  IKLYAERSQLK---GFAFSSDDSYQQEFDNDFPYVETEDQLRSIKEVKKDMESDHPMDRL 636

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            L GDVG GKT VA+ A   AV    Q  I+ P  +LAQQHY   K+   +  I +E+++ 
Sbjct: 637  LVGDVGFGKTEVAMRAAFKAVNDHKQVAILVPTTVLAQQHYTNFKERFNDFPINIEVLSR 696

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               ++ ++  LE++  GQ  IIIGTH L    I +  L L+++DE+ RFGV+ + KL + 
Sbjct: 697  FKSKSEQKTILEKLKKGQVDIIIGTHRLLSKDIVFADLGLIVIDEEQRFGVKHKEKLKEL 756

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI---DEVIER 474
             T   VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N     D V+  
Sbjct: 757  KTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNATVIRDAVLRE 816

Query: 475  LKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
                ++ G + Y++  +++  E+K S  + ++           +SI  +HG+MS+I  E+
Sbjct: 817  ----MNRGGQVYYLYNKVDTMEQKVSELKELIPE---------ASIGYVHGQMSEILLEN 863

Query: 533  VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
             +  F NG   LL+ TT+IE G+D+ + + + IENA++ GL+ L+QLRGRVGR   I+  
Sbjct: 864  TLLDFINGEYDLLVTTTIIETGVDIPNVNTLFIENADYMGLSTLYQLRGRVGRSNRIAYA 923

Query: 593  ILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +  
Sbjct: 924  YLMYRPDKALTEISEKRLETIKGFTELGSGFKIAMRDLSIRGAGNILGSSQSGFIDSV-- 981

Query: 648  QPELHDSLLE--IARKDAKH 665
              E++  LLE  IA+K  K 
Sbjct: 982  GFEMYSQLLEEAIAKKQGKE 1001


>gi|218548644|ref|YP_002382435.1| transcription-repair coupling factor [Escherichia fergusonii ATCC
           35469]
 gi|218356185|emb|CAQ88802.1| transcription-repair coupling factor [Escherichia fergusonii ATCC
           35469]
          Length = 1148

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q+ +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQNDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|319746177|gb|EFV98447.1| transcription-repair coupling factor [Streptococcus agalactiae ATCC
            13813]
          Length = 1165

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 159/459 (34%), Positives = 250/459 (54%), Gaps = 30/459 (6%)

Query: 224  ARERLA--YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            A++R+A   +++    + L   R Q +   G   + +  +      +  +  T+ Q  +I
Sbjct: 564  AKQRVAKQVEDIADDLLKLYAERSQLQ---GFAFSPDDNMQNDFDNDFAYVETEDQLRSI 620

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            K+I QDM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH+E  
Sbjct: 621  KEIKQDMEGNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHFENF 680

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            K+   N  + V++++    +  +   L+R++ GQ  IIIGTH L    + +  L L+++D
Sbjct: 681  KERFSNYPVTVDVLSRFRSKKEQTDTLKRLSKGQVDIIIGTHRLLSQDVVFSDLGLIVID 740

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P  R P++T 
Sbjct: 741  EEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTY 800

Query: 462  IIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517
            ++  N   + E I R    +  G + +++  +++  ++K S  + +V           +S
Sbjct: 801  VLETNPGLVREAIIR---EIDRGGQVFYVYNKVDTIDQKVSELQELVPE---------AS 848

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + +ENA+H GL+ L+
Sbjct: 849  IGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENADHMGLSTLY 908

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G 
Sbjct: 909  QLRGRVGRSNRIAYAYLMYRPDKVLTEISEKRLDAIKGFTELGSGFKIAMRDLSIRGAGN 968

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
            ILG  QSG    +    E++  LLE  IA K  K ++ Q
Sbjct: 969  ILGASQSGFIDSV--GFEMYSQLLEQAIATKQGKSLIRQ 1005


>gi|330829926|ref|YP_004392878.1| transcription-repair coupling factor [Aeromonas veronii B565]
 gi|328805062|gb|AEB50261.1| Transcription-repair coupling factor [Aeromonas veronii B565]
          Length = 1157

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 148/382 (38%), Positives = 211/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q +AI  +L DM Q   M R++ GDVG GKT VA+ A   AV  G Q  ++
Sbjct: 606 SFPFEETDDQLNAINAVLGDMCQAKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAVL 665

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY+  +    N  + VE+++       +   ++ +A G+  IIIGTH L  
Sbjct: 666 VPTTLLAQQHYDNFRDRFANWPVRVEVLSRFRSAKEQSAVMKELAEGKVDIIIGTHKLLG 725

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             + +  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 726 SELTFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMRDLSI 785

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  IKT    + + +  + R  V+  L  G + Y++   +E  EK  ++   +
Sbjct: 786 IATPPAKRLAIKTF---VRQHEPAVVREAVLRELKRGGQVYYLHNDVESIEKCAADLAEL 842

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V           + I I HG+M + D E +M  F +    LL+ TT+IE GIDV  A+ I
Sbjct: 843 VPE---------ARIGIAHGQMRERDLERIMSDFYHQRFNLLVCTTIIETGIDVPSANTI 893

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPL-SKNSYTRLSVLKNTED---GF 618
           I++ A+H GLAQLHQLRGRVGR    +   LL  HP L +K++  RL  + + ED   GF
Sbjct: 894 IMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKLMTKDAAKRLEAIASLEDLGAGF 953

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG  QSG
Sbjct: 954 ALATHDLEIRGAGELLGDDQSG 975


>gi|300214981|gb|ADJ79397.1| Transcription-repair coupling factor [Lactobacillus salivarius CECT
           5713]
          Length = 908

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 144/430 (33%), Positives = 238/430 (55%), Gaps = 19/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R      E +A ++  L  +++ +K  G     +    ++     P++ T  Q 
Sbjct: 302 EWAKTKRRVANKIEDIADELVDLYAKREAEK--GYAFTPDDSYQKEFEDAFPYTETPDQL 359

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + K+I QDM +   M R+L GDVG GKT VAL A   AV+ G Q   +AP  +LAQQHY
Sbjct: 360 RSAKEIKQDMEKTKPMDRLLIGDVGYGKTEVALRAAFKAVQDGKQVAFLAPTTVLAQQHY 419

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +++  +N  + + I++        ++ +E +  G+  I++GTH L    +++  L L+
Sbjct: 420 ETMEQRFENFPVEIGILSRFNTAKEIKETIENLETGKLDIVVGTHRLLSKDVKFADLGLL 479

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L +  T+  VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 480 IIDEEQRFGVKHKERLKELKTSVDVLTLTATPIPRTLNMSMLGVRDLSVIETAPMNRYPI 539

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
           +T +I  N    +++ +K  +  G + +++  +++  EK  S   S+V           +
Sbjct: 540 QTYVIEKN-YGVIVDGIKREIERGGQVFYLHNRVDDIEKVASELESLVPE---------A 589

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A IHGRM++   E+++  F +G   +L+ TT+IE G+D+ + + + ++NA+  GL+QL
Sbjct: 590 KVAYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRMGLSQL 649

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGRVGR   I+    +Y P   L++ +  RL  +K+ TE   GF IA  DL  R  G
Sbjct: 650 YQLRGRVGRSNRIAYAYFMYQPNKVLTEVAEKRLEAIKDFTELGSGFKIAMRDLSIRGAG 709

Query: 632 EILGIKQSGM 641
            +LG +Q G 
Sbjct: 710 NLLGKQQHGF 719


>gi|261494132|ref|ZP_05990635.1| transcription repair coupling factor [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496027|ref|ZP_05992437.1| transcription repair coupling factor [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261308277|gb|EEY09570.1| transcription repair coupling factor [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310298|gb|EEY11498.1| transcription repair coupling factor [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 1177

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 150/380 (39%), Positives = 216/380 (56%), Gaps = 19/380 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q+ AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q VI+A
Sbjct: 629 FPYEETDDQKIAINAVISDMCQAKAMDRLVCGDVGFGKTEVAIRATFLAVMNHKQVVILA 688

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQHYE  K    N  + VE+++       ++  L+ +A G+  I++GTH L QD
Sbjct: 689 PTTLLAQQHYENFKDRFANYPVNVEVLSRFKTAKEQKTILQNVAEGKVDILVGTHKLLQD 748

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + +  L L+++DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I
Sbjct: 749 DVAFRDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSII 808

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
              PA R  IKT    + + DE++ R + +L E   G + Y++   +     +   +  E
Sbjct: 809 ASPPARRLLIKTF---VRQSDEMVIR-EAILREILRGGQVYYLHNDV-----ATIENCAE 859

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +   L     + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ III
Sbjct: 860 KLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 917

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRL---SVLKNTEDGFLI 620
           E A+ FGLAQLHQLRGRVGR    +   +L  HP  L+K++  RL   S + N   GF +
Sbjct: 918 ERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPHPKTLTKDAEQRLEAMSTIDNLGAGFAL 977

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG +QSG
Sbjct: 978 ATHDLEIRGAGELLGSEQSG 997


>gi|323967055|gb|EGB62481.1| transcription-repair coupling protein [Escherichia coli M863]
 gi|327253513|gb|EGE65151.1| transcription-repair coupling factor [Escherichia coli STEC_7v]
          Length = 1148

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q+ +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQNDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERMAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|261822040|ref|YP_003260146.1| transcription-repair coupling factor [Pectobacterium wasabiae
           WPP163]
 gi|261606053|gb|ACX88539.1| transcription-repair coupling factor [Pectobacterium wasabiae
           WPP163]
          Length = 1150

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 211/386 (54%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 592 QLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 651

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    N  + +E+I+       + + LE    G+  I+IGT
Sbjct: 652 QVAVLVPTTLLAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQILEETQEGKVDILIGT 711

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 712 HKLLQSDVRWRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 771

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 772 RDLSIIATPPARRLAVKTF---VREYDNLMVR-EAILRETLRGGQVYYLYNDVE-----N 822

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                +R   L     + I I HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 823 IEKATQRLAELVPE--ARITIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPS 880

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  PP  +S ++  RL  + + ED 
Sbjct: 881 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAMSTDAQKRLEAIASLEDL 940

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 941 GAGFALATHDLEIRGAGELLGDDQSG 966


>gi|332092875|gb|EGI97943.1| transcription-repair coupling factor [Shigella dysenteriae 155-74]
          Length = 1148

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q+  M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQQLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAITSLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|224128810|ref|XP_002320427.1| predicted protein [Populus trichocarpa]
 gi|222861200|gb|EEE98742.1| predicted protein [Populus trichocarpa]
          Length = 817

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 143/380 (37%), Positives = 226/380 (59%), Gaps = 17/380 (4%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            P+ PT  Q+ A  D+ +D++Q+   M R++ GDVG GKT VAL A+   V AG QA+++
Sbjct: 260 FPYEPTPDQKLAFIDVERDLNQRETPMDRLICGDVGFGKTEVALRAIFCIVSAGKQAMVL 319

Query: 328 APIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           AP  +LA+QH++ I +++++ + I V +++    +A +   L  I HG   II+GTH+L 
Sbjct: 320 APTIVLAKQHFDVISERFSKYSHIKVALLSRFQSKAEKEMYLNMIEHGHLDIIVGTHSLL 379

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            + + Y  L L++VDE+ RFGV+Q+ K+    T+  VL ++ATPIPRTL L   G  D S
Sbjct: 380 GNRVVYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDAS 439

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I+  P  R PIKT +   N+ D++I  +K  L  G + +++ P+I+  +E      V+ 
Sbjct: 440 LISTPPPERVPIKTHLSAYNK-DKLISAIKYELDRGGQVFYVLPRIKGLEE------VKD 492

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L + F +  IA+ HG+      E  M+ F  G  K+LI T ++E G+D+ +A+ III
Sbjct: 493 F--LEQSFPNVEIAVAHGQQYSKQLEDTMEQFAQGEIKILICTNIVESGLDIQNANTIII 550

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLI 620
           ++ + FGLAQL+QLRGRVGR ++ +   L Y     L+  +  RL+ L+   +   GF +
Sbjct: 551 QDVQLFGLAQLYQLRGRVGRADKEAHAHLFYPDKSMLTDQALERLAALEECRELGQGFQL 610

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           AE D+  R  G I G +Q+G
Sbjct: 611 AERDMGIRGFGTIFGEQQTG 630


>gi|270261435|ref|ZP_06189708.1| hypothetical protein SOD_a06670 [Serratia odorifera 4Rx13]
 gi|270044919|gb|EFA18010.1| hypothetical protein SOD_a06670 [Serratia odorifera 4Rx13]
          Length = 1159

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   ++ PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE G 
Sbjct: 601 QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGK 660

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +       I +E+++       +++ ++    G+  IIIGT
Sbjct: 661 QVAVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFRSAKEQQQIMDDAVDGKVDIIIGT 720

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 721 HKLLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 780

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 781 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREVLRGGQVYYLYNDVE-----N 831

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                E+   L     + IAI HG+M + D E VM+ F +    +L+ TT+IE GID+  
Sbjct: 832 IEKAAEKLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 889

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL   P  +S +++ RL  + + ED 
Sbjct: 890 ANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAHKRLEAIASLEDL 949

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 950 GAGFALATHDLEIRGAGELLGEDQSG 975


>gi|170682845|ref|YP_001744064.1| transcription-repair coupling factor [Escherichia coli SMS-3-5]
 gi|170520563|gb|ACB18741.1| transcription-repair coupling factor [Escherichia coli SMS-3-5]
          Length = 1148

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q+ +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQNDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|153000915|ref|YP_001366596.1| transcription-repair coupling factor [Shewanella baltica OS185]
 gi|151365533|gb|ABS08533.1| transcription-repair coupling factor [Shewanella baltica OS185]
          Length = 1162

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 164/461 (35%), Positives = 248/461 (53%), Gaps = 27/461 (5%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +A ++  +  R+Q +      I+ E + AQ   R  PF  T  QESAI  +L DM     
Sbjct: 575  VAAELLDVYARRQSRPGESCEID-EDEYAQ-FARGFPFEETVDQESAIIAVLADMQSPTA 632

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQHYE  K    +  ++ E
Sbjct: 633  MDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPVVTE 692

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            +++       + + L+++  G+  I+IGTH L Q   ++  L L+I+DE+HRFGV+Q+ K
Sbjct: 693  VMSRFRTAKEQTQVLQQLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEK 752

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
            +        +L +TATPIPRTL +   G  D+S I   PA R  +KT +    R  +   
Sbjct: 753  IKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV----RESDPAT 808

Query: 474  RLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
              + +L E   G + Y++   + E  E   + +++          + + + HG+M + D 
Sbjct: 809  VREAILREILRGGQVYYLHNNV-ESIEKCAQGIIDLLPE------ARVVVAHGQMRERDL 861

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E VM  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGLAQLHQLRGRVGR    +
Sbjct: 862  ERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQLRGRVGRSHHQA 921

Query: 591  SCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG-MPKF 644
               L+  HP  ++ ++  RL  +   ED   GF++A +DL+ R  GE+LG +QSG + K 
Sbjct: 922  YAYLMTPHPKRMTPDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKI 981

Query: 645  LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
              +   L+  +LE A K  K    ++P L  +  Q   I L
Sbjct: 982  GFS---LYMEMLEAAVKALKQ--GKEPSLAQMLNQQCEIEL 1017


>gi|152978238|ref|YP_001343867.1| transcription-repair coupling factor [Actinobacillus succinogenes
           130Z]
 gi|150839961|gb|ABR73932.1| transcription-repair coupling factor [Actinobacillus succinogenes
           130Z]
          Length = 1148

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 148/409 (36%), Positives = 230/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     E +  Q      PF  T  Q  AI  ++ DM Q   M R++ 
Sbjct: 572 LLDVYAQREAQKGFAFQYEREEFQAFSATFPFEETFDQALAINAVISDMCQPKAMDRLIC 631

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  +    N  + VE+++   
Sbjct: 632 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFRDRFANLPVNVEVLSRFK 691

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ L  +A G+  I+IGTH L Q  ++++ L L+I+DE+HRFGV+Q+ ++ Q   
Sbjct: 692 TAKEQKRVLADLADGKVDILIGTHKLIQSDVKFHDLGLLIIDEEHRFGVRQKERIKQLRA 751

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D++  R + +L
Sbjct: 752 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLTIKTF---VRQQDDLTVR-EAIL 807

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 808 REILRGGQVYYLHNDV-----ASIENCAEKLTALVPE--ARVTVGHGQMRERELERVMTD 860

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A++FGLAQLHQLRGRVGR    +   LL 
Sbjct: 861 FYHQRFNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQAYAYLLT 920

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L++ ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 921 PPPKLMTKDALKRLEALESLDNLGAGFVLATHDLEIRGAGELLGSEQSG 969


>gi|217973128|ref|YP_002357879.1| transcription-repair coupling factor [Shewanella baltica OS223]
 gi|217498263|gb|ACK46456.1| transcription-repair coupling factor [Shewanella baltica OS223]
          Length = 1162

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 157/428 (36%), Positives = 233/428 (54%), Gaps = 25/428 (5%)

Query: 267  RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            R  PF  T  QESAI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V+
Sbjct: 606  RGFPFEETVDQESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVV 665

Query: 327  MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            + P  +LAQQHYE  K    +  ++ E+++       + + L+++  G+  I+IGTH L 
Sbjct: 666  LVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLQQLEEGKVDIVIGTHKLL 725

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            Q   ++  L L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S
Sbjct: 726  QSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLS 785

Query: 447  KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSV 503
             I   PA R  +KT +    R  +     + +L E   G + Y++   + E  E   + +
Sbjct: 786  IIATPPAKRLAVKTFV----RESDPATVREAILREILRGGQVYYLHNNV-ESIEKCAQGI 840

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            ++          + + + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ I
Sbjct: 841  IDLLPE------ARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTI 894

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GF 618
            IIE A+ FGLAQLHQLRGRVGR    +   L+  HP  ++ ++  RL  +   ED   GF
Sbjct: 895  IIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGF 954

Query: 619  LIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            ++A +DL+ R  GE+LG +QSG + K   +   L+  +LE A K  K    ++P L  + 
Sbjct: 955  MLATQDLEIRGAGELLGDEQSGHISKIGFS---LYMEMLEAAVKALKQ--GKEPSLAQML 1009

Query: 678  GQSIRILL 685
             Q   I L
Sbjct: 1010 NQQCEIEL 1017


>gi|238795991|ref|ZP_04639503.1| Transcription-repair-coupling factor [Yersinia mollaretii ATCC
           43969]
 gi|238720196|gb|EEQ12000.1| Transcription-repair-coupling factor [Yersinia mollaretii ATCC
           43969]
          Length = 1148

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 151/409 (36%), Positives = 222/409 (54%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G    ++ +  Q   ++ PF  T  QE AI  +L DM Q   M R++ 
Sbjct: 568 LLDIYAQRAAKSGFKFKLDREQYQLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++  +       + +E+++   
Sbjct: 628 GDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               ++  LE+ A G+  IIIGTH L Q  +++  L L+IVDE+HRFGV+ + ++     
Sbjct: 688 SAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWQDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVIR-EAIL 803

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N     +R   L     + IAI HG+M + D E VM+ 
Sbjct: 804 REILRGGQVYYLYNDVE-----NIEKATQRLAELVPE--ARIAIGHGQMRERDLERVMND 856

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 916

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 917 PNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965


>gi|126174619|ref|YP_001050768.1| transcription-repair coupling factor [Shewanella baltica OS155]
 gi|125997824|gb|ABN61899.1| transcription-repair coupling factor [Shewanella baltica OS155]
          Length = 1162

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 157/428 (36%), Positives = 233/428 (54%), Gaps = 25/428 (5%)

Query: 267  RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            R  PF  T  QESAI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V+
Sbjct: 606  RGFPFEETVDQESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVV 665

Query: 327  MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            + P  +LAQQHYE  K    +  ++ E+++       + + L+++  G+  I+IGTH L 
Sbjct: 666  LVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLQQLEEGKVDIVIGTHKLL 725

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            Q   ++  L L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S
Sbjct: 726  QSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLS 785

Query: 447  KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSV 503
             I   PA R  +KT +    R  +     + +L E   G + Y++   + E  E   + +
Sbjct: 786  IIATPPAKRLAVKTFV----RESDPATVREAILREILRGGQVYYLHNNV-ESIEKCAQGI 840

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            ++          + + + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ I
Sbjct: 841  IDLLPE------ARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTI 894

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GF 618
            IIE A+ FGLAQLHQLRGRVGR    +   L+  HP  ++ ++  RL  +   ED   GF
Sbjct: 895  IIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGF 954

Query: 619  LIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            ++A +DL+ R  GE+LG +QSG + K   +   L+  +LE A K  K    ++P L  + 
Sbjct: 955  MLATQDLEIRGAGELLGDEQSGHISKIGFS---LYMEMLEAAVKALKQ--GKEPSLAQML 1009

Query: 678  GQSIRILL 685
             Q   I L
Sbjct: 1010 NQQCEIEL 1017


>gi|238789093|ref|ZP_04632882.1| Transcription-repair-coupling factor [Yersinia frederiksenii ATCC
           33641]
 gi|238722857|gb|EEQ14508.1| Transcription-repair-coupling factor [Yersinia frederiksenii ATCC
           33641]
          Length = 1099

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 148/397 (37%), Positives = 217/397 (54%), Gaps = 19/397 (4%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G    ++ +  Q   ++ PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+
Sbjct: 580 GFKFKLDREQYQLFCQSFPFETTPDQEQAINAVLNDMCQPLAMDRLVCGDVGFGKTEVAM 639

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV    Q  ++ P  +LAQQH++  +       + +E+++       ++  LE+ 
Sbjct: 640 RAAFLAVANNKQVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFRSAKEQQVILEQA 699

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A G+  IIIGTH L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPI
Sbjct: 700 AEGKVDIIIGTHKLLQSDLRWQDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPI 759

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWI 488
           PRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++
Sbjct: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYL 815

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +E     N     +R   L     + IAI HG+M + D E VM+ F +    +L+ T
Sbjct: 816 YNDVE-----NIEKATQRLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYT 606
           T+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL   P  ++ ++  
Sbjct: 869 TIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMTTDAKK 928

Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 929 RLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965


>gi|301029579|ref|ZP_07192657.1| transcription-repair coupling factor [Escherichia coli MS 196-1]
 gi|299877574|gb|EFI85785.1| transcription-repair coupling factor [Escherichia coli MS 196-1]
          Length = 1148

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 152/409 (37%), Positives = 223/409 (54%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q    + PF  T  Q  AI  +L DM Q   M R++ 
Sbjct: 568 LLDIYAQRAAKEGFAFKYDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+  +    N  + +E+I+   
Sbjct: 628 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + + L  +A G+  I+IGTH L Q  +++  L L+IVDE+HRFGV+ + ++     
Sbjct: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSMVVR-EAIL 803

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N +   ER   L     + IAI HG+M + + E VM+ 
Sbjct: 804 REILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIAIGHGQMRERELERVMND 856

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916

Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            HP  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG
Sbjct: 917 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965


>gi|160875623|ref|YP_001554939.1| transcription-repair coupling factor [Shewanella baltica OS195]
 gi|160861145|gb|ABX49679.1| transcription-repair coupling factor [Shewanella baltica OS195]
 gi|315267811|gb|ADT94664.1| transcription-repair coupling factor [Shewanella baltica OS678]
          Length = 1165

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 157/428 (36%), Positives = 233/428 (54%), Gaps = 25/428 (5%)

Query: 267  RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            R  PF  T  QESAI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V+
Sbjct: 606  RGFPFEETVDQESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVV 665

Query: 327  MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            + P  +LAQQHYE  K    +  ++ E+++       + + L+++  G+  I+IGTH L 
Sbjct: 666  LVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLQQLEEGKVDIVIGTHKLL 725

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            Q   ++  L L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S
Sbjct: 726  QSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLS 785

Query: 447  KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSV 503
             I   PA R  +KT +    R  +     + +L E   G + Y++   + E  E   + +
Sbjct: 786  IIATPPAKRLAVKTFV----RESDPATVREAILREILRGGQVYYLHNNV-ESIEKCAQGI 840

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            ++          + + + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ I
Sbjct: 841  IDLLPE------ARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTI 894

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GF 618
            IIE A+ FGLAQLHQLRGRVGR    +   L+  HP  ++ ++  RL  +   ED   GF
Sbjct: 895  IIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGF 954

Query: 619  LIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            ++A +DL+ R  GE+LG +QSG + K   +   L+  +LE A K  K    ++P L  + 
Sbjct: 955  MLATQDLEIRGAGELLGDEQSGHISKIGFS---LYMEMLEAAVKALKQ--GKEPSLAQML 1009

Query: 678  GQSIRILL 685
             Q   I L
Sbjct: 1010 NQQCEIEL 1017


>gi|261210529|ref|ZP_05924822.1| transcription-repair coupling factor [Vibrio sp. RC341]
 gi|260840314|gb|EEX66885.1| transcription-repair coupling factor [Vibrio sp. RC341]
          Length = 1155

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 148/383 (38%), Positives = 213/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  L+ +A G+  I++GTH L  
Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKLILQDVADGKVDILVGTHKLLS 720

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 837 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   G
Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970


>gi|90962332|ref|YP_536248.1| transcription-repair coupling factor [Lactobacillus salivarius
           UCC118]
 gi|90821526|gb|ABE00165.1| Transcription-repair coupling factor [Lactobacillus salivarius
           UCC118]
          Length = 1174

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 144/429 (33%), Positives = 238/429 (55%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R      E +A ++  L  +++ +K  G     +    ++     P++ T  Q 
Sbjct: 568 EWAKTKRRVANKIEDIADELVDLYAKREAEK--GYAFTPDDSYQKEFEDAFPYTETPDQL 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + K+I QDM +   M R+L GDVG GKT VAL A   AV+ G Q   +AP  +LAQQHY
Sbjct: 626 RSAKEIKQDMEKTKPMDRLLIGDVGYGKTEVALRAAFKAVQDGKQVAFLAPTTVLAQQHY 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +++  +N  + + I++        ++ +E +  G+  I++GTH L    +++  L L+
Sbjct: 686 ETMEQRFENFPVEIGILSRFNTAKEIKETIENLETGKLDIVVGTHRLLSKDVKFADLGLL 745

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L +  T+  VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746 IIDEEQRFGVKHKERLKELKTSVDVLTLTATPIPRTLNMSMLGVRDLSVIETAPMNRYPI 805

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
           +T +I  N    +++ +K  +  G + +++  +++  EK  S   S+V           +
Sbjct: 806 QTYVIEKN-YGVIVDGIKREIERGGQVFYLHNRVDDIEKVASELESLVPE---------A 855

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A IHGRM++   E+++  F +G   +L+ TT+IE G+D+ + + + ++NA+  GL+QL
Sbjct: 856 KVAYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRMGLSQL 915

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGRVGR   I+    +Y P   L++ +  RL  +K+ TE   GF IA  DL  R  G
Sbjct: 916 YQLRGRVGRSNRIAYAYFMYQPNKVLTEVAEKRLEAIKDFTELGSGFKIAMRDLSIRGAG 975

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 976 NLLGKQQHG 984


>gi|300922643|ref|ZP_07138740.1| transcription-repair coupling factor [Escherichia coli MS 182-1]
 gi|300420992|gb|EFK04303.1| transcription-repair coupling factor [Escherichia coli MS 182-1]
          Length = 1164

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 216/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRG-EEISSCILLYHP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR   +  + +L  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTTHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|315287490|gb|EFU46901.1| transcription-repair coupling factor [Escherichia coli MS 110-3]
          Length = 1164

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|219850580|ref|YP_002465013.1| transcription-repair coupling factor [Chloroflexus aggregans DSM
           9485]
 gi|219544839|gb|ACL26577.1| transcription-repair coupling factor [Chloroflexus aggregans DSM
           9485]
          Length = 1182

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 154/429 (35%), Positives = 238/429 (55%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R+  A  + LA ++  L  ++Q K   G   + + +  +++  + P+  T  Q 
Sbjct: 562 DWERTKRKVRAAVQELAEELLHLYAQRQLKP--GFAFSPDNEWQRELEASFPYLETDDQL 619

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI ++  DM +   M R++ GDVG GKT VAL A   AV+ G Q  I+ P  +LAQQH+
Sbjct: 620 RAIAEVKADMERPIPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAILVPTTVLAQQHF 679

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +  +K      + VE+++       +   +  +A G+  IIIGTH L  + + +  L LV
Sbjct: 680 DTFRKRMAAFPVTVEMLSRFRSPKEQDGIVRDLARGKIDIIIGTHRLLSNDVVFRDLGLV 739

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L Q      VL +TATPIPRTL +   G  D+S I   P  R PI
Sbjct: 740 IVDEEQRFGVRHKERLKQLRAEVDVLTLTATPIPRTLHMALSGIRDLSVINTPPEDRLPI 799

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           KT ++P +   I EVI R    L    + Y++  +++     +   V ER   L     +
Sbjct: 800 KTYVVPADDHLIQEVIRR---ELEREGQVYFVHNRVQ-----SIYHVAERLRRLVPE--A 849

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA+ HG++++ + E VM  F  G   +L+ TT+IE G+DV +A+ III++A H+GLAQL
Sbjct: 850 RIAVGHGQLAERNLERVMMDFFEGRYDVLVCTTIIESGLDVPNANTIIIDDATHYGLAQL 909

Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QLRGRVGRG   +   LLY+P  P++ ++  RL  ++   +   GF +A  DL+ R  G
Sbjct: 910 YQLRGRVGRGATRAYAYLLYNPAAPMTSDARQRLEAIQEATELGAGFRVAMRDLEIRGAG 969

Query: 632 EILGIKQSG 640
            +LG +QSG
Sbjct: 970 NLLGSEQSG 978


>gi|91210269|ref|YP_540255.1| transcription-repair coupling factor [Escherichia coli UTI89]
 gi|237706900|ref|ZP_04537381.1| transcription-repair coupling factor [Escherichia sp. 3_2_53FAA]
 gi|91071843|gb|ABE06724.1| transcription-repair coupling factor; mutation frequency decline
           [Escherichia coli UTI89]
 gi|226898110|gb|EEH84369.1| transcription-repair coupling factor [Escherichia sp. 3_2_53FAA]
          Length = 1169

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 612 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 671

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 672 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 731

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 732 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 791

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 792 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 842

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 843 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 900

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 901 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 960

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 961 GAGFALATHDLEIRGAGELLGEEQSG 986


>gi|90109237|pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
           Coupling Factor
 gi|90109238|pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
           Coupling Factor
          Length = 1151

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 594 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 653

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 654 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 713

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 714 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 773

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 774 RDLSIIATPPARRLAVKTF---VREYDSMVVR-EAILREILRGGQVYYLYNDVE-----N 824

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 825 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 882

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 883 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 942

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 943 GAGFALATHDLEIRGAGELLGEEQSG 968


>gi|315618286|gb|EFU98876.1| transcription-repair coupling factor [Escherichia coli 3431]
          Length = 1148

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSMVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|332279698|ref|ZP_08392111.1| transcription-repair coupling factor [Shigella sp. D9]
 gi|332102050|gb|EGJ05396.1| transcription-repair coupling factor [Shigella sp. D9]
          Length = 1169

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 612 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 671

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 672 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 731

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 732 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 791

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 792 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 842

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 843 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 900

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 901 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 960

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 961 GAGFALATHDLEIRGAGELLGEEQSG 986


>gi|328950754|ref|YP_004368089.1| transcription-repair coupling factor [Marinithermus hydrothermalis
           DSM 14884]
 gi|328451078|gb|AEB11979.1| transcription-repair coupling factor [Marinithermus hydrothermalis
           DSM 14884]
          Length = 985

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 137/382 (35%), Positives = 217/382 (56%), Gaps = 17/382 (4%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           I +N P++ T  Q+ A+++ L+D+     M R++ GDVG GKT VAL A    V  G Q 
Sbjct: 444 IEKNFPYTLTPDQKRALEETLKDLETPRPMDRLISGDVGFGKTEVALRAAHRVVGHGKQV 503

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
             + P  +LAQQHYE      ++  + + +++        R+ LE +  G   I+IGTH 
Sbjct: 504 AFLVPTTLLAQQHYETFCARFRDLPVSIGMLSRFTSAREERRVLEGLKRGAVDIVIGTHR 563

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L    + +  L L+I+DE+HRFGV Q+ +L +      VL ++ATPIPRTL    +G  D
Sbjct: 564 LLSADVAFRDLGLLIIDEEHRFGVAQKERLKELREGVDVLTLSATPIPRTLYQALVGLKD 623

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRS 502
           +S I   P GRKPI+T++ P    D  + R  V+  +  G KA+++  ++         S
Sbjct: 624 VSSIQTPPPGRKPIRTILAP---FDPALVREAVMFEIERGGKAFYVHDRVA--------S 672

Query: 503 VVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           + +R   L      + I ++HG+M + + E VM  F+ G   LL+ATT++E G+D+ +A+
Sbjct: 673 IAQRAKYLEALIPEARIGVVHGQMPEDEIEEVMFLFQEGAFDLLVATTIVESGLDIPEAN 732

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
            I+IE A+  GLA L+QLRGRVGR E+ +   L + P L++ +  RL+ + +  D   G 
Sbjct: 733 TILIERADKLGLANLYQLRGRVGRREKEAYAYLFHPPKLTEAAERRLAAIADLSDLGSGH 792

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
           L+AE+D++ R  G +LG +Q G
Sbjct: 793 LLAEKDMEIRGVGNLLGPEQHG 814


>gi|117920732|ref|YP_869924.1| transcription-repair coupling factor [Shewanella sp. ANA-3]
 gi|117613064|gb|ABK48518.1| transcription-repair coupling factor [Shewanella sp. ANA-3]
          Length = 1160

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 153/417 (36%), Positives = 230/417 (55%), Gaps = 25/417 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A ++  +  R+Q +      IN E + AQ   +  PF  T  QESAI  +L DM     
Sbjct: 574 VAAELLDVYARRQARPGESCDINDE-EYAQ-FAQGFPFEETVDQESAIHAVLADMQSPVA 631

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQHYE  K    +  +++E
Sbjct: 632 MDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPVVIE 691

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +++       + + L+ +  G+  I+IGTH L Q   ++  L L+I+DE+HRFGV+Q+ K
Sbjct: 692 VMSRFRTAKEQTQVLKLLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEK 751

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           +        +L +TATPIPRTL +   G  D+S I   PA R  +KT +    R  +   
Sbjct: 752 IKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV----RESDPAT 807

Query: 474 RLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
             + +L E   G + Y++   +E  EK   +  +++           + + + HG+M + 
Sbjct: 808 VREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPE---------ARVVVAHGQMRER 858

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D E VM  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGLAQLHQLRGRVGR   
Sbjct: 859 DLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQLRGRVGRSHH 918

Query: 589 ISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            +   L+  HP  ++ ++  RL  +   ED   GF++A +DL+ R  GE+LG +QSG
Sbjct: 919 QAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSG 975


>gi|281600530|gb|ADA73514.1| Transcription-repair coupling factor [Shigella flexneri 2002017]
          Length = 1169

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 612 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 671

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 672 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 731

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 732 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 791

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 792 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 842

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 843 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 900

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 901 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 960

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 961 GAGFALATHDLEIRGAGELLGEEQSG 986


>gi|306832490|ref|ZP_07465642.1| transcription-repair coupling factor [Streptococcus gallolyticus
            subsp. gallolyticus TX20005]
 gi|304425390|gb|EFM28510.1| transcription-repair coupling factor [Streptococcus gallolyticus
            subsp. gallolyticus TX20005]
          Length = 1170

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 165/469 (35%), Positives = 254/469 (54%), Gaps = 33/469 (7%)

Query: 207  NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
            N +++ R  K  +  S   E +A D+LL     L   R Q K   G   + +  + ++  
Sbjct: 559  NKLNDGRFQKTKQKVSKQVEDIA-DDLLK----LYAERSQLK---GFAFSPDDDLQREFD 610

Query: 267  RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             +  F  T+ Q  +IK+I  DM +   M R+L GDVG GKT VA+ A   AV+   Q  +
Sbjct: 611  EDFAFVETEDQLRSIKEIKHDMEEDKPMDRLLVGDVGFGKTEVAMRAAFKAVKDHKQVAV 670

Query: 327  MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            + P  +LAQQHY    +  +N  + V++++    +  +   L+++  GQ  IIIGTH L 
Sbjct: 671  LVPTTVLAQQHYTNFSERFENYPVTVDVLSRFRSKKEQNDTLDKLKKGQVDIIIGTHRLL 730

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
               + +  L L+I+DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S
Sbjct: 731  SKDVDFADLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLS 790

Query: 447  KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRS 502
             I   P  R P++T ++  N   I E I R    +  G + +++  +++  ++K S  + 
Sbjct: 791  VIETPPTNRYPVQTYVLETNPGLIREAIIR---EIDRGGQVFYVYNRVDTIDQKVSELQE 847

Query: 503  VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +V           +SI  +HG+MS+I  E+ +  F +G   +L+ATT+IE G+D+ + + 
Sbjct: 848  LVPE---------ASIGFVHGQMSEIQLENTLMDFIDGVYDVLVATTIIETGVDISNVNT 898

Query: 563  IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DG 617
            + IENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   G
Sbjct: 899  LFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLDAIKGFTELGSG 958

Query: 618  FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAK 664
            F IA  DL  R  G ILG  QSG    +    E++  LLE  IA+K  K
Sbjct: 959  FKIAMRDLSIRGAGNILGASQSGFIDSV--GFEMYSQLLEEAIAKKQGK 1005


>gi|300917885|ref|ZP_07134518.1| transcription-repair coupling factor [Escherichia coli MS 115-1]
 gi|300414875|gb|EFJ98185.1| transcription-repair coupling factor [Escherichia coli MS 115-1]
          Length = 1164

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|331682620|ref|ZP_08383239.1| transcription-repair coupling factor [Escherichia coli H299]
 gi|331080251|gb|EGI51430.1| transcription-repair coupling factor [Escherichia coli H299]
          Length = 1148

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|315135746|dbj|BAJ42905.1| transcription-repair coupling factor [Escherichia coli DH1]
          Length = 1169

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 612 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 671

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 672 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 731

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 732 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 791

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 792 RDLSIIATPPARRLAVKTF---VREYDSMVVR-EAILREILRGGQVYYLYNDVE-----N 842

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 843 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 900

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 901 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 960

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 961 GAGFALATHDLEIRGAGELLGEEQSG 986


>gi|119472828|ref|ZP_01614752.1| transcription-repair ATP-dependent coupling factor [Alteromonadales
           bacterium TW-7]
 gi|119444723|gb|EAW26029.1| transcription-repair ATP-dependent coupling factor [Alteromonadales
           bacterium TW-7]
          Length = 1157

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 152/410 (37%), Positives = 223/410 (54%), Gaps = 21/410 (5%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G    ++G+  ++   + PF  T  Q +AI+ +L DM  K  M R++ 
Sbjct: 577 LLDIYAQRQAKPGNKFTLDGQAYRQFSESFPFEETDDQRNAIEAVLGDMQSKQAMDRLVC 636

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHYE  K    +  I V +++   
Sbjct: 637 GDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTLLAQQHYENFKDRFADFPIEVGVLSRFN 696

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               ++  LE +A+G+  I+IGTH L Q  I++  L L+IVDE+HRFGV+Q+ K+     
Sbjct: 697 STKEQKDTLENMANGKLDIVIGTHKLIQQDIKFNDLGLLIVDEEHRFGVRQKEKIKALRA 756

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI--IPINRIDEVIERLKV 477
              +L +TATPIPRTL +   G  D+S I   PA R  +KT +    +  I E I R   
Sbjct: 757 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRQRDVELIREAILR--- 813

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII--HGRMSDIDKESVMD 535
            +  G + Y++   +E          +ER       +     +I  HG+M + + E +M 
Sbjct: 814 EIKRGGQVYFLHNNVE---------TIERVAQELSEWVPEANVITAHGQMREQELEQIMT 864

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +    +++ TT+IE GIDV  A+ II++ A+  GLAQLHQLRGRVGR    +   LL
Sbjct: 865 QFYHQKYNVIVCTTIIETGIDVPTANTIIMDRADKLGLAQLHQLRGRVGRSHHQAYAYLL 924

Query: 596 YHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
              P  LSK++  RL  +++ ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 925 TGDPKALSKDASKRLQAIESLEDLGAGFALATHDLEIRGAGELLGDDQSG 974


>gi|331652166|ref|ZP_08353185.1| transcription-repair coupling factor [Escherichia coli M718]
 gi|331050444|gb|EGI22502.1| transcription-repair coupling factor [Escherichia coli M718]
          Length = 1164

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|227886529|ref|ZP_04004334.1| transcription-repair coupling factor TRCF [Escherichia coli 83972]
 gi|301051097|ref|ZP_07197931.1| transcription-repair coupling factor [Escherichia coli MS 185-1]
 gi|227836733|gb|EEJ47199.1| transcription-repair coupling factor TRCF [Escherichia coli 83972]
 gi|300297269|gb|EFJ53654.1| transcription-repair coupling factor [Escherichia coli MS 185-1]
 gi|307553115|gb|ADN45890.1| transcription-repair coupling factor [Escherichia coli ABU 83972]
 gi|315291014|gb|EFU50379.1| transcription-repair coupling factor [Escherichia coli MS 153-1]
          Length = 1164

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|300928331|ref|ZP_07143866.1| transcription-repair coupling factor [Escherichia coli MS 187-1]
 gi|300463663|gb|EFK27156.1| transcription-repair coupling factor [Escherichia coli MS 187-1]
          Length = 1164

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|331646372|ref|ZP_08347475.1| transcription-repair coupling factor [Escherichia coli M605]
 gi|331045124|gb|EGI17251.1| transcription-repair coupling factor [Escherichia coli M605]
          Length = 1164

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|300974586|ref|ZP_07172647.1| transcription-repair coupling factor [Escherichia coli MS 45-1]
 gi|300410528|gb|EFJ94066.1| transcription-repair coupling factor [Escherichia coli MS 45-1]
          Length = 1164

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|281178224|dbj|BAI54554.1| transcription-repair coupling factor [Escherichia coli SE15]
          Length = 1148

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFMAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|110641290|ref|YP_669020.1| transcription-repair coupling factor [Escherichia coli 536]
 gi|300982404|ref|ZP_07176102.1| transcription-repair coupling factor [Escherichia coli MS 200-1]
 gi|110342882|gb|ABG69119.1| transcription-repair coupling factor [Escherichia coli 536]
 gi|300307241|gb|EFJ61761.1| transcription-repair coupling factor [Escherichia coli MS 200-1]
 gi|324013204|gb|EGB82423.1| transcription-repair coupling factor [Escherichia coli MS 60-1]
          Length = 1164

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|191173073|ref|ZP_03034606.1| transcription-repair coupling factor [Escherichia coli F11]
 gi|190906618|gb|EDV66224.1| transcription-repair coupling factor [Escherichia coli F11]
          Length = 1148

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|333004926|gb|EGK24446.1| transcription-repair coupling factor [Shigella flexneri VA-6]
          Length = 1148

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLNDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|320197559|gb|EFW72172.1| Transcription-repair coupling factor [Escherichia coli WV_060327]
          Length = 1148

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|315296619|gb|EFU55914.1| transcription-repair coupling factor [Escherichia coli MS 16-3]
          Length = 1164

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|306814036|ref|ZP_07448209.1| transcription-repair coupling factor [Escherichia coli NC101]
 gi|305852673|gb|EFM53121.1| transcription-repair coupling factor [Escherichia coli NC101]
          Length = 1148

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|218700384|ref|YP_002408013.1| transcription-repair coupling factor [Escherichia coli IAI39]
 gi|293409480|ref|ZP_06653056.1| transcription-repair coupling factor [Escherichia coli B354]
 gi|218370370|emb|CAR18173.1| transcription-repair coupling factor [Escherichia coli IAI39]
 gi|291469948|gb|EFF12432.1| transcription-repair coupling factor [Escherichia coli B354]
          Length = 1148

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|304408993|ref|ZP_07390614.1| transcription-repair coupling factor [Shewanella baltica OS183]
 gi|307302996|ref|ZP_07582751.1| transcription-repair coupling factor [Shewanella baltica BA175]
 gi|304352814|gb|EFM17211.1| transcription-repair coupling factor [Shewanella baltica OS183]
 gi|306913356|gb|EFN43778.1| transcription-repair coupling factor [Shewanella baltica BA175]
          Length = 1165

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 157/428 (36%), Positives = 233/428 (54%), Gaps = 25/428 (5%)

Query: 267  RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            R  PF  T  QESAI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V+
Sbjct: 606  RGFPFEETVDQESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVV 665

Query: 327  MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            + P  +LAQQHYE  K    +  ++ E+++       + + L+++  G+  I+IGTH L 
Sbjct: 666  LVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLQQLEEGKVDIVIGTHKLL 725

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            Q   ++  L L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S
Sbjct: 726  QSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLS 785

Query: 447  KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSV 503
             I   PA R  +KT +    R  +     + +L E   G + Y++   + E  E   + +
Sbjct: 786  IIATPPAKRLAVKTFV----RESDPATVREAILREILRGGQVYYLHNNV-ESIEKCAQGI 840

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            ++          + + + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ I
Sbjct: 841  IDLLPE------ARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTI 894

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GF 618
            IIE A+ FGLAQLHQLRGRVGR    +   L+  HP  ++ ++  RL  +   ED   GF
Sbjct: 895  IIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGF 954

Query: 619  LIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            ++A +DL+ R  GE+LG +QSG + K   +   L+  +LE A K  K    ++P L  + 
Sbjct: 955  MLATQDLEIRGAGELLGDEQSGHISKIGFS---LYMEMLEAAVKALKQ--GKEPSLAQML 1009

Query: 678  GQSIRILL 685
             Q   I L
Sbjct: 1010 NQQCEIEL 1017


>gi|253773863|ref|YP_003036694.1| transcription-repair coupling factor [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253324907|gb|ACT29509.1| transcription-repair coupling factor [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
          Length = 1164

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|254161220|ref|YP_003044328.1| transcription-repair coupling factor [Escherichia coli B str.
           REL606]
 gi|242376916|emb|CAQ31635.1| transcription-repair coupling factor [Escherichia coli BL21(DE3)]
 gi|253973121|gb|ACT38792.1| transcription-repair coupling factor [Escherichia coli B str.
           REL606]
 gi|253977335|gb|ACT43005.1| transcription-repair coupling factor [Escherichia coli BL21(DE3)]
          Length = 1148

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|300816816|ref|ZP_07097036.1| transcription-repair coupling factor [Escherichia coli MS 107-1]
 gi|300902508|ref|ZP_07120488.1| transcription-repair coupling factor [Escherichia coli MS 84-1]
 gi|301305647|ref|ZP_07211736.1| transcription-repair coupling factor [Escherichia coli MS 124-1]
 gi|309796542|ref|ZP_07690949.1| transcription-repair coupling factor [Escherichia coli MS 145-7]
 gi|300405409|gb|EFJ88947.1| transcription-repair coupling factor [Escherichia coli MS 84-1]
 gi|300530590|gb|EFK51652.1| transcription-repair coupling factor [Escherichia coli MS 107-1]
 gi|300839075|gb|EFK66835.1| transcription-repair coupling factor [Escherichia coli MS 124-1]
 gi|308119854|gb|EFO57116.1| transcription-repair coupling factor [Escherichia coli MS 145-7]
 gi|315253014|gb|EFU32982.1| transcription-repair coupling factor [Escherichia coli MS 85-1]
          Length = 1164

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|218557995|ref|YP_002390908.1| transcription-repair coupling factor [Escherichia coli S88]
 gi|218364764|emb|CAR02454.1| transcription-repair coupling factor [Escherichia coli S88]
 gi|294491241|gb|ADE89997.1| transcription-repair coupling factor [Escherichia coli IHE3034]
 gi|307627415|gb|ADN71719.1| transcription-repair coupling factor [Escherichia coli UM146]
 gi|323957940|gb|EGB53652.1| transcription-repair coupling protein [Escherichia coli H263]
          Length = 1148

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|293414407|ref|ZP_06657056.1| transcription-repair coupling factor [Escherichia coli B185]
 gi|291434465|gb|EFF07438.1| transcription-repair coupling factor [Escherichia coli B185]
          Length = 1148

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|300938685|ref|ZP_07153409.1| transcription-repair coupling factor [Escherichia coli MS 21-1]
 gi|300456330|gb|EFK19823.1| transcription-repair coupling factor [Escherichia coli MS 21-1]
          Length = 1164

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|70729336|ref|YP_259073.1| transcription-repair coupling factor [Pseudomonas fluorescens Pf-5]
 gi|68343635|gb|AAY91241.1| transcription-repair coupling factor [Pseudomonas fluorescens Pf-5]
          Length = 1149

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 147/380 (38%), Positives = 212/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q+S I+ + +DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 598 GFPFEETPDQQSTIEAVREDMLSGKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAIL 657

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 658 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQ 717

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 718 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 777

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   V E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 778 IATPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 836

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 837 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 887

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 888 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVL 947

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 948 ATNDLEIRGAGELLGDGQSG 967


>gi|288904230|ref|YP_003429451.1| transcription repair coupling factor [Streptococcus gallolyticus
            UCN34]
 gi|325977207|ref|YP_004286923.1| transcription-repair coupling factor [Streptococcus gallolyticus
            subsp. gallolyticus ATCC BAA-2069]
 gi|288730955|emb|CBI12499.1| Transcription repair coupling factor [Streptococcus gallolyticus
            UCN34]
 gi|325177135|emb|CBZ47179.1| transcription-repair coupling factor [Streptococcus gallolyticus
            subsp. gallolyticus ATCC BAA-2069]
          Length = 1166

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 165/469 (35%), Positives = 254/469 (54%), Gaps = 33/469 (7%)

Query: 207  NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
            N +++ R  K  +  S   E +A D+LL     L   R Q K   G   + +  + ++  
Sbjct: 555  NKLNDGRFQKTKQKVSKQVEDIA-DDLLK----LYAERSQLK---GFAFSPDDDLQREFD 606

Query: 267  RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             +  F  T+ Q  +IK+I  DM +   M R+L GDVG GKT VA+ A   AV+   Q  +
Sbjct: 607  EDFAFVETEDQLRSIKEIKHDMEEDKPMDRLLVGDVGFGKTEVAMRAAFKAVKDHKQVAV 666

Query: 327  MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            + P  +LAQQHY    +  +N  + V++++    +  +   L+++  GQ  IIIGTH L 
Sbjct: 667  LVPTTVLAQQHYTNFSERFENYPVTVDVLSRFRSKKEQNDTLDKLKKGQVDIIIGTHRLL 726

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
               + +  L L+I+DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S
Sbjct: 727  SKDVDFADLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLS 786

Query: 447  KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRS 502
             I   P  R P++T ++  N   I E I R    +  G + +++  +++  ++K S  + 
Sbjct: 787  VIETPPTNRYPVQTYVLETNPGLIREAIIR---EIDRGGQVFYVYNRVDTIDQKVSELQE 843

Query: 503  VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +V           +SI  +HG+MS+I  E+ +  F +G   +L+ATT+IE G+D+ + + 
Sbjct: 844  LVPE---------ASIGFVHGQMSEIQLENTLMDFIDGVYDVLVATTIIETGVDISNVNT 894

Query: 563  IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DG 617
            + IENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   G
Sbjct: 895  LFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLDAIKGFTELGSG 954

Query: 618  FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAK 664
            F IA  DL  R  G ILG  QSG    +    E++  LLE  IA+K  K
Sbjct: 955  FKIAMRDLSIRGAGNILGASQSGFIDSV--GFEMYSQLLEEAIAKKQGK 1001


>gi|256018630|ref|ZP_05432495.1| transcription-repair coupling factor [Shigella sp. D9]
          Length = 1148

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|331672629|ref|ZP_08373418.1| transcription-repair coupling factor [Escherichia coli TA280]
 gi|331070272|gb|EGI41638.1| transcription-repair coupling factor [Escherichia coli TA280]
          Length = 1164

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|323953199|gb|EGB49065.1| transcription-repair coupling protein [Escherichia coli H252]
          Length = 1148

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 147/381 (38%), Positives = 214/381 (56%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++
Sbjct: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGTH L Q
Sbjct: 656 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 715

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S 
Sbjct: 716 SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 775

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVV 504
           I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N +   
Sbjct: 776 IATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----NIQKAA 826

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ II
Sbjct: 827 ERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFL 619
           IE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED   GF 
Sbjct: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG +QSG
Sbjct: 945 LATHDLEIRGAGELLGEEQSG 965


>gi|218689066|ref|YP_002397278.1| transcription-repair coupling factor [Escherichia coli ED1a]
 gi|218426630|emb|CAR07458.1| transcription-repair coupling factor [Escherichia coli ED1a]
          Length = 1148

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|215486325|ref|YP_002328756.1| transcription-repair coupling factor [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312968807|ref|ZP_07783014.1| transcription-repair coupling factor [Escherichia coli 2362-75]
 gi|215264397|emb|CAS08754.1| transcription-repair coupling factor [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312286209|gb|EFR14122.1| transcription-repair coupling factor [Escherichia coli 2362-75]
 gi|323190466|gb|EFZ75740.1| transcription-repair coupling factor [Escherichia coli RN587/1]
          Length = 1148

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|331662525|ref|ZP_08363448.1| transcription-repair coupling factor [Escherichia coli TA143]
 gi|331060947|gb|EGI32911.1| transcription-repair coupling factor [Escherichia coli TA143]
          Length = 1148

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|284920939|emb|CBG34002.1| transcription-repair coupling factor [Escherichia coli 042]
          Length = 1164

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|24373808|ref|NP_717851.1| transcription-repair coupling factor [Shewanella oneidensis MR-1]
 gi|24348203|gb|AAN55295.1|AE015667_5 transcription-repair coupling factor [Shewanella oneidensis MR-1]
          Length = 1164

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 152/417 (36%), Positives = 230/417 (55%), Gaps = 25/417 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A ++  +  R+Q +      IN E + AQ   +  PF  T  QESAI  +L DM     
Sbjct: 574 VAAELLDVYARRQARPGESCEINDE-EYAQ-FAQGFPFEETVDQESAIHAVLADMQSPTA 631

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   AV  G Q V++ P  +LAQQHYE  K    +  +++E
Sbjct: 632 MDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVVVLVPTTLLAQQHYENFKDRFADWPVVIE 691

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +++       + + L+++  G+  I+IGTH L Q   ++  L L+I+DE+HRFGV+Q+ K
Sbjct: 692 VMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEK 751

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           +        +L +TATPIPRTL +   G  D+S I   PA R  +KT +    R  +   
Sbjct: 752 IKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV----RESDPAT 807

Query: 474 RLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
             + +L E   G + Y++   +E  EK   +  +++           + + + HG+M + 
Sbjct: 808 VREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPE---------ARVVVAHGQMRER 858

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D E VM  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGLAQLHQLRGRVGR   
Sbjct: 859 DLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQLRGRVGRSHH 918

Query: 589 ISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            +   L+  HP  ++ ++  RL  +   ED   GF++A +DL+ R  GE+LG +QSG
Sbjct: 919 QAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSG 975


>gi|157160641|ref|YP_001457959.1| transcription-repair coupling factor [Escherichia coli HS]
 gi|312971250|ref|ZP_07785428.1| transcription-repair coupling factor [Escherichia coli 1827-70]
 gi|157066321|gb|ABV05576.1| transcription-repair coupling factor [Escherichia coli HS]
 gi|310336452|gb|EFQ01638.1| transcription-repair coupling factor [Escherichia coli 1827-70]
          Length = 1148

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|332089282|gb|EGI94388.1| transcription-repair coupling factor [Shigella boydii 5216-82]
          Length = 1148

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|117623299|ref|YP_852212.1| transcription-repair coupling factor [Escherichia coli APEC O1]
 gi|115512423|gb|ABJ00498.1| transcription-repair coupling factor; mutation frequency decline
           [Escherichia coli APEC O1]
          Length = 1164

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 147/381 (38%), Positives = 214/381 (56%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++
Sbjct: 612 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 671

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGTH L Q
Sbjct: 672 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 731

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S 
Sbjct: 732 SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 791

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVV 504
           I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N +   
Sbjct: 792 IATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----NIQKAA 842

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ II
Sbjct: 843 ERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 900

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFL 619
           IE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED   GF 
Sbjct: 901 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 960

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG +QSG
Sbjct: 961 LATHDLEIRGAGELLGEEQSG 981


>gi|301328512|ref|ZP_07221578.1| transcription-repair coupling factor [Escherichia coli MS 78-1]
 gi|307310109|ref|ZP_07589759.1| transcription-repair coupling factor [Escherichia coli W]
 gi|300845119|gb|EFK72879.1| transcription-repair coupling factor [Escherichia coli MS 78-1]
 gi|306909827|gb|EFN40321.1| transcription-repair coupling factor [Escherichia coli W]
 gi|315060391|gb|ADT74718.1| transcription-repair coupling factor [Escherichia coli W]
 gi|323379049|gb|ADX51317.1| transcription-repair coupling factor [Escherichia coli KO11]
 gi|324017516|gb|EGB86735.1| transcription-repair coupling factor [Escherichia coli MS 117-3]
          Length = 1164

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|323962713|gb|EGB58291.1| transcription-repair coupling protein [Escherichia coli H489]
 gi|323973296|gb|EGB68485.1| transcription-repair coupling protein [Escherichia coli TA007]
 gi|332342663|gb|AEE55997.1| transcription-repair coupling factor protein [Escherichia coli
           UMNK88]
          Length = 1148

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|320179184|gb|EFW54142.1| Transcription-repair coupling factor [Shigella boydii ATCC 9905]
          Length = 1148

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|300948704|ref|ZP_07162781.1| transcription-repair coupling factor [Escherichia coli MS 116-1]
 gi|300956220|ref|ZP_07168532.1| transcription-repair coupling factor [Escherichia coli MS 175-1]
 gi|301644530|ref|ZP_07244523.1| transcription-repair coupling factor [Escherichia coli MS 146-1]
 gi|331641657|ref|ZP_08342792.1| transcription-repair coupling factor [Escherichia coli H736]
 gi|260449747|gb|ACX40169.1| transcription-repair coupling factor [Escherichia coli DH1]
 gi|300316948|gb|EFJ66732.1| transcription-repair coupling factor [Escherichia coli MS 175-1]
 gi|300451798|gb|EFK15418.1| transcription-repair coupling factor [Escherichia coli MS 116-1]
 gi|301077112|gb|EFK91918.1| transcription-repair coupling factor [Escherichia coli MS 146-1]
 gi|331038455|gb|EGI10675.1| transcription-repair coupling factor [Escherichia coli H736]
          Length = 1164

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSMVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|222032867|emb|CAP75606.1| Transcription-repair-coupling factor [Escherichia coli LF82]
 gi|312945676|gb|ADR26503.1| transcription-repair coupling factor [Escherichia coli O83:H1 str.
           NRG 857C]
          Length = 1148

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|194439730|ref|ZP_03071799.1| transcription-repair coupling factor [Escherichia coli 101-1]
 gi|194421349|gb|EDX37367.1| transcription-repair coupling factor [Escherichia coli 101-1]
          Length = 1148

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDTQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|157158427|ref|YP_001462347.1| transcription-repair coupling factor [Escherichia coli E24377A]
 gi|193070928|ref|ZP_03051859.1| transcription-repair coupling factor [Escherichia coli E110019]
 gi|157080457|gb|ABV20165.1| transcription-repair coupling factor [Escherichia coli E24377A]
 gi|192955782|gb|EDV86254.1| transcription-repair coupling factor [Escherichia coli E110019]
 gi|324117315|gb|EGC11222.1| transcription-repair coupling protein [Escherichia coli E1167]
          Length = 1148

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|187730283|ref|YP_001880716.1| transcription-repair coupling factor [Shigella boydii CDC 3083-94]
 gi|187427275|gb|ACD06549.1| transcription-repair coupling factor [Shigella boydii CDC 3083-94]
          Length = 1148

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|296082243|emb|CBI21248.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 143/378 (37%), Positives = 217/378 (57%), Gaps = 17/378 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           + PT  Q+ A  D+ +D++++   M R++ GDVG GKT VAL A+   V AG QA+++AP
Sbjct: 85  YEPTPDQKQAFIDVEEDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 144

Query: 330 IGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             +LA+QH++ I +++++   I V +++     A + K L  I HG   II+GTH+L  +
Sbjct: 145 TIVLAKQHFDVITERFSKYPNIKVGLLSRFQTTAEKEKHLRMIKHGDLDIIVGTHSLLGN 204

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + Y  L L++VDE+ RFGV+Q+ K+    T+  VL ++ATPIPRTL L   G  D S I
Sbjct: 205 RVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLI 264

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           +  P  R PI T +   N+ +++I  +K  L  G + +++ P+I        + + E   
Sbjct: 265 STPPPERVPIITHLSAYNK-EKIISAIKFELGRGGQIFYVLPRI--------KGLEEVME 315

Query: 509 SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            L   F    IAI HG+      E  MD F  G  K+LI T ++E G+D+ +A+ III+ 
Sbjct: 316 FLECSFPDVEIAIAHGKQYSKQLEETMDRFAQGEIKILICTNIVESGLDIQNANTIIIQE 375

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
            + FGLAQL+QLRGRVGR ++ +   L Y     LS  +  RLS L+   D   GF +AE
Sbjct: 376 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRDLGQGFQLAE 435

Query: 623 EDLKQRKEGEILGIKQSG 640
            D+  R  G I G +Q+G
Sbjct: 436 RDMGIRGFGNIFGEQQTG 453


>gi|330910930|gb|EGH39440.1| transcription-repair coupling factor [Escherichia coli AA86]
          Length = 1148

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|258621368|ref|ZP_05716402.1| transcription-repair coupling factor [Vibrio mimicus VM573]
 gi|258586756|gb|EEW11471.1| transcription-repair coupling factor [Vibrio mimicus VM573]
          Length = 1156

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 147/383 (38%), Positives = 213/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  L+ +A G+  I++GTH L  
Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKLILQDVADGKVDILVGTHKLLS 720

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + + + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 837 LVPE---------ARVTVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   G
Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970


>gi|194433692|ref|ZP_03065968.1| transcription-repair coupling factor [Shigella dysenteriae 1012]
 gi|194418121|gb|EDX34214.1| transcription-repair coupling factor [Shigella dysenteriae 1012]
          Length = 1148

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQHLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAITSLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|299362|gb|AAB26029.1| Mfd protein, transcription repair coupling factor, TRCF=mfd product
           [Escherichia coli, Peptide, 1148 aa]
          Length = 1148

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSMVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|16129077|ref|NP_415632.1| transcription-repair coupling factor [Escherichia coli str. K-12
           substr. MG1655]
 gi|89107960|ref|AP_001740.1| transcription-repair coupling factor [Escherichia coli str. K-12
           substr. W3110]
 gi|170080765|ref|YP_001730085.1| transcription-repair coupling factor [Escherichia coli str. K-12
           substr. DH10B]
 gi|238900368|ref|YP_002926164.1| transcription-repair coupling factor [Escherichia coli BW2952]
 gi|256023188|ref|ZP_05437053.1| transcription-repair coupling factor [Escherichia sp. 4_1_40B]
 gi|307137749|ref|ZP_07497105.1| transcription-repair coupling factor [Escherichia coli H736]
 gi|2507063|sp|P30958|MFD_ECOLI RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|1651547|dbj|BAA35929.1| transcription-repair coupling factor [Escherichia coli str. K12
           substr. W3110]
 gi|1787357|gb|AAC74198.1| transcription-repair coupling factor [Escherichia coli str. K-12
           substr. MG1655]
 gi|169888600|gb|ACB02307.1| transcription-repair coupling factor [Escherichia coli str. K-12
           substr. DH10B]
 gi|238863683|gb|ACR65681.1| transcription-repair coupling factor [Escherichia coli BW2952]
 gi|309701385|emb|CBJ00686.1| transcription-repair coupling factor [Escherichia coli ETEC H10407]
 gi|323937854|gb|EGB34118.1| transcription-repair coupling protein [Escherichia coli E1520]
 gi|323942583|gb|EGB38750.1| transcription-repair coupling protein [Escherichia coli E482]
          Length = 1148

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSMVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|301023324|ref|ZP_07187117.1| transcription-repair coupling factor [Escherichia coli MS 69-1]
 gi|300397049|gb|EFJ80587.1| transcription-repair coupling factor [Escherichia coli MS 69-1]
          Length = 1164

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|167855057|ref|ZP_02477830.1| transcription-repair coupling factor [Haemophilus parasuis 29755]
 gi|167853795|gb|EDS25036.1| transcription-repair coupling factor [Haemophilus parasuis 29755]
          Length = 1149

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 159/425 (37%), Positives = 237/425 (55%), Gaps = 23/425 (5%)

Query: 269  IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             PF  T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AV    Q  I+A
Sbjct: 603  FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVMNHKQVAILA 662

Query: 329  PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            P  +LAQQH+E  K    N  I VE+++       +++ L ++A G+  I++GTH L Q+
Sbjct: 663  PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKAQKEILAKVADGKVDILVGTHKLLQE 722

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +Q+  L L+++DE+HRFGV+Q+ ++ Q      +L +TATPIPRTL +   G  D+S I
Sbjct: 723  DVQFKDLGLLVIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMALNGMRDLSII 782

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
               PA R  IKT +   +  D VI+  + +L E   G + Y++   +     +   +  +
Sbjct: 783  ASPPARRLSIKTFVRQSD--DTVIK--EAILREILRGGQVYYLHNDV-----ATIENTAQ 833

Query: 506  RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            +   L     + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ III
Sbjct: 834  QLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFLI 620
            E A+ FGLAQLHQLRGRVGR    +   +L  PP  L+K++  RL   S + N   GF++
Sbjct: 892  ERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPPPKTLTKDAQQRLEAMSTIDNLGAGFVL 951

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
            A  DL+ R  GE+LG +QSG  + L     L+  LLE A K  +    ++P L  +  Q 
Sbjct: 952  ATHDLEIRGAGELLGSEQSGQIESLGF--SLYMELLENAVKALQE--GREPTLDEITQQQ 1007

Query: 681  IRILL 685
            + I L
Sbjct: 1008 VDIEL 1012


>gi|170020491|ref|YP_001725445.1| transcription-repair coupling factor [Escherichia coli ATCC 8739]
 gi|169755419|gb|ACA78118.1| transcription-repair coupling factor [Escherichia coli ATCC 8739]
          Length = 1164

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|74311675|ref|YP_310094.1| transcription-repair coupling factor [Shigella sonnei Ss046]
 gi|73855152|gb|AAZ87859.1| transcription-repair coupling factor [Shigella sonnei Ss046]
 gi|323165624|gb|EFZ51411.1| transcription-repair coupling factor [Shigella sonnei 53G]
          Length = 1148

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|324005970|gb|EGB75189.1| transcription-repair coupling factor [Escherichia coli MS 57-2]
          Length = 1164

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|323185763|gb|EFZ71124.1| transcription-repair coupling factor [Escherichia coli 1357]
          Length = 1148

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|300821105|ref|ZP_07101254.1| transcription-repair coupling factor [Escherichia coli MS 119-7]
 gi|331676906|ref|ZP_08377602.1| transcription-repair coupling factor [Escherichia coli H591]
 gi|300526404|gb|EFK47473.1| transcription-repair coupling factor [Escherichia coli MS 119-7]
 gi|331075595|gb|EGI46893.1| transcription-repair coupling factor [Escherichia coli H591]
          Length = 1164

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 607 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 666

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 667 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 726

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 727 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 786

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 787 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 837

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 838 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 895

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 896 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 955

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 956 GAGFALATHDLEIRGAGELLGEEQSG 981


>gi|260867476|ref|YP_003233878.1| transcription-repair coupling factor Mfd [Escherichia coli O111:H-
           str. 11128]
 gi|257763832|dbj|BAI35327.1| transcription-repair coupling factor Mfd [Escherichia coli O111:H-
           str. 11128]
          Length = 1148

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|227111702|ref|ZP_03825358.1| transcription-repair coupling factor [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 1149

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 211/386 (54%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    N  + +E+I+       + + LE    G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQVLEETQEGKVDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVRWRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILRETLRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                +R   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IEKATQRLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPS 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL   P  +S ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGDDQSG 965


>gi|82544418|ref|YP_408365.1| transcription-repair coupling factor [Shigella boydii Sb227]
 gi|81245829|gb|ABB66537.1| transcription-repair coupling factor [Shigella boydii Sb227]
 gi|320175622|gb|EFW50714.1| Transcription-repair coupling factor [Shigella dysenteriae CDC
           74-1112]
 gi|320184241|gb|EFW59055.1| Transcription-repair coupling factor [Shigella flexneri CDC 796-83]
 gi|332094450|gb|EGI99499.1| transcription-repair coupling factor [Shigella boydii 3594-74]
          Length = 1148

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|30062647|ref|NP_836818.1| transcription-repair coupling factor [Shigella flexneri 2a str.
           2457T]
 gi|30040893|gb|AAP16624.1| transcription-repair coupling factor [Shigella flexneri 2a str.
           2457T]
 gi|313650430|gb|EFS14837.1| transcription-repair coupling factor [Shigella flexneri 2a str.
           2457T]
 gi|332758277|gb|EGJ88600.1| transcription-repair coupling factor [Shigella flexneri 4343-70]
 gi|332759433|gb|EGJ89741.1| transcription-repair coupling factor [Shigella flexneri 2747-71]
 gi|332761054|gb|EGJ91341.1| transcription-repair coupling factor [Shigella flexneri K-671]
 gi|332767336|gb|EGJ97530.1| transcription-repair coupling factor [Shigella flexneri 2930-71]
 gi|333005518|gb|EGK25036.1| transcription-repair coupling factor [Shigella flexneri K-218]
 gi|333019350|gb|EGK38633.1| transcription-repair coupling factor [Shigella flexneri K-304]
          Length = 1148

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|332706023|ref|ZP_08426096.1| transcription-repair coupling factor mfd [Lyngbya majuscula 3L]
 gi|332355283|gb|EGJ34750.1| transcription-repair coupling factor mfd [Lyngbya majuscula 3L]
          Length = 1295

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 142/410 (34%), Positives = 230/410 (56%), Gaps = 17/410 (4%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            + LL +  Q  ++ G     +    Q++  + P+ PT  Q  AI+D+ +D+     M R+
Sbjct: 703  VDLLKLYAQRAQQSGYCFPADSPWQQELEDSFPYQPTPDQLKAIQDVKRDLESDRPMDRL 762

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GDVG GKT VA+ A+  AV +  Q   +AP  IL QQHY  IK+      I V ++  
Sbjct: 763  VCGDVGFGKTEVAIRAIFKAVTSNKQVAFLAPTTILTQQHYHTIKERFSPYPINVGLLNR 822

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                  +R  L+R+  G+  +++GTH L   S+ + +L L+++DE+ RFGV Q+ K+   
Sbjct: 823  FRSPQEKRDILQRLKTGELDVVVGTHQLLGKSVTFRELGLLVIDEEQRFGVNQKEKIKSF 882

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             T   VL ++ATPIPRTL ++  G  ++S IT  P  R+PIKT + P  + + V   +++
Sbjct: 883  KTQVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLSPY-KPEAVRTAIRM 941

Query: 478  VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             L  G + +++ P++E  E+  +  R ++           + IAI HG++   + ES+M 
Sbjct: 942  ELDRGGQVFYVVPRVEGIEEVAAELREMI---------LEARIAIAHGQLDPAELESIML 992

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            +F NG   +L+ TT+IE G+D+   + I+IE+A  FGLAQL+QLRGRVGR    +   LL
Sbjct: 993  TFSNGEADILVCTTIIESGLDIPRVNTIVIEDAHKFGLAQLYQLRGRVGRAGIQAHAWLL 1052

Query: 596  Y--HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
            Y     LS+ +  RL  ++       G+L+A  D++ R  G +LG++QSG
Sbjct: 1053 YPNQKVLSEAAKKRLRAIQEFTQLGSGYLLATRDMEIRGVGNLLGVEQSG 1102


>gi|191168584|ref|ZP_03030368.1| transcription-repair coupling factor [Escherichia coli B7A]
 gi|209918370|ref|YP_002292454.1| transcription-repair coupling factor [Escherichia coli SE11]
 gi|218553691|ref|YP_002386604.1| transcription-repair coupling factor [Escherichia coli IAI1]
 gi|218694647|ref|YP_002402314.1| transcription-repair coupling factor [Escherichia coli 55989]
 gi|260854597|ref|YP_003228488.1| transcription-repair coupling factor Mfd [Escherichia coli O26:H11
           str. 11368]
 gi|190901378|gb|EDV61143.1| transcription-repair coupling factor [Escherichia coli B7A]
 gi|209911629|dbj|BAG76703.1| transcription-repair coupling factor [Escherichia coli SE11]
 gi|218351379|emb|CAU97085.1| transcription-repair coupling factor [Escherichia coli 55989]
 gi|218360459|emb|CAQ98013.1| transcription-repair coupling factor [Escherichia coli IAI1]
 gi|257753246|dbj|BAI24748.1| transcription-repair coupling factor Mfd [Escherichia coli O26:H11
           str. 11368]
 gi|323156751|gb|EFZ42887.1| transcription-repair coupling factor [Escherichia coli EPECa14]
 gi|323175269|gb|EFZ60882.1| transcription-repair coupling factor [Escherichia coli LT-68]
 gi|323947582|gb|EGB43586.1| transcription-repair coupling protein [Escherichia coli H120]
          Length = 1148

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|193066296|ref|ZP_03047347.1| transcription-repair coupling factor [Escherichia coli E22]
 gi|194429791|ref|ZP_03062305.1| transcription-repair coupling factor [Escherichia coli B171]
 gi|260843354|ref|YP_003221132.1| transcription-repair coupling factor Mfd [Escherichia coli O103:H2
           str. 12009]
 gi|192926068|gb|EDV80711.1| transcription-repair coupling factor [Escherichia coli E22]
 gi|194412138|gb|EDX28446.1| transcription-repair coupling factor [Escherichia coli B171]
 gi|257758501|dbj|BAI29998.1| transcription-repair coupling factor Mfd [Escherichia coli O103:H2
           str. 12009]
 gi|323163658|gb|EFZ49480.1| transcription-repair coupling factor [Escherichia coli E128010]
          Length = 1148

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|253688855|ref|YP_003018045.1| transcription-repair coupling factor [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755433|gb|ACT13509.1| transcription-repair coupling factor [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 1150

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 211/386 (54%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 592 QLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 651

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    N  + +E+I+       + + LE    G+  I+IGT
Sbjct: 652 QVAVLVPTTLLAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQVLEETQEGKVDILIGT 711

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 712 HKLLQSDVRWRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 771

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 772 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREILRGGQVYYLYNDVE-----N 822

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                +R   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 823 IEKATQRLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPS 880

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL   P  +S ++  RL  + + ED 
Sbjct: 881 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAQKRLEAIASLEDL 940

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 941 GAGFALATHDLEIRGAGELLGDDQSG 966


>gi|240950267|ref|ZP_04754546.1| transcription-repair coupling factor [Actinobacillus minor NM305]
 gi|240295244|gb|EER46045.1| transcription-repair coupling factor [Actinobacillus minor NM305]
          Length = 1150

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 157/426 (36%), Positives = 238/426 (55%), Gaps = 23/426 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
              PF  T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AV    Q  I+
Sbjct: 602  TFPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVMNHKQVAIL 661

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            AP  +LAQQH+E  K    N  I VE+++       +++ L ++A G+  I++GTH L Q
Sbjct: 662  APTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKEILAKVADGKVDILVGTHKLLQ 721

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
            + +Q+  L L+++DE+HRFGV+Q+ ++ Q      +L +TATPIPRTL +   G  D+S 
Sbjct: 722  EDVQFKDLGLLVIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMALNGMRDLSI 781

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVV 504
            I   PA R  IKT +   +  D VI+  + +L E   G + Y++   +     +   +  
Sbjct: 782  IASPPARRLSIKTFVRQSD--DTVIK--EAILREILRGGQVYYLHNDV-----ATIENTA 832

Query: 505  ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            ++   L     + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ II
Sbjct: 833  QQLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTII 890

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619
            IE A+ FGLAQLHQLRGRVGR    +   +L  PP  L+K++  RL  + + ++   GF+
Sbjct: 891  IERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPPPKTLTKDAQQRLEAMSSIDNLGAGFV 950

Query: 620  IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
            +A  DL+ R  GE+LG +QSG  + L     L+  LLE A K  +    ++P L  +  Q
Sbjct: 951  LATHDLEIRGAGELLGSEQSGQIESLGF--SLYMELLENAVKALQE--GREPTLDEITQQ 1006

Query: 680  SIRILL 685
             + I L
Sbjct: 1007 QVDIEL 1012


>gi|56479827|ref|NP_707029.2| transcription-repair coupling factor [Shigella flexneri 2a str.
           301]
 gi|56383378|gb|AAN42736.2| transcription-repair coupling factor [Shigella flexneri 2a str.
           301]
          Length = 1148

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|323175654|gb|EFZ61248.1| transcription-repair coupling factor [Escherichia coli 1180]
          Length = 1148

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|262404233|ref|ZP_06080788.1| transcription-repair coupling factor [Vibrio sp. RC586]
 gi|262349265|gb|EEY98403.1| transcription-repair coupling factor [Vibrio sp. RC586]
          Length = 1155

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 147/383 (38%), Positives = 213/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  L+ +A G+  I++GTH L  
Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKLILQDVADGKVDILVGTHKLLS 720

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + + + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 837 LVPE---------ARVTVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   G
Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970


>gi|293433403|ref|ZP_06661831.1| transcription-repair coupling factor [Escherichia coli B088]
 gi|331667514|ref|ZP_08368378.1| transcription-repair coupling factor [Escherichia coli TA271]
 gi|291324222|gb|EFE63644.1| transcription-repair coupling factor [Escherichia coli B088]
 gi|320201009|gb|EFW75593.1| Transcription-repair coupling factor [Escherichia coli EC4100B]
 gi|331065099|gb|EGI36994.1| transcription-repair coupling factor [Escherichia coli TA271]
          Length = 1148

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|77460087|ref|YP_349594.1| transcription-repair coupling factor [Pseudomonas fluorescens
           Pf0-1]
 gi|77384090|gb|ABA75603.1| transcription-repair coupling factor [Pseudomonas fluorescens
           Pf0-1]
          Length = 1149

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 147/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q+S I+ + +DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 598 GFPFEETPDQQSTIEAVREDMLSPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAIL 657

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+ ++A G   I+IGTH L Q
Sbjct: 658 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVAQLAEGNIDIVIGTHKLLQ 717

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 718 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 777

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   V E L   L  G + Y++   ++  EK  +    +V 
Sbjct: 778 IATPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVP 836

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 837 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 887

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 888 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITGDAEKRLEAIANTQDLGAGFVL 947

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 948 ATNDLEIRGAGELLGDGQSG 967


>gi|257464856|ref|ZP_05629227.1| transcription-repair coupling factor [Actinobacillus minor 202]
 gi|257450516|gb|EEV24559.1| transcription-repair coupling factor [Actinobacillus minor 202]
          Length = 1151

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 157/425 (36%), Positives = 238/425 (56%), Gaps = 23/425 (5%)

Query: 269  IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             PF  T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AV    Q  I+A
Sbjct: 603  FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVMNHKQVAILA 662

Query: 329  PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            P  +LAQQH+E  K    N  I VE+++       +++ L ++A G+  I++GTH L Q+
Sbjct: 663  PTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKEILAKVADGKVDILVGTHKLLQE 722

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +Q+  L L+++DE+HRFGV+Q+ ++ Q      +L +TATPIPRTL +   G  D+S I
Sbjct: 723  DVQFKDLGLLVIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMALNGMRDLSII 782

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
               PA R  IKT +   +  D VI+  + +L E   G + Y++   +     +   +  +
Sbjct: 783  ASPPARRLSIKTFVRQSD--DTVIK--EAILREILRGGQVYYLHNDV-----ATIENTAQ 833

Query: 506  RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            +   L     + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ III
Sbjct: 834  QLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIII 891

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620
            E A+ FGLAQLHQLRGRVGR    +   +L  PP  L+K++  RL  + + ++   GF++
Sbjct: 892  ERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPPPKMLTKDAQQRLEAMSSIDNLGAGFVL 951

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
            A  DL+ R  GE+LG +QSG  + L     L+  LLE A K  +    ++P L  +  Q 
Sbjct: 952  ATHDLEIRGAGELLGSEQSGQIESLGF--SLYMELLENAVKALQE--GREPTLDEITQQQ 1007

Query: 681  IRILL 685
            + I L
Sbjct: 1008 VDIEL 1012


>gi|149192400|ref|ZP_01870600.1| transcription-repair coupling factor [Vibrio shilonii AK1]
 gi|148833765|gb|EDL50802.1| transcription-repair coupling factor [Vibrio shilonii AK1]
          Length = 702

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 146/381 (38%), Positives = 214/381 (56%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q  AI  ++ DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P
Sbjct: 150 PFEETDDQAQAINAVMSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVP 209

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQH+E  +    N  I VE+++       ++  L+ +A G+  I++GTH L    
Sbjct: 210 TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKAILQDVADGKVDIVVGTHKLLSSD 269

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           IQ+  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I 
Sbjct: 270 IQFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA 329

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVV 504
             PA R  IKT +      D V+   + +L E   G + Y++  Q+E  EK  ++   +V
Sbjct: 330 TPPARRLAIKTFVRQSE--DSVVR--EAILREIMRGGQVYFLHNQVETIEKVAADLEKLV 385

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + + + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II
Sbjct: 386 PE---------ARVTVAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANTII 436

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFL 619
           ++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF 
Sbjct: 437 MDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAVKRLDAIASLEDLGAGFT 496

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG +QSG
Sbjct: 497 LATHDLEIRGAGELLGDEQSG 517


>gi|297519880|ref|ZP_06938266.1| transcription-repair coupling factor [Escherichia coli OP50]
          Length = 612

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 55  QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 114

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 115 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 174

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 175 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 234

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 235 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 285

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 286 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 343

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 344 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 403

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 404 GAGFALATHDLEIRGAGELLGEEQSG 429


>gi|83645461|ref|YP_433896.1| transcription-repair coupling factor [Hahella chejuensis KCTC 2396]
 gi|83633504|gb|ABC29471.1| transcription-repair coupling factor [Hahella chejuensis KCTC 2396]
          Length = 1149

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 146/381 (38%), Positives = 216/381 (56%), Gaps = 21/381 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T  Q +AI  +LQDM +   M R++ GDVG GKT VA+ A   A  AG Q  I+ 
Sbjct: 599 FPFEETPDQATAINAVLQDMMKPRPMDRLVCGDVGFGKTEVAMRAAFLAAHAGRQVAILT 658

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQH++  +    +T I +E+I+         K  ++++ G+  I++GTH L Q 
Sbjct: 659 PTTLLAQQHFQSFQDRFADTAINIELISRFRSAGDIEKVKDKLSDGKVDILVGTHKLLQK 718

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            IQ+  L L+I+DE+HRFGVQQ+ K+        +L +TATPIPRTL L+  G  D+S I
Sbjct: 719 DIQFKNLGLLIIDEEHRFGVQQKEKVKSLRANIDILTLTATPIPRTLNLSFQGVRDLSII 778

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
              P  R  +KT +   N   I E +  L+ +L  G + +++  ++    K  S  + +V
Sbjct: 779 ATPPEKRLSVKTFVQEHNNSIIKEAV--LREIL-RGGQVFFLHNEVNTINKAASELQEMV 835

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + +A+ HG+M + + E VM  F +    +L+ TT+IE GID+  A+ II
Sbjct: 836 P---------DARVAVAHGQMRERELERVMSDFYHKRFNVLMCTTIIETGIDIPSANTII 886

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619
           IE A+ FGLAQLHQLRGRVGR    +   LL  PP  L++++  RL  + + +D   GF 
Sbjct: 887 IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPRNLTEDAKKRLDAISSAQDLGAGFT 946

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG +QSG
Sbjct: 947 LATHDLEIRGAGELLGEEQSG 967


>gi|322833632|ref|YP_004213659.1| transcription-repair coupling factor [Rahnella sp. Y9602]
 gi|321168833|gb|ADW74532.1| transcription-repair coupling factor [Rahnella sp. Y9602]
          Length = 1147

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 212/386 (54%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +  PF  T  Q  AI  +L DM+Q   M R++ GDVG GKT VA+ A   AV    
Sbjct: 591 QLFCQAFPFETTPDQAQAINAVLTDMTQPLAMDRLVCGDVGFGKTEVAMRAAFLAVSNNK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    +  + +E+++       +   LE    G+  IIIGT
Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFASWPVRIEMMSRFRSAKEQNVVLEDAVEGKVDIIIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQTDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRMAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                +R   L     + IAI HG+M + D E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IEKASQRLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  PP  +S +++ RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAMSADAHKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEGQSG 965


>gi|322386426|ref|ZP_08060055.1| transcription-repair coupling factor [Streptococcus cristatus ATCC
            51100]
 gi|321269512|gb|EFX52443.1| transcription-repair coupling factor [Streptococcus cristatus ATCC
            51100]
          Length = 1167

 Score =  237 bits (604), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 150/412 (36%), Positives = 231/412 (56%), Gaps = 27/412 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q  I+ P
Sbjct: 613  PYVETEDQLRSIQEIKKDMESDRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAILVP 672

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+   +  + V++++    +  +++ LE++  GQ  IIIGTH L    
Sbjct: 673  TTVLAQQHYTNFKERFNDFAVNVDVLSRFRSKGEQKETLEKLEKGQIDIIIGTHRLLSAD 732

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +++  L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 733  VKFSDLGLLVIDEEQRFGVKHKEKLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIE 792

Query: 450  EKPAGRKPIKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
              P  R P++T ++  N+    D V+      +  G + Y++  +++  E+K S  + ++
Sbjct: 793  TPPTNRYPVQTYVLENNKTVIRDAVLRE----IDRGGQVYYLYNKVDTIEQKVSELKELI 848

Query: 505  ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                       +SI  +HG+MS++  E+ +  F NG   +L+ TT+IE G+D+ +A+ + 
Sbjct: 849  PE---------ASIGYVHGQMSEVRLENTLLDFVNGEYDILVTTTIIETGVDIPNANTLF 899

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFL 619
            IENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   GF 
Sbjct: 900  IENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKSLTEVSEKRLEAIKGFTELGSGFK 959

Query: 620  IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
            IA  DL  R  G ILG  QSG    +    E++  LLE  IA+K  K    Q
Sbjct: 960  IAMRDLSIRGAGNILGSSQSGFIDSV--GFEMYSQLLEEAIAKKQGKETKRQ 1009


>gi|332077813|gb|EGI88272.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA41301]
          Length = 1171

 Score =  237 bits (604), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 149/399 (37%), Positives = 224/399 (56%), Gaps = 23/399 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIVQK 837

Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ + + + I
Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNTNTLFI 897

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
           ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           A  DL  R  G +LG  QSG    +    EL+  LLE A
Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEA 994


>gi|295698372|ref|YP_003603027.1| ATP-dependent DNA helicase RecG [Candidatus Riesia pediculicola
           USDA]
 gi|291157022|gb|ADD79467.1| ATP-dependent DNA helicase RecG [Candidatus Riesia pediculicola
           USDA]
          Length = 498

 Score =  236 bits (603), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 165/460 (35%), Positives = 252/460 (54%), Gaps = 28/460 (6%)

Query: 42  IDLLFYHPSSFIDRHYRPKISEIS--EERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           +DL+FY P ++ D+     I+E+   EE  VT   +         +K+   +I L D +G
Sbjct: 39  LDLIFYFPKNYKDQTKLSLINELKNGEEAFVTAKVFRKNLK----EKKNQVEIYLRDRSG 94

Query: 100 EITLLFFYRKTEMLKNVFFEGRK-ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL--- 155
           E+ + FF   +  L+  FF+    I V GK  + KN+I M+HP Y   NS   NF L   
Sbjct: 95  ELIVKFF--NSSFLRKKFFKKNSYIQVYGKAYRQKNKIFMIHPEYKILNSFS-NFSLCNF 151

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK---KSFPSIAEAFNIIHNP 212
           +  +Y   +G+  D    I       + ++   I +DL+ K   K+F    +A   IH+P
Sbjct: 152 LTPIYPNISGIRQDK---IHKIIKKSIRMIDHCIVQDLIPKPFNKNFIRFQQAIKNIHHP 208

Query: 213 RKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
                     ++  PA++RL ++ELLA Q++ L ++K+       P+ V+  I +KI++N
Sbjct: 209 NSRCSLNELKKYQHPAQKRLIFEELLAFQLSFLKIKKRNFLLSATPLIVKQSIKKKIIQN 268

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +P+S T SQ++AIK+I  D+S+   M R+L GDVG+GKT+VAL +   A+    Q  +M 
Sbjct: 269 LPYSLTNSQKNAIKEIESDLSKNVPMKRLLYGDVGTGKTIVALFSSLCAISNEKQVALMT 328

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QH +F KK  +     V  +  +  + +    L+ I  G+A +IIGTH++FQD
Sbjct: 329 PTEILAKQHADFFKKILKPIGKRVIQLCKDSDRKNYESKLDEIKKGKALVIIGTHSIFQD 388

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMTATPIPRTLVLTSLGDID 444
            I +  L LVI+DEQHRFGV QR KL +K     T  H L+MTATPIPRTL +    ++D
Sbjct: 389 KIDFCSLSLVIIDEQHRFGVSQRSKLLKKGKLCGTHVHQLIMTATPIPRTLSMQIYANLD 448

Query: 445 ISKITE-KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            S I       R P++T+II   R DE+I R+K +  + K
Sbjct: 449 ASSIDNLHNPKRIPVRTIIISNIRRDELIYRIKNIFEKKK 488


>gi|301300308|ref|ZP_07206515.1| transcription-repair coupling factor [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852081|gb|EFK79758.1| transcription-repair coupling factor [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 1174

 Score =  236 bits (603), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 144/429 (33%), Positives = 238/429 (55%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R      E +A ++  L  +++ +K  G     +    ++     P++ T  Q 
Sbjct: 568 EWAKTKRRVANKIEDIADELVDLYAKREAEK--GYAFTPDDSYQKEFEDAFPYTETPDQL 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + K+I QDM +   M R+L GDVG GKT VAL A   AV+ G Q   +AP  +LAQQHY
Sbjct: 626 RSAKEIKQDMEKTKPMDRLLIGDVGYGKTEVALRAAFKAVQDGKQVAFLAPTTVLAQQHY 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +++  +N  + + I++        ++ +E +  G+  I++GTH L    +++  L L+
Sbjct: 686 ETMEQRFENFPVEIGILSRFNTAKEIKETIENLETGKLDIVVGTHRLLSKDVKFADLGLL 745

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L +  T+  VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746 IIDEEQRFGVKHKERLKELKTSVDVLTLTATPIPRTLNMSMLGVRDLSVIETAPMNRYPI 805

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
           +T +I  N    +++ +K  +  G + +++  +++  EK  S   S+V           +
Sbjct: 806 QTYVIEKN-YGVIVDGIKREIERGGQVFYLHNRVDDIEKVASELESLVPE---------A 855

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A IHGRM++   E+++  F +G   +L+ TT+IE G+D+ + + + ++NA+  GL+QL
Sbjct: 856 KVAYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRKGLSQL 915

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGRVGR   I+    +Y P   L++ +  RL  +K+ TE   GF IA  DL  R  G
Sbjct: 916 YQLRGRVGRSNRIAYAYFMYQPNKVLTEVAEKRLEAIKDFTELGSGFKIAMRDLSIRGAG 975

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 976 NLLGKQQHG 984


>gi|18396054|ref|NP_566160.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|332640233|gb|AEE73754.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
          Length = 823

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 143/381 (37%), Positives = 222/381 (58%), Gaps = 17/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             P++ T  Q+ A  D+ +D++++   M R++ GDVG GKT VAL A+   V  G QA++
Sbjct: 265 QFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSTGKQAMV 324

Query: 327 MAPIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +AP  +LA+QHY+ I ++++    I V +++    +A + + LE I  G  +II+GTH+L
Sbjct: 325 LAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTGHLNIIVGTHSL 384

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               + Y  L L++VDE+ RFGV+Q+ K+    T+  VL ++ATPIPRTL L   G  D 
Sbjct: 385 LGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDA 444

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I+  P  R PIKT +    R ++VIE +K  L  G + +++ P+I        + + E
Sbjct: 445 SLISTPPPERIPIKTHLSSF-RKEKVIEAIKNELDRGGQVFYVLPRI--------KGLEE 495

Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             + L E F    IA+ HG+      E  M+ F  G  K+LI T ++E G+D+ +A+ II
Sbjct: 496 VMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTII 555

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619
           I++ + FGLAQL+QLRGRVGR ++ +   L Y     LS  +  RLS L+   +   GF 
Sbjct: 556 IQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQ 615

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +AE+D+  R  G I G +Q+G
Sbjct: 616 LAEKDMGIRGFGTIFGEQQTG 636


>gi|262165996|ref|ZP_06033733.1| transcription-repair coupling factor [Vibrio mimicus VM223]
 gi|262025712|gb|EEY44380.1| transcription-repair coupling factor [Vibrio mimicus VM223]
          Length = 981

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 146/383 (38%), Positives = 213/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 426 TFPFEETDDQAMAINAVLSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 485

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ +  G+  I++GTH L  
Sbjct: 486 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVTDGKVDILVGTHKLLS 545

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 546 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 605

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 606 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 661

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + + + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 662 LVPE---------ARVTVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 712

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   G
Sbjct: 713 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 772

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 773 FTLATHDLEIRGAGELLGEEQSG 795


>gi|312883532|ref|ZP_07743257.1| transcription-repair coupling factor [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368755|gb|EFP96282.1| transcription-repair coupling factor [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 1154

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 214/382 (56%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  ++ DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 600 GFPFEETDDQAMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 659

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ LE I  G+  +++GTH L  
Sbjct: 660 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKRILEDIEAGKVDLVVGTHKLLS 719

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 720 NDIKFKDLGLLIVDEEHRFGVRQKEKMKSMRADVDILTLTATPIPRTLNMAMSGMRDLSI 779

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  IKT    + + D+V+ R   +  +  G + Y++  Q+E  EK  S    +
Sbjct: 780 IATPPARRLAIKTF---VRQKDDVVVREAALREIMRGGQVYFLHNQVETIEKVASELEKL 836

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +           + +   HG+M + + E +M+ F +    LL+ TT+IE GIDV  A+ I
Sbjct: 837 IPE---------ARVTFAHGQMRERELEQIMNDFYHQRYNLLVCTTIIETGIDVPTANTI 887

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618
           I++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF
Sbjct: 888 IMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAGF 947

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 948 TLATHDLEIRGAGELLGDEQSG 969


>gi|149376584|ref|ZP_01894344.1| transcription-repair coupling protein Mfd [Marinobacter algicola
           DG893]
 gi|149359102|gb|EDM47566.1| transcription-repair coupling protein Mfd [Marinobacter algicola
           DG893]
          Length = 1038

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 150/432 (34%), Positives = 236/432 (54%), Gaps = 27/432 (6%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W++  ++ L      A ++  +  R++ +K  G       +  +      PF  T  Q++
Sbjct: 444 WSNAKQKALEKIRDTAAELLDVYARREARK--GFAFEDPKEAYRAFAAGFPFEETPDQQA 501

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+ + +DM  +  M R++ GDVG GKT VA+ A   A  +G Q  ++ P  +LAQQHYE
Sbjct: 502 AIEAVFEDMVSEKPMDRLVCGDVGFGKTEVAMRAAFMATYSGKQVAVLVPTTLLAQQHYE 561

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +     T + VE+++         KA+  I  G+A I+IGTH L Q  I++  L LVI
Sbjct: 562 SFRDRFSETAVHVELLSRFRSGGQTTKAMAAIEAGKADIVIGTHKLLQGDIKFKNLGLVI 621

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DISKITEKPAGRKPI 458
           +DE+HRFGVQQ+ +L        +L +TATPIPRTL + ++G + D+S I   PA R  +
Sbjct: 622 IDEEHRFGVQQKERLKALRAEVDMLNLTATPIPRTLNM-AMGHLRDLSIIATPPARRLSV 680

Query: 459 KTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEH 513
           KT    + + DE + + + +L E   G + Y++   +   EK   + R ++         
Sbjct: 681 KTF---VRQRDEAMVK-EAILREVLRGGQVYFLHNDVATIEKTAEDLRQLIPE------- 729

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             + + + HG+M + + E +M  F +    +L+ TT+IE GID+  A+ IIIE A+ FGL
Sbjct: 730 --ARVGVAHGQMRERELEQIMSDFYHKRFNVLVCTTIIETGIDIPSANTIIIERADKFGL 787

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           AQLHQLRGRVGR    +   LL  PP  ++ ++  RL  +   +D   GF++A  DL+ R
Sbjct: 788 AQLHQLRGRVGRSHHQAYAYLLTPPPRSITSDAKKRLEAISEAQDLGAGFMLATHDLEIR 847

Query: 629 KEGEILGIKQSG 640
             GE+LG +QSG
Sbjct: 848 GAGELLGEEQSG 859


>gi|145331730|ref|NP_001078092.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|6513947|gb|AAF14851.1|AC011664_33 putative helicase [Arabidopsis thaliana]
 gi|332640234|gb|AEE73755.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
          Length = 822

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 143/381 (37%), Positives = 222/381 (58%), Gaps = 17/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             P++ T  Q+ A  D+ +D++++   M R++ GDVG GKT VAL A+   V  G QA++
Sbjct: 264 QFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSTGKQAMV 323

Query: 327 MAPIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +AP  +LA+QHY+ I ++++    I V +++    +A + + LE I  G  +II+GTH+L
Sbjct: 324 LAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTGHLNIIVGTHSL 383

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               + Y  L L++VDE+ RFGV+Q+ K+    T+  VL ++ATPIPRTL L   G  D 
Sbjct: 384 LGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDA 443

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I+  P  R PIKT +    R ++VIE +K  L  G + +++ P+I        + + E
Sbjct: 444 SLISTPPPERIPIKTHLSSF-RKEKVIEAIKNELDRGGQVFYVLPRI--------KGLEE 494

Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             + L E F    IA+ HG+      E  M+ F  G  K+LI T ++E G+D+ +A+ II
Sbjct: 495 VMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTII 554

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619
           I++ + FGLAQL+QLRGRVGR ++ +   L Y     LS  +  RLS L+   +   GF 
Sbjct: 555 IQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQ 614

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +AE+D+  R  G I G +Q+G
Sbjct: 615 LAEKDMGIRGFGTIFGEQQTG 635


>gi|254374445|ref|ZP_04989927.1| hypothetical protein FTDG_00614 [Francisella novicida GA99-3548]
 gi|151572165|gb|EDN37819.1| hypothetical protein FTDG_00614 [Francisella novicida GA99-3548]
          Length = 1141

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +   + P+  T  Q SAI D+ +DM     M R++ GDVG GKT +A+ A   A +   Q
Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQ 648

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             I+ P  ILAQQHY   K    NT + +E+IT +     +++  E +  G   IIIGTH
Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFEDLKKGTVDIIIGTH 708

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L    I +  L L+I+DE+HRFGV Q+ KL        +L M+ATPIPR+L +      
Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768

Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499
           D+S I   PA R  +KT +     N I E + R  +    G + +++  ++E  +KK+  
Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            + +  R           IAI HG+MS+ + + VM  FK+    +L+ TT+IE GID+ +
Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616
           A+ +IIE+A + GLAQLHQLRGRVGR    +   +L      ++K++  RL  + NTE  
Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEASITKDALKRLEAISNTESL 936

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GEILG +QSG
Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962


>gi|209809474|ref|YP_002265012.1| transcription-repair coupling factor [Aliivibrio salmonicida
           LFI1238]
 gi|208011036|emb|CAQ81450.1| transcription-repair coupling factor [Aliivibrio salmonicida
           LFI1238]
          Length = 1151

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 149/383 (38%), Positives = 215/383 (56%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  QE AI D+L DM Q   M R++ GDVG GKT VA+ A   A     Q  ++
Sbjct: 600 SFPFEETHDQEIAINDVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFLATNNEKQVAVL 659

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L   A G+  I+IGTH L Q
Sbjct: 660 VPTTLLAQQHFENFRDRFANFPIRVEVLSRFKSAKEQKEILAATAEGKVDILIGTHKLLQ 719

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           DSI++  L L++VDE+HRFGV+Q+ K+    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 720 DSIKFDDLGLLVVDEEHRFGVRQKEKVKAMRSDVDILTLTATPIPRTLNMAMSGMRDLSI 779

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +    + D+VI+  + +L E   G + Y +   +E  E    +  +
Sbjct: 780 IATPPARRLAIKTFV--REKADDVIK--EAILREIKRGGQVYVLHNNVETIESAAKDIEN 835

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           ++           + + + HG+M + + E +M  F +    +L+ TT+IE GIDV  A+ 
Sbjct: 836 LIPE---------ARVTLAHGQMRERELERIMGDFYHQRFNVLVCTTIIETGIDVPTANT 886

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617
           II+E A+  GLAQLHQLRGRVGR    +   LL  HP  LSK++  RL  + + ED   G
Sbjct: 887 IIMERADKLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKALSKDAVKRLDAIASLEDLGAG 946

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG  QSG
Sbjct: 947 FTLATHDLEIRGAGELLGDGQSG 969


>gi|260776195|ref|ZP_05885090.1| transcription-repair coupling factor [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607418|gb|EEX33683.1| transcription-repair coupling factor [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1153

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 145/383 (37%), Positives = 216/383 (56%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  ++ DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 599 GFPFEETDDQSMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFLATDNGKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ I  G+  +++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKQVLQDIEDGKVDLVVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 NDIKFKDLGLLIVDEEHRFGVRQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +    R D V+   + VL E   G + Y++  Q+E  EK  ++   
Sbjct: 779 IATPPARRLAIKTFV--RQRDDAVVR--EAVLREIMRGGQIYFLHNQVETIEKVAADLEK 834

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           ++           + I + HG+M + + E +M+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 835 LIPE---------ARITVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANT 885

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617
           II++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   G
Sbjct: 886 IIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAG 945

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 946 FTLATHDLEIRGAGELLGDEQSG 968


>gi|225451661|ref|XP_002276313.1| PREDICTED: similar to DEAD/DEAH box helicase, putative [Vitis
           vinifera]
          Length = 823

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 143/378 (37%), Positives = 217/378 (57%), Gaps = 17/378 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           + PT  Q+ A  D+ +D++++   M R++ GDVG GKT VAL A+   V AG QA+++AP
Sbjct: 268 YEPTPDQKQAFIDVEEDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 327

Query: 330 IGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             +LA+QH++ I +++++   I V +++     A + K L  I HG   II+GTH+L  +
Sbjct: 328 TIVLAKQHFDVITERFSKYPNIKVGLLSRFQTTAEKEKHLRMIKHGDLDIIVGTHSLLGN 387

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + Y  L L++VDE+ RFGV+Q+ K+    T+  VL ++ATPIPRTL L   G  D S I
Sbjct: 388 RVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLI 447

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           +  P  R PI T +   N+ +++I  +K  L  G + +++ P+I        + + E   
Sbjct: 448 STPPPERVPIITHLSAYNK-EKIISAIKFELGRGGQIFYVLPRI--------KGLEEVME 498

Query: 509 SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            L   F    IAI HG+      E  MD F  G  K+LI T ++E G+D+ +A+ III+ 
Sbjct: 499 FLECSFPDVEIAIAHGKQYSKQLEETMDRFAQGEIKILICTNIVESGLDIQNANTIIIQE 558

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
            + FGLAQL+QLRGRVGR ++ +   L Y     LS  +  RLS L+   D   GF +AE
Sbjct: 559 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRDLGQGFQLAE 618

Query: 623 EDLKQRKEGEILGIKQSG 640
            D+  R  G I G +Q+G
Sbjct: 619 RDMGIRGFGNIFGEQQTG 636


>gi|254508504|ref|ZP_05120622.1| transcription-repair coupling factor [Vibrio parahaemolyticus 16]
 gi|219548529|gb|EED25536.1| transcription-repair coupling factor [Vibrio parahaemolyticus 16]
          Length = 1153

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 217/382 (56%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q+ AI  ++ DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 599 GFPFEETDDQKMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFLATDNGKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ I  G+  +++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKQVLQDIEEGKVDLVVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 NDIKFKDLGLLIVDEEHRFGVRQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  IKT    + + D+ + R  V+  +  G + Y++  Q+E  EK  ++   +
Sbjct: 779 IATPPARRLAIKTF---VRQSDDAVIREAVLREIMRGGQVYFLHNQVETIEKVAADLEKL 835

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +           + + + HG+M + + E +M+ F +    LL+ TT+IE GIDV  A+ I
Sbjct: 836 IPE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTI 886

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618
           I++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF
Sbjct: 887 IMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGF 946

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 947 TLATHDLEIRGAGELLGDEQSG 968


>gi|82777273|ref|YP_403622.1| transcription-repair coupling factor [Shigella dysenteriae Sd197]
 gi|309788186|ref|ZP_07682792.1| transcription-repair coupling factor [Shigella dysenteriae 1617]
 gi|81241421|gb|ABB62131.1| transcription-repair coupling factor [Shigella dysenteriae Sd197]
 gi|308924038|gb|EFP69539.1| transcription-repair coupling factor [Shigella dysenteriae 1617]
          Length = 1148

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 152/409 (37%), Positives = 223/409 (54%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     E +  Q    + PF  T  Q  AI  +L DM Q   M R++ 
Sbjct: 568 LLDIYAQRAAKEGFAFKHEREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+  +    N  + +E+++   
Sbjct: 628 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + + L  +A G+  I+IGTH L Q  +++  L L+IVDE+HRFGV+ + ++     
Sbjct: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
             ++L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 748 NVNILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAIL 803

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N +   ER   L     + IAI HG+M + + E VM+ 
Sbjct: 804 REILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIAIGHGQMRERELERVMND 856

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916

Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            HP  ++ ++  RL    + ED   GF +A  DL+ R  GE+LG +QSG
Sbjct: 917 PHPKAMTTDAQKRLEATASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965


>gi|127512559|ref|YP_001093756.1| transcription-repair coupling factor [Shewanella loihica PV-4]
 gi|126637854|gb|ABO23497.1| transcription-repair coupling factor [Shewanella loihica PV-4]
          Length = 1160

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 153/431 (35%), Positives = 236/431 (54%), Gaps = 25/431 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           WT   R+ +     +A ++  +  R+Q +   G    ++ +   +   + PF  T  QE+
Sbjct: 558 WTKAKRKAIEKIRDVAAELLDVYARRQARP--GEACRLDREEYAQFAGSFPFEETVDQET 615

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHYE
Sbjct: 616 AIDAVLTDMCSPISMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTLLAQQHYE 675

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  I +E+++       ++  L+++  GQ  I+IGTH L Q   ++  L L+I
Sbjct: 676 NFKDRFADWPIKIEVMSRFKTAKEQQAVLKQLELGQVDIVIGTHKLLQSEAKFENLGLLI 735

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 736 IDEEHRFGVRQKEKIKALRANIDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVK 795

Query: 460 TVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           T    +   D+   R + +L E   G + Y++   +E  EK+     +++          
Sbjct: 796 TF---VREYDDATVR-EALLREILRGGQVYFLHNSVETIEKRAREIEALLPE-------- 843

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + +   HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ IIIE A++FGLA
Sbjct: 844 -ARVVTAHGQMRERDLEKVMSDFYHQKYNVLVCTTIIETGIDVPSANTIIIERADNFGLA 902

Query: 575 QLHQLRGRVGRG-EEISSCILLYHPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QLHQLRGRVGR   +  + +++ HP  ++K++  RL  +   ED   GF++A +DL+ R 
Sbjct: 903 QLHQLRGRVGRSHHQAYAYLMMPHPKRMTKDAIKRLEAIGALEDLGAGFMLATQDLEIRG 962

Query: 630 EGEILGIKQSG 640
            GE+LG +QSG
Sbjct: 963 AGELLGDEQSG 973


>gi|322412921|gb|EFY03828.1| putative transcription-repair coupling factor [Streptococcus
            dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 1166

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 154/441 (34%), Positives = 237/441 (53%), Gaps = 25/441 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  +  ++ G   + +  +      +  F  T+ Q  +I +I  DM     M  +L 
Sbjct: 579  LLALYAERSQQKGFQFSPDDDLQWSFDDDFAFVETEDQIRSINEIKADMESVQPMDSLLI 638

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K   +N  + V++++   
Sbjct: 639  GDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             +  + + LER+  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 699  SKKEQAQTLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R   
Sbjct: 759  KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815

Query: 478  VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +  G + +++  +++  +KK +  + +V           +SI  +HG+MS+I  E+ + 
Sbjct: 816  EMDRGGQVFYVYNKVDTIDKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             F NG   +L+ATT+IE G+D+ + + + +ENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 867  DFINGEYDVLVATTIIETGVDISNVNTLFVENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926

Query: 596  YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E
Sbjct: 927  YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984

Query: 651  LHDSLLE--IARKDAKHILTQ 669
            ++  LLE  IA K  K  + Q
Sbjct: 985  MYSQLLEQAIASKQGKTTVRQ 1005


>gi|209773002|gb|ACI84813.1| transcription-repair coupling factor [Escherichia coli]
 gi|326339337|gb|EGD63151.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str.
           1125]
          Length = 1148

 Score =  236 bits (602), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|227891598|ref|ZP_04009403.1| transcription-repair coupling factor [Lactobacillus salivarius ATCC
           11741]
 gi|227866745|gb|EEJ74166.1| transcription-repair coupling factor [Lactobacillus salivarius ATCC
           11741]
          Length = 1174

 Score =  236 bits (602), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 144/429 (33%), Positives = 238/429 (55%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R      E +A ++  L  +++ +K  G     +    ++     P++ T  Q 
Sbjct: 568 EWAKTKRRVANKIEDIADELVDLYAKREAEK--GYAFTPDDSYQKEFEDAFPYTETPDQL 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + K+I QDM +   M R+L GDVG GKT VAL A   AV+ G Q   +AP  +LAQQHY
Sbjct: 626 RSSKEIKQDMEKLKPMDRLLIGDVGYGKTEVALRAAFKAVQDGKQVAFLAPTTVLAQQHY 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +++  +N  + + I++        ++ +E +  G+  I++GTH L    +++  L L+
Sbjct: 686 ETMEQRFENFPVEIGILSRFNTAKEIKETIENLETGKLDIVVGTHRLLSKDVKFADLGLL 745

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L +  T+  VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746 IIDEEQRFGVKHKERLKELKTSVDVLTLTATPIPRTLNMSMLGVRDLSVIETAPMNRYPI 805

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
           +T +I  N    +++ +K  +  G + +++  +++  EK  S   S+V           +
Sbjct: 806 QTYVIEKN-YGVIVDGIKREIERGGQVFYLHNRVDDIEKVASELESLVPE---------A 855

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A IHGRM++   E+++  F +G   +L+ TT+IE G+D+ + + + ++NA+  GL+QL
Sbjct: 856 KVAYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRMGLSQL 915

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGRVGR   I+    +Y P   L++ +  RL  +K+ TE   GF IA  DL  R  G
Sbjct: 916 YQLRGRVGRSNRIAYAYFMYQPNKVLTEVAEKRLEAIKDFTELGSGFKIAMRDLSIRGAG 975

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 976 NLLGKQQHG 984


>gi|319426232|gb|ADV54306.1| transcription-repair coupling factor [Shewanella putrefaciens 200]
          Length = 1162

 Score =  236 bits (602), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 158/430 (36%), Positives = 233/430 (54%), Gaps = 29/430 (6%)

Query: 267  RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            +  PF  T  QESAI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V+
Sbjct: 607  QGFPFEETVDQESAIHAVLADMRSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVV 666

Query: 327  MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            + P  +LAQQHYE  K    +  ++ E+++       + + L+++  G+  I+IGTH L 
Sbjct: 667  LVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLL 726

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            Q   ++  L L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S
Sbjct: 727  QSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLS 786

Query: 447  KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFR 501
             I   PA R  +KT +    R  ++    + +L E   G + Y++   +E  EK      
Sbjct: 787  IIATPPAKRLAVKTFV----RESDLATVREAILREILRGGQVYYLHNNVESIEKCAQGII 842

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             +V           + + + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+
Sbjct: 843  DLVPE---------ARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSAN 893

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED--- 616
             IIIE A+ FGLAQLHQLRGRVGR    +   L+  HP  ++ ++  RL  +   ED   
Sbjct: 894  TIIIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGA 953

Query: 617  GFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            GF++A +DL+ R  GE+LG +QSG + K   +   L+  +LE A K  K    ++P L  
Sbjct: 954  GFMLATQDLEIRGAGELLGDEQSGHISKIGFS---LYMEMLEAAVKALKQ--GKEPSLAQ 1008

Query: 676  VRGQSIRILL 685
            +  Q   I L
Sbjct: 1009 MLNQQCEIEL 1018


>gi|251792001|ref|YP_003006721.1| transcription-repair coupling factor [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533388|gb|ACS96634.1| transcription-repair coupling factor [Aggregatibacter aphrophilus
           NJ8700]
          Length = 1151

 Score =  236 bits (602), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 146/409 (35%), Positives = 233/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  Q  AI  ++ DM+    M R++ 
Sbjct: 570 LLDVYAQREAQKGFAFRYDREEFQQFTATFPFEETHDQLMAINAVISDMTLPKAMDRLVC 629

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++  K    N  + VE+++   
Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHFDNFKDRFANLPVNVEMLSRFK 689

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ ++ +A G+  I+IGTH + Q  +Q++ L L+I+DE+HRFGV+Q+ K+ Q   
Sbjct: 690 TAKEQKQVIQDLADGKVDILIGTHKIIQGDVQFHDLGLLIIDEEHRFGVRQKEKMKQLRA 749

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + DE++ R + +L
Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLTIKTF---VRQTDELVIR-EAIL 805

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A++FGLAQLHQLRGRVGR    +   LL 
Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQAYAYLLT 918

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L++ ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 919 PPPKLMTKDAQKRLEALESLDNLGAGFILATHDLEIRGAGELLGNEQSG 967


>gi|117621017|ref|YP_856534.1| transcription-repair coupling factor [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562424|gb|ABK39372.1| transcription-repair coupling factor [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1154

 Score =  236 bits (602), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 148/382 (38%), Positives = 210/382 (54%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI  +L DM Q   M R++ GDVG GKT VA+ A   AV  G Q  ++
Sbjct: 602 GFPFEETDDQLNAINAVLGDMCQAKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAVL 661

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY+  +    N  + VE+++       +   ++ +A G+  IIIGTH L  
Sbjct: 662 VPTTLLAQQHYDNFRDRFANWPVRVEVLSRFRSAKEQTAVMKELAEGKVDIIIGTHKLLG 721

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             + +  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 722 AELTFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMRDLSI 781

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  IKT    + + +  + R  V+  L  G + Y++   +E  EK  ++   +
Sbjct: 782 IATPPAKRLAIKTF---VRQQEPAVTREAVLRELKRGGQVYYLHNDVESIEKCAADLAEL 838

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V           + I I HG+M + + E VM  F +    LL+ TT+IE GIDV  A+ I
Sbjct: 839 VPE---------ARIGIAHGQMRERELERVMSDFYHQRFNLLVCTTIIETGIDVPSANTI 889

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPL-SKNSYTRLSVLKNTED---GF 618
           I++ A+H GLAQLHQLRGRVGR    +   LL  HP L +K++  RL  + + ED   GF
Sbjct: 890 IMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKLMTKDAAKRLEAIASLEDLGAGF 949

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG  QSG
Sbjct: 950 ALATHDLEIRGAGELLGDDQSG 971


>gi|15830746|ref|NP_309519.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           Sakai]
 gi|168751336|ref|ZP_02776358.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757829|ref|ZP_02782836.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764889|ref|ZP_02789896.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771340|ref|ZP_02796347.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4486]
 gi|168783484|ref|ZP_02808491.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790092|ref|ZP_02815099.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC869]
 gi|168802501|ref|ZP_02827508.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC508]
 gi|195938873|ref|ZP_03084255.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809609|ref|ZP_03251946.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815000|ref|ZP_03256179.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822485|ref|ZP_03262804.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399391|ref|YP_002269959.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328545|ref|ZP_03444627.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           TW14588]
 gi|254792497|ref|YP_003077334.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226982|ref|ZP_05941263.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256216|ref|ZP_05948749.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282134|ref|YP_003498952.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
           CB9615]
 gi|13360956|dbj|BAB34915.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           Sakai]
 gi|188014612|gb|EDU52734.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999153|gb|EDU68139.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355265|gb|EDU73684.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359855|gb|EDU78274.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365183|gb|EDU83599.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370352|gb|EDU88768.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC869]
 gi|189375509|gb|EDU93925.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC508]
 gi|208729410|gb|EDZ79011.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731648|gb|EDZ80336.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737970|gb|EDZ85653.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160791|gb|ACI38224.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4115]
 gi|209772998|gb|ACI84811.1| transcription-repair coupling factor [Escherichia coli]
 gi|209773000|gb|ACI84812.1| transcription-repair coupling factor [Escherichia coli]
 gi|209773004|gb|ACI84814.1| transcription-repair coupling factor [Escherichia coli]
 gi|209773006|gb|ACI84815.1| transcription-repair coupling factor [Escherichia coli]
 gi|217318972|gb|EEC27398.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591897|gb|ACT71258.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           TW14359]
 gi|290762007|gb|ADD55968.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
           CB9615]
 gi|320188121|gb|EFW62786.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC1212]
 gi|320637565|gb|EFX07365.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           G5101]
 gi|320643126|gb|EFX12327.1| transcription-repair coupling factor [Escherichia coli O157:H- str.
           493-89]
 gi|320648584|gb|EFX17239.1| transcription-repair coupling factor [Escherichia coli O157:H- str.
           H 2687]
 gi|320653898|gb|EFX21972.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659379|gb|EFX26948.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320664514|gb|EFX31665.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326340418|gb|EGD64221.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str.
           1044]
          Length = 1148

 Score =  236 bits (602), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|208779432|ref|ZP_03246778.1| transcription-repair coupling factor [Francisella novicida FTG]
 gi|208745232|gb|EDZ91530.1| transcription-repair coupling factor [Francisella novicida FTG]
          Length = 1141

 Score =  236 bits (602), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +   + P+  T  Q SAI D+ +DM     M R++ GDVG GKT +A+ A   A +   Q
Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQ 648

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             I+ P  ILAQQHY   K    NT + +E+IT +     +++  E +  G   IIIGTH
Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFEDLKKGTVDIIIGTH 708

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L    I +  L L+I+DE+HRFGV Q+ KL        +L M+ATPIPR+L +      
Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768

Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499
           D+S I   PA R  +KT +     N I E + R  +    G + +++  ++E  +KK+  
Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            + +  R           IAI HG+MS+ + + VM  FK+    +L+ TT+IE GID+ +
Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616
           A+ +IIE+A + GLAQLHQLRGRVGR    +   +L      ++K++  RL  + NTE  
Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEASITKDALKRLEAISNTESL 936

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GEILG +QSG
Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962


>gi|118497630|ref|YP_898680.1| transcription-repair coupling factor [Francisella tularensis subsp.
           novicida U112]
 gi|195536331|ref|ZP_03079338.1| transcription-repair coupling factor [Francisella tularensis subsp.
           novicida FTE]
 gi|118423536|gb|ABK89926.1| transcription-repair coupling factor [Francisella novicida U112]
 gi|194372808|gb|EDX27519.1| transcription-repair coupling factor [Francisella tularensis subsp.
           novicida FTE]
          Length = 1141

 Score =  236 bits (602), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +   + P+  T  Q SAI D+ +DM     M R++ GDVG GKT +A+ A   A +   Q
Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQ 648

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             I+ P  ILAQQHY   K    NT + +E+IT +     +++  E +  G   IIIGTH
Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFEDLKKGTVDIIIGTH 708

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L    I +  L L+I+DE+HRFGV Q+ KL        +L M+ATPIPR+L +      
Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768

Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499
           D+S I   PA R  +KT +     N I E + R  +    G + +++  ++E  +KK+  
Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            + +  R           IAI HG+MS+ + + VM  FK+    +L+ TT+IE GID+ +
Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616
           A+ +IIE+A + GLAQLHQLRGRVGR    +   +L      ++K++  RL  + NTE  
Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEASITKDALKRLEAISNTESL 936

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GEILG +QSG
Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962


>gi|332678337|gb|AEE87466.1| Transcription-repair coupling factor [Francisella cf. novicida Fx1]
          Length = 1141

 Score =  236 bits (602), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +   + P+  T  Q SAI D+ +DM     M R++ GDVG GKT +A+ A   A +   Q
Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQ 648

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             I+ P  ILAQQHY   K    NT + +E+IT +     +++  E +  G   IIIGTH
Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFEDLKKGTVDIIIGTH 708

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L    I +  L L+I+DE+HRFGV Q+ KL        +L M+ATPIPR+L +      
Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768

Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499
           D+S I   PA R  +KT +     N I E + R  +    G + +++  ++E  +KK+  
Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            + +  R           IAI HG+MS+ + + VM  FK+    +L+ TT+IE GID+ +
Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616
           A+ +IIE+A + GLAQLHQLRGRVGR    +   +L      ++K++  RL  + NTE  
Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEASITKDALKRLEAISNTESL 936

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GEILG +QSG
Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962


>gi|330808512|ref|YP_004352974.1| transcription-repair coupling factor [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376620|gb|AEA67970.1| Transcription-repair coupling factor [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1149

 Score =  236 bits (602), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 146/380 (38%), Positives = 212/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 598 GFPFEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAIL 657

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 658 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQ 717

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +++  L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 718 DDVKFKSLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 777

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   V E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 778 IATPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 836

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 837 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 887

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 888 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVL 947

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 948 ATNDLEIRGAGELLGDGQSG 967


>gi|261253317|ref|ZP_05945890.1| transcription-repair coupling factor [Vibrio orientalis CIP 102891]
 gi|260936708|gb|EEX92697.1| transcription-repair coupling factor [Vibrio orientalis CIP 102891]
          Length = 1153

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 215/382 (56%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  ++ DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 599 GFPFEETDDQSMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  L+ I  G+  +++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKLVLQDIEEGKVDLVVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 NDIKFKDLGLLIVDEEHRFGVRQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  IKT    + + D+ + R  V+  +  G + Y++  Q+E  EK  ++   +
Sbjct: 779 IATPPARRLAIKTF---VRQSDDAVVREAVLREIMRGGQVYFLHNQVETIEKVAADLEKL 835

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V           + + + HG+M + + E +M+ F +    LL+ TT+IE GIDV  A+ I
Sbjct: 836 VPE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTI 886

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618
           I++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF
Sbjct: 887 IMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGF 946

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 947 TLATHDLEIRGAGELLGDEQSG 968


>gi|25084218|gb|AAN72199.1| putative helicase [Arabidopsis thaliana]
          Length = 822

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 143/381 (37%), Positives = 222/381 (58%), Gaps = 17/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             P++ T  Q+ A  D+ +D++++   M R++ GDVG GKT VAL A+   V  G QA++
Sbjct: 264 QFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSTGKQAMV 323

Query: 327 MAPIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +AP  +LA+QHY+ I ++++    I V +++    +A + + LE I  G  +II+GTH+L
Sbjct: 324 LAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTGHLNIIVGTHSL 383

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               + Y  L L++VDE+ RFGV+Q+ K+    T+  VL ++ATPIPRTL L   G  D 
Sbjct: 384 LGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDA 443

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I+  P  R PIKT +    R ++VIE +K  L  G + +++ P+I        + + E
Sbjct: 444 SLISTPPPERIPIKTHLSSF-RKEKVIEAIKNELDRGGQVFYVLPRI--------KGLEE 494

Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             + L E F    IA+ HG+      E  M+ F  G  K+LI T ++E G+D+ +A+ II
Sbjct: 495 VMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTII 554

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619
           I++ + FGLAQL+QLRGRVGR ++ +   L Y     LS  +  RLS L+   +   GF 
Sbjct: 555 IQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQ 614

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +AE+D+  R  G I G +Q+G
Sbjct: 615 LAEKDMGIRGFGTIFGEQQTG 635


>gi|330967943|gb|EGH68203.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 1150

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 146/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 599 GFPFEETPDQQTTIEAVRADMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVANLAEGKIDIVIGTHKLLQ 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + D E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 838 E---------ARIGIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITSDAEKRLEAIANTQDLGAGFVL 948

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968


>gi|330878592|gb|EGH12741.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 1150

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 146/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 599 GFPFEETPDQQTTIEAVRADMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVANLAEGKIDIVIGTHKLLQ 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + D E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 838 E---------ARIGIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITSDAEKRLEAIANTQDLGAGFVL 948

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968


>gi|296875514|ref|ZP_06899586.1| transcription-repair coupling factor [Streptococcus parasanguinis
            ATCC 15912]
 gi|296433438|gb|EFH19213.1| transcription-repair coupling factor [Streptococcus parasanguinis
            ATCC 15912]
          Length = 1167

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/411 (35%), Positives = 230/411 (55%), Gaps = 27/411 (6%)

Query: 267  RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            ++ P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q  +
Sbjct: 606  QDFPYIETDDQLRSIEEIKKDMESNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAV 665

Query: 327  MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            + P  +LAQQHY   K+  ++  + V +++    +A +++ LE++  G+  IIIGTH L 
Sbjct: 666  LVPTTVLAQQHYANFKERFESFAVEVAVLSRFQSKAEQKETLEKLKKGRVDIIIGTHRLL 725

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
               + +  L L+++DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S
Sbjct: 726  SKDVVFSDLGLIVIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLS 785

Query: 447  KITEKPAGRKPIKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIE--EKKESNFR 501
             I   P  R P++T ++  N     D V+      +  G +AY++  +++  E+K S  +
Sbjct: 786  VIETPPTNRYPVQTFVLETNPTIIRDAVLRE----MDRGGQAYYLYNKVDTIEQKVSELK 841

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             ++           +SI  +HG+MS++  E+ +  F NG   +L+ TT+IE G+D+ +A+
Sbjct: 842  ELIPE---------ASIGFVHGQMSEVRLENTLLDFINGEYDVLVTTTIIETGVDIPNAN 892

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--D 616
             + IENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   
Sbjct: 893  TLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKSLTEVSEKRLEAIKGFTELGS 952

Query: 617  GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKH 665
            GF IA  DL  R  G ILG  QSG    +    E++  LLE  IA+K  + 
Sbjct: 953  GFKIAMRDLSIRGAGNILGASQSGFIDSV--GFEMYSQLLEEAIAKKQGQE 1001


>gi|13877639|gb|AAK43897.1|AF370520_1 putative helicase [Arabidopsis thaliana]
          Length = 823

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 143/381 (37%), Positives = 222/381 (58%), Gaps = 17/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             P++ T  Q+ A  D+ +D++++   M R++ GDVG GKT VAL A+   V  G QA++
Sbjct: 265 QFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSTGKQAMV 324

Query: 327 MAPIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +AP  +LA+QHY+ I ++++    I V +++    +A + + LE I  G  +II+GTH+L
Sbjct: 325 LAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTGHLNIIVGTHSL 384

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               + Y  L L++VDE+ RFGV+Q+ K+    T+  VL ++ATPIPRTL L   G  D 
Sbjct: 385 LGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDA 444

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I+  P  R PIKT +    R ++VIE +K  L  G + +++ P+I        + + E
Sbjct: 445 SLISTPPPERIPIKTHLSSF-RKEKVIEAIKNELDRGGQVFYVLPRI--------KGLEE 495

Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             + L E F    IA+ HG+      E  M+ F  G  K+LI T ++E G+D+ +A+ II
Sbjct: 496 VMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTII 555

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619
           I++ + FGLAQL+QLRGRVGR ++ +   L Y     LS  +  RLS L+   +   GF 
Sbjct: 556 IQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQ 615

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +AE+D+  R  G I G +Q+G
Sbjct: 616 LAEKDMGIRGFGTIFGEQQTG 636


>gi|188491808|ref|ZP_02999078.1| transcription-repair coupling factor [Escherichia coli 53638]
 gi|188487007|gb|EDU62110.1| transcription-repair coupling factor [Escherichia coli 53638]
          Length = 1148

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQCDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|315634772|ref|ZP_07890054.1| transcription-repair coupling factor [Aggregatibacter segnis ATCC
           33393]
 gi|315476324|gb|EFU67074.1| transcription-repair coupling factor [Aggregatibacter segnis ATCC
           33393]
          Length = 1149

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 146/409 (35%), Positives = 233/409 (56%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  Q  AI  ++ DM+    M R++ 
Sbjct: 570 LLDVYAQREAQKGFAFQYDREEFQQFTATFPFEETHDQLMAINAVISDMTLPKAMDRLVC 629

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++  K    N  + VE+++   
Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHFDNFKDRFANLPVNVEMLSRFK 689

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ ++ +A G+  I+IGTH + Q  +Q++ L L+I+DE+HRFGV+Q+ K+ Q   
Sbjct: 690 TAKEQKQVIQDLADGKVDILIGTHKIIQGDVQFHDLGLLIIDEEHRFGVRQKEKMKQLRA 749

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + DE++ R + +L
Sbjct: 750 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLTIKTF---VRQTDELVIR-EAIL 805

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 806 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 858

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A++FGLAQLHQLRGRVGR    +   LL 
Sbjct: 859 FYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQAYAYLLT 918

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L++ ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 919 PPPKLMTKDAKKRLEALESLDNLGAGFILATHDLEIRGAGELLGNEQSG 967


>gi|331657177|ref|ZP_08358139.1| transcription-repair coupling factor [Escherichia coli TA206]
 gi|331055425|gb|EGI27434.1| transcription-repair coupling factor [Escherichia coli TA206]
          Length = 736

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 179 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 238

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 239 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 298

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 299 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 358

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 359 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 409

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 410 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 467

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 468 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 527

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 528 GAGFALATHDLEIRGAGELLGEEQSG 553


>gi|191639457|ref|YP_001988623.1| Transcription-repair coupling factor (TRCF) [Lactobacillus casei
           BL23]
 gi|190713759|emb|CAQ67765.1| Transcription-repair coupling factor (TRCF) [Lactobacillus casei
           BL23]
 gi|205270976|emb|CAP07849.1| transcriptional-repair coupling factor [Lactobacillus casei BL23]
 gi|327383550|gb|AEA55026.1| Transcription-repair coupling factor [Lactobacillus casei LC2W]
 gi|327386742|gb|AEA58216.1| Transcription-repair coupling factor [Lactobacillus casei BD-II]
          Length = 1174

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 239/431 (55%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  A  E +A ++  L  +++ +K  G     +  +  K     P+  T  Q 
Sbjct: 567 EWQKTKRKVAARIEDIADELIDLYAKREAEK--GFAFGPDDDLQHKFEAEFPYPETPDQL 624

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + K+I  DM +   M R+L GDVG GKT VAL A   A++ G QA I+ P  ILAQQH+
Sbjct: 625 RSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHF 684

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +K+   +  I V +++        ++ ++ + +G   I++GTH L    + +  L L+
Sbjct: 685 DTMKERFADFPIKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + ++ Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 745 VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 804

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           +T ++  N   I E IER    +  G + +++  ++E+         +ER  S  E    
Sbjct: 805 QTFVMEQNPGVIREAIER---EMERGGQVFYLHNRVED---------MERTVSQLEELVP 852

Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            +S+   HG+M++   E+V+  F +G   +L+ TT+IE G+D+ +A+ +IIENA+H+GL+
Sbjct: 853 DASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLS 912

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+QLRGR+GR   ++    +Y P   L++ +  RL  +KN TE   GF IA  DL  R 
Sbjct: 913 QLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKNFTELGSGFKIAMRDLSIRG 972

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 973 AGNLLGKQQHG 983


>gi|15801231|ref|NP_287248.1| transcription-repair coupling factor [Escherichia coli O157:H7
           EDL933]
 gi|12514664|gb|AAG55860.1|AE005321_3 transcription-repair coupling factor; mutation frequency decline
           [Escherichia coli O157:H7 str. EDL933]
          Length = 1148

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMXQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|322390530|ref|ZP_08064048.1| transcription-repair coupling factor [Streptococcus parasanguinis
            ATCC 903]
 gi|321142804|gb|EFX38264.1| transcription-repair coupling factor [Streptococcus parasanguinis
            ATCC 903]
          Length = 1164

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/411 (35%), Positives = 230/411 (55%), Gaps = 27/411 (6%)

Query: 267  RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            ++ P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q  +
Sbjct: 606  QDFPYIETDDQLRSIEEIKKDMESNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAV 665

Query: 327  MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            + P  +LAQQHY   K+  ++  + V +++    +A +++ LE++  G+  IIIGTH L 
Sbjct: 666  LVPTTVLAQQHYANFKERFESFAVEVAVLSRFQSKAEQKETLEKLKKGRVDIIIGTHRLL 725

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
               + +  L L+++DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S
Sbjct: 726  SKDVVFSDLGLIVIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLS 785

Query: 447  KITEKPAGRKPIKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIE--EKKESNFR 501
             I   P  R P++T ++  N     D V+      +  G +AY++  +++  E+K S  +
Sbjct: 786  VIETPPTNRYPVQTFVLETNPTIIRDAVLRE----MDRGGQAYYLYNKVDTIEQKVSELK 841

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             ++           +SI  +HG+MS++  E+ +  F NG   +L+ TT+IE G+D+ +A+
Sbjct: 842  ELIPE---------ASIGFVHGQMSEVRLENTLLDFINGEYDVLVTTTIIETGVDIPNAN 892

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--D 616
             + IENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   
Sbjct: 893  TLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKSLTEVSEKRLEAIKGFTELGS 952

Query: 617  GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKH 665
            GF IA  DL  R  G ILG  QSG    +    E++  LLE  IA+K  + 
Sbjct: 953  GFKIAMRDLSIRGAGNILGASQSGFIDSV--GFEMYSQLLEEAIAKKQGQE 1001


>gi|213967358|ref|ZP_03395506.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato T1]
 gi|301381676|ref|ZP_07230094.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058434|ref|ZP_07249975.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato K40]
 gi|302131161|ref|ZP_07257151.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213927659|gb|EEB61206.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato T1]
 gi|331019538|gb|EGH99594.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 1150

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 146/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 599 GFPFEETPDQQTTIEAVRADMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVANLAEGKIDIVIGTHKLLQ 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + D E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 838 E---------ARIGIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITSDAEKRLEAIANTQDLGAGFVL 948

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968


>gi|333008322|gb|EGK27796.1| transcription-repair coupling factor [Shigella flexneri K-272]
 gi|333019810|gb|EGK39082.1| transcription-repair coupling factor [Shigella flexneri K-227]
          Length = 1148

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV  + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVLHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|28869305|ref|NP_791924.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852546|gb|AAO55619.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 1150

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 146/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 599 GFPFEETPDQQTTIEAVRADMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVANLAEGKIDIVIGTHKLLQ 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + D E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 838 E---------ARIGIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITSDAEKRLEAIANTQDLGAGFVL 948

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968


>gi|171911105|ref|ZP_02926575.1| ATP-dependent DNA helicase RecG [Verrucomicrobium spinosum DSM
           4136]
          Length = 903

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 127/299 (42%), Positives = 184/299 (61%), Gaps = 4/299 (1%)

Query: 378 IIIGTHALF--QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           I+IGTHAL   + +    +L LV++DEQH+FGV QR +L  +  AP VL+MTATPIPRTL
Sbjct: 583 IVIGTHALLYERSAGNLPRLGLVVIDEQHKFGVAQRARLIAQGEAPDVLVMTATPIPRTL 642

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            LT  GD+D+S I ++P  R  I T +  + +++EV + +   L EG++ Y + P IEE 
Sbjct: 643 TLTLYGDLDVSTIDQRPKERGKIITAVREVTKVEEVTKFVLTRLEEGRQCYIVYPLIEES 702

Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           ++ +  +         +     +  ++HGRM    KE+VM  F+ G+ K+L++TTVIEVG
Sbjct: 703 EKLDAGAATTGLEEWTKRLAPHATGLLHGRMDTEAKEAVMRQFREGSVKVLVSTTVIEVG 762

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +A+++II ++  FGLAQLHQLRGR+GRG   S  I L+ P   K +  RL +L+ T
Sbjct: 763 VDVPNATVMIIHDSGRFGLAQLHQLRGRIGRGAHTSYAI-LFVPKGDKEAMARLKLLEET 821

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            DGF IAEEDL +R  G++LG  QSG              L+  AR+ A+  L  DP+L
Sbjct: 822 TDGFKIAEEDLARRGPGDVLGSAQSGQSPLRFGSLLADTRLVTTARRLAERTLKGDPEL 880



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 139/269 (51%), Gaps = 16/269 (5%)

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEA 158
           ++TL +F      L+ V     ++ V GKIK++K+R++M HP Y I     D +   I A
Sbjct: 101 QLTLRWF--GMVYLQKVLAVDMELMVYGKIKEIKDRLLMDHPEYEILRGDDDDDEAGIHA 158

Query: 159 -----VYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSI--AEAFNII 209
                VY L  GL     ++   + +  LP   LP+ + +       F  +  A A   +
Sbjct: 159 SRIVPVYRLRGGLKQKPLRRTTWQVMEHLPAVALPDILPRPK-AGGDFAGMTRATALRTL 217

Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
           H+P   + F+  + ++  LA +E    Q+  +  + QFK   G     EG++    L  +
Sbjct: 218 HHP---EGFDELTKSQRYLALEEFYLMQLRAVRRKLQFKHHGGTAQRAEGRLLTAFLETL 274

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T +Q  ++++IL DM+    M R+L GDVGSGKT+VAL AM  AVEAG Q  +MAP
Sbjct: 275 PFQMTGAQSRSLEEILADMALPQPMNRLLHGDVGSGKTVVALAAMLMAVEAGRQGALMAP 334

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGN 358
             ILA+QHYE  +++ +   I V + T +
Sbjct: 335 TQILAEQHYENARRWLEPLGIRVALRTAD 363


>gi|253989203|ref|YP_003040559.1| transcription-repair coupling factor [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253780653|emb|CAQ83815.1| transcription-repair coupling factor (trcf) [Photorhabdus
           asymbiotica]
          Length = 1148

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 221/386 (57%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   ++ PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ +   A++   
Sbjct: 590 QLFCQSFPFETTPDQEQAINAVLDDMCQPIAMDRLVCGDVGFGKTEVAMRSAFLAIQNNK 649

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    N  + +E+I+       +++ +E  A G+  IIIGT
Sbjct: 650 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMISRFRSAKEQQQVVEMAAVGKVDIIIGT 709

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q ++++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +     
Sbjct: 710 HKLLQSNLRWKDLGLLIVDEEHRFGVRHKEQIKAMRADVDILTLTATPIPRTLNMAMSSM 769

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I+  PA R  +KT    +   D ++ R + +L E   G + Y++   +E  +++ 
Sbjct: 770 RDLSIISTPPARRLAVKTF---VREYDSLVVR-EAMLREILRGGQVYYLYNDVENIEKAK 825

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R  +E+         + IAI HG+M + D E VM  F +    +LI TT+IE GID+  
Sbjct: 826 LR--LEKLVP-----EARIAIGHGQMRERDLERVMTDFHHQRFNVLICTTIIETGIDIPS 878

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ +++ RL  + + ED 
Sbjct: 879 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTADAHKRLEAIASLEDL 938

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 939 GAGFALATHDLEIRGAGELLGEEQSG 964


>gi|110805128|ref|YP_688648.1| transcription-repair coupling factor [Shigella flexneri 5 str.
           8401]
 gi|110614676|gb|ABF03343.1| transcription-repair coupling factor [Shigella flexneri 5 str.
           8401]
          Length = 1169

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 612 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 671

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 672 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 731

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+I DE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 732 HKLLQSDVKFKDLGLLIADEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 791

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 792 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 842

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 843 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 900

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 901 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 960

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 961 GAGFALATHDLEIRGAGELLGEEQSG 986


>gi|219872109|ref|YP_002476484.1| transcription-repair coupling factor [Haemophilus parasuis SH0165]
 gi|219692313|gb|ACL33536.1| transcription-repair coupling factor [Haemophilus parasuis SH0165]
          Length = 1217

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 158/426 (37%), Positives = 236/426 (55%), Gaps = 23/426 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
              PF  T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   A     Q  I+
Sbjct: 670  TFPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAAMNHKQVAIL 729

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            AP  +LAQQH+E  K    N  I VE+++       +++ L ++A G+  I++GTH L Q
Sbjct: 730  APTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKAQKEILAKVADGKVDILVGTHKLLQ 789

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
            + +Q+  L L+++DE+HRFGV+Q+ ++ Q      +L +TATPIPRTL +   G  D+S 
Sbjct: 790  EDVQFKDLGLLVIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMALNGMRDLSI 849

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVV 504
            I   PA R  IKT +   +  D VI+  + +L E   G + Y++   +     +   +  
Sbjct: 850  IASPPARRLSIKTFVRQSD--DTVIK--EAILREILRGGQVYYLHNDV-----ATIENTA 900

Query: 505  ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            ++   L     + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ II
Sbjct: 901  QQLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTII 958

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL---SVLKNTEDGFL 619
            IE A+ FGLAQLHQLRGRVGR    +   +L  PP  L+K++  RL   S + N   GF+
Sbjct: 959  IERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPPPKTLTKDAQQRLEAMSTIDNLGAGFV 1018

Query: 620  IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
            +A  DL+ R  GE+LG +QSG  + L     L+  LLE A K  +    ++P L  +  Q
Sbjct: 1019 LATHDLEIRGAGELLGSEQSGQIESLGF--SLYMELLENAVKALQE--GREPTLDEITQQ 1074

Query: 680  SIRILL 685
             + I L
Sbjct: 1075 QVDIEL 1080


>gi|170768251|ref|ZP_02902704.1| transcription-repair coupling factor [Escherichia albertii TW07627]
 gi|170123017|gb|EDS91948.1| transcription-repair coupling factor [Escherichia albertii TW07627]
          Length = 1148

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILTEVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  D + R  GE+LG +QSG
Sbjct: 940 GAGFALATHDQEIRGAGELLGEEQSG 965


>gi|212712824|ref|ZP_03320952.1| hypothetical protein PROVALCAL_03921 [Providencia alcalifaciens DSM
           30120]
 gi|212684516|gb|EEB44044.1| hypothetical protein PROVALCAL_03921 [Providencia alcalifaciens DSM
           30120]
          Length = 1148

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 148/411 (36%), Positives = 224/411 (54%), Gaps = 23/411 (5%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q+  +  PF  T  QE AI  +L DM Q   M R++ 
Sbjct: 567 LLDIYAQRAAKAGFAFKHDKEQYQEFCQGFPFETTPDQEMAINAVLSDMCQPLAMDRLVC 626

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   A+    Q  ++ P  +LAQQHY+  +    N  + +E+++   
Sbjct: 627 GDVGFGKTEVAMRAAFLAINNNKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFK 686

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ +   A G+  I+IGTH L Q  IQ+  L L++VDE+HRFGV+ + ++     
Sbjct: 687 TAKEQQQIIAEAAEGKVDILIGTHKLLQSDIQWKDLGLLVVDEEHRFGVRHKERIKAMRA 746

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    + + D+++ R + +L
Sbjct: 747 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VRQYDDLVVR-EAIL 802

Query: 480 SE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
            E   G + Y++   +E  EK ++   ++V           +   + HG+M + + E VM
Sbjct: 803 RETLRGGQVYYLYNDVENIEKAKARLETLVPE---------ARFVVGHGQMRERELERVM 853

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F +    +LI TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   L
Sbjct: 854 TDFHHQRFNVLICTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYL 913

Query: 595 LY-HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           L  HP  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 914 LTPHPKAMTTDAQKRLEAISSLEDLGAGFALATHDLEIRGAGELLGEDQSG 964


>gi|89256268|ref|YP_513630.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314722|ref|YP_763445.1| transcription-repair coupling factor TRCF [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156502334|ref|YP_001428399.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254367605|ref|ZP_04983626.1| transcription-repair coupling factor, ATP-dependent [Francisella
           tularensis subsp. holarctica 257]
 gi|89144099|emb|CAJ79356.1| Transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. holarctica LVS]
 gi|115129621|gb|ABI82808.1| transcription-repair coupling factor TRCF [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253416|gb|EBA52510.1| transcription-repair coupling factor, ATP-dependent [Francisella
           tularensis subsp. holarctica 257]
 gi|156252937|gb|ABU61443.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 1141

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +   + P+  T  Q SAI D+ +DM     M R++ GDVG GKT + + A   A +   Q
Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEITMRAAFLATQNQKQ 648

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             I+ P  ILAQQHY   K    NT I +E+IT +     +++  E +  G   IIIGTH
Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAINIEVITRSKTSKAQQQLFEDLKKGTVDIIIGTH 708

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L    I +  L L+I+DE+HRFGV Q+ KL        +L M+ATPIPR+L +      
Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768

Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499
           D+S I   PA R  +KT +     N I E + R  +    G + +++  ++E  +KK+  
Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            + +  R           IAI HG+MS+ + + VM  FK+    +L+ TT+IE GID+ +
Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616
           A+ +IIE+A + GLAQLHQLRGRVGR    +   +L      ++K++  RL  + NTE  
Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNKASITKDALKRLEAISNTESL 936

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GEILG +QSG
Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962


>gi|37526705|ref|NP_930049.1| transcription-repair coupling factor [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786137|emb|CAE15189.1| transcription-repair coupling factor (TRCF) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 1148

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 148/387 (38%), Positives = 218/387 (56%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   ++ PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ +   AV    
Sbjct: 590 QLFCQSFPFETTPDQEQAINAVLNDMCQPIAMDRLICGDVGFGKTEVAMRSAFLAVHNDK 649

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    N  + +E+I+       +++ +E  A G+  IIIGT
Sbjct: 650 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMISRFRSAKEQQQIVEMAAEGKVDIIIGT 709

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +     
Sbjct: 710 HKLLQSDLRWKDLGLLIVDEEHRFGVRHKEQIKAMRADVDILTLTATPIPRTLNMAMSSM 769

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I+  PA R  +KT    +   D ++ R + +L E   G + Y++   +E  +++ 
Sbjct: 770 RDLSIISTPPARRLAVKTF---VREYDSLLVR-EAILREVLRGGQVYYLYNDVENIEKAK 825

Query: 500 FRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            R        L E    + IAI HG+M + D E VM  F +    +LI TT+IE GID+ 
Sbjct: 826 LR--------LEELVPEARIAIGHGQMRERDLERVMTDFHHQRFNVLICTTIIETGIDIP 877

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED 616
            A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ +++ RL  + + ED
Sbjct: 878 SANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTTDAHKRLEAIASLED 937

Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSG 640
              GF +A  DL+ R  GE+LG +QSG
Sbjct: 938 LGAGFALATHDLEIRGAGELLGEEQSG 964


>gi|323496023|ref|ZP_08101086.1| transcription-repair coupling factor [Vibrio sinaloensis DSM 21326]
 gi|323318914|gb|EGA71862.1| transcription-repair coupling factor [Vibrio sinaloensis DSM 21326]
          Length = 1154

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 143/383 (37%), Positives = 218/383 (56%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q+ AI  ++ DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 599 GFPFEETDDQKIAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFLATDNGKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ I  G+  +++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKQVLQDIEDGKVDLVVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 NDIKFKDLGLLIVDEEHRFGVRQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT    + + D+ + R + VL E   G + Y++  Q++  EK  ++   
Sbjct: 779 IATPPARRLAIKTF---VRQSDDAVVR-EAVLREIMRGGQVYFLHNQVDTIEKVAADLEK 834

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           ++           + I + HG+M + + E +M+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 835 LIPE---------ARITVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANT 885

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617
           II++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   G
Sbjct: 886 IIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAG 945

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 946 FTLATHDLEIRGAGELLGDEQSG 968


>gi|315660330|ref|ZP_07913183.1| transcription-repair coupling factor [Staphylococcus lugdunensis
            M23590]
 gi|315494619|gb|EFU82961.1| transcription-repair coupling factor [Staphylococcus lugdunensis
            M23590]
          Length = 1173

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 159/446 (35%), Positives = 239/446 (53%), Gaps = 23/446 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            L+ + K+ +  +G     +    Q    + P+  T  Q  +I++I  DM  +  M R+L 
Sbjct: 587  LIALYKEREMSVGYQFGEDTAEQQAFELDFPYELTPDQAKSIEEIKADMELQKPMDRLLC 646

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV  G Q   + P  ILAQQHYE + +  Q+  + +++++   
Sbjct: 647  GDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLVSRFR 706

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                 RK  E +  G   I++GTH L    I+Y  L L+IVDE+ RFGV+ + ++    T
Sbjct: 707  TAKEVRKTKEGLKSGYVDIVVGTHKLLSKDIRYKDLGLLIVDEEQRFGVRHKERIKTLKT 766

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP--INRIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++    N I E +ER   
Sbjct: 767  NVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALER--- 823

Query: 478  VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDS 536
             LS   + +++  +++        S+ E+   L      +SIA+ HG+M++ D E  M S
Sbjct: 824  ELSRDGQVFYLYNKVQ--------SIYEKREQLQMLMPEASIAVAHGQMTERDLEETMLS 875

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F NG   +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+QLRGRVGR   I     L 
Sbjct: 876  FINGDYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFL- 934

Query: 597  HPP---LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            HP    L++ +  RL  +K  TE   GF IA  DL  R  G +LG +Q G    +    +
Sbjct: 935  HPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSV--GFD 992

Query: 651  LHDSLLEIARKDAKHILTQDPDLTSV 676
            L+  +LE A  + + I  + PD   V
Sbjct: 993  LYSQMLEEAVNEKRGITEETPDTPEV 1018


>gi|300716251|ref|YP_003741054.1| transcription-repair-coupling factor [Erwinia billingiae Eb661]
 gi|299062087|emb|CAX59203.1| Transcription-repair-coupling factor [Erwinia billingiae Eb661]
          Length = 1147

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 150/409 (36%), Positives = 223/409 (54%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q    + PF  T  Q  AI  +L DM Q   M R++ 
Sbjct: 568 LLDIYAQREAKSGFAFKHDREQYQLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+  +    N  + +E+++   
Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +   LE+   G+  I+IGTH L  + I++  L L+IVDE+HRFGV+ + ++     
Sbjct: 688 TAKEQTAILEQAREGKIDILIGTHKLLANEIKWRDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D+++ R + +L
Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREFDDLVVR-EAIL 803

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N      R + L     + +AI HG+M + + E VM+ 
Sbjct: 804 REVLRGGQVYYLYNDVE-----NIEKAANRLSELVPE--ARVAIGHGQMRERELERVMND 856

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   L+ 
Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLMT 916

Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            HP  ++ +++ RL  L + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 917 PHPKAMTSDAHKRLEALASLEDLGAGFALATHDLEIRGAGELLGEGQSG 965


>gi|294636793|ref|ZP_06715130.1| transcription-repair coupling factor [Edwardsiella tarda ATCC
           23685]
 gi|291089984|gb|EFE22545.1| transcription-repair coupling factor [Edwardsiella tarda ATCC
           23685]
          Length = 847

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +  PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    
Sbjct: 291 QLFCQGFPFETTPDQEMAINAVLGDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVHNSK 350

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L   A G+  I+IGT
Sbjct: 351 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIELISRFRSAKEQAQVLADTAEGKVDILIGT 410

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  + +  L L+IVDE+HRFGV+Q+ ++        +L +TATPIPRTL +   G 
Sbjct: 411 HKLLQTDVLWKDLGLLIVDEEHRFGVRQKERIKALRADVDILTLTATPIPRTLNMAMSGM 470

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   ++     +
Sbjct: 471 RDLSIIATPPARRMAVKTF---VREYDSLLVR-EAILRETLRGGQVYYLYNDVD-----S 521

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   +R  +L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 522 IQKAADRLATLVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPS 579

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  PP  ++ ++  RL  + + ED 
Sbjct: 580 ANTIIIERADHFGLAQLHQLRGRVGRSYHQAYAYLLTPPPKAMTVDAQKRLEAIASLEDL 639

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 640 GAGFALATHDLEIRGAGELLGDDQSG 665


>gi|157150453|ref|YP_001451365.1| transcription-repair coupling factor [Streptococcus gordonii str.
            Challis substr. CH1]
 gi|157075247|gb|ABV09930.1| transcription-repair coupling factor [Streptococcus gordonii str.
            Challis substr. CH1]
          Length = 1167

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 151/409 (36%), Positives = 231/409 (56%), Gaps = 25/409 (6%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T+ Q  +I++I +DM  K  M R+L GDVG GKT VA+ A   AV    Q  I+
Sbjct: 611  DFPYVETEDQLRSIQEIKKDMESKQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAIL 670

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +LAQQHY   K+   +  + V++++    +A + + LE +  GQ  IIIGTH L  
Sbjct: 671  VPTTVLAQQHYTNFKERFNDFAVNVDVLSRFRTKAEQSETLEALKKGQVDIIIGTHRLLS 730

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              +++  L L+++DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S 
Sbjct: 731  QDVEFADLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSV 790

Query: 448  ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503
            I   P  R P++T ++  N   I + I R    +  G + Y++  +++  E+K +  + +
Sbjct: 791  IETPPTNRYPVQTYVLESNPTIIRDAILR---EIDRGGQVYYLYNKVDTIEQKVAELKEL 847

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +           +SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ +
Sbjct: 848  IPE---------ASIGFVHGQMSEIRLENTLIDFINGEYDVLVTTTIIETGVDIPNANTL 898

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGF 618
             IENA+H GL+ L+QLRGRVGR   I+    +Y P   L++ +  RL  +K  TE   GF
Sbjct: 899  FIENADHMGLSTLYQLRGRVGRSNRIAYAYFMYRPDKTLTEVAEKRLEAIKGFTELGSGF 958

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKH 665
             IA  DL  R  G ILG  QSG    +    E++  LLE  IA+K  K 
Sbjct: 959  KIAMRDLSIRGAGNILGASQSGFIDSV--GFEMYSQLLEEAIAKKQGKE 1005


>gi|110833889|ref|YP_692748.1| transcription-repair coupling factor [Alcanivorax borkumensis SK2]
 gi|110647000|emb|CAL16476.1| transcription-repair coupling factor [Alcanivorax borkumensis SK2]
          Length = 1159

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 141/381 (37%), Positives = 215/381 (56%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++
Sbjct: 602 SFPFEETPDQQAAIASVVADMQSSQPMDRLVCGDVGFGKTEVAMRAAFVAVENQTQVAVL 661

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHYE       +  + +E+++       + + L+R+  G+  I++GTH L Q
Sbjct: 662 VPTTLLAQQHYESFTDRFADWPVNIEVLSRFRSAKEKTQVLQRLKEGKVDILVGTHQLLQ 721

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           +++ +  L L+IVDE+HRFGV+ + +L Q      +L +TATPIPRTL +   G  DIS 
Sbjct: 722 ETVSFDNLGLIIVDEEHRFGVRHKERLKQMRAECDILTLTATPIPRTLNMAMSGMRDISI 781

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
           I   P  R  +KT +   N  D VI E L   L  G + Y++   I+  EK  ++ R +V
Sbjct: 782 IATPPQKRLSVKTFVQQHN--DTVIKEALLRELLRGGQVYYLHNDIDTMEKTAADIRKLV 839

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + + I HG+M + + E+VM  F +    +L++TT+IE GIDV  A+ II
Sbjct: 840 P---------DARVGIAHGQMRERELEAVMSDFYHRRFNVLVSTTIIETGIDVPSANTII 890

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619
           I+ A+  GLAQLHQLRGRVGR    +   L+   P  ++K++  RL  ++   D   GF+
Sbjct: 891 IDRADKLGLAQLHQLRGRVGRSHHQAYAYLITPSPKVMTKDAIKRLEAIEQATDLGAGFM 950

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A +D++ R  GE+LG +Q G
Sbjct: 951 LASQDMEIRGAGELLGEEQHG 971


>gi|290953610|ref|ZP_06558231.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313111|ref|ZP_06803801.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 1141

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +   + P+  T  Q SAI D+ +DM     M R++ GDVG GKT + + A   A +   Q
Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEITMRAAFLATQNQKQ 648

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             I+ P  ILAQQHY   K    NT I +E+IT +     +++  E +  G   IIIGTH
Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAINIEVITRSKTSKAQQQLFEDLKKGTVDIIIGTH 708

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L    I +  L L+I+DE+HRFGV Q+ KL        +L M+ATPIPR+L +      
Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768

Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499
           D+S I   PA R  +KT +     N I E + R  +    G + +++  ++E  +KK+  
Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            + +  R           IAI HG+MS+ + + VM  FK+    +L+ TT+IE GID+ +
Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616
           A+ +IIE+A + GLAQLHQLRGRVGR    +   +L      ++K++  RL  + NTE  
Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNKASITKDALKRLEAISNTESL 936

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GEILG +QSG
Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962


>gi|289551698|ref|YP_003472602.1| Transcription-repair coupling factor [Staphylococcus lugdunensis
            HKU09-01]
 gi|289181229|gb|ADC88474.1| Transcription-repair coupling factor [Staphylococcus lugdunensis
            HKU09-01]
          Length = 1173

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 159/446 (35%), Positives = 239/446 (53%), Gaps = 23/446 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            L+ + K+ +  +G     +    Q    + P+  T  Q  +I++I  DM  +  M R+L 
Sbjct: 587  LIALYKEREMSVGYQFGEDTAEQQAFELDFPYELTPDQAKSIEEIKADMELQKPMDRLLC 646

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV  G Q   + P  ILAQQHYE + +  Q+  + +++++   
Sbjct: 647  GDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLVSRFR 706

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                 RK  E +  G   I++GTH L    I+Y  L L+IVDE+ RFGV+ + ++    T
Sbjct: 707  TAKEVRKTKEGLKSGYVDIVVGTHKLLSKDIRYKDLGLLIVDEEQRFGVRHKERIKTLKT 766

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP--INRIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++    N I E +ER   
Sbjct: 767  NVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALER--- 823

Query: 478  VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDS 536
             LS   + +++  +++        S+ E+   L      +SIA+ HG+M++ D E  M S
Sbjct: 824  ELSRDGQVFYLYNKVQ--------SIYEKREQLQMLMPEASIAVAHGQMTERDLEETMLS 875

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F NG   +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+QLRGRVGR   I     L 
Sbjct: 876  FINGDYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFL- 934

Query: 597  HPP---LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            HP    L++ +  RL  +K  TE   GF IA  DL  R  G +LG +Q G    +    +
Sbjct: 935  HPTNKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSV--GFD 992

Query: 651  LHDSLLEIARKDAKHILTQDPDLTSV 676
            L+  +LE A  + + I  + PD   V
Sbjct: 993  LYSQMLEEAVNEKRGITEETPDTPEV 1018


>gi|92113691|ref|YP_573619.1| transcription-repair coupling factor [Chromohalobacter salexigens
           DSM 3043]
 gi|91796781|gb|ABE58920.1| transcription-repair coupling factor [Chromohalobacter salexigens
           DSM 3043]
          Length = 1150

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 143/380 (37%), Positives = 217/380 (57%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q +AI+ ++ DM+    M R++ GDVG GKT VA+ A   AVE+G Q V++
Sbjct: 597 SFPFEETPDQHAAIEAVIGDMTAARPMDRVVCGDVGFGKTEVAMRAAFLAVESGRQVVVL 656

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY+  +    +T + +E+I+       ++ +LERI  G+A I+IGTH L  
Sbjct: 657 VPTTLLAQQHYDNFRDRFADTAVQIELISRFTAGKGQQASLERITEGRADIVIGTHKLLS 716

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
            S+    + L+I+DE+HRFGV Q+ KL        +L +TATPIPRTL +   G  D+S 
Sbjct: 717 KSMSLPNMGLLIIDEEHRFGVSQKEKLKGLRAEIDILTLTATPIPRTLNMAMSGIRDLSI 776

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   PA R  +KT +   N   + E +  L+ +L  G + Y++  +++        +   
Sbjct: 777 IATPPARRLSVKTFVQQRNEGVLKEAL--LREIL-RGGQVYFLHNEVK-----TIDATAA 828

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +   L     + + I HG++ + + E VM  F +    +L+ +T+IE GIDV  A+ III
Sbjct: 829 KITELVP--DARVGIAHGQLPERELERVMSDFYHKRFNVLVCSTIIETGIDVPSANTIII 886

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  PP  +++++  RL  +   ED   GF +
Sbjct: 887 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAMTRDALKRLEAIGQAEDLGAGFTL 946

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  D++ R  GE+LG +QSG
Sbjct: 947 ASHDMEIRGAGELLGDEQSG 966


>gi|153213092|ref|ZP_01948630.1| transcription-repair coupling factor [Vibrio cholerae 1587]
 gi|124116139|gb|EAY34959.1| transcription-repair coupling factor [Vibrio cholerae 1587]
          Length = 1155

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/383 (38%), Positives = 213/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 601 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ +A G+  I++GTH L  
Sbjct: 661 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 720

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 721 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 781 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 836

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 837 LVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL   P  ++K++  RL  + + ED   G
Sbjct: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPTPKAITKDAVKRLEAIASLEDLGAG 947

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 948 FTLATHDLEIRGAGELLGEEQSG 970


>gi|320155796|ref|YP_004188175.1| transcription-repair coupling factor [Vibrio vulnificus MO6-24/O]
 gi|319931108|gb|ADV85972.1| transcription-repair coupling factor [Vibrio vulnificus MO6-24/O]
          Length = 1153

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 143/380 (37%), Positives = 212/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A +   Q  ++
Sbjct: 599 GFPFEETDDQSMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNDKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ +E +A+G+  I++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQIMEDVANGKVDILVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 SDLKFSDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   PA R  IKT    +   D+ + R  ++  +  G + Y++  Q+E         V E
Sbjct: 779 IATPPARRLAIKTF---VRESDDAVVREAILREIMRGGQVYFLHNQVE-----TIEKVAE 830

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
               L     + + I HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II+
Sbjct: 831 DLTKLVPE--ARVTIAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIM 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFLI 620
           + A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF +
Sbjct: 889 DRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKSMTKDAIKRLDAIASLEDLGAGFTL 948

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG +QSG
Sbjct: 949 ATHDLEIRGAGELLGDEQSG 968


>gi|153835235|ref|ZP_01987902.1| transcription-repair coupling factor [Vibrio harveyi HY01]
 gi|148868273|gb|EDL67407.1| transcription-repair coupling factor [Vibrio harveyi HY01]
          Length = 1153

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 145/383 (37%), Positives = 215/383 (56%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI  +L DM Q   M R++ GDVG GKT VA+ A   A +   Q  ++
Sbjct: 599 TFPFEETDDQSTAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  L+ +A G+  I++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +    R D V+   + VL E   G + Y++  Q+E  EK   + + 
Sbjct: 779 IATPPARRLAIKTFV--RQREDSVVR--EAVLREIMRGGQVYFLHNQVETIEKTAEDLQK 834

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           ++           + + + HG+M + + E +M+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 835 LIPE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANT 885

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617
           II++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   G
Sbjct: 886 IIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAG 945

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 946 FTLATHDLEIRGAGELLGDEQSG 968


>gi|258625932|ref|ZP_05720803.1| transcription-repair coupling factor [Vibrio mimicus VM603]
 gi|258581797|gb|EEW06675.1| transcription-repair coupling factor [Vibrio mimicus VM603]
          Length = 872

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/383 (38%), Positives = 213/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 317 TFPFEETDDQAMAINAVLSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 376

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L+ +A G+  I++GTH L  
Sbjct: 377 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 436

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 437 SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 496

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 497 IATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAADLEK 552

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + + + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 553 LVPE---------ARVTVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 603

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++   L  + + ED   G
Sbjct: 604 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKHLEAIASLEDLGAG 663

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 664 FTLATHDLEIRGAGELLGEEQSG 686


>gi|183599469|ref|ZP_02960962.1| hypothetical protein PROSTU_02948 [Providencia stuartii ATCC 25827]
 gi|188021716|gb|EDU59756.1| hypothetical protein PROSTU_02948 [Providencia stuartii ATCC 25827]
          Length = 1148

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 143/388 (36%), Positives = 216/388 (55%), Gaps = 23/388 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+  +  PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   A+    
Sbjct: 590 QEFCQGFPFETTPDQEQAINAVLSDMCQPIAMDRLVCGDVGFGKTEVAMRAAFLAINNNK 649

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    N  + +E+++       +++ LE  A G+  I+IGT
Sbjct: 650 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFKTAKEQQQILEETAQGKVDILIGT 709

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  + ++ L L++VDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 710 HKLLQSDLVWHDLGLLVVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 769

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKE 497
            D+S I   PA R  +KT    + + D+++ R + +L E   G + Y++   +E  EK +
Sbjct: 770 RDLSIIATPPARRLAVKTF---VRQYDDLVVR-EAILRETLRGGQVYYLYNDVENIEKAK 825

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                +V           +   + HG+M + + E VM  F +    +LI TT+IE GID+
Sbjct: 826 KRLEELVPE---------ARFVVGHGQMRERELERVMTDFHHQRFNVLICTTIIETGIDI 876

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTE 615
             A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ +++ RL  + + E
Sbjct: 877 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTADAHKRLEAISSLE 936

Query: 616 D---GFLIAEEDLKQRKEGEILGIKQSG 640
           D   GF +A  DL+ R  GE+LG  QSG
Sbjct: 937 DLGAGFALATHDLEIRGAGELLGEDQSG 964


>gi|168467175|ref|ZP_02701017.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195630325|gb|EDX48951.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 1148

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++ + L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKLHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|157146181|ref|YP_001453500.1| transcription-repair coupling factor [Citrobacter koseri ATCC
           BAA-895]
 gi|157083386|gb|ABV13064.1| hypothetical protein CKO_01937 [Citrobacter koseri ATCC BAA-895]
          Length = 1148

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    N  + +E+++       + + LE++A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKLKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREVLRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   +R   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAADRLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965


>gi|187931883|ref|YP_001891868.1| transcription-repair coupling factor [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712792|gb|ACD31089.1| transcription-repair coupling factor [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 1141

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +   + P+  T  Q SAI D+ +DM     M R++ GDVG GKT +A+ A   A +   Q
Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQ 648

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             I+ P  ILAQQHY   K    NT + +E+IT +     +++  E +  G   IIIGTH
Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFEDLKKGTIDIIIGTH 708

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L    I +  L L+I+DE+HRFGV Q+ KL        +L M+ATPIPR+L +      
Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768

Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499
           D+S I   PA R  +KT +     N I E + R  +    G + +++  ++E  +KK+  
Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            + +  R           IAI HG+MS+ + + VM  FK+    +L+ TT+IE GID+ +
Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616
           A+ +IIE+A + GLAQLHQLRGRVGR    +   +L      ++K++  RL  + NTE  
Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEASITKDALKRLEAISNTESL 936

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GEILG +QSG
Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962


>gi|171778202|ref|ZP_02919431.1| hypothetical protein STRINF_00270 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
 gi|171283026|gb|EDT48450.1| hypothetical protein STRINF_00270 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
          Length = 1169

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 164/469 (34%), Positives = 255/469 (54%), Gaps = 33/469 (7%)

Query: 207  NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
            N +++ R  K  +  S   E +A D+LL     L   R Q K   G   + +  + ++  
Sbjct: 558  NKLNDGRFQKTKQKVSKQVEDIA-DDLLK----LYAERSQLK---GFAFSPDDDLQKEFD 609

Query: 267  RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             +  +  T+ Q  +IK+I  DM ++  M R+L GDVG GKT VA+ A   AV+   Q  +
Sbjct: 610  DDFAYVETEDQLRSIKEIKHDMEEEKPMDRLLVGDVGFGKTEVAMRAAFKAVKDHKQVAV 669

Query: 327  MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            + P  +LAQQH+    +  +N  + V++++    +  +   LE++  GQ  IIIGTH L 
Sbjct: 670  LVPTTVLAQQHFTNFSERFENYPVAVDVLSRFQSKKEQTATLEKLKKGQVDIIIGTHRLL 729

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
               +++  L L+I+DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S
Sbjct: 730  SKDVEFADLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLS 789

Query: 447  KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRS 502
             I   P  R P++T ++  N   I E I R    +  G + +++  +++  ++K S  + 
Sbjct: 790  VIETPPTNRYPVQTYVLETNPGLIREAIIR---EIDRGGQVFYVYNRVDTIDQKVSELQE 846

Query: 503  VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +V           +SI  +HG+MS+I  E+ +  F  G   +L+ATT+IE G+D+ + + 
Sbjct: 847  LVPE---------ASIGFVHGQMSEIQLENTLMDFIEGVYDVLVATTIIETGVDISNVNT 897

Query: 563  IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DG 617
            + IENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   G
Sbjct: 898  LFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLDAIKGFTELGSG 957

Query: 618  FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAK 664
            F IA  DL  R  G ILG  QSG    +    E++  LLE  IA+K  K
Sbjct: 958  FKIAMRDLSIRGAGNILGASQSGFIDSV--GFEMYSQLLEEAIAKKQGK 1004


>gi|237797686|ref|ZP_04586147.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020536|gb|EGI00593.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 1150

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 599 GFPFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + D E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 838 E---------ARIGIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVL 948

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968


>gi|27365411|ref|NP_760939.1| transcription-repair coupling factor [Vibrio vulnificus CMCP6]
 gi|37680549|ref|NP_935158.1| transcription-repair coupling factor [Vibrio vulnificus YJ016]
 gi|27361558|gb|AAO10466.1| transcription-repair coupling factor [Vibrio vulnificus CMCP6]
 gi|37199297|dbj|BAC95129.1| transcription-repair coupling factor [Vibrio vulnificus YJ016]
          Length = 1153

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 143/380 (37%), Positives = 212/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A +   Q  ++
Sbjct: 599 GFPFEETDDQSMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNDKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ +E +A+G+  I++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQIMEDVANGKVDILVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 SDLKFSDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   PA R  IKT    +   D+ + R  ++  +  G + Y++  Q+E         V E
Sbjct: 779 IATPPARRLAIKTF---VRESDDAVVREAILREIMRGGQVYFLHNQVE-----TIEKVAE 830

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
               L     + + I HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II+
Sbjct: 831 DLTKLVPE--ARVTIAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIM 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFLI 620
           + A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF +
Sbjct: 889 DRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKSMTKDAIKRLDAIASLEDLGAGFTL 948

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG +QSG
Sbjct: 949 ATHDLEIRGAGELLGDEQSG 968


>gi|330961341|gb|EGH61601.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 1150

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 599 GFPFEETPDQQTTIEAVRADMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + D E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 838 E---------ARIGIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVL 948

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968


>gi|295096197|emb|CBK85287.1| transcription-repair coupling factor [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 1148

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    N  + +E+++       + + LE+ + G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQTQILEQASEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREVLRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   +R   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAADRLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965


>gi|33152114|ref|NP_873467.1| transcription repair coupling factor [Haemophilus ducreyi 35000HP]
 gi|33148336|gb|AAP95856.1| transcription repair coupling factor [Haemophilus ducreyi 35000HP]
          Length = 1160

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 148/381 (38%), Positives = 216/381 (56%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T+ Q+ AI  ++ DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++
Sbjct: 609 SFPFEETEDQKLAIHAVISDMCQAKAMDRLICGDVGFGKTEVAMRATYLAVENHKQVAVL 668

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHYE  K    N  I +E+++       ++  L R+A  +  I+IGTH L Q
Sbjct: 669 VPTTLLAQQHYEDFKDRFANYPINIEVLSRFKTAKEQKDILARVATHKVDILIGTHKLLQ 728

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D+++++ L L+++DE+HRF V+Q+ K+ Q      +L +TATPIPRTL +   G  D+S 
Sbjct: 729 DNVKFHDLGLLVIDEEHRFSVRQKEKIKQLRANIDILTLTATPIPRTLNMALNGMRDLSI 788

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVV 504
           I   P+ R  IKT +    + D +I+  + +L E   G + Y++   +     +   +  
Sbjct: 789 IASPPSRRLTIKTFV--CQQDDTIIK--EAILREILRGGQVYYLHNDV-----ATIENCA 839

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L     + I I HG+M + D E VM  F +    LL+ +T+IE GIDV  A+ II
Sbjct: 840 TKLAELVPE--ARIVIGHGQMRERDLERVMSDFYHQRFNLLVCSTIIETGIDVPTANTII 897

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRL---SVLKNTEDGFL 619
           IE A  FGLAQLHQLRGRVGR    +   LL  HP  L+K++  RL   S + N   GF+
Sbjct: 898 IEQANKFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKTLTKDAQQRLEAISSIDNLGAGFV 957

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG +QSG
Sbjct: 958 LATHDLEIRGAGELLGAEQSG 978


>gi|283784907|ref|YP_003364772.1| transcription-repair coupling factor [Citrobacter rodentium ICC168]
 gi|282948361|emb|CBG87947.1| transcription-repair coupling factor [Citrobacter rodentium ICC168]
          Length = 1148

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    N  + +E+++       + + LE+ A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +  V+R   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAVDRLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965


>gi|134302051|ref|YP_001122020.1| transcription-repair coupling factor [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049828|gb|ABO46899.1| transcription-repair coupling factor [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 1141

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +   + P+  T  Q SAI D+ +DM     M R++ GDVG GKT +A+ A   A +   Q
Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQ 648

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             I+ P  ILAQQHY   K    NT   +E+IT +     +++  E +  G   IIIGTH
Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAFNIEVITRSKTPKAQQQLFEDLKKGTVDIIIGTH 708

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L    I +  L L+I+DE+HRFGV Q+ KL        +L M+ATPIPR+L +      
Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768

Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499
           D+S I   PA R  +KT +     N I E + R  +    G + +++  ++E  +KK+  
Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            + +  R           IAI HG+MS+ + + VM  FK+    +L+ TT+IE GID+ +
Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616
           A+ +IIE+A + GLAQLHQLRGRVGR    +   +L      ++K++  RL  + NTE  
Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEASITKDALKRLEAISNTESL 936

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GEILG +QSG
Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962


>gi|254369252|ref|ZP_04985264.1| transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. holarctica FSC022]
 gi|157122202|gb|EDO66342.1| transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. holarctica FSC022]
          Length = 1141

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +   + P+  T  Q SAI D+ +DM     M R++ GDVG GKT + + A   A +   Q
Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEITMRAAFLATQNQKQ 648

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             I+ P  ILAQQHY   K    NT I +E+IT +     +++  E +  G   IIIGTH
Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAINIEVITRSKTSKAQQQLFEDLKKGTVDIIIGTH 708

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L    I +  L L+I+DE+HRFGV Q+ KL        +L M+ATPIPR+L +      
Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768

Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499
           D+S I   PA R  +KT +     N I E + R  +    G + +++  ++E  +KK+  
Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            + +  R           IAI HG+MS+ + + VM  FK+    +L+ TT+IE GID+ +
Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKHHILLCTTIIETGIDIPN 876

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616
           A+ +IIE+A + GLAQLHQLRGRVGR    +   +L      ++K++  RL  + NTE  
Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNKASITKDALKRLEAISNTESL 936

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GEILG +QSG
Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962


>gi|319945976|ref|ZP_08020225.1| transcription-repair coupling factor [Streptococcus australis ATCC
           700641]
 gi|319747784|gb|EFW00029.1| transcription-repair coupling factor [Streptococcus australis ATCC
           700641]
          Length = 1170

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 145/400 (36%), Positives = 226/400 (56%), Gaps = 23/400 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV+   Q  ++ 
Sbjct: 612 FPYVETDDQIRSIQEIKKDMESSSPMDRLLVGDVGFGKTEVAMRAAFKAVKDHKQVAVLV 671

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQHY   K+  +   + V++++    +A +++ LE++  GQ  I+IGTH L   
Sbjct: 672 PTTVLAQQHYANFKERFEAFPVEVDVLSRFRSRAEQKETLEKLKKGQVDILIGTHRLLSK 731

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +++  L L+++DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I
Sbjct: 732 DVEFSDLGLIVIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVI 791

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
              P  R P++T ++  N   I + I R    +  G + Y++  +++  E+K S  + +V
Sbjct: 792 ETPPTNRYPVQTYVLETNPTIIRDAIRR---EMDRGGQVYYLYNKVDTIEQKVSELQELV 848

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      +SI  +HG+MS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + 
Sbjct: 849 PE---------ASIGFVHGQMSEVRLENTLMDFIEGEYDILVTTTIIETGVDIPNANTLF 899

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619
           IENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   GF 
Sbjct: 900 IENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKTLTEVSEKRLEAIKGFTELGSGFK 959

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           IA  DL  R  G ILG  QSG    +    E++  LLE A
Sbjct: 960 IAMRDLSIRGAGNILGASQSGFIDSVGF--EMYSQLLEAA 997


>gi|205353050|ref|YP_002226851.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272831|emb|CAR37757.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628129|gb|EGE34472.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 1148

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 149/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +EI++       + + L   A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEILSRFRSAKEQTQILAEAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|120598668|ref|YP_963242.1| transcription-repair coupling factor [Shewanella sp. W3-18-1]
 gi|120558761|gb|ABM24688.1| transcription-repair coupling factor [Shewanella sp. W3-18-1]
          Length = 1162

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/384 (38%), Positives = 213/384 (55%), Gaps = 23/384 (5%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           +  PF  T  QESAI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V+
Sbjct: 607 QGFPFEETVDQESAIHAVLADMRSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVV 666

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  +LAQQHYE  K    +  ++ E+++       + + L+++  G+  I+IGTH L 
Sbjct: 667 LVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLL 726

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           Q   ++  L L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S
Sbjct: 727 QSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLS 786

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFR 501
            I   PA R  +KT +    R  +     + +L E   G + Y++   +E  EK      
Sbjct: 787 IIATPPAKRLAVKTFV----RESDPATVREAILREILRGGQVYYLHNNVESIEKCAQGII 842

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            +V           + + + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+
Sbjct: 843 DLVPE---------ARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSAN 893

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED--- 616
            IIIE A+ FGLAQLHQLRGRVGR    +   L+  HP  ++ ++  RL  +   ED   
Sbjct: 894 TIIIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGA 953

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF++A +DL+ R  GE+LG +QSG
Sbjct: 954 GFMLATQDLEIRGAGELLGDEQSG 977


>gi|332993550|gb|AEF03605.1| transcription-repair coupling factor [Alteromonas sp. SN2]
          Length = 1172

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 148/396 (37%), Positives = 220/396 (55%), Gaps = 17/396 (4%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   N+E    QK   + PF  T  Q  AI  ++ DM   + M R++ GDVG GKT VA+
Sbjct: 605 GFAYNIEWDEYQKFADSFPFEETPDQAQAIAAVIHDMGSPHAMDRLVCGDVGFGKTEVAM 664

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   A   G Q  I+ P  +LAQQH+E  K         +E+++  +    +++ ++R+
Sbjct: 665 RAAFLAANQGKQVAILVPTTLLAQQHHENFKDRFAAWPFEIEVMSRFISAKGQKETMQRL 724

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           + G+  I++GTH L  + I++  L L+I+DE+HRFGV+Q+ KL        +L +TATPI
Sbjct: 725 SEGKVDIVVGTHKLLSNDIKFKDLGLLIIDEEHRFGVRQKEKLKSLRADVDILTLTATPI 784

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489
           PRTL +   G  D+S I   PA R  IKT +   N+  I E I R    +  G + Y++ 
Sbjct: 785 PRTLNMAMSGMRDLSIIATAPARRLSIKTFVQQRNKATIREAIMR---EILRGGQVYFLH 841

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            ++    ++  R+  E    + E   + IA+ HG+M + + E VM  F +    +L+ TT
Sbjct: 842 NEV----DTIARTAEEIAEIVPE---ARIAMGHGQMRERELEGVMSDFYHQRYNVLVCTT 894

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTR 607
           +IE GIDV  A+ II++ A+H GLAQLHQLRGRVGR    +   LL  HP  ++K++  R
Sbjct: 895 IIETGIDVPSANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAAKR 954

Query: 608 LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           L  +   ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 955 LDAISKLEDLGAGFALATHDLEIRGAGELLGDDQSG 990


>gi|71278327|ref|YP_268864.1| transcription-repair coupling factor [Colwellia psychrerythraea 34H]
 gi|71144067|gb|AAZ24540.1| transcription-repair coupling factor [Colwellia psychrerythraea 34H]
          Length = 1207

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 141/379 (37%), Positives = 214/379 (56%), Gaps = 21/379 (5%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q+ AI  ++ DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P 
Sbjct: 662  FEETFDQKQAINAVVSDMLSPKTMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPT 721

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LAQQHYE  +    N  ++ E+++       +++ + R+  GQ  I+IGTH L Q+SI
Sbjct: 722  TLLAQQHYENFRDRFANWPVVTEVLSRFKTPKEQKEVIARVESGQVDILIGTHKLLQNSI 781

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +Y  L L++VDE+HRFGV+Q+ K+ Q  +   +L +TATPIPRTL +   G  D+S I  
Sbjct: 782  KYKDLGLLVVDEEHRFGVKQKEKIKQLRSNVDILTLTATPIPRTLNMAMGGMRDLSIIAT 841

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVER 506
             PA R  +KT    +   DE + R  V+   S G + Y++   ++  +K  ++ + +V  
Sbjct: 842  PPAKRLAVKTF---VREHDEALIREAVLRETSRGGQVYYLHNHVDTIDKTAADIQKLVPE 898

Query: 507  FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                     + +   HG+M + + E +M  F +    +++ TT+IE GIDV  A+ II++
Sbjct: 899  ---------ARVVTAHGQMRERELERIMSDFYHQRFNVIVCTTIIETGIDVPSANTIIMD 949

Query: 567  NAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLIA 621
             A+H GLAQLHQLRGRVGR    +   LL  +   ++K++  RL  + + ED   GF +A
Sbjct: 950  RADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHEKRITKDAKKRLEAIASLEDLGAGFTLA 1009

Query: 622  EEDLKQRKEGEILGIKQSG 640
              DL+ R  GE+LG  QSG
Sbjct: 1010 THDLEIRGAGELLGEDQSG 1028


>gi|323222138|gb|EGA06523.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 1049

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 492 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 551

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 552 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILSEAAEGKIDILIGT 611

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 612 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 671

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 672 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 722

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 723 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 780

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 781 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 840

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 841 GAGFALATHDLEIRGAGELLGEEQSG 866


>gi|146293254|ref|YP_001183678.1| transcription-repair coupling factor [Shewanella putrefaciens CN-32]
 gi|145564944|gb|ABP75879.1| transcription-repair coupling factor [Shewanella putrefaciens CN-32]
          Length = 1162

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 158/430 (36%), Positives = 232/430 (53%), Gaps = 29/430 (6%)

Query: 267  RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            +  PF  T  QESAI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V+
Sbjct: 607  QGFPFEETVDQESAIHAVLADMRSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVV 666

Query: 327  MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            + P  +LAQQHYE  K    +  ++ E+++       + + L+++  G+  I+IGTH L 
Sbjct: 667  LVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLL 726

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            Q   ++  L L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S
Sbjct: 727  QSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLS 786

Query: 447  KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFR 501
             I   PA R  +KT +    R  +     + +L E   G + Y++   +E  EK      
Sbjct: 787  IIATPPAKRLAVKTFV----RESDPATVREAILREILRGGQVYYLHNNVESIEKCAQGII 842

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             +V           + + + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+
Sbjct: 843  DLVPE---------ARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSAN 893

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED--- 616
             IIIE A+ FGLAQLHQLRGRVGR    +   L+  HP  ++ ++  RL  +   ED   
Sbjct: 894  TIIIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGA 953

Query: 617  GFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            GF++A +DL+ R  GE+LG +QSG + K   +   L+  +LE A K  K    ++P L  
Sbjct: 954  GFMLATQDLEIRGAGELLGDEQSGHISKIGFS---LYMEMLEAAVKALKQ--GKEPSLAQ 1008

Query: 676  VRGQSIRILL 685
            +  Q   I L
Sbjct: 1009 MLNQQCEIEL 1018


>gi|288549507|ref|ZP_06390702.1| transcription-repair coupling factor [Enterobacter cancerogenus
           ATCC 35316]
 gi|288318220|gb|EFC57158.1| transcription-repair coupling factor [Enterobacter cancerogenus
           ATCC 35316]
          Length = 992

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 214/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 435 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNK 494

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    N  + +E+++       +   LE+ + G+  I+IGT
Sbjct: 495 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQTSILEQASEGKIDILIGT 554

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 555 HKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 614

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 615 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREVLRGGQVYYLYNDVE-----N 665

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   +R   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 666 IQKAADRLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 723

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 724 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 783

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 784 GAGFALATHDLEIRGAGELLGEDQSG 809


>gi|238758409|ref|ZP_04619586.1| Transcription-repair-coupling factor [Yersinia aldovae ATCC 35236]
 gi|238703313|gb|EEP95853.1| Transcription-repair-coupling factor [Yersinia aldovae ATCC 35236]
          Length = 1148

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 212/386 (54%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   ++ PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    
Sbjct: 591 QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVANNK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +       + +E+++       ++  L + A G+  IIIGT
Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFRSAKEQQVILGQAAEGKVDIIIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  + ++ L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDLHWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                +R   L     + IAI HG+M + D E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IEKATQRLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL   P  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965


>gi|121998047|ref|YP_001002834.1| transcription-repair coupling factor [Halorhodospira halophila SL1]
 gi|121589452|gb|ABM62032.1| transcription-repair coupling factor [Halorhodospira halophila SL1]
          Length = 1147

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 151/403 (37%), Positives = 223/403 (55%), Gaps = 19/403 (4%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T  Q++AI+ +L D+     M R++ GDVG GKT VA+ A  A V+AG Q  ++ 
Sbjct: 594 FPFEETPDQQAAIQAVLDDLRSDQPMDRVVCGDVGFGKTEVAMRAAFAGVQAGRQVAMLV 653

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQHY+       +  + +E ++    +    K L RIA G+A ++IGTH L   
Sbjct: 654 PTTLLAQQHYQNFADRFADWPVRIESLSRFTGKKGNEKTLARIASGEADVVIGTHKLLGS 713

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +Q+  L LVI+DE+ RFGV+Q+ +L +      VL +TATPIPRTL ++  G  D+S I
Sbjct: 714 EVQFKNLGLVIIDEEQRFGVRQKERLKRLRAEVDVLTLTATPIPRTLNMSMAGIRDLSVI 773

Query: 449 TEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
              P  R  +KT +   +  D +I E  +  L  G + Y++         ++ +S+    
Sbjct: 774 ATPPERRLAVKTFVQEWS--DGLIREACQRELQRGGQVYFLY--------NDVKSIERTA 823

Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           N L +    + I + HG+M + + E VM  F +    +L+ TT+IE GID+  A+ III 
Sbjct: 824 NQLRDLMPEARIGVAHGQMRERELEQVMLDFYHQRFDILVCTTIIESGIDIPTANTIIIH 883

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGLAQLHQLRGRVGR    +   LL  PP  ++ ++  RL  +   ED   GF +A
Sbjct: 884 RADRFGLAQLHQLRGRVGRSHHRAYAYLLAPPPNAMTADALKRLEAISQLEDLGVGFALA 943

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             DL+ R  GE+LG +QSG  + +     L+  LLE A KD K
Sbjct: 944 SHDLEIRGAGELLGDEQSGQIQEVGFT--LYSQLLERAVKDLK 984


>gi|56707766|ref|YP_169662.1| transcription-repair coupling factor [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670237|ref|YP_666794.1| transcription-repair coupling factor [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456837|ref|ZP_03665310.1| transcription-repair coupling factor [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254874578|ref|ZP_05247288.1| transcription-repair coupling factor, ATP-dependent [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|56604258|emb|CAG45277.1| Transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320570|emb|CAL08660.1| Transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. tularensis FSC198]
 gi|254840577|gb|EET19013.1| transcription-repair coupling factor, ATP-dependent [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158938|gb|ADA78329.1| Transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 1141

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +   + P+  T  Q SAI D+ +DM     M R++ GDVG GKT +A+ A   A +   Q
Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQ 648

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             I+ P  ILAQQHY   K    NT   +E+IT +     +++  E +  G   IIIGTH
Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAFNIEVITRSKTPKAQQQLFEDLKKGTIDIIIGTH 708

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L    I +  L L+I+DE+HRFGV Q+ KL        +L M+ATPIPR+L +      
Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768

Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499
           D+S I   PA R  +KT +     N I E + R  +    G + +++  ++E  +KK+  
Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            + +  R           IAI HG+MS+ + + VM  FK+    +L+ TT+IE GID+ +
Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616
           A+ +IIE+A + GLAQLHQLRGRVGR    +   +L      ++K++  RL  + NTE  
Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEASITKDALKRLEAISNTESL 936

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GEILG +QSG
Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962


>gi|311279979|ref|YP_003942210.1| transcription-repair coupling factor [Enterobacter cloacae SCF1]
 gi|308749174|gb|ADO48926.1| transcription-repair coupling factor [Enterobacter cloacae SCF1]
          Length = 1148

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 214/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       +   LE+ + G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQSLILEQASEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAMLREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   +R   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAADRLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965


>gi|227512317|ref|ZP_03942366.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC
           11577]
 gi|227084492|gb|EEI19804.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC
           11577]
          Length = 1168

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 144/429 (33%), Positives = 232/429 (54%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  ++  +K    P   +  +  +     P++ T  Q 
Sbjct: 559 EWQKTKRKVASKIEDIADDLIELYAKRDAEKGYAYP--PDDSLQNEFEARFPYTETPDQL 616

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I  DM     M R+L GDVG GKT VAL A   AVE G Q   + P  ILAQQHY
Sbjct: 617 RSADEIKHDMEHNKPMDRLLVGDVGYGKTEVALRAAFKAVEVGKQVAFLVPTTILAQQHY 676

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + +   +  I V +++     A  ++ LE +  G   +++GTH L    +++  L L+
Sbjct: 677 ETMLERFSDYPIEVRVLSRFQTTAQIKETLEGLKKGTVDVVVGTHRLLSKDVKFSNLGLL 736

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + ++ +  T   VL +TATPIPRTL ++ +G  D+S I   P+ R PI
Sbjct: 737 IIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIPRTLNMSMMGVRDLSVIETPPSNRYPI 796

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +I  N   I E IER    ++ G + +++  ++     ++    V + + L     +
Sbjct: 797 QTYVIEQNAGTIREAIER---EMARGGQVFYLHNRV-----ADIEKTVSQLSELVPD--A 846

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA IHG+M++   E ++  F NG   +L+ TT+IE G+D+ + + + +ENA+H GL+QL
Sbjct: 847 RIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADHMGLSQL 906

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    +Y P   L++    RL  +++ TE   GF IA  DL  R  G
Sbjct: 907 YQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELGSGFKIAMRDLSIRGAG 966

Query: 632 EILGIKQSG 640
            +LG +QSG
Sbjct: 967 NLLGKQQSG 975


>gi|238791842|ref|ZP_04635479.1| Transcription-repair-coupling factor [Yersinia intermedia ATCC
           29909]
 gi|238728946|gb|EEQ20463.1| Transcription-repair-coupling factor [Yersinia intermedia ATCC
           29909]
          Length = 1148

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   ++ PF  T  QE AI  +L DM +   M R++ GDVG GKT VA+ A   AV    
Sbjct: 591 QLFCQSFPFETTPDQEQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVANNK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +       + +E+++       ++  LE+ A G+  IIIGT
Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFRSAKEQQVILEQAAEGKVDIIIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDLRWQDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVIR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                +R   L     + IAI HG+M + D E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IEKATQRLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL   P  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965


>gi|168021077|ref|XP_001763068.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685551|gb|EDQ71945.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 792

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 144/424 (33%), Positives = 242/424 (57%), Gaps = 19/424 (4%)

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           ++ +LA  +L+   + L + R +  + +  P N   K+        P+  T  Q  AI D
Sbjct: 193 SKGKLAIQKLVVNMMELYIHRLKQTRPV-YPKN--SKLMDSFAAKFPYKETSDQVQAIAD 249

Query: 284 ILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           + +DM+++   M R++ GDVG GKT VAL A+  A  AG QA+++AP  +LA+QHY+ I+
Sbjct: 250 VERDMTERETPMDRLICGDVGFGKTEVALRALFLAASAGRQAMLLAPTTVLAKQHYDVIR 309

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +      + V +++       +++ +  I+ G   I++GTH+L  + ++Y+ L L++VDE
Sbjct: 310 QRFAGYDMKVALLSRFQKDGEKKEVIAGISDGSLSIVVGTHSLLGNQVRYHNLGLLVVDE 369

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + RFGV+Q+ ++T   T+  VL ++ATPIPRTL L   G  D S IT  PA R+PI T +
Sbjct: 370 EQRFGVRQKERITSMKTSVDVLTLSATPIPRTLYLALSGFRDASLITTPPAERRPITTHL 429

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
           +  N  + V + +   L  G + +++ P+++  +ES  ++++E +          I + H
Sbjct: 430 MEFNP-EAVKKAIDFELKRGGQVFYVVPRVKGMEES--KAILESYFP-----DVGIGVAH 481

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+ S    E  M+ F  GT  +L+ T+++E G+D+   + IIIE+ + FGLAQL+QLRGR
Sbjct: 482 GQQSATVLEESMEQFSEGTYLILLCTSIVESGLDIRRVNTIIIEDVQLFGLAQLYQLRGR 541

Query: 583 VGRGEEISSCILLYHPP---LSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636
           VGR +   +   ++HP    LS ++  RL  L++      GF +AE D+  R  G + G 
Sbjct: 542 VGRSDR-EAHAYMFHPSKENLSDDALERLVALEDCCGLGQGFQLAERDMAIRGIGSVFGE 600

Query: 637 KQSG 640
           KQSG
Sbjct: 601 KQSG 604


>gi|104782724|ref|YP_609222.1| transcription-repair coupling protein [Pseudomonas entomophila L48]
 gi|95111711|emb|CAK16435.1| transcription-repair coupling protein [Pseudomonas entomophila L48]
          Length = 1149

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++AI+ +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 598 GFPFEETPDQQAAIEAVRADMLAGQPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVL 657

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A   +A G+  I+IGTH L Q
Sbjct: 658 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVATAAAELAEGKIDILIGTHKLLQ 717

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +++  L L I+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 718 DDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 777

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   V E L   L  G + Y++   ++  EK  +    +V 
Sbjct: 778 IATPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVP 836

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ I+I
Sbjct: 837 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVI 887

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   +S ++  RL  + NT+D   GF++
Sbjct: 888 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQISADAEKRLEAIANTQDLGAGFVL 947

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 948 ATNDLEIRGAGELLGEGQSG 967


>gi|238754400|ref|ZP_04615756.1| Transcription-repair-coupling factor [Yersinia ruckeri ATCC 29473]
 gi|238707433|gb|EEP99794.1| Transcription-repair-coupling factor [Yersinia ruckeri ATCC 29473]
          Length = 1148

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 145/382 (37%), Positives = 211/382 (55%), Gaps = 19/382 (4%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           ++ PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    Q  +
Sbjct: 595 QSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVSNNKQVAV 654

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  +LAQQH++  +       + +E+++       ++  LE+ A G+  I+IGTH L 
Sbjct: 655 LVPTTLLAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKVDILIGTHKLL 714

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           Q  + +  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S
Sbjct: 715 QSDLHWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLS 774

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSV 503
            I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N    
Sbjct: 775 IIATPPARRLAVKTF---VREYDSLVVR-EAILREVLRGGQVYYLYNDVE-----NIEKA 825

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +R   L     + IAI HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ I
Sbjct: 826 TQRLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTI 883

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618
           IIE A+HFGLAQLHQLRGRVGR    +   LL   P  ++ ++  RL  + + ED   GF
Sbjct: 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDLGAGF 943

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG  QSG
Sbjct: 944 ALATHDLEIRGAGELLGEDQSG 965


>gi|227522403|ref|ZP_03952452.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC
           8290]
 gi|227090461|gb|EEI25773.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC
           8290]
          Length = 1168

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 144/429 (33%), Positives = 232/429 (54%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  ++  +K    P   +  +  +     P++ T  Q 
Sbjct: 559 EWQKTKRKVASKIEDIADDLIELYAKRDAEKGYAYP--PDDSLQNEFEARFPYTETPDQL 616

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I  DM     M R+L GDVG GKT VAL A   AVE G Q   + P  ILAQQHY
Sbjct: 617 RSADEIKHDMEHNKPMDRLLVGDVGYGKTEVALRAAFKAVEVGKQVAFLVPTTILAQQHY 676

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + +   +  I V +++     A  ++ LE +  G   +++GTH L    +++  L L+
Sbjct: 677 ETMLERFSDYPIEVRVLSRFQTTAQIKETLEGLKKGTVDVVVGTHRLLSKDVKFSNLGLL 736

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + ++ +  T   VL +TATPIPRTL ++ +G  D+S I   P+ R PI
Sbjct: 737 IIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIPRTLNMSMMGVRDLSVIETPPSNRYPI 796

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +I  N   I E IER    ++ G + +++  ++     ++    V + + L     +
Sbjct: 797 QTYVIEQNAGTIREAIER---EMARGGQVFYLHNRV-----ADIEKTVSQLSELVPD--A 846

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA IHG+M++   E ++  F NG   +L+ TT+IE G+D+ + + + +ENA+H GL+QL
Sbjct: 847 RIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADHMGLSQL 906

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    +Y P   L++    RL  +++ TE   GF IA  DL  R  G
Sbjct: 907 YQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELGSGFKIAMRDLSIRGAG 966

Query: 632 EILGIKQSG 640
            +LG +QSG
Sbjct: 967 NLLGKQQSG 975


>gi|153948693|ref|YP_001400575.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
           IP 31758]
 gi|152960188|gb|ABS47649.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
           IP 31758]
          Length = 1148

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   ++ PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    
Sbjct: 591 QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +       + +E+++       ++  LE+ A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  + ++ L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDLHWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVIR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              V ++   L     + IAI HG+M + D E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IEKVTQKLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+H GLAQLHQLRGRVGR    +   LL   P  +S ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHLGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965


>gi|315222838|ref|ZP_07864723.1| transcription-repair coupling factor [Streptococcus anginosus F0211]
 gi|315188074|gb|EFU21804.1| transcription-repair coupling factor [Streptococcus anginosus F0211]
          Length = 1168

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 157/439 (35%), Positives = 240/439 (54%), Gaps = 30/439 (6%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I L   R Q K   G   + +    Q+   + P+  T+ Q  +IK++ +DM   + M R+
Sbjct: 584  IKLYSERSQLK---GFAFSSDDSYQQEFDNDFPYVETEDQLRSIKEVKKDMESDHPMDRL 640

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            L GDVG GKT VA+ A   AV    Q  I+ P  +LAQQHY   K+   +  I +E+++ 
Sbjct: 641  LVGDVGFGKTEVAMRAAFKAVNDHKQVAILVPTTVLAQQHYTNFKERFNDFPINIEVLSR 700

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               ++ ++  LE++  GQ  IIIGTH L    I +  L L+++DE+ RFGV+ + KL + 
Sbjct: 701  FKSKSEQKIILEKLKKGQVDIIIGTHRLLSKDIVFADLGLIVIDEEQRFGVKHKEKLKEL 760

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI---DEVIER 474
             T   VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N     D V+  
Sbjct: 761  KTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNATVIRDAVLRE 820

Query: 475  LKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
                +  G + Y++  +++  E+K S  + ++           +SI  +HG+MS+I  E+
Sbjct: 821  ----MDRGGQVYYLYNKVDTMEQKVSELKELIPE---------ASIGYVHGQMSEILLEN 867

Query: 533  VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
             +  F NG   +L+ TT+IE G+D+ + + + IENA++ GL+ L+QLRGR+GR   I+  
Sbjct: 868  TLLDFINGEYDILVTTTIIETGVDIPNVNTLFIENADYMGLSTLYQLRGRIGRSNRIAYA 927

Query: 593  ILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +  
Sbjct: 928  YLMYRPDKILTEISEKRLETIKGFTELGSGFKIAMRDLSIRGAGNILGSSQSGFIDSV-- 985

Query: 648  QPELHDSLLE--IARKDAK 664
              E++  LLE  IA+K  K
Sbjct: 986  GFEMYSQLLEEAIAKKQGK 1004


>gi|213649271|ref|ZP_03379324.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 1130

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 573 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 632

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 633 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 692

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 693 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 752

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 753 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 803

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 804 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 861

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 862 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDL 921

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 922 GAGFALATHDLEIRGAGELLGEEQSG 947


>gi|51596765|ref|YP_070956.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
           IP 32953]
 gi|186895833|ref|YP_001872945.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590047|emb|CAH21681.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
           IP 32953]
 gi|186698859|gb|ACC89488.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
           PB1/+]
          Length = 1148

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   ++ PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    
Sbjct: 591 QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +       + +E+++       ++  LE+ A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  + ++ L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDLHWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVIR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              V ++   L     + IAI HG+M + D E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IEKVTQKLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+H GLAQLHQLRGRVGR    +   LL   P  +S ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHLGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965


>gi|332306962|ref|YP_004434813.1| transcription-repair coupling factor [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174291|gb|AEE23545.1| transcription-repair coupling factor [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1160

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 146/387 (37%), Positives = 212/387 (54%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q+ AI  ++QDM   N M R++ GDVG GKT VA+ A   A   G 
Sbjct: 602 QAFSDSFPFEETLDQQQAINAVIQDMGSSNAMDRLVCGDVGFGKTEVAMRAAFIAANQGK 661

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  +LAQQHYE  K    +    +E+++       ++  +  +  G+  I++GT
Sbjct: 662 QVAILVPTTLLAQQHYENFKDRFADWPFKIEVMSRFASAKDQKDVMAGLDDGKVDIVVGT 721

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L LVI+DE+HRFGV+Q+ K     +   +L +TATPIPRTL +   G 
Sbjct: 722 HKLLQSDVKFDDLGLVIIDEEHRFGVRQKEKFKALRSDVDILTLTATPIPRTLNMALSGM 781

Query: 443 IDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   PA R  IKT +   N+  I E I R    +  G + Y++  ++E  E+   
Sbjct: 782 RDLSIIATPPAKRLAIKTFVNQRNKELIREAIMR---EILRGGQVYFLHNEVESIERTAD 838

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + IAI HG+M + + E VM  F +    +L+ TT+IE GIDV 
Sbjct: 839 EIAEIVPE---------ARIAIGHGQMRERELEKVMGDFYHQRYNVLVCTTIIETGIDVP 889

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED 616
            A+ II++ A+H GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED
Sbjct: 890 TANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAKKRLDAISSLED 949

Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSG 640
              GF +A  DL+ R  GE+LG  Q+G
Sbjct: 950 LGAGFALATHDLEIRGAGELLGDDQTG 976


>gi|156973818|ref|YP_001444725.1| transcription-repair coupling factor [Vibrio harveyi ATCC BAA-1116]
 gi|156525412|gb|ABU70498.1| hypothetical protein VIBHAR_01528 [Vibrio harveyi ATCC BAA-1116]
          Length = 1153

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 142/381 (37%), Positives = 213/381 (55%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI  +L DM Q   M R++ GDVG GKT VA+ A   A +   Q  ++
Sbjct: 599 TFPFEETDDQSTAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  L+ +A G+  I++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAYWICPQIE--EKKESNFRSVV 504
           I   PA R  IKT +    R D V+    +  +  G + Y++  Q+E  EK   + + ++
Sbjct: 779 IATPPARRLAIKTFV--RQREDSVVREAALREIMRGGQVYFLHNQVETIEKTAEDLQKLI 836

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + + + HG+M + + E +M+ F +    LL+ TT+IE GIDV  A+ II
Sbjct: 837 PE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTII 887

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFL 619
           ++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF 
Sbjct: 888 MDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAGFT 947

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG +QSG
Sbjct: 948 LATHDLEIRGAGELLGDEQSG 968


>gi|167011026|ref|ZP_02275957.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 847

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 145/382 (37%), Positives = 210/382 (54%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q SAI D+ +DM     M R++ GDVG GKT + + A   A +   Q  I+
Sbjct: 299 DFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEITMRAAFLATQNQKQVAIL 358

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHY   K    NT I +E+IT +     +++  E +  G   IIIGTH L  
Sbjct: 359 VPTTILAQQHYNSFKDRFTNTAINIEVITRSKTSKAQQQLFEDLKKGTVDIIIGTHKLIS 418

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I +  L L+I+DE+HRFGV Q+ KL        +L M+ATPIPR+L +      D+S 
Sbjct: 419 SKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALRDLSI 478

Query: 448 ITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  +KT +     N I E + R  +    G + +++  ++E  +KK+   + +
Sbjct: 479 IASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEILQEL 535

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
             R           IAI HG+MS+ + + VM  FK+    +L+ TT+IE GID+ +A+ +
Sbjct: 536 FPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPNANTL 586

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618
           IIE+A + GLAQLHQLRGRVGR    +   +L      ++K++  RL  + NTE    GF
Sbjct: 587 IIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNKASITKDALKRLEAISNTESLGGGF 646

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GEILG +QSG
Sbjct: 647 TLANHDLEIRGAGEILGEEQSG 668


>gi|161503691|ref|YP_001570803.1| transcription-repair coupling factor [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865038|gb|ABX21661.1| hypothetical protein SARI_01775 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 1148

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQILAEAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREVLRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|228476216|ref|ZP_04060919.1| transcription-repair coupling factor [Staphylococcus hominis SK119]
 gi|228269701|gb|EEK11200.1| transcription-repair coupling factor [Staphylococcus hominis SK119]
          Length = 1169

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 153/417 (36%), Positives = 231/417 (55%), Gaps = 21/417 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  +I++I +DM ++  M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 615  DFPYELTPDQAKSIEEIKEDMEKERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 674

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE + +  Q+  + +++I+        R+  E +  G   I++GTH L  
Sbjct: 675  VPTTILAQQHYETLIERMQDFPVEIQLISRFRTAKEVRETKEGLKSGYVDIVVGTHKLLS 734

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              IQY  L L+IVDE+ RFGV+ + ++    T   VL +TATPIPRTL ++ LG  D+S 
Sbjct: 735  KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPRTLHMSMLGVRDLSV 794

Query: 448  ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 795  IETPPENRFPVQTYVLEQNSNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 843

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L      ++IA+ HG+M++ D E  M SF NG   +L+ TT+IE G+DV +A+ +I
Sbjct: 844  KREQLQMLMPEANIAVAHGQMTERDLEETMLSFINGEYDILVTTTIIETGVDVPNANTLI 903

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFL 619
            IE A+ FGL+QL+QLRGRVGR   I     L+  +  L++ +  RL  +K  TE   GF 
Sbjct: 904  IEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHSTNKVLTETAEERLQAIKEFTELGSGFK 963

Query: 620  IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            IA  DL  R  G +LG +Q G    +    +L+  +LE A  + + I  + PD   V
Sbjct: 964  IAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGITEEVPDAPDV 1018


>gi|227509305|ref|ZP_03939354.1| transcription-repair coupling factor [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227191235|gb|EEI71302.1| transcription-repair coupling factor [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 1168

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 144/429 (33%), Positives = 232/429 (54%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  ++  +K    P   +  +  +     P++ T  Q 
Sbjct: 559 EWQKTKRKVASKIEDIADDLIELYAKRDAEKGYAYP--PDDSLQNEFEARFPYTETPDQL 616

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I  DM     M R+L GDVG GKT VAL A   AVE G Q   + P  ILAQQHY
Sbjct: 617 RSADEIKHDMEHNKPMDRLLVGDVGYGKTEVALRAAFKAVEVGKQVAFLVPTTILAQQHY 676

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + +   +  I V +++     A  ++ LE +  G   +++GTH L    +++  L L+
Sbjct: 677 ETMLERFSDYPIEVRVLSRFQTTAQIKETLEGLKKGTVDVVVGTHRLLSKDVKFSNLGLL 736

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + ++ +  T   VL +TATPIPRTL ++ +G  D+S I   P+ R PI
Sbjct: 737 IIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIPRTLNMSMMGVRDLSVIETPPSNRYPI 796

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +I  N   I E IER    ++ G + +++  ++     ++    V + + L     +
Sbjct: 797 QTYVIEQNAGTIREAIER---EMARGGQVFYLHNRV-----ADIEKTVSQLSELVPD--A 846

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA IHG+M++   E ++  F NG   +L+ TT+IE G+D+ + + + +ENA+H GL+QL
Sbjct: 847 RIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADHMGLSQL 906

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    +Y P   L++    RL  +++ TE   GF IA  DL  R  G
Sbjct: 907 YQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELGSGFKIAMRDLSIRGAG 966

Query: 632 EILGIKQSG 640
            +LG +QSG
Sbjct: 967 NLLGKQQSG 975


>gi|170023947|ref|YP_001720452.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
           YPIII]
 gi|169750481|gb|ACA67999.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
           YPIII]
          Length = 1148

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   ++ PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    
Sbjct: 591 QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +       + +E+++       ++  LE+ A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  + ++ L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDLHWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVIR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              V ++   L     + IAI HG+M + D E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IEKVTQKLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+H GLAQLHQLRGRVGR    +   LL   P  +S ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHLGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965


>gi|238749649|ref|ZP_04611154.1| Transcription-repair-coupling factor [Yersinia rohdei ATCC 43380]
 gi|238712304|gb|EEQ04517.1| Transcription-repair-coupling factor [Yersinia rohdei ATCC 43380]
          Length = 1148

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G    ++    Q   ++ PF  T  QE AI  +L DM +   M R++ 
Sbjct: 568 LLDIYAQRAAKSGFKFKLDRDQYQLFCQSFPFETTPDQEQAINAVLSDMCRPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   +V    Q  ++ P  +LAQQH++  +       + +E+++   
Sbjct: 628 GDVGFGKTEVAMRAAFLSVANNKQVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               ++  LE+ A G+  IIIGTH L Q  +++  L L+IVDE+HRFGV+ + ++     
Sbjct: 688 SAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAIL 803

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N     +R   L     + IAI HG+M + D E VM+ 
Sbjct: 804 REVLRGGQVYYLFNDVE-----NIEKATQRLAELVPE--ARIAIGHGQMRERDLERVMND 856

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 916

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 917 PNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965


>gi|239630377|ref|ZP_04673408.1| transcription-repair coupling factor [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239526660|gb|EEQ65661.1| transcription-repair coupling factor [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 1174

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 147/431 (34%), Positives = 239/431 (55%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  A  E +A ++  L  +++ +K  G     +  +  K     P+  T  Q 
Sbjct: 567 EWQKTKRKVAARIEDIADELIDLYAKREAEK--GFAFGPDDDLQHKFEAEFPYPETPDQL 624

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + K+I  DM +   M R+L GDVG GKT VAL A   A++ G QA I+ P  ILAQQH+
Sbjct: 625 RSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHF 684

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +K+   +  I V +++        ++ ++ + +G   I++GTH L    + +  L L+
Sbjct: 685 DTMKERFADFPIKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + ++ Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 745 VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 804

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           +T ++  N   I E IER    +  G + +++  ++E+         +ER  S  E    
Sbjct: 805 QTFVMEQNPGVIREAIER---EMERGGQVFYLHNRVED---------MERTVSQLEELVP 852

Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            +S+   HG+M++   E+V+  F +G   +L+ TT+IE G+D+ +A+ +IIENA+H+GL+
Sbjct: 853 DASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLS 912

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+QLRGR+GR   ++    +Y P   L++ +  RL  +K+ TE   GF IA  DL  R 
Sbjct: 913 QLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRG 972

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 973 AGNLLGKQQHG 983


>gi|197265670|ref|ZP_03165744.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197243925|gb|EDY26545.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 1148

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|254372994|ref|ZP_04988483.1| transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. novicida GA99-3549]
 gi|151570721|gb|EDN36375.1| transcription-repair coupling factor,ATP-dependent [Francisella
           novicida GA99-3549]
          Length = 1141

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +   + P+  T  Q SAI D+ +DM     M R++ GDVG GKT +A+ A   A +   Q
Sbjct: 589 RFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQ 648

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             I+ P  ILAQQHY   K    NT + +E+IT +     +++  E +  G   IIIGTH
Sbjct: 649 VAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFEDLKKGTVDIIIGTH 708

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L    I +  L L+I+DE+HRFGV Q+ KL        +L M+ATPIPR+L +      
Sbjct: 709 KLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALR 768

Query: 444 DISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499
           D+S I   PA R  +KT +     N I E + R  +    G + +++  ++E  +KK+  
Sbjct: 769 DLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEI 825

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            + +  R           IAI HG+MS+ + + VM  FK+    +L+ TT+IE GID+ +
Sbjct: 826 LQELFPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPN 876

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616
           A+ +IIE+A + GLAQLHQLRGRVGR    +   +L      ++K++  RL  + N E  
Sbjct: 877 ANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEASITKDALKRLEAISNAESL 936

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GEILG +QSG
Sbjct: 937 GGGFTLANHDLEIRGAGEILGEEQSG 962


>gi|16760091|ref|NP_455708.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142138|ref|NP_805480.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213425039|ref|ZP_03357789.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|25290813|pir||AI0644 transcription-repair coupling factor (TrcF) STY1256 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502385|emb|CAD08340.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137767|gb|AAO69329.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 1148

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|222100017|ref|YP_002534585.1| Transcription-repair coupling factor [Thermotoga neapolitana DSM
           4359]
 gi|221572407|gb|ACM23219.1| Transcription-repair coupling factor [Thermotoga neapolitana DSM
           4359]
          Length = 895

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 140/407 (34%), Positives = 233/407 (57%), Gaps = 16/407 (3%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + L L R++ +   G  +  + ++ +K     P+  T  Q+  I+++L D+S +  M R+
Sbjct: 340 VELYLKREEVR---GTLLPGDPELEEKFAETFPYIETPDQQKCIEEVLTDLSSEKPMDRL 396

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           L GD G GKT VAL A   AV +G Q  ++ P  +LA+QHYE  K+  +   + VE++  
Sbjct: 397 LCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVLARQHYENFKERLEPFGVRVELLDS 456

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           +     R++ LE +  G+  ++IGTHAL  + +++  L LVI+DE+ +FGV+Q+ K  + 
Sbjct: 457 SRTLRERKEILEGLKKGEIDVVIGTHALLNERVEFSDLGLVIIDEEQKFGVEQKEKFKKM 516

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             + +VL ++ATPIPRTL +   G  D+S I   P GRKP+   I   N  +E+++   V
Sbjct: 517 RLSVNVLSLSATPIPRTLHMALSGMKDLSVINAPPPGRKPVHVYIAEYN--EELVKGAVV 574

Query: 478 -VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             ++ G +  ++  ++EE  E     V+E    +       IA+ HG+MS    E V+  
Sbjct: 575 REVNRGGQVIYVHNRVEELPE-----VLENLKRMFPEL--RIAMAHGKMSRRVMEKVVHE 627

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G   +L+ TT+IE G+D+ +A+ +I+++A  +GLAQL+QLRGRVGR +  +    LY
Sbjct: 628 FYSGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLAQLYQLRGRVGRSDRRAFAYFLY 687

Query: 597 HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
              + K++  RL VLK       G  IA +D++ R  G++LG++Q G
Sbjct: 688 PKGVPKSALERLRVLKAHTGPGSGLQIAMKDMEMRGIGDVLGLEQHG 734


>gi|322616592|gb|EFY13501.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619893|gb|EFY16767.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622461|gb|EFY19306.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629421|gb|EFY26198.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633907|gb|EFY30645.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636838|gb|EFY33541.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641362|gb|EFY38001.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645127|gb|EFY41656.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652291|gb|EFY48647.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655642|gb|EFY51944.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660947|gb|EFY57177.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665467|gb|EFY61655.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667556|gb|EFY63717.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673650|gb|EFY69752.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677576|gb|EFY73640.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679759|gb|EFY75798.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687232|gb|EFY83204.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194018|gb|EFZ79219.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199427|gb|EFZ84520.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323208844|gb|EFZ93782.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210654|gb|EFZ95533.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217818|gb|EGA02533.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323228043|gb|EGA12184.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229621|gb|EGA13744.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232846|gb|EGA16942.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240118|gb|EGA24162.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242895|gb|EGA26916.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323255555|gb|EGA39314.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261591|gb|EGA45168.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266985|gb|EGA50470.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272089|gb|EGA55503.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 1148

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILSEAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|123442012|ref|YP_001005995.1| transcription-repair coupling factor [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088973|emb|CAL11784.1| transcription-repair coupling factor [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 1148

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q   ++ PF  T  QE AI  +L DM +   M R++ 
Sbjct: 568 LLDIYAQRAAKSGFKFKFDREQYQLFCQSFPFETTPDQEQAINAVLSDMCRPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++  +       + +E+++   
Sbjct: 628 GDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               ++  LE+ A G+  IIIGTH L Q  +++  L L+IVDE+HRFGV+ + ++     
Sbjct: 688 SAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWQDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAIL 803

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N     ++   L     + IAI HG+M + D E VM+ 
Sbjct: 804 REILRGGQVYYLYNDVE-----NIEKATQKLAELVPE--ARIAIGHGQMRERDLERVMND 856

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 916

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 917 PNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965


>gi|260768914|ref|ZP_05877848.1| transcription-repair coupling factor [Vibrio furnissii CIP 102972]
 gi|260616944|gb|EEX42129.1| transcription-repair coupling factor [Vibrio furnissii CIP 102972]
          Length = 1153

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 145/383 (37%), Positives = 213/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  ++ DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 599 GFPFEETDDQAMAINAVMSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  L+ +A G+  I++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKAILQDVADGKVDIVVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L++VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 SDIKFADLGLLVVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 779 IATPPARRMAIKTFV--RQSEDSVIR--EAVLREIMRGGQVYFLHNQVESIDKVAADLEK 834

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           ++           + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 835 LIPE---------ARITVAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANT 885

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   G
Sbjct: 886 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAVKRLEAIASLEDLGAG 945

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 946 FTLATHDLEIRGAGELLGDEQSG 968


>gi|161614554|ref|YP_001588519.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363918|gb|ABX67686.1| hypothetical protein SPAB_02303 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 1148

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|168233095|ref|ZP_02658153.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194470858|ref|ZP_03076842.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194457222|gb|EDX46061.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205332729|gb|EDZ19493.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 1148

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|301067528|ref|YP_003789551.1| transcription-repair coupling factor (superfamily II helicase)
           [Lactobacillus casei str. Zhang]
 gi|300439935|gb|ADK19701.1| Transcription-repair coupling factor (superfamily II helicase)
           [Lactobacillus casei str. Zhang]
          Length = 1174

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 147/431 (34%), Positives = 239/431 (55%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  A  E +A ++  L  +++ +K  G     +  +  K     P+  T  Q 
Sbjct: 567 EWQKTKRKVAARIEDIADELIDLYAKREAEK--GFAFGPDDDLQHKFEAEFPYPETPDQL 624

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + K+I  DM +   M R+L GDVG GKT VAL A   A++ G QA I+ P  ILAQQH+
Sbjct: 625 RSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHF 684

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +K+   +  I V +++        ++ ++ + +G   I++GTH L    + +  L L+
Sbjct: 685 DTMKERFADFPIKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + ++ Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 745 VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 804

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           +T ++  N   I E IER    +  G + +++  ++E+         +ER  S  E    
Sbjct: 805 QTFVMEQNPGVIREAIER---EMERGGQVFYLHNRVED---------MERTVSQLEELVP 852

Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            +S+   HG+M++   E+V+  F +G   +L+ TT+IE G+D+ +A+ +IIENA+H+GL+
Sbjct: 853 DASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLS 912

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+QLRGR+GR   ++    +Y P   L++ +  RL  +K+ TE   GF IA  DL  R 
Sbjct: 913 QLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRG 972

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 973 AGNLLGKQQHG 983


>gi|16764571|ref|NP_460186.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62179736|ref|YP_216153.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167991999|ref|ZP_02573098.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168264274|ref|ZP_02686247.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194446626|ref|YP_002040470.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449956|ref|YP_002045215.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197250617|ref|YP_002146826.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|224584278|ref|YP_002638076.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238910964|ref|ZP_04654801.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16419734|gb|AAL20145.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62127369|gb|AAX65072.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194405289|gb|ACF65511.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408260|gb|ACF68479.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197214320|gb|ACH51717.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205329787|gb|EDZ16551.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205347253|gb|EDZ33884.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|224468805|gb|ACN46635.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261246428|emb|CBG24237.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992993|gb|ACY87878.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157757|emb|CBW17249.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312912204|dbj|BAJ36178.1| transcriptional repressor UlaR [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|322714206|gb|EFZ05777.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323129485|gb|ADX16915.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988107|gb|AEF07090.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 1148

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|116495978|ref|YP_807712.1| transcription-repair coupling factor [Lactobacillus casei ATCC 334]
 gi|116106128|gb|ABJ71270.1| transcription-repair coupling factor [Lactobacillus casei ATCC 334]
          Length = 1174

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 147/431 (34%), Positives = 239/431 (55%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  A  E +A ++  L  +++ +K  G     +  +  K     P+  T  Q 
Sbjct: 567 EWQKTKRKVAARIEDIADELIDLYAKREAEK--GFAFGPDDDLQHKFEAEFPYPETPDQL 624

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + K+I  DM +   M R+L GDVG GKT VAL A   A++ G QA I+ P  ILAQQH+
Sbjct: 625 RSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHF 684

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +K+   +  I V +++        ++ ++ + +G   I++GTH L    + +  L L+
Sbjct: 685 DTMKERFADFPIKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + ++ Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 745 VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 804

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           +T ++  N   I E IER    +  G + +++  ++E+         +ER  S  E    
Sbjct: 805 QTFVMEQNPGVIREAIER---EMERGGQVFYLHNRVED---------MERTVSQLEELVP 852

Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            +S+   HG+M++   E+V+  F +G   +L+ TT+IE G+D+ +A+ +IIENA+H+GL+
Sbjct: 853 DASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLS 912

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+QLRGR+GR   ++    +Y P   L++ +  RL  +K+ TE   GF IA  DL  R 
Sbjct: 913 QLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRG 972

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 973 AGNLLGKQQHG 983


>gi|207857277|ref|YP_002243928.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206709080|emb|CAR33413.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 1148

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|168822320|ref|ZP_02834320.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205341236|gb|EDZ28000.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320086344|emb|CBY96117.1| Transcription-repair-coupling factor TRCF; ATP-dependent helicase
           mfd [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 1148

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|200390896|ref|ZP_03217507.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199603341|gb|EDZ01887.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 1148

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|213860062|ref|ZP_03385766.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 919

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 363 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 422

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 423 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 482

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 483 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 542

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 543 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 593

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 594 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 651

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 652 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDL 711

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 712 GAGFALATHDLEIRGAGELLGEEQSG 737


>gi|332162083|ref|YP_004298660.1| transcription-repair coupling factor [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325666313|gb|ADZ42957.1| transcription-repair coupling factor [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 1148

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q   ++ PF  T  QE AI  +L DM +   M R++ 
Sbjct: 568 LLDIYAQRAAKSGFKFKFDREQYQLFCQSFPFETTPDQEQAINAVLSDMCRPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++  +       + +E+++   
Sbjct: 628 GDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               ++  LE+ A G+  IIIGTH L Q  +++  L L+IVDE+HRFGV+ + ++     
Sbjct: 688 SAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWQDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAIL 803

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N     ++   L     + IAI HG+M + D E VM+ 
Sbjct: 804 REILRGGQVYYLYNDVE-----NIEKATQKLAELVPE--ARIAIGHGQMRERDLERVMND 856

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 916

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 917 PNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965


>gi|318606131|emb|CBY27629.1| transcription-repair coupling factor [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 1148

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q   ++ PF  T  QE AI  +L DM +   M R++ 
Sbjct: 568 LLDIYAQRTAKSGFKFKFDREQYQLFCQSFPFETTPDQEQAINAVLSDMCRPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++  +       + +E+++   
Sbjct: 628 GDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               ++  LE+ A G+  IIIGTH L Q  +++  L L+IVDE+HRFGV+ + ++     
Sbjct: 688 SAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWQDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAIL 803

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N     ++   L     + IAI HG+M + D E VM+ 
Sbjct: 804 REILRGGQVYYLYNDVE-----NIEKATQKLAELVPE--ARIAIGHGQMRERDLERVMND 856

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 916

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 917 PNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965


>gi|268589233|ref|ZP_06123454.1| transcription-repair coupling factor [Providencia rettgeri DSM
           1131]
 gi|291315491|gb|EFE55944.1| transcription-repair coupling factor [Providencia rettgeri DSM
           1131]
          Length = 1147

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 147/411 (35%), Positives = 224/411 (54%), Gaps = 23/411 (5%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q+  +  PF  T  QE AI  +L DM Q   M R++ 
Sbjct: 567 LLDIYAQRAAKAGFAFKHDKQQYQEFCQGFPFETTPDQEVAINAVLSDMCQPLAMDRLVC 626

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   A+    Q  ++ P  +LAQQHY+  K    N  + +E+++   
Sbjct: 627 GDVGFGKTEVAMRAAFLAINNNKQVAVLVPTTLLAQQHYDNFKDRFANWPVRIEMLSRFK 686

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ + + A G+  I+IGTH L Q  + +  L L++VDE+HRFGV+ + ++     
Sbjct: 687 TAKEQQQIITQTAEGKVDILIGTHKLLQSDLVWKDLGLLVVDEEHRFGVRHKERIKAMRA 746

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    + + D+++ R + +L
Sbjct: 747 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VRQYDDLVVR-EAIL 802

Query: 480 SE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
            E   G + Y++   +E  EK ++    +V           +   + HG+M + + E VM
Sbjct: 803 RETLRGGQVYYLYNDVENIEKAKTRLEELVPE---------ARFVVGHGQMRERELERVM 853

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F +    +LI TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   L
Sbjct: 854 TDFHHQRFNVLICTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYL 913

Query: 595 LY-HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           L  HP  ++ +++ RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 914 LTPHPKAMTTDAHKRLEAISSLEDLGAGFALATHDLEIRGAGELLGEDQSG 964


>gi|198242225|ref|YP_002215922.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197936741|gb|ACH74074.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326623670|gb|EGE30015.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 1148

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|168239121|ref|ZP_02664179.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194738344|ref|YP_002114221.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194713846|gb|ACF93067.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288100|gb|EDY27487.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 1148

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|296102868|ref|YP_003613014.1| transcription-repair coupling factor [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057327|gb|ADF62065.1| transcription-repair coupling factor [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 1148

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 214/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    N  + +E+++       + + LE+   G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQAREGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREVLRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   +R   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAADRLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965


>gi|204930833|ref|ZP_03221706.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320292|gb|EDZ05496.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 1148

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|146306624|ref|YP_001187089.1| transcription-repair coupling factor [Pseudomonas mendocina ymp]
 gi|145574825|gb|ABP84357.1| transcription-repair coupling factor [Pseudomonas mendocina ymp]
          Length = 1145

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 141/380 (37%), Positives = 213/380 (56%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++AI  +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 595 GFPFEETPDQQAAIDAVRADMLAGKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAVL 654

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A++++A G+  I+IGTH L Q
Sbjct: 655 VPTTLLAQQHYNSFRDRFADWPVKVEVMSRFKSAKEVEGAVQQLAEGKVDIVIGTHKLLQ 714

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++++ L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 715 DDVKFHNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 774

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  +K  S    +V 
Sbjct: 775 IATPPARRLSVRTFVMEENK-PTIKEALLRELLRGGQVYYLHNDVKTIDKCASELAELVP 833

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I + HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ III
Sbjct: 834 E---------ARIGVGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIII 884

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  +   +D   GF++
Sbjct: 885 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKSMTDDAQKRLEAIAGAQDLGAGFIL 944

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 945 ATHDLEIRGAGELLGDGQSG 964


>gi|55980858|ref|YP_144155.1| transcription-repair coupling factor [Thermus thermophilus HB8]
 gi|55772271|dbj|BAD70712.1| transcription-repair coupling factor [Thermus thermophilus HB8]
          Length = 978

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 147/428 (34%), Positives = 233/428 (54%), Gaps = 19/428 (4%)

Query: 219 EWTSPARERLAYD-ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW   A+ER   D E LAG++ +L  +++       P   E      + +  P+  T  Q
Sbjct: 391 EWQR-AKERARKDVEELAGRLLVLQAKRKATPGRAFPPLPEWD--PLVEKGFPYELTPDQ 447

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           + A++++L+D+   + M R++ GDVG GKT VAL A    V  G Q   + P  +LA+QH
Sbjct: 448 KRALEEVLRDLESPHPMDRLVSGDVGFGKTEVALRAAHRVVGHGAQVAFLVPTTLLAEQH 507

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            +  ++  Q   + V +++   P       L+ +A G   I+IGTH L Q+ +++  L L
Sbjct: 508 GKTFRERFQGLPVRVAVLSRFTPPKEEEAILKGLAEGTVDIVIGTHRLLQEDVRFRDLGL 567

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+HRFGV Q+ ++ +       L ++ATPIPRTL    +G  D+S I   P GRKP
Sbjct: 568 LIVDEEHRFGVAQKERIRELKAEVDTLYLSATPIPRTLYSALVGLKDLSSIQTPPPGRKP 627

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-- 515
           IKT + P + +  V E +   L  G K +++  ++         + +E      E+    
Sbjct: 628 IKTFLAPFDPL-LVREAILFELERGGKVFYVHDRV---------ASIEARRRFLENLVPE 677

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I ++HG+M +   E  M  F  G   +L+ATT+IE G+DV +A+ I+IE A+  GLA 
Sbjct: 678 ARIGVVHGQMPESLIEETMLLFAEGAYDVLLATTIIEAGLDVPEANTILIERADRLGLAT 737

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           L+QLRGRVGR EE +   L + P L++ +  RL+ + +  D   G L+AE D++ R  G 
Sbjct: 738 LYQLRGRVGRREEEAYAYLFHPPRLTEAAEKRLAAIADLSDLGSGHLLAERDMEIRGVGN 797

Query: 633 ILGIKQSG 640
           +LG +Q G
Sbjct: 798 LLGPEQHG 805


>gi|56413798|ref|YP_150873.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362721|ref|YP_002142358.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128055|gb|AAV77561.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094198|emb|CAR59702.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 1148

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEEQSG 965


>gi|227533044|ref|ZP_03963093.1| transcription-repair coupling factor (TRCF) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227189445|gb|EEI69512.1| transcription-repair coupling factor (TRCF) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 1174

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 147/431 (34%), Positives = 239/431 (55%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  A  E +A ++  L  +++ +K  G     +  +  K     P+  T  Q 
Sbjct: 567 EWQKTKRKVAARIEDIADELIDLYAKREAEK--GFAFGPDDDLQHKFEAEFPYPETPDQL 624

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + K+I  DM +   M R+L GDVG GKT VAL A   A++ G QA I+ P  ILAQQH+
Sbjct: 625 RSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHF 684

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +K+   +  I V +++        ++ ++ + +G   I++GTH L    + +  L L+
Sbjct: 685 DTMKERFADFPIKVGLLSRFQTPHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + ++ Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 745 VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 804

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           +T ++  N   I E IER    +  G + +++  ++E+         +ER  S  E    
Sbjct: 805 QTFVMEQNPGVIREAIER---EMERGGQVFYLHNRVED---------MERTVSQLEELVP 852

Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            +S+   HG+M++   E+V+  F +G   +L+ TT+IE G+D+ +A+ +IIENA+H+GL+
Sbjct: 853 DASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLS 912

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+QLRGR+GR   ++    +Y P   L++ +  RL  +K+ TE   GF IA  DL  R 
Sbjct: 913 QLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRG 972

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 973 AGNLLGKQQHG 983


>gi|315180610|gb|ADT87524.1| transcription-repair coupling factor [Vibrio furnissii NCTC 11218]
          Length = 1125

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 145/383 (37%), Positives = 213/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  ++ DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 571 GFPFEETDDQAMAINAVMSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 630

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  L+ +A G+  I++GTH L  
Sbjct: 631 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKAILQDVADGKVDIVVGTHKLLS 690

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L++VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 691 SDIKFADLGLLVVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 750

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  ++   
Sbjct: 751 IATPPARRMAIKTFV--RQSEDSVIR--EAVLREIMRGGQVYFLHNQVESIDKVAADLEK 806

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           ++           + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 807 LIPE---------ARITVAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANT 857

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617
           II++ A+  GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   G
Sbjct: 858 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAVKRLEAIASLEDLGAG 917

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 918 FTLATHDLEIRGAGELLGDEQSG 940


>gi|94499512|ref|ZP_01306049.1| transcription-repair coupling factor [Oceanobacter sp. RED65]
 gi|94428266|gb|EAT13239.1| transcription-repair coupling factor [Oceanobacter sp. RED65]
          Length = 1143

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 141/383 (36%), Positives = 218/383 (56%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q+ AI  ++ DM + N M R++ GDVG GKT VAL A   A + G Q  ++
Sbjct: 593 DFPFEETADQKQAINAVVTDMMKANPMDRLVCGDVGFGKTEVALRAAFLAAQNGKQVAVL 652

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    +  I VE I+     A++  AL+ +  G   I++GTH L Q
Sbjct: 653 VPTTLLAQQHFETFRDRFADWPIKVEGISRFKTGANKTAALKGLEDGTTDIVVGTHKLLQ 712

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L L+I+DE+HRFGVQQ+ ++        +L MTATPIPRTL +   G  D+S 
Sbjct: 713 KDVKFKDLGLLIIDEEHRFGVQQKERIKALRADVDILTMTATPIPRTLNMAMSGVRDLSI 772

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  +KT    + + DE + + + VL E   G + Y++  +++  EK   +   
Sbjct: 773 IATPPARRLAVKTF---VKKWDENLVK-EAVLREILRGGQVYYLHNEVKTIEKTAEDLAK 828

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           ++           + I + HG+M++   ESVM  F +    +L+ TT++E GIDV +A+ 
Sbjct: 829 LIP---------DARIGVAHGQMTERQLESVMSDFYHKRFNVLVCTTIVETGIDVPNANT 879

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---G 617
           I++E A+ FGLAQLHQLRGRVGR    +   L+      ++K++  RL  + + +D   G
Sbjct: 880 IVLERADKFGLAQLHQLRGRVGRSHHQAYAYLMTPIEKKITKDAEKRLDAISHAQDLGAG 939

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F++A  DL+ R  GE+LG +QSG
Sbjct: 940 FMLATHDLEIRGAGELLGEEQSG 962


>gi|227015821|gb|ACP17918.1| putative transcription-repair coupling factor [Pseudomonas
           nitroreducens]
          Length = 1154

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 141/380 (37%), Positives = 216/380 (56%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++AI+ ++ DM  +  M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 603 GFPFEETPDQQTAIEAVVADMLAEKPMDRLVCGDVGFGKTEVAMRAAFVAVHSGRQVAVL 662

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+ ++A G+  I+IGTH L Q
Sbjct: 663 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVEGAVGQLAEGKVDIVIGTHKLLQ 722

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +++  L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 723 DDVKFKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 782

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++   +   + E L   L  G + Y++  +++  EK   +   +V 
Sbjct: 783 IATPPARRLSVRTFVMEEQK-SVIKEALLRELLRGGQVYFLHNEVKTIEKCARDLAELVP 841

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M++ + E VM  F +    +L+A+T+IE GIDV  A+ I+I
Sbjct: 842 E---------ARIGIGHGQMNERELERVMSDFYHKRFNVLVASTIIETGIDVPSANTILI 892

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + N +D   GF++
Sbjct: 893 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQMTPDAEKRLEAIANAQDLGAGFVL 952

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 953 ATHDLEIRGAGELLGEGQSG 972


>gi|332288167|ref|YP_004419019.1| transcription-repair coupling factor [Gallibacterium anatis UMN179]
 gi|330431063|gb|AEC16122.1| transcription-repair coupling factor [Gallibacterium anatis UMN179]
          Length = 1147

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 147/385 (38%), Positives = 217/385 (56%), Gaps = 17/385 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+     PF  T  Q+ AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    
Sbjct: 588 QQFADTFPFEETYDQQMAINAVIGDMCQAKPMDRLVCGDVGFGKTEVAMRAAFLAVMNHK 647

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + VE+++       ++  L  +  G+  I+IGT
Sbjct: 648 QVAVLVPTTLLAQQHYDNFRDRFANLPVNVEVLSRFKTSKEQKNVLTLVKEGKIDILIGT 707

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  + ++ L L+I+DE+HRFGV+Q+ K+ Q  T   +L +TATPIPRTL +   G 
Sbjct: 708 HKLLQGDVDFHDLGLLIIDEEHRFGVRQKEKIKQLRTNIDILTLTATPIPRTLNMAMNGI 767

Query: 443 IDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D+S I+  PA R  IKT +   ++  + E I  L+ +L  G + Y++   +     +  
Sbjct: 768 RDLSIISTPPARRLVIKTFVREQDKRVVREAI--LREIL-RGGQVYYLHNDV-----ATI 819

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           ++  E+   L     + I I HG+M + + E VM  F +    +L+ TT+IE GID+  A
Sbjct: 820 QNCAEKLVELVPE--ARIGIGHGQMRERELERVMTDFYHQRFNVLVCTTIIETGIDIPSA 877

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR---LSVLKNTE 615
           + IIIE A+HFGLAQLHQLRGRVGR    +   LL  P   ++K++  R   LS L N  
Sbjct: 878 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLAPPAKLMTKDAQKRLEALSSLDNLG 937

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSG 640
            GF++A  DL+ R  GE+LG +QSG
Sbjct: 938 AGFVLATHDLEIRGAGELLGDEQSG 962


>gi|307278656|ref|ZP_07559726.1| transcription-repair coupling factor [Enterococcus faecalis TX0860]
 gi|306504716|gb|EFM73916.1| transcription-repair coupling factor [Enterococcus faecalis TX0860]
          Length = 1189

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 818  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 866  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 926  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985

Query: 630  EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G   F+ +   +++  +L   +ARK  K+I  Q
Sbjct: 986  AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025


>gi|327534054|gb|AEA92888.1| transcription-repair coupling factor [Enterococcus faecalis OG1RF]
          Length = 1189

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 818  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 866  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 926  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985

Query: 630  EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G   F+ +   +++  +L   +ARK  K+I  Q
Sbjct: 986  AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025


>gi|307276446|ref|ZP_07557569.1| transcription-repair coupling factor [Enterococcus faecalis TX2134]
 gi|306506926|gb|EFM76073.1| transcription-repair coupling factor [Enterococcus faecalis TX2134]
          Length = 1189

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 818  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 866  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 926  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985

Query: 630  EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G   F+ +   +++  +L   +ARK  K+I  Q
Sbjct: 986  AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025


>gi|312904634|ref|ZP_07763789.1| transcription-repair coupling factor [Enterococcus faecalis TX0635]
 gi|310631986|gb|EFQ15269.1| transcription-repair coupling factor [Enterococcus faecalis TX0635]
 gi|315160777|gb|EFU04794.1| transcription-repair coupling factor [Enterococcus faecalis TX0645]
 gi|315579376|gb|EFU91567.1| transcription-repair coupling factor [Enterococcus faecalis TX0630]
          Length = 1189

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 818  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 866  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 926  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985

Query: 630  EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G   F+ +   +++  +L   +ARK  K+I  Q
Sbjct: 986  AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025


>gi|293382707|ref|ZP_06628632.1| transcription-repair coupling factor [Enterococcus faecalis R712]
 gi|293388111|ref|ZP_06632638.1| transcription-repair coupling factor [Enterococcus faecalis S613]
 gi|307268510|ref|ZP_07549885.1| transcription-repair coupling factor [Enterococcus faecalis TX4248]
 gi|312908603|ref|ZP_07767545.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
            512]
 gi|312909249|ref|ZP_07768106.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
            516]
 gi|291079867|gb|EFE17231.1| transcription-repair coupling factor [Enterococcus faecalis R712]
 gi|291082487|gb|EFE19450.1| transcription-repair coupling factor [Enterococcus faecalis S613]
 gi|306515171|gb|EFM83711.1| transcription-repair coupling factor [Enterococcus faecalis TX4248]
 gi|310625390|gb|EFQ08673.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
            512]
 gi|311290491|gb|EFQ69047.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
            516]
 gi|315032977|gb|EFT44909.1| transcription-repair coupling factor [Enterococcus faecalis TX0017]
 gi|315036610|gb|EFT48542.1| transcription-repair coupling factor [Enterococcus faecalis TX0027]
 gi|315147120|gb|EFT91136.1| transcription-repair coupling factor [Enterococcus faecalis TX4244]
          Length = 1189

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 818  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 866  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 926  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985

Query: 630  EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G   F+ +   +++  +L   +ARK  K+I  Q
Sbjct: 986  AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025


>gi|332534806|ref|ZP_08410631.1| transcription-repair coupling factor [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035770|gb|EGI72256.1| transcription-repair coupling factor [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 1137

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 153/411 (37%), Positives = 224/411 (54%), Gaps = 23/411 (5%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G    ++    ++   + PF  T  Q +AI+ +L DM  K  M R++ 
Sbjct: 557 LLDIYAQRQAKPGNKFTLDAPAYRQFSDSFPFEETDDQRNAIEAVLGDMQSKQAMDRLVC 616

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  I+ P  +LAQQHYE  K    +  I V +++   
Sbjct: 617 GDVGFGKTEVAMRAAFVAVNDDKQVAILVPTTLLAQQHYENFKDRFADFPIEVGVLSRFN 676

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               ++  LE++A+G+  I+IGTH L Q  I++  L L+IVDE+HRFGV+Q+ K+     
Sbjct: 677 STKEQKDTLEKMANGKLDIVIGTHKLIQQDIKFNDLGLLIVDEEHRFGVRQKEKIKALRA 736

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT +    R  E+I   + VL
Sbjct: 737 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV--RQRDVELIR--EAVL 792

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVM 534
            E   G + Y++   +E          +ER       +   +S+   HG+M + + E +M
Sbjct: 793 REIKRGGQVYFLHNNVE---------TIERVAQEISEWVPEASVTTAHGQMREQELEQIM 843

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F +    +L+ TT+IE GIDV  A+ II++ A+  GLAQLHQLRGRVGR    +   L
Sbjct: 844 TDFYHQKYNVLVCTTIIETGIDVPTANTIIMDRADKLGLAQLHQLRGRVGRSHHQAYAYL 903

Query: 595 LYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           L   P  LSK++  RL  +++ ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 904 LTGDPKALSKDASKRLQAIESLEDLGAGFALATHDLEIRGAGELLGDDQSG 954


>gi|315165851|gb|EFU09868.1| transcription-repair coupling factor [Enterococcus faecalis TX1302]
          Length = 1189

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 818  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 866  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 926  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G    +    +++  +L   +ARK  K+I  Q
Sbjct: 986  AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1025


>gi|307274221|ref|ZP_07555429.1| transcription-repair coupling factor [Enterococcus faecalis TX0855]
 gi|306509183|gb|EFM78245.1| transcription-repair coupling factor [Enterococcus faecalis TX0855]
 gi|315151127|gb|EFT95143.1| transcription-repair coupling factor [Enterococcus faecalis TX0012]
          Length = 1189

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 818  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 866  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 926  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985

Query: 630  EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G   F+ +   +++  +L   +ARK  K+I  Q
Sbjct: 986  AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025


>gi|315172643|gb|EFU16660.1| transcription-repair coupling factor [Enterococcus faecalis TX1346]
          Length = 1189

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 818  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 866  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 926  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985

Query: 630  EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G   F+ +   +++  +L   +ARK  K+I  Q
Sbjct: 986  AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025


>gi|312901071|ref|ZP_07760360.1| transcription-repair coupling factor [Enterococcus faecalis TX0470]
 gi|311291817|gb|EFQ70373.1| transcription-repair coupling factor [Enterococcus faecalis TX0470]
          Length = 1189

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 818  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 866  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 926  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G    +    +++  +L   +ARK  K+I  Q
Sbjct: 986  AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1025


>gi|255971757|ref|ZP_05422343.1| transcription-repair coupling factor [Enterococcus faecalis T1]
 gi|257421547|ref|ZP_05598537.1| transcription-repair coupling factor [Enterococcus faecalis X98]
 gi|255962775|gb|EET95251.1| transcription-repair coupling factor [Enterococcus faecalis T1]
 gi|257163371|gb|EEU93331.1| transcription-repair coupling factor [Enterococcus faecalis X98]
 gi|323479470|gb|ADX78909.1| transcription-repair coupling factor [Enterococcus faecalis 62]
          Length = 1179

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 808  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 856  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G    +    +++  +L   +ARK  K+I  Q
Sbjct: 976  AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015


>gi|332184209|gb|AEE26463.1| Transcription-repair coupling factor [Francisella cf. novicida
           3523]
          Length = 1142

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 144/382 (37%), Positives = 210/382 (54%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  AI D+ +DM     M R++ GDVG GKT +A+ A   A +   Q  I+
Sbjct: 593 DFPYEETPDQLLAINDVFKDMISTKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAIL 652

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHY   K    NT + +E+IT +     +++  E +  G   IIIGTH L  
Sbjct: 653 VPTTILAQQHYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFENLKKGTVDIIIGTHKLIS 712

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I +  L L+I+DE+HRFGV Q+ KL        +L M+ATPIPR+L +      D+S 
Sbjct: 713 SKIDFKNLGLLIIDEEHRFGVAQKEKLKALKAEIDILTMSATPIPRSLSMAFSALRDLSI 772

Query: 448 ITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  +KT +     N I E + R  +    G + +++  ++E  +KK+   + +
Sbjct: 773 IASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVETIQKKKEILQEL 829

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
             R           IAI HG+MS+ + + VM  FK+    +L+ TT+IE GID+ +A+ +
Sbjct: 830 FPRL---------RIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPNANTL 880

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618
           IIE+A + GLAQLHQLRGRVGR    +   +L      ++K++  RL  + NTE    GF
Sbjct: 881 IIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEASITKDALKRLEAISNTESLGGGF 940

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GEILG +QSG
Sbjct: 941 TLANHDLEIRGAGEILGEEQSG 962


>gi|254427874|ref|ZP_05041581.1| transcription-repair coupling factor [Alcanivorax sp. DG881]
 gi|196194043|gb|EDX89002.1| transcription-repair coupling factor [Alcanivorax sp. DG881]
          Length = 1159

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 212/379 (55%), Gaps = 17/379 (4%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T  Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ 
Sbjct: 603 FPFEETPDQQAAIASVVADMQSSQPMDRLVCGDVGFGKTEVAMRAAFVAVENQTQVAVLV 662

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQHYE       +  + +E+++       + + L+R+  G+  I++GTH L Q+
Sbjct: 663 PTTLLAQQHYESFTDRFADWPVNIEVLSRFRSAKEKTQVLQRLKEGKVDILVGTHQLLQE 722

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           ++ +  L L+IVDE+HRFGV+ + +L Q      +L +TATPIPRTL +   G  DIS I
Sbjct: 723 TVAFDNLGLIIVDEEHRFGVRHKERLKQMRAECDILTLTATPIPRTLNMAMSGMRDISII 782

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVER 506
              P  R  +KT +   N    + E L   L  G + Y++   I+  EK  ++ R +V  
Sbjct: 783 ATPPQKRLSVKTFVQQHNDT-AIKEALLRELLRGGQVYYLHNDIDTMEKTAADIRKLVP- 840

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                    + + I HG+M + + E+VM  F +    +L++TT+IE GIDV  A+ III+
Sbjct: 841 --------DARVGIAHGQMRERELEAVMSDFYHRRFNVLVSTTIIETGIDVPSANTIIID 892

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621
            A+  GLAQLHQLRGRVGR    +   L+   P  ++K++  RL  ++   D   GF++A
Sbjct: 893 RADKLGLAQLHQLRGRVGRSHHQAYAYLITPSPKVMTKDAIKRLEAIEQATDLGAGFMLA 952

Query: 622 EEDLKQRKEGEILGIKQSG 640
            +D++ R  GE+LG +Q G
Sbjct: 953 SQDMEIRGAGELLGEEQHG 971


>gi|227520043|ref|ZP_03950092.1| transcription-repair coupling factor [Enterococcus faecalis TX0104]
 gi|227072591|gb|EEI10554.1| transcription-repair coupling factor [Enterococcus faecalis TX0104]
          Length = 1189

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 818  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 866  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 926  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985

Query: 630  EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G   F+ +   +++  +L   +ARK  K+I  Q
Sbjct: 986  AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025


>gi|320547719|ref|ZP_08042004.1| transcription-repair coupling factor [Streptococcus equinus ATCC
            9812]
 gi|320447794|gb|EFW88552.1| transcription-repair coupling factor [Streptococcus equinus ATCC
            9812]
          Length = 1165

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 164/469 (34%), Positives = 252/469 (53%), Gaps = 33/469 (7%)

Query: 207  NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
            N +++ R  K  +  S   E +A D+LL     L   R Q K   G   + +  + ++  
Sbjct: 554  NKLNDGRFQKTKQKVSKQVEDIA-DDLLK----LYAERSQMK---GFAFSPDDDLQREFD 605

Query: 267  RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             +  +  T+ Q  +IK+I  DM +   M R+L GDVG GKT VA+ A   AV    Q  +
Sbjct: 606  DDFAYVETEDQLRSIKEIKHDMEEAKPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAV 665

Query: 327  MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            + P  +LAQQH+    +   N  + V +++    +  + + LE++  GQ  IIIGTH L 
Sbjct: 666  LVPTTVLAQQHFTNFSERFDNYPVEVAVLSRFQSKKEQNETLEKLKQGQVDIIIGTHRLL 725

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
               +++  L L+I+DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S
Sbjct: 726  SKDVEFADLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLS 785

Query: 447  KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRS 502
             I   P  R P++T ++  N   I E I R    +  G + +++  +++  ++K S  + 
Sbjct: 786  VIETPPTNRYPVQTYVLETNPGLIREAIIR---EMDRGGQVFYVYNRVDTIDQKVSELQE 842

Query: 503  VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +V           +SI  +HG+MS+I  E+ +  F  G   +L+ATT+IE G+D+ + + 
Sbjct: 843  LVPE---------ASIGFVHGQMSEIQLENTLMDFIEGVYDVLVATTIIETGVDISNVNT 893

Query: 563  IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DG 617
            + IENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   G
Sbjct: 894  LFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKNLTEVSEKRLDAIKGFTELGSG 953

Query: 618  FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAK 664
            F IA  DL  R  G ILG  QSG    +    E++  LLE  IA+K  K
Sbjct: 954  FKIAMRDLSIRGAGNILGASQSGFIDSV--GFEMYSQLLEEAIAKKQGK 1000


>gi|315026785|gb|EFT38717.1| transcription-repair coupling factor [Enterococcus faecalis TX2137]
          Length = 1189

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 818  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 866  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 926  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985

Query: 630  EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G   F+ +   +++  +L   +ARK  K+I  Q
Sbjct: 986  AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025


>gi|262281636|ref|ZP_06059405.1| transcription-repair coupling factor [Streptococcus sp. 2_1_36FAA]
 gi|262262090|gb|EEY80787.1| transcription-repair coupling factor [Streptococcus sp. 2_1_36FAA]
          Length = 1167

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 151/409 (36%), Positives = 230/409 (56%), Gaps = 25/409 (6%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T+ Q  +I++I +DM  K  M R+L GDVG GKT VA+ A   AV    Q  I+
Sbjct: 611  DFPYVETEDQLRSIQEIKKDMESKQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAIL 670

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +LAQQHY   K+   +  + V++++    +A + + LE +  GQ  IIIGTH L  
Sbjct: 671  VPTTVLAQQHYTNFKERFNDFAVNVDVLSRFRTKAEQNETLEGLKKGQVDIIIGTHRLLS 730

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              +++  L L+++DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S 
Sbjct: 731  QDVEFADLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSV 790

Query: 448  ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503
            I   P  R P++T ++  N   I + I R    +  G + Y++  +++  E+K +  + +
Sbjct: 791  IETPPTNRYPVQTYVLESNPTIIRDAILR---EIDRGGQVYYLYNKVDTIEQKVAELKEL 847

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +   N         I  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ +
Sbjct: 848  IPEAN---------IGYVHGQMSEIRLENTLIDFINGEYDVLVTTTIIETGVDIPNANTL 898

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGF 618
             IENA+H GL+ L+QLRGRVGR   I+    +Y P   L++ +  RL  +K  TE   GF
Sbjct: 899  FIENADHMGLSTLYQLRGRVGRSNRIAYAYFMYRPDKNLTEVAEKRLEAIKGFTELGSGF 958

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKH 665
             IA  DL  R  G ILG  QSG    +    E++  LLE  IA+K  K 
Sbjct: 959  KIAMRDLSIRGAGNILGSSQSGFIDSV--GFEMYSQLLEEAIAKKQGKE 1005


>gi|46198841|ref|YP_004508.1| transcription-repair coupling factor [Thermus thermophilus HB27]
 gi|46196464|gb|AAS80881.1| transcription-repair coupling factor [Thermus thermophilus HB27]
          Length = 978

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 147/428 (34%), Positives = 233/428 (54%), Gaps = 19/428 (4%)

Query: 219 EWTSPARERLAYD-ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW   A+E+   D E LAG++ +L  +++       P   E      + +  P+  T  Q
Sbjct: 391 EWQR-AKEKARKDVEELAGRLLVLQAKRKATPGRAFPPLPEWD--PLVEKGFPYELTPDQ 447

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           + A++++L+D+   + M R++ GDVG GKT VAL A    V  G Q   + P  +LA+QH
Sbjct: 448 KRALEEVLRDLESPHPMDRLVSGDVGFGKTEVALRAAHRVVGHGAQVAFLVPTTLLAEQH 507

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            +  ++  Q   + V +++   P       L+ +A G   I+IGTH L Q+ +++  L L
Sbjct: 508 GKTFRERFQGLPVRVAVLSRFTPPKEEEAILKGLAEGTVDIVIGTHRLLQEDVRFRDLGL 567

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+HRFGV Q+ ++ +       L ++ATPIPRTL    +G  D+S I   P GRKP
Sbjct: 568 LIVDEEHRFGVAQKERIRELKAEVDTLYLSATPIPRTLYSALVGLKDLSSIQTPPPGRKP 627

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           IKT + P + +  V E +   L  G K +++  ++   E +     S+V           
Sbjct: 628 IKTFLAPFDPL-LVREAILFELERGGKVFYVHDRVASIEARRRFLESLVP---------E 677

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I ++HG+M +   E  M  F  G   +L+ATT+IE G+DV +A+ I+IE A+  GLA 
Sbjct: 678 ARIGVVHGQMPESLIEETMLLFAEGAYDVLLATTIIEAGLDVPEANTILIERADRLGLAT 737

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           L+QLRGRVGR EE +   L + P L++ +  RL+ + +  D   G L+AE D++ R  G 
Sbjct: 738 LYQLRGRVGRREEEAYAYLFHPPRLTEAAEKRLAAIADLSDLGSGHLLAERDMEIRGVGN 797

Query: 633 ILGIKQSG 640
           +LG +Q G
Sbjct: 798 LLGPEQHG 805


>gi|315126314|ref|YP_004068317.1| transcription-repair ATP-dependent coupling factor
           [Pseudoalteromonas sp. SM9913]
 gi|315014828|gb|ADT68166.1| transcription-repair ATP-dependent coupling factor
           [Pseudoalteromonas sp. SM9913]
          Length = 1157

 Score =  234 bits (596), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 150/411 (36%), Positives = 226/411 (54%), Gaps = 23/411 (5%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G    ++G+  ++   + PF  T  Q +AI+ +L DM  K  M R++ 
Sbjct: 577 LLDIYAQRQAKPGNKFTLDGQAYRQFSDSFPFEETDDQRNAIEAVLGDMQSKQAMDRLVC 636

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  I+ P  +LAQQHY+  K    +  I V +++   
Sbjct: 637 GDVGFGKTEVAMRAAFVAVNDNKQVAILVPTTLLAQQHYDNFKDRFADFPIEVGVLSRFN 696

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ LE++++G+  ++IGTH L Q  I +  L L+IVDE+HRFGV+Q+ K+     
Sbjct: 697 STKEQKETLEKMSNGKLDVVIGTHKLIQQDINFKDLGLLIVDEEHRFGVRQKEKIKALRA 756

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT +    R +E+I   + VL
Sbjct: 757 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV--RQRDEELIR--EAVL 812

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVM 534
            E   G + Y++   +E          +ER       +   +++   HG+M + + E +M
Sbjct: 813 REIKRGGQVYFLHNNVE---------TIERVAQEISEWVPEATVTSAHGQMREQELEQIM 863

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F +    +L+ TT+IE GIDV  A+ II++ A+  GLAQLHQLRGRVGR    +   L
Sbjct: 864 TDFYHQKYNVLVCTTIIETGIDVPTANTIIMDRADKLGLAQLHQLRGRVGRSHHQAYAYL 923

Query: 595 LYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           L   P  LSK++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 924 LTGNPKALSKDAKKRLDAIASLEDLGAGFALATHDLEIRGAGELLGDDQSG 974


>gi|29374898|ref|NP_814051.1| transcription-repair coupling factor [Enterococcus faecalis V583]
 gi|227555903|ref|ZP_03985950.1| transcription-repair coupling factor [Enterococcus faecalis HH22]
 gi|29342356|gb|AAO80122.1| transcription-repair coupling factor [Enterococcus faecalis V583]
 gi|227174960|gb|EEI55932.1| transcription-repair coupling factor [Enterococcus faecalis HH22]
 gi|315573564|gb|EFU85755.1| transcription-repair coupling factor [Enterococcus faecalis TX0309B]
 gi|315582088|gb|EFU94279.1| transcription-repair coupling factor [Enterococcus faecalis TX0309A]
          Length = 1189

 Score =  234 bits (596), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 818  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 866  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 926  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G    +    +++  +L   +ARK  K+I  Q
Sbjct: 986  AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1025


>gi|89094300|ref|ZP_01167241.1| transcription-repair coupling protein Mfd [Oceanospirillum sp.
           MED92]
 gi|89081359|gb|EAR60590.1| transcription-repair coupling protein Mfd [Oceanospirillum sp.
           MED92]
          Length = 1150

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 147/385 (38%), Positives = 217/385 (56%), Gaps = 29/385 (7%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T  Q +AI ++++DM+ K  M R++ GDVG GKT VA+ A   A ++G Q VI+ 
Sbjct: 600 FPFEETPDQAAAIGNVIRDMTAKQPMDRLVCGDVGFGKTEVAMRAAFVAAQSGKQVVILV 659

Query: 329 PIGILAQQHYE-FIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           P  +LAQQHY+ F+ ++     N ++I    TG    A     LE++  G   I++GTH 
Sbjct: 660 PTTLLAQQHYQNFLDRFADWPVNIELISRFRTGKQQTA----ILEKLQSGSVDIVVGTHK 715

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L    I++  L LVI+DE+HRFGVQQ+ +L    +   +L +TATPIPRTL +   G  D
Sbjct: 716 LLSGDIKFNNLGLVIIDEEHRFGVQQKERLKSLRSEVDILTLTATPIPRTLNMAMSGIRD 775

Query: 445 ISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNF 500
           +S I   PA R  +KT +       + E I R    L  G + Y++  +++  EK     
Sbjct: 776 LSIIATPPAKRLSVKTFVRHSDTTLVKEAILR---ELLRGGQVYYLHNEVKSIEKTAEEL 832

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             +V           + I I HG+M + + E VM  F +    +L+ TT+IE GIDV +A
Sbjct: 833 SELVPE---------ARIGIGHGQMRERELEQVMSDFYHKRYNILLCTTIIETGIDVPNA 883

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED-- 616
           + III+ A+ FGLAQLHQLRGRVGR    +   LL  +   ++K++  RL  +++ +D  
Sbjct: 884 NTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPHKKSMTKDAIKRLEAIESADDLG 943

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640
            GF +A  DL+ R  GE+LG +QSG
Sbjct: 944 AGFTLATHDLEIRGAGELLGEEQSG 968


>gi|218710049|ref|YP_002417670.1| transcription-repair coupling factor [Vibrio splendidus LGP32]
 gi|218323068|emb|CAV19245.1| transcription-repair coupling factor [Vibrio splendidus LGP32]
          Length = 1153

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 139/383 (36%), Positives = 213/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  ++ DM Q   M R++ GDVG GKT VA+ A     +   Q  ++
Sbjct: 599 GFPFEETDDQAMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVCTDNSKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  ++ +A G+  I++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKSIMQDVADGKVDILVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +Q+  L L++VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 SDLQFKDLGLLVVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT    +   D+ I R + VL E   G + Y++  Q++  EK   + + 
Sbjct: 779 IATPPARRLAIKTF---VRESDDAIVR-EAVLREIMRGGQVYFLHNQVDTIEKTAESLQK 834

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           ++           + + + HG+M + + E +M+ F +    LL+ TT+IE GIDV  A+ 
Sbjct: 835 LIPE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANT 885

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           I+++ A++ GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   G
Sbjct: 886 ILMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAMTKDAVKRLDAIASLEDLGAG 945

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 946 FTLATHDLEIRGAGELLGDEQSG 968


>gi|257088697|ref|ZP_05583058.1| transcription-repair coupling factor [Enterococcus faecalis CH188]
 gi|256997509|gb|EEU84029.1| transcription-repair coupling factor [Enterococcus faecalis CH188]
          Length = 1179

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 808  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 856  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G    +    +++  +L   +ARK  K+I  Q
Sbjct: 976  AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015


>gi|229550502|ref|ZP_04439227.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
            29200]
 gi|307286964|ref|ZP_07567039.1| transcription-repair coupling factor [Enterococcus faecalis TX0109]
 gi|307290197|ref|ZP_07570115.1| transcription-repair coupling factor [Enterococcus faecalis TX0411]
 gi|229304359|gb|EEN70355.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
            29200]
 gi|306498753|gb|EFM68252.1| transcription-repair coupling factor [Enterococcus faecalis TX0411]
 gi|306501910|gb|EFM71199.1| transcription-repair coupling factor [Enterococcus faecalis TX0109]
 gi|315028825|gb|EFT40757.1| transcription-repair coupling factor [Enterococcus faecalis TX4000]
 gi|315168150|gb|EFU12167.1| transcription-repair coupling factor [Enterococcus faecalis TX1341]
 gi|315171410|gb|EFU15427.1| transcription-repair coupling factor [Enterococcus faecalis TX1342]
          Length = 1189

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 818  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 866  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 926  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985

Query: 630  EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G   F+ +   +++  +L   +ARK  K+I  Q
Sbjct: 986  AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025


>gi|256964180|ref|ZP_05568351.1| transcription-repair coupling factor [Enterococcus faecalis HIP11704]
 gi|256954676|gb|EEU71308.1| transcription-repair coupling factor [Enterococcus faecalis HIP11704]
          Length = 1179

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 808  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 856  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G    +    +++  +L   +ARK  K+I  Q
Sbjct: 976  AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015


>gi|229589088|ref|YP_002871207.1| transcription-repair coupling factor [Pseudomonas fluorescens
           SBW25]
 gi|229360954|emb|CAY47814.1| transcription-repair coupling factor [Pseudomonas fluorescens
           SBW25]
          Length = 1149

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 146/377 (38%), Positives = 210/377 (55%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++ I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P 
Sbjct: 601 FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT 660

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L  D +
Sbjct: 661 TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV 720

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I  
Sbjct: 721 KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT 780

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
            PA R  ++T ++  N+   V E L   L  G + Y++   ++  EK  ++   +V    
Sbjct: 781 PPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPE-- 837

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                  + IAI HG+M + D E VM  F +    +LIA+T+IE GIDV  A+ IIIE A
Sbjct: 838 -------ARIAIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERA 890

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  
Sbjct: 891 DKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATN 950

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  GE+LG  QSG
Sbjct: 951 DLEIRGAGELLGDGQSG 967


>gi|257078484|ref|ZP_05572845.1| transcription-repair coupling factor [Enterococcus faecalis JH1]
 gi|256986514|gb|EEU73816.1| transcription-repair coupling factor [Enterococcus faecalis JH1]
          Length = 1179

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 808  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 856  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G    +    +++  +L   +ARK  K+I  Q
Sbjct: 976  AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015


>gi|255974757|ref|ZP_05425343.1| transcription-repair coupling factor [Enterococcus faecalis T2]
 gi|255967629|gb|EET98251.1| transcription-repair coupling factor [Enterococcus faecalis T2]
          Length = 1179

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 808  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 856  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G    +    +++  +L   +ARK  K+I  Q
Sbjct: 976  AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015


>gi|238762212|ref|ZP_04623184.1| Transcription-repair-coupling factor [Yersinia kristensenii ATCC
           33638]
 gi|238699559|gb|EEP92304.1| Transcription-repair-coupling factor [Yersinia kristensenii ATCC
           33638]
          Length = 1048

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 147/409 (35%), Positives = 222/409 (54%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G    ++ +  Q   ++ PF  T  QE AI  +L DM +   M R++ 
Sbjct: 468 LLDIYAQRAAKSGFKFKLDKEQYQLFCQSFPFETTPDQEQAINAVLSDMCRPLAMDRLVC 527

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++  +       + +E+++   
Sbjct: 528 GDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFR 587

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               ++  L++ A G+  I+IGTH L Q  +++  L L++VDE+HRFGV+ + ++     
Sbjct: 588 SAKEQQVILDQAAEGKVDIVIGTHKLLQSDLRWQDLGLLVVDEEHRFGVRHKERIKAMRA 647

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 648 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAIL 703

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N     +R   L     + IAI HG+M + D E VM+ 
Sbjct: 704 REILRGGQVYYLYNDVE-----NIEKATQRLAELVPE--ARIAIGHGQMRERDLERVMND 756

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 757 FHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 816

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 817 PNPKAMTVDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 865


>gi|256956814|ref|ZP_05560985.1| transcription-repair coupling factor [Enterococcus faecalis DS5]
 gi|256960620|ref|ZP_05564791.1| transcription-repair coupling factor [Enterococcus faecalis Merz96]
 gi|257081545|ref|ZP_05575906.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol]
 gi|294779317|ref|ZP_06744720.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1]
 gi|300861968|ref|ZP_07108048.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD
            Ef11]
 gi|256947310|gb|EEU63942.1| transcription-repair coupling factor [Enterococcus faecalis DS5]
 gi|256951116|gb|EEU67748.1| transcription-repair coupling factor [Enterococcus faecalis Merz96]
 gi|256989575|gb|EEU76877.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol]
 gi|294453603|gb|EFG22002.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1]
 gi|300848493|gb|EFK76250.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD
            Ef11]
          Length = 1179

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 808  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 856  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G    +    +++  +L   +ARK  K+I  Q
Sbjct: 976  AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015


>gi|257084193|ref|ZP_05578554.1| transcription-repair coupling factor [Enterococcus faecalis Fly1]
 gi|256992223|gb|EEU79525.1| transcription-repair coupling factor [Enterococcus faecalis Fly1]
          Length = 1179

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 808  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 856  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G    +    +++  +L   +ARK  K+I  Q
Sbjct: 976  AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015


>gi|256855211|ref|ZP_05560572.1| transcription-repair coupling factor [Enterococcus faecalis T8]
 gi|256709724|gb|EEU24771.1| transcription-repair coupling factor [Enterococcus faecalis T8]
          Length = 1179

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 808  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 856  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G    +    +++  +L   +ARK  K+I  Q
Sbjct: 976  AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015


>gi|315145387|gb|EFT89403.1| transcription-repair coupling factor [Enterococcus faecalis TX2141]
          Length = 1189

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 818  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 866  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 926  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G    +    +++  +L   +ARK  K+I  Q
Sbjct: 986  AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1025


>gi|256762052|ref|ZP_05502632.1| transcription-repair coupling factor [Enterococcus faecalis T3]
 gi|256683303|gb|EEU22998.1| transcription-repair coupling factor [Enterococcus faecalis T3]
          Length = 1179

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 808  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 856  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G    +    +++  +L   +ARK  K+I  Q
Sbjct: 976  AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015


>gi|315158594|gb|EFU02611.1| transcription-repair coupling factor [Enterococcus faecalis TX0312]
          Length = 1189

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 818  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 866  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 926  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985

Query: 630  EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G   F+ +   +++  +L   +ARK  K+I  Q
Sbjct: 986  AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025


>gi|241890049|ref|ZP_04777347.1| transcription-repair coupling factor [Gemella haemolysans ATCC
           10379]
 gi|241863671|gb|EER68055.1| transcription-repair coupling factor [Gemella haemolysans ATCC
           10379]
          Length = 1183

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 139/409 (33%), Positives = 234/409 (57%), Gaps = 19/409 (4%)

Query: 242 LMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L++   K+E+  G   +++G +  +   +  F+PT+ Q  A ++I +DM ++  M R+L 
Sbjct: 574 LIKLYIKRELSSGYAYSIDGSLQAEFEADFSFTPTEDQVKATEEIKRDMEKERPMDRLLC 633

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
           GDVG GKT VA+     AV    Q  ++ P  +LA+QHY+ F+ ++  N  I +E+++  
Sbjct: 634 GDVGFGKTEVAMRVAFKAVTDNKQVAVLVPTTLLAEQHYDNFVNRFA-NFPINIEVVSRF 692

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                  +  +++  G+  II+GTH L  D  +Y  L L+I+DE+ RFGV+ + K+    
Sbjct: 693 KSAKDITEICKKLEEGKIDIIVGTHKLLNDKFKYKDLGLLIIDEEQRFGVKHKEKIKHLK 752

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               VL ++ATPIPRTL ++ +G  D+S I   P  R+PI+T +   N++  + E +   
Sbjct: 753 NTVDVLTLSATPIPRTLHMSLIGIRDLSVIETPPRERQPIQTFVTAQNKM-VIKEAVMNE 811

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           ++ G + +++  ++E        ++ E++  L       +IA  HGRMS  + E++M   
Sbjct: 812 VNRGGQVFYVYNRVE--------TIDEKYLELKRLLPDINIAYAHGRMSQRELENIMTDV 863

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +    +LI+TT+IE GID+ + + +I+E+A+ FGL+QL+QLRGRVGR    +   L+Y 
Sbjct: 864 IDRKYDMLISTTIIETGIDISNVNTLIVEDADRFGLSQLYQLRGRVGRSSREAYAYLMYE 923

Query: 598 P--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGM 641
           P   L++NS  RLS +KN      GF IA +DL  R  G++LG +Q G 
Sbjct: 924 PFKSLTENSEKRLSAIKNFTSLGSGFKIAMQDLSIRGAGDVLGGRQHGF 972


>gi|320540384|ref|ZP_08040034.1| putative transcription-repair coupling factor [Serratia symbiotica
           str. Tucson]
 gi|320029315|gb|EFW11344.1| putative transcription-repair coupling factor [Serratia symbiotica
           str. Tucson]
          Length = 1158

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 146/388 (37%), Positives = 214/388 (55%), Gaps = 23/388 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +  PF  T  Q+ AI  +L DM Q   M R++ GD+G GKT VA+ A   AVE G 
Sbjct: 598 QLFCQTFPFETTLDQQQAINAVLSDMCQPLAMDRLVCGDIGFGKTEVAMRAAFLAVENGK 657

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +       I +++++       +++ L+  A G+  IIIGT
Sbjct: 658 QVAVLVPTTLLAQQHFDNFRDRFATWPIRIDMMSRFRSAKEQQQVLDAAATGKVDIIIGT 717

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  + +  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 718 HKLLQGDLCWRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 777

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKE 497
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E  EK E
Sbjct: 778 RDLSIIATPPARRLAVKTF---VREYDSLMVR-EAILREVLRGGQVYYLYNDVENIEKAE 833

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                +V           + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+
Sbjct: 834 QKLAELVPE---------ARIAIGHGQMRERNLERVMNDFHHQRFNVLVCTTIIETGIDI 884

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE 615
             A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL   P  +S ++  RL+ + + E
Sbjct: 885 ASANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAYLLTPNPQAMSADAQKRLAAIASLE 944

Query: 616 D---GFLIAEEDLKQRKEGEILGIKQSG 640
           D   GF +A  DL+ R  GE+LG  QSG
Sbjct: 945 DLGAGFALATHDLEIRGAGELLGEDQSG 972


>gi|256618332|ref|ZP_05475178.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
            4200]
 gi|256597859|gb|EEU17035.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
            4200]
          Length = 1179

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLLSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 808  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 856  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G    +    +++  +L   +ARK  K+I  Q
Sbjct: 976  AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015


>gi|156741461|ref|YP_001431590.1| transcription-repair coupling factor [Roseiflexus castenholzii DSM
            13941]
 gi|156232789|gb|ABU57572.1| transcription-repair coupling factor [Roseiflexus castenholzii DSM
            13941]
          Length = 1246

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 152/429 (35%), Positives = 233/429 (54%), Gaps = 19/429 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+  A  + LA ++  L  ++Q  +  G   + + +  +++  + P+  T  Q 
Sbjct: 611  DWERAKRKARAAVQDLADELIGLYAQRQLAE--GHAFSPDTEWQRELEASFPYVETPDQL 668

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI D+ +DM Q   M R++ GDVG GKT VAL A   AV+ G Q  ++AP  +L QQHY
Sbjct: 669  KAIIDVKRDMEQPQPMDRLICGDVGFGKTEVALRAAFKAVQDGKQVAVLAPTTVLVQQHY 728

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + VE+I+       +   + R+A G+  +IIGTH L    + +  L L+
Sbjct: 729  DTFSRRMAAFPVRVEMISRFRSAKEQSDIVRRLARGEIDVIIGTHRLLSKDVVFKDLGLL 788

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ + ++ Q  T   V+ +TATPIPRTL +   G  D+S I   P  R PI
Sbjct: 789  VVDEEQRFGVRHKERIKQLRTNVDVITLTATPIPRTLHMALAGIRDLSVIDTPPEDRIPI 848

Query: 459  KTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            KT ++P   N I E I R    L  G + Y++  +++     +   V +R   L     +
Sbjct: 849  KTYVLPYDENLIREAILR---ELDRGGQVYFVHNRVQ-----SIYYVADRLRQLVPE--A 898

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             IA+ HG++ +   E VM  F  G   +L+ TT+IE G+DV +A+ III++A HFGLAQL
Sbjct: 899  RIAVGHGQLDERQLERVMLDFFTGRDDVLVCTTIIESGLDVPNANTIIIDDATHFGLAQL 958

Query: 577  HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            +QLRGRVGRG + +   L Y    P +  +  RL  ++   +   GF IA  DL+ R  G
Sbjct: 959  YQLRGRVGRGTQRAYAYLFYRSERPSTPEAQERLQAIQEATELGAGFRIAMRDLEIRGAG 1018

Query: 632  EILGIKQSG 640
             +LG +QSG
Sbjct: 1019 NLLGAEQSG 1027


>gi|257088020|ref|ZP_05582381.1| transcription-repair coupling factor [Enterococcus faecalis D6]
 gi|256996050|gb|EEU83352.1| transcription-repair coupling factor [Enterococcus faecalis D6]
          Length = 1179

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 808  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 856  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G    +    +++  +L   +ARK  K+I  Q
Sbjct: 976  AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015


>gi|298486416|ref|ZP_07004477.1| Transcription-repair coupling factor [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159044|gb|EFI00104.1| Transcription-repair coupling factor [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 1152

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 601 GFPFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 660

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 661 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 720

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 721 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 780

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 781 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 839

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 840 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 890

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 891 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVL 950

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 951 ATNDLEIRGAGELLGDGQSG 970


>gi|290475839|ref|YP_003468731.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus
           bovienii SS-2004]
 gi|289175164|emb|CBJ81967.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus
           bovienii SS-2004]
          Length = 1146

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 142/387 (36%), Positives = 213/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   ++ PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   A+    
Sbjct: 590 QLFCQSFPFDTTPDQEQAINAVLDDMCQPVAMDRLVCGDVGFGKTEVAMRAAFMAITNNK 649

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       +++ ++  A G+  IIIGT
Sbjct: 650 QVAVLVPTTLLAQQHYDNFRDRFANWPVHLEVLSRFRSAKEQQQVIDMAAEGKVDIIIGT 709

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q+ + +  + L+IVDE+HRFGV+ + ++        VL +TATPIPRTL +   G 
Sbjct: 710 HKLLQNDLCWKDIGLLIVDEEHRFGVRHKERIKAIRADVDVLTLTATPIPRTLNMAMSGM 769

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
            D+S I   PA R  +KT    +   D ++ R  ++  +  G + Y++   +E  EK ++
Sbjct: 770 RDLSIIATPPARRLAVKTF---VREYDSLVVRESILREILRGGQVYYLYNDVENIEKAKN 826

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + I + HG+M + D E VM  F +    +L+ TT+IE GID+ 
Sbjct: 827 RLEELVPE---------ARIVVGHGQMRERDLERVMADFHHQRFNVLVCTTIIETGIDIP 877

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
            A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL   P  ++ ++  RL  + + ED
Sbjct: 878 SANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMTTDAQKRLEAIASLED 937

Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSG 640
              GF +A  DL+ R  GE+LG  QSG
Sbjct: 938 LGAGFALATHDLEIRGAGELLGEDQSG 964


>gi|90579501|ref|ZP_01235310.1| putative transcription-repair coupling factor [Vibrio angustum S14]
 gi|90439075|gb|EAS64257.1| putative transcription-repair coupling factor [Vibrio angustum S14]
          Length = 1153

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 147/430 (34%), Positives = 233/430 (54%), Gaps = 23/430 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+       +A ++  +  +++ K   G+   ++ +   +     P+  T  Q  
Sbjct: 556 WSKARRKAAEKVRDVAAELLDVYAKRELKP--GVKFTLDREAYAEFSAGFPYEETYDQAL 613

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQH+E
Sbjct: 614 AINAVLSDMCQTKVMDRLVCGDVGFGKTEVAMRAAFVAVDNNKQVTVLVPTTLLAQQHFE 673

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    NT + VE+++       +++ L  +  G+  I+IGTH L   S+ Y+ L L+I
Sbjct: 674 NFRDRFANTPVRVEVLSRFKTAKEQKQILADVEEGKIDILIGTHKLLNSSVNYHDLGLLI 733

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 734 VDEEHRFGVRQKEKIKAIRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 793

Query: 460 TVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T    + + D+ + R  V+  +S G + Y++  +++  EK   +   ++           
Sbjct: 794 TF---VRQSDDAVIREAVLREISRGGQVYFLHNEVDSIEKTTEDLAKLIPE--------- 841

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I   HG+M + + E +M  F +    +L+ TT+IE GIDV  A+ II++ A++ GLAQ
Sbjct: 842 ARITFAHGQMRERELEKIMGDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQ 901

Query: 576 LHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF +A  DL+ R  
Sbjct: 902 LHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISSLEDLGAGFTLATHDLEIRGA 961

Query: 631 GEILGIKQSG 640
           GE+LG +QSG
Sbjct: 962 GELLGDEQSG 971


>gi|257418651|ref|ZP_05595645.1| transcription-repair coupling factor [Enterococcus faecalis T11]
 gi|257160479|gb|EEU90439.1| transcription-repair coupling factor [Enterococcus faecalis T11]
          Length = 1179

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P +      ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPD--DAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 808  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 856  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G    +    +++  +L   +ARK  K+I  Q
Sbjct: 976  AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015


>gi|146311285|ref|YP_001176359.1| transcription-repair coupling factor [Enterobacter sp. 638]
 gi|145318161|gb|ABP60308.1| transcription-repair coupling factor [Enterobacter sp. 638]
          Length = 1148

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 214/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRATFLAVENNK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + LE+   G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILEQAREGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREVLRGGQVYYLFNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ++   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKTADKLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ I+IE A+HFGLAQLHQLRGRVGR    +   L+  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIVIERADHFGLAQLHQLRGRVGRSHHQAYAWLMTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965


>gi|229546913|ref|ZP_04435638.1| transcription-repair coupling factor [Enterococcus faecalis TX1322]
 gi|312952657|ref|ZP_07771521.1| transcription-repair coupling factor [Enterococcus faecalis TX0102]
 gi|229307841|gb|EEN73828.1| transcription-repair coupling factor [Enterococcus faecalis TX1322]
 gi|310629445|gb|EFQ12728.1| transcription-repair coupling factor [Enterococcus faecalis TX0102]
 gi|315153559|gb|EFT97575.1| transcription-repair coupling factor [Enterococcus faecalis TX0031]
 gi|315156261|gb|EFU00278.1| transcription-repair coupling factor [Enterococcus faecalis TX0043]
          Length = 1189

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P   +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFP--PDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 818  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 865

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 866  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 925

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 926  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 985

Query: 630  EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G   F+ +   +++  +L   +ARK  K+I  Q
Sbjct: 986  AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 1025


>gi|328956571|ref|YP_004373957.1| transcription-repair coupling factor [Carnobacterium sp. 17-4]
 gi|328672895|gb|AEB28941.1| transcription-repair coupling factor [Carnobacterium sp. 17-4]
          Length = 1173

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 147/419 (35%), Positives = 231/419 (55%), Gaps = 28/419 (6%)

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           DEL    I L   R+Q   E+G   + +    ++     P++ T+ Q S+  +I  DM Q
Sbjct: 587 DEL----IELYAAREQ---EVGYAFSPDDAYQEEFENAFPYTETEDQLSSTAEIKHDMEQ 639

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           K  M R+L GDVG GKT VA+ A+  AV+ G QA  + P  ILAQQHYE + +   +  I
Sbjct: 640 KKPMDRLLVGDVGYGKTEVAMRAIFKAVQEGKQAAFLVPTTILAQQHYETMLQRFADFPI 699

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            + +++    +  + + +  +  GQ  I++GTH +    I++  + L+IVDE+ RFGV+ 
Sbjct: 700 EIGLLSRFRTKKQQNETIAGLKKGQVDIVVGTHRILSKDIEFQDIGLLIVDEEQRFGVKH 759

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RI 468
           + KL Q      VL +TATPIPRTL ++ LG  D+S I   PA R P++T ++  N   I
Sbjct: 760 KEKLKQLKAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPVQTYVMEQNLGAI 819

Query: 469 DEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
            E +ER    ++ G + +++  ++   EKK    + ++           + I   HG+M+
Sbjct: 820 REAVER---EMARGGQVFYLYNRVATIEKKVDELQQLIP---------DARIGYAHGQMT 867

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           +   E+ +  F  G   +L+ TT+IE G+D+ + + + +ENA+H GL+QL+QLRGRVGR 
Sbjct: 868 EGQLENTLLQFIEGEYDMLVTTTIIETGVDMPNVNTLFVENADHMGLSQLYQLRGRVGRS 927

Query: 587 EEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
             ++    LY P   L++ S  RL  +K+ TE   GF IA  DL  R  G +LG +Q G
Sbjct: 928 NRVAYAYFLYQPNKVLNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGAQQHG 986


>gi|261346027|ref|ZP_05973671.1| transcription-repair coupling factor [Providencia rustigianii DSM
           4541]
 gi|282565913|gb|EFB71448.1| transcription-repair coupling factor [Providencia rustigianii DSM
           4541]
          Length = 1148

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 147/411 (35%), Positives = 223/411 (54%), Gaps = 23/411 (5%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q+     PF  T  QE AI  +L DM Q   M R++ 
Sbjct: 567 LLDIYAQRAAKAGFAFKHDKQQYQEFCHGFPFETTADQEMAINAVLSDMCQPIAMDRLVC 626

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   A+    Q  ++ P  +LAQQH++  +    N  + +E+++   
Sbjct: 627 GDVGFGKTEVAMRAAFLAISNNKQVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFR 686

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ +   A G+  I+IGTH L Q+ I +  L L++VDE+HRFGV+ + ++     
Sbjct: 687 TAKEQQQIISDTAEGKVDILIGTHKLLQNDIHWKDLGLLVVDEEHRFGVRHKERIKAMRA 746

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    + + D++I R + +L
Sbjct: 747 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VRQYDDLIVR-EAIL 802

Query: 480 SE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
            E   G + Y++   +E  EK ++   ++V           +   + HG+M + + E VM
Sbjct: 803 RETLRGGQVYYLYNDVENIEKAKARLEALVPE---------ARFVVGHGQMRERELERVM 853

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F +    +LI TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   L
Sbjct: 854 TDFHHQRFNVLICTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYL 913

Query: 595 LY-HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           L  HP  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 914 LTPHPKAMTTDAQKRLEAISSLEDLGAGFALATHDLEIRGAGELLGDDQSG 964


>gi|300870408|ref|YP_003785279.1| transcription-repair coupling factor [Brachyspira pilosicoli 95/1000]
 gi|300688107|gb|ADK30778.1| transcription-repair coupling factor [Brachyspira pilosicoli 95/1000]
          Length = 1196

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 147/403 (36%), Positives = 220/403 (54%), Gaps = 23/403 (5%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T  Q  AI DI  DM     M R++ GDVG GKT VA  A+  AV AG Q  I+ P 
Sbjct: 612  YEETVDQLRAINDIKSDMESDKMMDRLVCGDVGFGKTEVAFRAIFKAVMAGKQCAILCPT 671

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             IL+QQHY   KK  ++  + +E++   +     +K  E +A+G   IIIGTH L  D I
Sbjct: 672  TILSQQHYNNAKKRFEDFPVRIEVLNRFISSRQAKKNKEMLANGSCDIIIGTHMLLSDDI 731

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L L+++DE+ RFGV+ +  L +      VL ++ATPIPRTL +   G  DIS I  
Sbjct: 732  KFKNLGLIVIDEEQRFGVKHKEALKKLRFETDVLTLSATPIPRTLNMALTGIRDISIIET 791

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R P+KT ++  N    V+  ++  L    + +++  +I+          +E F  +
Sbjct: 792  PPLNRIPVKTYVMEFNE-KTVVNAIERELKRNGQVFYLYNRID---------TIESFALM 841

Query: 511  HEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
             +     +SI + HGRM+ I  E +M  F N    +L++TT+IE GID+ +A+ I+I++A
Sbjct: 842  IKKLCPKASICVAHGRMTGIQLEKIMSDFINHKYDILVSTTIIENGIDIPNANTILIDSA 901

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
               GL++L+QLRGRVGR +  +   + Y  +  L++ +Y RL  +    D   GF IA  
Sbjct: 902  NKLGLSELYQLRGRVGRSDREAYAYMFYPENLALTEVAYKRLQAISEHTDLGAGFKIAMR 961

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQP--ELHDSLLEIARKDAK 664
            DL+ R  G ILG +QSGM    I Q   EL+  +LE A  + K
Sbjct: 962  DLEIRGAGNILGKEQSGM----IYQVGYELYTQMLEEATNEYK 1000


>gi|257417623|ref|ZP_05594617.1| transcription-repair coupling factor [Enterococcus faecalis AR01/DG]
 gi|257159451|gb|EEU89411.1| transcription-repair coupling factor [Enterococcus faecalis ARO1/DG]
          Length = 1179

 Score =  233 bits (594), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 153/462 (33%), Positives = 248/462 (53%), Gaps = 27/462 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +K    P +      ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPD--DAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  VIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 808  QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 855

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 856  DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
             L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916  TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
             G +LG +Q G    +    +++  +L   +ARK  K+I  Q
Sbjct: 976  AGNLLGAQQHGFIDSV--GFDMYSQMLSEAVARKQGKNIQDQ 1015


>gi|298492665|ref|YP_003722842.1| transcription-repair coupling factor ['Nostoc azollae' 0708]
 gi|298234583|gb|ADI65719.1| transcription-repair coupling factor ['Nostoc azollae' 0708]
          Length = 1166

 Score =  233 bits (594), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 137/381 (35%), Positives = 215/381 (56%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  A++D+ +DM  +  M R++ GDVG GKT VA+ A+  AV AG Q  ++
Sbjct: 614 SFPYQATTDQLKAVQDVKRDMESERPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVAVL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  IL QQHY  IK+      + V ++        +R   +R+A G+  I++GTH L  
Sbjct: 674 APTTILTQQHYHTIKERFSPYPVNVGLLNRFRSAEEKRNIQKRLATGELDIVVGTHQLLG 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +Q+  L L+++DE+ RFGV Q+ K+    T   VL ++ATPIPRTL ++  G  ++S 
Sbjct: 734 KGVQFRDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSL 793

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
           IT  P  R+PI+T + P+N   E++   ++  L  G + +++ P++E  E+  +N R ++
Sbjct: 794 ITTPPPTRRPIQTHLAPLN--PEIVRSAIRQELDRGGQVFYVVPRVEGIEETTANLREMI 851

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                         AI HG+M + + ES M +F N    +L+ TT+IE G+D+   + I+
Sbjct: 852 P---------GGRFAIAHGQMEESELESTMLTFGNNDADILVCTTIIESGLDIPRVNTIL 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFL 619
           IE+A  FGLAQL+QLRGRVGR    +   L YH    LS  +  RL  ++       G+ 
Sbjct: 903 IEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYHKQRELSDAARLRLRAIQEFTQLGSGYQ 962

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  D++ R  G +LG +QSG
Sbjct: 963 LAMRDMEIRGVGNLLGAEQSG 983


>gi|283833508|ref|ZP_06353249.1| transcription-repair coupling factor [Citrobacter youngae ATCC
           29220]
 gi|291071173|gb|EFE09282.1| transcription-repair coupling factor [Citrobacter youngae ATCC
           29220]
          Length = 1148

 Score =  233 bits (594), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 214/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    N  + +E+++       + + LE++A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQADVKLKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREVLRGGQVYYLFNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   +R   L     + I I HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKTADRLAELVPE--ARIGIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965


>gi|269960991|ref|ZP_06175360.1| transcription-repair coupling factor [Vibrio harveyi 1DA3]
 gi|269834210|gb|EEZ88300.1| transcription-repair coupling factor [Vibrio harveyi 1DA3]
          Length = 1123

 Score =  233 bits (594), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 142/381 (37%), Positives = 212/381 (55%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A +   Q  ++
Sbjct: 569 TFPFEETDDQSMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVL 628

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  L+ +A G+  I++GTH L  
Sbjct: 629 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 688

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 689 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 748

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAYWICPQIE--EKKESNFRSVV 504
           I   PA R  IKT +    R D V+    +  +  G + Y++  Q+E  EK   + + ++
Sbjct: 749 IATPPARRLAIKTFV--RQREDSVVREAALREIMRGGQVYFLHNQVETIEKTAEDLQKLI 806

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + + + HG+M + + E +M+ F +    LL+ TT+IE GIDV  A+ II
Sbjct: 807 PE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTII 857

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFL 619
           ++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF 
Sbjct: 858 MDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAGFT 917

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG +QSG
Sbjct: 918 LATHDLEIRGAGELLGDEQSG 938


>gi|229551616|ref|ZP_04440341.1| transcription-repair coupling factor [Lactobacillus rhamnosus
           LMS2-1]
 gi|229315020|gb|EEN80993.1| transcription-repair coupling factor [Lactobacillus rhamnosus
           LMS2-1]
          Length = 1182

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 149/439 (33%), Positives = 240/439 (54%), Gaps = 23/439 (5%)

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
           N  K    EW    R+  A  E +A ++  L  +++ +K  G     +  + QK     P
Sbjct: 566 NVNKLGGTEWQKTKRKVAARIEDIADELIDLYAKREAEK--GYAFGPDDDLQQKFEDEFP 623

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  + K+I +DM +   M R+L GDVG GKT VAL A   AV+ G Q  I+ P 
Sbjct: 624 YPETPDQLRSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPT 683

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILAQQH++ +K    +  + + +++        +  ++ + +G   I++GTH L    +
Sbjct: 684 TILAQQHFDTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDV 743

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+++DE+ RFGV+ + ++ Q  +   VL +TATPIPRTL ++ LG  D+S I  
Sbjct: 744 AFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIET 803

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R PI+T ++  N   I E IER    +  G + +++  ++E+         +ER  
Sbjct: 804 PPTNRYPIQTFVMEQNPGVIREAIER---EMERGGQVFYLHNRVED---------MERTV 851

Query: 509 SLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           S  E     +SI   HG+M++   E+V+  F +G   +L+ TT+IE G+D+ +A+ +IIE
Sbjct: 852 SQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIE 911

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIA 621
           NA+H+GL+QL+QLRGR+GR   ++    +Y P   L++ +  RL  +K+ TE   GF IA
Sbjct: 912 NADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIA 971

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL  R  G +LG +Q G
Sbjct: 972 MRDLSIRGAGNLLGKQQHG 990


>gi|152969666|ref|YP_001334775.1| transcription-repair coupling factor [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954515|gb|ABR76545.1| transcription-repair ATP-dependent coupling factor [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 1152

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 151/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q      PF  T  Q  AI  +L DM Q   M R++ 
Sbjct: 572 LLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 631

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+  +    N  + +E+++   
Sbjct: 632 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 691

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + + LE+ A G+  I+IGTH L Q  ++   L L+IVDE+HRFGV+ + ++     
Sbjct: 692 SAKEQAQILEQAAEGKIDILIGTHKLLQSEVKLRDLGLLIVDEEHRFGVRHKERIKAMRA 751

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 752 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDALVVR-EAIL 807

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N +   ++   L     + IAI HG+M + + E VM+ 
Sbjct: 808 RETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIAIGHGQMRERELERVMND 860

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 861 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 920

Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            HP  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 921 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 969


>gi|290510825|ref|ZP_06550195.1| transcription-repair coupling factor [Klebsiella sp. 1_1_55]
 gi|289777541|gb|EFD85539.1| transcription-repair coupling factor [Klebsiella sp. 1_1_55]
          Length = 1148

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 151/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q      PF  T  Q  AI  +L DM Q   M R++ 
Sbjct: 568 LLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+  +    N  + +E+++   
Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + + LE+ A G+  I+IGTH L Q  ++   L L+IVDE+HRFGV+ + ++     
Sbjct: 688 SAKEQAQILEQAAEGKIDILIGTHKLLQSEVKLRDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDALVVR-EAIL 803

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N +   ++   L     + IAI HG+M + + E VM+ 
Sbjct: 804 RETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIAIGHGQMRERELERVMND 856

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916

Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            HP  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 917 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965


>gi|330869865|gb|EGH04574.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330986245|gb|EGH84348.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331013175|gb|EGH93231.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 1150

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 599 GFPFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 838 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVL 948

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968


>gi|206576037|ref|YP_002239264.1| transcription-repair coupling factor [Klebsiella pneumoniae 342]
 gi|206565095|gb|ACI06871.1| transcription-repair coupling factor [Klebsiella pneumoniae 342]
          Length = 1148

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 151/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q      PF  T  Q  AI  +L DM Q   M R++ 
Sbjct: 568 LLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+  +    N  + +E+++   
Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + + LE+ A G+  I+IGTH L Q  ++   L L+IVDE+HRFGV+ + ++     
Sbjct: 688 SAKEQAQILEQAAEGKIDILIGTHKLLQSEVKLRDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDALVVR-EAIL 803

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N +   ++   L     + IAI HG+M + + E VM+ 
Sbjct: 804 RETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIAIGHGQMRERELERVMND 856

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916

Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            HP  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 917 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965


>gi|288941951|ref|YP_003444191.1| transcription-repair coupling factor [Allochromatium vinosum DSM
           180]
 gi|288897323|gb|ADC63159.1| transcription-repair coupling factor [Allochromatium vinosum DSM
           180]
          Length = 1160

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 141/381 (37%), Positives = 215/381 (56%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q+ AI+ +L DM+    M R++ GDVG GKT VA+ A   AV +G Q V++ P
Sbjct: 614 PFEETPDQQRAIESVLADMADPKPMDRVVCGDVGFGKTEVAMRAAFMAVHSGRQVVVLVP 673

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQH+E       +  + VE ++       ++  L+ +A G   I++GTH L Q +
Sbjct: 674 TTLLAQQHFENFSDRFADWPVRVESLSRFRTAKEQKAVLDGLADGTVDIVVGTHKLLQPT 733

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L I+DE+HRFGV+ + +L    +   VL +TATPIPRTL +   G  D+S I 
Sbjct: 734 IRFKNLGLAIIDEEHRFGVRHKEQLKNLRSEVDVLTLTATPIPRTLNMAMSGLRDLSIIA 793

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVV 504
             P  R PIKT + P N  D +++  + VL E   G + Y++  ++E  E +     +++
Sbjct: 794 TPPVERHPIKTFVSPWN--DALVQ--EAVLRELKRGGQVYFLHNEVETIENQAQKLEALI 849

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + +A+ HG+M + + E +M  F +    LL+ TT+IE GIDV  A+ I+
Sbjct: 850 PE---------ARVAVAHGQMRERELERIMRDFYHQRSNLLVCTTIIESGIDVPSANTIL 900

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619
           I  A+  GLAQLHQLRGRVGR    +   L+  P   ++ ++  RL  +++ ED   GF 
Sbjct: 901 INRADKLGLAQLHQLRGRVGRSHHRAYAYLITPPTKAMTADAKKRLEAIESMEDLGAGFT 960

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG +QSG
Sbjct: 961 LATHDLEIRGAGELLGDEQSG 981


>gi|289648570|ref|ZP_06479913.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 1150

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 599 GFPFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 838 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVL 948

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968


>gi|330982230|gb|EGH80333.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 1150

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I  +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 599 GFPFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQ 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 838 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVL 948

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968


>gi|320324788|gb|EFW80860.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329153|gb|EFW85150.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 1150

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I  +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 599 GFPFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 838 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVL 948

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968


>gi|288936122|ref|YP_003440181.1| transcription-repair coupling factor [Klebsiella variicola At-22]
 gi|288890831|gb|ADC59149.1| transcription-repair coupling factor [Klebsiella variicola At-22]
          Length = 1148

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 151/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q      PF  T  Q  AI  +L DM Q   M R++ 
Sbjct: 568 LLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+  +    N  + +E+++   
Sbjct: 628 GDVGFGKTEVAMRAAFIAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + + LE+ A G+  I+IGTH L Q  ++   L L+IVDE+HRFGV+ + ++     
Sbjct: 688 SAKEQAQILEQAAEGKIDILIGTHKLLQSEVKLRDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDALVVR-EAIL 803

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N +   ++   L     + IAI HG+M + + E VM+ 
Sbjct: 804 RETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIAIGHGQMRERELERVMND 856

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916

Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            HP  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 917 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965


>gi|325295172|ref|YP_004281686.1| transcription-repair coupling factor [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065620|gb|ADY73627.1| transcription-repair coupling factor [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 1059

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 146/382 (38%), Positives = 213/382 (55%), Gaps = 17/382 (4%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           R  P+ PT  Q  AI+++ +DM  +  M R++ GDVG GKT VA+ A   AV  G Q  +
Sbjct: 530 RRFPYKPTPDQLKAIREVYKDMESEKPMDRLICGDVGFGKTEVAMRAAMKAVTDGRQVAV 589

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  ILA QHY   KK  +   + +E I+    +  +++ LE++ +G+  IIIGTH L 
Sbjct: 590 IVPTTILADQHYRTFKKRFKGFPVKIEAISRFKTKKEQKEILEKLKNGEIDIIIGTHRLT 649

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           QD +++  L L+I+DE+HRFGV+ + KLT+      VL ++ATPIPRTL     G  DIS
Sbjct: 650 QDDVEFKNLGLLIIDEEHRFGVKTKEKLTKIKKNLDVLYLSATPIPRTLYSALSGFRDIS 709

Query: 447 KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            I   P GR+  K V+   +   +   +ER    L    + + +   I+E +    + V 
Sbjct: 710 VIETPPVGRRGTKVVVSKYSDRILKTAVER---ELKRNGQVFIVQNDIDELEPLKIK-VE 765

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           E F ++       + I+HG+M     E VM  F  G  K+LIAT++IE G+D+  A+ +I
Sbjct: 766 EMFPNI------PVDIVHGQMKTEKIEKVMHKFFEGDIKILIATSIIESGLDIPSANTLI 819

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFL 619
           +  AE FGL+QL+QLRGRVGRG E   C LL      L+  +  RL  +K       GF 
Sbjct: 820 VIGAERFGLSQLYQLRGRVGRGIEKGYCYLLTSSKGKLTPEAVKRLEAMKKVSPVGGGFQ 879

Query: 620 IAEEDLKQRKEGEILGIKQSGM 641
           +A +DL+ R  G +LG KQSG 
Sbjct: 880 LAMKDLEIRGAGTLLGPKQSGF 901


>gi|302184811|ref|ZP_07261484.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           syringae 642]
          Length = 1150

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I  +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 599 GFPFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQ 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 838 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVL 948

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968


>gi|218440658|ref|YP_002378987.1| transcription-repair coupling factor [Cyanothece sp. PCC 7424]
 gi|218173386|gb|ACK72119.1| transcription-repair coupling factor [Cyanothece sp. PCC 7424]
          Length = 1168

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 139/386 (36%), Positives = 222/386 (57%), Gaps = 18/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q++  + P+ PT  Q  AI+++ +DM  +  M R++ GDVG GKT VA+ A+  AV +G 
Sbjct: 613 QELEDSFPYQPTPDQIKAIQEVKRDMMNERPMDRLVCGDVGFGKTEVAVRAIFKAVTSGN 672

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q   +AP  IL QQHY  +K+      I + ++      +  R  L+R+A G+  I++G
Sbjct: 673 KQVAFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTPSENRDILQRLATGELDIVVG 732

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH L  + +++  L L+++DE+ RFGV Q+ K+    T   VL +TATPIPRTL ++  G
Sbjct: 733 THQLLSNKVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLTATPIPRTLYMSLSG 792

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499
             ++S IT  P  R+PIKT + P N  D +   ++  L  G + +++ P++E  E+  + 
Sbjct: 793 VREMSLITTPPPSRRPIKTHLTPYNP-DALRTAIRNELDRGGQIFYVVPRVEGIEEVAAE 851

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R ++          T+ IAI HG+MS  + E  M +F NG   +L+ TT+IE G+D+  
Sbjct: 852 IRDMIP---------TARIAIAHGQMSVSELEPTMLAFNNGEADILVCTTIIESGLDIPR 902

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLK---NT 614
            + II+E+A+ FGL+QL+QLRGRVGR    +   L+Y     L++ +  RL  L+     
Sbjct: 903 VNTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLVYPHKAALTETARQRLRALQEFTQL 962

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSG 640
             G+ +A  D++ R  G +LG +QSG
Sbjct: 963 GSGYQLATRDMEIRGVGNLLGAEQSG 988


>gi|237731096|ref|ZP_04561577.1| transcription-repair coupling factor [Citrobacter sp. 30_2]
 gi|226906635|gb|EEH92553.1| transcription-repair coupling factor [Citrobacter sp. 30_2]
          Length = 1148

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 214/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    N  + +E+++       + + LE++A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQADVKLKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDNLVVR-EAILREVLRGGQVYYLFNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   +R   L     + I I HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IQKTADRLAELVPE--ARIGIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965


>gi|199598792|ref|ZP_03212204.1| Transcription-repair coupling factor (superfamily II helicase)
           [Lactobacillus rhamnosus HN001]
 gi|199590297|gb|EDY98391.1| Transcription-repair coupling factor (superfamily II helicase)
           [Lactobacillus rhamnosus HN001]
          Length = 1175

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 149/439 (33%), Positives = 240/439 (54%), Gaps = 23/439 (5%)

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
           N  K    EW    R+  A  E +A ++  L  +++ +K  G     +  + QK     P
Sbjct: 559 NVNKLGGTEWQKTKRKVAARIEDIADELIDLYAKREAEK--GYAFGPDDDLQQKFEDEFP 616

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  + K+I +DM +   M R+L GDVG GKT VAL A   AV+ G Q  I+ P 
Sbjct: 617 YPETPDQLRSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPT 676

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILAQQH++ +K    +  + + +++        +  ++ + +G   I++GTH L    +
Sbjct: 677 TILAQQHFDTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDV 736

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+++DE+ RFGV+ + ++ Q  +   VL +TATPIPRTL ++ LG  D+S I  
Sbjct: 737 AFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIET 796

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R PI+T ++  N   I E IER    +  G + +++  ++E+         +ER  
Sbjct: 797 PPTNRYPIQTFVMEQNPGVIREAIER---EMERGGQVFYLHNRVED---------MERTV 844

Query: 509 SLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           S  E     +SI   HG+M++   E+V+  F +G   +L+ TT+IE G+D+ +A+ +IIE
Sbjct: 845 SQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIE 904

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIA 621
           NA+H+GL+QL+QLRGR+GR   ++    +Y P   L++ +  RL  +K+ TE   GF IA
Sbjct: 905 NADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIA 964

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL  R  G +LG +Q G
Sbjct: 965 MRDLSIRGAGNLLGKQQHG 983


>gi|270490329|ref|ZP_06207403.1| transcription-repair coupling factor [Yersinia pestis KIM D27]
 gi|270338833|gb|EFA49610.1| transcription-repair coupling factor [Yersinia pestis KIM D27]
          Length = 901

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   ++ PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    
Sbjct: 344 QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNK 403

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +       + +E+++       ++  LE+ A G+  I+IGT
Sbjct: 404 QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGT 463

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  + ++ L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 464 HKLLQSDLHWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 523

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 524 RDLSIIATPPARRLAVKTF---VREYDSLVIR-EAILREILRGGQVYYLYNDVE-----N 574

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              V ++   L     + I I HG+M + D E VM+ F +    +L+ TT+IE GID+  
Sbjct: 575 IEKVTQKLAELVPE--ARITIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 632

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+H GLAQLHQLRGRVGR    +   LL   P  +S ++  RL  + + ED 
Sbjct: 633 ANTIIIERADHLGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDL 692

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 693 GAGFALATHDLEIRGAGELLGEDQSG 718


>gi|213026773|ref|ZP_03341220.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 503

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 98  QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 157

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 158 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 217

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 218 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 277

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 278 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 328

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 329 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 386

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 387 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDL 446

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 447 GAGFALATHDLEIRGAGELLGEEQSG 472


>gi|192358851|ref|YP_001982241.1| transcription-repair coupling protein Mfd [Cellvibrio japonicus
            Ueda107]
 gi|190685016|gb|ACE82694.1| transcription-repair coupling protein Mfd [Cellvibrio japonicus
            Ueda107]
          Length = 1184

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 143/383 (37%), Positives = 215/383 (56%), Gaps = 23/383 (6%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + PF  T  Q+ AI+ +++DM     M R++ GDVG GKT VA+ A   A  AG Q  I+
Sbjct: 634  SFPFEETPDQQRAIEAVVKDMLSPKPMDRLVCGDVGFGKTEVAMRAAFVASHAGKQVAIL 693

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            AP  +LAQQHYE +K       I +E+++         + LER+A G+  II+GTH L Q
Sbjct: 694  APTTLLAQQHYESLKDRFAEWPITIEVLSRFRTTKEVNQVLERLAEGKVDIIVGTHKLLQ 753

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              I++  L L+I+DE+HRFGV+Q+ ++        +L +TATPIPRTL ++  G  D+S 
Sbjct: 754  PDIKFKNLGLLIIDEEHRFGVRQKEQIKALRAEIDILTLTATPIPRTLNMSMAGIRDLSI 813

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
            I   PA R  +KT    +   DE + + + +L E   G + Y++  +++  EK     + 
Sbjct: 814  IATPPARRLSVKTF---VRTYDEAVIK-EAILREILRGGQVYYLHNEVDTIEKVARELQE 869

Query: 503  VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            ++           + IA+ HG+M + D E VM  F +    +++ TT+IE GID+  A+ 
Sbjct: 870  LIPE---------ARIAVGHGQMRERDLERVMSDFYHKRFNIMVCTTIIETGIDIPSANT 920

Query: 563  IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---G 617
            III  A+ FGLAQLHQLRGRVGR    +   LL      ++ ++  RL  +   ED   G
Sbjct: 921  IIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPERRAMTDDAVKRLEAISAAEDLGAG 980

Query: 618  FLIAEEDLKQRKEGEILGIKQSG 640
            F +A  D++ R  GE+LG +QSG
Sbjct: 981  FTLATYDMEIRGAGELLGEEQSG 1003


>gi|55821999|ref|YP_140440.1| transcription repair coupling factor [Streptococcus thermophilus
           CNRZ1066]
 gi|55737984|gb|AAV61625.1| transcription repair coupling factor [Streptococcus thermophilus
           CNRZ1066]
          Length = 1168

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 144/379 (37%), Positives = 217/379 (57%), Gaps = 19/379 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           ++ T  Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV  G Q  I+ P 
Sbjct: 612 YAETVDQLRSIKEIKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPT 671

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QHY   K+  +N  + V+ ++    +  + + ++ +A G+  IIIGTH L    +
Sbjct: 672 TVLAHQHYMNFKERFENHAVEVDELSRFRSKKEQNETIKNLAKGRIDIIIGTHRLLSKDV 731

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S I  
Sbjct: 732 KFSDLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSIIET 791

Query: 451 KPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R P++T ++  N   I E I R    +  G + ++I  ++E        ++ ++ +
Sbjct: 792 APTNRYPVQTYVMETNPGLIREAILR---EMDRGGQIFYIYNRVE--------TIDQKVS 840

Query: 509 SLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            LHE    + I  +HG+MS++  E+ +  F NG   +L+ATT+IE GID+ + + ++IEN
Sbjct: 841 ELHELVPEARIGFVHGQMSEVMLENTLLDFLNGDYDILVATTIIETGIDIPNVNTLLIEN 900

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+H GL+ L+QLRGRVGR   I+   L+YHP   L++ S  RL  +K  TE   GF IA 
Sbjct: 901 ADHMGLSTLYQLRGRVGRSNRIAYAYLMYHPDKVLTEVSEKRLDAIKGFTELGSGFKIAM 960

Query: 623 EDLKQRKEGEILGIKQSGM 641
            DL  R  G ILG  QSG 
Sbjct: 961 RDLSIRGAGNILGASQSGF 979


>gi|329999583|ref|ZP_08303456.1| transcription-repair coupling factor [Klebsiella sp. MS 92-3]
 gi|328538286|gb|EGF64428.1| transcription-repair coupling factor [Klebsiella sp. MS 92-3]
          Length = 1126

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 151/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q      PF  T  Q  AI  +L DM Q   M R++ 
Sbjct: 546 LLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 605

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+  +    N  + +E+++   
Sbjct: 606 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 665

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + + LE+ A G+  I+IGTH L Q  ++   L L+IVDE+HRFGV+ + ++     
Sbjct: 666 SAKEQAQILEQAAEGKIDILIGTHKLLQSEVKLRDLGLLIVDEEHRFGVRHKERIKAMRA 725

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 726 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDALVVR-EAIL 781

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N +   ++   L     + IAI HG+M + + E VM+ 
Sbjct: 782 RETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIAIGHGQMRERELERVMND 834

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 835 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 894

Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            HP  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 895 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 943


>gi|330973230|gb|EGH73296.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 1150

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I  +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 599 GFPFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 838 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVL 948

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968


>gi|213583692|ref|ZP_03365518.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 468

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 64  QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 123

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 124 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 183

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 184 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 243

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 244 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 294

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 295 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 352

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED- 616
           A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED 
Sbjct: 353 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDL 412

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 413 GAGFALATHDLEIRGAGELLGEEQSG 438


>gi|71736642|ref|YP_274082.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557195|gb|AAZ36406.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 1150

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I  +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 599 GFPFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 838 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVL 948

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968


>gi|22125678|ref|NP_669101.1| transcription-repair coupling factor [Yersinia pestis KIM 10]
 gi|45441565|ref|NP_993104.1| transcription-repair coupling factor [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807895|ref|YP_651811.1| transcription-repair coupling factor [Yersinia pestis Antiqua]
 gi|108812169|ref|YP_647936.1| transcription-repair coupling factor [Yersinia pestis Nepal516]
 gi|145599106|ref|YP_001163182.1| transcription-repair coupling factor [Yersinia pestis Pestoides F]
 gi|149366410|ref|ZP_01888444.1| transcription-repair coupling factor [Yersinia pestis CA88-4125]
 gi|162421681|ref|YP_001607245.1| transcription-repair coupling factor [Yersinia pestis Angola]
 gi|165925529|ref|ZP_02221361.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938427|ref|ZP_02226984.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008143|ref|ZP_02229041.1| transcription-repair coupling factor [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210634|ref|ZP_02236669.1| transcription-repair coupling factor [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401750|ref|ZP_02307241.1| transcription-repair coupling factor [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421853|ref|ZP_02313606.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426319|ref|ZP_02318072.1| transcription-repair coupling factor [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|218928761|ref|YP_002346636.1| transcription-repair coupling factor [Yersinia pestis CO92]
 gi|229841610|ref|ZP_04461768.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843727|ref|ZP_04463870.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229894469|ref|ZP_04509651.1| transcription-repair coupling factor [Yersinia pestis Pestoides A]
 gi|229902491|ref|ZP_04517610.1| transcription-repair coupling factor [Yersinia pestis Nepal516]
 gi|294504177|ref|YP_003568239.1| transcription-repair coupling factor [Yersinia pestis Z176003]
 gi|21958592|gb|AAM85352.1|AE013781_3 transcription-repair coupling factor [Yersinia pestis KIM 10]
 gi|45436426|gb|AAS61981.1| transcription-repair coupling factor [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108775817|gb|ABG18336.1| transcription-repair coupling factor [Yersinia pestis Nepal516]
 gi|108779808|gb|ABG13866.1| transcription-repair coupling factor [Yersinia pestis Antiqua]
 gi|115347372|emb|CAL20270.1| transcription-repair coupling factor [Yersinia pestis CO92]
 gi|145210802|gb|ABP40209.1| transcription-repair coupling factor [Yersinia pestis Pestoides F]
 gi|149290784|gb|EDM40859.1| transcription-repair coupling factor [Yersinia pestis CA88-4125]
 gi|162354496|gb|ABX88444.1| transcription-repair coupling factor [Yersinia pestis Angola]
 gi|165913542|gb|EDR32162.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922638|gb|EDR39789.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992525|gb|EDR44826.1| transcription-repair coupling factor [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207814|gb|EDR52294.1| transcription-repair coupling factor [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960338|gb|EDR56359.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048855|gb|EDR60263.1| transcription-repair coupling factor [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054674|gb|EDR64478.1| transcription-repair coupling factor [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680537|gb|EEO76634.1| transcription-repair coupling factor [Yersinia pestis Nepal516]
 gi|229689335|gb|EEO81398.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694073|gb|EEO84121.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229703488|gb|EEO90505.1| transcription-repair coupling factor [Yersinia pestis Pestoides A]
 gi|262362294|gb|ACY59015.1| transcription-repair coupling factor [Yersinia pestis D106004]
 gi|294354636|gb|ADE64977.1| transcription-repair coupling factor [Yersinia pestis Z176003]
 gi|320014765|gb|ADV98336.1| transcription-repair coupling factor [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 1148

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   ++ PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    
Sbjct: 591 QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +       + +E+++       ++  LE+ A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  + ++ L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 711 HKLLQSDLHWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 771 RDLSIIATPPARRLAVKTF---VREYDSLVIR-EAILREILRGGQVYYLYNDVE-----N 821

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              V ++   L     + I I HG+M + D E VM+ F +    +L+ TT+IE GID+  
Sbjct: 822 IEKVTQKLAELVPE--ARITIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 879

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+H GLAQLHQLRGRVGR    +   LL   P  +S ++  RL  + + ED 
Sbjct: 880 ANTIIIERADHLGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDL 939

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 940 GAGFALATHDLEIRGAGELLGEDQSG 965


>gi|328473273|gb|EGF44121.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           10329]
          Length = 1153

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/383 (37%), Positives = 215/383 (56%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A +   Q  ++
Sbjct: 599 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  L+ +A G+  I++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +    R + V++  + VL E   G + Y++  Q+E  EK   + + 
Sbjct: 779 IATPPARRLAIKTFV--REREESVVQ--EAVLREIMRGGQVYFLHNQVETIEKTAEDLQK 834

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           ++           + I + HG+M + + E +M+ F +    +L+ TT+IE GIDV  A+ 
Sbjct: 835 LIPE---------ARITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANT 885

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617
           II++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   G
Sbjct: 886 IIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAG 945

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 946 FTLATHDLEIRGAGELLGDEQSG 968


>gi|270284301|ref|ZP_05965889.2| ATP-dependent DNA helicase [Bifidobacterium gallicum DSM 20093]
 gi|270277510|gb|EFA23364.1| ATP-dependent DNA helicase [Bifidobacterium gallicum DSM 20093]
          Length = 852

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 147/376 (39%), Positives = 204/376 (54%), Gaps = 31/376 (8%)

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           Q+ V ++TG M  A RR+ L   A G+  I+I THA F  + Q   L L +VDEQHRFGV
Sbjct: 475 QVPVYLLTGGMKLAERRRVLAAAAGGEPCIVIATHAAFSKTFQAPNLALAVVDEQHRFGV 534

Query: 409 QQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII---P 464
           +QR  L  K    PH+L+MTATPIPRT  +T  GD+DIS++TE P GRKPI+T I+    
Sbjct: 535 EQRETLRAKGERDPHLLVMTATPIPRTAAMTWFGDLDISELTELPGGRKPIRTFIVQEAD 594

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----------------------FRS 502
             R+  +   ++  +  G++AY ICP+I+  +E                          S
Sbjct: 595 ATRMGSMFALIRQRIDAGERAYVICPRIDADEEQPDQGEGDGPQLFDDGEESTPKPPLHS 654

Query: 503 VVERFNSLHE--HFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           V E F  L     F   + A + GR  D  K +VM  F +G   +L+ATTV+EVG+DV  
Sbjct: 655 VEEMFTRLQHLPQFAGVAFARLTGRDDDATKNAVMADFSSGRTPVLVATTVVEVGVDVPQ 714

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           AS I+I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL  ++ T DG  
Sbjct: 715 ASCIVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEDGTVAQERLMAIEGTLDGAQ 774

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRG 678
           IA++DL+ R  G++LG  QSG    L     + D+ L+  AR ++  +L  D DL     
Sbjct: 775 IAQKDLELRGAGDVLGDAQSGGKSSLKLLRVVKDAGLIAQARDESAELLEADHDLHQWP- 833

Query: 679 QSIRILLYLYQYNEAF 694
           Q    +L   + NEAF
Sbjct: 834 QLAGAVLDFTRGNEAF 849



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 4/145 (2%)

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
           A+AF+ IH+P+    F+    A   + ++E    Q ALL+ R   K+        +  + 
Sbjct: 265 AQAFSQIHDPQTVHAFK---DAIGTMRFEEAFICQTALLMSRAAAKQGNAWSCT-DQVLR 320

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++ +  +PFS T  Q+  I  I  DM Q + M R+LQG+VGSGKT+VA+ AM  AV +G 
Sbjct: 321 EQFIEQLPFSLTAGQQLVIDAIAHDMEQDHPMQRLLQGEVGSGKTVVAVAAMLQAVGSGH 380

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN 347
           QAV++AP  +LA+QH   I K  ++
Sbjct: 381 QAVLVAPTQVLAEQHAASIAKMVKD 405


>gi|228476811|ref|ZP_04061459.1| transcription-repair coupling factor [Streptococcus salivarius
           SK126]
 gi|228251548|gb|EEK10685.1| transcription-repair coupling factor [Streptococcus salivarius
           SK126]
          Length = 1168

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 157/443 (35%), Positives = 240/443 (54%), Gaps = 27/443 (6%)

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
           N +++ R  K  +  S   E +A D+LL     L   R Q K   G   + +    +   
Sbjct: 556 NKLNDGRFQKTKQKVSKQVEDIA-DDLLK----LYAERSQLK---GFAFSPDDDNQKDFE 607

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            +  ++ T+ Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV  G Q  I
Sbjct: 608 DDFAYAETEDQLRSIKEIKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAI 667

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  +LA QHY   K+  +N  + V+ ++    +  + + +E +A G+  IIIGTH L 
Sbjct: 668 LVPTTVLAHQHYLNFKERFENHAVEVDELSRFRSKKEQNETIENLAKGRIDIIIGTHRLL 727

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              +++  L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S
Sbjct: 728 SKDVKFSDLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLS 787

Query: 447 KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            I   P  R P++T ++  N   I E I R    +  G + +++  ++E        ++ 
Sbjct: 788 IIETAPTNRYPVQTYVMETNPGLIREAILR---EMDRGGQIFYVYNRVE--------TID 836

Query: 505 ERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           ++ + LHE    + I  +HG+MS++  E+ +  F NG   +L+ATT+IE GID+ + + +
Sbjct: 837 QKVSELHELVPEARIGFVHGQMSEVMLENTLLDFLNGDYDVLVATTIIETGIDISNVNTL 896

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGF 618
            IENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   GF
Sbjct: 897 FIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLDAIKGFTELGSGF 956

Query: 619 LIAEEDLKQRKEGEILGIKQSGM 641
            IA  DL  R  G ILG  QSG 
Sbjct: 957 KIAMRDLSIRGAGNILGASQSGF 979


>gi|30350183|gb|AAP31491.1| putative ATP-dependent DNA helicase [Western X phytoplasma]
          Length = 634

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 192/622 (30%), Positives = 313/622 (50%), Gaps = 64/622 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYI------SQHSSFQLQKRRPYKILLND 96
           +L+FY P  +        I++  ++ I+ + G I      S+  S   +KR  ++IL++D
Sbjct: 28  ELIFYKPKKY-QNFLLSNINQAMDKEIINVIGKIVSEPISSKDDS--DKKRLNFQILIHD 84

Query: 97  GTGEITLLF--FYRKT--EMLKNVFFEGR------KITVTGKIKKLKNRIIMVHPHYIFH 146
                 +LF  FY     ++ KNVF +G+       IT +     LKN+   + P Y   
Sbjct: 85  DVFLDVVLFNKFYLANFLKINKNVFIKGKYNLYNKSITASLISFDLKNKN-KIKPVYGIK 143

Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKK---IIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
           N  D          S+ T L  ++F K    I E LS L           L+K +     
Sbjct: 144 NITD---------RSITTFLK-NIFNKPQLKIKENLSPL----------FLKKYNLIDRK 183

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263
           EA   +H P+  +    T    +R  ++E L   IA  L  ++ K     P+N      +
Sbjct: 184 EALMNLHLPKSQQLLHKT---LKRFKHEEAL--NIAQKLFEEKKKLPFKKPLNYGNYYIK 238

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            I++ IPFS T  Q+  +KDI  D+ Q     R++QGDVGSGKT+   +A  A + A  Q
Sbjct: 239 TIMQKIPFSLTDKQKKIVKDIYSDLKQNYPTKRLIQGDVGSGKTITVFLAAIAVISAKKQ 298

Query: 324 AVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            ++MAP  ILA+QHY  F K + +   I +   +       +      I + +  ++IGT
Sbjct: 299 VLMMAPTEILAKQHYLNFTKLFPEIKTIFITSKSKKKKTLQKA-----IYNNEYQMVIGT 353

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L   + +++ L L+I+DE H+FG   + K + +     VL +TATPIP+TL +   G 
Sbjct: 354 HLL--ANTEFHDLGLIIIDETHKFGTDVKDKTSFQNLQADVLYLTATPIPKTLAVMYFGL 411

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +  S +TE P  +K I T   P    ++++  LK   ++ ++ Y + P I++  +     
Sbjct: 412 LKTSLLTEPPYAKKSIITERFPF---EDIVPLLKENQAKNEQTYIVVPAIKQNAKKFNIE 468

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            ++ F  L E     + ++HG+ ++ ++E +M  F      +L+ TT+IEVGID+ +A+ 
Sbjct: 469 TIKSF--LEEEKIQHLYVLHGKKNNQEQEDIMAGFVKNPQGILLDTTIIEVGIDIPNATT 526

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I  A+ FGL+QLHQLRGRVGR E+ + C L+   P +     RL++L+   +GF ++E
Sbjct: 527 IVILGADRFGLSQLHQLRGRVGRNEKQNYCFLV---PENPTDNQRLNILEQESNGFKLSE 583

Query: 623 EDLKQRKEGEILGIKQSGMPKF 644
            DLK R  G+ +G KQSG  K+
Sbjct: 584 FDLKNRGPGDFVGKKQSGYLKY 605


>gi|66045137|ref|YP_234978.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255844|gb|AAY36940.1| Transcription-repair coupling factor [Pseudomonas syringae pv.
           syringae B728a]
          Length = 1150

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I  +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 599 GFPFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 659 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 838 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVL 948

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968


>gi|258540716|ref|YP_003175215.1| transcription-repair coupling factor [Lactobacillus rhamnosus Lc
           705]
 gi|257152392|emb|CAR91364.1| Transcription-repair coupling factor [Lactobacillus rhamnosus Lc
           705]
          Length = 1175

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 149/439 (33%), Positives = 240/439 (54%), Gaps = 23/439 (5%)

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
           N  K    EW    R+  A  E +A ++  L  +++ +K  G     +  + QK     P
Sbjct: 559 NVNKLGGTEWQKTKRKVAARIEDIADELIDLYAKREAEK--GYAFGPDDDLQQKFEDEFP 616

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  + K+I +DM +   M R+L GDVG GKT VAL A   AV+ G Q  I+ P 
Sbjct: 617 YPETPDQLRSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPT 676

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILAQQH++ +K    +  + + +++        +  ++ + +G   I++GTH L    +
Sbjct: 677 TILAQQHFDTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDV 736

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+++DE+ RFGV+ + ++ Q  +   VL +TATPIPRTL ++ LG  D+S I  
Sbjct: 737 AFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIET 796

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R PI+T ++  N   I E IER    +  G + +++  ++E+         +ER  
Sbjct: 797 PPTNRYPIQTFVMEQNPGVIREAIER---EMERGGQVFYLHNRVED---------MERTV 844

Query: 509 SLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           S  E     +SI   HG+M++   E+V+  F +G   +L+ TT+IE G+D+ +A+ +IIE
Sbjct: 845 SQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIE 904

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIA 621
           NA+H+GL+QL+QLRGR+GR   ++    +Y P   L++ +  RL  +K+ TE   GF IA
Sbjct: 905 NADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIA 964

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL  R  G +LG +Q G
Sbjct: 965 MRDLSIRGAGNLLGKQQHG 983


>gi|260584473|ref|ZP_05852220.1| transcription-repair coupling factor [Granulicatella elegans ATCC
           700633]
 gi|260157991|gb|EEW93060.1| transcription-repair coupling factor [Granulicatella elegans ATCC
           700633]
          Length = 1174

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 146/433 (33%), Positives = 242/433 (55%), Gaps = 27/433 (6%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQ 277
           EW    R+     E +A ++  L  ++  +K      +    + QK   +  P+S T+ Q
Sbjct: 568 EWAKTKRKVETKIEDIADELIELYAKRDAEKGYAFSKDT---VEQKEFEDAFPYSETQDQ 624

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +I++I  DM +   M R+L GDVG GKT VA+ A+  A+  G QA ++ P  ILA+QH
Sbjct: 625 LRSIEEIKADMQKDKPMDRLLVGDVGYGKTEVAMRAVFKALMDGKQAAVLVPTTILAEQH 684

Query: 338 YE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           YE F++++  +    + +++    +  +++ +E +  GQ  ++IGTH +    + +  L 
Sbjct: 685 YENFVQRFA-DYPFKIGLLSRFRTKKEQQETIEGLQKGQVDVVIGTHRILSKDVNFLDLG 743

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L++VDE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P+ R 
Sbjct: 744 LLVVDEEQRFGVKHKERLKQLKSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPSNRY 803

Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
           P++T ++      I + IER    L+ G + +++  ++E  EKK    R +V        
Sbjct: 804 PVQTFVMEQQGITIKDGIER---ELARGGQVFYLYNRVETIEKKADELRQLVPE------ 854

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + + +IHG+MS+   E+++  F  G   +L+ TT+IE G+D+ + + + IENA+H G
Sbjct: 855 ---ARVGVIHGQMSETTLENILYQFIEGEYDVLVTTTIIETGVDIPNVNTLFIENADHMG 911

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQ 627
           L+QL+QLRGRVGR   I+   L+Y P   L++    RL  +++ TE   GF IA  DL  
Sbjct: 912 LSQLYQLRGRVGRSNRIAYAYLMYQPDKTLTEVGEKRLQAMRDFTELGSGFKIAMRDLSI 971

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +Q G
Sbjct: 972 RGAGNLLGKQQHG 984


>gi|19703371|ref|NP_602933.1| transcription-repair coupling factor [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|19713435|gb|AAL94232.1| Transcription-repair coupling factor [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 981

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 224/375 (59%), Gaps = 13/375 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF+ T +Q  AI+D+ +DM     M R++ GDVG GKT VA+ A   AV  G Q +++ P
Sbjct: 452 PFTETPAQSKAIEDVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDGKQVILLVP 511

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHYE   +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D 
Sbjct: 512 TTVLAEQHYERFSERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDD 571

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  + L+I+DE+ +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I 
Sbjct: 572 IKFKDVGLLIIDEEQKFGVKAKEKLKKIKGDIDVLTLTATPIPRTLNLSLLGIRDLSVID 631

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P GR+ I T  I  N+  I E+I  L  +  EG + ++I   + ++ ES  + + E  
Sbjct: 632 TSPEGRQKIHTEYIDNNKNFIKEII--LSEISREG-QVFYIFNSV-KRMESKVKEIRE-- 685

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L E+    ++ IHG+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +IIE 
Sbjct: 686 -LLPEYI--KVSYIHGQMLPRDIKKNIQDFENGNVDVLVATTIIENGIDIENANTMIIEG 742

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDL 625
            E  GL+Q++QLRGR+GR  + S C +L +   +KN+  R   ++  ++  G  +A ED 
Sbjct: 743 VEKLGLSQVYQLRGRIGRSTKKSYCYMLTNENKTKNAKKREESIREFDNLTGIDLAMEDS 802

Query: 626 KQRKEGEILGIKQSG 640
           K R  GEILG KQ G
Sbjct: 803 KIRGVGEILGEKQHG 817


>gi|186685547|ref|YP_001868743.1| transcription-repair coupling factor [Nostoc punctiforme PCC 73102]
 gi|186467999|gb|ACC83800.1| transcription-repair coupling factor [Nostoc punctiforme PCC 73102]
          Length = 1170

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 137/381 (35%), Positives = 215/381 (56%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+ PT  Q  A++D+ +DM     M R++ GDVG GKT VA+ A+  AV AG Q  ++
Sbjct: 618 SFPYQPTTDQLKAVQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAVFKAVTAGKQVALL 677

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  IL QQHY  +K+      + V ++        RR   +R+A G+  +++GT  L  
Sbjct: 678 APTTILTQQHYHTLKERFAPYPVNVGLLNRFRSAEERRDIQKRLATGELDVVVGTQQLLG 737

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             + +  L L++VDE+ RFGV Q+ K+    T   VL ++ATPIPRTL ++  G  ++S 
Sbjct: 738 KGVMFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSL 797

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           IT  P  R+ IKT + PIN  + +   ++  L  G + +++ P+++  E+  +N R V+ 
Sbjct: 798 ITTPPPTRRAIKTHLSPINS-ESIRSAIRQELDRGGQVFYVVPRVDGIEETTANLREVIP 856

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     +  AI HG+M + + ES M +F NG   +L+ TT+IE G+D+   + I+I
Sbjct: 857 ---------GARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILI 907

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLK---NTEDGFL 619
           E+A  FGLAQL+QLRGRVGR   I +   L++P    LS  +  RL  ++       G+ 
Sbjct: 908 EDAHRFGLAQLYQLRGRVGRA-GIQAHAWLFYPKQRQLSDAARQRLRAIQEFTQLGSGYQ 966

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  D++ R  G +LG +QSG
Sbjct: 967 LAMRDMEIRGVGNLLGAEQSG 987


>gi|329577423|gb|EGG58873.1| TRCF domain protein [Enterococcus faecalis TX1467]
          Length = 637

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   R+  +  E +A  + LL   ++ +K    P +      ++     P+S T  Q 
Sbjct: 28  EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPD--DAYQKEFEEAFPYSETDDQL 85

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 86  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 145

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 146 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 205

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 206 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 265

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +T ++  N   I E IER    ++   + +++  +++  E+K    +++V          
Sbjct: 266 QTYVMENNPGAIREAIER---EMARDGQVFYLYNRVDTIERKVEELQALVP--------- 313

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + IA  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 314 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLS 373

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 374 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRG 433

Query: 630 EGEILGIKQSGMPKFLIAQP-ELHDSLLE--IARKDAKHILTQ 669
            G +LG +Q G   F+ +   +++  +L   +ARK  K+I  Q
Sbjct: 434 AGNLLGAQQHG---FIDSVGFDMYSQMLSEAVARKQGKNIQDQ 473


>gi|170720851|ref|YP_001748539.1| transcription-repair coupling factor [Pseudomonas putida W619]
 gi|169758854|gb|ACA72170.1| transcription-repair coupling factor [Pseudomonas putida W619]
          Length = 1149

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/380 (37%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++AI+ +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 598 GFPFEETPDQQNAIEAVRADMLAAKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVL 657

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A   +A G+  I+IGTH L Q
Sbjct: 658 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVASAAADLAEGKIDILIGTHKLLQ 717

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +++  L LV++DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 718 DDVRFKDLGLVVIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 777

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N    V E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 778 IATPPARRLSVRTFVMEQNN-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 836

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ I+I
Sbjct: 837 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVI 887

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL      +S ++  RL  + NT+D   GF++
Sbjct: 888 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPARQKVSADAEKRLEAIANTQDLGAGFVL 947

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 948 ATNDLEIRGAGELLGEGQSG 967


>gi|91793030|ref|YP_562681.1| transcription-repair coupling factor [Shewanella denitrificans
           OS217]
 gi|91715032|gb|ABE54958.1| transcription-repair coupling factor [Shewanella denitrificans
           OS217]
          Length = 1179

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 145/415 (34%), Positives = 228/415 (54%), Gaps = 21/415 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A ++  +  R+Q +   G  + ++     +  +  P+  T  QESAI  +L DM     
Sbjct: 593 VAAELLDVYARRQSRP--GEALAIDADEYAQFAQGFPYEETVDQESAIIAVLNDMQAPTS 650

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQHYE  K    +  + +E
Sbjct: 651 MDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPVEIE 710

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +++       + + L+ ++ G+  I+IGTH L Q   ++  L L+I+DE+HRFGV+Q+ K
Sbjct: 711 VMSRFRSAKEQEQVLQSLSEGKVDIVIGTHKLLQSEAKFVDLGLLIIDEEHRFGVRQKEK 770

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           +        +L +TATPIPRTL +   G  D+S I   PA R  +KT +   ++   + E
Sbjct: 771 IKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYHQA-TIRE 829

Query: 474 RLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
            L   +  G + Y++   +E  EK   + R ++           + +   HG+M + D E
Sbjct: 830 ALLREILRGGQVYYLHNNVETIEKCAQDLRDLLPE---------ARVVTGHGQMRERDLE 880

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            VM  F +    +L+ TT+IE GIDV  A+ I+I+ A+ FGLAQLHQLRGRVGR    + 
Sbjct: 881 KVMADFYHQRFNVLVCTTIIETGIDVPSANTIVIDRADKFGLAQLHQLRGRVGRSHHQAY 940

Query: 592 CILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             ++  PP   +S ++  RL  +   E+   GF++A +DL+ R  GE+LG +QSG
Sbjct: 941 AYMIT-PPIKLISTDARKRLEAIDALEELGAGFMLATQDLEIRGAGELLGDEQSG 994


>gi|55820109|ref|YP_138551.1| transcription repair coupling factor [Streptococcus thermophilus
           LMG 18311]
 gi|55736094|gb|AAV59736.1| transcription repair coupling factor [Streptococcus thermophilus
           LMG 18311]
          Length = 1168

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/379 (37%), Positives = 217/379 (57%), Gaps = 19/379 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           ++ T  Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV  G Q  I+ P 
Sbjct: 612 YAETVDQLRSIKEIKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPT 671

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QHY   K+  +N  + V+ ++    +  + + ++ +A G+  IIIGTH L    +
Sbjct: 672 TVLAHQHYMNFKERFENHAVEVDELSRFRSKKEQNETIKNLAKGRIDIIIGTHRLLSKDV 731

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S I  
Sbjct: 732 KFSDLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSIIET 791

Query: 451 KPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R P++T ++  N   I E I R    +  G + ++I  ++E        ++ ++ +
Sbjct: 792 APTNRYPVQTYVMETNPGLIREAILR---EMDRGGQIFYIYNRVE--------TIDQKVS 840

Query: 509 SLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            LHE    + I  +HG+MS++  E+ +  F NG   +L+ATT+IE GID+ + + ++IEN
Sbjct: 841 ELHELVPEARIGFVHGQMSEVMLENTLLYFLNGDYDILVATTIIETGIDIPNVNTLLIEN 900

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+H GL+ L+QLRGRVGR   I+   L+YHP   L++ S  RL  +K  TE   GF IA 
Sbjct: 901 ADHMGLSTLYQLRGRVGRSNRIAYAYLMYHPDKVLTEVSEKRLDAIKGFTELGSGFKIAM 960

Query: 623 EDLKQRKEGEILGIKQSGM 641
            DL  R  G ILG  QSG 
Sbjct: 961 RDLSIRGAGNILGASQSGF 979


>gi|330954492|gb|EGH54752.1| transcription-repair coupling factor [Pseudomonas syringae Cit 7]
          Length = 912

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I  +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 361 GFPFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 420

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 421 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 480

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 481 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 540

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 541 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 599

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 600 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 650

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 651 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVL 710

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 711 ATNDLEIRGAGELLGDGQSG 730


>gi|262043184|ref|ZP_06016320.1| transcription-repair coupling factor [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039462|gb|EEW40597.1| transcription-repair coupling factor [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 1148

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 151/409 (36%), Positives = 220/409 (53%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q      PF  T  Q  AI  +L DM Q   M R++ 
Sbjct: 568 LLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+  +    N  + +E+ +   
Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMFSRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + + LE+ A G+  I+IGTH L Q  ++   L L+IVDE+HRFGV+ + ++     
Sbjct: 688 SAKEQAQILEQAAEGKIDILIGTHKLLQSEVKLRDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDALVVR-EAIL 803

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N +   ++   L     + IAI HG+M + + E VM+ 
Sbjct: 804 RETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIAIGHGQMRERELERVMND 856

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916

Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            HP  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 917 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965


>gi|281357501|ref|ZP_06243989.1| transcription-repair coupling factor [Victivallis vadensis ATCC
           BAA-548]
 gi|281316104|gb|EFB00130.1| transcription-repair coupling factor [Victivallis vadensis ATCC
           BAA-548]
          Length = 1098

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 144/413 (34%), Positives = 225/413 (54%), Gaps = 20/413 (4%)

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A  + L  MR+     +  P   E K     LR  PF  T  Q  +  +I +DM     M
Sbjct: 527 ADMLRLQAMRQSAPGIVYPPDTAETK---AFLRAFPFRDTPDQSRSTAEIRRDMESPRPM 583

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+L GDVG GKT +A+ A   AV AG Q  I+AP  +LAQQHY   ++        +++
Sbjct: 584 DRLLCGDVGYGKTEIAMRAAFKAVSAGYQVAILAPTTVLAQQHYYSFRERFAAYPYTIDV 643

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           ++     A +   ++++  G   I+IGTH L    +++  L LV++DE+ RFGV+ + +L
Sbjct: 644 LSRFRTAAEQNAIMQKVRSGGIDILIGTHRLCNPDLKFRNLGLVVIDEEQRFGVKHKERL 703

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +      VL M+ATPIPRTL L   G  D+S +   P  R P+KTVI P + + +V + 
Sbjct: 704 RRFRAEVDVLTMSATPIPRTLYLAMAGARDLSTLMTAPKQRLPVKTVIAPEDEM-QVAQA 762

Query: 475 LKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           ++  L+ G + Y++  ++   E+K    R++V           +  A+ HG+M++ + E+
Sbjct: 763 IRAELARGGQVYYLYNRVRTIEEKADKLRALVPE---------AKFAVAHGQMNEHELEA 813

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M SF  G    L+ +T+IE G+DV +A+ IIIE A+ FGLA+L+QLRGRVGR    +  
Sbjct: 814 IMTSFLEGKIDCLVCSTIIESGLDVPNANTIIIERADRFGLAELYQLRGRVGRWTHQAYA 873

Query: 593 ILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
            +L      +S ++  RLS ++   N   GF +A  DL+ R  G +LG +QSG
Sbjct: 874 YMLLPKSQLVSTDARKRLSAIRRCSNLGAGFQLALHDLEIRGSGNLLGSEQSG 926


>gi|218290671|ref|ZP_03494762.1| transcription-repair coupling factor [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239336|gb|EED06534.1| transcription-repair coupling factor [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 1183

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 142/378 (37%), Positives = 213/378 (56%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI +I +DM +   M R+L GDVG GKT VA+ A   AV  G Q  ++ P
Sbjct: 624 PYEETPDQLRAIAEIKRDMEKPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVP 683

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHYE  K+      + +E+++    +   ++ L+ +  G   I+IGTH L Q+S
Sbjct: 684 TTVLAQQHYETFKERFAGFPVKIEMLSRFRTRKETQEVLKGLKEGTIDIVIGTHRLLQNS 743

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +Q+  L L+IVDE+ RFGV  + KL Q       L +TATPIPRTL ++ LG  D+S I 
Sbjct: 744 VQFKDLGLLIVDEEQRFGVTHKEKLKQLRANVDCLTLTATPIPRTLHMSMLGVRDLSIIE 803

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T ++  N   + E IER    L+ G + Y++   ++         + ER 
Sbjct: 804 TPPENRFPVQTYVVEYNEGLVKEAIER---ELARGGQVYFVYNDVQ-----TIHRMAERV 855

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            SL     + +++ HG+M++ + E VM  F  G   +L+ TT+IE G+D+ + + +I+ +
Sbjct: 856 QSLVP--DARVSVAHGQMAEAELERVMLDFLEGEYDVLVTTTIIETGLDIPNVNTLIVYD 913

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+ FGL+QL+QLRGRVGR   I+     Y P   LS+ +  RL+ +K  TE   GF IA 
Sbjct: 914 ADKFGLSQLYQLRGRVGRSNRIAYAYFTYQPAKVLSEVAEKRLAAIKEFTELGSGFKIAM 973

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G +LG +Q G
Sbjct: 974 RDLSIRGAGNLLGAEQHG 991


>gi|167041424|gb|ABZ06176.1| putative TRCF domain protein [uncultured marine microorganism
           HF4000_006O13]
          Length = 1147

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 150/377 (39%), Positives = 207/377 (54%), Gaps = 23/377 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q   I+D+L DM+    M R++ GDVG GKT VAL A       G Q  ++ P  IL
Sbjct: 605 TQDQAKVIEDVLDDMAASKSMDRLVCGDVGFGKTEVALRAAFTCAINGYQVALLVPTTIL 664

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQH+E   +      I + I++      +  +    I  G+A IIIGTHAL  D + Y 
Sbjct: 665 AQQHFETFNERFSEWPIAINILSRLQTSKNNNQVRTDIEKGKADIIIGTHALLSDKVVYK 724

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DISKITEKP 452
            L LVIVDE+HRFGV+ + KL         L +TATPIPRTL + ++G++ DIS I   P
Sbjct: 725 NLGLVIVDEEHRFGVRHKEKLKALRKDVDYLALTATPIPRTLNM-AIGELKDISMIATPP 783

Query: 453 AGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
            GR P+KT I   ++  I E  +R    +S G +  ++  +I+  E      R ++    
Sbjct: 784 EGRIPVKTYISQWDKSLIHEACQR---EISRGGQVLFVHNRIDDIENMAETIRQIMP--- 837

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   S+ I HGRM +   E VM  F N    +L+AT++IE G+D+ +A+ III  A
Sbjct: 838 ------VGSLEIAHGRMKERSLERVMMKFYNNEFDVLLATSIIESGLDIPNANTIIINRA 891

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLAQLHQLRGRVGR E  S   L+  P   L+     RL  ++  ED   GF++A  
Sbjct: 892 DRFGLAQLHQLRGRVGRSERQSYAYLMIPPKHTLTNEGRQRLEAIEAIEDLGVGFILATH 951

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  GEILG +QSG
Sbjct: 952 DLEIRGAGEILGDEQSG 968


>gi|153837338|ref|ZP_01990005.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           AQ3810]
 gi|149749369|gb|EDM60142.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           AQ3810]
          Length = 1153

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 144/383 (37%), Positives = 214/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A +   Q  ++
Sbjct: 599 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  L+ +A G+  I++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +    R + V+   + VL E   G + Y++  Q+E  EK   + + 
Sbjct: 779 IATPPARRLAIKTFV--REREESVVR--EAVLREIMRGGQVYFLHNQVETIEKTAEDLQK 834

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           ++           + I + HG+M + + E +M+ F +    +L+ TT+IE GIDV  A+ 
Sbjct: 835 LIPE---------ARITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANT 885

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617
           II++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   G
Sbjct: 886 IIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAG 945

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 946 FTLATHDLEIRGAGELLGDEQSG 968


>gi|294463243|gb|ADE77157.1| unknown [Picea sitchensis]
          Length = 394

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 207/373 (55%), Gaps = 37/373 (9%)

Query: 327 MAPIGILAQQHYE----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           M P  +LA QHYE     +++  ++ +  V  +TG+ P    R   + +  G   +++GT
Sbjct: 1   MVPTELLATQHYENIISMLERINKDDRPSVAFLTGSTPLKETRLIRKGLEMGDIALVVGT 60

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----------------------- 419
           H LF +S+ +  L   ++DEQHRFGV+Q+ + + KA                        
Sbjct: 61  HKLFSESVNFASLCFAVIDEQHRFGVEQKGRFSSKACTVMDKSGANGIKLEDGQLVANKT 120

Query: 420 --APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERL 475
             APHVL+M+ATPIPRTL LT  G++ +SKI E P GR P+KT+ +  N   + +  + +
Sbjct: 121 FFAPHVLVMSATPIPRTLALTLHGNMSLSKINELPPGRIPVKTLALHGNTKGLTKTYQMV 180

Query: 476 KVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +  L  G + + + P I+E ++     +       + + F      ++HGRM   +KE  
Sbjct: 181 QKELDSGGRVFLVYPAIDESEQLPELHAAAAEIKKISKVFKGYKCGLLHGRMKTTEKEKA 240

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  FK G  ++L++T V+EVGID+ +A++++I NAE FG++QLHQ RGRVGRG   S+CI
Sbjct: 241 IQQFKEGKTQILLSTQVVEVGIDIPEATMMVIMNAERFGISQLHQFRGRVGRGTGKSTCI 300

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELH 652
           L+     S     RL +L+ + DGF +AE DL  R  G +LG +QSG +P+F IA+ +  
Sbjct: 301 LVSS---SAVGLPRLKILQQSMDGFELAEADLHLRGPGSLLGTRQSGHLPEFSIARLQTD 357

Query: 653 DSLLEIARKDAKH 665
             +LE A   A H
Sbjct: 358 GDVLEKAHFAALH 370


>gi|258510200|ref|YP_003183634.1| transcription-repair coupling factor [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257476926|gb|ACV57245.1| transcription-repair coupling factor [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 1183

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 142/378 (37%), Positives = 213/378 (56%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI +I +DM +   M R+L GDVG GKT VA+ A   AV  G Q  ++ P
Sbjct: 624 PYEETPDQLRAIAEIKRDMEKPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVP 683

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHYE  K+      + +E+++    +   ++ L+ +  G   I+IGTH L Q+S
Sbjct: 684 TTVLAQQHYETFKERFAGFPVKIEMLSRFRTRKETQEVLKGLKEGTIDIVIGTHRLLQNS 743

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +Q+  L L+IVDE+ RFGV  + KL Q       L +TATPIPRTL ++ LG  D+S I 
Sbjct: 744 VQFKDLGLLIVDEEQRFGVTHKEKLKQLRANVDCLTLTATPIPRTLHMSMLGVRDLSIIE 803

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T ++  N   + E IER    L+ G + Y++   ++         + ER 
Sbjct: 804 TPPENRFPVQTYVVEYNEGLVKEAIER---ELARGGQVYFVYNDVQ-----TIHRMAERV 855

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            SL     + +++ HG+M++ + E VM  F  G   +L+ TT+IE G+D+ + + +I+ +
Sbjct: 856 QSLVP--DARVSVAHGQMAEAELERVMLDFLEGEYDVLVTTTIIETGLDIPNVNTLIVYD 913

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+ FGL+QL+QLRGRVGR   I+     Y P   LS+ +  RL+ +K  TE   GF IA 
Sbjct: 914 ADKFGLSQLYQLRGRVGRSNRIAYAYFTYQPAKVLSEVAEKRLAAIKEFTELGSGFKIAM 973

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G +LG +Q G
Sbjct: 974 RDLSIRGAGNLLGAEQHG 991


>gi|70727507|ref|YP_254423.1| transcription-repair coupling factor [Staphylococcus haemolyticus
            JCSC1435]
 gi|123748600|sp|Q4L3G0|MFD_STAHJ RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|68448233|dbj|BAE05817.1| transcription-repair coupling factor [Staphylococcus haemolyticus
            JCSC1435]
          Length = 1169

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 153/418 (36%), Positives = 231/418 (55%), Gaps = 23/418 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  +I +I  DM ++  M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 615  DFPYELTPDQAKSIDEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 674

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE + +  Q+  + +E+I+        ++  E +  G   I++GTH L  
Sbjct: 675  VPTTILAQQHYETLIERMQDFPVQIELISRFRSTKEVKETKEGLKSGYVDIVVGTHKLLG 734

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              I Y  L L+IVDE+ RFGV+ + ++    T   VL +TATPIPRTL ++ LG  D+S 
Sbjct: 735  KDIHYKDLGLLIVDEEQRFGVRHKERIKTMKTNVDVLTLTATPIPRTLHMSMLGVRDLSV 794

Query: 448  ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 795  IETPPENRFPVQTYVLEQNSNFIKEALER---ELSRDGQVFYLYNRVQ--------SIYE 843

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L      ++IA+ HG+M++ D E  M SF NG   +L+ TT+IE G+DV +A+ +I
Sbjct: 844  KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINGEFDILVTTTIIETGVDVPNANTLI 903

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFL 619
            IE A+ FGL+QL+QLRGRVGR   I     L+  +  L++ +  RL  +K  TE   GF 
Sbjct: 904  IEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHSANKVLTETAEERLQAIKEFTELGSGFK 963

Query: 620  IAEEDLKQRKEGEILGIKQSGMPKFLIAQP-ELHDSLLEIARKDAKHILTQDPDLTSV 676
            IA  DL  R  G +LG +Q G   F+ +   +L+  +LE A  + + I  ++PD   V
Sbjct: 964  IAMRDLNIRGAGNLLGKQQHG---FIDSVGFDLYSQMLEEAVNEKRGIKEEEPDAPEV 1018


>gi|28897749|ref|NP_797354.1| transcription-repair coupling factor [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363824|ref|ZP_05776579.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           K5030]
 gi|260876916|ref|ZP_05889271.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           AN-5034]
 gi|260897942|ref|ZP_05906438.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           Peru-466]
 gi|260903477|ref|ZP_05911872.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           AQ4037]
 gi|28805962|dbj|BAC59238.1| transcription-repair coupling factor [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085487|gb|EFO35182.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           Peru-466]
 gi|308093632|gb|EFO43327.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           AN-5034]
 gi|308110343|gb|EFO47883.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           AQ4037]
 gi|308113858|gb|EFO51398.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           K5030]
          Length = 1153

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 144/383 (37%), Positives = 214/383 (55%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A +   Q  ++
Sbjct: 599 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  L+ +A G+  I++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  IKT +    R + V+   + VL E   G + Y++  Q+E  EK   + + 
Sbjct: 779 IATPPARRLAIKTFV--REREESVVR--EAVLREIMRGGQVYFLHNQVETIEKTAEDLQK 834

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           ++           + I + HG+M + + E +M+ F +    +L+ TT+IE GIDV  A+ 
Sbjct: 835 LIPE---------ARITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANT 885

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---G 617
           II++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   G
Sbjct: 886 IIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAG 945

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL+ R  GE+LG +QSG
Sbjct: 946 FTLATHDLEIRGAGELLGDEQSG 968


>gi|269967617|ref|ZP_06181667.1| transcription-repair coupling factor [Vibrio alginolyticus 40B]
 gi|269827704|gb|EEZ81988.1| transcription-repair coupling factor [Vibrio alginolyticus 40B]
          Length = 1153

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 214/382 (56%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A +   Q  ++
Sbjct: 599 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  L+ +A G+  I++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  IKT    + + +E + R  V+  +  G + Y++  Q+E  EK   + + +
Sbjct: 779 IATPPARRLAIKTF---VRQKEEPVVREAVLREIMRGGQVYFLHNQVETIEKTAEDLQKL 835

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +           + I + HG+M + + E +M+ F +    +L+ TT+IE GIDV  A+ I
Sbjct: 836 IPE---------ARITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTI 886

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618
           I++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF
Sbjct: 887 IMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGF 946

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 947 TLATHDLEIRGAGELLGDEQSG 968


>gi|19745206|ref|NP_606342.1| transcription-repair coupling factor [Streptococcus pyogenes
            MGAS8232]
 gi|19747295|gb|AAL96841.1| putative transcription-repair coupling factor [Streptococcus pyogenes
            MGAS8232]
          Length = 1167

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 241/441 (54%), Gaps = 25/441 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  +  ++ G   + +  + +    +  F  T+ Q  +IK+I  DM     M R+L 
Sbjct: 579  LLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLV 638

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV    Q V++ P  +LAQQHYE  K   +N  + V++++   
Sbjct: 639  GDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFR 698

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             +  + + LER+  GQ  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +  T
Sbjct: 699  SKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKT 758

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E I R   
Sbjct: 759  KVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIR--- 815

Query: 478  VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +  G + +++  +++  +KK +  + +V           +SI  +HG+MS+I  E+ + 
Sbjct: 816  EMDRGGQVFYVYNKVDTIDKKVAELQELVPE---------ASIGFVHGQMSEIQLENTLI 866

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             F NG   +L+ATT+IE G+D+ + + + IENA+H GL+ L+QLRGRVGR   I+   L+
Sbjct: 867  DFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLM 926

Query: 596  YHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            Y P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E
Sbjct: 927  YRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFE 984

Query: 651  LHDSLLE--IARKDAKHILTQ 669
            ++  LLE  IA K  K  + Q
Sbjct: 985  MYSQLLEQAIASKQGKTTVRQ 1005


>gi|289624077|ref|ZP_06457031.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 571

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 20  GFPFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 80  VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 139

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 140 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 199

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 200 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 258

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 259 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 309

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 310 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVL 369

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 370 ATNDLEIRGAGELLGDGQSG 389


>gi|254229022|ref|ZP_04922443.1| transcription-repair coupling factor [Vibrio sp. Ex25]
 gi|262394765|ref|YP_003286619.1| transcription-repair coupling factor [Vibrio sp. Ex25]
 gi|151938490|gb|EDN57327.1| transcription-repair coupling factor [Vibrio sp. Ex25]
 gi|262338359|gb|ACY52154.1| transcription-repair coupling factor [Vibrio sp. Ex25]
          Length = 1153

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 214/382 (56%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A +   Q  ++
Sbjct: 599 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  L+ +A G+  I++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  IKT    + + +E + R  V+  +  G + Y++  Q+E  EK   + + +
Sbjct: 779 IATPPARRLAIKTF---VRQREESVVREAVLREIMRGGQVYFLHNQVETIEKTAEDLQKL 835

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +           + I + HG+M + + E +M+ F +    +L+ TT+IE GIDV  A+ I
Sbjct: 836 IPE---------ARITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTI 886

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618
           I++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF
Sbjct: 887 IMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGF 946

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 947 TLATHDLEIRGAGELLGDEQSG 968


>gi|269102431|ref|ZP_06155128.1| transcription-repair coupling factor [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162329|gb|EEZ40825.1| transcription-repair coupling factor [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 1153

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 148/412 (35%), Positives = 225/412 (54%), Gaps = 19/412 (4%)

Query: 238 IALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           +A  L+    K+E+  G    ++ +         PF  T  Q  AI  +L DM Q   M 
Sbjct: 571 VAAELLDVYAKRELKPGFKFKLDREAYADFCTGFPFEETHDQALAINMVLSDMCQTKVMD 630

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQH+E  +    NT I VE++
Sbjct: 631 RLVCGDVGFGKTEVAMRAAFVAVDNNKQVTVLVPTTLLAQQHFENFRDRFANTPIRVEVL 690

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +       +++ L  +  G+  I+IGTH L   +++Y+ L L+IVDE+HRFGV+Q+ K+ 
Sbjct: 691 SRFKTAKEQKQILADVEEGKIDILIGTHKLLNSTVKYHDLGLLIVDEEHRFGVRQKEKIK 750

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                  +L +TATPIPRTL +   G  D+S I   PA R  IKT    +   D+ I R 
Sbjct: 751 AIRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTF---VREKDDAIVRE 807

Query: 476 KVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            ++  ++ G + Y++  +++          VE  + L     + I   HG+M + + E +
Sbjct: 808 AILREINRGGQVYFLHNEVD-----TIEKTVEDISKLVPE--ARITFAHGQMRERELERI 860

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +    +L+ TT+IE GIDV  A+ II++ A++ GLAQLHQLRGRVGR    +   
Sbjct: 861 MSDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQLRGRVGRSHHQAYAY 920

Query: 594 LLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           LL  HP  ++K++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG
Sbjct: 921 LLTPHPKRMTKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSG 972


>gi|167468531|ref|ZP_02333235.1| transcription-repair coupling factor [Yersinia pestis FV-1]
          Length = 776

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   ++ PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    
Sbjct: 219 QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNK 278

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +       + +E+++       ++  LE+ A G+  I+IGT
Sbjct: 279 QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGT 338

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  + ++ L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 339 HKLLQSDLHWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 398

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 399 RDLSIIATPPARRLAVKTF---VREYDSLVIR-EAILREILRGGQVYYLYNDVE-----N 449

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              V ++   L     + I I HG+M + D E VM+ F +    +L+ TT+IE GID+  
Sbjct: 450 IEKVTQKLAELVPE--ARITIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPS 507

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ IIIE A+H GLAQLHQLRGRVGR    +   LL   P  +S ++  RL  + + ED 
Sbjct: 508 ANTIIIERADHLGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDL 567

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 568 GAGFALATHDLEIRGAGELLGEDQSG 593


>gi|329767249|ref|ZP_08258776.1| transcription-repair coupling factor [Gemella haemolysans M341]
 gi|328836916|gb|EGF86563.1| transcription-repair coupling factor [Gemella haemolysans M341]
          Length = 1183

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 147/449 (32%), Positives = 250/449 (55%), Gaps = 23/449 (5%)

Query: 242  LMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            L++   K+E+  G   +++G +  +   +  ++PT  Q  A ++I +DM ++  M R+L 
Sbjct: 574  LIKLYIKRELSSGYAYSLDGSMQSEFEADFAYTPTDDQVKATEEIKRDMEKQRPMDRLLC 633

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VA+     AV    Q  ++ P  +LA+QHY+ F+ ++  N  + +E+++  
Sbjct: 634  GDVGFGKTEVAMRVAFKAVTDNKQVAVLVPTTLLAEQHYDNFVSRFA-NFPVNIEVVSRF 692

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                   +  +++  G+  II+GTH L  D  +Y  L L+I+DE+ RFGV+ + K+    
Sbjct: 693  KSAKDITEICKKLEEGKIDIIVGTHKLLNDKFKYKDLGLLIIDEEQRFGVKHKEKIKHLK 752

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                VL ++ATPIPRTL ++ +G  D+S I   P  R+PI+T +   N++  + E +   
Sbjct: 753  NTVDVLTLSATPIPRTLHMSLIGIRDLSVIETPPRERQPIQTFVTAQNKM-VIKEAVMNE 811

Query: 479  LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            ++ G + +++  ++E        ++ E++  L       +IA  HGRMS  + E++M   
Sbjct: 812  INRGGQVFYVYNRVE--------TIDEKYLELKRLLPDINIAYAHGRMSQRELENIMSDV 863

Query: 538  KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             +    +LI+TT+IE GID+ + + +I+E+A+ FGL+QL+QLRGRVGR    +   L+Y 
Sbjct: 864  IDRKYDMLISTTIIETGIDISNVNTLIVEDADRFGLSQLYQLRGRVGRSSREAYAYLMYE 923

Query: 598  P--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            P   L++NS  RLS +KN      GF IA +DL  R  G++LG +Q G    +     L+
Sbjct: 924  PFKSLTENSEKRLSAIKNFTSLGSGFKIAMQDLSIRGAGDVLGGRQHGFIDSV--GYTLY 981

Query: 653  DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
              +LE   ++ K IL  +P L   R Q +
Sbjct: 982  SQMLEQEIQEKKGIL--EPLLEQDRTQDV 1008


>gi|220907244|ref|YP_002482555.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425]
 gi|219863855|gb|ACL44194.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425]
          Length = 1169

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 138/411 (33%), Positives = 230/411 (55%), Gaps = 19/411 (4%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + LL +  Q  ++ G    ++    +++  + P+ PT  Q  AI+D+ +DM     M R+
Sbjct: 586 VDLLQLYAQRSQQQGFAFPLDQPWQEELEESFPYQPTPDQVKAIQDVKRDMESDRPMDRL 645

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA+ A+  A+ AG Q   +AP  IL QQHY  +K+      I + ++  
Sbjct: 646 VCGDVGFGKTEVAVRAIFKAITAGKQVAFLAPTTILTQQHYHTLKERFAPYPIQIGLLNR 705

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 R+  L+R+  G+  +++GTH L    + +  L L+++DE+ RFGV Q+ K+   
Sbjct: 706 FRSADERKNILQRLKTGELDVVVGTHQLLGKGVVFRDLGLLVIDEEQRFGVNQKEKIKTL 765

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            T   VL ++ATPIPRTL +   G  ++S IT  P  R+PIKT + P +  + +   L+ 
Sbjct: 766 KTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLAPYDP-ETIRSALRQ 824

Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            L  G + +++ P++E  E+  +  R +V          ++ IAI HG+M + + E+ M 
Sbjct: 825 ELDRGGQVFYVVPRVEGIEEVAAKLREMVP---------SARIAIAHGQMEEGELEATML 875

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +F NG  ++L+ TT+IE G+D+   + I+IE+A+ FGL+QL+QLRGRVGR   I +   L
Sbjct: 876 TFNNGEAEILVCTTIIESGLDIPRVNTILIEDAQKFGLSQLYQLRGRVGRA-GIQAHAWL 934

Query: 596 YHPP---LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           ++P    L++ +  RL  L+       G+ +A  D++ R  G +LG +Q G
Sbjct: 935 FYPKLNMLTEAARQRLRALQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQHG 985


>gi|311087188|gb|ADP67268.1| transcription-repair coupling factor [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 812

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 236/431 (54%), Gaps = 23/431 (5%)

Query: 219 EWTSPARE--RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
           +W     +  +  YD   A Q+  +  +++ K       N+E         +  F  T  
Sbjct: 214 DWNKEKHKISKTVYDH--AAQLLHIYAKRESKTGFAFKKNIEK--YDLFCNDCSFKTTSD 269

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   +K +L+DMS+   M R++ GDVG GKT +A+ A   AV    Q  I+ P  +LAQQ
Sbjct: 270 QNEVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQ 329

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY+  K    N  + + I++    Q  +    +   +G+ +IIIGTH L   +I++  L 
Sbjct: 330 HYKNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLG 389

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+I+DE+HRFGV  +  + +  +   +L +TATPIPRTL +   G  D+S I + PA R 
Sbjct: 390 LLIIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRL 449

Query: 457 PIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            IKT    I     ++ R  ++  +S G + Y+I  +++     N  ++ ER + L    
Sbjct: 450 AIKTF---IQEYSPILIRKTILREISRGGQVYYIYNKVQ-----NIMNIAERLSILIPE- 500

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            +SI I HG+M +ID + VM+ F N    +LI TT+IE G+D+  A+ IIIEN++HFGL+
Sbjct: 501 -ASIKIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLS 559

Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QLHQLRGR+GR    +  +LL +    ++ ++  RL  + + ++   GF ++ +DL+ R 
Sbjct: 560 QLHQLRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRG 619

Query: 630 EGEILGIKQSG 640
            GEILG +QSG
Sbjct: 620 VGEILGKEQSG 630


>gi|163751452|ref|ZP_02158676.1| transcription-repair coupling factor [Shewanella benthica KT99]
 gi|161328666|gb|EDP99815.1| transcription-repair coupling factor [Shewanella benthica KT99]
          Length = 1161

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 143/395 (36%), Positives = 216/395 (54%), Gaps = 15/395 (3%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   N++ +   +   + PF  T  QE+ I  +L DM     M R++ GDVG GKT VA+
Sbjct: 592 GTACNIDEQEYAQFANSFPFEETVDQETTINAVLTDMCSPISMDRLVCGDVGFGKTEVAM 651

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV  G Q  I+ P  +LAQQH+E  K    +  + +E+I+       ++  ++ +
Sbjct: 652 RAAFVAVNDGKQVAILVPTTLLAQQHFENFKDRFADWPVKIEVISRFKTAKEQKLIMDEL 711

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           + G+  IIIGTH L      +  L L+++DE+HRFGV+Q+ K+        +L +TATPI
Sbjct: 712 SKGKVDIIIGTHKLLHSEGDFDNLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPI 771

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL +   G  D+S I   PA R  +KT I   +    + E L   +  G + Y++  +
Sbjct: 772 PRTLNMAMSGMRDLSIIATPPAKRLAVKTFIREYDTT-TIREALLREILRGGQVYFLHNK 830

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +E        ++ +R N + E    + +   HG+M + D E VM  F +    +L+ TT+
Sbjct: 831 VE--------TIEKRANEIRELLPEARVVTAHGQMRERDLERVMSDFYHQKFNVLVCTTI 882

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRL 608
           IE GIDV  A+ I+IE A+ FGLAQLHQLRGRVGR    +   ++  HP  +S ++  RL
Sbjct: 883 IETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRSHHQAYAYMMTPHPKSISSDARKRL 942

Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             +   ED   GFL+A +DL+ R  GE+LG +QSG
Sbjct: 943 EAIGALEDLGAGFLLATQDLEIRGAGELLGDEQSG 977


>gi|116626979|ref|YP_819598.1| transcription-repair coupling factor [Streptococcus thermophilus
           LMD-9]
 gi|116100256|gb|ABJ65402.1| Transcription-repair coupling factor (superfamily II helicase)
           [Streptococcus thermophilus LMD-9]
 gi|312277424|gb|ADQ62081.1| Transcription-repair coupling factor (Superfamily II helicase)
           [Streptococcus thermophilus ND03]
          Length = 1168

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 144/379 (37%), Positives = 216/379 (56%), Gaps = 19/379 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV  G Q  I+ P 
Sbjct: 612 YVETVDQLRSIKEIKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPT 671

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QHY   K+  +N  + V+ ++    +  + + ++ +A G+  IIIGTH L    +
Sbjct: 672 TVLAHQHYMNFKERFENHAVEVDELSRFRSKKEQNETIKNLAKGRIDIIIGTHRLLSKDV 731

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S I  
Sbjct: 732 KFSDLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSIIET 791

Query: 451 KPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R P++T ++  N   I E I R    +  G + ++I  ++E        ++ ++ +
Sbjct: 792 APTNRYPVQTYVMETNPGLIREAILR---EMDRGGQIFYIYNRVE--------TIDQKVS 840

Query: 509 SLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            LHE    + I  +HG+MS++  E+ +  F NG   +L+ATT+IE GID+ + + ++IEN
Sbjct: 841 ELHELVPEARIGFVHGQMSEVMLENTLLDFLNGDYDILVATTIIETGIDIPNVNTLLIEN 900

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+H GL+ L+QLRGRVGR   I+   L+YHP   L++ S  RL  +K  TE   GF IA 
Sbjct: 901 ADHMGLSTLYQLRGRVGRSNRIAYAYLMYHPDKVLTEVSEKRLDAIKGFTELGSGFKIAM 960

Query: 623 EDLKQRKEGEILGIKQSGM 641
            DL  R  G ILG  QSG 
Sbjct: 961 RDLSIRGAGNILGASQSGF 979


>gi|310767325|gb|ADP12275.1| transcription-repair coupling factor [Erwinia sp. Ejp617]
          Length = 1148

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q    + PF  T  Q  AI  +L DM Q   M R++ 
Sbjct: 568 LLDIYAQRAAKTGFAFKHDKQQYQLFCDSFPFETTVDQAQAINAVLSDMCQPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+  +    N  + +E+++   
Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMMSRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + + L     G+  I+IGTH L Q+ I++  L L+IVDE+HRFGV+ + ++     
Sbjct: 688 TAKEQAQVLADAQEGKVDILIGTHKLLQNDIKWRDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   DE+  R + +L
Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDEMAVR-EAIL 803

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N     +R + L     + +A+ HG+M + + E VM+ 
Sbjct: 804 REVLRGGQVYYLYNDVE-----NIEKATKRLSELVPE--ARVALGHGQMRERELERVMND 856

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL 
Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAWLLT 916

Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            HP  ++ +++ RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 917 PHPKAMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEGQSG 965


>gi|330889122|gb|EGH21783.1| transcription-repair coupling factor [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 1150

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++ I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 599 GFPFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 659 VPTTPLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 719 DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 779 IATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 837

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ III
Sbjct: 838 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++
Sbjct: 889 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVL 948

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 949 ATNDLEIRGAGELLGDGQSG 968


>gi|299136367|ref|ZP_07029551.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX8]
 gi|298602491|gb|EFI58645.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX8]
          Length = 1301

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 162/460 (35%), Positives = 243/460 (52%), Gaps = 31/460 (6%)

Query: 192  DLLQKKSFPSIAEA--FNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            DL+QK        A   N + NP  AK       A + +A +        LL +  Q K 
Sbjct: 586  DLIQKYRSTETGPAPQLNRLGNPAWAKTKARVKKAMQDMAEE--------LLKLYAQRKA 637

Query: 250  EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
             +G   + +  +  +      F+ T  Q  AI DI  DM     M R+L GDVG GKT V
Sbjct: 638  AVGTAFSPDTNMQHEFEDAFDFNETDDQLRAIADIKADMESTQPMDRLLCGDVGYGKTEV 697

Query: 310  ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            A+ A   AV+ G Q  ++ P  +L  QH+E  K+      ++VE+I+       ++  LE
Sbjct: 698  AMRAAFKAVQDGKQVAVLTPTTVLCFQHFESFKRRFSKFPVVVEMISRFRTAKEKKDVLE 757

Query: 370  RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            R A G+  I+IGTHA+   S+Q+  L L++VDE+ RFGV+ + +L Q   A  VL M+AT
Sbjct: 758  RTAQGKVDILIGTHAILSQSLQFQDLGLLVVDEEQRFGVRHKERLKQMRAAIDVLSMSAT 817

Query: 430  PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYW 487
            PIPRTL ++ +G  D+S I   P  R  I+TV+    + DE + R  ++V L  G + Y+
Sbjct: 818  PIPRTLNMSLVGLRDMSVIETPPKDRMAIQTVVA---KFDEKLIRTAVEVELERGGQTYF 874

Query: 488  ICPQIEEKKE--SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            +  ++E   E  S  R +V +         + + + HG+M + + E VM +F +G   +L
Sbjct: 875  VHNRVETIYELASMIRELVPQ---------ARVVVGHGQMPEAELERVMLAFMDGEYDVL 925

Query: 546  IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKN 603
             AT++IE G+D+  A+ III  A+  GL++L+QLRGRVGR    +   LL  P   L++ 
Sbjct: 926  CATSIIENGLDISKANTIIINRADRHGLSELYQLRGRVGRSNRRAYAYLLIPPEQQLTEI 985

Query: 604  SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            +  RL+ LK   D   GF IA  DL+ R  G +LG +QSG
Sbjct: 986  ARRRLAALKEFSDLGAGFKIAALDLELRGAGNMLGGEQSG 1025


>gi|310829353|ref|YP_003961710.1| transcription-repair coupling factor [Eubacterium limosum KIST612]
 gi|308741087|gb|ADO38747.1| transcription-repair coupling factor [Eubacterium limosum KIST612]
          Length = 1140

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 166/476 (34%), Positives = 254/476 (53%), Gaps = 33/476 (6%)

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
           N + NP   K       A E +A DEL    IAL   R+  K   G   + +    ++  
Sbjct: 540 NQMGNPDWQKAKNKAQKAVEDMA-DEL----IALYAKRRSMK---GYAFSPDTSWQKEFE 591

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            + P+  T+ Q   +++I  DM  +  M R+L GDVG GKT VAL A   AV  G Q  +
Sbjct: 592 DDFPYIETEDQLRCVEEIKADMESEIPMDRLLCGDVGYGKTEVALRAAFKAVMEGKQVAM 651

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  ILAQQHY  + +  +   I VE+I+       ++K L  +A G+  +IIGTH L 
Sbjct: 652 LVPTTILAQQHYNTVLERFRKYPISVEVISRFRTSGQQKKILGDLALGKLDMIIGTHRLL 711

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              +Q+  L L+I+DE+ RFGV+ + K+ Q      VL ++ATPIPRTL ++  G  D+S
Sbjct: 712 SQDVQFKDLGLLIIDEEQRFGVRSKEKIKQLKQNVDVLTLSATPIPRTLHMSMTGVRDMS 771

Query: 447 KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKES--NFRS 502
            I E P GR+P++T ++  N   I + I R    L  G + Y++  ++ +  E   + +S
Sbjct: 772 VIEEPPEGRRPVQTYVMAYNPLIIQDAINR---ELGRGGQVYYVHNRVHDIHEVAIDVQS 828

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + I + HGRMS  + E +M  F N    +L+ TT++E G+DV +A+ 
Sbjct: 829 LVP---------DARIVVAHGRMSGSELEDIMVDFLNHDFDILVTTTIVESGLDVKNANT 879

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTRLSVLKNTE---DGF 618
           +II+  +HFGL+QL+QLRGRVGR +  +   + +    L++ +  RL  +K+      GF
Sbjct: 880 MIIDEGDHFGLSQLYQLRGRVGRSDAQAYAYVTHKKEILTEVAQKRLKAIKDFTAFGSGF 939

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA---RKDAKHILTQDP 671
            +A  DL+ R  G ILG +QSG   F I   EL+  +LE A   R D   + T++P
Sbjct: 940 KVAMRDLEIRGAGNILGAEQSGHL-FKIGY-ELYCRILEEAISKRMDGVEVETEEP 993


>gi|219682214|ref|YP_002468598.1| transcription-repair coupling factor [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621947|gb|ACL30103.1| transcription-repair coupling factor [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 812

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 236/431 (54%), Gaps = 23/431 (5%)

Query: 219 EWTSPARE--RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
           +W     +  +  YD   A Q+  +  +++ K       N+E         +  F  T  
Sbjct: 214 DWNKEKHKISKTVYDH--AAQLLHIYAKRESKTGFAFKKNIEK--YDLFCNDCSFKTTSD 269

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   +K +L+DMS+   M R++ GDVG GKT +A+ A   AV    Q  I+ P  +LAQQ
Sbjct: 270 QNEVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQ 329

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY+  K    N  + + I++    Q  +    +   +G+ +IIIGTH L   +I++  L 
Sbjct: 330 HYKNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLG 389

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+I+DE+HRFGV  +  + +  +   +L +TATPIPRTL +   G  D+S I + PA R 
Sbjct: 390 LLIIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRL 449

Query: 457 PIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            IKT    I     ++ R  ++  +S G + Y+I  +++     N  ++ ER + L    
Sbjct: 450 AIKTF---IQEYSPILIRKTILREISRGGQVYYIYNKVQ-----NIMNIAERLSILIPE- 500

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            +SI I HG+M +ID + VM+ F N    +LI TT+IE G+D+  A+ IIIEN++HFGL+
Sbjct: 501 -ASIKIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLS 559

Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QLHQLRGR+GR    +  +LL +    ++ ++  RL  + + ++   GF ++ +DL+ R 
Sbjct: 560 QLHQLRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRG 619

Query: 630 EGEILGIKQSG 640
            GEILG +QSG
Sbjct: 620 VGEILGKEQSG 630


>gi|15616905|ref|NP_240118.1| transcription-repair coupling factor [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|14194918|sp|P57381|MFD_BUCAI RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|25403587|pir||D84964 transcription-repair coupling factor [imported] - Buchnera sp.
           (strain APS)
 gi|10038969|dbj|BAB13004.1| transcription-repair coupling factor [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 812

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 236/431 (54%), Gaps = 23/431 (5%)

Query: 219 EWTSPARE--RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
           +W     +  +  YD   A Q+  +  +++ K       N+E         +  F  T  
Sbjct: 214 DWNKEKHKISKTVYDH--AAQLLHIYAKRESKTGFAFKKNIEK--YDLFCNDCSFKTTSD 269

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   +K +L+DMS+   M R++ GDVG GKT +A+ A   AV    Q  I+ P  +LAQQ
Sbjct: 270 QNEVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQ 329

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY+  K    N  + + I++    Q  +    +   +G+ +IIIGTH L   +I++  L 
Sbjct: 330 HYKNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLG 389

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+I+DE+HRFGV  +  + +  +   +L +TATPIPRTL +   G  D+S I + PA R 
Sbjct: 390 LLIIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRL 449

Query: 457 PIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            IKT    I     ++ R  ++  +S G + Y+I  +++     N  ++ ER + L    
Sbjct: 450 AIKTF---IQEYSPILIRKTILREISRGGQVYYIYNKVQ-----NIMNIAERLSILIPE- 500

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            +SI I HG+M +ID + VM+ F N    +LI TT+IE G+D+  A+ IIIEN++HFGL+
Sbjct: 501 -ASIKIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLS 559

Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QLHQLRGR+GR    +  +LL +    ++ ++  RL  + + ++   GF ++ +DL+ R 
Sbjct: 560 QLHQLRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRG 619

Query: 630 EGEILGIKQSG 640
            GEILG +QSG
Sbjct: 620 VGEILGKEQSG 630


>gi|238894149|ref|YP_002918883.1| transcription-repair coupling factor [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546465|dbj|BAH62816.1| transcription-repair ATP-dependent coupling factor [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 1148

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 150/409 (36%), Positives = 221/409 (54%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q      PF  T  Q  AI  +L DM Q   M R++ 
Sbjct: 568 LLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+  +    N  + +E+++   
Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + + L++ A G+  I+IGTH L Q  ++   L L+IVDE+HRFGV+ + ++     
Sbjct: 688 SAKEQAQILKQAAEGKIDILIGTHKLLQSEVKLRDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDALVVR-EAIL 803

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N +   ++   L     + IAI HG+M + + E VM+ 
Sbjct: 804 RETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIAIGHGQMRERELERVMND 856

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916

Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            HP  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 917 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965


>gi|312865767|ref|ZP_07725989.1| transcription-repair coupling factor [Streptococcus downei F0415]
 gi|311098642|gb|EFQ56864.1| transcription-repair coupling factor [Streptococcus downei F0415]
          Length = 1169

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 155/444 (34%), Positives = 235/444 (52%), Gaps = 29/444 (6%)

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
           N +++ R  K  +  S   E +A D+LL     L   R Q K   G   + +    ++  
Sbjct: 557 NKLNDGRFQKAKQKVSKQVEDIA-DDLLK----LYAERSQLK---GFAFSADDDDQREFE 608

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            +  +  T  Q  +IK++  DM     M R+L GDVG GKT VA+     AV    Q  +
Sbjct: 609 EDFAYVETDDQLRSIKEVKADMESDKPMDRLLVGDVGFGKTEVAMRGAFKAVNDNKQVAV 668

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  +LAQQHY   K+  +N  + V I++    +  +   L  ++ GQ  IIIGTH L 
Sbjct: 669 LVPTTVLAQQHYNNFKERFENYAVQVGILSRFQTKKEQTDTLAALSKGQIDIIIGTHRLL 728

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              +++  L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S
Sbjct: 729 SKDVEFLDLGLIVIDEEQRFGVKHKEKLKELKKKSDVLTLTATPIPRTLHMSMLGIRDLS 788

Query: 447 KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRS 502
            I   P  R P++T ++  N   I E I R    +  G +A+++  ++E  ++K    + 
Sbjct: 789 VIETPPTNRYPVQTYVLETNPGMIREAIIR---EIDRGGQAFYVYNRVETIDRKAMELQE 845

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V   N         I ++HG+MS+I  E+ +  F +G   +L+ATT+IE GID+ + + 
Sbjct: 846 LVPEAN---------IGVVHGQMSEIQLENTLFDFLDGVYDVLVATTIIETGIDMPNVNT 896

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DG 617
           + +ENA+  GL+ L+QLRGRVGR   I+   L+Y P   LS+ S  RL  +K  TE   G
Sbjct: 897 LFVENADQMGLSTLYQLRGRVGRSNRIAYAYLMYQPDKVLSEASEKRLDAIKGFTELGSG 956

Query: 618 FLIAEEDLKQRKEGEILGIKQSGM 641
           F IA  DL  R  G ILG  QSG 
Sbjct: 957 FKIAMRDLSIRGAGNILGASQSGF 980


>gi|256003231|ref|ZP_05428223.1| transcription-repair coupling factor [Clostridium thermocellum DSM
           2360]
 gi|255992922|gb|EEU03012.1| transcription-repair coupling factor [Clostridium thermocellum DSM
           2360]
 gi|316939280|gb|ADU73314.1| transcription-repair coupling factor [Clostridium thermocellum DSM
           1313]
          Length = 1178

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 221/378 (58%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q   I++I +DM     M R+L GDVG GKT VA+ A+  AV  G Q   + P
Sbjct: 629 PYQETEDQLRCIEEIKRDMESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMDGKQVAYLVP 688

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHY   K+  ++  I VE+++    QA +++ L+ +  G   ++IGTH L Q  
Sbjct: 689 TTVLAQQHYNTFKERMKDFPITVEVLSRFRTQAEQKRILKDVKAGMVDVLIGTHRLLQKD 748

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+++DE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  DIS I 
Sbjct: 749 VCFKDLGLLVIDEEQRFGVTHKEKIKQMKTNIDVLTLTATPIPRTLHMSLVGIRDISTIE 808

Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           E P  R P++T ++  N  DEV+ + +   +S G + +++  ++        R++ ++  
Sbjct: 809 EPPEERYPVQTYVMEYN--DEVVRDAINREMSRGGQVFYLYNRV--------RAINQKAA 858

Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            + +    + +AI HG+M++ + E++M  F NG   +L+ TT+IE G+D+ + + II+E+
Sbjct: 859 EIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVED 918

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GLAQL+QLRGRVGR   ++   + Y     LS+ +  RL  +K  TE   GF IA 
Sbjct: 919 ADKMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAM 978

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +Q G
Sbjct: 979 RDLQLRGAGNLLGPQQHG 996


>gi|219681659|ref|YP_002468045.1| transcription-repair coupling factor [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471348|ref|ZP_05635347.1| transcription-repair coupling factor [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624502|gb|ACL30657.1| transcription-repair coupling factor [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 812

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 236/431 (54%), Gaps = 23/431 (5%)

Query: 219 EWTSPARE--RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
           +W     +  +  YD   A Q+  +  +++ K       N+E         +  F  T  
Sbjct: 214 DWNKEKHKISKTVYDH--AAQLLHIYAKRESKTGFSFKKNIEK--YDLFCNDCSFKTTSD 269

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   +K +L+DMS+   M R++ GDVG GKT +A+ A   AV    Q  I+ P  +LAQQ
Sbjct: 270 QNEVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQ 329

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY+  K    N  + + I++    Q  +    +   +G+ +IIIGTH L   +I++  L 
Sbjct: 330 HYKNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLG 389

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+I+DE+HRFGV  +  + +  +   +L +TATPIPRTL +   G  D+S I + PA R 
Sbjct: 390 LLIIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRL 449

Query: 457 PIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            IKT    I     ++ R  ++  +S G + Y+I  +++     N  ++ ER + L    
Sbjct: 450 AIKTF---IQEYSPILIRKTILREISRGGQVYYIYNKVQ-----NIMNIAERLSILIPE- 500

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            +SI I HG+M +ID + VM+ F N    +LI TT+IE G+D+  A+ IIIEN++HFGL+
Sbjct: 501 -ASIKIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLS 559

Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QLHQLRGR+GR    +  +LL +    ++ ++  RL  + + ++   GF ++ +DL+ R 
Sbjct: 560 QLHQLRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRG 619

Query: 630 EGEILGIKQSG 640
            GEILG +QSG
Sbjct: 620 VGEILGKEQSG 630


>gi|160878272|ref|YP_001557240.1| transcription-repair coupling factor [Clostridium phytofermentans
           ISDg]
 gi|160426938|gb|ABX40501.1| transcription-repair coupling factor [Clostridium phytofermentans
           ISDg]
          Length = 1179

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 143/377 (37%), Positives = 211/377 (55%), Gaps = 15/377 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI D  +DM  K  M R++ GDVG GKT +A+ A   A+  G Q V + P
Sbjct: 624 PYEETDDQLRAIDDTKRDMESKKIMDRLICGDVGYGKTEIAIRAAFKAISDGKQVVFLVP 683

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHY    +   N  I V+++      A ++K LE +  GQ  I+IGTH +    
Sbjct: 684 TTILAQQHYNTFSQRMMNFPISVDMLCRFKTPAQQKKTLENLKKGQLDILIGTHRVLSKD 743

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           IQ+  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S + 
Sbjct: 744 IQFKNLGLLIIDEEQRFGVTHKEKIKQMKGDIDVLTLTATPIPRTLHMSLVGIRDMSVLE 803

Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           E P  R PI+T ++  N  DE+I E +   L+ G + Y++  ++    E    + + R  
Sbjct: 804 EPPVDRLPIQTFVLEHN--DEIIREAINRELARGGQVYYVHNRVNGLDE--ITNTIARLV 859

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                  +++A  HG+M +   E +M  F NG   +L++TT+IE G+D+ + + +II+NA
Sbjct: 860 P-----DANVAFAHGQMHEHQLEKIMFEFINGEIDVLVSTTIIETGLDISNVNTMIIDNA 914

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623
           +  GL+QL+QLRGRVGR    S   L+Y     L + +  RL  +K  TE   GF IA  
Sbjct: 915 DQLGLSQLYQLRGRVGRSNRTSFAFLMYKRDKLLKEVAEKRLQAIKEFTELGSGFKIAMR 974

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G +LG +QSG
Sbjct: 975 DLEIRGAGNLLGAQQSG 991


>gi|282858160|ref|ZP_06267355.1| transcription-repair-coupling factor [Pyramidobacter piscolens
           W5455]
 gi|282584082|gb|EFB89455.1| transcription-repair-coupling factor [Pyramidobacter piscolens
           W5455]
          Length = 990

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 142/409 (34%), Positives = 224/409 (54%), Gaps = 16/409 (3%)

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
            LL +  Q +   G     +G + ++   + P+  T  Q  AI+D+  DM ++  M R++
Sbjct: 434 GLLNLYAQRELADGRAFGRDGDLLKRFEESFPYKETVDQLRAIRDVKHDMERRWPMDRLI 493

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GDVG GKT V L A    VE G QA I+AP  +LA QHY           I VE+++  
Sbjct: 494 VGDVGYGKTEVVLRAAVKTVENGAQAAIIAPTTVLALQHYRTCVARVGELPIRVELLSRM 553

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +P+  +++ L+  A+G+  I+IGTH LFQD I++  L L+I+DE+HRFGV+ + +L    
Sbjct: 554 IPKKKQKEILDETANGRVDILIGTHRLFQDDIRFKDLGLLIIDEEHRFGVKHKERLKVAH 613

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               VL ++ATPIPR+L +   G  DIS I   P GR  + TV    +R D  +    V+
Sbjct: 614 PGLDVLSLSATPIPRSLSMAMRGIRDISVIATSPRGRGEVFTV---TSRWDPSLAHDAVL 670

Query: 479 --LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             L  G + Y++  +I++ ++   R +  RF     H T   A+ HG+M + + E  M+ 
Sbjct: 671 RELMRGGQVYYLHNRIDDIEQIAAR-LANRFPG---HRT---AVAHGQMGERELEKTMNE 723

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G  ++L+ TT+IE G+DV  A+ +I+++    GLAQ+HQ+RGR+GR  E +  +  Y
Sbjct: 724 FYDGKIEILVCTTIIESGLDVPRANTLIVDDVRRLGLAQMHQIRGRIGRRSENAYALFFY 783

Query: 597 HPPLS----KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
               S    +     L  + +   G+ +A+ DL+ R  GEILG +Q G 
Sbjct: 784 ESEESGGQTRERLEALGAVGSQNGGYQLAQRDLEIRGAGEILGTEQHGF 832


>gi|326405611|gb|ADZ62682.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis CV56]
          Length = 1161

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 147/445 (33%), Positives = 241/445 (54%), Gaps = 31/445 (6%)

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
           N +++ R  K   + S   E ++ D+L+      L   +Q KK  G   + +    ++  
Sbjct: 551 NKLNDGRWRKTMSYVSKQVEDIS-DDLIK-----LYAERQAKK--GFAFSPDDTSQEEFD 602

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
               +  T+ Q  +I +I  DM  +  M R+L GDVG GKT VA+ A   A+  G Q  +
Sbjct: 603 SGFSYVETEDQMRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQVAV 662

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  +LA+QH+    +   N  + VE+++    +  + + L ++  G+  +IIGTH L 
Sbjct: 663 LVPTTVLAEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGRVDLIIGTHRLL 722

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              ++++ L L+I+DE+ RFGV+ + +L +  T   VL +TATPIPRTL ++ LG  D+S
Sbjct: 723 SKDVEFFDLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLS 782

Query: 447 KITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFR 501
            I   P  R P++T ++  N     D V+      +S G + Y++  +++  E+K S   
Sbjct: 783 VIETPPTNRYPVQTYVMETNYGVVRDAVLRE----ISRGGQVYYVYNRVDTIEQKVSQLE 838

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++           + I  IHG+M+++  E+ + +F  G   +L+ATT+IE G+D+ +A+
Sbjct: 839 ELIPE---------ARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNAN 889

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--D 616
            + IENA+  GL+QL+QLRGRVGR   ++   L+Y P   LS+ S  RL  +K  TE   
Sbjct: 890 TLFIENADMMGLSQLYQLRGRVGRSNRVAYAYLMYRPEKILSEVSEKRLEAIKGFTELGS 949

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGM 641
           GF IA  DL  R  G +LG +QSG 
Sbjct: 950 GFKIAMRDLSIRGAGNLLGSEQSGF 974


>gi|281418467|ref|ZP_06249486.1| transcription-repair coupling factor [Clostridium thermocellum
           JW20]
 gi|281407551|gb|EFB37810.1| transcription-repair coupling factor [Clostridium thermocellum
           JW20]
          Length = 1178

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 221/378 (58%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q   I++I +DM     M R+L GDVG GKT VA+ A+  AV  G Q   + P
Sbjct: 629 PYQETEDQLRCIEEIKRDMESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMDGKQVAYLVP 688

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHY   K+  ++  I VE+++    QA +++ L+ +  G   ++IGTH L Q  
Sbjct: 689 TTVLAQQHYNTFKERMKDFPITVEVLSRFRTQAEQKRILKDVKAGMVDVLIGTHRLLQKD 748

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+++DE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  DIS I 
Sbjct: 749 VCFKDLGLLVIDEEQRFGVTHKEKIKQMKTNIDVLTLTATPIPRTLHMSLVGIRDISTIE 808

Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           E P  R P++T ++  N  DEV+ + +   +S G + +++  ++        R++ ++  
Sbjct: 809 EPPEERYPVQTYVMEYN--DEVVRDAINREMSRGGQVFYLYNRV--------RAINQKAA 858

Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            + +    + +AI HG+M++ + E++M  F NG   +L+ TT+IE G+D+ + + II+E+
Sbjct: 859 EIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVED 918

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GLAQL+QLRGRVGR   ++   + Y     LS+ +  RL  +K  TE   GF IA 
Sbjct: 919 ADKMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAM 978

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +Q G
Sbjct: 979 RDLQLRGAGNLLGPQQHG 996


>gi|225849434|ref|YP_002729599.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase
           mfd) [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643749|gb|ACN98799.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase
           mfd) [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 938

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 139/396 (35%), Positives = 227/396 (57%), Gaps = 17/396 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P++VEG++  K  R+ P+  T  Q  AIK++ +D+S+   M R++ GDVG GKT VA+ +
Sbjct: 391 PLDVEGQLITKFERDFPYVETPDQLKAIKEVKKDLSKDRPMERLICGDVGFGKTEVAIRS 450

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                  G Q +++ P  +LA QHY   K+  +   +IVE ++    ++ + + ++++  
Sbjct: 451 AFIHAVNGYQTLVLVPTTVLAYQHYVKFKERLEKYGLIVENLSRLKTKSQQEEIIKKLEE 510

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G+  +++ TH    D++++  L L+I+DE+HRFGV+ + K+ Q   +   L +TATPIPR
Sbjct: 511 GKIDVVVATHKALSDNVKFKNLGLLIIDEEHRFGVRAKEKIRQLKKSIDTLYLTATPIPR 570

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA--YWICPQ 491
           TL +   G  DIS I   P GR  +KT + P    DE I +  V     +K   +++  +
Sbjct: 571 TLNMALSGLKDISVINTPPEGRYEVKTYVSP---FDENILKKAVEFELNRKGQVFYVHNR 627

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +E        ++ ER N L   F ++ +  IHG+M   + E  +  F  G   +L++T++
Sbjct: 628 VE--------TIEERVNYLKTLFKNAKVDFIHGQMKPSEIEKKILYFIEGKIDILVSTSI 679

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL-S 609
           IE GID+  A+ +I+E A+ FGLAQL+ LRGRVGRG   + C L     ++K++  RL +
Sbjct: 680 IETGIDIPTANTLIVERADLFGLAQLYHLRGRVGRGNIQAYCYLFIPKEITKDARRRLDA 739

Query: 610 VLKNTE--DGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           +LK T    G  ++ EDL+ R  G ILGI+QSG  K
Sbjct: 740 ILKLTRPGSGLKVSIEDLQIRGPGNILGIEQSGFIK 775


>gi|91225270|ref|ZP_01260438.1| transcription-repair coupling factor [Vibrio alginolyticus 12G01]
 gi|91189909|gb|EAS76181.1| transcription-repair coupling factor [Vibrio alginolyticus 12G01]
          Length = 1153

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 214/382 (56%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A +   Q  ++
Sbjct: 599 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFIATDNSKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  L+ +A G+  I++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  IKT    + + +E + R  V+  +  G + Y++  Q+E  EK   + + +
Sbjct: 779 IATPPARRLAIKTF---VRQKEEPVVREAVLREIMRGGQVYFLHNQVETIEKTAEDLQKL 835

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +           + I + HG+M + + E +M+ F +    +L+ TT+IE GIDV  A+ I
Sbjct: 836 IPE---------ARITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTI 886

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618
           I++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF
Sbjct: 887 IMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGF 946

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 947 TLATHDLEIRGAGELLGDEQSG 968


>gi|312959638|ref|ZP_07774155.1| transcription-repair coupling factor [Pseudomonas fluorescens WH6]
 gi|311286355|gb|EFQ64919.1| transcription-repair coupling factor [Pseudomonas fluorescens WH6]
          Length = 1149

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 145/377 (38%), Positives = 210/377 (55%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++ I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P 
Sbjct: 601 FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT 660

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L  D +
Sbjct: 661 TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLSDDV 720

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I  
Sbjct: 721 KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT 780

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
            PA R  ++T ++  N+   V E L   L  G + Y++   ++  EK  ++   +V    
Sbjct: 781 PPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPE-- 837

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                  + IAI HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A
Sbjct: 838 -------ARIAIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERA 890

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  
Sbjct: 891 DKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATN 950

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  GE+LG  QSG
Sbjct: 951 DLEIRGAGELLGDGQSG 967


>gi|294788315|ref|ZP_06753558.1| transcription-repair coupling factor [Simonsiella muelleri ATCC
           29453]
 gi|294483746|gb|EFG31430.1| transcription-repair coupling factor [Simonsiella muelleri ATCC
           29453]
          Length = 1131

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 247/453 (54%), Gaps = 21/453 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G    +     Q       +  T+ Q +AI  +L+D++Q   M R++ 
Sbjct: 557 LLNLYAQRAAQTGFKFEINELDYQAFADGFGYEETEDQAAAIVSVLKDLTQAKPMDRLVC 616

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
           GDVG GKT VAL A   AV AG Q  ++AP  +L +QH + F  ++      I ++   N
Sbjct: 617 GDVGFGKTEVALRAAFVAVMAGKQVAVLAPTTLLVEQHAKNFADRFADFPVQIAQLSRFN 676

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
             +   + AL  +A G   I+IGTH L QD+IQ+  L LVI+DE+HRFGV+Q+ +L +  
Sbjct: 677 STK-DTKSALAGMADGTVDIVIGTHKLVQDNIQFKNLGLVIIDEEHRFGVRQKEQLKRLR 735

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLK 476
               +L +TATPIPRTL +   G  D S IT  P+ R  +KT + P +   I E + R  
Sbjct: 736 ANVDLLTLTATPIPRTLSMALDGLRDFSLITTAPSRRLAVKTFVKPFSEASIQEAVLR-- 793

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             L  G + +++  +++  +  N R  +E  N L +   + I + HG++ + + E VM  
Sbjct: 794 -ELKRGGQVFFLHNEVDTIE--NMRDKLE--NLLPQ---ARIGVAHGQLRERELEQVMRD 845

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F N    +L+ +T+IE GID+ +A+ III  A+ FG+AQLHQLRGRVGR    +   LL 
Sbjct: 846 FLNQKFNVLLCSTIIETGIDIPNANTIIINRADKFGIAQLHQLRGRVGRSHHQAYAYLLT 905

Query: 597 HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
              L+K++  RL  + + ++   GF +A +DL+ R  GEILG  QSG  + +     L+ 
Sbjct: 906 PEYLTKDAQKRLDAILSADELGAGFSLAMQDLEIRGAGEILGEGQSG--EMMQVGLTLYT 963

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            +L+ A +D K   T  PDL S  G +  I L+
Sbjct: 964 EMLKQAVRDLKKGKT--PDLDSPLGVNTDIKLH 994


>gi|259908777|ref|YP_002649133.1| transcription-repair coupling factor [Erwinia pyrifoliae Ep1/96]
 gi|224964399|emb|CAX55908.1| Transcription-repair-coupling factor [Erwinia pyrifoliae Ep1/96]
 gi|283478753|emb|CAY74669.1| Transcription-repair-coupling factor [Erwinia pyrifoliae DSM 12163]
          Length = 1148

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 220/409 (53%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q    + PF  T  Q  AI  +L DM Q   M R++ 
Sbjct: 568 LLDIYAQRAAKTGFAFKHDKQQYQLFCDSFPFETTVDQAQAINAVLSDMCQPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+  +    N  + +E+++   
Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMMSRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + + L     G+  I+IGTH L Q+ I++  L L+IVDE+HRFGV+ + ++     
Sbjct: 688 TAKEQAQVLADAQEGKVDILIGTHKLLQNDIKWRDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   DE+  R + +L
Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDEMAVR-EAIL 803

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N     +R   L     + +A+ HG+M + + E VM+ 
Sbjct: 804 REVLRGGQVYYLYNDVE-----NIEKATKRLTELVPE--ARVALGHGQMRERELERVMND 856

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL 
Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAWLLT 916

Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            HP  ++ +++ RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 917 PHPKAMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEGQSG 965


>gi|213157165|ref|YP_002319210.1| transcription-repair coupling factor [Acinetobacter baumannii
           AB0057]
 gi|213056325|gb|ACJ41227.1| transcription-repair coupling factor [Acinetobacter baumannii
           AB0057]
          Length = 1153

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 146/428 (34%), Positives = 230/428 (53%), Gaps = 19/428 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517
           T  +  N    + E +   L  G + Y++  ++E  E+   N R +V           + 
Sbjct: 793 T-FVQENTDASIKEAILRELLRGGQVYFLHNEVETIERAAENIRVLVPE---------AR 842

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLH
Sbjct: 843 VAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLH 902

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE
Sbjct: 903 QLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGE 962

Query: 633 ILGIKQSG 640
           +LG +QSG
Sbjct: 963 LLGEQQSG 970


>gi|146296229|ref|YP_001180000.1| transcription-repair coupling factor [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409805|gb|ABP66809.1| transcription-repair coupling factor [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 1143

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 152/430 (35%), Positives = 239/430 (55%), Gaps = 18/430 (4%)

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EW    ++     E++A  I  L  ++Q KK  G   + +    ++     P++ T+ Q
Sbjct: 553 LEWQKQKQKVRKSLEVVAKDIVELYAKRQLKK--GFKFSPDTIWQKEFEEKFPYTETEGQ 610

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI++I +DM  +  M RIL GDVG GKT VA+ A   AV    Q  ++ P  ILAQQH
Sbjct: 611 LQAIEEIKKDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQH 670

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y    +  ++  I +E+++    ++ ++K L+ +  G   IIIGTH L  + +++  L L
Sbjct: 671 YMTFVQRMKDFPITIEVLSRLKSESQQKKILKALKDGTIDIIIGTHRLLSNDVKFKDLGL 730

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+H+FGV+ + K+ +      VL +TATPIPRTL +  LG  D+S I + P  R P
Sbjct: 731 LIIDEEHKFGVEHKEKIKKLKENVDVLTLTATPIPRTLNMALLGIRDLSIIEDPPEDRFP 790

Query: 458 IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           ++T ++  N   I E I  LK V S G + +++  ++++ +E     VV R  +L     
Sbjct: 791 VQTFVMEYNEKVIKEAI--LKEV-SRGGQVFYLYNRVKDIEE-----VVNRLQALLGE-D 841

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             IA  HG+M +   E V+  F NG   +L+ TT+IE G+D+ + + +I+E+A+  GLAQ
Sbjct: 842 IKIAYAHGQMDERQLEEVLIDFINGKYDVLVCTTIIESGVDMPNVNTLIVEDADRLGLAQ 901

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR  +++     +     LS+ +  RLS +K  TE   GF IA  DL+ R  
Sbjct: 902 LYQLRGRVGRSNKLAYAYFTFRKDKVLSEEAAKRLSAIKEFTELGSGFKIAMRDLEIRGA 961

Query: 631 GEILGIKQSG 640
           G I+G  Q G
Sbjct: 962 GSIVGKLQHG 971


>gi|169796102|ref|YP_001713895.1| transcription-repair coupling protein [Acinetobacter baumannii AYE]
 gi|215483557|ref|YP_002325776.1| transcription-repair coupling factor [Acinetobacter baumannii
           AB307-0294]
 gi|301345057|ref|ZP_07225798.1| transcription-repair coupling factor [Acinetobacter baumannii
           AB056]
 gi|301510356|ref|ZP_07235593.1| transcription-repair coupling factor [Acinetobacter baumannii
           AB058]
 gi|301595346|ref|ZP_07240354.1| transcription-repair coupling factor [Acinetobacter baumannii
           AB059]
 gi|169149029|emb|CAM86906.1| transcription-repair coupling protein [Acinetobacter baumannii AYE]
 gi|213987269|gb|ACJ57568.1| transcription-repair coupling factor [Acinetobacter baumannii
           AB307-0294]
          Length = 1153

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 146/428 (34%), Positives = 230/428 (53%), Gaps = 19/428 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517
           T  +  N    + E +   L  G + Y++  ++E  E+   N R +V           + 
Sbjct: 793 T-FVQENTDASIKEAILRELLRGGQVYFLHNEVETIERAAENIRVLVPE---------AR 842

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLH
Sbjct: 843 VAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLH 902

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE
Sbjct: 903 QLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGE 962

Query: 633 ILGIKQSG 640
           +LG +QSG
Sbjct: 963 LLGEQQSG 970


>gi|294101748|ref|YP_003553606.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
           DSM 12261]
 gi|293616728|gb|ADE56882.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
           DSM 12261]
          Length = 1025

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 151/449 (33%), Positives = 237/449 (52%), Gaps = 22/449 (4%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258
            P  A A  ++ + R  +  +     RER+  +      +  L  R++  K    P+  E
Sbjct: 425 LPEEATAETVLDSLRGTRWKKAVEKTRERVREE---VKNLVRLYARRELLKGYAFPVASE 481

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             I +  +   P+  T  Q  A ++ILQDM   + M R+L GDVG GKT +A+ A   A 
Sbjct: 482 --IYRHFVEAFPYVETPDQLRAEQEILQDMESSHPMDRLLVGDVGFGKTEIAMRAAFKAS 539

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           EAG Q V++ P  ILAQQHY   +       I VE+++  +  + +++ LE    G   I
Sbjct: 540 EAGKQVVVLVPTTILAQQHYHTFRSRMAGFPIRVEVLSRFVSTSRQKRILEDTKKGLVDI 599

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           +IGT  L Q  I++  L L+I+DE+HRFGV  + KL        VL ++ATPIPRTL L+
Sbjct: 600 LIGTQRLLQKDIEFKDLGLLIIDEEHRFGVMHKEKLKDTREGLDVLTLSATPIPRTLSLS 659

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIEEKKE 497
             G    S I+  P  R P+ T++ P  R   +I R  +  L+ G + +++  +I   K 
Sbjct: 660 LRGLRSFSIISTPPYNRVPVLTMVGP--RKKNLIHRAVLQELNRGGQVFFVSNRINRLK- 716

Query: 498 SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                   ++  L   F  + I++ HG+M++ D E  M  F NG   +L+ TT++E G+D
Sbjct: 717 -------GKYEELKIMFPEARISMAHGQMAEKDLERTMLDFYNGNLDILVCTTIVESGLD 769

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTR---LSVL 611
           +  A+ +I+++A+  GLAQ++QLRGRVGR EE +    LY    PL K +  R   +S  
Sbjct: 770 IPRANTLIVDDAQELGLAQMYQLRGRVGRREEGAYAYFLYPETMPLQKETMERFEAISAF 829

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
            +   G+ +A +DL+ R  G+I+G+ Q G
Sbjct: 830 SDIGSGYSLALQDLQIRGSGDIIGVSQHG 858


>gi|163791051|ref|ZP_02185472.1| transcription-repair coupling factor [Carnobacterium sp. AT7]
 gi|159873696|gb|EDP67779.1| transcription-repair coupling factor [Carnobacterium sp. AT7]
          Length = 1173

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 140/402 (34%), Positives = 223/402 (55%), Gaps = 21/402 (5%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++E+G   + +    ++     P++ T  Q  +  +I  DM QK  M R+L GDVG GKT
Sbjct: 597 EQEVGYAFSPDDAYQEEFENAFPYTETDDQLRSTAEIKHDMEQKKPMDRLLVGDVGYGKT 656

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A+  AV+ G QA  + P  ILAQQHYE + +   +  I + +++    +  + + 
Sbjct: 657 EVAMRAVFKAVQEGKQAAFLVPTTILAQQHYETMLQRFADFPIEIGLLSRFRTKKQQNET 716

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           +  +  GQ  I+IGTH +    I++  L L+IVDE+ RFGV+ + KL Q      VL +T
Sbjct: 717 IAGLKKGQVDIVIGTHRILSKDIEFQDLGLLIVDEEQRFGVKHKEKLKQLKAQVDVLTLT 776

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKA 485
           ATPIPRTL ++ LG  D+S I   PA R P++T ++  N   + E +ER    ++ G + 
Sbjct: 777 ATPIPRTLHMSMLGVRDLSVIETPPANRYPVQTYVMEQNLGAVREAVER---EMARGGQV 833

Query: 486 YWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +++  ++   EKK    + ++           + I   HG+M++   E+ +  F  G   
Sbjct: 834 FYLYNRVATIEKKVDELQQLIP---------DARIGYAHGQMTEGQLENTLFQFIEGEYD 884

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LS 601
           +L+ TT+IE G+D+ + + + +ENA+H GL+QL+QLRGRVGR   ++    LY P   L+
Sbjct: 885 VLVTTTIIETGVDMPNVNTLFVENADHMGLSQLYQLRGRVGRSNRVAYAYFLYQPNKVLN 944

Query: 602 KNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
           + S  RL  +K+ TE   GF IA  DL  R  G +LG +Q G
Sbjct: 945 EVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGSQQHG 986


>gi|329117227|ref|ZP_08245944.1| transcription-repair coupling factor [Streptococcus parauberis NCFD
           2020]
 gi|326907632|gb|EGE54546.1| transcription-repair coupling factor [Streptococcus parauberis NCFD
           2020]
          Length = 1167

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 156/444 (35%), Positives = 242/444 (54%), Gaps = 29/444 (6%)

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
           N +++ R  K  +  +   E +A D+LL     L   R Q K   G   + + ++     
Sbjct: 554 NKLNDGRFQKTKQKVTKQVEEIA-DDLLK----LYAERSQLK---GYQFSPDDELQASFE 605

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            N  F  T  Q  + K+I +DM   + M R+L GDVG GKT VA+ A   AV    Q  I
Sbjct: 606 DNFAFVETDDQIRSSKEIKRDMESSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAI 665

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  +LAQQHYE  K+  ++  + V++++    +  +   L+R+A G+  IIIGTH L 
Sbjct: 666 LVPTTVLAQQHYENFKERFEDYPVEVDVLSRFRSKKEQTATLDRLAKGRVDIIIGTHRLL 725

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              + +  L L+++DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S
Sbjct: 726 SKDVIFSDLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLS 785

Query: 447 KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRS 502
            I   P  R P++T ++  N   + E I R    +  G + +++  +++  +KK +  + 
Sbjct: 786 VIETPPTNRYPVQTYVMETNPGIVREAIIR---EMDRGGQVFYVYNKVDTIDKKVAQLQE 842

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           ++I  +HG+MS+I  E+ +  F +G   +L+ATT+IE G+D+ + + 
Sbjct: 843 LVPE---------ATIGFVHGQMSEIQLENTLIDFISGDYDVLVATTIIETGVDISNVNT 893

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DG 617
           + +ENA+H GL+ L+QLRGRVGR   I+   L+Y P   LS+ S  RL  +K  TE   G
Sbjct: 894 LFVENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLSEISEKRLEAIKGFTELGSG 953

Query: 618 FLIAEEDLKQRKEGEILGIKQSGM 641
           F IA  DL  R  G ILG  QSG 
Sbjct: 954 FKIAMRDLSIRGAGNILGASQSGF 977


>gi|289523176|ref|ZP_06440030.1| transcription-repair coupling factor [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503719|gb|EFD24883.1| transcription-repair coupling factor [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 1049

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 155/439 (35%), Positives = 238/439 (54%), Gaps = 23/439 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A  +  L   ++ KK  G P   +G +++   +  P+  T  Q  AI++I +DM +   
Sbjct: 475 VAADLVSLYALRELKK--GFPFPKDGDMSRHFEKTFPYKETSDQLKAIEEIKRDMEKPVP 532

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+L GDVG GKT VAL A   AVE G Q  ++ P  +LA+QHYE       +  I VE
Sbjct: 533 MDRVLVGDVGFGKTEVALRAAIKAVEGGKQVAVLVPTTLLAEQHYENFIARIGDMPIRVE 592

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            ++    QA +R  LE    G   I+IGTH L Q  +Q+  L LVI+DE+HRFGV+Q+  
Sbjct: 593 QLSRFEGQAKQRLILEDTKKGLVDILIGTHRLLQRDVQFKDLGLVIIDEEHRFGVKQKEL 652

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI- 472
           L +      VL ++ATPIPRTL +   G  DIS +   P  R+P+ TV+ P    D ++ 
Sbjct: 653 LKKLRAEVDVLSISATPIPRTLYMALSGIRDISLLCTPPKERQPVITVVGPWG--DSLVR 710

Query: 473 ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           E +   +S G + +++  +I+  EK+  + + +V           + + IIHG++     
Sbjct: 711 EAIVREISRGGQVFFVYDRIKGIEKRAQSLKKLVPE---------AKVGIIHGQLPKNVL 761

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E  M  F  G   +L+ TT++E G+D+  A+ +I++NA  FGL+QLHQLRGRVGR    +
Sbjct: 762 ERTMIKFLRGDINVLVCTTIVESGLDIARANTLIVDNAHMFGLSQLHQLRGRVGRRSRQA 821

Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
              +LY     L+K +  RL  +        G+++A  DL+ R  G +LGI+Q G  + +
Sbjct: 822 FAYMLYPSDKVLTKEAMQRLEAISECNQLGGGYMLALRDLEIRGGGNLLGIEQHGHVEKI 881

Query: 646 IAQPELHDSLLEIARKDAK 664
             Q  L+  L+E A K+ K
Sbjct: 882 GFQ--LYYKLIEDAMKNLK 898


>gi|81300135|ref|YP_400343.1| transcription-repair coupling factor [Synechococcus elongatus PCC
            7942]
 gi|81169016|gb|ABB57356.1| transcription-repair coupling factor [Synechococcus elongatus PCC
            7942]
          Length = 1153

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 20/447 (4%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            + LL +  Q  ++ G     +    Q++  + P+ PT  Q  A++ + +DM     M R+
Sbjct: 570  VDLLKLYAQRSQQEGHAYPPDQPWQQELEESFPYQPTADQLKAVEAVKRDMESPQPMDRL 629

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GDVG GKT VA+ A+  AV AG Q  ++AP  IL QQHY  +K+      I + ++  
Sbjct: 630  VCGDVGFGKTEVAVRAIFKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYPIQIGLLNR 689

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                + R+   +R+A G+  +++GTH L     Q+  L L++VDE+ RFGV Q+ K+   
Sbjct: 690  FRTASERQNIQQRLATGELDVVVGTHQLLSKGTQFRDLGLLVVDEEQRFGVNQKEKIKAL 749

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             T   VL ++ATPIPRTL +   G  ++S IT  P  R+PIKT ++P + ++ V   +  
Sbjct: 750  KTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLMPYD-LEAVRTAISQ 808

Query: 478  VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             +  G + +++ P++E        ++  R   L E   S  IA+ HG+M + + E+ M +
Sbjct: 809  EIDRGGQVFYVVPRVE-----GIEAIATR---LQEMLPSLRIAVAHGQMPEGELEATMLA 860

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F N    ++I TT+IE G+D+   + I+IE+A+ FGL+QL+QLRGRVGR   I +   L+
Sbjct: 861  FNNNEADVMICTTIIESGLDIPRVNTILIEDAQRFGLSQLYQLRGRVGRA-GIQAHAWLF 919

Query: 597  HPP---LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIA 647
            +P    LS  +  RL  ++       G+ +A  DL+ R  G +LG++QSG  +   F + 
Sbjct: 920  YPGETVLSDQARQRLRAIQEFTQLGSGYQLAMRDLEIRGVGNLLGVEQSGQMEAIGFDLY 979

Query: 648  QPELHDSLLEIARKDAKHILTQDPDLT 674
               L +SL EI  +D   +     DL+
Sbjct: 980  MEMLQESLQEIRGQDIPQVDDTQIDLS 1006


>gi|157961369|ref|YP_001501403.1| transcription-repair coupling factor [Shewanella pealeana ATCC
           700345]
 gi|157846369|gb|ABV86868.1| transcription-repair coupling factor [Shewanella pealeana ATCC
           700345]
          Length = 1157

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 148/417 (35%), Positives = 231/417 (55%), Gaps = 25/417 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A ++  +  R+Q +      I++E + AQ    + P+  T  QE+AI+ +L+DM     
Sbjct: 572 VAAELLDVYARRQARPGEACRIDLE-EYAQ-FANSFPYEETVDQETAIEAVLEDMRSPTA 629

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHYE  K    +    +E
Sbjct: 630 MDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTLLAQQHYENFKDRFADWPFKIE 689

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +++       + + ++ +  G+  I+IGTH L Q   ++  L L+++DE+HRFGV+Q+ K
Sbjct: 690 VMSRFKTAKEQTQVMKELLDGKVDIVIGTHKLLQSEAKFENLGLLVIDEEHRFGVRQKEK 749

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           +        +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   DE   
Sbjct: 750 IKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTF---VREYDEATI 806

Query: 474 RLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
           R + +L E   G + Y++   +E  EK+ +    ++           + +   HG+M + 
Sbjct: 807 R-EALLREILRGGQVYFLHNSVETIEKRAAEISELLPE---------ARVVTAHGQMRER 856

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           + E VM  F +    +L+ TT+IE GIDV  A+ I+IE A++FGLAQLHQLRGRVGR   
Sbjct: 857 ELERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIVIERADNFGLAQLHQLRGRVGRSHH 916

Query: 589 ISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            +   L+  HP  ++K++  RL  +   ED   GF++A +DL+ R  GE+LG +QSG
Sbjct: 917 QAYAYLMTPHPKSMTKDARKRLEAIGALEDLGAGFMLATQDLEIRGAGELLGDEQSG 973


>gi|188534138|ref|YP_001907935.1| transcription-repair coupling factor [Erwinia tasmaniensis Et1/99]
 gi|188029180|emb|CAO97052.1| Transcription-repair coupling factor (ATP-dependent helicase mfd)
           [Erwinia tasmaniensis Et1/99]
          Length = 1148

 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 149/406 (36%), Positives = 218/406 (53%), Gaps = 13/406 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q    + PF  T  Q  AI  +L DM Q   M R++ 
Sbjct: 568 LLDIYAQRAAKTGFAFKHDKQQYQLFCESFPFETTIDQAQAINAVLSDMCQPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+  +    N  I +E+++   
Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPIRIEMMSRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + + L     G+  I+IGTH L Q+ I++  L L+IVDE+HRFGV+ + ++     
Sbjct: 688 TAKEQAQVLADAQEGKVDILIGTHKLLQNEIKWRDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT +   + +      L+ VL
Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDDLSVREAILREVL 807

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G + Y++   +E     N      R + L     + +AI HG+M + + E VM+ F +
Sbjct: 808 -RGGQVYYLYNDVE-----NIEKAATRLSELVPE--ARVAIGHGQMRERELERVMNDFHH 859

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP 598
               +L+ TT+IE GID+  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL  HP
Sbjct: 860 QRFNVLVCTTIIETGIDIPTANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             ++ +++ RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 920 KSMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEGQSG 965


>gi|258509516|ref|YP_003172267.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG]
 gi|257149443|emb|CAR88416.1| Transcription-repair coupling factor [Lactobacillus rhamnosus GG]
 gi|259650784|dbj|BAI42946.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG]
          Length = 1175

 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 149/439 (33%), Positives = 239/439 (54%), Gaps = 23/439 (5%)

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
           N  K    EW    R   A  E +A ++  L  +++ +K  G     +  + QK     P
Sbjct: 559 NVNKLGGTEWQKTKRIVAARIEDIADELIDLYAKREAEK--GYAFGPDDDLQQKFEDEFP 616

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  + K+I +DM +   M R+L GDVG GKT VAL A   AV+ G Q  I+ P 
Sbjct: 617 YPETPDQLRSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPT 676

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILAQQH++ +K    +  + + +++        +  ++ + +G   I++GTH L    +
Sbjct: 677 TILAQQHFDTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDV 736

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+++DE+ RFGV+ + ++ Q  +   VL +TATPIPRTL ++ LG  D+S I  
Sbjct: 737 AFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIET 796

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R PI+T ++  N   I E IER    +  G + +++  ++E+         +ER  
Sbjct: 797 PPTNRYPIQTFVMEQNPGVIREAIER---EMERGGQVFYLHNRVED---------MERTV 844

Query: 509 SLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           S  E     +SI   HG+M++   E+V+  F +G   +L+ TT+IE G+D+ +A+ +IIE
Sbjct: 845 SQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIE 904

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIA 621
           NA+H+GL+QL+QLRGR+GR   ++    +Y P   L++ +  RL  +K+ TE   GF IA
Sbjct: 905 NADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIA 964

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL  R  G +LG +Q G
Sbjct: 965 MRDLSIRGAGNLLGKQQHG 983


>gi|311086031|gb|ADP66113.1| transcription-repair coupling factor [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086605|gb|ADP66686.1| transcription-repair coupling factor [Buchnera aphidicola str.
           TLW03 (Acyrthosiphon pisum)]
          Length = 760

 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 236/431 (54%), Gaps = 23/431 (5%)

Query: 219 EWTSPARE--RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
           +W     +  +  YD   A Q+  +  +++ K       N+E         +  F  T  
Sbjct: 162 DWNKEKHKISKTVYDH--AAQLLHIYAKRESKTGFAFKKNIEK--YDLFCNDCSFKTTSD 217

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   +K +L+DMS+   M R++ GDVG GKT +A+ A   AV    Q  I+ P  +LAQQ
Sbjct: 218 QNEVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQ 277

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY+  K    N  + + I++    Q  +    +   +G+ +IIIGTH L   +I++  L 
Sbjct: 278 HYKNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLG 337

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+I+DE+HRFGV  +  + +  +   +L +TATPIPRTL +   G  D+S I + PA R 
Sbjct: 338 LLIIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRL 397

Query: 457 PIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            IKT    I     ++ R  ++  +S G + Y+I  +++     N  ++ ER + L    
Sbjct: 398 AIKTF---IQEYSPILIRKTILREISRGGQVYYIYNKVQ-----NIMNIAERLSILIPE- 448

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            +SI I HG+M +ID + VM+ F N    +LI TT+IE G+D+  A+ IIIEN++HFGL+
Sbjct: 449 -ASIKIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLS 507

Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QLHQLRGR+GR    +  +LL +    ++ ++  RL  + + ++   GF ++ +DL+ R 
Sbjct: 508 QLHQLRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRG 567

Query: 630 EGEILGIKQSG 640
            GEILG +QSG
Sbjct: 568 VGEILGKEQSG 578


>gi|152985046|ref|YP_001347529.1| transcription-repair coupling factor [Pseudomonas aeruginosa PA7]
 gi|150960204|gb|ABR82229.1| transcription-repair coupling factor [Pseudomonas aeruginosa PA7]
          Length = 1148

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 143/381 (37%), Positives = 215/381 (56%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q+SAI+ ++ DM     M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 597 GFPFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVL 656

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A  ++A G+  I+IGTH L Q
Sbjct: 657 VPTTLLAQQHYNSFRDRFADWPVNVEVMSRFKSAKEVESAARQLAEGKIDILIGTHKLLQ 716

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + +++  L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 717 EDVRFANLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 776

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
           I   PA R  ++T +  + + + VI E L   L  G + Y++  +++  EK   +   +V
Sbjct: 777 IATPPARRLSVRTFV--MEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELV 834

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + I I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+
Sbjct: 835 PE---------ARIGIGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIL 885

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619
           IE A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + N +D   GF+
Sbjct: 886 IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFV 945

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 946 LATHDLEIRGAGELLGDGQSG 966


>gi|330445693|ref|ZP_08309345.1| transcription-repair coupling factor [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489884|dbj|GAA03842.1| transcription-repair coupling factor [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 1143

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 141/380 (37%), Positives = 214/380 (56%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P
Sbjct: 594 PYEETYDQALAINAVLSDMCQTKVMDRLVCGDVGFGKTEVAMRAAFVAVDNNKQVTVLVP 653

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQH+E  +    NT I VE+++       +++ L  +  G+  I+IGTH L   S
Sbjct: 654 TTLLAQQHFENFRDRFANTPIRVEVLSRFKTAKEQKQILADVEEGKVDILIGTHKLLNSS 713

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y+ L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I 
Sbjct: 714 VNYHDLGLLIVDEEHRFGVRQKEKIKAIRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 773

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVE 505
             PA R  IKT    + + ++ + R  V+  +S G + Y++  +++  EK   +   ++ 
Sbjct: 774 TPPARRLAIKTF---VRQSEDAVIREAVLREISRGGQVYFLHNEVDTIEKTTEDLAKLIP 830

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +   HG+M + + E +M  F +    +L+ TT+IE GIDV  A+ II+
Sbjct: 831 E---------ARVTFAHGQMRERELEKIMGDFYHQRFNVLVCTTIIETGIDVPTANTIIM 881

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLI 620
           + A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF +
Sbjct: 882 DRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISSLEDLGAGFTL 941

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG +QSG
Sbjct: 942 ATHDLEIRGAGELLGDEQSG 961


>gi|262198049|ref|YP_003269258.1| transcription-repair coupling factor [Haliangium ochraceum DSM 14365]
 gi|262081396|gb|ACY17365.1| transcription-repair coupling factor [Haliangium ochraceum DSM 14365]
          Length = 1257

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 147/436 (33%), Positives = 237/436 (54%), Gaps = 37/436 (8%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q+ AI ++L DM  +  M R++ GDVG GKT VAL A   AV  G QA ++AP 
Sbjct: 685  FEETPDQQRAIDEVLADMESERPMDRLVCGDVGYGKTEVALRACFKAVAGGKQAALLAPT 744

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +L +QHY  + +      + V  ++    +A +   ++ +A G   +++GTH +    +
Sbjct: 745  TVLVEQHYATVCERFAGWPVSVGRLSRFQSRAEQLDTIKGLAAGTVDLVVGTHRVLSKDV 804

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L L+++DE+ RFGV  + +L +  T   VL +TATPIPRTL L   G  D+S I  
Sbjct: 805  RFKDLGLLVIDEEQRFGVTHKERLKRVRTQLDVLTLTATPIPRTLHLAMSGLRDLSIIAT 864

Query: 451  KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI---------------EE 494
             PA R+ ++T +  ++  D V+ E ++  L  G + +++CP+I               + 
Sbjct: 865  PPADRRAVRTFVAQVD--DGVLREGIRRELGRGGQVFFVCPRIGADPAPSKGKVKGKGKS 922

Query: 495  KKESNFRSVVER----FNSLHEHF-----TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            + E+  R  V R     +   EH       + +A+ HG+MS    E VM  F +G  ++L
Sbjct: 923  QGETARR--VRRGDISLDEWAEHLRALVPEARVAVAHGQMSAEALEKVMIDFVSGNLEIL 980

Query: 546  IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKN 603
            ++TT++E G+D+  A+ + ++ A+ FGLAQL+QLRGR+GR ++ + C LL  PP  LS +
Sbjct: 981  VSTTIVESGLDIARANTMFVDRADSFGLAQLYQLRGRIGRSKQRAFCYLLVPPPEKLSSD 1040

Query: 604  SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG---MPKFLIAQPELHDSLLE 657
            +  RL  L+   +   GF IA  DL+ R  GE+LG KQSG      F      L +++ E
Sbjct: 1041 ARRRLETLQRFSELGAGFQIASHDLEIRGGGELLGAKQSGAIAAVGFEAYAAMLEEAVAE 1100

Query: 658  IARKDAKHILTQDPDL 673
            +   DA  +  +DP+L
Sbjct: 1101 LRSGDAGLVRPRDPEL 1116


>gi|311087715|gb|ADP67794.1| transcription-repair coupling factor [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 760

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 236/431 (54%), Gaps = 23/431 (5%)

Query: 219 EWTSPARE--RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
           +W     +  +  YD   A Q+  +  +++ K       N+E         +  F  T  
Sbjct: 162 DWNKEKHKISKTVYDH--AAQLLHIYAKRESKTGFAFKKNIEK--YDLFCNDCSFKTTSD 217

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   +K +L+DMS+   M R++ GDVG GKT +A+ A   AV    Q  I+ P  +LAQQ
Sbjct: 218 QNEVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQ 277

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY+  K    N  + + I++    Q  +    +   +G+ +IIIGTH L   +I++  L 
Sbjct: 278 HYKNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLG 337

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+I+DE+HRFGV  +  + +  +   +L +TATPIPRTL +   G  D+S I + PA R 
Sbjct: 338 LLIIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRL 397

Query: 457 PIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            IKT    I     ++ R  ++  +S G + Y+I  +++     N  ++ ER + L    
Sbjct: 398 AIKTF---IQEYSPILIRKTILREISRGGQVYYIYNKVQ-----NIMNIAERLSILIPE- 448

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            +SI I HG+M +ID + VM+ F N    +LI TT+IE G+D+  A+ IIIEN++HFGL+
Sbjct: 449 -ASIKIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLS 507

Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QLHQLRGR+GR    +  +LL +    ++ ++  RL  + + ++   GF ++ +DL+ R 
Sbjct: 508 QLHQLRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRG 567

Query: 630 EGEILGIKQSG 640
            GEILG +QSG
Sbjct: 568 VGEILGKEQSG 578


>gi|163793172|ref|ZP_02187148.1| Transcription-repair coupling factor [alpha proteobacterium BAL199]
 gi|159181818|gb|EDP66330.1| Transcription-repair coupling factor [alpha proteobacterium BAL199]
          Length = 1162

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 149/441 (33%), Positives = 232/441 (52%), Gaps = 24/441 (5%)

Query: 232  ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            ++  G IA+   R+  + +   P+N    +  +     P++ T+ Q  AI D+L D+   
Sbjct: 579  DMAEGLIAIAAEREVRRTQ---PLNPPSGVYDEFCARFPYTETEDQLRAIDDVLSDLGSG 635

Query: 292  NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
              M R++ GDVG GKT VAL A   AV  G Q  ++ P  +L +QH+   +   Q   I 
Sbjct: 636  KPMDRLVCGDVGFGKTEVALRAALVAVMQGYQVAVVVPTTLLCRQHFRGFRDRFQGLPIR 695

Query: 352  VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
            VE ++  +      +  + IA G  ++++GTHA+    + +  L LV+VDE+  FGV Q+
Sbjct: 696  VEQLSRLVTPKDASEVRKGIASGDVNLVVGTHAVLSKQVSFSNLGLVVVDEEQHFGVAQK 755

Query: 412  LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             +L       HVL MTATPIPRTL +   G  ++S I   P  R  ++T ++P    D V
Sbjct: 756  ERLKDLRKEVHVLTMTATPIPRTLQMALSGVRELSLIATPPVDRLAVRTFVMP---YDGV 812

Query: 472  IERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
            I R + +L E   G K +++CP++E     +   V +R   L       + + HGRM+  
Sbjct: 813  IIR-EAILRERYRGGKTFYVCPRVE-----DLVRVHDRLTKLVPEV--QVGVAHGRMTPT 864

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            + E VM +F +G   +L++T ++E G+D+  A+ I+I  A+ FGLAQL+QLRGRVGR + 
Sbjct: 865  ELEDVMTAFTDGGFDVLLSTNIVESGLDIASANTIVIHRADMFGLAQLYQLRGRVGRSKT 924

Query: 589  ISSCILLYHP-----PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
             +   L  HP     P++K     +  L N   GF +A  D+  R  G +LG +QSG  K
Sbjct: 925  RAYGYLTTHPSKVLTPVAKRRLEVMQTLDNLGAGFSLASHDMDIRGAGNLLGEEQSGHVK 984

Query: 644  FLIAQPELHDSLLEIARKDAK 664
             +    EL+  LL  A + AK
Sbjct: 985  EV--GIELYQELLREAVEAAK 1003


>gi|75908979|ref|YP_323275.1| transcription-repair coupling factor [Anabaena variabilis ATCC 29413]
 gi|75702704|gb|ABA22380.1| transcription-repair coupling factor [Anabaena variabilis ATCC 29413]
          Length = 1188

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 216/381 (56%), Gaps = 19/381 (4%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  A++D+ +DM     M R++ GDVG GKT VA+ A+  AV +G Q  ++
Sbjct: 636  SFPYQATTDQLKAVQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTSGKQVALL 695

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            AP  IL QQHY  IK+      + V ++        RR   +R+A G+  I++GTH L  
Sbjct: 696  APTTILTQQHYHTIKERFAPYPVNVGLLNRFRTAEERRNIQKRLATGELDIVVGTHQLLG 755

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             S+ +  L L+++DE+ RFGV Q+ K+    T   VL ++ATPIPRTL ++  G  ++S 
Sbjct: 756  KSVNFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSL 815

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
            IT  P  R+PIKT + P N  + V   ++  L  G + +++ P+++  E+  +N R +V 
Sbjct: 816  ITTPPPTRRPIKTHLSPRNP-ESVRSAIRQELDRGGQVFYVVPRVDGIEEITANLREMVP 874

Query: 506  RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                      +  AI HG+M + + ES M +F NG   +L+ TT+IE G+D+   + I+I
Sbjct: 875  ---------GARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILI 925

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLK---NTEDGFL 619
            E+A  FGL+QL+QLRGRVGR   I +   L++P    LS  +  RL  ++       G+ 
Sbjct: 926  EDAHRFGLSQLYQLRGRVGRA-GIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGSGYQ 984

Query: 620  IAEEDLKQRKEGEILGIKQSG 640
            +A  D++ R  G +LG +QSG
Sbjct: 985  LAMRDMEIRGVGNLLGAEQSG 1005


>gi|304310931|ref|YP_003810529.1| Transcription repair coupling factor [gamma proteobacterium HdN1]
 gi|301796664|emb|CBL44876.1| Transcription repair coupling factor [gamma proteobacterium HdN1]
          Length = 1162

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 145/385 (37%), Positives = 214/385 (55%), Gaps = 17/385 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q  +    F  T  QESAI+ ++ DM+    M R++ GDVG GKT VA+ A   AV++G 
Sbjct: 599 QAFVDGFRFEETPDQESAIQAVMADMTSPRPMDRLVCGDVGFGKTEVAMRAAFIAVQSGK 658

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  +LAQQHYE +K    NT + +E+++       + +AL  +  G+  I++GT
Sbjct: 659 QVAILVPTTLLAQQHYETLKDRFSNTPVNIEVLSRFRTSKEQTRALALLEEGRIDIVVGT 718

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q++I++  L L+IVDE+HRFGV+ + KL        +L +TATPIPRTL +     
Sbjct: 719 HKLLQENIRFKDLGLIIVDEEHRFGVRHKEKLKAIRADVDMLTLTATPIPRTLNMALSSI 778

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNF 500
            D+S I   PA R  IKT +    R   + E +   L  G + Y++  ++   EK   + 
Sbjct: 779 RDLSIIATPPAKRLSIKTFVREA-RDSLIKEAILRELLRGGQVYYLHNEVSTIEKTAQHI 837

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            S+V           + +AI HG+M + + E VM  F +    +L+ TT+IE GIDV  A
Sbjct: 838 ESLVPE---------ARVAIAHGQMRERELERVMTDFYHKRFNVLVCTTIIETGIDVPSA 888

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED-- 616
           + I+++ A+  GLAQLHQLRGRVGR    +   LL      LS +++ RL  +    D  
Sbjct: 889 NTIVMDRADKLGLAQLHQLRGRVGRSHHQAYAYLLTPNAKALSDDAHKRLEAITLAHDLG 948

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640
            GF +A  DL+ R  GE+LG +QSG
Sbjct: 949 AGFTLASHDLEIRGAGELLGDEQSG 973


>gi|148653434|ref|YP_001280527.1| transcription-repair coupling factor [Psychrobacter sp. PRwf-1]
 gi|148572518|gb|ABQ94577.1| transcription-repair coupling factor [Psychrobacter sp. PRwf-1]
          Length = 1271

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 161/465 (34%), Positives = 247/465 (53%), Gaps = 25/465 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++ L     +A ++  +  R+Q K+  GI   VE    +       F  T  Q 
Sbjct: 666  KWDKAKQKALEQIHDVAAELLNMQARRQAKE--GIHFKVETAQYELFASQFAFEETPDQA 723

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LA QH 
Sbjct: 724  NAIDAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVNSGYQVAVLVPTTLLAGQHE 783

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +  K    +  I VE ++    + ++ + LE +A G+  I+IGTH L Q  +++  L L+
Sbjct: 784  DNFKDRFADWPIRVETLSRFGGKKYQDQVLEDLAAGKVDIVIGTHKLLQKDVKFANLGLM 843

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+HRFGV+ + ++    +    L MTATPIPRTL +   G  D+S I   PA R  I
Sbjct: 844  IVDEEHRFGVRHKERIKAIQSDVDSLSMTATPIPRTLNMALTGMRDMSIIATPPARRLSI 903

Query: 459  KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
            KT +  + + ++++ E +   L  G + Y +   +   E+   N R +V           
Sbjct: 904  KTFV--MQKTNQLMKEAILRELLRGGQVYLLHNDVASIERMAENIRELVPE--------- 952

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + + + HG+M++   E VM  F +    +L+ TT+IE GIDV +A+ IIIE A+ FGLAQ
Sbjct: 953  ARVGVAHGQMNERGLEQVMQQFYHKKFNVLVCTTIIETGIDVPNANTIIIERADKFGLAQ 1012

Query: 576  LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
            LHQLRGRVGR    + C LL      L  ++  RL+ ++       GF++A EDL+ R  
Sbjct: 1013 LHQLRGRVGRSHHQAYCYLLVPSVKGLKGDAKKRLTAIERANTLGAGFMLASEDLEIRGA 1072

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            GEILG +QSG  + +     L+  +LE A K  K    ++PDL +
Sbjct: 1073 GEILGKQQSGNMQAIGF--SLYMDMLERATKAIK--AGKEPDLNT 1113


>gi|89075823|ref|ZP_01162207.1| putative transcription-repair coupling factor [Photobacterium sp.
           SKA34]
 gi|89048444|gb|EAR54020.1| putative transcription-repair coupling factor [Photobacterium sp.
           SKA34]
          Length = 1153

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 144/430 (33%), Positives = 232/430 (53%), Gaps = 23/430 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+       +A ++  +  +++ K   G    ++ +   +     P+  T  Q  
Sbjct: 556 WSKARRKAAEKVRDVAAELLDVYAKRELKP--GFKFTLDREAYAEFSAGFPYEETYDQAL 613

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQH+E
Sbjct: 614 AINAVMSDMCQTKVMDRLVCGDVGFGKTEVAMRAAFVAVDNNKQVTVLVPTTLLAQQHFE 673

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    NT + VE+++       +++ L  +  G+  I+IGTH L   S+ Y+ L L++
Sbjct: 674 NFRDRFANTPVRVEVLSRFKTSKEQKQILADVEEGKIDILIGTHKLLNSSVNYHDLGLLV 733

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 734 VDEEHRFGVRQKEKIKAIRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 793

Query: 460 TVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T    + + D+ + R  ++  +S G + Y++  +++  EK   +   ++           
Sbjct: 794 TF---VRQSDDAVIREAILREISRGGQVYFLHNEVDSIEKTTEDLAKLIPE--------- 841

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I   HG+M + + E +M  F +    +L+ TT+IE GIDV  A+ II++ A++ GLAQ
Sbjct: 842 ARITFAHGQMRERELEKIMGDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQ 901

Query: 576 LHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF +A  DL+ R  
Sbjct: 902 LHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISSLEDLGAGFTLATHDLEIRGA 961

Query: 631 GEILGIKQSG 640
           GE+LG +QSG
Sbjct: 962 GELLGDEQSG 971


>gi|170726164|ref|YP_001760190.1| transcription-repair coupling factor [Shewanella woodyi ATCC 51908]
 gi|169811511|gb|ACA86095.1| transcription-repair coupling factor [Shewanella woodyi ATCC 51908]
          Length = 1157

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 139/380 (36%), Positives = 214/380 (56%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  QE++I  +L DMS    M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 604 SFPFEETVDQETSINAVLTDMSSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAIL 663

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  K    +  + +E+++       ++  LE +++G+  I+IGTH L Q
Sbjct: 664 VPTTLLAQQHFENFKDRFADWPVKIEVMSRFKTAKEQKAVLEDLSNGKVDIVIGTHKLLQ 723

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              ++  L L+++DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 724 SEAKFENLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSI 783

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  +KT +   +    + E L   +  G + Y++   +E  EK+ +    ++ 
Sbjct: 784 IATPPAKRLAVKTFVREYDNA-AIREALLREILRGGQVYFLHNTVETIEKRAAEISELLP 842

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +   HG+M + + E VM  F +    +L+ TT+IE GID+  A+ I+I
Sbjct: 843 E---------ARVITAHGQMRERELEKVMSDFYHQRFNVLVCTTIIETGIDIPSANTIVI 893

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   L+  HP  ++K++  RL  +   ED   GF++
Sbjct: 894 ERADKFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKSMTKDARKRLEAIGALEDLGAGFML 953

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A +DL+ R  GE+LG +QSG
Sbjct: 954 ATQDLEIRGAGELLGDEQSG 973


>gi|114320951|ref|YP_742634.1| transcription-repair coupling factor [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227345|gb|ABI57144.1| transcription-repair coupling factor [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 1166

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 209/386 (54%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q      PF  T  QESAI  +  DM     M R++ GDVG GKT VA+ A    ++ G 
Sbjct: 605 QAFADAFPFEETPDQESAIAAVEADMRSSRPMDRVVCGDVGFGKTEVAMRAAFMGIQDGR 664

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  +M P  +LAQQH++  +    +  + VE+++           L  +A G+  I+IGT
Sbjct: 665 QVAVMVPTTLLAQQHFQNFRDRFSDWPVRVEVLSRFRSTKDTNAVLRDLADGKVDIVIGT 724

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L QDS++Y  L LVI+DE+HRFGV+Q+ KL +      +L +TATPIPRTL ++  G 
Sbjct: 725 HKLLQDSVKYKDLGLVIIDEEHRFGVRQKEKLKKLRAEVDILTLTATPIPRTLNMSLAGI 784

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D+S I   PA R  +KT    +N+ D  I  E  +  L  G + Y++         ++ 
Sbjct: 785 RDLSIIATPPARRLAVKTF---VNQWDPAIIQEACQRELKRGGQIYFL--------HNDL 833

Query: 501 RSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            S+      L E    + + + HG+M + D E VM  F +    +L+ +T+IE GIDV  
Sbjct: 834 DSIDRIARELEELVPDARVDVAHGQMPERDLERVMLDFYHQRFNILVCSTIIESGIDVPT 893

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED- 616
           A+ I+I  A+  GLAQLHQLRGRVGR    +   L+  P   ++ ++  RL  + N ED 
Sbjct: 894 ANTILINRADKLGLAQLHQLRGRVGRSHHRAYAYLIAPPEKAMTADAKKRLEAISNLEDL 953

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG +QSG
Sbjct: 954 GVGFALASHDLEIRGAGELLGEEQSG 979


>gi|296328784|ref|ZP_06871298.1| transcription-repair coupling factor [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296154119|gb|EFG94923.1| transcription-repair coupling factor [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 981

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 224/375 (59%), Gaps = 13/375 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF+ T +Q  AI+D+ +DM     M R++ GDVG GKT VA+ A   AV  G Q +++ P
Sbjct: 452 PFTETPAQLKAIEDVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDGKQVILLVP 511

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHYE   +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D 
Sbjct: 512 TTVLAEQHYERFSERFKNYPVHIEILSRVQSKKEQVESLKRIENGSADLVIGTHRLLSDD 571

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  + L+I+DE+ +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I 
Sbjct: 572 IRFKDIGLLIIDEEQKFGVKAKEKLKKIKGNLDVLTLTATPIPRTLNLSLLGIRDLSVID 631

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P GR+ I T  I  N+  I E+I  L  +  EG + ++I   + ++ ES  + + E  
Sbjct: 632 TSPEGRQKIHTEYIDNNKNFIKEII--LSEISREG-QVFYIFNSV-KRMESKVKEIRE-- 685

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L E+    ++ IHG+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +IIE 
Sbjct: 686 -LLPEYI--KVSYIHGQMLPRDIKKNIQDFENGNVDVLVATTIIENGIDIENANTMIIEG 742

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDL 625
            E  GL+Q++QLRGR+GR  + S C +L +   +KN+  R   ++  ++  G  +A ED 
Sbjct: 743 VEKLGLSQVYQLRGRIGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGIDLAMEDS 802

Query: 626 KQRKEGEILGIKQSG 640
           K R  GEILG KQ G
Sbjct: 803 KIRGVGEILGEKQHG 817


>gi|163802119|ref|ZP_02196015.1| transcription-repair coupling factor [Vibrio sp. AND4]
 gi|159174260|gb|EDP59068.1| transcription-repair coupling factor [Vibrio sp. AND4]
          Length = 1153

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 213/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A +   Q  I+
Sbjct: 599 TFPFEETDDQSMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAIL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  L+ +A G+  I++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  IKT    + + ++ + R  V+  +  G + Y++  Q+E  EK   + + +
Sbjct: 779 IATPPARRLSIKTF---VRQCEDSVVREAVLREIMRGGQVYFLHNQVETIEKTAEDLQKL 835

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +           + + + HG+M + + E +M  F +    +L+ TT+IE GIDV  A+ I
Sbjct: 836 IPE---------ARLTVAHGQMRERELERIMSDFYHQRFNVLVCTTIIETGIDVPTANTI 886

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618
           I++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF
Sbjct: 887 IMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAGF 946

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 947 TLATHDLEIRGAGELLGDEQSG 968


>gi|312864113|ref|ZP_07724348.1| transcription-repair coupling factor [Streptococcus vestibularis
           F0396]
 gi|311100345|gb|EFQ58553.1| transcription-repair coupling factor [Streptococcus vestibularis
           F0396]
          Length = 1066

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 143/379 (37%), Positives = 216/379 (56%), Gaps = 19/379 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           ++ T  Q  +IK++ +DM     M R+L GDVG GKT VA+ A   AV  G Q  I+ P 
Sbjct: 483 YAETVDQLRSIKEVKEDMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QHY   K+  +N  + V+ ++    +  + + +E +A G+  IIIGTH L    +
Sbjct: 543 TVLAHQHYLNFKERFENHAVEVDELSRFRSKKEQNETIENLAKGRIDIIIGTHRLLSKDV 602

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S I  
Sbjct: 603 KFSDLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSIIET 662

Query: 451 KPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R P++T ++  N   I E I R    +  G + ++I  ++E        ++ ++ +
Sbjct: 663 APTNRYPVQTYVMETNPGLIREAILR---EMDRGGQIFYIYNRVE--------TIDKKVS 711

Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            LHE    + I  +HG+MS++  E+ +  F NG   +L+ATT+IE GID+ + + + IEN
Sbjct: 712 ELHELVPEARIGFVHGQMSEVMLENTLLDFLNGDYDVLVATTIIETGIDISNVNTLFIEN 771

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+H GL+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   GF IA 
Sbjct: 772 ADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLDAIKGFTELGSGFKIAM 831

Query: 623 EDLKQRKEGEILGIKQSGM 641
            DL  R  G ILG  QSG 
Sbjct: 832 RDLSIRGAGNILGSSQSGF 850


>gi|26988872|ref|NP_744297.1| transcription-repair coupling factor [Pseudomonas putida KT2440]
 gi|24983679|gb|AAN67761.1|AE016407_5 transcription-repair coupling factor [Pseudomonas putida KT2440]
          Length = 1149

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 143/380 (37%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++AI+ +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 598 GFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVL 657

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A   +A G+  I+IGTH L Q
Sbjct: 658 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQ 717

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +++  L L I+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 718 DDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 777

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   V E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 778 IATPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 836

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+I
Sbjct: 837 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVI 887

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL      +S ++  RL  + NT+D   GF++
Sbjct: 888 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVL 947

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 948 ATNDLEIRGAGELLGEGQSG 967


>gi|167032697|ref|YP_001667928.1| transcription-repair coupling factor [Pseudomonas putida GB-1]
 gi|166859185|gb|ABY97592.1| transcription-repair coupling factor [Pseudomonas putida GB-1]
          Length = 1141

 Score =  230 bits (587), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 143/380 (37%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++AI+ +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 590 GFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVL 649

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A   +A G+  I+IGTH L Q
Sbjct: 650 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQ 709

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +++  L L I+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 710 DDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 769

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   V E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 770 IATPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 828

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+I
Sbjct: 829 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVI 879

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL      +S ++  RL  + NT+D   GF++
Sbjct: 880 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVL 939

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 940 ATNDLEIRGAGELLGEGQSG 959


>gi|223933455|ref|ZP_03625440.1| transcription-repair coupling factor [Streptococcus suis 89/1591]
 gi|223897893|gb|EEF64269.1| transcription-repair coupling factor [Streptococcus suis 89/1591]
          Length = 1164

 Score =  230 bits (587), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 216/377 (57%), Gaps = 21/377 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I +I QDM + + M R+L GDVG GKT VA+ A   AV  G Q  I+ P  +L
Sbjct: 614 TDDQLRSIDEIKQDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   ++      + V++++    +A + K LE++  GQ  I+IGTH L    + + 
Sbjct: 674 AQQHYANFQERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILIGTHRLLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + +L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLLVIDEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNS 509
            R P++T ++  N   I + + R    +  G + Y++  +++  E+K S  + +V     
Sbjct: 794 NRYPVQTYVMETNPSVIRDAMLR---EIDRGGQVYYLYNKVDTIEQKVSELKELVPE--- 847

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 ++I  +HG+MS+I  E+ + +F  G   +L+ TT+IE G+D+ +A+ + IENA+
Sbjct: 848 ------ATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENAD 901

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEED 624
           H GL+ L+QLRGRVGR   I+   L+Y P   L++ +  RL  +K  TE   GF IA +D
Sbjct: 902 HMGLSTLYQLRGRVGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQD 961

Query: 625 LKQRKEGEILGIKQSGM 641
           L  R  G ILG  QSG 
Sbjct: 962 LSIRGAGNILGAAQSGF 978


>gi|326387814|ref|ZP_08209420.1| transcription-repair coupling factor [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207860|gb|EGD58671.1| transcription-repair coupling factor [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 1161

 Score =  230 bits (587), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 155/441 (35%), Positives = 247/441 (56%), Gaps = 26/441 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +AGQ+     ++  ++    P+  +       +   P++ T+ QE AI+D+L DM+    
Sbjct: 571 MAGQLMATAAQRALRQ--ADPLETDPASYGPFVDRFPWNETEDQERAIEDVLGDMASGKP 628

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIV 352
           M R++ GDVG GKT VAL A   A  AG Q  ++AP  +LA+QHY  F+++++    + +
Sbjct: 629 MDRLVCGDVGFGKTEVALRAAFVAAMAGHQVAVVAPTTLLARQHYTSFVERFS-GFPLQI 687

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             ++  +P     +    +A+G   I+IGTHAL   ++++ +L LVIVDE+ RFGV  + 
Sbjct: 688 GRLSRLVPAKEAAETRSGLANGTVDIVIGTHALLSKTVEFRRLGLVIVDEEQRFGVTHKE 747

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           KL +  T  HVL +TATPIPRTL +   G  ++S I   P  R  ++T ++P    D+V+
Sbjct: 748 KLKELKTDVHVLTLTATPIPRTLQMAMSGLRELSTIQTPPVDRLAVRTYVMP---WDDVV 804

Query: 473 ERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            R   +L E   G +++ + P+I +  E      +E +  L+     +++  HG+MS  D
Sbjct: 805 IR-DALLREHQRGGQSFIVVPRIADMPE------MEEWLRLNVPEIRAVS-AHGQMSSSD 856

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
            E  M +F +   ++L++TT+IE GID+  A+ II+  A+ FGLAQL+QLRGRVGRG+  
Sbjct: 857 VEDRMSAFYDKKYEVLLSTTIIESGIDIPSANTIILHRADRFGLAQLYQLRGRVGRGKLR 916

Query: 590 SSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK- 643
           +   L Y  +  LS+ +  RL VL + +    GF +A  DL  R  G +LG +QSG  K 
Sbjct: 917 AYAYLTYPENQALSEIAEKRLKVLGDLDSLGAGFQLASHDLDLRGAGNLLGDEQSGHIKE 976

Query: 644 --FLIAQPELHDSLLEIARKD 662
             F + Q  L D++L     D
Sbjct: 977 VGFELYQSMLEDAILAAKAGD 997


>gi|302023115|ref|ZP_07248326.1| transcription-repair coupling factor [Streptococcus suis 05HAS68]
 gi|330831857|ref|YP_004400682.1| transcription-repair coupling factor [Streptococcus suis ST3]
 gi|329306080|gb|AEB80496.1| transcription-repair coupling factor [Streptococcus suis ST3]
          Length = 1164

 Score =  230 bits (587), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 216/377 (57%), Gaps = 21/377 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I +I QDM + + M R+L GDVG GKT VA+ A   AV  G Q  I+ P  +L
Sbjct: 614 TDDQLRSIDEIKQDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   ++      + V++++    +A + K LE++  GQ  I+IGTH L    + + 
Sbjct: 674 AQQHYANFQERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILIGTHRLLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + +L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLLVIDEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNS 509
            R P++T ++  N   I + + R    +  G + Y++  +++  E+K S  + +V     
Sbjct: 794 NRYPVQTYVMETNPSVIRDAMLR---EIDRGGQVYYLYNKVDTIEQKVSELKELVPE--- 847

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 ++I  +HG+MS+I  E+ + +F  G   +L+ TT+IE G+D+ +A+ + IENA+
Sbjct: 848 ------ATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENAD 901

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEED 624
           H GL+ L+QLRGRVGR   I+   L+Y P   L++ +  RL  +K  TE   GF IA +D
Sbjct: 902 HMGLSTLYQLRGRVGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQD 961

Query: 625 LKQRKEGEILGIKQSGM 641
           L  R  G ILG  QSG 
Sbjct: 962 LSIRGAGNILGAAQSGF 978


>gi|255543481|ref|XP_002512803.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223547814|gb|EEF49306.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 857

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 138/380 (36%), Positives = 219/380 (57%), Gaps = 17/380 (4%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            P+ PT  Q  A  D+ +D++++   M R++ GDVG GKT VAL A+   V AG QA+++
Sbjct: 268 FPYEPTPDQFQAFNDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 327

Query: 328 APIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           AP  +LA+QH+E I +++++ + I V +++    Q+ +    E I  G  +I++GTH+L 
Sbjct: 328 APTIVLAKQHFEVISERFSKYSNIKVGLLSRFQTQSVKEMYYEMIKQGDLNIVVGTHSLL 387

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              + Y  L L++VDE+ RFGV+Q+ K+    T+  VL ++ATPIPRTL L   G  D S
Sbjct: 388 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDAS 447

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I+  P  R P+KT +   ++ ++VI  +K  L    + +++ P I        + + E 
Sbjct: 448 LISTAPPERVPVKTFLSAYSK-EKVISAIKYELDRDGQVFYVLPLI--------KGLEEV 498

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            + L + F     AI HG+      E  M+ F  G  K+LI T ++E G+D+ +A+ III
Sbjct: 499 MDFLEQSFPKVEKAIAHGKQYSKQLEETMEKFVQGEIKILICTNIVESGLDIQNANTIII 558

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLI 620
           ++ +HFGLAQL+QLRGRVGR ++ +   L Y     LS  +  RL  L+  ++   GF +
Sbjct: 559 QDIQHFGLAQLYQLRGRVGRADKEAYAHLFYPDKSLLSDQALERLKALEECKELGQGFQL 618

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           AE D+  R  G I G +Q+G
Sbjct: 619 AERDMGIRGFGTIFGEQQTG 638


>gi|325277315|ref|ZP_08142941.1| transcription-repair coupling factor [Pseudomonas sp. TJI-51]
 gi|324097550|gb|EGB95770.1| transcription-repair coupling factor [Pseudomonas sp. TJI-51]
          Length = 1149

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 143/380 (37%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++AI+ +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 598 GFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVL 657

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A   +A G+  I+IGTH L Q
Sbjct: 658 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQ 717

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +++  L L I+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 718 DDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 777

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   V E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 778 IATPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 836

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+I
Sbjct: 837 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVI 887

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL      +S ++  RL  + NT+D   GF++
Sbjct: 888 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVL 947

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 948 ATNDLEIRGAGELLGEGQSG 967


>gi|226953095|ref|ZP_03823559.1| transcription-repair coupling factor [Acinetobacter sp. ATCC 27244]
 gi|226836187|gb|EEH68570.1| transcription-repair coupling factor [Acinetobacter sp. ATCC 27244]
          Length = 1153

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 148/428 (34%), Positives = 229/428 (53%), Gaps = 19/428 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++     +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDHIAYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +T + +E+++         K +E +A G+  I++GTH + Q++IQ+  L L+I
Sbjct: 673 SFKDRFADTAVRIEVLSRFGSNKTHLKIIEDLADGKVDIVVGTHKILQENIQFNNLGLMI 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517
           T  +  +  D + E +   L  G + Y++  ++E  E+   N R +V           + 
Sbjct: 793 T-FVQEHTDDSIKEAILRELLRGGQVYFLHNEVETIERAAENIRHLVPE---------AR 842

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ IIIE A+  GLAQLH
Sbjct: 843 VAVAHGQMRERELEQVMQQFYHKDYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQLH 902

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE
Sbjct: 903 QLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGE 962

Query: 633 ILGIKQSG 640
           +LG +QSG
Sbjct: 963 LLGEQQSG 970


>gi|109898045|ref|YP_661300.1| transcription-repair coupling factor [Pseudoalteromonas atlantica
           T6c]
 gi|109700326|gb|ABG40246.1| transcription-repair coupling factor [Pseudoalteromonas atlantica
           T6c]
          Length = 1160

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 146/384 (38%), Positives = 214/384 (55%), Gaps = 15/384 (3%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q+ AI  ++QDM   N M R++ GDVG GKT VA+ A   A   G 
Sbjct: 602 QAFSDSFPFEETLDQQQAINAVIQDMGSSNAMDRLVCGDVGFGKTEVAMRAAFIAANQGK 661

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  +LAQQHYE  K    +    +E+++       ++  +  +  G+  I++GT
Sbjct: 662 QVAILVPTTLLAQQHYENFKDRFADWPFKIEVMSRFGSAKDQKGVMAGLDDGKVDIVVGT 721

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L LVI+DE+HRFGV+Q+ K     +   +L +TATPIPRTL +   G 
Sbjct: 722 HKLLQSDVKFDDLGLVIIDEEHRFGVRQKEKFKALRSDVDILTLTATPIPRTLNMALSGM 781

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFR 501
            D+S I   PA R  IKT +    R  E+I E +   +  G + Y++  ++    +S  R
Sbjct: 782 RDLSIIATPPAKRLAIKTFV--NQRSKELIREAIMREILRGGQVYFLHNEV----DSIER 835

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           +  E    + E   + IAI HG+M + + E VM  F +    +L+ TT+IE GIDV  A+
Sbjct: 836 TADEIAEMVPE---ARIAIGHGQMRERELEKVMGDFYHQRHNVLVCTTIIETGIDVPSAN 892

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED--- 616
            II++ A+H GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   
Sbjct: 893 TIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAKKRLDAISSLEDLGA 952

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF +A  DL+ R  GE+LG  Q+G
Sbjct: 953 GFALATHDLEIRGAGELLGDDQTG 976


>gi|148548800|ref|YP_001268902.1| transcription-repair coupling factor [Pseudomonas putida F1]
 gi|148512858|gb|ABQ79718.1| transcription-repair coupling factor [Pseudomonas putida F1]
          Length = 1149

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 143/380 (37%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++AI+ +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 598 GFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVL 657

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A   +A G+  I+IGTH L Q
Sbjct: 658 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQ 717

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +++  L L I+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 718 DDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 777

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   V E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 778 IATPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 836

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+I
Sbjct: 837 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVI 887

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL      +S ++  RL  + NT+D   GF++
Sbjct: 888 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVL 947

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 948 ATNDLEIRGAGELLGEGQSG 967


>gi|313499733|gb|ADR61099.1| Mfd [Pseudomonas putida BIRD-1]
          Length = 1141

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 143/380 (37%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++AI+ +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 590 GFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVL 649

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A   +A G+  I+IGTH L Q
Sbjct: 650 VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQ 709

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +++  L L I+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 710 DDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 769

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   PA R  ++T ++  N+   V E L   L  G + Y++   ++  EK  ++   +V 
Sbjct: 770 IATPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 828

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+I
Sbjct: 829 E---------ARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVI 879

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGLAQLHQLRGRVGR    +   LL      +S ++  RL  + NT+D   GF++
Sbjct: 880 ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVL 939

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 940 ATNDLEIRGAGELLGEGQSG 959


>gi|172087806|ref|YP_206418.2| transcription-repair coupling factor [Vibrio fischeri ES114]
 gi|197337336|ref|YP_002158058.1| transcription-repair coupling factor [Vibrio fischeri MJ11]
 gi|171902389|gb|AAW87530.2| transcription-repair coupling factor [Vibrio fischeri ES114]
 gi|197314588|gb|ACH64037.1| transcription-repair coupling factor [Vibrio fischeri MJ11]
          Length = 1151

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 147/381 (38%), Positives = 212/381 (55%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q+ AI  +L DM Q   M R++ GDVG GKT VA+ A   A     Q  ++
Sbjct: 600 SFPFEETHDQDIAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFLATHNEKQVAVL 659

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ L   A G+  I+IGTH L Q
Sbjct: 660 VPTTLLAQQHFENFRDRFANFPIRVEVLSRFKSAKEQKEILAATAEGKVDILIGTHKLLQ 719

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           DSI++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 720 DSIKFDDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 779

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVV 504
           I   PA R  IKT +    + D+VI+  + +L E   G + Y +   ++       ++  
Sbjct: 780 IATPPARRLAIKTFV--REKADDVIK--EAILREIKRGGQVYVLHNNVD-----TIQNAA 830

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           E    L     + + + HG+M + + E +M  F +    +L+ TT+IE GIDV  A+ II
Sbjct: 831 EEIEKLIPE--ARVTLAHGQMRERELEKIMGDFYHQRFNVLVCTTIIETGIDVPTANTII 888

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFL 619
           ++ A+  GLAQLHQLRGRVGR    +   LL  HP  LSK++  RL  + + ED   GF 
Sbjct: 889 MDRADKLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKALSKDARKRLDAIASLEDLGAGFT 948

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 949 LATHDLEIRGAGELLGDGQSG 969


>gi|15598198|ref|NP_251692.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
           PAO1]
 gi|218890799|ref|YP_002439663.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
           LESB58]
 gi|9949103|gb|AAG06390.1|AE004725_3 transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
           PAO1]
 gi|218771022|emb|CAW26787.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
           LESB58]
          Length = 1148

 Score =  230 bits (586), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 142/381 (37%), Positives = 214/381 (56%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q+SAI+ ++ DM     M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 597 GFPFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVL 656

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A   +A G+  I+IGTH L Q
Sbjct: 657 VPTTLLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVENAARLLAEGKIDILIGTHKLLQ 716

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + +++  L LV++DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 717 EDVKFANLGLVVIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 776

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
           I   PA R  ++T +  + + + VI E L   L  G + Y++  +++  EK   +   +V
Sbjct: 777 IATPPARRLSVRTFV--MEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELV 834

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + I I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+
Sbjct: 835 PE---------ARIGIGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIL 885

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619
           IE A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + N +D   GF+
Sbjct: 886 IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFV 945

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 946 LATHDLEIRGAGELLGDGQSG 966


>gi|296388503|ref|ZP_06877978.1| transcription-repair coupling factor [Pseudomonas aeruginosa PAb1]
          Length = 1148

 Score =  230 bits (586), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 142/381 (37%), Positives = 214/381 (56%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q+SAI+ ++ DM     M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 597 GFPFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVL 656

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A   +A G+  I+IGTH L Q
Sbjct: 657 VPTTLLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVENAARLLAEGKIDILIGTHKLLQ 716

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + +++  L LV++DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 717 EDVKFANLGLVVIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 776

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
           I   PA R  ++T +  + + + VI E L   L  G + Y++  +++  EK   +   +V
Sbjct: 777 IATPPARRLSVRTFV--MEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELV 834

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + I I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+
Sbjct: 835 PE---------ARIGIGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIL 885

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619
           IE A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + N +D   GF+
Sbjct: 886 IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFV 945

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 946 LATHDLEIRGAGELLGDGQSG 966


>gi|116051004|ref|YP_790170.1| transcription-repair coupling factor [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|313108292|ref|ZP_07794324.1| transcription-repair coupling factor [Pseudomonas aeruginosa 39016]
 gi|115586225|gb|ABJ12240.1| transcription-repair coupling factor [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310880826|gb|EFQ39420.1| transcription-repair coupling factor [Pseudomonas aeruginosa 39016]
          Length = 1148

 Score =  230 bits (586), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 142/381 (37%), Positives = 214/381 (56%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q+SAI+ ++ DM     M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 597 GFPFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVL 656

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A   +A G+  I+IGTH L Q
Sbjct: 657 VPTTLLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVENAARLLAEGKIDILIGTHKLLQ 716

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + +++  L LV++DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 717 EDVKFANLGLVVIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 776

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
           I   PA R  ++T +  + + + VI E L   L  G + Y++  +++  EK   +   +V
Sbjct: 777 IATPPARRLSVRTFV--MEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELV 834

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + I I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+
Sbjct: 835 PE---------ARIGIGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIL 885

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619
           IE A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + N +D   GF+
Sbjct: 886 IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFV 945

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 946 LATHDLEIRGAGELLGDGQSG 966


>gi|107102552|ref|ZP_01366470.1| hypothetical protein PaerPA_01003616 [Pseudomonas aeruginosa PACS2]
          Length = 1148

 Score =  230 bits (586), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 142/381 (37%), Positives = 214/381 (56%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q+SAI+ ++ DM     M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 597 GFPFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVL 656

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A   +A G+  I+IGTH L Q
Sbjct: 657 VPTTLLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVENAARLLAEGKIDILIGTHKLLQ 716

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + +++  L LV++DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 717 EDVKFANLGLVVIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 776

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
           I   PA R  ++T +  + + + VI E L   L  G + Y++  +++  EK   +   +V
Sbjct: 777 IATPPARRLSVRTFV--MEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELV 834

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + I I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+
Sbjct: 835 PE---------ARIGIGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIL 885

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619
           IE A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + N +D   GF+
Sbjct: 886 IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFV 945

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 946 LATHDLEIRGAGELLGDGQSG 966


>gi|259501958|ref|ZP_05744860.1| transcription-repair coupling factor [Lactobacillus antri DSM 16041]
 gi|259170135|gb|EEW54630.1| transcription-repair coupling factor [Lactobacillus antri DSM 16041]
          Length = 1185

 Score =  230 bits (586), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 148/455 (32%), Positives = 245/455 (53%), Gaps = 23/455 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R   +  E +A ++  L  +++  K    P   +  +  +   N P++ T+ Q 
Sbjct: 578  EWAKTKRRVASKVEDIADELVDLYAKREAAKGYAFP--ADDYLQAQFDANFPYTETRDQL 635

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +IK++ +DM +   M R+L GDVG GKT VA+ A+  AV  G Q   + P  +LAQQH+
Sbjct: 636  RSIKEVKRDMEKPRPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTVLAQQHF 695

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + + K      + + +++        ++    +A G   I++GTH +    +Q+  L LV
Sbjct: 696  DTLSKRFAGFPVKIALMSRFKTNQELKETDAGLAAGSIDIVVGTHRILSKDVQFRDLGLV 755

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL +TATPIPRTL ++ LG  D+S +   PAGR PI
Sbjct: 756  IVDEEQRFGVKHKERLKELKNNVDVLTLTATPIPRTLNMSMLGVRDLSVLETPPAGRFPI 815

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            +T ++  N   I + I R    L+ G + Y++  ++     S+    V +  +L     +
Sbjct: 816  QTYVMEQNGGAIRDGITR---ELNRGGQVYYLHNRV-----SDIEETVMKLQALVPD--A 865

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             I  IHG+M + + E+V+  F  G   +L+ T++IE G+D+ + + + +ENA+H GLAQL
Sbjct: 866  RIGYIHGKMGENELETVLYDFIQGNYDVLVTTSIIETGVDIPNVNTLFVENADHLGLAQL 925

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
            +Q+RGR+GR   ++    +Y P   L++    RL+ +++ TE   GF IA  DL  R  G
Sbjct: 926  YQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLAIRGAG 985

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLE--IARKDAK 664
             ILG +Q G    +    +L+ S+L   +ARK  K
Sbjct: 986  NILGKQQHGFIDSV--GYDLYSSMLNEAVARKQGK 1018


>gi|125975114|ref|YP_001039024.1| transcription-repair coupling factor [Clostridium thermocellum ATCC
           27405]
 gi|125715339|gb|ABN53831.1| transcription-repair coupling factor [Clostridium thermocellum ATCC
           27405]
          Length = 1178

 Score =  230 bits (586), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 221/378 (58%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q   I++I +DM     M R+L GDVG GKT VA+ A+  AV  G Q   + P
Sbjct: 629 PYQETEDQLRCIEEIKRDMESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMDGKQVAYLVP 688

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHY   K+  ++  I VE+++    QA +++ L+ +  G   ++IGTH L Q  
Sbjct: 689 TTVLAQQHYNTFKERMKDFPITVEVLSRFRTQAEQKRILKDVKAGMVDVLIGTHRLLQKD 748

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+++DE+ RFGV  + K+ +  T   VL +TATPIPRTL ++ +G  DIS I 
Sbjct: 749 VCFKDLGLLVIDEEQRFGVTHKEKIKRMKTNIDVLTLTATPIPRTLHMSLVGIRDISTIE 808

Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           E P  R P++T ++  N  DEV+ + +   +S G + +++  ++        R++ ++  
Sbjct: 809 EPPEERYPVQTYVMEYN--DEVVRDAINREMSRGGQVFYLYNRV--------RAINQKAA 858

Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            + +    + +AI HG+M++ + E++M  F NG   +L+ TT+IE G+D+ + + II+E+
Sbjct: 859 EIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVED 918

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GLAQL+QLRGRVGR   ++   + Y     LS+ +  RL  +K  TE   GF IA 
Sbjct: 919 ADKMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAM 978

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +Q G
Sbjct: 979 RDLQLRGAGNLLGPQQHG 996


>gi|332851753|ref|ZP_08433678.1| transcription-repair coupling factor [Acinetobacter baumannii
           6013150]
 gi|332729760|gb|EGJ61095.1| transcription-repair coupling factor [Acinetobacter baumannii
           6013150]
          Length = 1153

 Score =  230 bits (586), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 148/430 (34%), Positives = 230/430 (53%), Gaps = 23/430 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T +       I E I R    L  G + Y++  ++E  E+   N R +V           
Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVETIERAAENIRVLVPE--------- 840

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQ
Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  
Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960

Query: 631 GEILGIKQSG 640
           GE+LG +QSG
Sbjct: 961 GELLGEQQSG 970


>gi|148245051|ref|YP_001219745.1| transcription-repair coupling factor [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326878|dbj|BAF62021.1| transcription-repair coupling factor [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 1145

 Score =  230 bits (586), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 140/382 (36%), Positives = 216/382 (56%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           N PF  T  Q   + ++L DM  +  M R++ GDVG GKT +A+ A   AV+AG Q  I+
Sbjct: 598 NFPFEETPDQIKTMNEVLADMQSQQPMDRLVCGDVGFGKTEIAMRAAFLAVKAGKQVAIL 657

Query: 328 APIGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P  +L+ QHY  FI ++T +   I  +     P+  ++  +E++  G   IIIGTH + 
Sbjct: 658 VPTTLLSNQHYRSFIDRFTNDPTKIATLSRFQTPK-EQKIIIEQLKQGTIDIIIGTHKII 716

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DI 445
           Q++I+Y  L L+I+DE+HRFGV+Q+  L +      +L MTATPIPRTL + +LG + ++
Sbjct: 717 QNNIKYKNLSLIIIDEEHRFGVKQKEALKKLRGQSDILTMTATPIPRTLNM-ALGSLREL 775

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503
           S I   PA R  I+T +   +  D + E +   +  G + + +   I   +    N + +
Sbjct: 776 SIIATPPAKRSTIQTFVQEWHN-DNIKEAITREIHRGGQVFILHNDINSIDNMAENLKQI 834

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           + +           I I HG++   + E +M  F +    +L+ TT+IE GID+ +A+ I
Sbjct: 835 IPKL---------QIRIAHGKIPTRELEQIMSDFYHARFHILVCTTIIETGIDIPNANTI 885

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618
           II NA++FGLAQLHQLRGRVGR    +   L+   H  LSK +  RL V+K+  +   GF
Sbjct: 886 IINNAQNFGLAQLHQLRGRVGRSHHRAYAYLIVKSHLSLSKTAKDRLDVIKSLTELGSGF 945

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
           ++A  DL+ R  G++LG  QSG
Sbjct: 946 MLANHDLEIRGAGDLLGDNQSG 967


>gi|322373973|ref|ZP_08048507.1| transcription-repair coupling factor [Streptococcus sp. C150]
 gi|321276939|gb|EFX54010.1| transcription-repair coupling factor [Streptococcus sp. C150]
          Length = 1168

 Score =  230 bits (586), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 215/382 (56%), Gaps = 19/382 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           +  ++ T  Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 609 DFAYAETVDQLRSIKEIKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAIL 668

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA QHY   K+  +N  + V+ ++    +  + + +E +A G+  IIIGTH L  
Sbjct: 669 VPTTVLAHQHYLNFKERFENHAVEVDELSRFRSKKEQNETIENLAKGRIDIIIGTHRLLS 728

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S 
Sbjct: 729 KDVEFSDLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSI 788

Query: 448 ITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E + R    +  G + ++I  ++E        ++ +
Sbjct: 789 IETAPTNRYPVQTYVMETNPGLIREAVLR---EMDRGGQVFYIYNRVE--------TIDQ 837

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           + + LHE    + I  +HG+MS+   E+ +  F NG   +L+ATT+IE GID+ + + + 
Sbjct: 838 KVSELHELVPEARIGFVHGQMSESMLENTLLDFLNGDYDVLVATTIIETGIDISNVNTLF 897

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619
           IENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   GF 
Sbjct: 898 IENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLDAIKGFTELGSGFK 957

Query: 620 IAEEDLKQRKEGEILGIKQSGM 641
           IA  DL  R  G ILG  QSG 
Sbjct: 958 IAMRDLSIRGAGNILGASQSGF 979


>gi|149195831|ref|ZP_01872888.1| Transcription-repair coupling factor, MFD (superfamily II helicase
           ) [Lentisphaera araneosa HTCC2155]
 gi|149141293|gb|EDM29689.1| Transcription-repair coupling factor, MFD (superfamily II helicase
           ) [Lentisphaera araneosa HTCC2155]
          Length = 1062

 Score =  230 bits (586), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 143/410 (34%), Positives = 230/410 (56%), Gaps = 19/410 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q SAI+++ +DM +   M R+L GDVG GKT VA+ A   AV +  Q  I+
Sbjct: 522 SFPYEETPDQLSAIEEVKKDMERAKPMDRLLCGDVGFGKTEVAMRAAFKAVMSSHQVAIV 581

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+    +   +  I +  ++  + +  +++ L+ +A G+  I++GTH L Q
Sbjct: 582 VPTTVLAQQHFHSFSQRMSDFPIKIATLSRFISKKDQKQVLKEMAEGEVDIVVGTHRLLQ 641

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I + KL L++VDE+ RFGV+ +  L +      +L M+ATPIPRTL L+  G  D S 
Sbjct: 642 KDINFQKLGLLVVDEEQRFGVESKEALKRMRVNVDILSMSATPIPRTLYLSMTGLRDFST 701

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIE-RLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
           I   P  RKP++T++   N  DE+IE  ++  L  G + Y++  +++  +    +     
Sbjct: 702 ILTAPHNRKPVRTIVTKEN--DEIIEVAIRRELERGGQVYYLHNRVKTIENVALK----- 754

Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              L   F  ++I I HG+M + + E VM+ F +G  ++L+ TT+IE G+D+ +A+ ++I
Sbjct: 755 ---LKRQFPEANILIGHGQMDEEELEMVMNEFTDGDGQILVCTTIIESGMDIRNANTMVI 811

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLI 620
           + A+ FGL+ L+QLRGRVGR    + C LL      +  N+  RLS L+       GF +
Sbjct: 812 DRADRFGLSSLYQLRGRVGRDHRQAYCYLLMPRDEAIMDNAKERLSALRKHTHPGAGFKL 871

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           A  DL+ R  G +LG +QSG         EL+  LL+ + +D K  + QD
Sbjct: 872 AMRDLEIRGAGNMLGSQQSG--HIAAVGFELYCQLLKKSVEDLKGSIHQD 919


>gi|313673697|ref|YP_004051808.1| transcription-repair coupling factor [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940453|gb|ADR19645.1| transcription-repair coupling factor [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 1098

 Score =  230 bits (586), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 150/448 (33%), Positives = 238/448 (53%), Gaps = 28/448 (6%)

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260
            +A   N + N R  K  E    + +++A D        LL +  + K ++G     +G 
Sbjct: 504 DVAVKLNSLQNTRWKKLKEQAQKSAKKVAID--------LLKLYAERKAKLGFSFKDDGT 555

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
             + I  +  +  T+ Q +AI+D++ DM  +  M R++ GDVG GKT VA+ A      +
Sbjct: 556 FMKIIEDSFEYDETEDQINAIRDVIADMESEKAMDRLICGDVGFGKTEVAIRAACKCCAS 615

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q  ++AP  IL +QH+E  K+   N    +E ++    +    + L ++A+G+  III
Sbjct: 616 GKQVALLAPTTILVKQHFETFKRRFSNLPFKIEYVSRFKSKKEINETLRKVANGEIDIII 675

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTH L  + + ++ L L+I+DE+ RFGV  + K+    +   VL M+ATPIPRTL  +  
Sbjct: 676 GTHRLLSNDVSFHDLGLLIIDEEQRFGVAHKEKIKNLKSNIDVLAMSATPIPRTLQFSLA 735

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI---CPQIEEKKE 497
           G  DIS I   P  R P+ T I  IN  ++V + +   L  G + Y++     +IEEK  
Sbjct: 736 GIRDISIIETPPEERLPVLTNI--INNEEDVKKAIIHELKRGGQVYYLYNDLSKIEEKAY 793

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S  +S++           + +AI HG+M     E  +D+F +G   +L+ +T+IE GID+
Sbjct: 794 S-IKSMLPE---------AEVAIAHGQMDPEKVEKTLDAFYDGKIDVLVCSTIIENGIDI 843

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE 615
            + + III+ A+ FGL+QL+QL+GRVGR      C L       LS  +  RL +++   
Sbjct: 844 PNVNTIIIDGADKFGLSQLYQLKGRVGRSRVRGYCYLYIRNFNVLSTIAKKRLKIIQQMS 903

Query: 616 D---GFLIAEEDLKQRKEGEILGIKQSG 640
           +   GF IA  DL+ R  GE+LG +QSG
Sbjct: 904 ELGSGFKIASYDLQLRGAGELLGAEQSG 931


>gi|322515787|ref|ZP_08068732.1| exopolyphosphatase [Streptococcus vestibularis ATCC 49124]
 gi|322125749|gb|EFX97067.1| exopolyphosphatase [Streptococcus vestibularis ATCC 49124]
          Length = 1195

 Score =  230 bits (586), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 143/379 (37%), Positives = 215/379 (56%), Gaps = 19/379 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           ++ T  Q  +IK++  DM     M R+L GDVG GKT VA+ A   AV  G Q  I+ P 
Sbjct: 612 YAETVDQLRSIKEVKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPT 671

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QHY   K+  +N  + V+ ++    +  + + +E +A G+  IIIGTH L    +
Sbjct: 672 TVLAHQHYLNFKERFENHAVEVDELSRFRSKKEQNETIENLAKGRIDIIIGTHRLLSKDV 731

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S I  
Sbjct: 732 KFSDLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSIIET 791

Query: 451 KPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R P++T ++  N   I E I R    +  G + ++I  ++E        ++ ++ +
Sbjct: 792 APTNRYPVQTYVMETNPGLIREAILR---EMDRGGQIFYIYNRVE--------TIDQKVS 840

Query: 509 SLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            LHE    + I  +HG+MS++  E+ +  F NG   +L+ATT+IE GID+ + + + IEN
Sbjct: 841 ELHEIVPEARIGFVHGQMSEVMLENTLLDFLNGDYDVLVATTIIETGIDISNVNTLFIEN 900

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+H GL+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   GF IA 
Sbjct: 901 ADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLDAIKGFTELGSGFKIAM 960

Query: 623 EDLKQRKEGEILGIKQSGM 641
            DL  R  G ILG  QSG 
Sbjct: 961 RDLSIRGAGNILGSSQSGF 979


>gi|184157970|ref|YP_001846309.1| transcription-repair coupling factor [Acinetobacter baumannii
           ACICU]
 gi|332874430|ref|ZP_08442333.1| transcription-repair coupling factor [Acinetobacter baumannii
           6014059]
 gi|183209564|gb|ACC56962.1| Transcription-repair coupling factor (superfamily II helicase)
           [Acinetobacter baumannii ACICU]
 gi|322508289|gb|ADX03743.1| Transcription-repair coupling protein [Acinetobacter baumannii
           1656-2]
 gi|332737274|gb|EGJ68198.1| transcription-repair coupling factor [Acinetobacter baumannii
           6014059]
          Length = 1153

 Score =  230 bits (586), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 148/430 (34%), Positives = 230/430 (53%), Gaps = 23/430 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T +       I E I R    L  G + Y++  ++E  E+   N R +V           
Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVETIERAAENIRVLVPE--------- 840

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQ
Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  
Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960

Query: 631 GEILGIKQSG 640
           GE+LG +QSG
Sbjct: 961 GELLGEQQSG 970


>gi|17232707|ref|NP_489255.1| transcriptional-repair coupling factor [Nostoc sp. PCC 7120]
 gi|17134354|dbj|BAB76914.1| transcriptional-repair coupling factor [Nostoc sp. PCC 7120]
          Length = 1185

 Score =  230 bits (586), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 137/381 (35%), Positives = 216/381 (56%), Gaps = 19/381 (4%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  A++D+ +DM     M R++ GDVG GKT VA+ A+  AV +G Q  ++
Sbjct: 631  SFPYQATTDQLKAVQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTSGKQVALL 690

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            AP  IL QQHY  +K+      + V ++        RR   +R+A G+  I++GTH L  
Sbjct: 691  APTTILTQQHYHTLKERFSPYPVNVGLLNRFRTAEERRNIQKRLATGELDIVVGTHQLLG 750

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             S+ +  L L+++DE+ RFGV Q+ K+    T   VL ++ATPIPRTL ++  G  ++S 
Sbjct: 751  KSVSFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSL 810

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
            IT  P  R+PIKT + P N  + V   ++  L  G + +++ P+++  E+  +N R +V 
Sbjct: 811  ITTPPPTRRPIKTHLSPRN-PESVRSAIRQELDRGGQVFYVVPRVDGIEEITANLREMVP 869

Query: 506  RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                      +  AI HG+M + + ES M +F NG   +L+ TT+IE G+D+   + I+I
Sbjct: 870  ---------GARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILI 920

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLK---NTEDGFL 619
            E+A  FGL+QL+QLRGRVGR   I +   L++P    LS  +  RL  ++       G+ 
Sbjct: 921  EDAHRFGLSQLYQLRGRVGRA-GIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGSGYQ 979

Query: 620  IAEEDLKQRKEGEILGIKQSG 640
            +A  D++ R  G +LG +QSG
Sbjct: 980  LAMRDMEIRGVGNLLGAEQSG 1000


>gi|260655930|ref|ZP_05861399.1| putative transcription-repair coupling factor [Jonquetella anthropi
           E3_33 E1]
 gi|260629546|gb|EEX47740.1| putative transcription-repair coupling factor [Jonquetella anthropi
           E3_33 E1]
          Length = 1023

 Score =  229 bits (585), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 143/390 (36%), Positives = 220/390 (56%), Gaps = 18/390 (4%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G++     ++ P+  T+ Q  AI++I  DM +   M R+L GDVG GKT VAL A   AV
Sbjct: 482 GEMRSLFDQSFPYRETRDQLKAIREIDSDMERPFPMDRLLVGDVGYGKTEVALRAAVKAV 541

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           E G QA  +AP  +LAQQHY        +  I   +++  +  A ++K    +A G   +
Sbjct: 542 ENGLQAAFVAPTTVLAQQHYRTCLARIGDLPIRTALLSRMVTPAGQKKIRTGLAEGTIDL 601

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
           ++GTH+LF+ ++++  L L+I+DE+HRFGV  +  L  KAT P   VL ++ATPIPR+L 
Sbjct: 602 VVGTHSLFRTALEFKNLGLLILDEEHRFGVAHKESL--KATHPGVDVLSLSATPIPRSLS 659

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +   G  DIS +T  PA R  I TV  P +    V + L   L  G + Y++  +IE+ +
Sbjct: 660 MAWRGIKDISLLTTPPASRGRIYTVTGPWSE-SLVSDALARELQRGGQVYYLHNRIEDIQ 718

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           +  +R V +RF        + +A+ HG+M+  + E VM+ F  G  ++LI TT++E G+D
Sbjct: 719 QVAWR-VSQRFPD------APLAVAHGQMNQRELEDVMERFYRGAVQILICTTIVESGLD 771

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY---HPPLSKNSYTRLSVLKN 613
           V  A+ +++++    GLAQ+HQ+RGR+GR +E      LY      L   ++ RL  L  
Sbjct: 772 VARANTLVVDDVRWLGLAQMHQIRGRIGRRQEDGYAYFLYPGDDASLPGQTWERLEALGA 831

Query: 614 TED---GFLIAEEDLKQRKEGEILGIKQSG 640
            E    G+ +A+ DL+ R  GEILG  Q G
Sbjct: 832 MESSGGGYRLAQRDLEIRGAGEILGTSQHG 861


>gi|257457388|ref|ZP_05622559.1| transcription-repair coupling factor [Treponema vincentii ATCC
           35580]
 gi|257445310|gb|EEV20382.1| transcription-repair coupling factor [Treponema vincentii ATCC
           35580]
          Length = 1154

 Score =  229 bits (585), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 137/376 (36%), Positives = 226/376 (60%), Gaps = 13/376 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q + I D+  DM +   M R++ GDVG GKT +A+ A   AV  G QA  +AP
Sbjct: 612 PYEETEDQLTCIADVKTDMEKPVPMDRLICGDVGYGKTEIAMRAAFKAVMNGKQAAFLAP 671

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+E  ++  Q   + +  ++  + +A ++K L+++ +G+  I+IGTH + Q  
Sbjct: 672 TTILAEQHFETFQERFQKFPVKLARLSRFVSKAEQKKVLDQLKNGELDIVIGTHRVIQKD 731

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +Q+  L L+IVDE+ RFGV+ + +L Q  T    L ++ATPIPRTL ++ L   D+S +T
Sbjct: 732 VQFKDLGLMIVDEEQRFGVKDKERLKQMKTNIDCLSLSATPIPRTLHISLLKIRDMSLLT 791

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R+P++TVI P +  +++ + ++  +  G + +++  ++E  +E+ +     +   
Sbjct: 792 TPPQNRRPVETVISPFDP-EKIAQAIRFEVDRGGQVFYLHNRVESLEETRY-----KIQQ 845

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L       IA  HG+MS  + E +   F  G   +LIATT+IE GID+ +A+ III+ A+
Sbjct: 846 LIPEVLIDIA--HGQMSATELEDIFRRFNMGGFHVLIATTIIENGIDIPNANTIIIDRAD 903

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEED 624
            +G++QL+QLRGRVGR +  +   LLY  +  LS+ +  RL V+ + TE   GF IA +D
Sbjct: 904 MYGVSQLYQLRGRVGRSDRKAYAYLLYPENKALSEVAMKRLQVISDFTELGSGFKIAMKD 963

Query: 625 LKQRKEGEILGIKQSG 640
           ++ R  G +LG +QSG
Sbjct: 964 MEIRGAGNLLGKEQSG 979


>gi|84386598|ref|ZP_00989624.1| transcription-repair coupling factor [Vibrio splendidus 12B01]
 gi|84378404|gb|EAP95261.1| transcription-repair coupling factor [Vibrio splendidus 12B01]
          Length = 1153

 Score =  229 bits (585), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 135/382 (35%), Positives = 211/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  ++ DM Q   M R++ GDVG GKT VA+ A     +   Q  ++
Sbjct: 599 GFPFEETDDQAMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVCTDNSKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  ++ +  G+  I++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANQPIRVEVLSRFKSAKEQKLIMQDVTDGKVDILVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L L++VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 SDLKFKDLGLLVVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  IKT    +   D+ I R  V+  +  G + Y++  Q++  EK   + + +
Sbjct: 779 IATPPARRLAIKTF---VRESDDAIVREAVLREIMRGGQVYFLHNQVDTIEKTAESLQKL 835

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +           + + + HG+M + + E +M+ F +    LL+ TT+IE GIDV  A+ I
Sbjct: 836 IPE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTI 886

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618
           +++ A++ GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   GF
Sbjct: 887 LMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAMTKDAVKRLDAIASLEDLGAGF 946

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 947 TLATHDLEIRGAGELLGDEQSG 968


>gi|260555151|ref|ZP_05827372.1| transcription-repair coupling factor [Acinetobacter baumannii ATCC
           19606]
 gi|260411693|gb|EEX04990.1| transcription-repair coupling factor [Acinetobacter baumannii ATCC
           19606]
          Length = 1153

 Score =  229 bits (585), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 148/430 (34%), Positives = 230/430 (53%), Gaps = 23/430 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T +       I E I R    L  G + Y++  ++E  E+   N R +V           
Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVETIERAAENIRVLVPE--------- 840

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQ
Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  
Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960

Query: 631 GEILGIKQSG 640
           GE+LG +QSG
Sbjct: 961 GELLGEQQSG 970


>gi|323517915|gb|ADX92296.1| transcription-repair coupling factor [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 1153

 Score =  229 bits (585), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 148/430 (34%), Positives = 230/430 (53%), Gaps = 23/430 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T +       I E I R    L  G + Y++  ++E  E+   N R +V           
Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVETIERAAENIRVLVPE--------- 840

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQ
Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  
Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960

Query: 631 GEILGIKQSG 640
           GE+LG +QSG
Sbjct: 961 GELLGEQQSG 970


>gi|239502151|ref|ZP_04661461.1| transcription-repair coupling factor [Acinetobacter baumannii
           AB900]
          Length = 1153

 Score =  229 bits (585), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 148/430 (34%), Positives = 230/430 (53%), Gaps = 23/430 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T +       I E I R    L  G + Y++  ++E  E+   N R +V           
Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVETIERAAENIRVLVPE--------- 840

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQ
Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  
Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960

Query: 631 GEILGIKQSG 640
           GE+LG +QSG
Sbjct: 961 GELLGEQQSG 970


>gi|169633480|ref|YP_001707216.1| transcription-repair coupling protein [Acinetobacter baumannii SDF]
 gi|169152272|emb|CAP01180.1| transcription-repair coupling protein [Acinetobacter baumannii]
          Length = 1153

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 148/430 (34%), Positives = 230/430 (53%), Gaps = 23/430 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T +       I E I R    L  G + Y++  ++E  E+   N R +V           
Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVETIERAAENIRVLVPE--------- 840

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQ
Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  
Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960

Query: 631 GEILGIKQSG 640
           GE+LG +QSG
Sbjct: 961 GELLGEQQSG 970


>gi|320334953|ref|YP_004171664.1| transcription factor CarD [Deinococcus maricopensis DSM 21211]
 gi|319756242|gb|ADV67999.1| transcription factor CarD [Deinococcus maricopensis DSM 21211]
          Length = 1042

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 144/407 (35%), Positives = 219/407 (53%), Gaps = 41/407 (10%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+I  N PF  T  Q +A+K+  +D+   + M R++ GDVG GKT VAL A    V  G 
Sbjct: 476 QQIEENFPFELTADQVTALKETYRDLEADHPMDRLIAGDVGFGKTEVALRAAHRVVGHGK 535

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  +LA+QH     +  +N  + VE I+           L  +A G+  +IIGT
Sbjct: 536 QVAILVPTTLLAEQHTSTFVERFKNLPVRVEGISRFTSTRQANAILADLAQGKVDVIIGT 595

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLK----------------------LTQKATA 420
           H L  D IQ+  L L+IVDE+HRFGV Q+ K                      L + A A
Sbjct: 596 HRLLSDDIQFKNLGLIIVDEEHRFGVNQKEKLKALQNLPELDKNGAPKKGKRALPEDAVA 655

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-- 478
             VL ++ATPIPRTL ++ +G  D+S I   P GRKPI+TV+ P    D +  R  +V  
Sbjct: 656 VDVLSLSATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTVLAP---FDPMTVRNAIVSE 712

Query: 479 LSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           +    K ++I  ++     +    R++V           + + + HG+M++ + E +M  
Sbjct: 713 IDRNGKVFYIHDRVASIGARSLYLRTLVPE---------ARVGVAHGQMNEEELEEIMLG 763

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G   +L+ATT++E G+D+ +A+ I+IE ++  GLAQL+QLRGRVGR    +   L Y
Sbjct: 764 FEEGAFDVLLATTIVETGLDIPEANTILIERSDRLGLAQLYQLRGRVGRRSVDAYAYLFY 823

Query: 597 HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            P L++N+  RL  + + +D   G  +AE+D++ R  G ILG +Q G
Sbjct: 824 PPRLTENASRRLWAIADLQDLGTGHKLAEKDMEIRGVGNILGEEQHG 870


>gi|167041981|gb|ABZ06718.1| putative TRCF domain protein [uncultured marine microorganism
           HF4000_141E02]
          Length = 1150

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 149/377 (39%), Positives = 206/377 (54%), Gaps = 23/377 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q   I+D+L DM+    M R++ GDVG GKT VAL A       G Q  ++ P  IL
Sbjct: 608 TQDQAKVIEDVLDDMAASKSMDRLVCGDVGFGKTEVALRAAFTCAINGYQVALLVPTTIL 667

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQH+E   +      I + I++      +  +    I  G+A IIIGTHAL  D + Y 
Sbjct: 668 AQQHFETFNERFSEWPIAINILSRLQTSKNNNQVRAGIEKGKADIIIGTHALLSDKVVYK 727

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DISKITEKP 452
            L LVIVDE+HRFGV+ + KL         L +TATPIPRTL + ++G++ DIS I   P
Sbjct: 728 NLGLVIVDEEHRFGVRHKEKLKALRKDVDYLALTATPIPRTLNM-AIGELKDISMIATPP 786

Query: 453 AGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
            GR P+KT I   ++  I E  +R    +S G +  ++  +I+  E      R ++    
Sbjct: 787 EGRIPVKTYISQWDKSLIHEACQR---EISRGGQVLFVHNRIDDIENMAETIRQIIP--- 840

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   S+ I HGRM +   E VM  F N    +L+AT++IE G+D+ +A+ III  A
Sbjct: 841 ------VGSLEIAHGRMKERSLERVMMKFYNNEFDILLATSIIESGLDIPNANTIIINRA 894

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLAQLHQLRGRVGR E  S   L+      L+     RL  ++  ED   GF++A  
Sbjct: 895 DRFGLAQLHQLRGRVGRSERQSYAYLMIPSKHTLTNEGRQRLEAIEAIEDLGVGFILATH 954

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  GEILG +QSG
Sbjct: 955 DLEIRGAGEILGDEQSG 971


>gi|116333178|ref|YP_794705.1| transcription-repair coupling factor [Lactobacillus brevis ATCC
           367]
 gi|116098525|gb|ABJ63674.1| Transcription-repair coupling factor (superfamily II helicase)
           [Lactobacillus brevis ATCC 367]
          Length = 1180

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 145/429 (33%), Positives = 229/429 (53%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW     +  A  E +A ++  L  ++  +K    P  V+  +      + P++ T  Q 
Sbjct: 568 EWAKTKSKVAAKIEDIADELVDLYAKRSAEKGYAFP--VDDSLQHDFENDFPYAETPDQL 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             I+++  DM +   M R+L GDVG GKT VAL A   AVEAG Q   + P  ILAQQHY
Sbjct: 626 RTIEEVKHDMEKPRPMDRLLVGDVGYGKTEVALRAAFKAVEAGKQVAFLVPTTILAQQHY 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +    +   I VE+ +         +A++ +  GQ  I++GTH L    +++  L LV
Sbjct: 686 DTMVSRFEGYPINVEMFSRFRTTKQIHQAIKDLETGQLDIVVGTHRLLSQDVKFKNLGLV 745

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 746 LVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPI 805

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
           +T ++  N    + + ++  +  G + +++  +++  EK     + +V           +
Sbjct: 806 QTYVMEQN-AGAIQDGIRREMQRGGQVFYLHNRVDDIEKTVGQIQVLVPE---------A 855

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +  IHG+M++   E V+  F  G   +L+ TT+IE GID+ +A+ + +ENA+  GL+QL
Sbjct: 856 RVGYIHGKMTEAQLEGVLFDFLRGDYDVLVTTTIIETGIDIPNANTLFVENADRMGLSQL 915

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++     Y P   L++ S  RL  +K+ TE   GF IA  DL  R  G
Sbjct: 916 YQLRGRIGRSNRVAYAYFTYQPNKVLTEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAG 975

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 976 NLLGKQQHG 984


>gi|149926139|ref|ZP_01914401.1| Transcription-repair coupling factor [Limnobacter sp. MED105]
 gi|149824957|gb|EDM84169.1| Transcription-repair coupling factor [Limnobacter sp. MED105]
          Length = 1188

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 159/423 (37%), Positives = 235/423 (55%), Gaps = 21/423 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q +AI+ ++ DM+    M R++ GDVG GKT VAL A   +V  G Q V++AP 
Sbjct: 645  FEETADQAAAIRAVIADMTSPRPMDRLVCGDVGFGKTEVALRAAFVSVMDGKQVVLLAPT 704

Query: 331  GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH++ F  +++     +VE+     P+   R A+E I  G+A IIIGTH +    
Sbjct: 705  TLLAEQHFQTFSDRFSDWPVKVVELSRFKSPK-EIRDAVELINSGRADIIIGTHKVLSSE 763

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +++ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I 
Sbjct: 764  VEFSRLGLVIIDEEHRFGVRQKEALKNLRAEVDVLTLTATPIPRTLAMSMEGIRDFSVIA 823

Query: 450  EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R  IKT +      D VI E +   L  G + Y++  +++  +  N R  +E+  
Sbjct: 824  TAPQRRLSIKTFV--RRETDSVIREAVLRELKRGGQVYYLHNEVDTIE--NRREALEKI- 878

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
             L E   + I I HG+M++ D E VM  F      +L+ TT+IE GIDV  A+ I+I  A
Sbjct: 879  -LPE---ARIGIAHGQMNERDLERVMRDFYQQRFNVLLCTTIIETGIDVPTANTIVIHRA 934

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEE 623
            + FGLAQLHQLRGRVGR    +   ++ +    LSKN+  RL  +   ED   GF +A  
Sbjct: 935  DKFGLAQLHQLRGRVGRSHHQAYAYMMVNNEEGLSKNAERRLEAITMMEDLGSGFYLAMH 994

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            DL+ R  GE+LG  QSG    +  Q  ++  +L  A +  +    ++PDLT+    ++ I
Sbjct: 995  DLEIRGAGEVLGANQSGNVHEVGFQ--MYTDMLNHAVRSLR--AGKEPDLTAPLNATVEI 1050

Query: 684  LLY 686
             L+
Sbjct: 1051 NLH 1053


>gi|34763024|ref|ZP_00144000.1| Transcription-repair coupling factor [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887325|gb|EAA24419.1| Transcription-repair coupling factor [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 805

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 225/375 (60%), Gaps = 13/375 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF+ T +Q  AI+D+ +DM     M R++ GDVG GKT VA+ A   AV  G Q +++ P
Sbjct: 276 PFTETPAQLKAIEDVKRDMESGKIMDRLICGDVGYGKTEVAIRATFKAVMDGKQVILLVP 335

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHYE   +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D 
Sbjct: 336 TTVLAEQHYERFSERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDD 395

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  + L+I+DE+ +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I 
Sbjct: 396 IKFKDVGLLIIDEEQKFGVKAKEKLKKIKGDLDVLTLTATPIPRTLNLSLLGIRDLSVID 455

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P GR+ I+T  I  N+  I ++I  L  +  EG + ++I   + ++ ES  + + E  
Sbjct: 456 TSPEGRQKIQTEYIDNNKNLIKDII--LSEISREG-QVFYIFNSV-KRIESKVKEIRE-- 509

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L E+    ++ IHG+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +IIE 
Sbjct: 510 -LLPEYI--KVSYIHGQMLPRDIKKNIQEFENGNVDVLVATTIIENGIDIENANTMIIEG 566

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDL 625
            E  GL+Q++QLRGR+GR  + S C +L +   +KN+  R   ++  ++  G  +A ED 
Sbjct: 567 VEKLGLSQVYQLRGRIGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGIDLAMEDS 626

Query: 626 KQRKEGEILGIKQSG 640
           K R  GEILG KQ G
Sbjct: 627 KIRGVGEILGEKQHG 641


>gi|225575737|ref|ZP_03784347.1| hypothetical protein RUMHYD_03830 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037050|gb|EEG47296.1| hypothetical protein RUMHYD_03830 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1044

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 141/413 (34%), Positives = 227/413 (54%), Gaps = 15/413 (3%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T+ Q  AI+D  +DM     M R++ GDVG GKT +AL A   A++ G Q V + 
Sbjct: 491 FPYEETEDQIQAIEDTKRDMESTKIMDRLICGDVGYGKTEIALRAAFKAIQEGKQVVYLV 550

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILAQQHY    +  +   + VE++      A +RK LE +  G   ++IGTH +   
Sbjct: 551 PTTILAQQHYNTFVQRMKEFPVRVELLCRFRTPAEQRKTLEGLKKGWVDVVIGTHRVLSK 610

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++Y  L L+I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ +G  D+S +
Sbjct: 611 DVEYKDLGLLIIDEEQRFGVTHKEKIKKLKNNVDVLTLTATPIPRTLHMSLIGIRDMSVL 670

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            E P  R PI+T ++  +  + V E ++  L  G + Y++  ++ +  E     V  R +
Sbjct: 671 EEPPMDRMPIQTYVMEYDE-ETVREAVQRELKRGGQVYYVYNRVNDIAE-----VASRLS 724

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L       +   HG+MS+ + E VM  F NG   +L++TT+IE G+D+ + + +II ++
Sbjct: 725 QLLPDV--QVGFAHGQMSERELEKVMYEFINGELDVLVSTTIIETGLDISNVNTMIIHDS 782

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
           + +GL+QL+QLRGR+GR    +   L+Y  +  L + +  RLS ++   D   GF IA  
Sbjct: 783 DRYGLSQLYQLRGRIGRSNRTAYAFLMYRKNSILKETAEKRLSAIREFTDLGSGFKIAMR 842

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           DL+ R  G +LG +Q G  +      +L+  +L  A K+AK I   +   T++
Sbjct: 843 DLELRGAGNLLGAQQHGHMQ--AVGYDLYCKMLNEAVKEAKGITVMEDFETTI 893


>gi|292487974|ref|YP_003530851.1| transcription-repair-coupling factor [Erwinia amylovora CFBP1430]
 gi|292899191|ref|YP_003538560.1| transcription-repair coupling factor (TrcF) [Erwinia amylovora ATCC
           49946]
 gi|291199039|emb|CBJ46150.1| transcription-repair coupling factor (TrcF) [Erwinia amylovora ATCC
           49946]
 gi|291553398|emb|CBA20443.1| Transcription-repair-coupling factor [Erwinia amylovora CFBP1430]
          Length = 1148

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 148/409 (36%), Positives = 220/409 (53%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q    + PF  T  Q  AI  +L DM Q   M R++ 
Sbjct: 568 LLDIYAQRAAKTGFAFKHDKQQYQLFCESFPFETTVDQAQAINAVLSDMCQPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+  +    N  + +E+++   
Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMMSRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + + L     G+  I+IGTH L Q+ I+   L L+IVDE+HRFGV+ + ++     
Sbjct: 688 TAKEQAQVLADAQEGKVDILIGTHKLLQNDIKLRDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D++  R + +L
Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDDLAVR-EAIL 803

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N     +R + L     + +A+ HG+M + + E VM+ 
Sbjct: 804 REVLRGGQVYYLYNDVE-----NIEKATQRLSELVPE--ARVALGHGQMRERELERVMND 856

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL 
Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAWLLT 916

Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            HP  ++ +++ RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 917 PHPKAMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEGQSG 965


>gi|297566385|ref|YP_003685357.1| transcription factor CarD [Meiothermus silvanus DSM 9946]
 gi|296850834|gb|ADH63849.1| transcription factor CarD [Meiothermus silvanus DSM 9946]
          Length = 988

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/432 (33%), Positives = 234/432 (54%), Gaps = 27/432 (6%)

Query: 219 EWTSPARERLAYD--ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
           EW   ARE+   D  EL A  + L   R+        PI     + +K   N P++ T  
Sbjct: 403 EWKK-AREKAQKDAEELAARMLVLHAKRQATPGRAWAPIPEWDSLIEK---NFPYALTPD 458

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           QE +++D  +D+     M R++ GDVG GKT VAL A    V  G Q  ++ P  +LA+Q
Sbjct: 459 QEKSLEDTFRDLEAPRPMDRLISGDVGFGKTEVALRAAHRVVGHGAQVALLVPTTLLAEQ 518

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H +  K   +   + VE ++    +   ++ L  +  G   I+IGTH L    +++  L 
Sbjct: 519 HTQTFKSRFEGLPVRVEGLSRFTSELDEQRILRDLEAGAVDIVIGTHRLLSGDLRFKDLG 578

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+I+DE+HRFGV Q+ ++ + A     L ++ATPIPRTL    +G  D+S I   P GRK
Sbjct: 579 LLIIDEEHRFGVAQKERIREIAETVDTLYLSATPIPRTLYSALVGLKDLSSIQTPPPGRK 638

Query: 457 PIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLH 511
           PI+TV+ P    D  + R + +LSE   G K +++  ++   + ++    ++        
Sbjct: 639 PIQTVLAP---YDPSLVR-EAILSEMERGGKVFYVHDRVATIQARQRYLENIAPE----- 689

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               + I ++HG+M + D E VM +F  G   +L+ATT+IE G+D+ +A+ I+IE A+  
Sbjct: 690 ----ARIGVVHGQMPEGDIEEVMLAFAEGAFDVLLATTIIESGLDIPEANTIVIERADRL 745

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           GLA L+QLRGRVGR ++ +     + P L++ +  RLS + +  D   G L+AE+D++ R
Sbjct: 746 GLAALYQLRGRVGRRDQEAYAYFFHPPRLTEAAERRLSAIADLSDLGSGHLLAEKDMEIR 805

Query: 629 KEGEILGIKQSG 640
             G +LG +Q G
Sbjct: 806 GVGNLLGPEQHG 817


>gi|254491679|ref|ZP_05104858.1| transcription-repair coupling factor [Methylophaga thiooxidans
           DMS010]
 gi|224463157|gb|EEF79427.1| transcription-repair coupling factor [Methylophaga thiooxydans
           DMS010]
          Length = 1101

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 156/445 (35%), Positives = 246/445 (55%), Gaps = 29/445 (6%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P+   G+         PF PT  Q+ AI  + +DM  ++ M R++ GDVG GKT VA+ A
Sbjct: 538 PMATPGEDYAAFAAAFPFEPTPDQQDAIDAVTKDMLSEHPMDRLVCGDVGFGKTEVAMRA 597

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER--- 370
              AV +G Q +++ P  +LAQQHYE  K    +  + VE+++    +   +K L+R   
Sbjct: 598 AFLAVHSGKQVLVLVPTTLLAQQHYENFKDRFADWPVRVEVLS----RFRSKKELDRVKS 653

Query: 371 -IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            I+ GQA IIIGTH L Q  I+  +L L ++DE+HRFGV Q+ ++ +  +   VL +TAT
Sbjct: 654 GISEGQADIIIGTHKLLQQDIEPKRLGLFVLDEEHRFGVTQKEQIKKYRSQIDVLTLTAT 713

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL ++  G  D+S I   PA R  IKT ++     +++ E +   +  G + Y++ 
Sbjct: 714 PIPRTLNMSISGIRDLSIIATAPARRLAIKTFVMQWE-AEKIREGMLREIKRGGQVYFLH 772

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            ++E+         +ER     E     + +A+ HG+M + + E VM  F +    +L+ 
Sbjct: 773 NKVED---------IERVAREIEAIMPEAKVAVAHGQMRERELEQVMLDFYHQRFNVLVC 823

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605
           TT+IE GIDV  A+ I I+ A+  GLAQL+Q+RGRVGR    +   L+  P   ++K++ 
Sbjct: 824 TTIIETGIDVPSANTIFIDRADKLGLAQLYQIRGRVGRSHHRAYAYLITPPQKVMTKDAV 883

Query: 606 TRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            RL  +++ ED   GF +A  D++ R  GE+LG +QSG    +     L++ LLE A K 
Sbjct: 884 KRLEAIESIEDLGAGFTLATHDMEIRGAGELLGDEQSGQMHEIGFN--LYNELLERAVKA 941

Query: 663 AKHILTQDPDLTSVRGQSIRILLYL 687
            K    ++P LT+     + I L++
Sbjct: 942 MKS--GKEPSLTNQDRHFVEIDLHV 964


>gi|148980820|ref|ZP_01816230.1| transcription-repair coupling factor [Vibrionales bacterium SWAT-3]
 gi|145961055|gb|EDK26376.1| transcription-repair coupling factor [Vibrionales bacterium SWAT-3]
          Length = 1153

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 137/382 (35%), Positives = 213/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  ++ DM Q   M R++ GDVG GKT VA+ A     +   Q  ++
Sbjct: 599 GFPFEETDDQAMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVCTDNSKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  ++ +A G+  I++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKAIMQDVADGKVDILVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 SDIKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  IKT    + + D+ + R  V+  +  G + Y++  Q++  EK   + + +
Sbjct: 779 IATPPARRLAIKTF---VRQSDDAVVREAVLREIMRGGQVYFLHNQVDTIEKTAESLQKL 835

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +           + + + HG+M + + E +M+ F +    LL+ TT+IE GIDV  A+ I
Sbjct: 836 IPE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTI 886

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618
           +++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF
Sbjct: 887 LMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGF 946

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 947 TLATHDLEIRGAGELLGDEQSG 968


>gi|94984652|ref|YP_604016.1| transcription factor CarD [Deinococcus geothermalis DSM 11300]
 gi|94554933|gb|ABF44847.1| transcription factor CarD [Deinococcus geothermalis DSM 11300]
          Length = 1041

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 140/397 (35%), Positives = 224/397 (56%), Gaps = 28/397 (7%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           ++ RN  F  T  Q++A+K+ ++D+   +   R++ GDVG GKT VAL A    V  G Q
Sbjct: 481 QVERNFKFELTADQKTALKETMRDLEAPHPADRLISGDVGFGKTEVALRAAHRVVGHGKQ 540

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             ++ P  +LA+QH     +  ++  + VE ++        +  L  +A G+  IIIGTH
Sbjct: 541 VAMLVPTTLLAEQHTSTFVERFKDLPVRVEGLSRFTGDKQAKAILADLAAGKVDIIIGTH 600

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQ-----------------RLKLTQKATAPHVLLM 426
            L    +Q+  L L+IVDE+HRFGV Q                 +L+L +   A   L +
Sbjct: 601 RLLSSDVQFKDLGLIIVDEEHRFGVGQKEKLRALRGLPDVPKDGKLELPEGVKAVDTLAL 660

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL ++ +G  D+S I   P GRKPI+TV+ P + +  V + +   +  G K +
Sbjct: 661 SATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTVLAPFDPV-TVRDAILNEIERGGKVF 719

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +I  +I        RS+  R N + E   + I + HGRM++ + E +M  F+ G   +L+
Sbjct: 720 YIHDRI---ASIGARSLYLR-NLVPE---ARIGVAHGRMNEEELEEIMLGFEQGAFDVLL 772

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TT++E G+D+ +A+ I+IE A+  GLAQL+QLRGRVGR ++ +   L Y P +++N+  
Sbjct: 773 STTIVETGLDIPEANTILIERADRLGLAQLYQLRGRVGRRQQTAYAYLFYPPRMTENAQR 832

Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           RL  + + +D   G L+AE+D++ R  G ILG +Q G
Sbjct: 833 RLWAIADLQDLGSGHLLAEKDMEIRGVGNILGEEQHG 869


>gi|325122057|gb|ADY81580.1| transcription-repair coupling protein [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 1153

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 148/430 (34%), Positives = 229/430 (53%), Gaps = 23/430 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    V+  +  +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFGFEVDQSLYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K +E +A G+  I++GTH L Q+++Q+  L L++
Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHTKNIEDLAEGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T +       I E I R    L  G + Y++  +++  E+   N R +V           
Sbjct: 793 TFVQEHTEASIKEAILR---ELLRGGQVYFLHNEVDTIERAAENIRVLVPE--------- 840

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQ
Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  
Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960

Query: 631 GEILGIKQSG 640
           GE+LG +QSG
Sbjct: 961 GELLGEQQSG 970


>gi|312172099|emb|CBX80356.1| Transcription-repair-coupling factor [Erwinia amylovora ATCC
           BAA-2158]
          Length = 1148

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 148/409 (36%), Positives = 220/409 (53%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q    + PF  T  Q  AI  +L DM Q   M R++ 
Sbjct: 568 LLDIYAQRAAKTGFAFKHDKQQYQLFCESFPFETTVDQAQAINAVLSDMCQPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+  +    N  + +E+++   
Sbjct: 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMMSRFR 687

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + + L     G+  I+IGTH L Q+ I+   L L+IVDE+HRFGV+ + ++     
Sbjct: 688 TAKEQAQVLADAQEGKVDILIGTHKLLQNDIKLRDLGLLIVDEEHRFGVRHKERIKAMRA 747

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D++  R + +L
Sbjct: 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDDLAVR-EAIL 803

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N     +R + L     + +A+ HG+M + + E VM+ 
Sbjct: 804 REVLRGGQVYYLYNDVE-----NIEKATQRLSELVPE--ARVALGHGQMRERELERVMND 856

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ TT+IE GID+  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL 
Sbjct: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAWLLT 916

Query: 597 -HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            HP  ++ +++ RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 917 PHPKAMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEGQSG 965


>gi|293608212|ref|ZP_06690515.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828785|gb|EFF87147.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 1153

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 148/430 (34%), Positives = 229/430 (53%), Gaps = 23/430 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    V+  +  +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFGFEVDQSLYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K +E +A G+  I++GTH L Q+++Q+  L L++
Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHTKNIEDLAEGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T +       I E I R    L  G + Y++  +++  E+   N R +V           
Sbjct: 793 TFVQEHTEASIKEAILR---ELLRGGQVYFLHNEVDTIERAAENIRVLVPE--------- 840

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQ
Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  
Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960

Query: 631 GEILGIKQSG 640
           GE+LG +QSG
Sbjct: 961 GELLGEQQSG 970


>gi|326567865|gb|EGE17966.1| transcription-repair coupling factor [Moraxella catarrhalis 12P80B1]
          Length = 1184

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 149/412 (36%), Positives = 228/412 (55%), Gaps = 25/412 (6%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL ++ +   + GI  +++    +       F  T  Q  AI  ++ DM Q   M R++ 
Sbjct: 604  LLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLIC 663

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VA+ A   AV+AG Q  ++ P  +LA QH + F+ ++  +  I +E ++  
Sbjct: 664  GDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFA-DWPIKIESLSRF 722

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              + H+   L  +A G   I+IGTH L QD +++ +L L+I+DE+HRFGV+ + ++    
Sbjct: 723  GNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQ 782

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            T    L MTATPIPRTL +   G  DIS I   PA R  IKT ++P  + DE I+  + +
Sbjct: 783  TNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLP--KSDETIK--EAI 838

Query: 479  LSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L E   G + Y++   +   E      R +V           + +A+ HG+M++ +   V
Sbjct: 839  LREILRGGQVYYLHNDVASIEAAADTLRELVGE---------ARVAVAHGQMNERELSVV 889

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            M+ F +    +L+A+T+IE GIDV +A+ III  A+ FG+AQLHQLRGRVGR    + C 
Sbjct: 890  MNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCY 949

Query: 594  LLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            L+      LS ++  RL+ +        GF++A EDL+ R  GEILG +QSG
Sbjct: 950  LMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSG 1001


>gi|326575775|gb|EGE25698.1| transcription-repair coupling factor [Moraxella catarrhalis CO72]
          Length = 1184

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 149/412 (36%), Positives = 228/412 (55%), Gaps = 25/412 (6%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL ++ +   + GI  +++    +       F  T  Q  AI  ++ DM Q   M R++ 
Sbjct: 604  LLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLIC 663

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VA+ A   AV+AG Q  ++ P  +LA QH + F+ ++  +  I +E ++  
Sbjct: 664  GDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFA-DWPIKIESLSRF 722

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              + H+   L  +A G   I+IGTH L QD +++ +L L+I+DE+HRFGV+ + ++    
Sbjct: 723  GNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQ 782

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            T    L MTATPIPRTL +   G  DIS I   PA R  IKT ++P  + DE I+  + +
Sbjct: 783  TNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLP--KSDETIK--EAI 838

Query: 479  LSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L E   G + Y++   +   E      R +V           + +A+ HG+M++ +   V
Sbjct: 839  LREILRGGQVYYLHNDVASIEAAADTLRELVGE---------ARVAVAHGQMNERELSVV 889

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            M+ F +    +L+A+T+IE GIDV +A+ III  A+ FG+AQLHQLRGRVGR    + C 
Sbjct: 890  MNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCY 949

Query: 594  LLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            L+      LS ++  RL+ +        GF++A EDL+ R  GEILG +QSG
Sbjct: 950  LMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSG 1001


>gi|87241294|gb|ABD33152.1| Helicase, C-terminal; Haem peroxidase, plant/fungal/bacterial
           [Medicago truncatula]
          Length = 494

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 220/380 (57%), Gaps = 17/380 (4%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            P+ PT  Q+ A  D+ +D++++   M R++ GDVG GKT VA+ A+   V A  QA+++
Sbjct: 99  FPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAMRAIHCVVAAKKQAMVL 158

Query: 328 APIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           AP  +LA+QH++ I ++++    I V +++    ++ +   LE I +G   II+GTH+L 
Sbjct: 159 APTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTRSEKEAYLEMIKNGDLDIIVGTHSLL 218

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            + + Y  L L++VDE+ RFGV+Q+ ++    T+  VL ++ATPIPRTL L   G  D S
Sbjct: 219 GNRVVYNNLGLLVVDEEQRFGVKQKERIASFKTSVDVLTLSATPIPRTLYLALTGFRDAS 278

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I+  P  R PIKT +   ++ D+VI  +K  L    + +++ P+I        + + E 
Sbjct: 279 LISTPPPERVPIKTQLSSFSK-DKVISAIKYELDRSGQVFYVLPRI--------KGLEEA 329

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              L E F    IA+ HG+      E  M+ F  G  K+LI+T ++E G+D+ +A+ III
Sbjct: 330 MEFLEEAFPDVEIAVAHGKQFSKQLEDTMEKFTLGEIKILISTNIVESGLDIQNANTIII 389

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620
           ++ + FGLAQL+QLRGRVGR ++ +   L Y     L+  +  RL+ L+   +   GF +
Sbjct: 390 QDVQQFGLAQLYQLRGRVGRADKEAYAYLFYPDKSLLTDQALERLAALEECRELGQGFQL 449

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           AE D+  R  G I G +Q+G
Sbjct: 450 AERDMGIRGFGTIFGEQQTG 469


>gi|126641668|ref|YP_001084652.1| transcription-repair coupling protein [Acinetobacter baumannii ATCC
           17978]
          Length = 1054

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 148/430 (34%), Positives = 230/430 (53%), Gaps = 23/430 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 456 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 513

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 514 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFIAVQNGKQVAVLVPTTLLAQQHYE 573

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 574 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 633

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 634 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 693

Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T +       I E I R    L  G + Y++  ++E  E+   N R +V           
Sbjct: 694 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVETIERAAENIRVLVPE--------- 741

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQ
Sbjct: 742 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 801

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  
Sbjct: 802 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 861

Query: 631 GEILGIKQSG 640
           GE+LG +QSG
Sbjct: 862 GELLGEQQSG 871


>gi|262370461|ref|ZP_06063787.1| transcription-repair coupling protein [Acinetobacter johnsonii
           SH046]
 gi|262314803|gb|EEY95844.1| transcription-repair coupling protein [Acinetobacter johnsonii
           SH046]
          Length = 1152

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 149/428 (34%), Positives = 230/428 (53%), Gaps = 19/428 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G  ++ +G+  Q       +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQAKPGFGFELD-QGQYMQ-FASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM     M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLYDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  I +E+++         K +E +A G+  I+IGTH + Q+S+Q+  L L+I
Sbjct: 673 SFKDRFADWPIRIEVLSRFGSSKSHTKTIEDLAEGKVDIVIGTHKILQESVQFKDLGLMI 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517
           T  +  +  D V E +   L  G + Y++  ++E  E+   + R +V           + 
Sbjct: 793 T-FVQEHTGDSVKEAILRELLRGGQVYFLHNEVETIERAAESLRELVPE---------AR 842

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLH
Sbjct: 843 VAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLH 902

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE
Sbjct: 903 QLRGRVGRSHHQAYAYLLVPSIKGLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGE 962

Query: 633 ILGIKQSG 640
           +LG +QSG
Sbjct: 963 LLGEQQSG 970


>gi|326790211|ref|YP_004308032.1| transcription-repair coupling factor [Clostridium lentocellum DSM
           5427]
 gi|326540975|gb|ADZ82834.1| transcription-repair coupling factor [Clostridium lentocellum DSM
           5427]
          Length = 1179

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/377 (36%), Positives = 214/377 (56%), Gaps = 15/377 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI+D+ +DM     M R++ GDVG GKT VA+ A   AV+   Q   + P
Sbjct: 632 PYEETGDQLEAIEDVKKDMESDKIMDRLICGDVGYGKTEVAIRAAFKAVQNSKQVAYLVP 691

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHY+   +   +  I +E+++        +K+LE +A G+  II+GTH L    
Sbjct: 692 TTILAQQHYQRFAERMADYPITIELLSRFRTPKQIKKSLEGLASGKVDIIVGTHRLLSKD 751

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +Q+  L LVI+DE+ RFGV  + KL Q  T   V+ +TATPIPRTL ++ +G  D+S + 
Sbjct: 752 VQFKDLGLVIIDEEQRFGVTHKEKLKQLRTQVDVMNLTATPIPRTLHMSLIGIRDMSVLE 811

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           E P  RKP++T +I  +  D + + +   L+ G + Y++  Q+        + + E+ ++
Sbjct: 812 EAPVERKPVQTYVIEYSE-DFIKDAINRELTRGGQVYFLHNQV--------KDIEEKAHA 862

Query: 510 LHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           + E    + +A  HG+MS+ + E +M  F  G   +L+ TT+IE G+D+ +A+ II+ +A
Sbjct: 863 IQELIPKARVAFAHGQMSERELEQIMLRFIEGEIDVLVCTTIIETGLDISNANTIIMNHA 922

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEE 623
           +  GL+QL+QLRGRVGR   +    L+Y     L + +  RL  +K   +   GF IA  
Sbjct: 923 DRMGLSQLYQLRGRVGRSSRMGYAYLMYQKDKVLKEVAEKRLQAIKQFTELGAGFKIAMR 982

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G +LG +Q G
Sbjct: 983 DLEIRGAGNLLGAQQHG 999


>gi|281490512|ref|YP_003352492.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis KF147]
 gi|281374330|gb|ADA63863.1| Transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis KF147]
          Length = 1161

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 143/438 (32%), Positives = 232/438 (52%), Gaps = 25/438 (5%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  W           E ++  +  L   +Q KK  G   + +    ++      +  
Sbjct: 552 KLNDGRWRKTMSSVSKQVEDISDDLIKLYAERQAKK--GFAFSPDDTSQEEFDSGFSYVE 609

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I +I  DM  +  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  +L
Sbjct: 610 TEDQMRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQVAVLVPTTVL 669

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH+    +   N  + VE+++    +  + + L ++  G+  +IIGTH L    ++++
Sbjct: 670 AEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGRVDLIIGTHRLLSKDVEFF 729

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ + +L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 730 DLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 789

Query: 454 GRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
            R P++T ++  N     D V+      +S G + Y++  +++  E+K S    ++    
Sbjct: 790 NRYPVQTYVMETNYGVVRDAVLRE----ISRGGQVYYVYNRVDTIEQKVSQLEELIPE-- 843

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                  + I  IHG+M+++  E+ + +F  G   +L+ATT+IE G+D+ +A+ + IENA
Sbjct: 844 -------ARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNANTLFIENA 896

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623
           +  GL+QL+QLRGRVGR   ++    +Y P   LS+ S  RL  +K  TE   GF IA  
Sbjct: 897 DMMGLSQLYQLRGRVGRSNRVAYAYFMYRPEKILSEVSEKRLEAIKGFTELGSGFKIAMR 956

Query: 624 DLKQRKEGEILGIKQSGM 641
           DL  R  G +LG +QSG 
Sbjct: 957 DLSIRGAGNLLGSEQSGF 974


>gi|16331597|ref|NP_442325.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
 gi|3914015|sp|Q55750|MFD_SYNY3 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|1001661|dbj|BAA10395.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
          Length = 1199

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 141/412 (34%), Positives = 232/412 (56%), Gaps = 20/412 (4%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            + LL +  +  K++G     +    Q++  + P+ PT  Q  A++D+ +D+     M R+
Sbjct: 611  VDLLNLYAKRAKQVGYAYPPDSPWQQELEDSFPYQPTPDQLKAVQDVKRDLEGDRPMDRL 670

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            + GDVG GKT VA+ A+  AV +G  Q  ++AP  +L QQHY  +K+      I + ++ 
Sbjct: 671  VCGDVGFGKTEVAVRAIFKAVTSGNKQVALLAPTTVLTQQHYHTLKERFAPYPITIGLLN 730

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                 + +++ L ++  G+  I++GT  +   S+++  L L+++DE+ RFGV Q+ K+  
Sbjct: 731  RFRTASEKKEILAKLKSGELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKT 790

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-L 475
              T   VL +TATPIPRTL ++  G  ++S IT  P  R+PIKT + P N   EVI   +
Sbjct: 791  LKTEVDVLTLTATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYN--PEVIRTAI 848

Query: 476  KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            +  L  G + +++ P+IE  E+     R +V          ++ IAI HG+M + + ES 
Sbjct: 849  RNELDRGGQVFYVVPRIEGIEELGGQLRQMVP---------SARIAIGHGQMEESELEST 899

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            M +F +G   +L+ TT+IE G+D+   + II+E+A+ FGLAQL+QLRGRVGR    +   
Sbjct: 900  MLAFNDGEADILVCTTIIEAGLDIPRVNTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAW 959

Query: 594  LLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
            LLY     L++ +  RL  L+       G+ +A  D++ R  G +LG +QSG
Sbjct: 960  LLYPNQKQLTEKARLRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSG 1011


>gi|319789291|ref|YP_004150924.1| transcription-repair coupling factor [Thermovibrio ammonificans
           HB-1]
 gi|317113793|gb|ADU96283.1| transcription-repair coupling factor [Thermovibrio ammonificans
           HB-1]
          Length = 1058

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 145/408 (35%), Positives = 226/408 (55%), Gaps = 21/408 (5%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           + K+ K  +G  +  +  + ++  R  P+  T  Q  AI+++ +DM  +  M R++ GDV
Sbjct: 504 LYKERKSAVGERLKGDEALLREFERRFPYRLTPDQSKAIREVYRDMESERPMDRLICGDV 563

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G GKT VA+ A   AV +G Q  ++AP  +LA QHY   +K  +   + +E+++    + 
Sbjct: 564 GFGKTEVAMRAAMKAVTSGKQVAVIAPTTVLADQHYRTFRKRFKGFPVKIEMLSRFKSKK 623

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R+ LE++  G+  I+IGTH L QD +++  L L+I+DE+HRFGV+ + KLT+  +   
Sbjct: 624 EQREILEKLKRGEVDIVIGTHRLTQDDVEFKDLGLLIIDEEHRFGVKTKEKLTKLKSNID 683

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV----IERLKVV 478
           VL ++ATPIPRTL     G  DIS I   PAGR+  K V+   +  DE+    IER    
Sbjct: 684 VLYLSATPIPRTLYSALSGFRDISLIETPPAGRRGTKVVVSRYS--DELFKAAIER---E 738

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L+ G + + +   I     S    + E+   L       + ++HG+M     E VM  F 
Sbjct: 739 LARGGQVFIVQNDI-----SKLEEIKEKVERLFPGV--KVGVVHGQMRSSQIEKVMHQFF 791

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++L++T ++E G+DV  A+ +I+  AE FGL+QL+QL+GRVGRG E   C L   P
Sbjct: 792 EGELQVLVSTAIVESGLDVPTANTLIVIGAERFGLSQLYQLKGRVGRGVEKGYCYLFTTP 851

Query: 599 --PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGM 641
              L+  +  RL  +K       GF +A +DL+ R  G +LG KQSG 
Sbjct: 852 GVKLTAEAVKRLEAMKKLAPLGGGFRLALKDLEIRGAGTLLGPKQSGF 899


>gi|326559271|gb|EGE09699.1| transcription-repair coupling factor [Moraxella catarrhalis 103P14B1]
 gi|326560196|gb|EGE10584.1| transcription-repair coupling factor [Moraxella catarrhalis 7169]
 gi|326564935|gb|EGE15137.1| transcription-repair coupling factor [Moraxella catarrhalis 46P47B1]
 gi|326573327|gb|EGE23295.1| transcription-repair coupling factor [Moraxella catarrhalis 101P30B1]
 gi|326576857|gb|EGE26763.1| transcription-repair coupling factor [Moraxella catarrhalis O35E]
          Length = 1184

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 149/412 (36%), Positives = 228/412 (55%), Gaps = 25/412 (6%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL ++ +   + GI  +++    +       F  T  Q  AI  ++ DM Q   M R++ 
Sbjct: 604  LLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLIC 663

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VA+ A   AV+AG Q  ++ P  +LA QH + F+ ++  +  I +E ++  
Sbjct: 664  GDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFA-DWPIKIESLSRF 722

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              + H+   L  +A G   I+IGTH L QD +++ +L L+I+DE+HRFGV+ + ++    
Sbjct: 723  GNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQ 782

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            T    L MTATPIPRTL +   G  DIS I   PA R  IKT ++P  + DE I+  + +
Sbjct: 783  TNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLP--KSDETIK--EAI 838

Query: 479  LSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L E   G + Y++   +   E      R +V           + +A+ HG+M++ +   V
Sbjct: 839  LREILRGGQVYYLHNDVASIEAAADTLRELVGE---------ARVAVAHGQMNERELSVV 889

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            M+ F +    +L+A+T+IE GIDV +A+ III  A+ FG+AQLHQLRGRVGR    + C 
Sbjct: 890  MNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCY 949

Query: 594  LLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            L+      LS ++  RL+ +        GF++A EDL+ R  GEILG +QSG
Sbjct: 950  LMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSG 1001


>gi|307154808|ref|YP_003890192.1| transcription-repair coupling factor [Cyanothece sp. PCC 7822]
 gi|306985036|gb|ADN16917.1| transcription-repair coupling factor [Cyanothece sp. PCC 7822]
          Length = 1169

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 137/397 (34%), Positives = 223/397 (56%), Gaps = 18/397 (4%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G     +    Q++  + P+ PT  Q  A++++ +D+     M R++ GDVG GKT VA+
Sbjct: 602 GFSFPTDSPWQQELEDSFPYQPTPDQLKAVQEVKRDLESDRPMDRLVCGDVGFGKTEVAV 661

Query: 312 IAMAAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            A+  AV +G  Q   +AP  IL QQHY  +K+      I + ++      +  +  L+R
Sbjct: 662 RAIFKAVTSGNKQVAFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTPSENKDILQR 721

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           ++ G+  I++GTH L  + I++  L L+++DE+ RFGV Q+ K+    T   VL +TATP
Sbjct: 722 LSTGELDIVVGTHQLLSNKIKFKDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLTATP 781

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL ++  G  ++S IT  P  R+PIKT + P N  D +   ++  L  G + +++ P
Sbjct: 782 IPRTLYMSLSGVREMSLITTPPPSRRPIKTHLSPYNS-DVIRTAIRNELDRGGQIFYVVP 840

Query: 491 QIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           ++E  E+  +  R +V          T+ IAI HG+M   + E+ M +F NG   +L+ T
Sbjct: 841 RVEGIEEVAAEIRQMVP---------TARIAIAHGQMDVSELETTMLAFNNGEADVLVCT 891

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYT 606
           T+IE G+D+   + II+E+A+ FGL+QL+QLRGRVGR    +   L+Y     L++ +  
Sbjct: 892 TIIESGLDIPRVNTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLVYPHKAALTETARQ 951

Query: 607 RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           RL  L+       G+ +A  D++ R  G +LG +QSG
Sbjct: 952 RLRALQEFTQLGSGYQLATRDMEIRGVGNLLGAEQSG 988


>gi|163848640|ref|YP_001636684.1| transcription-repair coupling factor [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526576|ref|YP_002571047.1| transcription-repair coupling factor [Chloroflexus sp. Y-400-fl]
 gi|163669929|gb|ABY36295.1| transcription-repair coupling factor [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450455|gb|ACM54721.1| transcription-repair coupling factor [Chloroflexus sp. Y-400-fl]
          Length = 1185

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 151/429 (35%), Positives = 235/429 (54%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R+  A  + LA ++  L  ++Q K   G   + + +  +++  + P+  T  Q 
Sbjct: 563 DWERTKRKVRAAVQDLAEELLRLYAQRQLKS--GYAFSPDNEWQRELEASFPYLETDDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI ++  DM +   M R++ GDVG GKT VAL A   AV+ G Q  I+ P  +LAQQH+
Sbjct: 621 RAIAEVKADMEKPTPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAILVPTTVLAQQHF 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +  +K      + VE+++       +   +  +A G+  IIIGTH L  + + +  L LV
Sbjct: 681 DTFRKRMAAFPVTVEMLSRFRSPKEQDAIIRDLARGKIDIIIGTHRLLSNDVVFRNLGLV 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L    T   VL +TATPIPRTL +   G  D+S I   P  R PI
Sbjct: 741 IIDEEQRFGVRHKERLKLMRTEVDVLTLTATPIPRTLHMALAGIRDLSVIDTPPEDRIPI 800

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           KT ++P +   I EVI R    L    + Y +  +++     +   V ER   L     +
Sbjct: 801 KTYVVPTDDHLIQEVIRR---ELEREGQVYVVHNRVQ-----SIYHVAERLRRLVPE--A 850

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA+ HG++++ + E VM  F  G   +L+ TT+IE G+DV +A+ III++A ++GLAQL
Sbjct: 851 RIAVGHGQLAERELEQVMIDFFEGRYDVLVCTTIIESGLDVPNANTIIIDDATNYGLAQL 910

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QLRGRVGRG   +   LLY+    ++ ++  RL  ++   +   GF IA  DL+ R  G
Sbjct: 911 YQLRGRVGRGATRAYAYLLYNAARVMTNDARLRLEAIQEATELGAGFRIAMRDLEIRGAG 970

Query: 632 EILGIKQSG 640
            +LG +QSG
Sbjct: 971 NLLGAEQSG 979


>gi|326570293|gb|EGE20338.1| transcription-repair coupling factor [Moraxella catarrhalis BC8]
          Length = 1184

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 149/412 (36%), Positives = 228/412 (55%), Gaps = 25/412 (6%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL ++ +   + GI  +++    +       F  T  Q  AI  ++ DM Q   M R++ 
Sbjct: 604  LLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLIC 663

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VA+ A   AV+AG Q  ++ P  +LA QH + F+ ++  +  I +E ++  
Sbjct: 664  GDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFA-DWPIKIESLSRF 722

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              + H+   L  +A G   I+IGTH L QD +++ +L L+I+DE+HRFGV+ + ++    
Sbjct: 723  GNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQ 782

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            T    L MTATPIPRTL +   G  DIS I   PA R  IKT ++P  + DE I+  + +
Sbjct: 783  TNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLP--KSDETIK--EAI 838

Query: 479  LSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L E   G + Y++   +   E      R +V           + +A+ HG+M++ +   V
Sbjct: 839  LREILRGGQVYYLHNDVASIEAAADTLRELVGE---------ARVAVAHGQMNERELSVV 889

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            M+ F +    +L+A+T+IE GIDV +A+ III  A+ FG+AQLHQLRGRVGR    + C 
Sbjct: 890  MNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCY 949

Query: 594  LLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            L+      LS ++  RL+ +        GF++A EDL+ R  GEILG +QSG
Sbjct: 950  LMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSG 1001


>gi|326566625|gb|EGE16767.1| transcription-repair coupling factor [Moraxella catarrhalis BC1]
          Length = 1184

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 149/412 (36%), Positives = 228/412 (55%), Gaps = 25/412 (6%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL ++ +   + GI  +++    +       F  T  Q  AI  ++ DM Q   M R++ 
Sbjct: 604  LLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQSKPMDRLIC 663

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VA+ A   AV+AG Q  ++ P  +LA QH + F+ ++  +  I +E ++  
Sbjct: 664  GDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFA-DWPIKIESLSRF 722

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              + H+   L  +A G   I+IGTH L QD +++ +L L+I+DE+HRFGV+ + ++    
Sbjct: 723  GNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQ 782

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            T    L MTATPIPRTL +   G  DIS I   PA R  IKT ++P  + DE I+  + +
Sbjct: 783  TNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLP--KSDETIK--EAI 838

Query: 479  LSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L E   G + Y++   +   E      R +V           + +A+ HG+M++ +   V
Sbjct: 839  LREILRGGQVYYLHNDVASIEAAADTLRELVGE---------ARVAVAHGQMNERELSVV 889

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            M+ F +    +L+A+T+IE GIDV +A+ III  A+ FG+AQLHQLRGRVGR    + C 
Sbjct: 890  MNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCY 949

Query: 594  LLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            L+      LS ++  RL+ +        GF++A EDL+ R  GEILG +QSG
Sbjct: 950  LMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSG 1001


>gi|193077268|gb|ABO12050.2| transcription-repair coupling protein [Acinetobacter baumannii ATCC
           17978]
          Length = 1153

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 148/430 (34%), Positives = 230/430 (53%), Gaps = 23/430 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFIAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T +       I E I R    L  G + Y++  ++E  E+   N R +V           
Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVETIERAAENIRVLVPE--------- 840

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQ
Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  
Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960

Query: 631 GEILGIKQSG 640
           GE+LG +QSG
Sbjct: 961 GELLGEQQSG 970


>gi|300723616|ref|YP_003712921.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630138|emb|CBJ90775.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus
           nematophila ATCC 19061]
          Length = 1148

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 142/387 (36%), Positives = 211/387 (54%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   ++ PF  T  QE  I  +L DM Q   M R++ GDVG GKT VA+ A   ++    
Sbjct: 590 QLFCQSFPFDTTPDQEQTINAVLDDMCQPIAMDRLVCGDVGFGKTEVAMRAAFLSIINNK 649

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       +++ ++  A G+  IIIGT
Sbjct: 650 QVAVLVPTTLLAQQHYDNFRDRFANWPVHIEVMSRFRSVREQQQVIDMAAEGKVDIIIGT 709

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  + +  L L+IVDE+HRFGV+ + ++        VL +TATPIPRTL +   G 
Sbjct: 710 HKLLQSDLCWKDLGLLIVDEEHRFGVRHKERIKAIRADVDVLTLTATPIPRTLNMAMSGM 769

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
            D+S I   PA R  +KT    +   D ++ R  ++  +  G + Y++   +E  EK  +
Sbjct: 770 RDLSIIATPPARRLAVKTF---VREYDSLVVRESILREILRGGQVYYLYNDVENIEKTRA 826

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + I + HG+M + D E VM  F +    +L+ TT+IE GID+ 
Sbjct: 827 RLEELVPE---------ARIVVGHGQMRERDLERVMTDFHHQRFNVLVCTTIIETGIDIP 877

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED 616
            A+ IIIE A+H GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED
Sbjct: 878 SANTIIIERADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAQKRLEAIASLED 937

Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSG 640
              GF +A  DL+ R  GE+LG  QSG
Sbjct: 938 LGAGFALATHDLEIRGAGELLGEDQSG 964


>gi|312869845|ref|ZP_07729986.1| transcription-repair coupling factor [Lactobacillus oris PB013-T2-3]
 gi|311094624|gb|EFQ52927.1| transcription-repair coupling factor [Lactobacillus oris PB013-T2-3]
          Length = 1178

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 147/455 (32%), Positives = 246/455 (54%), Gaps = 23/455 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R   +  E +A ++  L  +++  K    P   +  +  +   N P++ T+ Q 
Sbjct: 571  EWAKTKRRVESKVEDIADELVDLYAKREAAKGYAFP--ADDYLQAQFDANFPYNETRDQL 628

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +IK++ +DM +   M R+L GDVG GKT VA+ A+  AV  G Q   + P  +LAQQH+
Sbjct: 629  RSIKEVKRDMEKPRPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTVLAQQHF 688

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + + K      + + +++        ++    +  G   I++GTH +    +Q+  L LV
Sbjct: 689  DTLSKSFAGFPVKIALMSRFKTNQELKETDAGLVDGSVDIVVGTHRILSKDVQFKDLGLV 748

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL +TATPIPRTL ++ LG  D+S +   PAGR PI
Sbjct: 749  IVDEEQRFGVKHKERLKELKNNVDVLTLTATPIPRTLNMSMLGVRDLSVLETPPAGRFPI 808

Query: 459  KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            +T ++  N   I + I R    ++ G + Y++  ++ + +E+     V +  SL     +
Sbjct: 809  QTYVMEQNDGAIRDGITR---EMNRGGQVYYLHNRVNDIEET-----VLKLQSLVPE--A 858

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             I  IHG+MS+ + E+V+  F      +L+ T++IE G+D+ + + + +ENA+H GLAQL
Sbjct: 859  RIGYIHGKMSENELETVLYDFIQDNYDVLVTTSIIETGVDIPNVNTLFVENADHLGLAQL 918

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
            +Q+RGR+GR   ++    +Y P   L++    RL+ +++ TE   GF IA  DL  R  G
Sbjct: 919  YQIRGRIGRSNRVAYAYFMYQPNKVLTEQGEKRLAAIRDFTELGSGFKIAMRDLAIRGAG 978

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLE--IARKDAK 664
             ILG +Q G    +    +L+ S+L   +ARK  K
Sbjct: 979  NILGKQQHGFIDSV--GYDLYSSMLNEAVARKQGK 1011


>gi|253580889|ref|ZP_04858151.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847731|gb|EES75699.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1107

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 161/491 (32%), Positives = 260/491 (52%), Gaps = 23/491 (4%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWT-SPARERLAYDELLAGQIALLLMRKQFKKE 250
           D LQK S    ++A  +     K    EW  + ++ R A   +    + L  +R++ +  
Sbjct: 491 DCLQKYSGADASKAPKL----NKLGTQEWNKTKSKVRGAVKNIAKELVELYAVRQEKEGY 546

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
           +  P  V  +  +++    P+  T+ Q SAI+D  +DM     M R++ GDVG GKT VA
Sbjct: 547 VCGPDTVWQREFEEMF---PYEETEDQLSAIEDAKRDMESTRIMDRLICGDVGYGKTEVA 603

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           L A    V+   Q   +AP  ILAQQ Y    +  +   + VE++      A ++KA+E 
Sbjct: 604 LRAAFKEVQESRQVAYLAPTTILAQQIYNTFVQRMKEFPVRVELLCRFRTPAQQKKAIED 663

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           +  GQ  +IIGTH +    +Q+  L L+IVDE+ RFGV  + K+ Q      VL +TATP
Sbjct: 664 LKKGQVDVIIGTHRILSKDVQFKNLGLLIVDEEQRFGVTHKEKIKQLKKDVDVLTLTATP 723

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL ++ +G  D+S + E P  R PI+T ++  +  + V E +   L  G + Y++  
Sbjct: 724 IPRTLHMSLIGIRDMSVLEEPPMDRMPIQTYVMEYDE-ETVREAINRELRRGGQVYYVYN 782

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           ++     ++   V  R   L     + +   HG+MS+ + E+VM SF NG   +L++TT+
Sbjct: 783 RV-----TDIADVALRIAKLVPD--ARVDFAHGQMSERELENVMYSFVNGDIDVLVSTTI 835

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL 608
           IE G+D+ + + +II +++ +GL+QL+QLRGR+GR    +   L+Y     L + +  RL
Sbjct: 836 IETGLDISNVNTMIIHDSDRYGLSQLYQLRGRIGRSNRTAYAFLMYRKNVMLKETAEKRL 895

Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           + ++   D   GF IA  DL+ R  G +LG +Q G    +    +L+  +L  A K+AK 
Sbjct: 896 AAIREYTDLGSGFKIAMRDLELRGAGNLLGAQQHGHMNAV--GYDLYCKMLNEAVKEAKG 953

Query: 666 ILTQDPDLTSV 676
           I T +   TSV
Sbjct: 954 IHTMEDFETSV 964


>gi|15671995|ref|NP_266169.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12722849|gb|AAK04111.1|AE006240_9 transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 1161

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 143/438 (32%), Positives = 232/438 (52%), Gaps = 25/438 (5%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  W           E ++  +  L   +Q KK  G   + +    ++      +  
Sbjct: 552 KLNDGRWRKTMSSVSKQVEDISDDLIKLYAERQAKK--GFAFSPDDTSQEEFDSGFSYVE 609

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I +I  DM  +  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  +L
Sbjct: 610 TEDQMRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQVAVLVPTTVL 669

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH+    +   N  + VE+++    +  + + L ++  G+  +IIGTH L    ++++
Sbjct: 670 AEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGRVDLIIGTHRLLSKDVEFF 729

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ + +L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 730 DLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 789

Query: 454 GRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
            R P++T ++  N     D V+      +S G + Y++  +++  E+K S    ++    
Sbjct: 790 NRYPVQTYVMETNYGVVRDAVLRE----ISRGGQVYYVYNRVDTIEQKVSQLEELIPE-- 843

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                  + I  IHG+M+++  E+ + +F  G   +L+ATT+IE G+D+ +A+ + IENA
Sbjct: 844 -------ARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNANTLFIENA 896

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623
           +  GL+QL+QLRGRVGR   ++    +Y P   LS+ S  RL  +K  TE   GF IA  
Sbjct: 897 DMMGLSQLYQLRGRVGRSNRVAYAYFMYRPEKILSEVSEKRLEAIKGFTELGSGFKIAMR 956

Query: 624 DLKQRKEGEILGIKQSGM 641
           DL  R  G +LG +QSG 
Sbjct: 957 DLSIRGAGNLLGSEQSGF 974


>gi|146319860|ref|YP_001199571.1| transcription-repair coupling factor [Streptococcus suis 98HAH33]
 gi|145690666|gb|ABP91171.1| Transcription-repair coupling factor (superfamily II helicase)
           [Streptococcus suis 98HAH33]
          Length = 845

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 144/395 (36%), Positives = 224/395 (56%), Gaps = 23/395 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I +I +DM + + M R+L GDVG GKT VA+ A   AV  G Q  I+ P  +L
Sbjct: 295 TDDQLRSIDEIKKDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVL 354

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   ++      + V++++    +A + K LE++  GQ  I+IGTH L    + + 
Sbjct: 355 AQQHYANFQERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILIGTHRLLSKDVVFA 414

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + +L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 415 DLGLLVIDEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSMLGIRDLSVIETPPT 474

Query: 454 GRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNS 509
            R P++T ++  N   I + + R    +  G + Y++  +++  E+K S  + +V     
Sbjct: 475 NRYPVQTYVMETNPSVIRDAMLR---EIDRGGQVYYLYNKVDTIEQKVSELKELVPE--- 528

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 ++I  +HG+MS+I  E+ + +F  G   +L+ TT+IE G+D+ +A+ + IENA+
Sbjct: 529 ------ATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENAD 582

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEED 624
           H GL+ L+QLRGRVGR   I+   L+Y P   L++ +  RL  +K  TE   GF IA +D
Sbjct: 583 HMGLSTLYQLRGRVGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQD 642

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L  R  G ILG  QSG    +    E++  LLE A
Sbjct: 643 LSIRGAGNILGAAQSGFIDSV--GYEMYSQLLEQA 675


>gi|296113202|ref|YP_003627140.1| transcription-repair coupling factor [Moraxella catarrhalis RH4]
 gi|295920896|gb|ADG61247.1| transcription-repair coupling factor [Moraxella catarrhalis RH4]
          Length = 1184

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 149/411 (36%), Positives = 228/411 (55%), Gaps = 23/411 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL ++ +   + GI  +++    +       F  T  Q  AI  ++ DM Q   M R++ 
Sbjct: 604  LLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQSKPMDRLIC 663

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VA+ A   AV+AG Q  ++ P  +LA QH + F+ ++  +  I +E ++  
Sbjct: 664  GDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFA-DWPIKIESLSRF 722

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              + H+   L  +A G   I+IGTH L QD +++ +L L+I+DE+HRFGV+ + ++    
Sbjct: 723  GNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQ 782

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER--LK 476
            T    L MTATPIPRTL +   G  DIS I   PA R  IKT ++P  + DE I+   L+
Sbjct: 783  TNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLP--KSDETIKEAILR 840

Query: 477  VVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             +L  G + Y++   +   E      R +V           + +A+ HG+M++ +   VM
Sbjct: 841  EIL-RGGQVYYLHNDVASIEAAADTLRELVGE---------ARVAVAHGQMNERELSVVM 890

Query: 535  DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            + F +    +L+A+T+IE GIDV +A+ III  A+ FG+AQLHQLRGRVGR    + C L
Sbjct: 891  NDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCYL 950

Query: 595  LYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            +      LS ++  RL+ +        GF++A EDL+ R  GEILG +QSG
Sbjct: 951  MVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSG 1001


>gi|326571030|gb|EGE21054.1| transcription-repair coupling factor [Moraxella catarrhalis BC7]
          Length = 1184

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 149/412 (36%), Positives = 228/412 (55%), Gaps = 25/412 (6%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL ++ +   + GI  +++    +       F  T  Q  AI  ++ DM Q   M R++ 
Sbjct: 604  LLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLIC 663

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VA+ A   AV+AG Q  ++ P  +LA QH + F+ ++  +  I +E ++  
Sbjct: 664  GDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFA-DWPIKIESLSRF 722

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              + H+   L  +A G   I+IGTH L QD +++ +L L+I+DE+HRFGV+ + ++    
Sbjct: 723  GNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQ 782

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            T    L MTATPIPRTL +   G  DIS I   PA R  IKT ++P  + DE I+  + +
Sbjct: 783  TNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLP--KSDETIK--EAI 838

Query: 479  LSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L E   G + Y++   +   E      R +V           + +A+ HG+M++ +   V
Sbjct: 839  LREILRGGQVYYLHNDVASIEAAADTLRELVGE---------ARVAVAHGQMNERELSVV 889

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            M+ F +    +L+A+T+IE GIDV +A+ III  A+ FG+AQLHQLRGRVGR    + C 
Sbjct: 890  MNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCY 949

Query: 594  LLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            L+      LS ++  RL+ +        GF++A EDL+ R  GEILG +QSG
Sbjct: 950  LMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSG 1001


>gi|160914796|ref|ZP_02077010.1| hypothetical protein EUBDOL_00803 [Eubacterium dolichum DSM 3991]
 gi|158433336|gb|EDP11625.1| hypothetical protein EUBDOL_00803 [Eubacterium dolichum DSM 3991]
          Length = 1143

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 232/430 (53%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+       LA ++  L   ++  + IG   + + ++ ++  ++  +  T  Q 
Sbjct: 550 EWEKTKRKVSEKIAQLAQRLVHLYASRE--EHIGFAFSKDSELQKQFEQDFDYELTHDQA 607

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A+K+I QDM     M R+L GDVG GKT VA  A   AV    Q   + P  IL+ QHY
Sbjct: 608 RAVKEIKQDMESSKPMDRLLCGDVGFGKTEVAARAAFKAVVDNKQVAFLCPTTILSLQHY 667

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +   +  +N  + +E+I   +P A +++ +E I  G   I+IGTH L    IQ+  L L+
Sbjct: 668 KTFTRRFENYPVRIEVINRFIPMAKQKQIMEDIKAGSIDILIGTHRLLSKDIQFQDLGLL 727

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + K+ +      VL ++ATPIPRTL ++ +G   +S++   P  R P+
Sbjct: 728 VIDEEQRFGVEHKEKIKEFKNTVDVLSLSATPIPRTLQMSLIGIRSLSQLNTPPQNRMPV 787

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +I  N   I E+I+R    L+   + +++         +N + +      L E    
Sbjct: 788 QTYVIEKNFAMIKEIIQR---ELARNGQVFYLY--------NNVKEIYNVARKLREALPD 836

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             I + HG+MS  D E VM  F     ++L+ TT+IE GID+ +A+ I+I+ A+HFGLAQ
Sbjct: 837 VEIGVAHGQMSREDIEDVMLQFTENHYQVLVCTTIIETGIDIPNANTILIDEADHFGLAQ 896

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
           L+Q++GRVGR + ++   L+Y P   LS+ +  RL  +K       G+ IA  DL  R  
Sbjct: 897 LYQIKGRVGRSDRLAYAYLMYSPQRQLSEIAMKRLKSIKEFTQLGSGYKIAMRDLTIRGA 956

Query: 631 GEILGIKQSG 640
           G++LG +Q+G
Sbjct: 957 GDMLGPQQAG 966


>gi|302757661|ref|XP_002962254.1| hypothetical protein SELMODRAFT_77276 [Selaginella moellendorffii]
 gi|300170913|gb|EFJ37514.1| hypothetical protein SELMODRAFT_77276 [Selaginella moellendorffii]
          Length = 704

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 141/385 (36%), Positives = 219/385 (56%), Gaps = 16/385 (4%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQ-KNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           K     P++PT  Q  A  D+ +D++  +  M R++ GDVG GKT VA+ A+  AV A  
Sbjct: 142 KFAGKFPYTPTPDQIKAFLDVERDLTDAETPMDRLICGDVGFGKTEVAMRAIFYAVSAKK 201

Query: 323 QAVIMAPIGILAQQHYEFIK-KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP  +LA+QH+E IK ++     I V +++       RR  +  I  G  +I +G
Sbjct: 202 QVMVLAPTTVLAKQHHESIKERFANFPDIKVALLSRFQNNVDRRAVIAGINDGVVNIAVG 261

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH+L  ++IQY K+ L++VDE+ RFGV Q+ K++   T   +L ++ATPIPRTL +   G
Sbjct: 262 THSLLGNNIQYEKVGLLVVDEEQRFGVAQKEKISTLKTTVDILTLSATPIPRTLHMALSG 321

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D S +T  P  R+PIKT +   ++ D V + +K  L    + +++ P+I    + N  
Sbjct: 322 FRDASLMTTPPPERRPIKTHVCVYSQ-DMVKDAIKAELDRQGQVFYVVPRI----QGNME 376

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           S  ++   L      SIA  HG+    + E+ M  F      +L+ T +IE G+D+   +
Sbjct: 377 STEKKLKLLVPGVQVSIA--HGKKCATELEATMTKFTEKGTSILLCTNIIESGLDIPTVN 434

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNT---E 615
            II+EN + FGLAQ++QLRGRVGR ++++   +L HPP   LS ++  RLS L++     
Sbjct: 435 TIIVENVQMFGLAQIYQLRGRVGRADKVAHAYML-HPPKDFLSSDALERLSALEDCCALG 493

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSG 640
            GF +AE D+  R  G I G KQSG
Sbjct: 494 QGFQLAERDMAIRGIGSIFGEKQSG 518


>gi|224475645|ref|YP_002633251.1| putative transcription-repair coupling factor [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222420252|emb|CAL27066.1| putative transcription-repair coupling factor [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 1172

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 215/382 (56%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM ++  M R+L GDVG GKT VAL A   AV  G Q   +
Sbjct: 616 DFPYDLTADQSKSIVEIKDDMEKERPMDRLLCGDVGYGKTEVALRAAFKAVMEGKQVAFL 675

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +E+++        ++  + +  G   I++GTH L  
Sbjct: 676 VPTTILAQQHYETLIERMQDFPVNIELMSRFRTPKEVKETKKGLEDGTVDIVVGTHKLLA 735

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             ++Y  L L++VDE+ RFGV+ + ++    T   VL +TATPIPRTL ++ LG  D+S 
Sbjct: 736 KDVKYKDLGLLVVDEEQRFGVRHKERIKSLKTNVDVLTLTATPIPRTLHMSMLGVRDLSV 795

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS G +A+++  +++        S+ E
Sbjct: 796 IETPPENRFPVQTYVLEQNSNFIKEALER---ELSRGGQAFYLYNKVQ--------SIYE 844

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++I + HGRM++ + E  M  F +G   +L+ TT+IE G+DV +A+ +I
Sbjct: 845 KKEQLQMLMPEANIGVAHGRMTERELEDTMIGFVDGEYDILVTTTIIETGVDVPNANTLI 904

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   +     L HP    LS+ +  RL  +K  TE   GF
Sbjct: 905 IEDADRFGLSQLYQLRGRVGRSSRVGYAYFL-HPTNKVLSETAEERLQAIKEFTELGSGF 963

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 964 KIAMRDLNIRGAGNLLGKQQHG 985


>gi|167623544|ref|YP_001673838.1| transcription-repair coupling factor [Shewanella halifaxensis
           HAW-EB4]
 gi|167353566|gb|ABZ76179.1| transcription-repair coupling factor [Shewanella halifaxensis
           HAW-EB4]
          Length = 1157

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 140/383 (36%), Positives = 215/383 (56%), Gaps = 23/383 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  QE++I  +L+DM     M R++ GDVG GKT VA+ A   AV  G Q  I+
Sbjct: 604 SFPYEETVDQETSINAVLEDMRSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAIL 663

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHYE  K    +    +E+++       + + ++ + +G+  I+IGTH L Q
Sbjct: 664 VPTTLLAQQHYENFKDRFADWPFKIEVMSRFKTAKEQTQVMKDLLNGKVDIVIGTHKLLQ 723

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              ++  L L+++DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 724 SEAKFENLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSI 783

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRS 502
           I   PA R  +KT    +   DE   R + +L E   G + Y++   +E  EK+ +    
Sbjct: 784 IATPPAKRLAVKTF---VREYDEATIR-EALLREILRGGQVYFLHNSVETIEKRAAEISE 839

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           ++           + +   HG+M + + E VM  F +    +L+ TT+IE GIDV  A+ 
Sbjct: 840 LLPE---------ARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANT 890

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---G 617
           I+IE A++FGLAQLHQLRGRVGR    +   L+  HP  ++K++  RL  +   ED   G
Sbjct: 891 IVIERADNFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTKDARKRLEAIGALEDLGAG 950

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F++A +DL+ R  GE+LG +QSG
Sbjct: 951 FMLATQDLEIRGAGELLGDEQSG 973


>gi|158337270|ref|YP_001518445.1| transcription-repair coupling factor [Acaryochloris marina
           MBIC11017]
 gi|158307511|gb|ABW29128.1| transcription-repair coupling factor [Acaryochloris marina
           MBIC11017]
          Length = 1164

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 140/410 (34%), Positives = 226/410 (55%), Gaps = 17/410 (4%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + LL +  Q  ++ G    ++    +++  + P+ PT  Q  A +D+ +DM     M R+
Sbjct: 577 VDLLKLYAQRAQQEGFTFPLDQPWQEEMEDSFPYQPTADQLKAAQDVKRDMENPRPMDRL 636

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA  A+  AV AG Q   +AP  IL QQHY  +K+      I + ++  
Sbjct: 637 VCGDVGFGKTEVATRAVFKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYPIQIGLLNR 696

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 R+    R+  G+  I++GTH L   S+ +  L L+++DE+ RFGV Q+ K+   
Sbjct: 697 FRSAEERKDIQNRLKTGELDIVVGTHQLLGKSVNFRDLGLLVIDEEQRFGVNQKEKIKTL 756

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            T   VL ++ATPIPRTL +   G  ++S IT  P  R+PIKT + P +  + +   ++ 
Sbjct: 757 KTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLSPYD-PESIRSAVRQ 815

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDS 536
            L  G + +++ P++E         + E    L E   S+ IAI HG+M + + E+ M +
Sbjct: 816 ELDRGGQIFYVVPRVE--------GIEEVAGKLREMVPSARIAIAHGQMVEGELEATMLT 867

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F NG  ++L+ TT+IE G+D+   + I+IE+A+ FGL+QL+QLRGRVGR   I +   L+
Sbjct: 868 FSNGDAEILVCTTIIESGLDIPRVNTILIEDAQKFGLSQLYQLRGRVGRA-GIQAHAWLF 926

Query: 597 HP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           +P    L++ +  RL  L+       G+ +A  D++ R  G +LG +QSG
Sbjct: 927 YPNQSSLTEKARKRLRALQEFSQLGSGYQLAVRDMEIRGVGNLLGAEQSG 976


>gi|319757180|gb|ADV69122.1| transcription-repair coupling factor [Streptococcus suis JS14]
          Length = 1164

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 216/377 (57%), Gaps = 21/377 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I +I +DM + + M R+L GDVG GKT VA+ A   AV  G Q  I+ P  +L
Sbjct: 614 TDDQLRSIDEIKKDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   ++      + V++++    +A + K LE++  GQ  I+IGTH L    + + 
Sbjct: 674 AQQHYANFQERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILIGTHRLLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + +L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLLVIDEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNS 509
            R P++T ++  N   I + + R    +  G + Y++  +++  E+K S  + +V     
Sbjct: 794 NRYPVQTYVMETNPSVIRDAMLR---EIDRGGQVYYLYNKVDTIEQKVSELKELVPE--- 847

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 ++I  +HG+MS+I  E+ + +F  G   +L+ TT+IE G+D+ +A+ + IENA+
Sbjct: 848 ------ATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENAD 901

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEED 624
           H GL+ L+QLRGRVGR   I+   L+Y P   L++ +  RL  +K  TE   GF IA +D
Sbjct: 902 HMGLSTLYQLRGRVGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQD 961

Query: 625 LKQRKEGEILGIKQSGM 641
           L  R  G ILG  QSG 
Sbjct: 962 LSIRGAGNILGAAQSGF 978


>gi|146317670|ref|YP_001197382.1| transcription-repair coupling factor [Streptococcus suis 05ZYH33]
 gi|253750931|ref|YP_003024072.1| transcription-repair coupling factor [Streptococcus suis SC84]
 gi|253752830|ref|YP_003025970.1| transcription-repair coupling factor [Streptococcus suis P1/7]
 gi|253754655|ref|YP_003027795.1| transcription-repair coupling factor [Streptococcus suis BM407]
 gi|145688476|gb|ABP88982.1| Transcription-repair coupling factor (superfamily II helicase)
           [Streptococcus suis 05ZYH33]
 gi|251815220|emb|CAZ50784.1| putative transcription-repair coupling factor [Streptococcus suis
           SC84]
 gi|251817119|emb|CAZ54840.1| putative transcription-repair coupling factor [Streptococcus suis
           BM407]
 gi|251819075|emb|CAR44089.1| putative transcription-repair coupling factor [Streptococcus suis
           P1/7]
 gi|292557472|gb|ADE30473.1| Transcription-repair coupling factor [Streptococcus suis GZ1]
          Length = 1164

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 216/377 (57%), Gaps = 21/377 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I +I +DM + + M R+L GDVG GKT VA+ A   AV  G Q  I+ P  +L
Sbjct: 614 TDDQLRSIDEIKKDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   ++      + V++++    +A + K LE++  GQ  I+IGTH L    + + 
Sbjct: 674 AQQHYANFQERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILIGTHRLLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + +L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLLVIDEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNS 509
            R P++T ++  N   I + + R    +  G + Y++  +++  E+K S  + +V     
Sbjct: 794 NRYPVQTYVMETNPSVIRDAMLR---EIDRGGQVYYLYNKVDTIEQKVSELKELVPE--- 847

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 ++I  +HG+MS+I  E+ + +F  G   +L+ TT+IE G+D+ +A+ + IENA+
Sbjct: 848 ------ATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENAD 901

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEED 624
           H GL+ L+QLRGRVGR   I+   L+Y P   L++ +  RL  +K  TE   GF IA +D
Sbjct: 902 HMGLSTLYQLRGRVGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQD 961

Query: 625 LKQRKEGEILGIKQSGM 641
           L  R  G ILG  QSG 
Sbjct: 962 LSIRGAGNILGAAQSGF 978


>gi|256846696|ref|ZP_05552152.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_36A2]
 gi|256717916|gb|EEU31473.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_36A2]
          Length = 981

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 141/377 (37%), Positives = 219/377 (58%), Gaps = 17/377 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF+ T +Q  AI+D+ +DM     M R++ GDVG GKT VA+ A   AV  G Q +++ P
Sbjct: 452 PFTETPAQSKAIEDVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDGKQVILLVP 511

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHYE   +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D 
Sbjct: 512 TTVLAEQHYERFSERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDD 571

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  + L+I+DE+ +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I 
Sbjct: 572 IKFKDVGLLIIDEEQKFGVKAKEKLKKIKGNIDVLTLTATPIPRTLNLSLLGIRDLSVID 631

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P GR+ I T  I  N+  I ++I  L  +  EG + ++I   ++  E K    R ++ 
Sbjct: 632 TSPEGRQKIHTEYIDNNKNLIKDII--LSEISREG-QVFYIFNSVKMIESKVKEIRELLP 688

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            +          +  IHG+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +II
Sbjct: 689 EY--------IKVGYIHGQMLPRDIKKNIQEFENGNIDVLVATTIIENGIDIENANTMII 740

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEE 623
           E  E  GL+Q++QLRGR+GR  + S C +L +   +KN+  R   ++  +   G  +A E
Sbjct: 741 EGVEKLGLSQVYQLRGRIGRSTKKSYCYMLMNENKTKNAKKREKSIREFDSLTGLDLAME 800

Query: 624 DLKQRKEGEILGIKQSG 640
           D K R  GEILG KQ G
Sbjct: 801 DSKIRGVGEILGEKQHG 817


>gi|119512690|ref|ZP_01631763.1| transcriptional-repair coupling factor [Nodularia spumigena
           CCY9414]
 gi|119462657|gb|EAW43621.1| transcriptional-repair coupling factor [Nodularia spumigena
           CCY9414]
          Length = 1164

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 135/382 (35%), Positives = 217/382 (56%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  A++D+ +DM     M R++ GDVG GKT VA+ A+  AV +G Q  ++
Sbjct: 612 SFPYQATTDQLKAVQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTSGKQVALL 671

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  IL QQHY  +K+      + + ++        RR   +R+A G+  I++GTH L  
Sbjct: 672 APTTILTQQHYHTLKERFAPYPVNIGLLNRFRSAEERRTIQKRLATGELDIVVGTHQLLG 731

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
            ++ +  L L++VDE+ RFGV Q+ K+    T   VL ++ATPIPRTL ++  G  ++S 
Sbjct: 732 KNVSFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSL 791

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
           IT  P  R+PIKT + P++   E++   ++  L  G + +++ P++E  E+  +N R ++
Sbjct: 792 ITTPPPTRRPIKTHLAPLS--PEIVRSAIRQELDRGGQVFYVVPRVEGIEELTANLREMI 849

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                         AI HGR+ + + ES M +F NG   +L+ TT+IE G+D+   + I+
Sbjct: 850 P---------GGKFAIAHGRLDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTIL 900

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLK---NTEDGF 618
           IE+A  FGL+QL+QLRGRVGR   I +   L++P    LS  +  RL  ++       G+
Sbjct: 901 IEDAHRFGLSQLYQLRGRVGRA-GIQAHAWLFYPKQRTLSDAARQRLRAIQEFTQLGSGY 959

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  D++ R  G +LG +QSG
Sbjct: 960 QLAMRDMEIRGVGNLLGAEQSG 981


>gi|226355564|ref|YP_002785304.1| transcription-repair coupling factor [Deinococcus deserti VCD115]
 gi|226317554|gb|ACO45550.1| putative transcription-repair coupling factor [Deinococcus deserti
           VCD115]
          Length = 1041

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 150/442 (33%), Positives = 241/442 (54%), Gaps = 31/442 (7%)

Query: 219 EWTSPARERLAYD-ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +W   A+ER   + E +AG++ +    +Q       P   E    ++I +N  F  T  Q
Sbjct: 439 DWAK-AKERARKNAEEVAGKLLVQYAARQVTPGNAFPPQPEWD--EQIEQNFKFELTSDQ 495

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           + ++K+ ++D+ + N   R++ GDVG GKT VAL A    V  G Q  I+ P  +LA+QH
Sbjct: 496 KISLKETMRDLEKPNPADRLISGDVGFGKTEVALRAAHRVVGHGRQVAILVPTTLLAEQH 555

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
                +  +   + VE ++        R  L  +  G+  I+IGTH L    I++  L L
Sbjct: 556 TSTFVERFKGLPVRVEGLSRFTSPQQARSILNDLKAGKVDILIGTHRLLSGDIEFKDLGL 615

Query: 398 VIVDEQHRFGVQQ----------------RLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           +IVDE+HRFGV Q                +L+L  +A A   L ++ATPIPRTL ++ +G
Sbjct: 616 IIVDEEHRFGVSQKEKLRALRGLPAMTDGKLELPPEARAVDTLALSATPIPRTLYMSMVG 675

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D+S I   P GRKPI+T++ P + +  V + +   +  G K ++I  +I        R
Sbjct: 676 LRDMSSIQTPPKGRKPIQTILAPFDPV-TVRDAILNEIERGGKVFYIHDRI---ASIGAR 731

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           S+  R N + E   + I + HGRM++ + E +M  F+ G   +L++TT++E G+D+ +A+
Sbjct: 732 SLYLR-NLVPE---ARIGVAHGRMNEEELEEIMLGFEQGAFDVLLSTTIVETGLDIPEAN 787

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
            I+IE A+  GLAQL+QLRGRVGR  + +   L Y P +++N+  RL  + + +D   G 
Sbjct: 788 TILIERADRLGLAQLYQLRGRVGRRAQTAYAYLFYPPRMTENAQRRLWAIADLQDLGSGH 847

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
           L+AE+D++ R  G ILG +Q G
Sbjct: 848 LLAEKDMEIRGVGNILGEEQHG 869


>gi|56750236|ref|YP_170937.1| transcription-repair coupling factor [Synechococcus elongatus PCC
            6301]
 gi|56685195|dbj|BAD78417.1| transcription-repair coupling factor [Synechococcus elongatus PCC
            6301]
          Length = 1153

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 148/447 (33%), Positives = 242/447 (54%), Gaps = 20/447 (4%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            + LL +  Q  ++ G     +    Q++  + P+ PT  Q  A++ + +DM     M R+
Sbjct: 570  VDLLKLYAQRSQQEGHAYPPDQPWQQELEESFPYQPTADQLKAVEAVKRDMESPQPMDRL 629

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GDVG GKT VA+ A+  AV AG Q  ++AP  IL QQHY  +K+      I + ++  
Sbjct: 630  VCGDVGFGKTEVAVRAIFKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYPIQIGLLNR 689

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                + R+   +R+A G+  +++GT  L     Q+  L L++VDE+ RFGV Q+ K+   
Sbjct: 690  FRTASERQNIQQRLATGELDVVVGTQQLLSKGTQFRDLGLLVVDEEQRFGVNQKEKIKAL 749

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             T   VL ++ATPIPRTL +   G  ++S IT  P  R+PIKT ++P + ++ V   +  
Sbjct: 750  KTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLMPYD-LEAVRTAISQ 808

Query: 478  VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             +  G + +++ P++E        ++  R   L E   S  IA+ HG+M + + E+ M +
Sbjct: 809  EIDRGGQVFYVVPRVE-----GIEAIATR---LQEMLPSLRIAVAHGQMPEGELEATMLA 860

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F N    ++I TT+IE G+D+   + I+IE+A+ FGL+QL+QLRGRVGR   I +   L+
Sbjct: 861  FNNNEADVMICTTIIESGLDIPRVNTILIEDAQRFGLSQLYQLRGRVGRA-GIQAHAWLF 919

Query: 597  HPP---LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIA 647
            +P    LS  +  RL  ++       G+ +A  DL+ R  G +LG++QSG  +   F + 
Sbjct: 920  YPGETVLSDQARQRLRAIQEFTQLGSGYQLAMRDLEIRGVGNLLGVEQSGQMEAIGFDLY 979

Query: 648  QPELHDSLLEIARKDAKHILTQDPDLT 674
               L +SL EI  +D   +     DL+
Sbjct: 980  MEMLQESLQEIRGQDIPQVDDTQIDLS 1006


>gi|325568171|ref|ZP_08144612.1| transcription-repair coupling factor [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158372|gb|EGC70523.1| transcription-repair coupling factor [Enterococcus casseliflavus
           ATCC 12755]
          Length = 1172

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 237/431 (54%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  A  E +A  + LL  +++ +K  G     +    ++     P+S T  Q 
Sbjct: 568 EWAKTKRKVTAKIEDIADDLILLYAKRESEK--GYAFQPDDAYQKEFEDAFPYSETDDQL 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 626 RSTAEIKRDMEKEKPMDRLLVGDVGFGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +    +   + V +++    +  + + +E++  GQ  I++GTH L    +++  L L+
Sbjct: 686 ETMVDRFEGFPVNVGVLSRFRTKKQQNETIEQVRKGQVDILVGTHRLLSKDVEFADLGLL 745

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746 VIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 805

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +T ++ +N   + E I+R    ++ G + +++  +++  E+K    +++V          
Sbjct: 806 QTYVMEMNPGAVREAIQR---EMARGGQVFYLYNRVDTIERKVEELQALVP--------- 853

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + IA  HG+M++I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 854 DARIAYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 913

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 914 TLYQLRGRVGRSNRVAYAYFMYEQQKVLNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 973

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 974 AGNLLGAQQHG 984


>gi|294650684|ref|ZP_06728038.1| transcription-repair coupling factor TRCF [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292823475|gb|EFF82324.1| transcription-repair coupling factor TRCF [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 1153

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 147/428 (34%), Positives = 228/428 (53%), Gaps = 19/428 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++     +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDHIAYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM     M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNAKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +T + +E+++         K +E +A G+  I++GTH + Q++IQ+  L L+I
Sbjct: 673 SFKDRFADTAVRIEVLSRFGSNKAHLKIIEDLADGKVDIVVGTHKILQENIQFNNLGLMI 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517
           T  +  +  D + E +   L  G + Y++  ++E  E+   N R +V           + 
Sbjct: 793 T-FVQEHTDDSIKEAILRELLRGGQVYFLHNEVETIERAAENIRHLVPE---------AR 842

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ IIIE A+  GLAQLH
Sbjct: 843 VAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQLH 902

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE
Sbjct: 903 QLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGE 962

Query: 633 ILGIKQSG 640
           +LG +QSG
Sbjct: 963 LLGEQQSG 970


>gi|262372249|ref|ZP_06065528.1| transcription-repair coupling factor [Acinetobacter junii SH205]
 gi|262312274|gb|EEY93359.1| transcription-repair coupling factor [Acinetobacter junii SH205]
          Length = 1153

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 146/429 (34%), Positives = 231/429 (53%), Gaps = 21/429 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G   +++     +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFDLDHTAYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM     M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHYE
Sbjct: 613 AIESTLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNNKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +T + +E+++         K +E +A G+  I++GTH + Q+++Q+  L L+I
Sbjct: 673 SFKDRFADTAVRIEVLSRFGSNKTHLKIIEDLADGKVDIVVGTHKILQENVQFKNLGLMI 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517
           T  +  +  D V E +   L  G + Y++  +++  E+   + R++V           + 
Sbjct: 793 T-FVQEHTDDSVKEAILRELLRGGQVYFLHNEVDTIERAAESIRTLVPE---------AR 842

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ IIIE A+  GLAQLH
Sbjct: 843 VAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQLH 902

Query: 578 QLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           QLRGRVGR    +   LL  P L     ++  RL  ++       GF++A EDL+ R  G
Sbjct: 903 QLRGRVGRSHHQAYAYLLV-PSLKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAG 961

Query: 632 EILGIKQSG 640
           E+LG +QSG
Sbjct: 962 ELLGEQQSG 970


>gi|262275596|ref|ZP_06053405.1| transcription-repair coupling factor [Grimontia hollisae CIP
           101886]
 gi|262219404|gb|EEY70720.1| transcription-repair coupling factor [Grimontia hollisae CIP
           101886]
          Length = 1154

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 146/382 (38%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q+ AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++
Sbjct: 601 GFPFEETADQKQAINAVLSDMCQPIAMDRLVCGDVGFGKTEVAMRAAFLAVNNSKQVAVL 660

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  + VE+++       ++  L  +A G+  I+IGTH L Q
Sbjct: 661 VPTTLLAQQHFENFRDRFANQPVRVEVLSRFKSAKEQKLILADVAEGKVDILIGTHKLLQ 720

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             + ++ L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 721 SDVIFHDLGLLIVDEEHRFGVRQKEKVKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 780

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVV 504
           I   P+ R  IKT +    R   +I   + VL E   G + Y++   I+        S+ 
Sbjct: 781 IATPPSRRLAIKTFV--RERESSLIR--EAVLREIMRGGQVYFLHNDID--------SIE 828

Query: 505 ERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +  N L E    + I + HG+M + + E +M  F +    +L+ TT+IE GIDV  A+ I
Sbjct: 829 KTANELAELVPEARITVAHGQMRERELERIMSDFYHQRFNVLVCTTIIETGIDVPTANTI 888

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GF 618
           I++ A+H GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF
Sbjct: 889 IMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAIASLEDLGAGF 948

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 949 TLATHDLEIRGAGELLGDEQSG 970


>gi|90413103|ref|ZP_01221100.1| putative transcription-repair coupling factor [Photobacterium
           profundum 3TCK]
 gi|90325946|gb|EAS42392.1| putative transcription-repair coupling factor [Photobacterium
           profundum 3TCK]
          Length = 1151

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 139/382 (36%), Positives = 211/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A++   Q  ++
Sbjct: 600 GFPFEETHDQALAINSVLSDMCQPRAMDRLVCGDVGFGKTEVAMRAAFVAIDNNKQVTVL 659

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    NT + VE+++       +++ +     G+  I+IGTH L  
Sbjct: 660 VPTTLLAQQHFENFRDRFANTAVRVEVLSRFKTAKEQKQVMLDAEDGKIDILIGTHKLLN 719

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
            S++Y+ L L++VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 720 ASVKYHDLGLLVVDEEHRFGVRQKEKIKAIRADIDILTLTATPIPRTLNMAMSGMRDLSI 779

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  IKT    +   D+ I R  V+  ++ G + Y++  +++  EK       +
Sbjct: 780 IATPPARRLAIKTF---VRERDDAIVREAVLREITRGGQVYFLHNEVDSIEKTTEELAKL 836

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +           + I   HG+M + + E VM  F +    LL+ TT+IE GID+  A+ I
Sbjct: 837 IPE---------ARITFAHGQMRERELEKVMGDFYHQRFNLLVCTTIIETGIDIPTANTI 887

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GF 618
           I+  A++ GLAQLHQLRGRVGR    +   LL  +   ++K++  RL  +++ ED   GF
Sbjct: 888 IMNRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHKKRMTKDAVKRLEAIESLEDLGAGF 947

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 948 TLATHDLEIRGAGELLGDEQSG 969


>gi|302388384|ref|YP_003824206.1| transcription-repair coupling factor [Clostridium saccharolyticum
           WM1]
 gi|302199012|gb|ADL06583.1| transcription-repair coupling factor [Clostridium saccharolyticum
           WM1]
          Length = 1179

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 140/390 (35%), Positives = 216/390 (55%), Gaps = 16/390 (4%)

Query: 258 EGKIAQKILRNI-PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           E  + QK    + P+  T+ Q  AI+    DM  +  M R++ GDVG GKT +AL A   
Sbjct: 615 EDTVWQKEFEEMFPYEETEDQWDAIESTKSDMESRKIMDRLICGDVGYGKTEIALRAAFK 674

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AV+ G Q V + P  ILAQQHY    +  ++  + V++++        +K LE +  G  
Sbjct: 675 AVQDGKQVVYLVPTTILAQQHYNTFAQRMKDFPVRVDLMSRFRTPGQMKKTLEDLKRGMV 734

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I+IGTH +    +Q+  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL 
Sbjct: 735 DIVIGTHRVLSKDVQFKDLGLLIIDEEQRFGVAHKEKIKQLKENVDVLTLTATPIPRTLH 794

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEK 495
           ++ +G  D+S + E P  R PI+T ++  N  DE++ E +   LS G + Y++  ++   
Sbjct: 795 MSLVGIRDMSVLEEPPVDRMPIQTYVMEYN--DEMVREAIHRELSRGGQVYYVYNRV--- 849

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             SN   V    + L     +++   HG+M + + E +M  F NG   +L+ TT+IE G+
Sbjct: 850 --SNIDEVANHISGLVPE--AAVTFAHGQMHEHELERIMFDFVNGEIDVLVCTTIIETGL 905

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN 613
           D+ +A+ +II++A+H GL+QL+QLRGRVGR    S   L+Y     L + +  RL  ++ 
Sbjct: 906 DIPNANTMIIQDADHMGLSQLYQLRGRVGRSSRTSYAFLMYKRDKLLKEEAEKRLQAIRE 965

Query: 614 -TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
            TE   G  IA  DL+ R  G +LG +Q G
Sbjct: 966 FTELGSGIKIAMRDLEIRGAGNVLGAEQHG 995


>gi|257877903|ref|ZP_05657556.1| transcription-repair coupling factor [Enterococcus casseliflavus
           EC20]
 gi|257812069|gb|EEV40889.1| transcription-repair coupling factor [Enterococcus casseliflavus
           EC20]
          Length = 1172

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 237/431 (54%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  A  E +A  + LL  +++ +K  G     +    ++     P+S T  Q 
Sbjct: 568 EWAKTKRKVTAKIEDIADDLILLYAKRESEK--GYAFQPDDAYQKEFEDAFPYSETDDQL 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 626 RSTAEIKRDMEKEKPMDRLLVGDVGFGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +    +   + V +++    +  + + +E++  GQ  I++GTH L    +++  L L+
Sbjct: 686 ETMVDRFEGFPVNVGVLSRFRTKKQQNETIEQVRKGQVDILVGTHRLLSKDVEFADLGLL 745

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746 VIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 805

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +T ++ +N   + E I+R    ++ G + +++  +++  E+K    +++V          
Sbjct: 806 QTYVMEMNPGAVREAIQR---EMARGGQVFYLYNRVDTIERKVEELQALVP--------- 853

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + IA  HG+M++I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 854 DARIAYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 913

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 914 TLYQLRGRVGRSNRVAYAYFMYEQQKVLNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 973

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 974 AGNLLGAQQHG 984


>gi|257868298|ref|ZP_05647951.1| transcription-repair coupling factor [Enterococcus casseliflavus
           EC30]
 gi|257874429|ref|ZP_05654082.1| transcription-repair coupling factor [Enterococcus casseliflavus
           EC10]
 gi|257802412|gb|EEV31284.1| transcription-repair coupling factor [Enterococcus casseliflavus
           EC30]
 gi|257808593|gb|EEV37415.1| transcription-repair coupling factor [Enterococcus casseliflavus
           EC10]
          Length = 1172

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 237/431 (54%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  A  E +A  + LL  +++ +K  G     +    ++     P+S T  Q 
Sbjct: 568 EWAKTKRKVTAKIEDIADDLILLYAKRESEK--GYAFQPDDAYQKEFEDAFPYSETDDQL 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 626 RSTAEIKRDMEKEKPMDRLLVGDVGFGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +    +   + V +++    +  + + +E++  GQ  I++GTH L    +++  L L+
Sbjct: 686 ETMVDRFEGFPVNVGVLSRFRTKKQQNETIEQVRKGQVDILVGTHRLLSKDVEFADLGLL 745

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746 VIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 805

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +T ++ +N   + E I+R    ++ G + +++  +++  E+K    +++V          
Sbjct: 806 QTYVMEMNPGAVREAIQR---EMARGGQVFYLYNRVDTIERKVEELQALVP--------- 853

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + IA  HG+M++I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 854 DARIAYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 913

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 914 TLYQLRGRVGRSNRVAYAYFMYEQQKVLNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 973

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 974 AGNLLGAQQHG 984


>gi|86146945|ref|ZP_01065263.1| transcription-repair coupling factor [Vibrio sp. MED222]
 gi|85835195|gb|EAQ53335.1| transcription-repair coupling factor [Vibrio sp. MED222]
          Length = 1153

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 137/382 (35%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  ++ DM Q   M R++ GDVG GKT VA+ A     +   Q  ++
Sbjct: 599 GFPFEETDDQAMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVCTDNSKQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       ++  ++ +A G+  I++GTH L  
Sbjct: 659 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKLIMQDVADGKVDILVGTHKLLS 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L L++VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 719 SDIKFKDLGLLVVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 778

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  IKT    +   D+ I R  V+  +  G + Y++  Q++  EK   + + +
Sbjct: 779 IATPPARRLAIKTF---VRESDDAIVREAVLREIMRGGQVYFLHNQVDTIEKTAESLQKL 835

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +           + + + HG+M + + E +M+ F +    LL+ TT+IE GIDV  A+ I
Sbjct: 836 IPE---------ARVTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTI 886

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618
           +++ A++ GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF
Sbjct: 887 LMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGF 946

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 947 TLATHDLEIRGAGELLGDEQSG 968


>gi|77360776|ref|YP_340351.1| transcription-repair ATP-dependent coupling factor
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76875687|emb|CAI86908.1| transcription-repair ATP-dependent coupling factor
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 1157

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 151/411 (36%), Positives = 223/411 (54%), Gaps = 23/411 (5%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G    ++    ++   + PF  T  Q +AI+ +L DM  K  M R++ 
Sbjct: 577 LLDIYAQRQAKPGNKFTLDAPAYRQFSDSFPFEETDDQRNAIEAVLGDMQSKQAMDRLVC 636

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  I+ P  +LAQQH+E  K    +  I V +++   
Sbjct: 637 GDVGFGKTEVAMRAAFVAVNDNKQVAILVPTTLLAQQHFENFKDRFADFPIEVGVLSRFN 696

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               ++  LE++A+G+  I+IGTH L Q  I +  L L+IVDE+HRFGV+Q+ K+     
Sbjct: 697 SPKEQKDTLEKMANGKLDIVIGTHKLIQADIIFNDLGLLIVDEEHRFGVRQKEKIKALRA 756

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT +    R  E+I   + VL
Sbjct: 757 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV--RQRDVELIR--EAVL 812

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVM 534
            E   G + Y++   +E          +ER       +   +S+   HG+M + + E +M
Sbjct: 813 REIKRGGQVYFLHNNVE---------TIERVAQEISEWVPEASVTSAHGQMREQELEQIM 863

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F +    +L+ TT+IE GID+  A+ II++ A+  GLAQLHQLRGRVGR    +   L
Sbjct: 864 ADFYHQKYNVLVCTTIIETGIDIPTANTIIMDRADKLGLAQLHQLRGRVGRSHHQAYAYL 923

Query: 595 LYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           L   P  LSK++  RL  +++ ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 924 LTGDPKALSKDASKRLQAIESLEDLGAGFALATHDLEIRGAGELLGDDQSG 974


>gi|256028682|ref|ZP_05442516.1| transcription-repair coupling factor [Fusobacterium sp. D11]
 gi|289766594|ref|ZP_06525972.1| transcription-repair coupling factor [Fusobacterium sp. D11]
 gi|289718149|gb|EFD82161.1| transcription-repair coupling factor [Fusobacterium sp. D11]
          Length = 963

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 223/375 (59%), Gaps = 13/375 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF+ T +Q  AI+D+ +DM     M R++ GDVG GKT VA+ A   AV  G Q +++ P
Sbjct: 437 PFTETPAQLKAIEDVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDGKQVILLVP 496

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHYE   +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D 
Sbjct: 497 TTVLAEQHYERFSERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDD 556

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  + L+I+DE+ +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I 
Sbjct: 557 IKFKDVGLLIIDEEQKFGVKAKEKLKKIKGDIDVLTLTATPIPRTLNLSLLGIRDLSVID 616

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P GR+ I T  I  N+  I ++I  L  +  EG + ++I   + ++ ES  + + E  
Sbjct: 617 TSPEGRQKIHTEYIDNNKNLIKDII--LSEISREG-QVFYIFNSV-KRIESKVKEIRE-- 670

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L E+    +  IHG+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +IIE 
Sbjct: 671 -LLPEYI--KVDYIHGQMLPRDIKKNIQEFENGNIDVLVATTIIENGIDIENANTMIIEG 727

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDL 625
            E  GL+Q++QLRGR+GR  + S C +L +   +KN+  R   ++  ++  G  +A ED 
Sbjct: 728 VEKLGLSQVYQLRGRIGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGLDLAMEDS 787

Query: 626 KQRKEGEILGIKQSG 640
           K R  GEILG KQ G
Sbjct: 788 KIRGVGEILGEKQHG 802


>gi|212634585|ref|YP_002311110.1| transcription-repair coupling factor [Shewanella piezotolerans WP3]
 gi|212556069|gb|ACJ28523.1| Transcription-repair coupling factor [Shewanella piezotolerans WP3]
          Length = 1158

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 150/438 (34%), Positives = 234/438 (53%), Gaps = 21/438 (4%)

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
           N  K  +  W+   R+ +     +A ++  +  R+Q +      I+ E + AQ    + P
Sbjct: 550 NLNKLGNETWSKAKRKAIEKIRDVAAELLDVYARRQARPGDACKIDQE-EYAQ-FASSFP 607

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE+AI  +L DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P 
Sbjct: 608 FEETVDQETAITAVLDDMRTPMAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPT 667

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LAQQH+E  +    +    +E+++       + + ++ +  G+  I+IGTH L Q   
Sbjct: 668 TLLAQQHFENFQDRFADWPFKIEVMSRFKTAKEQNQVMKELTDGKVDIVIGTHKLLQSEA 727

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+++DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I  
Sbjct: 728 KFENLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 787

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
            PA R  +KT +   +  D  I E L   +  G + Y++   +E  EK+ +    ++   
Sbjct: 788 PPAKRLAVKTFVREYD--DATIREALLREILRGGQVYFLHNSVETIEKRAAEISELLPE- 844

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + +   HG+M + + E VM  F +    +L+ TT+IE GIDV  A+ I+IE 
Sbjct: 845 --------ARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIVIER 896

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTED---GFLIAE 622
           A+ FGLAQLHQLRGRVGR    +   L+  HP  ++K++  RL  +   ED   GF++A 
Sbjct: 897 ADKFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTKDARKRLEAIGALEDLGAGFMLAT 956

Query: 623 EDLKQRKEGEILGIKQSG 640
           +DL+ R  GE+LG +QSG
Sbjct: 957 QDLEIRGAGELLGDEQSG 974


>gi|291278661|ref|YP_003495496.1| transcription-repair coupling factor [Deferribacter desulfuricans
           SSM1]
 gi|290753363|dbj|BAI79740.1| transcription-repair coupling factor [Deferribacter desulfuricans
           SSM1]
          Length = 1111

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 142/411 (34%), Positives = 228/411 (55%), Gaps = 18/411 (4%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + +L +  + K   G      G+I + +    P+  T+ Q   I ++  DM  +  M R+
Sbjct: 536 VDILKIYAERKSRRGFAFTKSGEILKTVELRFPYEETEDQIVVINEVFNDMESETPMERL 595

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIIT 356
           + GDVG GKT VA+ A A AVE   Q  I+AP  +L +QHY+ FI+++ ++  + ++ I+
Sbjct: 596 VCGDVGFGKTEVAIRAAAKAVENYKQVAILAPTTVLVRQHYQNFIERF-KDMPVEIDYIS 654

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                   ++ALER+  G+  IIIGTH L    +++Y L L+IVDE+ RFGV  + K+  
Sbjct: 655 RFKTSREIKRALERLKKGEIDIIIGTHRLLSKDVEFYDLGLLIVDEEQRFGVNHKEKIKA 714

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
             +   VL +TATPIPRTL L+  G  D+S I   P  R+P+   II  +  +E+   + 
Sbjct: 715 LKSNIDVLTLTATPIPRTLQLSLSGLRDMSIINTPPQDREPVSIKIIKND--EELNNAIL 772

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMD 535
             L  G + Y++  ++E+ ++  +         L E F  S+ +I HG+M     + V +
Sbjct: 773 KELKRGGQVYFLHNKVEDIEKIAYM--------LKEKFPLSNTSIAHGQMDAKVLDEVFE 824

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F  G   +L+ TT+IE G+D+ +A+ I+I NA  FGLAQL+QL+GRVGRG +   C L 
Sbjct: 825 KFYQGDVDILVCTTIIENGLDIANANTIVINNAHTFGLAQLYQLKGRVGRGNKRGYCYLR 884

Query: 596 Y--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
              +  +++ +  RL ++    D   GF I+  DL+ R  G++LG +QSG 
Sbjct: 885 IPQNAKINEVARKRLKIISQLSDLGSGFKISTYDLQIRGAGDLLGAEQSGF 935


>gi|227528907|ref|ZP_03958956.1| transcription-repair coupling factor [Lactobacillus vaginalis ATCC
           49540]
 gi|227351181|gb|EEJ41472.1| transcription-repair coupling factor [Lactobacillus vaginalis ATCC
           49540]
          Length = 1170

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 144/429 (33%), Positives = 235/429 (54%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R   +  E +A ++  L  +++ +K    P   +  + ++   N P+S T+ Q 
Sbjct: 569 EWAKTKRRVASKVEDIADELVDLYAKRETEKGYAFP--KDDYLQKQFDANFPYSETRDQL 626

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A+  AV  G Q   + P  +LAQQHY
Sbjct: 627 RSIAEIKEDMEKAKPMDRLLVGDVGYGKTEVALRAIFKAVTGGKQVAFLVPTTVLAQQHY 686

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +KK  +   I + +++    +   ++  + +A G   +++GTH +    + +  L L+
Sbjct: 687 DTMKKRFEGFPIEIALMSRFKTRKELKETEKGLADGTVDVVVGTHRILSKDVHFKDLGLL 746

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ LG  D+S +   PAGR PI
Sbjct: 747 IVDEEQRFGVKHKEKLKQLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPI 806

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++  N   I + I R    +  G + Y++  ++ + +E+     V R   L     +
Sbjct: 807 QTYVMEQNSGAIRDGILR---EMQRGGQVYYLHNRVMDIEET-----VARLQQLVPE--A 856

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I  I G+MS+   ESV+  F  G   +L+ T++IE G+D+ + + + +ENA+  GLAQL
Sbjct: 857 RIGYIDGQMSENQLESVLYEFIQGGYDVLVTTSIIETGVDIPNVNTLFVENADRMGLAQL 916

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +Q+RGR+GR   ++    +Y P   L++    RL+ +++ TE   GF IA  DL  R  G
Sbjct: 917 YQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLSIRGAG 976

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 977 NLLGKQQHG 985


>gi|205371994|ref|ZP_03224812.1| transcription-repair coupling factor [Bacillus coahuilensis m4-4]
          Length = 1181

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 147/436 (33%), Positives = 238/436 (54%), Gaps = 25/436 (5%)

Query: 251  IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            +G   N +G++ ++     P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA
Sbjct: 600  VGYAFNPDGEMQREFESLFPYQETEDQTRSIQEIKRDMEKSRPMDRLLCGDVGYGKTEVA 659

Query: 311  LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            + A   A+  G Q   + P  ILAQQHYE +K+  Q+  + V +++    +  +   ++ 
Sbjct: 660  IRAAFKAIADGKQVAFLVPTTILAQQHYETMKERFQDFPVNVSLLSRFRTRKQQTDTIKG 719

Query: 371  IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
            +  G   I++GTH L    I Y  L L+I+DE+ RFGV  + K+ Q  T   VL +TATP
Sbjct: 720  LKDGSVDIVVGTHRLLSKEIGYKDLGLLIIDEEQRFGVTHKEKIKQLKTNIDVLTLTATP 779

Query: 431  IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWI 488
            IPRTL ++ LG  D+S I   P  R P++T ++  N   + E IER    L+   + +++
Sbjct: 780  IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEYNGALVREAIER---ELAREGQVFFL 836

Query: 489  CPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              ++E  E+K      +V           + +   HGRM++ + ESV+ SF  G   +L+
Sbjct: 837  YNRVEDIERKADEIAMLVPE---------ARVVYAHGRMTENELESVILSFLEGEADVLV 887

Query: 547  ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNS 604
             TT+IE G+D+ +A+ +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS  +
Sbjct: 888  TTTIIETGVDIPNANTLIVHDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSDVA 947

Query: 605  YTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP-ELHDSLLEIAR 660
              RL  +K  TE   GF IA  DL  R  G +LG +Q G   F+ +   +L+  +L+ A 
Sbjct: 948  EKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHG---FIDSVGFDLYSQMLKDAI 1004

Query: 661  KDAKHILTQDPDLTSV 676
            ++ K +L +D  + + 
Sbjct: 1005 EERKSVLKEDKSMKTT 1020


>gi|154707070|ref|YP_001424606.1| transcription-repair coupling factor [Coxiella burnetii Dugway
           5J108-111]
 gi|154356356|gb|ABS77818.1| transcription-repair coupling factor [Coxiella burnetii Dugway
           5J108-111]
          Length = 1157

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 142/378 (37%), Positives = 210/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q +AI D++ DMS K  M R++ GDVG GKT VA+ A   AV+   Q  ++ P
Sbjct: 612 PFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIAVQNNKQVAVLVP 671

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH+   +    +  + +  I+    Q  R++  + +A G+  IIIGTH L    
Sbjct: 672 TTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKIDIIIGTHKLLSKD 731

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+IVDE+HRFGV Q+ ++        +L +TATPIPRTL ++  G  D+S IT
Sbjct: 732 IRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNMSLSGIRDLSLIT 791

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             PA R  +KT +   +   I E I R  +    G + Y++   +     +   +  E+ 
Sbjct: 792 TPPAKRLSVKTFVHDYSHVLIREAILRENL---RGGQVYFLHNDV-----ATLAATAEKL 843

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            ++     + +AI HG+M + D E VM  F +    LL+ TT+IE GID+  A+ III  
Sbjct: 844 RTIIPE--ARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIINR 901

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
           A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RLS +   +D   GF +A 
Sbjct: 902 ADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADAEKRLSAISQLDDLGVGFNLAT 961

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  GE+LG++QSG
Sbjct: 962 HDLEIRGAGELLGVEQSG 979


>gi|126657369|ref|ZP_01728528.1| transcription-repair coupling factor [Cyanothece sp. CCY0110]
 gi|126621356|gb|EAZ92068.1| transcription-repair coupling factor [Cyanothece sp. CCY0110]
          Length = 1160

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 142/400 (35%), Positives = 225/400 (56%), Gaps = 18/400 (4%)

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K +G    ++    Q++  + P+ PT  Q  AI+D+  D+     M R++ GDVG GKT 
Sbjct: 588 KNVGFTYPLDTPWQQELEDSFPYQPTPDQLKAIQDVKIDLESDRPMDRLVCGDVGFGKTE 647

Query: 309 VALIAMAAAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           VA+ A+  AV +G  Q   +AP  IL QQHY  +K+      I + ++      + +++ 
Sbjct: 648 VAVRAIFKAVTSGHKQVAFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTNSEKKEI 707

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           ++R+A G+  I++GT  L   SI++  L L++VDE+ RFGV Q+ K+    +   VL +T
Sbjct: 708 IDRLATGELDIVVGTQQLLGKSIKFKDLGLLVVDEEQRFGVNQKEKIKDMKSHVDVLTLT 767

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL ++  G  ++S IT  P  R+PIKT +   N  D V   ++  L  G + ++
Sbjct: 768 ATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSRYNP-DVVRTAIRNELDRGGQVFY 826

Query: 488 ICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           + P++E  E+  +  + +V          ++ IAI HG+M+  D E  M SF NG   +L
Sbjct: 827 VVPRVEGIEEVAAELKKMVP---------SARIAIGHGQMNVNDLEMTMLSFNNGDADIL 877

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKN 603
           + TT++E G+D+   + IIIE+A+ FGLAQL+QLRGRVGR    +   LLY     L++ 
Sbjct: 878 VCTTIVESGLDIPRVNTIIIEDAQKFGLAQLYQLRGRVGRAGIQAHAWLLYPSKAQLTET 937

Query: 604 SYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           +  RL  L+       G+ +A  D++ R  G +LG +QSG
Sbjct: 938 ARKRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSG 977


>gi|260550143|ref|ZP_05824357.1| transcription-repair coupling factor [Acinetobacter sp. RUH2624]
 gi|260406898|gb|EEX00377.1| transcription-repair coupling factor [Acinetobacter sp. RUH2624]
          Length = 1153

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 147/430 (34%), Positives = 229/430 (53%), Gaps = 23/430 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K +E +A G+  I++GTH L Q+++Q+  L L++
Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLADGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T +       I E I R    L  G + Y++  +++  E+   N R +V           
Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVDTIERAAENIRMLVPE--------- 840

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQ
Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  
Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960

Query: 631 GEILGIKQSG 640
           GE+LG +QSG
Sbjct: 961 GELLGEQQSG 970


>gi|254235976|ref|ZP_04929299.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
           C3719]
 gi|126167907|gb|EAZ53418.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
           C3719]
          Length = 1148

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 141/381 (37%), Positives = 212/381 (55%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q+SAI+ ++ DM     M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 597 GFPFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVL 656

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A      G+  I+IGTH L Q
Sbjct: 657 VPTTLLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVENAAREFPPGKIDILIGTHKLLQ 716

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + +++  L LV++DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 717 EDVKFANLGLVVIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 776

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
           I   PA R  ++T +  + + + VI E L   L  G + Y++  +++  EK   +   +V
Sbjct: 777 IATPPARRLSVRTFV--MEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELV 834

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + I I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+
Sbjct: 835 PE---------ARIGIGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIL 885

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619
           IE A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + N +D   GF+
Sbjct: 886 IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFV 945

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 946 LATHDLEIRGAGELLGDGQSG 966


>gi|294784401|ref|ZP_06749692.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_27]
 gi|294487973|gb|EFG35328.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_27]
          Length = 981

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 146/423 (34%), Positives = 239/423 (56%), Gaps = 20/423 (4%)

Query: 225 RERLAYD-ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           +++L+ D E+ A +I  +  ++      G   + +  + ++     PF+ T +Q  AI+D
Sbjct: 408 KDKLSEDIEIFAKEIIKIQAKRNLGN--GFKFSKDTVMQEEFEETFPFTETPAQSKAIED 465

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           + +DM     M R++ GDVG GKT VA+ A   AV  G Q +++ P  +LA+QHYE   +
Sbjct: 466 VKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDGKQVILLVPTTVLAEQHYERFSE 525

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
             +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D I++  + L+I+DE+
Sbjct: 526 RFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDDIKFKDVGLLIIDEE 585

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I   P GR+ I T  I
Sbjct: 586 QKFGVKAKEKLKKIKGNIDVLTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIHTEYI 645

Query: 464 PINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIA 519
             N+  I ++I     +  EG + ++I   ++  E K    R ++  +          + 
Sbjct: 646 DNNKNLIKDII--FSEISREG-QVFYIFNSVKMIESKVKEIRELLPEY--------IKVG 694

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +IIE  E  GL+Q++QL
Sbjct: 695 YIHGQMLPRDIKKNIQEFENGNIDVLVATTIIENGIDIENANTMIIEGVEKLGLSQVYQL 754

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDLKQRKEGEILGIK 637
           RGR+GR  + S C +L +   +KN+  R   ++  ++  G  +A ED K R  GEILG K
Sbjct: 755 RGRIGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGIDLAMEDSKIRGVGEILGEK 814

Query: 638 QSG 640
           Q G
Sbjct: 815 QHG 817


>gi|300172731|ref|YP_003771896.1| transcription-repair coupling factor [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887109|emb|CBL91077.1| transcription-repair coupling factor [Leuconostoc gasicomitatum LMG
           18811]
          Length = 1172

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 149/435 (34%), Positives = 237/435 (54%), Gaps = 28/435 (6%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  A  E +A  +  L  +++ ++    P +   ++   +    P +P   Q 
Sbjct: 565 EWAKTKRQVAAKIEDIADDLLELYAKREAQQGYAFPPDDTEQLKFDMAFGYPETP--DQI 622

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM +   M R+L GDVG GKT VAL A+  AV AG Q   +AP  IL QQHY
Sbjct: 623 RSIEEIKVDMQKVRPMDRLLVGDVGFGKTEVALRAVFKAVHAGKQVAFLAPTTILVQQHY 682

Query: 339 E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           E  + ++     I + +++     A  +  ++++   Q  I++GTH L    + +  L L
Sbjct: 683 ETMLARFNDFPNIKIGVLSRFQTTAQNKFVIKQLNEHQIDIVVGTHRLLSKDVDFLDLGL 742

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV+ + +L Q   +  VL +TATPIPRTL +  +G  D+S I   PA R P
Sbjct: 743 LIIDEEQRFGVKHKERLKQLRHSVDVLTLTATPIPRTLNMAMVGARDLSIIETPPANRYP 802

Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           I+T ++     D +I R  ++  L+ G +A+++  ++ +         ++R  S  E   
Sbjct: 803 IQTYVL---EADWIIVRNAIEKELARGGQAFYLHNRVAD---------IDRVASQIEDLV 850

Query: 516 SS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
            S  +  IHG+MS+   ESV+  F NG   +L+ TT+IE G+D+ +A+ +I+ENA+H GL
Sbjct: 851 PSARVGAIHGQMSETQLESVLYDFLNGNYDVLVTTTIIETGVDIPNANTLIVENADHMGL 910

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLSVLKN-TE--DGFLIAEEDLK 626
           +QL+QLRGRVGR   ++     Y  P S+     +  RL  +++ TE   GF IA  DL 
Sbjct: 911 SQLYQLRGRVGRSARLAYAYFTY--PFSRTPSEEAEKRLEAIRDFTELGSGFRIAMRDLS 968

Query: 627 QRKEGEILGIKQSGM 641
            R  G+ILG +Q G 
Sbjct: 969 IRGAGDILGKQQHGF 983


>gi|294781777|ref|ZP_06747110.1| transcription-repair coupling factor [Fusobacterium sp. 1_1_41FAA]
 gi|294481887|gb|EFG29655.1| transcription-repair coupling factor [Fusobacterium sp. 1_1_41FAA]
          Length = 979

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 220/377 (58%), Gaps = 17/377 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF+ T  Q  AI+D+ +DM     M R++ GDVG GKT VA+ A   A+    Q V++ P
Sbjct: 452 PFTETPGQLKAIEDVKRDMESGKVMDRLVCGDVGYGKTEVAIRAAFKAIMDEKQVVLLVP 511

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHYE   +  +N  I +EI++    +  + ++L++I +G A +IIGTH L  D 
Sbjct: 512 TTVLAEQHYERFSERFKNYPINIEILSRVQTKKEQEESLKKIENGSADLIIGTHRLLSDD 571

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+Y  + L+I+DE+ +FGV+ + KL +      +L +TATPIPRTL L+ LG  D+S I 
Sbjct: 572 IKYNDIGLLIIDEEQKFGVKAKEKLKKLKGDIDILTLTATPIPRTLNLSLLGIRDLSIID 631

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P GR+ I+T  I  N+  I ++I  L  V  EG + ++I   ++  E K    R ++ 
Sbjct: 632 TSPEGRQKIQTEYIDNNKDLIRDII--LTEVSREG-QVFYIFNSVKRIEMKSKELRELLP 688

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            +          +  IHG+M   D +  + +F+NG   +LIATT+IE GID+ +A+ +II
Sbjct: 689 EY--------IKVDYIHGQMLARDIKRAIHNFENGNTDVLIATTIIENGIDIENANTMII 740

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEE 623
           E  E  GL+Q++QLRGR+GR  + S C +L +   +KN+  R   ++  ++  G  ++ E
Sbjct: 741 EGVEKLGLSQVYQLRGRIGRSNKKSYCYMLMNENKTKNAQKREESIREFDNLTGIDLSME 800

Query: 624 DLKQRKEGEILGIKQSG 640
           D K R  GEILG KQ G
Sbjct: 801 DSKIRGVGEILGEKQHG 817


>gi|284007308|emb|CBA72650.1| transcription-repair coupling factor [Arsenophonus nasoniae]
          Length = 1146

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 143/388 (36%), Positives = 214/388 (55%), Gaps = 23/388 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +  PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   A+    
Sbjct: 590 QLFCQGFPFETTVDQEQAINAVLSDMCQPIAMDRLVCGDVGFGKTEVAMRAAFLAITNNQ 649

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQH++  +    N  + +E+++       +++ +   A G+  I+IGT
Sbjct: 650 QVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQQQIINAAAEGKVDILIGT 709

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q+ I+++ L L+I+DE+HRFGV+ +  +        +L +TATPIPRTL +   G 
Sbjct: 710 HKLLQNDIRWHALGLLIIDEEHRFGVRHKELIKSMRANVDILTLTATPIPRTLNMAMSGM 769

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKE 497
            D+S I   P+ R  +KT    + + D++I R + +L E   G + Y++   ++  EK +
Sbjct: 770 RDLSIIATPPSRRLSVKTF---VRQYDDLIVR-EAILREILRGGQVYYLFNDVKYIEKAK 825

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
               S+V           +   I HG+M + + E VM  F      +LI TT+IE GID+
Sbjct: 826 ERLESLVPE---------ARFVIGHGQMRERELERVMTDFHRQRFNVLICTTIIETGIDI 876

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTE 615
             A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  +   E
Sbjct: 877 PSANTIIIERADHFGLAQLHQLRGRVGRSYHQAYAYLLTPHPKAMTIDAQKRLEAIAALE 936

Query: 616 D---GFLIAEEDLKQRKEGEILGIKQSG 640
           D   GF +A  DL+ R  GE+LG +QSG
Sbjct: 937 DLGAGFALATHDLEIRGAGELLGAEQSG 964


>gi|242371667|ref|ZP_04817241.1| transcription-repair coupling factor [Staphylococcus epidermidis
            M23864:W1]
 gi|242350616|gb|EES42217.1| transcription-repair coupling factor [Staphylococcus epidermidis
            M23864:W1]
          Length = 1169

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 151/418 (36%), Positives = 229/418 (54%), Gaps = 23/418 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q+ +I++I  DM ++  M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 615  DFPYELTPDQDKSIEEIKSDMERERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 674

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 675  VPTTILAQQHYETLIERMQDFPVEIQLVSRFRTTKEIKETKEGLKSGYVDIVVGTHKLLG 734

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 735  KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 794

Query: 448  ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P++T ++    N I E +ER    LS   + +++  +++        S+ E
Sbjct: 795  IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 843

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 844  KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 903

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
            IE A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 904  IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 962

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
             IA  DL  R  G +LG +Q G    +    +L+  +LE A  + + I  + PD   V
Sbjct: 963  KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEETPDAPEV 1018


>gi|15806542|ref|NP_295255.1| transcription-repair coupling factor [Deinococcus radiodurans R1]
 gi|6459293|gb|AAF11095.1|AE001997_1 transcription-repair coupling factor [Deinococcus radiodurans R1]
          Length = 1054

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 138/397 (34%), Positives = 222/397 (55%), Gaps = 27/397 (6%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +++ +N  F  TK Q +A+K+ ++D+ +     R++ GDVG GKT VAL A    V  G 
Sbjct: 489 EQVEKNFEFELTKDQVTALKETMRDLEKPTPADRLISGDVGFGKTEVALRAAHRVVGHGK 548

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LA+QH     +  +   + VE ++        R  L  +  G+  I+IGT
Sbjct: 549 QVAVLVPTTLLAEQHTATFVERFKGLPVRVEGLSRFTTDKQARNILAELKAGRVDILIGT 608

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV----------------LLM 426
           H L    I++  L L+IVDE+HRFGV Q+ KL Q    P +                L +
Sbjct: 609 HRLLSGDIEFKDLGLIIVDEEHRFGVGQKEKLRQLRGLPEMVDGKLTMTGDEKAVDTLAL 668

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL ++ +G  D+S I   P GR+PI+T++ P + +  V + +   +  G K +
Sbjct: 669 SATPIPRTLYMSMVGLRDMSSIQTPPKGRRPIQTILSPFDPL-TVRDAIMTEIGRGGKVF 727

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +I  +I        RS+  R N + E   + I + HGRM++ + E +M  F+ G   +L+
Sbjct: 728 YIHDRI---ASIGARSLYLR-NLVPE---ARIGVAHGRMNEEELEEIMLGFEQGAFDVLL 780

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATT++E G+D+ +A+ I+IE ++  GLAQL+QLRGRVGR  + +   L Y P +++N+  
Sbjct: 781 ATTIVETGLDIPEANTILIERSDRLGLAQLYQLRGRVGRRAQTAYAYLFYPPRMTENAQR 840

Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           RL  + + +D   G L+AE+D++ R  G ILG +Q G
Sbjct: 841 RLWAIADLQDLGSGHLLAEKDMEIRGVGNILGEEQHG 877


>gi|314932725|ref|ZP_07840095.1| transcription-repair coupling factor [Staphylococcus caprae C87]
 gi|313654555|gb|EFS18307.1| transcription-repair coupling factor [Staphylococcus caprae C87]
          Length = 1169

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 153/419 (36%), Positives = 230/419 (54%), Gaps = 25/419 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  +I++I  DM ++  M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 615  DFPYELTPDQGKSIEEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 674

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE + +  Q+  + +++++        R+  E +  G   I++GTH L  
Sbjct: 675  VPTTILAQQHYETLIERMQDYPVEIQLVSRFRTTKEVRETKEGLKSGYVDIVVGTHKLLG 734

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 735  KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 794

Query: 448  ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P++T ++    N I E +ER    LS   + +++  +++        S+ E
Sbjct: 795  IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 843

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 844  KREQLQMLMPEANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 903

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
            IE A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 904  IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 962

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQP-ELHDSLLEIARKDAKHILTQDPDLTSV 676
             IA  DL  R  G +LG +Q G   F+ +   +L+  +LE A  + + I  + PD   V
Sbjct: 963  KIAMRDLNIRGAGNLLGKQQHG---FIDSVGFDLYSQMLEEAVNEKRGIKEETPDAPEV 1018


>gi|223044420|ref|ZP_03614453.1| transcription-repair coupling factor [Staphylococcus capitis SK14]
 gi|222442209|gb|EEE48321.1| transcription-repair coupling factor [Staphylococcus capitis SK14]
          Length = 1169

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 152/418 (36%), Positives = 228/418 (54%), Gaps = 23/418 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  +I++I  DM ++  M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 615  DFPYELTPDQGKSIEEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 674

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE + +  Q+  + +++++        R+  E +  G   I++GTH L  
Sbjct: 675  VPTTILAQQHYETLIERMQDYPVEIQLVSRFRTTKEVRETKEGLKSGYVDIVVGTHKLLG 734

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 735  KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 794

Query: 448  ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P++T ++    N I E +ER    LS   + +++  +++        S+ E
Sbjct: 795  IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 843

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 844  KREQLQMLMPEANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 903

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
            IE A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 904  IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 962

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
             IA  DL  R  G +LG +Q G    +    +L+  +LE A  + + I  + PD   V
Sbjct: 963  KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEETPDAPEV 1018


>gi|116510854|ref|YP_808070.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116106508|gb|ABJ71648.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 1162

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 142/437 (32%), Positives = 233/437 (53%), Gaps = 23/437 (5%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  W           E ++  +  L   +Q KK  G   + +    ++      +  
Sbjct: 552 KLNDGRWRKTMSSVSKQVEDISDDLIKLYAERQAKK--GFAFSPDDASQEEFDSGFSYVE 609

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I +I  DM  +  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  +L
Sbjct: 610 TEDQIRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQVAVLVPTTVL 669

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH+    +   N  + VE+++    +  + + L ++  G+  +IIGTH L    ++++
Sbjct: 670 AEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGRVDLIIGTHRLLSKDVEFF 729

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ + +L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 730 DLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 789

Query: 454 GRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNS 509
            R P++T ++  N   + + I R    +S G + Y++  +++  E+K S    ++     
Sbjct: 790 NRYPVQTYVMETNYGVVRDAILR---EISRGGQVYYVYNRVDTIEQKVSQLEELIPE--- 843

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 + I  IHG+M+++  E+ + +F  G   +L+ATT+IE G+D+ +++ + IENA+
Sbjct: 844 ------ARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNSNTLFIENAD 897

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEED 624
             GL+QL+QLRGRVGR   ++    +Y P   LS+ S  RL  +K  TE   GF IA  D
Sbjct: 898 MMGLSQLYQLRGRVGRSNRVAYAYFMYRPEKILSEVSEKRLEAIKGFTELGSGFKIAMRD 957

Query: 625 LKQRKEGEILGIKQSGM 641
           L  R  G +LG +QSG 
Sbjct: 958 LSIRGAGNLLGSEQSGF 974


>gi|239787601|emb|CAX84069.1| Transcription-repair coupling factor [uncultured bacterium]
          Length = 1178

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 145/394 (36%), Positives = 218/394 (55%), Gaps = 13/394 (3%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   +    + Q+     PF  T  Q +AI+ +L+DM++   M R++ GDVG GKT VAL
Sbjct: 610 GFGFSTPDPLLQEFAAGFPFEETPDQTAAIEAVLEDMAKSRPMDRLVCGDVGFGKTEVAL 669

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV  G Q  +++P  IL QQH+E   +      I VEI++     A ++KA+E I
Sbjct: 670 RAAFRAVMDGKQVAVLSPTTILTQQHFETFARRLAAYPITVEILSRFRTPAEQKKAVEMI 729

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           AHG   I++GTH L Q  + +  L L++VDE+ RFGV  + ++ Q      +L +TATPI
Sbjct: 730 AHGGVDIVVGTHRLLQKDVVFKDLGLLVVDEEQRFGVVHKERIKQMRATVDILTLTATPI 789

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL L   G  DIS I   P  R  I+T ++  +R  +V E +   +  G + +++   
Sbjct: 790 PRTLHLAMSGLRDISIIATPPINRLAIRTFVLQYDR-QKVREAVLREIYRGGQVFFVHNH 848

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +++      +  VE    + E   + I + HG+M +   E +M SF      LL+ TT+I
Sbjct: 849 VQDID----KMAVELTELVPE---ARIGVAHGQMREGRLEKIMLSFYRQEFNLLLCTTII 901

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLS 609
           E G+D+  A+ III  A+ FGLAQLHQLRGRVGR +  +   L   HP  LS+++  RL 
Sbjct: 902 ENGVDIPTANTIIIHRADRFGLAQLHQLRGRVGRSKHRAYAYLFIPHPQTLSEDALRRLE 961

Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            +++  +   GF +A  D++ R  G ILG +QSG
Sbjct: 962 AIESMGELGAGFTLATHDMEIRGAGNILGEEQSG 995


>gi|225850639|ref|YP_002730873.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase
           mfd) [Persephonella marina EX-H1]
 gi|225645015|gb|ACO03201.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase
           mfd) [Persephonella marina EX-H1]
          Length = 947

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 140/407 (34%), Positives = 225/407 (55%), Gaps = 16/407 (3%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + L   RKQ +++   P+ VE  + +   R+ P+  T  Q  AIKDI +D+S    M R+
Sbjct: 384 VKLYTERKQIRRD---PLVVENDLIEAFERSFPYIETPDQLKAIKDIKRDLSSDRPMERV 440

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA+ A+      G Q++++ P  +L+ QHY   K+  +   ++VE ++ 
Sbjct: 441 ICGDVGFGKTEVAIRAVFINAVNGKQSLVLVPTTVLSYQHYRNFKERLEPFGVVVENLSR 500

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
              +       +R+  G+  +IIGTH    +++++  L L+++DE+HRFGV+ + K+   
Sbjct: 501 LKSKKETEDIFKRVKEGKIDVIIGTHKALNENLKFKNLGLLVIDEEHRFGVRAKEKIKAL 560

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                 L MTATPIPRTL +   G  D+S I+  P GR   KT  + I   D + + +  
Sbjct: 561 KKDVDTLYMTATPIPRTLNMALSGLKDMSVISTPPEGRVETKT-FVSIFSEDLIKKAVNF 619

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDS 536
            L  G + +++  +IE        S+ ER + L   F  + I I HG+M   + E ++  
Sbjct: 620 ELERGGQVFYLHNRIE--------SIKERADHLSSLFRGARIGIAHGKMRPKEIEKIILE 671

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F      +L++T++IE GID+  A+ +IIE A+ FGLAQL+ LRGRVGRG   + C LL 
Sbjct: 672 FIERKIDILVSTSIIETGIDIPTANTLIIERADLFGLAQLYHLRGRVGRGNIQAYCYLLL 731

Query: 597 HPPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
            P +++N+  R+ V   L     G  ++ ED++ R  G ILG++QSG
Sbjct: 732 PPQITENAEKRIDVILRLTRPGSGLKVSIEDMQIRGVGNILGVEQSG 778


>gi|29654454|ref|NP_820146.1| transcription-repair coupling factor [Coxiella burnetii RSA 493]
 gi|29541721|gb|AAO90660.1| transcription-repair coupling factor [Coxiella burnetii RSA 493]
          Length = 1157

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 143/379 (37%), Positives = 211/379 (55%), Gaps = 19/379 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q +AI D++ DMS K  M R++ GDVG GKT VA+ A   AV+   Q  ++ P
Sbjct: 612 PFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIAVQNNKQVAVLVP 671

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH+   +    +  + +  I+    Q  R++  + +A G+  IIIGTH L    
Sbjct: 672 TTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKIDIIIGTHKLLSKD 731

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+IVDE+HRFGV Q+ ++        +L +TATPIPRTL ++  G  D+S IT
Sbjct: 732 IRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNMSLSGIRDLSLIT 791

Query: 450 EKPAGRKPIKTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
             PA R  +KT +    P+  I E I R  +    G + Y++   +     +   +  E+
Sbjct: 792 TPPAKRLSVKTFVHDYSPV-LIREAILRENL---RGGQVYFLHNDV-----ATLAATAEK 842

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             ++     + +AI HG+M + D E VM  F +    LL+ TT+IE GID+  A+ III 
Sbjct: 843 LRTIIPE--ARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIIN 900

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RLS +   +D   GF +A
Sbjct: 901 RADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADAEKRLSAISQLDDLGVGFNLA 960

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  GE+LG++QSG
Sbjct: 961 THDLEIRGAGELLGVEQSG 979


>gi|331701922|ref|YP_004398881.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129265|gb|AEB73818.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL
           B-30929]
          Length = 1178

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 140/429 (32%), Positives = 234/429 (54%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW     +  +  E +A ++  L  ++  +K    P   +  +  +     P+S T  Q 
Sbjct: 568 EWAKTKAKVASKIEDIADELIDLYAKRSAEKGYAYP--QDDSLQAEFEAAFPYSETPDQL 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I +DM  ++ M R+L GDVG GKT VAL A   A+E G Q   + P  ILAQQHY
Sbjct: 626 RSATEIKRDMETQHPMDRLLVGDVGYGKTEVALRAAFKAIEVGKQVAFLVPTTILAQQHY 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +    +   I V +++        ++ L+ +  G+  +++GTH L    +++  L L+
Sbjct: 686 ETMLDRFREYPITVRVLSRFQTAKQVKETLQGLKDGKVDVVVGTHRLLSKDVKFNDLGLL 745

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + ++ +  +   VL +TATPIPRTL ++ +G  D+S I   P+ R PI
Sbjct: 746 IIDEEQRFGVKHKERIKEMRSDVDVLTLTATPIPRTLNMSMMGVRDLSVIETPPSNRYPI 805

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +I  N   I E IER    +S G + +++  ++     S+    VE+ ++L    ++
Sbjct: 806 QTYVIEQNAGTIREAIER---EMSRGGQVFYLHNRV-----SDIEKTVEQISALVP--SA 855

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +  IHG+MS+   E ++  F NG   +L+ TT+IE G+D+ + + + +ENA+  GL+QL
Sbjct: 856 RVGYIHGQMSENQMEDILYDFINGEYDVLVTTTIIETGVDIPNVNTLFVENADRMGLSQL 915

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    +Y P   L++    RL  +++ TE   GF IA  DL  R  G
Sbjct: 916 YQLRGRIGRSSRVAYAYFMYKPNKVLTEIGEKRLEAIRDFTELGSGFKIAMRDLSIRGAG 975

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 976 NLLGKQQHG 984


>gi|77165119|ref|YP_343644.1| transcription-repair coupling factor [Nitrosococcus oceani ATCC
           19707]
 gi|254433553|ref|ZP_05047061.1| transcription-repair coupling factor [Nitrosococcus oceani AFC27]
 gi|76883433|gb|ABA58114.1| transcription-repair coupling factor [Nitrosococcus oceani ATCC
           19707]
 gi|207089886|gb|EDZ67157.1| transcription-repair coupling factor [Nitrosococcus oceani AFC27]
          Length = 1158

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 149/423 (35%), Positives = 232/423 (54%), Gaps = 20/423 (4%)

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           ARER+   ++ A  +A+   R   KK   +P+           R  PF  T  Q  AI+ 
Sbjct: 567 ARERVR--DVAAELLAIYAQRAARKK---LPLPTPDSHYTAFARAFPFEETPDQADAIQA 621

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           ++ D++    M R++ GDVG GKT VA+ A     +AG Q  ++ P  +LAQQHY+  K 
Sbjct: 622 VIADLTSDQPMDRLVCGDVGFGKTEVAMRATFIVSQAGKQVAVLVPTTLLAQQHYQSFKD 681

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
              +    VE+I+    +  +   +  IA G+A I+IGTH L Q++I++  L LVI+DE+
Sbjct: 682 RFADWPARVEVISRFRSRKEQEAVISGIADGRADIVIGTHKLLQENIRFKNLGLVIIDEE 741

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           HRFGV+Q+ ++    T   +L +TATPIPRTL ++     D+S I   PA R  IKT + 
Sbjct: 742 HRFGVRQKERMKALRTEVDILTLTATPIPRTLHMSLSNLRDLSIIATPPARRLAIKTFVR 801

Query: 464 PINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
             N  D ++ E L   +  G + Y++  ++E     +   + +R  +L     + + I H
Sbjct: 802 QWN--DNLLREALLREIKRGGQVYFLHNEVE-----SINKMAQRVQTLFPE--AKVGIAH 852

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M + + E VM +F +    +LI TT+IE GID+  A+ III  A+  GLAQL+QLRGR
Sbjct: 853 GQMRERELEQVMLNFYHRRFNVLICTTIIETGIDIPSANTIIIHRADKLGLAQLYQLRGR 912

Query: 583 VGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIK 637
           VGR    +   L+  P   ++ ++  RL  +++ E+   GF +A  D++ R  GE+LG  
Sbjct: 913 VGRSHHRAYAYLIVPPRSVMTADAIKRLDAIESLEELGAGFTLASHDMEIRGAGELLGKD 972

Query: 638 QSG 640
           QSG
Sbjct: 973 QSG 975


>gi|27469198|ref|NP_765835.1| transcription-repair coupling factor [Staphylococcus epidermidis ATCC
            12228]
 gi|81842450|sp|Q8CMT1|MFD_STAES RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|27316747|gb|AAO05922.1|AE016751_217 transcription-repair coupling factor [Staphylococcus epidermidis ATCC
            12228]
          Length = 1169

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 151/414 (36%), Positives = 225/414 (54%), Gaps = 23/414 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 615  DFPYELTPDQSKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFL 674

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE + +  Q+  + +++++        R+  E +  G   I++GTH L  
Sbjct: 675  VPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLG 734

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 735  KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 794

Query: 448  ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P++T ++    N I E +ER    LS   + +++  +++        S+ E
Sbjct: 795  IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 843

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 844  KREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 903

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
            IE A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 904  IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQTIKEFTELGSGF 962

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
             IA  DL  R  G +LG +Q G    +    +L+  +LE A  + + I  + PD
Sbjct: 963  KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEESPD 1014


>gi|161831377|ref|YP_001597022.1| transcription-repair coupling factor [Coxiella burnetii RSA 331]
 gi|161763244|gb|ABX78886.1| transcription-repair coupling factor [Coxiella burnetii RSA 331]
          Length = 1157

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 143/379 (37%), Positives = 211/379 (55%), Gaps = 19/379 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q +AI D++ DMS K  M R++ GDVG GKT VA+ A   AV+   Q  ++ P
Sbjct: 612 PFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIAVQNNKQVAVLVP 671

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH+   +    +  + +  I+    Q  R++  + +A G+  IIIGTH L    
Sbjct: 672 TTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKIDIIIGTHKLLSKD 731

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+IVDE+HRFGV Q+ ++        +L +TATPIPRTL ++  G  D+S IT
Sbjct: 732 IRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNMSLSGIRDLSLIT 791

Query: 450 EKPAGRKPIKTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
             PA R  +KT +    P+  I E I R  +    G + Y++   +     +   +  E+
Sbjct: 792 TPPAKRLSVKTFVHDYSPV-LIREAILRENL---RGGQVYFLHNDV-----ATLAATAEK 842

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             ++     + +AI HG+M + D E VM  F +    LL+ TT+IE GID+  A+ III 
Sbjct: 843 LRTIIPE--ARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIIN 900

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RLS +   +D   GF +A
Sbjct: 901 RADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADAEKRLSAISQLDDLGVGFNLA 960

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  GE+LG++QSG
Sbjct: 961 THDLEIRGAGELLGVEQSG 979


>gi|22536193|ref|NP_687044.1| transcription-repair coupling factor [Streptococcus agalactiae
            2603V/R]
 gi|25010083|ref|NP_734478.1| transcription-repair coupling factor [Streptococcus agalactiae
            NEM316]
 gi|77414464|ref|ZP_00790614.1| reticulocyte binding protein [Streptococcus agalactiae 515]
 gi|22533010|gb|AAM98916.1|AE014191_8 transcription-repair coupling factor [Streptococcus agalactiae
            2603V/R]
 gi|23094434|emb|CAD45653.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159474|gb|EAO70635.1| reticulocyte binding protein [Streptococcus agalactiae 515]
          Length = 1165

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 160/459 (34%), Positives = 251/459 (54%), Gaps = 30/459 (6%)

Query: 224  ARERLA--YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            A++R+A   +++    + L   R Q +   G   + +  +      +  +  T+ Q  +I
Sbjct: 564  AKQRVAKQVEDIADDLLKLYAERSQLQ---GFAFSPDDNMQNDFDNDFAYVETEDQLRSI 620

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            K+I QDM     M R+L GDVG GKT VA+ A   AV    Q V++ P  +LAQQH+E  
Sbjct: 621  KEIKQDMEGNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVLAQQHFENF 680

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            K+   N  + V++++    +  +   L+R++ GQ  IIIGTH L    + +  L L+++D
Sbjct: 681  KERFSNYPVTVDVLSRFRSKKEQTDTLKRLSKGQVDIIIGTHRLLSQDVVFSDLGLIVID 740

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P  R P++T 
Sbjct: 741  EEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTY 800

Query: 462  IIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517
            ++  N   + E I R    +  G + +++  +++  ++K S  + +V           +S
Sbjct: 801  VLETNPGLVREAIIR---EIDRGGQVFYVYNKVDTIDQKVSELQELVPE---------AS 848

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + +ENA+H GL+ L+
Sbjct: 849  IGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENADHMGLSTLY 908

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G 
Sbjct: 909  QLRGRVGRSNRIAYAYLMYRPDKVLTEISEKRLDAIKGFTELGSGFKIAMRDLSIRGAGN 968

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
            ILG  QSG    +    E++  LLE  IA K  K ++ Q
Sbjct: 969  ILGASQSGFIDSV--GFEMYSQLLEQAIATKQGKSLIRQ 1005


>gi|293366145|ref|ZP_06612832.1| transcription-repair coupling factor [Staphylococcus epidermidis
            M23864:W2(grey)]
 gi|291319739|gb|EFE60098.1| transcription-repair coupling factor [Staphylococcus epidermidis
            M23864:W2(grey)]
 gi|329737888|gb|EGG74116.1| transcription-repair coupling factor [Staphylococcus epidermidis
            VCU045]
          Length = 1166

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 151/414 (36%), Positives = 225/414 (54%), Gaps = 23/414 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 612  DFPYELTPDQSKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFL 671

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE + +  Q+  + +++++        R+  E +  G   I++GTH L  
Sbjct: 672  VPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLG 731

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 732  KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 791

Query: 448  ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P++T ++    N I E +ER    LS   + +++  +++        S+ E
Sbjct: 792  IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 840

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 841  KREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 900

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
            IE A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 901  IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 959

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
             IA  DL  R  G +LG +Q G    +    +L+  +LE A  + + I  + PD
Sbjct: 960  KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEESPD 1011


>gi|57866056|ref|YP_187737.1| transcription-repair coupling factor [Staphylococcus epidermidis
            RP62A]
 gi|81819455|sp|Q5HRQ2|MFD_STAEQ RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|57636714|gb|AAW53502.1| transcription-repair coupling factor [Staphylococcus epidermidis
            RP62A]
          Length = 1169

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 152/415 (36%), Positives = 227/415 (54%), Gaps = 25/415 (6%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 615  DFPYELTPDQSKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFL 674

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE + +  Q+  + +++++        R+  E +  G   I++GTH L  
Sbjct: 675  VPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLG 734

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 735  KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 794

Query: 448  ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P++T ++    N I E +ER    LS   + +++  +++        S+ E
Sbjct: 795  IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 843

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 844  KREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 903

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
            IE A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 904  IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 962

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQP-ELHDSLLEIARKDAKHILTQDPD 672
             IA  DL  R  G +LG +Q G   F+ +   +L+  +LE A  + + I  + PD
Sbjct: 963  KIAMRDLNIRGAGNLLGKQQHG---FIDSVGFDLYSQMLEEAVNEKRGIKEESPD 1014


>gi|153870816|ref|ZP_02000135.1| truncated transcription-repair coupling factor [Beggiatoa sp. PS]
 gi|152072718|gb|EDN69865.1| truncated transcription-repair coupling factor [Beggiatoa sp. PS]
          Length = 668

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 145/389 (37%), Positives = 215/389 (55%), Gaps = 25/389 (6%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +  PF  T  Q+ AI+ ++ DM     M R++ GDVG GKT VA+ A   AV  G 
Sbjct: 115 QAFAQAFPFEETPDQQEAIQGVVNDMLSTQPMDRLVCGDVGFGKTEVAMRATYIAVMDGQ 174

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  K    +  + VE ++    +  +   L+ +  GQ  I+IGT
Sbjct: 175 QTAVLVPTTLLAQQHYQTFKDRFADLPVRVEQLSRFRSKKQQTDTLKAVTEGQVDIVIGT 234

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L QD++Q+ +L LVI+DE+HRFGV+Q+ K     T   +L +TATPIPR+L +     
Sbjct: 235 HKLIQDNVQFKRLGLVIIDEEHRFGVKQKEKFKALRTEVDILTLTATPIPRSLNMALSHL 294

Query: 443 IDISKITEKPAGRKPIKTVII----PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKK 496
            D+S I   P+GR  IKT I     P+     +IE +   L  G + Y++  QIE  +K 
Sbjct: 295 RDLSIIASPPSGRLAIKTFIREWQGPL-----IIEAILRELKRGGQVYFLHNQIETIDKI 349

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               + +V           + + I HG+M + + E VM  F +    +L+ TT+IE GID
Sbjct: 350 ADEVQELVPE---------ARVRIAHGKMRERELEQVMQDFYHRRFNVLVCTTIIETGID 400

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNT 614
           V  A+ +II  A+  GLAQL+QLRGRVGR    +   LL  HP  ++K++  R+  +   
Sbjct: 401 VPTANTMIINRADKLGLAQLYQLRGRVGRSHHRAYAYLLIPHPKAMTKDAQKRIDAIGAM 460

Query: 615 ED---GFLIAEEDLKQRKEGEILGIKQSG 640
           E+   GF++A  DL+ R  GE+LG +QSG
Sbjct: 461 EELGMGFMLATHDLEIRGAGELLGGEQSG 489


>gi|165923977|ref|ZP_02219809.1| transcription-repair coupling factor [Coxiella burnetii RSA 334]
 gi|165916585|gb|EDR35189.1| transcription-repair coupling factor [Coxiella burnetii RSA 334]
          Length = 1157

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 143/379 (37%), Positives = 211/379 (55%), Gaps = 19/379 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q +AI D++ DMS K  M R++ GDVG GKT VA+ A   AV+   Q  ++ P
Sbjct: 612 PFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIAVQNNKQVAVLVP 671

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH+   +    +  + +  I+    Q  R++  + +A G+  IIIGTH L    
Sbjct: 672 TTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKIDIIIGTHKLLSKD 731

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+IVDE+HRFGV Q+ ++        +L +TATPIPRTL ++  G  D+S IT
Sbjct: 732 IRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNMSLSGIRDLSLIT 791

Query: 450 EKPAGRKPIKTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
             PA R  +KT +    P+  I E I R  +    G + Y++   +     +   +  E+
Sbjct: 792 TPPAKRLSVKTFVHYYSPV-LIREAILRENL---RGGQVYFLHNDV-----ATLAATAEK 842

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             ++     + +AI HG+M + D E VM  F +    LL+ TT+IE GID+  A+ III 
Sbjct: 843 LRTIIPE--ARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIIN 900

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RLS +   +D   GF +A
Sbjct: 901 RADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADAEKRLSAISQLDDLGVGFNLA 960

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  GE+LG++QSG
Sbjct: 961 THDLEIRGAGELLGVEQSG 979


>gi|164685710|ref|ZP_01946737.2| transcription-repair coupling factor [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218583|ref|YP_002305370.1| transcription-repair coupling factor [Coxiella burnetii CbuK_Q154]
 gi|164601218|gb|EAX32680.2| transcription-repair coupling factor [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212012845|gb|ACJ20225.1| transcription-repair coupling factor [Coxiella burnetii CbuK_Q154]
          Length = 1157

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 143/379 (37%), Positives = 211/379 (55%), Gaps = 19/379 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q +AI D++ DMS K  M R++ GDVG GKT VA+ A   AV+   Q  ++ P
Sbjct: 612 PFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIAVQNNKQVAVLVP 671

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH+   +    +  + +  I+    Q  R++  + +A G+  IIIGTH L    
Sbjct: 672 TTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKIDIIIGTHKLLSKD 731

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+IVDE+HRFGV Q+ ++        +L +TATPIPRTL ++  G  D+S IT
Sbjct: 732 IRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNMSLSGIRDLSLIT 791

Query: 450 EKPAGRKPIKTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
             PA R  +KT +    P+  I E I R  +    G + Y++   +     +   +  E+
Sbjct: 792 TPPAKRLSVKTFVHYYSPV-LIREAILRENL---RGGQVYFLHNDV-----ATLAATAEK 842

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             ++     + +AI HG+M + D E VM  F +    LL+ TT+IE GID+  A+ III 
Sbjct: 843 LRTIIPE--ARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIIN 900

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RLS +   +D   GF +A
Sbjct: 901 RADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADTEKRLSAISQLDDLGVGFNLA 960

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  GE+LG++QSG
Sbjct: 961 THDLEIRGAGELLGVEQSG 979


>gi|332971662|gb|EGK10611.1| transcription-repair coupling factor [Psychrobacter sp. 1501(2011)]
          Length = 1243

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 160/465 (34%), Positives = 246/465 (52%), Gaps = 25/465 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++ L     +A ++  +  R+Q K+  GI   V+    +       F  T  Q 
Sbjct: 637  KWDKAKQKALEQIHDVAAELLNMQARRQAKE--GIHFKVDTAQYELFASQFAFEETPDQA 694

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LA QH 
Sbjct: 695  NAIDAVIHDMKQSKPMDRLICGDVGFGKTEVAMRAAFIAVNSGYQVAVLVPTTLLAGQHE 754

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +  K    +  I VE ++    + ++ + LE +A G+  I+IGTH L Q  +++  L L+
Sbjct: 755  DNFKDRFADWPIKVETLSRFGGKKYQDQVLEDLAAGKVDIVIGTHKLLQKDVKFANLGLM 814

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+HRFGV+ +  +    +    L MTATPIPRTL +   G  D+S I   PA R  I
Sbjct: 815  IVDEEHRFGVRHKELIKALQSDVDSLSMTATPIPRTLNMALTGMRDMSIIATPPARRLAI 874

Query: 459  KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
            KT +  + + ++++ E +   L  G + Y +   +   E+   N R +V           
Sbjct: 875  KTFV--MQKTNQLMKEAILRELLRGGQVYLLHNDVASIERMAENIRELVPE--------- 923

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + + + HG+M++   E VM  F +    +L+ TT+IE GIDV +A+ IIIE A+ FGLAQ
Sbjct: 924  ARVGVAHGQMNERGLEQVMQQFYHKKFNVLVCTTIIETGIDVPNANTIIIERADKFGLAQ 983

Query: 576  LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
            LHQLRGRVGR    + C LL      L  ++  RL+ ++       GF++A EDL+ R  
Sbjct: 984  LHQLRGRVGRSHHQAYCYLLVPSIKGLKGDAKKRLNAIERANTLGAGFMLASEDLEIRGA 1043

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            GEILG +QSG  + +     L+  +LE A K  K    ++PDL +
Sbjct: 1044 GEILGKQQSGNMQAIGF--SLYMDMLERATKAIK--AGKEPDLNT 1084


>gi|226939558|ref|YP_002794631.1| Mfd [Laribacter hongkongensis HLHK9]
 gi|226714484|gb|ACO73622.1| Mfd [Laribacter hongkongensis HLHK9]
          Length = 1131

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 153/427 (35%), Positives = 230/427 (53%), Gaps = 31/427 (7%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AI+ ++ DM+    M R++ GDVG GKT VAL A   A   G Q  ++ P 
Sbjct: 589 FEETPDQQAAIEAVIHDMTAGRPMDRLVCGDVGFGKTEVALRAAFVAAMGGKQVAVLVPT 648

Query: 331 GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
            +LA+QHY+ F  ++      IVE+      +  ++ AL  +A G   I+IGTH L Q  
Sbjct: 649 TLLAEQHYQNFADRFADWPLKIVELSRFRSAK-EQKAALAGLADGSVDIVIGTHRLVQPD 707

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++ +L LVI+DE+HRFGV+Q+ +L +      VL +TATPIPRTL ++  G  D S I 
Sbjct: 708 VEFARLGLVIIDEEHRFGVRQKEQLKRLRANVDVLTLTATPIPRTLAMSLEGLRDFSVIA 767

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  +KT + P N   I E + R    L  G + +++  ++E        ++ E+ 
Sbjct: 768 TAPNRRLSVKTFVTPQNNGVIREAVLR---ELKRGGQVFFLYNEVE-----TIENMREKL 819

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L     + + + HG+M + + E VM  F      +L+ +T+IE GID+ +A+ III  
Sbjct: 820 TELLPE--ARVQVAHGQMRERELEQVMRDFNQQRFNVLLCSTIIETGIDIPNANTIIIHR 877

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEED 624
           A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  ++  ED   GF +A  D
Sbjct: 878 ADRFGLAQLHQLRGRVGRSHHQAYAYLLTGEGMTKDAMKRLEAIQMMEDLGSGFYLAMHD 937

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHD---SLLEIARKDAKHILT--QDPDLTSVRGQ 679
           L+ R  GE+LG  QSG         E+H+   SL     K A   L   Q+PDL +  G 
Sbjct: 938 LEIRGAGEVLGEGQSG---------EMHEIGFSLYTEMLKSAVRALKKGQEPDLDAPLGV 988

Query: 680 SIRILLY 686
           +  + L+
Sbjct: 989 TTEVNLH 995


>gi|117924949|ref|YP_865566.1| transcription-repair coupling factor [Magnetococcus sp. MC-1]
 gi|117608705|gb|ABK44160.1| transcription-repair coupling factor [Magnetococcus sp. MC-1]
          Length = 1198

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 150/444 (33%), Positives = 236/444 (53%), Gaps = 22/444 (4%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            L+ ++ Q +   G+  +    + Q+     PF  T  Q  AI+ +L+DM+    M R++ 
Sbjct: 607  LVAIQAQREATQGVVYSGPDALYQEFASTFPFEETVDQAKAIEAVLEDMASPKAMDRLVC 666

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VAL A   A   G Q  I+ P  ILAQQHYE   K      I V+I++   
Sbjct: 667  GDVGFGKTEVALRATFRAAMDGKQVAILVPTTILAQQHYENFAKRLAGYPIKVDILSRFR 726

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                ++  +E + HG   +I+GTH L Q  +++  L L++VDE+ RFGV  + ++     
Sbjct: 727  TPKEQKATIEAVGHGTIDVIVGTHRLLQTDVKFKDLGLLVVDEEQRFGVSHKERIKNLRA 786

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               +L +TATPIPRTL +   G  DIS I   PA R  I+T+I   ++  +V E +   L
Sbjct: 787  TLDILTLTATPIPRTLNMAMAGVRDISIIASPPADRLAIRTIITHYDK-QQVREAILREL 845

Query: 480  SEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
              G + +++  Q++  E+K      +V           + + + HG+M +   E VM  F
Sbjct: 846  YRGGQVFYVHNQVQDIERKAQEIAELVPE---------ARVGVAHGQMRENQLEKVMMEF 896

Query: 538  KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL-- 595
               T  +L+ TT++E G+D+  A+ III+ A+ FGLAQLHQLRGRVGR +  +   +L  
Sbjct: 897  YRQTFNILVCTTIVENGVDIPTANTIIIDRADKFGLAQLHQLRGRVGRSKHRAYAYMLVP 956

Query: 596  YHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQP 649
            +   L+K++  RL  L++  +   GF++A  DL+ R  G ILG +QSG  K   F +   
Sbjct: 957  HLRRLTKHAEKRLEALESLGELGAGFMLATHDLEIRGAGNILGDEQSGQIKEVGFELYNQ 1016

Query: 650  ELHDSL--LEIARKDAKHILTQDP 671
             L +++  L+ AR   + + +  P
Sbjct: 1017 MLREAVVALQTARAQGRDLASTTP 1040


>gi|189423769|ref|YP_001950946.1| transcription-repair coupling factor [Geobacter lovleyi SZ]
 gi|189420028|gb|ACD94426.1| transcription-repair coupling factor [Geobacter lovleyi SZ]
          Length = 1165

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 218/379 (57%), Gaps = 15/379 (3%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             P+  T  Q SAI+D+L DM     M R++ GDVG GKT VAL A   AV  G Q  ++
Sbjct: 621 TFPWEETPDQLSAIQDVLGDMQHSRPMDRLVCGDVGYGKTEVALRAAFKAVLDGKQVALL 680

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQH+E      ++  + +E+++       ++ +LER+  G+  IIIGTH L Q
Sbjct: 681 VPTTILAQQHFETFSTRLKDYPVSIEMLSRFRSVKEQKISLERLKEGKLDIIIGTHRLLQ 740

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             + +  L L+IVDE+ RFGV+ + +L Q   +  ++ +TATPIPRTL L+ LG  D+S 
Sbjct: 741 KDVSFKDLGLLIVDEEQRFGVKDKERLKQYRASVDIMTLTATPIPRTLHLSMLGIRDLSI 800

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
           I   P  R+ IKTV+      D++I + +   L  G + +++       +  +   V ER
Sbjct: 801 IDTPPVDRQAIKTVV--ARDTDDLIRDAITRELERGGQVFYV-----HNRAHSIGIVAER 853

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              L     + I++ HG+M + + E VM +F +G   LL+ TT+IE G+D+  A+ ++++
Sbjct: 854 LRQLVPQ--ARISVAHGQMEEKELEKVMLTFMHGQSDLLLTTTIIESGLDIPRANTMLVD 911

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGL+QL+QLRGR+GR    S   LL      +++++  RL ++++  +   GF IA
Sbjct: 912 RADTFGLSQLYQLRGRIGRSTVKSYAYLLIPGQGSITQDARERLKIIQDISELGAGFRIA 971

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G++LG +QSG
Sbjct: 972 THDLELRGAGDMLGPRQSG 990


>gi|325202005|gb|ADY97459.1| transcription-repair coupling factor [Neisseria meningitidis
            M01-240149]
 gi|325208243|gb|ADZ03695.1| transcription-repair coupling factor [Neisseria meningitidis
            NZ-05/33]
          Length = 1227

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 672  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 731

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 732  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 790

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 791  THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 850

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 851  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 904

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 905  NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 962

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 963  TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1022

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1023 TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1078

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1079 ITTEIKLH 1086


>gi|313668421|ref|YP_004048705.1| transcription-repair coupling factor [Neisseria lactamica ST-640]
 gi|313005883|emb|CBN87339.1| transcription-repair coupling factor [Neisseria lactamica 020-06]
          Length = 1164

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 607  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 666

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 667  QVAVLAPTTLLVEQHAQNFADRFADFPVKVAGLSRFNNSKA-TKAALEGMADGTVDIVIG 725

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 726  THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLCANVDILTMTATPIPRTLSMALEG 785

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 786  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 839

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 840  NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIHNAN 897

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 898  TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 957

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 958  TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1013

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1014 ITTEIKLH 1021


>gi|146329097|ref|YP_001209598.1| transcription-repair coupling factor [Dichelobacter nodosus
           VCS1703A]
 gi|146232567|gb|ABQ13545.1| transcription-repair coupling factor [Dichelobacter nodosus
           VCS1703A]
          Length = 1117

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 151/380 (39%), Positives = 214/380 (56%), Gaps = 23/380 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q++AI  +L D+ Q   M RI+ GDVG GKT VA+ A  AAV AG Q  I+ P 
Sbjct: 565 YETTPDQQAAIDAVLNDLQQAKPMDRIVCGDVGFGKTEVAMRAAYAAVLAGYQCAIITPT 624

Query: 331 GILAQQH-YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
            +LA QH + F+ +++     I  I     P A +R  ++ +  G   I+IGTH L Q  
Sbjct: 625 TLLADQHVHNFLDRFSHIAVRIAAISRFKTP-AEQRAIVQSLRDGTIDIVIGTHRLLQKD 683

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I + +L LVIVDE+HRFGV+ +  L       ++L +TATPIPRTL L   G  D+S I 
Sbjct: 684 IAFARLGLVIVDEEHRFGVKHKEALKSLRADVNLLTLTATPIPRTLNLALSGLRDLSIIA 743

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             PAGR+ I+T+I   +   I+E  ER    L+ G + Y++          N  S ++R 
Sbjct: 744 TAPAGRQSIQTIISQYDPIVIEEACER---ELNRGGQIYFL---------HNDVSSIDRI 791

Query: 508 -NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             +L E    + IA+ HG++ +   E +M  F N    LL+A+T+IE GID+ +A+ III
Sbjct: 792 ARALSEQLPQARIAVAHGQLRERALEKIMQDFYNRHYDLLVASTIIESGIDIPNANTIII 851

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLI 620
             A+  GLAQLHQLRGRVGR    +   L+      L+K++  RLS     +    GFL+
Sbjct: 852 NRADKLGLAQLHQLRGRVGRSHHQAYAYLITPAWQTLNKDAQRRLSAFTELDSLGAGFLL 911

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A +DL+ R  GEILG +QSG
Sbjct: 912 ASQDLEIRGAGEILGDEQSG 931


>gi|212212451|ref|YP_002303387.1| transcription-repair coupling factor [Coxiella burnetii CbuG_Q212]
 gi|212010861|gb|ACJ18242.1| transcription-repair coupling factor [Coxiella burnetii CbuG_Q212]
          Length = 1157

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 143/379 (37%), Positives = 211/379 (55%), Gaps = 19/379 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q +AI D++ DMS K  M R++ GDVG GKT VA+ A   AV+   Q  ++ P
Sbjct: 612 PFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIAVQNNKQVAVLVP 671

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH+   +    +  + +  I+    Q  R++  + +A G+  IIIGTH L    
Sbjct: 672 TTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKIDIIIGTHKLLSKD 731

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+IVDE+HRFGV Q+ ++        +L +TATPIPRTL ++  G  D+S IT
Sbjct: 732 IRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNMSLSGIRDLSLIT 791

Query: 450 EKPAGRKPIKTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
             PA R  +KT +    P+  I E I R  +    G + Y++   +     +   +  E+
Sbjct: 792 TPPAKRLSVKTFVHDYSPV-LIREAILRENL---RGGQVYFLHNDV-----ATLAATAEK 842

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             ++     + +AI HG+M + D E VM  F +    LL+ TT+IE GID+  A+ III 
Sbjct: 843 LRTIIPE--ARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIIN 900

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RLS +   +D   GF +A
Sbjct: 901 RADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADAEKRLSAISQLDDLGVGFNLA 960

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  GE+LG++QSG
Sbjct: 961 THDLEIRGAGELLGVEQSG 979


>gi|294668965|ref|ZP_06734052.1| transcription-repair coupling factor [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309138|gb|EFE50381.1| transcription-repair coupling factor [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 1072

 Score =  227 bits (578), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 235/428 (54%), Gaps = 17/428 (3%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 517 QAFADGFGYEETEDQAAAISAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 576

Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q  ++AP  +L +QH + F+ ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 577 QVAVLAPTTLLVEQHAQNFVDRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 635

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 636 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 695

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 696 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 749

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 750 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 807

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
            III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 808 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 867

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 868 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 923

Query: 679 QSIRILLY 686
            +  I L+
Sbjct: 924 ITTEIKLH 931


>gi|87121321|ref|ZP_01077211.1| Transcription-repair coupling factor [Marinomonas sp. MED121]
 gi|86163478|gb|EAQ64753.1| Transcription-repair coupling factor [Marinomonas sp. MED121]
          Length = 1137

 Score =  227 bits (578), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 210/382 (54%), Gaps = 19/382 (4%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           +  PF  T  Q+ AI  ++QDM  K  M R++ GDVG GKT VA+ A   AV+ G Q  +
Sbjct: 589 QGFPFEETPDQQLAISAVIQDMVSKKPMDRLVCGDVGFGKTEVAMRAAFMAVQGGKQVAV 648

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  +LAQQHYE       +  I VE+++          A+ER+  G+A I++GTH L 
Sbjct: 649 LVPTTLLAQQHYENFCDRFADWPIEVELLSRFRSGKQTNAAIERLEQGKADIVVGTHKLI 708

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           Q  I+Y  L LVI+DE+HRFGV+Q+ +     +   +L +TATPIPRTL ++  G  D+S
Sbjct: 709 QGDIKYANLGLVIIDEEHRFGVKQKDQFKALRSEVDILTLTATPIPRTLNMSLSGIRDLS 768

Query: 447 KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            I   PA R  + T +   +   + E I R    L  G + Y++         ++ +++ 
Sbjct: 769 IIATPPAKRLSVNTFVKKKDNHTVKEAILR---ELHRGGQVYFL--------HNDVQTIA 817

Query: 505 ERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +    L E      I I HG+M + D E VM  F +    +L+ +T+IE GID+ +A+ I
Sbjct: 818 KAAEELAELIPEGRILIGHGQMRERDLEQVMSDFYHKRANILVCSTIIETGIDIPNANTI 877

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618
           II  A+ FGLAQLHQLRGRVGR    +   LL      ++K++  RL  ++  +    GF
Sbjct: 878 IINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEDRNVTKDAQKRLEAIQLADTLGAGF 937

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG  QSG
Sbjct: 938 TLATHDLEIRGTGELLGEGQSG 959


>gi|284799822|ref|ZP_05984959.2| transcription-repair coupling factor [Neisseria subflava NJ9703]
 gi|284796912|gb|EFC52259.1| transcription-repair coupling factor [Neisseria subflava NJ9703]
          Length = 1164

 Score =  227 bits (578), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 609  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 668

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 669  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 727

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 728  THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 787

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 788  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 841

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 842  NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 899

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 900  TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 959

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 960  TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1015

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1016 ITTEIKLH 1023


>gi|242241588|ref|ZP_04796033.1| transcription-repair coupling factor [Staphylococcus epidermidis
            W23144]
 gi|242234969|gb|EES37280.1| transcription-repair coupling factor [Staphylococcus epidermidis
            W23144]
          Length = 1166

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 151/414 (36%), Positives = 225/414 (54%), Gaps = 23/414 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 612  DFPYELTPDQSKSIDEIKGDMEKARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFL 671

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE + +  Q+  + +++++        R+  E +  G   I++GTH L  
Sbjct: 672  VPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLG 731

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 732  KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 791

Query: 448  ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P++T ++    N I E +ER    LS   + +++  +++        S+ E
Sbjct: 792  IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 840

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 841  KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 900

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
            IE A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 901  IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 959

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
             IA  DL  R  G +LG +Q G    +    +L+  +LE A  + + I  + PD
Sbjct: 960  KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEESPD 1011


>gi|262066822|ref|ZP_06026434.1| transcription-repair coupling factor [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379488|gb|EFE87006.1| transcription-repair coupling factor [Fusobacterium periodonticum
           ATCC 33693]
          Length = 978

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 141/377 (37%), Positives = 220/377 (58%), Gaps = 17/377 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF+ T  Q  AI+D+ +DM     M R++ GDVG GKT VA+ A   A+  G Q V++ P
Sbjct: 452 PFTETPGQLKAIEDVKRDMESGKVMDRLVCGDVGYGKTEVAIRAAFKAIMDGKQVVLLVP 511

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHYE   +  +N  I +EI++    +  + ++L++I +  A +IIGTH L  D 
Sbjct: 512 TTVLAEQHYERFSERFKNYPINIEILSRVQTKKEQEESLKKIENASADLIIGTHRLLSDD 571

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+Y  + L+I+DE+ +FGV+ + KL +      +L +TATPIPRTL L+ LG  D+S I 
Sbjct: 572 IKYKDIGLLIIDEEQKFGVKAKEKLKKLKGDIDILTLTATPIPRTLNLSLLGIRDLSVID 631

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P GR+ I+T  I  N+  I ++I  L  V  EG + ++I   ++  E K    R ++ 
Sbjct: 632 TSPEGRQKIQTEYIDNNKDLIRDII--LTEVSREG-QVFYIFNSVKRIEMKSKELRELLP 688

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            +          +  IHG+M   D +  + +F+NG   +LIATT+IE GID+ +A+ +II
Sbjct: 689 DY--------IKVDYIHGQMLARDIKRAIHNFENGNTDVLIATTIIENGIDIENANTMII 740

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEE 623
           E  E  GL+Q++QLRGR+GR  + S C +L +   ++N+  R   ++  ++  G  ++ E
Sbjct: 741 EGVEKLGLSQVYQLRGRIGRSNKKSYCYMLMNENKTRNAQKREESIREFDNLTGIDLSME 800

Query: 624 DLKQRKEGEILGIKQSG 640
           D K R  GEILG KQ G
Sbjct: 801 DSKIRGVGEILGEKQHG 817


>gi|323340106|ref|ZP_08080371.1| transcription-repair coupling factor [Lactobacillus ruminis ATCC
           25644]
 gi|323092483|gb|EFZ35090.1| transcription-repair coupling factor [Lactobacillus ruminis ATCC
           25644]
          Length = 1179

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 144/427 (33%), Positives = 235/427 (55%), Gaps = 15/427 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A ++  L  R++ +K    P +      ++     P++ T  Q 
Sbjct: 570 EWEKTKRKVASKLEDIADELVELYSRRESEKGHAFPKD--DSYQKEFEDAFPYTETPDQL 627

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + K+I  DM ++  M R+L GDVG GKT VAL A   AVE G Q   +AP  +L QQHY
Sbjct: 628 RSAKEIKLDMEKEKPMDRLLIGDVGYGKTEVALRAAFKAVEDGKQVAFIAPTTLLVQQHY 687

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +    +   + + +++        ++ L ++ +G+  II+GTH L    +++  L L+
Sbjct: 688 ETMLSRFEGFPVEIGVLSRFSTPRQVKETLLKLKNGEIDIIVGTHRLLSKDVKFADLGLL 747

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + KL +  T+  VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748 IIDEEQRFGVKHKEKLKELKTSVDVLTLTATPIPRTLNMSMLGVRDLSVIETAPLNRYPI 807

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T  +  N  D V   ++  +S G + +++  ++      +  +VVE  N++     + I
Sbjct: 808 QTYAMEQN-YDVVAAGIRREMSRGGQVFYLHNRVH-----DIETVVETLNTIVPE--ARI 859

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A +HG+MS+   E ++  F  G   +L+ TT+IE G+D+ + + + +E+A+  GLAQL+Q
Sbjct: 860 AYVHGQMSETQMEKILADFIAGEYDVLVTTTIIETGVDIPNVNTLFVEDADRMGLAQLYQ 919

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEI 633
           LRGRVGR   ++    +Y P   L+++   RL  +K+ TE   GF IA  DL  R  G +
Sbjct: 920 LRGRVGRSNRVAYAYFMYQPDKVLTEDGEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNM 979

Query: 634 LGIKQSG 640
           LG +Q G
Sbjct: 980 LGKQQHG 986


>gi|241760119|ref|ZP_04758217.1| transcription-repair coupling factor [Neisseria flavescens SK114]
 gi|241319573|gb|EER56003.1| transcription-repair coupling factor [Neisseria flavescens SK114]
          Length = 1134

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 579 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 638

Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 639 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 697

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 698 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 757

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 758 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 811

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 812 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 869

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
            III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 870 TIIINRADKFGLAQLHQLRGRVGRSHHQAYSYLLTPEYITKDAEKRLDAIAAADELGAGF 929

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 930 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 985

Query: 679 QSIRILLY 686
            +  I L+
Sbjct: 986 ITTEIKLH 993


>gi|319399660|gb|EFV87914.1| transcription-repair coupling factor [Staphylococcus epidermidis
            FRI909]
          Length = 1166

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 151/414 (36%), Positives = 225/414 (54%), Gaps = 23/414 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 612  DFPYELTPDQSKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFL 671

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE + +  Q+  + +++++        R+  E +  G   I++GTH L  
Sbjct: 672  VPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLG 731

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 732  KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 791

Query: 448  ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P++T ++    N I E +ER    LS   + +++  +++        S+ E
Sbjct: 792  IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 840

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 841  KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 900

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
            IE A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 901  IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 959

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
             IA  DL  R  G +LG +Q G    +    +L+  +LE A  + + I  + PD
Sbjct: 960  KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEESPD 1011


>gi|291550022|emb|CBL26284.1| transcription-repair coupling factor [Ruminococcus torques L2-14]
          Length = 1118

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 140/372 (37%), Positives = 217/372 (58%), Gaps = 17/372 (4%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q  AI+D  +DM     M R++ GDVG GKT +A+ A   AV+ G Q V + P  ILAQ
Sbjct: 570 DQLRAIEDTKKDMESTKIMDRLICGDVGYGKTEIAIRAAFKAVQEGKQVVYLVPTTILAQ 629

Query: 336 QHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           QHY  FI+++ ++  + V++++    QA ++K +E +  G   I+IGTH +    I Y  
Sbjct: 630 QHYNTFIQRF-KDFPVRVDLMSRFRTQAQQKKTVEDLKKGLVDIVIGTHRVLSKDIGYKD 688

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ +G  D+S + E P  
Sbjct: 689 LGLLIIDEEQRFGVTHKEKIKKLRENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPMD 748

Query: 455 RKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           R PI+T ++  N  DE++ E ++  L+ G + Y++  ++E     N   +  R   L   
Sbjct: 749 RMPIQTYVMEYN--DEMVREAIERELARGGQVYYVYNRVE-----NIADLALRVQKLVPD 801

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S A  HG+M++   E +M  F NG   +L++TT+IE G+D+ +A+ +II++A+ FGL
Sbjct: 802 ARVSYA--HGQMNEHQLEDIMYDFINGDIDVLVSTTIIETGLDIANANTMIIQDADRFGL 859

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           +QL+QLRGRVGR   ++   LLY     L + +  RL+ ++   D   GF IA  DL+ R
Sbjct: 860 SQLYQLRGRVGRSNRMAYAFLLYQRDKMLKEVAEKRLAAIREFTDLGSGFKIAMRDLEIR 919

Query: 629 KEGEILGIKQSG 640
             G +LG  QSG
Sbjct: 920 GAGNLLGESQSG 931


>gi|308389402|gb|ADO31722.1| transcription-repair coupling factor [Neisseria meningitidis
            alpha710]
          Length = 1227

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 672  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 731

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 732  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 790

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 791  THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 850

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 851  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 904

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 905  NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 962

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 963  TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1022

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1023 TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1078

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1079 ITTEIKLH 1086


>gi|319638036|ref|ZP_07992800.1| transcription-repair coupling factor [Neisseria mucosa C102]
 gi|317400681|gb|EFV81338.1| transcription-repair coupling factor [Neisseria mucosa C102]
          Length = 1134

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 150/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 579 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 638

Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 639 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 697

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH L QD +++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 698 THKLVQDDVKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 757

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 758 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 811

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 812 NMRERLEALLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 869

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
            III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 870 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 929

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 930 TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 985

Query: 679 QSIRILLY 686
            +  I L+
Sbjct: 986 ITTEIKLH 993


>gi|302763495|ref|XP_002965169.1| hypothetical protein SELMODRAFT_83786 [Selaginella moellendorffii]
 gi|300167402|gb|EFJ34007.1| hypothetical protein SELMODRAFT_83786 [Selaginella moellendorffii]
          Length = 693

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 218/385 (56%), Gaps = 16/385 (4%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQ-KNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           K     P++PT  Q  A  D+ +D++  +  M R++ GDVG GKT VA+ A+  AV A  
Sbjct: 131 KFAGKFPYTPTPDQIKAFLDVERDLTDAETPMDRLICGDVGFGKTEVAMRAIFYAVSAKK 190

Query: 323 QAVIMAPIGILAQQHYEFIK-KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP  +LA+QH+E IK ++     I V +++       RR  +  I  G  +I +G
Sbjct: 191 QVMVLAPTTVLAKQHHESIKERFANFPDIKVALLSRFQNNVDRRAVIAGINDGVVNIAVG 250

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH+L  ++IQY  + L++VDE+ RFGV Q+ K++   T   +L ++ATPIPRTL +   G
Sbjct: 251 THSLLGNNIQYENVGLLVVDEEQRFGVAQKEKISTLKTTVDILTLSATPIPRTLHMALSG 310

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D S +T  P  R+PIKT +   ++ D V + +K  L    + +++ P+I    + N  
Sbjct: 311 FRDASLMTTPPPERRPIKTHVCVYSQ-DMVKDAIKAELDRRGQVFYVVPRI----QGNME 365

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           S  ++   L      SIA  HG+    + E+ M  F      +L+ T +IE G+D+   +
Sbjct: 366 STEKKLKLLVPGVQVSIA--HGKKCATELEATMTKFTEKGTSILLCTNIIESGLDIPTVN 423

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNT---E 615
            II+EN + FGLAQ++QLRGRVGR ++++   +L HPP   LS ++  RLS L++     
Sbjct: 424 TIIVENVQMFGLAQIYQLRGRVGRADKVAHAYML-HPPKDFLSSDALERLSALEDCCALG 482

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSG 640
            GF +AE D+  R  G I G KQSG
Sbjct: 483 QGFQLAERDMAIRGIGSIFGEKQSG 507


>gi|125622895|ref|YP_001031378.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124491703|emb|CAL96622.1| Transcription-repair coupling factor (TRCF) [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300069633|gb|ADJ59033.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 1180

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 142/437 (32%), Positives = 233/437 (53%), Gaps = 23/437 (5%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  W           E ++  +  L   +Q KK  G   + +    ++      +  
Sbjct: 570 KLNDGRWRKTMSSVSKQVEDISDDLIKLYAERQAKK--GFAFSPDDASQEEFDSGFSYVE 627

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I +I  DM  +  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  +L
Sbjct: 628 TEDQIRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQVAVLVPTTVL 687

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH+    +   N  + VE+++    +  + + L ++  G+  +IIGTH L    ++++
Sbjct: 688 AEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGRVDLIIGTHRLLSKDVEFF 747

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ + +L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 748 DLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 807

Query: 454 GRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNS 509
            R P++T ++  N   + + I R    +S G + Y++  +++  E+K S    ++     
Sbjct: 808 NRYPVQTYVMETNYGVVRDAILR---EISRGGQVYYVYNRVDTIEQKVSQLEELIPE--- 861

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 + I  IHG+M+++  E+ + +F  G   +L+ATT+IE G+D+ +++ + IENA+
Sbjct: 862 ------ARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNSNTLFIENAD 915

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEED 624
             GL+QL+QLRGRVGR   ++    +Y P   LS+ S  RL  +K  TE   GF IA  D
Sbjct: 916 MMGLSQLYQLRGRVGRSNRVAYAYFMYRPEKILSEVSEKRLEAIKGFTELGSGFKIAMRD 975

Query: 625 LKQRKEGEILGIKQSGM 641
           L  R  G +LG +QSG 
Sbjct: 976 LSIRGAGNLLGSEQSGF 992


>gi|261377774|ref|ZP_05982347.1| transcription-repair coupling factor [Neisseria cinerea ATCC 14685]
 gi|269146063|gb|EEZ72481.1| transcription-repair coupling factor [Neisseria cinerea ATCC 14685]
          Length = 1134

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 579 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 638

Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 639 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 697

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 698 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 757

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 758 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 811

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 812 NMRERLKTLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 869

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
            III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 870 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 929

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 930 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 985

Query: 679 QSIRILLY 686
            +  I L+
Sbjct: 986 ITTEIKLH 993


>gi|197302598|ref|ZP_03167653.1| hypothetical protein RUMLAC_01327 [Ruminococcus lactaris ATCC
           29176]
 gi|197298496|gb|EDY33041.1| hypothetical protein RUMLAC_01327 [Ruminococcus lactaris ATCC
           29176]
          Length = 1117

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 213/371 (57%), Gaps = 15/371 (4%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q  AI+D  +DM     M R++ GDVG GKT VA+ A   AV+ G Q V + P  ILAQ
Sbjct: 571 DQLRAIEDTKKDMESTKVMDRLICGDVGYGKTEVAIRAAFKAVQDGKQVVYLVPTTILAQ 630

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY    +  ++  + ++++      A ++K +E +  G   I+IGTH +    + Y  L
Sbjct: 631 QHYNTFIQRLKDFPVRIDLLCRFRTPAQQKKTIEDLKKGLVDIVIGTHRVLSKDVTYKDL 690

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L+I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ +G  D+S + E P  R
Sbjct: 691 GLLIIDEEQRFGVTHKEKIKKMRENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDR 750

Query: 456 KPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            PI+T ++  N  DE+I E ++  LS G + Y++  ++E     +   V  R   L    
Sbjct: 751 MPIQTYVMEFN--DEMIREAIERELSRGGQVYYVYNRVE-----DIADVAGRVQKLVP-- 801

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            +S++  HG+MS+ + E +M  F NG   +L++TT+IE G+D+ +A+ +II++A+ FGL+
Sbjct: 802 GASVSFAHGQMSERELEDIMYDFINGEIDVLVSTTIIETGLDIANANTMIIQDADRFGLS 861

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QL+QLRGRVGR   ++   LLY     L + +  RL+ ++   D   G  IA  DL+ R 
Sbjct: 862 QLYQLRGRVGRSSRMAYAFLLYRRDKLLKEVAEKRLAAIREFTDLGSGIKIAMRDLEIRG 921

Query: 630 EGEILGIKQSG 640
            G +LG  QSG
Sbjct: 922 AGNLLGEAQSG 932


>gi|282875433|ref|ZP_06284305.1| transcription-repair coupling factor [Staphylococcus epidermidis
            SK135]
 gi|281295790|gb|EFA88312.1| transcription-repair coupling factor [Staphylococcus epidermidis
            SK135]
          Length = 1169

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 151/414 (36%), Positives = 225/414 (54%), Gaps = 23/414 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 615  DFPYELTPDQSKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFL 674

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE + +  Q+  + +++++        R+  E +  G   I++GTH L  
Sbjct: 675  VPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLG 734

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 735  KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 794

Query: 448  ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P++T ++    N I E +ER    LS   + +++  +++        S+ E
Sbjct: 795  IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 843

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 844  KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 903

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
            IE A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 904  IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 962

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
             IA  DL  R  G +LG +Q G    +    +L+  +LE A  + + I  + PD
Sbjct: 963  KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEESPD 1014


>gi|251809809|ref|ZP_04824282.1| transcription-repair coupling factor [Staphylococcus epidermidis
            BCM-HMP0060]
 gi|251806677|gb|EES59334.1| transcription-repair coupling factor [Staphylococcus epidermidis
            BCM-HMP0060]
          Length = 1166

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 151/414 (36%), Positives = 225/414 (54%), Gaps = 23/414 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 612  DFPYELTPDQSKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFL 671

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE + +  Q+  + +++++        R+  E +  G   I++GTH L  
Sbjct: 672  VPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLG 731

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 732  KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 791

Query: 448  ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P++T ++    N I E +ER    LS   + +++  +++        S+ E
Sbjct: 792  IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 840

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 841  KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 900

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
            IE A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 901  IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 959

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
             IA  DL  R  G +LG +Q G    +    +L+  +LE A  + + I  + PD
Sbjct: 960  KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEESPD 1011


>gi|209525598|ref|ZP_03274136.1| transcription-repair coupling factor [Arthrospira maxima CS-328]
 gi|209493931|gb|EDZ94248.1| transcription-repair coupling factor [Arthrospira maxima CS-328]
          Length = 1167

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 139/414 (33%), Positives = 227/414 (54%), Gaps = 21/414 (5%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + LL +  +  ++ G     +    Q++  + P+ PT  Q    +D+ +DM     M R+
Sbjct: 584 VDLLKLYAERSQKTGFSYPQDTPWQQEMEDSFPYQPTPDQLKCSQDVKRDMESDRPMDRL 643

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA+ A+  AV AG Q   +AP  IL QQHY  +K+      I + ++  
Sbjct: 644 VCGDVGFGKTEVAIRAIFKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYPIEIGLLNR 703

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               + ++   +++  G+  II+GTH++    I++  L L++VDE+ RFGV Q+ K+   
Sbjct: 704 FRSASEKKLIQQKLTTGEIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKAL 763

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            T   VL +TATPIPRTL +   G  ++S IT  P  R+PI+T + P+N+ + +   +  
Sbjct: 764 KTHVDVLTLTATPIPRTLYMALSGIREMSLITTPPPSRRPIQTHLGPLNQ-ETIRAAICQ 822

Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            L  G + +++ P+IE  E+K +  R +V          ++ +AI HG+M   + ES+M 
Sbjct: 823 ELDRGGQVFYVVPRIEGIEEKSAAIREMVP---------SARLAIAHGQMEAGELESIML 873

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +F  G   +L+ TT+IE G+D+   + I++E+A  FGL QL+QLRGRVGR    +   L 
Sbjct: 874 TFSAGEADILVCTTIIESGLDIPRVNTILVEDAHKFGLGQLYQLRGRVGRAGVQAHAWLF 933

Query: 596 Y------HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           Y         L++++  RL  +K       G+ +A  DL+ R  G+ILG +QSG
Sbjct: 934 YPVKGDGQAALTEDAVKRLRAIKEFTQLGSGYQLAMRDLEIRGAGDILGAQQSG 987


>gi|329733010|gb|EGG69349.1| transcription-repair coupling factor [Staphylococcus epidermidis
            VCU028]
          Length = 1166

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 151/414 (36%), Positives = 225/414 (54%), Gaps = 23/414 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 612  DFPYELTPDQSKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFL 671

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE + +  Q+  + +++++        R+  E +  G   I++GTH L  
Sbjct: 672  VPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLG 731

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 732  KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 791

Query: 448  ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P++T ++    N I E +ER    LS   + +++  +++        S+ E
Sbjct: 792  IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 840

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 841  KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 900

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
            IE A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 901  IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 959

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
             IA  DL  R  G +LG +Q G    +    +L+  +LE A  + + I  + PD
Sbjct: 960  KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEESPD 1011


>gi|329723937|gb|EGG60462.1| transcription-repair coupling factor [Staphylococcus epidermidis
            VCU144]
          Length = 1166

 Score =  226 bits (577), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 151/414 (36%), Positives = 225/414 (54%), Gaps = 23/414 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 612  DFPYELTPDQSKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFL 671

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE + +  Q+  + +++++        R+  E +  G   I++GTH L  
Sbjct: 672  VPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLG 731

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 732  KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSV 791

Query: 448  ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P++T ++    N I E +ER    LS   + +++  +++        S+ E
Sbjct: 792  IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 840

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 841  KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 900

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
            IE A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 901  IEEADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLNETAEERLQAIKEFTELGSGF 959

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
             IA  DL  R  G +LG +Q G    +    +L+  +LE A  + + I  + PD
Sbjct: 960  KIAMRDLNIRGAGNLLGKQQHGFIDSV--GFDLYSQMLEEAVNEKRGIKEESPD 1011


>gi|226943575|ref|YP_002798648.1| transcription-repair coupling factor [Azotobacter vinelandii DJ]
 gi|226718502|gb|ACO77673.1| transcription-repair coupling factor [Azotobacter vinelandii DJ]
          Length = 1149

 Score =  226 bits (577), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 140/378 (37%), Positives = 210/378 (55%), Gaps = 13/378 (3%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q++AI  +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 598 SFPFEETPDQQAAIDAVRTDMLAPRPMDRLICGDVGFGKTEVAMRAAFIAVHSGRQVAVL 657

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY   +    +  + VE+++          A+  +A G+  I+IGTH L Q
Sbjct: 658 VPTTLLAQQHYNSFRDRFADWPVKVEVMSRFKSAKEVEGAIAALAEGKIDIVIGTHKLLQ 717

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D + +  L L I+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 718 DDVSFKNLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSI 777

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I   PA R  ++T ++   +   + E L   L  G + Y++  ++ +  E   R + E  
Sbjct: 778 IATPPARRLSVRTFVME-QQNTLIREALLRELLRGGQVYYLHNEV-KTIEKCARELAELV 835

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IAI HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+IE 
Sbjct: 836 PE------ARIAIGHGQMRERELEQVMGDFYHKRFNVLVASTIIETGIDVPSANTIVIER 889

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622
           A+ FGLAQLHQLRGRVGR    +   LL  P   +++++  RL  +   +D   GF++A 
Sbjct: 890 ADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQMTEDAQKRLEAIAGAQDLGAGFVLAT 949

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  GE+LG  QSG
Sbjct: 950 HDLEIRGAGELLGEGQSG 967


>gi|298369031|ref|ZP_06980349.1| transcription-repair coupling factor [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298283034|gb|EFI24521.1| transcription-repair coupling factor [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 723

 Score =  226 bits (577), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 152/428 (35%), Positives = 235/428 (54%), Gaps = 17/428 (3%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 164 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 223

Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q  ++AP  +L +QH + F  ++T     +  +   N  +A  + ALE +A G   I+IG
Sbjct: 224 QVAVLAPTTLLVEQHAQNFADRFTDFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 282

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 283 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 342

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 343 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 396

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 397 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 454

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
            III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 455 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 514

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 515 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 570

Query: 679 QSIRILLY 686
            +  I L+
Sbjct: 571 ITTEIKLH 578


>gi|325136213|gb|EGC58821.1| transcription-repair coupling factor [Neisseria meningitidis M0579]
          Length = 1296

 Score =  226 bits (576), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 741  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 800

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 801  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 859

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 860  THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 919

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 920  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 973

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 974  NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1031

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 1032 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1091

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1092 TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1147

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1148 ITTEIKLH 1155


>gi|239637489|ref|ZP_04678463.1| transcription-repair coupling factor [Staphylococcus warneri L37603]
 gi|239596934|gb|EEQ79457.1| transcription-repair coupling factor [Staphylococcus warneri L37603]
          Length = 1169

 Score =  226 bits (576), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 155/446 (34%), Positives = 238/446 (53%), Gaps = 23/446 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            L+ + KQ +  +G     + +       + P+  T  Q  +I++I  DM ++  M R+L 
Sbjct: 587  LIDLYKQREMSVGYQFGPDTEEQSTFELDFPYELTPDQSKSIEEIKGDMERERPMDRLLC 646

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV  G Q   + P  ILAQQHYE + +  Q+  + +++I+   
Sbjct: 647  GDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLISRFR 706

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                 ++  E +  G   I++GTH L    I Y  L L+IVDE+ RFGV+ + ++     
Sbjct: 707  STKEVKETKEGLKSGYVDIVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTLKN 766

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP--INRIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++    N I E +ER   
Sbjct: 767  NVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALER--- 823

Query: 478  VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDS 536
             LS   + +++  +++        S+ E+   L      ++IA+ HG+M++ D E  M S
Sbjct: 824  ELSRDGQVFYLYNKVQ--------SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLS 875

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F N    +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+QLRGRVGR   I     L 
Sbjct: 876  FINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFL- 934

Query: 597  HPP---LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            HP    L++ +  RL  +K  TE   GF IA  DL  R  G +LG +Q G    +    +
Sbjct: 935  HPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSV--GFD 992

Query: 651  LHDSLLEIARKDAKHILTQDPDLTSV 676
            L+  +LE A  + + I  + PD+  V
Sbjct: 993  LYSQMLEEAVNEKRGIKEETPDVPDV 1018


>gi|325132515|gb|EGC55208.1| transcription-repair coupling factor [Neisseria meningitidis M6190]
          Length = 1232

 Score =  226 bits (576), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 235/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 677  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 736

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 737  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGLADGTVDIVIG 795

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD+I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 796  THKLVQDNIRFKSLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 855

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 856  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 909

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 910  NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 967

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 968  TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1027

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1028 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1083

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1084 ITTEIKLH 1091


>gi|148657760|ref|YP_001277965.1| transcription-repair coupling factor [Roseiflexus sp. RS-1]
 gi|148569870|gb|ABQ92015.1| transcription-repair coupling factor [Roseiflexus sp. RS-1]
          Length = 1265

 Score =  226 bits (576), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 148/429 (34%), Positives = 234/429 (54%), Gaps = 19/429 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+  A  + LA ++  L  ++Q  +  G   + + +  +++  + P+  T  Q 
Sbjct: 616  DWERAKRKARAAVQDLAEELITLYAQRQLAE--GHAFSPDTEWQRELEASFPYVETPDQL 673

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI D+ +DM Q   M R++ GDVG GKT VAL A   AV+ G Q  ++AP  +L QQHY
Sbjct: 674  KAIIDVKRDMEQPQPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAVLAPTTVLVQQHY 733

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + +++I+       + + ++R+A G+  IIIGTH L    + +  L L+
Sbjct: 734  DTFSRRMAAFPVRIDMISRFRSAKEQSEIVQRLARGEIDIIIGTHRLLSKDVVFKDLGLL 793

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + ++ Q  T   VL +TATPIPRTL +   G  D+S I   P  R PI
Sbjct: 794  VIDEEQRFGVRHKERIKQLRTNVDVLTLTATPIPRTLHMALAGIRDLSIIDTPPEDRIPI 853

Query: 459  KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            KT ++P +   I E I R    L  G + Y++  +++     +   V +R   L     +
Sbjct: 854  KTYVLPYDERLIREAILR---ELDRGGQVYFVHNRVQ-----SIYYVADRLRRLVPE--A 903

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             IA+ HG++ +   E VM  F  G   +L+ TT+IE G+DV +A+ III++A +FGLAQL
Sbjct: 904  RIAVGHGQLEEHQLERVMLDFFTGRDDVLVCTTIIESGLDVPNANTIIIDDATNFGLAQL 963

Query: 577  HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            +QLRGRVGR  + +   L Y    P +  +  RL  ++   +   GF IA  DL+ R  G
Sbjct: 964  YQLRGRVGRSTQRAYAYLFYKSERPSTPEAQERLRAIQEATELGAGFRIAMRDLEIRGAG 1023

Query: 632  EILGIKQSG 640
             +LG +QSG
Sbjct: 1024 NLLGAEQSG 1032


>gi|51244134|ref|YP_064018.1| transcription-repair coupling factor [Desulfotalea psychrophila
           LSv54]
 gi|50875171|emb|CAG35011.1| related to transcription-repair coupling factor [Desulfotalea
           psychrophila LSv54]
          Length = 1184

 Score =  226 bits (576), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 142/394 (36%), Positives = 220/394 (55%), Gaps = 27/394 (6%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G++ Q++  + PF  T  Q +AI  +L D++  N M R++ GDVG GKT VA+      V
Sbjct: 612 GQLYQELEESFPFDETAGQLAAINSVLDDLTDANPMDRLVCGDVGYGKTEVAIRGAFKVV 671

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           E G QA I+ P  +LA+QH +  ++  QN  + +E +        +R+ ++ +A G+  I
Sbjct: 672 EDGAQAAILVPTTVLAEQHLKTFRERLQNFPLRIECLNRFRTAKEQREIVKDLAAGKIDI 731

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           +IGTH L    +Q+  L L+I+DE+HRFGV  + +L +      +L +TATPIPRTL ++
Sbjct: 732 VIGTHRLLSKDVQFKDLGLLIIDEEHRFGVAHKERLRKMRAEVDILTLTATPIPRTLQMS 791

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            L   D+S I+  P  R+P+KT          V E   +V+ E      I  ++  K ++
Sbjct: 792 LLSIRDLSVISSPPEQRRPVKTF---------VAEDDDLVIKEA-----ISRELRRKGQT 837

Query: 499 NF-----RSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            F     +S+ +  N + +    + IA+ HG+M   + E++M SF N    +L+ATT+IE
Sbjct: 838 FFVHNRVKSIYQIANKIEKLVPDARIAVAHGQMDTKELENIMVSFVNKEVDVLVATTIIE 897

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLS 609
            G+D+  A+ +II  A++ GLA+++QLRGRVGR    S   LL  P L   SK+S  RL 
Sbjct: 898 SGLDIPSANTMIINRADNLGLAEMYQLRGRVGRSSTQSFAYLLV-PSLDSISKDSRERLR 956

Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            L    +   GF +A  DL+ R  G +LGI QSG
Sbjct: 957 ALMECNELGGGFKLAMNDLQIRGGGNLLGISQSG 990


>gi|316984071|gb|EFV63049.1| transcription-repair coupling factor [Neisseria meningitidis H44/76]
          Length = 1235

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 680  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 739

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 740  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 798

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 799  THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 858

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 859  LRDFSLITTAPSRRLSVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 912

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 913  NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 970

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 971  TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1030

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1031 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1086

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1087 ITTEIKLH 1094


>gi|325266091|ref|ZP_08132777.1| transcription-repair coupling factor [Kingella denitrificans ATCC
            33394]
 gi|324982729|gb|EGC18355.1| transcription-repair coupling factor [Kingella denitrificans ATCC
            33394]
          Length = 1258

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 152/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 698  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 757

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 758  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 816

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      VL MTATPIPRTL +   G
Sbjct: 817  THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDVLTMTATPIPRTLSMALEG 876

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 877  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 930

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 931  NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 988

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 989  TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1048

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1049 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1104

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1105 ITTEIKLH 1112


>gi|260772487|ref|ZP_05881403.1| transcription-repair coupling factor [Vibrio metschnikovii CIP
           69.14]
 gi|260611626|gb|EEX36829.1| transcription-repair coupling factor [Vibrio metschnikovii CIP
           69.14]
          Length = 978

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 138/382 (36%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A     +   Q  I+
Sbjct: 424 TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVCTDNNKQVAIL 483

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    N  I VE+++       +++ ++ +A G+  I++GTH L  
Sbjct: 484 VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQIMQDVAEGKVDIVVGTHKLLS 543

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             + +  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 544 SDLIFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 603

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  IKT    + + ++ + R  V+  +  G + Y++  Q+E  EK  ++  ++
Sbjct: 604 IATPPARRLAIKTF---VRQHEDSVVRESVLREIMRGGQVYFLHNQVESIEKVAADLEAL 660

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +           + + + HG++ + + E +M+ F +    +L+ TT+IE GIDV  A+ I
Sbjct: 661 IPE---------ARVTVAHGQLRERELEQIMNDFYHQRYNVLVCTTIIETGIDVPTANTI 711

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GF 618
           II  A+  GLAQLHQLRGRVGR    +   LL  HP  ++K++  RL  + + ED   GF
Sbjct: 712 IINRADTLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLEAIASLEDLGAGF 771

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 772 TLATHDLEIRGAGELLGDEQSG 793


>gi|76797973|ref|ZP_00780232.1| transcription-repair coupling factor [Streptococcus agalactiae
           18RS21]
 gi|76586653|gb|EAO63152.1| transcription-repair coupling factor [Streptococcus agalactiae
           18RS21]
          Length = 727

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 164/473 (34%), Positives = 256/473 (54%), Gaps = 31/473 (6%)

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
           N +++ R  K  +  +   E +A D+LL     L   R Q +   G   + +  +     
Sbjct: 116 NTLNDGRFKKAKQRVAKQVEDIA-DDLLK----LYAERSQLQ---GFAFSPDDNMQNDFD 167

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            +  +  T+ Q  +IK+I QDM     M R+L GDVG GKT VA+ A   AV    Q V+
Sbjct: 168 NDFAYVETEDQLRSIKEIKQDMEGNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVV 227

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  +LAQQH+E  K+   N  + V++++    +  +   L+R++ GQ  IIIGTH L 
Sbjct: 228 LVPTTVLAQQHFENFKERFSNYPVTVDVLSRFRSKKEQTDTLKRLSKGQVDIIIGTHRLL 287

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              + +  L L+++DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S
Sbjct: 288 SQDVVFSDLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLS 347

Query: 447 KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            I   P  R P++T ++  N   + E I R    +  G + +++  +++        ++ 
Sbjct: 348 VIETPPTNRYPVQTYVLETNPGLVREAIIR---EIDRGGQVFYVYNKVD--------TID 396

Query: 505 ERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           ++ + L E    +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + +
Sbjct: 397 QKVSELQELVPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTL 456

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGF 618
            +ENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   GF
Sbjct: 457 FVENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEISEKRLDAIKGFTELGSGF 516

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
            IA  DL  R  G ILG  QSG    +    E++  LLE  IA K  K ++ Q
Sbjct: 517 KIAMRDLSIRGAGNILGASQSGFIDSV--GFEMYSQLLEQAIATKQGKSLIRQ 567


>gi|291569965|dbj|BAI92237.1| transcriptional-repair coupling factor [Arthrospira platensis
           NIES-39]
          Length = 1167

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 139/414 (33%), Positives = 226/414 (54%), Gaps = 21/414 (5%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + LL +  +  ++ G     +    Q++  + P+ PT  Q    +D+ +DM     M R+
Sbjct: 584 VDLLKLYAERSQKTGFSYPHDTPWQQEMEDSFPYKPTPDQLKCSQDVKRDMESDRPMDRL 643

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA+ A+  AV  G Q   +AP  IL QQHY  +K+      I + ++  
Sbjct: 644 VCGDVGFGKTEVAIRAIFKAVTGGKQVAFLAPTTILTQQHYHTLKERFAPYPIEIGLLNR 703

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               + ++   +++  G+  II+GTH++    I++  L L++VDE+ RFGV Q+ K+   
Sbjct: 704 FRSASEKKLIQQKLITGEIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKAL 763

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            T   VL +TATPIPRTL +   G  ++S IT  P  R+PIKT + P+N+ + +   +  
Sbjct: 764 KTHVDVLTLTATPIPRTLYMALSGIREMSLITTPPPSRRPIKTHLGPLNQ-ETIRAAICQ 822

Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            L  G + +++ P+IE  E+K +  R +V          ++ +AI HG+M   + ES+M 
Sbjct: 823 ELDRGGQVFYVVPRIEGIEEKSAAIREMVP---------SARLAIAHGQMEAGELESIML 873

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +F  G   +L+ TT+IE G+D+   + I++E+A  FGL QL+QLRGRVGR    +   L 
Sbjct: 874 TFSAGEADILVCTTIIESGLDIPRVNTILVEDAHKFGLGQLYQLRGRVGRAGAQAHAWLF 933

Query: 596 Y------HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           Y         L++++  RL  +K       G+ +A  DL+ R  G+ILG +QSG
Sbjct: 934 YPIKGDGQAALTEDAVKRLRAIKEFTQLGSGYQLAMRDLEIRGAGDILGAQQSG 987


>gi|309379212|emb|CBX22169.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 1164

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 607  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 666

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 667  QVAVLAPTTLLVEQHAQNFADRFADFPVKVAGLSRFNNSKA-TKAALEGMADGTVDIVIG 725

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 726  THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 785

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 786  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 839

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 840  NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 897

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 898  TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 957

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 958  TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1013

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1014 ITTEIKLH 1021


>gi|254302466|ref|ZP_04969824.1| transcription-repair coupling factor (TRCF) [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148322658|gb|EDK87908.1| transcription-repair coupling factor (TRCF) [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 981

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 223/375 (59%), Gaps = 13/375 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF+ T +Q  AI+D+ +DM     M R++ GDVG GKT VA+     AV    Q +++ P
Sbjct: 452 PFTETPAQLKAIEDVKRDMESGKVMDRLICGDVGFGKTEVAIRTTFKAVMDSKQVILLVP 511

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHYE   +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D 
Sbjct: 512 TTVLAEQHYERFSERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDD 571

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  + L+I+DE+ +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I 
Sbjct: 572 IKFKDVGLLIIDEEQKFGVKAKEKLKKIKGDLDVLTLTATPIPRTLNLSLLGIRDLSVID 631

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P GR+ I+T  I  N+  I ++I  L  +  EG + ++I   + ++ ES  + + E  
Sbjct: 632 TSPEGRQKIQTEYIDNNKNLIRDII--LSEISREG-QVFYIFNSV-KRMESKVKEIRE-- 685

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L E+    ++ IHG+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +IIE 
Sbjct: 686 -LLPEYI--KVSYIHGQMLPRDIKKNIQEFENGNVDVLVATTIIENGIDIENANTMIIEG 742

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDL 625
            E  GL+Q++QLRGR+GR  + S C +L +   +KN+  R   ++  ++  G  +A ED 
Sbjct: 743 VEKLGLSQVYQLRGRIGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGIDLAMEDS 802

Query: 626 KQRKEGEILGIKQSG 640
           K R  GEILG KQ G
Sbjct: 803 KIRGVGEILGEKQHG 817


>gi|325130353|gb|EGC53119.1| transcription-repair coupling factor [Neisseria meningitidis
            OX99.30304]
          Length = 1292

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 235/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 737  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 796

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 797  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGLADGTVDIVIG 855

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 856  THKLVQDDIRFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 915

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 916  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 969

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 970  NMRERLKTLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1027

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL+ +   ++   GF
Sbjct: 1028 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLNAIAAADELGAGF 1087

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1088 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1143

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1144 ITTEIKLH 1151


>gi|54309559|ref|YP_130579.1| putative transcription-repair coupling factor [Photobacterium
           profundum SS9]
 gi|46913995|emb|CAG20777.1| putative transcription-repair coupling factor [Photobacterium
           profundum SS9]
          Length = 1151

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 139/382 (36%), Positives = 210/382 (54%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI  +L DM +   M R++ GDVG GKT VA+ A   A++   Q  ++
Sbjct: 600 GFPFEETHDQALAINSVLSDMCKPRAMDRLVCGDVGFGKTEVAMRAAFVAIDNNKQVTVL 659

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +    NT + VE+++       +++ +     G+  I+IGTH L  
Sbjct: 660 VPTTLLAQQHFENFRDRFANTAVRVEVLSRFKTAKEQKQIMLDAEEGKIDILIGTHKLLN 719

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
            S++Y+ L L++VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 720 ASVKYHDLGLLVVDEEHRFGVRQKEKIKAIRADIDILTLTATPIPRTLNMAMSGMRDLSI 779

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  IKT    +   D+ I R  V+  +  G + Y++  +++  EK       +
Sbjct: 780 IATPPARRLAIKTF---VREKDDAIIREAVLREIMRGGQVYFLHNEVDSIEKTTEELAKL 836

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +           + I   HG+M + D E VM  F +    LL+ TT+IE GID+  A+ I
Sbjct: 837 IPE---------ARITFAHGQMRERDLEKVMGDFYHQRFNLLVCTTIIETGIDIPTANTI 887

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GF 618
           I+  A++ GLAQLHQLRGRVGR    +   LL  +   ++K++  RL  +++ ED   GF
Sbjct: 888 IMNRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHKKRMTKDAVKRLEAIESLEDLGAGF 947

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 948 TLATHDLEIRGAGELLGDEQSG 969


>gi|23097518|ref|NP_690984.1| transcription-repair coupling factor [Oceanobacillus iheyensis
           HTE831]
 gi|22775741|dbj|BAC12019.1| transcription-repair coupling factor (TRCF) [Oceanobacillus
           iheyensis HTE831]
          Length = 1173

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 144/431 (33%), Positives = 237/431 (54%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   R+  +  E +A  +  L   ++ K+  G   + + ++  +   + P+  T  Q 
Sbjct: 572 EWTKVKRKVQSSVEDIADDLIKLYAEREAKQ--GYAFSPDSELQHEFEASFPYQETDDQL 629

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             I++I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  I+ P  ILAQQHY
Sbjct: 630 RCIQEIKEDMEKERPMDRLLCGDVGYGKTEVAIRAAFKAISDGKQVAILVPTTILAQQHY 689

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I++  Q+  I + +++    +  + +  + +  G   +++GTH +    ++Y  L L+
Sbjct: 690 ETIRERFQDYPINIGLLSRFRTKKQQTETTKGLKSGNVDVVVGTHRILSKDVEYKDLGLL 749

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + K+ Q  T   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 750 IVDEEQRFGVKHKEKIKQLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPI 809

Query: 459 KTVIIPINRI--DEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +T +   N I   E IER    +  G + +++  ++E  +K   +   +V          
Sbjct: 810 QTYVTEYNPIFMREAIER---EMGRGGQVFFLYNRVESIDKIARDLGMLVPE-------- 858

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + IA+ HG+M++ + E+V+ SF  G   +L++TT+IE G+D+ + + +I+ +A++ GL+
Sbjct: 859 -AKIAVAHGQMNESELENVIFSFLEGEFDILVSTTIIETGVDIPNVNTLIVNHADYMGLS 917

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+QLRGRVGR   ++     Y     L++ +  RL  +K  TE   GF IA  DL  R 
Sbjct: 918 QLYQLRGRVGRSNRVAYAYFTYQKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLSIRG 977

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 978 TGNLLGSQQHG 988


>gi|282900454|ref|ZP_06308403.1| Transcription-repair coupling factor [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194647|gb|EFA69595.1| Transcription-repair coupling factor [Cylindrospermopsis
           raciborskii CS-505]
          Length = 1171

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 138/380 (36%), Positives = 212/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+ PT  Q  A++D+ +DM     M R++ GDVG GKT VA+ A+  AV AG Q  ++
Sbjct: 626 SFPYQPTTDQLKAVQDVKRDMESPRPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVALL 685

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  IL QQHY  IK+      I V ++        +R   +R+  G+  I++GTH L  
Sbjct: 686 APTTILTQQHYHTIKERFAPYPIHVGLLNRFRSHEEKRNIQKRLLTGELDIVVGTHQLLG 745

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +Q+  L L+++DE+ RFGV Q+ K+    T   VL ++ATPIPRTL ++  G  ++S 
Sbjct: 746 KGVQFKDLGLLVIDEEQRFGVNQKEKIKTLKTHLDVLTLSATPIPRTLYMSLSGIREMSL 805

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           IT  P  R+PI+T + P+N    V   ++  L  G + +++ P++E  +E+  R      
Sbjct: 806 ITTPPPTRRPIQTHLAPLNP-QIVSSAIRQELDRGGQVFYVVPRVEGIEETTTR------ 858

Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             L E   S    I HG+M +   ES M +F N    +L+ TT+IE G+D+   + I+IE
Sbjct: 859 --LREMIPSGRFVIAHGQMDESQLESTMLTFSNHEADILVCTTIIESGLDIPRVNTILIE 916

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLK---NTEDGFLI 620
           +A  FGL+QL+QLRGRVGR   I +   L++P    LS  +  RL  ++       G+ +
Sbjct: 917 DAHRFGLSQLYQLRGRVGRA-GIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGSGYQL 975

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  D++ R  G +LG +QSG
Sbjct: 976 AMRDMEIRGVGNLLGAEQSG 995


>gi|284054183|ref|ZP_06384393.1| transcription-repair coupling factor [Arthrospira platensis str.
           Paraca]
          Length = 1152

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 139/414 (33%), Positives = 226/414 (54%), Gaps = 21/414 (5%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + LL +  +  ++ G     +    Q++  + P+ PT  Q    +D+ +DM     M R+
Sbjct: 569 VDLLKLYAERSQKTGFSYPHDTPWQQEMEDSFPYKPTPDQLKCSQDVKRDMESDRPMDRL 628

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA+ A+  AV  G Q   +AP  IL QQHY  +K+      I + ++  
Sbjct: 629 VCGDVGFGKTEVAIRAIFKAVTGGKQVAFLAPTTILTQQHYHTLKERFAPYPIEIGLLNR 688

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               + ++   +++  G+  II+GTH++    I++  L L++VDE+ RFGV Q+ K+   
Sbjct: 689 FRSASEKKLIQQKLITGEIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKAL 748

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            T   VL +TATPIPRTL +   G  ++S IT  P  R+PIKT + P+N+ + +   +  
Sbjct: 749 KTHVDVLTLTATPIPRTLYMALSGIREMSLITTPPPSRRPIKTHLGPLNQ-ETIRAAICQ 807

Query: 478 VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            L  G + +++ P+IE  E+K +  R +V          ++ +AI HG+M   + ES+M 
Sbjct: 808 ELDRGGQVFYVVPRIEGIEEKSAAIREMVP---------SARLAIAHGQMEAGELESIML 858

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +F  G   +L+ TT+IE G+D+   + I++E+A  FGL QL+QLRGRVGR    +   L 
Sbjct: 859 TFSAGEADILVCTTIIESGLDIPRVNTILVEDAHKFGLGQLYQLRGRVGRAGAQAHAWLF 918

Query: 596 Y------HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           Y         L++++  RL  +K       G+ +A  DL+ R  G+ILG +QSG
Sbjct: 919 YPIKGDGQAALTEDAVKRLRAIKEFTQLGSGYQLAMRDLEIRGAGDILGAQQSG 972


>gi|15644199|ref|NP_229249.1| transcription-repair coupling factor, putative [Thermotoga maritima
           MSB8]
 gi|4982014|gb|AAD36518.1|AE001796_10 transcription-repair coupling factor, putative [Thermotoga maritima
           MSB8]
          Length = 893

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 134/409 (32%), Positives = 237/409 (57%), Gaps = 17/409 (4%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           ++  L M++Q  + + +P + E  + +K   + P+  T  Q+ +I+++L D++ +  M R
Sbjct: 338 ELVELYMKRQEAQGLSLPGDPE--LEEKFAESFPYIETPDQQQSIEEVLSDLASEKPMDR 395

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L GD G GKT VAL A   AV +G Q  ++ P  +LA+QHYE  K+  +   + VE++ 
Sbjct: 396 LLCGDAGVGKTEVALRAAFRAVASGKQVAVLVPTTVLARQHYENFKERMEPFGVKVELLD 455

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
            +     +++ +E++  G+  IIIGTH+L  + I++  L LVI+DE+ +FGV+Q+ +  +
Sbjct: 456 SSRTAREKKEIIEKLKKGEIDIIIGTHSLLNERIEFSDLGLVIIDEEQKFGVEQKERFKK 515

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
              + +VL ++ATPIPRTL +   G  D S I   P GRKP+   +   +  D++++   
Sbjct: 516 LRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVYVYVAEYS--DDLVKGAV 573

Query: 477 V-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           +  ++ G +  ++  ++EE        + E F  L   F    IA+ HG+MS    E ++
Sbjct: 574 IREINRGGQVIYVHNRVEE--------LPEVFEKLKRMFPELEIAVAHGKMSRKTMERIV 625

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G   +L+ TT+IE G+D+ +A+ +I+++A+ +GL+QL+QLRGRVGR +  +    
Sbjct: 626 HEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAQRYGLSQLYQLRGRVGRSDRRAFAYF 685

Query: 595 LYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           LY     +++  RL VLK+      G  IA +D++ R  G++LG++Q G
Sbjct: 686 LYPKGTPRSALERLKVLKSYTGFGSGLQIALKDMELRGVGDVLGLEQHG 734


>gi|256848382|ref|ZP_05553825.1| transcription-repair coupling factor [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714980|gb|EEU29958.1| transcription-repair coupling factor [Lactobacillus coleohominis
           101-4-CHN]
          Length = 1179

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 143/431 (33%), Positives = 233/431 (54%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R      E +AG +  L  +++  K    P   +  + +K     P+S TK Q 
Sbjct: 569 EWAKTKRRVAQKVENIAGDLVDLYAQRKTAKGFAYP--KDDYLQEKFDHEFPYSETKDQL 626

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I ++  DM +   M R+L GDVG GKT VAL A+  AV  G Q   + P  ILAQQHY
Sbjct: 627 RSINEVKADMEKPKPMDRLLVGDVGYGKTEVALRAIFKAVTGGKQVAFLVPTTILAQQHY 686

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALER-IAHGQAHIIIGTHALFQDSIQYYKLIL 397
           + +++  +   + +E+++       + K +E+ +A G   +++GTH L    + +  L L
Sbjct: 687 DTMRERFEGFPVKIEMMS-RFRTPKQMKTIEKGLADGSIDVVVGTHRLLSKDVHFKDLGL 745

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV+ + KL Q  +   VL +TATPIPRTL ++ LG  D+S +   P GR P
Sbjct: 746 LIIDEEQRFGVKHKEKLKQLKSNVDVLTLTATPIPRTLHMSMLGVRDLSVLETPPVGRFP 805

Query: 458 IKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           I+T ++  N     D ++  +K     G + Y++  ++     ++   VV    +L    
Sbjct: 806 IQTYVLEQNWSAIRDGILREMK----RGGQVYYLHNRV-----NDIERVVNEIETLVPE- 855

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + +A IHG+MS+   E V+  F  G   +L+ T++IE G+D+ + + + +ENA+  GLA
Sbjct: 856 -ARVADIHGQMSEAQLEGVLYDFIRGEYDVLVTTSIIETGVDIPNVNTLFVENADRMGLA 914

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+Q+RGR+GR   ++    +Y P   L++    RL+ +++ TE   GF IA  DL  R 
Sbjct: 915 QLYQIRGRIGRSNRVAYAYFMYQPNKVLTEPGEKRLAAIRDFTELGSGFKIAMRDLAIRG 974

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 975 AGNLLGKQQHG 985


>gi|238922870|ref|YP_002936383.1| transcription-repair coupling factor [Eubacterium rectale ATCC 33656]
 gi|238874542|gb|ACR74249.1| transcription-repair coupling factor [Eubacterium rectale ATCC 33656]
          Length = 1177

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 150/456 (32%), Positives = 246/456 (53%), Gaps = 23/456 (5%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EWT +  R R A  ++    + L   R+Q   + G     +    ++     PF  T+ Q
Sbjct: 575  EWTRTKNRVRGAVKQIAGDLVKLYAQREQ---QNGYAFGEDTVWQREFEELFPFDETEDQ 631

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              AI+    DM     M R++ GDVG GKT VA+ A   AV+   Q   +AP  ILAQQ 
Sbjct: 632  ILAIEATKTDMQSHKIMDRLICGDVGYGKTEVAIRAAFKAVQDSKQVAYLAPTTILAQQI 691

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y+   +  ++  + V+++      A ++K +E++  G+  IIIGTH +    +Q+  L L
Sbjct: 692  YDTFSQRMKDFPVNVDLMCRFRSAAEQKKTIEKLKKGEVDIIIGTHRILSKDVQFKDLGL 751

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +++DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S + E P  R P
Sbjct: 752  LVIDEEQRFGVTHKEKIKQMKVNVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPMDRVP 811

Query: 458  IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-T 515
            I+T ++  N  DE++ E +   L+   + Y++  ++        R + +    L E    
Sbjct: 812  IQTYVMEYN--DELVREAINRELARNGQVYYVYNKV--------RDIADITAKLQELVPD 861

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            +++A  HG+M + + E +M  F NG   +L++TT+IE G+D+ + + +II +A++ GL+Q
Sbjct: 862  ATVAFAHGQMKETELERIMYRFINGEIDVLVSTTIIETGLDISNVNTMIIHDADNMGLSQ 921

Query: 576  LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
            L+QLRGRVGR    +   L+Y  +  L + +  RL+ +K   D   GF IA  DL+ R  
Sbjct: 922  LYQLRGRVGRSNRTAYAFLMYRRNKMLKEVAEKRLAAIKEYSDLGSGFKIAMRDLEIRGA 981

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            G +LG +QSG  + +    +L+  +L  A K+AK I
Sbjct: 982  GNLLGAEQSGHMEAV--GYDLYCKMLSEAVKEAKGI 1015


>gi|167627778|ref|YP_001678278.1| transcription-repair coupling factor [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597779|gb|ABZ87777.1| transcription-repair coupling factor [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 1139

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 139/382 (36%), Positives = 209/382 (54%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  AI D+ +DM     M R++ GDVG GKT +A+ A   A +   Q  I+
Sbjct: 592 DFPYEETPDQLLAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAIL 651

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHY   K    NT + +E+IT +     + +  + +  G   IIIGTH L  
Sbjct: 652 VPTTILAQQHYNSFKDRFANTAVNIEVITRSKTAKAQEELFDNLKKGTVDIIIGTHKLIS 711

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I +  L L+I+DE+HRFGV Q+ KL        +L M+ATPIPR+L +      D+S 
Sbjct: 712 SKIDFNNLGLLIIDEEHRFGVAQKEKLKALKAEIDILTMSATPIPRSLSMAFSALRDLSI 771

Query: 448 ITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  +KT +     N I E + R  +    G + +++  +++  +KK+   + +
Sbjct: 772 IASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVDTIQKKKEILQEL 828

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
             R           IAI HG+MS+ + + +M  FK+    +L+ TT+IE GID+ +A+ +
Sbjct: 829 FPRL---------RIAIAHGQMSEKEIQKIMFDFKHNKYHILLCTTIIETGIDIPNANTL 879

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618
           IIE+A + GLAQLHQLRGRVGR    +   +L      ++K++  RL  + +T+    GF
Sbjct: 880 IIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLVPSEGSITKDATKRLEAIGSTDSLGGGF 939

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GEILG +QSG
Sbjct: 940 TLANHDLEIRGAGEILGQEQSG 961


>gi|330686080|gb|EGG97702.1| transcription-repair coupling factor [Staphylococcus epidermidis
            VCU121]
          Length = 1169

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 155/446 (34%), Positives = 237/446 (53%), Gaps = 23/446 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            L+ + KQ +  +G     + +       + P+  T  Q  +I +I  DM ++  M R+L 
Sbjct: 587  LIDLYKQREMSVGYQFGPDTEEQSTFELDFPYELTPDQSKSIDEIKGDMERERPMDRLLC 646

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV  G Q   + P  ILAQQHYE + +  Q+  + +++I+   
Sbjct: 647  GDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLISRFR 706

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                 ++  E +  G   I++GTH L    I Y  L L+IVDE+ RFGV+ + ++     
Sbjct: 707  STKEVKETKEGLKSGYVDIVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTLKN 766

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP--INRIDEVIERLKV 477
               VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++    N I E +ER   
Sbjct: 767  NVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALER--- 823

Query: 478  VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDS 536
             LS   + +++  +++        S+ E+   L      ++IA+ HG+M++ D E  M S
Sbjct: 824  ELSRDGQVFYLYNKVQ--------SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLS 875

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F N    +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+QLRGRVGR   I     L 
Sbjct: 876  FINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFL- 934

Query: 597  HPP---LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            HP    L++ +  RL  +K  TE   GF IA  DL  R  G +LG +Q G    +    +
Sbjct: 935  HPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSV--GFD 992

Query: 651  LHDSLLEIARKDAKHILTQDPDLTSV 676
            L+  +LE A  + + I  + PD+  V
Sbjct: 993  LYSQMLEEAVNEKRGIKEEAPDVPDV 1018


>gi|315640551|ref|ZP_07895659.1| transcription-repair coupling factor [Enterococcus italicus DSM
           15952]
 gi|315483755|gb|EFU74243.1| transcription-repair coupling factor [Enterococcus italicus DSM
           15952]
          Length = 1179

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 143/431 (33%), Positives = 235/431 (54%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   R+     E +A  +  L  +++ +K  G     +    ++     P+S T+ Q 
Sbjct: 568 EWTKTKRKVSGKIEDIADDLIQLYAQREAEK--GFAFGPDDGYQKEFEDAFPYSETEDQL 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I +DM ++  M R+L GDVG GKT VAL A   A+    Q  I+ P  ILAQQHY
Sbjct: 626 RSTSEIKKDMEKEKPMDRLLVGDVGFGKTEVALRAAFKAIRESKQVAILVPTTILAQQHY 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +    Q   + + I++    ++ +++ +E++  GQ  I++GTH L    I +  L L+
Sbjct: 686 ETMVDRFQGFPVNIGILSRFRTKSQQQETIEQLRRGQIDIVVGTHRLLSKDITFADLGLL 745

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + +L +  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746 VIDEEQRFGVKHKERLKELRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 805

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +T ++  N   I E I R    ++ G + +++  +++  E+K    + +V          
Sbjct: 806 QTYVMESNPGAIREAILR---EMARGGQVFYLYNRVDTIERKVEELQMLVP--------- 853

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I   HG+M++I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 854 DARIGYAHGQMTEIQLENTLFDFIEGEYDILVTTTIIETGVDIPNANTLFVENADYMGLS 913

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            L+QLRGRVGR   ++    +Y P   L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 914 TLYQLRGRVGRSNRVAYAYFMYEPQKILTEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 973

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 974 AGNLLGAQQHG 984


>gi|254468808|ref|ZP_05082214.1| transcription-repair coupling factor [beta proteobacterium KB13]
 gi|207087618|gb|EDZ64901.1| transcription-repair coupling factor [beta proteobacterium KB13]
          Length = 1120

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 150/430 (34%), Positives = 233/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R+ L      A ++  L   ++ KK  G+   ++    QK     PF  T  Q 
Sbjct: 526 QWEKEKRKALKQVYDTAAELLNLYALREKKK--GLVSKIDFLEYQKFANEFPFEETPDQM 583

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI+ +++DM     M R++ GDVG GKT VA+ A   ++    Q +I+ P  +LA QHY
Sbjct: 584 LAIESVIKDMESARPMDRLICGDVGFGKTEVAMRAAFISIMNNRQVIILVPTTLLASQHY 643

Query: 339 E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
             F+ +++ +  + +E I+       + + LE++A+G+  I+IGTH L Q  I+   + L
Sbjct: 644 NNFVDRFS-SFPVEIEEISRFKSNKQQNEVLEKLANGKVDIVIGTHRLLQKDIKIDNIGL 702

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+HRFGV+Q+  L +  T    L +TATPIPRTL ++  G  D S I+  P  R  
Sbjct: 703 IIVDEEHRFGVRQKEMLKKFKTNTDFLALTATPIPRTLSMSLEGLRDFSIISTPPQKRLS 762

Query: 458 IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           IKT++   +   I E + R     + G +AY++   +     S+  ++ E+   +     
Sbjct: 763 IKTMVKSFSEGIIKEALTR---EFNRGGQAYFLHNDV-----SSIYAISEKLTKIMP--D 812

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +AI HG+M + + E VM  F      LL+ TT+IE GID+  ++ III NA+ FGL+Q
Sbjct: 813 AKVAIAHGQMKEKELERVMQDFHQQRFNLLLCTTIIETGIDIPTSNTIIINNADRFGLSQ 872

Query: 576 LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL   +  L+  +  RL  ++  ED   G+ +A  DL+ R  
Sbjct: 873 LHQLRGRVGRSHHQAFAYLLIDENRSLTSKAKKRLEAIQYLEDLGSGYFLAMHDLEIRGA 932

Query: 631 GEILGIKQSG 640
           GEILG +QSG
Sbjct: 933 GEILGDQQSG 942


>gi|50084573|ref|YP_046083.1| transcription-repair coupling protein [Acinetobacter sp. ADP1]
 gi|49530549|emb|CAG68261.1| transcription-repair coupling protein [Acinetobacter sp. ADP1]
          Length = 1171

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 146/429 (34%), Positives = 230/429 (53%), Gaps = 21/429 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++     +      +  T  Q +
Sbjct: 571 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSPYMQFSSGFAYEETLDQAN 628

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM     M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHYE
Sbjct: 629 AIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLLAQQHYE 688

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  I +E+++        +K +E +  G+  I++GTH L Q+++Q++ L L+I
Sbjct: 689 SFKDRFADWPIRIEVLSRFGSNKTHQKNIEDLQTGKVDIVVGTHKLLQETVQFHDLGLMI 748

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 749 VDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 808

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517
           T  +  +  D V E +   L  G + Y++  +++  E+   N R++V           + 
Sbjct: 809 T-FVQEHTDDSVREAILRELLRGGQVYFLHNEVDSIERTAENIRNLVPE---------AR 858

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ II+E A+  GLAQLH
Sbjct: 859 VAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIMERADKLGLAQLH 918

Query: 578 QLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           QLRGRVGR    +   LL  P    L  ++  RL  ++       GF++A EDL+ R  G
Sbjct: 919 QLRGRVGRSHHQAYAYLLV-PSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAG 977

Query: 632 EILGIKQSG 640
           E+LG +QSG
Sbjct: 978 ELLGEQQSG 986


>gi|325134475|gb|EGC57120.1| transcription-repair coupling factor [Neisseria meningitidis M13399]
          Length = 1305

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 750  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 809

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 810  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 868

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 869  THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 928

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 929  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 982

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 983  NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1040

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 1041 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1100

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1101 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1156

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1157 ITTEIKLH 1164


>gi|325144576|gb|EGC66875.1| transcription-repair coupling factor [Neisseria meningitidis
            M01-240013]
 gi|325205943|gb|ADZ01396.1| transcription-repair coupling factor [Neisseria meningitidis
            M04-240196]
          Length = 1296

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 741  QAFADGFGYEETEDQAAAIAAVIKDLTQTKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 800

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 801  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 859

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 860  THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 919

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 920  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 973

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 974  NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1031

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 1032 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1091

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1092 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1147

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1148 ITTEIKLH 1155


>gi|86608683|ref|YP_477445.1| transcription-repair coupling factor [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557225|gb|ABD02182.1| transcription-repair coupling factor [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 1158

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 140/386 (36%), Positives = 215/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q++  + P+  T  Q  A+++I +DM     M R+L GDVG GKT VA+ A+  AV AG 
Sbjct: 597 QELEDSFPYPLTPDQLRAVQEIKRDMESPRPMDRLLCGDVGFGKTEVAIRAIFKAVTAGK 656

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++AP  IL QQHY  +K+      I V ++        +++ L R+  G+  +++GT
Sbjct: 657 QVALLAPTTILTQQHYHTLKERFAPYPIQVGLLNRFRTSEEKKEILSRLKSGELDVVVGT 716

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L    +Q+  L L+++DE+ RFGV Q+ K+    T   VL +TATPIPRTL +   G 
Sbjct: 717 HQLLGKDVQFRDLGLLVIDEEQRFGVNQKEKIKLLKTQVDVLTLTATPIPRTLYMALSGL 776

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIE--EKKESN 499
            ++S I   P  R+PIKT + P N   EVI   ++  L  G + +++  +IE  E+  + 
Sbjct: 777 REMSLIQTPPPSRRPIKTYLSPYN--PEVIRTAIRQELDRGGQVFYVVNRIEGIEEASAK 834

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R  V           + IAI HG+M + + E+ M +F NG   +L+ TT+IE G+D+  
Sbjct: 835 LREWVP---------GARIAIAHGQMPEGELEATMLAFNNGEIDILVCTTIIESGLDIPR 885

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NT 614
            + I+IENA+ FGLAQL+QLRGRVGR    +   L Y     L++ +  RL  ++     
Sbjct: 886 VNTILIENAQEFGLAQLYQLRGRVGRAGIQAHAWLFYREDGILTEEARKRLQAIQEFTQL 945

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSG 640
             G+ +A  D++ R  G +LG +QSG
Sbjct: 946 GSGYQLAMRDMEIRGIGNLLGTEQSG 971


>gi|262278954|ref|ZP_06056739.1| transcription-repair coupling factor [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259305|gb|EEY78038.1| transcription-repair coupling factor [Acinetobacter calcoaceticus
           RUH2202]
          Length = 1153

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 146/430 (33%), Positives = 228/430 (53%), Gaps = 23/430 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFGFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLHDMQQARPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K +E +  G+  I++GTH L Q+++Q+  L L++
Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKAHTKNIEDLIAGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T +       I E I R    L  G + Y++  +++  E+   N R +V           
Sbjct: 793 TFVQEHTEASIKEAILR---ELLRGGQVYFLHNEVDTIERAAENIRVLVPE--------- 840

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQ
Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKEFNVLVCSTIIETGIDVPNANTILIERADKLGLAQ 900

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  
Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA 960

Query: 631 GEILGIKQSG 640
           GE+LG +QSG
Sbjct: 961 GELLGEQQSG 970


>gi|145346965|ref|XP_001417951.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578179|gb|ABO96244.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 754

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 152/448 (33%), Positives = 239/448 (53%), Gaps = 19/448 (4%)

Query: 233 LLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           L+  Q+ + L R Q  +E   +P   + + A++   + PF+ T  Q SAI++I +D+ Q 
Sbjct: 163 LVVNQMVVYLQRLQCVREPYPLP---DPERAKQFDASFPFTLTPDQTSAIQEITEDLQQD 219

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VA+ AM     +GG   +MAP  +LA+QH   +    +   I 
Sbjct: 220 APMDRLVIGDVGFGKTEVAMRAMFHVASSGGGVFMMAPTTVLAKQHAANLAVRFRPLGIN 279

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK-LILVIVDEQHRFGVQQ 410
           VE++T ++  A +    +    G+  II+GTH L     +YYK L L+++DE+ RFGV+ 
Sbjct: 280 VELVTRHIQAAKQNTIFDDFRDGKVQIIVGTHKLVNLEQEYYKQLRLLVIDEEQRFGVKH 339

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           + +++       VL ++ATPIPRTL +   G  D S +   P  R+PI TV+ P N  D+
Sbjct: 340 KDQISALKAEVDVLTLSATPIPRTLHMAMSGFRDASLVQTPPPERRPINTVLAPQND-DD 398

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           + + ++  +S   + Y+I P+I     +  R   +R   L  +    I   HG+M     
Sbjct: 399 IRKAIEYEISRNGQIYYIVPRI-----NMMRDACDRLLRLFPNL--QIMTAHGQMDGEAI 451

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           +  M+SF NG+  +LIATT++E G+D+ + + IIIEN + FGLA L+QLRGRVGR    +
Sbjct: 452 DDAMESFSNGSADVLIATTIVESGLDIPNCNTIIIENVQFFGLASLYQLRGRVGRAGRQA 511

Query: 591 SCILLY---HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
              + Y      L+  +  RL+ L+      +GF ++E D+  R  G + G KQSG    
Sbjct: 512 YAYMFYSADESELTTGAQERLAALEECCGLGEGFRLSERDMGIRGVGTMFGEKQSGDVDS 571

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPD 672
           + A   L     ++ R D   I T D D
Sbjct: 572 VGADLYLELLYKQLQRIDNLRIKTIDAD 599


>gi|323142048|ref|ZP_08076896.1| transcription-repair coupling factor [Phascolarctobacterium sp. YIT
           12067]
 gi|322413435|gb|EFY04306.1| transcription-repair coupling factor [Phascolarctobacterium sp. YIT
           12067]
          Length = 1090

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 141/381 (37%), Positives = 209/381 (54%), Gaps = 21/381 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q  AI +I  DM +   M R+L GDVG GKT VAL A   AV  G Q  ++A
Sbjct: 545 FPYEETPDQLKAIAEIKADMEKPQPMERLLCGDVGYGKTEVALRAAFKAVLDGKQVAVLA 604

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQHY   K+  +N  + V ++        +R  L+ +A G+  I+IGTH L Q 
Sbjct: 605 PTTVLAQQHYITFKERVRNFGVEVRLLNRFCTPKEQRTVLQEVADGKVDILIGTHRLLQP 664

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + +  L L+I+DE+ RFGV Q+ K+ +      VL ++ATPIPRTL +  +   D+S I
Sbjct: 665 DVNFTSLGLLIIDEEQRFGVAQKEKIKKWHLGIDVLSLSATPIPRTLHMALVNGRDMSVI 724

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
              P  R P++T +   N   I E +ER    L  G + Y+I  ++   E   +  R +V
Sbjct: 725 ESPPEDRLPVETYVSEYNDGMIKEALER---ELRRGGRIYYISNRVSALEPLAAKLRRLV 781

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                       SI I HG+M++   E  M +F  G C +L+ TT++E G+DV  A+ II
Sbjct: 782 PGI---------SIKIAHGQMNEDALEDAMITFYEGGCDVLLCTTIVENGLDVPLANTII 832

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619
           I+ A++FGL+QL+Q+RGRVGR   ++    +Y P   LS+ +  RL  +++  +   GF 
Sbjct: 833 IDGADNFGLSQLYQMRGRVGRSSRLAYAYFVYQPNKALSEIAEKRLQAIRDFTELGAGFK 892

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           IA  DL+ R  G +LG +Q G
Sbjct: 893 IAMRDLEIRGAGNLLGPQQHG 913


>gi|261400667|ref|ZP_05986792.1| transcription-repair coupling factor [Neisseria lactamica ATCC 23970]
 gi|269209577|gb|EEZ76032.1| transcription-repair coupling factor [Neisseria lactamica ATCC 23970]
          Length = 1164

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 607  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 666

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 667  QVAVLAPTTLLVEQHAQNFADRFADFPVKVAGLSRFNNNKA-TKAALEGMADGTVDIVIG 725

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 726  THKLVQDDIRFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 785

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 786  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 839

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 840  NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 897

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 898  TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 957

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 958  TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1013

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1014 ITTEIKLH 1021


>gi|16799323|ref|NP_469591.1| transcription-repair coupling factor [Listeria innocua Clip11262]
 gi|16412675|emb|CAC95479.1| transcription-repair coupling factor [Listeria innocua Clip11262]
          Length = 1179

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/430 (33%), Positives = 233/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T  Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETDDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQHY
Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHY 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   I++GTH L    ++Y  L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDIVVGTHRLLSKDVEYQDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751 VVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +   N   + E IER    L+   + Y++  ++E        S+ ++ + +      
Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+Q
Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR   I+    +Y     L + +  RLS +K  TE   GF IA  DL  R  
Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979

Query: 631 GEILGIKQSG 640
           G ILG +Q G
Sbjct: 980 GNILGAQQHG 989


>gi|331086145|ref|ZP_08335227.1| hypothetical protein HMPREF0987_01530 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406304|gb|EGG85818.1| hypothetical protein HMPREF0987_01530 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 1113

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/409 (35%), Positives = 232/409 (56%), Gaps = 17/409 (4%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q +AI+   +DM  K  M R++ GDVG GKT VA+ A   AV+   Q V + P  +L
Sbjct: 566 TDDQLNAIEATKKDMESKKIMDRLICGDVGYGKTEVAVRAAFKAVQESKQVVYLVPTTVL 625

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY    +  ++  + V+++      A +RK ++ +  G   I+IGTH +  D +++ 
Sbjct: 626 AQQHYNTFVQRMKDFPVRVDLLCRFRTPAQQRKTIDDVRKGLVDIVIGTHRVLSDDLKFK 685

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGVQ + K+ Q      VL +TATPIPRTL ++ +G  D+S + E P 
Sbjct: 686 DLGLLIIDEEQRFGVQHKEKIKQMKENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPM 745

Query: 454 GRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            R PI+T ++  N  DE++ E ++  L+   + Y++  ++++  E     V +R   L  
Sbjct: 746 DRMPIQTYVMEYN--DEMVREAIERELARDGQVYYVYNRVQDIDE-----VADRIQKLVP 798

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +++A  HG+M +   E +M  F NG   +LI+TT+IE G+D+ +A+ +II +A+  G
Sbjct: 799 E--ANVAFAHGQMREHQLERIMYDFINGEIDVLISTTIIETGLDISNANTMIIHDADRLG 856

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
           L+QL+QLRGRVGR   ++   LLY     L + +  RLS ++   D   GF IA  DL+ 
Sbjct: 857 LSQLYQLRGRVGRSNRMAYAFLLYKRDKLLKEVAEKRLSAIREFTDLGSGFKIAMRDLEI 916

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           R  G +LG +Q G  + +    +L+  +L  A K  K  + ++P  T+V
Sbjct: 917 RGAGNLLGAEQHGHMEAV--GYDLYCKMLNEAVKHLKGEVEEEPYTTTV 963


>gi|325140492|gb|EGC63013.1| transcription-repair coupling factor [Neisseria meningitidis CU385]
          Length = 1305

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 750  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 809

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 810  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 868

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 869  THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 928

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 929  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 982

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 983  NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1040

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 1041 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1100

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1101 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1156

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1157 ITTEIKLH 1164


>gi|297620477|ref|YP_003708614.1| putative transcription-repair-coupling factor [Waddlia chondrophila
           WSU 86-1044]
 gi|297375778|gb|ADI37608.1| putative transcription-repair-coupling factor [Waddlia chondrophila
           WSU 86-1044]
          Length = 1092

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 143/386 (37%), Positives = 217/386 (56%), Gaps = 18/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q      PFS T+ Q +A+  I +DM+  + M R++ GDVG GKT VA+ A   AV  GG
Sbjct: 564 QAFEEEFPFSETEDQLNAVACIKKDMTSPSAMDRLVCGDVGYGKTEVAMRAAFKAVMDGG 623

Query: 323 QAVIM-APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           + V M  P  +LA QHYE   +  +N  I + +++        R+ LE +A+G   I+IG
Sbjct: 624 KQVAMLVPTTVLAMQHYENFIERMRNFPINISVLSRFRSTKQTRQTLEGVANGTVDIVIG 683

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH L  + + ++ L L+I+DE+ RFGV+ +  L +  T    L ++ATPIPRTL ++ +G
Sbjct: 684 THRLISEDVSFHNLGLIIIDEEQRFGVRAKEHLKKAKTGVDCLTLSATPIPRTLYMSLIG 743

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESN 499
             D+S I   P  R+PIKTVI   +  DE+++   L+    +G +AY I  ++E      
Sbjct: 744 ARDMSVINTPPQDRQPIKTVISEPS--DELLKNALLREFARDG-QAYLIHNRVE-----T 795

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             ++  R   L     + I I+HG+M   + ++V   FKNG   +LIATT++E GID+ +
Sbjct: 796 LPNMYRRVKKLLPQ--ARIDIVHGQMKPAEIDTVFHHFKNGEIDILIATTIVESGIDIPN 853

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL---YH--PPLSKNSYTRLSVLKNT 614
           A+ I+I+ A+ FGLA L+QLRGRVGR    +    L   +H  P +S+     L+     
Sbjct: 854 ANTILIDRADRFGLADLYQLRGRVGRWNRRAFAYFLIPKFHSLPEISRKRLGALAESSGY 913

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSG 640
             G  +A  DL+ R  G+ILG +QSG
Sbjct: 914 GGGMKLAMRDLEIRGAGDILGTEQSG 939


>gi|299770361|ref|YP_003732387.1| transcription-repair coupling factor [Acinetobacter sp. DR1]
 gi|298700449|gb|ADI91014.1| transcription-repair coupling factor [Acinetobacter sp. DR1]
          Length = 1153

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/428 (33%), Positives = 227/428 (53%), Gaps = 19/428 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFGFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLHDMQQARPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K +E +  G+  I++GTH L Q+++Q+  L L++
Sbjct: 673 SFKDRFADWPVRIEVLSRFGSSKTHTKNIEDLIAGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517
           T +        V E +   L  G + Y++  +++  E+   N R +V           + 
Sbjct: 793 TFVQEHTEA-SVKEAILRELLRGGQVYFLHNEVDTIERAAENIRVLVPE---------AR 842

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLH
Sbjct: 843 VAVAHGQMRERELEQVMQQFYHKEFNVLVCSTIIETGIDVPNANTILIERADKLGLAQLH 902

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE
Sbjct: 903 QLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGE 962

Query: 633 ILGIKQSG 640
           +LG +QSG
Sbjct: 963 LLGEQQSG 970


>gi|258446110|ref|ZP_05694271.1| transcription-repair coupling factor [Staphylococcus aureus A6300]
 gi|257855087|gb|EEV78029.1| transcription-repair coupling factor [Staphylococcus aureus A6300]
          Length = 1168

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/382 (37%), Positives = 213/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTSKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++N+  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTENAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|237785157|ref|YP_002905862.1| transcription-repair coupling factor [Corynebacterium kroppenstedtii
            DSM 44385]
 gi|237758069|gb|ACR17319.1| transcription-repair coupling factor [Corynebacterium kroppenstedtii
            DSM 44385]
          Length = 1281

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/430 (33%), Positives = 231/430 (53%), Gaps = 21/430 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +A  +  L  ++Q     G   + +    +++  N PF+ T+ Q 
Sbjct: 644  DWKNTKKKARAAVRDIAADLVQLYAKRQAAP--GYAFSPDTPWQREMEDNFPFTETEDQY 701

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ + +DM +   M R++ GDVG GKT VA+ A   AV+ G Q V++ P  +LAQQH+
Sbjct: 702  NAIEAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVLLVPTTLLAQQHF 761

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  +   I +  ++        R+ L  +A GQ  I+IGTH L Q  +Q+  L LV
Sbjct: 762  ATFSERMEGFPITIRQLSRFTTPKQAREVLTGLAEGQVDIVIGTHRLLQTGVQWKNLGLV 821

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            IVDE+ RFGV+ +  +  KA   HV  L M+ATPIPRTL ++  G  D+S I   P  R 
Sbjct: 822  IVDEEQRFGVEHKEHI--KALRSHVDMLTMSATPIPRTLEMSMAGIRDMSTILTPPEDRH 879

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            P+ T  + +    ++   ++  L    + +++         +  RS+ +    + E    
Sbjct: 880  PVLT-YVGVQEDKQIAAAIRRELLRDGQVFYV--------HNRVRSIEQVAQHIRELVPE 930

Query: 517  S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + + + HG+M++   E+ ++ F +    +L+ TT++E G+D+ +A+ +I+ENA H GLAQ
Sbjct: 931  ARVVVAHGQMNEDQLENTVEGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLAQ 990

Query: 576  LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
            LHQLRGRVGR  E      LY P   L++ SY RLS +    D   G  +A +DL+ R  
Sbjct: 991  LHQLRGRVGRSRERGYAYFLYPPSQTLTETSYDRLSTIAQNNDLGAGMAVAMKDLEMRGA 1050

Query: 631  GEILGIKQSG 640
            G +LG +QSG
Sbjct: 1051 GNVLGAEQSG 1060


>gi|88813291|ref|ZP_01128530.1| Transcription-repair coupling factor [Nitrococcus mobilis Nb-231]
 gi|88789463|gb|EAR20591.1| Transcription-repair coupling factor [Nitrococcus mobilis Nb-231]
          Length = 1146

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/380 (37%), Positives = 211/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q+ AI  +L D+     M R++ GDVG GKT VA+ A    V+   Q  ++
Sbjct: 594 QFPFEETPDQQQAIDGVLSDLESSRPMDRVVCGDVGFGKTEVAMRAAFIGVQDSRQVAVL 653

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+   +    +  I +E ++       +  AL+ +A G+  I+IGTH L Q
Sbjct: 654 VPTTLLAQQHFRNFRDRFADWPIRIEQLSRFRSSKEQNTALQDLAAGKVDIVIGTHKLLQ 713

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           DS+++  L LVI+DE+HRFGV+Q+ +L +  T   VL++TATPIPRTL +   G  D+S 
Sbjct: 714 DSVRFKNLGLVIIDEEHRFGVRQKEQLKRLRTNVDVLMLTATPIPRTLNMALAGLRDMSI 773

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVER 506
           I   PA R  +KT +   N  D +I+   +  L  G + Y++  +I        RS+   
Sbjct: 774 IATPPARRLAVKTFVNQWN--DALIQEACLRELHRGGQVYFLHNEI--------RSIERI 823

Query: 507 FNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              LHE    + + I HG+M + + E VM  F +    +L+ TT+IE GIDV  A+ III
Sbjct: 824 ARQLHELIPDARVRIAHGQMRETELERVMLDFYHQRFNVLVCTTIIESGIDVPSANTIII 883

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620
             A+  GLA+L+QLRGRVGR    +   L+  P   ++ ++  RL  + + ED   GF +
Sbjct: 884 NRADRLGLARLYQLRGRVGRSHHRAYAYLIAPPKNLMTPDAVKRLEAIASLEDLGVGFSL 943

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG +QSG
Sbjct: 944 ASHDLEIRGAGELLGDEQSG 963


>gi|241668341|ref|ZP_04755919.1| transcription-repair coupling factor [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876874|ref|ZP_05249584.1| transcription-repair coupling factor [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842895|gb|EET21309.1| transcription-repair coupling factor [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 1139

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 139/382 (36%), Positives = 209/382 (54%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  AI D+ +DM     M R++ GDVG GKT +A+ A   A +   Q  I+
Sbjct: 592 DFPYEETPDQILAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAIL 651

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHY   K    NT + +E+IT +     + +  + +  G   IIIGTH L  
Sbjct: 652 VPTTILAQQHYNSFKDRFANTAVNIEVITRSKTAKAQEELFDNLKKGTVDIIIGTHKLIS 711

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I +  L L+I+DE+HRFGV Q+ KL        +L M+ATPIPR+L +      D+S 
Sbjct: 712 SKIDFNNLGLLIIDEEHRFGVAQKEKLKALKAEIDILTMSATPIPRSLSMAFSALRDLSI 771

Query: 448 ITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  +KT +     N I E + R  +    G + +++  +++  +KK+   + +
Sbjct: 772 IASPPAKRLSVKTFVKEYDNNIIREAVSRETI---RGGQIFYLYNKVDTIQKKKEILQEL 828

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
             R           IAI HG+MS+ + + +M  FK+    +L+ TT+IE GID+ +A+ +
Sbjct: 829 FPRL---------RIAIAHGQMSEKEIQKIMFDFKHNKYHILLCTTIIETGIDIPNANTL 879

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618
           IIE+A + GLAQLHQLRGRVGR    +   +L      ++K++  RL  + +T+    GF
Sbjct: 880 IIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLVPSEGSITKDATKRLEAIGSTDSLGGGF 939

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GEILG +QSG
Sbjct: 940 TLANHDLEIRGAGEILGQEQSG 961


>gi|322375221|ref|ZP_08049735.1| transcription-repair coupling factor [Streptococcus sp. C300]
 gi|321280721|gb|EFX57760.1| transcription-repair coupling factor [Streptococcus sp. C300]
          Length = 1167

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 150/407 (36%), Positives = 231/407 (56%), Gaps = 27/407 (6%)

Query: 269  IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             P+  T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV    Q V++ 
Sbjct: 609  FPYVETDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLV 668

Query: 329  PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            P  +LAQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +   
Sbjct: 669  PTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQVDILIGTHRVLSK 728

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I
Sbjct: 729  DVVFSDLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVI 788

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSV 503
               P  R P++T ++  N  D VI     VL E   G + Y++  +++  ++K S  + +
Sbjct: 789  ETPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQIYYLYNKVDTIDRKVSELQEL 844

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +           +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ +
Sbjct: 845  IPE---------ASIGFVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTL 895

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGF 618
             IENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF
Sbjct: 896  FIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGF 955

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
             IA  DL  R  G +LGI QSG    +    EL+  LLE  IA+++ 
Sbjct: 956  KIAMRDLSIRGAGNLLGISQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|325662342|ref|ZP_08150951.1| hypothetical protein HMPREF0490_01690 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471344|gb|EGC74567.1| hypothetical protein HMPREF0490_01690 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 1115

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/409 (35%), Positives = 232/409 (56%), Gaps = 17/409 (4%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q +AI+   +DM  K  M R++ GDVG GKT VA+ A   AV+   Q V + P  +L
Sbjct: 568 TDDQLNAIEATKKDMESKKIMDRLICGDVGYGKTEVAVRAAFKAVQESKQVVYLVPTTVL 627

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY    +  ++  + V+++      A +RK ++ +  G   I+IGTH +  D +++ 
Sbjct: 628 AQQHYNTFVQRMKDFPVRVDLLCRFRTPAQQRKTIDDVRKGLVDIVIGTHRVLSDDLKFK 687

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGVQ + K+ Q      VL +TATPIPRTL ++ +G  D+S + E P 
Sbjct: 688 DLGLLIIDEEQRFGVQHKEKIKQMKENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPM 747

Query: 454 GRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            R PI+T ++  N  DE++ E ++  L+   + Y++  ++++  E     V +R   L  
Sbjct: 748 DRMPIQTYVMEYN--DEMVREAIERELARDGQVYYVYNRVQDIDE-----VADRIQKLVP 800

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +++A  HG+M +   E +M  F NG   +LI+TT+IE G+D+ +A+ +II +A+  G
Sbjct: 801 E--ANVAFAHGQMREHQLERIMYDFINGEIDVLISTTIIETGLDISNANTMIIHDADRLG 858

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
           L+QL+QLRGRVGR   ++   LLY     L + +  RLS ++   D   GF IA  DL+ 
Sbjct: 859 LSQLYQLRGRVGRSNRMAYAFLLYKRDKLLKEVAEKRLSAIREFTDLGSGFKIAMRDLEI 918

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           R  G +LG +Q G  + +    +L+  +L  A K  K  + ++P  T+V
Sbjct: 919 RGAGNLLGAEQHGHMEAV--GYDLYCKMLNEAVKHLKGEVEEEPYTTTV 965


>gi|325128294|gb|EGC51178.1| transcription-repair coupling factor [Neisseria meningitidis N1568]
          Length = 1305

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 150/420 (35%), Positives = 232/420 (55%), Gaps = 17/420 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G Q  ++AP 
Sbjct: 758  YEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPT 817

Query: 331  GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IGTH L QD 
Sbjct: 818  TLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIGTHKLVQDD 876

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G  D S IT
Sbjct: 877  IKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLIT 936

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P+ R  +KT + P +    V E +   L  G + +++  +++        ++ ER  +
Sbjct: 937  TAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIENMRERLET 990

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+ III  A+
Sbjct: 991  LLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRAD 1048

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
             FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF +A +DL+
Sbjct: 1049 KFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLE 1108

Query: 627  QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             R  GEILG  QSG  + +     L+  +L+ A +D K      PDL +  G +  I L+
Sbjct: 1109 IRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GHQPDLDAPLGITTEIKLH 1164


>gi|255318947|ref|ZP_05360172.1| transcription-repair coupling factor [Acinetobacter radioresistens
           SK82]
 gi|262378317|ref|ZP_06071474.1| transcription-repair coupling factor [Acinetobacter radioresistens
           SH164]
 gi|255303964|gb|EET83156.1| transcription-repair coupling factor [Acinetobacter radioresistens
           SK82]
 gi|262299602|gb|EEY87514.1| transcription-repair coupling factor [Acinetobacter radioresistens
           SH164]
          Length = 1153

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 147/430 (34%), Positives = 228/430 (53%), Gaps = 23/430 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    R+ L     +A ++  +  R+  K   G    ++  +  +      +  T  Q +
Sbjct: 555 WNKAKRKALEQIHDVAAELLHIQARRHAKP--GFAFEIDQSLYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM +   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLYDMQKAEPMDRLVCGDVGFGKTEVAMRAAFVAVQNNKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K ++ +A G+  I+IGTH L Q+++Q+  L L+I
Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKAHVKNIQDLADGKVDIVIGTHKLLQENVQFKDLGLMI 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T +       I E I R    L  G + Y++  +++  E+   N R++V           
Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVDSIERTAENIRALVPE--------- 840

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ IIIE A+  GLAQ
Sbjct: 841 ARVAVAHGQMRERELEQVMQQFYHKQYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQ 900

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL      L  ++  RL  ++   N   GF++A EDL+ R  
Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVPSIKALKGDAEKRLDAIQRASNLGAGFMLATEDLEIRGA 960

Query: 631 GEILGIKQSG 640
           GE+LG +QSG
Sbjct: 961 GELLGEQQSG 970


>gi|148270474|ref|YP_001244934.1| transcription-repair coupling factor [Thermotoga petrophila RKU-1]
 gi|147736018|gb|ABQ47358.1| transcription-repair coupling factor [Thermotoga petrophila RKU-1]
          Length = 893

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 135/409 (33%), Positives = 236/409 (57%), Gaps = 17/409 (4%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           ++  L MR+Q  + + +P + E  + +K   + P+  T  Q+ +I+++L D++ +  M R
Sbjct: 338 ELVELYMRRQEIQGLSLPGDPE--LEEKFAESFPYIETPDQQQSIEEVLSDLASEKPMDR 395

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L GD G GKT VAL A   AV +G Q  ++ P  +LA+QHYE  K+  +   + VE++ 
Sbjct: 396 LLCGDAGVGKTEVALRAAFRAVASGKQVAVLVPTTVLARQHYENFKERMEPFGVKVELLD 455

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
            +     +++ +E++  G+  IIIGTH+L  + I++  L LVI+DE+ +FGV+Q+ +  +
Sbjct: 456 SSRTPREKKEIIEKLKKGEIDIIIGTHSLLNERIEFSDLGLVIIDEEQKFGVEQKERFKK 515

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
              + +VL ++ATPIPRTL +   G  D S I   P GRKP+   +   +  D++++   
Sbjct: 516 LRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVYVYVAEYS--DDLVKGAV 573

Query: 477 V-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           +  ++ G +  ++  ++EE        + E F  L   F    IA+ HG+MS    E ++
Sbjct: 574 IREINRGGQVIYVHNRVEE--------LPEVFEKLKRMFPELEIAVAHGKMSRRTMERIV 625

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G   +L+ TT+IE G+D+ +A+ +I+++A  +GL+QL+QLRGRVGR +  +    
Sbjct: 626 HEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLSQLYQLRGRVGRSDRRAFAYF 685

Query: 595 LYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           LY     +++  RL VLK+      G  IA +D++ R  G++LG++Q G
Sbjct: 686 LYPKGTPRSALERLKVLKSYTGFGSGLQIALKDMELRGVGDVLGLEQHG 734


>gi|254673347|emb|CBA08563.1| transcription-repair coupling factor [Neisseria meningitidis
            alpha275]
          Length = 1375

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 235/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 820  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 879

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 880  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGLADGTVDIVIG 938

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD+I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 939  THKLVQDNIRFKSLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 998

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 999  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 1052

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 1053 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1110

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 1111 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1170

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1171 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1226

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1227 ITTEIKLH 1234


>gi|15677148|ref|NP_274301.1| transcription-repair coupling factor [Neisseria meningitidis MC58]
 gi|7226520|gb|AAF41657.1| transcription-repair coupling factor [Neisseria meningitidis MC58]
          Length = 1379

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 150/420 (35%), Positives = 233/420 (55%), Gaps = 17/420 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G Q  ++AP 
Sbjct: 832  YEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPT 891

Query: 331  GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IGTH L QD 
Sbjct: 892  TLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIGTHKLVQDD 950

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G  D S IT
Sbjct: 951  IKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLIT 1010

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P+ R  +KT + P +    V E +   L  G + +++  +++        ++ ER  +
Sbjct: 1011 TAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIENMRERLET 1064

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+ III  A+
Sbjct: 1065 LLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRAD 1122

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
             FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF +A +DL+
Sbjct: 1123 KFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLE 1182

Query: 627  QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G +  I L+
Sbjct: 1183 IRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1238


>gi|237738602|ref|ZP_04569083.1| transcription-repair coupling factor [Fusobacterium sp. 2_1_31]
 gi|229424085|gb|EEO39132.1| transcription-repair coupling factor [Fusobacterium sp. 2_1_31]
          Length = 979

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 137/375 (36%), Positives = 218/375 (58%), Gaps = 13/375 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF+ T  Q  AI+D+ +DM     M R++ GDVG GKT VA+ A   A+    Q V++ P
Sbjct: 452 PFTETPGQLKAIEDVKRDMESGKVMDRLVCGDVGYGKTEVAIRAAFKAIMDEKQVVLLVP 511

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHYE   +  +N  I +EI++    +  + +++++I +G A +IIGTH L  D 
Sbjct: 512 TTVLAEQHYERFSERFKNYPINIEILSRVQTKKEQEESIKKIENGSADLIIGTHRLLSDD 571

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+Y  + L+I+DE+ +FGV+ + KL +      +L +TATPIPRTL L+ LG  D+S I 
Sbjct: 572 IKYNDIGLLIIDEEQKFGVKAKEKLKKLKGDIDILTLTATPIPRTLNLSLLGIRDLSIID 631

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
             P GR+ I+T  I  N+ D + + +   +S   + ++I   ++  E K    R ++  +
Sbjct: 632 TSPEGRQKIQTEYIDNNK-DLIRDIIITEVSREGQVFYIFNSVKRIEMKSKELRELLPEY 690

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                     +  IHG+M   D +  + +F+NG   +LIATT+IE GID+ +A+ +IIE 
Sbjct: 691 --------IKVDYIHGQMLARDIKRAIHNFENGNTDVLIATTIIENGIDIENANTMIIEG 742

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDL 625
            E  GL+Q++QLRGR+GR  + S C +L +   +KN+  R   ++  ++  G  ++ ED 
Sbjct: 743 VEKLGLSQVYQLRGRIGRSNKKSYCYMLMNENKTKNAQKREESIREFDNLTGIDLSMEDS 802

Query: 626 KQRKEGEILGIKQSG 640
           K R  GEILG KQ G
Sbjct: 803 KIRGVGEILGEKQHG 817


>gi|121634996|ref|YP_975241.1| transcription-repair coupling factor [Neisseria meningitidis FAM18]
 gi|120866702|emb|CAM10454.1| transcription-repair coupling factor [Neisseria meningitidis FAM18]
 gi|325138289|gb|EGC60858.1| transcription-repair coupling factor [Neisseria meningitidis ES14902]
          Length = 1375

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 235/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 820  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 879

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 880  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGLADGTVDIVIG 938

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD+I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 939  THKLVQDNIRFKSLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 998

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 999  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 1052

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 1053 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1110

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 1111 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1170

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1171 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1226

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1227 ITTEIKLH 1234


>gi|300114141|ref|YP_003760716.1| transcription-repair coupling factor [Nitrosococcus watsonii C-113]
 gi|299540078|gb|ADJ28395.1| transcription-repair coupling factor [Nitrosococcus watsonii C-113]
          Length = 1158

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 148/424 (34%), Positives = 230/424 (54%), Gaps = 22/424 (5%)

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           ARER+   ++ A  +A+   R   KK    P+           R  PF  T  Q  AI+ 
Sbjct: 567 ARERVR--DVAAELLAIYAQRAARKKP---PLPTPDSHYAAFARAFPFEETPDQADAIQA 621

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           ++ D++    M R++ GDVG GKT VA+ A     +AG Q  ++ P  +LAQQHY+  K 
Sbjct: 622 VIADLTSDQPMDRLVCGDVGFGKTEVAMRAAFIVSQAGKQVAVLVPTTLLAQQHYQSFKD 681

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
              +    VE+I+    +  +   + RIA G+A I+IGTH L Q++I +  L LVI+DE+
Sbjct: 682 RFADWPARVEVISRFSSRKEQEAVINRIADGRADIVIGTHKLLQENIHFKNLGLVIIDEE 741

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           HRFGV+Q+ ++        +L +TATPIPRTL ++     D+S I   PA R  IKT + 
Sbjct: 742 HRFGVRQKERMKALRAEVDILTLTATPIPRTLHMSLSNLRDLSIIATPPARRLAIKTFVR 801

Query: 464 PINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
             N  D ++ E L   +  G + Y++  ++E     +   + +R  +L     + + I H
Sbjct: 802 QWN--DNLLREALLREIKRGGQVYFLHNEVE-----SINKMAQRIQALFPE--AKVGIAH 852

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M + + E  M +F +    +L+ TT+IE GID+  A+ III  A+  GLAQL+QLRGR
Sbjct: 853 GQMRERELEQTMLNFYHRRFNILVCTTIIETGIDIPSANTIIIHRADKLGLAQLYQLRGR 912

Query: 583 VGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636
           VGR    +   L+  PP   ++ ++  RL  +++ E+   GF +A  D++ R  GE+LG 
Sbjct: 913 VGRSHHRAYAYLIV-PPRSVMTADAVKRLEAIESLEELGAGFTLASHDMEIRGAGELLGK 971

Query: 637 KQSG 640
            QSG
Sbjct: 972 DQSG 975


>gi|227432633|ref|ZP_03914609.1| transcription-repair coupling factor [Leuconostoc mesenteroides
            subsp. cremoris ATCC 19254]
 gi|227351603|gb|EEJ41853.1| transcription-repair coupling factor [Leuconostoc mesenteroides
            subsp. cremoris ATCC 19254]
          Length = 1179

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 150/465 (32%), Positives = 253/465 (54%), Gaps = 26/465 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A  +  L  +++ ++    P +   +I  K   +  +  T  Q 
Sbjct: 567  EWAKTKRQVAAKIEDIADDLLELYAKREAQQGYVFPPDDHAQI--KFDDSFGYPETPDQI 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I  DM +   M R+L GDVG GKT VAL A+  A  +G Q   +AP  IL QQHY
Sbjct: 625  RSIEEIKVDMQKLRPMDRLLVGDVGFGKTEVALRAVFKAAHSGKQVAFLAPTTILVQQHY 684

Query: 339  E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E  + +++   +I + +++        +  +E++ + +  +++GTH L    + +  L L
Sbjct: 685  ETMLARFSDFPEIKIGVLSRFQTPTQNKMIIEQLQNHEIDVVVGTHRLLSKDVDFSDLGL 744

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +I+DE+ RFGV+ + +L Q  T+  VL +TATPIPRTL +  +G  D+S I   PA R P
Sbjct: 745  LIIDEEQRFGVKHKERLKQLRTSVDVLTLTATPIPRTLNMAMVGARDLSVIETPPANRYP 804

Query: 458  IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            I+T ++ ++   + + IE  K +   G+  Y         + ++   +V +   L    +
Sbjct: 805  IQTYVLAMDWKIVRDAIE--KEIARNGQVFYL------HNRVADLDRIVSQIEELIP--S 854

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + +A IHG+MS+   ES++  F NG   +L+ TT+IE G+D+ +A+ +I+ENA+H GLAQ
Sbjct: 855  ARVAAIHGQMSETQLESILYDFLNGQYDVLVTTTIIETGVDIPNANTLIVENADHMGLAQ 914

Query: 576  LHQLRGRVGRGEEISSCILLY---HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            L+QLRGRVGR   ++     Y     P S+ +  RL  +++ TE   GF IA  DL  R 
Sbjct: 915  LYQLRGRVGRSTRLAYAYFTYPFTRTP-SEEAEKRLEAMRDFTELGSGFRIAMRDLSIRG 973

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQDPD 672
             G++LG +Q G    +    +++  +L+  +A+K  K + T  P+
Sbjct: 974  AGDLLGKQQHGFIDSV--GYDMYTQMLKDTVAQKQGKQVTTSQPE 1016


>gi|187250582|ref|YP_001875064.1| transcription-repair coupling factor [Elusimicrobium minutum
           Pei191]
 gi|186970742|gb|ACC97727.1| Transcription-repair coupling factor [Elusimicrobium minutum
           Pei191]
          Length = 1044

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 135/421 (32%), Positives = 225/421 (53%), Gaps = 42/421 (9%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P+  + ++  +   + P+  T  Q  AI +IL D++++  M R+L GDVG GKT VA+ A
Sbjct: 456 PLTGDAQLEAEFADSFPYIQTPDQSQAISEILDDLTRQKTMDRVLVGDVGFGKTEVAMRA 515

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +     +  Q +++ P  ILA QHY+   K   +  + VE+++    +A ++  +E+I  
Sbjct: 516 VMRTALSSKQVLVLVPTTILAAQHYKTFVKRMASFPVSVEMLSRFQTKAEQKIIVEKIRK 575

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G   I++GTH L    I +  L LVI+DE+HRFGV+Q+ K+  K    H L+++ATPIPR
Sbjct: 576 GTVDIVVGTHRLLSKDISFANLGLVIIDEEHRFGVKQKEKIKAKTAGVHTLMLSATPIPR 635

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL  +     ++S I   P GR P+KT++ P N  D     ++  +  G + Y++  +++
Sbjct: 636 TLNQSLSSLRNLSLIETPPQGRMPVKTIVTPWNN-DLAANAVRQEIGRGGQVYFVYNRVQ 694

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                +  S +E    L     + I + HG+M++   E  + +F N    +L+A+T+IE 
Sbjct: 695 -----SMESRLELLKRLVPE--ARICMAHGQMNETALEKTLWAFYNHEYDILLASTIIES 747

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL------------- 600
           G+D+ +A+ +IIE+A+ FGLAQL+QLRGR+GRG+  + C  L+HP               
Sbjct: 748 GLDISNANTLIIESAQDFGLAQLYQLRGRIGRGDRKAYC-YLFHPDWLFQKPKDNIEREN 806

Query: 601 -----------------SKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
                            ++ +  RLS L    +   GF +A  D++ R  GE+LG +Q G
Sbjct: 807 NFEDLKAFLTKKKEADPTETAKKRLSALMEFSELGSGFKLALRDMEIRGAGELLGTRQHG 866

Query: 641 M 641
            
Sbjct: 867 F 867


>gi|225024865|ref|ZP_03714057.1| hypothetical protein EIKCOROL_01753 [Eikenella corrodens ATCC 23834]
 gi|224942394|gb|EEG23603.1| hypothetical protein EIKCOROL_01753 [Eikenella corrodens ATCC 23834]
          Length = 1271

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 716  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 775

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 776  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKVALEGMADGTVDIVIG 834

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 835  THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 894

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 895  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 948

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 949  NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1006

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 1007 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1066

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1067 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1122

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1123 ITTEIKLH 1130


>gi|325142431|gb|EGC64835.1| transcription-repair coupling factor [Neisseria meningitidis
            961-5945]
 gi|325198436|gb|ADY93892.1| transcription-repair coupling factor [Neisseria meningitidis G2136]
          Length = 1375

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 235/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 820  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 879

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 880  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGLADGTVDIVIG 938

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD+I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 939  THKLVQDNIRFKSLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 998

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 999  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 1052

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 1053 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1110

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 1111 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1170

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1171 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1226

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1227 ITTEIKLH 1234


>gi|257126999|ref|YP_003165113.1| transcription-repair coupling factor [Leptotrichia buccalis
           C-1013-b]
 gi|257050938|gb|ACV40122.1| transcription-repair coupling factor [Leptotrichia buccalis
           C-1013-b]
          Length = 1068

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 141/381 (37%), Positives = 214/381 (56%), Gaps = 20/381 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           N PF  T+ Q +AI D+ +DM     M RI+ GDVG GKT VA+ A   A++ G Q V++
Sbjct: 523 NFPFEETEDQRNAINDVKKDMESPQIMDRIVCGDVGYGKTEVAMRAAFKAIDNGKQVVMV 582

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  +LA+QH+E  K+  +N  I +E ++  + ++     L+ + +G   ++IGTH L  
Sbjct: 583 APTTVLAEQHFERFKRRFENYPITIENLS-RLTKSKSTDILKNLKNGIIDLVIGTHRLLS 641

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +Q+  L L+I+DE+ +FGV+ + KL  +     VL +TATPIPRTL L  LG  +IS 
Sbjct: 642 DDVQFKNLGLLIIDEEQKFGVKAKEKLKSQREKLDVLTLTATPIPRTLNLAMLGIREISI 701

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R PI T I+     DE I ++ ++  LS   + ++I   +        +++ E
Sbjct: 702 IDTPPTNRLPIITEILD---WDEEIIKMAILRELSRDGQVFYIYNDV--------KNMKE 750

Query: 506 RFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +   L E     + I  I+G++   + +  +  F+NG   +LIA+T+IE GIDV +A+ I
Sbjct: 751 KLKELKEMLPDFVKIEFINGQLPPKEIKDKLLRFENGQFDILIASTIIENGIDVGNANTI 810

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE----DGFL 619
           +IEN    GL+Q++QL+GRVGR      C LL    ++K    +   +   E     GF 
Sbjct: 811 LIENFTGLGLSQVYQLKGRVGRSNRQGYCYLLKTRNITKQGRQKEESMLKVEGIKSGGFQ 870

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           I+ EDLK R  GEILG KQ G
Sbjct: 871 ISMEDLKIRGAGEILGDKQHG 891


>gi|213612520|ref|ZP_03370346.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 542

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 207/369 (56%), Gaps = 19/369 (5%)

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 2   AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 61

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 62  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 121

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 122 VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 181

Query: 460 TVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           T    +   D ++ R + +L E   G + Y++   +E     N +   ER   L     +
Sbjct: 182 TF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--A 230

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQL
Sbjct: 231 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 290

Query: 577 HQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           HQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED   GF +A  DL+ R  G
Sbjct: 291 HQLRGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDLGAGFALATHDLEIRGAG 350

Query: 632 EILGIKQSG 640
           E+LG +QSG
Sbjct: 351 ELLGEEQSG 359


>gi|254805085|ref|YP_003083306.1| transcription-repair coupling factor [Neisseria meningitidis alpha14]
 gi|254668627|emb|CBA06236.1| transcription-repair coupling factor [Neisseria meningitidis alpha14]
          Length = 1375

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 150/420 (35%), Positives = 233/420 (55%), Gaps = 17/420 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G Q  ++AP 
Sbjct: 828  YEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPT 887

Query: 331  GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IGTH L QD 
Sbjct: 888  TLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIGTHKLVQDD 946

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G  D S IT
Sbjct: 947  IKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLIT 1006

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P+ R  +KT + P +    V E +   L  G + +++  +++        ++ ER  +
Sbjct: 1007 TAPSRRLSVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIENMRERLET 1060

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+ III  A+
Sbjct: 1061 LLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRAD 1118

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
             FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF +A +DL+
Sbjct: 1119 KFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLE 1178

Query: 627  QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G +  I L+
Sbjct: 1179 IRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1234


>gi|288575748|ref|ZP_06393934.1| transcription-repair coupling factor [Neisseria mucosa ATCC 25996]
 gi|288567230|gb|EFC88790.1| transcription-repair coupling factor [Neisseria mucosa ATCC 25996]
          Length = 724

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 169 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 228

Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 229 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKSALEGMADGTVDIVIG 287

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 288 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 347

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 348 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 401

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 402 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 459

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
            III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 460 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 519

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 520 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 575

Query: 679 QSIRILLY 686
            +  I L+
Sbjct: 576 ITTEIKLH 583


>gi|237743139|ref|ZP_04573620.1| transcription-repair coupling factor [Fusobacterium sp. 7_1]
 gi|229433435|gb|EEO43647.1| transcription-repair coupling factor [Fusobacterium sp. 7_1]
          Length = 979

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/375 (37%), Positives = 222/375 (59%), Gaps = 13/375 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF+ T +Q  AI+D+ +DM     M R++ GDVG GKT VA+ A   AV    Q +++ P
Sbjct: 452 PFTETPAQLKAIEDVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDSKQVILLVP 511

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHYE   +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D 
Sbjct: 512 TTVLAEQHYERFSERFKNYPVHIEILSRVQSKKEQVESLKRIENGSADLVIGTHRLLSDD 571

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  + L+I+DE+ +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I 
Sbjct: 572 IKFKDVGLLIIDEEQKFGVKAKEKLKKIKGDIDVLTLTATPIPRTLNLSLLGIRDLSVID 631

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P GR+ I T  I  N+  I ++I  L  +  EG + ++I   + ++ ES  + + E  
Sbjct: 632 TSPEGRQKIHTEYIDNNKNLIKDII--LSEISREG-QVFYIFNSV-KRIESKVKEIRE-- 685

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L E+    +  IHG+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +IIE 
Sbjct: 686 -LLPEYI--KVDYIHGQMLPRDIKKNIQEFENGNIDVLVATTIIENGIDIENANTMIIEG 742

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDL 625
            E  GL+Q++QLRGR+GR  + S C +L +   +KN+  R   ++  ++  G  +A ED 
Sbjct: 743 VEKLGLSQVYQLRGRIGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGLDLAMEDS 802

Query: 626 KQRKEGEILGIKQSG 640
           K R  GEILG KQ G
Sbjct: 803 KIRGVGEILGEKQHG 817


>gi|161870155|ref|YP_001599325.1| transcription-repair coupling factor [Neisseria meningitidis 053442]
 gi|161595708|gb|ABX73368.1| transcription-repair coupling factor [Neisseria meningitidis 053442]
          Length = 1371

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 816  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 875

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 876  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 934

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 935  THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 994

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 995  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 1048

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 1049 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1106

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 1107 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1166

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1167 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1222

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1223 ITTEIKLH 1230


>gi|254448008|ref|ZP_05061472.1| transcription-repair coupling factor [gamma proteobacterium
           HTCC5015]
 gi|198262434|gb|EDY86715.1| transcription-repair coupling factor [gamma proteobacterium
           HTCC5015]
          Length = 1162

 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 142/379 (37%), Positives = 213/379 (56%), Gaps = 15/379 (3%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q +AI+ +L D+ +   M R++ GDVG GKT VAL A   A     Q  I+
Sbjct: 610 DFPFEETPDQLNAIEAVLDDLVKIQPMDRVVCGDVGFGKTEVALRAAFVAAMNQKQVCIL 669

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH++       +  I VE ++    +  +   +  +A G+  I+IGTH L Q
Sbjct: 670 VPTTLLAQQHFQNFSDRLADWPIRVESLSRFGSKKQQDAVIADMAEGKVDIVIGTHKLLQ 729

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++ +L LVI+DE+ RFGV+ + K+ Q  +   +L +TATPIPRTL +   G  D+S 
Sbjct: 730 SDIRFKELGLVIIDEEQRFGVRHKEKMKQLRSEVDILTLTATPIPRTLNMAMSGLRDLSI 789

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
           I   P  R  +KT I   N  DE+I E  +  LS G + Y++  ++E     N + +  +
Sbjct: 790 IATPPQRRTGVKTFINEWN--DELIREACQRELSRGGQVYFVHNKVE-----NIQKIAAQ 842

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              +     +++A  HG+MS+ + E VM  F +    LL+ TT+IE GIDV  A+ III 
Sbjct: 843 IEDIVPEARTAVA--HGQMSERELEQVMLDFYHQRVNLLVCTTIIESGIDVPTANTIIIN 900

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGLAQLHQ+RGRVGR    +   L+  P   ++ ++  RL  +++ ED   GF +A
Sbjct: 901 RADRFGLAQLHQMRGRVGRSHHRAYAYLMAPPEKAMTPDAAKRLEAIESLEDLGAGFTLA 960

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  GE+LG +QSG
Sbjct: 961 THDLEIRGAGELLGAEQSG 979


>gi|149182807|ref|ZP_01861269.1| transcription-repair coupling factor [Bacillus sp. SG-1]
 gi|148849474|gb|EDL63662.1| transcription-repair coupling factor [Bacillus sp. SG-1]
          Length = 1177

 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 223/398 (56%), Gaps = 21/398 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   + +G + ++   + P+  T+ Q  +I +I +DM ++  M R+L GDVG GKT VA+
Sbjct: 603 GYAFSPDGDMQREFETSFPYQETEDQLRSIDEIKKDMERERPMDRLLCGDVGYGKTEVAI 662

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV  G Q  ++ P  ILAQQHYE +K+  Q+  + V +++    +  + + ++ I
Sbjct: 663 RAAFKAVVDGKQVALLVPTTILAQQHYETMKERFQDFGLEVGLLSRFRTKKQQTETIKGI 722

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G   +++GTH +    IQY  L L+I+DE+ RFGV  + K+ Q  T   VL +TATPI
Sbjct: 723 KAGTVDVVVGTHRILSKDIQYRDLGLLIIDEEQRFGVTHKEKIKQLKTNIDVLTLTATPI 782

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWIC 489
           PRTL ++ LG  D+S I   P  R P++T ++  N +   E IER    L+   + Y++ 
Sbjct: 783 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGVMMKEAIER---ELARDGQVYFLY 839

Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            ++E  E+K      +V           + +A  HG+M++ + ESV+ SF +G   +L+ 
Sbjct: 840 NRVEDIERKAEEISMLVP---------DARVAFAHGKMNETELESVILSFLDGEFDVLVT 890

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605
           TT+IE G+D+ + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     L++ + 
Sbjct: 891 TTIIETGVDIPNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYSYFTYRKDKVLTEVAE 950

Query: 606 TRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
            RL  +K  TE   GF IA  DL  R  G ILG +Q G
Sbjct: 951 KRLQAIKEFTELGSGFKIAMRDLTIRGAGNILGAQQHG 988


>gi|317970142|ref|ZP_07971532.1| transcription-repair coupling factor [Synechococcus sp. CB0205]
          Length = 1183

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 143/425 (33%), Positives = 230/425 (54%), Gaps = 22/425 (5%)

Query: 249  KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            K  G    V+G    ++  + P+ PT  Q  AI D+ +DM Q   M R++ GDVG GKT 
Sbjct: 589  KAPGFAFPVDGPWQNELEDSFPYEPTPDQVKAIADVKRDMEQPQPMDRLVCGDVGFGKTE 648

Query: 309  VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
            VA+ A+  AV AG Q  ++AP  +LAQQH+  + +      I V ++      + R+   
Sbjct: 649  VAIRAIFKAVTAGKQVAMLAPTTVLAQQHWRSLSERFAPYPIKVSLLNRFRTSSERKVIQ 708

Query: 369  ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            E +  G   +++GTH L     Q+ +L L++VDE+ RFGV Q+ K+        VL ++A
Sbjct: 709  EGLGEGTVDVVVGTHQLLGKGTQFKELGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSA 768

Query: 429  TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            TPIPRTL ++  G  ++S IT  P  R+PIKT +  ++  + V   ++  L  G + +++
Sbjct: 769  TPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDE-EAVRSAIRQELDRGGQIFYV 827

Query: 489  CPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             P++E  E+     R ++     L         + HG+M++ + ES M +F  G   L++
Sbjct: 828  VPRVEGIEEVAEGLRQMIPGLRLL---------VAHGQMAEGELESAMVAFNAGEADLML 878

Query: 547  ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKN 603
             TT++E G+D+   + I+IE+A  FGLAQL+QLRGRVGR   I +   L++P    LS  
Sbjct: 879  CTTIVESGLDIPRVNTILIEDAHKFGLAQLYQLRGRVGR-SGIQAHAWLFYPGDASLSDA 937

Query: 604  SYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLE 657
            +  RL  ++       G+ +A  D++ R  G +LG++QSG  +   F +    L +SL E
Sbjct: 938  ARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAE 997

Query: 658  IARKD 662
            I  +D
Sbjct: 998  IQGQD 1002


>gi|254412667|ref|ZP_05026440.1| transcription-repair coupling factor [Microcoleus chthonoplastes PCC
            7420]
 gi|196180402|gb|EDX75393.1| transcription-repair coupling factor [Microcoleus chthonoplastes PCC
            7420]
          Length = 1192

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 136/410 (33%), Positives = 225/410 (54%), Gaps = 17/410 (4%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            + LL +  Q  +  G     +     ++  + P+ PT  Q  A++D+ +D+     M R+
Sbjct: 612  VDLLKLYAQRSQRSGYAFPEDSSWQDELEESFPYQPTPDQLKAVQDVKRDLESDRPMDRL 671

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GDVG GKT VAL A+   + +G Q   +AP  IL QQHY  +K+      I V ++  
Sbjct: 672  VCGDVGFGKTEVALRAIFKVITSGKQVAFLAPTTILTQQHYHTLKERFAPYPIHVGLLNR 731

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                  R++   R++ G+  +++GTH +   ++++  L +++VDE+ RFGV Q+ K+   
Sbjct: 732  FRTAQERKEIQRRLSTGELDVVVGTHQVLGKTVKFRDLGMLVVDEEQRFGVNQKEKIKTL 791

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             T   VL +TATPIPRTL ++  G  ++S IT  P  R+ IKT + P N  + V   ++ 
Sbjct: 792  KTQVDVLTLTATPIPRTLYMSLSGVREMSLITTPPPSRRSIKTHLAPYN-PEAVRTAIRT 850

Query: 478  VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDS 536
             L  G + +++ P++E         + E    L E   S+ +AI HG+M + + E+ M +
Sbjct: 851  ELDRGGQVFYVVPRVE--------GIEEVATKLREMIPSARLAIAHGQMPEGELEATMLT 902

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F +G   +LI TT+IE G+D+   + I+IE+A+ FGLAQL+QLRGRVGR   + +   L+
Sbjct: 903  FSSGEADILICTTIIESGLDIPRVNTILIEDAQRFGLAQLYQLRGRVGRS-GVQAHAWLF 961

Query: 597  HP---PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
            +P    LS  +  RL  ++       G+ +A  D++ R  G +LG +QSG
Sbjct: 962  YPKQDTLSDAARKRLRAIQEFTQLGSGYQLATRDMEIRGVGNLLGAEQSG 1011


>gi|148266962|ref|YP_001245905.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393008|ref|YP_001315683.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257794256|ref|ZP_05643235.1| transcription-repair coupling factor [Staphylococcus aureus A9781]
 gi|258420806|ref|ZP_05683742.1| transcription-repair coupling factor [Staphylococcus aureus A9719]
 gi|258448018|ref|ZP_05696148.1| transcription-repair coupling factor [Staphylococcus aureus A6224]
 gi|258453836|ref|ZP_05701809.1| transcription-repair coupling factor [Staphylococcus aureus A5937]
 gi|295407393|ref|ZP_06817190.1| transcription-repair coupling factor [Staphylococcus aureus A8819]
 gi|297246473|ref|ZP_06930313.1| transcription-repair coupling factor [Staphylococcus aureus A8796]
 gi|147740031|gb|ABQ48329.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149945460|gb|ABR51396.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257788228|gb|EEV26568.1| transcription-repair coupling factor [Staphylococcus aureus A9781]
 gi|257843198|gb|EEV67611.1| transcription-repair coupling factor [Staphylococcus aureus A9719]
 gi|257858708|gb|EEV81581.1| transcription-repair coupling factor [Staphylococcus aureus A6224]
 gi|257864007|gb|EEV86762.1| transcription-repair coupling factor [Staphylococcus aureus A5937]
 gi|285816202|gb|ADC36689.1| Transcription-repair coupling factor [Staphylococcus aureus
           04-02981]
 gi|294967750|gb|EFG43782.1| transcription-repair coupling factor [Staphylococcus aureus A8819]
 gi|297176660|gb|EFH35922.1| transcription-repair coupling factor [Staphylococcus aureus A8796]
 gi|312828998|emb|CBX33840.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315128631|gb|EFT84634.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329725040|gb|EGG61535.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 1168

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 144/382 (37%), Positives = 213/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++N+  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTENAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|22298495|ref|NP_681742.1| transcription-repair coupling factor [Thermosynechococcus elongatus
           BP-1]
 gi|22294675|dbj|BAC08504.1| transcription-repair coupling factor [Thermosynechococcus elongatus
           BP-1]
          Length = 1142

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 136/409 (33%), Positives = 227/409 (55%), Gaps = 15/409 (3%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + LL +  Q  ++ G     +    +++  + P+ PT  Q  AI+++  DM     M R+
Sbjct: 562 VDLLQLYAQRAQQRGFAFPPDTPWQREMEDSFPYQPTPDQLKAIQEVKADMESDRPMDRL 621

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA+ A+  AV AG Q  ++AP  IL QQHY  +K+      I V ++  
Sbjct: 622 VCGDVGFGKTEVAIRAIFKAVMAGKQVAVLAPTTILTQQHYHTLKERFAPYPIQVGLLNR 681

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
              +  R+  L+++  G+  +++GTH L  +S+++  L L++VDE+ RFGV Q+ K+   
Sbjct: 682 FRSERERQDLLQKLKIGEIDVVVGTHQLLSNSVKFRDLGLLVVDEEQRFGVNQKEKIKAL 741

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            T   VL ++ATPIPRTL +   G  ++S IT  P  R+PI+T + P +  + V   ++ 
Sbjct: 742 KTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIQTHLAPYDP-ETVRSAIRQ 800

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            L  G + +++ P++E        +V  +   +     + I I HG+M++ + ES M  F
Sbjct: 801 ELDRGGQVFYVVPRVE-----GIEAVAAKLQGM--VVGARILIAHGQMAEGELESTMLGF 853

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            NG   +L+ TT+IE G+D+   + I++E+A+ FGLAQL+QLRGRVGR   I +   L++
Sbjct: 854 SNGEADILVCTTIIESGLDIPRVNTILVEDAQRFGLAQLYQLRGRVGRA-GIQAHAWLFY 912

Query: 598 PP---LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           P    L+  +  RL  ++       G+ +A  D++ R  G +LG +Q G
Sbjct: 913 PRQEVLTDAARQRLRAIQEFTQLGSGYQLAIRDMEIRGVGNLLGAQQHG 961


>gi|332971576|gb|EGK10526.1| transcription-repair coupling factor [Kingella kingae ATCC 23330]
          Length = 1126

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 155/452 (34%), Positives = 240/452 (53%), Gaps = 19/452 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ 
Sbjct: 553 LLNLYAQRAAQTGFKFEINELDYQAFADGFGYEETEDQAAAILAVMKDLTQAKPMDRLIC 612

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  +    ++   
Sbjct: 613 GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAKNFADRFADFPVKTAALSRFN 672

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                +  L+ +A+G   I+IGTH L QD I +  L LVI+DE+HRFGV+Q+ +L +   
Sbjct: 673 SSKETKATLDGMANGTVDIVIGTHKLVQDDIVFKNLGLVIIDEEHRFGVRQKEQLKRLRA 732

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKV 477
              +L +TATPIPRTL +   G  D S IT  P+ R  +KT + P +   I E + R   
Sbjct: 733 NVDLLTLTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSIQEAVLR--- 789

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            L  G + +++  +++  +  N R  +E  N L E   + I + HG++ + + E VM  F
Sbjct: 790 ELKRGGQVFFLHNEVDTIE--NMRDKLE--NLLPE---ARIGVAHGQLRERELEQVMRDF 842

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL  
Sbjct: 843 LNQKFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTP 902

Query: 598 PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
             ++K++  RL  +   ++   GF +A +DL+ R  GEILG  QSG  + +     L+  
Sbjct: 903 EFITKDAEKRLDAIAAADELGAGFALAMQDLEIRGAGEILGEGQSG--EMMQVGLTLYTE 960

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
           +L+ A +D K    + PDL +  G S  I L+
Sbjct: 961 MLKQAVRDLKK--GRVPDLDAPLGVSTEIKLH 990


>gi|325200091|gb|ADY95546.1| transcription-repair coupling factor [Neisseria meningitidis H44/76]
          Length = 1379

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 824  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 883

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 884  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 942

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 943  THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 1002

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 1003 LRDFSLITTAPSRRLSVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 1056

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 1057 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1114

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 1115 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1174

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1175 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1230

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1231 ITTEIKLH 1238


>gi|281412781|ref|YP_003346860.1| DEAD/DEAH box helicase domain protein [Thermotoga naphthophila
           RKU-10]
 gi|281373884|gb|ADA67446.1| DEAD/DEAH box helicase domain protein [Thermotoga naphthophila
           RKU-10]
          Length = 893

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 134/409 (32%), Positives = 236/409 (57%), Gaps = 17/409 (4%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           ++  L M++Q  + + +P + E  + +K   + P+  T  Q+ +I+++L D++ +  M R
Sbjct: 338 ELVELYMKRQEAQGLSLPGDPE--LEEKFAESFPYIETPDQQQSIEEVLYDLASEKPMDR 395

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L GD G GKT VAL A   AV +G Q  ++ P  +LA+QHYE  K+  +   + VE++ 
Sbjct: 396 LLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVLARQHYENFKERMETFGVKVELLD 455

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
            +     +++ +E++  G+  IIIGTH+L  + I++  L LVI+DE+ +FGV+Q+ +  +
Sbjct: 456 SSRTAREKKEIIEKLKKGEIDIIIGTHSLLNERIEFSDLGLVIIDEEQKFGVEQKERFKK 515

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
              + +VL ++ATPIPRTL +   G  D S I   P GRKP+   +   +  D++++   
Sbjct: 516 LRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVYVYVAEYS--DDLVKGAV 573

Query: 477 V-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           +  ++ G +  ++  ++EE        + E F  L   F    IA+ HG+MS    E ++
Sbjct: 574 IREINRGGQVIYVHNRVEE--------LPEVFEKLKRMFPELEIAVAHGKMSRRTMERIV 625

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G   +L+ TT+IE G+D+ +A+ +I+++A  +GL+QL+QLRGRVGR +  +    
Sbjct: 626 HEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLSQLYQLRGRVGRSDRRAFAYF 685

Query: 595 LYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           LY     +++  RL VLK+      G  IA +D++ R  G++LG++Q G
Sbjct: 686 LYPKGTPRSALERLKVLKSYTGFGSGLQIALKDMELRGVGDVLGLEQHG 734


>gi|296453487|ref|YP_003660630.1| DEAD/DEAH box helicase domain-containing protein [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296182918|gb|ADG99799.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 877

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 144/338 (42%), Positives = 198/338 (58%), Gaps = 24/338 (7%)

Query: 176 VEALSR-LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            EALS+ +P VLPE + K     K+    AEAF  IH+P     F+    A E L Y+E 
Sbjct: 288 AEALSQSIPDVLPESVRK----AKNLMHRAEAFLAIHDPASTTRFK---EAIETLRYEEA 340

Query: 234 LAGQIALLLMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
              Q +LL  R    K      P+ V   +  + + ++PFS T  Q+  I DI  D++  
Sbjct: 341 FVSQTSLLKARSHAHKSAAHSCPL-VTDSLRDQFIASLPFSLTAGQQQVIHDIAADLAHD 399

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-- 349
             M R+LQG+VGSGKT+VAL AM  AV+AG QAV++AP  +LA+QH E I +  +  +  
Sbjct: 400 WPMQRLLQGEVGSGKTVVALAAMLQAVDAGYQAVLVAPTQVLAEQHAETIGRMVEQLKPA 459

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           I V ++TG M  A RRKAL   + G+  II+ THA F  + Q   L LV++DEQHRFGV+
Sbjct: 460 IPVTLLTGGMKLAARRKALAAASSGEPGIIVATHAAFSKTFQAPHLALVVIDEQHRFGVE 519

Query: 410 QRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+TV+  +N
Sbjct: 520 QRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTVV--VN 577

Query: 467 RID-----EVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D      +   ++  +  G++AY +CP+I+   E N
Sbjct: 578 EADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEGN 615



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 103/193 (53%), Gaps = 2/193 (1%)

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS 
Sbjct: 682 IADRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASC 741

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+
Sbjct: 742 IVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQ 801

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSI 681
            DL+ R  G++LG  QSG    L     + D+ ++  AR  A+ +L  DP+L     Q  
Sbjct: 802 ADLEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAEQLLAADPELAD-EVQLA 860

Query: 682 RILLYLYQYNEAF 694
             +L   + NE F
Sbjct: 861 GAVLDFTRGNETF 873


>gi|4090863|gb|AAC98900.1| transcription-repair coupling factor [Listeria monocytogenes]
          Length = 1190

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T+ Q 
Sbjct: 584  EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 641

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 642  RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 701

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 702  ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 761

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 762  IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 821

Query: 459  KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            +T +   N   + E IER    L+   + Y++  ++E        S+ ++ + +      
Sbjct: 822  QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 870

Query: 517  S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+Q
Sbjct: 871  ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 930

Query: 576  LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
            L+QLRGRVGR   I+    +Y     L + +  RLS +K  TE   GF IA  DL  R  
Sbjct: 931  LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 990

Query: 631  GEILGIKQSG 640
            G ILG +Q G
Sbjct: 991  GNILGAQQHG 1000


>gi|42526796|ref|NP_971894.1| transcription-repair coupling factor [Treponema denticola ATCC
           35405]
 gi|41817111|gb|AAS11805.1| transcription-repair coupling factor [Treponema denticola ATCC
           35405]
          Length = 1155

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 140/378 (37%), Positives = 219/378 (57%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q + I ++ +DM +   M R++ GDVG GKT VA+ A   AV +G Q   ++P
Sbjct: 613 PYEETDDQLTCIAEVKEDMEKPVPMDRLICGDVGYGKTEVAMRAAFKAVMSGKQVAFLSP 672

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             IL +QH+E + K  +N  + +  ++  +P+  ++K LE++  G+  I+IGTH + Q  
Sbjct: 673 TTILTEQHFETLDKRFKNFPVKLARLSRFVPKGEQKKVLEKLKKGEVDILIGTHRIIQKD 732

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+IVDE+ RFGV+ + +L Q       L ++ATPIPRTL ++ L   D+S I 
Sbjct: 733 VVFKDLGLMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLHMSLLKIRDMSVIA 792

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  RKP++TVI   N  ++ EVI R       G + +++  ++E   E+ F       
Sbjct: 793 TPPQNRKPVETVIAEFNAEKVAEVIRRES---ERGGQVFYLHNRVESLDETLF-----ML 844

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            SL       I   HG+MS    E + + F  G  ++LIATT+IE GID+ +A+ III+ 
Sbjct: 845 QSLLPEIM--IETAHGQMSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTIIIDR 902

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+ +G++QL+QLRGRVGR ++ +   LLY     LS+ +  RL V+ + TE   GF IA 
Sbjct: 903 ADMYGVSQLYQLRGRVGRSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFKIAM 962

Query: 623 EDLKQRKEGEILGIKQSG 640
           +D++ R  G +LG +QSG
Sbjct: 963 KDMEIRGAGNLLGREQSG 980


>gi|223983659|ref|ZP_03633835.1| hypothetical protein HOLDEFILI_01116 [Holdemania filiformis DSM
           12042]
 gi|223964356|gb|EEF68692.1| hypothetical protein HOLDEFILI_01116 [Holdemania filiformis DSM
           12042]
          Length = 1147

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 141/408 (34%), Positives = 229/408 (56%), Gaps = 17/408 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++ IG     +  + Q+   +  +  T  Q  A+++I +DM Q   M R+L 
Sbjct: 570 LVKLYSQREENIGYAYGPDTPLQQEFEDDFDYDLTPDQALAVQEIKKDMMQPKPMDRLLC 629

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VAL A   A+  G Q   + P  IL+ QH     K  +N  I +E++   +
Sbjct: 630 GDVGFGKTEVALRAAFKAITEGKQVAFLCPTTILSLQHTATAMKRFENFPIRIEVLNRFV 689

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            ++ +++ L  +  G+  +IIGTH +    +Q++ L L+++DE+ RFGV+ + K+ +   
Sbjct: 690 VESKQKEILRELKEGKVDMIIGTHRILSKDVQFHDLGLLVIDEEQRFGVEHKEKIKEMKE 749

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKV 477
           +  VL ++ATPIPRTL ++ +G   +S++   P+ R P++T +I  NR  + EVIER   
Sbjct: 750 SIDVLSLSATPIPRTLQMSLIGIRSLSQLETPPSNRMPVQTYVIEKNRSLVKEVIER--- 806

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            L+   + +++   I+E       +V  +     +   + IA+ HG+MS  + E VM  F
Sbjct: 807 ELARQGQVFYLFNNIQE-----IYNVARQIK--QDVPEAEIAVAHGKMSRDEIEEVMMQF 859

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +    +LI TT+IE GID+ +A+ I+IENA+ FGLAQL+Q++GRVGR + I+   L+  
Sbjct: 860 TDNEVNVLICTTIIETGIDIPNANTILIENADTFGLAQLYQIKGRVGRSDRIAYAYLMVR 919

Query: 598 PPLSKN--SYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
           P    N  +  RL  +K  TE   G+ IA  DL  R  G++LG  QSG
Sbjct: 920 PRKQVNEIAQKRLQAIKEFTELGSGYKIAMRDLTIRGAGDLLGPSQSG 967


>gi|258407227|ref|ZP_05680372.1| transcription-repair coupling factor [Staphylococcus aureus A9763]
 gi|257841185|gb|EEV65634.1| transcription-repair coupling factor [Staphylococcus aureus A9763]
          Length = 1168

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 144/382 (37%), Positives = 213/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQVLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++N+  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTENAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|304387420|ref|ZP_07369611.1| transcription-repair coupling factor [Neisseria meningitidis ATCC
            13091]
 gi|304338513|gb|EFM04632.1| transcription-repair coupling factor [Neisseria meningitidis ATCC
            13091]
          Length = 1301

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 746  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 805

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 806  QVAVLAPTTLLVEQHAQNFSDRFADFPVKVAGLSRFNNSKA-TKAALEGMADGTVDIVIG 864

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 865  THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 924

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 925  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 978

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 979  NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1036

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 1037 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1096

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1097 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1152

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1153 ITTEIKLH 1160


>gi|167836965|ref|ZP_02463848.1| transcription-repair coupling factor [Burkholderia thailandensis
            MSMB43]
          Length = 1189

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 161/431 (37%), Positives = 232/431 (53%), Gaps = 23/431 (5%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 627  KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQ 686

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + FI ++      IVE+      +     A+++I  G   I+IGT
Sbjct: 687  VALLSPTTLLAEQHTQTFIDRFADWPVKIVELSRFKSTK-EVNTAIQQINEGSVDIVIGT 745

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 746  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 805

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500
             D S I   P  R  IKT +      DE + R  ++  L  G + Y++  ++E  +  N 
Sbjct: 806  RDFSVIATAPQKRLAIKTFV---RSEDESVIREAMLRELKRGGQVYFLHNEVETIE--NR 860

Query: 501  RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            R+++E          + IAI HG+M + + E VM  F      +L+ TT+IE GIDV  A
Sbjct: 861  RAMLEALVP-----EARIAIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 915

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
            + II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+  
Sbjct: 916  NTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELG 975

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+
Sbjct: 976  SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTA 1031

Query: 676  VRGQSIRILLY 686
                +  I L+
Sbjct: 1032 PLAATTEINLH 1042


>gi|282896750|ref|ZP_06304758.1| Transcription-repair coupling factor [Raphidiopsis brookii D9]
 gi|281198468|gb|EFA73356.1| Transcription-repair coupling factor [Raphidiopsis brookii D9]
          Length = 1202

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 138/380 (36%), Positives = 212/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+ PT  Q  A++D+ +DM     M R++ GDVG GKT VA+ A+  AV AG Q  ++
Sbjct: 626 SFPYQPTIDQLKAVQDVKRDMESPRPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVALL 685

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  IL QQHY  IK+      I V ++        +R   +R+  G+  I++GTH L  
Sbjct: 686 APTTILTQQHYHTIKERFAPYPIHVGLLNRFRSPEEKRNIQKRLLTGELDIVVGTHQLLG 745

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +Q+  L L+++DE+ RFGV Q+ K+    T   VL ++ATPIPRTL ++  G  ++S 
Sbjct: 746 KGVQFKDLGLLVIDEEQRFGVNQKEKIKTLKTHLDVLTLSATPIPRTLYMSLSGIREMSL 805

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           IT  P  R+PI+T + P+N    V   ++  L  G + +++ P++E  +E+  R      
Sbjct: 806 ITTPPPTRRPIQTHLAPLNP-QIVSSAIRQELDRGGQVFYVVPRVEGIEETTTR------ 858

Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             L E   S    I HG+M +   ES M +F N    +L+ TT+IE G+D+   + I+IE
Sbjct: 859 --LREMIPSGRFVIAHGQMDESQLESTMLTFSNHEADILVCTTIIESGLDIPRVNTILIE 916

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLK---NTEDGFLI 620
           +A  FGL+QL+QLRGRVGR   I +   L++P    LS  +  RL  ++       G+ +
Sbjct: 917 DAHRFGLSQLYQLRGRVGRA-GIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGSGYQL 975

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  D++ R  G +LG +QSG
Sbjct: 976 AMRDMEIRGVGNLLGAEQSG 995


>gi|86606417|ref|YP_475180.1| transcription-repair coupling factor [Synechococcus sp. JA-3-3Ab]
 gi|86554959|gb|ABC99917.1| transcription-repair coupling factor [Synechococcus sp. JA-3-3Ab]
          Length = 1156

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 141/386 (36%), Positives = 214/386 (55%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T  Q  A+++I +DM     M R+L GDVG GKT VA+ A+  AV AG 
Sbjct: 597 QEFEESFPYPLTPDQIRAVQEIKRDMESPRPMDRLLCGDVGFGKTEVAIRAIFKAVTAGK 656

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++AP  IL QQHY  +K+      I V ++        +++ L R+  G+  +I+GT
Sbjct: 657 QVALLAPTTILTQQHYHTLKERFAPYPIQVGLLNRFRTPEEKKEILARLKSGELDVIVGT 716

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L    +Q+  L L+++DE+ RFGV Q+ K+    T   VL +TATPIPRTL +   G 
Sbjct: 717 HQLLGKDVQFRDLGLLVIDEEQRFGVNQKEKIKLLKTQVDVLTLTATPIPRTLYMALSGL 776

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIE--EKKESN 499
            ++S I   P  R+PIKT + P N   EVI   ++  L  G + +++  +IE  E+  + 
Sbjct: 777 REMSLIQTPPPSRRPIKTHLSPYN--PEVIRTAIRQELDRGGQVFYVVNRIEGIEETSAK 834

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R  V           + IAI HG+M + + E+ M +F NG   +L+ TT+IE G+D+  
Sbjct: 835 LREWVP---------GARIAIAHGQMPEGELEATMLAFNNGEIDILVCTTIIESGLDIPR 885

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NT 614
            + I+IENA+ FGLAQL+QLRGRVGR    +   L Y     L++ +  RL  ++     
Sbjct: 886 VNTILIENAQEFGLAQLYQLRGRVGRAGIQAHAWLFYREDGILTEEARKRLQAIQEFTQL 945

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSG 640
             G+ +A  D++ R  G +LG +QSG
Sbjct: 946 GSGYQLALRDMEIRGIGNLLGTQQSG 971


>gi|291517427|emb|CBK71043.1| RecG-like helicase [Bifidobacterium longum subsp. longum F8]
          Length = 877

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 144/338 (42%), Positives = 198/338 (58%), Gaps = 24/338 (7%)

Query: 176 VEALSR-LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            EALS+ +P VLPE + K     K+    AEAF  IH+P     F+    A E L Y+E 
Sbjct: 288 AEALSQSIPDVLPESVRK----AKNLMHRAEAFLAIHDPASTTRFK---EAIETLRYEEA 340

Query: 234 LAGQIALLLMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
              Q +LL  R    K      P+ V   +  + + ++PFS T  Q+  I DI  D++  
Sbjct: 341 FVSQTSLLKARSHAHKSAAHSCPL-VTDSLRDQFIASLPFSLTAGQQQVIHDIAADLAHD 399

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-- 349
             M R+LQG+VGSGKT+VAL AM  AV+AG QAV++AP  +LA+QH E I +  +  +  
Sbjct: 400 WPMQRLLQGEVGSGKTVVALAAMLQAVDAGYQAVLVAPTQVLAEQHAETIGRMVEQLKPA 459

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           I V ++TG M  A RRKAL   + G+  II+ THA F  + Q   L LV++DEQHRFGV+
Sbjct: 460 IPVTLLTGGMKLAARRKALAAASSGEPGIIVATHAAFSKTFQAPHLALVVIDEQHRFGVE 519

Query: 410 QRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+TV+  +N
Sbjct: 520 QRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTVV--VN 577

Query: 467 RID-----EVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D      +   ++  +  G++AY +CP+I+   E N
Sbjct: 578 EADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 615



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 102/193 (52%), Gaps = 2/193 (1%)

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS 
Sbjct: 682 IADRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASC 741

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+
Sbjct: 742 IVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQ 801

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSI 681
            DL+ R  G++LG  QSG    L     + D+ ++  AR  A  +L  DP+L     Q  
Sbjct: 802 ADLEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAGQLLAADPELAG-EVQLA 860

Query: 682 RILLYLYQYNEAF 694
             +L   + NE F
Sbjct: 861 GAVLDFTRGNETF 873


>gi|116871596|ref|YP_848377.1| transcription-repair coupling factor [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|116740474|emb|CAK19594.1| transcription-repair coupling factor [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 1179

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T+ Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   I++GTH L    ++Y  L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDIVVGTHRLLSKDVEYQDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751 VVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +   N   + E IER    L+   + Y++  ++E        S+ ++ + +      
Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+Q
Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR   I+    +Y     L + +  RLS +K  TE   GF IA  DL  R  
Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979

Query: 631 GEILGIKQSG 640
           G ILG +Q G
Sbjct: 980 GNILGAQQHG 989


>gi|160902853|ref|YP_001568434.1| DEAD/DEAH box helicase domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160360497|gb|ABX32111.1| DEAD/DEAH box helicase domain protein [Petrotoga mobilis SJ95]
          Length = 974

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 134/399 (33%), Positives = 220/399 (55%), Gaps = 25/399 (6%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           GI +  + ++ +K     P+  T  QE +IK++++D+  +  M R+L GD G GKT VA+
Sbjct: 423 GIQLFGDPELEEKFKETFPYVETPDQEKSIKEVMRDLESERPMDRLLSGDSGFGKTEVAM 482

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A    V +  Q +++AP  ILA+QHYE  K+   +  I + ++T +  Q  ++   E I
Sbjct: 483 RAAFRTVVSNYQVLLLAPTTILAKQHYENFKQRMDSFGIKIALVTRHKTQKEKKDLFESI 542

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             GQ  I+IGTHAL  D +Q   L LVIVDE+ RFGV Q+ K  + +   + L+M+ATPI
Sbjct: 543 GKGQVDIVIGTHALLSDLLQVKNLGLVIVDEEQRFGVLQKEKFKKLSDGVNFLMMSATPI 602

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL--SEGKKAYWIC 489
           PRTL ++  G  DIS I+  P GR PI+T    I +  + + R  ++   S G +  +I 
Sbjct: 603 PRTLYMSISGLRDISTISTPPVGRLPIQTF---IGKYSDKLVRTAILREKSRGGQVIYIH 659

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-----SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +++E             N LH+   +      IA++HG     +    ++   +G   L
Sbjct: 660 NRVQE------------LNELHKKLRTLIPEIKIAMVHGGTPKKEFIKSINDLYDGNIDL 707

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TT+IE GID+ + + +I+++ E +G++QL+Q++GRVGR    +    L+   ++  +
Sbjct: 708 LLSTTIIENGIDIPNVNTLILDDPERYGISQLYQIKGRVGRSNRRAFVYFLFKKEVTPQT 767

Query: 605 YTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             RL  +K   +   G  +A  DL+ R  G+ILGI+Q G
Sbjct: 768 KKRLEAIKQYNEPGSGLKLALRDLEIRGYGDILGIEQKG 806


>gi|328467970|gb|EGF38997.1| transcription-repair coupling factor [Listeria monocytogenes 1816]
          Length = 1179

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T+ Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +   N   + E IER    L+   + Y++  ++E        S+ ++ + +      
Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+Q
Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR   I+    +Y     L + +  RLS +K  TE   GF IA  DL  R  
Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979

Query: 631 GEILGIKQSG 640
           G ILG +Q G
Sbjct: 980 GNILGAQQHG 989


>gi|307710364|ref|ZP_07646805.1| transcription-repair coupling factor [Streptococcus mitis SK564]
 gi|307618956|gb|EFN98091.1| transcription-repair coupling factor [Streptococcus mitis SK564]
          Length = 1169

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 150/405 (37%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q V++ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTETLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++ ++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIDQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HGRMS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGRMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|93006488|ref|YP_580925.1| transcription-repair coupling factor [Psychrobacter cryohalolentis
            K5]
 gi|92394166|gb|ABE75441.1| transcription-repair coupling factor [Psychrobacter cryohalolentis
            K5]
          Length = 1243

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 157/448 (35%), Positives = 239/448 (53%), Gaps = 25/448 (5%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKIL--RNIPFSPTKSQESAIKDILQDMSQKNRML 295
            +A  L+  Q ++E  + I+ +  I+Q  L      F  T  Q SAI  +++DM Q   M 
Sbjct: 654  VAAELLNIQARREAKVGIHFKIDISQYELFASQFAFEETPDQASAIHAVMEDMKQNQPMD 713

Query: 296  RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            R++ GDVG GKT VA+ A   AV AG Q  ++ P  +LA QH +  +    +  + +E +
Sbjct: 714  RLICGDVGFGKTEVAMRAAFIAVSAGYQVAVLVPTTLLAGQHEDNFRNRFADWPVRIETL 773

Query: 356  TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
            +    + H+   L  +A G+  I+IGTH L Q  +++  L L+IVDE+HRFGV+ + ++ 
Sbjct: 774  SRFGGKKHQDTVLTDLAAGKVDIVIGTHKLLQPDVKFSNLGLMIVDEEHRFGVRHKERIK 833

Query: 416  QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ER 474
               T    + MTATPIPRTL +   G  D+S I   PA R  IKT +  + + D ++ E 
Sbjct: 834  AIQTDVDSMSMTATPIPRTLNMALSGMRDMSIIATPPARRLAIKTFV--MQKTDALMKEA 891

Query: 475  LKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
            +   L  G + Y +   +   E+     R +V           + + + HG+M +   E 
Sbjct: 892  ILRELLRGGQVYLLHNDVASIERMAETIRELVPE---------ARVGVAHGQMQERQLEQ 942

Query: 533  VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            VM  + +    +LI +T+IE GIDV +A+ IIIE A+ FGLAQLHQLRGRVGR    + C
Sbjct: 943  VMQQYYHKKFNVLICSTIIETGIDVPNANTIIIERADKFGLAQLHQLRGRVGRSHHQAYC 1002

Query: 593  ILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             LL      L  ++  RL  ++       GF++A EDL+ R  GEILG +QSG  + +  
Sbjct: 1003 YLLVPSIKGLKGDAKRRLHAIERANTLGAGFMLASEDLEIRGAGEILGKQQSGNMQAIGF 1062

Query: 648  QPELHDSLLEIARKDAKHILTQDPDLTS 675
               L+  +LE A K  K    ++PDL++
Sbjct: 1063 --SLYMDMLERATKAIK--AGKEPDLST 1086


>gi|315037511|ref|YP_004031079.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL
           1112]
 gi|312275644|gb|ADQ58284.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL
           1112]
          Length = 1164

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 146/431 (33%), Positives = 231/431 (53%), Gaps = 21/431 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +K  G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQRQFDDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++     A  ++ +E +  G+  I++GTH L    + +  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLEDGKIDIVVGTHRLLSKDVHFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T +   IP    D  +  +K     G + +++  +I     S+    VE+   L  +  
Sbjct: 801 QTYVMEQIPSVIKDACLREMK----RGGQVFYLHNRI-----SDIDETVEKLQQLIPN-- 849

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+Q
Sbjct: 850 ARIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQ 909

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF IA  DL  R  
Sbjct: 910 LYQLRGRIGRSARLAYAYFLYRPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGA 969

Query: 631 GEILGIKQSGM 641
           G +LG +Q G 
Sbjct: 970 GNMLGAQQHGF 980


>gi|261392435|emb|CAX49980.1| transcription-repair coupling factor (TRCF) [Neisseria meningitidis
            8013]
          Length = 1379

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 153/428 (35%), Positives = 236/428 (55%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 824  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 883

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 884  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 942

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD+I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 943  THKLVQDNIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 1002

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++  +  N R
Sbjct: 1003 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVDTIE--NMR 1059

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              +E    L E   + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 1060 GRLETL--LPE---ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1114

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 1115 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1174

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1175 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1230

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1231 ITTEIKLH 1238


>gi|166364821|ref|YP_001657094.1| transcription-repair coupling factor [Microcystis aeruginosa
           NIES-843]
 gi|166087194|dbj|BAG01902.1| transcription-repair coupling factor [Microcystis aeruginosa
           NIES-843]
          Length = 1160

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 145/434 (33%), Positives = 238/434 (54%), Gaps = 22/434 (5%)

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            K +E T  AR R +  +L    I +   R Q   + G    ++    +++  + P+ PT
Sbjct: 560 GKAWEATK-ARVRKSVKKLAVDLINIYAQRAQ---KSGFAYPMDNPWQRELEDSFPYQPT 615

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIGIL 333
             Q  AI+D+ +D+     M R++ GDVG GKT VA+ A+  AV  G  Q  ++AP  IL
Sbjct: 616 ADQLKAIQDVKRDLESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTTGHKQVALLAPTTIL 675

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            QQHY  +K+      I V ++      + ++  ++R+  G+  I++GT  L   ++++ 
Sbjct: 676 TQQHYHTLKERFAPYPINVGLLNRFRTNSEKKDIVQRLKTGELDIVVGTQLLLSKAVEFK 735

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV Q+ K+    +   VL +TATPIPRTL ++  G  ++S IT  P 
Sbjct: 736 DLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLTATPIPRTLYMSLSGVREMSLITTPPP 795

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLH 511
            R+PI+T +   N  D +   ++  L  G + +++ P+IE  E+K +  + ++       
Sbjct: 796 SRRPIQTHLSSYNS-DVIRTAIRNELDRGGQIFYVVPRIEGIEEKAAAIQGMIP------ 848

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               + IAI HGRM + + E+ M +F NG   +L+ TT++E G+D+   + IIIE+A+ F
Sbjct: 849 ---GARIAIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIEDAQKF 905

Query: 572 GLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLK 626
           GLAQL+QLRGRVGR    +   LLY     L++ +  RL  ++       G+ +A  DL+
Sbjct: 906 GLAQLYQLRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQEFTQLGSGYQLATRDLE 965

Query: 627 QRKEGEILGIKQSG 640
            R  G +LG +QSG
Sbjct: 966 IRGAGNLLGAEQSG 979


>gi|218768305|ref|YP_002342817.1| transcription-repair coupling factor [Neisseria meningitidis Z2491]
 gi|121052313|emb|CAM08643.1| transcription-repair coupling factor [Neisseria meningitidis Z2491]
          Length = 1296

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 150/428 (35%), Positives = 233/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 741  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 800

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 801  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 859

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  + LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 860  THKLVQDDIKFKNVGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 919

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 920  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 973

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 974  NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1031

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 1032 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1091

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K      PDL +  G
Sbjct: 1092 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GHQPDLDAPLG 1147

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1148 ITTEIKLH 1155


>gi|47093156|ref|ZP_00230931.1| transcription-repair coupling factor [Listeria monocytogenes str.
           4b H7858]
 gi|47018463|gb|EAL09221.1| transcription-repair coupling factor [Listeria monocytogenes str.
           4b H7858]
          Length = 1179

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T+ Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +   N   + E IER    L+   + Y++  ++E        S+ ++ + +      
Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+Q
Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR   I+    +Y     L + +  RLS +K  TE   GF IA  DL  R  
Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979

Query: 631 GEILGIKQSG 640
           G ILG +Q G
Sbjct: 980 GNILGAQQHG 989


>gi|254832465|ref|ZP_05237120.1| transcription-repair coupling factor [Listeria monocytogenes
           10403S]
          Length = 1179

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T+ Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +   N   + E IER    L+   + Y++  ++E        S+ ++ + +      
Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+Q
Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR   I+    +Y     L + +  RLS +K  TE   GF IA  DL  R  
Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979

Query: 631 GEILGIKQSG 640
           G ILG +Q G
Sbjct: 980 GNILGAQQHG 989


>gi|327182807|gb|AEA31254.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL
           1118]
          Length = 1164

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 146/431 (33%), Positives = 231/431 (53%), Gaps = 21/431 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +K  G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQRQFDDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++     A  ++ +E +  G+  I++GTH L    + +  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLEDGKIDIVVGTHRLLSKDVHFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T +   IP    D  +  +K     G + +++  +I     S+    VE+   L  +  
Sbjct: 801 QTYVMEQIPSVIKDACLREMK----RGGQVFYLHNRI-----SDIDETVEKLQQLIPN-- 849

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+Q
Sbjct: 850 ARIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQ 909

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF IA  DL  R  
Sbjct: 910 LYQLRGRIGRSARLAYAYFLYRPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGA 969

Query: 631 GEILGIKQSGM 641
           G +LG +Q G 
Sbjct: 970 GNMLGAQQHGF 980


>gi|218514234|ref|ZP_03511074.1| ATP-dependent DNA helicase protein [Rhizobium etli 8C-3]
          Length = 167

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 107/167 (64%), Positives = 136/167 (81%)

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +FKNG  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CI
Sbjct: 1   MMAFKNGETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCI 60

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PL +  + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA  E H 
Sbjct: 61  LLYKGPLGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHA 120

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            LLEIARKDA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+RAG
Sbjct: 121 DLLEIARKDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFLRAG 167


>gi|16802260|ref|NP_463745.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e]
 gi|224503466|ref|ZP_03671773.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           R2-561]
 gi|284803047|ref|YP_003414912.1| transcription-repair coupling factor [Listeria monocytogenes
           08-5578]
 gi|284996188|ref|YP_003417956.1| transcription-repair coupling factor [Listeria monocytogenes
           08-5923]
 gi|16409579|emb|CAD00741.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e]
 gi|284058609|gb|ADB69550.1| transcription-repair coupling factor [Listeria monocytogenes
           08-5578]
 gi|284061655|gb|ADB72594.1| transcription-repair coupling factor [Listeria monocytogenes
           08-5923]
          Length = 1179

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T+ Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +   N   + E IER    L+   + Y++  ++E        S+ ++ + +      
Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+Q
Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR   I+    +Y     L + +  RLS +K  TE   GF IA  DL  R  
Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979

Query: 631 GEILGIKQSG 640
           G ILG +Q G
Sbjct: 980 GNILGAQQHG 989


>gi|47096207|ref|ZP_00233806.1| transcription-repair coupling factor [Listeria monocytogenes str.
           1/2a F6854]
 gi|224500335|ref|ZP_03668684.1| transcription-repair coupling factor [Listeria monocytogenes
           Finland 1988]
 gi|254901001|ref|ZP_05260925.1| transcription-repair coupling factor [Listeria monocytogenes J0161]
 gi|254913931|ref|ZP_05263943.1| transcription-repair coupling factor [Listeria monocytogenes J2818]
 gi|47015455|gb|EAL06389.1| transcription-repair coupling factor [Listeria monocytogenes str.
           1/2a F6854]
 gi|293591949|gb|EFG00284.1| transcription-repair coupling factor [Listeria monocytogenes J2818]
          Length = 1179

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T+ Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +   N   + E IER    L+   + Y++  ++E        S+ ++ + +      
Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+Q
Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR   I+    +Y     L + +  RLS +K  TE   GF IA  DL  R  
Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979

Query: 631 GEILGIKQSG 640
           G ILG +Q G
Sbjct: 980 GNILGAQQHG 989


>gi|218283272|ref|ZP_03489327.1| hypothetical protein EUBIFOR_01916 [Eubacterium biforme DSM 3989]
 gi|218215962|gb|EEC89500.1| hypothetical protein EUBIFOR_01916 [Eubacterium biforme DSM 3989]
          Length = 1131

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 136/427 (31%), Positives = 231/427 (54%), Gaps = 15/427 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +     E +A ++  L  ++   ++IG   + +  + ++      +  T  Q  
Sbjct: 537 WKKTKEKVSKKVEEIAARLVELYAKRN--EDIGFAFSKDDDLQKEFEDAFEYEATPDQIR 594

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A ++I ++M +   M  +L GDVG GKT VA+ A   A+    Q  ++ P  IL+ QHY+
Sbjct: 595 ATEEIKREMEKPKPMDHLLCGDVGFGKTEVAMRAAFKAISNNKQVALLCPTTILSMQHYQ 654

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K  +N    + ++   +      +  + +  GQ  IIIGTH L   S QY  L L+I
Sbjct: 655 TFVKRFENVGANIRVVNRFVATKEINQIKKELEAGQVDIIIGTHKLLNKSFQYKNLGLLI 714

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+ + ++ +   A  VL ++ATPIPRTL ++ +G   IS++   P  R PI+
Sbjct: 715 IDEEQRFGVEHKERIKEMKNAIDVLSLSATPIPRTLQMSLIGVRTISQLNTPPLHRHPIQ 774

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T ++  NR   V E ++  LS G + +++   +     SN  SV +   ++     + +A
Sbjct: 775 TYVME-NRKSVVKEIIQRELSRGGQVFYLYNHV-----SNIYSVAKNIQNMFP--DAKVA 826

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HGRM   D E  M  F+    ++L+ TT+IE G+D+ +A+ +II++A+ FGL+QL+Q+
Sbjct: 827 VAHGRMEKNDIEQTMIDFEQEKYQILVCTTIIETGLDIANANTMIIDDADRFGLSQLYQI 886

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR E+I+ C LL  P   L++ ++ RL  +K   +   G+ +A  DL  R  G++L
Sbjct: 887 RGRVGRREKIAYCYLLVQPQKELTEQAHKRLKAIKEFTSLGSGYKVAMRDLTIRGAGDML 946

Query: 635 GIKQSGM 641
           G +Q+G 
Sbjct: 947 GPQQAGF 953


>gi|254829305|ref|ZP_05233992.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           N3-165]
 gi|258601718|gb|EEW15043.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           N3-165]
          Length = 1179

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T+ Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +   N   + E IER    L+   + Y++  ++E        S+ ++ + +      
Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+Q
Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR   I+    +Y     L + +  RLS +K  TE   GF IA  DL  R  
Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979

Query: 631 GEILGIKQSG 640
           G ILG +Q G
Sbjct: 980 GNILGAQQHG 989


>gi|198282679|ref|YP_002219000.1| transcription-repair coupling factor [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198247200|gb|ACH82793.1| transcription-repair coupling factor [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 1116

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 137/385 (35%), Positives = 215/385 (55%), Gaps = 19/385 (4%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           + +   PF  T  Q+ AI  ++ DM+  + M R++ GDVG GKT VAL A   A  +G Q
Sbjct: 561 EFVSRFPFEETPDQQQAIDAVIADMTSPHPMDRLVCGDVGFGKTEVALRAAFLAAHSGAQ 620

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             ++ P  +LAQQHYE  +       + VE+++        ++ L  ++ G+  I+IGTH
Sbjct: 621 VAVLVPTTLLAQQHYENFRNRCAGLPLRVEVLSRFQNAKTHKQVLTAVSVGEVDILIGTH 680

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L Q  + ++ L L+I+DE+HRFGV+Q+ ++        +L +TATPIPRTL L+  G  
Sbjct: 681 RLLQKDVAFHDLGLLILDEEHRFGVRQKERIKALRAEVDILTLTATPIPRTLNLSLAGLR 740

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFR 501
           D+S I   P  R+P++T  + I     VIE  +  L  G + Y++  ++   E+  +  R
Sbjct: 741 DLSIIATPPQRRQPVRT-FVQIWDDATVIEACQRELHRGGQVYFLHNEVRDIERMAATLR 799

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++           + + + HG+M + + E+VM  F +    +L+ TT+IE GID   A+
Sbjct: 800 RLLP---------EARLRVAHGQMPEGELEAVMLDFYHQRFDILLCTTIIESGIDNPHAN 850

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNTED-- 616
            I+I  A+ FGLAQLHQLRGRVGR  +  +   L+ P L   S ++  RL  +++ ED  
Sbjct: 851 TILINRADKFGLAQLHQLRGRVGRSHQ-RAYAYLFTPDLRAMSDDARRRLDAIQSLEDLG 909

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640
            GF +A  DL+ R  GE+LG +QSG
Sbjct: 910 VGFALASHDLEIRGAGELLGEEQSG 934


>gi|332654772|ref|ZP_08420514.1| transcription-repair coupling factor [Ruminococcaceae bacterium
           D16]
 gi|332516115|gb|EGJ45723.1| transcription-repair coupling factor [Ruminococcaceae bacterium
           D16]
          Length = 1164

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 143/428 (33%), Positives = 230/428 (53%), Gaps = 16/428 (3%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +W  +  R + A  +L  G I L   R+   ++ G   + +    ++      ++ T  Q
Sbjct: 572 DWERAKTRAKKAVQDLAKGLIELYAQRQ---RQPGYAFSPDSPWQREFEEQFEYTETDDQ 628

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              I++I +DM     M R+L GDVG GKT VA  AM   V  G QA ++ P  +LA+QH
Sbjct: 629 LRCIQEIKKDMESPVPMDRLLCGDVGYGKTEVAFRAMMKCVLDGKQAAVLVPTTVLARQH 688

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y    +  Q   + +++++        ++ L ++ +G   I+IGTH LF   +++  L L
Sbjct: 689 YLNALRRFQKYPVNIDVVSRFRTPTQMKETLRKVENGGVDILIGTHRLFNKDVKFKDLGL 748

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           ++VDE+ RFGVQ + KL +      VL ++ATPIPRTL +   G  D+S + E PA R P
Sbjct: 749 LVVDEEQRFGVQHKEKLKETFRQVDVLTLSATPIPRTLNMAMSGIRDMSTLEEPPADRLP 808

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           ++T ++  N    V + ++  L  G + Y+    +  + E+  R+       L E  T++
Sbjct: 809 VQTYVLEHN-WPVVADAMRRELERGGQVYY----LHNRVETIDRTAARIQQMLGE--TAA 861

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + + HG+MS    + VM    +G   +L+ TT+IE GID+ +A+ +IIE+A+H GLAQLH
Sbjct: 862 VGVAHGKMSQEAIDDVMSRMTDGELNVLVCTTIIETGIDLPNANTLIIEDADHLGLAQLH 921

Query: 578 QLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR    +   L Y     L++ +  RL+ ++   +   GF IA  DL+ R  G 
Sbjct: 922 QLRGRVGRSNRRAYAYLTYRRGKVLTEVAAKRLAAIREFAEFGSGFKIAMRDLEIRGAGN 981

Query: 633 ILGIKQSG 640
           +LG +QSG
Sbjct: 982 VLGPEQSG 989


>gi|255520464|ref|ZP_05387701.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J1-175]
          Length = 1179

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T+ Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +   N   + E IER    L+   + Y++  ++E        S+ ++ + +      
Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+Q
Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR   I+    +Y     L + +  RLS +K  TE   GF IA  DL  R  
Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979

Query: 631 GEILGIKQSG 640
           G ILG +Q G
Sbjct: 980 GNILGAQQHG 989


>gi|291296005|ref|YP_003507403.1| transcription factor CarD [Meiothermus ruber DSM 1279]
 gi|290470964|gb|ADD28383.1| transcription factor CarD [Meiothermus ruber DSM 1279]
          Length = 987

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 144/432 (33%), Positives = 236/432 (54%), Gaps = 27/432 (6%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK---ILRNIPFSPTK 275
           EW   +RE+ A D   A ++A  L+    K+E   P    G + +    I +N PF  T 
Sbjct: 402 EWKR-SREKAAKD---AEELAQRLLVLHAKRE-ATPGRAFGPLPEWDVLIEQNFPFELTP 456

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q  A+++ L+D+     M R++ GDVG GKT VAL A    V  G Q  ++ P  +LA+
Sbjct: 457 DQRKALEETLRDLEAPRPMERLISGDVGFGKTEVALRAAFRVVGHGAQVAVLVPTTLLAE 516

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QH E  +K  +   + V  ++    +   R+ L  +  G   I+IGTH L    +++  L
Sbjct: 517 QHKETFQKRLEGLPVRVAALSRFTSERETREVLRGLEQGTVDIVIGTHRLLSPDVRFKDL 576

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L++VDE+HRFGV Q+ ++ +   A   L ++ATPIPR+L    +G  D+S I   P GR
Sbjct: 577 GLLVVDEEHRFGVGQKERIRELKEAVDTLYLSATPIPRSLYSALVGLRDLSSIQTPPPGR 636

Query: 456 KPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           KPI+T++ P    D  + R  ++  L  G KA+++  ++         +++ R   L   
Sbjct: 637 KPIRTLLAP---YDPALVRQGIMDELERGGKAFYVHDRVA--------TILARRRYLEAL 685

Query: 514 FTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +   ++HG+M + + E  M +F  G   +L+ATT+IE G+D+ +A+ I++E A+  G
Sbjct: 686 VPEARFGVVHGQMPEAEVEETMLAFAEGAFDVLLATTIIESGLDIPEANTILVERADKLG 745

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           LA L+QLRGRVGR ++  +   L+HP  L++ +  RL+ + +  D   G L+AE+D++ R
Sbjct: 746 LAALYQLRGRVGRRDQ-EAWAYLFHPLRLTEGAERRLAAIADLSDLGSGHLLAEKDMEIR 804

Query: 629 KEGEILGIKQSG 640
             G +LG +Q G
Sbjct: 805 GVGNLLGPEQHG 816


>gi|46906446|ref|YP_012835.1| transcription-repair coupling factor [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|226222843|ref|YP_002756950.1| transcription-repair coupling factor [Listeria monocytogenes
           Clip81459]
 gi|254825872|ref|ZP_05230873.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J1-194]
 gi|254854444|ref|ZP_05243792.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           R2-503]
 gi|254933054|ref|ZP_05266413.1| transcription-repair coupling factor [Listeria monocytogenes
           HPB2262]
 gi|300766347|ref|ZP_07076306.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           N1-017]
 gi|46879710|gb|AAT03012.1| transcription-repair coupling factor [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|225875305|emb|CAS04002.1| transcription-repair coupling factor [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258607844|gb|EEW20452.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           R2-503]
 gi|293584612|gb|EFF96644.1| transcription-repair coupling factor [Listeria monocytogenes
           HPB2262]
 gi|293595111|gb|EFG02872.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J1-194]
 gi|300512946|gb|EFK40034.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           N1-017]
 gi|332310623|gb|EGJ23718.1| Transcription-repair-coupling factor [Listeria monocytogenes str.
           Scott A]
          Length = 1179

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T+ Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +   N   + E IER    L+   + Y++  ++E        S+ ++ + +      
Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+Q
Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR   I+    +Y     L + +  RLS +K  TE   GF IA  DL  R  
Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979

Query: 631 GEILGIKQSG 640
           G ILG +Q G
Sbjct: 980 GNILGAQQHG 989


>gi|325204285|gb|ADY99738.1| transcription-repair coupling factor [Neisseria meningitidis
            M01-240355]
          Length = 1374

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 152/420 (36%), Positives = 234/420 (55%), Gaps = 17/420 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G Q  ++AP 
Sbjct: 827  YEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPT 886

Query: 331  GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IGTH L QD 
Sbjct: 887  TLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIGTHKLVQDD 945

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G  D S IT
Sbjct: 946  IKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLIT 1005

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P+ R  +KT + P +    V E +   L  G + +++  +++  +  N R  +E    
Sbjct: 1006 TAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVDTIE--NMRGRLETL-- 1060

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            L E   + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+ III  A+
Sbjct: 1061 LPE---ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRAD 1117

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
             FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF +A +DL+
Sbjct: 1118 KFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLE 1177

Query: 627  QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G +  I L+
Sbjct: 1178 IRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1233


>gi|229825975|ref|ZP_04452044.1| hypothetical protein GCWU000182_01339 [Abiotrophia defectiva ATCC
           49176]
 gi|229789717|gb|EEP25831.1| hypothetical protein GCWU000182_01339 [Abiotrophia defectiva ATCC
           49176]
          Length = 1184

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 140/378 (37%), Positives = 211/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AIKD+  DM     M R++ GDVG GKT VA+ A   AV  G Q V++ P
Sbjct: 626 PYDETDDQLNAIKDVKADMESIKIMDRLVCGDVGFGKTEVAIRAAFKAVSEGKQVVMLVP 685

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA QHY    K  QN  I VE ++     A  +K  E++  G   I+IGTH +    
Sbjct: 686 TTILAGQHYTTFSKRMQNFPITVEFLSRFKSAAETKKIKEKLKAGLIDIVIGTHKVLSAE 745

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+Y  L L+I+DE+ RFGV  + K+ +      VL ++ATPIPRTL ++ +G  D+S + 
Sbjct: 746 IKYKDLGLLIIDEEQRFGVSHKEKIKKLRENVDVLTLSATPIPRTLHMSLVGIRDMSVLE 805

Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           E P  R PI+T ++  +  DE+I E +   +    + Y++  ++          + ER  
Sbjct: 806 EPPVDRIPIQTYVLEHD--DEIIREAINREIGRNGQVYYVYNRVS--------GIDERAA 855

Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            L E    + ++  HG+M++ + E +M  F NG   +L++TT+IE G+D+ + + III++
Sbjct: 856 KLAELIPGARVSFAHGQMNERELERIMIEFINGEIDVLVSTTIIETGLDISNVNTIIIDD 915

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A+  GL+QL+QLRGRVGR    S   L+Y     L + +  RL+ +K   D   GF IA 
Sbjct: 916 ADKMGLSQLYQLRGRVGRSSRTSFAFLMYKRDRMLKEIAEKRLAAIKEFTDLGSGFKIAM 975

Query: 623 EDLKQRKEGEILGIKQSG 640
           +DL+ R  G +LG  QSG
Sbjct: 976 KDLEIRGAGNLLGKSQSG 993


>gi|168487226|ref|ZP_02711734.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC1087-00]
 gi|183569911|gb|EDT90439.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC1087-00]
          Length = 953

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 130/349 (37%), Positives = 201/349 (57%), Gaps = 18/349 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P
Sbjct: 610 PYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVP 669

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    
Sbjct: 670 TTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKD 729

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730 VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++V++
Sbjct: 790 TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQGYYLYNKVD--------TIVQK 837

Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            + L E    +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838 VSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK 612
           ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K
Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIK 946


>gi|227824817|ref|ZP_03989649.1| transcription-repair coupling factor [Acidaminococcus sp. D21]
 gi|226905316|gb|EEH91234.1| transcription-repair coupling factor [Acidaminococcus sp. D21]
          Length = 1093

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 140/378 (37%), Positives = 210/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q  AI++I  DM +   M R+L GDVG GKT VA+ A   AV  G Q  +MAP
Sbjct: 550 PFEETPDQLKAIQEIKADMEKPVPMERLLCGDVGYGKTEVAIRAAFKAVMDGKQVAVMAP 609

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQH    +       + +E+++    +  ++  L+++A G   I+IGTH L Q  
Sbjct: 610 TTVLAQQHLITFQNRMDAFGVRIEMLSRFRSRKEQKDTLDKLAKGDLDIVIGTHRLIQPD 669

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+I+DE+ RFGV Q+ K+ Q ++   VL ++ATPIPRTL L  +   D+S I 
Sbjct: 670 VHFKDLGLLIIDEEQRFGVAQKEKIKQWSSGIDVLTLSATPIPRTLHLALVKGRDMSVIE 729

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T +   +   + E IER    +  G + Y++  +IE         +  R 
Sbjct: 730 SPPEDRLPVETYVAEYDDGMVKEAIER---EIRRGGRIYYVHNRIE-----ALDRIAHRL 781

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             +      SI + HGRM++ + E VM  F  G   +L++TT+IE G+DV  A+ III+ 
Sbjct: 782 REMIPGL--SIGVAHGRMTEDELEEVMVGFYQGDYDVLLSTTIIENGLDVPLANTIIIDG 839

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
           AE+FGL+QL+Q+RGRVGR   ++    LY     LS+ S  RL  +++  +   GF IA 
Sbjct: 840 AENFGLSQLYQMRGRVGRSSRLAYAYFLYKKDKALSEVSQKRLQAIRDFTELGAGFKIAM 899

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +Q G
Sbjct: 900 RDLEIRGAGNLLGAEQHG 917


>gi|260495382|ref|ZP_05815509.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_33]
 gi|260197160|gb|EEW94680.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_33]
          Length = 731

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 142/375 (37%), Positives = 222/375 (59%), Gaps = 13/375 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF+ T +Q  AI+D+ +DM     M R++ GDVG GKT VA+ A   AV    Q +++ P
Sbjct: 202 PFTETPAQLKAIEDVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDSKQVILLVP 261

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHYE   +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D 
Sbjct: 262 TTVLAEQHYERFSERFKNYPVHIEILSRVQSKKEQVESLKRIENGSADLVIGTHRLLSDD 321

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  + L+I+DE+ +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I 
Sbjct: 322 IKFKDVGLLIIDEEQKFGVKAKEKLKKIKGDIDVLTLTATPIPRTLNLSLLGIRDLSVID 381

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P GR+ I T  I  N+  I ++I  L  +  EG + ++I   + ++ ES  + + E  
Sbjct: 382 TSPEGRQKIHTEYIDNNKNLIKDII--LSEISREG-QVFYIFNSV-KRIESKVKEIRE-- 435

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L E+    +  IHG+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +IIE 
Sbjct: 436 -LLPEYI--KVDYIHGQMLPRDIKKNIQEFENGNIDVLVATTIIENGIDIENANTMIIEG 492

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDL 625
            E  GL+Q++QLRGR+GR  + S C +L +   +KN+  R   ++  ++  G  +A ED 
Sbjct: 493 VEKLGLSQVYQLRGRIGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGLDLAMEDS 552

Query: 626 KQRKEGEILGIKQSG 640
           K R  GEILG KQ G
Sbjct: 553 KIRGVGEILGEKQHG 567


>gi|254430155|ref|ZP_05043858.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001]
 gi|197624608|gb|EDY37167.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001]
          Length = 1189

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 140/404 (34%), Positives = 226/404 (55%), Gaps = 18/404 (4%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+ PT  Q  AI D+ +DM Q   M R++ GDVG GKT VA+ A+  AV AG Q  ++
Sbjct: 614  SFPYEPTPDQVKAIADVKRDMEQAQPMDRLVCGDVGFGKTEVAIRAIFKAVTAGRQVAML 673

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            AP  +LAQQH+  + +      + V ++      A R+   E +A G   +++GTH L  
Sbjct: 674  APTTVLAQQHWRSLSERFAPYPVKVSLLNRFRTAAERKLIQEGLAAGTVDVVVGTHQLLG 733

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
               ++ +L L++VDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  ++S 
Sbjct: 734  KGTRFKQLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSLSGVREMSL 793

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
            IT  P  R+PIKT +  ++  + V   ++  L  G + +++ P++E  +E     V ER 
Sbjct: 794  ITTPPPLRRPIKTHLAALDE-EAVRSAIRQELDRGGQIFYVVPRVEGIEE-----VAERL 847

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              +       + + HG+M++ + ES M +F  G   L++ TT++E G+D+   + I+IE+
Sbjct: 848  RQMLPGL--QLLVAHGQMAEGELESAMVAFNAGEADLMLCTTIVESGLDIPRVNTILIED 905

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLK---NTEDGFLIA 621
            A  FGLAQL+QLRGRVGR   I +   L++P    LS+ +  RL  ++       G+ +A
Sbjct: 906  AHRFGLAQLYQLRGRVGR-SGIQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGSGYQLA 964

Query: 622  EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKD 662
              D++ R  G +LG++QSG  +   F +    L +SL EI  +D
Sbjct: 965  MRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQD 1008


>gi|218666669|ref|YP_002424872.1| transcription-repair coupling factor [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518882|gb|ACK79468.1| transcription-repair coupling factor [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 1149

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 137/385 (35%), Positives = 215/385 (55%), Gaps = 19/385 (4%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           + +   PF  T  Q+ AI  ++ DM+  + M R++ GDVG GKT VAL A   A  +G Q
Sbjct: 594 EFVSRFPFEETPDQQQAIDAVIADMTSPHPMDRLVCGDVGFGKTEVALRAAFLAAHSGAQ 653

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             ++ P  +LAQQHYE  +       + VE+++        ++ L  ++ G+  I+IGTH
Sbjct: 654 VAVLVPTTLLAQQHYENFRNRCAGLPLRVEVLSRFQNAKTHKQVLTAVSVGEVDILIGTH 713

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L Q  + ++ L L+I+DE+HRFGV+Q+ ++        +L +TATPIPRTL L+  G  
Sbjct: 714 RLLQKDVAFHDLGLLILDEEHRFGVRQKERIKALRAEVDILTLTATPIPRTLNLSLAGLR 773

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFR 501
           D+S I   P  R+P++T  + I     VIE  +  L  G + Y++  ++   E+  +  R
Sbjct: 774 DLSIIATPPQRRQPVRT-FVQIWDDATVIEACQRELHRGGQVYFLHNEVRDIERMAATLR 832

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++           + + + HG+M + + E+VM  F +    +L+ TT+IE GID   A+
Sbjct: 833 RLLP---------EARLRVAHGQMPEGELEAVMLDFYHQRFDILLCTTIIESGIDNPHAN 883

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNTED-- 616
            I+I  A+ FGLAQLHQLRGRVGR  +  +   L+ P L   S ++  RL  +++ ED  
Sbjct: 884 TILINRADKFGLAQLHQLRGRVGRSHQ-RAYAYLFTPDLRAMSDDARRRLDAIQSLEDLG 942

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640
            GF +A  DL+ R  GE+LG +QSG
Sbjct: 943 VGFALASHDLEIRGAGELLGEEQSG 967


>gi|240013954|ref|ZP_04720867.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            DGI18]
 gi|240121523|ref|ZP_04734485.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            PID24-1]
          Length = 1234

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ 
Sbjct: 654  LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 713

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VAL A   AV  G Q  ++AP  +L +QH + F  ++      +  +   N
Sbjct: 714  GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 773

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              +A  +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +  
Sbjct: 774  NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 832

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   
Sbjct: 833  ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 891

Query: 479  LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            L  G + +++  +++        ++ ER  +L     + I + HG++ + + E VM  F 
Sbjct: 892  LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 944

Query: 539  NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                 +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL   
Sbjct: 945  QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1004

Query: 599  PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             ++K++  RL  +   ++   GF +A +DL+ R  GEILG  QSG  + +     L+  +
Sbjct: 1005 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1062

Query: 656  LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            L+ A +D K    + PDL +  G +  I L+
Sbjct: 1063 LKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1091


>gi|300362407|ref|ZP_07058583.1| transcription-repair coupling factor [Lactobacillus gasseri JV-V03]
 gi|300353398|gb|EFJ69270.1| transcription-repair coupling factor [Lactobacillus gasseri JV-V03]
          Length = 1171

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 143/431 (33%), Positives = 233/431 (54%), Gaps = 21/431 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    +   +  E +A  +  L  +++ +K  G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKKRVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKEFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM     M R+L GDVG GKT VAL A   A+  G Q   +AP  ILAQQH+
Sbjct: 621 RSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E ++   +N  +   +++     A  ++ +E + +GQ  +++GTH L    +++  L L+
Sbjct: 681 ETMQDRFKNFPVNCALLSRFQTPAEVKEIIEGVKNGQIDMVVGTHRLLSKDVKFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T +  +  +  V+   + VL E K+    +++  +I+     +   VV R   L     
Sbjct: 801 QTYV--MEEMPSVVR--EAVLREMKRNGQVFFLHNRID-----DIDKVVSRLEELIPE-- 849

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +I+ENA+H+GL+Q
Sbjct: 850 AKIEYIHGRMSENQMEDIMYRFSRNEFDILVTTTIIETGVDMPNVNTMIVENADHYGLSQ 909

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGR+GR   ++    LY P   L++    RLS +++ TE   GF IA  DL  R  
Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGA 969

Query: 631 GEILGIKQSGM 641
           G +LG +Q G 
Sbjct: 970 GNMLGKQQHGF 980


>gi|257455867|ref|ZP_05621086.1| transcription-repair coupling factor [Enhydrobacter aerosaccus
           SK60]
 gi|257446715|gb|EEV21739.1| transcription-repair coupling factor [Enhydrobacter aerosaccus
           SK60]
          Length = 1182

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 152/433 (35%), Positives = 233/433 (53%), Gaps = 27/433 (6%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQ 277
           +W     + L+    +A ++  +  R+  K  I  PI+   +I   +  +   F  T  Q
Sbjct: 583 KWDKAKAKALSQIHDVAAELLNVQARRDAKVGINFPID---QIQYDLFASQFAFEETPDQ 639

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            +AI+ +  DM Q   M R++ GDVG GKT VA+ A   AV+AG Q  ++ P  +LA QH
Sbjct: 640 ANAIEAVKFDMKQNKPMDRLVCGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQH 699

Query: 338 YE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            + F+ ++  +  I +E ++    +    K L  +A+GQ  I+IGTH + Q+ +++  L 
Sbjct: 700 EDNFLDRFA-DWPIRIESLSRFGTKKQHDKILADLANGQVDIVIGTHRILQEDVKFANLG 758

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+IVDE+HRFGV+ + ++    +   VL MTATPIPRTL +   G  ++S I   PA R 
Sbjct: 759 LMIVDEEHRFGVRDKERIKAMQSDVDVLSMTATPIPRTLNMALSGMRNMSIIATPPARRL 818

Query: 457 PIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
            IKT ++P   N + E I R    L  G + + +   +   E+     R +V        
Sbjct: 819 AIKTFVMPKSDNLLKEAILR---ELLRGGQVFLLHNDVASIERMAETVRELVPE------ 869

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              S +A+ HG+M + + E +M SF +    +L+ TT+IE GID+ +A+ III  A+ FG
Sbjct: 870 ---SRVAVAHGQMKERELEQIMQSFYHKKHNVLVCTTIIETGIDIPNANTIIINRADKFG 926

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
           LAQLHQLRGRVGR    + C LL      L+ ++  RL  +        GF++A EDL+ 
Sbjct: 927 LAQLHQLRGRVGRSHHQAYCYLLVPSIKGLTSDAQKRLDAISRANTLGAGFMLASEDLEI 986

Query: 628 RKEGEILGIKQSG 640
           R  GE+LG  QSG
Sbjct: 987 RGAGELLGKNQSG 999


>gi|322377900|ref|ZP_08052388.1| transcription-repair coupling factor [Streptococcus sp. M334]
 gi|321281076|gb|EFX58088.1| transcription-repair coupling factor [Streptococcus sp. M334]
          Length = 1169

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 149/405 (36%), Positives = 229/405 (56%), Gaps = 25/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  ++++I +DM     M R+L GDVG GKT VA+ A   AV    Q V++ P
Sbjct: 610  PYVETDDQLRSVEEIKRDMQDSQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTETLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++ ++
Sbjct: 790  TPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIDQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IAR++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIARRNG 1000


>gi|289433569|ref|YP_003463441.1| transcription-repair coupling factor [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289169813|emb|CBH26351.1| transcription-repair coupling factor [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 1178

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 144/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T  Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSPDEEMQREFEDAFPYQETDDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631 RSIAEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ +  G   I++GTH L    ++Y+ L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKSGTVDIVVGTHRLLSKDVEYHDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +   N   + E IER    L+   + Y++  ++E        ++ ++ + +      
Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------TITQKADEISAMVPD 859

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +AI HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+Q
Sbjct: 860 ARVAIAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR   I+    +Y     L + +  RLS +K  TE   GF IA  DL  R  
Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979

Query: 631 GEILGIKQSG 640
           G ILG +Q G
Sbjct: 980 GNILGAQQHG 989


>gi|254422402|ref|ZP_05036120.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335]
 gi|196189891|gb|EDX84855.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335]
          Length = 1177

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 135/385 (35%), Positives = 215/385 (55%), Gaps = 17/385 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q++  + P++PT  Q  A +D+ +DM     M R++ GDVG GKT VAL A+  AV AG 
Sbjct: 619 QELEDSFPYNPTPDQLKATQDVKRDMESDRPMDRLVCGDVGFGKTEVALRAVFKAVTAGK 678

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++AP  IL QQHY  +K+      I + ++        R+  L R+  G+  +++GT
Sbjct: 679 QVALLAPTTILTQQHYHTLKERFAPYPIQIGLLNRFRTAKERKDILLRLISGELDVVVGT 738

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L   ++++  L L++VDE+ RFGV Q+ K+        VL ++ATPIPRTL +   G 
Sbjct: 739 HQLLGKTVKFKDLGLLVVDEEQRFGVNQKEKIKAMKAQVDVLTLSATPIPRTLYMALSGV 798

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNF 500
            ++S IT  P  R+PIKT + P +  ++V   ++  L  G + +++ P++E  E+     
Sbjct: 799 REMSLITTPPPSRRPIKTHLSPYDP-EKVRTAIRQELDRGGQIFYVVPRVEGIEEVAGRI 857

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           R  V             +AI HG+M + + E+ M +F NG   L++ TT+IE G+D+   
Sbjct: 858 REAVPGVR---------LAIAHGQMPEGELEATMLTFSNGDADLMVCTTIIESGLDIPRV 908

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLK---NTE 615
           + IIIE+++ FGL+QL+QLRGRVGR    +   LL+     LS  +  RL  ++      
Sbjct: 909 NTIIIEDSQKFGLSQLYQLRGRVGRSGIQAHAWLLFPKQNQLSDKARKRLRAIQEFTQLG 968

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSG 640
            G+ +A  D++ R  G +LG +QSG
Sbjct: 969 SGYQLAMRDMEIRGIGNLLGAQQSG 993


>gi|172060905|ref|YP_001808557.1| transcription-repair coupling factor [Burkholderia ambifaria MC40-6]
 gi|171993422|gb|ACB64341.1| transcription-repair coupling factor [Burkholderia ambifaria MC40-6]
          Length = 1156

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 159/431 (36%), Positives = 232/431 (53%), Gaps = 23/431 (5%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 596  KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 655

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F+ ++ +    IVE+      +     A+ +I  G   I+IGT
Sbjct: 656  VALLSPTTLLAEQHTQTFVDRFAEWPVRIVELSRFKTTK-EVNAAIAQINEGTVDIVIGT 714

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 715  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500
             D S I   P  R  IKT +    R +E + R  ++  L  G + Y++  ++E  +  N 
Sbjct: 775  RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIE--NR 829

Query: 501  RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            R+++E          + I I HG+M + + E VM  F      +L+ TT+IE GIDV  A
Sbjct: 830  RAMLEELVP-----EARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 884

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
            + II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+  
Sbjct: 885  NTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELG 944

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+
Sbjct: 945  SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTA 1000

Query: 676  VRGQSIRILLY 686
                +  I L+
Sbjct: 1001 PLAATTEINLH 1011


>gi|194098853|ref|YP_002001917.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            NCCP11945]
 gi|240115873|ref|ZP_04729935.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            PID18]
 gi|193934143|gb|ACF29967.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            NCCP11945]
          Length = 1234

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ 
Sbjct: 654  LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 713

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VAL A   AV  G Q  ++AP  +L +QH + F  ++      +  +   N
Sbjct: 714  GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 773

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              +A  +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +  
Sbjct: 774  NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 832

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   
Sbjct: 833  ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 891

Query: 479  LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            L  G + +++  +++        ++ ER  +L     + I + HG++ + + E VM  F 
Sbjct: 892  LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 944

Query: 539  NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                 +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL   
Sbjct: 945  QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1004

Query: 599  PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             ++K++  RL  +   ++   GF +A +DL+ R  GEILG  QSG  + +     L+  +
Sbjct: 1005 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1062

Query: 656  LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            L+ A +D K    + PDL +  G +  I L+
Sbjct: 1063 LKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1091


>gi|59801051|ref|YP_207763.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            FA 1090]
 gi|59717946|gb|AAW89351.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            FA 1090]
          Length = 1234

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ 
Sbjct: 654  LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 713

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VAL A   AV  G Q  ++AP  +L +QH + F  ++      +  +   N
Sbjct: 714  GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 773

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              +A  +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +  
Sbjct: 774  NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 832

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   
Sbjct: 833  ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 891

Query: 479  LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            L  G + +++  +++        ++ ER  +L     + I + HG++ + + E VM  F 
Sbjct: 892  LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 944

Query: 539  NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                 +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL   
Sbjct: 945  QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1004

Query: 599  PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             ++K++  RL  +   ++   GF +A +DL+ R  GEILG  QSG  + +     L+  +
Sbjct: 1005 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1062

Query: 656  LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            L+ A +D K    + PDL +  G +  I L+
Sbjct: 1063 LKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1091


>gi|308271395|emb|CBX28003.1| hypothetical protein N47_G33270 [uncultured Desulfobacterium sp.]
          Length = 1171

 Score =  224 bits (570), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 141/379 (37%), Positives = 211/379 (55%), Gaps = 21/379 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q SAI D++ DM     M R++ GDVG GKT VAL A   A+    Q  ++ P 
Sbjct: 626 YEETPDQLSAIDDVMSDMENNTPMDRLVCGDVGYGKTEVALRASFLAINCAKQVAVLVPT 685

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH+   K   +   + +E ++       +++ +  I+ G+A I+IGTH L Q  +
Sbjct: 686 TVLAEQHFSTFKARFEKYPVNIECLSRFRSIKEQKRIISDISSGKADIVIGTHRLLQKDV 745

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+++DE+HRFGV+ + KL +      VL +TATPIPRTL ++  G  DIS I+ 
Sbjct: 746 IFKDLGLIVLDEEHRFGVKHKEKLKKLRNNVDVLALTATPIPRTLHMSLTGIRDISVIST 805

Query: 451 KPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R   +++I  ++  DE +  E ++  L+   + Y++         +N  ++ +  N
Sbjct: 806 PPEHR---QSIITYVSEFDEALIAEAVRKELARKGQIYFV--------HNNIFTIDKIAN 854

Query: 509 SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            LHE      I I HGR+S+ + ESVM  F N    +L+ TT+IE G+D+  A+ III  
Sbjct: 855 KLHELIPEIKIGIGHGRLSENELESVMLKFVNKDIDMLVCTTIIESGLDIPSANTIIINR 914

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIA 621
           A+ FGLAQ++QLRGRVGR +E  +   L+ P    L K++  RL VL    D   GF IA
Sbjct: 915 ADRFGLAQIYQLRGRVGRSDE-QAYAYLFIPKDSILGKDAQKRLKVLMEHSDLGSGFQIA 973

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G ILG  QSG
Sbjct: 974 MSDLRIRGGGTILGASQSG 992


>gi|260890929|ref|ZP_05902192.1| transcription-repair coupling factor [Leptotrichia hofstadii F0254]
 gi|260859482|gb|EEX73982.1| transcription-repair coupling factor [Leptotrichia hofstadii F0254]
          Length = 1069

 Score =  224 bits (570), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 213/381 (55%), Gaps = 20/381 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           N PF  T+ Q +AI D+ +DM     M RI+ GDVG GKT VA+ A   A++ G Q V++
Sbjct: 526 NFPFEETEDQRNAINDVKKDMESPQIMDRIVCGDVGYGKTEVAMRAAFKAIDNGKQVVMV 585

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  +LA+QH+E  K+  +N  I +E ++  + ++  +  L+ +  G   ++IGTH L  
Sbjct: 586 APTTVLAEQHFERFKRRFENYPITIENLS-RLTKSKSKDILKNLKSGIIDLVIGTHRLLS 644

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +Q+  L L+I+DE+ +FGV+ + KL  +     VL +TATPIPRTL L  LG  +IS 
Sbjct: 645 DDVQFKNLGLLIIDEEQKFGVKAKEKLKSQREKLDVLTLTATPIPRTLNLAMLGIREISI 704

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R PI T I+     DE   ++ ++  LS   + ++I   +        +++ E
Sbjct: 705 IDTPPTNRLPIITEILD---WDEETIKMAILRELSRDGQVFYIYNDV--------KNMKE 753

Query: 506 RFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +   L E     + I  I+G++   + +  +  F+NG   +LIA+T+IE GIDV +A+ I
Sbjct: 754 KLKELKEMLPDFVKIEFINGQLPPKEIKDKLLRFENGQFDILIASTIIENGIDVGNANTI 813

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE----DGFL 619
           +IEN    GL+Q++QL+GRVGR      C LL    ++K    +   +   E     GF 
Sbjct: 814 LIENFTGLGLSQVYQLKGRVGRSNRQGYCYLLKTRNITKQGRQKEESMLKVEGIKSGGFQ 873

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           I+ EDLK R  GEILG KQ G
Sbjct: 874 ISMEDLKIRGAGEILGDKQHG 894


>gi|294141531|ref|YP_003557509.1| transcription-repair coupling factor [Shewanella violacea DSS12]
 gi|293328000|dbj|BAJ02731.1| transcription-repair coupling factor [Shewanella violacea DSS12]
          Length = 1157

 Score =  224 bits (570), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 148/415 (35%), Positives = 229/415 (55%), Gaps = 21/415 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A ++  +  R+Q +      I+ E + AQ    + PF  T  QE++I  +L DM     
Sbjct: 572 VAAELLDVYARRQSRPGSACKID-EQEYAQ-FANSFPFEETVDQETSINAVLTDMCSPIA 629

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQH+E  K    +  + +E
Sbjct: 630 MDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTLLAQQHFENFKDRFADWPVKIE 689

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +I+       ++  ++ ++ G+  IIIGTH L      +  L L+++DE+HRFGV+Q+ +
Sbjct: 690 VISRFKTAKEQKLIMDELSKGKVDIIIGTHKLLHSEGDFENLGLLVIDEEHRFGVRQKEQ 749

Query: 414 LTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           +  KA   HV  L +TATPIPRTL +   G  D+S I   PA R  +KT I   +    +
Sbjct: 750 I--KALRAHVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFIREYDTT-TI 806

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDK 530
            E L   +  G + Y++  ++E        ++ +R   + E    + +   HG+M + D 
Sbjct: 807 REALLREILRGGQVYFLHNKVE--------TIEKRAKEISELLPEARVVTAHGQMRERDL 858

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E VM  F +    +L+ TT+IE GIDV  A+ I+IE A++FGLAQLHQLRGRVGR    +
Sbjct: 859 ERVMSDFYHQKFNVLVCTTIIETGIDVPSANTIVIERADNFGLAQLHQLRGRVGRSHHQA 918

Query: 591 SCILLY-HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
              ++  HP  ++ ++  RL  +   ED   GF++A +DL+ R  GE+LG +QSG
Sbjct: 919 YAYMMTPHPKSITSDARKRLEAIGALEDLGAGFMLATQDLEIRGAGELLGDEQSG 973


>gi|257062106|ref|YP_003139994.1| transcription-repair coupling factor [Cyanothece sp. PCC 8802]
 gi|256592272|gb|ACV03159.1| transcription-repair coupling factor [Cyanothece sp. PCC 8802]
          Length = 1158

 Score =  224 bits (570), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 137/380 (36%), Positives = 213/380 (56%), Gaps = 16/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVI 326
           + P+ PT  Q  A++D+  D+     M R++ GDVG GKT VA+ A+  AV +G  Q  +
Sbjct: 604 SFPYQPTPDQLKAVQDVKMDLESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGHKQVAL 663

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +AP  IL QQHY  +K+      I + ++      + ++  ++R+A G+  I++GTH L 
Sbjct: 664 LAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTTSEKKDIVQRLATGELDIVVGTHQLL 723

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
             S+++  L L+++DE+ RFGV Q+ K+    T   VL +TATPIPRTL ++  G  +IS
Sbjct: 724 GQSVKFKNLGLLVIDEEQRFGVNQKEKIKALKTEVDVLTLTATPIPRTLYMSLSGIREIS 783

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            IT  P  R+PIKT +   N  D V   ++  L  G + +++ P++E         + E 
Sbjct: 784 LITTPPPSRRPIKTHLSSYNP-DVVRTAIRNELDRGGQIFYVVPRVE--------GIEEV 834

Query: 507 FNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              + +   S+ I I HG+M   D E  M  F NG   +L+ TT+IE G+D+   + II+
Sbjct: 835 AGQIQQMVPSARIVIAHGQMDVNDLEMTMLGFNNGEADILVCTTIIESGLDIPRVNTIIV 894

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLI 620
           E+A+ FGL+QL+QLRGRVGR    +   LLY     LS+ +  RL  L+       G+ +
Sbjct: 895 EDAQKFGLSQLYQLRGRVGRSGIQAHAWLLYPNKGQLSETARQRLRALQEFSQLGSGYQL 954

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  D++ R  G +LG +QSG
Sbjct: 955 ATRDMEIRGVGNLLGAEQSG 974


>gi|108762520|ref|YP_629274.1| transcription-repair coupling factor [Myxococcus xanthus DK 1622]
 gi|108466400|gb|ABF91585.1| transcription-repair coupling factor [Myxococcus xanthus DK 1622]
          Length = 1188

 Score =  224 bits (570), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 215/382 (56%), Gaps = 21/382 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +  F  T  Q  AI+D+L DM +   M R++ GDVG GKT VA+ A   A     Q  ++
Sbjct: 638  DFEFEETPDQAKAIEDVLADMQKPEPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVL 697

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +LAQQH+   KK   +  + VE+I+G       R+ L+R   G+  I+IGTH L  
Sbjct: 698  VPTTVLAQQHFLSFKKRFADYPVTVEVISGLKKAPEVREILKRAKEGKVDILIGTHKLLG 757

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              + + +L L+IVDE+ RFGV+Q+  L +  +   VL +TATPIPRTL ++  G  D+S 
Sbjct: 758  GEVAFKELGLMIVDEEQRFGVKQKESLKKWRSQIDVLTLTATPIPRTLHMSMSGVRDMSI 817

Query: 448  ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSV 503
            I   P  R+ I+T ++      + E IER    ++ G + +++  ++E     E+  R++
Sbjct: 818  IATPPQDRRAIRTFVMKYEDTVVKEAIER---EVARGGQVFFVHNRVESLPSIETQLRAL 874

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            V +          SI + HG+M +   E VM +F     ++L+ T++IE GID+  A+ +
Sbjct: 875  VPQV---------SIGVAHGQMGEGQLEKVMLAFTEKKYQVLLCTSIIESGIDISSANTM 925

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618
            I+  A+ FGLAQL+QLRGRVGR +E +   LL      ++K++  RL VL+N  +   GF
Sbjct: 926  IVNRADQFGLAQLYQLRGRVGRSKERAYAYLLVPSRRAVTKDAQRRLEVLQNFTELGAGF 985

Query: 619  LIAEEDLKQRKEGEILGIKQSG 640
             IA  DL+ R  G +LG KQSG
Sbjct: 986  SIASHDLEIRGAGNLLGDKQSG 1007


>gi|268684509|ref|ZP_06151371.1| transcription-repair coupling factor [Neisseria gonorrhoeae
            SK-92-679]
 gi|268624793|gb|EEZ57193.1| transcription-repair coupling factor [Neisseria gonorrhoeae
            SK-92-679]
          Length = 1241

 Score =  224 bits (570), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ 
Sbjct: 661  LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 720

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VAL A   AV  G Q  ++AP  +L +QH + F  ++      +  +   N
Sbjct: 721  GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 780

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              +A  +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +  
Sbjct: 781  NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKERLKRLR 839

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   
Sbjct: 840  ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 898

Query: 479  LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            L  G + +++  +++        ++ ER  +L     + I + HG++ + + E VM  F 
Sbjct: 899  LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 951

Query: 539  NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                 +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL   
Sbjct: 952  QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1011

Query: 599  PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             ++K++  RL  +   ++   GF +A +DL+ R  GEILG  QSG  + +     L+  +
Sbjct: 1012 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1069

Query: 656  LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            L+ A +D K    + PDL +  G +  I L+
Sbjct: 1070 LKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1098


>gi|170289131|ref|YP_001739369.1| DEAD/DEAH box helicase domain-containing protein [Thermotoga sp.
           RQ2]
 gi|170176634|gb|ACB09686.1| DEAD/DEAH box helicase domain protein [Thermotoga sp. RQ2]
          Length = 893

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 133/409 (32%), Positives = 236/409 (57%), Gaps = 17/409 (4%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           ++  L M++Q  + + +P + E  + +K   + P+  T  Q+ +I++++ D++ +  M R
Sbjct: 338 ELVELYMKRQEAQGLSLPGDPE--LEEKFAESFPYIETPDQQQSIEEVMSDLASEKPMDR 395

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L GD G GKT VAL A   AV +G Q  ++ P  +LA+QHYE  K+  +   + VE++ 
Sbjct: 396 LLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVLARQHYENFKERMETFGVKVELLD 455

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
            +     +++ +E++  G+  IIIGTH+L  + I++  L LVI+DE+ +FGV+Q+ +  +
Sbjct: 456 SSRTAREKKEIIEKLKKGEIDIIIGTHSLLNERIEFSDLGLVIIDEEQKFGVEQKERFKK 515

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
              + +VL ++ATPIPRTL +   G  D S I   P GRKP+   +   +  D++++   
Sbjct: 516 LRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVYVYVAEYS--DDLVKGAV 573

Query: 477 V-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           +  ++ G +  ++  ++EE        + E F  L   F    IA+ HG+MS    E ++
Sbjct: 574 IREINRGGQVIYVHNRVEE--------LPEVFEKLKRMFPELEIAVAHGKMSRRAMERIV 625

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G   +L+ TT+IE G+D+ +A+ +I+++A  +GL+QL+QLRGRVGR +  +    
Sbjct: 626 HEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLSQLYQLRGRVGRSDRRAFAYF 685

Query: 595 LYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           LY     +++  RL VLK+      G  IA +D++ R  G++LG++Q G
Sbjct: 686 LYPKGTPRSALERLKVLKSYTGFGSGLQIALKDMELRGVGDVLGLEQHG 734


>gi|30248039|ref|NP_840109.1| mfd: transcription-repair coupling factor [Nitrosomonas europaea ATCC
            19718]
 gi|30179924|emb|CAD83919.1| mfd: transcription-repair coupling factor [Nitrosomonas europaea ATCC
            19718]
          Length = 1154

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 162/430 (37%), Positives = 231/430 (53%), Gaps = 28/430 (6%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   AV  G Q  ++ P 
Sbjct: 605  FEETPDQATAINAVIQDMVSGKSMDRLICGDVGFGKTEVALRAAFVAVTDGKQVAVLVPT 664

Query: 331  GILAQQHYE-FIKKYTQ-NTQIIVEIITGNMPQAHRRKA--LERIAHGQAHIIIGTHALF 386
             +LA+QHY+ F  ++     Q  V+I   +  ++ R +A  L+ +A G   IIIGTH L 
Sbjct: 665  TLLAEQHYQNFSDRFGLIADQWPVKIAELSRFRSAREQAEALQSLAQGTTDIIIGTHKLI 724

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            QD +++  L LVI+DE+HRFGV+Q+ +L +      VL +TATPIPRTL ++  G  D S
Sbjct: 725  QDKVKFKNLGLVIIDEEHRFGVRQKEQLKKLRAEVDVLTLTATPIPRTLAMSLEGLRDFS 784

Query: 447  KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
             I   P  R  I+T + P +   I E   R    L  G + Y++  ++     S  +++ 
Sbjct: 785  VIATAPQRRLAIRTFVHPYSEGIIREACLR---ELKRGGQIYFLYNEV-----STIQNMY 836

Query: 505  ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             R  +L     + I I HG+M + + E VM  F      LL+ TT+IE GID+  A+ II
Sbjct: 837  TRLTTLLPE--ARINIAHGQMRESELEHVMRDFYQQRFNLLLCTTIIETGIDIPTANTII 894

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTED---GF 618
            I  A+ FGLAQLHQLRGRVGR    +   LL  P    L+  +  RL  ++  E+   GF
Sbjct: 895  IHRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPEKAALTTQATRRLEAIQAMEELGSGF 954

Query: 619  LIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
             +A  DL+ R  G +LG  QSG M +   +   L+ SLL+ A K  K     +PD+    
Sbjct: 955  YLAMHDLEIRGAGAVLGDSQSGEMQEVGFS---LYSSLLDAAIKSLK--AGHEPDMQQPL 1009

Query: 678  GQSIRILLYL 687
            G S  I L++
Sbjct: 1010 GVSTEIRLHV 1019


>gi|325955975|ref|YP_004286585.1| transcription-repair coupling factor [Lactobacillus acidophilus
           30SC]
 gi|325332540|gb|ADZ06448.1| transcription-repair coupling factor [Lactobacillus acidophilus
           30SC]
          Length = 1164

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 145/431 (33%), Positives = 231/431 (53%), Gaps = 21/431 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +K  G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQRQFDDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++     A  ++ +E +  G+  +++GTH L    + +  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLEDGKIDLVVGTHRLLSKDVHFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T +   IP    D  +  +K     G + +++  +I     S+    VE+   L  +  
Sbjct: 801 QTYVMEQIPSVIKDACLREMK----RGGQVFYLHNRI-----SDIDETVEKLQQLIPN-- 849

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+Q
Sbjct: 850 ARIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQ 909

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF IA  DL  R  
Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGA 969

Query: 631 GEILGIKQSGM 641
           G +LG +Q G 
Sbjct: 970 GNMLGAQQHGF 980


>gi|270291823|ref|ZP_06198038.1| transcription-repair coupling factor [Streptococcus sp. M143]
 gi|270279351|gb|EFA25193.1| transcription-repair coupling factor [Streptococcus sp. M143]
          Length = 1167

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 149/406 (36%), Positives = 230/406 (56%), Gaps = 25/406 (6%)

Query: 269  IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             P+  T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV    Q V++ 
Sbjct: 609  FPYVETDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLV 668

Query: 329  PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            P  +LAQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +   
Sbjct: 669  PTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQVDILIGTHRVLSK 728

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I
Sbjct: 729  DVVFSDLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVI 788

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
               P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++ +
Sbjct: 789  ETPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIDQ 836

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            + + L E    +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + 
Sbjct: 837  KVSELQELIPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLF 896

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFL 619
            IENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF 
Sbjct: 897  IENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFK 956

Query: 620  IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            IA  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 957  IAMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|240016396|ref|ZP_04722936.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            FA6140]
 gi|240125910|ref|ZP_04738796.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            SK-92-679]
          Length = 1234

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ 
Sbjct: 654  LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 713

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VAL A   AV  G Q  ++AP  +L +QH + F  ++      +  +   N
Sbjct: 714  GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 773

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              +A  +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +  
Sbjct: 774  NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKERLKRLR 832

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   
Sbjct: 833  ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 891

Query: 479  LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            L  G + +++  +++        ++ ER  +L     + I + HG++ + + E VM  F 
Sbjct: 892  LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 944

Query: 539  NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                 +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL   
Sbjct: 945  QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1004

Query: 599  PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             ++K++  RL  +   ++   GF +A +DL+ R  GEILG  QSG  + +     L+  +
Sbjct: 1005 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1062

Query: 656  LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            L+ A +D K    + PDL +  G +  I L+
Sbjct: 1063 LKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1091


>gi|255025717|ref|ZP_05297703.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J2-003]
          Length = 626

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T+ Q 
Sbjct: 20  EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 77

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 78  RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 137

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 138 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 197

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 198 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 257

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +   N   + E IER    L+   + Y++  ++E        S+ ++ + +      
Sbjct: 258 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 306

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+Q
Sbjct: 307 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 366

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR   I+    +Y     L + +  RLS +K  TE   GF IA  DL  R  
Sbjct: 367 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 426

Query: 631 GEILGIKQSG 640
           G ILG +Q G
Sbjct: 427 GNILGAQQHG 436


>gi|268599202|ref|ZP_06133369.1| transcription-repair coupling factor [Neisseria gonorrhoeae MS11]
 gi|268603888|ref|ZP_06138055.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID1]
 gi|268682351|ref|ZP_06149213.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID332]
 gi|268583333|gb|EEZ48009.1| transcription-repair coupling factor [Neisseria gonorrhoeae MS11]
 gi|268588019|gb|EEZ52695.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID1]
 gi|268622635|gb|EEZ55035.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID332]
          Length = 1241

 Score =  223 bits (569), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ 
Sbjct: 661  LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 720

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VAL A   AV  G Q  ++AP  +L +QH + F  ++      +  +   N
Sbjct: 721  GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 780

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              +A  +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +  
Sbjct: 781  NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 839

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   
Sbjct: 840  ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 898

Query: 479  LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            L  G + +++  +++        ++ ER  +L     + I + HG++ + + E VM  F 
Sbjct: 899  LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 951

Query: 539  NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                 +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL   
Sbjct: 952  QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1011

Query: 599  PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             ++K++  RL  +   ++   GF +A +DL+ R  GEILG  QSG  + +     L+  +
Sbjct: 1012 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1069

Query: 656  LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            L+ A +D K    + PDL +  G +  I L+
Sbjct: 1070 LKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1098


>gi|114327500|ref|YP_744657.1| transcription-repair coupling factor [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315674|gb|ABI61734.1| transcription-repair coupling factor [Granulibacter bethesdensis
           CGDNIH1]
          Length = 1149

 Score =  223 bits (569), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 140/403 (34%), Positives = 217/403 (53%), Gaps = 19/403 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF+ T+ Q  AI D+L+DM+    M R++ GDVG GKT +AL A   A   G Q  ++ P
Sbjct: 591 PFAETEDQARAIADVLEDMASGRPMDRLICGDVGFGKTEIALRAAFVAAMTGAQVAVVVP 650

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY    K  +   + V  ++  +      +    +A G  +I++GTHAL   +
Sbjct: 651 TTLLARQHYRTFAKRFEGLPVTVAQLSRMVTAKEASQVRAGLADGSVNIVVGTHALLAKT 710

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +Q+  L LVIVDE+  FGV  + KL       HVL +TATPIPRTL L+  G  ++S I 
Sbjct: 711 VQFADLGLVIVDEEQHFGVSHKEKLKALRADVHVLTLTATPIPRTLQLSLSGVREMSIIA 770

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  ++T I+P +   + E I+R +     G + + +CP++E     +   + ER 
Sbjct: 771 TPPVDRLAVRTFIMPFDSVVVREAIQRERF---RGGQVFCVCPRLE-----DLGRMAERL 822

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             +     + +   HG+++  + E VM  F +G   +L+AT ++E G+D+   + III  
Sbjct: 823 AEIVPE--AKLITAHGQLAPTELERVMTEFGDGKHDILLATNIVESGLDMPAVNTIIIHR 880

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A+ FGL QL+QLRGRVGRG++     L +     LS  +  RL V++  +    GF +A 
Sbjct: 881 ADMFGLGQLYQLRGRVGRGKQRGYAYLTWPQAHRLSVAAEKRLEVMQTLDTLGAGFTLAS 940

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            DL  R  G +LG +QSG  + +    EL+  +LE A  D +H
Sbjct: 941 HDLDIRGAGNLLGDEQSGHIREV--GIELYQQMLEDAVADMRH 981


>gi|240080515|ref|ZP_04725058.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            FA19]
 gi|240113117|ref|ZP_04727607.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            MS11]
 gi|240118171|ref|ZP_04732233.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            PID1]
 gi|240123719|ref|ZP_04736675.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            PID332]
 gi|268596647|ref|ZP_06130814.1| transcription-repair coupling factor [Neisseria gonorrhoeae FA19]
 gi|268550435|gb|EEZ45454.1| transcription-repair coupling factor [Neisseria gonorrhoeae FA19]
          Length = 1234

 Score =  223 bits (569), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ 
Sbjct: 654  LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 713

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VAL A   AV  G Q  ++AP  +L +QH + F  ++      +  +   N
Sbjct: 714  GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 773

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              +A  +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +  
Sbjct: 774  NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 832

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   
Sbjct: 833  ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 891

Query: 479  LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            L  G + +++  +++        ++ ER  +L     + I + HG++ + + E VM  F 
Sbjct: 892  LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 944

Query: 539  NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                 +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL   
Sbjct: 945  QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1004

Query: 599  PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             ++K++  RL  +   ++   GF +A +DL+ R  GEILG  QSG  + +     L+  +
Sbjct: 1005 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1062

Query: 656  LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            L+ A +D K    + PDL +  G +  I L+
Sbjct: 1063 LKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1091


>gi|289763152|ref|ZP_06522530.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis GM
           1503]
 gi|289710658|gb|EFD74674.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis GM
           1503]
          Length = 578

 Score =  223 bits (569), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 164/514 (31%), Positives = 260/514 (50%), Gaps = 59/514 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEE--RIVTITGYISQHSSFQLQK---RRPYKILLNDG 97
           DLL ++P S+++   R  I +   E    +TI   I+   SF ++K   R+  +I +  G
Sbjct: 31  DLLRHYPRSYVEGAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNRKCLRITVGGG 90

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
             ++T  FF    + +     +  K+ ++G++   K  + + HP ++  +S D       
Sbjct: 91  RNKVTATFF--NADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSPDGKNHGTR 148

Query: 158 AVYSLPTGLSVDLFKKIIVEALSR--LPVLP------EW-IEK------DLLQKKSFPSI 202
           ++ S+    S  +  +++VE   R   P+ P       W I K      D+L +   P  
Sbjct: 149 SLKSIADA-SKAISGELVVEEFERRFFPIYPASTKVQSWDIFKCVRQVLDVLDRVDDPLP 207

Query: 203 AE------------AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           AE            A   IH    A+       ARERL +DE +  Q AL+  R     E
Sbjct: 208 AELRAKHGLIPEDEALRAIH---LAESQSLRERARERLTFDEAVGLQWALVARRHGELSE 264

Query: 251 IGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTL 308
            G     +   +A ++LR +PF  T  Q   + D+L D    NR L R+LQG+VGSGKT+
Sbjct: 265 SGPSAAWKSNGLAAELLRRLPFELTAGQREVL-DVLSDGLAANRPLNRLLQGEVGSGKTI 323

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITG 357
           VA++AM   V+AG Q  ++AP  +LA QH   I+                    V ++TG
Sbjct: 324 VAVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRVALLTG 383

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           +M    +++    IA GQ  I+IGTHAL Q+++ ++ L +V+VDEQHRFGV+QR +L  K
Sbjct: 384 SMTAGQKKQVRAEIASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRDQLRAK 443

Query: 418 ATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDE 470
           A A   PH+L+MTATPIPRT+ LT  GD++ S + E P GR+PI T +I +      +D 
Sbjct: 444 APAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNVIFVKDKPAWLDR 503

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
              R+    + G++AY + P+I+E  +++ +  V
Sbjct: 504 AWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGV 537


>gi|307707904|ref|ZP_07644379.1| transcription-repair coupling factor [Streptococcus mitis NCTC
           12261]
 gi|307615969|gb|EFN95167.1| transcription-repair coupling factor [Streptococcus mitis NCTC
           12261]
          Length = 1167

 Score =  223 bits (569), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 147/399 (36%), Positives = 226/399 (56%), Gaps = 21/399 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q V++ 
Sbjct: 609 FPYVETDDQLRSIEEIKRDMQDSQPMDRLLVGDVGFGKTEVAMRAAFKAVNDNKQVVVLV 668

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +   
Sbjct: 669 PTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTETLEKLKNGQVDILIGTHRVLSK 728

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I
Sbjct: 729 DVVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVI 788

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  N  D VI R  V+  +  G + Y++  +++        ++ ++
Sbjct: 789 ETPPTNRYPVQTYVLEKN--DSVI-RDSVLREMERGGQVYYLYNKVD--------TIDQK 837

Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            + L E    +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838 VSKLQELIPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
           ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898 ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           A  DL  R  G +LG  QSG    +    EL+  LLE A
Sbjct: 958 AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEA 994


>gi|322433996|ref|YP_004216208.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX9]
 gi|321161723|gb|ADW67428.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX9]
          Length = 1233

 Score =  223 bits (569), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 157/459 (34%), Positives = 248/459 (54%), Gaps = 29/459 (6%)

Query: 192  DLLQK--KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            DL+QK   +    A   N + NP   K     + AR + A  ++    I L   RK  + 
Sbjct: 585  DLIQKYRSTETGPAPVLNKLGNPAWQK-----TKARVKKAMADMAGELIKLYAQRKAAQ- 638

Query: 250  EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
              G   + +  + ++     PF+ T  Q +AI DI +DM     M R+L GDVG GKT V
Sbjct: 639  --GTAFSPDNNLQREFEDAFPFNETDDQLAAIADIKRDMESTQPMDRLLCGDVGYGKTEV 696

Query: 310  ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            A+ A   AV+   Q  I+ P  +L+ QH+E  KK   N  + VE+++       + + +E
Sbjct: 697  AMRAAFKAVQDSKQVAILTPTTVLSFQHFESFKKRFANFPVKVEMLSRFRTAKEKAEIME 756

Query: 370  RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +   G+  I+IGTHA+    +++  L L++VDE+ RFGV+ + +L Q   A  VL M+AT
Sbjct: 757  QTEQGKVDILIGTHAVLGQKLKFQDLGLLVVDEEQRFGVRHKERLKQMRAAIDVLAMSAT 816

Query: 430  PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYW 487
            PIPRTL ++ +G  D+S I   P  R  I+T++    + DE + R  +++ L  G ++Y+
Sbjct: 817  PIPRTLHMSLVGLRDMSVIETPPKDRMAIQTIVA---KFDEKLVRTAIEMELERGGQSYF 873

Query: 488  ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII-HGRMSDIDKESVMDSFKNGTCKLLI 546
            +  ++E        ++ E  + + E   S+  I+ HG+M + + E VM +F N    +L+
Sbjct: 874  VHNRVE--------TIYEMASMIREQVPSARVIVGHGQMPEAELERVMLAFMNHEYDVLV 925

Query: 547  ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNS 604
            AT++IE G+D+  A+ III  A+  GL++L+QLRGRVGR    +   LL  P   L++ +
Sbjct: 926  ATSIIENGLDIPLANTIIINRADRHGLSELYQLRGRVGRSNRRAYAYLLIPPDTELTEIA 985

Query: 605  YTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
              RL+ LK   D   GF IA  DL+ R  G +LG +QSG
Sbjct: 986  RRRLAALKEFSDLGAGFKIAALDLELRGAGNMLGGEQSG 1024


>gi|268601549|ref|ZP_06135716.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID18]
 gi|268585680|gb|EEZ50356.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID18]
          Length = 1241

 Score =  223 bits (569), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ 
Sbjct: 661  LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 720

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VAL A   AV  G Q  ++AP  +L +QH + F  ++      +  +   N
Sbjct: 721  GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 780

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              +A  +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +  
Sbjct: 781  NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 839

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   
Sbjct: 840  ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 898

Query: 479  LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            L  G + +++  +++        ++ ER  +L     + I + HG++ + + E VM  F 
Sbjct: 899  LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 951

Query: 539  NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                 +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL   
Sbjct: 952  QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1011

Query: 599  PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             ++K++  RL  +   ++   GF +A +DL+ R  GEILG  QSG  + +     L+  +
Sbjct: 1012 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1069

Query: 656  LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            L+ A +D K    + PDL +  G +  I L+
Sbjct: 1070 LKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1098


>gi|239999138|ref|ZP_04719062.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            35/02]
 gi|268594974|ref|ZP_06129141.1| transcription-repair coupling factor [Neisseria gonorrhoeae 35/02]
 gi|268548363|gb|EEZ43781.1| transcription-repair coupling factor [Neisseria gonorrhoeae 35/02]
 gi|317164430|gb|ADV07971.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            TCDC-NG08107]
          Length = 1234

 Score =  223 bits (569), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ 
Sbjct: 654  LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 713

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VAL A   AV  G Q  ++AP  +L +QH + F  ++      +  +   N
Sbjct: 714  GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 773

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              +A  +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +  
Sbjct: 774  NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 832

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   
Sbjct: 833  ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 891

Query: 479  LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            L  G + +++  +++        ++ ER  +L     + I + HG++ + + E VM  F 
Sbjct: 892  LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 944

Query: 539  NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                 +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL   
Sbjct: 945  QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1004

Query: 599  PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             ++K++  RL  +   ++   GF +A +DL+ R  GEILG  QSG  + +     L+  +
Sbjct: 1005 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1062

Query: 656  LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            L+ A +D K    + PDL +  G +  I L+
Sbjct: 1063 LKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1091


>gi|225075726|ref|ZP_03718925.1| hypothetical protein NEIFLAOT_00742 [Neisseria flavescens
           NRL30031/H210]
 gi|224952997|gb|EEG34206.1| hypothetical protein NEIFLAOT_00742 [Neisseria flavescens
           NRL30031/H210]
          Length = 653

 Score =  223 bits (569), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 150/428 (35%), Positives = 233/428 (54%), Gaps = 17/428 (3%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 98  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 157

Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 158 QVAVLAPTTLLVEQHAQNFADRFADFPVKVAGLSRFNNSKA-TKAALEGMADGTVDIVIG 216

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 217 THKLVQDDIRFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 276

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 277 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 330

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 331 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 388

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
            III   + FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 389 TIIINRTDKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 448

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 449 TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 504

Query: 679 QSIRILLY 686
            +  I L+
Sbjct: 505 ITTEIKLH 512


>gi|240128422|ref|ZP_04741083.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            SK-93-1035]
          Length = 1234

 Score =  223 bits (569), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ 
Sbjct: 654  LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 713

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VAL A   AV  G Q  ++AP  +L +QH + F  ++      +  +   N
Sbjct: 714  GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 773

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              +A  +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +  
Sbjct: 774  NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 832

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   
Sbjct: 833  ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 891

Query: 479  LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            L  G + +++  +++        ++ ER  +L     + I + HG++ + + E VM  F 
Sbjct: 892  LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 944

Query: 539  NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                 +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL   
Sbjct: 945  QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1004

Query: 599  PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             ++K++  RL  +   ++   GF +A +DL+ R  GEILG  QSG  + +     L+  +
Sbjct: 1005 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1062

Query: 656  LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            L+ A +D K    + PDL +  G +  I L+
Sbjct: 1063 LKQAVRDLKK--GRRPDLDAPLGITTEIKLH 1091


>gi|320450396|ref|YP_004202492.1| transcription-repair coupling factor [Thermus scotoductus SA-01]
 gi|320150565|gb|ADW21943.1| transcription-repair coupling factor [Thermus scotoductus SA-01]
          Length = 980

 Score =  223 bits (569), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 137/400 (34%), Positives = 220/400 (55%), Gaps = 17/400 (4%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           I R  P   T  Q+ A++++L+D+     M R++ GDVG GKT +AL A    V  G Q 
Sbjct: 437 IERGFPHELTPDQKQALEEVLRDLEAPFPMDRLISGDVGFGKTEIALRAAHRVVGHGAQV 496

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
             + P  +LA+QH +  ++      + + +++   P+   +  LE +  G   I+IGTH 
Sbjct: 497 AFLVPTTLLAEQHGKTFRERFAGLPVRIGVLSRFTPEKEEKSILEGLEKGTLDIVIGTHR 556

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L Q  +++  L L+IVDE+HRFGV Q+ ++ +       L ++ATPIPRTL    +G  D
Sbjct: 557 LLQPDVRFKDLGLLIVDEEHRFGVAQKERIRELKAEVDTLYLSATPIPRTLYSALVGLKD 616

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRS 502
           +S I   P GRKPI+T + P + +  V E +   L  G K +++  ++   E +     +
Sbjct: 617 LSSIKTPPPGRKPIRTFLAPFDPL-LVREAILFELERGGKVFYVHDRVASIEARRRYLEN 675

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V           + I ++HG+M +   E  M  F  G   +L+ATT+IE G+DV +A+ 
Sbjct: 676 LVP---------EARIGVVHGQMPEGLVEETMLLFAEGAYDVLLATTIIESGLDVGEANT 726

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFL 619
           I+IE A+  GLA L+QLRGRVGR E+ +   L + P L++ +  RL+ + +  D   G L
Sbjct: 727 ILIERADRLGLATLYQLRGRVGRREQEAYAYLFHPPRLTEAAEKRLNAIADLSDLGSGHL 786

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           +AE+D++ R  G +LG +Q G  + L    E++  LLE A
Sbjct: 787 LAEKDMEIRGVGNLLGPEQHGHIRALSL--EVYSELLEEA 824


>gi|218249019|ref|YP_002374390.1| transcription-repair coupling factor [Cyanothece sp. PCC 8801]
 gi|218169497|gb|ACK68234.1| transcription-repair coupling factor [Cyanothece sp. PCC 8801]
          Length = 1158

 Score =  223 bits (569), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 144/408 (35%), Positives = 225/408 (55%), Gaps = 17/408 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L  K+ KKE G     +    +++  + P+ PT  Q  A++D+  D+     M R++ 
Sbjct: 577 LNLYAKRAKKE-GFIYPPDTPWQEELEDSFPYQPTPDQLKAVQDVKMDLESDRPMDRLVC 635

Query: 300 GDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           GDVG GKT VA+ A+  AV +G  Q  ++AP  IL QQHY  +K+      I + ++   
Sbjct: 636 GDVGFGKTEVAVRAIFKAVTSGHKQVALLAPTTILTQQHYHTLKERFAPYPINIGLLNRF 695

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              + ++  ++R+A G+  I++GTH L   S+++  L L+++DE+ RFGV Q+ K+    
Sbjct: 696 RTTSEKKDIVQRLATGELDIVVGTHQLLGQSVKFKNLGLLVIDEEQRFGVNQKEKIKVLK 755

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           T   VL +TATPIPRTL ++  G  +IS IT  P  R+PIKT +   N  D V   ++  
Sbjct: 756 TEVDVLTLTATPIPRTLYMSLSGIREISLITTPPPSRRPIKTHLSSYNP-DVVRTAIRNE 814

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           L  G + +++ P++E         + E    + +   S+ I I HG+M   D E  M  F
Sbjct: 815 LDRGGQIFYVVPRVE--------GIEEVAGQIQQMVPSARIVIAHGQMDVNDLEMTMLGF 866

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY- 596
            NG   +L+ TT+IE G+D+   + II+E+A+ FGL+QL+QLRGRVGR    +   LLY 
Sbjct: 867 NNGEADILVCTTIIESGLDIPRVNTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLLYP 926

Query: 597 -HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
               LS+ +  RL  L+       G+ +A  D++ R  G +LG +QSG
Sbjct: 927 NKGQLSETARQRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSG 974


>gi|167581546|ref|ZP_02374420.1| transcription-repair coupling factor [Burkholderia thailandensis
            TXDOH]
          Length = 1175

 Score =  223 bits (569), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 160/431 (37%), Positives = 232/431 (53%), Gaps = 23/431 (5%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 613  KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 672

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + FI ++      IVE+      +     A+++I  G   I+IGT
Sbjct: 673  VALLSPTTLLAEQHTQTFIDRFADWPVKIVELSRFKSTK-EVNAAIQQINDGSVDIVIGT 731

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 732  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 791

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500
             D S I   P  R  IKT    + R +E + R  ++  L  G + Y++  ++E  +  N 
Sbjct: 792  RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIE--NR 846

Query: 501  RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            R+++E          + I I HG+M + + E VM  F      +L+ TT+IE GIDV  A
Sbjct: 847  RAMLEELVP-----EARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 901

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
            + II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+  
Sbjct: 902  NTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELG 961

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+
Sbjct: 962  SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTA 1017

Query: 676  VRGQSIRILLY 686
                +  I L+
Sbjct: 1018 PLAATTEINLH 1028


>gi|237740991|ref|ZP_04571472.1| transcription-repair coupling factor [Fusobacterium sp. 4_1_13]
 gi|229431035|gb|EEO41247.1| transcription-repair coupling factor [Fusobacterium sp. 4_1_13]
          Length = 981

 Score =  223 bits (569), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 217/377 (57%), Gaps = 17/377 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF+ T +Q  AI+D+ +DM     M R++ GDVG GKT VA+ A   AV    Q +++ P
Sbjct: 452 PFTETPAQLKAIEDVKRDMESGKIMDRLICGDVGYGKTEVAIRATFKAVMDSKQVILLVP 511

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHYE   +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D 
Sbjct: 512 TTVLAEQHYERFNERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDD 571

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  + L+I+DE+ +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I 
Sbjct: 572 IKFKDVGLLIIDEEQKFGVKAKEKLKKIKGNIDVLTLTATPIPRTLNLSLLGIRDLSVID 631

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P GR+ I T  I  N+  I ++I     +  EG + ++I   ++  E K    R ++ 
Sbjct: 632 TSPEGRQKIHTEYIDNNKNLIKDII--FSEISREG-QVFYIFNSVKMIESKVKEIRELLP 688

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            +          +  IHG+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +II
Sbjct: 689 EY--------IKVGYIHGQMLPKDIKKNIQEFENGNIDVLVATTIIENGIDIENANTMII 740

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEE 623
           E  E  GL+Q++QLRGR+GR  + S C +L +   +KN+  R   ++  +   G  +A E
Sbjct: 741 EGVEKLGLSQVYQLRGRIGRSTKKSYCYMLMNENKTKNAKKREKSIREFDSLTGLDLAME 800

Query: 624 DLKQRKEGEILGIKQSG 640
           D K R  GEILG KQ G
Sbjct: 801 DSKIRGVGEILGEKQHG 817


>gi|258612325|ref|ZP_05711832.1| transcription-repair coupling factor [Listeria monocytogenes F6900]
 gi|258610889|gb|EEW23497.1| transcription-repair coupling factor [Listeria monocytogenes F6900]
          Length = 709

 Score =  223 bits (569), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T+ Q 
Sbjct: 103 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 160

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 161 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 220

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 221 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 280

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 281 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 340

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +   N   + E IER    L+   + Y++  ++E        S+ ++ + +      
Sbjct: 341 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 389

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+Q
Sbjct: 390 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 449

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR   I+    +Y     L + +  RLS +K  TE   GF IA  DL  R  
Sbjct: 450 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 509

Query: 631 GEILGIKQSG 640
           G ILG +Q G
Sbjct: 510 GNILGAQQHG 519


>gi|167619661|ref|ZP_02388292.1| transcription-repair coupling factor [Burkholderia thailandensis Bt4]
          Length = 1189

 Score =  223 bits (569), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 160/431 (37%), Positives = 232/431 (53%), Gaps = 23/431 (5%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 627  KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 686

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + FI ++      IVE+      +     A+++I  G   I+IGT
Sbjct: 687  VALLSPTTLLAEQHTQTFIDRFADWPVKIVELSRFKSTK-EVNAAIQQINDGSVDIVIGT 745

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 746  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 805

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500
             D S I   P  R  IKT    + R +E + R  ++  L  G + Y++  ++E  +  N 
Sbjct: 806  RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIE--NR 860

Query: 501  RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            R+++E          + I I HG+M + + E VM  F      +L+ TT+IE GIDV  A
Sbjct: 861  RAMLEELVP-----EARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 915

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
            + II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+  
Sbjct: 916  NTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELG 975

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+
Sbjct: 976  SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTA 1031

Query: 676  VRGQSIRILLY 686
                +  I L+
Sbjct: 1032 PLAATTEINLH 1042


>gi|108803751|ref|YP_643688.1| transcription-repair coupling factor [Rubrobacter xylanophilus DSM
           9941]
 gi|108764994|gb|ABG03876.1| transcription-repair coupling factor [Rubrobacter xylanophilus DSM
           9941]
          Length = 1054

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 142/412 (34%), Positives = 230/412 (55%), Gaps = 15/412 (3%)

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           +LAG+  LL +  +  +  G     +G+  +++  + P+  T  Q +AI  + +DM +  
Sbjct: 481 MLAGE--LLRLHAERARAEGFAFPPDGEWERELEESFPYQETPDQAAAIAAVKEDMQRPR 538

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++ GDVG GKT VA+ A   A  AG Q +++AP  IL QQHY   ++  +   + V
Sbjct: 539 PMDRLVCGDVGFGKTEVAVRAAFKAALAGKQTLMLAPTTILVQQHYRTFRERLERFAVRV 598

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
           E ++     A RR+ L  +A G+  I+IGTHAL    ++   L L++VDE+ RFGV+ + 
Sbjct: 599 ESLSRFTTAAERRRILRDLASGEVDILIGTHALLGAEVRPKDLGLLVVDEEQRFGVRHKE 658

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           ++ Q  T+  VL +TATPIPRT+ +   G  DIS I   PAGR+ + T + P +  +E++
Sbjct: 659 RIKQLKTSVDVLTLTATPIPRTMQMGLSGLRDISVIETPPAGRRSVLTHVGPYD--EELV 716

Query: 473 ER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
            R ++  ++ G + +++  ++E  +E+      +R   L        A+ HG+M +   E
Sbjct: 717 RRAIEREVARGGQVFFVHNRVETIEEA-----AQRLRELVPGV--RFAVAHGQMPERALE 769

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            VM  F  G   +L+ TT++E G+D+  A+ +I+E A+  GLAQL+QLRGR+GR  E + 
Sbjct: 770 EVMQRFLEGEADVLVTTTIVESGLDIATANTLIVERADAMGLAQLYQLRGRIGRSTEQAY 829

Query: 592 CILLYHPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
             L      +  +  RL  L + TE   GF +A  DL+ R  G +LG +QSG
Sbjct: 830 AYLFAPLGATLEAQRRLEALLDFTELGSGFAVAMRDLEIRGAGNLLGAEQSG 881


>gi|3914013|sp|O52236|MFD_MYXXA RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|2736296|gb|AAB94134.1| transcription-repair coupling factor [Myxococcus xanthus]
          Length = 1201

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 215/382 (56%), Gaps = 21/382 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +  F  T  Q  AI+D+L DM +   M R++ GDVG GKT VA+ A   A     Q  ++
Sbjct: 651  DFEFEETPDQAKAIEDVLADMQKPEPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVL 710

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +LAQQH+   KK   +  + VE+I+G       R+ L+R   G+  I+IGTH L  
Sbjct: 711  VPTTVLAQQHFLSFKKRFADYPVTVEVISGLKKAPEVREILKRAKEGKVDILIGTHKLLG 770

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              + + +L L+IVDE+ RFGV+Q+  L +  +   VL +TATPIPRTL ++  G  D+S 
Sbjct: 771  GEVAFKELGLMIVDEEQRFGVKQKESLKKWRSQIDVLTLTATPIPRTLHMSMSGVRDMSI 830

Query: 448  ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSV 503
            I   P  R+ I+T ++      + E IER    ++ G + +++  ++E     E+  R++
Sbjct: 831  IATPPQDRRAIRTFVMKYEDTVVKEAIER---EVARGGQVFFVHNRVESLPSIETQLRAL 887

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            V +          SI + HG+M +   E VM +F     ++L+ T++IE GID+  A+ +
Sbjct: 888  VPQV---------SIGVAHGQMGEGQLEKVMLAFTEKKYQVLLCTSIIESGIDISSANTM 938

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618
            I+  A+ FGLAQL+QLRGRVGR +E +   LL      ++K++  RL VL+N  +   GF
Sbjct: 939  IVNRADQFGLAQLYQLRGRVGRSKERAYAYLLVPSRRAVTKDAQRRLEVLQNFTELGAGF 998

Query: 619  LIAEEDLKQRKEGEILGIKQSG 640
             IA  DL+ R  G +LG KQSG
Sbjct: 999  SIASHDLEIRGAGNLLGDKQSG 1020


>gi|227894501|ref|ZP_04012306.1| transcriptional repair coupling factor [Lactobacillus ultunensis
           DSM 16047]
 gi|227863660|gb|EEJ71081.1| transcriptional repair coupling factor [Lactobacillus ultunensis
           DSM 16047]
          Length = 1164

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 144/431 (33%), Positives = 231/431 (53%), Gaps = 21/431 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +K  G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFDDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++     A  ++ +E +  G+  +++GTH L    + +  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLEDGKIDLVVGTHRLLSKDVHFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T +   IP    D  +  ++     G + +++  +I     S+    VE+   L  +  
Sbjct: 801 QTYVMEQIPSVVKDACLREMQ----RGGQVFYLYNRI-----SDIDETVEKLQQLIPN-- 849

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+Q
Sbjct: 850 ARIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQ 909

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF IA  DL  R  
Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGA 969

Query: 631 GEILGIKQSGM 641
           G +LG +Q G 
Sbjct: 970 GNMLGAQQHGF 980


>gi|171320492|ref|ZP_02909522.1| transcription-repair coupling factor [Burkholderia ambifaria MEX-5]
 gi|171094277|gb|EDT39354.1| transcription-repair coupling factor [Burkholderia ambifaria MEX-5]
          Length = 1156

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 159/431 (36%), Positives = 231/431 (53%), Gaps = 23/431 (5%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 596  KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 655

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F+ ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 656  VALLSPTTLLAEQHTQTFVDRFADWPVRIVELSRFKTTK-EVNAAIAQINEGTVDIVIGT 714

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 715  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500
             D S I   P  R  IKT +    R +E + R  ++  L  G + Y++  ++E  +  N 
Sbjct: 775  RDFSVIATAPQKRLAIKTFV---RREEESVMREAMLRELKRGGQVYFLHNEVETIE--NR 829

Query: 501  RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            R+++E          + I I HG+M + + E VM  F      +L+ TT+IE GIDV  A
Sbjct: 830  RAMLEALVP-----EARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 884

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
            + II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+  
Sbjct: 885  NTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELG 944

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+
Sbjct: 945  SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTA 1000

Query: 676  VRGQSIRILLY 686
                +  I L+
Sbjct: 1001 PLAATTEINLH 1011


>gi|257138824|ref|ZP_05587086.1| transcription-repair coupling factor [Burkholderia thailandensis
           E264]
          Length = 898

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 160/431 (37%), Positives = 232/431 (53%), Gaps = 23/431 (5%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 336 KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 395

Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++P  +LA+QH + FI ++      IVE+      +     A+++I  G   I+IGT
Sbjct: 396 VALLSPTTLLAEQHTQTFIDRFADWPVKIVELSRFKSTK-EVNAAIQQINDGSVDIVIGT 454

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 455 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 514

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500
            D S I   P  R  IKT    + R +E + R  ++  L  G + Y++  ++E  +  N 
Sbjct: 515 RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIE--NR 569

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           R+++E          + I I HG+M + + E VM  F      +L+ TT+IE GIDV  A
Sbjct: 570 RAMLEELVP-----EARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 624

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
           + II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+  
Sbjct: 625 NTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELG 684

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+
Sbjct: 685 SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTA 740

Query: 676 VRGQSIRILLY 686
               +  I L+
Sbjct: 741 PLAATTEINLH 751


>gi|221195325|ref|ZP_03568381.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626]
 gi|221185228|gb|EEE17619.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626]
          Length = 1150

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 206/377 (54%), Gaps = 13/377 (3%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  QESA+ DI  DM  +  M R+L GDVG GKT VAL A   A + G Q +I+ 
Sbjct: 607 FPYQMTPDQESALADIKLDMEARKPMDRLLCGDVGFGKTEVALRAAFKACQDGRQVMILC 666

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILAQQH+E          + V +++  +  A +RKALE  A G  ++++GTH L   
Sbjct: 667 PTTILAQQHFETFFSRFAPFGLQVAVLSRFVTPALQRKALEGFADGSVNVLVGTHRLLSA 726

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +  + L LVIVDE+ RFGVQ + +L        VL ++ATPIPRT+ +   G  D+S I
Sbjct: 727 DVNPHDLGLVIVDEEQRFGVQHKEQLKNMREQVDVLTLSATPIPRTMQMAMSGVRDMSLI 786

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P GRKP+K  +   +  D V   ++  L+   + Y++  ++     +     V R N
Sbjct: 787 MTPPPGRKPVKVTVGEYD-PDLVSAAIRAELARKGQVYYVSNRV-----TTIDDAVSRVN 840

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                  + + + HG+MS  + E VM  F+     +L+ATT+IE GID    + +IIE++
Sbjct: 841 EAAPE--ARVGVAHGQMSAREVEDVMLRFQEHEIDVLVATTIIESGIDNPHTNTLIIEDS 898

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
           E  GLAQL+QL+GRVGRG + +    ++    PL++ +  RL+ +   +D   G  IA  
Sbjct: 899 ERLGLAQLYQLKGRVGRGRQQAYAYFMFPAEMPLTEEATARLTAINEYQDLGSGMKIAMR 958

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G ++G +Q G
Sbjct: 959 DLEIRGAGSLMGAEQHG 975


>gi|115351983|ref|YP_773822.1| transcription-repair coupling factor [Burkholderia ambifaria AMMD]
 gi|115281971|gb|ABI87488.1| transcription-repair coupling factor [Burkholderia ambifaria AMMD]
          Length = 1185

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 159/431 (36%), Positives = 231/431 (53%), Gaps = 23/431 (5%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 625  KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 684

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F+ ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 685  VALLSPTTLLAEQHTQTFVDRFADWPVRIVELSRFKTTK-EVNAAIAQINEGTVDIVIGT 743

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 744  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 803

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500
             D S I   P  R  IKT +    R +E + R  ++  L  G + Y++  ++E  +  N 
Sbjct: 804  RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIE--NR 858

Query: 501  RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            R+++E          + I I HG+M + + E VM  F      +L+ TT+IE GIDV  A
Sbjct: 859  RAMLEELVP-----EARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 913

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
            + II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+  
Sbjct: 914  NTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELG 973

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+
Sbjct: 974  SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTA 1029

Query: 676  VRGQSIRILLY 686
                +  I L+
Sbjct: 1030 PLAATTEINLH 1040


>gi|268686819|ref|ZP_06153681.1| transcription-repair coupling factor [Neisseria gonorrhoeae
            SK-93-1035]
 gi|268627103|gb|EEZ59503.1| transcription-repair coupling factor [Neisseria gonorrhoeae
            SK-93-1035]
          Length = 1241

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ 
Sbjct: 661  LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 720

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VAL A   AV  G Q  ++AP  +L +QH + F  ++      +  +   N
Sbjct: 721  GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 780

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              +A  +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +  
Sbjct: 781  NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 839

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   
Sbjct: 840  ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 898

Query: 479  LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            L  G + +++  +++        ++ ER  +L     + I + HG++ + + E VM  F 
Sbjct: 899  LKRGGQVFFLHNEVD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 951

Query: 539  NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                 +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL   
Sbjct: 952  QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1011

Query: 599  PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             ++K++  RL  +   ++   GF +A +DL+ R  GEILG  QSG  + +     L+  +
Sbjct: 1012 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1069

Query: 656  LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            L+ A +D K    + PDL +  G +  I L+
Sbjct: 1070 LKQAVRDLKK--GRRPDLDAPLGITTEIKLH 1098


>gi|292493142|ref|YP_003528581.1| transcription-repair coupling factor [Nitrosococcus halophilus Nc4]
 gi|291581737|gb|ADE16194.1| transcription-repair coupling factor [Nitrosococcus halophilus Nc4]
          Length = 1158

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 135/381 (35%), Positives = 218/381 (57%), Gaps = 17/381 (4%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           R+ PF  T  Q  AI+ ++ D++ +  M R++ GDVG GKT VA+ A   A +AG Q  +
Sbjct: 605 RDFPFEETPDQADAIEAVIADLTSEKPMDRLVCGDVGFGKTEVAMRAAFIASQAGKQVAV 664

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  +LAQQH++  K    +  + VE+++    +  +   +  IA G+  I+IGTH L 
Sbjct: 665 LVPTTLLAQQHHQSFKDRFADWPVRVEVMSRFRSRKEQETIVNGIADGRVDIVIGTHKLL 724

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           Q++I +  L LVI+DE+HRFGV+Q+ ++        VL +TATPIPRTL ++  G  D+S
Sbjct: 725 QENIHFKDLGLVIIDEEHRFGVRQKERMKALRAEVDVLTLTATPIPRTLHMSLSGLRDLS 784

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVV 504
            I   PA R  IKT    + + D+ + R  ++  +  G + Y++  ++E     +   + 
Sbjct: 785 IIATPPARRLAIKTF---VRQWDDSLLREALLREIKRGGQIYFLHNEVE-----SIEKMA 836

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            R  +L     + + + HG+M + + E VM +F +    +L+ TT+IE GID+  A+ II
Sbjct: 837 HRVQTLFPE--AKVGVAHGQMRERELEQVMLNFYHRRFNVLVCTTIIETGIDIPSANTII 894

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619
           I  A+ FGLAQL+QLRGRVGR    +   L+  P   ++ ++  RL  +++ E+   GF 
Sbjct: 895 IHRADKFGLAQLYQLRGRVGRSHHRAYAYLIVPPRSVMTADAVKRLEAIESLEELGAGFT 954

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  D++ R  GE+LG  QSG
Sbjct: 955 LATHDMEIRGAGELLGKGQSG 975


>gi|295694758|ref|YP_003587996.1| transcription-repair coupling factor [Bacillus tusciae DSM 2912]
 gi|295410360|gb|ADG04852.1| transcription-repair coupling factor [Bacillus tusciae DSM 2912]
          Length = 1174

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 139/380 (36%), Positives = 213/380 (56%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI++I +DM Q   M R+L GDVG GKT VA+ A   AV  G Q  ++ P
Sbjct: 617 PYRETPDQLKAIEEIKRDMEQPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVP 676

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHYE  ++  Q   I +++++    +    + L+++  G   IIIGTH L Q  
Sbjct: 677 TTVLAQQHYETFRERFQGFPISIDVVSRFRTRGEMSQVLKQLRAGTVDIIIGTHRLLQKD 736

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+IVDE+ RFGV  + +L Q  T    L +TATPIPRTL ++ LG  D+S I 
Sbjct: 737 VKFKDLGLLIVDEEQRFGVTHKERLKQLKTNVDCLTLTATPIPRTLHMSMLGVRDLSIIE 796

Query: 450 EKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P  R P++T ++  + +   E IER    +  G + Y++  +++  E+   + R +V 
Sbjct: 797 TPPENRFPVQTYVLEYDDLLAKEAIER---EIGRGGQVYFLYNKVQDIEQMADHVRRLVP 853

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +A+ HG+M +   E VM  F +G   +L+ TT+IE G+D+ + + +I+
Sbjct: 854 ---------DAKVAVAHGQMPEDHLELVMLEFLHGEHDVLVTTTIIETGLDIPNVNTLIV 904

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            +A+H GL+QL+QLRGRVGR   I+     Y P   L++ +  RL  +K  TE   GF I
Sbjct: 905 YDADHLGLSQLYQLRGRVGRSSRIAYAYFTYQPEKVLTEVAEKRLQAIKEFTELGSGFKI 964

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +Q G
Sbjct: 965 ALRDLSIRGAGNLLGPEQHG 984


>gi|83720153|ref|YP_442612.1| transcription-repair coupling factor [Burkholderia thailandensis
            E264]
 gi|83653978|gb|ABC38041.1| transcription-repair coupling factor [Burkholderia thailandensis
            E264]
          Length = 1217

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 160/431 (37%), Positives = 232/431 (53%), Gaps = 23/431 (5%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 655  KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 714

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + FI ++      IVE+      +     A+++I  G   I+IGT
Sbjct: 715  VALLSPTTLLAEQHTQTFIDRFADWPVKIVELSRFKSTK-EVNAAIQQINDGSVDIVIGT 773

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 774  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 833

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500
             D S I   P  R  IKT    + R +E + R  ++  L  G + Y++  ++E  +  N 
Sbjct: 834  RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIE--NR 888

Query: 501  RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            R+++E          + I I HG+M + + E VM  F      +L+ TT+IE GIDV  A
Sbjct: 889  RAMLEELVP-----EARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 943

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
            + II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+  
Sbjct: 944  NTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELG 1003

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+
Sbjct: 1004 SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTA 1059

Query: 676  VRGQSIRILLY 686
                +  I L+
Sbjct: 1060 PLAATTEINLH 1070


>gi|300703955|ref|YP_003745557.1| transcription-repair ATP-dependent coupling factor, helicase
           [Ralstonia solanacearum CFBP2957]
 gi|299071618|emb|CBJ42942.1| transcription-repair ATP-dependent coupling factor, helicase
           [Ralstonia solanacearum CFBP2957]
          Length = 1147

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 147/415 (35%), Positives = 218/415 (52%), Gaps = 23/415 (5%)

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A ++  L  R+  ++    P+       +    +  F  T  Q +AI  ++ DM+    M
Sbjct: 570 AAELLNLYARRALRQGFAFPLTPNDY--EAFAESFGFDETPDQAAAITAVIADMTSGKPM 627

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QHY+ +     +  + +  
Sbjct: 628 DRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHYQTLADRFADWPVRIAE 687

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           I+    +     A+E I  G   I+IGTH L    +Q+ +L LVI+DE+HRFGV+Q+  L
Sbjct: 688 ISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVQFDRLGLVIIDEEHRFGVRQKEAL 747

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                   VL +TATPIPRTL +   G  D S I   P  R  IKT    + R ++ + R
Sbjct: 748 KTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTF---VRREEDSVLR 804

Query: 475 LKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
             ++  L  G + Y++  ++E  E K +   ++V           + +A+ HG+M + + 
Sbjct: 805 EAILRELKRGGQVYFLHNEVETIENKRAKLEALVPE---------ARVAVAHGQMHEREL 855

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR    +
Sbjct: 856 ERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSHHQA 915

Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
              LL H    L+K +  RL  ++  E+   GF +A  DL+ R  GE+LG KQSG
Sbjct: 916 YAYLLVHDAEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSG 970


>gi|148262223|ref|YP_001228929.1| transcription-repair coupling factor [Geobacter uraniireducens Rf4]
 gi|146395723|gb|ABQ24356.1| transcription-repair coupling factor [Geobacter uraniireducens Rf4]
          Length = 1159

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 154/457 (33%), Positives = 244/457 (53%), Gaps = 31/457 (6%)

Query: 220  WT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            W  + AR R A  E+ AG++  +   +Q ++  G   + + ++ Q+   +  F  T  Q+
Sbjct: 571  WEKTKARARAAIQEM-AGELLKIYAARQVEE--GHAFSPQDELYQEFEASFAFEETPDQQ 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+D+L DM  K  M R++ GDVG GKT VA+     AV  G Q  ++ P  ILAQQH 
Sbjct: 628  AAIEDVLHDMESKRPMDRLVCGDVGYGKTEVAMRGAFKAVMDGKQVALLVPTTILAQQHM 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + VE+++       ++  LE +  G+  IIIGTH L Q  + +  L L+
Sbjct: 688  ETFAERFKAYPVKVEMLSRFRSAKEQKAILEGVKKGEVDIIIGTHRLLQKDVVFKDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + +L Q      ++ +TATPIPRTL ++ +G  D+S I   P  R  I
Sbjct: 748  IIDEEQRFGVSHKERLKQFRAVVDIMTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLAI 807

Query: 459  KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--- 514
            KT +      DE+I E +   L  G + +++             + V+   ++ EH    
Sbjct: 808  KTFV--ARSSDELIREAVLRELRRGGQVFFV------------HNRVQTIGAMAEHLQQI 853

Query: 515  --TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IA+ HG+M + + E VM  F +G   LL+ TT+IE G+D+  A+ +I+  A+ FG
Sbjct: 854  VPEARIAVGHGQMDEKELERVMLGFMHGETNLLLCTTIIESGLDIPTANTLIVSRADTFG 913

Query: 573  LAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            L+QL+QLRGRVGR ++ +   LL      +S ++  RL +++   +   GF IA  DL+ 
Sbjct: 914  LSQLYQLRGRVGRSKQRAYAYLLIPGEGAISADARERLKIIQELTELGAGFRIATHDLEI 973

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            R  G++LG +QSG         EL+  LLE A +  K
Sbjct: 974  RGAGDLLGARQSG--DIAAVGFELYTELLEEAIRQLK 1008


>gi|217965700|ref|YP_002351378.1| transcription-repair coupling factor [Listeria monocytogenes HCC23]
 gi|217334970|gb|ACK40764.1| transcription-repair coupling factor [Listeria monocytogenes HCC23]
 gi|307569753|emb|CAR82932.1| transcription-repair coupling factor [Listeria monocytogenes L99]
          Length = 1179

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 142/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T+ Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +   N   + E IER    L+   + Y++  ++E        S+ ++ + +      
Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A  HG+M + + E+V+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+Q
Sbjct: 860 ARVATAHGQMGESELEAVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR   I+    +Y     L + +  RLS +K  TE   GF IA  DL  R  
Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979

Query: 631 GEILGIKQSG 640
           G ILG +Q G
Sbjct: 980 GNILGAQQHG 989


>gi|307702811|ref|ZP_07639761.1| transcription-repair coupling factor [Streptococcus oralis ATCC
           35037]
 gi|307623667|gb|EFO02654.1| transcription-repair coupling factor [Streptococcus oralis ATCC
           35037]
          Length = 1166

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 149/406 (36%), Positives = 230/406 (56%), Gaps = 25/406 (6%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV    Q V++ 
Sbjct: 608 FPYVETDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLV 667

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +   
Sbjct: 668 PTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQVDILIGTHRVLSK 727

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I
Sbjct: 728 DVVFSDLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVI 787

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
              P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++ +
Sbjct: 788 ETPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIDQ 835

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           + + L E    +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + 
Sbjct: 836 KVSELQELIPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLF 895

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFL 619
           IENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF 
Sbjct: 896 IENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFK 955

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
           IA  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 956 IAMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 999


>gi|293364521|ref|ZP_06611246.1| transcription-repair coupling factor [Streptococcus oralis ATCC
            35037]
 gi|291317029|gb|EFE57457.1| transcription-repair coupling factor [Streptococcus oralis ATCC
            35037]
          Length = 1167

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 149/406 (36%), Positives = 230/406 (56%), Gaps = 25/406 (6%)

Query: 269  IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             P+  T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV    Q V++ 
Sbjct: 609  FPYVETDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLV 668

Query: 329  PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            P  +LAQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +   
Sbjct: 669  PTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQVDILIGTHRVLSK 728

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I
Sbjct: 729  DVVFSDLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVI 788

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
               P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++ +
Sbjct: 789  ETPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVD--------TIDQ 836

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            + + L E    +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + 
Sbjct: 837  KVSELQELIPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLF 896

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFL 619
            IENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF 
Sbjct: 897  IENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFK 956

Query: 620  IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            IA  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 957  IAMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|186475762|ref|YP_001857232.1| transcription-repair coupling factor [Burkholderia phymatum STM815]
 gi|184192221|gb|ACC70186.1| transcription-repair coupling factor [Burkholderia phymatum STM815]
          Length = 1164

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 167/478 (34%), Positives = 247/478 (51%), Gaps = 29/478 (6%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++    P++    +  K   +  F  T  Q 
Sbjct: 556  QWEKAKRKAAQQIRDTAAELLNLYARRAMREGHAFPLDPRDYV--KFAESFGFEETPDQA 613

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 614  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 673

Query: 339  E-FIKKYTQNTQIIVEII---TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            + F  +++     I E+    TG    A    ++++I  G   I+IGTH L    +Q+ +
Sbjct: 674  QTFTDRFSDWPVRIAELSRFKTGKEVSA----SIQQINEGSVDIVIGTHKLLSSDVQFKR 729

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  
Sbjct: 730  LGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQK 789

Query: 455  RKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R  IKT +      D VI E +   L  G + Y++  ++E  +  N R ++E        
Sbjct: 790  RLAIKTFVR--REEDGVIREAMLRELKRGGQVYFLHNEVETIE--NRRQMLEALVP---- 841

Query: 514  FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              + IA+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGL
Sbjct: 842  -EARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRADKFGL 900

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
            AQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+   GF +A  DL+ R
Sbjct: 901  AQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGAGFYLAMHDLEIR 960

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
              GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 961  GTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1014


>gi|290894278|ref|ZP_06557245.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J2-071]
 gi|290556162|gb|EFD89709.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J2-071]
          Length = 1179

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 142/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T+ Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +   N   + E IER    L+   + Y++  ++E        S+ ++ + +      
Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A  HG+M + + E+V+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+Q
Sbjct: 860 ARVATAHGQMGESELEAVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 919

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR   I+    +Y     L + +  RLS +K  TE   GF IA  DL  R  
Sbjct: 920 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 979

Query: 631 GEILGIKQSG 640
           G ILG +Q G
Sbjct: 980 GNILGAQQHG 989


>gi|158321662|ref|YP_001514169.1| transcription-repair coupling factor [Alkaliphilus oremlandii
           OhILAs]
 gi|158141861|gb|ABW20173.1| transcription-repair coupling factor [Alkaliphilus oremlandii
           OhILAs]
          Length = 1174

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 145/428 (33%), Positives = 231/428 (53%), Gaps = 17/428 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW     +     E +AG++  L   ++  K  G   + +    ++     P+  T  Q 
Sbjct: 574 EWAKTKTKVKKAIEDMAGELIKLYAEREKTK--GHAFSPDSDWQKQFEELFPYEETPDQL 631

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             I+++ QDM ++  M R+L GDVG GKT VA+ A   AV    Q   + P  ILAQQHY
Sbjct: 632 RCIEEVKQDMEKERAMDRLLCGDVGYGKTEVAIRAAFKAVGDSKQVAFLVPTTILAQQHY 691

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              K+   +  I VE+++       ++K +E I  G   I+IGTH L    I+Y  L L+
Sbjct: 692 NTFKQRFSDFPITVEMLSRFKNATAQKKIIENIRTGNVDIVIGTHRLLSKDIEYKDLGLL 751

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ +  L +   +  VL +TATPIPRTL ++ +G  D+S I + P  R P+
Sbjct: 752 IVDEEQRFGVKHKEALKKLKKSIDVLTLTATPIPRTLHMSMIGIRDMSVIEDPPEERFPV 811

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSS 517
           +T ++  +    V++ +   L+ G + Y++  +++         + +  N+L E      
Sbjct: 812 QTYVLGYSE-SMVVDAISRELARGGQVYYVYNRVQ--------GIHQVANNLKELVPQGR 862

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A+ HG+MS+ + E +M  + NG   +L++TT+IE G+D+ + + III++A+  GL+QL+
Sbjct: 863 VAVAHGQMSERELEKIMLEYMNGEYDILVSTTIIETGMDISNVNTIIIQDADKLGLSQLY 922

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGE 632
           QLRGRVGR        L+Y     LS+ +  RL  +K  TE   GF IA  DL+ R  G 
Sbjct: 923 QLRGRVGRSYRQGYAYLMYEKDKILSEVAEKRLKAIKEFTEFGSGFKIAMRDLEIRGAGN 982

Query: 633 ILGIKQSG 640
           +LG +Q G
Sbjct: 983 LLGGEQHG 990


>gi|284046682|ref|YP_003397022.1| transcription-repair coupling factor [Conexibacter woesei DSM
           14684]
 gi|283950903|gb|ADB53647.1| transcription-repair coupling factor [Conexibacter woesei DSM
           14684]
          Length = 1112

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 151/429 (35%), Positives = 228/429 (53%), Gaps = 21/429 (4%)

Query: 220 W-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           W T  AR R A  E+ AG+  LL +  + K+  G     +    ++     P+  T  Q 
Sbjct: 519 WDTLKARARRAAQEM-AGE--LLNLYAERKRRAGHAFPPDSDWMREFEDAWPYRETPDQR 575

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI+ +  DM     M R++ GDVG GKT VAL A   A   G Q +++ P  ILAQQHY
Sbjct: 576 EAIEQVKTDMETARPMDRLICGDVGYGKTEVALRAAFKAANDGRQVMVLVPTTILAQQHY 635

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +  ++    +E ++   P A +R A+     G   I+IGTH L    ++   L L+
Sbjct: 636 GTFAERLKDYPFTIEHVSRFRPAAEQRAAIRAFTEGSVDILIGTHRLLSRDVRPRDLGLL 695

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+Q+  L Q      V+ M+ATPIPRTL ++  G  DIS I   P GR+P+
Sbjct: 696 IVDEEQRFGVKQKELLRQLKLKVDVIAMSATPIPRTLQMSIAGIRDISVIETPPEGRRPV 755

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           KT +   +   +   IER +   S G +A+++  ++E   E+      ER  +L     +
Sbjct: 756 KTYVGEYDEQLVKSAIERER---SRGGQAFFLHNRVETIDET-----AERLRALCPE--A 805

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
              + HG++ +   E  M  F  G   +L+AT++IE GID+  A+ +++E A+ FGL+QL
Sbjct: 806 RFEVAHGQLDEKTLEERMLRFLRGEADVLVATSIIESGIDIPQANTLMVERADLFGLSQL 865

Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +Q+RGRVGR  E +   LLY     L+ ++  RLS L +  +   GF +A  DL+ R  G
Sbjct: 866 YQIRGRVGRSRERAYAYLLYPSASALTADAAQRLSALSDYTELGAGFKVAMRDLEIRGAG 925

Query: 632 EILGIKQSG 640
            +LG +QSG
Sbjct: 926 NLLGDEQSG 934


>gi|116617523|ref|YP_817894.1| transcription-repair coupling factor [Leuconostoc mesenteroides
            subsp. mesenteroides ATCC 8293]
 gi|116096370|gb|ABJ61521.1| transcription-repair coupling factor [Leuconostoc mesenteroides
            subsp. mesenteroides ATCC 8293]
          Length = 1179

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 149/465 (32%), Positives = 252/465 (54%), Gaps = 26/465 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A  +  L  +++ ++    P +   +I  K   +  +  T  Q 
Sbjct: 567  EWAKTKRQVAAKIEDIADDLLELYAKREAQQGYVFPPDDHAQI--KFDDSFGYPETPDQI 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I  DM +   M R+L GDVG GKT VAL A+  A  +G Q   +AP  IL QQHY
Sbjct: 625  RSIEEIKVDMQKLRPMDRLLVGDVGFGKTEVALRAVFKAAHSGKQVAFLAPTTILVQQHY 684

Query: 339  E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E  + +++   +I + +++        +  +E++ + +  +++GTH L    + +  L L
Sbjct: 685  ETMLARFSDFPEIKIGVLSRFQTPTQNKMIIEQLQNHEIDVVVGTHRLLSKDVDFSDLGL 744

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +I+DE+ RFGV+ + +L Q  T+  VL +TATPIPRTL +  +G  D+S I   PA R P
Sbjct: 745  LIIDEEQRFGVKHKERLKQLRTSVDVLTLTATPIPRTLNMAMVGARDLSVIETPPANRYP 804

Query: 458  IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            I+T ++ ++   + + IE  K +   G+  Y         + ++   +V +   L    +
Sbjct: 805  IQTYVLAMDWKIVRDAIE--KEITRNGQVFYL------HNRVADLDRIVSQIEELIP--S 854

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + +A IHG+MS+   ES++  F NG   +L+ TT+IE G+D+ +A+ +I+ENA+H GLAQ
Sbjct: 855  ARVAAIHGQMSETQLESILYDFLNGQYDVLVTTTIIETGVDIPNANTLIVENADHMGLAQ 914

Query: 576  LHQLRGRVGRGEEISSCILLY---HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            L+QLRGRVGR   ++     Y     P S+ +  RL  +++ TE   GF IA  DL  R 
Sbjct: 915  LYQLRGRVGRSTRLAYAYFTYPFTRTP-SEEAEKRLEAIRDFTELGSGFRIAMRDLSIRG 973

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQDPD 672
             G++LG +Q G    +    +++  +L+  +A+K  K +    P+
Sbjct: 974  AGDLLGKQQHGFIDSV--GYDMYTQMLKDTVAQKQGKQVTASQPE 1016


>gi|260072636|gb|ACX30534.1| transcription-repair coupling factor [uncultured SUP05 cluster
           bacterium]
 gi|269468648|gb|EEZ80288.1| transcription-repair coupling factor (superfamily II helicase)
           [uncultured SUP05 cluster bacterium]
          Length = 1143

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 144/381 (37%), Positives = 216/381 (56%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q   ++++L DM     M R++ GDVG GKT +A+ A   AVE+G Q  I+
Sbjct: 596 SFPFEETPDQLKTMEEVLADMQSTKPMDRLVCGDVGFGKTEIAMRAAFIAVESGKQVAIL 655

Query: 328 APIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P  +LA QH++ F  ++      I  +     P+  ++  L  +  G+  IIIGTH L 
Sbjct: 656 VPTTLLANQHHQSFADRFINYPIEISSLSRFQTPKEQKQIKL-LLLEGKIDIIIGTHKLI 714

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DI 445
           Q SI+Y  L LVI+DE+HRFGV+Q+  L +      +L MTATPIPRTL + +LG + ++
Sbjct: 715 QGSIKYKNLGLVIIDEEHRFGVKQKESLKKFRGQSDILTMTATPIPRTLNM-ALGSLREL 773

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I   P GR  I+T +   N  + V E     L  G + + +   I+     N   +++
Sbjct: 774 SIIATPPQGRSAIQTFVNEWND-NTVKEACSRELHRGGQIFVLHNDIDSI--DNMAQILK 830

Query: 506 RFN-SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               ++H      + I HG+M   + E +M  F +G  ++L+ TT+IE GID+ +A+ II
Sbjct: 831 DLMPNIH------VRIAHGQMPSKELERIMSDFYHGRFQILVCTTIIETGIDIPNANTII 884

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFL 619
           I NA++FGLAQLHQLRGRVGR    +   L+   H  LSKN+  RL  +++ E+   GF+
Sbjct: 885 INNAQNFGLAQLHQLRGRVGRSHHRAYAYLVIKSHQSLSKNAKKRLDAIESLEELGAGFM 944

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  G++LG  QSG
Sbjct: 945 LANHDLEIRGAGDLLGDNQSG 965


>gi|260440312|ref|ZP_05794128.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            DGI2]
 gi|291043604|ref|ZP_06569320.1| transcription-repair coupling factor [Neisseria gonorrhoeae DGI2]
 gi|291012067|gb|EFE04056.1| transcription-repair coupling factor [Neisseria gonorrhoeae DGI2]
          Length = 1234

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ 
Sbjct: 654  LLNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVC 713

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
            GDVG GKT VAL A   AV  G Q  ++AP  +L +QH + F  ++      +  +   N
Sbjct: 714  GDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFN 773

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              +A  +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +  
Sbjct: 774  NSKA-TKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLR 832

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   
Sbjct: 833  ANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRE 891

Query: 479  LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            L  G + +++  +++        ++ ER  +L     + I + HG++ + + E VM  F 
Sbjct: 892  LKRGGQVFFLHNELD-----TIENMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFL 944

Query: 539  NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                 +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL   
Sbjct: 945  QQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPE 1004

Query: 599  PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             ++K++  RL  +   ++   GF +A +DL+ R  GEILG  QSG  + +     L+  +
Sbjct: 1005 YITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEM 1062

Query: 656  LEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            L+ A +D K    + PDL +  G +  I L+
Sbjct: 1063 LKQAVRDLKK--GRRPDLDAPLGITTEIKLH 1091


>gi|222152152|ref|YP_002561312.1| transcription-repair coupling factor [Macrococcus caseolyticus
           JCSC5402]
 gi|222121281|dbj|BAH18616.1| transcription-repair coupling factor [Macrococcus caseolyticus
           JCSC5402]
          Length = 1166

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 143/381 (37%), Positives = 211/381 (55%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+ PT  Q+ ++ +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYEPTHDQKQSLIEIKGDMEKSKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE I +  Q+  + V++++         +  + +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETIIERMQDYPVEVQMMSRFRTTKEVNETKKGLKSGFVDIVVGTHKLLG 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I Y  L L+IVDE+ RFGV  + K+    T   VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIVYKDLGLLIVDEEQRFGVTHKEKIKALKTNVDVLTLTATPIPRTLHMSLLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++    N I E +ER    LS   + +++  ++         ++ +
Sbjct: 794 IETPPENRFPVQTYVLEYQHNFIKEAMER---ELSRNGQVFYLYNRV--------ATIYQ 842

Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      + IA+ HG+MS+ + E  M  F NG   +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KAEQLEMMMPDARIAVAHGQMSERELEETMLGFINGEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619
           IE+A+ FGL+QL+QLRGRVGR   IS    L+ P   L++ +  RL  +K  TE   GF 
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSNRISYAYFLHAPNKVLTEVAEQRLQAIKEFTELGSGFK 962

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           IA  DL  R  G +LG +Q G
Sbjct: 963 IAMRDLNIRGAGNLLGKQQHG 983


>gi|170699745|ref|ZP_02890779.1| transcription-repair coupling factor [Burkholderia ambifaria
            IOP40-10]
 gi|170135336|gb|EDT03630.1| transcription-repair coupling factor [Burkholderia ambifaria
            IOP40-10]
          Length = 1156

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 159/431 (36%), Positives = 231/431 (53%), Gaps = 23/431 (5%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 596  KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 655

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F+ ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 656  VALLSPTTLLAEQHTQTFVDRFADWPVRIVELSRFKTTK-EVNAAIAQINEGTVDIVIGT 714

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 715  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500
             D S I   P  R  IKT +    R +E + R  ++  L  G + Y++  ++E  +  N 
Sbjct: 775  RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIE--NR 829

Query: 501  RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            R+++E          + I I HG+M + + E VM  F      +L+ TT+IE GIDV  A
Sbjct: 830  RAMLEELVP-----EARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 884

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
            + II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+  
Sbjct: 885  NTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELG 944

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+
Sbjct: 945  SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTA 1000

Query: 676  VRGQSIRILLY 686
                +  I L+
Sbjct: 1001 PLAATTEINLH 1011


>gi|257871350|ref|ZP_05651003.1| transcription-repair coupling factor [Enterococcus gallinarum EG2]
 gi|257805514|gb|EEV34336.1| transcription-repair coupling factor [Enterococcus gallinarum EG2]
          Length = 1173

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 140/431 (32%), Positives = 235/431 (54%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  A  E +A  + LL  +++ +K  G     +    ++     P+S T  Q 
Sbjct: 568 EWAKTKRKVSAKIEDIADDLILLYAKRESEK--GYAFQPDDGYQKEFEDAFPYSETDDQL 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 626 RSTAEIKRDMEKEKPMDRLLVGDVGFGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +    +   + V +++    +  + + +E++  GQ  I++GTH L    +++  L L+
Sbjct: 686 ETMLDRFEGFPVNVGLLSRFRTKKQQTETIEQVKKGQIDILVGTHRLLSKDVEFADLGLL 745

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746 VIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 805

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +T ++ +N   + E I R    ++ G + +++  +++  E+K    +++V          
Sbjct: 806 QTYVMEMNPGAVREAILR---EMARGGQVFYLYNRVDTIERKVEELQALVP--------- 853

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I   HG+M++I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 854 DARIGYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 913

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 914 TLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 973

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 974 AGNLLGAQQHG 984


>gi|329731067|gb|EGG67439.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 1168

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTSKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|113475354|ref|YP_721415.1| transcription-repair coupling factor [Trichodesmium erythraeum
           IMS101]
 gi|110166402|gb|ABG50942.1| transcription-repair coupling factor [Trichodesmium erythraeum
           IMS101]
          Length = 1180

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/414 (33%), Positives = 228/414 (55%), Gaps = 21/414 (5%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + LL +  Q  ++ G     +    +++  + P+ PT  Q  A +D+ +DM  +  M R+
Sbjct: 587 VDLLKLYAQRAQQTGYSFPPDTPWQEEMEDSFPYQPTPDQLKATQDVKRDMESERAMDRL 646

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA+ A+  AV A  Q   +AP  +L QQHY  +K+      I + ++  
Sbjct: 647 VCGDVGFGKTEVAIRAIFKAVIAEKQVAFLAPTTVLTQQHYHTLKERFAPYPIEIGLLNR 706

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 +++   R+A G+  II+GTH++   +IQ+ +L L++VDE+ RFGV Q+ K+   
Sbjct: 707 FRTPNEKKEIQHRLATGELDIIVGTHSILSKTIQFRELGLLVVDEEQRFGVNQKEKIKAL 766

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                VL +TATPIPRTL +   G  ++S IT  P  R+PIKT + P + ++     ++ 
Sbjct: 767 KAEVDVLTLTATPIPRTLYMALSGIREMSVITTPPPLRRPIKTHLAPYD-LETARTAIRQ 825

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDS 536
            L+ G + +++ P+IE         + E    L E    + I I HG+M   + ES+M +
Sbjct: 826 ELNRGGQVFYVVPRIE--------GIEELAGKLREMIPGARINIGHGKMDAAELESIMLT 877

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   +L+ TT+IE G+D+   + I+IE+A+ FGL+QL+QLRGRVGR   + +   L+
Sbjct: 878 FSAGEADILVCTTIIESGLDIPRVNTILIEDAQKFGLSQLYQLRGRVGRA-GVQAHAWLF 936

Query: 597 HP-------PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           +P        L+ ++  RL  ++       G+ +A  DL+ R  G+ILG +QSG
Sbjct: 937 YPTTSSGGIALTDDAQKRLRAIQEFTQLGSGYHLAIRDLEIRGAGDILGAEQSG 990


>gi|306828591|ref|ZP_07461785.1| transcription-repair coupling factor [Streptococcus mitis ATCC 6249]
 gi|304429199|gb|EFM32285.1| transcription-repair coupling factor [Streptococcus mitis ATCC 6249]
          Length = 1167

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 149/407 (36%), Positives = 230/407 (56%), Gaps = 27/407 (6%)

Query: 269  IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             P+  T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV    Q V++ 
Sbjct: 609  FPYIETDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLV 668

Query: 329  PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            P  +LAQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +   
Sbjct: 669  PTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQVDILIGTHRVLSK 728

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I
Sbjct: 729  DVVFSDLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVI 788

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSV 503
               P  R P++T ++  N  D VI     VL E   G + Y++  +++  ++K S  + +
Sbjct: 789  ETPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVDTIDRKVSELQEL 844

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +           +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ +
Sbjct: 845  IPE---------ASIGFVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTL 895

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGF 618
             IENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF
Sbjct: 896  FIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGF 955

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
             IA  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 956  KIAMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|317126795|ref|YP_004093077.1| transcription-repair coupling factor [Bacillus cellulosilyticus DSM
           2522]
 gi|315471743|gb|ADU28346.1| transcription-repair coupling factor [Bacillus cellulosilyticus DSM
           2522]
          Length = 1185

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 137/396 (34%), Positives = 221/396 (55%), Gaps = 17/396 (4%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   + +G   ++   + P+  T+ Q  AI++I +DM  +  M R+L GDVG GKT VAL
Sbjct: 603 GFAFSKDGPEQREFESSFPYQETEDQIRAIEEIKKDMELERPMDRLLCGDVGYGKTEVAL 662

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   A+  G Q   + P  ILAQQHYE I++  Q+  +   I+     +  +++ ++ +
Sbjct: 663 RAAFKAIMDGKQVAFLVPTTILAQQHYETIRERFQDFAVNTSILNRFRSRKEQQETMKGL 722

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G   I++GTH L    I +  L L+IVDE+ RFGV  + K+ +      VL +TATPI
Sbjct: 723 NKGTVDIVVGTHRLLSKDITFENLGLLIVDEEQRFGVTHKEKIKKLKANVDVLTLTATPI 782

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489
           PRTL ++ LG  D+S I   P  R P++T ++  N   + E IER    L+ G + +++ 
Sbjct: 783 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNEGLVKEAIER---ELARGGQVFYLY 839

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +++     +   V ++ + L     +++  +HGRM++ + ESVM  F +G   +L+ TT
Sbjct: 840 NRVD-----DIEVVNDKISMLVPE--ANVRFVHGRMTESELESVMLEFLDGNVDVLVTTT 892

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
           +IE G+D+ + + +II+NA+  GL+QL+QLRGRVGR   ++     +     L++ +  R
Sbjct: 893 IIETGVDIPNVNTLIIDNADKMGLSQLYQLRGRVGRSNRVAYAYFTHQRDKVLTEVAEKR 952

Query: 608 LSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
           L  +K  TE   GF IA  DL  R  G +LG +Q G
Sbjct: 953 LQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|85711280|ref|ZP_01042339.1| Transcription-repair coupling factor, superfamily II helicase
           [Idiomarina baltica OS145]
 gi|85694781|gb|EAQ32720.1| Transcription-repair coupling factor, superfamily II helicase
           [Idiomarina baltica OS145]
          Length = 1159

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/398 (35%), Positives = 214/398 (53%), Gaps = 21/398 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G    ++    Q+   + PF  T  Q +AI  ++QDM+  + M R++ GDVG GKT VA+
Sbjct: 593 GYGFTIDADDYQRFADSFPFEETTDQLNAINAVVQDMAAPHPMDRLVCGDVGFGKTEVAM 652

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV    Q +++ P  +LAQQHY+  K    +  + +E+++        ++ +   
Sbjct: 653 RAAFIAVNDSRQVMVLVPTTLLAQQHYDNFKDRFADWPVRIEVLSRFKTAKQSKQIIADT 712

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             GQ  I+IGTH L Q  I    L L+IVDE+HRFGV+Q+  + +      +L +TATPI
Sbjct: 713 ESGQVDILIGTHKLLQGDINAKALGLLIVDEEHRFGVRQKEAIKRLRANVDILTLTATPI 772

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489
           PRTL +      D+S I   PA R  +KT +   +   I E I R  +    G + Y++ 
Sbjct: 773 PRTLNMAMNNIRDLSIIATPPARRLAVKTFVREHDNATIREAILRETL---RGGQVYFLH 829

Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             ++  EK      ++V           +S+ + HG+M + + E +M  F +    +L+ 
Sbjct: 830 NNVDTIEKTAREIEALVPE---------ASVTVAHGQMRERELERIMSDFYHQRFNVLVC 880

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSY 605
           TT+IE GIDV  A+ III+ A+H GLAQLHQLRGRVGR    +   LL  HP  ++K++ 
Sbjct: 881 TTIIETGIDVPSANTIIIDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAL 940

Query: 606 TRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            RL  +   ED   GF++A  DL+ R  GE+LG  QSG
Sbjct: 941 KRLEAIAQLEDLGAGFMLATHDLEIRGAGELLGDDQSG 978


>gi|296314532|ref|ZP_06864473.1| transcription-repair coupling factor [Neisseria polysaccharea ATCC
           43768]
 gi|296838843|gb|EFH22781.1| transcription-repair coupling factor [Neisseria polysaccharea ATCC
           43768]
          Length = 753

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/428 (35%), Positives = 233/428 (54%), Gaps = 17/428 (3%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT V L A   AV  G 
Sbjct: 190 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVVLRAAFVAVMGGK 249

Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 250 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 308

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 309 THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 368

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 369 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 422

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 423 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 480

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
            III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 481 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 540

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 541 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 596

Query: 679 QSIRILLY 686
            +  I L+
Sbjct: 597 ITTEIKLH 604


>gi|302669664|ref|YP_003829624.1| transcription-repair coupling factor Mfd [Butyrivibrio
            proteoclasticus B316]
 gi|302394137|gb|ADL33042.1| transcription-repair coupling factor Mfd [Butyrivibrio
            proteoclasticus B316]
          Length = 1191

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 147/453 (32%), Positives = 241/453 (53%), Gaps = 21/453 (4%)

Query: 197  KSFPSIAEAFNIIHNPR--KAKDFEWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
            + + S  +     H P+  K    EW+ + ++ + A +E+    + L   R++ K     
Sbjct: 560  QKYASGGDDSETTHKPKLNKLGSVEWSHTKSKVKAAVEEVAQDLVELYAKRQEAKGHQFS 619

Query: 254  PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            P  V     Q+     P+  T  Q +AI+D  +DM     M R++ GDVG GKT +A+ A
Sbjct: 620  PDTV---WQQEFEDAFPYQETDDQLTAIEDTKRDMESGIIMDRLVCGDVGFGKTEIAIRA 676

Query: 314  MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
               AV+ G Q  ++ P  ILAQQHY    +  ++  + V++++     A ++K +  +  
Sbjct: 677  AFKAVQDGKQVAVLVPTTILAQQHYNTFSERMRDFPVRVDLMSRFRTAAEQKKTIVDLKK 736

Query: 374  GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            G   I+IGTH L    +QY  L L+IVDE+ RFGV  + KL        VL ++ATPIPR
Sbjct: 737  GLVDIVIGTHRLLSKDVQYKDLGLLIVDEEQRFGVTHKEKLKTLKENIDVLTLSATPIPR 796

Query: 434  TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
            TL ++ +G  ++S + E P  R PI+T ++  N  DE+I E +   L+   + Y++  ++
Sbjct: 797  TLHMSLVGIREMSVLEEAPNDRMPIQTYVMEYN--DELIREAIARELARNGQVYYVYNRV 854

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 +    V  +   L     +++A  HG+M + + E +M  F +GT  +L++TT+IE
Sbjct: 855  -----NTIADVAAQIQKLVPE--ANVAFAHGQMKESELERIMYDFIDGTIDVLVSTTIIE 907

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV 610
             G+D+ + + +II +++  GL+QL+QLRGRVGR    +   L+Y     L + +  RLS 
Sbjct: 908  TGLDIPNVNTMIIHDSDKMGLSQLYQLRGRVGRSNRTAYAFLMYKKDKMLKEVAEKRLSA 967

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            ++   D   GF IA  DL+ R  G +LG KQSG
Sbjct: 968  IREFTDLGSGFKIAMRDLEIRGAGSLLGRKQSG 1000


>gi|283768938|ref|ZP_06341847.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
            aureus H19]
 gi|283461119|gb|EFC08205.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
            aureus H19]
          Length = 1168

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/418 (35%), Positives = 226/418 (54%), Gaps = 23/418 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614  DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674  VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734  KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448  ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794  IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843  KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
            IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903  IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
             IA  DL  R  G +LG +Q G         +L+  +LE A  + + I   + D+  V
Sbjct: 962  KIAMRDLNIRGAGNLLGKQQHGFID--TVGFDLYSQMLEEAVNEKRGIKEPESDVPEV 1017


>gi|254786005|ref|YP_003073434.1| transcription-repair coupling factor [Teredinibacter turnerae
           T7901]
 gi|237683594|gb|ACR10858.1| transcription-repair coupling factor [Teredinibacter turnerae
           T7901]
          Length = 1157

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 211/381 (55%), Gaps = 21/381 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T  Q+SAI+ +  DM     M R++ GDVG GKT VA+ A   AV+   Q  ++ 
Sbjct: 608 FPFEETPDQQSAIRAVRDDMLSAQPMDRLVCGDVGFGKTEVAMRAAFIAVQNSKQVAVLV 667

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQH++  K    +  + +E+++    Q       +R+  G   I+IGTH L   
Sbjct: 668 PTTLLAQQHFDNFKDRFADWPVNIEVVSRFRSQKELTNVQQRLEQGSVDILIGTHKLILG 727

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +Y  L LVI+DE+HRFGV+Q+  L    T   +L +TATPIPRTL ++  G  D+S I
Sbjct: 728 DFKYPNLGLVIIDEEHRFGVRQKEALKALRTEVDILTLTATPIPRTLNMSMNGIRDLSII 787

Query: 449 TEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
              PA R  +KT +     N I E I  L+ +L  G + Y++  +++  +++    +++V
Sbjct: 788 ATPPAKRLSVKTFVRESDDNLIKEAI--LREIL-RGGQVYFLHNEVKSIDRRAQEIQALV 844

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + I I HG+M + + ESVM  F +    +L++TT+IE GIDV  A+ I+
Sbjct: 845 PE---------ARIGIGHGQMRERELESVMSDFYHKRFNILVSTTIIETGIDVPTANTIV 895

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
           IE A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  +   +D   GF 
Sbjct: 896 IERADKFGLAQLHQLRGRVGRSHHQAYAYLMTPNKKAMTNDALKRLEAIAEAQDLGAGFT 955

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG +QSG
Sbjct: 956 LASHDLEIRGAGELLGDEQSG 976


>gi|296125668|ref|YP_003632920.1| transcription-repair coupling factor [Brachyspira murdochii DSM
            12563]
 gi|296017484|gb|ADG70721.1| transcription-repair coupling factor [Brachyspira murdochii DSM
            12563]
          Length = 1244

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 137/401 (34%), Positives = 216/401 (53%), Gaps = 19/401 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T  Q  AI DI +DM     M R++ GDVG GKT VA  A+  A+ AG Q  I+ P 
Sbjct: 644  YEETADQLRAINDIKEDMESGKMMDRLVCGDVGFGKTEVAFRAVFKAIMAGKQCAILCPT 703

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             IL+QQHY   KK  ++  I +E++   +     ++  E + +G   +++GTH L  + I
Sbjct: 704  TILSQQHYNNAKKRFEDFPIRIEVLNRFVTSKQAKRNKELLKNGSCDLVVGTHMLLSNDI 763

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L L+++DE+ RFGV+ +  L +      VL ++ATPIPRTL +   G  DIS I  
Sbjct: 764  EFKNLGLIVIDEEQRFGVKHKEALKRLRLETDVLTLSATPIPRTLNMALTGIRDISIIET 823

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R P+KT +   +  + V+  ++  L    + +++  +I+          +E F  +
Sbjct: 824  PPLNRIPVKTFVTEFSE-EAVVNAIERELKRDGQVFYLYNRID---------TIESFALM 873

Query: 511  HEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
             +     + I + HGRM+    E +M+ F N    +L++TT+IE GID+ +A+ I+I+NA
Sbjct: 874  IKKLCPKARICVAHGRMTGHQLEKIMEDFINHKYDILVSTTIIENGIDIPNANTILIDNA 933

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
               GL++L+QLRGRVGR +  +   + Y     L++ +Y RL  +    D   GF IA  
Sbjct: 934  NRLGLSELYQLRGRVGRSDREAYAYMFYPSDLALTEVAYKRLEAISEHTDLGAGFKIAMR 993

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            DL+ R  G ILG +QSGM        EL+  +LE A  + K
Sbjct: 994  DLEIRGAGNILGKEQSGM--IYQVGYELYTQMLEEATNEYK 1032


>gi|207743032|ref|YP_002259424.1| transcription-repair coupling factor protein [Ralstonia
           solanacearum IPO1609]
 gi|206594429|emb|CAQ61356.1| transcription-repair coupling factor protein [Ralstonia
           solanacearum IPO1609]
          Length = 1147

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 147/415 (35%), Positives = 217/415 (52%), Gaps = 23/415 (5%)

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A ++  L  R+  ++    P+       +    +  F  T  Q +AI  ++ DM+    M
Sbjct: 570 AAELLNLYARRALRQGFAFPLTPNDY--EAFAESFGFDETPDQAAAITAVIADMTSGKPM 627

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QHY+ +     +  + +  
Sbjct: 628 DRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHYQTLADRFADWPVRIAE 687

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           I+    +     A+E I  G   I+IGTH L    +Q+ +L LVI+DE+HRFGV+Q+  L
Sbjct: 688 ISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVQFDRLGLVIIDEEHRFGVRQKEAL 747

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                   VL +TATPIPRTL +   G  D S I   P  R  IKT    + R ++ + R
Sbjct: 748 KTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTF---VRREEDSVLR 804

Query: 475 LKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
             ++  L  G + Y++  ++E  E K +    +V           + +A+ HG+M + + 
Sbjct: 805 EAILRELKRGGQVYFLHNEVETIENKRAKLEELVPE---------ARVAVAHGQMHEREL 855

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR    +
Sbjct: 856 ERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSHHQA 915

Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
              LL H    L+K +  RL  ++  E+   GF +A  DL+ R  GE+LG KQSG
Sbjct: 916 YAYLLVHDAEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSG 970


>gi|319654942|ref|ZP_08009016.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2]
 gi|317393367|gb|EFV74131.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2]
          Length = 1179

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/398 (34%), Positives = 222/398 (55%), Gaps = 21/398 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   + +G + ++     P+  T+ Q  +I +I +DM ++  M R+L GDVG GKT VA+
Sbjct: 602 GYAFSPDGDMQREFEAAFPYQETEDQIRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAI 661

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   A+  G Q  I+ P  ILAQQHYE +++  Q+  I + +++    +  + + L+ +
Sbjct: 662 RAAFKAIADGKQVAILVPTTILAQQHYETMRERFQDYPIEIGLLSRFRSKKQQTETLKGL 721

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G   +++GTH +    IQY +L L+I+DE+ RFGV  + K+ Q  T   VL +TATPI
Sbjct: 722 KAGTIDVVVGTHRILSKDIQYRELGLLIIDEEQRFGVTHKEKIKQLKTNVDVLTLTATPI 781

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489
           PRTL ++ LG  D+S I   P  R P++T ++  N   + E IER    L+   + Y++ 
Sbjct: 782 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGALVREAIER---ELARDGQVYFLY 838

Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            ++E  E+K      +V           + +   HG+M++ + ESVM SF  G   +L++
Sbjct: 839 NRVEDIERKAEEISMLVP---------DARVTYAHGKMTENELESVMLSFLEGESDVLVS 889

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605
           TT+IE G+D+ + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     L++ + 
Sbjct: 890 TTIIETGVDIPNVNTLIVHDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAE 949

Query: 606 TRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
            RL  +K  TE   GF IA  DL  R  G +LG +Q G
Sbjct: 950 KRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHG 987


>gi|311028986|ref|ZP_07707076.1| transcription-repair coupling factor [Bacillus sp. m3-13]
 gi|311032274|ref|ZP_07710364.1| transcription-repair coupling factor [Bacillus sp. m3-13]
          Length = 1178

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/399 (34%), Positives = 222/399 (55%), Gaps = 21/399 (5%)

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
           +G   + +G++ ++     P+  T+ Q  +I +I  DM +   M R+L GDVG GKT VA
Sbjct: 602 VGHAFSPDGEMQREFEATFPYQETEDQLRSIHEIKLDMEKTRPMDRLLCGDVGYGKTEVA 661

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           + A   A+  G Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ 
Sbjct: 662 IRAAFKAITDGKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRSRKQQTETMKG 721

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           + +G   I++GTH L    I+Y  L L+I+DE+ RFGV  + K+ Q      VL +TATP
Sbjct: 722 LGNGTVDIVVGTHRLLSKDIKYKDLGLLIIDEEQRFGVTHKEKIKQLKANIDVLTLTATP 781

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWI 488
           IPRTL ++ LG  D+S I   P  R P++T ++  N   + E IER    L+ G + Y++
Sbjct: 782 IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGNLVKEAIER---ELARGGQIYFL 838

Query: 489 CPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             ++E  E+K      +V           + +   HG+M++ + ESVM  F  G  ++L+
Sbjct: 839 YNRVEDIERKADEISMLVPE---------ARVTYAHGKMTENELESVMIQFLEGEAEVLV 889

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNS 604
           +TT+IE G+D+ + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     L++ +
Sbjct: 890 STTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVA 949

Query: 605 YTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
             RL  +K  TE   GF IA  DL  R  G +LG +Q G
Sbjct: 950 EKRLQSIKEFTELGSGFKIAMRDLSIRGAGNLLGAQQHG 988


>gi|331265444|ref|YP_004325074.1| transcription-repair coupling factor [Streptococcus oralis Uo5]
 gi|326682116|emb|CBY99732.1| transcription-repair coupling factor [Streptococcus oralis Uo5]
          Length = 1167

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 149/407 (36%), Positives = 230/407 (56%), Gaps = 27/407 (6%)

Query: 269  IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             P+  T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV    Q V++ 
Sbjct: 609  FPYVETDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLV 668

Query: 329  PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            P  +LAQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +   
Sbjct: 669  PTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQIDILIGTHRVLSK 728

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I
Sbjct: 729  DVVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVI 788

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSV 503
               P  R P++T ++  N  D VI     VL E   G + Y++  +++  ++K S  + +
Sbjct: 789  ETPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQVYYLYNKVDTIDRKVSELQEL 844

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +           +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ +
Sbjct: 845  IPE---------ASIGFVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTL 895

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGF 618
             IENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF
Sbjct: 896  FIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGF 955

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
             IA  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 956  KIAMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|126729844|ref|ZP_01745657.1| transcription-repair coupling factor [Sagittula stellata E-37]
 gi|126709963|gb|EBA09016.1| transcription-repair coupling factor [Sagittula stellata E-37]
          Length = 1159

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 146/399 (36%), Positives = 225/399 (56%), Gaps = 23/399 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+S T  Q +AI+D++ D+     M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 601 PYSETDDQLAAIEDVMDDLQSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVIAP 660

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+   +  +   + V  ++  +P     K  E IA G   I IGTHAL   +
Sbjct: 661 TTLLARQHYKSFAERFRGFPLEVAALSRFVPAKQAAKTREGIAKGTVDIAIGTHALLAKT 720

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ RFGVQ + +L Q  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 721 IRFQNLGLLIIDEEQRFGVQHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 780

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++ + P+I +  E      +E 
Sbjct: 781 TPPVDRLSIRTY---VSEFDPVTVR-EALLREHYRGGQSFIVVPKITDLPE------IEE 830

Query: 507 FNSLHEHFTSSIAII-HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L E       ++ HG+M+  D +  M++F +G   +L+ATT++E G+D+  A+ +I+
Sbjct: 831 F--LKEQVPECTYVVAHGQMAAGDLDERMNAFYDGKYDVLVATTIVESGLDIPTANTMIV 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLI 620
             A+ FGL+QL+Q+RGRVGR +  + C L   P   L+  +  RL VL   +    GF +
Sbjct: 889 HRADMFGLSQLYQIRGRVGRSKTRAYCYLTTKPRAKLTATAEKRLRVLGAIDMLGAGFSL 948

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           A +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 949 ASQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 985


>gi|172038623|ref|YP_001805124.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51142]
 gi|171700077|gb|ACB53058.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51142]
          Length = 1159

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/400 (34%), Positives = 225/400 (56%), Gaps = 18/400 (4%)

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  G    ++    Q++  + P+ PT  Q  AI+D+  D+     M R++ GDVG GKT 
Sbjct: 588 KNTGFTYPLDTPWQQELEDSFPYQPTPDQLKAIQDVKIDLESDRPMDRLVCGDVGFGKTE 647

Query: 309 VALIAMAAAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           VA+ A+  AV +G  Q   +AP  IL QQHY  +K+      I + ++      + +++ 
Sbjct: 648 VAVRAIFKAVTSGHKQVAFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTTSEKKEI 707

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           ++R+A G+  I++GT  L   S+++  L L++VDE+ RFGV Q+ K+ +  +   VL +T
Sbjct: 708 IQRLATGELDIVVGTQQLLGKSVKFKDLGLLVVDEEQRFGVNQKEKIKEIKSHVDVLTLT 767

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL ++  G  ++S IT  P  R+PIKT +   N  D V   ++  L  G + ++
Sbjct: 768 ATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSRYNP-DVVRTAIRNELDRGGQVFY 826

Query: 488 ICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           + P++E  E+  +  +++V          ++ +AI HG+M   + E  M SF NG   +L
Sbjct: 827 VVPRVEGIEEVAAQIKTMVP---------SARMAIAHGQMDVNELEITMLSFNNGDADIL 877

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKN 603
           + TT++E G+D+   + II+E+A+ FGLAQL+QLRGRVGR    +   LLY     L++ 
Sbjct: 878 VCTTIVESGLDIPRVNTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPSKAQLTET 937

Query: 604 SYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           +  RL  L+       G+ +A  D++ R  G +LG +QSG
Sbjct: 938 ARQRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSG 977


>gi|282915821|ref|ZP_06323589.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus D139]
 gi|282320312|gb|EFB50654.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus D139]
          Length = 1168

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/418 (35%), Positives = 226/418 (54%), Gaps = 23/418 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614  DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674  VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734  KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448  ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794  IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843  KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
            IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903  IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
             IA  DL  R  G +LG +Q G         +L+  +LE A  + + I   + D+  V
Sbjct: 962  KIAMRDLNIRGAGNLLGKQQHGFID--TVGFDLYSQMLEEAVNEKRGIKEPESDVPEV 1017


>gi|322388485|ref|ZP_08062088.1| transcription-repair coupling factor [Streptococcus infantis ATCC
            700779]
 gi|321140798|gb|EFX36300.1| transcription-repair coupling factor [Streptococcus infantis ATCC
            700779]
          Length = 1167

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 151/407 (37%), Positives = 229/407 (56%), Gaps = 27/407 (6%)

Query: 269  IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             P+  T+ Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q V++ 
Sbjct: 611  FPYVETEDQLRSIEEIKKDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNNHKQVVVLV 670

Query: 329  PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            P  +LAQQHY   K+  +   + V++++    +  + + LE++  GQ  I+IGTH +   
Sbjct: 671  PTTVLAQQHYSNFKERFEQFAVNVDVLSRFRSKKEQTETLEKLKKGQVDILIGTHRVLSK 730

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +++  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I
Sbjct: 731  DVEFSDLGLIIIDEEQRFGVKHKEALKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVI 790

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSV 503
               P  R P++T ++  N  D VI     VL E   G + Y++  +++  EKK S  + +
Sbjct: 791  ETPPTNRYPVQTYVLEQN--DRVIR--DAVLREIDRGGQVYYLYNKVDTIEKKVSELQEL 846

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +           +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ +
Sbjct: 847  IPE---------ASIGFVHGQMSEIRLENTLLDFIEGEYDILVTTTIIETGVDIPNANTL 897

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGF 618
             IENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   GF
Sbjct: 898  FIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKSLTEVSEKRLEAIKGFTELGSGF 957

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
             IA  DL  R  G +LG  QSG    +    EL+  LLE  IA+K+ 
Sbjct: 958  KIAMRDLSIRGAGNLLGSSQSGFIDSV--GFELYSQLLEEAIAKKNG 1002


>gi|313635134|gb|EFS01462.1| transcription-repair coupling factor [Listeria seeligeri FSL
           N1-067]
          Length = 746

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 144/430 (33%), Positives = 234/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T  Q 
Sbjct: 141 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSPDEEMQREFEDAFPYQETDDQL 198

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 199 RSIAEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 258

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ +  G   I++GTH L    ++Y+ L L+
Sbjct: 259 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKSGTVDIVVGTHRLLSKDVEYHDLGLL 318

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 319 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 378

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +   N   + E IER    L+   + Y++  ++E        ++ ++ + +      
Sbjct: 379 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------TITQKADEISAMVPD 427

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +AI HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+Q
Sbjct: 428 ARVAIAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ 487

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR   I+    +Y     L + +  RLS +K  TE   GF IA  DL  R  
Sbjct: 488 LYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGA 547

Query: 631 GEILGIKQSG 640
           G ILG +Q G
Sbjct: 548 GNILGAQQHG 557


>gi|315612154|ref|ZP_07887069.1| transcription-repair coupling factor [Streptococcus sanguinis ATCC
            49296]
 gi|315315715|gb|EFU63752.1| transcription-repair coupling factor [Streptococcus sanguinis ATCC
            49296]
          Length = 1167

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 149/406 (36%), Positives = 230/406 (56%), Gaps = 25/406 (6%)

Query: 269  IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             P+  T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV    Q V++ 
Sbjct: 609  FPYVETDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLV 668

Query: 329  PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            P  +LAQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +   
Sbjct: 669  PTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQVDILIGTHRVLSK 728

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I
Sbjct: 729  DVVFSDLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVI 788

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
               P  R P++T ++  N  D VI     VL E   G + Y++  +++        ++ +
Sbjct: 789  ETPPTNRYPVQTYVLEKN--DSVIR--DAVLREMERGGQIYYLYNKVD--------TIDQ 836

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            + + L E    +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + 
Sbjct: 837  KVSELQELIPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLF 896

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFL 619
            IENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF 
Sbjct: 897  IENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFK 956

Query: 620  IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            IA  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 957  IAMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|207724177|ref|YP_002254575.1| transcription-repair coupling factor protein [Ralstonia
           solanacearum MolK2]
 gi|206589387|emb|CAQ36349.1| transcription-repair coupling factor protein [Ralstonia
           solanacearum MolK2]
          Length = 1147

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 147/415 (35%), Positives = 217/415 (52%), Gaps = 23/415 (5%)

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A ++  L  R+  ++    P+       +    +  F  T  Q +AI  ++ DM+    M
Sbjct: 570 AAELLNLYARRALRQGFAFPLTPNDY--EAFAESFGFDETPDQAAAITAVIADMTSGKPM 627

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QHY+ +     +  + +  
Sbjct: 628 DRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHYQTLADRFADWPVRIAE 687

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           I+    +     A+E I  G   I+IGTH L    +Q+ +L LVI+DE+HRFGV+Q+  L
Sbjct: 688 ISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVQFDRLGLVIIDEEHRFGVRQKEAL 747

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                   VL +TATPIPRTL +   G  D S I   P  R  IKT    + R ++ + R
Sbjct: 748 KTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTF---VRREEDSVLR 804

Query: 475 LKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
             ++  L  G + Y++  ++E  E K +    +V           + +A+ HG+M + + 
Sbjct: 805 EAILRELKRGGQVYFLHNEVETIENKRAKLEELVPE---------ARVAVAHGQMHEREL 855

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR    +
Sbjct: 856 ERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSHHQA 915

Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
              LL H    L+K +  RL  ++  E+   GF +A  DL+ R  GE+LG KQSG
Sbjct: 916 YAYLLVHDAEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSG 970


>gi|187923864|ref|YP_001895506.1| transcription-repair coupling factor [Burkholderia phytofirmans PsJN]
 gi|187715058|gb|ACD16282.1| transcription-repair coupling factor [Burkholderia phytofirmans PsJN]
          Length = 1160

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 164/474 (34%), Positives = 241/474 (50%), Gaps = 21/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++  G    +E K   K   +  F  T  Q 
Sbjct: 554  QWEKAKRKAAQQIRDTAAELLNLYARRALRQ--GHAFALEPKDYVKFAESFGFEETPDQA 611

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 612  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 671

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+++I  G   I+IGTH L    +Q+ +L LV
Sbjct: 672  QTFSDRFSDWPVRIAELSRFKSTKEVSAAIQQINEGTVDIVIGTHKLLSSDVQFKRLGLV 731

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 732  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 791

Query: 459  KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            KT +      D VI E +   L  G + Y++  ++E  +  N R ++E          + 
Sbjct: 792  KTFVR--REEDSVIREAMLRELKRGGQVYFLHNEVETIE--NRRQMLEALVP-----EAR 842

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IA+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLH
Sbjct: 843  IAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRADKFGLAQLH 902

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR    +   LL H P  L+K +  RL  ++  E+   GF +A  DL+ R  GE
Sbjct: 903  QLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGE 962

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            +LG KQSG    +  Q  L+  +L  A K  K    ++PDLT+    +  I L+
Sbjct: 963  VLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKE--GKEPDLTAPLAATTEINLH 1012


>gi|229816037|ref|ZP_04446358.1| hypothetical protein COLINT_03090 [Collinsella intestinalis DSM
           13280]
 gi|229808351|gb|EEP44132.1| hypothetical protein COLINT_03090 [Collinsella intestinalis DSM
           13280]
          Length = 1192

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 206/378 (54%), Gaps = 13/378 (3%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T+ Q  AI DI  DM     M R+L GDVG GKT VAL A    V+ G Q +++
Sbjct: 629 SFPYDETRDQLDAIADIKSDMESTKPMDRLLCGDVGFGKTEVALRAAFKCVDGGRQVMVL 688

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE   +      + VE+++     A +R+AL   A G+  ++IGTH L  
Sbjct: 689 CPTTILAQQHYETFFERFAPFGVEVEVLSRFRTPAQQRRALAAFAEGKVDVLIGTHRLLS 748

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  ++L LVI+DE+ RFGVQ + +L        VL ++ATPIPRT+ +   G  D+S 
Sbjct: 749 ADVNPHELGLVIIDEEQRFGVQHKEQLKNMREQIDVLTLSATPIPRTMQMAMSGVRDMSL 808

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           IT  P GR+P+   +   +  D V   +++ +  G + Y++  +++          VER 
Sbjct: 809 ITTPPTGRRPVAVHVGEYDP-DVVSAAIRLEIGRGGQVYYVSNRVK-----TIDDAVERV 862

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L     + I + HG+MS  + E VM  F      +LIATT++E GID   A+ +IIE+
Sbjct: 863 --LEAAPEARIGVAHGKMSPREVEDVMVQFATKKIDVLIATTIVESGIDNSSANTLIIED 920

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
           ++  GLAQL+QL+GRVGR    +    ++    PL++ +  RL+ L   +D   G  IA 
Sbjct: 921 SQRLGLAQLYQLKGRVGRSATQAYAYFMFPGELPLTEEATARLTALSEFQDLGSGMRIAM 980

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G ++G +Q G
Sbjct: 981 RDLEIRGAGSLVGAEQHG 998


>gi|254670469|emb|CBA06145.1| transcription-repair coupling factor [Neisseria meningitidis
            alpha153]
          Length = 1286

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/428 (35%), Positives = 233/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 731  QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 790

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  +  LE +A G   I+IG
Sbjct: 791  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAVLEGMADGTVDIVIG 849

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 850  THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 909

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 910  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 963

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 964  NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 1021

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 1022 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 1081

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 1082 TLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1137

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1138 ITTEIKLH 1145


>gi|312623038|ref|YP_004024651.1| transcription-repair coupling factor [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203505|gb|ADQ46832.1| transcription-repair coupling factor [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 1141

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/429 (33%), Positives = 234/429 (54%), Gaps = 18/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++     EL+A  +  L  ++Q  K  G   + +    ++     P++ T+ Q 
Sbjct: 554 EWQKQKQKVRKSLELVAKDLVELYAKRQLGK--GFKFSKDTLWQKEFEEKFPYTETEGQL 611

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I +DM  +  M RIL GDVG GKT VA+ A   AV    Q  ++ P  ILAQQHY
Sbjct: 612 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 671

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                  ++  + +E+++    +  ++K ++ +  G   I+IGTH L    +++  L L+
Sbjct: 672 MTFSARMKDFPVTIEVLSRLKNETQQKKIIKGLKEGTIDIVIGTHRLLSSDVKFKDLGLL 731

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+H+FGV+ + K+ +  T   VL +TATPIPRTL +  LG  D+S I + P  R P+
Sbjct: 732 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRFPV 791

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++  N   I E I  LK + S G + +++  ++++ +E     V  +   L    + 
Sbjct: 792 QTFVLEYNERIIKEAI--LKEI-SRGGQVFYLYNRVKDIQE-----VAAKLQKLVGD-SV 842

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HG+MS+ + E V+  F  G   +L+ TT+IE G+D+ + + +I+E+++  GLAQL
Sbjct: 843 KIACAHGKMSEEELEEVLIDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLAQL 902

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QLRGRVGR   ++     +     LS+ +  RL+ +K   +   GF IA  DL+ R  G
Sbjct: 903 YQLRGRVGRSSRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGAGFKIAMRDLEIRGAG 962

Query: 632 EILGIKQSG 640
            +LG  Q G
Sbjct: 963 SLLGKLQHG 971


>gi|94971575|ref|YP_593623.1| transcription-repair coupling factor [Candidatus Koribacter
            versatilis Ellin345]
 gi|94553625|gb|ABF43549.1| transcription-repair coupling factor [Candidatus Koribacter
            versatilis Ellin345]
          Length = 1182

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 170/502 (33%), Positives = 264/502 (52%), Gaps = 31/502 (6%)

Query: 192  DLLQK-KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
            DL+QK +S   +  A N +   + AK       A + +A DELL     L   RK  K  
Sbjct: 560  DLIQKYRSSEGVKPALNRLGTQQWAKTKARVKKAMKDMA-DELLK----LYAARKTAK-- 612

Query: 251  IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             G   +  G+  ++      F+ T+ QE+AI+D+ QDM     M R+L GDVG GKT V+
Sbjct: 613  -GHAFSATGQFEREFDDAFEFNETEDQENAIRDVRQDMESDTPMDRLLCGDVGYGKTEVS 671

Query: 311  LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            + A   AV    Q  ++AP  +LA QH+E  K+      + VE+I+       +++ +ER
Sbjct: 672  MRAAFKAVSDNKQVAVLAPTTVLAFQHFETFKRRFSAFPVKVEMISRFRTAKQQKEIVER 731

Query: 371  IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
            + +GQ  I+IGTH +    I +  L LV++DE+ RFGV+ + +L Q      VL M+ATP
Sbjct: 732  VNNGQVDILIGTHRVLSKDIHFPDLGLVVIDEEQRFGVRHKERLKQLRKEVDVLTMSATP 791

Query: 431  IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWI 488
            IPRTL ++ LG  D+S I   P  R  I+TV+   +   I   IE+    L  G + Y++
Sbjct: 792  IPRTLHMSLLGLRDMSVIETPPKDRMAIQTVVAKWDEKLIKSAIEQ---ELDRGGQIYFV 848

Query: 489  CPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
              ++E        S+ E  + +HE    + I + HG+M +   E +M  F      +L+A
Sbjct: 849  HNRVE--------SIYEISDKIHELVPKAKILVGHGQMGEGQLEDIMLKFMRHDADILVA 900

Query: 548  TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605
            TT+IE G+D+   + +I+  A+  GL++L+QLRGRVGR    +   LL  P   L++ + 
Sbjct: 901  TTIIENGLDIPLCNTMIVNRADRHGLSELYQLRGRVGRSNRRAYAYLLVPPDRELTELAR 960

Query: 606  TRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
             RL+ LK   D   GF IA  DL+ R  G +LG +QSG  +      EL+ ++LE   ++
Sbjct: 961  RRLAALKEFSDLGAGFKIAALDLELRGAGNLLGGEQSG--QIEAVGFELYTTMLERTVRE 1018

Query: 663  AKHILTQDPDLTSVR-GQSIRI 683
             K  + ++   T +  G +IRI
Sbjct: 1019 MKGEVQEEQAETQLNLGLNIRI 1040


>gi|294496926|ref|YP_003560626.1| transcription-repair coupling factor [Bacillus megaterium QM B1551]
 gi|294346863|gb|ADE67192.1| transcription-repair coupling factor [Bacillus megaterium QM B1551]
          Length = 1176

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/398 (33%), Positives = 222/398 (55%), Gaps = 21/398 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   + +G + ++     P+  T+ Q  ++++I +DM  +  M R+L GDVG GKT VA+
Sbjct: 603 GYAFSPDGDLQREFETAFPYQETEDQLRSVQEIKKDMEHERPMDRLLCGDVGYGKTEVAI 662

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV  G Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  +++ ++ +
Sbjct: 663 RAAFKAVTDGKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRSRKQQQETIKGL 722

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +G   ++IGTH L    + Y  L L+++DE+ RFGV  + K+ Q      VL +TATPI
Sbjct: 723 KNGTVDVVIGTHRLLSKDVIYKDLGLLVIDEEQRFGVTHKEKIKQMKANVDVLTLTATPI 782

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWIC 489
           PRTL ++ LG  D+S I   P  R P++T ++  N   + E IER    L+   + Y++ 
Sbjct: 783 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPVLVREAIER---ELARDGQVYFLY 839

Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            ++E  E+K      +V           + +   HG+M++ + E+V+ SF  G   ++++
Sbjct: 840 NRVEDIERKAEEISMLVP---------DARVTYAHGKMNETELEAVILSFLEGEYDVIVS 890

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605
           TT+IE G+D+ + + +I+ NA+  GL+QL+QLRGRVGR   ++     YH    L++ + 
Sbjct: 891 TTIIETGVDIPNVNTLIVNNADKMGLSQLYQLRGRVGRSNRVAYAYFTYHKDKVLTEVAE 950

Query: 606 TRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
            RL  +K  TE   GF IA  DL  R  G +LG +Q G
Sbjct: 951 KRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAQQHG 988


>gi|307711221|ref|ZP_07647643.1| transcription-repair coupling factor [Streptococcus mitis SK321]
 gi|307617183|gb|EFN96361.1| transcription-repair coupling factor [Streptococcus mitis SK321]
          Length = 1167

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 153/431 (35%), Positives = 234/431 (54%), Gaps = 26/431 (6%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           I L   R Q K   G   + + +         P+  T  Q  ++++I +DM     M R+
Sbjct: 581 IKLYSERSQLK---GFAFSADDEDQHAFDDAFPYVETDDQLRSVEEIKRDMQASQPMDRL 637

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           L GDVG GKT VA+ A   AV    Q V++ P  +LAQQHY   K+  QN  + +++++ 
Sbjct: 638 LVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVLAQQHYTNFKERFQNFAVNIDVLSR 697

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
              +  + + LE++ +GQ  I+IGTH +    + +  L L+I+DE+ RFGV+ +  L + 
Sbjct: 698 FRSKKEQTETLEKLKNGQVDILIGTHRILSKDVVFADLGLMIIDEEQRFGVKHKETLKEL 757

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N  D VI     
Sbjct: 758 KKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKN--DNVIR--DA 813

Query: 478 VLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESV 533
           VL E   G + Y++  +++        ++ ++ + L E    +SI  +HG+MS+I  E+ 
Sbjct: 814 VLREMERGGQVYYLYNKVD--------TIDQKVSELQELIPEASIGYVHGQMSEIQLENT 865

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H GL+ L+QLRGRVGR   I+   
Sbjct: 866 LLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGLSTLYQLRGRVGRSNRIAYAY 925

Query: 594 LLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
           L+Y P   +S+ S  RL  +K  TE   GF IA  DL  R  G +LG  QSG    +   
Sbjct: 926 LMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNLLGKSQSGFIDSV--G 983

Query: 649 PELHDSLLEIA 659
            EL+  LLE A
Sbjct: 984 FELYSQLLEEA 994


>gi|15923493|ref|NP_371027.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926180|ref|NP_373713.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus N315]
 gi|156978831|ref|YP_001441090.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253315228|ref|ZP_04838441.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255005296|ref|ZP_05143897.2| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|282895111|ref|ZP_06303331.1| transcription-repair coupling factor [Staphylococcus aureus A8117]
 gi|81832560|sp|Q7A7B2|MFD_STAAN RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|81855990|sp|Q99WA0|MFD_STAAM RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|13700393|dbj|BAB41691.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus N315]
 gi|14246271|dbj|BAB56665.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|156720966|dbj|BAF77383.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|282762529|gb|EFC02669.1| transcription-repair coupling factor [Staphylococcus aureus A8117]
          Length = 1168

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|258429620|ref|ZP_05688294.1| transcription-repair-coupling factor [Staphylococcus aureus A9299]
 gi|257849679|gb|EEV73646.1| transcription-repair-coupling factor [Staphylococcus aureus A9299]
          Length = 1168

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|82750210|ref|YP_415951.1| transcription-repair coupling factor [Staphylococcus aureus RF122]
 gi|123768536|sp|Q2YVY2|MFD_STAAB RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|82655741|emb|CAI80140.1| transcription-repair coupling factor [Staphylococcus aureus RF122]
          Length = 1168

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|298693833|gb|ADI97055.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 1168

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|307729622|ref|YP_003906846.1| transcription-repair coupling factor [Burkholderia sp. CCGE1003]
 gi|307584157|gb|ADN57555.1| transcription-repair coupling factor [Burkholderia sp. CCGE1003]
          Length = 1161

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 158/442 (35%), Positives = 231/442 (52%), Gaps = 21/442 (4%)

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            G    +E K   K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL
Sbjct: 585  GHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVAL 644

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A   AV  G Q  +++P  +LA+QH +       +  + +  ++          A+++I
Sbjct: 645  RAAFIAVMGGKQVALLSPTTLLAEQHTQTFSDRFSDWPVRIAELSRFKSTKEVNAAIQQI 704

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
              G   I+IGTH L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPI
Sbjct: 705  NEGSVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPI 764

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWIC 489
            PRTL +   G  D S I   P  R  IKT    + R +E + R  ++  L  G + Y++ 
Sbjct: 765  PRTLGMALEGLRDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLH 821

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             ++E  +  N R ++E          + IA+ HG+M + + E VM  F      +L+ TT
Sbjct: 822  NEVETIE--NRRQMLEALVP-----EARIAVAHGQMHERELERVMRDFVAQRANVLLCTT 874

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
            +IE GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  R
Sbjct: 875  IIETGIDVPSANTILIHRADKFGLAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRR 934

Query: 608  LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            L  ++  E+   GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K
Sbjct: 935  LEAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALK 992

Query: 665  HILTQDPDLTSVRGQSIRILLY 686
                ++PDLT+    +  I L+
Sbjct: 993  D--GKEPDLTAPLAATTEINLH 1012


>gi|283469795|emb|CAQ49006.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 1168

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|87302159|ref|ZP_01084984.1| transcription-repair coupling factor [Synechococcus sp. WH 5701]
 gi|87283084|gb|EAQ75040.1| transcription-repair coupling factor [Synechococcus sp. WH 5701]
          Length = 1187

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/425 (32%), Positives = 230/425 (54%), Gaps = 20/425 (4%)

Query: 248  KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
            ++  G P   +G    ++  + P+ PT  Q  AI ++ +DM +   M R++ GDVG GKT
Sbjct: 592  QQAAGFPFPADGPWQGELEDSFPYEPTPDQVKAIAEVKRDMEKPEPMDRLVCGDVGFGKT 651

Query: 308  LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             VA+ A+  AV AG Q  ++AP  +LAQQH+  + +      + V ++      A R+  
Sbjct: 652  EVAIRAVFKAVTAGKQCALLAPTTVLAQQHWRTLSERFAPYPLKVALLNRFRTTAERKTI 711

Query: 368  LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            L+ +  G   +++GTH L      + KL L++VDE+ RFGV Q+ K+        VL ++
Sbjct: 712  LDGLRDGTVDVVVGTHQLLSKGTSFEKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLS 771

Query: 428  ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            ATPIPRTL ++  G  ++S IT  P  R+PIKT +  ++  + V   ++  L  G + ++
Sbjct: 772  ATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDE-EAVRSAIRQELDRGGQVFY 830

Query: 488  ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            + P++E         + E    L E      + + HG+M + + ES M +F  G   +++
Sbjct: 831  VVPRVE--------GIEEVAGQLREMLPGLKLLVAHGQMGEGELESAMVAFNAGEADVML 882

Query: 547  ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKN 603
             TT+IE G+D+   + I++E+A  FGLAQL+QLRGRVGR   + +   L++P    LS+ 
Sbjct: 883  CTTIIESGLDIPRVNTILVEDAHKFGLAQLYQLRGRVGR-SGVQAHAWLFYPGDASLSEA 941

Query: 604  SYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLE 657
            +  RL  ++       G+ +A  D++ R  G +LG++QSG  +   F +    L +SL E
Sbjct: 942  ARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAE 1001

Query: 658  IARKD 662
            I  +D
Sbjct: 1002 IQGQD 1006


>gi|295702293|ref|YP_003595368.1| transcription-repair coupling factor [Bacillus megaterium DSM 319]
 gi|294799952|gb|ADF37018.1| transcription-repair coupling factor [Bacillus megaterium DSM 319]
          Length = 1176

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 135/398 (33%), Positives = 222/398 (55%), Gaps = 21/398 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   + +G + ++     P+  T+ Q  ++++I +DM  +  M R+L GDVG GKT VA+
Sbjct: 603 GYAFSPDGDLQREFETAFPYQETEDQLRSVQEIKKDMEHERPMDRLLCGDVGYGKTEVAI 662

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV  G Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  +++ ++ +
Sbjct: 663 RAAFKAVTDGKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRSRKQQQETIKGL 722

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +G   ++IGTH L    + Y  L L+++DE+ RFGV  + K+ Q      VL +TATPI
Sbjct: 723 KNGTVDVVIGTHRLLSKDVIYKDLGLLVIDEEQRFGVTHKEKIKQMKANVDVLTLTATPI 782

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWIC 489
           PRTL ++ LG  D+S I   P  R P++T ++  N   + E IER    L+   + Y++ 
Sbjct: 783 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPVLVREAIER---ELARDGQVYFLY 839

Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            ++E  E+K      +V           + +   HG+M++ + E+V+ SF  G   ++++
Sbjct: 840 NRVEDIERKAEEISMLVP---------DARVTYAHGKMNETELEAVILSFLEGEYDVIVS 890

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605
           TT+IE G+D+ + + +I+ NA+  GL+QL+QLRGRVGR   ++     YH    L++ + 
Sbjct: 891 TTIIETGVDIPNVNTLIVNNADKMGLSQLYQLRGRVGRSNRVAYAYFTYHKDKVLTEVAE 950

Query: 606 TRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
            RL  +K  TE   GF IA  DL  R  G +LG +Q G
Sbjct: 951 KRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAQQHG 988


>gi|83745897|ref|ZP_00942954.1| Transcription-repair coupling factor [Ralstonia solanacearum UW551]
 gi|83727587|gb|EAP74708.1| Transcription-repair coupling factor [Ralstonia solanacearum UW551]
          Length = 1206

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 147/415 (35%), Positives = 217/415 (52%), Gaps = 23/415 (5%)

Query: 235  AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
            A ++  L  R+  ++    P+       +    +  F  T  Q +AI  ++ DM+    M
Sbjct: 629  AAELLNLYARRALRQGFAFPLTPNDY--EAFAESFGFDETPDQAAAITAVIADMTSGKPM 686

Query: 295  LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
             R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QHY+ +     +  + +  
Sbjct: 687  DRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHYQTLADRFADWPVRIAE 746

Query: 355  ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
            I+    +     A+E I  G   I+IGTH L    +Q+ +L LVI+DE+HRFGV+Q+  L
Sbjct: 747  ISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVQFDRLGLVIIDEEHRFGVRQKEAL 806

Query: 415  TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                    VL +TATPIPRTL +   G  D S I   P  R  IKT    + R ++ + R
Sbjct: 807  KTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTF---VRREEDSVLR 863

Query: 475  LKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
              ++  L  G + Y++  ++E  E K +    +V           + +A+ HG+M + + 
Sbjct: 864  EAILRELKRGGQVYFLHNEVETIENKRAKLEELVPE---------ARVAVAHGQMHEREL 914

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR    +
Sbjct: 915  ERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSHHQA 974

Query: 591  SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
               LL H    L+K +  RL  ++  E+   GF +A  DL+ R  GE+LG KQSG
Sbjct: 975  YAYLLVHDAEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSG 1029


>gi|302332216|gb|ADL22409.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 1168

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|258424461|ref|ZP_05687340.1| transcription-repair coupling factor [Staphylococcus aureus A9635]
 gi|257845330|gb|EEV69365.1| transcription-repair coupling factor [Staphylococcus aureus A9635]
          Length = 1168

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|254480585|ref|ZP_05093832.1| transcription-repair coupling factor [marine gamma proteobacterium
           HTCC2148]
 gi|214039168|gb|EEB79828.1| transcription-repair coupling factor [marine gamma proteobacterium
           HTCC2148]
          Length = 1154

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 145/429 (33%), Positives = 226/429 (52%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R+       +A Q+  +  R++ +   G    ++     +     PF  T  QE
Sbjct: 552 QWDKARRKASEKANDIAAQLLEVYARREAR--TGYAFTLDQDKYSQFSAAFPFEETPDQE 609

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             I+ +++DM     M R++ GDVG GKT VA+ A   A +   Q  ++ P  +LAQQH+
Sbjct: 610 LTIRAVVEDMCSPRVMDRLVCGDVGFGKTEVAMRAAFIASQNKKQVAVLVPTTLLAQQHF 669

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                   +  + VE+++     A  +   +RIA G+  I++GTH L Q   ++  L L+
Sbjct: 670 SSFCDRFADWPVNVEVVSRFKSAAQVKDVSKRIADGKIDILVGTHKLLQSDFRFNDLGLL 729

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+Q+  +    +   +L +TATPIPRTL +   G  D+S I   PA R  I
Sbjct: 730 IIDEEHRFGVKQKEAIKALRSEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSI 789

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--NFRSVVERFNSLHEHFTS 516
           KT +   N I  V E +      G + Y++  +++  +ES    R +V   N        
Sbjct: 790 KTFVREHN-IALVKEAVLRETLRGGQVYYLHNEVKSIEESARKLRELVPDLN-------- 840

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            + + HG+M + + E VM SF +    +L+ TT+IE GID+ +A+ IIIE A+ FGLAQL
Sbjct: 841 -VGVAHGQMRETELEHVMSSFYHQHNHILMCTTIIETGIDIPNANTIIIERADRFGLAQL 899

Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           HQLRGRVGR    +   LL  P   ++ ++  RL  ++   D   G+L+A  DL+ R  G
Sbjct: 900 HQLRGRVGRSHHQAYAYLLTPPRSAITADAGKRLEAIEAAGDLGAGYLLATHDLEIRGAG 959

Query: 632 EILGIKQSG 640
           E+LG +QSG
Sbjct: 960 ELLGDEQSG 968


>gi|255065241|ref|ZP_05317096.1| transcription-repair coupling factor [Neisseria sicca ATCC 29256]
 gi|255050662|gb|EET46126.1| transcription-repair coupling factor [Neisseria sicca ATCC 29256]
          Length = 1158

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 150/428 (35%), Positives = 233/428 (54%), Gaps = 17/428 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 603  QAFADGFGYEETEDQAAAIVAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 662

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +L +QH + F  ++      +  +   N  +A  + ALE +A G   I+IG
Sbjct: 663  QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKAALEGMADGTVDIVIG 721

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L QD I++  L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 722  THKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 781

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 782  LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 835

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            ++ ER  +L     + I + H ++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 836  NMRERLETLLPE--ARIGVAHRQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 893

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
             III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 894  TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 953

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 954  TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 1009

Query: 679  QSIRILLY 686
             +  I L+
Sbjct: 1010 ITTEIKLH 1017


>gi|253730971|ref|ZP_04865136.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253725283|gb|EES94012.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 1168

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|49482730|ref|YP_039954.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|295427037|ref|ZP_06819674.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|81828081|sp|Q6GJG8|MFD_STAAR RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|49240859|emb|CAG39526.1| putative transcription-repair coupling factor [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|295129040|gb|EFG58669.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 1168

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|57650044|ref|YP_185435.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus COL]
 gi|151220678|ref|YP_001331500.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|81859647|sp|Q5HIH2|MFD_STAAC RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|57284230|gb|AAW36324.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus COL]
 gi|150373478|dbj|BAF66738.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus str. Newman]
          Length = 1168

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|319787478|ref|YP_004146953.1| transcription-repair coupling factor [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465990|gb|ADV27722.1| transcription-repair coupling factor [Pseudoxanthomonas suwonensis
           11-1]
          Length = 1166

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/432 (33%), Positives = 233/432 (53%), Gaps = 24/432 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +WT   R+       +A ++  +  R+Q +   G+ ++++  + +      PF  T  Q 
Sbjct: 568 QWTKAKRKAQEKVRDVAAELLEIQARRQARA--GLALDIDRAMYEGFAAGFPFEETPDQH 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI+ +L+D+     M R++ GDVG GKT VA+ A  AA   G Q  ++ P  +LA+QH+
Sbjct: 626 AAIEAVLRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASGGRQVAVLVPTTLLAEQHF 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              +    +  + VE+++    +      LE++A G+  +I+GTH L Q  +++  L LV
Sbjct: 686 RNFRDRFADWPLKVEVLSRFKSKKEIEAELEKVARGEIDVIVGTHRLLQPDVKFKDLGLV 745

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S I   P  R  +
Sbjct: 746 IVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPPNRLAV 805

Query: 459 KTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHF 514
           +T ++P   N++ E  +R    LS G + Y++   +E   + +     +V          
Sbjct: 806 QTFVVPWDDNQLREAFQR---ELSRGGQLYFLHNDVESMGRMQKQLAELVP--------- 853

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I + HG+M + + E VM  F+     +L+A+T+IE GID+ +A+ I+I  A+ FGLA
Sbjct: 854 EARIGVAHGQMPERELERVMLDFQKQRFNVLLASTIIESGIDIPNANTIVINRADKFGLA 913

Query: 575 QLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           QLHQLRGRVGR    +   LL  P    +S ++  RL  + + ++   GF +A  DL+ R
Sbjct: 914 QLHQLRGRVGRSHHRAYAYLLVPPDRRAMSPDAEKRLDAIASMDELGAGFTLATHDLEIR 973

Query: 629 KEGEILGIKQSG 640
             GE+LG  QSG
Sbjct: 974 GAGELLGEDQSG 985


>gi|21282187|ref|NP_645275.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49485367|ref|YP_042588.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|297207394|ref|ZP_06923833.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300910353|ref|ZP_07127806.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|81827911|sp|Q6GBY5|MFD_STAAS RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|81847858|sp|Q8NXZ6|MFD_STAAW RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|21203623|dbj|BAB94323.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49243810|emb|CAG42235.1| putative transcription-repair coupling factor [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|296887957|gb|EFH26851.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300888342|gb|EFK83529.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 1168

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|313680042|ref|YP_004057781.1| transcription factor card [Oceanithermus profundus DSM 14977]
 gi|313152757|gb|ADR36608.1| transcription factor CarD [Oceanithermus profundus DSM 14977]
          Length = 986

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 151/429 (35%), Positives = 236/429 (55%), Gaps = 21/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W        A  E LA ++ +L  R+Q       P   +      I    P + T+ Q 
Sbjct: 401 DWQRAKARAQADAEALAQRLLVLYARRQQTPGTAYPALPDWD--PLIEAGFPHTLTEDQA 458

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A++D+L+D+   + M R++ GDVG GKT +AL A    V  G Q   +AP  +LA+QHY
Sbjct: 459 RALEDVLRDLETPHPMDRLVSGDVGFGKTEIALRAAHRVVGHGRQVAYLAPTTLLAEQHY 518

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +   +  + V +++   P+A  R+  E +A G+  ++IGTH L  D +++ +L L+
Sbjct: 519 NTFAERFADLPVEVALLSRFTPEAEARRVEEGLAEGRIDVVIGTHRLLSDRVRFRQLGLL 578

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+HRFGV Q+ ++ + A    VL ++ATPIPRTL    +G  D+S I   P GRKPI
Sbjct: 579 IVDEEHRFGVAQKERIKEMAEGLDVLSLSATPIPRTLYQALVGLKDVSSIQTPPPGRKPI 638

Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +TV+ P    D  + R  V+  +  G KA+++  +I   E +      +V          
Sbjct: 639 QTVVAP---FDPALVREAVLFEMERGGKAFYVHDRIASIEARARYLEVLVP--------- 686

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I ++HGRM+D + E VM  F  G   LL+ATT++E G+D+ +A+ I+IE A+  GLA
Sbjct: 687 EARIGVVHGRMADREIEEVMRHFARGAFDLLVATTIVESGLDIPEANTILIERADRLGLA 746

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            L+QLRGRVGR E  +   L + P L++ +  RL+ L +  D   G  +AE+D++ R  G
Sbjct: 747 SLYQLRGRVGRREREAYAYLFHPPRLTEAAERRLAALADLTDLGSGHRLAEKDMEIRGVG 806

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 807 NLLGPQQHG 815


>gi|116490296|ref|YP_809840.1| transcription-repair coupling factor [Oenococcus oeni PSU-1]
 gi|116091021|gb|ABJ56175.1| transcription-repair coupling factor [Oenococcus oeni PSU-1]
          Length = 1188

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/434 (32%), Positives = 236/434 (54%), Gaps = 26/434 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R   A  E +A ++  L  +++   E+G   +V+ +  Q+      +  T  Q 
Sbjct: 583  DWAKTKRRVTAKVEDIADELIALYSKRE--GEVGYAFSVDDQRQQEFDDGFAYPETVDQL 640

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +IK+I  DM  K  M R+L GDVG GKT VA  A   A+E   Q   + P  IL+QQHY
Sbjct: 641  RSIKEIKSDMENKKPMDRLLVGDVGFGKTEVAFRAAFKAIEDHKQVAFLTPTTILSQQHY 700

Query: 339  EF-IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            +  I++++   +I + +++        ++ ++++   Q  ++IGTH L    + +  L L
Sbjct: 701  QTAIERFSDFPEIKIAMLSRFNTAGQNKEVIKKLKAHQLDMVIGTHRLLSKDVAFDDLGL 760

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +I+DE+ RFGV+ + K+ Q      VL +TATPIPRTL +  +G  D+S +   PA R P
Sbjct: 761  LIIDEEQRFGVKHKEKIKQLRANVDVLTLTATPIPRTLNMALVGARDLSVLETPPANRFP 820

Query: 458  IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEH 513
            I+T ++  N   I + IE+    LS G + +++  +++  E+     + +V   N     
Sbjct: 821  IQTYVLEENWPVIADAIEK---ELSRGGQTFFLHNRVQDIERTVGEIQRIVPDAN----- 872

Query: 514  FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +  IHGRM++   E V+  F NG   +L+ TT+IE G+D+ +A+ +I+EN+E FGL
Sbjct: 873  ----VGYIHGRMNETQLEDVLMDFLNGIYDVLVTTTIIETGVDIPNANTLIVENSERFGL 928

Query: 574  AQLHQLRGRVGRGEEISSCILLY---HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQ 627
            +QL+QLRGR+GR   ++     Y     P ++++  RL  +++ TE   GF +A  DL  
Sbjct: 929  SQLYQLRGRIGRSNRLAYAYFTYPGDRQP-TEDAQKRLEAIRDFTELGSGFKLAMRDLSI 987

Query: 628  RKEGEILGIKQSGM 641
            R  G++LG +Q G 
Sbjct: 988  RGAGDLLGKQQHGF 1001


>gi|328463460|gb|EGF35111.1| transcription-repair coupling factor [Lactobacillus helveticus MTCC
           5463]
          Length = 1055

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 237/430 (55%), Gaps = 19/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +K  G   + +  + ++     P++ T  Q 
Sbjct: 563 EWAKIKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFEDAFPYAETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R++ GDVG GKT VAL A   A++   Q   +AP  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAIQDNKQVAFLAPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++     A  ++ +E +  G+  +++GTH L    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLKEGKIDLVVGTHRLLSKDVEFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +  + +I  V+    L+ +  +G + +++  +I     S+    VE+   L  +  +
Sbjct: 801 QTYV--MEQIPSVVRDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQQLIPN--A 850

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL
Sbjct: 851 RIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDIPNVNTMIIEDADHYGLSQL 910

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF IA  DL  R  G
Sbjct: 911 YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970

Query: 632 EILGIKQSGM 641
            +LG +Q G 
Sbjct: 971 NMLGAQQHGF 980


>gi|260102336|ref|ZP_05752573.1| transcription-repair coupling factor [Lactobacillus helveticus DSM
           20075]
 gi|260083845|gb|EEW67965.1| transcription-repair coupling factor [Lactobacillus helveticus DSM
           20075]
          Length = 1165

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 237/430 (55%), Gaps = 19/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +K  G   + +  + ++     P++ T  Q 
Sbjct: 563 EWAKIKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFEDAFPYAETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R++ GDVG GKT VAL A   A++   Q   +AP  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAIQDNKQVAFLAPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++     A  ++ +E +  G+  +++GTH L    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLKEGKIDLVVGTHRLLSKDVEFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +  + +I  V+    L+ +  +G + +++  +I     S+    VE+   L  +  +
Sbjct: 801 QTYV--MEQIPSVVRDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQQLIPN--A 850

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL
Sbjct: 851 RIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDIPNVNTMIIEDADHYGLSQL 910

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF IA  DL  R  G
Sbjct: 911 YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970

Query: 632 EILGIKQSGM 641
            +LG +Q G 
Sbjct: 971 NMLGAQQHGF 980


>gi|257424615|ref|ZP_05601043.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257427281|ref|ZP_05603682.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257429918|ref|ZP_05606304.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257435524|ref|ZP_05611574.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M876]
 gi|282903089|ref|ZP_06310981.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus C160]
 gi|282904878|ref|ZP_06312738.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282907825|ref|ZP_06315663.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910141|ref|ZP_06317947.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282913331|ref|ZP_06321122.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918284|ref|ZP_06326024.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus C427]
 gi|282923035|ref|ZP_06330721.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus C101]
 gi|283957293|ref|ZP_06374751.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293500380|ref|ZP_06666232.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509318|ref|ZP_06668034.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M809]
 gi|293515907|ref|ZP_06670597.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297591586|ref|ZP_06950223.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MN8]
 gi|257272642|gb|EEV04762.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275932|gb|EEV07400.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257279434|gb|EEV10029.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257285161|gb|EEV15278.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M876]
 gi|282314554|gb|EFB44941.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317850|gb|EFB48219.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322802|gb|EFB53122.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325989|gb|EFB56295.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282328301|gb|EFB58576.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331995|gb|EFB61504.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282596515|gb|EFC01475.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus C160]
 gi|283791217|gb|EFC30027.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290921315|gb|EFD98373.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096340|gb|EFE26600.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467863|gb|EFF10373.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M809]
 gi|297575455|gb|EFH94172.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312436407|gb|ADQ75478.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus TCH60]
          Length = 1168

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|87160796|ref|YP_493190.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194263|ref|YP_499055.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|161508743|ref|YP_001574402.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253735238|ref|ZP_04869403.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|258452816|ref|ZP_05700811.1| transcription-repair coupling factor [Staphylococcus aureus A5948]
 gi|262049988|ref|ZP_06022847.1| transcription-repair coupling factor [Staphylococcus aureus D30]
 gi|282925578|ref|ZP_06333231.1| transcription-repair coupling factor [Staphylococcus aureus A9765]
 gi|284023512|ref|ZP_06377910.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 132]
 gi|294850363|ref|ZP_06791096.1| transcription-repair coupling factor [Staphylococcus aureus A9754]
 gi|123098062|sp|Q2G0R8|MFD_STAA8 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|123722412|sp|Q2FJD8|MFD_STAA3 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|87126770|gb|ABD21284.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87201821|gb|ABD29631.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|160367552|gb|ABX28523.1| transcription-repair coupling factor helicase [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253726798|gb|EES95527.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257859502|gb|EEV82355.1| transcription-repair coupling factor [Staphylococcus aureus A5948]
 gi|259161923|gb|EEW46506.1| transcription-repair coupling factor [Staphylococcus aureus D30]
 gi|282592482|gb|EFB97494.1| transcription-repair coupling factor [Staphylococcus aureus A9765]
 gi|294822787|gb|EFG39223.1| transcription-repair coupling factor [Staphylococcus aureus A9754]
 gi|315196186|gb|EFU26542.1| transcription-repair coupling factor helicase [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320139410|gb|EFW31288.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144187|gb|EFW35955.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329729764|gb|EGG66161.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 1168

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|323438735|gb|EGA96475.1| transcription-repair coupling factor [Staphylococcus aureus O11]
 gi|323442053|gb|EGA99688.1| transcription-repair coupling factor [Staphylococcus aureus O46]
          Length = 1168

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|269202123|ref|YP_003281392.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ED98]
 gi|296276156|ref|ZP_06858663.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MR1]
 gi|262074413|gb|ACY10386.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ED98]
          Length = 1168

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|213965538|ref|ZP_03393733.1| transcription-repair coupling factor [Corynebacterium amycolatum
            SK46]
 gi|213951922|gb|EEB63309.1| transcription-repair coupling factor [Corynebacterium amycolatum
            SK46]
          Length = 1215

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/385 (35%), Positives = 210/385 (54%), Gaps = 17/385 (4%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q++  N PF+ T+ Q  AI +I  DM +   M R+L GDVG GKT VAL A   AV+ G 
Sbjct: 641  QEMEDNFPFTETEDQLQAIDEIKSDMEKPVPMDRVLIGDVGYGKTEVALRAAFKAVQDGR 700

Query: 323  QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            Q  ++ P  +LAQQH     +  +   + +  ++        R+ LE + +G   I+IGT
Sbjct: 701  QVAVLVPTTLLAQQHLTTFTQRMEGFPVTIRGLSRFTSPKDSREVLEGLKNGTVDIVIGT 760

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L Q  +Q+ +L LVIVDE+ RFGV+ +  +        VL M+ATPIPRTL ++  G 
Sbjct: 761  HRLLQTGVQWKELGLVIVDEEQRFGVEHKEHIKALRHHVDVLTMSATPIPRTLEMSIAGI 820

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNF 500
             ++S+I   P  R P+ T  +      +V   ++  L    + +++  ++E  +K   N 
Sbjct: 821  REMSQILTPPQDRHPVLT-YVGAQSDKQVAAAIRRELLRDGQVFYLHNKVETIDKVAQNI 879

Query: 501  RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            R++V           + + + HG+M +   E  +D F      +L+ TT++E G+D+ +A
Sbjct: 880  RNLVPE---------ARVVVAHGQMGEEQLERTVDGFWQREYDVLVCTTIVETGLDIANA 930

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED-- 616
            + +I+ENA H GL+QLHQLRGRVGR  E +    LY  +  L++ SY RLS +    D  
Sbjct: 931  NTLIVENAHHMGLSQLHQLRGRVGRSRERAYAYFLYPENQTLTETSYDRLSTIAQNNDLG 990

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSG 640
             G  +A +DL+ R  G ILG +QSG
Sbjct: 991  AGMAVAMKDLEMRGAGNILGAEQSG 1015


>gi|71066039|ref|YP_264766.1| transcription-repair coupling factor [Psychrobacter arcticus 273-4]
 gi|71039024|gb|AAZ19332.1| transcription-repair coupling factor [Psychrobacter arcticus 273-4]
          Length = 1243

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 154/445 (34%), Positives = 234/445 (52%), Gaps = 25/445 (5%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL M+ + + ++GI   ++    +       F  T  Q +AI  +++DM Q   M R++ 
Sbjct: 658  LLNMQARREAKVGIHFKIDPSQYELFASQFAFEETPDQANAIHAVMEDMRQNQPMDRLIC 717

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV AG Q  ++ P  +LA QH +  +    +  + +E ++   
Sbjct: 718  GDVGFGKTEVAMRAAFIAVSAGYQVAVLVPTTLLAGQHEDNFRNRFADWPVRIETLSRFG 777

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             + H+   L  +A G+  I+IGTH L Q  +++  L L+IVDE+HRFGV+ + ++    T
Sbjct: 778  GKKHQDTVLTDLAAGKVDIVIGTHKLLQPDVKFSNLGLMIVDEEHRFGVRHKERIKAIQT 837

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKV 477
                + MTATPIPRTL +   G  D+S I   PA R  IKT ++      + E I R   
Sbjct: 838  DVDSMSMTATPIPRTLNMALSGMRDMSIIATPPARRLAIKTFVMQKTEALMKEAILR--- 894

Query: 478  VLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             L  G + Y +   +   E+     R +V           + + + HG+M +   E VM 
Sbjct: 895  ELLRGGQVYLLHNDVASIERMAETIRELVPE---------ARVGVAHGQMQERQLEQVMQ 945

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             + +    +LI +T+IE GIDV +A+ IIIE A+ FGLAQLHQLRGRVGR    + C LL
Sbjct: 946  QYYHKKFNVLICSTIIETGIDVPNANTIIIERADKFGLAQLHQLRGRVGRSHHQAYCYLL 1005

Query: 596  YHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
                  L  ++  RL  ++       GF++A EDL+ R  GEILG +QSG  + +     
Sbjct: 1006 VPSIKGLKGDAKRRLHAIERANTLGAGFMLASEDLEIRGAGEILGKQQSGNMQAIGF--S 1063

Query: 651  LHDSLLEIARKDAKHILTQDPDLTS 675
            L+  +LE A K  K    ++PDL++
Sbjct: 1064 LYMDMLERATKAIK--AGKEPDLST 1086


>gi|257432620|ref|ZP_05608982.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257282485|gb|EEV12618.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
           aureus E1410]
          Length = 1168

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   + +++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPENKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|296123961|ref|YP_003631739.1| transcription-repair coupling factor [Planctomyces limnophilus DSM
           3776]
 gi|296016301|gb|ADG69540.1| transcription-repair coupling factor [Planctomyces limnophilus DSM
           3776]
          Length = 1103

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 146/431 (33%), Positives = 233/431 (54%), Gaps = 21/431 (4%)

Query: 238 IALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           +A  ++R Q ++E+  GI    +    ++   + P+  T  Q  AI DI +DM +   M 
Sbjct: 516 MAADMLRLQAERELQPGIAFPPDSHWMEEFEASFPYIETIDQSKAILDIKRDMERPRPME 575

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LA+QHY           I +  +
Sbjct: 576 RLICGDVGFGKTEVAMRAAFKAVDGGKQVAVLVPTTVLAEQHYRSFSSRFAEFPINIGQL 635

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +    +  ++  L  +  G   ++IGTH L Q  + +  L L+I+DE+ RFGV+ + +L 
Sbjct: 636 SRFRTKTEQKLTLSGLMDGSVDLVIGTHRLVQSDVHFKDLGLLIIDEEQRFGVEAKERLK 695

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +  T   +L ++ATPIPRTL L+ +G  DIS +   P  R  I+T I    R D  + R 
Sbjct: 696 KLRTQTDILTLSATPIPRTLHLSLIGVRDISNLETPPQDRMAIETRIC---RFDPTLIRQ 752

Query: 476 KVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            +V  L+ G + Y++  ++      N +++ ER  S+     + + ++HG+M++ + E  
Sbjct: 753 AIVRELNRGGQIYFVHNRV-----YNIQTMAERIRSIVPE--AQVGVVHGQMNEHEMEEA 805

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F  G   +L+ATT+IE G+D+ +A+ I I  AEH+GLA++HQLRGRVGR +  + C 
Sbjct: 806 MLGFVRGDLDVLVATTIIESGLDIPNANTIFINQAEHYGLAEMHQLRGRVGRYKHRAYCY 865

Query: 594 LLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
           L+      LS  +  RL  ++   +   GF I+  DL+ R  G ILG +QSG     I  
Sbjct: 866 LMVEEGKILSPQATKRLKAIEEFSELGAGFKISMRDLEIRGAGNILGTEQSG--HIAIVG 923

Query: 649 PELHDSLLEIA 659
            EL+  LLE A
Sbjct: 924 YELYCQLLENA 934


>gi|254493915|ref|ZP_05107086.1| LOW QUALITY PROTEIN: transcription-repair coupling factor
           [Neisseria gonorrhoeae 1291]
 gi|226512955|gb|EEH62300.1| LOW QUALITY PROTEIN: transcription-repair coupling factor
           [Neisseria gonorrhoeae 1291]
          Length = 739

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 149/428 (34%), Positives = 233/428 (54%), Gaps = 17/428 (3%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q       +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G 
Sbjct: 182 QAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 241

Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q  ++AP  +L +QH + F  ++      +  +   N  +A  +  LE +A G   I+IG
Sbjct: 242 QVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKA-TKATLEGMADGTVDIVIG 300

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH L QD I++  L L+I+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G
Sbjct: 301 THKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEG 360

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D S IT  P+ R  +KT + P +    V E +   L  G + +++  +++        
Sbjct: 361 LRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIE 414

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           ++ ER  +L     + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+
Sbjct: 415 NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNAN 472

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GF 618
            III  A+ FGLAQLHQLRGRVGR    +   LL    ++K++  RL  +   ++   GF
Sbjct: 473 TIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGF 532

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            +A +DL+ R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G
Sbjct: 533 TLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLG 588

Query: 679 QSIRILLY 686
            +  I L+
Sbjct: 589 ITTEIKLH 596


>gi|254252138|ref|ZP_04945456.1| Transcription-repair coupling factor [Burkholderia dolosa AUO158]
 gi|124894747|gb|EAY68627.1| Transcription-repair coupling factor [Burkholderia dolosa AUO158]
          Length = 1164

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 158/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 604  KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 663

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F+ ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 664  VALLSPTTLLAEQHTQTFVDRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 722

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 723  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 782

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
             D S I   P  R  IKT +    R +E + R  ++  L  G + Y++  ++E  E +++
Sbjct: 783  RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 839

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                +V           + I I HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 840  MLEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 890

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
             A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 891  SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEE 950

Query: 617  ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
               GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL
Sbjct: 951  LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDL 1006

Query: 674  TSVRGQSIRILLY 686
            T+    +  I L+
Sbjct: 1007 TAPLAATTEINLH 1019


>gi|307705912|ref|ZP_07642750.1| transcription-repair coupling factor [Streptococcus mitis SK597]
 gi|307620573|gb|EFN99671.1| transcription-repair coupling factor [Streptococcus mitis SK597]
          Length = 1168

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 154/437 (35%), Positives = 238/437 (54%), Gaps = 28/437 (6%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           I L   R Q K   G   + + +         P+  T  Q  ++++I +DM     M R+
Sbjct: 580 IKLYSERSQLK---GFAFSADDEDQHAFDDAFPYVETDDQLRSVEEIKRDMQASQPMDRL 636

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           L GDVG GKT VA+ A   AV    Q V++ P  +LAQQHY   K+  QN  + +++++ 
Sbjct: 637 LVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVLAQQHYTNFKERFQNFAVNIDVLSR 696

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
              +  + + LE++ +GQ  I+IGTH +    + +  L L+I+DE+ RFGV+ +  L + 
Sbjct: 697 FRSKKEQTETLEKLKNGQVDILIGTHRVLSKDVVFADLGLMIIDEEQRFGVKHKETLKEL 756

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N  D VI     
Sbjct: 757 KKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKN--DSVIR--DA 812

Query: 478 VLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESV 533
           VL E   G + Y++  +++        ++ ++ + L E    +SI  +HG+MS+I  E+ 
Sbjct: 813 VLREMERGGQVYYLYNKVD--------TIDQKVSELQELIPEASIGYVHGQMSEIQLENT 864

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H GL+ L+QLRGRVGR   I+   
Sbjct: 865 LLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGLSTLYQLRGRVGRSNRIAYAY 924

Query: 594 LLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
           L+Y P   +S+ S  RL  +K  TE   GF IA  DL  R  G +LG  QSG    +   
Sbjct: 925 LMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNLLGKSQSGFIDSV--G 982

Query: 649 PELHDSLLE--IARKDA 663
            EL+  LLE  IA+++ 
Sbjct: 983 FELYSQLLEEAIAKRNG 999


>gi|58336612|ref|YP_193197.1| transcriptional repair coupling factor [Lactobacillus acidophilus
           NCFM]
 gi|58253929|gb|AAV42166.1| transcriptional repair coupling factor [Lactobacillus acidophilus
           NCFM]
          Length = 1165

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 237/430 (55%), Gaps = 19/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +K  G   + +  + +K     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQRKFDDAFPYPETADQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R++ GDVG GKT VAL A   AV+   Q   + P  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAVQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  + + +++     A  ++ +E +  G+  +++GTH +    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNIAMLSRFQTPAESKEIIEGLKDGKIDLVVGTHRILSKDVEFKNLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +  + +I  V++   L+ +  +G + +++  +I     S+    VE+   L  +  +
Sbjct: 801 QTYV--MEQIPSVVKDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQQLIPN--A 850

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL
Sbjct: 851 RIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 910

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF IA  DL  R  G
Sbjct: 911 YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970

Query: 632 EILGIKQSGM 641
            +LG +Q G 
Sbjct: 971 NMLGAQQHGF 980


>gi|310824213|ref|YP_003956571.1| transcription-repair-coupling factor [Stigmatella aurantiaca DW4/3-1]
 gi|309397285|gb|ADO74744.1| Transcription-repair-coupling factor [Stigmatella aurantiaca DW4/3-1]
          Length = 1194

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 215/382 (56%), Gaps = 21/382 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +  F  T  Q  AI+D+L DM +   M R++ GDVG GKT VA+ A   A     Q  ++
Sbjct: 644  DFEFEETPDQAKAIEDVLADMQKPTPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVL 703

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +LAQQH+   KK  ++  I VE+I+G       R+ L+R   G+  I+IGTH L  
Sbjct: 704  VPTTVLAQQHFLSFKKRFKDYPITVEVISGLKKPPEVRELLKRAKEGRVDILIGTHKLLG 763

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              + +  L L+IVDE+ RFGV+Q+ +L +  T   VL +TATPIPRTL ++  G  D+S 
Sbjct: 764  GDVAFKDLGLLIVDEEQRFGVKQKEQLKRLRTQVDVLTLTATPIPRTLHMSMSGVRDMSI 823

Query: 448  ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSV 503
            I   P  R+ I+T ++  +   I E I+R    ++ G + +++  +++     E   R +
Sbjct: 824  IATPPQDRRAIRTFVMKFDPQVIQEAIQR---EVARGGQVFFVHNRVQSIASMEKLLREL 880

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            V +          SI + HG+M +   E VM +F     ++L+ T++IE GID+  A+ +
Sbjct: 881  VPKV---------SIGVAHGQMGEGQLERVMLAFTEKQHQVLLCTSIIESGIDISSANTM 931

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618
            II  A+ FGLAQL+QLRGRVGR +E +   LL      +++++  RL VL+N  +   GF
Sbjct: 932  IINRADAFGLAQLYQLRGRVGRSKERAYAYLLVPARRAVTRDAQRRLEVLQNFTELGAGF 991

Query: 619  LIAEEDLKQRKEGEILGIKQSG 640
             IA  DL+ R  G +LG KQSG
Sbjct: 992  SIASHDLEIRGAGNLLGDKQSG 1013


>gi|258542202|ref|YP_003187635.1| DNA helicase transcription-repair coupling factor [Acetobacter
            pasteurianus IFO 3283-01]
 gi|256633280|dbj|BAH99255.1| DNA helicase transcription-repair coupling factor [Acetobacter
            pasteurianus IFO 3283-01]
 gi|256636339|dbj|BAI02308.1| DNA helicase transcription-repair coupling factor [Acetobacter
            pasteurianus IFO 3283-03]
 gi|256639392|dbj|BAI05354.1| DNA helicase transcription-repair coupling factor [Acetobacter
            pasteurianus IFO 3283-07]
 gi|256642448|dbj|BAI08403.1| DNA helicase transcription-repair coupling factor [Acetobacter
            pasteurianus IFO 3283-22]
 gi|256645503|dbj|BAI11451.1| DNA helicase transcription-repair coupling factor [Acetobacter
            pasteurianus IFO 3283-26]
 gi|256648556|dbj|BAI14497.1| DNA helicase transcription-repair coupling factor [Acetobacter
            pasteurianus IFO 3283-32]
 gi|256651609|dbj|BAI17543.1| DNA helicase transcription-repair coupling factor [Acetobacter
            pasteurianus IFO 3283-01-42C]
 gi|256654600|dbj|BAI20527.1| DNA helicase transcription-repair coupling factor [Acetobacter
            pasteurianus IFO 3283-12]
          Length = 1158

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 152/432 (35%), Positives = 228/432 (52%), Gaps = 32/432 (7%)

Query: 258  EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            EG+  +   R  PF  T  Q  AI D+L+DMS    M R++ GDVG GKT VAL A   A
Sbjct: 592  EGQWDEFCAR-FPFVETDDQARAIADVLEDMSSGRPMDRLVCGDVGFGKTEVALRAAFVA 650

Query: 318  VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV----EIITGNMPQAHRRKALERIAH 373
              +GGQ  ++ P  +LA+QHY       +   I V     ++TG    A R+     IA 
Sbjct: 651  AMSGGQVAVVVPTTLLARQHYRTFAARFEGFPIKVAQLSRMVTGKEATAVRKG----IAD 706

Query: 374  GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            G  +I+IGTHAL   ++Q+  L L+I+DE+  FGV  + KL       HVL ++ATP+PR
Sbjct: 707  GSVNIVIGTHALLAKTVQFASLELLIIDEEQHFGVSHKEKLKALREDVHVLTLSATPLPR 766

Query: 434  TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQ 491
            TL L+  G  ++S I   P  R  ++T I+P +   I E I+R +     G + + + P+
Sbjct: 767  TLQLSLSGVREMSLIATPPTDRLAVRTFIMPFDSVVIREAIQRERF---RGGQIFCVAPR 823

Query: 492  IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            IE     +   + ER  ++     + +   HGR+S  + E VM  F +G   +L++T ++
Sbjct: 824  IE-----DLDRLAERLTAIVPD--ARLIQAHGRLSATELERVMTEFSDGKYDILLSTNIV 876

Query: 552  EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLS 609
            E G+D+   + +II  A+ FGL QL+QLRGRVGRG++     L +     LS ++  RL 
Sbjct: 877  ESGLDMPAVNTLIIHRADMFGLGQLYQLRGRVGRGKQRGYAYLTWPQTHVLSASAEKRLE 936

Query: 610  VLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA----RKD 662
            V++  +    GF +A  DL  R  G +LG +QSG  + +    EL+  +LE A    R D
Sbjct: 937  VMQTLDTLGAGFTLASHDLDLRGAGNLLGDQQSGHVREVGI--ELYQQMLEDAVADLRSD 994

Query: 663  AKHILTQDPDLT 674
                  +D D T
Sbjct: 995  KNRRAAEDWDWT 1006


>gi|323526062|ref|YP_004228215.1| transcription-repair coupling factor [Burkholderia sp. CCGE1001]
 gi|323383064|gb|ADX55155.1| transcription-repair coupling factor [Burkholderia sp. CCGE1001]
          Length = 1160

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 158/442 (35%), Positives = 231/442 (52%), Gaps = 21/442 (4%)

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            G    +E K   K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL
Sbjct: 585  GHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVAL 644

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A   AV  G Q  +++P  +LA+QH +       +  + +  ++          A+++I
Sbjct: 645  RAAFIAVMGGKQVALLSPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIQQI 704

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
              G   I+IGTH L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPI
Sbjct: 705  NEGSVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPI 764

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWIC 489
            PRTL +   G  D S I   P  R  IKT    + R +E + R  ++  L  G + Y++ 
Sbjct: 765  PRTLGMALEGLRDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLH 821

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             ++E  +  N R ++E          + IA+ HG+M + + E VM  F      +L+ TT
Sbjct: 822  NEVETIE--NRRQMLEALVP-----EARIAVAHGQMHERELERVMRDFVAQRANVLLCTT 874

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
            +IE GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  R
Sbjct: 875  IIETGIDVPSANTILIHRADKFGLAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRR 934

Query: 608  LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            L  ++  E+   GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K
Sbjct: 935  LEAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALK 992

Query: 665  HILTQDPDLTSVRGQSIRILLY 686
                ++PDLT+    +  I L+
Sbjct: 993  D--GKEPDLTAPLAATTEINLH 1012


>gi|78043233|ref|YP_359072.1| transcription-repair coupling factor [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995348|gb|ABB14247.1| transcription-repair coupling factor [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 1160

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 212/379 (55%), Gaps = 17/379 (4%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q  AI+++ +DM +   M R+L GDVG GKT VAL A   AV  G Q  ++ 
Sbjct: 617 FPYEETPDQLKAIEEVKRDMEKPKVMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVLT 676

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQHY   K+      + + +++       +++ ++ +  G+  I+IGTH L QD
Sbjct: 677 PTTLLAQQHYNTFKERFSGYPVEIRLLSRFQTAREQKEIIKELKRGKVDIVIGTHRLLQD 736

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +Q+Y L L+IVDE+ RFGV Q+ +L        VL +TATPIPRTL +  +G  D+S +
Sbjct: 737 DVQFYDLGLMIVDEEQRFGVAQKERLKILTETVDVLTLTATPIPRTLHMALMGIRDLSVL 796

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
              P  R P++T ++  +   I + I R    L  G + +++  ++     S+   V   
Sbjct: 797 NTPPENRFPVQTYVLEEDPFIIRDAIRR---ELGRGGQVFFVHNRV-----SDIDEVAAW 848

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             SL     + +A+ HG+M +   E VM  F +G   +L++TT+IE GID+ + + +II+
Sbjct: 849 VQSLVPE--AKVAVAHGQMKEEQLERVMLEFISGKYDVLVSTTIIETGIDLPNVNTLIIK 906

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIA 621
           NA+ FGLAQL+QLRGRVGR   I+   L+Y     L + +  RL+ +K  TE   G  +A
Sbjct: 907 NADRFGLAQLYQLRGRVGRSNRIAYAYLMYEKDKVLREAAEKRLAAIKEFTEFGSGLKLA 966

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G +LG +Q G
Sbjct: 967 MRDLEIRGAGNLLGPEQHG 985


>gi|299820651|ref|ZP_07052540.1| transcription-repair coupling factor [Listeria grayi DSM 20601]
 gi|299817672|gb|EFI84907.1| transcription-repair coupling factor [Listeria grayi DSM 20601]
          Length = 1186

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/399 (35%), Positives = 216/399 (54%), Gaps = 19/399 (4%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E G     + ++ ++     P+  T  Q  +IK+I +DM +   M R+L GDVG GKT V
Sbjct: 609 EKGYAFTPDSEMQREFEDAFPYQETDDQIRSIKEIKKDMERPRPMDRLLVGDVGYGKTEV 668

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           AL A   A+  G Q   + P  ILAQQHYE +K+  Q   I V +++    +  + + LE
Sbjct: 669 ALRAAFKAIMDGKQVAFLVPTTILAQQHYETMKERFQGFPIEVGLLSRFRTKKQQNETLE 728

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +  G   I++GTH L    + Y  L  ++VDE+ RFGV  + K+        VL +TAT
Sbjct: 729 GLKKGTVDIVVGTHRLLSKDVVYSDLGFLVVDEEQRFGVTHKEKIKTIRAKIDVLTLTAT 788

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYW 487
           PIPRTL ++ LG  D+S I   PA R P++T +   N   I E IER    L+   + Y+
Sbjct: 789 PIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAERNNVMIREAIER---ELAREGQVYY 845

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +  ++E        S+V++ + +      + +A  HG+M++ + ESV+ SF  G   +L+
Sbjct: 846 LYNRVE--------SIVQKADEISALVPDARVAFAHGQMTETELESVIVSFLEGEYDVLV 897

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNS 604
            TT+IE G+D+ + + + +++A+  GL+QL+QLRGRVGR   I+    +Y     L + +
Sbjct: 898 TTTIIETGVDIPNVNTLFVQDADRMGLSQLYQLRGRVGRSNRIAYAYFMYQKDKVLREEA 957

Query: 605 YTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
             RL  +K  TE   GF IA  DL  R  G ILG +Q G
Sbjct: 958 EKRLQAIKEFTELGSGFKIAMRDLSIRGAGNILGAQQHG 996


>gi|220932952|ref|YP_002509860.1| transcription-repair coupling factor [Halothermothrix orenii H 168]
 gi|219994262|gb|ACL70865.1| transcription-repair coupling factor [Halothermothrix orenii H 168]
          Length = 1170

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/377 (36%), Positives = 207/377 (54%), Gaps = 15/377 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI+++  DM     M R+L GDVG GKT VA+ A   AV  G Q  ++ P
Sbjct: 624 PYEETPDQLKAIEEVKNDMESATPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQTAVLVP 683

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHY    +  +N  I +E+I+     A +R+ L+++A G+  IIIGTH L    
Sbjct: 684 TTILAQQHYNTFSERMKNYPINIEMISRFKTPAEQREVLKKLAAGEVDIIIGTHRLLSRD 743

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+I+DE+ RFGV  + K+        VL MTATPIPRTL +  +G  D+S I 
Sbjct: 744 VVFNDLGLLIIDEEQRFGVSHKEKIKDLKRNVDVLTMTATPIPRTLHMALVGVRDMSVIE 803

Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             P  R PI+T I   N+  E+I + ++  L    + Y++  ++E+ +E    +++++  
Sbjct: 804 TPPENRYPIRTYIREFNK--ELIRDAVRKELGREGQVYFVHNRVEDIQEQA--TMIKKLV 859

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                    +A+ HG+M++   E +M  F N    +L+ TT+IE G+D+ + + II+  A
Sbjct: 860 P-----ECRVAVAHGQMNEHKLERLMLDFYNHQYDVLVCTTIIETGLDIPNVNTIIVNRA 914

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYH-----PPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +  GLAQL+QLRGRVGR   I+   LLY      P +++     +    N   GF IA  
Sbjct: 915 DQMGLAQLYQLRGRVGRSNRIAYAYLLYEKDRVLPEVAEKRLRAIKEFTNLGSGFKIAMR 974

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G +LG +Q G
Sbjct: 975 DLEIRGAGNLLGPEQHG 991


>gi|329113371|ref|ZP_08242152.1| Transcription-repair-coupling factor [Acetobacter pomorum DM001]
 gi|326697196|gb|EGE48856.1| Transcription-repair-coupling factor [Acetobacter pomorum DM001]
          Length = 1142

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 149/420 (35%), Positives = 223/420 (53%), Gaps = 31/420 (7%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q  AI D+L+DMS    M R++ GDVG GKT VAL A   A  +GGQ  ++ P
Sbjct: 587 PFVETDDQARAIADVLEDMSSGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGGQVAVVVP 646

Query: 330 IGILAQQHYEFIKKYTQNTQIIV----EIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
             +LA+QHY       +   I V     ++TG    A R+     IA G  +I+IGTHAL
Sbjct: 647 TTLLARQHYRTFAARFEGFPIKVAQLSRMVTGKEATAVRKG----IADGSVNIVIGTHAL 702

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
              ++Q+  L L+I+DE+  FGV  + KL       HVL ++ATP+PRTL L+  G  ++
Sbjct: 703 LAKTVQFASLELLIIDEEQHFGVSHKEKLKALREDVHVLTLSATPLPRTLQLSLSGVREM 762

Query: 446 SKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           S I   P  R  ++T I+P +   I E I+R +     G + + + P+IE     +   +
Sbjct: 763 SLIATPPTDRLAVRTFIMPFDSVVIREAIQRERF---RGGQIFCVAPRIE-----DLDRL 814

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            ER  ++     + +   HGR+S  + E VM  F +G   +L++T ++E G+D+   + +
Sbjct: 815 AERLTAIVPD--ARLIQAHGRLSATELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTL 872

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618
           II  A+ FGL QL+QLRGRVGRG++     L +     LS ++  RL V++  +    GF
Sbjct: 873 IIHRADMFGLGQLYQLRGRVGRGKQRGYAYLTWPQTHVLSASAEKRLEVMQTLDTLGAGF 932

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA----RKDAKHILTQDPDLT 674
            +A  DL  R  G +LG +QSG  + +    EL+  +LE A    R D      +D D T
Sbjct: 933 TLASHDLDLRGAGNLLGDQQSGHVREVGI--ELYQQMLEDAVADLRSDKNRRAAEDRDWT 990


>gi|270159982|ref|ZP_06188638.1| transcription-repair coupling factor [Legionella longbeachae
           D-4968]
 gi|289165275|ref|YP_003455413.1| Transcription-repair coupling factor [Legionella longbeachae
           NSW150]
 gi|269988321|gb|EEZ94576.1| transcription-repair coupling factor [Legionella longbeachae
           D-4968]
 gi|288858448|emb|CBJ12326.1| Transcription-repair coupling factor [Legionella longbeachae
           NSW150]
          Length = 1146

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 152/412 (36%), Positives = 219/412 (53%), Gaps = 21/412 (5%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           I LL +  + + + G    V+     K     PF+ T  Q +AI+ I++DM     M R+
Sbjct: 568 IELLDLYAKREAQPGHQYQVDHSDYAKFASGFPFTETPDQLNAIEQIIKDMESSKPMDRL 627

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA+ A   AV++  Q  ++ P  +LA QH+E  +    +  I +E+++ 
Sbjct: 628 ICGDVGFGKTEVAMRAAFVAVQSNKQVCVLVPTTLLAGQHFESFRDRFADFPINIELLSR 687

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                     L  +  G   I+IGTH LFQ SI +  L L+I+DE+HRFGV+Q+  +   
Sbjct: 688 FRSNKESEAVLAGLKSGTVDIVIGTHKLFQSSIAFKNLGLLIIDEEHRFGVKQKEHIKAL 747

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI----IPINRIDEVIE 473
            T   +L MTATPIPRTL +   G  DIS +T  PA R  IKT       PI R  E I 
Sbjct: 748 RTHVDILSMTATPIPRTLNMAMAGIRDISLMTTPPAKRLAIKTFWQEKKDPIVR--EAI- 804

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L+ +L  G + +++   +E         + E   SL     + I   HG+M + + E V
Sbjct: 805 -LREIL-RGGQVFFLHNNVE-----TIERICEDLQSLVPE--AKIRSAHGQMRERELERV 855

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +    +L+ TT+IE GID+  A+ III+ A+ FGLAQLHQLRGRVGR    +   
Sbjct: 856 MSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAY 915

Query: 594 LLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           LL      L+ ++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG
Sbjct: 916 LLTPNQKSLTSDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGELLGEEQSG 967


>gi|87125795|ref|ZP_01081638.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917]
 gi|86166604|gb|EAQ67868.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917]
          Length = 1184

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 140/422 (33%), Positives = 229/422 (54%), Gaps = 22/422 (5%)

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            G     +G   +++  + P+ PT  Q  A  D+ +DM Q   M R++ GDVG GKT VA+
Sbjct: 593  GFAFPGDGPWQEELEDSFPYEPTPDQLKATADVKRDMEQPQPMDRLVCGDVGFGKTEVAI 652

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A+  A+ AG Q  ++AP  +LAQQH+  + +      I V ++      + R+  LE +
Sbjct: 653  RAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTASERKAILEGL 712

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
              G    ++GTH L   S  + KL L++VDE+ RFGV Q+ K+        VL ++ATPI
Sbjct: 713  KQGTIDAVVGTHQLLSKSTSFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPI 772

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            PRTL ++  G  ++S IT  P  R+PIKT +  ++  + V   ++  L  G + +++ P+
Sbjct: 773  PRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDE-EAVRSAIRQELDRGGQVFYVVPR 831

Query: 492  IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +E  E+  +  R ++     L         + HG+M++ + ES M +F  G   +++ TT
Sbjct: 832  VEGIEEVAAQLRQMLPGLKLL---------VAHGQMAEGELESAMVAFNGGEADVMLCTT 882

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYT 606
            ++E G+D+   + I+IE+A  FGLAQL+QLRGRVGR   I +   L++P    LS  +  
Sbjct: 883  IVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGR-SGIQAHAWLFYPGDASLSDAARQ 941

Query: 607  RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660
            RL  ++       G+ +A  D++ R  G +LG++QSG  +   F +    L +SL EI  
Sbjct: 942  RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQG 1001

Query: 661  KD 662
            +D
Sbjct: 1002 QD 1003


>gi|167563120|ref|ZP_02356036.1| transcription-repair coupling factor [Burkholderia oklahomensis
            EO147]
          Length = 1157

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 157/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 595  KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 654

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + FI ++      + E+      +     A+ +I  G   I+IGT
Sbjct: 655  VALLSPTTLLAEQHTQTFIDRFADWPVRVAELSRFKTAK-EVNAAIAQINEGSVDIVIGT 713

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 714  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 773

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
             D S I   P  R  IKT    + R +E + R  ++  L  G + Y++  ++E  E +++
Sbjct: 774  RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRQA 830

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               ++V           + I I HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 831  MLEALVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 881

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
             A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 882  SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 941

Query: 617  ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
               GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL
Sbjct: 942  LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 997

Query: 674  TSVRGQSIRILLY 686
            T+    +  I L+
Sbjct: 998  TAPLAATTEINLH 1010


>gi|220934531|ref|YP_002513430.1| transcription-repair coupling factor [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995841|gb|ACL72443.1| transcription-repair coupling factor [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1157

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 152/413 (36%), Positives = 222/413 (53%), Gaps = 21/413 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + PF  T  Q  AI+ +L+DM+    M R++ GDVG GKT VA+ A   A  +G Q  ++
Sbjct: 604  SFPFEETPDQARAIEAVLEDMASPRPMDRVVCGDVGFGKTEVAMRAAFVAASSGQQVAVL 663

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +LAQQHY+       +  I +E ++        +  LE +A G+  I+IGTH L Q
Sbjct: 664  VPTTLLAQQHYQNFSDRFADWPIRIESLSRFRSAKDTKAVLEGLADGRVDIVIGTHKLIQ 723

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              +++ +L LVI+DE+HRFGV+ + +L        +L +TATPIPRTL +   G  D+S 
Sbjct: 724  GDVKFKRLGLVIIDEEHRFGVRHKERLKALRAEVDMLTLTATPIPRTLNMALSGLRDLSI 783

Query: 448  ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R  IKT I   N   I E I R    +  G + Y++   + E  E   R + E
Sbjct: 784  IATPPMERHAIKTFISQWNDALIQEAITR---EIRRGGQVYFLHNAV-ESIERKAREIAE 839

Query: 506  RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                      + I I HG+M + + E VM  F +    +L+ TT++E GIDV  A+ III
Sbjct: 840  LVPG------ADIGIAHGQMRESELEKVMLDFYHRRHNVLVCTTIVESGIDVPTANTIII 893

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFLI 620
            + A+  GL+QLHQLRGRVGR    +   L+  HP  ++ ++  RL  +++ ED   GF +
Sbjct: 894  DRADKLGLSQLHQLRGRVGRSHHRAYAYLITPHPSAMTPDAVKRLEAIESLEDLGVGFTL 953

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            A  DL+ R  GE+LG  QSG  + +     L++ LLE A K  K    + PDL
Sbjct: 954  ASHDLEIRGAGELLGEGQSGQTQEIGFT--LYNELLERAVKAMKK--GEMPDL 1002


>gi|238853544|ref|ZP_04643916.1| transcription-repair coupling factor [Lactobacillus gasseri 202-4]
 gi|238833840|gb|EEQ26105.1| transcription-repair coupling factor [Lactobacillus gasseri 202-4]
          Length = 1165

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 232/431 (53%), Gaps = 21/431 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    +   +  E +A  +  L  +++ +K  G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKKRVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKEFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM     M R+L GDVG GKT VAL A   A+  G Q   +AP  ILAQQH+
Sbjct: 621 RSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E ++   +N  +   +++     A  +  +E + +G+  +++GTH L    +++  L L+
Sbjct: 681 ETMQDRFKNFPVNCALLSRFQTPAEVKAIIEGVKNGKIDMVVGTHRLLSKDVKFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T +  +  +  V+   + VL E K+    +++  +I++        VV R   L     
Sbjct: 801 QTYV--MEEMPSVVR--EAVLREMKRNGQVFFLHNRIDD-----IDKVVSRLEELIPE-- 849

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +I+ENA+H+GL+Q
Sbjct: 850 AKIEYIHGRMSENQMEDIMYRFSRNEFDILVTTTIIETGVDMPNVNTMIVENADHYGLSQ 909

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGR+GR   ++    LY P   L++    RLS +++ TE   GF IA  DL  R  
Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGA 969

Query: 631 GEILGIKQSGM 641
           G +LG +Q G 
Sbjct: 970 GNMLGKQQHGF 980


>gi|167570304|ref|ZP_02363178.1| transcription-repair coupling factor [Burkholderia oklahomensis
            C6786]
          Length = 1157

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 157/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 595  KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 654

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + FI ++      + E+      +     A+ +I  G   I+IGT
Sbjct: 655  VALLSPTTLLAEQHTQTFIDRFADWPVRVAELSRFKTAK-EVNAAIAQINEGSVDIVIGT 713

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 714  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 773

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
             D S I   P  R  IKT    + R +E + R  ++  L  G + Y++  ++E  E +++
Sbjct: 774  RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRQA 830

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               ++V           + I I HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 831  MLEALVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 881

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
             A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 882  SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 941

Query: 617  ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
               GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL
Sbjct: 942  LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 997

Query: 674  TSVRGQSIRILLY 686
            T+    +  I L+
Sbjct: 998  TAPLAATTEINLH 1010


>gi|257886022|ref|ZP_05665675.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,501]
 gi|257821878|gb|EEV49008.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,501]
          Length = 1173

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 233/431 (54%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   R+  +  E +A  +  L   ++ +K  G     +    ++     P+S T  Q 
Sbjct: 570 EWTKTKRKVSSKIEDIADDLIKLYAARESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 627

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 628 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 688 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 748 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +T ++  N   I E I R    +  G + +++  ++E  E+K    + +V          
Sbjct: 808 QTYVMEKNPGAIREAIHR---EMGRGGQVFYLYNRVETIEQKVEEIQELVPE-------- 856

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I   HG+M++   E+ +  F  G   +L+ATT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 857 -ARIGYAHGQMTEAQLENTLFEFIEGQYDVLVATTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916 TLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 976 AGNLLGAQQHG 986


>gi|255019853|ref|ZP_05291929.1| Transcription-repair coupling factor [Acidithiobacillus caldus ATCC
           51756]
 gi|254970782|gb|EET28268.1| Transcription-repair coupling factor [Acidithiobacillus caldus ATCC
           51756]
          Length = 1149

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/380 (36%), Positives = 215/380 (56%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q++AI  ++ DM++   M R++ GDVG GKT VAL A   A  +G Q  ++
Sbjct: 598 RFPFEETPDQQAAIDAVIADMTRTQPMDRLICGDVGFGKTEVALRAAFLAAASGAQVAVL 657

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  +       I V +++       RR+ L ++A G   I+IGTH L  
Sbjct: 658 VPTTLLAQQHFENFRDRFAGLPIRVTVLSRFQNARERREILAQLASGAIRIVIGTHRLLS 717

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L L+I+DE+HRFGV+Q+ ++    +   VL +TATPIPRTL L+  G  D+S 
Sbjct: 718 RDVRFCDLGLLILDEEHRFGVRQKEQIKALRSEVDVLTLTATPIPRTLNLSLAGLRDLSI 777

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   P  R+P++T +   +  D V E  +  L  G + Y++  ++   E+  +  R +V 
Sbjct: 778 IATPPERRQPVRTFVQVFSE-DLVREACQRELHRGGQIYYLHNEVRDIERSAATLRRLVP 836

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + + + HG+M + + ESVM  F +    +L+ TT+IE GID   A+ ++I
Sbjct: 837 ---------EARLRVAHGQMPEAELESVMLDFYHQRFDILLCTTIIESGIDNPSANTMLI 887

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620
           + A+ FGLAQLHQLRGRVGR  + + C L    P  +++++  RL  +++ ED   GF +
Sbjct: 888 DRADRFGLAQLHQLRGRVGRSHQRAYCYLFTPDPRAMTEDARRRLDAIQSLEDLGVGFAL 947

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 948 ASHDLEIRGAGELLGDAQSG 967


>gi|116628945|ref|YP_814117.1| transcription-repair coupling factor [Lactobacillus gasseri ATCC
           33323]
 gi|116094527|gb|ABJ59679.1| transcription-repair coupling factor [Lactobacillus gasseri ATCC
           33323]
          Length = 1165

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 232/431 (53%), Gaps = 21/431 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    +   +  E +A  +  L  +++ +K  G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKKRVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKEFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM     M R+L GDVG GKT VAL A   A+  G Q   +AP  ILAQQH+
Sbjct: 621 RSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E ++   +N  +   +++     A  +  +E + +G+  +++GTH L    +++  L L+
Sbjct: 681 ETMQDRFKNFPVNCALLSRFQTPAEVKAIIEGVKNGKIDMVVGTHRLLSKDVKFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T +  +  +  V+   + VL E K+    +++  +I++        VV R   L     
Sbjct: 801 QTYV--MEEMPSVVR--EAVLREMKRNGQVFFLHNRIDD-----IDKVVSRLEELIPE-- 849

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +I+ENA+H+GL+Q
Sbjct: 850 AKIEYIHGRMSENQMEDIMYRFSRNEFDILVTTTIIETGVDMPNVNTMIVENADHYGLSQ 909

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGR+GR   ++    LY P   L++    RLS +++ TE   GF IA  DL  R  
Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGA 969

Query: 631 GEILGIKQSGM 641
           G +LG +Q G 
Sbjct: 970 GNMLGKQQHGF 980


>gi|300934101|ref|ZP_07149357.1| transcription-repair coupling factor [Corynebacterium resistens DSM
            45100]
          Length = 1255

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 137/429 (31%), Positives = 227/429 (52%), Gaps = 19/429 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +AG++  L   +Q     G     +    +++    P++ T+ Q 
Sbjct: 637  DWKNTKRKARGAVRQIAGELVQLYATRQAAP--GYAFGADTPWQREMEEAFPYTETEDQF 694

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ +  DM +   M R++ GDVG GKT VA+ A   AV++G Q  ++ P  +LAQQH 
Sbjct: 695  NAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQHL 754

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  Q+    +  ++     A  R+ ++ +A+G   I+IGTH L Q  IQ+  L LV
Sbjct: 755  NTFTERMQDFPTTIRELSRFTSPAESREVIKAMANGDVDIVIGTHRLLQTGIQWKNLGLV 814

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 815  IVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPQDRHPV 874

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
             T  +       V   ++  L    + +++  +++  E+  ++ R +V           +
Sbjct: 875  LT-YVGQQEDKHVAAAIRRELLRDGQVFYVHNRVKTIERAAADLRRLVPE---------A 924

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HG+MS+   E+ +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QL
Sbjct: 925  RVVVAHGQMSEEQLETTVKGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 984

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR  E      LY P   L++ SY RL+ +    D   G  +A +DL+ R  G
Sbjct: 985  HQLRGRVGRSHERGYAYFLYPPGEVLTETSYDRLTTIAQNNDLGAGMAVAMKDLEMRGAG 1044

Query: 632  EILGIKQSG 640
             +LG +QSG
Sbjct: 1045 NVLGAEQSG 1053


>gi|296111607|ref|YP_003621989.1| transcription-repair coupling factor [Leuconostoc kimchii IMSNU
           11154]
 gi|295833139|gb|ADG41020.1| transcription-repair coupling factor [Leuconostoc kimchii IMSNU
           11154]
          Length = 1174

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 145/434 (33%), Positives = 235/434 (54%), Gaps = 28/434 (6%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R+     E +A  +  L  +++ ++    P +   ++        P +P   Q 
Sbjct: 565 QWAKTKRQVATKIEDIADDLIALYAQREAQQGYAYPPDDTDQLKFDTAFGYPETP--DQI 622

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM +   M R+L GDVG GKT VAL A+  AV AG Q   +AP  IL QQHY
Sbjct: 623 RSIEEIKLDMQKSRPMDRLLVGDVGFGKTEVALRAVFKAVHAGKQVAFLAPTTILVQQHY 682

Query: 339 EFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           E I  ++    +I + +++     A  ++ + ++   +  +++GTH L    + +  L L
Sbjct: 683 ETILARFDDFPKIKIGVLSRFQTTARNKEVIRKLNAHEIDVVVGTHRLLSKDVDFADLGL 742

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV+ + +L Q   +  VL +TATPIPRTL +  +G  D+S I   PA R P
Sbjct: 743 LIIDEEQRFGVKHKERLKQLRHSVDVLTLTATPIPRTLNMAMVGARDLSVIETPPANRYP 802

Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           I+T ++     D VI R  ++  LS   + +++  ++ +         ++R  S  E   
Sbjct: 803 IQTYVL---EADWVIVRNAIEKELSRNGQVFYLHNRVAD---------IDRVASQIEDLV 850

Query: 516 SS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
            S  +A IHG+MS+   ES++  F NG   +L+ TT+IE G+D+ +A+ +I+ENA+H GL
Sbjct: 851 PSARVAAIHGQMSETQLESILYDFLNGNYDVLVTTTIIETGVDIPNANTLIVENADHMGL 910

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLSVLKN-TE--DGFLIAEEDLK 626
           +QL+QLRGRVGR   ++     Y  P S+     +  RL  +++ TE   GF IA  DL 
Sbjct: 911 SQLYQLRGRVGRSTRLAYAYFTY--PFSRTPSEEAEKRLEAIRDFTELGSGFRIAMRDLS 968

Query: 627 QRKEGEILGIKQSG 640
            R  G++LG +Q G
Sbjct: 969 IRGAGDLLGKQQHG 982


>gi|115371924|ref|ZP_01459237.1| transcription-repair coupling factor [Stigmatella aurantiaca
           DW4/3-1]
 gi|115371159|gb|EAU70081.1| transcription-repair coupling factor [Stigmatella aurantiaca
           DW4/3-1]
          Length = 769

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 215/382 (56%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           +  F  T  Q  AI+D+L DM +   M R++ GDVG GKT VA+ A   A     Q  ++
Sbjct: 219 DFEFEETPDQAKAIEDVLADMQKPTPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVL 278

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+   KK  ++  I VE+I+G       R+ L+R   G+  I+IGTH L  
Sbjct: 279 VPTTVLAQQHFLSFKKRFKDYPITVEVISGLKKPPEVRELLKRAKEGRVDILIGTHKLLG 338

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             + +  L L+IVDE+ RFGV+Q+ +L +  T   VL +TATPIPRTL ++  G  D+S 
Sbjct: 339 GDVAFKDLGLLIVDEEQRFGVKQKEQLKRLRTQVDVLTLTATPIPRTLHMSMSGVRDMSI 398

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSV 503
           I   P  R+ I+T ++  +   I E I+R    ++ G + +++  +++     E   R +
Sbjct: 399 IATPPQDRRAIRTFVMKFDPQVIQEAIQR---EVARGGQVFFVHNRVQSIASMEKLLREL 455

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V +          SI + HG+M +   E VM +F     ++L+ T++IE GID+  A+ +
Sbjct: 456 VPKV---------SIGVAHGQMGEGQLERVMLAFTEKQHQVLLCTSIIESGIDISSANTM 506

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618
           II  A+ FGLAQL+QLRGRVGR +E +   LL      +++++  RL VL+N  +   GF
Sbjct: 507 IINRADAFGLAQLYQLRGRVGRSKERAYAYLLVPARRAVTRDAQRRLEVLQNFTELGAGF 566

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL+ R  G +LG KQSG
Sbjct: 567 SIASHDLEIRGAGNLLGDKQSG 588


>gi|325523528|gb|EGD01838.1| transcription-repair coupling factor [Burkholderia sp. TJI49]
          Length = 827

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 159/433 (36%), Positives = 229/433 (52%), Gaps = 27/433 (6%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 266 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 325

Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++P  +LA+QH + F  ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 326 VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTTK-EVNAAIAQINEGSVDIVIGT 384

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 385 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 444

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500
            D S I   P  R  IKT +    R +E + R  ++  L  G + Y++  ++E       
Sbjct: 445 RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVE------- 494

Query: 501 RSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
              +E   ++ E     + IAI HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 495 --TIENRKAMLEELVPEARIAIAHGQMHERELERVMRDFVGQRANVLLCTTIIETGIDVP 552

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
            A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 553 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 612

Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
              GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL
Sbjct: 613 LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 668

Query: 674 TSVRGQSIRILLY 686
           T+    +  I L+
Sbjct: 669 TAPLAATTEINLH 681


>gi|39995128|ref|NP_951079.1| transcription-repair coupling factor [Geobacter sulfurreducens PCA]
 gi|39981890|gb|AAR33352.1| transcription-repair coupling factor [Geobacter sulfurreducens PCA]
 gi|298504158|gb|ADI82881.1| transcription-repair coupling factor [Geobacter sulfurreducens
           KN400]
          Length = 1157

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 211/381 (55%), Gaps = 25/381 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q +AI+D++ DM+    M R++ GDVG GKT VA+     AV  G Q  ++ P 
Sbjct: 618 YEETSDQLAAIEDVIADMTSNRPMDRLVCGDVGYGKTEVAMRGAFKAVMDGKQVAVLVPT 677

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LAQQH E  +       + +E+++       ++  LER+  G   +IIGTH L Q+ +
Sbjct: 678 TVLAQQHLETFRARLGAYPVTIEMVSRFRTPKEQKDILERVKKGTVDVIIGTHRLLQNDV 737

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+IVDE+ RFGV  + KL +   A  +L +TATPIPRTL ++ +G  D+S I  
Sbjct: 738 TFKDLGLLIVDEEQRFGVTHKEKLKKYKAAVDILTLTATPIPRTLYMSLMGIRDLSIIDT 797

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R  +KT +   +  DE+I E +   L  G + +++             + V+   +
Sbjct: 798 PPVDRLAVKTFVARTS--DELIREAVLRELRRGGQVFFV------------HNRVQSIGA 843

Query: 510 LHEHF-----TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +EH       + IA+ HG+M + + E VM  F +G   LL+ TT+IE G+D+  A+ +I
Sbjct: 844 WYEHLRRIVPEAKIAVGHGQMDEGELEKVMLGFMHGETNLLLCTTIIESGLDIPSANTLI 903

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
           ++ A+ FGLAQL+QLRGRVGR  + +   LL      +S ++  RL +++   +   GF 
Sbjct: 904 VDRADTFGLAQLYQLRGRVGRSRQRAYAYLLIPGEGAISSDARERLRIIQELNELGAGFR 963

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  G++LG KQSG
Sbjct: 964 LATHDLEIRGAGDLLGAKQSG 984


>gi|172056088|ref|YP_001812548.1| transcription-repair coupling factor [Exiguobacterium sibiricum
           255-15]
 gi|171988609|gb|ACB59531.1| transcription-repair coupling factor [Exiguobacterium sibiricum
           255-15]
          Length = 1171

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 135/399 (33%), Positives = 221/399 (55%), Gaps = 21/399 (5%)

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
           +G     +    Q    + P+  T  Q  +I++I +DM +   M R+L GDVG GKT VA
Sbjct: 598 VGFAFPEDDDSTQAFEASFPYEETVDQLRSIEEIKKDMERPRPMDRLLCGDVGYGKTEVA 657

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           + A   AV AG Q  ++ P  +LAQQHYE + +   +  I V +++     A  +   + 
Sbjct: 658 IRAAFKAVMAGKQVALLVPTTVLAQQHYETMLERFSDWPINVSVMSRFRSAAELKATKKG 717

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           +  G   +++GTH +    +Q+  + L+I+DE+ RFGV+ + +L Q  T   VL +TATP
Sbjct: 718 LKEGTIDVVVGTHRVLSKDVQFADVGLLIIDEEQRFGVKHKERLKQLKTNVDVLTLTATP 777

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWI 488
           IPRTL ++ +G  D+S +   P  R P++T ++  + I   E +ER    L  G +A+++
Sbjct: 778 IPRTLHMSMIGIRDLSVLETPPENRYPVQTYVMEYDGIVMREALER---ELGRGGQAFFL 834

Query: 489 CPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             ++E  E+K    R++V           + +   HGRM++ + ES + +F  G   +L+
Sbjct: 835 YNRVEGIERKAEEIRALVPE---------ARVVTAHGRMTETELESQLIAFFEGDADVLV 885

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNS 604
           +TT+IE GID+ + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y P   L++ +
Sbjct: 886 STTIIETGIDIPNVNTLIVNDADQMGLSQLYQLRGRVGRSSRVAYSYFTYRPQKRLTEVA 945

Query: 605 YTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
            +RL  +K  TE   GF IA  DL  R  G +LG +QSG
Sbjct: 946 ESRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGSQQSG 984


>gi|296157812|ref|ZP_06840646.1| transcription-repair coupling factor [Burkholderia sp. Ch1-1]
 gi|295892058|gb|EFG71842.1| transcription-repair coupling factor [Burkholderia sp. Ch1-1]
          Length = 1160

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 160/441 (36%), Positives = 228/441 (51%), Gaps = 19/441 (4%)

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            G    +E K   K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL
Sbjct: 585  GHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVAL 644

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A   AV  G Q  +++P  +LA+QH +       +  + +  ++          A+ +I
Sbjct: 645  RAAFIAVMGGKQVALLSPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIHQI 704

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
              G   I+IGTH L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPI
Sbjct: 705  NEGTVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPI 764

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICP 490
            PRTL +   G  D S I   P  R  IKT +      D VI E +   L  G + Y++  
Sbjct: 765  PRTLGMALEGLRDFSVIATAPQKRLAIKTFVR--REEDSVIREAMLRELKRGGQVYFLHN 822

Query: 491  QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            ++E  +  N R ++E          + IA+ HG+M + + E VM  F      +L+ TT+
Sbjct: 823  EVETIE--NRRQMLETLVP-----EARIAVAHGQMHERELERVMRDFVAQRANVLLCTTI 875

Query: 551  IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL 608
            IE GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL
Sbjct: 876  IETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRL 935

Query: 609  SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
              ++  E+   GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K 
Sbjct: 936  EAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKE 993

Query: 666  ILTQDPDLTSVRGQSIRILLY 686
               ++PDLTS    +  I L+
Sbjct: 994  --GKEPDLTSPLAATTEINLH 1012


>gi|134295974|ref|YP_001119709.1| transcription-repair coupling factor [Burkholderia vietnamiensis G4]
 gi|134139131|gb|ABO54874.1| transcription-repair coupling factor [Burkholderia vietnamiensis G4]
          Length = 1151

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 158/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 596  KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 655

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F  ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 656  VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 714

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 715  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
             D S I   P  R  IKT +    R +E + R  ++  L  G + Y++  ++E  E +++
Sbjct: 775  RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 831

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               ++V           + I I HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 832  MLEALVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 882

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
             A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 883  SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEE 942

Query: 617  ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
               GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL
Sbjct: 943  LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDL 998

Query: 674  TSVRGQSIRILLY 686
            T+    +  I L+
Sbjct: 999  TAPLAATTEINLH 1011


>gi|17546361|ref|NP_519763.1| transcription-repair coupling factor protein [Ralstonia
           solanacearum GMI1000]
 gi|17428658|emb|CAD15344.1| probable transcription-repair coupling factor protein [Ralstonia
           solanacearum GMI1000]
          Length = 1157

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 149/431 (34%), Positives = 221/431 (51%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R+        A ++  L  R+  ++    P+       +    +  F  T  Q 
Sbjct: 564 QWDKAKRKAAQQIRDTAAELLNLYARRALRQGFAFPLAPNDY--EAFAESFGFDETPDQA 621

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QHY
Sbjct: 622 AAITAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHY 681

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +     +  + +  I+    +     A+E I  G   I+IGTH L    +++ +L LV
Sbjct: 682 QTLADRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVKFNRLGLV 741

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 742 IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 801

Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           KT +    R ++ + R  ++  L  G + Y++  ++E  E K +    +V          
Sbjct: 802 KTFV---RREEDGVLREAILRELKRGGQVYFLHNEVETIENKRAKLEELVPE-------- 850

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + +A+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLA
Sbjct: 851 -ARVAVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLA 909

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QLHQLRGRVGR    +   LL H    L+K S  RL  ++  E+   GF +A  DL+ R 
Sbjct: 910 QLHQLRGRVGRSHHQAYAYLLVHDADGLTKQSQRRLEAIQQMEELGSGFYLAMHDLEIRG 969

Query: 630 EGEILGIKQSG 640
            GE+LG KQSG
Sbjct: 970 AGEVLGDKQSG 980


>gi|295692138|ref|YP_003600748.1| transcription-repair coupling factor [Lactobacillus crispatus ST1]
 gi|295030244|emb|CBL49723.1| Transcription-repair coupling factor [Lactobacillus crispatus ST1]
          Length = 1164

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 142/429 (33%), Positives = 233/429 (54%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +K  G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            ++K+I QDM     M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSVKEIKQDMESSKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++        ++ +E + +G+  +++GTH +    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPVESKEIIEGLKNGKVDLVVGTHRILSQDVKFKNLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +  + +I  V+    L+ +  +G + +++  +I     S+    VE+   L     +
Sbjct: 801 QTYV--MEQIPSVVRDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQELMPQ--A 850

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL
Sbjct: 851 RIAAAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 910

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF IA  DL  R  G
Sbjct: 911 YQLRGRIGRSARLAYAYFLYKPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 971 NMLGAQQHG 979


>gi|153811642|ref|ZP_01964310.1| hypothetical protein RUMOBE_02034 [Ruminococcus obeum ATCC 29174]
 gi|149832383|gb|EDM87468.1| hypothetical protein RUMOBE_02034 [Ruminococcus obeum ATCC 29174]
          Length = 1108

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 148/464 (31%), Positives = 250/464 (53%), Gaps = 19/464 (4%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  + +R R A   +    + L  +R++ +  +  P  V  +  +++    P+  T+ Q
Sbjct: 514 EWKKTKSRVRGAVQNIARELVELYAVRQEKEGYVCGPDTVWQREFEEMF---PYEETEDQ 570

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            +AI+D  +DM     M R++ GDVG GKT VAL A   AV+   Q V + P  ILAQQ 
Sbjct: 571 LAAIEDTKKDMESTKIMDRLVCGDVGYGKTEVALRAAFKAVQESRQVVYLVPTTILAQQV 630

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y    +  +   + V+++      A ++K +  +  GQ  I++GTH +    ++Y  L L
Sbjct: 631 YNTFIQRMKEFPVRVDLLCRFRTAAQQKKTIADLKKGQVDIVVGTHRVLSKDVEYKNLGL 690

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S + E P  R P
Sbjct: 691 LIIDEEQRFGVVHKEKIKQLKKDIDVLTLTATPIPRTLHMSMIGIRDMSVLEEPPMDRVP 750

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           I+T ++  +  + V E +   L  G + Y++  ++     ++   V  R   L     + 
Sbjct: 751 IQTYVMEYDE-ETVREAINRELRRGGQVYYVYNRV-----NDIADVTTRIAKLLPD--AR 802

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +   HG+MS+ + E+VM +F NG   +L++TT+IE G+D+ + + +II +++ +GL+QL+
Sbjct: 803 VDFAHGQMSERELEAVMYAFINGDIDVLVSTTIIETGLDISNVNTMIIHDSDRYGLSQLY 862

Query: 578 QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGR+GR    +   L+Y  +  L + +  RLS ++   D   GF IA  DL+ R  G 
Sbjct: 863 QLRGRIGRSNRTAYAFLMYRRNTMLKETAEKRLSAIREYTDLGSGFKIAMRDLELRGAGN 922

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           +LG +Q G    +    +L+  +L  A K+AK I T +   T++
Sbjct: 923 LLGAEQHGHMNAV--GYDLYCKMLSEAVKEAKGIHTMEDFETTI 964


>gi|269926461|ref|YP_003323084.1| transcription-repair coupling factor [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790121|gb|ACZ42262.1| transcription-repair coupling factor [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 1150

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 144/416 (34%), Positives = 226/416 (54%), Gaps = 21/416 (5%)

Query: 235 AGQIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           A Q+A  L++    +EI  G   + + ++ ++     P+  T  Q +AI+D+  DM    
Sbjct: 562 ADQLAKELLQLYAAREIAKGHSFSPDNELHKEFESAFPYVETDDQLAAIEDVKADMESPK 621

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA QHYE  +       I V
Sbjct: 622 PMDRLICGDVGYGKTEVALRAAFKAVADGKQVAVLVPTTVLALQHYETFRSRFNPFGIRV 681

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
           E+++    +  R + LE +  G   I+IGTH + Q ++ +  L LVIVDE+ RFGV+ + 
Sbjct: 682 EMLSRLRTKKERDQVLEDLQKGNVDIVIGTHTILQKNVVFKDLGLVIVDEEQRFGVKHKE 741

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L Q  T   VL +TATPIPRTL +   G  D+S I   P  R P+ T I+P N  D +I
Sbjct: 742 TLKQIRTQVDVLTLTATPIPRTLQMALSGVRDMSVIETAPEDRLPVYTYIVPKN--DSII 799

Query: 473 ERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDID 529
            R  ++  L  G + +++  ++++        + +  + L E    + I + HG+M +  
Sbjct: 800 -RDSIIRELERGGQVFYVHNRVQD--------IYKVAHKLQEMVPEARITVAHGQMPEQQ 850

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
            E VM  F +    +L+ TT+IE G+D+ +A+ +I+++A H GLAQL+QLRGRVGR    
Sbjct: 851 LEQVMLDFMHHHYDVLVCTTIIESGLDIPNANTLIVDDATHMGLAQLYQLRGRVGRSSNR 910

Query: 590 SSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           +   L+Y P   +++++  RL  +        GF +A +DL+ R  G  LG +QSG
Sbjct: 911 AYAYLMYRPDARMTEDAQKRLEAISEATQLGAGFRVAMKDLEIRGAGNFLGPEQSG 966


>gi|52841189|ref|YP_094988.1| transcription repair coupling factor [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628300|gb|AAU27041.1| transcription repair coupling factor [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 1153

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 144/384 (37%), Positives = 203/384 (52%), Gaps = 17/384 (4%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           K     PF+ T  Q  AI+ I++DM     M R++ GDVG GKT VA+ A   AV+ G Q
Sbjct: 595 KFASGFPFTETPDQLQAIEQIIKDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQ 654

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             I+AP  +LA QH+E  +    +  + +E+++           L  +  G+  I+IGTH
Sbjct: 655 VCILAPTTLLAGQHFESFRDRFADFPVNIELLSRFRSNKESEAVLAALQSGKVDIVIGTH 714

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            LFQ++I +  L L+I+DE+HRFGV+Q+  +    T   +L MTATPIPRTL +   G  
Sbjct: 715 KLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIR 774

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           DIS I   PA R  IKT     N +      L+ +L  G+  Y            N    
Sbjct: 775 DISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYL----------HNNVQT 824

Query: 504 VERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           +ER     E     + I   HG+M +   E +M  F +    +L+ TT+IE GID+  A+
Sbjct: 825 IERVCQDLEALVPEAKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTAN 884

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED--- 616
            III+ A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RL  + + ED   
Sbjct: 885 TIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGA 944

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF +A  DL+ R  GE+LG +QSG
Sbjct: 945 GFTLATHDLEIRGAGELLGEEQSG 968


>gi|161506855|ref|YP_001576809.1| transcriptional repair coupling factor [Lactobacillus helveticus
           DPC 4571]
 gi|160347844|gb|ABX26518.1| transcriptional repair coupling factor [Lactobacillus helveticus
           DPC 4571]
          Length = 1165

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 237/430 (55%), Gaps = 19/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +K  G   + +  + ++     P++ T  Q 
Sbjct: 563 EWAKIKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFEDAFPYAETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R++ GDVG GKT VAL A   A++   Q   +AP  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAIQDNKQVAFLAPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++     A  ++ +E +  G+  +++GTH L    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTLAESKEIIEGLKEGKIDLVVGTHRLLSKDVEFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +  + +I  V+    L+ +  +G + +++  +I     S+    VE+   L  +  +
Sbjct: 801 QTYV--MEQIPSVVRDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQQLIPN--A 850

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL
Sbjct: 851 RIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 910

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF IA  DL  R  G
Sbjct: 911 YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970

Query: 632 EILGIKQSGM 641
            +LG +Q G 
Sbjct: 971 NMLGAQQHGF 980


>gi|323701604|ref|ZP_08113276.1| transcription-repair coupling factor [Desulfotomaculum nigrificans
            DSM 574]
 gi|323533377|gb|EGB23244.1| transcription-repair coupling factor [Desulfotomaculum nigrificans
            DSM 574]
          Length = 1169

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 146/420 (34%), Positives = 232/420 (55%), Gaps = 27/420 (6%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
              P+  T  Q  AI ++ +DM ++  M R+L GDVG GKT VAL A   AV    Q  ++
Sbjct: 622  QFPYEETPDQLRAIAEVKRDMEKERPMDRLLCGDVGYGKTEVALRAAFKAVMDNKQVAVL 681

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHY   ++   N  I +E+++       +R+ L  +A G+  ++IGTH L Q
Sbjct: 682  VPTTILAQQHYNTFRERFANYPIRIEMLSRFRTPKEQRQVLAGLATGEVDVVIGTHRLVQ 741

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
            D + +  L L++VDE+ RFGV  + +L Q      VL +TATPIPRTL ++ +G  D S 
Sbjct: 742  DDVIFKDLGLLVVDEEQRFGVAHKERLKQMRKNVDVLTLTATPIPRTLHMSLVGVRDTSV 801

Query: 448  ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            +   P  R P++T ++  +   I E I R    L+ G + Y++  ++ +         ++
Sbjct: 802  LETPPEERFPVQTYVLEEDPTLIREAIRR---ELNRGGQVYFVHNRVMD---------LD 849

Query: 506  RFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            R     +     + IA+ HG+M + + E +M  F +G   +L+ TT++E G+D+ + + +
Sbjct: 850  RLAGWLQDLVPEARIAVAHGQMKEDELEQIMLEFMDGAYDVLVCTTIVETGLDISNVNTL 909

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGF 618
            I+++A+HFGL+QL+QLRGRVGR   ++    L+     L++ S  RLS ++  TE   GF
Sbjct: 910  IVKDADHFGLSQLYQLRGRVGRTNRLAYAYFLFRRDKVLTEVSERRLSAIREFTEFGSGF 969

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQP--ELHDSLLEIARKDAKHILTQDPDLTSV 676
             IA  DL+ R  G ILG +Q G     IA+   +L+  LLE A  +A+    + P  T+V
Sbjct: 970  KIAMRDLEIRGAGNILGAEQHGH----IAEVGFDLYCRLLEEAVHEARGEKVEQPVDTAV 1025


>gi|256828791|ref|YP_003157519.1| transcription-repair coupling factor [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577967|gb|ACU89103.1| transcription-repair coupling factor [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1146

 Score =  221 bits (563), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 213/378 (56%), Gaps = 19/378 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T+ QE AI D+L DM +   M R++ GDVG GKT VAL A   AV  G Q  ++ P 
Sbjct: 600 FEETRDQEKAIADVLADMEKPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVALLCPT 659

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH++  ++  +   I V +++  +P A +++ LE    GQ  ++IGTH +    +
Sbjct: 660 TVLAEQHFQTFRQRMEPFSITVGLLSRFVPAAGQKRTLEAARRGQVDVLIGTHRMLSKDV 719

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+I+DE+ RFGV+ + ++ +  +   VL +TATPIPRTL L+  G   +S I  
Sbjct: 720 EFANLALLILDEEQRFGVKHKERIKKMRSTIDVLTLTATPIPRTLQLSLSGIRGLSVIET 779

Query: 451 KPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  RKP++T ++  +  ++  ++ER    L+ G + +W+  +++         VVE  +
Sbjct: 780 PPRDRKPVETSLLERDPAQLKVILER---ELARGGQVFWVYNRVQ-----GLERVVEFVS 831

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           SL     + + + HG+M   D E  M  F +G   +L+ T +IE G+D   A+ +I++ A
Sbjct: 832 SLVP--GARVGMGHGQMKAHDLEETMHKFWHGELDVLVCTAIIESGLDFPRANTLIVDQA 889

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVLKNTE---DGFLIAE 622
           + FGL QL+QLRGRVGR  E +    +  P L +    S  RL ++ + +    GF +A 
Sbjct: 890 QLFGLGQLYQLRGRVGRSSEQAYAYFII-PDLDRLQETSRKRLKIILDMDYLGAGFKVAM 948

Query: 623 EDLKQRKEGEILGIKQSG 640
           EDL+ R  G ILG  QSG
Sbjct: 949 EDLRLRGAGNILGEAQSG 966


>gi|257484416|ref|ZP_05638457.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 534

 Score =  221 bits (563), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 140/361 (38%), Positives = 202/361 (55%), Gaps = 17/361 (4%)

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY   +    
Sbjct: 2   DMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYNSFRDRFA 61

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI+DE+HRF
Sbjct: 62  DWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVIIDEEHRF 121

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++T ++  N
Sbjct: 122 GVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQN 181

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
           +   + E L   L  G + Y++   ++  EK  ++   +V           + I I HG+
Sbjct: 182 K-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPE---------ARIGIGHGQ 231

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQLRGRVG
Sbjct: 232 MRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVG 291

Query: 585 RGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQS 639
           R    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+LG  QS
Sbjct: 292 RSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQS 351

Query: 640 G 640
           G
Sbjct: 352 G 352


>gi|218777910|ref|YP_002429228.1| transcription-repair coupling factor [Desulfatibacillum alkenivorans
            AK-01]
 gi|218759294|gb|ACL01760.1| transcription-repair coupling factor [Desulfatibacillum alkenivorans
            AK-01]
          Length = 1179

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 213/381 (55%), Gaps = 19/381 (4%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            N  +  T  Q  AI D+L DM  +  M R++ GDVG GKT VAL A   AV    Q   +
Sbjct: 633  NFEYEETPDQAKAINDVLADMENRRPMDRLICGDVGYGKTEVALRASFKAVSDSKQTAFV 692

Query: 328  APIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
             P  IL++QHY  F+K+Y +   + +  +      A +++ L+ + +G   I+IGTH++ 
Sbjct: 693  TPTTILSEQHYRTFLKRY-EGYPVKIACLNRFRKAAEKKEILKGLENGDIDIVIGTHSVL 751

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            Q S+Q+  L LVI+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ +G  DI+
Sbjct: 752  QKSVQFKDLRLVIIDEEQRFGVKHKETLKKIRATVDVLALTATPIPRTLHMSMVGIRDIT 811

Query: 447  KITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
             I   P  R+PI T    +++ DEVI  E ++  L+   + +++  +++     +  ++ 
Sbjct: 812  VINTPPEQRRPITTY---VSKFDEVIAAEAIRAELARKGQVFFVHNRVQ-----SIDAMA 863

Query: 505  ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             R   L     + + + HG+MS+   E VM  F N    LL+ T +IE G+D+  A+ I+
Sbjct: 864  GRLKRLVPE--ARVGVAHGQMSETMLEKVMIKFVNHEIDLLVCTAIIESGLDIPAANTIL 921

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
            I  A+ FGLAQ++QLRGRVGRG++ +   L       L++++  RL VL    D   GF 
Sbjct: 922  INRADMFGLAQIYQLRGRVGRGDDQAYAYLFIPDESVLTRDAQRRLKVLMEHSDLGAGFA 981

Query: 620  IAEEDLKQRKEGEILGIKQSG 640
            IA  DL+ R  G ILG  QSG
Sbjct: 982  IAMSDLQIRGGGTILGSAQSG 1002


>gi|87199999|ref|YP_497256.1| transcription-repair coupling factor [Novosphingobium aromaticivorans
            DSM 12444]
 gi|87135680|gb|ABD26422.1| transcription-repair coupling factor [Novosphingobium aromaticivorans
            DSM 12444]
          Length = 1164

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 153/442 (34%), Positives = 240/442 (54%), Gaps = 28/442 (6%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +AGQ+      +  ++ + +P++         +   P+  T+ QE AI D+L DM++   
Sbjct: 575  MAGQLMATAAHRALRQGLVLPVDPASY--GPFIDRFPWDETEDQERAIDDVLGDMAEGKP 632

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIV 352
            M R++ GDVG GKT VAL A   A   G Q  ++AP  +LA+QHY  F++++     + +
Sbjct: 633  MDRLVCGDVGFGKTEVALRAAFVAAMQGVQVAVVAPTTLLARQHYANFVERFN-GFPLQI 691

Query: 353  EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
              ++  +P     +    +A G+  I+IGTHAL   S+++ +L LVIVDE+ RFGV  + 
Sbjct: 692  GRLSRLVPAKEASETRAGLADGRVDIVIGTHALLSKSVEFKRLGLVIVDEEQRFGVTHKE 751

Query: 413  KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            KL +     HVL +TATPIPRTL +   G  ++S I   P  R   +T ++P    D+++
Sbjct: 752  KLKELKADVHVLTLTATPIPRTLQMAMSGLRELSTIQTPPVDRLATRTYVMP---WDDMV 808

Query: 473  ERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             R + +L E   G +++ + P+I +  E        R N     F ++    HG+MS  +
Sbjct: 809  MR-EALLREHQRGGQSFIVVPRIADMPELE---EWLRLNVPEVRFVTA----HGQMSPTE 860

Query: 530  KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
             E  M +F     ++L++TT++E GID+  A+ I+I  A+ FGLAQL+QLRGRVGRG +I
Sbjct: 861  VEDRMGAFYEKKYEVLLSTTIVESGIDIPSANTIVIHRADRFGLAQLYQLRGRVGRG-KI 919

Query: 590  SSCILLYHP---PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK 643
             +   L  P    LS+ +  RL VL + +    GF +A  DL  R  G +LG +QSG  K
Sbjct: 920  RAYAYLTVPEDMALSEVAEKRLKVLGDLDSLGAGFQLASHDLDIRGAGNLLGDEQSGHIK 979

Query: 644  ---FLIAQPELHDSLLEIARKD 662
               F + Q  L D++L     D
Sbjct: 980  EVGFELYQSMLEDAILAAKAGD 1001


>gi|170692379|ref|ZP_02883542.1| transcription-repair coupling factor [Burkholderia graminis C4D1M]
 gi|170142809|gb|EDT10974.1| transcription-repair coupling factor [Burkholderia graminis C4D1M]
          Length = 1160

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 157/442 (35%), Positives = 231/442 (52%), Gaps = 21/442 (4%)

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            G    +E K   K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL
Sbjct: 585  GHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVAL 644

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A   AV  G Q  +++P  +LA+QH +       +  + +  ++          A+++I
Sbjct: 645  RAAFIAVMGGKQVALLSPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIQQI 704

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
              G   I+IGTH L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPI
Sbjct: 705  NEGSVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPI 764

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWIC 489
            PRTL +   G  D S I   P  R  IKT    + R +E + R  ++  L  G + Y++ 
Sbjct: 765  PRTLGMALEGLRDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLH 821

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             ++E  +  N R ++E          + IA+ HG+M + + E VM  F      +L+ TT
Sbjct: 822  NEVETIE--NRRQMLEALVP-----EARIAVAHGQMHERELERVMRDFVAQRANVLLCTT 874

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
            +IE GIDV  A+ I+I  ++ FGLAQLHQLRGRVGR    +   LL H P  L+K +  R
Sbjct: 875  IIETGIDVPSANTILIHRSDKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQGLTKQAQRR 934

Query: 608  LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            L  ++  E+   GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K
Sbjct: 935  LEAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALK 992

Query: 665  HILTQDPDLTSVRGQSIRILLY 686
                ++PDLT+    +  I L+
Sbjct: 993  D--GKEPDLTAPLAATTEINLH 1012


>gi|170017776|ref|YP_001728695.1| transcription-repair coupling factor [Leuconostoc citreum KM20]
 gi|169804633|gb|ACA83251.1| Transcription-repair coupling factor [Leuconostoc citreum KM20]
          Length = 1178

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 145/433 (33%), Positives = 233/433 (53%), Gaps = 26/433 (6%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  A  E +A  +  L  +++       P +   ++        P +P   Q 
Sbjct: 568 EWAKTKRQVAAKIEDIADDLLDLYAQREALSGYAFPPDDTAQLQFDTTFGYPETP--DQI 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM ++  M R+L GDVG GKT VAL A+  A  AG Q   +AP  IL QQHY
Sbjct: 626 RSIEEIKADMQKERPMDRLLVGDVGFGKTEVALRAVFKAAHAGKQVAFLAPTTILVQQHY 685

Query: 339 E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           E  + +++  + I + +++     A  +K ++ +   +  +++GTH L    + +  L L
Sbjct: 686 ETMLARFSDFSDIRIGVLSRFQTPAQNKKVIKELEAHELDVVVGTHRLLSQDVNFADLGL 745

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV+ + +L Q      VL +TATPIPRTL +  +G  D+S I   PA R P
Sbjct: 746 LIIDEEQRFGVKHKERLKQLRNNVDVLTLTATPIPRTLNMAMVGARDLSVIETPPANRYP 805

Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           I+T ++     D  I R  ++  L+   + +++  ++ +         ++R  S  E   
Sbjct: 806 IQTYVL---EADWTIVRNAIEKELARDGQVFYLHNRVAD---------LDRVASQIEDLV 853

Query: 516 SS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
            S  +A IHG+MS+   ESV+  F NG   +L+ TT+IE G+D+ +A+ +I+ENA+H GL
Sbjct: 854 PSARVASIHGQMSETQLESVLYDFLNGNYDVLVTTTIIETGVDIPNANTLIVENADHMGL 913

Query: 574 AQLHQLRGRVGRGEEISSCILLY---HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQ 627
           +QL+QLRGRVGR   ++     Y     P S+ +  RL  +++ TE   GF IA  DL  
Sbjct: 914 SQLYQLRGRVGRSTRLAYAYFTYPFTRTP-SEEAEKRLEAIRDFTELGSGFRIAMRDLSI 972

Query: 628 RKEGEILGIKQSG 640
           R  G++LG +Q G
Sbjct: 973 RGAGDLLGKQQHG 985


>gi|320102612|ref|YP_004178203.1| transcription-repair coupling factor [Isosphaera pallida ATCC
           43644]
 gi|319749894|gb|ADV61654.1| transcription-repair coupling factor [Isosphaera pallida ATCC
           43644]
          Length = 1111

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 151/439 (34%), Positives = 231/439 (52%), Gaps = 20/439 (4%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA ++  L  ++Q +  I +P  V+  + ++   + P+  T  Q +AI+ I +D  Q   
Sbjct: 532 LAAELIDLQAQRQARPGIALPA-VDSHLMREFAASFPYEETPDQLAAIEAIREDQIQPRP 590

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   AV+AG Q  ++ P  +L +QH    ++      +++E
Sbjct: 591 MDRLVCGDVGFGKTEVAMRAAFRAVDAGKQVAVLVPTTVLCEQHTRSFRERMAEYPVVIE 650

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            I     +   R  LER A G+  I+IGTH + Q  +++  L LVI+DE+ RFGV+ +  
Sbjct: 651 SINRFRTKKQIRDVLERTAQGKVDILIGTHRIVQKDVRFKDLGLVIIDEEQRFGVEDKEW 710

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L    T   VL ++ATPIPRTL ++ LG  DIS +   P GRK I+T I    R DE I 
Sbjct: 711 LKSLRTTVDVLTLSATPIPRTLHMSLLGIRDISNLETPPPGRKAIETRIC---RFDEAII 767

Query: 474 RLKV--VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
           R  +   L+   + Y++  ++      +  ++ +R   +     + I   HG+M     E
Sbjct: 768 RQAIHRELNRNGQVYFVHNRVH-----DLDAIADRLRGIVPE--ARIVTAHGQMPGDQLE 820

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             M +F      +L+ATT+IE G+D+ +A+ I I  A+  GLA LHQLRGRVGR    + 
Sbjct: 821 KAMLAFVRHQADILVATTIIESGLDIPNANTIFINEADRHGLADLHQLRGRVGRSRNRAY 880

Query: 592 CILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
             LL H    ++  +  RL  ++   +   GF IA  DL+ R  G ILG +QSG      
Sbjct: 881 AYLLLHESRAVTPEAARRLKAIEEFTELGAGFKIALRDLEIRGAGNILGAEQSG--HIEA 938

Query: 647 AQPELHDSLLEIARKDAKH 665
              EL+ SLLE A ++  H
Sbjct: 939 VGYELYCSLLETAVRELTH 957


>gi|302380838|ref|ZP_07269301.1| transcription-repair coupling factor [Finegoldia magna
            ACS-171-V-Col3]
 gi|302311333|gb|EFK93351.1| transcription-repair coupling factor [Finegoldia magna
            ACS-171-V-Col3]
          Length = 1168

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 152/447 (34%), Positives = 243/447 (54%), Gaps = 30/447 (6%)

Query: 229  AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
            + DE+    + L   R + K   G   + + +  ++   + P+  T SQ  +I++I  DM
Sbjct: 586  SVDEMADDLVELYSKRAKLK---GYQFSQDTEWQREFEDSFPYEETDSQVRSIEEIKSDM 642

Query: 289  SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
                 M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQH+  IK+  ++ 
Sbjct: 643  ESDRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVAFLVPTTILAQQHFNTIKERFRDY 702

Query: 349  QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
             I VE+++  +  A +++ ++ +  G   +++GTH +   ++++  L L+++DE+ RFGV
Sbjct: 703  PIRVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGV 762

Query: 409  QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-- 466
            + + KL        VL ++ATPIPRTL +   G  D+S + E P  R PI T +   N  
Sbjct: 763  RHKEKLKSMRENVDVLTLSATPIPRTLQMGLTGIRDMSLLEEPPEDRTPISTYVTEYNPS 822

Query: 467  RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--RSVVERFNSLHEHFTSSIAIIHGR 524
             I + I R    L  G + Y++  +IE+  +  F  + +V   N         IAI HGR
Sbjct: 823  LIRDAIIR---ELDRGGQIYFVYNRIEDIDQMEFKLKELVPELN---------IAIAHGR 870

Query: 525  MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
            M++ + E+VM  F++G   LL+ TT+IE G+D+ + + +II NA+  GL+QL+QL+GR+G
Sbjct: 871  MNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKMGLSQLYQLKGRIG 930

Query: 585  RGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQS 639
            R +  S     Y     L++ S  RL  +K+ TE   GF IA  DL+ R  G +LG  Q 
Sbjct: 931  RSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRDLELRGAGNLLGESQH 990

Query: 640  GMPKFLIAQ--PELHDSLLEIARKDAK 664
            G     IA+   +L+  LLE A ++AK
Sbjct: 991  GH----IAKIGYDLYVKLLEQAVREAK 1013


>gi|291457129|ref|ZP_06596519.1| ATP-dependent DNA helicase [Bifidobacterium breve DSM 20213]
 gi|291380964|gb|EFE88482.1| ATP-dependent DNA helicase [Bifidobacterium breve DSM 20213]
          Length = 880

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 134/336 (39%), Positives = 189/336 (56%), Gaps = 26/336 (7%)

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           +P+ + K +   K     AEAF  IH+P     F+    A E L Y+E    Q +LL  R
Sbjct: 289 IPDILPKSIRAAKGLLHRAEAFLAIHDPDSTVRFK---EAIETLRYEEAFVSQASLLKAR 345

Query: 245 KQFKKEIGIPINVEG-------------KIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +   K    P  + G              +  + + ++PF  T  Q   ++DI  D+++ 
Sbjct: 346 QHAHKSSAHPCLLNGDNETGAASTMDVTNLRDRFIASLPFELTAGQHQVVEDIAADLARD 405

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R+LQG+VGSGKT+VAL AM   V AG QAV++AP  +LA+QH+E I K   +  + 
Sbjct: 406 WPMQRLLQGEVGSGKTVVALAAMLQVVGAGYQAVLVAPTQVLAEQHFETIGKMVADLNVP 465

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++DEQHRFGV+QR
Sbjct: 466 VTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQHRFGVEQR 525

Query: 412 LKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
             L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+TV+  +N  
Sbjct: 526 ESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTVV--VNEA 583

Query: 469 D-----EVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           D      +   ++  +  G++AY ICP+I+   E +
Sbjct: 584 DAGTMGRMFAHIRARVDAGERAYIICPRIDTDDEDD 619



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/193 (37%), Positives = 104/193 (53%), Gaps = 2/193 (1%)

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +R   L +      A + GR  D  K  VM  F +G   +L++TTVIEVG+DV  AS 
Sbjct: 685 IADRLQKLPQFAGIRFATLTGRDKDDVKTQVMADFASGETPILVSTTVIEVGVDVKQASC 744

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ N+ DG  IA+
Sbjct: 745 IVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHNSLDGVEIAQ 804

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSI 681
            DL+ R  G++LG  QSG    L     + D+ ++  AR  A+ +L  DP+L     Q  
Sbjct: 805 ADLEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAEQLLEADPELAG-EVQLA 863

Query: 682 RILLYLYQYNEAF 694
             +L   + NE F
Sbjct: 864 GAVLDFTRGNETF 876


>gi|170733304|ref|YP_001765251.1| transcription-repair coupling factor [Burkholderia cenocepacia MC0-3]
 gi|169816546|gb|ACA91129.1| transcription-repair coupling factor [Burkholderia cenocepacia MC0-3]
          Length = 1156

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 158/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 596  KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQ 655

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F  ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 656  VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 714

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 715  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
             D S I   P  R  IKT +    R +E + R  ++  L  G + Y++  ++E  E +++
Sbjct: 775  RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 831

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               ++V           + I I HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 832  MLEALVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 882

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
             A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 883  SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEE 942

Query: 617  ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
               GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL
Sbjct: 943  LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDL 998

Query: 674  TSVRGQSIRILLY 686
            T+    +  I L+
Sbjct: 999  TAPLAATTEINLH 1011


>gi|209520701|ref|ZP_03269451.1| transcription-repair coupling factor [Burkholderia sp. H160]
 gi|209498863|gb|EDZ98968.1| transcription-repair coupling factor [Burkholderia sp. H160]
          Length = 1159

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 163/474 (34%), Positives = 243/474 (51%), Gaps = 21/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++  G    +E K   K   +  F  T  Q 
Sbjct: 554  QWEKAKRKAAQQIRDTAAELLNLYARRAARE--GHAFALEPKDYVKFAESFGFEETPDQA 611

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 612  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 671

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+++I  G   I+IGTH L    +Q+ +L LV
Sbjct: 672  QTFSDRFSDWPVRIAELSRFKSTKEVNAAIQQINEGAVDIVIGTHKLLSSDVQFKRLGLV 731

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 732  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 791

Query: 459  KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            KT +      D VI E +   L  G + Y++  ++E  +  N R ++E          + 
Sbjct: 792  KTFV--RREEDGVIREAMLRELKRGGQVYFLHNEVETIE--NRRQMLEALVP-----EAR 842

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IA+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  ++ FGLAQLH
Sbjct: 843  IAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRSDKFGLAQLH 902

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR    +   LL H P  L+K +  RL  ++  E+   GF +A  DL+ R  GE
Sbjct: 903  QLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGE 962

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            +LG KQSG  + +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 963  VLGDKQSGEIQEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1012


>gi|293380357|ref|ZP_06626428.1| transcription-repair coupling factor [Lactobacillus crispatus
           214-1]
 gi|290923040|gb|EFD99971.1| transcription-repair coupling factor [Lactobacillus crispatus
           214-1]
          Length = 1164

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 142/429 (33%), Positives = 233/429 (54%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +K  G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            ++K+I QDM     M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSVKEIKQDMESSKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++        ++ +E + +G+  +++GTH +    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPVESKEIIEGLKNGKIDLVVGTHRILSQDVKFKNLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +  + +I  V+    L+ +  +G + +++  +I     S+    VE+   L     +
Sbjct: 801 QTYV--MEQIPSVVRDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQELMPQ--A 850

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL
Sbjct: 851 RIAAAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 910

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF IA  DL  R  G
Sbjct: 911 YQLRGRIGRSARLAYAYFLYKPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 971 NMLGAQQHG 979


>gi|238026956|ref|YP_002911187.1| transcription-repair coupling factor [Burkholderia glumae BGR1]
 gi|237876150|gb|ACR28483.1| Transcription-repair coupling factor [Burkholderia glumae BGR1]
          Length = 1157

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 146/387 (37%), Positives = 211/387 (54%), Gaps = 23/387 (5%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 595 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 654

Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++P  +LA+QH + FI ++  +  + V  ++          A+ +I  G   I+IGT
Sbjct: 655 VALLSPTTLLAEQHTQTFIDRFA-DWPVRVAELSRFKSTKEVNAAIRQINEGSVDIVIGT 713

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 714 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 773

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
            D S I   P  R  IKT +    R +E + R  ++  L  G + Y++  ++E  E +++
Sbjct: 774 RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIENRKT 830

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
              ++V           + IAI HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 831 MLEALVPE---------ARIAIAHGQMHERELERVMREFVAQRANVLLCTTIIETGIDVP 881

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
            A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 882 SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 941

Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSG 640
              GF +A  DL+ R  GE+LG KQSG
Sbjct: 942 LGSGFYLAMHDLEIRGTGEVLGDKQSG 968


>gi|256844410|ref|ZP_05549896.1| transcription-repair coupling factor [Lactobacillus crispatus
           125-2-CHN]
 gi|256613488|gb|EEU18691.1| transcription-repair coupling factor [Lactobacillus crispatus
           125-2-CHN]
          Length = 1164

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 142/429 (33%), Positives = 233/429 (54%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +K  G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            ++K+I QDM     M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSVKEIKQDMESSKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++        ++ +E + +G+  +++GTH +    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNTTMLSRFQTPVESKEIIEGLKNGKIDLVVGTHRILSQDVKFKNLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +  + +I  V+    L+ +  +G + +++  +I     S+    VE+   L     +
Sbjct: 801 QTYV--MEQIPSVVRDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQELMPQ--A 850

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL
Sbjct: 851 RIAAAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 910

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF IA  DL  R  G
Sbjct: 911 YQLRGRIGRSARLAYAYFLYKPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 971 NMLGAQQHG 979


>gi|225619936|ref|YP_002721193.1| transcription-repair coupling factor [Brachyspira hyodysenteriae WA1]
 gi|225214755|gb|ACN83489.1| transcription-repair coupling factor [Brachyspira hyodysenteriae WA1]
          Length = 1247

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 139/401 (34%), Positives = 213/401 (53%), Gaps = 19/401 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T  Q  AI DI +DM     M R++ GDVG GKT VA  A+  A+ AG Q  I+ P 
Sbjct: 641  YEETVDQLRAINDIKEDMESGKMMDRLVCGDVGFGKTEVAFRAVFKAIMAGKQCAILCPT 700

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             IL+QQHY   KK  ++  I +E++   +     ++  E +  G   +I+GTH L    I
Sbjct: 701  TILSQQHYNNAKKRFEDFPIKIEVLNRFVTSKQAKRNKELLKEGSCDLIVGTHMLLSKDI 760

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L L+++DE+ RFGV+ +  L +      VL ++ATPIPRTL +   G  DIS I  
Sbjct: 761  EFKNLGLIVIDEEQRFGVKHKEALKKLRLETDVLTLSATPIPRTLNMALTGIRDISIIET 820

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R P+KT +   +  D V+  ++  L    + +++  +I+          +E F  +
Sbjct: 821  PPLNRIPVKTFVTEFSE-DAVVNAIERELKREGQVFYLYNRID---------TIESFALM 870

Query: 511  HEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
             +     + I + HGRM+    E +M  F N    +L++TT+IE GID+ +A+ I+I+NA
Sbjct: 871  IKKLCPKARICVAHGRMTGHQLEKIMGDFINHKYDILVSTTIIENGIDIPNANTILIDNA 930

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
               GL++L+QLRGRVGR +  +   + Y     L++ +Y RL  +    D   GF IA  
Sbjct: 931  NKLGLSELYQLRGRVGRSDREAYAYMFYPSDLALTEVAYKRLEAISEHTDLGAGFKIAMR 990

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            DL+ R  G ILG +QSGM        EL+  +LE A  + K
Sbjct: 991  DLEIRGAGNILGKEQSGM--IYQVGYELYTQMLEEAANEYK 1029


>gi|227544685|ref|ZP_03974734.1| transcription-repair coupling factor [Lactobacillus reuteri
           CF48-3A]
 gi|300909073|ref|ZP_07126536.1| transcription-repair coupling factor [Lactobacillus reuteri SD2112]
 gi|227185331|gb|EEI65402.1| transcription-repair coupling factor [Lactobacillus reuteri
           CF48-3A]
 gi|300894480|gb|EFK87838.1| transcription-repair coupling factor [Lactobacillus reuteri SD2112]
          Length = 1179

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 138/430 (32%), Positives = 233/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R   +  E +A ++  L  +++ +K    P   +  + ++   N P++ T+ Q 
Sbjct: 572 EWAKTKRRVSSKIEDIADELVDLYAKREAEKGYAFP--KDDYLQKQFDANFPYNETRDQL 629

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VA+ A+  AV  G Q   + P  ILAQQHY
Sbjct: 630 RSIDEIKEDMEKPKPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTILAQQHY 689

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +  +   I + +++        ++    +  G   +++GTH +    +++  L L+
Sbjct: 690 NTLMRRFEGFPINIALMSRFKTPKELKETEAGLKDGSVDVVVGTHRILSKDVEFKDLGLL 749

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ LG  D+S +   PAGR PI
Sbjct: 750 IVDEEQRFGVKHKEKLKQLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPI 809

Query: 459 KTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T ++  N     D +I  ++     G + Y++  ++ + +E+     V     L     
Sbjct: 810 QTYVMEQNSSAIRDGIIREMQ----RGGQVYYLHNRVHDIEET-----VAWLQELVPE-- 858

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I  I+G+MS+ + E+V+  F  G   +L+ T++IE G+D+ +A+ + +ENA+  GLAQ
Sbjct: 859 ARIGYINGQMSENELETVLYEFIQGNYDILVTTSIIETGVDIPNANTLFVENADRMGLAQ 918

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+Q+RGR+GR   ++    +Y P   L++    RL+ +++ TE   GF IA  DL  R  
Sbjct: 919 LYQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLAIRGA 978

Query: 631 GEILGIKQSG 640
           G +LG +Q G
Sbjct: 979 GNLLGKQQHG 988


>gi|329120140|ref|ZP_08248810.1| transcription-repair coupling factor [Neisseria bacilliformis ATCC
            BAA-1200]
 gi|327463671|gb|EGF09989.1| transcription-repair coupling factor [Neisseria bacilliformis ATCC
            BAA-1200]
          Length = 1290

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 146/419 (34%), Positives = 227/419 (54%), Gaps = 15/419 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G Q  ++AP 
Sbjct: 745  YEETEDQAAAIAAVIKDLTQARPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPT 804

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +L +QH +       +  + V  ++        R  L  +A G   I+IGTH L QD I
Sbjct: 805  TLLVEQHAQNFADRFADFPVKVAQLSRFNSSKETRATLTGMADGTVDIVIGTHKLVQDDI 864

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L LVI+DE+HRFGV+Q+ +L +      +L +TATPIPRTL +   G  D S IT 
Sbjct: 865  SFKNLGLVIIDEEHRFGVRQKEQLKKLRANVDILTLTATPIPRTLSMALEGLRDFSLITT 924

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P+ R  +KT + P +    V E +   L  G + +++  +++        ++ ER  +L
Sbjct: 925  APSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIENMRERLETL 978

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+ III  A+ 
Sbjct: 979  LPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADK 1036

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            FG+AQLHQLRGRVGR    +   LL    +SK++  RL  +   ++   GF +A +DL+ 
Sbjct: 1037 FGIAQLHQLRGRVGRSHHQAYAYLLTPEYISKDAEKRLDAIAAADELGAGFSLAMQDLEI 1096

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G +  I L+
Sbjct: 1097 RGAGEILGEGQSG--EMVQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLGVTTEIKLH 1151


>gi|224824692|ref|ZP_03697799.1| transcription-repair coupling factor [Lutiella nitroferrum 2002]
 gi|224603185|gb|EEG09361.1| transcription-repair coupling factor [Lutiella nitroferrum 2002]
          Length = 1129

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 150/422 (35%), Positives = 228/422 (54%), Gaps = 21/422 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q SAI+ ++ DM     M R++ GDVG GKT VAL A   AV  G Q  ++ P 
Sbjct: 588 FEETPDQASAIEAVIADMCSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVAVLVPT 647

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH++       +  + +  ++        + AL  +A G   I+IGTH L Q  +
Sbjct: 648 TLLAEQHFQNFSDRFADWPVKIAELSRFRSAKESKAALAGLAEGTVDIVIGTHKLVQPDV 707

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           Q+  L LVI+DE+HRFGV+Q+ +L +      VL +TATPIPRTL +   G  D S IT 
Sbjct: 708 QFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDVLTLTATPIPRTLSMALEGLRDFSAITT 767

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P+ R  +KT I P+    I E + R    L  G + +++  +++       +++ E+  
Sbjct: 768 APSRRLAVKTFISPLANGVIREAVLR---ELKRGGQVFFLHNEVD-----TIQNMQEKLA 819

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L     + I + HG++ + + E VM  F      LL+ +T+IE GID+ +A+ I+I  A
Sbjct: 820 ELLPE--ARIGVAHGQLRERELEQVMRDFLQQRFNLLLCSTIIETGIDIPNANTILINRA 877

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDL 625
           + FGLAQLHQLRGRVGR    +   LL    +++++  RL  ++ +E+   GF +A  DL
Sbjct: 878 DKFGLAQLHQLRGRVGRSHHQAYAYLLTPDGMTRDAQKRLEAIQLSEELGAGFYLAMHDL 937

Query: 626 KQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           + R  GE+LG  QSG M +   A   L   +L+ A +D K   T  PDL +  G +  I 
Sbjct: 938 EIRGAGEVLGEGQSGEMQEVGFA---LFTEMLKQAVRDLKKGKT--PDLDAPLGVTTEIN 992

Query: 685 LY 686
           L+
Sbjct: 993 LH 994


>gi|326795840|ref|YP_004313660.1| transcription-repair coupling factor [Marinomonas mediterranea
           MMB-1]
 gi|326546604|gb|ADZ91824.1| transcription-repair coupling factor [Marinomonas mediterranea
           MMB-1]
          Length = 1136

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 138/380 (36%), Positives = 210/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q+ AI  +++DMS    M R++ GDVG GKT VA+ A   AV++G Q  ++
Sbjct: 589 SFPFEETPDQQMAIDAVIKDMSTGKPMDRLVCGDVGFGKTEVAMRAAFLAVQSGKQVAVL 648

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHYE       +  + +E+++        ++A+ R+  G++ I++GTH L Q
Sbjct: 649 VPTTLLAQQHYENFCDRFADWPVQIELLSRFRSGKQTKEAISRLEEGKSDIVVGTHKLIQ 708

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQ+  L LVI+DE+HRFGV+Q+ +         VL +TATPIPRTL ++  G  D+S 
Sbjct: 709 GDIQFSNLGLVIIDEEHRFGVKQKDQFKALRAEIDVLTLTATPIPRTLNMSLSGIRDLSI 768

Query: 448 ITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   PA R  +KT +   +  +I E I R    L  G + Y++  ++E       +   E
Sbjct: 769 IATPPAKRLSVKTFVKKKDDHQIKEAILR---ELHRGGQVYYLHNEVE-----TIQKAAE 820

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
               L     + + + HG+M + + E VM  F +    +L+ +T+IE GID+ +A+ III
Sbjct: 821 FITELVPE--ARVIVGHGQMRERELEQVMSDFYHKRSNVLVCSTIIETGIDIPNANTIII 878

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLI 620
             A+ FGLAQLHQLRGRVGR    +   LL      ++ ++  RL  +   +    GF +
Sbjct: 879 NRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPQDRKVTGDAEKRLEAITMADTLGAGFTL 938

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 939 ATHDLEIRGTGELLGEGQSG 958


>gi|227878367|ref|ZP_03996322.1| transcriptional repair coupling factor [Lactobacillus crispatus
           JV-V01]
 gi|256849202|ref|ZP_05554635.1| transcriptional repair coupling factor [Lactobacillus crispatus
           MV-1A-US]
 gi|227862046|gb|EEJ69610.1| transcriptional repair coupling factor [Lactobacillus crispatus
           JV-V01]
 gi|256713978|gb|EEU28966.1| transcriptional repair coupling factor [Lactobacillus crispatus
           MV-1A-US]
          Length = 1164

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 142/429 (33%), Positives = 233/429 (54%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +K  G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            ++K+I QDM     M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSVKEIKQDMESSKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++        ++ +E + +G+  +++GTH +    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNTTMLSRFQTPVESKEIIEGLKNGKIDLVVGTHRILSQDVKFKNLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +  + +I  V+    L+ +  +G + +++  +I     S+    VE+   L     +
Sbjct: 801 QTYV--MEQIPSVVRDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQELMPQ--A 850

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL
Sbjct: 851 RIAAAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 910

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF IA  DL  R  G
Sbjct: 911 YQLRGRIGRSARLAYAYFLYKPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 971 NMLGAQQHG 979


>gi|298207099|ref|YP_003715278.1| transcription-repair coupling factor [Croceibacter atlanticus
           HTCC2559]
 gi|83849733|gb|EAP87601.1| transcription-repair coupling factor [Croceibacter atlanticus
           HTCC2559]
          Length = 1126

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 211/376 (56%), Gaps = 13/376 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q SA +D+ +DM  +  M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 556 YEDTPDQSSATEDVKKDMENERPMDRLVCGDVGFGKTEIAIRAAFKAVDNGKQVAVLVPT 615

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH++   +  ++  + VE +        RR+ +  +  G+  IIIGTH L   ++
Sbjct: 616 TILAFQHHKTFSERLKDFPVTVEYLNRFRSAKERRETIADLEAGKVDIIIGTHQLVNKTV 675

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+IVDE+ +FGV  + KL         L +TATPIPRTL  + +   D+S IT 
Sbjct: 676 KFKDLGLLIVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLSTITT 735

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P++T +I  +  + + + ++  +  G + Y++  +IE  KE     +++R    
Sbjct: 736 PPPNRYPVETNVIRFSE-ESIRDAVQYEIQRGGQVYFVHNRIENIKE--VAGMIQRVVP- 791

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + I I HG+M     E +M SF NG   +L++TT+IE G+DV +A+ I I NA +
Sbjct: 792 ----DAKIGIGHGQMEGKKLEQLMLSFMNGDFDVLVSTTIIESGLDVPNANTIFINNANN 847

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
           FGL+ LHQ+RGRVGR  + + C  +  P   ++ ++  R++ L+   D   GF IA +DL
Sbjct: 848 FGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKRITALEQFSDLGSGFNIAMKDL 907

Query: 626 KQRKEGEILGIKQSGM 641
           + R  G++LG +QSG 
Sbjct: 908 EIRGAGDLLGGEQSGF 923


>gi|107028877|ref|YP_625972.1| transcription-repair coupling factor [Burkholderia cenocepacia AU
            1054]
 gi|116689965|ref|YP_835588.1| transcription-repair coupling factor [Burkholderia cenocepacia
            HI2424]
 gi|105898041|gb|ABF80999.1| transcription-repair coupling factor [Burkholderia cenocepacia AU
            1054]
 gi|116648054|gb|ABK08695.1| transcription-repair coupling factor [Burkholderia cenocepacia
            HI2424]
          Length = 1156

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 158/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 596  KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQ 655

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F  ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 656  VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVSAAIAQINEGSVDIVIGT 714

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 715  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
             D S I   P  R  IKT +    R +E + R  ++  L  G + Y++  ++E  E +++
Sbjct: 775  RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 831

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               ++V           + I I HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 832  MLEALVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 882

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
             A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 883  SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEE 942

Query: 617  ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
               GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL
Sbjct: 943  LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDL 998

Query: 674  TSVRGQSIRILLY 686
            T+    +  I L+
Sbjct: 999  TAPLAATTEINLH 1011


>gi|325286644|ref|YP_004262434.1| transcription-repair coupling factor [Cellulophaga lytica DSM 7489]
 gi|324322098|gb|ADY29563.1| transcription-repair coupling factor [Cellulophaga lytica DSM 7489]
          Length = 1113

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 209/376 (55%), Gaps = 13/376 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  A +D+ +DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P 
Sbjct: 552 YEDTPDQSKATEDLKKDMESDRPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPT 611

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH++   +  ++  + V+ +        +R+ LER+A G+  IIIGTH L   ++
Sbjct: 612 TILAFQHHKTFAERLKDMPVTVDYVNRFRTAKEKRETLERLAEGKVDIIIGTHQLVNKNV 671

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+IVDE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S I  
Sbjct: 672 VFKDLGLLIVDEEQKFGVAVKDKLKSIKENVDVLTLTATPIPRTLQFSLMAARDLSTINT 731

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R PI + ++     D + + +   +  G + ++I  +IE  KE     +++R    
Sbjct: 732 APPNRYPIDSHVVRFTE-DTIRDAVSYEIQRGGQVFFIHNRIENIKE--VAGMLQRLVP- 787

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + I I HG+M     E++M +F NG   +L++TT+IE G+DV +A+ I I NA +
Sbjct: 788 ----DAKIGIGHGQMDGKKLETLMLAFMNGEFDVLVSTTIIESGLDVPNANTIFINNANN 843

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDL 625
           FGL+ LHQ+RGRVGR  + + C  +  P   +S ++  R+  L+  TE   GF IA +DL
Sbjct: 844 FGLSDLHQMRGRVGRSNKKAFCYFITPPYDSMSNDARKRIQALEQFTELGSGFNIAMKDL 903

Query: 626 KQRKEGEILGIKQSGM 641
           + R  G+ILG +QSG 
Sbjct: 904 EIRGAGDILGGEQSGF 919


>gi|307609748|emb|CBW99260.1| transcription-repair coupling factor [Legionella pneumophila 130b]
          Length = 1153

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 144/384 (37%), Positives = 202/384 (52%), Gaps = 17/384 (4%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           K     PF+ T  Q  AI+ I++DM     M R++ GDVG GKT VA+ A   AV+ G Q
Sbjct: 595 KFASGFPFTETPDQLQAIEQIIKDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQ 654

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             I+AP  +LA QH+E  +       + +E+++           L  +  G+  I+IGTH
Sbjct: 655 VCILAPTTLLAGQHFESFRDRFAEFPVNIELLSRFRSNKESEAVLAALQSGKVDIVIGTH 714

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            LFQ++I +  L L+I+DE+HRFGV+Q+  +    T   +L MTATPIPRTL +   G  
Sbjct: 715 KLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIR 774

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           DIS I   PA R  IKT     N +      L+ +L  G+  Y            N    
Sbjct: 775 DISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYL----------HNNVQT 824

Query: 504 VERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           +ER     E     + I   HG+M +   E +M  F +    +L+ TT+IE GID+  A+
Sbjct: 825 IERVCQDLEALVPEAKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTAN 884

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED--- 616
            III+ A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RL  + + ED   
Sbjct: 885 TIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGA 944

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF +A  DL+ R  GE+LG +QSG
Sbjct: 945 GFTLATHDLEIRGAGELLGEEQSG 968


>gi|222528653|ref|YP_002572535.1| transcription-repair coupling factor [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455500|gb|ACM59762.1| transcription-repair coupling factor [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 1141

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 139/429 (32%), Positives = 233/429 (54%), Gaps = 18/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++     E++A  +  L  ++Q  K  G   + +    ++     P++ T+ Q 
Sbjct: 554 EWQKQKQKVRKSLEIVAKDLVELYAKRQLGK--GFKFSKDTLWQKEFEEKFPYTETEGQL 611

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I +DM  +  M RIL GDVG GKT VA+ A   AV    Q  ++ P  ILAQQHY
Sbjct: 612 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 671

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                  ++  + +E+++    +  ++K +  +  G   I+IGTH L    +++  L L+
Sbjct: 672 MTFSARMKDFPVTIEVLSRLKSETQQKKIVRGLREGTIDIVIGTHRLLSSDVKFKDLGLL 731

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+H+FGV+ + K+ +  T   VL +TATPIPRTL +  LG  D+S I + P  R P+
Sbjct: 732 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRFPV 791

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++  N   I E I R    +S G + +++  +I++ +E     V  +  +L +  + 
Sbjct: 792 QTFVLEYNERIIKEAILR---EISRGGQVFYLYNRIKDIQE-----VAAKLQNLVDD-SI 842

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A  HG+M + + E V+  F  G   +L+ TT+IE G+D+ + + +I+E+++  GLAQL
Sbjct: 843 KVACAHGQMPEEELERVLLDFIEGRYNVLVCTTIIESGVDMPNVNTLIVEDSDRLGLAQL 902

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QLRGRVGR   ++     +     LS+ +  RL+ +K   +   GF IA  DL+ R  G
Sbjct: 903 YQLRGRVGRSSRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGAGFKIAMRDLEIRGAG 962

Query: 632 EILGIKQSG 640
            +LG  Q G
Sbjct: 963 SLLGKLQHG 971


>gi|303234885|ref|ZP_07321510.1| transcription-repair coupling factor [Finegoldia magna BVS033A4]
 gi|302494003|gb|EFL53784.1| transcription-repair coupling factor [Finegoldia magna BVS033A4]
          Length = 1168

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 152/445 (34%), Positives = 242/445 (54%), Gaps = 30/445 (6%)

Query: 231  DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            DE+    + L   R + K   G   + + +  ++   + P+  T SQ  +I++I  DM  
Sbjct: 588  DEMADDLVELYSKRAKLK---GYQFSQDTEWQREFEDSFPYEETDSQVRSIEEIKADMES 644

Query: 291  KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
               M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQH+  IK+  ++  I
Sbjct: 645  DRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVAFLVPTTILAQQHFNTIKERFRDYPI 704

Query: 351  IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             VE+++  +  A +++ ++ +  G   +++GTH +   ++++  L L+++DE+ RFGV+ 
Sbjct: 705  RVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGVRH 764

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RI 468
            + KL        VL ++ATPIPRTL +   G  D+S + E P  R PI T +   N   I
Sbjct: 765  KEKLKSMRENVDVLTLSATPIPRTLQMGLTGIRDMSLLEEPPEDRTPISTYVTEYNPSLI 824

Query: 469  DEVIERLKVVLSEGKKAYWICPQIEEKKESNF--RSVVERFNSLHEHFTSSIAIIHGRMS 526
             + I R    L  G + Y++  +IE+  +  F  + +V   N         IAI HGRM+
Sbjct: 825  RDAIIR---ELDRGGQIYFVYNRIEDIDQMEFKLKELVPELN---------IAIAHGRMN 872

Query: 527  DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            + + E+VM  F++G   LL+ TT+IE G+D+ + + +II NA+  GL+QL+QL+GR+GR 
Sbjct: 873  EKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKMGLSQLYQLKGRIGRS 932

Query: 587  EEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641
            +  S     Y     L++ S  RL  +K+ TE   GF IA  DL+ R  G +LG  Q G 
Sbjct: 933  DRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRDLELRGAGNLLGESQHGH 992

Query: 642  PKFLIAQ--PELHDSLLEIARKDAK 664
                IA+   +L+  LLE A ++AK
Sbjct: 993  ----IAKIGYDLYVKLLEQAVREAK 1013


>gi|167586917|ref|ZP_02379305.1| transcription-repair coupling factor [Burkholderia ubonensis Bu]
          Length = 1158

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 158/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 596  KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQ 655

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F  ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 656  VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 714

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 715  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
             D S I   P  R  IKT +    R +E + R  ++  L  G + Y++  ++E  E +++
Sbjct: 775  RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 831

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                +V           + IAI HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 832  MLEELVPE---------ARIAIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 882

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
             A+ II+  ++ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 883  SANTIIMHRSDKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 942

Query: 617  ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
               GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL
Sbjct: 943  LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 998

Query: 674  TSVRGQSIRILLY 686
            T+    +  I L+
Sbjct: 999  TAPLAATTEINLH 1011


>gi|169824178|ref|YP_001691789.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328]
 gi|167830983|dbj|BAG07899.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328]
          Length = 1168

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 152/447 (34%), Positives = 243/447 (54%), Gaps = 30/447 (6%)

Query: 229  AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
            + DE+    + L   R + K   G   + + +  ++   + P+  T SQ  +I++I  DM
Sbjct: 586  SVDEMADDLVELYSKRAKLK---GYQFSQDTEWQREFEDSFPYEETDSQVRSIEEIKADM 642

Query: 289  SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
                 M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQH+  IK+  ++ 
Sbjct: 643  ESDRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVAFLVPTTILAQQHFNTIKERFRDY 702

Query: 349  QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
             I VE+++  +  A +++ ++ +  G   +++GTH +   ++++  L L+++DE+ RFGV
Sbjct: 703  PIRVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGV 762

Query: 409  QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-- 466
            + + KL        VL ++ATPIPRTL +   G  D+S + E P  R PI T +   N  
Sbjct: 763  RHKEKLKSMRENVDVLTLSATPIPRTLQMGLTGIRDMSLLEEPPEDRTPISTYVTEYNPS 822

Query: 467  RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--RSVVERFNSLHEHFTSSIAIIHGR 524
             I + I R    L  G + Y++  +IE+  +  F  + +V   N         IAI HGR
Sbjct: 823  LIRDAIIR---ELDRGGQIYFVYNRIEDIDQMEFKLKELVPELN---------IAIAHGR 870

Query: 525  MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
            M++ + E+VM  F++G   LL+ TT+IE G+D+ + + +II NA+  GL+QL+QL+GR+G
Sbjct: 871  MNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKMGLSQLYQLKGRIG 930

Query: 585  RGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQS 639
            R +  S     Y     L++ S  RL  +K+ TE   GF IA  DL+ R  G +LG  Q 
Sbjct: 931  RSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRDLELRGAGNLLGESQH 990

Query: 640  GMPKFLIAQ--PELHDSLLEIARKDAK 664
            G     IA+   +L+  LLE A ++AK
Sbjct: 991  GH----IAKIGYDLYVKLLEQAVREAK 1013


>gi|227903169|ref|ZP_04020974.1| transcriptional repair coupling factor [Lactobacillus acidophilus
           ATCC 4796]
 gi|227868974|gb|EEJ76395.1| transcriptional repair coupling factor [Lactobacillus acidophilus
           ATCC 4796]
          Length = 1165

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 143/431 (33%), Positives = 235/431 (54%), Gaps = 21/431 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +K  G   + +  + +K     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQRKFDDAFPYPETADQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R++ GDVG GKT VAL A   AV+   Q   + P  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAVQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  + + +++     A  ++ +E +  G+  +++GTH +    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNIAMLSRFQTPAESKEIIEGLKDGKIDLVVGTHRILSKDVEFKNLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T +  + +I  V++     L E ++    +++  +I     S+    VE+   L  +  
Sbjct: 801 QTYV--MEQIPSVVK--DACLREMQRYGQVFYLHNRI-----SDIDETVEKLQQLIPN-- 849

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+Q
Sbjct: 850 ARIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQ 909

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF IA  DL  R  
Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGA 969

Query: 631 GEILGIKQSGM 641
           G +LG +Q G 
Sbjct: 970 GNMLGAQQHGF 980


>gi|289166915|ref|YP_003445182.1| transcription-repair coupling factor [Streptococcus mitis B6]
 gi|288906480|emb|CBJ21310.1| transcription-repair coupling factor [Streptococcus mitis B6]
          Length = 1169

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 144/404 (35%), Positives = 229/404 (56%), Gaps = 23/404 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q V++ P
Sbjct: 610  PYVETDDQLRSIEEIKRDMQSSQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVP 669

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +    
Sbjct: 670  TTVLAQQHYTNFKERFQNFAVNIDVLSRFKSKKEQTETLEKLKNGQVDILIGTHRVLSKD 729

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730  VVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIE 789

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERF 507
              P  R P++T ++  N   E + R  V+  +  G + Y++  +++        ++ ++ 
Sbjct: 790  TPPTNRYPVQTYVLEKN---ESVIRDAVLREMERGGQVYYLYNKVD--------TIDQKV 838

Query: 508  NSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            + L E    +S+  +HGRMS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +E
Sbjct: 839  SELQELIPEASVGYVHGRMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFVE 898

Query: 567  NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIA 621
            NA++ GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF IA
Sbjct: 899  NADYMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIA 958

Query: 622  EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
              DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 959  MRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|223940292|ref|ZP_03632150.1| transcription-repair coupling factor [bacterium Ellin514]
 gi|223891059|gb|EEF57562.1| transcription-repair coupling factor [bacterium Ellin514]
          Length = 1212

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 208/377 (55%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T+ Q  AI +   DM +   M R++ GDVG GKT VA+ A   AV  G Q  I+ P 
Sbjct: 635  YEETRDQMRAINETKGDMERPKPMDRLICGDVGFGKTEVAIRAAFKAVMEGKQVAILVPT 694

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LAQQHY   K+   +  + VE+++      +R++ +  +  G   I+IGTH L Q  I
Sbjct: 695  TVLAQQHYNTFKERVADYPMRVELLSRFRSPKNRKRVISELPAGAVDIVIGTHRLIQSDI 754

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L LVI+DE+ RFGV  + K  Q      VL ++ATPIPRTL L   G  D+S I  
Sbjct: 755  NFKDLGLVIIDEEQRFGVLHKEKFKQIRKLVDVLTLSATPIPRTLYLALTGARDMSTIET 814

Query: 451  KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             P  R P++T++   +   I E I+R    L+ G + Y++  ++         ++ ++  
Sbjct: 815  PPQDRLPVETIVAQYDERLIREAIQR---ELNRGGQVYFLHNRV-----GTIDAMAQKLR 866

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            +L  H  + I + HG+M   D E VM +F NG   +L++TT+IE G+D+ +A+ +II+ A
Sbjct: 867  TLVPH--ARIVVGHGQMKPDDLEEVMTAFINGEADVLLSTTIIESGLDIPNANTMIIDRA 924

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEE 623
            + FGL+ L+QLRGRVGR +  +   LL   H  L  ++  R+S LK       GF IA  
Sbjct: 925  DRFGLSDLYQLRGRVGRYKHQAYAYLLLPRHAGLLADARKRISALKQYSTLGSGFKIAMR 984

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 985  DLEIRGAGNMLGPEQSG 1001


>gi|295676504|ref|YP_003605028.1| transcription-repair coupling factor [Burkholderia sp. CCGE1002]
 gi|295436347|gb|ADG15517.1| transcription-repair coupling factor [Burkholderia sp. CCGE1002]
          Length = 1159

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 163/474 (34%), Positives = 242/474 (51%), Gaps = 21/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++  G    +E K   K   +  F  T  Q 
Sbjct: 554  QWEKAKRKAAQQIRDTAAELLNLYARRAARE--GHAFALEPKDYVKFAESFGFEETPDQA 611

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 612  AAIAAVIGDMTGGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 671

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+++I  G   I+IGTH L    +Q+ +L LV
Sbjct: 672  QTFSDRFSDWPVRIAELSRFKSTKEVNAAIQQINEGSVDIVIGTHKLLSSDVQFKRLGLV 731

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 732  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 791

Query: 459  KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            KT +      D VI E +   L  G + Y++  ++E  +  N R ++E          + 
Sbjct: 792  KTFV--RREEDSVIREAMLRELKRGGQVYFLHNEVETIE--NRRQMLEALVP-----EAR 842

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IA+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  ++ FGLAQLH
Sbjct: 843  IAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRSDKFGLAQLH 902

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR    +   LL H P  L+K +  RL  ++  E+   GF +A  DL+ R  GE
Sbjct: 903  QLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGE 962

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            +LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 963  VLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1012


>gi|159899175|ref|YP_001545422.1| transcription-repair coupling factor [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892214|gb|ABX05294.1| transcription-repair coupling factor [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 1207

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 142/429 (33%), Positives = 231/429 (53%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R+  A  E LA ++  L   +Q  +  G   + +    +++  + P++ T  Q 
Sbjct: 578 DWERAKRKVRADVEELATELLDLYAARQLVE--GFAYSSDTSWQRELEDSFPYTETDDQL 635

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI+++  DM     M R++ GDVG GKT VAL A   AV+ G Q  ++ P  +LAQQH+
Sbjct: 636 RAIEEVKSDMENTRPMDRLICGDVGFGKTEVALRAAFKAVQDGRQVAVLVPTTVLAQQHF 695

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E   +  Q   + +E+++     + ++   ERI  G+  I++GTH +    I + +L LV
Sbjct: 696 ETFSRRMQMFPVRIEMLSRFRSASQQKSITERIVKGEIDIVVGTHRILSSDIHFKQLGLV 755

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L +      VL +TATPIPRT+ +   G  D+S I   P  R PI
Sbjct: 756 IIDEEQRFGVKDKERLKKLRHEIDVLTLTATPIPRTMHMALSGIRDLSVIDTPPDDRMPI 815

Query: 459 KTVIIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           KT + P N   E++ R  ++   G+  +AY++  +++     +  +V  R   L     +
Sbjct: 816 KTYVQPYN---EMLVRDAILRELGRNGQAYFVHNRVQ-----SIYTVANRLQKLVPE--A 865

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I + HG+M +   E V+  F  G   + + TT+IE GIDV  A+ +II++A  +GLAQL
Sbjct: 866 RIGVGHGQMPEKALEKVILQFFEGLFDVFVCTTIIESGIDVPSANTMIIDDATTYGLAQL 925

Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QLRGRVGR  +     + Y+P   + + +  RL  ++   +   GF IA  DL+ R  G
Sbjct: 926 YQLRGRVGRSTQRGYAYMFYNPTKAMGEEAQKRLEAIQEATELGAGFRIAMRDLEIRGTG 985

Query: 632 EILGIKQSG 640
            +LG +QSG
Sbjct: 986 NLLGAEQSG 994


>gi|262047218|ref|ZP_06020176.1| transcription-repair coupling factor [Lactobacillus crispatus
           MV-3A-US]
 gi|312978409|ref|ZP_07790151.1| transcription-repair coupling factor [Lactobacillus crispatus
           CTV-05]
 gi|260572463|gb|EEX29025.1| transcription-repair coupling factor [Lactobacillus crispatus
           MV-3A-US]
 gi|310894752|gb|EFQ43824.1| transcription-repair coupling factor [Lactobacillus crispatus
           CTV-05]
          Length = 1164

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 142/429 (33%), Positives = 233/429 (54%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +K  G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            ++K+I QDM     M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSVKEIKQDMESSKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++        ++ +E + +G+  +++GTH +    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNTTMLSRFQTPVESKEIIEGLKNGKIDLVVGTHRILSQDVKFKNLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +  + +I  V+    L+ +  +G + +++  +I     S+    VE+   L     +
Sbjct: 801 QTYV--MEQIPSVVRDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQELMPQ--A 850

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL
Sbjct: 851 RIAAAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 910

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF IA  DL  R  G
Sbjct: 911 YQLRGRIGRSARLAYAYFLYKPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 971 NMLGAQQHG 979


>gi|206560380|ref|YP_002231144.1| transcription-repair coupling factor [Burkholderia cenocepacia J2315]
 gi|198036421|emb|CAR52317.1| transcription-repair coupling factor [Burkholderia cenocepacia J2315]
          Length = 1164

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 158/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 604  KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQ 663

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F  ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 664  VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 722

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 723  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 782

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
             D S I   P  R  IKT +    R +E + R  ++  L  G + Y++  ++E  E +++
Sbjct: 783  RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 839

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               ++V           + I I HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 840  MLEALVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 890

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
             A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 891  SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEE 950

Query: 617  ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
               GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL
Sbjct: 951  LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDL 1006

Query: 674  TSVRGQSIRILLY 686
            T+    +  I L+
Sbjct: 1007 TAPLAATTEINLH 1019


>gi|119945864|ref|YP_943544.1| transcription-repair coupling factor [Psychromonas ingrahamii 37]
 gi|119864468|gb|ABM03945.1| fused transcription-repair coupling factor and superfamily II
           helicase [Psychromonas ingrahamii 37]
          Length = 1163

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 212/381 (55%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q   IK ++ DM     M R++ GDVG GKT VA+ A   A +   Q  ++
Sbjct: 607 DFPFEETHDQALTIKAVISDMCSSQPMDRLVCGDVGFGKTEVAMRAAFIATDNLRQVALL 666

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHYE  K    +  + +E+++       ++  LE +  G+  I+IGTH L  
Sbjct: 667 VPTTLLAQQHYENFKDRFADWPVRIEVLSRFKTAKQQKLILEEVNQGKIDILIGTHKLLS 726

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
            ++Q+  L L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL ++  G  D+S 
Sbjct: 727 SNVQFADLGLLIIDEEHRFGVRQKEKIKALRAQIDILTLTATPIPRTLNMSMNGMRDLSI 786

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
           I   PA R  +KT +  + + D++I + +   +  G + Y++   +   EK   + + ++
Sbjct: 787 IATPPAKRLAVKTFV--VQKKDQIISDAITREIMRGGQVYFLHNNVATIEKAAHDIQQLI 844

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +         + +A+ HG+M++   E +M  F +    +L+ +T+IE GID+  A+ II
Sbjct: 845 PQ---------AKVAVAHGQMNEHQLEKIMADFYHQRQNVLVCSTIIETGIDIPSANTII 895

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619
           I  A+H GLAQLHQLRGRVGR    +   LL   P  ++K++  RL  ++  +    GF 
Sbjct: 896 INRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPKPKLMTKDAQKRLQAIEALDTLGAGFT 955

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG +QSG
Sbjct: 956 LATHDLEIRGAGELLGDEQSG 976


>gi|149912292|ref|ZP_01900862.1| putative transcription-repair coupling factor [Moritella sp. PE36]
 gi|149804626|gb|EDM64687.1| putative transcription-repair coupling factor [Moritella sp. PE36]
          Length = 1106

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 140/379 (36%), Positives = 215/379 (56%), Gaps = 19/379 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q++AI+D++ DM Q   M R++ GDVG GKT VA+ A   A+    Q  ++ P
Sbjct: 604 PFEETDDQKTAIQDVMDDMRQNKTMDRLICGDVGFGKTEVAMRAAFMAMMNDKQVAVLVP 663

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQH+E  K    N  + VE+I+       ++  L  + +G+  ++IGTH L  + 
Sbjct: 664 TTLLAQQHFENFKDRFANWPVRVEVISRFKTAKEQKLILADVKNGKVDLLIGTHKLLSNK 723

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+Y  L L+++DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I 
Sbjct: 724 IEYADLGLLVIDEEHRFGVRQKEKVKALRADIDILTLTATPIPRTLNMAMNGMRDLSIIA 783

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERF 507
             PA R  +KT    + + DE I +  ++  +  G + Y++         +N  S+ +  
Sbjct: 784 TPPAKRLAVKTF---VRQYDENIVKEAIMREIMRGGQVYFL--------HNNVDSIDKTV 832

Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +L E    + I   HG+M++ + ESVM  F +    +L+ TT+IE GID+  A+ II++
Sbjct: 833 EALAELIPEARIVAAHGQMAERELESVMADFYHQRFNVLVCTTIIETGIDIPSANTIIMD 892

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPP-LSKNSYTRLSVLKNTE---DGFLIA 621
            A++ GLAQLHQLRGRVGR    +   LL  HP  +S ++  RL  + + E    GF +A
Sbjct: 893 RADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRISSDAKKRLEAIASLEVLGAGFTLA 952

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  GE+LG +QSG
Sbjct: 953 THDLEIRGAGELLGDEQSG 971


>gi|254247951|ref|ZP_04941272.1| Transcription-repair coupling factor [Burkholderia cenocepacia PC184]
 gi|124872727|gb|EAY64443.1| Transcription-repair coupling factor [Burkholderia cenocepacia PC184]
          Length = 1164

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 158/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 604  KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQ 663

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F  ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 664  VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 722

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 723  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 782

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
             D S I   P  R  IKT +    R +E + R  ++  L  G + Y++  ++E  E +++
Sbjct: 783  RDFSVIATAPQKRLAIKTFV---RREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 839

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               ++V           + I I HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 840  MLEALVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 890

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
             A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 891  SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEE 950

Query: 617  ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
               GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL
Sbjct: 951  LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDL 1006

Query: 674  TSVRGQSIRILLY 686
            T+    +  I L+
Sbjct: 1007 TAPLAATTEINLH 1019


>gi|54293927|ref|YP_126342.1| transcription-repair coupling factor [Legionella pneumophila str.
           Lens]
 gi|53753759|emb|CAH15217.1| Transcription-repair coupling factor [Legionella pneumophila str.
           Lens]
          Length = 1153

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 144/384 (37%), Positives = 202/384 (52%), Gaps = 17/384 (4%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           K     PF+ T  Q  AI+ I++DM     M R++ GDVG GKT VA+ A   AV+ G Q
Sbjct: 595 KFASGFPFTETPDQLQAIEQIIKDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQ 654

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             I+AP  +LA QH+E  +       + +E+++           L  +  G+  I+IGTH
Sbjct: 655 VCILAPTTLLAGQHFESFRDRFAEFPVNIELLSRFRSNKESEAVLAALQSGKVDIVIGTH 714

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            LFQ++I +  L L+I+DE+HRFGV+Q+  +    T   +L MTATPIPRTL +   G  
Sbjct: 715 KLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIR 774

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           DIS I   PA R  IKT     N +      L+ +L  G+  Y            N    
Sbjct: 775 DISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYL----------HNNVQT 824

Query: 504 VERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           +ER     E     + I   HG+M +   E +M  F +    +L+ TT+IE GID+  A+
Sbjct: 825 IERVCQDLEALVPEAKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTAN 884

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED--- 616
            III+ A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RL  + + ED   
Sbjct: 885 TIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGA 944

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF +A  DL+ R  GE+LG +QSG
Sbjct: 945 GFTLATHDLEIRGAGELLGEEQSG 968


>gi|312792831|ref|YP_004025754.1| transcription-repair coupling factor [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179971|gb|ADQ40141.1| transcription-repair coupling factor [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 1141

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 141/429 (32%), Positives = 234/429 (54%), Gaps = 18/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++     E++A  +  L  ++Q  K  G   + +    ++     P++ T+ Q 
Sbjct: 554 EWQKQKQKVRKSLEIVAKDLVELYAKRQLHK--GFKFSKDTLWQKEFEEKFPYTETEGQL 611

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I +DM  +  M RIL GDVG GKT VA+ A   AV    Q  ++ P  ILAQQHY
Sbjct: 612 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 671

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                  ++  + +E+++    +  ++K ++ +  G   I+IGTH L    +++  L L+
Sbjct: 672 MTFSARMKDFPVTIEVLSRLKNETQQKKIIKGLKEGTIDIVIGTHRLLSSDVKFKDLGLL 731

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+H+FGV+ + K+ +  T   VL +TATPIPRTL +  LG  D+S I + P  R P+
Sbjct: 732 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRYPV 791

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++  N   I E I R    +S G + +++  +I++ +E     V  +  +L    + 
Sbjct: 792 QTFVLEYNERIIKEAILR---EISRGGQVFYLYNRIKDIQE-----VAAKLQNLVGD-SI 842

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A  HG+M + + E V+  F  G   +L+ TT+IE G+D+ + + +I+E+++  GLAQL
Sbjct: 843 KVACAHGQMPEEELERVLLDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLAQL 902

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGRVGR   ++     +     LS+ +  RL+ +K  TE   GF IA  DL+ R  G
Sbjct: 903 YQLRGRVGRSNRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRGAG 962

Query: 632 EILGIKQSG 640
            +LG  Q G
Sbjct: 963 SVLGKLQHG 971


>gi|126453184|ref|YP_001066662.1| transcription-repair coupling factor [Burkholderia pseudomallei
            1106a]
 gi|167846208|ref|ZP_02471716.1| transcription-repair coupling factor [Burkholderia pseudomallei
            B7210]
 gi|167911421|ref|ZP_02498512.1| transcription-repair coupling factor [Burkholderia pseudomallei 112]
 gi|242317637|ref|ZP_04816653.1| transcription-repair coupling factor [Burkholderia pseudomallei
            1106b]
 gi|254198050|ref|ZP_04904472.1| transcription-repair coupling factor [Burkholderia pseudomallei S13]
 gi|126226826|gb|ABN90366.1| transcription-repair coupling factor [Burkholderia pseudomallei
            1106a]
 gi|169654791|gb|EDS87484.1| transcription-repair coupling factor [Burkholderia pseudomallei S13]
 gi|242140876|gb|EES27278.1| transcription-repair coupling factor [Burkholderia pseudomallei
            1106b]
          Length = 1189

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 158/433 (36%), Positives = 229/433 (52%), Gaps = 27/433 (6%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 627  KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 686

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F  ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 687  VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 745

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 746  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 805

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
             D S I   P  R  IKT    + R +E + R  ++  L  G + Y++  ++E  E +++
Sbjct: 806  RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 862

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                +V           + I I HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 863  MLEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 913

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
             A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 914  SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 973

Query: 617  ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
               GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL
Sbjct: 974  LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 1029

Query: 674  TSVRGQSIRILLY 686
            T+    +  I L+
Sbjct: 1030 TAPLAATTEINLH 1042


>gi|161524500|ref|YP_001579512.1| transcription-repair coupling factor [Burkholderia multivorans ATCC
            17616]
 gi|221215034|ref|ZP_03588001.1| transcription-repair coupling factor [Burkholderia multivorans CGD1]
 gi|160341929|gb|ABX15015.1| transcription-repair coupling factor [Burkholderia multivorans ATCC
            17616]
 gi|221164970|gb|EED97449.1| transcription-repair coupling factor [Burkholderia multivorans CGD1]
          Length = 1156

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 158/433 (36%), Positives = 229/433 (52%), Gaps = 27/433 (6%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 596  KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 655

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F  ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 656  VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTTK-EVNAAIAQINEGSVDIVIGT 714

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 715  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
             D S I   P  R  IKT    + R +E + R  ++  L  G + Y++  ++E  E +++
Sbjct: 775  RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 831

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                +V           + I I HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 832  MLEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 882

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
             A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 883  SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 942

Query: 617  ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
               GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL
Sbjct: 943  LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 998

Query: 674  TSVRGQSIRILLY 686
            T+    +  I L+
Sbjct: 999  TAPLAATTEINLH 1011


>gi|189350744|ref|YP_001946372.1| transcription-repair coupling factor [Burkholderia multivorans ATCC
            17616]
 gi|189334766|dbj|BAG43836.1| transcription-repair coupling factor [Burkholderia multivorans ATCC
            17616]
          Length = 1185

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 158/433 (36%), Positives = 229/433 (52%), Gaps = 27/433 (6%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 625  KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 684

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F  ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 685  VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTTK-EVNAAIAQINEGSVDIVIGT 743

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 744  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 803

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
             D S I   P  R  IKT    + R +E + R  ++  L  G + Y++  ++E  E +++
Sbjct: 804  RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 860

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                +V           + I I HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 861  MLEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 911

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
             A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 912  SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 971

Query: 617  ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
               GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL
Sbjct: 972  LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 1027

Query: 674  TSVRGQSIRILLY 686
            T+    +  I L+
Sbjct: 1028 TAPLAATTEINLH 1040


>gi|217421496|ref|ZP_03453000.1| transcription-repair coupling factor [Burkholderia pseudomallei 576]
 gi|217395238|gb|EEC35256.1| transcription-repair coupling factor [Burkholderia pseudomallei 576]
          Length = 1189

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 158/433 (36%), Positives = 229/433 (52%), Gaps = 27/433 (6%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 627  KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 686

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F  ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 687  VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 745

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 746  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 805

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
             D S I   P  R  IKT    + R +E + R  ++  L  G + Y++  ++E  E +++
Sbjct: 806  RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 862

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                +V           + I I HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 863  MLEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 913

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
             A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 914  SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 973

Query: 617  ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
               GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL
Sbjct: 974  LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 1029

Query: 674  TSVRGQSIRILLY 686
            T+    +  I L+
Sbjct: 1030 TAPLAATTEINLH 1042


>gi|148360394|ref|YP_001251601.1| transcription repair coupling factor [Legionella pneumophila str.
           Corby]
 gi|296106539|ref|YP_003618239.1| transcription-repair coupling factor (superfamily II helicase)
           [Legionella pneumophila 2300/99 Alcoy]
 gi|148282167|gb|ABQ56255.1| transcription repair coupling factor [Legionella pneumophila str.
           Corby]
 gi|295648440|gb|ADG24287.1| transcription-repair coupling factor (superfamily II helicase)
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 1153

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 144/384 (37%), Positives = 202/384 (52%), Gaps = 17/384 (4%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           K     PF+ T  Q  AI+ I++DM     M R++ GDVG GKT VA+ A   AV+ G Q
Sbjct: 595 KFASGFPFTETPDQLQAIEQIIRDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQ 654

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             I+AP  +LA QH+E  +       + +E+++           L  +  G+  I+IGTH
Sbjct: 655 VCILAPTTLLAGQHFESFRDRFAEFPVNIELLSRFRSNKESEAVLAALQSGKVDIVIGTH 714

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            LFQ++I +  L L+I+DE+HRFGV+Q+  +    T   +L MTATPIPRTL +   G  
Sbjct: 715 KLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIR 774

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           DIS I   PA R  IKT     N +      L+ +L  G+  Y            N    
Sbjct: 775 DISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYL----------HNNVQT 824

Query: 504 VERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           +ER     E     + I   HG+M +   E +M  F +    +L+ TT+IE GID+  A+
Sbjct: 825 IERVCQDLEALVPEAKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTAN 884

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED--- 616
            III+ A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RL  + + ED   
Sbjct: 885 TIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGA 944

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF +A  DL+ R  GE+LG +QSG
Sbjct: 945 GFTLATHDLEIRGAGELLGEEQSG 968


>gi|297587541|ref|ZP_06946185.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516]
 gi|297574230|gb|EFH92950.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516]
          Length = 1168

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 152/447 (34%), Positives = 243/447 (54%), Gaps = 30/447 (6%)

Query: 229  AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
            + DE+    + L   R + K   G   + + +  ++   + P+  T SQ  +I++I  DM
Sbjct: 586  SVDEMADDLVELYSKRAKLK---GYQFSQDTEWQREFEDSFPYEETDSQVRSIEEIKTDM 642

Query: 289  SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
                 M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQH+  IK+  ++ 
Sbjct: 643  ESDRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVAFLVPTTILAQQHFNTIKERFRDY 702

Query: 349  QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
             I VE+++  +  A +++ ++ +  G   +++GTH +   ++++  L L+++DE+ RFGV
Sbjct: 703  PIRVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGV 762

Query: 409  QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-- 466
            + + KL        VL ++ATPIPRTL +   G  D+S + E P  R PI T +   N  
Sbjct: 763  RHKEKLKSMRENVDVLTLSATPIPRTLQMGLTGIRDMSLLEEPPEDRTPISTYVTEYNPS 822

Query: 467  RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--RSVVERFNSLHEHFTSSIAIIHGR 524
             I + I R    L  G + Y++  +IE+  +  F  + +V   N         IAI HGR
Sbjct: 823  LIRDAIIR---ELDRGGQIYFVYNRIEDIDQMEFKLKELVPELN---------IAIAHGR 870

Query: 525  MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
            M++ + E+VM  F++G   LL+ TT+IE G+D+ + + +II NA+  GL+QL+QL+GR+G
Sbjct: 871  MNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKMGLSQLYQLKGRIG 930

Query: 585  RGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQS 639
            R +  S     Y     L++ S  RL  +K+ TE   GF IA  DL+ R  G +LG  Q 
Sbjct: 931  RSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRDLELRGAGNLLGESQH 990

Query: 640  GMPKFLIAQ--PELHDSLLEIARKDAK 664
            G     IA+   +L+  LLE A ++AK
Sbjct: 991  GH----IAKIGYDLYVKLLEQAVREAK 1013


>gi|284048953|ref|YP_003399292.1| transcription-repair coupling factor [Acidaminococcus fermentans
           DSM 20731]
 gi|283953174|gb|ADB47977.1| transcription-repair coupling factor [Acidaminococcus fermentans
           DSM 20731]
          Length = 1092

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 137/382 (35%), Positives = 216/382 (56%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q  AI +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q  ++
Sbjct: 547 SFPFEETPDQLKAIAEIKADMEKPVPMERLLCGDVGYGKTEVAIRAAFKAVMDGKQVAVL 606

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  +LAQQH     +   +  + VE+++       +R+ +ER+A G+  ++IGTH +  
Sbjct: 607 APTTVLAQQHLLTFTQRMGSFGVRVEMLSRFRTPKQQREIMERVAEGKIDVLIGTHRILN 666

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             ++++ L L+I+DE+ RFGV Q+ K+ Q++    VL ++ATPIPRTL L  +   D+S 
Sbjct: 667 PDVEFHDLGLLIIDEEQRFGVAQKEKIKQRSAGIDVLTLSATPIPRTLHLALVKGRDMSI 726

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503
           I   P  R P++T +   +   + E +ER    +  G + Y++  +IE   +  ++ R +
Sbjct: 727 IESPPEDRLPVETYVAEYDDGMVREALER---EIRRGGRIYYVHNRIEGLSRIAAHLREL 783

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V            +I + HGRM++ + E VM  F  G   +L++TT+IE G+DV  A+ I
Sbjct: 784 VPGI---------TIGLAHGRMTEDELEDVMLGFYQGDFDVLLSTTIIENGLDVPLANTI 834

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618
           II+ AE+FGL+QL+Q+RGRVGR   ++    LY     LS+ +  RL  +++  +   GF
Sbjct: 835 IIDGAENFGLSQLYQMRGRVGRSSRLAYAYFLYKKDRVLSEVAQKRLQAIRDFTELGAGF 894

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL+ R  G +LG +Q G
Sbjct: 895 KIAMRDLEIRGAGNLLGAEQHG 916


>gi|291535574|emb|CBL08686.1| transcription-repair coupling factor [Roseburia intestinalis M50/1]
          Length = 1176

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 143/406 (35%), Positives = 226/406 (55%), Gaps = 15/406 (3%)

Query: 276  SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
             QE AI+   +DM     M R++ GDVG GKT +A+ A   AV+ G Q   + P  ILAQ
Sbjct: 630  DQELAIEATKKDMESTKIMDRLICGDVGYGKTEIAIRAAFKAVQDGKQVAFLVPTTILAQ 689

Query: 336  QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
            QHY    +  ++  + ++++      A ++K +E +  G   IIIGTH L    + Y  L
Sbjct: 690  QHYNNFVQRMKDFPVNIDLLCRFRSSAEQKKTVEALKKGSVDIIIGTHRLLSKDVVYKDL 749

Query: 396  ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
             L+I+DE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  D+S + E P  R
Sbjct: 750  GLLIIDEEQRFGVTHKEKIKQLKTNIDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPMDR 809

Query: 456  KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             PI+T ++  N  + V E +   LS G +AY++  ++ E        V  +   L     
Sbjct: 810  VPIQTYVMEYNE-ELVREAISRELSRGGQAYYVYNRVRE-----IADVAAKIAELVPE-- 861

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            +++A  HG+M + + E++M  F NG   +L++TT+IE G+D+ + + +II +A++ GL+Q
Sbjct: 862  ANVAYAHGQMKETELENIMYRFINGEIDVLVSTTIIETGLDISNVNTMIIHDADNMGLSQ 921

Query: 576  LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
            L+QLRGRVGR    +   L+Y     L + +  RL+ +K  TE   GF IA  DL+ R  
Sbjct: 922  LYQLRGRVGRSNRTAYAFLMYRRDKMLKEIAEKRLAAIKEYTELGSGFKIAMRDLEIRGA 981

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            G +LG +Q G  + +    +L+  +L  A K+AK +   +   TS+
Sbjct: 982  GNLLGAEQHGHMEAV--GYDLYCKMLNEAVKEAKGMDVAESFDTSI 1025


>gi|238917833|ref|YP_002931350.1| transcription-repair coupling factor (superfamily II helicase)
            [Eubacterium eligens ATCC 27750]
 gi|238873193|gb|ACR72903.1| transcription-repair coupling factor (superfamily II helicase)
            [Eubacterium eligens ATCC 27750]
          Length = 1206

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 133/385 (34%), Positives = 213/385 (55%), Gaps = 17/385 (4%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q+     P+  T  Q +AI+D   DM  +  M R++ GDVG GKT +A+ A   AV+ G 
Sbjct: 639  QEFEEMFPYEETTDQLNAIEDTKHDMESRRVMDRLICGDVGYGKTEIAIRAAFKAVQEGK 698

Query: 323  QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            Q   + P  +LA QH+   ++  ++  + V  ++     A  ++ +E +  G   I+IGT
Sbjct: 699  QVAYLVPTTVLASQHFTTFEQRMKDFPVTVAQLSSFRTSAQNKETIEELKKGMVDIVIGT 758

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    + +  L L+I+DE+ RFGV  + K+ +      VL ++ATPIPRTL ++  G 
Sbjct: 759  HRLLSKDVVFKDLGLLIIDEEQRFGVTHKEKIKKLKNNVDVLTLSATPIPRTLHMSLAGI 818

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D+S + E P  R PI+T +   N  DE+I E +   L+   + Y++  ++        R
Sbjct: 819  RDMSVLEEPPVDRVPIQTFVTEHN--DEMIREAITRELARNGQVYYVYNRV--------R 868

Query: 502  SVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            S+ E    + E    +++A  HG+M+  + E +M  F NG   +L++TT+IE G+D+ + 
Sbjct: 869  SIDEAAAHIQELVPDANVAYAHGQMAKRELEKIMCDFVNGEIDVLVSTTIIETGMDISNC 928

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
            + +IIE+A+ FGL+QL+QLRGRVGR    +   LLY     L++ +  RLSV++   D  
Sbjct: 929  NTMIIEDADRFGLSQLYQLRGRVGRSSRTAYAFLLYRRDKVLTEVAEKRLSVIREFADFG 988

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSG 640
             GF IA +DL+ R  G +LG  Q G
Sbjct: 989  SGFKIAMKDLEIRGAGNVLGNSQHG 1013


>gi|218295465|ref|ZP_03496278.1| transcription factor CarD [Thermus aquaticus Y51MC23]
 gi|218244097|gb|EED10623.1| transcription factor CarD [Thermus aquaticus Y51MC23]
          Length = 699

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 140/401 (34%), Positives = 218/401 (54%), Gaps = 15/401 (3%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             P   T  Q  A++++L+D+   + M R++ GDVG GKT VAL A    V  G Q   +
Sbjct: 159 GFPHELTPDQRQALEEVLRDLESPHPMDRLVSGDVGFGKTEVALRAAHRVVGHGAQVAFL 218

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QH    ++  +   + VE+++   P       L+ +  G+  I+IGTH L Q
Sbjct: 219 VPTTLLAEQHGRTFRERFRGLPVRVEVLSRFTPPKEEGAILKDLKEGRVDIVIGTHRLLQ 278

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             + +  L L+IVDE+HRFGV Q+ ++ +       L ++ATPIPRTL    +G  D+S 
Sbjct: 279 PDVAFKDLGLLIVDEEHRFGVAQKERIRELKENVDTLYLSATPIPRTLYSALVGLKDLSS 338

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I   P GRKPIKT + P + +  V E +   L  G KA+++  ++         S+  R 
Sbjct: 339 IKTPPPGRKPIKTFLAPFDPL-LVREAILNELERGGKAFYVHHRVA--------SIEARR 389

Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             L +    + I ++HG+M +   E  M  F  G   +L+ATT+IE G+DV +A  I+IE
Sbjct: 390 RYLEDLVPEARIGVVHGQMPEGLIEETMMLFAEGAYDVLLATTIIEAGLDVPEAGTILIE 449

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEE 623
            A+  GLA L+QLRGRVGR ++ +   L + P L++ +  RL  + +  D   G L+AE+
Sbjct: 450 RADLLGLATLYQLRGRVGRRDQEAYAYLFHPPRLTEAAEKRLHAIADLSDLGSGHLLAEK 509

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           D++ R  G +LG +Q G  + L    E++  LLE A +  K
Sbjct: 510 DMEIRGVGNLLGPEQHGHIRALSL--EVYTELLEEALRKLK 548


>gi|301165394|emb|CBW24965.1| transcription-repair coupling factor [Bacteriovorax marinus SJ]
          Length = 1165

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 219/380 (57%), Gaps = 19/380 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T  Q +A+ ++++ M +   M  ++ GDVG GKT VA+ A   AV    Q  ++ 
Sbjct: 617 FPFQETPDQINAVNEVIESMQKPIAMDHLVCGDVGFGKTEVAMRAAFKAVLDKKQVCVLV 676

Query: 329 PIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P  +LA QHY  F+K++++   + +E ++        ++ +E++  G+  I+IGTH L  
Sbjct: 677 PTTVLALQHYNSFVKRFSK-FPVEIEFLSRFKTAKQTKEVIEKLKDGKIDILIGTHKLLS 735

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D I+Y  L LVIVDE+ RFGV  + KL         L +TATPIPRTL L+ LG  ++S 
Sbjct: 736 DKIKYQDLGLVIVDEEQRFGVAHKEKLKLLKANVDFLTLTATPIPRTLQLSFLGIREMSL 795

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I   P  R+ IK+ +I  + +  +   +K  L+ G + + +  ++         S ++ F
Sbjct: 796 IQTAPPRRQSIKSYLIKEDDL-TLQTAIKKELNRGGQVFIVHNKV---------SDIDHF 845

Query: 508 NSLHEHFTSSIAII--HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           ++  +       I+  HG+MS+ + E  M +F NGT ++LI+TT+IE GID+ +A+ +II
Sbjct: 846 SNYIQELVPEAKIVYAHGQMSEKELEEKMSAFYNGTYQILISTTIIESGIDIPNANTMII 905

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLI 620
           + A+++GLAQLHQLRGR+GR ++ +    +   H P+S+ +  RL  L+   D   GF I
Sbjct: 906 DRADNYGLAQLHQLRGRIGRSDKKAYAYFVIPKHKPISEIAQRRLKALQTYADMGSGFNI 965

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  G+ILG +QSG
Sbjct: 966 ATCDLEIRGAGDILGAEQSG 985


>gi|242068687|ref|XP_002449620.1| hypothetical protein SORBIDRAFT_05g020300 [Sorghum bicolor]
 gi|241935463|gb|EES08608.1| hypothetical protein SORBIDRAFT_05g020300 [Sorghum bicolor]
          Length = 834

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 217/379 (57%), Gaps = 17/379 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           P+ PT  Q  A  D+ +D++++   M R++ GDVG GKT VA+ A+   V AG QA+++A
Sbjct: 278 PYEPTPDQCQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVVSAGFQAMVLA 337

Query: 329 PIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P  ILA+QHY+ + +++    +I + I +G   +  + + + +I +G  HII+GTHAL  
Sbjct: 338 PTIILAKQHYDVMTERFANYPEIKIAIFSGAQSKEEKDELITKIKNGDLHIIVGTHALLT 397

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + + Y  L L++VDE+ +FGVQQ+ K+    ++  VL ++ATPIPRTL L   G  D S 
Sbjct: 398 ERMVYSNLGLLVVDEEQKFGVQQKEKIASYKSSIDVLTLSATPIPRTLYLALTGFRDASL 457

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           ++  P  R  +KT +   ++ +  +  +K  L  G + +++ P+I        +++ +  
Sbjct: 458 MSTPPPERVAVKTYVSAFSK-ERALSAIKFELQRGGQVFYVVPRI--------KAIDDVL 508

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             L +      IA+ HG+      +  M+ F +G  K+L+ T +IE GID+ +A+ +I++
Sbjct: 509 QFLKDSLPDVPIAVAHGKKMSKSIQLAMEDFASGEVKILVCTHIIESGIDIANANTMIVQ 568

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621
            AE +GLAQL+QLRGRVGR        L Y     LS+ +  RL  ++   +   GF +A
Sbjct: 569 FAELYGLAQLYQLRGRVGRSGREGFAYLFYTDKSLLSRVATDRLGAIEEHSELGQGFHVA 628

Query: 622 EEDLKQRKEGEILGIKQSG 640
           E+D+  R  G + G +QSG
Sbjct: 629 EKDMGIRGFGSLFGDQQSG 647


>gi|221198238|ref|ZP_03571284.1| transcription-repair coupling factor [Burkholderia multivorans CGD2M]
 gi|221209180|ref|ZP_03582172.1| transcription-repair coupling factor [Burkholderia multivorans CGD2]
 gi|221170918|gb|EEE03373.1| transcription-repair coupling factor [Burkholderia multivorans CGD2]
 gi|221182170|gb|EEE14571.1| transcription-repair coupling factor [Burkholderia multivorans CGD2M]
          Length = 1156

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 158/433 (36%), Positives = 229/433 (52%), Gaps = 27/433 (6%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 596  KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 655

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F  ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 656  VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTTK-EVNAAIAQINEGSVDIVIGT 714

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 715  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
             D S I   P  R  IKT    + R +E + R  ++  L  G + Y++  ++E  E +++
Sbjct: 775  RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 831

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                +V           + I I HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 832  MLEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 882

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
             A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 883  SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 942

Query: 617  ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
               GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL
Sbjct: 943  LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 998

Query: 674  TSVRGQSIRILLY 686
            T+    +  I L+
Sbjct: 999  TAPLAATTEINLH 1011


>gi|53719711|ref|YP_108697.1| transcription-repair coupling factor [Burkholderia pseudomallei
            K96243]
 gi|76810493|ref|YP_333905.1| transcription-repair coupling factor [Burkholderia pseudomallei
            1710b]
 gi|126438362|ref|YP_001059391.1| transcription-repair coupling factor [Burkholderia pseudomallei 668]
 gi|134277056|ref|ZP_01763771.1| transcription-repair coupling factor [Burkholderia pseudomallei 305]
 gi|167720072|ref|ZP_02403308.1| transcription-repair coupling factor [Burkholderia pseudomallei DM98]
 gi|167739084|ref|ZP_02411858.1| transcription-repair coupling factor [Burkholderia pseudomallei 14]
 gi|167824679|ref|ZP_02456150.1| transcription-repair coupling factor [Burkholderia pseudomallei 9]
 gi|167903188|ref|ZP_02490393.1| transcription-repair coupling factor [Burkholderia pseudomallei NCTC
            13177]
 gi|226196247|ref|ZP_03791831.1| transcription-repair coupling factor [Burkholderia pseudomallei
            Pakistan 9]
 gi|237812718|ref|YP_002897169.1| transcription-repair coupling factor [Burkholderia pseudomallei
            MSHR346]
 gi|254179398|ref|ZP_04885997.1| transcription-repair coupling factor [Burkholderia pseudomallei 1655]
 gi|254189215|ref|ZP_04895726.1| transcription-repair coupling factor [Burkholderia pseudomallei
            Pasteur 52237]
 gi|254258111|ref|ZP_04949165.1| transcription-repair coupling factor [Burkholderia pseudomallei
            1710a]
 gi|52210125|emb|CAH36103.1| transcription-repair coupling factor [Burkholderia pseudomallei
            K96243]
 gi|76579946|gb|ABA49421.1| transcription-repair coupling factor [Burkholderia pseudomallei
            1710b]
 gi|126217855|gb|ABN81361.1| transcription-repair coupling factor [Burkholderia pseudomallei 668]
 gi|134250706|gb|EBA50785.1| transcription-repair coupling factor [Burkholderia pseudomallei 305]
 gi|157936894|gb|EDO92564.1| transcription-repair coupling factor [Burkholderia pseudomallei
            Pasteur 52237]
 gi|184209938|gb|EDU06981.1| transcription-repair coupling factor [Burkholderia pseudomallei 1655]
 gi|225931703|gb|EEH27706.1| transcription-repair coupling factor [Burkholderia pseudomallei
            Pakistan 9]
 gi|237506667|gb|ACQ98985.1| transcription-repair coupling factor [Burkholderia pseudomallei
            MSHR346]
 gi|254216800|gb|EET06184.1| transcription-repair coupling factor [Burkholderia pseudomallei
            1710a]
          Length = 1189

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 158/433 (36%), Positives = 229/433 (52%), Gaps = 27/433 (6%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 627  KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 686

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F  ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 687  VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 745

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 746  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 805

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
             D S I   P  R  IKT    + R +E + R  ++  L  G + Y++  ++E  E +++
Sbjct: 806  RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 862

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                +V           + I I HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 863  MLEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 913

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
             A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 914  SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 973

Query: 617  ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
               GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL
Sbjct: 974  LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 1029

Query: 674  TSVRGQSIRILLY 686
            T+    +  I L+
Sbjct: 1030 TAPLAATTEINLH 1042


>gi|295689522|ref|YP_003593215.1| transcription-repair coupling factor [Caulobacter segnis ATCC 21756]
 gi|295431425|gb|ADG10597.1| transcription-repair coupling factor [Caulobacter segnis ATCC 21756]
          Length = 1155

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 150/430 (34%), Positives = 233/430 (54%), Gaps = 36/430 (8%)

Query: 269  IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             P+  T  Q SAI D+L+D+S    M R++ GDVG GKT VAL A      +G Q  I+ 
Sbjct: 603  FPYEETDDQLSAIHDVLEDLSSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVC 662

Query: 329  PIGILAQQHYEFIKKYTQNTQIIV----EIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            P  +LA+QHY+  K   Q   + V     ++TG      R    E +A+GQ  I++GTHA
Sbjct: 663  PTTLLARQHYKTFKDRFQGWPVKVTRLSRLVTGKEAAETR----EGLANGQFEIVVGTHA 718

Query: 385  LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
            +    + +  L LVIVDE+  FGV+ + KL +     H+L +TATPIPRTL +   G  +
Sbjct: 719  ILSKQVSFKDLGLVIVDEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIRE 778

Query: 445  ISKITEKPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
            +S I   P  R  ++T I P + +   E + R K     G ++Y++ P+I++ ++     
Sbjct: 779  MSIIATPPVDRLAVRTYISPFDPVTLREALLREKY---RGGQSYYVVPRIKDLED----- 830

Query: 503  VVERFNSLHEHFTSSIAII-HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             +E+F  L         ++ HG+MS    E VM +F  G   +L+ATT++E G+D+  A+
Sbjct: 831  -IEKF--LRTQVPEVKYVVGHGQMSATQLEDVMTAFYEGQYDVLLATTIVESGLDIPSAN 887

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED--- 616
             +I+  A+ FGLAQL+Q+RGRVGR +  +   L       L+ ++  RL VL++ +    
Sbjct: 888  TLIVHRADMFGLAQLYQIRGRVGRSKARAYAYLTTPVEKSLTLSAEKRLQVLQSLDSLGA 947

Query: 617  GFLIAEEDLKQRKEGEILGIKQSGMPKFL---IAQPELHDSLLEIARKDAKHILTQDPDL 673
            GF +A  DL QR  G +LG +QSG  K +   + Q  L D++ E+ ++  +  L +D   
Sbjct: 948  GFQLASHDLDQRGGGNLLGDEQSGHIKEIGVELYQQMLEDAVAELKQRQGQEALLED--- 1004

Query: 674  TSVRGQSIRI 683
               RG S +I
Sbjct: 1005 ---RGWSPQI 1011


>gi|34541397|ref|NP_905876.1| transcription-repair coupling factor [Porphyromonas gingivalis W83]
 gi|34397714|gb|AAQ66775.1| transcription-repair coupling factor [Porphyromonas gingivalis W83]
          Length = 1122

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 143/408 (35%), Positives = 220/408 (53%), Gaps = 15/408 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q K+E G   + +  +  ++  +  +  T  QE A  ++  DM     M R++ 
Sbjct: 523 LIRLYAQRKEERGFAFSPDSYLQHELEASFLYEDTPDQERATAEVKADMESDRPMDRLIC 582

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   A   G Q  I+ P  +LA QHY+  +   QN  + +E I+   
Sbjct: 583 GDVGFGKTEVAVRAAFKAATDGKQVAILVPTTVLAYQHYQTFRDRLQNFPVRIEYISRAR 642

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                +  L  +A G+  IIIGTH L  + I+++ L L+++DE+ +FGV  + KL +   
Sbjct: 643 SAKDIKAILHDLAEGRIDIIIGTHRLVSNDIRFHDLGLLVIDEEQKFGVAVKEKLRKLQV 702

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L M+ATPIPRTL  + +G  D+S I   P  R P+ T +   +  D V E +   +
Sbjct: 703 NVDTLTMSATPIPRTLQFSLMGARDLSNINTPPPNRYPVATELARFS-PDIVREAVNFEM 761

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S   + + +  +I+  +E     +V+R     E   + +A+ HGRMS  + E ++  F +
Sbjct: 762 SRNGQVFIVHNRIDNIEE--IAGIVQR-----EVPDARVAVGHGRMSPTELERLILDFVH 814

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+ATT+IE GIDV +A+ III++A  +GL++LHQLRGRVGR    + C LL  PP
Sbjct: 815 YEYDVLVATTIIENGIDVPNANTIIIDDAHRYGLSELHQLRGRVGRSNRKAFCYLL-SPP 873

Query: 600 ---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
              LS +S  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 874 LSVLSDDSRRRLQAIENFSDLGSGIRIALQDLDIRGAGNVLGAEQSGF 921


>gi|91783503|ref|YP_558709.1| transcription-repair coupling factor [Burkholderia xenovorans LB400]
 gi|91687457|gb|ABE30657.1| transcription-repair coupling factor [Burkholderia xenovorans LB400]
          Length = 1160

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 228/441 (51%), Gaps = 19/441 (4%)

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            G    +E K   K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL
Sbjct: 585  GHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVAL 644

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A   AV  G Q  +++P  +LA+QH +       +  + +  ++          A+ +I
Sbjct: 645  RAAFIAVMGGKQVALLSPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIHQI 704

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
              G   I+IGTH L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPI
Sbjct: 705  NEGTVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPI 764

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICP 490
            PRTL +   G  D S I   P  R  IKT +      D VI E +   L  G + Y++  
Sbjct: 765  PRTLGMALEGLRDFSVIATAPQKRLAIKTFVR--REEDSVIREAMLRELKRGGQVYFLHN 822

Query: 491  QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            ++E  +  N R ++E          + IA+ HG+M + + E VM  F      +L+ TT+
Sbjct: 823  EVETIE--NRRQMLEALVP-----EARIAVAHGQMHERELERVMRDFVAQRANVLLCTTI 875

Query: 551  IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL 608
            IE GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL
Sbjct: 876  IETGIDVPSANTILIHRADKFGLAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRL 935

Query: 609  SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
              ++  E+   GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K 
Sbjct: 936  EAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKE 993

Query: 666  ILTQDPDLTSVRGQSIRILLY 686
               ++PDLT+    +  I L+
Sbjct: 994  --GKEPDLTAPLAATTEINLH 1012


>gi|299066652|emb|CBJ37845.1| transcription-repair ATP-dependent coupling factor, helicase
           [Ralstonia solanacearum CMR15]
          Length = 1143

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 147/431 (34%), Positives = 222/431 (51%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R+        A ++  L  R+  ++    P+       +    +  F  T  Q 
Sbjct: 550 QWDKAKRKAAQQIRDTAAELLNLYARRALRQGFAFPLAPNDY--ETFAESFGFDETPDQA 607

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QHY
Sbjct: 608 AAITAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHY 667

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +     +  + +  I+    +     A+E I  G   I+IGTH L    +++ +L LV
Sbjct: 668 QTLADRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVKFNRLGLV 727

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+Q+  L        +L +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 728 IIDEEHRFGVRQKETLKTLRAEVDILTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 787

Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           KT +    R ++ + R  ++  L  G + Y++  ++E  E K +   ++V          
Sbjct: 788 KTFV---RREEDGVLREAILRELKRGGQVYFLHNEVETIENKRAKLEALVPE-------- 836

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + +A+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLA
Sbjct: 837 -ARVAVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLA 895

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QLHQLRGRVGR    +   LL H    L+K +  RL  ++  E+   GF +A  DL+ R 
Sbjct: 896 QLHQLRGRVGRSHHQAYAYLLVHDADGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRG 955

Query: 630 EGEILGIKQSG 640
            GE+LG KQSG
Sbjct: 956 AGEVLGDKQSG 966


>gi|145589112|ref|YP_001155709.1| transcription-repair coupling factor [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047518|gb|ABP34145.1| transcription-repair coupling factor [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 1180

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 148/378 (39%), Positives = 206/378 (54%), Gaps = 19/378 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  I+AP 
Sbjct: 622 FEETPDQANAIAAVIGDMTSGTPMDRLVCGDVGFGKTEVALRASFVAVMGGKQVAILAPT 681

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH    K    +  + +  ++          ALE IA G A IIIGTH L     
Sbjct: 682 TLLAEQHVATWKDRFADWPVRIVELSRFKTTKEINAALEAIAKGDADIIIGTHKLLSKET 741

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           Q+  L LVIVDE+HRFGV+Q+  L        +L +TATPIPRTL +   G  ++S I  
Sbjct: 742 QFANLGLVIVDEEHRFGVRQKDALKVLRAEVDILTLTATPIPRTLGMAMEGLRELSIIAT 801

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R  IKT    + R  + + R  V+  +  G + Y++  ++E        ++  R +
Sbjct: 802 APQKRLAIKTF---VRREGDGVIREAVLREIKRGGQVYFLHNEVE--------TIQNRKH 850

Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +L E    + I++ HG+M + + ESVM  F      +L+ TT+IE GIDV  A+ II+  
Sbjct: 851 ALQELIPEARISVAHGQMHERELESVMREFVTQRTNILLCTTIIETGIDVPTANTIIMHR 910

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A+ FGLAQLHQLRGRVGR    +   LL   P  LSK +  RL+ ++  E+   GF +A 
Sbjct: 911 ADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDPEALSKQAQLRLNAIQAMEELGSGFYLAM 970

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  GE+LG KQSG
Sbjct: 971 HDLEIRGAGEVLGDKQSG 988


>gi|88800098|ref|ZP_01115668.1| transcription-repair coupling protein Mfd [Reinekea sp. MED297]
 gi|88777224|gb|EAR08429.1| transcription-repair coupling protein Mfd [Reinekea sp. MED297]
          Length = 1151

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 140/416 (33%), Positives = 223/416 (53%), Gaps = 25/416 (6%)

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A ++  +  R++ +   G P +      Q+      F  T  Q  AI+ +L D+ Q   M
Sbjct: 570 AAELLDIYARREAQSGFGFPFD--STEYQQFAAGFGFEETDDQAQAIRKVLNDLRQPRPM 627

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VAL A   A  +G Q  ++ P  +LAQQH+E  +    +  I +E+
Sbjct: 628 DRLICGDVGFGKTEVALRAAFIAASSGKQVAVLVPTTLLAQQHFENFQDRFADWPINIEV 687

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           ++        +  ++ +A G+  I++GTH L Q S+++  L L+IVDE+HRFGV Q+  +
Sbjct: 688 LSRFNSSKKTQSIIDGLADGKVDIVVGTHKLLQKSVKFKDLGLLIVDEEHRFGVGQKETI 747

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                   +L +TATPIPRT+ ++  G  D+S I   PA R  +KT +    + D +I+ 
Sbjct: 748 KALRANVDILALTATPIPRTMNMSMSGVRDLSIIATPPAKRLSVKTFV--REKDDALIK- 804

Query: 475 LKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDID 529
            + VL E   G + Y++  ++         S +E+  +        + + + HG+M +  
Sbjct: 805 -EAVLREILRGGQVYYLHNEV---------STIEKTQAFLTELIPEARVVVAHGQMPERQ 854

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
            E +M  F +    +L+ TT+IE GIDV  A+ I+IE A+ FGLAQLHQLRGRVGR    
Sbjct: 855 LERIMSDFYHKRFNVLLCTTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRSHHQ 914

Query: 590 SSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           +   LL      L+K++  RL  + +++    GF +A  DL+ R  GE+LG +QSG
Sbjct: 915 AYAYLLTPGWKSLTKDAQKRLEAIADSQHLGAGFTLATHDLEIRGAGELLGDEQSG 970


>gi|54296975|ref|YP_123344.1| transcription-repair coupling factor [Legionella pneumophila str.
           Paris]
 gi|53750760|emb|CAH12167.1| Transcription-repair coupling factor [Legionella pneumophila str.
           Paris]
          Length = 1153

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 144/384 (37%), Positives = 202/384 (52%), Gaps = 17/384 (4%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           K     PF+ T  Q  AI+ I++DM     M R++ GDVG GKT VA+ A   AV+ G Q
Sbjct: 595 KFASGFPFTETPDQLQAIEQIIRDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQ 654

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             I+AP  +LA QH+E  +       + +E+++           L  +  G+  I+IGTH
Sbjct: 655 VCILAPTTLLAGQHFESFRDRFAEFPVNIELLSRFRSNKESEAVLAALQSGKVDIVIGTH 714

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            LFQ++I +  L L+I+DE+HRFGV+Q+  +    T   +L MTATPIPRTL +   G  
Sbjct: 715 KLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIR 774

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           DIS I   PA R  IKT     N +      L+ +L  G+  Y            N    
Sbjct: 775 DISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYL----------HNNVQT 824

Query: 504 VERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           +ER     E     + I   HG+M +   E +M  F +    +L+ TT+IE GID+  A+
Sbjct: 825 IERVCQDLEALVPEAKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTAN 884

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED--- 616
            III+ A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RL  + + ED   
Sbjct: 885 TIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGA 944

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF +A  DL+ R  GE+LG +QSG
Sbjct: 945 GFTLATHDLEIRGAGELLGEEQSG 968


>gi|290889683|ref|ZP_06552772.1| hypothetical protein AWRIB429_0162 [Oenococcus oeni AWRIB429]
 gi|290480680|gb|EFD89315.1| hypothetical protein AWRIB429_0162 [Oenococcus oeni AWRIB429]
          Length = 1188

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 140/434 (32%), Positives = 236/434 (54%), Gaps = 26/434 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R   A  E +A ++  L  +++   E+G   +V+ +  Q+      +  T  Q 
Sbjct: 583  DWAKTKRRVTAKVEDIADELIALYSKRE--GEVGYAFSVDDQRQQEFDDGFAYPETVDQL 640

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +IK+I  DM  K  M R+L GDVG GKT VA  A   A+E   Q   + P  IL+QQHY
Sbjct: 641  RSIKEIKSDMENKKPMDRLLVGDVGFGKTEVAFRAAFKAIEDHKQVAFLTPTTILSQQHY 700

Query: 339  EF-IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            +  I++++   +I + +++        ++ ++++   Q  ++IGTH L    + +  L L
Sbjct: 701  QTAIERFSDFPEIKIAMLSRFNTAGQNKEVIKKLKAHQLDMVIGTHRLLSKDVAFDDLGL 760

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +I+DE+ RFGV+ + K+ Q      VL +TATPIPRTL +  +G  D+S +   PA R P
Sbjct: 761  LIIDEEQRFGVKHKEKIKQLRANVDVLTLTATPIPRTLNMALVGARDLSVLETPPANRFP 820

Query: 458  IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEH 513
            I+T ++  N   I + IE+    LS G + +++  +++  E+     + +V   N     
Sbjct: 821  IQTYVLEENWPVIADAIEK---ELSRGGQTFFLHNRVQDIERTVGEIQRIVPDAN----- 872

Query: 514  FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +  IHG+M++   E V+  F NG   +L+ TT+IE G+D+ +A+ +I+EN+E FGL
Sbjct: 873  ----VGYIHGQMNETQLEDVLMDFLNGIYDVLVTTTIIETGVDIPNANTLIVENSERFGL 928

Query: 574  AQLHQLRGRVGRGEEISSCILLY---HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQ 627
            +QL+QLRGR+GR   ++     Y     P ++++  RL  +++ TE   GF +A  DL  
Sbjct: 929  SQLYQLRGRIGRSNRLAYAYFTYPGDRQP-TEDAQKRLEAIRDFTELGSGFKLAMRDLSI 987

Query: 628  RKEGEILGIKQSGM 641
            R  G++LG +Q G 
Sbjct: 988  RGAGDLLGKQQHGF 1001


>gi|221142305|ref|ZP_03566798.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|304380521|ref|ZP_07363197.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|269940074|emb|CBI48450.1| putative transcription-repair coupling factor [Staphylococcus
           aureus subsp. aureus TW20]
 gi|302750394|gb|ADL64571.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340925|gb|EFM06849.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|329313222|gb|AEB87635.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 1168

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 211/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 614 DFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 673

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  + +++++        ++  E +  G   I++GTH L  
Sbjct: 674 VPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLS 733

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 734 KDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSV 793

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++  N   I E +ER    LS   +  ++  +++        S+ E
Sbjct: 794 IETPPENRFPVQTYVLEQNMSFIKEALER---ELSRDGQVLYLYNKVQ--------SIYE 842

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++IA+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    L++ +  RL  +K  TE   GF
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPANKVLTETAEDRLQAIKEFTELGSGF 961

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 962 KIAMRDLNIRGAGNLLGKQQHG 983


>gi|90408104|ref|ZP_01216274.1| transcription-repair coupling factor [Psychromonas sp. CNPT3]
 gi|90310790|gb|EAS38905.1| transcription-repair coupling factor [Psychromonas sp. CNPT3]
          Length = 1158

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 210/379 (55%), Gaps = 19/379 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q +AI  +L DM  +  M R++ GDVG GKT VA+ A   AV+   Q  I+ P
Sbjct: 608 PFEETPDQSNAINAVLNDMCSRQPMDRLICGDVGFGKTEVAMRATFLAVDNTRQVAILVP 667

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHYE  K    +  + VE+++       +++ L  +  G+  I+IGTH L   +
Sbjct: 668 TTLLAQQHYENFKDRFASWPVRVEVLSRFKSAKEQKQILLELQEGKIDILIGTHKLLSST 727

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y  L L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL ++  G  D+S I 
Sbjct: 728 VVYADLGLLIIDEEHRFGVRQKEKIKALRAQIDILTLTATPIPRTLNMSMNGMRDLSIIA 787

Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVER 506
             P+ R  +KT +    + D +I + +   +  G + Y++   +E   K  ++  ++V  
Sbjct: 788 TPPSKRLAVKTFV--EQKTDALISDAITREIMRGGQVYFLHNNVETINKAAADIEALVP- 844

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                   ++ +++ HG+M++   E +M  F +    +L+ TT+IE GID+  A+ III 
Sbjct: 845 --------SAKVSVAHGQMNEHQLERIMSDFYHQRQNVLVCTTIIETGIDIPSANTIIIN 896

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRL---SVLKNTEDGFLIA 621
            A+H GLAQLHQLRGRVGR    +   LL      +SK++  RL   S L     GF +A
Sbjct: 897 RADHLGLAQLHQLRGRVGRSHHQAYAYLLTPTRKLMSKDAKKRLDAISSLNTLGAGFTLA 956

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  GE+LG +QSG
Sbjct: 957 THDLEIRGAGELLGDEQSG 975


>gi|167816296|ref|ZP_02447976.1| transcription-repair coupling factor [Burkholderia pseudomallei 91]
          Length = 1175

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 158/433 (36%), Positives = 229/433 (52%), Gaps = 27/433 (6%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 613  KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 672

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F  ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 673  VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 731

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 732  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 791

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
             D S I   P  R  IKT    + R +E + R  ++  L  G + Y++  ++E  E +++
Sbjct: 792  RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 848

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                +V           + I I HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 849  MLEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 899

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
             A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 900  SANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 959

Query: 617  ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
               GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL
Sbjct: 960  LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDL 1015

Query: 674  TSVRGQSIRILLY 686
            T+    +  I L+
Sbjct: 1016 TAPLAATTEINLH 1028


>gi|162450905|ref|YP_001613272.1| transcription-repair coupling factor [Sorangium cellulosum 'So ce
            56']
 gi|161161487|emb|CAN92792.1| transcription-repair coupling factor [Sorangium cellulosum 'So ce
            56']
          Length = 1271

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 136/381 (35%), Positives = 208/381 (54%), Gaps = 19/381 (4%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
              PF  T  Q  AI ++  D+     M R++ GDVG GKT VA+ A   A  AG Q  ++
Sbjct: 718  TFPFDETPDQARAITEVTADLESGRPMDRLVCGDVGFGKTEVAIRAAFRAANAGRQVAVL 777

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +LAQQHY   +    +  I V +++    +  + +    +  G   ++IGTH L  
Sbjct: 778  CPTTVLAQQHYLSFRSRMASYPIEVRVMSRFQSKQEQDEVSRGLRDGSVDVVIGTHRLLS 837

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              + + +L L++VDE+ RFGV  + ++    T   VL ++ATPIPRTL +   G  D+S 
Sbjct: 838  KDVHFKRLGLLVVDEEQRFGVTHKERIKALKTNVDVLTLSATPIPRTLQMAVSGLRDMSI 897

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVE 505
            IT  P  R+ I+TV   + R DE + R  V+  L  G + +++  ++E         + E
Sbjct: 898  ITTPPVDRRAIRTV---VTRHDEAVLREAVLRELGRGGQVFYVYNRVE--------GLYE 946

Query: 506  RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            R   L E   S+ I + HG+MS+   E  M  F  G   +L AT +IE G+D+  A+ I+
Sbjct: 947  RAARLAELVPSARICVAHGQMSEQSLEQAMLDFVEGRYDVLCATAIIESGLDIPRANTIL 1006

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL-KNTE--DGFL 619
            I+ A+ FGL+QL+QLRGRVGR +E + C L+  PP  ++  +  R+  L ++TE   GF 
Sbjct: 1007 IDRADMFGLSQLYQLRGRVGRSKERAYCYLIVPPPNAMTDEARARIEALERHTELGSGFQ 1066

Query: 620  IAEEDLKQRKEGEILGIKQSG 640
            IA  DL+ R  G++LG +QSG
Sbjct: 1067 IASLDLELRGSGDLLGAEQSG 1087


>gi|227832736|ref|YP_002834443.1| transcription-repair coupling factor [Corynebacterium aurimucosum
            ATCC 700975]
 gi|262182774|ref|ZP_06042195.1| transcription-repair coupling factor [Corynebacterium aurimucosum
            ATCC 700975]
 gi|227453752|gb|ACP32505.1| transcription-repair coupling factor [Corynebacterium aurimucosum
            ATCC 700975]
          Length = 1212

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 157/523 (30%), Positives = 259/523 (49%), Gaps = 29/523 (5%)

Query: 131  KLKNRI---IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE-ALSRL--PV 184
            K +NR+    +    Y+ H +  +   L  A  ++ +G      + I++E A S+   P 
Sbjct: 497  KRRNRVDPLALKQGDYVVHETHGIGKFLKMAERTVQSGDETSRREYIVLEYAASKRGQPA 556

Query: 185  LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
               W+  D L   S  +  EA  +     K    +W +  ++  A    +AG++  L  +
Sbjct: 557  DQLWVPMDSLDLLSKYTGGEAPTL----SKMGGSDWKNTKKKARAAVREIAGELVELYAK 612

Query: 245  KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            +Q     G     +     ++  N PF  T+ Q  AI  + +DM     M R++ GDVG 
Sbjct: 613  RQAAP--GHQFGPDTPWQAEMEDNFPFVETEDQMLAIDAVKEDMESTVPMDRVVVGDVGY 670

Query: 305  GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
            GKT VA+ A   AV+ G Q  ++ P  +LAQQH +  ++  Q   + +E+++        
Sbjct: 671  GKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHADTFRERMQGFPVDIEVLSRFTSAKES 730

Query: 365  RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
            ++ L  +A G   I+IGTH L Q  +Q+  L L++VDE+ RFGV+ +  +     +  VL
Sbjct: 731  KEILAGLADGSVDIVIGTHRLLQTGVQWKNLGLIVVDEEQRFGVEHKEHIKALKASVDVL 790

Query: 425  LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             M+ATPIPRTL ++  G  ++S I   P  R P+ T +       +V   ++  L    +
Sbjct: 791  TMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYED-KQVAAAIRRELLRDGQ 849

Query: 485  AYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             ++I  ++   EKK    R +V           + I + HG+M++   E  +  F +   
Sbjct: 850  VFFIHNKVADIEKKARELRDLVPE---------ARIVVAHGQMNEDVLERTVQGFWDREF 900

Query: 543  KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPL 600
             +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQLRGRVGR  E      LY     L
Sbjct: 901  DVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATL 960

Query: 601  SKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            ++ SY RL+ +    D   G  +A +DL+ R  G +LG +QSG
Sbjct: 961  TETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSG 1003


>gi|125534627|gb|EAY81175.1| hypothetical protein OsI_36354 [Oryza sativa Indica Group]
          Length = 640

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 136/423 (32%), Positives = 236/423 (55%), Gaps = 23/423 (5%)

Query: 227 RLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +LA  +++   + L L R +Q +     P+ ++   A+      P+ PT  Q  A  D+ 
Sbjct: 45  KLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAE-----FPYEPTPDQNQAFIDVD 99

Query: 286 QDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-KK 343
           +D++++   M R++ GDVG GKT VA+ A+   + AG QA+++AP  ILA+QHY+ + ++
Sbjct: 100 KDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSER 159

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
           ++    I V + +G   +  + + + +I +G  HII+GTHA+  + + Y  L L++VDE+
Sbjct: 160 FSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEE 219

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            +FGVQQ+ K+     +  VL ++ATPIPRTL L   G  D S ++  P  R  ++T + 
Sbjct: 220 QKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVS 279

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522
             ++ +  +  +K  L+ G + +++ P+I        +++ +    L +      +A+ H
Sbjct: 280 GFSK-ERALSAIKFELARGGQVFYVVPRI--------KAIDDVLQFLKDSLPDVPMAVAH 330

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+    + +  M+ F  G  K+L+ T +IE GID+ +A+ ++++ AE FGLAQL+QLRGR
Sbjct: 331 GKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGR 390

Query: 583 VGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIK 637
           VGR        L Y     LSK +  RL  ++   D   GF +AE+D+  R  G + G +
Sbjct: 391 VGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQ 450

Query: 638 QSG 640
           QSG
Sbjct: 451 QSG 453


>gi|89889977|ref|ZP_01201488.1| transcription-repair coupling factor [Flavobacteria bacterium
           BBFL7]
 gi|89518250|gb|EAS20906.1| transcription-repair coupling factor [Flavobacteria bacterium
           BBFL7]
          Length = 1112

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 148/445 (33%), Positives = 239/445 (53%), Gaps = 20/445 (4%)

Query: 237 QIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           QIA  L++   K+    G     +G +  ++  +  +  T  Q +A  D+  DM     M
Sbjct: 512 QIAFDLIQLYAKRRAKKGFQFEPDGYLQNELEASFIYEDTPDQSAATADVKADMESDRPM 571

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VA+ A   A  +G Q  ++ P  ILA QH +  K+   N  + V+ 
Sbjct: 572 DRLVCGDVGFGKTEVAIRAAFKAAVSGKQVAVLVPTTILAFQHAKTFKERLGNLPVTVDY 631

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +        R+  LE +A+GQ  I+IGTH L   SIQ+  L L+I+DE+ +FGV  + KL
Sbjct: 632 LNRFRTAKERKGVLEGLANGQVDIVIGTHQLVSKSIQFKDLGLLIIDEEQKFGVGVKDKL 691

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                    L +TATPIPRTL  + +   D+S I   P  R PI++ +I  +  + + + 
Sbjct: 692 KTLKENIDTLTLTATPIPRTLQFSLMAARDLSVIKTAPPNRHPIESRVIRFSE-ETIRDA 750

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           +   +S G + +++  +IE  KE     +++R  S+ +   + + I HG+M     E +M
Sbjct: 751 VSYEISRGGQVFFVHNRIENIKE--VAGMIQR--SVPD---ARVGIGHGQMDGKKLEELM 803

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            SF NG   +L+ATT+IE G+DV +A+ I I NA +FGL+ LHQ+RGRVGR  + + C  
Sbjct: 804 LSFMNGDFDVLVATTIIESGLDVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYF 863

Query: 595 LYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FL 645
           +  PP   ++ ++  R+  ++   +   GF IA +DL+ R  G+ILG +QSG      F 
Sbjct: 864 I-TPPYDMMTDDARKRIQAVETFSELGSGFNIAMKDLEIRGAGDILGGEQSGFMNEIGFD 922

Query: 646 IAQPELHDSLLEIARKDAKHILTQD 670
             Q  L++++ E+   + K +  +D
Sbjct: 923 TYQKILNEAIEELKENEFKDLYEED 947


>gi|139438721|ref|ZP_01772205.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC
            25986]
 gi|133775801|gb|EBA39621.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC
            25986]
          Length = 1210

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 142/430 (33%), Positives = 227/430 (52%), Gaps = 21/430 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT    +     + LA  +  L  R+     I  P +   +I  ++  + P+  T+ Q 
Sbjct: 604  DWTRATNKARKNAKKLAFDLVDLYTRRSSITGIACPPDTPEQI--EMEESFPYDETRDQL 661

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI DI  DM     M R+L GDVG GKT VAL A    V++G Q +++ P  ILAQQHY
Sbjct: 662  EAIADIKADMEAPKPMDRLLCGDVGFGKTEVALRAAFKCVDSGRQVMVLCPTTILAQQHY 721

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +      + VE+++     A +++AL+  A G   ++IGTH L    +    L +V
Sbjct: 722  ETFFERFAPFGLEVEVLSRFRTPAQQKRALKAFAEGTIDVLIGTHRLLSADVNPKNLGMV 781

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGVQ + +L        VL ++ATPIPRT+ + + G  D+S IT  P GR+P 
Sbjct: 782  IIDEEQRFGVQHKEQLKNLREQIDVLTLSATPIPRTMQMATSGVRDMSLITTPPTGRRP- 840

Query: 459  KTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
              VI+ +   D   V   +++ +  G + Y++  ++        +++ +    +HE    
Sbjct: 841  --VIVHVGEYDPDVVSAAIRLEVGRGGQVYYVSNRV--------KTIDDAVARVHEAAPE 890

Query: 517  S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + + + HG+MS  + E VM  F      +LIATT++E GID   A+ +IIE+++  GLAQ
Sbjct: 891  ARVGVAHGKMSPREVEDVMIEFATKKIDVLIATTIVESGIDNATANTLIIEDSQRLGLAQ 950

Query: 576  LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
            L+QL+GRVGR    +    ++    PL++ +  RL+ L   +D   G  IA  DL+ R  
Sbjct: 951  LYQLKGRVGRSATQAYAYFMFPGELPLTEEATARLTALSEFQDLGSGMRIAMRDLEIRGA 1010

Query: 631  GEILGIKQSG 640
            G ++G +Q G
Sbjct: 1011 GSLMGAEQHG 1020


>gi|257783934|ref|YP_003179151.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469]
 gi|257472441|gb|ACV50560.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469]
          Length = 1147

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 137/394 (34%), Positives = 214/394 (54%), Gaps = 13/394 (3%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   +++    +++  + P+  T  QESA+ DI  DM  +  M R+L GDVG GKT VAL
Sbjct: 587 GYAFSLDTPAQEEMESSFPYQLTPDQESAVADIKLDMEARKPMDRLLCGDVGFGKTEVAL 646

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   A +   Q +I+ P  ILAQQHYE          + V +++  +  A +RKALE  
Sbjct: 647 RAAFKACQDARQVMILCPTTILAQQHYETFFSRFAPFDLKVSVLSRFVTPAQQRKALEGF 706

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A G   +++GTH L    +  + L LVI+DE+ RFGVQ + +L        VL ++ATPI
Sbjct: 707 ADGTIDVLVGTHRLLSADVNPHDLGLVIIDEEQRFGVQHKEQLKNMREQVDVLTLSATPI 766

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRT+ +   G  D+S I   P GRKP++  +   N  D V   ++  L    + Y++  +
Sbjct: 767 PRTMQMAMSGVRDMSLILTPPPGRKPVQVTVGEYN-PDLVSAAIRSELEREGQVYYVSNR 825

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +    E+  R  VE          + + + HG+MS  + E+VM +F+     +L+ATT+I
Sbjct: 826 VTTIDEAVAR--VEEAAP-----EARVGVAHGQMSAREVENVMLAFQEHEIDVLVATTII 878

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLS 609
           E GID    + +IIE+++  GLAQL+QL+GRVGRG + +    ++    PL++ +  RL+
Sbjct: 879 ESGIDNSHTNTLIIEDSQRLGLAQLYQLKGRVGRGRQQAYAYFMFPAELPLTEEATERLT 938

Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            +   +D   G  IA  DL+ R  G ++G +Q G
Sbjct: 939 AINEFQDLGSGMRIAMRDLEIRGAGSLMGAEQHG 972


>gi|299782816|gb|ADJ40814.1| Transcription-repair coupling factor [Lactobacillus fermentum CECT
           5716]
          Length = 1113

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 140/431 (32%), Positives = 231/431 (53%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R   A  E +A  +  L  +++ +K    P +    + +K     P++ TK Q 
Sbjct: 501 EWAKTKRRVAAKIEDIADDLVDLYAKRETEKGFAFPKD--DYLQEKFDDEFPYAETKDQL 558

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM +   M R+L GDVG GKT VAL A+  AV  G Q   + P  ILAQQHY
Sbjct: 559 QSIQEIKADMERPRPMDRLLVGDVGYGKTEVALRAIFKAVAGGKQVAFLVPTTILAQQHY 618

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALER-IAHGQAHIIIGTHALFQDSIQYYKLIL 397
           + +K   +   + + +++     A   K  +R + +G+  I++GTH +    +Q+  L L
Sbjct: 619 DTMKARFEGFPVTIALMS-RFKTAKELKETDRGLLNGEIDIVVGTHRILSKDVQFKDLGL 677

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P GR P
Sbjct: 678 LIVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMMGVRDLSVLETPPTGRYP 737

Query: 458 IKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           I+T ++  N     D ++  ++     G + Y++  ++      +   VV +   L    
Sbjct: 738 IQTYVLEQNGAVIRDGILREMQ----RGGQVYYLHNRVH-----DIERVVAQLAELVPE- 787

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I  IHG+MS+ + E V+  F  G   +L+ T++IE G+D+ + + + +E+A+  GLA
Sbjct: 788 -ARIGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANVNTLFVEDADRLGLA 846

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+Q+RGR+GR   ++    +Y     L++    RL+ +++ TE   GF IA  DL  R 
Sbjct: 847 QLYQIRGRIGRSNRVAYAYFMYQENKVLTEQGEKRLAAIRDFTELGSGFKIAMRDLSIRG 906

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 907 AGNLLGKQQHG 917


>gi|293571071|ref|ZP_06682112.1| transcription-repair coupling factor [Enterococcus faecium E980]
 gi|291608854|gb|EFF38135.1| transcription-repair coupling factor [Enterococcus faecium E980]
          Length = 1173

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 232/431 (53%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   R+  +  E +A  +  L   ++ +K  G     +    ++     P+S T  Q 
Sbjct: 570 EWTKTKRKVSSKIEDIADDLIKLYAARESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 627

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 628 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 688 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 748 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +T ++  N   I E I R    +  G + +++  ++E  E+K    + +V          
Sbjct: 808 QTYVMEKNPGAIREAIHR---EMGRGGQVFYLYNRVETIEQKVEEIQELVPE-------- 856

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I   HG+M++   E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 857 -ARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916 TLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 976 AGNLLGAQQHG 986


>gi|83952089|ref|ZP_00960821.1| transcription-repair coupling factor [Roseovarius nubinhibens ISM]
 gi|83837095|gb|EAP76392.1| transcription-repair coupling factor [Roseovarius nubinhibens ISM]
          Length = 1153

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 137/398 (34%), Positives = 222/398 (55%), Gaps = 19/398 (4%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q  AI D+++D+     M R++ GDVG GKT VA+ A   A  +G Q  ++A
Sbjct: 593 FPYQETDDQLGAISDVMEDLGSGRPMDRLICGDVGFGKTEVAMRAAFVAAMSGQQVAVIA 652

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LA+QHY+   +  +   + V  ++  +      K  E +A G+  I++GTHAL   
Sbjct: 653 PTTLLARQHYQSFAERFRGFPVNVAPLSRFVSAGEATKTREGLARGKVDIVVGTHALLAK 712

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           S+++  L L+I+DE+ RFGV  + +L Q  +  HVL ++ATPIPRTL L+  G  D+S I
Sbjct: 713 SVRFENLGLLIIDEEQRFGVAHKERLKQMRSDVHVLTLSATPIPRTLQLSLSGVRDLSII 772

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF- 507
              P  R  I+T +   +R+  V E L      G +++++ P++ +  E      +E F 
Sbjct: 773 GTPPVDRLSIRTYVSEFDRV-TVREALLREHYRGGQSFYVVPRVSDLPE------IEEFL 825

Query: 508 -NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            N + E    + A+ HG+M+  + ++ M++F +G   +L+ATT++E G+D+  A+ +I+ 
Sbjct: 826 RNEVPE---VTFAVAHGQMAAGELDARMNAFYDGKYDVLLATTIVESGLDIPRANTMIVH 882

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-----PLSKNSYTRLSVLKNTEDGFLIA 621
            A+ FGLAQL+Q+RGRVGR +  +   L   P     P ++     LS L     GF +A
Sbjct: 883 RADMFGLAQLYQIRGRVGRSKLRAYAYLTTKPRVKLTPAAEKRLRVLSSLDTLGAGFTLA 942

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 943 SQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 978


>gi|56961865|ref|YP_173587.1| transcription-repair coupling factor [Bacillus clausii KSM-K16]
 gi|56908099|dbj|BAD62626.1| transcription-repair coupling factor [Bacillus clausii KSM-K16]
          Length = 1180

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 139/397 (35%), Positives = 219/397 (55%), Gaps = 17/397 (4%)

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
           +G   + +G    +   + P+  T+ Q  AIK+I +DM ++  M R+L GDVG GKT VA
Sbjct: 603 VGHRFSSDGPEQAEFESSFPYQETEDQLRAIKEIKEDMEKQRPMDRLLCGDVGYGKTEVA 662

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           + A   A+  G Q  I+ P  ILAQQH+E I     +  I V +++    +  + + L+ 
Sbjct: 663 IRAAFKAIMDGKQVAILVPTTILAQQHFETISDRFSDFPITVGVLSRFRSRKEQTEVLKG 722

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           +  G   +++GTH L    +Q+  L L+IVDE+ RFGV  + K+ +      VL +TATP
Sbjct: 723 LKAGSVDLVVGTHRLLSKDVQFRDLGLLIVDEEQRFGVTHKEKIKRMKANIDVLTLTATP 782

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWI 488
           IPRTL ++ LG  D+S I   P  R P++T ++  N   + E IER    LS G + Y +
Sbjct: 783 IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEFNPAIVREAIER---ELSRGGQVYVL 839

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             ++E     +   + E+ ++L      S A  HG+M++ + ES++  F  G   +L+ T
Sbjct: 840 YNRVE-----DIERMTEQISTLVPDARVSYA--HGQMNERELESIILDFLEGESDVLVTT 892

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYT 606
           T+IE G+D+ + + +I+ NA+  GL+QL+Q+RGRVGR   ++     Y P   L++ +  
Sbjct: 893 TIIETGVDIPNVNTLIVCNADKMGLSQLYQIRGRVGRSNRVAYSYFTYQPDKVLTEVAEK 952

Query: 607 RLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
           RL  +K  TE   GF IA  DL  R  G +LG +Q G
Sbjct: 953 RLQAIKEFTELGSGFKIAMRDLTIRGAGNLLGSQQHG 989


>gi|184154691|ref|YP_001843031.1| transcription-repair coupling factor [Lactobacillus fermentum IFO
           3956]
 gi|183226035|dbj|BAG26551.1| transcription-repair coupling factor [Lactobacillus fermentum IFO
           3956]
          Length = 1180

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 140/431 (32%), Positives = 231/431 (53%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R   A  E +A  +  L  +++ +K    P +    + +K     P++ TK Q 
Sbjct: 568 EWAKTKRRVAAKIEDIADDLVDLYAKRETEKGFAFPKD--DYLQEKFDDEFPYAETKDQL 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM +   M R+L GDVG GKT VAL A+  AV  G Q   + P  ILAQQHY
Sbjct: 626 QSIQEIKADMERPRPMDRLLVGDVGYGKTEVALRAIFKAVAGGKQVAFLVPTTILAQQHY 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALER-IAHGQAHIIIGTHALFQDSIQYYKLIL 397
           + +K   +   + + +++     A   K  +R + +G+  I++GTH +    +Q+  L L
Sbjct: 686 DTMKARFEGFPVTIALMS-RFKTAKELKETDRGLLNGEIDIVVGTHRILSKDVQFKDLGL 744

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P GR P
Sbjct: 745 LIVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMMGVRDLSVLETPPTGRYP 804

Query: 458 IKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           I+T ++  N     D ++  ++     G + Y++  ++      +   VV +   L    
Sbjct: 805 IQTYVLEQNGAVIRDGILREMQ----RGGQVYYLHNRVH-----DIERVVAQLAELVPE- 854

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I  IHG+MS+ + E V+  F  G   +L+ T++IE G+D+ + + + +E+A+  GLA
Sbjct: 855 -ARIGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANVNTLFVEDADRLGLA 913

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+Q+RGR+GR   ++    +Y     L++    RL+ +++ TE   GF IA  DL  R 
Sbjct: 914 QLYQIRGRIGRSNRVAYAYFMYQENKVLTEQGEKRLAAIRDFTELGSGFKIAMRDLSIRG 973

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 974 AGNLLGKQQHG 984


>gi|16077123|ref|NP_387936.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221307865|ref|ZP_03589712.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312187|ref|ZP_03593992.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317120|ref|ZP_03598414.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321383|ref|ZP_03602677.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|585481|sp|P37474|MFD_BACSU RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|467444|dbj|BAA05290.1| transcription-repair coupling factor [Bacillus subtilis]
 gi|2632322|emb|CAB11831.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 1177

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 137/380 (36%), Positives = 214/380 (56%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I +I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P
Sbjct: 621 PYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE IK+  Q+  I + +++    +    + ++ + +G   I+IGTH L    
Sbjct: 681 TTILAQQHYETIKERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K      +V 
Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVEDIERKADEISMLVP 857

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +A  HG+M++ + E+VM SF  G   +L++TT+IE G+D+ + + +I+
Sbjct: 858 ---------DAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIV 908

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            +A+  GL+QL+QLRGRVGR   ++     Y     L++ +  RL  +K  TE   GF I
Sbjct: 909 FDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKI 968

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +Q G
Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988


>gi|148543499|ref|YP_001270869.1| transcription-repair coupling factor [Lactobacillus reuteri DSM
           20016]
 gi|227363648|ref|ZP_03847762.1| transcription-repair coupling factor [Lactobacillus reuteri MM2-3]
 gi|325681843|ref|ZP_08161362.1| transcription-repair coupling factor [Lactobacillus reuteri MM4-1A]
 gi|148530533|gb|ABQ82532.1| transcription-repair coupling factor [Lactobacillus reuteri DSM
           20016]
 gi|227071317|gb|EEI09626.1| transcription-repair coupling factor [Lactobacillus reuteri MM2-3]
 gi|324978934|gb|EGC15882.1| transcription-repair coupling factor [Lactobacillus reuteri MM4-1A]
          Length = 1179

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 137/430 (31%), Positives = 233/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R   +  E +A ++  L  +++ +K    P   +  + ++   N P++ T+ Q 
Sbjct: 572 EWAKTKRRVSSKIEDIADELVDLYAKREAEKGYAFP--KDDYLQKQFDANFPYNETRDQL 629

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VA+ A+  AV  G Q   + P  +LAQQHY
Sbjct: 630 RSIDEIKEDMEKPKPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTVLAQQHY 689

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +  +   I + +++        ++    +  G   +++GTH +    +++  L L+
Sbjct: 690 NTLMRRFEGFPINIALMSRFKTPKELKETEAGLKDGSVDVVVGTHRILSKDVEFKDLGLL 749

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ LG  D+S +   PAGR PI
Sbjct: 750 IVDEEQRFGVKHKEKLKQLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPI 809

Query: 459 KTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T ++  N     D +I  ++     G + Y++  ++ + +E+     V     L     
Sbjct: 810 QTYVMEQNSSAIRDGIIREMQ----RGGQVYYLHNRVHDIEET-----VAWLQELVPE-- 858

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I  I+G+MS+ + E+V+  F  G   +L+ T++IE G+D+ +A+ + +ENA+  GLAQ
Sbjct: 859 ARIGYINGQMSENELETVLYEFIQGNYDVLVTTSIIETGVDIPNANTLFVENADRMGLAQ 918

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+Q+RGR+GR   ++    +Y P   L++    RL+ +++ TE   GF IA  DL  R  
Sbjct: 919 LYQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLAIRGA 978

Query: 631 GEILGIKQSG 640
           G +LG +Q G
Sbjct: 979 GNLLGKQQHG 988


>gi|314949307|ref|ZP_07852650.1| transcription-repair coupling factor [Enterococcus faecium TX0082]
 gi|313644313|gb|EFS08893.1| transcription-repair coupling factor [Enterococcus faecium TX0082]
          Length = 1173

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 232/431 (53%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   R+  +  E +A  +  L   ++ +K  G     +    ++     P+S T  Q 
Sbjct: 570 EWTKTKRKVSSKIEDIADDLIKLYAARESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 627

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 628 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 688 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 748 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +T ++  N   I E I R    +  G + +++  ++E  E+K    + +V          
Sbjct: 808 QTYVMEKNPGSIREAIHR---EMGRGGQVFYLYNRVETIEQKVEEIQELVPE-------- 856

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I   HG+M++   E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 857 -ARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916 TLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 976 AGNLLGAQQHG 986


>gi|226227554|ref|YP_002761660.1| transcription-repair coupling factor [Gemmatimonas aurantiaca T-27]
 gi|226090745|dbj|BAH39190.1| transcription-repair coupling factor [Gemmatimonas aurantiaca T-27]
          Length = 1104

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 217/394 (55%), Gaps = 19/394 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P   +G   +++  +  F  T  Q  A +D+ +D+  +  M R+L GDVG GKT +A+ A
Sbjct: 548 PHGADGAWQRQLESSFLFEDTPDQRKATEDVKRDLEGERPMDRLLVGDVGYGKTEIAIRA 607

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
              AV+ G Q  ++ P  ILA+QH         +  + VE+++     + +   +E++  
Sbjct: 608 AFKAVQGGRQVAVLVPTTILAEQHARSFGDRLADFPVTVEVMSRFQTASQQAVVVEKLKK 667

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            Q  I+IGTH L    + +  L L+IVDE+HRFGV+ + +L Q   +  VL +TATPIPR
Sbjct: 668 KQVDIVIGTHRLLSPDVAFGDLGLIIVDEEHRFGVKHKERLKQLKLSTDVLTLTATPIPR 727

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQ 491
           TL  +  G  D++ +   P  R P+ T + P +   I+E I R    L  G + +++  +
Sbjct: 728 TLHQSLAGLRDLTLMQTAPRDRSPVLTFVEPFDDALIEEAISR---ELDRGGQVFFVHNR 784

Query: 492 IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           IE  E    + R +V R         + +A+ HG+M + + E VM  F  G   +L++T 
Sbjct: 785 IETIEAIADHLRRIVPR---------ARVAVGHGQMKERELEKVMRQFVEGEVDILVSTL 835

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           ++E G+DV +A+ + +  A+H GLAQL+QLRGRVGR    + C LL    + +++  RL+
Sbjct: 836 IVESGLDVPNANTMFVNRADHLGLAQLYQLRGRVGRSHRRAYCFLLVPDRVDEDAERRLA 895

Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           VL++  +   G+ +A +DL+ R  G +LG +QSG
Sbjct: 896 VLEHHTELGAGYRVALKDLELRGAGNLLGPEQSG 929


>gi|257888639|ref|ZP_05668292.1| transcription-repair coupling factor [Enterococcus faecium
           1,141,733]
 gi|257824693|gb|EEV51625.1| transcription-repair coupling factor [Enterococcus faecium
           1,141,733]
          Length = 1173

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 232/431 (53%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   R+  +  E +A  +  L   ++ +K  G     +    ++     P+S T  Q 
Sbjct: 570 EWTKTKRKVSSKIEDIADDLIKLYAARESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 627

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 628 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 688 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 748 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +T ++  N   I E I R    +  G + +++  ++E  E+K    + +V          
Sbjct: 808 QTYVMEKNPGAIREAIHR---EMGRGGQVFYLYNRVETIEQKVEEIQELVPE-------- 856

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I   HG+M++   E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 857 -ARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916 TLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 976 AGNLLGAQQHG 986


>gi|322392420|ref|ZP_08065880.1| transcription-repair coupling factor [Streptococcus peroris ATCC
            700780]
 gi|321144412|gb|EFX39813.1| transcription-repair coupling factor [Streptococcus peroris ATCC
            700780]
          Length = 1167

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 150/407 (36%), Positives = 229/407 (56%), Gaps = 27/407 (6%)

Query: 269  IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             P+  T+ Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q V++ 
Sbjct: 611  FPYVETEDQLRSIEEIKKDMQTPQPMDRLLVGDVGFGKTEVAMRAAFKAVNNHKQVVVLV 670

Query: 329  PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            P  +LAQQHY   K+  +   + V++++    +  + + LE++  GQ  I+IGTH +   
Sbjct: 671  PTTVLAQQHYSNFKERFEQFAVNVDVLSRFRSKKEQIETLEKLKKGQVDILIGTHRVLSK 730

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +++  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I
Sbjct: 731  DVEFADLGLIIIDEEQRFGVKHKEALKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVI 790

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSV 503
               P  R P++T ++  N  D VI     VL E   G + Y++  +++  EKK S  + +
Sbjct: 791  ETPPTNRYPVQTYVLEQN--DHVIR--DAVLREIDRGGQVYYLYNKVDTIEKKVSELQEL 846

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +           +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ +
Sbjct: 847  IPE---------ASIGFVHGQMSEIRLENTLLDFIEGEYDILVTTTIIETGVDIPNANTL 897

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGF 618
             IENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K  TE   GF
Sbjct: 898  FIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKSLTEVSEKRLEAIKGFTELGSGF 957

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
             IA  DL  R  G +LG  QSG    +    EL+  LL+  IA+K+ 
Sbjct: 958  KIAMRDLSIRGAGNLLGSSQSGFIDSV--GFELYSQLLDEAIAKKNG 1002


>gi|257899966|ref|ZP_05679619.1| transcription-repair coupling factor [Enterococcus faecium Com15]
 gi|257837878|gb|EEV62952.1| transcription-repair coupling factor [Enterococcus faecium Com15]
          Length = 1173

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 232/431 (53%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   R+  +  E +A  +  L   ++ +K  G     +    ++     P+S T  Q 
Sbjct: 570 EWTKTKRKVSSKIEDIADDLIKLYAARESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 627

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 628 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 688 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 748 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +T ++  N   I E I R    +  G + +++  ++E  E+K    + +V          
Sbjct: 808 QTYVMEKNPGAIREAIHR---EMGRGGQVFYLYNRVETIEQKVEEIQELVPE-------- 856

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I   HG+M++   E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 857 -ARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916 TLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 976 AGNLLGAQQHG 986


>gi|227514331|ref|ZP_03944380.1| transcription-repair coupling factor [Lactobacillus fermentum ATCC
           14931]
 gi|227087303|gb|EEI22615.1| transcription-repair coupling factor [Lactobacillus fermentum ATCC
           14931]
          Length = 1180

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 140/431 (32%), Positives = 231/431 (53%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R   A  E +A  +  L  +++ +K    P +    + +K     P++ TK Q 
Sbjct: 568 EWAKTKRRVAAKIEDIADDLVDLYAKRETEKGFAFPKD--DYLQEKFDDEFPYAETKDQL 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM +   M R+L GDVG GKT VAL A+  AV  G Q   + P  ILAQQHY
Sbjct: 626 QSIQEIKADMERPRPMDRLLVGDVGYGKTEVALRAIFKAVAGGKQVAFLVPTTILAQQHY 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALER-IAHGQAHIIIGTHALFQDSIQYYKLIL 397
           + +K   +   + + +++     A   K  +R + +G+  I++GTH +    +Q+  L L
Sbjct: 686 DTMKARFEGFPVTIALMS-RFKTAKELKETDRGLLNGEIDIVVGTHRILSKDVQFKDLGL 744

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P GR P
Sbjct: 745 LIVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMMGVRDLSVLETPPTGRYP 804

Query: 458 IKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           I+T ++  N     D ++  ++     G + Y++  ++      +   VV +   L    
Sbjct: 805 IQTYVLEQNGAVIRDGILREMQ----RGGQVYYLHNRVH-----DIERVVAQLAELVPE- 854

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I  IHG+MS+ + E V+  F  G   +L+ T++IE G+D+ + + + +E+A+  GLA
Sbjct: 855 -ARIGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANVNTLFVEDADRLGLA 913

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+Q+RGR+GR   ++    +Y     L++    RL+ +++ TE   GF IA  DL  R 
Sbjct: 914 QLYQIRGRIGRSNRVAYAYFMYQENKVLTEQGEKRLAAIRDFTELGSGFKIAMRDLSIRG 973

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 974 AGNLLGKQQHG 984


>gi|188995578|ref|YP_001929830.1| transcription-repair coupling factor [Porphyromonas gingivalis ATCC
           33277]
 gi|188595258|dbj|BAG34233.1| transcription-repair coupling factor [Porphyromonas gingivalis ATCC
           33277]
          Length = 1122

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 143/408 (35%), Positives = 220/408 (53%), Gaps = 15/408 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q K+E G   + +  +  ++  +  +  T  QE A  ++  DM     M R++ 
Sbjct: 523 LIRLYAQRKEERGFAFSPDSYLQHELEASFLYEDTPDQERATAEVKADMESDRPMDRLIC 582

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   A   G Q  I+ P  +LA QHY+  +   QN  + +E I+   
Sbjct: 583 GDVGFGKTEVAVRAAFKAATDGKQVAILVPTTVLAYQHYQTFRDRLQNFPVRIEYISRAR 642

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                +  L  +A G+  IIIGTH L  + I+++ L L+++DE+ +FGV  + KL +   
Sbjct: 643 SAKDIKAILHDLAEGRIDIIIGTHRLVSNDIRFHDLGLLVIDEEQKFGVAVKEKLRKLQV 702

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L M+ATPIPRTL  + +G  D+S I   P  R P+ T +   +  D V E +   +
Sbjct: 703 NVDTLTMSATPIPRTLQFSLMGARDLSNINTPPPNRYPVATELARFS-PDIVREAVNFEM 761

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S   + + +  +I+  +E     +V+R     E   + +A+ HGRMS  + E ++  F +
Sbjct: 762 SRNGQVFIVHNRIDNIEE--IAGIVQR-----EVPDARVAVGHGRMSPTELERLILDFVH 814

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+ATT+IE GIDV +A+ III++A  +GL++LHQLRGRVGR    + C LL  PP
Sbjct: 815 YEYDVLVATTIIENGIDVPNANTIIIDDAHRYGLSELHQLRGRVGRSNRKAFCYLL-SPP 873

Query: 600 ---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
              LS +S  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 874 LSVLSDDSRRRLQAIENFSDLGSGIRIALQDLDIRGAGNVLGAEQSGF 921


>gi|188589474|ref|YP_001919598.1| transcription-repair coupling factor [Clostridium botulinum E3 str.
            Alaska E43]
 gi|188499755|gb|ACD52891.1| transcription-repair coupling factor [Clostridium botulinum E3 str.
            Alaska E43]
          Length = 1167

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 157/467 (33%), Positives = 249/467 (53%), Gaps = 25/467 (5%)

Query: 219  EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EW  + A+ R + +++    + L   R   K   G   + + +  ++     PF  T  Q
Sbjct: 575  EWQKAKAKVRKSINDIAEDLVKLYATRSTIK---GHKFSKDTQWQRQFEDEFPFEETPDQ 631

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +++++I +DM     M R+L GDVG GKT VAL A   AV  G Q  ++ P  ILA+QH
Sbjct: 632  LTSLEEIKKDMESDKVMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVALLVPTTILAEQH 691

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y+ +KK   +  I +++++       ++  ++R+  G   I++GTH L    IQ+  L L
Sbjct: 692  YKNMKKRFSDFPIKIDMVSRFRTAKEQKATIQRLKEGNVDILVGTHKLVSKDIQFKDLGL 751

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R P
Sbjct: 752  LIVDEEQRFGVSQKEKIKNIKKNVDVLTLSATPIPRTLHMSLTGARDISVIETAPEERYP 811

Query: 458  IKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            ++T ++  N  D++I     +L E   G + Y++  ++E+  E   R V E         
Sbjct: 812  VQTYVVEQN--DQLIR--DAILREIGRGGQVYFVYNRVEDINEMA-RYVQELVPE----- 861

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             S +++ HG+M++   E  M SF +    +L+ TT+IE GID+ + + II+ N++  GL+
Sbjct: 862  -SKVSVTHGQMTERQLEKEMLSFMDQESNVLVCTTIIETGIDIPNVNTIIVYNSDKMGLS 920

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            QL+QLRGRVGR   I+   LLY     L++ +  RL  LK+ TE   GF IA  DL+ R 
Sbjct: 921  QLYQLRGRVGRSNRIAYAYLLYAKDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 980

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
             G I+G  Q G         +L+  +LE   K  K  ++++P  T+V
Sbjct: 981  AGNIMGSSQHG--HMASVGYDLYCRMLEDTIKIIKGEISKEPIETTV 1025


>gi|51894370|ref|YP_077061.1| transcription-repair coupling factor [Symbiobacterium thermophilum
            IAM 14863]
 gi|51858059|dbj|BAD42217.1| transcription-repair coupling factor [Symbiobacterium thermophilum
            IAM 14863]
          Length = 1243

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 149/412 (36%), Positives = 226/412 (54%), Gaps = 21/412 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q +AI +I  DM +   M R+L GDVG GKT VAL A   A  AG Q  I+ P
Sbjct: 686  PYEETPDQLTAIAEIKADMEKARPMDRLLLGDVGYGKTEVALRAAFKAATAGKQVAILVP 745

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              ILAQQHY   K   +   I + ++        + + +  +A G   ++IGTH L  D 
Sbjct: 746  TTILAQQHYATCKSRMEGFPINLAVLNRFKSPKEQAEIIRGLAEGTIDVVIGTHRLLSDD 805

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +++  L L+IVDE+ RFGV  + ++ Q      VL ++ATPIPRTL +  +G  D+S IT
Sbjct: 806  VKFKDLGLLIVDEEQRFGVAHKERIKQLRANVDVLTLSATPIPRTLHMAMVGLRDMSIIT 865

Query: 450  EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
              P  R P++T +   +   + + I R    LS G + +++  +I+         V  R 
Sbjct: 866  TPPEDRYPVETFVAEYDDALVQDAIGR---ELSRGGQVFYVHNRIQ-----TLDDVAARL 917

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            + L     + IA+ HG+MS+   E ++  F +G   +L+ATT+IE GID+   + II+E+
Sbjct: 918  HRLVPE--ARIAVAHGQMSEDRLEKIVLDFMDGEYDVLVATTIIENGIDMPQVNTIIVED 975

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
            A+H GL+QL+QLRGRVGR   ++    LY     L++ S  RL  +K+ TE   GF IA 
Sbjct: 976  ADHLGLSQLYQLRGRVGRSNRLAYAYFLYRRDKVLTEASEKRLRAIKDFTELGSGFKIAM 1035

Query: 623  EDLKQRKEGEILGIKQSGMPKFLIAQP-ELHDSLLEIARKDAKHILTQDPDL 673
             DL+ R  G ILG +Q G   F+++   +L+  LLE A ++ K     +P++
Sbjct: 1036 RDLEIRGAGNILGPEQHG---FIVSVGFDLYCQLLEEAVRELKGEPAPEPEI 1084


>gi|323465804|gb|ADX69491.1| Transcriptional repair coupling factor [Lactobacillus helveticus
           H10]
          Length = 1165

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 142/430 (33%), Positives = 236/430 (54%), Gaps = 19/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +K  G   + +  + ++     P++ T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKQFEDAFPYAETLDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R++ GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++     A  ++ +E +  G+  +++GTH L    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLKEGKIDLVVGTHRLLSKDVEFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +  + +I  V+    L+ +  +G + +++  +I     S+    VE+   L  +  +
Sbjct: 801 QTYV--MEQIPSVVRDACLREMQRDG-QVFYLHNRI-----SDIDETVEKLQQLIPN--A 850

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL
Sbjct: 851 RIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 910

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF IA  DL  R  G
Sbjct: 911 YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAG 970

Query: 632 EILGIKQSGM 641
            +LG +Q G 
Sbjct: 971 NMLGAQQHGF 980


>gi|321313725|ref|YP_004206012.1| transcription-repair coupling factor [Bacillus subtilis BSn5]
 gi|320019999|gb|ADV94985.1| transcription-repair coupling factor [Bacillus subtilis BSn5]
          Length = 1177

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 137/380 (36%), Positives = 214/380 (56%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I +I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P
Sbjct: 621 PYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE IK+  Q+  I + +++    +    + ++ + +G   I+IGTH L    
Sbjct: 681 TTILAQQHYETIKERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K      +V 
Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVEDIERKADEISMLVP 857

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +A  HG+M++ + E+VM SF  G   +L++TT+IE G+D+ + + +I+
Sbjct: 858 ---------DAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIV 908

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            +A+  GL+QL+QLRGRVGR   ++     Y     L++ +  RL  +K  TE   GF I
Sbjct: 909 FDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKI 968

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +Q G
Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988


>gi|251779351|ref|ZP_04822271.1| transcription-repair coupling factor [Clostridium botulinum E1 str.
            'BoNT E Beluga']
 gi|243083666|gb|EES49556.1| transcription-repair coupling factor [Clostridium botulinum E1 str.
            'BoNT E Beluga']
          Length = 1167

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 157/467 (33%), Positives = 249/467 (53%), Gaps = 25/467 (5%)

Query: 219  EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EW  + A+ R + +++    + L   R   K   G   + + +  ++     PF  T  Q
Sbjct: 575  EWQKAKAKVRKSINDIAEDLVKLYATRSTIK---GHKFSKDTQWQRQFEDEFPFEETPDQ 631

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +++++I +DM     M R+L GDVG GKT VAL A   AV  G Q  ++ P  ILA+QH
Sbjct: 632  LTSLEEIKKDMESDKVMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVALLVPTTILAEQH 691

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y+ +KK   +  I +++++       ++  ++R+  G   I++GTH L    IQ+  L L
Sbjct: 692  YKNMKKRFSDFPIKIDMVSRFRTAKEQKATIQRLKEGNVDILVGTHKLVSKDIQFKDLGL 751

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R P
Sbjct: 752  LIVDEEQRFGVSQKEKIKNIKKNVDVLTLSATPIPRTLHMSLTGARDISVIETAPEERYP 811

Query: 458  IKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            ++T ++  N  D++I     +L E   G + Y++  ++E+  E   R V E         
Sbjct: 812  VQTYVVEQN--DQLIR--DAILREIGRGGQVYFVYNRVEDINEMA-RYVQELVPE----- 861

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             S +++ HG+M++   E  M SF +    +L+ TT+IE GID+ + + II+ N++  GL+
Sbjct: 862  -SKVSVTHGQMTERQLEKEMLSFMDQESNVLVCTTIIETGIDIPNVNTIIVYNSDKMGLS 920

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            QL+QLRGRVGR   I+   LLY     L++ +  RL  LK+ TE   GF IA  DL+ R 
Sbjct: 921  QLYQLRGRVGRSNRIAYAYLLYAKDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 980

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
             G I+G  Q G         +L+  +LE   K  K  ++++P  T+V
Sbjct: 981  AGNIMGSSQHG--HMASVGYDLYCRMLEDTIKIIKGEISKEPIETTV 1025


>gi|325684691|gb|EGD26845.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 1158

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 140/430 (32%), Positives = 224/430 (52%), Gaps = 19/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    +   A  E +A  +  L  +++ +K  G   + +G          P+ PT  Q 
Sbjct: 557 EWAKTKKRVAARVEDIADDLIDLYAKREAEK--GFAFSPDGSDQAAFEAAFPYEPTPDQL 614

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A  +I  DM +   M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQHY
Sbjct: 615 RATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHY 674

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + IK   +   + +   +    QA  +K +  +  G   +++GTH +    +Q+  L L+
Sbjct: 675 QTIKDRFKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQFKDLGLL 734

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + KL Q  T   VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 735 IIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPI 794

Query: 459 KTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++      + E  +R    +  G + +++  ++ + +E+     V R   L     +
Sbjct: 795 QTYVLEQLPGTVKEACQR---EMQRGGQVFYLHNRVGDIEET-----VARLEQLLPE--A 844

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HG+MS+   E ++  F +    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL
Sbjct: 845 RIAYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 904

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY P   L++    RL  +++  +   GF IA  DL  R  G
Sbjct: 905 YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAMRDFTELGAGFKIAMRDLSIRGAG 964

Query: 632 EILGIKQSGM 641
            +LG +Q G 
Sbjct: 965 NMLGAQQHGF 974


>gi|291522023|emb|CBK80316.1| transcription-repair coupling factor [Coprococcus catus GD/7]
          Length = 1178

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 145/430 (33%), Positives = 237/430 (55%), Gaps = 21/430 (4%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EWT +  + + A  EL    + L   R++ +  +  P  V  +  +++    P+  T+ Q
Sbjct: 577 EWTRTKTKVKGAVRELAMDLVKLYAARQESEGYVCGPDTVWQREFEEMF---PYEETQDQ 633

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI+   +DM     M R++ GDVG GKT VA+ A    V+ G Q  ++ P  ILAQQH
Sbjct: 634 LDAIEATKRDMESTKIMDRLVCGDVGFGKTEVAIRAAFKMVQEGRQCAVLVPTTILAQQH 693

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y    +  +   + + +++    +A ++K LE +  G+  I+IGTH L    +++  L L
Sbjct: 694 YNTFCQRMKEYPVNIGLLSRFRTKAEQKKTLEDLKAGRVDIVIGTHRLLSKDVEFKNLGL 753

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           ++VDE+ RFGV  + K+ +      VL +TATPIPRT+ ++ +G  D+S + E P  R+P
Sbjct: 754 LVVDEEQRFGVTHKEKIKKIKENVDVLTLTATPIPRTMHMSLIGIRDMSLLEEAPVDRQP 813

Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-T 515
           I+T ++  N  DE+I E +   L+ G + Y++  ++          + E    L E    
Sbjct: 814 IQTYVMEYN--DELIREAIMRELARGGQVYYVYNRV--------NGIDEIAAGLSELVPD 863

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           +S+A  HG+MS+ + E +M  F NG   +L++TT+IE G+D+ + + +II +A+  GL+Q
Sbjct: 864 ASVAYAHGQMSERELEKIMYQFINGEIDVLVSTTIIETGLDISNVNTMIIHDADKLGLSQ 923

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR    S   L+Y     L + +  RLS ++  TE   G+ IA  DL+ R  
Sbjct: 924 LYQLRGRVGRSNRTSYAFLMYKRDKMLKEVAEKRLSAIREFTELGSGYRIAMRDLEIRGA 983

Query: 631 GEILGIKQSG 640
           G +LG +QSG
Sbjct: 984 GNLLGERQSG 993


>gi|260663740|ref|ZP_05864628.1| transcription-repair coupling factor [Lactobacillus fermentum
           28-3-CHN]
 gi|260551791|gb|EEX24907.1| transcription-repair coupling factor [Lactobacillus fermentum
           28-3-CHN]
          Length = 1180

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 140/431 (32%), Positives = 231/431 (53%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R   A  E +A  +  L  +++ +K    P +    + +K     P++ TK Q 
Sbjct: 568 EWAKTKRRVAAKIEDIADDLVDLYAKRETEKGFAFPKD--DYLQEKFDDEFPYAETKDQL 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM +   M R+L GDVG GKT VAL A+  AV  G Q   + P  ILAQQHY
Sbjct: 626 QSIQEIKADMERPRPMDRLLVGDVGYGKTEVALRAIFKAVAGGKQVAFLVPTTILAQQHY 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALER-IAHGQAHIIIGTHALFQDSIQYYKLIL 397
           + +K   +   + + +++     A   K  +R + +G+  I++GTH +    +Q+  L L
Sbjct: 686 DTMKARFEGFPVTIALMS-RFKTAKELKETDRGLLNGEIDIVVGTHRILSKDVQFKDLGL 744

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P GR P
Sbjct: 745 LIVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMMGVRDLSVLETPPTGRYP 804

Query: 458 IKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           I+T ++  N     D ++  ++     G + Y++  ++      +   VV +   L    
Sbjct: 805 IQTYVLEQNGAVIRDGILREMQ----RGGQVYYLHNRVH-----DIERVVAQLAELVPE- 854

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I  IHG+MS+ + E V+  F  G   +L+ T++IE G+D+ + + + +E+A+  GLA
Sbjct: 855 -ARIGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANVNTLFVEDADRLGLA 913

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+Q+RGR+GR   ++    +Y     L++    RL+ +++ TE   GF IA  DL  R 
Sbjct: 914 QLYQIRGRIGRSNRVAYAYFMYQENKVLTEQGEKRLAAIRDFTELGSGFKIAMRDLSIRG 973

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 974 AGNLLGKQQHG 984


>gi|184152907|ref|YP_001841248.1| transcription-repair coupling factor [Lactobacillus reuteri JCM
           1112]
 gi|183224251|dbj|BAG24768.1| transcription-repair coupling factor [Lactobacillus reuteri JCM
           1112]
          Length = 1178

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 137/430 (31%), Positives = 233/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R   +  E +A ++  L  +++ +K    P   +  + ++   N P++ T+ Q 
Sbjct: 571 EWAKTKRRVSSKIEDIADELVDLYAKREAEKGYAFP--KDDYLQKQFDANFPYNETRDQL 628

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VA+ A+  AV  G Q   + P  +LAQQHY
Sbjct: 629 RSIDEIKEDMEKPKPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTVLAQQHY 688

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +  +   I + +++        ++    +  G   +++GTH +    +++  L L+
Sbjct: 689 NTLMRRFEGFPINIALMSRFKTPKELKETEAGLKDGSVDVVVGTHRILSKDVEFKDLGLL 748

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ LG  D+S +   PAGR PI
Sbjct: 749 IVDEEQRFGVKHKEKLKQLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPI 808

Query: 459 KTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T ++  N     D +I  ++     G + Y++  ++ + +E+     V     L     
Sbjct: 809 QTYVMEQNSSAIRDGIIREMQ----RGGQVYYLHNRVHDIEET-----VAWLQELVPE-- 857

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I  I+G+MS+ + E+V+  F  G   +L+ T++IE G+D+ +A+ + +ENA+  GLAQ
Sbjct: 858 ARIGYINGQMSENELETVLYEFIQGNYDVLVTTSIIETGVDIPNANTLFVENADRMGLAQ 917

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+Q+RGR+GR   ++    +Y P   L++    RL+ +++ TE   GF IA  DL  R  
Sbjct: 918 LYQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLAIRGA 977

Query: 631 GEILGIKQSG 640
           G +LG +Q G
Sbjct: 978 GNLLGKQQHG 987


>gi|306826192|ref|ZP_07459527.1| transcription-repair coupling factor [Streptococcus sp. oral taxon
            071 str. 73H25AP]
 gi|304431668|gb|EFM34649.1| transcription-repair coupling factor [Streptococcus sp. oral taxon
            071 str. 73H25AP]
          Length = 1167

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 145/405 (35%), Positives = 229/405 (56%), Gaps = 23/405 (5%)

Query: 269  IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             P+  T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV    Q V++ 
Sbjct: 609  FPYVETDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLV 668

Query: 329  PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            P  +LAQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +   
Sbjct: 669  PTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQSETLEKLKNGQVDILIGTHRVLSK 728

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             + +  L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I
Sbjct: 729  DVVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVI 788

Query: 449  TEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
               P  R P++T ++  N   I + I R    +  G + Y++  +++        ++ ++
Sbjct: 789  ETPPTNRYPVQTYVLEKNPSVIRDAILR---EMERGGQVYYLYNKVD--------TIDQK 837

Query: 507  FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L E    ++I  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + I
Sbjct: 838  VSELQELIPEAAIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFI 897

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLI 620
            ENA+H GL+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K  TE   GF I
Sbjct: 898  ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKI 957

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDA 663
            A  DL  R  G +LG  QSG    +    EL+  LLE  IA+++ 
Sbjct: 958  AMRDLSIRGAGNLLGKSQSGFIDSV--GFELYSQLLEEAIAKRNG 1000


>gi|291482427|dbj|BAI83502.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           natto BEST195]
          Length = 1177

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 137/380 (36%), Positives = 214/380 (56%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I +I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P
Sbjct: 621 PYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE IK+  Q+  I + +++    +    + ++ + +G   I+IGTH L    
Sbjct: 681 TTILAQQHYETIKERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K      +V 
Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVEDIERKADEISMLVP 857

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +A  HG+M++ + E+VM SF  G   +L++TT+IE G+D+ + + +I+
Sbjct: 858 ---------DAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIV 908

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            +A+  GL+QL+QLRGRVGR   ++     Y     L++ +  RL  +K  TE   GF I
Sbjct: 909 FDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKI 968

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +Q G
Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988


>gi|297582393|ref|YP_003698173.1| transcription-repair coupling factor [Bacillus selenitireducens
           MLS10]
 gi|297140850|gb|ADH97607.1| transcription-repair coupling factor [Bacillus selenitireducens
           MLS10]
          Length = 1186

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 138/396 (34%), Positives = 217/396 (54%), Gaps = 17/396 (4%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   + +G   ++     P+  T  Q  AI++I +DM Q   M R+L GDVG GKT VAL
Sbjct: 603 GFAFSPDGLEQREFESTFPYQETDDQLQAIEEIKKDMEQDRPMDRLLCGDVGYGKTEVAL 662

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   A+  G Q  I+ P  ILAQQHYE I++  Q+  I + +++    +   ++  E +
Sbjct: 663 RAAFKAIMDGKQVAILVPTTILAQQHYETIRERFQDFAINIGMLSRFRTRKQMKETTEAL 722

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G   I++GTH +    + + +L L++VDE+ RFGV  + K+ Q      VL +TATPI
Sbjct: 723 RKGTCDIVVGTHRILSKDVAFKELGLLVVDEEQRFGVTHKEKIKQLKANVDVLTLTATPI 782

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489
           PRTL ++ LG  D+S I   P  R P++T ++  N   + E IER    L+   + +++ 
Sbjct: 783 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHNDAFVREAIER---ELAREGQVFYLY 839

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            ++E     +   V +R   +     ++IA  HGRM++   E+VM  F +G   +L+ TT
Sbjct: 840 NRVE-----DIEMVADRIGMMVPD--ANIAFAHGRMTEAQLEAVMLDFLSGETDVLVTTT 892

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
           +IE G+D+ + + +II+ A+  GL+QL+QLRGRVGR   ++     +     L++ +  R
Sbjct: 893 IIETGVDIPNVNTLIIQEADRMGLSQLYQLRGRVGRSNRVAYAYFTHQQDKVLTEVAERR 952

Query: 608 LSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
           L  +K  TE   GF IA  DL  R  G +LG +Q G
Sbjct: 953 LQSIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|294618628|ref|ZP_06698167.1| transcription-repair coupling factor [Enterococcus faecium E1679]
 gi|291595147|gb|EFF26485.1| transcription-repair coupling factor [Enterococcus faecium E1679]
          Length = 1173

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 232/431 (53%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   R+  +  E +A  +  L   ++ +K  G     +    ++     P+S T  Q 
Sbjct: 570 EWTKTKRKVSSKIEDIADDLIKLYAARESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 627

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 628 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 688 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 748 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +T ++  N   I E I R    +  G + +++  ++E  E+K    + +V          
Sbjct: 808 QTYVMEKNPGAIREAIHR---EMGRGGQVFYLYNRVETIEQKVEEIQELVPE-------- 856

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I   HG+M++   E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 857 -ARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916 TLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 976 AGNLLGAQQHG 986


>gi|69245443|ref|ZP_00603438.1| Transcription-repair coupling factor [Enterococcus faecium DO]
 gi|257879854|ref|ZP_05659507.1| transcription-repair coupling factor [Enterococcus faecium
           1,230,933]
 gi|257882580|ref|ZP_05662233.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,502]
 gi|257891695|ref|ZP_05671348.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,410]
 gi|257894170|ref|ZP_05673823.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,408]
 gi|258614282|ref|ZP_05712052.1| transcription-repair coupling factor [Enterococcus faecium DO]
 gi|260559527|ref|ZP_05831708.1| transcription-repair coupling factor [Enterococcus faecium C68]
 gi|261206678|ref|ZP_05921376.1| transcription-repair coupling factor [Enterococcus faecium TC 6]
 gi|289565039|ref|ZP_06445493.1| transcription-repair coupling factor [Enterococcus faecium D344SRF]
 gi|293563193|ref|ZP_06677649.1| transcription-repair coupling factor [Enterococcus faecium E1162]
 gi|293570115|ref|ZP_06681195.1| transcription-repair coupling factor [Enterococcus faecium E1071]
 gi|294614900|ref|ZP_06694791.1| transcription-repair coupling factor [Enterococcus faecium E1636]
 gi|294623704|ref|ZP_06702537.1| transcription-repair coupling factor [Enterococcus faecium U0317]
 gi|314938215|ref|ZP_07845515.1| transcription-repair coupling factor [Enterococcus faecium
           TX0133a04]
 gi|314943110|ref|ZP_07849909.1| transcription-repair coupling factor [Enterococcus faecium TX0133C]
 gi|314952240|ref|ZP_07855255.1| transcription-repair coupling factor [Enterococcus faecium TX0133A]
 gi|314992098|ref|ZP_07857548.1| transcription-repair coupling factor [Enterococcus faecium TX0133B]
 gi|314996281|ref|ZP_07861337.1| transcription-repair coupling factor [Enterococcus faecium
           TX0133a01]
 gi|68195825|gb|EAN10261.1| Transcription-repair coupling factor [Enterococcus faecium DO]
 gi|257814082|gb|EEV42840.1| transcription-repair coupling factor [Enterococcus faecium
           1,230,933]
 gi|257818238|gb|EEV45566.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,502]
 gi|257828055|gb|EEV54681.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,410]
 gi|257830549|gb|EEV57156.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,408]
 gi|260074626|gb|EEW62947.1| transcription-repair coupling factor [Enterococcus faecium C68]
 gi|260079171|gb|EEW66864.1| transcription-repair coupling factor [Enterococcus faecium TC 6]
 gi|289163246|gb|EFD11092.1| transcription-repair coupling factor [Enterococcus faecium D344SRF]
 gi|291587487|gb|EFF19371.1| transcription-repair coupling factor [Enterococcus faecium E1071]
 gi|291592186|gb|EFF23804.1| transcription-repair coupling factor [Enterococcus faecium E1636]
 gi|291596919|gb|EFF28137.1| transcription-repair coupling factor [Enterococcus faecium U0317]
 gi|291604843|gb|EFF34321.1| transcription-repair coupling factor [Enterococcus faecium E1162]
 gi|313589525|gb|EFR68370.1| transcription-repair coupling factor [Enterococcus faecium
           TX0133a01]
 gi|313593312|gb|EFR72157.1| transcription-repair coupling factor [Enterococcus faecium TX0133B]
 gi|313595635|gb|EFR74480.1| transcription-repair coupling factor [Enterococcus faecium TX0133A]
 gi|313598169|gb|EFR77014.1| transcription-repair coupling factor [Enterococcus faecium TX0133C]
 gi|313642411|gb|EFS06991.1| transcription-repair coupling factor [Enterococcus faecium
           TX0133a04]
          Length = 1173

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 232/431 (53%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   R+  +  E +A  +  L   ++ +K  G     +    ++     P+S T  Q 
Sbjct: 570 EWTKTKRKVSSKIEDIADDLIKLYAARESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 627

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 628 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 688 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 748 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +T ++  N   I E I R    +  G + +++  ++E  E+K    + +V          
Sbjct: 808 QTYVMEKNPGAIREAIHR---EMGRGGQVFYLYNRVETIEQKVEEIQELVPE-------- 856

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I   HG+M++   E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 857 -ARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916 TLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 976 AGNLLGAQQHG 986


>gi|38233507|ref|NP_939274.1| transcription-repair coupling factor [Corynebacterium diphtheriae
            NCTC 13129]
 gi|38199767|emb|CAE49427.1| transcription-repair coupling factor [Corynebacterium diphtheriae]
          Length = 1264

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/429 (32%), Positives = 225/429 (52%), Gaps = 19/429 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G     +     ++  N P+  T+ Q 
Sbjct: 597  DWKNTKKKARAAVREIAGELVELYAKRQSAP--GHAFAPDSPWQHEMEDNFPYVETEDQM 654

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  +  DM + + M R++ GDVG GKT VA+ A   AV+ G Q V++ P  +LAQQH 
Sbjct: 655  LAIDAVKADMEKPSPMDRVVVGDVGYGKTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHL 714

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++      + ++ ++     +  ++ L+ +A G   I+IGTH L Q  +Q+  L LV
Sbjct: 715  STFEERMAGFPVTIKGLSRFTSPSESKEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLV 774

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 775  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPI 834

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
             T  +      +V   ++  L    + +++  ++   EKK    R +V           +
Sbjct: 835  LT-YVGAQEDKQVAAAIRRELLRDGQVFYVHNKVSDIEKKARELRELVPE---------A 884

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             I + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QL
Sbjct: 885  RIVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 944

Query: 577  HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR  E      LY     L++NSY RL+ +    D   G  +A +DL+ R  G
Sbjct: 945  HQLRGRVGRSRERGYAYFLYPKGATLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 1004

Query: 632  EILGIKQSG 640
             +LG +QSG
Sbjct: 1005 NVLGAQQSG 1013


>gi|149371008|ref|ZP_01890603.1| transcription-repair coupling factor [unidentified eubacterium
           SCB49]
 gi|149355794|gb|EDM44352.1| transcription-repair coupling factor [unidentified eubacterium
           SCB49]
          Length = 1115

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/424 (33%), Positives = 226/424 (53%), Gaps = 18/424 (4%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   N +  +  ++  +  F  T  Q +A  D+  DM  +  M R++ GDVG GKT VA+
Sbjct: 534 GFQYNPDSYLQHELESSFMFEDTPDQSTATADVKADMESERPMDRLVCGDVGFGKTEVAV 593

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV+ G Q  I+ P  ILA QH+    +      + V+ +        RR  LE +
Sbjct: 594 RAAFKAVDNGKQVAILVPTTILAYQHFNTFSERLSGMPVTVDYLNRFRTAKERRTVLEGL 653

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G+  I+IGTH L   S+++  L L+I+DE+ +FGV  + KL         L +TATPI
Sbjct: 654 KDGKIDIVIGTHQLVSKSVEFKDLGLLIIDEEQKFGVAVKDKLKTIKENVDTLTLTATPI 713

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICP 490
           PRTL  + +   D+S IT  P  R P++T ++   +  E+I + ++  +S G + +++  
Sbjct: 714 PRTLQFSLMAARDLSVITTPPPNRHPVETQVVRFEQ--ELIRDAVRYEISRGGQTFFVHN 771

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +I+  KE     +++R         + I I HG+M     E++M SF N    +L+ATT+
Sbjct: 772 RIDNIKE--VAGMIQRLVP-----DAKIGIGHGQMDGKKLEALMLSFMNNEFDVLVATTI 824

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRL 608
           IE G+DV +A+ I I NA +FGL+ LHQ+RGRVGR  + + C  +  P   ++ ++  R+
Sbjct: 825 IESGLDVSNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKRM 884

Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKD 662
           + L+   D   G  IA +DL+ R  G++LG +QSG      F   Q  L +++ E+  K+
Sbjct: 885 TALEQFSDLGSGINIAMKDLEIRGAGDLLGGEQSGFINEIGFETYQKILAEAIDELKEKE 944

Query: 663 AKHI 666
            K +
Sbjct: 945 FKDL 948


>gi|297611935|ref|NP_001068018.2| Os11g0533100 [Oryza sativa Japonica Group]
 gi|255680143|dbj|BAF28381.2| Os11g0533100 [Oryza sativa Japonica Group]
          Length = 823

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/423 (32%), Positives = 236/423 (55%), Gaps = 23/423 (5%)

Query: 227 RLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +LA  +++   + L L R +Q +     P+ ++   A+      P+ PT  Q  A  D+ 
Sbjct: 228 KLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAE-----FPYEPTPDQNQAFIDVD 282

Query: 286 QDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-KK 343
           +D++++   M R++ GDVG GKT VA+ A+   + AG QA+++AP  ILA+QHY+ + ++
Sbjct: 283 KDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSER 342

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
           ++    I V + +G   +  + + + +I +G  HII+GTHA+  + + Y  L L++VDE+
Sbjct: 343 FSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEE 402

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            +FGVQQ+ K+     +  VL ++ATPIPRTL L   G  D S ++  P  R  ++T + 
Sbjct: 403 QKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVS 462

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522
             ++ +  +  +K  L+ G + +++ P+I        +++ +    L +      +A+ H
Sbjct: 463 GFSK-ERALSAIKFELARGGQVFYVVPRI--------KAIDDVLQFLKDSLPDVPMAVAH 513

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+    + +  M+ F  G  K+L+ T +IE GID+ +A+ ++++ AE FGLAQL+QLRGR
Sbjct: 514 GKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGR 573

Query: 583 VGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIK 637
           VGR        L Y     LSK +  RL  ++   D   GF +AE+D+  R  G + G +
Sbjct: 574 VGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQ 633

Query: 638 QSG 640
           QSG
Sbjct: 634 QSG 636


>gi|118594716|ref|ZP_01552063.1| transcription-repair coupling factor [Methylophilales bacterium
           HTCC2181]
 gi|118440494|gb|EAV47121.1| transcription-repair coupling factor [Methylophilales bacterium
           HTCC2181]
          Length = 1133

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 144/428 (33%), Positives = 228/428 (53%), Gaps = 19/428 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    +  L      A ++  L  ++  ++     IN+   ++   +   PF  T  Q+ 
Sbjct: 539 WEKSKKRALLQIHDTAAELLDLYAKRSLQRGYSSKINLNDYVS--FVEGFPFEETVDQKE 596

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+ +++DM     M R++ GDVG GKT VAL A   +V  G QA+++ P  +LA+QH+ 
Sbjct: 597 AIERVIEDMESARPMDRLICGDVGFGKTEVALRAAFISVLNGKQAIVLVPTTLLAEQHFN 656

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                     I +E I+    +  + ++LE++  G+  IIIGTH L Q  I++  L LV+
Sbjct: 657 NFSDRFAKWPIKIEEISRFKSKKQQLESLEKLEEGKIDIIIGTHRLLQPDIKFKDLGLVV 716

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV+Q+ KL        VL +TATPIPRTL +   G  + S I   P  R  IK
Sbjct: 717 IDEEHRFGVRQKEKLKAFRRNVDVLALTATPIPRTLSMAMEGLREFSVIATPPQKRLSIK 776

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           T ++  ++  I E + R     + G + Y++  ++     +  +S+ E+ ++L     + 
Sbjct: 777 TFVVNHSQGIIKEAVAR---EFNRGGQIYFLHNEV-----NTIQSMHEKLSALLP--DAK 826

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I + HG++ + + E VM  F      +L+ +T+IE GID+  A+ II+  A+ FGLAQLH
Sbjct: 827 IGVAHGQLQEKELERVMQDFHQQRINVLLCSTIIETGIDIPTANTIIMNRADKFGLAQLH 886

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR    +   LL      L+ N+  RL  ++  ED   G+ +A  DL+ R  GE
Sbjct: 887 QLRGRVGRSHHQAYAYLLIDEERKLTSNAKKRLEAIQLMEDLGAGYHLAMHDLEIRGAGE 946

Query: 633 ILGIKQSG 640
           +LG  QSG
Sbjct: 947 LLGDNQSG 954


>gi|78066724|ref|YP_369493.1| transcription-repair coupling factor [Burkholderia sp. 383]
 gi|77967469|gb|ABB08849.1| transcription-repair coupling factor [Burkholderia sp. 383]
          Length = 1156

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 157/433 (36%), Positives = 230/433 (53%), Gaps = 27/433 (6%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 596  KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQ 655

Query: 324  AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
              +++P  +LA+QH + F  ++      IVE+      +     A+ +I  G   I+IGT
Sbjct: 656  VALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFKTAK-EVNAAIAQINEGSVDIVIGT 714

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 715  HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 774

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKES 498
             D S I   P  R  IKT    + R +E + R  ++  L  G + Y++  ++E  E +++
Sbjct: 775  RDFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKA 831

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               ++V           + I I HG+M + + E VM  F      +L+ TT+IE GIDV 
Sbjct: 832  MLEALVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 882

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
             A+ II+  ++ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+
Sbjct: 883  SANTIIMHRSDKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEE 942

Query: 617  ---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
               GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL
Sbjct: 943  LGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDL 998

Query: 674  TSVRGQSIRILLY 686
            T+    +  I L+
Sbjct: 999  TAPLAATTEINLH 1011


>gi|262376147|ref|ZP_06069377.1| transcription-repair coupling factor [Acinetobacter lwoffii SH145]
 gi|262308748|gb|EEY89881.1| transcription-repair coupling factor [Acinetobacter lwoffii SH145]
          Length = 1152

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/428 (32%), Positives = 226/428 (52%), Gaps = 19/428 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    R+ L     +A ++  +  R+  K   GI   V+  +  +      +  T  Q +
Sbjct: 555 WNKAKRKALEQIHDVAAELLHIQARRSSKP--GISFEVDQSLYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  I+ P  +LAQQHY+
Sbjct: 613 AIEATLHDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNNRQVAILVPTTLLAQQHYD 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K ++ +  G+  I+IGTH + Q+++Q+  L L+I
Sbjct: 673 SFKDRFADWPVRIEVLSRFGSSKAHTKTIDDLIEGKVDIVIGTHKILQENVQFKNLGLMI 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSS 517
           T  +  +  D + E +   L  G + Y++  +++  ++   + R +V           + 
Sbjct: 793 T-FVQEHTDDTIKEAILRELLRGGQVYFLHNEVDTIDRAAEHIRKLVPE---------AR 842

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLH
Sbjct: 843 VIVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLH 902

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR    +   L+      L  ++  RL  ++       GF++A EDL+ R  GE
Sbjct: 903 QLRGRVGRSHHQAYAYLMVPSLKALKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGE 962

Query: 633 ILGIKQSG 640
           +LG +QSG
Sbjct: 963 LLGEQQSG 970


>gi|148260750|ref|YP_001234877.1| transcription-repair coupling factor [Acidiphilium cryptum JF-5]
 gi|326403946|ref|YP_004284028.1| transcription-repair-coupling factor [Acidiphilium multivorum
           AIU301]
 gi|146402431|gb|ABQ30958.1| transcription-repair coupling factor [Acidiphilium cryptum JF-5]
 gi|325050808|dbj|BAJ81146.1| transcription-repair-coupling factor [Acidiphilium multivorum
           AIU301]
          Length = 1144

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 139/390 (35%), Positives = 209/390 (53%), Gaps = 18/390 (4%)

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +G  A+   R  P++ T+ Q  AI D+++D++    M R++ GDVG GKT VAL A   A
Sbjct: 579 DGAFAEFCAR-FPYTETEDQARAIADVMEDLAAGKPMDRLVCGDVGFGKTEVALRAAFIA 637

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             +G Q  ++ P  +LA+QHY    +      I VE ++  +      K    +A G  +
Sbjct: 638 AMSGAQVAVVVPTTLLARQHYRLFSERFAGLPIRVEQLSRLVSAKDTAKVKAGLADGTVN 697

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I++GTHAL   +I +  L L+IVDE+  FGV  + +L Q     HVL +TATPIPRTL L
Sbjct: 698 IVVGTHALLSKTIAFADLALLIVDEEQHFGVAHKERLKQLKADIHVLTLTATPIPRTLQL 757

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEK 495
              G  D+S IT  P  R  ++T I+P ++  I E I R +     G + + + P IE  
Sbjct: 758 ALTGVRDLSLITTPPVDRLAVRTFIMPWDKLVIREAIARERF---RGGQIFCVVPHIE-- 812

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              +   + ER   +     ++ A  HGR+   + E VM  F  G   +L+AT ++E G+
Sbjct: 813 ---DIDRMRERLAEIAPDLRTATA--HGRLPPTEIERVMTEFSEGKHDVLLATNIVESGL 867

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN 613
           D+   + I+I  A+ FGL QL+QLRGRVGRG++     L +     L+ +S  RL V++ 
Sbjct: 868 DMPAVNTILIWRADLFGLGQLYQLRGRVGRGKQRGYAYLTWPASHTLAASSQKRLEVMQT 927

Query: 614 TED---GFLIAEEDLKQRKEGEILGIKQSG 640
            +    GF +A  DL  R  G +LG +QSG
Sbjct: 928 LDTLGAGFTLASHDLDLRGAGNLLGDEQSG 957


>gi|78186513|ref|YP_374556.1| transcription-repair coupling factor [Chlorobium luteolum DSM 273]
 gi|78166415|gb|ABB23513.1| Transcription-repair coupling factor [Chlorobium luteolum DSM 273]
          Length = 1109

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 151/449 (33%), Positives = 236/449 (52%), Gaps = 24/449 (5%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           I L+ +  Q K + G     +    ++   +  F  T  Q  AI+++ +DM   + M R+
Sbjct: 500 INLIKLYAQRKMQAGFAFGPDSIFMREFESSFIFEETPDQLKAIEEVKKDMQATHPMDRL 559

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GD G GKT +A+ A   AVEA  Q  I+ P  ILA QH E   +   N  I + I++ 
Sbjct: 560 ICGDAGFGKTEIAMRAAFKAVEAKKQVAILTPTTILAHQHLETFTRRFLNFPITIAILSR 619

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +P+A +++ + RI  G+  I+IGTH L    + +  L L+++DE+  FGV+ + KL ++
Sbjct: 620 FVPRAEQQETIRRIKEGKVDIVIGTHRLVSKDVSFRDLGLLVIDEEQHFGVEVKEKLREQ 679

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI--NRIDEVIERL 475
                 L M+ATPIPRTL  + LG  D+S ++  P  R+P++TV+     + I   IER 
Sbjct: 680 FPGVDTLTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQPVETVVTDFEGDLIRSAIER- 738

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVM 534
             +  EG+  +           +   S+ E    LH+    + I   HG+M   + E +M
Sbjct: 739 -EIAREGQVFFL---------HNRVASLGEMQQLLHDLVPRARIVFAHGQMPARELEKIM 788

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
                G   +LI+TT+I  GID+ +A+ III  A+ FGL+ L+QLRGRVGR +  + C L
Sbjct: 789 MDVMQGEVDVLISTTIIGSGIDISNANTIIINRADMFGLSDLYQLRGRVGRSDRKAHCYL 848

Query: 595 LYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM---PKFLI 646
           +  P   L + +  RL+V+++ TE   GF IA  DL  R  G +LG +QSG      F +
Sbjct: 849 ITPPLNTLKREAIQRLAVIESFTELGSGFTIALRDLDIRGAGNLLGAEQSGYIHDLGFDL 908

Query: 647 AQPELHDSLLEIARKDAKHILTQD--PDL 673
            Q  L  ++ E+   D  H+ T +  PDL
Sbjct: 909 YQKMLEQTVAELKSGDFSHLFTGEARPDL 937


>gi|304413564|ref|ZP_07395037.1| Transcription-repair coupling factor (superfamily II helicase)
           [Candidatus Regiella insecticola LSR1]
 gi|304284407|gb|EFL92800.1| Transcription-repair coupling factor (superfamily II helicase)
           [Candidatus Regiella insecticola LSR1]
          Length = 1165

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/380 (36%), Positives = 208/380 (54%), Gaps = 18/380 (4%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           ++ PF  T  QE  I  +L DM Q   M R++ GDVG GKT VA+ A   A+    Q  +
Sbjct: 616 QDFPFDTTPDQEKTINAVLNDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAIVNKKQTAV 675

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  +LAQQH++  +       + +E+++       ++   ++   G+  I+IGTH L 
Sbjct: 676 LVPTTLLAQQHFDNFRDRFATWPVKIEMLSRFRRPKEQQAIFQQAYEGKIDILIGTHKLL 735

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           Q  + +  L L+IVDE+HRFGV+ + ++    T   +L +TATPIPRTL +   G  D+S
Sbjct: 736 QPHLHWKDLGLLIVDEEHRFGVRHKEQIKAMRTDVDILTLTATPIPRTLNMAMSGMRDLS 795

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSV 503
            I   PA R  +KT    +   DE++ R + +L E   G + +++   + EK E     +
Sbjct: 796 IIATPPARRLAVKTF---VREYDELLLR-EAILREILRGGQVFYLYNDV-EKIEGVATKL 850

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            E     H      IAI HG+M + D E VM+ F +    +L+ TT+IE GIDV +A+ I
Sbjct: 851 AELVPEAH------IAIGHGQMRERDLERVMNDFHHQRFNILVCTTIIETGIDVPNANTI 904

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLI 620
           IIE A+  GLAQLHQLRGRVGR    +   LL  P +  ++  RL  + + E+   GF +
Sbjct: 905 IIERADRLGLAQLHQLRGRVGRSHHQAYAYLLT-PNIKSDAKKRLEAIASLEELGAGFAL 963

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  GE+LG  QSG
Sbjct: 964 ATHDLEIRGAGELLGEDQSG 983


>gi|255659238|ref|ZP_05404647.1| transcription-repair coupling factor [Mitsuokella multacida DSM
           20544]
 gi|260848692|gb|EEX68699.1| transcription-repair coupling factor [Mitsuokella multacida DSM
           20544]
          Length = 1129

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 144/436 (33%), Positives = 235/436 (53%), Gaps = 32/436 (7%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKS 276
           EW  + AR + + +++    I +   RK  K     P +     +Q+   +  P+  T+ 
Sbjct: 501 EWVKAKARAKKSVEDIAQKLIEIYAKRKDAKGHAFPPDDA----SQREFEDAFPYEETED 556

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  AI +I  DM ++  M R+L GDVG GKT VA+ A   A   G Q  ++ P  +LAQQ
Sbjct: 557 QLRAIAEIKADMEREKPMDRLLCGDVGFGKTEVAIRAAYKAAMDGKQVAVLVPTTVLAQQ 616

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF-QDSIQYYKL 395
           HY+           ++++I        +++ +E++  GQ  I+IGTHA+  Q+ +++  L
Sbjct: 617 HYQTFTTRFNGFAPVIDVICRFRTPKQQKETIEKVRLGQVDILIGTHAILNQNKVKWKDL 676

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L+IVDE+ RFGV+Q+ K+ + A    VL ++ATPIPRTL ++ +G  D+S I   PA R
Sbjct: 677 GLLIVDEEQRFGVKQKDKIRKLAAGIDVLTLSATPIPRTLHMSLVGARDMSIIETPPAER 736

Query: 456 KPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            P++T ++  N  D +I   ++  +  G + Y+I  +            V+  + + +H 
Sbjct: 737 FPVQTYVVENN--DTIIANAIRREMKRGGQVYFIYNR------------VDTIDRMRDHI 782

Query: 515 TS-----SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            S      I   HG+M +   E VM  F  G   +L+AT+++E G+DV +A+ II+ NA+
Sbjct: 783 ESLVPEARIQTAHGQMPEEMLEHVMMDFYEGDYDILLATSIVENGLDVANANTIIVYNAD 842

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEED 624
           HFGL+QL+Q+RGRVGR   ++    +Y     L++ +  RL  +K   +   GF IA  D
Sbjct: 843 HFGLSQLYQMRGRVGRSHHMAFAYFVYQADKILTETAEKRLQAMKEFAELGAGFKIAMRD 902

Query: 625 LKQRKEGEILGIKQSG 640
           L+ R  G +LG +Q G
Sbjct: 903 LEIRGAGNLLGAQQHG 918


>gi|152995735|ref|YP_001340570.1| transcription-repair coupling factor [Marinomonas sp. MWYL1]
 gi|150836659|gb|ABR70635.1| transcription-repair coupling factor [Marinomonas sp. MWYL1]
          Length = 1137

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 146/414 (35%), Positives = 225/414 (54%), Gaps = 21/414 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q+ AI  ++ DMS K  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P
Sbjct: 592 PFEETPDQQMAIDAVMADMSAKKPMDRLVCGDVGFGKTEVAMRAAFLAVQDGKQVAVLVP 651

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHYE       +  + +E+++          +++R+  G+A I++GTH L Q  
Sbjct: 652 TTLLAQQHYENFCDRFADWPVEIELLSRFRSGKQSNTSIDRLESGKADIVVGTHKLIQSD 711

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L LVI+DE+HRFGV+Q+ +         +L +TATPIPRTL ++  G  D+S I 
Sbjct: 712 IKFANLGLVIIDEEHRFGVKQKEQFKALRAEVDILTLTATPIPRTLNMSLSGIRDLSIIA 771

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             PA R  +KT +   +  +  E I R    L  G + Y++  +++        ++ +  
Sbjct: 772 TPPAKRLSVKTFVKQKDDHQTKEAILR---ELHRGGQVYYLHNEVQ--------TIQKTA 820

Query: 508 NSLHEHFTSSIAII-HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             L E    +  I+ HG+M + + E VM  F +    +L+ +T+IE GID+ +A+ IIIE
Sbjct: 821 EELEELIPEARVIVGHGQMRERELEQVMSDFYHKRANVLVCSTIIETGIDIPNANTIIIE 880

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGLAQLHQLRGRVGR    +   LL      ++ ++  RL  +   +    GF +A
Sbjct: 881 RADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNDRKVTGDAEKRLEAITLADTLGAGFTLA 940

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             DL+ R  GE+LG  QSG  + +     L   +L+ A K  K+  + D D+TS
Sbjct: 941 THDLEIRGTGELLGDGQSGHIEHVGFS--LFMDMLDRAVKSLKNGESPDIDITS 992


>gi|332685798|ref|YP_004455572.1| transcription-repair coupling factor [Melissococcus plutonius ATCC
           35311]
 gi|332369807|dbj|BAK20763.1| transcription-repair coupling factor [Melissococcus plutonius ATCC
           35311]
          Length = 1181

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 212/379 (55%), Gaps = 17/379 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q  +  +I  DM +   M R+L GDVG GKT VAL A   A+    Q V + P
Sbjct: 618 PYTETDDQLRSAAEIKHDMEKIRPMDRLLVGDVGYGKTEVALRAAFKAIACHKQVVFLVP 677

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE +     +  + V +++    +  + + +++I HGQ  I++GTH L    
Sbjct: 678 TTILAQQHYETMIDRFADFPVEVGLLSRFRTKKQQNETIQKIKHGQIDIVVGTHRLLSKD 737

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I +  L L+I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 738 ITFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIE 797

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
             PA R PI+T I+  N +  + E ++  L+ G + +++  ++E  EKK    +++V   
Sbjct: 798 TPPANRYPIQTYIME-NNLGAIREGIERELARGGQIFYLYNRVETIEKKVEEIKALVPE- 855

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + +A  HG+M+++  E+ +  F      +L+ TT+IE G+D+ + + + +EN
Sbjct: 856 --------ARVAYAHGQMTEVKLENTLFDFIEQQYDILVTTTIIETGVDIPNVNTLFVEN 907

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A++ GL+ L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA 
Sbjct: 908 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 967

Query: 623 EDLKQRKEGEILGIKQSGM 641
            DL  R  G +LG +Q G 
Sbjct: 968 RDLSIRGAGNLLGAQQHGF 986


>gi|108864446|gb|ABA94062.2| CarD-like transcriptional regulator family protein, expressed
           [Oryza sativa Japonica Group]
          Length = 832

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/423 (32%), Positives = 236/423 (55%), Gaps = 23/423 (5%)

Query: 227 RLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +LA  +++   + L L R +Q +     P+ ++   A+      P+ PT  Q  A  D+ 
Sbjct: 237 KLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAE-----FPYEPTPDQNQAFIDVD 291

Query: 286 QDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-KK 343
           +D++++   M R++ GDVG GKT VA+ A+   + AG QA+++AP  ILA+QHY+ + ++
Sbjct: 292 KDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSER 351

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
           ++    I V + +G   +  + + + +I +G  HII+GTHA+  + + Y  L L++VDE+
Sbjct: 352 FSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEE 411

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            +FGVQQ+ K+     +  VL ++ATPIPRTL L   G  D S ++  P  R  ++T + 
Sbjct: 412 QKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVS 471

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522
             ++ +  +  +K  L+ G + +++ P+I        +++ +    L +      +A+ H
Sbjct: 472 GFSK-ERALSAIKFELARGGQVFYVVPRI--------KAIDDVLQFLKDSLPDVPMAVAH 522

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+    + +  M+ F  G  K+L+ T +IE GID+ +A+ ++++ AE FGLAQL+QLRGR
Sbjct: 523 GKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGR 582

Query: 583 VGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIK 637
           VGR        L Y     LSK +  RL  ++   D   GF +AE+D+  R  G + G +
Sbjct: 583 VGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQ 642

Query: 638 QSG 640
           QSG
Sbjct: 643 QSG 645


>gi|187932793|ref|YP_001884406.1| transcription-repair coupling factor [Clostridium botulinum B str.
            Eklund 17B]
 gi|187720946|gb|ACD22167.1| transcription-repair coupling factor [Clostridium botulinum B str.
            Eklund 17B]
          Length = 1167

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 157/467 (33%), Positives = 249/467 (53%), Gaps = 25/467 (5%)

Query: 219  EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EW  + A+ R + +++    + L   R   K   G   + + +  ++     PF  T  Q
Sbjct: 575  EWQKAKAKVRKSINDIAEDLVKLYATRSTIK---GHKFSKDTQWQRQFEDEFPFEETPDQ 631

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +++++I +DM     M R+L GDVG GKT VAL A   AV  G Q  ++ P  ILA+QH
Sbjct: 632  LTSLEEIKKDMESDKVMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVALLVPTTILAEQH 691

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y+ +KK   +  I +++++       ++  ++R+  G   I++GTH L    IQ+  L L
Sbjct: 692  YKNMKKRFSDFPIKIDMVSRFRTAKEQKVTIQRLKEGNVDILVGTHKLVSKDIQFKDLGL 751

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R P
Sbjct: 752  LIVDEEQRFGVSQKEKIKNIKKNVDVLTLSATPIPRTLHMSLTGARDISVIETPPEERYP 811

Query: 458  IKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            ++T ++  N  D++I     +L E   G + Y++  ++E+  E   R V E         
Sbjct: 812  VQTYVVEQN--DQLIR--DAILREIGRGGQVYFVYNRVEDINEMA-RYVQELVPE----- 861

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             S +++ HG+M++   E  M SF +    +L+ TT+IE GID+ + + II+ N++  GL+
Sbjct: 862  -SKVSVTHGQMTERQLEKEMISFMDQESNVLVCTTIIETGIDIPNVNTIIVYNSDKMGLS 920

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            QL+QLRGRVGR   I+   LLY     L++ +  RL  LK+ TE   GF IA  DL+ R 
Sbjct: 921  QLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 980

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
             G I+G  Q G         +L+  +LE   K  K  ++++P  T+V
Sbjct: 981  AGNIMGSSQHG--HMASVGYDLYCRMLEDTIKLIKGDISKEPIETTV 1025


>gi|150388007|ref|YP_001318056.1| transcription-repair coupling factor [Alkaliphilus metalliredigens
           QYMF]
 gi|149947869|gb|ABR46397.1| transcription-repair coupling factor [Alkaliphilus metalliredigens
           QYMF]
          Length = 1174

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/406 (33%), Positives = 223/406 (54%), Gaps = 13/406 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  + ++  G     +G+  ++     P+  T  Q  +I+++  DM Q+  M R+L 
Sbjct: 593 LLKLYAERRRNKGHAFGNDGEWQKQFEDLFPYEETPDQLKSIEEVKADMEQEGAMDRLLC 652

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q   + P  ILAQQH+   K+      + VE+++   
Sbjct: 653 GDVGYGKTEVAIRAGFKAVMDSKQVAFLVPTTILAQQHFNNFKQRFSGFPVTVEMLSRFK 712

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A +++ LE +  G   ++IGTH L    I++  L L+IVDE+ RFGV+ + ++ Q   
Sbjct: 713 TPAQQKQVLEGVRTGNVDVLIGTHRLLSKDIEFKDLGLLIVDEEQRFGVKHKERMKQMKE 772

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +  VL +TATPIPRTL ++ +G  D+S I + P  R P++T +IP N    +I+ +   +
Sbjct: 773 SIDVLTLTATPIPRTLHMSMVGIRDMSVIEDPPEERFPVQTYVIPYNE-SMIIDAITKEM 831

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + G + Y++  +++         V  +   L     + +A+ HG+M + + E +M  + +
Sbjct: 832 ARGGQTYYVYNRVD-----GIHQVARKLQELIPE--ARVAVGHGQMGERELEMLMMDYLD 884

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+ TT+IE G+D+ + + I+I +A+  GL+QL+QLRGRVGR  +     L+Y   
Sbjct: 885 GVYDVLVCTTIIETGLDISNVNTIMIHDADKLGLSQLYQLRGRVGRSSQQGYAYLMYQRD 944

Query: 600 --LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
             LS+ +  RL  +K  TE   GF IA  DL+ R  G +LG +Q G
Sbjct: 945 KILSEVAEKRLKAIKEFTEFGSGFKIAMRDLEIRGAGNLLGSQQHG 990


>gi|288958061|ref|YP_003448402.1| transcription-repair coupling factor superfamily II helicase
           [Azospirillum sp. B510]
 gi|288910369|dbj|BAI71858.1| transcription-repair coupling factor superfamily II helicase
           [Azospirillum sp. B510]
          Length = 1171

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 144/426 (33%), Positives = 231/426 (54%), Gaps = 25/426 (5%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P+     + Q+     P+  T  Q  AI+DI  D+     M R++ GDVG GKT VAL A
Sbjct: 560 PVLTPEGVYQEFAARFPYPETDDQLKAIEDIFTDLGSGRPMDRLVCGDVGFGKTEVALRA 619

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALER-I 371
                 +G Q  ++ P  +LA+QH+  F  ++      +V++    M  A  +  +++ +
Sbjct: 620 AFMVAMSGKQVAVVVPTTLLARQHFRTFSSRFAGLPVRVVQL--SRMVTAREQTLVKKEL 677

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A G A I++GTHAL    +   +L +VIVDE+  FGV+Q+ +L +     HVL +TATPI
Sbjct: 678 AEGTADIVVGTHALLAKGLDLKRLGMVIVDEEQHFGVKQKERLKELRADIHVLTLTATPI 737

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWI 488
           PRTL +   G  ++S I   P  R  ++T ++P    D V+ R + +L E   G + +++
Sbjct: 738 PRTLQMALSGVRELSLIATPPVDRLAVRTFVLP---YDPVVIR-EAILREHYRGGQTFYV 793

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           CP+IE     +   V ER   L       I   HG+M+  + E VM +F  G  ++L+AT
Sbjct: 794 CPRIE-----DLAKVAERVRELVPEV--KIVTAHGQMAASELEDVMTAFDEGKFEVLLAT 846

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYT 606
            +IE G+D+ +A+ +I+  A+ FGLAQL+Q+RGRVGR ++     L Y P  PL+  +  
Sbjct: 847 NIIESGLDIPNANTLIVHRADLFGLAQLYQIRGRVGRSKKRGYAYLTYAPNKPLNATAQQ 906

Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           RL V++  +    GF +A  D+  R  G +LG +QSG  + +    EL+  +LE A  +A
Sbjct: 907 RLHVIETLDSLGAGFQLASHDMDIRGAGNLLGEEQSGQVREVGV--ELYQQMLEEAVANA 964

Query: 664 KHILTQ 669
           +  + +
Sbjct: 965 RAAMQE 970


>gi|108864445|gb|ABG22504.1| CarD-like transcriptional regulator family protein, expressed
           [Oryza sativa Japonica Group]
 gi|215767702|dbj|BAG99930.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 590

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 217/379 (57%), Gaps = 17/379 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           P+ PT  Q  A  D+ +D++++   M R++ GDVG GKT VA+ A+   + AG QA+++A
Sbjct: 34  PYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLA 93

Query: 329 PIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P  ILA+QHY+ + ++++    I V + +G   +  + + + +I +G  HII+GTHA+  
Sbjct: 94  PTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLT 153

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + + Y  L L++VDE+ +FGVQQ+ K+     +  VL ++ATPIPRTL L   G  D S 
Sbjct: 154 ERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASL 213

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           ++  P  R  ++T +   ++ +  +  +K  L+ G + +++ P+I        +++ +  
Sbjct: 214 MSTPPPERVAVRTYVSGFSK-ERALSAIKFELARGGQVFYVVPRI--------KAIDDVL 264

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             L +      +A+ HG+    + +  M+ F  G  K+L+ T +IE GID+ +A+ ++++
Sbjct: 265 QFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQ 324

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621
            AE FGLAQL+QLRGRVGR        L Y     LSK +  RL  ++   D   GF +A
Sbjct: 325 YAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVA 384

Query: 622 EEDLKQRKEGEILGIKQSG 640
           E+D+  R  G + G +QSG
Sbjct: 385 EKDMGIRGFGSLFGEQQSG 403


>gi|125577373|gb|EAZ18595.1| hypothetical protein OsJ_34121 [Oryza sativa Japonica Group]
          Length = 832

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/423 (32%), Positives = 236/423 (55%), Gaps = 23/423 (5%)

Query: 227 RLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +LA  +++   + L L R +Q +     P+ ++   A+      P+ PT  Q  A  D+ 
Sbjct: 237 KLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAE-----FPYEPTPDQNQAFIDVD 291

Query: 286 QDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-KK 343
           +D++++   M R++ GDVG GKT VA+ A+   + AG QA+++AP  ILA+QHY+ + ++
Sbjct: 292 KDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSER 351

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
           ++    I V + +G   +  + + + +I +G  HII+GTHA+  + + Y  L L++VDE+
Sbjct: 352 FSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEE 411

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            +FGVQQ+ K+     +  VL ++ATPIPRTL L   G  D S ++  P  R  ++T + 
Sbjct: 412 QKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVS 471

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522
             ++ +  +  +K  L+ G + +++ P+I        +++ +    L +      +A+ H
Sbjct: 472 GFSK-ERALSAIKFELARGGQVFYVVPRI--------KAIDDVLQFLKDSLPDVPMAVAH 522

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+    + +  M+ F  G  K+L+ T +IE GID+ +A+ ++++ AE FGLAQL+QLRGR
Sbjct: 523 GKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGR 582

Query: 583 VGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIK 637
           VGR        L Y     LSK +  RL  ++   D   GF +AE+D+  R  G + G +
Sbjct: 583 VGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQ 642

Query: 638 QSG 640
           QSG
Sbjct: 643 QSG 645


>gi|194467674|ref|ZP_03073661.1| transcription-repair coupling factor [Lactobacillus reuteri 100-23]
 gi|194454710|gb|EDX43607.1| transcription-repair coupling factor [Lactobacillus reuteri 100-23]
          Length = 1179

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/430 (31%), Positives = 233/430 (54%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R   +  E +A ++  L  +++ +K    P   +  + ++   N P++ T+ Q 
Sbjct: 572 EWAKTKRRVSSKIEDIADELVDLYAKREAEKGYAFP--KDDYLQKQFDANFPYNETRDQL 629

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VA+ A+  AV  G Q   + P  +LAQQHY
Sbjct: 630 RSIDEIKEDMEKPKPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTVLAQQHY 689

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +  +   I + +++        ++    +  G   +++GTH +    +++  L L+
Sbjct: 690 NTLMRRFEGFPINIALMSRFKTPKELKETEAGLKDGSVDVVVGTHRILSKDVEFKDLGLL 749

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ LG  D+S +   PAGR PI
Sbjct: 750 IVDEEQRFGVKHKEKLKQLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPI 809

Query: 459 KTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T ++  N     D +I  ++     G + Y++  ++ + +E+     V     L     
Sbjct: 810 QTYVMEQNSGAIRDGIIREMQ----RGGQVYYLHNRVHDIEET-----VAWLQELVPE-- 858

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I  I+G+MS+ + E+V+  F  G   +L+ T++IE G+D+ +A+ + +ENA+  GLAQ
Sbjct: 859 ARIGYINGQMSENELETVLYEFIQGNYDVLVTTSIIETGVDIPNANTLFVENADRMGLAQ 918

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+Q+RGR+GR   ++    +Y P   L++    RL+ +++ TE   GF IA  DL  R  
Sbjct: 919 LYQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLAIRGA 978

Query: 631 GEILGIKQSG 640
           G +LG +Q G
Sbjct: 979 GNLLGKQQHG 988


>gi|16126087|ref|NP_420651.1| transcription-repair coupling factor [Caulobacter crescentus CB15]
 gi|221234857|ref|YP_002517293.1| transcription-repair coupling factor [Caulobacter crescentus NA1000]
 gi|13423283|gb|AAK23819.1| transcription-repair coupling factor [Caulobacter crescentus CB15]
 gi|220964029|gb|ACL95385.1| transcription-repair coupling factor [Caulobacter crescentus NA1000]
          Length = 1155

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/416 (34%), Positives = 227/416 (54%), Gaps = 30/416 (7%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q SAI D+L+D+S    M R++ GDVG GKT VAL A      +G Q  I+ P
Sbjct: 604  PYEETDDQLSAIHDVLEDLSSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVCP 663

Query: 330  IGILAQQHYEFIKKYTQNTQIIV----EIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
              +LA+QHY+  K   Q   + V     ++TG      R    E +A+GQ  I++GTHA+
Sbjct: 664  TTLLARQHYKTFKDRFQGWPVKVTRLSRLVTGKEAAETR----EGLANGQFEIVVGTHAI 719

Query: 386  FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
                + +  L LVIVDE+  FGV+ + KL +     H+L +TATPIPRTL +   G  ++
Sbjct: 720  LSKQVSFKDLGLVIVDEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIREM 779

Query: 446  SKITEKPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
            S I   P  R  ++T I P + +   E + R K     G ++Y++ P+I++ ++      
Sbjct: 780  SIIATPPVDRLAVRTYISPFDPVTLREALLREKY---RGGQSYYVVPRIKDLED------ 830

Query: 504  VERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +E+F  L          + HG+M+    E VM +F  G   +L+ATT++E G+D+  A+ 
Sbjct: 831  IEKF--LRTQVPEVKFVVGHGQMAATQLEDVMTAFYEGQYDVLLATTIVESGLDIPSANT 888

Query: 563  IIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---G 617
            +I+  A+ FGLAQL+Q+RGRVGR +  +   L       L+ ++  RL VL++ +    G
Sbjct: 889  LIVHRADMFGLAQLYQIRGRVGRSKARAYAYLTTPVEKSLTPSAEKRLQVLQSLDSLGAG 948

Query: 618  FLIAEEDLKQRKEGEILGIKQSGMPKFL---IAQPELHDSLLEIARKDAKHILTQD 670
            F +A  DL QR  G +LG +QSG  K +   + Q  L D++ E+ ++  +  L +D
Sbjct: 949  FQLASHDLDQRGGGNLLGDEQSGHIKEIGVELYQQMLEDAVAELRQRQGQEALLED 1004


>gi|227552670|ref|ZP_03982719.1| transcription-repair coupling factor [Enterococcus faecium TX1330]
 gi|257897406|ref|ZP_05677059.1| transcription-repair coupling factor [Enterococcus faecium Com12]
 gi|293378835|ref|ZP_06624990.1| transcription-repair coupling factor [Enterococcus faecium PC4.1]
 gi|227178199|gb|EEI59171.1| transcription-repair coupling factor [Enterococcus faecium TX1330]
 gi|257833971|gb|EEV60392.1| transcription-repair coupling factor [Enterococcus faecium Com12]
 gi|292642376|gb|EFF60531.1| transcription-repair coupling factor [Enterococcus faecium PC4.1]
          Length = 1173

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 232/431 (53%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   R+  +  E +A  +  L   ++ +K  G     +    ++     P+S T  Q 
Sbjct: 570 EWTKTKRKVSSKIEDIADDLIKLYAVRESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 627

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 628 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 688 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 748 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +T ++  N   I E I R    +  G + +++  ++E  E+K    + +V          
Sbjct: 808 QTYVMEKNPGAIREAIHR---EMGRGGQVFYLYNRVETIEQKVEEIQELVPE-------- 856

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I   HG+M++   E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 857 -ARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916 TLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 976 AGNLLGAQQHG 986


>gi|330817293|ref|YP_004360998.1| Transcription-repair coupling factor [Burkholderia gladioli BSR3]
 gi|327369686|gb|AEA61042.1| Transcription-repair coupling factor [Burkholderia gladioli BSR3]
          Length = 1156

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 208/386 (53%), Gaps = 21/386 (5%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 595 KFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 654

Query: 324 AVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++P  +LA+QH + FI ++  +  + V  ++          A+ +I  G   I+IGT
Sbjct: 655 VALLSPTTLLAEQHTQTFIDRFA-DWPVRVAELSRFKSTKEVNAAIGQINEGSVDIVIGT 713

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G 
Sbjct: 714 HKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGL 773

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESN 499
            D S I   P  R  IKT +      D VI E +   L  G + Y++  ++E  E +++ 
Sbjct: 774 RDFSVIATAPQKRLAIKTFVR--REEDSVIREAMLRELKRGGQVYFLHNEVETIENRKAM 831

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              +V           + IAI HG+M + + E VM  F      +L+ TT+IE GIDV  
Sbjct: 832 LEELVPE---------ARIAIAHGQMHERELERVMRDFVGQRANVLLCTTIIETGIDVPS 882

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+ 
Sbjct: 883 ANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEEL 942

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG KQSG
Sbjct: 943 GSGFYLAMHDLEIRGTGEVLGDKQSG 968


>gi|323142960|ref|ZP_08077669.1| transcription-repair coupling factor [Succinatimonas hippei YIT
           12066]
 gi|322417277|gb|EFY07902.1| transcription-repair coupling factor [Succinatimonas hippei YIT
           12066]
          Length = 1164

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 146/416 (35%), Positives = 226/416 (54%), Gaps = 23/416 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A ++  L  R++ +   G    ++ +  ++      +  T  Q +AI   L DM Q   
Sbjct: 577 VAAELLDLYARRESRP--GHAFTIDERALEQFASGFGYEETPDQLAAINATLNDMQQGKP 634

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VAL A   A  +G Q  ++ P  ILA+QHY+  K+    T I+VE
Sbjct: 635 MDRLVCGDVGFGKTEVALRAAFVAANSGMQVALLVPTTILAEQHYQNFKERFAGTAIVVE 694

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            ++       + + L+++A G   I+IGTH L   ++++  L LVIVDE+HRFGV+Q+ K
Sbjct: 695 ELSRFKSIKEQNEILKKVASGGIDIVIGTHKLLSKTVKFKNLGLVIVDEEHRFGVKQKEK 754

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L +      +L +TATPIPRTL +   G  ++S I   P  R  +KT  +  N      E
Sbjct: 755 LKELRAEVDLLTLTATPIPRTLNMAMEGMRELSIIATPPEHRLAVKT-FVSENSDQLCRE 813

Query: 474 RLKVVLSEGKKAYWI---CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            +   L  G + Y++      I +K ES  + V E          + I I HG+M++ + 
Sbjct: 814 AIMRELRRGGQVYYLHNDVATINQKAESLQKLVPE----------AKIGIGHGQMAEREL 863

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + VM  F +    LL+ +T+IE G+DV  A+ III+ A+  GLAQLHQ+RGRVGR     
Sbjct: 864 QKVMRDFYHQRFNLLLCSTIIENGLDVSSANTIIIDRADLLGLAQLHQIRGRVGRSHH-Q 922

Query: 591 SCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           +   L+ PP   ++K++  RL  + + E+   GF++A  DL+ R  GE+LG +QSG
Sbjct: 923 AYAYLFTPPKNLITKDAKRRLDAIASMEELGAGFVLATHDLEIRGAGELLGEEQSG 978


>gi|269122841|ref|YP_003305418.1| DEAD/DEAH box helicase domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268314167|gb|ACZ00541.1| DEAD/DEAH box helicase domain protein [Streptobacillus moniliformis
           DSM 12112]
          Length = 900

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 141/377 (37%), Positives = 212/377 (56%), Gaps = 18/377 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            F+ T  Q+ A++DI  D+     M RIL GDVG GKT VA+ A   A+E G Q  I+AP
Sbjct: 400 SFNLTWDQQKAVEDIKHDLESGRLMDRILVGDVGYGKTEVAMRAAFKAIENGYQCAILAP 459

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA QH+E   K  ++  I V  ++  +   +    L+ + +G+  ++IGTH L  D 
Sbjct: 460 TTVLANQHFERCHKRFEDFGISVNNLS-RLTGKNTDDVLDGLKNGKIDLVIGTHRLLGDD 518

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+I+DE+ +FGV  + K+ ++    H+L ++ATPIPRTL L  LG  DIS I 
Sbjct: 519 VKFKNLGLLIIDEEQKFGVNAKEKIKKRKEDIHLLTLSATPIPRTLNLALLGIRDISLIQ 578

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R PI T  I  + I +VI  LK +  +G + ++I         +N + + E+  S
Sbjct: 579 SSPMDRLPIITQKIQEDEIKKVI--LKELSRDG-QVFYIT--------NNVKGMAEKQKS 627

Query: 510 LHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           L +      +I  IHG++S  + +  ++ F  G   +LIA+T++E GID+ +A+ IIIEN
Sbjct: 628 LKKLMPDFVNIEYIHGKLSPREIKQKINDFDEGKFDILIASTIVENGIDITNANSIIIEN 687

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILL---YHPPLSKNSYTRLSVLKNTE-DGFLIAEE 623
               GL+Q++QLRGRVGRG+    C LL   Y     K     L  ++  E  G+L++ E
Sbjct: 688 YTSLGLSQIYQLRGRVGRGKRQGYCYLLDSEYKSKKGKEKDKSLEKIEGVEGGGYLLSLE 747

Query: 624 DLKQRKEGEILGIKQSG 640
           DL  R  GEILG KQ G
Sbjct: 748 DLNIRGAGEILGEKQHG 764


>gi|189466485|ref|ZP_03015270.1| hypothetical protein BACINT_02860 [Bacteroides intestinalis DSM
           17393]
 gi|189434749|gb|EDV03734.1| hypothetical protein BACINT_02860 [Bacteroides intestinalis DSM
           17393]
          Length = 1131

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 141/409 (34%), Positives = 220/409 (53%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   +V+  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 532 LIKLYSQRREEKGFQFSVDSFLQRELEASFIYEDTPDQSKATADVKADMESNRPMDRLVC 591

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  K+  ++    VE ++   
Sbjct: 592 GDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKERLKDLPCRVEYLSRAR 651

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  ++ +A G  +I+IGTH +    IQ+  L L+I+DE+ +FGV  + KL Q   
Sbjct: 652 TAAQAKAVVKGLAAGDVNILIGTHRILGKDIQFKDLGLLIIDEEQKFGVSVKEKLRQLKV 711

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L MTATPIPRTL  + +G  D+S I   P  R PI+T +   N  + +++ +   +
Sbjct: 712 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNE-EVIVDAINFEM 770

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFK 538
           S   + + +  +I    E   ++++ER      H     IAI HG+M   + E ++  F 
Sbjct: 771 SRNGQVFLVNNRISNLPE--LKAMIER------HIPDCRIAIGHGQMEPTELEKIIFGFV 822

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +LIATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  P
Sbjct: 823 NYDYDVLIATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-AP 881

Query: 599 PLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PLS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 882 PLSSLTPEARRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 930


>gi|313123080|ref|YP_004033339.1| transcription-repair coupling factor (superfamily ii helicase)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279643|gb|ADQ60362.1| Transcription-repair coupling factor (Superfamily II helicase)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 1158

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/430 (32%), Positives = 224/430 (52%), Gaps = 19/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    +   A  E +A  +  L  +++ +K  G   + +G          P+ PT  Q 
Sbjct: 557 EWAKTKKRVAARVEDIADDLIDLYAKREAEK--GFAFSPDGSDQAAFEAAFPYEPTPDQL 614

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A  +I  DM +   M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQHY
Sbjct: 615 RATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHY 674

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + IK   +   + +   +    QA  +K +  +  G   +++GTH +    +Q+  L L+
Sbjct: 675 QTIKDRFKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQFKDLGLL 734

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + KL Q  T   VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 735 IIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPI 794

Query: 459 KTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++      + E  +R    +  G + +++  ++ + +E+     V R   L     +
Sbjct: 795 QTYVLEQLPGTVKEACQR---EMQRGGQVFYLHNRVGDIEET-----VARLEQLLPE--A 844

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HG+MS+   E ++  F +    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL
Sbjct: 845 RIAYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 904

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY P   L++    RL  +++  +   GF IA  DL  R  G
Sbjct: 905 YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDLSIRGAG 964

Query: 632 EILGIKQSGM 641
            +LG +Q G 
Sbjct: 965 NMLGAQQHGF 974


>gi|116513512|ref|YP_812418.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116092827|gb|ABJ57980.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 1158

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/430 (32%), Positives = 224/430 (52%), Gaps = 19/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    +   A  E +A  +  L  +++ +K  G   + +G          P+ PT  Q 
Sbjct: 557 EWAKTKKRVAARVEDIADDLIELYAKREAEK--GFAFSPDGSDQAAFEAAFPYEPTPDQL 614

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A  +I  DM +   M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQHY
Sbjct: 615 RATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHY 674

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + IK   +   + +   +    QA  +K +  +  G   +++GTH +    +Q+  L L+
Sbjct: 675 QTIKDRFKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQFKDLGLL 734

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + KL Q  T   VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 735 IIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPI 794

Query: 459 KTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++      + E  +R    +  G + +++  ++ + +E+     V R   L     +
Sbjct: 795 QTYVLEQLPGTVKEACQR---EMQRGGQVFYLHNRVGDIEET-----VARLEQLLPE--A 844

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HG+MS+   E ++  F +    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL
Sbjct: 845 RIAYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 904

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY P   L++    RL  +++  +   GF IA  DL  R  G
Sbjct: 905 YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDLSIRGAG 964

Query: 632 EILGIKQSGM 641
            +LG +Q G 
Sbjct: 965 NMLGAQQHGF 974


>gi|253582570|ref|ZP_04859791.1| transcription-repair coupling factor [Fusobacterium varium ATCC
           27725]
 gi|251835440|gb|EES63980.1| transcription-repair coupling factor [Fusobacterium varium ATCC
           27725]
          Length = 983

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 139/380 (36%), Positives = 221/380 (58%), Gaps = 18/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T SQ  AI+D+ +DM     M R++ GDVG GKT +AL A   A   G Q V+M
Sbjct: 452 SFPYKETASQLKAIEDVKRDMESDRIMDRVICGDVGYGKTEIALRAAFKASIDGKQVVVM 511

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHYE   +  +N  + +EI++    +  +++ L +IA G   I+IGTH +  
Sbjct: 512 VPTTVLAQQHYERFTERFKNYPVNIEILSRLKSEKEQKEVLNKIAAGTVDIVIGTHRILS 571

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L LV++DE+ +FGV+ + +L +      ++ +TATPIPRTL L+ LG  D+S 
Sbjct: 572 SDVKFKDLGLVVIDEEQKFGVKAKEQLKKLKNKIDMITLTATPIPRTLNLSLLGIRDLSV 631

Query: 448 ITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503
           I   P GRKPI+TV I  +  +I E+I  +  +  EG + ++I   ++  EKK +  R +
Sbjct: 632 IDTPPEGRKPIETVFIEKDDKKIKEII--MSEIAREG-QVFYIFNSVKNIEKKTNELRKI 688

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +  +  L          IHG+M   + ++ +  F+NG   +L++TT++E GID+ +A+ +
Sbjct: 689 LPSYLKLD--------YIHGQMLPKEIKNKIKDFENGDIDMLVSTTIVENGIDIENANTM 740

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLI 620
           II+  E  GL+Q++QLRGR+GRG     C LL     +K +  R   +KN  D   GF +
Sbjct: 741 IIDGVEKLGLSQIYQLRGRIGRGRRKGYCYLLTKEYQTKKAKEREESIKNLGDSGGGFQL 800

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           + ED++ R  GEILG +Q G
Sbjct: 801 SLEDMRIRGAGEILGDRQHG 820


>gi|67921537|ref|ZP_00515055.1| Transcription-repair coupling factor [Crocosphaera watsonii WH
           8501]
 gi|67856649|gb|EAM51890.1| Transcription-repair coupling factor [Crocosphaera watsonii WH
           8501]
          Length = 1160

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/400 (33%), Positives = 224/400 (56%), Gaps = 18/400 (4%)

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K IG    ++    Q++  + P+ PT  Q  AI+++  D+     M R++ GDVG GKT 
Sbjct: 588 KNIGFTYPLDTPWQQELEDSFPYQPTPDQLKAIQEVKIDLESDRPMDRLVCGDVGFGKTE 647

Query: 309 VALIAMAAAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           VA+ A+  AV +G  Q V +AP  IL QQHY  +K+      I + ++      + +++ 
Sbjct: 648 VAVRAIFKAVTSGHKQVVFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTASEKKEI 707

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           ++R++ G+  I++GT  L   S+++  L L+++DE+ RFGV Q+ K+    +   VL ++
Sbjct: 708 IQRLSTGELDIVVGTQQLLGKSVKFNDLGLLVIDEEQRFGVNQKEKIKDMKSHIDVLTLS 767

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL ++  G  ++S IT  P  R+PIKT +   N  D V   ++  L  G + ++
Sbjct: 768 ATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSRYNP-DAVRNAIRNELDRGGQVFY 826

Query: 488 ICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           + P++E  E+  +  + +V          ++ +AI HG+M   + E  M  F NG   +L
Sbjct: 827 VVPRVEGIEEVAAQIKRMVP---------SARMAIGHGQMDVNELEMTMLGFNNGDADIL 877

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKN 603
           + TT++E G+D+   + II+E+A+ FGLAQL+QLRGRVGR    +   LLY     L++ 
Sbjct: 878 VCTTIVESGLDIPRVNTIIVEDAQKFGLAQLYQLRGRVGRAGIQAHAWLLYPSKSELTET 937

Query: 604 SYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           +  RL  L+       G+ +A  D++ R  G +LG +QSG
Sbjct: 938 ARKRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSG 977


>gi|304391611|ref|ZP_07373553.1| transcription-repair coupling factor [Ahrensia sp. R2A130]
 gi|303295840|gb|EFL90198.1| transcription-repair coupling factor [Ahrensia sp. R2A130]
          Length = 1169

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 147/422 (34%), Positives = 235/422 (55%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKE--IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AGQ+  +   +Q KK   I +P  V G+ A K     P+  T  Q +AI  +  D++  
Sbjct: 588 MAGQLIAIAAARQLKKADPIQLPDGVYGEFAAKF----PYEETDDQLNAIDSVFADLASG 643

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-I 350
             M R++ GDVG GKT VAL A      +G Q  ++ P  +L++QH   +K +T+    +
Sbjct: 644 QPMDRLVCGDVGFGKTEVALRAAFLTAMSGKQVAVVVPTTLLSRQH---MKTFTERFHGL 700

Query: 351 IVEIITGNMPQAHRRKALERIA--HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            ++I+  +     +  +  + A   G A IIIGTHAL   SI++ +L L+I+DE+  FGV
Sbjct: 701 PIKIVQASRLVGSKDLSAAKAAAKDGTADIIIGTHALLGKSIEFKRLGLLIIDEEQHFGV 760

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           + + +L +     HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T ++P    
Sbjct: 761 KHKERLKELKADVHVLTLSATPIPRTLQLALTGVRELSLITTAPVDRMAVRTFVMP---F 817

Query: 469 DEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524
           D V+ R + +L E   G +++++CP++ +        +  R   L EH     +A+ HG+
Sbjct: 818 DGVVVR-EALLRERYRGGQSFYVCPRLAD--------IRGREEWLAEHVPELKVAVAHGQ 868

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   + E VM++F  G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+Q+RGRVG
Sbjct: 869 MPPGELEDVMNAFYEGRYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQMRGRVG 928

Query: 585 RGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
           R  +  +  LL  PP   L+  +  RL VL++ +    GF +A  DL  R  G ILG +Q
Sbjct: 929 R-SKTRAYALLTLPPKKVLTATAQRRLKVLQSLDTLGAGFQLASHDLDIRGAGNILGDEQ 987

Query: 639 SG 640
           SG
Sbjct: 988 SG 989


>gi|124385069|ref|YP_001029254.1| transcription-repair coupling factor [Burkholderia mallei NCTC 10229]
 gi|126448727|ref|YP_001080811.1| transcription-repair coupling factor [Burkholderia mallei NCTC 10247]
 gi|167919435|ref|ZP_02506526.1| transcription-repair coupling factor [Burkholderia pseudomallei
            BCC215]
 gi|238562222|ref|ZP_00440803.2| transcription-repair coupling factor [Burkholderia mallei GB8 horse
            4]
 gi|251766640|ref|ZP_02264525.2| transcription-repair coupling factor [Burkholderia mallei PRL-20]
 gi|254178318|ref|ZP_04884973.1| transcription-repair coupling factor [Burkholderia mallei ATCC 10399]
 gi|254200090|ref|ZP_04906456.1| transcription-repair coupling factor [Burkholderia mallei FMH]
 gi|254206426|ref|ZP_04912778.1| transcription-repair coupling factor [Burkholderia mallei JHU]
 gi|254297281|ref|ZP_04964734.1| transcription-repair coupling factor [Burkholderia pseudomallei 406e]
 gi|254358165|ref|ZP_04974438.1| transcription-repair coupling factor [Burkholderia mallei 2002721280]
 gi|124293089|gb|ABN02358.1| transcription-repair coupling factor [Burkholderia mallei NCTC 10229]
 gi|126241597|gb|ABO04690.1| transcription-repair coupling factor [Burkholderia mallei NCTC 10247]
 gi|147749686|gb|EDK56760.1| transcription-repair coupling factor [Burkholderia mallei FMH]
 gi|147753869|gb|EDK60934.1| transcription-repair coupling factor [Burkholderia mallei JHU]
 gi|148027292|gb|EDK85313.1| transcription-repair coupling factor [Burkholderia mallei 2002721280]
 gi|157807451|gb|EDO84621.1| transcription-repair coupling factor [Burkholderia pseudomallei 406e]
 gi|160699357|gb|EDP89327.1| transcription-repair coupling factor [Burkholderia mallei ATCC 10399]
 gi|238523096|gb|EEP86537.1| transcription-repair coupling factor [Burkholderia mallei GB8 horse
            4]
 gi|243065028|gb|EES47214.1| transcription-repair coupling factor [Burkholderia mallei PRL-20]
          Length = 1189

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 154/432 (35%), Positives = 226/432 (52%), Gaps = 25/432 (5%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 627  KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 686

Query: 324  AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
              +++P  +LA+QH +       +  + +  ++          A+ +I  G   I+IGTH
Sbjct: 687  VALLSPTTLLAEQHTQTFADRFADWPVRIAELSRFKTAKEVNAAIAQINEGSVDIVIGTH 746

Query: 384  ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
             L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  
Sbjct: 747  KLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLR 806

Query: 444  DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESN 499
            D S I   P  R  IKT    + R +E + R  ++  L  G + Y++  ++E  E +++ 
Sbjct: 807  DFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAM 863

Query: 500  FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
               +V           + I I HG+M + + E VM  F      +L+ TT+IE GIDV  
Sbjct: 864  LEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPS 914

Query: 560  ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
            A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+ 
Sbjct: 915  ANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEEL 974

Query: 617  --GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
              GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT
Sbjct: 975  GSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLT 1030

Query: 675  SVRGQSIRILLY 686
            +    +  I L+
Sbjct: 1031 APLAATTEINLH 1042


>gi|330984088|gb|EGH82191.1| transcription-repair coupling protein Mfd [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 1098

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 151/438 (34%), Positives = 226/438 (51%), Gaps = 22/438 (5%)

Query: 211 NPRKA-----KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI 265
           NP KA      D  W    +E  A    L+    L+ +R   ++  G+ +   G    + 
Sbjct: 499 NPEKAPLSKLNDPTWLQSLKE--AQVSALSVAKDLITLRTARERSTGVILKPAGDSYDRF 556

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
                +  T  Q+ AI DI+ D++    M R++ GDVG GKT VA+ A     + G Q  
Sbjct: 557 AETFAYDETADQKKAIADIMSDLTSGKPMDRLICGDVGFGKTEVAMRAAFMMADQGYQVA 616

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP  +LAQQHY       + T   V +   N   A  RK L +   G   I+IGTH L
Sbjct: 617 VLAPTTLLAQQHYSTFCSRFEETPHKVMLANKNTFSALERKQLSK---GDVQIVIGTHRL 673

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            Q  I +  L L+IVDE+H FGV+Q+ +L       H+L M ATPIPRTL +   G  D+
Sbjct: 674 LQGDINFRNLGLIIVDEEHLFGVKQKEQLRTVRGNKHLLSMAATPIPRTLGMAISGIRDM 733

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           S I   PA R  ++T++   N  D VI E ++  +S   + +++  +I      +    V
Sbjct: 734 SIIATPPARRLSVRTLLREQN--DRVIQEAVQREMSRSGQVFYLHNRI-----GSMPDCV 786

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   SL  +  + IA++HG M + +   +M +F+N    +L+ TTVIE+GIDV +A+ +I
Sbjct: 787 KHLQSLIPN--ARIAMVHGDMREDEMFDIMLAFRNREYDILVGTTVIEIGIDVPNANTLI 844

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTEDGFLIAE 622
           +E A+  GL QLHQLRGRVGR    +   LL +    ++      +    N  +GF+IA 
Sbjct: 845 VEKADALGLGQLHQLRGRVGRSTRQAYAYLLSNVSTGVANMRLKAMEAATNLGEGFVIAR 904

Query: 623 EDLKQRKEGEILGIKQSG 640
            D++ R  GEILG +QSG
Sbjct: 905 HDMEIRGIGEILGEEQSG 922


>gi|116493280|ref|YP_805015.1| transcription-repair coupling factor [Pediococcus pentosaceus ATCC
           25745]
 gi|116103430|gb|ABJ68573.1| transcription-repair coupling factor [Pediococcus pentosaceus ATCC
           25745]
          Length = 1165

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/427 (31%), Positives = 231/427 (54%), Gaps = 15/427 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    +   +  E +A  +  L  +++ +K  G     +    ++   + P++ T  Q 
Sbjct: 567 DWAKTKKNVASKIEDIADDLIELYAKREAEK--GFAFKPDDSYQRQFDNDFPYTETPDQL 624

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I +DM ++  M R+L GDVG GKT VAL A   AVE+G Q  I+ P  ILAQQH+
Sbjct: 625 RSIEEIKKDMERERPMDRLLVGDVGYGKTEVALRAAFKAVESGKQVAILVPTTILAQQHF 684

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + + +  +   I   I++     A  ++ LE +  G   +I+GTH L    +++  L L+
Sbjct: 685 DTMNERFEGYPIATGILSRFQTGAQVKETLEGLKDGSVDVIVGTHRLLSKDVEFKDLGLL 744

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + ++ +  +   VL +TATPIPRTL ++ +G  D+S I   P  R PI
Sbjct: 745 VIDEEQRFGVKHKERIKELKSQVDVLTLTATPIPRTLNMSMIGVRDLSVIETPPTNRYPI 804

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  N    + E +   +    + +++  +++     +   VV    +L     + +
Sbjct: 805 QTYVMEEN-AGAIREGIMREMRRNGQVFYLHNRVQ-----DIEKVVAEIEALVPE--ARV 856

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG+M++   E ++  F  G   +L+ TT+IE GID+ +A+ + +ENA+H GL+QL+Q
Sbjct: 857 GYIHGQMTEKQLEDILFEFIAGEYDVLVTTTIIETGIDIPNANTLFVENADHMGLSQLYQ 916

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEI 633
           LRGR+GR   ++    LY     L++    RL  +K+ TE   GF IA  DL  R  G +
Sbjct: 917 LRGRIGRSSRVAYAYFLYQKNRVLTELGEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 976

Query: 634 LGIKQSG 640
           LG +Q G
Sbjct: 977 LGKQQHG 983


>gi|240144343|ref|ZP_04742944.1| transcription-repair coupling factor [Roseburia intestinalis L1-82]
 gi|257203687|gb|EEV01972.1| transcription-repair coupling factor [Roseburia intestinalis L1-82]
          Length = 1176

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/406 (34%), Positives = 226/406 (55%), Gaps = 15/406 (3%)

Query: 276  SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
             QE AI+   +DM     M R++ GDVG GKT +A+ A   AV+ G Q   + P  ILAQ
Sbjct: 630  DQELAIEATKKDMESTKIMDRLICGDVGYGKTEIAIRAAFKAVQDGKQVAFLVPTTILAQ 689

Query: 336  QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
            QHY    +  ++  + ++++      A ++K +E +  G   IIIGTH L    + Y  L
Sbjct: 690  QHYNNFVQRMKDFPVNIDLLCRFRSSAEQKKTVEALKKGSVDIIIGTHRLLSKDVVYKDL 749

Query: 396  ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
             L+I+DE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  D+S + E P  R
Sbjct: 750  GLLIIDEEQRFGVTHKEKIKQLKTNIDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPMDR 809

Query: 456  KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             PI+T ++  N  + V E +   +S G +AY++  ++ E        V  +   L     
Sbjct: 810  VPIQTYVMEYNE-ELVREAISREISRGGQAYYVYNRVRE-----IADVAAKIAELVPE-- 861

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            +++A  HG+M + + E++M  F NG   +L++TT+IE G+D+ + + +II +A++ GL+Q
Sbjct: 862  ANVAYAHGQMKETELENIMYRFINGEIDVLVSTTIIETGLDISNVNTMIIHDADNMGLSQ 921

Query: 576  LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
            L+QLRGRVGR    +   L+Y     L + +  RL+ +K  TE   GF IA  DL+ R  
Sbjct: 922  LYQLRGRVGRSNRTAYAFLMYRRDKMLKEIAEKRLAAIKEYTELGSGFKIAMRDLEIRGA 981

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            G +LG +Q G  + +    +L+  +L  A K+AK +   +   TS+
Sbjct: 982  GNLLGAEQHGHMEAV--GYDLYCKMLNEAVKEAKGMDVAESFDTSI 1025


>gi|148239816|ref|YP_001225203.1| transcription-repair coupling factor [Synechococcus sp. WH 7803]
 gi|147848355|emb|CAK23906.1| Transcription-repair coupling factor [Synechococcus sp. WH 7803]
          Length = 1180

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 138/422 (32%), Positives = 228/422 (54%), Gaps = 22/422 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G    V+G    ++  + P+ PT  Q  A  ++ +DM +   M R++ GDVG GKT VA+
Sbjct: 589 GFAFPVDGPWQSELEESFPYEPTPDQLKATAEVKKDMEKSQPMDRLVCGDVGFGKTEVAI 648

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A+  A+ AG Q  ++AP  +LAQQH+  + +      I V ++        R+  LE +
Sbjct: 649 RAIFKAITAGRQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTAGERKSILEGL 708

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G    ++GTH L   S  + KL L++VDE+ RFGV Q+ K+        VL ++ATPI
Sbjct: 709 KKGTIDAVVGTHQLLSKSTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPI 768

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL ++  G  ++S IT  P  R+PIKT +  ++  + +   ++  L  G + +++ P+
Sbjct: 769 PRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDE-EAIRSAIRQELDRGGQVFYVVPR 827

Query: 492 IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +E  E   +  R ++     L         + HG+M++ + ES M +F  G   +++ TT
Sbjct: 828 VEGIEDVAAQLRQMLPGLKLL---------VAHGQMAEGELESAMVAFNGGEADVMLCTT 878

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYT 606
           ++E G+D+   + I+IE+A  FGLAQL+QLRGRVGR   I +   L++P    LS+ +  
Sbjct: 879 IVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGR-SGIQAHAWLFYPGNASLSEAARQ 937

Query: 607 RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660
           RL  ++       G+ +A  D++ R  G +LG++QSG  +   F +    L +SL EI  
Sbjct: 938 RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQG 997

Query: 661 KD 662
           +D
Sbjct: 998 QD 999


>gi|119478459|ref|ZP_01618444.1| transcription-repair coupling protein Mfd [marine gamma
           proteobacterium HTCC2143]
 gi|119448545|gb|EAW29792.1| transcription-repair coupling protein Mfd [marine gamma
           proteobacterium HTCC2143]
          Length = 1152

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 143/384 (37%), Positives = 208/384 (54%), Gaps = 25/384 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  QESAIK ++ D+       R++ GDVG GKT VA+ A   AV    Q  I+
Sbjct: 598 GFPFEETPDQESAIKAVVADLQSDAATDRLVCGDVGFGKTEVAMRAAFIAVHNSKQVAIL 657

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+E  K    +  + +++++     A +   L + A G+  I+IGTH L Q
Sbjct: 658 VPTTLLAQQHFESFKDRFADWPVSIDVLSRFRSSAEQADVLAKTAAGKIDILIGTHKLLQ 717

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             ++Y  L L+I+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S 
Sbjct: 718 KDVKYSDLGLLIIDEEHRFGVRQKEQLKSLRSEVDILTLTATPIPRTLNMAISGMRDLSI 777

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  +KT +   +   I E I  L+ +L  G + Y++  +++  E+     +++
Sbjct: 778 IATPPARRLSVKTFVRQSDNATIKEAI--LREIL-RGGQVYYLHNEVKTIEQTSRELQAL 834

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V             I I HG+M +   E VM  F +    LL+ TT+IE GIDV  A+ I
Sbjct: 835 VPEVR---------IGIGHGQMPERQLEQVMSDFYHKRFNLLLCTTIIETGIDVPSANTI 885

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLSVLKNTED--- 616
           +I  A+ FGLAQLHQLRGRVGR    +   +L   P +KN    +  RL  +   E+   
Sbjct: 886 LINRADKFGLAQLHQLRGRVGRSHHQAYAYML--TPDAKNMTGDAEKRLEAISQAEELGS 943

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF +A  DL+ R  GE+LG  QSG
Sbjct: 944 GFTLATHDLEIRGAGELLGDGQSG 967


>gi|319891456|ref|YP_004148331.1| Transcription-repair coupling factor [Staphylococcus pseudintermedius
            HKU10-03]
 gi|317161152|gb|ADV04695.1| Transcription-repair coupling factor [Staphylococcus pseudintermedius
            HKU10-03]
 gi|323465374|gb|ADX77527.1| transcription-repair coupling factor [Staphylococcus pseudintermedius
            ED99]
          Length = 1170

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 147/413 (35%), Positives = 226/413 (54%), Gaps = 23/413 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  +I +I  DM  +  M R+L GDVG GKT VA+ A   AV +G Q   +
Sbjct: 617  DFPYDLTDDQAKSIIEIKNDMESQRPMDRLLCGDVGYGKTEVAVRAAFKAVMSGKQVAFL 676

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE + +  ++  + + +++        R+  E +  G   I++GTH L  
Sbjct: 677  VPTTILAQQHYETLIERMRDFPVEIHLMSRFRTPKEVRETKEGLKSGFVDIVVGTHKLLG 736

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++Y  L L+IVDE+ RFGV+ + K+ Q      VL +TATPIPRTL ++ LG  D+S 
Sbjct: 737  KTVEYKDLGLLIVDEEQRFGVRHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSI 796

Query: 448  ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P++T ++    N I E +ER    LS   + +++  ++         S+ E
Sbjct: 797  IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNRVS--------SIYE 845

Query: 506  RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L      +SI + HG++ + D E  M  F NG   +L+ TT+IE G+DV +A+ +I
Sbjct: 846  KREQLQMLMPDASIGVAHGQLPERDLEETMLDFINGEYDILVTTTIIETGVDVPNANTLI 905

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFL 619
            IE+A+ FGL+QL+QLRGRVGR   I     L+  +  L++ +  RL  +K  TE   GF 
Sbjct: 906  IEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHATNRVLNEVAEERLQAIKEFTELGSGFK 965

Query: 620  IAEEDLKQRKEGEILGIKQSGMPKFLIAQP-ELHDSLLEIARKDAKHILTQDP 671
            IA  DL  R  G +LG +Q G   F+ +   +L+  +LE A  + + I  + P
Sbjct: 966  IAMRDLNIRGAGNLLGKQQHG---FIDSVGFDLYSQMLEEAVNEKRGIKEETP 1015


>gi|160871679|ref|ZP_02061811.1| transcription-repair coupling factor [Rickettsiella grylli]
 gi|159120478|gb|EDP45816.1| transcription-repair coupling factor [Rickettsiella grylli]
          Length = 1149

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 147/388 (37%), Positives = 219/388 (56%), Gaps = 23/388 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q      PF+ T+ Q  AI+ ++QDM+ +  M R++ GDVG GKT VA+ A   AV +  
Sbjct: 598 QAFAAQFPFTETQDQAQAIQQVIQDMTSERAMDRLVCGDVGFGKTEVAMRAAFLAVHSNK 657

Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q  ++ P  +LAQQHY+ F  ++ +   + VE+I+     A ++K LER+  G+  I++G
Sbjct: 658 QVALLVPTTLLAQQHYQNFCDRFAE-WPVHVEMISRFRSIASQKKILERLQQGKIDILVG 716

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH L    +++ +L L+I+DE+HRFGVQQ+ +L        +L +TATPIPRTL +   G
Sbjct: 717 THKLLSKELKFPRLGLLIIDEEHRFGVQQKERLKALRAQVDILSLTATPIPRTLNMALSG 776

Query: 442 DIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKE 497
             ++S I   PA R  IKT +   N   I E I R    L  G + Y++  Q++  EK  
Sbjct: 777 LRELSIIATPPARRLSIKTFVQQRNTRLIREAILR---ELFRGGQVYFLHNQVDSIEKVA 833

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
               ++V           + I + HG++ +   E VM  F +    +L+ TT+IE GIDV
Sbjct: 834 RELEALVPE---------ARIQVAHGQLRESQLERVMADFYHQRFNVLLCTTIIESGIDV 884

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE 615
             A+ III+ A+ FGLAQLHQLRGRVGR    +   L+  PP  ++ ++  RL    + E
Sbjct: 885 PSANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLMTPPPEMITADAMKRLEAFISLE 944

Query: 616 D---GFLIAEEDLKQRKEGEILGIKQSG 640
           D   GF +A  DL+ R  GE+LG +QSG
Sbjct: 945 DLGAGFSLAMHDLEIRGAGEVLGEQQSG 972


>gi|118587141|ref|ZP_01544570.1| transcription-repair coupling factor [Oenococcus oeni ATCC BAA-1163]
 gi|118432420|gb|EAV39157.1| transcription-repair coupling factor [Oenococcus oeni ATCC BAA-1163]
          Length = 1189

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 140/434 (32%), Positives = 235/434 (54%), Gaps = 26/434 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R   A  E +A ++  L  +++   E+G   +V+ +  Q+      +  T  Q 
Sbjct: 584  DWAKTKRRVTAKVEDIADELIALYSKRE--GEVGYAFSVDDQRQQEFDDGFAYPETVDQL 641

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +IK+I  DM  K  M R+L GDVG GKT VA  A   A+E   Q   + P  IL+QQHY
Sbjct: 642  RSIKEIKSDMENKKPMDRLLVGDVGFGKTEVAFRAAFKAIEDHKQVAFLTPTTILSQQHY 701

Query: 339  EF-IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            +  I++++   +I + +++        ++ ++++   Q  ++IGTH L    + +  L L
Sbjct: 702  QTAIERFSDFPEIKIAMLSRFNTAGQNKEVIKKLKAHQLDMVIGTHRLLSKDVAFDDLGL 761

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +I+DE+ RFGV+ + K+ Q      VL +TATPIPRTL +  +G  D+S +   PA R P
Sbjct: 762  LIIDEEQRFGVKHKEKIKQLRANVDVLTLTATPIPRTLDMALVGARDLSVLETPPANRFP 821

Query: 458  IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEH 513
            I+T ++  N   I   IE+    LS G + +++  +++  E+     + +V   N     
Sbjct: 822  IQTYVLEENWPVIAYAIEK---ELSRGGQTFFLHNRVQDIERTVGEIQRIVPDAN----- 873

Query: 514  FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +  IHG+M++   E V+  F NG   +L+ TT+IE G+D+ +A+ +I+EN+E FGL
Sbjct: 874  ----VGYIHGQMNETQLEDVLMDFLNGIYDVLVTTTIIETGVDIPNANTLIVENSERFGL 929

Query: 574  AQLHQLRGRVGRGEEISSCILLY---HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQ 627
            +QL+QLRGR+GR   ++     Y     P ++++  RL  +++ TE   GF +A  DL  
Sbjct: 930  SQLYQLRGRIGRSNRLAYAYFTYPGDRQP-TEDAQKRLEAIRDFTELGSGFKLAMRDLSI 988

Query: 628  RKEGEILGIKQSGM 641
            R  G++LG +Q G 
Sbjct: 989  RGAGDLLGKQQHGF 1002


>gi|318041677|ref|ZP_07973633.1| transcription-repair coupling factor [Synechococcus sp. CB0101]
          Length = 1185

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 140/422 (33%), Positives = 226/422 (53%), Gaps = 22/422 (5%)

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            G     +G    ++  + P+ PT  Q  AI D+ +DM +   M R++ GDVG GKT VA+
Sbjct: 594  GFCFPADGPWQSELEESFPYEPTPDQLKAIADVKRDMEKPQPMDRLVCGDVGFGKTEVAI 653

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A+  AV AG Q  ++AP  +LAQQH+  + +      I V ++        R+   E +
Sbjct: 654  RAIFKAVTAGKQVAMLAPTTVLAQQHWRSLSERFAPYPIKVSLLNRFRTAGERKAIQEGL 713

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
              G   +++GTH L      + +L L++VDE+ RFGV Q+ K+        VL ++ATPI
Sbjct: 714  GEGTVDVVVGTHQLLGKGTAFKQLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPI 773

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            PRTL ++  G  ++S IT  P  R+PIKT +  ++  + V   ++  L  G + +++ P+
Sbjct: 774  PRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDE-EAVRSAIRQELDRGGQIFYVVPR 832

Query: 492  IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +E  E      R +V     L         + HG+M++ + ES M +F  G   L++ TT
Sbjct: 833  VEGIEDVAEGLRLMVPGLRLL---------VAHGQMAEGELESAMVAFNAGEADLMLCTT 883

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYT 606
            ++E G+D+   + I+IE+A  FGLAQL+QLRGRVGR   I +   L++P    LS+ +  
Sbjct: 884  IVESGLDIPRVNTILIEDAHKFGLAQLYQLRGRVGR-SGIQAHAWLFYPGDASLSEAARQ 942

Query: 607  RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660
            RL  ++       G+ +A  D++ R  G +LG++QSG  +   F +    L +SL EI  
Sbjct: 943  RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQG 1002

Query: 661  KD 662
            +D
Sbjct: 1003 QD 1004


>gi|182414804|ref|YP_001819870.1| transcription-repair coupling factor [Opitutus terrae PB90-1]
 gi|177842018|gb|ACB76270.1| transcription-repair coupling factor [Opitutus terrae PB90-1]
          Length = 1205

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 148/412 (35%), Positives = 221/412 (53%), Gaps = 19/412 (4%)

Query: 238 IALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           +A  L+R Q  +E   G     +    ++   + PF+ T+ Q  AI++   DM +   M 
Sbjct: 578 LAAELLRIQAAREAQPGFAFPPDTTWQKEFEASFPFTETRDQLRAIEETKTDMERTQPMD 637

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH    ++      I +E++
Sbjct: 638 RLICGDVGFGKTEVAIRAAFKAVQGGRQVAMLVPTTVLAQQHLNTFRERMAGYPIAIEMV 697

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +    +A ++K L   A GQ  I+IGTH + Q  +++  L LVI+DE+ RFGV+ +    
Sbjct: 698 SRFRSRADQKKILTATAAGQVDILIGTHRVLQHDVKFRDLGLVIIDEEQRFGVKHKEVFK 757

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIE 473
           Q  +   VL M+ATPIPRTL L   G  D+S I   P  R PI+TV   +   DE  VI+
Sbjct: 758 QMRSTVDVLSMSATPIPRTLYLALTGARDLSVIETAPTNRHPIQTV---VKTYDEKLVID 814

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            ++  L  G + +++  +IE         V  R   L    T  I + HG+M   D E V
Sbjct: 815 AVRHELRRGGQVFYLHNRIE-----TINLVAARLRELMPDVT--IGVGHGQMEAADLEEV 867

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR--GEEISS 591
           M  F  G  +LL+ TT+IE G+D+ + + I+IE A+ FGL+QL+QLRGRVGR   +  + 
Sbjct: 868 MTEFVAGRYQLLVCTTIIESGLDIPNCNTILIEGADRFGLSQLYQLRGRVGRFKHQAYAY 927

Query: 592 CILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            +L  H  L   +  RL+ ++       GF IA  DL+ R  G +LG +QSG
Sbjct: 928 LLLHRHTRLLDVARQRLTAMRQHTQLGAGFRIAMRDLELRGAGNLLGAQQSG 979


>gi|83816849|ref|YP_444216.1| transcription-repair coupling factor [Salinibacter ruber DSM 13855]
 gi|83758243|gb|ABC46356.1| transcription-repair coupling factor [Salinibacter ruber DSM 13855]
          Length = 1142

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 140/379 (36%), Positives = 212/379 (55%), Gaps = 18/379 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q  A K + +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P 
Sbjct: 575 FEDTPDQAEATKAVKRDMEEPVPMDRLVCGDVGFGKTEVAVRAAFKAVQDGKQVAMLVPT 634

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILAQQH++   +  +   + VE+++    +  + K LE++  GQ  I+IGTH +  D I
Sbjct: 635 TILAQQHHDTFSERMERFPVNVEVLSRFRSRTEQSKVLEKLEKGQVDILIGTHRITSDDI 694

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L++VDE+ RFGV+ + KL +   A   L +TATPIPRTL  + LG  D+S I  
Sbjct: 695 TFDDLGLLVVDEEQRFGVKTKEKLRKMREAIDTLTLTATPIPRTLQFSLLGARDLSLIET 754

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R+PI T    I+  DE + R  +V   S G + ++I  +++         V E   
Sbjct: 755 PPPNRQPINT---EIHTFDEDVIRDAIVYETSRGGQVFFIHNRVK-----TIHEVAEMVR 806

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           ++  +    + + HG+MS  + E VM  F N    +L++T++IE G+D+ +A+ +II +A
Sbjct: 807 AMVPNV--RVGVGHGQMSASELEDVMLDFVNEKLDVLVSTSIIENGLDISNANTMIINHA 864

Query: 569 -EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622
            EHFGL++LHQLRGRVGR +  + C LL      L+ ++  RL  ++   D   GF IA 
Sbjct: 865 GEHFGLSELHQLRGRVGRSQRKAFCHLLVPSVHGLTDDARERLKAVEQFSDLGSGFDIAM 924

Query: 623 EDLKQRKEGEILGIKQSGM 641
            DL  R  G +LG +QSG 
Sbjct: 925 RDLDIRGAGSLLGAEQSGF 943


>gi|46447155|ref|YP_008520.1| transcription-repair coupling factor [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400796|emb|CAF24245.1| probable transcription-repair coupling factor mfd [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 1101

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 143/408 (35%), Positives = 221/408 (54%), Gaps = 18/408 (4%)

Query: 242 LMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L++   ++EI  G    ++    Q      PFS T+ Q +AI  I QDM  K  M R++ 
Sbjct: 549 LLKSYAEREIKEGFAYPIDSADLQSFEGEFPFSETEDQLAAISSIKQDMMSKKAMDRLIC 608

Query: 300 GDVGSGKTLVALIAMAAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           GDVG GKT VA+ A   AV  G  Q  ++ P  +LA QH++       N  I + I++  
Sbjct: 609 GDVGYGKTEVAMRAAFKAVTDGAKQVAVLVPTTVLAMQHFDNFLDRMANFPINIGILSRF 668

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
             Q   ++ LE IA+G   I+IGTH +  + +++  L LVI+DE+ RFGV+ +  L +  
Sbjct: 669 RTQKQIQETLEGIANGFIDIVIGTHRIIGEDVKFKDLGLVIIDEEQRFGVKAKEHLKKIK 728

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKV 477
                L ++ATPIPRTL ++ +G  D+S I   P  R P KT+I   +  D++I+  L  
Sbjct: 729 IGVDCLTLSATPIPRTLYMSLIGARDMSVINTPPQDRLPTKTIITEPS--DQIIQNALLR 786

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            LS   +A+ I  ++E     +  SV  R  SL     + + + HG+M   + ++   +F
Sbjct: 787 ELSRDGQAFVIHNRVE-----SIYSVSNRIKSLLPQ--ARVLVAHGQMHADEIDATFHAF 839

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL-- 595
           K+G   +L+ATT++E G+D+ +A+ I+I+ A+HFGLA L+QLRGRVGR    +    L  
Sbjct: 840 KSGQADILVATTIVENGVDIPNANTILIDRADHFGLAALYQLRGRVGRWNRRAYAYFLVP 899

Query: 596 ---YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
                P L++     LS       G  +A  DL+ R  G+ILG++QSG
Sbjct: 900 NLRVMPELTRKRLQALSEASGYGSGMKVAMRDLEIRGAGDILGLEQSG 947


>gi|15612632|ref|NP_240935.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans
           C-125]
 gi|10172681|dbj|BAB03788.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans
           C-125]
          Length = 1181

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 145/429 (33%), Positives = 227/429 (52%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R   +  E +A  +  L   ++  K  G     +G    +   + P+  T+ Q 
Sbjct: 573 DWKKVKRRVQSSVEDIADDLIKLYAEREASK--GFAFAPDGPEQAEFEASFPYQETEDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  I+ P  ILAQQH+
Sbjct: 631 RAIQEIKEDMEKERPMDRLLCGDVGYGKTEVAIRAAFKAIMNGKQVAILVPTTILAQQHF 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I++   +  I + +++    +  + + L+ +  G   +++GTH L    +Q+  L L+
Sbjct: 691 ETIQERFADYPINIGVLSRFRSRKEQSQTLKGLKAGSVDLVVGTHRLLSKDVQFKDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 751 IVDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 810

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++  N   + E IER    LS G + Y++  ++E     N   +    + L      
Sbjct: 811 QTYVVEYNSPLVREAIER---ELSRGGQVYFLYNRVE-----NIERMANEISMLVPDARV 862

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S A  HG+M + + ES+M +F  G   +L+ TT+IE G+D+ + + +II  A+  GL+QL
Sbjct: 863 SFA--HGQMKESELESIMLAFLEGESDVLVTTTIIETGVDIPNVNTLIIHGADKMGLSQL 920

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +Q+RGRVGR   ++     Y     LS+ +  RL  +K  TE   GF IA  DL  R  G
Sbjct: 921 YQIRGRVGRSNRVAYAYFTYQRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLAIRGAG 980

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 981 NLLGAQQHG 989


>gi|224540214|ref|ZP_03680753.1| hypothetical protein BACCELL_05127 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518176|gb|EEF87281.1| hypothetical protein BACCELL_05127 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1131

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 144/410 (35%), Positives = 220/410 (53%), Gaps = 19/410 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   +V+  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 532 LIRLYSQRREEKGFQFSVDSFLQRELEASFIYEDTPDQSKATADVKADMESNRPMDRLVC 591

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  K   ++    VE ++   
Sbjct: 592 GDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKDRLKDLPCKVEYLSRAR 651

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  ++ +A G  +I+IGTH +    IQ+  L L+I+DE+ +FGV  + KL Q   
Sbjct: 652 TAAQAKAVIKGLAAGDVNILIGTHRILGKDIQFKDLGLLIIDEEQKFGVSVKEKLRQLKV 711

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I   P  R PI+T +   N  +EVI + +   
Sbjct: 712 NVDTLTMTATPIPRTLQFSLIGARDLSVIQTPPPNRYPIQTEVHTFN--EEVIADAINFE 769

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + + +  +I    E   ++++ER      H     IAI HG+M   + E ++  F
Sbjct: 770 MSRNGQVFLVNNRISNLPE--LKAMIER------HIPDCRIAIGHGQMEPTELEKIIFGF 821

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +LIATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 822 VNYDYDVLIATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 880

Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PPLS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 881 PPLSSLTPEARRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 930


>gi|260577719|ref|ZP_05845654.1| transcription-repair coupling factor [Corynebacterium jeikeium ATCC
            43734]
 gi|258604114|gb|EEW17356.1| transcription-repair coupling factor [Corynebacterium jeikeium ATCC
            43734]
          Length = 1243

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/429 (31%), Positives = 224/429 (52%), Gaps = 19/429 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +AG++  L   +Q     G     +    +++    PF+ T+ Q 
Sbjct: 618  DWKNTKRKARGAVREIAGELVQLYASRQAAP--GYAFAADTPWQREMEDAFPFTETEDQY 675

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ +  DM +   M R++ GDVG GKT VA+ A   AV++G Q  ++ P  +LAQQHY
Sbjct: 676  NAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQHY 735

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  Q+    ++ ++     A  +K +  +A G   I+IGTH L Q  + +  L L+
Sbjct: 736  NTFSERMQDFPTTIKELSRFTTPAESKKVIAGMADGTVDIVIGTHRLLQTGVHWKNLGLI 795

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 796  IVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 855

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
             T  +       V   ++  L    + +++  ++   E+  ++ R +V           +
Sbjct: 856  LT-YVGAQEDKHVAAAIRRELLRDGQVFYVHNKVRSIEQTAADIRRLVPE---------A 905

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HG+MS+   E+ +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QL
Sbjct: 906  RVVVAHGQMSEEQLETTVKGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 965

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G
Sbjct: 966  HQLRGRVGRSRERGYAYFLYPKGEVLTETSYDRLTTIAQNNDLGAGMAVAMKDLEMRGAG 1025

Query: 632  EILGIKQSG 640
             +LG +QSG
Sbjct: 1026 NVLGAEQSG 1034


>gi|118578938|ref|YP_900188.1| transcription-repair coupling factor [Pelobacter propionicus DSM
            2379]
 gi|118501648|gb|ABK98130.1| transcription-repair coupling factor [Pelobacter propionicus DSM
            2379]
          Length = 1177

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 156/490 (31%), Positives = 261/490 (53%), Gaps = 40/490 (8%)

Query: 220  WT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            W  S  + R A +EL AG++  +  ++Q  +  G   +   ++ ++   +  +  T  Q 
Sbjct: 580  WEKSKGKARKAIEEL-AGELLEIYAKRQICE--GFSFSPPDEMYREFEASFAWEETPDQL 636

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI D+L DM     M R++ GDVG GKT VAL     A   G Q  ++ P  ILAQQH+
Sbjct: 637  SAINDVLADMQHSRPMDRLVCGDVGYGKTEVALRGAFKAALDGKQVGVLVPTTILAQQHF 696

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + VE ++       ++  LER+  G+  I+IGTH L Q  + +  L L+
Sbjct: 697  ETFHERLKEYPVRVEALSRFRTPKEQKAILERLKKGEIDIVIGTHRLLQKDVAFKDLGLL 756

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L        V+ +TATPIPRTL ++ +G  D+S I   P  R  +
Sbjct: 757  IIDEEQRFGVKDKERLKAFRAVVDVMTLTATPIPRTLYMSMMGIRDLSIIDTPPVDRLAV 816

Query: 459  KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            KT+   + R  E + R  ++  L  G + +++  +++   K+     ++V          
Sbjct: 817  KTI---VARFSEELVREAIMRELRRGGQVFFVHNRVQTIAKRAELIAALVPE-------- 865

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA+ HG+M + + E VM  F +G   LLI TT+IE G+D+ +A+ +I+++A+ FGL+
Sbjct: 866  -AKIAVGHGQMGEQELEKVMLGFMHGETNLLICTTIIESGLDIPNANTLIVDHADRFGLS 924

Query: 575  QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
            QL+QLRGRVGR  +     LL      L+ ++  RL +L++  +   GF IA  D++ R 
Sbjct: 925  QLYQLRGRVGRSSQRGYAYLLIPGEGSLTSDARERLKILQDISELGAGFRIATHDMEIRG 984

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ-DPDL----------TSV 676
             G++LG +QSG    +    EL++ +LE  I R   + ++ Q +P++          T V
Sbjct: 985  AGDMLGSRQSGT--VIEIGFELYNQMLEETICRMRGEEMIEQVEPEINLKVPAFIPETYV 1042

Query: 677  RGQSIRILLY 686
            R    R+++Y
Sbjct: 1043 RDTGQRLVIY 1052


>gi|294505877|ref|YP_003569935.1| transcription-repair coupling factor [Salinibacter ruber M8]
 gi|294342205|emb|CBH22983.1| Transcription-repair coupling factor [Salinibacter ruber M8]
          Length = 1298

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 141/379 (37%), Positives = 213/379 (56%), Gaps = 18/379 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q  A K + +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P 
Sbjct: 731  FEDTPDQAEATKAVKRDMEEPVPMDRLVCGDVGFGKTEVAVRAAFKAVQDGKQVAMLVPT 790

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             ILAQQH++   +  +   + VE+++    +  + K LE++  GQ  I+IGTH +  D I
Sbjct: 791  TILAQQHHDTFSERMERFPVNVEVLSRFRSRTEQSKVLEKLEKGQVDILIGTHRITSDDI 850

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L L++VDE+ RFGV+ + KL +   A   L +TATPIPRTL  + LG  D+S I  
Sbjct: 851  TFDDLGLLVVDEEQRFGVKTKEKLRKMREAIDTLTLTATPIPRTLQFSLLGARDLSLIET 910

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             P  R+PI T    I+  DE + R  +V   S G + ++I  +++   E     V E   
Sbjct: 911  PPPNRQPINT---EIHTFDEDVIRDAIVYETSRGGQVFFIHNRVKTIHE-----VAEMVR 962

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            ++  +    + + HG+MS  + E VM  F N    +L++T++IE G+D+ +A+ +II +A
Sbjct: 963  AMVPNV--RVGVGHGQMSASELEDVMLDFVNEKLDVLVSTSIIENGLDISNANTMIINHA 1020

Query: 569  -EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622
             EHFGL++LHQLRGRVGR +  + C LL      L+ ++  RL  ++   D   GF IA 
Sbjct: 1021 GEHFGLSELHQLRGRVGRSQRKAFCHLLVPSVHGLTDDARERLKAVEQFSDLGSGFDIAM 1080

Query: 623  EDLKQRKEGEILGIKQSGM 641
             DL  R  G +LG +QSG 
Sbjct: 1081 RDLDIRGAGSLLGAEQSGF 1099


>gi|288554664|ref|YP_003426599.1| transcription-repair coupling factor [Bacillus pseudofirmus OF4]
 gi|288545824|gb|ADC49707.1| transcription-repair coupling factor (TRCF) [Bacillus pseudofirmus
           OF4]
          Length = 1180

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 212/378 (56%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  A+++I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  I+ P
Sbjct: 623 PYQETEDQIRAVEEIKEDMEKERPMDRLLCGDVGYGKTEVAIRAAFKAIMDGKQVAILVP 682

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE IK+   +  I + +++    +  + + L+ +  G   +I+GTH L    
Sbjct: 683 TTILAQQHYETIKERFSDFPINIGVLSRFRSRKEQTETLKGLKAGSVDLIVGTHRLLSKD 742

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I +  L L+IVDE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 743 IVFKDLGLLIVDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMLGVRDLSVIE 802

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T ++  N   I E IER    L+ G + Y++  ++E     +   + E+ 
Sbjct: 803 TPPENRFPVQTYVVEYNASLIREAIER---ELTRGGQVYFLYNRVE-----DIERMTEQI 854

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           + L      S A  HG+M++ + ES+M  F  G   +L+ TT+IE G+D+ + + +II +
Sbjct: 855 SMLVPDAKVSFA--HGQMNERELESIMLDFLEGNSDVLVTTTIIETGVDIPNVNTLIIND 912

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+Q+RGRVGR   ++     Y     L++ +  RL  +K  TE   GF IA 
Sbjct: 913 ADKMGLSQLYQIRGRVGRSNRVAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAM 972

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G +LG +Q G
Sbjct: 973 RDLTIRGAGNLLGAQQHG 990


>gi|315499869|ref|YP_004088672.1| transcription-repair coupling factor [Asticcacaulis excentricus CB
            48]
 gi|315417881|gb|ADU14521.1| transcription-repair coupling factor [Asticcacaulis excentricus CB
            48]
          Length = 1168

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 161/479 (33%), Positives = 255/479 (53%), Gaps = 35/479 (7%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
            RKAK       A+E+L   E+  G I L   R     ++G  I+    +  +     P+ 
Sbjct: 573  RKAK-------AKEKLR--EMADGLIQLAAARAL---KVGQQIDPPSGLYDEFCAQFPYE 620

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T+ Q +AI D+L D+S+ + M R++ GDVG GKT VAL A      +G Q  I+ P  +
Sbjct: 621  ETEDQLNAIHDVLDDLSKGHPMDRLICGDVGFGKTEVALRAAFVVAMSGQQVAIICPTTL 680

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QH++   +  Q   I V  ++  + +    +  + +  G+  ++IGTHAL  + + +
Sbjct: 681  LARQHFKTFSQRFQGWPIRVRHLSRMVTRKEADETRDGLKSGEVEVVIGTHALLSEQVGF 740

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L LVIVDE+  FGV+ + KL       H+L ++ATPIPRTL +   G  ++S I   P
Sbjct: 741  KDLGLVIVDEEQHFGVKHKEKLKAFRADVHMLTLSATPIPRTLQMALSGIREMSIIATPP 800

Query: 453  AGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
              R  ++T ++P +   I E + R K     G +AY++ P++++  +      +ERF  L
Sbjct: 801  VDRLAVRTYVLPFDAVSIREALLREKY---RGGQAYYVVPRLKDLPD------LERF--L 849

Query: 511  HEHFTSSIAII-HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
             E       I+ HG+M+    E VM +F +G   +L+ATT++E G+DV  A+ +I+  A+
Sbjct: 850  REQVPEVKFIVGHGQMTPTQLEEVMTAFYDGQYDVLLATTIVESGLDVPTANTLIVHRAD 909

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEED 624
             FGLAQL+Q+RGRVGR +  +   L   P   LS+ S  RL VL++ ++   GF +A  D
Sbjct: 910  MFGLAQLYQIRGRVGRSKTRAFAYLTTQPHQILSEASEKRLKVLQSLDNLGAGFQLASHD 969

Query: 625  LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            L  R  G +LG +QSG  + +    EL+  +LE A  + +     D   T  RG S +I
Sbjct: 970  LDIRGGGNLLGNEQSGHIREIGV--ELYQQMLEDAVNELRS--RADEPATDNRGWSPQI 1024


>gi|53723684|ref|YP_103135.1| transcription-repair coupling factor [Burkholderia mallei ATCC 23344]
 gi|121600246|ref|YP_993304.1| transcription-repair coupling factor [Burkholderia mallei SAVP1]
 gi|52427107|gb|AAU47700.1| transcription-repair coupling factor [Burkholderia mallei ATCC 23344]
 gi|121229056|gb|ABM51574.1| transcription-repair coupling factor [Burkholderia mallei SAVP1]
          Length = 1157

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 154/432 (35%), Positives = 226/432 (52%), Gaps = 25/432 (5%)

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 595  KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 654

Query: 324  AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
              +++P  +LA+QH +       +  + +  ++          A+ +I  G   I+IGTH
Sbjct: 655  VALLSPTTLLAEQHTQTFADRFADWPVRIAELSRFKTAKEVNAAIAQINEGSVDIVIGTH 714

Query: 384  ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
             L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  
Sbjct: 715  KLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLR 774

Query: 444  DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESN 499
            D S I   P  R  IKT    + R +E + R  ++  L  G + Y++  ++E  E +++ 
Sbjct: 775  DFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAM 831

Query: 500  FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
               +V           + I I HG+M + + E VM  F      +L+ TT+IE GIDV  
Sbjct: 832  LEELVPE---------ARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPS 882

Query: 560  ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
            A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+ 
Sbjct: 883  ANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEEL 942

Query: 617  --GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
              GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT
Sbjct: 943  GSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLT 998

Query: 675  SVRGQSIRILLY 686
            +    +  I L+
Sbjct: 999  APLAATTEINLH 1010


>gi|266619807|ref|ZP_06112742.1| transcription-repair coupling factor [Clostridium hathewayi DSM
           13479]
 gi|288868593|gb|EFD00892.1| transcription-repair coupling factor [Clostridium hathewayi DSM
           13479]
          Length = 1178

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 209/377 (55%), Gaps = 15/377 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  AI     DM  +  M R++ GDVG GKT +AL A   AV+   Q V + P
Sbjct: 628 PYEETEDQLDAIDSTKSDMESRKIMDRLICGDVGYGKTEIALRAAFKAVQDEKQVVYLVP 687

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHY    +  ++  + V++++     +  +K LE +  G   I+IGTH +    
Sbjct: 688 TTILAQQHYNTFVQRMKDFPVRVDLMSRFRTPSQVKKTLEDLKRGLVDIVIGTHRVLSKD 747

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +Q+  L L+I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ +G  D+S + 
Sbjct: 748 VQFKDLGLLIIDEEQRFGVAHKEKIKKLKENIDVLTLTATPIPRTLHMSLVGIRDMSVLE 807

Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           E P  R PI+T ++  N  DE++ E +   LS G + Y++  ++     SN   V     
Sbjct: 808 EPPVDRMPIQTYVMEYN--DEMVREAINRELSRGGQVYYVYNRV-----SNIDEVAGHIA 860

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           SL    T + A  HG+M + + E +M  F NG   +L+ TT+IE G+D+ +A+ +II++A
Sbjct: 861 SLVPEATVTFA--HGQMHEHELERIMFDFVNGEIDVLVCTTIIETGLDIPNANTMIIQDA 918

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623
           +  GL+QL+QLRGRVGR    S   L+Y     L + +  RL  ++  TE   G  IA  
Sbjct: 919 DRMGLSQLYQLRGRVGRSSRTSYAFLMYKRDKMLREEAEKRLQAIREFTELGSGIKIAMR 978

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G +LG +Q G
Sbjct: 979 DLEIRGAGNVLGAEQHG 995


>gi|300812086|ref|ZP_07092534.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496925|gb|EFK31999.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 1158

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 140/430 (32%), Positives = 224/430 (52%), Gaps = 19/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    +   A  E +A  +  L  +++ +K  G   + +G          P+ PT  Q 
Sbjct: 557 EWAKTKKRVAARVEDIADDLIDLYAKREAEK--GFAFSPDGSDQAAFEAAFPYEPTPDQL 614

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A  +I  DM +   M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQHY
Sbjct: 615 RATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHY 674

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + IK   +   + +   +    QA  +K +  +  G   +++GTH +    +Q+  L L+
Sbjct: 675 QTIKDRFKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQFKDLGLL 734

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + KL Q  T   VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 735 IIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPI 794

Query: 459 KTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++      + E  +R    +  G + +++  ++ + +E+     V R   L     +
Sbjct: 795 QTYVLEQLPGTVKEACQR---EMQRGGQVFYLHNRVGDIEET-----VARLEQLLPE--A 844

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HG+MS+   E ++  F +    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL
Sbjct: 845 RIAYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 904

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY P   L++    RL  +++  +   GF IA  DL  R  G
Sbjct: 905 YQLRGRIGRSVRLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDLSIRGAG 964

Query: 632 EILGIKQSGM 641
            +LG +Q G 
Sbjct: 965 NMLGAQQHGF 974


>gi|166031178|ref|ZP_02234007.1| hypothetical protein DORFOR_00864 [Dorea formicigenerans ATCC
           27755]
 gi|166029025|gb|EDR47782.1| hypothetical protein DORFOR_00864 [Dorea formicigenerans ATCC
           27755]
          Length = 1114

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 143/432 (33%), Positives = 236/432 (54%), Gaps = 25/432 (5%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-PFSPTKS 276
           EWT + A+ R A  E+    + L   R+    + G  +  E  + QK    + P+  T+ 
Sbjct: 513 EWTKTKAKVRGAVKEIAKDLVELYAARQN---QDGF-VYGEDTVWQKEFEEMFPYEETED 568

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  AI  + +DM     M R++ GDVG GKT +A+ A   AV+   Q V + P  ILAQQ
Sbjct: 569 QLLAINAVKKDMESHKIMDRLICGDVGYGKTEIAIRAAFKAVQENKQVVYLVPTTILAQQ 628

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY    +  ++  + V+++      A +R  ++ +  G   I++GTH +  D I+Y  L 
Sbjct: 629 HYNTFCQRMKDFPVRVDLMCRFRTPAQQRDTIQNLKRGLVDIVVGTHRVLSDDIEYKDLG 688

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+I+DE+ RFGVQ + K+ +      VL +TATPIPRTL ++ +G  D+S + E P  R 
Sbjct: 689 LLIIDEEQRFGVQHKEKIKKLKKNVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPQDRL 748

Query: 457 PIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKE--SNFRSVVERFNSLHEH 513
           PI+T ++  N  DE++ E ++   +   + Y++  ++E+  E  ++ + +V   N     
Sbjct: 749 PIQTYVMEYN--DEMVREAIERECARNGQVYYVYNRVEDIAEVTAHIQKLVPELN----- 801

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               ++  HG+M + + E +M  F NG   +L++TT+IE G+D+ + + +II +A+  GL
Sbjct: 802 ----VSFAHGQMKEHELEKIMYDFINGDIDVLVSTTIIETGLDISNVNTMIIHDADRLGL 857

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           +QL+QLRGRVGR   ++   LLY     L + +  RL+ ++   D   GF IA  DL+ R
Sbjct: 858 SQLYQLRGRVGRSGRMAYAFLLYRKDKLLKEIAEKRLAAIREFTDLGSGFKIAMRDLEIR 917

Query: 629 KEGEILGIKQSG 640
             G +LG +Q G
Sbjct: 918 GAGNLLGAEQHG 929


>gi|312880022|ref|ZP_07739822.1| transcription-repair coupling factor [Aminomonas paucivorans DSM
           12260]
 gi|310783313|gb|EFQ23711.1| transcription-repair coupling factor [Aminomonas paucivorans DSM
           12260]
          Length = 1041

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 138/408 (33%), Positives = 220/408 (53%), Gaps = 19/408 (4%)

Query: 242 LMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+  Q ++EI  G P     +    +L   P+  T+ Q  A ++I +DM +   M R+L 
Sbjct: 482 LLEAQARREISEGFPFPPLREETALLLDTFPYRETEDQIRAWEEIREDMERPVPMDRLLV 541

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT +AL A   A   G Q  ++ P  +LA QH +  +       + VE+++   
Sbjct: 542 GDVGFGKTELALRAAFKAAMGGKQVALITPTTLLAHQHGQTFRDRLSPFPLRVEVLSRFR 601

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            +A +++ L  +A G+  ++IGTH L    +++ ++ L+IVDE+HRFGV  + K      
Sbjct: 602 TEAEQKEVLGALAEGKVDVVIGTHRLLSGDVRFARMGLLIVDEEHRFGVLHKEKWRAAFP 661

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  VLL++ATPIPRTL L   G  D+S +   P  R+P+ TV+ P +   E + R  V+ 
Sbjct: 662 AADVLLLSATPIPRTLHLALGGYRDLSVLATPPHHRRPVLTVVSPWS---ESLVRGAVLR 718

Query: 480 --SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
             + G + +W+  +I+   +   R +   F +L       + + HGRM + + E VM  F
Sbjct: 719 EKARGGQVFWVHNRIQSIHKQALR-LRRLFPNLR------LEVAHGRMKERELEEVMGRF 771

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY- 596
             G   LL+ TT+IE G+D+  A+ +++++A   GLAQLHQLRGRVGR EE +    LY 
Sbjct: 772 VEGKTDLLLCTTIIESGLDLPRANTLVVDDAHDLGLAQLHQLRGRVGRREEQAFAFFLYP 831

Query: 597 -HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
               LS+ +  RL  +   ++   G  +A  DL  R  G+++G+ Q G
Sbjct: 832 ERAELSREARDRLEAIAELDELGGGLQLARRDLAIRGGGDLMGLLQHG 879


>gi|145295117|ref|YP_001137938.1| hypothetical protein cgR_1060 [Corynebacterium glutamicum R]
 gi|140845037|dbj|BAF54036.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1214

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 138/414 (33%), Positives = 219/414 (52%), Gaps = 19/414 (4%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +AG++  L  ++Q     G P   +    +++  N P+  T+ Q  AI  + +DM +   
Sbjct: 600  IAGELVELYAKRQSAP--GHPFAPDTPWQKEMEDNFPYVETEDQMLAIDAVKEDMEKSVP 657

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH    ++      + ++
Sbjct: 658  MDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQSTFEERMTGFPVTIK 717

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
             ++     A  R+ L  +A G   I+IGTH L Q  +Q+  L LVIVDE+ RFGV+ +  
Sbjct: 718  GLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEH 777

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
            +    T   VL M+ATPIPRTL ++  G  +++ +   P  R PI T + P     +V  
Sbjct: 778  IKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTYVGPYED-KQVAA 836

Query: 474  RLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
             ++  L    + ++I  ++   EKK    R +V           + + + HG+MS+   E
Sbjct: 837  SIRRELLRDGQVFFIHNKVADIEKKAREIRDLVPE---------ARVVVAHGQMSEELLE 887

Query: 532  SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
              +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQLRGRVGR  E   
Sbjct: 888  QTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGY 947

Query: 592  CILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
               LY     L++ SY RL+ +    D   G  +A +DL+ R  G +LG +QSG
Sbjct: 948  AYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSG 1001


>gi|153814527|ref|ZP_01967195.1| hypothetical protein RUMTOR_00741 [Ruminococcus torques ATCC 27756]
 gi|317500570|ref|ZP_07958791.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145848021|gb|EDK24939.1| hypothetical protein RUMTOR_00741 [Ruminococcus torques ATCC 27756]
 gi|316898003|gb|EFV20053.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 1115

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 210/373 (56%), Gaps = 15/373 (4%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  AI+D   DM  K  M R++ GDVG GKT +A+ A   AV+ G Q V + P  IL
Sbjct: 570 TDDQLQAIEDTKHDMESKKIMDRLICGDVGYGKTEIAIRAAFKAVQEGKQVVCLVPTTIL 629

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY    +  +   + ++++      A ++K +E    G   I++GTH +    + + 
Sbjct: 630 AQQHYNTFVQRLKEFPVRIDLLCRFRSAAEQKKTIEDTKKGFVDILVGTHRVLSKDVVFK 689

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ +G  D+S + E P 
Sbjct: 690 DLGLLIIDEEQRFGVTHKEKIKKLKENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPN 749

Query: 454 GRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            R PI+T ++  N  DE++ E +   L+   + Y++  ++     ++   V  R  SL  
Sbjct: 750 ERMPIQTYVMEYN--DEMVREAITRELARDGQVYYVYNRV-----NDIADVAGRIQSLVP 802

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +++A  HG+M + + E +M  F NG   +L++TT+IE G+D+ +A+ +II++A+ FG
Sbjct: 803 D--ANVAFAHGQMKERELEDIMYDFINGDIDVLVSTTIIETGLDIPNANTMIIQDADRFG 860

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
           L+QL+QLRGRVGR   ++   LLY     L + +  RLS ++   D   G  IA  DL+ 
Sbjct: 861 LSQLYQLRGRVGRSNRMAYAFLLYQRDKLLKEVAEKRLSAIREFTDLGSGIKIAMRDLEI 920

Query: 628 RKEGEILGIKQSG 640
           R  G +LG  QSG
Sbjct: 921 RGAGNLLGEAQSG 933


>gi|19552188|ref|NP_600190.1| transcription-repair coupling factor [Corynebacterium glutamicum ATCC
            13032]
          Length = 1214

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/414 (33%), Positives = 219/414 (52%), Gaps = 19/414 (4%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +AG++  L  ++Q     G P   +    +++  N P+  T+ Q  AI  + +DM +   
Sbjct: 600  IAGELVELYAKRQSAP--GHPFAPDTPWQKEMEDNFPYVETEDQMLAIDAVKEDMEKSVP 657

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH    ++      + ++
Sbjct: 658  MDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQSTFEERMTGFPVTIK 717

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
             ++     A  R+ L  +A G   I+IGTH L Q  +Q+  L LVIVDE+ RFGV+ +  
Sbjct: 718  GLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEH 777

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
            +    T   VL M+ATPIPRTL ++  G  +++ +   P  R PI T + P     +V  
Sbjct: 778  IKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTYVGPYED-KQVAA 836

Query: 474  RLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
             ++  L    + ++I  ++   EKK    R +V           + + + HG+MS+   E
Sbjct: 837  SIRRELLRDGQVFFIHNKVADIEKKAREIRDLVPE---------ARVVVAHGQMSEELLE 887

Query: 532  SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
              +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQLRGRVGR  E   
Sbjct: 888  QTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGY 947

Query: 592  CILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
               LY     L++ SY RL+ +    D   G  +A +DL+ R  G +LG +QSG
Sbjct: 948  AYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSG 1001


>gi|78184749|ref|YP_377184.1| transcription-repair coupling factor [Synechococcus sp. CC9902]
 gi|78169043|gb|ABB26140.1| Transcription-repair coupling factor [Synechococcus sp. CC9902]
          Length = 1192

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/422 (32%), Positives = 228/422 (54%), Gaps = 22/422 (5%)

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            G     +G    ++  + P+ PT  Q  +  D+ +DM +   M R++ GDVG GKT VA+
Sbjct: 601  GFAFPPDGPWQTELEESFPYEPTPDQLKSTTDVKRDMERAEPMDRLVCGDVGFGKTEVAI 660

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A+  A+ AG Q  ++AP  +LAQQH+  + +      I V ++        R+  LE +
Sbjct: 661  RAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTTTERKSILEGL 720

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
              G    ++GTH L   S  + +L L++VDE+ RFGV Q+ K+        VL ++ATPI
Sbjct: 721  KQGTIDAVVGTHQLLSKSTSFQQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPI 780

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            PRTL ++  G  ++S IT  P  R+PIKT +  ++  + V   ++  L  G + +++ P+
Sbjct: 781  PRTLYMSLSGVREMSLITTPPPLRRPIKTHLASLD-PEAVRSAIRQELDRGGQVFYVVPR 839

Query: 492  IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +E  E   +  R+++     L         + HG+M++ + ES M +F  G   +++ TT
Sbjct: 840  VEGIEDVANGLRTMLPGLKLL---------VAHGQMAEGELESAMVAFNAGEADVMLCTT 890

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYT 606
            ++E G+D+   + I+IE+A  FGLAQL+QLRGRVGR   I +   L++P    LS N+  
Sbjct: 891  IVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGR-SGIQAHAWLFYPGNASLSDNARQ 949

Query: 607  RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660
            RL  ++       G+ +A  D++ R  G +LG++QSG  +   F +    L +SL EI  
Sbjct: 950  RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQG 1009

Query: 661  KD 662
            +D
Sbjct: 1010 QD 1011


>gi|88808865|ref|ZP_01124374.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805]
 gi|88786807|gb|EAR17965.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805]
          Length = 1180

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/422 (32%), Positives = 227/422 (53%), Gaps = 22/422 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G    V+G    ++  + P+ PT  Q  A  ++ +DM +   M R++ GDVG GKT VA+
Sbjct: 589 GFAFPVDGPWQTELEESFPYEPTPDQLKATAEVKRDMEKSQPMDRLVCGDVGFGKTEVAI 648

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A+  A+ AG Q  ++AP  +LAQQH+  + +      I V ++        R+  LE +
Sbjct: 649 RAIFKAITAGRQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTAGERKSILEGL 708

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G    ++GTH L   S  + KL L++VDE+ RFGV Q+ K+        VL ++ATPI
Sbjct: 709 KKGTIDAVVGTHQLLSKSTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPI 768

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL ++  G  ++S IT  P  R+PIKT +  ++  + +   ++  L  G + +++ P+
Sbjct: 769 PRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDE-EAIRSAIRQELDRGGQVFYVVPR 827

Query: 492 IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +E  E      R ++     L         + HG+M++ + ES M +F  G   +++ TT
Sbjct: 828 VEGIEDVAGQLRQMLPGLKLL---------VAHGQMAEGELESAMVAFNGGEADVMLCTT 878

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYT 606
           ++E G+D+   + I+IE+A  FGLAQL+QLRGRVGR   I +   L++P    LS+ +  
Sbjct: 879 IVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGR-SGIQAHAWLFYPGNASLSEAARQ 937

Query: 607 RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660
           RL  ++       G+ +A  D++ R  G +LG++QSG  +   F +    L +SL EI  
Sbjct: 938 RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQG 997

Query: 661 KD 662
           +D
Sbjct: 998 QD 999


>gi|302205849|gb|ADL10191.1| transcription-repair coupling factor [Corynebacterium
            pseudotuberculosis C231]
 gi|302330407|gb|ADL20601.1| transcription-repair coupling factor [Corynebacterium
            pseudotuberculosis 1002]
 gi|308276083|gb|ADO25982.1| transcription-repair coupling factor [Corynebacterium
            pseudotuberculosis I19]
          Length = 1264

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 140/429 (32%), Positives = 224/429 (52%), Gaps = 19/429 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G P   +     ++  N P+  T+ Q 
Sbjct: 599  DWKNTKKKARAAVREIAGELVELYAKRQSAP--GHPFAPDSPWQYEMEDNFPYVETEDQM 656

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+ +  DM +   M R++ GDVG GKT VA+ A   AV+ G Q V++ P  +LAQQH 
Sbjct: 657  MAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVVLVPTTLLAQQHL 716

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + +  ++        ++ ++ +A G   I+IGTH L Q  IQ+  L LV
Sbjct: 717  STFDERMAGFPVNLRGLSRFTSTVEAKETIKGLADGTVDIVIGTHRLLQTGIQWKNLGLV 776

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 777  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPI 836

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
             T  +      ++   ++  L    + +++  ++   EKK  + R +V           +
Sbjct: 837  LT-YVGAQEDKQIAAAIRRELLRDGQVFFVHNKVSDIEKKARDLRELVPE---------A 886

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             I + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QL
Sbjct: 887  RIVVAHGQMSEELLEQTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 946

Query: 577  HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR  E      LY     L++NSY RL+ +    D   G  +A +DL+ R  G
Sbjct: 947  HQLRGRVGRSRERGYAYFLYPKGQTLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 1006

Query: 632  EILGIKQSG 640
             +LG +QSG
Sbjct: 1007 NVLGAQQSG 1015


>gi|302876604|ref|YP_003845237.1| transcription-repair coupling factor [Clostridium cellulovorans
           743B]
 gi|307687278|ref|ZP_07629724.1| transcription-repair coupling factor [Clostridium cellulovorans
           743B]
 gi|302579461|gb|ADL53473.1| transcription-repair coupling factor [Clostridium cellulovorans
           743B]
          Length = 1173

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 144/430 (33%), Positives = 233/430 (54%), Gaps = 21/430 (4%)

Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  +  + R + +E+    + L   R+  K   G   + +    Q+     P+  T  Q
Sbjct: 577 EWQKAKTKARNSINEIAQDLVKLYATREAVK---GYSFSKDTTWQQQFEAEFPYEETPDQ 633

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            SAI++I  DM +   M R+L GDVG GKT VA+ A   AV  G QA  + P  ILA+QH
Sbjct: 634 ISAIEEIKVDMEKNKPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQAAFLVPTTILAEQH 693

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+ +KK      + +++I+       +++ L+ +  G   IIIGTH +   ++Q+  L L
Sbjct: 694 YKTLKKRFTGFPVNIDMISRFRSATQQKETLKSLKEGNVDIIIGTHKILGKTVQFKDLGL 753

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV  + K+        VL ++ATPIPRTL ++  G   IS I   P  R P
Sbjct: 754 LIVDEEQRFGVSHKEKIKNAKKNIDVLTLSATPIPRTLNMSLTGVRSISVIETPPEERYP 813

Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           ++T ++  N  D++I    L+ +  +G + +++  ++E     N R + +    L     
Sbjct: 814 VQTYVVEYN--DQLIRDAVLREINRKG-QVFFVFNRVE-----NIREIADSLAHLIPE-- 863

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I + HG+M++ + E VM +F N    +L++TT+IE GID+ +A+ +II +A+  GL+Q
Sbjct: 864 ARIIVAHGQMAEKELEEVMRAFMNQEYDILVSTTIIETGIDIQNANTMIIYDADKMGLSQ 923

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR   I+   L Y     +++ +  RL  +K+ TE   GF +A  DL+ R  
Sbjct: 924 LYQLRGRVGRTNRIAYAYLTYRKDKIITEVAKKRLKAIKDFTELGSGFKVALRDLEIRGA 983

Query: 631 GEILGIKQSG 640
           G ++G  Q G
Sbjct: 984 GNVMGSAQHG 993


>gi|170077902|ref|YP_001734540.1| transcription-repair coupling factor [Synechococcus sp. PCC 7002]
 gi|169885571|gb|ACA99284.1| Transcription-repair coupling factor (TRCF) [Synechococcus sp. PCC
           7002]
          Length = 1162

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 140/411 (34%), Positives = 225/411 (54%), Gaps = 18/411 (4%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + LL +  Q  +  GI    +    Q++  + P+  T  Q  A++DI +D+     M R+
Sbjct: 580 VDLLKIYAQRAEMKGITYPSDAPWQQEMEDSFPYQATPDQLKAVQDIKRDLESDRPMDRL 639

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           + GDVG GKT VA+ A+   V  G  Q  ++AP  IL QQHY  +K+      I + ++ 
Sbjct: 640 VCGDVGFGKTEVAIRAIFKVVTGGHKQVALLAPTTILTQQHYHTLKERFSPYPINIGLLN 699

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                + R+  LER+  G+  I++GT  L    +Q+  L L++VDE+ RFGV Q+ K+  
Sbjct: 700 RFRTASERKDILERLHKGELDIVVGTQQLLGKDVQFKDLGLLVVDEEQRFGVNQKEKIKA 759

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-L 475
             T   VL ++ATPIPRTL ++  G  ++S IT  P  R+PI+T +   N   E+I   +
Sbjct: 760 LKTKVDVLTLSATPIPRTLYMSLSGIREMSLITTPPPSRRPIQTHVSRHN--PEIIRTAI 817

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVM 534
           +  L  G + +++ P++E         +      L E   S+ +AI HG+M++ D E+ M
Sbjct: 818 RNELDRGGQIFYVVPRVE--------GIETIATQLQEMIPSARVAIAHGQMNEADLETTM 869

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F NG   +L+ TT++E G+D+   + II+E+A+ FGL+QL+QLRGRVGR    +   L
Sbjct: 870 LTFNNGEADILLCTTIVESGLDIPRVNTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWL 929

Query: 595 LY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           LY     L++ +  RL  L+       G+ +A  D++ R  G +LG +QSG
Sbjct: 930 LYPSKGELTEKARKRLRALQEFSQLGSGYQLAMRDMEIRGVGNLLGAEQSG 980


>gi|114768783|ref|ZP_01446409.1| transcription-repair coupling factor [alpha proteobacterium
           HTCC2255]
 gi|114549700|gb|EAU52581.1| transcription-repair coupling factor [alpha proteobacterium
           HTCC2255]
          Length = 1151

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 145/401 (36%), Positives = 229/401 (57%), Gaps = 24/401 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AI+D++ DMS    M R++ GDVG GKT VAL A   A  AG QA I+AP
Sbjct: 598 PYVETDDQLNAIEDVVSDMSSGKPMDRLICGDVGFGKTEVALRAAFIAASAGTQAAIIAP 657

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH++  ++  + T I V+ ++  +  +  +K  E +  G   IIIGTHAL    
Sbjct: 658 TTLLARQHFKSFEERFRGTGIRVKQLSRFVTTSQMKKNREALRDGAVEIIIGTHALLAKD 717

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ +FGV  + +L Q  +  HVL +TATPIPRTL L+  G  ++S I 
Sbjct: 718 IKFANLGLLIIDEEQKFGVGHKERLKQLRSDIHVLTLTATPIPRTLQLSLSGVRELSVIG 777

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  E      +E 
Sbjct: 778 TPPIDRLAIRTY---VSEFDTVTLR-EALLREHYRGGQSFFVVPRISDLPE------IEA 827

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  + E     +  + HG+M   + +  M++F +G   +L+ATT++E G+D+  A+ III
Sbjct: 828 F--IEEQVPEINHVVAHGQMPAGELDERMNAFYDGKFGILVATTIVESGLDIPTANTIII 885

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
             A+ FGL+QL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF++
Sbjct: 886 HRADMFGLSQLYQIRGRVGRSKTRAYAYLTTKPRQKLTHAAIKRLRVLGSLDSLGAGFML 945

Query: 621 AEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEI 658
           A +DL  R  G ILG +QSG  +   + + Q  L D++ +I
Sbjct: 946 ASQDLDIRGAGNILGEEQSGNVREVGYELYQEMLEDAIAKI 986


>gi|62389854|ref|YP_225256.1| transcription-repair coupling factor [Corynebacterium glutamicum ATCC
            13032]
 gi|41325189|emb|CAF19670.1| PUTATIVE TRANSCRIPTION-REPAIR COUPLING FACTOR [Corynebacterium
            glutamicum ATCC 13032]
          Length = 1217

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/414 (33%), Positives = 219/414 (52%), Gaps = 19/414 (4%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +AG++  L  ++Q     G P   +    +++  N P+  T+ Q  AI  + +DM +   
Sbjct: 603  IAGELVELYAKRQSAP--GHPFAPDTPWQKEMEDNFPYVETEDQMLAIDAVKEDMEKSVP 660

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH    ++      + ++
Sbjct: 661  MDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQSTFEERMTGFPVTIK 720

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
             ++     A  R+ L  +A G   I+IGTH L Q  +Q+  L LVIVDE+ RFGV+ +  
Sbjct: 721  GLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEH 780

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
            +    T   VL M+ATPIPRTL ++  G  +++ +   P  R PI T + P     +V  
Sbjct: 781  IKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTYVGPYED-KQVAA 839

Query: 474  RLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
             ++  L    + ++I  ++   EKK    R +V           + + + HG+MS+   E
Sbjct: 840  SIRRELLRDGQVFFIHNKVADIEKKAREIRDLVPE---------ARVVVAHGQMSEELLE 890

Query: 532  SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
              +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQLRGRVGR  E   
Sbjct: 891  QTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGY 950

Query: 592  CILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
               LY     L++ SY RL+ +    D   G  +A +DL+ R  G +LG +QSG
Sbjct: 951  AYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSG 1004


>gi|68536576|ref|YP_251281.1| transcription-repair coupling factor [Corynebacterium jeikeium K411]
 gi|68264175|emb|CAI37663.1| transcription-repair coupling factor [Corynebacterium jeikeium K411]
          Length = 1258

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 135/429 (31%), Positives = 224/429 (52%), Gaps = 19/429 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +AG++  L   +Q     G     +    +++    PF+ T+ Q 
Sbjct: 625  DWKNTKRKARGAVREIAGELVQLYASRQAAP--GYAFAADTPWQREMEDAFPFTETEDQY 682

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ +  DM +   M R++ GDVG GKT VA+ A   AV++G Q  ++ P  +LAQQHY
Sbjct: 683  NAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQHY 742

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  Q+    ++ ++     A  +K +  +A G   I+IGTH L Q  + +  L L+
Sbjct: 743  NTFSERMQDFPTTIKELSRFTTPAESKKVIAGMADGTVDIVIGTHRLLQTGVHWKNLGLI 802

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 803  IVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 862

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
             T  +       V   ++  L    + +++  ++   E+  ++ R +V           +
Sbjct: 863  LT-YVGAQEDKHVAAAIRRELLRDGQVFYVHNKVRSIEQTAADIRRLVPE---------A 912

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HG+MS+   E+ +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QL
Sbjct: 913  RVVVAHGQMSEEQLETTVKGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 972

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G
Sbjct: 973  HQLRGRVGRSRERGYAYFLYPKGEVLTETSYDRLTTIAQNNDLGAGMAVAMKDLEMRGAG 1032

Query: 632  EILGIKQSG 640
             +LG +QSG
Sbjct: 1033 NVLGAEQSG 1041


>gi|329666673|gb|AEB92621.1| transcription-repair coupling factor [Lactobacillus johnsonii DPC
           6026]
          Length = 1165

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 233/431 (54%), Gaps = 21/431 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   +   +  E +A  +  L  +++ +K  G   + +  + ++     P+  T  Q 
Sbjct: 563 EWTKTKKRVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKEFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM     M R+L GDVG GKT VAL A   A+  G Q   +AP  ILAQQH+
Sbjct: 621 RSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E ++   ++  +   +++     A  ++ +E +  G+  +++GTH L    +Q+  L L+
Sbjct: 681 ETMQDRFKDFPVNCALLSRFQTPAEVKEIVEGVKSGKIDMVVGTHRLLSKDVQFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IIDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T +  +  +  ++   + VL E K+    +++  +I+     +   VV +   L     
Sbjct: 801 QTYV--MEEMPSIVR--EAVLREMKRNGQVFFLHNRID-----DIDKVVSQLEELIPE-- 849

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +I+E+A+H+GL+Q
Sbjct: 850 AKIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYGLSQ 909

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGR+GR   ++    LY P   L++    RLS +++ TE   GF IA  DL  R  
Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGA 969

Query: 631 GEILGIKQSGM 641
           G +LG +Q G 
Sbjct: 970 GNMLGKQQHGF 980


>gi|302339041|ref|YP_003804247.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM
           11293]
 gi|301636226|gb|ADK81653.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM
           11293]
          Length = 1128

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 148/458 (32%), Positives = 251/458 (54%), Gaps = 24/458 (5%)

Query: 220 WTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           W S  AR R + ++L    I L   RK+  +    P + + ++  +     P+  T  Q 
Sbjct: 537 WESRKARVRKSVEDLADRLIKLYAKRKE-ARGFSFPEDTDWQV--EFEAEFPYQETADQL 593

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             I+++  DM     M R++ GDVG GKT VA+ A   AV AG Q   +AP  ILA+QHY
Sbjct: 594 RCIEEVKADMESDRPMDRLICGDVGYGKTEVAMRAAFKAVVAGKQVAFLAPTTILAEQHY 653

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E   +  +   + +++++  +P+  + + L  +  G   ++IGTH + Q  + +  L L+
Sbjct: 654 ENFCERFKRYPVKIDMVSRFVPKKKQHQILSALTEGSVDLLIGTHRILQKDVLFKNLGLI 713

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + +L +  T+   L ++ATPIPRTL ++ L   DIS +T  P  R+PI
Sbjct: 714 VIDEEQRFGVKDKERLKELRTSVDSLSLSATPIPRTLHMSLLKIRDISLLTTAPNNRRPI 773

Query: 459 KTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T    I   DE  V + ++  +  G + +++  ++E   +   R  +ER   + E F  
Sbjct: 774 ETT---IQEFDEELVAKAIRREMDRGGQVFFLHNRVETLPQ--VRRFLERL--IPEVF-- 824

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            + I HG+MS    E +M  F +G+ ++L+ATT+IE GID+ + + III+ A+ +G++QL
Sbjct: 825 -VEIAHGQMSSSQLEDIMHRFIHGSFQVLLATTIIENGIDIPNVNTIIIDRADMYGISQL 883

Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QLRGRVGR +  S   L Y     LS+ +  RL ++ +  +   GF IA +D++ R  G
Sbjct: 884 YQLRGRVGRSDRSSYAYLFYPEQRSLSEIAMKRLQIISDYTELGSGFKIAMKDMEVRGAG 943

Query: 632 EILGIKQSG---MPKFLIAQPELHDSLLEIARKDAKHI 666
            +LG +Q G      F +    L +++ E++R D + I
Sbjct: 944 NLLGRQQHGEILSVGFDMYLRILDEAVAEMSRGDGEEI 981


>gi|229917410|ref|YP_002886056.1| transcription-repair coupling factor [Exiguobacterium sp. AT1b]
 gi|229468839|gb|ACQ70611.1| transcription-repair coupling factor [Exiguobacterium sp. AT1b]
          Length = 1175

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/382 (35%), Positives = 215/382 (56%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P++ T+ Q  +I +I  DM +   M R+L GDVG GKT VA+ A   AV AG Q   +
Sbjct: 615 SFPYAETEDQVRSIAEIKADMERSRPMDRLLCGDVGYGKTEVAIRAAFKAVLAGKQVAFL 674

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHYE + +      I V +++    ++      + +  G   I++GTH +  
Sbjct: 675 VPTTVLAQQHYETMLERFSEFPINVSVMSRFRSKSEMTATKKGLKEGTIDIVVGTHRVLS 734

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             + +  L LVI+DE+ RFGV+ + +L Q  T   VL +TATPIPRTL ++ +G  D+S 
Sbjct: 735 KDVTFANLGLVIIDEEQRFGVKHKERLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSV 794

Query: 448 ITEKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503
           +   P  R P++T ++  + I   E +ER    L+ G +A+++  ++E  E+K    R++
Sbjct: 795 LETPPENRYPVQTYVMEYDGIVLREALER---ELARGGQAFFLYNRVEGIERKAEEIRAL 851

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +           + IA  HGRM++ + ES + SF  G   +L++TT+IE GID+ + + +
Sbjct: 852 LP---------DARIATAHGRMTESELESQLISFLEGEADILVSTTIIETGIDIPNVNTL 902

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGF 618
           I+ +A+  GL+QL+QLRGRVGR   I+     Y     L++ + +RL  +K  TE   GF
Sbjct: 903 IVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYRKDKRLTEVAESRLQAIKEFTELGSGF 962

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +QSG
Sbjct: 963 KIAMRDLSIRGAGNLLGAQQSG 984


>gi|42518364|ref|NP_964294.1| transcription-repair coupling factor [Lactobacillus johnsonii NCC
           533]
 gi|41582649|gb|AAS08260.1| transcription-repair coupling factor [Lactobacillus johnsonii NCC
           533]
          Length = 1165

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 233/431 (54%), Gaps = 21/431 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   +   +  E +A  +  L  +++ +K  G   + +  + ++     P+  T  Q 
Sbjct: 563 EWTKTKKRVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKEFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM     M R+L GDVG GKT VAL A   A+  G Q   +AP  ILAQQH+
Sbjct: 621 RSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E ++   ++  +   +++     A  ++ +E +  G+  +++GTH L    +Q+  L L+
Sbjct: 681 ETMQDRFKDFPVNCALLSRFQTPAEVKEIVEGVKSGKIDMVVGTHRLLSKDVQFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IIDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T +  +  +  ++   + VL E K+    +++  +I+     +   VV +   L     
Sbjct: 801 QTYV--MEEMPSIVR--EAVLREMKRNGQVFFLHNRID-----DIDKVVSQLEELIPE-- 849

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +I+E+A+H+GL+Q
Sbjct: 850 AKIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYGLSQ 909

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGR+GR   ++    LY P   L++    RLS +++ TE   GF IA  DL  R  
Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGA 969

Query: 631 GEILGIKQSGM 641
           G +LG +Q G 
Sbjct: 970 GNMLGKQQHGF 980


>gi|300858127|ref|YP_003783110.1| transcription-repair-coupling factor [Corynebacterium
            pseudotuberculosis FRC41]
 gi|300685581|gb|ADK28503.1| transcription-repair-coupling factor [Corynebacterium
            pseudotuberculosis FRC41]
          Length = 1265

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 140/429 (32%), Positives = 224/429 (52%), Gaps = 19/429 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G P   +     ++  N P+  T+ Q 
Sbjct: 600  DWKNTKKKARAAVREIAGELVELYAKRQSAP--GHPFAPDSPWQYEMEDNFPYVETEDQM 657

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+ +  DM +   M R++ GDVG GKT VA+ A   AV+ G Q V++ P  +LAQQH 
Sbjct: 658  MAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVVLVPTTLLAQQHL 717

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + +  ++        ++ ++ +A G   I+IGTH L Q  IQ+  L LV
Sbjct: 718  STFDERMAGFPVNLRGLSRFTSTVEAKETIKGLADGTVDIVIGTHRLLQTGIQWKNLGLV 777

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 778  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPI 837

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
             T  +      ++   ++  L    + +++  ++   EKK  + R +V           +
Sbjct: 838  LT-YVGAQEDKQIAAAIRRELLRDGQVFFVHNKVSDIEKKARDLRELVPE---------A 887

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             I + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QL
Sbjct: 888  RIVVAHGQMSEELLEQTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 947

Query: 577  HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR  E      LY     L++NSY RL+ +    D   G  +A +DL+ R  G
Sbjct: 948  HQLRGRVGRSRERGYAYFLYPKGQTLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 1007

Query: 632  EILGIKQSG 640
             +LG +QSG
Sbjct: 1008 NVLGAQQSG 1016


>gi|118602982|ref|YP_904197.1| transcription-repair coupling factor [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567921|gb|ABL02726.1| transcription-repair coupling factor [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 1142

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/382 (35%), Positives = 220/382 (57%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q   + ++L DM     M R++ GDVG GKT +A+ A   AVEAG Q  I+
Sbjct: 595 SFPFEETPDQLKTMDEVLADMQSCRPMDRLVCGDVGFGKTEIAMRAAFLAVEAGKQVAIL 654

Query: 328 APIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P  +L+ QHY+ F+ ++  N  + +  ++    Q  ++  ++++  G   IIIGTH + 
Sbjct: 655 VPTTLLSNQHYQSFVDRFI-NHPVEIAALSRFQTQKEKKLIIKKLNQGTIDIIIGTHTII 713

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DI 445
           Q +I+Y  L L+I+DE+HRFGV+Q+  L +      +L MTATPIPRTL + +LG + ++
Sbjct: 714 QSTIKYKDLGLIIIDEEHRFGVKQKEALKKIRGESDILTMTATPIPRTLNM-ALGSLREL 772

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503
           S I   PA R  I+T +   N  + + E +   +  G + + +   I+  +K   N + +
Sbjct: 773 SIIATPPAKRSAIQTFVQEWNN-NNIKEAITREMHRGGQVFVLHNDIDSIDKMVENLKQI 831

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           + + +         + I HG+M   + + +M  F +   ++L+ TT+IE GID+ +A+ I
Sbjct: 832 MPKIH---------VRIAHGQMPTRELKKIMSDFYHARFQILVCTTIIETGIDIPNANTI 882

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GF 618
           II NA++FGLAQLHQLRGRVGR    +   L+   +  LSK +  RL V+++ E+   GF
Sbjct: 883 IINNAQNFGLAQLHQLRGRVGRSHHRAYAYLIIKSYQLLSKTAKKRLDVIESLEELGAGF 942

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
           ++A  DL+ R  G++LG  QSG
Sbjct: 943 ILANHDLEIRGAGDLLGDNQSG 964


>gi|330881517|gb|EGH15666.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 416

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 200/354 (56%), Gaps = 17/354 (4%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY   +    +  + VE
Sbjct: 5   MDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYNSFRDRFADWPVTVE 64

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +++          A+  +A G+  I+IGTH L QD ++   L LVI+DE+HRFGV+Q+ +
Sbjct: 65  VMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVIIDEEHRFGVRQKEQ 124

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++T ++  N+   + E
Sbjct: 125 LKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNK-PTIKE 183

Query: 474 RLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
            L   L  G + Y++   ++  EK  ++   +V           + I I HG+M + + E
Sbjct: 184 ALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPE---------ARIGIGHGQMRERELE 234

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQLRGRVGR    + 
Sbjct: 235 QVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 294

Query: 592 CILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+LG  QSG
Sbjct: 295 AYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQSG 348


>gi|225028227|ref|ZP_03717419.1| hypothetical protein EUBHAL_02499 [Eubacterium hallii DSM 3353]
 gi|224954539|gb|EEG35748.1| hypothetical protein EUBHAL_02499 [Eubacterium hallii DSM 3353]
          Length = 1187

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 211/378 (55%), Gaps = 17/378 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q SAI+D  +DM     M R++ GDVG GKT VA+ A   AV    Q V + P
Sbjct: 638  PYEETEDQLSAIEDTKRDMESHRIMDRLICGDVGYGKTEVAIRAAFKAVMDSKQVVYLVP 697

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              ILAQQHY   K+  ++  + + +++       +++  + + +G   I+IGTH +   +
Sbjct: 698  TTILAQQHYNSFKERMEHYPVEIAMLSRFCTPKEQKRIFDGLKNGTIDIVIGTHKVLSKN 757

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I+Y  L L+I+DE+ RFGV+Q+ K+ Q      VL ++ATPIPRTL ++  G  D+S + 
Sbjct: 758  IKYKNLGLLIIDEEQRFGVKQKEKIKQLKKDVDVLALSATPIPRTLHMSLAGIRDMSVLE 817

Query: 450  EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
              P  R+ I+T ++  N   + E IER    L  G + Y++  ++     +N   V    
Sbjct: 818  VPPVDRRAIQTYVMEYNEELVREAIER---ELGRGGQVYYVYNRV-----NNIDEVAAGL 869

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              L  + T   A  HG+M +   E++M  F N    +L++TT+IE G+D+ + + +II++
Sbjct: 870  QRLLPNATVEYA--HGQMGERQLETIMSGFINKEIDVLVSTTIIETGLDIPNVNTMIIQD 927

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
            A+ FGL+QL+QLRGRVGR    +   L+Y  +  L + +  RL  ++   D   GF IA 
Sbjct: 928  AQLFGLSQLYQLRGRVGRSNRTAYAFLMYRRNSILKEEAEKRLKAIREFTDLGSGFKIAM 987

Query: 623  EDLKQRKEGEILGIKQSG 640
             DL+ R  G +LG +QSG
Sbjct: 988  RDLEIRGAGNLLGAEQSG 1005


>gi|212702598|ref|ZP_03310726.1| hypothetical protein DESPIG_00624 [Desulfovibrio piger ATCC 29098]
 gi|212674039|gb|EEB34522.1| hypothetical protein DESPIG_00624 [Desulfovibrio piger ATCC 29098]
          Length = 1192

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 229/431 (53%), Gaps = 25/431 (5%)

Query: 220  WTSPARE-RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            W+S   + R A +++ A  + +   RK  K   G   +  G++  +      F  T  Q 
Sbjct: 594  WSSGKEKVRKAIEKIAADLVEMYAYRKVAK---GFRYDPPGELYHEFEATFGFEETPDQA 650

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+D+L DM +   M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QHY
Sbjct: 651  RAIEDVLADMDKSEPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQHY 710

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +  +       + V +++  +P+A +++ L+  A GQ  I++GTH L    +    L L+
Sbjct: 711  QTFRARLAGFPVTVGLLSRFVPRARQKEVLKAAAEGQIDILLGTHRLLSSDVSLPNLSLL 770

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + KL        VL +TATPIPRTL L+  G  D+S I   P  RKP+
Sbjct: 771  ILDEEQRFGVRHKEKLKALKKNVDVLTLTATPIPRTLQLSMSGIRDLSVIETAPQDRKPV 830

Query: 459  KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
             T ++   R D+   R  L+  L+   + +W+  +++  E+     R +V          
Sbjct: 831  ATAVL---RRDDATLRTVLERELAREGQVFWVYNRVQGLERVAEYVRKLVP--------- 878

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            T+ + + HG+MS+ + ES M  F +G   +L+ T ++E G+D   A+ ++++ A+ FGL 
Sbjct: 879  TARVGMAHGQMSESELESNMHKFWHGELDVLVCTAIVESGLDFPRANTLVVDQAQLFGLG 938

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
            QL+QLRGRVGR +  +    +      LS+ +  RL ++ + +    GF +A EDL+ R 
Sbjct: 939  QLYQLRGRVGRSDRQAYAFFVVPDTEHLSEVAEERLRIIMDMDYLGAGFQVAMEDLRLRG 998

Query: 630  EGEILGIKQSG 640
             G ILG  QSG
Sbjct: 999  AGNILGEVQSG 1009


>gi|21323730|dbj|BAB98356.1| Transcription-repair coupling factor - superfamily II helicase
           [Corynebacterium glutamicum ATCC 13032]
          Length = 1209

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/414 (33%), Positives = 219/414 (52%), Gaps = 19/414 (4%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +AG++  L  ++Q     G P   +    +++  N P+  T+ Q  AI  + +DM +   
Sbjct: 595 IAGELVELYAKRQSAP--GHPFAPDTPWQKEMEDNFPYVETEDQMLAIDAVKEDMEKSVP 652

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH    ++      + ++
Sbjct: 653 MDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQSTFEERMTGFPVTIK 712

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            ++     A  R+ L  +A G   I+IGTH L Q  +Q+  L LVIVDE+ RFGV+ +  
Sbjct: 713 GLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEH 772

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           +    T   VL M+ATPIPRTL ++  G  +++ +   P  R PI T + P     +V  
Sbjct: 773 IKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTYVGPYED-KQVAA 831

Query: 474 RLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
            ++  L    + ++I  ++   EKK    R +V           + + + HG+MS+   E
Sbjct: 832 SIRRELLRDGQVFFIHNKVADIEKKAREIRDLVPE---------ARVVVAHGQMSEELLE 882

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQLRGRVGR  E   
Sbjct: 883 QTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGY 942

Query: 592 CILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
              LY     L++ SY RL+ +    D   G  +A +DL+ R  G +LG +QSG
Sbjct: 943 AYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSG 996


>gi|154503862|ref|ZP_02040922.1| hypothetical protein RUMGNA_01688 [Ruminococcus gnavus ATCC 29149]
 gi|153795461|gb|EDN77881.1| hypothetical protein RUMGNA_01688 [Ruminococcus gnavus ATCC 29149]
          Length = 1121

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 211/373 (56%), Gaps = 15/373 (4%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  AI D  QDM  K  M R++ GDVG GKT +A+ A   A++ G Q V + P  IL
Sbjct: 567 TDDQLQAIADTKQDMESKKIMDRLICGDVGYGKTEIAIRAAFKAIQDGKQVVYLVPTTIL 626

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY    +  +   + V+++      A ++K  E +  G   I+IGTH +    +++ 
Sbjct: 627 AQQHYNTFVQRMKEFPVRVDLLCRFRTPAQQKKTTEDLKKGLVDILIGTHRVLSKDVEFK 686

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ +G  D+S + E P 
Sbjct: 687 DLGLLIIDEEQRFGVTHKEKIKKLRENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPM 746

Query: 454 GRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            R PI+T ++  N  DE++ E ++  L    + Y++  ++     S+   + +    L  
Sbjct: 747 DRMPIQTYVMEYN--DEMVREAIQRELDRDGQVYYVYNRV-----SDIAEIADHVQKLVP 799

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +++A  HG+M++ + E++M  F NG   +L++TT+IE G+D+ +A+ +II +A+  G
Sbjct: 800 D--ATVAFAHGQMAEHELENIMYDFINGDIDVLVSTTIIETGLDISNANTMIIHDADRLG 857

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
           L+Q++QLRGRVGR   ++   LLY     L + +  RL+ ++   D   GF IA  DL+ 
Sbjct: 858 LSQMYQLRGRVGRSNRMAYAFLLYRRDKLLKEVAEKRLAAIREFTDLGSGFKIAMRDLEI 917

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +Q G
Sbjct: 918 RGAGNLLGAEQHG 930


>gi|237745816|ref|ZP_04576296.1| transcription-repair coupling factor [Oxalobacter formigenes
           HOxBLS]
 gi|229377167|gb|EEO27258.1| transcription-repair coupling factor [Oxalobacter formigenes
           HOxBLS]
          Length = 1150

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 146/412 (35%), Positives = 219/412 (53%), Gaps = 17/412 (4%)

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A ++  L  R+  +K  G P  +     +    +  F  T  Q +AI  +++DM+ +  M
Sbjct: 570 AAELLDLYARRSMRK--GFPFPLTKNDYEAFADSFGFEETPDQAAAISAVMEDMTSEKPM 627

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QH +  +    +  + +  
Sbjct: 628 DRLICGDVGFGKTEVALRAAFIAVMGGKQVALLAPTTLLAEQHAQTFRDRFADWPVRISE 687

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           ++    Q    + ++ +  G   I+IGTH L    + + +L LVI+DE+HRFGV+Q+  L
Sbjct: 688 LSRFRTQKQVNQTIQGLEDGSVDIVIGTHKLLSKDVSFKRLGLVIIDEEHRFGVRQKEAL 747

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-E 473
                   VL +TATPIPRTL +   G    S I   P  R  IKT +   N  D VI E
Sbjct: 748 KAIRAEVDVLTLTATPIPRTLGMALDGLRSFSIIATAPQKRLAIKTFVRSEN--DSVIRE 805

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
                L  G + Y++  ++E  +  N R ++E  N L E   + I + HG+M + D E V
Sbjct: 806 ACLRELKRGGQVYFLHNEVETIE--NRRVMLE--NLLPE---ARIGVAHGQMHERDLEKV 858

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F      +L+ TT+IE GIDV +A+ +++  A+ FGLAQLHQLRGR+GR    +   
Sbjct: 859 MRDFVAHRYNILLCTTIIETGIDVPNANTMVMHRADKFGLAQLHQLRGRIGRSHHQAYAY 918

Query: 594 LLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           LL +    LSK +  RL  ++  E+   GF +A  DL+ R  GE+LG +QSG
Sbjct: 919 LLVNDIQTLSKQAQRRLEAIRQMEELGSGFFLAMHDLEIRGAGEVLGEEQSG 970


>gi|149204032|ref|ZP_01881000.1| transcription-repair coupling factor [Roseovarius sp. TM1035]
 gi|149142474|gb|EDM30519.1| transcription-repair coupling factor [Roseovarius sp. TM1035]
          Length = 1150

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 142/398 (35%), Positives = 224/398 (56%), Gaps = 21/398 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI+D+L D+     M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 593 PYQETDDQLHAIEDVLNDLGSGAPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVIAP 652

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+      +   + V  ++  +      K  + +A G+A I++GTHAL    
Sbjct: 653 TTLLARQHYQEFASRFRGFPVNVRPLSRFVSAGEAAKTRDAMARGEADIVVGTHALLAKG 712

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ RFGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I+
Sbjct: 713 IRFKNLGLLIIDEEQRFGVAHKERLKQLRSDVHVLTLTATPIPRTLQLSLSGVRDLSIIS 772

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  E      +E 
Sbjct: 773 TPPVDRLSIRTY---VSEFDSVTVR-EALLREHYRGGQSFYVVPRISDLPE------IED 822

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F        S + I HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +II 
Sbjct: 823 FLKTQVPEVSYV-IAHGQMAAGELDERMNAFYDGKYDVLLATTIVESGLDIPTANTMIIH 881

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGL+QL+Q+RGRVGR +  +   L   P  PL+  +  RL VL + +    GF +A
Sbjct: 882 RADMFGLSQLYQIRGRVGRSKTRAYAYLTTKPRVPLTPGAEKRLRVLGSLDTLGAGFTLA 941

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 942 SQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 977


>gi|89100521|ref|ZP_01173382.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911]
 gi|89084787|gb|EAR63927.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911]
          Length = 1179

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/398 (34%), Positives = 221/398 (55%), Gaps = 21/398 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   + +G + ++   + P+  T+ Q  +I +I  DM ++  M R+L GDVG GKT VA+
Sbjct: 604 GYAFSPDGDMQREFELSFPYQETEDQLRSIHEIKLDMEKERPMDRLLCGDVGYGKTEVAI 663

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   A+  G Q  I+ P  ILAQQHY+ +++  Q   + + +++    +  + + ++ +
Sbjct: 664 RAAFKAIADGKQVAILVPTTILAQQHYQTMRERFQEYPVEIGLLSRFRTKKQQTETVKGL 723

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +G   I++GTH L    I Y  L L+I+DE+ RFGV  + K+ Q  T   VL +TATPI
Sbjct: 724 KNGTVDIVVGTHRLLSKEIIYKDLGLLIIDEEQRFGVTHKEKIKQLKTNVDVLTLTATPI 783

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489
           PRTL ++ LG  D+S I   P  R P++T ++  N   + E IER    ++ G + Y++ 
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGGLVREAIER---EMARGGQVYFLY 840

Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            ++E  E+K      +V           + +   HG+M++ + ESVM SF  G   +L++
Sbjct: 841 NRVEDIERKAEEISMLVP---------DAKVVAAHGQMTENELESVMLSFLGGEADVLVS 891

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605
           TT+IE G+D+ + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     L++ + 
Sbjct: 892 TTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAE 951

Query: 606 TRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
            RL  +K  TE   GF IA  DL  R  G +LG +Q G
Sbjct: 952 KRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGSQQHG 989


>gi|225387033|ref|ZP_03756797.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme DSM
            15981]
 gi|225046851|gb|EEG57097.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme DSM
            15981]
          Length = 1221

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 207/378 (54%), Gaps = 17/378 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  AI  +  DM  +  M R++ GDVG GKT VAL A   AV+   Q V + P
Sbjct: 670  PYDETDDQLDAIDSVKHDMESRKIMDRLVCGDVGYGKTEVALRAAFKAVQDSKQVVYLVP 729

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              ILAQQHY    +  ++  + V++++     + ++K LE +  G   I+IGTH +    
Sbjct: 730  TTILAQQHYNTFVQRMKDFPVRVDMLSRFCTPSQQKKTLEDLRKGMVDIVIGTHRVLSKD 789

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +++  L L+IVDE+ RFGV  + K+ Q      VL +TATPIPRTL ++  G  D+S + 
Sbjct: 790  MKFRDLGLLIVDEEQRFGVAHKEKIKQMKENVDVLTLTATPIPRTLHMSLAGIRDMSVLE 849

Query: 450  EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
            E P  R PI+T ++  N   I E I R    LS G + Y++  ++     ++   V  R 
Sbjct: 850  EPPVDRTPIQTYVMEYNEEMIREAINR---ELSRGGQVYYVYNRV-----TDIDEVANRV 901

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             +L      + A  HG+M + + E +M  F NG   +L++TT+IE G+D+ +A+ +I+ +
Sbjct: 902  AALVPEAVVTFA--HGQMREHELERIMADFINGEIDVLVSTTIIETGLDIPNANTMIVHD 959

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
            A+  GL+QL+QLRGRVGR    S   L+Y     L + +  RL  ++  TE   G  IA 
Sbjct: 960  ADRMGLSQLYQLRGRVGRSNRTSYAFLMYKRDKLLKEEAEKRLQAIREFTELGSGIKIAM 1019

Query: 623  EDLKQRKEGEILGIKQSG 640
             DL+ R  G +LG +Q G
Sbjct: 1020 RDLEIRGAGNVLGAEQHG 1037


>gi|167646581|ref|YP_001684244.1| transcription-repair coupling factor [Caulobacter sp. K31]
 gi|167349011|gb|ABZ71746.1| transcription-repair coupling factor [Caulobacter sp. K31]
          Length = 1155

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 145/416 (34%), Positives = 225/416 (54%), Gaps = 30/416 (7%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q SAI D+L+D+     M R++ GDVG GKT VAL A      +G Q  I+ P
Sbjct: 603  PYEETDDQLSAIADVLEDLGSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVCP 662

Query: 330  IGILAQQHYEFIKKYTQNTQIIV----EIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
              +LA+QHY+  K   Q   + V     ++TG      R    E +A+GQ  I++GTHA+
Sbjct: 663  TTLLARQHYKTFKDRFQGWPVKVTRLSRLVTGKEAAETR----EGLANGQLEIVVGTHAI 718

Query: 386  FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
                + +  L LVIVDE+  FGV+ + KL +     H+L +TATPIPRTL +   G  ++
Sbjct: 719  LSKQVSFKDLGLVIVDEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIREM 778

Query: 446  SKITEKPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
            S I   P  R  ++T I P + +   E + R K     G +AY++ P+I++ +E      
Sbjct: 779  SIIATPPVDRLAVRTYISPFDPVTLREALLREKY---RGGQAYYVVPRIKDLEE------ 829

Query: 504  VERFNSLHEHFTSSIAII-HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +E+F  L         ++ HG+M+    E VM +F  G   +L+ATT++E G+D+  A+ 
Sbjct: 830  IEKF--LRTQVPEVKYVVGHGQMAPTQLEDVMTAFYEGQYDVLLATTIVESGLDIPSANT 887

Query: 563  IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---G 617
            +I+  A+ FGLAQL+Q+RGRVGR +  +   L       ++ ++  RL VL++ +    G
Sbjct: 888  LIVHRADMFGLAQLYQIRGRVGRSKARAYAYLTTPNEKQITLSAEKRLKVLQSLDSLGAG 947

Query: 618  FLIAEEDLKQRKEGEILGIKQSGMPKFL---IAQPELHDSLLEIARKDAKHILTQD 670
            F +A  DL QR  G +LG +QSG  K +   + Q  L D++ E+  +     L +D
Sbjct: 948  FQLASHDLDQRGGGNLLGDEQSGHIKEIGVELYQQMLEDAVAELRERQGAEALIED 1003


>gi|330945143|gb|EGH46858.1| transcription-repair coupling factor [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 369

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 200/354 (56%), Gaps = 17/354 (4%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY   +    +  + VE
Sbjct: 1   MDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYNSFRDRFADWPVTVE 60

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +++          A+  +A G+  I+IGTH L QD ++   L LVI+DE+HRFGV+Q+ +
Sbjct: 61  VMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVIIDEEHRFGVRQKEQ 120

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++T ++  N+   + E
Sbjct: 121 LKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNK-PTIKE 179

Query: 474 RLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
            L   L  G + Y++   ++  EK  ++   +V           + I I HG+M + + E
Sbjct: 180 ALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPE---------ARIGIGHGQMRERELE 230

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQLRGRVGR    + 
Sbjct: 231 QVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 290

Query: 592 CILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+LG  QSG
Sbjct: 291 AYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQSG 344


>gi|326692375|ref|ZP_08229380.1| transcription-repair coupling factor [Leuconostoc argentinum KCTC
           3773]
          Length = 1176

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 140/432 (32%), Positives = 235/432 (54%), Gaps = 24/432 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  A  E +A  +  L  +++ +     P +   ++        P +P   Q 
Sbjct: 568 EWAKTKRQVAAKIEDIADDLLELYAQREAEAGYAFPPDDTAQLKFDTAFGYPETP--DQI 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM +   M R+L GDVG GKT VAL A+  A  AG Q   +AP  IL QQHY
Sbjct: 626 RSIEEIKADMQKPRPMDRLLVGDVGFGKTEVALRAIFKAAHAGKQVAFLAPTTILVQQHY 685

Query: 339 E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           E  + +++   ++ + +++     A  +  + ++   +  I++GTH L    + +  L L
Sbjct: 686 ETMLARFSAFPELKIGVLSRFQTPAQNKAVIAKLKAHEIDIVVGTHRLLSQDVTFADLGL 745

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +++DE+ RFGV+ + +L Q   +  VL +TATPIPRTL +  +G  D+S I   PA R P
Sbjct: 746 LVIDEEQRFGVKHKERLKQLRHSVDVLTLTATPIPRTLNMAMVGARDLSVIETPPANRFP 805

Query: 458 IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           I+T ++  +   +   IE+    L+   + +++  ++     ++   VV +   L    +
Sbjct: 806 IQTYVLEADWTIVRNAIEK---ELARDGQVFYLHNRV-----ADLDRVVSQIEELVP--S 855

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A IHG+MS+   ES++  F NG   +L+ TT+IE G+D+ +A+ +I+ENA+H GL+Q
Sbjct: 856 ARVAAIHGQMSETQLESILFDFLNGNYDVLVTTTIIETGVDIPNANTLIVENADHMGLSQ 915

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLSVLKN-TE--DGFLIAEEDLKQR 628
           L+QLRGRVGR   ++     Y  P S+     +  RL+ +++ TE   GF IA  DL  R
Sbjct: 916 LYQLRGRVGRSTRLAYAYFTY--PFSRTPSEEAEKRLAAIRDFTELGSGFRIAMRDLSIR 973

Query: 629 KEGEILGIKQSG 640
             G++LG +Q G
Sbjct: 974 GAGDLLGKQQHG 985


>gi|229542275|ref|ZP_04431335.1| transcription-repair coupling factor [Bacillus coagulans 36D1]
 gi|229326695|gb|EEN92370.1| transcription-repair coupling factor [Bacillus coagulans 36D1]
          Length = 1179

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 232/431 (53%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  + +A  +  L   ++  K  G   + +G + ++     P+  T+ Q 
Sbjct: 570 EWKRVKRKVQSSIQDIADDLVKLYAEREASK--GFAFSPDGDMQREFEAAFPYKETEDQL 627

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  ILAQQH+
Sbjct: 628 RSIQEIKRDMEKEKPMDRLLCGDVGYGKTEVAIRAAFKAMMDGKQVAMLVPTTILAQQHF 687

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + +      I V +++    +  + + ++ + +G   ++IGTH L    IQ++ L L+
Sbjct: 688 ETVTERFHGYPIKVGLLSRFRTRKEQNETIKGLRNGTIDMVIGTHRLLSKDIQFHDLGLL 747

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + K+ +  T   VL +TATPIPRTL ++ +G  D+S I   P  R P+
Sbjct: 748 IIDEEQRFGVSHKEKIKKLKTNVDVLTLTATPIPRTLHMSMVGVRDLSVIETPPENRFPV 807

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +T ++  N   + E IER    L+   + Y++  +IE  E+K      +V          
Sbjct: 808 QTYVLEYNDQMVREAIER---ELARDGQVYFLYNRIEDIERKAEEIARLVP--------- 855

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + +A  HGRM++   ESV+  F  G   +L+ TT+IE G+D+ + + +I+ +A+  GL+
Sbjct: 856 DARVAYAHGRMTESQLESVIFGFLEGEYDVLVTTTIIETGVDIPNVNTLIVNDADRMGLS 915

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+QLRGRVGR   ++     Y     L++ S  RL  +K  TE   GF IA  DL  R 
Sbjct: 916 QLYQLRGRVGRSNRVAYAYFTYRKDKVLAEASEKRLQAIKEFTELGSGFKIAMRDLSIRG 975

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 976 AGNLLGAQQHG 986


>gi|113954991|ref|YP_730883.1| transcription-repair coupling factor [Synechococcus sp. CC9311]
 gi|113882342|gb|ABI47300.1| transcription-repair coupling factor [Synechococcus sp. CC9311]
          Length = 1180

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/422 (32%), Positives = 228/422 (54%), Gaps = 22/422 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G    ++G    ++  + P+ PT  Q  A  D+ +DM +   M R++ GDVG GKT VA+
Sbjct: 589 GFAFPIDGPWQVELEDSFPYEPTSDQLKATVDVKRDMEKPEPMDRLVCGDVGFGKTEVAI 648

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A+  A+ AG Q  ++AP  +LAQQH+  + +      I V ++        R+  LE +
Sbjct: 649 RAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTAGERKTILEEL 708

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G    ++GTH L   +  + KL L++VDE+ RFGV Q+ K+        VL ++ATPI
Sbjct: 709 KTGTIDAVVGTHQLLSKNTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPI 768

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICP 490
           PRTL ++  G  ++S IT  P  R+PIKT +  ++  DE +   ++  L  G + +++ P
Sbjct: 769 PRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALD--DEAVRSSIRQELDRGGQVFYVVP 826

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           ++E         + E    L E      + + HG+M++ + ES M +F  G   +++ TT
Sbjct: 827 RVE--------GIEEVAGKLREMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTT 878

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYT 606
           ++E G+D+   + I+IE+A  FGLAQL+QLRGRVGR   + +   L++P    LS+ +  
Sbjct: 879 IVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGRS-GVQAHAWLFYPGDASLSEAARQ 937

Query: 607 RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660
           RL  ++       G+ +A  D++ R  G +LG++QSG  +   F +    L +SL EI  
Sbjct: 938 RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQG 997

Query: 661 KD 662
           +D
Sbjct: 998 QD 999


>gi|293553692|ref|ZP_06674316.1| transcription-repair coupling factor [Enterococcus faecium E1039]
 gi|291602267|gb|EFF32495.1| transcription-repair coupling factor [Enterococcus faecium E1039]
          Length = 1173

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 140/431 (32%), Positives = 231/431 (53%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L   ++ +K  G     +    ++     P+S T  Q 
Sbjct: 570 EWAKTKRKVSSKIEDIADDLIKLYAARESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 627

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 628 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 688 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 748 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +T ++  N   I E I R    +  G + +++  ++E  E+K    + +V          
Sbjct: 808 QTYVMEKNPGAIREAIHR---EMGRGGQVFYLYNRVETIEQKVEEIQELVPE-------- 856

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I   HG+M++   E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+
Sbjct: 857 -ARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLS 915

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            L+QLRGRVGR   ++    +Y     L++ S  RL  +K+ TE   GF IA  DL  R 
Sbjct: 916 TLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRG 975

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 976 AGNLLGAQQHG 986


>gi|300726486|ref|ZP_07059932.1| transcription-repair coupling factor [Prevotella bryantii B14]
 gi|299776214|gb|EFI72778.1| transcription-repair coupling factor [Prevotella bryantii B14]
          Length = 1150

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 136/400 (34%), Positives = 216/400 (54%), Gaps = 17/400 (4%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K+E G   + +G +  ++  +  +  T  Q  A +++  DM +   M R++ GDVG GKT
Sbjct: 560 KREKGFAYSKDGYMQHELEASFLYEDTPDQSKATQEVKADMEKDRPMDRLVCGDVGFGKT 619

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A   G Q  ++ P  +LA QHY+  KK  +   + +E ++        +  
Sbjct: 620 EVAMRAAFKAACDGKQVAVLVPTTVLAYQHYQSFKKRLEGFPVTIEYLSRARSTKATKAV 679

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           LE +  G+  IIIGTH L   +++++ L L+I+DE+ +FGV  + KL +  T    L M+
Sbjct: 680 LENLESGKVDIIIGTHKLIGKNVKWHDLGLLIIDEEQKFGVSTKEKLRKIKTNVDTLTMS 739

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486
           ATPIPRTL  + +G  D+S +   P  R PI T +       EVI + +   +S   + Y
Sbjct: 740 ATPIPRTLQFSLMGARDMSIMRTPPPNRYPIHTELTTYGH--EVIADAINFEMSRNGQVY 797

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++  +I     SN + +    N +H++   + IAI HG+M   + E ++  F N    +L
Sbjct: 798 FVNNRI-----SNLQEIA---NLIHKYVPDARIAIGHGQMKPDELEEILMGFMNYDYDVL 849

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKN 603
           ++TT++  GID+ +A+ III  A HFGL+ LHQ+RGRVGR    + C LL  P   LS +
Sbjct: 850 LSTTIVANGIDISNANTIIINEAHHFGLSDLHQMRGRVGRSNRKAFCYLLAPPKSVLSVD 909

Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           +  RL  L+   +   GF +A +DL  R  G +LG +QSG
Sbjct: 910 ARRRLEALETFSELGSGFNLAMQDLDIRGAGNLLGSEQSG 949


>gi|224369910|ref|YP_002604074.1| Mfd [Desulfobacterium autotrophicum HRM2]
 gi|223692627|gb|ACN15910.1| Mfd [Desulfobacterium autotrophicum HRM2]
          Length = 1165

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 145/419 (34%), Positives = 223/419 (53%), Gaps = 25/419 (5%)

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           E +AG++  L   ++  K  G   +           + PF  T  Q  AI D+L DM  +
Sbjct: 582 EKMAGELLKLYAERRVAK--GFAFSRPDHFFNDFEASFPFEETPDQLKAIDDVLVDMESE 639

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VA+ A   AV  G Q  I+ P  ILA+QH    ++   N  I 
Sbjct: 640 RPMDRLVCGDVGYGKTEVAIRATFKAVTDGKQVAIVVPTTILAEQHVHTFRERFGNYPIT 699

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE ++    +  + K ++ +  G+  ++IGTH L Q  I +  L L+++DE+ RFGV+ +
Sbjct: 700 VESLSRFRTKGEQAKIVKDLEQGKLDVVIGTHRLLQKDIAFKSLGLLVIDEEQRFGVKHK 759

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             L ++ ++  VL +TATPIPRTL ++  G  DIS I+  P  R+PI +    I+  D+ 
Sbjct: 760 EALKKRRSSVDVLALTATPIPRTLHMSLTGMRDISIISTPPVDRQPIVSY---ISEYDDA 816

Query: 472 IE--RLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           I    ++  L  G + ++I   I+   K   N + +V             IA+ HGR+++
Sbjct: 817 IAAGAIQKELERGGQIFFIHNNIKTIFKTAENLKKLVPEVR---------IAVAHGRLNE 867

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
              E  M  F N    +L+ TT++E G+D+  A+ +II  A+ FGLAQ++QLRGR+GRGE
Sbjct: 868 ASLEKAMLQFINREIDMLVCTTIVESGLDIPSANTMIINRADMFGLAQIYQLRGRIGRGE 927

Query: 588 EISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           E  +   L+ P    L++++  RL+ L    D   GF IA +DL+ R  G  LG  QSG
Sbjct: 928 E-QAYAYLFVPEEHRLTRDAQKRLAALMEHRDLGSGFQIAMKDLQIRGAGSALGGSQSG 985


>gi|85373850|ref|YP_457912.1| transcription-repair coupling factor [Erythrobacter litoralis
            HTCC2594]
 gi|84786933|gb|ABC63115.1| transcription-repair coupling factor [Erythrobacter litoralis
            HTCC2594]
          Length = 1162

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 153/455 (33%), Positives = 244/455 (53%), Gaps = 30/455 (6%)

Query: 234  LAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
            +AG++     ++  KK    P+   E  +  + +   P+  T  QE+AI D+L+D+    
Sbjct: 570  IAGELMKTAAQRALKK---APVLEAEDSVFNQFVEKFPWEETDDQEAAIADVLRDLESGR 626

Query: 293  RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
             M R++ GDVG GKT VAL A   A   G Q  ++AP  +LA+QHY+   +      + +
Sbjct: 627  PMDRLVCGDVGFGKTEVALRAAFVAAMNGQQVAVVAPTTLLARQHYQNFSERFAGFPLKI 686

Query: 353  EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
              ++  +P     +  E +A G   I++GTHA+   S ++  L LVIVDE+ RFGV  + 
Sbjct: 687  GRLSRLVPSGEMSETREGLAKGDVDIVVGTHAILSKSTEFKNLGLVIVDEEQRFGVTHKE 746

Query: 413  KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            KL Q     H+L +TATPIPRTL +   G  ++S I   P  R  ++T ++     D+++
Sbjct: 747  KLKQLRADVHMLTLTATPIPRTLQMAMTGLRELSTIQTPPVDRLAVRTYVM---EWDDMV 803

Query: 473  ERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII-HGRMSDI 528
             R + +L E   G +++ + P+I     ++  SV E    L ++     A+  HG+M   
Sbjct: 804  MR-EALLREHHRGGQSFIVVPRI-----ADMESVEE---WLRDNVPEVKAVTAHGQMGAA 854

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            + E  M +F  G  ++L++TT++E G+D+  A+ III  A+ FGLAQL+QLRGRVGR + 
Sbjct: 855  EIEKRMSAFYEGKYEVLLSTTIVESGLDLPSANTIIIHRADIFGLAQLYQLRGRVGRAKL 914

Query: 589  ISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK 643
             +   L Y     LS+ +  RL VL + +    GF +A  DL  R  G +LG +QSG  +
Sbjct: 915  RAYAYLTYAVDTQLSEVAEKRLKVLGDLDSLGAGFQLASHDLDIRGAGNLLGDEQSGHIR 974

Query: 644  ---FLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
               F + Q  L D+++  A K  +  L++D D  S
Sbjct: 975  EVGFELYQSMLEDAIM--AAKAGEAGLSEDRDALS 1007


>gi|258544294|ref|ZP_05704528.1| transcription-repair coupling factor [Cardiobacterium hominis ATCC
           15826]
 gi|258520446|gb|EEV89305.1| transcription-repair coupling factor [Cardiobacterium hominis ATCC
           15826]
          Length = 526

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 142/356 (39%), Positives = 204/356 (57%), Gaps = 21/356 (5%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M RI+ GDVG GKT VA+ A+ AA  AG Q  ++AP  +LA+QHY  ++    N  + ++
Sbjct: 1   MDRIICGDVGFGKTEVAVRAIHAAASAGYQVALIAPTTLLAEQHYHNLQDRFANHPLTID 60

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            ++     A  ++A+ER+  G   +IIGTH L Q  IQ+  L LVI+DE+ RFGV+ + K
Sbjct: 61  SLSRFKSAADAKRAIERLKAGGTDLIIGTHRLLQKDIQFKNLGLVIIDEEQRFGVRHKEK 120

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII--PINRIDEV 471
           L    +  ++L +TATPIPRTL L   G  DIS I   PAGR+ I+T++    +  I + 
Sbjct: 121 LKSLRSDTNLLTLTATPIPRTLNLALSGLRDISIIATPPAGRQNIQTILAEWDMETIRDA 180

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDID 529
            ER       G + Y +   I+          +ER   L +       IAI HG+M + +
Sbjct: 181 CEREH---RRGGQTYILHNDIDS---------IERIARLLQDALPEQRIAIGHGQMRERE 228

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
            E +M +F+N    +LIATT+IE GID+ +A+ III  A+  GL+QLHQLRGRVGR    
Sbjct: 229 LEHLMQNFQNRHYDILIATTIIESGIDIPNANTIIINRADKLGLSQLHQLRGRVGRSHHQ 288

Query: 590 SSCILLY--HPPLSKNSYTRL---SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           +   L+      L K++  RL   + L +   GFL+A +DL+ R  GEILG +QSG
Sbjct: 289 AYAYLITPNWNTLGKDAQRRLEAFTTLDSLGAGFLLASQDLEIRGAGEILGDEQSG 344


>gi|217970622|ref|YP_002355856.1| transcription-repair coupling factor [Thauera sp. MZ1T]
 gi|217507949|gb|ACK54960.1| transcription-repair coupling factor [Thauera sp. MZ1T]
          Length = 1157

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 204/377 (54%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AI  ++ DM     M R++ GDVG GKT VAL A   AV  G Q V++ P 
Sbjct: 613 FETTPDQQAAIDAVVADMKSGRPMDRLVCGDVGFGKTEVALRAAFIAVADGKQVVVLCPT 672

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QHY+       +  I +  ++       + +AL+ +A G+  IIIGTH L Q  +
Sbjct: 673 TLLAEQHYQTFADRFADWPIKLAELSRFKSAKEQAEALQLLAEGKVDIIIGTHRLLQKDV 732

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            + +L LVI+DE+HRFGV+Q+  L Q  +   +L +TATPIPRTL L   G  + S I  
Sbjct: 733 IFKRLGLVIIDEEHRFGVRQKEALKQLRSEVDILTLTATPIPRTLGLAMEGLREFSVIAT 792

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R  IKT + P +R  I E + R       G + Y++  +++     N +  +E   
Sbjct: 793 APQKRLAIKTFVQPSSRGLIREAVLR---EFKRGGQVYFLHNEVDTI--DNMKDDLEEL- 846

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L E   + I + HG++ + + E VM  F      LL+ TT+IE GI++  A+ III  A
Sbjct: 847 -LPE---ARIVVGHGQLPERELERVMRDFTQQRANLLLCTTIIETGINIPTANTIIINRA 902

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPL--SKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLAQLHQLRGRVGR    +   LL  P    S  +  RL  +   ED   GF +A  
Sbjct: 903 DRFGLAQLHQLRGRVGRSHHQAYAYLLTQPGAKPSAQAQKRLEAIAMMEDLGSGFYLAMH 962

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  GE+LG  QSG
Sbjct: 963 DLEIRGAGEVLGENQSG 979


>gi|228471775|ref|ZP_04056548.1| transcription-repair coupling factor [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228276928|gb|EEK15623.1| transcription-repair coupling factor [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 1110

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 144/414 (34%), Positives = 225/414 (54%), Gaps = 19/414 (4%)

Query: 237 QIALLLMRKQFKKE--IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           QIA  L++   K+   +G     +  + +++  +  +  T  Q  A  ++ QDM +   M
Sbjct: 515 QIAFNLIQLYAKRREAVGYAFAPDSYLQKELEASFIYEDTPDQSKATLEVKQDMERARPM 574

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VA+ A   AV+ G Q  ++ P  ILA QHY+   +  +   + VE 
Sbjct: 575 DRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHYQTFCERLKELPVRVEY 634

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +        + + L  +A G+  I+IGTH +  + ++Y  L L+++DE+ +FGV  + KL
Sbjct: 635 LNRFRTAKEKNQVLADLASGKVDILIGTHQIVNEKVKYKDLGLLVIDEEQKFGVAVKDKL 694

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-E 473
                   VL +TATPIPRTL  + +   D+S IT  P  R PI++ II  N  +EVI +
Sbjct: 695 KTLRENIDVLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIESQIISFN--EEVIRD 752

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            +   L  G + ++I  ++E  KE     +++R         + I I HG+M     E V
Sbjct: 753 GIAYELQRGGQVFFIHNRVENIKE--VAGMIQRLIP-----DAKIGIGHGQMEGKQLEEV 805

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +F NG   +L+ATT+IE G+DV +A+ I I NA+HFGL+ LHQ+RGRVGR  + + C 
Sbjct: 806 MLAFINGDYDILVATTIIESGLDVPNANTIFIHNAQHFGLSDLHQMRGRVGRSNKKAFCY 865

Query: 594 LLYHPPLS---KNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
            +  P LS   ++S  R+  +    D   G  IA +DL+ R  G++LG +QSG 
Sbjct: 866 FI-TPNLSELPEDSRKRMQAIAQFSDLGSGIHIAMKDLEIRGAGDLLGGEQSGF 918


>gi|78224730|ref|YP_386477.1| transcription-repair coupling factor [Geobacter metallireducens
           GS-15]
 gi|78195985|gb|ABB33752.1| transcription-repair coupling factor [Geobacter metallireducens
           GS-15]
          Length = 1158

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 134/380 (35%), Positives = 210/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           +  +  T  Q SAI D++ DM+    M R++ GDVG GKT VA+     AV  G Q  ++
Sbjct: 616 SFAYEETSDQMSAIMDVIGDMTSAKPMDRLVCGDVGYGKTEVAMRGAFKAVMDGKQVAVL 675

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH E  K       + VE+++       +++ LE++  G   +IIGTH L Q
Sbjct: 676 VPTTVLAQQHLETFKARLGAYPVTVEMLSRFRTPKEQKEILEKVKKGAIDVIIGTHRLLQ 735

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             + +  L L+IVDE+ RFGV  + KL +      +L +TATPIPRTL ++ +G  D+S 
Sbjct: 736 SDVTFKDLGLLIVDEEQRFGVTHKEKLKKYKAVVDILTLTATPIPRTLYMSMMGIRDLSI 795

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVE 505
           I   P  R  +KT  +  +  D + E +   L  G + +++  +++       + R +V 
Sbjct: 796 IDTPPVDRLAVKT-FVARSSDDLIREAVMRELRRGGQIFFVHNRVQSIMNWAEHLRRIVP 854

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + IA+ HG+M + + E VM  F +G   LL+ TT+IE G+D+ +A+ +II
Sbjct: 855 E---------AKIAVGHGQMDEGELEKVMLGFMHGETNLLLCTTIIESGLDIPNANTLII 905

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLI 620
           + A+ FGLAQL+QLRGRVGR ++ +   LL      +S ++  RL +++   +   GF +
Sbjct: 906 DRADTFGLAQLYQLRGRVGRSKQRAYAYLLIPGEGAISSDARERLKIIQELTELGAGFRL 965

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  G+ILG KQSG
Sbjct: 966 ATHDLEIRGAGDILGAKQSG 985


>gi|104773517|ref|YP_618497.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103422598|emb|CAI97201.1| Transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 1158

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 140/430 (32%), Positives = 223/430 (51%), Gaps = 19/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    +   A  E +A  +  L  +++ +K  G   + +G          P+ PT  Q 
Sbjct: 557 EWAKTKKRVAARVEDIADDLIELYAKREAEK--GFAFSPDGSDQAAFEAAFPYEPTPDQL 614

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A  +I  DM +   M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQHY
Sbjct: 615 RATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHY 674

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + IK   +   + +   +    QA  +K +  +  G   +++GTH +    +Q   L L+
Sbjct: 675 QTIKDRFKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQLKDLGLL 734

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + KL Q  T   VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 735 IIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPI 794

Query: 459 KTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++      + E  +R    +  G + +++  ++ + +E+     V R   L     +
Sbjct: 795 QTYVLEQLPGTVKEACQR---EMQRGGQVFYLHNRVGDIEET-----VARLEQLLPE--A 844

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HG+MS+   E ++  F +    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL
Sbjct: 845 RIAYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQL 904

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY P   L++    RL  +++  +   GF IA  DL  R  G
Sbjct: 905 YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDLSIRGAG 964

Query: 632 EILGIKQSGM 641
            +LG +Q G 
Sbjct: 965 NMLGAQQHGF 974


>gi|296116131|ref|ZP_06834749.1| transcription-repair coupling factor [Gluconacetobacter hansenii ATCC
            23769]
 gi|295977237|gb|EFG83997.1| transcription-repair coupling factor [Gluconacetobacter hansenii ATCC
            23769]
          Length = 1157

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 151/421 (35%), Positives = 222/421 (52%), Gaps = 33/421 (7%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF  T+ Q  AI D+L DM+    M R++ GDVG GKT VAL A   A  +GGQ  ++ P
Sbjct: 604  PFVETEDQSRAIADVLDDMASGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGGQVAVVVP 663

Query: 330  IGILAQQHYEFIKKYTQNTQIIV----EIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
              +LA+QHY        +  I V     ++TG    A R K LE    G  +I+IGTHAL
Sbjct: 664  TTLLARQHYRTFAARFADLPIKVAQLSRMVTGKDATAVR-KGLE---DGTVNIVIGTHAL 719

Query: 386  FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               ++++  L L+IVDE+  FGV  + KL       HVL ++ATP+PRTL L   G  ++
Sbjct: 720  LAKTVKFADLGLLIVDEEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLALTGVREM 779

Query: 446  SKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
            S I   P  R  ++T I+P +   I E I+R +     G + + + P+IE+      R  
Sbjct: 780  SLIATPPTDRLAVRTFIMPFDSVVIREAIQRERF---RGGQVFCVVPRIEDLDRMATR-- 834

Query: 504  VERFNSLHEHFTSSIAI-IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
                  LHE    +  +  HGR++  + E VM  F +G   +L++T ++E G+D+   + 
Sbjct: 835  ------LHEIVPDARMVQAHGRLTPTELERVMTEFSDGKYDILLSTNIVESGLDMPAVNT 888

Query: 563  IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
            +II  A+ FGL QL+QLRGRVGRG++     L +     LS  +  RL V++  +    G
Sbjct: 889  LIIHRADMFGLGQLYQLRGRVGRGKQRGYAYLTWPQTHILSAAAQKRLEVMQTLDTLGAG 948

Query: 618  FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH----ILTQDPDL 673
            F +A  DL  R  G +LG +QSG  + +    EL+  +LE A  D +H      T+D D 
Sbjct: 949  FTLASHDLDLRGAGNLLGDEQSGHIREV--GIELYQQMLEDAVADLRHEKGRRKTEDRDW 1006

Query: 674  T 674
            T
Sbjct: 1007 T 1007


>gi|145219954|ref|YP_001130663.1| transcription-repair coupling factor [Prosthecochloris vibrioformis
           DSM 265]
 gi|145206118|gb|ABP37161.1| transcription-repair coupling factor [Chlorobium phaeovibrioides
           DSM 265]
          Length = 1112

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 146/463 (31%), Positives = 249/463 (53%), Gaps = 24/463 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W   AR+    ++L    I L+ +  Q K + G     +    ++   +  F  T  Q 
Sbjct: 486 KWA--ARKEKVRNKLRDIAINLIKLYAQRKMQPGFAFGPDSIFMREFEASFIFDETPDQH 543

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI+++ +DM   + M R++ GD G GKT +A+ A   AVE+  QA I+ P  ILA QH 
Sbjct: 544 KAIEELKKDMQAPHPMDRLICGDAGFGKTEIAMRAAFKAVESKKQAAILTPTTILAHQHA 603

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E   +  +N  I + +++  +P+A +++ L++IA G   I+IGTH L    +Q+  L L+
Sbjct: 604 ETFARRFENFPITIAVLSRFVPRAEQKETLKKIAAGTVDIVIGTHRLVSKDVQFNDLGLL 663

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+  FGV+ + KL ++      L M+ATPIPRTL  + LG  D+S ++  P  R+P+
Sbjct: 664 VIDEEQHFGVEVKEKLREQFPGVDTLTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQPV 723

Query: 459 KTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           +T+I   +   E+IE  ++  ++   + +++  ++   E+ +   R +V          +
Sbjct: 724 ETLITDYDA--ELIETAIRREINRDGQVFFLHNRVAGLEEMQRTIRELVP---------S 772

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I   HG+M   + E +M         +LI+TT+I  G+D+ +A+ III  A+ FGL+ 
Sbjct: 773 ARIVYAHGQMPARELEKIMMDVMQKEVDVLISTTIIGSGLDISNANTIIINRADMFGLSD 832

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR E  + C L+  P   L + +  RL+V+++ TE   GF IA  DL  R  
Sbjct: 833 LYQLRGRVGRSERKAYCYLITPPLHTLKREAVQRLAVIESFTELGSGFSIALRDLDIRGA 892

Query: 631 GEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQD 670
           G +LG +QSG      F + Q  L +++  +   +  H+ + D
Sbjct: 893 GNLLGAEQSGYIHELGFDLYQKMLEETVAGLKSTEFSHLFSGD 935


>gi|326489969|dbj|BAJ94058.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 826

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 213/379 (56%), Gaps = 17/379 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           P+ PT  Q  A  DI  D++++   M R++ GDVG GKT VA+ A+   V  G QA+++A
Sbjct: 270 PYEPTPDQNQAFIDIENDLTERETPMDRLICGDVGFGKTEVAMRAIFIVVSTGYQAMVLA 329

Query: 329 PIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P  ILA QH++ + ++++    I V I +G   +  + + + +I +G   II+GTHAL  
Sbjct: 330 PTVILANQHFDVMSERFSNYPDIKVAIFSGAQSKDEKDELITKITNGHLQIIVGTHALLT 389

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + + Y  L L++VDE+ +FGVQQ+ K+     +  VL ++ATPIPRTL L   G  D S 
Sbjct: 390 ERMAYNNLGLLVVDEEQKFGVQQKEKIASLKASIDVLTLSATPIPRTLYLALTGFRDASL 449

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           ++  P  R  +KT +   +R +  +  +K+ L  G + +++ P+I        +++ +  
Sbjct: 450 MSTPPPERVAVKTYVSAFSR-ESALSAIKLELKRGGQVFYVVPRI--------KAIDDVL 500

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             L +      +AI HG+    + +  M+ F  G  K+L+ T +IE GID+ +A+ +I++
Sbjct: 501 QFLKDSLPDVPMAIAHGKKVSKNIQLAMEKFSCGEIKILVCTHIIESGIDIPNANTMIVQ 560

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621
            AE FGLAQL+QLRGRVGR        L Y     LS+ +  RL  ++   D   GF +A
Sbjct: 561 YAELFGLAQLYQLRGRVGRSGREGFTHLFYTDKSLLSRIAMDRLGAIEEHSDLGQGFHVA 620

Query: 622 EEDLKQRKEGEILGIKQSG 640
           E+D+  R  G + G +QSG
Sbjct: 621 EKDMGIRGFGSMFGEQQSG 639


>gi|325265261|ref|ZP_08131986.1| transcription-repair coupling factor [Clostridium sp. D5]
 gi|324029440|gb|EGB90730.1| transcription-repair coupling factor [Clostridium sp. D5]
          Length = 1119

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 210/371 (56%), Gaps = 15/371 (4%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q  AI D  +DM  K  M R++ GDVG GKT +A+ A   AV+ G Q V + P  ILAQ
Sbjct: 575 DQLQAIADTKRDMESKKIMDRLICGDVGYGKTEIAIRAAFKAVQEGKQVVYLVPTTILAQ 634

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY    +  ++  +  +++      A ++K +E +  G   I+IGTH +    +Q+  L
Sbjct: 635 QHYNTFVQRMKDFPVRADLLCRFRTSAQQKKTVEDLKKGLVDIVIGTHRVLSKDVQFKDL 694

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L+I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ +G  D+S + E P  R
Sbjct: 695 GLLIIDEEQRFGVTHKEKIKKLRENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDR 754

Query: 456 KPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            PI+T ++  N  DE++ E ++  LS   + Y++  ++     S+   V  R   L    
Sbjct: 755 MPIQTYVMEYN--DEMVREAIERELSRDGQVYYVYNRV-----SDIADVAGRIQKLVPD- 806

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            ++++  HG+M++   E++M  F NG   +L++TT+IE G+D+ + + +II +A+  GL+
Sbjct: 807 -AAVSFAHGQMNERQLENIMYDFINGDIDVLVSTTIIETGLDISNVNTMIIHDADRLGLS 865

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QL+QLRGRVGR   ++   LLY     L + +  RL+ ++   D   GF IA  DL+ R 
Sbjct: 866 QLYQLRGRVGRSSRMAYAFLLYRKDKLLKEVAEKRLAAIREFTDLGSGFKIAMRDLEIRG 925

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 926 AGNLLGEEQHG 936


>gi|291059734|gb|ADD72469.1| transcription-repair coupling factor [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 1155

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 136/376 (36%), Positives = 214/376 (56%), Gaps = 13/376 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q   I+++ QDM +   M R++ GDVG GKT +A+ A   AV  G Q V + P
Sbjct: 612 PYEETDDQRICIEEVKQDMQEAVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQVVFLTP 671

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +L +QH+  I    ++  + +E ++  +P++ ++  L ++AHG   +I+GTH L Q  
Sbjct: 672 TTLLVEQHFRTICNRFKHFPVRIEKLSRFVPKSEQKDILAKLAHGDIDLIVGTHRLIQKD 731

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+I+DE+ RFGVQ + KL Q  T    L ++ATPIPRTL +  L   D+S +T
Sbjct: 732 VSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHMGMLKIRDMSLLT 791

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P GR PI+TVI   +  + V   ++  L    + +++  +IE     N  SV      
Sbjct: 792 TPPEGRLPIETVIQQFDP-NLVATAIRKELDREGQIFYLHNRIE-----NLESVKCMLQK 845

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L      SI + H  M   + E + + F   T +LL++TT+IE GIDV +A+ III+ A+
Sbjct: 846 LVPEL--SICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDRAD 903

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEED 624
            +G++QL+QLRGRVGR ++ +   LLY+    LS  +  RL V+ +  D   GF +A +D
Sbjct: 904 MYGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVALKD 963

Query: 625 LKQRKEGEILGIKQSG 640
           ++ R  G +LG +QSG
Sbjct: 964 MEIRGVGNLLGKEQSG 979


>gi|28209962|ref|NP_780906.1| transcription-repair coupling factor [Clostridium tetani E88]
 gi|28202397|gb|AAO34843.1| transcription-repair coupling factor [Clostridium tetani E88]
          Length = 1030

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 142/429 (33%), Positives = 231/429 (53%), Gaps = 19/429 (4%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EWT +  + + + +E+    + L  +R   K   G   + +    ++     P   T  Q
Sbjct: 581 EWTKTKNKAKKSIEEIAEDLVNLYAVRSTLK---GYKFSKDTVWQRQFEEEFPHEETPDQ 637

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            +AI++I  DM     M R+L GDVG GKT VAL A   +V  G Q   + P  ILAQQH
Sbjct: 638 ITAIEEIKNDMQSNRTMDRLLCGDVGYGKTEVALRAAFKSVMDGKQVAFLVPTTILAQQH 697

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y  + K   +  I +E+++     A +   ++ +  G   I+IGTH + Q  +Q+  L L
Sbjct: 698 YNNLLKRFSDFPINIEMVSRFRTSAQQNATMKALKEGNIDILIGTHRILQKDVQFKDLGL 757

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +++DE+ RFGV+ + K+ +      VL +TATPIPRTL ++ +G  DIS I   P  R P
Sbjct: 758 LVIDEEQRFGVKHKEKIKEFKKNVDVLTLTATPIPRTLHMSLVGVRDISIIETPPEDRYP 817

Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           I+T ++  N  D++I + +   L+ G + Y++  ++E     N + +    + L     +
Sbjct: 818 IQTYVVEYN--DQLIRDAILRELNRGGQIYFVYNRVE-----NIKEIATHVSKLVPE--A 868

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            + I HG+M + + E V+  F N    +L+ATT+IE G+D+ + + +II +++  GL+QL
Sbjct: 869 KVGIAHGQMKERELEKVVMDFMNKEHDILVATTIIETGMDIQNVNTMIIYDSDKMGLSQL 928

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGRVGR   ++ C L Y     L++ +  RL  +K  TE   GF IA +DL+ R  G
Sbjct: 929 YQLRGRVGRSSRMAYCYLTYKKDKILTEVAEKRLKAIKEFTELGSGFKIALKDLEIRGAG 988

Query: 632 EILGIKQSG 640
            ++G  Q G
Sbjct: 989 NMMGSSQHG 997


>gi|228989261|ref|ZP_04149254.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM
           12442]
 gi|228770471|gb|EEM19042.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM
           12442]
          Length = 1176

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 138/387 (35%), Positives = 216/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   I E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPGLIREAIER---ELARGGQIYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF +G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVPE---------ARVTYAHGKMNESELESVMLSFLDGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|116070624|ref|ZP_01467893.1| Transcription-repair coupling factor [Synechococcus sp. BL107]
 gi|116066029|gb|EAU71786.1| Transcription-repair coupling factor [Synechococcus sp. BL107]
          Length = 1192

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 137/422 (32%), Positives = 227/422 (53%), Gaps = 22/422 (5%)

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            G     +G    ++  + P+ PT  Q  +  D+ +DM +   M R++ GDVG GKT VA+
Sbjct: 601  GFAFPPDGPWQTELEESFPYEPTPDQLKSTTDVKRDMERAEPMDRLVCGDVGFGKTEVAI 660

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A+  A+ AG Q  ++AP  +LAQQH+  + +      I V ++        R+  LE +
Sbjct: 661  RAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTTTERKSILEGL 720

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
              G    ++GTH L      + +L L++VDE+ RFGV Q+ K+        VL ++ATPI
Sbjct: 721  KQGTIDAVVGTHQLLSKGTSFQQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPI 780

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            PRTL ++  G  ++S IT  P  R+PIKT +  ++  + V   ++  L  G + +++ P+
Sbjct: 781  PRTLYMSLSGVREMSLITTPPPLRRPIKTHLASLD-PEAVRSAIRQELDRGGQVFYVVPR 839

Query: 492  IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +E  E   +  R+++     L         + HG+M++ + ES M +F  G   +++ TT
Sbjct: 840  VEGIEDVATGLRAMLPGLKLL---------VAHGQMAEGELESAMVAFNAGEADVMLCTT 890

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYT 606
            ++E G+D+   + I+IE+A  FGLAQL+QLRGRVGR   I +   L++P    LS N+  
Sbjct: 891  IVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGR-SGIQAHAWLFYPGNASLSDNARQ 949

Query: 607  RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660
            RL  ++       G+ +A  D++ R  G +LG++QSG  +   F +    L +SL EI  
Sbjct: 950  RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQG 1009

Query: 661  KD 662
            +D
Sbjct: 1010 QD 1011


>gi|312128223|ref|YP_003993097.1| transcription-repair coupling factor [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778242|gb|ADQ07728.1| transcription-repair coupling factor [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 1141

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 142/429 (33%), Positives = 235/429 (54%), Gaps = 18/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++     E++A  +  L  ++Q  K  G   + +    ++     P++ T+ Q 
Sbjct: 554 EWQKQKQKVRKSLEVVAKDLVELYAKRQLNK--GFKFSKDTVWQKEFEERFPYTETEGQL 611

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I +DM  +  M RIL GDVG GKT VA+ A   AV    Q  ++ P  ILAQQHY
Sbjct: 612 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 671

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                  ++  + +E+++    +  ++K ++ +  G   I+IGTH L    +++  L L+
Sbjct: 672 MTFSARMKDFPVTIEVLSRLKNETQQKKIIKGLKEGTIDIVIGTHRLLSSDVKFKDLGLL 731

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+H+FGV+ + K+ +  T   VL +TATPIPRTL +  LG  D+S I + P  R P+
Sbjct: 732 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRYPV 791

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++  N   I E I  LK + S G + +++  ++++ +E     V  +  +L    + 
Sbjct: 792 QTFVLEYNERIIKEAI--LKEI-SRGGQVFYLYNRVKDIQE-----VAAKLQNLVGD-SV 842

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HG+M + + E V+  F  G   +L+ TT+IE G+D+ + + +I+E+++  GLAQL
Sbjct: 843 KIACAHGQMEEEELEEVLIDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLAQL 902

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGRVGR   ++     +     LS+ +  RL+ +K  TE   GF IA  DL+ R  G
Sbjct: 903 YQLRGRVGRSSRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRGAG 962

Query: 632 EILGIKQSG 640
            I+G  Q G
Sbjct: 963 SIVGKLQHG 971


>gi|167894791|ref|ZP_02482193.1| transcription-repair coupling factor [Burkholderia pseudomallei
           7894]
          Length = 649

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 154/432 (35%), Positives = 225/432 (52%), Gaps = 25/432 (5%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           K   +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 87  KFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ 146

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             +++P  +LA+QH +       +  + +  ++          A+ +I  G   I+IGTH
Sbjct: 147 VALLSPTTLLAEQHTQTFADRFADWPVRIAELSRFKTAKEVNAAIAQINEGSVDIVIGTH 206

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L    +Q+ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  
Sbjct: 207 KLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLR 266

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFR 501
           D S I   P  R  IKT    + R +E + R  ++  L  G + Y++  ++E        
Sbjct: 267 DFSVIATAPQKRLAIKTF---VRREEESVIREAMLRELKRGGQVYFLHNEVE-------- 315

Query: 502 SVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +E   ++ E     + I I HG+M + + E VM  F      +L+ TT+IE GIDV  
Sbjct: 316 -TIENRKAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPS 374

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ II+  A+ FGLAQLHQLRGRVGR    +   LL H P  L+K +  RL  ++  E+ 
Sbjct: 375 ANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEEL 434

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
             GF +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT
Sbjct: 435 GSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLT 490

Query: 675 SVRGQSIRILLY 686
           +    +  I L+
Sbjct: 491 APLAATTEINLH 502


>gi|71907594|ref|YP_285181.1| transcription-repair coupling factor [Dechloromonas aromatica RCB]
 gi|71847215|gb|AAZ46711.1| transcription-repair coupling factor [Dechloromonas aromatica RCB]
          Length = 1147

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 140/378 (37%), Positives = 206/378 (54%), Gaps = 19/378 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q  AI  +++DM     M R++ GDVG GKT VAL A   AV  G Q  ++ P 
Sbjct: 596 FEETHDQAQAIAAVIEDMRSGKPMDRLVCGDVGFGKTEVALRAAFCAVAGGKQVAVLCPT 655

Query: 331 GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
            +L +QHY+ F+ ++      I EI      +    +AL+ +A G+  +IIGTH L    
Sbjct: 656 TLLCEQHYQTFVDRFADWPVKIAEISRFKTAK-ESAQALQELAEGKIDVIIGTHKLIGKD 714

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++ +L LV++DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I 
Sbjct: 715 VKFQRLGLVVIDEEHRFGVRQKETLKAMRAEVDVLTLTATPIPRTLAMSMEGLRDFSVIA 774

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  IKT    +++  + I R  V+  L  G + Y++  +++  +  N R  +E+ 
Sbjct: 775 TAPQKRLAIKTF---VSKFSDGIIREAVLRELKRGGQVYFLHNEVDTIE--NMREKLEKL 829

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + I I HG+M++ + E VM  F      LL+ TT+IE GID   A+ I+I  
Sbjct: 830 VP-----EARIVIGHGQMNERELERVMRDFTQQRANLLLCTTIIETGIDNPHANTILINR 884

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622
           +E FGLAQLHQLRGRVGR    +   LL      ++K +  RL  ++ +E+   GF +A 
Sbjct: 885 SEKFGLAQLHQLRGRVGRSHHQAYAYLLVQDEKAMTKQAKQRLEAIQMSEELGSGFFLAM 944

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  GE+LG  QSG
Sbjct: 945 HDLEIRGAGEVLGDNQSG 962


>gi|84503554|ref|ZP_01001605.1| transcription-repair coupling factor [Oceanicola batsensis
           HTCC2597]
 gi|84388044|gb|EAQ01092.1| transcription-repair coupling factor [Oceanicola batsensis
           HTCC2597]
          Length = 1152

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 145/398 (36%), Positives = 226/398 (56%), Gaps = 21/398 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AI+D++ DM   + M R++ GDVG GKT VAL A   A  +G Q  ++AP
Sbjct: 599 PYQETDDQLAAIEDVMTDMLSGHPMDRLICGDVGFGKTEVALRAAFVAAMSGVQVAVIAP 658

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+   +  +   + V  ++  + Q    +  E +A G   I++GTHAL   S
Sbjct: 659 TTLLARQHYQGFAERFRGFPLQVSPLSRFVSQKEADRTREGLAKGTVDIVVGTHALLAKS 718

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+++ L L+IVDE+ RFGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 719 IRFHNLGLLIVDEEQRFGVGHKERLKQLKSDVHVLTLTATPIPRTLQLSLSGVRDLSIIG 778

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  E      VE 
Sbjct: 779 TPPIDRLAIRTY---VSEFDAVTIR-EALLRERYRGGQSFYVVPRISDLAE------VEE 828

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F    E    S  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ II+ 
Sbjct: 829 FLK-AEVPEVSYVVAHGQMAAGELDQRMNAFYDGKFDVLLATTIVESGLDIPRANTIIVH 887

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGLAQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A
Sbjct: 888 RADMFGLAQLYQIRGRVGRAKTRAYAYLTTKPRVRLTPAAEKRLKVLGSLDTLGAGFTLA 947

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +DL  R  G +LG +QSG  + +    EL+ ++LE A
Sbjct: 948 SQDLDIRGAGNLLGEEQSGNMRDV--GYELYQTMLEEA 983


>gi|150014978|ref|YP_001307232.1| transcription-repair coupling factor [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901443|gb|ABR32276.1| transcription-repair coupling factor [Clostridium beijerinckii
           NCIMB 8052]
          Length = 1166

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 148/433 (34%), Positives = 232/433 (53%), Gaps = 27/433 (6%)

Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  + A+ R + +E+    + L  MR   K   G   + + +  ++     PF  T  Q
Sbjct: 574 EWQKAKAKARKSINEIAEDLVKLYAMRSTVK---GHKFSKDTEWQKQFEDEFPFEETPDQ 630

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            +++++I  DM     M R+L GDVG GKT VA+ A   AV  G Q  ++ P  ILA+QH
Sbjct: 631 LTSLEEIKIDMESDKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVALLVPTTILAEQH 690

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+ IK    +  I +++++       +++ L+++  G   I+IGTH L    IQ+  L L
Sbjct: 691 YKNIKNRFSDFPIKIDMVSRFRTAKQQKEILQKVKEGNLDILIGTHRLVSKDIQFKDLGL 750

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV+Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R P
Sbjct: 751 LIVDEEQRFGVKQKEKIKGIKKNVDVLTLSATPIPRTLHMSLSGVRDISVIETPPEERYP 810

Query: 458 IKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           ++T ++  N  D++I     +L E   G + Y++  ++E+         +ER     +  
Sbjct: 811 VQTYVVEQN--DQLIR--DAILREIGRGGQVYFVYNRVED---------IERMAKYVQSL 857

Query: 515 T--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              S + I HG+M++   E  M  F +    +L+ TT+IE G+D+ + + III +A+  G
Sbjct: 858 VPESKVGIAHGQMAERQLEKEMFDFMSEEYNVLVCTTIIETGMDIQNVNTIIIYDADKMG 917

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQ 627
           L+QL+QLRGRVGR   I+   LLY     L++ +  RL  LK+ TE   GF IA  DL+ 
Sbjct: 918 LSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEI 977

Query: 628 RKEGEILGIKQSG 640
           R  G ++G  Q G
Sbjct: 978 RGAGNMMGSSQHG 990


>gi|210632030|ref|ZP_03297170.1| hypothetical protein COLSTE_01063 [Collinsella stercoris DSM 13279]
 gi|210159746|gb|EEA90717.1| hypothetical protein COLSTE_01063 [Collinsella stercoris DSM 13279]
          Length = 1195

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 203/378 (53%), Gaps = 13/378 (3%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q  AI DI  DM     M R+L GDVG GKT VAL A    V+ G Q +++
Sbjct: 631  SFPYDETHDQLDAIADIKADMESTKPMDRLLCGDVGFGKTEVALRAAFKCVDGGRQVMVL 690

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILAQQHYE   +      + VE+++       +R+AL   A G+  ++IGTH L  
Sbjct: 691  CPTTILAQQHYETFFERFAPFGVEVEVLSRFRTPGQQRRALAAFAEGKVDVLIGTHRLLS 750

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              +  ++L LVI+DE+ RFGVQ + +L        VL ++ATPIPRT+ +   G  D+S 
Sbjct: 751  ADVNPHELGLVIIDEEQRFGVQHKEQLKNMREQIDVLTLSATPIPRTMQMAMSGVRDMSL 810

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
            IT  P GR+ +   +   +  D V   +++ +  G + Y++  +++          VER 
Sbjct: 811  ITTPPTGRRAVAVHVGEYD-PDVVSAAIRLEIGRGGQVYYVSNRVK-----TIDDAVERV 864

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              L     + I + HG+MS  + E VM  F      +LIATT++E GID   A+ +IIE+
Sbjct: 865  --LEAAPEARIGVAHGKMSPREVEDVMVQFATKKIDVLIATTIVESGIDNASANTLIIED 922

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
            ++  GLAQL+QL+GRVGR    +    ++    PL++ +  RL+ L   +D   G  IA 
Sbjct: 923  SQRLGLAQLYQLKGRVGRSATQAYAYFMFPGELPLTEEATARLTALSEFQDLGSGMRIAM 982

Query: 623  EDLKQRKEGEILGIKQSG 640
             DL+ R  G ++G +Q G
Sbjct: 983  RDLEIRGAGSLVGAEQHG 1000


>gi|259507006|ref|ZP_05749906.1| transcription-repair coupling factor [Corynebacterium efficiens
            YS-314]
 gi|259165458|gb|EEW50012.1| transcription-repair coupling factor [Corynebacterium efficiens
            YS-314]
          Length = 1215

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 136/429 (31%), Positives = 224/429 (52%), Gaps = 19/429 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G     +    +++  N P+  T+ Q 
Sbjct: 585  DWKNTKKKARAAVREIAGELVELYAKRQAAP--GHAFGPDTPWQKEMEDNFPYVETEDQM 642

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  + +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 643  LAIDAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHK 702

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++      + +  ++     A  ++ L  +A G+  I++GTH L Q  +Q+  L LV
Sbjct: 703  STFEERMAGFPVTIHGLSRFTSTAESKETLAGLASGEVDIVVGTHRLLQTGVQWKNLGLV 762

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    +   VL M+ATPIPRTL ++  G  +++ +   P  R PI
Sbjct: 763  IVDEEQRFGVEHKEHIKALRSHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPI 822

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
             T + P     +V   ++  L    + ++I  ++   EKK    R +V           +
Sbjct: 823  LTYVGPYED-KQVAASIRRELLRDGQVFFIHNKVADIEKKARELRDLVPE---------A 872

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QL
Sbjct: 873  RVVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 932

Query: 577  HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G
Sbjct: 933  HQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 992

Query: 632  EILGIKQSG 640
             +LG +QSG
Sbjct: 993  NVLGAEQSG 1001


>gi|254281663|ref|ZP_04956631.1| transcription-repair coupling factor [gamma proteobacterium
           NOR51-B]
 gi|219677866|gb|EED34215.1| transcription-repair coupling factor [gamma proteobacterium
           NOR51-B]
          Length = 1155

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 141/429 (32%), Positives = 221/429 (51%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R+       +A Q+  +  R++ ++  G     E     +     PF  T  Q 
Sbjct: 552 QWEKARRKASKRASDVAAQLLEVYARREARQ--GFAHAWEPDAWDRFCNQFPFEETPDQA 609

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI+ +  DM     M R++ GDVG GKT VA+ A   A   G Q  ++ P  +LAQQH+
Sbjct: 610 AAIEAVRNDMCAPGVMDRLVCGDVGFGKTEVAMRAAFLAARNGKQVAVLVPTTLLAQQHF 669

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              +       + VE+I+            +R+  G   I++GTH L Q   ++  L L+
Sbjct: 670 NSFRDRFAGWSVTVEVISRFKTAKDIAAVAKRVESGDVDILVGTHKLLQTDFRFNDLGLL 729

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+Q+  +        +L MTATPIPRTL +   G  D+S I   PA R  I
Sbjct: 730 IIDEEHRFGVKQKESIKALRAEIDILTMTATPIPRTLNMALGGLRDLSIIATPPARRLSI 789

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           KT I   N   + E + R  +    G + Y++  +++   ++      ++  +L      
Sbjct: 790 KTFIREHNTALVKEAVLRETL---RGGQVYYLHNEVKTIAQT-----AQKLQTLLPDL-- 839

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S+ I HG+M +++ E VM  F +    +L+ +T+IE GID+ +A+ IIIE A+ FGLAQL
Sbjct: 840 SVGIAHGQMREVELERVMSDFYHQRHHVLVCSTIIETGIDIPNANTIIIERADKFGLAQL 899

Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEG 631
           HQLRGRVGR    +   LL  P   L++++  RL  ++       G+++A  DL+ R  G
Sbjct: 900 HQLRGRVGRSHHQAYAYLLSPPRSSLTRDAEKRLEAIEAAGALGAGYMLATHDLEIRGAG 959

Query: 632 EILGIKQSG 640
           E+LG +QSG
Sbjct: 960 ELLGDEQSG 968


>gi|228995444|ref|ZP_04155114.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17]
 gi|228764305|gb|EEM13182.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17]
          Length = 1183

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 138/387 (35%), Positives = 216/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 621 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 680

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 681 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 740

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 741 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 800

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   I E IER    L+ G + Y++  ++E  E+K  
Sbjct: 801 RDLSVIETPPENRFPVQTYVVEYNPGLIREAIER---ELARGGQIYFLYNRVEDIERKAD 857

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF +G   +L++TT+IE G+D+ 
Sbjct: 858 EISMLVPE---------ARVTYAHGKMNESELESVMLSFLDGQHDVLVSTTIIETGVDIP 908

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 909 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 968

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 969 LGSGFKIAMRDLSIRGAGNLLGAEQHG 995


>gi|194337173|ref|YP_002018967.1| transcription-repair coupling factor [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309650|gb|ACF44350.1| transcription-repair coupling factor [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 1103

 Score =  217 bits (552), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 147/461 (31%), Positives = 246/461 (53%), Gaps = 22/461 (4%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           I L+ +  Q K +IG     +    ++   +  F  T  Q  AI D+ +DM + + M R+
Sbjct: 497 INLIKVYAQRKMQIGFGFAPDSIYMREFEASFIFDETPDQLKAIHDVKKDMQEPHPMDRL 556

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GD G GKT +A+ A   AVE+G Q  ++ P  IL+ QH E   +  +N  I + +++ 
Sbjct: 557 ICGDAGFGKTEIAMRAAFKAVESGKQVAVLTPTTILSHQHAESFTRRFENFPISIAVLSR 616

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +P+  ++K ++RIA G   I+IGTH L    + +  L L+++DE+  FGV+ + KL ++
Sbjct: 617 FVPRKEQQKVIKRIAEGTIDIVIGTHRLVSKDVLFKDLGLLVIDEEQHFGVEVKEKLREQ 676

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERL 475
                 L M+ATPIPRTL  + LG  D+S ++  P  R+P++T+I   +   I   I R 
Sbjct: 677 FPGVDTLTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQPVETLITDYDPALIQSAIRR- 735

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVM 534
             +  EG + +++  +I         S+ +   +L E   S+ I   HG++   + E +M
Sbjct: 736 -EIKREG-QVFFLHNRIA--------SLDDILQTLRELVPSARIVFAHGQLPPRELEKIM 785

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F      +LI+TT+I  G+D+ +A+ III  A+ FGL+ L+QLRGRVGR E  + C L
Sbjct: 786 MDFMQKEVDVLISTTIIGSGLDISNANTIIINRADMFGLSDLYQLRGRVGRSERKAYCYL 845

Query: 595 LYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM---PKFLI 646
           +  P   L K +  RL+V+++ TE   GF IA  DL  R  G +LG +QSG      F +
Sbjct: 846 IAPPLNTLKKEAVQRLAVIESFTELGSGFNIALRDLDIRGAGNLLGAEQSGYIHELGFDL 905

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            Q  L +++ E+   +  H+ + +    +   ++  +L + 
Sbjct: 906 YQKMLEETVAELKSTEFSHMFSAEGAKAARSAKTCDLLFFF 946


>gi|90021441|ref|YP_527268.1| transcription-repair coupling protein Mfd [Saccharophagus degradans
           2-40]
 gi|89951041|gb|ABD81056.1| transcription-repair coupling factor [Saccharophagus degradans
           2-40]
          Length = 1153

 Score =  217 bits (552), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 138/382 (36%), Positives = 208/382 (54%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q+ AI  + QDM     M R++ GDVG GKT VA+ A   AV+   Q  ++
Sbjct: 603 SFPFEETVDQQQAIDAVRQDMISAQPMDRLVCGDVGFGKTEVAMRAAFIAVQNSKQVAVL 662

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHYE  K    +  + VE+I+         +  +++  G+  I+IGTH L Q
Sbjct: 663 VPTTLLAQQHYENFKDRFADWPVNVEVISRFKSSKDISEIQKKLEAGKVDILIGTHKLIQ 722

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             + +  L L+I+DE+HRFGV+Q+  L    T   +L +TATPIPRTL +   G  D+S 
Sbjct: 723 GELIFPNLGLLIIDEEHRFGVRQKEALKALRTEVDILTLTATPIPRTLNMAMSGIRDLSI 782

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503
           I   PA R  +KT +   +   I E I R    +  G + Y++  ++   EK  ++ + +
Sbjct: 783 IATPPAKRLSVKTFVRQSDNAVIKEAILR---EIMRGGQLYYLHNEVSTIEKTAADLQEL 839

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V           + I + HG+M + + E+ M  F +    +L+ TT+IE GID+  A+ I
Sbjct: 840 VPE---------ARIRVAHGQMRERELEAAMSDFYHKRHNILVCTTIIETGIDIPSANTI 890

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GF 618
           II+ A+ FGLAQLHQLRGRVGR    +   LL  +   ++ ++  RL  +   +D   GF
Sbjct: 891 IIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPHKKAMTADAVKRLEAIAEAQDLGAGF 950

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 951 TLASHDLEIRGAGELLGDEQSG 972


>gi|126662926|ref|ZP_01733924.1| transcription-repair coupling factor [Flavobacteria bacterium
           BAL38]
 gi|126624584|gb|EAZ95274.1| transcription-repair coupling factor [Flavobacteria bacterium
           BAL38]
          Length = 1087

 Score =  217 bits (552), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 142/465 (30%), Positives = 241/465 (51%), Gaps = 20/465 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++  A  + +A  +  L  +++  K  G   + +  + +++  +  +  T  Q +
Sbjct: 479 WKTLKQKTKARIKHIAFNLIQLYAKRRLDK--GFQFSPDSYLQKELESSFIYEDTPDQIT 536

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM  +  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  ILA QHY 
Sbjct: 537 ATADVKADMENERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAYQHYR 596

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + V  +        + + L+++  G+  I+IGTH L   ++ +  L L+I
Sbjct: 597 TFSERLKDMPVTVSYVNRFRTAKQKSETLQKLQEGKVDILIGTHQLVNKNVVFKDLGLLI 656

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL   AT    L +TATPIPRTL  + +   D+S IT  P  R PI+
Sbjct: 657 IDEEQKFGVNVKDKLKTIATNVDTLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIE 716

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +I  N  + + + +   +  G + ++I  +IE  KE     +++R         + + 
Sbjct: 717 THVIRFNE-EAIRDAISYEIQRGGQVFFINNRIENIKE--VAGMIQRLVP-----GAKVG 768

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E +M +F  G   +L+ATT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 769 IGHGQMEGKKLEELMLAFMEGEFDVLVATTIIESGLDVPNANTIFINNANNFGLSDLHQM 828

Query: 580 RGRVGRGEEISSCILLYHPPLS------KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           RGRVGR  + + C  +  PP S      +   T L        GF IA +DL+ R  G++
Sbjct: 829 RGRVGRSNKKAFCYFI-TPPYSMMTGEAQKRITALEQFSELGSGFNIAMKDLEIRGAGDL 887

Query: 634 LGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           LG +QSG      F   Q  +++++ E+   + K +  ++ D+ +
Sbjct: 888 LGGEQSGFINEIGFDTYQKIMNEAIDELKENEFKDLYQEENDIET 932


>gi|121535095|ref|ZP_01666912.1| transcription-repair coupling factor [Thermosinus carboxydivorans
           Nor1]
 gi|121306345|gb|EAX47270.1| transcription-repair coupling factor [Thermosinus carboxydivorans
           Nor1]
          Length = 1109

 Score =  217 bits (552), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 148/434 (34%), Positives = 230/434 (52%), Gaps = 29/434 (6%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRK---QFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           EW  + +R + A  +L    IAL   R+    F  E   P   E + A       P+  T
Sbjct: 499 EWQKATSRAKAAVADLAKELIALYAARQVTPGFAFEPDTPWQKEFEEA------FPYEET 552

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI +I +DM     M R+L GDVG GKT VA+ A   AV +G Q  ++ P  +LA
Sbjct: 553 PDQLQAISEIKRDMEAPRPMDRLLCGDVGFGKTEVAIRAAFKAVMSGKQVAVLVPTTVLA 612

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           QQHY+           +V++I+       ++  L ++  GQ  ++IGTH L    +Q+  
Sbjct: 613 QQHYQTFSSRFAGFGPVVDVISRFRSPKEQKATLAKVRAGQVDVLIGTHRLLNPDVQFKD 672

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+IVDE+ RFGV Q+ KL +  T   VL ++ATPIPRTL ++ +G  D+S I   P  
Sbjct: 673 LGLLIVDEEQRFGVAQKEKLKKWRTNIDVLTLSATPIPRTLHMSLVGARDMSIIETPPEE 732

Query: 455 RKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLH 511
           R P++T ++  +  +EV+ + ++  L  G + Y++  +++  +K  S    ++       
Sbjct: 733 RYPVQTYVVEYH--EEVVRDAIRRELRRGGQVYFVYNRVQTIDKMHSRLSEILP------ 784

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               + I + HG+MS+   E VM  F  G   +L+ T++IE G+DV +A+ II+ +A+ F
Sbjct: 785 ---DARIGVAHGQMSEDRLERVMLDFYEGNYDILVCTSIIESGLDVPNANTIIVYDADKF 841

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLK 626
           GLAQL+Q+RGRVGR   ++     Y     L++ +  RL  +K   +   GF IA  DL+
Sbjct: 842 GLAQLYQMRGRVGRTHRMAYAYFTYQRDKVLTEVAEKRLQAIKEFAELGAGFKIAMRDLE 901

Query: 627 QRKEGEILGIKQSG 640
            R  G ILG +Q G
Sbjct: 902 IRGAGNILGPQQHG 915


>gi|332971077|gb|EGK10047.1| transcription-repair coupling factor [Desmospora sp. 8437]
          Length = 1181

 Score =  217 bits (552), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 215/378 (56%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A   G Q  ++ P
Sbjct: 621 PYEETADQLRSIEEIKKDMEKTQPMDRLLCGDVGYGKTEVAIRAAFKATMDGKQVAVLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQH+E  ++   +  + + +++    +  +R+ ++ +  G   I+IGTH +    
Sbjct: 681 TTILAQQHFETFRERFSDFPVEIRVLSRFRSRKEQRETIQGVNDGTVDIVIGTHRILSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +Q+  L L+IVDE+ RFGV+ + K+ +  +   VL +TATPIPRTL ++ +G  D+S I 
Sbjct: 741 VQFKDLGLLIVDEEQRFGVKHKEKIKKIKSNIDVLTLTATPIPRTLHMSMMGVRDLSVIE 800

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T ++  +   + E IER    ++ G + Y++  Q++     N   + E+ 
Sbjct: 801 TPPENRFPVQTYVLEYSAALVREAIER---EMARGGQVYFLYNQVQ-----NIDKMAEQI 852

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L     + IA+ HG+M++ + E VM  F +G   +L++TT+IE G+D+ + + +II N
Sbjct: 853 RMLVPD--ARIAVAHGQMAETELEKVMLDFLDGETDVLVSTTIIETGVDIPNVNTLIIYN 910

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+QLRGRVGR   I+     Y  +  LS+ +  RL  +K  TE   GF IA 
Sbjct: 911 ADRMGLSQLYQLRGRVGRSNRIAYAYFTYQRNKVLSETAEKRLQAIKEFTELGSGFKIAM 970

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G +LG +Q G
Sbjct: 971 RDLAIRGAGNLLGAEQHG 988


>gi|15639335|ref|NP_218784.1| transcription-repair coupling factor (trcF) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025577|ref|YP_001933349.1| transcription-repair coupling factor [Treponema pallidum subsp.
           pallidum SS14]
 gi|3322623|gb|AAC65332.1| transcription-repair coupling factor (trcF) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018152|gb|ACD70770.1| transcription-repair coupling factor [Treponema pallidum subsp.
           pallidum SS14]
          Length = 1140

 Score =  217 bits (552), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 136/376 (36%), Positives = 214/376 (56%), Gaps = 13/376 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q   I+++ QDM +   M R++ GDVG GKT +A+ A   AV  G Q V + P
Sbjct: 597 PYEETDDQRICIEEVKQDMQEAVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQVVFLTP 656

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +L +QH+  I    ++  + +E ++  +P++ ++  L ++AHG   +I+GTH L Q  
Sbjct: 657 TTLLVEQHFRTICNRFKHFPVRIEKLSRFVPKSEQKDILAKLAHGDIDLIVGTHRLIQKD 716

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+I+DE+ RFGVQ + KL Q  T    L ++ATPIPRTL +  L   D+S +T
Sbjct: 717 VSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHMGMLKIRDMSLLT 776

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P GR PI+TVI   +  + V   ++  L    + +++  +IE     N  SV      
Sbjct: 777 TPPEGRLPIETVIQQFDP-NLVATAIRKELDREGQIFYLHNRIE-----NLESVKCMLQK 830

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L      SI + H  M   + E + + F   T +LL++TT+IE GIDV +A+ III+ A+
Sbjct: 831 LVPEL--SICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDRAD 888

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEED 624
            +G++QL+QLRGRVGR ++ +   LLY+    LS  +  RL V+ +  D   GF +A +D
Sbjct: 889 MYGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVALKD 948

Query: 625 LKQRKEGEILGIKQSG 640
           ++ R  G +LG +QSG
Sbjct: 949 MEIRGVGNLLGKEQSG 964


>gi|152973901|ref|YP_001373418.1| transcription-repair coupling factor [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022653|gb|ABS20423.1| transcription-repair coupling factor [Bacillus cytotoxicus NVH
           391-98]
          Length = 1176

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 137/382 (35%), Positives = 213/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+
Sbjct: 619 SFPYQETEDQLRSIEEIKKDMERSRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAIL 678

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +  
Sbjct: 679 VPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKEQNETIKGLKDGTVDIVIGTHRILS 738

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S 
Sbjct: 739 KDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMLGVRDLSV 798

Query: 448 ITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503
           I   P  R P++T ++  N   I E IER    L+ G + Y++  ++E  E+K      +
Sbjct: 799 IETPPENRFPVQTYVVEYNPALIREAIER---ELARGGQIYFLYNRVEDIERKADEISML 855

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +
Sbjct: 856 VPE---------ARVTYAHGKMNESELESVMLSFLEGQYDVLVSTTIIETGVDIPNVNTL 906

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGF 618
           I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE   GF
Sbjct: 907 IVYDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGF 966

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 967 KIAMRDLSIRGAGNLLGAEQHG 988


>gi|172040264|ref|YP_001799978.1| transcription-repair coupling factor [Corynebacterium urealyticum DSM
            7109]
 gi|171851568|emb|CAQ04544.1| transcription-repair coupling factor [Corynebacterium urealyticum DSM
            7109]
          Length = 1249

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 137/429 (31%), Positives = 228/429 (53%), Gaps = 19/429 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +AG++  L  ++Q     G     +    +++    PF+ T+ Q 
Sbjct: 631  DWKNTKRKARKAVREIAGELVQLYAQRQAAP--GYAFAPDSPWQREMEEAFPFTETEDQF 688

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ +  DM +   M R++ GDVG GKT VA+ A   AV++G Q  ++ P  +LAQQH 
Sbjct: 689  NAIEAVKSDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQHM 748

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +  +   Q+    +  ++     A  ++ L+ +A G   I++GTH L Q  + +  L L+
Sbjct: 749  KTFRDRMQDFPTRIAELSRFTTPAQSKEILKGLAEGTIDIVVGTHRLLQTGVTWKNLGLI 808

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 809  IVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPQDRHPV 868

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
             T  +       V   ++  L    + ++I  +++  EK   + RS+V           +
Sbjct: 869  LT-YVGAQEDKHVAAAIRRELLRDGQVFYIHNRVKSIEKAAEHIRSLVPE---------A 918

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HG+MS+   E+ ++ F N    +L+ TT++E G+D+ +A+ +I+ENA H GL+QL
Sbjct: 919  RVVVAHGQMSEEQLETTVEGFWNREFDILVCTTIVETGLDISNANTLIVENAHHMGLSQL 978

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR  E +    LY     L++ SY RLS +    +   G  +A +DL+ R  G
Sbjct: 979  HQLRGRVGRSRERAYAYFLYPKGEVLTETSYDRLSTIAQNNELGAGMAVAMKDLEMRGAG 1038

Query: 632  EILGIKQSG 640
             +LG +QSG
Sbjct: 1039 NVLGAEQSG 1047


>gi|33865711|ref|NP_897270.1| transcriptional-repair coupling factor [Synechococcus sp. WH 8102]
 gi|33632881|emb|CAE07692.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 8102]
          Length = 1192

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 138/422 (32%), Positives = 227/422 (53%), Gaps = 22/422 (5%)

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            G     +G    ++  + P+ PT  Q  A  D+ +DM +   M R++ GDVG GKT VA+
Sbjct: 601  GFAFPSDGPWQNELEESFPYEPTPDQLKATADVKRDMEKAEPMDRLVCGDVGFGKTEVAI 660

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A+  A+ AG Q  ++AP  +LAQQH+  + +      I V ++      + R+  LE +
Sbjct: 661  RAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTASERKTILEGL 720

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
              G    ++GTH L      + +L L++VDE+ RFGV Q+ K+        VL ++ATPI
Sbjct: 721  KGGTIDAVVGTHQLLGKGASFQQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPI 780

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            PRTL ++  G  ++S IT  P  R+PIKT +  ++  + V   ++  L  G + +++ P+
Sbjct: 781  PRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALD-PEAVRSAIRQELDRGGQVFYVVPR 839

Query: 492  IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +E  E   +  R ++     L         + HG+M++ + ES M +F  G   +++ TT
Sbjct: 840  VEGIEDVAAGLREMLPGLKLL---------VAHGQMAEGELESAMVAFNAGEADVMLCTT 890

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYT 606
            ++E G+D+   + I+IE+A  FGLAQL+QLRGRVGR   I +   L++P    LS N+  
Sbjct: 891  IVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGR-SGIQAHAWLFYPGNGSLSDNARQ 949

Query: 607  RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660
            RL  ++       G+ +A  D++ R  G +LG++QSG  +   F +    L +SL EI  
Sbjct: 950  RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQG 1009

Query: 661  KD 662
            +D
Sbjct: 1010 QD 1011


>gi|116626459|ref|YP_828615.1| transcription-repair coupling factor [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229621|gb|ABJ88330.1| transcription-repair coupling factor [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 1141

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 209/377 (55%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           FSPT+ Q +AI +I +DM     M R+L GDVG GKT V + A   A+  G Q V++AP 
Sbjct: 600 FSPTRDQLTAISEIKRDMESTQPMDRLLCGDVGYGKTEVVMRAAFKALGDGKQVVVLAPT 659

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E  K+  Q   + VE+ +        +  L  +A G+  I IGTH L    +
Sbjct: 660 TVLAFQHFETFKRRFQPFPVRVEMFSRFRSPKEIKAGLVDLAEGKIDIAIGTHRLLSQDV 719

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
               L LV+VDE+ RFGV+ + +L Q   A  V+ M+ATPIPRTL ++ LG  D+S I  
Sbjct: 720 VMRDLGLVLVDEEQRFGVKHKERLKQMKRAVDVISMSATPIPRTLHMSLLGLRDMSVIET 779

Query: 451 KPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R  I TV+ P     E+I + L++ L  G + Y++  +++        S+  R  S
Sbjct: 780 PPKDRLAIHTVVAPYQ--PELIRQALELELGRGGQVYFLHNRVD--------SIWMRAAS 829

Query: 510 LHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L E    + I + HG+M + + E  M  F      +L+ TT+IE G+D+  A+ +IIENA
Sbjct: 830 LQELVPGARIGVGHGQMGEAELEKTMLQFMRHEFDILVCTTIIENGLDIPLANTMIIENA 889

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEE 623
           E +GL++L+QLRGRVGR    +   LL  P   L++ +  RL+ LK   D   GF IA  
Sbjct: 890 ERYGLSELYQLRGRVGRSNRRAYAYLLVPPDTELTEIARKRLAALKEFSDLGAGFKIAAL 949

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G +LG +Q G
Sbjct: 950 DLELRGAGNLLGGEQHG 966


>gi|78485512|ref|YP_391437.1| transcription-repair coupling factor [Thiomicrospira crunogena
           XCL-2]
 gi|78363798|gb|ABB41763.1| transcription-repair coupling factor [Thiomicrospira crunogena
           XCL-2]
          Length = 1159

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 139/407 (34%), Positives = 218/407 (53%), Gaps = 15/407 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q +   G     + +   +     PF  T  QE+AI+ +L DM     M R++ 
Sbjct: 581 LLDIYAQREARPGYAFQTDEEAYARFRAGFPFEETPDQEAAIEAVLSDMKSDKPMDRLIC 640

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   A  +G Q  ++ P  +L+QQH E  K    +  I +E ++   
Sbjct: 641 GDVGFGKTEVAMRAAFVAAYSGKQVAVLVPTTLLSQQHLENFKNRFADWPIRIEGLSRFQ 700

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                ++ +E + + Q  IIIGTH + Q+ +Q+  L L+I+DE+HRFGV+Q+ +L +  T
Sbjct: 701 SAKETKQIVEAVKNNQVDIIIGTHKIIQNDMQFGNLGLIIIDEEHRFGVRQKEQLKKLRT 760

Query: 420 APHVLLMTATPIPRTLVLTSLGDI-DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
              V+ MTATPIPRTL + ++ D+ D+S I   PA R  ++T +   N  D V E     
Sbjct: 761 EVDVMTMTATPIPRTLNM-AMNDLRDLSIIATAPAKRLAVQTFVQDWNP-DVVKEACLRE 818

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +  G + Y +   +++        + E   +L     + +   HG+M + + E VM +F 
Sbjct: 819 IRRGGQIYLLFNNVDK-----IEQMAEEIQALLPE--AKVETAHGQMHERELEQVMQNFY 871

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +    +L+ TT+IE GID+  A+ I+I  A+ FGLAQLHQLRGRVGR    +   L    
Sbjct: 872 HRRFNILVCTTIIETGIDIPTANTILIHRADKFGLAQLHQLRGRVGRSHHKAYAYLFTAG 931

Query: 599 P--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
              ++K++  RL+ +   +    GF++A  DL+ R  GE+LG  QSG
Sbjct: 932 KALMTKDAEKRLTAIAKHDTLGAGFMLASHDLEIRGAGELLGDGQSG 978


>gi|25027590|ref|NP_737644.1| putative transcription-repair coupling factor [Corynebacterium
            efficiens YS-314]
 gi|23492872|dbj|BAC17844.1| putative transcription-repair coupling factor [Corynebacterium
            efficiens YS-314]
          Length = 1218

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 136/429 (31%), Positives = 224/429 (52%), Gaps = 19/429 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G     +    +++  N P+  T+ Q 
Sbjct: 588  DWKNTKKKARAAVREIAGELVELYAKRQAAP--GHAFGPDTPWQKEMEDNFPYVETEDQM 645

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  + +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 646  LAIDAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHK 705

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++      + +  ++     A  ++ L  +A G+  I++GTH L Q  +Q+  L LV
Sbjct: 706  STFEERMAGFPVTIHGLSRFTSTAESKETLAGLASGEVDIVVGTHRLLQTGVQWKNLGLV 765

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    +   VL M+ATPIPRTL ++  G  +++ +   P  R PI
Sbjct: 766  IVDEEQRFGVEHKEHIKALRSHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPI 825

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
             T + P     +V   ++  L    + ++I  ++   EKK    R +V           +
Sbjct: 826  LTYVGPYED-KQVAASIRRELLRDGQVFFIHNKVADIEKKARELRDLVPE---------A 875

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QL
Sbjct: 876  RVVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 935

Query: 577  HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G
Sbjct: 936  HQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 995

Query: 632  EILGIKQSG 640
             +LG +QSG
Sbjct: 996  NVLGAEQSG 1004


>gi|167036600|ref|YP_001664178.1| transcription-repair coupling factor [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115027|ref|YP_004185186.1| transcription-repair coupling factor [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855434|gb|ABY93842.1| transcription-repair coupling factor [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928118|gb|ADV78803.1| transcription-repair coupling factor [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 1165

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 240/462 (51%), Gaps = 36/462 (7%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFK 248
           DL+QK   P+         NP K       EW    R+     E LA  +  L  ++Q  
Sbjct: 551 DLVQKYVGPT--------DNPPKLNKLGGSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMV 602

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  G   + +    ++     P+  T+ Q   IK+I +DM +   M R+L GDVG GKT 
Sbjct: 603 K--GHAFSPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTE 660

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           VAL A   AV  G Q   + P  ILA QHY  FI+++ +   + +E+++       + K 
Sbjct: 661 VALRAAFKAVADGKQVAFLCPTTILAYQHYANFIERFKE-FPVKIEMLSRFRTPKEQSKI 719

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           ++ +A G   II+GTH L Q+ I++  L L+I+DE+ RFGV  + K+ +      VL ++
Sbjct: 720 IKELAEGNIDIIVGTHRLLQNDIKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLS 779

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKA 485
           ATPIPRTL ++ +G  D+S +   P  R P++T ++  N   I + I R    ++ G + 
Sbjct: 780 ATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILR---EIARGGQV 836

Query: 486 YWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y++  ++   EK  S  + +V             +A+ HG+M +   E VM  F NG   
Sbjct: 837 YFVYNRVNGIEKMASFVKDLVP---------GCRVAVAHGQMEESQLEKVMIDFLNGEYD 887

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LS 601
           +L++TT+IE G+D+ + + II+ +A+  GL+QL+QLRGRVGR   ++     Y     LS
Sbjct: 888 VLVSTTIIETGLDIPNVNTIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLS 947

Query: 602 KNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
           + +  RL  +K  TE   GF IA  DL+ R  G +LG +Q G
Sbjct: 948 EVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHG 989


>gi|225375822|ref|ZP_03753043.1| hypothetical protein ROSEINA2194_01454 [Roseburia inulinivorans DSM
            16841]
 gi|225212257|gb|EEG94611.1| hypothetical protein ROSEINA2194_01454 [Roseburia inulinivorans DSM
            16841]
          Length = 1183

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 139/408 (34%), Positives = 228/408 (55%), Gaps = 19/408 (4%)

Query: 276  SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
             Q+ AI+   +DM     M R++ GDVG GKT +A+ A   AV+ G Q   + P  ILAQ
Sbjct: 630  DQDLAIEATKKDMESTKIMDRLICGDVGYGKTEIAIRAAFKAVQDGKQVAFLVPTTILAQ 689

Query: 336  QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
            QHY    +  ++  + ++++        ++K LE++  GQ  IIIGTH L    + +  L
Sbjct: 690  QHYNNFVQRMKDFPVNIDLLCRFRSAGEQKKTLEKLKKGQVDIIIGTHRLLSKDVVFKDL 749

Query: 396  ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
             L+++DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S + E P  R
Sbjct: 750  GLLMIDEEQRFGVTHKEKIKQLKNNIDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPMDR 809

Query: 456  KPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             PI+T ++  N   + E I R    L+ G +AY++  +++E        V  +   L   
Sbjct: 810  IPIQTYVMEYNEELVREAISR---ELARGGQAYYVYNRVKE-----IADVAAKIAELVPE 861

Query: 514  FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++A  HG+M + + E++M  F NG   +L++TT+IE G+D+ + + +II +A++ GL
Sbjct: 862  --ANVAYAHGQMKETELENIMYKFINGEIDVLVSTTIIETGLDISNVNTMIIHDADNMGL 919

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQR 628
            +QL+QLRGRVGR    +   L+Y     L + +  RL+ +K  TE   GF IA  DL+ R
Sbjct: 920  SQLYQLRGRVGRSNRTAYAFLMYKRDKMLKEVAEKRLAAIKEYTELGSGFKIAMRDLEIR 979

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
              G +LG +Q G  + +    +L+  +L  A K+AK +  ++   T++
Sbjct: 980  GAGNLLGAEQHGHMEAV--GYDLYCKMLNEAVKEAKGMKQEESFDTTI 1025


>gi|227888873|ref|ZP_04006678.1| transcription-repair coupling factor [Lactobacillus johnsonii ATCC
           33200]
 gi|227850566|gb|EEJ60652.1| transcription-repair coupling factor [Lactobacillus johnsonii ATCC
           33200]
          Length = 1165

 Score =  216 bits (551), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 138/431 (32%), Positives = 232/431 (53%), Gaps = 21/431 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   +   +  E +A  +  L  +++ +K  G   + +  + ++     P+  T  Q 
Sbjct: 563 EWTKTKKRVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKEFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM     M R+L GDVG GKT VAL A   A+  G Q   +AP  ILAQQH+
Sbjct: 621 RSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E ++   ++  +   +++        ++ +E +  G+  +++GTH L    +Q+  L L+
Sbjct: 681 ETMQDRFKDFPVNCALLSRFQTPTEVKEIVEGVKSGKIDMVVGTHRLLSKDVQFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IIDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T +  +  +  ++   + VL E K+    +++  +I+     +   VV +   L     
Sbjct: 801 QTYV--MEEMPSIVR--EAVLREMKRNGQVFFLHNRID-----DIDKVVSQLEELIPE-- 849

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +I+E+A+H+GL+Q
Sbjct: 850 AKIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYGLSQ 909

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGR+GR   ++    LY P   L++    RLS +++ TE   GF IA  DL  R  
Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGA 969

Query: 631 GEILGIKQSGM 641
           G +LG +Q G 
Sbjct: 970 GNMLGKQQHGF 980


>gi|312876096|ref|ZP_07736084.1| DEAD/DEAH box helicase domain protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797082|gb|EFR13423.1| DEAD/DEAH box helicase domain protein [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 643

 Score =  216 bits (551), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 140/429 (32%), Positives = 234/429 (54%), Gaps = 18/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++     E++A  +  L  ++Q  K  G   + +    ++     P++ T+ Q 
Sbjct: 56  EWQKQKQKVRKSLEIVAKDLVELYAKRQLHK--GFKFSKDTLWQKEFEEKFPYTETEGQL 113

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I +DM  +  M RIL GDVG GKT VA+ A   AV    Q  ++ P  ILAQQHY
Sbjct: 114 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 173

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                  ++  + +E+++    +  ++K ++ +  G   I+IGTH L    +++  L L+
Sbjct: 174 MTFSARMKDFPVTIEVLSRLKNETQQKKIIKGLKEGTIDIVIGTHRLLSSDVKFKDLGLL 233

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+H+FGV+ + K+ +  T   VL +TATPIPRTL +  LG  D+S I + P  R P+
Sbjct: 234 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRYPV 293

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++  N   I E I R    +S G + +++  +I++ +E     V  +  +L    + 
Sbjct: 294 QTFVLEYNERIIKEAILR---EISRGGQVFYLYNRIKDIQE-----VAAKLQNLVGD-SI 344

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A  HG+M + + E V+  F  G   +L+ TT+IE G+D+ + + +I+++++  GLAQL
Sbjct: 345 KVACAHGQMPEEELERVLLDFIEGRYDVLVCTTIIESGVDMPNVNTLIVKDSDRLGLAQL 404

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGRVGR   ++     +     LS+ +  RL+ +K  TE   GF IA  DL+ R  G
Sbjct: 405 YQLRGRVGRSNRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRGAG 464

Query: 632 EILGIKQSG 640
            +LG  Q G
Sbjct: 465 SVLGKLQHG 473


>gi|325288390|ref|YP_004264571.1| transcription-repair coupling factor [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324963791|gb|ADY54570.1| transcription-repair coupling factor [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 1182

 Score =  216 bits (551), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 142/428 (33%), Positives = 229/428 (53%), Gaps = 17/428 (3%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  + +R R A  E+    I L   R+  K   G   + +    ++     P+  T  Q
Sbjct: 574 EWNKAKSRVRSAVKEMAIDLIELYAKRESSK---GYVFSADNHWQKEFEDKFPYEETADQ 630

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +I++I +DM +   M R+L GDVG GKT VA+ A   AV  G Q  I+ P  ILAQQH
Sbjct: 631 LQSIQEIKKDMMKSKVMDRLLCGDVGYGKTEVAMRAAFKAVADGKQVAILVPTTILAQQH 690

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y   ++   +  + +E+I+       +++ +  +  G   IIIGTH L  + I +  L L
Sbjct: 691 YTTFQERFMDYPVKIEMISRFRTAKEQKQIIRGLKDGTIDIIIGTHKLVSEGIDFKDLGL 750

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           ++VDE+ RFGV  + K+    T   VL ++ATPIPRTL ++ +G  D+S I+  P  R P
Sbjct: 751 LVVDEEQRFGVTHKEKIKALKTNVDVLTLSATPIPRTLQMSLVGLRDMSVISTPPDDRYP 810

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           ++T +   N  D V + ++  +  G + +++  +IE     +   V+    SL     + 
Sbjct: 811 VQTFVAEFNP-DMVRDAVRREIHRGGQVFYVHNRIE-----SLDRVLRMLKSLVPE--AK 862

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
             ++HG+M++   E+ M SF      +LI TT+IE G+D+ + + +I++ A+ FGL+QL+
Sbjct: 863 CGVVHGQMNETQLENEMISFLEKEKDILICTTIIETGLDMANVNTLIVDEADRFGLSQLY 922

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGE 632
           QLRGRVGR    +    LY P   L++ +  RLS ++  TE   GF +A  DL+ R  G 
Sbjct: 923 QLRGRVGRSNRKAYAYFLYQPSKILTEEAEKRLSTIREFTEFGSGFKVAMRDLEIRGAGS 982

Query: 633 ILGIKQSG 640
           ++G +Q G
Sbjct: 983 LIGGEQHG 990


>gi|209964568|ref|YP_002297483.1| transcription-repair coupling factor [Rhodospirillum centenum SW]
 gi|209958034|gb|ACI98670.1| transcription-repair coupling factor [Rhodospirillum centenum SW]
          Length = 1209

 Score =  216 bits (551), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 145/436 (33%), Positives = 228/436 (52%), Gaps = 25/436 (5%)

Query: 239  ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
            ALL +  +       P+ V      +     P++ T  Q  AI+D+L D+S    M R++
Sbjct: 586  ALLRIAAERALRTAPPVAVPDGAWDEFCARFPYAETDDQLHAIEDVLGDLSSGRPMDRLV 645

Query: 299  QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
             GDVG GKT VAL A   AV  G Q  ++ P  +LA+QHY   ++      + +  ++  
Sbjct: 646  CGDVGFGKTEVALRAAFLAVMNGMQVAVVVPTTLLARQHYRTFEQRFAGLPVRLGQLSRL 705

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                   +    +A G   I++GTHAL   S+ + +L +VIVDE+  FGV+Q+ +L +  
Sbjct: 706  ATAKETAQTKAGLADGTVDIVVGTHALLSKSVDFKRLGMVIVDEEQHFGVKQKERLKELR 765

Query: 419  TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               HVL +TATPIPRTL L   G  ++S I   P  R  ++T ++P    D V+ R + +
Sbjct: 766  ADIHVLTLTATPIPRTLQLALSGVRELSLIATPPVDRLAVRTFVLP---YDPVVIR-EAI 821

Query: 479  LSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII--HGRMSDIDKESV 533
            L E   G +++++CP+IE+         +ER     E     + ++  HG+M     E V
Sbjct: 822  LREHYRGGQSFYVCPRIED---------LERVRLQLEELVPEVKVVVAHGQMPASQLEEV 872

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            M +F      +L+AT +IE G+D+  A+ +++  A+ FGLAQL+Q+RGRVGR +      
Sbjct: 873  MTAFDEHKYDVLLATNIIESGLDIPSANTLVVHRADLFGLAQLYQVRGRVGRAKVRGYAY 932

Query: 594  LLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            L Y P   LS  +  RL V++  +    GF +A  D+  R  G +LG +QSG  + +   
Sbjct: 933  LTYQPRTVLSATAQQRLHVIETLDSLGAGFQLASHDMDIRGAGNLLGEEQSGHIREVGV- 991

Query: 649  PELHDSLLEIARKDAK 664
             EL+  +LE A  DA+
Sbjct: 992  -ELYQQMLEEAVADAR 1006


>gi|116074923|ref|ZP_01472184.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916]
 gi|116068145|gb|EAU73898.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916]
          Length = 1194

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 137/421 (32%), Positives = 226/421 (53%), Gaps = 20/421 (4%)

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            G    ++G    ++  + P+ PT  Q  A  ++ +DM +   M R++ GDVG GKT VA+
Sbjct: 603  GFAFPIDGPWQTELEDSFPYEPTPDQLKATAEVKRDMEKSQPMDRLVCGDVGFGKTEVAI 662

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A+  A+ AG Q  ++AP  +LAQQH+  + +      I V ++        R+  LE +
Sbjct: 663  RAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTAGERKTILEGL 722

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
              G    ++GTH L   S  + KL L++VDE+ RFGV Q+ K+        VL ++ATPI
Sbjct: 723  KKGTIDAVVGTHQLLSKSTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPI 782

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            PRTL ++  G  ++S IT  P  R+PIKT +  ++  + V   ++  L  G + +++ P+
Sbjct: 783  PRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDE-EAVRSAIRQELDRGGQVFYVVPR 841

Query: 492  IEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            ++         + E    L E      + + HG+M++ + ES M +F  G   +++ TT+
Sbjct: 842  VQ--------GIEEVAGKLREMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTI 893

Query: 551  IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTR 607
            +E G+D+   + I+IE+A  FGLAQL+QLRGRVGR   I +   L++P    LS  +  R
Sbjct: 894  VESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGR-SGIQAHAWLFYPGDASLSDAARQR 952

Query: 608  LSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARK 661
            L  ++       G+ +A  D++ R  G +LG++QSG  +   F +    L +SL EI  +
Sbjct: 953  LRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQ 1012

Query: 662  D 662
            D
Sbjct: 1013 D 1013


>gi|296329557|ref|ZP_06872043.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305672754|ref|YP_003864425.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153300|gb|EFG94163.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305410997|gb|ADM36115.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 1177

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 135/380 (35%), Positives = 213/380 (56%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I +I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P
Sbjct: 621 PYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE I +  Q+  I + +++    +    + ++ + +G   I+IGTH L    
Sbjct: 681 TTILAQQHYETITERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K      +V 
Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVEDIERKADEISMLVP 857

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +A  HG+M++ + E+VM +F  G   +L++TT+IE G+D+ + + +I+
Sbjct: 858 ---------DAKVAYAHGKMTENELETVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIV 908

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            +A+  GL+QL+QLRGRVGR   ++     Y     L++ +  RL  +K  TE   GF I
Sbjct: 909 FDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKI 968

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +Q G
Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988


>gi|148242564|ref|YP_001227721.1| transcription-repair coupling factor [Synechococcus sp. RCC307]
 gi|147850874|emb|CAK28368.1| Transcription-repair coupling factor [Synechococcus sp. RCC307]
          Length = 1183

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 137/422 (32%), Positives = 230/422 (54%), Gaps = 22/422 (5%)

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            G    V+G    ++  + P+ PT  Q  AI ++ +DM Q   M R++ GDVG GKT VAL
Sbjct: 592  GFAFPVDGPWQNELEDSFPYEPTPDQLKAITEVKRDMEQGKPMDRLVCGDVGFGKTEVAL 651

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A+  AV AG Q  ++AP  +LAQQH+  + +      I V ++      + R++ L+ +
Sbjct: 652  RAIFKAVTAGRQTALLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTASERKEILKGL 711

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            + G   +++GTH L      + +L L++VDE+ RFGV Q+ K+        VL ++ATPI
Sbjct: 712  SDGAIDVVVGTHQLLGKGTSFKQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPI 771

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            PRTL ++  G  ++S IT  P  R+PIKT +  ++  + V   ++  L  G + +++ P+
Sbjct: 772  PRTLYMSLSGVREMSLITTPPPLRRPIKTHLASLDE-EAVRSAIRQELDRGGQVFYVVPR 830

Query: 492  IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +E  E+     R ++     L         + HG+M + + ES M +F  G   +++ TT
Sbjct: 831  VEGIEEVAGGLRQMLPGLRLL---------VAHGQMPEGELESAMVAFNAGEADVMLCTT 881

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYT 606
            ++E G+D+   + I+IE+++ FGL+QL+QLRGRVGR   I +   L++P    LS  +  
Sbjct: 882  IVESGLDIPRVNTILIEDSQKFGLSQLYQLRGRVGR-SGIQAHAWLFYPGDASLSDAARQ 940

Query: 607  RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660
            RL  ++       G+ +A  D++ R  G +LG++QSG  +   F +    L + L EI  
Sbjct: 941  RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQEELAEIRG 1000

Query: 661  KD 662
            +D
Sbjct: 1001 QD 1002


>gi|291561352|emb|CBL40151.1| transcription-repair coupling factor [butyrate-producing bacterium
            SS3/4]
          Length = 1201

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 147/429 (34%), Positives = 231/429 (53%), Gaps = 19/429 (4%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EWT +  + R A  E+    + L   R+  +     P  V  K  +++    P+  T  Q
Sbjct: 599  EWTKTKTKVRTAVREIAKELVELYAARQDAEGFQYGPDTVWQKEFEEMF---PYDETDDQ 655

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +AI D  +DM  K  M R++ GDVG GKT +AL A   AV+   Q V + P  ILAQQ 
Sbjct: 656  LTAIDDTKRDMESKKIMDRLICGDVGYGKTEIALRAAFKAVQEEKQVVYLVPTTILAQQI 715

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y    +  ++  + V++++        +K +E +  G   II+GTH +    +Q+  L L
Sbjct: 716  YNTFVQRMKDFPVRVDMMSRFRTPGEMKKTVEGLKKGYVDIIVGTHRVLSKDVQFKNLGL 775

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +IVDE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S + E P  R P
Sbjct: 776  LIVDEEQRFGVTHKEKIKQMKQNVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPVDRVP 835

Query: 458  IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I+T ++  N  DE+I E +   L  G + Y++  ++     +N   V     SL     +
Sbjct: 836  IQTYVMEYN--DEMIREAIHRELGRGGQVYYVYNRV-----NNIDEVANHVASLVPD--A 886

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            ++A  HG+M++   E +M  F NG   +L++TT+IE G+D+ +A+ +II++A+  GL+QL
Sbjct: 887  NVAFAHGQMNEHQLEKIMLDFINGEIDVLVSTTIIETGLDIPNANTMIIQDADRLGLSQL 946

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
            +Q+RGR+GR    S   L+Y     L +++  RL  ++  TE   G  IA  DL+ R  G
Sbjct: 947  YQIRGRIGRSNRTSFAFLMYKRDKMLKEDAEKRLQAIREFTELGSGIKIAMRDLEIRGAG 1006

Query: 632  EILGIKQSG 640
             ILG +Q G
Sbjct: 1007 NILGAEQHG 1015


>gi|307718846|ref|YP_003874378.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
           6192]
 gi|306532571|gb|ADN02105.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
           6192]
          Length = 1127

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 135/415 (32%), Positives = 234/415 (56%), Gaps = 17/415 (4%)

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           E LA ++  +  R++       P + E ++  +     PF  T+ Q   I+++ +DM   
Sbjct: 549 EDLAKRLLAIYSRRKLAHGFAFPPDTEWQM--EFEARFPFEETEDQLRCIEEVKRDMESP 606

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT +AL A   AV AG Q  I+AP  IL +QHYE  ++  +   + 
Sbjct: 607 RPMDRLVCGDVGFGKTEIALRAAFKAVTAGKQVAILAPTTILVEQHYETFQERLEGFPVR 666

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
             +++  +P   +R+ L+ +  G+  I+IGTH + Q  + +  L L+++DE+ RFGV+ +
Sbjct: 667 AAMLSRFVPVPEQREILKDLREGKVDILIGTHRILQKDVVFKDLGLLVIDEEQRFGVKDK 726

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            +L +   +   L +TATPIPRTL ++ L   DIS +   P  R+PI+T I+  +  +E+
Sbjct: 727 ERLKELKASVDCLTLTATPIPRTLHMSLLKIRDISLLETPPRERRPIETHILEFS--EEI 784

Query: 472 IER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           I R ++  +  G + +++  ++E   +   ++ +ER           + + HG+MS    
Sbjct: 785 IARAIRREVERGGQVFYLHNRVETLPQ--VKTFIERLVP-----EVMVEVAHGKMSSHQL 837

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E +M  F +G   +L++TT+IE GI++ +A+ III+ A+ +G+AQL+QLRGRVGR +  +
Sbjct: 838 EEIMHRFIHGGFHVLVSTTIIENGINIPNANTIIIDRADMYGIAQLYQLRGRVGRSDRTA 897

Query: 591 SCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
              L Y     +S+ +  RL V+ +  +   GF +A +DL+ R  G +LG +QSG
Sbjct: 898 YAYLFYPAQREISELAAKRLQVIADHTELGAGFKVALKDLEVRGAGNLLGREQSG 952


>gi|134297990|ref|YP_001111486.1| transcription-repair coupling factor [Desulfotomaculum reducens MI-1]
 gi|134050690|gb|ABO48661.1| transcription-repair coupling factor [Desulfotomaculum reducens MI-1]
          Length = 1169

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 139/404 (34%), Positives = 228/404 (56%), Gaps = 23/404 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  AI ++ QDM +   M R+L GDVG GKT VAL A   AV    Q  ++ P
Sbjct: 624  PYEETPDQLRAIGEVKQDMEKVRPMDRLLCGDVGYGKTEVALRAAFKAVMDNKQVAVLVP 683

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              ILAQQHY   ++   N  I +E+++       +R+ L  +A G+  I++GTH L Q+ 
Sbjct: 684  TTILAQQHYNTFRERFANYPIRIEMLSRFRTAKEQRQVLAGLATGEVDIVVGTHRLVQND 743

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I +  L L++VDE+ RFGV  + +L Q      VL ++ATPIPRTL ++ +G  D S + 
Sbjct: 744  IVFKDLGLLVVDEEQRFGVSHKERLKQIRKNVDVLTLSATPIPRTLHMSLVGVRDTSLLE 803

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R P++T ++  + +  + E +K  L+ G + Y++  ++ +         ++R   
Sbjct: 804  TPPEERFPVQTYVLEEDPV-LIREAIKRELNRGGQVYFVHNRVMD---------LDRLAG 853

Query: 510  LHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              ++    + I + HG+M + + E +M  F +G   +L+ TT++E G+D+ + + +I+++
Sbjct: 854  WLQNLVPEARIGMAHGQMKEDELEQIMIEFMDGEYDVLVCTTIVETGLDISNVNTLIVKD 913

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
            A+HFGL+QL+QLRGRVGR   ++    L+     L++ S  RLS ++  TE   G+ IA 
Sbjct: 914  ADHFGLSQLYQLRGRVGRTNRLAYAYFLFRRDKVLTEISERRLSAIREFTEFGSGYKIAM 973

Query: 623  EDLKQRKEGEILGIKQSGMPKFLIAQP--ELHDSLLEIARKDAK 664
             DL+ R  G ILG +Q G     IA+   +L+  LLE A ++A+
Sbjct: 974  RDLEIRGAGNILGAQQHGH----IAEVGFDLYCRLLEEAVQEAR 1013


>gi|310286850|ref|YP_003938108.1| ATP-dependent DNA helicase [Bifidobacterium bifidum S17]
 gi|309250786|gb|ADO52534.1| ATP-dependent DNA helicase [Bifidobacterium bifidum S17]
          Length = 898

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 146/387 (37%), Positives = 204/387 (52%), Gaps = 58/387 (14%)

Query: 347 NTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           NT+ + V ++TG M  A RR+AL   A G   II+ THA F  + Q   L LV++DEQHR
Sbjct: 490 NTRHVPVILLTGGMKLAARRRALALAASGDPCIIVATHAAFSKTFQAPNLALVVIDEQHR 549

Query: 406 FGVQQRLKL-TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           FGV+QR  L T+    PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T I+P
Sbjct: 550 FGVEQRESLRTKNDVVPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTFIVP 609

Query: 465 INR---IDEVIERLKVVLSEGKKAYWICPQI----------------------------- 492
            +    +  +   ++  +  G++AY +CP+I                             
Sbjct: 610 EDDGRMMGSMFAHIRGRIDAGERAYVVCPRIDADDESDGDDDTSGASQIGVYDDSDAYRR 669

Query: 493 ----------------EEKKESNFR----SVVE---RFNSLHEHFTSSIAIIHGRMSDID 529
                           E+   +  R    SV E   R +SL +      A + GR  D  
Sbjct: 670 ESATAAANTSASAPSQEDGDGAPSRPPLHSVAEIERRLSSLPQFRGIRFATLTGRDDDAT 729

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+ VM  F +G   +L+ATTVIEVG+DV  AS I+I +A+ +GL+QLHQLRGRVGRG   
Sbjct: 730 KQQVMADFADGATPVLVATTVIEVGVDVPQASCIVIFDADRYGLSQLHQLRGRVGRGGTD 789

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S   L+        +  RL V++ T DG  IA+ DL+ R  G++LG  QSG    L    
Sbjct: 790 SWAFLISRAEDGGPAQQRLQVIQGTLDGAQIAQADLEFRGAGDVLGDAQSGGKSGLKLLR 849

Query: 650 ELHDS-LLEIARKDAKHILTQDPDLTS 675
            + D+ ++  AR+ A  +L  DPDL+ 
Sbjct: 850 VVKDAKIIADARERAGRLLADDPDLSG 876



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 89/161 (55%), Gaps = 12/161 (7%)

Query: 184 VLPEWIEKD--LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           VLPE + +   LL +      AEAF  IH+P    DF+    A   + Y+E    Q ALL
Sbjct: 268 VLPESVRESNHLLHR------AEAFLAIHDPLSTADFKR---AIGTMRYEEAFVSQTALL 318

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
             R   +K+  +P      +  + + ++PF  T  Q   I DI  DM+++  M R+LQG+
Sbjct: 319 QSRSNVRKDAALPC-AGVALRDRFIESLPFPLTGGQREVIDDIGVDMAREYPMQRLLQGE 377

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           VGSGKT+VA+ AM  A  +G QAV++AP  +LA+QH+  I 
Sbjct: 378 VGSGKTVVAVAAMLQAAGSGHQAVLVAPTQVLAEQHHATIS 418


>gi|307822340|ref|ZP_07652572.1| transcription-repair coupling factor [Methylobacter tundripaludum
           SV96]
 gi|307736906|gb|EFO07751.1| transcription-repair coupling factor [Methylobacter tundripaludum
           SV96]
          Length = 1155

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/381 (35%), Positives = 210/381 (55%), Gaps = 21/381 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T  Q++AI+ IL+DM+  + M R++ GDVG GKT V++ A   AV+ G Q  ++ 
Sbjct: 602 FPFEETPDQQTAIEAILEDMASPHPMDRVICGDVGFGKTEVSMRAAFIAVQNGKQVAVLV 661

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQHY+  +    +  + VE+++  +    +++  + +  G+  I+IGTH L   
Sbjct: 662 PTTLLAQQHYQNFRDRFADWPVRVEVLSRFVSPKQQKEITDDLEQGKVDIVIGTHKLLSK 721

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            I+Y  L LV++DE+HRFGV Q+    +      +L +TATPIPRTL +   G  DIS I
Sbjct: 722 EIKYKALGLVVIDEEHRFGVTQKEHFKKLRNELDMLTLTATPIPRTLNMAMSGLRDISII 781

Query: 449 TEKPAGRKPIKTVIIPINRID-EVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
              P  R  IKT I     ID ++ E     +  G + +++   ++  EK      ++V 
Sbjct: 782 ASPPPNRHAIKTFI--SQWIDAQIREACLREIKRGGQVFFLHNDVKSMEKMARELEALVP 839

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I I HG+M + + E +M  F +    LL+ +T+IE GID+  A+ III
Sbjct: 840 E---------ARIEIAHGQMPERELERIMLDFYHQRFNLLLCSTIIESGIDIPSANTIII 890

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFL 619
             A+  GLAQLHQLRGRVGR    +    +  PP   LSK++  RL  ++ + D   GF+
Sbjct: 891 NRADKLGLAQLHQLRGRVGRSHHRAYAYFVV-PPLTLLSKDAIKRLEAVEASGDLGAGFM 949

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           ++  D++ R  GE+LG  QSG
Sbjct: 950 LSSHDMEIRGAGELLGDDQSG 970


>gi|225873674|ref|YP_002755133.1| transcription-repair coupling factor [Acidobacterium capsulatum ATCC
            51196]
 gi|225794589|gb|ACO34679.1| transcription-repair coupling factor [Acidobacterium capsulatum ATCC
            51196]
          Length = 1189

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 143/408 (35%), Positives = 227/408 (55%), Gaps = 17/408 (4%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  Q K   G   + + +  ++   +  ++ T  Q SAI DI +DM     M R+L 
Sbjct: 607  LLKLYAQRKAAQGHAYSADNEFQREFEDSFDYNETDDQLSAIADIKRDMESTTPMDRLLC 666

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   AV+ G Q  ++ P  +L+ QHYE  KK  +   I +E+++   
Sbjct: 667  GDVGYGKTEVAMRAAFKAVQDGKQVAVLTPTTVLSFQHYETFKKRFRQFPIHIEMLSRFR 726

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                ++  +ER+  G+  I+IGTH L    ++++ + L+IVDE+ RFGV+ + +L Q   
Sbjct: 727  TAKEQKLIVERVEAGEIDILIGTHRLLSKDLKFHDIGLLIVDEEQRFGVRHKERLKQLRA 786

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER--LKV 477
               VL M+ATPIPRTL ++ +G  D+S I   P  R  I+T++    + DE + R  ++V
Sbjct: 787  QLDVLTMSATPIPRTLHMSLVGLRDMSVIETPPKDRMAIQTIVA---KFDEKLVRSAVEV 843

Query: 478  VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
             L  G + Y++  ++E   E     +  +   L  H  + I + HG+M + + E VM +F
Sbjct: 844  ELERGGQIYFVHNRVETIYE-----IAAKIQELVPH--ARITVGHGQMGEAELEKVMLAF 896

Query: 538  KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             N    +L+AT++IE G+D+  A+ I+I  A+  GL++L+QLRGRVGR    +   L+  
Sbjct: 897  MNHEYDVLVATSIIENGLDIPLANTILINRADRHGLSELYQLRGRVGRSNRRAYAYLMIP 956

Query: 598  P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            P   L++ +  RL+ LK   D   GF IA  DL+ R  G +LG +QSG
Sbjct: 957  PEQELTEIARRRLAALKEFSDLGAGFKIAALDLELRGAGNMLGGEQSG 1004


>gi|239629010|ref|ZP_04672041.1| transcription-repair coupling factor [Clostridiales bacterium
            1_7_47_FAA]
 gi|239519156|gb|EEQ59022.1| transcription-repair coupling factor [Clostridiales bacterium
            1_7_47FAA]
          Length = 1186

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 206/376 (54%), Gaps = 13/376 (3%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  AI  +  DM  +  M R++ GDVG GKT VAL A   AV+   Q V + P
Sbjct: 634  PYDETDDQMDAIDAVKTDMESRRIMDRLICGDVGYGKTEVALRAAFKAVQDSKQVVYLVP 693

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              ILAQQHY    +  ++  + V++++     A +++ LE +  G   I+IGTH +    
Sbjct: 694  TTILAQQHYNTFVQRMKDFPVRVDMLSRFCTPARQKRTLEDLRKGMVDIVIGTHRVLSKD 753

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +Q+  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++  G  D+S + 
Sbjct: 754  MQFKDLGLLIIDEEQRFGVAHKEKIKQLKENVDVLTLTATPIPRTLHMSLAGIRDMSVLE 813

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            E P  R PI+T ++  N  + V E +   L+   + Y++  ++     ++   V  R  +
Sbjct: 814  EPPVDRTPIQTYVMEYNE-EMVREAINRELARNGQVYYVYNRV-----TDIDEVANRIQA 867

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            L      + A  HG+M + + E +M  F NG   +L++TT+IE G+D+ +A+ +II +A+
Sbjct: 868  LVPEAVVTFA--HGQMREHELERIMADFINGEIDVLVSTTIIETGLDIPNANTMIIHDAD 925

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEED 624
              GL+QL+QLRGRVGR    S   L+Y     L + +  RL  ++  TE   G  IA  D
Sbjct: 926  RMGLSQLYQLRGRVGRSNRTSYAFLMYRRDKLLKEEAEKRLQAIREFTELGSGIKIAMRD 985

Query: 625  LKQRKEGEILGIKQSG 640
            L+ R  G +LG +Q G
Sbjct: 986  LEIRGAGNVLGAEQHG 1001


>gi|322807864|emb|CBZ05439.1| transcription-repair coupling factor [Clostridium botulinum H04402
           065]
          Length = 1168

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 145/437 (33%), Positives = 232/437 (53%), Gaps = 35/437 (8%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EWT +  + + + +E+    + L  +R   K   G   + +    ++     P+  T  Q
Sbjct: 573 EWTKTKNKVKKSIEEIAEDLVKLYAIRASLK---GYKYSDDTVWQKQFEEEFPYEETPDQ 629

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI+DI +DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQH
Sbjct: 630 LLAIEDIKKDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQH 689

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y   K+   +  I V++I+     + ++  ++ I  G   I+IGTH + Q  I++  L L
Sbjct: 690 YNNFKQRFSDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGL 749

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  DIS I   P  R P
Sbjct: 750 LIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYP 809

Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           ++T ++  N  D++I + +   +S G + Y++  ++E               S+HE  + 
Sbjct: 810 VQTYVVEYN--DQLIRDSILREISRGGQIYFVYNRVE---------------SIHEMASY 852

Query: 516 -------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                    + I HG+M + + E+V+  F      +LIATT+IE G+D+ + + +II +A
Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623
           +  GL+QL+QLRGRVGR   ++ C L Y     L++ +  RL  +K+ TE   GF IA +
Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G ++G  Q G
Sbjct: 973 DLEIRGAGNMMGSAQHG 989


>gi|110679958|ref|YP_682965.1| transcription-repair coupling factor [Roseobacter denitrificans OCh
           114]
 gi|109456074|gb|ABG32279.1| transcription-repair coupling factor [Roseobacter denitrificans OCh
           114]
          Length = 1154

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 142/399 (35%), Positives = 224/399 (56%), Gaps = 23/399 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q  AI D++ D++  N M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 594 PYTETDDQLRAIADVIDDLTSGNPMDRLVCGDVGFGKTEVAMRAAFVAAMSGVQVALIAP 653

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+   +  +   I V  ++  +P     +  E ++ G   I+IGTHAL    
Sbjct: 654 TTLLARQHYKSFAERFRGFPINVRQLSRFVPTKEANETREGLSRGTVDIVIGTHALLAQG 713

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+  FGV  + +L Q  T  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 714 IRFQNLGLLIIDEEQHFGVTHKERLKQLRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 773

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  E      +E 
Sbjct: 774 TPPVDRLAIRTY---VSEFDTVTLR-EALLREHYRGGQSFYVVPRISDLPE------IEA 823

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L E     +  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +I+
Sbjct: 824 F--LTEQLPELTYVVAHGQMAAGELDDRMNAFYDGKFDILLATTIVESGLDIPTANTMIV 881

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
             A+ FGLAQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +
Sbjct: 882 HRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRARLTATAEKRLRVLSSLDTLGAGFTL 941

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           A +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 942 ASQDLDIRGAGNLLGEEQSGQMRDV--GFELYQSMLEEA 978


>gi|289450268|ref|YP_003474746.1| transcription-repair coupling factor [Clostridiales genomosp. BVAB3
            str. UPII9-5]
 gi|289184815|gb|ADC91240.1| transcription-repair coupling factor [Clostridiales genomosp. BVAB3
            str. UPII9-5]
          Length = 1241

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 206/379 (54%), Gaps = 15/379 (3%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + PF  T  Q   IK++  DM     M R+L GDVG GKT VA  A+  AV  G QA ++
Sbjct: 678  SFPFEETDDQLRCIKEVSADMESDKVMDRLLCGDVGFGKTEVAFRALFKAVMGGKQAALL 737

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            AP  +LAQQHYE          I V +++     A + K L  +A G   ++IGTH L  
Sbjct: 738  APTTVLAQQHYENFMNRINGFPIRVGLLSRFANDAMQHKTLSGLATGNIDVVIGTHRLLS 797

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              +++ KL L+I+DE+ RFGV+ + KL        VL ++ATPIPRTL +   G  DIS 
Sbjct: 798  KDVKFKKLGLLIIDEEQRFGVEHKEKLKVNYQGVDVLTLSATPIPRTLHMALSGIRDISV 857

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
            I E P  R+ + T ++  +    VI+ +    S   + +++         +N   +  + 
Sbjct: 858  IEEAPLDRRSVLTYVMEYDPA-IVIDAINREFSRHGQVFYLY--------NNTAGIDAKV 908

Query: 508  NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            N L E    + IA  HG+MS+   E V++ F  G   +L+ TT+IE GID+ + + +I+E
Sbjct: 909  NELQEALPGARIAAGHGKMSEKQLEQVINDFYAGETDILVCTTIIESGIDMPNVNTLIVE 968

Query: 567  NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIA 621
            NA+  GLAQL+QLRGRVGR    +   + Y     L++ +  RL+ +++ TE   GF IA
Sbjct: 969  NADRLGLAQLYQLRGRVGRSGRQAYAYITYRRDKVLTEVAEKRLTAIRDFTELGSGFKIA 1028

Query: 622  EEDLKQRKEGEILGIKQSG 640
             +DL+ R  G ILG +Q G
Sbjct: 1029 MKDLEVRGAGNILGGEQHG 1047


>gi|218231044|ref|YP_002364903.1| transcription-repair coupling factor [Bacillus cereus B4264]
 gi|218159001|gb|ACK58993.1| transcription-repair coupling factor [Bacillus cereus B4264]
          Length = 1176

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   I E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALIREAIER---ELARGGQVYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|110799729|ref|YP_697172.1| transcription-repair coupling factor [Clostridium perfringens ATCC
           13124]
 gi|110674376|gb|ABG83363.1| transcription-repair coupling factor [Clostridium perfringens ATCC
           13124]
          Length = 1162

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 230/431 (53%), Gaps = 23/431 (5%)

Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  + A+ R + +++    + L   R   K   G   + + +  ++     P+  T  Q
Sbjct: 567 EWQKAKAKVRKSINDIAGDLVKLYAERSTVK---GYKFSKDTQWQKQFEDEFPYEETPDQ 623

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            SAI+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QH
Sbjct: 624 LSAIEDIKSDMETNKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQH 683

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+ +KK      I +++I+    +  + + L+ +  G   I+IGTH L    IQ+  L L
Sbjct: 684 YKNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGL 743

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R P
Sbjct: 744 LIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYP 803

Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           I+T ++  N  D++I    L+ +  +G + Y++  ++E        S+ E  N + E   
Sbjct: 804 IQTYVVEQN--DQLIRDAILREINRDG-QVYFVHNRVE--------SIQEVANYIQELVP 852

Query: 516 SSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              A +IHG+M++   E+ M  F      +L+ T++IE GID+ + + +I+ +A+  GL+
Sbjct: 853 ECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLS 912

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+QLRGRVGR  +++    LY     L++ +  RL  LK+ TE   GF IA  DL+ R 
Sbjct: 913 QLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 972

Query: 630 EGEILGIKQSG 640
            G ++G  Q G
Sbjct: 973 AGNMMGSAQHG 983


>gi|229153832|ref|ZP_04281963.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342]
 gi|228629636|gb|EEK86332.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342]
          Length = 1176

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R PI+T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPIQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|168213408|ref|ZP_02639033.1| transcription-repair coupling factor [Clostridium perfringens CPE
           str. F4969]
 gi|170715029|gb|EDT27211.1| transcription-repair coupling factor [Clostridium perfringens CPE
           str. F4969]
          Length = 1168

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 230/431 (53%), Gaps = 23/431 (5%)

Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  + A+ R + +++    + L   R   K   G   + + +  ++     P+  T  Q
Sbjct: 573 EWQKAKAKVRKSINDIAGDLVKLYAERSTVK---GYKFSKDTQWQKQFEDEFPYEETPDQ 629

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            SAI+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QH
Sbjct: 630 LSAIEDIKSDMETNKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQH 689

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+ +KK      I +++I+    +  + + L+ +  G   I+IGTH L    IQ+  L L
Sbjct: 690 YKNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGL 749

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R P
Sbjct: 750 LIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYP 809

Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           I+T ++  N  D++I    L+ +  +G + Y++  ++E        S+ E  N + E   
Sbjct: 810 IQTYVVEQN--DQLIRDAILREINRDG-QVYFVHNRVE--------SIQEVANYIQELVP 858

Query: 516 SSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              A +IHG+M++   E+ M  F      +L+ T++IE GID+ + + +I+ +A+  GL+
Sbjct: 859 ECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLS 918

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+QLRGRVGR  +++    LY     L++ +  RL  LK+ TE   GF IA  DL+ R 
Sbjct: 919 QLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 978

Query: 630 EGEILGIKQSG 640
            G ++G  Q G
Sbjct: 979 AGNMMGSAQHG 989


>gi|300087739|ref|YP_003758261.1| transcription-repair coupling factor [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527472|gb|ADJ25940.1| transcription-repair coupling factor [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 1148

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 146/389 (37%), Positives = 211/389 (54%), Gaps = 14/389 (3%)

Query: 258 EGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           E  I Q+ L +  P++ T  Q  AI +I +DM Q   M R++ GDVG GKT VAL A   
Sbjct: 588 EDTIWQRELEDSFPYTETSDQLQAIDEIKKDMEQPQPMDRLVLGDVGYGKTEVALRAAFK 647

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AV    Q  I+ P  +LAQQHY           I ++ ++       +   +ER+A G  
Sbjct: 648 AVMDNRQVAILVPTTVLAQQHYSTFSHRLAAFPITIDSLSRFRTDTEQSSIIERLASGSI 707

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            IIIGTH L Q  +++  L LVI+DE+ RFGV  +    +      +L ++ATPIPRTL 
Sbjct: 708 DIIIGTHRLLQGDVKFKHLGLVIIDEEQRFGVLHKDYFKKLRKEIDILTLSATPIPRTLE 767

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           L+  G  DIS I   P  R P+KTV   ++  DE + +   ++SE ++   I   +  + 
Sbjct: 768 LSLSGIKDISIIDTPPQERHPVKTV---VSSFDEYLIK-DAIISEMERNGQIF-FVHNRI 822

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              FR   +  N + E   +SI + HG+MS+ + E VM SF +G   +L+ TT+IE G+D
Sbjct: 823 VDIFRIANQLRNIVPE---ASIQVAHGQMSERELEQVMSSFVDGDIDVLVCTTIIESGVD 879

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT 614
           + +A+ III +A+  GL QL+QLRGRVGR  + +   LLY  +     NS  RL  +   
Sbjct: 880 IPNANTIIINDADKLGLTQLYQLRGRVGRSTQSAFAYLLYDKNREFKGNSAQRLQTIYEA 939

Query: 615 E---DGFLIAEEDLKQRKEGEILGIKQSG 640
                G+ IA +DL+ R  G +LG KQSG
Sbjct: 940 ASLGSGYTIALKDLEIRGAGTLLGSKQSG 968


>gi|154684574|ref|YP_001419735.1| hypothetical protein RBAM_000640 [Bacillus amyloliquefaciens FZB42]
 gi|154350425|gb|ABS72504.1| Mfd [Bacillus amyloliquefaciens FZB42]
          Length = 1177

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/380 (35%), Positives = 213/380 (56%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I++I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P
Sbjct: 621 PYQETEDQLRSIQEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE I +  Q+  I + +++    +    + ++ + +G   I+IGTH L    
Sbjct: 681 TTILAQQHYETIMERFQDYPINIGLLSRFRTRKESNETIKGLKNGTVDIVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P  R P++T ++  N   + E IER    L+ G + Y++  +++  E+K      +V 
Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVDDIERKADEISMLVP 857

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +A  HG+M++ + ESVM +F  G   +L++TT+IE G+D+ + + +I+
Sbjct: 858 ---------DAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIV 908

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            + +  GL+QL+QLRGRVGR   ++     Y     L++ +  RL  +K  TE   GF I
Sbjct: 909 FDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKI 968

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +Q G
Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988


>gi|310779687|ref|YP_003968020.1| transcription-repair coupling factor [Ilyobacter polytropus DSM
           2926]
 gi|309749010|gb|ADO83672.1| transcription-repair coupling factor [Ilyobacter polytropus DSM
           2926]
          Length = 991

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 205/378 (54%), Gaps = 16/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ TK Q  +I+++ QDM     M RI+ GDVG GKT VA+ A   A+  G Q V+MAP
Sbjct: 463 PYNETKDQMRSIEEVKQDMESHTVMDRIVCGDVGYGKTEVAMRAAFKALMDGKQVVVMAP 522

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA QHY+      +N  I + +++       +   ++++  G   ++IGTH L    
Sbjct: 523 TTVLASQHYQRFLDRFKNYPIEISLLSRLKSDKDQNDIIKKLKAGTVDLVIGTHRLLSKD 582

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L LVI+DE+ +FGV+ + KL        +L +TATPIPRTL L  LG  DIS I 
Sbjct: 583 VGFKNLGLVIIDEEQKFGVKAKEKLKHFRANVDMLTLTATPIPRTLNLAFLGIRDISIIQ 642

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T  I   R  I E +  +K V  EG+  Y            N +  +E  
Sbjct: 643 TPPPNRLPVETNFIEKTRENIKEAV--MKEVAREGQIFYLFNSV------KNMKRKLEEI 694

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            S+   +  +   IHG+M+  +    +  F++G   LL++TT+IE GID+ +A+ IIIEN
Sbjct: 695 ESIIPKYVKT-TYIHGQMTPKEIRDRIKDFEDGEVDLLLSTTIIENGIDIENANTIIIEN 753

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT---EDGFLIAE 622
            +  GL+Q++QLRGRVGRG   + C L+      ++K    R   L+N      GF ++ 
Sbjct: 754 IDKLGLSQVYQLRGRVGRGSRKAYCYLVVDKDKKMTKKGEQRKDSLENIGVFGAGFQLSM 813

Query: 623 EDLKQRKEGEILGIKQSG 640
           ED++ R  GEILG KQ G
Sbjct: 814 EDMRIRGAGEILGEKQHG 831


>gi|328948120|ref|YP_004365457.1| transcription-repair coupling factor [Treponema succinifaciens DSM
            2489]
 gi|328448444|gb|AEB14160.1| transcription-repair coupling factor [Treponema succinifaciens DSM
            2489]
          Length = 1246

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 143/415 (34%), Positives = 234/415 (56%), Gaps = 17/415 (4%)

Query: 232  ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            E +A ++  L  ++Q  +    P + E   A +     P+  T  Q SA ++I  DM + 
Sbjct: 668  EEIAEKLIDLYSKRQASRGFPFPKDTEWNAAFEAA--FPYEDTPDQFSATQEIKADMEKP 725

Query: 292  NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
              M R++ GDVG GKT +A+ A   AV  G Q   +AP  ILA+QH+E  ++  +N  + 
Sbjct: 726  VPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQVAFLAPTTILAEQHFENSQERFKNFPVT 785

Query: 352  VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
            +  ++  +    ++K + +IA G+  IIIGTH + Q  + +  L L+I+DE+ RFGV+ +
Sbjct: 786  IAQLSRFVSPTEQKKIISKIASGEIDIIIGTHRILQKDVIFKNLGLMIIDEEQRFGVKDK 845

Query: 412  LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             KL    T    L M+ATPIPRTL ++ L   D+S +T  P  R+PI+T I   N  DE 
Sbjct: 846  EKLKTLKTNIDCLAMSATPIPRTLHMSLLKIRDMSLLTTPPQNRQPIETAIEEYN--DEK 903

Query: 472  IER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            + R ++  +  G + +++  ++E  +E+  +  +E  N + E     +   HG+M+  + 
Sbjct: 904  VARAIRNEVQRGGQVFYLHNRVETLEETRLK--LE--NLVPEML---VETAHGKMTSEEL 956

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            + +   FK G   +L+ATT+IE GID+ + + III+ A+ +G++QL+QLRGRVGR +  +
Sbjct: 957  DDIFRRFKMGGFHILVATTIIENGIDIPNVNTIIIDRADMYGVSQLYQLRGRVGRSDRKA 1016

Query: 591  SCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
               L Y  +  LS+ +  RL V+ + TE   GF IA +D++ R  G +LG  QSG
Sbjct: 1017 YAYLFYPQNKALSEVAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLLGKDQSG 1071


>gi|257470409|ref|ZP_05634500.1| transcription-repair coupling factor [Fusobacterium ulcerans ATCC
           49185]
 gi|317064617|ref|ZP_07929102.1| transcription-repair coupling factor [Fusobacterium ulcerans ATCC
           49185]
 gi|313690293|gb|EFS27128.1| transcription-repair coupling factor [Fusobacterium ulcerans ATCC
           49185]
          Length = 983

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 139/380 (36%), Positives = 221/380 (58%), Gaps = 18/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T SQ  AI+D+ +DM     M R++ GDVG GKT +AL A   A   G Q V+M
Sbjct: 452 SFPYKETASQLKAIEDVKRDMESDRIMDRVVCGDVGYGKTEIALRAAFKASIDGKQVVVM 511

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHYE   +  +N  + +EI++    +  +++ L++I+ G   I+IGTH +  
Sbjct: 512 VPTTVLAQQHYERFTERFKNYPVSIEILSRLKSEKEQKEVLKKISAGTIDIVIGTHRILS 571

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L LV++DE+ +FGV+ + +L +      ++ +TATPIPRTL L+ LG  D+S 
Sbjct: 572 SDVKFKDLGLVVIDEEQKFGVKAKEQLKKLKNKIDMITLTATPIPRTLNLSLLGIRDLSV 631

Query: 448 ITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSV 503
           I   P GRKPI+T+ I  +  ++ E+I  +  +  EG + ++I   ++  EKK    R +
Sbjct: 632 IDTPPEGRKPIETMFIDKDDKKLKEII--MSEIAREG-QVFYIFNSVKNIEKKTHELRKL 688

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +  +  L          IHG+M   + ++ +  F+NG   +LI+TT+IE GID+ +A+ +
Sbjct: 689 LPNYLKLD--------YIHGQMLPKEIKNKIKDFENGDIDMLISTTIIENGIDIENANTM 740

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLI 620
           II+  E  GL+Q++QLRGR+GRG     C LL     +K +  R   +KN  D   GF +
Sbjct: 741 IIDGVEKLGLSQIYQLRGRIGRGRRKGYCYLLTKEHQTKKAKEREESIKNLGDSGGGFQL 800

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           + ED++ R  GEILG KQ G
Sbjct: 801 SLEDMRIRGAGEILGDKQHG 820


>gi|148381479|ref|YP_001256020.1| transcription-repair coupling factor [Clostridium botulinum A str.
           ATCC 3502]
 gi|153934098|ref|YP_001385854.1| transcription-repair coupling factor [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937373|ref|YP_001389261.1| transcription-repair coupling factor [Clostridium botulinum A str.
           Hall]
 gi|148290963|emb|CAL85099.1| transcription-repair coupling factor [Clostridium botulinum A str.
           ATCC 3502]
 gi|152930142|gb|ABS35642.1| transcription-repair coupling factor [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933287|gb|ABS38786.1| transcription-repair coupling factor [Clostridium botulinum A str.
           Hall]
          Length = 1168

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 145/437 (33%), Positives = 232/437 (53%), Gaps = 35/437 (8%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EWT +  + + + +E+    + L  +R   K   G   + +    ++     P+  T  Q
Sbjct: 573 EWTKTKNKVKKSIEEIAEDLVKLYAIRATLK---GYKYSDDTVWQKQFEEEFPYEETPDQ 629

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI+DI +DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQH
Sbjct: 630 LLAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQH 689

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y   K+   +  I V++I+     + ++  ++ I  G   I+IGTH + Q  I++  L L
Sbjct: 690 YNNFKQRFSDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGL 749

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  DIS I   P  R P
Sbjct: 750 LIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYP 809

Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           ++T ++  N  D++I + +   +S G + Y++  ++E               S+HE  + 
Sbjct: 810 VQTYVVEYN--DQLIRDSILREISRGGQIYFVYNRVE---------------SIHEMASY 852

Query: 516 -------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                    + I HG+M + + E+V+  F      +LIATT+IE G+D+ + + +II +A
Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623
           +  GL+QL+QLRGRVGR   ++ C L Y     L++ +  RL  +K+ TE   GF IA +
Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G ++G  Q G
Sbjct: 973 DLEIRGAGNMMGSAQHG 989


>gi|153952805|ref|YP_001393570.1| hypothetical protein CKL_0152 [Clostridium kluyveri DSM 555]
 gi|146345686|gb|EDK32222.1| Mfd [Clostridium kluyveri DSM 555]
          Length = 1173

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 146/415 (35%), Positives = 231/415 (55%), Gaps = 21/415 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q S I+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P
Sbjct: 625  PYEETPDQLSTIQDIKMDMESDKVMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVP 684

Query: 330  IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              ILAQQHY  FI++++ +  + +++I+     A ++  ++ +  G   ++IGTH + Q 
Sbjct: 685  TTILAQQHYNNFIQRFS-DFPVKIDMISRFKTAAQQKATIKAVKIGDVDVLIGTHRILQK 743

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +Q+  L L+I+DE+ RFGV  + K+ Q      VL ++ATPIPRTL ++ +G  DIS I
Sbjct: 744  DVQFKDLGLLIIDEEQRFGVSHKEKIKQIRKNVDVLTLSATPIPRTLHMSLVGVRDISVI 803

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVER 506
               P  R PI+T ++  N  D++I R  V+  LS G + Y++  ++E  KE    S + +
Sbjct: 804  ETPPDERYPIQTYVVEYN--DQLI-RDAVLRELSRGGQVYFVYNRVENIKE--MASYIAK 858

Query: 507  FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                       +A+ HG+M + + E ++  F      +L++TT+IE G+D+ + + ++I 
Sbjct: 859  LIP-----EGKVAVAHGQMQERELEGIIMDFMQNKYDILVSTTIIETGMDIQNVNTMVIY 913

Query: 567  NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIA 621
            +A+  GL+QL+QLRGRVGR   I+ C L Y     L + +  RL V+K  TE   GF IA
Sbjct: 914  DADKMGLSQLYQLRGRVGRTNRIAYCYLSYRKDKVLKEVAEKRLKVIKEFTELGSGFKIA 973

Query: 622  EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
             +DL+ R  G ++G  Q G         +L+  +LE + K  K  + ++P  T+V
Sbjct: 974  LKDLEIRGAGNMMGSSQHG--HMAAVGYDLYCRMLEDSIKLIKGEIDKEPVETTV 1026


>gi|332981377|ref|YP_004462818.1| transcription-repair coupling factor [Mahella australiensis 50-1
           BON]
 gi|332699055|gb|AEE95996.1| transcription-repair coupling factor [Mahella australiensis 50-1
           BON]
          Length = 1159

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 141/381 (37%), Positives = 207/381 (54%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  AI++I  DM     M R+L GDVG GKT VAL A   AV  G Q  ++
Sbjct: 608 SFPYQETPDQLQAIEEIKADMESDKPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVL 667

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY           I V++I+       ++  ++ +  G   IIIGTHAL  
Sbjct: 668 VPTTVLAQQHYNTFTNRLAGFPIKVDVISRFRSVQEQKDIVKGLKSGDIDIIIGTHALLS 727

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
            +++++ L L+IVDE+ RFGV  +  + +      VL +TATPIPRTL ++  G  DIS 
Sbjct: 728 SNVKFHDLGLLIVDEEQRFGVSHKEAIKRFKNNVDVLTLTATPIPRTLHMSLSGIRDISI 787

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++     DE I R  ++  L  G + Y++  +I         S+  
Sbjct: 788 IETPPEDRYPVQTYVV---EYDENIIRDAILKELGRGGQVYFVYNRIN--------SIDV 836

Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               LHE    + IA+ HGRM D   E VM  F +G   +L+ TT+IE G+D+ + + +I
Sbjct: 837 MAIHLHELVPEARIAVAHGRMGDDKLERVMMDFMDGYYDVLLCTTIIETGLDIPNVNTLI 896

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL-SVLKNTE--DGFL 619
           + +A+HFGLAQL+QLRGRVGR   ++     Y     L++ +  RL ++ + TE   GF 
Sbjct: 897 VYDADHFGLAQLYQLRGRVGRSNRLAYAYFTYKKDRVLTEEAEKRLHAITEFTEFGSGFK 956

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           IA  DL+ R  G +LG +Q G
Sbjct: 957 IALRDLEIRGAGNLLGAEQHG 977


>gi|18311466|ref|NP_563400.1| transcription-repair coupling factor [Clostridium perfringens str.
           13]
 gi|18146150|dbj|BAB82190.1| transcription-repair coupling factor [Clostridium perfringens str.
           13]
          Length = 1162

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 230/431 (53%), Gaps = 23/431 (5%)

Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  + A+ R + +++    + L   R   K   G   + + +  ++     P+  T  Q
Sbjct: 567 EWQKAKAKVRKSINDIAGDLVKLYAERSTVK---GYKFSKDTQWQKQFEDEFPYEETPDQ 623

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            SAI+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QH
Sbjct: 624 LSAIEDIKSDMEANKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQH 683

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+ +KK      I +++I+    +  + + L+ +  G   I+IGTH L    IQ+  L L
Sbjct: 684 YKNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGL 743

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R P
Sbjct: 744 LIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYP 803

Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           I+T ++  N  D++I    L+ +  +G + Y++  ++E        S+ E  N + E   
Sbjct: 804 IQTYVVEQN--DQLIRDAILREINRDG-QVYFVHNRVE--------SIQEIANYIQELVP 852

Query: 516 SSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              A +IHG+M++   E+ M  F      +L+ T++IE GID+ + + +I+ +A+  GL+
Sbjct: 853 ECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLS 912

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+QLRGRVGR  +++    LY     L++ +  RL  LK+ TE   GF IA  DL+ R 
Sbjct: 913 QLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 972

Query: 630 EGEILGIKQSG 640
            G ++G  Q G
Sbjct: 973 AGNMMGSAQHG 983


>gi|182420058|ref|ZP_02951292.1| transcription-repair coupling factor [Clostridium butyricum 5521]
 gi|237669507|ref|ZP_04529487.1| transcription-repair coupling factor [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182376095|gb|EDT73682.1| transcription-repair coupling factor [Clostridium butyricum 5521]
 gi|237654951|gb|EEP52511.1| transcription-repair coupling factor [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 1166

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 146/431 (33%), Positives = 236/431 (54%), Gaps = 23/431 (5%)

Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  + A+ R + +E+    + L  MR   K   G   + + +  ++     P+  T  Q
Sbjct: 574 EWQKAKAKVRKSINEIAEDLVKLYAMRTTVK---GHKFSKDTQWQKQFEDEFPYDETPDQ 630

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            +++++I  DM     M R+L GDVG GKT VAL A   AV  G Q  ++ P  ILA+QH
Sbjct: 631 LTSLEEIKADMESDKPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVALLVPTTILAEQH 690

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+ +K    +  I +++++       +++ L+++  G   I++GTH L    IQ+  L L
Sbjct: 691 YKNMKNRFSDFPIKIDMVSRFRSAKEQKETLQKVKEGNIDILVGTHRLVSKDIQFKDLGL 750

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV+Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R P
Sbjct: 751 LIVDEEQRFGVKQKEKIKNIKKNVDVLTLSATPIPRTLHMSLSGVRDISVIETPPEERYP 810

Query: 458 IKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           ++T ++  N  D++I     +L E   G + Y++  ++E     N  ++ +   +L    
Sbjct: 811 VQTYVVEQN--DQLIR--DAILREIGRGGQVYFVYNRVE-----NIDAIAKYVQNLVPE- 860

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            S + +IHG+M++   E  M +F + T  +L+ TT+IE G+D+ + + II+ +A+  GL+
Sbjct: 861 -SKVGVIHGQMAERQLEQEMFNFMDQTYNVLVCTTIIETGMDIQNVNTIIVYDADKMGLS 919

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+QLRGRVGR   I+   LLY     L++ +  RL  LK+ TE   GF IA  DL+ R 
Sbjct: 920 QLYQLRGRVGRSNRIAYAYLLYTKDKILTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 979

Query: 630 EGEILGIKQSG 640
            G ++G  Q G
Sbjct: 980 AGNMMGSSQHG 990


>gi|88705083|ref|ZP_01102795.1| transcription-repair coupling factor [Congregibacter litoralis
           KT71]
 gi|88700778|gb|EAQ97885.1| transcription-repair coupling factor [Congregibacter litoralis
           KT71]
          Length = 1164

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 142/430 (33%), Positives = 221/430 (51%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R+       +A Q+  +  R++ ++  G+      +   K     PF  T  Q 
Sbjct: 562 QWEKAQRKAREKANDVAAQLLEVYARREARE--GVQFTSPEEDYAKFAAGFPFEETPDQA 619

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI  +  DM     M R++ GDVG GKT VA+ A   A     Q  ++ P  +LAQQHY
Sbjct: 620 AAIDAVEADMCGTGVMDRLVCGDVGFGKTEVAMRAAFIATANARQVAVLVPTTLLAQQHY 679

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              +    N  + +E+I+     +  R+  +R+  G   I+IGTH L Q  I++  L L+
Sbjct: 680 NSFRDRFANWPVKIEVISRFRAASDTREIAKRLESGDVDILIGTHKLIQSDIKFADLGLL 739

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+Q+  +        +L +TATPIPRTL +   G  D+S I   PA R  I
Sbjct: 740 IIDEEHRFGVRQKDSIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSI 799

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           KT +   +   I E + R  +    G + +++         +  R++ +    L E    
Sbjct: 800 KTFVREHDHGLIKEAVLRESL---RGGQVFYV--------HNEVRTIEQCAQGLKELLPD 848

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            S+A+ HG+M +   E VM  F +    +L+ +T+IE GID+ +A+ III+ A+ FGLAQ
Sbjct: 849 LSVAVAHGQMHETQLERVMSDFYHQRHHILVCSTIIETGIDIPNANTIIIDRADKFGLAQ 908

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL  P   ++ ++  RL  ++   D   G+ +A  DL+ R  
Sbjct: 909 LHQLRGRVGRSHHQAYAYLLCPPASAMTTDASKRLEAIEAAGDLGAGYQLATHDLEIRGA 968

Query: 631 GEILGIKQSG 640
           GE+LG +QSG
Sbjct: 969 GELLGDEQSG 978


>gi|331090628|ref|ZP_08339479.1| hypothetical protein HMPREF9477_00122 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401068|gb|EGG80663.1| hypothetical protein HMPREF9477_00122 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 1112

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 210/367 (57%), Gaps = 15/367 (4%)

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+   +DM     M R++ GDVG GKT VA+ A   AV+   Q V + P  ILAQQHY 
Sbjct: 572 AIEATKRDMESNKIMDRLICGDVGYGKTEVAIRAAFKAVQENKQVVYLVPTTILAQQHYN 631

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +   + V+++      A ++K +E    G   II+GTH +  D +++  L L+I
Sbjct: 632 TFVQRMKEFPVRVDLMCRFRTPAQQKKTIEDTKKGLVDIIVGTHRVLSDDLKFKDLGLLI 691

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGVQ + K+ +      VL +TATPIPRTL ++ +G  D+S + E P  R PI+
Sbjct: 692 IDEEQRFGVQHKEKIKKLKENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRIPIQ 751

Query: 460 TVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           T ++  N  DE++ E ++  LS   + Y++  ++++ +E     + +R  SL     +++
Sbjct: 752 TYVMEYN--DEMVREAIQRELSRQGQVYYVYNKVKDIEE-----ITDRIQSLVPE--AAV 802

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              HG+MS+   E +M  F NG   +L++TT+IE G+D+ +A+ +II  A+  GL+QL+Q
Sbjct: 803 TYAHGQMSEHQLEKIMYDFINGEIDVLVSTTIIETGLDISNANTMIIHEADKLGLSQLYQ 862

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGR   ++   +LY     L + +  RLS ++   D   GF IA  DL+ R  G +
Sbjct: 863 LRGRVGRSNRMAYAFMLYKRDKLLKEVAEKRLSAIREFTDLGSGFKIAMRDLEIRGAGNL 922

Query: 634 LGIKQSG 640
           LG +Q G
Sbjct: 923 LGAEQHG 929


>gi|169343325|ref|ZP_02864335.1| transcription-repair coupling factor [Clostridium perfringens C
           str. JGS1495]
 gi|169298623|gb|EDS80704.1| transcription-repair coupling factor [Clostridium perfringens C
           str. JGS1495]
          Length = 1168

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 230/431 (53%), Gaps = 23/431 (5%)

Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  + A+ R + +++    + L   R   K   G   + + +  ++     P+  T  Q
Sbjct: 573 EWQKAKAKVRKSINDIAGDLVKLYAERSTVK---GYKFSKDTQWQKQFEDEFPYEETPDQ 629

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            SAI+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QH
Sbjct: 630 LSAIEDIKSDMETNKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQH 689

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+ +KK      I +++I+    +  + + L+ +  G   I+IGTH L    IQ+  L L
Sbjct: 690 YKNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGL 749

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R P
Sbjct: 750 LIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYP 809

Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           I+T ++  N  D++I    L+ +  +G + Y++  ++E        S+ E  N + E   
Sbjct: 810 IQTYVVEQN--DQLIRDAILREINRDG-QVYFVHNRVE--------SIQEVANYIQELVP 858

Query: 516 SSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              A +IHG+M++   E+ M  F      +L+ T++IE GID+ + + +I+ +A+  GL+
Sbjct: 859 ECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLS 918

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+QLRGRVGR  +++    LY     L++ +  RL  LK+ TE   GF IA  DL+ R 
Sbjct: 919 QLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 978

Query: 630 EGEILGIKQSG 640
            G ++G  Q G
Sbjct: 979 AGNMMGSAQHG 989


>gi|331005187|ref|ZP_08328584.1| Transcription-repair coupling factor [gamma proteobacterium
           IMCC1989]
 gi|330421011|gb|EGG95280.1| Transcription-repair coupling factor [gamma proteobacterium
           IMCC1989]
          Length = 1163

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/390 (35%), Positives = 218/390 (55%), Gaps = 27/390 (6%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + PF  T  QE+AI  +  DM     M R++ GDVG GKT VA+ A   A +AG 
Sbjct: 609 QQFSSSFPFEETPDQEAAIHSVRNDMLSDKPMDRLVCGDVGFGKTEVAMRAAFIATQAGK 668

Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALE-RIAHGQAHIII 380
           Q  ++ P  +LAQQH+E F+ ++  +  + V +I+     A   KA+E +++ G+  I+I
Sbjct: 669 QVAVLVPTTLLAQQHHENFVDRFV-DWPVNVAVIS-RFQTAKETKAIEAKVSSGEIDILI 726

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTH +     Q+ +L L+I+DE+HRFGV+Q+  +    +   +L +TATPIPRTL +   
Sbjct: 727 GTHKILTTGFQFKELGLLIIDEEHRFGVRQKEAIKAFRSEVDILTLTATPIPRTLNMAMH 786

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EK 495
              D+S I   PA R  +KT +  ++  D +I+  + VL E   G + Y++  +++  EK
Sbjct: 787 SIRDLSIIATPPARRLSVKTFVRAVD--DALIK--EAVLREILRGGQVYFLHNEVKTIEK 842

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                  ++           + +   HG++ + + E VM  F +    +L+ +T+IE GI
Sbjct: 843 TARYLSELIPE---------ARVGTAHGQLREKELEHVMSEFYHQRYNVLVCSTIIETGI 893

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN 613
           D+ +A+ IIIE A+ FGLAQLHQLRGRVGR    +   L+  PP  ++ ++  RL  +  
Sbjct: 894 DIPNANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLMTPPPKVMTADAEKRLEAIAQ 953

Query: 614 TED---GFLIAEEDLKQRKEGEILGIKQSG 640
            +D   GF +A  DL+ R  GE+LG  QSG
Sbjct: 954 ADDLGAGFTLATHDLEIRGAGELLGDDQSG 983


>gi|170763931|ref|ZP_02635347.2| transcription-repair coupling factor [Clostridium perfringens B
           str. ATCC 3626]
 gi|170764087|ref|ZP_02631749.2| transcription-repair coupling factor [Clostridium perfringens E
           str. JGS1987]
 gi|170662722|gb|EDT15405.1| transcription-repair coupling factor [Clostridium perfringens E
           str. JGS1987]
 gi|170712080|gb|EDT24262.1| transcription-repair coupling factor [Clostridium perfringens B
           str. ATCC 3626]
          Length = 1168

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 230/431 (53%), Gaps = 23/431 (5%)

Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  + A+ R + +++    + L   R   K   G   + + +  ++     P+  T  Q
Sbjct: 573 EWQKAKAKVRKSINDIAGDLVKLYAERSTVK---GYKFSKDTQWQKQFEDEFPYEETPDQ 629

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            SAI+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QH
Sbjct: 630 LSAIEDIKSDMEANKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQH 689

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+ +KK      I +++I+    +  + + L+ +  G   I+IGTH L    IQ+  L L
Sbjct: 690 YKNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGL 749

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R P
Sbjct: 750 LIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYP 809

Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           I+T ++  N  D++I    L+ +  +G + Y++  ++E        S+ E  N + E   
Sbjct: 810 IQTYVVEQN--DQLIRDAILREINRDG-QVYFVHNRVE--------SIQEVANYIQELVP 858

Query: 516 SSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              A +IHG+M++   E+ M  F      +L+ T++IE GID+ + + +I+ +A+  GL+
Sbjct: 859 ECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLS 918

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+QLRGRVGR  +++    LY     L++ +  RL  LK+ TE   GF IA  DL+ R 
Sbjct: 919 QLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 978

Query: 630 EGEILGIKQSG 640
            G ++G  Q G
Sbjct: 979 AGNMMGSAQHG 989


>gi|53803839|ref|YP_114301.1| transcription-repair coupling factor [Methylococcus capsulatus str.
           Bath]
 gi|53757600|gb|AAU91891.1| transcription-repair coupling factor [Methylococcus capsulatus str.
           Bath]
          Length = 1147

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 133/380 (35%), Positives = 212/380 (55%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  QE+AI+D+++D++    M R++ GDVG GKT VA+ A   A + G Q  ++
Sbjct: 599 QFPFEETPDQETAIQDVIRDLAAPRPMDRVVCGDVGFGKTEVAMRAAFIAAQNGRQVAVL 658

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQHY+       +  + +++++  + +  + + +  I  G+  I+IGTH L Q
Sbjct: 659 VPTTLLAQQHYKNFCDRFADWPMRIDVLSRFVSKKDQAQTIADIGDGKVDIVIGTHRLLQ 718

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I++  L LVI+DE+HRFGV  +    +  +    L +TATPIPRTL +   G  +IS 
Sbjct: 719 KDIRFKDLGLVIIDEEHRFGVAHKEHFKKLRSEVDFLALTATPIPRTLDMALSGLREISV 778

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R  I+T +   +   + E I R    +  G + Y++  +IE +       + E
Sbjct: 779 IATPPPHRHVIRTFVTEWDDTLVQEAITR---EIKRGGQVYFVHNKIETQPR-----LAE 830

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           R   L     + IA  HG+M + + E++M  F +    +L+ TT++E GIDV  A+ I+I
Sbjct: 831 RLEKLVPGIRTRIA--HGQMPERELENIMLDFYHQRFNVLLCTTIVESGIDVPSANTILI 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
           + A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  ++   +   GFL+
Sbjct: 889 DRADTFGLAQLHQLRGRVGRSHHRAYAYLLVPPKKAMTADAVKRLEAIEAAGELGAGFLL 948

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           + +DL+ R  GE+LG +QSG
Sbjct: 949 SSQDLEIRGAGELLGEEQSG 968


>gi|229083372|ref|ZP_04215723.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44]
 gi|228699937|gb|EEL52571.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44]
          Length = 1176

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 216/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   ++IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDVVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   I E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPGLIREAIER---ELARGGQIYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF +G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVPE---------ARVTYAHGKMNEGELESVMLSFLDGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|219853470|ref|YP_002470592.1| hypothetical protein CKR_0127 [Clostridium kluyveri NBRC 12016]
 gi|219567194|dbj|BAH05178.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1183

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 146/415 (35%), Positives = 231/415 (55%), Gaps = 21/415 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q S I+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P
Sbjct: 635  PYEETPDQLSTIQDIKMDMESDKVMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVP 694

Query: 330  IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              ILAQQHY  FI++++ +  + +++I+     A ++  ++ +  G   ++IGTH + Q 
Sbjct: 695  TTILAQQHYNNFIQRFS-DFPVKIDMISRFKTAAQQKATIKAVKIGDVDVLIGTHRILQK 753

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +Q+  L L+I+DE+ RFGV  + K+ Q      VL ++ATPIPRTL ++ +G  DIS I
Sbjct: 754  DVQFKDLGLLIIDEEQRFGVSHKEKIKQIRKNVDVLTLSATPIPRTLHMSLVGVRDISVI 813

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVER 506
               P  R PI+T ++  N  D++I R  V+  LS G + Y++  ++E  KE    S + +
Sbjct: 814  ETPPDERYPIQTYVVEYN--DQLI-RDAVLRELSRGGQVYFVYNRVENIKE--MASYIAK 868

Query: 507  FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                       +A+ HG+M + + E ++  F      +L++TT+IE G+D+ + + ++I 
Sbjct: 869  LIP-----EGKVAVAHGQMQERELEGIIMDFMQNKYDILVSTTIIETGMDIQNVNTMVIY 923

Query: 567  NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIA 621
            +A+  GL+QL+QLRGRVGR   I+ C L Y     L + +  RL V+K  TE   GF IA
Sbjct: 924  DADKMGLSQLYQLRGRVGRTNRIAYCYLSYRKDKVLKEVAEKRLKVIKEFTELGSGFKIA 983

Query: 622  EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
             +DL+ R  G ++G  Q G         +L+  +LE + K  K  + ++P  T+V
Sbjct: 984  LKDLEIRGAGNMMGSSQHG--HMAAVGYDLYCRMLEDSIKLIKGEIDKEPVETTV 1036


>gi|182624347|ref|ZP_02952132.1| transcription-repair coupling factor [Clostridium perfringens D
           str. JGS1721]
 gi|177910565|gb|EDT72938.1| transcription-repair coupling factor [Clostridium perfringens D
           str. JGS1721]
          Length = 1168

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 230/431 (53%), Gaps = 23/431 (5%)

Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  + A+ R + +++    + L   R   K   G   + + +  ++     P+  T  Q
Sbjct: 573 EWQKAKAKVRKSINDIAGDLVKLYAERSTVK---GYKFSKDTQWQKQFEDEFPYEETPDQ 629

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            SAI+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QH
Sbjct: 630 LSAIEDIKSDMEANKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQH 689

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+ +KK      I +++I+    +  + + L+ +  G   I+IGTH L    IQ+  L L
Sbjct: 690 YKNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGL 749

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R P
Sbjct: 750 LIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYP 809

Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           I+T ++  N  D++I    L+ +  +G + Y++  ++E        S+ E  N + E   
Sbjct: 810 IQTYVVEQN--DQLIRDAILREINRDG-QVYFVHNRVE--------SIQEVANYIQELVP 858

Query: 516 SSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              A +IHG+M++   E+ M  F      +L+ T++IE GID+ + + +I+ +A+  GL+
Sbjct: 859 ECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLS 918

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+QLRGRVGR  +++    LY     L++ +  RL  LK+ TE   GF IA  DL+ R 
Sbjct: 919 QLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 978

Query: 630 EGEILGIKQSG 640
            G ++G  Q G
Sbjct: 979 AGNMMGSAQHG 989


>gi|269792682|ref|YP_003317586.1| DEAD/DEAH box helicase domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100317|gb|ACZ19304.1| DEAD/DEAH box helicase domain protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 994

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 141/408 (34%), Positives = 214/408 (52%), Gaps = 32/408 (7%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +++    P+  T  Q    ++I  DM +   M R+L GDVG GKT +AL A   A  +G 
Sbjct: 464 EELRSTFPYRETVDQVRCWEEIRADMERPVPMDRLLVGDVGFGKTELALRAAFKAAMSGY 523

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q V++ P  +LA QH            + VE +   +P++ + + L   A G+  I+IGT
Sbjct: 524 QVVVVTPTTLLASQHLSTFASRLSPFPLRVEALYRFVPRSRQEEILNDFAEGRVDILIGT 583

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +  D ++   L L+++DE+HRFGV Q+ +  ++     VL+++ATPIPRTL L   G 
Sbjct: 584 HRILGDDVRARNLGLIVLDEEHRFGVMQKERWRERFPGADVLMLSATPIPRTLQLALGGY 643

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAYWICPQIEEKKESNFR 501
            DIS +T  P  R+P+ TV+ P    DE+++   +  LS G + +W              
Sbjct: 644 KDISVMTTPPVDRRPVVTVVSPWQ--DELVKGAVLRELSRGGQVFW-------------- 687

Query: 502 SVVERFNSLHEHFTSSIAII--------HGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            V  R  S+H  F  + A++        HGRM D + ES+M  F  G   +L+ TT+IE 
Sbjct: 688 -VHNRIQSMHRAFLRAKALLPGVRVEMAHGRMRDSELESLMARFVEGRLDVLLCTTIIES 746

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPLSKNSYTRLSVLK 612
           G+D+   + II+E+A   GLAQL+QLRGRVGR  + +  + LY     +  +  RL  + 
Sbjct: 747 GLDLPRVNTIIVEDAHRMGLAQLYQLRGRVGRRSDQAFALFLYPRGAEAGRALERLEAIG 806

Query: 613 NTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           + E+   GF +A  DL  R  GE+LG  Q G    L   PEL+  +LE
Sbjct: 807 SLEELGSGFHLAMMDLSIRGGGELLGTAQHGHVSSL--SPELYFQMLE 852


>gi|255521927|ref|ZP_05389164.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J1-175]
          Length = 431

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 147/440 (33%), Positives = 238/440 (54%), Gaps = 22/440 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +   ++     R+  K+     T G++  + F+ +   LK+    G  +T++GK  
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQP-YLKSKISVGETVTISGKWD 119

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGL---SVDLFKKIIVEALSRLPVLPE 187
           K + ++           S++     +E VY L   L   ++  + ++  ++ S+   + E
Sbjct: 120 KSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQ--DIEE 173

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-Q 246
            I  +LL+K       EA  I+H P   K+ E    AR R+ Y+E L  Q+ +   RK +
Sbjct: 174 VIPSNLLEKYQLMDRLEAVRILHFP---KNNEELKQARRRMVYEEFLLFQLKMQFFRKIE 230

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGK
Sbjct: 231 REKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGK 290

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+
Sbjct: 291 TVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRE 350

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL M
Sbjct: 351 LLAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFM 410

Query: 427 TATPIPRTLVLTSLGDIDIS 446
           TATPIPRTL +T+ G++D+S
Sbjct: 411 TATPIPRTLAITAFGEMDVS 430


>gi|268318833|ref|YP_003292489.1| Transcription-repair-coupling factor [Lactobacillus johnsonii
           FI9785]
 gi|262397208|emb|CAX66222.1| Transcription-repair-coupling factor [Lactobacillus johnsonii
           FI9785]
          Length = 1165

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/431 (31%), Positives = 232/431 (53%), Gaps = 21/431 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   +   +  E +A  +  L  +++ +K  G   + +  + ++     P+  T  Q 
Sbjct: 563 EWTKTKKRVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKEFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM     M R+L GDVG GKT VAL A   A+  G Q   +AP  ILAQQH+
Sbjct: 621 RSIREIKADMESTKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E ++   ++  +   +++        ++ +E +  G+  +++GTH L    +Q+  L L+
Sbjct: 681 ETMQDRFKDFPVNCALLSRFQTPTEVKEIVEGVKSGKIDMVVGTHRLLSKDVQFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IIDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T +  +  +  ++   + VL E K+    +++  +I+     +   +V +   L     
Sbjct: 801 QTYV--MEEMPSIVR--EAVLREMKRNGQVFFLHNRID-----DIDKIVSQLEELIPE-- 849

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +I+E+A+H+GL+Q
Sbjct: 850 AKIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYGLSQ 909

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGR+GR   ++    LY P   L++    RLS +++ TE   GF IA  DL  R  
Sbjct: 910 LYQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGA 969

Query: 631 GEILGIKQSGM 641
           G +LG +Q G 
Sbjct: 970 GNMLGKQQHGF 980


>gi|30260244|ref|NP_842621.1| transcription-repair coupling factor [Bacillus anthracis str. Ames]
 gi|47525306|ref|YP_016655.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183087|ref|YP_026339.1| transcription-repair coupling factor [Bacillus anthracis str.
           Sterne]
 gi|65317513|ref|ZP_00390472.1| COG1197: Transcription-repair coupling factor (superfamily II
           helicase) [Bacillus anthracis str. A2012]
 gi|165872560|ref|ZP_02217192.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0488]
 gi|167635067|ref|ZP_02393384.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0442]
 gi|167641515|ref|ZP_02399763.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0193]
 gi|170688877|ref|ZP_02880079.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0465]
 gi|170707542|ref|ZP_02897995.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0389]
 gi|177655328|ref|ZP_02936857.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0174]
 gi|190568951|ref|ZP_03021852.1| transcription-repair coupling factor [Bacillus anthracis
           Tsiankovskii-I]
 gi|227812727|ref|YP_002812736.1| transcription-repair coupling factor [Bacillus anthracis str. CDC
           684]
 gi|229603766|ref|YP_002864705.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0248]
 gi|254682320|ref|ZP_05146181.1| transcription-repair coupling factor [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735455|ref|ZP_05193163.1| transcription-repair coupling factor [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744643|ref|ZP_05202322.1| transcription-repair coupling factor [Bacillus anthracis str.
           Kruger B]
 gi|254756348|ref|ZP_05208377.1| transcription-repair coupling factor [Bacillus anthracis str.
           Vollum]
 gi|254762404|ref|ZP_05214246.1| transcription-repair coupling factor [Bacillus anthracis str.
           Australia 94]
 gi|30253565|gb|AAP24107.1| transcription-repair coupling factor [Bacillus anthracis str. Ames]
 gi|47500454|gb|AAT29130.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177014|gb|AAT52390.1| transcription-repair coupling factor [Bacillus anthracis str.
           Sterne]
 gi|164711688|gb|EDR17233.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0488]
 gi|167510500|gb|EDR85898.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0193]
 gi|167529541|gb|EDR92291.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0442]
 gi|170127538|gb|EDS96412.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0389]
 gi|170667101|gb|EDT17862.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0465]
 gi|172080169|gb|EDT65262.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0174]
 gi|190559875|gb|EDV13859.1| transcription-repair coupling factor [Bacillus anthracis
           Tsiankovskii-I]
 gi|227004902|gb|ACP14645.1| transcription-repair coupling factor [Bacillus anthracis str. CDC
           684]
 gi|229268174|gb|ACQ49811.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0248]
          Length = 1176

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|329889842|ref|ZP_08268185.1| transcription-repair-coupling factor [Brevundimonas diminuta ATCC
           11568]
 gi|328845143|gb|EGF94707.1| transcription-repair-coupling factor [Brevundimonas diminuta ATCC
           11568]
          Length = 744

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 153/469 (32%), Positives = 243/469 (51%), Gaps = 27/469 (5%)

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           AR+  A + L A    L+ +  +    +   I     +  +     P+  T  Q +AI D
Sbjct: 149 ARKAKAKERLRAMAEGLIALAAKRALRVSDAITPPAGLFDEFCARFPYEETDDQLNAIGD 208

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           +L+D+ +   M R++ GDVG GKT VAL A       G Q  I+ P  +LA+QH++   +
Sbjct: 209 VLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVCPTTLLARQHFKTFSE 268

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                 I V  ++  +      +    +  G   I++GTHA+  D + +  L LVIVDE+
Sbjct: 269 RFAGWPIKVRHLSRMVTAKDANETRAGLKDGSFEIVVGTHAVLADQVGFKDLGLVIVDEE 328

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             FGV+ + KL       H+L +TATPIPRTL +   G  ++S I   P  R  ++T + 
Sbjct: 329 QHFGVKHKEKLKSLRADVHLLTLTATPIPRTLQMALSGIREMSIIATPPVDRLAVRTYVT 388

Query: 464 PINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519
           P    D V+ R + +L E   G +AY++ P++++  +      +ERF  L E        
Sbjct: 389 PW---DPVLVR-EALLREKYRGGQAYYVAPRLKDLPD------IERF--LREQVPEVKFV 436

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+MS    E+VM +F +G   +L++TT++E GID+  A+ +++  A+ FGLAQLHQ+
Sbjct: 437 VGHGQMSPTQLEAVMSAFYDGEYDVLVSTTIVESGIDIPTANTLVVHRADMFGLAQLHQI 496

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGR+GR +  +   L   P  PLS ++  RL VL++ ++   GF +A  DL QR  G +L
Sbjct: 497 RGRIGRSKARAFAYLTTDPTKPLSLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNLL 556

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           G +QSG  + +    EL+  +LE A  + +      PD    RG S  I
Sbjct: 557 GDEQSGHIREVGV--ELYQQMLEDAVAELREQGEAAPD----RGWSPSI 599


>gi|196036345|ref|ZP_03103742.1| transcription-repair coupling factor [Bacillus cereus W]
 gi|196041756|ref|ZP_03109046.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99]
 gi|196047377|ref|ZP_03114590.1| transcription-repair coupling factor [Bacillus cereus 03BB108]
 gi|218901255|ref|YP_002449089.1| transcription-repair coupling factor [Bacillus cereus AH820]
 gi|225862106|ref|YP_002747484.1| transcription-repair coupling factor [Bacillus cereus 03BB102]
 gi|228925307|ref|ZP_04088404.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931556|ref|ZP_04094463.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228943860|ref|ZP_04106246.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229089185|ref|ZP_04220467.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42]
 gi|229119716|ref|ZP_04248978.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201]
 gi|229182448|ref|ZP_04309700.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1]
 gi|301051789|ref|YP_003790000.1| transcription-repair coupling factor [Bacillus anthracis CI]
 gi|195990975|gb|EDX54946.1| transcription-repair coupling factor [Bacillus cereus W]
 gi|196021779|gb|EDX60473.1| transcription-repair coupling factor [Bacillus cereus 03BB108]
 gi|196027376|gb|EDX65993.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99]
 gi|218538935|gb|ACK91333.1| transcription-repair coupling factor [Bacillus cereus AH820]
 gi|225786910|gb|ACO27127.1| transcription-repair coupling factor [Bacillus cereus 03BB102]
 gi|228601028|gb|EEK58596.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1]
 gi|228663741|gb|EEL19319.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201]
 gi|228694148|gb|EEL47829.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42]
 gi|228815817|gb|EEM62052.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228828108|gb|EEM73835.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228834354|gb|EEM79894.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|300373958|gb|ADK02862.1| transcription-repair coupling factor [Bacillus cereus biovar
           anthracis str. CI]
          Length = 1176

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|228912793|ref|ZP_04076441.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228846853|gb|EEM91857.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 1176

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|328551756|gb|AEB22248.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
           TA208]
          Length = 1177

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/380 (35%), Positives = 212/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  +I++I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P
Sbjct: 621 PYQETDDQLRSIQEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE I +  Q+  I + +++    +    + ++ + +G   I+IGTH L    
Sbjct: 681 TTILAQQHYETIMERFQDYPINIGLLSRFRTRKESNETIKGLKNGTVDIVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P  R P++T ++  N   + E IER    L+ G + Y++  +++  E+K      +V 
Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVDDIERKADEISMLVP 857

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +A  HG+M++ + ESVM +F  G   +L++TT+IE G+D+ + + +I+
Sbjct: 858 ---------DAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIV 908

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            + +  GL+QL+QLRGRVGR   ++     Y     L++ +  RL  +K  TE   GF I
Sbjct: 909 FDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKI 968

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +Q G
Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988


>gi|308171946|ref|YP_003918651.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
           DSM 7]
 gi|307604810|emb|CBI41181.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
           DSM 7]
 gi|328910016|gb|AEB61612.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
           LL3]
          Length = 1177

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/380 (35%), Positives = 212/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  +I++I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P
Sbjct: 621 PYQETDDQLRSIQEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE I +  Q+  I + +++    +    + ++ + +G   I+IGTH L    
Sbjct: 681 TTILAQQHYETIMERFQDYPINIGLLSRFRTRKESNETIKGLKNGTVDIVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P  R P++T ++  N   + E IER    L+ G + Y++  +++  E+K      +V 
Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVDDIERKADEISMLVP 857

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +A  HG+M++ + ESVM +F  G   +L++TT+IE G+D+ + + +I+
Sbjct: 858 ---------DAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIV 908

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            + +  GL+QL+QLRGRVGR   ++     Y     L++ +  RL  +K  TE   GF I
Sbjct: 909 FDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKI 968

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +Q G
Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988


>gi|312134559|ref|YP_004001897.1| transcription-repair coupling factor [Caldicellulosiruptor
           owensensis OL]
 gi|311774610|gb|ADQ04097.1| transcription-repair coupling factor [Caldicellulosiruptor
           owensensis OL]
          Length = 1141

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 141/429 (32%), Positives = 233/429 (54%), Gaps = 18/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++     E++A  +  L  ++Q  +  G   + +    ++     P++ T+ Q 
Sbjct: 554 EWQRQKQKVKKSLEVVAKDLVELYAKRQLGQ--GFKFSKDTVWQKEFEEKFPYTETEGQL 611

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I +DM  +  M RIL GDVG GKT VA+ A   AV    Q  ++ P  ILAQQHY
Sbjct: 612 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 671

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                  ++  + +E+++    +  ++K ++ +  G   I+IGTH L    +++  L L+
Sbjct: 672 MTFSARMKDFPVTIEVLSRLKSETQQKKIIKGLREGTIDIVIGTHRLLSSDVKFKDLGLL 731

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+H+FGV+ + K+ +  T   VL +TATPIPRTL +  LG  D+S I + P  R P+
Sbjct: 732 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRFPV 791

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++  N   I E I R    +S G + +++  ++++ +E     V  +  +L      
Sbjct: 792 QTFVLEYNERIIKEAILR---EISRGGQVFYLYNRVKDIQE-----VAAKLQNLVGE-DV 842

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HG+M + + E V+  F  G   +L+ TT+IE G+D+ + + +I+E+++  GLAQL
Sbjct: 843 KIACAHGQMEEEELEEVLIDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLAQL 902

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGRVGR   I+     +     LS+ +  RL+ +K  TE   GF IA  DL+ R  G
Sbjct: 903 YQLRGRVGRSSRIAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRGAG 962

Query: 632 EILGIKQSG 640
            I+G  Q G
Sbjct: 963 SIIGKLQHG 971


>gi|119505858|ref|ZP_01627923.1| transcription-repair coupling protein Mfd [marine gamma
           proteobacterium HTCC2080]
 gi|119458286|gb|EAW39396.1| transcription-repair coupling protein Mfd [marine gamma
           proteobacterium HTCC2080]
          Length = 1150

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 140/431 (32%), Positives = 224/431 (51%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R        +A Q+  +  R++ ++  G    ++    Q+     PF  T  Q 
Sbjct: 552 QWEKARRRAREKANDVAAQLLEVYARREARQ--GFQCELDETAWQRFSEEFPFEETPDQS 609

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI+ +  DM     M R++ GDVG GKT VA+ A   A++   Q  I+ P  +LAQQHY
Sbjct: 610 AAIEAVRADMCATKVMDRLVCGDVGFGKTEVAMRAAFIAIQNNKQVAILVPTTLLAQQHY 669

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              +    +  + VE+++     +      +R+A G   ++IGTH L Q +  +  L L+
Sbjct: 670 NSFRDRFADWPVKVEVVSRFQSNSDITSVQKRVASGDVDLLIGTHKLLQSTFAFEDLGLL 729

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+HRFGV+Q+  +        +L MTATPIPRTL +   G  D+S I   PA R  I
Sbjct: 730 VIDEEHRFGVKQKEAIKALRAQVDILTMTATPIPRTLNMALGGLRDLSIIATPPARRLSI 789

Query: 459 KTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           KT +    I+ + E I R  +    G + Y++  +++  E+  S  R ++          
Sbjct: 790 KTFVREHSISLVKEAILRETL---RGGQVYYLHNEVKTIEETASRLREMLPNL------- 839

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             S+ + HG++ +   E VM  F +    +L+ +T+IE GID+ +A+ III+ A+ FGLA
Sbjct: 840 --SVGVGHGQLRETALEGVMTDFYHLRHHILVCSTIIETGIDIPNANTIIIDRADKFGLA 897

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRK 629
           QLHQLRGRVGR    +   LL  P   ++ ++  RL  ++       G+L+A  DL+ R 
Sbjct: 898 QLHQLRGRVGRSHHQAYAYLLCPPRSTMTSDAEKRLEAIEAAGALGAGYLLATHDLEIRG 957

Query: 630 EGEILGIKQSG 640
            GE+LG +QSG
Sbjct: 958 AGELLGDEQSG 968


>gi|49479988|ref|YP_034406.1| transcription-repair coupling factor [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49331544|gb|AAT62190.1| transcription-repair coupling factor [Bacillus thuringiensis
           serovar konkukian str. 97-27]
          Length = 1178

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 616 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 675

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 676 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 735

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 736 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 795

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 796 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 852

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 853 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 903

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 904 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 963

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 964 LGSGFKIAMRDLSIRGAGNLLGAEQHG 990


>gi|168183619|ref|ZP_02618283.1| transcription-repair coupling factor [Clostridium botulinum Bf]
 gi|237797000|ref|YP_002864552.1| transcription-repair coupling factor [Clostridium botulinum Ba4
           str. 657]
 gi|182673263|gb|EDT85224.1| transcription-repair coupling factor [Clostridium botulinum Bf]
 gi|229263299|gb|ACQ54332.1| transcription-repair coupling factor [Clostridium botulinum Ba4
           str. 657]
          Length = 1168

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 145/437 (33%), Positives = 232/437 (53%), Gaps = 35/437 (8%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EWT +  + + + +E+    + L  +R   K   G   + +    ++     P+  T  Q
Sbjct: 573 EWTKTKNKVKKSIEEIAEDLVKLYAIRATLK---GYKYSDDTVWQKQFEEEFPYEETPDQ 629

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI+DI +DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQH
Sbjct: 630 LLAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQH 689

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y   K+   +  I V++I+     + ++  ++ I  G   I+IGTH + Q  I++  L L
Sbjct: 690 YNNFKQRFSDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGL 749

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  DIS I   P  R P
Sbjct: 750 LIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYP 809

Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           ++T ++  N  D++I + +   +S G + Y++  ++E               S+HE  + 
Sbjct: 810 VQTYVVEYN--DQLIRDSILREISRGGQIYFVYNRVE---------------SIHEMASY 852

Query: 516 -------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                    + I HG+M + + E+V+  F      +LIATT+IE G+D+ + + +II +A
Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623
           +  GL+QL+QLRGRVGR   ++ C L Y     L++ +  RL  +K+ TE   GF IA +
Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G ++G  Q G
Sbjct: 973 DLEIRGAGNMMGSAQHG 989


>gi|118475824|ref|YP_892975.1| transcription-repair coupling factor [Bacillus thuringiensis str. Al
            Hakam]
 gi|118415049|gb|ABK83468.1| transcription-repair coupling factor [Bacillus thuringiensis str. Al
            Hakam]
          Length = 1207

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q+   + P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 645  QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 704

Query: 323  QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 705  QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 764

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 765  HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 824

Query: 443  IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
             D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 825  RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 881

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 882  EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 932

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
            + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 933  NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 992

Query: 616  --DGFLIAEEDLKQRKEGEILGIKQSG 640
               GF IA  DL  R  G +LG +Q G
Sbjct: 993  LGSGFKIAMRDLSIRGAGNLLGAEQHG 1019


>gi|319940955|ref|ZP_08015292.1| transcription-repair coupling factor [Sutterella wadsworthensis
           3_1_45B]
 gi|319805528|gb|EFW02323.1| transcription-repair coupling factor [Sutterella wadsworthensis
           3_1_45B]
          Length = 1194

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 142/397 (35%), Positives = 204/397 (51%), Gaps = 19/397 (4%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           GI   ++    Q       F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL
Sbjct: 588 GIRFKIDPADYQAFREGFAFDETPDQSTAINAVVDDMTSGKSMDRLVCGDVGFGKTEVAL 647

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   A  +G Q  ++ P  +LA+QH    +   +   + V  ++         K L  +
Sbjct: 648 RAAFIAAMSGRQVAVLCPTTLLAEQHAATFRDRFRAWPVTVAELSRFRTGKESAKVLAGL 707

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A G   I+IGTH L  D  Q+  L LV++DE+HRFGV+Q+  L +      VL +TATPI
Sbjct: 708 ADGTVDIVIGTHKLLSDKAQFKNLGLVVIDEEHRFGVRQKEVLRKIRAEVDVLTLTATPI 767

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICP 490
           PRTL ++  G  D S I   P  R  +KT +   +  D  I E +   L  G + Y++  
Sbjct: 768 PRTLSMSLEGIRDFSVIATAPERRLAVKTFV--TSEQDGTIREAVLRELKRGGQVYYLHN 825

Query: 491 QIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           ++   E   +   ++V           + IA+ HG+M + + E VM  F      +L+ +
Sbjct: 826 EVNTIENARARLETLVPE---------ARIAVAHGQMRERELEHVMRDFYQQRFNVLLCS 876

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYT 606
           T+IE GIDV  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL  P    +K++  
Sbjct: 877 TIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPDGAFTKDAQK 936

Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           RL  ++  ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 937 RLDAIQALEDLGSGFYLAMHDLEIRGAGEVLGEHQSG 973


>gi|237748656|ref|ZP_04579136.1| transcription-repair coupling factor [Oxalobacter formigenes
           OXCC13]
 gi|229380018|gb|EEO30109.1| transcription-repair coupling factor [Oxalobacter formigenes
           OXCC13]
          Length = 1152

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 144/412 (34%), Positives = 219/412 (53%), Gaps = 17/412 (4%)

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A ++  L  R+  +K  G P  +     +    +  F  T  Q +AI  +++DM+    M
Sbjct: 570 AAELLDLYARRSMRK--GFPFPLTKNDYEAFADSFGFEETPDQAAAIASVMEDMTSDKPM 627

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QH +  +    +  + +  
Sbjct: 628 DRLICGDVGFGKTEVALRAAFIAVMGGKQVALLAPTTLLAEQHAQTFRDRFADWPVRISE 687

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           ++    Q    + ++ +  G   I+IGTH L    + + +L L+I+DE+HRFGV+Q+  L
Sbjct: 688 LSRFRTQKQVNQTIKGMEDGTVDIVIGTHKLLSKDVSFNRLGLIIIDEEHRFGVRQKEAL 747

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-E 473
                   VL +TATPIPRTL +   G    S I   P  R  IKT +   N  D VI E
Sbjct: 748 KAIRAEVDVLTLTATPIPRTLGMALDGLRSFSIIATAPQKRLAIKTFVRSEN--DSVIRE 805

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
                L  G + Y++  ++E  +  N R ++E  N L E   + I + HG+M + + E V
Sbjct: 806 ACMRELKRGGQVYFLHNEVETIE--NRRIMLE--NLLPE---ARIGVAHGQMHERELEKV 858

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +    +L+ TT+IE GIDV +A+ +++  A+ FGLAQLHQLRGR+GR    +   
Sbjct: 859 MRDFVSHRYNILLCTTIIETGIDVPNANTMVMHRADKFGLAQLHQLRGRIGRSHHQAYAY 918

Query: 594 LLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           LL +    LSK +  RL  ++  E+   GF +A  DL+ R  GE+LG +QSG
Sbjct: 919 LLVNDTQTLSKQAQRRLEAIRQMEELGSGFFLAMHDLEIRGAGEVLGEEQSG 970


>gi|110803113|ref|YP_699740.1| transcription-repair coupling factor [Clostridium perfringens
           SM101]
 gi|110683614|gb|ABG86984.1| transcription-repair coupling factor [Clostridium perfringens
           SM101]
          Length = 1162

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 145/430 (33%), Positives = 230/430 (53%), Gaps = 21/430 (4%)

Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  + A+ R + +++    + L   R   K   G   + + +  ++     P+  T  Q
Sbjct: 567 EWQKAKAKVRKSINDIAGDLVKLYAERSTVK---GYKFSKDTQWQKQFEDEFPYEETPDQ 623

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            +AI+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QH
Sbjct: 624 LAAIEDIKSDMESNKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQH 683

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+ +K+      I +++I+    +  + + L+ +  G   I+IGTH L    IQ+  L L
Sbjct: 684 YKNMKRRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGL 743

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R P
Sbjct: 744 LIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYP 803

Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           I+T ++  N  D++I + +   ++ G + Y++  ++E        S+ E  N + E    
Sbjct: 804 IQTYVVEQN--DQLIRDAILREINRGGQVYFVHNRVE--------SIQEVANYIQELVPE 853

Query: 517 SIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             A +IHG+M++   E+ M  F      +L+ T++IE GID+ + + +I+ +A+  GL+Q
Sbjct: 854 CKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQ 913

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR  +++    LY     L++ +  RL  LK+ TE   GF IA  DL+ R  
Sbjct: 914 LYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGA 973

Query: 631 GEILGIKQSG 640
           G ++G  Q G
Sbjct: 974 GNMMGSAQHG 983


>gi|222056789|ref|YP_002539151.1| transcription-repair coupling factor [Geobacter sp. FRC-32]
 gi|221566078|gb|ACM22050.1| transcription-repair coupling factor [Geobacter sp. FRC-32]
          Length = 1169

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 148/456 (32%), Positives = 243/456 (53%), Gaps = 29/456 (6%)

Query: 220  W-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            W  + A+ R A  E+ AG++  +   +Q ++  G   +   ++ Q+      +  T  Q+
Sbjct: 581  WEKTKAKARAAIQEM-AGELLKIYAARQVEE--GHAFSPPDELYQEFEAAFAYEETPDQQ 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+D+L DM  K  M R++ GDVG GKT VAL     AV  G Q  ++ P  +LAQQH 
Sbjct: 638  AAIEDVLLDMESKKPMDRLICGDVGYGKTEVALRGAFKAVMDGKQVAVLVPTTVLAQQHL 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E      ++  + VE+++       +++ +E + +G   ++IGTH L Q  I +  L L+
Sbjct: 698  ETFSARLKSYPVKVEMLSRFRTPKEQKEIIEGVKNGTVDVVIGTHRLLQKDIVFKDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + +L +      ++ +TATPIPRTL ++ +G  D+S I   P  R  I
Sbjct: 758  IIDEEQRFGVTHKERLKKYRAVVDIMTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLAI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--- 515
            KT +   +  D + E +   L  G + +++             + V+   ++ EH     
Sbjct: 818  KTFVARTSD-DLIREAVLRELRRGGQIFFV------------HNRVQTIGAMAEHLQRIV 864

Query: 516  --SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              + IA+ HG+M + + E VM SF +G   LL+ TT+IE G+D+  A+ +I+  A+ FGL
Sbjct: 865  PEAKIAVGHGQMEEKELERVMLSFMHGESNLLLCTTIIESGLDIPTANTLIVNRADTFGL 924

Query: 574  AQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
            +QL+QLRGRVGR ++ +   LL      +S ++  RL +++   +   GF IA  DL+ R
Sbjct: 925  SQLYQLRGRVGRSKQRAYAYLLIPGEGAISADARERLKIIQELTELGAGFRIATHDLEIR 984

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
              G++LG +QSG         EL+  LLE A +  K
Sbjct: 985  GAGDLLGARQSG--DIAAVGFELYTELLEEAIRQLK 1018


>gi|194018017|ref|ZP_03056624.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061]
 gi|194010354|gb|EDW19929.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061]
          Length = 1177

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 210/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  +I +I QDM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P
Sbjct: 621 PYQETDDQIRSIHEIKQDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQH++ I    Q+  + +  ++    +    + L+ + +G   ++IGTH L    
Sbjct: 681 TTILAQQHFDTIMDRFQDYPVKIAQLSRFRTRKETTETLKGLKNGTIDMVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 741 IVYKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTATPIPRTLHMSMLGVRDLSVIE 800

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K      +V 
Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVEDIERKADEISMLVP 857

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + ++  HG+MS+ + ESVM +F  G   +L++TT+IE G+D+ + + +I+
Sbjct: 858 ---------DAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDIPNVNTLIV 908

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE   GF I
Sbjct: 909 HDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFTELGSGFKI 968

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +Q G
Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988


>gi|114570035|ref|YP_756715.1| transcription-repair coupling factor [Maricaulis maris MCS10]
 gi|114340497|gb|ABI65777.1| transcription-repair coupling factor [Maricaulis maris MCS10]
          Length = 1172

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 139/412 (33%), Positives = 223/412 (54%), Gaps = 17/412 (4%)

Query: 254  PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            PI        +     P+  T  Q +AI D+L D+ +   M R++ GDVG GKT VAL A
Sbjct: 602  PIETSSGAFDEFCSTFPYPETDDQLNAIDDVLTDLGRGRPMDRLICGDVGFGKTEVALRA 661

Query: 314  MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                  +G Q  I+AP  +LA+QH++      +   + V +++  +     +   + +A 
Sbjct: 662  AFVVALSGQQVAIVAPTTLLARQHFKTFSDRFRGWPVKVRLLSRLVTAKEAKATRDELAA 721

Query: 374  GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            GQ  I+IGTHAL   ++++  L L++VDE+  FGV+ + +L +  +  HVL +TATPIPR
Sbjct: 722  GQVEIVIGTHALLAKTVKFRDLGLLVVDEEQHFGVKHKERLKELRSDVHVLTLTATPIPR 781

Query: 434  TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            TL L   G  D+S I   P  R  ++T + P + +  V E L      G +A+++ P+I 
Sbjct: 782  TLQLALTGIRDLSIIATPPVDRLAVRTYVAPFDPV-SVREALLREKYRGGQAFFVVPRIT 840

Query: 494  EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            + +E+       RF  L E     S    HG+M+    E +M +F  G   +L++TT++E
Sbjct: 841  DLEETT------RF--LRESVPEVSFVAAHGQMAASQLEDIMTAFYEGRYDVLLSTTIVE 892

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSV 610
             GID+  A+ +II  A+ FGL+QL+QLRGRVGR +  +   L       +++++  RL V
Sbjct: 893  SGIDIPTANTLIIHRADRFGLSQLYQLRGRVGRSKTRAYAYLTTPMRQKITESAEKRLKV 952

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +++ +    GF +A  DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 953  MQSLDSLGAGFTLASHDLDLRGGGNLLGEEQSGHIRDVGV--ELYQSMLEEA 1002


>gi|261417240|ref|YP_003250923.1| transcription-repair coupling factor [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373696|gb|ACX76441.1| transcription-repair coupling factor [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327048|gb|ADL26249.1| transcription-repair coupling factor [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 1132

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 140/412 (33%), Positives = 225/412 (54%), Gaps = 17/412 (4%)

Query: 237 QIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           QIA  L+    K+E+  G     +G + ++   +  + PT  Q  A  DI +DM     M
Sbjct: 530 QIARDLVELYAKRELVEGFGFPPDGNMQKEFEDSFEYDPTPDQLRATADIKRDMESHRPM 589

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VA+ A    V +  Q  I+ P  ILA QHYE   +      + + +
Sbjct: 590 DRLICGDVGFGKTEVAMRAAFKCVSSNKQVAILVPTTILAAQHYENFCERFAAYPVKIAL 649

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +        +++  + IA G  +I+IGTHAL  +  ++  L L+I+DE+ +FGV+Q+ KL
Sbjct: 650 MNRYKSAKEKKEIFKEIAAGTVNIVIGTHALLSNKSEFKDLGLLIIDEEQKFGVKQKEKL 709

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            Q   A   L M+ATPIPR+L L+  G  DIS I   P  R P++T +  + R DEV++ 
Sbjct: 710 RQLRLAVDTLSMSATPIPRSLHLSMTGVRDISLINTPPINRLPVETKL--MQRDDEVLKN 767

Query: 475 LKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
             +  L+ G + + +  +++         + E   ++     + +A+ HG+M D + E V
Sbjct: 768 AILDELARGGQVFVVNDRVQ-----TIYKLTEDIEAMAPE--AKVAVAHGQMEDHELERV 820

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           MD+F +    +L++T++IE G+DV +A+ III NA HFG++QL+Q+RGRVGR   ++   
Sbjct: 821 MDAFLSRKFDILVSTSIIESGLDVPNANTIIIMNAHHFGISQLYQMRGRVGRSSVLAKAF 880

Query: 594 LL--YHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           L+      +S+ S  RL  L+   D   G+ +A  DL+ R  G +LG +Q G
Sbjct: 881 LVIPQRGEISQESMRRLKALEQFTDLGSGYQLAMRDLEIRGAGNLLGQEQHG 932


>gi|218261990|ref|ZP_03476631.1| hypothetical protein PRABACTJOHN_02302 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223648|gb|EEC96298.1| hypothetical protein PRABACTJOHN_02302 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1126

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 142/408 (34%), Positives = 218/408 (53%), Gaps = 15/408 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+L+  + K+E G   + +  +  ++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 530 LILLYSKRKQEKGFAYSPDSFMQHELEASFIYEDTPDQMKATADVKTDMENDRPMDRLIC 589

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+   +  ++    +E I+   
Sbjct: 590 GDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQTFSERLKDFPCRIEYISRAR 649

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                R+ L+ +  G+ +IIIGTH +    + +  L L+I+DE+ +FGV  + KL Q   
Sbjct: 650 TAKEIRETLKDLKEGKINIIIGTHRIVGKDVTFKDLGLLIIDEEQKFGVSVKEKLRQLKA 709

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L MTATPIPRTL  + +G  D+S IT  P  R P++T +   N  D + E +   +
Sbjct: 710 NVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEVERFNP-DIIREAINFEM 768

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S   + ++I  +I+   E    ++V+R     E   + IA+ HG+M     E ++  F N
Sbjct: 769 SRNGQVFFINNRIQNIYE--MEALVKR-----EVPDARIAVGHGQMEPDKLEKIILDFVN 821

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +LIAT+++E GIDV +A+ III NA+ FGL+ LHQLRGRVGR    + C LL  PP
Sbjct: 822 YEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQLRGRVGRSNRKAFCYLL-SPP 880

Query: 600 LS---KNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           LS   + +  RL  ++N  +   G  IA +DL  R  G +LG +QSG 
Sbjct: 881 LSSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNMLGAEQSGF 928


>gi|182420518|ref|ZP_02643226.2| transcription-repair coupling factor [Clostridium perfringens NCTC
           8239]
 gi|182380350|gb|EDT77829.1| transcription-repair coupling factor [Clostridium perfringens NCTC
           8239]
          Length = 1168

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 230/431 (53%), Gaps = 23/431 (5%)

Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  + A+ R + +++    + L   R   K   G   + + +  ++     P+  T  Q
Sbjct: 573 EWQKAKAKVRKSINDIAGDLVKLYAERSTVK---GYKFSKDTQWQKQFEDEFPYEETPDQ 629

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            SAI+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QH
Sbjct: 630 LSAIEDIKSDMEANKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQH 689

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+ +KK      I +++I+    +  + + L+ +  G   I+IGTH L    IQ+  L L
Sbjct: 690 YKNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGL 749

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R P
Sbjct: 750 LIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYP 809

Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           I+T ++  N  D++I    L+ +  +G + Y++  ++E        S+ E  N + E   
Sbjct: 810 IQTYVVEQN--DQLIRDAILREINRDG-QVYFVHNRVE--------SIQEIANYIQELVP 858

Query: 516 SSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              A +IHG+M++   E+ M  F      +L+ T++IE GID+ + + +I+ +A+  GL+
Sbjct: 859 ECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLS 918

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+QLRGRVGR  +++    LY     L++ +  RL  LK+ TE   GF IA  DL+ R 
Sbjct: 919 QLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRG 978

Query: 630 EGEILGIKQSG 640
            G ++G  Q G
Sbjct: 979 AGNMMGSAQHG 989


>gi|170756439|ref|YP_001783179.1| transcription-repair coupling factor [Clostridium botulinum B1 str.
           Okra]
 gi|169121651|gb|ACA45487.1| transcription-repair coupling factor [Clostridium botulinum B1 str.
           Okra]
          Length = 1168

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 145/437 (33%), Positives = 232/437 (53%), Gaps = 35/437 (8%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EWT +  + + + +E+    + L  +R   K   G   + +    ++     P+  T  Q
Sbjct: 573 EWTKTKNKVKKSIEEIAEDLVKLYAIRATLK---GYKYSDDTVWQKQFEEEFPYEETPDQ 629

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI+DI +DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQH
Sbjct: 630 LLAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQH 689

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y   K+   +  I V++I+     + ++  ++ I  G   I+IGTH + Q  I++  L L
Sbjct: 690 YNNFKQRFSDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGL 749

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  DIS I   P  R P
Sbjct: 750 LIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYP 809

Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           ++T ++  N  D++I + +   +S G + Y++  ++E               S+HE  + 
Sbjct: 810 VQTYVVEYN--DQLIRDSILREISRGGQIYFVYNRVE---------------SIHEMASY 852

Query: 516 -------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                    + I HG+M + + E+V+  F      +LIATT+IE G+D+ + + +II +A
Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623
           +  GL+QL+QLRGRVGR   ++ C L Y     L++ +  RL  +K+ TE   GF IA +
Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G ++G  Q G
Sbjct: 973 DLEIRGAGNMMGSAQHG 989


>gi|47569902|ref|ZP_00240569.1| transcription-repair coupling factor [Bacillus cereus G9241]
 gi|228983309|ref|ZP_04143523.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229194444|ref|ZP_04321248.1| Transcription-repair-coupling factor [Bacillus cereus m1293]
 gi|47553436|gb|EAL11820.1| transcription-repair coupling factor [Bacillus cereus G9241]
 gi|228589034|gb|EEK47048.1| Transcription-repair-coupling factor [Bacillus cereus m1293]
 gi|228776423|gb|EEM24775.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 1176

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|303257068|ref|ZP_07343082.1| transcription-repair coupling factor [Burkholderiales bacterium
           1_1_47]
 gi|302860559|gb|EFL83636.1| transcription-repair coupling factor [Burkholderiales bacterium
           1_1_47]
          Length = 1157

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/377 (36%), Positives = 205/377 (54%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T+ Q +AI  + +DM     M R++ GDVG GKT VAL A   AV  G Q  ++ P 
Sbjct: 614 FEETEDQLAAINAVYRDMISDKPMDRLVCGDVGFGKTEVALRAAFMAVMGGKQVAVLCPT 673

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH +  +    N  + +  ++          ++E I +G   I++GTH L  D +
Sbjct: 674 TLLAEQHAQTFRDRFANWPVRIAELSRFRSSKEVNASIEGIKNGTIDIVVGTHKLLSDKV 733

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           Q+  L LV++DE+HRFGV+Q+ +L    +   +L +TATPIPRTL ++  G  D S I  
Sbjct: 734 QFKDLGLVVIDEEHRFGVRQKEQLKSLRSEVDILTLTATPIPRTLSMSLEGIRDFSVIAT 793

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R  IKT    + R  + + R  V+  L  G + Y++  ++E  + +       R +
Sbjct: 794 APQKRLAIKTF---VQRESDSLIREAVLRELKRGGQVYFLHNEVETIENARM-----RLD 845

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L     + I + HG+M++ + E VM  F      +L+ TT+IE GID+ +A+ II+  A
Sbjct: 846 QLLPE--ARIGVAHGQMNERELERVMRDFYAQRTNVLLCTTIIETGIDIPNANTIIMHRA 903

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLAQLHQLRGRVGR    +   LL      ++KN+  RL  +K  E+   GF +A  
Sbjct: 904 DKFGLAQLHQLRGRVGRSHHQAYAYLLTPGEGAMTKNAEKRLEAIKEMEELGSGFYLAMH 963

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  GE+LG  QSG
Sbjct: 964 DLEIRGAGEVLGEHQSG 980


>gi|303232983|ref|ZP_07319663.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4]
 gi|302480910|gb|EFL43990.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4]
          Length = 1138

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 142/430 (33%), Positives = 227/430 (52%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W+       A  + LA  +  L  R+Q     G   + + +  + +  + P++ T  QE
Sbjct: 552 DWSRACSRARASAKKLAFDLVDLYTRRQTVHGYGFSYDNQAQ--RDMEASFPYTLTSDQE 609

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A+ DI  DM Q   M R+L GDVG GKT VAL A     + G Q +++ P  ILAQQH+
Sbjct: 610 RALADIKADMEQAKPMDRLLCGDVGFGKTEVALRAAFKCCQDGKQVMVLCPTTILAQQHF 669

Query: 339 E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           E F +++T    + V +++  +  A +R+ALE  + G   ++IGTH L    +    L L
Sbjct: 670 ETFFERFTP-FDLCVRVLSRFISPAEQRRALEGFSAGDVDVLIGTHRLLSSDVNPANLGL 728

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI+DE+ RFGVQ + +L        VL ++ATPIPRT+ +   G  D+S I   P GR  
Sbjct: 729 VIIDEEQRFGVQHKEQLKTIREQVDVLTLSATPIPRTMQMAMSGVRDMSLILTPPPGR-- 786

Query: 458 IKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            K+VI+ +   D   + + ++  L+   + Y++  ++     +     +ER  S      
Sbjct: 787 -KSVIVHVGEWDADVISDAIRFELARSGQVYYVSNRV-----ATIDQAIERVRSAAPE-- 838

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + + + HG+MS    E VM SF      +L+ATT+IE GID    + +IIE+A+  GLAQ
Sbjct: 839 ARVGVAHGQMSAAQIEDVMLSFAEREIDVLVATTIIESGIDNPHTNTLIIEDAQRLGLAQ 898

Query: 576 LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           L+QL+GRVGRG   +   +++    PL+  +  RL  +   ++   G  IA +DL+ R  
Sbjct: 899 LYQLKGRVGRGRLQAYAYIMFPETQPLTDEARRRLEAIYEHQELGSGMRIAMKDLEIRGA 958

Query: 631 GEILGIKQSG 640
           G ++G +Q G
Sbjct: 959 GSLVGAEQHG 968


>gi|228956495|ref|ZP_04118292.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228803185|gb|EEM50006.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 1183

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 621 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 680

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 681 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 740

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 741 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 800

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 801 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 857

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 858 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQYDVLVSTTIIETGVDIP 908

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 909 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 968

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 969 LGSGFKIAMRDLSIRGAGNLLGAEQHG 995


>gi|42779132|ref|NP_976379.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987]
 gi|206977924|ref|ZP_03238811.1| transcription-repair coupling factor [Bacillus cereus H3081.97]
 gi|217957629|ref|YP_002336171.1| transcription-repair coupling factor [Bacillus cereus AH187]
 gi|222093823|ref|YP_002527872.1| transcription-repair coupling factor [Bacillus cereus Q1]
 gi|229136900|ref|ZP_04265528.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26]
 gi|42735047|gb|AAS38987.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987]
 gi|206743830|gb|EDZ55250.1| transcription-repair coupling factor [Bacillus cereus H3081.97]
 gi|217067660|gb|ACJ81910.1| transcription-repair coupling factor [Bacillus cereus AH187]
 gi|221237870|gb|ACM10580.1| transcription-repair coupling factor [Bacillus cereus Q1]
 gi|228646565|gb|EEL02771.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26]
          Length = 1176

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|95930005|ref|ZP_01312745.1| transcription-repair coupling factor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133974|gb|EAT15633.1| transcription-repair coupling factor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 1158

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 214/379 (56%), Gaps = 17/379 (4%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q +AI+D+L+DM     M R++ GDVG GKT VA+ A   A     Q  ++ 
Sbjct: 614 FPYEETADQMAAIQDVLEDMQSGRPMDRLICGDVGYGKTEVAIRAAFKAALDSKQVAVVV 673

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QHY    +      + VE+I+     A +++ L+ +A GQ  ++IGTH L Q 
Sbjct: 674 PTTILARQHYATFLERFHGYPVHVEMISRFRSAADQKRVLKELAEGQVDVVIGTHRLLQR 733

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + +  L +V++DE+ RFGV  + +L +      +L ++ATPIPRTL +  +G  D+S I
Sbjct: 734 DVHFKDLGMVVIDEEQRFGVSHKERLKKMRAQVAMLTLSATPIPRTLNMGMIGMRDLSII 793

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVER 506
              P  R  I+T    + R D+ + R  ++  L  G + Y++  +++     +  ++ E 
Sbjct: 794 DTPPVDRLAIRTY---VTRFDDDLIRNAILRELQRGGQVYFVHNRVQ-----SIGAMAEF 845

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             +L     + IA+ HG+M++ + E VM  F  G   +L+A+T+IE G+D+  A+ II+ 
Sbjct: 846 LATLVPE--AKIAVGHGQMAEKELEKVMLGFIEGETNVLVASTIIENGLDIPRANTIIVN 903

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGL+QL+QLRGRVGR +      LL      L+K++  RL VL++  +   GF +A
Sbjct: 904 RADCFGLSQLYQLRGRVGRSKNRGYAYLLIPGEATLTKDARARLQVLQDLTELGAGFRVA 963

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G++LG +Q+G
Sbjct: 964 SHDLELRGAGDLLGGRQAG 982


>gi|324324043|gb|ADY19303.1| transcription-repair coupling factor [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 1176

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|319778049|ref|YP_004134479.1| dead/deah box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171768|gb|ADV15305.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 1129

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 153/435 (35%), Positives = 226/435 (51%), Gaps = 20/435 (4%)

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
           D L    + L  MR     EI  P   +  + A K     P++ T  Q +AI+ +L D+S
Sbjct: 552 DRLAKRLVGLAEMRSSQPAEIIKPSRADLARFAAKF----PYTETPDQAAAIRAVLDDLS 607

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
               M R++ GDVG GKT VAL A AAA   G Q  ++AP  +LA+QHYE   +    T 
Sbjct: 608 SGRTMNRLVCGDVGFGKTEVALRACAAAALCGKQVAVIAPTTVLARQHYETFSRRFAGTG 667

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + V  ++  +  A  + A E +  GQ  I++GT AL   S+ +  L L+++DE+HRFGV+
Sbjct: 668 LQVAHLSRMVGAAKAKAAKEGLRSGQVTIVVGTQALASRSVTFANLGLLVIDEEHRFGVK 727

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
            +L L   A   H L M+ATPIPRTL     G  D+S +   PA R+P++T++   +   
Sbjct: 728 LKLALRNMAPCLHTLSMSATPIPRTLQSALSGIQDVSVLNSPPAKRRPVRTILAAFDPA- 786

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            V   L      G +++++ P+IE     +   V ++ N L       +   HG M    
Sbjct: 787 SVRAALLREFHRGGQSFFVVPRIE-----DIGPVSDQLNRLVPEL--GVMTAHGEMKGRQ 839

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
            + VM  F +G   +L++T +IE G+DV  A+ II+   + FGLAQLHQLRGRVGRG   
Sbjct: 840 LDEVMVGFADGDGDILLSTDIIESGLDVPRANTIIVWRPDRFGLAQLHQLRGRVGRGAMQ 899

Query: 590 SSCILLYHP--PLSKNSYTRLS---VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           ++  LL  P   L+  +  RLS    L     G  I++ DL  R  G++ G  Q+G  K 
Sbjct: 900 AAAFLLTEPGVELADGTRARLSTMLALDRLGSGLAISQRDLDLRGAGDLFGEDQAGHMKL 959

Query: 645 LIAQPELHDSLLEIA 659
           +     L++ LLE A
Sbjct: 960 IGVG--LYEHLLERA 972


>gi|52145163|ref|YP_081665.1| transcription-repair coupling factor [Bacillus cereus E33L]
 gi|51978632|gb|AAU20182.1| transcription-repair coupling factor [Bacillus cereus E33L]
          Length = 1176

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|268318293|ref|YP_003292012.1| transcription-repair coupling factor [Rhodothermus marinus DSM
           4252]
 gi|262335827|gb|ACY49624.1| transcription-repair coupling factor [Rhodothermus marinus DSM
           4252]
          Length = 1112

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 206/380 (54%), Gaps = 21/380 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q +A + + +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 554 YEDTPDQAAAAEAVKRDMEQPVPMDRLVCGDVGFGKTEIAIRAAFKAVQDGKQVAVLVPT 613

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QHYE   +      + +E+++     A +R  L  +A G+  IIIGTH L    +
Sbjct: 614 TILADQHYETFTRRLAPYPVRIEVLSRFRSPARQRAVLRDLAAGKVDIIIGTHRLLSKDV 673

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           Q+  L L+I+DE+ RFGV  + +L Q       L +TATPIPRTL    +G  D+S I+ 
Sbjct: 674 QFKDLGLLIIDEEQRFGVAAKERLRQLRVEVDTLTLTATPIPRTLQFALMGARDLSIIST 733

Query: 451 KPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKE--SNFRSVVER 506
            P  R+PI T    I+  DE + R  ++  +S G + ++I  +++   E  +  +++V  
Sbjct: 734 PPPNRQPIVT---EIHTFDETLIRDAIRYEISRGGQVFFIHNRVQSIYEMAARLQAIVPD 790

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IA+ HG+M   + E VM  F      +L++T +IE G+D+ +A+ III 
Sbjct: 791 VR---------IAVAHGQMKPRELERVMHDFMARKYDVLVSTNIIESGLDIPNANTIIIN 841

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621
           +AE FGLA LHQLRGRVGR +  + C LL      L++ +  RL  ++   +   GF IA
Sbjct: 842 HAEQFGLADLHQLRGRVGRSDRKAFCYLLVPSIHGLTREARQRLQAIEEFSELGSGFSIA 901

Query: 622 EEDLKQRKEGEILGIKQSGM 641
             DL  R  G +LG +QSG 
Sbjct: 902 MRDLDIRGAGNLLGAEQSGF 921


>gi|157690837|ref|YP_001485299.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032]
 gi|157679595|gb|ABV60739.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032]
          Length = 1177

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 210/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  +I +I QDM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P
Sbjct: 621 PYQETDDQIRSIHEIKQDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQH++ I    Q+  + +  ++    +    + L+ + +G   ++IGTH L    
Sbjct: 681 TTILAQQHFDTIMDRFQDYPVKIAQLSRFRTRKETTETLKGLKNGTIDMVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 741 IVYKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTATPIPRTLHMSMLGVRDLSVIE 800

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K      +V 
Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVEDIERKADEISMLVP 857

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + ++  HG+MS+ + ESVM +F  G   +L++TT+IE G+D+ + + +I+
Sbjct: 858 ---------DAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDIPNVNTLIV 908

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE   GF I
Sbjct: 909 HDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFTELGSGFKI 968

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +Q G
Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988


>gi|170759697|ref|YP_001788879.1| transcription-repair coupling factor [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169406686|gb|ACA55097.1| transcription-repair coupling factor [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 1168

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 145/437 (33%), Positives = 232/437 (53%), Gaps = 35/437 (8%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EWT +  + + + +E+    + L  +R   K   G   + +    ++     P+  T  Q
Sbjct: 573 EWTKTKNKVKKSIEEIAEDLVKLYAIRATLK---GYKYSDDTVWQKQFEEEFPYEETPDQ 629

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI+DI +DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQH
Sbjct: 630 LLAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQH 689

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y   K+   +  I V++I+     + ++  ++ I  G   I+IGTH + Q  I++  L L
Sbjct: 690 YNNFKQRFSDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGL 749

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  DIS I   P  R P
Sbjct: 750 LIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYP 809

Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           ++T ++  N  D++I + +   +S G + Y++  ++E               S+HE  + 
Sbjct: 810 VQTYVVEYN--DQLIRDSILREISRGGQIYFVYNRVE---------------SIHEMASY 852

Query: 516 -------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                    + I HG+M + + E+V+  F      +LIATT+IE G+D+ + + +II +A
Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623
           +  GL+QL+QLRGRVGR   ++ C L Y     L++ +  RL  +K+ TE   GF IA +
Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G ++G  Q G
Sbjct: 973 DLEIRGAGNMMGSAQHG 989


>gi|85708435|ref|ZP_01039501.1| transcription-repair coupling factor [Erythrobacter sp. NAP1]
 gi|85689969|gb|EAQ29972.1| transcription-repair coupling factor [Erythrobacter sp. NAP1]
          Length = 1163

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 147/435 (33%), Positives = 236/435 (54%), Gaps = 26/435 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +AG++  +   +  KK        E     + +   P+  T  Q++AI D+L+D+     
Sbjct: 570 IAGELMKVAAERALKK--APRFEAEDASFNQFVDRFPWEETDDQDAAIADVLRDLESGKP 627

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VAL A   A  +G Q  ++AP  +LA+QHYE  K+  +   + + 
Sbjct: 628 MDRLVCGDVGFGKTEVALRAAFVAAMSGKQVAVVAPTTLLARQHYENFKQRFEGFPLKLG 687

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            ++  +      +  E +A+G   +++GTHA+   S ++  L LVIVDE+ RFGV  + K
Sbjct: 688 RLSRLVSSKEAAETREGLANGTVDLVVGTHAILSKSTEFKDLGLVIVDEEQRFGVTHKEK 747

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L Q     H+L +TATPIPRTL +   G  ++S I   P  R  ++T ++     D+++ 
Sbjct: 748 LKQLRADVHMLTLTATPIPRTLQMAMTGLRELSTIQTPPVDRLAVRTYVM---EWDDMVM 804

Query: 474 RLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI-IHGRMSDID 529
           R + +L E   G +++ + P+I +  +      VE +  LHE+     AI  HG+M   +
Sbjct: 805 R-EALLREHHRGGQSFIVVPRISDMAD------VEEW--LHENVPEVKAISAHGQMGAAE 855

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
            E  M +F +   ++L++TT++E G+D+  A+ III  A+ FGLAQL+QLRGRVGR +  
Sbjct: 856 IEQRMSAFYDRKYEVLLSTTIVESGLDLPSANTIIIHRADRFGLAQLYQLRGRVGRSKLR 915

Query: 590 SSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK- 643
           +   L Y     LS+ +  RL VL + +    GF +A  DL  R  G +LG +QSG  + 
Sbjct: 916 AYAYLTYEKDVQLSEVAEKRLKVLGDLDSLGAGFQLASHDLDIRGAGNLLGDEQSGHIRE 975

Query: 644 --FLIAQPELHDSLL 656
             F + Q  L D++L
Sbjct: 976 VGFELYQSMLEDAIL 990


>gi|254293942|ref|YP_003059965.1| transcription-repair coupling factor [Hirschia baltica ATCC 49814]
 gi|254042473|gb|ACT59268.1| transcription-repair coupling factor [Hirschia baltica ATCC 49814]
          Length = 1152

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/397 (34%), Positives = 217/397 (54%), Gaps = 17/397 (4%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q +AI+D L D++    M R++ GDVG GKT VAL     A  +G Q  I+A
Sbjct: 602 FPYEETDDQLNAIEDCLSDLASGKPMDRLVCGDVGFGKTEVALRTAFVAAMSGMQVAIIA 661

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LA+QHY   K+  +   I V  ++  +    +    E +A G A +++GTHA+   
Sbjct: 662 PTTLLARQHYRTFKERFEGWPIKVRQLSRFVSAKEQTTTREMLASGDADVVVGTHAVISK 721

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +++ +L L++VDE+ RFGV+ + ++ +     HVL ++ATPIPRTL L   G  D+S I
Sbjct: 722 QVKFKRLGLLVVDEEQRFGVKHKERMKEMKADIHVLTLSATPIPRTLQLALTGIRDLSII 781

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R  ++T  +  + +  V E L      G ++Y+I P++ +         +ERF 
Sbjct: 782 ATPPIDRLSVRTYTVEFDPV-TVREALLRERYRGGQSYFIAPRVSD------LPFLERF- 833

Query: 509 SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            L E     S    HG+M+    E +M+ F +G   +L+ATT++E G+D+  A+ I+I  
Sbjct: 834 -LREQVPEVSFLSAHGQMASGQLEDIMNDFYDGKADVLLATTIVESGLDIPRANTIVIHR 892

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A+ FGLAQL+QLRGRVGR +  +   +       LS+ +  RL VL++ +    GF++A 
Sbjct: 893 ADKFGLAQLYQLRGRVGRSKLRAYAYMTTKKDMVLSETAEKRLKVLQSLDSLGAGFMLAS 952

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            DL  R  G +LG  QSG  + +    EL+  +LE A
Sbjct: 953 HDLDMRGGGNLLGDAQSGHVREVGV--ELYQQMLEDA 987


>gi|330999600|ref|ZP_08323311.1| transcription-repair coupling factor [Parasutterella
           excrementihominis YIT 11859]
 gi|329574453|gb|EGG56023.1| transcription-repair coupling factor [Parasutterella
           excrementihominis YIT 11859]
          Length = 1157

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/377 (36%), Positives = 205/377 (54%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T+ Q +AI  + +DM     M R++ GDVG GKT VAL A   AV  G Q  ++ P 
Sbjct: 614 FEETEDQLAAINAVYRDMISDKPMDRLVCGDVGFGKTEVALRAAFMAVMGGKQVAVLCPT 673

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH +  +    N  + +  ++          ++E I +G   I++GTH L  D +
Sbjct: 674 TLLAEQHAQTFRDRFANWPVRIAELSRFRSSKEVNGSIEGIKNGTIDIVVGTHKLLSDKV 733

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           Q+  L LV++DE+HRFGV+Q+ +L    +   +L +TATPIPRTL ++  G  D S I  
Sbjct: 734 QFKDLGLVVIDEEHRFGVRQKEQLKSLRSEVDILTLTATPIPRTLSMSLEGIRDFSVIAT 793

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R  IKT    + R  + + R  V+  L  G + Y++  ++E  + +       R +
Sbjct: 794 APQKRLAIKTF---VQRESDSLIREAVLRELKRGGQVYFLHNEVETIENARM-----RLD 845

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L     + I + HG+M++ + E VM  F      +L+ TT+IE GID+ +A+ II+  A
Sbjct: 846 QLLPE--ARIGVAHGQMNERELERVMRDFYAQRTNVLLCTTIIETGIDIPNANTIIMHRA 903

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLAQLHQLRGRVGR    +   LL      ++KN+  RL  +K  E+   GF +A  
Sbjct: 904 DKFGLAQLHQLRGRVGRSHHQAYAYLLTPGEGAMTKNAEKRLEAIKEMEELGSGFYLAMH 963

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  GE+LG  QSG
Sbjct: 964 DLEIRGAGEVLGEHQSG 980


>gi|229074115|ref|ZP_04207162.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18]
 gi|229094775|ref|ZP_04225781.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29]
 gi|229113728|ref|ZP_04243164.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3]
 gi|228669725|gb|EEL25131.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3]
 gi|228688643|gb|EEL42515.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29]
 gi|228709009|gb|EEL61135.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18]
          Length = 1176

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T  Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETDDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + L+ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETLKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|294677347|ref|YP_003577962.1| transcription-repair coupling factor [Rhodobacter capsulatus SB
           1003]
 gi|294476167|gb|ADE85555.1| transcription-repair coupling factor [Rhodobacter capsulatus SB
           1003]
          Length = 1148

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/398 (34%), Positives = 231/398 (58%), Gaps = 25/398 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q +AI+D++ D++    M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 589 PYTETDDQMAAIEDVVTDLAAGRPMDRLVVGDVGFGKTEVAMRAAFVAASSGMQVAVIAP 648

Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             +LA+QH + FI+++ + T + V+ ++  +         + +A G   I+IGTHA+   
Sbjct: 649 TTLLARQHAKTFIERF-RGTPLTVKPLSRFVSAKEANATRDGLADGTVDIVIGTHAVLAK 707

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +++  L L+I+DE+  FGVQ + +L +  +  HVL +TATPIPRTL L+  G  D+S I
Sbjct: 708 GVKFRNLGLLIIDEEQHFGVQHKERLKEMRSEIHVLTLTATPIPRTLQLSLTGVRDLSII 767

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
              P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  E      VE
Sbjct: 768 GTPPVDRLAIRTY---VSEFDTVTIR-EALLREHYRGGQSFYVVPRISDLAE------VE 817

Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            F  L  H    S  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ ++
Sbjct: 818 DF--LRSHVPEVSFIVAHGQMAAGELDDRMNAFYDGKHDVLLATTIVESGLDIPTANTMV 875

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619
           +  A+ FGL+QL+Q+RGRVGR +  + C L   P  PL+  +  RL +L + ++   GF 
Sbjct: 876 VHRADMFGLSQLYQIRGRVGRSKLRAYCYLTTKPRLPLTPQATKRLRLLGSLDNLGAGFS 935

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +A +DL  R  G +LG +QSG  K +    EL+ ++LE
Sbjct: 936 LASQDLDLRGAGNLLGEEQSGHIKEV--GYELYQAMLE 971


>gi|225166092|ref|ZP_03727826.1| transcription-repair coupling factor [Opitutaceae bacterium TAV2]
 gi|224799663|gb|EEG18158.1| transcription-repair coupling factor [Opitutaceae bacterium TAV2]
          Length = 833

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 143/412 (34%), Positives = 216/412 (52%), Gaps = 19/412 (4%)

Query: 238 IALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           +A  L+R Q  +E   G   + +    Q+     PF+ T  Q  AI +   DM +   M 
Sbjct: 217 LAAELLRIQAAREAQPGHAFDPDNDWQQEFEAAFPFTETPDQLRAITETKADMERPRPMD 276

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++ GDVG GKT VA+ A   AV++G Q  ++ P  +LAQQH    ++      ++VE++
Sbjct: 277 RLICGDVGFGKTEVAIRAAFKAVQSGRQVALLVPTTVLAQQHLNTFRERMAGYPLVVEMV 336

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +    +    + L   A GQ  I++GTH +    + +  L LVI+DE+ RFGVQ + +L 
Sbjct: 337 SRFRTRGEITRILAATAAGQVDILVGTHRILNKDVVFRDLGLVIIDEEQRFGVQHKERLK 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIE 473
                  VL M+ATPIPRTL +   G  D+S I   P  R PI+T+   +   DE  V +
Sbjct: 397 AMRATVDVLSMSATPIPRTLYMAMTGARDMSVIETPPTNRHPIQTI---VKTYDEKLVTD 453

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            ++  LS G + +++  +++         V  R   L       IA  HG+MS+   E +
Sbjct: 454 AIRAELSRGGQVFYLHNRVQ-----TIDLVAARLAQLLPDV--KIATGHGQMSEHALERM 506

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F  G  ++L+ TT+IE G+D+ + + IIIE A+ FGL+QL+QLRGRVGR +  +   
Sbjct: 507 MTEFVAGDYQVLVCTTIIETGLDIPNCNTIIIEGADRFGLSQLYQLRGRVGRFKHQAYAY 566

Query: 594 LLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           LL   H  L   +  RL+ L+       GF IA  DL+ R  G +LG +QSG
Sbjct: 567 LLLHRHTRLMDVARERLNALRTHNQLGAGFRIAMRDLELRGAGNLLGPQQSG 618


>gi|304319738|ref|YP_003853381.1| transcription-repair coupling factor [Parvularcula bermudensis
           HTCC2503]
 gi|303298641|gb|ADM08240.1| transcription-repair coupling factor [Parvularcula bermudensis
           HTCC2503]
          Length = 1163

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 141/400 (35%), Positives = 225/400 (56%), Gaps = 23/400 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P++ T  Q +AI D++ D+S+   M R++ GDVG GKT VAL A   A  +G Q  ++A
Sbjct: 613 FPYTETDDQLNAIDDVISDLSRGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGRQVAVIA 672

Query: 329 PIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P  +L +QH+  F++++ Q   + +  ++  +         E I +G   I+IGTHAL  
Sbjct: 673 PTTLLVRQHFRGFVERF-QGFPVKIRQLSRFVSAKEASATREGIKNGDVDIVIGTHALLS 731

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             + +  L L+I+DE+  FGV+ + +L +     HVL +TATPIPRTL L+  G  D+S 
Sbjct: 732 KHVAFRDLGLLIIDEEQHFGVKHKERLKEFRGDTHVLTLTATPIPRTLQLSMAGIRDLSL 791

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVV 504
           I   P  R  ++T I P    D V+ R + +L E   G +++++ P++     S+  +V 
Sbjct: 792 IATPPVDRLAVRTTIGP---FDPVVAR-ETLLREHYRGGQSFYVVPRL-----SDIDTVA 842

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +     H+       I HG+MS  + E VM+ F +G   +L+ATT+IE GIDV  A+ ++
Sbjct: 843 DFLR--HQVPEIKFEIGHGQMSATELEDVMNGFYDGKFDVLLATTIIESGIDVPTANTLV 900

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619
           +  A+ FGLAQL+Q+RGRVGR ++ +   L   P   +++ +  RL VL++ +    GF 
Sbjct: 901 VHRADMFGLAQLYQIRGRVGRSKQRAYAYLTTSPRKKMTEGAEKRLKVLQSLDTLGAGFT 960

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           +A  DL  R  G +LG +QSG  K +    EL+  +LE A
Sbjct: 961 LASHDLDIRGAGNLLGEEQSGNVKDVGV--ELYQHMLEEA 998


>gi|270290199|ref|ZP_06196425.1| transcription-repair coupling factor [Pediococcus acidilactici 7_4]
 gi|270281736|gb|EFA27568.1| transcription-repair coupling factor [Pediococcus acidilactici 7_4]
          Length = 1165

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/429 (31%), Positives = 234/429 (54%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    +   +  E +A  +  L  +++ +K    P + + ++  +   + P++ T  Q 
Sbjct: 567 DWAKTKQHVASKIEDIADDLIELYAKREAEKGFAFPPDDDLQL--QFENDFPYTETPDQL 624

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK++ +DM +   M R+L GDVG GKT VAL A   A+E G Q  I+ P  ILAQQH+
Sbjct: 625 RSIKEVKEDMEKPRPMDRLLVGDVGYGKTEVALRAAFKAIEGGKQVAILVPTTILAQQHF 684

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +     +  I   +++     A  ++AL  +  G   I++GTH L    + +  L L+
Sbjct: 685 DTMNDRFGDYPITTAMLSRFQTNAQIKEALAGLKDGTIDIVVGTHRLLSKDVHFKDLGLL 744

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + ++    +   VL +TATPIPRTL ++ +G  D+S I   P  R PI
Sbjct: 745 VIDEEQRFGVKHKERIKALRSQVDVLTLTATPIPRTLNMSMIGVRDLSVIETPPTNRYPI 804

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++  N   I E I  ++ +  +G + +++  +++     +   VV +  +L     +
Sbjct: 805 QTYVVEENAGIIREGI--MREIRRDG-QVFFLHNRVQ-----DIEKVVAQIEALVPE--A 854

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A IHG+M++   E ++  F  G   +L+ TT+IE GID+ +A+ + +ENA+H GL+QL
Sbjct: 855 RVAYIHGQMTEKQLEDILFDFIEGEYDVLVTTTIIETGIDIPNANTLFVENADHMGLSQL 914

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY     L++    RL  +K+ TE   GF IA  DL  R  G
Sbjct: 915 YQLRGRIGRSSRVAYAYFLYQKDRVLTELGEKRLEAIKDFTELGSGFKIAMRDLSIRGAG 974

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 975 NLLGKQQHG 983


>gi|325125148|gb|ADY84478.1| Transcriptional repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 1163

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 143/435 (32%), Positives = 227/435 (52%), Gaps = 24/435 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    +   A  E +A  +  L  +++ +K  G   + +G          P+ PT  Q 
Sbjct: 557 EWAKTKKRVAARVEDIADDLIELYAKREAEK--GFAFSPDGSDQAAFEAAFPYEPTPDQL 614

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A  +I  DM +   M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQHY
Sbjct: 615 RATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHY 674

Query: 339 EFIKKYTQNTQII---VEIITGN--MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           + IK   +   +    VEI + +    QA  +K +  +  G   +++GTH +    +Q+ 
Sbjct: 675 QTIKDRFKGFPVKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQFK 734

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV  + KL Q  T   VL +TATPIPRTL ++ +G  D+S +   P 
Sbjct: 735 DLGLLIIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQ 794

Query: 454 GRKPIKTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            R PI+T ++      + E  +R    +  G + +++  ++ + +E+     V R   L 
Sbjct: 795 NRYPIQTYVLEQLPGTVKEACQR---EMQRGGQVFYLHNRVGDIEET-----VARLEQLL 846

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               + IA  HG+MS+   E ++  F +    +L+ TT+IE GID+ + + +IIE+A+H+
Sbjct: 847 PE--ARIAYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHY 904

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLK 626
           GL+QL+QLRGR+GR   ++    LY P   L++    RL  +++  +   GF IA  DL 
Sbjct: 905 GLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDLS 964

Query: 627 QRKEGEILGIKQSGM 641
            R  G +LG +Q G 
Sbjct: 965 IRGAGNMLGAQQHGF 979


>gi|300868792|ref|ZP_07113400.1| Transcription-repair-coupling factor [Oscillatoria sp. PCC 6506]
 gi|300333202|emb|CBN58592.1| Transcription-repair-coupling factor [Oscillatoria sp. PCC 6506]
          Length = 1226

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/410 (32%), Positives = 226/410 (55%), Gaps = 17/410 (4%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            + LL +  +  +++G     +    Q++  + P+ PT  Q  A +D+ +DM     M R+
Sbjct: 645  VDLLNLYAKRAQQVGFAFPPDMPWQQELEDSFPYQPTPDQLKATQDVKRDMEGDRPMDRL 704

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GDVG GKT VA+ A+  A+ AG Q  ++AP  IL QQHY  +K+      I V ++  
Sbjct: 705  VCGDVGFGKTEVAIRAIFKAITAGKQVAMLAPTTILTQQHYHTLKERFAPYPIEVGLLNR 764

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               +  RR+   R+A G+  +++GT ++    +++  L L++VDE+ RFGV+Q+  +   
Sbjct: 765  FRTETERRELQRRLASGELDVVVGTQSILSKGVKFKDLGLMVVDEEQRFGVKQKEAIKAL 824

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LK 476
             T   VL +TATPIPRTL ++  G  ++S I   P  R+PI+T +   +   EV+   ++
Sbjct: 825  KTMVDVLTLTATPIPRTLYMSLSGIREMSIIATPPPTRRPIQTHLAAYD--PEVVRTAIR 882

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              L  G + +++ P+IE         +  +   +     + IAI HG+M   + E++M +
Sbjct: 883  QELDRGGQVFYVVPRIE-----GIDDLAAQLGVMVP--GAKIAIAHGQMDASELEAIMLA 935

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F      +L+ TT+IE G+D+   + I+IE+A+ FGLAQL+QLRGRVGR   + +   L+
Sbjct: 936  FSAADFDILVCTTIIESGLDIPRVNTILIEDAQRFGLAQLYQLRGRVGRA-GVQAHAWLF 994

Query: 597  HPP---LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
            +P    L+  +  RL  ++       G+ +A  DL+ R  G+ILG +QSG
Sbjct: 995  YPNQNRLTDEARQRLRAIQEFAQLGSGYQLAIRDLEIRGAGDILGAEQSG 1044


>gi|229142859|ref|ZP_04271302.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24]
 gi|228640622|gb|EEK97009.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24]
          Length = 1183

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 621 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 680

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 681 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 740

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 741 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 800

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 801 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 857

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 858 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 908

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 909 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 968

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 969 LGSGFKIAMRDLSIRGAGNLLGAEQHG 995


>gi|281420665|ref|ZP_06251664.1| transcription-repair coupling factor [Prevotella copri DSM 18205]
 gi|281405438|gb|EFB36118.1| transcription-repair coupling factor [Prevotella copri DSM 18205]
          Length = 1137

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/408 (31%), Positives = 219/408 (53%), Gaps = 15/408 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  +   +  +  +  T  Q  A +++ +DM     M R++ 
Sbjct: 537 LIKLYAQRRREKGFAFSADNYLQHTLEASFLYEDTPDQNKATQEVKKDMESGRPMDRLVC 596

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   A     Q  ++ P  +LA QHY+  KK  +   + V+ ++   
Sbjct: 597 GDVGFGKTEVAIRAAFKAACDSKQVAVLVPTTVLAFQHYQTFKKRLEGMPVRVDYLSRAR 656

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                R+ L+ +  G+  I+IGTH L   +++++ L L+++DE+ +FGV  + KL Q   
Sbjct: 657 TTKETREVLDALKEGKIDILIGTHKLISKTVKWHDLGLLVIDEEQKFGVSTKEKLRQLKV 716

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L M+ATPIPRTL  + +G  D+S +   P  R PI T ++  +  + + + +   +
Sbjct: 717 NVDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIHTELVTFSS-EVICDAINFEM 775

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFK 538
           S   + Y++C +I +  E   + ++E+      H     +AI HG+M   D E ++  F 
Sbjct: 776 SRNGQVYFVCDRISKLPE--LKMLIEK------HIPDCRVAIGHGQMKPEDLEKIIMGFI 827

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +L++TT++E GID+ +A+ II+ +A HFGL+ LHQ+RGRVGR  + + C L+  P
Sbjct: 828 NYDYDVLLSTTIVENGIDISNANTIIVSDAHHFGLSDLHQMRGRVGRSNKKAFCYLMAPP 887

Query: 599 --PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
              L+  +  RL  L+   +   GF +A +DL  R  G +LG +QSG 
Sbjct: 888 KSALTPEARRRLEALETFSELGSGFNLAMQDLDIRGAGNLLGSEQSGF 935


>gi|283779708|ref|YP_003370463.1| transcription-repair coupling factor [Pirellula staleyi DSM 6068]
 gi|283438161|gb|ADB16603.1| transcription-repair coupling factor [Pirellula staleyi DSM 6068]
          Length = 1087

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 139/397 (35%), Positives = 220/397 (55%), Gaps = 19/397 (4%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           GI  + + +  ++   + PF  T  Q ++I  I  DM +   M R+L GDVG GKT VA+
Sbjct: 532 GIAFSADSEWQKEFDNSFPFQETVDQLTSIASIKADMQRARPMDRLLCGDVGFGKTEVAM 591

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            A   AV+ G Q  ++ P  ILA+QHY  FI++  +    I ++      Q   R+AL+ 
Sbjct: 592 RAAFKAVDNGYQVAVLVPTTILAEQHYRSFIERMAEFPCDIAKLSRFCTSQ-EEREALKG 650

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           I  G+  I++GTH L    + ++ L LVI+DE+ RFGV  + +L        VL ++ATP
Sbjct: 651 IKSGKVDIVVGTHRLASQDVDFHNLGLVIIDEEQRFGVDVKERLKALKATVDVLTLSATP 710

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWI 488
           IPRTL ++ +G  DIS +   P  R P++T    + R +  + R  V+  L+ G + Y++
Sbjct: 711 IPRTLHMSLVGVRDISNLESPPEDRVPVET---SVKRWNNDLIRTAVLRELNRGGQIYFV 767

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             ++     ++   +  R N +     +S+ I HG+M++ + E VM  F  G   LL+AT
Sbjct: 768 HNRV-----NDIEIIARRLNQIVPE--ASLRIGHGQMNETELEQVMVDFVAGKFDLLLAT 820

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYT 606
           T++E G+D+ +A+ I I  AE +GLA LHQLRGRVGR +  + C LL   +  ++ N+  
Sbjct: 821 TIVESGLDIPNANTIFINEAERYGLADLHQLRGRVGRYKNRAHCYLLIDSNKSITPNAAR 880

Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           RL  ++   +   GF I+  DL+ R  G +LG +QSG
Sbjct: 881 RLRAIEEFSEMGAGFQISMRDLEIRGAGNLLGTQQSG 917


>gi|227499516|ref|ZP_03929623.1| transcription-repair coupling factor [Anaerococcus tetradius ATCC
           35098]
 gi|227218395|gb|EEI83646.1| transcription-repair coupling factor [Anaerococcus tetradius ATCC
           35098]
          Length = 1170

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 143/429 (33%), Positives = 230/429 (53%), Gaps = 21/429 (4%)

Query: 220 W-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           W  + AR + A DE+    + L   R + K   G   + +     +   + P+  T SQ 
Sbjct: 576 WQKAKARAKRAVDEIADDLVELYAKRSKIK---GHAFSSDTPWQSEFENSFPYEETYSQI 632

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I  DM     M R+L GDVG GKT VA+ A   A+  G Q   + P  ILA QHY
Sbjct: 633 RSIDEIKNDMESDKPMDRLLCGDVGFGKTEVAIRAAFKAIMDGFQVAFLVPTTILANQHY 692

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E IKK  +   + VE+++   P+A     ++ +  G+  +I+GTH L    + Y  L L+
Sbjct: 693 ETIKKRFEKFPVHVEVLSRFNPKAKNNLIVKELKAGKVDLIVGTHRLLSKDVGYKNLGLL 752

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + KL +  ++  VL ++ATPIPRTL ++  G  D+S + E P  R P+
Sbjct: 753 IIDEEQRFGVKHKEKLKELKSSLDVLTLSATPIPRTLQMSLSGIRDLSTLDEAPEERMPV 812

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            + +I  +   I + IER    L+   + Y++  +I     ++   + ++   L     +
Sbjct: 813 NSYVIEYDSGIIKQAIER---ELNRNGQVYFVYNRI-----NDIEILYKQIQDLVPE--A 862

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           +I+IIHGR+S    E +M  F +G   +L++TT+IE G+D+ + + +I+ +A+  GL QL
Sbjct: 863 NISIIHGRISPKQIEEIMLDFIDGKIDILLSTTIIETGMDIANVNTMIVYDADTMGLGQL 922

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QL+GR+GR    S     Y     LS+ S  RL  +++  D   G+ IA +DL+ R  G
Sbjct: 923 YQLKGRIGRSNRSSYAYFTYRTGKVLSEISEKRLKSIRDFSDFGSGYKIAMKDLELRGAG 982

Query: 632 EILGIKQSG 640
            +LG  QSG
Sbjct: 983 NLLGESQSG 991


>gi|228919004|ref|ZP_04082384.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228840653|gb|EEM85914.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 1176

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|304385533|ref|ZP_07367877.1| transcription-repair coupling factor [Pediococcus acidilactici DSM
           20284]
 gi|304328037|gb|EFL95259.1| transcription-repair coupling factor [Pediococcus acidilactici DSM
           20284]
          Length = 1165

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/429 (31%), Positives = 234/429 (54%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    +   +  E +A  +  L  +++ +K    P + + ++  +   + P++ T  Q 
Sbjct: 567 DWAKTKQHVASKIEDIADDLIELYAKREAEKGFAFPPDDDLQL--QFENDFPYTETPDQL 624

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK++ +DM +   M R+L GDVG GKT VAL A   A+E G Q  I+ P  ILAQQH+
Sbjct: 625 RSIKEVKEDMEKPRPMDRLLVGDVGYGKTEVALRAAFKAIEGGKQVAILVPTTILAQQHF 684

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +     +  I   +++     A  ++AL  +  G   I++GTH L    + +  L L+
Sbjct: 685 DTMNDRFGDYPITTAMLSRFQTNAQIKEALAGLEDGTIDIVVGTHRLLSKDVHFKDLGLL 744

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + ++    +   VL +TATPIPRTL ++ +G  D+S I   P  R PI
Sbjct: 745 VIDEEQRFGVKHKERIKALRSQVDVLTLTATPIPRTLNMSMIGVRDLSVIETPPTNRYPI 804

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++  N   I E I  ++ +  +G + +++  +++     +   VV +  +L     +
Sbjct: 805 QTYVVEENAGIIREGI--MREIRRDG-QVFFLHNRVQ-----DIEKVVAQIEALVPE--A 854

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A IHG+M++   E ++  F  G   +L+ TT+IE GID+ +A+ + +ENA+H GL+QL
Sbjct: 855 RVAYIHGQMTEKQLEDILFDFIEGEYDVLVTTTIIETGIDIPNANTLFVENADHMGLSQL 914

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY     L++    RL  +K+ TE   GF IA  DL  R  G
Sbjct: 915 YQLRGRIGRSSRVAYAYFLYQKDRVLTELGEKRLEAIKDFTELGSGFKIAMRDLSIRGAG 974

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 975 NLLGKQQHG 983


>gi|257893212|ref|ZP_05672865.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,408]
 gi|257829591|gb|EEV56198.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,408]
          Length = 272

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/240 (42%), Positives = 168/240 (70%), Gaps = 3/240 (1%)

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  +  L+ G + 
Sbjct: 1   MTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKELARGHQM 60

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK+   +
Sbjct: 61  YVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFKDNQMQ 120

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P  ++ 
Sbjct: 121 ILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANPK-NEL 179

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F IA      ++LE+AR++A
Sbjct: 180 GVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEVAREEA 239


>gi|52078550|ref|YP_077341.1| transcription-repair coupling factor [Bacillus licheniformis ATCC
           14580]
 gi|52783912|ref|YP_089741.1| hypothetical protein BLi00068 [Bacillus licheniformis ATCC 14580]
 gi|52001761|gb|AAU21703.1| transcription-repair coupling factor [Bacillus licheniformis ATCC
           14580]
 gi|52346414|gb|AAU39048.1| Mfd [Bacillus licheniformis ATCC 14580]
          Length = 1177

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/380 (35%), Positives = 212/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I +I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  I+ P
Sbjct: 621 PYQETEDQLRSIHEIKRDMEKERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVAILVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE I +  Q+  I + +++    +    + ++ + +G   I+IGTH L    
Sbjct: 681 TTILAQQHYETILERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y  L L+I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKRIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K      +V 
Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVEDIERKAEEISMLVP 857

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +   HG+M++ + ESVM +F  G   +L++TT+IE G+D+ + + +I+
Sbjct: 858 ---------DAKVTYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIV 908

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            +A+  GL+QL+QLRGRVGR   ++     Y     L++ +  RL  +K  TE   GF I
Sbjct: 909 FDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKI 968

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +Q G
Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988


>gi|319648579|ref|ZP_08002793.1| mfd protein [Bacillus sp. BT1B_CT2]
 gi|317389346|gb|EFV70159.1| mfd protein [Bacillus sp. BT1B_CT2]
          Length = 1177

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/380 (35%), Positives = 212/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I +I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  I+ P
Sbjct: 621 PYQETEDQLRSIHEIKRDMEKERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVAILVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE I +  Q+  I + +++    +    + ++ + +G   I+IGTH L    
Sbjct: 681 TTILAQQHYETILERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y  L L+I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKRIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K      +V 
Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVEDIERKAEEISMLVP 857

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +   HG+M++ + ESVM +F  G   +L++TT+IE G+D+ + + +I+
Sbjct: 858 ---------DAKVTYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIV 908

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            +A+  GL+QL+QLRGRVGR   ++     Y     L++ +  RL  +K  TE   GF I
Sbjct: 909 FDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKI 968

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +Q G
Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988


>gi|229067818|ref|ZP_04201136.1| Transcription-repair-coupling factor [Bacillus cereus F65185]
 gi|228715302|gb|EEL67160.1| Transcription-repair-coupling factor [Bacillus cereus F65185]
          Length = 1176

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|229077333|ref|ZP_04210009.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-2]
 gi|228705971|gb|EEL58283.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-2]
          Length = 968

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 406 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 465

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 466 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 525

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 526 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 585

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 586 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 642

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 643 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 693

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 694 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 753

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 754 LGSGFKIAMRDLSIRGAGNLLGAEQHG 780


>gi|229100846|ref|ZP_04231656.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-28]
 gi|228682572|gb|EEL36639.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-28]
          Length = 621

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T  Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 59  QEFESSFPYQETDDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 118

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + L+ +  G   I+IGT
Sbjct: 119 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETLKGLKDGTVDIVIGT 178

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 179 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 238

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 239 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 295

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 296 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 346

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 347 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTE 406

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 407 LGSGFKIAMRDLSIRGAGNLLGAEQHG 433


>gi|154492199|ref|ZP_02031825.1| hypothetical protein PARMER_01833 [Parabacteroides merdae ATCC
           43184]
 gi|154087424|gb|EDN86469.1| hypothetical protein PARMER_01833 [Parabacteroides merdae ATCC
           43184]
          Length = 1167

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 142/408 (34%), Positives = 217/408 (53%), Gaps = 15/408 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+L+  + K+E G   + +  +  ++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 571 LILLYSKRKQEKGFAYSPDSFMQHELEASFIYEDTPDQMKATADVKADMENDRPMDRLIC 630

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+   +  ++    +E I+   
Sbjct: 631 GDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQTFSERLKDFPCRIEYISRAR 690

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                R+ L+ +  G  +IIIGTH +    + +  L L+I+DE+ +FGV  + KL Q   
Sbjct: 691 TAKEIRETLKDLKEGNINIIIGTHRIVGKDVTFKDLGLLIIDEEQKFGVSVKEKLRQLKA 750

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L MTATPIPRTL  + +G  D+S IT  P  R P++T +   N  D + E +   +
Sbjct: 751 NVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEVERFNP-DIIREAINFEM 809

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S   + ++I  +I+   E    ++V+R     E   + IA+ HG+M     E ++  F N
Sbjct: 810 SRNGQVFFINNRIQNIYE--MEALVKR-----EVPDARIAVGHGQMEPEKLEKIILDFVN 862

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +LIAT+++E GIDV +A+ III NA+ FGL+ LHQLRGRVGR    + C LL  PP
Sbjct: 863 YEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQLRGRVGRSNRKAFCYLL-SPP 921

Query: 600 LS---KNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           LS   + +  RL  ++N  +   G  IA +DL  R  G +LG +QSG 
Sbjct: 922 LSSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNMLGAEQSGF 969


>gi|229039959|ref|ZP_04189723.1| Transcription-repair-coupling factor [Bacillus cereus AH676]
 gi|229107740|ref|ZP_04237377.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15]
 gi|296500886|ref|YP_003662586.1| transcription-repair coupling factor [Bacillus thuringiensis
           BMB171]
 gi|228675713|gb|EEL30920.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15]
 gi|228727367|gb|EEL78560.1| Transcription-repair-coupling factor [Bacillus cereus AH676]
 gi|296321938|gb|ADH04866.1| transcription-repair coupling factor [Bacillus thuringiensis
           BMB171]
          Length = 1176

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|319441663|ref|ZP_07990819.1| transcription-repair coupling factor [Corynebacterium variabile DSM
            44702]
          Length = 1231

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/430 (31%), Positives = 226/430 (52%), Gaps = 21/430 (4%)

Query: 219  EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W T+  + R A  E+ A  + L   R+      G   + + +  +++    PF+ T+ Q
Sbjct: 613  DWKTAKKKARGAVREIAAELVQLYAARQAAP---GFAFDPDNQWTRQMEEAFPFTETEDQ 669

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +AI+ +  DM +   M R++ GDVG GKT VA+ A   AV++G Q  ++ P  +LAQQH
Sbjct: 670  YNAIEAVKDDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQH 729

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y       Q+    +  ++        ++ L  +A G   I++GTH L    +Q+  L L
Sbjct: 730  YRTFVDRMQDFPTTIRELSRFTSGRESKETLAGMADGTVDIVVGTHRLLATGVQWKNLGL 789

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VIVDE+ RFGV+ +  +T   T   VL M+ATPIPRTL ++  G  ++S I   P  R P
Sbjct: 790  VIVDEEQRFGVEHKEHITSLRTHVDVLTMSATPIPRTLEMSMTGIREMSTILTPPEDRHP 849

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
            + T +   +         + +L +G + +++  +++  E   ++ R +V           
Sbjct: 850  VLTYVGAQDDRHVAAAVRRELLRDG-QVFYVHNRVKSIEDAAAHIRELVPE--------- 899

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + + + HG+MS+   E+ +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+Q
Sbjct: 900  ARVVVAHGQMSEEQLETTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQ 959

Query: 576  LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
            LHQLRGRVGR  E +     Y     L++ SY RL  +    D   G  +A +DL+ R  
Sbjct: 960  LHQLRGRVGRSRERAYAYFFYPKGEMLTETSYDRLRTIAENNDLGAGMAVAMKDLEMRGA 1019

Query: 631  GEILGIKQSG 640
            G +LG +QSG
Sbjct: 1020 GNVLGAEQSG 1029


>gi|238022627|ref|ZP_04603053.1| hypothetical protein GCWU000324_02536 [Kingella oralis ATCC 51147]
 gi|237865830|gb|EEP66966.1| hypothetical protein GCWU000324_02536 [Kingella oralis ATCC 51147]
          Length = 1156

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 147/419 (35%), Positives = 227/419 (54%), Gaps = 15/419 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T+ Q +AI  ++ D++Q   M R++ GDVG GKT VAL A   AV  G Q  ++AP 
Sbjct: 611  YEETEDQAAAIAAVIADLTQARPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPT 670

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +L +QH +       +  + V  ++        R AL  +A G   I+IGTH L QD I
Sbjct: 671  TLLVEQHAQNFADRFADFPVKVAQLSRFNSSKETRAALAGMADGTVDIVIGTHKLVQDDI 730

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L LVI+DE+HRFGV+Q+ +L +      +L +TATPIPRTL +   G  D S IT 
Sbjct: 731  SFKNLGLVIIDEEHRFGVRQKEQLKKLRANVDILTLTATPIPRTLSMALEGLRDFSLITT 790

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P+ R  +KT + P +    V E +   L  G + +++  +++        ++ ER  +L
Sbjct: 791  APSRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVD-----TIENMRERLETL 844

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+ III  A+ 
Sbjct: 845  LPE--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADK 902

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            FG+AQLHQLRGRVGR    +   LL    +SK++  RL  +   ++   GF +A +DL+ 
Sbjct: 903  FGIAQLHQLRGRVGRSHHQAYAYLLTPEYISKDAEKRLDAIAAADELGAGFSLAMQDLEI 962

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G +  I L+
Sbjct: 963  RGAGEILGEGQSG--EMVQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLGVTTEIKLH 1017


>gi|30018324|ref|NP_829955.1| transcription-repair coupling factor [Bacillus cereus ATCC 14579]
 gi|229125571|ref|ZP_04254604.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4]
 gi|29893864|gb|AAP07156.1| Transcription-repair coupling factor [Bacillus cereus ATCC 14579]
 gi|228657888|gb|EEL13693.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4]
          Length = 1176

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|149914914|ref|ZP_01903443.1| transcription-repair coupling factor [Roseobacter sp. AzwK-3b]
 gi|149811102|gb|EDM70939.1| transcription-repair coupling factor [Roseobacter sp. AzwK-3b]
          Length = 1155

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 143/399 (35%), Positives = 225/399 (56%), Gaps = 23/399 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q  AI+D+L D+     M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 594 PYTETDDQLRAIEDVLADLDAGRPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVVAP 653

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+   +  +   + V  ++  + Q       E +A G   I++GTHAL   +
Sbjct: 654 TTLLARQHYQSFAERFRGFPVTVRPLSRFVSQRDANLTREGLASGTVDIVVGTHALLAKN 713

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+++DE+ RFGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 714 IRFKNLGLLVIDEEQRFGVAHKERLKQLRSDVHVLTLTATPIPRTLQLSLSGVRDLSIIG 773

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P+I++  E      +E 
Sbjct: 774 TPPVDRLSIRTY---VSEFDPVTIR-EALLREHYRGGQSFFVVPRIDDLPE------IEA 823

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L E     S  I HG+M+  D +  M++F +G   +L+ATT++E G+D+  A+ +II
Sbjct: 824 F--LSEQVPEVSYVIAHGQMAARDLDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMII 881

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
             A+ FGL+QL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +
Sbjct: 882 HRADMFGLSQLYQIRGRVGRSKTRAYAYLTTRPRARLTPAAEKRLRVLGSLDTLGAGFTL 941

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           A +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 942 ASQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 978


>gi|229188339|ref|ZP_04315388.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876]
 gi|228595138|gb|EEK52908.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876]
          Length = 1176

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|305665487|ref|YP_003861774.1| transcription-repair coupling factor [Maribacter sp. HTCC2170]
 gi|88710243|gb|EAR02475.1| transcription-repair coupling factor [Maribacter sp. HTCC2170]
          Length = 1172

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 142/414 (34%), Positives = 228/414 (55%), Gaps = 19/414 (4%)

Query: 237 QIALLLMRKQFKK--EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           QIA  L++   K+  E G   + +  +  ++  +  +  T  Q  A +D+ +DM  +  M
Sbjct: 570 QIAFDLIKVYAKRRLEKGFQYDPDSYLQLELEASFIYEDTPDQGKATEDVKKDMESERPM 629

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VA+ A   AV+ G Q  I+ P  ILA QH+    +  +   + V+ 
Sbjct: 630 DRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAILVPTTILAYQHHRTFSERLKELPVSVDY 689

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +        +R+ LER+ +G+  IIIGTH L   ++++  L L+IVDE+ +FGV  + KL
Sbjct: 690 LNRFRTAKEKRETLERLENGKVDIIIGTHQLVNKNVKFKDLGLLIVDEEQKFGVSVKDKL 749

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-E 473
                   VL +TATPIPRTL  + +   D+S I   P  R PI++ +I  N  +E+I +
Sbjct: 750 KSIKENVDVLTLTATPIPRTLQFSLMAARDLSVINTPPPNRYPIESNVIRFN--EEIIRD 807

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            +   +  G + ++I  +IE  KE     +++R         + I I HG+      E++
Sbjct: 808 AVSYEIQRGGQIFFIHNRIENIKE--VAGMLQRLVP-----DAKIGIGHGQKDGKKLEAL 860

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +F NG   +L++TT++E G+DV +A+ I I NA +FGL+ LHQ+RGRVGR  + + C 
Sbjct: 861 MLAFMNGEFDVLVSTTIVESGLDVTNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCY 920

Query: 594 LLYHPP---LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641
            +  PP   ++  +  R+  L+  TE   GF IA +DL+ R  G++LG +QSG 
Sbjct: 921 FI-TPPYEVMTNEARKRIQALEQFTELGSGFNIAMKDLEIRGAGDLLGGEQSGF 973


>gi|229027900|ref|ZP_04184055.1| Transcription-repair-coupling factor [Bacillus cereus AH1271]
 gi|228733414|gb|EEL84241.1| Transcription-repair-coupling factor [Bacillus cereus AH1271]
          Length = 1176

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|206972595|ref|ZP_03233538.1| transcription-repair coupling factor [Bacillus cereus AH1134]
 gi|228950602|ref|ZP_04112737.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229176654|ref|ZP_04304059.1| Transcription-repair-coupling factor [Bacillus cereus 172560W]
 gi|206732497|gb|EDZ49676.1| transcription-repair coupling factor [Bacillus cereus AH1134]
 gi|228606821|gb|EEK64237.1| Transcription-repair-coupling factor [Bacillus cereus 172560W]
 gi|228809077|gb|EEM55561.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 1176

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|283138935|gb|ADB12538.1| transcription-repair coupling factor [uncultured bacterium 9F08]
          Length = 1155

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 209/379 (55%), Gaps = 17/379 (4%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T  Q+ AI  +L DM  +  M R++ GDVG GKT VA+ A   AV  G Q  ++ 
Sbjct: 607 FPFEETPDQQDAIDAVLADMRAEQPMDRLICGDVGFGKTEVAMRAAFVAVMGGRQVAVLV 666

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LA+QH + ++    +  + +E ++       +++ L+ +  G   I+IGTH L Q+
Sbjct: 667 PTTLLAEQHTQNLRDRFADWPVRIESLSRFRSSKEQQQVLKGLEEGSVDIVIGTHKLLQE 726

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            I+Y +L +VI+DE+HRFGV+Q+ +         VL +TATPIPRTL +   G  ++S I
Sbjct: 727 GIRYKRLGMVIIDEEHRFGVRQKERFKALRAEVDVLTLTATPIPRTLNMAMGGIRELSII 786

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              PA R  +KT +   N  + V E     +  G + Y++  +++          +E+ +
Sbjct: 787 ASPPARRLAVKTFVHEWN-PELVKEACLREVRRGGQVYFLHNEVD---------TIEKIS 836

Query: 509 SLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              E     +SI + HG+M + + E VM  F +    LL+ TT+IE GID+  A+ III 
Sbjct: 837 RDLEELLPEASIGVAHGQMPERELERVMSDFYHQRFNLLVCTTIIETGIDIPSANTIIIN 896

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621
            A+  GLAQL+QLRGRVGR    +   LL      ++K++  RL  +++ E+   GF +A
Sbjct: 897 RADRLGLAQLYQLRGRVGRSHHRAYAYLLIPSKRSMTKDAGKRLEAIESIEELGTGFTLA 956

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  GE+LG +QSG
Sbjct: 957 THDLEIRGAGELLGEEQSG 975


>gi|311070702|ref|YP_003975625.1| transcription-repair coupling factor [Bacillus atrophaeus 1942]
 gi|310871219|gb|ADP34694.1| transcription-repair coupling factor [Bacillus atrophaeus 1942]
          Length = 1177

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/380 (35%), Positives = 212/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I +I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P
Sbjct: 621 PYQETEDQLRSINEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE I +  Q+  + V +++    +    + ++ + +G   ++IGTH L    
Sbjct: 681 TTILAQQHYETIMERFQDYPLTVGLLSRFRTRKEANETIKGLKNGTVDMVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 741 VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P  R P++T ++  N   + E IER    L+ G + Y++  +++  E+K      +V 
Sbjct: 801 TPPENRFPVQTYVVEYNGALVREAIER---ELARGGQVYFLYNRVDDIERKADEISMLVP 857

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +A  HG+M++ + ESVM +F  G   +L++TT+IE G+D+ + + +I+
Sbjct: 858 ---------DAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIV 908

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            + +  GL+QL+QLRGRVGR   ++     Y     L++ +  RL  +K  TE   GF I
Sbjct: 909 FDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKI 968

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +Q G
Sbjct: 969 AMRDLTIRGAGNLLGAQQHG 988


>gi|315187200|gb|EFU20957.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
           6578]
          Length = 1127

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/415 (32%), Positives = 234/415 (56%), Gaps = 17/415 (4%)

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           E LA ++  +  R++       P + E ++  +     PF  T+ Q   I+++ +DM   
Sbjct: 549 EDLAKRLLAIYSRRKLAHGFAFPPDTEWQM--EFEARFPFEETEDQLRCIEEVKRDMESP 606

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT +AL A   AV AG Q  I+AP  IL +QHYE  ++  +   + 
Sbjct: 607 RPMDRLVCGDVGFGKTEIALRAAFKAVTAGKQVAILAPTTILVEQHYETFQERLEGFPVR 666

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
             +++  +P   +++ L+ +  G+  I+IGTH + Q  + +  L L+++DE+ RFGV+ +
Sbjct: 667 AAMLSRFVPVPEQKEILKALREGKIDILIGTHRILQKDVVFKDLGLLVIDEEQRFGVKDK 726

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            +L +   +   L +TATPIPRTL ++ L   DIS +   P  R+PI+T I+  +  +EV
Sbjct: 727 ERLKELKASVDCLTLTATPIPRTLHMSLLKIRDISLLETPPRERRPIETHILEFS--EEV 784

Query: 472 IER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           I R ++  +  G + +++  ++E   +   ++ +ER           + + HG+MS    
Sbjct: 785 IARAIRREVERGGQVFYLHNRVETLPQ--VKTFIERLVP-----EVMVEVAHGKMSSHQL 837

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E +M  F +G   +L++TT+IE GI++ +A+ III+ A+ +G+AQL+QLRGRVGR +  +
Sbjct: 838 EEIMHRFIHGGFHVLVSTTIIENGINIPNANTIIIDRADMYGIAQLYQLRGRVGRSDRTA 897

Query: 591 SCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
              L Y     +S+ +  RL V+ +  +   GF +A +DL+ R  G +LG +QSG
Sbjct: 898 YAYLFYPAQREISELAAKRLQVIADHTELGAGFKVALKDLEVRGAGNLLGREQSG 952


>gi|187777479|ref|ZP_02993952.1| hypothetical protein CLOSPO_01047 [Clostridium sporogenes ATCC
           15579]
 gi|187774407|gb|EDU38209.1| hypothetical protein CLOSPO_01047 [Clostridium sporogenes ATCC
           15579]
          Length = 1172

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 143/437 (32%), Positives = 232/437 (53%), Gaps = 35/437 (8%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EWT +  + + + +E+    + L  +R   K   G   + +    ++     P+  T  Q
Sbjct: 577 EWTKTKNKVKKSIEEIAEDLVKLYAIRATLK---GYKYSDDTVWQKQFEEEFPYEETPDQ 633

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI+DI +DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQH
Sbjct: 634 VLAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQH 693

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y   K+   +  + V++I+     + ++  ++ I  G   I+IGTH + Q  I++  L L
Sbjct: 694 YNNFKQRFSDFPVTVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGL 753

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  DIS I   P  R P
Sbjct: 754 LIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYP 813

Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           ++T ++  N  D++I + +   +S G + Y++  ++E               S+HE  + 
Sbjct: 814 VQTYVVEYN--DQLIRDSILREISRGGQIYFVYNRVE---------------SIHEMASY 856

Query: 516 -------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                    + I HG+M + + E+V+  F      +L+ATT+IE G+D+ + + +II +A
Sbjct: 857 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILVATTIIETGMDIKNVNTMIIYDA 916

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623
           +  GL+QL+QLRGRVGR   ++ C L Y     L++ +  RL  +K+ TE   GF IA +
Sbjct: 917 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 976

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G ++G  Q G
Sbjct: 977 DLEIRGAGNMMGSAQHG 993


>gi|255529938|ref|YP_003090310.1| transcription-repair coupling factor [Pedobacter heparinus DSM
           2366]
 gi|255342922|gb|ACU02248.1| transcription-repair coupling factor [Pedobacter heparinus DSM
           2366]
          Length = 1113

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 141/436 (32%), Positives = 229/436 (52%), Gaps = 24/436 (5%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K ++G     +G +  ++  +  +  T  QE A  D+ +DM   + M R++ GDVG GKT
Sbjct: 536 KSQVGTAFAPDGYLETELEASFIYEDTPDQEKATSDVKKDMEAPHPMDRLVCGDVGFGKT 595

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            +A+ A   AV  G QA ++ P  ILA QH++      ++    V+ I         ++ 
Sbjct: 596 EIAIRAAFKAVANGKQAAVLVPTTILALQHFKTFTGRLKDFPCTVDYINRFKTSKQIKET 655

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++A G+  IIIGTH L    +++  L ++I+DE+ +FGV  + KL         L +T
Sbjct: 656 LAKVAEGKVDIIIGTHRLLSKDVKFKDLGIMIIDEEQKFGVSSKEKLRALRVNVDTLTLT 715

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486
           ATPIPRTL  + +G  D+S ++  P  R+ + T +   N  D++I E ++  L  G + +
Sbjct: 716 ATPIPRTLHFSLMGARDLSIMSTPPPNRQAVNTELHVFN--DKLIQEAVQFELDRGGQVF 773

Query: 487 WICPQIEEKKESN--FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +I  ++ +  +     +++V +         + I I HG++     E VM  F NG   +
Sbjct: 774 FIHNRVHDLPQLGGLIQTLVPK---------ARIGIAHGQLDGDQLEDVMLDFINGEKDV 824

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS--- 601
           L+ATT+IE G+D+ +A+ III +A  FGL+ LHQ+RGRVGR  + + C LL  PPLS   
Sbjct: 825 LVATTIIEAGLDIPNANTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLL-SPPLSTLT 883

Query: 602 KNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSL 655
             +  RLS ++   D   GF IA  DL  R  G +LG +QSG      F +    L +++
Sbjct: 884 SEARKRLSAIEEFSDLGSGFNIAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAI 943

Query: 656 LEIARKDAKHILTQDP 671
            E+   + K +   +P
Sbjct: 944 QELKTDEFKDLFKDEP 959


>gi|168181008|ref|ZP_02615672.1| transcription-repair coupling factor [Clostridium botulinum NCTC
           2916]
 gi|226950995|ref|YP_002806086.1| transcription-repair coupling factor [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668078|gb|EDT80057.1| transcription-repair coupling factor [Clostridium botulinum NCTC
           2916]
 gi|226842319|gb|ACO84985.1| transcription-repair coupling factor [Clostridium botulinum A2 str.
           Kyoto]
          Length = 1168

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 145/437 (33%), Positives = 232/437 (53%), Gaps = 35/437 (8%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EWT +  + + + +E+    + L  +R   K   G   + +    ++     P+  T  Q
Sbjct: 573 EWTKTKNKVKKSIEEIAEDLVKLYAIRATLK---GYKYSDDTVWQKQFEEEFPYEETPDQ 629

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI+DI +DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQH
Sbjct: 630 LLAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQH 689

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y   K+   +  I V++I+     + ++  ++ I  G   I+IGTH + Q  I++  L L
Sbjct: 690 YNNFKQRFWDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGL 749

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  DIS I   P  R P
Sbjct: 750 LIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYP 809

Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           ++T ++  N  D++I + +   +S G + Y++  ++E               S+HE  + 
Sbjct: 810 VQTYVVEYN--DQLIRDSILREISRGGQIYFVYNRVE---------------SIHEMASY 852

Query: 516 -------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                    + I HG+M + + E+V+  F      +LIATT+IE G+D+ + + +II +A
Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623
           +  GL+QL+QLRGRVGR   ++ C L Y     L++ +  RL  +K+ TE   GF IA +
Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G ++G  Q G
Sbjct: 973 DLEIRGAGNMMGSAQHG 989


>gi|153940210|ref|YP_001392893.1| transcription-repair coupling factor [Clostridium botulinum F str.
           Langeland]
 gi|152936106|gb|ABS41604.1| transcription-repair coupling factor [Clostridium botulinum F str.
           Langeland]
 gi|295320870|gb|ADG01248.1| transcription-repair coupling factor [Clostridium botulinum F str.
           230613]
          Length = 1168

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 145/437 (33%), Positives = 231/437 (52%), Gaps = 35/437 (8%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EWT +  + + + +E+    + L  +R   K   G   + +    ++     P+  T  Q
Sbjct: 573 EWTKTKNKVKKSIEEIAEDLVKLYAIRATLK---GYKYSDDTVWQKQFEEEFPYEETPDQ 629

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI+DI +DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQH
Sbjct: 630 LLAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQH 689

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y   K+   +  I V++I+     + ++  ++ I  G   I+IGTH + Q  I++  L L
Sbjct: 690 YNNFKQRFSDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGL 749

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  DIS I   P  R P
Sbjct: 750 LIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYP 809

Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           ++T ++  N  D++I + +   +S G + Y++  ++E               S+HE  + 
Sbjct: 810 VQTYVVEYN--DQLIRDSILREISRGGQIYFVYNRVE---------------SIHEMASY 852

Query: 516 -------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                    + I HG+M + + E V+  F      +LIATT+IE G+D+ + + +II +A
Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELEHVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623
           +  GL+QL+QLRGRVGR   ++ C L Y     L++ +  RL  +K+ TE   GF IA +
Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G ++G  Q G
Sbjct: 973 DLEIRGAGNMMGSAQHG 989


>gi|86140950|ref|ZP_01059509.1| transcription-repair coupling factor [Leeuwenhoekiella blandensis
           MED217]
 gi|85832892|gb|EAQ51341.1| transcription-repair coupling factor [Leeuwenhoekiella blandensis
           MED217]
          Length = 1127

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 208/377 (55%), Gaps = 15/377 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q SA + +  DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P 
Sbjct: 557 YEDTPDQSSATEAVKADMESPRPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPT 616

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH++   +  ++  + V+ +        +R+ LER+ +G+  IIIGTH L   ++
Sbjct: 617 TILAFQHHKTFSERLKDLPVTVDYLNRFRTAKEKRETLERLENGRVDIIIGTHQLTNKNV 676

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+IVDE+ +FGV  + KL         L +TATPIPRTL  + +   D+S IT 
Sbjct: 677 KFKDLGLLIVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLSTITT 736

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R PI+T II ++  + + + +   +  G + ++I  +++  KE     +++R    
Sbjct: 737 PPPNRYPIETHIIRLSE-ETIRDAISYEIQRGGQVFFIHNRLQNIKE--VAGMIQRLVP- 792

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + +AI HG+M     E +M  F +G   +L++TT+IE G+DV +A+ I I NA +
Sbjct: 793 ----DAKVAIGHGQMDGKKLEELMLQFMDGAFDVLVSTTIIESGLDVPNANTIFINNANN 848

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLS------KNSYTRLSVLKNTEDGFLIAEED 624
           FGL+ LHQ+RGRVGR  + + C  +  PPLS      +   T L    +   GF IA +D
Sbjct: 849 FGLSDLHQMRGRVGRSNKKAFCYFI-TPPLSAMTDDARKRITALEQFSSLGSGFNIAMKD 907

Query: 625 LKQRKEGEILGIKQSGM 641
           L+ R  G++LG +QSG 
Sbjct: 908 LEIRGAGDLLGGEQSGF 924


>gi|158422845|ref|YP_001524137.1| transcription-repair coupling factor [Azorhizobium caulinodans ORS
            571]
 gi|158329734|dbj|BAF87219.1| transcription-repair coupling factor [Azorhizobium caulinodans ORS
            571]
          Length = 1171

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 146/402 (36%), Positives = 224/402 (55%), Gaps = 29/402 (7%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  QE+AI  +L D+S  + M R++ GDVG GKT VAL A  A   +G Q  ++ P
Sbjct: 619  PYEETDDQEAAISAVLDDLSSGHPMDRLVCGDVGFGKTEVALRAAFAVALSGKQVAVVVP 678

Query: 330  IGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
              +LA+QH+    E  K    N      ++TG    A ++     +  G   I++GTHAL
Sbjct: 679  TTLLARQHFRTFSERFKGLPVNVAQASRMVTGKDLTAVKKG----LTDGTVDIVVGTHAL 734

Query: 386  FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               +IQ+  L LVIVDE+  FGV  + +L    +  HVL +TATPIPRTL L   G  ++
Sbjct: 735  LGKTIQFRDLGLVIVDEEQHFGVAHKERLKALRSEVHVLTLTATPIPRTLQLAMTGVREL 794

Query: 446  SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRS 502
            S I   P  R  ++T + P    D +I R + +L E   G +++++ P+I++  E   R 
Sbjct: 795  SLIATPPVDRLAVRTFVTP---FDPLIVR-EALLRERYRGGQSFYVVPRIDDLAE--VRE 848

Query: 503  VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             +E+  S+ E     +A+ HG+M+    E +M +F +G   +L++TT++E G+DV +A+ 
Sbjct: 849  FLEK--SVPE---VKVAVAHGQMAAGTLEDIMTAFYDGQYDVLLSTTIVESGLDVPNANT 903

Query: 563  IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---G 617
            +I+  A+ FGLAQL+QLRGRVGR +  +  I       P++  +  RL VL++ E    G
Sbjct: 904  LIVHRADMFGLAQLYQLRGRVGRAKARAYAIFSVPATKPITAQAERRLKVLQSLETLGAG 963

Query: 618  FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            F +A  DL  R  G +LG +QSG  K +    EL+  +LE A
Sbjct: 964  FQLASHDLDIRGAGNLLGDEQSGHIKEV--GYELYQEMLEEA 1003


>gi|229159227|ref|ZP_04287252.1| Transcription-repair-coupling factor [Bacillus cereus R309803]
 gi|228624242|gb|EEK81043.1| Transcription-repair-coupling factor [Bacillus cereus R309803]
          Length = 1176

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|168335026|ref|ZP_02693140.1| transcription-repair coupling factor [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 1175

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 175/595 (29%), Positives = 303/595 (50%), Gaps = 47/595 (7%)

Query: 61  ISEISEE-RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEML----KN 115
           ++EI EE +I T  G ++    + +QK    +IL+   +G ++  F Y   E +    + 
Sbjct: 431 VAEILEEQKIYTALGDLT----YDIQKG---QILI--ASGSLSHGFIYEDLEFVILSDRE 481

Query: 116 VFFEGRKITVTGKIK--KLKNRIIMVHPHYIFHNSQDVN-FPLIEAVYSLPTGLSVDLFK 172
           +F + RK++   K K  K+++ + +    Y+ H +  +  F  IE +  +  G++ D  K
Sbjct: 482 LFGKDRKVSTKKKYKGAKIESFMELAEGDYVVHENHGIGIFIGIEKI--VTEGVARDNLK 539

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKK-SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
            I  E  +    + +    DL+QK       A   N++ NP      EW     +     
Sbjct: 540 -INYEGGTLYVNINQM---DLVQKYVGSEGAAPKLNMLGNP------EWKKAKSKARNSV 589

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           + +A ++ LL  +++  +  G     +     +   + P+  T  Q  AI+ +  DM   
Sbjct: 590 KNIAKELILLYSKRENSR--GFAYEKDSIWQTEFEESFPYEETSDQIDAIQAVKTDMESD 647

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VA+ A   A+    Q   + P  +LAQQH+E   K  ++  I 
Sbjct: 648 KIMDRLILGDVGYGKTEVAIRAAFKAILNHKQVAYLVPTTVLAQQHFERFLKRMESQAIS 707

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V +++        ++ L+ I  G   I+IGTH L    + +  L L+I+DE+ RFGV  +
Sbjct: 708 VGVLSRFRTPKQIKETLKGIESGMIDIVIGTHRLLSKDVLFKDLGLLIIDEEQRFGVAHK 767

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            KL Q  T    L +TATPIPRTL ++ +G  D+S I E P+ R+ ++T ++     D +
Sbjct: 768 EKLKQMRTEVDALTLTATPIPRTLQMSLIGIRDMSVIEEAPSERRAVQTYVLE-ESDDFI 826

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDK 530
            + +   ++   + Y++  +++        ++VE+   L      + +A+ HG+MS  + 
Sbjct: 827 KDAINREINREGQVYFLSXRVQ--------NIVEKAAQLSNMVPXAKVALAHGQMSVREL 878

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E++M+ F+N    +L+ TT+IE G+D+ +A+ III +A+  GL+QL+QLRGRVGR ++ +
Sbjct: 879 EAIMERFENKEINVLVCTTIIETGLDIANANTIIIVDADKMGLSQLYQLRGRVGRSDKQA 938

Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
              LLY     LS+ +  RL+ +K       GF IA  DL+ R  G++LG  QSG
Sbjct: 939 YAYLLYKRDXILSEVAEKRLNAIKQFTQLGAGFKIAMRDLEIRGAGDLLGASQSG 993


>gi|291614691|ref|YP_003524848.1| transcription-repair coupling factor [Sideroxydans lithotrophicus
            ES-1]
 gi|291584803|gb|ADE12461.1| transcription-repair coupling factor [Sideroxydans lithotrophicus
            ES-1]
          Length = 1190

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 149/424 (35%), Positives = 226/424 (53%), Gaps = 23/424 (5%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q +AI+ +L D+     M R++ GDVG GKT VAL A   A   G Q  ++ P 
Sbjct: 647  FEETADQAAAIEAVLLDLQSGKPMDRLICGDVGFGKTEVALRAAFVAASEGKQVAVLVPT 706

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QH++       +  I +  ++         +AL+ +A G+  I+IGTH L Q  +
Sbjct: 707  TLLAEQHFQNFSTRFADWPIRIAELSRFRSAKEVTQALKDLADGKLDIVIGTHKLIQKDV 766

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +++ L LVI+DE+HRFGVQQ+ KL        VL +TATPIPRTL ++  G  D S I  
Sbjct: 767  KFHNLGLVILDEEHRFGVQQKEKLKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIAT 826

Query: 451  KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             P  R  IKT +   ++  I E + R    L  G + Y++  +++        +++E+  
Sbjct: 827  APQRRLSIKTFVSGFSQGVIREAVLR---ELKRGGQVYFLHNEVD-----TIANMLEKLE 878

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            +L     + I + HG+M + D E+VM  F +    +L+ +T+IE GIDV  A+ II+  A
Sbjct: 879  TLLPE--ARIRVAHGQMGERDLEAVMRDFHHQRFNVLLCSTIIETGIDVPTANTIIMNRA 936

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEE 623
            + FGLAQLHQLRGRVGR    +   LL      L+  +  RL  ++  E    GF +A  
Sbjct: 937  DRFGLAQLHQLRGRVGRSHHQAYAYLLVDSMDGLTAQAKKRLEAIQAMEQLGSGFFLAMH 996

Query: 624  DLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
            DL+ R  GE+LG  QSG M +   +   L++ +L  A    K    ++PD+T   G +  
Sbjct: 997  DLEIRGAGEVLGESQSGEMQEIGFS---LYNDMLAAAIASLKQ--GKEPDMTHPLGVTTE 1051

Query: 683  ILLY 686
            I L+
Sbjct: 1052 INLH 1055


>gi|77917709|ref|YP_355524.1| transcription-repair coupling factor [Pelobacter carbinolicus DSM
           2380]
 gi|77543792|gb|ABA87354.1| transcription-repair coupling factor [Pelobacter carbinolicus DSM
           2380]
          Length = 1161

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 213/378 (56%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AI D+L DM     M R++ GDVG GKT VA+ A   A   G Q  ++ P
Sbjct: 621 PYEETADQMAAINDVLTDMQTPRAMDRVICGDVGYGKTEVAIRAAYKAALDGKQVAVLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH +   +  ++T + V  ++     A +++ L++ A G+  I+IGTH L Q  
Sbjct: 681 TTILARQHGQTFAERLKDTPVTVASLSRLNSSAEQKQILQQAADGKIDILIGTHRLLQRD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+IVDE+ RFGV  + +L +      +L +TATPIPRTL ++ LG  D+S I 
Sbjct: 741 VRFKDLGLLIVDEEQRFGVTHKERLKKLRAEVDLLTLTATPIPRTLHMSLLGLRDLSVID 800

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R+ I+T    ++R D+ + R  ++  L  G + +++  +++     N  ++ E  
Sbjct: 801 TPPVDRQVIRTY---VSRFDDDLIRQAILNELRRGGQVFFVHNRVQ-----NIGAMAEFI 852

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            SL    T  +A+ HG+M++   E+VM  F  G   +L+ +T+IE G+D+  A+ II+  
Sbjct: 853 QSLVPEAT--VAVGHGQMTEKALEAVMMDFVEGKTNVLVCSTIIENGLDIPRANTIIVNR 910

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
           A+ FGLAQL+QLRGRVGR    +   LL      L+  +  RL VL    +   GF IA 
Sbjct: 911 ADCFGLAQLYQLRGRVGRSHLRAYAYLLIPGESTLTHEARERLRVLTELTELGAGFRIAS 970

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G++LG KQSG
Sbjct: 971 HDLELRGAGDLLGPKQSG 988


>gi|171463611|ref|YP_001797724.1| transcription-repair coupling factor [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193149|gb|ACB44110.1| transcription-repair coupling factor [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 1181

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 148/379 (39%), Positives = 204/379 (53%), Gaps = 21/379 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  I+AP 
Sbjct: 622 FEETPDQANAIAAVIGDMTSGTPMDRLVCGDVGFGKTEVALRASFVAVMGGKQVAILAPT 681

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH    K    +  + +  ++          AL  IA G+A IIIGTH L     
Sbjct: 682 TLLAEQHVATWKDRFADWPVRIVELSRFKTTKEINVALAAIAKGEADIIIGTHKLLSKET 741

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           Q+  L LVI DE+HRFGV+Q+  L        +L +TATPIPRTL +   G  + S I  
Sbjct: 742 QFANLGLVIADEEHRFGVRQKDALKALRAEVDILTLTATPIPRTLGMAMEGLREFSIIAT 801

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERF 507
            P  R  IKT +      D+VI   + VL E   G + Y++  ++E        ++  R 
Sbjct: 802 APQKRLAIKTFV--RREGDDVIR--EAVLREIKRGGQVYFLHNEVE--------TIQNRK 849

Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           ++L E    + I++ HG+M + + ESVM  F      +L+ TT+IE GIDV  A+ II+ 
Sbjct: 850 HALQELIPEARISVAHGQMHERELESVMREFVTQRTNILLCTTIIETGIDVPTANTIIMH 909

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGLAQLHQLRGRVGR    +   LL      LSK +  RL+ ++  E+   GF +A
Sbjct: 910 RADKFGLAQLHQLRGRVGRSHHRAYAYLLVPNSEALSKQAQLRLNAIQAMEELGSGFYLA 969

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  GE+LG KQSG
Sbjct: 970 MHDLEIRGAGEVLGDKQSG 988


>gi|227542464|ref|ZP_03972513.1| transcription-repair coupling factor [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181662|gb|EEI62634.1| transcription-repair coupling factor [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 1218

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 202/379 (53%), Gaps = 15/379 (3%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           N P+  T+ Q  AI  +  DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++
Sbjct: 629 NFPYVETEDQMLAIDAVKHDMEQPVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVL 688

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH    ++      I +  ++   P    R+ ++ +  G   I+IGTH L Q
Sbjct: 689 VPTTLLAQQHEATFRERMDGFGITIRQLSRFTPDKQAREIIKGLVDGSVDIVIGTHRLLQ 748

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +Q+  L LVIVDE+ RFGV+ +  +        VL M+ATPIPRTL ++  G  +++ 
Sbjct: 749 TGVQWKDLGLVIVDEEQRFGVEHKEHIKALRAHVDVLTMSATPIPRTLEMSMSGIREMTT 808

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I   P  R+P+ T  +      +V   ++  L    + +++         +  +S+ ER 
Sbjct: 809 ILTPPQDRRPVLT-YVGAQEDKQVAAAIRRELLRDGQVFYV--------HNRVKSIEERA 859

Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             L E    + I + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+E
Sbjct: 860 RQLRELVPEARIVVAHGQMSEEQLEKTVQGFWDREFDVLVCTTIVETGLDIANANTLIVE 919

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621
           NA H GL+QLHQLRGRVGR  E +    LY     L++ SY RL+ +    D   G  +A
Sbjct: 920 NAHHMGLSQLHQLRGRVGRSRERAYAYFLYPKGQVLTETSYERLTTIAQNNDMGAGMAVA 979

Query: 622 EEDLKQRKEGEILGIKQSG 640
            +DL+ R  G +LG +QSG
Sbjct: 980 MKDLEMRGAGNVLGAEQSG 998


>gi|152980432|ref|YP_001353098.1| transcription-repair coupling factor [Janthinobacterium sp.
            Marseille]
 gi|151280509|gb|ABR88919.1| transcription-repair coupling factor (superfamily II helicase)
            [Janthinobacterium sp. Marseille]
          Length = 1147

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 152/423 (35%), Positives = 224/423 (52%), Gaps = 19/423 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q +AI  +++DM+    M R++ GDVG GKT VAL A   AV  G Q  I+AP 
Sbjct: 603  FEETADQAAAINAVIKDMTSGKPMDRLICGDVGFGKTEVALRAAFVAVLGGKQVAILAPT 662

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QH +       +  + +  ++         +A++ +A G   I+IGTH L    I
Sbjct: 663  TLLAEQHAQTFADRFADWPVRIAELSRFRTAKEVTQAIKGMADGTIDIVIGTHKLLSGDI 722

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I  
Sbjct: 723  KFSRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSIIAT 782

Query: 451  KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R  IKT +   N  D VI E     L  G + Y++  ++E  +  N ++++E    
Sbjct: 783  APQKRLAIKTFVRSEN--DSVIREACLRELKRGGQVYFLHNEVETIQ--NRKAMLEELMP 838

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                  + I + HG++ + D E +M  F      +L+ TT+IE GIDV  A+ II+  A+
Sbjct: 839  -----EARIGVAHGQLHERDLERIMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRAD 893

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEED 624
             FGLAQLHQLRGRVGR    +   LL H    LSK +  RL  ++  E+   GF +A  D
Sbjct: 894  KFGLAQLHQLRGRVGRSHHQAYAYLLVHDVQGLSKLAQRRLDAIQQMEELGSGFYLAMHD 953

Query: 625  LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
            L+ R  GE+LG  QSG    +  Q  L+  +L  A +  K+   ++PDL +    +  I 
Sbjct: 954  LEIRGAGEVLGDNQSGEMSEIGFQ--LYSDMLNEAVRSLKN--GKEPDLAAPLASTTEIN 1009

Query: 685  LYL 687
            L++
Sbjct: 1010 LHV 1012


>gi|227487825|ref|ZP_03918141.1| transcription-repair coupling factor [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092152|gb|EEI27464.1| transcription-repair coupling factor [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 1218

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 202/379 (53%), Gaps = 15/379 (3%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           N P+  T+ Q  AI  +  DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++
Sbjct: 629 NFPYVETEDQMLAIDAVKHDMEQPVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVL 688

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH    ++      I +  ++   P    R+ ++ +  G   I+IGTH L Q
Sbjct: 689 VPTTLLAQQHEATFRERMDGFGITIRQLSRFTPDKQAREIIKGLVDGSVDIVIGTHRLLQ 748

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +Q+  L LVIVDE+ RFGV+ +  +        VL M+ATPIPRTL ++  G  +++ 
Sbjct: 749 TGVQWKDLGLVIVDEEQRFGVEHKEHIKALRAHVDVLTMSATPIPRTLEMSMSGIREMTT 808

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I   P  R+P+ T  +      +V   ++  L    + +++         +  +S+ ER 
Sbjct: 809 ILTPPQDRRPVLT-YVGAQEDKQVAAAIRRELLRDGQVFYV--------HNRVKSIEERA 859

Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             L E    + I + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+E
Sbjct: 860 RQLRELVPEARIVVAHGQMSEEQLEKTVQGFWDREFDVLVCTTIVETGLDIANANTLIVE 919

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621
           NA H GL+QLHQLRGRVGR  E +    LY     L++ SY RL+ +    D   G  +A
Sbjct: 920 NAHHMGLSQLHQLRGRVGRSRERAYAYFLYPKGQVLTETSYERLTTIAQNNDMGAGMAVA 979

Query: 622 EEDLKQRKEGEILGIKQSG 640
            +DL+ R  G +LG +QSG
Sbjct: 980 MKDLEMRGAGNVLGAEQSG 998


>gi|317052468|ref|YP_004113584.1| transcription-repair coupling factor [Desulfurispirillum indicum
           S5]
 gi|316947552|gb|ADU67028.1| transcription-repair coupling factor [Desulfurispirillum indicum
           S5]
          Length = 1048

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 134/389 (34%), Positives = 211/389 (54%), Gaps = 15/389 (3%)

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +  +  + +   P+  T+ Q  AIK+ ++DM   + M R++ GDVG GKT +AL A    
Sbjct: 504 DSSLYDEFVAQFPYEETEDQLQAIKETIEDMCSPHPMDRLVCGDVGYGKTEIALRAAMKC 563

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           VE+G QA I+AP  IL +QH+   ++      I V++++        + A+ R+A G+  
Sbjct: 564 VESGYQAAILAPTTILVEQHFRTFRERFTPFGIRVDMLSRFRSAKQNQDAIARLAAGEID 623

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH L    + ++ L L+++DE+ RFGV  + KL Q      VL +TATPIPRTL +
Sbjct: 624 IVIGTHKLLGKGVSFHNLALLVIDEEQRFGVTHKEKLKQFKANVDVLTLTATPIPRTLHM 683

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKK 496
              G   +S I   P  R+ IKT +I     DE++ + L      G + Y++  ++E   
Sbjct: 684 AMGGIKKMSVIETPPKDRRAIKTEVIEFQ--DEILRQGLMREFHRGGQIYFLHNRVE--- 738

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                ++  R   L     + +A+ HG+MS+   E VM  F  G   +L+ ++++E G+D
Sbjct: 739 --TINAIALRVQGLIPE--ARVAVAHGQMSEAQLERVMLEFSAGEHDVLVCSSIVESGLD 794

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNT 614
           V  A+ I I  A+  GLAQL+QLRGRVGR E  + C L+  P   L   +  R+ V++  
Sbjct: 795 VPRANTIFINRADTLGLAQLYQLRGRVGRSERRAFCYLIIPPFDTLHDVAQKRIRVIEEL 854

Query: 615 E---DGFLIAEEDLKQRKEGEILGIKQSG 640
                GF +A  DL+ R  G +LG++QSG
Sbjct: 855 SYLGAGFRLATYDLEIRGAGNLLGMEQSG 883


>gi|167039252|ref|YP_001662237.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514]
 gi|300913892|ref|ZP_07131209.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561]
 gi|307725423|ref|YP_003905174.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513]
 gi|166853492|gb|ABY91901.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514]
 gi|300890577|gb|EFK85722.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561]
 gi|307582484|gb|ADN55883.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513]
          Length = 1165

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 240/462 (51%), Gaps = 36/462 (7%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFK 248
           DL+QK   P+         NP K       EW    R+     E LA  +  L  ++Q  
Sbjct: 551 DLVQKYVGPT--------DNPPKLNKLGGSEWLKAKRKAKKAVEDLAKDLIQLYAKRQMV 602

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  G   + +    ++     P+  T+ Q   IK+I +DM +   M R+L GDVG GKT 
Sbjct: 603 K--GHAFSPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTE 660

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           VAL A   AV  G Q   + P  ILA QHY  FI+++ +   + +E+++       + K 
Sbjct: 661 VALRAAFKAVADGKQVAFLCPTTILAYQHYANFIERFKE-FPVKIEMLSRFRTPKEQSKI 719

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           ++ +A G   II+GTH L Q+ I++  L L+I+DE+ RFGV  + K+ +      VL ++
Sbjct: 720 IKELAEGNIDIIVGTHRLLQNDIKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLS 779

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKA 485
           ATPIPRTL ++ +G  D+S +   P  R P++T ++  N   I + I R    ++ G + 
Sbjct: 780 ATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILR---EIARGGQV 836

Query: 486 YWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y++  ++   EK  S  + +V             +A+ HG+M +   E VM  F NG   
Sbjct: 837 YFVYNRVNGIEKMASFVKDLVP---------GCRVAVAHGQMEESQLEKVMIDFLNGEYD 887

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LS 601
           +L++TT+IE G+D+ + + II+ +A+  GL+QL+QLRGRVGR   ++     Y     LS
Sbjct: 888 VLVSTTIIETGLDIPNVNTIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLS 947

Query: 602 KNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
           + +  RL  +K  TE   GF IA  DL+ R  G +LG +Q G
Sbjct: 948 EVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHG 989


>gi|302871262|ref|YP_003839898.1| transcription-repair coupling factor [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574121|gb|ADL41912.1| transcription-repair coupling factor [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 1143

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 141/429 (32%), Positives = 235/429 (54%), Gaps = 18/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++     E++A  +  L  ++Q  +  G   + +    ++     P++ T+ Q 
Sbjct: 554 EWQKQKQKVRKSLEIVAKDLVELYAKRQLGQ--GFKFSKDTVWQKEFEEKFPYTETEGQL 611

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I +DM  +  M RIL GDVG GKT VA+ A   AV    Q  ++ P  ILAQQHY
Sbjct: 612 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 671

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                  ++  + +E+++    +  ++K ++ +  G   I+IGTH L    +++  L L+
Sbjct: 672 MTFSARMKDFPVTIEVLSRLKSETQQKKIIKGLRKGTIDIVIGTHRLLSSDVKFKDLGLL 731

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+H+FGV+ + K+ +  T   VL +TATPIPRTL +  LG  D+S I + P  R P+
Sbjct: 732 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRFPV 791

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++  N   I E I  LK + S G + +++  ++++ +E     V  +  +L    + 
Sbjct: 792 QTFVLEYNERIIKEAI--LKEI-SRGGQVFYLYNRVKDIQE-----VAAKLQNLVGD-SV 842

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HG+M + + E V+  F  G   +L+ TT+IE G+D+ + + +I+E+++  GLAQL
Sbjct: 843 KIACAHGQMEEEELEEVLIDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLAQL 902

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGRVGR   ++     +     LS+ +  RL+ +K  TE   GF IA  DL+ R  G
Sbjct: 903 YQLRGRVGRSSRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRGAG 962

Query: 632 EILGIKQSG 640
            I+G  Q G
Sbjct: 963 SIVGKLQHG 971


>gi|229021662|ref|ZP_04178248.1| Transcription-repair-coupling factor [Bacillus cereus AH1272]
 gi|228739637|gb|EEL90047.1| Transcription-repair-coupling factor [Bacillus cereus AH1272]
          Length = 1010

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 448 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 507

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 508 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 567

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 568 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 627

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 628 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 684

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 685 EISMLVP---------DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIP 735

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 736 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTE 795

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 796 LGSGFKIAMRDLSIRGAGNLLGAEQHG 822


>gi|258513568|ref|YP_003189790.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans
            DSM 771]
 gi|257777273|gb|ACV61167.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans
            DSM 771]
          Length = 1197

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 150/432 (34%), Positives = 231/432 (53%), Gaps = 25/432 (5%)

Query: 219  EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EW+   ++ + A  E+    +AL   R+  +   G P + +    Q+     P+  T  Q
Sbjct: 603  EWSRVKSKVKEAVKEMAQELLALYAAREAVQ---GHPFSKDTVWQQEFEAAFPYEETPDQ 659

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              AI+++  DM +   M R+L GDVG GKT VAL A   AV  G Q  ++ P  ILAQQH
Sbjct: 660  LKAIEEVKADMERPRPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVLVPTTILAQQH 719

Query: 338  YEFIK----KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            +   K    KY  N  ++   IT       +R+ ++ +  GQ  I+IGTH L QD I++ 
Sbjct: 720  FNTFKERFAKYPVNIAMLSRFITAR----RQRQIVQELLLGQVDIVIGTHRLVQDDIKFK 775

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L LV+VDE+ RFGV  + KL Q      VL +TATPIPRTL ++ +G  D S +   P 
Sbjct: 776  DLGLVVVDEEQRFGVTHKEKLKQLRQNVDVLTLTATPIPRTLHMSIVGVRDTSLLETPPE 835

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             R P++T ++    +  V E ++  L  G + Y++  ++     ++   V      L   
Sbjct: 836  DRIPVQTYVLEEEPVI-VREAIRRELGRGGQVYYVHNRV-----ADLDRVAGWLKGLVPD 889

Query: 514  FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              ++IAI HG+M +   E+VM  F N    +L+ TT+IE G+D+ + + +I+++A++ GL
Sbjct: 890  --AAIAIGHGQMKEDRLENVMLDFMNKKFDILLCTTIIETGLDIQNVNTLIVKDADYMGL 947

Query: 574  AQLHQLRGRVGRGEEI--SSCILLYHPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQR 628
            AQL+QLRGRVGR   +  + C       +S+ +  RLS ++  TE   G+ IA  DL+ R
Sbjct: 948  AQLYQLRGRVGRTNRLAYAYCTFRGDKVMSELAEKRLSAVREFTEFGSGYKIAMRDLEIR 1007

Query: 629  KEGEILGIKQSG 640
              G ILG +Q G
Sbjct: 1008 GAGNILGPEQHG 1019


>gi|227548210|ref|ZP_03978259.1| possible transcription-repair coupling factor [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079684|gb|EEI17647.1| possible transcription-repair coupling factor [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 1191

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 132/429 (30%), Positives = 222/429 (51%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W S  R+  A    +A ++  L  ++Q         +   ++  ++  N PF  T+ Q 
Sbjct: 577 DWRSTKRKARAAVREIAAELVQLYAKRQAAPGHAFAPDTPWQV--EMEDNFPFVETEDQL 634

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI  + +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH+
Sbjct: 635 LAIDAVKEDMEKPTPMDRVIVGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHF 694

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                      + +  ++        ++ L  +A G   ++IGTH L    +Q+  L L+
Sbjct: 695 STFSTRMDGFGVTIRELSRFTSAKESKETLAGLADGSVDVVIGTHRLLATGVQWKNLGLI 754

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ RFGV+ +  +    +   VL MTATPIPRTL ++  G  +++ IT  P  R P+
Sbjct: 755 VVDEEQRFGVEHKEHIKALKSHVDVLTMTATPIPRTLEMSLTGIREMTSITTPPEDRHPV 814

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
            T + P     ++   ++  L    + ++I  ++   EK     R +V           +
Sbjct: 815 LTYVGP-QEDKQIAAAIRRELLRDGQIFYIHNKVADIEKAARRVRDLVPE---------A 864

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            + + HG+MS+   E  +  F N    +L+ TT++E G+D+ +A+ +I+ENA++ GL+QL
Sbjct: 865 RVVVAHGQMSEQLLEQTVQGFWNREYDVLVCTTIVETGLDIANANTLIVENAQNMGLSQL 924

Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           HQLRGRVGR  + +    LY     L++ SY RL+ +    D   G  +A++DL+ R  G
Sbjct: 925 HQLRGRVGRSRDRAYAYFLYPKDKTLTETSYDRLATIAQNNDLGSGIAVAQKDLEMRGAG 984

Query: 632 EILGIKQSG 640
            +LG +QSG
Sbjct: 985 NVLGAEQSG 993


>gi|13235409|emb|CAC33609.1| Mfd protein [Rickettsia montanensis]
          Length = 1121

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 154/470 (32%), Positives = 254/470 (54%), Gaps = 42/470 (8%)

Query: 237 QIALLLMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           +IAL L++   K+++    P+  + +   K   N PFS T+ Q +AI DI +D+     M
Sbjct: 540 EIALHLIQIAAKRKLSSSAPVEFDLEEYDKFCANFPFSETEDQLTAINDIKEDLRNGMLM 599

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346
            R++ GDVG GKT VA+ A+    ++      Q  I+ P  IL  QH+    E  K +  
Sbjct: 600 DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAIVVPTTILCSQHFSRFIERFKGFGL 659

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           N + +  +I+    +  R +    +  G+ +IIIGTH+L   +I+++ L L+I+DE+  F
Sbjct: 660 NIKQLSSVISSKEAKIIRSE----LESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHF 715

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  ++T ++P  
Sbjct: 716 GVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMP-- 773

Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAII 521
             D VI R   +L E   G +++++ P+I+  E  E   + +V            S  I 
Sbjct: 774 -FDPVIIR-DALLREHFRGGRSFYVVPRIKDIEDIEKQLKQIVPEL---------SYKIA 822

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M+    + VM  F  G   +L++TT+IE GID+ +A+ +II  A+  GL+QL+QLRG
Sbjct: 823 HGKMAPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHKADMLGLSQLYQLRG 882

Query: 582 RVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636
           R+GRG+      L+   H  ++ +S  RL +++N+     GF IA  D+  R  G ++G 
Sbjct: 883 RIGRGKMRGYAYLMVASHKKMTSHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGE 942

Query: 637 KQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQDPDLTSVR-GQSIRI 683
           +QSG  K +    EL+  +LE  IA    + I+++ P + ++  G S+ I
Sbjct: 943 EQSGQIKEV--GTELYQEMLEEQIAIFKDEPIVSEQPFIPTINLGLSVFI 990


>gi|188996867|ref|YP_001931118.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931934|gb|ACD66564.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 938

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 133/398 (33%), Positives = 226/398 (56%), Gaps = 17/398 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P+  + ++  K  R  PF  T  Q  AIKDI  D  +   M R++ GDVG GKT VA+  
Sbjct: 393 PLKTDDELISKFEREFPFVETPDQIKAIKDIKSDFLKPKPMERLICGDVGFGKTEVAIRG 452

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  +V  G QA+++ P  +LA QHY+ +K+  +   IIV+ ++    +      ++    
Sbjct: 453 IFISVINGYQALLLVPTTVLAYQHYKKLKERLEPYGIIVKNLSRLKSKKENDNTIKAFEE 512

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G+  +++ TH +   ++ + KL L+++DE+HRFGV+ + K+ Q   +   L +TATPIPR
Sbjct: 513 GKIDVLVATHKILHTNLSFNKLELLVIDEEHRFGVKAKEKIRQIRESVDTLYLTATPIPR 572

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQI 492
           TL +   G  DIS +   P GR  IKT +   N  +E+I++ ++  +    + +++  +I
Sbjct: 573 TLNMALSGLKDISVLNTPPEGRYEIKTYV--SNFDEELIKKAIEFEIDRNGQVFYLHNRI 630

Query: 493 EEKKESN--FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E  KE+    +++V++         + +  IHG+M   + E  +  F  G   +LI+T++
Sbjct: 631 ETIKETADFLKNLVKK---------AKVDFIHGKMKPSEIEKKIIDFLEGKTNVLISTSI 681

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL-S 609
           IE GID+  A+ +I++ A+ FGLAQL+ LRGRVGRG   + C L+    ++K++  R+ +
Sbjct: 682 IETGIDIPTANTLIVDRADLFGLAQLYHLRGRVGRGNIQAYCYLIVPKEITKDAKRRIDT 741

Query: 610 VLKNTE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
           +LK T    G  ++ ED++ R  G ILG++QSG  K L
Sbjct: 742 LLKLTRPGSGLKVSIEDMQIRGPGNILGVEQSGFIKSL 779


>gi|78779345|ref|YP_397457.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9312]
 gi|78712844|gb|ABB50021.1| transcription-repair coupling factor [Prochlorococcus marinus str.
            MIT 9312]
          Length = 1174

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 136/425 (32%), Positives = 235/425 (55%), Gaps = 18/425 (4%)

Query: 258  EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +G    ++  + P+ PT  Q +A+K+I  DM     M R++ GDVG GKT VA+ A+  A
Sbjct: 599  DGPWQDELEESFPYQPTPDQITAVKEIKSDMESDKPMDRLVCGDVGFGKTEVAVRAIFKA 658

Query: 318  VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
            + +G Q +++AP  ILAQQH+  I        I V ++        R++    + + +  
Sbjct: 659  ITSGKQVILLAPTTILAQQHWRTINNRFSPYPIKVSLLNRFKTVNERKEIYAGLKNNKID 718

Query: 378  IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +++ TH +    I+   L L+++DE+ RFGV+Q+ K+ +  T   VL ++ATPIPRTL +
Sbjct: 719  LVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYM 778

Query: 438  TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +  G   +S +   P  R+ IKT +  I+ +D +   +   L  G + +++ P+I     
Sbjct: 779  SLSGLRQMSLLNTPPPSRRSIKTYLSEID-MDVIRTAINQELDRGGQIFYVLPRI----- 832

Query: 498  SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            S+    V +  ++  +    IA  HG+M++ + E+ M SF NG   L+I TT+IE G+D+
Sbjct: 833  SDIDQAVNKLKNMFPNLKFIIA--HGQMNETELENSMISFNNGEVDLMICTTIIESGLDI 890

Query: 558  VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVLKNT 614
               + IIIE++  FGL+QL+QLRGRVGR   I +   L++P L+K   ++  RL  +K+ 
Sbjct: 891  PKVNTIIIEDSHKFGLSQLYQLRGRVGRS-GIQAHAWLFYPNLNKINDSAKQRLKAIKDF 949

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILT 668
             +   G+ +A +D++ R  G +LG +QSG      + +    LH+++ EI+ ++   +  
Sbjct: 950  SELGSGYQLAMKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEVSD 1009

Query: 669  QDPDL 673
               DL
Sbjct: 1010 TQIDL 1014


>gi|295093547|emb|CBK82638.1| transcription-repair coupling factor [Coprococcus sp. ART55/1]
          Length = 1188

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 131/396 (33%), Positives = 210/396 (53%), Gaps = 17/396 (4%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   + + +  ++     P++ T  Q  AI+D+  DM     M R++ GDVG GKT VA+
Sbjct: 611 GFAYSPDSEWQKEFEETFPYTETDDQLKAIEDVKADMESHKIMDRLVCGDVGFGKTEVAI 670

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV    Q   + P  ILA+QHYE   +  ++  + V ++     Q   +  L  +
Sbjct: 671 RAAFKAVGDSKQVAYLVPTTILAEQHYETFTERMKDYPVTVRLLCRFCTQKEIKSTLREL 730

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G+  I+IGTH L    +++  L L+I+DE+ RFGV  + K+ +  T   VL +TATPI
Sbjct: 731 KEGKVDIVIGTHRLLSKDVEFKNLGLLIIDEEQRFGVNHKEKIKEMKTNVDVLTLTATPI 790

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL ++ +G  D+S + E P  R+PI+T ++  +R +   E +   L+   + Y++  +
Sbjct: 791 PRTLHMSLVGIRDMSLLEEPPVDRRPIQTYVMEYDR-ELAREAIARELARHGQVYYVYNR 849

Query: 492 IE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +E  E+   + RS+V   N         +   HG+M     E +M  F      +L+ TT
Sbjct: 850 VEGIERFADDVRSLVPYAN---------VEFAHGQMDGRTLEDIMYRFNKKEIDVLVCTT 900

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTR 607
           +IE G+D+ +A+ III +A  FGLAQL+QLRGRVGR +  +   + Y  +  +S+ +  R
Sbjct: 901 IIETGLDIPNANTIIIHDANLFGLAQLYQLRGRVGRSDRSAFAFMFYRRNKMISEVAEKR 960

Query: 608 LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           L  +K   D   G  +++ DL  R  G +LG  QSG
Sbjct: 961 LRAIKEYTDLGSGVKVSKADLNIRGAGSVLGESQSG 996


>gi|254724194|ref|ZP_05185979.1| transcription-repair coupling factor [Bacillus anthracis str.
           A1055]
          Length = 1176

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLISDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQVYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|83858282|ref|ZP_00951804.1| transcription-repair coupling factor [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853105|gb|EAP90957.1| transcription-repair coupling factor [Oceanicaulis alexandrii
           HTCC2633]
          Length = 1162

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 140/402 (34%), Positives = 222/402 (55%), Gaps = 27/402 (6%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q +AI D+  D ++   M R++ GDVG GKT VAL A   A  +G Q  I+A
Sbjct: 609 FPYVETDDQLNAIDDVFSDFAKGRPMDRLICGDVGFGKTEVALRAAFVAAMSGRQVAIVA 668

Query: 329 PIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           P  +LA+QH+    E  K +    + +  +++     A R++    +A G   I+IGTHA
Sbjct: 669 PTTLLARQHFKTFEERFKGWPVKVRQLSRLVSTKEATATRKE----LADGTCEIVIGTHA 724

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +   ++++  L L+++DE+ RFGV+ + +L +  T  HVL +TATPIPRTL L+  G  D
Sbjct: 725 ILAKTVKFADLGLLVIDEEQRFGVKHKERLKELKTDVHVLTLTATPIPRTLQLSMAGIRD 784

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSV 503
           +S I   P  R  ++T + P + +  V E L      G ++Y++ P+I + ++ ++F   
Sbjct: 785 LSIIATPPVDRLAVRTYVTPFDSV-TVREALLRERYRGGQSYYVAPRISDLEDIASF--- 840

Query: 504 VERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
                 L E     S  I HG+M+    E +M +F  G   +L++TT++E GID+  A+ 
Sbjct: 841 ------LREQVPEVSFVIAHGQMAGGQLEDIMTAFYEGRYDVLVSTTIVESGIDIPTANT 894

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---G 617
           +II  A+ FGLA L+QLRGRVGR +  +   L    +  L+  +  RL +L++ +    G
Sbjct: 895 MIIHRADMFGLAPLYQLRGRVGRAKARAYAYLTTPANQKLTATADKRLKILQSLDSLGAG 954

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           F +A  DL  R  G +LG +QSG  K +    EL+ S+LE A
Sbjct: 955 FTLASHDLDLRGGGNLLGEEQSGHIKDVGV--ELYQSMLEEA 994


>gi|257092702|ref|YP_003166343.1| transcription-repair coupling factor [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045226|gb|ACV34414.1| transcription-repair coupling factor [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1141

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 140/376 (37%), Positives = 202/376 (53%), Gaps = 15/376 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q +AI  +++DM     M R++ GDVG GKT VAL A   AV  G Q  ++ P 
Sbjct: 597 FEETADQAAAINAVIEDMQSGRPMDRLVCGDVGFGKTEVALRAAFCAVAGGRQVAVLCPT 656

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L +QH++       +  + +  ++         +AL  +A G+  IIIGTH L Q  +
Sbjct: 657 TLLCEQHHQTFSDRFADWPVSIAELSRFKTAREASQALRELADGKLDIIIGTHRLLQKDV 716

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           Q+ +L LV++DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I  
Sbjct: 717 QFSRLGLVVIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMSLEGLRDFSVIAT 776

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R  IKT +   +  D +I E L      G + Y++  +++  +  N R  + +   
Sbjct: 777 APQKRLAIKTFVTRFS--DGIIREALLREFKRGGQVYFLHNEVDTIE--NMRDKLGKL-- 830

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L E   + I + HG++ + D E VM  F      +L+ TT+IE GID   A+ III  AE
Sbjct: 831 LPE---ARIVVGHGQLKERDLERVMRDFTQRRANVLLCTTIIETGIDNPHANTIIINRAE 887

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEED 624
            FGLAQLHQLRGRVGR    +   LL H    L+K +  RL  ++  ++   GF +A  D
Sbjct: 888 KFGLAQLHQLRGRVGRSHHQAYAYLLTHDETALNKQARQRLEAIQMMDELGAGFYLAMHD 947

Query: 625 LKQRKEGEILGIKQSG 640
           L+ R  GE+LG  QSG
Sbjct: 948 LEIRGAGEVLGDSQSG 963


>gi|82701772|ref|YP_411338.1| transcription-repair coupling factor [Nitrosospira multiformis ATCC
            25196]
 gi|82409837|gb|ABB73946.1| transcription-repair coupling factor [Nitrosospira multiformis ATCC
            25196]
          Length = 1156

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 159/463 (34%), Positives = 238/463 (51%), Gaps = 33/463 (7%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            LL +  Q    +G    ++ +  +  +    F  T  Q +AI  ++ D++    M R++ 
Sbjct: 577  LLNIYAQRAARVGHAFRLKEQDYEAFVEGFGFEETPDQATAIAAVIDDLTSARPMDRLIC 636

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH++    ++    +I E     +
Sbjct: 637  GDVGFGKTEVALRAAFVAVADGRQVAVLVPTTLLAEQHFQ---NFSDRFGLIAEEWPVKI 693

Query: 360  PQAHR-------RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             +  R        +AL  +A GQ  I+IGTH L Q  +++  L LVI+DE+HRFGV+ + 
Sbjct: 694  AELSRFRSGKEQAQALAGLADGQIDIVIGTHKLIQKGVRFKNLGLVIIDEEHRFGVRHKE 753

Query: 413  KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            +L    +   VL +TATPIPRTL L+  G  D S I   P  R  IKT    +NR  E I
Sbjct: 754  QLKSLRSEVDVLTLTATPIPRTLALSLEGLRDFSVIATAPQRRLAIKTF---VNRFSEGI 810

Query: 473  ERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
             R   +  L  G + Y++  ++     S  +++ ++   L     + I I HG+M + + 
Sbjct: 811  IREACLRELKRGGQIYFLHNEV-----STIQTMHDKLARLLPE--ARIGIAHGQMREREL 863

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E VM  F      LL+ TT+IE GIDV  A+ III  A+ FGLAQLHQLRGRVGR    +
Sbjct: 864  EHVMKDFYQQRFNLLLCTTIIETGIDVPTANTIIIHRADKFGLAQLHQLRGRVGRSHHQA 923

Query: 591  SCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG-MPKF 644
               LL      L   +  RL  +++ E+   GF +A  DL+ R  GE+LG  QSG M + 
Sbjct: 924  YAYLLVPEEEALGTQARKRLEAVQSMEELGAGFYLAMHDLEIRGAGEVLGESQSGEMQEI 983

Query: 645  LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
                  L+ ++LE A +  K    ++PD+    G +  I L++
Sbjct: 984  GFT---LYANMLEAAVRSLKE--GKEPDMQHPLGVATEINLHV 1021


>gi|297538863|ref|YP_003674632.1| transcription-repair coupling factor [Methylotenera sp. 301]
 gi|297258210|gb|ADI30055.1| transcription-repair coupling factor [Methylotenera sp. 301]
          Length = 1142

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 152/431 (35%), Positives = 224/431 (51%), Gaps = 21/431 (4%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            +      PF  T  Q  AI+++++DM     M R++ GDVG GKT VAL A   AV  G 
Sbjct: 591  ETFCEGFPFEETPDQLEAIENVIKDMQSGRPMDRLVCGDVGFGKTEVALRAAFVAVMGGR 650

Query: 323  QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            Q  ++ P  +LA+QH+   K       I +  I+       +++AL  +  GQ  IIIGT
Sbjct: 651  QVAVLVPTTLLAEQHFNNFKDRFAEWPIKIAEISRFRTAKEQKEALAGLEAGQIDIIIGT 710

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L Q  +++  L LV++DE+HRFGV+Q+ +L        +L +TATPIPRTL +   G 
Sbjct: 711  HRLIQKDVKFKNLGLVVLDEEHRFGVRQKEQLKALRAEVDILTLTATPIPRTLSMAMEGL 770

Query: 443  IDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
             + S IT  P  R  IKT     +   I E + R       G + Y++  +++     + 
Sbjct: 771  REFSIITTPPQKRLSIKTFHTDYSEGIIREAVMR---EFKRGGQVYFLHNEVDTIH--SM 825

Query: 501  RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            R  +ER         + IA+ HG++ + + E VM  F N    LL+ TT+IE GIDV  A
Sbjct: 826  REKLERIVP-----DARIAVAHGQLRERELEHVMRDFYNQRYNLLLCTTIIETGIDVPTA 880

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
            + II+  A+ FGLAQ+HQLRGRVGR    +   LL  P   ++  +  RL  ++  ED  
Sbjct: 881  NTIILNKADMFGLAQMHQLRGRVGRSHHQAYAYLLTDPDRKITVQAQKRLDAIQLMEDLG 940

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             GF +A  DL+ R  GE+LG  QSG  + +     L+  +L  A K  K    ++PDL +
Sbjct: 941  AGFHLAMHDLEIRGAGELLGDSQSGEMQEIGFH--LYSDMLNHAVKQLK--AGKEPDLNA 996

Query: 676  VRGQSIRILLY 686
              G +  I L+
Sbjct: 997  PLGVTTEINLH 1007


>gi|229148463|ref|ZP_04276720.1| Transcription-repair-coupling factor [Bacillus cereus m1550]
 gi|228635005|gb|EEK91577.1| Transcription-repair-coupling factor [Bacillus cereus m1550]
          Length = 1176

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQH+E I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHHETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   I E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALIREAIER---ELARGGQVYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|300857300|ref|YP_003782284.1| putative transcription-repair coupling factor [Clostridium
           ljungdahlii DSM 13528]
 gi|300437415|gb|ADK17182.1| predicted transcription-repair coupling factor [Clostridium
           ljungdahlii DSM 13528]
          Length = 1173

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 218/378 (57%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q + I+DI QDM     M R+L GDVG GKT VA+ A   AV  G Q   + P
Sbjct: 625 PYEETPDQLTTIQDIKQDMESDKVMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVP 684

Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             ILAQQHY  F+++++ +  + +++I+     A ++ +++ +  G   I+IGTH + Q 
Sbjct: 685 TTILAQQHYNNFVQRFS-DFPVKIDMISRFRTTAQQKASIKAVKVGDVDILIGTHRILQK 743

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +Q+  L L+I+DE+ RFGV  + K+ +      VL ++ATPIPRTL ++ +G  DIS I
Sbjct: 744 DVQFKDLGLLIIDEEQRFGVSHKEKIKKIRKNVDVLTLSATPIPRTLHMSLVGARDISVI 803

Query: 449 TEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
              P  R PI+T ++  N  D++I + +   ++ G + Y++  ++E  KE    S + + 
Sbjct: 804 ETPPEERYPIQTYVVEYN--DQLIRDAILREINRGGQVYFVYNRVESIKE--MASYIAKL 859

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + +A+ HG+M + + E+++  F      +L+ATT+IE G+D+ + + +II +
Sbjct: 860 IP-----EAKVAVAHGQMQERELENIIVDFMKNEYNVLVATTIIETGMDIQNVNTMIIYD 914

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+QLRGRVGR   ++ C L Y     L++ +  RL  +K  TE   GF IA 
Sbjct: 915 ADKMGLSQLYQLRGRVGRTNRMAYCYLSYRRDKVLTEVAEKRLKAIKEFTELGSGFKIAL 974

Query: 623 EDLKQRKEGEILGIKQSG 640
           +DL+ R  G ++G  Q G
Sbjct: 975 KDLEIRGAGNMMGASQHG 992


>gi|228970242|ref|ZP_04130902.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228789477|gb|EEM37396.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|326937845|gb|AEA13741.1| transcription-repair coupling factor [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 1176

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|229170904|ref|ZP_04298507.1| Transcription-repair-coupling factor [Bacillus cereus MM3]
 gi|228612570|gb|EEK69789.1| Transcription-repair-coupling factor [Bacillus cereus MM3]
          Length = 1176

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|326803014|ref|YP_004320832.1| transcription-repair coupling factor [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650035|gb|AEA00218.1| transcription-repair coupling factor [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 1183

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 212/379 (55%), Gaps = 19/379 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  +IK+I  DM ++  M R+L GDVG GKT VA+ A   A+  G Q   + P
Sbjct: 623 PYPETDDQLRSIKEIKADMEKEKPMDRLLVGDVGFGKTEVAMRAAFKAMLDGKQVAFLVP 682

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHYE + +  ++    +++++     A ++  ++ +  G   ++IGTH L    
Sbjct: 683 TTVLAQQHYETMLERFKDYPFTIDLLSRFRSPAEQKHVIKGLKEGSVQLVIGTHRLLSKD 742

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L++VDE+ RFGV+ + +L        VL +TATPIPRTL ++ +G  D+S I 
Sbjct: 743 IKFLDLGLLVVDEEQRFGVKAKERLKALRKNVDVLTLTATPIPRTLNMSMMGVRDLSVIE 802

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             PA R P++T ++  N   I + IER    L+   + +++         +N +++ E+ 
Sbjct: 803 TPPANRFPVQTYVMEQNYGAIRDAIER---ELARNGQVFYLF--------NNVQNIQEKA 851

Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           N + E    + +AI HG+M     E V+  F  G   +L+ TT+IE GID+ + + +++E
Sbjct: 852 NFIEELVPKARVAIAHGQMHANQLEEVLMDFLAGDDDVLVTTTIIETGIDMPNVNTLLVE 911

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621
           +A+  GL+ L+QLRGRVGR   ++    +Y P   L++ S  RL+ LK+  +   GF IA
Sbjct: 912 DADRMGLSTLYQLRGRVGRSNRVAYAYFMYRPDKALNEASEKRLTALKDFTELGAGFKIA 971

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL  R  G +LG +Q G
Sbjct: 972 MRDLSIRGAGNLLGQEQHG 990


>gi|257066460|ref|YP_003152716.1| transcription-repair coupling factor [Anaerococcus prevotii DSM
           20548]
 gi|256798340|gb|ACV28995.1| transcription-repair coupling factor [Anaerococcus prevotii DSM
           20548]
          Length = 1170

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 136/379 (35%), Positives = 212/379 (55%), Gaps = 19/379 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T SQ  +I++I  DM     M R+L GDVG GKT VA+ A   A+  G Q   + P
Sbjct: 622 PYEETYSQIRSIEEIKNDMESDKPMDRLLCGDVGFGKTEVAIRAAFKAIMDGYQVAFLVP 681

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA QHYE IK+      + V++I+   P +  +  ++ +  G+  +IIGTH L    
Sbjct: 682 TTILANQHYETIKRRFDKFPVNVQVISRFNPGSKNKLIIKDLKAGKVDLIIGTHRLLSKD 741

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y  L L+I+DE+ RFGV+ + KL +  ++  VL ++ATPIPRTL ++  G  D+S + 
Sbjct: 742 VGYKNLGLLIIDEEQRFGVKHKEKLKELKSSLDVLTLSATPIPRTLQMSLSGIRDLSTLD 801

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           E P  R P+ T ++  +   I + IER    L+   + Y++  ++ +        + + +
Sbjct: 802 EAPEERMPVNTYVLEYDNGIIKQAIER---ELNRNGQVYFVYNRVND--------IEKLY 850

Query: 508 NSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           N L E    ++IAIIHGR+S    E  M  F +G   +L++TT+IE G+D+ + + III 
Sbjct: 851 NHLIELVPDANIAIIHGRISPKQIEKTMLEFIDGEIDILLSTTIIETGMDISNVNTIIIY 910

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621
           +++  GL QL+QL+GR+GRG   S     Y     LS+ S  RL  +++  D   G+ IA
Sbjct: 911 DSDMMGLGQLYQLKGRIGRGNRSSYAYFTYRTGKILSEISEKRLKSIRDFSDFGSGYKIA 970

Query: 622 EEDLKQRKEGEILGIKQSG 640
            +DL+ R  G +LG  QSG
Sbjct: 971 MKDLELRGAGNLLGESQSG 989


>gi|260427548|ref|ZP_05781527.1| transcription-repair coupling factor [Citreicella sp. SE45]
 gi|260422040|gb|EEX15291.1| transcription-repair coupling factor [Citreicella sp. SE45]
          Length = 1160

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 140/413 (33%), Positives = 230/413 (55%), Gaps = 24/413 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+S T  Q SAI+D+L DM+  N M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 603  PYSETDDQLSAIEDVLGDMTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVIAP 662

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QHY+   +  +   + V  ++  +  +   +  + I  G   I +GTHAL    
Sbjct: 663  TTLLARQHYKSFAERFRGFPLNVAPLSRFVSASEAARTRDGITKGTVDIAVGTHALLAKG 722

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I++  L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 723  IRFQNLGLLIIDEEQHFGVNHKERLKQLRSDIHVLTLTATPIPRTLQLSLSGVRDLSIIG 782

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  E      +E 
Sbjct: 783  TPPVDRLSIRTY---VSEFDPVTIR-EALLREHYRGGQSFYVVPRISDLPE------IEE 832

Query: 507  FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            F  L E     S  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++
Sbjct: 833  F--LREQVPEVSYVVAHGQMAAGELDEKMNAFYDGKYDVLLATTIVESGLDIPTANTMVV 890

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
              A+ FGL+QL+Q+RGRVGR +  +   +   P   L+  +  RL VL + +    GF +
Sbjct: 891  HRADMFGLSQLYQIRGRVGRSKTRAYAYMTTKPRAKLTDTAEKRLRVLGSLDTLGAGFTL 950

Query: 621  AEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQD 670
            A +DL  R  G +LG +QSG  +   + + Q  L +++ +I   + + +L QD
Sbjct: 951  ASQDLDIRGAGNLLGEEQSGQMRDVGYELYQQMLEEAIAKIKSGEMEGLLEQD 1003


>gi|228963154|ref|ZP_04124324.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796539|gb|EEM43977.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 1067

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 505 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 564

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 565 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGT 624

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 625 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 684

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 685 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 741

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 742 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 792

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 793 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 852

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 853 LGSGFKIAMRDLSIRGAGNLLGAEQHG 879


>gi|149177449|ref|ZP_01856053.1| transcription-repair coupling factor [Planctomyces maris DSM 8797]
 gi|148843782|gb|EDL58141.1| transcription-repair coupling factor [Planctomyces maris DSM 8797]
          Length = 1112

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 149/463 (32%), Positives = 242/463 (52%), Gaps = 19/463 (4%)

Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
           H PR +K    +  +++  A + +      +L ++ Q   + GI    +    ++   + 
Sbjct: 503 HVPRLSKLGTKSWASKKEKAAEAVRDMASDMLRLQAQRSGQPGISYPPDSHWQKEFEASF 562

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q  AI D+  DM +   M R++ GDVG GKT VA+ A   A++AG Q  ++ P
Sbjct: 563 PYTETSDQLHAISDVRHDMERAQPMDRLICGDVGYGKTEVAIRAAFKAIDAGKQVAVLVP 622

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH     +   +  I +E ++    +  +R  LE +A G   ++IGTH L Q  
Sbjct: 623 TTVLAEQHTRTFSERMADYPITIEGLSRFKSKKEQRAILEGMAAGSVDLVIGTHRLIQKD 682

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ RFGV+ +  L +      VL ++ATP+PRTL ++ LG  DIS +T
Sbjct: 683 IKFKDLGLLIIDEEQRFGVEAKEMLKRLRLQIDVLTLSATPVPRTLHMSLLGIRDISNLT 742

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R PI+T    I R D  + R  +V  L+   + Y++  ++      + +   +R 
Sbjct: 743 TAPRDRVPIETR---ITRFDPELIRHAMVRELNRNGQVYFVHNRVH-----DLQKYADRI 794

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             +     +SI I HG+M + + E+ M +F +G   + + TT+IE G+D+ +A+ I I +
Sbjct: 795 QQIVPE--ASIGIGHGQMKETELEAAMLNFVSGKVDIFVCTTIIESGLDIPNANTIFIHD 852

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A + GL+ LHQLRGRVGR    + C LL      L+  +  RL  ++   +   GF IA 
Sbjct: 853 AGNHGLSDLHQLRGRVGRSHHRAYCYLLLRDGQMLTPIAAKRLKAIEEYSELGAGFKIAM 912

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            DL+ R  G ILG +QSG         EL+  LLE A +  K+
Sbjct: 913 RDLEIRGAGNILGTEQSG--HIAAVGYELYCQLLENACRKLKN 953


>gi|229015456|ref|ZP_04172457.1| Transcription-repair-coupling factor [Bacillus cereus AH1273]
 gi|228745840|gb|EEL95841.1| Transcription-repair-coupling factor [Bacillus cereus AH1273]
          Length = 1176

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|260435284|ref|ZP_05789254.1| transcription-repair coupling factor [Synechococcus sp. WH 8109]
 gi|260413158|gb|EEX06454.1| transcription-repair coupling factor [Synechococcus sp. WH 8109]
          Length = 1203

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 140/450 (31%), Positives = 241/450 (53%), Gaps = 24/450 (5%)

Query: 237  QIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
            ++AL L++   + ++  G     +G    ++  + P+ PT  Q  A  D+ +DM ++  M
Sbjct: 595  KVALDLVKLYAERQQAAGFAFPTDGPWQVEMEESFPYDPTPDQLKATADVKRDMERQEPM 654

Query: 295  LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
             R++ GDVG GKT VA+ A+  A+ AG Q  ++AP  +LAQQH+  + +      I V +
Sbjct: 655  DRLVCGDVGFGKTEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVAL 714

Query: 355  ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
            +      + R+  L+ +  G    ++GTH L      + +L L++VDE+ RFGV Q+ K+
Sbjct: 715  LNRFRTASERKSILDGLKQGTIDAVVGTHQLLSKGASFQELGLLVVDEEQRFGVNQKEKI 774

Query: 415  TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                    VL ++ATPIPRTL ++  G  ++S IT  P  R+PIKT +  ++  + V   
Sbjct: 775  KVLRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLASLD-PEAVRSA 833

Query: 475  LKVVLSEGKKAYWICPQIEEKKE--SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
            ++  L  G + +++ P++E   E  +  R+++     L         + HG+M++ + E+
Sbjct: 834  IRQELDRGGQVFYVVPRVEGIDEVAAGLRAMLPGLKLL---------VAHGQMAEGELEN 884

Query: 533  VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
             M +F  G   +++ TT++E G+D+   + I+IE+A  FGLAQL+QLRGRVGR   I + 
Sbjct: 885  AMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGR-SGIQAH 943

Query: 593  ILLYHP---PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK--- 643
              L++P    LS  +  RL  ++       G+ +A  D++ R  G +LG++QSG  +   
Sbjct: 944  AWLFYPGNASLSDTARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVQQSGQMETIG 1003

Query: 644  FLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            F +    L +SL EI  +D   +     DL
Sbjct: 1004 FDLYMEMLQESLAEIQGQDIPSVEDTQVDL 1033


>gi|228937356|ref|ZP_04100003.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228976812|ref|ZP_04137225.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407]
 gi|228782908|gb|EEM31073.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407]
 gi|228822314|gb|EEM68295.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 1183

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 621 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 680

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 681 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGT 740

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 741 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 800

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 801 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 857

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 858 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 908

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 909 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 968

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 969 LGSGFKIAMRDLSIRGAGNLLGAEQHG 995


>gi|298244980|ref|ZP_06968786.1| transcription-repair coupling factor [Ktedonobacter racemifer DSM
           44963]
 gi|297552461|gb|EFH86326.1| transcription-repair coupling factor [Ktedonobacter racemifer DSM
           44963]
          Length = 1169

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 142/388 (36%), Positives = 219/388 (56%), Gaps = 23/388 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q++    P+  T  Q  AI+++  DM +   M R++ GDVG GKT VAL A   +V    
Sbjct: 619 QELEDAFPYEETPDQARAIEEVKADMERPKAMDRLVCGDVGYGKTEVALRAAFKSVLDQR 678

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  ILA QHY   K+  +   + VE+++    +  +++ LE +A G+  IIIGT
Sbjct: 679 QVAVLVPTTILALQHYNTFKERLKAYPVRVELLSRFRSEKEQKQVLEDLAMGKVDIIIGT 738

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  + ++ L L+IVDE+ RFGV  + +L Q      VL MTATPIPRTL ++ +  
Sbjct: 739 HRLLQKDVVFFHLGLLIVDEEQRFGVMHKERLKQLRNEVDVLTMTATPIPRTLHMSLVNL 798

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFR 501
            D+S I   P  R PI+T I   +  DE+I E +   +  G + +++  +++       +
Sbjct: 799 RDMSVIETPPQERLPIRTTIREYD--DELIREAILREIDRGGQVFFVHNRVQ-----GIQ 851

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            + ++   L     + I + HG+M++   E VM +F NG   +LI+TT+IE G+D+ +A+
Sbjct: 852 MIAQKLQKLVPE--ARITVGHGQMNEDMLEKVMLNFTNGEFDVLISTTIIENGLDIPNAN 909

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY------TRL-SVLKNT 614
            II+ NA +FGL+QL+QLRGRVGRG   +     Y    SKN+        RL ++ + T
Sbjct: 910 TIIVNNAAYFGLSQLYQLRGRVGRGTHQAYAHFFY----SKNARLTPIQEKRLRAIFEAT 965

Query: 615 E--DGFLIAEEDLKQRKEGEILGIKQSG 640
           E   GF IA +DL+ R  G +LG +QSG
Sbjct: 966 ELGAGFRIAMKDLEIRGAGNLLGGEQSG 993


>gi|226309690|ref|YP_002769584.1| transcription-repair coupling factor [Brevibacillus brevis NBRC
           100599]
 gi|226092638|dbj|BAH41080.1| transcription-repair coupling factor [Brevibacillus brevis NBRC
           100599]
          Length = 1182

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 135/378 (35%), Positives = 210/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  AI ++  DM +K  M R++ GDVG GKT VA+ A   AV  G Q  ++ P
Sbjct: 623 PYQETQDQLRAISEVKADMERKRPMDRLVCGDVGYGKTEVAIRAAFKAVMDGKQVAVLVP 682

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE  ++      I VE+++    +  +   L+ +  G   ++IGTH L    
Sbjct: 683 TTILAQQHYETFRERFAEYPIRVEVLSRFRSRKEQNATLKGLKEGTVDVVIGTHRLLSKD 742

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + + +L L+IVDE+ RFGV  + KL Q  T   V+ +TATPIPRTL ++ LG  D+S I 
Sbjct: 743 LTFRELGLLIVDEEQRFGVSHKEKLKQIKTNVDVMTLTATPIPRTLHMSMLGVRDLSVIE 802

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T ++  +   + E IER    ++   + +++  Q++         + E+ 
Sbjct: 803 TPPENRFPVQTYVMDYSPALVREAIER---EMARDGQVFFLYNQVQ-----GIEQMAEQI 854

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           + L     + IA+ HG+M++ + E V+  F  G   +L++TT+IE G+D+ + + +II N
Sbjct: 855 SMLVPD--ARIAVAHGQMNESELEGVILDFLEGNFDVLVSTTIIETGVDIPNVNTLIIYN 912

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+QLRGRVGR   I+     Y     L++ +  RL  +K  TE   GF IA 
Sbjct: 913 ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAM 972

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G +LG +Q G
Sbjct: 973 RDLSIRGAGNLLGAEQHG 990


>gi|228898807|ref|ZP_04063090.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
           4222]
 gi|228860832|gb|EEN05209.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
           4222]
          Length = 1176

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|111115454|ref|YP_710072.1| transcription-repair coupling factor [Borrelia afzelii PKo]
 gi|110890728|gb|ABH01896.1| transcription-repair coupling factor [Borrelia afzelii PKo]
          Length = 1124

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 138/380 (36%), Positives = 210/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q V+++P
Sbjct: 580 PYDETPDQITAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVVVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +     ++ L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNSEKRILKELKSGEIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FSCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE         +   
Sbjct: 760 IPPKNRVKIEAYLESFSELLIKHAIEN---ELSRDGQVFLVNHNIEE---------LHYL 807

Query: 508 NSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            +L E  T  + IAIIHG+++ I+ E++M  F     ++L+ATT+IE GID+ +A+ III
Sbjct: 808 KTLIEKLTPYARIAIIHGKLTGIEIENIMHDFIKKAYQILLATTIIENGIDIPNANTIII 867

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620
            NA  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    D   GF I
Sbjct: 868 NNANKFGLAQLYQLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSDLGSGFKI 927

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A +D++ R  G +LG +Q G
Sbjct: 928 AMKDMEIRGVGNLLGREQHG 947


>gi|325479334|gb|EGC82430.1| transcription-repair coupling factor [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 1167

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 133/380 (35%), Positives = 211/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T SQ  +I +I  DM     M R+L GDVG GKT VA+ A   A+  G Q   + P
Sbjct: 621 PFEETYSQIRSINEIKSDMESDKPMDRLLCGDVGYGKTEVAIRAAFKAIMDGYQVAFLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA QHYE I+K      + V++++    +      ++ +  G+  ++IGTH L    
Sbjct: 681 TTILANQHYETIRKRFAKFPVNVQMLSRFNSKNKNDLIIKDLKAGKIDLVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y KL L+I+DE+ RFGV+ + +L +  ++  VL ++ATPIPRTL ++  G  D+S + 
Sbjct: 741 VSYRKLGLLIIDEEQRFGVKHKEQLKEFKSSLDVLTLSATPIPRTLQMSLSGIRDLSTLD 800

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           E P  R P+ T +I  +   I + IER    +S G + Y++  ++   EK  ++ + +V 
Sbjct: 801 EPPEERMPVNTYVIEYDNSIIKQAIER---EISRGGQVYFVYNRVNDIEKLYNHIKDLVP 857

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     S++AIIHG++S    E  M  F +G   +L++TT+IE G+D+ + + +II
Sbjct: 858 E---------STVAIIHGKVSPKQIEKTMFEFIDGEIDVLLSTTIIETGMDISNVNTMII 908

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620
            +++  GL+QL+QL+GR+GRG   S     Y     L+  S  RL  +++  D   G+ I
Sbjct: 909 YDSDMMGLSQLYQLKGRIGRGNRSSYAYFTYRTGKILTDISEKRLKSIRDFSDFGSGYKI 968

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A +DL+ R  G +LG  QSG
Sbjct: 969 AMKDLELRGAGNLLGESQSG 988


>gi|228905850|ref|ZP_04069748.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
           200]
 gi|228853790|gb|EEM98549.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
           200]
          Length = 1176

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVAYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|218134568|ref|ZP_03463372.1| hypothetical protein BACPEC_02471 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989953|gb|EEC55964.1| hypothetical protein BACPEC_02471 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1177

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 208/377 (55%), Gaps = 15/377 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AI+D   DM     M R++ GDVG GKT VA+ A   AV+ G Q   + P
Sbjct: 625 PYEETSDQLAAIEDTKHDMQSTKIMDRLICGDVGYGKTEVAIRAAFKAVQDGKQVAYLVP 684

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQH+   ++  ++  + V +++        ++ +  +  G   I+IGTH L    
Sbjct: 685 TTILAQQHFNTFEQRMKDFPVKVAMLSRFRTPKEIKQTIADLRKGMVDIVIGTHRLLSKD 744

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++Y  L L+I+DE+ RFGV  + K+ +      VL ++ATPIPRTL ++ +G  D+S + 
Sbjct: 745 VEYKDLGLLIIDEEQRFGVSHKEKIKKLKENVDVLTLSATPIPRTLHMSLVGIRDMSVLE 804

Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           E P  R PI+T +   N  DE++ E +   L+ G + Y++  ++      N      R  
Sbjct: 805 EPPVDRMPIQTFVTEQN--DEMVREAINRELARGGQVYYVYNRVR-----NIDEAASRIQ 857

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L     +++A  HG+M +   E++M  F NG   +L++TT+IE G+D+ + + +IIE+A
Sbjct: 858 QLVPD--ANVAYAHGQMDEKTLEAIMYDFINGDIDVLVSTTIIETGLDISNVNTMIIEDA 915

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN-TE--DGFLIAEE 623
           E+ GL+QL+QLRGRVGR    +   LLY     L + +  RL  ++  TE   GF IA +
Sbjct: 916 ENLGLSQLYQLRGRVGRSNRTAYAFLLYRRGKMLKEVAEKRLHAIREFTELGSGFKIAMK 975

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G +LG  Q G
Sbjct: 976 DLEIRGAGNVLGEAQHG 992


>gi|229009563|ref|ZP_04166790.1| Transcription-repair-coupling factor [Bacillus mycoides DSM 2048]
 gi|228751707|gb|EEM01506.1| Transcription-repair-coupling factor [Bacillus mycoides DSM 2048]
          Length = 1176

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 212/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P
Sbjct: 621 PYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    
Sbjct: 681 TTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 741 VTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K      +V 
Sbjct: 801 TPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKADEISMLVP 857

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+
Sbjct: 858 ---------DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIV 908

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE   GF I
Sbjct: 909 FDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKI 968

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +Q G
Sbjct: 969 AMRDLSIRGAGNLLGAEQHG 988


>gi|216263646|ref|ZP_03435641.1| transcription-repair coupling factor [Borrelia afzelii ACA-1]
 gi|215980490|gb|EEC21311.1| transcription-repair coupling factor [Borrelia afzelii ACA-1]
          Length = 1124

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 138/380 (36%), Positives = 210/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q V+++P
Sbjct: 580 PYDETPDQITAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVVVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +     ++ L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNSEKRILKELKSGEIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FSCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE         +   
Sbjct: 760 IPPKNRVKIEAYLESFSELLIKHAIEN---ELSRDGQVFLVNHNIEE---------LHYL 807

Query: 508 NSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            +L E  T  + IAIIHG+++ I+ E++M  F     ++L+ATT+IE GID+ +A+ III
Sbjct: 808 KTLIEKLTPYARIAIIHGKLTGIEIENIMHDFIKKAYQILLATTIIENGIDIPNANTIII 867

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620
            NA  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    D   GF I
Sbjct: 868 NNANKFGLAQLYQLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSDLGSGFKI 927

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A +D++ R  G +LG +Q G
Sbjct: 928 AMKDMEIRGVGNLLGREQHG 947


>gi|75759615|ref|ZP_00739701.1| Transcription-repair coupling factor [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74492906|gb|EAO56036.1| Transcription-repair coupling factor [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 1186

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 624 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 683

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 684 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGT 743

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 744 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 803

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 804 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 860

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 861 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 911

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 912 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 971

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 972 LGSGFKIAMRDLSIRGAGNLLGAEQHG 998


>gi|327438085|dbj|BAK14450.1| transcription-repair coupling factor [Solibacillus silvestris
           StLB046]
          Length = 1170

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 135/378 (35%), Positives = 210/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q   I ++ +DM ++  M R++ GDVG GKT VA+ A   A+  G Q   + P
Sbjct: 618 PYEETEDQLRTIAEVKKDMERERPMDRLVCGDVGYGKTEVAIRAAFKAILDGKQVAFLVP 677

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE I K  ++  I V +++    +  + + L+ +  G   I+IGTH +    
Sbjct: 678 TTILAQQHYETISKRFEDYAINVGLLSRFRSKKQQTETLKGLKEGTVDIVIGTHRILSKD 737

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y  L L+IVDE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  D+S I 
Sbjct: 738 VVYQDLGLLIVDEEQRFGVTHKEKIKQLRTNVDVLTLTATPIPRTLHMSMVGVRDLSVIE 797

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T ++  N   + E IER    ++ G + +++  ++E     +    VE  
Sbjct: 798 TPPQNRFPVQTYVMEHNGALVREAIER---EMARGGQVFYLYNRVE-----DITRRVEEI 849

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L     + +A  HG+M++   ESV+ SF  G   +L+ TT+IE G+D+ + + +I+ +
Sbjct: 850 QMLVP--DARVAFAHGKMTEAKLESVILSFIEGEYDVLVTTTIIETGVDIPNVNTLIVHD 907

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+QLRGRVGR   I+    +Y     L++ +  RL  +K  TE   GF IA 
Sbjct: 908 ADRMGLSQLYQLRGRVGRSNRIAYAYFMYERDKVLTEVAEQRLQAVKEFTELGSGFKIAM 967

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G +LG +Q G
Sbjct: 968 RDLSIRGAGNLLGAQQHG 985


>gi|218895189|ref|YP_002443600.1| transcription-repair coupling factor [Bacillus cereus G9842]
 gi|218545395|gb|ACK97789.1| transcription-repair coupling factor [Bacillus cereus G9842]
          Length = 1176

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 21/387 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  +I +I +DM +   M R+L GDVG GKT VA+ A   A+    
Sbjct: 614 QEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEK 673

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+ P  ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGT
Sbjct: 674 QVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGT 733

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H +    + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG 
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793

Query: 443 IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKES 498
            D+S I   P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K  
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKAD 850

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +V           + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ 
Sbjct: 851 EISMLVP---------DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIP 901

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE 615
           + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE
Sbjct: 902 NVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTE 961

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL  R  G +LG +Q G
Sbjct: 962 LGSGFKIAMRDLSIRGAGNLLGAEQHG 988


>gi|229053900|ref|ZP_04195335.1| Transcription-repair-coupling factor [Bacillus cereus AH603]
 gi|228721441|gb|EEL72961.1| Transcription-repair-coupling factor [Bacillus cereus AH603]
          Length = 1176

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 212/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P
Sbjct: 621 PYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    
Sbjct: 681 TTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 741 VTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K      +V 
Sbjct: 801 TPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKADEISMLVP 857

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+
Sbjct: 858 ---------DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIV 908

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE   GF I
Sbjct: 909 FDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKI 968

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +Q G
Sbjct: 969 AMRDLSIRGAGNLLGAEQHG 988


>gi|270308451|ref|YP_003330509.1| transcription-repair coupling factor (superfamily II helicase)
           [Dehalococcoides sp. VS]
 gi|270154343|gb|ACZ62181.1| transcription-repair coupling factor (superfamily II helicase)
           [Dehalococcoides sp. VS]
          Length = 1154

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 135/385 (35%), Positives = 209/385 (54%), Gaps = 17/385 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q++  + P+  T  Q  A+ DI +DM +   M R++ GDVG GKT VA+ A   AV  G 
Sbjct: 604 QEMEASFPYVETPDQLKALCDIKEDMEKTRPMDRLILGDVGYGKTEVAIRAAFKAVMDGK 663

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY   ++      + VE+++    Q+ +++ +E +  G+  I IGT
Sbjct: 664 QVAVLVPTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQKEVVENMEKGEVDICIGT 723

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  I++  L LVI+DE+ RFGV  +    +      VL ++ATPIPRTL ++ +G 
Sbjct: 724 HRLLQADIKFKDLGLVIIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSMVGV 783

Query: 443 IDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D+S I   P  R PIKTV+   +   I E I R    +    + +++  ++        
Sbjct: 784 RDMSVIETPPGERLPIKTVVAAFDERLIREAILR---EMERNGQVFFVSNRV-----MGI 835

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             + ER   L     + I I HG+M++    +VM  F      +L+ TT+IE G+DV +A
Sbjct: 836 NLLAERIQKLVPE--ARIGIGHGQMAEDKLAAVMADFVRYELDVLVCTTIIESGVDVPNA 893

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
           + +II  A+ FGL QL+QLRGRVGR  +++    LY     LS ++  RL  +    +  
Sbjct: 894 NTLIINRADRFGLTQLYQLRGRVGRSSQLAYAYFLYDKEKHLSGDAEKRLKTIYEAAELG 953

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640
            G+ IA +DL+ R  G +LG+KQSG
Sbjct: 954 AGYGIAMKDLEIRGAGTLLGVKQSG 978


>gi|126653275|ref|ZP_01725386.1| transcription-repair coupling factor [Bacillus sp. B14905]
 gi|126589949|gb|EAZ84078.1| transcription-repair coupling factor [Bacillus sp. B14905]
          Length = 1169

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 135/377 (35%), Positives = 212/377 (56%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T+ Q  +I ++ +DM ++  M R++ GDVG GKT VA+ A   A++ G Q   + P 
Sbjct: 619 YEETEDQLRSIVEVKRDMERERPMDRLVCGDVGYGKTEVAIRAAFKAIQDGKQVAFLVPT 678

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILAQQHYE I++  Q+  I V +++    +  +   L+ +  GQ  I+IGTH +    +
Sbjct: 679 TILAQQHYETIRERFQDFAINVGLLSRFRSKKEQTATLKGLKEGQVDIVIGTHRILSKDL 738

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+IVDE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  D+S I  
Sbjct: 739 LFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSMVGVRDLSVIET 798

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            PA R P++T ++  +   + E IER    ++ G + +++  ++E+         VE   
Sbjct: 799 PPANRFPVQTYVMEHSGALVREAIER---EMARGGQVFYLYNRVEDMARK-----VEEIQ 850

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L     + I   HG+MS+ + ESV+ SF  G   +L+ TT+IE G+D+ + + +I+ +A
Sbjct: 851 VLVPE--ARIGHAHGKMSESELESVILSFLEGDYDVLVTTTIIETGVDIPNVNTLIVHDA 908

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623
           +  GLAQL+QLRGRVGR   ++    +Y     L+  +  RL  +K  TE   GF IA  
Sbjct: 909 DRMGLAQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELGSGFKIAMR 968

Query: 624 DLKQRKEGEILGIKQSG 640
           DL  R  G +LG +Q G
Sbjct: 969 DLSIRGAGNLLGAQQHG 985


>gi|254514466|ref|ZP_05126527.1| transcription-repair coupling factor [gamma proteobacterium NOR5-3]
 gi|219676709|gb|EED33074.1| transcription-repair coupling factor [gamma proteobacterium NOR5-3]
          Length = 1152

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 141/430 (32%), Positives = 223/430 (51%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R+       +A Q+  +  R++ ++  G+      +  ++     PF  T  Q 
Sbjct: 550 QWDKAQRKAREKANDVAAQLLEVYARREARQ--GVQFTDPEEDYERFAAGFPFEETPDQA 607

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI+ + +DM     M R++ GDVG GKT VA+ A   A     Q  ++ P  +LAQQHY
Sbjct: 608 AAIEAVERDMFAAGVMDRLVCGDVGFGKTEVAMRAAFIATANQRQVAVLVPTTLLAQQHY 667

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              +    N  + +E+I+     +  +    R+  G   I+IGTH L Q  I++  L L+
Sbjct: 668 NSFRDRFANWPVKIEVISRFRAASDTKDVARRLEAGDVDILIGTHKLIQSDIRFADLGLL 727

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+Q+  +        +L +TATPIPRTL +   G  D+S I   PA R  I
Sbjct: 728 IIDEEHRFGVRQKDSIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSI 787

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           KT +   +   I E + R  +    G + +++         +  R++ +R  +L E    
Sbjct: 788 KTFVREQDHGLIKEAVLRETL---RGGQVFYV--------HNEVRTIEQRAAALRELLPD 836

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            SI + HG+M +   E VM  F +    +LI +T+IE GID+ +A+ III+ A+ FGLAQ
Sbjct: 837 LSIVVAHGQMHETQLERVMSDFYHQRHHILICSTIIETGIDIPNANTIIIDRADKFGLAQ 896

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   LL  P   ++ ++  RL  ++   +   G+ +A  DL+ R  
Sbjct: 897 LHQLRGRVGRSHHQAYAYLLCPPASAMTTDASKRLEAIEAAGELGAGYQLATHDLEIRGA 956

Query: 631 GEILGIKQSG 640
           GE+LG +QSG
Sbjct: 957 GELLGDEQSG 966


>gi|311740779|ref|ZP_07714606.1| transcription-repair coupling factor [Corynebacterium
            pseudogenitalium ATCC 33035]
 gi|311304299|gb|EFQ80375.1| transcription-repair coupling factor [Corynebacterium
            pseudogenitalium ATCC 33035]
          Length = 1213

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 132/429 (30%), Positives = 221/429 (51%), Gaps = 19/429 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G   + +     ++  N PF  T+ Q 
Sbjct: 588  DWKNTKKKARAAVREIAGELVELYAKRQAAP--GHQFSPDNPWQAEMEDNFPFVETEDQM 645

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  +  DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH+
Sbjct: 646  LAIDAVKHDMESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGMQVAVLVPTTLLAQQHF 705

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + +E+++    +   +   + +A G   I++GTH L Q  + +  L L+
Sbjct: 706  DTFSERMTGFPVKIEVLSRFTSKKEAKDIFKGLADGSVDIVVGTHRLLQTGVHWKNLGLI 765

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +     +  VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 766  VVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 825

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
             T +       +V   ++  L    + ++I  ++   EKK    R +V           +
Sbjct: 826  LTYVGAYED-KQVAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPE---------A 875

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HG+M++   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QL
Sbjct: 876  RVVVAHGQMNEEVLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 935

Query: 577  HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G
Sbjct: 936  HQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 995

Query: 632  EILGIKQSG 640
             +LG +QSG
Sbjct: 996  NVLGAQQSG 1004


>gi|114330160|ref|YP_746382.1| transcription-repair coupling factor [Nitrosomonas eutropha C91]
 gi|114307174|gb|ABI58417.1| transcription-repair coupling factor [Nitrosomonas eutropha C91]
          Length = 1154

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 155/429 (36%), Positives = 226/429 (52%), Gaps = 27/429 (6%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   A+  G Q  I+ P 
Sbjct: 606  FEETPDQAAAIHAVIQDMVSGKPMDRLICGDVGFGKTEVALRAAFIAIADGRQVAILVPT 665

Query: 331  GILAQQHYE-FIKKY---TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
             +LA+QHY+ F  ++        + +  ++       + +AL+ +A G   IIIGTH L 
Sbjct: 666  TLLAEQHYQSFSDRFGLIADQWPVKIAELSRFRSTKEQSEALQSLAQGTTDIIIGTHKLI 725

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            QD +++  L LVI+DE+HRFGV+Q+ +L +      VL +TATPIPRTL ++  G  D S
Sbjct: 726  QDKVKFKNLGLVIIDEEHRFGVRQKEQLKKLRAEVDVLTLTATPIPRTLAMSLEGLRDFS 785

Query: 447  KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
             I   P  R  I+T + P     I E   R    L  G + Y++  ++     S  +++ 
Sbjct: 786  VIATAPQRRLAIRTFVHPYTEGIIREACLR---ELKRGGQIYFLYNEV-----STIQNMY 837

Query: 505  ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             +   L     + I I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II
Sbjct: 838  TKLIKLLPE--AKINIAHGQMRESELEHVMRDFYQQRFNMLLCTTIIETGIDVPTANTII 895

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
            I  A+ FGLAQLHQLRGRVGR    +   LL      L+  +  RL  ++  E+   GF 
Sbjct: 896  IHRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEKAALTIQAIRRLEAIQAMEELGSGFY 955

Query: 620  IAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            +A  DL+ R  G +LG  QSG M +   +   L++SLL+ A K  K     +PD+    G
Sbjct: 956  LAMHDLEIRGAGAVLGDSQSGEMQEVGFS---LYNSLLDAAIKSLK--AGHEPDMQQPLG 1010

Query: 679  QSIRILLYL 687
             S  + L++
Sbjct: 1011 ISTEVRLHV 1019


>gi|160939694|ref|ZP_02087042.1| hypothetical protein CLOBOL_04586 [Clostridium bolteae ATCC BAA-613]
 gi|158437485|gb|EDP15249.1| hypothetical protein CLOBOL_04586 [Clostridium bolteae ATCC BAA-613]
          Length = 1200

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 141/428 (32%), Positives = 224/428 (52%), Gaps = 17/428 (3%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EW  +  R R A  E+    + L   R++   + G     +    ++     P+  T  Q
Sbjct: 601  EWNKTKTRVRGAVQEIARDLVKLYAARQE---KAGFQYGTDTVWQREFEELFPYDETDDQ 657

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              AI  + +DM  +  M R++ GDVG GKT VAL A   AV+   Q V + P  ILAQQH
Sbjct: 658  MDAIDAVKKDMESRRIMDRLICGDVGYGKTEVALRAAFKAVQDSKQVVYLVPTTILAQQH 717

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y    +  ++  + V++++     A +++ LE +  G   I+IGTH +    +Q+  L L
Sbjct: 718  YNTFVQRMKDFPVRVDMLSRFCTPARQKRTLEDLRKGMVDIVIGTHRVLSKDMQFKDLGL 777

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +I+DE+ RFGV  + K+        VL +TATPIPRTL ++  G  D+S + E P  R P
Sbjct: 778  LIIDEEQRFGVAHKEKIKHLKENVDVLTLTATPIPRTLHMSLAGIRDMSVLEEPPVDRTP 837

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            I+T ++  N  + V E +   L+   + Y++  ++     ++   V  R  +L      +
Sbjct: 838  IQTYVMEYNE-EMVREAINRELARNGQVYYVYNRV-----TDIDEVAGRVQALVPDAVVT 891

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
             A  HG+M + + E +M  F NG   +L++TT+IE G+D+ +A+ +II +A+  GL+QL+
Sbjct: 892  FA--HGQMREHELERIMADFINGEIDVLVSTTIIETGLDISNANTMIIHDADRMGLSQLY 949

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGE 632
            QLRGRVGR    S   L+Y     L + +  RL  ++  TE   G  IA  DL+ R  G 
Sbjct: 950  QLRGRVGRSNRTSYAFLMYKRDKLLREEAEKRLQAIREFTELGSGIKIAMRDLEIRGAGN 1009

Query: 633  ILGIKQSG 640
            +LG +Q G
Sbjct: 1010 VLGAEQHG 1017


>gi|26247258|ref|NP_753298.1| transcription-repair coupling factor [Escherichia coli CFT073]
 gi|26107659|gb|AAN79858.1|AE016759_132 Transcription-repair coupling factor [Escherichia coli CFT073]
          Length = 951

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 128/334 (38%), Positives = 185/334 (55%), Gaps = 14/334 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   
Sbjct: 612 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 671

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+I+       + + L  +A G+  I+IGT
Sbjct: 672 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 731

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 732 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 791

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            D+S I   PA R  +KT    +   D ++ R + +L E   G + Y++   +E     N
Sbjct: 792 RDLSIIATPPARRLAVKTF---VREYDSLVVR-EAILREILRGGQVYYLYNDVE-----N 842

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER   L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  
Sbjct: 843 IQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 900

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           A+ IIIE A+HFGLAQLHQLRGRVGR      C+
Sbjct: 901 ANTIIIERADHFGLAQLHQLRGRVGRSXPPGICM 934


>gi|312796442|ref|YP_004029364.1| transcription-repair coupling factor [Burkholderia rhizoxinica HKI
           454]
 gi|312168217|emb|CBW75220.1| Transcription-repair coupling factor [Burkholderia rhizoxinica HKI
           454]
          Length = 1165

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 140/378 (37%), Positives = 202/378 (53%), Gaps = 19/378 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P 
Sbjct: 613 FDETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLSPT 672

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH +       +  + +  ++          A++ I  G   I+IGTH L    +
Sbjct: 673 TLLAEQHVQTFTDRFADWPVRIAELSRFKSTKEVNAAIQAINDGNVDIVIGTHKLLSADV 732

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I  
Sbjct: 733 RFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIAT 792

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
            P  R  IKT +      D VI E +   L  G + Y++  ++E  + + +   ++V   
Sbjct: 793 APQKRLAIKTFVR--REEDSVIREAMLRELKRGGQVYFLHNEVESIDSRRAALEALVPE- 849

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IA+ HG+M + D E VM  F      +L+ TT+IE GIDV  A+ I+I  
Sbjct: 850 --------ARIAVAHGQMHERDLERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHR 901

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A+ FGLAQLHQLRGRVGR    +   LL + P  LS+ +  RL  ++  E+   GF +A 
Sbjct: 902 ADKFGLAQLHQLRGRVGRSHHQAYAYLLVNDPQSLSRQAQRRLEAIQQMEELGAGFYLAM 961

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  GE+LG KQSG
Sbjct: 962 HDLEIRGTGEVLGEKQSG 979


>gi|255325397|ref|ZP_05366501.1| transcription-repair coupling factor [Corynebacterium
            tuberculostearicum SK141]
 gi|255297483|gb|EET76796.1| transcription-repair coupling factor [Corynebacterium
            tuberculostearicum SK141]
          Length = 1212

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 132/429 (30%), Positives = 221/429 (51%), Gaps = 19/429 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G   + +     ++  N PF  T+ Q 
Sbjct: 588  DWKNTKKKARAAVREIAGELVELYAKRQAAP--GHQFSPDNPWQAEMEDNFPFVETEDQM 645

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  +  DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH+
Sbjct: 646  LAIDAVKHDMESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGMQVAVLVPTTLLAQQHF 705

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + +E+++    +   +   + +A G   I++GTH L Q  + +  L L+
Sbjct: 706  DTFSERMTGFPVKIEVLSRFTSKKEAKDIFKGLADGSVDIVVGTHRLLQTGVHWKNLGLI 765

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +     +  VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 766  VVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 825

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
             T +       +V   ++  L    + ++I  ++   EKK    R +V           +
Sbjct: 826  LTYVGAYED-KQVAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPE---------A 875

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HG+M++   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QL
Sbjct: 876  RVVVAHGQMNEEVLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 935

Query: 577  HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G
Sbjct: 936  HQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 995

Query: 632  EILGIKQSG 640
             +LG +QSG
Sbjct: 996  NVLGAQQSG 1004


>gi|229131061|ref|ZP_04259974.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST196]
 gi|229165042|ref|ZP_04292838.1| Transcription-repair-coupling factor [Bacillus cereus AH621]
 gi|228618427|gb|EEK75456.1| Transcription-repair-coupling factor [Bacillus cereus AH621]
 gi|228652398|gb|EEL08322.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST196]
          Length = 1176

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 212/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P
Sbjct: 621 PYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    
Sbjct: 681 TTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 741 VTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K      +V 
Sbjct: 801 TPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKADEISMLVP 857

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+
Sbjct: 858 ---------DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIV 908

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE   GF I
Sbjct: 909 FDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKI 968

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +Q G
Sbjct: 969 AMRDLSIRGAGNLLGAEQHG 988


>gi|157964740|ref|YP_001499564.1| transcription-repair coupling factor [Rickettsia massiliae MTU5]
 gi|157844516|gb|ABV85017.1| Transcription-repair coupling factor [Rickettsia massiliae MTU5]
          Length = 1134

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 147/441 (33%), Positives = 239/441 (54%), Gaps = 39/441 (8%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           +IAL L++   K+++    +VE  + +  K   N PFS T+ Q +AI DI +D+     M
Sbjct: 553 EIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLTAINDIKEDLRNGMLM 612

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346
            R++ GDVG GKT VA+ A+    ++      Q  ++ P  IL  QH+    E  K +  
Sbjct: 613 DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGL 672

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           N + +  +I+    +  R +    +  G+ +IIIGTH+L   +I+++ L L+I+DE+  F
Sbjct: 673 NIKQLSRVISSKEAKIIRSE----LESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHF 728

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  ++T ++P  
Sbjct: 729 GVGQKELLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMP-- 786

Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAII 521
             D VI R   +L E   G +++++ P+I+  E  E   + +V            S  I 
Sbjct: 787 -FDPVIIR-DALLREHFRGGRSFYVVPRIKDIEDIEKQLKQIVPEL---------SYKIA 835

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M+    + VM  F  G   +L++TT+IE GID+ +A+ +II  A+  GL+QL+QLRG
Sbjct: 836 HGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHKADMLGLSQLYQLRG 895

Query: 582 RVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636
           R+GRG+      L    H  ++ +S  RL +++N+     GF IA  D+  R  G ++G 
Sbjct: 896 RIGRGKMRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGE 955

Query: 637 KQSGMPKFLIAQPELHDSLLE 657
           +QSG  K +    EL+  +LE
Sbjct: 956 EQSGQIKEV--GTELYQEMLE 974


>gi|212637897|ref|YP_002314417.1| transcription-repair coupling factor (helicase, mfd) [Anoxybacillus
            flavithermus WK1]
 gi|212559377|gb|ACJ32432.1| Transcription-repair coupling factor (helicase, mfd) [Anoxybacillus
            flavithermus WK1]
          Length = 1189

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 134/399 (33%), Positives = 220/399 (55%), Gaps = 21/399 (5%)

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            G   + + ++ ++     P+  T+ Q  +I++I +DM  +  M R+L GDVG GKT VAL
Sbjct: 622  GYAFSPDNEMQREFEAAFPYQETEDQLRSIREIKRDMESERPMDRLLCGDVGYGKTEVAL 681

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A   A+  G Q   + P  ILAQQHYE +++  Q   I V +++    +  + + ++ +
Sbjct: 682  RAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGYPIHVSLLSRFRTKKQQTETIQGL 741

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
              G   ++IGTH L    + +  L L+I+DE+ RFGV  + K+ Q  T   VL +TATPI
Sbjct: 742  KDGTIDMVIGTHRLLSKDVSFKDLGLLIIDEEQRFGVAHKEKIKQLKTNIDVLTLTATPI 801

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWIC 489
            PRTL ++ +G  D+S I   P  R P++T ++  + I   E IER    ++ G + +++ 
Sbjct: 802  PRTLHMSLIGVRDLSVIETPPENRFPVQTYVMEYSPIIVREAIER---EMARGGQVFFLY 858

Query: 490  PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             ++E  ++K     ++V           + +   HGRMS+ + E+VM +F  G   +L++
Sbjct: 859  NRVEDIDRKAEEISALVP---------DARVTYAHGRMSEHELEAVMLAFLEGQYDVLVS 909

Query: 548  TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605
            TT+IE G+D+ + + +I+ +A+  GL+QL+QLRGRVGR   I+     Y     L++ + 
Sbjct: 910  TTIIETGVDIPNVNTLIVYDADKMGLSQLYQLRGRVGRSNRIAYAYFTYRKDKVLNEIAE 969

Query: 606  TRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641
             RL  +K  TE   GF IA  DL  R  G +LG +Q G 
Sbjct: 970  KRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAQQHGF 1008


>gi|169825685|ref|YP_001695843.1| transcription-repair coupling factor [Lysinibacillus sphaericus
           C3-41]
 gi|168990173|gb|ACA37713.1| Transcription-repair coupling factor [Lysinibacillus sphaericus
           C3-41]
          Length = 1169

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 135/377 (35%), Positives = 212/377 (56%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T+ Q  +I ++ +DM ++  M R++ GDVG GKT VA+ A   A++ G Q   + P 
Sbjct: 619 YEETEDQLRSIVEVKRDMERERPMDRLVCGDVGYGKTEVAIRAAFKAIQDGKQVAFLVPT 678

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILAQQHYE I++  Q+  I V +++    +  +   L+ +  GQ  I+IGTH +    +
Sbjct: 679 TILAQQHYETIRERFQDFAINVGLLSRFRSKKEQTATLKGLKEGQVDIVIGTHRILSKDL 738

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+IVDE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  D+S I  
Sbjct: 739 IFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSMVGVRDLSVIET 798

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            PA R P++T ++  +   + E IER    ++ G + +++  ++E+         VE   
Sbjct: 799 PPANRFPVQTYVMEHSGALVREAIER---EMARGGQVFYLYNRVEDMARK-----VEEIQ 850

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L     + I   HG+MS+ + ESV+ SF  G   +L+ TT+IE G+D+ + + +I+ +A
Sbjct: 851 VLVPE--ARIGHAHGKMSETELESVILSFLEGDYDVLVTTTIIETGVDIPNVNTLIVHDA 908

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623
           +  GLAQL+QLRGRVGR   ++    +Y     L+  +  RL  +K  TE   GF IA  
Sbjct: 909 DRMGLAQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELGSGFKIAMR 968

Query: 624 DLKQRKEGEILGIKQSG 640
           DL  R  G +LG +Q G
Sbjct: 969 DLSIRGAGNLLGAQQHG 985


>gi|163938061|ref|YP_001642945.1| transcription-repair coupling factor [Bacillus weihenstephanensis
           KBAB4]
 gi|163860258|gb|ABY41317.1| transcription-repair coupling factor [Bacillus weihenstephanensis
           KBAB4]
          Length = 1176

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 212/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P
Sbjct: 621 PYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    
Sbjct: 681 TTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + Y  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 741 VTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIE 800

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P  R P++T ++  N   + E IER    L+ G + Y++  ++E  E+K      +V 
Sbjct: 801 TPPENRFPVQTYVVEYNPALMREAIER---ELARGGQIYFLYNRVEDIERKADEISMLVP 857

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +   HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+
Sbjct: 858 ---------DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIV 908

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            +A+  GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K  TE   GF I
Sbjct: 909 FDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKI 968

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +Q G
Sbjct: 969 AMRDLSIRGAGNLLGAEQHG 988


>gi|116750898|ref|YP_847585.1| transcription-repair coupling factor [Syntrophobacter fumaroxidans
            MPOB]
 gi|116699962|gb|ABK19150.1| transcription-repair coupling factor [Syntrophobacter fumaroxidans
            MPOB]
          Length = 1189

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 142/429 (33%), Positives = 225/429 (52%), Gaps = 21/429 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W +  ++ L   E +A ++  L  ++Q  +  G   +      QK      +  T  Q  
Sbjct: 592  WETAKKKALESAERVAEELLSLYAKRQIGE--GFRFSPPDSYFQKFEATFSYEETPDQMR 649

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI D+L DM+ +  M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QHY+
Sbjct: 650  AIDDVLDDMASRRPMDRLICGDVGYGKTEVALRAAFKAVMDGKQVAMLVPTTVLAEQHYQ 709

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +  +   ++VE ++     A +   L+ + +G   +++GTH L Q  + +  L L++
Sbjct: 710  SFTERFEGFPVVVETLSRFKTPAQQTLVLKGLKNGTVDVVVGTHRLLQSDVAFRDLGLLV 769

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+ + ++ +   +  VL +TATPIPRTL +   G  D+S I   P  R  I+
Sbjct: 770  IDEEHRFGVKHKERMKEMRVSVDVLTLTATPIPRTLHMALAGIRDLSTIETPPQDRHAIE 829

Query: 460  TVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TS 516
            T I    + DE   R  V   L    + +++         ++ +S+ +  N++      +
Sbjct: 830  TFIC---KYDEFTIREAVYRELRRSGQVFFV--------HNHVQSIYQTANAIGRLIPEA 878

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             IA+ HG+M + D E VM  F      +L+ TT+IE G+D+  A+ III  A+ FGLAQ+
Sbjct: 879  KIAVAHGQMKERDLEKVMLDFIRRKIDVLVCTTIIESGLDIPAANTIIINRADKFGLAQI 938

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            +QLRGRVGR  E +   LL      +S+++  RL  L +  +   GF IA  DL+ R  G
Sbjct: 939  YQLRGRVGRSSEQAFAYLLIPGEHLISRDAQKRLRALLDFSELGAGFKIALNDLQIRGGG 998

Query: 632  EILGIKQSG 640
             ILG  QSG
Sbjct: 999  TILGSSQSG 1007


>gi|332519222|ref|ZP_08395689.1| transcription-repair coupling factor [Lacinutrix algicola 5H-3-7-4]
 gi|332045070|gb|EGI81263.1| transcription-repair coupling factor [Lacinutrix algicola 5H-3-7-4]
          Length = 1120

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 229/431 (53%), Gaps = 16/431 (3%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E G   N +  +  ++  +  +  T  Q  A  DI  DM  +  M R++ GDVG GKT
Sbjct: 538 KLEKGYQYNTDSYLQHELEASFIYEDTPDQIKATADIKADMESERPMDRLICGDVGFGKT 597

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   AV+ G Q  ++ P  ILA QH++   +  +   + V+ +        +R+ 
Sbjct: 598 EVAIRAAFKAVDNGKQVAVLVPTTILAFQHHKTFSERLKEFPVTVDYLNRFRTAKEKRET 657

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           +E++  G   IIIGTH L    +++  L L+IVDE+ +FGV  + KL        VL +T
Sbjct: 658 IEKLEKGHVDIIIGTHQLVNKKVKFKDLGLLIVDEEQKFGVAVKEKLKTLKDNVDVLTLT 717

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL  + +   D+S IT  P  R PI++ +I  N  + + + +   +  G + ++
Sbjct: 718 ATPIPRTLQFSLMAARDLSVITTPPPNRFPIESNVIRFNE-ETIRDAVSYEIQRGGQIFF 776

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I  +IE  KE     +++R         + I I HG++     E +M +F NG   +L++
Sbjct: 777 IHNRIENIKE--VAGMLQRLVP-----DAKIGIGHGQLDGKKLEELMLAFINGDFDVLVS 829

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSY 605
           TT+IE G+DV +A+ I I NA +FGL+ LHQ+RGRVGR  + + C  +   +  ++ ++ 
Sbjct: 830 TTIIESGLDVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPGYDAMTPDAR 889

Query: 606 TRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
            R+  L+       GF IA +DL+ R  G++LG +QSG      F   Q  L++++ E+ 
Sbjct: 890 KRIQALEQFTALGSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELK 949

Query: 660 RKDAKHILTQD 670
             + K + ++D
Sbjct: 950 ETEFKDLYSED 960


>gi|85858740|ref|YP_460942.1| transcription-repair coupling factor [Syntrophus aciditrophicus SB]
 gi|85721831|gb|ABC76774.1| transcription-repair coupling factor [Syntrophus aciditrophicus SB]
          Length = 1202

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 203/376 (53%), Gaps = 13/376 (3%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  AI+DI  DM+    M R++ GD G GKT VA+ +       G Q  ++ P
Sbjct: 661  PYDETPDQARAIEDIHADMNSAKPMDRLICGDAGFGKTEVAMRSAFRTAMDGRQTAVLVP 720

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              ILA+QH +      ++  I +E +     +A +   LE +  GQ  I+IGTH L Q  
Sbjct: 721  TTILAEQHCQTFSSRMKDYPIRIEALNRFKSKAEQSSVLEGLRKGQVDIVIGTHRLLQKD 780

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L LVIVDE+ RFGV  + KL +  T   VL +TATPIPRTL L+ +G  D+S I 
Sbjct: 781  VTFKNLGLVIVDEEQRFGVAHKEKLKKLRTLVDVLTLTATPIPRTLHLSLVGIRDLSIIN 840

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R+ IKT ++  N  + + E ++  L+   + +++  ++  +       +VE+   
Sbjct: 841  TPPEDRQTIKTYVLEFNE-ETIREAIRRELARNGQVFFLHDRV--RSIYTMARLVEKLVP 897

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                  + I ++HG+M   + E VM  F    C +L+ TT+I  G+D+  A+ I++  A+
Sbjct: 898  -----EADIGVVHGQMKPREIEDVMGRFLRKECNVLVCTTIIGSGLDIPTANTILVNRAD 952

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEED 624
             FGLAQL+Q+RGRVGR  E +   LL      LS+++  RL V+ +  +   GF IA  D
Sbjct: 953  RFGLAQLYQIRGRVGRSSEEAYAYLLVPKGVLLSRDAQKRLQVIMDFSEPGSGFRIASSD 1012

Query: 625  LKQRKEGEILGIKQSG 640
            ++ R  G +LG  QSG
Sbjct: 1013 MEIRGGGNLLGTSQSG 1028


>gi|319953407|ref|YP_004164674.1| transcription-repair coupling factor [Cellulophaga algicola DSM
           14237]
 gi|319422067|gb|ADV49176.1| transcription-repair coupling factor [Cellulophaga algicola DSM
           14237]
          Length = 1125

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 135/390 (34%), Positives = 215/390 (55%), Gaps = 15/390 (3%)

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +G +  ++  +  +  T  Q  A +DI +DM  +  M R++ GDVG GKT VA+ A   A
Sbjct: 543 DGYLQHELEASFIYEDTPDQSKATEDIKRDMESERPMDRLICGDVGFGKTEVAIRAAFKA 602

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           V  G Q  ++ P  ILA QH    K+  ++  + V+ +        ++  LER+  G+  
Sbjct: 603 VANGKQVAVLVPTTILAFQHNRTFKERLKDMPVTVDYLNRFRTTKEKKDTLERLEAGKVD 662

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           IIIGTH L   ++++  L L+IVDE+ +FGV  + KL        VL +TATPIPRTL  
Sbjct: 663 IIIGTHQLVNKNVKFKDLGLLIVDEEQKFGVAVKDKLKSIKENVDVLTLTATPIPRTLQF 722

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           + +   D+S I   P  R PI++ +I  +  + + + +   +  G + ++I  ++E  KE
Sbjct: 723 SLMAARDLSVINTAPPNRYPIQSDVIRFSE-ETIRDAVSYEIQRGGQVFFIHNRVENIKE 781

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                +++R         + I I HG+M     E +M +F NG   +L++TT+IE G+DV
Sbjct: 782 --VAGLIQRLVP-----DAKIGIGHGQMEGKKLEILMLAFINGEFDVLVSTTIIESGLDV 834

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN- 613
            +A+ I I NA +FGL+ LHQ+RGRVGR  + + C  +  PP   ++ ++  R+  L+  
Sbjct: 835 SNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFI-TPPYEVMTSDARKRIEALEQF 893

Query: 614 TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641
           TE   GF IA +DL+ R  G+ILG +QSG 
Sbjct: 894 TELGSGFNIAMKDLEIRGAGDILGGEQSGF 923


>gi|331084270|ref|ZP_08333375.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401805|gb|EGG81382.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 1182

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 131/372 (35%), Positives = 206/372 (55%), Gaps = 13/372 (3%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  AI+   QDM  K  M R++ GDVG GKT +A+     A + G Q V + P  IL
Sbjct: 636 TDDQLMAIQAAKQDMESKKIMDRLICGDVGYGKTEIAIRIAFKAAQEGKQVVYLVPTTIL 695

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY    +  ++  + V+++      A ++K +     G   I+IGTH +  D +++ 
Sbjct: 696 AQQHYNTFVQRMKDFPVRVDLLCRFRTPAQQKKTIADTQKGLVDILIGTHRVLSDDVKFK 755

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ +G  D+S + E P 
Sbjct: 756 DLGLLIIDEEQRFGVTHKEKIKKLKENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPM 815

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R PI+T ++  N  + V E +   L+ G + Y++  ++ +  E     V  R   L   
Sbjct: 816 DRMPIQTYVMEYNE-EMVREAISRELARGGQVYYVYNRVNDIDE-----VTNRVAKLVPE 869

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             +++A  HG+M +   E +M SF NG   +L++TT+IE G+D+ +A+ +II +A+  GL
Sbjct: 870 --ANVAFAHGQMQEHQLEKIMYSFINGEIDVLVSTTIIETGLDISNANTMIIHDADQMGL 927

Query: 574 AQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           +QL+QLRGRVGR    +   L+Y  +  L + +  RL  ++   D   GF IA  DL+ R
Sbjct: 928 SQLYQLRGRVGRSNRTAYAFLMYKKNKMLKEVAEKRLHAIREFTDLGSGFKIAMRDLEIR 987

Query: 629 KEGEILGIKQSG 640
             G +LG +Q G
Sbjct: 988 GAGNLLGAEQHG 999


>gi|255014104|ref|ZP_05286230.1| putative transcription-repair coupling factor [Bacteroides sp.
           2_1_7]
          Length = 1120

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 137/407 (33%), Positives = 217/407 (53%), Gaps = 13/407 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+L+  + K+E G     +  +  ++  +  +  T  Q  AI ++  DM     M R++ 
Sbjct: 523 LILLYSKRKQETGFAYTPDSFMQHELEASFIYEDTPDQMKAIAEVKADMESTRPMDRLIC 582

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+   +  ++    ++ I+   
Sbjct: 583 GDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQTFCERLKDFPCKIDYISRAR 642

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G+ +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 643 TAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLIIDEEQKFGVSVKEKLRQLKV 702

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L MTATPIPRTL  + +G  D+S IT  P  R P++T +   N  D + E +   +
Sbjct: 703 NVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEVERFNP-DIIREAINFEM 761

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S   + ++I  +I+   E    ++V R     E   + +A+ HG+M     E ++  F N
Sbjct: 762 SRNGQVFFINNRIQNIYE--METLVRR-----EVPDARVAVGHGQMEPEKLEKIILDFVN 814

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
               +LIAT+++E GIDV +A+ III NA+ FGL+ LHQLRGRVGR    + C LL  P 
Sbjct: 815 YEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPL 874

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             L++ +  RL  ++N  +   G  IA +DL  R  G +LG +QSG 
Sbjct: 875 TSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNMLGAEQSGF 921


>gi|260589951|ref|ZP_05855864.1| transcription-repair coupling factor [Blautia hansenii DSM 20583]
 gi|260539758|gb|EEX20327.1| transcription-repair coupling factor [Blautia hansenii DSM 20583]
          Length = 1182

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 131/372 (35%), Positives = 206/372 (55%), Gaps = 13/372 (3%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  AI+   QDM  K  M R++ GDVG GKT +A+     A + G Q V + P  IL
Sbjct: 636 TDDQLMAIQAAKQDMESKKIMDRLICGDVGYGKTEIAIRIAFKAAQEGKQVVYLVPTTIL 695

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY    +  ++  + V+++      A ++K +     G   I+IGTH +  D +++ 
Sbjct: 696 AQQHYNTFVQRMKDFPVRVDLLCRFRTPAQQKKTIADTQKGLVDILIGTHRVLSDDVKFK 755

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ +G  D+S + E P 
Sbjct: 756 DLGLLIIDEEQRFGVTHKEKIKKLKENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPM 815

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R PI+T ++  N  + V E +   L+ G + Y++  ++ +  E     V  R   L   
Sbjct: 816 DRMPIQTYVMEYNE-EMVREAISRELARGGQVYYVYNRVNDIDE-----VTNRVAKLVPE 869

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             +++A  HG+M +   E +M SF NG   +L++TT+IE G+D+ +A+ +II +A+  GL
Sbjct: 870 --ANVAFAHGQMQEHQLEKIMYSFINGEIDVLVSTTIIETGLDISNANTMIIHDADQMGL 927

Query: 574 AQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           +QL+QLRGRVGR    +   L+Y  +  L + +  RL  ++   D   GF IA  DL+ R
Sbjct: 928 SQLYQLRGRVGRSNRTAYAFLMYKKNKMLKEVAEKRLHAIREFTDLGSGFKIAMRDLEIR 987

Query: 629 KEGEILGIKQSG 640
             G +LG +Q G
Sbjct: 988 GAGNLLGAEQHG 999


>gi|78212830|ref|YP_381609.1| transcription-repair coupling factor [Synechococcus sp. CC9605]
 gi|78197289|gb|ABB35054.1| transcription-repair coupling factor [Synechococcus sp. CC9605]
          Length = 1192

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 139/450 (30%), Positives = 241/450 (53%), Gaps = 24/450 (5%)

Query: 237  QIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
            ++AL L++   + ++  G     +G    ++  + P+ PT  Q  A  D+ +DM ++  M
Sbjct: 584  KVALDLVKLYAERQQAAGFAFPTDGPWQVEMEESFPYDPTPDQLKATADVKRDMERQEPM 643

Query: 295  LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
             R++ GDVG GKT VA+ A+  A+ AG Q  ++AP  +LAQQH+  + +      I V +
Sbjct: 644  DRLVCGDVGFGKTEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVAL 703

Query: 355  ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
            +      + R+  L+ +  G    ++GTH L      + +L L++VDE+ RFGV Q+ K+
Sbjct: 704  LNRFRTASERKSILDGLKQGTIDAVVGTHQLLSKGASFQELGLLVVDEEQRFGVNQKEKI 763

Query: 415  TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                    VL ++ATPIPRTL ++  G  ++S IT  P  R+PIKT +  ++  + +   
Sbjct: 764  KVLRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLASLD-PEAMRSA 822

Query: 475  LKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
            ++  L  G + +++ P++E  E+  +  R ++     L         + HG+M++ + E+
Sbjct: 823  IRQELDRGGQVFYVVPRVEGIEEVAAGLREMLPGLKLL---------VAHGQMAEGELEN 873

Query: 533  VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
             M +F  G   +++ TT++E G+D+   + I+IE+A  FGLAQL+QLRGRVGR   I + 
Sbjct: 874  AMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGR-SGIQAH 932

Query: 593  ILLYHP---PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK--- 643
              L++P    LS  +  RL  ++       G+ +A  D++ R  G +LG++QSG  +   
Sbjct: 933  AWLFYPGNASLSDTARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVQQSGQMETIG 992

Query: 644  FLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            F +    L +SL EI  +D   +     DL
Sbjct: 993  FDLYMEMLQESLAEIQGQDIPSVEDTQVDL 1022


>gi|307265094|ref|ZP_07546654.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919892|gb|EFN50106.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 1169

 Score =  213 bits (543), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 151/462 (32%), Positives = 240/462 (51%), Gaps = 36/462 (7%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFK 248
           DL+QK   P+         NP K       EW    R+     E LA  +  L  ++Q  
Sbjct: 551 DLVQKYVGPT--------DNPPKLNKLGGSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMV 602

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  G   + +    ++     P+  T+ Q   IK+I +DM +   M R+L GDVG GKT 
Sbjct: 603 K--GHAFSPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTE 660

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           VAL A   AV  G Q   + P  ILA QHY  FI+++ +   + +E+++       + + 
Sbjct: 661 VALRAAFKAVADGKQVAFLCPTTILAYQHYTNFIERFKE-FPVKIEMLSRFRTPKEQAQI 719

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           ++ +A G   II+GTH L Q+ +++  L L+I+DE+ RFGV  + K+ +      VL ++
Sbjct: 720 IKGLAEGTIDIIVGTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLS 779

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKA 485
           ATPIPRTL ++ +G  D+S +   P  R P++T ++  N   I + I R    +  G + 
Sbjct: 780 ATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVMEFNEELIKDAILR---EIGRGGQV 836

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y++  ++         + +E+  SL +       +A+ HG+M +   E VM  F NG   
Sbjct: 837 YFVYNRV---------NGIEKMASLVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYD 887

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LS 601
           +L++TT+IE G+D+ + + II+ +A+  GL+QL+QLRGRVGR   ++     Y     LS
Sbjct: 888 VLVSTTIIETGLDIPNVNTIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLS 947

Query: 602 KNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
           + +  RL  +K  TE   GF IA  DL+ R  G +LG +Q G
Sbjct: 948 EVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHG 989


>gi|123966148|ref|YP_001011229.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9515]
 gi|123200514|gb|ABM72122.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9515]
          Length = 1175

 Score =  213 bits (543), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 128/389 (32%), Positives = 218/389 (56%), Gaps = 15/389 (3%)

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +G   +++  + P+ PT  Q +A+K+I  DM     M R++ GDVG GKT VA+ A+  A
Sbjct: 600 DGPWQKELEESFPYQPTPDQLTAVKEIKIDMESDKPMDRLVCGDVGFGKTEVAVRAIFKA 659

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           + +G Q +++AP  ILAQQH+           I V ++      + ++     + + +  
Sbjct: 660 ITSGKQVILLAPTTILAQQHWRTFNNRFSPYPIKVSLLNRFKTSSEKKDIYAGLKNNKID 719

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           +++ TH +    I+   L L+++DE+ RFGV+Q+ K+    T   VL ++ATPIPRTL +
Sbjct: 720 LVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKNIKTNIDVLTLSATPIPRTLYM 779

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +  G   +S +   P  R+ IKT +  I+ +D +   +   L  G + +++ P+I +  +
Sbjct: 780 SLSGLRQMSLLNTPPPSRRSIKTYLSEID-MDVIRTAISQELDRGGQIFYVLPRISDIDQ 838

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +    +   FN L         + HG+M++ID E+ M +F NG   L+I TT+IE G+D+
Sbjct: 839 A-VNKLTNMFNDL------KFIVAHGQMNEIDLENAMIAFNNGEVDLMICTTIIESGLDI 891

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNT 614
              + IIIE++  FGL+QL+QLRGRVGR   I +   L++P L   ++ S  RL  +K+ 
Sbjct: 892 PKVNTIIIEDSHKFGLSQLYQLRGRVGRS-GIQAHAWLFYPNLNNINEASKQRLKAIKDF 950

Query: 615 ED---GFLIAEEDLKQRKEGEILGIKQSG 640
            +   G+ +A +D++ R  G +LG +QSG
Sbjct: 951 SELGSGYQLAMKDMEIRGVGSLLGEEQSG 979


>gi|302345727|ref|YP_003814080.1| transcription-repair coupling factor [Prevotella melaninogenica ATCC
            25845]
 gi|302150109|gb|ADK96371.1| transcription-repair coupling factor [Prevotella melaninogenica ATCC
            25845]
          Length = 1178

 Score =  213 bits (543), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 140/435 (32%), Positives = 234/435 (53%), Gaps = 20/435 (4%)

Query: 248  KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
            ++E G   + +  +  ++  +  +  T  Q  A +++ QDM     M R++ GDVG GKT
Sbjct: 589  RREKGFAFSPDSFMQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKT 648

Query: 308  LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             VA+ A   A     Q  ++ P  +LA QHY+  KK  ++  + V+ ++        ++ 
Sbjct: 649  EVAIRAAFKAAVDNKQVAVLVPTTVLAFQHYQTFKKRLKDMPVRVDYLSRARSAKQTKQV 708

Query: 368  LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            LE +A G+  I++GTH L   S++++ L L+I+DE+ +FGV  + KL Q  T    L M+
Sbjct: 709  LEDLAEGKIDILVGTHKLIGKSVKWHDLGLLIIDEEQKFGVSTKEKLRQLKTNVDTLTMS 768

Query: 428  ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486
            ATPIPRTL  + +G  D+S +   P  R PI+T I   +   EVI + +   +S   + Y
Sbjct: 769  ATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIASFSH--EVIADAINFEMSRNGQVY 826

Query: 487  WICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            ++  +I     SN   +    N + ++  +  IAI HG+M   + E ++  F N    +L
Sbjct: 827  FVNDRI-----SNLPEIA---NLIKKYVPNCRIAIGHGQMKPEELEEIVMGFMNYDYDVL 878

Query: 546  IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKN 603
            ++TT++E GID+ +A+ III +A  FGL+ LHQ+RGRVGR  + + C LL  P   L+  
Sbjct: 879  LSTTIVENGIDISNANTIIINDAHRFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNPE 938

Query: 604  SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFL---IAQPELHDSLLE 657
            +  RL  L+   D   GF +A +DL  R  G +LG +QSG  + L     Q  L+ +++E
Sbjct: 939  ARRRLEALETFSDLGSGFNLAMQDLDIRGAGNLLGSEQSGFMEDLGYETYQKILNQAVME 998

Query: 658  IARKDAKHILTQDPD 672
            +   + + +  ++ D
Sbjct: 999  LKNDEFQDLYEEEMD 1013


>gi|326390842|ref|ZP_08212394.1| transcription-repair coupling factor [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993101|gb|EGD51541.1| transcription-repair coupling factor [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 1169

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 151/462 (32%), Positives = 240/462 (51%), Gaps = 36/462 (7%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFK 248
           DL+QK   P+         NP K       EW    R+     E LA  +  L  ++Q  
Sbjct: 551 DLVQKYVGPT--------DNPPKLNKLGGSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMV 602

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  G   + +    ++     P+  T+ Q   IK+I +DM +   M R+L GDVG GKT 
Sbjct: 603 K--GHAFSPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTE 660

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           VAL A   AV  G Q   + P  ILA QHY  FI+++ +   + +E+++       + + 
Sbjct: 661 VALRAAFKAVADGKQVAFLCPTTILAYQHYTNFIERFKE-FPVKIEMLSRFRTPKEQAQI 719

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           ++ +A G   II+GTH L Q+ +++  L L+I+DE+ RFGV  + K+ +      VL ++
Sbjct: 720 IKGLAEGTIDIIVGTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLS 779

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKA 485
           ATPIPRTL ++ +G  D+S +   P  R P++T ++  N   I + I R    +  G + 
Sbjct: 780 ATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVMEFNEELIKDAILR---EIGRGGQV 836

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y++  ++         + +E+  SL +       +A+ HG+M +   E VM  F NG   
Sbjct: 837 YFVYNRV---------NGIEKMASLVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYD 887

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LS 601
           +L++TT+IE G+D+ + + II+ +A+  GL+QL+QLRGRVGR   ++     Y     LS
Sbjct: 888 VLVSTTIIETGLDIPNVNTIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLS 947

Query: 602 KNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
           + +  RL  +K  TE   GF IA  DL+ R  G +LG +Q G
Sbjct: 948 EVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHG 989


>gi|167766179|ref|ZP_02438232.1| hypothetical protein CLOSS21_00673 [Clostridium sp. SS2/1]
 gi|167712259|gb|EDS22838.1| hypothetical protein CLOSS21_00673 [Clostridium sp. SS2/1]
          Length = 1173

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 127/376 (33%), Positives = 205/376 (54%), Gaps = 13/376 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q +AI D  +DM  K  M R++ GDVG GKT VA+ A   AV+ G Q   + P
Sbjct: 625 PYDETQDQLNAIDDTKRDMESKKIMDRLICGDVGYGKTEVAIRAAFKAVDNGKQVAYLVP 684

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHY    +   +  I V +++       +++ +E + +G   ++IGTH L    
Sbjct: 685 TTILAQQHYNTFAQRFHDYPITVRMMSRFCTAKEQKETIEGLKNGTVDVVIGTHRLLSKD 744

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +QY  L L+++DE+ RFGV  + K+        VL ++ATPIPRTL ++ +G  D+S + 
Sbjct: 745 MQYKNLGLLVIDEEQRFGVTHKEKIKTMKKDVDVLSLSATPIPRTLHMSLIGIRDMSVLE 804

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           E P  R+ I+T ++  N  + V E +   ++ G + Y++  ++     +N   V      
Sbjct: 805 EPPHDRRAIQTYVMEYNE-ELVKEAVYREMTRGGQVYYVYNRV-----NNIAEVTAELQR 858

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L     + +A  HG+M + + E +M  F N    +L++TT+IE G+D+ + + +II +A 
Sbjct: 859 LLP--DAKVAFAHGQMKERELEEIMMGFMNHEIDVLVSTTIIETGLDIPNVNTMIIHDAN 916

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEED 624
             GL+QL+QLRGRVGR    +   L+Y  +  L + +  RL  ++   D   G+ IA  D
Sbjct: 917 QLGLSQLYQLRGRVGRSNRNAFAFLMYKKNTLLKETAEKRLQAIREFTDLGSGYKIAMRD 976

Query: 625 LKQRKEGEILGIKQSG 640
           L+ R  G +LG  QSG
Sbjct: 977 LEIRGAGNLLGQAQSG 992


>gi|126726506|ref|ZP_01742347.1| transcription-repair coupling factor [Rhodobacterales bacterium
           HTCC2150]
 gi|126704369|gb|EBA03461.1| transcription-repair coupling factor [Rhodobacterales bacterium
           HTCC2150]
          Length = 1157

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 143/399 (35%), Positives = 225/399 (56%), Gaps = 23/399 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q  AI+ + +D+ +   M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 597 PFQETEDQLGAIEAVAEDLGRGLPMDRLVCGDVGFGKTEVAMRAAFVAAMSGVQVAVIAP 656

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+   +  +   I V  ++  +       A E I  G A II+GTHA+   S
Sbjct: 657 TTLLARQHYKSFAERFRGFPIEVRQLSRFVSTKDAHDAREAINRGTADIIVGTHAVLAKS 716

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+I+DE+ +FGVQ + +L Q  +  HVL +TATPIPRTL L+  G  ++S I 
Sbjct: 717 VRFNNLGLLIIDEEQKFGVQHKERLKQMRSDIHVLTLTATPIPRTLQLSLSGVRELSIIG 776

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    +   D V  R + +L E   G +++++ P+I +  E      +E 
Sbjct: 777 TPPVDRLAIRTY---VTEFDSVTLR-EALLREHYRGGQSFYVVPRISDLPE------IEE 826

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L +H    S    HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +II
Sbjct: 827 F--LRDHVPEVSFITAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMII 884

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
             A+ FGLAQL+Q+RGRVGR +  +   L   P   L+ ++  RL VL + +    GF +
Sbjct: 885 HRADMFGLAQLYQIRGRVGRSKTRAYAYLTTRPRKKLTPSAEKRLRVLGSLDSLGAGFTL 944

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           A +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 945 ASQDLDIRGAGNLLGEEQSGQMRDV--GFELYQSMLEEA 981


>gi|84687524|ref|ZP_01015400.1| transcription-repair coupling factor [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664433|gb|EAQ10921.1| transcription-repair coupling factor [Rhodobacterales bacterium
           HTCC2654]
          Length = 1153

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 131/380 (34%), Positives = 216/380 (56%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q SAI D+++DMS  + M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 596 PYTETDDQLSAIADVIEDMSAGSPMDRLICGDVGFGKTEVAMRAAFVAALSGKQVAVIAP 655

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+   +  +   I V  ++  + Q    +  E +  G   I++GTHAL    
Sbjct: 656 TTLLARQHYKSFAERFRGFPIQVSQLSRFVSQGEANRTREGMKDGTVDIVVGTHALLAKG 715

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            ++  L L+++DE+ RFGV  + +L +  +  HVL ++ATPIPRTL ++  G  D+S I 
Sbjct: 716 TRFKDLGLLVIDEEQRFGVSHKERLKELRSDVHVLTLSATPIPRTLQMSLTGVRDLSIIG 775

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++ + P++++ +E      +E 
Sbjct: 776 TPPVDRLSIRTY---VSEFDTVTIR-EALLREHYRGGQSFVVVPRVKDLRE------IEE 825

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L       S    +G+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++
Sbjct: 826 F--LETQVPEVSFVTANGQMAAGELDHRMNAFYDGKFDVLVATTIVESGLDIPTANTMVV 883

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
             A+ FGLAQL+Q+RGRVGR +  + C L   P  PL+  +  RL VL + +    GF +
Sbjct: 884 WRADMFGLAQLYQIRGRVGRSKTRAYCYLTTKPRVPLTPGAEKRLKVLGSLDSLGAGFAL 943

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A +DL  R  G +LG +QSG
Sbjct: 944 ASQDLDIRGAGNLLGEEQSG 963


>gi|254497711|ref|ZP_05110485.1| transcription repair coupling factor [Legionella drancourtii
           LLAP12]
 gi|254353058|gb|EET11819.1| transcription repair coupling factor [Legionella drancourtii
           LLAP12]
          Length = 1149

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 140/387 (36%), Positives = 207/387 (53%), Gaps = 23/387 (5%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           K     PF+ T  Q  +I  I+ DM     M R++ GDVG GKT VA+ A   AV+   Q
Sbjct: 595 KFASAFPFTETVDQLQSINQIITDMQSSRPMDRLICGDVGFGKTEVAMRAAFVAVQNNKQ 654

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             I+ P  +LA QH+E  +    +  + +E+++           L  +  G+  I+IGTH
Sbjct: 655 VCILVPTTLLAGQHFESFRDRFADFAVNIELLSRFRSAKETEGVLASLKSGKTDIVIGTH 714

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            LFQ +I +  L L+I+DE+HRFGV+Q+  +    T   +L MTATPIPRTL +   G  
Sbjct: 715 KLFQSNIAFKNLGLLIIDEEHRFGVKQKEHIKALRTHVDILSMTATPIPRTLNMAMAGIR 774

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKES 498
           DIS +T  PA R  IKT      + D V+   + +L E   G + +++   +E  E+   
Sbjct: 775 DISLMTTPPAKRLAIKTFW--QEKKDSVVR--EAILREILRGGQVFFLHNNVETIERICQ 830

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           + +++V           + +   HG+M + + E VM  F +    +L+ TT+IE GID+ 
Sbjct: 831 DLQTLVPE---------AKVRSAHGQMRERELERVMSEFYHHRFNVLVCTTIIETGIDIP 881

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED 616
            A+ III+ A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RL  + + ED
Sbjct: 882 TANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPDEKLLTSDAVKRLEAIVSLED 941

Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSG 640
              GF +A  DL+ R  GE+LG  QSG
Sbjct: 942 LGAGFTLATHDLEIRGAGELLGEDQSG 968


>gi|189218310|ref|YP_001938952.1| transcription-repair coupling factor mfd (superfamily II helicase)
           [Methylacidiphilum infernorum V4]
 gi|189185168|gb|ACD82353.1| Transcription-repair coupling factor mfd (superfamily II helicase)
           [Methylacidiphilum infernorum V4]
          Length = 1060

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 135/377 (35%), Positives = 207/377 (54%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  AI++  +DM  K  M R++ GDVG GKT VA+ A+  AV  G QAV++ P 
Sbjct: 530 YEETPDQLKAIEETKKDMESKRPMDRLICGDVGFGKTEVAIRAIFKAVMGGKQAVLLTPT 589

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH+  +++   +  I   ++   +  +  ++ L  +  G   +++GTH L    +
Sbjct: 590 TVLAKQHFNTLRERFADYPIHTALLCRFVKNSEEKEILAGLKEGTVDVVVGTHRLLSADV 649

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+++DE+ RFGV Q+ K  +K     VLL++ATPIPRTL L   G  D+S I  
Sbjct: 650 EFKDLGLIVIDEEQRFGVLQKEKWKEKFRFIDVLLLSATPIPRTLYLAMAGARDMSLIET 709

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R PI+T++ P +   I + IER    L+ G + Y++  +I          V  R  
Sbjct: 710 PPPNRFPIETIVGPYDERVIRQAIER---ELNRGGQVYFLHNRIR-----TIEKVASRLK 761

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           SL    +  I I HGRM   + E VM+ F  G   +L+AT++IE G+D+ +A+ III+ A
Sbjct: 762 SLLP--SIKIDIGHGRMKKHELEEVMERFVEGKIDVLLATSIIENGLDIPNANTIIIDRA 819

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPL--SKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLA L+QLRGRVGR  + +   LL    L    ++  R+  ++       GF IA  
Sbjct: 820 DLFGLADLYQLRGRVGRSNQKAYAYLLLPRDLFIQSDAKKRIKAMQEHSQLGTGFQIALR 879

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G +LG  QSG
Sbjct: 880 DLEIRGAGNLLGTSQSG 896


>gi|304437107|ref|ZP_07397070.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304370058|gb|EFM23720.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 1097

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 208/384 (54%), Gaps = 28/384 (7%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI +I  DM  +  M R+L GDVG GKT VA+ A   A   G Q  ++ P
Sbjct: 549 PYQETDDQLRAIAEIKHDMESEKPMDRLLCGDVGFGKTEVAIRAAYKAAMDGYQVAVLVP 608

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF-QD 388
             +LAQQHY+       +    V+++        +   L  +A GQ  I+IGTHA+  + 
Sbjct: 609 TTVLAQQHYQTFAARFADFAPKVDVVCRFRTLREQAATLRDVARGQVDILIGTHAILNRK 668

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +++ KL L+IVDE+ RFGV Q+ K+ + AT   VL ++ATPIPRTL ++  G  D+S I
Sbjct: 669 RVRFQKLGLLIVDEEQRFGVTQKEKIKEFATGVDVLTLSATPIPRTLHMSLAGARDMSVI 728

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
              PA R P+++ ++  +   +   IER    LS G + Y+I  +            VE 
Sbjct: 729 ETPPAERLPVQSYVVESSDAMMRGAIER---ELSRGGQIYFIYNR------------VES 773

Query: 507 FNSLHEHF-----TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            + + EH       + IA  HG+MS+   E VM  F  G   +L+AT++IE GIDV +A+
Sbjct: 774 IDRMREHLLQIVPQARIASAHGQMSEDILEQVMMDFYEGHYDILLATSIIENGIDVANAN 833

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---D 616
            III +A+ FGL+QL+Q+RGRVGR  +++     Y     LS+ +  RL  +K       
Sbjct: 834 TIIIYDADRFGLSQLYQMRGRVGRSAKMAFAYFTYRRDKVLSETAEKRLQAMKEFARLGS 893

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF IA  DL+ R  G +LG +Q G
Sbjct: 894 GFKIAMRDLEIRGAGSLLGAQQHG 917


>gi|229824545|ref|ZP_04450614.1| hypothetical protein GCWU000282_01889 [Catonella morbi ATCC 51271]
 gi|229785916|gb|EEP22030.1| hypothetical protein GCWU000282_01889 [Catonella morbi ATCC 51271]
          Length = 1183

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 138/431 (32%), Positives = 233/431 (54%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  A  E +A ++  L  +++  +E+G     +     +      +  T+ Q 
Sbjct: 571 EWAKTKRKVAAKIEDIADELIALYAKRE--REVGYAFGPDTPEQSEFESAFAYVETEDQL 628

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I  DM +   M R+L GDVG GKT VA+ A+  AV  G Q   + P  ILAQQHY
Sbjct: 629 RSAIEIKADMEKSKPMDRLLVGDVGYGKTEVAMRAIFKAVMDGKQVAFLVPTTILAQQHY 688

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +   +    + +++  + +  + + ++ +  G  +I++GTH L    +Q+  L L+
Sbjct: 689 NSLVQRFADYPFEIRLMSRFVSKKQQDQTIDDLLTGAVNIVVGTHRLVSKDVQFQDLGLL 748

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ +G  D+S I   P  R P+
Sbjct: 749 IVDEEQRFGVKHKERLKQLKSQVDVLTLTATPIPRTLHMSMIGVRDLSLIETPPNNRFPV 808

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           +T ++  N   I   IER    L+   + +++  ++   E++    +++V          
Sbjct: 809 QTYVMERNDGAIKSGIER---ELAREGQVFYLYNRVATIERRAMEIQALVPE-------- 857

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + +A  HG+MS+++ E+V+  F  G   +L+ TT+IE G+D+ + + + +E+A+H GL+
Sbjct: 858 -ARVAYAHGQMSEVELETVLVDFIQGAYDVLVTTTIIETGVDIPNVNTLFVEDADHMGLS 916

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
            L+QLRGRVGR   ++   L+Y P   LS+ S  RL  ++  TE   GF IA  DL  R 
Sbjct: 917 TLYQLRGRVGRTNRVAYAYLMYEPFKSLSEVSEKRLQAVREFTELGSGFKIAMRDLSIRG 976

Query: 630 EGEILGIKQSG 640
            G +LG +QSG
Sbjct: 977 AGNLLGKQQSG 987


>gi|114764341|ref|ZP_01443569.1| transcription-repair coupling factor [Pelagibaca bermudensis
           HTCC2601]
 gi|114543289|gb|EAU46306.1| transcription-repair coupling factor [Roseovarius sp. HTCC2601]
          Length = 1158

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 140/399 (35%), Positives = 224/399 (56%), Gaps = 23/399 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q  AI+D+L+DM+  N M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 601 PYTETDDQIGAIEDVLEDMTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVIAP 660

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+   +  +   I V  ++  +      K  + I  G   I +GTHAL   +
Sbjct: 661 TTLLARQHYKSFAERFRGFPINVAPLSRFVSSGQAAKTRDGITKGTVDIAVGTHALLAKN 720

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 721 IRFQNLGLLIIDEEQHFGVGHKERLKQLRSDIHVLTLTATPIPRTLQLSLSGVRDLSIIG 780

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  E      +E 
Sbjct: 781 TPPVDRLSIRTY---VSEFDAVTIR-EALLREHYRGGQSFYVVPRISDLAE------IEE 830

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L E     S  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++
Sbjct: 831 F--LREQVPEVSYVVAHGQMAAGELDERMNAFYDGKFDVLLATTIVESGLDIPTANTMVV 888

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
             ++ FGL+QL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +
Sbjct: 889 HRSDMFGLSQLYQIRGRVGRSKTRAYAYLTTQPRAKLTDTAQKRLRVLGSLDTLGAGFTL 948

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           A +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 949 ASQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 985


>gi|330836643|ref|YP_004411284.1| transcription-repair coupling factor [Spirochaeta coccoides DSM
           17374]
 gi|329748546|gb|AEC01902.1| transcription-repair coupling factor [Spirochaeta coccoides DSM
           17374]
          Length = 1092

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 137/415 (33%), Positives = 236/415 (56%), Gaps = 17/415 (4%)

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           E LA ++  L  R++  +    P + + ++  +   + P+  T+ Q + I+DI +DM   
Sbjct: 514 EQLATRLQQLYARRKNARGFPFPPDTDWQL--QFEASFPYDETEDQLTCIEDIKKDMESP 571

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT +A  A   AV +G Q V +AP  ILA+QHY        +  + 
Sbjct: 572 IVMDRLVCGDVGYGKTEIAFRAAFKAVMSGKQVVFLAPTTILAEQHYNTFIGRLGDFPVR 631

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V +++  +P+  + K L+ +  GQ  I+ GTH + Q  +++  L L++VDE+ RFGV+ +
Sbjct: 632 VGLLSRMVPRKEQSKVLKNLQAGQLDILFGTHRVIQKDVKFSDLGLLVVDEEQRFGVKDK 691

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            ++ +  T+   L ++ATPIPRTL ++ L   D+S +T  P  R+PI+T+I   +  D  
Sbjct: 692 ERIKEMRTSVDSLSLSATPIPRTLYMSLLRIRDMSLLTTPPIARRPIRTIIQQYDP-DIA 750

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
            + ++  L  G + +++  +IE         VV +       F  +I   HG+M+  D E
Sbjct: 751 EKAIRNELGRGGQVFYLHNRIE-----TLGMVVNKLRERMPEF--AIESAHGQMNGDDLE 803

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             M  F +   ++L++TT+IE GID+ + + III+ A+ +G++QL+QLRGRVGR +   +
Sbjct: 804 DTMRRFIHEGIQVLVSTTIIENGIDIPNVNTIIIDRADMYGVSQLYQLRGRVGRSDR-EA 862

Query: 592 CILLYHPP---LSKNSYTRL-SVLKNTE--DGFLIAEEDLKQRKEGEILGIKQSG 640
           C  L++P    LS+ +  RL ++ ++TE   GF +A +D++ R  G +LG +QSG
Sbjct: 863 CAYLFYPQEEMLSEIAIRRLQTISQHTELGGGFKVAMKDMEIRGTGNLLGREQSG 917


>gi|332297986|ref|YP_004439908.1| transcription-repair coupling factor [Treponema brennaborense DSM
            12168]
 gi|332181089|gb|AEE16777.1| transcription-repair coupling factor [Treponema brennaborense DSM
            12168]
          Length = 1185

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/414 (33%), Positives = 229/414 (55%), Gaps = 15/414 (3%)

Query: 232  ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            E +A ++  L  R++  +    P + E + A +     P+  T  Q +   ++  DM + 
Sbjct: 606  EDIAQKLIDLYSRRKAARGFPFPKDTEWQTAFEAA--FPYDETDDQLTVTAEVKADMEKP 663

Query: 292  NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
              M R++ GDVG GKT VA+ A   AV  G Q   +AP  ILA+QHYE   +  +N  + 
Sbjct: 664  VPMDRLICGDVGYGKTEVAMRAAFKAVMGGKQVAFLAPTTILAEQHYETCTERFENFPVR 723

Query: 352  VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
            +  ++  + +A ++  LE++  G   I++GTH + Q  + + +L L+I+DE+ RFGV+ +
Sbjct: 724  IAHMSRFVSKAEQKNILEKLKTGGVDILVGTHRIIQKDVIFKELGLMIIDEEQRFGVKDK 783

Query: 412  LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             +L +  T    L M+ATPIPRTL ++ L   D+S +T  P  R+PI+TVI   N  D V
Sbjct: 784  ERLKELKTNIDSLAMSATPIPRTLHMSLLKIRDMSLLTTPPQNRQPIETVIDSYND-DRV 842

Query: 472  IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
               ++     G + +++  ++E  +E+       +   L        A  HG+MS  + +
Sbjct: 843  ATAIRREAERGGQVFYLHNRVETLEETRI-----KLEQLVPEMLVDTA--HGQMSAGELD 895

Query: 532  SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             +   FK G   +L+ATT+IE GID+ + + III+ A+ +G++QL+QLRGRVGR +  + 
Sbjct: 896  DIFRRFKMGGFHVLVATTIIENGIDIPNVNTIIIDRADMYGVSQLYQLRGRVGRSDRKAY 955

Query: 592  CILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
              LLY  +  LS+ +  RL V+ + TE   GF IA +D++ R  G +LG  QSG
Sbjct: 956  AYLLYPENKALSEIAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLLGKDQSG 1009


>gi|15604448|ref|NP_220966.1| transcription-repair coupling factor [Rickettsia prowazekii str.
           Madrid E]
 gi|6226643|sp|O05955|MFD_RICPR RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|3861142|emb|CAA15042.1| TRANSCRIPTION-REPAIR COUPLING FACTOR (mfd) [Rickettsia prowazekii]
 gi|292572220|gb|ADE30135.1| Transcription-repair coupling factor [Rickettsia prowazekii Rp22]
          Length = 1120

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 147/441 (33%), Positives = 240/441 (54%), Gaps = 39/441 (8%)

Query: 237 QIALLLMRKQFKKEIGI--PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           +I+L L++   K+++ I  PI ++ +   K   N PFS T+ Q +AI DI +D++    M
Sbjct: 539 EISLHLIQIAAKRKLNISTPIELDLEAYDKFCANFPFSETEDQLTAINDIREDLTNGMLM 598

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346
            R++ GDVG GKT VA+ A+    ++      Q  ++ P  IL  QH+    E  K +  
Sbjct: 599 DRLICGDVGFGKTEVAMRAVFMVAKSLNEYLPQVAVVVPTTILCSQHFSRFIERFKGFGL 658

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           N + +  +I+       R +    +A G+ +IIIGTHAL   + +++ L L+I+DE+  F
Sbjct: 659 NIKQLSSVISSKEANIIRLE----LASGKINIIIGTHALLHKNTKFFNLKLLIIDEEQHF 714

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  ++T ++P  
Sbjct: 715 GVSQKEFLKSLKSSTHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMP-- 772

Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAII 521
             D VI R   +L E   G +++++ P+I+  E  E   + +V            S  I 
Sbjct: 773 -FDPVIIR-DALLREHFRGGRSFYVAPRIKDMEDIEKQLKQIVPEL---------SYKIA 821

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M+    + VM  F  G   +LI+TT+IE GID+ +A+ +II  A+  GL+QL+QLRG
Sbjct: 822 HGKMTPSKIDEVMSEFYVGKFDILISTTIIESGIDIAEANTMIIHKADTLGLSQLYQLRG 881

Query: 582 RVGRGE--EISSCILLYHPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636
           R+GRG+    +   +  +  ++ +S  RL +++N+     GF IA  D   R  G ++G 
Sbjct: 882 RIGRGKIRGYAYLTVASNKKITSHSLRRLEIIQNSCSLGSGFTIASHDADLRGFGNLIGE 941

Query: 637 KQSGMPKFLIAQPELHDSLLE 657
           +QSG  K +    EL+  +LE
Sbjct: 942 EQSGQIKEV--GTELYQEMLE 960


>gi|123968563|ref|YP_001009421.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. AS9601]
 gi|123198673|gb|ABM70314.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           str. AS9601]
          Length = 1170

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/390 (32%), Positives = 220/390 (56%), Gaps = 17/390 (4%)

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +G    ++  + P+ PT  Q +A+++I  DM  +  M R++ GDVG GKT VA+ A+  A
Sbjct: 599 DGPWQDELEESFPYQPTPDQITAVEEIKSDMESEKPMDRLVCGDVGFGKTEVAVRAIFKA 658

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           + +G Q +++AP  ILAQQH+  I        I V ++        R++    + + +  
Sbjct: 659 ITSGKQVILLAPTTILAQQHWRTISNRFSPYPIKVSLLNRFKTVNERKEIYAGLKNNKID 718

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           +++ TH +    I+   L L+++DE+ RFGV+Q+ K+ +  T+  VL ++ATPIPRTL +
Sbjct: 719 LVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTSIDVLTLSATPIPRTLYM 778

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +  G   +S +   P  R+ IKT +  I+ +D +   +   L  G + +++ P+I +   
Sbjct: 779 SLSGLRQMSLLNTPPPSRRSIKTYLAEID-MDVIRTAINQELDRGGQIFYVLPRISD--- 834

Query: 498 SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                + +  N L   F S    + HG+M++ + E+ M +F NG   L+I TT+IE G+D
Sbjct: 835 -----INQALNKLKNIFPSLKFIVAHGQMNETELENAMIAFNNGEVDLMICTTIIESGLD 889

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVLKN 613
           +   + IIIE++  FGL+QL+QLRGRVGR   + +   L++P ++K    +  RL  +K+
Sbjct: 890 IPKVNTIIIEDSHKFGLSQLYQLRGRVGRS-SVQAHAWLFYPDINKINDAAKQRLKAIKD 948

Query: 614 TED---GFLIAEEDLKQRKEGEILGIKQSG 640
             +   G+ +A +D++ R  G +LG +QSG
Sbjct: 949 FSELGSGYQLAMKDMEIRGVGSLLGEEQSG 978


>gi|302390888|ref|YP_003826708.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM
           5501]
 gi|302202965|gb|ADL11643.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM
           5501]
          Length = 1175

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 137/384 (35%), Positives = 210/384 (54%), Gaps = 15/384 (3%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T  Q   I+++ +DM     M R+L GDVG GKT VA+ A   AV  G 
Sbjct: 620 QEFESDFPYEETPDQLKTIEEVKEDMESPQPMDRLLCGDVGYGKTEVAIRAAFKAVLDGK 679

Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q  ++ P  ILAQQH   FI ++ ++  + V +++       ++K +E +  G   IIIG
Sbjct: 680 QVAMLVPTTILAQQHLNTFIDRF-EDYPVKVGMLSRFKTAKEQKKIIEDLKQGIIDIIIG 738

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH +    I++  L  +IVDE+ RFGV+ + +L Q   +  VL +TATPIPRTL ++ +G
Sbjct: 739 THRILSTDIEFNDLGFLIVDEEQRFGVKHKERLKQIKKSIDVLTLTATPIPRTLHMSLVG 798

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D+S I   P  R PI+T +   +  D + E ++  +  G + Y++  +++     N  
Sbjct: 799 VRDMSLIETPPQNRYPIRTYVREYSD-DLIREAIRKEIDRGGQVYFVHNRVK-----NID 852

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            V  +   L     + +   HG+MS+   E +M  F +G   +L+ TT+IE G+D+ + +
Sbjct: 853 KVAAKIKKLLPK--AEVVTAHGQMSEAKLEKIMLGFLDGEHDVLVCTTIIETGLDIPNVN 910

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTED 616
            I+I NA+  GLAQL+QLRGRVGR   ++   LLY     LS+ +  RL  +K   N   
Sbjct: 911 TILINNADQLGLAQLYQLRGRVGRTNRVAYAYLLYQQDQVLSEVAEKRLQAIKEFTNLGS 970

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF IA  DL+ R  G ILG KQ G
Sbjct: 971 GFKIAMRDLEIRGAGNILGPKQHG 994


>gi|224534488|ref|ZP_03675064.1| transcription-repair coupling factor [Borrelia spielmanii A14S]
 gi|224514165|gb|EEF84483.1| transcription-repair coupling factor [Borrelia spielmanii A14S]
          Length = 1129

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 211/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q V+++P
Sbjct: 580 PYDETPDQITAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVVVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +     ++ L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKTNSEKRILKELKSGEIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FSCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE      ++++E+ 
Sbjct: 760 IPPKNRIKIEAYLESFSELLIKHAIEN---ELSRDGQVFLVNHNIEEL--YYLKTLIEKL 814

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IAIIHG+++ I+ E++M  F     ++L+ATT+IE GID+ +A+ III N
Sbjct: 815 TPY-----ARIAIIHGKLTGIEIENIMHDFIKKAYQILLATTIIENGIDIPNANTIIINN 869

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    D   GF IA 
Sbjct: 870 ANKFGLAQLYQLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSDLGAGFKIAM 929

Query: 623 EDLKQRKEGEILGIKQSG 640
           +D++ R  G +LG +Q G
Sbjct: 930 KDMEIRGVGNLLGREQHG 947


>gi|269837730|ref|YP_003319958.1| transcription-repair coupling factor [Sphaerobacter thermophilus
           DSM 20745]
 gi|269786993|gb|ACZ39136.1| transcription-repair coupling factor [Sphaerobacter thermophilus
           DSM 20745]
          Length = 1173

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 137/395 (34%), Positives = 212/395 (53%), Gaps = 15/395 (3%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G+    +    +++  + P+  T  Q  AI+++  DM +   M R++ GDVG GKT VAL
Sbjct: 608 GVAFGPDTDWDRELEESFPYVETPGQLQAIREVKADMEKPRPMDRLVCGDVGYGKTEVAL 667

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV  G Q  I+ P  ILA QHY   +       + +E+++    +  + + L+++
Sbjct: 668 RAAFKAVNNGYQVAILVPTTILALQHYHTFRSRLAPFPVRIEMLSRLRSRKEQTQILQQL 727

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G+  +IIGTH L Q  +++ KL LVI+DE+ RFGV  +    +  T   VL MTATPI
Sbjct: 728 ERGEIDVIIGTHRLLQRDVRFKKLGLVIIDEEQRFGVAHKEHFKRLRTNVDVLTMTATPI 787

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICP 490
           PRTL +   G  D+S IT  P  R PI+T +   N  D +I E +   +S G + Y++  
Sbjct: 788 PRTLYMALSGIRDLSVITTPPQERTPIRTFVTASN--DSLIREAILREISRGGQVYFVHN 845

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +++     +   V+ER   L     +   + HG+M + + E +M +F      +L+ TT+
Sbjct: 846 RVQ-----SIYHVLERLEKLVPE--ARFGVGHGQMDEDELEQLMLAFMQHEFDVLVCTTI 898

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRL 608
           IE G+D+ + + III+ A   GL QL+QLRGRVGR    +   +LY    PLS  +  RL
Sbjct: 899 IESGVDIPNVNTIIIDRAHQLGLTQLYQLRGRVGRSHHRAYAYVLYDANVPLSAEAVARL 958

Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             ++   +   GF IA  DL+ R  G +LG +QSG
Sbjct: 959 EAIQEATELGAGFQIALRDLEIRGAGNVLGPEQSG 993


>gi|329897463|ref|ZP_08272106.1| Transcription-repair coupling factor [gamma proteobacterium
           IMCC3088]
 gi|328921160|gb|EGG28563.1| Transcription-repair coupling factor [gamma proteobacterium
           IMCC3088]
          Length = 1150

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 139/406 (34%), Positives = 213/406 (52%), Gaps = 27/406 (6%)

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           RK F  E+  P++ E     +     PF  T  Q  AI+ +  DM  +  M R++ GDVG
Sbjct: 579 RKGFAHELD-PLDYE-----RFCSGFPFEETPDQALAIEAVRNDMCAQKVMDRLVCGDVG 632

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
            GKT VA+ A   A     Q  ++ P  +LAQQHY           + V +++     + 
Sbjct: 633 FGKTEVAMRAAFIASHNSKQVAVLVPTTLLAQQHYHSFCDRFAGWDVKVAVVSRFNSASQ 692

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
            +  +  +A G+  I++GTH L    +++  L L+I+DE+HRFGV+Q+  L    T   +
Sbjct: 693 NKAIMADLASGKIDILVGTHKLLSPDVKFADLGLLIIDEEHRFGVKQKETLKALRTEVDI 752

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSE 481
           L +TATPIPRTL +   G  D+S I   PA R  IKT +   N   I E I R  +    
Sbjct: 753 LTLTATPIPRTLNMALGGMRDLSVIATPPAKRLSIKTFVREHNTSMIKEAILRETL---R 809

Query: 482 GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           G + Y++  +++  E+     +++V             +A+ HG+  + + E +M  F +
Sbjct: 810 GGQVYYLHNEVKTIEETARKLQAMVPDLK---------VAVAHGQQHETELERIMSDFYH 860

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
               +L+ TT+IE GIDV +A+ II++ A+  GLAQLHQLRGRVGR    +   LL  P 
Sbjct: 861 QRFHILVCTTIIETGIDVPNANTIIMDRADRLGLAQLHQLRGRVGRSHHQAYAYLLCPPR 920

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             L+K++  RL  ++   D   G+L+A +DL+ R  GE+LG  QSG
Sbjct: 921 SGLTKDAEKRLEAIEAAGDLGAGYLLATQDLEIRGAGELLGDDQSG 966


>gi|294674288|ref|YP_003574904.1| transcription-repair coupling factor [Prevotella ruminicola 23]
 gi|294471847|gb|ADE81236.1| transcription-repair coupling factor [Prevotella ruminicola 23]
          Length = 1122

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 137/401 (34%), Positives = 215/401 (53%), Gaps = 17/401 (4%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +KE G   + +  +  ++  +  +  T  Q  A +D+  DM +   M R++ GDVG GKT
Sbjct: 518 RKEKGFAFSRDSYLQHELEASFLYEDTPDQLKATQDVKADMEKARPMDRLVCGDVGFGKT 577

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A   G Q  ++ P  +LA QH+       ++  + V+ +T         + 
Sbjct: 578 EVAVRAAFKAAVDGKQVAVLVPTTVLAYQHFRTFSNRLKDMPVTVDYLTRARTTKDTNRI 637

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            + +A G+  IIIGTH L   S+++  L L+I+DE+ +FGV  + KL Q  T+   L M+
Sbjct: 638 QKDLAEGKIDIIIGTHRLISKSVKFKDLGLLIIDEEQKFGVSTKEKLRQMKTSVDTLTMS 697

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486
           ATPIPRTL  + +G  D+S I   P  R PI+T I   +   E+I E +   +S   + Y
Sbjct: 698 ATPIPRTLQFSLVGARDLSVIQTPPPNRYPIQTEIHTFS--PEIIAEAVNYEMSRNGQVY 755

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           ++  +I + +  +   +++++        + I I HG+M   + E ++  F N    +L+
Sbjct: 756 FVNNRISDLQ--HIAEIIQKYVP-----DARICIGHGQMKPEELEKIILDFSNYDYDILL 808

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---N 603
           +TT++E GID+ +A+ III  A +FGL+ LHQ+RGRVGRG   + C LL  PPLS     
Sbjct: 809 STTIVENGIDIPNANTIIINGAHNFGLSDLHQMRGRVGRGNRKAFCYLL-APPLSALNPE 867

Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           S  RL  L+N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 868 SRRRLEALENFSDLGSGINIAMQDLDIRGAGNLLGSEQSGF 908


>gi|72382209|ref|YP_291564.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
            NATL2A]
 gi|72002059|gb|AAZ57861.1| transcription-repair coupling factor [Prochlorococcus marinus str.
            NATL2A]
          Length = 1167

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 137/435 (31%), Positives = 235/435 (54%), Gaps = 20/435 (4%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I L+ +  +  KE G     +G    ++  + P++ T  Q +A   +  DM  +  M R+
Sbjct: 586  IDLIKLYAERSKEKGYKFPCDGPWQNELEDSFPYALTPDQATATSQVKSDMESEKPMDRL 645

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GDVG GKT VA+ A+  A+ +G Q  ++AP  +L+QQH+  I        I V ++  
Sbjct: 646  VCGDVGFGKTEVAIRAIFKAITSGKQIALLAPTTVLSQQHWRTISDRFAPYPIKVSLLNR 705

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                + ++  +  +  GQ   ++GTH L    + Y  L L+++DE+ RFGV Q+ K+ + 
Sbjct: 706  FKTNSEKKHIVSGLKDGQIDAVVGTHQLLNKKLVYKDLGLLVIDEEQRFGVNQKEKIKEL 765

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LK 476
              +  VL ++ATPIPRTL ++  G  ++S IT  P  R+PIKT + P++  +E+I   + 
Sbjct: 766  KKSVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLAPLD--NEIIRSAIS 823

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              +  G + ++I P+I+         V E+   +  +    + I HG+M +   E+ M +
Sbjct: 824  QEIDRGGQIFYIVPRIK-----GIEDVAEKLKIMIPNV--KLLIAHGQMEEGALENAMLA 876

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F  G   +L+ TT++E G+D+   + I+IE++  FGL+QL+QLRGRVGR   + +   L+
Sbjct: 877  FNAGEADILLCTTIVESGLDIPRVNTILIEDSHKFGLSQLYQLRGRVGRS-GVQAHAWLF 935

Query: 597  HPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIA 647
            +P    L++ S  RL  +K   D   G+ +A  D++ R  G ILGI+QSG  +   F + 
Sbjct: 936  YPSDEKLNETSRQRLKAIKEFSDLGSGYQLAMRDMEIRGVGNILGIEQSGQMETIGFDLY 995

Query: 648  QPELHDSLLEIARKD 662
               L +++ EI  +D
Sbjct: 996  MELLQETIAEIQGQD 1010


>gi|295136419|ref|YP_003587095.1| transcription-repair coupling factor [Zunongwangia profunda SM-A87]
 gi|294984434|gb|ADF54899.1| transcription-repair coupling factor [Zunongwangia profunda SM-A87]
          Length = 1126

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 138/429 (32%), Positives = 230/429 (53%), Gaps = 19/429 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++  A  + +A  +  L  +++ +K  G     +  +  ++  +  +  T  Q +
Sbjct: 507 WKNLKKKTKARVKHIAYNLIELYAKRRLQK--GFAYGPDSYLQHELEASFIYEDTPDQST 564

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A + + +DM  +  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  ILA QH++
Sbjct: 565 ATEAVKKDMENERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHHQ 624

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + V+ +        RR+ L  +  G+  IIIGTH L   ++++  L L+I
Sbjct: 625 TFSERLKDLPVTVDYLNRFRTAKERRETLADLESGRVDIIIGTHQLVNKAVKFKDLGLLI 684

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL         L +TATPIPRTL  + +   D+S IT  P  R PI+
Sbjct: 685 VDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLSTITTPPPNRYPIE 744

Query: 460 TVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + +I   R  E   R  V+  +  G + ++I  +IE  KE     +++R         + 
Sbjct: 745 SNVI---RFSEETIRDAVLYEIQRGGQVFFIHNRIENIKE--VAGMIQRLVP-----DAK 794

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + I HG+M     E +M SF NG   +L++TT+IE G+DV +A+ I I NA +FGL+ LH
Sbjct: 795 VGIGHGQMEGKKLEKLMLSFINGEFDVLVSTTIIESGLDVTNANTIFINNANNFGLSDLH 854

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           Q+RGRVGR  + + C  +  P   +++ +  R++ L+   +   GF IA +DL+ R  G+
Sbjct: 855 QMRGRVGRSNKKAFCYFITPPYSAMTEEARKRMTALEQFSELGSGFNIAMKDLEIRGAGD 914

Query: 633 ILGIKQSGM 641
           +LG +QSG 
Sbjct: 915 LLGGEQSGF 923


>gi|320537605|ref|ZP_08037541.1| transcription-repair coupling factor [Treponema phagedenis F0421]
 gi|320145523|gb|EFW37203.1| transcription-repair coupling factor [Treponema phagedenis F0421]
          Length = 1148

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 220/378 (58%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q + + ++  DM +   M R++ GDVG GKT VA+ A   A+  G Q   ++P
Sbjct: 606 PYEETDDQLTCVAEVKADMEKPVPMDRLVCGDVGYGKTEVAMRAAFKAIMGGKQVAFLSP 665

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+E + +  +N  + V  ++  + ++ ++K LE++ +G   I++GTH + Q  
Sbjct: 666 TTILAEQHFETLDERFKNFPVTVARMSRFITRSEQKKILEQLKNGDIDILVGTHRIIQKD 725

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+I+DE+ RFGV+ + +L Q  T    L ++ATPIPRTL ++ L   D+S +T
Sbjct: 726 VVFKDLGLMIIDEEQRFGVKDKERLKQMKTNVDCLALSATPIPRTLHMSLLKIRDMSLLT 785

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R+PI+TVI   +  ++V   ++  +  G + +++  ++E   E+           
Sbjct: 786 TPPQNRRPIETVIQEFDP-EKVAAAIRQEVERGGQVFYLHNRVETLDET---------AR 835

Query: 510 LHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           + ++    + I   HG+M+  + E +   F  G   +LIATT+IE GID+ +A+ III+ 
Sbjct: 836 MLQNLVPEVLIDSAHGQMNSDELEDIFKRFNMGGFHVLIATTIIENGIDIPNANTIIIDR 895

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+ +G++QL+QLRGRVGR ++ +   LLY     LS+ +  RL V+ + TE   GF IA 
Sbjct: 896 ADMYGVSQLYQLRGRVGRSDKKAYAYLLYPKDRALSEIAMKRLQVISDFTELGSGFKIAM 955

Query: 623 EDLKQRKEGEILGIKQSG 640
           +D++ R  G +LG +QSG
Sbjct: 956 KDMEIRGAGNLLGREQSG 973


>gi|221632687|ref|YP_002521908.1| transcription-repair coupling factor [Thermomicrobium roseum DSM
           5159]
 gi|221157121|gb|ACM06248.1| transcription-repair coupling factor [Thermomicrobium roseum DSM
           5159]
          Length = 1165

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 137/395 (34%), Positives = 206/395 (52%), Gaps = 15/395 (3%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           GI    + +  +++  + P+  T  Q  AI+++  DM +   M R+L GDVG GKT VAL
Sbjct: 593 GIAFGPDTQWDRELEESFPYEETPDQWRAIQEVKADMERPRPMDRLLCGDVGFGKTEVAL 652

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV  G Q  I+ P  +LA QHY   ++   +  + +E+++    +  +R  +E +
Sbjct: 653 RAAFKAVNNGYQVAILVPTTVLALQHYNTFRERLASYPVRIEMLSRLRSKREQRAIIEGL 712

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G   I+IGTH L Q  + + +L LVI+DE+HRFGV  +    +  T   VL MTATPI
Sbjct: 713 RAGTVDIVIGTHRLLQRDVAFKRLGLVIIDEEHRFGVAHKEHFKRLRTNVDVLTMTATPI 772

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICP 490
           PRTL L   G  D+S I   P  R P++T + P    D VI E +   ++ G + Y    
Sbjct: 773 PRTLYLALSGVRDLSVIATPPVDRTPVRTFVTPAR--DSVIREAILREIARGGQVY---- 826

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +   +  +     +R   L     +  A+ HG+M + + E ++  F      +LI T +
Sbjct: 827 -VVHNRVHSILDFAQRLRGLVPE--ARFAVAHGQMPEQELERIIVDFIERKYDVLICTAI 883

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRL 608
           IE G+D+   + III+ A+  GL QL+QLRGRVGR  + +   LLY    PLS  +  RL
Sbjct: 884 IESGVDIPSVNTIIIDQAQQLGLTQLYQLRGRVGRSHQRAYAYLLYDDRRPLSAEARARL 943

Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             ++   +   G  IA  DL+ R  G ILG +QSG
Sbjct: 944 EAIQEATELGAGLQIALRDLEIRGAGNILGPEQSG 978


>gi|288802661|ref|ZP_06408099.1| transcription-repair coupling factor [Prevotella melaninogenica
           D18]
 gi|288334811|gb|EFC73248.1| transcription-repair coupling factor [Prevotella melaninogenica
           D18]
          Length = 1118

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/435 (32%), Positives = 233/435 (53%), Gaps = 20/435 (4%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++E G   + +  +  ++  +  +  T  Q  A +++ QDM     M R++ GDVG GKT
Sbjct: 531 RREKGFAFSPDSFMQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKT 590

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A     Q  ++ P  +LA QHY+  KK  ++  + V+ ++        ++ 
Sbjct: 591 EVAIRAAFKAAVDNKQVAVLVPTTVLAFQHYQTFKKRLKDMPVRVDYLSRARSAKQTKQV 650

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           LE +A G+  I++GTH L   S++++ L L+I+DE+ +FGV  + KL Q  T    L M+
Sbjct: 651 LEDLAEGKIDILVGTHKLIGKSVKWHDLGLLIIDEEQKFGVSTKEKLRQLKTNVDTLTMS 710

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486
           ATPIPRTL  + +G  D+S +   P  R PI+T I   +   EVI + +   +S   + Y
Sbjct: 711 ATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIASFSH--EVIADAINFEMSRNGQVY 768

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++  +I     SN   +    N + ++     IAI HG+M   + E ++  F N    +L
Sbjct: 769 FVNDRI-----SNLPEIA---NLIKKYVPDCRIAIGHGQMKPEELEEIVMGFMNYDYDVL 820

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKN 603
           ++TT++E GID+ +A+ III +A  FGL+ LHQ+RGRVGR  + + C LL  P   L+  
Sbjct: 821 LSTTIVENGIDISNANTIIINDAHRFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNPE 880

Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFL---IAQPELHDSLLE 657
           +  RL  L+   D   GF +A +DL  R  G +LG +QSG  + L     Q  L+ +++E
Sbjct: 881 ARRRLEALETFSDLGSGFNLAMQDLDIRGAGNLLGSEQSGFMEDLGYETYQKILNQAVME 940

Query: 658 IARKDAKHILTQDPD 672
           +   + + +  ++ D
Sbjct: 941 LKNDEFQDLYEEEMD 955


>gi|94310893|ref|YP_584103.1| transcription-repair coupling factor [Cupriavidus metallidurans
           CH34]
 gi|93354745|gb|ABF08834.1| transcription-repair coupling factor [Cupriavidus metallidurans
           CH34]
          Length = 1150

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 147/431 (34%), Positives = 224/431 (51%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R         A ++  L  R+  ++    P+  + K  +    +  F  T  Q 
Sbjct: 557 QWDKAKRRAAQQIRDTAAELLNLYARRALREGFAFPL--QPKDYEAFAESFGFEETPDQA 614

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QH+
Sbjct: 615 AAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVAMLAPTTLLAEQHF 674

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +        + +  ++    +     A+++I  G   I+IGTH L  D +++ +L LV
Sbjct: 675 QTLSDRFAEWPVRIVELSRFKTKKEIDAAIKQINEGTVDIVIGTHKLLSDEVKFQRLGLV 734

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 735 IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 794

Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           KT    + R ++ + R  ++  L  G + Y++  ++E  E K +    +V          
Sbjct: 795 KTF---VRREEDGVIREAILRELKRGGQVYFLHNEVETIENKRAKLAELVPE-------- 843

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + IA+ HG+M + + E VM  F +    +L+ TT+IE GIDV  A+ I+I  A+ FGLA
Sbjct: 844 -ARIAVAHGQMHERELERVMRDFVSRRDNILLCTTIIETGIDVPTANTILIHRADKFGLA 902

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QLHQLRGRVGR    +   LL H    L++ +  RL  ++  E+   GF +A  DL+ R 
Sbjct: 903 QLHQLRGRVGRSHHQAYAYLLVHDVEGLTRQAQRRLEAIQQMEELGSGFYLAMHDLEIRG 962

Query: 630 EGEILGIKQSG 640
            GE+LG KQSG
Sbjct: 963 AGEVLGDKQSG 973


>gi|295425671|ref|ZP_06818358.1| transcription-repair coupling factor [Lactobacillus amylolyticus
           DSM 11664]
 gi|295064687|gb|EFG55608.1| transcription-repair coupling factor [Lactobacillus amylolyticus
           DSM 11664]
          Length = 1165

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 229/431 (53%), Gaps = 21/431 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L   ++ +K  G   + + ++ +K     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLINLYAARESEK--GFAFSPDDELQRKFDDAFPYVETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I  DM +   M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSIKEIKADMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++     A  +K +  +  G+  +++GTH +    + +  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKKIIAGLEDGKIDLVVGTHRILSKDVHFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IIDEEQRFGVKHKEKLKQMKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T ++   P    D  +  ++     G + +++  +I +  E     VV R   L  +  
Sbjct: 801 QTYVMEQTPSVIRDACLREMQ----RGGQVFYLHNRIGDIDE-----VVARLEKLLPN-- 849

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+Q
Sbjct: 850 ARIASAHGRMSQNQLEDILYRFLNREFDVLVTTTIIETGIDMPNVNTMIIEDADHYGLSQ 909

Query: 576 LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGR+GR   ++    LY  +  L++    RL  +++ TE   GF IA  DL  R  
Sbjct: 910 LYQLRGRIGRSARLAYAYFLYKQNKVLTEVREKRLDAIRDFTELGSGFKIAMRDLAIRGA 969

Query: 631 GEILGIKQSGM 641
           G +LG +Q G 
Sbjct: 970 GNMLGSQQHGF 980


>gi|320105780|ref|YP_004181370.1| transcription-repair coupling factor [Terriglobus saanensis SP1PR4]
 gi|319924301|gb|ADV81376.1| transcription-repair coupling factor [Terriglobus saanensis SP1PR4]
          Length = 1210

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 149/429 (34%), Positives = 228/429 (53%), Gaps = 21/429 (4%)

Query: 220  WT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            W  + AR + A  ++ A  + L   R+  +  +  P N    + ++      F+ T  Q 
Sbjct: 601  WAKTKARVKKAMQDMTAELLKLYAQRQSAEGFVFAPDN---NLQREFEDAFDFNETDDQL 657

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI DI +DM     M R+L GDVG GKT VA+ A   AV+   Q  ++ P  +L+ QHY
Sbjct: 658  SAIADIKRDMESTQPMDRLLCGDVGYGKTEVAMRAAFKAVQDSKQVAVLTPTTVLSFQHY 717

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +  KK      + VE+I+       ++K LE +A G+  I+IGTH L    I +  L L+
Sbjct: 718  QSFKKRFARFPVNVEMISRFRTAKEQKKILEDVADGKVDILIGTHRLLSKDIAFQDLGLL 777

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ + +L Q   A  VL M+ATPIPRTL ++ LG  D+S I   P  R  I
Sbjct: 778  VVDEEQRFGVRHKERLKQMRAAIDVLAMSATPIPRTLHMSLLGLRDMSVIETPPKDRMAI 837

Query: 459  KTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            +T++    + DE + R  +++ L    + Y++  ++E         +  +   L  H  +
Sbjct: 838  QTIVA---KFDEKLVRTAIEMELERSGQIYFVHNRVE-----TIYDLASQIRELVPH--A 887

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             +   HG+M + + E  M +F N    +L AT++IE G+D+  A+ III  A+  GL++L
Sbjct: 888  RVITAHGQMGEGELEKAMLAFMNYEFDVLCATSIIENGLDIPRANTIIINRADRHGLSEL 947

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            +QLRGRVGR    +   LL  P   L++ +  RL+ LK   D   GF IA  DL+ R  G
Sbjct: 948  YQLRGRVGRANRRAYAYLLIPPDNELTEVARRRLAALKEFSDLGAGFKIAALDLELRGAG 1007

Query: 632  EILGIKQSG 640
             +LG +QSG
Sbjct: 1008 NMLGGEQSG 1016


>gi|323136889|ref|ZP_08071969.1| transcription-repair coupling factor [Methylocystis sp. ATCC 49242]
 gi|322397650|gb|EFY00172.1| transcription-repair coupling factor [Methylocystis sp. ATCC 49242]
          Length = 1181

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/382 (35%), Positives = 213/382 (55%), Gaps = 23/382 (6%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T+ Q +AI+ +L D++    M R++ GDVG GKT VAL A   A   G Q  ++A
Sbjct: 628 FPYDETEDQLAAIEAVLDDLASGRPMDRLVCGDVGFGKTEVALRAAFCAAINGKQVAVVA 687

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LA+QHY+   +      I +  ++  +  A  R+  + +  G+  I++GTHA+   
Sbjct: 688 PTTLLARQHYKTFSERFAGLPIKIGRLSRMVGAAEARETKKELGEGKVDILVGTHAILGK 747

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + +  L LVI+DE+  FGV  + +L +     HVL ++ATPIPRTL L   G  ++S I
Sbjct: 748 GVNFKDLGLVIIDEEQHFGVGHKERLKELRAEVHVLTLSATPIPRTLQLAMTGVRELSLI 807

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
           T  P  R  +++ I P    D +I R + +L E   G +A+++CP+IE+ +E+   +   
Sbjct: 808 TTPPVDRLAVRSFISP---FDPLIVR-EALLRERYRGGQAFFVCPRIEDLEEA---AAFL 860

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           R N     F     I HG+MS  + E  M +F +G   +L++TT++E G+D+  A+ +I+
Sbjct: 861 RENLAEAKFV----IAHGQMSPSELEDKMSAFYDGRFDILLSTTIVESGLDIPSANTLIV 916

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK----NSYTRLSVLKNTED---GF 618
             A+ FGLAQL+QLRGRVGR +  +    L+  P ++     +  RL VL+  +    GF
Sbjct: 917 WRADMFGLAQLYQLRGRVGRSK--TRAYALFTTPANRAITPQAQKRLEVLQTLDTLGAGF 974

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL  R  G +LG +QSG
Sbjct: 975 QLASHDLDIRGAGNLLGEEQSG 996


>gi|154248182|ref|YP_001419140.1| transcription-repair coupling factor [Xanthobacter autotrophicus
           Py2]
 gi|154162267|gb|ABS69483.1| transcription-repair coupling factor [Xanthobacter autotrophicus
           Py2]
          Length = 1168

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 137/385 (35%), Positives = 209/385 (54%), Gaps = 31/385 (8%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q++AI  +L D++  + M R++ GDVG GKT VAL A  A   +G Q  ++ P
Sbjct: 617 PYEETDDQDAAIDAVLDDLASGHPMDRLICGDVGFGKTEVALRAAFAVALSGKQVAVVVP 676

Query: 330 IGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
             +LA+QH+    E  K    N      ++TG    A ++     IA G   I++GTHAL
Sbjct: 677 TTLLARQHFKTFSERFKGLPVNVAQASRMVTGKDLTAVKKG----IADGTVDIVVGTHAL 732

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
              +I +  L LVIVDE+  FGV  + +L Q     HVL +TATPIPRTL L   G  ++
Sbjct: 733 LGKAISFKDLGLVIVDEEQHFGVSHKERLKQLRAEVHVLTLTATPIPRTLQLAMTGVREL 792

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I   P  R  ++T I P + +  V E L      G +++++ P+IE+  E        
Sbjct: 793 SIIATPPVDRLAVRTFITPFDPL-VVREALLRERYRGGQSFYVVPRIEDLAE-------- 843

Query: 506 RFNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
               + E   +S     +A+ HG+++    E +M +F +G   +L++TT++E G+DV +A
Sbjct: 844 ----VREFLAASVPEVKVAVAHGQLAAGALEDIMTAFYDGQYDVLLSTTIVESGLDVPNA 899

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED-- 616
           + +I+  A+ FGLAQL+QLRGRVGR +  +  I       P++  +  RL VL++ E   
Sbjct: 900 NTLIVHRADMFGLAQLYQLRGRVGRAKARAYAIFTVPATKPMTVQAERRLKVLQSLETLG 959

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640
            GF +A  DL  R  G +LG +QSG
Sbjct: 960 AGFQLASHDLDIRGAGNLLGDEQSG 984


>gi|298483734|ref|ZP_07001908.1| transcription-repair coupling factor [Bacteroides sp. D22]
 gi|298270151|gb|EFI11738.1| transcription-repair coupling factor [Bacteroides sp. D22]
          Length = 1141

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/410 (34%), Positives = 218/410 (53%), Gaps = 19/410 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 543 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 602

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  ++  +     VE ++   
Sbjct: 603 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 662

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G   I+IGTH +    +Q+  L L+IVDE+ +FGV  + KL Q   
Sbjct: 663 TAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 722

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   N  +EVI + +   
Sbjct: 723 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 780

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + +++  +I    E   ++++ER      H     +AI HG+M   + E ++  F
Sbjct: 781 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTELEKIILDF 832

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 833 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 891

Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PPLS        RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 892 PPLSSLTTEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 941


>gi|2073486|emb|CAA72474.1| transcription repair coupling factor [Rickettsia prowazekii]
          Length = 989

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 147/441 (33%), Positives = 240/441 (54%), Gaps = 39/441 (8%)

Query: 237 QIALLLMRKQFKKEIGI--PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           +I+L L++   K+++ I  PI ++ +   K   N PFS T+ Q +AI DI +D++    M
Sbjct: 408 EISLHLIQIAAKRKLNISTPIELDLEAYDKFCANFPFSETEDQLTAINDIREDLTNGMLM 467

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346
            R++ GDVG GKT VA+ A+    ++      Q  ++ P  IL  QH+    E  K +  
Sbjct: 468 DRLICGDVGFGKTEVAMRAVFMVAKSLNEYLPQVAVVVPTTILCSQHFSRFIERFKGFGL 527

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           N + +  +I+       R +    +A G+ +IIIGTHAL   + +++ L L+I+DE+  F
Sbjct: 528 NIKQLSSVISSKEANIIRLE----LASGKINIIIGTHALLHKNTKFFNLKLLIIDEEQHF 583

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  ++T ++P  
Sbjct: 584 GVSQKEFLKSLKSSTHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMP-- 641

Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAII 521
             D VI R   +L E   G +++++ P+I+  E  E   + +V            S  I 
Sbjct: 642 -FDPVIIR-DALLREHFRGGRSFYVAPRIKDMEDIEKQLKQIVPEL---------SYKIA 690

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M+    + VM  F  G   +LI+TT+IE GID+ +A+ +II  A+  GL+QL+QLRG
Sbjct: 691 HGKMTPSKIDEVMSEFYVGKFDILISTTIIESGIDIAEANTMIIHKADTLGLSQLYQLRG 750

Query: 582 RVGRGE--EISSCILLYHPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636
           R+GRG+    +   +  +  ++ +S  RL +++N+     GF IA  D   R  G ++G 
Sbjct: 751 RIGRGKIRGYAYLTVASNKKITSHSLRRLEIIQNSCSLGSGFTIASHDADLRGFGNLIGE 810

Query: 637 KQSGMPKFLIAQPELHDSLLE 657
           +QSG  K +    EL+  +LE
Sbjct: 811 EQSGQIKEV--GTELYQEMLE 829


>gi|317402005|gb|EFV82605.1| transcription-repair coupling factor [Achromobacter xylosoxidans
           C54]
          Length = 1160

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 145/408 (35%), Positives = 208/408 (50%), Gaps = 17/408 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q     G   N+     Q       F  T  Q +AI+ ++ DM+    M R++ 
Sbjct: 586 LLALYAQRAAREGFAFNLPLNDYQAFAEGFGFEETADQAAAIEAVIADMTSGRPMDRLVC 645

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH +       +  + V  ++   
Sbjct: 646 GDVGFGKTEVALRAAFLAVANGKQVALLCPTTLLAEQHAQTFSDRFADWPVRVVELSRFR 705

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                  A+E I  G+  I+IGTH +    +++ +L LVI+DE+HRFGV+Q+  L     
Sbjct: 706 SAKEVSAAIEGINDGRVDIVIGTHKILSKDVKFKRLGLVIIDEEHRFGVRQKEALKALRA 765

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV- 478
              VL +TATPIPRTL ++  G  D S I   P  R  IKT +    R D    R  ++ 
Sbjct: 766 EVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTFV---RREDGSTLREALLR 822

Query: 479 -LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            L  G + Y++  ++E     N R+ +E          + IA+ HG+M + D E VM  F
Sbjct: 823 ELKRGGQCYFLHNEVETIH--NRRARLEELVP-----EARIAVAHGQMPERDLEQVMKGF 875

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY- 596
                 +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR    +   LL  
Sbjct: 876 YQQRYNVLLCTTIIETGIDVPSANTIVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTP 935

Query: 597 -HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
               ++ N+  RL  ++  E+   GF +A  DL+ R  GE+LG  QSG
Sbjct: 936 GEDAITSNAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEVLGDSQSG 983


>gi|303239799|ref|ZP_07326323.1| transcription-repair coupling factor [Acetivibrio cellulolyticus
           CD2]
 gi|302592736|gb|EFL62460.1| transcription-repair coupling factor [Acetivibrio cellulolyticus
           CD2]
          Length = 1177

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 211/379 (55%), Gaps = 19/379 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q   I++I +DM     M R+L GDVG GKT VA+ A+  AV  G Q   + P
Sbjct: 632 PYQETDDQLKCIEEIKRDMESNKPMDRLLCGDVGYGKTEVAIRAIFKAVMDGKQVAYLVP 691

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQ Y   K+  ++  + VE+++    Q  ++  L+ +  G   ++IGTH L Q  
Sbjct: 692 TTVLAQQQYNNFKERMKDFPVTVEMVSRFRTQTEQKHILKDVKAGMVDVLIGTHRLLQKD 751

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I +  L L+++DE+ RFGV  + K+        VL +TATPIPRTL ++ +G  DIS I 
Sbjct: 752 IAFKNLGLLVIDEEQRFGVMHKEKIKNMRANVDVLTLTATPIPRTLHMSMVGIKDISTIE 811

Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVER 506
           + P  R P++T ++  N  +EVI E +   ++   + +++  ++     K +  +++V  
Sbjct: 812 DPPEERYPVQTYVMEHN--NEVIKEAINREMARNGQVFYLYNRVRSINVKAAEIKNMVP- 868

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                    + IA+ HG+M++ + E +M  F NG   +L+ T +IE G+D+ + + II+E
Sbjct: 869 --------DARIAVAHGQMNESELEDIMFRFINGEYDVLVCTVIIESGLDMPNVNTIIVE 920

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIA 621
           +++  GLAQL+QLRGRVGR   ++   + Y     LS+ +  RL  +K  TE   GF IA
Sbjct: 921 DSDKMGLAQLYQLRGRVGRSNRMAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIA 980

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G +LG +Q G
Sbjct: 981 MRDLQIRGAGNLLGAQQHG 999


>gi|15836650|ref|NP_297338.1| transcription-repair coupling factor [Xylella fastidiosa 9a5c]
 gi|9104811|gb|AAF82858.1|AE003858_12 transcription-repair coupling factor [Xylella fastidiosa 9a5c]
          Length = 1193

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 229/431 (53%), Gaps = 23/431 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W+   R+       +A ++  +  R+Q +   G+ + ++  + +      PF  T  Q 
Sbjct: 597  QWSKAKRKAAEKVRDVAAELLEIQARRQARA--GLALRIDRTMYEPFAAGFPFEETPDQL 654

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+  L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++ P  +LA+QHY
Sbjct: 655  AAIETTLRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHY 714

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +    +  I VE+++        +  L++++ G   +I+GTH L Q  +++  L LV
Sbjct: 715  RNFRDRFADYPIRVEVLSRFKSTKEIKAELQKVSEGTMDVIVGTHRLLQPDVKFKDLGLV 774

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S I   P  R  +
Sbjct: 775  IVDEEQRFGVRQKEALKSLRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAV 834

Query: 459  KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHF 514
            +T I P +   + E  +R    L+ G + Y++   +E   + + +   +V          
Sbjct: 835  QTFITPWDNALLHEAFQR---ELARGGQLYFLHNDVESIGRMQRDLAQLVPE-------- 883

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ III  A+ FGLA
Sbjct: 884  -ARIGIAHGQMPERELERVMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLA 942

Query: 575  QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
            QLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF +A  DL+ R 
Sbjct: 943  QLHQLRGRVGRSHHRAYAYLVVPDRRSMTADAEKRLEAIASMDELGAGFTLATHDLEIRG 1002

Query: 630  EGEILGIKQSG 640
             GE+LG  QSG
Sbjct: 1003 AGELLGEDQSG 1013


>gi|67458759|ref|YP_246383.1| transcription-repair coupling factor [Rickettsia felis URRWXCal2]
 gi|75536784|sp|Q4UMJ0|MFD_RICFE RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|67004292|gb|AAY61218.1| Transcription-repair coupling factor [Rickettsia felis URRWXCal2]
          Length = 1142

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 145/441 (32%), Positives = 239/441 (54%), Gaps = 39/441 (8%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           +IAL L++   K+++    +VE  + +  K   N PFS T+ Q +AI DI +D+     M
Sbjct: 540 EIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLTAINDIKEDLRNGMLM 599

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346
            R++ GDVG GKT VA+ A+    ++      Q  ++ P  IL  QH+    E  K +  
Sbjct: 600 DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGL 659

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           N + +  +I+    +  R +    +  G+ +IIIGTH+L   + +++ L L+I+DE+  F
Sbjct: 660 NIKQLSSVISAKEAKIIRSE----LESGKINIIIGTHSLLHKNTKFFNLKLLIIDEEQHF 715

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  ++T+++P  
Sbjct: 716 GVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTMVMP-- 773

Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAII 521
             D VI R   +L E   G +++++ P+I+  E  E   + +V            S  I 
Sbjct: 774 -FDPVIIR-DALLREHFRGGRSFYVVPRIKDIEDIEKQLKQIVPEL---------SYKIA 822

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M+    + VM  F  G   +L++TT+IE GID+ +A+ ++I  A+  GL+QL+QLRG
Sbjct: 823 HGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMVIHKADMLGLSQLYQLRG 882

Query: 582 RVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636
           R+GRG+      L    H  ++ +S  RL +++N+     GF IA  D+  R  G ++G 
Sbjct: 883 RIGRGKVRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGE 942

Query: 637 KQSGMPKFLIAQPELHDSLLE 657
           +QSG  K +    EL+  +LE
Sbjct: 943 EQSGQIKEV--GTELYQEMLE 961


>gi|300691385|ref|YP_003752380.1| transcription-repair ATP-dependent coupling factor, helicase
           [Ralstonia solanacearum PSI07]
 gi|299078445|emb|CBJ51097.1| transcription-repair ATP-dependent coupling factor, helicase
           [Ralstonia solanacearum PSI07]
          Length = 1143

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 145/415 (34%), Positives = 218/415 (52%), Gaps = 23/415 (5%)

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A ++  L  R+  ++    P+       +    +  F  T  Q +AI  ++ DM+    M
Sbjct: 566 AAELLNLYARRALRQGFAFPLTPNDY--EAFAESFGFDETPDQAAAIAAVIADMTSGKPM 623

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QHY+ +     +  + +  
Sbjct: 624 DRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHYQTLADRFADWPVRIAE 683

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           I+    +     A+E I  G   I+IGTH L    +++ +L LVI+DE+HRFGV+Q+  L
Sbjct: 684 ISRFKNKKEIDAAVEAINAGTIDIVIGTHKLLSPDVKFDRLGLVIIDEEHRFGVRQKEAL 743

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                   VL +TATPIPRTL +   G  D S I   P  R  IKT +    R ++ + R
Sbjct: 744 KTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFV---RREEDGVLR 800

Query: 475 LKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
             ++  L  G + Y++  ++E  E K +   ++V           + +A+ HG+M + + 
Sbjct: 801 EAILRELKRGGQVYFLHNEVETIENKRAKLEALVPE---------ARVAVAHGQMHEREL 851

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E VM  F      +L+ TT+IE GIDV  A+ I+I  ++ FGLAQLHQLRGRVGR    +
Sbjct: 852 ERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRSDKFGLAQLHQLRGRVGRSHHQA 911

Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
              LL H    L+K +  RL  ++  E+   GF +A  DL+ R  GE+LG KQSG
Sbjct: 912 YAYLLVHDADGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSG 966


>gi|58038544|ref|YP_190508.1| transcription-repair coupling factor [Gluconobacter oxydans 621H]
 gi|58000958|gb|AAW59852.1| Transcription-repair coupling factor [Gluconobacter oxydans 621H]
          Length = 1173

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/411 (33%), Positives = 220/411 (53%), Gaps = 20/411 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF  T+ Q  AI D+L+DMS    M R++ GDVG GKT VAL A   A  +G Q  ++ P
Sbjct: 615  PFVETEDQSRAIADVLEDMSAGRPMDRLVCGDVGFGKTEVALRAAFVAALSGMQVAVVVP 674

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QH+       +   + V  ++  +      K  E +A G   I++GTHAL   +
Sbjct: 675  TTLLARQHFRSFSARFEGFPVNVAQLSRLITPKEATKVREGMADGTVDIVVGTHALLAKT 734

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + + +L L+I+DE+  FGV  + +L       HVL ++ATP+PRTL L+  G  ++S I 
Sbjct: 735  VSFERLGLLIIDEEQHFGVAHKERLKALREDVHVLTLSATPLPRTLQLSLSGVREMSLIA 794

Query: 450  EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
              P  R  ++T I P +   I E I+R +     G + + + P++     ++   + ER 
Sbjct: 795  TPPTDRLAVRTFITPFDSVMIREAIQRERF---RGGQIFCVVPRL-----ADMDRMAERL 846

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              +     +  A  HGR++  + E VM  F +G   +L++T ++E G+D+   + III  
Sbjct: 847  TEIVPDAKTVQA--HGRLTPTELERVMTEFADGKYDILLSTNIVESGLDMPSVNTIIIHR 904

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622
            A+ FGL QL+QLRGRVGRG++     + +    PLS +S  RL V++  +    GF +A 
Sbjct: 905  ADMFGLGQLYQLRGRVGRGKQRGYAYMTWPQTRPLSPSSEKRLEVMQTLDSLGAGFTLAS 964

Query: 623  EDLKQRKEGEILGIKQSGMPKFL---IAQPELHDSLLEIARKDAKHILTQD 670
             DL  R  G +LG +QSG  K +   + Q  L D+++++ R+  +    +D
Sbjct: 965  HDLDLRGAGNLLGDEQSGHIKEVGIELYQQMLEDAVIDMRRERGERQDDED 1015


>gi|124025758|ref|YP_001014874.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
            NATL1A]
 gi|123960826|gb|ABM75609.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
            NATL1A]
          Length = 1167

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/435 (31%), Positives = 235/435 (54%), Gaps = 20/435 (4%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I L+ +  +  KE G     +G    ++  + P++ T  Q +A   +  DM  +  M R+
Sbjct: 586  IDLIKLYAERSKEKGYKFPCDGPWQSELEDSFPYALTPDQATATSQVKSDMESEKPMDRL 645

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GDVG GKT VA+ A+  A+ +G Q  ++AP  +L+QQH+  I        I V ++  
Sbjct: 646  VCGDVGFGKTEVAIRAIFKAITSGKQIALLAPTTVLSQQHWRTISDRFAPYPIKVSLLNR 705

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                + ++  +  +  GQ   ++GTH L    + Y  L L+++DE+ RFGV Q+ K+ + 
Sbjct: 706  FKTNSEKKHIVSGLKAGQIDAVVGTHQLLNKKLVYKDLGLLVIDEEQRFGVNQKEKIKEL 765

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LK 476
              +  VL ++ATPIPRTL ++  G  ++S IT  P  R+PIKT + P++  +E+I   + 
Sbjct: 766  KKSVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLAPLD--NEIIRSAIS 823

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              +  G + ++I P+I+         V E+   +  +    + I HG+M +   E+ M +
Sbjct: 824  QEIDRGGQIFYIVPRIK-----GIEDVAEKLKIMIPNV--KLLIAHGQMEEGALENAMLA 876

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F  G   +L+ TT++E G+D+   + I+IE++  FGL+QL+QLRGRVGR   + +   L+
Sbjct: 877  FNAGEADILLCTTIVESGLDIPRVNTILIEDSHKFGLSQLYQLRGRVGRS-GVQAHAWLF 935

Query: 597  HPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIA 647
            +P    L++ S  RL  +K   D   G+ +A  D++ R  G ILGI+QSG  +   F + 
Sbjct: 936  YPSDEKLNETSRQRLKAIKEFSDLGSGYQLAMRDMEIRGVGNILGIEQSGQMETIGFDLY 995

Query: 648  QPELHDSLLEIARKD 662
               L +++ EI  +D
Sbjct: 996  MELLQETIAEIQGQD 1010


>gi|295397825|ref|ZP_06807889.1| transcription-repair coupling factor [Aerococcus viridans ATCC
           11563]
 gi|294973922|gb|EFG49685.1| transcription-repair coupling factor [Aerococcus viridans ATCC
           11563]
          Length = 1233

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/380 (36%), Positives = 210/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q  +I +I +DM  +  M R+L GDVG GKT VA+ A+  A+  G Q   + P
Sbjct: 621 PYTETDDQVRSIAEIKKDMEVEKPMDRLLVGDVGFGKTEVAMRAVFKALMEGKQVAFLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHYE   +   +    + +++    +A + + +  +  GQ  I+IGTH +    
Sbjct: 681 TTVLAQQHYETFTERFADWPFEIGLLSRFRSKAQQNETIAGLKKGQVDIVIGTHRILSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L++VDE+ RFGV+ + KL        VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 741 VEFLDLGLLVVDEEQRFGVKAKEKLKALKANVDVLTLTATPIPRTLNMSMLGVRDLSVIE 800

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVE 505
             PA R P++T ++  N   + + IER   +  +G+  Y      QIEEK       V E
Sbjct: 801 TPPANRYPVQTFVMEQNYGAVKDAIER--EIARDGQVFYLFNNVAQIEEKAAFINELVPE 858

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +AI HG+M+ +  E+VM  F  G   +L+ TT+IE G+D+ +A+ +++
Sbjct: 859 ----------ARVAIAHGQMTVVQLENVMMDFVLGEFDVLVTTTIIETGVDIPNANTLLV 908

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
           E A+  GL+ L+QLRGRVGR   I+    +Y P   LS+ S  RL  L++ TE   GF I
Sbjct: 909 EGADRMGLSTLYQLRGRVGRSTRIAYAYFMYRPDKMLSEVSEKRLMALRDFTELGSGFKI 968

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +Q G
Sbjct: 969 AMRDLSIRGAGNLLGKQQHG 988


>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040624|gb|ACT57420.1| transcription-repair coupling factor [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1187

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/395 (34%), Positives = 214/395 (54%), Gaps = 19/395 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P+ V   +  + ++  P   T+ QE AI  ++QD+S    M R++ GDVG GKT +AL A
Sbjct: 607 PLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRA 666

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
              AV  G Q  ++AP  +L +QH+    +  Q   + +  I+  +         + I  
Sbjct: 667 AFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITE 726

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           GQ  I+IGTHAL    I +  L L+I+DE+  FGV+ +  L +  T  HVL ++ATPIPR
Sbjct: 727 GQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPR 786

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL L   G  ++S I+  P  R   +T I   + +  V E L      G +++++CP++ 
Sbjct: 787 TLQLAITGVRELSLISMPPINRIACRTSISIFDPL-VVRETLMREYYRGGQSFYVCPRLS 845

Query: 494 --EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
             EK  +  +S V             IA+ HG+MS  + E  M++F  G   +L++T+++
Sbjct: 846 DLEKCYTFLQSEVPELK---------IAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIV 896

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRL 608
           E G+D+  A+ +I++ A+ FGLAQL+QLRGRVGR  +I+S  L   P   PL+  +  RL
Sbjct: 897 ESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRS-KIASFALFLLPENRPLTAAAQKRL 955

Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            +L++      GF +A  DL  R  G +LG +QSG
Sbjct: 956 RILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSG 990


>gi|253681221|ref|ZP_04862019.1| transcription-repair coupling factor [Clostridium botulinum D str.
           1873]
 gi|253562459|gb|EES91910.1| transcription-repair coupling factor [Clostridium botulinum D str.
           1873]
          Length = 1169

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 146/430 (33%), Positives = 224/430 (52%), Gaps = 21/430 (4%)

Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  +  + + A +E+    + L  +R   K   G   N +    ++     P+  T  Q
Sbjct: 573 EWIKAKTKVKKAINEIAEELVKLYAIRSTLK---GHKFNKDTIWQKQFEEEFPYDETPDQ 629

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            +AI++I  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QH
Sbjct: 630 LTAIQEIKSDMESGKAMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAEQH 689

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y  + +   +  + +E+I+     A  +  L  +  G   I+IGTH + Q  +++  L L
Sbjct: 690 YTNLIQRFCDFPVNIEMISRFKTSAQVKSILNEVRVGNVDILIGTHRILQKDVEFKDLGL 749

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV  + K+        VL +TATPIPRTL ++  G  DIS I   P  R P
Sbjct: 750 LIVDEEQRFGVTHKEKIKNLKKNVDVLTLTATPIPRTLHMSLTGIRDISVIETPPEERYP 809

Query: 458 IKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-T 515
           ++T ++  N  D++IE  +   L    + Y++  ++         S+ E    L + F  
Sbjct: 810 VQTYVVEFN--DQLIEDAISRELDRDGQVYFVYNRV--------GSIKEMAAYLAKMFPN 859

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           S I I HG+M + + E VM  F      +L+ TT+IE G+D+ +A+ +II +A+ FGL+Q
Sbjct: 860 SKIGIAHGQMPERELEKVMYDFMRKEYDILVCTTIIETGLDIQNANTMIIYDADRFGLSQ 919

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR   ++   L Y     L++ +  RL  +K+ TE   GF IA  DL+ R  
Sbjct: 920 LYQLRGRVGRSNRMAYAYLTYKKDKVLTEVAEKRLKAIKDFTELGSGFKIAMRDLEIRGA 979

Query: 631 GEILGIKQSG 640
           G ++G  Q G
Sbjct: 980 GNLIGAAQHG 989


>gi|294808313|ref|ZP_06767070.1| transcription-repair coupling factor [Bacteroides xylanisolvens SD
           CC 1b]
 gi|294444475|gb|EFG13185.1| transcription-repair coupling factor [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 1161

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/409 (33%), Positives = 217/409 (53%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 563 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 622

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  ++  +     VE ++   
Sbjct: 623 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 682

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G   I+IGTH +    +Q+  L L+IVDE+ +FGV  + KL Q   
Sbjct: 683 TAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 742

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   N  +EVI + +   
Sbjct: 743 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 800

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + +++  +I    E   ++++ER      H     +AI HG+M   + E ++  F
Sbjct: 801 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTELEKIILDF 852

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 853 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAP 912

Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           P   L+     RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 913 PLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 961


>gi|329925538|ref|ZP_08280412.1| transcription-repair coupling factor [Paenibacillus sp. HGF5]
 gi|328939821|gb|EGG36161.1| transcription-repair coupling factor [Paenibacillus sp. HGF5]
          Length = 1175

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/378 (34%), Positives = 211/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI +I +DM Q   M R+L GDVG GKT VA+ A   A   G Q  ++ P
Sbjct: 610 PYDETPDQLRAITEIKKDMEQNRPMDRLLCGDVGYGKTEVAVRAAFKAAIEGKQVAVLVP 669

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE  ++   N  I +++++    +  + + ++++  G   I+IGTH L    
Sbjct: 670 TTILAQQHYETFRERFANYPINIQVLSRFRSRKEQNETIKKVKQGSVDILIGTHRLLSQD 729

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I +  L L+IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730 IVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIE 789

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T ++  ++  + E IER    L+ G + Y++  +++       + +  + 
Sbjct: 790 TPPENRFPVQTYVVEHSQTLVREAIER---ELARGGQVYYLYNRVQ-----GIQEMAAQI 841

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           + L     + + + HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +
Sbjct: 842 SMLVPE--ARVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHD 899

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+QLRGRVGR   I+     Y     L++ +  RL  +K  TE   GF IA 
Sbjct: 900 ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAM 959

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G +LG +Q G
Sbjct: 960 RDLSIRGAGNLLGAEQHG 977


>gi|262407555|ref|ZP_06084103.1| transcription-repair coupling factor [Bacteroides sp. 2_1_22]
 gi|262354363|gb|EEZ03455.1| transcription-repair coupling factor [Bacteroides sp. 2_1_22]
          Length = 1124

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/409 (33%), Positives = 217/409 (53%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 526 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 585

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  ++  +     VE ++   
Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 645

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G   I+IGTH +    +Q+  L L+IVDE+ +FGV  + KL Q   
Sbjct: 646 TAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 705

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   N  +EVI + +   
Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 763

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + +++  +I    E   ++++ER      H     +AI HG+M   + E ++  F
Sbjct: 764 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTELEKIILDF 815

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 816 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAP 875

Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           P   L+     RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 876 PLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 924


>gi|255691931|ref|ZP_05415606.1| transcription-repair coupling factor [Bacteroides finegoldii DSM
           17565]
 gi|260622336|gb|EEX45207.1| transcription-repair coupling factor [Bacteroides finegoldii DSM
           17565]
          Length = 1123

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 140/410 (34%), Positives = 217/410 (52%), Gaps = 19/410 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 526 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 585

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  +   +     VE ++   
Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRDRLKGLPCRVEYLSRAR 645

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G  +I+IGTH +    +Q+  L L+IVDE+ +FGV  + KL Q   
Sbjct: 646 TAAQSKAVLKGLKEGDVNILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 705

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   N  +EVI + +   
Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 763

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + +++  +I    E   ++++ER      H     +AI HG+M     E ++  F
Sbjct: 764 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPAQLEKIILDF 815

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 816 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 874

Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PPLS        RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 875 PPLSSLTAEGKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 924


>gi|153807964|ref|ZP_01960632.1| hypothetical protein BACCAC_02250 [Bacteroides caccae ATCC 43185]
 gi|149129573|gb|EDM20787.1| hypothetical protein BACCAC_02250 [Bacteroides caccae ATCC 43185]
          Length = 1141

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 139/410 (33%), Positives = 218/410 (53%), Gaps = 19/410 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 544 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATVDVKTDMESDRPMDRLVC 603

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  ++  +     VE ++   
Sbjct: 604 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 663

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G   I+IGTH +    +++  L L+IVDE+ +FGV  + KL Q   
Sbjct: 664 TAAQAKAVLKELKEGDVGILIGTHRILGKDVRFKDLGLLIVDEEQKFGVSVKEKLRQLKV 723

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   N  +EVI + +   
Sbjct: 724 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 781

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + +++  +I    E   ++++ER      H     +AI HG+M   + E ++  F
Sbjct: 782 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPAELEKIIFDF 833

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 834 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 892

Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PPLS        RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 893 PPLSSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 942


>gi|297545520|ref|YP_003677822.1| transcription-repair coupling factor [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296843295|gb|ADH61811.1| transcription-repair coupling factor [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 1163

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 169/542 (31%), Positives = 269/542 (49%), Gaps = 45/542 (8%)

Query: 116 VFFEGRKITVTGKIK---KLKNRIIMVHPHYIFHNSQDVNFPL--IEAVYSLPTGLSVDL 170
           +F + RK   T KIK   K+K+   +    Y+ H    VN+ +   E +  +     +  
Sbjct: 476 IFGQTRKSKKTVKIKNADKIKSFTELEVGSYVVH----VNYGIGKYEGIEKIKVDGIIRD 531

Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARER 227
           + KII      L V  E +  DL+QK   P+         NP K       EW    R+ 
Sbjct: 532 YLKIIYAGGDTLFVPVEQL--DLVQKYVGPT--------DNPPKLNKLGGSEWLKAKRKA 581

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
               E LA  +  L  ++Q  K  G   + +    ++     P+  T+ Q   IK+I +D
Sbjct: 582 KKAVEDLAKDLLQLYAKRQIAK--GHAFSPDTPWQREFEEQFPYEETEDQLRCIKEIKED 639

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           M +   M R+L GDVG GKT VAL A   AV  G Q   + P  ILA QHY    +  + 
Sbjct: 640 MEKDKPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVAFLCPTTILAYQHYTNFMERFKE 699

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + +E+++       + + ++ +A G   II+GTH L Q+ +++  L L+I+DE+ RFG
Sbjct: 700 FPVKIEMLSRFRTPKEQAQIIKGLAEGTIDIIVGTHRLLQNDVKFKDLGLLIIDEEQRFG 759

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           V  + K+ +      VL ++ATPIPRTL ++ +G  D+S +   P  R P++T ++  N 
Sbjct: 760 VVHKEKIKKLKENIDVLTLSATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNE 819

Query: 468 --IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHG 523
             I + I R    +  G + Y++  ++         + +E+  SL +       +A+ HG
Sbjct: 820 ELIKDAILR---EIGRGGQVYFVYNRV---------NGIEKMASLVKDLVPGCRVAVAHG 867

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M +   E VM  F NG   +L++TT+IE G+D+ + + II+ +A+  GL+QL+QLRGRV
Sbjct: 868 QMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGLSQLYQLRGRV 927

Query: 584 GRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQ 638
           GR   ++     Y     LS+ +  RL  +K  TE   GF IA  DL+ R  G +LG +Q
Sbjct: 928 GRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQ 987

Query: 639 SG 640
            G
Sbjct: 988 HG 989


>gi|256419455|ref|YP_003120108.1| transcription-repair coupling factor [Chitinophaga pinensis DSM
           2588]
 gi|256034363|gb|ACU57907.1| transcription-repair coupling factor [Chitinophaga pinensis DSM
           2588]
          Length = 1126

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/400 (33%), Positives = 211/400 (52%), Gaps = 15/400 (3%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K + G P + +  +  ++  +  +  T  Q  A  D+ +DM     M R++ GDVG GKT
Sbjct: 542 KAQTGFPHSPDTYLQTELEASFLYEDTPDQSKATADVKRDMQSPAPMDRLVCGDVGFGKT 601

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            +A+ A   ++  G QA ++ P  ILA QHY+      ++    V+ +        +++ 
Sbjct: 602 EIAVRAAFKSIVDGKQAAVLVPTTILAFQHYKTFSDRLKDFPCTVDYLNRFKSAKEKKET 661

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L+R+A G+  IIIGTHAL    +++  L +++VDE+ +FGV  + KL Q       L +T
Sbjct: 662 LQRLAEGKIDIIIGTHALLSKDVKFKDLGVMVVDEEQKFGVAAKEKLKQLKINVDTLTLT 721

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL  + +G  D+S I   P  R+PI+T +   +  D + + +      G + Y+
Sbjct: 722 ATPIPRTLQFSLMGARDLSVINTPPPNRQPIETEVHVFDH-DLIRDAIYYETERGGQVYF 780

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +  ++  K      S+++           SIA  HG+M     E V+  F +    +L+ 
Sbjct: 781 VYNRV--KGLGEMSSLIKGLCP-----DLSIATAHGQMEGHQLEEVILDFIDRKYDVLVC 833

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NS 604
           T ++E G+D+ +A+ III NA HFGL+ LHQLRGRVGR  + + C LL  PP+S    +S
Sbjct: 834 TNIVESGVDIPNANTIIINNAHHFGLSDLHQLRGRVGRSNKKAFCYLL-APPISTLPGDS 892

Query: 605 YTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             RL  L+   +   GF IA  DL  R  G +LG +QSG 
Sbjct: 893 RKRLQTLEQHSELGSGFQIAMRDLDIRGAGNLLGGEQSGF 932


>gi|3511015|gb|AAD03810.1| transcription-repair coupling factor [Lactobacillus sakei]
          Length = 1045

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 144/429 (33%), Positives = 223/429 (51%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW     +  A  E +A  +  L  +++ +K    P +   ++         +  T  Q 
Sbjct: 569 EWQKTKSKVSAKIEDIADDLIELYAQREAEKGYAFPKD--DQLQADFENQFAYPETDDQL 626

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I  DM +   M R+L GDVG GKT VAL A   AV AG Q   + P  ILAQQHY
Sbjct: 627 RSTAEIKHDMEKVRPMDRLLVGDVGFGKTEVALRAAFKAVAAGKQVAFLVPTTILAQQHY 686

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +     +  + + +++    +      L+ +  GQ  I+IGTH L    + +  L L+
Sbjct: 687 ENMLARFADFPVELGLLSRFKTRKEVTATLKGLEKGQVDIVIGTHRLLSKDVVFKDLGLL 746

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 747 IVDEEQRFGVKHKERLKQLKAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPI 806

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++  N   + E IER    L    + +++  ++     S+    V+   +L    T 
Sbjct: 807 QTYVMEQNAGAMREAIER---ELERNGQVFYLHNRV-----SDIEQTVDEIQALVPEATV 858

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             A  HG+M++   E V+  F  G   +L+ TT+IE G+D+ + + +I+E+A+H+GL+QL
Sbjct: 859 GYA--HGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNVNTMIVEDADHYGLSQL 916

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    +Y P   L++ S  RL  +K+ TE   GF IA  DL  R  G
Sbjct: 917 YQLRGRIGRSSRVAYGYFMYKPDKVLTEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAG 976

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 977 NLLGKQQHG 985


>gi|300312329|ref|YP_003776421.1| transcription-repair ATP-dependent coupling factor [Herbaspirillum
           seropedicae SmR1]
 gi|300075114|gb|ADJ64513.1| transcription-repair ATP-dependent coupling factor (helicase
           superfamily II) protein [Herbaspirillum seropedicae
           SmR1]
          Length = 1145

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 201/375 (53%), Gaps = 13/375 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q +AI  +++DM+    M R++ GDVG GKT VAL A   AV  G Q  I+AP 
Sbjct: 601 FEETADQAAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPT 660

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH         N  + +  ++         +A++ +  G   I+IGTH L  D +
Sbjct: 661 TLLAEQHAATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEV 720

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I  
Sbjct: 721 KFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIAT 780

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R  IKT  +   +   + E     L  G + Y++  ++E    +N ++ +E+   L
Sbjct: 781 APQKRLAIKT-FVRAEQESTIREACLRELKRGGQVYFLHNEVETI--ANRKAALEQL--L 835

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            E   + I + HG+M + D E VM  F      +L+ TT+IE GIDV  A+ II+  A+ 
Sbjct: 836 PE---ARIGVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADK 892

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
           FGLAQLHQLRGRVGR    +   LL      LSK +  RL  ++  E+   GF +A  DL
Sbjct: 893 FGLAQLHQLRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDL 952

Query: 626 KQRKEGEILGIKQSG 640
           + R  GE+LG  QSG
Sbjct: 953 EIRGAGEVLGDHQSG 967


>gi|254486916|ref|ZP_05100121.1| transcription-repair coupling factor [Roseobacter sp. GAI101]
 gi|214043785|gb|EEB84423.1| transcription-repair coupling factor [Roseobacter sp. GAI101]
          Length = 1174

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 140/413 (33%), Positives = 228/413 (55%), Gaps = 24/413 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P++ T  Q SAI D++ D++  N M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 614  PYTETDDQMSAINDVIDDLTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVIAP 673

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QHY+   +  +   + V  ++  +         E +A G   ++IGTHAL   +
Sbjct: 674  TTLLARQHYKSFAERFRGFPLEVRQLSRFVSTKDASATREGMAKGTVDVVIGTHALLAKN 733

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I++  L L+I+DE+  FGV  + +L    T  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 734  IKFNNLGLLIIDEEQHFGVGHKERLKAMRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 793

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  E      +E 
Sbjct: 794  TPPVDRLAIRTY---VSEFDTVTLR-EALLREHYRGGQSFYVVPRISDLAE------IEA 843

Query: 507  F-NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            F  +     T  +A  HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +I+
Sbjct: 844  FLKAQLPELTYLVA--HGQMAAGELDDRMNAFYDGKYDILLATTIVESGLDIPTANTMIV 901

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
              A+ FGLAQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +
Sbjct: 902  HRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRAKLTATAEKRLRVLGSLDTLGAGFTL 961

Query: 621  AEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQD 670
            A +DL  R  G +LG +QSG  +   F + Q  L D++ +I   + + ++  D
Sbjct: 962  ASQDLDIRGAGNLLGEEQSGQMRDVGFELYQSMLEDAIAKIRAGELEGVIDDD 1014


>gi|313888106|ref|ZP_07821780.1| transcription-repair coupling factor [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845796|gb|EFR33183.1| transcription-repair coupling factor [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 1159

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 144/433 (33%), Positives = 227/433 (52%), Gaps = 17/433 (3%)

Query: 214 KAKDFEWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
           K    +W    AR R + D++    I L   R+  K   G   + + +  ++      + 
Sbjct: 559 KLNSLDWKKKKARARQSIDDMAEDLIKLYATRENTK---GFAFSEDSQYQREFEDAFIYE 615

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q  + ++I +DM + + M R+L  DVG GKT VAL A   A+  G Q  I+ P  I
Sbjct: 616 ETPGQLKSAEEIKEDMEKASPMDRLLCADVGYGKTEVALRAAFKAILDGKQVAILVPTTI 675

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LAQQHY  IK+  +N  + V +++    +  ++  LE +  G   II+GTH L    +++
Sbjct: 676 LAQQHYNTIKERFKNFPVGVGLLSRFRSKKDQKMDLEGLKDGNIDIIVGTHRLLSKDVKF 735

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             L L+I+DE+ RFGV+ + KL         L +TATPIPRTL ++ +G  D+S I E P
Sbjct: 736 KDLGLLIIDEEQRFGVRHKEKLRMLKENVDTLTLTATPIPRTLQMSMIGIRDMSVIEEPP 795

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             R P++T ++  N +  V E +   +  G + Y++  ++     SN  + +     L  
Sbjct: 796 EERFPVETYVLEYNNL-MVREAILKEIERGGQVYFLYNKV-----SNMENKLLELRKLVP 849

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
             T S+A  +G+M++   E  M  F  G   +L+ +T+IE G+DV +A+ +II ++   G
Sbjct: 850 EATFSMA--NGQMTEKALEDTMIDFIEGNVDVLVCSTIIETGMDVPNANTMIITDSNRLG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQ 627
           L+QL+QLRGR+GR   I+     Y     +S+ +  RL  +K  TE   G  IAE DL+ 
Sbjct: 908 LSQLYQLRGRIGRSSRIAYAYFTYDRSTSISEVAQKRLQAIKEFTEFGSGHKIAERDLEI 967

Query: 628 RKEGEILGIKQSG 640
           R  G ILG +QSG
Sbjct: 968 RGSGSILGSRQSG 980


>gi|71275507|ref|ZP_00651793.1| Transcription-repair coupling factor [Xylella fastidiosa Dixon]
 gi|71900755|ref|ZP_00682876.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
 gi|170729284|ref|YP_001774717.1| transcription-repair coupling factor [Xylella fastidiosa M12]
 gi|71163807|gb|EAO13523.1| Transcription-repair coupling factor [Xylella fastidiosa Dixon]
 gi|71729485|gb|EAO31595.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
 gi|167964077|gb|ACA11087.1| transcription-repair coupling factor [Xylella fastidiosa M12]
          Length = 1193

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 229/431 (53%), Gaps = 23/431 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W+   R+       +A ++  +  R+Q +   G+ + ++  + +      PF  T  Q 
Sbjct: 597  QWSKAKRKAAEKVRDVAAELLEIQARRQARA--GLALRIDRTMYEPFAAGFPFEETPDQL 654

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+  L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++ P  +LA+QHY
Sbjct: 655  AAIETTLRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHY 714

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +    +  I VE+++        +  L++++ G   +I+GTH L Q  +++  L LV
Sbjct: 715  RNFRDRFADYPIRVEVLSRFKSTKEIKAELQKVSEGTMDVIVGTHRLLQPDVKFKDLGLV 774

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S I   P  R  +
Sbjct: 775  IVDEEQRFGVRQKEALKSLRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAV 834

Query: 459  KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHF 514
            +T I P +   + E  +R    L+ G + Y++   +E   + + +   +V          
Sbjct: 835  QTFITPWDNALLHEAFQR---ELARGGQLYFLHNDVESIGRMQRDLAQLVPE-------- 883

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ III  A+ FGLA
Sbjct: 884  -ARIGIAHGQMPERELERVMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLA 942

Query: 575  QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
            QLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF +A  DL+ R 
Sbjct: 943  QLHQLRGRVGRSHHRAYAYLVVPDRRSMTADAEKRLEAIASMDELGAGFTLATHDLEIRG 1002

Query: 630  EGEILGIKQSG 640
             GE+LG  QSG
Sbjct: 1003 AGELLGEDQSG 1013


>gi|256822363|ref|YP_003146326.1| transcription-repair coupling factor [Kangiella koreensis DSM
           16069]
 gi|256795902|gb|ACV26558.1| transcription-repair coupling factor [Kangiella koreensis DSM
           16069]
          Length = 1140

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 140/414 (33%), Positives = 226/414 (54%), Gaps = 19/414 (4%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A ++  +  R+  K+  GI   ++    ++      F  T  Q ++I  +++DM+    
Sbjct: 561 VAAELLDIYARRAAKE--GIQYQLDETEYRRFCAEFAFEETVDQTTSINAVIRDMTSHLP 618

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VAL A   A ++G Q  ++ P  +LAQQH+E       +  + V 
Sbjct: 619 MDRLVCGDVGFGKTEVALRAAFIAAQSGKQVAVLVPTTLLAQQHFETFSDRFADWPMKVA 678

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            ++        +  L+ +  G   I++GTH L Q  +++ +L L+I+DE+HRFGV+Q+ +
Sbjct: 679 SLSRFATSKEVQATLKGLEDGTVDIVVGTHKLIQQDVKFKRLGLLIIDEEHRFGVRQKEQ 738

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEV 471
           L +  T   +L +TATPIPRTL ++  G  D+S I   PA R  +KT +   ++  I E 
Sbjct: 739 LKKFRTEVDILTLTATPIPRTLNMSMSGMRDLSIIATPPARRLSVKTFVREYHKPLIREA 798

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
           I  L+ VL  G + Y++   ++       +  VE    L     + I + HG+M + + E
Sbjct: 799 I--LREVL-RGGQVYFLHNAVD-----TIQRTVEELQELLPE--ARIQLAHGQMRERELE 848

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            VM  F +    +L+ TT++E GID  +A+ +II+ A+ FGLAQLHQLRGRVGR    + 
Sbjct: 849 QVMRDFYHQRFNVLVCTTIVETGIDNPNANTMIIDRADKFGLAQLHQLRGRVGRSHHQAY 908

Query: 592 CILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             LL      ++K++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG
Sbjct: 909 AYLLTPAGRKITKDAEKRLDAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSG 962


>gi|163731753|ref|ZP_02139200.1| transcription-repair coupling factor [Roseobacter litoralis Och
           149]
 gi|161395207|gb|EDQ19529.1| transcription-repair coupling factor [Roseobacter litoralis Och
           149]
          Length = 1154

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 141/403 (34%), Positives = 225/403 (55%), Gaps = 31/403 (7%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q  AI+D++ DM+  N M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 594 PYTETDDQLRAIEDVIDDMTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVALIAP 653

Query: 330 IGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
             +LA+QHY    E  + +  N + +   ++     A R    + ++ G   I+IGTHAL
Sbjct: 654 TTLLARQHYKSFAERFRGFPINVRQLSRFVSTKDANATR----DGMSRGTVDIVIGTHAL 709

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               I++  L L+++DE+  FGV  + +L Q  T  HVL +TATPIPRTL L+  G  D+
Sbjct: 710 LAQGIRFQNLGLLVIDEEQHFGVTHKERLKQLRTDIHVLTLTATPIPRTLQLSLTGVRDL 769

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRS 502
           S I   P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  E     
Sbjct: 770 SIIGTPPVDRLAIRTY---VSEFDTVTLR-EALLREHYRGGQSFYVVPRISDLPE----- 820

Query: 503 VVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            +E F  L E     +  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+
Sbjct: 821 -IEAF--LTEQLPELTYVVAHGQMAAGELDDRMNAFYDGKFDILLATTIVESGLDIPTAN 877

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED--- 616
            +++  A+ FGLAQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    
Sbjct: 878 TMVVHRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRARLTATAEKRLRVLSSLDTLGA 937

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           GF +A +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 938 GFTLASQDLDIRGAGNLLGEEQSGQMRDV--GFELYQSMLEEA 978


>gi|254502678|ref|ZP_05114829.1| transcription-repair coupling factor [Labrenzia alexandrii DFL-11]
 gi|222438749|gb|EEE45428.1| transcription-repair coupling factor [Labrenzia alexandrii DFL-11]
          Length = 1161

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/382 (34%), Positives = 213/382 (55%), Gaps = 25/382 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AI  + +D+S    M R++ GDVG GKT VAL A   A  +G Q  ++ P
Sbjct: 613 PYEETDDQLNAIDSVFEDLSSGRPMDRLVCGDVGFGKTEVALRAAFLAAMSGRQVAVVVP 672

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH++   +      I V   +  +P     +  + IA G   I++GTHAL   S
Sbjct: 673 TTLLARQHFKTFSERFHGLPINVAHASRLVPTRQLTQTKKGIADGSVDIVVGTHALLGKS 732

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           IQ+  L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S I 
Sbjct: 733 IQFRDLGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRTLQLALTGVRELSLIA 792

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  ++T + P    D ++ R + +L E   G +++++CP++ +        + ER
Sbjct: 793 TPPVDRLAVRTFVSP---FDPLVVR-EALLREHYRGGQSFYVCPRLSD--------IAER 840

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            + L E      +A+ HG+M   + E VM++F  G   +L++TT++E G+D+  A+ +I+
Sbjct: 841 RDFLEEAVPELKVAVAHGQMPPGELEDVMNAFYEGKYNVLLSTTIVESGLDIPTANTLIV 900

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GF 618
             A+ FGL+QL+QLRGRVGR +  +    L+  P    L+  +  RL VL++ E    GF
Sbjct: 901 HRADMFGLSQLYQLRGRVGRSK--TRAYALFTVPANKTLTPTAERRLKVLQSLETLGAGF 958

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL  R  G +LG +QSG
Sbjct: 959 QLASHDLDIRGAGNLLGDEQSG 980


>gi|309790907|ref|ZP_07685449.1| transcription-repair coupling factor [Oscillochloris trichoides
           DG6]
 gi|308227021|gb|EFO80707.1| transcription-repair coupling factor [Oscillochloris trichoides
           DG6]
          Length = 1171

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 228/431 (52%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R+  A  + LA  +  L  ++Q K+  G   N + +  +++  + P+  T+ Q 
Sbjct: 561 DWERAKRKARAAVQDLAQDLLALYAQRQTKR--GHAFNPDNEWQRELEGSFPYIETEDQL 618

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + ++  DM     M R++ GDVG GKT VAL A   AV+ G Q  ++ P  +LAQQH+
Sbjct: 619 RVLAEVKTDMEHDVPMDRLICGDVGFGKTEVALRAAFKAVQDGKQVALLVPTTVLAQQHF 678

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E  K+      + VE+++       +   +  +  G+  IIIGTH L    + +  L LV
Sbjct: 679 ETFKQRMAAFPVKVEMLSRFRSAKEQDVIMRELLLGRVDIIIGTHRLLSKDVIFKDLGLV 738

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L Q      VL +TATPIPRTL +   G  D+S I   P  R P+
Sbjct: 739 IVDEEQRFGVRHKERLKQLRAEVDVLTLTATPIPRTLHMAMAGIRDLSVIDTPPEDRIPV 798

Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHF 514
           KT + P    DE + R  ++  L    + Y++  +++      ++ R++V   N      
Sbjct: 799 KTYVTP---YDETLIREAILRELERNGQVYFVHNRVQSIYHVANHLRNLVPEAN------ 849

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              I + HG++++ + E VM  F  G   +L+ TT+IE G+DV  A+ +II++A +FGLA
Sbjct: 850 ---IGVGHGQLNERELEQVMIDFFEGRHDVLVCTTIIESGLDVSSANTMIIDDATNFGLA 906

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QL+QLRGRVGR    +   L Y     +++ +  RL  ++   +   GF +A  DL+ R 
Sbjct: 907 QLYQLRGRVGRSANRAYAYLFYKGDRAMTEEAQQRLEAIQEATELGAGFRVAMRDLEIRG 966

Query: 630 EGEILGIKQSG 640
            G +LG +QSG
Sbjct: 967 AGNLLGAEQSG 977


>gi|293373528|ref|ZP_06619880.1| transcription-repair coupling factor [Bacteroides ovatus SD CMC 3f]
 gi|292631492|gb|EFF50118.1| transcription-repair coupling factor [Bacteroides ovatus SD CMC 3f]
          Length = 1119

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/409 (33%), Positives = 217/409 (53%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 521 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 580

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  ++  +     VE ++   
Sbjct: 581 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 640

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G   I+IGTH +    +Q+  L L+IVDE+ +FGV  + KL Q   
Sbjct: 641 TAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 700

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   N  +EVI + +   
Sbjct: 701 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 758

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + +++  +I    E   ++++ER      H     +AI HG+M   + E ++  F
Sbjct: 759 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTELEKIILDF 810

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 811 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAP 870

Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           P   L+     RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 871 PLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 919


>gi|225378012|ref|ZP_03755233.1| hypothetical protein ROSEINA2194_03672 [Roseburia inulinivorans DSM
           16841]
 gi|225210165|gb|EEG92519.1| hypothetical protein ROSEINA2194_03672 [Roseburia inulinivorans DSM
           16841]
          Length = 504

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 150/461 (32%), Positives = 227/461 (49%), Gaps = 28/461 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + +   +G+G K +    KI    N    R  DL+ Y P +++         E+ E  
Sbjct: 3   LNSSIKEVKGIGDKTAGLFLKI----NIETIR--DLISYFPRTYVQFPEIKHPDEVVEGE 56

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTG---EITLLFFYRKTEMLKNVFFEGRKITV 125
              + G I Q     +++ R  +I +   TG    + L++F  +   +KN    G     
Sbjct: 57  TAAVIGQIRQTPV--VKRVRSMQITVTSITGMGKRLELVWF--RLPYIKNSLHPGGTYVF 112

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            GK++    R +M  P        +    L+  VY+LP GLS  L  K     L    + 
Sbjct: 113 YGKVQHKNGRFVMEQPAIYTPEKYEAMEHLLLPVYTLPKGLSNQLMLKAERSVLEEEHLF 172

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            +++  +L +K        A   IH P    D E    AR+RL +DEL      L ++  
Sbjct: 173 RDYLPTELREKHQLCEYNYAIKQIHFP---DDMETLIEARKRLVFDELF-----LFILNL 224

Query: 246 QFKKEIGIPINVE-----GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           Q++KE       +         ++++  +P+  T +Q  A+ ++  DM     M R++QG
Sbjct: 225 QYQKEKKEKEKNQFSFQSDDFVEQLIEKLPYKLTNAQLRALSEVRADMRSDYVMQRLIQG 284

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGN 358
           DVGSGKT++A +AMA     G Q+ IMAP  +LA+QHYE  +   +       V +ITG+
Sbjct: 285 DVGSGKTIIAFLAMADTAHNGCQSAIMAPTEVLARQHYESFQSMCEIFGLDFPVILITGS 344

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           M    ++ A + I      +IIGTHAL Q+ + Y  L LVI DEQHRFGV+QR   ++K 
Sbjct: 345 MTAKQKKLAYQEILDHPDALIIGTHALIQEKVIYQNLALVITDEQHRFGVKQREIFSEKG 404

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           T PH+L+M+ATPIPRTL +   GD+DIS + E PA R PIK
Sbjct: 405 TKPHILVMSATPIPRTLAIILYGDLDISVVDEVPAKRLPIK 445


>gi|254440320|ref|ZP_05053814.1| transcription-repair coupling factor [Octadecabacter antarcticus 307]
 gi|198255766|gb|EDY80080.1| transcription-repair coupling factor [Octadecabacter antarcticus 307]
          Length = 1177

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 142/403 (35%), Positives = 224/403 (55%), Gaps = 21/403 (5%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            ++ L   P++ T  Q SAI+D+L D+     M R++ GDVG GKT VA+ A   A  +G 
Sbjct: 616  EQFLARFPYAETDDQLSAIEDVLDDLGSGKPMDRLVCGDVGFGKTEVAIRAAFVAAMSGV 675

Query: 323  QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            Q  I+AP  +LA+QHY+   +  +   I V  ++  +         + +A G   I+IGT
Sbjct: 676  QVAIVAPTTLLARQHYKGFAERFRGFPINVRTLSRFVSAKEAALTKDGMAKGTVDIVIGT 735

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            HAL   SI++  L L+++DE+  FGVQ + +L Q  T  HVL +TATPIPRTL L+  G 
Sbjct: 736  HALLAKSIRFKDLGLLVIDEEQHFGVQHKERLKQMRTDIHVLTLTATPIPRTLQLSLSGV 795

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
             ++S I   P  R  I+T    ++  D V  R + +L E   G +++++ P++ +  E  
Sbjct: 796  RELSIIGTPPVDRLAIRTY---VSEFDTVTIR-EALLREHYRGGQSFFVVPRVSDLSE-- 849

Query: 500  FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                +E F    E    S     G+M+  + +  M++F +G   +L+ATT++E G+D+  
Sbjct: 850  ----IEAFIR-DEIPEVSFVTASGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPT 904

Query: 560  ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED- 616
            A+ +I+  A+ FGLAQL+Q+RGRVGR +  +   L Y P   L+  +  RL VL + +  
Sbjct: 905  ANTMIVHRADMFGLAQLYQIRGRVGRSKARAYAYLTYKPRQKLTPQAEKRLRVLGSIDTL 964

Query: 617  --GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
              GF +A +DL  R  G +LG +QSG  + +    EL+ S+LE
Sbjct: 965  GAGFTLASQDLDIRGAGNLLGEEQSGQMREV--GYELYQSMLE 1005


>gi|298291681|ref|YP_003693620.1| transcription-repair coupling factor [Starkeya novella DSM 506]
 gi|296928192|gb|ADH89001.1| transcription-repair coupling factor [Starkeya novella DSM 506]
          Length = 1170

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 142/410 (34%), Positives = 225/410 (54%), Gaps = 27/410 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q++AI+ +  D+   + M R++ GDVG GKT VAL A  A    G Q  ++ P
Sbjct: 617  PYEETEDQDAAIESVFDDLGSGHPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVP 676

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QH++   +  +   ++V   +  +      +  + +A G   I++GTHAL   +
Sbjct: 677  TTLLARQHFKTFSERFKGLPVVVRQASRLVSSKDMSETRKGLADGTVDIVVGTHALLGKT 736

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I +  L LVIVDE+  FGV  + KL Q     HVL +TATPIPRTL L   G  ++S I 
Sbjct: 737  ISFKDLGLVIVDEEQHFGVAHKEKLKQLRADVHVLTLTATPIPRTLQLAMTGVRELSIIA 796

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKE-SNF--RSV 503
              P  R  +++ + P    D +I R + +L E   G +++++CP+IE+  E  +F  R V
Sbjct: 797  SPPVDRLAVRSFVTP---FDPLIVR-EALLRERYRGGQSFYVCPRIEDLAEVKDFLDRQV 852

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
             E            +A+ HG+M+    E +M +F +G   +L++TT++E G+D+  A+ +
Sbjct: 853  PE----------VKVAVAHGQMAATQLEEIMSAFYDGQFDVLLSTTIVESGLDIPTANTL 902

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCI--LLYHPPLSKNSYTRLSVLKNTED---GF 618
            II  A+ FGLAQL+QLRGRVGR +  +  I  L     ++  +  RL VL++ +    GF
Sbjct: 903  IIHRADMFGLAQLYQLRGRVGRSKTRAYAIFTLPAEKQVTAQAERRLKVLQSLDTLGAGF 962

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
             +A  DL  R  G +LG +QSG  K +    EL+  +LE A  + K  +T
Sbjct: 963  QLASHDLDIRGAGNLLGDEQSGHIKEV--GYELYQEMLEEAIANLKAGIT 1010


>gi|210608664|ref|ZP_03287941.1| hypothetical protein CLONEX_00120 [Clostridium nexile DSM 1787]
 gi|210152921|gb|EEA83927.1| hypothetical protein CLONEX_00120 [Clostridium nexile DSM 1787]
          Length = 1112

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/403 (33%), Positives = 227/403 (56%), Gaps = 17/403 (4%)

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+   +DM     M R++ GDVG GKT +A+ A   AV+   Q V + P  ILAQQHY 
Sbjct: 572 AIEATKKDMESTKIMDRLICGDVGYGKTEIAIRAAFKAVQENKQVVYLVPTTILAQQHYN 631

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +   + V+++      A ++K +E    G   I++GTH +    +++  L L+I
Sbjct: 632 TFVQRMKEFPVRVDLMCRFRTPAQQKKTIEDTKRGLVDIVVGTHRVLSKDLEFKDLGLLI 691

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGVQ + ++ +      VL +TATPIPRTL ++ +G  D+S + E P  R PI+
Sbjct: 692 IDEEQRFGVQHKEQIKKLKENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPVDRMPIQ 751

Query: 460 TVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           T ++  N  DE++ E ++  LS   + Y++  ++++  E     + ++   L     +++
Sbjct: 752 TYVMEYN--DEMVREAIQRELSRQGQVYYVYNKVKDIDE-----ITDKVQKLVPE--ANV 802

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HG+M + + E++M  F NG   +L++TT+IE G+D+ +A+ +II +A+  GL+Q++Q
Sbjct: 803 AFAHGQMKERELENIMLDFINGEIDVLVSTTIIETGLDISNANTMIIHDADQLGLSQMYQ 862

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGR   ++   LLY     L + +  RLS ++   D   GF IA  DL+ R  G +
Sbjct: 863 LRGRVGRSNRMAYAFLLYKRDKLLREVAEKRLSAIREFTDLGSGFKIAMRDLEIRGAGNL 922

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           LG +Q G  + +    +L+  +L  A K  K  + ++P  T+V
Sbjct: 923 LGAEQHGHMEAV--GYDLYCKMLNEAVKQLKGEIEEEPYTTTV 963


>gi|194289485|ref|YP_002005392.1| transcription-repair ATP-dependent coupling factor, helicase
           [Cupriavidus taiwanensis LMG 19424]
 gi|193223320|emb|CAQ69325.1| transcription-repair ATP-dependent coupling factor, helicase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 1149

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 147/431 (34%), Positives = 224/431 (51%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R         A ++  L  R+  ++    P++   K  +    +  F  T  Q 
Sbjct: 556 QWDKAKRRAAQQIRDTAAELLNLYARRAAREGFAFPLSP--KDYETFAESFGFEETPDQA 613

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QH+
Sbjct: 614 AAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVAMLAPTTLLAEQHF 673

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +        + +  ++    +     A+++I  G   I+IGTH +  D +++ +L LV
Sbjct: 674 QTLSDRFAEWPVRIVELSRFKTKKEIDAAIKQINEGSVDIVIGTHKILSDQVKFQRLGLV 733

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 734 IIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 793

Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           KT    + R ++ + R  ++  L  G + Y++  ++E  E K +    +V          
Sbjct: 794 KTF---VRREEDGVIREAILRELKRGGQVYFLHNEVETIENKRARLAELVPE-------- 842

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + IA+ HG+M + + E VM  F +    +L+ TT+IE GIDV  A+ I+I  A+ FGLA
Sbjct: 843 -ARIAVAHGQMHERELERVMRDFVSRRDNILLCTTIIETGIDVPTANTILIHRADKFGLA 901

Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QLHQLRGRVGR    +   LL H    L+K +  RL  ++  E+   GF +A  DL+ R 
Sbjct: 902 QLHQLRGRVGRSHHQAYAYLLVHDVDGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRG 961

Query: 630 EGEILGIKQSG 640
            GE+LG KQSG
Sbjct: 962 AGEVLGDKQSG 972


>gi|261403915|ref|YP_003240156.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10]
 gi|261280378|gb|ACX62349.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10]
          Length = 1175

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/378 (34%), Positives = 211/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI +I +DM Q   M R+L GDVG GKT VA+ A   A   G Q  ++ P
Sbjct: 610 PYDETPDQLRAITEIKKDMEQNRPMDRLLCGDVGYGKTEVAVRAAFKAAIEGKQVAVLVP 669

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE  ++   N  I +++++    +  + + ++++  G   I+IGTH L    
Sbjct: 670 TTILAQQHYETFRERFANYPINIQVLSRFRSRKEQNETIKKVKQGSVDILIGTHRLLSQD 729

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I +  L L+IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730 IVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNIDVLTLTATPIPRTLHMSMLGVRDLSVIE 789

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T ++  ++  + E IER    L+ G + Y++  +++       + +  + 
Sbjct: 790 TPPENRFPVQTYVVEHSQTLVREAIER---ELARGGQVYYLYNRVQ-----GIQEMAAQI 841

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           + L     + + + HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +
Sbjct: 842 SMLVPE--ARVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHD 899

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+QLRGRVGR   I+     Y     L++ +  RL  +K  TE   GF IA 
Sbjct: 900 ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAM 959

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G +LG +Q G
Sbjct: 960 RDLSIRGAGNLLGAEQHG 977


>gi|73663562|ref|YP_302343.1| transcription-repair coupling factor [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|123761497|sp|Q49V12|MFD_STAS1 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|72496077|dbj|BAE19398.1| transcription-repair coupling factor [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 1170

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 146/382 (38%), Positives = 213/382 (55%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q  +I++I QDM  +  M R+L GDVG GKT VA+ A   AV  G Q   +
Sbjct: 616 DFPYELTPDQSKSIEEIKQDMEIERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFL 675

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHYE + +  Q+  I V++I+        ++  E +  G   I++GTH L  
Sbjct: 676 VPTTILAQQHYETLIERMQDFPIEVQLISRFRTTKEVKETKEGLKSGFVDIVVGTHKLLG 735

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             IQY  L L+IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S 
Sbjct: 736 KDIQYKDLGLLIVDEEQRFGVRHKERIKSLKNNVDVLTLTATPIPRTLHMSMLGVRDLSV 795

Query: 448 ITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R P++T ++    N I E +ER    LS   + +++  +++        S+ E
Sbjct: 796 IETPPENRFPVQTYVLEQNTNFIKEALER---ELSRDGQVFYLYNKVQ--------SIYE 844

Query: 506 RFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   L      ++I + HG+M++ D E  M SF N    +++ TT+IE G+DV +A+ +I
Sbjct: 845 KREQLQMLMPDANIGVAHGQMNERDLEETMLSFINHEYDIIVTTTIIETGVDVPNANTLI 904

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKN-TE--DGF 618
           IE+A+ FGL+QL+QLRGRVGR   I     L HP    LS+ +  RL  +K  TE   GF
Sbjct: 905 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFL-HPTNKVLSETAEDRLQAIKEFTELGSGF 963

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G +LG +Q G
Sbjct: 964 KIAMRDLNIRGAGNLLGKQQHG 985


>gi|28197977|ref|NP_778291.1| transcription-repair coupling factor [Xylella fastidiosa Temecula1]
 gi|182680603|ref|YP_001828763.1| transcription-repair coupling factor [Xylella fastidiosa M23]
 gi|28056037|gb|AAO27940.1| transcription-repair coupling factor [Xylella fastidiosa Temecula1]
 gi|182630713|gb|ACB91489.1| transcription-repair coupling factor [Xylella fastidiosa M23]
          Length = 1195

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 229/431 (53%), Gaps = 23/431 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W+   R+       +A ++  +  R+Q +   G+ + ++  + +      PF  T  Q 
Sbjct: 599  QWSKAKRKAAEKVRDVAAELLEIQARRQARA--GLALRIDRTMYEPFAAGFPFEETPDQL 656

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+  L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++ P  +LA+QHY
Sbjct: 657  AAIETTLRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHY 716

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +    +  I VE+++        +  L++++ G   +I+GTH L Q  +++  L LV
Sbjct: 717  RNFRDRFADYPIRVEVLSRFKSTKEIKAELQKVSEGTMDVIVGTHRLLQPDVKFKDLGLV 776

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S I   P  R  +
Sbjct: 777  IVDEEQRFGVRQKEALKSLRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAV 836

Query: 459  KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHF 514
            +T I P +   + E  +R    L+ G + Y++   +E   + + +   +V          
Sbjct: 837  QTFITPWDNALLHEAFQR---ELARGGQLYFLHNDVESIGRMQRDLAQLVPE-------- 885

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ III  A+ FGLA
Sbjct: 886  -ARIGIAHGQMPERELERVMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLA 944

Query: 575  QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
            QLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF +A  DL+ R 
Sbjct: 945  QLHQLRGRVGRSHHRAYAYLVVPDRRSMTADAEKRLEAIASMDELGAGFTLATHDLEIRG 1004

Query: 630  EGEILGIKQSG 640
             GE+LG  QSG
Sbjct: 1005 AGELLGEDQSG 1015


>gi|296118194|ref|ZP_06836775.1| transcription-repair coupling factor [Corynebacterium ammoniagenes
            DSM 20306]
 gi|295968752|gb|EFG81996.1| transcription-repair coupling factor [Corynebacterium ammoniagenes
            DSM 20306]
          Length = 1223

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 151/523 (28%), Positives = 263/523 (50%), Gaps = 29/523 (5%)

Query: 131  KLKNRI---IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE-ALSRL--PV 184
            K +NR+    +    ++ H +  +   L  A  ++ TG      + I++E A S+   P 
Sbjct: 497  KRRNRVDPLALKQGDFVVHETHGIGKFLKMAERTIQTGEESSRREYIVLEYAPSKRGQPA 556

Query: 185  LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
               W+  D L   S  +  E+ ++     K    +W +  ++  A    +AG++  L  +
Sbjct: 557  DQLWVPMDSLDMLSKYTGGESPHL----SKMGGSDWKNTKKKARAAVREIAGELVELYAK 612

Query: 245  KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            +Q       P +   ++  ++  N P+  T+ Q  AI  + +DM  +  M R++ GDVG 
Sbjct: 613  RQAAPGHQFPPDTPWQM--EMEDNFPYVETEDQMMAIDAVKEDMESQVPMDRVIVGDVGY 670

Query: 305  GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
            GKT VA+ A   AV+ G Q  ++ P  +LAQQHY+   +      + + +++        
Sbjct: 671  GKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHYDTFVERMGGFPLEIRVLSRFTSTKES 730

Query: 365  RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
            ++ ++++A G+  ++IGTH L Q  + +  L L+IVDE+ RFGV+ +  +     +  VL
Sbjct: 731  KEIIKQLATGEIDVVIGTHRLLQTGVHWKSLGLIIVDEEQRFGVEHKEHIKALKASVDVL 790

Query: 425  LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             M+ATPIPRTL ++  G  ++S I   P  R P+ T +       +V   ++  L    +
Sbjct: 791  TMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYED-KQVAAAIRRELLRDGQ 849

Query: 485  AYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             ++I  ++   EKK    R +V           + + + HG+M++   E  +  F +   
Sbjct: 850  TFFIHNKVADIEKKAREIRDLVPE---------ARVVVAHGQMNEELLEKTVQGFWDREY 900

Query: 543  KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPL 600
             +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQLRGRVGR  E      LY     L
Sbjct: 901  DVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATL 960

Query: 601  SKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            ++ SY RL+ +    D   G  +A +DL+ R  G +LG +QSG
Sbjct: 961  TETSYDRLATIAQNNDLGAGMDVAMKDLEMRGAGNVLGAQQSG 1003


>gi|169830290|ref|YP_001716272.1| transcription-repair coupling factor [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637134|gb|ACA58640.1| transcription-repair coupling factor [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 1176

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 209/379 (55%), Gaps = 17/379 (4%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T  Q  AI  + +DM +   M R+L GDVG GKT VA+ A+  AV  G QA ++ 
Sbjct: 621 FPFEETPDQLKAIMQVKKDMERPRPMDRLLCGDVGYGKTEVAMRAVFKAVTDGKQAAVLV 680

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQH +  ++      +++E+++       +++ L  +A G+  I+IGTH L QD
Sbjct: 681 PTTVLAQQHLQTFRERFNGYPVVIEMLSRFRSVREQKQVLADLAAGKVDIVIGTHRLVQD 740

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +Q+  L L++VDE+ RFGV  + KL  +     V+ +TATPIPRTL ++ +G  D S +
Sbjct: 741 DVQFADLGLIVVDEEQRFGVLHKEKLKLRHPNVDVITLTATPIPRTLYMSLVGIRDTSLL 800

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R P++T ++  + +  + E +   L+ G + Y++  ++ E         ++R  
Sbjct: 801 ETPPLDRFPVQTFVVEEDPV-LIREAVGRELARGGQVYFVHNRVFE---------LDRVA 850

Query: 509 SLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              +     + IA+ HG+M +   E VM  F  G   +L+ TT+IE G+D+ + + ++++
Sbjct: 851 GWLQELVPEARIAVAHGQMREDQLEQVMLDFVAGAYDVLVCTTIIETGLDITNVNTLVVK 910

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621
            A+  GLAQL+QLRGRVGR   ++     +     L + +  RL  +++  D   GF +A
Sbjct: 911 EADQLGLAQLYQLRGRVGRSNRLAYAYFTFRRDRLLGEAAEKRLRAIRDFTDFGSGFRLA 970

Query: 622 EEDLKQRKEGEILGIKQSG 640
           + DL+ R  G +LG +Q G
Sbjct: 971 KRDLEIRGAGNLLGTEQHG 989


>gi|237722279|ref|ZP_04552760.1| transcription-repair coupling factor [Bacteroides sp. 2_2_4]
 gi|229448089|gb|EEO53880.1| transcription-repair coupling factor [Bacteroides sp. 2_2_4]
          Length = 1124

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/409 (33%), Positives = 217/409 (53%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 526 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 585

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  ++  +     VE ++   
Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 645

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G   I+IGTH +    +Q+  L L+IVDE+ +FGV  + KL Q   
Sbjct: 646 TAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 705

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   N  +EVI + +   
Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 763

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + +++  +I    E   ++++ER      H     +AI HG+M   + E ++  F
Sbjct: 764 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTELEKIILDF 815

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 816 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAP 875

Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           P   L+     RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 876 PLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 924


>gi|217076282|ref|YP_002333998.1| transcription-repair coupling factor [Thermosipho africanus TCF52B]
 gi|217036135|gb|ACJ74657.1| transcription-repair coupling factor [Thermosipho africanus TCF52B]
          Length = 909

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/404 (32%), Positives = 229/404 (56%), Gaps = 19/404 (4%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +RK  K   GI +  + ++ ++  +  P   T+ Q  AI+++ +D+S +  M R+L GD 
Sbjct: 364 LRKNTK---GISLPGDSELEKEFAKTFPHIETQDQLKAIQEVSEDLSSEKNMDRLLAGDA 420

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G GKT VA+ A   A  +G Q  ++ P  +LA+QHYE  KK  +   I VE+   ++ + 
Sbjct: 421 GYGKTEVAMRAAFKAAISGKQVAVLVPTTVLARQHYENFKKRFEPFGINVELYDSSLTKK 480

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            + +  ++I  G   ++IGTH L + SI++  L L+I+DE+ +FGVQQ+  L +     +
Sbjct: 481 QKDEVKQKIETGITDVVIGTHGLLK-SIKFSDLGLLIIDEEQKFGVQQKEALKKLRINVN 539

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LS 480
           +L M+ATPIPRTL +   G  D+S I   P GRK I+   + +N  DE I R  ++  ++
Sbjct: 540 ILSMSATPIPRTLHMALSGIKDMSVIKTPPFGRKNIQ---VYVNTYDEKIIRQAIMREIN 596

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G +  ++  ++     ++   V ++   +      SI I +G+M     E V++ F +G
Sbjct: 597 RGGQVLYVHNRV-----NDIEDVAKKLKEIVPEV--SIDIANGQMPKKRMEKVIEEFYHG 649

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT++IE G+D+ +A+ +I+++A  +GLAQL+QLRGRVGR ++ +     +   +
Sbjct: 650 KLDVLVATSIIENGVDIPNANTLIVDDAHRYGLAQLYQLRGRVGRSDKRAFAYFFHPSKI 709

Query: 601 SKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQSGM 641
           +K +  RL  +K       GF IA +D++ R  G ILG++Q G 
Sbjct: 710 NKVAKERLKAIKEIMGPGSGFQIALKDMEIRGIGNILGLEQHGF 753


>gi|332291666|ref|YP_004430275.1| transcription-repair coupling factor [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169752|gb|AEE19007.1| transcription-repair coupling factor [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 1137

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/410 (32%), Positives = 221/410 (53%), Gaps = 18/410 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q SA +D+ +DM  +  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P 
Sbjct: 558 YEDTPDQSSATEDVKRDMESERPMDRLVCGDVGFGKTEVAIRAAFKAVDGGKQVAVLVPT 617

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH    K+  ++  + ++ +        +R+ L  +  G   I+IGTH L   ++
Sbjct: 618 TILAYQHARTFKERLKDFPVKIDYLNRFRTAKEKREVLAGLESGAIDIVIGTHQLTSKNV 677

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+++DE+ +FGV  + KL   +     L +TATPIPRTL  + +   D+S I  
Sbjct: 678 NFKDLGLLVIDEEQKFGVAVKDKLKTISETVDTLTLTATPIPRTLQFSLMAARDLSTINT 737

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R PI++ ++  +  +EVI + ++  +  G + ++I  +IE  KE     +++R   
Sbjct: 738 APPNRYPIESNVVRFS--EEVIRDAVQYEIQRGGQVFFIHNRIENIKE--VAGLIQRLVP 793

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 + + I HG+M     E+ M SF NG   +L++TT+IE G+DV +A+ I I NA 
Sbjct: 794 -----DAKVGIGHGQMEGKTLEAKMLSFMNGEFDVLVSTTIIESGLDVPNANTIFINNAN 848

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEED 624
           +FGL+ LHQ+RGRVGR  + + C  +  P   ++ ++  R+  L+       GF IA +D
Sbjct: 849 NFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKRIQALEQFSVLGSGFNIAMKD 908

Query: 625 LKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDP 671
           L+ R  G++LG +QSG      F   Q  L++++ E+   +   +   DP
Sbjct: 909 LEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIDELKEDEFSELYNDDP 958


>gi|294643129|ref|ZP_06720961.1| transcription-repair coupling factor [Bacteroides ovatus SD CC 2a]
 gi|292641537|gb|EFF59723.1| transcription-repair coupling factor [Bacteroides ovatus SD CC 2a]
          Length = 1119

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/409 (33%), Positives = 217/409 (53%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 521 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 580

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  ++  +     VE ++   
Sbjct: 581 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 640

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G   I+IGTH +    +Q+  L L+IVDE+ +FGV  + KL Q   
Sbjct: 641 TAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 700

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   N  +EVI + +   
Sbjct: 701 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 758

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + +++  +I    E   ++++ER      H     +AI HG+M   + E ++  F
Sbjct: 759 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTELEKIILDF 810

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 811 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAP 870

Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           P   L+     RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 871 PLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 919


>gi|163760200|ref|ZP_02167283.1| transcription-repair coupling factor (TRCF) protein [Hoeflea
            phototrophica DFL-43]
 gi|162282599|gb|EDQ32887.1| transcription-repair coupling factor (TRCF) protein [Hoeflea
            phototrophica DFL-43]
          Length = 1168

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 144/419 (34%), Positives = 231/419 (55%), Gaps = 28/419 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q +AI+ +  D+++   M R++ GDVG GKT VAL A   A   G Q  ++ P
Sbjct: 622  PYDETEDQMAAIERVRGDLAEGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGVQVAVVVP 681

Query: 330  IGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALER--IAHGQAHIIIGTHALF 386
              +LA+QH+   K +T+  +   V I   +     +  AL +  +A G+  I++GTHAL 
Sbjct: 682  TTLLARQHF---KTFTERLRGYPVRIAQASRLVGAKELALTKAELASGKTDIVVGTHALL 738

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              SIQ+  L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S
Sbjct: 739  GSSIQFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELS 798

Query: 447  KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--SNFRSVV 504
             IT  P  R  ++T I P + +  V E L      G +++++CP++ +  E  +  RS V
Sbjct: 799  LITTAPVDRMAVRTFISPFDPV-TVRETLMREHYRGGQSFYVCPRVSDLDEVAAFLRSDV 857

Query: 505  ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                          AI HG+M   + + +M++F +G   +L++TT++E G+DV  A+ +I
Sbjct: 858  PELK---------FAIAHGQMGAGELDDIMNAFYDGQYDVLLSTTIVESGLDVPTANTLI 908

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTED---GF 618
            +  A+ FGLAQL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF
Sbjct: 909  VHRADMFGLAQLYQLRGRVGR-SKVRAFALFTLPVNKTLTATADKRLKVLQSLDTLGAGF 967

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
             +A  DL  R  G +LG +QSG  K   F + Q  L +++ E+  +DA       P +T
Sbjct: 968  QLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQHMLEEAVAEVRGEDAHVDTGWSPQIT 1026


>gi|296140872|ref|YP_003648115.1| transcription-repair coupling factor [Tsukamurella paurometabola DSM
            20162]
 gi|296029006|gb|ADG79776.1| transcription-repair coupling factor [Tsukamurella paurometabola DSM
            20162]
          Length = 1218

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 204/378 (53%), Gaps = 17/378 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF+ T  Q + I D+  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 641  PFTETVDQMTVIGDVKSDMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 700

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQH +      Q   + V+ ++    +    + LE +A G   I++GTH L Q  
Sbjct: 701  TTLLAQQHLKTFVDRMQGFPVTVKGLSRFTDRHETEQVLEGLADGSVDIVVGTHRLLQTG 760

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +++  L LV+VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I 
Sbjct: 761  VRWKDLGLVVVDEEQRFGVEHKEHIKALRTNVDVLTMSATPIPRTLEMSMAGIREMSTIL 820

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
              P  R P+ T + P +   +V   ++  L    + +++  ++   +K     R +V   
Sbjct: 821  TPPEERHPVLTYVGPYDN-KQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKQIRDMVPE- 878

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                    + + + HG+M +   ES +  F N    +L+ TT++E G+D+ +A+ +I+E 
Sbjct: 879  --------ARVVVAHGQMGEEALESTVQGFWNREFDVLVCTTIVETGLDISNANTLIVER 930

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
            AE+ GL+QLHQLRGRVGR  E      LY    PL++ +Y RLS +    +   G  +A 
Sbjct: 931  AENLGLSQLHQLRGRVGRSRERGYAYFLYPSEKPLTETAYDRLSTIAQNNELGAGMAVAM 990

Query: 623  EDLKQRKEGEILGIKQSG 640
            +DL+ R  G +LG +QSG
Sbjct: 991  KDLEIRGAGNVLGAEQSG 1008


>gi|237715944|ref|ZP_04546425.1| transcription-repair coupling factor [Bacteroides sp. D1]
 gi|229443591|gb|EEO49382.1| transcription-repair coupling factor [Bacteroides sp. D1]
          Length = 1131

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/409 (33%), Positives = 217/409 (53%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 533 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 592

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  ++  +     VE ++   
Sbjct: 593 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 652

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G   I+IGTH +    +Q+  L L+IVDE+ +FGV  + KL Q   
Sbjct: 653 TAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 712

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   N  +EVI + +   
Sbjct: 713 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 770

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + +++  +I    E   ++++ER      H     +AI HG+M   + E ++  F
Sbjct: 771 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTELEKIILDF 822

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 823 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAP 882

Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           P   L+     RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 883 PLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 931


>gi|149278180|ref|ZP_01884318.1| transcription-repair coupling factor [Pedobacter sp. BAL39]
 gi|149230946|gb|EDM36327.1| transcription-repair coupling factor [Pedobacter sp. BAL39]
          Length = 1114

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 141/436 (32%), Positives = 228/436 (52%), Gaps = 24/436 (5%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K ++G   + +G +  ++  +  +  T  QE A  D+ +DM   + M R++ GDVG GKT
Sbjct: 536 KAQVGTAFDPDGYLETELEASFIYEDTPDQEKATSDVKKDMEAPHPMDRLVCGDVGFGKT 595

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            +A+ A   AV  G QA ++ P  ILA QH++      ++    V+ I         +  
Sbjct: 596 EIAIRAAFKAVANGKQAAVLVPTTILALQHFKTFSGRLKDFPCNVDYINRFKTNKQIKDT 655

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  +A G+  IIIGTH L    +++  L ++I+DE+ +FGV  + KL         L +T
Sbjct: 656 LALLAEGKVDIIIGTHRLLSKDVKFKDLGIMIIDEEQKFGVTSKEKLRVLRANVDTLTLT 715

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486
           ATPIPRTL  + +G  D+S ++  P  R+ + T +   N  D++I E ++  L  G + +
Sbjct: 716 ATPIPRTLHFSLMGARDLSIMSTPPPNRQAVNTELHVFN--DKLIQEAVQYELDRGGQVF 773

Query: 487 WICPQIEEKKESN--FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +I  ++ +  +     +++V +         + I I HG++     E VM  F NG   +
Sbjct: 774 FIHNRVNDLPQLGGLIQTLVPK---------ARIGIAHGQLDGDALEDVMLDFINGEKDV 824

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS--- 601
           L+ATT+IE G+D+ +A+ III +A  FGL+ LHQ+RGRVGR  + + C LL  PPLS   
Sbjct: 825 LVATTIIEAGLDIPNANTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLL-SPPLSTLT 883

Query: 602 KNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSL 655
             +  RLS ++   D   GF IA  DL  R  G +LG +QSG      F +    L +++
Sbjct: 884 SEARKRLSAIEEFSDLGSGFNIAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAI 943

Query: 656 LEIARKDAKHILTQDP 671
            E+   + K +   +P
Sbjct: 944 QELKDDEFKELFKNEP 959


>gi|150007271|ref|YP_001302014.1| putative transcription-repair coupling factor [Parabacteroides
           distasonis ATCC 8503]
 gi|149935695|gb|ABR42392.1| putative transcription-repair coupling factor [Parabacteroides
           distasonis ATCC 8503]
          Length = 1120

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/407 (33%), Positives = 216/407 (53%), Gaps = 13/407 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+L+  + K+E G     +  +  ++  +  +  T  Q  A  ++  DM     M R++ 
Sbjct: 523 LILLYSKRKQETGFAYTPDSFMQHELEASFIYEDTPDQMKATAEVKADMESTRPMDRLIC 582

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+   +  ++    ++ I+   
Sbjct: 583 GDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQTFCERLKDFPCKIDYISRAR 642

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G+ +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 643 TAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLIIDEEQKFGVSVKEKLRQLKV 702

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L MTATPIPRTL  + +G  D+S IT  P  R P++T +   N  D + E +   +
Sbjct: 703 NVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEVERFNP-DIIREAINFEM 761

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S   + ++I  +I+   E    ++V R     E   + +A+ HG+M     E ++  F N
Sbjct: 762 SRNGQVFFINNRIQNIYE--MEALVRR-----EVPDARVAVGHGQMEPEKLEKIILDFVN 814

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
               +LIAT+++E GIDV +A+ III NA+ FGL+ LHQLRGRVGR    + C LL  P 
Sbjct: 815 HEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPL 874

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             L++ +  RL  ++N  +   G  IA +DL  R  G +LG +QSG 
Sbjct: 875 TSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNMLGAEQSGF 921


>gi|289643147|ref|ZP_06475276.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca
           glomerata]
 gi|289507039|gb|EFD28009.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca
           glomerata]
          Length = 829

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 120/308 (38%), Positives = 183/308 (59%), Gaps = 25/308 (8%)

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV--EGKI 261
           EA+ ++H P    D       R RL +DE L  Q+AL   R   +K    P +   +G +
Sbjct: 261 EAYRLVHQPSSWADV---GRGRTRLKWDEALVLQVALAQRRHDVEKIAATPRHPRPDGLL 317

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           A     ++PF  T  Q +    I  ++++   M R+LQG+VGSGKT+VAL AM AAV+AG
Sbjct: 318 A-AFDASLPFPLTAGQRAVGDTIAAELARSFPMHRLLQGEVGSGKTVVALRAMLAAVDAG 376

Query: 322 GQAVIMAPIGILAQQHYEFIKKY-------------TQNTQIIVEIITGNMPQAHRRKAL 368
           GQAV++AP   LA QH   ++                + T+ +  ++TG++    RR+AL
Sbjct: 377 GQAVLLAPTETLAAQHLRSLRALLGPLGRAGELDAAAEATRAV--LVTGSLGAKARREAL 434

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMT 427
             +A G A +++GTHAL ++S+ +  L LV+VDEQHRFGV+QR  L  ++   PH+L+MT
Sbjct: 435 TAVADGSAGLVVGTHALLEESVVFRDLALVVVDEQHRFGVEQRDALRSRSDRPPHLLVMT 494

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKK 484
           ATPIPRT+ +T  GD+++S +TE PAGR PI T ++P       + V  R++  ++ G++
Sbjct: 495 ATPIPRTVAMTVFGDLEVSTLTELPAGRSPISTFVVPATAPKWANRVWGRIRDEVAAGRQ 554

Query: 485 AYWICPQI 492
           AY +CP+I
Sbjct: 555 AYVVCPRI 562



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 96/159 (60%), Gaps = 1/159 (0%)

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +  +HGR+   +KE  M  F  G   +L+ATTVIEVG+DV +A+++++ +A+ FG++QLH
Sbjct: 648 VEALHGRLPPDEKEETMTRFAAGELDVLVATTVIEVGVDVPNATVMVVMDADRFGVSQLH 707

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG     C+L         ++ RL+ +  T DG  +A  DL QR+EG++LG  
Sbjct: 708 QLRGRVGRGSAPGWCLLYTDVEEGSPAWERLAAVAATSDGAELARLDLAQRREGDVLGAA 767

Query: 638 QS-GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           QS G     + +    + L+  AR +A  ++  DP L++
Sbjct: 768 QSGGRRSLRLLELLRDEELIRCARGEASVLVDADPQLSA 806


>gi|291087006|ref|ZP_06345122.2| transcription-repair coupling factor [Clostridium sp. M62/1]
 gi|291076614|gb|EFE13978.1| transcription-repair coupling factor [Clostridium sp. M62/1]
          Length = 1187

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/377 (33%), Positives = 212/377 (56%), Gaps = 15/377 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  AI  + +DM  +  M R++ GDVG GKT +AL A   A++ G Q V + P
Sbjct: 629 PYEETEDQLEAIDAVKRDMESRKIMDRLICGDVGYGKTEIALRAAFKAIQEGKQVVYLVP 688

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHY    +  ++  + V++++     A +++ LE +  G   ++IGTH +    
Sbjct: 689 TTILAQQHYNTFVQRMKDFPVRVDMLSRFRTPAEQKRTLEDLKKGFVDVLIGTHRVLSKD 748

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+I+DE+ RFGV  + K+ +      V+ +TATPIPRTL ++ +G  D+S + 
Sbjct: 749 VEFKSLGLLIIDEEQRFGVAHKEKIKKLKENVDVITLTATPIPRTLHMSLIGIRDMSVLE 808

Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           E P  R PI+T ++  N  DE++ E +   ++ G + Y++  ++     +N   +     
Sbjct: 809 EPPVDRLPIQTYVMEYN--DEMVREAINREVARGGQVYYVYNRV-----NNIEEIANHVA 861

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           SL     + +   HG+M + + E +M  F NG   +L++TT+IE G+++ +A+ III +A
Sbjct: 862 SLVPD--AQVTFAHGQMREHELERIMLDFVNGDIDVLVSTTIIETGLNIPNANTIIIHDA 919

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623
           +  GL+QL+Q+RGRVGR    S   L+Y     L + +  RL  ++  TE   G  IA  
Sbjct: 920 DRLGLSQLYQIRGRVGRSSRTSYAFLMYRRDKLLREEAEKRLQAIREFTELGSGIKIAMR 979

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G ILG +Q G
Sbjct: 980 DLEIRGAGNILGAEQHG 996


>gi|313884578|ref|ZP_07818339.1| transcription-repair coupling factor [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620362|gb|EFR31790.1| transcription-repair coupling factor [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 1181

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 212/378 (56%), Gaps = 19/378 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q ++ ++I  DM +   M R+L GDVG GKT VA+ A+  AV  G Q   + P 
Sbjct: 623 FVETPDQLTSSQEIKADMEKSRPMDRLLVGDVGYGKTEVAMRAIFKAVMDGKQVAFLVPT 682

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LAQQHY  ++    +    + +++  + +  +++ + ++  G   I++GTH +    I
Sbjct: 683 TVLAQQHYNTLQARFNDWPFEIGLLSRFVSRVQQKETIAKLKSGAVSIVVGTHRILSKDI 742

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S I  
Sbjct: 743 VFNDLGLLIVDEEQRFGVKHKERLKQLKAQVDVLTLTATPIPRTLHMSMIGIRDLSVIET 802

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R P++T I+  N   I   IER    ++ G + +++  ++         ++ +R +
Sbjct: 803 PPNNRFPVQTYIMERNEGAIKTAIER---EMARGGQCFYLYNRVA--------TIYQRAD 851

Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            + +    + +A+ HG+MS+ + E+V+  F  G   +L+ TT+IE G+D+ +A+ + +++
Sbjct: 852 EISQLVPQARVAVAHGQMSETELETVLVDFIQGLYDVLVTTTIIETGVDIPNANTLFVDH 911

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622
           A+  GL+ L+QLRGRVGR   ++   L+Y P   LS+ S  RL  ++   D   GF IA 
Sbjct: 912 ADKMGLSTLYQLRGRVGRTHRVAYAYLMYEPFKQLSEVSEKRLKAIREFTDLGSGFKIAM 971

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G +LG +QSG
Sbjct: 972 RDLSIRGAGNLLGKQQSG 989


>gi|260170991|ref|ZP_05757403.1| transcription-repair coupling factor [Bacteroides sp. D2]
 gi|315919312|ref|ZP_07915552.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693187|gb|EFS30022.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1120

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/409 (33%), Positives = 217/409 (53%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 526 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 585

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  ++  +     VE ++   
Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 645

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G   I+IGTH +    +Q+  L L+IVDE+ +FGV  + KL Q   
Sbjct: 646 TAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 705

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   N  +EVI + +   
Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 763

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + +++  +I    E   ++++ER      H     +AI HG+M   + E ++  F
Sbjct: 764 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTELEKIILDF 815

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 816 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAP 875

Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           P   L+     RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 876 PLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 924


>gi|160882450|ref|ZP_02063453.1| hypothetical protein BACOVA_00401 [Bacteroides ovatus ATCC 8483]
 gi|156112162|gb|EDO13907.1| hypothetical protein BACOVA_00401 [Bacteroides ovatus ATCC 8483]
          Length = 1120

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/409 (33%), Positives = 217/409 (53%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 526 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATIDVKADMESDRPMDRLVC 585

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  ++  +     VE ++   
Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 645

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G   I+IGTH +    +Q+  L L+IVDE+ +FGV  + KL Q   
Sbjct: 646 TAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKV 705

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   N  +EVI + +   
Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 763

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + +++  +I    E   ++++ER      H     +AI HG+M   + E ++  F
Sbjct: 764 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTELEKIILDF 815

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 816 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAP 875

Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           P   L+     RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 876 PLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 924


>gi|298384566|ref|ZP_06994126.1| transcription-repair coupling factor [Bacteroides sp. 1_1_14]
 gi|298262845|gb|EFI05709.1| transcription-repair coupling factor [Bacteroides sp. 1_1_14]
          Length = 1127

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/410 (33%), Positives = 219/410 (53%), Gaps = 19/410 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  ++  DM     M R++ 
Sbjct: 526 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATMEVKADMESDRPMDRLVC 585

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  ++  ++    VE ++   
Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKDLPCRVEYLSRAR 645

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G+  I+IGTH +    +Q+  L L+I+DE+ +FGV  + KL Q   
Sbjct: 646 TAAQSKAVLKGLKEGEVSILIGTHRILGKDVQFKDLGLLIIDEEQKFGVSVKEKLRQLKV 705

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   N  +EVI + +   
Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 763

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + +++  +I    E   ++++ER      H     +AI HG+M     E ++  F
Sbjct: 764 MSRNGQVFFVNNRIANLPE--LKAMIER------HIPDCRVAIGHGQMEPTQLEQIIFDF 815

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 816 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 874

Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PPLS        RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 875 PPLSSLTAEGKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 924


>gi|295090936|emb|CBK77043.1| transcription-repair coupling factor [Clostridium cf.
           saccharolyticum K10]
          Length = 1185

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/377 (33%), Positives = 212/377 (56%), Gaps = 15/377 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  AI  + +DM  +  M R++ GDVG GKT +AL A   A++ G Q V + P
Sbjct: 627 PYEETEDQLEAIDAVKRDMESRKIMDRLICGDVGYGKTEIALRAAFKAIQEGKQVVYLVP 686

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHY    +  ++  + V++++     A +++ LE +  G   ++IGTH +    
Sbjct: 687 TTILAQQHYNTFVQRMKDFPVRVDMLSRFRTPAEQKRTLEDLKKGFVDVLIGTHRVLSKD 746

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+I+DE+ RFGV  + K+ +      V+ +TATPIPRTL ++ +G  D+S + 
Sbjct: 747 VEFKSLGLLIIDEEQRFGVAHKEKIKKLKENVDVITLTATPIPRTLHMSLIGIRDMSVLE 806

Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           E P  R PI+T ++  N  DE++ E +   ++ G + Y++  ++     +N   +     
Sbjct: 807 EPPVDRLPIQTYVMEYN--DEMVREAINREVARGGQVYYVYNRV-----NNIEEIANHVA 859

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           SL     + +   HG+M + + E +M  F NG   +L++TT+IE G+++ +A+ III +A
Sbjct: 860 SLVPD--AQVTFAHGQMREHELERIMLDFVNGDIDVLVSTTIIETGLNIPNANTIIIHDA 917

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623
           +  GL+QL+Q+RGRVGR    S   L+Y     L + +  RL  ++  TE   G  IA  
Sbjct: 918 DRLGLSQLYQIRGRVGRSSRTSYAFLMYRRDKLLREEAEKRLQAIREFTELGSGIKIAMR 977

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G ILG +Q G
Sbjct: 978 DLEIRGAGNILGAEQHG 994


>gi|73541054|ref|YP_295574.1| transcription-repair coupling factor [Ralstonia eutropha JMP134]
 gi|72118467|gb|AAZ60730.1| Transcription-repair coupling factor [Ralstonia eutropha JMP134]
          Length = 1150

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 224/431 (51%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R         A ++  L  R+  ++    P++   K  +    +  F  T  Q 
Sbjct: 557 QWDKAKRRAAQQIRDTAAELLNLYARRAAREGFAFPLSP--KDYETFAESFGFEETPDQA 614

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QH+
Sbjct: 615 AAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVAMLAPTTLLAEQHF 674

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +        + +  ++    +     A+++I  G   I+IGTH L  D +++ +L LV
Sbjct: 675 QTLSDRFAEWPVRIVELSRFKTKKEIDAAVKQINEGTVDIVIGTHKLLSDEVKFQRLGLV 734

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 735 IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 794

Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           KT    + R ++ + R  ++  L  G + Y++  ++E  E K +    +V          
Sbjct: 795 KTF---VRREEDGVIREAILRELKRGGQVYFLHNEVETIENKRAKLAELVPE-------- 843

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + IA+ HG+M + + E VM  F +    +L+ TT+IE GIDV  A+ I+I  A+ FGLA
Sbjct: 844 -ARIAVAHGQMHERELERVMRDFVSRRDNILLCTTIIETGIDVPTANTILIHRADKFGLA 902

Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QLHQLRGRVGR    +   LL H    L+K +  RL  ++  E+   GF +A  DL+ R 
Sbjct: 903 QLHQLRGRVGRSHHQAYAYLLVHDVDGLTKQAGRRLEAIQQMEELGSGFYLAMHDLEIRG 962

Query: 630 EGEILGIKQSG 640
            GE+LG KQSG
Sbjct: 963 AGEVLGDKQSG 973


>gi|81429216|ref|YP_396217.1| transcription-repair coupling factor [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610859|emb|CAI55911.1| Transcription-repair coupling factor (TRCF) [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 1173

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 144/429 (33%), Positives = 223/429 (51%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW     +  A  E +A  +  L  +++ +K    P +   ++         +  T  Q 
Sbjct: 569 EWQKTKSKVSAKIEDIADDLIELYAQREAEKGYAFPKD--DQLQADFENQFAYPETDDQL 626

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I  DM +   M R+L GDVG GKT VAL A   AV AG Q   + P  ILAQQHY
Sbjct: 627 RSTAEIKHDMEKVRPMDRLLVGDVGFGKTEVALRAAFKAVAAGKQVAFLVPTTILAQQHY 686

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +     +  + + +++    +      L+ +  GQ  I+IGTH L    + +  L L+
Sbjct: 687 ENMLARFADFPVELGLLSRFKTRKEVTATLKGLEKGQVDIVIGTHRLLSKDVVFKDLGLL 746

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 747 IVDEEQRFGVKHKERLKQLKAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPI 806

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++  N   + E IER    L    + +++  ++     S+    V+   +L    T 
Sbjct: 807 QTYVMEQNAGAMREAIER---ELERNGQVFYLHNRV-----SDIEQTVDEIQALVPEATV 858

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             A  HG+M++   E V+  F  G   +L+ TT+IE G+D+ + + +I+E+A+H+GL+QL
Sbjct: 859 GYA--HGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNVNTMIVEDADHYGLSQL 916

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    +Y P   L++ S  RL  +K+ TE   GF IA  DL  R  G
Sbjct: 917 YQLRGRIGRSSRVAYGYFMYKPDKVLTEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAG 976

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 977 NLLGKQQHG 985


>gi|325853962|ref|ZP_08171478.1| transcription-repair coupling factor [Prevotella denticola CRIS
           18C-A]
 gi|325484299|gb|EGC87229.1| transcription-repair coupling factor [Prevotella denticola CRIS
           18C-A]
          Length = 1175

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/401 (33%), Positives = 217/401 (54%), Gaps = 17/401 (4%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++E G   + +  +  ++  +  +  T  Q  A +++ QDM     M R++ GDVG GKT
Sbjct: 580 RREKGFAFSPDSFMQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKT 639

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A     Q  ++ P  +LA QHY+  KK  ++  + V+ ++        R+ 
Sbjct: 640 EVAIRAAFKAAVDNKQVAVLVPTTVLAFQHYQTFKKRLKDMPVRVDYLSRARSARQTRQV 699

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  +A G+ +I++GTH L   S+++  L L+I+DE+ +FGV  + KL Q  T    L M+
Sbjct: 700 LADLAEGKINILVGTHKLIGKSVKWNDLGLLIIDEEQKFGVSTKEKLRQLKTNVDTLTMS 759

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486
           ATPIPRTL  + +G  D+S +   P  R PI+T I   +   EVI + +   +S   + Y
Sbjct: 760 ATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIATFSH--EVIADAINFEMSRNGQVY 817

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++  +I     SN + +    N + ++     +AI HG+M   + E ++  F N    +L
Sbjct: 818 FVNDRI-----SNLQEIA---NLIRKYVPDCRVAIGHGQMKPEELEKIVMGFMNYDYDVL 869

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKN 603
           ++TT++E GID+ +A+ III +A  FGL+ LHQ+RGRVGR  + + C LL  P   L+  
Sbjct: 870 LSTTIVENGIDISNANTIIINDAHRFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNTE 929

Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           +  RL  L+   D   GF +A +DL  R  G +LG +QSG 
Sbjct: 930 ARRRLEALETFSDLGSGFNLAMQDLDIRGAGNLLGSEQSGF 970


>gi|315924903|ref|ZP_07921120.1| transcription-repair coupling factor [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621802|gb|EFV01766.1| transcription-repair coupling factor [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 1144

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 205/378 (54%), Gaps = 16/378 (4%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q   I++I  DM +   M R+L GDVG GKT VAL A   AV    Q  ++ 
Sbjct: 596 FPYEETDDQLRCIEEIKADMEKPVPMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVALLV 655

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILAQQHYE ++       I VE+++       ++  L  +A G+  +++GTH L   
Sbjct: 656 PTTILAQQHYETMRSRFARYPITVEVMSRFRTPKEQKAVLADLAAGRVDVVVGTHRLLSK 715

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +++  L L+IVDE+ RFGV+ + KL        VL ++ATPIPRTL ++  G  D+S I
Sbjct: 716 DMRFKDLGLLIVDEEQRFGVRAKEKLKSLRENVDVLTLSATPIPRTLHMSMTGIRDMSVI 775

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVER 506
            E PAGR+P++T ++  N +  V + +   +  G + Y++  C +   ++    R +V  
Sbjct: 776 AEPPAGRRPVRTYVMRDNAV-VVGDAIAREIRRGGQVYFVHNCIKDLNERADQVRRMVP- 833

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                    + +   HG+M     E +M +F +    +L+ T ++E G+DV +A+ ++++
Sbjct: 834 --------GARVVTAHGQMPGEALERIMQAFVDKAYDVLVTTAIVESGLDVRNANTMVVD 885

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPLSKNSYTRLSVLKNTE---DGFLIAE 622
           + +  GL+QL+QLRGRVGR    + C +LY    LS  +  RL  +K+      GF +A 
Sbjct: 886 DGDAMGLSQLYQLRGRVGRSSNQAFCYILYKRRALSDVAQKRLKAIKDFTAFGSGFKVAM 945

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G ILG +QSG
Sbjct: 946 RDLEIRGAGNILGAEQSG 963


>gi|162446907|ref|YP_001620039.1| transcription-repair coupling factor [Acholeplasma laidlawii PG-8A]
 gi|161985014|gb|ABX80663.1| transcription-repair coupling factor (superfamily II helicase)
           [Acholeplasma laidlawii PG-8A]
          Length = 1143

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/382 (34%), Positives = 205/382 (53%), Gaps = 17/382 (4%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           ++  +  T  Q+ AI  + +DM     M R++ GDVG GKT VAL A   AV    Q   
Sbjct: 589 KDFNYDETIDQQKAIDAVFEDMESSKPMDRLIAGDVGYGKTEVALRAAFKAVVDAKQVAY 648

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  +LA+QHY   K   +     V +++  + +  +++ LE+IA G   ++IGTH L 
Sbjct: 649 LVPTTVLARQHYLTFKDRFEKYGGSVALLSRYVSKREQKEVLEKIAKGYIDVVIGTHRLL 708

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            D I +  L L I+DE+ RFGVQ + K+ +       L ++ATPIPRTL +   G  D+S
Sbjct: 709 SDDIVFKDLGLFIIDEEQRFGVQHKEKIKEIKVNVDTLTLSATPIPRTLQMAMYGLKDLS 768

Query: 447 KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            I   P  R P++T ++      I E I+R    LS G + +++    E        + V
Sbjct: 769 MIDTPPLNRYPVQTYVVERQPALIKEAIDR---ELSRGGQVFYLFNNTER-----MEAQV 820

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +   L  +  + I   HG+M+    E  +  F      +L++TT+IE G+D+ + + +I
Sbjct: 821 LKLQQLVPN--ARITYAHGKMTKNRIEDTLSRFVEKEFDILVSTTIIETGVDIPNTNTLI 878

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
           I +A+H GLAQL+QLRGRVGR + I+   L++  +  ++  +  RLSV+++  D   GF 
Sbjct: 879 IHDADHLGLAQLYQLRGRVGRSDRIAYAYLMFDGYKDVNDEAKKRLSVIEDFTDLGSGFK 938

Query: 620 IAEEDLKQRKEGEILGIKQSGM 641
           IA  DL  R  G+ILG +QSG 
Sbjct: 939 IALRDLGIRGAGDILGEEQSGF 960


>gi|326316443|ref|YP_004234115.1| transcription-repair coupling factor [Acidovorax avenae subsp. avenae
            ATCC 19860]
 gi|323373279|gb|ADX45548.1| transcription-repair coupling factor [Acidovorax avenae subsp. avenae
            ATCC 19860]
          Length = 1163

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 152/424 (35%), Positives = 226/424 (53%), Gaps = 29/424 (6%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            ++   +  F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   AV  G 
Sbjct: 601  EQFANDFGFEETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGK 660

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEII---TGNMPQAHRRKALERIAHGQAHI 378
            Q   +AP  +LA+QHY+  + ++++    I E+    +G    A    A++ I  G   I
Sbjct: 661  QVAFLAPTTLLAEQHYQTLVDRFSKWPVKIAEVSRFRSGKEITA----AIKGIGDGTVDI 716

Query: 379  IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            ++GTH L  +S +++ L L+I+DE+HRFGV+ + ++ Q      VL +TATPIPRTL + 
Sbjct: 717  VVGTHKLLSESTKFHNLGLLIIDEEHRFGVRHKEQMKQLRAEVDVLTLTATPIPRTLGMA 776

Query: 439  SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKE 497
              G  D+S I   P  R  IKT +   N    VI E +   L  G + Y++  ++E    
Sbjct: 777  LEGLRDLSVIATAPQRRLAIKTFV--RNEGTGVIREAVLRELKRGGQCYFLHNEVE---- 830

Query: 498  SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                ++  R   L E    + IA+ HG+M + + E VM  F      +L+ +T+IE GID
Sbjct: 831  ----TIENRRQKLEEILPEARIAVAHGQMPERELEKVMRDFVAQRYNILLCSTIIETGID 886

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNT 614
            V  A+ II+  A+ FGLAQLHQLRGRVGR    +   L+      L+K +  RL  ++  
Sbjct: 887  VPTANTIIMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDVDGLTKQAAQRLDAIQQM 946

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            E+   GF +A  DL+ R  GE+LG  QSG    L    +L++ +L  A K  K    ++P
Sbjct: 947  EELGSGFYLAMHDLEIRGAGEVLGENQSG--NMLEVGFQLYNEMLSEAVKSLK--AGKEP 1002

Query: 672  DLTS 675
            DL S
Sbjct: 1003 DLLS 1006


>gi|213389870|gb|ACJ45997.1| putative ATP-dependent DNA helicase [Palm lethal yellowing
           phytoplasma]
          Length = 623

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 150/465 (32%), Positives = 245/465 (52%), Gaps = 26/465 (5%)

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           ++ E +  + L+K +  S  +AF  +H P+  +     + A  R  ++E L      +  
Sbjct: 156 IIKENLNNNFLKKYNLISRKKAFENLHIPQNKQSL---NQALIRFKFEEALKINKKWMEE 212

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +     +I +  N + K   KI++ I F  TK+Q+  I DI  D  +++   R++QGDVG
Sbjct: 213 KHHLISKIPLIFNNKEKFINKIIKKITFELTKNQKEIIDDIFDDFQKQHYTQRLIQGDVG 272

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQA 362
           SGKT+++ I+  A +    Q V+MAP  IL++QHY   K +    +   +   T N+   
Sbjct: 273 SGKTIISFISAIAVIAKKKQVVMMAPTEILSKQHYSNFKNFFPEIKSFCLSSKTKNL--- 329

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
             +K  + I      II GTH L   ++    L L+I+DE H+FG + + K+T K     
Sbjct: 330 --KKIKQEIQKNSIQIIFGTHIL--SNLDIPNLGLIIIDETHKFGTEIKKKITAKNIPSD 385

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID--EVIERLKVVLS 480
           +L +TATPIP+TL    LG +  S + EKP     IK   I   +ID  E+I  L     
Sbjct: 386 ILYLTATPIPKTLASIYLGFLSTSLLIEKPN----IKQSKIITQKIDFNEIINILNKNQY 441

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + ++ Y + P I++ K+      +E+  S L  +   ++  +HG+    ++E +M +F N
Sbjct: 442 KKEQTYIVVPAIKDSKKI---YNIEKITSFLENNKIKNLYSLHGKKKFEEQEKIMYNFTN 498

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +LIAT++IEVGID+ + + III  AE+FGL+QLHQLRGR+GR  + + C +     
Sbjct: 499 NNKGILIATSIIEVGIDIENVTTIIILGAEYFGLSQLHQLRGRIGRNNKENYCFI----- 553

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           +S+    R  + +   +GF ++E DLK R  G  L  +QSG  K+
Sbjct: 554 VSEKDNERFKIFQKENNGFKLSEFDLKIRGPGSFLRKEQSGFLKY 598


>gi|262382158|ref|ZP_06075296.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262297335|gb|EEY85265.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 1127

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/407 (33%), Positives = 216/407 (53%), Gaps = 13/407 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+L+  + K+E G     +  +  ++  +  +  T  Q  A  ++  DM     M R++ 
Sbjct: 530 LILLYSKRKQETGFAYTPDSFMQHELEASFIYEDTPDQMKATAEVKADMESTRPMDRLIC 589

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+   +  ++    ++ I+   
Sbjct: 590 GDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQTFCERLKDFPCKIDYISRAR 649

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G+ +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 650 TAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLIIDEEQKFGVSVKEKLRQLKV 709

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L MTATPIPRTL  + +G  D+S IT  P  R P++T +   N  D + E +   +
Sbjct: 710 NVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEVERFNP-DIIREAINFEM 768

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S   + ++I  +I+   E    ++V R     E   + +A+ HG+M     E ++  F N
Sbjct: 769 SRNGQVFFINNRIQNIYE--MEALVRR-----EVPDARVAVGHGQMEPEKLEKIILDFVN 821

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
               +LIAT+++E GIDV +A+ III NA+ FGL+ LHQLRGRVGR    + C LL  P 
Sbjct: 822 YEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPL 881

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             L++ +  RL  ++N  +   G  IA +DL  R  G +LG +QSG 
Sbjct: 882 TSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNMLGAEQSGF 928


>gi|229829772|ref|ZP_04455841.1| hypothetical protein GCWU000342_01869 [Shuttleworthia satelles DSM
           14600]
 gi|229791761|gb|EEP27875.1| hypothetical protein GCWU000342_01869 [Shuttleworthia satelles DSM
           14600]
          Length = 1185

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 207/377 (54%), Gaps = 15/377 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  AI+ + +DM     M R++ GDVG GKT +AL A   A + G Q V + P
Sbjct: 631 PYEETEGQLEAIEAVKKDMESPKIMDRLICGDVGFGKTEIALRAAFKAAQEGKQVVYLVP 690

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHY+   +      I V ++     +  + + +  +A G+  I+IGTH      
Sbjct: 691 TTILAQQHYDTFVQRMAPYPIKVGLLCRFRNKTQQAQTVSELASGRVDIVIGTHRALSRD 750

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+I+DE+ RFGV+ + K+ Q      VL ++ATPIPRTL ++ +G  D+S + 
Sbjct: 751 VVFRDLGLLIIDEEQRFGVRHKEKIKQMKKNVDVLSLSATPIPRTLHMSLVGIRDMSILD 810

Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           E P  R PI+T +   N  DE+I E +   ++ G + Y++  ++     +    +  R  
Sbjct: 811 EAPMERTPIQTFVFEHN--DEMIREAVLREMARGGQIYYVFNRV-----AQIADMTARLQ 863

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L     + +A  HGRMS    E++M  F +G   LL++TT+IE+G+D+ + + III++A
Sbjct: 864 KLLPE--AHVAYAHGRMSQTRLENIMVDFIDGEIDLLVSTTIIEIGLDISNVNTIIIDDA 921

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEE 623
           ++ GL+QL+QLRGRVGR    +    +Y     L + +  RL  +K   D   GF IA  
Sbjct: 922 DNMGLSQLYQLRGRVGRSNRTAYAFFMYRRGKLLKEVAEKRLLAIKEFSDLGSGFKIAMR 981

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G +LG  QSG
Sbjct: 982 DLEIRGAGNVLGESQSG 998


>gi|218130501|ref|ZP_03459305.1| hypothetical protein BACEGG_02090 [Bacteroides eggerthii DSM 20697]
 gi|317474007|ref|ZP_07933286.1| transcription-repair coupling factor [Bacteroides eggerthii
           1_2_48FAA]
 gi|217987380|gb|EEC53710.1| hypothetical protein BACEGG_02090 [Bacteroides eggerthii DSM 20697]
 gi|316909849|gb|EFV31524.1| transcription-repair coupling factor [Bacteroides eggerthii
           1_2_48FAA]
          Length = 1128

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/409 (33%), Positives = 219/409 (53%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 531 LIKLYSQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSKATADVKADMESTRPMDRLVC 590

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  K+  +     VE ++   
Sbjct: 591 GDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKERLKGLPCRVEYLSRAR 650

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  ++ +A G+ +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 651 TAAQAKAVVKGLAGGEVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQLKV 710

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I   P  R PI+T +   N  DE+I + +   
Sbjct: 711 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFN--DEIITDAINFE 768

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +S   + +++  +I    E   ++++ER           I I HG+M   + E ++  F 
Sbjct: 769 MSRNGQVFFVNNRISNLVE--LKAMIERNIP-----DCRICIGHGQMEPAELEKIILDFV 821

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  P
Sbjct: 822 NYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-AP 880

Query: 599 PLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PLS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 881 PLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 929


>gi|300768957|ref|ZP_07078848.1| transcription-repair coupling factor [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|300493478|gb|EFK28655.1| transcription-repair coupling factor [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 1175

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 140/429 (32%), Positives = 225/429 (52%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   R+  A  E +A ++  L  +++ +K    P   +         + P+  T  Q 
Sbjct: 568 EWTKAKRKVAAKIEDIADELVDLYAKREAEKGYAFP--PDDSYQDDFDNDFPYPETPDQI 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I  DM +   M R+L GDVG GKT VAL A   A+EAG Q   + P  ILAQQHY
Sbjct: 626 RSINEIKHDMERPKPMDRLLVGDVGYGKTEVALRAAFKAIEAGKQVAFLVPTTILAQQHY 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +    +   I V +++        ++ ++++  G+  I++GTH L    + +  L L+
Sbjct: 686 ETMLNRFEGYPINVGMLSRFRTTKEMKETVQQLKSGEIDIVVGTHRLLSKDVAFADLGLL 745

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L     +  VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746 IIDEEQRFGVKHKERLKALKASVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPI 805

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++  N   I E IER    +    + +++  ++      +   VV +   L     +
Sbjct: 806 QTYVMEQNFGVIKEGIER---EMQRNGQVFYLHNRVH-----DIDKVVAQIKDLVPD--A 855

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++A I G+M +   E ++  F  G   +L+ TT+IE G+D+ + + + +ENA+  GL+QL
Sbjct: 856 AVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVNTLFVENADRMGLSQL 915

Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++     Y  +  L++    RL  +K+ TE   GF IA  DL  R  G
Sbjct: 916 YQLRGRIGRSSRVAYAYFTYQQNKVLTEVGEKRLQAIKDFTELGSGFKIAMRDLSIRGAG 975

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 976 NLLGKQQHG 984


>gi|159044110|ref|YP_001532904.1| transcription repair coupling factor [Dinoroseobacter shibae DFL
           12]
 gi|157911870|gb|ABV93303.1| transcription repair coupling factor [Dinoroseobacter shibae DFL
           12]
          Length = 1160

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 139/399 (34%), Positives = 225/399 (56%), Gaps = 23/399 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q SAI+D++ D++    M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 604 PYTETDDQLSAIEDVVHDLAAGTPMDRLICGDVGFGKTEVAMRAAFIAALSGVQVAVIAP 663

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+      +   + V  ++  +P        + +A G   I++GTHAL    
Sbjct: 664 TTLLARQHYKSFADRFRGFPLEVRPLSRFVPAKAAADTRKGLAAGSVDIVVGTHALLAKG 723

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++++ L L+I+DE+ RFGV  + +L +  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 724 VRFHNLGLLIIDEEQRFGVGHKERLKELRSDVHVLTLTATPIPRTLQLSLSGVRDLSIIG 783

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P+I++  E      +E 
Sbjct: 784 TPPVDRLSIRTY---VSEFDPVTLR-EALLREHYRGGQSFFVVPRIKDIPE------IEA 833

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L +     S  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +II
Sbjct: 834 F--LRDQVPEVSFVVAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMII 891

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
             A+ FGL+QL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +
Sbjct: 892 HRADMFGLSQLYQIRGRVGRAKTRAYAYLTTKPRMKLTPAAEKRLRVLGSLDSLGAGFTL 951

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           A +DL  R  G +LG  QSG  +F     EL+ S+LE A
Sbjct: 952 ASQDLDIRGAGNLLGEAQSG--QFREVGFELYQSMLEEA 988


>gi|301310728|ref|ZP_07216667.1| transcription-repair coupling factor [Bacteroides sp. 20_3]
 gi|300832302|gb|EFK62933.1| transcription-repair coupling factor [Bacteroides sp. 20_3]
          Length = 1120

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 136/407 (33%), Positives = 216/407 (53%), Gaps = 13/407 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+L+  + K+E G     +  +  ++  +  +  T  Q  A  ++  DM     M R++ 
Sbjct: 523 LILLYSKRKQETGFAYTPDSFMQHELEASFIYEDTPDQMKATAEVKADMESTRPMDRLIC 582

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+   +  ++    ++ I+   
Sbjct: 583 GDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQTFCERLKDFPCKIDYISRAR 642

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G+ +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 643 TAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLIIDEEQKFGVSVKEKLRQLKV 702

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L MTATPIPRTL  + +G  D+S IT  P  R P++T +   N  D + E +   +
Sbjct: 703 NVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEVERFNP-DIIREAINFEM 761

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S   + ++I  +I+   E    ++V R     E   + +A+ HG+M     E ++  F N
Sbjct: 762 SRNGQVFFINNRIQNIYE--MEALVRR-----EVPDARVAVGHGQMEPEKLEKIILDFVN 814

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
               +LIAT+++E GIDV +A+ III NA+ FGL+ LHQLRGRVGR    + C LL  P 
Sbjct: 815 YEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPL 874

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             L++ +  RL  ++N  +   G  IA +DL  R  G +LG +QSG 
Sbjct: 875 TSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNMLGAEQSGF 921


>gi|298375260|ref|ZP_06985217.1| transcription-repair coupling factor [Bacteroides sp. 3_1_19]
 gi|298267760|gb|EFI09416.1| transcription-repair coupling factor [Bacteroides sp. 3_1_19]
          Length = 1120

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 136/407 (33%), Positives = 216/407 (53%), Gaps = 13/407 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+L+  + K+E G     +  +  ++  +  +  T  Q  A  ++  DM     M R++ 
Sbjct: 523 LILLYSKRKQETGFAYTPDSFMQHELEASFIYEDTPDQMKATAEVKADMESTRPMDRLIC 582

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+   +  ++    ++ I+   
Sbjct: 583 GDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQTFCERLKDFPCKIDYISRAR 642

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G+ +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 643 TAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLIIDEEQKFGVSVKEKLRQLKV 702

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L MTATPIPRTL  + +G  D+S IT  P  R P++T +   N  D + E +   +
Sbjct: 703 NVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEVERFNP-DIIREAINFEM 761

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S   + ++I  +I+   E    ++V R     E   + +A+ HG+M     E ++  F N
Sbjct: 762 SRNGQVFFINNRIQNIYE--MEALVRR-----EVPDARVAVGHGQMEPEKLEKIILDFVN 814

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
               +LIAT+++E GIDV +A+ III NA+ FGL+ LHQLRGRVGR    + C LL  P 
Sbjct: 815 YEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPL 874

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             L++ +  RL  ++N  +   G  IA +DL  R  G +LG +QSG 
Sbjct: 875 TSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNMLGAEQSGF 921


>gi|293400065|ref|ZP_06644211.1| transcription-repair coupling factor [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306465|gb|EFE47708.1| transcription-repair coupling factor [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 1149

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 135/430 (31%), Positives = 229/430 (53%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A    LA ++  L   +   + IG     +  + ++   +  +  T  Q 
Sbjct: 551 EWEKTKKKVSAKIAELADRLIHLYANRD--EHIGHAFAKDTAMQKEFEDDFDYELTIDQA 608

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A+K+I  DM     M R+L GDVG GKT VA  A   AV    Q   + P  IL+ QH+
Sbjct: 609 KAVKEIKSDMESSKPMDRLLCGDVGFGKTEVAARAAFKAVSDNKQVAFLCPTTILSLQHF 668

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +  +   +N  + + ++   +   ++++ ++ +  G   I+IGTH L    IQ+  L L+
Sbjct: 669 KTFQHRFRNFPVNIAVVNRFIKPQNQKQIIKDLKEGNLDILIGTHRLLSKDIQFKDLGLL 728

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + K+ +   +  VL ++ATPIPRTL ++ +G   +S++   P  R P+
Sbjct: 729 VIDEEQRFGVEHKEKIKELKNSVDVLSLSATPIPRTLQMSLIGIRSLSQLETPPLNRMPV 788

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +I  N   I E+I+R    L+   + +++         +N + +      L E    
Sbjct: 789 QTYVIEKNFSMIKEIIQR---ELARNGQVFYLY--------NNVKEIYNVARKLREALPD 837

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             I + HG+MS  D E VM  F +   ++L+ TT+IE GID+ +A+ I+IE+A+HFGL+Q
Sbjct: 838 VEIGVAHGQMSRDDIEDVMMQFTDNQYQVLVCTTIIETGIDIPNANTILIEDADHFGLSQ 897

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
           L+Q++GRVGR + ++   L+Y P   LS+ +  RL  +K       G+ IA  DL  R  
Sbjct: 898 LYQIKGRVGRSDRLAYAYLMYSPQRQLSEVAMKRLKSIKEFTQLGSGYKIAMRDLTIRGA 957

Query: 631 GEILGIKQSG 640
           G++LG +Q+G
Sbjct: 958 GDMLGPQQAG 967


>gi|329769841|ref|ZP_08261241.1| hypothetical protein HMPREF0433_01005 [Gemella sanguinis M325]
 gi|328838017|gb|EGF87639.1| hypothetical protein HMPREF0433_01005 [Gemella sanguinis M325]
          Length = 653

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 143/408 (35%), Positives = 232/408 (56%), Gaps = 19/408 (4%)

Query: 242 LMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L++   K+E+  G   +++G +  +   + PF PT  Q  A ++I +DM ++  M R+L 
Sbjct: 44  LIKLYIKRELSSGYAYSLDGSMQYEFEADFPFVPTDDQLKATEEIKRDMEKERPMDRLLC 103

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
           GDVG GKT VA+     AV  G Q  ++ P  +LA+QHY+ F+ ++ +N  I +E+++  
Sbjct: 104 GDVGFGKTEVAMRVAFKAVMDGKQVAVLVPTTLLAEQHYDNFVNRF-ENFPINIEVVSRF 162

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                     +R+  G+  I+IGTH L  D   Y  L L+I+DE+ RFGV+ + K+    
Sbjct: 163 NTAKDITNICKRLKEGKIDIMIGTHKLLNDKFVYNDLGLLIIDEEQRFGVKHKEKIKHLK 222

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               VL ++ATPIPRTL ++ +G  D+S I   P  R+PI+T +   N +  + E +   
Sbjct: 223 NTVDVLTLSATPIPRTLHMSLIGIRDLSVIETPPKERQPIQTFVTSQNNM-VIKEAVMNE 281

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +S G + +++  ++E        S+ E++  L +     +IA  HGRM+  + E++M   
Sbjct: 282 VSRGGQVFYVYNKVE--------SIDEKYLELKKLLPDVNIAYAHGRMTQRELENIMTDV 333

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +    +LI TT+IE GID+ + + +I+E+A+ FGL+QL+QLRGRVGR    +   L+Y 
Sbjct: 334 IDRKYDVLITTTIIETGIDISNVNTLIVEDADKFGLSQLYQLRGRVGRSSREAYAYLMYK 393

Query: 598 P--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           P   L++NS  RLS +KN      GF IA +DL  R  G++LG +Q G
Sbjct: 394 PFKSLTENSEKRLSAIKNFTTLGSGFKIAMQDLSIRGAGDVLGGRQHG 441


>gi|323490992|ref|ZP_08096186.1| transcription-repair coupling factor [Planococcus donghaensis
           MPA1U2]
 gi|323395348|gb|EGA88200.1| transcription-repair coupling factor [Planococcus donghaensis
           MPA1U2]
          Length = 1177

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/396 (33%), Positives = 216/396 (54%), Gaps = 17/396 (4%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   + E  + ++     P+  T  Q  +I ++ +DM  +  M R++ GDVG GKT VA+
Sbjct: 603 GFAFSEEQDMQRQFEAEFPYEETTDQLRSINEVKRDMENERPMDRLICGDVGYGKTEVAI 662

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV  G Q   + P  ILAQQH+E + +  +   I V +++    +  + + ++ +
Sbjct: 663 RAAFKAVLDGKQVAFLVPTTILAQQHFETMSERFKEYPITVGLMSRFRSKKQQTETVKGL 722

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +G   I++GTH +    + Y  L L+I+DE+ RFGV  + K+ Q  T   VL +TATPI
Sbjct: 723 KNGSVDIVVGTHRILSKDMHYKDLGLLIIDEEQRFGVTHKEKIKQMKTNVDVLTLTATPI 782

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489
           PRTL ++ +G  D+S I   PA R P+++ ++  N   + E IER    ++ G + +++ 
Sbjct: 783 PRTLHMSMIGVRDLSVIETPPANRFPVQSYVMEHNGALVREAIER---EMARGGQVFYLY 839

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +++     +    VE    L     + +   HG+MS+ + ESV+ SF +G   +L+ TT
Sbjct: 840 NRVD-----DMTRKVEEIQQLVPE--ARVGYAHGQMSETELESVILSFLDGDYDVLVTTT 892

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
           +IE GID+ + + +I+ NA+  GL+QL+QLRGRVGR   ++    +Y     L+  +  R
Sbjct: 893 IIETGIDIPNVNTLIVYNADRMGLSQLYQLRGRVGRSSRVAYAYFMYQRDKVLTDVAEKR 952

Query: 608 LSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
           L  +K  TE   GF IA  DL  R  G +LG +Q G
Sbjct: 953 LMAIKEFTELGSGFKIAMRDLTIRGAGNLLGSQQHG 988


>gi|187928984|ref|YP_001899471.1| transcription-repair coupling factor [Ralstonia pickettii 12J]
 gi|187725874|gb|ACD27039.1| transcription-repair coupling factor [Ralstonia pickettii 12J]
          Length = 1143

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 220/431 (51%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R+        A ++  L  R+  ++    P+  E         +  F  T  Q 
Sbjct: 550 QWEKAKRKAAQQIRDTAAELLNLYARRALRQGFAFPLTPEDYAT--FAESFGFEETPDQA 607

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  I+AP  +LA+QHY
Sbjct: 608 AAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHY 667

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +     +  + +  I+    +     A+E I  G   I+IGTH L    +++ +L LV
Sbjct: 668 QTLVDRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVKFDRLGLV 727

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 728 IIDEEHRFGVRQKETLKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 787

Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           KT    + R ++ + R  ++  L  G + Y++  ++E  E K +    ++          
Sbjct: 788 KTF---LRREEDGVLREAILRELKRGGQVYFLHNEVETIENKRAKLEELIPE-------- 836

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + + + HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLA
Sbjct: 837 -ARVVVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLA 895

Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QLHQLRGRVGR    +   LL H    L+K +  RL  ++  E+   GF +A  DL+ R 
Sbjct: 896 QLHQLRGRVGRSHHQAYAYLLVHDVDGLTKQAQRRLEAIQQMEELGAGFYLAMHDLEIRG 955

Query: 630 EGEILGIKQSG 640
            GE+LG KQSG
Sbjct: 956 AGEVLGDKQSG 966


>gi|241663171|ref|YP_002981531.1| transcription-repair coupling factor [Ralstonia pickettii 12D]
 gi|240865198|gb|ACS62859.1| transcription-repair coupling factor [Ralstonia pickettii 12D]
          Length = 1143

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 220/431 (51%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R+        A ++  L  R+  ++    P+  E         +  F  T  Q 
Sbjct: 550 QWEKAKRKAAQQIRDTAAELLNLYARRALRQGFAFPLTPEDYAT--FAESFGFEETPDQA 607

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  I+AP  +LA+QHY
Sbjct: 608 AAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHY 667

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +     +  + +  I+    +     A+E I  G   I+IGTH L    +++ +L LV
Sbjct: 668 QTLVDRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVKFDRLGLV 727

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 728 IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 787

Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           KT    + R ++ + R  ++  L  G + Y++  ++E  E K +    ++          
Sbjct: 788 KTF---LRREEDGVLREAILRELKRGGQVYFLHNEVETIENKRAKLEELIPE-------- 836

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + + + HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLA
Sbjct: 837 -ARVVVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLA 895

Query: 575 QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QLHQLRGRVGR    +   LL H    L+K +  RL  ++  E+   GF +A  DL+ R 
Sbjct: 896 QLHQLRGRVGRSHHQAYAYLLVHDVDGLTKQAQRRLEAIQQMEELGAGFYLAMHDLEIRG 955

Query: 630 EGEILGIKQSG 640
            GE+LG KQSG
Sbjct: 956 AGEVLGDKQSG 966


>gi|56479184|ref|YP_160773.1| transcription-repair coupling protein Mfd [Aromatoleum aromaticum
           EbN1]
 gi|56315227|emb|CAI09872.1| Transcription-repair coupling protein Mfd [Aromatoleum aromaticum
           EbN1]
          Length = 1157

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 141/377 (37%), Positives = 204/377 (54%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AI  ++ DM     M R++ GDVG GKT VAL A   AV  G Q V++ P 
Sbjct: 613 FETTPDQQAAIDAVVTDMKSGQPMDRLVCGDVGFGKTEVALRAAFVAVADGKQVVVLTPT 672

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QHY+       +  I +  ++       +  +L+++A G+  IIIGTH L Q  +
Sbjct: 673 TLLAEQHYQTFSDRFADFAIRIAELSRFKSAKEQTDSLKQLAEGKVDIIIGTHRLLQKDV 732

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++ +L LVI+DE+HRFGV+Q+  L    +   +L +TATPIPRTL L   G  + S I  
Sbjct: 733 KFKRLGLVIIDEEHRFGVRQKEMLKTLRSEIDILTLTATPIPRTLGLALEGLREFSVIAT 792

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P+ R  IKT    ++R  + I R  V+     G + Y++  +++        +V +   
Sbjct: 793 APSRRLAIKTF---VHRHSKGIIREAVLREFKRGGQVYFLHNEVD-----TIDNVRDELA 844

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L     + I I HG++ + + E VM +F      LL+ TT+IE GID+  A+ III  A
Sbjct: 845 ELLPE--ARIVIGHGQLPERELERVMRTFTQQRANLLLCTTIIETGIDIPTANTIIINRA 902

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLAQLHQLRGRVGR    +   LL   H   S  +  RL  +   ED   GF +A  
Sbjct: 903 DRFGLAQLHQLRGRVGRSHHQAYAYLLTDAHAKPSALAQKRLEAITMMEDLGSGFYLAMH 962

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  GE+LG  QSG
Sbjct: 963 DLEIRGAGEVLGENQSG 979


>gi|312144318|ref|YP_003995764.1| transcription-repair coupling factor [Halanaerobium sp.
           'sapolanicus']
 gi|311904969|gb|ADQ15410.1| transcription-repair coupling factor [Halanaerobium sp.
           'sapolanicus']
          Length = 1164

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 135/378 (35%), Positives = 206/378 (54%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q+ AIK++  DM  +  M R+L GDVG GKT VA+ A   A   G Q  ++ P
Sbjct: 618 PFHETPDQQKAIKEVKSDMESEQPMDRLLCGDVGYGKTEVAIRAAFKAALDGKQTAVLVP 677

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQH+   +   ++  I + +++    +A +RK L+ +  G+  I+IGTH L    
Sbjct: 678 TTILAQQHFNTFEDRIEDFPIRISMLSRFKTKAEQRKTLKELIKGEVDIVIGTHRLLSKD 737

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+I+DE+ RFGV  + KL        VL +TATPIPRTL +  +G  D+S I 
Sbjct: 738 VIFDDLGLLIIDEEQRFGVTHKEKLKDIKRNVDVLTLTATPIPRTLHMALVGVRDMSLIE 797

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
             P  R PI+T I   N  + +   ++  L+   + Y++  ++E  EK     + +V   
Sbjct: 798 TPPENRYPIRTFIKEKNH-ELIAGAVRRELAREGQIYFVHNRVEDIEKIAGKLQKIVPE- 855

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IA+ HG+M +   E +M +F +    +L+ TT+IE G+D+ + + III +
Sbjct: 856 --------AKIAVAHGQMKEKRLEKIMYNFYHHKFDILVCTTIIETGLDIPNVNTIIINH 907

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAE 622
           A+  GL+QL+QLRGRVGR   I+   LLY     L++ +  RL  +K       GF IA 
Sbjct: 908 ADKMGLSQLYQLRGRVGRTNRIAYAYLLYKRDRILAEVAEKRLEAIKEFSSLGSGFKIAM 967

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 968 RDLEIRGAGNLLGPEQSG 985


>gi|326202452|ref|ZP_08192321.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM
           2782]
 gi|325987570|gb|EGD48397.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM
           2782]
          Length = 1174

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 130/378 (34%), Positives = 214/378 (56%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q   I +I +DM  +  M R+L GDVG GKT VA+ A+  +V  G Q   +AP
Sbjct: 625 PYQETDDQLKCIDEIKKDMESERLMDRLLCGDVGYGKTEVAIRAVFKSVMDGKQVAYLAP 684

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQ YE  KK   +  + V++++     A ++K ++ +  G   I+IGTH L Q  
Sbjct: 685 TTILAQQLYENFKKRMSDFPVTVDVMSRFRTPAEQKKIVKSVKAGNTDILIGTHRLLQKD 744

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L++VDE+ RFGV  + KL        VL +TATPIPRTL ++ +G  DIS + 
Sbjct: 745 IEFKDLGLLVVDEEQRFGVTHKEKLKTLKPNVDVLTLTATPIPRTLHMSLVGIRDISVLE 804

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
           + P  R P++T ++  N ++ + + +   ++   + +++  ++   + K    R+++   
Sbjct: 805 DPPEERYPVQTYVMEYN-MELIRDGIIREMARNGQVFYMYNRVRGIDLKAQEIRTMIPE- 862

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + +A+ HG+M++ + E VM  F NG   +L+ TT+IE G+D+ + + I++E+
Sbjct: 863 --------ARVAVAHGQMNEKELEDVMYGFINGEYDVLVCTTIIESGLDMPNVNTIVVED 914

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+Q+RGRVGR   ++   + Y     LS+ +  RL  +K  TE   GF IA 
Sbjct: 915 ADRMGLSQLYQIRGRVGRSNRLAYAYITYKKDKVLSEVAEKRLQAIKEFTEFGSGFRIAM 974

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +Q G
Sbjct: 975 RDLEIRGAGNLLGPEQHG 992


>gi|167758784|ref|ZP_02430911.1| hypothetical protein CLOSCI_01126 [Clostridium scindens ATCC 35704]
 gi|167663524|gb|EDS07654.1| hypothetical protein CLOSCI_01126 [Clostridium scindens ATCC 35704]
          Length = 1114

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 205/370 (55%), Gaps = 21/370 (5%)

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+ + QDM     M R++ GDVG GKT +A+ A   AV+   Q V + P  ILAQQHY 
Sbjct: 572 AIEAVKQDMMSHKIMDRLICGDVGYGKTEIAIRAAFKAVQEDKQVVYLVPTTILAQQHYN 631

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + V+++      A ++K +E    G   I+IGTH +  D +++  L L+I
Sbjct: 632 TFAQRMKDFPVRVDLMCRFRTPAQQKKTIEDTKKGLVDIVIGTHRVLSDDLKFKDLGLLI 691

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGVQ + K+ +      VL +TATPIPRTL ++ +G  D+S + E P  R PI+
Sbjct: 692 IDEEQRFGVQHKEKIKKLKENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPNDRMPIQ 751

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKA--YWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           T ++  N   + E IER       G++   Y++  ++E+  E     +      L    T
Sbjct: 752 TYVMEYNDEMVREAIER-----ESGRQGQVYYVYNRVEDIAE-----ITGHIQKLVPDVT 801

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
              A  HG+M +   E +M  F NG   +L++TT+IE G+D+ + + +II +A+H GL+Q
Sbjct: 802 VEYA--HGQMKEHQLERIMYDFINGEIDVLVSTTIIETGLDISNVNTMIIHDADHLGLSQ 859

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           L+QLRGRVGR   ++   LLY     L + +  RL+ ++   D   GF IA  DL+ R  
Sbjct: 860 LYQLRGRVGRSNRMAYAFLLYRRDKLLREVAEKRLAAIREFTDLGSGFKIAMRDLEIRGA 919

Query: 631 GEILGIKQSG 640
           G +LG +Q G
Sbjct: 920 GNLLGAEQHG 929


>gi|34496601|ref|NP_900816.1| transcription-repair coupling factor [Chromobacterium violaceum
           ATCC 12472]
 gi|34102455|gb|AAQ58821.1| transcription-repair coupling factor [Chromobacterium violaceum
           ATCC 12472]
          Length = 1130

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 131/375 (34%), Positives = 205/375 (54%), Gaps = 15/375 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q +AI+ ++QDM     M R++ GDVG GKT VAL A   AV  G Q  ++ P 
Sbjct: 588 FEETPDQATAIEAVIQDMCSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLVPT 647

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH++       +  + +  ++        + AL  +A G   I+IGTH L Q  +
Sbjct: 648 TLLAEQHFQNFSDRFADWPVRIAELSRFRSGKETKAALAGLADGGVDIVIGTHKLVQPDV 707

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L LVI+DE+HRFGV+Q+ +L +      VL +TATPIPRTL +   G  D S I  
Sbjct: 708 AFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDVLTLTATPIPRTLSMALEGLRDFSAIAT 767

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P+ R  +KT + P++   + E + R    L  G + +++  +++        ++ E+  
Sbjct: 768 APSRRLAVKTFVSPLSNGVVREAVLR---ELKRGGQVFFLHNEVD-----TIENMREKLA 819

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L     + I + HG++ + + E VM  F      LL+ +T+IE GID+ +A+ I+I  A
Sbjct: 820 ELIPE--ARIGVAHGQLRERELEQVMRDFLQQRFNLLLCSTIIETGIDIPNANTILINRA 877

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDL 625
           + FGLAQLHQLRGRVGR    +   LL    +++++  RL  ++ + +   GF +A  DL
Sbjct: 878 DKFGLAQLHQLRGRVGRSHHQAYAYLLTPDGMTRDAQKRLEAIQLSGELGAGFYLAMHDL 937

Query: 626 KQRKEGEILGIKQSG 640
           + R  GE+LG  QSG
Sbjct: 938 EIRGAGEVLGEGQSG 952


>gi|256839562|ref|ZP_05545071.1| transcription-repair coupling factor [Parabacteroides sp. D13]
 gi|256738492|gb|EEU51817.1| transcription-repair coupling factor [Parabacteroides sp. D13]
          Length = 1145

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 136/407 (33%), Positives = 216/407 (53%), Gaps = 13/407 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+L+  + K+E G     +  +  ++  +  +  T  Q  A  ++  DM     M R++ 
Sbjct: 548 LILLYSKRKQETGFAYTPDSFMQHELEASFIYEDTPDQMKATAEVKADMESTRPMDRLIC 607

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+   +  ++    ++ I+   
Sbjct: 608 GDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQTFCERLKDFPCKIDYISRAR 667

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G+ +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 668 TAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLIIDEEQKFGVSVKEKLRQLKV 727

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L MTATPIPRTL  + +G  D+S IT  P  R P++T +   N  D + E +   +
Sbjct: 728 NVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEVERFNP-DIIREAINFEM 786

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S   + ++I  +I+   E    ++V R     E   + +A+ HG+M     E ++  F N
Sbjct: 787 SRNGQVFFINNRIQNIYE--MEALVRR-----EVPDARVAVGHGQMEPEKLEKIILDFVN 839

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
               +LIAT+++E GIDV +A+ III NA+ FGL+ LHQLRGRVGR    + C LL  P 
Sbjct: 840 YEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPL 899

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             L++ +  RL  ++N  +   G  IA +DL  R  G +LG +QSG 
Sbjct: 900 TSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNMLGAEQSGF 946


>gi|198275717|ref|ZP_03208248.1| hypothetical protein BACPLE_01892 [Bacteroides plebeius DSM 17135]
 gi|198271346|gb|EDY95616.1| hypothetical protein BACPLE_01892 [Bacteroides plebeius DSM 17135]
          Length = 1122

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 139/412 (33%), Positives = 221/412 (53%), Gaps = 23/412 (5%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q K+E G   + +  +  ++  +  +  T  Q  A +++  DM     M R++ 
Sbjct: 525 LIKLYSQRKQEKGFKYSPDSFLQHELEASFLYEDTPDQLKATQEVKADMESDKPMDRLVC 584

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  KK  ++    VE ++   
Sbjct: 585 GDVGFGKTEVAIRAAFKAVTDNKQVAVLVPTTVLAYQHFQTFKKRLEDMPCKVEYLSRAR 644

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                 + L+ +A G+ +I+IGTH +   S+++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 645 TAKDTSRILKELADGKINILIGTHKIIGKSVKFKDLGLLIIDEEQKFGVSVKEKLRQLKV 704

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L +TATPIPRTL  + +G  D+S I   P  R PI+T +   N  +E+I E +   
Sbjct: 705 NVDTLTLTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFN--EEIISEAINFE 762

Query: 479 LSEGKKAYWICPQIE---EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +S   + +++  +I+   E K    R++ +            + I HG+M   + E ++ 
Sbjct: 763 MSRNGQVFFVNNRIQNLVELKAMILRNIPD----------CRVCIGHGQMQPEELEKIIF 812

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGRG + + C LL
Sbjct: 813 DFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRGNKKAFCYLL 872

Query: 596 YHPPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             PPLS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 873 -APPLSSLTPEARRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 923


>gi|163815685|ref|ZP_02207057.1| hypothetical protein COPEUT_01865 [Coprococcus eutactus ATCC 27759]
 gi|158448990|gb|EDP25985.1| hypothetical protein COPEUT_01865 [Coprococcus eutactus ATCC 27759]
          Length = 1186

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/429 (30%), Positives = 222/429 (51%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW         + + +A  +  L   +Q K+  G   + + +  ++     P+  T  Q 
Sbjct: 579 EWQKVRNRVKGHVDEVAEHLVKLYAERQSKE--GHAYSPDSEWQKEFEETFPYKETDDQL 636

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI D+  DM     M R++ GDVG GKT VA+ A   AV    Q   + P  ILA+QHY
Sbjct: 637 RAIADVKADMESSRIMDRLVCGDVGFGKTEVAIRAAFKAVGDSRQVAYLVPTTILAEQHY 696

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E   +  ++  +++ ++     Q   +  L  +  G+  I+IGTH L    +++  L L+
Sbjct: 697 ETFTERMKDYPVVIRLLCRFCTQKEIKNTLRELKEGKVDIVIGTHRLLSKDVEFKNLGLL 756

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + K+ +  T   VL +TATPIPRTL ++ +G  D+S + E P  R+PI
Sbjct: 757 IIDEEQRFGVNHKEKIKEMKTNVDVLTLTATPIPRTLHMSLVGIRDMSLLEEAPVDRRPI 816

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TS 516
           +T ++  ++ +   E +   L+   + Y++  ++ +         +E+F +  +     +
Sbjct: 817 QTYVMEYDK-ELAREAIARELARQGQVYYVYNRVND---------IEQFTAEVQKLVPNA 866

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++   HG+M     E +M  F      +L+ TT+IE G+D+ +A+ III +A +FGLAQL
Sbjct: 867 NVEFAHGQMDGRTLEDIMYRFNKKEIDVLVCTTIIETGLDIPNANTIIIHDANNFGLAQL 926

Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QLRGRVGR +  +   + Y  +  +S+ +  RL  +K   D   G  I++ DL  R  G
Sbjct: 927 YQLRGRVGRSDRSAFAFMFYRRNKVISEVAEKRLRAIKEYTDLGSGVKISKADLNIRGAG 986

Query: 632 EILGIKQSG 640
            +LG  QSG
Sbjct: 987 SVLGESQSG 995


>gi|297171405|gb|ADI22408.1| transcription-repair coupling factor (superfamily II helicase)
           [uncultured Planctomycetales bacterium HF0500_02G17]
          Length = 1114

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 203/378 (53%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q +A+ +I +DMS    M R++ GDVG GKT VA+ A   A E G Q  ++ P
Sbjct: 561 PYDETEDQLAALAEIKKDMSSDRPMDRLICGDVGFGKTEVAIRAAFKACEFGRQVAVLVP 620

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH    +    +    V  ++    Q      L  +  G+  ++IGTH L    
Sbjct: 621 TTVLAEQHERTFRSRFADYPFRVASLSRFKSQKELNATLAALRRGEIDVVIGTHRLLSKD 680

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L LV+VDE+ RFGV+ + +L +      VL ++ATPIPRTL ++ LG  DIS +T
Sbjct: 681 VKFADLGLVVVDEEQRFGVEHKERLLRLRLTVDVLTLSATPIPRTLHMSMLGLRDISSLT 740

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R+ I T +IP N  RI + I R    LS   + Y++  ++      N +S+ +  
Sbjct: 741 TPPLERRAIVTEVIPYNGRRIAQAIAR---ELSRNGQVYFVHNRVH-----NIKSIADNV 792

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L     + I I HG+M   + E VM  F      +L++TT+IE GID+  A+ +II +
Sbjct: 793 RQLAPD--AKIVIGHGQMPPNELEEVMLKFMRREADVLVSTTIIESGIDISSANTMIIND 850

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAE 622
           A+ FGLA LHQLRGRVGR    + C LL     P+ + +  RL  ++       GF IA 
Sbjct: 851 ADRFGLADLHQLRGRVGRSSHRAYCYLLLPVDRPVREVAQKRLKAIEQYSMLGAGFKIAM 910

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G ILG +QSG
Sbjct: 911 RDLEIRGAGNILGAEQSG 928


>gi|302841163|ref|XP_002952127.1| hypothetical protein VOLCADRAFT_92718 [Volvox carteri f.
           nagariensis]
 gi|300262713|gb|EFJ46918.1| hypothetical protein VOLCADRAFT_92718 [Volvox carteri f.
           nagariensis]
          Length = 1059

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 144/405 (35%), Positives = 228/405 (56%), Gaps = 40/405 (9%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM--SQKNRMLRILQGDVGSGKTLVAL 311
           P++ +  +A  + + + F  T +Q  A+ ++L DM   + + M R+LQGDVGSGKT+VAL
Sbjct: 590 PVSADPLVAAAV-QALGFELTGAQRRAVGEVLGDMRPERGSTMYRLLQGDVGSGKTVVAL 648

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFI--------KKYTQNTQIIVE--IITGNMPQ 361
           +AM AA   G Q++++ P  +LAQQH+  +        K+  +   +  E  ++TG    
Sbjct: 649 LAMLAAASCGLQSLLVVPTTVLAQQHHRNLGALMDRLPKRVRRKAGLEGEPLLLTGEAKA 708

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ--KAT 419
             +R A + +A G   + +GTH L  +  +++ L L+++DE H+FGV Q  +L+      
Sbjct: 709 KEKRLAAQGLADGSILLAVGTHGLL-NLTEFHNLGLLVLDESHKFGVVQMERLSSLIAQR 767

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII------PINRIDEVIE 473
            PH+L M+ATPIPRTL     G +D+S++ E P GR P+ T ++      P    D V E
Sbjct: 768 PPHLLNMSATPIPRTLAAAMYGHMDVSRLDELPPGRTPVLTKLVQDDSDMPYRDPDAVRE 827

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDK 530
                      A W     EE      ++ V++   L   F        ++HGRM   +K
Sbjct: 828 ---------MDAMW-----EEVLREELKNAVDQATVLAARFEPLGVPTRLLHGRMKAEEK 873

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            + +++F+ G  +LL+ TTV+EVG+DV +A+++++E+AE FGLAQLHQLRGRVGRG    
Sbjct: 874 NAALEAFRGGDVRLLVCTTVVEVGVDVPEATVVVVEHAERFGLAQLHQLRGRVGRGGRRG 933

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
            C L   P   + +  RL ++++T DGF +AE DL+QR  G + G
Sbjct: 934 MCFLCV-PFGDRAARERLGIMEHTNDGFEVAEWDLEQRGMGHLFG 977


>gi|268608427|ref|ZP_06142154.1| transcription-repair coupling factor [Ruminococcus flavefaciens
           FD-1]
          Length = 1160

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 133/406 (32%), Positives = 215/406 (52%), Gaps = 13/406 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  + +K +G     + +I +      P+  T  Q  +I +I  DM +   M R+L 
Sbjct: 580 LIALYAKREKSVGFAFYPDDEIQRDFEERFPYVETDDQLQSISEIKADMERARPMERLLC 639

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VAL A    V AG Q  I+AP  +LA QHY+   +  ++  + VE+++   
Sbjct: 640 GDVGFGKTEVALRAAMKCVLAGKQCAILAPTTVLAWQHYQTALRRFEHFPVKVELLSRYR 699

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + + ++++  G+  I+IGTH + Q S+ +  L L I+DE+ RFGV  + K  +  T
Sbjct: 700 SPKQQEEIIKKLKQGRIDILIGTHKIIQKSVVFKDLGLAIIDEEQRFGVAHKEKFKESFT 759

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL+++ATPIPRTL +   G  D+S + E P  R P++T +I  N I  +++ +   L
Sbjct: 760 GVDVLMLSATPIPRTLNMAMSGIRDMSVLEEPPQDRYPVQTYVIEYN-IGTIVQAIVREL 818

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G + Y+I  ++E       ++   +   L     + IA  HG+MS+     + +    
Sbjct: 819 RRGGQVYYIHNRVE-----TIQACAAKLQQLLPE--ARIAYAHGQMSEDQMSDIWEQLVE 871

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +LI TT+IE G+DV + + +IIE+++ FGL+QL+QLRGRVGR          Y   
Sbjct: 872 HEIDILICTTIIETGVDVPNVNTLIIEDSDRFGLSQLYQLRGRVGRSNRRGYAYFTYQRD 931

Query: 600 --LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
             L++ +  RL+ ++       GF IA  DL+ R  G ILG +Q G
Sbjct: 932 KVLTEVATKRLNAMREFTQFGSGFRIALRDLEIRGAGSILGGRQHG 977


>gi|332878210|ref|ZP_08445938.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683822|gb|EGJ56691.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 1104

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/378 (34%), Positives = 207/378 (54%), Gaps = 17/378 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  A  ++  DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P 
Sbjct: 545 YEDTPDQSKATAEVKADMESAKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPT 604

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QHY+   +  ++  + ++ +        ++  LE +A GQ  I+IGTH +  + +
Sbjct: 605 TVLAFQHYQTFSQRMKDFPVRIDYLNRFRTAKEKKIILEELAKGQLDIVIGTHQIVGEKV 664

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           QY  L L+IVDE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S I  
Sbjct: 665 QYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLSVINT 724

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R PI + +IP +  +EVI + ++  +  G + +++  ++E  +E     +++R   
Sbjct: 725 PPPNRYPIDSQVIPFS--EEVIRDGIRYEIQRGGQVFFMHNRVENIQE--VAGMIQRLLP 780

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 + IAI HG+M     E  M +F  G   +L+ATT+IE G+DV +A+ I I NA 
Sbjct: 781 -----DARIAIGHGQMDGKKLEETMLAFMEGAYDVLVATTIIESGLDVPNANTIFINNAH 835

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNTED---GFLIAEE 623
           +FGL+ LHQ+RGRVGR  + + C  +  PPL   S ++  R+  +    D   G  IA +
Sbjct: 836 NFGLSDLHQMRGRVGRSNKKAFCYFI-TPPLIAMSDDARKRIEAIAQFSDLGSGLNIAMK 894

Query: 624 DLKQRKEGEILGIKQSGM 641
           DL+ R  G++LG +QSG 
Sbjct: 895 DLEIRGAGDLLGGEQSGF 912


>gi|28377424|ref|NP_784316.1| transcription-repair coupling factor [Lactobacillus plantarum
           WCFS1]
 gi|28270256|emb|CAD63157.1| transcription-repair coupling factor [Lactobacillus plantarum
           WCFS1]
          Length = 1175

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 140/429 (32%), Positives = 225/429 (52%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   R+  A  E +A ++  L  +++ +K    P   +         + P+  T  Q 
Sbjct: 568 EWTKAKRKVAAKIEDIADELVDLYAKREAEKGYAFP--PDDSYQDDFDNDFPYPETPDQI 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I  DM +   M R+L GDVG GKT VAL A   A+EAG Q   + P  ILAQQHY
Sbjct: 626 RSINEIKHDMERPKPMDRLLVGDVGYGKTEVALRAAFKAIEAGKQVAFLVPTTILAQQHY 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +    +   I V +++        ++ ++++  G+  I++GTH L    + +  L L+
Sbjct: 686 ETMLNRFEGYPINVGMLSRFRTTKEMKETVQQLKSGEIDIVVGTHRLLSKDVAFADLGLL 745

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L     +  VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746 IIDEEQRFGVKHKERLKALKASVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPI 805

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++  N   I E IER    +    + +++  ++      +   VV +   L     +
Sbjct: 806 QTYVMEQNFGVIKEGIER---EMQRNGQVFYLHNRVH-----DIDKVVAQIKDLVPD--A 855

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++A I G+M +   E ++  F  G   +L+ TT+IE G+D+ + + + +ENA+  GL+QL
Sbjct: 856 AVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVNTLFVENADRMGLSQL 915

Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++     Y  +  L++    RL  +K+ TE   GF IA  DL  R  G
Sbjct: 916 YQLRGRIGRSSRVAYAYFTYQQNKVLTEVGEKRLQAIKDFTELGSGFKIAMRDLSIRGAG 975

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 976 NLLGKQQHG 984


>gi|315644370|ref|ZP_07897510.1| transcription-repair coupling factor [Paenibacillus vortex V453]
 gi|315280247|gb|EFU43539.1| transcription-repair coupling factor [Paenibacillus vortex V453]
          Length = 1175

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 211/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI +I +DM Q   M R+L GDVG GKT VA+ A   +   G Q  ++ P
Sbjct: 610 PYDETPDQLRAITEIKKDMEQNRPMDRLLCGDVGYGKTEVAVRAAFKSAIEGKQVAVLVP 669

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE  ++   N  I +++++    +  + + ++++  G   I+IGTH L    
Sbjct: 670 TTILAQQHYETFRERFANYPINIQVLSRFRSRKEQNETIKKVKQGSVDILIGTHRLLSQD 729

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I +  L L+IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730 IVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIE 789

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T ++  ++  + E IER    L+ G + Y++  +++       + +  + 
Sbjct: 790 TPPENRFPVQTYVVEHSQTLVREAIER---ELARGGQVYYLYNRVQ-----GIQEMAAQI 841

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           + L     + + + HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +
Sbjct: 842 SMLVPE--ARVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHD 899

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+QLRGRVGR   I+     Y     L++ +  RL  +K  TE   GF IA 
Sbjct: 900 ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAM 959

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G +LG +Q G
Sbjct: 960 RDLSIRGAGNLLGAEQHG 977


>gi|254555607|ref|YP_003062024.1| transcription-repair coupling factor [Lactobacillus plantarum JDM1]
 gi|254044534|gb|ACT61327.1| transcription-repair coupling factor [Lactobacillus plantarum JDM1]
          Length = 1175

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 140/429 (32%), Positives = 225/429 (52%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   R+  A  E +A ++  L  +++ +K    P   +         + P+  T  Q 
Sbjct: 568 EWTKAKRKVAAKIEDIADELVDLYAKREAEKGYAFP--PDDSYQDDFDNDFPYPETPDQI 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I  DM +   M R+L GDVG GKT VAL A   A+EAG Q   + P  ILAQQHY
Sbjct: 626 RSINEIKHDMERPKPMDRLLVGDVGYGKTEVALRAAFKAIEAGKQVAFLVPTTILAQQHY 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +    +   I V +++        ++ ++++  G+  I++GTH L    + +  L L+
Sbjct: 686 ETMLNRFEGYPINVGMLSRFRTTKEMKETVQQLKSGEIDIVVGTHRLLSKDVAFADLGLL 745

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L     +  VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746 IIDEEQRFGVKHKERLKALKASVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPI 805

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++  N   I E IER    +    + +++  ++      +   VV +   L     +
Sbjct: 806 QTYVMEQNFGVIKEGIER---EMQRNGQVFYLHNRVH-----DIDKVVAQIKDLVPD--A 855

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++A I G+M +   E ++  F  G   +L+ TT+IE G+D+ + + + +ENA+  GL+QL
Sbjct: 856 AVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVNTLFVENADRMGLSQL 915

Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++     Y  +  L++    RL  +K+ TE   GF IA  DL  R  G
Sbjct: 916 YQLRGRIGRSSRVAYAYFTYQQNKVLTEVGEKRLQAIKDFTELGSGFKIAMRDLSIRGAG 975

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 976 NLLGKQQHG 984


>gi|306835701|ref|ZP_07468707.1| transcription-repair coupling factor [Corynebacterium accolens ATCC
            49726]
 gi|304568419|gb|EFM43978.1| transcription-repair coupling factor [Corynebacterium accolens ATCC
            49726]
          Length = 1213

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 133/429 (31%), Positives = 220/429 (51%), Gaps = 19/429 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G     +     ++  N PF  T+ Q 
Sbjct: 588  DWKNTKKKARAAVREIAGELVDLYAKRQAAP--GHQFAPDNPWQAEMEDNFPFVETEDQM 645

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  + +DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHY
Sbjct: 646  LAIDAVKEDMESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGTQVAVLVPTTLLAQQHY 705

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + + +++    +    +  + +A G   I++GTH L Q  + +  L L+
Sbjct: 706  DTFSERMAGFPVKMAVLSRFTSKKEATEIFKGLADGSIDIVVGTHRLLQTGVHWKNLGLI 765

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +     +  VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 766  VVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 825

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
             T +       +V   ++  L    + ++I  ++   EKK    R +V           +
Sbjct: 826  LTYVGAYED-KQVAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPE---------A 875

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             I + HG+M++   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QL
Sbjct: 876  RIVVAHGQMNEDVLEKTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 935

Query: 577  HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G
Sbjct: 936  HQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 995

Query: 632  EILGIKQSG 640
             +LG +QSG
Sbjct: 996  NVLGAQQSG 1004


>gi|308179637|ref|YP_003923765.1| transcription-repair coupling factor [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|308045128|gb|ADN97671.1| transcription-repair coupling factor [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 1175

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 140/429 (32%), Positives = 225/429 (52%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   R+  A  E +A ++  L  +++ +K    P   +         + P+  T  Q 
Sbjct: 568 EWTKAKRKVAAKIEDIADELVDLYAKREAEKGYAFP--PDDSYQDDFDNDFPYPETPDQI 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I  DM +   M R+L GDVG GKT VAL A   A+EAG Q   + P  ILAQQHY
Sbjct: 626 RSINEIKHDMERPKPMDRLLVGDVGYGKTEVALRAAFKAIEAGKQVAFLVPTTILAQQHY 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +    +   I V +++        ++ ++++  G+  I++GTH L    + +  L L+
Sbjct: 686 ETMLNRFEGYPINVGMLSRFRTTKEMKETVQQLKSGEIDIVVGTHRLLSKDVAFADLGLL 745

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L     +  VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746 IIDEEQRFGVKHKERLKALKASVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPI 805

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T ++  N   I E IER    +    + +++  ++      +   VV +   L     +
Sbjct: 806 QTYVMEQNFGVIKEGIER---EMQRNGQVFYLHNRVH-----DIDKVVAQIKDLVPD--A 855

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++A I G+M +   E ++  F  G   +L+ TT+IE G+D+ + + + +ENA+  GL+QL
Sbjct: 856 AVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVNTLFVENADRMGLSQL 915

Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++     Y  +  L++    RL  +K+ TE   GF IA  DL  R  G
Sbjct: 916 YQLRGRIGRSSRVAYAYFTYQQNKVLTEVGEKRLQAIKDFTELGSGFKIAMRDLSIRGAG 975

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 976 NLLGKQQHG 984


>gi|296448068|ref|ZP_06889971.1| transcription-repair coupling factor [Methylosinus trichosporium
           OB3b]
 gi|296254425|gb|EFH01549.1| transcription-repair coupling factor [Methylosinus trichosporium
           OB3b]
          Length = 1173

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 136/384 (35%), Positives = 210/384 (54%), Gaps = 27/384 (7%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T+ Q +AI+ +L D+S    M R++ GDVG GKT VAL A   A   G Q  ++ 
Sbjct: 620 FPYDETEDQAAAIEAVLDDLSSGRPMDRLVCGDVGFGKTEVALRAAFCAAINGRQVAVVV 679

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LA+QHY+          I V  ++     A  R A   IA G   I++GTHA+   
Sbjct: 680 PTTLLARQHYKTFSTRFSGLPIRVAQLSRMTTAADARLAKSGIADGTIDIVVGTHAVLGK 739

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           +I +  L LVI+DE+  FGV  + +L +     HVL ++ATPIPRTL L   G  ++S I
Sbjct: 740 TISFKDLGLVIIDEEQHFGVGHKERLKELRAEVHVLTLSATPIPRTLQLAMTGVRELSLI 799

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN--FRSV 503
              P  R  +++ + P    D +I R + +L E   G +A+++CP+IE+ +++    R V
Sbjct: 800 ATAPVDRLAVRSFVSP---FDPLIVR-EALLRERYRGGQAFFVCPRIEDLEDAAAFLREV 855

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V           +   + HG+M+  D E  M +F +G   +L++TT++E G+D+  A+ +
Sbjct: 856 VPE---------AKFVMAHGQMAAGDLEERMTAFYDGKYDILLSTTIVESGLDIPTANTL 906

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLSVLKNTED--- 616
           I+  A+ FGLAQL+QLRGRVGR +  +    L+  P +K     +  RL VL++ +    
Sbjct: 907 IVWRADMFGLAQLYQLRGRVGRSK--TRAYALFTTPANKTITPQAQKRLEVLQSLDTLGA 964

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF +A  DL  R  G +LG +QSG
Sbjct: 965 GFQLASHDLDIRGAGNLLGDEQSG 988


>gi|225568648|ref|ZP_03777673.1| hypothetical protein CLOHYLEM_04726 [Clostridium hylemonae DSM
           15053]
 gi|225162576|gb|EEG75195.1| hypothetical protein CLOHYLEM_04726 [Clostridium hylemonae DSM
           15053]
          Length = 1113

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 142/429 (33%), Positives = 232/429 (54%), Gaps = 19/429 (4%)

Query: 219 EWTSPARE-RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EWT   ++ R A  E+    +AL   R++   + G     +    Q+     PF  T+ Q
Sbjct: 513 EWTKTKKKVRGAVKEIARDLVALYAARQE---QEGYVYGADTVWQQEFEEMFPFEETEDQ 569

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI+ + +DM  +  M R++ GDVG GKT +A+ A   AV+   Q V + P  ILAQQH
Sbjct: 570 LLAIEAVKRDMQSRRIMDRLICGDVGYGKTEIAIRAAFKAVQEDKQVVYLVPTTILAQQH 629

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y    +  ++  + ++++      A ++K  +    G   I+IGTH +  + +++  L L
Sbjct: 630 YNTFVQRMRDFPVRIDLMCRFRTPAQQKKTAQDTKRGLVDIVIGTHRVLSNDMEFKNLGL 689

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGVQ + K+ +      VL +TATPIPRTL ++ +G  D+S + E P  R P
Sbjct: 690 LIIDEEQRFGVQHKEKIKKLKENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPNDRMP 749

Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           I+T ++  N  DE++ E ++   S   + Y++  ++E+  E     +  R   L      
Sbjct: 750 IQTYVMEYN--DEMVREAIERECSRQGQVYYVYNRVEDIAE-----ITARIQKLVPEV-- 800

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S+A  HG+M +   E +M  F NG   +L++TT+IE G+D+ + + +II +A+  GL+QL
Sbjct: 801 SVAFAHGQMKEHQLEKIMYDFINGEIDVLVSTTIIETGLDISNVNTMIIHDADRLGLSQL 860

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QLRGRVGR   ++   LLY     L + +  RL+ ++   D   GF IA  DL+ R  G
Sbjct: 861 YQLRGRVGRSNRMAYAFLLYRRDKMLKEVAEKRLAAIREFTDLGSGFKIAMRDLEIRGAG 920

Query: 632 EILGIKQSG 640
            +LG +Q G
Sbjct: 921 NLLGAQQHG 929


>gi|224026146|ref|ZP_03644512.1| hypothetical protein BACCOPRO_02902 [Bacteroides coprophilus DSM
           18228]
 gi|224019382|gb|EEF77380.1| hypothetical protein BACCOPRO_02902 [Bacteroides coprophilus DSM
           18228]
          Length = 845

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 139/409 (33%), Positives = 219/409 (53%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q K+E G   + +  +  ++  +  +  T  Q  A +D+  DM     M R++ 
Sbjct: 250 LIKLYSQRKQEKGFKYSPDSFLQHELEASFLYEDTPDQLKATQDVKADMESDRPMDRLVC 309

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+   K  +     V+ ++   
Sbjct: 310 GDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHYQTFSKRLEGMPCKVDYLSRAR 369

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                 + L+ +A+G  +I+IGTH +   S+++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 370 TAKDTSRILKELANGDINILIGTHKIIGKSVKFKDLGLLIIDEEQKFGVSVKEKLRQIKV 429

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I   P  R PI+T +   N  +E+I E +   
Sbjct: 430 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFN--EEIITEAINFE 487

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +S   + +++  +I+   E   ++++ER           + I HG+M   + E ++  F 
Sbjct: 488 MSRNGQVFFVNNRIQNLPE--LKAMIERNIP-----DCRVCIGHGQMQPEELEKIIFDFV 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  P
Sbjct: 541 NYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-AP 599

Query: 599 PLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PLS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 600 PLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 648


>gi|37523406|ref|NP_926783.1| transcription-repair coupling factor [Gloeobacter violaceus PCC
           7421]
 gi|35214410|dbj|BAC91778.1| transcription-repair coupling factor [Gloeobacter violaceus PCC
           7421]
          Length = 1154

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 131/406 (32%), Positives = 220/406 (54%), Gaps = 13/406 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  +  +E  IP   +    +++  + P+  T  Q  AI+++  DM  +  M R++ 
Sbjct: 576 LLDLYARRAQESRIPFPPDQPWQREMEESFPYPLTPDQARAIQEVKIDMESERPMDRLVC 635

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   A+ +G Q  ++ P  +LA QHY   K+      I + ++    
Sbjct: 636 GDVGFGKTEVAIRAAFKALTSGVQCAVLVPTTVLASQHYHTFKERFAPYPISIGLLNRFR 695

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             + ++  L R+A G+  ++IGTH L    +++  L L+++DE+ RFGV Q+ K+    T
Sbjct: 696 TASEKKDLLARLATGELDLVIGTHQLLGAGVRFQNLGLLVIDEEQRFGVAQKEKIKTLKT 755

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL +TATPIPRTL ++  G  ++S IT  P  R+PIKT + P +  + V   +   L
Sbjct: 756 QVDVLTLTATPIPRTLYMSLSGVREMSLITTPPPSRRPIKTHLAPYD-PEHVRTAILQEL 814

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G + +++  +IE     + + V  R  ++    T+ + + HG+M + + ES M +F  
Sbjct: 815 GRGGQIFYVYNRIE-----DIQDVAARLQAMIP--TARVCVGHGQMEEGELESTMLAFSG 867

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--H 597
           G   +L+ TT+IE G+D+   + I++ENA  FGL+QL+QLRGRVGR    +   + Y   
Sbjct: 868 GEFDILVCTTIIESGLDIPRVNTILVENAHQFGLSQLYQLRGRVGRSGVQAHAWMFYKQE 927

Query: 598 PPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
             L+  +  RL  ++       G+ +A  D++ R  G +LG +QSG
Sbjct: 928 EALTDEARKRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQSG 973


>gi|289664638|ref|ZP_06486219.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 1154

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++
Sbjct: 604 GFPFEETPDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 663

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QHY   +    +  I VE+++        +  LE++A G   +IIGTH L Q
Sbjct: 664 VPTTLLAEQHYRNFRDRFADYPIKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 723

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S 
Sbjct: 724 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 783

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R  ++T I   +   + E  +R    LS G + Y++   +E        S+V 
Sbjct: 784 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 832

Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               L E    + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ II
Sbjct: 833 MQRDLSELVPEARIGIAHGQMPERELEQVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 892

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
           I  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF 
Sbjct: 893 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 952

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 953 LATHDLEIRGAGELLGEDQSG 973


>gi|289579379|ref|YP_003478006.1| transcription-repair coupling factor [Thermoanaerobacter italicus
           Ab9]
 gi|289529092|gb|ADD03444.1| transcription-repair coupling factor [Thermoanaerobacter italicus
           Ab9]
          Length = 1163

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 149/461 (32%), Positives = 236/461 (51%), Gaps = 34/461 (7%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFK 248
           DL+QK   P+         NP K       EW    R+     E LA  +  L  ++Q  
Sbjct: 551 DLVQKYVGPT--------DNPPKLNKLGGSEWLKAKRKAKKAVEDLAKDLIQLYAKRQIA 602

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  G   + +    ++     P+  T+ Q   IK+I +DM +   M R+L GDVG GKT 
Sbjct: 603 K--GHAFSPDTPWQREFEEQFPYEETEDQLRCIKEIKEDMEKDKPMDRLLCGDVGYGKTE 660

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL A   AV  G Q   + P  ILA QHY    +  +   + +E+++       + + +
Sbjct: 661 VALRAAFKAVADGKQVAFLCPTTILAYQHYTNFMERFKEFPVKIEMLSRFRTPKEQAQII 720

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           + +A G   II+GTH L Q+ +++  L L+I+DE+ RFGV  + K+ +      VL ++A
Sbjct: 721 KGLAEGTIDIIVGTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSA 780

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAY 486
           TPIPRTL ++ +G  D+S +   P  R P++T ++  N   I + I R    +  G + Y
Sbjct: 781 TPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILR---EIGRGGQVY 837

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           ++  ++         + +E+  SL +       +A+ HG+M +   E VM  F NG   +
Sbjct: 838 FVYNRV---------NGIEKMASLVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDV 888

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSK 602
           L++TT+IE G+D+ + + II+ +A+  GL+QL+QLRGRVGR   ++     Y     LS+
Sbjct: 889 LVSTTIIETGLDIPNVNTIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSE 948

Query: 603 NSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
            +  RL  +K  TE   GF IA  DL+ R  G +LG +Q G
Sbjct: 949 VAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHG 989


>gi|157413397|ref|YP_001484263.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9215]
 gi|157387972|gb|ABV50677.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9215]
          Length = 1169

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/426 (31%), Positives = 233/426 (54%), Gaps = 20/426 (4%)

Query: 258  EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +G    ++  + P+ PT  Q +A+++I  DM     M R++ GDVG GKT VA+ A+  A
Sbjct: 599  DGPWQDELEESFPYQPTPDQITAVEEIKSDMESDKPMDRLVCGDVGFGKTEVAVRAIFKA 658

Query: 318  VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
            + +G Q +++AP  ILAQQH+  I        I V ++        R++    + + +  
Sbjct: 659  ITSGKQVILLAPTTILAQQHWRTINNRFSPYPIKVSLLNRFKTVNERKEIYAGLKNNKID 718

Query: 378  IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +++ TH +    I+   L L+++DE+ RFGV+Q+ K+ +  T   VL ++ATPIPRTL +
Sbjct: 719  LVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYM 778

Query: 438  TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +  G   +S +   P  R+ IKT +  I+ +D +   +   L  G + +++ P+I +   
Sbjct: 779  SLSGLRQMSLLNTPPPSRRSIKTYLSEID-MDVIRTAINQELDRGGQIFYVLPRISD--- 834

Query: 498  SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                 + +  N L   F S    + HG+M++ D E+ M +F NG   L+I TT+IE G+D
Sbjct: 835  -----IDQAVNKLKIMFPSLKFIVAHGQMNETDLENAMIAFNNGEVDLMICTTIIESGLD 889

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVLKN 613
            +   + IIIE++  FGL+QL+QLRGRVGR   + +   L++P ++K    +  RL  +K+
Sbjct: 890  IPKVNTIIIEDSHKFGLSQLYQLRGRVGRS-GVQAHAWLFYPNINKINDAAKQRLKAIKD 948

Query: 614  TED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHIL 667
              +   G+ +A +D++ R  G +LG +QSG      + +    LH+++ EI+ ++   + 
Sbjct: 949  FSELGSGYQLAMKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEVN 1008

Query: 668  TQDPDL 673
                DL
Sbjct: 1009 DTQIDL 1014


>gi|219128770|ref|XP_002184578.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404028|gb|EEC43977.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 942

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 145/442 (32%), Positives = 240/442 (54%), Gaps = 27/442 (6%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQ--IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           + K   W S A++++  + L   Q  +AL   R+  +++   P +VE  + Q+  ++  +
Sbjct: 214 RVKGEAW-SKAKQKVEENTLQLAQDVLALYATRETLQRQPFDP-SVE-DVVQEFSKSFLY 270

Query: 272 SPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            PT  Q+   ++I  DM  ++R M R++ GDVG GKT VA+ A+  ++  G QA ++AP 
Sbjct: 271 EPTTDQKKCFEEIENDMVWRSRPMDRLICGDVGFGKTEVAIRALFRSIINGRQAALLAPT 330

Query: 331 GILAQQHYE-FIKKYTQNTQ--IIVEIITGNMPQAHR--RKALERIAHGQAHIIIGTHAL 385
           G+LA QHY+  +K+    T+  I + ++ G M +  +  R+    I  G+  +I+GTHAL
Sbjct: 331 GVLAAQHYKNIVKRMGPGTEYNINIALLRGGMGKQTKAGRELRGEIEGGKTQLIVGTHAL 390

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             + +++  L L++VDE+ RFGV+Q+ +L        VL ++ATPIPRTL ++  G  D 
Sbjct: 391 LSNEMKFKNLGLLVVDEEQRFGVKQKERLKLICDGIDVLTLSATPIPRTLQMSLSGIRDT 450

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I   P  RKP  T +   +  D V   +   L+ G + Y++ P+I         S+++
Sbjct: 451 STIRSPPPMRKPTVTHVQDFSE-DIVKTAISTELARGGQCYYVVPRI---------SMLD 500

Query: 506 RFNSLHEHFTSSIAII--HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
                 +     I II  HGRM     E  +  F  G   +L+ATTVIE G+D+   + I
Sbjct: 501 EAEQTIQSLFPGIRIIQAHGRMQRNGAEENVAEFAEGNYDVLLATTVIENGVDIPSVNTI 560

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPLSKNSYTRLSV---LKNTEDGFL 619
           +++N++ FG++ L+QLRGRVGR ++ +    LY    +++ +  RL     L     GF 
Sbjct: 561 VVQNSQAFGMSTLYQLRGRVGRSDKQAFAYFLYREESITEQAAMRLQAIGELSELGSGFD 620

Query: 620 IAEEDLKQRKEGEILGIKQSGM 641
           +A  DL+ R  G +LG +QSGM
Sbjct: 621 VANRDLEIRGAGSLLGTEQSGM 642


>gi|242279458|ref|YP_002991587.1| transcription-repair coupling factor [Desulfovibrio salexigens DSM
           2638]
 gi|242122352|gb|ACS80048.1| transcription-repair coupling factor [Desulfovibrio salexigens DSM
           2638]
          Length = 1149

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 128/377 (33%), Positives = 208/377 (55%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI+D+ +DM     M R++ GDVG GKT VAL A   AV  G Q V++ P 
Sbjct: 608 FEETPDQEKAIQDVFRDMESPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVVLLCPT 667

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QHY+   +  +   + V +++  +P++ +++ LE++A G+  I+IGTH +    +
Sbjct: 668 TVLAEQHYQTFVQRMEGFPVTVGMLSRFVPKSRQKRVLEQMAAGELDILIGTHRVLSKDV 727

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +   L L+I+DE+ RFGV+ + ++ +       L +TATPIPRTL L+  G   +S I  
Sbjct: 728 EAPNLGLLILDEEQRFGVRHKERVKEMRKNIDALTLTATPIPRTLQLSLSGVRSLSTIET 787

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  RKP++T +I  +   +  V+ R    L  G + +W+  +++         VVE   
Sbjct: 788 PPVDRKPVETALIERDEAMLASVVAR---ELERGGQVFWVHNRVQ-----GLERVVEFVK 839

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L     + I + HG+M++ + E  +  F +    +L+AT +IE G+D  +A+ +I++ A
Sbjct: 840 KLAPD--AKIGMAHGQMTEKNLEETIHKFWHKELDILVATAIIESGLDFPNANTLIVDQA 897

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEE 623
           + FGL QL+QLRGRVGR    +           LS+ +  R+ ++   +    GF +A E
Sbjct: 898 QMFGLGQLYQLRGRVGRSTRQAYAYFAVSSLDSLSEKAKRRMQIILQLDYLGAGFKVAME 957

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G ILG  QSG
Sbjct: 958 DLRLRGAGNILGEVQSG 974


>gi|71899709|ref|ZP_00681861.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
 gi|71730504|gb|EAO32583.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
          Length = 1195

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 229/431 (53%), Gaps = 23/431 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W+   R+       +A ++  +  R+Q +   G+ + ++  + +      PF  T  Q 
Sbjct: 599  QWSKAKRKAAEKVRDVAAELLEIQARRQARA--GLALRIDRTMYEPFAAGFPFEETPDQL 656

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+  L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++ P  +LA+QHY
Sbjct: 657  AAIETTLRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHY 716

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +    +  I VE+++        +  L++++ G   +I+GTH L Q  +++  L LV
Sbjct: 717  RNFRDRFADYPIRVEVLSRFKSTKEIKAELQKVSEGIMDVIVGTHRLLQPDVKFKDLGLV 776

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S I   P  R  +
Sbjct: 777  IVDEEQRFGVRQKEALKSLRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAV 836

Query: 459  KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHF 514
            +T I P +   + E  +R    L+ G + Y++   +E   + + +   +V          
Sbjct: 837  QTFITPWDNALLHEAFQR---ELARGGQLYFLHNDVESIGRMQRDLAQLVPE-------- 885

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ III  A+ FGLA
Sbjct: 886  -ARIGIAHGQMPERELERVMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLA 944

Query: 575  QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
            QLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF +A  DL+ R 
Sbjct: 945  QLHQLRGRVGRSHHRAYAYLVVPDRRSMTADAEKRLEAIASMDELGAGFTLATHDLEIRG 1004

Query: 630  EGEILGIKQSG 640
             GE+LG  QSG
Sbjct: 1005 AGELLGEDQSG 1015


>gi|83942375|ref|ZP_00954836.1| transcription-repair coupling factor [Sulfitobacter sp. EE-36]
 gi|83846468|gb|EAP84344.1| transcription-repair coupling factor [Sulfitobacter sp. EE-36]
          Length = 1162

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 138/413 (33%), Positives = 227/413 (54%), Gaps = 24/413 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P++ T  Q +AI D+L D++  N M R++ GDVG GKT VA+ A   A  +G Q  I+AP
Sbjct: 602  PYTETDDQLNAISDVLDDLTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVAP 661

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QHY+   +  +   + V  ++  +         + I  G   +++GTHAL   +
Sbjct: 662  TTLLARQHYKSFAERFRGFPLEVRQLSRFVSAKEATATRDGINRGTVDVVVGTHALLAKT 721

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +++  L L+I+DE+  FGV  + +L    T  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 722  VKFKNLGLLIIDEEQHFGVGHKERLKAMRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 781

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  E      +E 
Sbjct: 782  TPPVDRLAIRTY---VSEFDAVTLR-EALLREHYRGGQSFYVVPRITDLPE------IEA 831

Query: 507  FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            F  L E     +  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +I+
Sbjct: 832  F--LKEQLPELTYLVAHGQMAAGELDDRMNAFYDGKYDILLATTIVESGLDIPTANTMIV 889

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
              A+ FGLAQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +
Sbjct: 890  HRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRAKLTATAEKRLRVLGSLDTLGAGFTL 949

Query: 621  AEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQD 670
            A +DL  R  G +LG +QSG  +   F + Q  L D++ +I   + + ++  D
Sbjct: 950  ASQDLDIRGAGNLLGEEQSGQMRDVGFELYQSMLEDAIAKIKSGELEGVIDDD 1002


>gi|83953596|ref|ZP_00962317.1| transcription-repair coupling factor [Sulfitobacter sp. NAS-14.1]
 gi|83841541|gb|EAP80710.1| transcription-repair coupling factor [Sulfitobacter sp. NAS-14.1]
          Length = 1162

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 138/413 (33%), Positives = 227/413 (54%), Gaps = 24/413 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P++ T  Q +AI D+L D++  N M R++ GDVG GKT VA+ A   A  +G Q  I+AP
Sbjct: 602  PYTETDDQLNAISDVLDDLTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVAP 661

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QHY+   +  +   + V  ++  +         + I  G   +++GTHAL   +
Sbjct: 662  TTLLARQHYKSFAERFRGFPLEVRQLSRFVSAKEATATRDGINRGTVDVVVGTHALLAKT 721

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +++  L L+I+DE+  FGV  + +L    T  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 722  VKFKNLGLLIIDEEQHFGVGHKERLKAMRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 781

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  E      +E 
Sbjct: 782  TPPVDRLAIRTY---VSEFDAVTLR-EALLREHYRGGQSFYVVPRITDLPE------IEA 831

Query: 507  FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            F  L E     +  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +I+
Sbjct: 832  F--LKEQLPELTYLVAHGQMAAGELDDRMNAFYDGKYDILLATTIVESGLDIPTANTMIV 889

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
              A+ FGLAQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +
Sbjct: 890  HRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRAKLTATAEKRLRVLGSLDTLGAGFTL 949

Query: 621  AEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQD 670
            A +DL  R  G +LG +QSG  +   F + Q  L D++ +I   + + ++  D
Sbjct: 950  ASQDLDIRGAGNLLGEEQSGQMRDVGFELYQSMLEDAIAKIKSGELEGVIDDD 1002


>gi|295401980|ref|ZP_06811942.1| transcription-repair coupling factor [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109202|ref|YP_003987518.1| transcription-repair coupling factor [Geobacillus sp. Y4.1MC1]
 gi|294975982|gb|EFG51598.1| transcription-repair coupling factor [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214303|gb|ADP72907.1| transcription-repair coupling factor [Geobacillus sp. Y4.1MC1]
          Length = 1177

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 135/381 (35%), Positives = 207/381 (54%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I++I +DM     M R+L GDVG GKT VAL A   A+  G Q   + P
Sbjct: 621 PYQETEDQLRSIEEIKRDMESDKPMDRLLCGDVGYGKTEVALRAAFKAIMDGKQVAFLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE +++  Q   I V ++     +  + + ++ +  G   ++IGTH L    
Sbjct: 681 TTILAQQHYETVRERFQGFPITVGLLNRFRTRKQQAETIKGLKDGTIDMVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +Q+  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S I 
Sbjct: 741 VQFKDLGLLIIDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMIGVRDLSIIE 800

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNFRSVV 504
             P  R P++T ++      + E IER    L+   + +++   IE+   K E   + V 
Sbjct: 801 TPPENRFPVQTYVMEYTPELVREAIER---ELAREGQVFFLYNHIEDIDVKAEEISQLVP 857

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           E          + +  +HGRMS+ + ES M +F  G   +L+ TT+IE G+D+ + + +I
Sbjct: 858 E----------ARVTYVHGRMSETELESTMLAFLEGQYDVLVTTTIIETGVDIPNVNTLI 907

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619
           + +A+  GL+QL+QLRGRVGR   ++     Y     L++ +  RL  +K  TE   GF 
Sbjct: 908 VYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEAAEKRLQAIKEFTELGSGFK 967

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           IA  DL  R  G ILG +Q G
Sbjct: 968 IAMRDLSIRGAGNILGAEQHG 988


>gi|251794075|ref|YP_003008806.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2]
 gi|247541701|gb|ACS98719.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2]
          Length = 1175

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 210/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  AI++I +DM +   M R+L GDVG GKT VA+ A   A   G Q  I+ P
Sbjct: 609 PYDETRDQLRAIEEIKKDMQKPQPMDRLLCGDVGYGKTEVAVRAAFKAAIEGKQVAILVP 668

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE  ++        +++++    +  +   ++ +  G   ++IGTH L    
Sbjct: 669 TTILAQQHYETFRERFSGYPFNIQVLSRFRSRKEQNDTMKGLKAGTVDVVIGTHRLLSQD 728

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 729 VIFKDLGLLIVDEEQRFGVSHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIE 788

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T ++  +   + E IER    L+ G + Y++  +++         + E+ 
Sbjct: 789 TPPENRFPVQTYVVEYSTSLVREAIER---ELARGGQVYYLYNRVQ-----GIYQMAEQI 840

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           N+L     + +A+ HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +
Sbjct: 841 NALVPD--AKVAVGHGQMSEQELEKTILDFLDGESDVLVSTSIIETGVDIPNVNTLIVHD 898

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+QLRGRVGR   I+     Y     L++ +  RL  +K  TE   GF IA 
Sbjct: 899 ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAM 958

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G +LG +Q G
Sbjct: 959 RDLSIRGAGNLLGAEQHG 976


>gi|167753145|ref|ZP_02425272.1| hypothetical protein ALIPUT_01416 [Alistipes putredinis DSM 17216]
 gi|167659459|gb|EDS03589.1| hypothetical protein ALIPUT_01416 [Alistipes putredinis DSM 17216]
          Length = 1110

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 138/410 (33%), Positives = 218/410 (53%), Gaps = 18/410 (4%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           IAL   RK  K   G   + +  + Q++  +  +  T  Q++A + + +DM     M R+
Sbjct: 522 IALYAKRKASK---GFAFSPDTYLQQELEASFMWEDTPDQQTATQAVKRDMESNQPMDRL 578

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA+ A   A   G Q  ++ P  ILA QHY       ++  + VE +  
Sbjct: 579 ICGDVGFGKTEVAIRAAFKAATDGKQVAVLVPTTILALQHYRSFVHRLRDFPVKVEYLNR 638

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                   + L  +A G+  I+IGTH +    ++++ L L+I+DE+ +FGV  + KLTQ 
Sbjct: 639 TKSSKETSRILSELAEGRIDILIGTHKILGKQVKFHDLGLLIIDEEQKFGVAAKEKLTQM 698

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLK 476
           +     L +TATPIPRTL  + +G  D+S I+  P  R+PI T     +  +E+I + + 
Sbjct: 699 SVNVDTLTLTATPIPRTLQFSLMGSRDLSVISTPPPNRQPIITESHLFS--EEIIRDAVN 756

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             L  G + Y++  ++E+      + +V R         + + I HG+M     E ++  
Sbjct: 757 AELDRGGQVYFVHNRVEDLM--TLQGMVTRLCP-----RARVGIGHGKMPAEQLEKLIMD 809

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   +LI+TT++E GID+ +A+ II+ NA++FGL+ LHQLRGRVGRG +   C LL 
Sbjct: 810 FIYGEFDVLISTTIVENGIDIPNANTIIVNNAQNFGLSDLHQLRGRVGRGSQRGYCYLLS 869

Query: 597 --HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
                L+ ++  RL  ++   D   GF IA +DL  R  G +LG +QSG 
Sbjct: 870 PGDELLTPDARRRLRAIEEFSDLGSGFNIAMQDLDIRGAGNLLGAEQSGF 919


>gi|114800270|ref|YP_760685.1| transcription-repair coupling factor [Hyphomonas neptunium ATCC
           15444]
 gi|114740444|gb|ABI78569.1| transcription-repair coupling factor [Hyphomonas neptunium ATCC
           15444]
          Length = 1145

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 142/406 (34%), Positives = 223/406 (54%), Gaps = 31/406 (7%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q SAI+D+L D+S    M R++ GDVG GKT VAL A   A  +G Q  ++A
Sbjct: 558 FPYEETDDQLSAIEDVLGDLSSGKPMDRLVCGDVGFGKTEVALRAAFVAAMSGKQVAVIA 617

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIIT---GNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P  +LA+QH++  ++      + V  ++   G    A  R  L   A G   +++GTHA+
Sbjct: 618 PTTLLARQHFKTFEERFAGWPLKVRALSRFVGAREAAETRDGL---ASGSVDVVVGTHAV 674

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               + + +L L+IVDE+ RFGV+ + +L +  +  HVL ++ATPIPRTL +   G  D+
Sbjct: 675 LSKDMNFKRLGLMIVDEEQRFGVKHKERLKELKSDVHVLTLSATPIPRTLQMALTGIRDL 734

Query: 446 SKITEKPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEE-KKESNFRS 502
           S I   P  R  ++T I   + +   E + R K     G +A+++ P+I +  K  NF  
Sbjct: 735 SIIATPPVDRLSVRTYITEEDTVTLREALLREKY---RGGQAFFVAPRITDLDKLENF-- 789

Query: 503 VVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
                  L  H    S  + HG+M+  + E +M +F  G   +L++TT++E G+D+  A+
Sbjct: 790 -------LRTHVPEVSFIVAHGQMAAGELEDIMTAFYEGKYDVLLSTTIVESGLDIPRAN 842

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED-- 616
            +II  A+ FGLAQL+QLRGRVGR  ++ +      P    +++++  RL VL++ +   
Sbjct: 843 TLIIHRADMFGLAQLYQLRGRVGR-SKLRAYAYFTTPKDKVVTESAEKRLKVLQSLDSLG 901

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            GF +A  DL  R  G +LG +QSG  K +    EL+ S+LE A K
Sbjct: 902 AGFQLASHDLDMRGAGNLLGDQQSGQVKEVGV--ELYQSMLEDAVK 945


>gi|320161444|ref|YP_004174668.1| transcription-repair coupling factor [Anaerolinea thermophila
           UNI-1]
 gi|319995297|dbj|BAJ64068.1| transcription-repair coupling factor [Anaerolinea thermophila
           UNI-1]
          Length = 1129

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 148/437 (33%), Positives = 232/437 (53%), Gaps = 33/437 (7%)

Query: 219 EWTSPARERLAYDEL-LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW S  ++R+    L +A ++  L  ++Q  K  G   + +    +++  + P+  T+ Q
Sbjct: 528 EWAS-VKQRVRESVLEVAQELLELYAKRQVAK--GHAFSPDTMWQKELEASFPYIETEDQ 584

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI+ + +DM +   M R+L GDVG GKT VAL A   AV  G Q  ++ P  +LAQQH
Sbjct: 585 IKAIQAVKRDMERPRPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAMLVPTTVLAQQH 644

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           +E  ++      ++VE+++       + + L+++  G   IIIGTH L Q  + +  L L
Sbjct: 645 FETFRQRLAPFPVMVEMLSRFRTPKEQERILQQLREGTVDIIIGTHRLLQPDVAFKDLGL 704

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VI+DE+ RFGV  +    +  T   VL +TATPIPRTL +   G  DIS+I   PA R P
Sbjct: 705 VIIDEEQRFGVTHKEYFKKLRTEVDVLTLTATPIPRTLYMALTGVRDISQINTPPAERLP 764

Query: 458 IKTVIIPINRIDEVIERL--KVVLSEGKKAYWICPQIEEKKESNF-RSVVERFNSLHEHF 514
           I T I P +       RL  + +L E          IE   +  F  + V+  +++ +H 
Sbjct: 765 IITHIGPYS------PRLVRQAILRE----------IERGGQVFFVHNRVQTIHAMEQHL 808

Query: 515 T-----SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 + I I HG+M +     VM +F  G   +L+ T++IE G+D+ +A+ +I++  +
Sbjct: 809 QKLVPEARIGIAHGQMPEEALSRVMMAFTRGELDVLLCTSIIESGLDIPNANTLIVDRGD 868

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL-KNTE--DGFLIAEED 624
            FGLAQL+QLRGRVGRG + +      H     +     RL ++ +NT+   G+ IA  D
Sbjct: 869 TFGLAQLYQLRGRVGRGAQRAYAYFFRHRRKAPTPEGQERLEIIAENTQLGSGYSIAMRD 928

Query: 625 LKQRKEGEILGIKQSGM 641
           L+ R  GE+LG +Q GM
Sbjct: 929 LEMRGAGELLGTRQHGM 945


>gi|289667201|ref|ZP_06488276.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 1154

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++
Sbjct: 604 GFPFEETPDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 663

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QHY   +    +  I VE+++        +  LE++A G   +IIGTH L Q
Sbjct: 664 VPTTLLAEQHYRNFRDRFADYPIKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 723

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S 
Sbjct: 724 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 783

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R  ++T I   +   + E  +R    LS G + Y++   +E        S+V 
Sbjct: 784 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 832

Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               L E    + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ II
Sbjct: 833 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 892

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
           I  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF 
Sbjct: 893 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 952

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 953 LATHDLEIRGAGELLGEDQSG 973


>gi|51473776|ref|YP_067533.1| transcription-repair coupling factor [Rickettsia typhi str.
           Wilmington]
 gi|81856448|sp|Q9AKD5|MFD_RICTY RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|13235382|emb|CAC33732.1| Mfd protein [Rickettsia typhi]
 gi|51460088|gb|AAU04051.1| transcription-repair coupling factor (superfamily helicase II)
           [Rickettsia typhi str. Wilmington]
          Length = 1120

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 147/441 (33%), Positives = 239/441 (54%), Gaps = 39/441 (8%)

Query: 237 QIALLLMRKQFKKEIGI--PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           +I+L L++   K+++ I  PI  + +   K   N PF  T+ Q +AI DI +D++    M
Sbjct: 539 EISLHLIQIAAKRKLNISTPIEFDLEEYDKFCANFPFIETEDQLTAINDIRKDLTNGMLM 598

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346
            R++ GDVG GKT VA+ A+    ++      Q  ++ P  IL  QH+    E  K +  
Sbjct: 599 DRLICGDVGFGKTEVAMRAVFMVAKSLNEYLPQVAVVVPTTILCSQHFSRFIERFKGFGL 658

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           N + +  +++       R +    +A G+ +IIIGTH L   +I+++ L L+I+DE+  F
Sbjct: 659 NIKQLSSVVSSQEANIIRLE----LASGKINIIIGTHTLLHKNIKFFNLKLLIIDEEQHF 714

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV Q+  L     + HVL M+ATPIPRTL ++  G  ++S I   P  R  ++T ++P  
Sbjct: 715 GVSQKEFLKSLKYSSHVLAMSATPIPRTLQMSLTGLKELSIIATPPLNRLEVRTSVMP-- 772

Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAII 521
             D VI R   +L E   G +++++ P+I+  E  E   + +V            S  I 
Sbjct: 773 -FDTVIIR-DALLREHFRGGRSFYVVPRIKDMEDIEKQLKQIVPEL---------SYKIA 821

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M+    + VM  F  G   +LI+TT+IE GID+ +A+ +II NA+  GL+QL+QLRG
Sbjct: 822 HGKMTPSKIDEVMSEFYAGKFDILISTTIIESGIDITEANTMIIHNADTLGLSQLYQLRG 881

Query: 582 RVGRGE--EISSCILLYHPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636
           R+GRG+    +   +  +  L ++S  RL +++N+     GF IA  D   R  G ++G 
Sbjct: 882 RIGRGKIRGYAYLTVASNKKLMQHSLRRLEIIQNSCALGSGFTIASHDADLRGFGNLIGE 941

Query: 637 KQSGMPKFLIAQPELHDSLLE 657
           +QSG  + + A  EL+  +LE
Sbjct: 942 EQSGQIREVGA--ELYQEMLE 960


>gi|332885155|gb|EGK05406.1| hypothetical protein HMPREF9456_02607 [Dysgonomonas mossii DSM
           22836]
          Length = 1108

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 206/378 (54%), Gaps = 17/378 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  A  D+  DM     M R++ GDVG GKT V++ A   AV    Q  ++ P 
Sbjct: 547 YEDTPDQVKATADVKLDMENSKPMDRLICGDVGFGKTEVSIRAAFKAVTDNKQVAVLVPT 606

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QHY+  K+  ++    VE I+        ++ +  +  G+  I+IGTH +    I
Sbjct: 607 TVLAYQHYQTFKERLKDFPCRVEYISRARSAGQIKEVINDLKEGKVDILIGTHRIVGKDI 666

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           Q+  L L+I+DE+ +FGV  + KL Q  +    L MTATPIPRTL  + +G  D+S IT 
Sbjct: 667 QFKDLGLLIIDEEQKFGVAVKEKLKQMKSNVDTLTMTATPIPRTLQFSLMGARDLSAITT 726

Query: 451 KPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R PI+T    ++  D +I  E ++  +S   + ++I  +I+   E     +++R  
Sbjct: 727 PPPNRYPIQT---EVHTFDPLIIREAIEFEMSRNGQVFFINNRIKSIHE--LEDIIKR-- 779

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
              E   + IA+ HG+M     ES++  F N    +L+AT+++E GID+ +A+ III NA
Sbjct: 780 ---EVPDARIAVGHGQMDPAKLESIIIDFVNQEYDVLLATSIVESGIDIPNANTIIINNA 836

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
           ++FGL+ LHQLRGRVGR  + +   LL  P   L+  +  RL  ++N  +   GF IA +
Sbjct: 837 QNFGLSDLHQLRGRVGRSNKKAFAYLLAPPLHTLTPEARRRLQAIENFSELGHGFHIAMQ 896

Query: 624 DLKQRKEGEILGIKQSGM 641
           DL  R  G +LG +QSG 
Sbjct: 897 DLDIRGAGNLLGAEQSGF 914


>gi|332829530|gb|EGK02179.1| hypothetical protein HMPREF9455_01813 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 1108

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 137/409 (33%), Positives = 217/409 (53%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  + ++E G   + +  +  ++  +  +  T  Q  A  D+ QDM     M R++ 
Sbjct: 517 LIQLYAKRRQEEGFKFSPDSFLQHELEASFIYEDTPDQVKATADVKQDMENSKPMDRLIC 576

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+     AV    Q  ++ P  +LA QHY+  ++  ++    VE I+   
Sbjct: 577 GDVGFGKTEVAIRGAFKAVSDNKQVAVLVPTTVLAYQHYQTFRERLKDFPCRVEYISRAR 636

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                ++ L  +  G+  ++IGTH +    IQ+  L L+I+DE+ +FGV  + KL Q  +
Sbjct: 637 SANQIKETLNDLKEGKVDVLIGTHRIVSKDIQFKDLGLLIIDEEQKFGVAVKEKLKQMKS 696

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKV 477
               L MTATPIPRTL  + +G  D+S IT  P  R PI+T    ++  D  I  E ++ 
Sbjct: 697 NVDTLTMTATPIPRTLQFSLMGARDLSAITTPPPNRYPIQT---EVHTFDPHIIREAIEF 753

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            +S   + ++I  +I+   E     ++ R     E   + + + HG+M     ESV+  F
Sbjct: 754 EMSRNGQVFFINNRIKNIYE--LEDIIRR-----EVPDARVVVGHGQMDPAKLESVIIDF 806

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +LIAT++IE GID+ +A+ II+ NA++FGL+ LHQLRGRVGR  + +   LL  
Sbjct: 807 VNHEYDVLIATSIIESGIDIPNANTIIVNNAQNFGLSDLHQLRGRVGRSNKKAFAYLLAP 866

Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           P   L+  +  RL  ++N  +   GF IA +DL  R  G +LG +QSG 
Sbjct: 867 PLHTLTPEARRRLQAIENFSELGHGFHIAMQDLDIRGAGNLLGAEQSGF 915


>gi|241896607|ref|ZP_04783903.1| transcription-repair coupling factor [Weissella paramesenteroides
           ATCC 33313]
 gi|241870088|gb|EER73839.1| transcription-repair coupling factor [Weissella paramesenteroides
           ATCC 33313]
          Length = 1166

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 135/382 (35%), Positives = 208/382 (54%), Gaps = 25/382 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  ++K+I  DM +   M R+L GDVG GKT VA+ A   A   G Q  ++ P
Sbjct: 617 PYPETPDQIRSVKEIKADMEKSRPMDRLLVGDVGFGKTEVAMRAAFKAAHEGKQVAMLVP 676

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH----IIIGTHAL 385
             ILAQQHY+      + T + +      M +   +K +  I  G  +    I+IGTH+L
Sbjct: 677 TTILAQQHYDSFLNRFEGTNLKI----AWMSRFQTKKQMTEIKTGLKNHTIDIVIGTHSL 732

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               + +  L L+I+DE+ RFGV+ + +L    T   VL +TATPIPRTL +  +G  D+
Sbjct: 733 LAKDVAFGDLGLLIIDEEQRFGVKHKERLKSLQTNVDVLTLTATPIPRTLNMAMVGVRDL 792

Query: 446 SKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           S I   PA R PI+T ++  N   I   IER    ++ G + +++  ++     ++   V
Sbjct: 793 SVIETPPANRYPIQTYVMEQNGRVIANAIER---EMARGGQTFYLHNRV-----ADIEKV 844

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
                SL     + +A IHG+M++   E ++  F NG   +L+ TT+IE G+D+ +A+ +
Sbjct: 845 AGMIQSLVPE--AQVAYIHGQMTETQMEGILVDFINGEYDVLVTTTIIETGVDIPNANTL 902

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGF 618
            +ENA++ GLAQL+QLRGRVGR   ++     Y     L++ S  RL+ +++ TE   GF
Sbjct: 903 FVENADYMGLAQLYQLRGRVGRSNNVAYAYFTYPGTRSLNEESEKRLTAIRDFTELGSGF 962

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL  R  G++LG  Q G
Sbjct: 963 KIAMRDLSIRGAGDLLGQSQHG 984


>gi|254420843|ref|ZP_05034567.1| transcription-repair coupling factor [Brevundimonas sp. BAL3]
 gi|196187020|gb|EDX81996.1| transcription-repair coupling factor [Brevundimonas sp. BAL3]
          Length = 1156

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 152/455 (33%), Positives = 245/455 (53%), Gaps = 35/455 (7%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
           S A+ERL    +  G IAL   R   + +  +P    G  A+   R  P+  T  Q +AI
Sbjct: 564 SKAKERLR--AMAEGLIALAAKRALRETDAVVP--PPGLFAEFCAR-FPYEETDDQLNAI 618

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-F 340
            D+L+D+ +   M R++ GDVG GKT VAL A       G Q  I+AP  +LA+QHY+ F
Sbjct: 619 GDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVAPTTLLARQHYKTF 678

Query: 341 IKKYTQNTQIIVEI--ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +++      + ++  + G    +  R  L+    G   I++GTHA+  + + +  L LV
Sbjct: 679 TERFAGWPVKVRQLSRMVGGKEASETRAGLK---DGSVEIVVGTHAVLSEQVGFRDLGLV 735

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+  FGV+ + KL       H+L +TATPIPRTL +   G  ++S I   P  R  +
Sbjct: 736 IVDEEQHFGVKHKEKLKSLRADVHLLTLTATPIPRTLQMALSGIREMSIIATPPVDRLAV 795

Query: 459 KTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T + P    D V+ R + +L E   G +AY++ P++++         +E+F  L E   
Sbjct: 796 RTYVTP---WDPVLVR-EALLREKYRGGQAYYVAPRLKDL------PAIEKF--LREQVP 843

Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                + HG+MS    E VM +F +G   +L++TT++E G+D+  A+ +++  A+ FGLA
Sbjct: 844 EVKFVVGHGQMSATQLEEVMSAFYDGEYDVLVSTTIVESGLDIPTANTLVVHRADMFGLA 903

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QL+Q+RGRVGR +  +   L      P++ ++  RL VL++ ++   GF +A  DL QR 
Sbjct: 904 QLYQIRGRVGRSKARAFAYLTTDAVKPMTLSAERRLQVLQSLDNLGAGFQLASHDLDQRG 963

Query: 630 EGEILGIKQSGMPKFL---IAQPELHDSLLEIARK 661
            G +LG +QSG  + +   + Q  L D++ E+  K
Sbjct: 964 GGNLLGDEQSGHIREVGVELYQQMLEDAVAELREK 998


>gi|210623288|ref|ZP_03293705.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275]
 gi|210153689|gb|EEA84695.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275]
          Length = 1147

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 141/429 (32%), Positives = 225/429 (52%), Gaps = 19/429 (4%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EWT + A+ R   +++    I L   R++ K   G   + +    ++     P+  T  Q
Sbjct: 566 EWTKAKAKVRKEIEDMTEELINLYAKREKIK---GYKFSKDTVWQKEFEDKFPYQETDDQ 622

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AIKD  +DM     M R++ GDVG GKT VA+ A   A   G Q  ++ P  ILAQQH
Sbjct: 623 LKAIKDTKKDMESPRVMDRLICGDVGYGKTEVAIRAAFKACMDGKQVAVLVPTTILAQQH 682

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y    +   +  I VE+++       ++K +E    G   ++IGTH +    I+  KL L
Sbjct: 683 YNTFSERFADYPIRVEVLSRFKTPKQQKKIIEDAKKGMVDVLIGTHRIISKDIELPKLGL 742

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           V++DE+ RFGV+ +  L +      VL ++ATPIPRTL ++  G  D++ I E P  R P
Sbjct: 743 VVIDEEQRFGVKHKETLKKVKNTVDVLTLSATPIPRTLHMSLSGIRDMTVIEEPPQERHP 802

Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           + T +      D +I + ++  +S G + +++  ++E         + ++   L     +
Sbjct: 803 VITYVTEAR--DSIIQDEIEKEISRGGQVFFVYNRVE-----GIEGIADKVRKLVPD--A 853

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A+ HGRMS    E ++ +F      +L+ TT+IE G+D+ +A+ +II +A+  GLAQL
Sbjct: 854 RVAVAHGRMSSKTLEDIIIAFMQKEFDVLVCTTIIETGMDIANANTMIIYDADKMGLAQL 913

Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEG 631
           +QLRGRVGR        L+Y  +  LS+ +  RL  +K  TE   GF IA  DL+ R  G
Sbjct: 914 YQLRGRVGRSTRQGYAFLMYERNKSLSEIAEKRLKAIKEFTEFGSGFKIAMRDLEIRGAG 973

Query: 632 EILGIKQSG 640
           ++LG +Q G
Sbjct: 974 DVLGAQQHG 982


>gi|126696368|ref|YP_001091254.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9301]
 gi|126543411|gb|ABO17653.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9301]
          Length = 1169

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 132/425 (31%), Positives = 234/425 (55%), Gaps = 18/425 (4%)

Query: 258  EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +G    ++  + P+ PT  Q +A+K+I  DM     M R++ GDVG GKT VA+ A+  A
Sbjct: 599  DGPWQDELEESFPYQPTPDQITAVKEIKSDMESDKPMDRLVCGDVGFGKTEVAVRAIFKA 658

Query: 318  VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
            + +G Q + +AP  ILAQQH+  I        I V ++        RR+    + + +  
Sbjct: 659  ITSGKQVIFLAPTTILAQQHWRTINNRFSPYPIKVSLLNRFKSINERREIYAGLKNNKID 718

Query: 378  IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +++ TH +    I+   L L+++DE+ RFGV+Q+ K+ +  T   VL ++ATPIPRTL +
Sbjct: 719  LVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYM 778

Query: 438  TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +  G   +S +   P  R+ IKT +  I+ +D +   +   L  G + +++ P+I     
Sbjct: 779  SLSGLRQMSLLNTPPPSRRSIKTYLSEID-MDVIRTAINKELDRGGQIFYVLPRI----- 832

Query: 498  SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            S+    +++  ++  +    +A  HG+M++ + E+ M +F NG   L+I TT+IE G+D+
Sbjct: 833  SDIDQAIDKLKNMIPNLKFIVA--HGQMNETELENAMIAFNNGEVDLMICTTIIESGLDI 890

Query: 558  VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVLKNT 614
               + IIIE++  FGL+QL+QLRGRVGR   + +   L++P ++K    +  RL  +K+ 
Sbjct: 891  PKVNTIIIEDSHKFGLSQLYQLRGRVGRS-GVQAHAWLFYPNINKINDAAKQRLKAIKDF 949

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILT 668
             +   G+ +A +D++ R  G +LG +QSG      + +    LH+++ EI+ ++   +  
Sbjct: 950  SELGSGYQLAMKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEVND 1009

Query: 669  QDPDL 673
               DL
Sbjct: 1010 TQIDL 1014


>gi|317495443|ref|ZP_07953812.1| transcription-repair coupling factor [Gemella moribillum M424]
 gi|316914502|gb|EFV35979.1| transcription-repair coupling factor [Gemella moribillum M424]
          Length = 1185

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 144/409 (35%), Positives = 230/409 (56%), Gaps = 19/409 (4%)

Query: 242 LMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L++   K+E+  G   + +  + Q+   +  F PT  Q  A ++I +DM ++  M R+L 
Sbjct: 574 LIKLYIKRELSSGYAYSFDSSLQQEFEDDFSFIPTDDQLKATEEIKRDMEKQRPMDRLLC 633

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGN 358
           GDVG GKT VA+     AV    Q  ++ P  +LA+QHYE F+ ++  N  + +E+++  
Sbjct: 634 GDVGFGKTEVAMRVAFKAVMDVKQVAVLVPTTLLAEQHYENFVNRFA-NFPVNIEVVSRF 692

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                  +  +R+  G+  IIIGTH L  D  +Y  L L+I+DE+ RFGV+ + K+    
Sbjct: 693 KSAKDITEICKRLREGKIDIIIGTHKLLNDKFKYKDLGLLIIDEEQRFGVKHKEKIKHLK 752

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               VL ++ATPIPRTL ++ +G  D+S I   P+ R+PI+T +   N +  V E +   
Sbjct: 753 NTIDVLTLSATPIPRTLHMSLIGIRDLSVIETPPSERQPIQTFVTAQNNM-IVKEAIMNE 811

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +S G + +++  +++        S+ E++  L       +IA  HGRM+  + ES+M   
Sbjct: 812 VSRGGQVFYVYNRVD--------SIDEKYLELKRLLPDINIAYAHGRMTQRELESIMSDV 863

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +    LLI TT+IE GID+ + + +I+E+A+ FGL+QL+QLRGRVGR    +   L+Y 
Sbjct: 864 IDRKYDLLITTTIIETGIDISNVNTLIVEDADRFGLSQLYQLRGRVGRSSREAYAYLMYQ 923

Query: 598 P--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGM 641
           P   L++NS  RLS +KN      GF IA +DL  R  G++LG +Q G 
Sbjct: 924 PFKALTENSEKRLSAIKNFTTLGSGFKIAMQDLSIRGAGDVLGGRQHGF 972


>gi|297243627|ref|ZP_06927558.1| transcription-repair coupling factor [Gardnerella vaginalis AMD]
 gi|296888378|gb|EFH27119.1| transcription-repair coupling factor [Gardnerella vaginalis AMD]
          Length = 1202

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 136/428 (31%), Positives = 224/428 (52%), Gaps = 17/428 (3%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W  + A+ +    E+    I L   R+Q +   G   + +    +++    P+  T  Q
Sbjct: 607  DWAQTKAKAKKHVHEIAENLIKLYSARQQSR---GFAFSKDTPWQKELEDAFPYQETADQ 663

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM +   M R++ GDVG GKT +AL A   AV+   Q V++ P  +L QQH
Sbjct: 664  LTTIDEVKADMEKPIPMDRLICGDVGFGKTEIALRAAFKAVQDSKQVVVLVPTTLLVQQH 723

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE      +   + V  ++         + L  +  G   ++IGTH L   SI++  L L
Sbjct: 724  YETFTNRFEGFPVKVAAMSRFQTSKEIEETLAGLQDGSIDVVIGTHKLLNPSIKFKDLGL 783

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 784  VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 843

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T +   +   +V   +K  L  G + +++  ++E     +  SV  +   L       
Sbjct: 844  VLTYVGAYDN-SQVAACIKRELLRGGQVFYVHNRVE-----DISSVASKIQELVPDV--R 895

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +AI HG+M +   ++V+  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH
Sbjct: 896  VAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 955

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY P  P+++ S+ RLS +        GF +A +DL+ R  G 
Sbjct: 956  QLRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQHTALGSGFDVAMKDLELRGTGN 1015

Query: 633  ILGIKQSG 640
            +LG +QSG
Sbjct: 1016 LLGDEQSG 1023


>gi|326334855|ref|ZP_08201056.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692892|gb|EGD34830.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 1108

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 144/443 (32%), Positives = 233/443 (52%), Gaps = 20/443 (4%)

Query: 237 QIA--LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           QIA  L+ +  + K+ +G     +  + +++  +  +  T  Q  A  ++ QDM     M
Sbjct: 515 QIAFNLIQLYAKRKESVGYAFAPDSFLQKELEASFIYEDTPDQSKATLEVKQDMESARPM 574

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VA+ A   AV+   Q  ++ P  ILA QHY+      +   + VE 
Sbjct: 575 DRLVCGDVGFGKTEVAIRAAFKAVDNSKQVAVLVPTTILAFQHYQTFCDRLKGLPVRVEY 634

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +        + + L  +A G+  I+IGTH +  + ++Y  L L+I+DE+ +FGV  + KL
Sbjct: 635 LNRFRTAKEKNQVLTDLALGKIDILIGTHQIVNEKVKYKDLGLLIIDEEQKFGVAVKDKL 694

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                   VL +TATPIPRTL  + +   D+S IT  P  R PI++ +I  +  + + + 
Sbjct: 695 KTLRENIDVLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIESQVITFSE-EAIRDA 753

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           +   L  G + ++I  ++E  KE     +++R         + I I HG+M     E VM
Sbjct: 754 ISYELQRGGQVFFIHNRVENIKE--VAGMIQRLVP-----DARIGIGHGQMEGKALEEVM 806

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F NG   +L+ATT+IE G+DV +A+ I I NA+HFGL+ LHQ+RGRVGR  + + C  
Sbjct: 807 LAFINGDYDILVATTIIESGLDVPNANTIFIHNAQHFGLSDLHQMRGRVGRSNKKAFCYF 866

Query: 595 LYHPPLS---KNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FL 645
           +  P LS   ++S  R+  +    D   G  IA +DL+ R  G++LG +QSG      F 
Sbjct: 867 I-TPNLSELPEDSRKRIQAIAQFSDLGSGIQIAMKDLEIRGAGDLLGGEQSGFINDIGFD 925

Query: 646 IAQPELHDSLLEIARKDAKHILT 668
             Q  L ++++E+   +   + T
Sbjct: 926 AYQKILQEAVMELKENEFASLYT 948


>gi|302336465|ref|YP_003801672.1| transcription-repair coupling factor [Olsenella uli DSM 7084]
 gi|301320305|gb|ADK68792.1| transcription-repair coupling factor [Olsenella uli DSM 7084]
          Length = 1171

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 131/384 (34%), Positives = 204/384 (53%), Gaps = 15/384 (3%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q++  + P+  T  Q  AI DI  DM     M R+L GDVG GKT VAL A     +   
Sbjct: 621 QEMESSFPYEVTIDQARAIADIKADMEASKPMDRLLCGDVGFGKTEVALRAAFKCCQDAR 680

Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++ P  ILAQQH+E F  ++     + V++++  +  A +R+ALE  A G   ++IG
Sbjct: 681 QVMVLCPTTILAQQHFETFFSRFVP-FDLSVKVLSRFVTPAQQRRALEGFAKGTVDVLIG 739

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH L    +  + L LVI+DE+ RFGVQ + +L        VL ++ATPIPRT+ +   G
Sbjct: 740 THRLLSSDVNPHDLGLVIIDEEQRFGVQHKEQLKNMREQVDVLTLSATPIPRTMQMAMSG 799

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D+S I   P GR P++  +   +  D V E ++  L    + Y++  ++     +   
Sbjct: 800 VRDMSLILTPPPGRLPVRVTVGEWD-PDLVSEAIRAELGREGQVYYVSNRV-----TTIE 853

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             VER         + + + HG+MS    E +M +F      +L+ATT+IE GID    +
Sbjct: 854 DAVERVREAAPE--ARVGVAHGKMSATQAEDIMLAFSEHEIDVLVATTIIESGIDNPHTN 911

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED--- 616
            +IIE+++  GLAQL+QL+GRVGRG   +    ++    PL+  +  RL+ +   +D   
Sbjct: 912 TLIIEDSQRLGLAQLYQLKGRVGRGRTQAYAYFMFPGELPLTPEATDRLTAINEYQDLGS 971

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           G  IA  DL+ R  G ++G +Q G
Sbjct: 972 GMRIAMRDLEIRGAGSLMGAEQHG 995


>gi|296131721|ref|YP_003638968.1| transcription-repair coupling factor [Thermincola sp. JR]
 gi|296030299|gb|ADG81067.1| transcription-repair coupling factor [Thermincola potens JR]
          Length = 1178

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 140/409 (34%), Positives = 226/409 (55%), Gaps = 21/409 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  AIK+I +DM +   M R+L GDVG GKT VA+ A   AV    Q  ++ P
Sbjct: 629  PYEETPDQLRAIKEIKEDMERPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDSRQVAVLVP 688

Query: 330  IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              ILAQQHY  F+++++    I +E+++       +++ L+ +  G   I+IGTH L Q+
Sbjct: 689  TTILAQQHYNTFVERFS-GYPIKIEMLSRFRSPKEQQEILKNLKTGGVDIVIGTHRLVQN 747

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +Q+ KL LVIVDE+ RFGV  + +L Q      VL +TATPIPRTL ++ +G  D+S +
Sbjct: 748  DVQFKKLGLVIVDEEQRFGVAHKERLKQLRKNVDVLTLTATPIPRTLHMSLVGVRDMSIL 807

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--SNFRSVVER 506
               P  R P++T ++  N  D + + ++  +  G + Y++  +I +  +  +  R+ V  
Sbjct: 808  ETPPEDRWPVQTYVLEFN-WDVIGDAVRKEMDRGGQVYFVHNRIMDIDQIAAQLRAAVPE 866

Query: 507  FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                     + +A+ HG+M +   E VM  F  G   +L+ TT+IE G+D+ + + +I++
Sbjct: 867  ---------ARVAVAHGQMKEDQLEQVMLEFLEGEYDVLLCTTIIETGLDIPNVNTLIVD 917

Query: 567  NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIA 621
             A+  GL+QL+QLRGRVGR   ++     Y     L++ +  RL  ++  TE   GF IA
Sbjct: 918  EADRMGLSQLYQLRGRVGRSHRLAYAYFTYRRDKVLTEVAEKRLQAIREFTEFGSGFKIA 977

Query: 622  EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
              DL+ R  G  LG +Q G    +    +++  LLE A K+ K  L ++
Sbjct: 978  MRDLEIRGAGNFLGPEQHG--HMMAVGFDMYCRLLEEAVKELKGDLIEE 1024


>gi|302877849|ref|YP_003846413.1| transcription-repair coupling factor [Gallionella capsiferriformans
           ES-2]
 gi|302580638|gb|ADL54649.1| transcription-repair coupling factor [Gallionella capsiferriformans
           ES-2]
          Length = 1134

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 202/377 (53%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q +AI  +++D+     M R++ GDVG GKT VAL A   AV  G Q  ++ P 
Sbjct: 591 FEETPDQAAAINAVIEDLQSGKPMDRLICGDVGFGKTEVALRAAFVAVMDGKQVAVLVPT 650

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QHY+       +  I +  ++       + +AL+ +A G+  IIIGTH L Q  I
Sbjct: 651 TLLAEQHYQNFSTRFADWPIRIGELSRFRSAKEQTQALKEMAEGKLDIIIGTHKLIQKGI 710

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+I+DE+HRFGVQQ+ +L        +L +TATPIPRTL ++  G  D S I  
Sbjct: 711 EFDNLGLLIIDEEHRFGVQQKERLKALRAEVDILTLTATPIPRTLAMSLEGLRDFSIIAT 770

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R  IKT +   ++  I E + R    L  G + Y++  +++        ++ E+  
Sbjct: 771 APQRRLSIKTFVSAYSQGVIREAVLR---ELKRGGQVYFLHNEVD-----TIANMAEKLT 822

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L     + I   HG+M + + E+VM  F      +L+ TT+IE GIDV  A+ II+  A
Sbjct: 823 ELLPE--ARIRTAHGQMGERELEAVMRDFYQQRFNILLCTTIIETGIDVPTANTIIMNRA 880

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEE 623
           + FGLAQLHQLRGRVGR    +   LL      L+  +  RL  ++  E    GF +A  
Sbjct: 881 DRFGLAQLHQLRGRVGRSHHQAYAYLLVDSLDGLTVQAKKRLEAIQAMEQLGSGFFLAMH 940

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  GE+LG  QSG
Sbjct: 941 DLEIRGAGEVLGESQSG 957


>gi|328956088|ref|YP_004373421.1| transcription-repair coupling factor [Coriobacterium glomerans PW2]
 gi|328456412|gb|AEB07606.1| transcription-repair coupling factor [Coriobacterium glomerans PW2]
          Length = 1187

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 131/377 (34%), Positives = 202/377 (53%), Gaps = 15/377 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+ PT+ Q  AI DI  DM     M R+L GDVG GKT VAL A    V+ G Q +++ P
Sbjct: 629 PYEPTRDQIEAIGDIKADMEAPKPMDRLLCGDVGFGKTEVALRAAFKCVDNGYQVMVLCP 688

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE + +      I VE+++     +    AL   + G   +++GTH L    
Sbjct: 689 TTILAQQHYETLFERFAPFDIEVEVLSRFRTPSELSAALAGFSDGSVDVLVGTHRLLSSD 748

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +  + L LVI+DE+ RFGVQ + +L        VL ++ATPIPRT+ +   G  D+S IT
Sbjct: 749 VNPHSLGLVIIDEEQRFGVQHKEQLKNLREQIDVLTLSATPIPRTMQMAMSGVRDMSLIT 808

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P GR+P+ TV +     D V   ++  L+   + Y++  ++        +++ +  + 
Sbjct: 809 TPPCGRRPV-TVHVGEYDPDTVSAAIRFELAREGQVYYVSNRV--------KTIEDAIDR 859

Query: 510 LHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +HE    + + + HG+MS  + E  M  F      +L+ATT+IE GID    + +IIE+A
Sbjct: 860 VHEAAPEARVGVAHGKMSSREVEETMIDFTAHRIDVLVATTIIESGIDNPHTNTLIIEDA 919

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
           +  GLAQL+QL+GRVGR    +    ++    PL++ +  RL  L   ++   G  IA  
Sbjct: 920 QRLGLAQLYQLKGRVGRSASQAFAYFMFPGEQPLTQEATERLCALSEFQELGSGMRIAMR 979

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G ++G +Q G
Sbjct: 980 DLEIRGAGSLVGAEQHG 996


>gi|54026849|ref|YP_121091.1| putative transcription-repair coupling factor [Nocardia farcinica IFM
            10152]
 gi|54018357|dbj|BAD59727.1| putative transcription-repair coupling factor [Nocardia farcinica IFM
            10152]
          Length = 1205

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 129/375 (34%), Positives = 200/375 (53%), Gaps = 13/375 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q V++ P 
Sbjct: 634  FTETVDQMTAIAEVKADMEKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPT 693

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LAQQH +   +      + V+ ++     A  R  LE +A G   I++GTH L Q  +
Sbjct: 694  TLLAQQHLQTFTERVAGFPVTVKGLSRFTDPAESRAVLEGMADGSVDIVVGTHRLLQTGV 753

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 754  RWKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 813

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R P+ T +   N         + +L +G+  Y         + S+     +R   L
Sbjct: 814  PPEERHPVLTYVGAYNDKQVTAAIRRELLRDGQVFYV------HNRVSSIDKAAKRIRDL 867

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + + + HG+M++   E  +  F      +L+ TT+IE G+D+ +A+ +I+E A+ 
Sbjct: 868  VPE--ARVVVAHGQMNEDTLERTVQGFWQREYDVLVCTTIIETGLDISNANTLIVERADT 925

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
             GL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    D   G  +A +DL
Sbjct: 926  LGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTETAYDRLATIAQNSDLGAGMAVAMKDL 985

Query: 626  KQRKEGEILGIKQSG 640
            + R  G +LG +QSG
Sbjct: 986  EIRGAGNVLGAEQSG 1000


>gi|119897964|ref|YP_933177.1| transcription-repair coupling factor [Azoarcus sp. BH72]
 gi|119670377|emb|CAL94290.1| transcription-repair coupling factor [Azoarcus sp. BH72]
          Length = 1150

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 140/378 (37%), Positives = 203/378 (53%), Gaps = 19/378 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AI  ++ DM     M R++ GDVG GKT VAL A   AV  G Q V++ P 
Sbjct: 606 FETTPDQQAAIDAVVGDMKSGRPMDRLVCGDVGFGKTEVALRAAFIAVADGKQVVVLCPT 665

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QHY+       +  I +  ++       + +AL+++  G+  IIIGTH L Q  +
Sbjct: 666 TLLAEQHYQTFADRFADWPIKIAELSRFKSAKEQAEALKQLGEGKVDIIIGTHRLLQKDV 725

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            + +L LVI+DE+HRFGV+Q+  L Q  +   +L +TATPIPRTL L   G  + S I  
Sbjct: 726 LFKRLGLVIIDEEHRFGVRQKEALKQLRSEVDILTLTATPIPRTLGLAMEGLREFSVIAT 785

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R  IKT    + R  + I R  V+     G + Y++  +++  +  N R      N
Sbjct: 786 APQKRLAIKTF---VQRWSKGIVREAVLREFKRGGQVYFLHNEVDTIE--NVR------N 834

Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            L E    + I + HG++ + + E VM  F      LL+ TT+IE GI++  A+ I+I  
Sbjct: 835 ELAELLPEARIVVGHGQLPERELERVMRDFTQQRANLLLCTTIIETGINIPTANTIVINR 894

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLIAE 622
           A+ FGLAQLHQLRGRVGR    +   LL   H   +  +  RL  +   E+   GF +A 
Sbjct: 895 ADRFGLAQLHQLRGRVGRSHHQAYAYLLTDAHAKPTAQAQKRLEAISMMEELGSGFYLAM 954

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  GE+LG  QSG
Sbjct: 955 HDLEIRGAGEVLGENQSG 972


>gi|296136148|ref|YP_003643390.1| transcription-repair coupling factor [Thiomonas intermedia K12]
 gi|295796270|gb|ADG31060.1| transcription-repair coupling factor [Thiomonas intermedia K12]
          Length = 1160

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 151/426 (35%), Positives = 225/426 (52%), Gaps = 25/426 (5%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   AV  G Q  ++AP 
Sbjct: 608  FEETPDQAAAIHAVVQDMISPKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPT 667

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QH E  +    +  + +  ++          AL+ +A G   I+IGTH L   ++
Sbjct: 668  TLLAEQHCETFRNRFADWPVRIAEMSRFRSTKEISAALDGLARGTVDIVIGTHKLLSPTV 727

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++ +L LVIVDE+HRFGV+ +  L     +  +L +TATPIPRTL +   G  D+S I  
Sbjct: 728  KFDRLGLVIVDEEHRFGVRHKEALKAMRASVDLLTLTATPIPRTLGMALEGLRDLSVIAT 787

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  IKT +    R +      + +L E   G + Y++  ++E        ++  R 
Sbjct: 788  APQKRLAIKTFV----RSESGAVMREAILREIKRGGQVYFLHNEVE--------TIENRR 835

Query: 508  NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              L E    + I I HG+M + D E VM  F      +L+ TT+IE GIDV  A+ I++ 
Sbjct: 836  RQLEELVPEARIEIAHGQMHERDLERVMRDFHAQRFNILLCTTIIETGIDVPSANTIVMA 895

Query: 567  NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621
             A+ FGLAQLHQLRGRVGR    +   LL      L+K +  RL  ++  E+   GF +A
Sbjct: 896  RADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDVQSLTKQASQRLEAIQQMEELGSGFYLA 955

Query: 622  EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
              DL+ R  GE+LG +QSG  + +  Q  L++ +L  A K  +    ++PDL +  G + 
Sbjct: 956  MHDLEIRGAGEVLGEQQSGNMQEIGFQ--LYNDMLSEAVKALR--AGREPDLLNPLGVTT 1011

Query: 682  RILLYL 687
             I L++
Sbjct: 1012 EINLHV 1017


>gi|91215486|ref|ZP_01252457.1| transcription-repair coupling factor [Psychroflexus torquis ATCC
           700755]
 gi|91186438|gb|EAS72810.1| transcription-repair coupling factor [Psychroflexus torquis ATCC
           700755]
          Length = 1121

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 141/460 (30%), Positives = 239/460 (51%), Gaps = 20/460 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W S   +  A  + +A  +  L  +++ +K  G     +  +  ++  +  +  T  Q  
Sbjct: 505 WKSLKNKTKARVKKVAFDLIKLYAKRKLEK--GFQYGPDSHLQHELEASFIYEDTPDQGI 562

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D+  DM ++  M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  ILA QH++
Sbjct: 563 ATQDVKSDMEKEQPMDRLVCGDVGFGKTEIAIRAAFKAVDNGKQVAVLVPTTILAFQHHK 622

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +      + V+ +        RR  LE +  G   I+IGTH L   ++++  L L+I
Sbjct: 623 TFTERLSEFPVTVDYLNRFRTTKERRSVLEGLEDGSVDIVIGTHQLVSKAVKFKNLGLLI 682

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL         L +TATPIPRTL  + +   D+S I   P  R PI+
Sbjct: 683 IDEEQKFGVAVKDKLKTIKANVDTLTLTATPIPRTLQFSLMAARDLSTIKTPPPNRYPIE 742

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +I  +  D++ + +   +  G + ++I  +IE   E     +++R         + I 
Sbjct: 743 THVIRFSE-DQIRDAVSYEIERGGQVFFINNRIENINE--VAGLIQRLVP-----DAKIG 794

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E++M  F N    +L++TT+IE G+DV +A+ I I +A +FG++ LHQ+
Sbjct: 795 IGHGQMEGKKLENLMLQFMNNEFDVLVSTTIIESGLDVTNANTIFINSANNFGMSDLHQM 854

Query: 580 RGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           RGRVGR  + + C L+  PPL   + ++  RLS L+   D   G  IA +DL+ R  G++
Sbjct: 855 RGRVGRSNKKAFCYLIT-PPLTMMTDDAKKRLSALEQFSDLGSGINIAMKDLEIRGAGDL 913

Query: 634 LGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQD 670
           LG +QSG      F   Q  L++++ E+   + K +  ++
Sbjct: 914 LGGEQSGFISDIGFDTYQKILNEAIQELKENEFKSVYDEE 953


>gi|332638696|ref|ZP_08417559.1| transcription-repair coupling factor [Weissella cibaria KACC 11862]
          Length = 1172

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 145/433 (33%), Positives = 222/433 (51%), Gaps = 27/433 (6%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW     +     E +A ++  L   ++ K+    P   +  + +      P+  T  Q 
Sbjct: 568 EWQKAKAKVAKKVEDIADELLQLYAERELKQGFAFP--QDDDVIRDFEDAFPYPETPDQI 625

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + ++I  DM +   M R+L GDVG GKT VAL A   A  AG Q  ++ P  ILAQQHY
Sbjct: 626 RSTQEIKADMEKTRPMDRLLVGDVGFGKTEVALRAAFKAAHAGKQVAMLVPTTILAQQHY 685

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG----QAHIIIGTHALFQDSIQYYK 394
           E +        + V I    M +   +K ++    G       I++GTH +    + +  
Sbjct: 686 ESMLNRFDGFGVNVAI----MSRFQTKKQMDATKAGLKDHTIDIVVGTHRILSKDMDFAD 741

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+ RFGV+ + +L    T   VL +TATPIPRTL +  +G  D+S I   PA 
Sbjct: 742 LGLLIIDEEQRFGVKHKERLKALQTNVDVLTLTATPIPRTLNMAMVGVRDLSVIETPPAN 801

Query: 455 RKPIKTVIIPIN-RID-EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           R PI+T ++  N R+    IER    +S G + Y++  ++E     +   V     SL  
Sbjct: 802 RYPIQTYVMEQNGRVTASAIER---EMSRGGQTYYLHNRVE-----DIAQVAGMIESLVP 853

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + +  IHG+M++   E ++  F N    +L+ TT+IE G+D+ +A+ + +ENA+H G
Sbjct: 854 E--ARVGYIHGQMTEAQMEGILVDFINREYDVLVTTTIIETGVDIPNANTLFVENADHMG 911

Query: 573 LAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQ 627
           LAQL+QLRGRVGR   I+     Y     L++ S  RL+ +++ TE   GF IA  DL  
Sbjct: 912 LAQLYQLRGRVGRSNNIAYAYFTYPGTRSLNEESEKRLTAIRDFTELGSGFKIAMRDLSI 971

Query: 628 RKEGEILGIKQSG 640
           R  G++LG  Q G
Sbjct: 972 RGAGDLLGQSQHG 984


>gi|146298962|ref|YP_001193553.1| transcription-repair coupling factor [Flavobacterium johnsoniae
           UW101]
 gi|146153380|gb|ABQ04234.1| transcription-repair coupling factor [Flavobacterium johnsoniae
           UW101]
          Length = 1121

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 132/414 (31%), Positives = 222/414 (53%), Gaps = 18/414 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  + +++  DM     M R++ GDVG GKT VA+ A   AV+   Q  ++ P 
Sbjct: 560 YEDTPDQMKSTQEVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDNSKQVAVLVPT 619

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QHY    +  ++  + +  +        + + L+ +A G+  I+IGTH L   ++
Sbjct: 620 TILAYQHYRTFSERLKDMPVSIGYLNRFRTAKQKTQTLKDLAEGKLDIVIGTHQLVNKNV 679

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+IVDE+ +FGV  + KL   A     L +TATPIPRTL  + +   D+S IT 
Sbjct: 680 VFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIPRTLQFSLMAARDLSVITT 739

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R PI+T ++  N  +E+I + +   +    + ++I  +IE  KE     +++R   
Sbjct: 740 PPPNRYPIETNVVGFN--EEIIRDAISYEIQRNGQVFFINNRIENIKE--VAGMIQRLVP 795

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 + + I HG+M     E +M  F NG   +L+ATT+IE G+DV +A+ I I NA 
Sbjct: 796 -----NARVGIGHGQMDGAKLEELMLGFMNGDFDVLVATTIIESGLDVPNANTIFINNAN 850

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEED 624
           +FGL+ LHQ+RGRVGR  + + C  +  P   +++++  R+  L+   +   GF IA +D
Sbjct: 851 NFGLSDLHQMRGRVGRSNKKAFCYFICPPYSSMTEDARKRIQALEQFSELGSGFNIAMKD 910

Query: 625 LKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           L+ R  G++LG +QSG      F   Q  +++++ E+   + K +  ++ D+ +
Sbjct: 911 LEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYPEENDIDT 964


>gi|260887854|ref|ZP_05899117.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
           35185]
 gi|330838722|ref|YP_004413302.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
           35185]
 gi|260862360|gb|EEX76860.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
           35185]
 gi|329746486|gb|AEB99842.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
           35185]
          Length = 1118

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 143/431 (33%), Positives = 229/431 (53%), Gaps = 22/431 (5%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  + AR R + +++    IAL   R+  K   G   + +    ++     P+  T  Q
Sbjct: 499 EWVKAKARARASVEDIADELIALYAKRRAAK---GFAFSPDTPWQREFEDAFPYEETPDQ 555

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI++I  DM +   M R+L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH
Sbjct: 556 RRAIEEIKADMEKPEPMDRLLCGDVGFGKTEVAIRAAYKAVMDHKQVAVLVPTTVLAQQH 615

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF-QDSIQYYKLI 396
           ++       +  + V++I        ++  +ER+   +  ++IGTHA+  Q  + +  L 
Sbjct: 616 FQTFSARFADFGVSVDVICRFRSAKEQKATIERLEANKVDVLIGTHAILNQKRVHFSDLG 675

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+IVDE+ RFGV+Q+ K+ + A    VL ++ATPIPRTL ++ +G  D+S I   PA R 
Sbjct: 676 LLIVDEEQRFGVKQKEKIKKLAAGVDVLTLSATPIPRTLHMSLVGARDMSIIETPPAERF 735

Query: 457 PIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           P+++ +I  N   +   I R    L  G + Y++  ++E     +   +  R   L    
Sbjct: 736 PVQSYVIEDNGAVLKNAIRR---ELRRGGQVYFVYNRVE-----SIDIMRRRLEELVPE- 786

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I   HG+M++   E VM  F  G   +L+AT+++E G+DV +A+ II+ NA+ FGL+
Sbjct: 787 -ARIQTGHGQMAEELLERVMVDFYEGRYDILLATSIVENGLDVANANTIIVYNADRFGLS 845

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QL+Q+RGRVGR   ++    +Y     LS+ +  RL  +K   +   GF IA  DL+ R 
Sbjct: 846 QLYQMRGRVGRSNHMAFAYFVYQADKVLSEMAEKRLQAMKEFAELGAGFKIAMRDLEIRG 905

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 906 AGNLLGAEQHG 916


>gi|297193946|ref|ZP_06911344.1| transcriptional-repair coupling factor [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152012|gb|EFH31470.1| transcriptional-repair coupling factor [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 1070

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 146/433 (33%), Positives = 233/433 (53%), Gaps = 27/433 (6%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +WT + AR + A  E+ A  I L   R       G     +    +++     +  T  Q
Sbjct: 469 DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGPDTPWQRELEDAFAYVETPDQ 525

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 526 LSTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 585

Query: 338 Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           +  F ++Y+Q   ++   ++     A  +  LE +  G   I+IGTH LF    ++  L 
Sbjct: 586 FGTFSERYSQFP-VVTRALSRFQSDADAKATLEGLRDGSVDIVIGTHRLFSSETKFKDLG 644

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 645 LVIVDEEQRFGVEHKEQLKKLRADVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 704

Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
           P+ T + P    +I   + R   +L EG + ++I  ++E  ++  +  R +V        
Sbjct: 705 PVLTFVGPYEEKQIGAAVRR--ELLREG-QVFYIHNRVESIDRAAARLREIVPE------ 755

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 756 ---ARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESGIDIANANTLIVERGDNFG 812

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
           L+QLHQLRGRVGR  E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 813 LSQLHQLRGRVGRSRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 872

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +QSG
Sbjct: 873 RGAGNLLGGEQSG 885


>gi|320527116|ref|ZP_08028303.1| transcription-repair coupling factor [Solobacterium moorei F0204]
 gi|320132444|gb|EFW24987.1| transcription-repair coupling factor [Solobacterium moorei F0204]
          Length = 1130

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 125/409 (30%), Positives = 225/409 (55%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +    ++ IG   + + ++ +K   +  F  T  QE A+ +I +DM     M R++ 
Sbjct: 550 LLSLYANREQHIGFAFSKDNEMTKKFENSFSFDLTPDQEKAVAEIKKDMESNKPMDRLIC 609

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT V++ A   AV    Q  ++ P  ILA+QH+   +K  Q   + V+++   +
Sbjct: 610 GDVGFGKTEVSIRASFKAVCDNKQVAVLCPTTILAEQHFHTFQKRYQEFPVTVKVLNRFV 669

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A +++ L+ +  G+  IIIGTH L    +++  L L++VDE+ RFGV+ + K+ +   
Sbjct: 670 SPAEQKQILKELEEGKVDIIIGTHRLLSKDVKFKDLGLLVVDEEQRFGVEHKEKIKELKN 729

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL ++ATPIPRTL ++ +G   +S +   P  R  ++T ++  ++ + + + ++  L
Sbjct: 730 GVDVLSLSATPIPRTLQMSLVGIRSLSLLETPPLNRYSVQTYVVEKDK-NLIRDAIQKEL 788

Query: 480 SEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           S   + +++   I++      N +S+V           S + I+HG++  ++ E +M  F
Sbjct: 789 SRNGQVFYLHNNIDQIYNIARNIQSLVPE---------SRVGIVHGKLGKVEIEDIMQRF 839

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                 +L+ TT++E GID+ + + I+++NA+ FGLAQ++Q++GRVGR + ++   LL  
Sbjct: 840 IEKELDILVCTTIVENGIDIPNVNTILVDNAQDFGLAQIYQIKGRVGRSDRLAYAYLLIP 899

Query: 598 P--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGM 641
           P   LS+ +  RL+ +K       G+ IA  DL  R  G++LG  QSG 
Sbjct: 900 PRRQLSEVAQKRLTAVKEFARLGSGYKIAMRDLTIRGAGDLLGSNQSGF 948


>gi|34581455|ref|ZP_00142935.1| transcription-repair coupling factor [Rickettsia sibirica 246]
 gi|28262840|gb|EAA26344.1| transcription-repair coupling factor [Rickettsia sibirica 246]
          Length = 1122

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 240/439 (54%), Gaps = 35/439 (7%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           +IAL L++   K+++    +VE  + +  K   N PFS T+ Q  AI DI +D+     M
Sbjct: 541 EIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAINDIKEDLRNGMLM 600

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346
            R++ GDVG GKT VA+ A+    ++      Q  ++ P  IL  QH+    E  K +  
Sbjct: 601 DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGL 660

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           N + +  +I+    +  R +    +  G+ +IIIGTH+L   +I+++ L L+I+DE+  F
Sbjct: 661 NIKQLSSVISSKEAKIIRSE----LESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHF 716

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  + T ++P  
Sbjct: 717 GVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVHTSVMP-- 774

Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             D VI R   +L E   G +++++ P+I++        + ++   +    +  IA  +G
Sbjct: 775 -CDPVIIR-DALLREHFRGGRSFYVVPRIKD-----IEDIAKQLKQIVPELSYKIA--YG 825

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M+    + VM+ F  G   +L++TT+IE GID+ +A+ +II NA+  GL+QL+QLRGR+
Sbjct: 826 KMTPSKIDEVMNEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLYQLRGRI 885

Query: 584 GRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQ 638
           GRG+      L    H  ++ +S  RL +++N+     GF IA  D+  R  G ++G +Q
Sbjct: 886 GRGKMRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASRDMDLRGFGNLIGEEQ 945

Query: 639 SGMPKFLIAQPELHDSLLE 657
           SG  K +    EL+  +LE
Sbjct: 946 SGQIKEV--GTELYQEMLE 962


>gi|291515893|emb|CBK65103.1| transcription-repair coupling factor (mfd) [Alistipes shahii WAL
           8301]
          Length = 1112

 Score =  210 bits (535), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 139/410 (33%), Positives = 220/410 (53%), Gaps = 18/410 (4%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           IAL   RK  K   G   + +  +  ++  +  +  T  Q+SA   I +DM     M R+
Sbjct: 524 IALYAKRKASK---GYAFSHDSYLQHELEASFRWEDTPDQQSATAAIKKDMESDQPMDRL 580

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA+ A   A   G Q  ++ P  ILA QHY    +  ++  + VE I  
Sbjct: 581 VCGDVGFGKTEVAIRAAFKAAVDGKQVAVLVPTTILALQHYRSFTERLRDFPVRVEYINR 640

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                   +  E +A G+  I+IGTH +    I +  L L+I+DE+ +FGV  + KLT+ 
Sbjct: 641 TKSTKEVSQIREDLASGKIDILIGTHKMLGKQIVFRDLGLLIIDEEQKFGVAAKEKLTEM 700

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLK 476
           + +   L +TATPIPRTL  + +G  D+S I+  P  R+PI T     +  +E+I + ++
Sbjct: 701 SVSVDTLTLTATPIPRTLRFSLMGSRDLSVISTPPPNRQPILTESHVFS--EEIIRDAVE 758

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             L+ G + Y++  ++E+      + ++ R         + +A+ HG+M     E ++  
Sbjct: 759 AELARGGQVYFVHNRVEDLPA--LQGLITRLCP-----KARVAVGHGKMPAEQLEKLIMD 811

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   +L++TT++E GID+ +A+ II++NA++FGL+ LHQLRGRVGR  +   C LL 
Sbjct: 812 FIYGEFDVLVSTTIVENGIDIPNANTIIVDNAQNFGLSDLHQLRGRVGRSNQKGYCYLLS 871

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
            P   LS ++  RL  ++   D   GF IA +DL  R  G +LG +QSG 
Sbjct: 872 PPDELLSSDARRRLRAIEEFSDLGSGFNIAMQDLDIRGAGNLLGAEQSGF 921


>gi|194364979|ref|YP_002027589.1| transcription-repair coupling factor [Stenotrophomonas maltophilia
            R551-3]
 gi|194347783|gb|ACF50906.1| transcription-repair coupling factor [Stenotrophomonas maltophilia
            R551-3]
          Length = 1154

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 157/477 (32%), Positives = 248/477 (51%), Gaps = 30/477 (6%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W+   R+       +A ++  +  R+Q +   G+ + V+  + +      PF  T  Q 
Sbjct: 557  QWSKAKRKAAEKVRDVAAELLEIQARRQARA--GLALQVDRAMYEPFAAGFPFEETPDQL 614

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI   L+D+S    M R++ GDVG GKT VA+ A  AA  AG Q  ++ P  +LA+QHY
Sbjct: 615  AAIDATLRDLSSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHY 674

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +    +  + VE+++        +  LE++A G   +I+GTH L Q  +++  L +V
Sbjct: 675  RNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVAAGTIDVIVGTHRLLQPDVKFKDLGMV 734

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S I   P  R  +
Sbjct: 735  IVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPPNRLAV 794

Query: 459  KTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            +T    I + D  +  E  +  L+ G + Y++   +E        S+      L E    
Sbjct: 795  QTF---ITQWDNALLREAFQRELARGGQLYFLHNDVE--------SIGRMQRELSELVPE 843

Query: 517  S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ III  A+ FGLAQ
Sbjct: 844  ARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQ 903

Query: 576  LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
            LHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF +A  DL+ R  
Sbjct: 904  LHQLRGRVGRSHHRAYAYLVAPDRRSITPDAEKRLEAIASMDELGAGFTLATHDLEIRGA 963

Query: 631  GEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS---VRGQSIRI 683
            GE+LG  QSG M +   +   L+  LLE A +  K    + PDL +   VRG  + +
Sbjct: 964  GELLGEDQSGQMAEVGFS---LYTELLERAVRSIKQ--GKLPDLDAGEEVRGAEVEL 1015


>gi|57233929|ref|YP_181993.1| transcription-repair coupling factor [Dehalococcoides ethenogenes
           195]
 gi|57224377|gb|AAW39434.1| transcription-repair coupling factor [Dehalococcoides ethenogenes
           195]
          Length = 1148

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 137/408 (33%), Positives = 213/408 (52%), Gaps = 17/408 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  + K   G P + +    Q++  + P+  T  Q  A+ DI  DM     M R++ 
Sbjct: 575 LLDIYAKRKMASGYPFSTDTVWQQEMEASFPYLETPDQLKALYDIKADMENPRPMDRLIL 634

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV  G Q  ++ P  +LAQQHY   ++      + +E+++   
Sbjct: 635 GDVGYGKTEVAIRAAFKAVMDGKQVAVLVPTTVLAQQHYTTFRERLATFPVKIEVLSRFC 694

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             + ++  +E +  G+  I IGTH L Q  I +  L LVI+DE+ RFGV  +    +   
Sbjct: 695 SPSEQKTTVENLERGEVDICIGTHRLIQADITFKDLGLVIIDEEQRFGVAHKEFFKKLRA 754

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKV 477
              VL ++ATPIPRTL ++ +G  D+S I   P  R PIKTV+   +   I E I R   
Sbjct: 755 QVDVLTLSATPIPRTLHMSLVGVRDMSIIETPPGERLPIKTVVAAFDERLIREAILR--- 811

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            +    + +++  ++          + ER   L     + I I HG+M++    +VM  F
Sbjct: 812 EMERNGQVFFVNNRV-----MGINLLAERIQQLVPE--ARIGIAHGQMAEEKLAAVMADF 864

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                 +L+ TT+IE G+DV +A+ +II  A+ FGL QL+QLRGRVGR  +++    LY 
Sbjct: 865 VRHELDVLVCTTIIESGVDVPNANTLIINRADRFGLTQLYQLRGRVGRSSQLAYAYFLYE 924

Query: 598 PP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
               L+ ++  RL  +    +   G+ IA +DL+ R  G +LG+KQSG
Sbjct: 925 KDKRLTSDAEKRLKTIYEAAELGAGYGIAMKDLEIRGAGTLLGVKQSG 972


>gi|32266655|ref|NP_860687.1| ATP-dependent DNA helicase RecG [Helicobacter hepaticus ATCC 51449]
 gi|32262706|gb|AAP77753.1| ATP-dependent DNA recombinase RecG [Helicobacter hepaticus ATCC
           51449]
          Length = 628

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 147/383 (38%), Positives = 211/383 (55%), Gaps = 31/383 (8%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           + ++PFS T  Q SAIKDI  D+  K    R++ GDVG GKT+V L A+         ++
Sbjct: 236 IESLPFSLTSGQCSAIKDISLDLDSKIAARRLIMGDVGCGKTIVILCAVMMTYPH--TSI 293

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA Q YE  K+      ++   I  ++  A  R+ L+     +AH IIGT AL
Sbjct: 294 LMAPTTILATQLYEEAKR------LLPPFIKIHLITAKTRQDLQ-----EAHFIIGTQAL 342

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKL------TQKATAPHVLLMTATPIPRTLVLTS 439
               I    + LV+ DEQHRFG  QR  L        K   PH+L  +ATPIPRTL + +
Sbjct: 343 LYREITLENVALVMSDEQHRFGTNQRYGLEKIGQDAHKNARPHILQFSATPIPRTLAMIN 402

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              ID+S I + P  +K I T I+  +    ++  L+  +++G +A  I P +EE +  +
Sbjct: 403 AQFIDLSVIQDLPF-KKDISTSIVDKSTFKTLLSALQNEINQGHQAIIIYPLVEESEHLD 461

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK-NGTCKLLIATTVIEVGIDVV 558
           + S+ E  +   +HF +S+    G+  D +K++V+D F  NG+  LL+ATT++EVGI + 
Sbjct: 462 YLSLNEGLSFWQKHF-NSVHYTSGK--DKNKQNVIDDFAHNGS--LLLATTLVEVGISLP 516

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             S I+I   E  GLA LHQLRGRV R      C L  H P ++    RL    +T +GF
Sbjct: 517 KVSTIVIVAPERLGLATLHQLRGRVSRNGLKGYCYLYTHQPQNE----RLKAFCSTLNGF 572

Query: 619 LIAEEDLKQRKEGEIL-GIKQSG 640
            IAE DLK R  G++L G +QSG
Sbjct: 573 DIAELDLKYRNSGDLLSGERQSG 595


>gi|319902708|ref|YP_004162436.1| transcription-repair coupling factor [Bacteroides helcogenes P
           36-108]
 gi|319417739|gb|ADV44850.1| transcription-repair coupling factor [Bacteroides helcogenes P
           36-108]
          Length = 1129

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 137/409 (33%), Positives = 219/409 (53%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 531 LIKLYSQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSKATADVKADMESTRPMDRLVC 590

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  K+  +     V+ ++   
Sbjct: 591 GDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKERLKGLPCRVDYLSRAR 650

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  ++ +A G  +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 651 TAAQAKGVIKALADGDVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQLKV 710

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + LG  D+S I+  P  R PI+T +   N  +EVI + +   
Sbjct: 711 NVDTLTMTATPIPRTLQFSLLGARDLSVISTPPPNRYPIQTEVHTFN--EEVIADAINFE 768

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +S   + +++  +I    E   ++++ER           + I HG+M   + E ++  F 
Sbjct: 769 MSRNGQVFFVNNRISNLYE--LKAMIERRIP-----DCRVCIGHGQMEPAELEKIILDFV 821

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  P
Sbjct: 822 NYDYDVLLATTIIESGIDIPNANTIIINAAQNFGLSDLHQMRGRVGRSNKKAFCYLL-AP 880

Query: 599 PLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PLS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 881 PLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 929


>gi|78048574|ref|YP_364749.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037004|emb|CAJ24723.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 1154

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 207/381 (54%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++
Sbjct: 604 GFPFEETGDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 663

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QHY   +    +  + VE+++        +  LE++A G+  +IIGTH L Q
Sbjct: 664 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGEIDVIIGTHRLLQ 723

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S 
Sbjct: 724 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 783

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R  ++T I   +   + E  +R    LS G + Y++   +E        S+V 
Sbjct: 784 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 832

Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               L E    + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ II
Sbjct: 833 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 892

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
           I  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF 
Sbjct: 893 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 952

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 953 LATHDLEIRGAGELLGEDQSG 973


>gi|85705340|ref|ZP_01036439.1| transcription-repair coupling factor [Roseovarius sp. 217]
 gi|85670213|gb|EAQ25075.1| transcription-repair coupling factor [Roseovarius sp. 217]
          Length = 1150

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 141/398 (35%), Positives = 224/398 (56%), Gaps = 21/398 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI+D+L D+   + M R++ GDVG GKT VA+ A  AA   G Q  ++AP
Sbjct: 593 PYQETDDQLHAIEDVLSDLGSGSPMDRLICGDVGFGKTEVAMRAAFAAAMTGLQVAVIAP 652

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+      +   + V  ++  +      K  + ++ G+A I++GTHAL    
Sbjct: 653 TTLLARQHYQEFASRFRGFPVNVRPLSRFVSAGDAAKTRDAMSRGEADIVVGTHALLAKG 712

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ RFGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 713 IKFKNLGLLIIDEEQRFGVAHKERLKQLRSDVHVLTLTATPIPRTLQLSLSGVRDLSIIG 772

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  E      +E 
Sbjct: 773 TPPVDRLAIRTY---VSEFDSVTVR-EALLREHYRGGQSFYVVPRISDLPE------IED 822

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F        + + I HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +II 
Sbjct: 823 FLKTQVPEVTYV-IAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIIH 881

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGL+QL+Q+RGRVGR +  +   L   P  PL+  +  RL VL + +    GF +A
Sbjct: 882 RADMFGLSQLYQIRGRVGRSKTRAYAYLTTKPRAPLTPGAEKRLRVLGSLDTLGAGFTLA 941

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 942 SQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 977


>gi|283783133|ref|YP_003373887.1| transcription-repair coupling factor [Gardnerella vaginalis 409-05]
 gi|283441749|gb|ADB14215.1| transcription-repair coupling factor [Gardnerella vaginalis 409-05]
          Length = 1202

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 136/428 (31%), Positives = 223/428 (52%), Gaps = 17/428 (3%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W  + A+ +    E+    I L   R+Q +   G   + +    +++    P+  T  Q
Sbjct: 607  DWAQTKAKAKKHVHEIAENLIKLYSARQQSR---GFAFSKDTPWQKELEDAFPYQETADQ 663

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM     M R++ GDVG GKT +AL A   AV+   Q V++ P  +L QQH
Sbjct: 664  LTTIDEVKADMENPIPMDRLICGDVGFGKTEIALRAAFKAVQDSKQVVVLVPTTLLVQQH 723

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE      +   + V  ++         + L  +  G   ++IGTH L   SI++  L L
Sbjct: 724  YETFTNRFEGFPVKVAAMSRFQTSKEIEETLAGLQDGSIDVVIGTHKLLNPSIKFKDLGL 783

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 784  VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 843

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T +   +   +V   +K  L  G + +++  ++E     +  SV  +   L       
Sbjct: 844  VLTYVGAYDN-SQVAACIKRELLRGGQVFYVHNRVE-----DISSVASKIQELVPDV--R 895

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +AI HG+M +   ++V+  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH
Sbjct: 896  VAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 955

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY P  P+++ S+ RLS +        GF +A +DL+ R  G 
Sbjct: 956  QLRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQHTALGSGFDVAMKDLELRGTGN 1015

Query: 633  ILGIKQSG 640
            +LG +QSG
Sbjct: 1016 LLGDEQSG 1023


>gi|224373507|ref|YP_002607879.1| transcription-repair coupling factor [Nautilia profundicola AmH]
 gi|223589861|gb|ACM93597.1| transcription-repair coupling factor [Nautilia profundicola AmH]
          Length = 974

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 146/425 (34%), Positives = 224/425 (52%), Gaps = 29/425 (6%)

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           IP+N EG   ++ +   PF  T  Q   I DIL D   K  M R+L GDVG GKT VA++
Sbjct: 450 IPLNFEG--VREFIAKAPFVHTPDQAKTINDILDDFKTK-IMDRLLSGDVGFGKTEVAMV 506

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           A      +G Q  ++AP  IL  QH+E  K+  ++T I +  +        +++ LE++ 
Sbjct: 507 ASFVVANSGYQVAVIAPTTILVNQHFESFKERFKDTDIKIAKLDRFTSSKEKKEILEKVK 566

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            G+  III THA    +I+Y  L LVI+DE+H+FGV+Q+ KL + +   H L M+ATPIP
Sbjct: 567 TGEIDIIISTHAGL--NIEYKNLGLVIIDEEHKFGVKQKEKLKEISKNVHTLYMSATPIP 624

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICP 490
           RTL +       IS +   P G++  KT +   N   I EVI R    L  G + ++I  
Sbjct: 625 RTLNMALSQVKSISTLETAPKGKQSTKTFVKEWNENLIKEVILR---ELRRGGQIFYIYN 681

Query: 491 QIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            I   E+K+   + ++             I ++H +++    E  +  F  G   L + T
Sbjct: 682 NIAYIEQKKKELQKILPDL---------RILVLHAKLTPAQIEKGLVDFIAGKYDLALTT 732

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG--EEISSCILLYHPPLSKNSYT 606
           T++E GI + + + +I+ENA+ FG+A LHQ+RGRVGRG  E  +  ++     LS+++  
Sbjct: 733 TIVESGIHIPNVNTVIVENADKFGIADLHQIRGRVGRGKHEGYAYFLVKNKDELSEDAKK 792

Query: 607 RLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIAR 660
           RL  L+       G ++A  DL+ R  G ILG +QSG  K   + +    L D+L E++ 
Sbjct: 793 RLLALEENSFLGSGQVLAMRDLEIRGGGNILGAEQSGQIKGVGYSMYVKMLEDTLKELSG 852

Query: 661 KDAKH 665
           K  K 
Sbjct: 853 KKVKE 857


>gi|227501542|ref|ZP_03931591.1| possible transcription-repair coupling factor [Corynebacterium
            accolens ATCC 49725]
 gi|227077567|gb|EEI15530.1| possible transcription-repair coupling factor [Corynebacterium
            accolens ATCC 49725]
          Length = 1213

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 132/429 (30%), Positives = 220/429 (51%), Gaps = 19/429 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G     +     ++  N PF  T+ Q 
Sbjct: 588  DWKNTKKKARAAVREIAGELVDLYAKRQAAP--GHQFAPDNPWQAEMEDNFPFVETEDQM 645

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  + +DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH+
Sbjct: 646  LAIDAVKEDMESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGTQVAVLVPTTLLAQQHF 705

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + + +++    +    +  + +A G   I++GTH L Q  + +  L L+
Sbjct: 706  DTFSERMAGFPVKMAVLSRFTSKKEATEIFKGLADGSIDIVVGTHRLLQTGVHWKNLGLI 765

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +     +  VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 766  VVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 825

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
             T +       +V   ++  L    + ++I  ++   EKK    R +V           +
Sbjct: 826  LTYVGAYED-KQVAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPE---------A 875

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             I + HG+M++   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QL
Sbjct: 876  RIVVAHGQMNEDVLEKTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 935

Query: 577  HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G
Sbjct: 936  HQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 995

Query: 632  EILGIKQSG 640
             +LG +QSG
Sbjct: 996  NVLGAQQSG 1004


>gi|298253895|ref|ZP_06977482.1| transcription-repair coupling factor [Gardnerella vaginalis 5-1]
 gi|297532038|gb|EFH71013.1| transcription-repair coupling factor [Gardnerella vaginalis 5-1]
          Length = 1202

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 136/428 (31%), Positives = 223/428 (52%), Gaps = 17/428 (3%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W  + A+ +    E+    I L   R+Q +   G   + +    +++    P+  T  Q
Sbjct: 607  DWAQTKAKAKKHVHEIAENLIKLYSARQQSR---GFAFSKDTPWQKELEDAFPYQETADQ 663

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM     M R++ GDVG GKT +AL A   AV+   Q V++ P  +L QQH
Sbjct: 664  LTTIDEVKADMENPIPMDRLICGDVGFGKTEIALRAAFKAVQDSKQVVVLVPTTLLVQQH 723

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE      +   + V  ++         + L  +  G   ++IGTH L   SI++  L L
Sbjct: 724  YETFTNRFEGFPVKVAAMSRFQTSKEIEETLAGLQDGSIDVVIGTHKLLNPSIKFKDLGL 783

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 784  VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 843

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T +   +   +V   +K  L  G + +++  ++E     +  SV  +   L       
Sbjct: 844  VLTYVGAYDN-SQVAACIKRELLRGGQVFYVHNRVE-----DISSVASKIQELVPDV--R 895

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +AI HG+M +   ++V+  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH
Sbjct: 896  VAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 955

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY P  P+++ S+ RLS +        GF +A +DL+ R  G 
Sbjct: 956  QLRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQHTALGSGFDVAMKDLELRGTGN 1015

Query: 633  ILGIKQSG 640
            +LG +QSG
Sbjct: 1016 LLGDEQSG 1023


>gi|298528164|ref|ZP_07015568.1| transcription-repair coupling factor [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511816|gb|EFI35718.1| transcription-repair coupling factor [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1144

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 137/406 (33%), Positives = 216/406 (53%), Gaps = 13/406 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ M  Q K   G   +   ++ Q+      F  T  QE AI++++QDM     M R++ 
Sbjct: 567 LVDMYAQRKVVKGYSYSPPEELYQEFANTFGFQETPDQEQAIREVMQDMESDEPMDRLVC 626

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV+ G Q  ++ P  +LA+QHY+   +  Q+  I V +++  +
Sbjct: 627 GDVGFGKTEVAMRAAFRAVQDGKQVALLCPTTVLAEQHYQNFVQRMQDFAINVRMLSRFV 686

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
           P+  ++  LE    G+  I+IGTH +    +   +L L+I+DE+ RFGV+ + KL Q   
Sbjct: 687 PRNRQKIILEGARKGEVDILIGTHRILSQDVILPRLSLMILDEEQRFGVRHKEKLKQYRQ 746

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL +TATPIPRTL L+  G   +S I   P  RKP+++ II  +R D +   L+  L
Sbjct: 747 NIDVLTLTATPIPRTLQLSVSGIRTLSVIETPPLDRKPVESSIIERDR-DFLRHALQREL 805

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
               + +W+  +++        SV+E    L     + + + HG+M +   E  M  F +
Sbjct: 806 DRQGQVFWVYNRVQ-----GLESVMEYVQDLMPE--ARVDMAHGQMPERILEENMHRFWH 858

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
               +L+ T +IE G+D   A+ +I++ A  FGL QL+QLRGRVGR +E +    +    
Sbjct: 859 HEIDILVCTAIIESGLDFPRANTLIVDQAHMFGLGQLYQLRGRVGRSQEQAYAYFIVPSV 918

Query: 599 -PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
             L + S  R+ ++ + +    GF +A EDL+ R  G ILG  QSG
Sbjct: 919 RELGEKSRKRMQIILDMDYLGAGFQVAMEDLRLRGAGNILGEVQSG 964


>gi|120610265|ref|YP_969943.1| transcription-repair coupling factor [Acidovorax citrulli AAC00-1]
 gi|120588729|gb|ABM32169.1| transcription-repair coupling factor [Acidovorax citrulli AAC00-1]
          Length = 1163

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 151/422 (35%), Positives = 225/422 (53%), Gaps = 29/422 (6%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            ++   +  F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   AV  G 
Sbjct: 601  EQFANDFGFEETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGK 660

Query: 323  QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEII---TGNMPQAHRRKALERIAHGQAHI 378
            Q   +AP  +LA+QHY+  + ++++    I E+    +G    A    A++ I  G   I
Sbjct: 661  QVAFLAPTTLLAEQHYQTLVDRFSKWPVKIAEVSRFRSGKEITA----AIKGIGDGTVDI 716

Query: 379  IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            ++GTH L  +S +++ L L+I+DE+HRFGV+ + ++ Q      VL +TATPIPRTL + 
Sbjct: 717  VVGTHKLLSESTKFHNLGLLIIDEEHRFGVRHKEQMKQLRAEVDVLTLTATPIPRTLGMA 776

Query: 439  SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKE 497
              G  D+S I   P  R  IKT +   N    VI E +   L  G + Y++  ++E    
Sbjct: 777  LEGLRDLSVIATAPQRRLAIKTFV--RNEGTGVIREAVLRELKRGGQCYFLHNEVE---- 830

Query: 498  SNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                ++  R   L E    + IA+ HG+M + + E VM  F      +L+ +T+IE GID
Sbjct: 831  ----TIENRRQKLEEILPEARIAVAHGQMPERELEKVMRDFVAQRYNILLCSTIIETGID 886

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNT 614
            V  A+ II+  A+ FGLAQLHQLRGRVGR    +   L+      L+K +  RL  ++  
Sbjct: 887  VPTANTIIMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDVDGLTKQAAQRLDAIQQM 946

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            E+   GF +A  DL+ R  GE+LG  QSG    L    +L++ +L  A K  K    ++P
Sbjct: 947  EELGSGFYLAMHDLEIRGAGEVLGESQSG--NMLEVGFQLYNEMLAEAVKSLK--AGKEP 1002

Query: 672  DL 673
            DL
Sbjct: 1003 DL 1004


>gi|220930453|ref|YP_002507362.1| transcription-repair coupling factor [Clostridium cellulolyticum
           H10]
 gi|220000781|gb|ACL77382.1| transcription-repair coupling factor [Clostridium cellulolyticum
           H10]
          Length = 1174

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 212/378 (56%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q   I +I +DM  +  M R+L GDVG GKT VA+ A+  AV  G Q   +AP
Sbjct: 625 PYQETDDQLKCIDEIKKDMESEGLMDRLLCGDVGYGKTEVAIRAVFKAVMDGKQVAYLAP 684

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQ YE  K    +  + V++++     A ++K ++ +  G   I+IGTH L Q  
Sbjct: 685 TTILAQQLYENFKTRMNDFPVTVDVMSRFRTPAEQKKIVKSVKAGNTDILIGTHRLLQKD 744

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+++DE+ RFGV  + KL        VL +TATPIPRTL ++ +G  DIS + 
Sbjct: 745 VEFKDLGLLVIDEEQRFGVTHKEKLKTLKPNVDVLTLTATPIPRTLHMSLVGIRDISVLE 804

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
           + P  R P++T ++  N ++ + + +   ++   + +++  ++   + K    R ++   
Sbjct: 805 DPPEERYPVQTYVMEYN-MELIRDGIIREMARDGQVFYMYNRVRGIDLKAQEIRKMIP-- 861

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + +A+ HG+M++ + E VM  F NG   +L+ TT+IE G+D+ + + I++E+
Sbjct: 862 -------DARVAVAHGKMNEKELEDVMYGFINGEYDVLVCTTIIESGLDMPNVNTIVVED 914

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+Q+RGRVGR   ++   + Y     LS+ +  RL  +K  TE   GF IA 
Sbjct: 915 ADRMGLSQLYQIRGRVGRSNRLAYAYITYKKDKVLSEVAEKRLQAIKEFTEFGSGFRIAM 974

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +Q G
Sbjct: 975 RDLEIRGAGNLLGSEQHG 992


>gi|313112804|ref|ZP_07798451.1| transcription-repair coupling factor [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624874|gb|EFQ08182.1| transcription-repair coupling factor [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 1157

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 145/455 (31%), Positives = 229/455 (50%), Gaps = 21/455 (4%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWT-SPARERLAYDELLAGQIALLLMRKQFKKE 250
           DLL + + P   E   +     K    EW  + A+ + A +E+    I L   R+Q    
Sbjct: 538 DLLSRYTAPGDEEKVKLA----KLGGAEWQRTRAKVKKATEEMAQELIELYARRRQ---A 590

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            G     +G   +       +  T  Q +A  +I QDM +   M R+L GDVG GKT VA
Sbjct: 591 TGYAFPPDGDWQRDFETRFDYDETDDQLNATAEIKQDMEKGWPMDRLLCGDVGVGKTEVA 650

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           L A    V  G Q  I+AP  +LA QHY  I    +   + VE+++       +++ L  
Sbjct: 651 LRAAFKCVMGGKQCAILAPTTLLAWQHYNTILSRMEAFPVKVEMMSRFRTAKQQKETLRG 710

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           +  G   I++GTH L    ++++ L LVI+DE+ RFGV+ + KL +      +L ++ATP
Sbjct: 711 LQSGSVDIVVGTHRLLSKDVKFHDLGLVIIDEEQRFGVKHKEKLKENFIGVDMLTLSATP 770

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +   G  D+S I + P  R+P++T ++  N +  + E +K  L+ G + Y++  
Sbjct: 771 IPRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDV-ILAEAMKKELARGGQVYYLHN 829

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +++     N  +     + L     + I I HG+M++ +   V     NG   +L+ TT+
Sbjct: 830 RVD-----NIEACAAHVSKLVPG--ARIGIAHGKMTEEELNPVWQHLLNGEIDILVCTTL 882

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRL 608
           IE GIDV + + +IIE+A+  GLAQL+Q+RGRVGR    +     +     L+  +  RL
Sbjct: 883 IETGIDVRNCNTLIIEDADRMGLAQLYQIRGRVGRSGRKAYAYFTFRRDKTLTDIAQKRL 942

Query: 609 SVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           S ++       GF IA  DL+ R  G +LG  Q G
Sbjct: 943 SAIREFTAFGSGFRIAMRDLQIRGAGSLLGHSQHG 977


>gi|213962106|ref|ZP_03390370.1| transcription-repair coupling factor [Capnocytophaga sputigena
           Capno]
 gi|213955112|gb|EEB66430.1| transcription-repair coupling factor [Capnocytophaga sputigena
           Capno]
          Length = 1110

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 206/378 (54%), Gaps = 17/378 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  A  ++  DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P 
Sbjct: 551 YEDTPDQSKATAEVKADMESSKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPT 610

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH++   +  ++  + ++ +        ++  LE +A GQ  IIIGTH +  + +
Sbjct: 611 TVLAFQHFQTFSQRMKDFPVRIDYLNRFRTAKEKKIILEELAKGQLDIIIGTHQIVGEKV 670

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            Y  L L+IVDE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S I  
Sbjct: 671 TYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLSVINT 730

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R PI + ++P N  +EVI + ++  +  G + +++  ++E  +E     +++R   
Sbjct: 731 PPPNRYPIDSQVVPFN--EEVIRDGIRYEIQRGGQVFFMHNRVENIQE--VAGMIQRLLP 786

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 + IAI HG+M     E  M +F  G   +L+ATT+IE G+DV +A+ I I NA 
Sbjct: 787 -----DARIAIGHGQMDGKKLEETMLAFMEGRYDVLVATTIIESGLDVPNANTIFINNAH 841

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNTED---GFLIAEE 623
           +FGL+ LHQ+RGRVGR  + + C  +  PPL   S ++  R+  +    D   G  IA +
Sbjct: 842 NFGLSDLHQMRGRVGRSNKKAFCYFI-TPPLIAMSDDARKRIEAIAQFSDLGSGLNIAMK 900

Query: 624 DLKQRKEGEILGIKQSGM 641
           DL+ R  G++LG +QSG 
Sbjct: 901 DLEIRGAGDLLGGEQSGF 918


>gi|83588954|ref|YP_428963.1| transcription-repair coupling factor [Moorella thermoacetica ATCC
           39073]
 gi|83571868|gb|ABC18420.1| transcription-repair coupling factor [Moorella thermoacetica ATCC
           39073]
          Length = 1183

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 208/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q  AI ++  DM +   M R+L GDVG GKT VA+ A   AV  G Q  ++ P
Sbjct: 625 PYTETPDQLRAIAEVKADMEKPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGMQVAVLVP 684

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE  K       + + +++       ++  +E +  G+  I+IGTH L    
Sbjct: 685 TTILAQQHYETFKARFAPFPVKIAVLSRFCSPREQKVVVEALKRGEVDIVIGTHRLLSSD 744

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L LVI+DE+ RFGV  + KL Q   +  VL MTATPIPRTL ++  G  D+S I 
Sbjct: 745 VNFKNLGLVIIDEEQRFGVAHKEKLKQLRYSVDVLTMTATPIPRTLHMSLAGVRDMSMIE 804

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R P++T ++  N  + V E ++  L  G + + +  ++++         ++RF  
Sbjct: 805 TPPEDRFPVQTYVVEYN-PELVREAIRRELDRGGQVFIVHNRVQD---------IDRFAY 854

Query: 510 LHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             +     + + I HG+M + + E+VM  F +G   +L++TT++E G+D+ +A+ +I++ 
Sbjct: 855 HIQQLVPEARVGIGHGQMGEEELENVMLDFISGRYDVLVSTTIVENGLDIQNANTLIVDE 914

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAE 622
           +++FGLAQL+QLRGRVGR   ++     Y P   L + +  RL+ ++       G+ IA 
Sbjct: 915 SDNFGLAQLYQLRGRVGRTNRLAYAYFTYRPDKVLGEIAEKRLAAIREFTAFGSGYKIAL 974

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G  LG +Q G
Sbjct: 975 RDLQIRGAGNFLGPEQHG 992


>gi|149186684|ref|ZP_01864995.1| transcription-repair coupling factor [Erythrobacter sp. SD-21]
 gi|148829592|gb|EDL48032.1| transcription-repair coupling factor [Erythrobacter sp. SD-21]
          Length = 1163

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 146/436 (33%), Positives = 232/436 (53%), Gaps = 28/436 (6%)

Query: 234 LAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           +AG++  +  ++  KK    P+  V+     + L    +  T  Q+ AI D+L D+    
Sbjct: 570 IAGELMQVAAQRALKK---APVLEVDEPTYNQFLDRFQYEETDDQDRAIADVLSDLESGK 626

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++ GDVG GKT VAL A   A     Q  ++AP  +LA+QH+E  ++      + V
Sbjct: 627 PMDRLVCGDVGFGKTEVALRAAFVAAMNSQQVAVVAPTTLLARQHFENFRQRFSGFPLTV 686

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             ++  +P    ++  E +A G   I++GTHA+     ++ +L LVIVDE+ RFGV  + 
Sbjct: 687 GRLSRLVPAKELKETREGLAKGDVDIVVGTHAILSKQTKFKELGLVIVDEEQRFGVTHKE 746

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           KL Q     H+L +TATPIPRTL +   G  ++S I   P  R  ++T ++     D+++
Sbjct: 747 KLKQLRADVHMLTLTATPIPRTLQMAMTGLRELSTIQTPPVDRLAVRTYVM---EWDDMV 803

Query: 473 ERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528
            R + +L E   G +++ + P+I     S+  ++    + LHE+         HG+M   
Sbjct: 804 MR-EALLREHHRGGQSFIVVPRI-----SDMEAIS---DWLHENVPEVKFVAAHGQMGAG 854

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           + E  M +F  G   +L+ATT++E G+D+  A+ III  A+ FGLAQL+QLRGRVGR + 
Sbjct: 855 EIEERMSAFYEGKYDVLLATTIVESGLDLPSANTIIIHRADIFGLAQLYQLRGRVGRSKL 914

Query: 589 ISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK 643
            +   L Y     LS+ +  RL VL + +    GF +A  DL  R  G +LG +QSG  +
Sbjct: 915 RAYAYLTYEKDVALSEVAEKRLKVLGDLDSLGAGFQLASHDLDIRGAGNLLGDEQSGHIR 974

Query: 644 ---FLIAQPELHDSLL 656
              F + Q  L D++L
Sbjct: 975 EVGFELYQSMLEDAIL 990


>gi|84623030|ref|YP_450402.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84366970|dbj|BAE68128.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 1154

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++
Sbjct: 604 GFPFEETADQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 663

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QHY   +    +  + VE+++        +  LE++A G   +IIGTH L Q
Sbjct: 664 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 723

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S 
Sbjct: 724 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 783

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R  ++T I   +   + E  +R    LS G + Y++   +E        S+V 
Sbjct: 784 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 832

Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               L E    + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ II
Sbjct: 833 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 892

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
           I  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF 
Sbjct: 893 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRAMTSDAEKRLEAIASMDELGAGFT 952

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 953 LATHDLEIRGAGELLGEDQSG 973


>gi|188990859|ref|YP_001902869.1| Transcription-repair coupling factor (TRCF). [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167732619|emb|CAP50813.1| Transcription-repair coupling factor (TRCF) [Xanthomonas campestris
           pv. campestris]
          Length = 1156

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++
Sbjct: 606 GFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 665

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QHY   +    +  + VE+++        +  LE++A G   +IIGTH L Q
Sbjct: 666 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 725

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S 
Sbjct: 726 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 785

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R  ++T I   +   + E  +R    LS G + Y++   +E        S+V 
Sbjct: 786 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 834

Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               L E    + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ II
Sbjct: 835 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 894

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
           I  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF 
Sbjct: 895 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 954

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 955 LATHDLEIRGAGELLGEDQSG 975


>gi|86130975|ref|ZP_01049574.1| transcription-repair coupling factor [Dokdonia donghaensis MED134]
 gi|85818386|gb|EAQ39546.1| transcription-repair coupling factor [Dokdonia donghaensis MED134]
          Length = 1159

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 136/411 (33%), Positives = 220/411 (53%), Gaps = 20/411 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q S  +D+ +DM     M R++ GDVG GKT VA+ A   AV+ G Q  I+ P 
Sbjct: 581 YEDTPDQSSVTEDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAILVPT 640

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH    K+  +   + VE +        +R+ L  +  G   I+IGTH L   ++
Sbjct: 641 TILAYQHARTFKERLKGFPVTVEYLNRFRTAKEKREVLAGLESGAVDIVIGTHQLTSKNV 700

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+++DE+ +FGV  + KL   +     L +TATPIPRTL  + +   D+S IT 
Sbjct: 701 IFKDLGLLVIDEEQKFGVAVKDKLKTISETVDTLTLTATPIPRTLQFSLMAARDLSTITT 760

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R PI++ ++  +  +EVI + +   +  G + ++I  +IE  KE     +++R   
Sbjct: 761 PPPNRYPIESNVVRFS--EEVIRDAVSYEIQRGGQVFFIHNRIENIKE--VAGLIQRLVP 816

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 + + + HG+M     E+ M SF NG   +L++TT+IE G+DV +A+ I I NA 
Sbjct: 817 -----DAKVGVGHGQMEGKALEAKMLSFMNGEFDVLVSTTIIESGLDVPNANTIFINNAN 871

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEE 623
           +FGL+ LHQ+RGRVGR  + + C  +  PP   +++++  R+  L+       GF IA +
Sbjct: 872 NFGLSDLHQMRGRVGRSNKKAFCYFI-TPPYSVMTEDARKRIQALEQFSVLGSGFNIAMK 930

Query: 624 DLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDP 671
           DL+ R  G++LG +QSG      F   Q  L++++ E+   +   +   DP
Sbjct: 931 DLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIDELKEDEFAELYKDDP 981


>gi|58581095|ref|YP_200111.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425689|gb|AAW74726.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 1154

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++
Sbjct: 604 GFPFEETADQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 663

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QHY   +    +  + VE+++        +  LE++A G   +IIGTH L Q
Sbjct: 664 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 723

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S 
Sbjct: 724 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 783

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R  ++T I   +   + E  +R    LS G + Y++   +E        S+V 
Sbjct: 784 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 832

Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               L E    + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ II
Sbjct: 833 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 892

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
           I  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF 
Sbjct: 893 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRAMTSDAEKRLEAIASMDELGAGFT 952

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 953 LATHDLEIRGAGELLGEDQSG 973


>gi|294664095|ref|ZP_06729492.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292606135|gb|EFF49389.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1154

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++
Sbjct: 604 GFPFEETGDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 663

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QHY   +    +  + VE+++        +  LE++A G   +IIGTH L Q
Sbjct: 664 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 723

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S 
Sbjct: 724 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSV 783

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R  ++T I   +   + E  +R    LS G + Y++   +E        S+V 
Sbjct: 784 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 832

Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               L E    + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ II
Sbjct: 833 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 892

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
           I  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF 
Sbjct: 893 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 952

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 953 LATHDLEIRGAGELLGEDQSG 973


>gi|237751833|ref|ZP_04582313.1| ATP-dependent DNA recombinase RecG [Helicobacter bilis ATCC 43879]
 gi|229373199|gb|EEO23590.1| ATP-dependent DNA recombinase RecG [Helicobacter bilis ATCC 43879]
          Length = 614

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 160/438 (36%), Positives = 224/438 (51%), Gaps = 45/438 (10%)

Query: 225 RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
           +E L + E+      L   + QF+ +     ++E       L+ +PFS T +Q+ AIKDI
Sbjct: 175 QEALKFIEIFVYTQRLRKKKTQFRSKFRCNGDLES-----FLKTLPFSLTNAQKEAIKDI 229

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
            +D+  +    RI+ GDVG GKT+V L ++  A     ++++MAP  ILA+Q +E  KKY
Sbjct: 230 QEDLKNEFACRRIVMGDVGCGKTMVILASVILAYPQ--KSILMAPTTILAKQLFEEAKKY 287

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                 I  + + N  +  R+K LE         IIGTHAL   S       LV+ DEQH
Sbjct: 288 LPKHINISFVSSSNAKE--RKKPLE------GDFIIGTHALLYRSGDLTDFALVMTDEQH 339

Query: 405 RFGVQQRLKLTQ--------KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           RFG   R KL Q          T PH +  +ATPIPRT+ +     +  S I E P  +K
Sbjct: 340 RFGTNARSKLEQMLEGKDEHGRTKPHNIQFSATPIPRTMAMLKNNVVSFSFIKELPF-KK 398

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER------FNSL 510
            I T II  +    +IE ++  L++G +   I P+IEE  ES  + + +       + SL
Sbjct: 399 DIDTRIIDKSGFQRLIEHIRTELTKGHQIAIIYPRIEEADESKEKPIKDSRYAPIPYMSL 458

Query: 511 HE-------HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +       HF    +  HGR  D +KE V++ F N    +L+ATT+IEVGI +   SII
Sbjct: 459 KDAESYWIKHFQHVFST-HGR--DKEKEDVLEQFANTESAILLATTMIEVGISLPKLSII 515

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +I  AE  GLA LHQLRGRV R      C L  H   ++    RL     T +GF IAE 
Sbjct: 516 VIVGAERLGLASLHQLRGRVSRNGLKGYCYLYTHQIQNE----RLIRFSKTLNGFDIAEL 571

Query: 624 DLKQRKEGEIL-GIKQSG 640
           DL+ R  G++L GI QSG
Sbjct: 572 DLEYRNSGDLLDGILQSG 589


>gi|169347359|ref|ZP_02866297.1| hypothetical protein CLOSPI_00074 [Clostridium spiroforme DSM 1552]
 gi|169293976|gb|EDS76109.1| hypothetical protein CLOSPI_00074 [Clostridium spiroforme DSM 1552]
          Length = 1141

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 211/378 (55%), Gaps = 17/378 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T+ Q  ++K+I +DM +   M R+L GDVG GKT VAL A+  A+    Q   + P 
Sbjct: 601 YELTEDQVRSVKEIKEDMEKPQPMDRLLCGDVGFGKTEVALRAVFKAILGNKQVAFLCPT 660

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            IL+ QHY+ +    +N  + V ++        + + L+ +  G   +++GTH +    +
Sbjct: 661 TILSMQHYKTMLDRFENFPVKVALLNRFTSTKQKNQILKDLKEGNIDLLVGTHRILSKDV 720

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  + L+ +DE+ RFGV+Q+ K+ +      VL ++ATPIPRTL ++ +G   +S+I  
Sbjct: 721 EFKDIGLLCIDEEQRFGVKQKEKIKEYRKTIDVLTLSATPIPRTLQMSLMGIRGLSQIET 780

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R+P++T +I  N   I ++IER    L+   + +++       + SN  +  ++  
Sbjct: 781 PPKNRQPVQTYVIEKNDVLIKQIIER---ELARDGQVFYL-----HNRTSNIANTADKIG 832

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            +     + + + HG+M   + E VM  F N    +LI TT+IE GID+ +A+ II+ENA
Sbjct: 833 RMVP--GAKVVVGHGKMDKNEIEDVMMRFVNKEYNVLICTTIIETGIDIPNANTIIVENA 890

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEE 623
           + FGL+QL+Q++GRVGR    +   LLY+P   L++ +  RL  +K  TE   G+ IA  
Sbjct: 891 DKFGLSQLYQIKGRVGRSNRGAYAYLLYNPSKVLTEEASKRLKAIKEFTELGSGYKIAMR 950

Query: 624 DLKQRKEGEILGIKQSGM 641
           DL  R  G+ILG  QSG 
Sbjct: 951 DLAIRGAGDILGGTQSGF 968


>gi|222111676|ref|YP_002553940.1| transcription-repair coupling factor [Acidovorax ebreus TPSY]
 gi|221731120|gb|ACM33940.1| transcription-repair coupling factor [Acidovorax ebreus TPSY]
          Length = 1167

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 141/385 (36%), Positives = 203/385 (52%), Gaps = 17/385 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++   +  F  T  Q++AI  ++QDM     M R++ GDVG GKT VAL A   AV  G 
Sbjct: 604 EQFANDFGFEETADQKAAIHAVVQDMISPRPMDRLVCGDVGFGKTEVALRACFVAVAGGK 663

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q   +AP  +LA+QHY  +        + V  ++          A++ IA G   I++GT
Sbjct: 664 QVAFLAPTTLLAEQHYRTLSDRFSKWPVKVAEVSRFRSGKEITAAVKGIADGTVDIVVGT 723

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L  +S Q+  L L+I+DE+HRFGV+ +  + Q      VL +TATPIPRT+ +   G 
Sbjct: 724 HKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKQFRAEVDVLTLTATPIPRTMGMALEGL 783

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFR 501
            D+S I   P  R  IKT +   N    VI E +   L  G + Y++  ++E        
Sbjct: 784 RDLSVIATAPQRRLAIKTFV--RNEGTGVIREAVLRELKRGGQCYFLHNEVE-------- 833

Query: 502 SVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           ++  R   L E    + IA+ HG+M + + E VM  F      +L+ +T+IE GIDV  A
Sbjct: 834 TIENRRQKLEEILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPTA 893

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED-- 616
           + III  A+ FGLAQLHQLRGRVGR    +   L+      L+K +  RL  ++  E+  
Sbjct: 894 NTIIISRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIDGLTKQAQQRLDAIQQMEELG 953

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640
            GF +A  DL+ R  GE+LG  QSG
Sbjct: 954 SGFYLAMHDLEIRGAGEVLGESQSG 978


>gi|121595462|ref|YP_987358.1| transcription-repair coupling factor [Acidovorax sp. JS42]
 gi|120607542|gb|ABM43282.1| transcription-repair coupling factor [Acidovorax sp. JS42]
          Length = 1164

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 141/385 (36%), Positives = 203/385 (52%), Gaps = 17/385 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++   +  F  T  Q++AI  ++QDM     M R++ GDVG GKT VAL A   AV  G 
Sbjct: 601 EQFANDFGFEETADQKAAIHAVVQDMISPRPMDRLVCGDVGFGKTEVALRACFVAVAGGK 660

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q   +AP  +LA+QHY  +        + V  ++          A++ IA G   I++GT
Sbjct: 661 QVAFLAPTTLLAEQHYRTLSDRFSKWPVKVAEVSRFRSGKEITAAVKGIADGTVDIVVGT 720

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L  +S Q+  L L+I+DE+HRFGV+ +  + Q      VL +TATPIPRT+ +   G 
Sbjct: 721 HKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKQFRAEVDVLTLTATPIPRTMGMALEGL 780

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFR 501
            D+S I   P  R  IKT +   N    VI E +   L  G + Y++  ++E        
Sbjct: 781 RDLSVIATAPQRRLAIKTFV--RNEGTGVIREAVLRELKRGGQCYFLHNEVE-------- 830

Query: 502 SVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           ++  R   L E    + IA+ HG+M + + E VM  F      +L+ +T+IE GIDV  A
Sbjct: 831 TIENRRQKLEEILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPTA 890

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED-- 616
           + III  A+ FGLAQLHQLRGRVGR    +   L+      L+K +  RL  ++  E+  
Sbjct: 891 NTIIISRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIDGLTKQAQQRLDAIQQMEELG 950

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640
            GF +A  DL+ R  GE+LG  QSG
Sbjct: 951 SGFYLAMHDLEIRGAGEVLGESQSG 975


>gi|294340382|emb|CAZ88763.1| Transcription-repair coupling factor (TRCF) (ATP-dependent helicase
            mfd) [Thiomonas sp. 3As]
          Length = 1160

 Score =  210 bits (534), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 151/426 (35%), Positives = 225/426 (52%), Gaps = 25/426 (5%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   AV  G Q  ++AP 
Sbjct: 608  FEETPDQAAAIHAVVQDMISPKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPT 667

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QH E  +    +  + +  ++          AL+ +A G   I+IGTH L   ++
Sbjct: 668  TLLAEQHCETFRNRFADWPVRIAEMSRFRSTKEISAALDGLARGTVDIVIGTHKLLSPTV 727

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++ +L LVIVDE+HRFGV+ +  L     +  +L +TATPIPRTL +   G  D+S I  
Sbjct: 728  KFDRLGLVIVDEEHRFGVRHKEALKAMRASVDLLTLTATPIPRTLGMALEGLRDLSVIAT 787

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  IKT +    R +      + +L E   G + Y++  ++E        ++  R 
Sbjct: 788  APQKRLAIKTFV----RSESGAVMREAILREIKRGGQVYFLHNEVE--------TIENRR 835

Query: 508  NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              L E    + I I HG+M + D E VM  F      +L+ TT+IE GIDV  A+ I++ 
Sbjct: 836  RQLEELVPEARIEIAHGQMHERDLERVMRDFHAQRFNILLCTTIIETGIDVPSANTIVMA 895

Query: 567  NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621
             A+ FGLAQLHQLRGRVGR    +   LL      L+K +  RL  ++  E+   GF +A
Sbjct: 896  RADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDVQSLTKQASQRLEAIQQMEELGSGFYLA 955

Query: 622  EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
              DL+ R  GE+LG +QSG  + +  Q  L++ +L  A K  +    ++PDL +  G + 
Sbjct: 956  MHDLEIRGAGEVLGEQQSGNMQEIGFQ--LYNDMLGEAVKALR--AGREPDLLNPLGVTT 1011

Query: 682  RILLYL 687
             I L++
Sbjct: 1012 EINLHV 1017


>gi|153854681|ref|ZP_01995931.1| hypothetical protein DORLON_01929 [Dorea longicatena DSM 13814]
 gi|149752785|gb|EDM62716.1| hypothetical protein DORLON_01929 [Dorea longicatena DSM 13814]
          Length = 1126

 Score =  210 bits (534), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 209/371 (56%), Gaps = 15/371 (4%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q  AI+ + +DM     M R++ GDVG GKT VA+ A   AV+   Q V + P  ILAQ
Sbjct: 568 DQMMAIEAVKKDMESHKIMDRLVCGDVGFGKTEVAIRAAFKAVQESKQVVYLVPTTILAQ 627

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY    +  ++  + ++++      A ++K +E    G   IIIGTH +  + +++  L
Sbjct: 628 QHYRTFVQRMKDFPVRIDLMCRFRTPAQQKKTVEDAKKGLVDIIIGTHRVLSEDMKFKDL 687

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L+I+DE+ RFGVQ + K+ +      VL +TATPIPRTL ++ +G  D+S + E P  R
Sbjct: 688 GLLIIDEEQRFGVQHKEKIKKLKENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPNDR 747

Query: 456 KPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            PI+T ++  N  DE++ E ++   +   + Y++  ++E+  E     V      L    
Sbjct: 748 MPIQTYVMEYN--DEMVREAIERECARQGQVYYVYNRVEDIDE-----VAGHVQKLVPDL 800

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           T  +A  HG+M + + E +M  F NG   +L++TT+IE G+D+ +A+ +II +A+  GL+
Sbjct: 801 T--VAYAHGQMREHELERIMYDFINGEIDVLVSTTIIETGLDISNANTMIIHDADRLGLS 858

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QL+QLRGRVGR   ++   LLY     L + +  RL+ ++   D   GF IA  DL+ R 
Sbjct: 859 QLYQLRGRVGRSNRMAYAFLLYRRDKMLKEVAEKRLAAIREFTDLGSGFKIAMRDLEIRG 918

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 919 AGNLLGAEQHG 929


>gi|15892836|ref|NP_360550.1| transcription-repair coupling factor [Rickettsia conorii str.
           Malish 7]
 gi|81854092|sp|Q92H58|MFD_RICCN RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|15620021|gb|AAL03451.1| transcription-repair coupling factor [Rickettsia conorii str.
           Malish 7]
          Length = 1122

 Score =  210 bits (534), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 151/468 (32%), Positives = 254/468 (54%), Gaps = 38/468 (8%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           +IAL L++   K+++    +VE  + +  K   N PFS T+ Q  AI DI +D+     M
Sbjct: 541 EIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAINDIKEDLRNGMLM 600

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346
            R++ GDVG GKT VA+ A+    ++      Q  ++ P  IL  QH+    E  K +  
Sbjct: 601 DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGL 660

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           N + +  +I+    +  R +    +  G+ +IIIGTH+L   +I+++ L L+I+DE+  F
Sbjct: 661 NIKQLSSVISSKEAKIIRSE----LESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHF 716

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  + T ++P  
Sbjct: 717 GVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVHTSVMP-- 774

Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             D VI R   +L E   G +++++ P+I++        + ++   +    +  IA  +G
Sbjct: 775 -YDPVIIR-DALLREHFRGGRSFYVVPRIKD-----IEDIAKQLKQIVPELSYKIA--YG 825

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M+    + VM  F  G   +L++TT+IE GID+ +A+ +II NA+  GL+QL+QLRGR+
Sbjct: 826 KMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLYQLRGRI 885

Query: 584 GRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQ 638
           GRG+      L    H  ++ +S  RL +++N+     GF IA  D+  R  G ++G +Q
Sbjct: 886 GRGKMRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASRDMDLRGFGNLIGEEQ 945

Query: 639 SGMPKFLIAQPELHDSLLE--IARKDAKHILTQDPDLTSVR-GQSIRI 683
           SG  K +    EL+  +LE  IA    + I+++ P + ++  G S+ I
Sbjct: 946 SGQIKEV--GTELYQEMLEEQIAIFKDESIVSEQPFIPTINLGLSVFI 991


>gi|163753497|ref|ZP_02160621.1| transcription-repair coupling factor [Kordia algicida OT-1]
 gi|161327229|gb|EDP98554.1| transcription-repair coupling factor [Kordia algicida OT-1]
          Length = 1095

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 134/404 (33%), Positives = 216/404 (53%), Gaps = 16/404 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  A +D+  DM  +  M R++ GDVG GKT VA+ A   AV+ G Q  I+ P 
Sbjct: 535 YEDTPDQSKATQDVKADMESERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAILVPT 594

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH++   +  +   I ++ +        R + L+ +  G   I+IGTH L   ++
Sbjct: 595 TILAFQHFKTFSERLKEMPITIDYLNRFRSTKQRNEVLKGLEDGSVDIVIGTHQLVNKAV 654

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+IVDE+ +FGV  + KL         L +TATPIPRTL  + +   D+S IT 
Sbjct: 655 KFKDLGLLIVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLSVITT 714

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R PI+T +I     + + + +   +  G + ++I  +IE  KE     +++R    
Sbjct: 715 PPPNRYPIETHVIRFQE-ETIRDAVSYEIQRGGQVFFIHNRIENIKE--VAGMIQRLVP- 770

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + I I HG+M     E +M +F NG   +L++TT+IE G+DV +A+ I I NA +
Sbjct: 771 ----DAKIGIGHGQMEGKKLEKLMLAFMNGEFDVLVSTTIIESGLDVPNANTIFINNANN 826

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL---KNTEDGFLIAEEDL 625
           FGL+ LHQ+RGRVGR  + + C  +  P   +++++  R++ L        GF IA +DL
Sbjct: 827 FGLSDLHQMRGRVGRSNKKAFCYFITPPDSVMTQDARKRINALVQFSTLGSGFNIAMKDL 886

Query: 626 KQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHI 666
           + R  G++LG +QSG      F   Q  L++++ E+   + K +
Sbjct: 887 EIRGAGDLLGGEQSGFINEIGFDTYQKILNETIEELKENEFKEL 930


>gi|193213782|ref|YP_001994981.1| transcription-repair coupling factor [Chloroherpeton thalassium
           ATCC 35110]
 gi|193087259|gb|ACF12534.1| transcription-repair coupling factor [Chloroherpeton thalassium
           ATCC 35110]
          Length = 1110

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 135/415 (32%), Positives = 227/415 (54%), Gaps = 24/415 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q SAI+ I  DM     M R++ GD G GKT VA+ A   AVE+G Q  ++ P 
Sbjct: 537 FDETPDQMSAIESIKADMEAVAPMDRLICGDAGFGKTEVAMRAAFKAVESGKQVAVLVPT 596

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH+   K   QN  + VE+++  +P+  ++  +  I  G+  I++GTH +    +
Sbjct: 597 TILAHQHFNTFKLRFQNFPMRVEVLSRFVPKKSQKAVIAEIGEGKVDIVVGTHRIVSKDV 656

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+I+DE+  FGV  + KL +   +   L+++ATPIPRTL  + +G  D+S I+ 
Sbjct: 657 KFTDLGLLIIDEEQHFGVAAKEKLREDFPSVDTLVLSATPIPRTLQFSMMGARDLSIIST 716

Query: 451 KPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R+P++TVI       I + I R    +  G + +++  +I         S+ E + 
Sbjct: 717 PPKNRQPVETVIHEFDAEMIKQAIGR---EIGRGGQVFFLHNRI--------NSISEMYE 765

Query: 509 SLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            + + F  + + + HG+M   + E+VM  F      +L++T ++  G+D+ +A+ +II  
Sbjct: 766 LVKKLFPRARVGVAHGQMPTKELEAVMLDFIQKELDVLVSTAIVGSGLDISNANTMIINR 825

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS---KNSYTRLSVLKN-TE--DGFLIA 621
           A+ FGL+ L+QLRGRVGR ++  +   L+ PPLS   +++  RL+V++  TE   GF +A
Sbjct: 826 ADMFGLSDLYQLRGRVGRSDK-KAYAYLFTPPLSTLKQDALQRLAVIEAYTELGSGFSVA 884

Query: 622 EEDLKQRKEGEILGIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DL  R  G +LG +QSG      F + Q  L +++ E+   + ++I  +   L
Sbjct: 885 MRDLDIRGAGNLLGAEQSGFIFDLGFDVYQKILEEAVSELKSTEFQNIFAESERL 939


>gi|289208374|ref|YP_003460440.1| transcription-repair coupling factor [Thioalkalivibrio sp. K90mix]
 gi|288944005|gb|ADC71704.1| transcription-repair coupling factor [Thioalkalivibrio sp. K90mix]
          Length = 1157

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 136/382 (35%), Positives = 204/382 (53%), Gaps = 23/382 (6%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T  Q  AI  +L DM+    M R++ GDVG GKT VA+ A   AV+   Q  ++ 
Sbjct: 605 FPFEETADQLQAIDAVLTDMADTRPMDRVICGDVGFGKTEVAMRAAFVAVQNNRQVAVLV 664

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQH++       +  + +E ++       +   LE +  G+  I+IGTH L Q 
Sbjct: 665 PTTLLAQQHHQNFSDRFADWPVRIESLSRFRSAKQQAAVLEGLKEGKVDIVIGTHKLLQS 724

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           ++ +  L LVIVDE+ RFGV+ +  L +      +L MTATPIPRTL +   G  D+S I
Sbjct: 725 NLDFSNLGLVIVDEEQRFGVRHKEALKRLRAEVDMLTMTATPIPRTLNMALSGLRDLSVI 784

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSV 503
           T  P  R  IKT +   N  D +I+  +  L E   G + Y++  ++   E+     R++
Sbjct: 785 TTPPRERLAIKTFVNEWN--DAIIQ--EACLREIRRGGQVYFVHNEVNTIERMAEQIRAL 840

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +           + I I HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ I
Sbjct: 841 LP---------GARIGIAHGQMRERELEQVMLDFYHRRYNILVCSTIIETGIDVPTANTI 891

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GF 618
           ++  A+  GLAQ+HQLRGRVGR    +   L+  P   +S ++  RL  + + ED   GF
Sbjct: 892 VMNRADKLGLAQMHQLRGRVGRSHHRAYAYLVTPPEKAMSADARKRLEAIASLEDLGVGF 951

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GE+LG +QSG
Sbjct: 952 TLASHDLEIRGAGELLGDEQSG 973


>gi|164688875|ref|ZP_02212903.1| hypothetical protein CLOBAR_02523 [Clostridium bartlettii DSM
           16795]
 gi|164602079|gb|EDQ95544.1| hypothetical protein CLOBAR_02523 [Clostridium bartlettii DSM
           16795]
          Length = 1131

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 145/430 (33%), Positives = 225/430 (52%), Gaps = 21/430 (4%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EWT + A+ +   +++    + L   R+Q K   G   + +    ++     P+  T+ Q
Sbjct: 565 EWTKAKAKVKREIEDMTKDLVELYAKREQIK---GYKFSKDTVWQKEFESMFPYEETEDQ 621

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AIK+  +DM     M R++ GDVG GKT VA+ A   A     Q  I+ P  ILAQQH
Sbjct: 622 LKAIKETKKDMESSKVMDRLICGDVGYGKTEVAIRAAFKACMDQKQVAILVPTTILAQQH 681

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y   K+   N  I VE+++       +R+ +     G   I+IGTH +  D I    L L
Sbjct: 682 YNTFKQRFANYPIRVEVLSRFKTAKQQREIINDARKGLVDILIGTHRIISDDINLPNLGL 741

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           V++DE+ RFGV+ +  L +      VL ++ATPIPRTL ++  G  D+S I E P  R P
Sbjct: 742 VVIDEEQRFGVKHKESLKKIKNTVDVLTLSATPIPRTLHMSLSGIRDMSVIEEPPQERHP 801

Query: 458 IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           + T +       I + IER    ++ G + +++  ++E  +E    S+V+R         
Sbjct: 802 VITYVAEAKESIIQDEIER---EIARGGQVFFVYNRVEHIEE--MASMVQRLVP-----E 851

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + +A+ HGRM+    E+++  F N    +L+ TT++E G+D+ +A+ +II +A+  GLAQ
Sbjct: 852 AKVAVAHGRMTSKTLENIILGFLNKEYDVLVCTTIVETGMDISNANTMIIYDADKMGLAQ 911

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKE 630
           L+QLRGRVGR        L+Y     LS+ +  RL  ++  TE   GF IA  DL+ R  
Sbjct: 912 LYQLRGRVGRSSRQGYAYLMYEKDKVLSEVAEKRLKAIREFTEFGSGFKIAMRDLEIRGA 971

Query: 631 GEILGIKQSG 640
           G ILG +Q G
Sbjct: 972 GNILGSQQHG 981


>gi|302383042|ref|YP_003818865.1| transcription-repair coupling factor [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193670|gb|ADL01242.1| transcription-repair coupling factor [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 1150

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 135/414 (32%), Positives = 219/414 (52%), Gaps = 16/414 (3%)

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           ++  G IAL   R      +G  I     +  +     P+  T  Q +AI D+L+D+ + 
Sbjct: 566 DMAEGLIALAAKRAL---RVGEAITPPHGLFDEFCARFPYDETDDQLNAIGDVLEDLGKG 622

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VA+ A       G Q  I+ P  +LA+QH++   +      I 
Sbjct: 623 VPMDRLICGDVGFGKTEVAIRAAFVVAMTGQQVAIVCPTTLLARQHFKTFSERFAGWPIK 682

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V  ++  +      +    +  G   I++GTHA+  + + +  L LVIVDE+  FGV+ +
Sbjct: 683 VRHLSRMVTARDAAETRAGLKDGSFEIVVGTHAVLSEQVGFKDLGLVIVDEEQHFGVKHK 742

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            KL       H+L +TATPIPRTL +   G  ++S I   P  R  ++T + P + +  V
Sbjct: 743 EKLKSLRADVHLLTLTATPIPRTLQMALSGIREMSIIATPPVDRLAVRTYVAPWDAV-MV 801

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
            E L      G +A+++CP++ +  +      +E F  +       + + HG+MS    E
Sbjct: 802 REALLREKYRGGQAFYVCPRLSDLPD------IEEFLRVQVPEIKFV-VGHGQMSPTQLE 854

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            VM +F +G+  +L++TT++E GID+  A+ +I+  A+ FGLAQLHQ+RGR+GR +  + 
Sbjct: 855 DVMSAFYDGSYDVLVSTTIVESGIDIPTANTLIVHKADMFGLAQLHQIRGRIGRSKARAF 914

Query: 592 CILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             L   P  PL+ ++  RL VL++ ++   GF +A  DL QR  G +LG +QSG
Sbjct: 915 AYLTVDPKRPLTLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNLLGDEQSG 968


>gi|51598876|ref|YP_073064.1| transcription-repair coupling factor [Borrelia garinii PBi]
 gi|51573447|gb|AAU07472.1| transcription-repair coupling factor [Borrelia garinii PBi]
          Length = 1124

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 135/380 (35%), Positives = 210/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P
Sbjct: 580 PYDETPDQITAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  + +E+++  +     ++ L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPVKIEVLSRFIKNNSEKRILKELKSGEIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLTLSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE         +   
Sbjct: 760 IPPKNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEE---------LHYL 807

Query: 508 NSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            +L E  T  + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III
Sbjct: 808 KTLIEKLTPYARIAIIHGKLTGDEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIII 867

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620
            NA  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    D   GF I
Sbjct: 868 NNANKFGLAQLYQLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSDLGAGFKI 927

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A +D++ R  G +LG +Q G
Sbjct: 928 AMKDMEIRGVGNLLGREQHG 947


>gi|91205666|ref|YP_538021.1| transcription-repair coupling factor [Rickettsia bellii RML369-C]
 gi|123388111|sp|Q1RI82|MFD_RICBR RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|91069210|gb|ABE04932.1| Transcription-repair coupling factor [Rickettsia bellii RML369-C]
          Length = 1120

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 144/437 (32%), Positives = 234/437 (53%), Gaps = 31/437 (7%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           +IAL LM+   K+++     +E  + +  K     PF+ T+ Q +AI DI +D+S    M
Sbjct: 539 EIALHLMQIAAKRKLNTTAAIEFDLEEYDKFCAKFPFTETEDQLNAINDIREDLSNGMLM 598

Query: 295 LRILQGDVGSGKTLVALIA--MAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            R++ GDVG GKT VA+ A  M A    E   Q  ++ P  IL  QH+    +  +++ +
Sbjct: 599 DRLICGDVGFGKTEVAMRAAFMVAKSLNENSPQVAVVVPTTILCSQHFARFTERFKDSDL 658

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            ++ ++  +     +     +  G+ +IIIGTH+L     ++  L L+I+DE+  FGV Q
Sbjct: 659 NIKQLSSVVSSKEAKIVRSELESGKINIIIGTHSLLHKVTKFCNLKLLIIDEEQHFGVGQ 718

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  ++T ++P    D 
Sbjct: 719 KEFLKSLKSSTHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMP---FDP 775

Query: 471 VIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           VI R   +L E   G K++++ P+I   E  E   + +V            S  + HG+M
Sbjct: 776 VIIR-DALLHEHFRGGKSFFVVPRINDIEDIEKQLKQIVPEL---------SYKVAHGKM 825

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S    + +M  F  G   +LI+TT+IE GID+ DA+ +II  A+  GL+QL+QLRGR+GR
Sbjct: 826 SPNKIDEIMSEFYAGKFDILISTTIIESGIDIQDANTMIIHKADMLGLSQLYQLRGRIGR 885

Query: 586 GE--EISSCILLYHPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQSG 640
           G+    +   L  H  ++ +S  RL +++N+     GF IA  D+  R  G ++G +QSG
Sbjct: 886 GKMRGYAYLTLPSHKKMTPHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGEEQSG 945

Query: 641 MPKFLIAQPELHDSLLE 657
             + +    EL+  +LE
Sbjct: 946 QIREV--GTELYQEMLE 960


>gi|94495555|ref|ZP_01302135.1| transcription-repair coupling factor [Sphingomonas sp. SKA58]
 gi|94424943|gb|EAT09964.1| transcription-repair coupling factor [Sphingomonas sp. SKA58]
          Length = 1169

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 146/406 (35%), Positives = 224/406 (55%), Gaps = 27/406 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q+ AI D+++D+     M R++ GDVG GKT VAL A   A  AG Q V++ P
Sbjct: 620  PYQETDDQDRAISDVIEDLGAGKPMDRLVCGDVGFGKTEVALRAAFVAAMAGMQVVVICP 679

Query: 330  IGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              +LA+QH+  F+ ++ +   I +  ++  +P    +     +A G   I++GTHAL   
Sbjct: 680  TTLLARQHHMNFVDRF-RGFPIEIGRLSRLVPDKEAKAVKAGLADGSIDIVVGTHALLAK 738

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             I + +L LVIVDE+ RFGV  + +L    T  HVL +TATPIPRTL +   G  ++S I
Sbjct: 739  GIDFKRLGLVIVDEEQRFGVTHKERLKGLKTDVHVLTLTATPIPRTLQMAMSGLRELSVI 798

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
               P  R  ++T ++P    D V+ R + +L E   G +++++ P+I +  E      VE
Sbjct: 799  QTPPVDRLAVRTYVMP---WDGVVIR-EALLREHYRGGQSFFVVPRIADLTE------VE 848

Query: 506  RFNSLHEHFTSSIAII-HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             F  L         I+ HG+MS  D E  M +F +    +L++TT++E G+D+  A+ +I
Sbjct: 849  EF--LRNEVPEVKPIVAHGQMSATDVEERMSAFYDKRYDVLLSTTIVESGLDIPSANTLI 906

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GF 618
            I  A+ FGLAQL+QLRGRVGR  +  +   +  P    ++  +  RL VL + +    GF
Sbjct: 907  IHRADRFGLAQLYQLRGRVGR-SKTRAYAYMTTPANRIITDTAEKRLKVLSDLDTLGAGF 965

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             +A  DL  R  G ++G +QSG  K +    EL+ S+LE A  DAK
Sbjct: 966  QLASHDLDIRGAGNLVGDEQSGHIKEV--GFELYQSMLEDAILDAK 1009


>gi|21232129|ref|NP_638046.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21113878|gb|AAM41970.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 1155

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++
Sbjct: 605 GFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 664

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QHY   +    +  + VE+++        +  LE++A G   +IIGTH L Q
Sbjct: 665 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 724

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S 
Sbjct: 725 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 784

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R  ++T I   +   + E  +R    LS G + Y++   +E        S+V 
Sbjct: 785 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 833

Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               L E    + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ II
Sbjct: 834 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 893

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
           I  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF 
Sbjct: 894 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 953

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 954 LATHDLEIRGAGELLGEDQSG 974


>gi|325916554|ref|ZP_08178820.1| transcription-repair coupling factor Mfd [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537227|gb|EGD08957.1| transcription-repair coupling factor Mfd [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 1155

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++
Sbjct: 605 GFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 664

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QHY   +    +  + VE+++        +  LE++A G   +IIGTH L Q
Sbjct: 665 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 724

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S 
Sbjct: 725 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 784

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R  ++T I   +   + E  +R    LS G + Y++   +E        S+V 
Sbjct: 785 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 833

Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               L E    + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ II
Sbjct: 834 MQRDLAELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 893

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
           I  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF 
Sbjct: 894 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 953

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 954 LATHDLEIRGAGELLGEDQSG 974


>gi|302388692|ref|YP_003824513.1| transcription-repair coupling factor [Thermosediminibacter oceani
           DSM 16646]
 gi|302199320|gb|ADL06890.1| transcription-repair coupling factor [Thermosediminibacter oceani
           DSM 16646]
          Length = 1177

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 208/378 (55%), Gaps = 15/378 (3%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q +AI+++ +DM     M R+L GDVG GKT VAL A   AV    Q  ++ 
Sbjct: 625 FPYEETPDQLTAIEEVKRDMESDKCMDRLLCGDVGYGKTEVALRAAFKAVMDAKQVAVLV 684

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QHY    +      + VE+I+    +A ++  ++ + +G   IIIGTH L Q 
Sbjct: 685 PTTILAEQHYRTFSERFAPFPVRVEVISRFKSKAEQKAIIKDLKNGAIDIIIGTHRLLQK 744

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +++  L L+I+DE+ RFGV  + K+ Q      VL MTATPIPRTL +   G  D+S +
Sbjct: 745 DVKFKDLGLLIIDEEQRFGVSHKEKIKQLKKNVDVLTMTATPIPRTLHMAMTGIRDMSVM 804

Query: 449 TEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
              P  R PI+T ++  +  D +I + +   LS G + Y++  ++    E       +R 
Sbjct: 805 ETPPENRYPIQTYVVEYS--DSLIRDAIMRELSRGGQVYYVYNRVNTIYEE-----AKRL 857

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           ++L     + IA+ HG+M + + E VM  F      +L+ TT+IE G+D+ + + +I+ +
Sbjct: 858 SALVPE--ARIAVAHGQMHENELEEVMMDFYEHRYDVLVCTTIIETGLDIPNVNTLIVIS 915

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
           A+ FGL+QL+QLRGRVGR    +     Y     LS+ +  RL+ +++  +   GF IA 
Sbjct: 916 ADRFGLSQLYQLRGRVGRSSTQAFAYFTYKKDKTLSEAAEKRLAAIRDFTEFGAGFKIAL 975

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G ILG +Q G
Sbjct: 976 RDLEIRGAGNILGTEQHG 993


>gi|188575614|ref|YP_001912543.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188520066|gb|ACD58011.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 1154

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++
Sbjct: 604 GFPFEETADQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 663

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QHY   +    +  + VE+++        +  LE++A G   +IIGTH L Q
Sbjct: 664 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 723

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S 
Sbjct: 724 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 783

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R  ++T I   +   + E  +R    LS G + Y++   +E        S+V 
Sbjct: 784 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 832

Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               L E    + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ II
Sbjct: 833 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 892

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
           I  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF 
Sbjct: 893 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRAMTSDAEKRLEAIASMDELGAGFT 952

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 953 LATHDLEIRGAGELLGEDQSG 973


>gi|167747443|ref|ZP_02419570.1| hypothetical protein ANACAC_02163 [Anaerostipes caccae DSM 14662]
 gi|317471172|ref|ZP_07930543.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA]
 gi|167652805|gb|EDR96934.1| hypothetical protein ANACAC_02163 [Anaerostipes caccae DSM 14662]
 gi|316901387|gb|EFV23330.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA]
          Length = 1175

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/426 (31%), Positives = 226/426 (53%), Gaps = 25/426 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q +AI+D+ +DM     M R++ GDVG GKT VA+ A   AV  G Q   + P
Sbjct: 626  PYEETQDQLNAIEDVKRDMESTKIMDRLICGDVGYGKTEVAIRAAFKAVTNGKQVAYLVP 685

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              ILAQQHY    +  QN  + V +++       +++ +E +  G   ++IGTH L    
Sbjct: 686  TTILAQQHYNTFCERFQNYPMTVRVMSRFCTPREQKETMEGLKKGIVDVVIGTHRLLSKD 745

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            ++Y  L L+I+DE+ RFGV  + K+        VL ++ATPIPRTL ++ +G  D+S + 
Sbjct: 746  VKYKDLGLLIIDEEQRFGVGHKEKIKTMKKDVDVLSLSATPIPRTLHMSLIGIRDMSILE 805

Query: 450  EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
            E P  R+ I+T ++  N   + E + R    ++ G + Y++  ++     +N   +    
Sbjct: 806  EPPHDRRAIQTYVMEYNEELVKEAVHR---EMTRGGQVYYVYNRV-----NNIAEITSEL 857

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              L  +  + +A  HG+M + + E++M  F      +L++TT+IE G+D+ + + +II +
Sbjct: 858  QKLLPN--AKVAFAHGQMRERELENIMMQFMEKEIDVLVSTTIIETGLDIPNVNTMIIHD 915

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
            A   GL+QL+QLRGRVGR    +   L+Y     L + +  RL  ++   D   G+ IA 
Sbjct: 916  ANQLGLSQLYQLRGRVGRSNRNAFAFLMYKRDTLLKETAEKRLQAIREFTDLGSGYKIAM 975

Query: 623  EDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
             DL+ R  G +LG +QSG  +   + +    L+D++L +     K  L++D D  +    
Sbjct: 976  RDLEIRGAGNLLGEEQSGHMEAVGYDLYCKMLNDAVLRL-----KGELSEDTDFDTTLDL 1030

Query: 680  SIRILL 685
            +I   L
Sbjct: 1031 NIDAFL 1036


>gi|66767742|ref|YP_242504.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|66573074|gb|AAY48484.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1155

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++
Sbjct: 605 GFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 664

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QHY   +    +  + VE+++        +  LE++A G   +IIGTH L Q
Sbjct: 665 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 724

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S 
Sbjct: 725 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 784

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R  ++T I   +   + E  +R    LS G + Y++   +E        S+V 
Sbjct: 785 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 833

Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               L E    + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ II
Sbjct: 834 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 893

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
           I  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF 
Sbjct: 894 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 953

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 954 LATHDLEIRGAGELLGEDQSG 974


>gi|29345662|ref|NP_809165.1| transcription-repair coupling factor [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253567649|ref|ZP_04845060.1| transcription-repair coupling factor [Bacteroides sp. 1_1_6]
 gi|29337554|gb|AAO75359.1| transcription-repair coupling factor [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841722|gb|EES69802.1| transcription-repair coupling factor [Bacteroides sp. 1_1_6]
          Length = 1127

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 138/410 (33%), Positives = 217/410 (52%), Gaps = 19/410 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  ++  DM     M R++ 
Sbjct: 526 LIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSKATMEVKADMESDRPMDRLVC 585

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  ++  +     VE ++   
Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRAR 645

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  L+ +  G+  I+IGTH +    +Q+  L L+I+DE+ +FGV  + KL Q   
Sbjct: 646 TAAQSKAVLKGLKEGEVSILIGTHRILGKDVQFKDLGLLIIDEEQKFGVSVKEKLRQLKV 705

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   N  +EVI + +   
Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFN--EEVITDAINFE 763

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + +++  +I    E   + ++ER      H     +AI HG+M     E ++  F
Sbjct: 764 MSRNGQVFFVNNRIANLPE--LKVMIER------HIPDCRVAIGHGQMEPTQLEQIIFDF 815

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 816 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 874

Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PPLS        RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 875 PPLSSLTAEGKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 924


>gi|325106020|ref|YP_004275674.1| transcription-repair coupling factor [Pedobacter saltans DSM 12145]
 gi|324974868|gb|ADY53852.1| transcription-repair coupling factor [Pedobacter saltans DSM 12145]
          Length = 1116

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/402 (33%), Positives = 212/402 (52%), Gaps = 19/402 (4%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K ++G   + +  +  ++  +  +  T  QE A  D+ +DM  ++ M R++ GDVG GKT
Sbjct: 535 KSQVGFAFSPDTYLQNELEASFIYEDTPDQEKATADVKKDMESEHPMDRLVCGDVGFGKT 594

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A   G Q  I+ P  ILA QHY+   +  ++  + ++ I         +  
Sbjct: 595 EVAIRAAFKAATEGKQVAILVPTTILAMQHYKTFSERLKDFPVRIDYINRFKTTKQVKGT 654

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           LE +  G+  I+IGTH L    +++  L L+I+DE+ +FGV  + KL Q       L +T
Sbjct: 655 LEALKEGKVEILIGTHRLVAKDVKFKDLGLLIIDEEQKFGVSVKEKLKQFRANVDTLTLT 714

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKA 485
           ATPIPRTL  + +G  D+S I   P  R+P+ T +   N   I E +E     L    + 
Sbjct: 715 ATPIPRTLHFSLMGARDLSIIQTPPPNRQPVDTELHVFNEKLIKEAVE---FELDREGQV 771

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++I  ++ + ++     ++++         + IAI HG++     E +M  F  G   +L
Sbjct: 772 FFIHNRVADLRQ--LGGLIQKLVP-----KARIAIAHGQLEGDKLEDIMLDFIEGKYDVL 824

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK--- 602
           +ATT+IE G+DV +A+ I+I +A  FGL+ LHQ+RGRVGR  + + C LL  PPLS    
Sbjct: 825 VATTIIEAGLDVPNANTILINHAHMFGLSDLHQMRGRVGRSNKKAFCYLL-SPPLSTLTP 883

Query: 603 NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
            +  RLS ++   D   GF +A  DL  R  G +LG +QSG 
Sbjct: 884 EARKRLSAIEEFSDLGSGFNVAMRDLDIRGSGNLLGAEQSGF 925


>gi|27904769|ref|NP_777895.1| transcription-repair coupling factor [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46396116|sp|Q89AK2|MFD_BUCBP RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|27904167|gb|AAO27000.1| transcription-repair coupling factor [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 697

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 138/382 (36%), Positives = 206/382 (53%), Gaps = 25/382 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF+ T  Q+SAI  +L DM +   M R++ GDVG GKT VA+ A   AV    Q  I+ P
Sbjct: 151 PFTLTPDQDSAINSVLSDMYKSTPMDRLVCGDVGFGKTEVAMRATFLAVCNQKQVAILVP 210

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQH+       +     +EI++    +    + +  +  G  H++IGTH +   +
Sbjct: 211 TTLLAQQHFNNFTLRFKYWSTKIEILSRFQSETKCNEIINNVNIGNVHVLIGTHKILLKN 270

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+IVDE+HRFGV  + ++   +    VL +TATPIPRTL +  +G  D+S I 
Sbjct: 271 LKWKNLGLLIVDEEHRFGVHHKEQIKLISNNIDVLTLTATPIPRTLNMAFVGIRDLSIIA 330

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVV 504
             P  R  +KT +   +    VI   K +L E   G + Y+I   +   E+K+   + +V
Sbjct: 331 TPPKQRLIVKTFVREFSY--TVIR--KAILREILRGGQVYYIYNNVNKIERKKIELKKLV 386

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              N         I I HG++   D ES+M+ F +    +L+ +T+IE GID+ + + II
Sbjct: 387 PEAN---------IRIGHGQLRSTDLESIMNDFYHKRFNVLVCSTIIETGIDIPNVNTII 437

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNTE---DGF 618
           IENA +FGLAQLHQLRGRVGR +  +   LL  P L     ++  R+  + + E     F
Sbjct: 438 IENANNFGLAQLHQLRGRVGRSQHQAYAWLLV-PSLKDIKSDAKKRIDAITSIESFGSCF 496

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  GEILG  QSG
Sbjct: 497 ELANRDLEIRGIGEILGNNQSG 518


>gi|291166313|gb|EFE28359.1| transcription-repair coupling factor [Filifactor alocis ATCC 35896]
          Length = 1124

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 165/542 (30%), Positives = 270/542 (49%), Gaps = 39/542 (7%)

Query: 115 NVFFEGRKITVTGKI------KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSV 168
           N  F+ RK   + KI      KK++N I +    Y+ H +  V    IE       G+  
Sbjct: 456 NDIFQNRKKKQSRKIGKKYDSKKIENFIQLKKGDYVVHETYGVG-QFIEIEQREFDGIKK 514

Query: 169 DLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT-SPARER 227
           D + KI       L V  E ++K  +Q     S  +A+ +     K    +W  S AR +
Sbjct: 515 D-YIKIAYFGGDSLYVPLEQMDK--VQSFIGNSAEQAYKL----SKLGSSDWKKSKARTK 567

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
            A + +    + L  +R+    E G     +    ++     P+  T  Q  AI+++ +D
Sbjct: 568 KAVEAIAQDLVELYAVREN---EKGYSFQEDTVWQREFEDAFPYEETDDQLKAIEEVKRD 624

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           M     M R+L GDVG GKT VA+ A+  A   G Q V + P  ILAQQHY  IK+   N
Sbjct: 625 MESSRVMDRLLCGDVGYGKTEVAIRAIFKACMDGKQVVFLVPTTILAQQHYVTIKERFLN 684

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + V++++         +  + +A G   ++IGTH +  + I+Y  L L++VDE+ RFG
Sbjct: 685 YPLRVDLVSRFKTTKEVNETFDSLAKGSVDVVIGTHKILSEKIKYKNLGLIVVDEEQRFG 744

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465
           V+Q+  + +       L ++ATPIPRTL L+  G  ++S + E P  R PI T +     
Sbjct: 745 VKQKEAIKKMRMNIDCLTLSATPIPRTLHLSLSGIREMSILNEPPQDRHPIVTYVTEAKS 804

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHG 523
           N I + I+R    L+ G + +++  ++E          +++ ++L +     + IA+ HG
Sbjct: 805 NIIADAIDR---ELARGGQVFFVYNRVE---------TIDKIHTLLKELVPDADIAVAHG 852

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M     E +M  F N    +L+ TT+IE G+D+ +A+ +I+ +A+  GL+QL+QLRGRV
Sbjct: 853 QMPSRKLEQIMVDFLNREYDVLVCTTIIETGMDISNANTMIVYDADKMGLSQLYQLRGRV 912

Query: 584 GRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQ 638
           GR  +      +Y     L++ +  RL  ++  TE   GF +A +DL+ R  G +LG  Q
Sbjct: 913 GRSSKQGYAYFMYEKEKVLTEIAEKRLKTIREFTEFGSGFKVAMKDLEIRGAGNLLGESQ 972

Query: 639 SG 640
           SG
Sbjct: 973 SG 974


>gi|118589910|ref|ZP_01547314.1| Mfd, transcription-repair coupling factor [Stappia aggregata IAM
           12614]
 gi|118437407|gb|EAV44044.1| Mfd, transcription-repair coupling factor [Stappia aggregata IAM
           12614]
          Length = 1161

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 132/382 (34%), Positives = 210/382 (54%), Gaps = 25/382 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AI  + +D+S    M R++ GDVG GKT VAL A   A  +G Q  ++ P
Sbjct: 613 PYEETDDQLTAIDAVFEDLSSGRPMDRLVCGDVGFGKTEVALRAAFIAAMSGRQVAVVVP 672

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH++   +      I V   +  +P        + IA G   I++GTHAL   S
Sbjct: 673 TTLLARQHFKTFSERFHGLPINVAHASRLVPTKQLNLTKKGIADGSVDIVVGTHALLGKS 732

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S I 
Sbjct: 733 IEFRDLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLIA 792

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  ++T + P    D ++ R + +L E   G +++++CP++ +        + ER
Sbjct: 793 TPPVDRLAVRTFVSP---FDPLVVR-EALLREHYRGGQSFYVCPRLAD--------IAER 840

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              L        +A+ HG+M   + E VM++F  G   +L++TT++E G+D+  A+ +I+
Sbjct: 841 LEFLENQVPELKVAVAHGQMPPGELEDVMNAFYEGKYNVLLSTTIVESGLDIPTANTLIV 900

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GF 618
             A+ FGLAQL+QLRGRVGR +  +    L+  P    L+  +  RL VL++ E    GF
Sbjct: 901 HRADMFGLAQLYQLRGRVGRSK--TRAYALFTVPANKTLTATAERRLKVLQSLETLGAGF 958

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL  R  G +LG +QSG
Sbjct: 959 QLASHDLDIRGAGNLLGEEQSG 980


>gi|32474124|ref|NP_867118.1| transcription-repair coupling factor [Rhodopirellula baltica SH 1]
 gi|32444661|emb|CAD74663.1| transcription-repair coupling factor [Rhodopirellula baltica SH 1]
          Length = 1181

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 148/478 (30%), Positives = 254/478 (53%), Gaps = 30/478 (6%)

Query: 210  HNPRKAK--DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
            + P+ AK     WT+  +   A    +A +  LL ++ +    +GIP++ + +  ++   
Sbjct: 582  NRPKLAKIGGISWTNQKKAAEAAVTDMADE--LLELQAKRATRLGIPMSPDNEWQRQFDA 639

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q SAI+ +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 640  SFPYLETPDQLSAIEALKIDMEAPRPMDRLICGDVGFGKTEVAMRAAFKAVSSGYQVAVL 699

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +LA+QHY+  ++      + +  ++     A +R+ ++ I  G+A I+IGTH +  
Sbjct: 700  VPTTVLAEQHYQSFRERMAEFPVEIRKLSRFCTPAEQRETVKEIRRGKADIVIGTHRVAS 759

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              +++  L LV++DE+ RFGV  + +L  + +   VL ++ATPIPRTL +  +G  DIS 
Sbjct: 760  KDVEFNNLGLVVIDEEQRFGVAVKERLKTQHSNVDVLTLSATPIPRTLHMALVGVRDISN 819

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKE--SNFRSV 503
            +   PA R  ++T    + R D+ + R  +V  L+ G + Y++  +I +  +  +  +++
Sbjct: 820  LETPPAERMAVET---KVTRWDDKMLRSAIVRELNRGGQMYFVHNRIGDMDDLAARIKAI 876

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            V             I I HG+M +   E VM  F +    +L+ATT+IE G+D+ +A+ +
Sbjct: 877  VPELR---------IGIGHGQMEEGALEQVMVDFIDHKFDMLLATTIIESGLDIPNANTM 927

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618
             I++   +GL+ LHQLRGRVGR +  + C LL  P   L+  +  RL  ++       GF
Sbjct: 928  FIDDGNRYGLSDLHQLRGRVGRYKHQAYCYLLVSPNKRLTPEASKRLRAIEEYSQMGAGF 987

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI---LTQDPDL 673
             I+  DL+ R  G +LG +QSG         E++  LLE A + A+ +   L+ D D+
Sbjct: 988  AISMRDLEIRGAGNLLGSQQSG--HIAAVGYEMYCQLLEDAVRQAQKLPPKLSADVDI 1043


>gi|110598535|ref|ZP_01386804.1| transcription-repair coupling factor [Chlorobium ferrooxidans DSM
           13031]
 gi|110339839|gb|EAT58345.1| transcription-repair coupling factor [Chlorobium ferrooxidans DSM
           13031]
          Length = 1108

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 143/445 (32%), Positives = 237/445 (53%), Gaps = 24/445 (5%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           I L+ +  Q K + G     +    ++   +  F  T  Q  AI ++ +DM   + M R+
Sbjct: 502 INLIKIYAQRKMQSGFAFAADSIFMREFEASFIFEETPDQHRAIVEVKKDMEAPHPMDRL 561

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GD G GKT +A+ A   AVE+  Q  ++ P  ILA QH E   +  +N  I + +++ 
Sbjct: 562 ICGDAGFGKTEIAMRAAFKAVESKKQVAVLTPTTILAHQHAESFTRRFENFPIAIAVLSR 621

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +P+  + + L++I  GQ  I+IGTH L    + +  L L+++DE+  FGV+ + KL ++
Sbjct: 622 FVPRKDQIELLKKIKAGQIDIVIGTHRLVSKDVLFQDLGLLVIDEEQHFGVEVKEKLREQ 681

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERL 475
                 L M+ATPIPRTL  + LG  D+S ++  P  R+P++T+I   +   I   I+R 
Sbjct: 682 FPGVDTLTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQPVETLITDYDTALIQSAIQR- 740

Query: 476 KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
             +  EG + +++  +I   E+ +   R +V          ++ I   HG+M+  + E V
Sbjct: 741 -EIRREG-QVFFLHNRISGLEEVQLTLRELVP---------SARIVFAHGQMAPKELEKV 789

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F      +LI+TT+I  G+D+ +A+ III  A+ FGL+ L+QLRGRVGR +  + C 
Sbjct: 790 MMDFMQKEVDVLISTTIIGSGLDISNANTIIINRADMFGLSDLYQLRGRVGRSDRKAYCY 849

Query: 594 LLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGM---PKFL 645
           L+  P   L +++  RL+V+++ TE   GF IA  DL  R  G +LG +QSG      F 
Sbjct: 850 LITPPLHTLKRDAVQRLAVIESFTELGSGFNIALRDLDIRGAGNLLGAEQSGYIHELGFD 909

Query: 646 IAQPELHDSLLEIARKDAKHILTQD 670
           + Q  L +++ E+      H+   D
Sbjct: 910 LYQKMLEETVAELKSTTFSHLFLTD 934


>gi|229586940|ref|YP_002845441.1| Transcription-repair coupling factor [Rickettsia africae ESF-5]
 gi|228021990|gb|ACP53698.1| Transcription-repair coupling factor [Rickettsia africae ESF-5]
          Length = 1122

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 239/439 (54%), Gaps = 35/439 (7%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           +IAL L++   K+++    +VE  + +  K   N PFS T+ Q  AI DI +D+     M
Sbjct: 541 EIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAINDIKEDLRNGMLM 600

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346
            R++ GDVG GKT VA+ A+    ++      Q  ++ P  IL  QH+    E  K +  
Sbjct: 601 DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGL 660

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           N + +  +I+    +  R +    +  G+ +IIIGTH+L   +I+++ L L+I+DE+  F
Sbjct: 661 NIKQLSSVISSKEAKIIRSE----LKSGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHF 716

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  + T ++P  
Sbjct: 717 GVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVHTSVMP-- 774

Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             D VI R   +L E   G +++++ P+I++        + ++   +    +  IA  +G
Sbjct: 775 -CDPVIIR-DALLREHFRGGRSFYVVPRIKD-----IEDIAKQLKQIVPELSYKIA--YG 825

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M+    + VM  F  G   +L++TT+IE GID+ +A+ +II NA+  GL+QL+QLRGR+
Sbjct: 826 KMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLYQLRGRI 885

Query: 584 GRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQ 638
           GRG+      L    H  ++ +S  RL +++N+     GF IA  D+  R  G ++G +Q
Sbjct: 886 GRGKMRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASRDMDLRGFGNLIGEEQ 945

Query: 639 SGMPKFLIAQPELHDSLLE 657
           SG  K +    EL+  +LE
Sbjct: 946 SGQIKEV--GTELYQEMLE 962


>gi|325107412|ref|YP_004268480.1| transcription-repair coupling factor [Planctomyces brasiliensis DSM
           5305]
 gi|324967680|gb|ADY58458.1| transcription-repair coupling factor [Planctomyces brasiliensis DSM
           5305]
          Length = 1114

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 143/439 (32%), Positives = 236/439 (53%), Gaps = 21/439 (4%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A  +  L   ++ KK I  P +      ++  +  P+  T  Q +AI  I +DM ++  
Sbjct: 537 MAADMIKLQATREAKKGIAYPGD--SHWYEEFEQAFPYEETPDQATAIDSIREDMMRERP 594

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   A+++G QA ++ P  +LA+QHY             +E
Sbjct: 595 MDRLICGDVGYGKTEVAMRAAFRAIDSGKQAAVLVPTTVLAEQHYRSFCARMAEFPYNIE 654

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +++    +  ++  LE +  G   +++GTH +    I++  L LVI+DE+ RFGV+ +  
Sbjct: 655 MLSRFRSKKEQKAILEGLEAGTIDLVVGTHRIVSPDIKFKDLGLVIIDEEQRFGVKAKEM 714

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L +      +L ++ATPIPRTL ++ LG  DIS +   P GR+ I+T I    R D  + 
Sbjct: 715 LKRLRLEVDILTLSATPIPRTLHMSLLGIRDISNLQTPPRGRQAIETRIC---RWDPELI 771

Query: 474 RLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
           R  +V  L+   + Y++  ++ + +E     + E+   +     +   I+HG+MS+ + E
Sbjct: 772 RHAIVRELNRNGQVYFVHNRVYDIEE-----LTEKLQQIVPE--AKFGIVHGQMSESELE 824

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             M +F  G   +L+ATT+IE G+D+ +A+ + I  A+ +GLA +HQLRGRVGR +  + 
Sbjct: 825 KQMVAFVRGKTDVLMATTIIESGLDIPNANTMFIHEADRYGLADMHQLRGRVGRFKHRAY 884

Query: 592 CILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
           C L+      LS  S  RL  ++   +   GF IA  DL+ R  G ILG +QSG     +
Sbjct: 885 CYLVVEEGKVLSTTSTRRLKAIEEYSELGAGFKIAMRDLEIRGAGNILGTEQSG--HISL 942

Query: 647 AQPELHDSLLEIARKDAKH 665
              EL+  LLE A ++ K+
Sbjct: 943 VGYELYCQLLENAVREQKN 961


>gi|309799278|ref|ZP_07693526.1| transcription-repair coupling factor [Streptococcus infantis
           SK1302]
 gi|308117123|gb|EFO54551.1| transcription-repair coupling factor [Streptococcus infantis
           SK1302]
          Length = 538

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 145/388 (37%), Positives = 217/388 (55%), Gaps = 27/388 (6%)

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           M     M R+L GDVG GKT VA+ A   AV    Q V++ P  +LAQQHY   K+  + 
Sbjct: 1   MQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVLAQQHYSNFKERFEQ 60

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + V++++    +  + + LE++  GQ  I+IGTH +    +++  L L+I+DE+ RFG
Sbjct: 61  FAVNVDVLSRFRSKKEQTETLEKLKKGQVDILIGTHRVLSKDVEFADLGLMIIDEEQRFG 120

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           V+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N 
Sbjct: 121 VKHKEALKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEQN- 179

Query: 468 IDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIH 522
            D VI     VL E   G + Y++  +++  EKK S  + ++           +SI  +H
Sbjct: 180 -DRVIR--DAVLREMDRGGQVYYLYNKVDTIEKKVSELQELIPE---------ASIGFVH 227

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H GL+ L+QLRGR
Sbjct: 228 GQMSEIRLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGLSTLYQLRGR 287

Query: 583 VGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIK 637
           VGR   I+   L+Y P   L++ S  RL  +K  TE   GF IA  DL  R  G +LG  
Sbjct: 288 VGRSNRIAYAYLMYRPDKTLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNLLGSS 347

Query: 638 QSGMPKFLIAQPELHDSLLE--IARKDA 663
           QSG    +    EL+  LLE  IA+K+ 
Sbjct: 348 QSGFIDSV--GFELYSQLLEEVIAKKNG 373


>gi|189485430|ref|YP_001956371.1| transcription-repair coupling factor Mfd [uncultured Termite group
           1 bacterium phylotype Rs-D17]
 gi|170287389|dbj|BAG13910.1| transcription-repair coupling factor Mfd [uncultured Termite group
           1 bacterium phylotype Rs-D17]
          Length = 1048

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 233/451 (51%), Gaps = 36/451 (7%)

Query: 259 GKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           G   +K L N  P+  T  Q  AI+DI  D  +   M R++ GDVG GKT V + A   A
Sbjct: 489 GTAWEKELENTFPYDETPGQLKAIEDIKNDFLKPYPMERLVCGDVGYGKTEVVVRAAFKA 548

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           V    Q  I+ P  +LAQQHY           I V +++    +A +++  + + +G   
Sbjct: 549 VHESMQTAILVPTTVLAQQHYNTFCDRLSPFPIKVAVLSRFQTKAKQKEITQDLENGLID 608

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           IIIGTH L Q  +++  L L+++DE+HRFGV+Q+ K+        +L+++ATPIPRTL  
Sbjct: 609 IIIGTHRLLQKDVKFKNLGLLVIDEEHRFGVKQKEKIKSMKKNIDILMLSATPIPRTLSS 668

Query: 438 TSLGDIDISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           +  G  D+S I   P GR PI+T I     N I  +IE     LS   + +++  +IE  
Sbjct: 669 SLSGFRDLSVIETPPFGRLPIETSISLYDENLIKNIIE---AELSRNGQVFYVYNKIE-- 723

Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +++ +  S+ E      + II+G+M   D E +M  F N    +L+ATT+IE G
Sbjct: 724 ------TILTKAASIRELVPGIKLGIIYGQMKAKDIEEIMWKFINMELDVLLATTIIESG 777

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPLSKNSYTRLSVLKN 613
           +D+   + +IIE  E+FGL+QL+QLRGR+GR  + + C L Y    LS  +  RL  ++ 
Sbjct: 778 LDIPSVNTMIIEEVENFGLSQLYQLRGRIGRDRKKAYCYLFYKDKTLSDEAVKRLEAIRE 837

Query: 614 TED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK--HILT 668
             +   GF +A +DL+ R  G IL   Q G  + +    ++   LLE   K  K   + +
Sbjct: 838 FGELGSGFRLALKDLEIRGAGGILSSSQHGFVRDI--GYDMFAKLLEEEGKKVKGDAVES 895

Query: 669 QDP-----DL--------TSVRGQSIRILLY 686
           Q+      DL        T + G+ IRIL Y
Sbjct: 896 QEKKNTVIDLQINALIPPTYIEGEDIRILFY 926


>gi|270293887|ref|ZP_06200089.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275354|gb|EFA21214.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1129

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 136/410 (33%), Positives = 219/410 (53%), Gaps = 19/410 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 531 LIKLYSQRREEKGFQYSSDSFLQRELEASFIYEDTPDQSKATSDVKADMESARPMDRLVC 590

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  K+  +     VE ++   
Sbjct: 591 GDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKERLKGLPCRVEYLSRAR 650

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                +  ++ +A G+ +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 651 TAVQAKAVVKGLAEGEVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQLKV 710

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I   P  R PI+T +   N  +E+I + +   
Sbjct: 711 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFN--EEIIADAVNFE 768

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + +++  +I    E   ++++ER      H     + I HG+M   + E ++  F
Sbjct: 769 MSRNGQVFFVNNRISNLVE--LKAMIER------HIPDCRVCIGHGQMEPAELEKIIFDF 820

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 821 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 879

Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PPLS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 880 PPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 929


>gi|197105082|ref|YP_002130459.1| transcription-repair coupling factor [Phenylobacterium zucineum
           HLK1]
 gi|196478502|gb|ACG78030.1| transcription-repair coupling factor [Phenylobacterium zucineum
           HLK1]
          Length = 1162

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 136/381 (35%), Positives = 211/381 (55%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  AI D+L+D++    M R++ GDVG GKT VAL A      +G Q  ++AP
Sbjct: 613 PYEETEDQLMAIGDVLEDLAGGKPMDRLVCGDVGFGKTEVALRAAFVVAMSGQQVAVVAP 672

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+   +  +   + V  ++  +      +  E +A G+  I++GTHA+    
Sbjct: 673 TTLLARQHYKTFTERFEGWPVKVRRLSRLVTAKEAAETREGLAKGEVEIVVGTHAILSKQ 732

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L LVIVDE+  FGV+ + KL +     H+L +TATPIPRTL ++  G  ++S I 
Sbjct: 733 VSFKNLGLVIVDEEQHFGVKHKEKLKELRADVHLLTLTATPIPRTLQMSLSGIREMSIIA 792

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  ++T I P +   I E + R K     G +AY++ P+I +  E      +ERF
Sbjct: 793 TPPVDRLAVRTYITPWDPVVIREALLREKY---RGGQAYFVAPRINDLPE------LERF 843

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             L E        + HG+M+    E VM +F +G   +L++TT++E G+D+  A+ +II 
Sbjct: 844 --LREQVPEVKFVVGHGQMAPTQLEEVMSAFYDGQYDVLLSTTIVESGLDIPTANTLIIH 901

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK----NSYTRLSVLKNTED---GFL 619
            A+ FGLAQL+QLRGRVGR +  +   L    P  K    ++  RL VL++ ++   GF 
Sbjct: 902 RADMFGLAQLYQLRGRVGRSKSRAYAYLTT--PAEKQITLSAEKRLKVLQSLDNLGAGFQ 959

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL  R  G +LG +QSG
Sbjct: 960 LASHDLDIRGGGNLLGEEQSG 980


>gi|46202166|ref|ZP_00053648.2| COG1197: Transcription-repair coupling factor (superfamily II
           helicase) [Magnetospirillum magnetotacticum MS-1]
          Length = 1131

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 150/436 (34%), Positives = 234/436 (53%), Gaps = 26/436 (5%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           I +   RK  + E  +P   EG +  +     PF+ T+ Q  AI+D + D++    M R+
Sbjct: 554 IGIAAQRKMRQGEALVP--AEG-LYDEFCARFPFAETEDQLRAIEDSIADLASGKPMDRL 610

Query: 298 LQGDVGSGKTLVAL-IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           + GDVG GKT VA+ +A  AA++ G Q  ++ P  +LA+QHY   K+      + VE ++
Sbjct: 611 ICGDVGFGKTEVAMRVAFVAALQ-GLQVAVVVPTTLLARQHYRTFKERFAGLPVRVEQLS 669

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
             +      +    +A G   I++GTHAL    I + +L L+I+DE+  FGV  + +L Q
Sbjct: 670 RLVTAKTASEVKAGVADGSVDIVVGTHALLAKGIGFKRLGLLIIDEEQHFGVAHKERLKQ 729

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                HVL +TATPIPRTL +   G  ++S I   P  R  ++T ++P    D V+ R +
Sbjct: 730 LKADVHVLTLTATPIPRTLQMALSGVKEMSVIATPPIDRLAVRTFVLP---YDPVVLR-E 785

Query: 477 VVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            +L E   G + +++CP++     ++   V ER   L     +++A  HGR++  D E V
Sbjct: 786 SILRERYRGGQVFYVCPRL-----ADIDRVAERLAKLVPEVKTAVA--HGRLAPADLEEV 838

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE--ISS 591
           M +F +    +L++T +IE GID+   + +II  A+ FGL QL+QLRGRVGRG+    + 
Sbjct: 839 MVAFGDKQYDVLLSTNIIESGIDMPSVNTLIIHRADMFGLGQLYQLRGRVGRGKTRGYAY 898

Query: 592 CILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
             L     LSK +  RL V++  +    GF +A  DL  R  G +LG +QSG  + +   
Sbjct: 899 FTLPNDKVLSKAAEKRLQVMQALDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIREVGV- 957

Query: 649 PELHDSLLEIARKDAK 664
            EL+  LLE A   AK
Sbjct: 958 -ELYQQLLEEAVAAAK 972


>gi|294625045|ref|ZP_06703694.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600675|gb|EFF44763.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1154

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++
Sbjct: 604 GFPFEETGDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 663

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QHY   +    +  + VE+++        +  LE++A G   +IIGTH L Q
Sbjct: 664 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 723

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S 
Sbjct: 724 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 783

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R  ++T I   +   + E  +R    LS G + Y++   +E        S+V 
Sbjct: 784 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 832

Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               L E    + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ II
Sbjct: 833 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 892

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
           I  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF 
Sbjct: 893 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 952

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 953 LATHDLEIRGAGELLGEDQSG 973


>gi|219684175|ref|ZP_03539119.1| transcription-repair coupling factor [Borrelia garinii PBr]
 gi|219672164|gb|EED29217.1| transcription-repair coupling factor [Borrelia garinii PBr]
          Length = 1124

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/380 (35%), Positives = 211/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P
Sbjct: 580 PYDETLDQITAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  + +E+++  +     ++ L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPVKIEVLSRFIKNNSEKRILKELKSGEIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLSLSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE         +   
Sbjct: 760 IPPKNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEE---------LHYL 807

Query: 508 NSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            +L E  T  + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III
Sbjct: 808 KTLIEKLTPYARIAIIHGKLTGDEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIII 867

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620
            NA  FGLAQL+QL+GRVGRG + +    LY     L+++S  RL  +    D   GF I
Sbjct: 868 NNANKFGLAQLYQLKGRVGRGSKKAYAYFLYQDSEKLNESSIERLRAITEFSDLGAGFKI 927

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A +D++ R  G +LG +Q G
Sbjct: 928 AMKDMEIRGVGNLLGREQHG 947


>gi|239825634|ref|YP_002948258.1| transcription-repair coupling factor [Geobacillus sp. WCH70]
 gi|239805927|gb|ACS22992.1| transcription-repair coupling factor [Geobacillus sp. WCH70]
          Length = 1177

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 207/378 (54%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I++I +DM     M R+L GDVG GKT VAL A   A+  G Q   + P
Sbjct: 621 PYQETEDQLRSIEEIKRDMESDKPMDRLLCGDVGYGKTEVALRAAFKAIMDGKQVAFLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE +++  Q   I V ++     +  + + ++ +  G   ++IGTH L    
Sbjct: 681 TTILAQQHYETVRERFQGFPINVGLLNRFRTRKQQAETIKGLKDGTIDMVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +Q+  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S I 
Sbjct: 741 VQFKDLGLLIIDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMIGVRDLSIIE 800

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T ++      I E IER    L+   + +++  +IE     +  +  E  
Sbjct: 801 TPPENRFPVQTYVMEYTPELIREAIER---ELARDGQVFFLYNRIE-----DIDAKAEEI 852

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           + L     + +   HGRM++ + ES M +F  G   +L+ TT+IE G+D+ + + +I+ +
Sbjct: 853 SQLVPE--ARVTYAHGRMTENELESTMLAFLEGQYDVLVTTTIIETGVDIPNVNTLIVYD 910

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+QLRGRVGR   ++     Y     L++++  RL  +K  TE   GF IA 
Sbjct: 911 ADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEDAEKRLQAIKEFTELGSGFKIAM 970

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G ILG +Q G
Sbjct: 971 RDLSIRGAGNILGAQQHG 988


>gi|325922308|ref|ZP_08184088.1| transcription-repair coupling factor Mfd [Xanthomonas gardneri ATCC
           19865]
 gi|325547213|gb|EGD18287.1| transcription-repair coupling factor Mfd [Xanthomonas gardneri ATCC
           19865]
          Length = 1156

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++
Sbjct: 606 GFPFEETPDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 665

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QHY   +    +  + VE+++        +  LE++A G   +IIGTH L Q
Sbjct: 666 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 725

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S 
Sbjct: 726 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 785

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R  ++T I   +   + E  +R    LS G + Y++   +E        S+V 
Sbjct: 786 IATPPPNRLAVQTFITAWDNALLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 834

Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               L E    + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ II
Sbjct: 835 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 894

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
           I  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF 
Sbjct: 895 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSITADAEKRLEAIASMDELGAGFT 954

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 955 LATHDLEIRGAGELLGEDQSG 975


>gi|296283911|ref|ZP_06861909.1| transcription-repair coupling factor [Citromicrobium bathyomarinum
           JL354]
          Length = 1163

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 147/435 (33%), Positives = 230/435 (52%), Gaps = 28/435 (6%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIA--QKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           +IA  LMR   ++ +     +E   A   + +   P+  T+ QE AI D+L D+     M
Sbjct: 569 EIASELMRTAAQRALKKAPVLEADHASYNQFVDRFPWEETEDQERAIADVLGDLESGKPM 628

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VAL A   A   G Q  ++AP  +LA+QH++   +      + V  
Sbjct: 629 DRLVCGDVGFGKTEVALRAAFVAAMGGQQVAVVAPTTLLARQHFQHFSERFAGFPLKVGR 688

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           ++  +      +  + +A G   I++GTHA+   S ++  L LVIVDE+ RFGV  + KL
Sbjct: 689 LSRLVSAKESSETRDALADGTMDIVVGTHAILSKSTKFKDLGLVIVDEEQRFGVTHKEKL 748

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            Q     H+L +TATPIPRTL +   G  ++S I   P  R  ++T +I     D+++ R
Sbjct: 749 KQLRADVHMLTLTATPIPRTLQMAMTGLRELSTIQTPPVDRLAVRTYVI---EWDDMVIR 805

Query: 475 LKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
            + +L E   G +++ + P+I +        +    + LHEH     +   HG+MS  + 
Sbjct: 806 -EALLREHHRGGQSFIVVPRISD--------MDPLLDWLHEHVPEVKVVPAHGQMSASEV 856

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E  M +F      +L++TT++E G+D+  A+ III  A+ FGLAQL+QLRGRVGR  ++ 
Sbjct: 857 EDRMSAFYEKKYDVLLSTTIVESGLDISSANTIIIHRADRFGLAQLYQLRGRVGRA-KLR 915

Query: 591 SCILLYHP---PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK- 643
           +   L  P    LS+ +  RL VL + +    GF +A  DL  R  G +LG +QSG  + 
Sbjct: 916 AYAYLTTPADEALSEVAEKRLKVLSDLDSLGAGFQLASHDLDIRGAGNLLGDEQSGHIRE 975

Query: 644 --FLIAQPELHDSLL 656
             F + Q  L D++L
Sbjct: 976 VGFELYQSMLEDAIL 990


>gi|190573435|ref|YP_001971280.1| putative transcription-repair coupling factor [Stenotrophomonas
            maltophilia K279a]
 gi|190011357|emb|CAQ44972.1| putative transcription-repair coupling factor [Stenotrophomonas
            maltophilia K279a]
          Length = 1154

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 246/476 (51%), Gaps = 28/476 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W+   R+       +A ++  +  R+Q +   G+ + V+  + +      PF  T  Q 
Sbjct: 557  QWSKAKRKAAEKVRDVAAELLEIQARRQARA--GLALQVDRAMYEPFAAGFPFEETPDQL 614

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI   L+D++    M R++ GDVG GKT VA+ A  AA  AG Q  ++ P  +LA+QHY
Sbjct: 615  AAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHY 674

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +    +  + VE+++        +  LE++A G   +I+GTH L Q  +++  L +V
Sbjct: 675  RNFRDRFADYPLKVEVLSRFKSTKEIKAELEKVAAGTIDVIVGTHRLLQPDVKFKDLGMV 734

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S I   P  R  +
Sbjct: 735  IVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPPNRLAV 794

Query: 459  KTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            +T    I + D  +  E  +  L+ G + Y++   +E        S+      L E    
Sbjct: 795  QTF---ITQWDNALLREAFQRELARGGQLYFLHNDVE--------SIGRMQRELSELVPE 843

Query: 517  S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ III  A+ FGLAQ
Sbjct: 844  ARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQ 903

Query: 576  LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
            LHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF +A  DL+ R  
Sbjct: 904  LHQLRGRVGRSHHRAYAYLITPDRRAITPDAEKRLEAIASMDELGAGFTLATHDLEIRGA 963

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS---VRGQSIRI 683
            GE+LG  QSG  +       L+  LLE A +  K    + PDL +   VRG  + +
Sbjct: 964  GELLGEDQSG--QMAEVGFSLYTELLERAVRSIKQ--GKLPDLDAGEEVRGAEVEL 1015


>gi|21243585|ref|NP_643167.1| transcription-repair coupling factor [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109155|gb|AAM37703.1| transcription-repair coupling factor [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 1154

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++
Sbjct: 604 GFPFEETGDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVL 663

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QHY   +    +  + VE+++        +  LE++A G   +IIGTH L Q
Sbjct: 664 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQ 723

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S 
Sbjct: 724 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 783

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R  ++T I   +   + E  +R    LS G + Y++   +E        S+V 
Sbjct: 784 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 832

Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               L E    + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ II
Sbjct: 833 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 892

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
           I  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF 
Sbjct: 893 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 952

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 953 LATHDLEIRGAGELLGEDQSG 973


>gi|239618514|ref|YP_002941836.1| transcription-repair coupling factor [Kosmotoga olearia TBF 19.5.1]
 gi|239507345|gb|ACR80832.1| transcription-repair coupling factor [Kosmotoga olearia TBF 19.5.1]
          Length = 1018

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/397 (32%), Positives = 216/397 (54%), Gaps = 20/397 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G+ +  +  +     R+ P   T+ Q  AI+++L D++ +  M R++ GD G GKT VAL
Sbjct: 456 GLSLKGDPTLEDAFKRSFPHLETEDQAKAIEEVLDDLADEKPMDRLVSGDAGYGKTEVAL 515

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV +G Q  I+ P  +LA+QHYE  K   +   + V+I+        R+K L  +
Sbjct: 516 RAAFRAVVSGKQVSILVPTTVLARQHYETFKNRLEPFGVNVDILDRYRTPKERQKILREL 575

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +G+  +IIGTH+L    +++  L LVI+DE+  FGV Q+  L +     +VL M+ATPI
Sbjct: 576 KNGKIDVIIGTHSLLSKDVRFADLGLVIIDEEQLFGVMQKEHLKKLRLEVNVLTMSATPI 635

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWIC 489
           PRTL +   G  ++S I   P GR   +T + P+N  D +I R  V+  ++ G +  ++ 
Sbjct: 636 PRTLYMALSGLRELSMIATPPIGRTMPETYVGPVN--DRLI-RTAVLREINRGGQVIYVH 692

Query: 490 PQIEE--KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            ++ E  K E+  R+++             I + HG+M     E  +  F +G  ++L+ 
Sbjct: 693 NRVNELNKLENKIRTLLPEV---------EIGVAHGQMPKRLFEKNVGDFYSGKLQMLLC 743

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP----PLSKN 603
           TT+IE G+D+ +A+ +I+++++ +GLAQL+QLRGRVGR    +    LY+P    P +K 
Sbjct: 744 TTIIESGVDIPNANTLIVDDSQRYGLAQLYQLRGRVGRSTRRAFAYFLYNPKRLTPKAKE 803

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
               L        G  +A +D++ R  GE+LG +Q G
Sbjct: 804 RLKALREFSGPGSGMKLAIKDMEIRGFGELLGKEQHG 840


>gi|253698851|ref|YP_003020040.1| transcription-repair coupling factor [Geobacter sp. M21]
 gi|251773701|gb|ACT16282.1| transcription-repair coupling factor [Geobacter sp. M21]
          Length = 1157

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 207/376 (55%), Gaps = 15/376 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q +AI  ++ DM     M R++ GDVG GKT VA+ A   +   G Q  I+ P 
Sbjct: 618 FEETPDQAAAIDQVIADMESPRPMDRLVCGDVGYGKTEVAMRAAFKSTLDGKQVAILVPT 677

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LAQQH E      ++  + VE+++       +++ LE +  G+  I+IGTH L Q  +
Sbjct: 678 TVLAQQHAESFASRLKDYPVRVEMLSRFRTPQQQKQILEGVKKGEVDIVIGTHRLLQKDV 737

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+IVDE+ RFGV  + +L Q      +L +TATPIPRTL ++ +G  D+S I  
Sbjct: 738 VFKDLGLLIVDEEQRFGVAHKERLKQFRAVVDILTLTATPIPRTLYMSLMGIRDLSIIDT 797

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R  IKT +      DE+I E +   L  G + +++  +++        ++ E    
Sbjct: 798 PPVDRLAIKTFV--SRSSDELIREAVLRELRRGGQVFFVHNRVQ-----TIGAMAEELKR 850

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           +     + IA+ HG+M++ + E VM SF +G   LL+ TT+IE G+D+  A+ +I+  A+
Sbjct: 851 IVPE--AKIAVGHGQMAEKELEQVMLSFMHGETNLLLCTTIIESGLDIPTANTLIVNRAD 908

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEED 624
            FGL+QL+QLRGRVGR +  +   LL      +S  +  RL +L+   +   GF IA  D
Sbjct: 909 TFGLSQLYQLRGRVGRSKSRAYAYLLIPGEGAISPEARERLKILQELTELGAGFRIATHD 968

Query: 625 LKQRKEGEILGIKQSG 640
           L+ R  G++LG +QSG
Sbjct: 969 LELRGAGDLLGARQSG 984


>gi|330994820|ref|ZP_08318742.1| Transcription-repair-coupling factor [Gluconacetobacter sp. SXCC-1]
 gi|329758081|gb|EGG74603.1| Transcription-repair-coupling factor [Gluconacetobacter sp. SXCC-1]
          Length = 1160

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 142/433 (32%), Positives = 225/433 (51%), Gaps = 33/433 (7%)

Query: 258  EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            E  +  +     PF  T+ Q  AI D+L DM+    M R++ GDVG GKT VAL A   A
Sbjct: 592  EDGMWDEFCARFPFVETEDQSRAIADVLDDMASGKPMDRLVCGDVGFGKTEVALRAAFVA 651

Query: 318  VEAGGQAVIMAPIGILAQQHYE-FIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAH 373
              +G Q  ++ P  +LA+QHY  F  ++     N   +  ++T     A R+     +A 
Sbjct: 652  AMSGAQVAVVVPTTLLARQHYRTFSARFAGLPVNVAQLSRMVTPKEATAVRKG----LAD 707

Query: 374  GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            G  +I+IGTHAL   ++++  L L+IVDE+  FGV  + KL       HVL ++ATP+PR
Sbjct: 708  GTVNIVIGTHALLAKTVKFADLGLLIVDEEQHFGVAHKEKLKALREDVHVLTLSATPLPR 767

Query: 434  TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQ 491
            TL L   G  ++S I   P  R  ++T I+P +   I E I+R +     G + + + P+
Sbjct: 768  TLQLALTGVREMSLIATPPTDRLAVRTFIMPFDSVVIREAIQRERF---RGGQVFCVVPR 824

Query: 492  IEEKKESNFRSVVERFNSLHEHFTSSIAII--HGRMSDIDKESVMDSFKNGTCKLLIATT 549
            IE+         ++R  +          ++  HGR++  + E VM  F +G   +L++T 
Sbjct: 825  IED---------LDRMATRLSEIVPDARLVQAHGRLTPTELERVMTEFSDGKYDILLSTN 875

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
            ++E G+D+   + +II  A+ FGL QL+QLRGRVGRG++     L +     LS  +  R
Sbjct: 876  IVESGLDMPAVNTLIIHRADMFGLGQLYQLRGRVGRGKQRGYAYLTWPQTHVLSAAAQKR 935

Query: 608  LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFL---IAQPELHDSLLEIARK 661
            L V++  +    GF +A  DL  R  G +LG +QSG  + +   + Q  L D++ ++  +
Sbjct: 936  LEVMQTLDTLGAGFTLASHDLDLRGAGNLLGDEQSGHIREVGIELYQQMLEDAVADLRTE 995

Query: 662  DAKHILTQDPDLT 674
              +  L QD D T
Sbjct: 996  KGRRRL-QDRDWT 1007


>gi|118444361|ref|YP_877116.1| transcription-repair coupling factor [Clostridium novyi NT]
 gi|118134817|gb|ABK61861.1| transcription-repair coupling factor [Clostridium novyi NT]
          Length = 1170

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 227/431 (52%), Gaps = 23/431 (5%)

Query: 219 EWTSPARE-RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EWT   ++ R A +E+    + L  +R   K   G     +    ++     P+  T  Q
Sbjct: 573 EWTKAKKKVRKAINEIAEELVKLYAIRSTLK---GHKFGKDTVWQKQFEDEFPYDETPDQ 629

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            +AI++I +DM     M R+L GDVG GKT VA+ A   +V  G Q  ++ P  ILA+QH
Sbjct: 630 LTAIQEIKEDMESSKAMDRLLCGDVGYGKTEVAIRAAFKSVMDGKQVALLVPTTILAEQH 689

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y  + K   +  + +++I+     A  +  L+ +  G   ++IGTH + Q  +++  L L
Sbjct: 690 YTNLVKRFCDFPVKIDMISRFKTSAQVKAILKEVKAGNVDVLIGTHRILQKDVEFKDLGL 749

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV  + K+        VL +TATPIPRTL ++  G  DIS I   P  R P
Sbjct: 750 LIVDEEQRFGVTHKEKIKNLKKNVDVLTLTATPIPRTLHMSLTGIRDISVIETPPEERYP 809

Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKE--SNFRSVVERFNSLHEHF 514
           ++T ++  N  D++I + +   +  G + Y++  ++   KE  +    +V          
Sbjct: 810 VQTYVVEFN--DQLILDAITREMDRGGQVYFVYNRVGSIKEMAAYLAKLVP--------- 858

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + + I HG+M + + E VM  F      +L+ TT+IE G+D+ +A+ +II +A+ FGL+
Sbjct: 859 DAKVGIAHGQMPERELEKVMFDFMKKEYDILVCTTIIETGLDIQNANTMIIYDADKFGLS 918

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+QLRGRVGR   ++   L Y     L++ +  RL  +K+ TE   GF IA  DL+ R 
Sbjct: 919 QLYQLRGRVGRTNRMAYAYLTYKKDKVLTEVAEKRLKAIKDFTELGSGFKIAMRDLEIRG 978

Query: 630 EGEILGIKQSG 640
            G ++G  Q G
Sbjct: 979 AGNLIGAAQHG 989


>gi|90416638|ref|ZP_01224568.1| transcription-repair coupling protein Mfd [marine gamma
           proteobacterium HTCC2207]
 gi|90331391|gb|EAS46627.1| transcription-repair coupling protein Mfd [marine gamma
           proteobacterium HTCC2207]
          Length = 1173

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 143/414 (34%), Positives = 214/414 (51%), Gaps = 21/414 (5%)

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A ++  +  R+  +K  G   N   +  +K     PF  T  Q  AI  + +D+     M
Sbjct: 589 AAELLDIYARRAARK--GFAFNDNEEDYRKFSGEFPFEETADQLEAIDAVRRDLLSPQPM 646

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VA+ A   AV +  Q VI+ P  +LA QH +  +    N  I VE 
Sbjct: 647 DRLVCGDVGFGKTEVAMRAAFTAVSSSKQVVILVPTTLLAHQHLQNFRDRFANWPIKVEE 706

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           ++       + + +     G+  I+I TH L    I + +L L+I+DE+HRFGV+Q+ K+
Sbjct: 707 LSRFRTSHEQDQVIADTESGKVDILISTHKLLHAKIDFERLGLLIIDEEHRFGVRQKDKI 766

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               ++  +L MTATPIPRTL L+     D+S I   PA R  +KT I    R D V   
Sbjct: 767 KSMRSSVDILTMTATPIPRTLNLSMHAVRDLSIIATPPARRLSVKTFI--RQREDRVTR- 823

Query: 475 LKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
            + +L E   G + Y++   ++     N +   +    L     + I + HG+M +   E
Sbjct: 824 -EAILREILRGGQVYFLHNDVK-----NIQRTADELALLVPE--ARINVAHGQMRERQLE 875

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            VM  F +    +L+ TT+IE GID+  A+ I+IE A+ FGLAQLHQLRGRVGR    + 
Sbjct: 876 QVMSDFYHQRFNVLVCTTIIETGIDIPSANTILIERADKFGLAQLHQLRGRVGRSHHQAY 935

Query: 592 CILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
             LL  PP  ++ ++  RL  +   +    GF +A  DL+ R  GE+LG +QSG
Sbjct: 936 AYLLTPPPKTMTSDALKRLEAISAADHLGSGFTLATNDLEIRGAGELLGEEQSG 989


>gi|256545180|ref|ZP_05472546.1| transcription-repair coupling factor - superfamily II helicase
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399221|gb|EEU12832.1| transcription-repair coupling factor - superfamily II helicase
           [Anaerococcus vaginalis ATCC 51170]
          Length = 1164

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 210/377 (55%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T SQ  +I +I  DM     M R+L GDVG GKT VAL A   A+  G Q   + P 
Sbjct: 619 YEETDSQVRSINEIKDDMENIKPMDRLLCGDVGYGKTEVALRAAFKAIMDGYQVCFLVPT 678

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QHY  +K+  ++  +   +++  + +  + K ++ +  G+  II+GTH L  + I
Sbjct: 679 TILASQHYSTMKERFKDYPVECALLSRFVSKKEQDKNIKNLKSGKIDIIVGTHRLLSNDI 738

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+I+DE+ RFGV+ + KL +      VL ++ATPIPRTL L+  G  D+S + E
Sbjct: 739 KFKNLGLLIIDEEQRFGVRHKDKLKKLKENIDVLTLSATPIPRTLQLSLTGIRDMSTLDE 798

Query: 451 KPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R P+ T ++  +    +I+R ++  L    + Y++  ++         ++ + +N 
Sbjct: 799 PPERRLPVNTYVLEYDS--SIIKRAIEKELDRDGQVYFVYNRV--------YNIEKIYNE 848

Query: 510 LHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L E    ++IAI HG+MS  + E +M+ F NG   +L+ATT+IE G+D+ + + II+ ++
Sbjct: 849 LVELIPDANIAIAHGQMSAKNLEKIMEDFVNGDIDILLATTIIETGMDIQNVNTIIVYDS 908

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEE 623
           +  GL+QL+QL+GR+GR    S     Y     L++    RL  +K+  D   G+ IA  
Sbjct: 909 DMMGLSQLYQLKGRIGRSSRSSYAYFTYAKGKVLTEIGEKRLKSIKDFSDFGSGYKIAMR 968

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G ILG  QSG
Sbjct: 969 DLELRGAGNILGESQSG 985


>gi|134095113|ref|YP_001100188.1| transcription-repair ATP-dependent coupling factor [Herminiimonas
            arsenicoxydans]
 gi|133739016|emb|CAL62064.1| Transcription-repair-coupling factor (TRCF) (ATP-dependent helicase
            Mfd) [Herminiimonas arsenicoxydans]
          Length = 1148

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 151/424 (35%), Positives = 222/424 (52%), Gaps = 21/424 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q +AI  ++QDM+    M R++ GDVG GKT VAL A   AV  G Q  I+AP 
Sbjct: 604  FEETVDQAAAINAVIQDMTSGKPMDRLICGDVGFGKTEVALRAAFIAVLGGKQVAILAPT 663

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QH +       +  + +  ++         +A++ +A G   I+IGTH L     
Sbjct: 664  TLLAEQHAQTFADRFADWPVRIAELSRFRSGKEITQAMKGMADGTIDIVIGTHKLLSADT 723

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I  
Sbjct: 724  KFSRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMALEGLRDFSIIAT 783

Query: 451  KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             P  R  IKT +   N   I E   R    L  G + Y++  ++E  +  N ++++E   
Sbjct: 784  APQKRLAIKTFVRSENASVIREACLR---ELKRGGQVYFLHNEVETIE--NRKAMLEELM 838

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + I + HG++ + D E +M  F      +L+ TT+IE GIDV  A+ II+  A
Sbjct: 839  P-----EARIGVAHGQLHERDLERIMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRA 893

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
            + FGLAQLHQLRGRVGR    +   LL H    LSK +  RL  ++  E+   GF +A  
Sbjct: 894  DKFGLAQLHQLRGRVGRSHHQAYAYLLVHDVQGLSKLAQRRLDAIQQMEELGSGFYLAMH 953

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            DL+ R  GE+LG  QSG    +  Q  L+  +L  A +  K+   ++PDL +    +  I
Sbjct: 954  DLEIRGAGEVLGDNQSGEMTEIGFQ--LYSDMLNEAVRSLKN--GKEPDLAAPLATTTEI 1009

Query: 684  LLYL 687
             L++
Sbjct: 1010 NLHV 1013


>gi|87311618|ref|ZP_01093735.1| transcription-repair coupling factor [Blastopirellula marina DSM
           3645]
 gi|87285621|gb|EAQ77538.1| transcription-repair coupling factor [Blastopirellula marina DSM
           3645]
          Length = 1077

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 156/499 (31%), Positives = 255/499 (51%), Gaps = 38/499 (7%)

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E ++K +   KS P +A+   +    +K         A E+  +D  LAG+  LL ++  
Sbjct: 470 ELVQKYVGGSKSRPPLAKIGGVTWQKQKK--------AVEQAVHD--LAGE--LLEVQAM 517

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            +   GI  + +    ++   + P+  T  Q +AI +I  DM Q   M R+L GDVG GK
Sbjct: 518 RRSRPGIAFSADTLWQREFDLSFPYEETTDQLTAIGNIKFDMEQPRPMDRLLCGDVGFGK 577

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T VA+     AV+ G Q  I+ P  ILA+QHY+ +++        +  ++       +R 
Sbjct: 578 TEVAMRGAFKAVDNGYQVAILVPTTILAEQHYKSLRERMAEFPFTIARLSRFASAKEQRD 637

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            ++ +  G   I++GTH L    + +  L LV++DE+ RFGV+ + +L Q  T   VL M
Sbjct: 638 VVKGLKDGTIDIVVGTHRLASKDVSFQNLGLVVIDEEQRFGVEIKERLKQLRTTVDVLTM 697

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKK 484
           TATPIPRTL ++ +G  DIS +   P  R  ++T    ++R  + + R  V+  LS G +
Sbjct: 698 TATPIPRTLHMSLVGVRDISNLETPPLDRVAVET---KVSRWGDELIRHAVLRELSRGGQ 754

Query: 485 AYWICPQIEEKK--ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            +++  ++++ +   +  + +V           + I I HG+M +   E VM  F  G  
Sbjct: 755 IFFVHNRVQDIELIAAKLQRIVPE---------AKIGIGHGQMGEGALEKVMTDFIAGKF 805

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---- 598
            LL+ATT++E G+D+ +A+ I I+ A  +GL++LHQLRGRVGR +  + C +L  P    
Sbjct: 806 DLLLATTIVESGLDIPNANTIFIDEANRYGLSELHQLRGRVGRYKHRAYCYMLLQPGRHL 865

Query: 599 -PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            P++      +    +   GF I+  DL+ R  G ILG +QSG         EL+  LLE
Sbjct: 866 SPVAAKRLHAIEEFSHMGAGFAISMRDLEIRGAGNILGTQQSG--HIATVGYELYCQLLE 923

Query: 658 IARKDAKHI---LTQDPDL 673
            A +  K +   +T D D+
Sbjct: 924 TAVRRMKRMPSKMTIDVDV 942


>gi|163786687|ref|ZP_02181135.1| transcription-repair coupling factor [Flavobacteriales bacterium
           ALC-1]
 gi|159878547|gb|EDP72603.1| transcription-repair coupling factor [Flavobacteriales bacterium
           ALC-1]
          Length = 1096

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 209/376 (55%), Gaps = 13/376 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q ++  DI  DM  +  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P 
Sbjct: 539 YEDTPDQITSTADIKADMESERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPT 598

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH    K+  ++  + V+ +        +R+ LE +  G+  IIIGTH L   ++
Sbjct: 599 TILAYQHSRTFKERLKDFPVTVDYVNRFRTAKEKRETLEGLEKGRVDIIIGTHQLANKNV 658

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+IVDE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S IT 
Sbjct: 659 KFKDLGLLIVDEEQKFGVAVKEKLKTIKENVDVLTLTATPIPRTLQFSLMAARDLSVITT 718

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R PI++ +I     + + + +   +  G + ++I  +IE  KE     +++R    
Sbjct: 719 APPNRYPIESHVIRFAE-ETIRDAVSYEIQRGGQVFFIHNRIENIKE--VAGMIQRLVP- 774

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + I I HG++     E +M SF NG   +L++TT++E G+DV +A+ I I NA +
Sbjct: 775 ----DAKIGIGHGQLDGKKLEHLMLSFMNGEFDVLVSTTIVESGLDVPNANTIFINNANN 830

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDL 625
           FGL+ LHQ+RGRVGR  + + C  +   +  ++ ++  R++ L+  TE   GF IA +DL
Sbjct: 831 FGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTTDARKRITALEQFTELGSGFNIAMKDL 890

Query: 626 KQRKEGEILGIKQSGM 641
           + R  G++LG +QSG 
Sbjct: 891 EIRGAGDLLGGEQSGF 906


>gi|329954432|ref|ZP_08295523.1| transcription-repair coupling factor [Bacteroides clarus YIT 12056]
 gi|328527400|gb|EGF54397.1| transcription-repair coupling factor [Bacteroides clarus YIT 12056]
          Length = 1157

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/408 (32%), Positives = 217/408 (53%), Gaps = 15/408 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 560 LIKLYSQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSKATADVKADMESARPMDRLVC 619

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  K+  +     VE ++   
Sbjct: 620 GDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKERLKGLPCRVEYLSRAR 679

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  ++ +A G+ +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 680 TAAQAKAVVKGLADGEVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQLKV 739

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L MTATPIPRTL  + +G  D+S I   P  R PI+T +   +  D + + +   +
Sbjct: 740 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFSD-DIITDAINFEM 798

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S   + +++  +I    E   ++++ER           + I HG+M   + E ++  F N
Sbjct: 799 SRNGQVFFVNNRISNLSE--LKAMIERNIP-----DCRVCIGHGQMEPAELEKIILDFVN 851

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  PP
Sbjct: 852 YDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-APP 910

Query: 600 LSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           LS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 911 LSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 958


>gi|300774874|ref|ZP_07084737.1| transcription-repair coupling factor [Chryseobacterium gleum ATCC
           35910]
 gi|300506689|gb|EFK37824.1| transcription-repair coupling factor [Chryseobacterium gleum ATCC
           35910]
          Length = 1122

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/413 (32%), Positives = 216/413 (52%), Gaps = 17/413 (4%)

Query: 237 QIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           QIA  L++   Q K   G     +  +  ++  +  +  T  QE A  D+ +DM     M
Sbjct: 521 QIAFDLIKLYAQRKTAKGFAYTPDSYLQNELEASFIYEDTPDQEKATIDVKRDMEADTVM 580

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VA+ A   A   G Q  ++ P  ILA QHY   K+  ++  + V  
Sbjct: 581 DRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNVAY 640

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +        + + LE + +G+  IIIGTH L   S+++  L L+I+DE+H+FGV  + KL
Sbjct: 641 VNRFRTAKQKSETLEALKNGKVDIIIGTHQLVSSSVKFKDLGLLIIDEEHKFGVSVKDKL 700

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                    L +TATPIPRTL  + +   D+S I   P  R+P++T +I  N  + + + 
Sbjct: 701 KTLKNNVDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETQLIGFNE-ETLRDA 759

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           +   L    + Y+I  +IE  K  +   +++R         + +   HG+M     E  +
Sbjct: 760 VSYELQRDGQVYFINNRIENLK--DIAGLIQRLVP-----DARVITGHGQMEGKQLEKNV 812

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G   +L++TT++E G+DV +A+ I I +A+ FG+A LHQ+RGRVGR    + C L
Sbjct: 813 LDFMEGKYDVLVSTTIVESGVDVPNANTIFINDAQRFGMADLHQMRGRVGRSNRKAFCYL 872

Query: 595 LYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           +  PP   ++ ++  RL  ++   D   GF IA +DL+ R  G++LG +QSG 
Sbjct: 873 I-TPPYDMMTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLLGAEQSGF 924


>gi|293603936|ref|ZP_06686351.1| transcription-repair coupling factor [Achromobacter piechaudii ATCC
           43553]
 gi|292817773|gb|EFF76839.1| transcription-repair coupling factor [Achromobacter piechaudii ATCC
           43553]
          Length = 1160

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 144/408 (35%), Positives = 208/408 (50%), Gaps = 17/408 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q     G   N+     Q       F  T  Q +AI+ ++ DM+    M R++ 
Sbjct: 586 LLALYAQRAAREGFAFNLPLNDYQAFAEGFGFEETVDQAAAIEAVIADMTSGRPMDRLVC 645

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH +       +  + V  ++   
Sbjct: 646 GDVGFGKTEVALRAAFLAVANGKQVALLCPTTLLAEQHAQTFSDRFADWPVRVVELSRFR 705

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                  A+E I  G+  I+IGTH +    +++ +L LVI+DE+HRFGV+Q+  L     
Sbjct: 706 SAKEVAAAVEGINDGRVDIVIGTHKILSKDVKFKRLGLVIIDEEHRFGVRQKEALKALRA 765

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV- 478
              VL +TATPIPRTL ++  G  D S I   P  R  IKT    + R D    R  ++ 
Sbjct: 766 EVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTF---VRREDGSTLREALLR 822

Query: 479 -LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            L  G + Y++  ++E     N R+ +E          + IA+ HG+M + + E VM  F
Sbjct: 823 ELKRGGQCYFLHNEVETIH--NRRARLEELVP-----EARIAVAHGQMPERELEQVMKGF 875

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY- 596
                 +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR    +   LL  
Sbjct: 876 YQQRYNVLLCTTIIETGIDVPSANTIVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTP 935

Query: 597 -HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
               ++ N+  RL  ++  E+   GF +A  DL+ R  GE+LG  QSG
Sbjct: 936 GEDAITNNAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEVLGDSQSG 983


>gi|260219542|emb|CBA26387.1| Transcription-repair-coupling factor [Curvibacter putative symbiont
            of Hydra magnipapillata]
          Length = 1159

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 147/413 (35%), Positives = 218/413 (52%), Gaps = 23/413 (5%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q++AI  ++QDM     M R++ GDVG GKT VAL A   AV  G Q   +AP 
Sbjct: 607  FEETADQKAAIHCVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFIAVTGGKQVAFLAPT 666

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QH++ +        + +  ++          AL+ +A G   I++GTH L  +S 
Sbjct: 667  TLLAEQHFQTLVDRFSKWPVKIAEMSRFRSAKEITAALKGVADGTVDIVVGTHKLLSEST 726

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            Q+  L L+I+DE+HRFGV+ + ++        VL +TATPIPRTL +   G  D+S I  
Sbjct: 727  QFKNLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSVIAT 786

Query: 451  KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             P  R  IKT +       I E + R    L  G + Y++  ++E        ++  R  
Sbjct: 787  APQRRLAIKTFVRTEGNGVIREAVLR---ELKRGGQVYFLHNEVE--------TIENRRQ 835

Query: 509  SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L E    + IA+ HG+M +   E+VM  F      LL+ +T+IE GIDV  A+ I++  
Sbjct: 836  KLEELLPEARIAVAHGQMPERQLEAVMRDFVAQRYNLLLCSTIIETGIDVPSANTIVMSR 895

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622
            A+ FGLAQLHQLRGRVGR    +   L+      L+K++  RL  ++  E+   GF +A 
Sbjct: 896  ADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKHAQQRLDAIQQMEELGSGFYLAM 955

Query: 623  EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             DL+ R  GE+LG  QSG    L    +L++ +L  A +  K+   Q+PDL S
Sbjct: 956  HDLEIRGAGEVLGENQSG--NMLEVGFQLYNEMLSEAVRCLKN--GQEPDLLS 1004


>gi|240169894|ref|ZP_04748553.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
            kansasii ATCC 12478]
          Length = 1238

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 208/377 (55%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 657  FTETVDQLTAIQEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 716

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH +   +      + V+ ++     A  R  ++ +A G   I+IGTH L Q  +
Sbjct: 717  TLLADQHLQTFAQRMSGFPVTVKGLSRFTDAAESRTVIDGLADGSVDIVIGTHRLLQTGV 776

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LV+VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 777  RWKDLGLVVVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 836

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T + P +   +V   L+  L    +A+++  ++   ++  ++ R +V    
Sbjct: 837  PPEERYPVLTYVGPHDD-KQVAAALRRELLRDGQAFYVHNRVSSIDRAAAHVRELVPE-- 893

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + + + HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A
Sbjct: 894  -------ARVVVAHGQMPEELLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERA 946

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
            + FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +
Sbjct: 947  DTFGLSQLHQLRGRVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALK 1006

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG++QSG
Sbjct: 1007 DLEIRGAGNVLGVEQSG 1023


>gi|327399449|ref|YP_004340318.1| transcription-repair coupling factor [Hippea maritima DSM 10411]
 gi|327182078|gb|AEA34259.1| transcription-repair coupling factor [Hippea maritima DSM 10411]
          Length = 1032

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 146/406 (35%), Positives = 227/406 (55%), Gaps = 21/406 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  AI D+  DMS+   M R++ GDV  GKT VA  A+A AV    QAV M P 
Sbjct: 502 YDETPDQLKAISDVKDDMSKDVPMDRLICGDVSFGKTEVAARAIAIAVFNLKQAVFMVPT 561

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH++ +K   ++  + ++++T    ++ R + L+ +  G+  I+I THA++   +
Sbjct: 562 TVLALQHFKNLKDRFKSFPVEIQLLTRFSTKSERERILKGLKQGRIDILITTHAVYSKDV 621

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV++DE+HRFGV+ +  L  K     +L ++ATPIPRTL ++  G +DIS I  
Sbjct: 622 EFADLGLVVIDEEHRFGVKVKEHLKSKYPHADMLYLSATPIPRTLNMSLNGILDISVIKT 681

Query: 451 KPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIE--EKKESNFRSVVER 506
            P  RKPI+T+I    R   +I    L+ +  EG + Y++   IE  +K +S   +++  
Sbjct: 682 PPLERKPIETII--AKRKSSIIRDAILRELSREG-RVYFVHNSIETMDKVKSELDNLLP- 737

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                    +   I+H +M     +SV + F NG   +LI+T++IE G+D+     III+
Sbjct: 738 --------FAKKGIVHAKMPKNQIKSVFERFNNGEFDILISTSIIESGLDIKSVDTIIID 789

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK---NTEDGFLIAEE 623
           +A+ FGL+ LHQLRGRVGRG+ ++   LLY   LS+N+  RL  +        G  +A +
Sbjct: 790 DADRFGLSDLHQLRGRVGRGDRVAYAYLLYRGKLSENATKRLEYMSEFIERGSGLNLALK 849

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           D++ R  G ILG  QSG  K +     L  SL+E A K+ K   TQ
Sbjct: 850 DMEIRGYGNILGKDQSGKIKSVGFSTYL--SLIEEAIKELKSQPTQ 893


>gi|170744353|ref|YP_001773008.1| transcription-repair coupling factor [Methylobacterium sp. 4-46]
 gi|168198627|gb|ACA20574.1| transcription-repair coupling factor [Methylobacterium sp. 4-46]
          Length = 1203

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 143/413 (34%), Positives = 219/413 (53%), Gaps = 23/413 (5%)

Query: 254  PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            P    G+ A +     P+  T+ QE+AI   L D++    M R++ GDVG GKT VAL A
Sbjct: 639  PDGTYGEFAARF----PYEETEDQEAAIAATLGDLTAGRPMDRLICGDVGFGKTEVALRA 694

Query: 314  MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
               A  +G Q  ++ P  +LA+QHY    +  +   + V   +  +  A  ++  E +A 
Sbjct: 695  AFVAAISGRQVAVVVPTTLLARQHYRTFAERFKGLPVNVAQASRFVSSAELKRVREGLAD 754

Query: 374  GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            G   I++GTHAL   +I +  L L+I+DE+  FGV  + +L       HVL ++ATPIPR
Sbjct: 755  GTVDIVVGTHALLAKTIGFRDLGLIIIDEEQHFGVAHKERLKALRAEVHVLTLSATPIPR 814

Query: 434  TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            TL L   G  ++S I   P  R  ++T + P + +  V E L      G +A+++ P+IE
Sbjct: 815  TLQLAMTGVRELSIIATPPVDRLAVRTFVTPFDPL-LVREALLRERYRGGQAFYVVPRIE 873

Query: 494  EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               E      V+RF    E   + + I HG+M     E VM +F  G   +L++TT++E 
Sbjct: 874  HLDE------VKRFLD-REMPEAKVGIAHGQMPAGQLEDVMTAFYEGKFDILLSTTIVES 926

Query: 554  GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLS 609
            G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR +  +    L+  P    L+  +  RL 
Sbjct: 927  GLDIPTANTLIVHRADMFGLAQLYQLRGRVGRSK--ARAYALFTTPEGKALTVQAERRLK 984

Query: 610  VLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            VL++ +    GF +A  DL  R  G +LG +QSG  K +    EL+  +LE A
Sbjct: 985  VLQSLDTLGAGFQLASHDLDIRGAGNLLGDEQSGHIKEV--GYELYQQMLEDA 1035


>gi|332524809|ref|ZP_08401002.1| transcription-repair coupling factor [Rubrivivax benzoatilyticus JA2]
 gi|332108111|gb|EGJ09335.1| transcription-repair coupling factor [Rubrivivax benzoatilyticus JA2]
          Length = 1145

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 148/424 (34%), Positives = 219/424 (51%), Gaps = 23/424 (5%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q +AI  ++QD+     M R++ GDVG GKT VAL A   +V  G Q  ++AP 
Sbjct: 597  FEETPDQRAAIHAVIQDLVSPRPMDRLVCGDVGFGKTEVALRAAFVSVIGGKQVALLAPT 656

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QHY+ +        + +  ++        + ALE +A G   I++GTH L    +
Sbjct: 657  TLLAEQHYQTLVDRFGKWPVKIAELSRFRSAKEVKAALEGLADGTVDIVVGTHKLLSQDV 716

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +Y +L L+I+DE+HRFGV+ +  +        VL +TATPIPRTL +   G  D+S I  
Sbjct: 717  RYKRLGLLIIDEEHRFGVRHKEAIKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSVIAT 776

Query: 451  KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             P  R  IKT +   N   I E + R    L  G + Y++   +E        S+  R  
Sbjct: 777  APQRRLAIKTFVRSENNSTIREAVLR---ELKRGGQVYFLHNDVE--------SIQARRQ 825

Query: 509  SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L E    + I + HG+M + + E VM  F      +L+ +T+IE GIDV  A+ I+I  
Sbjct: 826  KLEELLPEARIGVAHGQMPERELEHVMRDFVAQRHNILLCSTIIETGIDVPTANTIVISR 885

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622
            A+ FGLAQLHQLRGRVGR    +   LL      L+K +  RL  ++  E+   GF +A 
Sbjct: 886  ADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDVEALTKQAAQRLEAIQQMEELGSGFYLAM 945

Query: 623  EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
             DL+ R  GE+LG  QSG    +    +L++ +L  A +  K    ++PDL S    +  
Sbjct: 946  HDLEIRGAGEVLGENQSG--NMMEVGFQLYNDMLSEAVRSLK--AGKEPDLLSPLSATTE 1001

Query: 683  ILLY 686
            I L+
Sbjct: 1002 INLH 1005


>gi|154483284|ref|ZP_02025732.1| hypothetical protein EUBVEN_00985 [Eubacterium ventriosum ATCC
           27560]
 gi|149735794|gb|EDM51680.1| hypothetical protein EUBVEN_00985 [Eubacterium ventriosum ATCC
           27560]
          Length = 1168

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 214/374 (57%), Gaps = 17/374 (4%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q +AI ++ +DM     M R++ GDVG GKT VA+ A   AV+   Q   + P  +L
Sbjct: 625 TDDQLNAISEVKKDMESTKIMDRLICGDVGFGKTEVAIRAAFKAVQDDKQVAYLVPTTVL 684

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY+  K+  ++  + VE+++    +++  K ++ +  G   ++IGTH +    +++ 
Sbjct: 685 AQQHYKTFKQRFKDFPVRVEMLSRFRTKSNIDKTIKDLNKGYVDVVIGTHRMLSKDVKFK 744

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ + ++ +      V+ +TATPIPRTL ++ +G  D+  + E P 
Sbjct: 745 DLGLLIIDEEQRFGVKHKEQIKELKNNVDVMTLTATPIPRTLHMSLIGIRDMCVMEEPPQ 804

Query: 454 GRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            R PI+T ++  N   E I R  +   L+ G + Y++  ++++  E     +  +  +L 
Sbjct: 805 ERMPIQTFVMEYN---EEIARDAINRELARGGQVYYVYNRVQDIAE-----MAGKVQALV 856

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               +S+A  HG+MS+   E +M  F NG   +L+ TT+IE G+D+ +A+ III +AE  
Sbjct: 857 PD--ASVAFAHGQMSERQLEEIMYDFVNGDIDVLVTTTIIETGLDIPNANTIIIHDAEKM 914

Query: 572 GLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLK 626
           GL+QL+QLRGRVGR    S   L+Y  +  L++ +  RL  +++ TE   G  IA  DL+
Sbjct: 915 GLSQLYQLRGRVGRSNRTSYAFLMYSRNKMLTEVAEKRLGAIRDFTELGSGVKIAMRDLE 974

Query: 627 QRKEGEILGIKQSG 640
            R  G +LG  QSG
Sbjct: 975 IRGTGNLLGAAQSG 988


>gi|113867469|ref|YP_725958.1| transcription-repair coupling factor [Ralstonia eutropha H16]
 gi|113526245|emb|CAJ92590.1| Transcription-repair coupling factor [Ralstonia eutropha H16]
          Length = 1149

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 146/431 (33%), Positives = 223/431 (51%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R+        A ++  L  R+  ++    P++   K  +    +  F  T  Q 
Sbjct: 556 QWDKAKRKAAQQIRDTAAELLNLYARRAAREGFAFPLSP--KDYETFAESFGFEETPDQA 613

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QH+
Sbjct: 614 AAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVAMLAPTTLLAEQHF 673

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +        + +  ++    +     A+ +I  G   I+IGTH +  D +++ +L LV
Sbjct: 674 QTLSDRFAEWPVRIVELSRFKTKKEIDAAIRQINEGTVDIVIGTHKILSDQVRFERLGLV 733

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 734 IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 793

Query: 459 KTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
           KT    + R ++ + R  ++  L  G + Y++  ++E  E K +    +V          
Sbjct: 794 KTF---VRREEDGVIREAILRELKRGGQVYFLHNEVETIENKRARLAELVPE-------- 842

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + IA+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  ++ FGLA
Sbjct: 843 -ARIAVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPTANTILIHRSDKFGLA 901

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QLHQLRGRVGR    +   LL H    L+K +  RL  ++  E+   GF +A  DL+ R 
Sbjct: 902 QLHQLRGRVGRSHHQAYAYLLVHDVEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRG 961

Query: 630 EGEILGIKQSG 640
            GE+LG KQSG
Sbjct: 962 AGEVLGDKQSG 972


>gi|84516196|ref|ZP_01003556.1| transcription-repair coupling factor [Loktanella vestfoldensis
           SKA53]
 gi|84509892|gb|EAQ06349.1| transcription-repair coupling factor [Loktanella vestfoldensis
           SKA53]
          Length = 1148

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 143/395 (36%), Positives = 214/395 (54%), Gaps = 27/395 (6%)

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           E  +  + L   P++ T  Q SAI D+L D+     M R++ GDVG GKT VA+ A   A
Sbjct: 581 ESGLWDQFLARFPYAETDDQLSAIDDVLSDLGSGQPMDRLICGDVGFGKTEVAIRAAFVA 640

Query: 318 VEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALER--I 371
             AG Q  I+AP  +LA+QHY    E  + +  N + +   ++       R  AL R  I
Sbjct: 641 AMAGVQVAIVAPTTLLARQHYQSFAERFRGFPVNVRPLSRFVS------PRDAALTRDGI 694

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A G   I+IGTHAL   ++ +  L L+I+DE+ +FGVQ + +L Q  T  HVL +TATPI
Sbjct: 695 AKGTVDIVIGTHALLAKAVNFKNLGLLIIDEEQKFGVQHKERLKQLRTDVHVLTLTATPI 754

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL L+  G  D+S I   P  R  I+T +   + I  V E L      G +++ + P+
Sbjct: 755 PRTLQLSLSGVRDLSVIGTPPIDRLAIRTYVSEFDTI-TVREALLREHYRGGQSFIVVPR 813

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAI-IHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           I +  E      +E F  L E       I   G+M+  + +  M++F +G   +L+ATT+
Sbjct: 814 ITDMDE------MEAF--LREEVPEVTFISATGQMAAGELDDRMNAFYDGKYDVLLATTI 865

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRL 608
           +E G+D+  A+ +I+  A+ FGL+QL+Q+RGRVGR +  +   L   P   L+  +  RL
Sbjct: 866 VESGLDIPTANTMIVWRADMFGLSQLYQIRGRVGRSKTRAYAYLTTKPRQKLTTTAQKRL 925

Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            VL + +    GF +A +DL  R  G +LG +QSG
Sbjct: 926 RVLGSIDSLGAGFTLASQDLDIRGAGNLLGEEQSG 960


>gi|33863047|ref|NP_894607.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9313]
 gi|33634964|emb|CAE20950.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9313]
          Length = 1193

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/400 (32%), Positives = 215/400 (53%), Gaps = 18/400 (4%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+ PT  Q  A+ D+ +DM     M R++ GDVG GKT VA+ A+  A+ +G Q  ++
Sbjct: 618  SFPYEPTPDQVKAVVDVKRDMEAAQPMDRLVCGDVGFGKTEVAIRAIFKAITSGRQIAML 677

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            AP  +LAQQH+  +        I V ++      + R+  L  +  G    ++GTH L  
Sbjct: 678  APTTVLAQQHWRTLSDRFAPYPIKVALLNRFRTSSERKSILNGLKEGTIDAVVGTHQLLS 737

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  + KL L++VDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  ++S 
Sbjct: 738  KNTTFQKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSLSGVREMSL 797

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
            IT  P  R+PIKT +   +  + V   ++  L  G + +++ P++E         V  + 
Sbjct: 798  ITTPPPLRRPIKTHLAAFDE-EAVRSSIRQELDRGGQVFYVVPRVE-----GIEDVARQL 851

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              +       + + HG+M++ + ES M +F  G   L++ TT++E G+D+   + I+IE+
Sbjct: 852  QQMLPDL--KLLVAHGQMAEGELESSMVAFNAGEADLMLCTTIVESGLDIPRVNTILIED 909

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLK---NTEDGFLIA 621
            A  FGLAQL+QLRGRVGR   + +   L++P    LS  +  RL  ++       G+ +A
Sbjct: 910  AHKFGLAQLYQLRGRVGR-SGVQAHAWLFYPGDASLSDTARQRLRAIQEFAQLGSGYQLA 968

Query: 622  EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEI 658
              D++ R  G +LG++QSG  +   F +    L +SL EI
Sbjct: 969  MRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEI 1008


>gi|313608166|gb|EFR84210.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL F2-208]
          Length = 277

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/266 (41%), Positives = 174/266 (65%), Gaps = 5/266 (1%)

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G
Sbjct: 2   VLFMTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKG 61

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNG 540
            + Y ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F + 
Sbjct: 62  HQVYIICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDK 121

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  
Sbjct: 122 KIDCLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK- 180

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIA 659
           ++    R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  LLEIA
Sbjct: 181 TEVGKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRLLEIA 239

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685
           R+DA H++ ++  L +   + +  LL
Sbjct: 240 RQDAVHMIFEEDMLENKNYEKLVALL 265


>gi|317120949|ref|YP_004100952.1| transcription-repair coupling factor [Thermaerobacter marianensis DSM
            12885]
 gi|315590929|gb|ADU50225.1| transcription-repair coupling factor [Thermaerobacter marianensis DSM
            12885]
          Length = 1219

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 148/460 (32%), Positives = 237/460 (51%), Gaps = 25/460 (5%)

Query: 210  HNPRKAK--DFEWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
            H PR AK    EW     R + +  EL    +AL   R+  +   G     +    ++  
Sbjct: 576  HQPRLAKLGSGEWNKVKQRVKESVRELAGELLALYAARQTLR---GHAFGPDTPWQRQFE 632

Query: 267  RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
               P+  T  Q  AI  I  DM +   M R+L GDVG GKT VA+ A   AV+ G Q  +
Sbjct: 633  DAFPYQETPDQLEAIAAIKADMERPVPMDRLLVGDVGFGKTEVAMRAAFKAVQDGKQVAV 692

Query: 327  MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            + P  +LA QH    K+      + +  ++     A + + L  +A G   I+IGTH L 
Sbjct: 693  LVPTTVLAYQHERTFKERFAPFPVTIRTLSRFASPAEQAEILTGLAQGTIDIVIGTHRLV 752

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            Q  +++  L L+I+DE+HRFGV  + +L Q      VL ++ATPIPRTL +   G  D+S
Sbjct: 753  QPDVRFKDLGLLIIDEEHRFGVAHKERLKQLKQNVDVLTLSATPIPRTLHMALAGIRDLS 812

Query: 447  KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            +I   P  R P++T ++  +   + + I+R    L  G + +++  +++     + ++V 
Sbjct: 813  RIDTPPENRFPVQTFVVEWHESLVRDAIQR---ELRRGGQVFYVHNRVQ-----SIQAVR 864

Query: 505  ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             R   L     +  A+ HG+M + + E VM  F  G   +L+ TT+IE G+D+ + + +I
Sbjct: 865  RRLERLVPE--ARFAVAHGQMGEGELERVMVDFMAGKADVLVCTTIIESGLDMPNVNTLI 922

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619
            +E+A+ FGLAQL+QLRGRVGR + ++     Y     L++++  RL  +K+  +   GF 
Sbjct: 923  VEDADRFGLAQLYQLRGRVGRSDRVAYAYFTYRRDKVLTEDAQKRLQAIKDFTELGAGFK 982

Query: 620  IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +A  DL+ R  G +LG +Q G    L    +L+  LLE A
Sbjct: 983  LALRDLEIRGAGNLLGAEQHGF--MLSVGFDLYAQLLEEA 1020


>gi|296535472|ref|ZP_06897661.1| transcription-repair coupling factor [Roseomonas cervicalis ATCC
            49957]
 gi|296264193|gb|EFH10629.1| transcription-repair coupling factor [Roseomonas cervicalis ATCC
            49957]
          Length = 1174

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 239/459 (52%), Gaps = 31/459 (6%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
            RKAK       A++R+A    +AGQ+  +   ++ K +  +    EG   +   R  PF+
Sbjct: 575  RKAK-------AKQRIAD---MAGQLIRIAAERRVK-DAPLVTPPEGAWDEFCAR-FPFA 622

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T+ Q+ AI D+L+D++    M R++ GDVG GKT +AL A      +G Q  ++ P  +
Sbjct: 623  ETEDQQRAIADVLEDLAAGRPMDRLICGDVGFGKTEIALRAAFVVAMSGAQVAVVVPTTL 682

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            L++QH+       +   I V  ++  +      +    +A G  +I++GTHAL    +++
Sbjct: 683  LSRQHFRTFSARFEGLPIKVAQLSRMVTAKEAAQVKAGLADGSINIVVGTHALLAKGVEF 742

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L LVIVDE+  FGV  + +L       HVL +TATPIPRTL L   G  ++S I   P
Sbjct: 743  ADLGLVIVDEEQHFGVAHKERLKSLKADVHVLTLTATPIPRTLQLALTGVREMSVIATPP 802

Query: 453  AGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
              R  ++T I+P +   I E ++R +     G + + + P++E     +   +V R   +
Sbjct: 803  VDRLAVRTFIMPFDAVVIREALQRERF---RGGQVFCVVPRLE-----DLPKMVTRLADI 854

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + +   HGR++  + E VM  F +G   +L+AT ++E G+D+   + +II  A+ 
Sbjct: 855  VPE--ARVVQAHGRLTPTELERVMTEFGDGKFDILLATNIVESGLDMPAVNTLIIYRADM 912

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDL 625
            FGLAQL+QLRGRVGRG++     L +     LS  +  RL+V   L N   GF +A  DL
Sbjct: 913  FGLAQLYQLRGRVGRGKQRGYAYLTWPATQRLSPAAEKRLAVMQTLDNLGAGFTLASHDL 972

Query: 626  KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
              R  G +LG +QSG  + +    EL+  +LE A  D K
Sbjct: 973  DIRGAGNLLGDEQSGHIREVGI--ELYQQMLEEAVADIK 1009


>gi|285018831|ref|YP_003376542.1| transcription-repair coupling factor protein [Xanthomonas
           albilineans GPE PC73]
 gi|283474049|emb|CBA16550.1| probable transcription-repair coupling factor protein [Xanthomonas
           albilineans]
          Length = 1166

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 138/410 (33%), Positives = 221/410 (53%), Gaps = 21/410 (5%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL ++ + +   G+ + V+  + +      PF  T  Q +AI+  L+D++    M R++ 
Sbjct: 588 LLEIQARRQARAGLALQVDRAMYEPFAAGFPFEETPDQLAAIEATLRDLASSQPMDRVVC 647

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A  AA  AG Q  ++ P  +LA+QHY   +    +  + VE+++   
Sbjct: 648 GDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPLKVEVLSRFK 707

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                +  LE++A G   +I+GTH L Q  +++  L LVIVDE+ RFGV+Q+  L     
Sbjct: 708 STKEIKAELEKVAAGTIDVIVGTHRLLQADVRFKDLGLVIVDEEQRFGVRQKEALKALRA 767

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKV 477
             H+L +TATPIPRTL +   G  D+S I   P  R  ++T    + + D  +  E  + 
Sbjct: 768 NVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAVQTF---VTQWDNALLREAFQR 824

Query: 478 VLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            L+ G + Y++   +E   + +     +V           + I I HG+M + + E+VM 
Sbjct: 825 ELARGGQLYFLHNDVESIGRMQRELSVLVPE---------ARIGIAHGQMPERELETVML 875

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F+     +L++TT+IE GID+ +A+ I+I  A+ FGLAQLHQLRGRVGR    +   LL
Sbjct: 876 DFQKQRFNVLLSTTIIESGIDIPNANTIVINRADRFGLAQLHQLRGRVGRSHHRAYAYLL 935

Query: 596 Y--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
                 ++ ++  RL  + + ++   GF +A  DL+ R  GE+LG  QSG
Sbjct: 936 VPDQRSITADAQKRLDAIASMDELGAGFTLATHDLEIRGAGELLGEDQSG 985


>gi|219685734|ref|ZP_03540546.1| transcription-repair coupling factor [Borrelia garinii Far04]
 gi|219672729|gb|EED29756.1| transcription-repair coupling factor [Borrelia garinii Far04]
          Length = 1124

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 135/380 (35%), Positives = 210/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P
Sbjct: 580 PYDETLDQITAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  + +E+++  +     ++ L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPVKIEVLSRFIKNNSEKRILKELKSGEIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLSLSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE         +   
Sbjct: 760 IPPKNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEE---------LHYL 807

Query: 508 NSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            +L E  T  + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III
Sbjct: 808 KTLIEKLTPYARIAIIHGKLTGDEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIII 867

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620
            NA  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    D   GF I
Sbjct: 868 NNANKFGLAQLYQLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSDLGAGFKI 927

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A +D++ R  G +LG +Q G
Sbjct: 928 AMKDMEIRGVGNLLGREQHG 947


>gi|294054382|ref|YP_003548040.1| transcription-repair coupling factor [Coraliomargarita akajimensis
           DSM 45221]
 gi|293613715|gb|ADE53870.1| transcription-repair coupling factor [Coraliomargarita akajimensis
           DSM 45221]
          Length = 1133

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/377 (33%), Positives = 200/377 (53%), Gaps = 13/377 (3%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T  Q  AI    QDM +   M R++ GDVG GKT VA+ A   AV AG Q  ++ 
Sbjct: 573 FPFKETPDQLRAIDATKQDMEKAESMDRLICGDVGFGKTEVAIRAALKAVLAGKQVALLV 632

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +L QQH+   K+      +I+++++        ++ +   A G+  I+IGTH L   
Sbjct: 633 PTTVLCQQHFNTFKERMARYPVIIDMVSRFRTARQNKEIIANTAEGKIDIVIGTHRLLSK 692

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + +  L L+IVDE+ RFGV+Q+  + +      +L ++ATPIPRTL L   G   +S I
Sbjct: 693 DVHFNDLGLLIVDEEQRFGVKQKEAIKKLRADVDILTLSATPIPRTLYLAMAGARAMSVI 752

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R+PI+TV+   +    +   ++     G + +++  ++          V  +  
Sbjct: 753 ETPPVDRRPIQTVVRSYDPA-LIKSAIQAETDRGGQVFYLHNRV-----GTIEGVANQIR 806

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            +H     ++A+ HG+M++   E +M  F  G   +L+ TT+IE GID+ + + +IIE A
Sbjct: 807 EMHPKL--NVAVGHGQMTEGALEKIMTKFVAGEFDVLVCTTIIESGIDIPNCNTLIIEGA 864

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLAQL+Q+RGRVGR ++ +   LL   H  L   +  RL+ LK       GF IA  
Sbjct: 865 DRFGLAQLYQIRGRVGRFKQQAYAYLLLHRHAALVDQAQKRLNALKQHNQLGAGFRIAMR 924

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G +LG +QSG
Sbjct: 925 DLELRGAGNLLGSQQSG 941


>gi|319779214|ref|YP_004130127.1| Transcription-repair coupling factor [Taylorella equigenitalis
           MCE9]
 gi|317109238|gb|ADU91984.1| Transcription-repair coupling factor [Taylorella equigenitalis
           MCE9]
          Length = 1158

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 147/413 (35%), Positives = 222/413 (53%), Gaps = 31/413 (7%)

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL  MR+ +K    IP+    + ++       F  T  Q+ AI  +L+DM+    M R++
Sbjct: 582 ALRAMREGYK--FKIPLEDYHQFSE----GFDFEETPDQQQAIDSVLEDMASDKPMDRLV 635

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQ---NTQIIVEI 354
            GDVG GKT VAL A   AV    Q VI+ P  +LA+QH + FI ++     N  ++   
Sbjct: 636 CGDVGFGKTEVALRAAFIAVANNKQVVILCPTTLLAEQHAQTFIDRFADWPINVALLSRF 695

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
            TG        + +   + G   I+IGTH +  + +++  L L+I+DE+HRFGV+Q+  L
Sbjct: 696 RTGK----ELNETINGCSDGNVDIVIGTHKVLSNKVKFKSLGLIIIDEEHRFGVRQKEAL 751

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                   +L +TATPIPRTL ++  G  D+S I   P  R  IKT +    R D+   R
Sbjct: 752 KALRAEVDILTLTATPIPRTLSMSLEGIRDLSIIATAPQKRLAIKTFV---RREDKSTIR 808

Query: 475 LKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
             V+  L  G + Y++  +++     N ++++E    L E   + I + HG+MS+ + E+
Sbjct: 809 EAVLRELKRGGQLYFLHNEVDTIH--NRKAMLEEL--LPE---ARIGVAHGQMSERELEA 861

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM  F +    LL+ TT+IE GIDV  A+ III  A+  GLAQLHQLRGRVGR    +  
Sbjct: 862 VMKDFYHQRINLLLCTTIIETGIDVPTANTIIINRADKLGLAQLHQLRGRVGRSHHQAYA 921

Query: 593 ILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            LL      +++ +  RL  ++  E+   GF +A  DL+ R  GE+LG +QSG
Sbjct: 922 YLLTPGDEAITRQAKMRLEAIQAMEELGAGFYLAMHDLEIRGTGEVLGEQQSG 974


>gi|238927163|ref|ZP_04658923.1| transcription-repair coupling factor [Selenomonas flueggei ATCC
           43531]
 gi|238884945|gb|EEQ48583.1| transcription-repair coupling factor [Selenomonas flueggei ATCC
           43531]
          Length = 1097

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/383 (35%), Positives = 210/383 (54%), Gaps = 26/383 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI +I  DM  +  M R+L GDVG GKT VA+ A   A   G Q  ++ P
Sbjct: 549 PYQETDDQLRAIAEIKNDMESEKPMDRLLCGDVGFGKTEVAIRAAYKAAMDGYQVAVLVP 608

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF-QD 388
             +LAQQHY+       +    V+++        + + L  +A G+  I+IGTHA+  + 
Sbjct: 609 TTVLAQQHYQTFAARFADFAPKVDVVCRFRTLREQAETLRDVARGRVDILIGTHAILNRK 668

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++++KL L+IVDE+ RFGV Q+ ++ + A    VL ++ATPIPRTL ++  G  D+S I
Sbjct: 669 RVRFHKLGLLIVDEEQRFGVTQKERIKEFAAGVDVLTLSATPIPRTLHMSLAGARDMSVI 728

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIE-RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
              PA R P+++ ++  +  D V+   ++  LS G + Y+I  +            VE  
Sbjct: 729 ETPPAERLPVQSYVVESS--DAVMRGAIERELSRGGQIYFIYNR------------VESI 774

Query: 508 NSLHEHF-----TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + + EH       + IA  HG+MS+   E VM  F  G   +L+AT++IE GIDV +A+ 
Sbjct: 775 DRMREHLLQLVPQARIASAHGQMSEDILEQVMMDFYEGHYDILLATSIIENGIDVANANT 834

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DG 617
           III +A+ FGL+QL+Q+RGRVGR  +++     Y     LS+ +  RL  ++       G
Sbjct: 835 IIIYDADRFGLSQLYQMRGRVGRSAKMAFAYFTYRRDKVLSEMAEKRLQAMREFARLGSG 894

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F IA  DL+ R  G +LG +Q G
Sbjct: 895 FKIAMRDLEIRGAGSLLGAQQHG 917


>gi|254453067|ref|ZP_05066504.1| transcription-repair coupling factor [Octadecabacter antarcticus
           238]
 gi|198267473|gb|EDY91743.1| transcription-repair coupling factor [Octadecabacter antarcticus
           238]
          Length = 1154

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 141/403 (34%), Positives = 224/403 (55%), Gaps = 21/403 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++ L   P++ T  Q  AI+D+L ++     M R++ GDVG GKT VA+ A   A  +G 
Sbjct: 593 EQFLARFPYAETDDQLRAIEDVLDNLGSGKPMDRLVCGDVGFGKTEVAIRAAFVAAMSGV 652

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I+AP  +LA+QHY+   +  +   I V  ++  +         + +A G   I+IGT
Sbjct: 653 QVAIVAPTTLLARQHYKGFAERFRGFPINVRTLSRFVSAKEAALTKDGMAKGTVDIVIGT 712

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           HAL   +I++  L L+++DE+  FGVQ + +L Q  T  HVL +TATPIPRTL L+  G 
Sbjct: 713 HALLAKNIRFKDLGLLVIDEEQHFGVQHKERLKQMRTDIHVLTLTATPIPRTLQLSLSGV 772

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESN 499
            ++S I   P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  E  
Sbjct: 773 RELSIIGTPPVDRLAIRTY---VSEFDTVTIR-EALLREHYRGGQSFFVVPRISDLPE-- 826

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
               +E F    E    S  I  G+M+  + +  M++F +G   +L+ATT++E G+D+  
Sbjct: 827 ----IEAFIR-DEVPEVSFVIASGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPT 881

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED- 616
           A+ +I+  A+ FGLAQL+Q+RGRVGR +  +   L Y P   L+  +  RL VL + +  
Sbjct: 882 ANTMIVHRADMFGLAQLYQIRGRVGRSKARAYAYLTYKPRQKLTPQAEKRLRVLGSIDTL 941

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             GF +A +DL  R  G +LG +QSG  + +    EL+ S+LE
Sbjct: 942 GAGFTLASQDLDIRGAGNLLGEEQSGQMREV--GYELYQSMLE 982


>gi|197116614|ref|YP_002137041.1| transcription-repair coupling factor [Geobacter bemidjiensis Bem]
 gi|197085974|gb|ACH37245.1| transcription-repair coupling factor [Geobacter bemidjiensis Bem]
          Length = 1157

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 206/376 (54%), Gaps = 15/376 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q  AI  ++ DM     M R++ GDVG GKT VA+ A   +   G Q  I+ P 
Sbjct: 618 FEETPDQAQAIDQVIADMESPRPMDRLVCGDVGYGKTEVAMRAAFKSTLDGKQVAILVPT 677

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LAQQH E      ++  + VE+++       +++ LE +  G+  I+IGTH L Q  +
Sbjct: 678 TVLAQQHAESFASRLKDYPVRVEMLSRFRTPQQQKQILEGVKKGEVDIVIGTHRLLQKDV 737

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+IVDE+ RFGV  + +L Q      +L +TATPIPRTL ++ +G  D+S I  
Sbjct: 738 VFKDLGLLIVDEEQRFGVAHKERLKQFRAVVDILTLTATPIPRTLYMSLMGIRDLSIIDT 797

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R  IKT +      DE+I E +   L  G + +++  +++        ++ E    
Sbjct: 798 PPVDRLAIKTFV--SRSSDELIREAVLRELRRGGQVFFVHNRVQ-----TIGAMAEELKR 850

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           +     + IA+ HG+M++ + E VM SF +G   LL+ TT+IE G+D+  A+ +I+  A+
Sbjct: 851 IVPE--AKIAVGHGQMAEKELEQVMLSFMHGETNLLLCTTIIESGLDIPTANTLIVNRAD 908

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEED 624
            FGL+QL+QLRGRVGR +  +   LL      +S  +  RL +L+   +   GF IA  D
Sbjct: 909 TFGLSQLYQLRGRVGRSKSRAYAYLLIPGEGAISPEARERLKILQELTELGAGFRIATHD 968

Query: 625 LKQRKEGEILGIKQSG 640
           L+ R  G++LG +QSG
Sbjct: 969 LELRGAGDLLGARQSG 984


>gi|119386518|ref|YP_917573.1| transcription-repair coupling factor [Paracoccus denitrificans
           PD1222]
 gi|119377113|gb|ABL71877.1| transcription-repair coupling factor [Paracoccus denitrificans
           PD1222]
          Length = 1154

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 211/379 (55%), Gaps = 19/379 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T+ Q SAI D+ +D++    M R++ GDVG GKT VA+ A   A   G Q  ++AP
Sbjct: 601 PYAETEDQASAIADVAEDLAAGRPMDRLVVGDVGFGKTEVAMRAAFIAASQGRQVAVVAP 660

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH+    +  + T I V  ++  +      +  + +A G   I++GTHA+    
Sbjct: 661 TTLLARQHFRTFAERFRGTAINVRPLSRFVSAKDATETRKGLAEGTVDIVVGTHAVLSKQ 720

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+IVDE+  FGV  + +L +  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 721 VRFKNLGLLIVDEEQHFGVAHKERLKELRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 780

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+T +   +   I E + R K     G +++++ P++ +  E      VE +
Sbjct: 781 TPPVDRLSIRTYVSEFDGVTIREALLREKY---RGGQSFFVVPRLADLPE------VEEW 831

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             L EH    S  + HG+++  D +  M++F +    +L+ATT++E G+D+  A+ +++ 
Sbjct: 832 --LREHVPEVSTIVAHGQLAAGDLDRRMNAFYDRGADVLLATTIVESGLDIPTANTMVVW 889

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGLAQL+Q+RGRVGR +  + C L   P  PL+  +  RL  L   +    GF +A
Sbjct: 890 RADMFGLAQLYQIRGRVGRSKTRAYCYLTTKPRVPLTPQAMRRLKFLGAIDSLGAGFNLA 949

Query: 622 EEDLKQRKEGEILGIKQSG 640
            +DL  R  G +LG +QSG
Sbjct: 950 SQDLDLRGAGNLLGEEQSG 968


>gi|313148344|ref|ZP_07810537.1| transcription-repair coupling factor [Bacteroides fragilis 3_1_12]
 gi|313137111|gb|EFR54471.1| transcription-repair coupling factor [Bacteroides fragilis 3_1_12]
          Length = 1128

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/409 (33%), Positives = 219/409 (53%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+ QDM +   M R++ 
Sbjct: 529 LIKLYSQRREEKGFAYSPDSFLQRELEASFIYEDTPDQSKATADVKQDMERDMPMDRLVC 588

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  +   +     VE ++   
Sbjct: 589 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRDRLKGLPCRVEYLSRAR 648

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  ++ +  G  +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 649 TAAQAKAVIKGLETGDVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQMKV 708

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   +  +EVI + +   
Sbjct: 709 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFS--EEVIADAINFE 766

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +S   + + +  +I    E   ++++     L       IAI HG+M  ++ E ++  F 
Sbjct: 767 MSRNGQVFLVNNRIANLPE--LKAMI-----LRRIPDCRIAIGHGQMEPVELEQIIFGFV 819

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +LIATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  P
Sbjct: 820 NYDYDVLIATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-AP 878

Query: 599 PLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PLS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 879 PLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 927


>gi|90424109|ref|YP_532479.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            BisB18]
 gi|90106123|gb|ABD88160.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            BisB18]
          Length = 1172

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 143/412 (34%), Positives = 222/412 (53%), Gaps = 23/412 (5%)

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            V+  +  +     P+  T+ Q  AI+  L D+     M R++ GDVG GKT VAL A  A
Sbjct: 607  VQPHLYDEFCARFPYDETEDQLGAIQASLHDLESGKPMDRLVCGDVGFGKTEVALRATFA 666

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                G Q  ++ P  +LA+QH     +  +   + V   +  +P     K  + IA G  
Sbjct: 667  VAMEGKQVAVVVPTTLLARQHARNFTERFRGFPVNVGQASRLVPPKELAKVKKGIAEGAI 726

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I++GTHAL   SI++  L L++VDE+  FGV  + +L Q     HVL ++ATPIPRTL 
Sbjct: 727  DIVVGTHALLGKSIKFRDLGLIVVDEEQHFGVSHKERLKQLRAEVHVLTLSATPIPRTLQ 786

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEE 494
            L   G  D+S I   P  R  ++T + P +   I E + R +     G +A+++CP+IE+
Sbjct: 787  LALTGVRDLSIIASPPVDRLAVRTFVAPHDPLMIREALLRERY---RGGQAFYVCPRIED 843

Query: 495  KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                   + V+ F  L +H     +A+ HG+M     E +M +F +G   +L++TT++E 
Sbjct: 844  L------AGVKDF--LDKHVPEMKVAVAHGQMPPTVIEDIMSAFYDGKYDILLSTTIVES 895

Query: 554  GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSV 610
            G+D+ +A+ +I+  A+ FGLAQL+QLRGRVGR  ++ +  L   P    ++  +  RL V
Sbjct: 896  GLDIPNANTLIVHRADMFGLAQLYQLRGRVGR-SKLRAYALFTLPSQHQITAQAERRLKV 954

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            L++ E    GF +A  DL  R  G +LG +QSG  K +    EL+ S+LE A
Sbjct: 955  LQSLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGF--ELYQSMLEEA 1004


>gi|315122360|ref|YP_004062849.1| transcription-repair coupling factor [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495762|gb|ADR52361.1| transcription-repair coupling factor [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 1185

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 138/396 (34%), Positives = 218/396 (55%), Gaps = 23/396 (5%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + V   +  + ++  P   T+ QE A+  ++QD +  + M R++ GDVG GKT +AL A 
Sbjct: 607 LTVSQDLYSQFVKKFPHVETEDQEKAVDAVIQDFTSGHLMDRLICGDVGFGKTEIALRAA 666

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQ--AHRRKALERI 371
             AV  G Q  ++AP  +L +QH+    +  Q+  + IV +     P+  A  +KA   I
Sbjct: 667 FIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQDFPVRIVSVSRFVKPKEVALHKKA---I 723

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A GQ  I+IGTHAL    I +  L L+IVDE+  FGV+ +  L +  T  HVL ++ATPI
Sbjct: 724 AEGQVDIVIGTHALLDPKITFSNLGLIIVDEEQHFGVKHKEALKETHTGVHVLTLSATPI 783

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL L   G  ++S I+  P  R   +T I   + +  + E L      G +++++CP+
Sbjct: 784 PRTLQLAITGVRELSLISMPPINRIACRTSISIFDPL-LIRETLMREYYRGGQSFYVCPR 842

Query: 492 IEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           + +  +         ++ L        +A+ HG+MS  + E  M+ F      +L++T++
Sbjct: 843 LLDLDKC--------YDFLQSEVPELKVAMAHGQMSPKNLEETMNGFYERKYDILLSTSI 894

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTR 607
           +E G+D+ +A+ III+ A+ FGLAQL+QLRGRVGR  +ISS  L   P   PL+ ++  R
Sbjct: 895 VESGLDLPNANTIIIQRADMFGLAQLYQLRGRVGRS-KISSFALFLLPENKPLTSSAQKR 953

Query: 608 LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           L +L++      GF +A  DL  R  G +LG +QSG
Sbjct: 954 LRILQSLNTLGAGFQLASHDLDIRGTGNLLGEEQSG 989


>gi|166711350|ref|ZP_02242557.1| transcription-repair coupling factor [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 1154

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 147/430 (34%), Positives = 228/430 (53%), Gaps = 21/430 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +WT   R+  A D++      LL ++ + +   G+ + V+  + +      PF  T  Q 
Sbjct: 557 QWTKAKRK--AADKVRDVAAELLEIQARRRARAGLALQVDRAMYEPFAAGFPFEETADQL 614

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI   L+D+     M R++ GDVG GKT VA+ A  AA  AG Q  ++ P  +LA+QHY
Sbjct: 615 AAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHY 674

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              +    +  + VE+++        +  LE++A G   +IIGTH L Q  +++  L LV
Sbjct: 675 RNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQPDVKFKDLGLV 734

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S I   P  R  +
Sbjct: 735 VVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPPNRLAV 794

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T I   +   + E  +R    LS G + Y++   +E        S++     L E    
Sbjct: 795 QTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIMRMQRDLSELVPE 843

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ III  A+ FGLAQ
Sbjct: 844 ARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQ 903

Query: 576 LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF +A  DL+ R  
Sbjct: 904 LHQLRGRVGRSHHRAYAYLVVPDRRAMTSDAEKRLEAIASMDELGAGFTLATHDLEIRGA 963

Query: 631 GEILGIKQSG 640
           GE+LG  QSG
Sbjct: 964 GELLGEDQSG 973


>gi|311104675|ref|YP_003977528.1| transcription-repair coupling factor [Achromobacter xylosoxidans
           A8]
 gi|310759364|gb|ADP14813.1| transcription-repair coupling factor [Achromobacter xylosoxidans
           A8]
          Length = 1154

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 144/408 (35%), Positives = 208/408 (50%), Gaps = 17/408 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q     G   N+     Q       F  T  Q +AI+ ++ DM+    M R++ 
Sbjct: 580 LLALYAQRAAREGYAFNLPLNDYQAFAEGFGFEETVDQAAAIEAVIADMTSGRPMDRLVC 639

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH +       +  + V  ++   
Sbjct: 640 GDVGFGKTEVALRAAFLAVANGKQVALLCPTTLLAEQHAQTFSDRFADWPVKVVELSRFR 699

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                  A+E I  G+  I+IGTH +    +++ +L LVI+DE+HRFGV+Q+  L     
Sbjct: 700 SAKEVSAAVEGINDGRVDIVIGTHKILSKDVKFKRLGLVIIDEEHRFGVRQKEALKALRA 759

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV- 478
              VL +TATPIPRTL ++  G  D S I   P  R  IKT    + R D    R  ++ 
Sbjct: 760 EVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTF---VRREDGSTLREALLR 816

Query: 479 -LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            L  G + Y++  ++E     N R+ +E          + IA+ HG+M + + E VM  F
Sbjct: 817 ELKRGGQCYFLHNEVETIH--NRRARLEELVP-----EARIAVAHGQMPERELEQVMKGF 869

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY- 596
                 +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR    +   LL  
Sbjct: 870 YQQRYNVLLCTTIIETGIDVPSANTIVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTP 929

Query: 597 -HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
               ++ N+  RL  ++  E+   GF +A  DL+ R  GE+LG  QSG
Sbjct: 930 GEDAITNNAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEVLGDSQSG 977


>gi|289432962|ref|YP_003462835.1| transcription-repair coupling factor [Dehalococcoides sp. GT]
 gi|288946682|gb|ADC74379.1| transcription-repair coupling factor [Dehalococcoides sp. GT]
          Length = 1148

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/385 (34%), Positives = 208/385 (54%), Gaps = 17/385 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q++  +  +  T  Q  A+ D+ +DM +   M R++ GDVG GKT VA+ A   AV  G 
Sbjct: 598 QEMEASFSYVETPDQLKALYDVKEDMEKTRPMDRLILGDVGYGKTEVAIRAAFKAVMDGK 657

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY   ++      + VE+++    Q+ +++ +E +  G+  I IGT
Sbjct: 658 QVAVLVPTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQKEVVENLEKGEVDICIGT 717

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  I++  L LV++DE+ RFGV  +    +      VL ++ATPIPRTL ++ +G 
Sbjct: 718 HRLLQADIKFKDLGLVVIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSMVGV 777

Query: 443 IDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D+S I   P  R PIKTV+   +   I E I R    +    + +++  ++        
Sbjct: 778 RDMSIIETPPGERLPIKTVVAAFDERLIREAILR---EMERNGQVFFVNNRV-----MGI 829

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             + ER   L     + I I HG+M++    +VM  F      +L+ TT+IE G+DV +A
Sbjct: 830 NLLAERIQQLVPE--ARIGIGHGQMAEEKLAAVMADFVRHELDVLVCTTIIESGVDVPNA 887

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
           + +II  A+ FGL QL+QLRGRVGR  +++    LY     LS ++  RL  +    +  
Sbjct: 888 NTLIINRADRFGLTQLYQLRGRVGRSSQLAYAYFLYEKEKRLSGDAEKRLKTIYEAAELG 947

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640
            G+ IA +DL+ R  G +LG+KQSG
Sbjct: 948 AGYGIAMKDLEIRGAGTLLGVKQSG 972


>gi|224543056|ref|ZP_03683595.1| hypothetical protein CATMIT_02256 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523996|gb|EEF93101.1| hypothetical protein CATMIT_02256 [Catenibacterium mitsuokai DSM
           15897]
          Length = 1150

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 140/437 (32%), Positives = 225/437 (51%), Gaps = 25/437 (5%)

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
           +P+ AK+      AR R   D L    I L   R    ++ G     +G +  +      
Sbjct: 548 SPKWAKE-----KARVRQKVDGLADDLINLYAERM---RQPGFAFEPDGDLQLEFESEFG 599

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  A+++I +DM     M R+L GDVG GKT VAL A   A+ +  Q   + P 
Sbjct: 600 YELTPDQAQAVEEIKKDMETPRPMDRLLCGDVGFGKTEVALRACFKAIVSKKQCAFLCPT 659

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            IL+ QHY  ++K  +   + + ++        +++ L  +  G   +++GTH +    +
Sbjct: 660 TILSSQHYRTMQKRFEKFPVNIALLNRFTTTKEKKQILSDLKEGNIDLLVGTHRILSKDV 719

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+ +DE+ RFGV+Q+ K+        VL +TATPIPRTL ++ +G   +S+I  
Sbjct: 720 EFKDLGLLCIDEEQRFGVRQKEKIKNLRKTIDVLTLTATPIPRTLQMSIMGIRGLSQIET 779

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R P++T +   +   I +VIER    LS   + +++  + E     N   +     
Sbjct: 780 PPLNRLPVQTYVSEKSWALIKQVIER---ELSRNGQVFYLHNRTE-----NIYEIASTLQ 831

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +L  H  + I + HG+M   + E VM  F      +L+ TT+IE GID+ +A+ IIIENA
Sbjct: 832 TLLPH--ARIGVGHGQMDKTELEDVMTDFVEKKYDILVCTTIIETGIDIPNANTIIIENA 889

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEE 623
           + FGLAQL+Q++GRVGR   I+   LLY     +++ +  RL+ +K       G+ IA  
Sbjct: 890 DKFGLAQLYQIKGRVGRSARIAYAYLLYTKDRAMTEEAQKRLTAIKEFTQLGSGYKIAMR 949

Query: 624 DLKQRKEGEILGIKQSG 640
           DL  R  G+ILG +Q+G
Sbjct: 950 DLSIRGSGDILGGEQAG 966


>gi|254550004|ref|ZP_05140451.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            '98-R604 INH-RIF-EM']
          Length = 1234

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 207/375 (55%), Gaps = 13/375 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 647  FTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 706

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QH +   +      + ++ ++     A  R  ++ +A G   I+IGTH L Q  +
Sbjct: 707  TLLAEQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGV 766

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LV+VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 767  RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 826

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R P+ T + P +   ++   L+  L    +A+++       + S+  +   R   L
Sbjct: 827  PPEERYPVLTYVGPHDD-KQIAAALRRELLRDGQAFYV-----HNRVSSIDAAAARVREL 880

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + + + HG+M +   E+ +  F N    +L+ TT++E G+D+ +A+ +I+E A+ 
Sbjct: 881  VPE--ARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADT 938

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
            FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL
Sbjct: 939  FGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDL 998

Query: 626  KQRKEGEILGIKQSG 640
            + R  G +LGI+QSG
Sbjct: 999  EIRGAGNVLGIEQSG 1013


>gi|220904183|ref|YP_002479495.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868482|gb|ACL48817.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 1179

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 134/425 (31%), Positives = 226/425 (53%), Gaps = 24/425 (5%)

Query: 225 RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
           + R A +++ A  + +   RK  K   G   +  G++  +      F  T  Q  AI+D+
Sbjct: 583 KARKAIEKIAADLVEMYAYRKVTK---GFRYDPPGELYHEFEATFGFEETPDQAKAIQDV 639

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
           L DM +   M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QHY+  +  
Sbjct: 640 LDDMDRPRPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQHYQTFRAR 699

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                + V +++  +P+  +++ L+  A GQ  I+IGTH +    ++   L L+++DE+ 
Sbjct: 700 LAGFPVNVGLLSRFVPRPRQKEVLKAAAAGQIDILIGTHRILSSDVKLPNLTLLVLDEEQ 759

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII- 463
           RFGV+ + KL        VL +TATPIPRTL L+  G  ++S I   P  RKP+ + ++ 
Sbjct: 760 RFGVRHKEKLKALKKNVDVLTLTATPIPRTLQLSMSGIRELSIIETAPQDRKPVASAVLR 819

Query: 464 -PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAI 520
              N + +V+ER   +  EG + +W+  +++  E+     R +V           + + +
Sbjct: 820 KDDNVLRKVLER--EIEREG-QVFWVYNRVQGLERVAEYVRGLVP---------DARVGM 867

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG+MS+ + E  M  F +G   +L+ T+++E G+D   A+ ++++ A+ FGL QL+QLR
Sbjct: 868 AHGQMSEAELEDTMHKFWHGELDVLVCTSIVESGLDFPRANTLVVDQAQMFGLGQLYQLR 927

Query: 581 GRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
           GRVGR +  +    +      L+  +  RL ++ + +    GF +A EDL+ R  G ILG
Sbjct: 928 GRVGRSDRQAYAFFVVPDAERLTAVAEERLRIILDMDYLGAGFQVAMEDLRLRGAGNILG 987

Query: 636 IKQSG 640
             QSG
Sbjct: 988 EVQSG 992


>gi|157825985|ref|YP_001493705.1| transcription-repair coupling factor [Rickettsia akari str.
           Hartford]
 gi|157799943|gb|ABV75197.1| Transcription-repair coupling factor [Rickettsia akari str.
           Hartford]
          Length = 1121

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 144/441 (32%), Positives = 238/441 (53%), Gaps = 39/441 (8%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           +IAL L++   K+++     VE  + +  K   N PFS T+ Q +AI DI +D+     M
Sbjct: 540 EIALHLIQIAAKRKLNSSAAVEFDLEEYDKFCANFPFSETEDQLTAINDIKEDLRNGLLM 599

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346
            R++ GDVG GKT VA+ A+    ++      Q  ++ P  IL  QH+    E  K +  
Sbjct: 600 DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGL 659

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           N + +  +++    +  R +    +  G+ +II+GTH+L   +I+++ L L+I+DE+  F
Sbjct: 660 NIKQLSSVVSSKEAKIIRAE----LESGKINIIVGTHSLLHKNIKFFNLKLLIIDEEQHF 715

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  ++T+++P  
Sbjct: 716 GVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTMVMP-- 773

Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAII 521
             D VI R   +L E   G +++++  +I+  E  E   + +V            S  I 
Sbjct: 774 -FDSVIIR-DALLREHFRGGRSFYVVSRIKDIEDIEKQLKHIVPEL---------SYKIA 822

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M+    + VM  F  G   +L++TT+IE GID+ +A+ +II  A+  GL+QL+QLRG
Sbjct: 823 HGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHKADMLGLSQLYQLRG 882

Query: 582 RVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636
           R+GRG+      L    H  ++ +S  RL +++N+     GF IA  D+  R  G ++G 
Sbjct: 883 RIGRGKVRGYAYLTVANHKKMTSHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGE 942

Query: 637 KQSGMPKFLIAQPELHDSLLE 657
           +QSG  K +    EL+  +LE
Sbjct: 943 EQSGQIKEV--GTELYQEMLE 961


>gi|255010538|ref|ZP_05282664.1| putative transcription-repair coupling factor [Bacteroides fragilis
           3_1_12]
          Length = 1125

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/409 (33%), Positives = 219/409 (53%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+ QDM +   M R++ 
Sbjct: 526 LIKLYSQRREEKGFAYSPDSFLQRELEASFIYEDTPDQSKATADVKQDMERDMPMDRLVC 585

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  +   +     VE ++   
Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRDRLKGLPCRVEYLSRAR 645

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  ++ +  G  +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 646 TAAQAKAVIKGLETGDVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQMKV 705

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   +  +EVI + +   
Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFS--EEVIADAINFE 763

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +S   + + +  +I    E   ++++     L       IAI HG+M  ++ E ++  F 
Sbjct: 764 MSRNGQVFLVNNRIANLPE--LKAMI-----LRRIPDCRIAIGHGQMEPVELEQIIFGFV 816

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +LIATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  P
Sbjct: 817 NYDYDVLIATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-AP 875

Query: 599 PLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PLS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 876 PLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 924


>gi|163856004|ref|YP_001630302.1| transcription-repair coupling factor [Bordetella petrii DSM 12804]
 gi|163259732|emb|CAP42033.1| transcription-repair coupling factor [Bordetella petrii]
          Length = 1153

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 201/377 (53%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q +AI+ ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++ P 
Sbjct: 610 FEETADQSAAIQAVIADMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVANGKQVALLCPT 669

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH +       +  + V  ++          A++ I  G+  I+IGTH +    +
Sbjct: 670 TLLAEQHAQTFSDRFADWPVRVVELSRFRSSKEVADAVQGINDGRVDIVIGTHKILSKDV 729

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I  
Sbjct: 730 RFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIAT 789

Query: 451 KPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R  IKT    + R D   + E L   L  G +AY++  ++E     N R+ +E   
Sbjct: 790 APQKRLAIKTF---VRREDGSTIREALLRELKRGGQAYFLHNEVETIH--NRRARIEELV 844

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                  + IA+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A
Sbjct: 845 P-----EARIAVAHGQMPERELEQVMKGFYQQRYNVLLCTTIIETGIDVPTANTIVIHRA 899

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLAQLHQLRGRVGR    +   LL      ++ N+  RL  ++  E+   GF +A  
Sbjct: 900 DRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITSNAKKRLEAIQAMEELGSGFYLAMH 959

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  GE+LG  QSG
Sbjct: 960 DLEIRGTGEVLGESQSG 976


>gi|327542005|gb|EGF28505.1| Transcription-repair-coupling factor [Rhodopirellula baltica WH47]
          Length = 1140

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 147/478 (30%), Positives = 254/478 (53%), Gaps = 30/478 (6%)

Query: 210  HNPRKAK--DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
            + P+ AK     WT+  +   A    +A +  LL ++ +    +GIP++ + +  ++   
Sbjct: 541  NRPKLAKIGGISWTNQKKAAEAAVTDMADE--LLELQAKRATRLGIPMSPDNEWQRQFDA 598

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P+  T  Q SAI+ +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++
Sbjct: 599  SFPYLETPDQLSAIEALKIDMEAPRPMDRLICGDVGFGKTEVAMRAAFKAVSSGYQVAVL 658

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +LA+QHY+  ++      + +  ++     A +R+ ++ I  G+A I+IGTH +  
Sbjct: 659  VPTTVLAEQHYQSFRERMAEFPVEIRKLSRFCTPAEQRETVKEIRRGKADIVIGTHRVAS 718

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              +++  L LV++DE+ RFGV  + +L  + +   VL ++ATPIPRTL +  +G  DIS 
Sbjct: 719  KDVEFNNLGLVVIDEEQRFGVAVKERLKTRHSNVDVLTLSATPIPRTLHMALVGVRDISN 778

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKE--SNFRSV 503
            +   PA R  ++T    + R D+ + R  +V  L+ G + Y++  +I +  +  +  +++
Sbjct: 779  LETPPAERMAVET---KVTRWDDKMLRSAIVRELNRGGQMYFVHNRIGDMDDLAARIKAI 835

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            V             I I HG+M +   E +M  F +    +L+ATT+IE G+D+ +A+ +
Sbjct: 836  VPELR---------IGIGHGQMEEGALEQIMVDFIDHKFDMLLATTIIESGLDIPNANTM 886

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618
             I++   +GL+ LHQLRGRVGR +  + C LL  P   L+  +  RL  ++       GF
Sbjct: 887  FIDDGNRYGLSDLHQLRGRVGRYKHQAYCYLLVSPNKRLTPEASKRLRAIEEYSQMGAGF 946

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI---LTQDPDL 673
             I+  DL+ R  G +LG +QSG         E++  LLE A + A+ +   L+ D D+
Sbjct: 947  AISMRDLEIRGAGNLLGSQQSG--HIAAVGYEMYCQLLEDAVRQAQKLPPKLSADVDI 1002


>gi|73748965|ref|YP_308204.1| transcription-repair coupling factor [Dehalococcoides sp. CBDB1]
 gi|73660681|emb|CAI83288.1| transcription-repair coupling factor [Dehalococcoides sp. CBDB1]
          Length = 1148

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/385 (34%), Positives = 208/385 (54%), Gaps = 17/385 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q++  +  +  T  Q  A+ D+ +DM +   M R++ GDVG GKT VA+ A   AV  G 
Sbjct: 598 QEMEASFSYVETPDQLKALYDVKEDMEKTRPMDRLILGDVGYGKTEVAIRAAFKAVMDGK 657

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY   ++      + VE+++    Q+ +++ +E +  G+  I IGT
Sbjct: 658 QVAVLVPTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQKEVVENLEKGEVDICIGT 717

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  I++  L LV++DE+ RFGV  +    +      VL ++ATPIPRTL ++ +G 
Sbjct: 718 HRLLQADIKFKDLGLVVIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSMVGV 777

Query: 443 IDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D+S I   P  R PIKTV+   +   I E I R    +    + +++  ++        
Sbjct: 778 RDMSIIETPPGERLPIKTVVAAFDERLIREAILR---EMERNGQVFFVNNRV-----MGI 829

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             + ER   L     + I I HG+M++    +VM  F      +L+ TT+IE G+DV +A
Sbjct: 830 NLLAERIQQLVPE--ARIGIGHGQMAEEKLAAVMADFVRHELDVLVCTTIIESGVDVPNA 887

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
           + +II  A+ FGL QL+QLRGRVGR  +++    LY     LS ++  RL  +    +  
Sbjct: 888 NTLIINRADRFGLTQLYQLRGRVGRSSQLAYAYFLYEKEKRLSGDAEKRLKTIYEAAELG 947

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640
            G+ IA +DL+ R  G +LG+KQSG
Sbjct: 948 AGYGIAMKDLEIRGAGTLLGVKQSG 972


>gi|187477560|ref|YP_785584.1| transcription-repair coupling factor [Bordetella avium 197N]
 gi|115422146|emb|CAJ48670.1| transcription-repair coupling factor [Bordetella avium 197N]
          Length = 1145

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 145/408 (35%), Positives = 208/408 (50%), Gaps = 17/408 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q     G   N+     +       F  T  Q +AI+ ++ DM+    M R++ 
Sbjct: 571 LLALYAQRAAREGYAFNLPLSDYESFAEGFGFEETVDQSAAIQAVIMDMTSGKPMDRLVC 630

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH +       +  + V  ++   
Sbjct: 631 GDVGFGKTEVALRAAFLAVANGKQVALLCPTTLLAEQHAQTFSDRFADWPVRVVELSRFR 690

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                  A+E I  G+  I+IGTH +    +++ +L LVI+DE+HRFGV+Q+  L     
Sbjct: 691 SAKEVAAAVEGINDGRVDIVIGTHKILSKEVRFKRLGLVIIDEEHRFGVRQKEALKALRA 750

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID--EVIERLKV 477
              VL +TATPIPRTL ++  G  D S I   P  R  IKT    + R D   + E L  
Sbjct: 751 EVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTF---VRREDGSTIREALLR 807

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            L  G +AY++  ++E     N R+ +E          + I + HG+M + + E VM  F
Sbjct: 808 ELKRGGQAYFLHNEVETIH--NRRARLEELVP-----EARIGVAHGQMPERELEQVMKGF 860

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY- 596
                 +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR    +   LL  
Sbjct: 861 YQQRYNVLLCTTIIETGIDVPSANTIVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTP 920

Query: 597 -HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
               ++ N+  RL  ++  E+   GF +A  DL+ R  GEILG  QSG
Sbjct: 921 GEDAITANAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEILGDSQSG 968


>gi|294011405|ref|YP_003544865.1| transcription-repair coupling factor [Sphingobium japonicum UT26S]
 gi|292674735|dbj|BAI96253.1| transcription-repair coupling factor [Sphingobium japonicum UT26S]
          Length = 1154

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/401 (34%), Positives = 220/401 (54%), Gaps = 26/401 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q+ AI D+++D+     M R++ GDVG GKT VAL A   A  AG Q V++ P
Sbjct: 605 PYQETDDQDRAISDVIEDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMAGMQVVVICP 664

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH+   ++  +   + +  ++  +P    +     +A G   I++GTHAL    
Sbjct: 665 TTLLARQHHMNFEERFRGFPVKIGRLSRLVPDKEAKAVKAGLADGTVDIVVGTHALLAKG 724

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++ +L LVIVDE+ RFGV  + +L    T  HVL +TATPIPRTL +   G  ++S I 
Sbjct: 725 LEFKRLGLVIVDEEQRFGVTHKERLKSLKTDVHVLTLTATPIPRTLQMAMSGLRELSVIQ 784

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  ++T I+P    D V+ R + +L E   G +++++ P+I +  E      +E 
Sbjct: 785 TPPVDRLAVRTYIMP---WDGVVIR-EALLREHYRGGQSFFVVPRISDLTE------IEE 834

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F          + + HG+MS  + E  M +F +    +L++TT++E G+D+  A+ +II 
Sbjct: 835 FLRTEVPEVRPV-VAHGQMSATEVEERMSAFYDRRYDVLLSTTIVESGLDIPSANTLIIH 893

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFL 619
            A+ FGLAQL+QLRGRVGR +  +     +  P    +++ +  RL VL + +    GF 
Sbjct: 894 RADRFGLAQLYQLRGRVGRAK--TRAYAYFTTPANRVITETAEKRLKVLSDLDTLGAGFQ 951

Query: 620 IAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLE 657
           +A  DL  R  G ++G +QSG  K   F + Q  L D++LE
Sbjct: 952 LASHDLDIRGAGNLVGDEQSGHIKEVGFELYQSMLEDAILE 992


>gi|147669732|ref|YP_001214550.1| transcription-repair coupling factor [Dehalococcoides sp. BAV1]
 gi|146270680|gb|ABQ17672.1| transcription-repair coupling factor [Dehalococcoides sp. BAV1]
          Length = 1148

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/385 (34%), Positives = 208/385 (54%), Gaps = 17/385 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q++  +  +  T  Q  A+ D+ +DM +   M R++ GDVG GKT VA+ A   AV  G 
Sbjct: 598 QEMEASFSYVETPDQLKALYDVKEDMEKPRPMDRLILGDVGYGKTEVAIRAAFKAVMDGK 657

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY   ++      + VE+++    Q+ +++ +E +  G+  I IGT
Sbjct: 658 QVAVLVPTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQKEVVENLEKGEVDICIGT 717

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  I++  L LV++DE+ RFGV  +    +      VL ++ATPIPRTL ++ +G 
Sbjct: 718 HRLLQADIKFKDLGLVVIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSMVGV 777

Query: 443 IDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D+S I   P  R PIKTV+   +   I E I R    +    + +++  ++        
Sbjct: 778 RDMSIIETPPGERLPIKTVVAAFDERLIREAILR---EMERNGQVFFVNNRV-----MGI 829

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             + ER   L     + I I HG+M++    +VM  F      +L+ TT+IE G+DV +A
Sbjct: 830 NLLAERIQQLVPE--ARIGIGHGQMAEEKLAAVMADFVRHELDVLVCTTIIESGVDVPNA 887

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
           + +II  A+ FGL QL+QLRGRVGR  +++    LY     LS ++  RL  +    +  
Sbjct: 888 NTLIINRADRFGLTQLYQLRGRVGRSSQLAYAYFLYEKEKRLSGDAEKRLKTIYEAAELG 947

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640
            G+ IA +DL+ R  G +LG+KQSG
Sbjct: 948 AGYGIAMKDLEIRGAGTLLGVKQSG 972


>gi|313894846|ref|ZP_07828406.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312976527|gb|EFR41982.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 1094

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 143/420 (34%), Positives = 223/420 (53%), Gaps = 30/420 (7%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  AI++I +DM  +  M R+L GDVG GKT VA+ A   A   G Q  ++ P
Sbjct: 549 PYEETEDQLRAIEEIKRDMESERPMDRLLCGDVGFGKTEVAVRAAFKAAMDGFQVAVLVP 608

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHY+       +    V+++        + + L  +  G+  I+IGTHA+   +
Sbjct: 609 TTVLAQQHYQTFAARFADFAPKVDVVCRFRTPREQAETLREVERGRVDILIGTHAILNRT 668

Query: 390 -IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + + KL L+IVDE+ RFGV Q+ ++ + A    VL ++ATPIPRTL ++  G  D+S I
Sbjct: 669 RVHFRKLGLLIVDEEQRFGVTQKERIKEFAAGVDVLTLSATPIPRTLHMSLAGARDMSII 728

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
              PA R P+++ ++  +   +   IER    LS G + Y+I  +            VE 
Sbjct: 729 ETPPADRLPVQSYVVESSDAMMRGAIER---ELSRGGQVYFIYNR------------VES 773

Query: 507 FNSLHEHF-----TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            + + EH       + IA  HG+M++   E VM  F  G   +L+AT++IE GIDV +A+
Sbjct: 774 IDRMREHLLRLVPEARIATAHGQMNEDILEQVMMDFYEGHYDILLATSIIENGIDVANAN 833

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTED 616
            +II +A+ FGL+QL+Q+RGRVGR  +++     Y     LS+ +  RL  +K       
Sbjct: 834 TVIIYDADRFGLSQLYQMRGRVGRSAKMAFAYFTYRRDKVLSETAEKRLQAMKEFAQLGS 893

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           GF IA  DL+ R  G +LG +Q G         E++  LLE A    + +  + P++  V
Sbjct: 894 GFKIAMRDLEIRGAGSLLGAQQHG--HIAGVGFEMYVKLLEEAVAKRRGVAKESPEVEPV 951


>gi|309389992|gb|ADO77872.1| transcription-repair coupling factor [Halanaerobium praevalens DSM
           2228]
          Length = 1160

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 135/380 (35%), Positives = 202/380 (53%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q+ AI  +  DM     M R+L GDVG GKT VA+ A   A  A  Q  ++
Sbjct: 616 SFPFEETPDQKKAISALKSDMESIKPMDRLLCGDVGYGKTEVAIRAAFKAALASKQTAVL 675

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHY    +  +   + V I++     A +RK L+R+  G+  I+IGTH L  
Sbjct: 676 VPTTILAQQHYNTFSERIEEFPVRVGILSRFNTAAEQRKTLKRLIKGEIDILIGTHRLLS 735

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             + +  L L+I+DE+ RFGV  + KL        VL +TATPIPRTL +  +G  D+S 
Sbjct: 736 KDVIFADLGLLIIDEEQRFGVTHKEKLKDLKRNVDVLTLTATPIPRTLHMALVGVRDMSL 795

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           I   P  R PI+T I   N  + +   ++  L+   + Y++  +++  EK     + ++ 
Sbjct: 796 IETPPENRYPIRTFIKEDNS-ELITSAIRRELARNGQIYFVHNRVKDIEKTAGKLQKLMP 854

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + IA+ HG+M++   E +M  F      +L+ TT+IE G+D+ + + III
Sbjct: 855 E---------AKIAVAHGQMNEKRLEKIMYDFYQQKFDILVCTTIIETGLDIPNVNTIII 905

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLI 620
            +A+  GL+QL+QLRGRVGR   I+   LLY     L++ +  RL  +K       GF I
Sbjct: 906 NHADRMGLSQLYQLRGRVGRTNRIAYAYLLYEKDRILAEVAEKRLEAIKEFSSLGSGFKI 965

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  G +LG +QSG
Sbjct: 966 AMRDLEIRGAGNLLGPEQSG 985


>gi|315223854|ref|ZP_07865702.1| transcription-repair coupling factor [Capnocytophaga ochracea
           F0287]
 gi|314946184|gb|EFS98185.1| transcription-repair coupling factor [Capnocytophaga ochracea
           F0287]
          Length = 1109

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 208/378 (55%), Gaps = 17/378 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  A  ++  DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P 
Sbjct: 550 YEDTPDQSKATAEVKADMESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPT 609

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH++   +  ++  + ++ +        ++  LE +A+GQ  IIIGTH +  + +
Sbjct: 610 TVLAFQHFQTFSQRMKDFPVRIDYLNRFRTAKEKKIILEELANGQLDIIIGTHQIVGEKV 669

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            Y  L L+IVDE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S I  
Sbjct: 670 AYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLSVINT 729

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R PI + ++P +  +E+I + ++  +  G + +++  ++E  +E     +++R   
Sbjct: 730 PPPNRYPIDSQVVPFS--EEIIRDGIRYEIQRGGQVFFMHNRVENIQE--VAGMIQRLLP 785

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 + IAI HG+M     E  M +F +G   +L+ATT+IE G+DV +A+ I I NA 
Sbjct: 786 -----DARIAIGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNAH 840

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNTED---GFLIAEE 623
           +FGL+ LHQ+RGRVGR  + + C  +  PPL   S ++  R+  +    D   G  IA +
Sbjct: 841 NFGLSDLHQMRGRVGRSNKKAFCFFI-TPPLVAMSDDARKRIEAIAQFSDLGSGLNIAMK 899

Query: 624 DLKQRKEGEILGIKQSGM 641
           DL+ R  G++LG +QSG 
Sbjct: 900 DLEIRGAGDLLGGEQSGF 917


>gi|160888992|ref|ZP_02069995.1| hypothetical protein BACUNI_01412 [Bacteroides uniformis ATCC 8492]
 gi|156861459|gb|EDO54890.1| hypothetical protein BACUNI_01412 [Bacteroides uniformis ATCC 8492]
          Length = 1129

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/410 (33%), Positives = 219/410 (53%), Gaps = 19/410 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 531 LIKLYSQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSKATSDVKVDMESARPMDRLVC 590

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  K+  +     VE ++   
Sbjct: 591 GDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKERLKGLPCRVEYLSRAR 650

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                +  ++ +A G+ +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 651 TAVQAKAVVKGLAEGEVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQLKV 710

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I   P  R PI+T +   N  +E+I + +   
Sbjct: 711 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFN--EEIIADAVNFE 768

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + +++  +I    E   ++++ER      H     + I HG+M   + E ++  F
Sbjct: 769 MSRNGQVFFVNNRISNLVE--LKAMIER------HIPDCRVCIGHGQMEPAELEKIIFDF 820

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 821 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 879

Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PPLS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 880 PPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 929


>gi|23013145|ref|ZP_00053081.1| COG1200: RecG-like helicase [Magnetospirillum magnetotacticum MS-1]
          Length = 205

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 101/203 (49%), Positives = 142/203 (69%)

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S+  +  ER   L + F   + ++HGRM    K+ VM  F  G   +L+ATTVIEVG+DV
Sbjct: 3   SDLAAAEERHRHLSQMFGDRVGLVHGRMKPTAKDKVMAEFAAGNLDILVATTVIEVGVDV 62

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            +A+I++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PL + +  RL +++ TEDG
Sbjct: 63  PEANIMVIEHAERFGLAQLHQLRGRVGRGSRESRCLLLYGHPLGEIAKARLEIMRATEDG 122

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           F IAEEDL+ R  GE+LG +QSG+P+F +A   +H  LL  AR DA+ IL +DP+L S R
Sbjct: 123 FRIAEEDLRLRGGGEMLGTRQSGLPEFRLADLAIHGELLAAARDDARLILERDPELASPR 182

Query: 678 GQSIRILLYLYQYNEAFQFIRAG 700
           G+++R+LLYL++ + A + +R+G
Sbjct: 183 GEALRVLLYLFERDAAVRTLRSG 205


>gi|20808914|ref|NP_624085.1| transcription-repair coupling factor [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517574|gb|AAM25689.1| Transcription-repair coupling factor - superfamily II helicase
           [Thermoanaerobacter tengcongensis MB4]
          Length = 1169

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 152/463 (32%), Positives = 243/463 (52%), Gaps = 38/463 (8%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFK 248
           DL+QK   P+         NP K       EW    R+     E LA  +  L  ++Q  
Sbjct: 551 DLVQKYVGPT--------DNPPKLNKLGGGEWIRAKRKAKKAAEDLAKDLIELYAKRQMA 602

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  G   + +    ++     P+  T+ Q   IK+I +DM +   M R+L GDVG GKT 
Sbjct: 603 K--GHAFSPDTPWQKEFEDQFPYEETEDQLRCIKEIKEDMEKDKPMDRLLCGDVGYGKTE 660

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           VAL A   AV  G Q   + P  ILA QHY  F++++ +   + +E+++       + + 
Sbjct: 661 VALRAAFKAVADGKQVAFLCPTTILAYQHYTNFLERFKE-FPVKIEMLSRFRTPKEQAQI 719

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           ++ +A G   I++GTH L Q+ +++  L L+I+DE+ RFGV  + K+ +      VL ++
Sbjct: 720 IKGLADGTIDIVVGTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLS 779

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKK 484
           ATPIPRTL ++ +G  D+S +   P  R P++T ++  N  +E+I+    +L E   G +
Sbjct: 780 ATPIPRTLHMSLIGIRDMSILENPPEDRFPVETYVVEFN--EELIK--DAILREVGRGGQ 835

Query: 485 AYWICPQIEE-KKESNF-RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            Y++  +++  +K +NF + +V             IA+ HG+M +   E VM  F  G  
Sbjct: 836 VYFVYNRVQGIEKMANFIKELVP---------NCRIAVAHGQMEENKLEQVMVDFLKGEY 886

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--L 600
            +L+ TT+IE G+D+ + + II+ +A+  GLAQL+QLRGRVGR   ++     Y     L
Sbjct: 887 DVLVTTTIIETGLDIPNVNTIIVYDADKLGLAQLYQLRGRVGRSNRLAYAYFTYRKDKVL 946

Query: 601 SKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
           S+ +  RL  +K  TE   GF IA  DL+ R  G +LG +Q G
Sbjct: 947 SEVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHG 989


>gi|163746248|ref|ZP_02153606.1| transcription-repair coupling factor [Oceanibulbus indolifex
           HEL-45]
 gi|161380133|gb|EDQ04544.1| transcription-repair coupling factor [Oceanibulbus indolifex
           HEL-45]
          Length = 1156

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/399 (34%), Positives = 221/399 (55%), Gaps = 23/399 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q  AI D++ D++  N M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 594 PYTETDDQLRAIGDVVDDLTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVIAP 653

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+   +  +   I V  ++  +         + +A G   I+IGTHAL    
Sbjct: 654 TTLLARQHYKSFAERFRGFPIEVRQLSRFVSAKEATATRDGMAKGTVDIVIGTHALLAKG 713

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+++DE+  FGV  + +L    T  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 714 IRFKDLGLLVIDEEQHFGVSHKERLKSLRTDIHVLTLTATPIPRTLQLSLTGVRDLSVIG 773

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P++ + +E      +E 
Sbjct: 774 TPPVDRLSIRTY---VSEFDAVTIR-EALLREHYRGGQSFYVVPRLSDLRE------IED 823

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L       S  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++
Sbjct: 824 F--LQAQLPELSYVVAHGQMAPGELDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMVV 881

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
             A+ FGLAQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +
Sbjct: 882 HRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRAKLTDTAQKRLRVLGSLDTLGAGFTL 941

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           A +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 942 ASQDLDIRGAGNLLGEEQSGQMRDV--GFELYQSMLEEA 978


>gi|303237011|ref|ZP_07323583.1| transcription-repair coupling factor [Prevotella disiens
           FB035-09AN]
 gi|302482791|gb|EFL45814.1| transcription-repair coupling factor [Prevotella disiens
           FB035-09AN]
          Length = 1194

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/399 (31%), Positives = 215/399 (53%), Gaps = 13/399 (3%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           + E G   + +  +  ++  +  +  T  Q  A +++ QDM     M R++ GDVG GKT
Sbjct: 609 RHEKGFAFSPDSYLQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKT 668

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A   G Q  ++ P  +LA QHY+  KK  +N  + V+ ++        ++ 
Sbjct: 669 EVAVRAAFKAATDGKQVAVLVPTTVLAFQHYQTFKKRLKNMPVTVDYLSRARTAKQTKQV 728

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           +  ++ G+  I++GTH L   S+++  + L+I+DE+ +FGV  + KL Q  +    L M+
Sbjct: 729 ITDLSEGKIDILVGTHKLISKSVKWKDIGLLIIDEEQKFGVSTKEKLRQLKSNVDTLTMS 788

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL  + +G  D+S +   P  R PI+T I   +  + + + +   +S   + ++
Sbjct: 789 ATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEISTFS-AETIADAINFEMSRNGQVFF 847

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +  +I    E    S+++++          +AI HG+M   + E ++  F N    +L++
Sbjct: 848 VNDRIANLPE--LASLIKKYVP-----DCRVAIGHGQMKPEELEEIIIGFMNHDYDVLLS 900

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSY 605
           TT++E GID+ +A+ III +A  FGL+ LHQ+RGRVGR  + + C LL  P   L+ ++ 
Sbjct: 901 TTIVENGIDISNANTIIINDAHKFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNPDAR 960

Query: 606 TRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
            RL  L+   D   GF +A +DL  R  G +LG +QSG 
Sbjct: 961 RRLEALETFSDLGSGFNLAMQDLDIRGAGNLLGSEQSGF 999


>gi|289757102|ref|ZP_06516480.1| LOW QUALITY PROTEIN: transcription-repair coupling factor Mfd
           [Mycobacterium tuberculosis T85]
 gi|289712666|gb|EFD76678.1| LOW QUALITY PROTEIN: transcription-repair coupling factor Mfd
           [Mycobacterium tuberculosis T85]
          Length = 849

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 206/375 (54%), Gaps = 13/375 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F+ T  Q +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 262 FTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 321

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH +   +      + ++ ++     A  R  ++ +A G   I+IGTH L Q  +
Sbjct: 322 TLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGV 381

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 382 RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 441

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T + P +   ++   L+  L    +A+++       + S+  +   R   L
Sbjct: 442 PPEERYPVLTYVGPHDD-KQIAAALRRELLRDGQAFYV-----HNRVSSIDAAAARVREL 495

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + + + HG+M +   E+ +  F N    +L+ TT++E G+D+ +A+ +I+E A+ 
Sbjct: 496 VPE--ARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADT 553

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
           FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL
Sbjct: 554 FGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDL 613

Query: 626 KQRKEGEILGIKQSG 640
           + R  G +LGI+QSG
Sbjct: 614 EIRGAGNVLGIEQSG 628


>gi|160898289|ref|YP_001563871.1| transcription-repair coupling factor [Delftia acidovorans SPH-1]
 gi|160363873|gb|ABX35486.1| transcription-repair coupling factor [Delftia acidovorans SPH-1]
          Length = 1164

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 149/431 (34%), Positives = 222/431 (51%), Gaps = 21/431 (4%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            ++   +  F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   A+  G 
Sbjct: 601  EQFANDFGFEETADQRAAIHAVIQDMISPQPMDRLVCGDVGFGKTEVALRAAFVAITGGK 660

Query: 323  QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            Q   +AP  +LA+QHY+ +        I V  ++          A++ IA G   I++GT
Sbjct: 661  QVAFLAPTTLLAEQHYQTLVDRFSKWPIKVAEVSRFRSGKEITAAVKGIADGSVDIVVGT 720

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L  +S Q+  L L+I+DE+HRFGV+ +  +        VL +TATPIPRT+ +   G 
Sbjct: 721  HKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTMGMALEGL 780

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D+S I   P  R  IKT +   N    VI E +   L  G + Y++  ++E        
Sbjct: 781  RDLSVIATAPQRRLAIKTFV--RNEGTGVIREAVLRELKRGGQCYFLHNEVE-------- 830

Query: 502  SVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            ++  R   L E    + IA+ HG+M + + E VM  F      +L+ +T+IE GIDV  +
Sbjct: 831  TIENRKQKLEEILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPSS 890

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED-- 616
            + I+I  A+ FGLAQLHQLRGRVGR    +   L+      L+K +  RL  ++  E+  
Sbjct: 891  NTILISRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDLDSLTKQAQQRLEAIQQMEELG 950

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             GF +A  DL+ R  GE+LG  QSG    +    +L++ +L  A +  K    ++PDL S
Sbjct: 951  SGFYLAMHDLEIRGAGEVLGENQSG--NMMEVGFQLYNEMLSEAVRSLK--AGKEPDLLS 1006

Query: 676  VRGQSIRILLY 686
                S  I L+
Sbjct: 1007 PLSASTDINLH 1017


>gi|83311564|ref|YP_421828.1| transcription-repair coupling factor [Magnetospirillum magneticum
           AMB-1]
 gi|82946405|dbj|BAE51269.1| Transcription-repair coupling factor [Magnetospirillum magneticum
           AMB-1]
          Length = 1134

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 149/436 (34%), Positives = 233/436 (53%), Gaps = 26/436 (5%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           I +   RK  + E  +P   EG +  +     PF+ T+ Q  AI+D + D++    M R+
Sbjct: 557 IGIAAQRKMRQGEALVP--AEG-LYDEFCARFPFAETEDQMRAIEDSIADLASGKPMDRL 613

Query: 298 LQGDVGSGKTLVAL-IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           + GDVG GKT VA+ +A  AA++ G Q  ++ P  +LA+QHY   K+      + VE ++
Sbjct: 614 ICGDVGFGKTEVAMRVAFVAALQ-GLQVAVVVPTTLLARQHYRTFKERFSGLPVRVEQLS 672

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
             +      +    +A G   +++GTHAL    I + +L L+I+DE+  FGV  + +L Q
Sbjct: 673 RLVTAKTASEVKAGVADGSVDVVVGTHALLAKGIGFKRLGLLIIDEEQHFGVAHKERLKQ 732

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                HVL +TATPIPRTL +   G  ++S I   P  R  ++T ++P    D V+ R +
Sbjct: 733 LKADVHVLTLTATPIPRTLQMALSGVKEMSVIATPPIDRLAVRTFVLP---YDPVVLR-E 788

Query: 477 VVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            +L E   G + +++CP++     ++   V ER   L     +++A  HGR++  D E V
Sbjct: 789 SILRERYRGGQVFYVCPRL-----ADIDRVAERLAKLVPEVKTAVA--HGRLAPADLEEV 841

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE--ISS 591
           M +F      +L++T +IE GID+   + +II  A+ FGL QL+QLRGRVGRG+    + 
Sbjct: 842 MVAFGEKQYDVLLSTNIIESGIDMPSVNTLIIHRADMFGLGQLYQLRGRVGRGKTRGYAY 901

Query: 592 CILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
             L     LSK +  RL V++  +    GF +A  DL  R  G +LG +QSG  + +   
Sbjct: 902 FTLPNDKVLSKAAEKRLQVMQALDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIREVGV- 960

Query: 649 PELHDSLLEIARKDAK 664
            EL+  LLE A   AK
Sbjct: 961 -ELYQQLLEEAVAAAK 975


>gi|296169893|ref|ZP_06851505.1| transcription-repair coupling factor [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895449|gb|EFG75151.1| transcription-repair coupling factor [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 1201

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/377 (32%), Positives = 204/377 (54%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F+ T  Q +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 626 FTETVDQLTAITEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 685

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH +          + V+ ++     A  R  +E +A G   ++IGTH L Q  +
Sbjct: 686 TLLADQHLQTFTDRMAGFPVTVKGLSRFTDNAESRAVIEGLADGSVDVVIGTHRLLQTGV 745

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 746 RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 805

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
            P  R P+ T + P +   +V   L+  L    + +++  ++   ++  +  R +V    
Sbjct: 806 PPEERYPVLTYVGPQDD-KQVAAALRRELLRDGQVFYVHNRVSSIDRTAARIRELVPE-- 862

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                  + + + HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A
Sbjct: 863 -------ARVVVAHGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERA 915

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGL+QLHQLRGRVGR  E      LY  H PL++ +Y RL+ +    +   G  +A +
Sbjct: 916 DTFGLSQLHQLRGRVGRSRERGYAYFLYPPHAPLTETAYDRLATIAQNNELGAGMAVALK 975

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G +LG++QSG
Sbjct: 976 DLEIRGAGNVLGVEQSG 992


>gi|254459943|ref|ZP_05073359.1| transcription-repair coupling factor [Rhodobacterales bacterium
           HTCC2083]
 gi|206676532|gb|EDZ41019.1| transcription-repair coupling factor [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 1150

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 142/399 (35%), Positives = 220/399 (55%), Gaps = 23/399 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI D+L DM     M R++ GDVG GKT VA+ A   A  +G Q  I+AP
Sbjct: 594 PYQETDDQLGAIGDVLADMGSGQPMDRLVCGDVGFGKTEVAMRAAFIAAMSGVQVAIIAP 653

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+   +  +   I V  ++  +      +  +R+A G   I++GTHAL   +
Sbjct: 654 TTLLARQHYKSFAERFRGFPIEVRPLSRFVTTKDAEETRKRMADGTVDIVVGTHALLAKN 713

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            ++  L L+I+DE+  FGV  + +L    T  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 714 TKFNNLGLLIIDEEQHFGVGHKERLKALRTDIHVLTLTATPIPRTLQLSLSGVRDLSIIG 773

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  E      +E 
Sbjct: 774 TPPVDRLAIRTY---VSEFDAVTLR-EALLREHYRGGQSFYVVPRILDLPE------IET 823

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L E     S  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +I+
Sbjct: 824 F--LKEQLPELSYMVAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIV 881

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
             A+ FGLAQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +
Sbjct: 882 HRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRTKLTTTAEKRLRVLGSLDTLGAGFTL 941

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           A +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 942 ASQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEDA 978


>gi|255524039|ref|ZP_05391001.1| transcription-repair coupling factor [Clostridium carboxidivorans
           P7]
 gi|296186896|ref|ZP_06855297.1| transcription-repair coupling factor [Clostridium carboxidivorans
           P7]
 gi|255512326|gb|EET88604.1| transcription-repair coupling factor [Clostridium carboxidivorans
           P7]
 gi|296048610|gb|EFG88043.1| transcription-repair coupling factor [Clostridium carboxidivorans
           P7]
          Length = 1173

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 133/381 (34%), Positives = 218/381 (57%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q ++I+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q  ++ P
Sbjct: 625 PYEETPDQVTSIEDIKSDMESDKPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVALLVP 684

Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             ILAQQHY  F+++++ +  + +++I+     + ++  ++ +  G+  I+IGTH + Q 
Sbjct: 685 TTILAQQHYNNFVQRFS-DFPVKIDMISRFRTTSQQKATMKALKAGEIDILIGTHRIIQK 743

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +Q+  L L+IVDE+ RFGV  + K+ +      VL ++ATPIPRTL ++ +G  DIS I
Sbjct: 744 DVQFKDLGLLIVDEEQRFGVTHKEKIKKMKKNIDVLTLSATPIPRTLHMSLVGVRDISVI 803

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKE--SNFRSVV 504
              P  R P++T ++  N   I + I R    L+ G + Y++  ++E  KE  S    +V
Sbjct: 804 ETPPEERYPVQTYVVEYNEQLIRDAILR---ELNRGGQVYFVYNRVENIKEMASYMAKLV 860

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + +A+ HG+M + + E+++  F      +L+ATT+IE G+D+ + + +I
Sbjct: 861 PE---------ARVAVAHGQMQERELENIIVDFMKNEYDILVATTIIETGMDIQNVNTMI 911

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619
           I +++  GL+QL+QLRGRVGR   ++ C L Y     L++ +  RL  +K+ TE   GF 
Sbjct: 912 IYDSDKMGLSQLYQLRGRVGRTNRMAYCYLTYRKDKILTEVAEKRLKAIKDFTELGSGFK 971

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           IA +DL+ R  G ++G  Q G
Sbjct: 972 IALKDLEIRGAGNMMGSSQHG 992


>gi|227504114|ref|ZP_03934163.1| transcription-repair coupling factor [Corynebacterium striatum ATCC
            6940]
 gi|227199290|gb|EEI79338.1| transcription-repair coupling factor [Corynebacterium striatum ATCC
            6940]
          Length = 1220

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 135/431 (31%), Positives = 224/431 (51%), Gaps = 23/431 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G     +     ++  N P+  T+ Q 
Sbjct: 593  DWKNTKKKARAAVREIAGELVELYAKRQASP--GHQFAPDTPWQAEMEDNFPYIETEDQM 650

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  + +DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 651  LAIDAVKEDMESTVPMDRVVVGDVGYGKTEVAVRAAFKAVQDGMQVAVLVPTTLLAQQHA 710

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +  ++      + +++++        ++ +  +A G   I+IGTH L Q  + +  L L+
Sbjct: 711  DTFRERMTGFPVNIQVLSRFTSTKDAKEIVSGLADGSVDIVIGTHRLLQTGVHWKNLGLI 770

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +     +  VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 771  VVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 830

Query: 459  KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
             T +      +I   I R   +L +G + ++I  ++   EKK    R +V          
Sbjct: 831  LTYVGAYEDKQIAAAIRR--ELLRDG-QTFFIHNKVSDIEKKARELRELVPE-------- 879

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + I + HG+M++   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+
Sbjct: 880  -ARIVVAHGQMNEEALEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLS 938

Query: 575  QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
            QLHQLRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R 
Sbjct: 939  QLHQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRG 998

Query: 630  EGEILGIKQSG 640
             G +LG +QSG
Sbjct: 999  AGNVLGAQQSG 1009


>gi|124023141|ref|YP_001017448.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9303]
 gi|123963427|gb|ABM78183.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9303]
          Length = 1193

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 134/412 (32%), Positives = 221/412 (53%), Gaps = 22/412 (5%)

Query: 258  EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +G    ++  + P+ PT  Q  A+ D+ +DM     M R++ GDVG GKT VA+ A+  A
Sbjct: 608  DGPWQIELEESFPYEPTPDQVKAVVDVKRDMEAAQPMDRLVCGDVGFGKTEVAIRAIFKA 667

Query: 318  VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
            + +G Q  ++AP  +LAQQH+  +        I V ++      + R+  L  +  G   
Sbjct: 668  ITSGRQIAMLAPTTVLAQQHWRTLSDRFAPYPIKVALLNRFRTSSERKSILNGLKEGTID 727

Query: 378  IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             ++GTH L   +  + KL L++VDE+ RFGV Q+ K+        VL ++ATPIPRTL +
Sbjct: 728  AVVGTHQLLSKNTTFQKLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYM 787

Query: 438  TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EK 495
            +  G  ++S IT  P  R+PIKT +   +  + V   ++  L  G + +++ P++E  E 
Sbjct: 788  SLSGVREMSLITTPPPLRRPIKTHLAAFDE-EAVRSSIRQELDRGGQVFYVVPRVEGIED 846

Query: 496  KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              S  + ++     L         + HG+M++ + ES M +F  G   L++ TT++E G+
Sbjct: 847  VASQLQQMLPDLKLL---------VAHGQMAEGELESSMVAFNAGEADLMLCTTIVESGL 897

Query: 556  DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLK 612
            D+   + I+IE+A  FGLAQL+QLRGRVGR   + +   L++P    LS  +  RL  ++
Sbjct: 898  DIPRVNTILIEDAHKFGLAQLYQLRGRVGR-SGVQAHAWLFYPGDASLSDAARQRLRAIQ 956

Query: 613  ---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEI 658
                   G+ +A  D++ R  G +LG++QSG  +   F +    L +SL EI
Sbjct: 957  EFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEI 1008


>gi|289555197|ref|ZP_06444407.1| LOW QUALITY PROTEIN: transcription-repair coupling factor mfd
           [Mycobacterium tuberculosis KZN 605]
 gi|289439829|gb|EFD22322.1| LOW QUALITY PROTEIN: transcription-repair coupling factor mfd
           [Mycobacterium tuberculosis KZN 605]
          Length = 824

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 206/375 (54%), Gaps = 13/375 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F+ T  Q +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 237 FTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 296

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH +   +      + ++ ++     A  R  ++ +A G   I+IGTH L Q  +
Sbjct: 297 TLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGV 356

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 357 RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 416

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T + P +   ++   L+  L    +A+++       + S+  +   R   L
Sbjct: 417 PPEERYPVLTYVGPHDD-KQIAAALRRELLRDGQAFYV-----HNRVSSIDAAAARVREL 470

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + + + HG+M +   E+ +  F N    +L+ TT++E G+D+ +A+ +I+E A+ 
Sbjct: 471 VPE--ARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADT 528

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
           FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL
Sbjct: 529 FGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDL 588

Query: 626 KQRKEGEILGIKQSG 640
           + R  G +LGI+QSG
Sbjct: 589 EIRGAGNVLGIEQSG 603


>gi|41407085|ref|NP_959921.1| hypothetical protein MAP0987 [Mycobacterium avium subsp.
            paratuberculosis K-10]
 gi|41395436|gb|AAS03304.1| Mfd [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 1221

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 201/375 (53%), Gaps = 11/375 (2%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            ++ T  Q +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 644  YTETVDQLTAITEVKSDMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 703

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH +          + V+ ++     A  R  +E +A G   I+IGTH L Q  +
Sbjct: 704  TLLADQHLQTFTDRMAGFPVTVKGLSRFTDAAESRAVIEGLADGSVDIVIGTHRLLQTGV 763

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LV+VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 764  RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 823

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R P+ T + P +   +V   L+  L    +A+++       + S+      R   L
Sbjct: 824  PPEERYPVLTYVGPHDD-KQVAAALRRELLRDGQAFYV-----HNRVSSIDRAAARVREL 877

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                   + + HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A+ 
Sbjct: 878  VPEARVVVVVAHGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADT 937

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDL 625
            FGL+QLHQLRGRVGR  E      LY  H PL++ +Y RL+ +    +   G  +A +DL
Sbjct: 938  FGLSQLHQLRGRVGRSRERGYAYFLYPPHAPLTETAYDRLATIAQNNELGAGMAVALKDL 997

Query: 626  KQRKEGEILGIKQSG 640
            + R  G +LG++QSG
Sbjct: 998  EIRGAGNVLGVEQSG 1012


>gi|215429881|ref|ZP_03427800.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            EAS054]
 gi|260200049|ref|ZP_05767540.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            T46]
 gi|289442441|ref|ZP_06432185.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            T46]
 gi|289753081|ref|ZP_06512459.1| transcription-repair coupling factor Mfd [Mycobacterium tuberculosis
            EAS054]
 gi|289415360|gb|EFD12600.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            T46]
 gi|289693668|gb|EFD61097.1| transcription-repair coupling factor Mfd [Mycobacterium tuberculosis
            EAS054]
          Length = 1234

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 206/375 (54%), Gaps = 13/375 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 647  FTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 706

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH +   +      + ++ ++     A  R  ++ +A G   I+IGTH L Q  +
Sbjct: 707  TLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGV 766

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LV+VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 767  RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 826

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R P+ T + P +   ++   L+  L    +A+++       + S+  +   R   L
Sbjct: 827  PPEERYPVLTYVGPHDD-KQIAAALRRELLRDGQAFYV-----HNRVSSIDAAAARVREL 880

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + + + HG+M +   E+ +  F N    +L+ TT++E G+D+ +A+ +I+E A+ 
Sbjct: 881  VPE--ARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADT 938

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
            FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL
Sbjct: 939  FGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDL 998

Query: 626  KQRKEGEILGIKQSG 640
            + R  G +LGI+QSG
Sbjct: 999  EIRGAGNVLGIEQSG 1013


>gi|310639514|ref|YP_003944272.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2]
 gi|309244464|gb|ADO54031.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2]
          Length = 1175

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 209/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  AI++I +DM Q   M R+L GDVG GKT VA+ A   +   G Q  ++ P
Sbjct: 610 PYDETRDQVRAIEEIKKDMEQSRPMDRLLCGDVGYGKTEVAIRAAFKSAIEGKQVAVLVP 669

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE  ++        +++++    +  + +  + +  G   I+IGTH L    
Sbjct: 670 TTILAQQHYETFRERFSGYPFNIQVLSRFRSRKEQNETTKGVRQGTVDIVIGTHRLLSQD 729

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730 LVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIE 789

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T ++  ++  + E IER    ++ G + Y++  +++       + +    
Sbjct: 790 TPPENRFPVQTYVVEHSQTLVREAIER---EMARGGQVYYLYNRVQ-----GIQEMAAEI 841

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           N+L     + + + HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +
Sbjct: 842 NALVP--DAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHD 899

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+QLRGRVGR   I+     Y     L++ +  RL  +K  TE   GF IA 
Sbjct: 900 ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAM 959

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G +LG +Q G
Sbjct: 960 RDLSIRGAGNLLGAEQHG 977


>gi|167763421|ref|ZP_02435548.1| hypothetical protein BACSTE_01795 [Bacteroides stercoris ATCC
           43183]
 gi|167698715|gb|EDS15294.1| hypothetical protein BACSTE_01795 [Bacteroides stercoris ATCC
           43183]
          Length = 1128

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 135/409 (33%), Positives = 218/409 (53%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 531 LIKLYSQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSKATADVKADMESARPMDRLVC 590

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  K+  +     VE ++   
Sbjct: 591 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKERLKGLPCRVEYLSRAR 650

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  ++ +A G+ +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 651 TAAQTKSVVKGLAGGEVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQLKV 710

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L +TATPIPRTL  + +G  D+S I   P  R PI+T +      DE+I + +   
Sbjct: 711 NVDTLTLTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFG--DEIITDAINFE 768

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +S   + +++  +I    E   ++++ER           + I HG+M   + E ++  F 
Sbjct: 769 MSRNGQVFFVNNRISNLSE--LKAMIERNIP-----DCRVCIGHGQMEPAELEKIILDFV 821

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  P
Sbjct: 822 NYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-AP 880

Query: 599 PLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PLS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 881 PLSSLTLEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 929


>gi|329915573|ref|ZP_08276288.1| Transcription-repair coupling factor [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327544874|gb|EGF30242.1| Transcription-repair coupling factor [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 1120

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 149/423 (35%), Positives = 225/423 (53%), Gaps = 19/423 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  I+AP 
Sbjct: 576 FEETVDQAAAINAVIGDMTSGKPMDRLICGDVGFGKTEVALRATFVAVLGGKQVAILAPT 635

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH +       +  + +  ++          A++ +A G   I+IGTH L  D +
Sbjct: 636 TLLAEQHAQTFADRFADWPVKIAELSRFRSGKEINTAMKGMADGTLDIVIGTHKLLSDDV 695

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I  
Sbjct: 696 KFERLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSIIAT 755

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R  IKT +   +  + VI E     L  G + Y++  +++  +  N + ++E    
Sbjct: 756 APQKRLAIKTFV--RSEGESVIREACLRELKRGGQVYFLHNEVDTIE--NRKQMLEAL-- 809

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L E   + I + HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+
Sbjct: 810 LPE---ARIGVAHGQMHERELEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRAD 866

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEED 624
            FGLAQLHQLRGRVGR    +   LL H    L+K +  RL  ++  E+   GF +A  D
Sbjct: 867 KFGLAQLHQLRGRVGRSHHQAYAYLLVHDVAGLTKLAQRRLDAIQQMEELGSGFYLAMHD 926

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           L+ R  GE+LG  QSG    +  Q  ++  +L +A +  ++   ++PDL +    +  I 
Sbjct: 927 LEIRGAGEVLGDNQSGEMTEIGFQ--MYSDMLNLAVRSLRN--GKEPDLAAPLASTTEIN 982

Query: 685 LYL 687
           L++
Sbjct: 983 LHV 985


>gi|56418583|ref|YP_145901.1| transcription-repair coupling factor [Geobacillus kaustophilus
           HTA426]
 gi|56378425|dbj|BAD74333.1| transcription-repair coupling factor [Geobacillus kaustophilus
           HTA426]
          Length = 1177

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 207/381 (54%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I++I +DM     M R+L GDVG GKT VAL A   A+  G Q   + P
Sbjct: 621 PYQETEDQLRSIEEIKRDMESDKPMDRLLCGDVGYGKTEVALRAAFKAIMDGKQVAFLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE +++  Q   I V ++     +  + + ++ +  G   ++IGTH L    
Sbjct: 681 TTILAQQHYETVRERFQGFPIKVGLLNRFRTKKQQAETIKGLKDGTIDMVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S I 
Sbjct: 741 VEFKDLGLLIIDEEQRFGVAHKEKIKQLKANIDVLTLTATPIPRTLHMSMIGVRDLSIIE 800

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNFRSVV 504
             P  R P++T ++      + E IER    L+   + +++   IE+   K E   + V 
Sbjct: 801 TPPENRFPVQTYVMEYTPELVKEAIER---ELARDGQVFFLYNHIEDIDLKAEEIAQLVP 857

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           E          + +  +HGRMS+ + ES + +F  G   +L+ TT+IE GID+ + + +I
Sbjct: 858 E----------ARVTYVHGRMSETELESTILAFLEGQYDVLVTTTIIETGIDIPNVNTLI 907

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619
           + +A+  GL+QL+QLRGRVGR   ++     Y     L++ +  RL  +K  TE   GF 
Sbjct: 908 VYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEAAEKRLQAIKEFTELGSGFK 967

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           IA  DL  R  G ILG +Q G
Sbjct: 968 IAMRDLSIRGAGNILGAEQHG 988


>gi|171058689|ref|YP_001791038.1| transcription-repair coupling factor [Leptothrix cholodnii SP-6]
 gi|170776134|gb|ACB34273.1| transcription-repair coupling factor [Leptothrix cholodnii SP-6]
          Length = 1155

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 146/415 (35%), Positives = 215/415 (51%), Gaps = 21/415 (5%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   AV  G Q  ++AP 
Sbjct: 600  FEETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQVALLAPT 659

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QHY+ +        + V  I+        +  L+ +A G   I++GTH L     
Sbjct: 660  TLLAEQHYQTLADRFAQWPVKVAEISRFRSTKEVKATLDGLAAGTVDIVVGTHKLLSPDS 719

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L L+I+DE+HRFGV+ + ++        VL +TATPIPRTL +   G  D+S I  
Sbjct: 720  KFKNLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSVIAT 779

Query: 451  KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R  IKT +   N     I E +   L  G + Y++  +++        ++  R   
Sbjct: 780  APQRRLAIKTFVR--NETGGTIREAVMRELKRGGQVYFLHNEVD--------TIENRRQK 829

Query: 510  LHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L E    + IA+ HG+M + + E VM  F      +L+ +T+IE GIDV  A+ I+I  A
Sbjct: 830  LEEMLPEARIAVAHGQMPERELERVMRDFVAQRHNVLLCSTIIETGIDVPSANTIVISRA 889

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEE 623
            + FGLAQLHQLRGRVGR    +   LL      L+K +  RL  ++  E+   GF +A  
Sbjct: 890  DKFGLAQLHQLRGRVGRSHHQAYAYLLVPDTEGLTKQAQQRLDAIQAMEELGSGFYLAMH 949

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            DL+ R  GE+LG  QSG    +    +L++ +L  A +  K    ++PDL S  G
Sbjct: 950  DLEIRGAGEVLGDNQSG--NMMEVGFQLYNEMLAEAVRAMK--AGEEPDLLSPTG 1000


>gi|33861396|ref|NP_892957.1| transcriptional-repair coupling factor [Prochlorococcus marinus
            subsp. pastoris str. CCMP1986]
 gi|33633973|emb|CAE19298.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
            subsp. pastoris str. CCMP1986]
          Length = 1171

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 131/425 (30%), Positives = 231/425 (54%), Gaps = 18/425 (4%)

Query: 258  EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +G   +++  + P+  T  Q +A+K++  DM     M R++ GDVG GKT VA+ A+  A
Sbjct: 600  DGPWQKELEESFPYQATPDQITAVKEVKIDMESDKPMDRLVCGDVGFGKTEVAVRAIFKA 659

Query: 318  VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
            + +G Q +++AP  ILAQQH+           I V ++        ++     + + +  
Sbjct: 660  ITSGKQVILLAPTTILAQQHWRTFYNRFSPYPIKVSLLNRFKTNTEKKDIYNGLKNNKID 719

Query: 378  IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +++ TH +    I+   L L+++DE+ RFGV+Q+ K+    T   VL ++ATPIPRTL +
Sbjct: 720  LVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKNIKTNIDVLTLSATPIPRTLYM 779

Query: 438  TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +  G   +S +   P  R+ IKT +  I+ +D +   +   L  G + +++ P+I     
Sbjct: 780  SLSGLRQMSLLNTPPPSRRSIKTYLSEID-MDVIRTAISQELDRGGQIFYVLPRI----- 833

Query: 498  SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            S+    V +  ++ +     +A  HG+M++ID E+ M +F NG   L+I TT+IE G+D+
Sbjct: 834  SDIDQAVNKLKNMFKDLKYIVA--HGQMNEIDLENAMIAFNNGEVDLMICTTIIESGLDI 891

Query: 558  VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVLKNT 614
               + I+IE++  FGL+QL+QLRGRVGR   I +   L++P ++K    S  RL  +K+ 
Sbjct: 892  PRVNTIVIEDSHKFGLSQLYQLRGRVGRS-GIQAHAWLFYPNINKINEASKQRLKAIKDF 950

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILT 668
             +   G+ +A +D++ R  G +LG +QSG      + +    LH+++ EI  ++   +  
Sbjct: 951  SELGSGYQLAMKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEINGQEVPEVND 1010

Query: 669  QDPDL 673
               DL
Sbjct: 1011 TQVDL 1015


>gi|169628250|ref|YP_001701899.1| transcription-repair coupling factor [Mycobacterium abscessus ATCC
            19977]
 gi|169240217|emb|CAM61245.1| Probable transcription-repair coupling factor (TrcF) [Mycobacterium
            abscessus]
          Length = 1216

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 203/377 (53%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 647  FVETVDQLTAITEVKSDMEKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 706

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH +     T    + V  ++        +  +E +A G   I+IGTH L Q  +
Sbjct: 707  TLLADQHLQTFTNRTAGFPVKVAGLSRFTDPLTSKLVVEGMADGSVDIVIGTHRLLQTGV 766

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 767  RWKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 826

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T + P +   +V   L+  L    +A+++  ++   +K  +  R +V    
Sbjct: 827  PPEERYPVLTYVGPHDD-KQVAAALRRELLRDGQAFYVHNRVSTIDKAAARIRDLVPE-- 883

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + + + HG+M +   E  +  F N    +L+ TT+IE G+D+ +A+ +I+E A
Sbjct: 884  -------ARVVVAHGQMPEEMLERTVQGFWNREYDILVCTTIIETGLDISNANTLIVERA 936

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
            + FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RLS +    D   G  +A +
Sbjct: 937  DIFGLSQLHQLRGRVGRSRERGYAYFLYSPEVPLTETAYDRLSTIAQNNDLGAGMAVAMK 996

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG++QSG
Sbjct: 997  DLEIRGAGNVLGVEQSG 1013


>gi|260204238|ref|ZP_05771729.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            K85]
 gi|289573660|ref|ZP_06453887.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            K85]
 gi|289538091|gb|EFD42669.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            K85]
          Length = 1234

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 206/375 (54%), Gaps = 13/375 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 647  FTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 706

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH +   +      + ++ ++     A  R  ++ +A G   I+IGTH L Q  +
Sbjct: 707  TLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGV 766

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LV+VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 767  RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 826

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R P+ T + P +   ++   L+  L    +A+++       + S+  +   R   L
Sbjct: 827  PPEERYPVLTYVGPHDD-KQIAAALRRELLRDGQAFYV-----HNRVSSIDAAAARVREL 880

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + + + HG+M +   E+ +  F N    +L+ TT++E G+D+ +A+ +I+E A+ 
Sbjct: 881  VPE--ARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADT 938

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
            FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL
Sbjct: 939  FGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDL 998

Query: 626  KQRKEGEILGIKQSG 640
            + R  G +LGI+QSG
Sbjct: 999  EIRGAGNVLGIEQSG 1013


>gi|323691738|ref|ZP_08105998.1| transcription-repair coupling factor [Clostridium symbiosum
           WAL-14673]
 gi|323504216|gb|EGB20018.1| transcription-repair coupling factor [Clostridium symbiosum
           WAL-14673]
          Length = 1179

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/371 (34%), Positives = 207/371 (55%), Gaps = 15/371 (4%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q  AI+   +DM  K  M R++ GDVG GKT +AL A   A++ G Q V + P  ILAQ
Sbjct: 632 DQLEAIESTKRDMESKKIMDRLICGDVGYGKTEIALRAAFKAIQEGKQVVYLVPTTILAQ 691

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY    +  ++  + V++++       +++ LE +  G   ++IGTH +    + +  L
Sbjct: 692 QHYNTFVQRMKDFPVRVDMMSRFRTATEQKRTLEDLKKGFVDVLIGTHRVLSKDVVFKNL 751

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S + E P  R
Sbjct: 752 GLLIIDEEQRFGVAHKEKIKQLKENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPVDR 811

Query: 456 KPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            PI+T ++  N  DE++ E +   L+ G + Y++  ++     +N   +     +L    
Sbjct: 812 LPIQTYVMEYN--DEMVREAIHRELARGGQVYYVYNRV-----NNIDEITNHVAALVPE- 863

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            +++   HG+M + + E +M  F NG   +L++TT+IE G+D+ +A+ III +A+  GL+
Sbjct: 864 -ANVTFAHGQMHEHELERIMLDFVNGDIDVLVSTTIIETGLDIPNANTIIIHDADRLGLS 922

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+Q+RGRVGR    S   L+Y     L + +  RL  ++  TE   G  IA  DL+ R 
Sbjct: 923 QLYQIRGRVGRSNRTSYAFLMYRRDKLLREEAEKRLQAIREFTELGSGIKIAMRDLELRG 982

Query: 630 EGEILGIKQSG 640
            G ILG +Q G
Sbjct: 983 AGNILGAEQHG 993


>gi|288574800|ref|ZP_06393157.1| transcription-repair coupling factor [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570541|gb|EFC92098.1| transcription-repair coupling factor [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 1014

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/397 (32%), Positives = 212/397 (53%), Gaps = 19/397 (4%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   + +G+  ++  R+ P   T  Q  AI D+ +DM     M R++ GDVG GKT VAL
Sbjct: 467 GHAFSPDGEAMEEFERSFPHEETIDQLKAISDVKKDMESPRPMDRLVVGDVGYGKTEVAL 526

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A+  A   G Q +++ P  +LAQQHY   +       + VE+++  + Q  + + L  +
Sbjct: 527 RAVFKAAMDGFQVLVLVPTTVLAQQHYMTFRSRMGPFPLKVELLSRFVSQRRQNEILTGL 586

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A G   ++IGTH L Q+ ++  +L L+IVDE+HRFGV  + +  +  +   VL ++ATPI
Sbjct: 587 ADGSVDVVIGTHRLLQNDLKIRRLGLIIVDEEHRFGVAHKERFRKLRSGVDVLTLSATPI 646

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWIC 489
           PRT  +   G  D+S I E P G +P   +I      D+ + R  L   ++ G + Y + 
Sbjct: 647 PRTFSMAMKGMRDVS-IIETPPGNRP--AIITVTGAWDDGLVRKALAREMARGGQVYMLH 703

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            ++         ++ ER   +   F    +A  HGRM + + E  M +F +G   +L+ T
Sbjct: 704 NRVG--------TIEERAGWVKSRFPDVRVAFAHGRMRENELEETMMAFYDGEIDILVCT 755

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYT 606
           T++E G+DV  A+ ++++++   GLAQ+HQLRGRVGR ++ +    LY     L  ++  
Sbjct: 756 TIVESGLDVGRANTLVVDDSRLLGLAQMHQLRGRVGRRDDTAYAFFLYPSDCVLPHSTAE 815

Query: 607 RLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           RL  +        G+ +A+EDL  R  G++LG+ Q G
Sbjct: 816 RLDAIGRLSFQGAGYELAKEDLHIRGGGDLLGMSQHG 852


>gi|15608160|ref|NP_215536.1| transcription-repair coupling factor Mfd (TRCF) [Mycobacterium
            tuberculosis H37Rv]
 gi|15840448|ref|NP_335485.1| transcription-repair coupling factor [Mycobacterium tuberculosis
            CDC1551]
 gi|31792211|ref|NP_854704.1| transcription-repair coupling factor Mfd (TRCF) [Mycobacterium bovis
            AF2122/97]
 gi|121636949|ref|YP_977172.1| putative transcription-repair coupling factor mfd [Mycobacterium
            bovis BCG str. Pasteur 1173P2]
 gi|148660802|ref|YP_001282325.1| transcription-repair coupling factor [Mycobacterium tuberculosis
            H37Ra]
 gi|148822229|ref|YP_001286983.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            F11]
 gi|167968120|ref|ZP_02550397.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            H37Ra]
 gi|215402835|ref|ZP_03415016.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            02_1987]
 gi|224989421|ref|YP_002644108.1| putative transcription-repair coupling factor [Mycobacterium bovis
            BCG str. Tokyo 172]
 gi|253799950|ref|YP_003032951.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            KZN 1435]
 gi|254363936|ref|ZP_04979982.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            str. Haarlem]
 gi|260185931|ref|ZP_05763405.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            CPHL_A]
 gi|289446601|ref|ZP_06436345.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            CPHL_A]
 gi|289744756|ref|ZP_06504134.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            02_1987]
 gi|297633546|ref|ZP_06951326.1| transcription-repair coupling factor [Mycobacterium tuberculosis KZN
            4207]
 gi|297730531|ref|ZP_06959649.1| transcription-repair coupling factor [Mycobacterium tuberculosis KZN
            R506]
 gi|306775155|ref|ZP_07413492.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu001]
 gi|306781930|ref|ZP_07420267.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu002]
 gi|306783715|ref|ZP_07422037.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu003]
 gi|306788070|ref|ZP_07426392.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu004]
 gi|306792403|ref|ZP_07430705.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu005]
 gi|306796806|ref|ZP_07435108.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu006]
 gi|306802692|ref|ZP_07439360.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu008]
 gi|306806871|ref|ZP_07443539.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu007]
 gi|306967072|ref|ZP_07479733.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu009]
 gi|306971262|ref|ZP_07483923.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu010]
 gi|307078991|ref|ZP_07488161.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu011]
 gi|307083551|ref|ZP_07492664.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu012]
 gi|313657860|ref|ZP_07814740.1| transcription-repair coupling factor [Mycobacterium tuberculosis KZN
            V2475]
 gi|54037787|sp|P64327|MFD_MYCBO RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|54041091|sp|P64326|MFD_MYCTU RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|3261715|emb|CAB06859.1| PROBABLE TRANSCRIPTION-REPAIR COUPLING FACTOR MFD (TRCF)
            [Mycobacterium tuberculosis H37Rv]
 gi|13880619|gb|AAK45299.1| transcription-repair coupling factor [Mycobacterium tuberculosis
            CDC1551]
 gi|31617799|emb|CAD93908.1| PROBABLE TRANSCRIPTION-REPAIR COUPLING FACTOR MFD (TRCF)
            [Mycobacterium bovis AF2122/97]
 gi|121492596|emb|CAL71064.1| Probable transcription-repair coupling factor mfd [Mycobacterium
            bovis BCG str. Pasteur 1173P2]
 gi|134149450|gb|EBA41495.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            str. Haarlem]
 gi|148504954|gb|ABQ72763.1| transcription-repair coupling factor [Mycobacterium tuberculosis
            H37Ra]
 gi|148720756|gb|ABR05381.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            F11]
 gi|224772534|dbj|BAH25340.1| putative transcription-repair coupling factor [Mycobacterium bovis
            BCG str. Tokyo 172]
 gi|253321453|gb|ACT26056.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            KZN 1435]
 gi|289419559|gb|EFD16760.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            CPHL_A]
 gi|289685284|gb|EFD52772.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            02_1987]
 gi|308216305|gb|EFO75704.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu001]
 gi|308325321|gb|EFP14172.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu002]
 gi|308331498|gb|EFP20349.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu003]
 gi|308335304|gb|EFP24155.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu004]
 gi|308339112|gb|EFP27963.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu005]
 gi|308342784|gb|EFP31635.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu006]
 gi|308346693|gb|EFP35544.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu007]
 gi|308350608|gb|EFP39459.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu008]
 gi|308355241|gb|EFP44092.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu009]
 gi|308359196|gb|EFP48047.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu010]
 gi|308363098|gb|EFP51949.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu011]
 gi|308366762|gb|EFP55613.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu012]
 gi|323720520|gb|EGB29602.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            CDC1551A]
 gi|326904753|gb|EGE51686.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            W-148]
 gi|328459693|gb|AEB05116.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            KZN 4207]
          Length = 1234

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 206/375 (54%), Gaps = 13/375 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 647  FTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 706

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH +   +      + ++ ++     A  R  ++ +A G   I+IGTH L Q  +
Sbjct: 707  TLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGV 766

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LV+VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 767  RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 826

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R P+ T + P +   ++   L+  L    +A+++       + S+  +   R   L
Sbjct: 827  PPEERYPVLTYVGPHDD-KQIAAALRRELLRDGQAFYV-----HNRVSSIDAAAARVREL 880

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + + + HG+M +   E+ +  F N    +L+ TT++E G+D+ +A+ +I+E A+ 
Sbjct: 881  VPE--ARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADT 938

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
            FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL
Sbjct: 939  FGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDL 998

Query: 626  KQRKEGEILGIKQSG 640
            + R  G +LGI+QSG
Sbjct: 999  EIRGAGNVLGIEQSG 1013


>gi|215410623|ref|ZP_03419431.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            94_M4241A]
 gi|298524516|ref|ZP_07011925.1| transcription-repair coupling factor [Mycobacterium tuberculosis
            94_M4241A]
 gi|298494310|gb|EFI29604.1| transcription-repair coupling factor [Mycobacterium tuberculosis
            94_M4241A]
          Length = 1234

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 206/375 (54%), Gaps = 13/375 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 647  FTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 706

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH +   +      + ++ ++     A  R  ++ +A G   I+IGTH L Q  +
Sbjct: 707  TLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGV 766

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LV+VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 767  RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 826

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R P+ T + P +   ++   L+  L    +A+++       + S+  +   R   L
Sbjct: 827  PPEERYPVLTYVGPHDD-KQIAAALRRELLRDGQAFYV-----HNRVSSIDAAAARVREL 880

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + + + HG+M +   E+ +  F N    +L+ TT++E G+D+ +A+ +I+E A+ 
Sbjct: 881  VPE--ARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADT 938

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
            FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL
Sbjct: 939  FGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDL 998

Query: 626  KQRKEGEILGIKQSG 640
            + R  G +LGI+QSG
Sbjct: 999  EIRGAGNVLGIEQSG 1013


>gi|118471657|ref|YP_889663.1| transcription-repair coupling factor [Mycobacterium smegmatis str.
            MC2 155]
 gi|118172944|gb|ABK73840.1| transcription-repair coupling factor [Mycobacterium smegmatis str.
            MC2 155]
          Length = 1215

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 205/377 (54%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 641  FTETIDQLTAIQEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 700

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH +          + V+ ++     A  R  +E +  G   ++IGTH L Q  +
Sbjct: 701  TLLADQHLQTFTNRMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGV 760

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L L+IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 761  TWKDLGLIIVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 820

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T + P +   +V   L+  L    +A++I  ++   ++  +  R +V    
Sbjct: 821  PPEERYPVLTYVGPHDD-KQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPE-- 877

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + + + HG+M++   E  ++ F N    +L+ TT++E G+D+ +A+ +I+E A
Sbjct: 878  -------ARVVVAHGQMNEETLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERA 930

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
            + FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +
Sbjct: 931  DTFGLSQLHQLRGRVGRSRERGYAYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMK 990

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 991  DLEIRGAGNVLGAEQSG 1007


>gi|218752691|ref|ZP_03531487.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            GM 1503]
 gi|289761156|ref|ZP_06520534.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            GM 1503]
 gi|289708662|gb|EFD72678.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            GM 1503]
          Length = 1234

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 206/375 (54%), Gaps = 13/375 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 647  FTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 706

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH +   +      + ++ ++     A  R  ++ +A G   I+IGTH L Q  +
Sbjct: 707  TLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGV 766

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LV+VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 767  RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 826

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R P+ T + P +   ++   L+  L    +A+++       + S+  +   R   L
Sbjct: 827  PPEERYPVLTYVGPHDD-KQIAAALRRELLRDGQAFYV-----HNRVSSIDAAAARVREL 880

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + + + HG+M +   E+ +  F N    +L+ TT++E G+D+ +A+ +I+E A+ 
Sbjct: 881  VPE--ARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADT 938

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
            FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL
Sbjct: 939  FGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDL 998

Query: 626  KQRKEGEILGIKQSG 640
            + R  G +LGI+QSG
Sbjct: 999  EIRGAGNVLGIEQSG 1013


>gi|239833942|ref|ZP_04682270.1| transcription-repair coupling factor [Ochrobactrum intermedium LMG
           3301]
 gi|239822005|gb|EEQ93574.1| transcription-repair coupling factor [Ochrobactrum intermedium LMG
           3301]
          Length = 1171

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 141/422 (33%), Positives = 232/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AGQ+  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++  
Sbjct: 589 IAGQLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIESVADDLAAG 644

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++   K      I 
Sbjct: 645 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSKRFHGLPIN 704

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL  +SI++  L L+I+DE+  FGV
Sbjct: 705 VAHASRLVGTKELAAAKKGLE---DGTVDIVVGTHALLGNSIKFKNLGLLIIDEEQHFGV 761

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 762 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 821

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++CP+I +  E      +E F  L  H     +A+ HG+M
Sbjct: 822 VIRETLLRERY---RGGQSFYVCPRISDLGE------IEEF--LKTHVPELKVAVAHGQM 870

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 871 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 930

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 931 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 988

Query: 639 SG 640
           SG
Sbjct: 989 SG 990


>gi|299141509|ref|ZP_07034645.1| transcription-repair coupling factor [Prevotella oris C735]
 gi|298576845|gb|EFI48715.1| transcription-repair coupling factor [Prevotella oris C735]
          Length = 1139

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 133/409 (32%), Positives = 214/409 (52%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q + E G   + +  +  ++  +  +  T  Q  A +D+  DM  +  M R++ 
Sbjct: 542 LIKLYAQRRHEKGYAFSGDSYLQHELEASFLYEDTPDQSKATQDVKADMESQRPMDRLVC 601

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   A     Q  ++ P  +LA QHY+  K   +   + V+ ++   
Sbjct: 602 GDVGFGKTEVAVRAAFKAACDSKQVAVLVPTTVLAYQHYQTFKNRLKGMPVRVDYLSRAR 661

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                ++ L  +  G+  I+IGTH L   S++++ L L+I+DE+ +FGV  + KL +  T
Sbjct: 662 SAKQTKQVLTDLEDGKIDILIGTHKLLGKSVKWHDLGLLIIDEEQKFGVSTKEKLRKMKT 721

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L M+ATPIPRTL  + +G  D+S I   P  R PI T +   +   EVI + +   
Sbjct: 722 NVDTLTMSATPIPRTLQFSLMGARDMSIIRTPPPNRYPIHTELATFSH--EVIADAINFE 779

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + Y++  +I          + E  N +H++     +AI HG+M     E V+  F
Sbjct: 780 MSRNGQVYFVHDRIN--------GLQEIANLIHKYVPDCRVAIGHGQMPPDKLEKVLMGF 831

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L++TT++E GID+ +A+ +II +A  FGL+ LHQ+RGRVGR    + C LL  
Sbjct: 832 MNYDYDVLLSTTIVENGIDISNANTMIINDAHRFGLSDLHQMRGRVGRSNRKAFCYLLAP 891

Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           P   L+  +  RL  L+N  +   GF +A +DL  R  G +LG +QSG 
Sbjct: 892 PKTSLTPEARRRLEALENFSELGSGFDLAMQDLDIRGAGNLLGAEQSGF 940


>gi|260591441|ref|ZP_05856899.1| transcription-repair coupling factor [Prevotella veroralis F0319]
 gi|260536633|gb|EEX19250.1| transcription-repair coupling factor [Prevotella veroralis F0319]
          Length = 1187

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/400 (32%), Positives = 215/400 (53%), Gaps = 15/400 (3%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++E G   + +  +  ++  +  +  T  Q  A +++ QDM     M R++ GDVG GKT
Sbjct: 592 RREKGFAFSPDSFMQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKT 651

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A     Q  ++ P  +LA QHY+  KK  ++  + V+ ++        ++ 
Sbjct: 652 EVAIRAAFKAAVDNKQVAVLVPTTVLAFQHYQTFKKRLKDMPVRVDYLSRARSAKQTKQV 711

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           +E +A G+ +I++GTH L   +++++ L L+I+DE+ +FGV  + KL Q  T    L M+
Sbjct: 712 IEDLAEGKINILVGTHKLIGKTVKWHDLGLLIIDEEQKFGVTTKEKLRQLKTNVDTLTMS 771

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486
           ATPIPRTL  + +G  D+S +   P  R PI+T I   +   EVI + +   +S   + Y
Sbjct: 772 ATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTQIASFSH--EVIADAINFEMSRNGQVY 829

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           ++  ++    E    ++++++          +AI HG+M   + E ++  F N    +L+
Sbjct: 830 FVNNRVGNLPE--IANLIKKYVP-----DCRVAIGHGQMKPEELEKIIMGFMNYDYDVLL 882

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TT++E GID+ +A+ III  A  FGL+ LHQ+RGRVGR  + + C LL  P  + NS  
Sbjct: 883 STTIVENGIDISNANTIIINEAHRFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNSDA 942

Query: 607 R-----LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           R     L    +   GF +A +DL  R  G +LG +QSG 
Sbjct: 943 RHRLLALETFSDLGSGFNLAMQDLDIRGAGNLLGSEQSGF 982


>gi|297569280|ref|YP_003690624.1| transcription-repair coupling factor [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925195|gb|ADH86005.1| transcription-repair coupling factor [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 1179

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 140/411 (34%), Positives = 216/411 (52%), Gaps = 15/411 (3%)

Query: 237 QIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           Q+A  L++   K+++  G   +  G++  ++  + P+  T  Q  AI ++L D+     M
Sbjct: 578 QVAQDLLKLYAKRQLAPGTSFSTPGELYSELEESFPYDETPGQLKAIDEVLADLQADKPM 637

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VA+ A    VE GGQ  I+ P  +LA+QH    ++      + VE 
Sbjct: 638 DRLVCGDVGYGKTEVAVRAAFKVVEDGGQVAILVPTTVLAEQHAATFRERLTGFPLRVES 697

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +      A ++K + ++A G   IIIGTH L    I++  L L+I+DE+HRFGV  + KL
Sbjct: 698 LNRFRTPAEQKKIVAQLAAGNIDIIIGTHRLLSADIKFRNLGLLIIDEEHRFGVSHKEKL 757

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +  +   VL +TATPIPRTL L+ LG  D+S I+  P  R+ +KT +    R D+++ R
Sbjct: 758 KKMRSGVDVLTLTATPIPRTLQLSLLGVRDLSVISSPPNLRRTVKTFVA---RHDDLVIR 814

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             +    G+        I   + S+   V  +   L     + +A+ HG+M     E +M
Sbjct: 815 EAIHREMGRDGQVF---IVHNRVSSIHEVAAKVQKLVPE--ARVAVAHGQMPGKQLEEIM 869

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F      +L+ TT+IE G+D+  A+ III  A+  GLA+++QLRGRVGR    +   L
Sbjct: 870 VRFVRREINVLVCTTIIESGLDIPSANTIIITRADRLGLAEIYQLRGRVGRSSRQAYAYL 929

Query: 595 LYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           L      L+  +  RL  L +  +   GF +A  DL+ R  G ILG  QSG
Sbjct: 930 LVPALDDLAGEARRRLQALMDYNELGGGFKLALSDLQIRGGGNILGESQSG 980


>gi|259416898|ref|ZP_05740818.1| transcription-repair coupling factor [Silicibacter sp. TrichCH4B]
 gi|259348337|gb|EEW60114.1| transcription-repair coupling factor [Silicibacter sp. TrichCH4B]
          Length = 1151

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 136/396 (34%), Positives = 221/396 (55%), Gaps = 17/396 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI+D++ D++    M R++ GDVG GKT VA+ A   A  +G Q  I+AP
Sbjct: 593 PYQETDDQLRAIEDVMSDLNSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVAP 652

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH    K+  +   + V  ++  +P     +  E +A G   I++GTHAL   +
Sbjct: 653 TTLLARQHAAGFKERFRGFPLEVRQLSRFVPAKEAGQTREGLAKGTVDIVVGTHALLAKN 712

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 713 IRFQNLGLLIIDEEQHFGVAHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 772

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R  I+T +   + I  + E L      G +++++ P+I +  E      +E F  
Sbjct: 773 TPPVDRLAIRTYVTEFDAI-TIREALLREHYRGGQSFYVVPRISDLPE------IEAF-- 823

Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L +     S  + +G+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++  A
Sbjct: 824 LQDQLPELSYVVANGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRA 883

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLAQL+Q+RGRVGR +  +   L   P   L+ ++  RL VL + +    GF +A +
Sbjct: 884 DMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRQKLTDSAEKRLRVLGSLDTLGAGFTLASQ 943

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 944 DLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 977


>gi|148554437|ref|YP_001262019.1| transcription-repair coupling factor [Sphingomonas wittichii RW1]
 gi|148499627|gb|ABQ67881.1| transcription-repair coupling factor [Sphingomonas wittichii RW1]
          Length = 1195

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 142/405 (35%), Positives = 223/405 (55%), Gaps = 26/405 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q+ AI D+++D++    M R++ GDVG GKT VAL A   A   G Q  ++ P
Sbjct: 648  PYQETEDQDRAIADVIEDLAAGKPMDRLVCGDVGFGKTEVALRAAFVAALGGMQVALICP 707

Query: 330  IGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              +LA+QHY  F++++     + +  ++  +     ++  + +A G   I+IGTHAL   
Sbjct: 708  TTLLARQHYRNFVERF-HGMPVNIGHLSRLVSAGEAKRTKDGLADGSIDIVIGTHALLAK 766

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             I + +L LVIVDE+ RFGV  + +L    T  H+L +TATPIPRTL +   G  ++S I
Sbjct: 767  GIAFKRLGLVIVDEEQRFGVTHKERLKALKTDVHMLTLTATPIPRTLQMAMSGLRELSVI 826

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEE--KKESNFRSV 503
               P  R  ++T + P    D V+ R + +L E   G +++ + P+I++    E   R  
Sbjct: 827  QTPPVDRLAVRTYVAP---WDGVVIR-EALLREHYRGGQSFLVTPRIKDLPDIEDYLRKE 882

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            V            S  + HG+M+  + E  M +F +    +L++TT+IE G+D+  A+ +
Sbjct: 883  VPEV---------SYVVAHGQMAAGEVEERMSAFYDKKFDILVSTTIIESGLDIPSANTL 933

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-PLSKNSYTRLSVLKNTED---GFL 619
            I+  A+ FGLAQL+QLRGRVGR +  +   L      L++ +  RL +L+N +    GF 
Sbjct: 934  IVNRADRFGLAQLYQLRGRVGRSKTRAYAYLTTGDRGLTETAEKRLHILQNIDTLGAGFQ 993

Query: 620  IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            IA  DL  R  G +LG +QSG  K +    EL+ S+LE A  DAK
Sbjct: 994  IASHDLDIRGAGNLLGDEQSGHIKEV--GFELYQSMLEEAILDAK 1036


>gi|226323668|ref|ZP_03799186.1| hypothetical protein COPCOM_01443 [Coprococcus comes ATCC 27758]
 gi|225207852|gb|EEG90206.1| hypothetical protein COPCOM_01443 [Coprococcus comes ATCC 27758]
          Length = 813

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 209/373 (56%), Gaps = 19/373 (5%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q+ AI+   +DM     M R++ GDVG GKT +A+ A   AV+   Q V + P  ILAQ
Sbjct: 267 DQQLAIEATKRDMESPKIMDRLICGDVGFGKTEIAIRAAFKAVQENKQVVYLVPTTILAQ 326

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY    +  +   + V+++      A ++K +E +  GQ  IIIGTH +    + +  L
Sbjct: 327 QHYNTFVQRMKEFPVRVDLLCRFRTPAQQKKTIEDLKKGQVDIIIGTHRVLSKDVAFKDL 386

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L+I+DE+ RFGVQ + K+ +      VL +TATPIPRTL ++ +G  D+S + E P  R
Sbjct: 387 GLLIIDEEQRFGVQHKEKIKKLKENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPVDR 446

Query: 456 KPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKE--SNFRSVVERFNSLHE 512
            PI+T ++  N  DE++ E ++  +S   + Y++  ++++  E  +  + +V   N    
Sbjct: 447 MPIQTYVMEEN--DEMVREAIEREISRQGQVYYVYNRVQDIAEMAAKIQKLVPDAN---- 500

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                +A  HG+M +   E +M  F NG   +L++TT+IE G+D+ +A+ +II +A+  G
Sbjct: 501 -----VAYAHGQMREHKLEDIMYDFINGEIDVLVSTTIIETGLDISNANTMIIHDADRMG 555

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
           L+QL+QLRGRVGR   ++   LLY     L + +  RLS ++   D   G  IA  DL+ 
Sbjct: 556 LSQLYQLRGRVGRSNRMAYAFLLYRRDKMLREVAEKRLSAIREFTDLGSGVKIAMRDLEI 615

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +Q G
Sbjct: 616 RGAGNLLGEEQHG 628


>gi|301163896|emb|CBW23451.1| putative transcription-repair coupling factor [Bacteroides fragilis
           638R]
          Length = 1125

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 138/410 (33%), Positives = 219/410 (53%), Gaps = 19/410 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+ QDM +   M R++ 
Sbjct: 526 LIKLYSQRREEKGFAYSPDSFLQRELEASFIYEDTPDQSKATADVKQDMERDMPMDRLVC 585

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  +   +     VE ++   
Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRDRLKGLPCRVEYLSRAR 645

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  ++ +  G  +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 646 TAAQAKAVIKGLEAGDVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQMKV 705

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   +  +EVI + +   
Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFS--EEVIADAINFE 763

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + + +  +I    E   ++++ R      H     IAI HG+M   + E ++  F
Sbjct: 764 MSRNGQVFLVNNRIANLPE--LKAMILR------HIPDCRIAIGHGQMEPAELEQIIFGF 815

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +LIATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 816 VNYDYDVLIATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 874

Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PPLS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 875 PPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 924


>gi|60682433|ref|YP_212577.1| putative transcription-repair coupling factor [Bacteroides fragilis
           NCTC 9343]
 gi|265766134|ref|ZP_06094175.1| transcription-repair coupling factor [Bacteroides sp. 2_1_16]
 gi|60493867|emb|CAH08658.1| putative transcription-repair coupling factor [Bacteroides fragilis
           NCTC 9343]
 gi|263253802|gb|EEZ25267.1| transcription-repair coupling factor [Bacteroides sp. 2_1_16]
          Length = 1125

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 138/410 (33%), Positives = 219/410 (53%), Gaps = 19/410 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+ QDM +   M R++ 
Sbjct: 526 LIKLYSQRREEKGFAYSPDSFLQRELEASFIYEDTPDQSKATADVKQDMERDMPMDRLVC 585

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  +   +     VE ++   
Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRDRLKGLPCRVEYLSRAR 645

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  ++ +  G  +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 646 TAAQAKAVIKGLEAGDVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQMKV 705

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   +  +EVI + +   
Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFS--EEVIADAINFE 763

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + + +  +I    E   ++++ R      H     IAI HG+M   + E ++  F
Sbjct: 764 MSRNGQVFLVNNRIANLPE--LKAMILR------HIPDCRIAIGHGQMEPAELEQIIFGF 815

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +LIATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 816 VNYDYDVLIATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 874

Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PPLS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 875 PPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 924


>gi|301059200|ref|ZP_07200138.1| transcription-repair coupling factor [delta proteobacterium NaphS2]
 gi|300446690|gb|EFK10517.1| transcription-repair coupling factor [delta proteobacterium NaphS2]
          Length = 1180

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 131/374 (35%), Positives = 204/374 (54%), Gaps = 17/374 (4%)

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q  AI D+L+D+S    M R++ GDVG GKT +A+ A   AV  G Q   + P  +L
Sbjct: 640  TDDQSKAIDDVLEDLSSDKSMDRLICGDVGFGKTEIAIRAAFKAVTDGKQVAFLVPTTVL 699

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            A+QHYE  +K      + V I++    +A + K +  +  G+ +I+IGTH + Q  + + 
Sbjct: 700  AEQHYETFRKRMTPHSVTVGILSRFKTKAEQGKIIAEVRSGKINILIGTHRILQKDVSFA 759

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L LVI+DE+ RFGV+Q+  L +      VL +TATP+PRTL ++ +G  D+S I   P 
Sbjct: 760  DLGLVIIDEEQRFGVKQKEALKKYRALVDVLAITATPVPRTLQMSMMGVRDLSVIETPPR 819

Query: 454  GRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             R  I+T + P +  +  I+R ++  L  G + +++  ++        +S+V   ++L +
Sbjct: 820  DRLAIETYLSPYD--EATIKRAIQNELERGGQTFFVHNRV--------KSIVHTADALRK 869

Query: 513  HFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +   + HG+M   + E+ M  F      +L+ TT+IE G+D+  A+ III  A+  
Sbjct: 870  LVPEARFEVAHGQMKPKELENTMMRFLKREIDVLVCTTIIESGLDIPSANTIIINEADRL 929

Query: 572  GLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVL---KNTEDGFLIAEEDLK 626
            GLAQ++QLRGRVGR  E +   LL      L++++  RL  L    N   G  +A  DLK
Sbjct: 930  GLAQIYQLRGRVGRASEKAYAYLLVTRDAMLTRDAEKRLKALMDFSNLGAGLHLAMHDLK 989

Query: 627  QRKEGEILGIKQSG 640
             R  G ILG  QSG
Sbjct: 990  IRGGGNILGFSQSG 1003


>gi|33240450|ref|NP_875392.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33237978|gb|AAQ00045.1| Transcription-repair coupling factor [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 1170

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 144/452 (31%), Positives = 243/452 (53%), Gaps = 28/452 (6%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           WT  A+ER A   +    I L+ +  +     G     +G   +++    P+  T  Q  
Sbjct: 559 WTK-AKER-AKKSISRVAIDLIKLYAERSNSQGFSFPKDGPWQRELEEAFPYEATPDQIK 616

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A+ +I  DM +   M R++ GDVG GKT VA+ A+  A+ AG Q  I+AP  +LAQQH+ 
Sbjct: 617 AVSEIKSDMEKSFPMDRLVCGDVGFGKTEVAIRALFKAITAGKQVAILAPTTVLAQQHWR 676

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            +        I V ++      + +++  + + +G    I+GTH L   +I+Y  L L++
Sbjct: 677 TLTDRFAPYPIKVSLLNRFKSSSEKKEIAKSLKNGTIDAIVGTHLLLSKNIEYKDLGLLV 736

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ RFGV Q+ K+        VL +TATPIPRTL ++  G  ++S IT  P  R+ IK
Sbjct: 737 VDEEQRFGVNQKEKIKSLKKNIDVLTLTATPIPRTLYMSLSGVREMSLITTPPPQRRAIK 796

Query: 460 TVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T +  +++ +E+I R  +   +  G + +++ P+IE  E+  +  + +V           
Sbjct: 797 THL--VSKENEII-RSAICQEIGRGGQIFYVVPRIEGIEEVATEIKQMVPNI-------- 845

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + I HG+M++ + E+ M +F  G   L++ TT+IE G+D+   + I+IE+A  FGL+Q
Sbjct: 846 -KLIIAHGQMNEGELENAMIAFNAGEADLMLCTTIIESGLDIPRVNTILIEDAHKFGLSQ 904

Query: 576 LHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           L+QLRGRVGR   + +   L+ P    ++ N+  RL  ++   +   G+ +A  D++ R 
Sbjct: 905 LYQLRGRVGRS-GVQAHAWLFFPQDKEVTNNASQRLKAIQEFSELGSGYQLAMRDMEIRG 963

Query: 630 EGEILGIKQSGMPK---FLIAQPELHDSLLEI 658
            G ++GI+QSG  +   F +    LH+S+ EI
Sbjct: 964 VGNLIGIQQSGQMEIIGFDLYMEILHESIAEI 995


>gi|53714414|ref|YP_100406.1| transcription-repair coupling factor [Bacteroides fragilis YCH46]
 gi|52217279|dbj|BAD49872.1| transcription-repair coupling factor [Bacteroides fragilis YCH46]
          Length = 1125

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 138/410 (33%), Positives = 219/410 (53%), Gaps = 19/410 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+ QDM +   M R++ 
Sbjct: 526 LIKLYSQRREEKGFAYSPDSFLQRELEASFIYEDTPDQSKATADVKQDMERDMPMDRLVC 585

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  +   +     VE ++   
Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRDRLKGLPCRVEYLSRAR 645

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  ++ +  G  +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 646 TAAQAKAVIKGLEAGDVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQMKV 705

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   +  +EVI + +   
Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFS--EEVIADAINFE 763

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + + +  +I    E   ++++ R      H     IAI HG+M   + E ++  F
Sbjct: 764 MSRNGQVFLVNNRIANLPE--LKAMILR------HIPDCRIAIGHGQMEPAELEQIIFGF 815

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +LIATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 816 VNYDYDVLIATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 874

Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PPLS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 875 PPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 924


>gi|254774025|ref|ZP_05215541.1| hypothetical protein MaviaA2_05024 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 1201

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 205/377 (54%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           ++ T  Q +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 626 YTETVDQLTAITEVKSDMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 685

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH +          + V+ ++     A  R  +E +A G   I+IGTH L Q  +
Sbjct: 686 TLLADQHLQTFTDRMAGFPVTVKGLSRFTDAAESRAVIEGLADGSVDIVIGTHRLLQTGV 745

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 746 RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 805

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
            P  R P+ T + P +   +V   L+  L    +A+++  ++   ++  +  R +V    
Sbjct: 806 PPEERYPVLTYVGPHDD-KQVAAALRRELLRDGQAFYVHNRVSSIDRAAARVRELVPE-- 862

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                  + + + HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A
Sbjct: 863 -------ARVVVAHGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERA 915

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGL+QLHQLRGRVGR  E      LY  H PL++ +Y RL+ +    +   G  +A +
Sbjct: 916 DTFGLSQLHQLRGRVGRSRERGYAYFLYPPHAPLTETAYDRLATIAQNNELGAGMAVALK 975

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G +LG++QSG
Sbjct: 976 DLEIRGAGNVLGVEQSG 992


>gi|333029973|ref|ZP_08458034.1| transcription-repair coupling factor [Bacteroides coprosuis DSM
           18011]
 gi|332740570|gb|EGJ71052.1| transcription-repair coupling factor [Bacteroides coprosuis DSM
           18011]
          Length = 1123

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 129/402 (32%), Positives = 219/402 (54%), Gaps = 19/402 (4%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++E G   + +  + +++  +  +  T  Q  + +D+ QDM     M R++ GDVG GKT
Sbjct: 535 REEKGFAFSPDSFLQKELEASFIYEDTPDQSKSTQDVKQDMESNMPMDRLVCGDVGFGKT 594

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            +A+ A   AV    Q  ++ P  +LA QH++  K+  +     VE +T      H ++ 
Sbjct: 595 EIAIRAAFKAVTDNKQVAVLVPTTVLAYQHFQTFKERLKEFPCTVEYLTRARTTNHTKQV 654

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L+ ++ G+  I+IGTH +   ++++  L L+I+DE+ +FGV  + KL Q       L +T
Sbjct: 655 LKSLSEGKVDILIGTHKILGKNVKFKDLGLLIIDEEQKFGVSVKEKLRQMKVNVDTLTLT 714

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486
           ATPIPRTL  + +G  D+S I+  P  R PI+T +   N  +E+I + +   +S   + +
Sbjct: 715 ATPIPRTLQFSLMGARDLSIISTPPPNRYPIQTEVHTFN--EEIITDAINFEMSRNGQVF 772

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++  +I         ++++    + ++     + I HG+M   + E  + +F N    +L
Sbjct: 773 FVNNRIA--------NLIDLKLMIQKNIPDCRVCIGHGQMDPKEMEETILAFANYDYDVL 824

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK--- 602
           ++TT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  PPLS    
Sbjct: 825 LSTTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-APPLSSLTD 883

Query: 603 NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
            +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 884 EARRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 925


>gi|241765264|ref|ZP_04763245.1| transcription-repair coupling factor [Acidovorax delafieldii 2AN]
 gi|241365055|gb|EER59947.1| transcription-repair coupling factor [Acidovorax delafieldii 2AN]
          Length = 1172

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 148/412 (35%), Positives = 216/412 (52%), Gaps = 21/412 (5%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   AV  G Q   +AP 
Sbjct: 620  FEETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQVAFLAPT 679

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QHY+ +        + V  ++          A++ I  G   I++GTH L  +S 
Sbjct: 680  TLLAEQHYQTLVDRFSKWPVKVAEVSRFRSGKEITAAIKGIGDGTVDIVVGTHKLLSEST 739

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +++ L L+I+DE+HRFGV+ + ++        VL +TATPIPRTL +   G  D+S I  
Sbjct: 740  KFHNLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSVIAT 799

Query: 451  KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R  IKT +   N    VI E +   L  G + Y++  ++E        ++  R   
Sbjct: 800  APQRRLAIKTFV--RNEGTGVIREAVLRELKRGGQVYFLHNEVE--------TIENRRQK 849

Query: 510  LHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L E    + IA+ HG+M + + E VM  F      +L+ +T+IE GIDV  A+ II+  A
Sbjct: 850  LEEILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPTANTIIMSRA 909

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
            + FGLAQLHQLRGRVGR    +   L+      L+K +  RL  ++  E+   GF +A  
Sbjct: 910  DKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKQAQQRLEAIQQMEELGSGFYLAMH 969

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            DL+ R  GE+LG  QSG    L    +L++ +L  A K  K    ++PDL S
Sbjct: 970  DLEIRGAGEVLGENQSG--NMLEVGFQLYNEMLNEAVKALK--AGKEPDLLS 1017


>gi|304315715|ref|YP_003850860.1| transcription-repair coupling factor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777217|gb|ADL67776.1| transcription-repair coupling factor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 1166

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 138/432 (31%), Positives = 233/432 (53%), Gaps = 25/432 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW+   ++     E LA  +  L  ++Q  K  G   + +    +      P+  T+ Q 
Sbjct: 572 EWSKLKKKAKKAVEDLAKDLIKLYAKRQTMK--GYAFSKDTPWQKDFEERFPYEETEDQL 629

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             I++I +DM     M R+L GDVG GKT VAL A   AV  G Q   + P  ILA+QHY
Sbjct: 630 RCIEEIKRDMESDKPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVAFLCPTTILAEQHY 689

Query: 339 E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
             F++++ ++  + +E+++       + + ++ +A G   I++GTH + Q+ +++  L L
Sbjct: 690 NNFVQRF-KDFPVKIEMLSRFRSYKEQSQIIKSLAEGTIDILVGTHKILQNDVKFKDLGL 748

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV+ + K+ +      VL ++ATPIPRTL ++ +G  D+S I   P  R P
Sbjct: 749 LIIDEEQRFGVKHKEKIKKLKENIDVLSLSATPIPRTLHMSLIGIRDMSVIENPPEDRYP 808

Query: 458 IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           ++T ++  N   I + I R    L  G + Y++  +I         + +ER  S+ +   
Sbjct: 809 VQTYVVEFNEELIRDAILR---ELGRGGQVYFVYNRI---------NGIERMASIIKELV 856

Query: 516 SS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
            S  +A+ HG+M +   E++M  F NG   +L+ TT+IE G+D+ + + II+ +++  GL
Sbjct: 857 PSARVAVAHGQMDEGKLENIMIGFLNGDYDILVCTTIIETGLDIPNVNTIIVYDSDKMGL 916

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQR 628
           +QL+QLRGRVGR   ++     Y     +++ +  RL  +K  TE   GF IA  DL+ R
Sbjct: 917 SQLYQLRGRVGRSNRLAYAYFTYRKDKVITEVAEKRLEAIKEFTEFGSGFKIAMRDLEIR 976

Query: 629 KEGEILGIKQSG 640
             G +LG +Q G
Sbjct: 977 GAGNLLGAEQHG 988


>gi|144897813|emb|CAM74677.1| Transcription-repair coupling factor (superfamily II helicase)
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1098

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 137/415 (33%), Positives = 220/415 (53%), Gaps = 21/415 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A Q+  +  ++Q +K   +    EG +  +     P++ T+ Q  AI D + D+     
Sbjct: 515 MADQLIAIAAQRQLRKSESL-TPPEG-LWDEFCARFPYAETEDQARAIDDTVADLGSGRP 572

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   A  +G Q  ++ P  +LA+QHY           + VE
Sbjct: 573 MDRLVCGDVGFGKTEVAMRAAFVAAMSGMQVAVVVPTTLLARQHYRNFSDRFHGLPLKVE 632

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            ++  +      +    +A G   I++GTHA+   SI + +L L+I+DE+  FGV  + +
Sbjct: 633 QLSRLVTAKRANEVKAGLADGSVDIVVGTHAVLAKSINFKRLGLLIIDEEQHFGVGHKER 692

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L Q  +  HVL +TATPIPRTL L   G  ++S I   P  R  ++T ++P    D V+ 
Sbjct: 693 LKQLKSDVHVLTLTATPIPRTLQLALTGVKEMSVIATPPVDRLVVRTFVLP---FDPVVL 749

Query: 474 RLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           R + +L E   G + +++CP++     ++   V +R   L      +IA  HGR++  + 
Sbjct: 750 R-EAILRERYRGGQVFYVCPRL-----ADIDRVADRLAKLVPEVKCAIA--HGRLTPTEL 801

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE-- 588
           E VM +F +    +L++T +IE G+D+   + +II  A+ FGL QL+QLRGRVGRG+   
Sbjct: 802 EEVMTAFGDKQYDVLLSTNIIESGLDMPSVNTLIIHRADMFGLGQLYQLRGRVGRGKTRG 861

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            +   L     LSK +  RL V++  +    GF +A  DL  R  G +LG +QSG
Sbjct: 862 YAYFTLPTDKVLSKPAEKRLHVMQTLDSLGAGFQLASHDLDIRGAGNLLGEEQSG 916


>gi|308233919|ref|ZP_07664656.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829]
 gi|328943400|ref|ZP_08240865.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829]
 gi|327491369|gb|EGF23143.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829]
          Length = 1198

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 133/429 (31%), Positives = 229/429 (53%), Gaps = 19/429 (4%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +W+ +  R R +  ++    + L   R   K   G   + +    + +  + P++ T+ Q
Sbjct: 571 DWSRACTRARKSAQKMAFDLVDLYTRRSTIK---GFSFSFDTPAQEDMETSFPYTLTRDQ 627

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             A+ DI  DM     M R+L GDVG GKT VAL A     +   Q +++ P  ILAQQH
Sbjct: 628 ARALDDIKADMQSATPMDRLLCGDVGFGKTEVALRAAFKCCQDHKQVMVLCPTTILAQQH 687

Query: 338 YE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           +E F +++T   ++ V +++  +  A +++ LE  + G   ++IGTH L    +    L 
Sbjct: 688 FETFYERFTP-FEVNVRVLSRFIKPAEQKRTLEGFSTGDVDVLIGTHRLLSSDVNPSNLG 746

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+I+DE+ RFGVQ + +L        VL ++ATPIPRT+ +   G  D+S I   PAGRK
Sbjct: 747 LIIIDEEQRFGVQHKEQLKNIREQVDVLTLSATPIPRTMQMAMSGVRDMSLILSAPAGRK 806

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           P++  +   +  D + + +++ L+   + Y++  +++          +ER ++      +
Sbjct: 807 PVRVHVGEWDS-DLISDAIRLELARKGQVYYVSNRVK-----TIDDALERVHACAPE--A 858

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            + + HG+MS    E VM  F+     +L+ATT+IE GID    + +IIE+++  GLAQL
Sbjct: 859 RVGVAHGQMSPSQIEEVMLLFEEHEIDVLVATTIIESGIDNPHTNTLIIEDSQRLGLAQL 918

Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QL+GRVGRG   +    ++ P  PL++ +  RL  +   ++   G  IA +DL+ R  G
Sbjct: 919 YQLKGRVGRGRVQAYAYFMFPPTEPLTEEARRRLEAIYEHQELGSGMRIAMKDLEIRGAG 978

Query: 632 EILGIKQSG 640
            ++G +Q G
Sbjct: 979 SLMGAEQHG 987


>gi|167751280|ref|ZP_02423407.1| hypothetical protein EUBSIR_02266 [Eubacterium siraeum DSM 15702]
 gi|167655787|gb|EDR99916.1| hypothetical protein EUBSIR_02266 [Eubacterium siraeum DSM 15702]
          Length = 1175

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 201/377 (53%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q   I++I  DM +   M R+L GDVG GKT VAL A    +  G Q  I+ P 
Sbjct: 615 YVETDDQLRCIEEIKHDMMRTAPMERLLCGDVGFGKTEVALRAAFKCIGDGKQCAILVPT 674

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QHY+ + K  +   I VE+++       ++  L+++  G+  +++GTH L QD +
Sbjct: 675 TVLAWQHYQTVLKRMEGFDIRVELLSRFRTAKEQKIILKKLEEGELDLVVGTHRLVQDDV 734

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LVI+DE+ RFGV  + KL +  T   VL ++ATPIPRTL +   G  D+S I  
Sbjct: 735 KFKDLGLVIIDEEQRFGVNDKEKLKEAFTNVDVLTLSATPIPRTLNMAMSGIRDMSVIET 794

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFN 508
            P  R PI T ++  +R   + + +   L    + Y++  +IE      ++  S+V   N
Sbjct: 795 PPGDRHPITTYVVEHDR-GVIAQAINKELRRNGQVYYVHNRIESIYSCAADIHSMVPEAN 853

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                    I I HGRMS+ +  +V      G   +L+ TT+IE G+DV + + +IIENA
Sbjct: 854 ---------IGIAHGRMSEEELLNVWRRLIEGEIDVLVCTTLIETGVDVPNCNTLIIENA 904

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEE 623
           +  GLAQLHQLRGRVGR    +     +     LS+ +  RL  ++       GF IA +
Sbjct: 905 DCMGLAQLHQLRGRVGRTNRRAYAYFTFRRGKVLSEIATKRLDAIREFTRFGSGFRIAMK 964

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G +LG  QSG
Sbjct: 965 DLEIRGAGSVLGQSQSG 981


>gi|325928058|ref|ZP_08189271.1| transcription-repair coupling factor Mfd [Xanthomonas perforans
           91-118]
 gi|325541556|gb|EGD13085.1| transcription-repair coupling factor Mfd [Xanthomonas perforans
           91-118]
          Length = 1110

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 206/381 (54%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ A  AA  A  Q  ++
Sbjct: 560 GFPFEETGDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASADKQVAVL 619

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QHY   +    +  + VE+++        +  LE++A G+  +IIGTH L Q
Sbjct: 620 VPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGEIDVIIGTHRLLQ 679

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S 
Sbjct: 680 PDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSI 739

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R  ++T I   +   + E  +R    LS G + Y++   +E        S+V 
Sbjct: 740 IATPPPNRLAVQTFITAWDNTLLREAFQR---ELSRGGQLYFLHNDVE--------SIVR 788

Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               L E    + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ II
Sbjct: 789 MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 848

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
           I  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF 
Sbjct: 849 INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 908

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 909 LATHDLEIRGAGELLGEDQSG 929


>gi|322417709|ref|YP_004196932.1| transcription-repair coupling factor [Geobacter sp. M18]
 gi|320124096|gb|ADW11656.1| transcription-repair coupling factor [Geobacter sp. M18]
          Length = 1157

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 206/378 (54%), Gaps = 19/378 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q +AI  ++ DM  +  M R++ GDVG GKT VA+ A   +   G Q  I+ P 
Sbjct: 618 FEETPDQATAIDQVISDMESQRPMDRLVCGDVGYGKTEVAMRAAFKSTLDGKQVAILVPT 677

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LAQQH E      ++  + VE+++       +++ LE +  G+  I+IGTH L Q  +
Sbjct: 678 TVLAQQHAESFAARLKDYPVRVEMLSRFRTPQQQKQILEGVKKGEVDIVIGTHRLLQKDV 737

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+IVDE+ RFGV  + +L Q      +L +TATPIPRTL ++ +G  D+S I  
Sbjct: 738 VFKDLGLLIVDEEQRFGVAHKERLKQFRAVVDILTLTATPIPRTLYMSLMGIRDLSIIDT 797

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERF 507
            P  R  IKT +      DE+I E +   L  G + +++  +++         R +V   
Sbjct: 798 PPVDRLAIKTFV--SRSSDELIREAVLRELRRGGQIFFVHNRVQTIGAMADELRRIVPE- 854

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IA+ HG+M + + E VM SF +G   LL+ TT+IE G+D+  A+ +I+  
Sbjct: 855 --------AKIAVGHGQMPEKELEQVMLSFMHGETNLLLCTTIIESGLDIPTANTLIVNR 906

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
           A+ FGL+QL+QLRGRVGR +  +   LL      +S  +  RL +L+   +   GF IA 
Sbjct: 907 ADTFGLSQLYQLRGRVGRSKTRAYAYLLIPGEGSISPEARERLKILQELTELGAGFRIAT 966

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G++LG +QSG
Sbjct: 967 HDLEIRGAGDLLGARQSG 984


>gi|39935729|ref|NP_948005.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            CGA009]
 gi|39649582|emb|CAE28104.1| transcription repair coupling factor [Rhodopseudomonas palustris
            CGA009]
          Length = 1172

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 146/445 (32%), Positives = 237/445 (53%), Gaps = 22/445 (4%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +AG++  +   +  ++   +PI  + ++  +     P+  T+ Q +AI   L D+ +   
Sbjct: 586  IAGELIKVAAERHLREAPKLPI--QPQLYDEFCARFPYDETEDQLAAINAALGDLEKGTP 643

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA+QH +   +  +   + V 
Sbjct: 644  MDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTFTERFRGFPVNVG 703

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
              +  +      +  + IA G   I++GTHAL   SI++  L LVIVDE+  FGV  + K
Sbjct: 704  QASRLVSAKELSQVKKGIADGTTDIVVGTHALLGKSIKFKDLGLVIVDEEQHFGVTHKEK 763

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEV 471
            L Q  +  HVL ++ATPIPRTL L   G  D+S I   P  R  ++T + P +   I E 
Sbjct: 764  LKQLRSEVHVLTLSATPIPRTLQLAMTGVRDLSIIASPPVDRLAVRTFVAPHDPLMIREA 823

Query: 472  IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
            + R +     G +A+++ P+I++  E      V+ F  L +H     +A+ HG+M     
Sbjct: 824  LLRERY---RGGQAFYVVPRIDDLAE------VKDF--LDKHVPEMKVAVAHGQMPPAVI 872

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE-EI 589
            E +M +F +G   +L++TT++E G+D+ +A+ +I+  A+ FGLAQL+QLRGRVGR +   
Sbjct: 873  EDIMSAFYDGKFDILLSTTIVESGLDIPNANTLIVHRADMFGLAQLYQLRGRVGRSKLRA 932

Query: 590  SSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
             +   L    ++  +  RL VL++ E    GF +A  DL  R  G +LG +QSG  K + 
Sbjct: 933  YALFTLPQHNITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEV- 991

Query: 647  AQPELHDSLLEIARKDAKHILTQDP 671
               EL+  +LE A  + K  +  +P
Sbjct: 992  -GFELYQQMLEEAITNLKAGIVDEP 1015


>gi|307564503|ref|ZP_07627044.1| transcription-repair coupling factor [Prevotella amnii CRIS 21A-A]
 gi|307346863|gb|EFN92159.1| transcription-repair coupling factor [Prevotella amnii CRIS 21A-A]
          Length = 1178

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 131/400 (32%), Positives = 216/400 (54%), Gaps = 15/400 (3%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           + E G   + +  +  ++  +  +  T  Q  A +D+ QDM     M R++ GDVG GKT
Sbjct: 585 RHEKGFAFSPDSFMQHELEASFLYEDTPDQLKATQDLKQDMESSQPMDRLICGDVGFGKT 644

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A     Q  ++ P  +LA QHY+  +   ++  + ++ ++        ++ 
Sbjct: 645 EVAIRAAFKAAADNKQVAVLVPTTVLALQHYKSFQNRLKDMPVTIDYLSRARTTKQTKQI 704

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  +A G+  I+IGTH L   +++++ L L+I+DE+ +FGV  + KL Q  T    L MT
Sbjct: 705 LSNLATGKIDILIGTHKLLGKTVKWHDLGLLIIDEEQKFGVSTKEKLRQIKTNVDTLTMT 764

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL  + +G  D+S +   P  R PI+T II  +  + + E +   +S   + ++
Sbjct: 765 ATPIPRTLQFSLMGARDMSIMKTPPPNRYPIQTEIIEFDP-ETIAEAINFEMSRNGQVFF 823

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +  +I   K  +  +++ R     +     IAI HG+M   + E ++  F N    LL++
Sbjct: 824 VNDRI--GKLQDLAAMIRR-----KVPDCRIAIGHGQMKPEELEEIIIGFMNYDYDLLLS 876

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNS 604
           TT++E GID+ +A+ III +A HFGL+ LHQ+RGRVGR  + + C L+  PP   L+  +
Sbjct: 877 TTIVENGIDISNANTIIINDAHHFGLSDLHQMRGRVGRSNKKAFCYLIT-PPMALLNTEA 935

Query: 605 YTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             R+  L+   D   GF +A +DL  R  G +LG +QSG 
Sbjct: 936 RRRIEALETFSDLGSGFNLAMQDLDIRGAGNLLGAEQSGF 975


>gi|291556783|emb|CBL33900.1| transcription-repair coupling factor [Eubacterium siraeum V10Sc8a]
          Length = 1175

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 135/380 (35%), Positives = 204/380 (53%), Gaps = 23/380 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q   I++I  DM +   M R+L GDVG GKT VAL A    +  G Q  I+ P 
Sbjct: 615 YVETDDQLRCIEEIKHDMMRTAPMERLLCGDVGFGKTEVALRAAFKCIGDGKQCAILVPT 674

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QHY+ + K  +   I VE+++       ++  L+++  G+  +++GTH L QD +
Sbjct: 675 TVLAWQHYQTVLKRMEGFDIRVELLSRFRTAKEQKIILKKLEEGELDLVVGTHRLVQDDV 734

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LVI+DE+ RFGV  + KL +  T   VL ++ATPIPRTL +   G  D+S I  
Sbjct: 735 KFKDLGLVIIDEEQRFGVNDKEKLKEAFTNVDVLTLSATPIPRTLNMAMSGIRDMSVIET 794

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFN 508
            P  R PI T ++  +R   + + +   L    + Y++  +IE      ++  S+V   N
Sbjct: 795 PPGDRHPITTYVVEHDR-GVIAQAINKELRRNGQVYYVHNRIESIYSCAADIHSMVPEAN 853

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFK---NGTCKLLIATTVIEVGIDVVDASIIII 565
                    I I HGRMS+   E ++D ++    G   +L+ TT+IE G+DV + + +II
Sbjct: 854 ---------IGIAHGRMSE---EELLDVWRRLIEGEIDVLVCTTLIETGVDVPNCNTLII 901

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLI 620
           ENA+  GLAQLHQLRGRVGR    +     +     LS+ +  RL  ++       GF I
Sbjct: 902 ENADCMGLAQLHQLRGRVGRTNRRAYAYFTFRRGKVLSEIATKRLDAIREFTRFGSGFRI 961

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A +DL+ R  G +LG  QSG
Sbjct: 962 AMKDLEIRGAGSVLGQSQSG 981


>gi|254522423|ref|ZP_05134478.1| transcription-repair coupling factor [Stenotrophomonas sp. SKA14]
 gi|219720014|gb|EED38539.1| transcription-repair coupling factor [Stenotrophomonas sp. SKA14]
          Length = 1154

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 154/476 (32%), Positives = 246/476 (51%), Gaps = 28/476 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W+   R+       +A ++  +  R+Q +   G+ + V+  + +      PF  T  Q 
Sbjct: 557  QWSKAKRKAAEKVRDVAAELLEIQARRQARA--GLALQVDRAMYEPFAAGFPFEETPDQL 614

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI   L+D++    M R++ GDVG GKT VA+ A  AA  AG Q  ++ P  +LA+QH+
Sbjct: 615  AAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHF 674

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +    +  + VE+++        +  LE++A G   +I+GTH L Q  +++  L +V
Sbjct: 675  RNFRDRFADYPMKVEVLSRFKTSKEIKAELEKVAAGTIDVIVGTHRLLQPDVKFKDLGMV 734

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S I   P  R  +
Sbjct: 735  IVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPPNRLAV 794

Query: 459  KTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            +T    I + D  +  E  +  L+ G + Y++   +E        S+      L E    
Sbjct: 795  QTF---ITQWDNALLREAFQRELARGGQLYFLHNDVE--------SIGRMQRELSELVPE 843

Query: 517  S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + I I HG+M + + E VM  F+     +L++TT+IE GID+ +A+ III  A+ FGLAQ
Sbjct: 844  ARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQ 903

Query: 576  LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
            LHQLRGRVGR    +   L+      ++ ++  RL  + + ++   GF +A  DL+ R  
Sbjct: 904  LHQLRGRVGRSHHRAYAYLVAPDRRSITPDAEKRLEAIASMDELGAGFTLATHDLEIRGA 963

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS---VRGQSIRI 683
            GE+LG  QSG  +       L+  LLE A +  K    + PDL +   VRG  + +
Sbjct: 964  GELLGEDQSG--QMAEVGFSLYTELLERAVRSIKQ--GKLPDLDAGEEVRGAEVEL 1015


>gi|291531663|emb|CBK97248.1| transcription-repair coupling factor [Eubacterium siraeum 70/3]
          Length = 1171

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 135/380 (35%), Positives = 204/380 (53%), Gaps = 23/380 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q   I++I  DM +   M R+L GDVG GKT VAL A    +  G Q  I+ P 
Sbjct: 615 YVETDDQLRCIEEIKHDMMRTAPMERLLCGDVGFGKTEVALRAAFKCIGDGKQCAILVPT 674

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QHY+ + K  +   I VE+++       ++  L+++  G+  +++GTH L QD +
Sbjct: 675 TVLAWQHYQTVLKRMEGFDIRVELLSRFRTAKEQKIILKKLEEGELDLVVGTHRLVQDDV 734

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LVI+DE+ RFGV  + KL +  T   VL ++ATPIPRTL +   G  D+S I  
Sbjct: 735 KFKDLGLVIIDEEQRFGVNDKEKLKEAFTNVDVLTLSATPIPRTLNMAMSGIRDMSVIET 794

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFN 508
            P  R PI T ++  +R   + + +   L    + Y++  +IE      ++  S+V   N
Sbjct: 795 PPGDRHPITTYVVEHDR-GVIAQAINKELRRNGQVYYVHNRIESIYSCAADIHSMVPEAN 853

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFK---NGTCKLLIATTVIEVGIDVVDASIIII 565
                    I I HGRMS+   E ++D ++    G   +L+ TT+IE G+DV + + +II
Sbjct: 854 ---------IGIAHGRMSE---EELLDVWRRLIEGEIDVLVCTTLIETGVDVPNCNTLII 901

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLI 620
           ENA+  GLAQLHQLRGRVGR    +     +     LS+ +  RL  ++       GF I
Sbjct: 902 ENADCMGLAQLHQLRGRVGRTNRRAYAYFTFRRGKVLSEIATKRLDAIREFTRFGSGFRI 961

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A +DL+ R  G +LG  QSG
Sbjct: 962 AMKDLEIRGAGSVLGQSQSG 981


>gi|332186186|ref|ZP_08387932.1| transcription-repair coupling factor [Sphingomonas sp. S17]
 gi|332014001|gb|EGI56060.1| transcription-repair coupling factor [Sphingomonas sp. S17]
          Length = 1155

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 138/410 (33%), Positives = 225/410 (54%), Gaps = 33/410 (8%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q+ AI D+L D++    M R++ GDVG GKT VAL A   A  AG Q  ++ 
Sbjct: 607 FPYEETDDQDRAIDDVLGDLTAGKPMDRLVVGDVGFGKTEVALRAAFVAAMAGMQVAVVC 666

Query: 329 PIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P  +LA+QHY  F+ ++ +   I +  ++  +  +  +K  +  A G   I++GTHAL  
Sbjct: 667 PTTLLARQHYNNFLARF-EGFPIKIGRLSRLVTASEAKKVKDGAASGDIDIVVGTHALLA 725

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
            ++++ +L LVIVDE+ RFGV  + +L       H+L +TATPIPRTL +   G  ++S 
Sbjct: 726 KNVEFKRLGLVIVDEEQRFGVTHKERLKALKADVHMLTLTATPIPRTLQMAMSGLRELSV 785

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVV 504
           I   P  R  ++T ++P    D V+ R + +L E   G +++ + P++ +          
Sbjct: 786 IQTPPVDRLAVRTYVMP---WDPVVLR-EALLREHYRGGQSFLVTPRVAD---------- 831

Query: 505 ERFNSLHEHFTSSI-----AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                + E+    +      + HG+MS  + E  M +F +   ++L++TT+IE GID+  
Sbjct: 832 --LPDIEEYLRKEVPEVRYVVAHGQMSPTEVEERMSAFYDRKFEVLVSTTIIESGIDIPS 889

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ +I+  A+ FGLAQL+QLRGRVGR +  +   ++  P   +++ +  RL VL + +  
Sbjct: 890 ANTMIVNRADRFGLAQLYQLRGRVGRSKTRAYAYMVTPPERMMTEAAEKRLKVLSDLDSL 949

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             GF +A  DL  R  G +LG +QSG  K +    EL+ S+LE A  +AK
Sbjct: 950 GAGFQLASHDLDIRGAGNLLGDEQSGHIKEV--GYELYQSMLEEAILEAK 997


>gi|254520523|ref|ZP_05132579.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA]
 gi|226914272|gb|EEH99473.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA]
          Length = 1169

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 143/432 (33%), Positives = 224/432 (51%), Gaps = 25/432 (5%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  + A+ + + +E+    + L   R   K   G     + +  ++     PF  T  Q
Sbjct: 575 EWNKAKAKVKKSINEIAEDLVKLYATRATLK---GYKFRKDTEWQKQFEDEFPFEETPDQ 631

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            +++++I  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QH
Sbjct: 632 LTSLEEIKHDMETDKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAEQH 691

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+ + K   +  + +++I+       ++  L+ +  G   I+IGTH L    I +  L L
Sbjct: 692 YKNMTKRFSDFPVKIDMISRFRSAKEQKATLQAVKEGNVDILIGTHRLVSKDIVFKDLGL 751

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R P
Sbjct: 752 LIIDEEQRFGVAQKEKIKGLKKNVDVLTLSATPIPRTLHMSLTGARDISVIETPPEERYP 811

Query: 458 IKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEH 513
           I+T ++  N  D+++    L+ V   G + Y++  ++E  E      R +V         
Sbjct: 812 IQTYVVEQN--DQLVRDAILREVNRSG-QVYYVYNRVESIEGMAKYIRELVPE------- 861

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               + IIHG+M++   E  M SF N    +L+ TT+IE GID+ + + +II +++  GL
Sbjct: 862 --CKVGIIHGQMTERQLEKEMVSFMNKDYDILVCTTIIETGIDIPNVNTMIIHDSDKMGL 919

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQR 628
           +QL+QLRGRVGR   I+    +Y     L++ +  RL  LK+ TE   GF IA  DL+ R
Sbjct: 920 SQLYQLRGRVGRSNRIAYAYFMYTKDKILTEVAEKRLKALKDFTELGSGFKIAMRDLEIR 979

Query: 629 KEGEILGIKQSG 640
             G ++G  Q G
Sbjct: 980 GAGNMMGSAQHG 991


>gi|124266762|ref|YP_001020766.1| transcription-repair coupling factor [Methylibium petroleiphilum PM1]
 gi|124259537|gb|ABM94531.1| transcription-repair coupling factor [Methylibium petroleiphilum PM1]
          Length = 1184

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 144/411 (35%), Positives = 216/411 (52%), Gaps = 23/411 (5%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q +AI  ++QD+     M R++ GDVG GKT VAL A   AV  G Q  ++AP 
Sbjct: 633  FEETADQRAAIHAVIQDLVSPKPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQVALLAPT 692

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QHY+ I        + V  ++        + A+  +A G   I++GTH L     
Sbjct: 693  TLLAEQHYQNIADRFAKWPVKVAEMSRFRSAKEIKAAMAGLAEGTIDIVVGTHKLLSQDT 752

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L L+I+DE+HRFGV+ +  +        VL +TATPIPRTL +   G  D+S I  
Sbjct: 753  KFANLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSVIAT 812

Query: 451  KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             P  R  IKT +   +   I E + R    L  G + Y++  ++E        ++  R  
Sbjct: 813  APQRRLAIKTFVRGESNGTIREAVMR---ELKRGGQVYFLHNEVE--------TIENRRR 861

Query: 509  SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            +L E    + IA+ HG+M + + E VM  F      LL+ +T+IE GIDV  A+ I++  
Sbjct: 862  TLEELLPEARIAVAHGQMPERELERVMREFVAQKHNLLLCSTIIETGIDVPTANTIVMSR 921

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622
            A+ FGLAQLHQLRGRVGR    +   LL      L+K +  RL  +++ E+   GF +A 
Sbjct: 922  ADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDVEGLTKQAAQRLQAIQDMEELGSGFYLAM 981

Query: 623  EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DL+ R  GE+LG  QSG    +    +L++ +L  A ++ K    ++PDL
Sbjct: 982  HDLEIRGAGEVLGENQSG--NMMEVGFQLYNEMLATAVREMK--AGREPDL 1028


>gi|108801209|ref|YP_641406.1| transcription-repair coupling factor [Mycobacterium sp. MCS]
 gi|119870360|ref|YP_940312.1| transcription-repair coupling factor [Mycobacterium sp. KMS]
 gi|108771628|gb|ABG10350.1| transcription-repair coupling factor [Mycobacterium sp. MCS]
 gi|119696449|gb|ABL93522.1| transcription-repair coupling factor [Mycobacterium sp. KMS]
          Length = 1211

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/377 (33%), Positives = 205/377 (54%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 641  FTETVDQLTAIEEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 700

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH +          + V+ ++     A  R ALE +  G   I+IGTH L Q  +
Sbjct: 701  TLLADQHLQTFTARMAGFPVTVKGLSRFTDPAESRAALEGMKDGSVDIVIGTHRLLQTGV 760

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L L+IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 761  VWKDLGLIIVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 820

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T + P +   +V   L+  L    +A++I  ++   ++  S   ++V    
Sbjct: 821  PPEERYPVLTYVGPQDD-KQVAAALRRELLRDGQAFYIHNRVRTIDQAASKIAALVPE-- 877

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + + + HG+M +   E  ++ F N    +L+ TT++E G+D+ +A+ +I+E A
Sbjct: 878  -------ARVVVAHGQMPEELLERTVEGFWNREYDILVCTTIVETGLDISNANTLIVERA 930

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
            + FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +
Sbjct: 931  DTFGLSQLHQLRGRVGRSRERGYAYFLYPPEQPLTETAYDRLATIAQNNELGAGMAVAMK 990

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 991  DLEIRGAGNVLGAEQSG 1007


>gi|154250423|ref|YP_001411248.1| DEAD/DEAH box helicase domain-containing protein [Fervidobacterium
           nodosum Rt17-B1]
 gi|154154359|gb|ABS61591.1| DEAD/DEAH box helicase domain protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 923

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 141/454 (31%), Positives = 244/454 (53%), Gaps = 20/454 (4%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G+ +  + ++  +  +  P+  T+ Q  AI+D+ +D+     M R+L GD G GKT VA+
Sbjct: 382 GVALPGDSELESEFAKTFPYIETEDQLKAIQDVFEDLVSGKPMDRLLVGDAGYGKTEVAI 441

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A+  A+ +G QA ++AP  +LA+QHYE I +  +   I V ++   + +  R + L  +
Sbjct: 442 RAIFRAIVSGKQAALLAPTTVLARQHYENIAERFKPFGIRVALLDRFVTKKEREEILRDV 501

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +G+  ++IGTH++  +++ +  L LV++DE+ +FGV+Q+ K  +     HVL M+ATPI
Sbjct: 502 KNGKIDLLIGTHSIL-NNVVFADLGLVVIDEEQKFGVEQKEKFKKLRVNVHVLSMSATPI 560

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWIC 489
           PRTL +      + S+I   P GRK ++  I P    D+ I R+ ++  ++ G +  ++ 
Sbjct: 561 PRTLHMALSELKEFSEIKTPPFGRKEVQVHIGP---FDDRIVRIAILREINRGGQVIYVH 617

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            ++     +    V ER   L      SI I HG+ S  + +  +D F +G   +L+ TT
Sbjct: 618 NRV-----NTIYDVYERLKELLPEV--SIVIGHGQQSKSELKRAIDMFFHGKADVLLCTT 670

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           ++E G+DV +A+ +I+++A  +GLAQL+QLRGRVGR ++IS     +   ++     RL 
Sbjct: 671 IVENGVDVPNANTLIVDDAHRYGLAQLYQLRGRVGRSDKISFAYFFHPKHVNDKVLERLY 730

Query: 610 VLKNT---EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            +K+      G  IA  D++ R  G + G++Q G    +     L   LL+   K++K  
Sbjct: 731 AIKSYVGPGSGLKIAMRDMEIRGIGAVFGLEQHGYINDIGLNYYLE--LLDETIKESKGE 788

Query: 667 LTQ--DPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
           L    D +L  + G  I    Y+Y   E  +F R
Sbjct: 789 LISKVDTELEGIPGSIIIPEAYIYDPFERMRFYR 822


>gi|154253521|ref|YP_001414345.1| transcription-repair coupling factor [Parvibaculum lavamentivorans
            DS-1]
 gi|154157471|gb|ABS64688.1| transcription-repair coupling factor [Parvibaculum lavamentivorans
            DS-1]
          Length = 1171

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 140/399 (35%), Positives = 221/399 (55%), Gaps = 23/399 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF+ T+ QE AI  +L+D+++   M R++ GDVG GKT VAL +   A  AG Q  ++ P
Sbjct: 618  PFTETEDQEQAIDAVLEDLARGRPMDRLVCGDVGFGKTEVALRSAFVAALAGFQVAVVVP 677

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QHY       Q   + V  ++  +      +A E +A GQ  I+IGTHAL    
Sbjct: 678  TTLLARQHYRTFAARFQGLPVRVRQMSRLVSAKDMAEAKEGLASGQVDIVIGTHALLGKQ 737

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +++  L LVIVDE+  FGV  + +L +     HVL +TATPIPRTL L   G  ++S I 
Sbjct: 738  VKFRNLGLVIVDEEQHFGVVHKEQLKKLRAEVHVLTLTATPIPRTLQLALSGVRELSLIA 797

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R  ++T + P    D V+ R + +L E   G +++++ P+I +  E+      E 
Sbjct: 798  TPPVDRLAVRTYVSP---FDPVVVR-EALLREHFRGGQSFYVVPRIADLAEA------EE 847

Query: 507  FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            F  L ++       + HG+M+  + E  M +F +G   +L++TT++E G+D+  A+ +++
Sbjct: 848  F--LRQYVPEVKFVLAHGQMAAGEIEDKMTAFYDGKYDVLVSTTIVESGLDIPTANTLVV 905

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLI 620
              A+ FGL+QL+QLRGRVGR +  +   L    +  L+  +  RL VL++ +    GF +
Sbjct: 906  HRADMFGLSQLYQLRGRVGRSKARAYAYLTVPANRTLTAGADKRLRVLQSLDSLGAGFSL 965

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            A  DL  R  G +LG +QSG  K +    EL+  +LE A
Sbjct: 966  ASHDLDIRGAGNLLGDEQSGHIKEV--GYELYQEMLEEA 1002


>gi|32490848|ref|NP_871102.1| hypothetical protein WGLp099 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166054|dbj|BAC24245.1| mfd [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 685

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 204/377 (54%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T+ Q  AI +++ DM + + M R++ GDVG GKT +A+ A   A++   Q  ++ P 
Sbjct: 142 FDLTQDQNKAILEVIDDMKKSSVMNRLICGDVGFGKTEIAMRAAFIAIQNKKQVSLLTPT 201

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L+QQH++  K   +   I + I++  + +  + K ++ I  G+  I+IGTH + Q  I
Sbjct: 202 TLLSQQHFDNFKLRFKKWPIKISILSRFLNKKEQNKVIKMILIGEIDILIGTHRILQKDI 261

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+I+DE+HRFGV Q+  +    T   VL +TATPIPRTL +   G  D+S I+ 
Sbjct: 262 IWKDLGLLIIDEEHRFGVSQKECIKTVRTGVDVLSLTATPIPRTLNMAMNGLRDLSIIST 321

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--FRSVVERFN 508
            P  R P+KT I   N+ D + + +K  LS   + Y++   I    E++   + +  +  
Sbjct: 322 PPKYRLPVKTFIYEYNK-DIIKKAIKNELSRKGQIYYLHNNISTINETSKILKKIAPKV- 379

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                    I I H +M     +  M  FK     +L+ T++IE GID+ +A+ IIIE A
Sbjct: 380 --------RIKISHSKMCKNLLKKTMQDFKENKFDMLVCTSIIETGIDIANANTIIIEKA 431

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEE 623
             FGLAQL+QLRGRVGR    +   L       L++NS  RL  + +      GF ++  
Sbjct: 432 NQFGLAQLNQLRGRVGRSFRQAYAYLFTSKSNSLNENSKKRLEAISSINKLGSGFSLSIN 491

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  GE+LG KQSG
Sbjct: 492 DLEIRGSGELLGSKQSG 508


>gi|327403557|ref|YP_004344395.1| transcription-repair coupling factor [Fluviicola taffensis DSM
           16823]
 gi|327319065|gb|AEA43557.1| transcription-repair coupling factor [Fluviicola taffensis DSM
           16823]
          Length = 1113

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 138/435 (31%), Positives = 224/435 (51%), Gaps = 16/435 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  + K + G   + +  +  ++  +  +  T  Q  A + + +DM ++  M R++ 
Sbjct: 524 LIQLYAKRKSQPGFAFSPDTYLQNELEASFMYEDTPDQLKATQAVKEDMEKETPMDRLVC 583

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT +A+ A   AV    Q  ++ P  IL+ QH    K+  +N    V+ I    
Sbjct: 584 GDVGFGKTEIAMRAAFKAVADSKQVAVLVPTTILSHQHARSFKERFKNFPANVDYINRFK 643

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                   L+++  G+  I++GTH +  D +++  L L+I+DE+ +FGV  + KL    T
Sbjct: 644 SAKEITATLKKVESGEVDILVGTHKIVSDKVKFKDLGLIIIDEEQKFGVAVKDKLKTLKT 703

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L +TATPIPRTL  + +G  D+S I   P  R+P+ T +I  N  + + + +   +
Sbjct: 704 TVDTLTLTATPIPRTLQFSLMGARDLSIINTPPPNRQPVLTEVITFNE-EAIRDAISYEV 762

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S G + Y++  ++   KE     ++ R           +AI HG+M     E VM  F  
Sbjct: 763 SRGGQVYFVNNRLANIKE--IAGMISRLCP-----GVRVAIGHGQMDGKQLEKVMMDFIQ 815

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
           G   +LIATT+IE GID+ +A+ III ++  FGL+ LHQLRGRVGR  +   C L+  P 
Sbjct: 816 GEYDVLIATTIIESGIDISNANTIIINDSHMFGLSDLHQLRGRVGRSNKKGFCYLISQPI 875

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPEL 651
             L+  +  RL  L    D   GF IA +DL  R  G +LG +QSG      F + Q  L
Sbjct: 876 SLLTSEARKRLEALVQFSDLGSGFNIAMKDLDIRGAGNLLGGEQSGFISEIGFEMYQKIL 935

Query: 652 HDSLLEIARKDAKHI 666
           ++++ E+  ++ K +
Sbjct: 936 NEAMDELKEEEFKDL 950


>gi|319949680|ref|ZP_08023714.1| transcription-repair coupling factor [Dietzia cinnamea P4]
 gi|319436671|gb|EFV91757.1| transcription-repair coupling factor [Dietzia cinnamea P4]
          Length = 1222

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 125/376 (33%), Positives = 200/376 (53%), Gaps = 13/376 (3%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF+ T  Q SAI+++  DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P
Sbjct: 648  PFTETVDQLSAIEEVKADMEKSAPMDRVVVGDVGYGKTEVAVRAAFKAVQDGTQVAVLVP 707

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQH     +      + ++ ++     A  ++ L+ +A G   ++IGTH L    
Sbjct: 708  TTLLAQQHLATFTERMTGFPVTIKGLSRFTSDAEAKEILKGLADGTVDVVIGTHRLLATG 767

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +++  L LVIVDE+ RFGV+ +  +T   T   VL M+ATPIPRTL ++  G  ++S+I 
Sbjct: 768  VRWKNLGLVIVDEEQRFGVEHKEHITSLRTHVDVLTMSATPIPRTLEMSLAGIREMSQIL 827

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R P+ T +   +         + +L EG+  Y         +     S   R   
Sbjct: 828  TPPEERLPVLTYVGAYSDKHVAAAIRRELLREGQVFYV------HNRVRTIDSTAARIRD 881

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            L     + + + HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I++ ++
Sbjct: 882  LVPE--ARVVVAHGQMGEEQLEQTVGGFWNREYDVLVCTTIVETGLDISNANTLIVDRSD 939

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEED 624
              GL+Q+HQLRGRVGR  E      LY P  PL++ +Y RL+ +    D   G  +A +D
Sbjct: 940  QLGLSQMHQLRGRVGRSRERGYAYFLYDPEKPLTETAYDRLATIAQNNDLGAGMAVAMKD 999

Query: 625  LKQRKEGEILGIKQSG 640
            L+ R  G +LG +QSG
Sbjct: 1000 LELRGAGNVLGAEQSG 1015


>gi|313676238|ref|YP_004054234.1| transcription-repair coupling factor [Marivirga tractuosa DSM 4126]
 gi|312942936|gb|ADR22126.1| transcription-repair coupling factor [Marivirga tractuosa DSM 4126]
          Length = 1122

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/398 (32%), Positives = 209/398 (52%), Gaps = 19/398 (4%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   N +  +  ++  +  +  T  Q  +  D+  DM Q + M R++ GDVG GKT VA+
Sbjct: 540 GFACNDDSFLQAELESSFIYEDTPDQAKSTADVKSDMEQPHPMDRLVCGDVGFGKTEVAI 599

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV+   Q  ++ P  ILA QH+    +  +   + VE I         ++ L+R 
Sbjct: 600 RAAFKAVDNNKQVAVLVPTTILAMQHFRTFSERLEKMPVTVEYINRFKSTKQIKEILKRT 659

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G+  I+IGTH +    +++  L L+++DE+ +FGV  + KL Q      VL +TATPI
Sbjct: 660 EEGKVDILIGTHRIVNKDVKFKDLGLLVIDEEQKFGVSVKDKLKQFRVNVDVLTLTATPI 719

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICP 490
           PRTL  + +G  D+S I   P  R+P+ T +   N  +E++ + +   L  G + +++  
Sbjct: 720 PRTLHFSLMGARDLSVIQTPPPNRQPVTTALHTFN--EEILRDAIAFELQRGGQVFFVHN 777

Query: 491 QIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +I +         +E+  ++       + I + HG+M     E VM  F  G   +L++T
Sbjct: 778 RIGD---------IEQVGNIILKLVPDARIGVAHGQMDGAKLEKVMMRFIEGEYDVLVST 828

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYT 606
            +IE G+D+ +A+ III +A  FG++ LHQ+RGRVGR  + + C LL  P   LS +S  
Sbjct: 829 NIIESGLDIPNANTIIINHAHMFGMSDLHQMRGRVGRSNKKAFCYLLTPPTIGLSSDSRK 888

Query: 607 RLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           RL+ L+   +  DGF +A  DL  R  G +LG +QSG 
Sbjct: 889 RLTTLEEFSDLGDGFKVAMRDLDIRGAGNMLGAEQSGF 926


>gi|311743167|ref|ZP_07716975.1| transcription-repair coupling factor [Aeromicrobium marinum DSM
           15272]
 gi|311313847|gb|EFQ83756.1| transcription-repair coupling factor [Aeromicrobium marinum DSM
           15272]
          Length = 1169

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 205/374 (54%), Gaps = 17/374 (4%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q S I+++ +DM +   M R++ GDVG GKT +A+ A   A++ G Q +++ P  +L
Sbjct: 628 TPDQLSTIEEVKRDMERVVPMDRLVCGDVGYGKTEIAVRAAFKAIQDGKQVILLVPTTLL 687

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            QQHY    +      + +  ++    ++  +  LE +A G   ++IGTH L Q  ++  
Sbjct: 688 VQQHYATFAERFGQFPVSIRPLSRFQTESESKATLEALAEGSVDLVIGTHRLLQPGVRIK 747

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L LVIVDE+ RFGV+ +  L     A  VL M+ATPIPRTL +   G  ++S I   P 
Sbjct: 748 DLGLVIVDEEQRFGVEHKEALKHLRAAVDVLSMSATPIPRTLEMAVTGIREMSTIATPPE 807

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLH 511
            R P+ + + P      V    + +L EG +A++I  +++  +K  +  R +V       
Sbjct: 808 ERHPVLSFVGPYEDRQVVAAIRRELLREG-QAFYIHNRVQSIDKAVARLRQLVPEVR--- 863

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 +A  HG+MS+   E VM  F      +L+ TT++E G+DV +A+ +IIE ++  
Sbjct: 864 ------VAAAHGQMSEAQLEQVMLDFWEKRYDVLVCTTIVESGLDVSNANTMIIERSDTL 917

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
           GL+QLHQLRGRVGRG E +    LY P  PL++ ++ RL+ +    +   G  +A +DL+
Sbjct: 918 GLSQLHQLRGRVGRGSERAYAYFLYPPDKPLTETAHDRLATIAQHSELGGGMAVAMKDLE 977

Query: 627 QRKEGEILGIKQSG 640
            R  G +LG +QSG
Sbjct: 978 IRGAGNLLGGEQSG 991


>gi|91977093|ref|YP_569752.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            BisB5]
 gi|91683549|gb|ABE39851.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            BisB5]
          Length = 1172

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 144/414 (34%), Positives = 223/414 (53%), Gaps = 23/414 (5%)

Query: 255  INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            + VE  +  +     P+  T+ Q +AI   L D+ +   M R++ GDVG GKT VAL A 
Sbjct: 605  LQVEPHLYDEFCARFPYDETEDQLAAINAALGDLGRGMPMDRLVCGDVGFGKTEVALRAA 664

Query: 315  AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A    G Q  ++ P  +LA+QH +      +   + V   +  +      +  + IA G
Sbjct: 665  FAVALDGKQVAVVVPTTLLARQHAKTFADRFRGFPVNVGQASRLVSPKELTQVKKGIADG 724

Query: 375  QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            Q  I++GTHAL   +I++  L LV+VDE+  FGV  + +L Q     HVL ++ATPIPRT
Sbjct: 725  QIDIVVGTHALLGKAIKFKDLGLVVVDEEQHFGVTHKERLKQLRAEVHVLTLSATPIPRT 784

Query: 435  LVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQI 492
            L L   G  D+S I   P  R  ++T + P +   I E + R +     G +A+++CP+I
Sbjct: 785  LQLAMTGVRDLSIIASPPVDRLAVRTFVAPHDPLMIREALLRERY---RGGQAFYVCPRI 841

Query: 493  EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            ++  E      V+ F  L +H     +A+ HG+M     E +M +F +G   +L++TT++
Sbjct: 842  DDLAE------VKDF--LDKHVPEMKVAVAHGQMPPTVIEDIMSAFYDGKYDILLSTTIV 893

Query: 552  EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRL 608
            E G+D+  A+ +II  A+ FGLAQL+QLRGRVGR  ++ +  L   P    ++  +  RL
Sbjct: 894  ESGLDIPTANTLIIHRADMFGLAQLYQLRGRVGR-SKLRAYALFTLPSQHKITPQAERRL 952

Query: 609  SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             VL++ E    GF +A  DL  R  G +LG +QSG  K +    EL+ S+LE A
Sbjct: 953  KVLQSLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGF--ELYQSMLEEA 1004


>gi|254444929|ref|ZP_05058405.1| transcription-repair coupling factor [Verrucomicrobiae bacterium
           DG1235]
 gi|198259237|gb|EDY83545.1| transcription-repair coupling factor [Verrucomicrobiae bacterium
           DG1235]
          Length = 1144

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 131/380 (34%), Positives = 208/380 (54%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q  AIK+   DM ++  M R++ GDVG GKT VA+ A   AV    Q  I+
Sbjct: 580 SFPFKETPDQLKAIKESKGDMEKEIPMDRLICGDVGFGKTEVAIRAAFKAVMDDKQVAIL 639

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LAQQH+   +       I+VE ++     A  +K L+  A G+  I+IGTH + Q
Sbjct: 640 VPTTVLAQQHFLNFRDRMAGYPIVVETVSRFRKPAEVKKILQSTAAGKVDILIGTHRILQ 699

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             + +  L LV++DE+ RFG++ +    +  +   +L M+ATPIPRTL +   G  ++S 
Sbjct: 700 KDVSFKDLGLVVIDEEQRFGIKHKEVFKEWRSTVDILTMSATPIPRTLYMALTGARELSV 759

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  RKPI+T++   +   + EVI R    ++ G + +++  +++        +V  
Sbjct: 760 IETAPVERKPIQTIVKSYDDALVSEVIRR---EIARGGQVFYLHNRVQ-----TINTVAA 811

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +   +      SI + HG+M +   E+VM  F N   ++L+ TT+IE G+D+ + + III
Sbjct: 812 KLEKMLPEV--SIGVGHGQMDEKKLENVMLDFVNQKYQVLVCTTIIESGLDIPNCNTIII 869

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLI 620
           E A+ FGL+QL+QLRGRVGR +  +   LL   H  L   +  RL+ +++      GF +
Sbjct: 870 EGADRFGLSQLYQLRGRVGRFKRQAYAYLLLHKHKRLMDVARKRLAAIRHHNQLGAGFRL 929

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  G +LG +QSG
Sbjct: 930 AMRDLELRGAGNLLGSEQSG 949


>gi|227485004|ref|ZP_03915320.1| transcription-repair coupling factor [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237001|gb|EEI87016.1| transcription-repair coupling factor [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 1162

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 142/437 (32%), Positives = 225/437 (51%), Gaps = 33/437 (7%)

Query: 218 FEW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +W  S  R + A DE+    + L   R    KE G   + +     +   + P+  T S
Sbjct: 567 LQWQKSKQRAKKAVDEIADDLVKLYAKRA---KEKGHAFSKDTTWQVEFENSFPYDETFS 623

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  +I++I  DM  +N M R+L GDVG GKT VAL A   A+  G Q   + P  ILA Q
Sbjct: 624 QLRSIEEIKADMESENPMDRLLCGDVGYGKTEVALRAAFKAIMDGYQVAFLVPTTILANQ 683

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY  + +  ++  I   +++    +A   K L+ I  G+  I++GTH L  D +++ KL 
Sbjct: 684 HYHTMVERFKDFPITCAMLSRFNTKAKDDKILKDIKSGKIDIVVGTHRLLSDDVKFNKLG 743

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+I+DE+ RFGV+ + K  +   +  VL ++ATPIPRTL ++  G  D+S + + P  R 
Sbjct: 744 LLIIDEEQRFGVKHKEKFKKFKASIDVLTLSATPIPRTLQMSLSGIRDLSTLDDPPEERL 803

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-- 514
           P+ T ++  +               G     I  +I    +  F  V  R N + + F  
Sbjct: 804 PVNTYVLEFD--------------SGIIRDAILKEINRNGQVYF--VYNRVNDIEKLFLK 847

Query: 515 ------TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                  +SI I+HG+MS    E++M  F +G   +L+ATT+IE G+D+ + + I+I ++
Sbjct: 848 IKDLVPEASIEIVHGQMSPRQIENIMMDFIDGKIDILLATTIIETGMDIKNVNTIVIYDS 907

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEE 623
           +  GL+QL+QL+GR+GRG   S     Y     L++    RL  +++  D   G+ IA +
Sbjct: 908 DLMGLSQLYQLKGRIGRGYRSSYAYFTYRSGKILTEIGEKRLKSIRDFSDFGSGYKIAMK 967

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G +LG  QSG
Sbjct: 968 DLELRGAGNLLGESQSG 984


>gi|126437189|ref|YP_001072880.1| transcription-repair coupling factor [Mycobacterium sp. JLS]
 gi|126236989|gb|ABO00390.1| transcription-repair coupling factor [Mycobacterium sp. JLS]
          Length = 1211

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 128/377 (33%), Positives = 205/377 (54%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 641  FTETVDQLTAIEEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 700

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH +          + V+ ++     A  R ALE +  G   I+IGTH L Q  +
Sbjct: 701  TLLADQHLQTFTARMAGFPVTVKGLSRFTDPAESRAALEGMKDGSVDIVIGTHRLLQTGV 760

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L L+IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 761  VWKDLGLIIVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 820

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T + P +   +V   L+  L    +A++I  ++   ++  S   ++V    
Sbjct: 821  PPEERYPVLTYVGPQDD-KQVAAALRRELLRDGQAFYIHNRVRTIDQAASKIAALVPE-- 877

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + + + HG+M +   E  ++ F N    +L+ TT++E G+D+ +A+ +I+E A
Sbjct: 878  -------ARVVVAHGQMPEELLERTVEGFWNREYDILVCTTIVETGLDISNANTLIVERA 930

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
            + FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +
Sbjct: 931  DTFGLSQLHQLRGRVGRSRERGYAYFLYPPEQPLTETAYDRLATIAQNNELGAGMAVAMK 990

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 991  DLEIRGAGNVLGAEQSG 1007


>gi|282859198|ref|ZP_06268320.1| transcription-repair coupling factor [Prevotella bivia JCVIHMP010]
 gi|282588017|gb|EFB93200.1| transcription-repair coupling factor [Prevotella bivia JCVIHMP010]
          Length = 1169

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 128/400 (32%), Positives = 216/400 (54%), Gaps = 15/400 (3%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           + E G   + +  +  ++  +  +  T  Q  A +D+ QDM     M R++ GDVG GKT
Sbjct: 585 RHEKGFAFSPDSFMQHELEASFLYEDTPDQLKATQDLKQDMESARPMDRLVCGDVGFGKT 644

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A     Q  ++ P  +LA QHY+  +   ++  + V+ ++        ++ 
Sbjct: 645 EVAIRAAFKAAVDNKQVAVLVPTTVLAFQHYKSFQSRLKDMPVRVDYLSRARSTKQTKQI 704

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           LE +A G+ +I++GTH L   S+++  L L+I+DE+ +FGV  + KL Q  T    L M+
Sbjct: 705 LEDLAEGKINILVGTHKLLGKSVKWQDLGLLIIDEEQKFGVSTKEKLRQIKTNVDTLTMS 764

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486
           ATPIPRTL  + +G  D+S +   P  R PI+T I+  +   E+I + +   +S   + +
Sbjct: 765 ATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIVDFSH--EIIADAINFEMSRNGQVF 822

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           ++  +I   +  +  +++ R+          +AI HG+M   + E ++  F N    +L+
Sbjct: 823 FVNDRIGNLQ--DLAAMIRRYVP-----DCRVAIGHGQMKPEELEEILLGFMNYDYDVLL 875

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNS 604
           +TT++E GID+ +A+ III +A  FGL+ LHQ+RGRVGR  + + C L+  P   L+  +
Sbjct: 876 STTIVENGIDISNANTIIINDAHRFGLSDLHQMRGRVGRSNKKAFCYLVAPPLASLTTEA 935

Query: 605 YTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             RL  L+   D   GF +A +DL  R  G +LG +QSG 
Sbjct: 936 RRRLEALETFSDLGSGFSLAMQDLDIRGAGNLLGSEQSGF 975


>gi|325954433|ref|YP_004238093.1| transcription-repair coupling factor [Weeksella virosa DSM 16922]
 gi|323437051|gb|ADX67515.1| transcription-repair coupling factor [Weeksella virosa DSM 16922]
          Length = 1114

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 135/409 (33%), Positives = 215/409 (52%), Gaps = 18/409 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  QE A  D+  DM  +  M R++ GDVG GKT VA+ A   A   G Q  ++ P 
Sbjct: 548 YEDTPDQEKATLDVKNDMESERPMDRLVCGDVGFGKTEVAIRAAFKAAVDGKQVAVLVPT 607

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH++      +   + +E +        +   L  +  G+  IIIGTH L    +
Sbjct: 608 TILAFQHFKTFTDRLKEFPVQIEYLNRFTTTKKKNAILADLEAGKVDIIIGTHQLVNPKV 667

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+I+DE+H+FGV  + KL         L +TATPIPRTL  + +   D+S I  
Sbjct: 668 KFKDLGLLIIDEEHKFGVSVKDKLKTLRANIDTLTLTATPIPRTLQFSLMAARDLSVIKT 727

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R+P++T +I  N  + + + +   +  G + ++I  +++  KE     +V+R    
Sbjct: 728 PPPNRQPVETNLIEFNE-EAIRDAILYEMQRGGQIFFIHNRVQTLKE--IAGMVQRLVP- 783

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + IA  HG+M     E++M  F +G   +LI+TT+IE G+DV +A+ I+I +A++
Sbjct: 784 ----DARIATGHGQMDGKQLEAIMLDFIDGQYDVLISTTIIESGLDVPNANTILINDAQN 839

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEED 624
           FGLA LHQ+RGRVGR    + C L+  PP   L+  +  RL  ++   D   GF IA +D
Sbjct: 840 FGLADLHQMRGRVGRSNRKAFCYLI-APPVSVLTNEARKRLQAIEQFSDLGSGFNIAMKD 898

Query: 625 LKQRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQD 670
           L+ R  G +LG +Q+G      F   Q  L++++ E+   D K +   +
Sbjct: 899 LEIRGAGNLLGAEQTGFMMEIGFETYQKILNEAIEELKESDFKELFEHE 947


>gi|319762021|ref|YP_004125958.1| transcription-repair coupling factor [Alicycliphilus denitrificans
           BC]
 gi|317116582|gb|ADU99070.1| transcription-repair coupling factor [Alicycliphilus denitrificans
           BC]
          Length = 1163

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 138/386 (35%), Positives = 203/386 (52%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++ + +  F  T  Q++AI  ++QDM     M R++ GDVG GKT VAL A   AV  G 
Sbjct: 601 EQFVADFGFEETADQKAAIHAVVQDMISPRPMDRLVCGDVGFGKTEVALRACFVAVTGGK 660

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q   +AP  +LA+QHY  +        + V  ++          A++ IA G   I++GT
Sbjct: 661 QVAFLAPTTLLAEQHYRTLCDRFAKWPVKVAEVSRFRSGKEITAAVKGIADGTVDIVVGT 720

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L  +S ++  L L+I+DE+HRFGV+ +  + Q      VL +TATPIPRT+ +   G 
Sbjct: 721 HKLLSESTKFKNLGLLIIDEEHRFGVRHKEAMKQLRAEVDVLTLTATPIPRTMGMALEGL 780

Query: 443 IDISKITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D+S I   P  R  IKT +       I E + R    L  G + Y++  ++E       
Sbjct: 781 RDLSVIATAPQRRLAIKTFVRSEGTGVIREAVLR---ELKRGGQCYFLHNEVE------- 830

Query: 501 RSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            ++  R   L E    + IA+ HG+M + + E VM  F      +L+ +T+IE GIDV  
Sbjct: 831 -TIENRRQKLEEILPEARIAVAHGQMPERELEKVMRDFVAQRYNILLCSTIIETGIDVPS 889

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED- 616
           A+ I+I  A+ FGLAQLHQLRGRVGR    +   L+      L+K +  RL  ++  E+ 
Sbjct: 890 ANTILISRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDLDGLTKQAQQRLDAIQQMEEL 949

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 950 GSGFYLAMHDLEIRGAGEVLGENQSG 975


>gi|261856564|ref|YP_003263847.1| transcription-repair coupling factor [Halothiobacillus neapolitanus
           c2]
 gi|261837033|gb|ACX96800.1| transcription-repair coupling factor [Halothiobacillus neapolitanus
           c2]
          Length = 1159

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 134/385 (34%), Positives = 207/385 (53%), Gaps = 19/385 (4%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +   N  F  T  Q+ AI  +L DM++   M R++ GDVG GKT VA+ A   AV  G Q
Sbjct: 601 RFANNFAFETTPDQQLAIDSVLADMARTQPMDRVVCGDVGFGKTEVAMRAAFVAVMNGKQ 660

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             ++ P  +LA+QH    +       I +E ++         + L  +A G+  ++IGTH
Sbjct: 661 VAVLVPTTLLAEQHLRNFRDRFAGWPINIEGLSRMSNAKKTTEVLASVASGKVDVVIGTH 720

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L  D + + +L LVI+DE+ RFGV+ + +L +      +L +TATPIPRTL +   G  
Sbjct: 721 KLLSDHLDFKELGLVIIDEEQRFGVRHKEQLKRLRAEVDLLTLTATPIPRTLNMALSGIR 780

Query: 444 DISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           D+S I   P  R  +KT+++  +  +I E ++R    L  G + Y++  ++        R
Sbjct: 781 DLSIIATPPRERLSVKTLLLRWDDAQIREAVQR---ELKRGGQVYFLHNEV--------R 829

Query: 502 SVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           S+      L +    + IA+ HG++S+   E +M  F +    +L++TT+IE GIDV  A
Sbjct: 830 SIERMAKQLADLIPEARIAVAHGQLSERGLEQIMADFYHQRFNVLLSTTIIESGIDVPTA 889

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
           + I+I  A+ FGLAQLHQLRGRVGR    +   L+   P  ++ ++  RL  L   E+  
Sbjct: 890 NTILINRADKFGLAQLHQLRGRVGRSHHRAYAYLITPEPAQMTPDAVKRLDALAALEELG 949

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640
            GF +A  DL+ R  GE+LG  QSG
Sbjct: 950 VGFTLATHDLEIRGAGELLGDGQSG 974


>gi|193212321|ref|YP_001998274.1| transcription-repair coupling factor [Chlorobaculum parvum NCIB
           8327]
 gi|193085798|gb|ACF11074.1| transcription-repair coupling factor [Chlorobaculum parvum NCIB
           8327]
          Length = 1097

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 136/410 (33%), Positives = 222/410 (54%), Gaps = 24/410 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q  AI+++ +DM   + M R++ GD G GKT +A+ A   AVE   Q  I+ P 
Sbjct: 524 FEETPDQLKAIQEVKKDMQSPSPMDRLICGDAGFGKTEIAMRAAFKAVEGKKQVAILTPT 583

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            IL  QH E   +   N  + + +++  +P+  +++ +ERIA G   I+IGTH L    +
Sbjct: 584 TILTHQHAESFARRFANFPVNIAVLSRFVPRKEQKETIERIASGAVDIVIGTHRLVSKDV 643

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+++DE+  FGV  + KL Q+      L M+ATPIPRT+  + LG  DIS ++ 
Sbjct: 644 VFKDLGLLVIDEEQHFGVDTKEKLRQQFPGVDTLTMSATPIPRTMQFSMLGARDISIVST 703

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVER 506
            P  R+P++T+I   +   +   I+R   +  EG + +++  +I   ++ E   R +V  
Sbjct: 704 PPKNRQPVETIISEFDAGVVQGAIKR--EIQREG-QVFFLNNRIASLDEVERTIRELVP- 759

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                    + IA  HG+M   + E++M  F N    +LIAT++I  G+D+ +A+ III 
Sbjct: 760 --------YARIASAHGQMPARELENIMMDFMNQELDVLIATSIIGSGLDISNANTIIIN 811

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIA 621
            A+ FGL+ L+QLRGRVGR E  + C L+  P   L + +  R++V++  TE   G  +A
Sbjct: 812 RADMFGLSDLYQLRGRVGRSERKAYCYLVTPPLHTLKREAVQRIAVIETFTELGSGINVA 871

Query: 622 EEDLKQRKEGEILGIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILT 668
             DL  R  G +LG +QSG      F + Q  + +++ E+   +  HI +
Sbjct: 872 LRDLDIRGAGNLLGAEQSGFIHEIGFDLYQKMIEETVAELKLTEFNHIFS 921


>gi|261880194|ref|ZP_06006621.1| transcription-repair coupling factor [Prevotella bergensis DSM 17361]
 gi|270333168|gb|EFA43954.1| transcription-repair coupling factor [Prevotella bergensis DSM 17361]
          Length = 1210

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 132/409 (32%), Positives = 214/409 (52%), Gaps = 17/409 (4%)

Query: 240  LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            L+ +  + +KE G   + +  + Q++  +  +  T  Q  A +D+  DM +   M R++ 
Sbjct: 616  LIRLYAKRRKEKGYAFSPDSFMQQELEASFLYEDTPDQLKATQDVKADMERARPMDRLVC 675

Query: 300  GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GDVG GKT VA+ A   A     Q  ++ P  +LA QH++  +   ++  + V+ ++   
Sbjct: 676  GDVGFGKTEVAVRAAFKAACDSKQVAVLVPTTVLAFQHFQTFRDRLRDFPVRVDYLSRAR 735

Query: 360  PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                 R+ LE +  G+  IIIGTH L   +++++ L L+I+DE+H+FGV  + KL +  T
Sbjct: 736  SAGQTRQVLEDLESGKIDIIIGTHKLLGKNVKWHDLGLLIIDEEHKFGVSTKEKLRKLKT 795

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
                + M+ATPIPRTL  + +G  D+S +   P  R PI T +       EVI + +   
Sbjct: 796  NVDTITMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIHTELSTFGH--EVITDAINFE 853

Query: 479  LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
            +S   + +++  +I     SN   +    N + +H     +AI HG+MS  + E V+  F
Sbjct: 854  MSRNGQVFFVNNRI-----SNLPEIA---NLIQKHIPDCRVAIGHGKMSPEELEKVVMGF 905

Query: 538  KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             N    +L++TT++E GID+ +A+ III  A  FGL+ LHQ+RGRVGR    + C LL  
Sbjct: 906  INYDYDVLLSTTIVENGIDIPNANTIIINGAHRFGLSDLHQMRGRVGRSNRKAFCYLLAP 965

Query: 598  P-----PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
            P     P ++     L        GF +A +DL  R  G +LG +QSG 
Sbjct: 966  PKSVLTPEARRRLEALEAFSELGSGFNLAMQDLDIRGAGNLLGAEQSGF 1014


>gi|262037132|ref|ZP_06010624.1| transcription-repair coupling factor [Leptotrichia goodfellowii
           F0264]
 gi|261748820|gb|EEY36167.1| transcription-repair coupling factor [Leptotrichia goodfellowii
           F0264]
          Length = 1019

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 208/376 (55%), Gaps = 14/376 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+ AI D+ +DM     M RI+ GDVG GKT VA+ A   A+E   Q  ++AP
Sbjct: 475 PFEETEDQKKAINDVKKDMEGPYIMDRIVCGDVGYGKTEVAMRAAFKAIENSRQVALIAP 534

Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             +LA+QHY+ F+++Y +N  + +E ++  + Q+  ++ L+ + +G   ++IGTH L  +
Sbjct: 535 TTVLAEQHYKRFMQRY-ENYPVTIENLS-RLTQSKSKEILKNMKNGVTDLVIGTHRLLSE 592

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +++  L L+I+DE+ +FGV+ +  + +K     VL +TATPIPRTL +  LG  +IS I
Sbjct: 593 DVEFNNLGLLIIDEEQKFGVKAKETIKKKRQKVDVLTLTATPIPRTLNMALLGIREISVI 652

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R PI T +            LK +  +G + ++I   +      + +  +E   
Sbjct: 653 DTPPTNRLPIITEVEDWEEEVVKKAILKELSRDG-QVFYIYNDV-----KSMKYKIEELR 706

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            +   F   I  IHG++   + +  +  F+ G   +L+A+T+IE GID+ +A+ I+IEN 
Sbjct: 707 KILPDFV-KIEFIHGQLLPKEIKDKIRRFEQGEFDILLASTIIENGIDIPNANTILIENF 765

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE----DGFLIAEED 624
              GL+Q++QLRGRVGR      C LL     +K    +   ++  E     GF I+ ED
Sbjct: 766 NALGLSQVYQLRGRVGRSNRQGYCYLLKTRTATKKGQKKEESMQKVEGIKSGGFQISMED 825

Query: 625 LKQRKEGEILGIKQSG 640
           LK R  GEILG KQ G
Sbjct: 826 LKIRGAGEILGEKQHG 841


>gi|313902509|ref|ZP_07835910.1| transcription-repair coupling factor [Thermaerobacter subterraneus
            DSM 13965]
 gi|313467195|gb|EFR62708.1| transcription-repair coupling factor [Thermaerobacter subterraneus
            DSM 13965]
          Length = 1196

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 145/460 (31%), Positives = 238/460 (51%), Gaps = 25/460 (5%)

Query: 210  HNPRKAK--DFEWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
            H PR A+    EW     R + +  E+    +AL   R+  +   G   + +    ++  
Sbjct: 576  HQPRLARLGSGEWNKVKQRVKESVREMAGELLALYAARQSVR---GHAFSPDTPWQRQFE 632

Query: 267  RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
               P+  T  Q +AI  I  DM +   M R+L GDVG GKT VA+ A   AV+ G Q  +
Sbjct: 633  DAFPYQETPDQLAAIAAIKADMERPVPMDRLLVGDVGFGKTEVAMRAAFKAVQDGKQVAV 692

Query: 327  MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            + P  +LA QH    K+      + +  ++     A + + L  +A G   I+IGTH L 
Sbjct: 693  LVPTTVLAYQHERTFKERFAPFPVTIRTLSRFASPAEQAEILTGLAQGTVDIVIGTHRLV 752

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            Q  +++  L L+I+DE+HRFGV  + +L Q      VL ++ATPIPRTL +   G  D+S
Sbjct: 753  QPDVRFKDLGLLIIDEEHRFGVAHKERLKQLKQNVDVLTLSATPIPRTLHMALAGIRDLS 812

Query: 447  KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            +I   P  R P++T ++  +   + + I+R    L  G + +++  +++     +  +V 
Sbjct: 813  RIDTPPENRFPVQTFVVEWHESLVRDAIQR---ELRRGGQVFYVHNRVQ-----SIHAVR 864

Query: 505  ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             R   L     +  A+ HG+M++ + E VM  F  G   +L+ TT+IE G+D+ + + +I
Sbjct: 865  RRLERLLPE--ARFAVAHGQMAEGELERVMVDFMEGKADVLVCTTIIESGLDIPNVNTLI 922

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619
            +E+A+  GLAQL+QLRGRVGR + ++     Y     L++++  RL  +K+  +   GF 
Sbjct: 923  VEDADRMGLAQLYQLRGRVGRSDRVAYAYFTYRRDKVLTEDAQKRLQAIKDFTELGAGFK 982

Query: 620  IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +A  DL+ R  G +LG +Q G    L    +L+  LLE A
Sbjct: 983  LALRDLEIRGAGNLLGAEQHGF--MLSVGFDLYTQLLEEA 1020


>gi|157826877|ref|YP_001495941.1| transcription-repair coupling factor [Rickettsia bellii OSU 85-389]
 gi|157802181|gb|ABV78904.1| Transcription-repair coupling factor [Rickettsia bellii OSU 85-389]
          Length = 1120

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 143/437 (32%), Positives = 233/437 (53%), Gaps = 31/437 (7%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           +IAL LM+   K+++     +E  + +  K     PF+ T+ Q +AI DI +D+S    M
Sbjct: 539 EIALHLMQIAAKRKLNTTAAIEFDLEEYDKFCAKFPFTETEDQLNAINDIREDLSNGMLM 598

Query: 295 LRILQGDVGSGKTLVALIA--MAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            R++ GDVG GKT VA+ A  M A    E   Q  ++ P  IL  QH+    +  +++ +
Sbjct: 599 DRLICGDVGFGKTEVAMRASFMVAKSLNENSPQVAVVVPTTILCSQHFARFTERFKDSDL 658

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            ++ ++  +     +     +  G+ +IIIGTH+L     ++  L L+I+DE+  FGV Q
Sbjct: 659 NIKQLSSVVSSKEAKIVRSELESGKINIIIGTHSLLHKVTKFCNLKLLIIDEEQHFGVGQ 718

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +  L    ++ HVL M+ATPIPRTL ++     ++S I   P  R  ++T ++P    D 
Sbjct: 719 KEFLKSLKSSTHVLAMSATPIPRTLQMSMTDLKELSIIATPPLNRLEVRTSVMP---FDP 775

Query: 471 VIERLKVVLSE---GKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           VI R   +L E   G K++++ P+I   E  E   + +V            S  + HG+M
Sbjct: 776 VIIR-DALLREHFRGGKSFFVVPRINDIEDIEKQLKQIVPEL---------SYKVAHGKM 825

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S    + +M  F  G   +LI+TT+IE GID+ DA+ +II  A+  GL+QL+QLRGR+GR
Sbjct: 826 SPNKIDEIMSEFYAGKFDILISTTIIESGIDIQDANTMIIHKADMLGLSQLYQLRGRIGR 885

Query: 586 GE--EISSCILLYHPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQSG 640
           G+    +   L  H  ++ +S  RL +++N+     GF IA  D+  R  G ++G +QSG
Sbjct: 886 GKMRGYAYLTLPSHKKMTPHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGEEQSG 945

Query: 641 MPKFLIAQPELHDSLLE 657
             + +    EL+  +LE
Sbjct: 946 QIREV--GTELYQEMLE 960


>gi|332530190|ref|ZP_08406138.1| transcription-repair coupling factor [Hylemonella gracilis ATCC
            19624]
 gi|332040382|gb|EGI76760.1| transcription-repair coupling factor [Hylemonella gracilis ATCC
            19624]
          Length = 1177

 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 149/431 (34%), Positives = 224/431 (51%), Gaps = 21/431 (4%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            ++   +  F  T  Q++AI  ++QDM     M R++ GDVG GKT VAL A   AV  G 
Sbjct: 614  EQFANDFGFEETADQKAAIHAVIQDMISPQPMDRLVCGDVGFGKTEVALRAAFVAVTGGR 673

Query: 323  QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            Q   +AP  +LA+QHY+ +        + V  ++          AL+ +A G   I++GT
Sbjct: 674  QVAFLAPTTLLAEQHYQTLVDRFSKWPVKVAEMSRFRSTKEINAALKGVADGSVDIVVGT 733

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L     ++  L L+I+DE+HRFGV+ +  +        VL +TATPIPRTL +   G 
Sbjct: 734  HKLLSADTKFKDLGLLIIDEEHRFGVRHKEAVKALRAEVDVLTLTATPIPRTLGMALEGL 793

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNF 500
             D+S I   P  R  IKT +      D+ + R  V+  L  G + Y++  ++E  +  N 
Sbjct: 794  RDLSVIATAPQRRLAIKTFV---RNEDKGVIREAVLRELKRGGQVYFLHNEVETIE--NR 848

Query: 501  RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            R+ +E    L E   + I + HG+M +   E+VM  F      LL+ +T+IE GIDV  A
Sbjct: 849  RARLEEL--LPE---ARIGVAHGQMPERQLEAVMRDFVAQRTNLLLCSTIIETGIDVPSA 903

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED-- 616
            + I+I  A+ FGLAQLHQLRGRVGR    +   L+      L+K +  RL  ++  E+  
Sbjct: 904  NTIVISRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDKESLTKQAAQRLDAIQAMEELG 963

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             GF +A  DL+ R  GE+LG  QSG    L    +L++ +L  A +  K    ++PDL +
Sbjct: 964  SGFYLAMHDLEIRGAGEVLGENQSG--NMLEVGFQLYNEMLSEAVRSLKE--GKEPDLLA 1019

Query: 676  VRGQSIRILLY 686
                +  I L+
Sbjct: 1020 PMSAATDINLH 1030


>gi|256820721|ref|YP_003142000.1| transcription-repair coupling factor [Capnocytophaga ochracea DSM
           7271]
 gi|256582304|gb|ACU93439.1| transcription-repair coupling factor [Capnocytophaga ochracea DSM
           7271]
          Length = 1109

 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 207/378 (54%), Gaps = 17/378 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  A  ++  DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P 
Sbjct: 550 YEDTPDQSKATAEVKADMESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPT 609

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH++   +  ++  + ++ +        ++  LE +A+GQ  IIIGTH +  + +
Sbjct: 610 TVLAFQHFQTFSQRMKDFPVRIDYLNRFRTAKEKKIILEELANGQLDIIIGTHQIVGEKV 669

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            Y  L L+IVDE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S I  
Sbjct: 670 AYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLSVINT 729

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R PI + ++P +  +E+I + ++  +  G + +++  ++E  +E     +++R   
Sbjct: 730 PPPNRYPIDSQVVPFS--EEIIRDGIRYEIQRGGQVFFMHNRVENIQE--VAGMIQRLLP 785

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 + +AI HG+M     E  M +F +G   +L+ATT+IE G+DV +A+ I I NA 
Sbjct: 786 -----DARVAIGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNAH 840

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNTED---GFLIAEE 623
           +FGL+ LHQ+RGRVGR  + + C  +  PPL   S  +  R+  +    D   G  IA +
Sbjct: 841 NFGLSDLHQMRGRVGRSNKKAFCYFI-TPPLVAMSDGARKRIEAIAQFSDLGSGLNIAMK 899

Query: 624 DLKQRKEGEILGIKQSGM 641
           DL+ R  G++LG +QSG 
Sbjct: 900 DLEIRGAGDLLGGEQSGF 917


>gi|192291316|ref|YP_001991921.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            TIE-1]
 gi|192285065|gb|ACF01446.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            TIE-1]
          Length = 1172

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 146/445 (32%), Positives = 237/445 (53%), Gaps = 22/445 (4%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +AG++  +   +  ++   +PI  + ++  +     P+  T+ Q +AI   L D+ +   
Sbjct: 586  IAGELIKVAAERHLREAPKLPI--QPQLYDEFCARFPYDETEDQLAAINAALGDLEKGTP 643

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA+QH +   +  +   + V 
Sbjct: 644  MDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTFTERFRGFPVNVG 703

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
              +  +      +  + IA G   I++GTHAL   SI++  L LVIVDE+  FGV  + K
Sbjct: 704  QASRLVSTKELSQVKKGIADGTLDIVVGTHALLGKSIKFKDLGLVIVDEEQHFGVTHKEK 763

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEV 471
            L Q  +  HVL ++ATPIPRTL L   G  D+S I   P  R  ++T + P +   I E 
Sbjct: 764  LKQLRSEVHVLTLSATPIPRTLQLAMTGVRDLSIIASPPVDRLAVRTFVAPHDPLMIREA 823

Query: 472  IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
            + R +     G +A+++ P+I++  E      V+ F  L +H     +A+ HG+M     
Sbjct: 824  LLRERY---RGGQAFYVVPRIDDLAE------VKDF--LDKHVPEMKVAVAHGQMPPAVI 872

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE-EI 589
            E +M +F +G   +L++TT++E G+D+ +A+ +I+  A+ FGLAQL+QLRGRVGR +   
Sbjct: 873  EDIMSAFYDGKFDILLSTTIVESGLDIPNANTLIVHRADMFGLAQLYQLRGRVGRSKLRA 932

Query: 590  SSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
             +   L    ++  +  RL VL++ E    GF +A  DL  R  G +LG +QSG  K + 
Sbjct: 933  YALFTLPQHNITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVG 992

Query: 647  AQPELHDSLLEIARKDAKHILTQDP 671
               EL+  +LE A  + K  +  +P
Sbjct: 993  F--ELYQQMLEEAITNLKAGIVDEP 1015


>gi|308066876|ref|YP_003868481.1| transcription-repair coupling factor (TRCF) [Paenibacillus polymyxa
           E681]
 gi|305856155|gb|ADM67943.1| Transcription-repair coupling factor (TRCF) [Paenibacillus polymyxa
           E681]
          Length = 1175

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 210/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  AI++I +DM Q   M R+L GDVG GKT VA+ A   +   G Q  ++ P
Sbjct: 610 PYDETRDQIRAIEEIKKDMEQSRPMDRLLCGDVGYGKTEVAIRAAFKSAIEGKQVAVLVP 669

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE  ++        +++++    +  + + ++ +  G   I+IGTH L    
Sbjct: 670 TTILAQQHYETFRERFSGYPFNIQVLSRFRTRKEQNETIKGVRQGTVDIVIGTHRLLSQD 729

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L ++IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 730 LVFKDLGMLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIE 789

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T ++  ++  + E IER    ++ G + Y++  +++       + +    
Sbjct: 790 TPPENRFPVQTYVVEHSQTLVREAIER---EMARGGQVYYLYNRVQ-----GIQEMAAEI 841

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           N+L     + + + HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +
Sbjct: 842 NALVP--GAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHD 899

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+QLRGRVGR   I+     Y     L++ +  RL  +K  TE   GF IA 
Sbjct: 900 ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAM 959

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G +LG +Q G
Sbjct: 960 RDLSIRGAGNLLGAEQHG 977


>gi|251772784|gb|EES53346.1| transcription-repair coupling factor [Leptospirillum
           ferrodiazotrophum]
          Length = 1145

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 138/417 (33%), Positives = 223/417 (53%), Gaps = 21/417 (5%)

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           E ++  + +L  R+  K   G   + E  + ++  ++ P+  T  QE AI+ +L DM   
Sbjct: 561 EKISADLVMLYARR--KAAEGFAFSPESILTREFDQSFPYDLTTDQEEAIQAVLSDMESP 618

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VA+ A   AV  G Q  ++ P  +LA QH+E  K       + 
Sbjct: 619 TPMDRLILGDVGFGKTEVAMRAAIRAVADGKQVAVLVPTTLLALQHHETFKNRFAGFPVR 678

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           +E ++  +  A ++   ER+  G+  I++GT AL  +++++  L L+I+DE+ RFGV+Q+
Sbjct: 679 IESLSRMVSPAEQKLVRERLRRGETDIVVGTTALLANAVEFRDLGLLIIDEEQRFGVRQK 738

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RID 469
             L  +      L ++ATPIPRTL +   G   IS I   P GRK IKT I+  +  RI 
Sbjct: 739 ENLASRFPNVDRLTLSATPIPRTLQMAMSGLKGISFIMTPPQGRKAIKTAIMRFDRERIR 798

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDI 528
           EVI+R    L+   + ++I  ++         S+      L   F  + +A  HG+M + 
Sbjct: 799 EVIDR---ELAREGQVFFIHNRVS--------SIARWARYLAALFPEAGVAYAHGQMGEE 847

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG-- 586
           + E+VM  F     ++L++TT++E G+D+  A+ I+I  A+ FG+A+L+QLRGRVGRG  
Sbjct: 848 EIEAVMGKFLRRESRILVSTTIVESGLDIPYANTILINRADMFGIAELYQLRGRVGRGGQ 907

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           +  +  I      L + +  RL  L        G+ IA  DL+ R  G +LG +Q+G
Sbjct: 908 QAYAYFITPSEEALGEVARKRLHTLTTHSGLGSGYQIAMRDLEIRGAGSLLGHQQTG 964


>gi|147676452|ref|YP_001210667.1| hypothetical protein PTH_0117 [Pelotomaculum thermopropionicum SI]
 gi|146272549|dbj|BAF58298.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 592

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 140/414 (33%), Positives = 227/414 (54%), Gaps = 19/414 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  A++++  DM +   M R+L GDVG GKT VAL A   AV  G Q  I+ P
Sbjct: 21  PYEETPDQLRAVEEVKADMERPRPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAILVP 80

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHY   ++      + +E+++       +R+ L+ +  G   I+IGTH L QD 
Sbjct: 81  TTILAQQHYTTFRERLARFPVNIEVLSRFRTAREQRQVLQGLEQGTVDIVIGTHRLLQDD 140

Query: 390 IQYYKLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           +++  L L++VDE+ RFGV  ++RLK+ +K     VL +TATPIPRTL ++ +G  D S 
Sbjct: 141 VRFKALGLLVVDEEQRFGVAHKERLKMIRKDV--DVLTLTATPIPRTLHMSLIGVRDTSI 198

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           +   P  R P++T ++  + +  + E ++  ++ G + +++  +I      +   V    
Sbjct: 199 LETPPEDRYPVQTYVLEEDPV-LIREAIRREMNRGGQVFFVYNRI-----MDLDQVALWL 252

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L     + IA+ HG+M + + E VM  F +    +L+ TT+IE G+D+ + + +++++
Sbjct: 253 QELVPE--ARIAVAHGQMKEDELEQVMLDFIDRRYDVLVCTTIIENGLDISNVNTLLVKD 310

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A   GLAQL+QLRGRVGR   ++     +     L + +  RL+ ++  TE   GF IA 
Sbjct: 311 ANMMGLAQLYQLRGRVGRSNRLAHAYFTFRKDRVLGEAAEKRLAAIREFTELGSGFKIAM 370

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            DL+ R  G ILG +Q G         +L+  LLE A ++A+ I T  P  TS+
Sbjct: 371 RDLEIRGAGNILGAEQHG--HIAAVGFDLYCRLLEEAIREARGIDTVQPVETSI 422


>gi|325335423|gb|ADZ11697.1| Transcription-repair coupling factor (superfamily II helicase)
           [Riemerella anatipestifer RA-GD]
          Length = 1097

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 133/414 (32%), Positives = 220/414 (53%), Gaps = 19/414 (4%)

Query: 237 QIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           QIA  L++   K++   G     +  +  ++  +  +  T  QE A  D+ +DM     M
Sbjct: 520 QIAFDLIKLYAKRKTAKGFAYTPDTYLQNELEASFLYEDTPDQEKATLDVKRDMEADTIM 579

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VA+ A   A   G Q  ++ P  ILA QHY    +  ++  + +  
Sbjct: 580 DRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVLVPTTILAFQHYRSFAERLKDFPVNISY 639

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +        +R+ LE++A G+  IIIGTH L  D +++  L L+I+DE+H+FGV  + KL
Sbjct: 640 LNRFRTAKQKRETLEKLAEGKIDIIIGTHQLASDKVKFKDLGLLIIDEEHKFGVSVKDKL 699

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-E 473
                    L +TATPIPRTL  + +   D+S I   P  R+P++T +I  +  +E+I +
Sbjct: 700 KTLKANIDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETQLIGFD--EEIIRD 757

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            +   L    + Y+I  +I+  K  +   +++R         + +   HG+M     E  
Sbjct: 758 AISYELQRDGQVYFINNRIDNLK--DIAGMIQRLVP-----DARVITGHGQMDGKQLEEN 810

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F  G   +L++TT++E G+DV +A+ I I +A+ FG+A +HQ+RGRVGR    + C 
Sbjct: 811 ILDFMEGRYDVLVSTTIVESGVDVPNANTIFINDAQRFGMADVHQMRGRVGRSNRKAFCY 870

Query: 594 LLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           L+  PP   ++ ++  RL  ++   D   GF IA +DL+ R  G++LG +QSG 
Sbjct: 871 LI-TPPFDMVTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLLGAEQSGF 923


>gi|120405727|ref|YP_955556.1| transcription-repair coupling factor [Mycobacterium vanbaalenii
            PYR-1]
 gi|119958545|gb|ABM15550.1| transcription-repair coupling factor [Mycobacterium vanbaalenii
            PYR-1]
          Length = 1212

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 126/377 (33%), Positives = 202/377 (53%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 643  FTETVDQLTAITEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 702

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH +          + V+ ++     A  R  +E +  G   I+IGTH L Q  +
Sbjct: 703  TLLADQHLQTFTNRMTGFPVTVKGLSRFTDPAESRATIEGMKDGSVDIVIGTHRLLQTGV 762

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L LVIVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 763  TWKDLGLVIVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 822

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T + P +   +V   L+  +    +A++I  ++   +   +  R +V    
Sbjct: 823  PPEERYPVLTYVGPHDD-KQVAAALRREMLRDGQAFYIHNRVRTIDSAAAKVRQLVPE-- 879

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + + + HG+M +   E  ++ F N    +L+ TT++E G+D+ +A+ +I+E A
Sbjct: 880  -------ARVVVAHGQMPEEQLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERA 932

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
            + FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +
Sbjct: 933  DTFGLSQLHQLRGRVGRSRERGYAYFLYPPEVPLTETAYDRLATIAQNNELGAGMAVAMK 992

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 993  DLEIRGAGNVLGAEQSG 1009


>gi|319794000|ref|YP_004155640.1| transcription-repair coupling factor [Variovorax paradoxus EPS]
 gi|315596463|gb|ADU37529.1| transcription-repair coupling factor [Variovorax paradoxus EPS]
          Length = 1160

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 147/412 (35%), Positives = 216/412 (52%), Gaps = 21/412 (5%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q++AI  ++QDM     M R++ GDVG GKT VAL A   A+  G Q   +AP 
Sbjct: 607  FQETADQKAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFIAITGGKQVAFLAPT 666

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QHY+ +        + V  ++          A + +A GQ  I++GTH L   S+
Sbjct: 667  TLLAEQHYQTLVDRFAKWPVKVAEMSRFRSAKEITAAAKGLAEGQIDIVVGTHKLLSQSV 726

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L L+I+DE+HRFGV+ +  +        VL +TATPIPRTL +   G  D+S I  
Sbjct: 727  KFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSVIAT 786

Query: 451  KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R  IKT +   N    VI E +   L  G + Y++  ++E        ++  R   
Sbjct: 787  APQRRLAIKTFV--RNEGTGVIREAVLRELKRGGQVYFLHNEVE--------TIENRRQK 836

Query: 510  LHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L E    + IA+ HG+M + + E VM  F      LL+ +T+IE GIDV  A+ I++  A
Sbjct: 837  LEEILPEARIAVAHGQMPERELERVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRA 896

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEE 623
            + FGLAQLHQLRGRVGR    +   L+      L+K +  RL  ++  E+   GF +A  
Sbjct: 897  DKFGLAQLHQLRGRVGRSHHQAYAYLMVPDTEGLTKQAAQRLDAIQQMEELGSGFYLAMH 956

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            DL+ R  GE+LG  QSG    +    +L++ +L  A +  K    Q+PDL S
Sbjct: 957  DLEIRGTGEVLGENQSG--NMMEIGFQLYNEMLSEAVRALK--AGQEPDLLS 1004


>gi|329850695|ref|ZP_08265540.1| transcription-repair coupling factor [Asticcacaulis biprosthecum C19]
 gi|328841010|gb|EGF90581.1| transcription-repair coupling factor [Asticcacaulis biprosthecum C19]
          Length = 1161

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 140/427 (32%), Positives = 228/427 (53%), Gaps = 24/427 (5%)

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            G  I+    +  +     P+  T  Q  AI+D+L+D+++   M R++ GDVG GKT VAL
Sbjct: 593  GAQIDPPSGLYDEFCAQFPYEETDDQLHAIQDVLEDLAKGQPMDRLICGDVGFGKTEVAL 652

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A      +G Q  I+ P  +LA+QH++   +  Q   + V  ++  + +    +  E +
Sbjct: 653  RAAFVVAMSGSQVAIVCPTTLLARQHFKTFTQRFQGWPVRVRQLSRLVGRKDADETREGL 712

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
              G+  I+IGTHAL  + + +  L LVIVDE+  FGV+ + KL       H++ ++ATPI
Sbjct: 713  KKGEIEIVIGTHALLSEQVSFKDLGLVIVDEEQHFGVKHKEKLKAFRADVHMMALSATPI 772

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWIC 489
            PRTL +   G  D+S I   P  R  ++T ++P + +   E + R K     G +AY++ 
Sbjct: 773  PRTLQMALSGIRDMSIIATPPVDRIAVRTYVLPYDPVALREALLREKY---RGGQAYYVV 829

Query: 490  PQIEEKKESNFRSVVE--RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            P++     S+   V +  R       F     I HG++S    E VM +F  G   +L++
Sbjct: 830  PRL-----SDLPDVADFLRVQVPEIRFV----IGHGQLSPTALEDVMTAFYEGQYDVLLS 880

Query: 548  TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSY 605
            TT++E G+DV  A+ +I+  A+ FGLAQL+Q+RGRVGR +  +   L    H  LS  S 
Sbjct: 881  TTIVESGLDVPTANTLIVHRADMFGLAQLYQIRGRVGRSKTRAFAYLTTPQHRTLSVASE 940

Query: 606  TRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFL---IAQPELHDSLLEIA 659
             RL VL++ ++   GF +A  DL  R  G +LG +QSG  + +   + Q  L D++ E+ 
Sbjct: 941  KRLKVLQSLDNLGAGFQLASHDLDIRGGGNLLGHEQSGHIREIGVELYQQMLEDAVAELR 1000

Query: 660  RKDAKHI 666
            +K  +++
Sbjct: 1001 QKSDENL 1007


>gi|330826160|ref|YP_004389463.1| transcription-repair coupling factor [Alicycliphilus denitrificans
           K601]
 gi|329311532|gb|AEB85947.1| transcription-repair coupling factor [Alicycliphilus denitrificans
           K601]
          Length = 1163

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 138/386 (35%), Positives = 202/386 (52%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++ + +  F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   AV  G 
Sbjct: 601 EQFVADFGFEETADQNAAIHAVVQDMISPRPMDRLVCGDVGFGKTEVALRACFVAVTGGK 660

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q   +AP  +LA+QHY  +        + V  ++          A++ IA G   I++GT
Sbjct: 661 QVAFLAPTTLLAEQHYRTLCDRFAKWPVKVAEVSRFRSGKEITAAVKGIADGTVDIVVGT 720

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L  +S ++  L L+I+DE+HRFGV+ +  + Q      VL +TATPIPRT+ +   G 
Sbjct: 721 HKLLSESTKFKNLGLLIIDEEHRFGVRHKEAMKQLRAEVDVLTLTATPIPRTMGMALEGL 780

Query: 443 IDISKITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D+S I   P  R  IKT +       I E + R    L  G + Y++  ++E       
Sbjct: 781 RDLSVIATAPQRRLAIKTFVRSEGTGVIREAVLR---ELKRGGQCYFLHNEVE------- 830

Query: 501 RSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            ++  R   L E    + IA+ HG+M + + E VM  F      +L+ +T+IE GIDV  
Sbjct: 831 -TIENRRQKLEEILPEARIAVAHGQMPERELEKVMRDFVAQRYNILLCSTIIETGIDVPS 889

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED- 616
           A+ I+I  A+ FGLAQLHQLRGRVGR    +   L+      L+K +  RL  ++  E+ 
Sbjct: 890 ANTILISRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDLDGLTKQAQQRLDAIQQMEEL 949

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 950 GSGFYLAMHDLEIRGAGEVLGENQSG 975


>gi|91788579|ref|YP_549531.1| transcription-repair coupling factor [Polaromonas sp. JS666]
 gi|91697804|gb|ABE44633.1| transcription-repair coupling factor [Polaromonas sp. JS666]
          Length = 1201

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 145/413 (35%), Positives = 215/413 (52%), Gaps = 23/413 (5%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   A+  G Q  ++AP 
Sbjct: 648  FEETADQRAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFIAITGGKQVALLAPT 707

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QHY+ +        + V  ++          A++ +A G   I++GTH L    +
Sbjct: 708  TLLAEQHYQTLVDRFAKWPVKVAEMSRFRSAREITAAIKGLADGSVDIVVGTHKLLSQDV 767

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++ +L L+I+DE+HRFGV+ +  +        VL +TATPIPRTL +   G  D+S I  
Sbjct: 768  KFQRLGLLIIDEEHRFGVRHKETMKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSVIAT 827

Query: 451  KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             P  R  IKT +   N   I E + R    L  G + Y++  ++E        ++  R  
Sbjct: 828  APQRRLAIKTFVRSENNGVIREAVLR---ELKRGGQVYFLHNEVE--------TIQNRRE 876

Query: 509  SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L E    + IA+ HG+M + + E VM  F      LL+ +T+IE GIDV  A+ I++  
Sbjct: 877  KLEEILPEARIAVAHGQMPERELERVMKDFVAQRYNLLLCSTIIETGIDVPSANTIVMSR 936

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622
            A+ FGLAQLHQLRGRVGR    +   L+      L+K +  RL  ++  E+   GF +A 
Sbjct: 937  ADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKQASQRLEAIQQMEELGSGFYLAM 996

Query: 623  EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             DL+ R  GE+LG  QSG    L    +L++ +L  A    K    ++PDL S
Sbjct: 997  HDLEIRGTGEVLGESQSG--NMLEVGFQLYNEMLSEAVASLK--AGREPDLLS 1045


>gi|88802028|ref|ZP_01117556.1| transcription-repair coupling factor [Polaribacter irgensii 23-P]
 gi|88782686|gb|EAR13863.1| transcription-repair coupling factor [Polaribacter irgensii 23-P]
          Length = 1114

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 141/432 (32%), Positives = 226/432 (52%), Gaps = 18/432 (4%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E G     +  I  ++  +  +  T  Q +A +D+ +DM +   M R++ GDVG GKT
Sbjct: 533 KLEKGFSFGPDSHIQHELEGSFIYEDTPDQFTATQDVKKDMEKAQPMDRLVCGDVGFGKT 592

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   AV+ G Q  I+ P  ILA QHY+   +  ++  + ++ +        +  A
Sbjct: 593 EVAIRAAFKAVDNGKQVAILVPTTILAFQHYKTFTERLKDFPLKIDYLNRFRTAKEKTAA 652

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           +E + +G   IIIGTH L    I++  L L+I+DE+ +FGV  + KL         L +T
Sbjct: 653 IEGVNNGSVDIIIGTHQLTNQRIKFKNLGLLIIDEEQKFGVAVKDKLKTLKENIDTLTLT 712

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL  + +   D+S I   P  R PI T +I  +  + + + +   +S G + ++
Sbjct: 713 ATPIPRTLQFSLMAARDLSIIKTAPPNRHPIDTNVIRFSE-ETIRDAISYEISRGGQIFF 771

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I  +IE  KE     +++R        ++ I I HG+M     E +M SF N    +L++
Sbjct: 772 IHNRIENIKE--VAGLLQRLVP-----SAKIGIGHGQMEGKKLEGLMLSFMNNEFDVLVS 824

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNS 604
           TT+IE G+DV +A+ I I NA +FGL+ LHQ+RGRVGR  + + C  +  PP   ++ ++
Sbjct: 825 TTIIESGLDVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFI-TPPYHVMTDDA 883

Query: 605 YTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEI 658
             R+  L    D   G  IA +DL+ R  G++LG +QSG      F   Q  L +++ E+
Sbjct: 884 RKRIEALVLFSDLGSGINIAMKDLEIRGAGDLLGGEQSGFINDIGFDTYQKILQEAIEEL 943

Query: 659 ARKDAKHILTQD 670
              + K +   D
Sbjct: 944 KENEFKDLYPTD 955


>gi|221370025|ref|YP_002521121.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           KD131]
 gi|221163077|gb|ACM04048.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           KD131]
          Length = 1059

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 132/390 (33%), Positives = 208/390 (53%), Gaps = 23/390 (5%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           I ++     PF+ +  Q  AI ++  D+     M R++ GDVG GKT +AL A AA   +
Sbjct: 519 IYERFAGRFPFTLSADQRRAIAEVRDDLVAGRPMNRLVLGDVGFGKTEIALRAAAAVALS 578

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q  ++AP  +LA+QH E  ++  +   + V  ++  +P    + A + +  G   I++
Sbjct: 579 GAQVALVAPSTVLARQHAETFRRRFEGFGVTVAHLSRLVPSKEAKAARDGLRDGSIRIVV 638

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTHAL    + +  L L+IVDE+ RFG   + +L       HVL MTATPIPRTL    +
Sbjct: 639 GTHALLGKGVAFADLGLLIVDEEQRFGAAHKARLRALGADLHVLTMTATPIPRTLQTALV 698

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEE--K 495
           G  D+S+I   PA R+ ++T+       D+     + +L E   G +++ I P+I E   
Sbjct: 699 GLQDLSEIATPPARRRAVRTLTAE----DDAAVLRQALLRERRRGGQSFVIVPRIAEIDA 754

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E+  R ++           + + + HG ++  + +  M  F  G   +L+AT+++E G+
Sbjct: 755 TEARLRDLLP---------EAQLRVAHGDLAPEELDRAMVEFAAGRGDILLATSIVETGL 805

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN 613
           DV  A+ +I+   + FGLAQLHQLRGRVGRG   + C L++ P   L + +  RL  L+ 
Sbjct: 806 DVPRANTMIVMQPQLFGLAQLHQLRGRVGRGARQAYCYLMHGPGDDLDEAALRRLGTLQA 865

Query: 614 TE---DGFLIAEEDLKQRKEGEILGIKQSG 640
            +    G  IA EDL QR  GE+ G +QSG
Sbjct: 866 FDRLGAGAAIAAEDLDQRGAGELFGERQSG 895


>gi|261417548|ref|YP_003251230.1| transcription-repair coupling factor [Geobacillus sp. Y412MC61]
 gi|319765205|ref|YP_004130706.1| transcription-repair coupling factor [Geobacillus sp. Y412MC52]
 gi|261374005|gb|ACX76748.1| transcription-repair coupling factor [Geobacillus sp. Y412MC61]
 gi|317110071|gb|ADU92563.1| transcription-repair coupling factor [Geobacillus sp. Y412MC52]
          Length = 1177

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 207/381 (54%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I++I +DM     M R+L GDVG GKT VAL A   A+  G Q   + P
Sbjct: 621 PYQETEDQLRSIEEIKRDMESDKPMDRLLCGDVGYGKTEVALRAAFKAIMDGKQVAFLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE +++  Q   I V ++     +  + + ++ +  G   ++IGTH L    
Sbjct: 681 TTILAQQHYETVRERFQGFPINVGLLNRFRTKKQQAEIIKGLKDGTIDMVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S I 
Sbjct: 741 VKFKDLGLLIIDEEQRFGVAHKEKIKQLKANIDVLTLTATPIPRTLHMSMIGVRDLSIIE 800

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNFRSVV 504
             P  R P++T ++      + E IER    L+   + +++   IE+   K E   + V 
Sbjct: 801 TPPENRFPVQTYVMEYTPELVKEAIER---ELARDGQVFFLYNHIEDIDLKAEEIAQLVP 857

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           E          + +  +HGRMS+ + ES + +F  G   +L+ TT+IE GID+ + + +I
Sbjct: 858 E----------ARVTYVHGRMSETELESTILAFLEGQYDVLVTTTIIETGIDIPNVNTLI 907

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619
           + +A+  GL+QL+QLRGRVGR   ++     Y     L++ +  RL  +K  TE   GF 
Sbjct: 908 VYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEAAEKRLQAIKEFTELGSGFK 967

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           IA  DL  R  G ILG +Q G
Sbjct: 968 IAMRDLSIRGAGNILGAEQHG 988


>gi|224069623|ref|XP_002303013.1| predicted protein [Populus trichocarpa]
 gi|222844739|gb|EEE82286.1| predicted protein [Populus trichocarpa]
          Length = 939

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 142/426 (33%), Positives = 228/426 (53%), Gaps = 63/426 (14%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            P+ PT  Q+ A  D+++D++++   M R++ GDVG GKT VAL A+   V AG QA+++
Sbjct: 262 FPYEPTPDQKQAFIDVMRDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 321

Query: 328 APIGILAQQHYEFI-KKYTQNTQIIVEIITGNMP------QAHRRKALERIAHGQAHIII 380
           AP  +LA+QH++ I +++++   I V +++          +A +   LE   HG   II+
Sbjct: 322 APTIVLARQHFDVISERFSKYPHIKVALLSRFQAYLLLQSKAEKEMYLEMTKHGHLDIIV 381

Query: 381 GTHALFQDSIQYYKLILVIVDEQH---------------------------RFGVQQRLK 413
           GTH+L    + Y  L L++VDE+                            RFGV+Q+ K
Sbjct: 382 GTHSLLGSRVVYNNLGLLVVDEEQTTNKRKGKGNFSINHDFANEKEKKESRRFGVKQKEK 441

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           +    T+  VL +TATPIPRTL L   G  D S I+  P  R PIKT +   ++ + +I 
Sbjct: 442 IASFKTSVDVLTLTATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSAYSK-ERLIS 500

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR-------- 524
            +K  L  G + +++ P+I+  +E      V+ F  L + F++  IA+ HG+        
Sbjct: 501 AIKYELDRGGQVFYVLPRIKGLEE------VKDF--LEQSFSNVEIAVAHGQHVTKKGNS 552

Query: 525 ---MSDIDK--ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              +    K  E  M+ F  G  K+LI T ++E G+D+ +A+ III++ + FGLAQL+QL
Sbjct: 553 FLLVKQYSKLLEDTMEQFAQGEIKILICTNIVESGLDIQNANTIIIQDVQLFGLAQLYQL 612

Query: 580 RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR ++ +   L Y     L+  +  RL+ L+  ++   GF +AE D+  R  G I 
Sbjct: 613 RGRVGRADKEAHAHLFYPDKSMLTDQALERLAALEECQELGRGFQLAERDMGIRGFGTIF 672

Query: 635 GIKQSG 640
           G +Q+G
Sbjct: 673 GEQQTG 678


>gi|162147670|ref|YP_001602131.1| transcription-repair coupling factor [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786247|emb|CAP55829.1| putatve transcription-repair coupling factor [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 1131

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 138/417 (33%), Positives = 216/417 (51%), Gaps = 25/417 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q  AI D+L+DM     M R++ GDVG GKT VAL A   A  +G Q  ++ P
Sbjct: 577 PFVETEDQSRAIADVLEDMGSGRPMDRLVCGDVGFGKTEVALRAAFVAALSGAQVAVVVP 636

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH+           I V  ++  +         + +A G  +I+IGTHAL    
Sbjct: 637 TTLLARQHFRTFSARFSGLPITVAQLSRMVTPKEATAVRKGLADGTINIVIGTHALLAKG 696

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +Q+  L L+I+DE+  FGV  + KL       HVL ++ATP+PRTL L   G  ++S I 
Sbjct: 697 VQFADLELLIIDEEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLALTGVREMSLIA 756

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  ++T I+P +   I E I+R +     G + + + P+IE+         ++R 
Sbjct: 757 TPPTDRLAVRTFIMPFDSVVIREAIQRERF---RGGQIFCVVPRIED---------LDRM 804

Query: 508 NSLHEHFTSSIAII--HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            +  +       ++  HGR++  + E VM  F +G   +L++T ++E G+D+   + +II
Sbjct: 805 AARLQDIVPDARLVQAHGRLTPTELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLII 864

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620
             A+ FGL QL+QLRGRVGRG++     L +     LS  +  RL V++  +    GF +
Sbjct: 865 HRADMFGLGQLYQLRGRVGRGKQRGYAYLTWPQTHVLSAAAEKRLEVMQTLDTLGAGFTL 924

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFL---IAQPELHDSLLEIARKDAKHILTQDPDLT 674
           A  DL  R  G +LG +QSG  + +   + Q  L D++ E+ R +      QD D T
Sbjct: 925 ASHDLDLRGAGNLLGDEQSGHIREVGIELYQQMLEDAVAEL-RVEKGRRKAQDRDWT 980


>gi|313207139|ref|YP_004046316.1| transcription-repair coupling factor [Riemerella anatipestifer DSM
           15868]
 gi|312446455|gb|ADQ82810.1| transcription-repair coupling factor [Riemerella anatipestifer DSM
           15868]
          Length = 1119

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 133/414 (32%), Positives = 220/414 (53%), Gaps = 19/414 (4%)

Query: 237 QIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           QIA  L++   K++   G     +  +  ++  +  +  T  QE A  D+ +DM     M
Sbjct: 520 QIAFDLIKLYAKRKTAKGFAYTPDTYLQNELEASFLYEDTPDQEKATLDVKRDMEADTIM 579

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VA+ A   A   G Q  ++ P  ILA QHY    +  ++  + +  
Sbjct: 580 DRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVLVPTTILAFQHYRSFAERLKDFPVNISY 639

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +        +R+ LE++A G+  IIIGTH L  D +++  L L+I+DE+H+FGV  + KL
Sbjct: 640 LNRFRTAKQKRETLEKLAEGKIDIIIGTHQLASDKVKFKDLGLLIIDEEHKFGVSVKDKL 699

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-E 473
                    L +TATPIPRTL  + +   D+S I   P  R+P++T +I  +  +E+I +
Sbjct: 700 KTLKANIDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETQLIGFD--EEIIRD 757

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            +   L    + Y+I  +I+  K+     +++R         + +   HG+M     E  
Sbjct: 758 AISYELQRDGQVYFINNRIDNLKD--IAGMIQRLVP-----DARVITGHGQMDGKQLEEN 810

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F  G   +L++TT++E G+DV +A+ I I +A+ FG+A +HQ+RGRVGR    + C 
Sbjct: 811 ILDFMEGRYDVLVSTTIVESGVDVPNANTIFINDAQRFGMADVHQMRGRVGRSNRKAFCY 870

Query: 594 LLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           L+  PP   ++ ++  RL  ++   D   GF IA +DL+ R  G++LG +QSG 
Sbjct: 871 LI-TPPFDMVTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLLGAEQSGF 923


>gi|307295470|ref|ZP_07575306.1| transcription-repair coupling factor [Sphingobium chlorophenolicum
           L-1]
 gi|306878509|gb|EFN09729.1| transcription-repair coupling factor [Sphingobium chlorophenolicum
           L-1]
          Length = 1157

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 138/401 (34%), Positives = 220/401 (54%), Gaps = 26/401 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q+ AI D+++D+     M R++ GDVG GKT VAL A   A  AG Q V++ P
Sbjct: 609 PYQETEDQDRAIMDVVEDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMAGMQVVVICP 668

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH+   ++  +   + +  ++   P    +     +A G   I++GTHAL    
Sbjct: 669 TTLLARQHHMNFEERFRGFPVNIGRLSRLAPDKEAKAVKAGLADGTVDIVVGTHALLAKG 728

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++ +L LVIVDE+ RFGV  + +L    T  HVL +TATPIPRTL +   G  ++S I 
Sbjct: 729 LEFKRLGLVIVDEEQRFGVTHKERLKSLKTDVHVLTLTATPIPRTLQMAMSGLRELSVIQ 788

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  ++T I+P    D V+ R + +L E   G +++++ P+I +  E      VE 
Sbjct: 789 TPPVDRLAVRTYIMP---WDGVVIR-EALLREHYRGGQSFFVVPRIADLTE------VEE 838

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F          I + HG+M+  + E  M +F +    +L++TT++E G+D+  A+ +II 
Sbjct: 839 FLRTEVPEVKPI-VAHGQMAASEVEERMSAFYDKRYDVLLSTTIVESGLDIPSANTLIIH 897

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFL 619
            A+ FGLAQL+QLRGRVGR +  +     +  P    +++ +  RL VL + +    GF 
Sbjct: 898 RADRFGLAQLYQLRGRVGRSK--TRAYAYFTTPANRVITETAEKRLKVLSDLDTLGAGFQ 955

Query: 620 IAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLE 657
           +A  DL  R  G ++G +QSG  K   F + Q  L D++LE
Sbjct: 956 LASHDLDIRGAGNLVGDEQSGHIKEVGFELYQSMLEDAILE 996


>gi|315022463|gb|EFT35490.1| transcription-repair coupling factor [Riemerella anatipestifer
           RA-YM]
          Length = 1096

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 133/414 (32%), Positives = 220/414 (53%), Gaps = 19/414 (4%)

Query: 237 QIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           QIA  L++   K++   G     +  +  ++  +  +  T  QE A  D+ +DM     M
Sbjct: 497 QIAFDLIKLYAKRKTAKGFAYTPDTYLQNELEASFLYEDTPDQEKATLDVKRDMEADTIM 556

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VA+ A   A   G Q  ++ P  ILA QHY    +  ++  + +  
Sbjct: 557 DRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVLVPTTILAFQHYRSFAERLKDFPVNISY 616

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +        +R+ LE++A G+  IIIGTH L  D +++  L L+I+DE+H+FGV  + KL
Sbjct: 617 LNRFRTAKQKRETLEKLAEGKIDIIIGTHQLASDKVKFKDLGLLIIDEEHKFGVSVKDKL 676

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-E 473
                    L +TATPIPRTL  + +   D+S I   P  R+P++T +I  +  +E+I +
Sbjct: 677 KTLKANIDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETQLIGFD--EEIIRD 734

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            +   L    + Y+I  +I+  K  +   +++R         + +   HG+M     E  
Sbjct: 735 AISYELQRDGQVYFINNRIDNLK--DIAGMIQRLVP-----DARVITGHGQMDGKQLEEN 787

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F  G   +L++TT++E G+DV +A+ I I +A+ FG+A +HQ+RGRVGR    + C 
Sbjct: 788 ILDFMEGRYDVLVSTTIVESGVDVPNANTIFINDAQRFGMADVHQMRGRVGRSNRKAFCY 847

Query: 594 LLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           L+  PP   ++ ++  RL  ++   D   GF IA +DL+ R  G++LG +QSG 
Sbjct: 848 LI-TPPFDMVTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLLGAEQSGF 900


>gi|15896463|ref|NP_349812.1| transcription-repair coupling factor [Clostridium acetobutylicum ATCC
            824]
 gi|15026288|gb|AAK81152.1|AE007817_6 Transcription-repair coupling factor, MFD (superfamily II helicase )
            [Clostridium acetobutylicum ATCC 824]
 gi|325510621|gb|ADZ22257.1| Transcription-repair coupling factor, MFD (superfamily II helicase )
            [Clostridium acetobutylicum EA 2018]
          Length = 1171

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 151/468 (32%), Positives = 239/468 (51%), Gaps = 27/468 (5%)

Query: 219  EWTSPARE-RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EWT    + R + +E+    + L  +R       G   + +    ++     P++ T+ Q
Sbjct: 574  EWTKAKNKVRKSINEIAEELVKLYAVRTTVN---GFKYSKDTVWQKQFEEEFPYNETQDQ 630

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              AI +I  DM     M R++ GDVG GKT VA+ A    V  G Q   + P  ILA+QH
Sbjct: 631  LLAIDEIKNDMESGKVMDRLICGDVGYGKTEVAIRAAFKTVMDGKQVAFLVPTTILAEQH 690

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y   KK  ++  + V++++    QA ++   + +  G   IIIGTH +    I +  L L
Sbjct: 691  YNNFKKRFKDFPVEVDMVSRFRSQAQQKATFKALKEGNIDIIIGTHRILNKEITFKDLGL 750

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +I+DE+ RFGV  + KL +      VL ++ATPIPRTL ++  G  DIS I   P  R P
Sbjct: 751  LIIDEEQRFGVSHKEKLKKFKKNIDVLTLSATPIPRTLHMSLTGVRDISVIETPPEERYP 810

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKE--SNFRSVVERFNSLHEH 513
            ++T ++  N  D++I R  ++   G+  + +++  ++E  KE  +N   ++         
Sbjct: 811  VQTYVVEYN--DQLI-RDAIMREIGRDGQVFFVYNKVESIKEMAANLGKLIPE------- 860

Query: 514  FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              + IAI HG+MS+ + E VM  F  G   +L+ TT+IE GID+ + + +II NA+  GL
Sbjct: 861  --ARIAIAHGQMSERELEKVMIDFMEGNYDILLCTTIIETGIDIQNVNTLIIYNADKMGL 918

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            +QL+QLRGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL+ R
Sbjct: 919  SQLYQLRGRVGRTNRMAYAYFTYKKDKILTEVAEKRLKAIKEFTQLGSGFKIAMRDLEIR 978

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
              G I+G  Q G         +L+  +LE   K+ K  +  +P  T+V
Sbjct: 979  GAGNIMGSAQHG--HMATIGYDLYCRMLEDTIKEIKGEIQNEPVETTV 1024


>gi|89068292|ref|ZP_01155702.1| transcription-repair coupling factor [Oceanicola granulosus
           HTCC2516]
 gi|89046209|gb|EAR52267.1| transcription-repair coupling factor [Oceanicola granulosus
           HTCC2516]
          Length = 1151

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 128/384 (33%), Positives = 212/384 (55%), Gaps = 15/384 (3%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++ L   P+  T  Q +AI+ +L+DM     M R++ GDVG GKT VA+ A   A  +G 
Sbjct: 591 EQFLARFPYQETDDQLAAIEQVLEDMEAGTPMDRLVCGDVGFGKTEVAMRAAFVAAMSGS 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++AP  +LA+QH +  K+  +   + V  ++  + Q    +    +A G   I++GT
Sbjct: 651 QVAVVAPTTLLARQHAQSFKERFRGFPLKVRALSRFVSQKEAAETRAGLASGDVDIVVGT 710

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           HAL    +++  L L+++DE+ RFGV  + +L +  T  HVL +TATPIPRTL L+  G 
Sbjct: 711 HALLSKQVKFRDLGLLVIDEEQRFGVGHKERLKRMRTDVHVLTLTATPIPRTLQLSLSGV 770

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
            ++S I   P  R  I+T +   + +  V E L      G + +++ P+I +  E+    
Sbjct: 771 RELSIIGTPPVDRLAIRTYVSEFDAV-TVREALLRERYRGGQCFFVVPRISDMAEA---- 825

Query: 503 VVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             E F  L E     S+   HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+
Sbjct: 826 --EAF--LREQVPEVSVVTAHGQMAAGELDDRMNAFYDGKFDVLLATTIVESGLDIPTAN 881

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED--- 616
            +I+  A+ +GL+QL+Q+RGRVGR +  +   +   P   L+  +  RL VL + +    
Sbjct: 882 TMIVWRADMYGLSQLYQIRGRVGRSKTRAYAYMTTKPRARLTDQAEKRLRVLASLDSLGA 941

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF +A +DL  R  G +LG +QSG
Sbjct: 942 GFTLASQDLDIRGAGNLLGEEQSG 965


>gi|327313943|ref|YP_004329380.1| transcription-repair coupling factor [Prevotella denticola F0289]
 gi|326946335|gb|AEA22220.1| transcription-repair coupling factor [Prevotella denticola F0289]
          Length = 1175

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 134/401 (33%), Positives = 217/401 (54%), Gaps = 17/401 (4%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++E G   + +  +  ++  +  +  T  Q  A +++ QDM     M R++ GDVG GKT
Sbjct: 580 RREKGFAFSPDSFMQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKT 639

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A     Q  ++ P  +LA QHY+  KK  ++  + V+ ++        R+ 
Sbjct: 640 EVAIRAAFKAAADNKQVAVLVPTTVLAFQHYQTFKKRLKDMPVRVDYLSRARSARQTRQV 699

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  +A G+ +I++GTH L   S+++  L L+I+DE+ +FGV  + KL Q  T    L M+
Sbjct: 700 LADLAEGKINILVGTHKLIGKSVKWNDLGLLIIDEEQKFGVSTKEKLRQLKTNVDTLTMS 759

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486
           ATPIPRTL  + +G  D+S +   P  R PI+T I   +   EVI + +   +S   + Y
Sbjct: 760 ATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIATFSH--EVIADAINFEMSRNGQVY 817

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++  +I     SN + +    N + ++     +AI HG+M   + E ++  F N    +L
Sbjct: 818 FVNDRI-----SNLQEIA---NLIRKYVPDCRVAIGHGQMKPEELEKIVMGFMNYDYDVL 869

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKN 603
           ++TT++E GID+ +A+ III +A  FGL+ LHQ+RGRVGR  + + C LL  P   L+  
Sbjct: 870 LSTTIVENGIDISNANTIIINDAHRFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNTE 929

Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           +  RL  L+   D   GF +A +DL  R  G +LG +QSG 
Sbjct: 930 ARRRLEALETFSDLGSGFNLAMQDLDIRGAGNLLGSEQSGF 970


>gi|229496199|ref|ZP_04389919.1| transcription-repair coupling factor [Porphyromonas endodontalis
           ATCC 35406]
 gi|229316777|gb|EEN82690.1| transcription-repair coupling factor [Porphyromonas endodontalis
           ATCC 35406]
          Length = 1123

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 15/396 (3%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   + +  +  ++  +  +  T  Q  A++ + QDM Q   M R++ GDVG GKT +A+
Sbjct: 545 GFAFSPDSYLQHELEASFIYEETPDQLKAMEAVKQDMEQPRPMDRLICGDVGFGKTEIAI 604

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV    Q  ++ P  ILA QHY    +  ++  + V   +        ++ LE +
Sbjct: 605 RAAFKAVADSKQVAVLVPTTILAYQHYRTFSERLKDLPVRVAYFSRAQSAKESKQLLEDL 664

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G+  I++GTH L   ++Q+  L L+++DE+ +FGV  + KL         L M+ATPI
Sbjct: 665 KEGKIDIVVGTHRLVGKNVQFKDLGLLVIDEEQKFGVAVKEKLRSLQVNVDTLTMSATPI 724

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL  + +G  D+S I   P  R P+ T +I  +  + + E +   LS   + +++  +
Sbjct: 725 PRTLQFSLMGTRDLSNILTPPRNRYPVATEVIRFDP-EAIAEAINFELSRNGQVFFVHNR 783

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           I++  E   R + +R           IA+ HGRM+  + E +  SF      +L++TT++
Sbjct: 784 IDD-IEGIARMIQQRIPDCR------IAVGHGRMNQTELEQLFVSFSQHEFDVLVSTTIV 836

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRL 608
           E GIDV +A+ III++A HFGL+ LHQLRGRVGR    + C L+  PP   L + S  RL
Sbjct: 837 ENGIDVSNANTIIIDSAHHFGLSDLHQLRGRVGRSSRKAFCYLIT-PPMDLLPEASQRRL 895

Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             +++  D   G  IA +DL  R  G + G +QSG 
Sbjct: 896 RAIESYSDLGSGIRIAMQDLDIRGAGNVFGSEQSGF 931


>gi|331003610|ref|ZP_08327106.1| hypothetical protein HMPREF0491_01968 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412330|gb|EGG91722.1| hypothetical protein HMPREF0491_01968 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 583

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 211/375 (56%), Gaps = 19/375 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  AI+D  +D+     M R++ GDVG GKT +AL      ++ G Q + + P  IL
Sbjct: 39  TYDQLKAIEDAKRDLETGKIMDRLICGDVGYGKTEIALRTAFKVIQEGYQVLYLVPTTIL 98

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QHY    +  ++  + + +++    +  + K +E +  G   I+IGTH L    +   
Sbjct: 99  ARQHYNTFIQRMKDFPVKIALLSRFNTKKEQTKTIEDLEKGLVDIVIGTHRLLSKDVLPK 158

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           KL LVIVDE+ RFGV+ + KL Q     +VL +TATPIPRTL ++  G  D+S + E P 
Sbjct: 159 KLGLVIVDEEQRFGVRHKEKLKQLCENVNVLTLTATPIPRTLHMSLSGIRDLSVLEEPPV 218

Query: 454 GRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSL 510
            RKPI+T ++  +  DE + E ++  ++ G + Y++  ++   E+  ++ R+++   N  
Sbjct: 219 DRKPIQTYVMEYH--DETVKEAIRREVARGGQVYYLYNRVNNIEEVAAHVRALLPDIN-- 274

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  +  +HGRM +   E+ M  F NG   +L+ TT++E G+DV +A+ II+ +A+ 
Sbjct: 275 -------VEYVHGRMDERHLEARMVDFINGDVDVLVTTTIVETGLDVPNANTIIVHDADR 327

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDL 625
            GL+QL+QLRGRVGR +  +   L+Y  +  LS+ +  RL  ++  TE   G  IA  DL
Sbjct: 328 LGLSQLYQLRGRVGRSKRSAYAFLMYTRNKLLSEEASKRLKAIREFTELGSGIKIAMRDL 387

Query: 626 KQRKEGEILGIKQSG 640
           + R  G +LG+ Q G
Sbjct: 388 EIRGAGNVLGVTQHG 402


>gi|255281409|ref|ZP_05345964.1| transcription-repair coupling factor [Bryantella formatexigens DSM
           14469]
 gi|255267897|gb|EET61102.1| transcription-repair coupling factor [Bryantella formatexigens DSM
           14469]
          Length = 1179

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 209/373 (56%), Gaps = 15/373 (4%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q +AI+   +DM     M R++ GDVG GKT +A+ A   AV+ G Q V + P  IL
Sbjct: 627 TDDQLAAIEATKRDMESTKIMDRLICGDVGFGKTEIAIRAAFKAVQEGKQVVYLVPTTIL 686

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY    +  ++  + V+++      A ++K L  +  G   I+IGTH +    ++Y 
Sbjct: 687 AQQHYNTFVQRMKDFPVRVDLLCRFRTPAEQKKTLVDLKKGLVDILIGTHRVLSKDVEYK 746

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  D+S + E P 
Sbjct: 747 DLGLLVIDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPM 806

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R  I+T ++  N  + V E +   L+ G + Y++  ++         ++VE  N + + 
Sbjct: 807 ERTAIQTYVMEYNE-EMVREAISRELARGGQVYYVYNRV--------NTIVEMTNKIAKL 857

Query: 514 F-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +++A  HG+M + + E +M  F NG   +L++TT+IE G+D+ + + +II +A+  G
Sbjct: 858 LPEANVAFAHGQMKERELERIMYDFINGDIDVLVSTTIIETGLDISNVNTMIIHDADTMG 917

Query: 573 LAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQ 627
           L+QL+QLRGRVGR    +   L+Y  +  L + +  RL  ++  TE   G  IA  DL+ 
Sbjct: 918 LSQLYQLRGRVGRSNRTAYAFLMYRRNKMLKEVAEKRLHAIREFTELGSGIKIAMRDLEI 977

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +Q G
Sbjct: 978 RGAGNLLGAEQHG 990


>gi|221067482|ref|ZP_03543587.1| transcription-repair coupling factor [Comamonas testosteroni KF-1]
 gi|220712505|gb|EED67873.1| transcription-repair coupling factor [Comamonas testosteroni KF-1]
          Length = 1163

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 150/431 (34%), Positives = 222/431 (51%), Gaps = 21/431 (4%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            ++ + +  F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   A   G 
Sbjct: 601  EQFVADFGFEETADQRAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFVAAMGGK 660

Query: 323  QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            Q   +AP  +LA+QHY+ +        I V  ++          A++ I+ G   I++GT
Sbjct: 661  QVAFLAPTTLLAEQHYQTLVDRFSKWPIKVAEVSRFRSGKEITAAIKGISDGTVDIVVGT 720

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L  +S Q+  L L+I+DE+HRFGV+ +  +        VL +TATPIPRT+ +   G 
Sbjct: 721  HKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTMGMALEGL 780

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D+S I   P  R  IKT +   N    VI E +   L  G + Y++  ++E        
Sbjct: 781  RDLSVIATAPQRRLAIKTFV--RNEGTGVIREAVLRELKRGGQIYFLHNEVE-------- 830

Query: 502  SVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            ++  R   L E    + IA+ HG+M + + E VM  F      +L+ +T+IE GIDV  A
Sbjct: 831  TIENRKQKLEEILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPSA 890

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED-- 616
            + I+I  A+ FGLAQLHQLRGRVGR    +   L+      L+K +  RL  ++  E+  
Sbjct: 891  NTILISRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDLDGLTKQAQQRLEAIQQMEELG 950

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             GF +A  DL+ R  GE+LG  QSG    L    +L++ +L  A +  K    ++PDL S
Sbjct: 951  SGFYLAMHDLEIRGAGEVLGENQSG--NMLEVGFQLYNEMLSEAVRSLK--AGKEPDLLS 1006

Query: 676  VRGQSIRILLY 686
                S  I L+
Sbjct: 1007 PLSASTDINLH 1017


>gi|332295132|ref|YP_004437055.1| transcription-repair coupling factor [Thermodesulfobium narugense
           DSM 14796]
 gi|332178235|gb|AEE13924.1| transcription-repair coupling factor [Thermodesulfobium narugense
           DSM 14796]
          Length = 1111

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 137/432 (31%), Positives = 229/432 (53%), Gaps = 22/432 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ----KILRNIPFSPT 274
           +WTS  +    + E +A +I  +   +  ++ +  PI    K       ++  +  +  T
Sbjct: 530 DWTSKKKRAKDFAEKIAHEIVFI---EASRRNVQRPIYSNSKNPTIEELELKESFGYEET 586

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             QE AI+D+  DMS+   M R++  D G GKT +A+ A   AV A  Q  ++AP  +LA
Sbjct: 587 PDQERAIEDVFIDMSKPYPMDRLIVADAGFGKTEIAIRAAYRAVLASRQVALLAPTTLLA 646

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            QHY   K       + VE+++      ++ K LE +   +  IIIGTH+L    I++  
Sbjct: 647 DQHYRTFKNRFDPLGVRVEVLSRISRSGNKNKILEDLKENKIDIIIGTHSLLSKGIKFKN 706

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+ +FGV Q+ +  +  T   VL ++ATPIPRTL +   G  DIS I   P  
Sbjct: 707 LGLLIIDEEQKFGVMQKEQFKKLRTELDVLSLSATPIPRTLNMALSGLRDISTIFTPPKN 766

Query: 455 RKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           R PI+T++ P    D ++ E +   L  G + + +  +I     SN  ++ E+  S+  +
Sbjct: 767 RMPIRTIVSPFK--DTIVREAILRELDRGGQIFVVDARI-----SNLNNLKEKIESIVGN 819

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S A++HG+ S  +  + ++ F N    LLI+T ++E G+D+ + + III NA+ FGL
Sbjct: 820 V--SCAVLHGQKSPQEISTTLERFLNKEIDLLISTAILESGLDIPEVNTIIINNADLFGL 877

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           ++L+QLRGRVGR  +      LY     +++++  RL  ++       GF I+ +D++ R
Sbjct: 878 SELYQLRGRVGRSFKQGYAYFLYSSDKKITEDAKRRLQTIQMNSALVSGFNISLKDMEIR 937

Query: 629 KEGEILGIKQSG 640
             G +LG +Q G
Sbjct: 938 GTGNVLGTEQHG 949


>gi|331268338|ref|YP_004394830.1| transcription-repair coupling factor [Clostridium botulinum
           BKT015925]
 gi|329124888|gb|AEB74833.1| transcription-repair coupling factor [Clostridium botulinum
           BKT015925]
          Length = 1169

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 135/378 (35%), Positives = 204/378 (53%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AI++I  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P
Sbjct: 622 PYDETPDQLTAIQEIKADMESGKAMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVP 681

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY  + +   +  I +E+I+     A  +  L  +  G   ++IGTH + Q  
Sbjct: 682 TTILAEQHYTNLVQRFCDFPINIEMISRFKTSAQVKNILNEVKLGNVDVLIGTHRILQKD 741

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+IVDE+ RFGV  + K+        VL +TATPIPRTL ++  G  DIS I 
Sbjct: 742 VAFKDLGLLIVDEEQRFGVTHKEKIKNLKKNVDVLTLTATPIPRTLHMSLTGIRDISVIE 801

Query: 450 EKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             P  R P++T ++  N  D++IE  +   L    + Y++  ++         S+ E   
Sbjct: 802 TPPEERYPVQTYVVEFN--DQLIEDAIARELDRDGQVYFVYNRV--------GSIKEMAA 851

Query: 509 SLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            L + F  S + I HG+M + + E VM  F      +L+ TT+IE G+D+ +A+ +II +
Sbjct: 852 YLAKMFPDSKVGIAHGQMPERELEKVMYDFMKKEYDILVCTTIIETGLDIQNANTMIIYD 911

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           ++ FGL+QL+QLRGRVGR   ++   L Y     L++ +  RL  +K+ TE   GF IA 
Sbjct: 912 SDKFGLSQLYQLRGRVGRTNRMAYAYLTYKKDKVLTEVAEKRLKAIKDFTELGSGFKIAM 971

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G ++G  Q G
Sbjct: 972 RDLEIRGAGNLIGAAQHG 989


>gi|221217955|ref|ZP_03589422.1| transcription-repair coupling factor [Borrelia burgdorferi 72a]
 gi|221192261|gb|EEE18481.1| transcription-repair coupling factor [Borrelia burgdorferi 72a]
          Length = 1125

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 209/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P
Sbjct: 580 PYDETPDQIRAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE      ++++ER 
Sbjct: 760 IPPQNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERL 814

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III N
Sbjct: 815 TPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINN 869

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA 
Sbjct: 870 ANKFGLAQLYQLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAM 929

Query: 623 EDLKQRKEGEILGIKQSG 640
           +D++ R  G +LG +Q G
Sbjct: 930 KDMEIRGVGNLLGREQHG 947


>gi|307942228|ref|ZP_07657579.1| transcription-repair coupling factor [Roseibium sp. TrichSKD4]
 gi|307774514|gb|EFO33724.1| transcription-repair coupling factor [Roseibium sp. TrichSKD4]
          Length = 1162

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 134/401 (33%), Positives = 220/401 (54%), Gaps = 27/401 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AI  +  D++    M R++ GDVG GKT VAL A   A  +G Q  ++ P
Sbjct: 613 PYDETDDQLTAIDSVFDDLASGRPMERLVCGDVGFGKTEVALRAAFIAAMSGRQVAVVVP 672

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +L++QH++   +      I V   +  +P     K  + +A G   I++GTHAL   +
Sbjct: 673 TTLLSRQHFKTFSERFHGLPINVAHASRLVPTRELTKTKKGVADGTVDIVVGTHALLGKT 732

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +Q+  L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S I 
Sbjct: 733 VQFRDLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLIA 792

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  ++T + P    D ++ R + +L E   G +++++CP++ +        + +R
Sbjct: 793 TPPVDRLAVRTFVSP---FDPLVVR-EALLREHYRGGQSFYVCPRLAD--------LADR 840

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              L E      +A+ HG+M   + E VM++F  G   +L++TT++E G+D+  A+ +I+
Sbjct: 841 KQFLEEQVPELKVAVAHGQMPPSELEDVMNAFYEGKYNVLLSTTIVESGLDIPTANTLIV 900

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK----NSYTRLSVLKNTED---GF 618
             A+ FGL+QL+QLRGRVGR +  +    L+  P +K     +  RL VL++ E    GF
Sbjct: 901 HRADMFGLSQLYQLRGRVGRSK--TRAYALFTVPANKKLTVTAERRLKVLQSLETLGAGF 958

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +A  DL  R  G +LG +QSG  K +    EL+  +LE A
Sbjct: 959 QLASHDLDIRGAGNLLGEEQSGHVKEV--GFELYQQMLEEA 997


>gi|168702194|ref|ZP_02734471.1| transcription-repair coupling factor [Gemmata obscuriglobus UQM 2246]
          Length = 1121

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 142/440 (32%), Positives = 226/440 (51%), Gaps = 38/440 (8%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q SAI ++  D+ +   M R++ GDVG GKT VA+ A   AV++G Q  ++ P
Sbjct: 580  PYQETPDQLSAIAEVKGDLEKTKPMDRLICGDVGYGKTEVAIRAAFKAVDSGKQVAVLVP 639

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QH+    +       +V+ +      A +++ L+++A G+  +I+GTH L    
Sbjct: 640  TTVLAEQHFRTFTQRFAEYPFMVDAVNRFKSGAKQKETLKKLAAGEVDVIVGTHRLLSKD 699

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L LV++DE+ RFGV+ + +L        VL MTATPIPRTL  + LG  +IS + 
Sbjct: 700  VTFKDLGLVVIDEEQRFGVEHKERLKHLRATVDVLTMTATPIPRTLHASLLGIREISNLE 759

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERF 507
              PA R+P++T    I R D+   R  ++  ++ G + Y++  ++++  E     V  + 
Sbjct: 760  TPPADRQPVET---HITRWDDKQLRNAILREMNRGGQVYFVHNRVQDIYE-----VATKI 811

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              L     + + + HG+M   D E  M  F      +L+ATT+IE G+D+ +A+ I I+ 
Sbjct: 812  EILVPE--AKVTVGHGQMDAHDLEKAMVRFVRKEADILVATTIIESGLDIPNANTIFIDE 869

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHP-----PLSKNSYTRLSVLKNTEDGFLIAE 622
            A+ +GLA LHQLRGRVGR +  +    + +P     P ++     +        GF IA 
Sbjct: 870  ADTYGLADLHQLRGRVGRSKHRAYAYFIVNPLKLLNPTAQRRLKAIEEFTELGAGFKIAM 929

Query: 623  EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT-------- 674
             DL+ R  G ILG +QSG         EL+  LLE A +  KH   Q P +         
Sbjct: 930  RDLEIRGAGNILGGEQSG--HIAAIGYELYCQLLENAVRALKH---QPPKVAVDVVVDLP 984

Query: 675  --------SVRGQSIRILLY 686
                     V+GQ +RI +Y
Sbjct: 985  WPSYLPRDYVQGQKLRIEVY 1004


>gi|219559003|ref|ZP_03538079.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis T17]
          Length = 318

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 111/263 (42%), Positives = 168/263 (63%), Gaps = 16/263 (6%)

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            L +V+VDEQHRFGV+QR +L  KA A   PH+L+MTATPIPRT+ LT  GD++ S + E
Sbjct: 1   NLGMVVVDEQHRFGVEQRDQLRAKAPAGITPHLLVMTATPIPRTVALTVYGDLETSTLRE 60

Query: 451 KPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            P GR+PI T +I +      +D    R+    + G++AY + P+I+E  +++ +  V  
Sbjct: 61  LPLGRQPIATNVIFVKDKPAWLDRAWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGVRP 120

Query: 507 FNSLHEHFTS---------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             +    F+           +A++HGR+S  DK++ M +F+ G   +L+ TTVIEVG+DV
Sbjct: 121 SATAEGLFSRLRSAELAELRLALMHGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDV 180

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            +A+++++ +A+ FG++QLHQLRGR+GRGE  S C+L    P    +  RL  +  T DG
Sbjct: 181 PNATVMLVMDADRFGISQLHQLRGRIGRGEHPSVCLLASWVPPDTPAGQRLRAVAGTMDG 240

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A+ DLK+RKEG++LG  QSG
Sbjct: 241 FALADLDLKERKEGDVLGRNQSG 263


>gi|225549983|ref|ZP_03770944.1| transcription-repair coupling factor [Borrelia burgdorferi 118a]
 gi|225369442|gb|EEG98894.1| transcription-repair coupling factor [Borrelia burgdorferi 118a]
          Length = 1125

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 209/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P
Sbjct: 580 PYDETPDQIRAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE      ++++ER 
Sbjct: 760 IPPQNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERL 814

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III N
Sbjct: 815 TPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINN 869

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA 
Sbjct: 870 ANKFGLAQLYQLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAM 929

Query: 623 EDLKQRKEGEILGIKQSG 640
           +D++ R  G +LG +Q G
Sbjct: 930 KDMEIRGVGNLLGREQHG 947


>gi|78189837|ref|YP_380175.1| transcription-repair coupling factor [Chlorobium chlorochromatii
           CaD3]
 gi|78172036|gb|ABB29132.1| Transcription-repair coupling factor [Chlorobium chlorochromatii
           CaD3]
          Length = 1099

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 141/429 (32%), Positives = 231/429 (53%), Gaps = 23/429 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q  AI D+ +DM   + M R++ GD G GKT +A+ +   AVE+  QA ++ P 
Sbjct: 521 FDETPDQLRAINDVKKDMQASHPMDRLICGDAGFGKTEIAMRSAFKAVESKKQAAVLTPT 580

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH +   +   N  I + +++  + +  +   L++I  G+  I+IGTH L    +
Sbjct: 581 TILAHQHADSFTRRFANFPISIAVLSRFVSRKEQLSLLKKIEEGKIDIVIGTHRLVSKDV 640

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+++DE+  FGV+ + KL ++      L M+ATPIPRTL  + LG  D+S ++ 
Sbjct: 641 HFKDLGLLVIDEEQHFGVEVKEKLREQFPTIDTLTMSATPIPRTLQFSMLGARDLSIVST 700

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R+P++T+I   +   I   I+R    L    + +++  +I     +   ++ E   
Sbjct: 701 PPKNRQPVETIITDFDAALIQSAIQR---ELQREGQVFFLHNRI-----AGLETIAE--- 749

Query: 509 SLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           SL E   S+ I   HG+M   + E +M  F      +LI+TT+I  G+D+ +A+ III  
Sbjct: 750 SLRELVPSARIVYAHGQMPTRELEKIMMDFMQQEVDVLISTTIIGSGLDISNANTIIINR 809

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+ FGL+ L+QLRGRVGR E  + C L+  P   L K++  RL+V+++ TE   GF IA 
Sbjct: 810 ADLFGLSDLYQLRGRVGRSERKAYCYLITPPMKTLKKDALQRLAVIESFTELGSGFNIAL 869

Query: 623 EDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
            DL  R  G +LG +QSG      F + Q  L +++ E+   +  H+  ++ +   +R Q
Sbjct: 870 RDLDIRGAGNLLGAEQSGYIHELGFDLYQKMLEETVAELKTNEFSHMFEEEGN-KPLRQQ 928

Query: 680 SIRILLYLY 688
               LL+ +
Sbjct: 929 KPCDLLFFF 937


>gi|119356706|ref|YP_911350.1| transcription-repair coupling factor [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354055|gb|ABL64926.1| transcription-repair coupling factor [Chlorobium phaeobacteroides
           DSM 266]
          Length = 1127

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 209/379 (55%), Gaps = 19/379 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q  AI+++ +DM   + M R++ GD G GKT +A+ A   AVE+  Q  I+ P 
Sbjct: 551 FDETPDQLKAIEEVKKDMQASHPMDRLICGDAGFGKTEIAMRAAFKAVESKKQVAILTPT 610

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH E   +  +N  I + +++  + +  + K +E+I  GQ  I+IGTH L    +
Sbjct: 611 TILAHQHGESFTRRFENFPISIAVLSRFVARKDQEKIIEKIKAGQIDIVIGTHRLVSKDV 670

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+++DE+  FGV+ + KL         L M+ATPIPRTL  + LG  D+S ++ 
Sbjct: 671 LFKDLGLLVIDEEQHFGVEVKEKLRDSFPGVDSLTMSATPIPRTLQFSMLGARDLSIVST 730

Query: 451 KPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
            P  R+P++T++   +    +I+  ++  L    + +++  +I   E+ +   R +V   
Sbjct: 731 PPKNRQPVETILTGYDPT--IIQSAIRHELQRDGQVFFLHNRISGLEEVQQTLRDLVPY- 787

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + I I HG+M   + E VM  F      +LI+T++I  G+D+ +A+ III  
Sbjct: 788 --------ARIVIAHGQMPSKELEKVMMDFMQKEIDVLISTSIISSGLDISNANTIIINR 839

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+ FGL+ L+QLRGRVGR E  +SC ++  P   L K +  RL+V+++ TE   GF IA 
Sbjct: 840 ADMFGLSDLYQLRGRVGRSERKASCYMITPPLNTLKKEAVQRLAVIESFTELGSGFTIAL 899

Query: 623 EDLKQRKEGEILGIKQSGM 641
            DL  R  G +LG +QSG 
Sbjct: 900 RDLDIRGAGNLLGAEQSGF 918


>gi|319934923|ref|ZP_08009368.1| transcription-repair coupling factor [Coprobacillus sp. 29_1]
 gi|319810300|gb|EFW06662.1| transcription-repair coupling factor [Coprobacillus sp. 29_1]
          Length = 1141

 Score =  206 bits (525), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 139/430 (32%), Positives = 224/430 (52%), Gaps = 21/430 (4%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  +  R R   D+L    I L   R    K+ G     +  +  +      +  T  Q
Sbjct: 548 EWQKTKQRVRKKVDDLADKLIELYAARM---KQAGFAYPKDDALQIQFEECFGYELTPDQ 604

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           + A+K+I  DM     M R+L GDVG GKT VAL A   A+ A  Q   + P  IL+ QH
Sbjct: 605 QEAVKEIKADMELPRPMDRLLCGDVGFGKTEVALRACFKAILANKQVAFLCPTTILSAQH 664

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y  + K  +N  + + ++        ++   E + +G+  +++GTH +    + +  L L
Sbjct: 665 YHTMIKRFENFPVRIALLNRFTTLKQKKVIFEDLKNGKIDLLVGTHRILSKDVVFKDLGL 724

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           + +DE+ RFGV+Q+ ++ Q      VL +TATPIPRTL ++ +G   +S+I   P  R P
Sbjct: 725 LCIDEEQRFGVRQKEQIKQLRETIDVLTLTATPIPRTLQMSLMGIRGLSQIETPPLNRLP 784

Query: 458 IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           ++T ++  +   I +VIER    L    + +++       K SN  SV      +     
Sbjct: 785 VQTYVMEKSEQLIKQVIER---ELGRKGQVFYLY-----NKTSNIESVANHIARMVPE-- 834

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + + I HG+M+    E VM +F +    +L+ TT+IE GID+ +A+ IIIE+A+ FGL+Q
Sbjct: 835 AKVGIGHGKMNKEQLEDVMQAFVDKEYDVLVCTTIIETGIDIPNANTIIIEDADRFGLSQ 894

Query: 576 LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
           L+Q++GRVGR E ++   LLY  +  +++ +  RL  +K       G+ IA  DL  R  
Sbjct: 895 LYQIKGRVGRSERVAYAYLLYAKNKQMNEEASKRLKAIKEFAQLGSGYKIAMRDLSIRGS 954

Query: 631 GEILGIKQSG 640
           G+ILG +Q+G
Sbjct: 955 GDILGGEQAG 964


>gi|225548852|ref|ZP_03769829.1| transcription-repair coupling factor [Borrelia burgdorferi 94a]
 gi|225370455|gb|EEG99891.1| transcription-repair coupling factor [Borrelia burgdorferi 94a]
          Length = 1125

 Score =  206 bits (525), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 209/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P
Sbjct: 580 PYDETPDQIRAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE      ++++ER 
Sbjct: 760 IPPQNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERL 814

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III N
Sbjct: 815 TPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINN 869

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA 
Sbjct: 870 ANKFGLAQLYQLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAM 929

Query: 623 EDLKQRKEGEILGIKQSG 640
           +D++ R  G +LG +Q G
Sbjct: 930 KDMEIRGVGNLLGREQHG 947


>gi|124007360|ref|ZP_01692067.1| transcription-repair coupling factor [Microscilla marina ATCC
           23134]
 gi|123987193|gb|EAY26933.1| transcription-repair coupling factor [Microscilla marina ATCC
           23134]
          Length = 1137

 Score =  206 bits (525), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 198/378 (52%), Gaps = 17/378 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  A  D+  DM Q + M R++ GDVG GKT VA+ A   AV  G Q  I+ P 
Sbjct: 584 YEDTPDQAKATADVKADMEQNSPMDRLVCGDVGFGKTEVAIRAAFKAVYDGKQVAILVPT 643

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QHY+  K   +     +E I         +  L+ +  G+  I+IGTH +    +
Sbjct: 644 TILALQHYKTFKNRLEKFPCNIEYINRFKTSKQIKATLKEVNEGKVDILIGTHRIVNKDV 703

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           Q+  L L+++DE+ +FGV+ + +L +      VL +TATPIPRTL  + +G  D+S I  
Sbjct: 704 QFKDLGLLVIDEEQKFGVKTKERLKEMRVNVDVLTLTATPIPRTLHFSLMGARDLSIIQT 763

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R+P+ T     N  DEVI + +   L  G + +++  ++        + ++   N+
Sbjct: 764 PPLNRQPVTTEQHTFN--DEVIRDAISFELRRGGQVFFVHNRV--------KDIISIANN 813

Query: 510 LHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           + +    + + + HG+M     E  M  F  G   +LI+T +IE G+DV +A+ III+ A
Sbjct: 814 VLKLVPDAHVGVAHGQMEGPKLEKTMMKFIEGEYDVLISTNIIEAGLDVPNANTIIIDMA 873

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEE 623
             FGLA LHQ+RGRVGR    + C LL      L+  S  RLS L+   +  DGF IA  
Sbjct: 874 HTFGLADLHQMRGRVGRSNRKAYCYLLAPASTLLNVESRRRLSALEEFSDLGDGFKIAMR 933

Query: 624 DLKQRKEGEILGIKQSGM 641
           DL  R  G +LG +QSG 
Sbjct: 934 DLDIRGAGNLLGAEQSGF 951


>gi|312148294|gb|ADQ30953.1| transcription-repair coupling factor [Borrelia burgdorferi JD1]
          Length = 1125

 Score =  206 bits (525), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 209/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P
Sbjct: 580 PYDETPDQIRAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE      ++++ER 
Sbjct: 760 IPPQNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERL 814

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III N
Sbjct: 815 TPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINN 869

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA 
Sbjct: 870 ANKFGLAQLYQLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAM 929

Query: 623 EDLKQRKEGEILGIKQSG 640
           +D++ R  G +LG +Q G
Sbjct: 930 KDMEIRGVGNLLGREQHG 947


>gi|223889464|ref|ZP_03624050.1| transcription-repair coupling factor [Borrelia burgdorferi 64b]
 gi|223885150|gb|EEF56254.1| transcription-repair coupling factor [Borrelia burgdorferi 64b]
          Length = 1125

 Score =  206 bits (525), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 209/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P
Sbjct: 580 PYDETPDQIRAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE      ++++ER 
Sbjct: 760 IPPQNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERL 814

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III N
Sbjct: 815 TPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINN 869

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA 
Sbjct: 870 ANKFGLAQLYQLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAM 929

Query: 623 EDLKQRKEGEILGIKQSG 640
           +D++ R  G +LG +Q G
Sbjct: 930 KDMEIRGVGNLLGREQHG 947


>gi|15965404|ref|NP_385757.1| transcription-repair coupling factor (TRCF) protein [Sinorhizobium
            meliloti 1021]
 gi|15074585|emb|CAC46230.1| Probable transcription-repair coupling factor (TRCF) protein
            [Sinorhizobium meliloti 1021]
          Length = 1171

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 137/423 (32%), Positives = 228/423 (53%), Gaps = 36/423 (8%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q ++I  +  D+ +   M R++ GDVG GKT VAL A   A   G Q  ++ P
Sbjct: 623  PYDETEDQLNSIDAVRDDLGRGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGVQVAVVVP 682

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEI---ITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              +LA+QH++      +   I ++    + G+   A  +K    +A G+  I++GTHAL 
Sbjct: 683  TTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTKK---EVAEGKTDIVVGTHALL 739

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              SI++  L L+I+DE+  FGV+ + +L +  T  HVL ++ATPIPRTL L   G  ++S
Sbjct: 740  GSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSATPIPRTLQLALTGVRELS 799

Query: 447  KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
             IT  P  R  ++T I P + +  + E L      G +++++CP++ +  E         
Sbjct: 800  LITTPPVDRMAVRTFISPFDAL-VIRETLMREHYRGGQSFYVCPRVSDLPE--------- 849

Query: 507  FNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
               +H+   S      +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+
Sbjct: 850  ---IHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTAN 906

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLSVLKNTED- 616
             +I+  A+ FGLAQL+QLRGRVGR +       L+  P++K     +  RL VL++ +  
Sbjct: 907  TLIVHRADMFGLAQLYQLRGRVGRSK--VRAFALFTLPVNKTLTGPAERRLKVLQSLDTL 964

Query: 617  --GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDP 671
              GF +A  DL  R  G +LG +QSG  K   F + Q  L +++ E+  ++  H     P
Sbjct: 965  GAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEEEIHDTGWSP 1024

Query: 672  DLT 674
             ++
Sbjct: 1025 QIS 1027


>gi|224533484|ref|ZP_03674074.1| transcription-repair coupling factor [Borrelia burgdorferi
           CA-11.2a]
 gi|224513364|gb|EEF83725.1| transcription-repair coupling factor [Borrelia burgdorferi
           CA-11.2a]
          Length = 1125

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 209/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P
Sbjct: 580 PYDETPDQIRAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE      ++++ER 
Sbjct: 760 IPPQNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERL 814

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III N
Sbjct: 815 TPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINN 869

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA 
Sbjct: 870 ANKFGLAQLYQLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAM 929

Query: 623 EDLKQRKEGEILGIKQSG 640
           +D++ R  G +LG +Q G
Sbjct: 930 KDMEIRGVGNLLGREQHG 947


>gi|165933497|ref|YP_001650286.1| transcription-repair coupling factor [Rickettsia rickettsii str.
           Iowa]
 gi|13235395|emb|CAC33672.1| Mfd protein [Rickettsia rickettsii]
 gi|165908584|gb|ABY72880.1| transcription-repair coupling factor [Rickettsia rickettsii str.
           Iowa]
          Length = 1122

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 150/468 (32%), Positives = 253/468 (54%), Gaps = 38/468 (8%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           +IAL L++   K+++    +VE  + +  K   N PFS T+ Q  AI DI +D+     M
Sbjct: 541 EIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAINDIKEDLRNGMLM 600

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346
            R++ GDVG GKT VA+ A+    ++      Q  ++ P  IL  QH+    E  K +  
Sbjct: 601 DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGL 660

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           N + +  +I+    +  R +    +  G+ +IIIGTH+L   +I+++ L L+I+DE+  F
Sbjct: 661 NIKQLSSVISSKEAKIIRSE----LESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHF 716

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  + T ++P  
Sbjct: 717 GVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVHTSVMP-- 774

Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             D VI R   +L E   G +++++ P+I++        + ++   +    +  IA  +G
Sbjct: 775 -FDPVIIR-DALLREHFRGGRSFYVVPRIKD-----IEDIAKQLKQIVPELSYKIA--YG 825

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M+    + VM  F  G   +L++TT+IE GID+ +A+ +II NA+  GL+QL+QLRGR+
Sbjct: 826 KMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLYQLRGRI 885

Query: 584 GRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQ 638
           GRG+      L    H  ++ +S   L +++N+     GF IA  D+  R  G ++G +Q
Sbjct: 886 GRGKMRGYVYLTVASHKKMTSHSLRCLEIIQNSCALGSGFTIASRDMDLRGFGNLIGEEQ 945

Query: 639 SGMPKFLIAQPELHDSLLE--IARKDAKHILTQDPDLTSVR-GQSIRI 683
           SG  K +    EL+  +LE  IA    + I+++ P + ++  G S+ I
Sbjct: 946 SGQIKEV--GTELYQEMLEEQIAIFKDEPIVSEQPFIPTINLGLSVFI 991


>gi|138893727|ref|YP_001124180.1| transcription-repair coupling factor [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265240|gb|ABO65435.1| Transcription-repair coupling factor [Geobacillus
           thermodenitrificans NG80-2]
          Length = 1177

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 207/381 (54%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I++I +DM  +  M R+L GDVG GKT VAL A   A+  G Q   + P
Sbjct: 621 PYQETEDQLRSIEEIKRDMESEKPMDRLLCGDVGYGKTEVALRAAFKAIMDGKQVAFLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE +++  Q   I V ++     +  + + ++ +  G   ++IGTH L    
Sbjct: 681 TTILAQQHYETVRERFQGFPINVGVLNRFRTRKQQAETIKGLKDGTIDMVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S I 
Sbjct: 741 VKFKDLGLLIIDEEQRFGVAHKEKIKQLKANIDVLTLTATPIPRTLHMSMIGVRDLSIIE 800

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNFRSVV 504
             P  R P++T ++      + E IER    L+   + +++   IE+   + E   + V 
Sbjct: 801 TPPENRFPVQTYVMEYTPELVKEAIER---ELARDGQVFFLYNHIEDIDLRAEEIAQLVP 857

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           E          + +   HGRMS+ + ES + +F  G   +L+ TT+IE G+D+ + + +I
Sbjct: 858 E----------ARVTFAHGRMSEAELESTILAFLEGQYDVLVTTTIIETGVDIPNVNTLI 907

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619
           + +A+  GL+QL+QLRGRVGR   ++     Y     L++ +  RL  +K  TE   GF 
Sbjct: 908 VYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNETAEKRLQAIKEFTELGSGFK 967

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           IA  DL  R  G ILG +Q G
Sbjct: 968 IAMRDLSIRGAGNILGAEQHG 988


>gi|254527187|ref|ZP_05139239.1| transcription-repair coupling factor [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538611|gb|EEE41064.1| transcription-repair coupling factor [Prochlorococcus marinus str.
           MIT 9202]
          Length = 1169

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/390 (32%), Positives = 216/390 (55%), Gaps = 17/390 (4%)

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +G    ++  + P+ PT  Q +A+++I  DM     M R++ GDVG GKT VA+ A+  A
Sbjct: 599 DGPWQDELEESFPYQPTPDQITAVEEIKSDMESDKPMDRLVCGDVGFGKTEVAVRAIFKA 658

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           + +G Q +++AP  ILAQQH+  I        I V ++        R +    + + +  
Sbjct: 659 ITSGKQVILLAPTTILAQQHWRTINNRFSPYPIKVSLLNRFKTVNERNEIYAGLKNNEID 718

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           +++ TH +     +   L L+++DE+ RFGV+Q+ K+ +  T   VL ++ATPIPRTL +
Sbjct: 719 LVVATHQILGKETEIKNLGLLVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYM 778

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +  G   +S +   P  R+ IKT +  I+ +D +   +   L  G + +++ P+I +   
Sbjct: 779 SLSGLRQMSLLNTPPPSRRSIKTYLSEID-MDVIRTAINQELDRGGQIFYVLPRISD--- 834

Query: 498 SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                + +  N L   F S    + HG+M++ + E+ M +F NG   L+I TT+IE G+D
Sbjct: 835 -----IDQAVNKLKIMFPSLKFIVAHGQMNETELENAMIAFNNGEVDLMICTTIIESGLD 889

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVLKN 613
           +   + IIIE++  FGL+QL+QLRGRVGR   + +   L++P ++K    +  RL  +K+
Sbjct: 890 IPKVNTIIIEDSHKFGLSQLYQLRGRVGRS-GVQAHAWLFYPNINKINDAAKQRLKAIKD 948

Query: 614 TED---GFLIAEEDLKQRKEGEILGIKQSG 640
             +   G+ +A +D++ R  G +LG +QSG
Sbjct: 949 FSELGSGYQLAMKDMEIRGVGSLLGEEQSG 978


>gi|15594968|ref|NP_212757.1| transcription-repair coupling factor (mfd) [Borrelia burgdorferi
           B31]
 gi|3914012|sp|O51568|MFD_BORBU RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|2688542|gb|AAC66973.1| transcription-repair coupling factor (mfd) [Borrelia burgdorferi
           B31]
          Length = 1125

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 209/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P
Sbjct: 580 PYDETPDQIRAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE      ++++ER 
Sbjct: 760 IPPQNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERL 814

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III N
Sbjct: 815 TPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINN 869

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA 
Sbjct: 870 ANKFGLAQLYQLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAM 929

Query: 623 EDLKQRKEGEILGIKQSG 640
           +D++ R  G +LG +Q G
Sbjct: 930 KDMEIRGVGNLLGREQHG 947


>gi|284040349|ref|YP_003390279.1| transcription-repair coupling factor [Spirosoma linguale DSM 74]
 gi|283819642|gb|ADB41480.1| transcription-repair coupling factor [Spirosoma linguale DSM 74]
          Length = 1126

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 131/413 (31%), Positives = 213/413 (51%), Gaps = 24/413 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  A  D+  DM + + M R++ GDVG GKT +A+ A   AV    Q  ++ P 
Sbjct: 570 YEDTPDQAKATNDVKDDMERPHPMDRLVCGDVGFGKTEIAIRAAFKAVTDNKQVAVLVPT 629

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH++   +   +  + +E I         ++ L+ ++ G+  I+IGTH +    I
Sbjct: 630 TILAMQHFKTFSERMADFPVKIEYINRFRTAGQIKEILKGVSSGEIGILIGTHRIVNKDI 689

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+++DE+ +FGV+ + +L +      VL +TATPIPRTL  + +G  D+S I  
Sbjct: 690 KFKDLGLLVIDEEQKFGVKTKDRLKEMRVEVDVLTLTATPIPRTLHFSLMGARDLSVIAT 749

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R+P+ T +   N   E I R  V   +  G + +++  ++ +         +E   
Sbjct: 750 PPPNRQPVTTEVHAFN---EAIIRDAVSSEVRRGGQVFFVHNRVND---------IESIG 797

Query: 509 SLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           +L       + I + HG+M     E +M  F  G   +LI+T +IE G+D+ +A+ I+I 
Sbjct: 798 NLIMRLVPEARIGVAHGQMDGERLERIMTRFIEGDYDVLISTNIIESGLDIPNANTILIN 857

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621
           NA +FGL+ LHQ+RGRVGR    + C LL  PP  L+ ++  RL  L++  D   GF IA
Sbjct: 858 NAHYFGLSDLHQMRGRVGRSNRKAFCYLLTPPPSVLTADARKRLQTLEDFSDLGEGFKIA 917

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDP 671
             DL  R  G +LG +QSG      F +    L +++ E+   + K +    P
Sbjct: 918 MRDLDIRGAGNLLGAEQSGFVNDLGFEMYHKVLDEAVQELRENEFKDLFETKP 970


>gi|157828769|ref|YP_001495011.1| transcription-repair coupling factor [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|157801250|gb|ABV76503.1| transcription-repair coupling factor [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 1122

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 150/468 (32%), Positives = 253/468 (54%), Gaps = 38/468 (8%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           +IAL L++   K+++    +VE  + +  K   N PFS T+ Q  AI DI +D+     M
Sbjct: 541 EIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAINDIKEDLRNGMLM 600

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346
            R++ GDVG GKT VA+ A+    ++      Q  ++ P  IL  QH+    E  K +  
Sbjct: 601 DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGL 660

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           N + +  +I+    +  R +    +  G+ +IIIGTH+L   +I+++ L L+I+DE+  F
Sbjct: 661 NIKQLSSVISSKEAKIIRSE----LESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHF 716

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  + T ++P  
Sbjct: 717 GVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVHTSVMP-- 774

Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             D VI R   +L E   G +++++ P+I++        + ++   +    +  IA  +G
Sbjct: 775 -FDPVIIR-DALLREHFRGGRSFYVVPRIKD-----IEDIAKQLKQIVPELSYKIA--YG 825

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M+    + VM  F  G   +L++TT+IE GID+ +A+ +II NA+  GL+QL+QLRGR+
Sbjct: 826 KMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLYQLRGRI 885

Query: 584 GRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQ 638
           GRG+      L    H  ++ +S   L +++N+     GF IA  D+  R  G ++G +Q
Sbjct: 886 GRGKMRGYVYLTVASHKKMTSHSLRCLEIIQNSCALGSGFTIASRDMDLRGFGNLIGEEQ 945

Query: 639 SGMPKFLIAQPELHDSLLE--IARKDAKHILTQDPDLTSVR-GQSIRI 683
           SG  K +    EL+  +LE  IA    + I+++ P + ++  G S+ I
Sbjct: 946 SGQIKEV--GTELYQEMLEEQIAIFKDEPIVSEQPFIPTINLGLSVFI 991


>gi|209542295|ref|YP_002274524.1| transcription-repair coupling factor [Gluconacetobacter
            diazotrophicus PAl 5]
 gi|209529972|gb|ACI49909.1| transcription-repair coupling factor [Gluconacetobacter
            diazotrophicus PAl 5]
          Length = 1156

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 138/417 (33%), Positives = 216/417 (51%), Gaps = 25/417 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF  T+ Q  AI D+L+DM     M R++ GDVG GKT VAL A   A  +G Q  ++ P
Sbjct: 602  PFVETEDQSRAIADVLEDMGSGRPMDRLVCGDVGFGKTEVALRAAFVAALSGAQVAVVVP 661

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QH+           I V  ++  +         + +A G  +I+IGTHAL    
Sbjct: 662  TTLLARQHFRTFSARFSGLPITVAQLSRMVTPKEATAVRKGLADGTINIVIGTHALLAKG 721

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +Q+  L L+I+DE+  FGV  + KL       HVL ++ATP+PRTL L   G  ++S I 
Sbjct: 722  VQFADLELLIIDEEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLALTGVREMSLIA 781

Query: 450  EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
              P  R  ++T I+P +   I E I+R +     G + + + P+IE+         ++R 
Sbjct: 782  TPPTDRLAVRTFIMPFDSVVIREAIQRERF---RGGQIFCVVPRIED---------LDRM 829

Query: 508  NSLHEHFTSSIAII--HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             +  +       ++  HGR++  + E VM  F +G   +L++T ++E G+D+   + +II
Sbjct: 830  AARLQDIVPDARLVQAHGRLTPTELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLII 889

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620
              A+ FGL QL+QLRGRVGRG++     L +     LS  +  RL V++  +    GF +
Sbjct: 890  HRADMFGLGQLYQLRGRVGRGKQRGYAYLTWPQTHVLSAAAEKRLEVMQTLDTLGAGFTL 949

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFL---IAQPELHDSLLEIARKDAKHILTQDPDLT 674
            A  DL  R  G +LG +QSG  + +   + Q  L D++ E+ R +      QD D T
Sbjct: 950  ASHDLDLRGAGNLLGDEQSGHIREVGIELYQQMLEDAVAEL-RVEKGRRKAQDRDWT 1005


>gi|292669445|ref|ZP_06602871.1| transcription-repair-coupling factor [Selenomonas noxia ATCC 43541]
 gi|292648898|gb|EFF66870.1| transcription-repair-coupling factor [Selenomonas noxia ATCC 43541]
          Length = 1097

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 135/384 (35%), Positives = 206/384 (53%), Gaps = 28/384 (7%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  A+ +I +DM  +  M R+L GDVG GKT VA+ A   A   G Q  ++ P
Sbjct: 549 PYQETDDQLRAVAEIKRDMESEKPMDRLLCGDVGFGKTEVAVRAAFKAAMDGFQVAVLVP 608

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF-QD 388
             +LAQQHY+            V+++        +   L  +A G+  I+IGTHA+  + 
Sbjct: 609 TTVLAQQHYQTFAARFAEFAPKVDVVCRFRSLREQAATLRDVARGRVDILIGTHAILNRK 668

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +++  L L+IVDE+ RFGV Q+ K+ + A    VL ++ATPIPRTL ++  G  D+S I
Sbjct: 669 RVRFQNLGLLIVDEEQRFGVTQKEKIKEFAAGVDVLTLSATPIPRTLHMSLAGARDMSII 728

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
              PA R P+++ ++  +   +   IER    LS G + Y+I  +IE             
Sbjct: 729 ETPPADRLPVQSYVVESSDAMMRGAIER---ELSRGGQVYFIYNRIES------------ 773

Query: 507 FNSLHEHFT-----SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            + + EH       + IA  HG+M++   E VM  F  G   +L+AT+++E GIDV +A+
Sbjct: 774 IDRMREHLMRLVPEARIASAHGQMNEDILEQVMMDFYEGHYDILLATSIVENGIDVANAN 833

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLK---NTED 616
            II+ +A+ FGL+QL+Q+RGRVGR  +++     Y     LS+ +  RL  +K       
Sbjct: 834 TIIVYDADRFGLSQLYQMRGRVGRSAKMAFAYFTYRRDKALSETAEKRLQAMKEFAQLGS 893

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF IA  DL+ R  G +LG +Q G
Sbjct: 894 GFKIAMRDLEIRGAGSLLGAQQHG 917


>gi|260433551|ref|ZP_05787522.1| transcription-repair coupling factor [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417379|gb|EEX10638.1| transcription-repair coupling factor [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 1152

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 138/399 (34%), Positives = 221/399 (55%), Gaps = 23/399 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  AI D+++D+     M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 594 PYQETEDQLRAIADVMEDLHSGTPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVIAP 653

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH    K   +   + V  ++  +     ++  E +A G   I+IGTHAL    
Sbjct: 654 TTLLARQHAASFKDRFRGFPLEVRQLSRFVSAKEAQQTREGLAKGTVDIVIGTHALLAKG 713

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 714 IRFQNLGLLIIDEEQHFGVAHKERLKQLRSDVHVLTLTATPIPRTLQLSLTGVRDLSIIG 773

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  E      +E 
Sbjct: 774 TPPVDRLAIRTY---VSEFDAVTIR-EALLREHYRGGQSFYVVPRISDLPE------IEE 823

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L E     +  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++
Sbjct: 824 F--LKEQLPELTYVVAHGQMAAGELDDRMNAFYDGKYDILLATTIVESGLDIPTANTMVV 881

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
             A+ FGLAQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +
Sbjct: 882 HRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRARLTPAAEKRLRVLGSLDTLGAGFTL 941

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           A +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 942 ASQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 978


>gi|253998954|ref|YP_003051017.1| transcription-repair coupling factor [Methylovorus sp. SIP3-4]
 gi|253985633|gb|ACT50490.1| transcription-repair coupling factor [Methylovorus sp. SIP3-4]
          Length = 1138

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 154/430 (35%), Positives = 219/430 (50%), Gaps = 29/430 (6%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
              PF  T  Q SAI+ ++ DM     M R++ GDVG GKT VAL A   AV  G Q  ++
Sbjct: 593  GFPFEETPDQLSAIEAVISDMQSGRPMDRLVCGDVGFGKTEVALRAAFVAVMGGRQVAVL 652

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +LA+QHY        +  I +  I+       + +A++ +  G   IIIGTH L Q
Sbjct: 653  VPTTLLAEQHYNNFADRFADWPIKIAEISRFRTAKEQAEAIKGLEDGNIDIIIGTHRLIQ 712

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              +++  L LVI+DE+HRFGV+Q+ +L        VL +TATPIPRTL +   G  + S 
Sbjct: 713  KDVKFKNLGLVILDEEHRFGVRQKEQLKAMRAEVDVLTLTATPIPRTLSMAMEGLREFSV 772

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEE---KKESNFRS 502
            IT  P  R  IKT         E I R   +     G + Y++  +++     KE   R 
Sbjct: 773  ITTPPQKRLAIKTF---ATHYSEGIIREAAMREFKRGGQVYFLHNEVDTIFVMKEKLERI 829

Query: 503  VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            + E          + I I HG++ + + E VM  F      LL+ TT+IE GIDV  A+ 
Sbjct: 830  LPE----------ARIGIAHGQLRERELEHVMRDFYQQRFNLLLCTTIIETGIDVPTANT 879

Query: 563  IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
            II+  A+ FGLAQLHQLRGRVGR    +   LL  P   ++  +  RL  ++  ED   G
Sbjct: 880  IIMNRADMFGLAQLHQLRGRVGRSHHQAYAYLLTDPDRNITPQAQKRLDAIQLLEDLGAG 939

Query: 618  FLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            F +A  DL+ R  GE+LG  QSG M +   +   L+  +L  A K  K    ++PD+ + 
Sbjct: 940  FHLAMHDLEIRGAGELLGDSQSGEMQEIGFS---LYSDMLNHAVKQLK--AGKEPDINAP 994

Query: 677  RGQSIRILLY 686
             G +  I L+
Sbjct: 995  LGVTTEINLH 1004


>gi|289571171|ref|ZP_06451398.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T17]
 gi|289544925|gb|EFD48573.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T17]
          Length = 315

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 110/260 (42%), Positives = 167/260 (64%), Gaps = 16/260 (6%)

Query: 397 LVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +V+VDEQHRFGV+QR +L  KA A   PH+L+MTATPIPRT+ LT  GD++ S + E P 
Sbjct: 1   MVVVDEQHRFGVEQRDQLRAKAPAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPL 60

Query: 454 GRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           GR+PI T +I +      +D    R+    + G++AY + P+I+E  +++ +  V    +
Sbjct: 61  GRQPIATNVIFVKDKPAWLDRAWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGVRPSAT 120

Query: 510 LHEHFTS---------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
               F+           +A++HGR+S  DK++ M +F+ G   +L+ TTVIEVG+DV +A
Sbjct: 121 AEGLFSRLRSAELAELRLALMHGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNA 180

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           +++++ +A+ FG++QLHQLRGR+GRGE  S C+L    P    +  RL  +  T DGF +
Sbjct: 181 TVMLVMDADRFGISQLHQLRGRIGRGEHPSVCLLASWVPPDTPAGQRLRAVAGTMDGFAL 240

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A+ DLK+RKEG++LG  QSG
Sbjct: 241 ADLDLKERKEGDVLGRNQSG 260


>gi|189463579|ref|ZP_03012364.1| hypothetical protein BACCOP_04303 [Bacteroides coprocola DSM 17136]
 gi|189429682|gb|EDU98666.1| hypothetical protein BACCOP_04303 [Bacteroides coprocola DSM 17136]
          Length = 1123

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 138/412 (33%), Positives = 217/412 (52%), Gaps = 23/412 (5%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q K+E G   + +  +  ++  +  +  T  Q  A +++  DM     M R++ 
Sbjct: 528 LIKLYSQRKQEKGFKYSPDSFMQHELEASFIYEDTPDQLKATQEVKADMESDRPMDRLVC 587

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+   K  +     VE ++   
Sbjct: 588 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHYQTFCKRLEGMPCKVEYLSRAR 647

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                 + L+ +  G  +I+IGTH +   S++++ L L+I+DE+ +FGV  + KL Q   
Sbjct: 648 TAKDTSRILKELEAGTVNILIGTHKIIGKSVKFHDLGLLIIDEEQKFGVSVKEKLRQIKV 707

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I   P  R PI+T +   N  +E+I E +   
Sbjct: 708 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFN--EEIITEAINFE 765

Query: 479 LSEGKKAYWICPQIE---EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +S   + +++  +I+   E K    R++ +            + I HG+M   + E ++ 
Sbjct: 766 MSRNGQVFFVNNRIQNLMELKAMIVRNIPD----------CRVCIGHGQMQPEELEKIIF 815

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL
Sbjct: 816 GFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL 875

Query: 596 YHPPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             PPLS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 876 -APPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 926


>gi|260437494|ref|ZP_05791310.1| transcription-repair coupling factor [Butyrivibrio crossotus DSM
           2876]
 gi|292810127|gb|EFF69332.1| transcription-repair coupling factor [Butyrivibrio crossotus DSM
           2876]
          Length = 1177

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 207/378 (54%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+ PT  Q +AI++I  DM     M R++ GDVG GKT VAL A   AV+   Q V + P
Sbjct: 623 PYEPTTDQLTAIEEIKTDMESTRIMDRLICGDVGFGKTEVALRAAFKAVQDNKQVVYLCP 682

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+Q +       ++  + V +++        +  +E +  G   +++GTH +    
Sbjct: 683 TTILAKQIFTNFDSRMKDFGVEVRMLSRFCTPKEAKNTIEGLKKGLVDVVVGTHKILSKD 742

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+I+DE+ RFGV  + K+ Q   +  V+ ++ATPIPRTL ++ +G  D+S + 
Sbjct: 743 VSFKNLGLLIIDEEQRFGVAHKEKIKQMKESVDVITLSATPIPRTLHMSLIGIRDMSVLM 802

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--SNFRSVVERF 507
           E P  R PI+T +   +  + V E +   L+ G + Y++  ++    E   N   +V   
Sbjct: 803 EPPVDRIPIQTFVTEYDE-EMVREAVNRELARGGQVYYVYNKVLGIDEITLNIAKLVPEA 861

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           N         +A  HG+MS+ + E +M  F NG   +L++TT+IE G+D+ + + III +
Sbjct: 862 N---------VAFAHGQMSERELEKIMMDFINGDIDVLVSTTIIETGLDIPNVNTIIIHD 912

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A  +GL+QL+QLRGRVGR   ++   L+Y     LS+ +  RLS ++   D   GF IA 
Sbjct: 913 ANKYGLSQLYQLRGRVGRTGRMAYAFLMYKKDKVLSEIAEKRLSAIREFTDLGSGFRIAM 972

Query: 623 EDLKQRKEGEILGIKQSG 640
           +DL+ R  G +LG +Q G
Sbjct: 973 KDLEIRGAGNMLGEEQHG 990


>gi|216264837|ref|ZP_03436829.1| transcription-repair coupling factor [Borrelia burgdorferi 156a]
 gi|215981310|gb|EEC22117.1| transcription-repair coupling factor [Borrelia burgdorferi 156a]
          Length = 1125

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 209/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P
Sbjct: 580 PYDETPDQIRAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE      ++++ER 
Sbjct: 760 IPPQNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERL 814

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III N
Sbjct: 815 TPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINN 869

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA 
Sbjct: 870 ANKFGLAQLYQLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAM 929

Query: 623 EDLKQRKEGEILGIKQSG 640
           +D++ R  G +LG +Q G
Sbjct: 930 KDMEIRGVGNLLGREQHG 947


>gi|299533693|ref|ZP_07047067.1| transcription-repair coupling factor [Comamonas testosteroni S44]
 gi|298718415|gb|EFI59398.1| transcription-repair coupling factor [Comamonas testosteroni S44]
          Length = 1163

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 149/431 (34%), Positives = 222/431 (51%), Gaps = 21/431 (4%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            ++ + +  F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   A   G 
Sbjct: 601  EQFVADFGFEETADQRAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFVAAMGGK 660

Query: 323  QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            Q   +AP  +LA+QHY+ +        I V  ++          A++ I+ G   I++GT
Sbjct: 661  QVAFLAPTTLLAEQHYQTLVDRFSKWPIKVAEVSRFRSGKEITAAIKGISDGTVDIVVGT 720

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L  +S Q+  L L+I+DE+HRFGV+ +  +        VL +TATPIPRT+ +   G 
Sbjct: 721  HKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTMGMALEGL 780

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D+S I   P  R  IKT +   N    VI E +   L  G + Y++  ++E        
Sbjct: 781  RDLSVIATAPQRRLAIKTFV--RNEGTGVIREAVLRELKRGGQIYFLHNEVE-------- 830

Query: 502  SVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            ++  R   L E    + IA+ HG+M + + E VM  F      +L+ +T+IE GIDV  A
Sbjct: 831  TIENRKQKLEEILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPSA 890

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED-- 616
            + I+I  A+ FGLAQLHQLRGRVGR    +   L+      L+K +  RL  ++  E+  
Sbjct: 891  NTILISRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDLDGLTKQAQQRLEAIQQMEELG 950

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             GF +A  DL+ R  GE+LG  QSG    +    +L++ +L  A +  K    ++PDL S
Sbjct: 951  SGFYLAMHDLEIRGAGEVLGENQSG--NMMEVGFQLYNEMLSEAVRSLK--AGKEPDLLS 1006

Query: 676  VRGQSIRILLY 686
                S  I L+
Sbjct: 1007 PLSASTDINLH 1017


>gi|126464290|ref|YP_001045403.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126106101|gb|ABN78631.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 1059

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/390 (34%), Positives = 209/390 (53%), Gaps = 23/390 (5%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           I ++     PF+ +  Q  AI ++  D+     M R++ GDVG GKT +AL A AA   +
Sbjct: 519 IYERFAGRFPFTLSPDQRRAIAEVRDDLVAGRPMNRLVLGDVGFGKTEIALRAAAAVALS 578

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q  ++AP  +LA+QH E  ++  +   + V  ++  +P    + A + +  G   I++
Sbjct: 579 GAQVALVAPSTVLARQHAETFRRRFEGFGVTVAHLSRLVPSKEAKAARDGLRDGSIRIVV 638

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTHAL    + +  L L+IVDE+ RFG   + +L       HVL MTATPIPRTL    +
Sbjct: 639 GTHALLGKGVAFADLGLLIVDEEQRFGAAHKARLRALGADLHVLTMTATPIPRTLQTALV 698

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEE--K 495
           G  D+S+I   PA R+ ++T+       D  + R + +L E   G +++ I P+I E   
Sbjct: 699 GLQDLSEIATPPARRRAVRTLTA---EEDAAVLR-QALLRERRRGGQSFVIVPRIAEIDA 754

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E+  R ++           + + + HG ++  + +  M  F  G   +L+AT+++E G+
Sbjct: 755 TEARLRDLLP---------EAQLRVAHGDLAPEELDRAMVDFAAGRGDILLATSIVEAGL 805

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN 613
           DV  A+ +I+   + FGLAQLHQLRGRVGRG   + C L++ P   L + +  RL  L+ 
Sbjct: 806 DVPRANTMIVMQPQLFGLAQLHQLRGRVGRGARQAYCYLMHGPGDDLDEAALRRLGTLQA 865

Query: 614 TE---DGFLIAEEDLKQRKEGEILGIKQSG 640
            +    G  IA EDL QR  GE+ G +QSG
Sbjct: 866 FDRLGAGAAIAAEDLDQRGAGELFGERQSG 895


>gi|260893903|ref|YP_003240000.1| transcription-repair coupling factor [Ammonifex degensii KC4]
 gi|260866044|gb|ACX53150.1| transcription-repair coupling factor [Ammonifex degensii KC4]
          Length = 1123

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/380 (34%), Positives = 205/380 (53%), Gaps = 19/380 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q  AI D+  DM +   M R++ GDVG GKT +AL A   AV  G Q  ++ 
Sbjct: 580 FPYEETPDQLRAIADVKADMEKPRPMDRLICGDVGFGKTEIALRAAFKAVMDGKQVAVLV 639

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILAQQHY           I V  +      A +R+ ++ +  G   I+IGTH L Q+
Sbjct: 640 PTTILAQQHYRTFSSRFAPYPIRVAWLCRFQTPAEQREVIKGLKAGTIDIVIGTHRLLQN 699

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +Q+  L LVI+DE+ RFGV Q+ KL        VL +TATPIPRTL ++ +G  D S +
Sbjct: 700 DVQFRDLGLVIIDEEQRFGVLQKEKLKLLRKEVDVLTLTATPIPRTLYMSLVGLRDTSCL 759

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
           T  P  R P++T ++  +   I E I R    L+ G + Y++  ++          +VE 
Sbjct: 760 TTPPPDRLPVETYVVEEDPAIIREAIRR---ELARGGQVYFVYNRVA--------GIVEV 808

Query: 507 FNSL-HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            N + H    + +A  HG+M +   E +M  F +    +L+ATT++E G+D+ + + +I+
Sbjct: 809 ANWVKHLVPEARVAYAHGQMPEAALERIMLDFIDHKYDVLVATTIVENGLDIGNVNTLIV 868

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620
           ++A+  GL+QL+QLRGRVGR   ++    LY     +++ +  RL  +K+      GF +
Sbjct: 869 KDADQLGLSQLYQLRGRVGRTNRLAYAYFLYRRDKIINEAAKARLRAIKDFTSLGAGFKV 928

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A+ DL+ R  G +LG +Q G
Sbjct: 929 AKRDLEIRGAGNLLGTEQHG 948


>gi|307308795|ref|ZP_07588491.1| transcription-repair coupling factor [Sinorhizobium meliloti BL225C]
 gi|307317268|ref|ZP_07596709.1| transcription-repair coupling factor [Sinorhizobium meliloti AK83]
 gi|306897356|gb|EFN28101.1| transcription-repair coupling factor [Sinorhizobium meliloti AK83]
 gi|306900801|gb|EFN31412.1| transcription-repair coupling factor [Sinorhizobium meliloti BL225C]
          Length = 1169

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 137/423 (32%), Positives = 228/423 (53%), Gaps = 36/423 (8%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q ++I  +  D+ +   M R++ GDVG GKT VAL A   A   G Q  ++ P
Sbjct: 621  PYDETEDQLNSIDAVRDDLGRGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGVQVAVVVP 680

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEI---ITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              +LA+QH++      +   I ++    + G+   A  +K    +A G+  I++GTHAL 
Sbjct: 681  TTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTKK---EVAEGKTDIVVGTHALL 737

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              SI++  L L+I+DE+  FGV+ + +L +  T  HVL ++ATPIPRTL L   G  ++S
Sbjct: 738  GSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSATPIPRTLQLALTGVRELS 797

Query: 447  KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
             IT  P  R  ++T I P + +  + E L      G +++++CP++ +  E         
Sbjct: 798  LITTPPVDRMAVRTFISPFDAL-VIRETLMREHYRGGQSFYVCPRVSDLPE--------- 847

Query: 507  FNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
               +H+   S      +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+
Sbjct: 848  ---IHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTAN 904

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLSVLKNTED- 616
             +I+  A+ FGLAQL+QLRGRVGR +       L+  P++K     +  RL VL++ +  
Sbjct: 905  TLIVHRADMFGLAQLYQLRGRVGRSK--VRAFALFTLPVNKTLTGPAERRLKVLQSLDTL 962

Query: 617  --GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDP 671
              GF +A  DL  R  G +LG +QSG  K   F + Q  L +++ E+  ++  H     P
Sbjct: 963  GAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEEEIHDTGWSP 1022

Query: 672  DLT 674
             ++
Sbjct: 1023 QIS 1025


>gi|313201057|ref|YP_004039715.1| transcription-repair coupling factor [Methylovorus sp. MP688]
 gi|312440373|gb|ADQ84479.1| transcription-repair coupling factor [Methylovorus sp. MP688]
          Length = 1139

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 154/430 (35%), Positives = 219/430 (50%), Gaps = 29/430 (6%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
              PF  T  Q SAI+ ++ DM     M R++ GDVG GKT VAL A   AV  G Q  ++
Sbjct: 593  GFPFEETPDQLSAIEAVISDMQSGRPMDRLVCGDVGFGKTEVALRAAFVAVMGGRQVAVL 652

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +LA+QHY        +  I +  I+       + +A++ +  G   IIIGTH L Q
Sbjct: 653  VPTTLLAEQHYNNFADRFADWPIKIAEISRFRTAKEQAEAIKGLEDGNIDIIIGTHRLIQ 712

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              +++  L LVI+DE+HRFGV+Q+ +L        VL +TATPIPRTL +   G  + S 
Sbjct: 713  KDVKFKNLGLVILDEEHRFGVRQKEQLKAMRAEVDVLTLTATPIPRTLSMAMEGLREFSV 772

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEE---KKESNFRS 502
            IT  P  R  IKT         E I R   +     G + Y++  +++     KE   R 
Sbjct: 773  ITTPPQKRLAIKTF---ATHYSEGIIREAAMREFKRGGQVYFLHNEVDTIFVMKEKLERI 829

Query: 503  VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            + E          + I I HG++ + + E VM  F      LL+ TT+IE GIDV  A+ 
Sbjct: 830  LPE----------ARIGIAHGQLRERELEHVMRDFYQQRFNLLLCTTIIETGIDVPTANT 879

Query: 563  IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
            II+  A+ FGLAQLHQLRGRVGR    +   LL  P   ++  +  RL  ++  ED   G
Sbjct: 880  IIMNRADMFGLAQLHQLRGRVGRSHHQAYAYLLTDPDRNITPQAQKRLDAIQLLEDLGAG 939

Query: 618  FLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            F +A  DL+ R  GE+LG  QSG M +   +   L+  +L  A K  K    ++PD+ + 
Sbjct: 940  FHLAMHDLEIRGAGELLGDSQSGEMQEIGFS---LYSDMLNHAVKQLK--AGKEPDINAP 994

Query: 677  RGQSIRILLY 686
             G +  I L+
Sbjct: 995  LGVTTEINLH 1004


>gi|302343056|ref|YP_003807585.1| transcription-repair coupling factor [Desulfarculus baarsii DSM
           2075]
 gi|301639669|gb|ADK84991.1| transcription-repair coupling factor [Desulfarculus baarsii DSM
           2075]
          Length = 1147

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 130/381 (34%), Positives = 206/381 (54%), Gaps = 17/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             P+  T  Q  AI+D++ DM     M R++ GDVG GKT VAL A   A   G Q   +
Sbjct: 605 GFPYEETPDQAQAIEDVIADMITDKPMDRLVCGDVGYGKTEVALRAAFLAAMQGKQVAFL 664

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  +L +QH + + +  ++  ++VE ++     A ++  LER+  G+  I++GTH + Q
Sbjct: 665 APTTVLTEQHCQTLTQRLKDQPLVVESLSRFKTPAQQKDILERLRQGKVDILVGTHRIIQ 724

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
               +  L LVIVDE+ RFGV+ + +L +      V+ +TATPIPRTL ++  G  D+S 
Sbjct: 725 KDAVFKDLGLVIVDEEQRFGVKDKERLKKMRRLVDVITLTATPIPRTLQMSLSGVRDLSV 784

Query: 448 ITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R+ IKT +   +   + E + R    L  G + +++  ++++        +V 
Sbjct: 785 INTPPEDRQSIKTYLSAFSPGGVSEAVAR---ELERGGQVFFVHNRVQDL--DKMAGLVR 839

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           R         + +A+ HG+M++ + E VM  F +    +L+ TT+IE G+D+  A+ III
Sbjct: 840 RLAP-----QARVAMAHGQMAEKELEKVMLQFVHKEVDVLVCTTIIESGLDIPSANTIII 894

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKN---TEDGFLI 620
            NA+ FGL+Q++QLRGRVGR  + +   L       LS ++  RL  L +      GF I
Sbjct: 895 NNADKFGLSQIYQLRGRVGRSAQRAYAYLFIKSEAALSSDARKRLKALMDFTQLGSGFAI 954

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  D++ R  G +LG  QSGM
Sbjct: 955 AMHDMQIRGAGNMLGEAQSGM 975


>gi|224532959|ref|ZP_03673567.1| transcription-repair coupling factor [Borrelia burgdorferi WI91-23]
 gi|224512076|gb|EEF82469.1| transcription-repair coupling factor [Borrelia burgdorferi WI91-23]
          Length = 1125

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 209/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P
Sbjct: 580 PYDETPDQIRAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE      ++++ER 
Sbjct: 760 IPPQNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERL 814

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III N
Sbjct: 815 TPY-----ARIAIIHGKLTGEEIENIMHNFIEKAYQILLATTIIENGIDIPNANTIIINN 869

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA 
Sbjct: 870 ANKFGLAQLYQLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAM 929

Query: 623 EDLKQRKEGEILGIKQSG 640
           +D++ R  G +LG +Q G
Sbjct: 930 KDMEIRGVGNLLGREQHG 947


>gi|99081190|ref|YP_613344.1| transcription-repair coupling factor [Ruegeria sp. TM1040]
 gi|99037470|gb|ABF64082.1| transcription-repair coupling factor [Ruegeria sp. TM1040]
          Length = 1149

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 136/396 (34%), Positives = 220/396 (55%), Gaps = 17/396 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI+D++ D++    M R++ GDVG GKT VA+ A   A  +G Q  I+AP
Sbjct: 593 PYQETDDQLRAIEDVISDLNSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVAP 652

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH    K+  +   + V  ++  +      +  E +A G   I++GTHAL   +
Sbjct: 653 TTLLARQHAAAFKERFRGFPLEVRQLSRFVTSKEASQTREGMAKGTVDIVVGTHALLAKN 712

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 713 IRFQNLGLLIIDEEQHFGVAHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 772

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R  I+T +   + I  + E L      G +++++ P+I +  E      +E F  
Sbjct: 773 TPPVDRLAIRTYVTEFDAI-TIREALLREHYRGGQSFYVVPRISDLPE------IEAF-- 823

Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L E     S  + +G+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++  A
Sbjct: 824 LQEQLPELSYVVANGQMAAGELDDRMNAFYDGKYDILLATTIVESGLDIPTANTMVVHRA 883

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLAQL+Q+RGRVGR +  +   L   P   L+ ++  RL VL + +    GF +A +
Sbjct: 884 DMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRQRLTDSAEKRLRVLGSLDTLGAGFTLASQ 943

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 944 DLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 977


>gi|264678103|ref|YP_003278010.1| transcription-repair coupling factor [Comamonas testosteroni CNB-2]
 gi|262208616|gb|ACY32714.1| transcription-repair coupling factor [Comamonas testosteroni CNB-2]
          Length = 1163

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 149/431 (34%), Positives = 222/431 (51%), Gaps = 21/431 (4%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            ++ + +  F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   A   G 
Sbjct: 601  EQFVADFGFEETADQRAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFVAAMGGK 660

Query: 323  QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            Q   +AP  +LA+QHY+ +        I V  ++          A++ I+ G   I++GT
Sbjct: 661  QVAFLAPTTLLAEQHYQTLVDRFSKWPIKVAEVSRFRSGKEITAAIKGISDGTVDIVVGT 720

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L  +S Q+  L L+I+DE+HRFGV+ +  +        VL +TATPIPRT+ +   G 
Sbjct: 721  HKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTMGMALEGL 780

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D+S I   P  R  IKT +   N    VI E +   L  G + Y++  ++E        
Sbjct: 781  RDLSVIATAPQRRLAIKTFV--RNEGTGVIREAVLRELKRGGQIYFLHNEVE-------- 830

Query: 502  SVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            ++  R   L E    + IA+ HG+M + + E VM  F      +L+ +T+IE GIDV  A
Sbjct: 831  TIENRKQKLEEILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPSA 890

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED-- 616
            + I+I  A+ FGLAQLHQLRGRVGR    +   L+      L+K +  RL  ++  E+  
Sbjct: 891  NTILISRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDLDGLTKQAQQRLEAIQQMEELG 950

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             GF +A  DL+ R  GE+LG  QSG    +    +L++ +L  A +  K    ++PDL S
Sbjct: 951  SGFYLAMHDLEIRGAGEVLGENQSG--NMMEVGFQLYNEMLSEAVRSLK--AGKEPDLLS 1006

Query: 676  VRGQSIRILLY 686
                S  I L+
Sbjct: 1007 PLSASTDINLH 1017


>gi|196250768|ref|ZP_03149455.1| transcription-repair coupling factor [Geobacillus sp. G11MC16]
 gi|196209718|gb|EDY04490.1| transcription-repair coupling factor [Geobacillus sp. G11MC16]
          Length = 1177

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 207/381 (54%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I++I +DM  +  M R+L GDVG GKT VAL A   A+  G Q   + P
Sbjct: 621 PYQETEDQLRSIEEIKRDMESEKPMDRLLCGDVGYGKTEVALRAAFKAIMDGKQVAFLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE +++  Q   I V ++     +  + + ++ +  G   ++IGTH L    
Sbjct: 681 TTILAQQHYETVRERFQGFPINVGLLNRFRTRKQQAETIKGLKDGTIDMVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S I 
Sbjct: 741 VKFKDLGLLIIDEEQRFGVAHKEKIKQLKANIDVLTLTATPIPRTLHMSMIGVRDLSIIE 800

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNFRSVV 504
             P  R P++T ++      + E IER    L+   + +++   IE+   + E   + V 
Sbjct: 801 TPPENRFPVQTYVMEYTPELVKEAIER---ELARDGQVFFLYNHIEDIDLRAEEIAQLVP 857

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           E          + +   HGRMS+ + ES + +F  G   +L+ TT+IE G+D+ + + +I
Sbjct: 858 E----------ARVTFAHGRMSEAELESTILAFLEGQYDVLVTTTIIETGVDIPNVNTLI 907

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619
           + +A+  GL+QL+QLRGRVGR   ++     Y     L++ +  RL  +K  TE   GF 
Sbjct: 908 VYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNETAEKRLQAIKEFTELGSGFK 967

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           IA  DL  R  G ILG +Q G
Sbjct: 968 IAMRDLSIRGAGNILGAEQHG 988


>gi|312149190|gb|ADQ29261.1| transcription-repair coupling factor [Borrelia burgdorferi N40]
          Length = 1125

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 209/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P
Sbjct: 580 PYDETPDQIRAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE      ++++ER 
Sbjct: 760 IPPQNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERL 814

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III N
Sbjct: 815 TPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINN 869

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA 
Sbjct: 870 ANKFGLAQLYQLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAM 929

Query: 623 EDLKQRKEGEILGIKQSG 640
           +D++ R  G +LG +Q G
Sbjct: 930 KDMEIRGVGNLLGREQHG 947


>gi|13470979|ref|NP_102548.1| transcription repair coupling factor [Mesorhizobium loti MAFF303099]
 gi|14021722|dbj|BAB48334.1| transcription repair coupling factor [Mesorhizobium loti MAFF303099]
          Length = 1165

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 146/452 (32%), Positives = 236/452 (52%), Gaps = 42/452 (9%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +AGQ+  +   +Q +    + +  EG +  +     P+  T  Q++AI  +  D+     
Sbjct: 582  MAGQLIRIAAERQMRAAPAL-VPAEG-LYDEFAARFPYEETDDQQTAIDSVRDDLGAGKP 639

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV- 352
            M R++ GDVG GKT VAL A   A   G Q  ++ P  +L++QH++   +      I V 
Sbjct: 640  MDRLICGDVGFGKTEVALRAAFIAAMEGFQVAVVVPTTLLSRQHFKTFSQRFSGLPIRVA 699

Query: 353  --EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
                + G    A  +KAL   A GQ  I++GTHAL   SI +  L L+I+DE+  FGV+ 
Sbjct: 700  QASRLVGAKELAETKKAL---AEGQVDIVVGTHALLGSSISFKNLGLLIIDEEQHFGVKH 756

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--I 468
            + +L    T  HVL ++ATPIPRTL L   G  ++S I   P  R  ++T I P +   I
Sbjct: 757  KERLKDLKTDVHVLTLSATPIPRTLQLALTGVRELSLIATPPVDRMAVRTFISPFDPLVI 816

Query: 469  DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-----IAIIHG 523
             E + R +     G  ++++ P+I +  E            +HE    S     +A+ HG
Sbjct: 817  RETLLRERY---RGGHSFYVVPRISDLSE------------IHEFLKESVPELKVAVAHG 861

Query: 524  RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +M   + + +M++F +G   +L++TT++E G+D+  A+ +II  A+ FGL+QL+QLRGRV
Sbjct: 862  QMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTLIIHRADMFGLSQLYQLRGRV 921

Query: 584  GRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIK 637
            GR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  R  G +LG +
Sbjct: 922  GR-SKVRAYALFTLPANRKLTDTAERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEE 980

Query: 638  QSGMPK---FLIAQPELHDSLLEIARKDAKHI 666
            QSG  K   F + Q  L +++ E+  KD+  +
Sbjct: 981  QSGHIKEVGFELYQQMLEEAVAEV--KDSGEV 1010


>gi|33592030|ref|NP_879674.1| transcription-repair coupling factor [Bordetella pertussis Tohama
           I]
 gi|33571674|emb|CAE41167.1| transcription-repair coupling factor [Bordetella pertussis Tohama
           I]
 gi|332381446|gb|AEE66293.1| transcription-repair coupling factor [Bordetella pertussis CS]
          Length = 1143

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 200/377 (53%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q +AI+ ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++ P 
Sbjct: 600 FEETPDQAAAIQAVIMDMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVANGKQVALLCPT 659

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH +       +  + V  ++          A+E I  G+  I+IGTH +    +
Sbjct: 660 TLLAEQHAQTFSDRFADWPVRVVELSRFRSAKEVAAAVEGINDGRVDIVIGTHKILSKDV 719

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I  
Sbjct: 720 RFKRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIAT 779

Query: 451 KPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R  IKT    + R D   + E L   L  G + Y++  ++E     N R+ +E   
Sbjct: 780 APQKRLAIKTF---VRREDGSTIREALLRELKRGGQVYFLHNEVETIH--NRRARLEELV 834

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                  + IA+ HG+M + + E VM  F      +L+ TT+IE GID+  A+ I+I  A
Sbjct: 835 P-----EARIAVAHGQMPERELEQVMKGFYQQRHNVLLCTTIIETGIDIPTANTIVIHRA 889

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLAQLHQLRGRVGR    +   LL      ++ N+  RL  ++  E+   GF +A  
Sbjct: 890 DRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITNNAKKRLEAIQAMEELGSGFYLAMH 949

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  GEILG  QSG
Sbjct: 950 DLEIRGTGEILGDSQSG 966


>gi|253564911|ref|ZP_04842367.1| transcription-repair coupling factor [Bacteroides sp. 3_2_5]
 gi|251946376|gb|EES86753.1| transcription-repair coupling factor [Bacteroides sp. 3_2_5]
          Length = 1125

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 137/410 (33%), Positives = 218/410 (53%), Gaps = 19/410 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+ QDM +   M R++ 
Sbjct: 526 LIKLYSQRREEKGFAYSPDSFLQRELEASFIYEDTPDQSKATADVKQDMERDMPMDRLVC 585

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  +   +     VE ++   
Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRDRLKGLPCRVEYLSRAR 645

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  ++ +  G  +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 646 TAAQAKAVIKGLEAGDVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQMKV 705

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I+  P  R PI+T +   +  +EVI + +   
Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFS--EEVIADAINFE 763

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + + +  +I    E   ++++ R      H     IAI HG+M   + E ++  F
Sbjct: 764 MSRNGQVFLVNNRIANLPE--LKAMILR------HIPDCRIAIGHGQMEPAELEQIIFGF 815

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +LI TT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 816 VNYDYDVLIVTTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-A 874

Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PPLS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 875 PPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 924


>gi|218960874|ref|YP_001740649.1| putative transcription-repair coupling factor [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729531|emb|CAO80443.1| putative transcription-repair coupling factor [Candidatus
           Cloacamonas acidaminovorans]
          Length = 1127

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 141/429 (32%), Positives = 223/429 (51%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W +  R+     EL+A  I  L   +  +  +GI    + +  +++  +  +  T  Q 
Sbjct: 531 KWNNTKRKAAQQIELIAADIVKLYAERSSR--LGIAHQPDTEWQKELEDSFIYEDTPDQS 588

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A K+I +DM     M R+L GDVG GKT VA+ A   AV +G Q  ++AP  +L +QHY
Sbjct: 589 KATKEIKEDMELPAPMERLLCGDVGFGKTEVAIRAAFKAVCSGYQVAVLAPTTLLVEQHY 648

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              ++      + + + +        +K L  +  G   I IGTH L    +Q+ KL L+
Sbjct: 649 RVFRERLAQYPVKIVMFSRFRKNTAMKKDLLGLKSGSIDIAIGTHRLLSKDVQFKKLGLL 708

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+ + KL    +    L M+ATPIPRTL +      +IS +   P  R P+
Sbjct: 709 IIDEEHRFGVRHKEKLRALQSNVDTLYMSATPIPRTLNMALSKLKEISLMQTSPKERLPV 768

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           +T+I P  R  EVI + ++  +  G + ++I  +++  E   +  R+ + +   +     
Sbjct: 769 RTIITP--RDMEVIKDAIRREIDRGGQVFFIHNRVQTIETVATELRNAMPKVRFI----- 821

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
               + H +M +   E VM  F     ++LI+TT+IE GID+ +A+ I+I+NAE FGLAQ
Sbjct: 822 ----VGHAQMPEQQLERVMADFWAKEYQVLISTTIIENGIDIPNANTILIDNAETFGLAQ 877

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           L+Q+RGRVGR    +   LL     +  +  RL  L   +    GF +A  DL+ R  G 
Sbjct: 878 LYQMRGRVGRSNRRAYAYLLISKGTTTVARKRLEALTQYDYLGAGFQVALRDLELRGAGT 937

Query: 633 ILGIKQSGM 641
           ILG KQSG+
Sbjct: 938 ILGTKQSGI 946


>gi|149922002|ref|ZP_01910444.1| Transcription-repair coupling factor [Plesiocystis pacifica SIR-1]
 gi|149817167|gb|EDM76647.1| Transcription-repair coupling factor [Plesiocystis pacifica SIR-1]
          Length = 1243

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/391 (32%), Positives = 211/391 (53%), Gaps = 21/391 (5%)

Query: 259  GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
            G +  +  +  PF  T  Q  AI  +  D+S +  M R++ GDVG GKT VAL A     
Sbjct: 659  GDMYAEFEQTFPFEETPDQADAIDSVQDDLSSQRPMDRLVCGDVGFGKTEVALRAAFRVA 718

Query: 319  EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             AG Q  ++AP  +L QQHY    +      + V ++      A R++ L  I  G   +
Sbjct: 719  AAGKQVAVLAPTTVLVQQHYLTFSERMSAFPLEVGVLNRFSSPADRKRTLAGIKDGTVDV 778

Query: 379  IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            ++GTH L    +++ +L LVI+DE+ RFGV+Q+ +  +  T+  +L +TATPIPRTL ++
Sbjct: 779  VVGTHRLLSRDVRFKELGLVIIDEEQRFGVKQKDRFKKLKTSVDMLTLTATPIPRTLHMS 838

Query: 439  SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIE--E 494
             LG  +IS IT  P  R  ++T    + R  +V+  E ++  L+ G + +++ P++   E
Sbjct: 839  LLGMREISMITTAPVDRLAVRTY---LTRHSDVVLEEGIRRELARGGQIFYVVPRVMGIE 895

Query: 495  KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            +     R +V           + + + HG+M     E  M  F      +L++TT+IE G
Sbjct: 896  EHAVRIRELVP---------EARVIVAHGQMPPEMLEQTMVDFVRHEADVLVSTTIIESG 946

Query: 555  IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK 612
            +D+  A+ + I  A+ FGLAQL+QLRGR+GR +  + C L+      LS+++  RL  ++
Sbjct: 947  LDIPRANTMFIARADQFGLAQLYQLRGRIGRSKLRAYCYLMVASLERLSEDARRRLEAIQ 1006

Query: 613  NTED---GFLIAEEDLKQRKEGEILGIKQSG 640
               +   GF +A +DL+ R  G++LG +QSG
Sbjct: 1007 RHSELGAGFNVASQDLEIRGAGDLLGRRQSG 1037


>gi|86135186|ref|ZP_01053768.1| transcription-repair coupling factor [Polaribacter sp. MED152]
 gi|85822049|gb|EAQ43196.1| transcription-repair coupling factor [Polaribacter sp. MED152]
          Length = 1110

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 136/428 (31%), Positives = 225/428 (52%), Gaps = 17/428 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++  A  + +A  +  L  +++ +K  G     +  I  ++  +  +  T  Q S
Sbjct: 503 WKKIKQKTKARVKHIAFNLIQLYAKRKLQK--GFAFGPDTHIQHELEGSFMYEDTPDQYS 560

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D+ +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  I+ P  ILA QHY+
Sbjct: 561 ATQDVKRDMEKDQPMDRLVCGDVGFGKTEVAVRAAFKAVDNGKQVAILVPTTILAFQHYQ 620

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  I ++ +        +  A+  +  G   IIIGTH L    I++  L L+I
Sbjct: 621 TFSERLKDFPIKIDYLNRFRTAKQKTAAINGVNDGSVDIIIGTHQLTNQRIKFKDLGLLI 680

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL         L +TATPIPRTL  + +   D+S I   P  R PI+
Sbjct: 681 IDEEQKFGVAVKDKLKTLKENVDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRHPIE 740

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + +I  +  + + + +   +S G + ++I  +I+  KE     +++R        ++ I 
Sbjct: 741 SNVIRFSE-ETIRDAISYEISRGGQVFFIHNRIDNIKE--VAGLLQRLVP-----SAKIG 792

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E +M  F NG   +L++TT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 793 IGHGQMEGKKLEELMFGFMNGEFDVLVSTTIIESGLDVPNANTIFINNANNFGLSDLHQM 852

Query: 580 RGRVGRGEEISSCILLYHPP---LSKNSYTRLSVL---KNTEDGFLIAEEDLKQRKEGEI 633
           RGRVGR  + + C  +  PP   ++ ++  R+  L    +   G  IA +DL+ R  G++
Sbjct: 853 RGRVGRSNKKAFCYFI-TPPYHMMTDDARKRIEALVLFSDLGSGINIAMKDLEIRGAGDL 911

Query: 634 LGIKQSGM 641
           LG +QSG 
Sbjct: 912 LGGEQSGF 919


>gi|33602793|ref|NP_890353.1| transcription-repair coupling factor [Bordetella bronchiseptica
           RB50]
 gi|33577235|emb|CAE35792.1| transcription-repair coupling factor [Bordetella bronchiseptica
           RB50]
          Length = 1151

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 200/377 (53%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q +AI+ ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++ P 
Sbjct: 608 FEETPDQAAAIQAVIMDMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVANGKQVALLCPT 667

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH +       +  + V  ++          A+E I  G+  I+IGTH +    +
Sbjct: 668 TLLAEQHAQTFSDRFADWPVRVVELSRFRSAKEVAAAVEGINDGRVDIVIGTHKILSKDV 727

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I  
Sbjct: 728 RFKRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIAT 787

Query: 451 KPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R  IKT    + R D   + E L   L  G + Y++  ++E     N R+ +E   
Sbjct: 788 APQKRLAIKTF---VRREDGSTIREALLRELKRGGQVYFLHNEVETIH--NRRARLEELV 842

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                  + IA+ HG+M + + E VM  F      +L+ TT+IE GID+  A+ I+I  A
Sbjct: 843 P-----EARIAVAHGQMPERELEQVMKGFYQQRHNVLLCTTIIETGIDIPTANTIVIHRA 897

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLAQLHQLRGRVGR    +   LL      ++ N+  RL  ++  E+   GF +A  
Sbjct: 898 DRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITNNAKKRLEAIQAMEELGSGFYLAMH 957

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  GEILG  QSG
Sbjct: 958 DLEIRGTGEILGDSQSG 974


>gi|316934177|ref|YP_004109159.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            DX-1]
 gi|315601891|gb|ADU44426.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            DX-1]
          Length = 1172

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 146/445 (32%), Positives = 236/445 (53%), Gaps = 22/445 (4%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +AG++  +   +  ++   +PI  + ++  +     P+  T+ Q +AI   L D+ +   
Sbjct: 586  IAGELIKVAAERHLREAPKLPI--QPQLYDEFCARFPYDETEDQLAAINAALGDLEKGTP 643

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA+QH +   +  +   + V 
Sbjct: 644  MDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTFTERFRGFPVHVG 703

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
              +  +      +  + IA G   I++GTHAL   SI++  L LVIVDE+  FGV  + K
Sbjct: 704  QASRLVSAKELTQVKKGIADGTLDIVVGTHALLGKSIKFKDLGLVIVDEEQHFGVTHKEK 763

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEV 471
            L Q     HVL ++ATPIPRTL L   G  D+S I   P  R  ++T + P +   I E 
Sbjct: 764  LKQLRAEVHVLTLSATPIPRTLQLAMTGVRDLSIIASPPVDRLAVRTFVAPHDPLMIREA 823

Query: 472  IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
            + R +     G +A+++ P+I++  E      V+ F  L +H     +A+ HG+M     
Sbjct: 824  LLRERY---RGGQAFYVVPRIDDLAE------VKDF--LDKHVPEMKVAVAHGQMPPAVI 872

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE-EI 589
            E +M +F +G   +L++TT++E G+D+ +A+ +I+  A+ FGLAQL+QLRGRVGR +   
Sbjct: 873  EDIMSAFYDGKFDILLSTTIVESGLDIPNANTLIVHRADMFGLAQLYQLRGRVGRSKLRA 932

Query: 590  SSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
             +   L    ++  +  RL VL++ E    GF +A  DL  R  G +LG +QSG  K + 
Sbjct: 933  YALFTLPQHNITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVG 992

Query: 647  AQPELHDSLLEIARKDAKHILTQDP 671
               EL+  +LE A  + K  +  +P
Sbjct: 993  F--ELYQQMLEEAITNLKAGIVDEP 1015


>gi|255071025|ref|XP_002507594.1| predicted protein [Micromonas sp. RCC299]
 gi|226522869|gb|ACO68852.1| predicted protein [Micromonas sp. RCC299]
          Length = 570

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/416 (31%), Positives = 226/416 (54%), Gaps = 19/416 (4%)

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           L+ GQ+++ L R Q  ++   P + +  I Q+     P   T  Q  A++D  +D+++++
Sbjct: 115 LVMGQMSIYLQRLQSVRKPYCPPSED--IYQRFNELFPHDLTPDQALAVQDCYEDLTERD 172

Query: 293 R-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M RI+ GDVG GKT VA+ A+      GGQ  ++AP  +LA+QH   +    +     
Sbjct: 173 TPMDRIIVGDVGFGKTEVAMRAVFRVFSGGGQIFVLAPTTVLAKQHAATMTARLRPFGAS 232

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ-DSIQYYKLILVIVDEQHRFGVQQ 410
           ++++T N+ +A ++  +ER   G+ H+++GTH+L    S  Y  L L+++DE+ RFGV+ 
Sbjct: 233 IDLMTRNVKEAEKKDIIERWLAGRIHVLVGTHSLLNLPSTMYDPLNLLVIDEEQRFGVKH 292

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           + K++   ++  VL ++ATPIPRTL +   G  D S +T  P  R+PI T +  +     
Sbjct: 293 KDKISSLKSSVDVLTLSATPIPRTLHMAMAGFRDASLVTTPPPERRPIITRL-QVYEQSV 351

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI-IHGRMSDID 529
           V + ++  L  G + +++ P+I+    +  R        L E F   I + +HG+M    
Sbjct: 352 VHQAIQYELGRGGQIFYVVPRIQMMNAAKKR--------LKEIFQDIIILEVHGQMKGEY 403

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
            +  MD F +G   +L+ TT++E G+D+ + + II+E  + FGLA L+QLRGRVGR    
Sbjct: 404 LDHAMDEFASGRAHILLCTTIVESGLDIPNVNTIIVEEVQQFGLASLYQLRGRVGRAGRQ 463

Query: 590 SSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQSG 640
           +   + +     +  ++  RL  L+      +GF +AE D+  R  G + G KQSG
Sbjct: 464 AYAYMFHAERGGMHNDAQERLLALEECCGLGEGFRLAERDMAIRGVGTLFGEKQSG 519


>gi|325838706|ref|ZP_08166621.1| transcription-repair coupling factor [Turicibacter sp. HGF1]
 gi|325490756|gb|EGC93063.1| transcription-repair coupling factor [Turicibacter sp. HGF1]
          Length = 1176

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/392 (33%), Positives = 218/392 (55%), Gaps = 24/392 (6%)

Query: 261 IAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           I Q    N  P+  T+ Q  A+ +I +DM Q + M R+L GDVG GKT VA+ A   AV 
Sbjct: 606 IEQHAFENAFPYVETEDQLKAVAEIKEDMEQPHPMDRLLIGDVGYGKTEVAMRAAFKAVM 665

Query: 320 AGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            G Q   +AP  IL +QHYE F+ ++ ++  + + ++   +    +++ L  I  G+  I
Sbjct: 666 DGKQVAYLAPTTILTKQHYESFVSRF-KDFPVKIGLLNRYVSLKEQQELLTNIKSGKIDI 724

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           ++GTH L    +++  L L+I+DE+ RFGV+ + K+ +  T   VL +TATPIPRTL ++
Sbjct: 725 VVGTHRLLSKDVKFKDLGLLIIDEEQRFGVEHKEKIKEFKTEVDVLTLTATPIPRTLQMS 784

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--E 494
            +G   +S I   P  R P++T ++  +   I + IER    L+   + +++  ++   E
Sbjct: 785 MIGIRSLSLIETPPMNRYPVQTYVLEEHDGVIRDAIER---ELARDGQVFYLYNRVSDIE 841

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           K+ +  + +V           + +   HG+MS    E  M  F++    +L+ TT+IE G
Sbjct: 842 KRAARIKKLVP---------DAIVEYAHGQMSKEQLEQTMADFEDKKFNVLVCTTIIETG 892

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLK 612
           ID+ +A+ +II ++   GL+QL+QLRGRVGR + I+    +Y  +  L++N+  RL  +K
Sbjct: 893 IDIPNANTLIISDSYRLGLSQLYQLRGRVGRSDRIAYAYCMYPKNKVLTENAEKRLQTIK 952

Query: 613 N-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641
             TE   GF IA  DL  R  G++LG +Q G 
Sbjct: 953 EFTELGSGFKIAMRDLAIRGAGDMLGAQQYGF 984


>gi|313900859|ref|ZP_07834349.1| transcription-repair coupling factor [Clostridium sp. HGF2]
 gi|312954279|gb|EFR35957.1| transcription-repair coupling factor [Clostridium sp. HGF2]
          Length = 1151

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/429 (31%), Positives = 228/429 (53%), Gaps = 19/429 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A    LA ++  L   +   + IG     +  + ++   +  +  T  Q 
Sbjct: 551 EWEKTKKKVSAKIAELADRLVKLYASRD--ENIGHAFAKDTPLQKQFEEDFEYELTPDQA 608

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A+++I QDM     M R+L GDVG GKT VA  A   AV  G Q   + P  IL+ QHY
Sbjct: 609 RAVQEIKQDMESAKPMDRLLCGDVGFGKTEVAARAAFKAVAEGRQVAFLCPTTILSLQHY 668

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +   K  +N  + + ++   +  + ++  +  +  G   I+IGTH L    I +  L L+
Sbjct: 669 KTFMKRFRNFPVNIAVVNRFIKPSDQKHIIHDLKEGNVDILIGTHRLLSKDIVFKDLGLL 728

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + K+ +   +  VL ++ATPIPRTL ++ +G   +S++   P  R P+
Sbjct: 729 VIDEEQRFGVEHKEKIKELKNSVDVLSLSATPIPRTLQMSLIGIRSLSQLETPPMNRMPV 788

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +I  N   + E+I+R    L+   + +++   ++E       +V  +          
Sbjct: 789 QTYVIEKNFQMVKEIIQR---ELARNGQVFYLYNNVKE-----IYNVARKLRDAMPEV-- 838

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I + HG+M+  D E VM  F +   ++L+ TT+IE GID+ +A+ I+IE+A+HFGL+QL
Sbjct: 839 EIGVAHGQMTREDIEDVMLQFTDNKYQVLVCTTIIETGIDIPNANTILIEDADHFGLSQL 898

Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           +Q++GRVGR + ++   L+Y P   LS+ +  RL  +K       G+ IA  DL  R  G
Sbjct: 899 YQIKGRVGRSDRLAYAYLMYSPQKQLSEIAMKRLKSIKEFTQLGSGYKIAMRDLTIRGAG 958

Query: 632 EILGIKQSG 640
           ++LG +Q+G
Sbjct: 959 DMLGPQQAG 967


>gi|121602625|ref|YP_989090.1| transcription-repair coupling factor [Bartonella bacilliformis KC583]
 gi|120614802|gb|ABM45403.1| transcription-repair coupling factor [Bartonella bacilliformis KC583]
          Length = 1163

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 135/406 (33%), Positives = 226/406 (55%), Gaps = 22/406 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q SAI  +L D+     M R++ GDVG GKT VA+ +   A   G Q  ++ P
Sbjct: 617  PYEETEDQMSAIDAVLDDLEAGKPMDRLICGDVGFGKTEVAIRSAFVAALNGYQTAVVVP 676

Query: 330  IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              +L++QHY+ FI ++ Q   + +  ++  +  A   K  + I+ G   I++GTHAL   
Sbjct: 677  TTLLSRQHYKTFIARF-QGLPVKIGHVSRLVKAAELTKVKKGISDGTIDIVVGTHALLSG 735

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            S+ + +L L+I+DE+  FGV+ +  L +  +  HVL ++ATPIPRTL L   G  ++S I
Sbjct: 736  SVNFSRLGLLIIDEEQHFGVKHKEHLKELKSDIHVLTLSATPIPRTLGLALSGVRELSLI 795

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            T  P  R  ++T I P + +  + E L      G +++++CP+I +       S VE + 
Sbjct: 796  TTPPIDRMAVRTFISPFDAL-VIRETLLREYYRGGQSFYVCPRISD------LSYVEEY- 847

Query: 509  SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L +H       I HG+M     + +M++F +G   +L++TT+IE G+D+  A+ +I+  
Sbjct: 848  -LKKHVPELKFVIAHGQMPAGQLDDIMNAFYDGKYDVLLSTTIIESGLDIPTANTLIVHR 906

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
            AE FGL+ L+QLRGRVGR ++ +  +  +  +  L+  +  RL +L++ +    GF +A 
Sbjct: 907  AEMFGLSALYQLRGRVGRSKQRAYALFTFPSNKVLTTAAQRRLKILQSLDTLGAGFQLAS 966

Query: 623  EDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
             D+  R  G  LG +QSG  K   F + Q  L +++ E+  K+ KH
Sbjct: 967  HDMDIRGSGNFLGEEQSGHIKEVGFELYQKMLEEAVSEL--KEGKH 1010


>gi|152991099|ref|YP_001356821.1| ATP-dependent DNA helicase RecG [Nitratiruptor sp. SB155-2]
 gi|151422960|dbj|BAF70464.1| ATP-dependent DNA recombinase RecG [Nitratiruptor sp. SB155-2]
          Length = 597

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 180/578 (31%), Positives = 277/578 (47%), Gaps = 67/578 (11%)

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
           +I L+FF+  T   K +F  G ++ + GK +K   ++ ++ P  +       N+ +    
Sbjct: 62  DIELIFFH-TTSYHKQMFQSGNRLYIEGKAQKNYGKLQIIQPKKV------ANYKIGRIF 114

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVL----PEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                 +  D+F+K+  + L++  +L    PE I K LL+             IH P   
Sbjct: 115 PQYRIAIRGDIFEKLKEKYLTKENLLAEGLPEEIVKHLLK-------------IHYPDPL 161

Query: 216 KDFEW------TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
               W      T    + L Y E  +  +  L  ++ ++K I        +  +  L  +
Sbjct: 162 FYEAWKQEGAITGKYLDALKYAESFS-YMKNLRQKRVYQKSIA----QYAQDPEPFLSTL 216

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF PT  Q+ AI DI +D+ +     R++ GDVGSGK+LV      A +    + ++MAP
Sbjct: 217 PFDPTSDQKRAIYDIYEDLKKGVAARRVIVGDVGSGKSLVMF--ATAFMNYPNKTILMAP 274

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA Q Y   KK+  N   I  + + N    H            AH  IGTHAL    
Sbjct: 275 TTILADQLYHEAKKFLPNEMNIALVTSTNKDFDH-----------NAHFFIGTHALLYTD 323

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQ----KATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   K  +V+VDEQHRFG  QR  L +       +PH    +ATPIPRT  +     +D 
Sbjct: 324 LP--KASVVMVDEQHRFGTNQRNLLKKMVECNKGSPHFFQFSATPIPRTKAMMQSALVDY 381

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I E P  +K I T +I  +   E+++ +K  + +  +   + P +EE ++  ++S+ E
Sbjct: 382 SLIKEMPFQKKII-TKVISRDSFKELLKHIKSEVEKRHQVLVVYPLVEESEKYGYKSLQE 440

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK-NGTCKLLIATTVIEVGIDVVDASIII 564
             +    +F   + + HG+  D +KE V+  F+ NG   +L+ATTVIEVGI +   S I+
Sbjct: 441 AKDFWMRYF-DGVYVTHGK--DKEKEEVLKEFRENGN--ILLATTVIEVGISLPRLSTIV 495

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I  AE+ GLA LHQLRGRV R      C L  +   +KN   RL    +  +GF IAE D
Sbjct: 496 IVGAENLGLATLHQLRGRVSRTGLKGYCFLYTND--AKNE--RLQKFASITNGFEIAELD 551

Query: 625 LKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARK 661
           L  RK G+I+ G +QSG   F      L  +++E A+K
Sbjct: 552 LMYRKSGDIIHGREQSG-KTFKWLHMALDKAIVEEAKK 588


>gi|225551744|ref|ZP_03772687.1| transcription-repair coupling factor [Borrelia sp. SV1]
 gi|225371539|gb|EEH00966.1| transcription-repair coupling factor [Borrelia sp. SV1]
          Length = 1125

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 210/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q  AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P
Sbjct: 580 PYNETPDQIKAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE      ++++E+ 
Sbjct: 760 IPPQNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIEKL 814

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III N
Sbjct: 815 TPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINN 869

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA 
Sbjct: 870 ANKFGLAQLYQLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAM 929

Query: 623 EDLKQRKEGEILGIKQSG 640
           +D++ R  G +LG +Q G
Sbjct: 930 KDMEIRGVGNLLGREQHG 947


>gi|220926926|ref|YP_002502228.1| transcription-repair coupling factor [Methylobacterium nodulans ORS
            2060]
 gi|219951533|gb|ACL61925.1| transcription-repair coupling factor [Methylobacterium nodulans ORS
            2060]
          Length = 1190

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 141/407 (34%), Positives = 221/407 (54%), Gaps = 39/407 (9%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ QE+AI   L D++    M R++ GDVG GKT VAL A      +G Q  ++ P
Sbjct: 638  PYEETEDQEAAIAATLGDLTAGRPMDRLICGDVGFGKTEVALRAAFVTAISGKQVAVVVP 697

Query: 330  IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHR-------RKALERIAHGQAHIIIG 381
              +LA+QHY  F +++        + +  N+ QA R       +K  E +A+G   I++G
Sbjct: 698  TTLLARQHYRTFAERF--------KALPVNIAQASRFVSNTELKKVREGLANGTVDIVVG 749

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            THAL   ++ +  L L+I+DE+  FGV  + +L    +  HVL ++ATPIPRTL L   G
Sbjct: 750  THALLAKTVAFRDLGLIIIDEEQHFGVAHKERLKALRSEVHVLTLSATPIPRTLQLAMTG 809

Query: 442  DIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              ++S I   P  R  ++T + P +   I E + R +     G +A+++ P+I+   E  
Sbjct: 810  VRELSIIATPPVDRLAVRTFVTPFDPLLIREALLRERY---RGGQAFYVVPRIDHLDE-- 864

Query: 500  FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                V+RF    E   + + I HG+M+    E VM +F  G   +L++TT++E G+D+  
Sbjct: 865  ----VKRFLD-REMPEAKVGIAHGQMAAGQLEDVMTAFYEGRFDILLSTTIVESGLDIPT 919

Query: 560  ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTE 615
            A+ +I+  A+ FGLAQL+QLRGRVGR +  +    L+  P    L+  +  RL VL++ +
Sbjct: 920  ANTLIVHRADMFGLAQLYQLRGRVGRSK--ARAYALFTTPENKTLTVQAERRLKVLQSLD 977

Query: 616  D---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
                GF +A  DL  R  G +LG +QSG  K +    EL+  +LE A
Sbjct: 978  TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEV--GYELYQQMLEDA 1022


>gi|116252138|ref|YP_767976.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
            viciae 3841]
 gi|115256786|emb|CAK07876.1| putative transcription-repair coupling factor [Rhizobium
            leguminosarum bv. viciae 3841]
          Length = 1166

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/419 (31%), Positives = 222/419 (52%), Gaps = 28/419 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ QE+AI+ +  D+     M R++ GDVG GKT VAL A   A   G Q  I+ P
Sbjct: 620  PYDETEDQENAIEAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGAQVAIVVP 679

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L++QH++      +   + ++  +  +         + +A G+  I++GTHAL    
Sbjct: 680  TTLLSRQHFKTFSDRFRGLPVRIQQASRLVGAKELALTKKEVAEGKTDIVVGTHALLGAG 739

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I++  L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT
Sbjct: 740  IKFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLIT 799

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R  ++T I P + +  + E L      G +++++CP++ +               
Sbjct: 800  TPPVDRMAVRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLAD------------LED 846

Query: 510  LHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +H    S      +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I
Sbjct: 847  VHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLI 906

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTED---GF 618
            +  A+ FGLAQL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF
Sbjct: 907  VHRADMFGLAQLYQLRGRVGR-SKVRAFALFTLPVNKVLTATAERRLKVLQSLDTLGAGF 965

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
             +A  DL  R  G +LG +QSG  K   F + Q  L +++ E+   D  H     P ++
Sbjct: 966  QLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGWSPQIS 1024


>gi|313904443|ref|ZP_07837820.1| transcription-repair coupling factor [Eubacterium cellulosolvens 6]
 gi|313470779|gb|EFR66104.1| transcription-repair coupling factor [Eubacterium cellulosolvens 6]
          Length = 1128

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 146/440 (33%), Positives = 236/440 (53%), Gaps = 21/440 (4%)

Query: 210 HNPR--KAKDFEW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
           H P+  K    EW  + +R R A  ++    +AL   R+Q K   G     +    ++  
Sbjct: 518 HKPKLNKLGGAEWHKTKSRVRGAVKDIARDLVALYAAREQAK---GYCYGEDTVWQREFE 574

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
              PF  T+ Q  AI D  +DM     M R++ GDVG GKT +A+ A   AV+   Q V+
Sbjct: 575 EMFPFEETEDQLQAIADTKRDMESSRVMDRLVCGDVGYGKTEIAIRAAFKAVQENKQVVL 634

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  ILAQQH+    +  ++  + +++++     A ++K +E +  G   I+IGTH + 
Sbjct: 635 LCPTTILAQQHFTTFVQRMKDYPVQIDMLSRFRTAAQQKKTIEAVRTGTVDILIGTHRVL 694

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              ++Y  L L+IVDE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S
Sbjct: 695 SKDVKYKDLGLLIVDEEQRFGVTHKEKIKQLKQNVDVLTLTATPIPRTLHMSMIGIRDMS 754

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            + E P  R PI+T ++  +  +E+I E L   L+   +A+ +  +++         + +
Sbjct: 755 VLEEPPMDRLPIQTYVMEYD--EEMIREALSRELARDGQAFVVYNRVK-----GIAEMTD 807

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           R  +L        A  HG+M + + E +M  F NG   +L+ATT+IE G+D+ + + ++I
Sbjct: 808 RIRNLLPDAVVEYA--HGKMKETELEQLMYRFINGEIDVLVATTIIETGMDISNVNTMVI 865

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            +A+  GL+QL+QLRGRVGR    S   L+Y     L +++  RL  ++  TE   G  I
Sbjct: 866 CDADRLGLSQLYQLRGRVGRSNRNSYAFLMYKKDKMLKEDAEKRLHAIREFTELGSGVKI 925

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A+ DL+ R  G +LG +QSG
Sbjct: 926 AKRDLEIRGAGNLLGAEQSG 945


>gi|329960904|ref|ZP_08299183.1| transcription-repair coupling factor [Bacteroides fluxus YIT 12057]
 gi|328532190|gb|EGF58994.1| transcription-repair coupling factor [Bacteroides fluxus YIT 12057]
          Length = 1164

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/409 (32%), Positives = 218/409 (53%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  +  D+  DM     M R++ 
Sbjct: 566 LIKLYSQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSKSTADVKADMESARPMDRLVC 625

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT +A+ A   AV    Q  ++ P  +LA QH++  K+  +     V+ ++   
Sbjct: 626 GDVGFGKTEIAVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKERLKGLPCRVDYLSRAR 685

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  ++ ++ G  +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 686 TAAQAKAVVKGLSEGDVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQLKV 745

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I   P  R PI+T +   N  +EVI + +   
Sbjct: 746 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFN--EEVIADAVNFE 803

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +S   + +++  +I    E   ++++ER           + I HG+M   + E ++  F 
Sbjct: 804 MSRNGQVFFVNNRISNLAE--LKAMIERRIP-----DCRVCIGHGQMEPAELEKIILDFV 856

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  P
Sbjct: 857 NYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-AP 915

Query: 599 PLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PLS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 916 PLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 964


>gi|241204639|ref|YP_002975735.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240858529|gb|ACS56196.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 1166

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 131/419 (31%), Positives = 222/419 (52%), Gaps = 28/419 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ QE+AI+ +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P
Sbjct: 620  PYDETEDQENAIEAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGAQVAVVVP 679

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L++QH++      +   + ++  +  +         + +A G+  I++GTHAL    
Sbjct: 680  TTLLSRQHFKTFSDRFRGLPVRIQQASRLVGAKELALTKKEVAEGKTDIVVGTHALLGAG 739

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I++  L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT
Sbjct: 740  IKFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLIT 799

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R  ++T I P + +  + E L      G +++++CP++ +               
Sbjct: 800  TPPVDRMAVRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLAD------------LED 846

Query: 510  LHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +H    S      +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I
Sbjct: 847  VHAFLQSDLPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLI 906

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTED---GF 618
            +  A+ FGLAQL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF
Sbjct: 907  VHRADMFGLAQLYQLRGRVGR-SKVRAFALFTLPVNKVLTATAERRLKVLQSLDTLGAGF 965

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
             +A  DL  R  G +LG +QSG  K   F + Q  L +++ E+   D  H     P ++
Sbjct: 966  QLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGWSPQIS 1024


>gi|103487138|ref|YP_616699.1| transcription-repair coupling factor [Sphingopyxis alaskensis RB2256]
 gi|98977215|gb|ABF53366.1| transcription-repair coupling factor [Sphingopyxis alaskensis RB2256]
          Length = 1194

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 139/401 (34%), Positives = 221/401 (55%), Gaps = 27/401 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q+ AI D+L DM+    M R++ GDVG GKT VAL     A  AG Q  ++ P
Sbjct: 642  PYQETDDQDRAIGDVLADMASGRPMDRLVCGDVGFGKTEVALRPAFVAAMAGVQVAVVVP 701

Query: 330  IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              +LA+QHY  F+ ++ +   I +  ++  +P A  +K  E +A GQ  I++GTHA+   
Sbjct: 702  TTLLARQHYSNFVDRF-KGFPIHIGRLSRLVPAAEAQKTREGLASGQIDIVVGTHAVIAK 760

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            S+++  L LVIVDE+ RFGV  + +L Q     HVL +TATPIPRTL +   G  ++S I
Sbjct: 761  SVEFKNLGLVIVDEEQRFGVVHKERLKQLKADVHVLTLTATPIPRTLQMAMSGLRELSVI 820

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEE--KKESNFRSV 503
               P  R  ++T + P    D V+ R + +L E   G +++++ P+I++    E   R+ 
Sbjct: 821  QTPPVDRLAVRTYVAP---WDPVVIR-EALLREHDRGGQSFFVTPRIKDLPDIEEYLRTR 876

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            V     +         + HG+M   + E  M +F +    +L++TT++E G+D+  A+ +
Sbjct: 877  VPEIKYV---------VAHGQMGAQEVEERMSAFYDRKYDVLVSTTIVESGLDIPSANTL 927

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GF 618
            I+  A+ FGLAQL+QLRGRVGR +  +   L       ++  +  RL +L + +    GF
Sbjct: 928  IVHRADRFGLAQLYQLRGRVGRSKTRAYAYLTTPDGGAITDTAEKRLKLLGDLDTLGAGF 987

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             +A  DL  R  G ++G +QSG  + +    EL+ S+LE A
Sbjct: 988  QLASHDLDIRGAGNLVGDEQSGHIREV--GFELYQSMLEEA 1026


>gi|57168600|ref|ZP_00367733.1| ATP-dependent DNA helicase RecG [Campylobacter coli RM2228]
 gi|57020105|gb|EAL56782.1| ATP-dependent DNA helicase RecG [Campylobacter coli RM2228]
          Length = 604

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 154/405 (38%), Positives = 220/405 (54%), Gaps = 23/405 (5%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+N+PFSPT+ Q +A+KDI QD+  K    R++ GDVG GKTLV L   AA +    QA+
Sbjct: 219 LKNLPFSPTRDQLNALKDIEQDLGSKEAKRRVIMGDVGCGKTLVLL--GAALMVYPKQAI 276

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA Q YE  KK       I+ I  G      + K LE     +A++IIGTHAL
Sbjct: 277 LMAPTSILANQLYEEAKKLLPEFVDILFIKGGK-----KEKDLEEKIK-KANLIIGTHAL 330

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQR---LKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               +Q +  +LV++DEQHRFG  QR     L +   APH +  +ATPIPRTL +     
Sbjct: 331 IH--LQSHNAVLVMIDEQHRFGSAQRQQIYSLNENELAPHFIQFSATPIPRTLSMIQSEL 388

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           ++ S I E P  +K I T+ I      ++ E++K  +++  +   I P +    +  + S
Sbjct: 389 LNFSFIKEMPF-KKDITTLCIQNEGFAKLSEKIKEEIAQNHQIIIIYPLVNPSDKIPYLS 447

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +E+     E     + + HG+  D  K+ +++ F++    +L++TTV+EVGI +   S 
Sbjct: 448 -LEQARRYWEDNYEKVFVTHGK--DKQKDEILERFRD-EGNILLSTTVVEVGISLPRLST 503

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I  AE  GLA LHQLRGRVGR    S+C L       K   +RL    +T DGF IAE
Sbjct: 504 IVIVGAERLGLATLHQLRGRVGRVGLKSTCYLYTK---LKEIPSRLKEFASTLDGFKIAE 560

Query: 623 EDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            DLK R  G++L G  Q G  +F        + +LE A+KD   I
Sbjct: 561 LDLKNRLSGDLLDGFIQHG-NEFKYFDFSKDEYILEKAKKDLMEI 604


>gi|196229584|ref|ZP_03128449.1| transcription-repair coupling factor [Chthoniobacter flavus
           Ellin428]
 gi|196226816|gb|EDY21321.1| transcription-repair coupling factor [Chthoniobacter flavus
           Ellin428]
          Length = 1082

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 135/408 (33%), Positives = 215/408 (52%), Gaps = 17/408 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  + +  +G     + K  ++   +  F  T  Q +AI     DM  +  M R++ 
Sbjct: 492 LLAVHAERETAVGYAFPPDNKWQREFESSFLFKETVDQLTAIAASKADMESERPMDRLIC 551

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   +V  G Q  I+ P  +LA+QHY   ++   +  + VE+++   
Sbjct: 552 GDVGFGKTEVAIRAAFKSVMGGKQVAILVPTTVLAEQHYRNFRERMSDYPVTVELLSRFR 611

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A +RK ++ +A G+  I++GTH L    I +  L LV++DE+ RFGV  + +  +   
Sbjct: 612 TAAEQRKTVQGLADGRVDIVVGTHRLISKDILFKDLGLVVIDEEQRFGVLHKERFKEMFK 671

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKV 477
              +L ++ATPIPRTL L+ +G  D+S I   P  R P +T+I P +   I + I R   
Sbjct: 672 LVDMLTLSATPIPRTLYLSLMGAKDMSTIETPPLNRIPTETLICPYDERIIRDAINR--- 728

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            LS   + Y++  ++   +    R  +++         +   I HG+M + + E VM  F
Sbjct: 729 ELSRQGQVYFLHNRVHSIE--MMRDKIKKLCP-----KARCVIGHGQMDEHELEDVMHEF 781

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G   +LI+TT+IE G+D+ +A+ III+ A+ FGLA L+QLRGRVGR +  +   LL  
Sbjct: 782 VSGAADVLISTTIIESGLDIPNANTIIIDRADRFGLADLYQLRGRVGRAQHKAYAYLLLP 841

Query: 598 PPL--SKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             +     +  R++ +K       GF IA  DL+ R  G ILG  QSG
Sbjct: 842 REMMTQGEARRRINAIKQYSSLGAGFKIAMRDLEIRGAGNILGTAQSG 889


>gi|238650718|ref|YP_002916571.1| transcription-repair coupling factor [Rickettsia peacockii str.
           Rustic]
 gi|238624816|gb|ACR47522.1| transcription-repair coupling factor [Rickettsia peacockii str.
           Rustic]
          Length = 1122

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 142/439 (32%), Positives = 239/439 (54%), Gaps = 35/439 (7%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           +IAL L++   K+++    +VE  + +  K   N PFS T+ Q  AI DI +D+     M
Sbjct: 541 EIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAINDIKEDLRNGMLM 600

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHY----EFIKKYTQ 346
            R++ GDVG GKT VA+ A+    ++      Q  ++ P  IL  QH+    E  K +  
Sbjct: 601 DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGL 660

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           N + +  +I+    +  R +    +  G+ +IIIGTH+L   +I+++ L L+I+DE+  F
Sbjct: 661 NIKQLSSVISSKEAKIIRSE----LESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHF 716

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R+ + T ++P  
Sbjct: 717 GVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRREVHTSVMP-- 774

Query: 467 RIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             D VI R   +L E   G +++++ P+I++        + ++   +    +  IA  +G
Sbjct: 775 -FDPVIIR-DALLREHFRGGRSFYVVPRIKD-----IEDIAKQLKQIVPELSYKIA--YG 825

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M+    + VM  F  G   +L++TT+IE GID+ +A+ +II NA+  GL+QL+QLRGR+
Sbjct: 826 KMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLYQLRGRI 885

Query: 584 GRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQ 638
           GRG+      L    +  ++ +S   L +++N+     GF IA  D+  R  G ++G +Q
Sbjct: 886 GRGKMRGYAYLTVASNKKMTSHSLRCLEIIQNSCALGSGFTIANRDMDLRGFGNLIGEEQ 945

Query: 639 SGMPKFLIAQPELHDSLLE 657
           SG  K +    EL+  +LE
Sbjct: 946 SGQIKEV--GTELYQEMLE 962


>gi|325830839|ref|ZP_08164223.1| transcription-repair coupling factor [Eggerthella sp. HGA1]
 gi|325487246|gb|EGC89689.1| transcription-repair coupling factor [Eggerthella sp. HGA1]
          Length = 1161

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/382 (33%), Positives = 203/382 (53%), Gaps = 23/382 (6%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q +AI D+  DM     M R++ GDVG GKT VAL A   A +   Q +++ 
Sbjct: 614 FPYQETPDQLAAIADVKADMQSAKPMDRLVCGDVGFGKTEVALRAAFKATQDSKQVMVLC 673

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILAQQHY   K+  +   + VE+++     A +  AL+    G   +++GTH L   
Sbjct: 674 PTTILAQQHYTNFKERCEPFGVRVEVLSRFRTPAQQAAALKGFQEGDVDVLVGTHRLLSR 733

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +  + L LVI+DE+ RFGV  + ++     +  VL ++ATPIPRT+ ++  G  D+S I
Sbjct: 734 DVNPHDLGLVIIDEEQRFGVGHKEQMKNLRESIDVLTLSATPIPRTMQMSLSGVRDMSLI 793

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R+P++  +   +  D V   ++  L+ G + Y++  ++   +E+     V R  
Sbjct: 794 LTPPDERRPVEVHVGEWD-PDVVSGAIRRELARGGQVYYVSNRVRSMEEA-----VRRVT 847

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +      + + + HG+MS    E VM+ F  G   +L+ATT+IE GID    + +IIE++
Sbjct: 848 AAAGE--ARVGVAHGQMSKEQLERVMEDFSAGELDVLVATTIIESGIDNPHTNTLIIEDS 905

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY-------HPPLSKNSYTRLSVLKNTED---GF 618
           + +GLAQ++QL+GRVGR     SC   Y       H  L++ +  RL+ L    D   G 
Sbjct: 906 QRYGLAQMYQLKGRVGR-----SCTQAYAYFMFPEHMELTEEAAARLTALNEHTDLGSGM 960

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL+ R  G +LG +QSG
Sbjct: 961 RIAMRDLEIRGAGSLLGAEQSG 982


>gi|320530140|ref|ZP_08031210.1| transcription-repair coupling factor [Selenomonas artemidis F0399]
 gi|320137573|gb|EFW29485.1| transcription-repair coupling factor [Selenomonas artemidis F0399]
          Length = 1094

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 142/420 (33%), Positives = 222/420 (52%), Gaps = 30/420 (7%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  AI++I +DM  +  M R+L GDVG GKT VA+ A   A   G Q  ++ P
Sbjct: 549 PYEETEDQLRAIEEIKRDMESERPMDRLLCGDVGFGKTEVAVRAAFKAAMDGFQVAVLVP 608

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHY+       +    V+++        + + L  +  G+  I+IGTHA+   +
Sbjct: 609 TTVLAQQHYQTFAARFADFAPKVDVVCRFRTPREQAETLREVEEGRVDILIGTHAILNRT 668

Query: 390 -IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + + KL L+IVDE+ RFGV Q+ ++ + A    VL ++ATPIPRTL ++  G  D+S I
Sbjct: 669 RVHFRKLGLLIVDEEQRFGVTQKERIKEFAAGVDVLTLSATPIPRTLHMSLAGARDMSII 728

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
              PA R P+++ ++  +   +   IER    LS   + Y+I  +            VE 
Sbjct: 729 ETPPADRLPVQSYVVESSDAMMRGAIER---ELSRKGQVYFIYNR------------VES 773

Query: 507 FNSLHEHF-----TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            + + EH       + IA  HG+M++   E VM  F  G   +L+AT++IE GIDV +A+
Sbjct: 774 IDRMREHLLRLVPEARIATAHGQMNEDILEQVMMDFYEGHYDILLATSIIENGIDVANAN 833

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTED 616
            +II +A+ FGL+QL+Q+RGRVGR  +++     Y     LS+ +  RL  +K       
Sbjct: 834 TVIIYDADRFGLSQLYQMRGRVGRSAKMAFAYFTYRRDKVLSETAEKRLQAMKEFAQLGS 893

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           GF IA  DL+ R  G +LG +Q G         E++  LLE A    + +  + P++  V
Sbjct: 894 GFKIAMRDLEIRGAGSLLGAQQHG--HIAGVGFEMYVKLLEEAVAKRRGVAKESPEVEPV 951


>gi|257791044|ref|YP_003181650.1| transcription-repair coupling factor [Eggerthella lenta DSM 2243]
 gi|257474941|gb|ACV55261.1| transcription-repair coupling factor [Eggerthella lenta DSM 2243]
          Length = 1161

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/382 (33%), Positives = 203/382 (53%), Gaps = 23/382 (6%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q +AI D+  DM     M R++ GDVG GKT VAL A   A +   Q +++ 
Sbjct: 614 FPYQETPDQLAAIADVKADMQSAKPMDRLVCGDVGFGKTEVALRAAFKATQDSKQVMVLC 673

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILAQQHY   K+  +   + VE+++     A +  AL+    G   +++GTH L   
Sbjct: 674 PTTILAQQHYTNFKERCEPFGVRVEVLSRFRTPAQQAAALKGFQEGDVDVLVGTHRLLSR 733

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +  + L LVI+DE+ RFGV  + ++     +  VL ++ATPIPRT+ ++  G  D+S I
Sbjct: 734 DVNPHDLGLVIIDEEQRFGVGHKEQMKNLRESIDVLTLSATPIPRTMQMSLSGVRDMSLI 793

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R+P++  +   +  D V   ++  L+ G + Y++  ++   +E+     V R  
Sbjct: 794 LTPPDERRPVEVHVGEWD-PDVVSGAIRRELARGGQVYYVSNRVRSMEEA-----VRRVT 847

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +      + + + HG+MS    E VM+ F  G   +L+ATT+IE GID    + +IIE++
Sbjct: 848 AAAGE--ARVGVAHGQMSKEQLERVMEDFSAGELDVLVATTIIESGIDNPHTNTLIIEDS 905

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY-------HPPLSKNSYTRLSVLKNTED---GF 618
           + +GLAQ++QL+GRVGR     SC   Y       H  L++ +  RL+ L    D   G 
Sbjct: 906 QRYGLAQMYQLKGRVGR-----SCTQAYAYFMFPEHMELTEEAAARLTALNEHTDLGSGM 960

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL+ R  G +LG +QSG
Sbjct: 961 RIAMRDLEIRGAGSLLGAEQSG 982


>gi|33597889|ref|NP_885532.1| transcription-repair coupling factor [Bordetella parapertussis
           12822]
 gi|33574318|emb|CAE38652.1| transcription-repair coupling factor [Bordetella parapertussis]
          Length = 1151

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 200/377 (53%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q +AI+ ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++ P 
Sbjct: 608 FEETPDQAAAIQAVIMDMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVANGKQVALLCPT 667

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH +       +  + V  ++          A+E I  G+  I+IGTH +    +
Sbjct: 668 TLLAEQHAQTFSDRFADWPVRVVELSRFRSAKEVAAAVEGINDGRVDIVIGTHKILSKDV 727

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I  
Sbjct: 728 RFKRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIAT 787

Query: 451 KPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R  IKT    + R D   + E L   L  G + Y++  ++E     N R+ +E   
Sbjct: 788 APHKRLAIKTF---VRREDGSTIREALLRELKRGGQVYFLHNEVETIH--NRRARLEELV 842

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                  + IA+ HG+M + + E VM  F      +L+ TT+IE GID+  A+ I+I  A
Sbjct: 843 P-----EARIAVAHGQMPERELEQVMKGFYQQRHNVLLCTTIIETGIDIPTANTIVIHRA 897

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLAQLHQLRGRVGR    +   LL      ++ N+  RL  ++  E+   GF +A  
Sbjct: 898 DRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITNNAKKRLEAIQAMEELGSGFYLAMH 957

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  GEILG  QSG
Sbjct: 958 DLEIRGTGEILGDSQSG 974


>gi|209885332|ref|YP_002289189.1| transcription-repair coupling factor [Oligotropha carboxidovorans
            OM5]
 gi|209873528|gb|ACI93324.1| transcription-repair coupling factor [Oligotropha carboxidovorans
            OM5]
          Length = 1171

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 140/437 (32%), Positives = 233/437 (53%), Gaps = 26/437 (5%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +AG +  +   +Q  +    P++ +G +  +     P   T+ Q +AI   L D++    
Sbjct: 585  IAGDLIKIAAERQLHEAPKFPLH-QG-LYDEFCARFPHDETEDQLTAINASLDDLNAGKP 642

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA+QH +      +   + + 
Sbjct: 643  MDRLICGDVGFGKTEVALRAAFAVAMEGRQVAVVVPTTLLARQHAKNFTDRFRGFPVKIA 702

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
              +  +     R+  + +A G   I++GTHAL   +I++  L L+IVDE+  FGV  + +
Sbjct: 703  QASRLVSAKELRETKKGLAEGNIDIVVGTHALLGKTIKFKNLGLIIVDEEQHFGVSHKER 762

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEV 471
            L Q     HVL ++ATPIPRTL L   G  D+S I   P  R  ++T + P +   I E 
Sbjct: 763  LKQLRAEVHVLTLSATPIPRTLQLALTGVRDLSIIASPPVDRLAVRTFVAPFDPLMIREA 822

Query: 472  IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
            + R +     G +A+++CP+IE+  E+         + L ++     +A+ HG+M+    
Sbjct: 823  LLRERY---RGGQAFYVCPRIEDLAEAK--------DFLDKNVPEMKVAVAHGQMAPGVI 871

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E +M +F +G   +L++TT++E G+D+ +A+ +I+  A+ FGLAQL+QLRGRVGR  ++ 
Sbjct: 872  EDIMSAFYDGKFDILLSTTIVESGLDIPNANTLIVHRADMFGLAQLYQLRGRVGR-SKLR 930

Query: 591  SCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK- 643
            +  L   P    ++  +  RL VL++ E+   GF +A  DL  R  G +LG +QSG  K 
Sbjct: 931  AYALFTLPAQRKITAQAERRLKVLQSLENLGAGFQLASHDLDIRGAGNLLGEEQSGHIKE 990

Query: 644  --FLIAQPELHDSLLEI 658
              F + Q  L + +L +
Sbjct: 991  VGFELYQQMLEEEILNL 1007


>gi|197124848|ref|YP_002136799.1| transcription-repair coupling factor [Anaeromyxobacter sp. K]
 gi|196174697|gb|ACG75670.1| transcription-repair coupling factor [Anaeromyxobacter sp. K]
          Length = 1241

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 142/424 (33%), Positives = 228/424 (53%), Gaps = 31/424 (7%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNR-------MLRILQGDVGSGKTLVALIAMAAAVEA 320
              P+  T  Q  AI+D+++DM +  +       M R++ GDVG GKT VA+ A   AV A
Sbjct: 634  EFPWEETPDQAKAIEDVVRDMRKGRQGPAAAAPMDRLVCGDVGYGKTEVAMRAAMLAVLA 693

Query: 321  GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              Q  ++ P  +LA QH    ++  +   + +E ++        ++AL+  A G+  I++
Sbjct: 694  KKQVAVLVPTTVLAAQHERTFRERFKGYPVRIEAVSRMRTADEVKQALKAAADGKVDIVV 753

Query: 381  GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            GTH L    + +  L LV+VDE+ RFGV  + +L +      VL +TATPIPRTL ++  
Sbjct: 754  GTHRLLAADVSFKDLGLVVVDEEQRFGVAHKERLKKLRKLVDVLTLTATPIPRTLHMSLA 813

Query: 441  GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            G  D+S I   P  R+ I+T ++  +    V E ++  L  G + +++         +  
Sbjct: 814  GVRDLSIIATPPEDRRAIRTFVMKFDPA-AVKEAIETELKRGGQVFFV--------HNRV 864

Query: 501  RSV--VERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            RS+  ++RF  L+E    + + + HG+M +   E VM  F +    +L+AT++IE G+D+
Sbjct: 865  RSIHAMQRF--LNELVPKARVGVAHGQMGEGKLEHVMTQFVDKELDVLLATSIIESGLDI 922

Query: 558  VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE 615
              A+ II+  A+HFGLAQL+Q+RGRVGR  E +   LL     P++K++  RL VL+   
Sbjct: 923  PSANTIIVNRADHFGLAQLYQIRGRVGRSRERAYAYLLVPARRPVTKDAQKRLEVLQRFS 982

Query: 616  D---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ--- 669
            +   GF IA  DL+ R  G +LG  QSG  +      EL+  LL+ A ++ K    +   
Sbjct: 983  ELGAGFKIASHDLELRGAGNLLGKDQSG--QIEAVGFELYQELLDEAVRELKGEAPREEI 1040

Query: 670  DPDL 673
            DPD+
Sbjct: 1041 DPDV 1044


>gi|297528423|ref|YP_003669698.1| transcription-repair coupling factor [Geobacillus sp. C56-T3]
 gi|297251675|gb|ADI25121.1| transcription-repair coupling factor [Geobacillus sp. C56-T3]
          Length = 1177

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 206/381 (54%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  +I++I +DM     M R+L GDVG GKT VAL A   A+  G Q   + P
Sbjct: 621 PYQETEDQLRSIEEIKRDMESDKPMDRLLCGDVGYGKTEVALRAAFKAIMDGKQVAFLVP 680

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE +++  Q   I V ++     +  + + ++ +  G   ++IGTH L    
Sbjct: 681 TTILAQQHYETVRERFQGFPINVGLLNRFRTKKQQAEIIKGLKDGTIDMVIGTHRLLSKD 740

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S I 
Sbjct: 741 VKFKDLGLLIIDEEQRFGVAHKEKIKQLKANIDVLTLTATPIPRTLHMSMIGVRDLSIIE 800

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNFRSVV 504
             P  R P++T ++        E IER    L+   + +++   IE+   K E   + V 
Sbjct: 801 TPPENRFPVQTYVMEYTPELAKEAIER---ELARDGQVFFLYNHIEDIDLKAEEIAQLVP 857

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           E          + +  +HGRMS+ + ES + +F  G   +L+ TT+IE GID+ + + +I
Sbjct: 858 E----------ARVTYVHGRMSETELESTILAFLEGQYDVLVTTTIIETGIDIPNVNTLI 907

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619
           + +A+  GL+QL+QLRGRVGR   ++     Y     L++ +  RL  +K  TE   GF 
Sbjct: 908 VYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEAAEKRLQAIKEFTELGSGFK 967

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           IA  DL  R  G ILG +Q G
Sbjct: 968 IAMRDLSIRGAGNILGAEQHG 988


>gi|160895086|ref|ZP_02075860.1| hypothetical protein CLOL250_02637 [Clostridium sp. L2-50]
 gi|156863517|gb|EDO56948.1| hypothetical protein CLOL250_02637 [Clostridium sp. L2-50]
          Length = 1174

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 139/436 (31%), Positives = 228/436 (52%), Gaps = 19/436 (4%)

Query: 211 NPRKAKDFEWTSPARERL-AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
           N   +KD+E T   R R+  +   +A ++  L  ++Q  +  G   + +    Q+     
Sbjct: 572 NKLGSKDWEKT---RSRVKGHVATIAKELVNLYAKRQASQ--GFCYSKDTIWQQEFEEMF 626

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q+ AI +   DM     M R++ GDVG GKT VA+ A   AV  G Q   + P
Sbjct: 627 PYEETDDQKKAIAETKADMESSKIMDRLICGDVGFGKTEVAIRAAFKAVYDGRQVAYLVP 686

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHY   K+  +   + + ++         R+ +  +  G+  I+IGTH L    
Sbjct: 687 TTILAQQHYNTFKERMKEFPVEIRLLCRFCTPKEVRETIADLKAGKVDIVIGTHRLLSKD 746

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + + +L L+I+DE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  D+S + 
Sbjct: 747 VAFKQLGLLIIDEEQRFGVTHKEKIKQMKTNVDVLTLTATPIPRTLHMSLIGIRDMSVLE 806

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           E P  R+ I+T ++ ++  + V E +K  L+   + Y++  ++     +N   V     S
Sbjct: 807 EAPVDRRAIQTYVMELDP-ELVKEAIKRELARDGQVYYVYNRV-----NNIEMVTSEIAS 860

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L     + +   HG+M +   E +M  F N    +L+ TT+IE G+D+ +A+ +II +A+
Sbjct: 861 LVPD--AVVEYAHGQMHERQLEDIMYRFINHEIDVLVTTTIIETGLDIPNANTMIIHDAD 918

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEED 624
            FGL+QL+QLRGRVGR +  +   L+Y     + + +  RL  ++   D   G  ++ +D
Sbjct: 919 TFGLSQLYQLRGRVGRSDRNAYAFLMYRRDKLIKETAEKRLKAIREFTDLGSGIKVSMKD 978

Query: 625 LKQRKEGEILGIKQSG 640
           L+ R  G ILG  QSG
Sbjct: 979 LEIRGAGNILGEDQSG 994


>gi|323485663|ref|ZP_08091001.1| hypothetical protein HMPREF9474_02752 [Clostridium symbiosum
           WAL-14163]
 gi|323401013|gb|EGA93373.1| hypothetical protein HMPREF9474_02752 [Clostridium symbiosum
           WAL-14163]
          Length = 1179

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 206/371 (55%), Gaps = 15/371 (4%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q  AI+   +DM  K  M R++ GDVG GKT +AL A   A++ G Q V + P  ILAQ
Sbjct: 632 DQLEAIESTKRDMESKKIMDRLICGDVGYGKTEIALRAAFKAIQEGKQVVYLVPTTILAQ 691

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY    +  ++  + V++++       +++ L  +  G   ++IGTH +    + +  L
Sbjct: 692 QHYNTFVQRMKDFPVRVDMMSRFRTATEQKRTLGDLKKGFVDVLIGTHRVLSKDVVFKNL 751

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S + E P  R
Sbjct: 752 GLLIIDEEQRFGVAHKEKIKQLKENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPVDR 811

Query: 456 KPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            PI+T ++  N  DE++ E +   L+ G + Y++  ++     +N   +     +L    
Sbjct: 812 LPIQTYVMEYN--DEMVREAIHRELARGGQVYYVYNRV-----NNIDEITNHVAALVPE- 863

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            +++   HG+M + + E +M  F NG   +L++TT+IE G+D+ +A+ III +A+  GL+
Sbjct: 864 -ANVTFAHGQMHEHELERIMLDFVNGDIDVLVSTTIIETGLDIPNANTIIIHDADRLGLS 922

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+Q+RGRVGR    S   L+Y     L + +  RL  ++  TE   G  IA  DL+ R 
Sbjct: 923 QLYQIRGRVGRSNRTSYAFLMYRRDKLLREEAEKRLQAIREFTELGSGIKIAMRDLELRG 982

Query: 630 EGEILGIKQSG 640
            G ILG +Q G
Sbjct: 983 AGNILGAEQHG 993


>gi|323706238|ref|ZP_08117805.1| transcription-repair coupling factor [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534402|gb|EGB24186.1| transcription-repair coupling factor [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 1166

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/431 (31%), Positives = 231/431 (53%), Gaps = 23/431 (5%)

Query: 219 EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +W+    R + A +++    I L   R+  K   G   + +    +      P+  T+ Q
Sbjct: 572 DWSKLKKRAKKAVEDIAKDLIKLYAKRQTMK---GYAFSKDTPWQKDFEEKFPYEETEDQ 628

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              I++I +DM     M R+L GDVG GKT VAL A   AV  G Q   + P  ILA+QH
Sbjct: 629 LRCIEEIKKDMESDKPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVAFLCPTTILAEQH 688

Query: 338 YE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           Y  F++++ ++  + +E+++       + + ++ +A G   I++GTH + Q+ +++  L 
Sbjct: 689 YNNFVQRF-KDFPVKIEMLSRFRSNKEQSQIIKMVADGTVDILVGTHKILQNDVKFKDLG 747

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+I+DE+ RFGV+ + K+ +      VL ++ATPIPRTL ++ +G  D+S +   P  R 
Sbjct: 748 LLIIDEEQRFGVKHKEKIKKLKENIDVLSLSATPIPRTLHMSLIGIRDMSVLENPPEDRY 807

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           P++T ++  N  D + + +   L  G + Y++  +I+          +ER  S+ +    
Sbjct: 808 PVQTYVVEFNE-DLIRDAILRELGRGGQVYFVYNRIDG---------IERIASILKELVP 857

Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + IA+ HG+M +   E +M  F N    +L+ TT+IE G+D+ + + II+ +++  GL+
Sbjct: 858 EARIAVAHGQMDEGKLEDIMIGFLNREYDILVCTTIIETGLDIPNVNTIIVYDSDKMGLS 917

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRK 629
           QL+QLRGRVGR   ++     Y     +S+ +  RL  +K  TE   GF IA  DL+ R 
Sbjct: 918 QLYQLRGRVGRSNRLAYAYFTYRKDKVISEVAEKRLEAIKEFTEFGSGFKIAMRDLEIRG 977

Query: 630 EGEILGIKQSG 640
            G +LG +Q G
Sbjct: 978 AGNLLGAEQHG 988


>gi|153007315|ref|YP_001381640.1| transcription-repair coupling factor [Anaeromyxobacter sp. Fw109-5]
 gi|152030888|gb|ABS28656.1| transcription-repair coupling factor [Anaeromyxobacter sp. Fw109-5]
          Length = 1229

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 208/386 (53%), Gaps = 22/386 (5%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNR-------MLRILQGDVGSGKTLVALIAMAAAVEA 320
              P+  T  Q  AI D+L+DM ++         M R++ GDVG GKT VA+ A   AV +
Sbjct: 629  EFPWEETPDQAKAIADVLRDMRKQRGGPAAAAPMDRLVCGDVGYGKTEVAMRAAMLAVLS 688

Query: 321  GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              Q  ++ P  +LA QH    ++  +   + +E I+        ++ L+ +A G+  +++
Sbjct: 689  RKQVAVLVPTTVLASQHERTFRERFKGYPVRIEAISRMKSAEEVKQVLKDVAAGKVDVVV 748

Query: 381  GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            GTH L    + + +L LV+VDE+ RFGV  + +L +      VL +TATPIPRTL ++  
Sbjct: 749  GTHRLLAADVSFKELGLVVVDEEQRFGVAHKERLKKLRRLVDVLTLTATPIPRTLHMSLA 808

Query: 441  GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            G  D+S I   P  R+ I+T ++  +    V E ++  L  G + Y++         +  
Sbjct: 809  GVRDLSIIATPPEDRRAIRTFVMKFD-PQVVRESIETELKRGGQVYFV--------HNRV 859

Query: 501  RSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            RS+      L +   S+ + + HG+M++   E VM  F      +L+AT++IE G+D+  
Sbjct: 860  RSIAAMQKFLADIVPSARVGVAHGQMAEGKLEEVMSRFVRKELDVLLATSIIESGLDIPS 919

Query: 560  ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616
            A+ II+  A+HFGLAQL+Q+RGRVGR  E +   LL     P++K++  RL VL+   + 
Sbjct: 920  ANTIIVNRADHFGLAQLYQIRGRVGRSRERAYAYLLVPARRPVTKDAQKRLEVLQRFSEL 979

Query: 617  --GFLIAEEDLKQRKEGEILGIKQSG 640
              GF IA  DL+ R  G +LG  QSG
Sbjct: 980  GAGFKIASHDLEIRGAGNLLGKDQSG 1005


>gi|317504984|ref|ZP_07962932.1| transcription-repair coupling factor [Prevotella salivae DSM 15606]
 gi|315663866|gb|EFV03585.1| transcription-repair coupling factor [Prevotella salivae DSM 15606]
          Length = 1153

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/409 (32%), Positives = 215/409 (52%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q + E G   + +  +  ++  +  +  T  Q  A +D+  DM  +  M R++ 
Sbjct: 553 LIKLYAQRRHERGHAFSGDSYLQHELEASFLYEDTPDQSKATQDVKADMESQRPMDRLVC 612

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   +     Q  ++ P  +LA QHY+  K   +   + V+ ++   
Sbjct: 613 GDVGFGKTEVAVRAAFKSACDSKQVAVLVPTTVLAYQHYQTFKNRLKGMPVRVDYLSRAR 672

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                ++ L  +  G+  I+IGTH L   +++++ L L+I+DE+ +FGV  + KL +  T
Sbjct: 673 TAKQTKQVLTDLEDGKIDILIGTHKLLGKAVKWHDLGLLIIDEEQKFGVSTKEKLRKLKT 732

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L M+ATPIPRTL  + +G  D+S I   P  R PI T +   +   EVI + +   
Sbjct: 733 NVDTLTMSATPIPRTLQFSLMGARDMSIIRTPPPNRYPIHTELATFSH--EVIADAINFE 790

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + Y++  +I          + E  N +H++     IAI HG+M   + E V+  F
Sbjct: 791 MSRNGQVYFVHDRI--------NGLQEIANLIHKYVPDCRIAIGHGQMPPEELEKVLMGF 842

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L++TT++E GID+ +A+ +II +A  FGL+ LHQ+RGRVGR    + C LL  
Sbjct: 843 MNYDYDVLLSTTIVENGIDISNANTMIINDAHRFGLSDLHQMRGRVGRSNRKAFCYLLAP 902

Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           P   L+  +  RL  L+N  +   GF +A +DL  R  G +LG +QSG 
Sbjct: 903 PKSSLTPEARRRLEALENFSELGSGFNLAMQDLDIRGAGNLLGAEQSGF 951


>gi|260575079|ref|ZP_05843080.1| transcription-repair coupling factor [Rhodobacter sp. SW2]
 gi|259022701|gb|EEW25996.1| transcription-repair coupling factor [Rhodobacter sp. SW2]
          Length = 1147

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 131/381 (34%), Positives = 207/381 (54%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AI D++ D+   + M R++ GDVG GKT VA+ A   A  AG Q  ++ P
Sbjct: 595 PYQETDDQLAAIADVVADLEAGSPMDRLIVGDVGFGKTEVAMRAAFVAALAGMQVAVVCP 654

Query: 330 IGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
             +LA+QHY    +  + +    + +   +T     A R      +A G   I IGTHAL
Sbjct: 655 TTLLARQHYRSFHDRFRGFPIEIRPLSRFVTAKDAAATRAG----LADGTVDICIGTHAL 710

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
              +I++  L L+++DE+  FGV  + +L +     HVL +TATPIPRTL L+  G  D+
Sbjct: 711 LAKAIRFKSLGLLVIDEEQHFGVTHKERLKEMRAEVHVLTLTATPIPRTLQLSLTGVRDL 770

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I   P  R  I+T +   + I  V E L      G +++++ P+I +  E      +E
Sbjct: 771 SIIATPPVDRLAIRTYVSEFDGI-TVREALLRERFRGGQSFYVVPRISDLPE------IE 823

Query: 506 RFNSLHEHFTSSIAII-HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            F  L +H      +I HG+++  D +  M++F +G   +L+AT+++E G+D+  A+ +I
Sbjct: 824 AF--LRDHVPEVTHVIAHGQLAAHDLDERMNAFYDGKYDVLLATSIVESGLDIPAANTMI 881

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619
           +  A+ FGL QL+Q+RGRVGR +  + C L   P  PL+  +  RL +L + +    GF 
Sbjct: 882 VHRADMFGLGQLYQIRGRVGRAKTRAYCYLTTKPRSPLTPQATKRLHLLGSLDSLGAGFN 941

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL  R  G +LG +QSG
Sbjct: 942 LASHDLDLRGAGNLLGEEQSG 962


>gi|317488238|ref|ZP_07946807.1| transcription-repair coupling factor [Eggerthella sp. 1_3_56FAA]
 gi|316912680|gb|EFV34220.1| transcription-repair coupling factor [Eggerthella sp. 1_3_56FAA]
          Length = 1022

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/382 (33%), Positives = 203/382 (53%), Gaps = 23/382 (6%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q +AI D+  DM     M R++ GDVG GKT VAL A   A +   Q +++ 
Sbjct: 475 FPYQETPDQLAAIADVKADMQSAKPMDRLVCGDVGFGKTEVALRAAFKATQDSKQVMVLC 534

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILAQQHY   K+  +   + VE+++     A +  AL+    G   +++GTH L   
Sbjct: 535 PTTILAQQHYTNFKERCEPFGVRVEVLSRFRTPAQQAAALKGFQEGDVDVLVGTHRLLSR 594

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +  + L LVI+DE+ RFGV  + ++     +  VL ++ATPIPRT+ ++  G  D+S I
Sbjct: 595 DVNPHDLGLVIIDEEQRFGVGHKEQMKNLRESIDVLTLSATPIPRTMQMSLSGVRDMSLI 654

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R+P++  +   +  D V   ++  L+ G + Y++  ++   +E+     V R  
Sbjct: 655 LTPPDERRPVEVHVGEWD-PDVVSGAIRRELARGGQVYYVSNRVRSMEEA-----VRRVT 708

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +      + + + HG+MS    E VM+ F  G   +L+ATT+IE GID    + +IIE++
Sbjct: 709 AAAGE--ARVGVAHGQMSKEQLERVMEDFSAGELDVLVATTIIESGIDNPHTNTLIIEDS 766

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY-------HPPLSKNSYTRLSVLKNTED---GF 618
           + +GLAQ++QL+GRVGR     SC   Y       H  L++ +  RL+ L    D   G 
Sbjct: 767 QRYGLAQMYQLKGRVGR-----SCTQAYAYFMFPEHMELTEEAAARLTALNEHTDLGSGM 821

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  DL+ R  G +LG +QSG
Sbjct: 822 RIAMRDLEIRGAGSLLGAEQSG 843


>gi|119715169|ref|YP_922134.1| transcription-repair coupling factor [Nocardioides sp. JS614]
 gi|119535830|gb|ABL80447.1| transcription-repair coupling factor [Nocardioides sp. JS614]
          Length = 1224

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 141/430 (32%), Positives = 222/430 (51%), Gaps = 21/430 (4%)

Query: 219  EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +WT    R R A  E+ A  I L   R+  +   G     +    +++    PF  T  Q
Sbjct: 615  DWTKRKNRARKAVREIAAELIKLYAARQATR---GHAFGPDTPWQRELEDAFPFHETPDQ 671

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             S + ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L  QH
Sbjct: 672  LSTVDEVKGDMMRTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVTQH 731

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
                 +      +I++ ++     A  R+ +  +A G   I++GTH L    I++  L L
Sbjct: 732  LSTFAERMSGFPVILKALSRFQTDAEAREVIAAMADGSVDIVVGTHRLLNPDIRFKDLGL 791

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +IVDE+ RFGV+ + ++ +  T+  VL M+ATPIPRTL +   G  ++S IT  P  R P
Sbjct: 792  IIVDEEQRFGVEHKEQMKRLRTSVDVLSMSATPIPRTLEMAITGIREMSTITTPPEERHP 851

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
            + T +        V    + +L EG + ++I  ++   EK  +  + +V           
Sbjct: 852  VLTYVGAYEDRQIVAAVRRELLREG-QVFYIHNRVSSIEKAAARIKELVPE--------- 901

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + +A  HG+M +   E VM  F      +L+ TT++E G+DV +A+ +IIE A+  GL+Q
Sbjct: 902  ARVATAHGQMGEHQLEQVMLDFWEKRFDVLVCTTIVESGLDVSNANTMIIERADTLGLSQ 961

Query: 576  LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
            LHQLRGRVGR  E +    LY P  PL++ ++ RL+ L    D   G  IA +DL+ R  
Sbjct: 962  LHQLRGRVGRSRERAYAYFLYPPEKPLTETAHERLATLAQHSDLGGGMAIAMKDLEIRGA 1021

Query: 631  GEILGIKQSG 640
            G +LG +QSG
Sbjct: 1022 GNLLGGEQSG 1031


>gi|288928499|ref|ZP_06422346.1| transcription-repair coupling factor [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288331333|gb|EFC69917.1| transcription-repair coupling factor [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 1134

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/401 (33%), Positives = 209/401 (52%), Gaps = 17/401 (4%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           + E G   + +  +  ++  +  +  T  Q  A  ++  DM +   M R++ GDVG GKT
Sbjct: 543 RTERGFAFSHDSFMQHELEASFLYEDTPDQLKATTEVKADMERARPMDRLVCGDVGFGKT 602

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A     Q  +M P  +LA QH++   K  +N  + V+ ++        R+ 
Sbjct: 603 EVAIRAAFKAACDSKQVAVMVPTTVLAFQHFKTFSKRLENLPVRVDYLSRARSAKQTRQV 662

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L+ +A G+  IIIGTH L   +++++ L L+I+DE+ +FGV  + KL    T    L M+
Sbjct: 663 LDDLAAGKIDIIIGTHKLIGKTVKWHDLGLLIIDEEQKFGVSTKEKLRTLKTNVDTLTMS 722

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL  + +G  D+S +   P  R PI T I   +    V E +   +S   + Y+
Sbjct: 723 ATPIPRTLQFSLMGARDMSVMRTPPPNRHPIHTEIATFDGA-FVAEAINFEMSRNGQVYF 781

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +  +I         ++ E  N + +H     + I HG+M   D E+ +  F N    +L+
Sbjct: 782 VNDRIA--------NLPELANIIRKHVPDCRVVIAHGQMKPEDLENALIDFMNHEYDVLL 833

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---N 603
           +T++IE GID+ +A+ II+ +A   GL+ LHQ+RGRVGR    + C LL  PPLS    +
Sbjct: 834 STSIIENGIDISNANTIIVNHAHKVGLSDLHQMRGRVGRSNRKAFCYLL-APPLSALTPD 892

Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           +  RL  L+   D   GF IA +DL  R  G +LG +QSG 
Sbjct: 893 ARRRLEALETFSDLGSGFNIAMQDLDIRGAGNLLGAEQSGF 933


>gi|293375931|ref|ZP_06622192.1| transcription-repair coupling factor [Turicibacter sanguinis PC909]
 gi|292645453|gb|EFF63502.1| transcription-repair coupling factor [Turicibacter sanguinis PC909]
          Length = 1176

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/392 (33%), Positives = 217/392 (55%), Gaps = 24/392 (6%)

Query: 261 IAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           I Q    N  P+  T+ Q  A+ +I +DM Q + M R+L GDVG GKT VA+ A   AV 
Sbjct: 606 IEQHAFENAFPYVETEDQLKAVTEIKEDMEQPHPMDRLLIGDVGYGKTEVAMRAAFKAVM 665

Query: 320 AGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            G Q   +AP  IL +QHYE F+ ++ +   + + ++   +    +++ L  I  G+  I
Sbjct: 666 DGKQVAYLAPTTILTKQHYESFVSRFKE-FPVKIGLLNRYVSLKEQQELLTNIKSGKIDI 724

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           ++GTH L    +++  L L+I+DE+ RFGV+ + K+ +  T   VL +TATPIPRTL ++
Sbjct: 725 VVGTHRLLSKDVKFKDLGLLIIDEEQRFGVEHKEKIKEFKTEVDVLTLTATPIPRTLQMS 784

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--E 494
            +G   +S I   P  R P++T ++  +   I + IER    L+   + +++  ++   E
Sbjct: 785 MIGIRSLSLIETPPMNRYPVQTYVLEEHDGVIRDAIER---ELARDGQVFYLYNRVSDIE 841

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           K+ +  + +V           + +   HG+MS    E  M  F++    +L+ TT+IE G
Sbjct: 842 KRAARIKKLVP---------DAIVEYAHGQMSKEQLEQTMADFEDKKFNVLVCTTIIETG 892

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLK 612
           ID+ +A+ +II ++   GL+QL+QLRGRVGR + I+    +Y  +  L++N+  RL  +K
Sbjct: 893 IDIPNANTLIISDSYRLGLSQLYQLRGRVGRSDRIAYAYCMYPKNKVLTENAEKRLQTIK 952

Query: 613 N-TE--DGFLIAEEDLKQRKEGEILGIKQSGM 641
             TE   GF IA  DL  R  G++LG +Q G 
Sbjct: 953 EFTELGSGFKIAMRDLAIRGAGDMLGAQQYGF 984


>gi|227822023|ref|YP_002825994.1| putative transcription-repair coupling factor [Sinorhizobium fredii
            NGR234]
 gi|227341023|gb|ACP25241.1| putative transcription-repair coupling factor [Sinorhizobium fredii
            NGR234]
          Length = 1170

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/423 (32%), Positives = 228/423 (53%), Gaps = 36/423 (8%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q ++I+ +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P
Sbjct: 622  PYEETEDQLNSIEAVRDDLGGGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGVQVAVVVP 681

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEI---ITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              +LA+QH++      +   I ++    + G+   A  +K    +A G+  I++GTHAL 
Sbjct: 682  TTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTKK---EVADGKTDIVVGTHALL 738

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              SI++  L L+I+DE+  FGV+ + +L +  T  HVL ++ATPIPRTL L   G  ++S
Sbjct: 739  GSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSATPIPRTLQLALTGVRELS 798

Query: 447  KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
             IT  P  R  ++T I P + +  + E L      G +++++CP++ +  E         
Sbjct: 799  LITTPPVDRMAVRTFISPFDAL-VIRETLMREHYRGGQSFYVCPRLSDLSE--------- 848

Query: 507  FNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
               +H+   S      +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+
Sbjct: 849  ---IHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTAN 905

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLSVLKNTED- 616
             +++  A+ FGLAQL+QLRGRVGR +       L+  P++K     +  RL VL++ +  
Sbjct: 906  TLVVHRADMFGLAQLYQLRGRVGRSK--VRAFALFTLPVNKTLTGPAERRLKVLQSLDTL 963

Query: 617  --GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDP 671
              GF +A  DL  R  G +LG +QSG  K   F + Q  L +++ E+  ++  H     P
Sbjct: 964  GAGFQLASHDLDIRGAGNLLGGEQSGHIKEVGFELYQQMLEEAVAELKGEEEIHDTGWSP 1023

Query: 672  DLT 674
             ++
Sbjct: 1024 QIS 1026


>gi|281425314|ref|ZP_06256227.1| hypothetical protein HMPREF0971_02286 [Prevotella oris F0302]
 gi|281400607|gb|EFB31438.1| transcription-repair coupling factor [Prevotella oris F0302]
          Length = 1139

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/409 (32%), Positives = 213/409 (52%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q + E G   + +  +  ++  +  +  T  Q  A +D+  DM  +  M R++ 
Sbjct: 542 LIKLYAQRRHEKGYAFSGDSYLQHELEASFLYEDTPDQSKATQDVKADMESQRPMDRLVC 601

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   A     Q  ++ P  +LA QHY+  K   +   + V+ ++   
Sbjct: 602 GDVGFGKTEVAVRAAFKAACDSKQVAVLVPTTVLAYQHYQTFKNRLKGMPVRVDYLSRAR 661

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                ++ L  +   +  I+IGTH L   S++++ L L+I+DE+ +FGV  + KL +  T
Sbjct: 662 SAKQTKQVLTDLEDDKIDILIGTHKLLGKSVKWHDLGLLIIDEEQKFGVSTKEKLRKMKT 721

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L M+ATPIPRTL  + +G  D+S I   P  R PI T +   +   EVI + +   
Sbjct: 722 NVDTLTMSATPIPRTLQFSLMGARDMSIIRTPPPNRYPIHTELATFSH--EVIADAINFE 779

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + Y++  +I          + E  N +H++     +AI HG+M     E V+  F
Sbjct: 780 MSRNGQVYFVHDRIN--------GLQEIANLIHKYVPDCRVAIGHGQMPPDRLEKVLMGF 831

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L++TT++E GID+ +A+ +II +A  FGL+ LHQ+RGRVGR    + C LL  
Sbjct: 832 MNYDYDVLLSTTIVENGIDISNANTMIINDAHRFGLSDLHQMRGRVGRSNRKAFCYLLAP 891

Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           P   L+  +  RL  L+N  +   GF +A +DL  R  G +LG +QSG 
Sbjct: 892 PKTSLTPEARRRLEALENFSELGSGFDLAMQDLDIRGAGNLLGAEQSGF 940


>gi|256827273|ref|YP_003151232.1| transcription-repair coupling factor Mfd [Cryptobacterium curtum
           DSM 15641]
 gi|256583416|gb|ACU94550.1| transcription-repair coupling factor Mfd [Cryptobacterium curtum
           DSM 15641]
          Length = 1155

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 202/378 (53%), Gaps = 13/378 (3%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  Q +AI D+  DM     M R++ GDVG GKT VAL A   A + G Q +++
Sbjct: 605 DFPYQETPDQLAAIADVKADMRSARPMDRLICGDVGFGKTEVALRAAFKATQDGKQVMVL 664

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQHY   K   +   + VE+++     + +  AL   A G   +++GTH L  
Sbjct: 665 CPTTILAQQHYTTFKDRFEEYGVTVEVLSRFRFSSEQAAALSGFAQGTVDVLVGTHRLLS 724

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  + L LVI+DE+ RFGV  + +L     +  VL ++ATPIPRT+ ++  G  D+S 
Sbjct: 725 RDVNPHDLGLVIIDEEQRFGVGHKEQLKNLRESIDVLTLSATPIPRTMQMSLSGVRDMSL 784

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I   P  RKPIK  +   +  D V + ++  L+   + Y++  ++    ++     V R 
Sbjct: 785 IMTPPDDRKPIKVHVGEWDP-DVVSDAIRRELARNGQVYYVSNRVRTIDDA-----VARV 838

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + I + HG+MS    E VM+ F  G   +L+ATT+IE GID    + +IIE+
Sbjct: 839 GQAAGE--ARIGVAHGQMSKEQLEQVMEEFAAGEIDVLVATTIIESGIDNPHTNTLIIED 896

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
           ++  GLAQ++QL+GRVGR    +    ++  + PL++ +  RL  +   ++   G  +A 
Sbjct: 897 SQRLGLAQMYQLKGRVGRSSLQAYAYFMFPENVPLTEEATARLEAVGEYQELGSGMKVAM 956

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 957 RDLEIRGAGSMLGAEQSG 974


>gi|153010961|ref|YP_001372175.1| transcription-repair coupling factor [Ochrobactrum anthropi ATCC
           49188]
 gi|151562849|gb|ABS16346.1| transcription-repair coupling factor [Ochrobactrum anthropi ATCC
           49188]
          Length = 1170

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 140/422 (33%), Positives = 231/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++  
Sbjct: 589 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFSAR-FPYDETDDQLTAIESVADDLAAG 644

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  I+ P  +L++QH++   K      I 
Sbjct: 645 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAIVVPTTLLSRQHFKTFSKRFHGLPIN 704

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           +     + G    A  +K LE    G   I++GTHAL  +SI++  L L+I+DE+  FGV
Sbjct: 705 LAHASRLVGTKELAAAKKGLE---EGTVDIVVGTHALLGNSIKFKNLGLLIIDEEQHFGV 761

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 762 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 821

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++CP+I +  E      +E F  L  H     +A+ HG+M
Sbjct: 822 VIRETLLRERY---RGGQSFYVCPRISDLGE------IEEF--LKTHVPELKVAVAHGQM 870

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 871 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 930

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 931 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 988

Query: 639 SG 640
           SG
Sbjct: 989 SG 990


>gi|34556787|ref|NP_906602.1| ATP-dependent DNA helicase RecG [Wolinella succinogenes DSM 1740]
 gi|34482502|emb|CAE09502.1| ATP-DEPENDENT DNA HELICASE EC 3.6.1 [Wolinella succinogenes]
          Length = 605

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 151/402 (37%), Positives = 213/402 (52%), Gaps = 37/402 (9%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF  T  Q+ AI  I +D+S      RI+ GDVG GKTLV  I  AA +    QAV+M
Sbjct: 223 SLPFPLTSGQKEAIGAIWRDLSSSKAARRIIMGDVGCGKTLV--ILAAAYMAYPKQAVLM 280

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL---ERIAHG-QAHIIIGTH 383
           AP  ILA+Q Y   K++              +P AH + AL   ER +   +A+++IGTH
Sbjct: 281 APTTILAEQLYAEAKRF--------------LP-AHFKIALVMQERSSDSLEANLLIGTH 325

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-----TQKATAPHVLLMTATPIPRTLVLT 438
           AL    +   +  LV++DEQHRFG  QR  L      ++   PHVL  +ATPIPRTL + 
Sbjct: 326 ALLYRKLD--QAALVMIDEQHRFGTAQRSTLERSLSDERGHRPHVLQFSATPIPRTLAMI 383

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               ID + I + P   K I T +I       ++  L   +++GK+A  I P +EE +  
Sbjct: 384 ESNLIDFTFIRDIPFP-KDITTRVIAKGDFPALLSHLAQEIAQGKQAAIIYPLVEESENL 442

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           ++ S+ E      + F   + + HG+  D +KE+V++ F+    K+L+ATTV+EVGI + 
Sbjct: 443 DYLSLKEGEAFWRKRF-EGVYVTHGK--DREKEAVLEEFRE-KGKILLATTVVEVGISLP 498

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             S I+I  AE  GLA LHQLRGRV R      C L  H   SK    RL    +T DGF
Sbjct: 499 KLSTIVIVGAERLGLATLHQLRGRVSRNGLKGYCFLYTHHKASK----RLDDFASTLDGF 554

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            IAE DLK R+ G+++G  +     F    P     LL+ A+
Sbjct: 555 EIAELDLKYRQGGDLVGGGRQSGESFTYFDPSCDQELLQEAQ 596


>gi|86357714|ref|YP_469606.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
            CFN 42]
 gi|86281816|gb|ABC90879.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
            CFN 42]
          Length = 1167

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/419 (31%), Positives = 223/419 (53%), Gaps = 28/419 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q++AI+ +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P
Sbjct: 621  PYDETEDQDNAIEAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAVVVP 680

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QH++   +  +   + V+  +  +         + +A G+  I++GTHAL    
Sbjct: 681  TTLLARQHFKTFSERFRGLPVRVQQASRLVGAKDLALTKKEVADGKTDIVVGTHALLGAG 740

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I++  L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT
Sbjct: 741  IKFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLIT 800

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R  ++T I P + +  + E L      G +++++CP++ +               
Sbjct: 801  TPPVDRMAVRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLAD------------LAD 847

Query: 510  LHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +H    S      +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I
Sbjct: 848  VHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLI 907

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTED---GF 618
            +  A+ FGLAQL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF
Sbjct: 908  VHRADMFGLAQLYQLRGRVGR-SKVRAFALFTLPVNKVLTATAERRLKVLQSLDTLGAGF 966

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
             +A  DL  R  G +LG +QSG  K   F + Q  L +++ E+   D  H     P ++
Sbjct: 967  QLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGWSPQIS 1025


>gi|313159822|gb|EFR59178.1| transcription-repair coupling factor [Alistipes sp. HGB5]
          Length = 1108

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/410 (33%), Positives = 215/410 (52%), Gaps = 18/410 (4%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           IAL   RK  K   G     +  +  ++  +  +  T  Q++ +  + +DM     M R+
Sbjct: 520 IALYAKRKASK---GFAFTPDSYLQHELEASFQWEDTPDQQTTVAAVKKDMESDQPMDRL 576

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA+ A   A   G Q  ++ P  ILA QHY    +  +N  + VE +  
Sbjct: 577 VCGDVGFGKTEVAIRAAFKAAVDGKQVAVLVPTTILALQHYRSFSERLRNFPVRVEYLNR 636

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                   +    +  G+  I+IGTH +    I +  L L+I+DE+ +FGV  + KLTQ 
Sbjct: 637 TKTAKEVSQIRADLEAGRIDILIGTHKILGKQIVFRDLGLLIIDEEQKFGVAAKEKLTQL 696

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLK 476
           A     L +TATPIPRTL  + +G  D+S I+  P  R+PI T     +  +E+I + ++
Sbjct: 697 AVNVDTLTLTATPIPRTLQFSLMGSRDLSVISTPPPNRQPIVTESHVFS--EEIIRDAVE 754

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             L+ G + Y++  ++E+      + ++ R         + + + HG+M     E ++  
Sbjct: 755 TELARGGQVYFVHNRVEDLM--TMQGLITRICP-----KARVGVGHGKMPAEKLERLIMD 807

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   +L+ATT++E GID+ +A+ II+ NA++FGL+ LHQLRGRVGR  + + C LL 
Sbjct: 808 FIYGEFDVLVATTIVENGIDIPNANTIIVNNAQNFGLSDLHQLRGRVGRSNQKAYCYLLS 867

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
            P   LS ++  RL  ++   D   GF IA +DL  R  G +LG +QSG 
Sbjct: 868 PPDELLSSDARRRLRAIEEFSDLGSGFNIAMQDLDIRGAGNLLGAEQSGF 917


>gi|212550582|ref|YP_002308899.1| transcription-repair coupling factor [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548820|dbj|BAG83488.1| transcription-repair coupling factor [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 1109

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 137/410 (33%), Positives = 217/410 (52%), Gaps = 19/410 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  + ++E G   + +  + +++  +  +  T  Q     +I +DM     M R++ 
Sbjct: 521 LIQLYSKRREEKGFAFSSDTYLQKELEASFFYENTPDQAKVNMEIKKDMENIRPMDRLVC 580

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT +A+ A   AV    Q  ++ P  +LA QHY   K+   N  + +  I+   
Sbjct: 581 GDVGFGKTELAIRAAFKAVTDSKQVAVLVPTTLLAFQHYNTFKERLSNFPVTINYISRAR 640

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                +  ++++  G   I+IGTH +    +Q+  L L+I+DE+ +FGV+ + KL Q  T
Sbjct: 641 TTKDSKTIIKKLKEGTIDILIGTHRIVSKDVQFKDLGLLIIDEEQKFGVEVKEKLKQMKT 700

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKV 477
               L +TATPIPRTL  + +G  DIS I+  P  R PI T    ++R ++ I  E +  
Sbjct: 701 NIDSLTLTATPIPRTLQFSLMGARDISNISTPPPNRYPIHT---ELHRFEKNIIREAINF 757

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            +S   + + I  +I      + + +V++     E     IAI HG+M     E ++  F
Sbjct: 758 EMSRNGQIFIINNRISNL--GDLKDLVKK-----EIPDGRIAIGHGQMESTKLEQIITDF 810

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +LI+T++IE GID+ +A+ III NA++FGL+ LHQLRGRVGRG   + C LL  
Sbjct: 811 VNYEYDILISTSIIENGIDIPNANTIIINNAQNFGLSDLHQLRGRVGRGNRKAFCYLLC- 869

Query: 598 PPLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PPLS     +  RL  ++   +   G  IA +DL  R  G+ILG +QSG 
Sbjct: 870 PPLSNLTPKTVRRLHAIEGFSELGSGIHIAMQDLDIRGAGDILGAEQSGF 919


>gi|260060951|ref|YP_003194031.1| transcription-repair coupling factor [Robiginitalea biformata
           HTCC2501]
 gi|88785083|gb|EAR16252.1| transcription-repair coupling factor [Robiginitalea biformata
           HTCC2501]
          Length = 1121

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/377 (33%), Positives = 203/377 (53%), Gaps = 15/377 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q +A + +  DM  +  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P 
Sbjct: 555 YEDTPDQSTATEAVKADMESERPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPT 614

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH+    +      + V+ +        RR  LE +  G+  I+IGTH L    +
Sbjct: 615 TILAFQHFRTFGERLAEMPVTVDYLNRFRSAKERRTLLENLKSGKLDIVIGTHQLVGKQV 674

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+IVDE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S I  
Sbjct: 675 EFKDLGLLIVDEEQKFGVSVKDKLKSLKEHIDVLTLTATPIPRTLQFSLMAARDLSVINT 734

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R PI++ ++     +EVI + ++  +  G + +++  +IE   E     +++R   
Sbjct: 735 PPPNRYPIESRVVRFG--EEVIRDAIRYEIQRGGQVFFVHNRIENIAE--VAGLIQRLVP 790

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 + + I HG+M     E +M  F NG   +L++TT+IE G+DV +A+ I+I NA 
Sbjct: 791 -----DARVGIGHGQMEGKKLEKLMLDFMNGEFDVLVSTTIIESGLDVTNANTILINNAN 845

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEED 624
           +FGL+ LHQ+RGRVGR  + + C  +  P   ++  +  R+  L+   +   GF IA +D
Sbjct: 846 NFGLSDLHQMRGRVGRSNKKAFCYFITPPYHVMTAEARKRMEALEQYTELGSGFNIAMKD 905

Query: 625 LKQRKEGEILGIKQSGM 641
           L+ R  G++LG +QSG 
Sbjct: 906 LEIRGAGDLLGGEQSGF 922


>gi|328952684|ref|YP_004370018.1| transcription-repair coupling factor [Desulfobacca acetoxidans DSM
           11109]
 gi|328453008|gb|AEB08837.1| transcription-repair coupling factor [Desulfobacca acetoxidans DSM
           11109]
          Length = 1168

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 138/376 (36%), Positives = 204/376 (54%), Gaps = 15/376 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q  AI+D+L+DM+    M R++ GDVG GKT VAL A   A   G Q   + P 
Sbjct: 608 FEETPDQLEAIQDVLEDMASDRVMDRLICGDVGYGKTEVALRAAFKAAMDGKQVAFLVPT 667

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH E  K+  ++  + +  ++       +++ L  ++ G+  IIIGTH L Q  +
Sbjct: 668 TVLAEQHLETFKRRFRSYPLEIRALSRFRAFKEQKRILADLSAGKVDIIIGTHRLLQKDV 727

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            + +L L+IVDE+ RFGV  + KL +      VL ++ATPIPRTL +   G  ++S I  
Sbjct: 728 HFKELGLIIVDEEQRFGVSHKEKLKKFRQTVDVLTLSATPIPRTLQMAMTGIREMSIINT 787

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            PA R+ IKT ++  N  D +I E ++  L  G + +++  ++      N  S V     
Sbjct: 788 APAERQSIKTYLVRPN--DSIICEAVRRELERGGQVFFVHNRVH-----NLPSYVAYLKR 840

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L     + I + HG+M + D E VM  F      +L+ T +IE G+D+  A+ III  A 
Sbjct: 841 LVP--KARIGMAHGQMPEKDLEHVMWQFWRREIDVLVCTAIIESGLDIPAANTIIINRAH 898

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRL-SVLKNTE--DGFLIAEED 624
             GLAQ++QLRGRVGRG E +   LL      L+  +  RL ++++ TE   GF IA  D
Sbjct: 899 ALGLAQIYQLRGRVGRGREQAYAYLLVPEEEHLNPEAQKRLKALMEFTELGSGFKIALHD 958

Query: 625 LKQRKEGEILGIKQSG 640
           L+ R  G ILG  QSG
Sbjct: 959 LQIRGAGNILGAAQSG 974


>gi|257438137|ref|ZP_05613892.1| transcription-repair coupling factor [Faecalibacterium prausnitzii
           A2-165]
 gi|257199468|gb|EEU97752.1| transcription-repair coupling factor [Faecalibacterium prausnitzii
           A2-165]
          Length = 1155

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 141/455 (30%), Positives = 227/455 (49%), Gaps = 21/455 (4%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWT-SPARERLAYDELLAGQIALLLMRKQFKKE 250
           DLL + + P   E   +     K    EW  + A+ + A +E+    I L   R+Q +  
Sbjct: 538 DLLSRYTAPGDEEKVKLA----KLGGAEWQRTRAKVKKAAEEMAQELIELYARRRQAQ-- 591

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            G     +G           +  T  Q  A  +I QDM +   M R+L GDVG GKT VA
Sbjct: 592 -GYAFPPDGDWQNDFETRFEYDETDDQLHATAEIKQDMEKPYPMDRLLCGDVGVGKTEVA 650

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           L A    V  G Q  ++AP  +LA QHY  +    +   + + +++       +++ L  
Sbjct: 651 LRAAFKCVMGGKQCALLAPTTLLAWQHYNTLLSRMEAFPVKIGMLSRFRTAKQQKETLRG 710

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           +  G   I++GTH L    ++++ L LVI+DE+ RFGV+ + KL +      +L ++ATP
Sbjct: 711 LQSGSVDIVVGTHRLLSKDVRFHDLGLVIIDEEQRFGVKHKEKLKENFIGVDMLTLSATP 770

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +   G  D+S I + P  R+P++T ++  N +  + E +K  L+ G + Y++  
Sbjct: 771 IPRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDV-ILAEAMKKELARGGQVYYLHN 829

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +++     N  S     + L     + + I HG+M++ +   V     NG   +L+ TT+
Sbjct: 830 RVD-----NIESTAAHVSQLVP--GARVGIAHGKMTEEELNPVWQHLLNGEIDILVCTTL 882

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRL 608
           IE GIDV + + +IIE+A+  GLAQL+Q+RGRVGR    +     +     L+  +  RL
Sbjct: 883 IETGIDVRNCNTLIIEDADRMGLAQLYQIRGRVGRSGRKAYAYFTFRRDKTLTDIAQKRL 942

Query: 609 SVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           S ++       GF IA  DL+ R  G +LG  Q G
Sbjct: 943 SAIREFTAFGSGFRIAMRDLQIRGAGSLLGHSQHG 977


>gi|188584709|ref|YP_001916254.1| transcription-repair coupling factor [Natranaerobius thermophilus
            JW/NM-WN-LF]
 gi|179349396|gb|ACB83666.1| transcription-repair coupling factor [Natranaerobius thermophilus
            JW/NM-WN-LF]
          Length = 1196

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 138/407 (33%), Positives = 215/407 (52%), Gaps = 30/407 (7%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q+ AI +I +D+  +  M R+L GDVG GKT VA+ A   AV  G Q  ++ P
Sbjct: 634  PYELTPDQKKAISEIKEDLESEQPMDRLLCGDVGYGKTEVAMRAAFKAVMEGKQVCVLVP 693

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              ILAQQH++  K+      + + +I+    Q   +   E +  G A IIIGTH L   S
Sbjct: 694  TTILAQQHFQTFKERFAPYPVDIRVISRFSSQKDEKLVKEEMKEGNAEIIIGTHKLLNKS 753

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +++  L L+I+DE+ RFGVQ + K+        VL MTATPIPRTL ++ +G  D+S I 
Sbjct: 754  VKFRDLGLLIIDEEQRFGVQHKEKIKMLKKNLDVLTMTATPIPRTLHMSLVGVRDLSVIE 813

Query: 450  EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
              P GR P++T ++  +   I E + R    +S   + Y +             + V+  
Sbjct: 814  TPPEGRFPVQTYVMEHSPQLIREAVNR---EISREGQVYVV------------HNRVKGI 858

Query: 508  NSLHEHFT-----SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            N + +        + + + HG+M +   E VM  F  G   +L++T+++E G+D+ + + 
Sbjct: 859  NKVAKEVADWVPDAKVGVAHGQMPEKQLERVMLDFYEGKYDVLVSTSIVEAGLDIQNVNT 918

Query: 563  IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DG 617
            III NA+  GL+Q +QLRGRVGR   ++   L Y     L++ +  RL  +K  TE   G
Sbjct: 919  IIIYNADRMGLSQPYQLRGRVGRSNRMAYAYLTYQKDKVLTQEAEKRLKAIKEFTELGSG 978

Query: 618  FLIAEEDLKQRKEGEILGIKQSG---MPKFLIAQPELHDSLLEIARK 661
            F +A  DL+ R  G ILG +Q G      F +    L D++ EI+++
Sbjct: 979  FKLALRDLEIRGAGNILGPEQHGHIMAVGFDMYTKMLKDAIKEISQE 1025


>gi|304405853|ref|ZP_07387511.1| transcription-repair coupling factor [Paenibacillus curdlanolyticus
           YK9]
 gi|304345096|gb|EFM10932.1| transcription-repair coupling factor [Paenibacillus curdlanolyticus
           YK9]
          Length = 1177

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 130/378 (34%), Positives = 207/378 (54%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  AI +I  DM     M R+L GDVG GKT VA+ A   A   G Q  I+ P
Sbjct: 609 PYDETRDQLRAIGEIKADMEMSRPMDRLLCGDVGYGKTEVAVRAAFKAAIEGKQVAILVP 668

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQH+E  ++        V++++    +  + + ++ I  G   I+IGTH L    
Sbjct: 669 TTILAQQHFETFRERFSGYPFNVQVLSRFRSRKEQNETMKGIKAGTVDIVIGTHRLLSQD 728

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 729 VVFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIE 788

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T ++  +   + E +ER    L+ G + Y++  +++         + ++ 
Sbjct: 789 TPPENRFPVQTYVLEYSAALVRESVER---ELARGGQVYYLYNRVQ-----GIHQMADQI 840

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            +L     + +A+ HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +
Sbjct: 841 KALVPD--ARVAVGHGQMSEQELEKTILDFLDGESDVLVSTSIIETGVDIPNVNTLIVHD 898

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+QLRGRVGR   I+     Y     L++ +  RL  +K  TE   GF IA 
Sbjct: 899 ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAM 958

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G +LG +Q G
Sbjct: 959 RDLAIRGAGNLLGAEQHG 976


>gi|114777171|ref|ZP_01452182.1| transcription-repair coupling factor [Mariprofundus ferrooxydans
           PV-1]
 gi|114552316|gb|EAU54799.1| transcription-repair coupling factor [Mariprofundus ferrooxydans
           PV-1]
          Length = 1109

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 205/381 (53%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q  AI  +L D++    M R++ GDVG GKT VA+ A     E+G Q  ++AP
Sbjct: 567 PFEETDDQAQAIDAVLTDLALDKPMDRVICGDVGFGKTEVAMRAAFVVAESGRQVAVLAP 626

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA QHY    +    T + V +I+    +    +    +A G   II+GTH L  D+
Sbjct: 627 TTVLANQHYASFAERFIGTDLKVAMISRLQGKKEVEQICRGLAGGDIRIIVGTHRLLSDT 686

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            ++  L +VIVDE+ RFGV+ + KL     +  +L +TATPIPRTL  T  G   +S I+
Sbjct: 687 FEFADLGMVIVDEEQRFGVKHKQKLKSLHASVDLLTLTATPIPRTLHQTMSGLRSVSIIS 746

Query: 450 EKPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             PA R+ I+T+   ++  D  I R  ++  L  G + Y++          N    +ER 
Sbjct: 747 TPPAEREAIRTM---VSSFDPHIAREAIRRELYRGGQVYYL---------HNHVQSIERI 794

Query: 508 NS-LHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            + L E    + I I HG+M+  + +  M +F  G   +L+ TT+IE G+DV +A+ +I+
Sbjct: 795 TARLREDVPEAEIGIAHGQMTPAELDRQMLAFYEGRLHILVCTTIIESGLDVANANTLIV 854

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTED---GFL 619
           E A+  GL+QLHQ+RGRVGR     +   L+ P    ++ ++  RL  +    +   GFL
Sbjct: 855 ERADLLGLSQLHQIRGRVGRSHR-QAYAYLFTPDARAMTADARERLQAIAEHSELGAGFL 913

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A +D++ R  G +LG +QSG
Sbjct: 914 LARQDMEIRGAGNLLGAEQSG 934


>gi|188580552|ref|YP_001923997.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179344050|gb|ACB79462.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 1085

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 154/453 (33%), Positives = 241/453 (53%), Gaps = 16/453 (3%)

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIK 282
           AR RL  +  LA     +L   Q +++   P I    +  ++      F  T  Q  A++
Sbjct: 500 ARRRLEAEATLAKAARAMLKAAQERRKAHAPQIVPPEREMERFAAGFGFPLTGDQAGAVE 559

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           + L D++++  M R++ GDVG GKT VAL A AAA+ AG Q  +MAP  +L +QH E  +
Sbjct: 560 ETLDDLAREAPMDRLVCGDVGFGKTEVALRAAAAALFAGRQVAVMAPTTVLVRQHVETFR 619

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +      I V  ++  +  A  ++    +A G   +++GT AL    + ++ L L I+DE
Sbjct: 620 RRFARFGIEVAHLSRLVSPAEAKRVKRGLADGSVRLVVGTQALAGRGVAFHDLGLAIIDE 679

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + RFG + +  L + A   H+L ++ATPIPRTL    +G   +S I   PA R+PI+TVI
Sbjct: 680 EQRFGAKTKASLRKAAGDAHILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQPIRTVI 739

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
            P      +   L+     G +++ +CP+IE     +   + +R  SL      ++ I H
Sbjct: 740 APFEEA-TLAAALRREHRRGGQSFVVCPRIE-----DIAPMAKRLRSLVPGL--AVVIAH 791

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G M   + +  M  F +G   +L+AT++IE G+DV  A+ +++ +AE FGLAQLHQLRGR
Sbjct: 792 GEMKPAEMDDAMVRFADGDGDVLLATSIIESGLDVPRANTMLVWDAERFGLAQLHQLRGR 851

Query: 583 VGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIK 637
           VGRG+      L  HP  PLS ++  RL  L+  +    GF I+  DL  R  G+++G  
Sbjct: 852 VGRGQRRGVVYLFGHPDKPLSPSTEKRLRTLEALDRLGAGFAISARDLDLRGAGDLVGDD 911

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           QSG  K +     L+  LL++A + AK    +D
Sbjct: 912 QSGHVKLVGLG--LYQHLLQLALRAAKGEAAED 942


>gi|150396613|ref|YP_001327080.1| transcription-repair coupling factor [Sinorhizobium medicae WSM419]
 gi|150028128|gb|ABR60245.1| transcription-repair coupling factor [Sinorhizobium medicae WSM419]
          Length = 1171

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 135/405 (33%), Positives = 220/405 (54%), Gaps = 32/405 (7%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q ++I  +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P
Sbjct: 623  PYDETEDQLNSIDAVRDDLGSGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGVQVAVVVP 682

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEI---ITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              +LA+QH+    +  +   I ++    + G+   A  +K    +A G+  I++GTHAL 
Sbjct: 683  TTLLARQHFRTFSERFRGLPIRIQQASRLVGSKELALTKK---EVAEGKTDIVVGTHALL 739

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              SI++  L L+I+DE+  FGV+ + +L +  T  HVL ++ATPIPRTL L   G  ++S
Sbjct: 740  GSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSATPIPRTLQLALTGVRELS 799

Query: 447  KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
             IT  P  R  ++T I P + +  + E L      G +++++CP++ +  E         
Sbjct: 800  LITTPPVDRMAVRTFISPFDAL-VIRETLMREHYRGGQSFYVCPRVSDLPE--------- 849

Query: 507  FNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
               +H+   S      +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+
Sbjct: 850  ---IHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTAN 906

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGE--EISSCILLYHPPLSKNSYTRLSVLKNTED--- 616
             +I+  A+ FGLAQL+QLRGRVGR +    S   L  +  L+  +  RL VL++ +    
Sbjct: 907  TLIVHRADMFGLAQLYQLRGRVGRSKVRAFSLFTLPVNKTLTGPAERRLKVLQSLDTLGA 966

Query: 617  GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEI 658
            GF +A  DL  R  G +LG +QSG  K   F + Q  L +++ E+
Sbjct: 967  GFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEL 1011


>gi|260912528|ref|ZP_05919061.1| transcription-repair coupling factor [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260633351|gb|EEX51508.1| transcription-repair coupling factor [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 1134

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 132/401 (32%), Positives = 209/401 (52%), Gaps = 17/401 (4%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           + E G   + +  +  ++  +  +  T  Q  A  ++  DM +   M R++ GDVG GKT
Sbjct: 543 RTERGFAFSHDSFMQHELEASFLYDDTPDQLKATTEVKADMERARPMDRLVCGDVGFGKT 602

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A     Q  +M P  +LA QH++   K  +N  + V+ ++        R+ 
Sbjct: 603 EVAIRAAFKAACDSKQVAVMVPTTVLAFQHFKTFSKRLENLPVRVDYLSRARSAKQTRQV 662

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L+ +A G+  IIIGTH L   +++++ L L+I+DE+ +FGV  + KL    T    L M+
Sbjct: 663 LDDLAAGKIDIIIGTHKLIGKTVKWHDLGLLIIDEEQKFGVSTKEKLRTLKTNVDTLTMS 722

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL  + +G  D+S +   P  R PI T I   +    + E +   +S   + Y+
Sbjct: 723 ATPIPRTLQFSLMGARDMSVMRTPPPNRHPIHTEIATFDGA-FIAEAINFEMSRNGQVYF 781

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +  +I         ++ E  N + +H     + I HG+M   D E+ +  F N    +L+
Sbjct: 782 VNDRIS--------NLPELANIIRKHVPDCRVVIAHGQMKPEDLENALIDFMNHEYDVLL 833

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---N 603
           +T++IE GID+ +A+ III +A   GL+ LHQ+RGRVGR    + C LL  PPLS    +
Sbjct: 834 STSIIENGIDISNANTIIINHAHKVGLSDLHQMRGRVGRSNRKAFCYLL-APPLSALTPD 892

Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           +  R+  L+   D   GF IA +DL  R  G +LG +QSG 
Sbjct: 893 ARRRMEALETFSDLGSGFNIAMQDLDIRGAGNLLGAEQSGF 933


>gi|90071180|emb|CAJ65832.1| putative transcription repair-coupling factor [uncultured
           Porphyromonadaceae bacterium]
          Length = 1053

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 131/402 (32%), Positives = 209/402 (51%), Gaps = 19/402 (4%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +KE G   + +G +  ++  +  +  T  Q  A + +  DM  +  M R++ GDVG GKT
Sbjct: 467 RKEKGFAYSPDGYLQHELEASFIYEDTPDQLKATEAVKADMESERPMDRLVCGDVGFGKT 526

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A   G Q  ++ P  +LA QH+    +  ++  + V+ ++        ++ 
Sbjct: 527 EVAIRAAFKAATDGKQTAVLVPTTVLAYQHFTTFSERLKDFPVRVDYLSRARKPKDVKRI 586

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           LE +  G+  IIIGTH L   ++Q+  L L++VDE+ +FGV  + KL Q       L M+
Sbjct: 587 LEELKEGKIDIIIGTHKLIGKTVQFKDLGLLVVDEEQKFGVGVKEKLKQLKVNVDTLTMS 646

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486
           ATPIPRTL  + +G  D+S I   P  R PI T +  ++  DE++ E +   L+ G + +
Sbjct: 647 ATPIPRTLQFSLMGARDLSAINTPPRNRYPIITNVTALD--DEILREAINFELARGGQVF 704

Query: 487 WICPQIEE--KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +  +IE+    ES  R +V           +   + HG+M+    E  +  F      +
Sbjct: 705 IVNNRIEQLFDLESRVRRLVP---------DARTVVGHGQMASDKLEQTIIDFAAHQYDV 755

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-----P 599
           L+ATT+IE GID+ + + III NA++FGL++LHQLRGRVGR    + C LL  P     P
Sbjct: 756 LLATTIIESGIDMPNVNTIIINNAQNFGLSELHQLRGRVGRSNRKAFCYLLVPPEAALTP 815

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           +++     +    +   G  IA +DL  R  G +LG +QSG 
Sbjct: 816 VARRRLQAIESFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 857


>gi|295101119|emb|CBK98664.1| transcription-repair coupling factor [Faecalibacterium prausnitzii
           L2-6]
          Length = 1161

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 142/455 (31%), Positives = 227/455 (49%), Gaps = 21/455 (4%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWT-SPARERLAYDELLAGQIALLLMRKQFKKE 250
           DLL + + P   E   +     K    EW  + A+ + A +E+    I L   R+Q    
Sbjct: 537 DLLSRYTAPGDEEKVKLA----KLGGTEWQRTRAKVKKATEEMAQELIELYARRRQ---A 589

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            G     +G+          +  T  Q +A  +I +DM +   M R+L GDVG GKT VA
Sbjct: 590 TGYAFPADGEWQSDFESRFEYDETDDQLTATAEIKKDMEKGWPMDRLLCGDVGVGKTEVA 649

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
             A    V  G Q  I+AP  +LA QHY  I    +   + V +++       +++ L  
Sbjct: 650 FRAAFKCVMGGKQCAILAPTTLLAWQHYNSIISRMEAFPVKVGLLSRFRTPKQQKETLRG 709

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           +  G   I+IGTH L    ++++ L LVI+DE+ RFGV+ + KL +      +L ++ATP
Sbjct: 710 LQAGSVDIVIGTHRLLSKDVRFHDLGLVIIDEEQRFGVKHKEKLKENFIGVDMLTLSATP 769

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +   G  D+S I + P  R+P++T ++  N +  + E +K  L+ G + Y++  
Sbjct: 770 IPRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDV-ILAEAMKKELARGGQVYYLHN 828

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +++     N  S     + +     + + I HG+M++ +   V     NG   +L+ TT+
Sbjct: 829 RVD-----NIESCAAHVSQMVPG--ARVGIAHGKMTEEELNPVWQHLLNGEIDILVCTTL 881

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRL 608
           IE GIDV + + +IIE+A+  GLAQL+Q+RGRVGR    +     +     L+  +  RL
Sbjct: 882 IETGIDVRNCNTLIIEDADRMGLAQLYQIRGRVGRSGRKAYAYFTFRRDKTLTDIAQKRL 941

Query: 609 SVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           S ++       GF IA  DL+ R  G +LG  Q G
Sbjct: 942 SAIREFTAFGSGFRIAMRDLQIRGAGSLLGHSQHG 976


>gi|120602306|ref|YP_966706.1| transcription-repair coupling factor [Desulfovibrio vulgaris DP4]
 gi|120562535|gb|ABM28279.1| transcription-repair coupling factor [Desulfovibrio vulgaris DP4]
 gi|311233705|gb|ADP86559.1| transcription-repair coupling factor [Desulfovibrio vulgaris RCH1]
          Length = 1159

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 227/431 (52%), Gaps = 25/431 (5%)

Query: 220 W-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           W +S  + R A +++ A  + +   RK  K     PI   G++ ++   +  F  T  Q 
Sbjct: 561 WQSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPI---GELYREFEASFGFEETPDQA 617

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI+D+L+DM +   M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QHY
Sbjct: 618 RAIQDVLEDMDKPVPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQHY 677

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +  +       + V +++  + +  + + L   A G   I+IGTH L  D ++   L L+
Sbjct: 678 QTFRSRLAGFPVNVGMLSRFVSKQKQTEVLAAAAKGHVDILIGTHRLLSDDVRLPNLGLL 737

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + KL Q       L +TATPIPRTL L+  G  ++S I   P  RKP+
Sbjct: 738 VLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLSMSGIRELSVIETAPPERKPV 797

Query: 459 KTVIIPINRIDEVIERL--KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            T +  I R D  ++ +  + +  EG + +W+  +++  E+     R +V          
Sbjct: 798 ATAL--IERDDAALKSILEREIAREG-QVFWVHNRVQGLERTTEYVRKLVP--------- 845

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + + + HG+M++   E  M  F +G   +L+ T ++E G+D   A+ +I++ A+ FGL 
Sbjct: 846 DARVGMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLG 905

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
           QL+QLRGRVGR +  +  I +      LS  +  R+ V+ + +    GF +A EDL+ R 
Sbjct: 906 QLYQLRGRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVAMEDLRIRG 965

Query: 630 EGEILGIKQSG 640
            G ILG  QSG
Sbjct: 966 AGNILGEAQSG 976


>gi|37728037|gb|AAO43498.1| transcription repair coupling factor [Rhizobium etli]
          Length = 1114

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 133/419 (31%), Positives = 223/419 (53%), Gaps = 28/419 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q++AI+ +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P
Sbjct: 621  PYDETEDQDNAIEAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAVVVP 680

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QH++   +  +   + V+  +  +         + +A G+  I++GTHAL    
Sbjct: 681  TTLLARQHFKTFSERFRGLPVRVQQASRLVGAKDLALTKKEVADGKTDIVVGTHALLGAG 740

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I++  L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT
Sbjct: 741  IKFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLIT 800

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R  ++T I P + +  + E L      G +++++CP++ +               
Sbjct: 801  TPPVDRMALRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLAD------------LAD 847

Query: 510  LHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +H    S      +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I
Sbjct: 848  VHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLI 907

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTED---GF 618
            +  A+ FGLAQL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF
Sbjct: 908  VHRADMFGLAQLYQLRGRVGR-SKVRAFALFTLPVNKVLTATAERRLKVLQSLDTLGAGF 966

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
             +A  DL  R  G +LG +QSG  K   F + Q  L +++ E+   D  H     P ++
Sbjct: 967  QLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGWSPQIS 1025


>gi|46580312|ref|YP_011120.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449729|gb|AAS96379.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 1160

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 227/431 (52%), Gaps = 25/431 (5%)

Query: 220 W-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           W +S  + R A +++ A  + +   RK  K     PI   G++ ++   +  F  T  Q 
Sbjct: 562 WQSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPI---GELYREFEASFGFEETPDQA 618

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI+D+L+DM +   M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QHY
Sbjct: 619 RAIQDVLEDMDKPVPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQHY 678

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +  +       + V +++  + +  + + L   A G   I+IGTH L  D ++   L L+
Sbjct: 679 QTFRSRLAGFPVNVGMLSRFVSKQKQTEVLAAAAKGHVDILIGTHRLLSDDVRLPNLGLL 738

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + KL Q       L +TATPIPRTL L+  G  ++S I   P  RKP+
Sbjct: 739 VLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLSMSGIRELSVIETAPPERKPV 798

Query: 459 KTVIIPINRIDEVIERL--KVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            T +  I R D  ++ +  + +  EG + +W+  +++  E+     R +V          
Sbjct: 799 ATAL--IERDDAALKSILEREIAREG-QVFWVHNRVQGLERTTEYVRKLVP--------- 846

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + + + HG+M++   E  M  F +G   +L+ T ++E G+D   A+ +I++ A+ FGL 
Sbjct: 847 DARVGMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLG 906

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
           QL+QLRGRVGR +  +  I +      LS  +  R+ V+ + +    GF +A EDL+ R 
Sbjct: 907 QLYQLRGRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVAMEDLRIRG 966

Query: 630 EGEILGIKQSG 640
            G ILG  QSG
Sbjct: 967 AGNILGEAQSG 977


>gi|319956027|ref|YP_004167290.1| transcription-repair coupling factor [Nitratifractor salsuginis DSM
           16511]
 gi|319418431|gb|ADV45541.1| transcription-repair coupling factor [Nitratifractor salsuginis DSM
           16511]
          Length = 998

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 132/398 (33%), Positives = 215/398 (54%), Gaps = 23/398 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           GIP+ V+       L    F  T+ Q  AI+ I++++S    M R+L  DVG GKT VA+
Sbjct: 462 GIPLKVDPAEHALFLSQAGFEHTEDQMEAIRQIMEELSGGGMMDRLLSADVGFGKTEVAM 521

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A+ AAV  G QA+++ P  +L+ QHY  +K+     +I V  +    P   +R+ L R+
Sbjct: 522 NAIFAAVRNGYQAMMVVPTTLLSAQHYRSLKERFAPWEIEVAQLDRYTPAKQKREILRRL 581

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G+  +++GTHAL     ++  L LV+VDE+H+FGV+Q+  L + A   H+L M+ATPI
Sbjct: 582 EEGELKVVVGTHALL--GAKFKNLALVVVDEEHKFGVKQKEALKEMALNVHLLSMSATPI 639

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489
           PR+L +        S+I   P  R  ++T +   +   + E I R +     G + +++ 
Sbjct: 640 PRSLNMALSKIKSFSEILTPPTERVGVRTFVKSFDPKIVKEAILRER---RRGGQTFYVY 696

Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             I   E+K    R ++             + ++H +++    E  M  F+ G   LL++
Sbjct: 697 NSIAGIEEKAKQLRELIPDLR---------MTVLHSKVTAAQTEKEMMKFEAGEYDLLLS 747

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605
           TT++E GI + +A+ +I++ AE+FG+A LHQLRGRVGRG +   C LL      L +N+ 
Sbjct: 748 TTIVESGIHLPNANTMIVDGAENFGIADLHQLRGRVGRGGKEGYCYLLVEDKERLPENAR 807

Query: 606 TRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            RL  L++  +   G ++A  DL+ R  G ++G  QSG
Sbjct: 808 RRLLALESHSELGSGAVLAFHDLEIRGGGNLIGEAQSG 845


>gi|146277540|ref|YP_001167699.1| transcription-repair coupling factor [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555781|gb|ABP70394.1| transcription-repair coupling factor [Rhodobacter sphaeroides ATCC
           17025]
          Length = 1163

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 129/380 (33%), Positives = 210/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q SAI D+++D+   + M R++ GDVG GKT VA+ A   A  AG Q  ++ P
Sbjct: 602 PYQETDDQLSAIADVIKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAALAGMQVAVICP 661

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH+    +  +   + V  ++  +      +    +A G   I IGTHAL    
Sbjct: 662 TTLLARQHFRSFSERFRGFPMKVRQLSRFVSAREAAETRAGLADGTVDICIGTHALLAKG 721

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++   L L+I+DE+  FGV  + +L +  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 722 VKLKSLGLLIIDEEQHFGVSHKERLKEMRSEVHVLTLTATPIPRTLQLSLTGVRDLSIIA 781

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P++ +  +      +E 
Sbjct: 782 TPPVDRLAIRTY---VSEFDTVTIR-EALLRERYRGGQSFFVVPRLSDLPD------MEA 831

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L EH    +  + HG+++  D +  M++F +G   +L+ATT++E G+D+  A+ +I+
Sbjct: 832 F--LREHVPEVTYVVAHGQLAAGDLDERMNAFYDGKFDVLLATTIVESGLDIPTANTMIV 889

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
             A+ FGL+QL+Q+RGRVGR +  + C L   P  PL+  +  RL +L + +    GF +
Sbjct: 890 HRADMFGLSQLYQIRGRVGRAKTRAYCYLTTKPRAPLTPQAIKRLRLLASLDSLGAGFNL 949

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +QSG
Sbjct: 950 ASHDLDLRGAGNLLGEEQSG 969


>gi|325981304|ref|YP_004293706.1| transcription-repair coupling factor [Nitrosomonas sp. AL212]
 gi|325530823|gb|ADZ25544.1| transcription-repair coupling factor [Nitrosomonas sp. AL212]
          Length = 1154

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 148/429 (34%), Positives = 226/429 (52%), Gaps = 27/429 (6%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q +AIK +++D++    M R++ GDVG GKT VAL A   AV  G Q  ++ P 
Sbjct: 607  FEETADQAAAIKAVIEDLTSGKPMDRLICGDVGFGKTEVALRAAFIAVADGKQVAVLVPT 666

Query: 331  GILAQQHYE-FIKKY---TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
             +LA+QH++ F  ++        + +  ++       + +A+  +A G+  IIIGTH L 
Sbjct: 667  TLLAEQHFQNFSDRFGLIADQWPVRIAELSRFRSAKEQTQAIAGLAKGEIDIIIGTHKLI 726

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            Q  + +  L LVI+DE+HRFGV+Q+ +L +      VL +TATPIPRTL ++  G  D S
Sbjct: 727  QKDVHFKNLGLVIIDEEHRFGVRQKEQLKKLRAEVDVLTLTATPIPRTLAMSLEGLRDFS 786

Query: 447  KITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
             I   P  R  I+T +    +  I E   R    L  G + Y++  ++     S  + ++
Sbjct: 787  IIATAPQRRLAIRTFVSGFSMGIIREACLR---ELKRGGQIYFLHNEV-----STIQLML 838

Query: 505  ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            E+   L     + I I HG+M + + E VM  F      +L+ TT+IE GID+  A+ I+
Sbjct: 839  EKLTGLLPE--ARINIAHGQMPERELEHVMRDFYQQRFNILLCTTIIETGIDIPSANTIL 896

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619
            I NA  FGLAQLHQLRGRVGR    +   LL  P   L   +  RL  ++  E+   GF 
Sbjct: 897  INNAHKFGLAQLHQLRGRVGRSHHQAYAYLLTPPEEALGAQAKKRLEAIQAMEELGSGFY 956

Query: 620  IAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            +A  DL+ R  G +L   QSG M +   +   L+ S+L+ A +  K    ++PD+    G
Sbjct: 957  LAMHDLEIRGAGAVLSESQSGEMQEIGFS---LYSSMLDSAIQSLKQ--GKEPDMQHPLG 1011

Query: 679  QSIRILLYL 687
             +  I L++
Sbjct: 1012 VATEINLHV 1020


>gi|291286200|ref|YP_003503016.1| transcription-repair coupling factor [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883360|gb|ADD67060.1| transcription-repair coupling factor [Denitrovibrio acetiphilus DSM
           12809]
          Length = 1103

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 231/439 (52%), Gaps = 18/439 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q K E G     +G +     ++  +  T  Q SAI D+  DM     M R++ 
Sbjct: 532 LLKLYAQRKVEKGFSFTDDGNMLDNFEQSFEYDETDDQLSAIHDVYNDMESAMPMERLVC 591

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV  G Q  ++ P  +LA+QHY    +  ++  + V+ ++   
Sbjct: 592 GDVGFGKTEVAMRAACKAVAGGKQVAVLVPTTVLARQHYMTFFERFKDLPVKVDYVSRFR 651

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                R+ L  ++ G   I+IGTH +    I++  L L+I+DE+ RFGV  + K+    +
Sbjct: 652 TARDTRQILVDLSKGDLDILIGTHKMLSKEIEFQDLGLLIIDEEQRFGVAHKEKIKAMRS 711

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL ++ATPIPRTL L+  G  DIS I   P  R P+ T +  I R  EV   ++  L
Sbjct: 712 NVDVLYLSATPIPRTLQLSLSGIRDISTIDTPPVDRLPVITKV--IKRDVEVKNAIQREL 769

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G + +++  ++E     N ++V     ++     ++++I HG+M+  + E ++  F +
Sbjct: 770 ERGGQVFFLHNRVE-----NIQTVAAGVKNMLP--GANVSIAHGQMTSSELEKILMEFYS 822

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH-- 597
           G   +L+ T +IE GID+ +A+ I+I +A H GLAQ++QL+GRVGR      C L+    
Sbjct: 823 GKTDVLVCTAIIENGIDIANANTIVINDAAHLGLAQIYQLKGRVGRSGRRGYCYLVVEQF 882

Query: 598 PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLI-AQPELHD 653
             LS  +  RL +++   D   G  IA  DL+ R  G++LG  QSG   F++    EL  
Sbjct: 883 SSLSDVAQKRLKIIQQLSDLGSGVKIAFYDLQLRGAGDLLGADQSG---FMVKVGYELFI 939

Query: 654 SLLEIARKDAKHILTQDPD 672
           ++++ A KD K I +   D
Sbjct: 940 AMIDEAVKDLKGITSISAD 958


>gi|110634054|ref|YP_674262.1| transcription-repair coupling factor [Mesorhizobium sp. BNC1]
 gi|110285038|gb|ABG63097.1| transcription-repair coupling factor [Chelativorans sp. BNC1]
          Length = 1167

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 137/418 (32%), Positives = 226/418 (54%), Gaps = 27/418 (6%)

Query: 234 LAGQIALLLMRKQFKKEIGI--PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AGQ+  L   +Q +    I  P  + G+ A +     P+  T  Q++AI  +++D S  
Sbjct: 583 MAGQLIKLAAERQMRPAAKIMPPEGLYGEFAARF----PYEETDDQQTAIDAVIEDFSSG 638

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QH++  +       + 
Sbjct: 639 RPMDRLVCGDVGFGKTEVALRAAFLAAMEGLQVAVVVPTTLLARQHFKTFRDRFAGLPVT 698

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V   +  +      +  + +A G   I++GTHAL  +SIQ+  L L+I+DE+  FGV+ +
Sbjct: 699 VRQASRLVTAKELAETKKGVADGTVDIVVGTHALLGNSIQFKNLGLLIIDEEQHFGVKHK 758

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--ID 469
            +L +     HVL ++ATPIPRTL L   G  ++S I   P  R  ++T I P +   I 
Sbjct: 759 ERLKELKADVHVLTLSATPIPRTLQLALTGVRELSLIATPPVDRMAVRTFISPFDPLVIR 818

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528
           E + R +     G +++++ P+I +  E      V+ F  L E      +A  HG+++  
Sbjct: 819 ETLLRERY---RGGQSFYVVPRISDLAE------VKEF--LAEQVPELKVATAHGQIAAG 867

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           + + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR  +
Sbjct: 868 ELDDIMNAFYDGKYDVLLSTTIVESGLDIPTANTLIVHRADMFGLAQLYQLRGRVGR-SK 926

Query: 589 ISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           + +  L   P    L+  +  RL VL++ +    GF +A  DL  R  G +LG +QSG
Sbjct: 927 VRAYALFTLPANRTLTPTAERRLKVLQSLDALGAGFQLASHDLDIRGAGNLLGEEQSG 984


>gi|227873322|ref|ZP_03991584.1| transcription-repair coupling factor [Oribacterium sinus F0268]
 gi|227840837|gb|EEJ51205.1| transcription-repair coupling factor [Oribacterium sinus F0268]
          Length = 1138

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 137/409 (33%), Positives = 218/409 (53%), Gaps = 19/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  + ++E G P   +    ++     P+  T  Q  AI+   +DM  +  M R++ 
Sbjct: 556 LLALYAKRQEERGYPFGKDTVWQREFEEAFPYEETGDQLLAIEATKEDMESEKIMDRLVC 615

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT +AL A   AV+   Q   + P  ILAQQ Y    +  +   + V I++   
Sbjct: 616 GDVGYGKTEIALRAAFKAVQDSKQVAYLCPTTILAQQIYNGFVERMKGFPVEVGILSRFQ 675

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            Q    K LE++A G+  I++GTH L    + +  L L++VDE+ RFGVQ + ++     
Sbjct: 676 SQKEVHKTLEQLASGRIDILVGTHRLLSKDVHFKNLGLLVVDEEQRFGVQHKERIKSLKE 735

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKV 477
              VL ++ATPIPRTL ++ +G  D+S + E P  R PI+T ++      I E I R   
Sbjct: 736 NVDVLTLSATPIPRTLHMSLVGIRDLSILEEAPMDRLPIQTYVMEEEEGTIREAISR--- 792

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDS 536
            L    + Y++  +++  +++  R        L +    + IA  HG+M + + E +M S
Sbjct: 793 ELRRNGQVYYVHNRVKSIEDTALR--------LQKLLPEARIAYAHGQMGEKELEEIMLS 844

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   +L++TT+IE G+D+ +A+ +II++A+  GL+QL+Q+RGRVGR    S   LLY
Sbjct: 845 FIAGEIDVLVSTTIIETGLDIPNANTLIIQDADKMGLSQLYQIRGRVGRSNRTSYAFLLY 904

Query: 597 H--PPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
                L++ S  RL  ++  TE   G  IA  DL+ R  G +LG +Q G
Sbjct: 905 KKGKSLTEESEKRLKAIREFTELGSGIRIALRDLEIRGAGNVLGAEQHG 953


>gi|224531763|ref|ZP_03672395.1| transcription-repair coupling factor [Borrelia valaisiana VS116]
 gi|224511228|gb|EEF81634.1| transcription-repair coupling factor [Borrelia valaisiana VS116]
          Length = 1124

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 210/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P
Sbjct: 580 PYDETPDQITAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +      + L+ + +G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNTENRILKELKNGEIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIKISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE         +   
Sbjct: 760 IPPKNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEE---------LHYL 807

Query: 508 NSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            +L E  T  + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III
Sbjct: 808 KTLIEKLTPYARIAIIHGKLTGDEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIII 867

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLI 620
            NA  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    D   GF I
Sbjct: 868 NNANKFGLAQLYQLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSDLGSGFKI 927

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A +D++ R  G +LG +Q G
Sbjct: 928 AMKDMEIRGVGNLLGREQHG 947


>gi|254819273|ref|ZP_05224274.1| hypothetical protein MintA_05066 [Mycobacterium intracellulare ATCC
           13950]
          Length = 1200

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 204/377 (54%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           ++ T  Q +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 627 YTETVDQLTAITEVKGDMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 686

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH +          + V+ ++     A  +  +E +A G   ++IGTH L Q  +
Sbjct: 687 TLLADQHLQTFTDRMTGFPVTVKGLSRFTDPAESKAVIEGLADGSVDVVIGTHRLLQTGV 746

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 747 RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 806

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
            P  R P+ T + P +   +V   L+  L    + +++  ++   ++  +  R +V    
Sbjct: 807 PPEERYPVLTYVGPHDD-KQVAAALRRELLRDGQVFYVHNRVSSIDRTAAKIRELVPE-- 863

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                  + + + HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A
Sbjct: 864 -------ARVVVAHGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERA 916

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGL+QLHQLRGRVGR  E      LY  H PL++ +Y RL+ +    +   G  +A +
Sbjct: 917 DTFGLSQLHQLRGRVGRSRERGYAYFLYPPHAPLTETAYDRLATIAQNNELGAGMAVAMK 976

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G +LG++QSG
Sbjct: 977 DLEIRGAGNVLGVEQSG 993


>gi|299133932|ref|ZP_07027126.1| transcription-repair coupling factor [Afipia sp. 1NLS2]
 gi|298591768|gb|EFI51969.1| transcription-repair coupling factor [Afipia sp. 1NLS2]
          Length = 1172

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 140/437 (32%), Positives = 232/437 (53%), Gaps = 26/437 (5%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +AG +  +   +Q  +    P++ +G +  +     P   T+ Q  AI   L D++    
Sbjct: 586  IAGDLIKVAAERQLHEAPKFPVH-QG-LYDEFCARFPHDETEDQLGAINASLDDLNAGKP 643

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA+QH +   +  +   + V 
Sbjct: 644  MDRLVCGDVGFGKTEVALRAAFAVALEGRQVAVVVPTTLLARQHAKNFTERFRGFPVKVA 703

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
              +  +     R+  + +A G   I++GTHAL   +I++  L L+IVDE+  FGV  + +
Sbjct: 704  QASRLVSAKELRETKKGMADGSVDIVVGTHALLGKTIKFKNLGLIIVDEEQHFGVSHKER 763

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEV 471
            L Q     HVL ++ATPIPRTL L   G  D+S I   P  R  ++T + P +   I E 
Sbjct: 764  LKQLRAEVHVLTLSATPIPRTLQLALTGVRDLSIIASPPVDRLAVRTFVAPFDPLMIREA 823

Query: 472  IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
            + R +     G +A+++CP+I++  E+         + L ++     +A+ HG+M     
Sbjct: 824  LLRERY---RGGQAFYVCPRIDDLAEAK--------DFLDKNVPEMKVAVAHGQMPPSVI 872

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E +M +F +G   +L++TT++E G+D+ +A+ +I+  A+ FGLAQL+QLRGRVGR  ++ 
Sbjct: 873  EDIMSAFYDGKFDILLSTTIVESGLDIPNANTLIVHRADMFGLAQLYQLRGRVGR-SKLR 931

Query: 591  SCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK- 643
            +  L   P    ++  +  RL VL++ E+   GF +A  DL  R  G +LG +QSG  K 
Sbjct: 932  AYALFTLPAQRQITAQAERRLKVLQSLENLGAGFQLASHDLDIRGSGNLLGEEQSGHIKE 991

Query: 644  --FLIAQPELHDSLLEI 658
              F + Q  L + +L +
Sbjct: 992  VGFELYQQMLEEEILNL 1008


>gi|163741099|ref|ZP_02148491.1| transcription-repair coupling factor [Phaeobacter gallaeciensis
           2.10]
 gi|161385452|gb|EDQ09829.1| transcription-repair coupling factor [Phaeobacter gallaeciensis
           2.10]
          Length = 1155

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 138/399 (34%), Positives = 221/399 (55%), Gaps = 23/399 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI ++++D+   + M R++ GDVG GKT VA+ A   A  +G Q  I+AP
Sbjct: 593 PYQETDDQLRAISEVMEDLQSGSPMDRLICGDVGFGKTEVAMRAAFIAAMSGVQVAIVAP 652

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH     +  +   + V  ++  +      K  E +A G   I++GTHAL   S
Sbjct: 653 TTLLARQHAAAFAQRFRGFPLEVRQLSRFVTAKEAAKTREGMAKGTIDIVVGTHALLAKS 712

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 713 VRFQNLGLLIIDEEQHFGVAHKERLKQMRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 772

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  +      VE 
Sbjct: 773 TPPVDRLAIRTY---VSEFDAVTIR-EALLREHYRGGQSFYVVPRITDLPD------VEA 822

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L E     S  + HG+++  D +  M++F +G   +L+ATT++E G+D+  A+ +++
Sbjct: 823 F--LQEQLPELSYVVAHGQLAAGDLDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMVV 880

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
             A+ FGLAQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +
Sbjct: 881 HRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRVRLTPGAEKRLRVLGSLDTLGAGFSL 940

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           A +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 941 ASQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 977


>gi|294778383|ref|ZP_06743806.1| transcription-repair coupling factor [Bacteroides vulgatus PC510]
 gi|294447645|gb|EFG16222.1| transcription-repair coupling factor [Bacteroides vulgatus PC510]
          Length = 1145

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 132/407 (32%), Positives = 214/407 (52%), Gaps = 13/407 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q K+E G   + +  +  ++  +  +  T  Q  A +D   DM     M R++ 
Sbjct: 550 LIRLYSQRKQEKGFSYSPDSFMQHELEASFIYEDTPDQLKATQDAKADMESDRPMDRLVC 609

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++   +  ++    V+ ++   
Sbjct: 610 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFSERLKDFPCKVDYLSRAR 669

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                 + ++ +A G+ +I++GTH +   S+++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 670 SAKDVSRIVKELADGKINILVGTHKIIGKSVKFKDLGLLIIDEEQKFGVSVKEKLRQMKV 729

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L MTATPIPRTL  + +G  D+S I   P  R PI+T +   N  D + E +   +
Sbjct: 730 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNE-DIITEAINFEM 788

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S   + +++  +I+   E    S+++R           + I HG+M     E ++  F N
Sbjct: 789 SRNGQVFFVNNRIQNLVE--LESMIKRNIP-----DCRVCIGHGQMEPEKLEKIIFDFVN 841

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
               +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  P 
Sbjct: 842 YDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPL 901

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             L+  +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 902 TSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 948


>gi|163736366|ref|ZP_02143785.1| transcription-repair coupling factor [Phaeobacter gallaeciensis
           BS107]
 gi|161390236|gb|EDQ14586.1| transcription-repair coupling factor [Phaeobacter gallaeciensis
           BS107]
          Length = 1155

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 138/399 (34%), Positives = 221/399 (55%), Gaps = 23/399 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI ++++D+   + M R++ GDVG GKT VA+ A   A  +G Q  I+AP
Sbjct: 593 PYQETDDQLRAISEVMEDLQSGSPMDRLICGDVGFGKTEVAMRAAFIAAMSGVQVAIVAP 652

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH     +  +   + V  ++  +      K  E +A G   I++GTHAL   S
Sbjct: 653 TTLLARQHAAAFAQRFRGFPLEVRQLSRFVTAKEAAKTREGMAKGTIDIVVGTHALLAKS 712

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 713 VRFQNLGLLIIDEEQHFGVAHKERLKQMRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 772

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  +      VE 
Sbjct: 773 TPPVDRLAIRTY---VSEFDAVTIR-EALLREHYRGGQSFYVVPRITDLPD------VEA 822

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L E     S  + HG+++  D +  M++F +G   +L+ATT++E G+D+  A+ +++
Sbjct: 823 F--LQEQLPELSYVVAHGQLAAGDLDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMVV 880

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
             A+ FGLAQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +
Sbjct: 881 HRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRVRLTPGAEKRLRVLGSLDTLGAGFSL 940

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           A +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 941 ASQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 977


>gi|114565647|ref|YP_752801.1| transcription-repair coupling factor [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336582|gb|ABI67430.1| Transcription-repair coupling factor - superfamily II helicase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 1073

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 204/378 (53%), Gaps = 13/378 (3%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI ++ +DM  +  M R++ GDVG GKT V L A   A+  G Q  I+
Sbjct: 541 EFPFRETPDQLKAINEVKKDMETRRPMDRLVCGDVGYGKTEVFLRAAFKAIMDGKQVAIL 600

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QH++   +       ++E+++     + +++ +E +  G   I+I TH L  
Sbjct: 601 VPTTVLAEQHFQTFTERFAAYPAVIEVLSRFRSNSEQKRIVEDLQKGVVDIVIATHRLLS 660

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L L+++DE+HRFGV Q+ K+        V+ ++ATPIPR+L +   G  D+S 
Sbjct: 661 RDVKFKDLGLLVIDEEHRFGVAQKEKIKALKELVDVISLSATPIPRSLHMALTGLRDLSV 720

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I   P  R PI T ++  N  + ++E +   +    + +++  +IE     +   V E+ 
Sbjct: 721 IETPPPERYPITTYVLEYNE-EIIVEAVMKEIERQGQVFFVHNRIE-----DIYRVKEQL 774

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           + L       IA+ HGRM + +   VM  F NG  +L + TT+IE G+D+ + + II++ 
Sbjct: 775 DELFPGI--KIAVGHGRMKEDELSRVMMDFVNGKYQLFLCTTIIESGLDMPNVNTIIVDE 832

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A+  GLAQL+QLRGRVGR   ++   L Y P   +S+ S  RL+ ++   +   G  IA 
Sbjct: 833 ADKMGLAQLYQLRGRVGRSHRLAYAYLTYRPDWVISEASQKRLNAIREFNELGSGMKIAL 892

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G ILG +Q G
Sbjct: 893 RDLEIRGAGNILGAEQHG 910


>gi|315650057|ref|ZP_07903136.1| transcription-repair coupling factor [Eubacterium saburreum DSM
           3986]
 gi|315487686|gb|EFU77990.1| transcription-repair coupling factor [Eubacterium saburreum DSM
           3986]
          Length = 1112

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 131/375 (34%), Positives = 210/375 (56%), Gaps = 19/375 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  AI+D  +D+     M R++ GDVG GKT +AL      ++ G Q + + P  IL
Sbjct: 568 TYDQLKAIEDAKRDLETGKIMDRLVCGDVGYGKTEIALRTAFKVIQEGYQVLYLVPTTIL 627

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QHY    +  ++  + V +++    +  + K +  +  G   I+IGTH L    +   
Sbjct: 628 ARQHYNTFIQRMKDFPVNVALLSRFNTKKEQTKIVGDLNKGLLDIVIGTHRLLSKDVVPK 687

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           KL LVIVDE+ RFGV+ + KL Q     +VL +TATPIPRTL ++  G  D+S + E P 
Sbjct: 688 KLGLVIVDEEQRFGVRHKEKLKQLCENVNVLTLTATPIPRTLHMSLSGIRDLSVLEEPPV 747

Query: 454 GRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKE--SNFRSVVERFNSL 510
            RKPI+T ++  +  DE + E ++  ++ G + Y++  +I   +E  ++ R+++   N  
Sbjct: 748 DRKPIQTYVMEYH--DETVKEAIRREVARGGQVYYLYNRINNIEEVAAHVRTLLPDIN-- 803

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  +  +HGRM +   E+ M  F NG   +L+ TT++E G+DV +A+ II+ +A+ 
Sbjct: 804 -------VEYVHGRMDERQLEARMVDFINGDVDVLVTTTIVETGLDVPNANTIIVHDADR 856

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDL 625
            GL+QL+QLRGRVGR +  +   L+Y  +  LS+ +  RL  ++  TE   G  IA  DL
Sbjct: 857 LGLSQLYQLRGRVGRSKRSAYAFLMYTGNKLLSEEASKRLKAIREFTELGSGIKIAMRDL 916

Query: 626 KQRKEGEILGIKQSG 640
           + R  G +LG+ Q G
Sbjct: 917 EIRGAGNVLGVTQHG 931


>gi|295099572|emb|CBK88661.1| RecG-like helicase [Eubacterium cylindroides T2-87]
          Length = 497

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 138/432 (31%), Positives = 227/432 (52%), Gaps = 34/432 (7%)

Query: 83  QLQKRRP---YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           +LQK R    + ++  D   EIT+  F R      N F  G+KI++ G + +  N++++ 
Sbjct: 66  RLQKNRSMTKFSVISWDEELEITI--FNRP---WTNQFTFGKKISLFG-VYQGNNKVVV- 118

Query: 140 HPHYIFHNSQDVNF-PL-----IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
                       NF PL     ++ V+SL  GL  +    ++  AL  +  +   +   L
Sbjct: 119 ---------STYNFKPLKEQVGLKPVHSLIEGLKQNDMITMVSNALEFVDQMESLVPLRL 169

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
            +K    +  +A   IH P+   +    + A   L Y E L  Q  +   +   K+ +  
Sbjct: 170 QEKYRLLNYPQALRWIHQPKTQNEL---NQAVRTLKYQEFLCFQCVMQASQANTKEHVHK 226

Query: 254 PINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
              V +G + Q  ++  P++ T  Q+++I+ +L DM     M R++QGDVG GKT+VA+ 
Sbjct: 227 QEKVFDGNMIQTWIQQFPYTLTSDQQTSIEAVLNDMKSSKIMFRLVQGDVGCGKTIVAMT 286

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           A+ A   +  QA  + P  ILA+QHYE ++K    T + V     ++P   +++ L  ++
Sbjct: 287 AIYACYLSNHQAAFLVPTEILARQHYENMQKLGLETCLYV----SSLPTKEKQQILTDLS 342

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +G+  I++GTHALFQ+ + +  L LV+ DEQ RFGV+QR  L +K  +   L+M+ATPIP
Sbjct: 343 NGKIKIVVGTHALFQEQVDFKDLGLVVTDEQQRFGVKQRRSLLEKGKSVDFLMMSATPIP 402

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQ 491
           RT      GD+DIS I   PAGRKP+ T  IP   +  +++  L  +  E ++ Y +CP 
Sbjct: 403 RTYAHFIYGDLDISNIHTMPAGRKPVITKYIPSKSMASILKDILDGIQIEKRQCYVVCPS 462

Query: 492 IEEKKESNFRSV 503
           IE+ +++N RSV
Sbjct: 463 IEDNEDTNLRSV 474


>gi|239815560|ref|YP_002944470.1| transcription-repair coupling factor [Variovorax paradoxus S110]
 gi|239802137|gb|ACS19204.1| transcription-repair coupling factor [Variovorax paradoxus S110]
          Length = 1165

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 145/410 (35%), Positives = 214/410 (52%), Gaps = 21/410 (5%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q++AI  ++QDM     M R++ GDVG GKT VAL A   A+  G Q   +AP 
Sbjct: 612  FQETADQKAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFIAITGGKQVAFLAPT 671

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QHY+ +        + V  ++          A + +A G   I++GTH L   S+
Sbjct: 672  TLLAEQHYQTLVDRFAKWPVKVAEMSRFRSAKEITAAAKGLAEGTVDIVVGTHKLLSQSV 731

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L L+I+DE+HRFGV+ +  +        VL +TATPIPRTL +   G  D+S I  
Sbjct: 732  KFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSVIAT 791

Query: 451  KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R  IKT +   N    VI E +   L  G + Y++  ++E        ++  R   
Sbjct: 792  APQRRLAIKTFV--RNEGTGVIREAVLRELKRGGQVYFLHNEVE--------TIENRRQK 841

Query: 510  LHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L E    + IA+ HG+M + + E VM  F      LL+ +T+IE GIDV  A+ I++  A
Sbjct: 842  LEEILPEARIAVAHGQMPERELERVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRA 901

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEE 623
            + FGLAQLHQLRGRVGR    +   L+      L+K +  RL  ++  E+   GF +A  
Sbjct: 902  DKFGLAQLHQLRGRVGRSHHQAYAYLMVPDTEGLTKQAAQRLDAIQQMEELGSGFYLAMH 961

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            DL+ R  GE+LG  QSG    +    +L++ +L  A +  K    Q+PDL
Sbjct: 962  DLEIRGTGEVLGENQSG--NMMEIGFQLYNEMLSEAVRALK--AGQEPDL 1007


>gi|294786766|ref|ZP_06752020.1| transcription-repair coupling factor [Parascardovia denticolens
            F0305]
 gi|315226389|ref|ZP_07868177.1| transcription-repair coupling factor [Parascardovia denticolens DSM
            10105]
 gi|294485599|gb|EFG33233.1| transcription-repair coupling factor [Parascardovia denticolens
            F0305]
 gi|315120521|gb|EFT83653.1| transcription-repair coupling factor [Parascardovia denticolens DSM
            10105]
          Length = 1206

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 126/430 (29%), Positives = 233/430 (54%), Gaps = 21/430 (4%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W+ + A+ R    E+    + L   R++ +   G   + +    +++    P+  T  Q
Sbjct: 606  DWSQTKAKARKKVKEIAQDLVKLYAARQRTQ---GFAFSPDTPWQRELEEAFPYQETPDQ 662

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM +   M R++ GDVG GKT +A+ A   A++   Q  ++ P  +LAQQH
Sbjct: 663  LTTIDEVKADMEKPIPMDRLICGDVGFGKTEIAVRAAFKAIQDSKQVAVLVPTTLLAQQH 722

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            +E      +   + V++++     A  ++ +E +  G   ++IGTH L    I++  L L
Sbjct: 723  FETFTDRYEGFPVTVKMMSRFQSAAENKETIEGLRDGSVDLVIGTHKLLNPQIKFKDLGL 782

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 783  VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLDTPPEDRLP 842

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHFT 515
            + T +       +V+  ++  L  G + +++  ++++  K  ++ + +V           
Sbjct: 843  VLTYVGAYEDT-QVVAAIRRELLRGGQVFFVHNRVQDISKVAAHIKDLVPE--------- 892

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + I + HG+M +   ++++  F +    +L+ TT++E G+D+ +A+ +I++ A+ FGL+Q
Sbjct: 893  AKIGMAHGKMGEKQLDNIIHDFWHRDIDVLVCTTIVETGLDISNANTLIVDRADRFGLSQ 952

Query: 576  LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRKE 630
            LHQLRGRVGRG E +    LY P  P+++ ++ RLS + +NT    G+ +A +DL+ R  
Sbjct: 953  LHQLRGRVGRGWERAYAYFLYDPAKPMTQTAHDRLSTIAQNTALGAGYDVAMKDLEIRGT 1012

Query: 631  GEILGIKQSG 640
            G +LG +QSG
Sbjct: 1013 GNLLGGEQSG 1022


>gi|120437484|ref|YP_863170.1| transcription-repair coupling factor [Gramella forsetii KT0803]
 gi|117579634|emb|CAL68103.1| transcription-repair coupling factor [Gramella forsetii KT0803]
          Length = 1125

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 133/462 (28%), Positives = 243/462 (52%), Gaps = 18/462 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++  A  + +A  +  L  +++ +K  G   + +  +  ++  +  +  T  Q S
Sbjct: 507 WKNLKKKTKARVKHIAYDLIKLYAKRRLEK--GFKFDPDSYLQHELEASFMYEDTPDQSS 564

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           +   +  DM  +  M R++ GDVG GKT +A+ A   AV+   Q  I+ P  ILA QH+ 
Sbjct: 565 STAAVKADMENERPMDRLVCGDVGFGKTEIAIRAAFKAVDNNKQVAILVPTTILAFQHHR 624

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + ++ +        R++ L  +  G+  IIIGTH L   ++++  L L++
Sbjct: 625 TFTERLKDFPVRIDYLNRFRTAKERKETLADLEAGKVDIIIGTHQLVSKAVKFKDLGLLV 684

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL         L +TATPIPRTL  + +   D+S IT  P  R PI+
Sbjct: 685 VDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLSTITTPPPNRYPIE 744

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + +I  +  + + + +   +  G + ++I  ++E  KE     +++R         + I 
Sbjct: 745 SHVIRFSE-ETIRDAVSYEIQRGGQVFFIHNRVENIKE--VAGMIQRLVP-----DAKIG 796

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M     E +M SF NG   +L++TT++E G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 797 VGHGQMEGKKLEKLMLSFINGEFDVLVSTTIVESGLDVSEANTIFINNANNFGLSDLHQM 856

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   +++++  R++ L+   +   GF IA +DL+ R  G++L
Sbjct: 857 RGRVGRSNKKAFCYFITPPYSAMTEDARKRITALEQFSELGSGFNIAMKDLEIRGAGDLL 916

Query: 635 GIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           G +QSG      F   Q  L++++ E+   + + +  +  D+
Sbjct: 917 GGEQSGFINDIGFDTYQKILNEAIEELKENEFRDLYAETEDV 958


>gi|327188302|gb|EGE55521.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
            CNPAF512]
          Length = 1167

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 132/419 (31%), Positives = 223/419 (53%), Gaps = 28/419 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q++AI+ +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P
Sbjct: 621  PYDETEDQDNAIEAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAVVVP 680

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QH++   +  +   + V+  +  +         + +A G+  I++GTHAL    
Sbjct: 681  TTLLARQHFKTFSERFRGLPVRVQQASRLVGAKDLALTKKEVAEGKTDIVVGTHALLGAG 740

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I++  L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT
Sbjct: 741  IKFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLIT 800

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R  ++T I P + +  + E L      G +++++CP++ +               
Sbjct: 801  TPPVDRMAVRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLAD------------LAD 847

Query: 510  LHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +H    S      +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I
Sbjct: 848  VHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLI 907

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTED---GF 618
            +  A+ FGLAQL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF
Sbjct: 908  VHRADMFGLAQLYQLRGRVGR-SKVRAFALFTLPVNKVLTATADRRLKVLQSLDTLGAGF 966

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
             +A  DL  R  G +LG +QSG  K   F + Q  L +++ E+   D  H     P ++
Sbjct: 967  QLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGWSPQIS 1025


>gi|149194843|ref|ZP_01871937.1| transcription-repair coupling factor [Caminibacter mediatlanticus
           TB-2]
 gi|149135002|gb|EDM23484.1| transcription-repair coupling factor [Caminibacter mediatlanticus
           TB-2]
          Length = 981

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 139/416 (33%), Positives = 226/416 (54%), Gaps = 26/416 (6%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           IA  +++   K+E+  PI +  +  +  ++  PF+ T  Q  AI +I+ D   K  M R+
Sbjct: 438 IAADIVKLAAKREVSSPIKLNFEGVKDFIKKAPFTHTNDQLKAINEIINDFKTK-IMDRL 496

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           L GDVG GKT VA++A      +G Q  ++AP  IL  QHYE  K+  ++T I +  +  
Sbjct: 497 LTGDVGFGKTEVAMVASFIVANSGYQVAVIAPTTILVNQHYESFKERFKDTNIKIAKLDR 556

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 +++ +E++ +G+  I+I THA    +++Y  L LVI+DE+H+FGV+Q+ KL + 
Sbjct: 557 FTSSKGKKEIIEKLKNGEIDILISTHAGL--NVEYKNLGLVIIDEEHKFGVKQKEKLKEL 614

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERL 475
           +   H+L M+ATPIPRTL +       IS + E P G++  KT +   N   I E I R 
Sbjct: 615 SDKVHMLYMSATPIPRTLNMALSQIKSISNLEEAPKGKQNTKTFVKEWNENLIKEAILR- 673

Query: 476 KVVLSEGKKAYWI---CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
              +  G + ++I      IE KK    + +++   +L       I  +H +M+    E 
Sbjct: 674 --EIRRGGQIFYIYNNIAYIEHKK----KELLDILPNLR------ILTLHAKMTPNQIEK 721

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG--EEIS 590
            +  F N    L + TT++E GI + + + +I+ENA+ FG+A LHQ+RGRVGRG  E  +
Sbjct: 722 GLVDFINKKYDLALTTTIVESGIHIPNVNTVIVENADKFGIADLHQIRGRVGRGKHEGYA 781

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK 643
             ++     LS+++  RL  L+       G ++A +DL+ R  G +LG +QSG  K
Sbjct: 782 YFLVKNKEELSEDAKKRLLALEENSFLGSGQVLAMKDLEIRGGGNLLGAEQSGQIK 837


>gi|319408599|emb|CBI82254.1| transcription repair coupling factor [Bartonella schoenbuchensis R1]
          Length = 1166

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 136/409 (33%), Positives = 225/409 (55%), Gaps = 28/409 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q  AI  +L D++    M R++ GDVG GKT VA+ +   A   G Q  ++ P
Sbjct: 616  PYEETEDQIDAIDAVLGDLAAGKPMDRLICGDVGFGKTEVAIRSAFVAALNGYQVAVVVP 675

Query: 330  IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              +L++QHY+ FI ++ Q   + +  ++  +      +  + I++G+  I IGTHAL  +
Sbjct: 676  TTLLSRQHYKTFISRF-QGLPVKIGHVSRLVKAKELAQVKKDISNGRIDIAIGTHALLSE 734

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            SI + +L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S I
Sbjct: 735  SINFSRLGLLIIDEEQHFGVKHKERLKEIKSDIHVLTLSATPIPRTLGLALSGLRELSLI 794

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
               P GR P++T I P    D V+ R +V+L E   G +++++CP+I +         VE
Sbjct: 795  ATPPIGRIPVRTFISP---FDAVVIR-EVLLREYYRGGQSFYVCPRISD------LPYVE 844

Query: 506  RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             +  L  H      A+ HG+M     + +M++F +    +L++TT+IE G+D+  A+ +I
Sbjct: 845  EY--LKTHVPELKFAVAHGQMPVTQFDDIMNAFYDRQYDVLLSTTIIESGLDIPTANTLI 902

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-----PLSKNSYTRLSVLKNTEDGFL 619
            +  A+ FGL+ L+QLRGRVGR ++ +  +  +       P +   +  L  L     GF 
Sbjct: 903  VHRADMFGLSSLYQLRGRVGRSKQRAYALFTFPAGKVLTPTADRRFKVLQSLDTLGAGFQ 962

Query: 620  IAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
            +A  D+  R  G  LG +QSG  K   F + Q  L +++ E+  KD KH
Sbjct: 963  LASYDMDIRGSGNFLGEEQSGHVKEVGFELYQKMLEEAVAEL--KDGKH 1009


>gi|42525214|ref|NP_970594.1| transcription-repair coupling factor [Bdellovibrio bacteriovorus
            HD100]
 gi|39577425|emb|CAE81248.1| transcription-repair coupling factor [Bdellovibrio bacteriovorus
            HD100]
          Length = 1172

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 138/412 (33%), Positives = 220/412 (53%), Gaps = 17/412 (4%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
              P+  T  Q  AI DI +D+     M R++ GDVG GKT VA+ A   A++A  Q  ++
Sbjct: 630  GFPYEETDDQLRAINDIRKDLKSTKPMDRLVCGDVGFGKTEVAMRAAFFAIQARKQVAVL 689

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            AP  +L  QH+E  KK  +   + + ++   +  A  +K L+ +  G+  +I+GTH L  
Sbjct: 690  APTTVLTFQHFETFKKRFEGWPVDIRVLNRFVTPAEVKKTLQDLKDGKVDLIVGTHKLLG 749

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             SI Y  L L+I+DE+ +FGV  + K+ +  T+   L ++ATPIPRTL +  +G  D+S 
Sbjct: 750  SSIAYKDLGLLIIDEEQKFGVTHKEKIKKIKTSVDTLTLSATPIPRTLNMALVGIRDLSL 809

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I   P  R P +T +   +   E I + +   +S G + Y+I  +IE     +   +V+ 
Sbjct: 810  INTAPVDRLPTRTFVTKFD--PETIRKAITAEISRGGQVYFIHNRIE-----SIYGLVDE 862

Query: 507  FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
               +     + I + HG+M + + E  M +F +    +L+ T ++E G+DV  A+ + I+
Sbjct: 863  IRQIVPE--ARIRVAHGQMEEHELEKAMLAFFHHEIDVLVCTAIVESGMDVPRANTMFID 920

Query: 567  NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLK-NTE--DGFLIA 621
             A  FGL+QL+QLRGRVGR +  + C L+   +  L K    RL +++ NT    G  IA
Sbjct: 921  TAHLFGLSQLYQLRGRVGRSKTRAYCYLMMPRNHKLDKEQQERLKIIQENTALGSGIKIA 980

Query: 622  EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            + DL+ R  G ILG +QSG    +    E++  LL  A  +AK    +D DL
Sbjct: 981  QYDLELRGSGNILGEEQSGHVNSV--GYEMYMDLLNEALAEAKGESVEDMDL 1030


>gi|303327133|ref|ZP_07357575.1| transcription-repair coupling factor [Desulfovibrio sp. 3_1_syn3]
 gi|302863121|gb|EFL86053.1| transcription-repair coupling factor [Desulfovibrio sp. 3_1_syn3]
          Length = 1146

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 142/456 (31%), Positives = 235/456 (51%), Gaps = 26/456 (5%)

Query: 193 LLQK-KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           L+Q+ K    +  A + +  P  A   E    A E++A D        L+ M    K   
Sbjct: 531 LIQRFKGTEGVEPALDRLGGPAWAAGKEKARKAIEKIAAD--------LVEMYAYRKVAK 582

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   +  G++  +      F  T  Q  AI+D+L DM +   M R++ GDVG GKT VAL
Sbjct: 583 GFRYDPPGELYHEFEATFGFEETPDQAKAIQDVLDDMDRGEPMDRLICGDVGFGKTEVAL 642

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   A   G Q  ++ P  +LA+QHY+  +       + V +++  + +  +++ L+  
Sbjct: 643 RAAFRAAAEGRQVALLCPTTVLAEQHYQTFRARLAGFPVNVGLLSRFVTKLRQKEVLKAA 702

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A GQ  I+IGTH +    ++   L L+++DE+ RFGV+ + KL        VL +TATPI
Sbjct: 703 AAGQIDILIGTHRILSSDVKLPNLALLVLDEEQRFGVRHKEKLKALKKNVDVLTLTATPI 762

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL--KVVLSEGKKAYWIC 489
           PRTL L+  G  ++S I   P  RKP+ T +  + R D V+ ++  + +  EG + +W+ 
Sbjct: 763 PRTLQLSMSGIRELSIIETAPQDRKPVATAV--LRRDDAVLSKVIEREIEREG-QVFWVY 819

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +++         VVE    L     + + + HG+MS+ + E+ M  F +G   +L+ T+
Sbjct: 820 NRVQ-----GLERVVEYVRKLAPQ--ARVGMAHGQMSETELETTMHKFWHGELDVLVCTS 872

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
           ++E G+D   A+ ++++ A+ FGL QL+QLRGRVGR +  +    +      L+  +  R
Sbjct: 873 IVESGLDFPRANTLVVDQAQMFGLGQLYQLRGRVGRSDRQAYAFFVVPDAERLTAVAEER 932

Query: 608 LSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           L ++ + +    GF +A EDL+ R  G ILG  QSG
Sbjct: 933 LRIIMDMDYLGAGFQVAMEDLRLRGAGNILGEVQSG 968


>gi|253576880|ref|ZP_04854205.1| transcription-repair coupling factor [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251843747|gb|EES71770.1| transcription-repair coupling factor [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 1177

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 208/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI++I +DM Q   M R+L GDVG GKT VA+ A   A   G Q  ++ P
Sbjct: 613 PYEETPDQLRAIEEIKRDMEQSRPMDRLLCGDVGYGKTEVAIRAAFKAAIEGKQVAVLVP 672

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE  ++      I ++ ++    +  + + ++ I  G   I+IGTH +    
Sbjct: 673 TTILAQQHYETFRERFAGYPINIQTLSRFRSRKEQNETIKGIRQGTVDIVIGTHRILSQD 732

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 733 LVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIE 792

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T ++  ++  + E IER    ++ G + Y++  +++         +  + 
Sbjct: 793 TPPENRFPVQTYVVEYSQSLVREAIER---EMARGGQIYYLYNRVQ-----GIHEMAAQI 844

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           + L     + + + HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +
Sbjct: 845 SMLVPE--ARVVVGHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHD 902

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+QLRGRVGR   I+     Y     L++ +  RL  +K  TE   GF IA 
Sbjct: 903 ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQKDKSLTEVAEKRLQSIKEFTELGSGFKIAM 962

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G +LG +Q G
Sbjct: 963 RDLAIRGAGNLLGAEQHG 980


>gi|49475638|ref|YP_033679.1| transcription repair coupling factor [Bartonella henselae str.
            Houston-1]
 gi|49238445|emb|CAF27673.1| Transcription repair coupling factor [Bartonella henselae str.
            Houston-1]
          Length = 1168

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 133/409 (32%), Positives = 225/409 (55%), Gaps = 28/409 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q  AI  +L D++    M R++ GDVG GKT VA+ +   A   G Q  ++ P
Sbjct: 618  PYEETEDQMDAIDAVLDDLASGKPMDRLICGDVGFGKTEVAIRSAFVAALNGYQVAVVVP 677

Query: 330  IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERI----AHGQAHIIIGTHA 384
              +L++QHY+ F+ ++       + +  G+  +  + K L ++    + G   I+IGTHA
Sbjct: 678  TTLLSRQHYKTFVSRFQG-----LPVKIGHASRLVKTKELAQVKKGLSDGTIDIVIGTHA 732

Query: 385  LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
            L  D++ + +L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  +
Sbjct: 733  LLSDAVNFLRLGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRTLGLALSGVRE 792

Query: 445  ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            +S IT  P  R  ++T I P + +  + E L      G +++++CP++     S+   V 
Sbjct: 793  LSLITTPPIDRMAVRTFIAPFDSL-VIRETLLREYYRGGQSFYVCPRV-----SDLGFVE 846

Query: 505  ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            E   +        +A  HG+M     + +M++F +G   +L++TT+IE G+D+  A+ +I
Sbjct: 847  EYLKAYVPELKFVVA--HGQMPAGQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANTLI 904

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619
            +  AE FGLA L+QLRGRVGR ++ +  +  +     L+  +  RL VL++ +    GF 
Sbjct: 905  VHRAEMFGLAALYQLRGRVGRSKQRAYALFTFPSGKVLTPAADRRLKVLQSLDSLGAGFQ 964

Query: 620  IAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
            +A  D+  R  G  LG +QSG  K   F + Q  L D+++E+  KD K 
Sbjct: 965  LASHDMDIRGSGNFLGEEQSGHIKEVGFELYQKMLEDAVVEL--KDGKQ 1011


>gi|114704427|ref|ZP_01437335.1| Mfd, transcription-repair coupling factor [Fulvimarina pelagi
            HTCC2506]
 gi|114539212|gb|EAU42332.1| Mfd, transcription-repair coupling factor [Fulvimarina pelagi
            HTCC2506]
          Length = 1172

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 132/404 (32%), Positives = 224/404 (55%), Gaps = 23/404 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q +AI  ++ D++    M R++ GDVG GKT VAL A   A   G Q  I+ P
Sbjct: 619  PYEETDDQANAIDAVVDDLAAGRPMDRLICGDVGFGKTEVALRAAFVAAMNGLQVAIVVP 678

Query: 330  IGILAQQHYE-FIKKYTQ---NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
              +LA+QH++ F +++     N      +++G    A ++     +  G   I++GTHAL
Sbjct: 679  TTLLARQHFKTFAERFRGLPLNVAQASRLVSGKELAATKKG----VKDGTVDIVVGTHAL 734

Query: 386  FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
                +++  L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++
Sbjct: 735  LGKGVEFKSLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVREL 794

Query: 446  SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            S IT  P  R  ++T I P + +  V E L      G +++++CP++     S+   V E
Sbjct: 795  SLITTPPVDRMAVRTFIAPFDPL-VVRETLLRERYRGGQSFYVCPRV-----SDIAGVKE 848

Query: 506  RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              +         +A+ HG+M+  + + +M++F  G   +L++TT++E G+DV  A+ +I+
Sbjct: 849  FLDDQVPEL--KVAVAHGQMAASELDDIMNAFYEGQYDVLLSTTIVESGLDVPTANTMIV 906

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLI 620
              A+ FGL+QL+Q+RGRVGR ++ +  ++    +   +K +  RL VL++ +    GF +
Sbjct: 907  HRADMFGLSQLYQIRGRVGRSKQRAYALMTIPANKTPTKGADRRLKVLQSLDTLGAGFQL 966

Query: 621  AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            A  DL QR  G +LG +QSG  K +    EL+  +LE A  + K
Sbjct: 967  ATHDLDQRGAGNLLGDEQSGHVKEV--GYELYQQMLEEAVAEMK 1008


>gi|190891739|ref|YP_001978281.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
            CIAT 652]
 gi|190697018|gb|ACE91103.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
            CIAT 652]
          Length = 1167

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 132/419 (31%), Positives = 222/419 (52%), Gaps = 28/419 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q++AI  +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P
Sbjct: 621  PYDETEDQDNAIDAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAVVVP 680

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QH++   +  +   + V+  +  +         + +A G+  I++GTHAL    
Sbjct: 681  TTLLARQHFKTFSERFRGLPVRVQQASRLVGAKDLALTKKEVAEGKTDIVVGTHALLGAG 740

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I++  L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT
Sbjct: 741  IKFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLIT 800

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R  ++T I P + +  + E L      G +++++CP++ +               
Sbjct: 801  TPPVDRMAVRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLAD------------LAD 847

Query: 510  LHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +H    S      +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I
Sbjct: 848  VHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLI 907

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTED---GF 618
            +  A+ FGLAQL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF
Sbjct: 908  VHRADMFGLAQLYQLRGRVGR-SKVRAFALFTLPVNKVLTATADRRLKVLQSLDTLGAGF 966

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
             +A  DL  R  G +LG +QSG  K   F + Q  L +++ E+   D  H     P ++
Sbjct: 967  QLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGWSPQIS 1025


>gi|167629346|ref|YP_001679845.1| transcription-repair coupling factor [Heliobacterium modesticaldum
            Ice1]
 gi|167592086|gb|ABZ83834.1| transcription-repair coupling factor [Heliobacterium modesticaldum
            Ice1]
          Length = 1247

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 134/413 (32%), Positives = 219/413 (53%), Gaps = 17/413 (4%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            LAG +  L   ++ K   G   + +    ++     P+  T  Q  +I ++  DM +   
Sbjct: 599  LAGDLLKLYAARESKP--GYAYSADTPWQKEFEEAFPYEETPDQARSIAEVKTDMEKAKA 656

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R+L GDVG GKT VA+ A   AV+ G Q  I+ P  ILAQQHY   ++      + V+
Sbjct: 657  MDRLLCGDVGYGKTEVAIRAAFKAVQDGKQVAILVPTTILAQQHYNTFRERFSGYPVRVD 716

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            +++       ++ +LE +  G+  I+IGTH L  + + +  L L+I+DE+ RFGV  + K
Sbjct: 717  VLSRFRSPKEQKASLEGLKSGEVDIVIGTHRLVSNDVSFKDLGLLIIDEEQRFGVAHKEK 776

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI- 472
            +        VL ++ATPIPRTL ++ +G  D+S I   P  R P++T ++  N   E+I 
Sbjct: 777  IKHLKENVDVLTLSATPIPRTLHMSLVGLRDMSIIETPPEDRYPVQTYVVEYN--PELIR 834

Query: 473  ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
            E ++  L+ G + Y++  +IE     +   +     +L     + I + HG+M +   E 
Sbjct: 835  EAVRRELNRGGQVYYVRNRIE-----DLDRIARDLGALVP--DARIVVGHGKMREDQLEQ 887

Query: 533  VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            VM  F  G   +L+ TT+IE G+D+ + + +I++ A+  GL+QL+QLRGRVGR   ++  
Sbjct: 888  VMLDFLEGEYDILVCTTIIETGLDIPNVNTLIVDGADLMGLSQLYQLRGRVGRSNRLAYA 947

Query: 593  ILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
               Y     L++ +  RL  ++  TE   GF IA  DL+ R  G +LG +Q G
Sbjct: 948  FFTYRKDKVLTEVAEKRLHAIREFTELGSGFKIAMRDLEIRGVGNLLGPEQHG 1000


>gi|159903468|ref|YP_001550812.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888644|gb|ABX08858.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9211]
          Length = 1169

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 120/375 (32%), Positives = 209/375 (55%), Gaps = 13/375 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           + PT  Q +AIKD+  DM +   M R++ GDVG GKT VA+ A+  A+ +G QA ++AP 
Sbjct: 618 YEPTHDQLTAIKDVKNDMEKPKPMDRLVCGDVGYGKTEVAIRALFKAIISGKQAALLAPT 677

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            IL+QQH+  +        I + ++        +   +E +  G   +++GTH +  + +
Sbjct: 678 TILSQQHWRTLSDRFAPYPIKIALLNRFKTSREKNAIVEELKSGTIDLVVGTHLILSNKV 737

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L++VDE+ RFGV+Q+ ++ Q      VL +TATPIPRTL ++  G  ++S IT 
Sbjct: 738 CFKDLGLLVVDEEQRFGVKQKERIKQFKKNIDVLTLTATPIPRTLYMSLSGVREMSLITT 797

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R+ IKT +IP    + +   +   +  G + +++ P+IE         +  + +++
Sbjct: 798 PPPLRRAIKTHLIPYEE-EAIRSAICQEIDRGGQIFYVVPRIE-----GITDIATKLSNM 851

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  I I HG+M + + ES M +F +    L++ TT++E G+D+   + I+IE+A+ 
Sbjct: 852 IPKI--RILIAHGQMDEGELESSMIAFNDWEADLMLCTTIVESGLDIPRVNTILIEDAQQ 909

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDL 625
           FGL+QL+QLRGRVGR    +   LLY  +  ++  +  RL  ++       G+ ++  D+
Sbjct: 910 FGLSQLYQLRGRVGRSGVQAHAWLLYPSNTTINDKAKQRLQAIQEFSQLGSGYQLSMRDM 969

Query: 626 KQRKEGEILGIKQSG 640
           + R  G ++G++QSG
Sbjct: 970 EIRGVGNLIGLQQSG 984


>gi|255536470|ref|YP_003096841.1| Transcription-repair coupling factor [Flavobacteriaceae bacterium
           3519-10]
 gi|255342666|gb|ACU08779.1| Transcription-repair coupling factor [Flavobacteriaceae bacterium
           3519-10]
          Length = 1138

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 131/414 (31%), Positives = 220/414 (53%), Gaps = 19/414 (4%)

Query: 237 QIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           QIA  L+R   K++   G     +  +  ++  +  +  T  QE A  D+  DM ++  M
Sbjct: 539 QIAFDLIRLYAKRKTAKGFAFTPDSYLQNELEASFIYEDTPDQEKATLDVKTDMEKETVM 598

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT +A+ A   A   G Q  I+ P  ILA QHY   K+  ++  + +  
Sbjct: 599 DRLICGDVGFGKTEIAVRAAFKAATDGKQVAILVPTTILAFQHYRSFKERLKDFPVNISY 658

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +        + + L+ +A G+  I+IGTH L   ++++  L L+I+DE+H+FGV  + KL
Sbjct: 659 MNRFRTAKQKSETLKGLAEGKIDIVIGTHQLVSSTVKFKDLGLLIIDEEHKFGVAVKDKL 718

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-E 473
                    L +TATPIPRTL  + +   D+S I   P  R+P++T I+  +  +E+I +
Sbjct: 719 KTLKNNIDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETSIVGFS--EEIIRD 776

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            +   +    + Y+I  +IE  K+     +++R         + +   HG+M     E  
Sbjct: 777 AISYEIQRDGQVYFINNRIENLKD--IAGLIQRLVP-----DAKVITGHGQMEGKQLERN 829

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F  G   +L++TT++E G+DV +A+ + I +A+ FG+A LHQ+RGRVGR    + C 
Sbjct: 830 VLDFMEGKYDVLVSTTIVESGVDVPNANTMFINDAQRFGMADLHQMRGRVGRSNRKAFCY 889

Query: 594 LLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           L+  PP   ++ ++  RL  ++   D   GF IA +DL+ R  G++LG +QSG 
Sbjct: 890 LI-TPPFDMMTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLLGGEQSGF 942


>gi|237710305|ref|ZP_04540786.1| transcription-repair coupling factor [Bacteroides sp. 9_1_42FAA]
 gi|229455767|gb|EEO61488.1| transcription-repair coupling factor [Bacteroides sp. 9_1_42FAA]
          Length = 1121

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 132/407 (32%), Positives = 215/407 (52%), Gaps = 13/407 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q K+E G   + +  +  ++  +  +  T  Q  A +D   DM     M R++ 
Sbjct: 526 LIKLYSQRKQEKGFSYSPDSFMQHELEASFIYEDTPDQLKATQDAKADMESDRPMDRLVC 585

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++   +  ++    V+ ++   
Sbjct: 586 GDVGFGKTEVAIRAAFKAVTDNKQVAVLVPTTVLAYQHFQTFSERLKDFPCKVDYLSRAR 645

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                 + ++ +A+G+ +I+IGTH +   S+++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 646 STKDVSRIVKELANGKINILIGTHKIIGKSVKFKDLGLLIIDEEQKFGVSVKEKLRQMKV 705

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L MTATPIPRTL  + +G  D+S I   P  R PI+T +   N  D + E +   +
Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNE-DIITEAINFEM 764

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S   + +++  +I+   E    ++++R           + I HG+M     E ++  F N
Sbjct: 765 SRNGQVFFVNNRIQNLVE--LEAMIKRNIP-----DCRVCIGHGQMEPEKLEKIIFDFVN 817

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
               +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  P 
Sbjct: 818 YDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPL 877

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             L+  +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 878 TSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 924


>gi|317485406|ref|ZP_07944285.1| transcription-repair coupling factor [Bilophila wadsworthia 3_1_6]
 gi|316923365|gb|EFV44572.1| transcription-repair coupling factor [Bilophila wadsworthia 3_1_6]
          Length = 1149

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 131/389 (33%), Positives = 212/389 (54%), Gaps = 17/389 (4%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G++ ++   +  F  T  Q  AI+D+L DM +   M R++ GDVG GKT VAL A   A 
Sbjct: 594 GELYREFEASFGFEETPDQAKAIQDVLADMEKPEPMDRLVCGDVGFGKTEVALRAAFRAA 653

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G Q  ++ P  +LA+QHY+  +       + V +++  +  A +++ L+  A GQ  I
Sbjct: 654 SEGRQVALLCPTTVLAEQHYQTFRSRLSGFALNVGLLSRFVSSAKQKEVLKAAASGQIDI 713

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           +IGTH L  D +    L L+I+DE+ RFGV+ + KL +       L +TATPIPRTL L+
Sbjct: 714 LIGTHRLLSDDVVLPNLGLLILDEEQRFGVRHKEKLKKIKKNVDALTLTATPIPRTLQLS 773

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKK 496
             G  ++S I   P  RKP+ T ++  ++  + +VIER    L+   + +W+  +++   
Sbjct: 774 MSGVRELSVIETAPPERKPVSTALLERDKATLRQVIER---ELAREGQVFWVHNRVQ--- 827

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                 VVE    L  +  + I + HG++ +   E  M +F +G   +L+ T ++E G+D
Sbjct: 828 --GLERVVEFVKELAPN--ARIGMAHGQLPEKKLEETMHAFWHGELDILVCTAIVESGLD 883

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS-SCILLYH-PPLSKNSYTRLSVLKNT 614
              A+ +I++ A  FGL QL+QLRGRVGR +  + +C ++     L   +  RL ++ + 
Sbjct: 884 FPRANTLIVDQAHLFGLGQLYQLRGRVGRSDRQAFACFVVSDLERLPAATKERLRIILDM 943

Query: 615 E---DGFLIAEEDLKQRKEGEILGIKQSG 640
           +    GF +A EDL+ R  G ILG  QSG
Sbjct: 944 DYLGAGFQVAMEDLRLRGAGNILGEVQSG 972


>gi|220919566|ref|YP_002494870.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans
            2CP-1]
 gi|219957420|gb|ACL67804.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans
            2CP-1]
          Length = 1233

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 142/424 (33%), Positives = 227/424 (53%), Gaps = 31/424 (7%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNR-------MLRILQGDVGSGKTLVALIAMAAAVEA 320
              P+  T  Q  AI+D+++DM +  +       M R++ GDVG GKT VA+ A   AV A
Sbjct: 626  EFPWEETPDQAKAIEDVVRDMRKGRQGPAAAAPMDRLVCGDVGYGKTEVAMRAAMLAVLA 685

Query: 321  GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              Q  ++ P  +LA QH    ++  +   + +E ++        + AL+  A G+  I++
Sbjct: 686  KKQVAVLVPTTVLAAQHERTFRERFKGYPVRIEAVSRMRTSDEVKHALKAAADGKVDILV 745

Query: 381  GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            GTH L    + +  L LV+VDE+ RFGV  + +L +      VL +TATPIPRTL ++  
Sbjct: 746  GTHRLLAADVSFKDLGLVVVDEEQRFGVAHKERLKKLRRLVDVLTLTATPIPRTLHMSLA 805

Query: 441  GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            G  D+S I   P  R+ I+T ++  +    V E ++  L  G + +++         +  
Sbjct: 806  GVRDLSIIATPPEDRRAIRTFVMKFDPA-AVKEAIETELKRGGQVFFV--------HNRV 856

Query: 501  RSV--VERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            RS+  ++RF  L+E    + + + HG+M +   E VM  F +    +L+AT++IE G+D+
Sbjct: 857  RSIHAMQRF--LNELVPKARVGVAHGQMGEGKLEHVMTQFVDKELDVLLATSIIESGLDI 914

Query: 558  VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE 615
              A+ II+  A+HFGLAQL+Q+RGRVGR  E +   LL     P++K++  RL VL+   
Sbjct: 915  PSANTIIVNRADHFGLAQLYQIRGRVGRSRERAYAYLLVPARRPVTKDAQKRLEVLQRFS 974

Query: 616  D---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ--- 669
            +   GF IA  DL+ R  G +LG  QSG  +      EL+  LL+ A ++ K    +   
Sbjct: 975  ELGAGFKIASHDLELRGAGNLLGKDQSG--QIEAVGFELYQELLDEAVRELKGEAPREEI 1032

Query: 670  DPDL 673
            DPD+
Sbjct: 1033 DPDV 1036


>gi|187918482|ref|YP_001884045.1| transcription-repair coupling factor [Borrelia hermsii DAH]
 gi|119861330|gb|AAX17125.1| transcription-repair coupling factor [Borrelia hermsii DAH]
          Length = 1122

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 211/379 (55%), Gaps = 21/379 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q +AI +I QDM     M R+L GDVG GKT VA+ A   AV    Q  I++P 
Sbjct: 582 YDETPDQLTAISEIKQDMMSLKVMDRLLCGDVGFGKTEVAMRAAFKAVMGTKQVAILSPT 641

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA+QH+   KK  +N  I + +++  + ++  R+ ++ +A G+  IIIGTH +    I
Sbjct: 642 TILAEQHFNTFKKRFKNFPIKIAMMSRFIKKSKEREIIKNLATGEIDIIIGTHKILSKKI 701

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            Y  L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +  
Sbjct: 702 IYKNLGLIIIDEEQRFGVREKEKLKEIKVSVDCLTLSATPIPRSLHMSLIKLRDISVLKT 761

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R  I+T +   +   I   IE     LS   + +++   I+E         ++   
Sbjct: 762 PPQNRIKIETYVEEFSELLIKHAIEH---ELSRDGQVFFVHHNIQE---------LDLIK 809

Query: 509 SLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           ++ E     + IA IH R++    E++M  F N + ++L++TT+IE GID+ +A+ III 
Sbjct: 810 AMLEKVVPYARIATIHARLTGDQIENIMHDFINKSYQVLLSTTIIENGIDIENANTIIIN 869

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIA 621
           NA  FGLAQL+QLRGRVGR  + +    LY     L++++  RL  +    +   GF IA
Sbjct: 870 NANRFGLAQLYQLRGRVGRSSQKAFAYFLYKESSSLNESAIERLRAISEFSELGAGFQIA 929

Query: 622 EEDLKQRKEGEILGIKQSG 640
            +D++ R  G +LG +Q G
Sbjct: 930 MKDMEIRGVGNLLGKEQHG 948


>gi|288917959|ref|ZP_06412318.1| transcription-repair coupling factor [Frankia sp. EUN1f]
 gi|288350614|gb|EFC84832.1| transcription-repair coupling factor [Frankia sp. EUN1f]
          Length = 1189

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 138/380 (36%), Positives = 216/380 (56%), Gaps = 21/380 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF  T  Q SAI ++  DM +   M R++ GDVG GKT +A+ A   AV  G Q  ++ P
Sbjct: 634  PFRETPDQLSAIDEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVGDGKQVAVLVP 693

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L QQHY+   +      ++V+ ++     A +R  L+ +A+G   ++IGTH LF   
Sbjct: 694  TTLLVQQHYQTFAERYAPFPVVVKAMSRFNSAAEQRAVLDGLANGTVDVVIGTHRLFSSE 753

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
             ++  L LVIVDE+ RFGV+ +  L +  TA  VL M+ATPIPRTL ++  G  ++S I 
Sbjct: 754  TKFSDLGLVIVDEEQRFGVEHKEHLKKMRTAVDVLTMSATPIPRTLEMSITGIRELSTID 813

Query: 450  EKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
              P  R P+ T +     +++   I R   +L EG + ++I  ++E  ++  +  R +V 
Sbjct: 814  TPPEERHPVLTSVAAHDPSQVGAAIRR--ELLREG-QVFYIHNRVESIDRAAARLRELVP 870

Query: 506  RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                      + +A  HG+M++   E VM SF      +L+ TT++E G+D+ +A+ +I+
Sbjct: 871  E---------ARVATAHGQMNEDTLEGVMVSFWEKKFDVLVCTTIVESGLDISNANTLIV 921

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
            E A++FGL+QLHQLRGRVGRG E +    LY P  PLS+ ++ RL+ +    D   G  +
Sbjct: 922  ERADNFGLSQLHQLRGRVGRGRERAYAYFLYPPDRPLSETAHDRLATIAQHNDLGAGMAV 981

Query: 621  AEEDLKQRKEGEILGIKQSG 640
            A +DL+ R  G +LG +QSG
Sbjct: 982  AMKDLEIRGAGNLLGGEQSG 1001


>gi|118619716|ref|YP_908048.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
            ulcerans Agy99]
 gi|118571826|gb|ABL06577.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
            ulcerans Agy99]
          Length = 1222

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 201/375 (53%), Gaps = 13/375 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q +AI ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 641  FTETVDQLTAITEVKRDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 700

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH +          + V+ ++     A  R  +E +A G   ++IGTH L Q  +
Sbjct: 701  TLLADQHLQTFTDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGV 760

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LV+VDE+ RFGV+ +  +    +   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 761  RWKDLGLVVVDEEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILT 820

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R P+ T + P +   +V   L+  L    +A+++       + S+      R   L
Sbjct: 821  PPEERYPVLTYVGPHDD-KQVAAALRRELLRDGQAFYV-----HNRASSIDDTAARIRKL 874

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + +   HG+M +   E  +  F      +L+ TT++E G+D+ +A+ +I+E A+ 
Sbjct: 875  VPE--ARVVAAHGQMPEDLLERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADT 932

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
            FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL
Sbjct: 933  FGLSQLHQLRGRVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDL 992

Query: 626  KQRKEGEILGIKQSG 640
            + R  G +LG++QSG
Sbjct: 993  EIRGAGNVLGVEQSG 1007


>gi|253996787|ref|YP_003048851.1| transcription-repair coupling factor [Methylotenera mobilis JLW8]
 gi|253983466|gb|ACT48324.1| transcription-repair coupling factor [Methylotenera mobilis JLW8]
          Length = 1145

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 149/431 (34%), Positives = 220/431 (51%), Gaps = 21/431 (4%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            +      PF  T  Q  AI+++++DM     M R++ GDVG GKT VAL A   AV  G 
Sbjct: 594  EAFCEGFPFEETADQLEAIENVIKDMQSGRPMDRLVCGDVGFGKTEVALRAAFVAVMGGR 653

Query: 323  QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            Q  ++ P  +LA+QH+           I +  I+       + +AL  +  G+  IIIGT
Sbjct: 654  QVAVLVPTTLLAEQHFNNFSDRFAEWPIKIAEISRFRTAKEQAEALRGLEAGEIDIIIGT 713

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L Q  +++  L LVI+DE+HRFGV+Q+ +L        VL +TATPIPRTL +   G 
Sbjct: 714  HRLIQKDVRFKNLGLVILDEEHRFGVRQKEQLKALRAEVDVLTLTATPIPRTLSMAMEGL 773

Query: 443  IDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
             + S I   P  R  IKT     +   I E + R       G + Y++  +++     + 
Sbjct: 774  REFSVIATPPQKRLSIKTFHTEYSEGIIREAVTR---EFKRGGQVYFLHNEVDTIH--SM 828

Query: 501  RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            R  +ER         + IA+ HG++ + + E VM  F +    LL+ TT+IE GIDV  A
Sbjct: 829  REKLERILP-----DARIAVAHGQLRERELEHVMRDFYHQRYNLLLCTTIIETGIDVPTA 883

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED-- 616
            + II+  A+ FGLAQ+HQLRGRVGR    +   LL      ++  +  RL  ++  ED  
Sbjct: 884  NTIIMNKADMFGLAQMHQLRGRVGRSHHQAYAYLLTEAGRKITVQAQKRLDAIQLMEDLG 943

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             GF +A  DL+ R  GE+LG  QSG  + +     L+  +L  A K  K    ++PDL +
Sbjct: 944  AGFHLAMHDLEIRGAGELLGDSQSGEMQEIGFN--LYADMLNHAVKQLK--AGKEPDLNA 999

Query: 676  VRGQSIRILLY 686
              G +  I L+
Sbjct: 1000 PLGVTTEINLH 1010


>gi|183984436|ref|YP_001852727.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
            marinum M]
 gi|183177762|gb|ACC42872.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
            marinum M]
          Length = 1222

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 201/375 (53%), Gaps = 13/375 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 641  FTETVDQLTAITEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 700

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH +          + V+ ++     A  R  +E +A G   ++IGTH L Q  +
Sbjct: 701  TLLADQHLQTFTDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGV 760

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LV+VDE+ RFGV+ +  +    +   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 761  RWKDLGLVVVDEEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILT 820

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R P+ T + P +   +V   L+  L    +A+++       + S+      R   L
Sbjct: 821  PPEERYPVLTYVGPHDD-KQVAAALRRELLRDGQAFYV-----HNRVSSIDDTAARIRKL 874

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + + + HG+M +   E  +  F      +L+ TT++E G+D+ +A+ +I+E A+ 
Sbjct: 875  VPE--ARVVVAHGQMPEDLLERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADT 932

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
            FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL
Sbjct: 933  FGLSQLHQLRGRVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDL 992

Query: 626  KQRKEGEILGIKQSG 640
            + R  G +LG++QSG
Sbjct: 993  EIRGAGNVLGVEQSG 1007


>gi|282890191|ref|ZP_06298721.1| hypothetical protein pah_c014o047 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499848|gb|EFB42137.1| hypothetical protein pah_c014o047 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 1103

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 135/385 (35%), Positives = 202/385 (52%), Gaps = 16/385 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG- 321
           Q    + P+  T+ Q +AI  I +DM     M R++ GDVG GKT VA+ A   AV  G 
Sbjct: 569 QDFEEDFPYEETEDQLNAIASIKEDMQSTKSMDRLICGDVGYGKTEVAMRAAFKAVMDGH 628

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++ P  +LA QHYE   +   N  + + +++        R+ LE++A G   I+IG
Sbjct: 629 KQVALLVPTTVLAMQHYENFIERMSNFPVRIGVLSRFRTPKEIRETLEQVAKGSIDILIG 688

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH L    + ++ L L+I+DE+HRFGV+ +  L +       + ++ATPIPRTL ++ +G
Sbjct: 689 THRLISKDVVFHDLGLIIIDEEHRFGVKAKEHLKKIKMGVDCITLSATPIPRTLYMSLVG 748

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNF 500
             D+S I   P  R PI T+I      D V +  L   LS   +AY I  ++E       
Sbjct: 749 ARDMSVINTPPQDRLPITTIISEPG--DLVFKNALLRELSRDGQAYVIHNRVE-----TI 801

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             V  +   L     + + + HG+MS  + +SV  +FK+G   +L+ATT+IE GID+ +A
Sbjct: 802 FGVASKIKELLPQ--ARVVVGHGQMSADEIDSVFHAFKSGAADILVATTIIESGIDIPNA 859

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH-----PPLSKNSYTRLSVLKNTE 615
           + I+I  A+ FGLA L+QLRGRVGR    +    L       P L++     L+      
Sbjct: 860 NTILINRADQFGLADLYQLRGRVGRWNRRAYAYFLVPNLKSLPQLARKRLHALAEACGYG 919

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSG 640
            G  +A  DL+ R  G ILG +QSG
Sbjct: 920 GGMKLAMHDLEIRGAGNILGTEQSG 944


>gi|94986749|ref|YP_594682.1| transcription-repair coupling factor [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730998|emb|CAJ54361.1| transcription-repair coupling factor (superfamily II helicase)
           [Lawsonia intracellularis PHE/MN1-00]
          Length = 1155

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 129/389 (33%), Positives = 207/389 (53%), Gaps = 17/389 (4%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G + ++   +  F  T  Q  AI+D+L DM +   M R++ GDVG GKT VAL A   A 
Sbjct: 595 GDLYREFEASFGFEETPDQARAIQDVLADMEKSEPMDRLVCGDVGFGKTEVALRAAFRAA 654

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G Q  ++ P  +LA+QHY   +       I V +++  +P   +++  +  + GQ  +
Sbjct: 655 SEGRQVALLCPTTVLAEQHYYTFRSRLSGFGINVGLLSRFVPLQKQKEIFKAASSGQIDV 714

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           ++GTH L  DS+    L L+I+DE+ RFGV+ + KL +      VL +TATPIPRTL L+
Sbjct: 715 LVGTHKLLSDSVSLPNLGLLILDEEQRFGVKHKEKLKKMKKNVDVLTLTATPIPRTLQLS 774

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
             G  ++S I   P  RKP+ T II  N  ++ E++ER    L+   + +W+  +++   
Sbjct: 775 MSGICELSVIETAPPERKPVATAIIKKNKEKLKEILER---ELAREGQVFWVYNRVQ--- 828

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                 +V     L     + + + HG+M +   E  + +F +    +L+ T +IE G+D
Sbjct: 829 --GLEQIVNFVKELVPE--ARVGVAHGQMPEKQLEENIHAFWHAELDILVCTAIIESGLD 884

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNT 614
              A+ +I++ A  FGL QL+QLRGRVGR +  +  + +      LS+ +  RL ++   
Sbjct: 885 FPRANTLIVDQAHMFGLGQLYQLRGRVGRSDRQAYAVFVISDLESLSEQARERLRIILEL 944

Query: 615 E---DGFLIAEEDLKQRKEGEILGIKQSG 640
           +    GF +A EDL+ R  G ILG  QSG
Sbjct: 945 DYLGAGFQVAMEDLRIRGAGNILGEAQSG 973


>gi|221229524|ref|YP_002502940.1| putative transcription-repair coupling factor [Mycobacterium leprae
            Br4923]
 gi|219932631|emb|CAR70345.1| putative transcription-repair coupling factor [Mycobacterium leprae
            Br4923]
          Length = 1224

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 203/375 (54%), Gaps = 13/375 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 651  FTETVDQLTAITEVKGDMEKSVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 710

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH     +      + V+ ++     A  R  ++ +A G   I+IGTH L Q  +
Sbjct: 711  TLLADQHLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGV 770

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L LV+VDE+  FGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 771  CWKDLGLVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 830

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R P+ T + P +         + +L +G+  Y     +  +  S +++       +
Sbjct: 831  PPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFY-----VHNRVSSIYQAAARVCGLV 885

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             E   + + + HG+M +   E+ M  F N    +L+ TT++E G+D+ +A+ +++E A+ 
Sbjct: 886  PE---ARVVVAHGQMPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADT 942

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRL-SVLKNTE--DGFLIAEEDL 625
            FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL ++ +N E   G  +A +DL
Sbjct: 943  FGLSQLHQLRGRVGRSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDL 1002

Query: 626  KQRKEGEILGIKQSG 640
            + R  G +LG++QSG
Sbjct: 1003 EIRGAGNVLGVEQSG 1017


>gi|145222538|ref|YP_001133216.1| transcription-repair coupling factor [Mycobacterium gilvum PYR-GCK]
 gi|145215024|gb|ABP44428.1| transcription-repair coupling factor [Mycobacterium gilvum PYR-GCK]
          Length = 1198

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 126/377 (33%), Positives = 200/377 (53%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 642  FTETVDQLTAITEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 701

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH +          + V  ++     A  R  LE +  G   I+IGTH L Q  +
Sbjct: 702  TLLADQHLQTFTARMTGFPVTVRGLSRFTDPASSRATLEGMKDGSVDIVIGTHRLIQTGV 761

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L LVIVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 762  TWKDLGLVIVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 821

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T +   +   +V   L+  +    +A++I  ++   +   +  R +V    
Sbjct: 822  PPEERYPVLTYVGQHDD-KQVAAALRREMLRDGQAFYIHNRVRTIDSAAAKIRQLVPE-- 878

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + + + HG+M +   E  ++ F N    +L+ TT++E G+D+ +A+ +I+E A
Sbjct: 879  -------ARVVVAHGQMPEEQLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERA 931

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
            + FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +
Sbjct: 932  DTFGLSQLHQLRGRVGRSRERGYAYFLYPPEVPLTETAYDRLATIAQNNELGAGMAVAMK 991

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 992  DLEIRGAGNVLGAEQSG 1008


>gi|320352705|ref|YP_004194044.1| transcription-repair coupling factor [Desulfobulbus propionicus DSM
           2032]
 gi|320121207|gb|ADW16753.1| transcription-repair coupling factor [Desulfobulbus propionicus DSM
           2032]
          Length = 1177

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 124/390 (31%), Positives = 212/390 (54%), Gaps = 19/390 (4%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G + +++  + P+  TK Q  AI +++ D++ +  M R++ GDVG GKT VA  A    +
Sbjct: 609 GDLYRQLEESFPYDETKGQAKAIDEVIDDLTHEQPMDRLICGDVGYGKTEVAARAAFKVI 668

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           E G Q  I+ P  +LA+QH    ++   +  + +  +        +++ + ++  G   +
Sbjct: 669 EDGYQVAILVPTTVLAEQHAATFRERFASFPVEIACLNRFRTVRQQKEIVAQLGAGNIDL 728

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           ++GTH L    +Q+ KL L+IVDE+HRFGV  + ++ +      VL +TATPIPRTL ++
Sbjct: 729 VVGTHRLLSKDVQFKKLGLLIVDEEHRFGVAHKERIKKFKATVDVLTLTATPIPRTLQMS 788

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKK 496
            LG  D+S I+  P  R+ +KT    + R D+++ R  V+  L  G + +++        
Sbjct: 789 LLGIRDLSVISTPPQQRRSVKTF---LARYDQLVIREAVLRELERGGQLFFV-------- 837

Query: 497 ESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            +  +S+    +++      + I + HG+M+    E VM  F N    +L+ TT+IE G+
Sbjct: 838 HNRVQSIHRMADTIAAQVPQARIGVAHGQMAGPQLEDVMVRFINHELDILVCTTIIESGL 897

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN 613
           D+ +A+ I+I  A+H GLA ++QLRGRVGR    +   LL      L+ ++  RL  L +
Sbjct: 898 DIPNANTIVINRADHLGLADIYQLRGRVGRAARQAYAYLLVSSLDHLTPDAQQRLRALMD 957

Query: 614 TED---GFLIAEEDLKQRKEGEILGIKQSG 640
             +   GF +A  DL+ R  G +LG+ QSG
Sbjct: 958 CSELGGGFKLAMNDLQIRGGGNLLGVSQSG 987


>gi|255657458|ref|ZP_05402867.1| transcription-repair coupling factor [Clostridium difficile
           QCD-23m63]
 gi|296449053|ref|ZP_06890843.1| transcription-repair coupling factor [Clostridium difficile NAP08]
 gi|296879876|ref|ZP_06903849.1| transcription-repair coupling factor [Clostridium difficile NAP07]
 gi|296262146|gb|EFH08951.1| transcription-repair coupling factor [Clostridium difficile NAP08]
 gi|296429165|gb|EFH15039.1| transcription-repair coupling factor [Clostridium difficile NAP07]
          Length = 1128

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 207/378 (54%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  AI++  +DM     M R++ GDVG GKT VA+ ++  A     Q  ++ P
Sbjct: 613 PYQETEDQLKAIEETKKDMESSKVMDRLVCGDVGYGKTEVAIRSIFKACMDQKQVAVLVP 672

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHY   K+  +N  + VE+++       +++ +E    G   I+IGTH +    
Sbjct: 673 TTILAQQHYNTFKERFENYPLRVEVLSRFKTPKQQKQIIEDAKKGLVDILIGTHRIISKD 732

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I    L LV++DE+ RFGV+ +  L +  +   VL ++ATPIPRTL ++  G  D+S I 
Sbjct: 733 INLPNLGLVVIDEEQRFGVKHKEALKKIKSTVDVLTLSATPIPRTLHMSLSGIRDMSVIE 792

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           E P  R P+ T +       I + IER    LS G + +++  ++E  +E    S++++ 
Sbjct: 793 EPPQERHPVITYVTESKESVIQDEIER---ELSRGGQVFFVYNRVEHIEE--MASMIQKL 847

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + +A+ HGRM+    E+++  F N    +L+ TT+IE G+D+ +A+ +II +
Sbjct: 848 VP-----DARVAVAHGRMTSKSLENIILGFLNKDYDVLVCTTIIETGMDISNANTMIIYD 902

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GLAQL+QLRGRVGR        LLY     LS+ +  RL  ++  TE   GF IA 
Sbjct: 903 ADKMGLAQLYQLRGRVGRSSRQGYAYLLYEKDKTLSEIAEKRLKAIREFTEFGSGFKIAM 962

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G ILG +Q G
Sbjct: 963 RDLEIRGAGNILGSQQHG 980


>gi|86160747|ref|YP_467532.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans
            2CP-C]
 gi|85777258|gb|ABC84095.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans
            2CP-C]
          Length = 1241

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 142/424 (33%), Positives = 227/424 (53%), Gaps = 31/424 (7%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNR-------MLRILQGDVGSGKTLVALIAMAAAVEA 320
              P+  T  Q  AI+D+++DM +  +       M R++ GDVG GKT VA+ A   AV A
Sbjct: 634  EFPWEETPDQAKAIEDVVRDMRKGRQGPAAAAPMDRLVCGDVGYGKTEVAMRAAMLAVLA 693

Query: 321  GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              Q  ++ P  +LA QH    ++  +   + +E ++        ++AL+  A G+  I++
Sbjct: 694  KKQVAVLVPTTVLAAQHERTFRERFKGYPVRIEAVSRMRTADEVKRALKAAADGKVDILV 753

Query: 381  GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            GTH L    + +  L LV+VDE+ RFGV  + +L +      VL +TATPIPRTL ++  
Sbjct: 754  GTHRLLAADVSFKDLGLVVVDEEQRFGVAHKERLKKLRKLVDVLTLTATPIPRTLHMSLA 813

Query: 441  GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            G  D+S I   P  R+ I+T ++  +    V E ++  L  G + +++         +  
Sbjct: 814  GVRDLSIIATPPEDRRAIRTFVMKFDPA-AVKEAIETELKRGGQVFFV--------HNRV 864

Query: 501  RSV--VERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            RS+  ++RF  L E    + + + HG+M +   E VM  F +    +L+AT++IE G+D+
Sbjct: 865  RSIHAMQRF--LGELVPKARVGVAHGQMGEGKLEHVMTQFVDKELDVLLATSIIESGLDI 922

Query: 558  VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE 615
              A+ II+  A+HFGLAQL+Q+RGRVGR  E +   LL     P++K++  RL VL+   
Sbjct: 923  PSANTIIVNRADHFGLAQLYQIRGRVGRSRERAYAYLLVPARRPVTKDAQKRLEVLQRFS 982

Query: 616  D---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ--- 669
            +   GF IA  DL+ R  G +LG  QSG  +      EL+  LL+ A ++ K    +   
Sbjct: 983  ELGAGFKIASHDLEIRGAGNLLGKDQSG--QIEAVGFELYQELLDEAVRELKGEAPREEI 1040

Query: 670  DPDL 673
            DPD+
Sbjct: 1041 DPDV 1044


>gi|121611273|ref|YP_999080.1| transcription-repair coupling factor [Verminephrobacter eiseniae
           EF01-2]
 gi|121555913|gb|ABM60062.1| transcription-repair coupling factor [Verminephrobacter eiseniae
           EF01-2]
          Length = 1174

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 200/377 (53%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q +AI+ ++QDM     M R++ GDVG GKT VAL A   AV  G Q   +AP 
Sbjct: 622 FEETADQRAAIEAVIQDMVSPRPMDRLVCGDVGFGKTEVALRAAFVAVSGGRQVAFLAPT 681

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QHY+ +        + V  ++          +L  I  G   I++GTH L   +I
Sbjct: 682 TLLAEQHYQTLLDRFGPWPVKVAEVSRFRSGKEVAASLAGIGDGTVDIVVGTHKLLSGAI 741

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +++ L L+I+DE+HRFGV+ + ++ Q      VL +TATPIPRTL +   G  D+S I  
Sbjct: 742 RFHDLGLLIIDEEHRFGVRHKEQMKQLRAEVDVLTLTATPIPRTLGMALEGLRDLSVIAT 801

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R  IKT +   N    VI E +   L  G + Y++  ++E        ++  R   
Sbjct: 802 APQRRLAIKTFV--RNEGTGVIREAVLRELKRGGQVYFLHNEVE--------TIEHRRQR 851

Query: 510 LHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L E    + IA+ HG+M +   E VM  F      LL+ +T+IE GIDV  A+ I++  A
Sbjct: 852 LEEILPEARIAVAHGQMPERALERVMRDFVAQRYNLLLCSTIIETGIDVPTANTILMSRA 911

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLAQLHQLRGRVGR    +   L+      L++ +  RL  ++  E+   GF +A  
Sbjct: 912 DKFGLAQLHQLRGRVGRSHHQAYAYLMVPDTEGLTRQAAQRLDAIQQMEELGSGFYLALH 971

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G++LG  QSG
Sbjct: 972 DLEIRGAGQVLGENQSG 988


>gi|94266121|ref|ZP_01289836.1| Transcription-repair coupling factor [delta proteobacterium MLMS-1]
 gi|93453318|gb|EAT03758.1| Transcription-repair coupling factor [delta proteobacterium MLMS-1]
          Length = 1162

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 134/411 (32%), Positives = 220/411 (53%), Gaps = 15/411 (3%)

Query: 237 QIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           Q+A  L++   K+++  G   +  G++  ++  + P+  T  Q  AI +++ D+     M
Sbjct: 565 QVARDLLKLYAKRQLAEGNRFSPPGEMYHELEESFPYDETPGQLKAIGEVIDDLCSSKPM 624

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VA+ A    VE GGQ  ++ P  +LA+QH    ++      + ++ 
Sbjct: 625 DRLVCGDVGYGKTEVAVRAAFKVVEDGGQVAVLVPTTVLAEQHAATFRERLAGFPVRIDS 684

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +      A +++ +  +A  +  I+IGTH L    +++ +L L+IVDE+HRFGV  + K+
Sbjct: 685 LNRFRSSAEQKRLVADLAAAKIDIVIGTHRLLSADVKFRRLGLLIVDEEHRFGVSHKEKI 744

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +  +   VL +TATPIPRTL L+ LG  D+S I+  P  R+ +KT I    R D+++ +
Sbjct: 745 KKLRSGVDVLTLTATPIPRTLQLSLLGVRDLSVISSPPRLRRAVKTFIA---RHDDLVIK 801

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             ++   G+        +   + S+   V  R   L    T+ +A+ HG+M     E +M
Sbjct: 802 EAIMRELGRDGQVF---LVHNRVSSIHEVATRAQQLVP--TAQVAVAHGQMPARQLEEIM 856

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F      +L+ TT+IE G+D+ DA+ III  A+  GLA+++QLRGRVGR  + +   L
Sbjct: 857 VRFVRREINVLVCTTIIESGLDIPDANTIIITRADRLGLAEIYQLRGRVGRSRQQAYAYL 916

Query: 595 LYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           L      L+  +  RL  L +  +   GF +A  DL+ R  G ILG  QSG
Sbjct: 917 LVPALDDLAGEARHRLQALMDYNELGGGFKLALSDLQIRGGGNILGESQSG 967


>gi|237727824|ref|ZP_04558305.1| transcription-repair coupling factor [Bacteroides sp. D4]
 gi|229434680|gb|EEO44757.1| transcription-repair coupling factor [Bacteroides dorei 5_1_36/D4]
          Length = 1121

 Score =  203 bits (517), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 132/407 (32%), Positives = 214/407 (52%), Gaps = 13/407 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q K+E G   + +  +  ++  +  +  T  Q  A +D   DM     M R++ 
Sbjct: 526 LIKLYSQRKQEKGFSYSPDSFMQHELEASFIYEDTPDQLKATQDAKADMESDRPMDRLVC 585

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++   +  ++    V+ ++   
Sbjct: 586 GDVGFGKTEVAIRAAFKAVTDNKQVAVLVPTTVLAYQHFQTFSERLKDFPCKVDYLSRAR 645

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                 + ++ +A G+ +I+IGTH +   S+++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 646 STKDVSRIVKELADGKINILIGTHKIIGKSVKFKDLGLLIIDEEQKFGVSVKEKLRQMKV 705

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L MTATPIPRTL  + +G  D+S I   P  R PI+T +   N  D + E +   +
Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNE-DIITEAINFEM 764

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S   + +++  +I+   E    ++++R           + I HG+M     E ++  F N
Sbjct: 765 SRNGQVFFVNNRIQNLVE--LEAMIKRNIP-----DCRVCIGHGQMEPEKLEKIIFDFVN 817

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
               +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  P 
Sbjct: 818 YDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPL 877

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             L+  +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 878 ASLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 924


>gi|150024302|ref|YP_001295128.1| transcription-repair coupling factor [Flavobacterium psychrophilum
           JIP02/86]
 gi|149770843|emb|CAL42308.1| Transcription-repair coupling factor [Flavobacterium psychrophilum
           JIP02/86]
          Length = 1117

 Score =  203 bits (517), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 129/408 (31%), Positives = 215/408 (52%), Gaps = 16/408 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  + +++  DM     M R++ GDVG GKT VA+ A   AV+ G Q  I+ P 
Sbjct: 558 YEDTPDQLKSTQEVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAILVPT 617

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QHY    +  ++  + +  +        + + L+ +  G+  I+IGTH L   ++
Sbjct: 618 TILAYQHYRTFTERLKDMPVTINYLNRFKTAKQKAETLKDLEAGKVDIVIGTHQLVSKNV 677

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+IVDE+ +FGV  + KL         L +TATPIPRTL  + +   D+S IT 
Sbjct: 678 IFKDLGLLIVDEEQKFGVNVKDKLKTITQNVDTLTLTATPIPRTLQFSLMAARDLSVITT 737

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R PI+T ++  N  + + + +   +  G + ++I  +IE  KE     +++R    
Sbjct: 738 PPPNRYPIETHVVGFNE-ETIRDAISFEIERGGQVFFINNRIENIKE--VAGMIQRLVP- 793

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + + I HG+M     E +M +F  G   +L+ATT+IE G+DV +A+ I I NA +
Sbjct: 794 ----DAKVGIGHGQMDGKKLEELMLAFMEGEFDVLVATTIIESGLDVPNANTIFINNANN 849

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
           FGL+ LHQ+RGRVGR  + + C  +  P   +++++  R+  L+   +   G  IA +DL
Sbjct: 850 FGLSDLHQMRGRVGRSNKKAFCYFICPPYSVMTEDARKRIQALEQFSELGSGLNIAMKDL 909

Query: 626 KQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQD 670
           + R  G++LG +QSG      F   Q  +++++ E+   + K +   D
Sbjct: 910 EIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYEND 957


>gi|225181416|ref|ZP_03734859.1| transcription-repair coupling factor [Dethiobacter alkaliphilus AHT
            1]
 gi|225167814|gb|EEG76622.1| transcription-repair coupling factor [Dethiobacter alkaliphilus AHT
            1]
          Length = 1177

 Score =  203 bits (517), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 151/453 (33%), Positives = 240/453 (52%), Gaps = 31/453 (6%)

Query: 219  EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EW+   AR + +  EL    +AL   R+    E G   + +    +      P+  T  Q
Sbjct: 576  EWSRVKARVQASVQELAKELLALYAARE---TEPGHAFSPDHSWQKDFEAAFPYEETPDQ 632

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              AI ++ QDM +     R+L GDVG GKT VAL     AV    QA  + P  +LAQQH
Sbjct: 633  LQAIAEVKQDMEKSTVTDRLLCGDVGYGKTEVALRGAFKAVMDDKQAAFLVPTTVLAQQH 692

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y    +  +   + V I++     A +++ ++ +  G   +++GTH +    I++  L  
Sbjct: 693  YHNFVERLEGFPVNVGILSRFQSPAEQKETIKGLKEGTIDLVVGTHRILSKDIRFRDLGF 752

Query: 398  VIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            ++VDE+ RFGV  ++R+K+ +K     VL MTATPIPRTL ++ +G  D+S I   P  R
Sbjct: 753  LVVDEEQRFGVRHKERIKMLKKNL--DVLTMTATPIPRTLHMSLVGVRDMSVIETPPEDR 810

Query: 456  KPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
             PI+T ++  +  D +I E +   L+ G + Y++  +++          + R+ +  +  
Sbjct: 811  YPIQTYVLEYS--DALIREAVMRELNRGGQVYFVHNRVQS---------INRWAAKLQEL 859

Query: 515  TSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               +  A+ HG+M +   E VM  F  G   +L++TT++E G+D+ + + III++A+ FG
Sbjct: 860  MPEVRLAVAHGQMPEDRLEKVMMGFLEGEYDVLLSTTIVEAGLDIPNVNTIIIQDADKFG 919

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQ 627
            LAQL+QLRGRVGR   I+   L Y     L++ +  RL  +K  TE   GF IA  DL+ 
Sbjct: 920  LAQLYQLRGRVGRSNRIAYAYLTYQKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLEI 979

Query: 628  RKEGEILGIKQSGMPKFLIAQP-ELHDSLLEIA 659
            R  G ILG +Q G   F++A   +L+  LLE A
Sbjct: 980  RGAGNILGPEQHG---FMMAVGFDLYVKLLEDA 1009


>gi|315442986|ref|YP_004075865.1| transcription-repair coupling factor Mfd [Mycobacterium sp. Spyr1]
 gi|315261289|gb|ADT98030.1| transcription-repair coupling factor Mfd [Mycobacterium sp. Spyr1]
          Length = 1202

 Score =  203 bits (517), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 124/377 (32%), Positives = 201/377 (53%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 646  FTETVDQLTAITEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 705

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH +          + V+ ++     A  R  +E +  G   I+IGTH L Q  +
Sbjct: 706  TLLADQHLQTFTNRMTGFPVTVKGLSRFTDPAESRATMEGMKDGSVDIVIGTHRLLQTGV 765

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L LVIVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 766  TWKDLGLVIVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 825

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T +   +   ++   L+  +    +A++I  ++   +   +  R +V    
Sbjct: 826  PPEERYPVLTYVGQHDD-KQIAAALRREMLRDGQAFYIHNRVRTIDSAAAKVRQLVPE-- 882

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + + + HG+M +   E  ++ F N    +L+ TT++E G+D+ +A+ +I+E A
Sbjct: 883  -------ARVVVAHGQMPEEQLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERA 935

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
            + FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +
Sbjct: 936  DTFGLSQLHQLRGRVGRSRERGYAYFLYPPEVPLTETAYDRLATIAQNNELGAGMAVAMK 995

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 996  DLEIRGAGNVLGAEQSG 1012


>gi|283768627|ref|ZP_06341539.1| transcription-repair coupling factor [Bulleidia extructa W1219]
 gi|283105019|gb|EFC06391.1| transcription-repair coupling factor [Bulleidia extructa W1219]
          Length = 1142

 Score =  203 bits (517), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 122/408 (29%), Positives = 223/408 (54%), Gaps = 15/408 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +    ++ IG   + + +  +K     P+  T+ Q+ A+ +I +DM     M R+L 
Sbjct: 562 LLNLYSSREQHIGYAFSKDTEETKKFEDAFPYDLTEDQKKAMVEIKKDMESSKPMDRLLC 621

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT V++ A   AV    Q V++ P  ILA+QH+   K   ++  + +E++   +
Sbjct: 622 GDVGFGKTEVSIRASFKAVIDHKQVVVLCPTTILAEQHFSTFKNRYKDFAVRIEVLDRFV 681

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            +  +++ LE +  G   I+IGTH +    + +  L L+++DE+HRFGV+ + K+ +   
Sbjct: 682 QKDKQQEILEDLEKGNVDILIGTHRVLSKDVHFKDLGLLVIDEEHRFGVEHKEKIKELRN 741

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL ++ATPIPRTL ++ +G   +S++   P  R  ++T ++  N+   +++ ++  L
Sbjct: 742 GVDVLALSATPIPRTLQMSLIGVRSLSQLETPPLNRYSVQTYVVEKNQA-LIVDAIQKEL 800

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFK 538
           S   + +++   IE         +  R  +L +    + I ++HG++   + E +M  F 
Sbjct: 801 SRKGQVFYLYNNIE--------FIYNRARTLQKELPDARIGVVHGKLGRDEIEDIMWRFN 852

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-- 596
           +    +L+ TT+IE GID+ + + I+IE+A++FGL+Q++Q++GRVGR   ++   LL   
Sbjct: 853 HQEIDILVTTTIIENGIDIPNVNTILIEDAQNFGLSQIYQMKGRVGRSNRLAYAYLLIPN 912

Query: 597 HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGM 641
              LS+ +  RL  +K       G+ +A  DL  R  G++LG  QSG 
Sbjct: 913 RKQLSEVAQKRLQAVKEFAKLGSGYKVAMRDLTIRGAGDLLGSSQSGF 960


>gi|126701125|ref|YP_001090022.1| transcription-repair coupling factor [Clostridium difficile 630]
 gi|255102711|ref|ZP_05331688.1| transcription-repair coupling factor [Clostridium difficile
           QCD-63q42]
 gi|255308532|ref|ZP_05352703.1| transcription-repair coupling factor [Clostridium difficile ATCC
           43255]
 gi|115252562|emb|CAJ70405.1| Transcription-repair coupling factor (TRCF ATP-dependent helicase
           mfd) [Clostridium difficile]
          Length = 1128

 Score =  203 bits (517), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 207/378 (54%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  AI++  +DM     M R++ GDVG GKT VA+ ++  A     Q  ++ P
Sbjct: 613 PYQETEDQLKAIEETKKDMESSKVMDRLVCGDVGYGKTEVAIRSIFKACMDQKQVAVLVP 672

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHY   K+  +N  + VE+++       +++ +E    G   I+IGTH +    
Sbjct: 673 TTILAQQHYNTFKERFENYPLRVEVLSRFKTPKQQKQIIEDAKKGLVDILIGTHRIISKD 732

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I    L LV++DE+ RFGV+ +  L +  +   VL ++ATPIPRTL ++  G  D+S I 
Sbjct: 733 INLPNLGLVVIDEEQRFGVKHKEALKKIKSTVDVLTLSATPIPRTLHMSLSGIRDMSVIE 792

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           E P  R P+ T +       I + IER    LS G + +++  ++E  +E    S++++ 
Sbjct: 793 EPPQERHPVITYVTESKESVIQDEIER---ELSRGGQVFFVYNRVEHIEE--MASMIQKL 847

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + +A+ HGRM+    E+++  F N    +L+ TT+IE G+D+ +A+ +II +
Sbjct: 848 VP-----DARVAVAHGRMTSKSLENIILGFLNKDYDVLVCTTIIETGMDISNANTMIIYD 902

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GLAQL+QLRGRVGR        LLY     LS+ +  RL  ++  TE   GF IA 
Sbjct: 903 ADKMGLAQLYQLRGRVGRSSRQGYAYLLYEKDKTLSEIAEKRLKAIREFTEFGSGFKIAM 962

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G ILG +Q G
Sbjct: 963 RDLEIRGAGNILGSQQHG 980


>gi|254977126|ref|ZP_05273598.1| transcription-repair coupling factor [Clostridium difficile
           QCD-66c26]
 gi|255094455|ref|ZP_05323933.1| transcription-repair coupling factor [Clostridium difficile CIP
           107932]
 gi|255316206|ref|ZP_05357789.1| transcription-repair coupling factor [Clostridium difficile
           QCD-76w55]
 gi|255518868|ref|ZP_05386544.1| transcription-repair coupling factor [Clostridium difficile
           QCD-97b34]
 gi|255652047|ref|ZP_05398949.1| transcription-repair coupling factor [Clostridium difficile
           QCD-37x79]
 gi|260685021|ref|YP_003216306.1| transcription-repair coupling factor [Clostridium difficile CD196]
 gi|260688679|ref|YP_003219813.1| transcription-repair coupling factor [Clostridium difficile R20291]
 gi|260211184|emb|CBA66656.1| transcription-repair coupling factor [Clostridium difficile CD196]
 gi|260214696|emb|CBE07346.1| transcription-repair coupling factor [Clostridium difficile R20291]
          Length = 1128

 Score =  203 bits (517), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 207/378 (54%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  AI++  +DM     M R++ GDVG GKT VA+ ++  A     Q  ++ P
Sbjct: 613 PYQETEDQLKAIEETKKDMESSKVMDRLVCGDVGYGKTEVAIRSIFKACMDQKQVAVLVP 672

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHY   K+  +N  + VE+++       +++ +E    G   I+IGTH +    
Sbjct: 673 TTILAQQHYNTFKERFENYPLRVEVLSRFKTPKQQKQIIEDAKKGLVDILIGTHRIISKD 732

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I    L LV++DE+ RFGV+ +  L +  +   VL ++ATPIPRTL ++  G  D+S I 
Sbjct: 733 INLPNLGLVVIDEEQRFGVKHKEALKKIKSTVDVLTLSATPIPRTLHMSLSGIRDMSVIE 792

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           E P  R P+ T +       I + IER    LS G + +++  ++E  +E    S++++ 
Sbjct: 793 EPPQERHPVITYVTESKESVIQDEIER---ELSRGGQVFFVYNRVEHIEE--MASMIQKL 847

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + +A+ HGRM+    E+++  F N    +L+ TT+IE G+D+ +A+ +II +
Sbjct: 848 VP-----DARVAVAHGRMTSKSLENIILGFLNKDYDVLVCTTIIETGMDISNANTMIIYD 902

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GLAQL+QLRGRVGR        LLY     LS+ +  RL  ++  TE   GF IA 
Sbjct: 903 ADKMGLAQLYQLRGRVGRSSRQGYAYLLYEKDKTLSEIAEKRLKAIREFTEFGSGFKIAM 962

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G ILG +Q G
Sbjct: 963 RDLEIRGAGNILGSQQHG 980


>gi|57237518|ref|YP_178532.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni RM1221]
 gi|57166322|gb|AAW35101.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni RM1221]
 gi|315057884|gb|ADT72213.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 607

 Score =  203 bits (517), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 149/401 (37%), Positives = 224/401 (55%), Gaps = 23/401 (5%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+++PFS TK Q +A+KDI +D+  K    R++ GDVG GKTLV L   AA +    QA+
Sbjct: 219 LKDLPFSLTKDQLNALKDIEKDLHSKEARRRVIMGDVGCGKTLVLL--GAALMVYPKQAI 276

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA Q YE  KK+  +   I+ I  G      + K LE+    +A++IIGTHAL
Sbjct: 277 LMAPTSILAHQLYEEAKKFLPDFMNILFIKGGK-----KEKDLEQNIQ-KANLIIGTHAL 330

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               ++ +  +LV++DEQHRFG  QR K   L+++  APH +  +ATPIPRTL +     
Sbjct: 331 IH--LESHNAVLVMIDEQHRFGSAQREKIYSLSKQEFAPHFIQFSATPIPRTLSMIQSEL 388

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           ++ S I + P  +K I T  I      ++ E++K  +++  +   I P +       + S
Sbjct: 389 LNFSFIKQMPF-KKDITTYCIQNEDFSKLSEKIKEEIAKNHQIIIIYPLVSASDNIPYLS 447

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +       H+   + + HG+  D  K+ +++ F++    +L++TTV+EVGI +   S+
Sbjct: 448 LEQAKEYWQSHY-EKVFVTHGK--DKQKDEILERFRD-EGNILLSTTVVEVGISLPRLSM 503

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I  AE  GLA LHQLRGRVGR    S+C L  +  L K   +RL    +T DGF IAE
Sbjct: 504 IVIVGAERLGLATLHQLRGRVGRVGLKSTCYL--YTKL-KEIPSRLKEFASTLDGFKIAE 560

Query: 623 EDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
            DLK R  G++L G  Q G  +F        + +LE  +KD
Sbjct: 561 LDLKNRLSGDLLDGFMQHG-NEFKFFDFSKDEEILEKVKKD 600


>gi|212694030|ref|ZP_03302158.1| hypothetical protein BACDOR_03556 [Bacteroides dorei DSM 17855]
 gi|212663562|gb|EEB24136.1| hypothetical protein BACDOR_03556 [Bacteroides dorei DSM 17855]
          Length = 1145

 Score =  203 bits (517), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 132/407 (32%), Positives = 214/407 (52%), Gaps = 13/407 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q K+E G   + +  +  ++  +  +  T  Q  A +D   DM     M R++ 
Sbjct: 550 LIKLYSQRKQEKGFSYSPDSFMQHELEASFIYEDTPDQLKATQDAKADMESDRPMDRLVC 609

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++   +  ++    V+ ++   
Sbjct: 610 GDVGFGKTEVAIRAAFKAVTDNKQVAVLVPTTVLAYQHFQTFSERLKDFPCKVDYLSRAR 669

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                 + ++ +A G+ +I+IGTH +   S+++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 670 STKDVSRIVKELADGKINILIGTHKIIGKSVKFKDLGLLIIDEEQKFGVSVKEKLRQMKV 729

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L MTATPIPRTL  + +G  D+S I   P  R PI+T +   N  D + E +   +
Sbjct: 730 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNE-DIITEAINFEM 788

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S   + +++  +I+   E    ++++R           + I HG+M     E ++  F N
Sbjct: 789 SRNGQVFFVNNRIQNLVE--LEAMIKRNIP-----DCRVCIGHGQMEPEKLEKIIFDFVN 841

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
               +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  P 
Sbjct: 842 YDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPL 901

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             L+  +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 902 TSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 948


>gi|325297801|ref|YP_004257718.1| transcription-repair coupling factor [Bacteroides salanitronis DSM
           18170]
 gi|324317354|gb|ADY35245.1| transcription-repair coupling factor [Bacteroides salanitronis DSM
           18170]
          Length = 1122

 Score =  203 bits (517), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 134/409 (32%), Positives = 218/409 (53%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  + K+E G   + +  +  ++  +  +  T  Q  A +++  DM     M R++ 
Sbjct: 525 LIKLYSRRKQEKGFKYSPDSFLQHELEASFLYEDTPDQLKATQEVKADMESDRPMDRLVC 584

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++   K  +     V+ ++   
Sbjct: 585 GDVGFGKTEVAVRAAFKAVTDNKQVAVLVPTTVLAFQHFQTFSKRLEGMPCKVDYLSRAR 644

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                 + L+ +A G+  I+IGTH +   S+++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 645 TAKDTSRILKELADGKIDILIGTHKIIGKSVKFKDLGLLIIDEEQKFGVSVKEKLRQLKV 704

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I   P  R PI+T +   N  +E+I + +   
Sbjct: 705 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFN--EEIIADAINFE 762

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +S   + +++  +I+   E   ++++ER           + + HG+M   + E ++  F 
Sbjct: 763 MSRNGQVFFVNNRIQNLPE--LKAMIERNIP-----DCRVCVGHGQMKPEELEKIIFDFV 815

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  P
Sbjct: 816 NYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLL-AP 874

Query: 599 PLSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PLS     +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 875 PLSTLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 923


>gi|213691255|ref|YP_002321841.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213522716|gb|ACJ51463.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 944

 Score =  203 bits (517), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 147/404 (36%), Positives = 198/404 (49%), Gaps = 89/404 (22%)

Query: 176 VEALSR-LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            EALSR +P VLPE + K     K+    AEAF  IH+P     F+    A E L Y+E 
Sbjct: 288 AEALSRSIPDVLPESVRK----AKNLMHRAEAFLAIHDPASTARFK---EAIETLRYEEA 340

Query: 234 LAGQIALLLMRKQFKKEIGIPINVE----------GKIA--------------------- 262
              Q +LL  R+   K    P  +           G+ A                     
Sbjct: 341 FVSQTSLLKARQHAHKSSAHPCPLNEALETARASVGEAAAEPSAQPGASERGAATNLPDL 400

Query: 263 ----QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
                + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM  AV
Sbjct: 401 PNLRDRFIASLPFTLTAGQSQVVDDIAADLERDWPMQRLLQGEVGSGKTVVALAAMLQAV 460

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQN------------------------------- 347
            AG QAV++AP  +LA+QHYE I K                                   
Sbjct: 461 GAGYQAVLVAPTQVLAEQHYETISKMVSGLALAQPGAKETDAAADVEGAMGASSASTVSS 520

Query: 348 ----TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++DEQ
Sbjct: 521 SKVSAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQ 580

Query: 404 HRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           HRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T
Sbjct: 581 HRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRT 640

Query: 461 VIIPINRID-----EVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           V+  +N  D      +   ++  +  G++AY +CP+I+   E N
Sbjct: 641 VV--VNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 682



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 103/193 (53%), Gaps = 2/193 (1%)

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS 
Sbjct: 749 IADRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFVGGETPILVSTTVIEVGVDVKQASC 808

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+
Sbjct: 809 IVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQ 868

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSI 681
            DL+ R  G++LG  QSG    L     + D+ ++  AR  A+ +L  DP+L     Q  
Sbjct: 869 ADLEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAEQLLAADPELAD-EVQLA 927

Query: 682 RILLYLYQYNEAF 694
             +L   + NE F
Sbjct: 928 GAVLDFTRGNETF 940


>gi|315635838|ref|ZP_07891100.1| transcription-repair coupling factor [Arcobacter butzleri JV22]
 gi|315479817|gb|EFU70488.1| transcription-repair coupling factor [Arcobacter butzleri JV22]
          Length = 995

 Score =  203 bits (517), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 133/398 (33%), Positives = 214/398 (53%), Gaps = 23/398 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           GI IN + K+ +   ++  F  TK Q+ +IK+I  D+S    M R+L GDVG GKT VA+
Sbjct: 465 GIKINTDKKVLEDFQKSAGFEYTKDQKRSIKEIFDDLSSGRVMDRLLSGDVGFGKTEVAM 524

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A+ A +  G Q + + P  +LA QHY  I+K  ++  I V  + G      +    + +
Sbjct: 525 NALLAVILDGYQTIFVCPTTLLATQHYHSIQKRLESFGIRVAKLDGKTTAKEKTSIKKGL 584

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +G   ++IGTH+L    I+   L LVI+DE+H+FGV+Q+ KL Q     H+  M+ATPI
Sbjct: 585 ENGDIKLVIGTHSLL--DIKTSNLALVIIDEEHKFGVKQKEKLKQLREDVHIFSMSATPI 642

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489
           PRTL L       +S +   P+ R  ++T +   +   I E+I R K     G + +++ 
Sbjct: 643 PRTLNLALSKLKGMSSLLTPPSERLGVRTYVKEYSEKLIKEIILREK---RRGGQLFYVH 699

Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             I   E K+ +  ++V             I IIH ++     E ++++F+N    +L+A
Sbjct: 700 NNIASIEAKKKDIEAIVPNI---------KIDIIHSQIKPEQAEKIIEAFENKEFDILLA 750

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSY 605
           T+++E GI + +A+ III+ A+ FG+A LHQLRGRVGR  +   C  +      ++ ++ 
Sbjct: 751 TSIVESGIHLPNANSIIIDGADRFGIADLHQLRGRVGRSNKEGYCYYVVEDKKSITDDAV 810

Query: 606 TRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
            RL  L++      G  +A +DL+ R  G I+G  QSG
Sbjct: 811 KRLVALESNSYLGSGTALAHQDLEIRGGGNIIGEAQSG 848


>gi|265751112|ref|ZP_06087175.1| transcription-repair coupling factor [Bacteroides sp. 3_1_33FAA]
 gi|263238008|gb|EEZ23458.1| transcription-repair coupling factor [Bacteroides sp. 3_1_33FAA]
          Length = 1121

 Score =  203 bits (517), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 132/407 (32%), Positives = 214/407 (52%), Gaps = 13/407 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q K+E G   + +  +  ++  +  +  T  Q  A +D   DM     M R++ 
Sbjct: 526 LIKLYSQRKQEKGFSYSPDSFMQHELEASFIYEDTPDQLKATQDAKADMESDRPMDRLVC 585

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++   +  ++    V+ ++   
Sbjct: 586 GDVGFGKTEVAIRAAFKAVTDNKQVAVLVPTTVLAYQHFQTFSERLKDFPCKVDYLSRAR 645

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                 + ++ +A G+ +I+IGTH +   S+++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 646 STKDVSRIVKELADGKINILIGTHKIIGKSVKFKDLGLLIIDEEQKFGVSVKEKLRQMKV 705

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L MTATPIPRTL  + +G  D+S I   P  R PI+T +   N  D + E +   +
Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNE-DIITEAINFEM 764

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S   + +++  +I+   E    ++++R           + I HG+M     E ++  F N
Sbjct: 765 SRNGQVFFVNNRIQNLVE--LEAMIKRNIP-----DCRVCIGHGQMEPEKLEKIIFDFVN 817

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
               +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  P 
Sbjct: 818 YDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPL 877

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             L+  +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 878 TSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 924


>gi|222148735|ref|YP_002549692.1| transcription-repair coupling factor [Agrobacterium vitis S4]
 gi|221735721|gb|ACM36684.1| transcription-repair coupling factor [Agrobacterium vitis S4]
          Length = 1175

 Score =  203 bits (517), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 131/402 (32%), Positives = 229/402 (56%), Gaps = 18/402 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q +AI+ +  D++    M R++ GDVG GKT VAL A   A   G Q  ++ P
Sbjct: 627  PYEETEDQMNAIEAVRGDLAAGRPMDRLICGDVGFGKTEVALRAAFVAAMNGIQVAVVVP 686

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QH++   +  +   I ++  +  +         + +A G+  I++GTHAL    
Sbjct: 687  TTLLARQHFKTFSERFRGLPIRIQQASRLVGTKELNLVKKEVAEGKTDIVVGTHALLGSG 746

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I++  L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT
Sbjct: 747  IKFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLIT 806

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R  ++T I P + +  + E L      G +++++CP++ +   ++ ++ +E  + 
Sbjct: 807  TPPVDRMAVRTFISPFDPL-VIRETLMREHYRGGQSFYVCPRLADL--ADIKAFLE--SD 861

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            + E     +AI HG+M+  + E +M++F  G   +L++TT++E G+DV  A+ +I+  A+
Sbjct: 862  VPEL---KVAIAHGQMAAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRAD 918

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTED---GFLIAEE 623
             FGLAQL+Q+RGRVGR  ++ +  LL  P    L+ ++  RL VL++ +    GF +A  
Sbjct: 919  MFGLAQLYQIRGRVGR-SKVRAFALLTLPVNKVLTTSAERRLKVLQSLDTLGAGFQLASH 977

Query: 624  DLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKD 662
            DL  R  G +LG +QSG  K   F + Q  L +++ E+  +D
Sbjct: 978  DLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGED 1019


>gi|332798184|ref|YP_004459683.1| transcription-repair coupling factor [Tepidanaerobacter sp. Re1]
 gi|332695919|gb|AEE90376.1| transcription-repair coupling factor [Tepidanaerobacter sp. Re1]
          Length = 1178

 Score =  203 bits (516), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 137/381 (35%), Positives = 208/381 (54%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AI+++ +DM     M R+L GDVG GKT VA+ A   AV  G Q  ++ P
Sbjct: 627 PYEETPDQLAAIEEVKRDMESPKPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVP 686

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+    +  +   + +E I+       ++  L ++  G+  IIIGTH L Q  
Sbjct: 687 TTILAEQHFHTFAERFKPFPVKIESISRFKSPTEQKHILTKLKTGEIDIIIGTHRLLQKD 746

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L++VDE+ RFGV  + K+ Q      VL +TATPIPRTL +   G  D+S I 
Sbjct: 747 IKFKDLGLLVVDEEQRFGVSHKEKIKQLKKNVDVLTLTATPIPRTLHMAMSGLRDMSIIE 806

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE---EKKESNFRSVV 504
             P  R PI+T ++  N   I + I R    LS   + Y++  +++   E+ +   R V 
Sbjct: 807 TPPEDRFPIQTYVVEHNESLIRDAIMR---ELSRNGQVYYVYNRVQTIHEEAQKLKRLVP 863

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           E          + IA+ HG+M++ + E VM  F      +L+ TT+IE G+D+ + + +I
Sbjct: 864 E----------ARIAVAHGQMNEDELEEVMLGFYEHDYDVLVCTTIIESGLDIPNVNTLI 913

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619
           + +A+  GL+QL+QLRGRVGR    +   L Y     LS+ +  RLS ++  TE   GF 
Sbjct: 914 VTSADRLGLSQLYQLRGRVGRSNRQAFAYLTYKKDKVLSEAAEKRLSAIREFTEFGSGFK 973

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           IA +DL+ R  G ILG +Q G
Sbjct: 974 IALKDLEIRGAGNILGAEQHG 994


>gi|319404239|emb|CBI77832.1| transcription repair coupling factor [Bartonella rochalimae ATCC
            BAA-1498]
          Length = 1166

 Score =  203 bits (516), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 133/405 (32%), Positives = 220/405 (54%), Gaps = 20/405 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  AI  +L D++    M R++ GDVG GKT VA+ +   A   G Q  ++ P
Sbjct: 616  PYEETDDQMDAINAVLDDLASGKPMDRLICGDVGFGKTEVAIRSAFVAALNGYQVAVVVP 675

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L++QHY+      Q   + +  ++  +      +  + I+ G   I+IGTHAL  DS
Sbjct: 676  TTLLSRQHYKTFLARFQGLPVKIAHLSRLVKARELAQIKKGISEGTIDIVIGTHALLNDS 735

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + + +L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT
Sbjct: 736  VSFSRLGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRTLSLALSGLRELSLIT 795

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R  ++T I P + +  + E L      G +++++CP+I +       S VE +  
Sbjct: 796  TPPIDRMAVRTFISPFDLM-VIRETLLREYYRGGQSFYVCPRISD------LSYVEEY-- 846

Query: 510  LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L  H       I HG+M     + +M++F +G   +L++TT+IE G+D+  A+ +I+  A
Sbjct: 847  LKTHVPEIKFVIAHGQMPAGQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANTLIVHRA 906

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEE 623
            E FGL+ L+QLRGRVGR ++ +  +  +     L   +  RL VL++ +    GF +A  
Sbjct: 907  EMFGLSALYQLRGRVGRSKQRAYALFTFPSGKVLLPAADRRLKVLQSLDTLGAGFQLASH 966

Query: 624  DLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
            D+  R  G +LG +QSG  K   F + Q  L +++ E+  KD +H
Sbjct: 967  DMDIRGSGNLLGEEQSGHIKEVGFELYQKMLEEAVAEL--KDGQH 1009


>gi|320457319|dbj|BAJ67940.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 940

 Score =  203 bits (516), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 147/404 (36%), Positives = 198/404 (49%), Gaps = 89/404 (22%)

Query: 176 VEALSR-LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            EALSR +P VLPE + K     K+    AEAF  IH+P     F+    A E L Y+E 
Sbjct: 284 AEALSRSIPDVLPESVRK----AKNLMHRAEAFLAIHDPASTARFK---EAIETLRYEEA 336

Query: 234 LAGQIALLLMRKQFKKEIGIPINVE----------GKIA--------------------- 262
              Q +LL  R+   K    P  +           G+ A                     
Sbjct: 337 FVSQTSLLKARQHAHKSSAHPCPLNEALETARASVGEAAAEPSAQPGASERGAATNLPDL 396

Query: 263 ----QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
                + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM  AV
Sbjct: 397 PNLRDRFIASLPFTLTAGQSQVVDDIAADLERDWPMQRLLQGEVGSGKTVVALAAMLQAV 456

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQN------------------------------- 347
            AG QAV++AP  +LA+QHYE I K                                   
Sbjct: 457 GAGYQAVLVAPTQVLAEQHYETISKMVSGLALAQPGAKETDAAADVEGAMGASSASTVSS 516

Query: 348 ----TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++DEQ
Sbjct: 517 SKVSAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQ 576

Query: 404 HRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           HRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T
Sbjct: 577 HRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRT 636

Query: 461 VIIPINRID-----EVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           V+  +N  D      +   ++  +  G++AY +CP+I+   E N
Sbjct: 637 VV--VNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 678



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 103/193 (53%), Gaps = 2/193 (1%)

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS 
Sbjct: 745 IADRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFVGGETPILVSTTVIEVGVDVKQASC 804

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+
Sbjct: 805 IVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQ 864

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSI 681
            DL+ R  G++LG  QSG    L     + D+ ++  AR  A+ +L  DP+L     Q  
Sbjct: 865 ADLEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAEQLLAADPELAD-EVQLA 923

Query: 682 RILLYLYQYNEAF 694
             +L   + NE F
Sbjct: 924 GAVLDFTRGNETF 936


>gi|319405678|emb|CBI79301.1| transcription repair coupling factor [Bartonella sp. AR 15-3]
          Length = 1166

 Score =  203 bits (516), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 130/404 (32%), Positives = 216/404 (53%), Gaps = 18/404 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  AI  +L D++    M R++ GDVG GKT VA+ +   A   G Q  ++ P
Sbjct: 616  PYEETDDQMDAINAVLDDLASGKPMDRLICGDVGFGKTEVAIRSAFVAALNGYQVAVVVP 675

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L++QHY+      Q   + +  ++  +      +  + I+ G   I+IGTHAL  D+
Sbjct: 676  TTLLSRQHYKTFMVRFQGLPVKIAHLSRLVKPKELAQIKKGISEGTIDIVIGTHALLNDT 735

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + + +L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT
Sbjct: 736  VSFSRLGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRTLSLALSGLRELSLIT 795

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R  ++T I P + +  + E L      G +++++CP+I +       S VE +  
Sbjct: 796  TPPIDRMAVRTFISPFD-VMVIRETLLREYYRGGQSFYVCPRISD------LSYVEEYLK 848

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
             H      I I HG+M     + +M++F +G   +L++TT+IE G+D+  A+ +I+  AE
Sbjct: 849  THVPELKFI-IAHGQMPAGQLDDIMNAFYDGQYNVLLSTTIIESGLDIPTANTLIVHRAE 907

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHP-----PLSKNSYTRLSVLKNTEDGFLIAEED 624
             FGL+ L+QLRGRVGR ++ +  +  +       P++      L  L     GF +A  D
Sbjct: 908  MFGLSALYQLRGRVGRSKQRAYALFTFPSGKVLLPVADRRLKVLQSLDTLGAGFQLASHD 967

Query: 625  LKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
            +  R  G +LG +QSG  K   F + Q  L +++ E+  KD +H
Sbjct: 968  MDIRGSGNLLGEEQSGHIKEVGFELYQKMLEEAVAEL--KDGQH 1009


>gi|189501723|ref|YP_001957440.1| hypothetical protein Aasi_0272 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497164|gb|ACE05711.1| hypothetical protein Aasi_0272 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 1123

 Score =  203 bits (516), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 204/376 (54%), Gaps = 13/376 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q SA  D+ +DM   + M R++ GDVG GKT VA+ A   AV    Q  ++ P 
Sbjct: 561 YEDTPDQASATADVKKDMEAPHPMDRLVCGDVGFGKTEVAIRAAFKAVYDRKQVAVLVPT 620

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QHYE  K    N  + V+ +     +   ++  E  A G+  I+IGTH +   + 
Sbjct: 621 TILALQHYESFKNRLSNFPVDVKYVNRFKSKQEIKRIQEAAAQGKIDILIGTHTILGKAF 680

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L++VDE+ +FGV+ + ++ +      VL +TATPIPRTL  + +G  D+S I  
Sbjct: 681 EFKDLGLLVVDEEQKFGVKAKDRIKEFKVNVDVLTLTATPIPRTLHFSLMGARDLSIIAT 740

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P+ R+P++T I   ++   V + +   +  G + +++  +I     +N + V      L
Sbjct: 741 PPSNRQPVQTSIHTFDK-KIVQDAIHYEVQRGGQVFFVHNRI-----NNIQEVANMLYKL 794

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
              +   I I HG+M     E  M +F  G   +L++T +IE G+D+ +A+ III ++  
Sbjct: 795 VPEY--RIGIAHGQMDGDQLEKKMLTFIAGGYDILVSTNIIESGLDIPNANTIIINDSHM 852

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDL 625
           FGL+ LHQ+RGRVGR  + + C L+  P   L++ +  RLS L+  TE  DGF +A  DL
Sbjct: 853 FGLSDLHQMRGRVGRSNKKAFCYLIAPPNSSLTEEARKRLSTLEEFTELGDGFKVAMRDL 912

Query: 626 KQRKEGEILGIKQSGM 641
             R  G +LG +QSG 
Sbjct: 913 DIRGAGNLLGAEQSGF 928


>gi|254882671|ref|ZP_05255381.1| transcription-repair coupling factor [Bacteroides sp. 4_3_47FAA]
 gi|254835464|gb|EET15773.1| transcription-repair coupling factor [Bacteroides sp. 4_3_47FAA]
          Length = 1145

 Score =  203 bits (516), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 131/407 (32%), Positives = 214/407 (52%), Gaps = 13/407 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q K+E G   + +  +  ++  +  +  T  Q  A +D   DM     M R++ 
Sbjct: 550 LIRLYSQRKQEKGFSYSPDSFMQHELEASFIYEDTPDQLKATQDAKADMESDRPMDRLVC 609

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++   +  ++    V+ ++   
Sbjct: 610 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFSERLKDFPCKVDYLSRAR 669

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                 + ++ +A G+ +I++GTH +   S+++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 670 SAKDVSRIVKELADGKINILVGTHKIIGKSVKFKDLGLLIIDEEQKFGVSVKEKLRQMKV 729

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L MTATPIPRTL  + +G  D+S I   P  R PI+T +   N  D + E +   +
Sbjct: 730 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNE-DIITEAINFEM 788

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S   + +++  +I+   E    ++++R           + I HG+M     E ++  F N
Sbjct: 789 SRNGQVFFVNNRIQNLVE--LEAMIKRNIP-----DCRVCIGHGQMEPEKLEKIIFDFVN 841

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
               +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  P 
Sbjct: 842 YDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPL 901

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             L+  +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 902 TSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 948


>gi|309808651|ref|ZP_07702543.1| DEAD/DEAH box helicase [Lactobacillus iners LactinV 01V1-a]
 gi|308168125|gb|EFO70251.1| DEAD/DEAH box helicase [Lactobacillus iners LactinV 01V1-a]
          Length = 285

 Score =  203 bits (516), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 107/285 (37%), Positives = 173/285 (60%), Gaps = 1/285 (0%)

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
           + D++   RM R+LQGDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I   
Sbjct: 1   MADLASAKRMNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAI 60

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
            +   +   ++T +     +++    +  G  +++IGTHA+ QD + + KL LVI+DEQH
Sbjct: 61  LEPLGVRCALLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQH 120

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           RFGV QR +L  K     +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I 
Sbjct: 121 RFGVDQRKQLLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWIT 180

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHG 523
            + + +++  +   L +G + Y + P I E  + + ++    +  +  +F S  +A++HG
Sbjct: 181 SDSLRKLLTLMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHG 240

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +M    K  +MD+F +G+ K+LI T+VIEVG+DV +A+++II N 
Sbjct: 241 KMGSSQKSDIMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNC 285


>gi|325270511|ref|ZP_08137111.1| transcription-repair coupling factor [Prevotella multiformis DSM
           16608]
 gi|324987087|gb|EGC19070.1| transcription-repair coupling factor [Prevotella multiformis DSM
           16608]
          Length = 1182

 Score =  203 bits (516), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 131/400 (32%), Positives = 213/400 (53%), Gaps = 15/400 (3%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++E G   + +  +  ++  +  +  T  Q  A +++ QDM     M R++ GDVG GKT
Sbjct: 589 RREKGFAFSPDSFMQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKT 648

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A     Q  ++ P  +LA QHY+  +K  ++  + V+ ++        R+ 
Sbjct: 649 EVAIRAAFKAAADNKQVAVLVPTTVLAFQHYQTFRKRLKDMPVRVDYLSRARSPKQTRQV 708

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  +A G+  I++GTH L   S++++ L L+I+DE+ +FGV  + KL Q  T    L M+
Sbjct: 709 LADLAEGKIDILVGTHKLIGKSVKWHDLGLLIIDEEQKFGVATKEKLRQLKTNVDTLTMS 768

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486
           ATPIPRTL  + +G  D+S +   P  R PI+T I   +   EVI + +   +S   + Y
Sbjct: 769 ATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIASFSH--EVIADAVNFEMSRNGQIY 826

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           ++  +I     SN + + +            +A+ HG+M   + E  +  F N    +L+
Sbjct: 827 FVNDRI-----SNLQEIADLIRKYVPD--CRVAVGHGQMKPEELEETVMGFMNYDYDVLL 879

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNS 604
           +TT++E GID+ +A+ III +A  FGL+ LHQ+RGRVGR  + + C LL  P   L+  +
Sbjct: 880 STTIVENGIDIPNANTIIINDAHRFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNPEA 939

Query: 605 YTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             RL  L+   D   GF +A +DL  R  G +LG +QSG 
Sbjct: 940 RRRLEALETFSDLGSGFNLAMQDLDIRGAGNLLGAEQSGF 979


>gi|224418280|ref|ZP_03656286.1| transcription-repair coupling factor [Helicobacter canadensis MIT
           98-5491]
 gi|313141813|ref|ZP_07804006.1| transcription-repair coupling factor [Helicobacter canadensis MIT
           98-5491]
 gi|313130844|gb|EFR48461.1| transcription-repair coupling factor [Helicobacter canadensis MIT
           98-5491]
          Length = 1004

 Score =  203 bits (516), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 133/380 (35%), Positives = 207/380 (54%), Gaps = 19/380 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  TK Q  AI++I +D+S    M R+L GDVG GKT VA+ AM A   +G QA I+ P 
Sbjct: 494 FVYTKDQNQAIQEIFKDLSSGRVMDRLLSGDVGFGKTEVAMNAMLACFLSGYQAAIITPT 553

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+  IK   +   I V  +   +    ++  LE +  G   +++GTHAL   + 
Sbjct: 554 TLLAYQHFLTIKARFEAFGIKVARLDRYVSAKEKKSILEGLKQGSVDVVVGTHALL--NA 611

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            + KL L++VDE+H+FGV+Q+ K+ + +   H+L M+ATPIPRTL +       +S++ E
Sbjct: 612 VFKKLALIVVDEEHKFGVKQKEKIKEISQNIHLLSMSATPIPRTLNMALSHIKGLSELKE 671

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P+ R P +T +   +     EV+ R    L  G + ++I   I     S+     E   
Sbjct: 672 APSQRLPTRTFVKTYSDSLFKEVVLR---ELRRGGQVFYIHNNI-----SSINQRKEEIL 723

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           S+  H    IAI+H ++S  + E ++  F  G   LL+ T+++E GI + +A+ I+++ +
Sbjct: 724 SIMPHL--KIAILHSQISAQESEDIIMEFAKGGFNLLLCTSIVESGIHLPNANTILVDRS 781

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEE 623
           + FG+A LHQLRGRVGRG +   C  L   P  +++ +  RL  L+       G  +A  
Sbjct: 782 DCFGIADLHQLRGRVGRGSKEGFCYFLIEDPNKITQEAQKRLMALEKNAYLGSGGALAYH 841

Query: 624 DLKQRKEGEILGIKQSGMPK 643
           DL+ R  G +LG  QSG  K
Sbjct: 842 DLEIRGGGNLLGEAQSGHIK 861


>gi|86153829|ref|ZP_01072032.1| ATP-dependent DNA helicase recG [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85842790|gb|EAQ60002.1| ATP-dependent DNA helicase recG [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 607

 Score =  203 bits (516), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 149/401 (37%), Positives = 224/401 (55%), Gaps = 23/401 (5%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+++PFS TK Q +A+KDI +D+  K    R++ GDVG GKTLV L   AA +    QA+
Sbjct: 219 LKDLPFSLTKDQLNALKDIEKDLHSKEARRRVIMGDVGCGKTLVLL--GAALMVYPKQAI 276

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA Q YE  KK+  +   I+ I  G      + K LE+    +A++IIGTHAL
Sbjct: 277 LMAPTSILAHQLYEEAKKFLPDFMNILFIKGGK-----KEKDLEQNIQ-KANLIIGTHAL 330

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               ++ +  +LV++DEQHRFG  QR K   L+++  APH +  +ATPIPRTL +     
Sbjct: 331 IH--LESHNAVLVMIDEQHRFGSAQREKIYSLSKQEFAPHFIQFSATPIPRTLSMIQSEL 388

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           ++ S I + P  +K I T  I      ++ E++K  +++  +   I P +       + S
Sbjct: 389 LNFSFIKQMPF-KKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLVSASDNIPYLS 447

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +       H+   + + HG+  D  K+ +++ F++    +L++TTV+EVGI +   S+
Sbjct: 448 LEQAKEYWQSHY-EKVFVTHGK--DKQKDEILERFRD-EGNILLSTTVVEVGISLPRLSM 503

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I  AE  GLA LHQLRGRVGR    S+C L  +  L K   +RL    +T DGF IAE
Sbjct: 504 IVIVGAERLGLATLHQLRGRVGRVGLKSTCYL--YTKL-KEIPSRLKEFASTLDGFKIAE 560

Query: 623 EDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
            DLK R  G++L G  Q G  +F        + +LE  +KD
Sbjct: 561 LDLKNRLSGDLLDGFMQHG-NEFKFFDFSKDEEILEKVKKD 600


>gi|319407247|emb|CBI80886.1| transcription repair coupling factor [Bartonella sp. 1-1C]
          Length = 1166

 Score =  203 bits (516), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 133/405 (32%), Positives = 220/405 (54%), Gaps = 20/405 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  AI  +L D++    M R++ GDVG GKT VA+ +   A   G Q  ++ P
Sbjct: 616  PYEETDDQMDAINAVLDDLASGKPMDRLICGDVGFGKTEVAIRSAFVAALNGYQVAVVVP 675

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L++QHY+      Q   + +  ++  +      +  + I+ G   I+IGTHAL  DS
Sbjct: 676  TTLLSRQHYKTFLARFQGLPVKIAHLSRLVKARELAQIKKGISEGTIDIVIGTHALLNDS 735

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + + +L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT
Sbjct: 736  VSFSRLGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRTLSLALSGLRELSLIT 795

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R  ++T I P + +  + E L      G +++++CP+I +       S VE +  
Sbjct: 796  TPPIDRMAVRTFISPFDLM-VIRETLLREYYRGGQSFYVCPRISD------LSYVEEY-- 846

Query: 510  LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L  H       I HG+M     + +M++F +G   +L++TT+IE G+D+  A+ +I+  A
Sbjct: 847  LKTHVPEIKFVIAHGQMPAGQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANTLIVHRA 906

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEE 623
            E FGL+ L+QLRGRVGR ++ +  +  +     L   +  RL VL++ +    GF +A  
Sbjct: 907  EMFGLSALYQLRGRVGRSKQRAYALFTFPSGKVLLPAADRRLKVLQSLDTLGAGFQLASH 966

Query: 624  DLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
            D+  R  G +LG +QSG  K   F + Q  L +++ E+  KD +H
Sbjct: 967  DMDIRGSGNLLGEEQSGHIKEVGFELYQKMLEEAVAEL--KDGQH 1009


>gi|284928643|ref|YP_003421165.1| transcription-repair coupling factor [cyanobacterium UCYN-A]
 gi|284809102|gb|ADB94807.1| transcription-repair coupling factor [cyanobacterium UCYN-A]
          Length = 1151

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 213/385 (55%), Gaps = 16/385 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG- 321
           Q++  + P+  T  Q  AI+++  D+     M R++ GDVG GKT VA+ A+   V +G 
Sbjct: 597 QELEDSFPYQATPDQVQAIREVKIDLESNRPMDRLICGDVGFGKTEVAIRAIFKVVTSGH 656

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q V +AP  IL QQHY  ++       I + ++      + ++  +ER+  G+  I++G
Sbjct: 657 KQVVFLAPTTILTQQHYNTLRTRFAPYPISIGLLNRFRTTSEKKDIIERLTTGELDIVVG 716

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T  L   +I++  L L+++DE+ RFGV  + K+        VL +TATPIPRTL ++  G
Sbjct: 717 TQQLLGKNIKFKDLGLLVIDEEQRFGVNHKEKIRTIKANVDVLTLTATPIPRTLHMSLSG 776

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             ++S I+  P  R+ IKT +   +  + V   ++  L  G + +++ P+IE   E    
Sbjct: 777 IREMSLISTPPPSRRSIKTHLSSYDP-NLVKAAVRAELDRGGQVFYVVPRIEHIDE---- 831

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            +V +   +     + I + HG+M   + E  M SF NG   +L+ TT+IE G+D+   +
Sbjct: 832 -LVLQLKRMIPD--AKILVAHGQMDVNNLELTMLSFNNGDADILVCTTIIESGLDIPKVN 888

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED-- 616
            IIIE+A+ FGL+QL+QLRGRVGR   I +   L++P    L+ N+  RL+ L+   +  
Sbjct: 889 TIIIEDAQKFGLSQLYQLRGRVGRS-GIQAHAWLFYPSRSELTDNALKRLNALQEFSELG 947

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640
            G+ +A  DL+ R  G +LG +QSG
Sbjct: 948 SGYHLATRDLEIRGAGNLLGAEQSG 972


>gi|169335546|ref|ZP_02862739.1| hypothetical protein ANASTE_01961 [Anaerofustis stercorihominis DSM
            17244]
 gi|169258284|gb|EDS72250.1| hypothetical protein ANASTE_01961 [Anaerofustis stercorihominis DSM
            17244]
          Length = 1150

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 141/479 (29%), Positives = 249/479 (51%), Gaps = 32/479 (6%)

Query: 220  W-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            W  +  + R A  EL    I L   R++ K   G   + +    ++   N  +  T+ QE
Sbjct: 557  WENTKNKTRKAVKELAKEYITLYAKRREIK---GFAFSADTPWQKEFEDNFGYELTEDQE 613

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              ++++ +DM +   M R++ GDVG GKT VA  A+  AV  G Q  ++ P  ILA QHY
Sbjct: 614  RCVREVKEDMEKPYPMDRLICGDVGFGKTEVAARAIFKAVMDGKQCAVLVPTTILAMQHY 673

Query: 339  E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
              F++++ ++  + +E+++    +    + ++++  G+  I+IGTH L  D++ +  L L
Sbjct: 674  NTFVERF-KDFPVKIEMLSRFKTKKEENRIIDKLERGKVDIVIGTHKLLSDNVNFKDLGL 732

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            ++VDE+ RFGV  + KL         L ++ATPIPRTL ++ +G  D+S I + P  R+ 
Sbjct: 733  LVVDEEQRFGVAHKDKLKLLKENVDTLTLSATPIPRTLNMSLIGIRDLSTIEKPPKEREE 792

Query: 458  IKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEH 513
             +T +I  +   I + I R    LS G + +++   ++  EK     R ++         
Sbjct: 793  TETYVIEYDDYIIKDAINR---ELSRGGQVFFVYNSVKNAEKTCLKLRKLIPGL------ 843

Query: 514  FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +   +G+M + + E  M  F N    +L+ T ++E G+++++A+ +II+   + GL
Sbjct: 844  ---KVEFANGQMPERELEKTMFRFLNKEFDVLVCTAIVENGLNILNANTMIIKEGNNLGL 900

Query: 574  AQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            +QL+QLRGRVGR  + + C + Y     L++ +  RL  +        GF IA  DL+ R
Sbjct: 901  SQLYQLRGRVGRSNKNAYCYVTYEKDKALNEVAMKRLKAINEFTKFGSGFQIAIRDLQIR 960

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
              G +LG  QSG   F     EL+  +L+ A K++K    ++P  T++   +I+I  Y+
Sbjct: 961  GSGNLLGANQSG--HFTNVGYELYTKMLQEALKESKGEAQKEPVETTI---NIKINAYI 1014


>gi|254475764|ref|ZP_05089150.1| transcription-repair coupling factor [Ruegeria sp. R11]
 gi|214030007|gb|EEB70842.1| transcription-repair coupling factor [Ruegeria sp. R11]
          Length = 1153

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/399 (34%), Positives = 221/399 (55%), Gaps = 23/399 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI +++ D++    M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 593 PYQETDDQLRAIGEVMADLNSGMPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVVAP 652

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH     +  +   + V  ++  +      K  E +A+G   I++GTHAL   +
Sbjct: 653 TTLLARQHAAGFAQRFRGFPLEVRQLSRFVTAKEAAKTREGLANGTVDIVVGTHALLAKT 712

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 713 VKFQNLGLLIIDEEQHFGVAHKERLKQMRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 772

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  E      +E 
Sbjct: 773 TPPVDRLAIRTY---VSEFDAVTIR-EALLREHYRGGQSFYVVPRITDLPE------IEA 822

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L E     S  + HG+++  D +  M++F +G   +L+ATT++E G+D+  A+ +++
Sbjct: 823 F--LQEQLPELSYVVAHGQLAAGDLDERMNAFYDGKYDVLLATTIVESGLDIPTANTMVV 880

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
             A+ FGLAQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +
Sbjct: 881 HRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRVRLTPGAEKRLRVLGSLDTLGAGFSL 940

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           A +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 941 ASQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 977


>gi|157414757|ref|YP_001482013.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385721|gb|ABV52036.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747396|gb|ADN90666.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           M1]
 gi|315931095|gb|EFV10069.1| DEAD/DEAH box helicase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 607

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 150/401 (37%), Positives = 223/401 (55%), Gaps = 23/401 (5%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+++PFS TK Q +A+KDI +D+  K    R++ GDVG GKTLV L   AA +    QA+
Sbjct: 219 LKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLL--GAALMVYPKQAI 276

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA Q YE  KK+  +   I+ I  G      + K LE+    +A++IIGTHAL
Sbjct: 277 LMAPTSILAYQLYEEAKKFLPDFMNILFIKGGK-----KEKDLEQNIQ-KANLIIGTHAL 330

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               ++ +  +LV++DEQHRFG  QR K   L ++  APH +  +ATPIPRTL +     
Sbjct: 331 IH--LESHNAVLVMIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLSMIQSEL 388

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           ++ S I + P  +K I T  I      ++ E++K  +S+  +   I P +       + S
Sbjct: 389 LNFSFIKQMPF-KKDITTYCIQNEGFSKLSEKIKEEISKNHQIIIIYPLVSASDNIPYLS 447

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +       H+   + + HG+  D  K+ +++ F++    +L++TTV+EVGI +   S+
Sbjct: 448 LEQAKEYWQSHY-EKVFVTHGK--DKQKDEILERFRD-EGNILLSTTVVEVGISLPRLSM 503

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I  AE  GLA LHQLRGRVGR    S+C L  +  L K   +RL    +T DGF IAE
Sbjct: 504 IVIVGAERLGLATLHQLRGRVGRVGLKSTCYL--YTKL-KEIPSRLKEFASTLDGFKIAE 560

Query: 623 EDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
            DLK R  G++L G  Q G  +F        + +LE  +KD
Sbjct: 561 LDLKNRLSGDLLDGFMQHG-NEFKFFDFSKDEEILEKVKKD 600


>gi|56696942|ref|YP_167304.1| transcription-repair coupling factor [Ruegeria pomeroyi DSS-3]
 gi|56678679|gb|AAV95345.1| transcription-repair coupling factor [Ruegeria pomeroyi DSS-3]
          Length = 1142

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/400 (34%), Positives = 216/400 (54%), Gaps = 25/400 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI D++ D+     M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 586 PYQETDDQLRAIGDVMDDLHSGMPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVIAP 645

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH    +   +   + V  ++  +     ++  E +A G   I+IGTHAL    
Sbjct: 646 TTLLARQHAASFRDRFRGFPLEVRQLSRFISAKEAQQTREGLARGTVDIVIGTHALLAKG 705

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 706 IRFQNLGLLIIDEEQHFGVGHKERLKQLRSDVHVLTLTATPIPRTLQLSLTGVRDLSIIG 765

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  +      +E 
Sbjct: 766 TPPIDRLAIRTY---VSEFDAVTVR-EALLREHYRGGQSFYVVPRITDLPD------IEA 815

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L E     +  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++
Sbjct: 816 F--LKEQLPELTYVVAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVV 873

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-----PLSKNSYTRLSVLKNTEDGFLI 620
             A+ FGLAQL+Q+RGRVGR +  +   L   P     P ++     L+ L     GF +
Sbjct: 874 HRADMFGLAQLYQIRGRVGRSKARAYAYLTTKPRARLTPAAEKRLRVLASLDTLGAGFSL 933

Query: 621 AEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIA 659
           A +DL  R  G +LG +QSG MP       EL+ S+LE A
Sbjct: 934 ASQDLDIRGAGNLLGEEQSGQMPDVGY---ELYQSMLEEA 970


>gi|150004807|ref|YP_001299551.1| transcription-repair coupling factor [Bacteroides vulgatus ATCC
           8482]
 gi|319641987|ref|ZP_07996654.1| transcription-repair coupling factor [Bacteroides sp. 3_1_40A]
 gi|149933231|gb|ABR39929.1| transcription-repair coupling factor [Bacteroides vulgatus ATCC
           8482]
 gi|317386412|gb|EFV67324.1| transcription-repair coupling factor [Bacteroides sp. 3_1_40A]
          Length = 1121

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 131/407 (32%), Positives = 214/407 (52%), Gaps = 13/407 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q K+E G   + +  +  ++  +  +  T  Q  A +D   DM     M R++ 
Sbjct: 526 LIRLYSQRKQEKGFSYSPDSFMQHELEASFIYEDTPDQLKATQDAKADMESDRPMDRLVC 585

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++   +  ++    V+ ++   
Sbjct: 586 GDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFSERLKDFPCKVDYLSRAR 645

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                 + ++ +A G+ +I++GTH +   S+++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 646 SAKDVSRIVKELADGKINILVGTHKIIGKSVKFKDLGLLIIDEEQKFGVSVKEKLRQMKV 705

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L MTATPIPRTL  + +G  D+S I   P  R PI+T +   N  D + E +   +
Sbjct: 706 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNE-DIITEAINFEM 764

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S   + +++  +I+   E    ++++R           + I HG+M     E ++  F N
Sbjct: 765 SRNGQVFFVNNRIQNLVE--LEAMIKRNIP-----DCRVCIGHGQMEPEKLEKIIFDFVN 817

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
               +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  P 
Sbjct: 818 YDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPL 877

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             L+  +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 878 TSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGF 924


>gi|218460982|ref|ZP_03501073.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
           Kim 5]
          Length = 825

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 132/420 (31%), Positives = 222/420 (52%), Gaps = 30/420 (7%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q++AI  +  D+     M R++ GDVG GKT VAL A   A   G Q  I+ P
Sbjct: 279 PYDETEDQDNAIDAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAIVVP 338

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH++   +  +   + ++  +  +         + +A G+  I++GTHAL    
Sbjct: 339 TTLLARQHFKTFSERFRGLPVRIQQASRLVGAKELALTKKEVAEGKTDIVVGTHALLGAG 398

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT
Sbjct: 399 IKFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLIT 458

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R  ++T I P + +  + E L      G +++++CP++ +               
Sbjct: 459 TPPVDRMAVRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLAD------------LAD 505

Query: 510 LHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +H    S      +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I
Sbjct: 506 VHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLI 565

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK----NSYTRLSVLKNTED---G 617
           +  A+ FGLAQL+QLRGRVGR +       L+  P++K     +  RL VL++ +    G
Sbjct: 566 VHRADMFGLAQLYQLRGRVGRSK--VRAFALFTLPVNKVLTPTADRRLKVLQSLDTLGAG 623

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           F +A  DL  R  G +LG +QSG  K   F + Q  L +++ E+   D  H     P ++
Sbjct: 624 FQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGWSPQIS 683


>gi|307298712|ref|ZP_07578515.1| transcription-repair coupling factor [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915877|gb|EFN46261.1| transcription-repair coupling factor [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 1012

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/396 (33%), Positives = 212/396 (53%), Gaps = 18/396 (4%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G+P+  + ++ +    + P+  T+ Q+ A++++++D+     M R++ GD G GKT VAL
Sbjct: 451 GVPLTGDSEMEKGFRDSFPYVETEDQQKAVEEVMEDLQSTKPMDRLISGDAGYGKTEVAL 510

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A    V +G Q  ++ P  +LA+QHYE  ++      I VEI+        R K L+++
Sbjct: 511 RAAFRTVVSGKQVAVLVPTTVLARQHYENFERRLNPFGIRVEILDRYRTDVQRNKLLKKL 570

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G+  +++GTH+L    + +  L LV+VDE+  FGV Q+    +     +VL M+ATPI
Sbjct: 571 KKGEVDVVVGTHSLLSKEVGFADLGLVVVDEEQLFGVLQKEHFKKLRLQVNVLSMSATPI 630

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWI 488
           PRTL ++  G  D+S I+  PAGR   +  +  IN  D +I     VL E   G +  ++
Sbjct: 631 PRTLYMSLSGLRDLSIISTPPAGRTSPEIYVGQIN--DRLIR--TAVLRETNRGGQTIFV 686

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             ++ E +E     ++ R   L       I + HG+M+    E  +  F  G   +L+ T
Sbjct: 687 HNRVTELQE-----LLSRLRDLLPEV--KIDVAHGQMNKSAFERTIRDFYLGELDMLLCT 739

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTR 607
           T+IE G+DV +A+ +I++++  +GLAQL+QLRGRVGR    +    LY P  LS  S  R
Sbjct: 740 TIIESGVDVPNANTLIVDDSHRYGLAQLYQLRGRVGRSNRRAFSYFLYDPKRLSDPSRER 799

Query: 608 LSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           L  LK       G  IA  DL+ R  G +LG +Q G
Sbjct: 800 LKALKEFSGAGSGMKIAMRDLEIRGFGTLLGAEQHG 835


>gi|253827604|ref|ZP_04870489.1| Transcription-repair-coupling factor [Helicobacter canadensis MIT
           98-5491]
 gi|253511010|gb|EES89669.1| Transcription-repair-coupling factor [Helicobacter canadensis MIT
           98-5491]
          Length = 967

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/380 (35%), Positives = 207/380 (54%), Gaps = 19/380 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  TK Q  AI++I +D+S    M R+L GDVG GKT VA+ AM A   +G QA I+ P 
Sbjct: 457 FVYTKDQNQAIQEIFKDLSSGRVMDRLLSGDVGFGKTEVAMNAMLACFLSGYQAAIITPT 516

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+  IK   +   I V  +   +    ++  LE +  G   +++GTHAL   + 
Sbjct: 517 TLLAYQHFLTIKARFEAFGIKVARLDRYVSAKEKKSILEGLKQGSVDVVVGTHALL--NA 574

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            + KL L++VDE+H+FGV+Q+ K+ + +   H+L M+ATPIPRTL +       +S++ E
Sbjct: 575 VFKKLALIVVDEEHKFGVKQKEKIKEISQNIHLLSMSATPIPRTLNMALSHIKGLSELKE 634

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P+ R P +T +   +     EV+ R    L  G + ++I   I     S+     E   
Sbjct: 635 APSQRLPTRTFVKTYSDSLFKEVVLR---ELRRGGQVFYIHNNI-----SSINQRKEEIL 686

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           S+  H    IAI+H ++S  + E ++  F  G   LL+ T+++E GI + +A+ I+++ +
Sbjct: 687 SIMPHL--KIAILHSQISAQESEDIIMEFAKGGFNLLLCTSIVESGIHLPNANTILVDRS 744

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEE 623
           + FG+A LHQLRGRVGRG +   C  L   P  +++ +  RL  L+       G  +A  
Sbjct: 745 DCFGIADLHQLRGRVGRGSKEGFCYFLIEDPNKITQEAQKRLMALEKNAYLGSGGALAYH 804

Query: 624 DLKQRKEGEILGIKQSGMPK 643
           DL+ R  G +LG  QSG  K
Sbjct: 805 DLEIRGGGNLLGEAQSGHIK 824


>gi|282881355|ref|ZP_06290034.1| transcription-repair coupling factor [Prevotella timonensis CRIS
           5C-B1]
 gi|281304761|gb|EFA96842.1| transcription-repair coupling factor [Prevotella timonensis CRIS
           5C-B1]
          Length = 1164

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 135/405 (33%), Positives = 213/405 (52%), Gaps = 15/405 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L  ++Q +K  G   +V+  + Q++  +  +  T  Q  A  ++  DM +   M R++ G
Sbjct: 571 LYAKRQHEK--GFSFSVDTFMQQELEASFLYEDTPDQVKATAEVKGDMEKARPMDRLVCG 628

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VA+ A   A     Q  ++ P  +LA QHY+  K+  +   + V+ ++    
Sbjct: 629 DVGFGKTEVAIRAAFKAACDSKQVAVLVPTTVLAFQHYKTFKERLRGMPVNVDYLSRART 688

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               R+ LE +A G+  IIIGTH L   S++++ L L+I+DE+ +FGV  + KL +  T 
Sbjct: 689 AKQSRQVLEDLAAGRIDIIIGTHKLLGKSVEWHDLGLLIIDEEQKFGVSTKEKLRKLKTN 748

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              L M+ATPIPRTL  + +G  D+S +   P  R PI T I      + + + +   +S
Sbjct: 749 VDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIHTEIGTFGH-EIITDAINFEMS 807

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
              + Y++  +I    E     V+ ++          +AI HG+M     E+V+  F N 
Sbjct: 808 RNGQVYFVNDRISTLPE--IEKVILKYVP-----DCRVAIGHGQMPPEKLENVLIDFMNH 860

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
              +L++T++IE GID+ +A+ III NA   GL+ LHQ+RGRVGR    + C LL  P  
Sbjct: 861 DYDVLLSTSIIENGIDISNANTIIINNAHRIGLSDLHQMRGRVGRSNRKAFCYLLAPPKS 920

Query: 600 -LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            L+  +  RL  L+   +   GF IA +DL  R  G +LG +QSG
Sbjct: 921 VLTPEARQRLEALETFSELGSGFNIAMQDLDIRGAGNLLGAEQSG 965


>gi|258593268|emb|CBE69607.1| Transcription-repair-coupling factor (TRCF) (ATP-dependent helicase
           mfd) [NC10 bacterium 'Dutch sediment']
          Length = 1152

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 132/380 (34%), Positives = 200/380 (52%), Gaps = 17/380 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             P+  T  Q  AI D+  DM +   M R++ GDVG GKT VA+ A    +  G Q  ++
Sbjct: 591 GFPYEETPDQLQAIADVKADMERDRPMDRLICGDVGYGKTEVAMRAAFKTIIGGKQVAVL 650

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA QH++   +        VE+++    +  + + L  +  G   I+IGTH L Q
Sbjct: 651 VPTTVLALQHFQTFSERFGGFPAKVEMLSRFRSRKEQSEVLRGVGEGVVDIVIGTHRLLQ 710

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L L++VDE+HRFGV  + ++ Q      VL +TATPIPRTL ++ LG  DIS 
Sbjct: 711 KDVRFRDLGLLVVDEEHRFGVAAKERMKQLRRQVDVLTLTATPIPRTLHMSMLGVRDIST 770

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R  IKT    + R D  +  E ++  L  G + +++  ++E     + + V  
Sbjct: 771 IETAPDNRLSIKTT---VARFDPALIKEAIEHELDRGGQVFFVHNRVE-----SIQGVAR 822

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
               L     + +A+ HG + +   E +M  F +GT  +L+ TT+IE G+DV  A+ III
Sbjct: 823 LIKQLVPE--ARLAVAHGELPEERLERIMCDFYDGTFNVLLCTTIIESGLDVSAANTIII 880

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV---LKNTEDGFLI 620
           + A+  GLAQL+QLRGRVGR +  +   LL      LS+ +  RL V   L     GF +
Sbjct: 881 DRADALGLAQLYQLRGRVGRDKHRAYAYLLVPKDAALSETAKKRLQVIAELTELGSGFKV 940

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  G +LG +Q G
Sbjct: 941 AARDLEIRGTGNLLGPEQHG 960


>gi|313203296|ref|YP_004041953.1| transcriptioN-repair coupling factor [Paludibacter propionicigenes
           WB4]
 gi|312442612|gb|ADQ78968.1| transcription-repair coupling factor [Paludibacter propionicigenes
           WB4]
          Length = 1113

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 131/400 (32%), Positives = 210/400 (52%), Gaps = 15/400 (3%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E G   + +  + Q++  +  +  T  Q  +  D+ +DM     M R++ GDVG GKT
Sbjct: 529 KAEQGFQFSPDSYLQQELEASFIYEDTPDQIKSTADVKKDMESTLPMDRLVCGDVGFGKT 588

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   AV    Q  ++ P  +LA QHY   K   ++    +E ++        ++ 
Sbjct: 589 EVAIRAAFKAVTDSKQVAVLVPTTVLALQHYNTFKDRLKDFPCSIEYLSRARTAKQTKEV 648

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L+R+  G   I+IGTH L   S+++  L L+I+DE+ +FGV  + KL +       L MT
Sbjct: 649 LDRLEKGDVDIVIGTHKLVGKSVKFNDLGLLIIDEEQKFGVSVKEKLKEMKVNVDTLTMT 708

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL  + +G  D+S I   P  R P++T +   +  D + E +++ ++   + ++
Sbjct: 709 ATPIPRTLQFSLMGARDLSIINTPPPNRYPVQTEVHVFDE-DVIREAIQLEMNRNGQVFF 767

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +  +I+     N  +++ R           +A+ HG+M     E ++  F +    +L+A
Sbjct: 768 VNNRIQNI--YNIEAMIRRLVP-----GCRVAVGHGQMPADKLEEIIVDFIDYEYDVLVA 820

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS---KNS 604
           TT+IE GID+ +A+ III +A +FGL+ LHQLRGRVGR    + C LL  P LS     +
Sbjct: 821 TTIIESGIDISNANTIIINSAHNFGLSDLHQLRGRVGRSNRKAFCYLL-APELSLLTPEA 879

Query: 605 YTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             RL  L+   +   GF IA +DL  R  G +LG +QSG 
Sbjct: 880 RRRLQALETFAELGSGFNIAMQDLDIRGAGNMLGAEQSGF 919


>gi|323697782|ref|ZP_08109694.1| transcription-repair coupling factor [Desulfovibrio sp. ND132]
 gi|323457714|gb|EGB13579.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
           ND132]
          Length = 1161

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/375 (34%), Positives = 201/375 (53%), Gaps = 13/375 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE A+ D+ +DM +   M R++ GDVG GKT VAL A   A   G Q  ++ P 
Sbjct: 610 FEETPDQEKAVNDVFRDMEKAEPMDRLVCGDVGFGKTEVALRAAFRAALEGRQTALLCPT 669

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QHY+   K  +   + V +++  +    ++  LE  + G+  I+IGTH +    +
Sbjct: 670 TVLAEQHYQTFLKRMEGFPVRVGLLSRFVSAKRQKTVLEAASRGEIDILIGTHRILSKDV 729

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +   L L+I+DE+ RFGV+ + KL        VL +TATPIPRTL L+  G   +S I  
Sbjct: 730 ELPNLGLLILDEEQRFGVKHKEKLKHFRQNIDVLTLTATPIPRTLQLSLSGIRGLSVIET 789

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  RKP++T I+    + E+   L+  L  G + YW+  ++     +    V E    L
Sbjct: 790 PPVDRKPVETGIMEREEL-ELKAVLRRELDRGGQVYWVYNRV-----NGLERVAEFVRGL 843

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + + + HGRMS+   E  M  F +G   +L+ T+++E G+D  +A+ +I++ A+ 
Sbjct: 844 VPD--ARVGMAHGRMSEKGLEEAMRDFWHGELDVLVCTSIVESGLDFPNANTLIVDQAQL 901

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDL 625
           FGL QL+QLRGRVGR E  +    +      +S+    RL ++ + +    GF +A EDL
Sbjct: 902 FGLGQLYQLRGRVGRSERQAYAYFVVPSIKDISEIVRKRLRIILDMDYLGAGFKVAMEDL 961

Query: 626 KQRKEGEILGIKQSG 640
           + R  G ILG  QSG
Sbjct: 962 RLRGAGNILGEAQSG 976


>gi|332285001|ref|YP_004416912.1| transcription-repair coupling factor [Pusillimonas sp. T7-7]
 gi|330428954|gb|AEC20288.1| transcription-repair coupling factor [Pusillimonas sp. T7-7]
          Length = 1158

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 139/386 (36%), Positives = 203/386 (52%), Gaps = 19/386 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q       F  T  Q +AI+ +L DM+    M R++ GDVG GKT VAL A   AV  G 
Sbjct: 606 QAFAEGFGFEETPDQAAAIEAVLGDMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVVNGK 665

Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q  ++ P  +LA+QH + F  ++      +VE+ +          A++ +  GQ  I+IG
Sbjct: 666 QVALLCPTTLLAEQHAQTFADRFADWPVKVVEL-SRFRSTKEVAAAIKGLNDGQVDIVIG 724

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH +    +++ +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G
Sbjct: 725 THKILSKDVKFKQLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMSLEG 784

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D S I   P  R  IKT    + R D   + E L   L  G + Y++  +++     N
Sbjct: 785 IRDFSVIATAPQKRLAIKTF---VRREDSGTIREALLRELKRGGQVYFLHNEVDTIH--N 839

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R+ +E          + IA+ HG+M + + E VM  F      +L+ TT+IE GIDV  
Sbjct: 840 RRARLEELVP-----EARIAVAHGQMPERELEEVMKGFYQQRYNVLLCTTIIETGIDVPT 894

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED- 616
           A+ I+I  A+  GLAQLHQLRGRVGR    +   L+      ++ N+  RL  ++  E+ 
Sbjct: 895 ANTIVIHRADRLGLAQLHQLRGRVGRSHHQAYAYLMTPGEDAMTSNAKKRLEAIQAMEEL 954

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A  DL+ R  GE+LG  QSG
Sbjct: 955 GAGFFLAMHDLEIRGTGEVLGESQSG 980


>gi|218885389|ref|YP_002434710.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218756343|gb|ACL07242.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1197

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/391 (32%), Positives = 213/391 (54%), Gaps = 21/391 (5%)

Query: 259  GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
            G++ ++   +  F  T  Q  AI+D+L DM +   M R++ GDVG GKT VAL A   A 
Sbjct: 626  GELYREFEASFGFEETPDQARAIQDVLDDMEKPEPMDRLVCGDVGFGKTEVALRAAFRAA 685

Query: 319  EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
              G Q  ++ P  +LA+QHY+  +       + V +++  + +  +++ L+  A GQ  I
Sbjct: 686  AEGRQVALLCPTTVLAEQHYQTFRSRLAGFPVNVGMLSRFVSRQKQKEVLQAAARGQIDI 745

Query: 379  IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            +IGTH L  D +Q   L L+++DE+ RFGV+ + KL +       L +TATPIPRTL L+
Sbjct: 746  LIGTHRLLSDDVQLPNLGLLVLDEEQRFGVRHKEKLKKFRKNVDALTLTATPIPRTLQLS 805

Query: 439  SLGDIDISKITEKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE--E 494
              G  ++S I   P  RKP+ T +I    N + +++ER   +  EG + +W+  +++  E
Sbjct: 806  MSGIRELSVIETAPPERKPVATALIERDQNALRQILER--EIAREG-QVFWVHNRVQGLE 862

Query: 495  KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            +     R +V          T+ + + HG+M + + E  M  F +G   +L+ T ++E G
Sbjct: 863  RVAEFVRGLVP---------TARVGMAHGQMGERELEDTMHKFWHGELDVLVCTAIVESG 913

Query: 555  IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK 612
            +D   A+ +I++ A+ FGL QL+QLRGRVGR +  +  + +      L + +  R+ ++ 
Sbjct: 914  LDFPRANTLIVDQAQMFGLGQLYQLRGRVGRSDRQAYAVFVVSDAERLPEQARQRMRIIL 973

Query: 613  NTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
              +    GF +A EDL+ R  G ILG  QSG
Sbjct: 974  ELDYLGAGFQVAMEDLRLRGAGNILGEVQSG 1004


>gi|74317674|ref|YP_315414.1| transcription-repair coupling factor [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057169|gb|AAZ97609.1| transcription-repair coupling factor [Thiobacillus denitrificans
           ATCC 25259]
          Length = 1146

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 204/378 (53%), Gaps = 19/378 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q +AI  ++ DM     M R++ GDVG GKT VAL A   AV  G Q  ++ P 
Sbjct: 588 YEETPDQAAAIAAVMADMQSGKPMDRLVCGDVGFGKTEVALRAAFMAVMGGYQVAVLVPT 647

Query: 331 GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
            +LA+QH+  F  +++Q    + E+      +  +  ALE +  G+  I+IGTH L Q  
Sbjct: 648 TLLAEQHFNNFSDRFSQWPVKLAELSRFRTAK-EQAAALEALKDGRIDIVIGTHRLIQKD 706

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++ +L LVI+DE+HRFGV+Q+ +L        VL +TATPIPRTL ++  G  D S I 
Sbjct: 707 VKFARLGLVILDEEHRFGVRQKEQLKALRAEVDVLTLTATPIPRTLAMSLEGIRDFSVIA 766

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  +KT +   +   I E + R    L  G + Y++  ++     S  +++ ER 
Sbjct: 767 TAPQKRLAVKTFVRSFSGGLIREAVLR---ELKRGGQVYFLHNEV-----STIQNMRERL 818

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L     + I + HG+MS+ + E VM  F      +L+ TT+IE GID+  A+ I+I  
Sbjct: 819 EKLLPE--ARIRVGHGQMSERELEQVMRDFYQQRYDILLCTTIIETGIDIPTANTILINR 876

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYH-----PPLSKNSYTRLSVLKNTEDGFLIAE 622
           A+ FGLAQLHQLRGRVGR    +   LL        P +K     + +++    GF +A 
Sbjct: 877 ADKFGLAQLHQLRGRVGRSHHQAFAYLLVEEDRTLTPQAKKRLEAIQLMEELGSGFHLAR 936

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  GE+LG KQSG
Sbjct: 937 HDLEIRGAGEVLGEKQSG 954


>gi|315607772|ref|ZP_07882765.1| transcription-repair coupling factor [Prevotella buccae ATCC 33574]
 gi|315250241|gb|EFU30237.1| transcription-repair coupling factor [Prevotella buccae ATCC 33574]
          Length = 1155

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/400 (32%), Positives = 208/400 (52%), Gaps = 15/400 (3%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++E G   + +  +  ++  +  +  T  Q  A +D+  DM     M R++ GDVG GKT
Sbjct: 569 RREKGFAYSADSYLQHELEASFLYEDTPDQNKATQDVKSDMESGRPMDRLVCGDVGFGKT 628

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A     Q  ++ P  +LA QHY+      +   + VE ++        ++ 
Sbjct: 629 EVAIRAAFKAACDSKQVAVLVPTTVLAFQHYQTFNSRLKGLPVRVEYLSRARSAKETKQV 688

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  +A G+  I+IGTH L   +++++ L L+I+DE+ +FGV  + KL +       L M+
Sbjct: 689 LADLAEGKIDILIGTHKLIGKAVKWHDLGLLIIDEEQKFGVSTKEKLRKLKVNVDTLTMS 748

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486
           ATPIPRTL  + +G  D+S I   P  R PI T +       EVI + +   +S   + Y
Sbjct: 749 ATPIPRTLQFSLMGARDMSIIRTPPPNRYPIHTELASYGH--EVIADAINFEMSRNGQVY 806

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           ++  +I    E    ++++++          IAI HG+M   + E ++  F N    +L+
Sbjct: 807 FVNDRISNLPE--IAALIKKYVP-----DCRIAIGHGQMKPEELEQIIMGFMNYDYDVLL 859

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNS 604
           +TT++E GID+ +A+ III +A  FGL+ LHQ+RGRVGR    + C LL  P   L+  +
Sbjct: 860 STTIVENGIDISNANTIIINDAHRFGLSDLHQMRGRVGRSNRKAFCYLLAPPKSVLTPEA 919

Query: 605 YTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGM 641
             RL  L+N      GF +A +DL  R  G +LG +QSG 
Sbjct: 920 RRRLEALENFSGLGSGFNLAMQDLDIRGAGNLLGAEQSGF 959


>gi|90419666|ref|ZP_01227576.1| transcription-repair coupling factor [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336603|gb|EAS50344.1| transcription-repair coupling factor [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 1121

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 134/405 (33%), Positives = 222/405 (54%), Gaps = 32/405 (7%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q +AI  +  D++    M R++ GDVG GKT VAL +       G Q  ++ P
Sbjct: 568 PYEETEDQLNAIDAVADDLAAGRPMDRLICGDVGFGKTEVALRSAFIGAMNGLQVAVVVP 627

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER-------IAHGQAHIIIGT 382
             +LA+QHY+   +  +   +       N+ QA R  A +        IA G   I++GT
Sbjct: 628 TTLLARQHYKTFSERFRGLPL-------NVAQASRLVASKELTQTKKGIADGTVDIVVGT 680

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           HAL   ++ +  L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G 
Sbjct: 681 HALLGKAVDFKNLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGV 740

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
            ++S IT  P  R  ++T + P + +  V E L      G +++++CP++     S+   
Sbjct: 741 RELSLITTAPVDRMAVRTFVSPFDPL-VVRETLLRERYRGGQSFYVCPRV-----SDLAD 794

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           V    ++  E     +A+ HG+M+  + + +M++F  G   +L++TT++E G+D+  A+ 
Sbjct: 795 VKAFLDA--EVPELKVAVAHGQMAATELDDIMNAFYEGQYDVLLSTTIVESGLDIPSANT 852

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED--- 616
           +I+  A+ FGL+QL+QLRGRVGR  ++ +  LL  P     +K +  RL VL++ +    
Sbjct: 853 MIVHRADMFGLSQLYQLRGRVGR-SKVRAYALLTIPANKTPTKGADRRLKVLQSLDTLGA 911

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEI 658
           GF +A  DL QR  G ILG +QSG  K   F + Q  L +++ E+
Sbjct: 912 GFQLASHDLDQRGAGNILGDEQSGHVKEVGFELYQQMLEEAVAEM 956


>gi|307638232|gb|ADN80682.1| Transcription-repair coupling factor [Helicobacter pylori 908]
          Length = 906

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/401 (33%), Positives = 216/401 (53%), Gaps = 26/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISRDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N  + V  +   +  + + K L+ +  GQ   +IGTHA+     
Sbjct: 543 TLLAHQHFETLRARFENFGVKVARLDRYIKTSEKNKLLKAVELGQVDALIGTHAIL--GA 600

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 601 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKT 660

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 661 PPTDRKPSRTFLKEKNDELLKEIIHR---ELRRNGQIFYIHNHIASISKVKTKLEELIPK 717

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 718 L---------KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 768

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 769 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKNLNEQALKRLLALEKNSYLGSGESIA 828

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 829 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 869


>gi|209549326|ref|YP_002281243.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209535082|gb|ACI55017.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 1167

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 131/419 (31%), Positives = 222/419 (52%), Gaps = 28/419 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q++AI  +  D+     M R++ GDVG GKT VAL A   A   G Q  I+ P
Sbjct: 621  PYDETEDQDNAIDAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAIVVP 680

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L++QH++   +  +   + ++  +  +         + +A G+  I++GTHAL    
Sbjct: 681  TTLLSRQHFKTFSERFRGLPVRIQQASRLVGAKELALTKKEVAEGKTDIVVGTHALLGAG 740

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I++  L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT
Sbjct: 741  IKFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLIT 800

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R  ++T I P + +  + E L      G +++++CP++ +               
Sbjct: 801  TPPVDRMAVRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLAD------------LAD 847

Query: 510  LHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +H    S      +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I
Sbjct: 848  VHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLI 907

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTED---GF 618
            +  A+ FGLAQL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF
Sbjct: 908  VHRADMFGLAQLYQLRGRVGR-SKVRAFALFTLPVNKVLTATADRRLKVLQSLDTLGAGF 966

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
             +A  DL  R  G +LG +QSG  K   F + Q  L +++ E+   D  H     P ++
Sbjct: 967  QLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGWSPQIS 1025


>gi|121605445|ref|YP_982774.1| transcription-repair coupling factor [Polaromonas naphthalenivorans
           CJ2]
 gi|120594414|gb|ABM37853.1| transcription-repair coupling factor [Polaromonas naphthalenivorans
           CJ2]
          Length = 1161

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 135/381 (35%), Positives = 200/381 (52%), Gaps = 19/381 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           +  F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   A+  G Q  ++
Sbjct: 606 DFGFDETPDQSAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFIAITGGKQVALL 665

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  +LA+QHY+ +        + V  ++          A++ +A G   I++GTH L  
Sbjct: 666 APTTLLAEQHYQTLVDRFAKWPVRVAEMSRFRSAKEITAAIKGLADGSVDIVVGTHKLLS 725

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           ++ ++  L L+I+DE+HRFGV+ +  +        VL +TATPIPRTL +   G  D+S 
Sbjct: 726 ETTKFKDLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSV 785

Query: 448 ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           I   P  R  IKT +       I E + R    L  G + Y++  ++E        ++  
Sbjct: 786 IATAPQRRLAIKTFVRTEGNGVIREAVLR---ELKRGGQVYFLHNEVE--------TIEN 834

Query: 506 RFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           R   L E    + IAI HG+M + + E VM  F      +L+ +T+IE GIDV  A+ I+
Sbjct: 835 RRQKLEELLPEARIAIAHGQMPERELERVMKDFVAQRFNVLLCSTIIETGIDVPSANTIL 894

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619
           +  A+ FGLAQLHQLRGRVGR    +   L+      L+K +  RL  ++  E+   GF 
Sbjct: 895 MSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDLEGLTKQASQRLDAIQQMEELGSGFY 954

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  GE+LG  QSG
Sbjct: 955 LAMHDLEIRGTGEVLGENQSG 975


>gi|27379778|ref|NP_771307.1| transcription-repair coupling factor [Bradyrhizobium japonicum USDA
           110]
 gi|27352931|dbj|BAC49932.1| bll4667 [Bradyrhizobium japonicum USDA 110]
          Length = 1093

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 151/446 (33%), Positives = 231/446 (51%), Gaps = 32/446 (7%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G   +K +   P+  T  Q  AI+D+L+D++  + M R++ GDVG GKT VAL A AA V
Sbjct: 556 GSAYEKFVARFPYFTTVDQAKAIRDVLEDLASGHPMDRVICGDVGFGKTEVALRAAAAVV 615

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            +G Q  I  P  +LA+QH    +K      I V  ++     A  R   E +  G+  +
Sbjct: 616 LSGKQVAIAVPTTVLARQHVATFQKRFAPFDIEVGNLSRATSGAELRATREGLRSGRIKV 675

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           ++GT AL    +++  L LVI+DE+  FG  ++ +L+  A   HVL+M+ATPIPRTL   
Sbjct: 676 VVGTQALGGKDVKFDDLGLVIIDEEQHFGAAEKARLSSLAKNVHVLMMSATPIPRTLAAG 735

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEK 495
             G  D+S I   P  R P+ T I P++  D  I     +L E ++   ++ ICP+I+  
Sbjct: 736 LAGFRDLSVIASPPVHRLPVATRIAPLS--DAAIA--SALLREQRRHGQSFLICPRIQ-- 789

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              +   ++ R  ++       I  +HGR++  + +  M SF  G   +L+AT ++E G+
Sbjct: 790 ---DLDPMLARVQAVAGDL--RIVCLHGRLAADEIDDRMMSFVEGRADVLLATNIVESGL 844

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+  A+ I++   E FGLAQLHQLRGRVGR   I +   L     S  S  RL+VL+   
Sbjct: 845 DIPRANTIVVCWPEKFGLAQLHQLRGRVGR-SGIRAFAHLLTETNSGQSEKRLAVLEEFS 903

Query: 616 ---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK--DAKHILTQD 670
               GF I+E DL  R  G++   +QSG  +  +  P L+  LL++A +  D +      
Sbjct: 904 RPGAGFAISERDLDLRGAGDLFSEQQSGHVQ--VFGPVLYSHLLKMASEKVDEERAAVWV 961

Query: 671 PDL----------TSVRGQSIRILLY 686
           PDL          T V  + +R+ LY
Sbjct: 962 PDLNLPVADMLPETYVHSEPVRLELY 987


>gi|227538907|ref|ZP_03968956.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241416|gb|EEI91431.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 1112

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 202/377 (53%), Gaps = 15/377 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  QE A  D+ +DM   + M R++ GDVG GKT VA+ A   AV    Q  ++ P 
Sbjct: 558 YEDTPDQEKATADVKRDMESPHPMDRLICGDVGFGKTEVAIRAAFKAVADSKQVAVLVPT 617

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QHY    +  +     ++ +         ++ L ++  G+  I+IGTH L    +
Sbjct: 618 TILALQHYRTFTERLKGLPCNIDYVNRFKTTKQIKETLAKLTEGKIDILIGTHRLVSKDV 677

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+I+DE+ +FGV  + KL         L +TATPIPRTL  + +G  D+S I+ 
Sbjct: 678 KFKDLGLMIIDEEQKFGVSVKEKLKVMRANVDSLTLTATPIPRTLHFSLMGARDLSIIST 737

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R+P++T +   N    + E +   L  G + ++I  ++ + K+    +++++    
Sbjct: 738 PPPNRQPVQTELHVFNET-LIQEAVSYELDRGGQVFFIHNRVADLKQ--LGALIQKLVP- 793

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + + + HG++   D E VM  F +    +L+ATT+IE G+D+ +A+ I+I +A  
Sbjct: 794 ----GARVGVAHGQLEGDDLEDVMLKFISHEFDVLVATTIIEAGLDIPNANTIMINHAHM 849

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLS---KNSYTRLSVLKNTED---GFLIAEED 624
           FGL+ LHQ+RGRVGR  + + C LL  PPLS     +Y RLS ++   +   GF +A  D
Sbjct: 850 FGLSDLHQMRGRVGRSNKKAFCYLL-SPPLSTLTSEAYKRLSAIEEFSELGSGFNVAMRD 908

Query: 625 LKQRKEGEILGIKQSGM 641
           L  R  G +LG +QSG 
Sbjct: 909 LDIRGSGNLLGAEQSGF 925


>gi|319783816|ref|YP_004143292.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169704|gb|ADV13242.1| transcription-repair coupling factor [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
          Length = 1165

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 145/452 (32%), Positives = 236/452 (52%), Gaps = 42/452 (9%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +AGQ+  +   +Q +    + +  EG   +   R  P+  T  Q++AI  +  D++    
Sbjct: 582  MAGQLIRIAAERQMRSAPPL-VPAEGLYGEFAAR-FPYEETDDQQTAIDSVRDDLAAGKP 639

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV- 352
            M R++ GDVG GKT VAL A   A   G Q  ++ P  +L++QH++   +      I V 
Sbjct: 640  MDRLICGDVGFGKTEVALRAAFIAAMEGFQVAVVVPTTLLSRQHFKTFSQRFSGLPIRVA 699

Query: 353  --EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
                + G    A  +K    IA GQ  I+IGTHAL   +I +  L L+I+DE+  FGV+ 
Sbjct: 700  QASRLVGAKELAETKKG---IAEGQVDIVIGTHALLGSAISFKNLGLLIIDEEQHFGVKH 756

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--I 468
            + +L    T  HVL ++ATPIPRTL L   G  ++S I   P  R  ++T I P +   I
Sbjct: 757  KERLKDLKTDVHVLTLSATPIPRTLQLALTGVRELSLIATPPVDRMAVRTFISPFDPLVI 816

Query: 469  DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-----IAIIHG 523
             E + R +     G  ++++ P+I +  E            +H+    S     +A+ HG
Sbjct: 817  RETLLRERY---RGGHSFYVVPRISDLSE------------IHDFLKESVPELKVAVAHG 861

Query: 524  RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +M   + + +M++F +G   +L++TT++E G+D+  A+ +II  A+ FGL+QL+QLRGRV
Sbjct: 862  QMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTLIIHRADMFGLSQLYQLRGRV 921

Query: 584  GRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIK 637
            GR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  R  G +LG +
Sbjct: 922  GR-SKVRAYALFTLPANRKLTDTAERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEE 980

Query: 638  QSGMPK---FLIAQPELHDSLLEIARKDAKHI 666
            QSG  K   F + Q  L +++ E+  KD+  +
Sbjct: 981  QSGHIKEVGFELYQQMLEEAVAEV--KDSGEV 1010


>gi|300770435|ref|ZP_07080314.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762911|gb|EFK59728.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 1112

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 202/377 (53%), Gaps = 15/377 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  QE A  D+ +DM   + M R++ GDVG GKT VA+ A   AV    Q  ++ P 
Sbjct: 558 YEDTPDQEKATADVKRDMESPHPMDRLICGDVGFGKTEVAIRAAFKAVADSKQVAVLVPT 617

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QHY    +  +     ++ +         ++ L ++  G+  I+IGTH L    +
Sbjct: 618 TILALQHYRTFTERLKGLPCNIDYVNRFKTTKQIKETLAKLTEGKIDILIGTHRLVSKDV 677

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+I+DE+ +FGV  + KL         L +TATPIPRTL  + +G  D+S I+ 
Sbjct: 678 KFKDLGLMIIDEEQKFGVSVKEKLKVMRANVDSLTLTATPIPRTLHFSLMGARDLSIIST 737

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R+P++T +   N    + E +   L  G + ++I  ++ + K+    +++++    
Sbjct: 738 PPPNRQPVQTELHVFNET-LIQEAVSYELDRGGQVFFIHNRVADLKQ--LGALIQKLVP- 793

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + + + HG++   D E VM  F +    +L+ATT+IE G+D+ +A+ I+I +A  
Sbjct: 794 ----GARVGVAHGQLEGDDLEDVMLKFISHEFDVLVATTIIEAGLDIPNANTIMINHAHM 849

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLS---KNSYTRLSVLKNTED---GFLIAEED 624
           FGL+ LHQ+RGRVGR  + + C LL  PPLS     +Y RLS ++   +   GF +A  D
Sbjct: 850 FGLSDLHQMRGRVGRSNKKAFCYLL-SPPLSTLTSEAYKRLSAIEEFSELGSGFNVAMRD 908

Query: 625 LKQRKEGEILGIKQSGM 641
           L  R  G +LG +QSG 
Sbjct: 909 LDIRGSGNLLGAEQSGF 925


>gi|85717289|ref|ZP_01048243.1| transcription-repair coupling factor [Nitrobacter sp. Nb-311A]
 gi|85695878|gb|EAQ33782.1| transcription-repair coupling factor [Nitrobacter sp. Nb-311A]
          Length = 1174

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 144/448 (32%), Positives = 238/448 (53%), Gaps = 25/448 (5%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +AG++  +   +  +    +P  V+  +  +     P+  T+ Q SAI+  L+D+     
Sbjct: 588  IAGELIRIAAERHLRDAPKLP--VQSGLYDEFCARFPYEETEDQLSAIQASLEDLESGKP 645

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA+QH +   +  +   + V 
Sbjct: 646  MDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTFTERFRGFPVNVA 705

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
              +  +      K  + +A G   I++GTHAL   SI++  L L++VDE+  FGV  + +
Sbjct: 706  QASRLVSTKELTKVKKGMADGSVDIVVGTHALLGKSIKFRDLGLLVVDEEQHFGVSHKER 765

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEV 471
            L Q     HVL ++ATPIPRTL L   G  D+S I   P  R  ++T + P +   I E 
Sbjct: 766  LKQLRAHVHVLTLSATPIPRTLQLALTGVRDLSIIASPPVDRLAVRTFVAPHDPLMIREA 825

Query: 472  IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
            + R +     G +A+++ P++ +  E      V+ F  L +H     +A+ HG+M     
Sbjct: 826  LLRERY---RGGQAFYVVPRVSDLAE------VKDF--LDKHVPEMKVAVAHGQMPPTVI 874

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E ++ +F +G   +L++TT++E G+D+  A+ +I+  ++ FGLAQL+QLRGRVGR  ++ 
Sbjct: 875  EDIISAFYDGKYDVLLSTTIVESGLDIPTANTLIVHRSDMFGLAQLYQLRGRVGR-SKLR 933

Query: 591  SCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKF 644
            +  L   P    ++  +  RL VL++ E    GF +A  DL  R  G +LG +QSG  K 
Sbjct: 934  AYALFTLPSTHKITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKE 993

Query: 645  LIAQPELHDSLLEIARKDAKHILTQDPD 672
            +    EL+ S+LE A ++ K  +T+  D
Sbjct: 994  V--GFELYQSMLEEAIENLKTGVTELAD 1019


>gi|218529447|ref|YP_002420263.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218521750|gb|ACK82335.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 1111

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 152/453 (33%), Positives = 242/453 (53%), Gaps = 16/453 (3%)

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIK 282
           AR RL  +  LA     +L   Q ++E   P I    +  ++      +  T  Q  A++
Sbjct: 526 ARRRLEAEATLAKAARAMLKAAQERREAHAPQIVPPEREMERFAAGFGYPLTGDQAGAVE 585

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           + L D++++  M R++ GDVG GKT VAL A AAA+ AG Q  +MAP  +L +QH E  +
Sbjct: 586 ETLADLAREMPMDRLVCGDVGFGKTEVALRAAAAAIFAGRQIAVMAPTTVLVRQHVETFR 645

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +      I V  ++  +  A  ++  + +A G   +++GT AL    + ++ L L I+DE
Sbjct: 646 RRFARFGIEVAHLSRLVSPAEAKRVKQGLADGSVRLVVGTQALAGRGVSFHDLGLAIIDE 705

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + RFG + +  L + A   H+L ++ATPIPRTL    +G   +S I   PA R+PI+TVI
Sbjct: 706 EQRFGAKTKASLRKAAGDAHILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQPIRTVI 765

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
            P      +   L+     G +++ +CP+IE     +   + +R ++L       +   H
Sbjct: 766 APFEE-STLAAALRREHRRGGQSFVVCPRIE-----DIAPMAKRLHALVPGL--DVVTAH 817

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G M   + +  M  F +G   +L+AT++IE G+DV  A+ +++ +AE FGLAQLHQLRGR
Sbjct: 818 GEMKPAEMDDAMVRFADGNGDVLLATSIIESGLDVPRANTMLVWDAERFGLAQLHQLRGR 877

Query: 583 VGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIK 637
           VGRG+      L  HP  PLS ++  RL  L+  +    GF I+  DL  R  G+++G  
Sbjct: 878 VGRGQRRGVVYLFGHPDKPLSPSTEKRLRTLEALDRLGAGFAISARDLDLRGAGDLVGDD 937

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           QSG  K +     L+  LL++A + AK  + +D
Sbjct: 938 QSGHVKLVGLG--LYQHLLQLALRAAKGEVAED 968


>gi|297183227|gb|ADI19367.1| transcription-repair coupling factor (superfamily II helicase)
           [uncultured Chloroflexi bacterium HF0500_03M05]
          Length = 1192

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 143/415 (34%), Positives = 230/415 (55%), Gaps = 21/415 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A ++  L   ++F + +  P +   +I  ++  + P+  T+ Q++AI +I  DM Q   
Sbjct: 584 MASELLSLYATREFAEGVAFPSDTPWQI--ELEDSFPYEETRDQQTAIAEIKTDMEQSRP 641

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT +AL A   AV AG Q  ++ P  +LAQQHY    +      + +E
Sbjct: 642 MDRLVCGDVGYGKTEIALRAAFKAVMAGKQVAVLVPTTVLAQQHYVTFSQRLSAYPVKIE 701

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            ++    +  +R+ +E + +G+  I IGTH L Q  +++  L LVIVDE+ RFGV  + +
Sbjct: 702 ALSRFRTEQEQRQIVEDLTNGKVDICIGTHRLVQKDVKFKDLGLVIVDEEQRFGVVHKER 761

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI- 472
           L Q      VL MTATPIPRTL L+  G  D+S I   P  R PIKT +   +  DE++ 
Sbjct: 762 LKQIRHEVEVLTMTATPIPRTLHLSLAGIRDMSTIDTPPEERLPIKTYVSEFS--DELVR 819

Query: 473 ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           E ++  +    + +++  ++   +   +  R++V           + + I HG+M +   
Sbjct: 820 EAIRREIDRQGQVFFLHNRVRNIDYMANYIRAMVPE---------AEVGIAHGQMPEDQL 870

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E  M  F +G   +L+ TT+IE G+D+ + + +II  ++ FGLAQL+QLRGR+GRG   +
Sbjct: 871 ERSMIDFADGKTDVLVCTTIIESGLDIPNVNTLIINRSDTFGLAQLYQLRGRIGRGVRRA 930

Query: 591 SCILLYHP--PLSKNSYTRL-SVLKNTE--DGFLIAEEDLKQRKEGEILGIKQSG 640
              L+  P   L++ +  RL ++L  TE   GF IA +DL+ R  G ILG +QSG
Sbjct: 931 YAYLMIPPSSSLTELAEKRLKTMLAATELGAGFRIAMKDLEIRGAGNILGAQQSG 985


>gi|222085973|ref|YP_002544505.1| transcription-repair coupling factor [Agrobacterium radiobacter K84]
 gi|221723421|gb|ACM26577.1| transcription-repair coupling factor [Agrobacterium radiobacter K84]
          Length = 1166

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/407 (31%), Positives = 217/407 (53%), Gaps = 28/407 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q +AI+ +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P
Sbjct: 620  PYDETEDQMNAIEAVRDDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGAQVAVVVP 679

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QH++      +   I ++  +  +         + ++ G+  I++GTHAL    
Sbjct: 680  TTLLARQHFKTFTDRFRGLPIRIQQASRLVGAKDLALTKKEVSEGKTDIVVGTHALLGAG 739

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            IQ+  L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT
Sbjct: 740  IQFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLIT 799

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R  ++T I P + +  + E L      G +++++CP++ +               
Sbjct: 800  TPPVDRMAVRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLAD------------LAD 846

Query: 510  LHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +H    S      +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I
Sbjct: 847  IHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLI 906

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTED---GF 618
            +  A+ FGLAQL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF
Sbjct: 907  VHRADMFGLAQLYQLRGRVGR-SKVRAFALFTLPVNKVLTTTAERRLKVLQSLDTLGAGF 965

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKD 662
             +A  DL  R  G +LG +QSG  K   F + Q  L +++ E+   D
Sbjct: 966  QLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVD 1012


>gi|312890454|ref|ZP_07749991.1| transcription-repair coupling factor [Mucilaginibacter paludis DSM
           18603]
 gi|311297224|gb|EFQ74356.1| transcription-repair coupling factor [Mucilaginibacter paludis DSM
           18603]
          Length = 1119

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 200/380 (52%), Gaps = 21/380 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  QE A  D  +DM   + M R++ GDVG GKT +A+ A   AV    Q  ++ P 
Sbjct: 559 YEDTPDQEKATVDFKRDMESPHPMDRLICGDVGFGKTEIAIRAAFKAVADSKQVAVLVPT 618

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QHY+      +     ++ +         +  L+R+A G+  IIIGTH L    +
Sbjct: 619 TILAAQHYKTFTDRLKGFPCNIDYVNRFKTSKQIKDTLQRLAEGKLDIIIGTHRLVSKDV 678

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+I+DE+ +FGV  + KL         L +TATPIPRTL  + +G  D+S I+ 
Sbjct: 679 KFKDLGLMIIDEEQKFGVSTKEKLKAMRVNVDTLTLTATPIPRTLHFSLMGARDLSIIST 738

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKE--SNFRSVVERF 507
            P  R+P+ T +   N  D++I E ++  +    + ++I  ++ +  +     + +V + 
Sbjct: 739 PPPNRQPVVTELHVFN--DKLIKEAVEYEIDRNGQVFFIHNRVADLPQLGGMIKKLVPK- 795

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + I I HG++   D E VM  F +    +L+ATT+IE G+D+ +A+ III  
Sbjct: 796 --------ARIGIAHGQLEGDDLEDVMLKFVSNEYDVLVATTIIEAGLDIPNANTIIINY 847

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS---KNSYTRLSVLKNTED---GFLIA 621
           A  FGL+ LHQ+RGRVGR  + + C LL  PPLS     +  RLS ++   D   GF +A
Sbjct: 848 AHMFGLSDLHQMRGRVGRSNKKAFCYLL-SPPLSTLTSEARKRLSAIEEFSDLGSGFNVA 906

Query: 622 EEDLKQRKEGEILGIKQSGM 641
             DL  R  G +LG +QSG 
Sbjct: 907 MRDLDIRGSGNLLGAEQSGF 926


>gi|68171223|ref|ZP_00544627.1| Transcription-repair coupling factor [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658189|ref|YP_507071.1| transcription-repair coupling factor [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67999343|gb|EAM85988.1| Transcription-repair coupling factor [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88599646|gb|ABD45115.1| transcription-repair coupling factor [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 1134

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/393 (32%), Positives = 216/393 (54%), Gaps = 18/393 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           ++ T+ Q  AIKD+  D+S    M R++ GDVG GKT +AL A         Q  I+ P 
Sbjct: 592 YTETEDQLQAIKDMEHDLSSGKIMNRLICGDVGFGKTEIALRAAFLVASQNYQVAIIVPT 651

Query: 331 GILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
            +L +QH+  F +++ +   I ++ ++  + ++  +K  E ++ GQ HIIIGTHA+    
Sbjct: 652 TLLCRQHFIVFTERFKKFPNIKIKQLSKIVARSEIKKTKESLSCGQVHIIIGTHAILAQD 711

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+I+DE+ +FGV+Q+  L +  T  HV+ ++ATPIPRTL ++  G  D+S I 
Sbjct: 712 VTFANLSLLIIDEEQQFGVKQKELLKKIKTNVHVISLSATPIPRTLYMSLCGIKDLSLIK 771

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  + T         I + I R     + G + +++CPQI     SN +S+ ++ 
Sbjct: 772 TPPKNRLAVTTYTTYYEETIIKDAIIREH---NRGGRVFYVCPQI-----SNIKSISDKI 823

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L      + A  HG++S    +++M+ F +G   +L+ T++IE G+D+  A+ III N
Sbjct: 824 RKLVPEIKMNTA--HGQLSPTQLDTIMNDFFDGKFTILLTTSIIECGLDIPFANTIIIHN 881

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEED 624
           A+ FGLAQL+QL+GRVGR         +     +  S  +L ++++ +    GF ++  D
Sbjct: 882 ADMFGLAQLYQLKGRVGRSSTKGFAYFILSEKATNKSAIKLEIIQSIDSINSGFNLSLHD 941

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +  R  G ++G +QSG  K +    EL+  +LE
Sbjct: 942 MDIRGFGNLVGEEQSGNIKDI--GIELYQQMLE 972


>gi|157736671|ref|YP_001489354.1| transcription-repair coupling factor [Arcobacter butzleri RM4018]
 gi|157698525|gb|ABV66685.1| transcription-repair coupling factor [Arcobacter butzleri RM4018]
          Length = 995

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/398 (33%), Positives = 214/398 (53%), Gaps = 23/398 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           GI IN + K+ +   ++  F  TK Q+ +IK+IL D+S    M R+L GDVG GKT VA+
Sbjct: 465 GIKINTDKKVLEDFQKSAGFEYTKDQKRSIKEILDDLSSGRVMDRLLSGDVGFGKTEVAM 524

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A+ A +  G Q + + P  +LA QHY  I+K  ++  I V  + G      +    + +
Sbjct: 525 NALLAVILDGYQTIFVCPTTLLATQHYHSIQKRLESFGIRVAKLDGKTTAKEKTSIKKGL 584

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +    ++IGTH+L    I+   L LVI+DE+H+FGV+Q+ KL Q     H+  M+ATPI
Sbjct: 585 ENADIKLVIGTHSLL--DIKTSNLALVIIDEEHKFGVKQKEKLKQLREDVHIFSMSATPI 642

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489
           PRTL L       +S +   P+ R  ++T +   +   I E+I R K     G + +++ 
Sbjct: 643 PRTLNLALSKLKGMSSLLTPPSERLGVRTYVKEYSEKLIKEIILREK---RRGGQLFYVH 699

Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             I   E K+ +  ++V             I IIH ++     E ++++F+N    +L+A
Sbjct: 700 NNIASIEAKKKDIEAIVPNI---------KIDIIHSQIKPEQAEKIIEAFENKEFDILLA 750

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSY 605
           T+++E GI + +A+ III+ A+ FG+A LHQLRGRVGR  +   C  +      ++ ++ 
Sbjct: 751 TSIVESGIHLPNANSIIIDGADRFGIADLHQLRGRVGRSNKEGYCYYVVEDKKSITDDAV 810

Query: 606 TRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
            RL  L++      G  +A +DL+ R  G I+G  QSG
Sbjct: 811 KRLVALESNSYLGSGTALAHQDLEIRGGGNIIGEAQSG 848


>gi|312138702|ref|YP_004006038.1| transcription repair coupling factor mfd [Rhodococcus equi 103S]
 gi|311888041|emb|CBH47353.1| transcription repair coupling factor Mfd [Rhodococcus equi 103S]
          Length = 1228

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 199/375 (53%), Gaps = 13/375 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q + I ++  DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P 
Sbjct: 656  FTETHDQLTVIDEVKADMEKPVPMDRVVIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPT 715

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LAQQH +   +   N  + V  ++     A  ++ + ++A G+  I++GTH L Q  +
Sbjct: 716  TLLAQQHLQTFSERMANFPVKVRGLSRFTDAAESKEIIAQLADGEVDIVVGTHRLLQTGV 775

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 776  RWKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILT 835

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R PI T +             + +L +G+  Y         + S+     +R   +
Sbjct: 836  PPEERHPILTYVGAYADKQVAAAIRRELLRDGQVFYV------HNRVSSIDKAAKRIREM 889

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + + + HG+M++   E  +  F      +L+ TT+IE G+D+ +A+ +I+E A+ 
Sbjct: 890  VPE--ARVVVAHGQMNEETLEKTVQGFWEREFDVLVCTTIIETGLDISNANTLIVERADS 947

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
             GL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    D   G  +A +DL
Sbjct: 948  LGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDL 1007

Query: 626  KQRKEGEILGIKQSG 640
            + R  G +LG +QSG
Sbjct: 1008 EIRGAGNVLGAEQSG 1022


>gi|167463169|ref|ZP_02328258.1| transcription-repair coupling factor [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 1150

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/378 (34%), Positives = 209/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI++I +DM +   M R+L GDVG GKT VA+ A   A   G Q  ++ P
Sbjct: 609 PYDETHDQLRAIEEIKKDMEKPLPMDRLLCGDVGYGKTEVAIRAAFKAAIDGKQVAVLVP 668

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE  ++   +    +++++    +  + + ++ I  G   I+IGTH L    
Sbjct: 669 TTILAQQHYETFRERFADFPFNIQVMSRFRSKKEQNETIKSIKAGTVDIVIGTHRLLSQD 728

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++ +L L+IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 729 VKFKELGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIE 788

Query: 450 EKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T ++      + E IER    L+   + Y++  +++         + ++ 
Sbjct: 789 TPPENRFPVQTYVLEHTPTLVREAIER---ELAREGQVYYLFNRVQ-----GITQIADQI 840

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           + L      S+A  HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +
Sbjct: 841 SMLVPDARVSVA--HGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHD 898

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+QLRGRVGR   I+     Y     L++ +  RL  +K  TE   GF IA 
Sbjct: 899 ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAM 958

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G +LG +Q G
Sbjct: 959 RDLAIRGAGNLLGAEQHG 976


>gi|77463357|ref|YP_352861.1| transcription-repair coupling factor (helicase) [Rhodobacter
           sphaeroides 2.4.1]
 gi|77387775|gb|ABA78960.1| transcription-repair coupling factor (helicase) [Rhodobacter
           sphaeroides 2.4.1]
          Length = 1165

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 210/381 (55%), Gaps = 21/381 (5%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q SAI D+++D+   + M R++ GDVG GKT VA+ A   A  AG Q  ++ 
Sbjct: 601 FPYQETDDQLSAIADVVKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAALAGMQVAVIC 660

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LA+QH+    +  +   + V  ++  +      +    +A G   I IGTHAL   
Sbjct: 661 PTTLLARQHFRSFAERFRGFPMKVHQLSRFVSAREAAETRSGLADGTVDICIGTHALLAK 720

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++   L L+I+DE+  FGV  + +L +  +  HVL +TATPIPRTL L+  G  D+S I
Sbjct: 721 GVKLKNLGLLIIDEEQHFGVSHKERLKEMRSEVHVLTLTATPIPRTLQLSLTGVRDLSII 780

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVE 505
              P  R  I+T    ++  D V  R + +L E   G +++++ P++ +  +      +E
Sbjct: 781 ATPPVDRLAIRTY---VSEFDTVTIR-EALLRERYRGGQSFFVVPRLSDLPD------ME 830

Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            F  L +H    S  + HG+++  + +  M++F +G   +L+ATT++E G+D+  A+ +I
Sbjct: 831 AF--LRDHVPEVSYVVAHGQLAAGELDERMNAFYDGKFDVLLATTIVESGLDIPTANTMI 888

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619
           +  A+ FGL+QL+Q+RGRVGR +  + C L   P  PL+  +  RL +L + +    GF 
Sbjct: 889 VHRADMFGLSQLYQIRGRVGRAKTRAYCYLTTKPRAPLTPQAIKRLRLLASLDSLGAGFN 948

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL  R  G +LG +QSG
Sbjct: 949 LASHDLDLRGAGNLLGEEQSG 969


>gi|21673485|ref|NP_661550.1| transcription-repair coupling factor [Chlorobium tepidum TLS]
 gi|21646591|gb|AAM71892.1| transcription-repair coupling factor [Chlorobium tepidum TLS]
          Length = 1113

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/428 (30%), Positives = 229/428 (53%), Gaps = 21/428 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q  AI+++ +DM   + M R++ GD G GKT +A+ A   AVE   Q  I+ P 
Sbjct: 546 FEETPDQLKAIQEVKKDMQSPSPMDRLICGDAGFGKTEIAMRAAFKAVENKKQVAILTPT 605

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            IL  QH E   +   N  + + +++  +P+  +++ +ERIA G   I+IGTH L    +
Sbjct: 606 TILTHQHGESFARRFANFPVNIAVLSRFVPRKEQKETIERIASGAMDIVIGTHRLVSKDV 665

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+++DE+  FGV+ + KL  +      L M+ATPIPRT+  + LG  DIS ++ 
Sbjct: 666 VFKDLGLLVIDEEQHFGVEVKEKLRHQFPGVDTLTMSATPIPRTMQFSMLGARDISIVST 725

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--NFRSVVERFN 508
            P  R+P++T+I   +  + V   +K  +    + +++  +I   +E+    R +V    
Sbjct: 726 PPKNRQPVETIITEFDP-ETVRAAIKREIQREGQVFFLHNRITSLEETALKLRELVP--- 781

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                  + +A  HG+M   + E+VM  F      +LI+T++I  G+D+ +A+ III  A
Sbjct: 782 ------YARMATAHGQMPAKELENVMMDFMQQELDVLISTSIIGSGLDISNANTIIINRA 835

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEE 623
           + FGL+ L+QLRGRVGR E  + C L+  P   L + +  R++V++  TE   G  +A  
Sbjct: 836 DMFGLSDLYQLRGRVGRSERKAYCYLITPPLHTLKREAVQRIAVIETFTELGSGINVALR 895

Query: 624 DLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
           DL  R  G +LG +QSG      F + Q  + +++ E+   +  H+ + D +  +++ Q 
Sbjct: 896 DLDIRGAGNLLGAEQSGFIHEIGFDLYQKMIEETVAELKLTEFNHLFS-DSEKAALKPQR 954

Query: 681 IRILLYLY 688
              +++ +
Sbjct: 955 PCDMIFFF 962


>gi|157363476|ref|YP_001470243.1| DEAD/DEAH box helicase domain-containing protein [Thermotoga
           lettingae TMO]
 gi|157314080|gb|ABV33179.1| DEAD/DEAH box helicase domain protein [Thermotoga lettingae TMO]
          Length = 939

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/396 (30%), Positives = 217/396 (54%), Gaps = 19/396 (4%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G+ +  + ++ ++     P++ T  Q +AI+++L D++    M R+L GD G GKT VAL
Sbjct: 393 GLSLPGDPELEKRFAEFFPYAETDDQMTAIEEVLSDLANDKPMDRLLCGDAGYGKTEVAL 452

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A    V +G Q  ++ P  +LA+QHY+   +      I V ++  ++    +++ L+ +
Sbjct: 453 RAAFKCVVSGKQVAVLVPTTVLARQHYKIFTQRMSPFGIQVRLLDRSISTIMKKEILDGL 512

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G+  +IIGTHAL Q+++++  L LVI+DE+  FGV+Q+ K  Q  T  +VL ++ATPI
Sbjct: 513 FRGKIDVIIGTHALLQNNVRFSDLGLVIIDEEQSFGVEQKEKFKQLRTNVNVLSLSATPI 572

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWIC 489
           PRTL +   G  D+S I   P GR P   VI  + +    + R  V+  ++ G +  ++ 
Sbjct: 573 PRTLHMAMTGMKDLSVINTPPIGRLP---VITYVAKYSNQLVRGAVLREINRGGQVIYVH 629

Query: 490 PQIEEKKE--SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +I + ++   N + ++           + I + HG+M        + SF      +++ 
Sbjct: 630 NRIHDIQDVYQNLQHIIPE---------AKIVLAHGKMGIRKLTEAVRSFYEHDSDVILC 680

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T+++E GID+ +A+ II++++  +GLAQL+QLRGRVGR  + +    L+   +S+ +  R
Sbjct: 681 TSILESGIDIPNANTIIVDDSHRYGLAQLYQLRGRVGRSTKRAFAYFLHDSEISEKALQR 740

Query: 608 LSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           L  +K    +  GF +A  D++ R  G + G +Q G
Sbjct: 741 LQAIKQLTGSGSGFQLALRDMQIRGVGSVFGFEQHG 776


>gi|332558234|ref|ZP_08412556.1| transcription-repair coupling factor [Rhodobacter sphaeroides WS8N]
 gi|332275946|gb|EGJ21261.1| transcription-repair coupling factor [Rhodobacter sphaeroides WS8N]
          Length = 1165

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 210/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q SAI D+++D+   + M R++ GDVG GKT VA+ A   A  AG Q  ++ P
Sbjct: 602 PYQETDDQLSAIADVVKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAALAGMQVAVICP 661

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH+    +  +   + V  ++  +      +    +A G   I IGTHAL    
Sbjct: 662 TTLLARQHFRSFAERFRGFPMKVRQLSRFVSAKEAAETRAGLADGTVDICIGTHALLAKG 721

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++   L L+I+DE+  FGV  + +L +  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 722 VKLKNLGLLIIDEEQHFGVSHKERLKEMRSEVHVLTLTATPIPRTLQLSLTGVRDLSIIA 781

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P++ +  +      +E 
Sbjct: 782 TPPVDRLAIRTY---VSEFDTVTIR-EALLRERYRGGQSFFVVPRLSDLPD------MEA 831

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L +H    S  + HG+++  + +  M++F +G   +L+ATT++E G+D+  A+ +I+
Sbjct: 832 F--LRDHVPEVSYVVAHGQLAAGELDERMNAFYDGKFDVLLATTIVESGLDIPTANTMIV 889

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
             A+ FGL+QL+Q+RGRVGR +  + C L   P  PL+  +  RL +L + +    GF +
Sbjct: 890 HRADMFGLSQLYQIRGRVGRAKTRAYCYLTTKPRAPLTPQAIKRLRLLASLDSLGAGFNL 949

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +QSG
Sbjct: 950 ASHDLDLRGAGNLLGEEQSG 969


>gi|150021721|ref|YP_001307075.1| DEAD/DEAH box helicase domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149794242|gb|ABR31690.1| DEAD/DEAH box helicase domain protein [Thermosipho melanesiensis
           BI429]
          Length = 901

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 216/397 (54%), Gaps = 20/397 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G+P+  + ++ ++     P   T+ Q  AI+++ +D+S    M R++ GD G GKT VA+
Sbjct: 367 GLPLPGDPELEKEFANTFPHIETEDQLKAIEEVSEDLSADKNMDRLIAGDAGYGKTEVAM 426

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A    V +G Q  ++ P  +LA+QH+E  +K  +   I VE+   ++    +    E +
Sbjct: 427 RAAFKTVVSGKQVALLVPTTVLARQHFENFQKRFKKFGIKVELYDNSLTPKQKENVKENV 486

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G   I+IGTH +   S+++  L L+I+DE+ +FGV Q+    +     ++L M+ATPI
Sbjct: 487 KKGITDIVIGTHGIIA-SMKFSDLGLLIIDEEQKFGVHQKESFKKIRVNINILSMSATPI 545

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWIC 489
           PRTL +   G  D+S +   P GRK I+     +++ DE I R  ++  ++ G +  ++ 
Sbjct: 546 PRTLHMALSGIKDMSILKTPPIGRKNIQVF---VSKFDERIARQAILREVNRGGQVLYVH 602

Query: 490 PQIEEKKE--SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            ++   K+   N + +V             I I HG+MS    E ++  F +G   +L++
Sbjct: 603 NRVNTIKDVADNLKKIVPEV---------KIEIAHGQMSKRKMEKIIKEFYDGNLDVLVS 653

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T++IE GID+ +A+ +I++++  +GL+QL+QLRGRVGR E+ +     +   ++K +  R
Sbjct: 654 TSIIENGIDIPNANTLIVDDSHRYGLSQLYQLRGRVGRSEKRAFAYFFHPSKINKTAQER 713

Query: 608 LSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQSGM 641
           L  +K       G  IA +D++ R  G ILG++Q G 
Sbjct: 714 LKAIKEIMGPGSGLQIALKDMEIRGIGNILGLEQHGF 750


>gi|240137759|ref|YP_002962231.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           AM1]
 gi|240007728|gb|ACS38954.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           AM1]
          Length = 1080

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 152/453 (33%), Positives = 240/453 (52%), Gaps = 16/453 (3%)

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIK 282
           AR RL  +  LA     +L   Q ++E   P I    +  ++      +  T  Q  A++
Sbjct: 495 ARRRLEAEATLAKAARAMLKAAQERREAHAPQIVPPEREMERFAAGFGYPLTGDQAGAVE 554

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           + L D++++  M R++ GDVG GKT VAL A AAA+ AG Q  +MAP  +L +QH E  +
Sbjct: 555 ETLADLAREMPMDRLVCGDVGFGKTEVALRAAAAAIFAGRQVAVMAPTTVLVRQHVETFR 614

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +      I V  ++  +  A  ++  + +A G   +++GT AL    + ++ L L I+DE
Sbjct: 615 RRFARFGIEVAHLSRLVSPAEAKRVKQGLADGSVRLVVGTQALAGRGVSFHDLGLAIIDE 674

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + RFG + +  L + A   H+L ++ATPIPRTL    +G   +S I   PA R+PI+TVI
Sbjct: 675 EQRFGAKTKASLRKAAGDAHILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQPIRTVI 734

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
            P      +   L+     G +++ +CP+IE     +   + +R  +L       +   H
Sbjct: 735 APFEET-TLAAALRREHRRGGQSFVVCPRIE-----DIAPMAKRLRALVPGL--DVVTAH 786

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G M   + +  M  F +G   +L+AT++IE G+DV  A+ +++ +AE FGLAQLHQLRGR
Sbjct: 787 GEMKPAEMDDAMVRFADGNGDVLLATSIIESGLDVPRANTMLVWDAERFGLAQLHQLRGR 846

Query: 583 VGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIK 637
           VGRG+      L  HP  PLS ++  RL  L+  +    GF I+  DL  R  G+++G  
Sbjct: 847 VGRGQRRGVVYLFGHPDKPLSPSTEKRLRTLEALDRLGAGFAISARDLDLRGAGDLVGDD 906

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           QSG  K +     L+  LL++A + AK    +D
Sbjct: 907 QSGHVKLVGLG--LYQHLLQLALRAAKGEAAED 937


>gi|325281936|ref|YP_004254478.1| transcription-repair coupling factor [Odoribacter splanchnicus DSM
           20712]
 gi|324313745|gb|ADY34298.1| transcription-repair coupling factor [Odoribacter splanchnicus DSM
           20712]
          Length = 1104

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 141/410 (34%), Positives = 209/410 (50%), Gaps = 19/410 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  + KKE     + +  + +++  +  +  T  Q  AI+ +  DM +   M R++ 
Sbjct: 510 LIALYARRKKEAAFAFSKDSYLQEEMEVSFMYDETPDQIKAIEAVKADMEKPQVMDRLIC 569

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY    +  +     VE I+   
Sbjct: 570 GDVGFGKTEVAIRAAFKAVADSKQVAVLVPTTVLAYQHYHTFSRRLEGMPCRVEYISRMK 629

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                +K L  +  G+  IIIGTH L    + +  L L+IVDE+ +FGV  + KL     
Sbjct: 630 KPGEIKKILNDLKEGKVDIIIGTHRLTSKDVVFKDLGLLIVDEEQKFGVGVKEKLKTLKL 689

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKV 477
               L MTATPIPRTL  + +G  D+S I   P  R PI T    ++R DE  + E +  
Sbjct: 690 NVDTLTMTATPIPRTLQFSLMGARDMSIIRTPPPNRYPIVT---ELHRFDEQLIKEVILY 746

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            ++   + ++I  ++E       R +      +     + +A  HG+M   + E VM  F
Sbjct: 747 EMARNGQVFFIHNRVE-----TIRDIQGMLQRIVPQVKTCVA--HGQMEGEELEKVMHDF 799

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G   +LIATT+IE G+D+ +A+ +II  A+++GL+ LHQLRGRVGR  + + C LL  
Sbjct: 800 VRGDYDVLIATTIIESGLDIPNANTMIINQAQNYGLSDLHQLRGRVGRSNKKAFCYLLTP 859

Query: 598 PPLSKNSYTRLSVLKNTED------GFLIAEEDLKQRKEGEILGIKQSGM 641
           P  + NS  R   LK  ED      GF IA +DL  R  G ILG +QSG 
Sbjct: 860 PLDTVNSDARRR-LKAIEDFSGLGSGFNIAMQDLDIRGAGNILGAEQSGF 908


>gi|283955886|ref|ZP_06373376.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792546|gb|EFC31325.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 620

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 149/401 (37%), Positives = 223/401 (55%), Gaps = 23/401 (5%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+++PFS TK Q +A+KDI +D+  K    R++ GDVG GKTLV L   AA +    QA+
Sbjct: 219 LKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLL--GAALMVYPKQAI 276

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA Q YE  KK+  +   I+ I  G      + K LE+    +A++IIGTHAL
Sbjct: 277 LMAPTSILAYQLYEEAKKFLPDFMNILFIKGGK-----KEKDLEQNIQ-KANLIIGTHAL 330

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               ++ +  +LV++DEQHRFG  QR K   L ++  APH +  +ATPIPRTL +     
Sbjct: 331 IH--LESHNAVLVMIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLSMIQSEL 388

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           ++ S I + P  +K I T  I      ++ E++K  +++  +   I P +       + S
Sbjct: 389 LNFSFIKQMPF-KKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLVSASDNIPYLS 447

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +       H+   + + HG+  D  K+ +++ F++    +L++TTV+EVGI +   S+
Sbjct: 448 LEQARGYWQSHY-EKVFVTHGK--DKQKDEILERFRD-EGNILLSTTVVEVGISLPRLSM 503

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I  AE  GLA LHQLRGRVGR    S+C L  +  L K   +RL    +T DGF IAE
Sbjct: 504 IVIVGAERLGLATLHQLRGRVGRVGLKSTCYL--YTKL-KEIPSRLKEFASTLDGFKIAE 560

Query: 623 EDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
            DLK R  G++L G  Q G  +F        + +LE  +KD
Sbjct: 561 LDLKNRFSGDLLDGFMQHG-NEFKFFDFSKDEEILEKVKKD 600


>gi|306841773|ref|ZP_07474459.1| transcription-repair coupling factor [Brucella sp. BO2]
 gi|306288178|gb|EFM59565.1| transcription-repair coupling factor [Brucella sp. BO2]
          Length = 1170

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 230/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++Q 
Sbjct: 589 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIEAVADDLAQG 644

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++          I 
Sbjct: 645 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLSIN 704

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV
Sbjct: 705 VAHASRLVGAKELAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGV 761

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 762 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 821

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M
Sbjct: 822 VIRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQM 870

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 871 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 930

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 931 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 988

Query: 639 SG 640
           SG
Sbjct: 989 SG 990


>gi|322381190|ref|ZP_08055193.1| transcription-repair coupling factor-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154766|gb|EFX47037.1| transcription-repair coupling factor-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 1173

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/378 (34%), Positives = 209/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI++I +DM +   M R+L GDVG GKT VA+ A   A   G Q  ++ P
Sbjct: 609 PYDETHDQLRAIEEIKKDMEKPLPMDRLLCGDVGYGKTEVAIRAAFKAAIDGKQVAVLVP 668

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHYE  ++   +    +++++    +  + + ++ I  G   I+IGTH L    
Sbjct: 669 TTILAQQHYETFRERFADFPFNIQVMSRFRSKKEQNETIKSIKAGTVDIVIGTHRLLSQD 728

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++ +L L+IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I 
Sbjct: 729 VKFKELGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIE 788

Query: 450 EKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T ++      + E IER    L+   + Y++  +++         + ++ 
Sbjct: 789 TPPENRFPVQTYVLEHTPTLVREAIER---ELAREGQVYYLFNRVQ-----GITQIADQI 840

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           + L      S+A  HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +
Sbjct: 841 SMLVPDARVSVA--HGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHD 898

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+QLRGRVGR   I+     Y     L++ +  RL  +K  TE   GF IA 
Sbjct: 899 ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAM 958

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G +LG +Q G
Sbjct: 959 RDLAIRGAGNLLGAEQHG 976


>gi|295104237|emb|CBL01781.1| transcription-repair coupling factor [Faecalibacterium prausnitzii
           SL3/3]
          Length = 1171

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 138/455 (30%), Positives = 227/455 (49%), Gaps = 21/455 (4%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWT-SPARERLAYDELLAGQIALLLMRKQFKKE 250
           DLL + + P   E   +     K    EW  + A+ + A +E+    I L   R+Q    
Sbjct: 538 DLLSRYTAPGDEEKVKLA----KLGGTEWQRTRAKVKKATEEMAQELIELYARRRQ---A 590

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            G     +G   +       +  T  Q  A  +I QDM +   M R+L GDVG GKT VA
Sbjct: 591 TGYAFPPDGDWQRDFETRFDYDETDDQLHATAEIKQDMEKGYPMDRLLCGDVGVGKTEVA 650

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           L A    +  G Q  ++AP  +LA QHY  +    +   + + +++       +++ L  
Sbjct: 651 LRAAFKCIMGGKQCALLAPTTLLAWQHYNTLLSRMEAFPVKIGMLSRFRTAKQQKETLRG 710

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           +  G   I++GTH L    ++++ L LVI+DE+ RFGV+ + KL +      +L ++ATP
Sbjct: 711 LQAGSVDIVVGTHRLLSKDVKFHDLGLVIIDEEQRFGVKHKEKLKENFIGVDMLTLSATP 770

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +   G  D+S I + P  R+P++T ++  N +  + E +K  L+ G + Y++  
Sbjct: 771 IPRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDV-ILAEAMKKELARGGQVYYLHN 829

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +++     N  +     + +     + + I HG+M++ +   V     NG   +L+ TT+
Sbjct: 830 RVD-----NIEACAAHVSQMVP--GARVGIAHGKMTEEELNPVWQHLLNGEIDILVCTTL 882

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRL 608
           IE GIDV + + +IIE+A+  GLAQL+Q+RGRVGR    +     +     L+  +  RL
Sbjct: 883 IETGIDVRNCNTLIIEDADRMGLAQLYQIRGRVGRSGRKAYAYFTFRRDKTLTDIAQKRL 942

Query: 609 SVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           S ++       GF IA  DL+ R  G +LG  Q G
Sbjct: 943 SAIREFTAFGSGFRIAMRDLQIRGAGSLLGHSQHG 977


>gi|148925843|ref|ZP_01809530.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145844829|gb|EDK21933.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 612

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 144/379 (37%), Positives = 215/379 (56%), Gaps = 22/379 (5%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+++PFS TK Q +A+KDI +D+  K    R++ GDVG GKTLV L   AA +    QA+
Sbjct: 224 LKDLPFSLTKDQLNALKDIEKDLHSKEARRRVIMGDVGCGKTLVLL--GAALMVYPKQAI 281

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA Q YE  KK+  +   I+ I  G      + K LE+    +A++IIGTHAL
Sbjct: 282 LMAPTSILAHQLYEEAKKFLPDFMNILFIKGGK-----KEKDLEQNIQ-KANLIIGTHAL 335

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               ++ +  +LV++DEQHRFG  QR K   L+++  APH +  +ATPIPRTL +     
Sbjct: 336 IH--LESHNAVLVMIDEQHRFGSAQREKIHSLSKQEFAPHFIQFSATPIPRTLSMIQSEL 393

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           ++ S I + P  +K I T  I      ++ E++K  +++  +   I P +       + S
Sbjct: 394 LNFSFIKQMPF-KKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLVSASDNIPYLS 452

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +       H+   + + HG+  D  K+ +++ F++    +L++TTV+EVGI +   S+
Sbjct: 453 LEQAKEYWQSHY-EKVFVTHGK--DKQKDEILERFRD-EGNILLSTTVVEVGISLPRLSM 508

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I  AE  GLA LHQLRGRVGR    S+C L  +  L K   +RL    +T DGF IAE
Sbjct: 509 IVIVGAERLGLATLHQLRGRVGRVGLKSTCYL--YTKL-KEIPSRLKEFASTLDGFKIAE 565

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DLK R  G++L G  Q G
Sbjct: 566 LDLKNRLSGDLLDGFMQHG 584


>gi|254720434|ref|ZP_05182245.1| transcription-repair coupling factor [Brucella sp. 83/13]
 gi|265985454|ref|ZP_06098189.1| transcription-repair coupling factor [Brucella sp. 83/13]
 gi|306838989|ref|ZP_07471810.1| transcription-repair coupling factor [Brucella sp. NF 2653]
 gi|264664046|gb|EEZ34307.1| transcription-repair coupling factor [Brucella sp. 83/13]
 gi|306405895|gb|EFM62153.1| transcription-repair coupling factor [Brucella sp. NF 2653]
          Length = 1171

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 230/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++Q 
Sbjct: 590 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIEAVADDLAQG 645

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++          I 
Sbjct: 646 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPIN 705

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV
Sbjct: 706 VAHASRLVGTKELAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGV 762

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 763 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 822

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M
Sbjct: 823 VIRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQM 871

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 872 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 931

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 932 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 989

Query: 639 SG 640
           SG
Sbjct: 990 SG 991


>gi|330443885|ref|YP_004376871.1| transcription-repair coupling factor [Chlamydophila pecorum E58]
 gi|328806995|gb|AEB41168.1| transcription-repair coupling factor [Chlamydophila pecorum E58]
          Length = 1070

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/390 (34%), Positives = 206/390 (52%), Gaps = 19/390 (4%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G+   K     P+  T  Q  AI+ I +DM  +  M R++ GD G GKT V + A   AV
Sbjct: 529 GEEVIKFAETFPYEETPDQLKAIEQIYEDMMSEKLMDRLICGDAGFGKTEVIMRAAVKAV 588

Query: 319 EAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             G  Q ++M P  ILA QHYE  K+      I + +I+       ++   +++A G   
Sbjct: 589 CDGHRQVIVMVPTTILAHQHYETFKQRMAGLPINIAVISRFSQTKEQKVIFQKVAEGGID 648

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH L    ++++   L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL +
Sbjct: 649 ILIGTHKLINKHLEFHHPGLLIIDEEQRFGVKIKESLKERYPNIDCLTVSATPIPRTLYM 708

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE-RLKVVLSEGKKAYWICPQIEE-- 494
           +  G  D+S IT  P  R P+ T ++  N  DE +   L+  L  G +AY I  +IE   
Sbjct: 709 SLTGARDLSIITMPPLDRLPVSTFLMEHN--DETLSAALRHELLRGGQAYVIHNRIESLF 766

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           +   N R+++           + I + HG+M+  +   +   FK     +LIAT +IE G
Sbjct: 767 RLAENIRTLIPE---------ARIGVAHGQMTSEELAKIFHKFKTQQTNILIATAIIENG 817

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLK 612
           ID+ +A+ I+I++A+ FG+A L+Q++GRVGR  + + C  L  +   LS  +  RL+ L 
Sbjct: 818 IDIPNANTILIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPAAKRLAALN 877

Query: 613 NTE--DGFLIAEEDLKQRKEGEILGIKQSG 640
             E   G  IA  DL+ R  G ILG  QSG
Sbjct: 878 KQEYGGGMKIALHDLEIRGAGNILGTDQSG 907


>gi|325996826|gb|ADZ52231.1| Transcription-repair coupling factor [Helicobacter pylori 2018]
 gi|325998418|gb|ADZ50626.1| Transcription-repair coupling factor [Helicobacter pylori 2017]
          Length = 1001

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/401 (33%), Positives = 216/401 (53%), Gaps = 26/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISRDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N  + V  +   +  + + K L+ +  GQ   +IGTHA+     
Sbjct: 543 TLLAHQHFETLRARFENFGVKVARLDRYIKTSEKNKLLKAVELGQVDALIGTHAIL--GA 600

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 601 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKT 660

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 661 PPTDRKPSRTFLKEKNDELLKEIIHR---ELRRNGQIFYIHNHIASISKVKTKLEELIPK 717

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 718 L---------KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 768

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 769 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKNLNEQALKRLLALEKNSYLGSGESIA 828

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 829 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 869


>gi|221639209|ref|YP_002525471.1| transcription-repair coupling factor [Rhodobacter sphaeroides
           KD131]
 gi|221159990|gb|ACM00970.1| Transcription-repair coupling factor [Rhodobacter sphaeroides
           KD131]
          Length = 1168

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 210/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q SAI D+++D+   + M R++ GDVG GKT VA+ A   A  AG Q  ++ P
Sbjct: 605 PYQETDDQLSAIADVVKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAALAGMQVAVICP 664

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH+    +  +   + V  ++  +      +    +A G   I IGTHAL    
Sbjct: 665 TTLLARQHFRSFSERFRGFPMKVRQLSRFVSAKEAAETRAGLADGTVDICIGTHALLAKG 724

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++   L L+I+DE+  FGV  + +L +  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 725 VKLKNLGLLIIDEEQHFGVSHKERLKEMRSEVHVLTLTATPIPRTLQLSLTGVRDLSIIA 784

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P++ +  +      +E 
Sbjct: 785 TPPVDRLAIRTY---VSEFDTVTIR-EALLRERYRGGQSFFVVPRLSDLPD------MEA 834

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L +H    S  + HG+++  + +  M++F +G   +L+ATT++E G+D+  A+ +I+
Sbjct: 835 F--LRDHVPEVSYVVAHGQLAAGELDERMNAFYDGKFDVLLATTIVESGLDIPTANTMIV 892

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
             A+ FGL+QL+Q+RGRVGR +  + C L   P  PL+  +  RL +L + +    GF +
Sbjct: 893 HRADMFGLSQLYQIRGRVGRAKTRAYCYLTTKPRAPLTPQAIKRLRLLASLDSLGAGFNL 952

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +QSG
Sbjct: 953 ASHDLDLRGAGNLLGEEQSG 972


>gi|182677886|ref|YP_001832032.1| transcription-repair coupling factor [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633769|gb|ACB94543.1| transcription-repair coupling factor [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 1173

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 141/427 (33%), Positives = 222/427 (51%), Gaps = 26/427 (6%)

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           AR R    E+ +G I +   R+  +    +P   EG  A+      P+  T+ Q++ I  
Sbjct: 579 ARMRRHILEMASGLIKVAAARETREAPKLVP--PEGLYAE-FCSGFPYEETEDQQATIDS 635

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           +L+D+S    M R++ GDVG GKT VAL A       G Q  ++ P  +LA+QHY+    
Sbjct: 636 VLEDLSSGKPMDRLVCGDVGFGKTEVALRAAFDTAINGKQVAVIVPTTLLARQHYKNFSA 695

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
              +  + V  ++  +  A  + A   I+ G   II+GTHA+    I +  L LVI+DE+
Sbjct: 696 RFAHLPVTVAQMSRMVSAADLKAAKAGISSGNVDIIVGTHAVLGKGITFKDLGLVIIDEE 755

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             FGV+ + +L +     HVL ++ATPIPRTL L   G  D+S I   P  R  ++T I 
Sbjct: 756 QHFGVKHKERLKELRAEVHVLTLSATPIPRTLQLAMTGVRDLSIIATPPVDRLAVRTFIS 815

Query: 464 PINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519
           P    D+++ R + +L E   G +++++ P+IE+ ++            L  H       
Sbjct: 816 P---FDDLLVR-EALLRERYRGGQSFYVAPRIEDLEDVA--------TYLRTHVPEVKFV 863

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M+  + E  M +F  G   +L++T ++E G+D+  A+ +I+  A+ FGLA L+QL
Sbjct: 864 VAHGQMAATELEDKMAAFYEGKYDVLLSTAIVESGLDIPTANTLIVHRADMFGLAALYQL 923

Query: 580 RGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           RGRVGR  +I +  L   PP   L+  +  RL VL + +    GF +A  DL  R  G +
Sbjct: 924 RGRVGR-SKIRAYALFTVPPNKTLTPQAERRLKVLSSLDTLGAGFQLASHDLDIRGAGNL 982

Query: 634 LGIKQSG 640
           LG  QSG
Sbjct: 983 LGDAQSG 989


>gi|126462211|ref|YP_001043325.1| transcription-repair coupling factor [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103875|gb|ABN76553.1| transcription-repair coupling factor [Rhodobacter sphaeroides ATCC
           17029]
          Length = 1165

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 210/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q SAI D+++D+   + M R++ GDVG GKT VA+ A   A  AG Q  ++ P
Sbjct: 602 PYQETDDQLSAIADVVKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAALAGMQVAVICP 661

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH+    +  +   + V  ++  +      +    +A G   I IGTHAL    
Sbjct: 662 TTLLARQHFRSFAERFRGFPMKVRQLSRFVSAKEAAETRAGLADGTVDICIGTHALLAKG 721

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++   L L+I+DE+  FGV  + +L +  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 722 VKLKNLGLLIIDEEQHFGVSHKERLKEMRSEVHVLTLTATPIPRTLQLSLTGVRDLSIIA 781

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P++ +  +      +E 
Sbjct: 782 TPPVDRLAIRTY---VSEFDTVTIR-EALLRERYRGGQSFFVVPRLSDLPD------MEA 831

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L +H    S  + HG+++  + +  M++F +G   +L+ATT++E G+D+  A+ +I+
Sbjct: 832 F--LRDHVPEVSYVVAHGQLAAGELDERMNAFYDGKFDVLLATTIVESGLDIPTANTMIV 889

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
             A+ FGL+QL+Q+RGRVGR +  + C L   P  PL+  +  RL +L + +    GF +
Sbjct: 890 HRADMFGLSQLYQIRGRVGRAKTRAYCYLTTKPRAPLTPQAIKRLRLLASLDSLGAGFNL 949

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL  R  G +LG +QSG
Sbjct: 950 ASHDLDLRGAGNLLGEEQSG 969


>gi|288924758|ref|ZP_06418695.1| transcription-repair coupling factor [Prevotella buccae D17]
 gi|288338545|gb|EFC76894.1| transcription-repair coupling factor [Prevotella buccae D17]
          Length = 1155

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/400 (32%), Positives = 208/400 (52%), Gaps = 15/400 (3%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++E G   + +  +  ++  +  +  T  Q  A +D+  DM     M R++ GDVG GKT
Sbjct: 569 RREKGFAYSADSYLQHELEASFLYEDTPDQNKATQDVKSDMESGRPMDRLVCGDVGFGKT 628

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A     Q  ++ P  +LA QHY+      +   + VE ++        ++ 
Sbjct: 629 EVAIRAAFKAACDSKQVAVLVPTTVLAFQHYQTFNSRLKGLPVRVEYLSRARSAKETKQV 688

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  +A G+  I+IGTH L   +++++ L L+I+DE+ +FGV  + KL +       L M+
Sbjct: 689 LADLAEGKIDILIGTHKLIGKAVKWHDLGLLIIDEEQKFGVSTKEKLRKLKVNVDTLTMS 748

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486
           ATPIPRTL  + +G  D+S I   P  R PI T +       EVI + +   +S   + Y
Sbjct: 749 ATPIPRTLQFSLMGARDMSIIRTPPPNRYPIHTELASYGH--EVIADAINFEMSRNGQVY 806

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           ++  +I    E    ++++++          IAI HG+M   + E ++  F N    +L+
Sbjct: 807 FVNDRISNLPE--IAALIKKYVP-----DCRIAIGHGQMKPEELEQIIMGFINYDYDVLL 859

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNS 604
           +TT++E GID+ +A+ III +A  FGL+ LHQ+RGRVGR    + C LL  P   L+  +
Sbjct: 860 STTIVENGIDISNANTIIINDAHRFGLSDLHQMRGRVGRSNRKAFCYLLAPPKSVLTPEA 919

Query: 605 YTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGM 641
             RL  L+N      GF +A +DL  R  G +LG +QSG 
Sbjct: 920 RRRLEALENFSGLGSGFNLAMQDLDIRGAGNLLGAEQSGF 959


>gi|163850727|ref|YP_001638770.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163662332|gb|ABY29699.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
          Length = 1111

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 153/453 (33%), Positives = 240/453 (52%), Gaps = 16/453 (3%)

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIK 282
           AR RL  +  LA     +L   Q ++E   P I    +  ++      +  T  Q  A++
Sbjct: 526 ARRRLEAEATLAKAARAMLKAAQERREAHAPQIVPPEREMERFAAGFGYPLTGDQAGAVE 585

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           + L D++++  M R++ GDVG GKT VAL A AAA+ AG Q  +MAP  +L +QH E  +
Sbjct: 586 ETLADLAREMPMDRLVCGDVGFGKTEVALRAAAAAIFAGRQIAVMAPTTVLVRQHVETFR 645

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +      I V  ++  +  A  ++  + +A G   +++GT AL    + ++ L L I+DE
Sbjct: 646 RRFARFGIEVAHLSRLVSPAEAKRVKQGLADGSVRLVVGTQALAGRGVSFHDLGLAIIDE 705

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + RFG + +  L + A   H+L ++ATPIPRTL    +G   +S I   PA R+PI+TVI
Sbjct: 706 EQRFGAKTKASLRKAAGDAHILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQPIRTVI 765

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
            P      +   L+     G +++ +CP+IE     +   + +R ++L       +   H
Sbjct: 766 APFEE-STLAAALRREHRRGGQSFVVCPRIE-----DIAPMAKRLHALVPGL--DVVTAH 817

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G M   + +  M  F +G   +L+AT++IE G+DV  A+ +++ +AE FGLAQLHQLRGR
Sbjct: 818 GEMKPAEMDDAMVRFADGNGDVLLATSIIESGLDVPRANTMLVWDAERFGLAQLHQLRGR 877

Query: 583 VGRGEEISSCILLYHP--PLSKNSYTR---LSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           VGRG+      L  HP  PLS ++  R   L VL     GF I+  DL  R  G+++G  
Sbjct: 878 VGRGQRRGVVYLFGHPDKPLSPSTEKRLRTLEVLDRLGAGFAISARDLDLRGAGDLVGDD 937

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           QSG  K +     L+  LL++A + AK    +D
Sbjct: 938 QSGHVKLVGLG--LYQHLLQLALRAAKGEAAED 968


>gi|189500626|ref|YP_001960096.1| transcription-repair coupling factor [Chlorobium phaeobacteroides
           BS1]
 gi|189496067|gb|ACE04615.1| transcription-repair coupling factor [Chlorobium phaeobacteroides
           BS1]
          Length = 1107

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 207/376 (55%), Gaps = 15/376 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q   I+ +  DM   + M R++ GD G GKT +A+ A   AVE+  Q  ++ P 
Sbjct: 540 FDETPDQLKTIEQVKNDMQSGSPMDRLICGDAGFGKTEIAMRASFKAVESNKQVALLTPT 599

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH E  ++  +N  + + +++  + +  ++  +E+I+ G   I+IGTH L    +
Sbjct: 600 TILAHQHAETFRRRFENVPLNIAVLSRFVTKKEQKNLIEKISRGLIDIVIGTHRLVSKDV 659

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+I+DE+  FGV  + KL Q       L M+ATPIPRTL  + LG  D+S ++ 
Sbjct: 660 VFQDLGLLIIDEEQHFGVSTKEKLRQSFPGVDTLTMSATPIPRTLQFSMLGARDLSIVST 719

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R+P++TVI   N  D +   ++  +S   + +++  +I          + +  N+L
Sbjct: 720 PPKNRQPVETVITQFNP-DTIRSAIQHEISRRGQVFFLHNRIA--------GLDQIRNTL 770

Query: 511 HEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            E    + I I HG+M   + E+VM  F +    LLI+T++I  G+D+ +A+ III  A+
Sbjct: 771 QELAPEARIGIAHGQMPTSELENVMMEFISHKLDLLISTSIIGSGLDISNANTIIINRAD 830

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEED 624
            FGL+ L+QLRGRVGR E  +   L+  P   L + +  RL+V+++ TE   GF IA  D
Sbjct: 831 MFGLSDLYQLRGRVGRSERKAYSYLIIPPVHTLKREAMERLAVIESFTELGSGFNIALRD 890

Query: 625 LKQRKEGEILGIKQSG 640
           L  R  G +LG +QSG
Sbjct: 891 LDIRGAGNLLGAEQSG 906


>gi|224372896|ref|YP_002607268.1| ATP-dependent DNA helicase RecG [Nautilia profundicola AmH]
 gi|223589754|gb|ACM93490.1| ATP-dependent DNA helicase RecG [Nautilia profundicola AmH]
          Length = 592

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 178/549 (32%), Positives = 271/549 (49%), Gaps = 68/549 (12%)

Query: 106 FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG 165
           F++  +  ++VF  G  I + G+IK  +    +V P  I   ++      I  +Y   T 
Sbjct: 75  FFQFKKWHESVFKTGNTIFIRGEIKNHQ----IVQPKPITRINE------ITPIYK--TN 122

Query: 166 LSVDLFKKIIVE--ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP 223
           L++   + +I +   L  L +LPE I K L               +H P+  +  +    
Sbjct: 123 LNIRSLRALIKKYVTLENLSILPEKIAKTLF-------------FMHFPQTKEHIQ---- 165

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
             E+     L   +I   L + + KK I   +++     +  + ++PF  TK Q   I D
Sbjct: 166 --EKEILYALKWAEIFNYLNKLKNKKRILPSVSINAN-PEPFISSLPFKLTKDQIKVIND 222

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           I  D+S  N+  R++ GDVGSGKT+V    M A      +++IM P  ILA Q YE   K
Sbjct: 223 IKNDISNTNQARRVVIGDVGSGKTIV----MLATAYMAEKSIIMCPTSILANQIYEEANK 278

Query: 344 Y------TQNTQII-VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           Y      T+N++   + ++T       + K  E      ++++IGTHAL   ++   ++ 
Sbjct: 279 YLNGQWKTKNSEAFKITLVT------QKSKFTEEDIQN-SNLLIGTHALLYQNLP--QVN 329

Query: 397 LVIVDEQHRFGVQQRL---KLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           +V+VDEQHRFG  QR    KLT      PH    +ATPIPRT  L     +++S I E P
Sbjct: 330 VVMVDEQHRFGTNQRAMLEKLTSNGNRVPHYFQFSATPIPRTQALIMSSFVNVSLIKELP 389

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             +K I T II       +I  ++  +++G +   + P +EE    N++S+ E  +   +
Sbjct: 390 F-KKDIDTYIISKEDFKSLIAHIQNEIAKGNQIVVVYPLVEESDNFNYQSIEEGKDFWLK 448

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +F   + I HG+  D +KE V+  F+     +LI TTVIEVGI +   + I+I  AE  G
Sbjct: 449 YF-DGVYITHGK--DKNKEEVLVEFRE-KGNILITTTVIEVGISLPRLTTIVIVGAERLG 504

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LA LHQLRGRVGR  +   C L  +   +K    RL    NT DGF IAE DL+ RK G+
Sbjct: 505 LATLHQLRGRVGRYGQKGYCFLYTNDKNNK----RLEAFANTLDGFKIAELDLEFRKSGD 560

Query: 633 IL-GIKQSG 640
           +L G  QSG
Sbjct: 561 LLDGKAQSG 569


>gi|15827046|ref|NP_301309.1| transcription-repair coupling factor [Mycobacterium leprae TN]
 gi|13092593|emb|CAC29760.1| putative transcription-repair coupling factor [Mycobacterium leprae]
          Length = 1224

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 202/375 (53%), Gaps = 13/375 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q +AI ++  DM +   M R++ GDVG GK  +A+ A   AV+ G Q  ++ P 
Sbjct: 651  FTETVDQLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPT 710

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH     +      + V+ ++     A  R  ++ +A G   I+IGTH L Q  +
Sbjct: 711  TLLADQHLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGV 770

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L LV+VDE+  FGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 771  CWKDLGLVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 830

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R P+ T + P +         + +L +G+  Y     +  +  S +++       +
Sbjct: 831  PPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFY-----VHNRVSSIYQAAARVCGLV 885

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             E   + + + HG+M +   E+ M  F N    +L+ TT++E G+D+ +A+ +++E A+ 
Sbjct: 886  PE---ARVVVAHGQMPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADT 942

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRL-SVLKNTE--DGFLIAEEDL 625
            FGL+QLHQLRGRVGR  E      LY P  PL++ +Y RL ++ +N E   G  +A +DL
Sbjct: 943  FGLSQLHQLRGRVGRSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDL 1002

Query: 626  KQRKEGEILGIKQSG 640
            + R  G +LG++QSG
Sbjct: 1003 EIRGAGNVLGVEQSG 1017


>gi|317014985|gb|ADU82421.1| transcription-repair coupling factor [Helicobacter pylori
           Gambia94/24]
          Length = 1001

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/401 (33%), Positives = 216/401 (53%), Gaps = 26/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISRDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E +K   +N  + V  +   +  + + K L+ +  GQ   +IGTHA+     
Sbjct: 543 TLLAHQHFETLKARFENFGVKVARLDRYIKTSEKSKLLKAVGLGQVDALIGTHAIL--GA 600

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L++VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 601 KFKNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKT 660

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 661 PPTDRKPSRTFLKEKNDELLKEIIYR---ELRRNGQIFYIHNHIASISKVKTKLEELIPK 717

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 718 LK---------IAILHSQINAHESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 768

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 769 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKNLNEQALKRLLALEKNSYLGSGESIA 828

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 829 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 869


>gi|75675705|ref|YP_318126.1| transcription-repair coupling factor [Nitrobacter winogradskyi
            Nb-255]
 gi|74420575|gb|ABA04774.1| transcription-repair coupling factor [Nitrobacter winogradskyi
            Nb-255]
          Length = 1174

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 144/448 (32%), Positives = 238/448 (53%), Gaps = 25/448 (5%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +AG++  +   +  ++   +P  V+  +  +     P+  T+ Q  AI+  L+D+     
Sbjct: 588  IAGELIRIAAERHLREAPKLP--VQSGLYDEFCARFPYEETEDQLGAIQASLEDLESGKP 645

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA+QH +   +  +   + V 
Sbjct: 646  MDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTFTERFRGFPVNVA 705

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
              +  +      K  + IA G   I++GTHAL   SI++  L L++VDE+  FGV  + +
Sbjct: 706  QASRLVSPKELAKVKKGIADGSVDIVVGTHALLGKSIKFRDLGLLVVDEEQHFGVSHKER 765

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEV 471
            L Q     HVL ++ATPIPRTL L   G  D+S I   P  R  ++T + P +   I E 
Sbjct: 766  LKQLRAHVHVLTLSATPIPRTLQLALTGVRDLSIIASPPVDRLAVRTFVAPHDPLMIREA 825

Query: 472  IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
            + R +     G +A+++ P++ +  E      V+ F  L +H     +A+ HG+M     
Sbjct: 826  LLRERY---RGGQAFYVVPRVSDLAE------VKDF--LDKHVPEMKVAVAHGQMPPTVI 874

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E ++ +F +G   +L++TT++E G+D+  A+ +I+  ++ FGLAQL+QLRGRVGR  ++ 
Sbjct: 875  EDIISAFYDGKYDVLLSTTIVESGLDIPTANTLIVHRSDMFGLAQLYQLRGRVGR-SKLR 933

Query: 591  SCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKF 644
            +  L   P    ++  +  RL VL++ E    GF +A  DL  R  G +LG +QSG  K 
Sbjct: 934  AYALFTLPSKHKITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKE 993

Query: 645  LIAQPELHDSLLEIARKDAKHILTQDPD 672
            +    EL+ S+LE A ++ K  +T+  D
Sbjct: 994  V--GFELYQSMLEEAIENLKTGVTEIAD 1019


>gi|89897946|ref|YP_515056.1| transcription-repair coupling factor [Chlamydophila felis Fe/C-56]
 gi|89331318|dbj|BAE80911.1| transcription-repair coupling factor-superfamily II helicase
           [Chlamydophila felis Fe/C-56]
          Length = 1084

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/390 (34%), Positives = 202/390 (51%), Gaps = 19/390 (4%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G+   K     P+  T  Q  AI+ I  DM     M R++ GD G GKT V + A   AV
Sbjct: 544 GEEVMKFAERFPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAV 603

Query: 319 EAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             G  Q ++M P  ILA QHYE   +      I + +++       ++K  E  A G   
Sbjct: 604 CDGHRQVIVMVPTTILANQHYETFSQRMAGLPIKIAVLSRFSEGKAKKKIFEDTAKGDVD 663

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH L   ++++    L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL +
Sbjct: 664 ILIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDFLKERYPMVDCLTVSATPIPRTLYM 723

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE-RLKVVLSEGKKAYWICPQIEE-- 494
           +  G  D+S IT  P  R P+ T I+  N  DE +   L+  L  G +AY I  +IE   
Sbjct: 724 SLSGARDLSLITMPPLDRLPVSTFILEHN--DETLSAALRHELLRGGQAYVIHNRIESIF 781

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           +  +  R++V           + IA+ HG+MS  +  S+   FK+    +L+AT +IE G
Sbjct: 782 RLGNTIRTLVPE---------ARIAVAHGQMSSDELASIFQKFKDQEINVLVATALIENG 832

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLK 612
           ID+ +A+ I+++ A+ FG+A L+Q++GRVGR    + C  L  +   LS  +  RL  L 
Sbjct: 833 IDIPNANTILVDQADKFGMADLYQMKGRVGRWNRKAYCYFLVPHLDRLSVPAAKRLEALN 892

Query: 613 NTE--DGFLIAEEDLKQRKEGEILGIKQSG 640
             E   G  IA  DL+ R  G ILG  QSG
Sbjct: 893 KQEYGGGMKIALHDLEIRGAGNILGTDQSG 922


>gi|15889082|ref|NP_354763.1| transcription-repair coupling factor [Agrobacterium tumefaciens str.
            C58]
 gi|15156884|gb|AAK87548.1| transcription-repair coupling factor [Agrobacterium tumefaciens str.
            C58]
          Length = 1165

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/407 (33%), Positives = 220/407 (54%), Gaps = 36/407 (8%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q +AI+ +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P
Sbjct: 618  PYDETEDQLNAIEAVRDDLGAGRPMDRLICGDVGFGKTEVALRAAFLAAMNGVQVAVVVP 677

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEI---ITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              +LA+QH+    +  +   I V+    + G+   A  +K    +A G+  I++GTHAL 
Sbjct: 678  TTLLARQHFRTFSERFRGLPIRVQQASRLVGSKELALTKK---EVAEGKTDIVVGTHALL 734

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
               I +  L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S
Sbjct: 735  GAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELS 794

Query: 447  KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
             IT  P  R  ++T I P + +  + E L      G +++++CP++ +            
Sbjct: 795  LITTPPVDRMAVRTFISPFDPL-VIRETLMREHYRGGQSFYVCPRLAD------------ 841

Query: 507  FNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
               +H    S      +A+ HG+M+  + E +M++F +G   +L++TT++E G+DV  A+
Sbjct: 842  LADIHAFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTAN 901

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT----RLSVLKNTED- 616
             +I+  A+ FGLAQL+QLRGRVGR +       L+  P++K   T    RL VL++ +  
Sbjct: 902  TLIVHRADMFGLAQLYQLRGRVGRSK--VRAFALFTLPVNKVLTTMAERRLKVLQSLDTL 959

Query: 617  --GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEI 658
              GF +A  DL  R  G +LG +QSG  K   F + Q  L +++ E+
Sbjct: 960  GAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEV 1006


>gi|86150348|ref|ZP_01068574.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85839173|gb|EAQ56436.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni CF93-6]
          Length = 978

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 212/379 (55%), Gaps = 23/379 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q+ A  +ILQD      M R+L GDVG GKT VA+ A+   V++G  A + AP 
Sbjct: 466 FIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPT 525

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L+ QHY+ +KK      I V  +      A +++ L+ +   +A +++GTHAL   S+
Sbjct: 526 TLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALL--SV 583

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKI 448
           +   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR+L   L+S+    + +I
Sbjct: 584 ECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSVLQI 643

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
              P  R  ++T +   +   + E I R    L  G + ++I   I   ++   + ++E 
Sbjct: 644 P--PEDRMDVRTFVKENDDALLKEAIAR---ELRRGGQIFYIHNHIASIEQCK-KHLLEL 697

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F++L       I I+H ++    +E  M  F+N    LL++T+++E GID+ +A+ II+E
Sbjct: 698 FSTLR------ILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVESGIDLPNANTIIVE 751

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIA 621
            ++ FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L++      G ++A
Sbjct: 752 KSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSLESNSFLGAGSILA 811

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G +LG+ QSG
Sbjct: 812 YHDLEIRGGGNLLGVDQSG 830


>gi|154496044|ref|ZP_02034740.1| hypothetical protein BACCAP_00328 [Bacteroides capillosus ATCC
           29799]
 gi|150274599|gb|EDN01663.1| hypothetical protein BACCAP_00328 [Bacteroides capillosus ATCC
           29799]
          Length = 1169

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 139/428 (32%), Positives = 228/428 (53%), Gaps = 16/428 (3%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +W  +  R + A  +L  G I L   R+   ++ G   + + +  ++      ++ T  Q
Sbjct: 566 DWEKAKTRAKKAVKDLAKGLIQLYAQRQ---RQPGFAFSPDSEWMREFEEQFEYTETDDQ 622

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              I +I  DM     M R+L GDVG GKT VA  A+   V  G QA I+ P  +LA+QH
Sbjct: 623 LRCIAEIKGDMEAPRPMDRLLCGDVGYGKTEVAFRAIMKCVLDGKQAAILVPTTVLARQH 682

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y   K+      + +++++     A  ++ L R+  GQ  ++IGTH LFQ  +++  L L
Sbjct: 683 YLSAKQRFAKYPVEIDVVSRFRTPAQMKETLRRVEAGQIDLLIGTHRLFQKDVKFKDLGL 742

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +++DE+ RFGV  + KL + +    VL ++ATPIPRTL +   G  D+S + E P+ R+P
Sbjct: 743 LVIDEEQRFGVAHKEKLKEMSRQVDVLTLSATPIPRTLNMALSGIRDMSTLEEPPSDRQP 802

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           ++T ++  +    + + ++  L  G + Y++  ++    E+  R+       L E  T  
Sbjct: 803 VQTYVLE-HDWGVLFDAMRRELERGGQVYYLHNRV----ETITRTAARIREMLGEDVT-- 855

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + + HG+MS  +   VM     G   +L+ TT+IE GID+ +A+ +IIE+A+  GLAQLH
Sbjct: 856 VGVAHGKMSQEELNDVMTRMSEGEVDVLVCTTIIETGIDISNANTLIIEDADKMGLAQLH 915

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           Q+RGRVGR    +   L +     LS+ +  RL  ++   +   GF IA  DL+ R  G 
Sbjct: 916 QIRGRVGRSSRRAYAYLTFRRGKVLSEVASKRLGAIREFAEFGSGFKIAMRDLEIRGAGN 975

Query: 633 ILGIKQSG 640
           +LG +QSG
Sbjct: 976 VLGPEQSG 983


>gi|160944870|ref|ZP_02092097.1| hypothetical protein FAEPRAM212_02386 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444054|gb|EDP21058.1| hypothetical protein FAEPRAM212_02386 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1171

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 138/455 (30%), Positives = 227/455 (49%), Gaps = 21/455 (4%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWT-SPARERLAYDELLAGQIALLLMRKQFKKE 250
           DLL + + P   E   +     K    EW  + A+ + A +E+    I L   R+Q    
Sbjct: 538 DLLSRYTAPGDEEKVKLA----KLGGTEWQRTRAKVKKATEEMAQELIELYARRRQ---A 590

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            G     +G   +       +  T  Q  A  +I QDM +   M R+L GDVG GKT VA
Sbjct: 591 TGYAFPPDGDWQRDFETRFDYDETDDQLHATAEIKQDMEKGYPMDRLLCGDVGVGKTEVA 650

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           L A    +  G Q  ++AP  +LA QHY  +    +   + + +++       +++ L  
Sbjct: 651 LRAAFKCIMGGKQCALLAPTTLLAWQHYNTLLSRMEAFPVKIGMLSRFRTAKQQKETLRG 710

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           +  G   I++GTH L    ++++ L LVI+DE+ RFGV+ + KL +      +L ++ATP
Sbjct: 711 LQAGSVDIVVGTHRLLSKDVKFHDLGLVIIDEEQRFGVKHKEKLKENFIGVDMLTLSATP 770

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +   G  D+S I + P  R+P++T ++  N +  + E +K  L+ G + Y++  
Sbjct: 771 IPRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDV-ILAEAMKKELARGGQVYYLHN 829

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +++     N  +     + +     + + I HG+M++ +   V     NG   +L+ TT+
Sbjct: 830 RVD-----NIEACAAHVSQMVP--GARVGIAHGKMTEEELNPVWQHLLNGEIDILVCTTL 882

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRL 608
           IE GIDV + + +IIE+A+  GLAQL+Q+RGRVGR    +     +     L+  +  RL
Sbjct: 883 IETGIDVRNCNTLIIEDADRMGLAQLYQIRGRVGRSGRKAYAYFTFRRDKTLTDIAQKRL 942

Query: 609 SVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           S ++       GF IA  DL+ R  G +LG  Q G
Sbjct: 943 SAIREFTAFGSGFRIAMRDLQIRGAGSLLGHSQHG 977


>gi|254465368|ref|ZP_05078779.1| transcription-repair coupling factor [Rhodobacterales bacterium
           Y4I]
 gi|206686276|gb|EDZ46758.1| transcription-repair coupling factor [Rhodobacterales bacterium
           Y4I]
          Length = 1151

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/398 (33%), Positives = 219/398 (55%), Gaps = 21/398 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI+D+++D+     M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 593 PYQETDDQLRAIEDVMEDLHSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVVAP 652

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH    K   +   + V  ++  +      K  E +  G   I++GTHA+   S
Sbjct: 653 TTLLARQHAASFKGRFRGFPLEVRQLSRFVAAKEASKTREGLGKGTVDIVVGTHAVLAKS 712

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 713 IKFQNLGLLIIDEEQHFGVAHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 772

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P+I     ++   V E 
Sbjct: 773 TPPVDRLAIRTY---VSEFDSVTIR-EALLREHYRGGQSFYVVPRI-----TDLPEVEEF 823

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             +     T  +A  HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++ 
Sbjct: 824 LKAQLPELTYVVA--HGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVH 881

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGL+QL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A
Sbjct: 882 RADMFGLSQLYQIRGRVGRSKTRAYAYLTTKPRQRLTPAAEKRLRVLGSLDTLGAGFTLA 941

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 942 SQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 977


>gi|83593061|ref|YP_426813.1| transcription-repair coupling factor [Rhodospirillum rubrum ATCC
            11170]
 gi|83575975|gb|ABC22526.1| Transcription-repair coupling factor [Rhodospirillum rubrum ATCC
            11170]
          Length = 1177

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 143/404 (35%), Positives = 219/404 (54%), Gaps = 21/404 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P++ T  Q  AI D L D++    M R++ GDVG GKT VAL A  A   +G Q  ++ P
Sbjct: 623  PYAETDDQLRAIADTLDDLAAGRPMDRLICGDVGFGKTEVALRAAFATAMSGRQVAVVVP 682

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QH+   K+      + +  ++  +     +   E +A G   I++GTHAL   +
Sbjct: 683  TTLLARQHHLTFKERFAGLPVRIGQLSRLVTARDTKAVKEEMAAGTLDIVVGTHALLAKT 742

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +++  L L+IVDE+  FGV  + +L Q     HVL +TATPIPRTL L   G  ++S I 
Sbjct: 743  VRFRDLGLLIVDEEQHFGVAHKERLKQMRADVHVLTLTATPIPRTLQLALTGVREMSIIA 802

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
              P  R  ++T ++P    D V+ R + +L E   G + +++CP++     ++   V+ER
Sbjct: 803  TPPVDRLAVRTFVLP---FDPVVVR-EAILRERFRGGQCFYVCPRL-----TDIDKVMER 853

Query: 507  FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              +L     + +A  HG+M+    E VM +F +G   +L+AT ++E G+D+  A+ III 
Sbjct: 854  LTTLVPDIRAVVA--HGQMAPSRLEEVMTAFADGQYDVLVATNIVESGLDIPRANTIIIH 911

Query: 567  NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621
             A+ FGLAQL+QLRGRVGR        L   P   +SK +  RL V++  +    GF +A
Sbjct: 912  RADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQTLDTLGAGFTLA 971

Query: 622  EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
              DL  R  G +LG +QSG  K +    EL+  LLE A   A+ 
Sbjct: 972  SHDLDIRGAGNLLGDEQSGHIKEV--GIELYQQLLEEAVAAARE 1013


>gi|310815553|ref|YP_003963517.1| transcription-repair coupling factor [Ketogulonicigenium vulgare
           Y25]
 gi|308754288|gb|ADO42217.1| transcription-repair coupling factor [Ketogulonicigenium vulgare
           Y25]
          Length = 1152

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 134/428 (31%), Positives = 230/428 (53%), Gaps = 24/428 (5%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           ++   +I ++ L   P+  T  Q  AI D++ D+   + M R++ GDVG GKT VA+ A 
Sbjct: 580 VDPPSEIWEQFLARFPYQETDDQLQAIGDVIGDLQAGSPMDRLICGDVGFGKTEVAIRAA 639

Query: 315 AAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
             A  +G Q  ++AP  +LA+QH+    E  + +  N + +   ++    +A R+     
Sbjct: 640 FVAAMSGLQVAVVAPTTLLARQHFKSFAERFRGFPLNVRPLSRFVSAKEAEATRKG---- 695

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           +A G   ++IGTHA+    +++  L L+++DE+  FGVQ + +L Q  +  HVL +TATP
Sbjct: 696 LADGTVDVVIGTHAVLAKGVKFKSLGLLVIDEEQHFGVQHKERLKQMRSDIHVLTLTATP 755

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL L+  G  D+S I   P  R  I+T +   + I  V E L      G +++ + P
Sbjct: 756 IPRTLQLSLTGVRDLSIIGTPPIDRLAIRTYVSEFDTI-TVREALLREHYRGGQSFIVVP 814

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           ++ +  E      ++R     ++ T+     HG+M+  + +  M++F +G   +L+ATT+
Sbjct: 815 RLSDLPE--MEEFLQREVPEVKYVTA-----HGQMAAGELDDRMNAFYDGKYDVLLATTI 867

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRL 608
           +E G+D+  A+ +I+  A+ FGLAQL+Q+RGRVGR +  +   L   P   L+  +  RL
Sbjct: 868 VESGLDIPTANTMIVHRADMFGLAQLYQIRGRVGRSKVRAYAYLTTKPRQKLTPAAEKRL 927

Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKD 662
            VL + +    GF +A +DL  R  G +LG +QSG  +   + + Q  L D +  I   +
Sbjct: 928 RVLGSLDSLGAGFQLASQDLDIRGAGNLLGEEQSGQIREVGYELYQQMLEDEIARIKSGE 987

Query: 663 AKHILTQD 670
           ++ +   D
Sbjct: 988 SEGLPNND 995


>gi|89900125|ref|YP_522596.1| transcription-repair coupling factor [Rhodoferax ferrireducens T118]
 gi|89344862|gb|ABD69065.1| transcription-repair coupling factor [Rhodoferax ferrireducens T118]
          Length = 1175

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 219/423 (51%), Gaps = 21/423 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   A+  G Q   +AP 
Sbjct: 622  FEETADQSAAIHAVIQDMISPRPMDRLICGDVGFGKTEVALRAAFIAITGGKQVAFLAPT 681

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QHY+ +        + V  ++          A++ IA G   I++GTH L     
Sbjct: 682  TLLAEQHYQTLVDRFSKWPVKVAEMSRFRSAKEITAAMKGIADGTIDIVVGTHKLLSKDT 741

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L L+I+DE+HRFGV+ + ++        VL +TATPIPRTL +   G  D+S I  
Sbjct: 742  HFKDLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSVIAT 801

Query: 451  KPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             P  R  IKT +       I E + R    L  G + Y++  ++E  +  N R+ +E   
Sbjct: 802  APQRRLAIKTFVRTEGAGVIREAVLR---ELKRGGQVYFLHNEVETIE--NRRAKLEEL- 855

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
             L E   + IA+ HG+M +   E+VM  F      LL+ +T+IE GIDV  A+ I++  A
Sbjct: 856  -LPE---ARIAVAHGQMPERQLEAVMRDFVAQRFNLLLCSTIIETGIDVPTANTIVMARA 911

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
            + FGLAQLHQLRGRVGR    +   L+      L+K +  RL  ++  E+   GF +A  
Sbjct: 912  DKFGLAQLHQLRGRVGRSHHQAYAYLMVPDLEGLTKQAQQRLDAIQQMEELGSGFYLAMH 971

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            DL+ R  GE+LG  QSG    L    +L++ +L  A +  K  +  +PDL S    S  I
Sbjct: 972  DLEIRGAGEVLGENQSG--NMLEVGFQLYNEMLSEAVRCLKAGI--EPDLLSPLNVSTDI 1027

Query: 684  LLY 686
             L+
Sbjct: 1028 NLH 1030


>gi|86138342|ref|ZP_01056916.1| transcription-repair coupling factor [Roseobacter sp. MED193]
 gi|85824867|gb|EAQ45068.1| transcription-repair coupling factor [Roseobacter sp. MED193]
          Length = 1153

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 136/399 (34%), Positives = 221/399 (55%), Gaps = 23/399 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI++++ D++    M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 593 PYQETDDQLRAIQEVMADLTSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVVAP 652

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH     +  +   + V  ++  +      K  E +A G   I+IGTHAL   +
Sbjct: 653 TTLLARQHAASFAERFRGFPLEVRQLSRFVSAKEAAKTREGMAKGTVDIVIGTHALLAKN 712

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 713 IRFNNLGLLIIDEEQHFGVGHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 772

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P+I +  E      +E 
Sbjct: 773 TPPVDRLAIRTY---VSEFDAVTLR-EALLREHYRGGQSFYVVPRISDLPE------IEA 822

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F  L E     +  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++
Sbjct: 823 F--LKEQLPELTYVVAHGQMAPGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVV 880

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
             A+ FGL+QL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +
Sbjct: 881 HRADMFGLSQLYQIRGRVGRSKTRAYAYLTTKPRQRLTPAAEKRLRVLGSLDTLGAGFTL 940

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           A +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 941 ASQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 977


>gi|161620641|ref|YP_001594527.1| transcription-repair coupling factor [Brucella canis ATCC 23365]
 gi|260568134|ref|ZP_05838603.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|161337452|gb|ABX63756.1| transcription-repair coupling factor [Brucella canis ATCC 23365]
 gi|260154799|gb|EEW89880.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 1170

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 230/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++Q 
Sbjct: 589 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIEAVADDLAQG 644

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++          I 
Sbjct: 645 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPIN 704

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV
Sbjct: 705 VAHASRLVGAKELAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGV 761

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 762 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPF 821

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M
Sbjct: 822 VIRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQM 870

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 871 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 930

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 931 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 988

Query: 639 SG 640
           SG
Sbjct: 989 SG 990


>gi|260463949|ref|ZP_05812145.1| transcription-repair coupling factor [Mesorhizobium opportunistum
            WSM2075]
 gi|259030324|gb|EEW31604.1| transcription-repair coupling factor [Mesorhizobium opportunistum
            WSM2075]
          Length = 1165

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 144/452 (31%), Positives = 235/452 (51%), Gaps = 42/452 (9%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +AGQ+  +   +Q +    + +  EG +  +     P+  T  Q++AI  +  D+     
Sbjct: 582  MAGQLIRIAAERQMRAAPAL-VPAEG-LYDEFSARFPYEETDDQQTAIDSVRDDLGAGKP 639

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV- 352
            M R++ GDVG GKT VAL A   A   G Q  ++ P  +L++QH++   +      I V 
Sbjct: 640  MDRLICGDVGFGKTEVALRAAFIAAMEGFQVAVVVPTTLLSRQHFKTFSQRFSGLPIRVA 699

Query: 353  --EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
                + G    A  +K    IA GQ  I+IGTHAL   +I +  L L+I+DE+  FGV+ 
Sbjct: 700  QASRLVGAKELAETKKG---IAEGQVDIVIGTHALLGSAISFKNLGLLIIDEEQHFGVKH 756

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--I 468
            + +L    T  HVL ++ATPIPRTL L   G  ++S I   P  R  ++T I P +   I
Sbjct: 757  KERLKDLKTDVHVLTLSATPIPRTLQLALTGVRELSLIATPPVDRMAVRTFISPFDPLVI 816

Query: 469  DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-----IAIIHG 523
             E + R +     G  ++++ P+I +  E            +H+    S     +A+ HG
Sbjct: 817  RETLLRERY---RGGHSFYVVPRISDLAE------------IHDFLRESVPELKVAVAHG 861

Query: 524  RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +M   + + +M++F +G   +L++TT++E G+D+  A+ +II  A+ FGL+QL+QLRGRV
Sbjct: 862  QMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTLIIHRADMFGLSQLYQLRGRV 921

Query: 584  GRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIK 637
            GR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  R  G +LG +
Sbjct: 922  GR-SKVRAYALFTLPANRKLTDTAERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEE 980

Query: 638  QSGMPK---FLIAQPELHDSLLEIARKDAKHI 666
            QSG  K   F + Q  L +++ E+  KD+  +
Sbjct: 981  QSGHIKEVGFELYQQMLEEAVAEV--KDSGEV 1010


>gi|116515116|ref|YP_802745.1| hypothetical protein BCc_180 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256970|gb|ABJ90652.1| transcription-repair coupling factor [Buchnera aphidicola str. Cc
           (Cinara cedri)]
          Length = 683

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 144/406 (35%), Positives = 226/406 (55%), Gaps = 30/406 (7%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q+++IK+I+QDM +   M R+L GDVG GKT +A+ A   A++   Q  I+ P 
Sbjct: 133 YHITLDQKNSIKEIIQDMKKSVPMDRLLCGDVGFGKTEIAMRATFIALDNKKQVAILVPT 192

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LAQQHY   K      +  + + +        +   ++I +G+ +I+IGTH +    +
Sbjct: 193 TLLAQQHYNTFKNRFSEYKYKINVYSRFTSSKKEKIIKKKIKNGKINILIGTHKILSKYL 252

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+I+DE+HRFGV  + K+ +      +L +TATPIPRTL ++ LG  D+S I+ 
Sbjct: 253 IWKNLGLLIIDEEHRFGVFHKEKIKKLYINIDILTLTATPIPRTLNMSILGIKDLSIIST 312

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWI---CPQIEEKKESNFRSVV 504
            P  R  IKT I   N   ++I   KV+L E K+    Y++      IEEKK+     + 
Sbjct: 313 PPKKRLKIKTFI--KNFHPKIIR--KVILRELKRKGQVYYLFNRVKNIEEKKKYLLYLIP 368

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           E          + I I HG+M+  D   +M  F N    +LI TT+I+  I++ + + +I
Sbjct: 369 E----------ARIEISHGKMNSKDLYKIMYDFFNKKFDILICTTIIDTEINISNVNTMI 418

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNTED---GF 618
           IENA+ FGL+QLHQLRGR+GR +  +    L  P L   +K +  RL+++KN  D   G 
Sbjct: 419 IENADKFGLSQLHQLRGRIGRSKRQAYAFFLI-PNLNKINKKAKKRLNIIKNYTDLGSGL 477

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARK 661
           ++++ DL+ R  GE+LG  QSG  K   F + +  L +S+L+I +K
Sbjct: 478 ILSKHDLEIRGVGELLGTNQSGHIKTIGFKLYKKFLKESILKIKQK 523


>gi|256157728|ref|ZP_05455646.1| transcription-repair coupling factor [Brucella ceti M490/95/1]
 gi|256253301|ref|ZP_05458837.1| transcription-repair coupling factor [Brucella ceti B1/94]
 gi|261220415|ref|ZP_05934696.1| transcription-repair coupling factor [Brucella ceti B1/94]
 gi|265996234|ref|ZP_06108791.1| transcription-repair coupling factor [Brucella ceti M490/95/1]
 gi|260918999|gb|EEX85652.1| transcription-repair coupling factor [Brucella ceti B1/94]
 gi|262550531|gb|EEZ06692.1| transcription-repair coupling factor [Brucella ceti M490/95/1]
          Length = 1170

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 230/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++Q 
Sbjct: 589 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIEAVADDLAQG 644

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++          I 
Sbjct: 645 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPIN 704

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV
Sbjct: 705 VAHASRLVGAKELAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGV 761

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 762 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 821

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M
Sbjct: 822 VIRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQM 870

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 871 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 930

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 931 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 988

Query: 639 SG 640
           SG
Sbjct: 989 SG 990


>gi|225686365|ref|YP_002734337.1| transcription-repair coupling factor [Brucella melitensis ATCC
           23457]
 gi|256262494|ref|ZP_05465026.1| transcription-repair coupling factor Mfd [Brucella melitensis bv. 2
           str. 63/9]
 gi|225642470|gb|ACO02383.1| transcription-repair coupling factor [Brucella melitensis ATCC
           23457]
 gi|263092231|gb|EEZ16528.1| transcription-repair coupling factor Mfd [Brucella melitensis bv. 2
           str. 63/9]
 gi|326410736|gb|ADZ67800.1| transcription-repair coupling factor [Brucella melitensis M28]
 gi|326554029|gb|ADZ88668.1| transcription-repair coupling factor [Brucella melitensis M5-90]
          Length = 1170

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 230/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++Q 
Sbjct: 589 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIEAVADDLAQG 644

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++          I 
Sbjct: 645 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPIN 704

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV
Sbjct: 705 VAHASRLVGAKELAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGV 761

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 762 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 821

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M
Sbjct: 822 VIRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQM 870

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 871 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 930

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 931 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 988

Query: 639 SG 640
           SG
Sbjct: 989 SG 990


>gi|254560353|ref|YP_003067448.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens DM4]
 gi|254267631|emb|CAX23477.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           DM4]
          Length = 1111

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 152/453 (33%), Positives = 241/453 (53%), Gaps = 16/453 (3%)

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIK 282
           AR RL  +  LA     +L   Q ++E   P I    +  ++      +  T  Q  A++
Sbjct: 526 ARRRLEAEATLAKAARAMLKAAQERREAHAPQIVPPEREMERFAAGFGYPLTGDQAGAVE 585

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           + L D++++  M R++ GDVG GKT VAL A AAA+ AG Q  +MAP  +L +QH E  +
Sbjct: 586 ETLADLAREMPMDRLVCGDVGFGKTEVALRAAAAAIFAGRQIAVMAPTTVLVRQHVETFR 645

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +      I V  ++  +  A  ++  + +A G   +++GT AL    + ++ L L I+DE
Sbjct: 646 RRFARFCIEVAHLSRLVSPAEAKRVKQGLADGSVRLVVGTQALAGRGVSFHDLGLAIIDE 705

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + RFG + +  L + A   H+L ++ATPIPRTL    +G   +S I   PA R+PI+TVI
Sbjct: 706 EQRFGAKTKASLRKAAGDAHILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQPIRTVI 765

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
            P      +   L+     G +++ +CP+IE     +   + +R ++L       +   H
Sbjct: 766 APFEE-STLAAALRREHRRGGQSFVVCPRIE-----DIAPMAKRLHALVPGL--DVVTAH 817

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G M   + +  M  F +G   +L+AT++IE G+DV  A+ +++ +AE FGLAQLHQLRGR
Sbjct: 818 GEMKPAEMDDAMVRFADGNGDVLLATSIIESGLDVPRANTMLVWDAERFGLAQLHQLRGR 877

Query: 583 VGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIK 637
           VGRG+      L  HP  PLS ++  RL  L+  +    GF I+  DL  R  G+++G  
Sbjct: 878 VGRGQRRGVVYLFGHPDKPLSHSTEKRLRTLEALDRLGAGFAISARDLDLRGAGDLVGDD 937

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           QSG  K +     L+  LL++A + AK    +D
Sbjct: 938 QSGHVKLVGLG--LYQHLLQLALRAAKGEAAED 968


>gi|225629075|ref|ZP_03787108.1| transcription-repair coupling factor [Brucella ceti str. Cudo]
 gi|254705928|ref|ZP_05167756.1| transcription-repair coupling factor [Brucella pinnipedialis
           M163/99/10]
 gi|254711152|ref|ZP_05172963.1| transcription-repair coupling factor [Brucella pinnipedialis B2/94]
 gi|254712390|ref|ZP_05174201.1| transcription-repair coupling factor [Brucella ceti M644/93/1]
 gi|254715462|ref|ZP_05177273.1| transcription-repair coupling factor [Brucella ceti M13/05/1]
 gi|256029533|ref|ZP_05443147.1| transcription-repair coupling factor [Brucella pinnipedialis
           M292/94/1]
 gi|260167377|ref|ZP_05754188.1| transcription-repair coupling factor [Brucella sp. F5/99]
 gi|261217195|ref|ZP_05931476.1| transcription-repair coupling factor [Brucella ceti M13/05/1]
 gi|261313356|ref|ZP_05952553.1| transcription-repair coupling factor [Brucella pinnipedialis
           M163/99/10]
 gi|261318744|ref|ZP_05957941.1| transcription-repair coupling factor [Brucella pinnipedialis B2/94]
 gi|261320066|ref|ZP_05959263.1| transcription-repair coupling factor [Brucella ceti M644/93/1]
 gi|261756785|ref|ZP_06000494.1| transcription repair coupling factor [Brucella sp. F5/99]
 gi|265986542|ref|ZP_06099099.1| transcription-repair coupling factor [Brucella pinnipedialis
           M292/94/1]
 gi|225615571|gb|EEH12620.1| transcription-repair coupling factor [Brucella ceti str. Cudo]
 gi|260922284|gb|EEX88852.1| transcription-repair coupling factor [Brucella ceti M13/05/1]
 gi|261292756|gb|EEX96252.1| transcription-repair coupling factor [Brucella ceti M644/93/1]
 gi|261297967|gb|EEY01464.1| transcription-repair coupling factor [Brucella pinnipedialis B2/94]
 gi|261302382|gb|EEY05879.1| transcription-repair coupling factor [Brucella pinnipedialis
           M163/99/10]
 gi|261736769|gb|EEY24765.1| transcription repair coupling factor [Brucella sp. F5/99]
 gi|264658739|gb|EEZ29000.1| transcription-repair coupling factor [Brucella pinnipedialis
           M292/94/1]
          Length = 1170

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 230/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++Q 
Sbjct: 589 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIEAVADDLAQG 644

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++          I 
Sbjct: 645 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPIN 704

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV
Sbjct: 705 VAHASRLVGAKELAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGV 761

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 762 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 821

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M
Sbjct: 822 VIRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQM 870

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 871 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 930

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 931 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 988

Query: 639 SG 640
           SG
Sbjct: 989 SG 990


>gi|188583862|ref|YP_001927307.1| transcription-repair coupling factor [Methylobacterium populi BJ001]
 gi|179347360|gb|ACB82772.1| transcription-repair coupling factor [Methylobacterium populi BJ001]
          Length = 1200

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/398 (34%), Positives = 217/398 (54%), Gaps = 23/398 (5%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T+ Q +AI  +L D++    M R++ GDVG GKT VAL A  AA  +G Q  ++ P 
Sbjct: 648  FQETEDQANAIDAVLDDLNAGRPMDRLVCGDVGFGKTEVALRAAFAAAISGKQVAVVVPT 707

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QHY    +  +   I V  ++  +    +R+    +A G+  I++GTHAL   ++
Sbjct: 708  TLLARQHYRTFAERFKGLPINVAQLSRFVSAGDQRQTRAGLAEGKVDIVVGTHALLAKNV 767

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L L+IVDE+  FGV  + +L       HVL ++ATPIPRTL L   G  ++S I  
Sbjct: 768  AFKDLGLIIVDEEQHFGVAHKERLKALQADVHVLTLSATPIPRTLQLAMTGVRELSIIAT 827

Query: 451  KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             P  R  ++T + P +   I E + R +     G +A+++ P+IE+  E      V+RF 
Sbjct: 828  PPVDRLAVRTFVTPFDPLLIREALLRERY---RGGQAFYVVPRIEDLAE------VKRFL 878

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
               E    ++A+ HG+M+    E VM +F  G   +L++TT++E G+D+  A+ +I+  A
Sbjct: 879  D-QEMPEVTVAVAHGQMAAGQLEDVMTAFYEGKYDVLLSTTIVESGLDIPTANTLIVHRA 937

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIA 621
            + FGLA L+QLRGRVGR +  +    L+  P    L+  +  RL VL++ +    GF +A
Sbjct: 938  DMFGLAALYQLRGRVGRSK--ARAYALFTTPANRQLTAQAEQRLKVLQSLDTLGAGFQLA 995

Query: 622  EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
              DL  R  G +LG  QSG  K +    EL+  +LE A
Sbjct: 996  SHDLDIRGAGNLLGDAQSGHIKEV--GYELYQQMLEDA 1031


>gi|254695633|ref|ZP_05157461.1| transcription-repair coupling factor [Brucella abortus bv. 3 str.
           Tulya]
 gi|254699816|ref|ZP_05161644.1| transcription-repair coupling factor [Brucella suis bv. 5 str. 513]
 gi|261216031|ref|ZP_05930312.1| transcription-repair coupling factor [Brucella abortus bv. 3 str.
           Tulya]
 gi|261750288|ref|ZP_05993997.1| transcription-repair coupling factor [Brucella suis bv. 5 str. 513]
 gi|260917638|gb|EEX84499.1| transcription-repair coupling factor [Brucella abortus bv. 3 str.
           Tulya]
 gi|261740041|gb|EEY27967.1| transcription-repair coupling factor [Brucella suis bv. 5 str. 513]
          Length = 1170

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 230/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++Q 
Sbjct: 589 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIEAVADDLAQG 644

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++          I 
Sbjct: 645 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPIN 704

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV
Sbjct: 705 VAHASRLVGAKELAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGV 761

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 762 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 821

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M
Sbjct: 822 VIRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQM 870

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 871 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 930

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 931 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 988

Query: 639 SG 640
           SG
Sbjct: 989 SG 990


>gi|256059228|ref|ZP_05449434.1| transcription-repair coupling factor [Brucella neotomae 5K33]
 gi|261323178|ref|ZP_05962375.1| transcription-repair coupling factor [Brucella neotomae 5K33]
 gi|261299158|gb|EEY02655.1| transcription-repair coupling factor [Brucella neotomae 5K33]
          Length = 1170

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 230/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++Q 
Sbjct: 589 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIEAVADDLAQG 644

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++          I 
Sbjct: 645 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPIN 704

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV
Sbjct: 705 VAHASRLVGAKELAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGV 761

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 762 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 821

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M
Sbjct: 822 VIRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQM 870

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 871 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 930

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 931 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 988

Query: 639 SG 640
           SG
Sbjct: 989 SG 990


>gi|261337278|ref|ZP_05965162.1| transcription-repair coupling factor [Bifidobacterium gallicum DSM
            20093]
 gi|270277644|gb|EFA23498.1| transcription-repair coupling factor [Bifidobacterium gallicum DSM
            20093]
          Length = 1205

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 134/428 (31%), Positives = 225/428 (52%), Gaps = 17/428 (3%)

Query: 219  EWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W +  AR +    E+    I L   R+  K   G   + +    +++    P+  T  Q
Sbjct: 594  DWAATKARAKKHVHEIAENLIKLYAARQSSK---GYAFSKDTPWQKELEDAFPYQETADQ 650

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I D+  DM ++  M R++ GDVG GKT +A+ A   AV+   Q  ++ P  +L QQH
Sbjct: 651  LTTIDDVKSDMEKEIPMDRLICGDVGFGKTEIAVRAAFKAVQDSKQVAVLVPTTLLVQQH 710

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
             E   +  +   + V  ++         +  + +A G   ++IGTH L   SI++  L L
Sbjct: 711  LETFSERFEGFPVTVRAMSRFESTKQINETKKGLADGTVDVVIGTHKLLNPSIKFKDLGL 770

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 771  VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 830

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T +       +V   ++  L  G + +++  ++E+  ++  + V E          + 
Sbjct: 831  VLTYVGAYEDA-QVTAAIRRELMRGGQVFFLHNRVEDIDKTA-QHVAELVPE------AR 882

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I I HG+M     + V+  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH
Sbjct: 883  IGIAHGKMGRKQLDQVIQDFWHRDIDVLVTTTIIETGLDISNANTLIVDHADRFGLSQLH 942

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRL-SVLKNTE--DGFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY P  P+++ S+ RL ++ +NT    GF +A +DL+ R  G 
Sbjct: 943  QLRGRVGRGHERAYAYFLYDPTKPMTETSHERLVTIAQNTALGSGFDVAMKDLELRGTGN 1002

Query: 633  ILGIKQSG 640
            +LG +QSG
Sbjct: 1003 LLGDEQSG 1010


>gi|206603476|gb|EDZ39956.1| Transcription-repair coupling factor [Leptospirillum sp. Group II
           '5-way CG']
          Length = 1154

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 130/382 (34%), Positives = 214/382 (56%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  QE A + + +DM     M R++ GDVG GKT +A+ A   AV  G Q  ++
Sbjct: 600 SFPYDLTPDQEDAWRAVCEDMEAPTPMDRLILGDVGFGKTEIAMRAAFKAVADGYQVALL 659

Query: 328 APIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P  +LA+QHYE F+ +++     I  I +  + QA  R   ++++ G+  I+IGT AL 
Sbjct: 660 VPTTLLAKQHYESFLDRFSGFPVRICHI-SRMVSQAEIRATRKKLSLGEIDILIGTTALI 718

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
                +  L L+I+DE+ RFGV Q+ KL  + T+  VL ++ATPIPRTL ++  G   IS
Sbjct: 719 SKETSFRNLGLLIIDEEQRFGVGQKEKLKSRYTSVDVLTLSATPIPRTLQMSLSGLRGIS 778

Query: 447 KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            I   P GRKPI+T I+  +  RI E I+R    L+   + ++I  +++        ++ 
Sbjct: 779 FIMTPPPGRKPIRTAILTFDRHRIHEAIDR---ELARDGQVFFIHNRVQ--------TIS 827

Query: 505 ERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
              + L + F    I + HG+M D   E VM+ F     ++L++T ++E G+D+  A+ I
Sbjct: 828 RMVHYLAKLFPEVPIGMAHGQMEDSRMEEVMEKFIQRHYRILVSTAIVESGLDIPAANTI 887

Query: 564 IIENAEHFGLAQLHQLRGRVGR-GEEISSCILL-YHPPLSKNSYTRLSVLKNTE---DGF 618
           I+  A+ FG+++L+Q+RGRVGR G++  +  L+     L+  +  RL  L++      G+
Sbjct: 888 IVNRADMFGISELYQIRGRVGRSGQQAYAYFLIPSESGLTDTARKRLKTLQDNTSLGSGY 947

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  D++ R  G +LG +Q+G
Sbjct: 948 QIAMRDMEIRGAGSLLGHQQTG 969


>gi|284926314|gb|ADC28666.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 978

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/418 (32%), Positives = 228/418 (54%), Gaps = 29/418 (6%)

Query: 234 LAGQIALLLMRKQF--KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +A +I ++  ++     K+I + +N +       + +  F  T  QE A  +ILQD    
Sbjct: 431 IASKIVIMAAKRSLVQAKKITVDLNRQADF----ITSAGFIYTSDQEKACHEILQDFQSG 486

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R+L GDVG GKT VA+ A+   V++G  A + AP  +L+ QHY+ +KK      I 
Sbjct: 487 KVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIK 546

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V  +      A +++ L+ +   +A +++GTHAL   S++   L LVI+DE+H+FGV+Q+
Sbjct: 547 VFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALL--SVECENLALVIIDEEHKFGVKQK 604

Query: 412 LKLTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467
            KL +     H+L M+ATPIPR+L   L+S+    +  +   P  R  ++T +   +   
Sbjct: 605 EKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSV--LQTPPEDRMDVRTFVKENDDAL 662

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           + E I R    L  G + ++I   I   ++   + ++E F++L       I I+H ++  
Sbjct: 663 LKEAIAR---ELRRGGQIFYIHNHIASIEQCK-KHLLELFSTLR------ILILHSKIDA 712

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +E  M  F+N    LL++T+++E GID+ +A+ II+E ++ FG+A LHQLRGRVGR +
Sbjct: 713 KMQEEEMLKFENKEYDLLLSTSIVESGIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSD 772

Query: 588 EISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           +   C  L      ++K++  RL  L++      G ++A  DL+ R  G +LG+ QSG
Sbjct: 773 KQGYCYFLIEDKNAITKDALKRLVSLESNSFLGAGSILAYHDLEIRGGGNLLGVDQSG 830


>gi|256111504|ref|ZP_05452518.1| transcription-repair coupling factor [Brucella melitensis bv. 3
           str. Ether]
 gi|265993002|ref|ZP_06105559.1| transcription-repair coupling factor [Brucella melitensis bv. 3
           str. Ether]
 gi|262763872|gb|EEZ09904.1| transcription-repair coupling factor [Brucella melitensis bv. 3
           str. Ether]
          Length = 1170

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 230/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++Q 
Sbjct: 589 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIEAVADDLAQG 644

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++          I 
Sbjct: 645 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPIN 704

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV
Sbjct: 705 VAHASRLVGAKELAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGV 761

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 762 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 821

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M
Sbjct: 822 VIRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQM 870

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 871 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 930

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 931 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 988

Query: 639 SG 640
           SG
Sbjct: 989 SG 990


>gi|283954244|ref|ZP_06371768.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           414]
 gi|283794262|gb|EFC33007.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           414]
          Length = 607

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 150/401 (37%), Positives = 222/401 (55%), Gaps = 23/401 (5%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+N+PFS T+ Q +A+KDI +D+       R++ GDVG GKTLV L   AA +    QA+
Sbjct: 219 LKNLPFSLTEDQHNALKDIEKDLHSNEAKRRVIMGDVGCGKTLVLL--GAALMVYPKQAI 276

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA Q YE  KK+  +   I+ I  G      + K LE+    +A++IIGTHAL
Sbjct: 277 LMAPTSILAYQLYEEAKKFLPDFMNILLIKGGK-----KEKNLEQNIQ-KANLIIGTHAL 330

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               +Q +  +LV++DEQHRFG  QR K   L +K  APH +  +ATPIPRTL +     
Sbjct: 331 --THLQSHNAVLVMIDEQHRFGSAQREKIHSLNKKEFAPHFIQFSATPIPRTLSMIQSEL 388

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           ++ S I + P  +K I T  I      ++ E++K  +++  +   I P +       + S
Sbjct: 389 LNFSFIKQMPF-KKDITTYCIQNEGFVKLNEKIKEEIAKNHQIIIIYPLVNASDSIPYLS 447

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +       H+   + + HG+  D  K+ +++ F++    +L++TTV+EVGI +   S+
Sbjct: 448 LEQAREYWESHY-EKVFVTHGK--DKQKDEILERFRD-EGNILLSTTVVEVGISLPRLSM 503

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I  AE  GLA LHQLRGRVGR    S+C L  +  L K   +RL    +T DGF IAE
Sbjct: 504 IVIVGAERLGLATLHQLRGRVGRVGLKSTCYL--YTKL-KEIPSRLKEFASTLDGFKIAE 560

Query: 623 EDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
            DLK R  G++L G  Q G  +F        + +LE  +KD
Sbjct: 561 LDLKNRLSGDLLDGFIQHG-NEFKFFDFSKDEEILEEVKKD 600


>gi|269118729|ref|YP_003306906.1| DEAD/DEAH box helicase [Sebaldella termitidis ATCC 33386]
 gi|268612607|gb|ACZ06975.1| DEAD/DEAH box helicase domain protein [Sebaldella termitidis ATCC
           33386]
          Length = 984

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/375 (36%), Positives = 202/375 (53%), Gaps = 24/375 (6%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q+ AI+D+  DM     M R++ GDVG GKT VA+ A   A+  G Q  ++ P  ILA+
Sbjct: 470 DQKRAIEDVKNDMESDKIMDRVICGDVGYGKTEVAMRAAFKAIVDGKQVALLTPTTILAE 529

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHYE  K+      + +E ++        R+ L ++  G   ++IGTH +  + +++  L
Sbjct: 530 QHYERFKQRFSKYPMTIENLSRLSDTKKVREILHKLETGVLDMVIGTHRILSEDVKFKNL 589

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L+I+DE+ +FGV+ + KL +K     +L +TATPIPRTL LT LG  DIS I   P  R
Sbjct: 590 NLLIIDEEQKFGVKSKEKLKKKREKIDILTLTATPIPRTLNLTLLGIRDISVIETPPVNR 649

Query: 456 KPIKTVI----IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNS 509
            PI+T+I    + I R       LK +  +G + ++I   ++  E K    +S +  F  
Sbjct: 650 VPIETIIEEQGLDIKRA-----VLKELARDG-QIFYIYNNVKFMEDKMKELKSQLPEF-- 701

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                   I  IHG++     +  +  F+NG   +L+ATT+IE GID+ + + I IEN +
Sbjct: 702 ------VKIDYIHGQLPPKLIKERIKKFENGEYDILMATTIIENGIDISNVNTIFIENFD 755

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED----GFLIAEEDL 625
             GL+Q++QLRGRVGR    S C L+     +K S  R     N ED    G  ++ EDL
Sbjct: 756 KLGLSQVYQLRGRVGRSNRQSYCYLIKSLISTKKSKKREETFDNIEDATASGMQLSLEDL 815

Query: 626 KQRKEGEILGIKQSG 640
           K R  GEILG KQ G
Sbjct: 816 KIRGAGEILGEKQHG 830


>gi|225012067|ref|ZP_03702504.1| transcription-repair coupling factor [Flavobacteria bacterium
           MS024-2A]
 gi|225003622|gb|EEG41595.1| transcription-repair coupling factor [Flavobacteria bacterium
           MS024-2A]
          Length = 1064

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 136/437 (31%), Positives = 226/437 (51%), Gaps = 20/437 (4%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +++IG   + +  +  ++  +  +  T  QE   + I  DM  +  M R++ GDVG GKT
Sbjct: 473 RQKIGFAFDPDSYLQWELEASFMYEDTPDQEKTTQAIKADMESQQPMDRLVCGDVGFGKT 532

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A +   Q V++ P  ILA QH++      +   + V+ +        + + 
Sbjct: 533 EVAIRAAFKAADNSKQVVVLVPTTILAFQHFKTFSARLKELPVRVDYLNRFRSTKDKNQI 592

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L+ ++ G+  I+IGTH L   ++ +  L L+IVDE+ +FGV  + K+        VL +T
Sbjct: 593 LQDLSEGKIDILIGTHQLVNKNVVFKDLGLLIVDEEQKFGVAVKEKIRSLKENIDVLTLT 652

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKA 485
           ATPIPRTL  + +   D+S I   P  R PI++ ++   R  E + R  ++  L  G + 
Sbjct: 653 ATPIPRTLQFSLMAARDLSVIATPPPNRFPIESDVV---RFSETLIRDGIMYELQRGGQV 709

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++I  ++E   E     +V+R         + IAI HG+M     E  + SF  G   +L
Sbjct: 710 FFIHNRVENIAE--ISGLVQRLVP-----DARIAIGHGQMEGTKLEKTLLSFMQGDFDIL 762

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKN 603
           IATT+IE G+DV +A+ I I NA +FGL+ LHQ+RGRVGR  + + C  +   H  +S +
Sbjct: 763 IATTIIENGLDVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPHSAMSSD 822

Query: 604 SYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLE 657
           +  R+  ++       G  IA +DL+ R  G++LG +QSG      F   Q  L +++ E
Sbjct: 823 AQKRIKTIEQFSAIGSGIQIAMKDLEIRGAGDLLGGEQSGFINEMGFETYQKILQEAIDE 882

Query: 658 IARKDAKHILTQDPDLT 674
           +   + K +  Q+ + T
Sbjct: 883 LKENEFKELYQQEANDT 899


>gi|91776101|ref|YP_545857.1| transcription-repair coupling factor [Methylobacillus flagellatus
           KT]
 gi|91710088|gb|ABE50016.1| transcription-repair coupling factor [Methylobacillus flagellatus
           KT]
          Length = 1134

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 150/430 (34%), Positives = 218/430 (50%), Gaps = 29/430 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q +AI+ ++ DM     M R++ GDVG GKT VAL A   AV  G Q  ++
Sbjct: 588 GFPFEETADQLAAIEAVISDMQSGRPMDRLVCGDVGFGKTEVALRAAFVAVMGGRQVAVL 647

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +LA+QH+        +  + +  I+       + +AL+ +  G   I+IGTH L Q
Sbjct: 648 VPTTLLAEQHFHNFSDRFADWPVKITEISRFRTAKEQAQALKGLEDGSIDIVIGTHRLIQ 707

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L LVI+DE+HRFGV+Q+ +L        VL +TATPIPRTL +   G  + S 
Sbjct: 708 KDVKFKNLGLVILDEEHRFGVRQKEQLKAMRAEVDVLTLTATPIPRTLSMAMEGLREFSV 767

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEE---KKESNFRS 502
           I   P  R  IKT         E I R   +     G + Y++  +++     KE   + 
Sbjct: 768 IATPPQKRLAIKTF---ATHYSEGIIREAAMREFKRGGQVYFLHNEVDTIFVMKEKLEKI 824

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E          + I I HG++ + + E VM  F      LL+ TT+IE GIDV  A+ 
Sbjct: 825 LPE----------ARIGIAHGQLRERELEHVMRDFYQQRFNLLLCTTIIETGIDVPTANT 874

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           II+  A+ FGLAQLHQLRGRVGR    +   LL  P   ++  +  RL  ++  ED   G
Sbjct: 875 IIMNRADMFGLAQLHQLRGRVGRSHHQAYAYLLTDPDRNITPQAQKRLDAIQLLEDLGAG 934

Query: 618 FLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           F +A  DL+ R  GE+LG  QSG M +       L+  +L  A K  K    ++PDL++ 
Sbjct: 935 FHLAMHDLEIRGAGELLGDSQSGEMQEIGFT---LYSEMLSHAVKQLK--AGKEPDLSAP 989

Query: 677 RGQSIRILLY 686
            G +  I L+
Sbjct: 990 LGVTTEINLH 999


>gi|294853624|ref|ZP_06794296.1| transcription-repair coupling factor [Brucella sp. NVSL 07-0026]
 gi|294819279|gb|EFG36279.1| transcription-repair coupling factor [Brucella sp. NVSL 07-0026]
          Length = 1170

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 230/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++Q 
Sbjct: 589 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIEAVADDLAQG 644

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++          I 
Sbjct: 645 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPIN 704

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV
Sbjct: 705 VAHASRLVGAKELAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGV 761

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 762 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 821

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M
Sbjct: 822 VIRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQM 870

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 871 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 930

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 931 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 988

Query: 639 SG 640
           SG
Sbjct: 989 SG 990


>gi|283954648|ref|ZP_06372166.1| LOW QUALITY PROTEIN: transcription-repair coupling factor
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283793840|gb|EFC32591.1| LOW QUALITY PROTEIN: transcription-repair coupling factor
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 640

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 133/416 (31%), Positives = 230/416 (55%), Gaps = 25/416 (6%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A +I ++  ++   +   I +++  +     + N  F  T  Q+ A  +ILQD      
Sbjct: 93  IASEIVIMAAKRSLVQAKKIKVDLSKQ--ADFIANAGFIYTSDQDKACYEILQDFQSGKV 150

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+L GDVG GKT VA+ A+   VE+G  A + AP  +L+ QHY+ +KK   +  I V 
Sbjct: 151 MDRLLSGDVGFGKTEVAMNAIYPVVESGFCAFLFAPTTLLSHQHYKTLKKRFTSFGIEVF 210

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            +      A +++ L+ +   +A +++GTHAL   S++   L L I+DE+H+FGV+ + K
Sbjct: 211 KLDRFTSSAEKKQVLQNLKENKACVVVGTHALL--SVECENLALAIIDEEHKFGVKHKEK 268

Query: 414 LTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           L +     H+L M+ATPIPR+L   L+S+    + +I   P  R  ++T    +   D+ 
Sbjct: 269 LKEITQNSHILSMSATPIPRSLNQALSSIKSYSVLQIP--PEDRMDVRTF---VKENDDA 323

Query: 472 IERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           + +  +V  L  G + ++I   I   ++   + ++E F++L       I I+H ++S   
Sbjct: 324 LLKEAIVRELRRGGQIFYIHNHIASIEQCK-KHLLELFSTLR------ILILHSKISAKI 376

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E  M  F+N    LL++T+++E GID+ +A+ II+E ++ FG+A LHQLRGRVGR ++ 
Sbjct: 377 QEEEMLKFENKEYDLLLSTSIVESGIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQ 436

Query: 590 SSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           + C  L      ++K++  RL  L++      G ++A  DL+ R  G +LG+ QSG
Sbjct: 437 AYCYFLIEDKNTITKDALKRLVSLESNSFLGAGSVLAYHDLEIRGGGNLLGVDQSG 492


>gi|83269545|ref|YP_418836.1| transcription repair coupling factor [Brucella melitensis biovar
           Abortus 2308]
 gi|82939819|emb|CAJ12827.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
           motif A (P-loop):Haem peroxidase:Transcription-repair
           coupli [Brucella melitensis biovar Abortus 2308]
          Length = 1122

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 230/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++Q 
Sbjct: 541 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIEAVADDLAQG 596

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++          I 
Sbjct: 597 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPIN 656

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV
Sbjct: 657 VAHASRLVGAKGLAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGV 713

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 714 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 773

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M
Sbjct: 774 VIRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQM 822

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 823 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 882

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 883 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 940

Query: 639 SG 640
           SG
Sbjct: 941 SG 942


>gi|283956482|ref|ZP_06373962.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792202|gb|EFC30991.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 978

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/418 (32%), Positives = 228/418 (54%), Gaps = 29/418 (6%)

Query: 234 LAGQIALLLMRKQF--KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +A +I ++  ++     K+I + +N +       + +  F  T  QE A  +ILQD    
Sbjct: 431 IASEIVIMAAKRSLVQAKKITVDLNRQADF----ITSAGFIYTSDQEKACHEILQDFQSG 486

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R+L GDVG GKT VA+ A+   V++G  A + AP  +L+ QHY+ +KK      I 
Sbjct: 487 KVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIK 546

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V  +      A +++ L+ +   +A +++GTHAL   S++   L LVI+DE+H+FGV+Q+
Sbjct: 547 VFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALL--SVECENLALVIIDEEHKFGVKQK 604

Query: 412 LKLTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467
            KL +     H+L M+ATPIPR+L   L+S+    +  +   P  R  ++T +   +   
Sbjct: 605 EKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSV--LQTPPEDRMDVRTFVKENDDAL 662

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           + E I R    L  G + ++I   I   ++   + ++E F++L       I I+H ++  
Sbjct: 663 LKEAIAR---ELRRGGQIFYIHNHIASIEQCK-KHLLELFSTLR------ILILHSKIDA 712

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +E  M  F+N    LL++T+++E GID+ +A+ II+E ++ FG+A LHQLRGRVGR +
Sbjct: 713 KVQEEEMLKFENKEYDLLLSTSIVESGIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSD 772

Query: 588 EISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           +   C  L      ++K++  RL  L++      G ++A  DL+ R  G +LG+ QSG
Sbjct: 773 KQGYCYFLIEDKNAITKDALKRLVSLESNSFLGAGSVLAYHDLEIRGGGNLLGVDQSG 830


>gi|92117582|ref|YP_577311.1| transcription-repair coupling factor [Nitrobacter hamburgensis X14]
 gi|91800476|gb|ABE62851.1| transcription-repair coupling factor [Nitrobacter hamburgensis X14]
          Length = 1173

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 142/435 (32%), Positives = 230/435 (52%), Gaps = 25/435 (5%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +AG++  +   +   +   +P  V+  +  +     P+  T+ Q  AI   L+D+     
Sbjct: 587  IAGELIKIAAARHLHEAPKMP--VQSGLYDEFCARFPYEETEDQLGAIHASLKDLESGRP 644

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA+QH     +  +   + V 
Sbjct: 645  MDRLICGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHARTFTERFRGFPVNVA 704

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
              +  +      +  + IA G   I++GTHAL   SI++  L L++VDE+  FGV  + +
Sbjct: 705  QASRLVSSKELAQVKKGIADGSVDIVVGTHALLGKSIKFRDLGLLVVDEEQHFGVSHKER 764

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEV 471
            L Q     HVL ++ATPIPRTL L   G  D+S I   P  R  ++T + P +   I E 
Sbjct: 765  LKQLRAQVHVLTLSATPIPRTLQLALTGVRDLSIIASPPVDRLAVRTFVAPHDPLMIREA 824

Query: 472  IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
            + R +     G +A+++ P+I++  E      V+ F  L +H     +A+ HG+M+    
Sbjct: 825  LLRERY---RGGQAFYVVPRIDDLAE------VKDF--LDKHVPEMKVAVAHGQMAPTVI 873

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E +M +F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR  ++ 
Sbjct: 874  EDIMSAFYDGKYDVLLSTTIVESGLDIPSANTLIVHRADMFGLAQLYQLRGRVGR-SKLR 932

Query: 591  SCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKF 644
            +  L   P    ++  +  RL VL++ E    GF +A  DL  R  G +LG +QSG  + 
Sbjct: 933  AYALFTLPSTHKITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIRE 992

Query: 645  LIAQPELHDSLLEIA 659
            +    EL+ S+LE A
Sbjct: 993  V--GFELYQSMLEEA 1005


>gi|153951893|ref|YP_001397800.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939339|gb|ABS44080.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 978

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 212/379 (55%), Gaps = 23/379 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q+ A  +ILQD      M R+L GDVG GKT VA+ A+   V++G  A + AP 
Sbjct: 466 FIYTSDQDKACHEILQDFQNGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPT 525

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L+ QHY+ +KK      I V  +      A +++ L+ +   +A +++GTHAL   S+
Sbjct: 526 TLLSHQHYKILKKRFDPFGIKVFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALL--SV 583

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKI 448
           +   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR+L   L+S+    +  +
Sbjct: 584 ECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSV--L 641

Query: 449 TEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
              P  R  ++T +      D+V+  E +   L  G + ++I   I   ++   + ++E 
Sbjct: 642 QTPPEDRMDVRTFV---KENDDVLLKEAIARELRRGGQIFYIHNHIASIEQCK-KHLLEL 697

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F++L       I I+H ++    +E  M  F+N    LL++T+++E GID+ +A+ II+E
Sbjct: 698 FSTLR------ILILHSKIDAKVQEEEMLKFENKEYDLLLSTSIVESGIDLPNANTIIVE 751

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIA 621
            ++ FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L++      G ++A
Sbjct: 752 KSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSLESNSFLGAGSVLA 811

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G +LG+ QSG
Sbjct: 812 YHDLEIRGGGNLLGVDQSG 830


>gi|325676609|ref|ZP_08156287.1| transcription-repair coupling factor [Rhodococcus equi ATCC 33707]
 gi|325552787|gb|EGD22471.1| transcription-repair coupling factor [Rhodococcus equi ATCC 33707]
          Length = 1225

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 199/375 (53%), Gaps = 13/375 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q + I ++  DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P 
Sbjct: 653  FTETHDQLTVIDEVKADMEKPVPMDRVVIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPT 712

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LAQQH +   +   N  + V  ++     A  ++ + ++A G+  I++GTH L Q  +
Sbjct: 713  TLLAQQHLQTFSERMANFPVKVRGLSRFTDAAESKEIIAQLADGEIDIVVGTHRLLQTGV 772

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 773  RWKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILT 832

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R PI T +             + +L +G+  Y         + S+     +R   +
Sbjct: 833  PPEERHPILTYVGAYADKQVAAAIRRELLRDGQVFYV------HNRVSSIDKAAKRIREM 886

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + + + HG+M++   E  +  F      +L+ TT+IE G+D+ +A+ +I+E A+ 
Sbjct: 887  VPE--ARVVVAHGQMNEETLEKTVQGFWEREFDVLVCTTIIETGLDISNANTLIVERADS 944

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
             GL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    D   G  +A +DL
Sbjct: 945  LGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDL 1004

Query: 626  KQRKEGEILGIKQSG 640
            + R  G +LG +QSG
Sbjct: 1005 EIRGAGNVLGAEQSG 1019


>gi|157803549|ref|YP_001492098.1| hypothetical protein A1E_01840 [Rickettsia canadensis str. McKiel]
 gi|157784812|gb|ABV73313.1| hypothetical protein A1E_01840 [Rickettsia canadensis str. McKiel]
          Length = 1119

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 146/443 (32%), Positives = 237/443 (53%), Gaps = 43/443 (9%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           +IAL L++   ++++    ++E  + +  K   + PFS T+ Q +AI DI +D+     M
Sbjct: 538 EIALHLIQIAAQRKLNTNASIEFDLEEYDKFCAHFPFSETEDQLTAINDIREDLRSGMLM 597

Query: 295 LRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIMAPIGILAQQHY----EFIKKYTQ 346
            R++ GDVG GKT VA+ A+        E   Q  ++ P  IL  QH     E  K +  
Sbjct: 598 DRLICGDVGFGKTEVAMRAVFMVAKSLNEYSPQVAVVVPTTILCSQHVSRFTERFKGFGL 657

Query: 347 NTQIIVEIITGNMPQAHR--RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
           N + +  II+   P+  +  R  LE    G+ +IIIGTH+L   + +++ L L+I+DE+ 
Sbjct: 658 NIKQLSSIIS---PKEAKIIRSELES---GKINIIIGTHSLLHKNTKFFNLKLLIIDEEQ 711

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            FGV Q+  L Q  ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  ++T ++P
Sbjct: 712 HFGVSQKEFLKQLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMP 771

Query: 465 INRIDEVIERLKVVLSE---GKKAYWICPQIEE--KKESNFRSVVERFNSLHEHFTSSIA 519
            N    VI R   +L E   G +++++ P+I +    E   + +V            S  
Sbjct: 772 FN---PVIIR-DALLREHFRGGRSFYVVPRINDILDIEKQLKQIVPEL---------SYK 818

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I+H +M     + VM  F  G   +L++TT+IE GID+  A+ +II  A+  GL+QL+QL
Sbjct: 819 IVHRKMPYNKIDEVMSEFYAGKFDILVSTTIIESGIDIQGANTMIIHKADMLGLSQLYQL 878

Query: 580 RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEIL 634
           RGR+GRG+      L+   H  ++ +S  RL +++N+     GF IA  D+  R  G ++
Sbjct: 879 RGRIGRGKMRGYAYLIVESHKKMTAHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLI 938

Query: 635 GIKQSGMPKFLIAQPELHDSLLE 657
           G +QSG  + +    EL+  +LE
Sbjct: 939 GEEQSGQIREV--GTELYQEMLE 959


>gi|307244035|ref|ZP_07526154.1| transcription-repair coupling factor [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492559|gb|EFM64593.1| transcription-repair coupling factor [Peptostreptococcus stomatis
           DSM 17678]
          Length = 1134

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 131/380 (34%), Positives = 209/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q  AIKD  +DM     M R++ GDVG GKT VA+ A+  AV  G Q  ++ P
Sbjct: 614 PFQETDDQLKAIKDTKKDMESSKAMDRLICGDVGYGKTEVAIRAIFKAVMDGKQVAVLVP 673

Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             ILAQQHY  F++++ +   + VE+++       ++  ++    G   ++IGTH +   
Sbjct: 674 TTILAQQHYNTFVERF-EEYPMRVEVLSRFKTAKQQKDIIKDAKKGLVDVLIGTHRIVSK 732

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            I   KL LV+VDE+ RFGV+ +  L +      VL ++ATPIPRTL ++  G  D+S I
Sbjct: 733 DIDMPKLGLVVVDEEQRFGVRHKESLKKMKANVDVLTLSATPIPRTLHMSLSGIRDMSII 792

Query: 449 TEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
            E P  R P+ T +      D +I + ++  L+   + +++  ++E  ++  +  R +V 
Sbjct: 793 EEPPQERYPVMTYVTEAK--DSIIQDEIQRELTRAGQVFFVYNRVEGIDEMAARIRRLVP 850

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + + + HGRMS    E+ + SF +    +L+ TT+IE G+D+ +A+ +II
Sbjct: 851 ---------DAKVGVAHGRMSSNQLENTILSFLSKEFDVLVCTTIIETGMDIANANTMII 901

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLI 620
            +A+  GL+QL+QLRGRVGR        L+Y  +  LS+ +  RL  +K  TE   GF +
Sbjct: 902 YDADKMGLSQLYQLRGRVGRSTRQGYAYLMYERNKVLSEVAEKRLKAIKEFTEFGSGFKV 961

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  G++LG +Q G
Sbjct: 962 AMRDLEIRGAGDVLGAQQHG 981


>gi|317153444|ref|YP_004121492.1| transcription-repair coupling factor [Desulfovibrio aespoeensis
            Aspo-2]
 gi|316943695|gb|ADU62746.1| transcription-repair coupling factor [Desulfovibrio aespoeensis
            Aspo-2]
          Length = 1160

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/417 (32%), Positives = 217/417 (52%), Gaps = 24/417 (5%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q+ A++D+  DM +   M R++ GDVG GKT VAL A   A   G Q  ++ P 
Sbjct: 609  FEETPDQDKAVRDVFSDMEKPEPMDRLVCGDVGFGKTEVALRAAFRAALEGRQTALLCPT 668

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QHY+   +  +   + + +++  +P   ++  L+  + G+  I+IGTH +    +
Sbjct: 669  TVLAEQHYQTFSRRMEGFPVRIGLLSRFVPAKRQQAVLQAASRGELDILIGTHRILSKDV 728

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +   L L+I+DE+ RFGV+ + KL        VL +TATPIPRTL L+  G   +S I  
Sbjct: 729  ELPNLGLLILDEEQRFGVKHKEKLKHFRHNIDVLTLTATPIPRTLQLSLSGIRGLSVIET 788

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  RKP++T I   + +  +   L   L  G + YW+  ++     +    VVE    L
Sbjct: 789  PPLDRKPVETAITERDPV-ALKAALHRELERGGQVYWVYNRV-----NGLERVVEFVREL 842

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + + + HG+MS+   E  M  F +G   +L+ T ++E G+D  +A+ +I++ A+ 
Sbjct: 843  APD--ARVGMAHGQMSEKGLEDAMRGFWHGELDVLVCTAIVESGLDFPNANTLIVDQAQL 900

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDL 625
            FGL QL+QLRGRVGR +  +    +      LS+    RL ++ + +    GF IA EDL
Sbjct: 901  FGLGQLYQLRGRVGRSDRQAYAYFVVPSIDDLSEMVRKRLRIILDMDYLGAGFKIAMEDL 960

Query: 626  KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK------HILTQDPDLTSV 676
            + R  G ILG  QSG     IA+  L D  LE+  ++ +       I   DP+L  V
Sbjct: 961  RMRGAGNILGEAQSGQ----IAKVGL-DLFLEMLEEEVRRVRGETEIRASDPELNFV 1012


>gi|89054813|ref|YP_510264.1| transcription-repair coupling factor [Jannaschia sp. CCS1]
 gi|88864362|gb|ABD55239.1| transcription-repair coupling factor [Jannaschia sp. CCS1]
          Length = 1153

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 145/413 (35%), Positives = 225/413 (54%), Gaps = 29/413 (7%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G + +      P+  T  Q +AI D+L DM+    M R++ GDVG GKT VA+ A   A 
Sbjct: 591 GDMWEAFNARFPYEETDDQLTAIADVLDDMTLGRPMDRLVVGDVGFGKTEVAMRAAFVAA 650

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT---GNMPQAHRRKALERIAHGQ 375
            +G Q  ++AP  +LA+QH +  +   +   I V  ++   G       RK L   + G 
Sbjct: 651 ASGMQVAVVAPTTLLARQHAKTFQDRFRGFPITVRQLSRFVGTKEAEQTRKGL---SDGS 707

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             I+IGTHA+   S++   L L+I+DE+ RFGV  + +L +  +  HVL ++ATPIPRTL
Sbjct: 708 VDIVIGTHAILAKSVRIQNLGLMIIDEEQRFGVTHKERLKEMRSDVHVLTLSATPIPRTL 767

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQI 492
            ++  G  D+S I   P  R  I+T    ++  D V  R + +L E   G + +++ P+I
Sbjct: 768 QMSLSGVRDLSMIGTPPVDRLAIRTY---VSEFDTVTIR-EALLREHYRGGQTFYVVPRI 823

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAII-HGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           ++  E      +E F  L +H      I  HG+M+  + +  M +F +G   +L+ATT++
Sbjct: 824 QDLPE------IEEF--LKDHVPEVTYITAHGQMAAGELDDRMVAFYDGKYDVLLATTIV 875

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLS 609
           E GID+  A+ ++I  A+ FGLAQL+Q+RGRVGR +  +   L   P   L+ ++  RL 
Sbjct: 876 ESGIDIPTANTMVIHRADMFGLAQLYQIRGRVGRAKTRAYAYLTTKPRGKLTPSAEKRLR 935

Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           VL + +    GF IA +DL  R  G I+G +QSG  K +    EL+ S+LE A
Sbjct: 936 VLGSLDSLGAGFTIASQDLDIRGAGNIVGEEQSGHVKEV--GFELYQSMLEEA 986


>gi|157415346|ref|YP_001482602.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157386310|gb|ABV52625.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747987|gb|ADN91257.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni M1]
          Length = 978

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 211/379 (55%), Gaps = 23/379 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE A  +ILQD      M R+L GDVG GKT VA+ A+   V++G  A + AP 
Sbjct: 466 FIYTSDQEKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPT 525

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L+ QHY+ +KK      I V  +      A +++ L+ +   +A +++GTHAL   S+
Sbjct: 526 TLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALL--SV 583

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKI 448
           +   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR+L   L+S+    +  +
Sbjct: 584 ECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSV--L 641

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
              P  R  ++T +   +   + E I R    L  G + ++I   I   ++   + ++E 
Sbjct: 642 QTPPEDRMDVRTFVKENDDALLKEAIAR---ELRRGGQIFYIHNHIASIEQCK-KHLLEL 697

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F++L       I I+H ++    +E  M  F+N    LL++T+++E GID+ +A+ II+E
Sbjct: 698 FSTLR------ILILHSKIDAKVQEEEMLKFENKEYDLLLSTSIVESGIDLPNANTIIVE 751

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIA 621
            ++ FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L++      G ++A
Sbjct: 752 KSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSLESNSFLGAGSVLA 811

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G +LG+ QSG
Sbjct: 812 YHDLEIRGGGNLLGVDQSG 830


>gi|62317564|ref|YP_223417.1| transcription-repair coupling factor [Brucella abortus bv. 1 str.
           9-941]
 gi|189022818|ref|YP_001932559.1| Mfd, transcription-repair coupling factor [Brucella abortus S19]
 gi|237817111|ref|ZP_04596103.1| transcription-repair coupling factor [Brucella abortus str. 2308 A]
 gi|254691061|ref|ZP_05154315.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 6
           str. 870]
 gi|254698846|ref|ZP_05160674.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254732293|ref|ZP_05190871.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 4
           str. 292]
 gi|256256246|ref|ZP_05461782.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 9
           str. C68]
 gi|260544801|ref|ZP_05820622.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260756658|ref|ZP_05869006.1| transcription-repair coupling factor [Brucella abortus bv. 6 str.
           870]
 gi|260760089|ref|ZP_05872437.1| transcription-repair coupling factor [Brucella abortus bv. 4 str.
           292]
 gi|260763327|ref|ZP_05875659.1| transcription-repair coupling factor [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882475|ref|ZP_05894089.1| transcription-repair coupling factor [Brucella abortus bv. 9 str.
           C68]
 gi|297249604|ref|ZP_06933305.1| transcription-repair coupling factor [Brucella abortus bv. 5 str.
           B3196]
 gi|62197757|gb|AAX76056.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 1
           str. 9-941]
 gi|189021392|gb|ACD74113.1| Mfd, transcription-repair coupling factor [Brucella abortus S19]
 gi|237787924|gb|EEP62140.1| transcription-repair coupling factor [Brucella abortus str. 2308 A]
 gi|260098072|gb|EEW81946.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260670407|gb|EEX57347.1| transcription-repair coupling factor [Brucella abortus bv. 4 str.
           292]
 gi|260673748|gb|EEX60569.1| transcription-repair coupling factor [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676766|gb|EEX63587.1| transcription-repair coupling factor [Brucella abortus bv. 6 str.
           870]
 gi|260872003|gb|EEX79072.1| transcription-repair coupling factor [Brucella abortus bv. 9 str.
           C68]
 gi|297173473|gb|EFH32837.1| transcription-repair coupling factor [Brucella abortus bv. 5 str.
           B3196]
          Length = 1170

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 230/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++Q 
Sbjct: 589 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIEAVADDLAQG 644

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++          I 
Sbjct: 645 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPIN 704

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV
Sbjct: 705 VAHASRLVGAKGLAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGV 761

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 762 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 821

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M
Sbjct: 822 VIRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQM 870

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 871 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 930

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 931 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 988

Query: 639 SG 640
           SG
Sbjct: 989 SG 990


>gi|23500323|ref|NP_699763.1| transcription-repair coupling factor [Brucella suis 1330]
 gi|23463936|gb|AAN33768.1| transcription-repair coupling factor [Brucella suis 1330]
          Length = 1122

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 230/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++Q 
Sbjct: 541 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIEAVADDLAQG 596

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++          I 
Sbjct: 597 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPIN 656

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV
Sbjct: 657 VAHASRLVGAKELAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGV 713

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 714 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 773

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M
Sbjct: 774 VIRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQM 822

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 823 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 882

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 883 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 940

Query: 639 SG 640
           SG
Sbjct: 941 SG 942


>gi|319956410|ref|YP_004167673.1| ATP-dependent DNA helicase recg [Nitratifractor salsuginis DSM
           16511]
 gi|319418814|gb|ADV45924.1| ATP-dependent DNA helicase RecG [Nitratifractor salsuginis DSM
           16511]
          Length = 606

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 148/385 (38%), Positives = 207/385 (53%), Gaps = 30/385 (7%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR-ILQGDVGSGKTLVALIAMAAAVEAG 321
           +  +  +PF+ T  Q+  I +I +D+SQK +  R ++ GDVGSGKT+V L   AAAV AG
Sbjct: 217 EPFVETLPFTLTPDQQKVIAEIQKDLSQKEKAARRMIIGDVGSGKTMVIL---AAAVMAG 273

Query: 322 G-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G ++V+MAP  ILA+Q YE   KY      +  ++ GN    +R          +A  II
Sbjct: 274 GDRSVLMAPTSILARQLYEEACKYLPRELKVALVMQGNSEGDYR----------EADFII 323

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL----TQKATAPHVLLMTATPIPRTLV 436
           GTHAL        +  LV+VDEQHRFG +QR  L    +Q    PH L  +ATPIPRT  
Sbjct: 324 GTHALLYLE-DLPEAALVMVDEQHRFGTKQRALLEALVSQGERRPHYLQFSATPIPRTQA 382

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +     ID+S IT+ P   K I + +I  +   E++  ++  L E  +   + P +EE +
Sbjct: 383 MMESELIDVSLITQTPF-EKEIHSRVIGRSDFPELLRHIEKELEEDHQVLIVYPLVEESE 441

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           +  ++S+ E      E     + + HGR  D +KE ++  F+    K+L+ATTVIEVGI 
Sbjct: 442 QIPYQSIDE-ARGFWEKRYEGVYVTHGR--DRNKEEILLEFRE-QGKILLATTVIEVGIS 497

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + I+I  AE  GLA LHQLRGRVGR    S C L      +  S  RL     T+ 
Sbjct: 498 LPRLTTIVIVGAERLGLATLHQLRGRVGRNGLKSWCFLY----TNLQSSERLEKFCRTKS 553

Query: 617 GFLIAEEDLKQRKEGEIL-GIKQSG 640
           GF IA  DL  R  G+I+ G  QSG
Sbjct: 554 GFEIARLDLAYRDSGDIVDGTIQSG 578


>gi|326798757|ref|YP_004316576.1| transcription-repair coupling factor [Sphingobacterium sp. 21]
 gi|326549521|gb|ADZ77906.1| transcription-repair coupling factor [Sphingobacterium sp. 21]
          Length = 1112

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 130/408 (31%), Positives = 215/408 (52%), Gaps = 15/408 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q K + G   + +  +  ++  +  +  T  QE A  D+ +DM   + M R++ 
Sbjct: 527 LIKLYAQRKAQTGNAFSPDTYLQTELEASFIYEDTPDQEKATNDVKKDMEAPHPMDRLVC 586

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  ILA QH+    +  +     ++ I    
Sbjct: 587 GDVGFGKTEVAVRAAFKAVADSKQVAVLVPTTILALQHHRTFSERLKGFPCNIDYINRFK 646

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                +  L+R+A G+  I+IGTH L    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 647 TSKEIKDTLKRLAEGEIDIVIGTHRLVSKDVKFKDLGLLIIDEEQKFGVGVKEKLKQLRV 706

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L +TATPIPRTL  + +G  D+S I+  P  R+P++T +   N    + E +   +
Sbjct: 707 NVDTLTLTATPIPRTLHFSLMGARDLSIISTPPPNRQPVQTELHVFNE-KLIQEAVAYEI 765

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + G + ++I  ++++ ++    +++ +         +   + HG++     E VM  F N
Sbjct: 766 NRGGQVFFIHNRVQDLRQ--LGALITKLVP-----NARCGVAHGQLEGDALEDVMLKFIN 818

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+ATT+IE G+D+ +A+ III +A  FGL+ LHQ+RGRVGR  + + C LL  PP
Sbjct: 819 HEFDVLVATTIIEAGLDIPNANTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLL-SPP 877

Query: 600 LSK---NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           LS     +  RLS ++   +   GF +A  DL  R  G +LG +QSG 
Sbjct: 878 LSTLTPEARKRLSAIEEFSELGSGFNVAMRDLDIRGSGNLLGAEQSGF 925


>gi|325293164|ref|YP_004279028.1| transcription-repair coupling factor [Agrobacterium sp. H13-3]
 gi|325061017|gb|ADY64708.1| transcription-repair coupling factor [Agrobacterium sp. H13-3]
          Length = 1165

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 135/407 (33%), Positives = 219/407 (53%), Gaps = 36/407 (8%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q +AI  +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P
Sbjct: 618  PYDETEDQLNAIDAVRDDLGAGRPMDRLICGDVGFGKTEVALRAAFLAAMNGVQVAVVVP 677

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEI---ITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              +LA+QH+    +  +   I V+    + G+   A  +K    +A G+  I++GTHAL 
Sbjct: 678  TTLLARQHFRTFSERFRGLPIRVQQASRLVGSKELALTKK---EVADGKTDIVVGTHALL 734

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
               I +  L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S
Sbjct: 735  GAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELS 794

Query: 447  KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
             IT  P  R  ++T I P + +  + E L      G +++++CP++ +            
Sbjct: 795  LITTPPVDRMAVRTFISPFDPL-VIRETLMREHYRGGQSFYVCPRLAD------------ 841

Query: 507  FNSLHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
               +H    S      +A+ HG+M+  + E +M++F +G   +L++TT++E G+DV  A+
Sbjct: 842  LADIHAFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTAN 901

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT----RLSVLKNTED- 616
             +I+  A+ FGLAQL+QLRGRVGR +       L+  P++K   T    RL VL++ +  
Sbjct: 902  TLIVHRADMFGLAQLYQLRGRVGRSK--VRAFALFTLPVNKVLTTMAERRLKVLQSLDTL 959

Query: 617  --GFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEI 658
              GF +A  DL  R  G +LG +QSG  K   F + Q  L +++ E+
Sbjct: 960  GAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEV 1006


>gi|291458171|ref|ZP_06597561.1| transcription-repair coupling factor [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419254|gb|EFE92973.1| transcription-repair coupling factor [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 1125

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 202/378 (53%), Gaps = 15/378 (3%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q  AI++   DM  +  M R++ GDVG GKT VAL A    V+   Q   +A
Sbjct: 572 FPYEETADQLLAIEETKADMESRKIMDRLICGDVGYGKTEVALRAAFKCVQDSRQVAYLA 631

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILAQQ Y    +  +   + V ++      A  +K++  +  G+A I IGTH L   
Sbjct: 632 PTTILAQQIYNTFVERMKGFPVNVTLLCRFRSPAQIKKSIADLKAGRADIAIGTHRLLSR 691

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + +  L L++VDE+ RFGV  + ++        VL +TATPIPRTL ++  G  D+S +
Sbjct: 692 DVAFRDLGLLVVDEEQRFGVSHKERIKNLKKNVDVLTLTATPIPRTLHMSLAGIRDLSVL 751

Query: 449 TEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
            E P  R P++T ++  N  +E+I E ++  L+   + Y++  ++     +N   V  R 
Sbjct: 752 EEPPIDRSPVQTYVMEYN--EELIREAVRRELARSGQVYYVHNRV-----NNIEEVTRRV 804

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            +L     + +A  HG+M++   E +M  F NG   +L++TT+IE G+D+ +A+ +II +
Sbjct: 805 QALVPE--ARVAFAHGKMNEGQLEEIMLRFINGEIDVLVSTTIIETGLDIPNANTLIIND 862

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN---TEDGFLIAE 622
           A+  GL+QL+Q+RGRVGR    +    LY     LS+ S  RL  ++       G  IA 
Sbjct: 863 ADRMGLSQLYQIRGRVGRSSRTAYAFFLYRRGKLLSEESEKRLKAIREFTKLGSGIRIAM 922

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +Q G
Sbjct: 923 RDLEIRGAGNVLGAEQHG 940


>gi|260664822|ref|ZP_05865673.1| transcription-repair coupling factor [Lactobacillus jensenii
           SJ-7A-US]
 gi|260561305|gb|EEX27278.1| transcription-repair coupling factor [Lactobacillus jensenii
           SJ-7A-US]
          Length = 1161

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 137/441 (31%), Positives = 233/441 (52%), Gaps = 21/441 (4%)

Query: 210 HNPR--KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           H P+  K    +W    R   +  E +A  +  L   ++ +K  G   + +  + +    
Sbjct: 550 HRPKVNKLGGSQWAKTKRSVQSKVEDIADDLIKLYAARESEK--GFAFSKDNDLQKAFED 607

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             P+  T  Q  +  +I  DM +   M R+L GDVG GKT VA+ A   A++   Q   +
Sbjct: 608 AFPYVETPDQLRSSNEIKADMEKPKAMDRLLVGDVGFGKTEVAIRAAFKAIQDNKQVAFL 667

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQH++ I    ++  + V +++     A  ++ LE +  G+  +++GTH +  
Sbjct: 668 VPTTILAQQHFDNISDRFKDFPVNVALLSRFQSNAEVKEILEGLKVGKIDLVVGTHRILS 727

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L L+I+DE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S 
Sbjct: 728 KDVEFKDLGLLIIDEEQRFGVKHKERLKELKNNVDVLTLTATPIPRTLHMSMVGVRDLSV 787

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P  R PI+T +  + ++  VI    L+ +  +G + +++  +I +  E+     VE
Sbjct: 788 METPPVNRYPIQTYV--MEQLPSVIREACLREMARDG-QIFYLHNRIGDIDET-----VE 839

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L     + I  IHGRMS+     ++  F +    +L+ TT+IE GID+ + + +II
Sbjct: 840 HLHQLVPE--AKIEAIHGRMSENQMADILYRFLHKQFDILVTTTIIETGIDMPNVNTLII 897

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
           E+A+H+GL+QL+QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF I
Sbjct: 898 EDADHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLEAIRDFTELGSGFKI 957

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  DL  R  G +LG +Q G 
Sbjct: 958 AMRDLSIRGAGNMLGQQQHGF 978


>gi|163844731|ref|YP_001622386.1| transcription-repair coupling factor [Brucella suis ATCC 23445]
 gi|163675454|gb|ABY39564.1| transcription-repair coupling factor [Brucella suis ATCC 23445]
          Length = 1170

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 230/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++Q 
Sbjct: 589 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIEAVADDLAQG 644

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++          I 
Sbjct: 645 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPIN 704

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV
Sbjct: 705 VAHASRLVGAKELAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGV 761

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 762 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 821

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M
Sbjct: 822 VIRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQM 870

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 871 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 930

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 931 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 988

Query: 639 SG 640
           SG
Sbjct: 989 SG 990


>gi|238855038|ref|ZP_04645366.1| transcription-repair coupling factor [Lactobacillus jensenii 269-3]
 gi|282934824|ref|ZP_06340058.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
 gi|238832282|gb|EEQ24591.1| transcription-repair coupling factor [Lactobacillus jensenii 269-3]
 gi|281301096|gb|EFA93406.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
          Length = 1161

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 137/441 (31%), Positives = 233/441 (52%), Gaps = 21/441 (4%)

Query: 210 HNPR--KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           H P+  K    +W    R   +  E +A  +  L   ++ +K  G   + +  + +    
Sbjct: 550 HRPKVNKLGGSQWAKTKRSVQSKVEDIADDLIKLYAARESEK--GFAFSKDNDLQKAFED 607

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             P+  T  Q  +  +I  DM +   M R+L GDVG GKT VA+ A   A++   Q   +
Sbjct: 608 AFPYVETPDQLRSSNEIKADMEKPKAMDRLLVGDVGFGKTEVAIRAAFKAIQDNKQVAFL 667

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQH++ I    ++  + V +++     A  ++ LE +  G+  +++GTH +  
Sbjct: 668 VPTTILAQQHFDNISDRFKDFPVNVALLSRFQSNAEVKEILEGLKVGKIDLVVGTHRILS 727

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L L+I+DE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S 
Sbjct: 728 KDVEFKDLGLLIIDEEQRFGVKHKERLKELKNNVDVLTLTATPIPRTLHMSMVGVRDLSV 787

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P  R PI+T +  + ++  VI    L+ +  +G + +++  +I +  E+     VE
Sbjct: 788 METPPVNRYPIQTYV--MEQLPSVIREACLREMARDG-QIFYLHNRIGDIDET-----VE 839

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + L     + I  IHGRMS+     ++  F +    +L+ TT+IE GID+ + + +II
Sbjct: 840 HLHQLVPE--AKIEAIHGRMSENQMADILYRFLHKQFDILVTTTIIETGIDMPNVNTLII 897

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
           E+A+H+GL+QL+QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF I
Sbjct: 898 EDADHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLEAIRDFTELGSGFKI 957

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  DL  R  G +LG +Q G 
Sbjct: 958 AMRDLSIRGAGNMLGQQQHGF 978


>gi|213028844|ref|ZP_03343291.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 282

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 110/258 (42%), Positives = 160/258 (62%), Gaps = 4/258 (1%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
           PA+ RL  +ELLA  +++L +R   ++    P++    +  K+L ++PF PT +Q   + 
Sbjct: 10  PAQRRLILEELLAHNLSMLALRAGAQRYHTQPLSTNNILKDKLLASLPFKPTSAQARVVA 69

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I +DM+    M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +
Sbjct: 70  EIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFR 129

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
            + +   + V  + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DE
Sbjct: 130 NWFEPLGVEVGWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDE 189

Query: 403 QHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           QHRFGV QRL L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+
Sbjct: 190 QHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPV 249

Query: 459 KTVIIPINRIDEVIERLK 476
            TV IP  R  E+I+R++
Sbjct: 250 TTVAIPDTRRHEIIDRVR 267


>gi|86149008|ref|ZP_01067240.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597069|ref|ZP_01100305.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562119|ref|YP_002343898.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|85840366|gb|EAQ57623.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190758|gb|EAQ94731.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359825|emb|CAL34612.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284925731|gb|ADC28083.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 607

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 148/401 (36%), Positives = 224/401 (55%), Gaps = 23/401 (5%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+++PFS TK Q +A+KDI +D+  K    R++ GDVG GKTLV L   AA +    QA+
Sbjct: 219 LKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLL--GAALMVYPKQAI 276

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA Q YE  KK+  +   I+ I  G      + K LE+    +A+++IGTHAL
Sbjct: 277 LMAPTSILAYQLYEEAKKFLPDFMNILFIKGGK-----KEKDLEQNIQ-KANLVIGTHAL 330

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               ++ +  +LV++DEQHRFG  QR K   L ++  APH +  +ATPIPRTL +     
Sbjct: 331 IH--LESHNAVLVMIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLSMIQSEL 388

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           ++ S I + P  +K I T  I      ++ E++K  +++  +   I P +    +  + S
Sbjct: 389 LNFSFIKQMPF-KKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLLSASDKIPYLS 447

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +       H+   + + HG+  D  K+ +++ F++    +L++TTV+EVGI +   S+
Sbjct: 448 LEQAKEYWQSHY-EKVFVTHGK--DKQKDEILERFRD-EGNILLSTTVVEVGISLPRLSM 503

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I  AE  GLA LHQLRGRVGR    S+C L  +  L K   +RL    +T DGF IAE
Sbjct: 504 IVIVGAERLGLATLHQLRGRVGRVGLKSACYL--YTKL-KEIPSRLKEFASTLDGFKIAE 560

Query: 623 EDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
            DLK R  G++L G  Q G  +F        + +LE  +KD
Sbjct: 561 LDLKNRLSGDLLDGFMQHG-NEFKFFDFSKDEEILEKVKKD 600


>gi|110639820|ref|YP_680030.1| transcription-repair coupling factor [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282501|gb|ABG60687.1| transcription-repair coupling factor [Cytophaga hutchinsonii ATCC
           33406]
          Length = 1122

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 201/378 (53%), Gaps = 17/378 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  A  D+ +DM   + M R++ GDVG GKT +A+ A   AV  G Q  ++ P 
Sbjct: 558 YEDTPDQSKATADVKKDMESPHPMDRLVCGDVGFGKTEIAVRAAFKAVCDGKQVAVLVPT 617

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QHY+  +        +VE I         ++ L+R+  G+ +I+IGT  +    +
Sbjct: 618 TILAMQHYKTFRDRLSRFPCVVEYINRFKTAGQIKETLKRVKEGKTNILIGTQRVISKDV 677

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  + L+I+DE+ +FGV+ + KL +       L +TATPIPRTL  + +G  D+S I  
Sbjct: 678 EFQNVGLLIIDEEQKFGVKVKEKLREFKINIDTLTLTATPIPRTLHFSLMGARDLSIIAT 737

Query: 451 KPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R+P+ T    I+  DE   R  +   L  G + +++  ++++     F  ++++  
Sbjct: 738 PPPNRQPVTT---EIHVFDEAFIRDAISFELKRGGQVFFVHNRVKDIDGMAF--LIKKLV 792

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                  + +   HG+M     E VM  F  G   +L++T +IE G+D+ +A+ III +A
Sbjct: 793 P-----DARVTFAHGQMEGDKLEEVMLKFVEGEYDVLVSTNIIESGLDIPNANTIIINSA 847

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLK---NTEDGFLIAEE 623
             FGL+ LHQ+RGRVGR  + + C LL      L+ +S  RLSVL+   +  DGF +A  
Sbjct: 848 HMFGLSDLHQMRGRVGRSNKKAFCYLLTPSVSALTGDSRKRLSVLEEFSDLGDGFKVAMR 907

Query: 624 DLKQRKEGEILGIKQSGM 641
           DL  R  G +LG +QSG 
Sbjct: 908 DLDIRGAGNMLGAEQSGF 925


>gi|254511931|ref|ZP_05123998.1| transcription-repair coupling factor [Rhodobacteraceae bacterium
           KLH11]
 gi|221535642|gb|EEE38630.1| transcription-repair coupling factor [Rhodobacteraceae bacterium
           KLH11]
          Length = 1151

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 134/398 (33%), Positives = 219/398 (55%), Gaps = 21/398 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI ++++DM     M R++ GDVG GKT VA+ A   A  +G Q  ++AP
Sbjct: 594 PYQETDDQLRAISEVMEDMHSGAPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVVAP 653

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH    ++  +   + V  ++  +     ++  + +A G   I+IGTHAL    
Sbjct: 654 TTLLARQHAASFRERFRGFPLEVRQLSRFVSAKEAQQTRDGLARGTVDIVIGTHALLAKG 713

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 714 IRFNNLGLLIIDEEQHFGVGHKERLKQLRSDVHVLTLTATPIPRTLQLSLTGVRDLSIIG 773

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P++     S+   + E 
Sbjct: 774 TPPIDRLAIRTY---VSEFDAVTIR-EALLREHYRGGQSFYVVPRV-----SDLPGIEEF 824

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                   T  +A  HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++ 
Sbjct: 825 LKEQLPELTYVVA--HGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVH 882

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGLAQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A
Sbjct: 883 RADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRQKLTATAEKRLRVLGSLDTLGAGFTLA 942

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 943 SQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 978


>gi|262201520|ref|YP_003272728.1| transcription-repair coupling factor [Gordonia bronchialis DSM 43247]
 gi|262084867|gb|ACY20835.1| transcription-repair coupling factor [Gordonia bronchialis DSM 43247]
          Length = 1195

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 124/377 (32%), Positives = 203/377 (53%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 638  FTETVDQMTVIGEVKADMERPVPMDRVIVGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 697

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             ILAQQH +   +      + V  ++        R+ ++ +A G+  I+IGTH L Q  +
Sbjct: 698  TILAQQHLQTFSERMSGFPVRVRGLSRFTDARESREIIDAMATGEVDIVIGTHRLLQTGV 757

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L LVIVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 758  TWKDLGLVIVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILT 817

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T +       +V   ++  L    + +++  ++   +K   +  ++V    
Sbjct: 818  PPEERHPVLTYVGAYA-PKQVAAAIRRELLRDGQVFYVHNRVSTIDKTARDIAAMVPE-- 874

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + + + HG+M++   E  +  F N    +L+ TT+IE G+D+ +A+ +I++ A
Sbjct: 875  -------ARVVVAHGQMNEDQLEKTVSGFWNREFDVLVCTTIIETGLDISNANTLIVDRA 927

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
            E+ GL+QLHQLRGRVGR  E     LLY P  PL++ +Y RL+ +    +   G  +A +
Sbjct: 928  ENLGLSQLHQLRGRVGRSRERGYAYLLYSPERPLTETAYDRLATIAQNNELGAGMAVALK 987

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 988  DLELRGAGNVLGAEQSG 1004


>gi|34557604|ref|NP_907419.1| transcription-repair coupling factor [Wolinella succinogenes DSM
           1740]
 gi|34483321|emb|CAE10319.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Wolinella succinogenes]
          Length = 994

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 210/378 (55%), Gaps = 21/378 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE +I++I  D+     M R+L GDVG GKT VA+ A+ A V +G QA ++AP 
Sbjct: 480 FVYTSDQEKSIREIFSDLEGGKVMDRLLSGDVGFGKTEVAMNAILATVMSGYQAALVAPT 539

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH++ +KK  +   I +  +   +    R   L  +  G+  +++GTHA+   S 
Sbjct: 540 TLLAHQHFQSLKKRFEGRGIKMARLDRFLSSKERTSLLNALKEGEVDVVVGTHAIL--SA 597

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            + +L L+IVDE+H+FGV+Q+ ++   A   H+L M+ATPIPRTL +       +S +  
Sbjct: 598 VFKRLALIIVDEEHKFGVKQKERIKAIAQDVHMLSMSATPIPRTLNMALSSIKGMSTLLT 657

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P+ + P++T +       + E++ R    +  G + ++I         +N  ++  R  
Sbjct: 658 PPSEKLPVRTFVKEYQEALLKEIVHR---EIRRGGQIFYI--------HNNIATIERRQK 706

Query: 509 SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            L E   +  IAI+H ++ + + E +M +F+ G   LL++T++IE GI + +A+ III++
Sbjct: 707 ELLELMPNLKIAILHSQIPEKETEEIMLAFEEGRYHLLLSTSIIESGIHLPNANTIIIDS 766

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAE 622
           ++ FG+A LHQLRGRVGRG +   C  L      L+  +  RL  L++      G ++A 
Sbjct: 767 SDRFGIADLHQLRGRVGRGSKEGFCYFLVEEKESLTPEAKKRLLALESNSFLGSGSVLAY 826

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G +LG  QSG
Sbjct: 827 HDLEIRGGGNLLGEAQSG 844


>gi|73667378|ref|YP_303394.1| transcription-repair coupling factor [Ehrlichia canis str. Jake]
 gi|72394519|gb|AAZ68796.1| transcription-repair coupling factor [Ehrlichia canis str. Jake]
          Length = 1128

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 127/401 (31%), Positives = 215/401 (53%), Gaps = 18/401 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q       ++ T+ Q  AIKD+  D+S    M R++ GDVG GKT +AL A         
Sbjct: 581 QHFCNEFSYTETEDQLQAIKDMEHDLSSGKIMNRLICGDVGFGKTEIALRAAFLVANKNY 640

Query: 323 QAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q  ++ P  +L +QH+  F +++ +   I ++ ++  + ++  +K  E ++ GQ  IIIG
Sbjct: 641 QVAVIVPTTLLCRQHFIVFTERFKKFPNIKIKQLSKIVERSEIKKTKESLSCGQVQIIIG 700

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           THA+    + +  L L+I+DE+ +FGV+Q+  L +  T  HV+ ++ATPIPRTL ++  G
Sbjct: 701 THAILAKDVTFANLSLLIIDEEQQFGVKQKESLKKIKTNVHVISLSATPIPRTLYMSLCG 760

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL--SEGKKAYWICPQIEEKKESN 499
             D+S I   P  R P   V I     D+ I +  ++   + G + +++CPQI     SN
Sbjct: 761 IKDLSLIKTSPKNRLP---VTICTTHYDDTIIKDAIIREHNRGGRVFYVCPQI-----SN 812

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +S+ +    L      + A  HG++     +++M+ F +G   +L+ T++IE G+D+  
Sbjct: 813 IKSISDNLTKLVPGIKINTA--HGQLPPTQLDTIMNDFFDGKFTILLTTSIIECGLDIPF 870

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS---VLKNTED 616
           A+ III NA+ FGLAQL+QL+GRVGR         +    ++    T+L     + +   
Sbjct: 871 ANTIIIHNADMFGLAQLYQLKGRVGRSNIKGFVYFILSEKVTNKPTTKLEIIQSINSISS 930

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           GF ++  D+  R  G ++G +QSG  K +    EL+  +LE
Sbjct: 931 GFTLSLHDMDIRGFGNLVGEEQSGNIKDV--GIELYQQMLE 969


>gi|297616314|ref|YP_003701473.1| transcription-repair coupling factor [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144151|gb|ADI00908.1| transcription-repair coupling factor [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 1081

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 124/377 (32%), Positives = 206/377 (54%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  A+ ++ +DM     M R++ GDVG GKT VAL A   AV    Q  I+ P 
Sbjct: 546 YEETADQIRAVAEVKKDMETPRPMDRLICGDVGYGKTEVALRAAFKAVMDHKQVAILVPT 605

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA+QHY+   +  +NT +++E+++       +++ LE +  G   IIIGTH L    +
Sbjct: 606 TILAEQHYQTCLERFKNTPVVIEVLSRFRTPGQQKRILEDLKKGVIDIIIGTHRLLSRDV 665

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L++VDE+HRFGV+Q+ ++         L ++ATPIPRTL +   G  D+S I  
Sbjct: 666 RFKDLGLLVVDEEHRFGVRQKERIKALKETVDALSLSATPIPRTLHMALTGLRDLSVIET 725

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R PI T ++  N  D + E ++  +  G + + +  +I++         +E F + 
Sbjct: 726 PPPDRYPITTYVLEYNE-DIIREAIRAEVERGGQVFAVHNRIQD---------IEMFRNH 775

Query: 511 HEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            +     +   + HGR+ + +   +M  F N   ++L+ TT+IE G+D+ + + +I++ A
Sbjct: 776 LQMLVPEVKMEVAHGRVPEDELADIMKRFLNQEFQVLVCTTIIESGLDMPNVNTLIVDEA 835

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEE 623
           +  GLAQL+QLRGRVGR + ++     Y P   +++ +  RL+ ++  TE   G  IA  
Sbjct: 836 DRLGLAQLYQLRGRVGRSKRLAYAYFTYRPDKSVTEAAQKRLNAIREFTELGSGMKIALR 895

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G ILG +Q G
Sbjct: 896 DLEIRGAGNILGPEQHG 912


>gi|17989033|ref|NP_541666.1| transcription-repair coupling factor [Brucella melitensis bv. 1
           str. 16M]
 gi|17984874|gb|AAL53930.1| transcription-repair coupling factor [Brucella melitensis bv. 1
           str. 16M]
          Length = 1170

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 137/421 (32%), Positives = 227/421 (53%), Gaps = 33/421 (7%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           +AG +  +   +Q +   G P+    G +  +     P+  T  Q +AI+ +  D++Q  
Sbjct: 589 IAGHLIQIAAERQMR---GAPVMTPPGGLYAEFAARFPYDETDDQLTAIEAVADDLAQGK 645

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++          I V
Sbjct: 646 PMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPINV 705

Query: 353 ---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
                + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV+
Sbjct: 706 AHASRLVGAKELAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGVK 762

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467
            +  L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +   
Sbjct: 763 HKEWLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPLV 822

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M+
Sbjct: 823 IRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQMA 871

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
               + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR 
Sbjct: 872 PGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGRS 931

Query: 587 EEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQS 639
           ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +QS
Sbjct: 932 KQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQS 989

Query: 640 G 640
           G
Sbjct: 990 G 990


>gi|148255539|ref|YP_001240124.1| transcription repair coupling factor [Bradyrhizobium sp. BTAi1]
 gi|146407712|gb|ABQ36218.1| transcription-repair coupling factor [Bradyrhizobium sp. BTAi1]
          Length = 1171

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 148/452 (32%), Positives = 239/452 (52%), Gaps = 39/452 (8%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +AG++  +   +   +   +P  V+  +  +     P+  T+ Q +AI+  L D+     
Sbjct: 585  MAGELIKIAAERMLHEAPKLP--VQAGLYDEFCARFPYDETEDQLTAIQATLADLEAGRP 642

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA+QH +   +  +   +   
Sbjct: 643  MDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTFTERFKGFPV--- 699

Query: 354  IITGNMPQAHR---RKALERI----AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
                N+ QA R    K L ++    A G   I++GTHAL   S+++  L LVIVDE+  F
Sbjct: 700  ----NVAQASRLVSTKELNQVKKGLADGSVDIVVGTHALLGKSVKFRDLGLVIVDEEQHF 755

Query: 407  GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
            GV  + +L Q     HVL ++ATPIPRTL L   G  ++S I   P  R  ++T + P +
Sbjct: 756  GVGHKERLKQLRAEVHVLTLSATPIPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHD 815

Query: 467  RIDEVIERLKVVLSEGKKAYWICPQIE---EKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             +  + E L      G +A+++ P+I+   E KE   ++V E            +A+ HG
Sbjct: 816  PV-MIREALLRERYRGGQAFYVVPRIDDLAEVKEFLDKTVPE----------MKVAVAHG 864

Query: 524  RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +M+    E ++ +F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRV
Sbjct: 865  QMAPTVIEDIIGAFYDGKFDILLSTTIVESGLDIPRANTLIVHRADMFGLAQLYQLRGRV 924

Query: 584  GRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIK 637
            GR  ++ +  L   P    +S  +  RL VL++ E    GF +A  DL  R  G +LG +
Sbjct: 925  GR-SKLRAYALFTLPSTHKISAQAEKRLGVLQSLETLGAGFQLASHDLDIRGAGNLLGDE 983

Query: 638  QSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            QSG  K +    EL+ S+LE A ++ K  +T+
Sbjct: 984  QSGHIKEV--GFELYQSMLEEAIENLKAGITE 1013


>gi|124516600|gb|EAY58108.1| transcription-repair coupling factor [Leptospirillum rubarum]
          Length = 1153

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 129/382 (33%), Positives = 215/382 (56%), Gaps = 21/382 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T  QE A + + +DM     M R++ GDVG GKT +A+ A   AV  G Q  ++
Sbjct: 599 SFPYDLTPDQEDAWRAVSEDMEAPTPMDRLILGDVGFGKTEIAMRAAFKAVADGYQVALL 658

Query: 328 APIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P  +LA+QHYE F+ +++    + +  I+  + QA  R   ++++ G+  I+IGT AL 
Sbjct: 659 VPTTLLAKQHYESFLDRFS-GFPVRIGHISRMVSQAEIRATRKKLSLGEIDILIGTTALI 717

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
                +  L L+I+DE+ RFGV Q+ KL  + T+  VL ++ATPIPRTL ++  G   IS
Sbjct: 718 SKETTFRNLGLLIIDEEQRFGVGQKEKLKSRYTSVDVLTLSATPIPRTLQMSLSGLRGIS 777

Query: 447 KITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            I   P GRKPI+T I+  +  RI E I+R    L+   + ++I  +++        ++ 
Sbjct: 778 FIMTPPPGRKPIRTAILTFDRHRIHEAIDR---ELARDGQVFFIHNRVQ--------TIS 826

Query: 505 ERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
              + L + F    I + HG+M D   E VM+ F     ++L++T ++E G+D+  A+ I
Sbjct: 827 RMVHYLAKLFPGVPIGMAHGQMEDSRMEEVMEKFIQRHYRILVSTAIVESGLDIPAANTI 886

Query: 564 IIENAEHFGLAQLHQLRGRVGR-GEEISSCILL-YHPPLSKNSYTRLSVLKNTE---DGF 618
           I+  A+ FG+++L+Q+RGRVGR G++  +  L+     L+  +  RL  L++      G+
Sbjct: 887 IVNRADMFGISELYQIRGRVGRSGQQAYAYFLIPSESGLTDTARKRLKTLQDNTSLGSGY 946

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            IA  D++ R  G +LG +Q+G
Sbjct: 947 QIAMRDMEIRGAGSLLGHQQTG 968


>gi|308803831|ref|XP_003079228.1| putative helicase (ISS) [Ostreococcus tauri]
 gi|116057683|emb|CAL53886.1| putative helicase (ISS) [Ostreococcus tauri]
          Length = 905

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 203/381 (53%), Gaps = 26/381 (6%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           ++ P+  T  Q  A++DI  D+S+   M R++ GDVG GKT VA+ A+     +GG   +
Sbjct: 356 KSFPYKLTPDQVRAVEDITIDLSRDAPMDRLVIGDVGFGKTEVAMRAIFHVASSGGGVFM 415

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  +LA+QH   +    +   I VE++T ++ ++   +  E+   G   II+GTH L 
Sbjct: 416 MAPTTVLAKQHAANLAARFRPLGINVELVTRHVVKSRHTEIFEKFKEGTVQIIVGTHKLV 475

Query: 387 Q-DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             DS  Y KL L+++DE+ RFGV+ + +++       VL ++ATPIPRTL +   G  D 
Sbjct: 476 NLDSEYYRKLKLLVIDEEQRFGVKHKDQISALKAEVDVLTLSATPIPRTLHMAMSGFRDA 535

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S +   P  R+PI T++ P N  D +   ++  L+   + Y+I P++   KE++     E
Sbjct: 536 SLVQTPPPERRPINTILAPQNDAD-ITRAIEHELNRNGQVYYIVPRVSMMKEAS-----E 589

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           R N L       I   HG+M     +  M++F +GT  +LIATT++E G+D+ + + III
Sbjct: 590 RLNRLFPEL--RIMTCHGQMDGDQIDDAMEAFSSGTADVLIATTIVESGLDIPNCNTIII 647

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY---HPPLSKNSYTRLSVLKNT---EDGFL 619
           EN           LRGRVGR    +   + Y      L+  +  RL+ L+      +GF 
Sbjct: 648 EN-----------LRGRVGRAGRQAYAYMFYSSDESELTPAAQERLAALEECCGLGEGFR 696

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           ++E D+  R  G + G KQSG
Sbjct: 697 LSERDMGIRGVGTMFGEKQSG 717


>gi|89892935|ref|YP_516422.1| hypothetical protein DSY0189 [Desulfitobacterium hafniense Y51]
 gi|89332383|dbj|BAE81978.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1178

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 131/389 (33%), Positives = 206/389 (52%), Gaps = 25/389 (6%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+     P+  T  Q   I ++ QDM ++  M R+L GDVG GKT VAL A   AV    
Sbjct: 619 QEFEEKFPYQETPDQMQCIVEVKQDMMRQRPMDRLLCGDVGYGKTEVALRAAFKAVMDSK 678

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  ILAQQH+   ++      + +++++       ++  L+ +  G   I++GT
Sbjct: 679 QVAVLVPTTILAQQHFNTFQERFMGYPVSIQMLSRFRSAKEQKLILQGLKEGSIDIVVGT 738

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L  DSI++  L L+IVDE+ RFGV  + KL        VL ++ATPIPRTL ++ +G 
Sbjct: 739 HKLVSDSIKFKDLGLLIVDEEQRFGVAHKEKLKTLKANVDVLTLSATPIPRTLHMSLVGV 798

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
            D+S I   P  R P++T +    R D V E ++  +  G + +++  ++E     +   
Sbjct: 799 RDLSIIETPPEDRFPVQTYVAEF-RPDVVREAIRREIQRGGQVFFVHNRVE-----DMEQ 852

Query: 503 VVERFNSLHEHFTSSI------AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           VV        HF S +       I HG+MS+ + E  M +F      +L+ TT+IE G+D
Sbjct: 853 VV--------HFLSQLVPEARYGIAHGQMSEKELEQEMLAFLEHESDVLVCTTIIETGLD 904

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN- 613
           + + + +II+ A+  GL QL+QLRGRVGR    +    LY P   L++ +  RL+ ++  
Sbjct: 905 MPNVNTLIIDEADRLGLGQLYQLRGRVGRSNRRAYSYFLYKPQKVLTEVAEKRLAAIREF 964

Query: 614 TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
           TE   G  IA  DL+ R  G ++G +Q G
Sbjct: 965 TEFGSGLKIAMRDLEIRGAGNLIGAQQHG 993


>gi|283850616|ref|ZP_06367903.1| transcription-repair coupling factor [Desulfovibrio sp. FW1012B]
 gi|283573859|gb|EFC21832.1| transcription-repair coupling factor [Desulfovibrio sp. FW1012B]
          Length = 1150

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 200/380 (52%), Gaps = 23/380 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI ++L DM +   M R++ GDVG GKT VAL A   AV  G Q  ++ P 
Sbjct: 603 FEETPDQEKAIAEVLADMERPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVAMLCPT 662

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QHY+      +   + VE+++  +    R+  LE +A G+  I+IGTH +    +
Sbjct: 663 TVLAEQHYQNFAARLEGFPVRVEMLSRFVSPKRRKVVLESVARGEVDILIGTHRILSADV 722

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
               + L+I+DE+ RFGV+ + +L         L +TATPIPRTL L+  G   +S I  
Sbjct: 723 TIPNIGLLILDEEQRFGVKHKERLKAFKKNIDALTLTATPIPRTLQLSLSGVRGLSVIET 782

Query: 451 KPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            PA RK ++T ++     DE    E L+  L    + +W+  +++         V     
Sbjct: 783 PPAERKTVETALV---ERDEAFLKEVLRRELERQGQVFWVHNRVQ-----GLEDVAAFVK 834

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +L     + +A+ HG+MS+   E  M  F +G   +L+ T++IE G+D   A+ ++++NA
Sbjct: 835 TLAPE--AKVAMAHGQMSETALEEAMHGFWHGETDILVCTSIIESGLDFPRANTLVVDNA 892

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYH-----PPLSKNSYTRLSVLKNTE---DGFLI 620
             FGL QL+QLRGRVGR    +    +       P L++    RL V+ + +    GF +
Sbjct: 893 HMFGLGQLYQLRGRVGRSPRQAYAYFVVPSIEKVPELARK---RLRVILDMDYLGAGFQV 949

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A EDL+ R  G ILG  QSG
Sbjct: 950 AMEDLRLRGAGNILGEAQSG 969


>gi|317481970|ref|ZP_07940995.1| ATP-dependent DNA helicase RecG [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916537|gb|EFV37934.1| ATP-dependent DNA helicase RecG [Bifidobacterium sp. 12_1_47BFAA]
          Length = 943

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 146/407 (35%), Positives = 199/407 (48%), Gaps = 92/407 (22%)

Query: 176 VEALSR-LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            EALS+ +P VLPE + K     K+    AEAF  IH+P     F+    A E L Y+E 
Sbjct: 284 AEALSQSIPDVLPESVRK----AKNLMHRAEAFLAIHDPASTARFK---EAIETLRYEEA 336

Query: 234 LAGQIALLLMRKQFKKEIGIPI-----------NVEGKIAQ------------------- 263
              Q +LL  R+   K    P            +V   +A+                   
Sbjct: 337 FVSQTSLLKSRQHAHKSSAHPCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPNL 396

Query: 264 --------KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
                   + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM 
Sbjct: 397 PNLPNLRDRFIASLPFTLTAGQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAML 456

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN---------------------------- 347
            AV AG QAV++AP  +LA+QHYE I K                                
Sbjct: 457 QAVGAGYQAVLVAPTQVLAEQHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGAST 516

Query: 348 -------TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
                   +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++
Sbjct: 517 VSSSKVTAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVI 576

Query: 401 DEQHRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           DEQHRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKP
Sbjct: 577 DEQHRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKP 636

Query: 458 IKTVIIPINRID-----EVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           I+TV+  +N  D      +   ++  +  G++AY +CP+I+   E N
Sbjct: 637 IRTVV--VNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 681



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 103/193 (53%), Gaps = 2/193 (1%)

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS 
Sbjct: 748 IADRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASC 807

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+
Sbjct: 808 IVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQ 867

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSI 681
            DL+ R  G++LG  QSG    L     + D+ ++  AR  A+ +L  DP+L     Q  
Sbjct: 868 ADLEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAEQLLAADPELAG-EVQLA 926

Query: 682 RILLYLYQYNEAF 694
             +L   + NE F
Sbjct: 927 GAVLDFTRGNETF 939


>gi|115524796|ref|YP_781707.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            BisA53]
 gi|115518743|gb|ABJ06727.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            BisA53]
          Length = 1179

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 141/435 (32%), Positives = 230/435 (52%), Gaps = 25/435 (5%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +AG++  +   +Q ++     I V+  +  +     P+  T+ Q +AI   L D+     
Sbjct: 587  MAGELIKIAAERQLRETQ--KIAVQPHLYDEFCARFPYEETEDQLAAINAALHDLETGKP 644

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA+QH        +   + + 
Sbjct: 645  MDRLVCGDVGFGKTEVALRAAFAVALEGKQVAVVVPTTLLARQHTRTFADRFRGLPVTIG 704

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
              +  +         + IA G   I++GTHAL   +I++  L L++VDE+  FGV  + +
Sbjct: 705  QASRLVSTKELTLVKKGIADGSIDIVVGTHALLGKAIKFKDLGLIVVDEEQHFGVTHKER 764

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEV 471
            L Q     HVL ++ATPIPRTL L   G  D+S I   P  R  ++T + P +   I E 
Sbjct: 765  LKQLRAEVHVLTLSATPIPRTLQLALTGVRDLSIIASAPVDRLAVRTFVAPHDPLMIREA 824

Query: 472  IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
            + R +     G +A+++CP+IE+       + V+ F  L +H     +A+ HG+M     
Sbjct: 825  LLRERY---RGGQAFYVCPRIEDL------AGVKDF--LDKHVPEMKVAVAHGQMPPTVI 873

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E ++ +F +G   +L++T+++E G+D+ +A+ +I+  A+ FGLAQL+QLRGRVGR  ++ 
Sbjct: 874  EDIISAFYDGKYDILLSTSIVESGLDIPNANTLIVHRADMFGLAQLYQLRGRVGR-SKLR 932

Query: 591  SCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKF 644
            +  L   P    ++  +  RL VL++ E    GF +A  DL  R  G +LG +QSG  K 
Sbjct: 933  AYALFTLPSTHKITAQAERRLKVLQSLETLGAGFQLASHDLDIRGSGNLLGEEQSGHIKE 992

Query: 645  LIAQPELHDSLLEIA 659
            +    EL+ S+LE A
Sbjct: 993  V--GFELYQSMLEEA 1005


>gi|256015355|ref|YP_003105364.1| transcription-repair coupling factor [Brucella microti CCM 4915]
 gi|255998015|gb|ACU49702.1| transcription-repair coupling factor [Brucella microti CCM 4915]
          Length = 1122

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 131/384 (34%), Positives = 214/384 (55%), Gaps = 29/384 (7%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AI+ +  D++Q   M R++ GDVG GKT VAL A   A  +G Q  ++ P
Sbjct: 575 PYDETDDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVP 634

Query: 330 IGILAQQHYEFIKKYTQNTQIIV---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
             +L++QH++          I V     + G    A  +K LE    G   I++GTHAL 
Sbjct: 635 TTLLSRQHFKTFSNRFHGLPINVAHASRLVGAKELAATKKGLE---EGTVDIVVGTHALL 691

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
             SI++  L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S
Sbjct: 692 GSSIKFKNLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELS 751

Query: 447 KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            IT  P  R  ++T + P +   I E + R +     G +++++ P+I +  +      +
Sbjct: 752 LITTPPVDRMAVRTFVSPFDPLVIRETLLRERY---RGGQSFYVVPRIADLTD------I 802

Query: 505 ERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           E F  L EH     +A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +
Sbjct: 803 EEF--LKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTM 860

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTED--- 616
           I+  A+ FGLAQL+QLRGRVGR ++      L+  P    L++ +  RL VL++ +    
Sbjct: 861 IVHRADMFGLAQLYQLRGRVGRSKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGA 918

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF +A  D+  R  G +LG +QSG
Sbjct: 919 GFQLASHDMDIRGAGNLLGEEQSG 942


>gi|315124568|ref|YP_004066572.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315018290|gb|ADT66383.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 978

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 211/379 (55%), Gaps = 23/379 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE A  +ILQD      M R+L GDVG GKT VA+ A+   V++G  A + AP 
Sbjct: 466 FIYTSDQEKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPT 525

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L+ QHY+ +KK      I V  +      A +++ L+ +   +A +++GTHAL   S+
Sbjct: 526 TLLSHQHYKTLKKRFDPFDIEVFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALL--SV 583

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKI 448
           +   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR+L   L+S+    +  +
Sbjct: 584 ECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSV--L 641

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
              P  R  ++T +   +   + E I R    L  G + ++I   I   ++   + ++E 
Sbjct: 642 QTPPEDRMDVRTFVKENDDALLKEAIAR---ELRRGGQIFYIHNHIASIEQCK-KHLLEL 697

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F++L       I I+H ++    +E  M  F+N    LL++T+++E GID+ +A+ II+E
Sbjct: 698 FSTLR------ILILHSKIDAKVQEEEMLKFENKEYDLLLSTSIVESGIDLPNANTIIVE 751

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIA 621
            ++ FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L++      G ++A
Sbjct: 752 KSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSLESNSFLGAGSVLA 811

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G +LG+ QSG
Sbjct: 812 YHDLEIRGGGNLLGVDQSG 830


>gi|118474124|ref|YP_891808.1| ATP-dependent DNA helicase RecG [Campylobacter fetus subsp. fetus
           82-40]
 gi|261886450|ref|ZP_06010489.1| ATP-dependent DNA helicase RecG [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|118413350|gb|ABK81770.1| ATP-dependent DNA helicase RecG [Campylobacter fetus subsp. fetus
           82-40]
          Length = 602

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 148/396 (37%), Positives = 207/396 (52%), Gaps = 40/396 (10%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P N++       L ++PF PT  Q +AIKDI  D+SQ     R++ GDVGSGKTLV L  
Sbjct: 212 PFNIDS-----WLESLPFKPTNDQLAAIKDIKNDISQNIAAKRVIMGDVGSGKTLVML-- 264

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
            AA +     AV+MAP  ILA Q Y   K+   +    V +          +K  + +  
Sbjct: 265 AAALMIYPKPAVLMAPTSILADQLYSEAKRLLPSFYNTVLV----------KKGAKNVDF 314

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLMTAT 429
             A++IIGTH L   S+   +  LV+VDEQHRFG  QR K+ +         H L  +AT
Sbjct: 315 SDANLIIGTHVLLYQSLP--QSPLVMVDEQHRFGSNQRKKIDELTRDFDKRAHFLQFSAT 372

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L     +  S + E P  +K I T+I+  +    ++E LK  + + ++A  + 
Sbjct: 373 PIPRTLSLIESQIVSFSFLKEIPY-KKNIHTIILQNSGFSGLLEHLKNEIQKNRQAIIVY 431

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK-NGTCKLLIAT 548
           P +EE + S+++S+ E        F   + + HG+  D DKE  +  F  +G   +L+ T
Sbjct: 432 PLVEESEMSSYQSLSEASGFWESRF-EKVYLTHGK--DRDKEDTLKKFAYDGN--ILLTT 486

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL---LYHPPLSKNSY 605
           TV+EVGI +   S I+I  AE  GLA LHQLRGRVGR      C +   L  PP      
Sbjct: 487 TVVEVGISLPKLSTIVIVGAERLGLATLHQLRGRVGRNGGEGWCYIYTKLKDPP------ 540

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSG 640
            RL     T DGFL+A+ DLK R+ G++L G  Q G
Sbjct: 541 NRLLEFSRTLDGFLVAKLDLKNRQAGDVLDGTLQHG 576


>gi|220921591|ref|YP_002496892.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219946197|gb|ACL56589.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 1091

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 227/428 (53%), Gaps = 22/428 (5%)

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++ + E  IP +   +  ++      FS T  Q +AI  +L+D++    M R++ GDVG
Sbjct: 533 RRRARAEPLIPPD---RQMERFCAGFGFSLTPDQAAAIDAVLEDLAAGRPMDRLVCGDVG 589

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
            GKT VAL A AAA+ AG Q  + AP  +L +QH E  ++      I+   ++   P A 
Sbjct: 590 FGKTEVALRAAAAALFAGRQVALAAPTTVLVRQHTETFRRRFARFGIVPAQLSRLTPPAE 649

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
            ++    +A G   ++IGTHAL    ++   L LVI+DE+ RFG  Q+ +L + A   HV
Sbjct: 650 AKRVKAGLAEGSVRLVIGTHALAGRGVRMPDLGLVIIDEEQRFGTAQKERLRRAARGAHV 709

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L +TATPIPRTL    +G  D+S I   P  R+PI+TVI P    D V   L      G 
Sbjct: 710 LTLTATPIPRTLQTALVGLQDLSVIATPPVVRQPIRTVIAPFA-PDTVRAALMREHRRGG 768

Query: 484 KAYWICPQIEE--KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +++ +CP+I +    E+  RS+V            +IA+ HG +     +  M  F  G 
Sbjct: 769 QSFVVCPRIADLAPMEAQLRSIVPEL---------TIALAHGELPPDTMDEAMVRFAAGE 819

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--- 598
             +L+AT +IE G+DV  A+ +++ + E FGLAQLHQLRGRVGRG+  ++  LL  P   
Sbjct: 820 GDVLLATNIIESGLDVPRANTMLVWHPERFGLAQLHQLRGRVGRGQRRAAAYLLTDPQAR 879

Query: 599 -PLSKNSYTR-LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            P +     R L+ L     GF ++  DL  R  G++ G  Q+G  K +    +L+  LL
Sbjct: 880 LPAASEKRLRTLAALDRLGAGFALSARDLDLRGAGDLFGEDQAGHVKLIGL--DLYRDLL 937

Query: 657 EIARKDAK 664
           E A + A+
Sbjct: 938 ERAVRAAR 945


>gi|28493149|ref|NP_787310.1| transcription-repair coupling factor [Tropheryma whipplei str. Twist]
 gi|28476189|gb|AAO44279.1| transcription-repair coupling factor [Tropheryma whipplei str. Twist]
          Length = 1291

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 123/373 (32%), Positives = 197/373 (52%), Gaps = 11/373 (2%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            ++ T+ QE  I  +  DM     M RI+ GDVG GKT +A+ A   AV+   Q  ++ P 
Sbjct: 742  YTETRDQEKTIVAVKADMENSKPMDRIISGDVGFGKTEIAMRAAFKAVQDNKQVAVLVPT 801

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QH +   +      + +  ++    ++  +K +  I+ G   I+IGTH L    I
Sbjct: 802  TLLARQHIQTFCERFDKWPVTIASLSRFQSKSEIQKTICGISSGGIDIVIGTHMLLNKKI 861

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            Q+  L L+I+DE+HRFGV  +  + +      +L M+ATPIPRTL ++ +G  +IS ++ 
Sbjct: 862  QFKDLGLLIIDEEHRFGVNHKEAIKKLKIGIDILAMSATPIPRTLEMSLMGIKEISTLST 921

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R PI T + P  R  +VI  ++  +  G + ++I         +    V +R   L
Sbjct: 922  PPENRMPILTHVGPY-RDKQVIAAVRREIIRGGQVFYI-----HNDTATISRVAQRLEQL 975

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + +   H ++++   E  +  F  G   +L+ TT+IE G+D  +A+ III++AE+
Sbjct: 976  IPE--ARVVSAHAKLAERMLEKTVIDFWEGKYDILVCTTIIETGLDNANANTIIIDSAEN 1033

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            +GL+QLHQLRGRVGRG + +   L Y   L   +Y RL  +        G  IA +DL+ 
Sbjct: 1034 YGLSQLHQLRGRVGRGTKRAYAYLFYTSTLKDTAYKRLEAIARNNHLGAGAQIAMKDLEL 1093

Query: 628  RKEGEILGIKQSG 640
            R  G +LG  QSG
Sbjct: 1094 RGAGSLLGHAQSG 1106


>gi|86151063|ref|ZP_01069279.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|86153028|ref|ZP_01071233.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613373|ref|YP_001000763.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85842233|gb|EAQ59479.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85843913|gb|EAQ61123.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249115|gb|EAQ72076.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 978

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 211/379 (55%), Gaps = 23/379 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE A  +ILQD      M R+L GDVG GKT VA+ A+   V++G  A + AP 
Sbjct: 466 FIYTSDQEKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPT 525

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L+ QHY+ +KK      I V  +      A +++ L+ +   +A +++GTHAL   S+
Sbjct: 526 TLLSHQHYKTLKKRFDPFDIEVFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALL--SV 583

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKI 448
           +   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR+L   L+S+    +  +
Sbjct: 584 ECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSV--L 641

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
              P  R  ++T +   +   + E I R    L  G + ++I   I   ++   + ++E 
Sbjct: 642 QTPPEDRMDVRTFVKENDDALLKEAIAR---ELRRGGQIFYIHNHIASIEQCK-KHLLEL 697

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F++L       I I+H ++    +E  M  F+N    LL++T+++E GID+ +A+ II+E
Sbjct: 698 FSTLR------ILILHSKIDAKVQEEEMLKFENKEYDLLLSTSIVESGIDLPNANTIIVE 751

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIA 621
            ++ FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L++      G ++A
Sbjct: 752 KSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSLESNSFLGAGSVLA 811

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G +LG+ QSG
Sbjct: 812 YHDLEIRGGGNLLGVDQSG 830


>gi|86749967|ref|YP_486463.1| transcription-repair coupling factor [Rhodopseudomonas palustris
           HaA2]
 gi|86572995|gb|ABD07552.1| transcription-repair coupling factor [Rhodopseudomonas palustris
           HaA2]
          Length = 1171

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 133/393 (33%), Positives = 212/393 (53%), Gaps = 18/393 (4%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           ++VE  +  +     P+  T+ Q +AI   L D+ +   M R++ GDVG GKT VAL A 
Sbjct: 605 LHVEPHLYDEFCARFPYEETEDQLAAINAALGDLERGMPMDRLVCGDVGFGKTEVALRAA 664

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
            A    G Q  ++ P  +LA+QH +   +  +   + V   +  +      +  + +A G
Sbjct: 665 FAVALDGKQVAVVVPTTLLARQHAKTFTERFRGFPVNVGQASRLVSPKELTQVKKGLAEG 724

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           Q  I++GTHAL    I++  L LV+VDE+  FGV  + KL Q  +  HVL ++ATPIPRT
Sbjct: 725 QIDIVVGTHALLGKGIKFKDLGLVVVDEEQHFGVTHKEKLKQLRSEVHVLTLSATPIPRT 784

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQI 492
           L L   G  D+S I   P  R  ++T + P +   I E + R +     G +A+++ P+I
Sbjct: 785 LQLAMTGVRDLSIIASPPVDRLAVRTFVAPHDPLMIREALLRERY---RGGQAFYVVPRI 841

Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           ++  E      V+ F  L +H     +A+ HG+M     E +M +F +    +L++TT++
Sbjct: 842 DDLAE------VKDF--LDKHVPEMKVAVAHGQMPPTVIEDIMSAFYDAKYDILLSTTIV 893

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE-EISSCILLYHPPLSKNSYTRLSV 610
           E G+D+ +A+ +I+  A+ FGLAQL+QLRGRVGR +    +   L    ++  +  RL V
Sbjct: 894 ESGLDIPNANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPQHNITAQAERRLKV 953

Query: 611 LKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           L++ E    GF +A  DL  R  G +LG +QSG
Sbjct: 954 LQSLETLGAGFQLASHDLDIRGAGNLLGEEQSG 986


>gi|282853612|ref|ZP_06262949.1| transcription-repair coupling factor [Propionibacterium acnes J139]
 gi|282583065|gb|EFB88445.1| transcription-repair coupling factor [Propionibacterium acnes J139]
          Length = 1209

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 198/374 (52%), Gaps = 17/374 (4%)

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L
Sbjct: 653  TPDQLTTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL 712

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             QQH++   +      + V  ++        R+ LE +  G   +++GTH L    +++ 
Sbjct: 713  VQQHFQTFTERYAGFPVKVAALSRFQTDTEARETLEGLKRGTVDVVVGTHRLLAKEVEFK 772

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P 
Sbjct: 773  DLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPE 832

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLH 511
             R P+ T   P +   +V+  ++  L+   + ++I  +++  EK  +  R +V       
Sbjct: 833  ERHPVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPE----- 886

Query: 512  EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  
Sbjct: 887  ----ARIVTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLM 942

Query: 572  GLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GL+QLHQLRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+
Sbjct: 943  GLSQLHQLRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLE 1002

Query: 627  QRKEGEILGIKQSG 640
             R  G +LG +QSG
Sbjct: 1003 IRGAGNLLGGEQSG 1016


>gi|314982388|gb|EFT26481.1| transcription-repair coupling factor [Propionibacterium acnes
            HL110PA3]
 gi|315092571|gb|EFT64547.1| transcription-repair coupling factor [Propionibacterium acnes
            HL110PA4]
          Length = 1208

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 198/374 (52%), Gaps = 17/374 (4%)

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L
Sbjct: 652  TPDQLTTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL 711

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             QQH++   +      + V  ++        R+ LE +  G   +++GTH L    +++ 
Sbjct: 712  VQQHFQTFTERYAGFPVKVAALSRFQTDTEARETLEGLKRGTVDVVVGTHRLLAKEVEFK 771

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P 
Sbjct: 772  DLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPE 831

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLH 511
             R P+ T   P +   +V+  ++  L+   + ++I  +++  EK  +  R +V       
Sbjct: 832  ERHPVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPE----- 885

Query: 512  EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  
Sbjct: 886  ----ARIVTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLM 941

Query: 572  GLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GL+QLHQLRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+
Sbjct: 942  GLSQLHQLRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLE 1001

Query: 627  QRKEGEILGIKQSG 640
             R  G +LG +QSG
Sbjct: 1002 IRGAGNLLGGEQSG 1015


>gi|315104557|gb|EFT76533.1| transcription-repair coupling factor [Propionibacterium acnes
            HL050PA2]
          Length = 1208

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 198/374 (52%), Gaps = 17/374 (4%)

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L
Sbjct: 652  TPDQLTTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL 711

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             QQH++   +      + V  ++        R+ LE +  G   +++GTH L    +++ 
Sbjct: 712  VQQHFQTFTERYAGFPVKVAALSRFQTDTEARETLEGLKRGTVDVVVGTHRLLAKEVEFK 771

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P 
Sbjct: 772  DLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPE 831

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLH 511
             R P+ T   P +   +V+  ++  L+   + ++I  +++  EK  +  R +V       
Sbjct: 832  ERHPVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPE----- 885

Query: 512  EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  
Sbjct: 886  ----ARIVTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLM 941

Query: 572  GLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GL+QLHQLRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+
Sbjct: 942  GLSQLHQLRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLE 1001

Query: 627  QRKEGEILGIKQSG 640
             R  G +LG +QSG
Sbjct: 1002 IRGAGNLLGGEQSG 1015


>gi|314922168|gb|EFS85999.1| transcription-repair coupling factor [Propionibacterium acnes
            HL001PA1]
 gi|314965251|gb|EFT09350.1| transcription-repair coupling factor [Propionibacterium acnes
            HL082PA2]
 gi|315094011|gb|EFT65987.1| transcription-repair coupling factor [Propionibacterium acnes
            HL060PA1]
 gi|327329541|gb|EGE71301.1| transcription-repair coupling factor [Propionibacterium acnes
            HL103PA1]
          Length = 1208

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 198/374 (52%), Gaps = 17/374 (4%)

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L
Sbjct: 652  TPDQLTTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL 711

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             QQH++   +      + V  ++        R+ LE +  G   +++GTH L    +++ 
Sbjct: 712  VQQHFQTFTERYAGFPVKVAALSRFQTDTEARETLEGLKRGTVDVVVGTHRLLAKEVEFK 771

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P 
Sbjct: 772  DLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPE 831

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLH 511
             R P+ T   P +   +V+  ++  L+   + ++I  +++  EK  +  R +V       
Sbjct: 832  ERHPVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPE----- 885

Query: 512  EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  
Sbjct: 886  ----ARIVTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLM 941

Query: 572  GLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GL+QLHQLRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+
Sbjct: 942  GLSQLHQLRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLE 1001

Query: 627  QRKEGEILGIKQSG 640
             R  G +LG +QSG
Sbjct: 1002 IRGAGNLLGGEQSG 1015


>gi|297205117|ref|ZP_06922513.1| transcription-repair coupling factor [Lactobacillus jensenii
           JV-V16]
 gi|297149695|gb|EFH29992.1| transcription-repair coupling factor [Lactobacillus jensenii
           JV-V16]
          Length = 1162

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 136/441 (30%), Positives = 231/441 (52%), Gaps = 21/441 (4%)

Query: 210 HNPR--KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           H P+  K    +W    R   +  E +A  +  L   ++ +K  G   + +  + ++   
Sbjct: 551 HRPKVNKLGGSQWAKTKRSVQSKVEDIADDLIKLYAARESEK--GYAFSKDNDLQKEFED 608

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             P+  T  Q  +  +I  DM +   M R+L GDVG GKT VA+ A   A++   Q   +
Sbjct: 609 AFPYVETPDQLRSSNEIKADMEKSKAMDRLLVGDVGFGKTEVAIRAAFKAIQDNKQVAFL 668

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQH++ I    ++  + V +++        +  LE +  G+  +++GTH +  
Sbjct: 669 VPTTILAQQHFDNISDRFKDFPVNVALLSRFQSNTEVKDILEGLKDGKIDLVVGTHRILS 728

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L L+I+DE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S 
Sbjct: 729 KDVEFKDLGLLIIDEEQRFGVKHKERLKELKNNVDVLTLTATPIPRTLHMSMVGVRDLSV 788

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P  R PI+T +  + ++  VI    L+ +  +G + +++  +I +  E+     VE
Sbjct: 789 METPPVNRYPIQTYV--MEQLPSVIREACLREMARDG-QIFYLHNRIGDIDET-----VE 840

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
               L     + I  IHGRMS+     ++  F +    +L+ TT+IE GID+ + + +II
Sbjct: 841 HLQQLIPE--AKIEAIHGRMSENQMSDILYRFLHKQFDILVTTTIIETGIDMPNVNTLII 898

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
           E+A+H+GL+QL+QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF I
Sbjct: 899 EDADHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLEAIRDFTELGSGFKI 958

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  DL  R  G +LG +Q G 
Sbjct: 959 AMRDLSIRGAGNMLGQQQHGF 979


>gi|153950967|ref|YP_001398499.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938413|gb|ABS43154.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 607

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 148/401 (36%), Positives = 223/401 (55%), Gaps = 23/401 (5%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+++PF+ TK Q +A+KDI +D+  K    R++ GDVG GKTLV L   AA +    QA+
Sbjct: 219 LKDLPFALTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLL--GAALMVYPKQAI 276

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA Q Y+  KK+  +   I+ I  G      + K LE+    +A++IIGTHAL
Sbjct: 277 LMAPTSILAYQLYDEAKKFLPDFMNILFIKGGK-----KEKDLEQNIQ-KANLIIGTHAL 330

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               +  Y  +LV++DEQHRFG  QR K   L ++  APH +  +ATPIPRTL +     
Sbjct: 331 IH--LGSYNAVLVMIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLSMMQSEL 388

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           ++ S I + P  +K I T  I      ++ E++K  +++  +   I P +    +  + S
Sbjct: 389 LNFSFIKQMPF-KKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLVSASDKIPYLS 447

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +       H+   + + HG+  D  K+ +++ F++    +L++TTV+EVGI +   S+
Sbjct: 448 LEQAKEYWQSHY-EKVFVTHGK--DKQKDEILERFRD-EGNILLSTTVVEVGISLPRLSM 503

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I  AE  GLA LHQLRGRVGR    S+C L  +  L K   +RL    +T DGF IAE
Sbjct: 504 IVIVGAERLGLATLHQLRGRVGRVGLKSACYL--YTKL-KEIPSRLKEFASTLDGFKIAE 560

Query: 623 EDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
            DLK R  G++L G  Q G  +F        + +LE  +KD
Sbjct: 561 LDLKNRLNGDLLDGFMQHG-NEFKFFDFSKDEKILEEVKKD 600


>gi|57237967|ref|YP_179216.1| transcription-repair coupling factor [Campylobacter jejuni RM1221]
 gi|205355835|ref|ZP_03222604.1| transcription repair coupling factor [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|57166771|gb|AAW35550.1| transcription-repair coupling factor [Campylobacter jejuni RM1221]
 gi|205346269|gb|EDZ32903.1| transcription repair coupling factor [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|315058526|gb|ADT72855.1| Transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 978

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 211/379 (55%), Gaps = 23/379 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q+ A  +ILQD      M R+L GDVG GKT VA+ A+   V++G  A + AP 
Sbjct: 466 FIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPT 525

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L+ QHY+ +KK      I V  +      A +++ L+ +   +A +++GTHAL   S+
Sbjct: 526 TLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALL--SV 583

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKI 448
           +   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR+L   L+S+    +  +
Sbjct: 584 ECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSV--L 641

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
              P  R  ++T +   +   + E I R    L  G + ++I   I   ++   + ++E 
Sbjct: 642 QTPPEDRMDVRTFVKENDDALLKEAIAR---ELRRGGQIFYIHNHIASIEQCK-KHLLEL 697

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F++L       I I+H ++    +E  M  F+N    LL++T+++E GID+ +A+ II+E
Sbjct: 698 FSTLR------ILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVESGIDLPNANTIIVE 751

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIA 621
            ++ FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L++      G ++A
Sbjct: 752 KSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSLESNSFLGAGSILA 811

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G +LG+ QSG
Sbjct: 812 YHDLEIRGGGNLLGVDQSG 830


>gi|327335135|gb|EGE76846.1| transcription-repair coupling factor [Propionibacterium acnes
            HL097PA1]
          Length = 1208

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 198/374 (52%), Gaps = 17/374 (4%)

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L
Sbjct: 652  TPDQLTTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL 711

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             QQH++   +      + V  ++        R+ LE +  G   +++GTH L    +++ 
Sbjct: 712  VQQHFQTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEVEFK 771

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P 
Sbjct: 772  DLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPE 831

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLH 511
             R P+ T   P +   +V+  ++  L+   + ++I  +++  EK  +  R +V       
Sbjct: 832  ERHPVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPE----- 885

Query: 512  EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  
Sbjct: 886  ----ARIVTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLM 941

Query: 572  GLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GL+QLHQLRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+
Sbjct: 942  GLSQLHQLRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLE 1001

Query: 627  QRKEGEILGIKQSG 640
             R  G +LG +QSG
Sbjct: 1002 IRGAGNLLGGEQSG 1015


>gi|170750777|ref|YP_001757037.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657299|gb|ACB26354.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1109

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 144/452 (31%), Positives = 234/452 (51%), Gaps = 16/452 (3%)

Query: 225 RERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKD 283
           R RL  +  +A    L+L   + ++E   P+        ++      F+PT  Q +A+  
Sbjct: 525 RRRLEAEATMARTARLMLEAARARRETEAPVLAPPASEMERFAAGFGFAPTPDQAAAVDA 584

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           ++ D++    M R++ GDVG GKT VAL A+AAA+ +G QA ++AP  +LA+QH E +++
Sbjct: 585 LMADLASGRPMDRLVCGDVGFGKTEVALRALAAAIFSGRQAALIAPTTVLARQHAETLRR 644

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                 + V  ++  +  A  ++    +A G   +++GTHAL    + +  L L ++DE+
Sbjct: 645 RFGRFGVEVAQLSRLVAPAEAKRVKAGLADGTIRLVVGTHALAGGGVAFADLGLTVIDEE 704

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            RFG + +  L + A   HVL +TATPIPRTL    +G   +S +   PA R+P++TV+ 
Sbjct: 705 QRFGAKMKADLRRLADGGHVLTLTATPIPRTLQAALVGLQSLSVLATPPALRQPVRTVVA 764

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
           P +  + V E L      G +++ +CP+IE     +   + ER  +L       I + HG
Sbjct: 765 PFD-AEAVREALIREHRRGGQSFVVCPRIE-----DIAPMAERLRALVPGL--DILVAHG 816

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +     + VM  F  G   +L+AT ++E G+DV  A+ +++  A  FGLAQLHQLRGRV
Sbjct: 817 DLKPSAMDEVMVRFAEGDGDVLLATAIVESGLDVPRANTMLVWEAARFGLAQLHQLRGRV 876

Query: 584 GRGEEISSCILLYHPPLSKNSYT-----RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           GRG+   +  LL  P     +        L  L     GF ++  DL  R  G+++G  Q
Sbjct: 877 GRGQRRGTVHLLSDPAAPPPAAALQRLRALEALDRLGAGFAVSARDLDLRGAGDLVGEDQ 936

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           +G  K +     L+  LL++A   AK    +D
Sbjct: 937 AGHAKLVGLG--LYQHLLQLALTAAKGERAED 966


>gi|29840634|ref|NP_829740.1| transcription-repair coupling factor [Chlamydophila caviae GPIC]
 gi|29834984|gb|AAP05618.1| transcription-repair coupling factor [Chlamydophila caviae GPIC]
          Length = 1085

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 133/389 (34%), Positives = 202/389 (51%), Gaps = 17/389 (4%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G+   K   N P+  T  Q  AI+ I  DM     M R++ GD G GKT V + A   AV
Sbjct: 545 GEEVIKFAENFPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAV 604

Query: 319 EAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             G  Q ++M P  ILA QHYE   +      I + +++    +   +K  E  A G   
Sbjct: 605 CDGHRQVIVMVPTTILANQHYETFSQRMAGLPINIAVLSRFSERKSMKKIFEDTAKGDID 664

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH L   ++++    L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL +
Sbjct: 665 ILIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDFLKERYPKVDCLTVSATPIPRTLYM 724

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE--K 495
           +  G  D+S IT  P  R P+ T ++  N  + +   L+  L  G +AY I  +IE   +
Sbjct: 725 SLSGARDLSLITMPPLDRLPVSTFVLEHNE-ETLSAALRHELLRGGQAYVIHNRIESIFR 783

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  R+++           + IA+ HG+MS  +  S+   FK+    +L+AT +IE GI
Sbjct: 784 LGNTIRTLIPE---------ARIAVAHGQMSPDELASIFQKFKDQEINILVATALIENGI 834

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKN 613
           D+ +A+ I+++ A+ FG+A L+Q++GRVGR    + C  L  +   LS  +  RL  L  
Sbjct: 835 DIPNANTILVDQADKFGMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLEALNK 894

Query: 614 TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
            E   G  IA  DL+ R  G ILG  QSG
Sbjct: 895 QEYGGGMKIALHDLEIRGAGNILGTDQSG 923


>gi|219666201|ref|YP_002456636.1| transcription-repair coupling factor [Desulfitobacterium hafniense
            DCB-2]
 gi|219536461|gb|ACL18200.1| transcription-repair coupling factor [Desulfitobacterium hafniense
            DCB-2]
          Length = 1197

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 131/389 (33%), Positives = 206/389 (52%), Gaps = 25/389 (6%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q+     P+  T  Q   I ++ QDM ++  M R+L GDVG GKT VAL A   AV    
Sbjct: 638  QEFEEKFPYQETPDQMQCIVEVKQDMMRQRPMDRLLCGDVGYGKTEVALRAAFKAVMDSK 697

Query: 323  QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            Q  ++ P  ILAQQH+   ++      + +++++       ++  L+ +  G   I++GT
Sbjct: 698  QVAVLVPTTILAQQHFNTFQERFMGYPVSIQMLSRFRSAKEQKLILQGLKEGSIDIVVGT 757

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L  DSI++  L L+IVDE+ RFGV  + KL        VL ++ATPIPRTL ++ +G 
Sbjct: 758  HKLVSDSIKFKDLGLLIVDEEQRFGVAHKEKLKTLKANVDVLTLSATPIPRTLHMSLVGV 817

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
             D+S I   P  R P++T +    R D V E ++  +  G + +++  ++E     +   
Sbjct: 818  RDLSIIETPPEDRFPVQTYVAEF-RPDVVREAIRREIQRGGQVFFVHNRVE-----DMEQ 871

Query: 503  VVERFNSLHEHFTSSI------AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            VV        HF S +       I HG+MS+ + E  M +F      +L+ TT+IE G+D
Sbjct: 872  VV--------HFLSQLVPEARYGIAHGQMSEKELEQEMLAFLEHESDVLVCTTIIETGLD 923

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN- 613
            + + + +II+ A+  GL QL+QLRGRVGR    +    LY P   L++ +  RL+ ++  
Sbjct: 924  MPNVNTLIIDEADRLGLGQLYQLRGRVGRSNRRAYSYFLYKPQKVLTEVAEKRLAAIREF 983

Query: 614  TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
            TE   G  IA  DL+ R  G ++G +Q G
Sbjct: 984  TEFGSGLKIAMRDLEIRGAGNLIGAQQHG 1012


>gi|203288058|ref|YP_002223073.1| transcription-repair coupling factor [Borrelia recurrentis A1]
 gi|201085278|gb|ACH94852.1| transcription-repair coupling factor [Borrelia recurrentis A1]
          Length = 1125

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 212/376 (56%), Gaps = 13/376 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AI +I QDM     M R+L GDVG GKT VA+ A   AV    Q  I++P
Sbjct: 584 PYDETPDQLTAISEIKQDMMSSKVMDRLLCGDVGFGKTEVAMRAAFKAVMGKKQVAILSP 643

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             IL +QH+   KK  +N  I + +I+  + ++  ++ L  +  G   IIIGTH +    
Sbjct: 644 TTILTEQHFNTFKKRFKNFPIQIAMISRFITKSKEKEILRNLETGNIDIIIGTHKILSKK 703

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I Y  L L+I+DE+ RFGV+++ KL +   +   L+++ATPIPR+L ++ +   DIS + 
Sbjct: 704 ITYKDLGLIIIDEEQRFGVKEKEKLKEIKVSVDSLVLSATPIPRSLHMSLIKLRDISVLK 763

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R  I+T +   + I  +   ++  LS   + +++   I+E    + ++++E+   
Sbjct: 764 TPPQNRIKIETYVEEFSEI-LIKHAIENELSRDGQVFFVHHNIQEL--DSIKAMIEKVVP 820

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 + IA IH +++    E++M  F N + ++L+ATT+IE GID+ +A+ III NA 
Sbjct: 821 Y-----ARIATIHAKLTGEQIENIMQDFINKSYQVLLATTIIENGIDIENANTIIINNAN 875

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEED 624
            FGLAQL+QLRGRVGR  + +    LY  +  L++ +  RL  +    +   GF IA +D
Sbjct: 876 RFGLAQLYQLRGRVGRSSKKAFAYFLYKENSNLNEGAIERLRAISEFSELGAGFQIAMKD 935

Query: 625 LKQRKEGEILGIKQSG 640
           ++ R  G +LG +Q G
Sbjct: 936 MEIRGVGNLLGREQHG 951


>gi|239622522|ref|ZP_04665553.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|239514519|gb|EEQ54386.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
          Length = 943

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 146/407 (35%), Positives = 199/407 (48%), Gaps = 92/407 (22%)

Query: 176 VEALSR-LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            EALS+ +P VLPE + K     K+    AEAF  IH+P     F+    A E L Y+E 
Sbjct: 284 AEALSQSIPDVLPESVRK----AKNLMHRAEAFLAIHDPASTARFK---EAIETLRYEEA 336

Query: 234 LAGQIALLLMRKQFKKEIGIPI-----------NVEGKIAQ------------------- 263
              Q +LL  R+   K    P            +V   +A+                   
Sbjct: 337 FVSQTSLLKSRQHAHKSSAHPCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPDL 396

Query: 264 --------KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
                   + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM 
Sbjct: 397 PNLPNLRDRFIASLPFTLTAGQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAML 456

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN---------------------------- 347
            AV AG QAV++AP  +LA+QHYE I K                                
Sbjct: 457 QAVGAGYQAVLVAPTQVLAEQHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGAST 516

Query: 348 -------TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
                   +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++
Sbjct: 517 VSSSKVTAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVI 576

Query: 401 DEQHRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           DEQHRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKP
Sbjct: 577 DEQHRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKP 636

Query: 458 IKTVIIPINRID-----EVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           I+TV+  +N  D      +   ++  +  G++AY +CP+I+   E N
Sbjct: 637 IRTVV--VNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 681



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 102/193 (52%), Gaps = 2/193 (1%)

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS 
Sbjct: 748 IADRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASC 807

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+
Sbjct: 808 IVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQ 867

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSI 681
            DL+ R  G++LG  QSG    L     + D+ ++  AR  A  +L  DP+L     Q  
Sbjct: 868 ADLEFRGAGDVLGDTQSGGKSSLKLLRVVKDADMIADARTRAGQLLAADPELAG-EVQLA 926

Query: 682 RILLYLYQYNEAF 694
             +L   + NE F
Sbjct: 927 GAVLDFTRGNETF 939


>gi|224438472|ref|ZP_03659396.1| transcription-repair coupling factor [Helicobacter cinaedi CCUG
           18818]
 gi|313144905|ref|ZP_07807098.1| transcription-repair coupling factor [Helicobacter cinaedi CCUG
           18818]
 gi|313129936|gb|EFR47553.1| transcription-repair coupling factor [Helicobacter cinaedi CCUG
           18818]
          Length = 1005

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 129/397 (32%), Positives = 209/397 (52%), Gaps = 21/397 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G+ I+ +            F+ TK QE +IK+I  D+S    M R+L GDVG GKT VA+
Sbjct: 467 GVKIDTDNPKLLHFQSTCGFTLTKDQERSIKEIYADLSSGKVMDRLLSGDVGFGKTEVAI 526

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A+ A + +G QA+++ P  +L+ QH+  ++       I +      +    ++K  E +
Sbjct: 527 NAIYATILSGFQAMMIVPTTLLSAQHFHSLQMRLAPHNIRIARCDRFLKANEKKKLFESL 586

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G+  +++GTHAL     ++  L L++VDE+H+FGV+Q+ K+ +     H+L M+ATPI
Sbjct: 587 EKGEIQVVVGTHALL--GARFKNLGLIVVDEEHKFGVKQKEKIKELCANTHLLSMSATPI 644

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489
           PRTL +       +S +   P  R P++T I   N   + E+I R    +  G + ++I 
Sbjct: 645 PRTLNMALSQIKSLSSLQTPPMARIPVRTFIKTSNNALLKEIILR---EIRRGGQVFYI- 700

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                   +N  S+ +R   L +      IAI+H ++ +   E +M  F N    +L+ T
Sbjct: 701 -------HNNIASIEKRAKELQQILPQIKIAILHSQVENAKSEQIMLDFANNAYNVLLCT 753

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYT 606
           +++E GI + +A+ III  A+ FG+A LHQLRGRVGRG++   C  L      ++  +  
Sbjct: 754 SIVESGIHLPNANTIIIARADRFGIADLHQLRGRVGRGDKQGFCYFLLEDMEQITPEAKK 813

Query: 607 RLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           RLS L+       G  +A  DL+ R  G +LG  QSG
Sbjct: 814 RLSALEKNSYLGSGENLAYYDLEIRGGGNLLGEAQSG 850


>gi|23335795|ref|ZP_00121027.1| COG1200: RecG-like helicase [Bifidobacterium longum DJO10A]
          Length = 947

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 146/407 (35%), Positives = 199/407 (48%), Gaps = 92/407 (22%)

Query: 176 VEALSR-LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            EALS+ +P VLPE + K     K+    AEAF  IH+P     F+    A E L Y+E 
Sbjct: 288 AEALSQSIPDVLPESVRK----AKNLMHRAEAFLAIHDPASTARFK---EAIETLRYEEA 340

Query: 234 LAGQIALLLMRKQFKKEIGIPI-----------NVEGKIAQ------------------- 263
              Q +LL  R+   K    P            +V   +A+                   
Sbjct: 341 FVSQTSLLKSRQHAHKSSAHPCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPDL 400

Query: 264 --------KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
                   + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM 
Sbjct: 401 PNLPNLRDRFIASLPFTLTAGQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAML 460

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN---------------------------- 347
            AV AG QAV++AP  +LA+QHYE I K                                
Sbjct: 461 QAVGAGYQAVLVAPTQVLAEQHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGAST 520

Query: 348 -------TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
                   +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++
Sbjct: 521 VSSSKVTAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVI 580

Query: 401 DEQHRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           DEQHRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKP
Sbjct: 581 DEQHRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKP 640

Query: 458 IKTVIIPINRID-----EVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           I+TV+  +N  D      +   ++  +  G++AY +CP+I+   E N
Sbjct: 641 IRTVV--VNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 685



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 102/193 (52%), Gaps = 2/193 (1%)

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS 
Sbjct: 752 IADRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASC 811

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+
Sbjct: 812 IVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQ 871

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSI 681
            DL+ R  G++LG  QSG    L     + D+ ++  AR  A  +L  DP+L     Q  
Sbjct: 872 ADLEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAGQLLAADPELAG-EVQLA 930

Query: 682 RILLYLYQYNEAF 694
             +L   + NE F
Sbjct: 931 GAVLDFTRGNETF 943


>gi|50842025|ref|YP_055252.1| transcription-repair coupling factor [Propionibacterium acnes
            KPA171202]
 gi|50839627|gb|AAT82294.1| transcription-repair coupling factor [Propionibacterium acnes
            KPA171202]
          Length = 1222

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 199/377 (52%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T  Q + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 663  YVETPDQLTTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 722

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +L QQH++   +      + V  ++        R+ LE +  G   +++GTH L    +
Sbjct: 723  TLLVQQHFQTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEV 782

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I  
Sbjct: 783  EFKDLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIAT 842

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T   P +   +V+  ++  L+   + ++I  +++  EK  +  R +V    
Sbjct: 843  PPEERHPVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPE-- 899

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A
Sbjct: 900  -------ARIVTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRA 952

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
            +  GL+QLHQLRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +
Sbjct: 953  DLMGLSQLHQLRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMK 1012

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 1013 DLEIRGAGNLLGGEQSG 1029


>gi|149193785|ref|ZP_01870883.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
           TB-2]
 gi|149135738|gb|EDM24216.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
           TB-2]
          Length = 588

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 144/392 (36%), Positives = 206/392 (52%), Gaps = 30/392 (7%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           PIN +       + ++PF  T  Q   I +I  D+S+  +  R++ GDVGSGKT+V    
Sbjct: 196 PINAD---PTPFINSLPFKLTNDQLKVINEIKNDLSKPLQARRVIIGDVGSGKTIV---- 248

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           M A      ++ IM P  ILA Q YE  KK+ +     + ++T       ++        
Sbjct: 249 MLATAFMSKKSAIMCPTSILANQIYEEAKKFLEKFNFKITLVT-------QKSKFSEYDI 301

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL----TQKATAPHVLLMTAT 429
             ++++IGTHAL   ++    L  ++VDEQHRFG  QR KL    T K T PH    +AT
Sbjct: 302 QNSNLLIGTHALLYQNLP--TLNTIMVDEQHRFGTNQRAKLEKLTTDKKTLPHYFQFSAT 359

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRT  L     +++S I E P  +K I+T II      E+I  +   +  G +   + 
Sbjct: 360 PIPRTQALIMSSFVNVSLIKELPF-KKDIETKIISKEDFKELINHINRQIHLGNQVIIVY 418

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           P +EE K  +++S+ E      +HF   + + HG+  D +KE ++  F+    K+LI TT
Sbjct: 419 PLVEESKNFDYQSIEEAKEWWLKHF-DGVYVTHGK--DKNKEDILLEFRE-KGKILITTT 474

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVGI +   + I+I  AE  GLA LHQLRGRVGR  +   C L  +   +KN+  RL 
Sbjct: 475 VIEVGISLPKLTTIVIVGAERLGLATLHQLRGRVGRYGQKGYCYLYTN---NKNN-KRLI 530

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSG 640
                 DGF IAE DLK RK G++L G  QSG
Sbjct: 531 EFSKILDGFKIAELDLKFRKSGDLLDGKIQSG 562


>gi|28572737|ref|NP_789517.1| transcription-repair coupling factor [Tropheryma whipplei TW08/27]
 gi|28410870|emb|CAD67255.1| transcription-repair coupling factor [Tropheryma whipplei TW08/27]
          Length = 1248

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 123/373 (32%), Positives = 197/373 (52%), Gaps = 11/373 (2%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            ++ T+ QE  I  +  DM     M RI+ GDVG GKT +A+ A   AV+   Q  ++ P 
Sbjct: 699  YTETRDQEKTIVAVKADMENSKPMDRIISGDVGFGKTEIAMRAAFKAVQDNKQVAVLVPT 758

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QH +   +      + +  ++    ++  +K +  I+ G   I+IGTH L    I
Sbjct: 759  TLLARQHIQTFCERFDKWPVTIASLSRFQSKSEIQKTICGISSGGIDIVIGTHMLLNKKI 818

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            Q+  L L+I+DE+HRFGV  +  + +      +L M+ATPIPRTL ++ +G  +IS ++ 
Sbjct: 819  QFKDLGLLIIDEEHRFGVNHKEAIKKLKIGIDILAMSATPIPRTLEMSLMGIKEISTLST 878

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R PI T + P  R  +VI  ++  +  G + ++I         +    V +R   L
Sbjct: 879  PPENRMPILTHVGPY-RDKQVIAAVRREIIRGGQVFYI-----HNDTATISRVAQRLEQL 932

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + +   H ++++   E  +  F  G   +L+ TT+IE G+D  +A+ III++AE+
Sbjct: 933  IPE--ARVVSAHAKLAERMLEKTVIDFWEGKYDILVCTTIIETGLDNANANTIIIDSAEN 990

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            +GL+QLHQLRGRVGRG + +   L Y   L   +Y RL  +        G  IA +DL+ 
Sbjct: 991  YGLSQLHQLRGRVGRGTKRAYAYLFYTSTLKDTAYKRLEAIARNNHLGAGAQIAMKDLEL 1050

Query: 628  RKEGEILGIKQSG 640
            R  G +LG  QSG
Sbjct: 1051 RGAGSLLGHAQSG 1063


>gi|256852011|ref|ZP_05557398.1| transcription-repair coupling factor [Lactobacillus jensenii
           27-2-CHN]
 gi|260661420|ref|ZP_05862333.1| transcription-repair coupling factor [Lactobacillus jensenii
           115-3-CHN]
 gi|282933683|ref|ZP_06339041.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
 gi|256615423|gb|EEU20613.1| transcription-repair coupling factor [Lactobacillus jensenii
           27-2-CHN]
 gi|260547875|gb|EEX23852.1| transcription-repair coupling factor [Lactobacillus jensenii
           115-3-CHN]
 gi|281302173|gb|EFA94417.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
          Length = 1162

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 136/441 (30%), Positives = 231/441 (52%), Gaps = 21/441 (4%)

Query: 210 HNPR--KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           H P+  K    +W    R   +  E +A  +  L   ++ +K  G   + +  + ++   
Sbjct: 551 HRPKVNKLGGSQWAKTKRSVQSKVEDIADDLIKLYAARESEK--GYAFSKDNDLQKEFED 608

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             P+  T  Q  +  +I  DM +   M R+L GDVG GKT VA+ A   A++   Q   +
Sbjct: 609 AFPYVETPDQLRSSNEIKADMEKSKAMDRLLVGDVGFGKTEVAIRAAFKAIQDNKQVAFL 668

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILAQQH++ I    ++  + V +++        +  LE +  G+  +++GTH +  
Sbjct: 669 VPTTILAQQHFDNISDRFKDFPVNVALLSRFQSNTEVKDILEGLKDGKIDLVVGTHRILS 728

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +++  L L+I+DE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S 
Sbjct: 729 KDVEFKDLGLLIIDEEQRFGVKHKERLKELKNNVDVLTLTATPIPRTLHMSMVGVRDLSV 788

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P  R PI+T +  + ++  VI    L+ +  +G + +++  +I +  E+     VE
Sbjct: 789 METPPVNRYPIQTYV--MEQLPSVIREACLREMARDG-QIFYLHNRIGDIDET-----VE 840

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
               L     + I  IHGRMS+     ++  F +    +L+ TT+IE GID+ + + +II
Sbjct: 841 HLQQLIPE--AKIEAIHGRMSENQMSDILYRFLHKQFDILVTTTIIETGIDMPNVNTLII 898

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
           E+A+H+GL+QL+QLRGR+GR   ++    LY P   L++    RL  +++ TE   GF I
Sbjct: 899 EDADHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLEAIRDFTELGSGFKI 958

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  DL  R  G +LG +Q G 
Sbjct: 959 AMRDLSIRGAGNMLGQQQHGF 979


>gi|146339310|ref|YP_001204358.1| putative transcription repair coupling factor [Bradyrhizobium sp.
           ORS278]
 gi|146192116|emb|CAL76121.1| putative transcription repair coupling factor [Bradyrhizobium sp.
           ORS278]
          Length = 1091

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 145/408 (35%), Positives = 219/408 (53%), Gaps = 18/408 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++ +   P+  T  Q +AI+D+L+D+   + M RI+ GDVG GKT +AL A AA V AG 
Sbjct: 534 ERFVARFPYLVTPDQAAAIEDVLKDLGAGHPMDRIVCGDVGFGKTEIALRAAAATVFAGR 593

Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q  ++ P  +LA QH + F+K++     I V  ++     A  R    ++A G   ++IG
Sbjct: 594 QVALIVPTTVLAAQHVQTFVKRFAP-FGISVGHLSRLSTTADARSTRRQLADGTLKLVIG 652

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T AL  D +++  L LVIVDE+  FG   + +L+      H L M+ATPIPRT+     G
Sbjct: 653 TTALAADDVRFADLGLVIVDEEQHFGAADKARLSALRAGVHALTMSATPIPRTMAGAMAG 712

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIE-RLKVVLSEGKKAYWICPQIEEKKESNF 500
             D+S I   P  R+P+ T + P+  +D  +   L+     G +++ ICP+I+     + 
Sbjct: 713 LRDLSIIATPPVRRRPVLTKVEPL--LDATLSMALRREHRRGGQSFVICPRIK-----DL 765

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             + ER + L       IA+IHGRM   + ++ M  F  G   +L+AT ++E G+D+  A
Sbjct: 766 APMRERLSHLVPEL--GIAMIHGRMPAREIDAEMMRFVAGKADILLATNIVENGLDIPRA 823

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN---TEDG 617
           + I+I  AEHFGL+QLHQLRGRVGRG   +   LL   P    +  RLS L+       G
Sbjct: 824 NTILISGAEHFGLSQLHQLRGRVGRGGIRAYAYLLADTP-GDAAQKRLSALQELHFAGAG 882

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           F I+  DL  R  G++L  +Q+G     +  P L+  LL  A +   H
Sbjct: 883 FQISARDLDLRGAGDLLSEQQAG--HVQVFGPALYQELLSRALQGRPH 928


>gi|332674360|gb|AEE71177.1| transcription-repair coupling factor [Helicobacter pylori 83]
          Length = 999

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 136/401 (33%), Positives = 218/401 (54%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  G   +++GTHA+F    
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVELGLIDVLVGTHAIF--CA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKI 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIHR---ELRRNGQIFYIHNHIASISKVKTKLEELIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 L---------KIAILHSQINAHESEGIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|167755583|ref|ZP_02427710.1| hypothetical protein CLORAM_01097 [Clostridium ramosum DSM 1402]
 gi|167704522|gb|EDS19101.1| hypothetical protein CLORAM_01097 [Clostridium ramosum DSM 1402]
          Length = 1144

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 127/382 (33%), Positives = 209/382 (54%), Gaps = 17/382 (4%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           R+  +  T  Q  ++++I  DM +   M R+L GDVG GKT VAL A   A+    Q   
Sbjct: 597 RSFGYELTVDQLRSVEEIKADMEKSQPMDRLLCGDVGFGKTEVALRAAFKAILGNKQVAF 656

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  IL+ QHY+ +    ++  + + ++        +++ L  +  G   +++GTH + 
Sbjct: 657 LCPTTILSMQHYKTMIARFKDFPVKIALLNRFTSTKEKKQILSDLKLGNIDLLVGTHRIL 716

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              I +  + L+ +DE+ RFGV+Q+ K+ +      VL +TATPIPRTL ++ +G   +S
Sbjct: 717 SKDIVFKDIGLLCIDEEQRFGVKQKEKIKEYRKTIDVLTLTATPIPRTLQMSLMGIRGLS 776

Query: 447 KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           +I   P  R+P++T +I  N   I ++IER    L+   + +++       + S   +V 
Sbjct: 777 QIETPPKNRQPVQTYVIEKNNVLIKQIIER---ELARDGQVFYLY-----NRTSQIANVA 828

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             +N       + +A+ HG+M   + E VM  F N    +L+ TT+IE GID+ +A+ II
Sbjct: 829 --YNITLSVPGARVAVGHGQMDKNELEDVMMRFVNKEFNVLVCTTIIETGIDIPNANTII 886

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619
           +E+A+ FGL+QL+Q++GRVGR    +   LLY+P   L++ +  RL  +K  TE   G+ 
Sbjct: 887 VEDADKFGLSQLYQIKGRVGRSNRGAYAYLLYNPTKVLNEEASKRLKAIKEFTELGSGYK 946

Query: 620 IAEEDLKQRKEGEILGIKQSGM 641
           IA  DL  R  G+ILG  QSG 
Sbjct: 947 IAMRDLAIRGSGDILGGTQSGF 968


>gi|88596440|ref|ZP_01099677.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562699|ref|YP_002344478.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|88191281|gb|EAQ95253.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360405|emb|CAL35202.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315929931|gb|EFV09089.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 978

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 211/379 (55%), Gaps = 23/379 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q+ A  +ILQD      M R+L GDVG GKT VA+ A+   V++G  A + AP 
Sbjct: 466 FIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPT 525

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L+ QHY+ +KK      I V  +      A +++ L+ +   +A +++GTHAL   S+
Sbjct: 526 TLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALL--SV 583

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKI 448
           +   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR+L   L+S+    +  +
Sbjct: 584 ECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSV--L 641

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
              P  R  ++T +   +   + E I R    L  G + ++I   I   ++   + ++E 
Sbjct: 642 QTPPEDRMDVRTFVKENDDALLKEAIAR---ELRRGGQIFYIHNHIASIEQCK-KHLLEL 697

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F++L       I I+H ++    +E  M  F+N    LL++T+++E GID+ +A+ II+E
Sbjct: 698 FSTLR------ILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVESGIDLPNANTIIVE 751

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIA 621
            ++ FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L++      G ++A
Sbjct: 752 KSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSLESNSFLGAGSILA 811

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G +LG+ QSG
Sbjct: 812 YHDLEIRGGGNLLGVDQSG 830


>gi|325846766|ref|ZP_08169681.1| transcription-repair coupling factor [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481524|gb|EGC84565.1| transcription-repair coupling factor [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 1163

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 206/381 (54%), Gaps = 25/381 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T SQ  +I +I  DM     M R+L GDVG GKT VAL A   AV  G Q   + P 
Sbjct: 619 YEETDSQLRSIDEIKDDMEDIKPMDRLLCGDVGYGKTEVALRAAFKAVMDGYQVCFLVPT 678

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA+QH++ +++  ++  I   +++  + +  + K +  +  G+  II+GTH L    I
Sbjct: 679 TILARQHFKTMQERFKDFPIDCAMLSRFVSKKDQEKYIHNLKSGKIDIIVGTHRLLSKDI 738

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++ KL L+I+DE+ RFGV+ + KL +      VL ++ATPIPRTL ++  G  D+S + E
Sbjct: 739 KFKKLGLLIIDEEQRFGVRHKDKLKKLKENIDVLTLSATPIPRTLQMSLTGIRDMSTLDE 798

Query: 451 KPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R+P+ T ++  +    +I+R ++  L    + Y++  +            V   + 
Sbjct: 799 PPERRQPVNTYVLEYDF--SIIKRAIEKELDRDGQVYFVYNR------------VYNIDK 844

Query: 510 LHEHF-----TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           ++ H       + I I HG+MS    E +M+ F +G   +L+ATT+IE G+D+ + + II
Sbjct: 845 IYNHLKLLVPDAKIEIAHGQMSAKSLEKIMEDFVSGEIDILLATTIIETGMDIQNVNTII 904

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619
           + +++  GL+QL+QL+GR+GR    S     Y     L++    RL  +K+  D   G+ 
Sbjct: 905 VYDSDMMGLSQLYQLKGRIGRSSRSSYAYFTYAKGKVLTEIGEKRLKSIKDFSDFGSGYK 964

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           IA  DL+ R  G ILG  QSG
Sbjct: 965 IAMRDLELRGAGNILGESQSG 985


>gi|314926804|gb|EFS90635.1| transcription-repair coupling factor [Propionibacterium acnes
            HL036PA3]
          Length = 1208

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 199/377 (52%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T  Q + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 649  YVETPDQLTTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 708

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +L QQH++   +      + V  ++        R+ LE +  G   +++GTH L    +
Sbjct: 709  TLLVQQHFQTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEV 768

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I  
Sbjct: 769  EFKDLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIAT 828

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T   P +   +V+  ++  L+   + ++I  +++  EK  +  R +V    
Sbjct: 829  PPEERHPVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPE-- 885

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A
Sbjct: 886  -------ARIVTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRA 938

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
            +  GL+QLHQLRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +
Sbjct: 939  DLMGLSQLHQLRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMK 998

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 999  DLEIRGAGNLLGGEQSG 1015


>gi|255994799|ref|ZP_05427934.1| transcription-repair coupling factor [Eubacterium saphenum ATCC
           49989]
 gi|255993512|gb|EEU03601.1| transcription-repair coupling factor [Eubacterium saphenum ATCC
           49989]
          Length = 1092

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 209/385 (54%), Gaps = 15/385 (3%)

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           ++K   +  + PT  Q  AI ++  DM   + M R+L GDVG GKT VA  AM   V AG
Sbjct: 531 SKKFDADFSYIPTDDQLRAIDEVKADMESHSPMDRLLCGDVGYGKTEVAARAMYKCVAAG 590

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q   +AP  IL  QHY+ + K  + T  I+  ++       ++K +E    G+  I+IG
Sbjct: 591 KQVAFLAPTTILVNQHYKTLVKRFEKTAAIIGELSRFRTDVQQKKIIEDAKAGKVDILIG 650

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH +    I +  L L+I+DE+ RFGV Q+ K+ +      VL ++ATPIPRT+ +   G
Sbjct: 651 THRMLSQDIGFQDLGLLIIDEEQRFGVVQKEKIRRLRQNVDVLTLSATPIPRTMHMAISG 710

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNF 500
             D+S IT  P  R P+ T +    + DE++ E ++  ++   + Y +C +I     S+ 
Sbjct: 711 ARDLSLITHPPLERMPVNTFVYI--KSDEIMREAIEREVARKGQVYVVCRRI-----SHM 763

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           + V E+   L +     +  ++G+M++   E  + SF  G   +L+ T +IE GID+ +A
Sbjct: 764 QDVKEKIERLVKGI--RVDTVNGQMNEKYIEDTLSSFIAGEIDVLVCTKIIETGIDIKNA 821

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE--- 615
           + III +A+  G+A+L+QLRGRVGRG   S   LL+  +  LS    +RL+ +K      
Sbjct: 822 NTIIILDADMMGIAELYQLRGRVGRGNRSSFAYLLHNDYKKLSDEQKSRLTAIKEFAKFG 881

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSG 640
               +A +D++ R  G+I+G +Q G
Sbjct: 882 SSLTLAMKDMQIRGAGDIIGKQQHG 906


>gi|322688454|ref|YP_004208188.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           157F]
 gi|320459790|dbj|BAJ70410.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 943

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 146/407 (35%), Positives = 199/407 (48%), Gaps = 92/407 (22%)

Query: 176 VEALSR-LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            EALS+ +P VLPE + K     K+    AEAF  IH+P     F+    A E L Y+E 
Sbjct: 284 AEALSQSIPDVLPESVRK----AKNLMHRAEAFLAIHDPASTARFK---EAIETLRYEEA 336

Query: 234 LAGQIALLLMRKQFKKEIGIPI-----------NVEGKIAQ------------------- 263
              Q +LL  R+   K    P            +V   +A+                   
Sbjct: 337 FVSQTSLLKSRQHAHKSSAHPCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPDL 396

Query: 264 --------KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
                   + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM 
Sbjct: 397 PNLPNLRDRFIASLPFTLTAGQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAML 456

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN---------------------------- 347
            AV AG QAV++AP  +LA+QHYE I K                                
Sbjct: 457 QAVGAGYQAVLVAPTQVLAEQHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGAST 516

Query: 348 -------TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
                   +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++
Sbjct: 517 VSSSKVTAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVI 576

Query: 401 DEQHRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           DEQHRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKP
Sbjct: 577 DEQHRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKP 636

Query: 458 IKTVIIPINRID-----EVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           I+TV+  +N  D      +   ++  +  G++AY +CP+I+   E N
Sbjct: 637 IRTVV--VNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 681



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 103/193 (53%), Gaps = 2/193 (1%)

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS 
Sbjct: 748 IADRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASC 807

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+
Sbjct: 808 IVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQ 867

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSI 681
            DL+ R  G++LG  QSG    L     + D+ ++  AR  A+ +L  DP+L     Q  
Sbjct: 868 ADLEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAEQLLAADPELAG-EVQLA 926

Query: 682 RILLYLYQYNEAF 694
             +L   + NE F
Sbjct: 927 GAVLDFTRGNETF 939


>gi|289428412|ref|ZP_06430098.1| transcription-repair coupling factor [Propionibacterium acnes J165]
 gi|289158384|gb|EFD06601.1| transcription-repair coupling factor [Propionibacterium acnes J165]
          Length = 1198

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 199/377 (52%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T  Q + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 639  YVETPDQLTTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 698

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +L QQH++   +      + V  ++        R+ LE +  G   +++GTH L    +
Sbjct: 699  TLLVQQHFQTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEV 758

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I  
Sbjct: 759  EFKDLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIAT 818

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T   P +   +V+  ++  L+   + ++I  +++  EK  +  R +V    
Sbjct: 819  PPEERHPVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPE-- 875

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A
Sbjct: 876  -------ARIVTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRA 928

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
            +  GL+QLHQLRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +
Sbjct: 929  DLMGLSQLHQLRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMK 988

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 989  DLEIRGAGNLLGGEQSG 1005


>gi|189439950|ref|YP_001955031.1| RecG-like helicase [Bifidobacterium longum DJO10A]
 gi|189428385|gb|ACD98533.1| RecG-like helicase [Bifidobacterium longum DJO10A]
          Length = 943

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 146/407 (35%), Positives = 199/407 (48%), Gaps = 92/407 (22%)

Query: 176 VEALSR-LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            EALS+ +P VLPE + K     K+    AEAF  IH+P     F+    A E L Y+E 
Sbjct: 284 AEALSQSIPDVLPESVRK----AKNLMHRAEAFLAIHDPASTARFK---EAIETLRYEEA 336

Query: 234 LAGQIALLLMRKQFKKEIGIPI-----------NVEGKIAQ------------------- 263
              Q +LL  R+   K    P            +V   +A+                   
Sbjct: 337 FVSQTSLLKSRQHAHKSSAHPCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPDL 396

Query: 264 --------KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
                   + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM 
Sbjct: 397 PNLPNLRDRFIASLPFTLTAGQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAML 456

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN---------------------------- 347
            AV AG QAV++AP  +LA+QHYE I K                                
Sbjct: 457 QAVGAGYQAVLVAPTQVLAEQHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGAST 516

Query: 348 -------TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
                   +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++
Sbjct: 517 VSSSKVTAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVI 576

Query: 401 DEQHRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           DEQHRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKP
Sbjct: 577 DEQHRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKP 636

Query: 458 IKTVIIPINRID-----EVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           I+TV+  +N  D      +   ++  +  G++AY +CP+I+   E N
Sbjct: 637 IRTVV--VNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 681



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 102/193 (52%), Gaps = 2/193 (1%)

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS 
Sbjct: 748 IADRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASC 807

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+
Sbjct: 808 IVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQ 867

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSI 681
            DL+ R  G++LG  QSG    L     + D+ ++  AR  A  +L  DP+L     Q  
Sbjct: 868 ADLEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAGQLLAADPELAG-EVQLA 926

Query: 682 RILLYLYQYNEAF 694
             +L   + NE F
Sbjct: 927 GAVLDFTRGNETF 939


>gi|312133355|ref|YP_004000694.1| recg [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772578|gb|ADQ02066.1| RecG [Bifidobacterium longum subsp. longum BBMN68]
          Length = 943

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 146/407 (35%), Positives = 199/407 (48%), Gaps = 92/407 (22%)

Query: 176 VEALSR-LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            EALS+ +P VLPE + K     K+    AEAF  IH+P     F+    A E L Y+E 
Sbjct: 284 AEALSQSIPDVLPESVRK----AKNLMHRAEAFLAIHDPASTARFK---EAIETLRYEEA 336

Query: 234 LAGQIALLLMRKQFKKEIGIPI-----------NVEGKIAQ------------------- 263
              Q +LL  R+   K    P            +V   +A+                   
Sbjct: 337 FVSQTSLLKSRQHAHKSSAHPCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPDL 396

Query: 264 --------KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
                   + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM 
Sbjct: 397 PNLPNLRDRFIASLPFTLTAGQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAML 456

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN---------------------------- 347
            AV AG QAV++AP  +LA+QHYE I K                                
Sbjct: 457 QAVGAGYQAVLVAPTQVLAEQHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGAST 516

Query: 348 -------TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
                   +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++
Sbjct: 517 VSSSKVTAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVI 576

Query: 401 DEQHRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           DEQHRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKP
Sbjct: 577 DEQHRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKP 636

Query: 458 IKTVIIPINRID-----EVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           I+TV+  +N  D      +   ++  +  G++AY +CP+I+   E N
Sbjct: 637 IRTVV--VNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 681



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 102/193 (52%), Gaps = 2/193 (1%)

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS 
Sbjct: 748 IADRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASC 807

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+
Sbjct: 808 IVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQ 867

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSI 681
            DL+ R  G++LG  QSG    L     + D+ ++  AR  A  +L  DP+L     Q  
Sbjct: 868 ADLEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAGQLLAADPELAG-EVQLA 926

Query: 682 RILLYLYQYNEAF 694
             +L   + NE F
Sbjct: 927 GAVLDFTRGNETF 939


>gi|322690475|ref|YP_004220045.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|320455331|dbj|BAJ65953.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 943

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 146/407 (35%), Positives = 199/407 (48%), Gaps = 92/407 (22%)

Query: 176 VEALSR-LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            EALS+ +P VLPE + K     K+    AEAF  IH+P     F+    A E L Y+E 
Sbjct: 284 AEALSQSIPDVLPESVRK----AKNLMHRAEAFLAIHDPASTARFK---EAIETLRYEEA 336

Query: 234 LAGQIALLLMRKQFKKEIGIPI-----------NVEGKIAQ------------------- 263
              Q +LL  R+   K    P            +V   +A+                   
Sbjct: 337 FVSQTSLLKSRQHAHKSSAHPCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPDL 396

Query: 264 --------KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
                   + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM 
Sbjct: 397 PNLPNLRDRFIASLPFTLTAGQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAML 456

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN---------------------------- 347
            AV AG QAV++AP  +LA+QHYE I K                                
Sbjct: 457 QAVGAGYQAVLVAPTQVLAEQHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGAST 516

Query: 348 -------TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
                   +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++
Sbjct: 517 VSSSKVTAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVI 576

Query: 401 DEQHRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           DEQHRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKP
Sbjct: 577 DEQHRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKP 636

Query: 458 IKTVIIPINRID-----EVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           I+TV+  +N  D      +   ++  +  G++AY +CP+I+   E N
Sbjct: 637 IRTVV--VNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 681



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 102/193 (52%), Gaps = 2/193 (1%)

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS 
Sbjct: 748 IADRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASC 807

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+
Sbjct: 808 IVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQ 867

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSI 681
            DL+ R  G++LG  QSG    L     + D+ ++  AR  A  +L  DP+L     Q  
Sbjct: 868 ADLEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAGQLLAADPELAG-EVQLA 926

Query: 682 RILLYLYQYNEAF 694
             +L   + NE F
Sbjct: 927 GAVLDFTRGNETF 939


>gi|227545780|ref|ZP_03975829.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227213896|gb|EEI81735.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 947

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 146/407 (35%), Positives = 199/407 (48%), Gaps = 92/407 (22%)

Query: 176 VEALSR-LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            EALS+ +P VLPE + K     K+    AEAF  IH+P     F+    A E L Y+E 
Sbjct: 288 AEALSQSIPDVLPESVRK----AKNLMHRAEAFLAIHDPASTARFK---EAIETLRYEEA 340

Query: 234 LAGQIALLLMRKQFKKEIGIPI-----------NVEGKIAQ------------------- 263
              Q +LL  R+   K    P            +V   +A+                   
Sbjct: 341 FVSQTSLLKSRQHAHKSSAHPCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPDL 400

Query: 264 --------KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
                   + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM 
Sbjct: 401 PNLPNLRDRFIASLPFTLTAGQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAML 460

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN---------------------------- 347
            AV AG QAV++AP  +LA+QHYE I K                                
Sbjct: 461 QAVGAGYQAVLVAPTQVLAEQHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGAST 520

Query: 348 -------TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
                   +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++
Sbjct: 521 VSSSKVTAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVI 580

Query: 401 DEQHRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           DEQHRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKP
Sbjct: 581 DEQHRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKP 640

Query: 458 IKTVIIPINRID-----EVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           I+TV+  +N  D      +   ++  +  G++AY +CP+I+   E N
Sbjct: 641 IRTVV--VNEADAATMGRMFAHIRARVDTGERAYIVCPRIDADDEEN 685



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 103/193 (53%), Gaps = 2/193 (1%)

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS 
Sbjct: 752 IADRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASC 811

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+
Sbjct: 812 IVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQ 871

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSI 681
            DL+ R  G++LG  QSG    L     + D+ ++  AR  A+ +L  DP+L     Q  
Sbjct: 872 ADLEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAEQLLAADPELAG-EVQLA 930

Query: 682 RILLYLYQYNEAF 694
             +L   + NE F
Sbjct: 931 GAVLDFTRGNETF 943


>gi|237734333|ref|ZP_04564814.1| transcription-repair coupling factor [Mollicutes bacterium D7]
 gi|229382563|gb|EEO32654.1| transcription-repair coupling factor [Coprobacillus sp. D7]
          Length = 1144

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 127/382 (33%), Positives = 209/382 (54%), Gaps = 17/382 (4%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           R+  +  T  Q  ++++I  DM +   M R+L GDVG GKT VAL A   A+    Q   
Sbjct: 597 RSFGYELTVDQLRSVEEIKADMEKSQPMDRLLCGDVGFGKTEVALRAAFKAILGNKQVAF 656

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  IL+ QHY+ +    ++  + + ++        +++ L  +  G   +++GTH + 
Sbjct: 657 LCPTTILSMQHYKTMIARFKDFPVKIALLNRFTSTKEKKQILSDLKLGNIDLLVGTHRIL 716

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              I +  + L+ +DE+ RFGV+Q+ K+ +      VL +TATPIPRTL ++ +G   +S
Sbjct: 717 SKDIVFKDIGLLCIDEEQRFGVKQKEKIKEYRKTIDVLTLTATPIPRTLQMSLMGIRGLS 776

Query: 447 KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           +I   P  R+P++T +I  N   I ++IER    L+   + +++       + S   +V 
Sbjct: 777 QIETPPKNRQPVQTYVIEKNNVLIKQIIER---ELARDGQVFYLY-----NRTSQIANVA 828

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             +N       + +A+ HG+M   + E VM  F N    +L+ TT+IE GID+ +A+ II
Sbjct: 829 --YNITLSVPGARVAVGHGQMDKNELEDVMMRFVNKEFNVLVCTTIIETGIDIPNANTII 886

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFL 619
           +E+A+ FGL+QL+Q++GRVGR    +   LLY+P   L++ +  RL  +K  TE   G+ 
Sbjct: 887 VEDADKFGLSQLYQIKGRVGRSNRGAYAYLLYNPTKVLNEEASKRLKAIKEFTELGSGYK 946

Query: 620 IAEEDLKQRKEGEILGIKQSGM 641
           IA  DL  R  G+ILG  QSG 
Sbjct: 947 IAMRDLAIRGSGDILGGTQSGF 968


>gi|23464930|ref|NP_695533.1| ATP-dependent DNA helicase [Bifidobacterium longum NCC2705]
 gi|23325524|gb|AAN24169.1| ATP-dependent DNA helicase [Bifidobacterium longum NCC2705]
          Length = 947

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 146/407 (35%), Positives = 199/407 (48%), Gaps = 92/407 (22%)

Query: 176 VEALSR-LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            EALS+ +P VLPE + K     K+    AEAF  IH+P     F+    A E L Y+E 
Sbjct: 288 AEALSQSIPDVLPESVRK----AKNLMHRAEAFLAIHDPASTARFK---EAIETLRYEEA 340

Query: 234 LAGQIALLLMRKQFKKEIGIPI-----------NVEGKIAQ------------------- 263
              Q +LL  R+   K    P            +V   +A+                   
Sbjct: 341 FVSQTSLLKSRQHAHKSSAHPCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPDL 400

Query: 264 --------KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
                   + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM 
Sbjct: 401 PNLPNLRDRFIASLPFTLTAGQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAML 460

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN---------------------------- 347
            AV AG QAV++AP  +LA+QHYE I K                                
Sbjct: 461 QAVGAGYQAVLVAPTQVLAEQHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGAST 520

Query: 348 -------TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
                   +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++
Sbjct: 521 VSSSKVTAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVI 580

Query: 401 DEQHRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           DEQHRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKP
Sbjct: 581 DEQHRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKP 640

Query: 458 IKTVIIPINRID-----EVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           I+TV+  +N  D      +   ++  +  G++AY +CP+I+   E N
Sbjct: 641 IRTVV--VNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 685



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 102/193 (52%), Gaps = 2/193 (1%)

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS 
Sbjct: 752 IADRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASC 811

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+
Sbjct: 812 IVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQ 871

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLTSVRGQSI 681
            DL+ R  G++LG  QSG    L     + D+ ++  AR  A  +L  DP+L     Q  
Sbjct: 872 ADLEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAGQLLAADPELAG-EVQLA 930

Query: 682 RILLYLYQYNEAF 694
             +L   + NE F
Sbjct: 931 GAVLDFTRGNETF 943


>gi|289424265|ref|ZP_06426048.1| transcription-repair coupling factor [Propionibacterium acnes SK187]
 gi|289154962|gb|EFD03644.1| transcription-repair coupling factor [Propionibacterium acnes SK187]
          Length = 1198

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 199/377 (52%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T  Q + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 639  YVETPDQLTTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 698

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +L QQH++   +      + V  ++        R+ LE +  G   +++GTH L    +
Sbjct: 699  TLLVQQHFQTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEV 758

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I  
Sbjct: 759  EFKDLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIAT 818

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T   P +   +V+  ++  L+   + ++I  +++  EK  +  R +V    
Sbjct: 819  PPEERHPVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPE-- 875

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A
Sbjct: 876  -------ARIVTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRA 928

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
            +  GL+QLHQLRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +
Sbjct: 929  DLMGLSQLHQLRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMK 988

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 989  DLEIRGAGNLLGGEQSG 1005


>gi|313765341|gb|EFS36705.1| transcription-repair coupling factor [Propionibacterium acnes
            HL013PA1]
 gi|313806696|gb|EFS45203.1| transcription-repair coupling factor [Propionibacterium acnes
            HL087PA2]
 gi|313814596|gb|EFS52310.1| transcription-repair coupling factor [Propionibacterium acnes
            HL025PA1]
 gi|313815252|gb|EFS52966.1| transcription-repair coupling factor [Propionibacterium acnes
            HL059PA1]
 gi|313817239|gb|EFS54953.1| transcription-repair coupling factor [Propionibacterium acnes
            HL046PA2]
 gi|313821699|gb|EFS59413.1| transcription-repair coupling factor [Propionibacterium acnes
            HL036PA1]
 gi|313824410|gb|EFS62124.1| transcription-repair coupling factor [Propionibacterium acnes
            HL036PA2]
 gi|313826767|gb|EFS64481.1| transcription-repair coupling factor [Propionibacterium acnes
            HL063PA1]
 gi|313828557|gb|EFS66271.1| transcription-repair coupling factor [Propionibacterium acnes
            HL063PA2]
 gi|314916016|gb|EFS79847.1| transcription-repair coupling factor [Propionibacterium acnes
            HL005PA4]
 gi|314916921|gb|EFS80752.1| transcription-repair coupling factor [Propionibacterium acnes
            HL050PA1]
 gi|314921562|gb|EFS85393.1| transcription-repair coupling factor [Propionibacterium acnes
            HL050PA3]
 gi|314931114|gb|EFS94945.1| transcription-repair coupling factor [Propionibacterium acnes
            HL067PA1]
 gi|314954829|gb|EFS99235.1| transcription-repair coupling factor [Propionibacterium acnes
            HL027PA1]
 gi|314958995|gb|EFT03097.1| transcription-repair coupling factor [Propionibacterium acnes
            HL002PA1]
 gi|314961290|gb|EFT05391.1| transcription-repair coupling factor [Propionibacterium acnes
            HL002PA2]
 gi|314980484|gb|EFT24578.1| transcription-repair coupling factor [Propionibacterium acnes
            HL072PA2]
 gi|315086378|gb|EFT58354.1| transcription-repair coupling factor [Propionibacterium acnes
            HL002PA3]
 gi|315087626|gb|EFT59602.1| transcription-repair coupling factor [Propionibacterium acnes
            HL072PA1]
 gi|315099738|gb|EFT71714.1| transcription-repair coupling factor [Propionibacterium acnes
            HL059PA2]
 gi|315101957|gb|EFT73933.1| transcription-repair coupling factor [Propionibacterium acnes
            HL046PA1]
 gi|315106536|gb|EFT78512.1| transcription-repair coupling factor [Propionibacterium acnes
            HL030PA1]
 gi|315110324|gb|EFT82300.1| transcription-repair coupling factor [Propionibacterium acnes
            HL030PA2]
 gi|327333610|gb|EGE75330.1| transcription-repair coupling factor [Propionibacterium acnes
            HL096PA3]
 gi|327445362|gb|EGE92016.1| transcription-repair coupling factor [Propionibacterium acnes
            HL013PA2]
 gi|327454831|gb|EGF01486.1| transcription-repair coupling factor [Propionibacterium acnes
            HL087PA3]
 gi|327455689|gb|EGF02344.1| transcription-repair coupling factor [Propionibacterium acnes
            HL083PA2]
 gi|328755887|gb|EGF69503.1| transcription-repair coupling factor [Propionibacterium acnes
            HL087PA1]
 gi|328756670|gb|EGF70286.1| transcription-repair coupling factor [Propionibacterium acnes
            HL025PA2]
          Length = 1208

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 199/377 (52%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T  Q + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 649  YVETPDQLTTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 708

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +L QQH++   +      + V  ++        R+ LE +  G   +++GTH L    +
Sbjct: 709  TLLVQQHFQTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEV 768

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I  
Sbjct: 769  EFKDLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIAT 828

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T   P +   +V+  ++  L+   + ++I  +++  EK  +  R +V    
Sbjct: 829  PPEERHPVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPE-- 885

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A
Sbjct: 886  -------ARIVTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRA 938

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
            +  GL+QLHQLRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +
Sbjct: 939  DLMGLSQLHQLRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMK 998

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 999  DLEIRGAGNLLGGEQSG 1015


>gi|282882197|ref|ZP_06290836.1| transcription-repair coupling factor [Peptoniphilus lacrimalis
           315-B]
 gi|281297962|gb|EFA90419.1| transcription-repair coupling factor [Peptoniphilus lacrimalis
           315-B]
          Length = 1157

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 137/435 (31%), Positives = 224/435 (51%), Gaps = 21/435 (4%)

Query: 214 KAKDFEWTSPARE-RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
           K    EW    R+ + + D++    I L   R+    + G   + +    ++      + 
Sbjct: 561 KLNSIEWNKTKRKAKKSIDDMADDLIKLYAARES---KNGFKFSKDSSFQREFEDAFIYE 617

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q  + ++I +DM + + M R+L  DVG GKT VAL A   A+  G Q   + P  I
Sbjct: 618 ETDGQLLSSEEIKKDMEEAHPMDRLLCADVGYGKTEVALRAAFKAILDGKQVAFLVPTTI 677

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LAQQHY  + +  ++  + V I++    +  +++ +E++  G   I++GTH L    + +
Sbjct: 678 LAQQHYNIMVERFKDFPVEVGILSRFRTKKEQKETIEKLKAGIVDIVVGTHRLLSKDVVF 737

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             L L+I+DE+ RFGV+ + KL         L ++ATPIPRTL ++ +G  D+S I E P
Sbjct: 738 KDLGLLIIDEEQRFGVRHKEKLKMLKENIDTLTLSATPIPRTLQMSMIGIRDMSVIEEPP 797

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSL 510
             R P+KT ++  N +  V E +   +  G + Y++  ++   E K    R +V      
Sbjct: 798 EERFPVKTYVLEYNPL-MVREAILREVERGGQVYFVYNRVANMEYKLQELRELVPEV--- 853

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 S  + +G+M++ D E  M SF  G   +L+ +T+IE G+DV +A+ +II ++  
Sbjct: 854 ------SFVMANGQMNEKDLEDTMLSFLRGDVDVLLCSTIIETGMDVQNANTMIITDSNR 907

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEEDL 625
            GL+QL+QLRGR+GR   ++     Y     +S+ +  RL  +K  TE   GF IA  DL
Sbjct: 908 LGLSQLYQLRGRIGRSSRVAYAYFTYEKDVSISEIAQKRLKTIKEFTEFGSGFKIALRDL 967

Query: 626 KQRKEGEILGIKQSG 640
           + R  G ILG KQ G
Sbjct: 968 EIRGSGSILGSKQHG 982


>gi|314969382|gb|EFT13480.1| transcription-repair coupling factor [Propionibacterium acnes
            HL037PA1]
          Length = 1208

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 198/374 (52%), Gaps = 17/374 (4%)

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L
Sbjct: 652  TPDQLTTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL 711

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             QQH++   +      + V  ++        R+ LE +  G   +++GTH L    +++ 
Sbjct: 712  VQQHFQTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEVEFK 771

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P 
Sbjct: 772  DLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPE 831

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLH 511
             R P+ T   P +   +V+  ++  L+   + ++I  +++  EK  +  R +V       
Sbjct: 832  ERHPVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPE----- 885

Query: 512  EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  
Sbjct: 886  ----ARIVTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLM 941

Query: 572  GLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GL+QLHQLRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+
Sbjct: 942  GLSQLHQLRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLE 1001

Query: 627  QRKEGEILGIKQSG 640
             R  G +LG +QSG
Sbjct: 1002 IRGAGNLLGGEQSG 1015


>gi|313792864|gb|EFS40931.1| transcription-repair coupling factor [Propionibacterium acnes
            HL110PA1]
 gi|313802684|gb|EFS43906.1| transcription-repair coupling factor [Propionibacterium acnes
            HL110PA2]
 gi|313840319|gb|EFS78033.1| transcription-repair coupling factor [Propionibacterium acnes
            HL086PA1]
 gi|314964282|gb|EFT08382.1| transcription-repair coupling factor [Propionibacterium acnes
            HL082PA1]
 gi|315078702|gb|EFT50733.1| transcription-repair coupling factor [Propionibacterium acnes
            HL053PA2]
 gi|315081837|gb|EFT53813.1| transcription-repair coupling factor [Propionibacterium acnes
            HL078PA1]
 gi|327456823|gb|EGF03478.1| transcription-repair coupling factor [Propionibacterium acnes
            HL092PA1]
          Length = 1208

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 199/377 (52%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T  Q + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 649  YVETPDQLTTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 708

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +L QQH++   +      + V  ++        R+ LE +  G   +++GTH L    +
Sbjct: 709  TLLVQQHFQTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEV 768

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I  
Sbjct: 769  EFKDLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIAT 828

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T   P +   +V+  ++  L+   + ++I  +++  EK  +  R +V    
Sbjct: 829  PPEERHPVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPE-- 885

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A
Sbjct: 886  -------ARIVTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRA 938

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
            +  GL+QLHQLRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +
Sbjct: 939  DLMGLSQLHQLRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMK 998

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 999  DLEIRGAGNLLGGEQSG 1015


>gi|15612523|ref|NP_224176.1| transcription-repair coupling factor [Helicobacter pylori J99]
 gi|7531157|sp|Q9ZJ57|MFD_HELPJ RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|4156075|gb|AAD07030.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
          Length = 1001

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 135/401 (33%), Positives = 216/401 (53%), Gaps = 26/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISRDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E +K   +N  + V  +   +  + + K L+ +  G   ++IGTHA+     
Sbjct: 543 TLLAHQHFETLKARFENFGVKVARLDRYIKTSEKSKLLKAVELGLVDVLIGTHAIL--GT 600

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L++VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 601 KFKNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKT 660

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 661 PPTDRKPSRTFLKEKNDELLKEIIYR---ELRRNGQIFYIHNHIASISKVKTKLEDLIPK 717

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 718 L---------KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 768

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 769 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 828

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 829 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 869


>gi|319943635|ref|ZP_08017916.1| transcription-repair coupling factor [Lautropia mirabilis ATCC 51599]
 gi|319742868|gb|EFV95274.1| transcription-repair coupling factor [Lautropia mirabilis ATCC 51599]
          Length = 1264

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 135/379 (35%), Positives = 200/379 (52%), Gaps = 21/379 (5%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q++AI  ++QD+     M R++ GDVG GKT VAL A   A   G Q  ++ P 
Sbjct: 688  FEETPDQQAAIHAVVQDLIAPKPMDRLVCGDVGFGKTEVALRAAYVAASTGRQVAVLTPT 747

Query: 331  GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH++ F  +++     + E+      ++ R   LE I  G+  I+IGTH L    
Sbjct: 748  TLLAEQHFQTFNDRFSSFPLNVAELSRFGTAKSTR-NTLEGIESGKIDIVIGTHKLLSKD 806

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +++  L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I 
Sbjct: 807  VKFRDLGLVIIDEEHRFGVRQKEALKNLRAEIDVLTLTATPIPRTLAMSLEGIRDFSVIA 866

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI---CPQIEEKKESNFRSVVER 506
              P  R  I+T  +       + E +   L  G + Y++      IE +++     V E 
Sbjct: 867  TAPQKRLAIRT-FVRKETGGTIREAMLRELKRGGQVYFLHNEVGTIENRRQMLAELVPE- 924

Query: 507  FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                     + I + HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+ 
Sbjct: 925  ---------ARIEVAHGQMPERELERVMRDFHQQRFNVLLCTTIIETGIDVPTANTIIMH 975

Query: 567  NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621
             A+ FGLAQLHQLRGRVGR    +   LL      ++K++  RL  ++  E+   GF ++
Sbjct: 976  RADKFGLAQLHQLRGRVGRSHHQAYAYLLIPDEEAITKDATKRLEAIQMMEELGAGFFLS 1035

Query: 622  EEDLKQRKEGEILGIKQSG 640
              DL+ R  GE+LG  QSG
Sbjct: 1036 MHDLEIRGAGEVLGDNQSG 1054


>gi|282852620|ref|ZP_06261962.1| transcription-repair coupling factor [Lactobacillus gasseri 224-1]
 gi|282556362|gb|EFB61982.1| transcription-repair coupling factor [Lactobacillus gasseri 224-1]
          Length = 935

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 124/383 (32%), Positives = 207/383 (54%), Gaps = 19/383 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    +   +  E +A  +  L  +++ +K  G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKKRVQSKVEDIADDLIELYAKRESEK--GFAFSPDDDLQKEFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM     M R+L GDVG GKT VAL A   A+  G Q   +AP  ILAQQH+
Sbjct: 621 RSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E ++   +N  +   +++     A  +  +E + +G+  +++GTH L    +++  L L+
Sbjct: 681 ETMQDRFKNFPVNCALLSRFQTPAEVKAIIEGVKNGKIDMVVGTHRLLSKDVKFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +T +  +  +  V+   + VL E K+    +++  +I+     +   VV R   L     
Sbjct: 801 QTYV--MEEMPSVVR--EAVLREMKRNGQVFFLHNRID-----DIDKVVSRLEELIPE-- 849

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +I+ENA+H+GL+Q
Sbjct: 850 AKIEYIHGRMSENQMEDIMYRFSRNEFDILVTTTIIETGVDMPNVNTMIVENADHYGLSQ 909

Query: 576 LHQLRGRVGRGEEISS---CILL 595
           L+QLRGR+GR   ++    CI L
Sbjct: 910 LYQLRGRIGRSARLAYAYFCISL 932


>gi|189346300|ref|YP_001942829.1| transcription-repair coupling factor [Chlorobium limicola DSM 245]
 gi|189340447|gb|ACD89850.1| transcription-repair coupling factor [Chlorobium limicola DSM 245]
          Length = 1116

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 127/380 (33%), Positives = 208/380 (54%), Gaps = 21/380 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q  AI+++  DM + + M R++ GD G GKT +A+ A   AVE+  Q  I+ P 
Sbjct: 538 FEETPDQLKAIEEVKADMQKPHPMDRLICGDAGFGKTEIAMRAAFKAVESRKQVAILTPT 597

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH E  ++   N  + + +++  +P+  + + +E+I +G   I+IGTH L    +
Sbjct: 598 TILAHQHLESFERRFANFPVSITVLSRFIPKKEQLERIEKIENGAIDIVIGTHRLVSKDV 657

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+I+DE+  FGV+ + KL         L M+ATPIPRTL  + LG  D+S ++ 
Sbjct: 658 RFRDLGLLIIDEEQHFGVEVKEKLRVSHPEVDTLTMSATPIPRTLQFSMLGARDLSIVST 717

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIE--EKKESNFRSVVER 506
            P  R+P++T    I+  D V+ +L +   +    + +++  +I   E+ +   R +V  
Sbjct: 718 PPKNRQPVET---SISDYDPVLIQLAIQREIQRDGQVFFLHNRISGLEEIQHILRELVP- 773

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                    + I   HG+M   + E VM  F      +LI+T++I  G+D+ +A+ III 
Sbjct: 774 --------YARIVYAHGQMPSKELEKVMMDFMQKEVDVLISTSIIGSGLDISNANTIIIN 825

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGLA L+QLRGRVGR E  + C ++  P   L + +  RL+V+++  +   GF +A
Sbjct: 826 RADMFGLADLYQLRGRVGRSERKAFCYMIAPPIHTLKREAVQRLAVIESFTELGAGFTVA 885

Query: 622 EEDLKQRKEGEILGIKQSGM 641
             DL  R  G +LG +QSG 
Sbjct: 886 LRDLDIRGAGNLLGAEQSGF 905


>gi|314987497|gb|EFT31588.1| transcription-repair coupling factor [Propionibacterium acnes
            HL005PA2]
 gi|314989037|gb|EFT33128.1| transcription-repair coupling factor [Propionibacterium acnes
            HL005PA3]
 gi|315082669|gb|EFT54645.1| transcription-repair coupling factor [Propionibacterium acnes
            HL027PA2]
 gi|328758609|gb|EGF72225.1| transcription-repair coupling factor [Propionibacterium acnes
            HL020PA1]
          Length = 1208

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 199/377 (52%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T  Q + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 649  YVETPDQLTTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 708

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +L QQH++   +      + V  ++        R+ LE +  G   +++GTH L    +
Sbjct: 709  TLLVQQHFQTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEV 768

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I  
Sbjct: 769  EFKDLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIAT 828

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T   P +   +V+  ++  L+   + ++I  +++  EK  +  R +V    
Sbjct: 829  PPEERHPVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPE-- 885

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A
Sbjct: 886  -------ARIVTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRA 938

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
            +  GL+QLHQLRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +
Sbjct: 939  DLMGLSQLHQLRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMK 998

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 999  DLEIRGAGNLLGGEQSG 1015


>gi|312194532|ref|YP_004014593.1| transcription-repair coupling factor [Frankia sp. EuI1c]
 gi|311225868|gb|ADP78723.1| transcription-repair coupling factor [Frankia sp. EuI1c]
          Length = 1215

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 214/378 (56%), Gaps = 17/378 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF  T  Q SAI ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 653  PFRETPDQLSAIDEVKRDMERAVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 712

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L QQH++   +      +IV+ ++       ++  L  +A G   ++IGTH L  + 
Sbjct: 713  TTLLVQQHFQTFSERYAAFPVIVKAMSRFNTATEQKAVLAGLADGTVDVVIGTHRLLSNE 772

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
             ++  L LVIVDE+ RFGV+ +  L +  TA  VL M+ATPIPRTL ++  G  ++S I 
Sbjct: 773  TRFKDLGLVIVDEEQRFGVEHKEHLKKMRTAVDVLTMSATPIPRTLEMSITGIRELSTID 832

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
              P  R P+ T + P ++        + +L EG + ++I  ++E  ++  +  R +V   
Sbjct: 833  TPPEERHPVLTSVSPYDQRQVAAAIRRELLREG-QVFFIHNRVESIDRAAARLRELVPE- 890

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                    + IA  HG++S+   E VM SF      +L+ TT++E G+D+ +A+ +I+E 
Sbjct: 891  --------ARIATAHGQLSEDVLEKVMVSFWERKFDVLVCTTIVESGLDISNANTLIVER 942

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622
            A++FGL+QLHQLRGRVGRG E +    LY P  PL++ ++ RL+ +    D   G  +A 
Sbjct: 943  ADNFGLSQLHQLRGRVGRGRERAYAYFLYPPDRPLTETAHDRLATIALNTDLGAGMAVAM 1002

Query: 623  EDLKQRKEGEILGIKQSG 640
            +DL+ R  G +LG +QSG
Sbjct: 1003 KDLEIRGAGNLLGGEQSG 1020


>gi|308064333|gb|ADO06220.1| transcription-repair coupling factor [Helicobacter pylori Sat464]
          Length = 999

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 136/401 (33%), Positives = 218/401 (54%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  G   +++GTHA+F    
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVELGLIDVLVGTHAIF--CA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKI 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIHR---ELRRNGQIFYIHNHIASISKVKTKLEELIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 LK---------IAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|332674949|gb|AEE71765.1| transcription-repair-coupling factor [Propionibacterium acnes 266]
          Length = 1222

 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 199/377 (52%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T  Q + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 663  YVETPDQLTTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 722

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +L QQH++   +      + V  ++        R+ LE +  G   +++GTH L    +
Sbjct: 723  TLLVQQHFQTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEV 782

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I  
Sbjct: 783  EFKDLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIAT 842

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T   P +   +V+  ++  L+   + ++I  +++  EK  +  R +V    
Sbjct: 843  PPEERHPVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPE-- 899

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A
Sbjct: 900  -------ARIVTAHGQMNEKQLEQIMVDFWERHADVLVCTTIVESGIDISTANTLLIDRA 952

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
            +  GL+QLHQLRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +
Sbjct: 953  DLMGLSQLHQLRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMK 1012

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 1013 DLEIRGAGNLLGGEQSG 1029


>gi|261838840|gb|ACX98606.1| transcription-repair coupling factor [Helicobacter pylori 51]
          Length = 999

 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 135/401 (33%), Positives = 218/401 (54%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTNDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  G   +++GTHA+F    
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVELGLVDVLVGTHAIF--CA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++ KL LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKKLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKI 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIHR---ELRRNGQIFYIHNHIASISKVKTKLEDLIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ I+I+
Sbjct: 716 LK---------IAILHSQINAHESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIVID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIENQKSLNEQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|228470004|ref|ZP_04054920.1| transcription-repair coupling factor [Porphyromonas uenonis 60-3]
 gi|228308385|gb|EEK17223.1| transcription-repair coupling factor [Porphyromonas uenonis 60-3]
          Length = 1114

 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 132/410 (32%), Positives = 212/410 (51%), Gaps = 18/410 (4%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           IAL   RK+   + G   + +  +  ++  +  +  T  Q  AI+ I  DM     M R+
Sbjct: 518 IALYAARKE---QPGFAFSPDSYLQHEMEASFAYEETPDQLKAIEQIKADMESNRPMDRL 574

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA+ A   AV    Q  ++ P  ILA QHY+   +  +     +E ++ 
Sbjct: 575 VCGDVGFGKTEVAIRAAFKAVADSKQVAVLVPTTILAYQHYQTFSQRLEGLPCRIEYLSR 634

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                  +  L  +A GQ  I+IGTH L    + +  L L+I+DE+ +FGV+ + +L + 
Sbjct: 635 AKSDKQTKAILADLAEGQVDILIGTHRLLSKGVAFKSLGLLIIDEEQKFGVKAKEQLRKL 694

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                 L ++ATPIPRTL  + +G  D+S I   P  R+P+ T +I  ++ + + + +  
Sbjct: 695 QVNVDTLTLSATPIPRTLQFSLMGARDLSNINTPPRNRQPVTTRLIRWSQ-ETIADAIGY 753

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+   + +++  +IE        S+      + E      IAI HGR++  + E ++  
Sbjct: 754 ELARHGQVFFVHNRIE--------SIHGVAGQIQECVPGIRIAIAHGRLTPSETERILLD 805

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F      LL+ATT+IE GID+   + III +A  +GL+ LHQLRGRVGRG + + C L+ 
Sbjct: 806 FAERKYDLLLATTIIENGIDMPSVNTIIINSAHRYGLSDLHQLRGRVGRGSQRAYCYLIT 865

Query: 597 HP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
            P   L++ +  R+  +++  D   G  IA +DL  R  G ILG +QSG 
Sbjct: 866 PPLGTLTEAAARRVKAIESLSDLGSGMRIALQDLDIRGAGNILGTEQSGF 915


>gi|306845910|ref|ZP_07478478.1| transcription-repair coupling factor [Brucella sp. BO1]
 gi|306273802|gb|EFM55640.1| transcription-repair coupling factor [Brucella sp. BO1]
          Length = 1170

 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 229/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++Q 
Sbjct: 589 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIEAVADDLAQG 644

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q   + P  +L++QH++          I 
Sbjct: 645 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAAVVPTTLLSRQHFKTFSNRFHGLPIN 704

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV
Sbjct: 705 VAHASRLVGAKELAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGV 761

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 762 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 821

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M
Sbjct: 822 VIRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQM 870

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 871 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 930

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 931 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 988

Query: 639 SG 640
           SG
Sbjct: 989 SG 990


>gi|326385186|ref|ZP_08206853.1| transcription-repair coupling factor [Gordonia neofelifaecis NRRL
            B-59395]
 gi|326196090|gb|EGD53297.1| transcription-repair coupling factor [Gordonia neofelifaecis NRRL
            B-59395]
          Length = 1193

 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 203/375 (54%), Gaps = 13/375 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            ++ T  Q + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 637  YTETVDQMTVIGEVKSDMEKPVPMDRVVVGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 696

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             ILA QH +   +      + V  ++     A  ++ + ++A G+  ++IGTH L Q  I
Sbjct: 697  TILAGQHLQTFTERMDGFPVKVRGLSRFTDPAESKEIIAQMASGEVDVVIGTHRLLQTGI 756

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 757  RWKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILT 816

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R P+ T +   +         + +L +G+  Y     +  +  +  ++     N +
Sbjct: 817  PPEERHPVLTYVGAYSDKQVAASIRRELLRDGQVFY-----VHNRVSTIDKTAKHIANMV 871

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             E   + + + HG+M +   E  +  F +    +L+ TT+IE G+D+ +A+ +I++ AE+
Sbjct: 872  PE---ARVVVAHGQMGEEQLERTVQGFWDREYDVLVCTTIIETGLDISNANTLIVDRAEN 928

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
            FGL+QLHQLRGRVGR  E     LLY P  PL++ +Y RL+ +    +   G  +A +DL
Sbjct: 929  FGLSQLHQLRGRVGRSRERGYAYLLYSPDKPLTETAYDRLATIAQNNELGAGMAVALKDL 988

Query: 626  KQRKEGEILGIKQSG 640
            + R  G +LG +QSG
Sbjct: 989  ELRGAGNVLGAEQSG 1003


>gi|330996173|ref|ZP_08320063.1| transcription-repair coupling factor [Paraprevotella xylaniphila
           YIT 11841]
 gi|329573677|gb|EGG55268.1| transcription-repair coupling factor [Paraprevotella xylaniphila
           YIT 11841]
          Length = 1133

 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 130/410 (31%), Positives = 215/410 (52%), Gaps = 18/410 (4%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           I L  +R+Q   E G   + +  +  ++  +  +  T  Q  A + +  DM +   M R+
Sbjct: 538 IKLYSLRRQ---EKGFAFSPDSFMQHELEASFLYEDTPDQLKATQAVKADMERDRPMDRL 594

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA+ A   A     Q  ++ P  +LA QH++      +   + V+ ++ 
Sbjct: 595 VCGDVGFGKTEVAIRAAFKACADNKQVAVLVPTTVLAYQHFQTFSSRLKGMPVRVDYLSR 654

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               A  +  L+ +A G+ +II+GTH L   S+++  L L+I+DE+ +FGV  + KL Q 
Sbjct: 655 ARSAAKTKDILKDLADGKINIIVGTHKLIGKSVKFKDLGLLIIDEEQKFGVATKEKLRQM 714

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                 L +TATPIPRTL  + +G  D+S I   P  R P++T +   +  + + E +  
Sbjct: 715 KVNVDTLTLTATPIPRTLQFSLMGARDLSVIQTPPPNRYPVQTEVHTFS-AELIAEAVNF 773

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDS 536
            +S   + + +  +I         S+ +    LH+H   + + + HG+M   + E ++  
Sbjct: 774 EMSRNGQVFIVNNRIS--------SLYDLEALLHKHVPDARVCVGHGQMPPEELEKIILG 825

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F N    +L++TT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL 
Sbjct: 826 FVNYDYDVLVSTTIIESGIDIPNANTIIINGAQNFGLSDLHQMRGRVGRSNKKAFCYLLA 885

Query: 597 HP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
            P   L+  +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 886 PPLAALTPEARRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 935


>gi|146340719|ref|YP_001205767.1| transcription repair coupling factor [Bradyrhizobium sp. ORS278]
 gi|146193525|emb|CAL77541.1| transcription repair coupling factor [Bradyrhizobium sp. ORS278]
          Length = 1172

 Score =  200 bits (508), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 147/452 (32%), Positives = 239/452 (52%), Gaps = 39/452 (8%)

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +AG++  +   +   +   +P  V+  +  +     P+  T+ Q +AI+  L D+     
Sbjct: 586  MAGELIKIAAERMLHEAPKMP--VQAGLYDEFCARFPYDETEDQLAAIQATLGDLEAGRP 643

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA+QH +   +  +   +   
Sbjct: 644  MDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTFTERFRGFPV--- 700

Query: 354  IITGNMPQAHR---RKALERI----AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
                N+ QA R    K L ++    A G   I++GTHAL   ++++  L LVIVDE+  F
Sbjct: 701  ----NVAQASRLVSTKELNQVKKGLADGSVDIVVGTHALLGKTVKFRDLGLVIVDEEQHF 756

Query: 407  GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
            GV  + +L Q     HVL ++ATPIPRTL L   G  ++S I   P  R  ++T + P +
Sbjct: 757  GVSHKERLKQLRAEVHVLTLSATPIPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHD 816

Query: 467  RIDEVIERLKVVLSEGKKAYWICPQIE---EKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             +  + E L      G +A+++ P+I+   E KE   ++V E            +A+ HG
Sbjct: 817  PV-MIREALLRERYRGGQAFYVVPRIDDLAEVKEFLDKTVPE----------MKVAVAHG 865

Query: 524  RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +M+    E ++ +F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRV
Sbjct: 866  QMAPTVIEDIISAFYDGKFDILLSTTIVESGLDIPRANTLIVHRADMFGLAQLYQLRGRV 925

Query: 584  GRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIK 637
            GR  ++ +  L   P    +S  +  RL VL++ E    GF +A  DL  R  G +LG +
Sbjct: 926  GR-SKLRAYALFTLPSTHKVSAQAEKRLGVLQSLETLGAGFQLASHDLDIRGAGNLLGDE 984

Query: 638  QSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            QSG  K +    EL+ S+LE A ++ K  +T+
Sbjct: 985  QSGHIKEV--GFELYQSMLEEAIENLKAGITE 1014


>gi|256043474|ref|ZP_05446403.1| transcription-repair coupling factor [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260564670|ref|ZP_05835155.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265989892|ref|ZP_06102449.1| transcription-repair coupling factor [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260152313|gb|EEW87406.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263000561|gb|EEZ13251.1| transcription-repair coupling factor [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 1170

 Score =  200 bits (508), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 229/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++Q 
Sbjct: 589 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIEAVADDLAQG 644

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++          I 
Sbjct: 645 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPIN 704

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV
Sbjct: 705 VAHASRLVGAKELAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGV 761

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + +  L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 762 KHKEWLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 821

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M
Sbjct: 822 VIRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQM 870

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 871 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 930

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 931 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 988

Query: 639 SG 640
           SG
Sbjct: 989 SG 990


>gi|303273712|ref|XP_003056209.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462293|gb|EEH59585.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 426

 Score =  200 bits (508), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 202/377 (53%), Gaps = 15/377 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           ++ T  Q +AI+D   D+S+++  M RI+ GDVG GKT VA+ A+   + +GGQ  ++AP
Sbjct: 32  YTLTPDQATAIRDCYDDLSKRDTPMDRIVVGDVGFGKTEVAMRAIFRVLSSGGQVFVLAP 91

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH   I    +   + VE++  N+ ++ R   L+R   G+  +++GTH +    
Sbjct: 92  TTVLAKQHAATISARLEIFDMSVELLNRNVKESSRLAVLQRWMMGKTDVVVGTHLMLNLP 151

Query: 390 IQYYK-LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + YK L L+++DE+ RFGV+ + +++       VL ++ATPIPRTL +   G  D S +
Sbjct: 152 PENYKRLNLLVIDEEQRFGVKHKDQISALKATVDVLTLSATPIPRTLHMAITGFRDASLV 211

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           T  P  R+PI T +   N    V + ++  L  G + +++ P+I+          ++R  
Sbjct: 212 TTPPPERRPINTQLQVYNE-KTVCDAIQFELDRGGQIFYVVPKIQ-----MIDGALQRLQ 265

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L       I   HG+M     +  MD F  G   +L+ TT++E G+D+ + + IIIE  
Sbjct: 266 GLFPCL--RIMKAHGKMKGDQLDIAMDYFACGKADVLLCTTIVESGLDIPNVNTIIIEEV 323

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNT---EDGFLIAEE 623
           + FGLA L+QLRGRVGR    +   + +     L   +  RL  L+      +GF +AE 
Sbjct: 324 QQFGLASLYQLRGRVGRACRQAYAYMFHADIGDLRSEAQERLLALEECCGLGEGFKLAER 383

Query: 624 DLKQRKEGEILGIKQSG 640
           D+  R  G I G KQSG
Sbjct: 384 DMAIRGVGTIFGEKQSG 400


>gi|3914631|sp|O50224|RECG_THIFE RecName: Full=ATP-dependent DNA helicase recG
 gi|2653995|gb|AAC21662.1| RecG [Acidithiobacillus ferrooxidans]
          Length = 652

 Score =  200 bits (508), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 136/425 (32%), Positives = 229/425 (53%), Gaps = 14/425 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + +S  RGVG      L  +      +  R  D+LF+ PS + DR +   ++ +   +
Sbjct: 32  LQSSVSALRGVGPALVPRLQHM------DLWRVQDVLFHLPSRYQDRRHIASMATLQAGQ 85

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              I G I +    Q   R  + + ++DG+G + +  F+  T  L+  +  GR++   G+
Sbjct: 86  ECAILGEIVR-VDHQRGGREQWLVTVSDGSGRLQIRLFH-MTVALRAQWQVGRRLWCFGE 143

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           ++   + + M+HP +   +      P  +   Y    G++   +++ + +AL+ L  LP+
Sbjct: 144 LRGGFHGLEMIHPEWQMADVPQFQAPRHLTPFYPSSEGITQAQWRRWMAQALTLLDQLPD 203

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS-PARERLAYDELLAGQIALLLMRKQ 246
           ++E  L     +P + E   ++H    A +      PA +RLA +ELLA  +A+  MR+ 
Sbjct: 204 YLENRL--PPQWPGLREGLRLLHE--SADEIPSPQHPAWQRLALEELLANHLAVRRMRQS 259

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
              +    +  +G++  + L ++PFSPT +QE  I +I  D+ +   M R+LQGDVGSGK
Sbjct: 260 GMMQNAPCLRSKGQLWHRFLAHLPFSPTMAQERVIAEINADLVRHRPMRRLLQGDVGSGK 319

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVA  A   A+EAG Q  +MAP  ILA+Q +   +++ +   + V  + G+     RR+
Sbjct: 320 TLVAAAATLTALEAGYQVAMMAPTEILAEQLHARFQQWLEPLGLEVGYLVGSRSPRARRE 379

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E +A G   ++IGT +LFQ+ + +  L LVI+DEQHRFGV+QR +L +K   PH+L+M
Sbjct: 380 TAETLAGGSLRLVIGTQSLFQEGVVFACLGLVIIDEQHRFGVEQRRQLLEKGAMPHLLVM 439

Query: 427 TATPI 431
           TATPI
Sbjct: 440 TATPI 444


>gi|269302679|gb|ACZ32779.1| transcription-repair coupling factor [Chlamydophila pneumoniae
           LPCoLN]
          Length = 1083

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 137/388 (35%), Positives = 205/388 (52%), Gaps = 15/388 (3%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G+   K     P+  T  Q   I  I  DM     M R++ GD G GKT V + A   AV
Sbjct: 544 GESVIKFAETFPYEETPDQLKTIDQIYNDMMSPKLMDRLICGDAGFGKTEVIMRAAVKAV 603

Query: 319 EAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL-ERIAHGQA 376
             G  Q ++M P  ILA QHYE  K+      I + +++    QA  +K + E++A GQ 
Sbjct: 604 CDGHRQVIVMVPTTILATQHYETFKERMAGLPIEIAVLS-RFSQAKVQKLIYEQVASGQI 662

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            IIIGTH L   S+++    L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL 
Sbjct: 663 DIIIGTHKLINKSLEFKNPGLLIIDEEQRFGVKVKDNLKERYPMIDCLTVSATPIPRTLH 722

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           ++  G  D+S I   P  R P+ T ++  N  + +   L+  L  G +AY I  +IE   
Sbjct: 723 MSLSGARDLSVIAMPPLDRLPVSTFVMEHN-TETLTAALRHELLRGGQAYVIHNRIE--- 778

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             +  ++ E   +L     + I + HG+M   D  ++   FKN    +L+AT +IE GID
Sbjct: 779 --SIYTLAETIRNLIPE--ARIGVAHGQMGAEDLSNIFTKFKNQKTNILVATALIENGID 834

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNT 614
           + +A+ I+I++A+ FG+A L+Q++GRVGR  + + C  L  +   LS  +  RL+ L   
Sbjct: 835 IPNANTILIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPAAKRLAALNKQ 894

Query: 615 E--DGFLIAEEDLKQRKEGEILGIKQSG 640
           E   G  IA  DL+ R  G ILG  QSG
Sbjct: 895 EYGGGMKIALHDLEIRGAGNILGTDQSG 922


>gi|308185328|ref|YP_003929461.1| transcription-repair coupling factor [Helicobacter pylori SJM180]
 gi|308061248|gb|ADO03144.1| transcription-repair coupling factor [Helicobacter pylori SJM180]
          Length = 999

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 136/401 (33%), Positives = 217/401 (54%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T+ QE AI +I +D+S    M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTRDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  GQ  ++IGTHA+     
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVELGQVDVLIGTHAIL--GA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKT 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIYR---ELRRNGQIFYIHNHIASISKVKTKLEELIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++    E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 L---------KIAILHSQINANKSEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|257462445|ref|ZP_05626858.1| transcription-repair coupling factor [Fusobacterium sp. D12]
          Length = 781

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 214/378 (56%), Gaps = 13/378 (3%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P++ T +Q+ AI+D+ QDM     M R++ GDVG GKT +A+ A   A+    Q V++
Sbjct: 310 SFPYTETAAQKKAIQDVKQDMEMGKVMDRLICGDVGYGKTEIAIRATFKAIMDQKQVVVL 369

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  +LA+QHY+  ++   N  I + +++       +++ LE+I +G   +IIGT  L  
Sbjct: 370 APTTVLAEQHYQRFQERFLNYPIEIAVLSRMKTAKEQKEILEKIKNGSIDLIIGTSRLLS 429

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +++  L  +I+DE+ +FGV+ + K  +     ++L MTATPIPRTL L+ LG  D+S 
Sbjct: 430 DDLEFKDLGFLIIDEEQKFGVKAKEKFKKMRGNLNILAMTATPIPRTLNLSLLGIRDLSI 489

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           +   P GRK +KT  I   + + +++ +   LS   + ++I   +        + + E+ 
Sbjct: 490 VDIPPEGRKAVKTFFIE-KKEETIVKAILQELSREGQVFYIFNSV--------KRIQEKV 540

Query: 508 NSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             L +   S + +  IHG+MS  + +  ++ F+N    +L++TT++E GID+ +A+ +II
Sbjct: 541 KELEKILPSYVRVDCIHGKMSGKELKYTIEQFENMQIDVLVSTTILENGIDIENANTMII 600

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK--NTEDGFLIAEE 623
           E  E  GL+Q++QLRGR+GRG   S C  +     SK +  R   L       G  ++ E
Sbjct: 601 EGMERLGLSQIYQLRGRIGRGRRQSYCYCIVADYKSKKAEEREKSLMELGKGSGLELSME 660

Query: 624 DLKQRKEGEILGIKQSGM 641
           D++ R  GEILG KQ GM
Sbjct: 661 DMRIRGAGEILGEKQHGM 678


>gi|254469399|ref|ZP_05082804.1| transcription-repair coupling factor [Pseudovibrio sp. JE062]
 gi|211961234|gb|EEA96429.1| transcription-repair coupling factor [Pseudovibrio sp. JE062]
          Length = 1162

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 206/378 (54%), Gaps = 19/378 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q +AI+ +  DM+    M R++ GDVG GKT VAL A   A  +G Q  I+ P 
Sbjct: 614 YDETDDQMTAIESVFDDMASGRPMDRLVCGDVGFGKTEVALRAAFLAAMSGRQVAIVVPT 673

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QHY           I+V   +  +P     +  + +  G   +++GTHAL   +I
Sbjct: 674 TLLARQHYRTFADRFNGLPIVVRQASRLVPGKELSETKKGLKDGSVDVVVGTHALLGKAI 733

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S I  
Sbjct: 734 GFRDLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLIAT 793

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R  +++ I P + +  + E L      G +++++CP++ +  E      V  F  L
Sbjct: 794 PPVDRLAVRSFISPFDPM-VIRESLLREHYRGGQSFYVCPRVSDLAE------VRAF--L 844

Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            E+     +   HG+M   + + +M++F  G   +L+ATT++E G+D+ +A+ +I+  ++
Sbjct: 845 EENVPEVKVVSAHGQMPPGELDDIMNAFYEGKFDVLLATTIVESGLDIPNANTLIVHRSD 904

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAE 622
            FGLAQL+Q+RGRVGR +  +    L+  P    L+  +  RL VL++ E+   GF +A 
Sbjct: 905 MFGLAQLYQIRGRVGRSK--TRAYALFTVPANKTLTATAERRLKVLQSLENLGAGFQLAS 962

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL  R  G +LG +QSG
Sbjct: 963 HDLDIRGAGNLLGEEQSG 980


>gi|261840243|gb|ACY00009.1| transcription-repair coupling factor [Helicobacter pylori 52]
          Length = 999

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/401 (33%), Positives = 217/401 (54%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  G   +++GTHA+     
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVGLGLIDVLVGTHAIL--GA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKI 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIHR---ELRRNGQIFYIHNHIASISKVKTKLEDLIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H ++S  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 LK---------IAILHSQISAHESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ S  RL  L+       G  +A
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQSLKRLLALEKNSYLGSGESVA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|254702954|ref|ZP_05164782.1| transcription-repair coupling factor [Brucella suis bv. 3 str. 686]
 gi|261753561|ref|ZP_05997270.1| transcription-repair coupling factor [Brucella suis bv. 3 str. 686]
 gi|261743314|gb|EEY31240.1| transcription-repair coupling factor [Brucella suis bv. 3 str. 686]
          Length = 1170

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 138/422 (32%), Positives = 229/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P+  T  Q +AI+ +  D++Q 
Sbjct: 589 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPYDETDDQLTAIEAVADDLAQG 644

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++          I 
Sbjct: 645 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPIN 704

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV
Sbjct: 705 VAHASRLVGAKELAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGV 761

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S I   P  R  ++T + P +  
Sbjct: 762 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLIATPPVDRMAVRTFVSPFDPF 821

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M
Sbjct: 822 VIRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQM 870

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 871 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 930

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 931 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 988

Query: 639 SG 640
           SG
Sbjct: 989 SG 990


>gi|261367666|ref|ZP_05980549.1| transcription-repair coupling factor [Subdoligranulum variabile DSM
           15176]
 gi|282570458|gb|EFB75993.1| transcription-repair coupling factor [Subdoligranulum variabile DSM
           15176]
          Length = 1153

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/431 (31%), Positives = 217/431 (50%), Gaps = 23/431 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN--VEGKIAQKILRNIPFSPTKS 276
           +W    ++  A  E +A ++  L  R++  K    P +   +G   Q+      +  T  
Sbjct: 559 DWAKTRKKVRAATEAMAKELIELYARRKQAKGYAFPADDTWQGDFEQRFA----YEETPD 614

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q +   DI  DM Q   M R+L GDVG GKT VAL A    V  G Q  I+AP  ILA Q
Sbjct: 615 QLTCAADIKHDMEQPWPMDRLLCGDVGVGKTEVALRAAFKCVMGGKQCAILAPTTILAWQ 674

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+       +   I + +++       +++ L  +  G   I++GTH L  D +++  L 
Sbjct: 675 HFNTAIARMEAYPIRIGLLSRYRSSKEQKETLRGLKDGTVDIVVGTHRLLSDDVKFRDLG 734

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI+DE+ RFGV+ + KL +      +L ++ATPIPRTL +   G  D+S I + P  R+
Sbjct: 735 LVIIDEEQRFGVKHKEKLKEAFIGVDMLTLSATPIPRTLNMALSGIRDMSTIEQPPFERQ 794

Query: 457 PIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           P++T ++     DE  V E ++  L+ G + Y++  +++   E        R   +    
Sbjct: 795 PVETYVL---EYDEGIVSEAIRKELARGGQVYYLHNRVDTINE-----CAARIGKMVPG- 845

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + + I HG+M++    SV     +    +L+ TT+IE G+DV + + +IIENA+  GL+
Sbjct: 846 -ARVGIAHGKMTEEQISSVWQQLLDNEIDVLVCTTLIETGVDVRNCNTLIIENADRMGLS 904

Query: 575 QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
           QL+QLRGRVGR    +     +     L++ +  RLS ++       GF IA  DL+ R 
Sbjct: 905 QLYQLRGRVGRSSRKAYAYFTFTRDKVLTEVAAKRLSAIREFTAFGSGFRIAMRDLQIRG 964

Query: 630 EGEILGIKQSG 640
            G +LG  Q G
Sbjct: 965 AGSLLGHSQHG 975


>gi|218532420|ref|YP_002423236.1| transcription-repair coupling factor [Methylobacterium
            chloromethanicum CM4]
 gi|218524723|gb|ACK85308.1| transcription-repair coupling factor [Methylobacterium
            chloromethanicum CM4]
          Length = 1196

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 138/396 (34%), Positives = 216/396 (54%), Gaps = 19/396 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T+ Q SAI  +L D++    M R++ GDVG GKT VAL A  AA  +G Q  ++ P 
Sbjct: 644  FQETEDQASAIDAVLDDLNAGRPMDRLVCGDVGFGKTEVALRAAFAAAISGKQVAVVVPT 703

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QH+    +  +   I V  ++  +    +R+    +A G   I++GTHAL   ++
Sbjct: 704  TLLARQHFRTFAERFKGLPINVAQLSRFVSAGEQRQNRAGLADGTVDIVVGTHALLAKNV 763

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L L+IVDE+  FGV  + +L       HVL ++ATPIPRTL L   G  ++S I  
Sbjct: 764  AFKDLGLIIVDEEQHFGVAHKERLKALQADVHVLTLSATPIPRTLQLAMTGVRELSIIAT 823

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R  ++T + P + +  V E L      G +++++ P+IE+  E      V+RF   
Sbjct: 824  PPMDRLAVRTFVTPFDPL-LVREALLRERYRGGQSFYVAPRIEDLAE------VKRFLDT 876

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             E   +++A+ HG+M+    E VM +F  G   +L++TT++E G+D+  A+ +I+  A+ 
Sbjct: 877  -EMPETTVAVAHGQMAAGQLEDVMTAFYEGKYDVLLSTTIVESGLDIPTANTLIVHRADM 935

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEE 623
            FGLA L+QLRGRVGR +  +    L+  P    L+  +  RL VL++ +    GF +A  
Sbjct: 936  FGLAALYQLRGRVGRSK--ARAYALFTTPANRQLTTQAEQRLKVLQSLDTLGAGFQLASH 993

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            DL  R  G +LG  QSG  K +    EL+  +LE A
Sbjct: 994  DLDIRGAGNLLGDAQSGHIKEV--GYELYQQMLEDA 1027


>gi|203284524|ref|YP_002222264.1| transcription-repair coupling factor [Borrelia duttonii Ly]
 gi|201083967|gb|ACH93558.1| transcription-repair coupling factor [Borrelia duttonii Ly]
          Length = 1125

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 211/376 (56%), Gaps = 13/376 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AI +I QDM     M R+L GDVG GKT VA+ A   AV    Q  I++P
Sbjct: 584 PYDETPDQLTAISEIKQDMMSSKVMDRLLCGDVGFGKTEVAMRAAFKAVMGKKQVAILSP 643

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             IL +QH+   KK  +N  I + +I+  + ++  ++ L  +  G   IIIGTH +    
Sbjct: 644 TTILTEQHFNTFKKRFKNFPIQIAMISRFITKSKEKEILRNLETGNIDIIIGTHKILSKK 703

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I Y  L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 704 ITYKDLGLIIIDEEQRFGVKEKEKLKEIKVSVDSLALSATPIPRSLHMSLIKLRDISVLK 763

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R  I+T +   + I  +   ++  LS   + +++   I+E    + ++++E+   
Sbjct: 764 TPPQNRIKIETYVEEFSEI-LIKHAIENELSRDGQVFFVHHNIQEL--DSIKAMIEKVVP 820

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 + IA IH +++    E++M  F N + ++L+ATT+IE GID+ +A+ III NA 
Sbjct: 821 Y-----ARIATIHAKLTGEQIENIMQDFINKSYQVLLATTIIENGIDIENANTIIINNAN 875

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEED 624
            FGLAQL+QLRGRVGR  + +    LY  +  L++ +  RL  +    +   GF IA +D
Sbjct: 876 RFGLAQLYQLRGRVGRSSKKAFAYFLYKENSNLNEGAIERLRAISEFSELGAGFQIAMKD 935

Query: 625 LKQRKEGEILGIKQSG 640
           ++ R  G +LG +Q G
Sbjct: 936 MEIRGVGNLLGREQHG 951


>gi|15618800|ref|NP_225086.1| transcription-repair coupling [Chlamydophila pneumoniae CWL029]
 gi|15836424|ref|NP_300948.1| transcription-repair coupling [Chlamydophila pneumoniae J138]
 gi|16752145|ref|NP_445512.1| transcription-repair coupling factor [Chlamydophila pneumoniae
           AR39]
 gi|33242253|ref|NP_877194.1| transcription-repair coupling factor [Chlamydophila pneumoniae
           TW-183]
 gi|4377210|gb|AAD19029.1| Transcription-Repair Coupling [Chlamydophila pneumoniae CWL029]
 gi|7189888|gb|AAF38755.1| transcription-repair coupling factor [Chlamydophila pneumoniae
           AR39]
 gi|8979265|dbj|BAA99099.1| transcription-repair coupling [Chlamydophila pneumoniae J138]
 gi|33236764|gb|AAP98851.1| transcription-repair coupling factor [Chlamydophila pneumoniae
           TW-183]
          Length = 1085

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 137/388 (35%), Positives = 205/388 (52%), Gaps = 15/388 (3%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G+   K     P+  T  Q   I  I  DM     M R++ GD G GKT V + A   AV
Sbjct: 546 GESVIKFAETFPYEETPDQLKTIDQIYNDMMSPKLMDRLICGDAGFGKTEVIMRAAVKAV 605

Query: 319 EAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL-ERIAHGQA 376
             G  Q ++M P  ILA QHYE  K+      I + +++    QA  +K + E++A GQ 
Sbjct: 606 CDGHRQVIVMVPTTILATQHYETFKERMAGLPIEIAVLS-RFSQAKVQKLICEQVASGQI 664

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            IIIGTH L   S+++    L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL 
Sbjct: 665 DIIIGTHKLINKSLEFKNPGLLIIDEEQRFGVKVKDNLKERYPMIDCLTVSATPIPRTLH 724

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           ++  G  D+S I   P  R P+ T ++  N  + +   L+  L  G +AY I  +IE   
Sbjct: 725 MSLSGARDLSVIAMPPLDRLPVSTFVMEHN-TETLTAALRHELLRGGQAYVIHNRIE--- 780

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             +  ++ E   +L     + I + HG+M   D  ++   FKN    +L+AT +IE GID
Sbjct: 781 --SIYTLAETIRNLIPE--ARIGVAHGQMGAEDLSNIFTKFKNQKTDILVATALIENGID 836

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNT 614
           + +A+ I+I++A+ FG+A L+Q++GRVGR  + + C  L  +   LS  +  RL+ L   
Sbjct: 837 IPNANTILIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPAAKRLAALNKQ 896

Query: 615 E--DGFLIAEEDLKQRKEGEILGIKQSG 640
           E   G  IA  DL+ R  G ILG  QSG
Sbjct: 897 EYGGGMKIALHDLEIRGAGNILGTDQSG 924


>gi|158521716|ref|YP_001529586.1| transcription-repair coupling factor [Desulfococcus oleovorans
           Hxd3]
 gi|158510542|gb|ABW67509.1| transcription-repair coupling factor [Desulfococcus oleovorans
           Hxd3]
          Length = 1174

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/377 (35%), Positives = 194/377 (51%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q   I ++L DM+    M R++ GDVG GKT VA+ +    V  G Q  ++ P 
Sbjct: 630 FEETDDQLKVINEVLSDMASSTPMDRLVCGDVGYGKTEVAMRSSFMCVCDGFQVAVLVPT 689

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QH+    +        +  ++     A +++ +  +  G+  I+IGTH L    +
Sbjct: 690 TVLAEQHFATFSRRFAGYPFNIACLSRFKTPARQKQIVADLKEGRVDIVIGTHRLLSKDV 749

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            + +L LVI+DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++  G  DIS IT 
Sbjct: 750 AFKQLGLVILDEEQRFGVKHKETLKKMRTTVDVLSLTATPIPRTLHMSLSGMRDISVITT 809

Query: 451 KPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  RK IKT    I+  D+ I R  ++  L  G + Y++   I +        + +   
Sbjct: 810 PPEHRKAIKTY---ISEFDDAIIRTAIRKELERGGQIYFVHNNIHK-----IAFIADHLK 861

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L       + I+HGR+     E+ M  F N    +L+ T +IE GID+  A+ I I  A
Sbjct: 862 KLVPEV--RLGIVHGRLDQNTLETCMMQFVNREIDMLVCTRIIESGIDIPSANTIFINRA 919

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLAQ++QLRGRVGR +E +   L       L K++  RL VL    D   GF IA  
Sbjct: 920 DMFGLAQIYQLRGRVGRSDEQAYAYLFIPRESALGKDARKRLKVLMEHSDLGSGFQIAMN 979

Query: 624 DLKQRKEGEILGIKQSG 640
           DLK R  G  LG+ QSG
Sbjct: 980 DLKIRGGGAALGVSQSG 996


>gi|297626903|ref|YP_003688666.1| Transcription-repair coupling factor [Propionibacterium
            freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922668|emb|CBL57245.1| Transcription-repair coupling factor [Propionibacterium
            freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 1232

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/428 (31%), Positives = 213/428 (49%), Gaps = 17/428 (3%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EW    +R R A  ++ AG I L   R+  +     P        +   R   +  T  Q
Sbjct: 598  EWKHRKSRARKAVRQVAAGLIKLYAARQASRGHAFSPDTPWQHEMEDAFR---YEETPDQ 654

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I D+  DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 655  LACITDVKHDMEQIVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 714

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y+   +      + V  ++    +      LE +A G+  ++IGTH L    + Y  L L
Sbjct: 715  YQTFAERYSGFPVTVAQLSRFQTEKEVATTLEEMAQGKVDVVIGTHRLLSSKVHYKDLGL 774

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S IT  P  R P
Sbjct: 775  VIIDEEQRFGVEHKEALKKLRVNVDVLSMSATPIPRTLEMAVTGIREMSTITTPPEERHP 834

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T   P +   +V+  ++  ++   + + +  ++     ++   V  R   +     + 
Sbjct: 835  VLTFAGPYDE-GQVVAAIRREMAREGQVFLVHNRV-----ASIDRVAARIREMVPE--AR 886

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +   HG+MS+   E VM  F      +L+ TT++E G+D+  A+ +I++ A+H GL+Q+H
Sbjct: 887  VVTAHGQMSEKTLEKVMVDFWERRADVLVCTTIVEAGLDIPTANTLIVDRADHMGLSQMH 946

Query: 578  QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR  E      LY     L+  ++ RL+ L    +   G  IA +DL+ R  G 
Sbjct: 947  QLRGRVGRSRERGYAYFLYPGDRTLTTTAHDRLAALAANNELGAGMAIAMKDLEIRGAGN 1006

Query: 633  ILGIKQSG 640
            +LG +QSG
Sbjct: 1007 LLGDEQSG 1014


>gi|328543941|ref|YP_004304050.1| Mfd, transcription-repair coupling factor [polymorphum gilvum
           SL003B-26A1]
 gi|326413685|gb|ADZ70748.1| Mfd, transcription-repair coupling factor [Polymorphum gilvum
           SL003B-26A1]
          Length = 1166

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/383 (34%), Positives = 205/383 (53%), Gaps = 27/383 (7%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q +AI  +  D++    M R++ GDVG GKT VAL A   A  +G Q  ++ P
Sbjct: 613 PYEETEDQLNAIDAVFADLASGRPMDRLVCGDVGFGKTEVALRAAFVAALSGRQVAVVVP 672

Query: 330 IGILAQQHYEFIKKYTQNTQIIV---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
             +LA+QHY+   +      + V     + G    A  RK L     G   I+IGTHAL 
Sbjct: 673 TTLLARQHYKTFAERFHGLPVRVAQASRLVGAKDLAETRKGL---VDGSVDIVIGTHALL 729

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              I +  L L+I+DE+  FGV+ + +L +     HVL ++ATPIPRTL L   G  ++S
Sbjct: 730 GKGIGFRDLGLLIIDEEQHFGVKHKERLKELKADVHVLTLSATPIPRTLQLALTGVRELS 789

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSV 503
            I   P  R  ++T + P + I  V E L      G +++++CP++ +  E+      SV
Sbjct: 790 LIATPPVDRLAVRTFVSPFDPI-VVREALLREHYRGGQSFYVCPRVSDLAETAEFLAESV 848

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            E            +A+ HG+M+    + VM++F  G   +L++TT++E G+D+  A+ +
Sbjct: 849 PE----------VKVAVAHGQMAPGQLDDVMNAFYEGKYDVLLSTTIVESGLDIPTANTL 898

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---G 617
           I+  A+ FGLAQL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    G
Sbjct: 899 IVHRADMFGLAQLYQLRGRVGR-SKVRAYALFTVPANKTLTATAERRLKVLQSLDTLGAG 957

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F +A  DL  R  G +LG +QSG
Sbjct: 958 FQLASHDLDIRGAGNLLGEEQSG 980


>gi|126736472|ref|ZP_01752213.1| transcription-repair coupling factor [Roseobacter sp. CCS2]
 gi|126714010|gb|EBA10880.1| transcription-repair coupling factor [Roseobacter sp. CCS2]
          Length = 1148

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 140/441 (31%), Positives = 233/441 (52%), Gaps = 18/441 (4%)

Query: 237 QIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           QIA  L+R   ++E+     ++    +  + L   P+  T  Q +AI+D+L D+     M
Sbjct: 558 QIAERLIRVAAERELRTAPALDPPDGLWDQFLARFPYVETDDQLAAIEDVLTDLGSGKPM 617

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VA+ A   A  +G Q  I+AP  +LA+QHY+   +  +   + V  
Sbjct: 618 DRLICGDVGFGKTEVAIRAAFIAALSGVQVAIIAPTTLLARQHYQNFAERFRGFPVTVRP 677

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           ++  +         + +  G   I++GTHAL    +++  L L+++DE+ +FGVQ + +L
Sbjct: 678 LSRFVSTKDANLTRDGLTKGTVDIVVGTHALLAKGVRFKNLGLLVIDEEQKFGVQHKERL 737

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            Q  T  HVL +TATPIPRTL L+  G  D+S I   P  R  I+T +   + I  V E 
Sbjct: 738 KQLRTDVHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPIDRLAIRTYVSEFDTI-TVREA 796

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L      G +++ + P+I +  E      +E F        + I+   G+M+  + +  M
Sbjct: 797 LLREHYRGGQSFVVVPRISDMAE------MEDFLKREVPEVTYISAT-GQMAAGELDDRM 849

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           ++F +G   +L+ATT++E G+D+  A+ +I+  ++ FGL+QL+Q+RGRVGR +  +   L
Sbjct: 850 NAFYDGKYDVLLATTIVESGLDIPTANTMIVWRSDMFGLSQLYQIRGRVGRSKTRAYAYL 909

Query: 595 LYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FLI 646
              P   L+  +  RL VL + +    GF +A +DL  R  G +LG +QSG  +   + +
Sbjct: 910 TTKPRQKLTDTAQKRLRVLGSIDTLGAGFTLASQDLDIRGAGNLLGEEQSGQMREVGYEL 969

Query: 647 AQPELHDSLLEIARKDAKHIL 667
            Q  L D +  I    A+ I+
Sbjct: 970 YQQMLEDQIAAIRSGQAEGII 990


>gi|317060106|ref|ZP_07924591.1| transcription-repair coupling factor [Fusobacterium sp. D12]
 gi|313685782|gb|EFS22617.1| transcription-repair coupling factor [Fusobacterium sp. D12]
          Length = 752

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 214/378 (56%), Gaps = 13/378 (3%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P++ T +Q+ AI+D+ QDM     M R++ GDVG GKT +A+ A   A+    Q V++
Sbjct: 281 SFPYTETAAQKKAIQDVKQDMEMGKVMDRLICGDVGYGKTEIAIRATFKAIMDQKQVVVL 340

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  +LA+QHY+  ++   N  I + +++       +++ LE+I +G   +IIGT  L  
Sbjct: 341 APTTVLAEQHYQRFQERFLNYPIEIAVLSRMKTAKEQKEILEKIKNGSIDLIIGTSRLLS 400

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +++  L  +I+DE+ +FGV+ + K  +     ++L MTATPIPRTL L+ LG  D+S 
Sbjct: 401 DDLEFKDLGFLIIDEEQKFGVKAKEKFKKMRGNLNILAMTATPIPRTLNLSLLGIRDLSI 460

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           +   P GRK +KT  I   + + +++ +   LS   + ++I   +        + + E+ 
Sbjct: 461 VDIPPEGRKAVKTFFIE-KKEETIVKAILQELSREGQVFYIFNSV--------KRIQEKV 511

Query: 508 NSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             L +   S + +  IHG+MS  + +  ++ F+N    +L++TT++E GID+ +A+ +II
Sbjct: 512 KELEKILPSYVRVDCIHGKMSGKELKYTIEQFENMQIDVLVSTTILENGIDIENANTMII 571

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK--NTEDGFLIAEE 623
           E  E  GL+Q++QLRGR+GRG   S C  +     SK +  R   L       G  ++ E
Sbjct: 572 EGMERLGLSQIYQLRGRIGRGRRQSYCYCIVADYKSKKAEEREKSLMELGKGSGLELSME 631

Query: 624 DLKQRKEGEILGIKQSGM 641
           D++ R  GEILG KQ GM
Sbjct: 632 DMRIRGAGEILGEKQHGM 649


>gi|208435421|ref|YP_002267087.1| transcription-repair coupling factor [Helicobacter pylori G27]
 gi|208433350|gb|ACI28221.1| transcription-repair coupling factor [Helicobacter pylori G27]
          Length = 999

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 135/401 (33%), Positives = 217/401 (54%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  G   +++GTHA+     
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVELGLVDVLVGTHAIL--GT 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKT 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIYR---ELRRNGQIFYIHNHIASISKVKTKLEELIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 LK---------IAILHSQINAYESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|332674307|gb|AEE71124.1| DNA helicase RecG [Helicobacter pylori 83]
          Length = 621

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 190/619 (30%), Positives = 295/619 (47%), Gaps = 72/619 (11%)

Query: 44  LLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           LL Y P  + D    +H+   +S + E  I+    Y      F   KR  YK L      
Sbjct: 20  LLVYTPKGYKDLNLLKHFELGLSGVLEVDILDKRNYAKVLKIFAYSKRF-YKNLE----- 73

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
               L F+  +    N F  G  + + GK+++             F+ +  +N P I   
Sbjct: 74  ----LVFFNYSAFHHNQFKTGESLFIYGKLEQSS-----------FNQAYIINTPKILTE 118

Query: 160 YSLPTGLSVDLFKKI-----IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           +    G    +FKK+     I E L +L  L E ++K+ +++     + E F     P  
Sbjct: 119 F----GKISLIFKKVKSHKKIQENLQKLISL-ENLKKEGIKENIAHLLLEIF--FPTPHF 171

Query: 215 AKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            KDFE    ++S     L Y E+L     L   + QF  +I  P N E   A   + ++P
Sbjct: 172 VKDFETHKNFSSQHLNALKYIEMLFYMKNLECKKLQFNAKIACPNNSERLKA--FITSLP 229

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP 
Sbjct: 230 FKLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLMAPT 287

Query: 331 GILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            ILA+Q Y    +F+  Y +     VE++ G   +       E I H    ++IGT AL 
Sbjct: 288 SILAKQLYNEALKFLPPYFE-----VELLLGGSHKKRSNHLFETITH----VVIGTQALL 338

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGD 442
            D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L     
Sbjct: 339 FDKRDLDEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAF 398

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S
Sbjct: 399 VKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLS 457

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E  +   + F  ++ I  G+  D +KE V++ F+     +L+ATT+IEVGI +   S+
Sbjct: 458 LSEGASFWQKRF-KNVYITSGQ--DKNKEEVIEEFREFGS-ILLATTLIEVGISLPRLSV 513

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           +++   E  GLA LHQLRGRV R      C L       +    RL    +  DGF IAE
Sbjct: 514 MVVLAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFKIAE 569

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DL+ RK G++L G +QSG
Sbjct: 570 LDLEYRKSGDLLQGGEQSG 588


>gi|317181253|dbj|BAJ59039.1| transcription-repair coupling factor [Helicobacter pylori F32]
          Length = 999

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/401 (33%), Positives = 217/401 (54%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  G   +++GTHA+F    
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVELGLIDVLVGTHAIF--CA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKI 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIHR---ELRRNGQIFYIHNHIASISKVKTKLEELIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G   +L+ T+++E GI + +A+ III+
Sbjct: 716 L---------KIAILHSQINANESEEIMLEFAKGNYHVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|306820709|ref|ZP_07454337.1| transcription-repair coupling factor [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551319|gb|EFM39282.1| transcription-repair coupling factor [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 701

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 206/380 (54%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            F  T+ Q  +IK++ +DM     M R+L GDVG GKT VA+  +  A     Q   + P
Sbjct: 186 AFEETQDQIRSIKEVKKDMENIKPMDRLLCGDVGYGKTEVAIRGIFKACMDSKQVAFLVP 245

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHY+ + +  +N  + VE+++    +  + + LE++  G+  +IIGTH +    
Sbjct: 246 TTILAQQHYKTVSERFENFPLKVEVLSRFKTRKEQNEILEKLKLGEVDVIIGTHRILSKD 305

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+++DE+ RFGV+ + K+    T   VL +TATPIPRTL ++  G  D+S + 
Sbjct: 306 VIFKDLGLLVIDEEQRFGVKDKEKIKSLKTNIDVLTLTATPIPRTLNMSLSGIRDMSVLE 365

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
           E P  R  + T +       I + IER    +S G + +++   +E  +K  +N + +V 
Sbjct: 366 EPPNDRLSVITYVTEAREGIIMDAIER---EISRGGQVFFVYNSVEDIDKMSANIKKLVP 422

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                       +A+ HG+M     E +M  +      LL+ TT+IE G+D+ +A+ II+
Sbjct: 423 NVR---------LAVAHGQMQPTVLEDIMMDYLEKKYDLLLCTTIIETGMDISNANTIIV 473

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLI 620
            NA+  GL+QL+QLRGRVGR    +   L+Y     L++ +  RL  +++ TE   GF +
Sbjct: 474 YNADKMGLSQLYQLRGRVGRSSRQAYAYLMYEKDKVLTEIAQKRLKAIRDFTEFGSGFKV 533

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  G +LG  QSG
Sbjct: 534 AMMDLELRGSGNLLGETQSG 553


>gi|170748065|ref|YP_001754325.1| transcription-repair coupling factor [Methylobacterium radiotolerans
            JCM 2831]
 gi|170654587|gb|ACB23642.1| transcription-repair coupling factor [Methylobacterium radiotolerans
            JCM 2831]
          Length = 1198

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 145/437 (33%), Positives = 233/437 (53%), Gaps = 29/437 (6%)

Query: 234  LAGQIALLLMRKQFKKEIGI--PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            +AG++  +  ++  +K   +  P  + G+ A +     PF  T+ Q +AI  +L D++  
Sbjct: 611  MAGELIKVAAQRFVRKAPALQAPEGLYGEFAARF----PFEETEDQANAIDAVLDDLNAG 666

Query: 292  NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
              M R++ GDVG GKT VAL A  AA  +G Q  ++ P  +LA+QHY    +  +   + 
Sbjct: 667  RPMDRLVCGDVGFGKTEVALRAAFAAAISGKQVAVIVPTTLLARQHYRTFAERFKGLPVQ 726

Query: 352  VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
            V  ++     A  ++    +A G   I++GTHAL   +I +  L L+IVDE+  FGV  +
Sbjct: 727  VAQLSRFASAAEMKQTRAGLAAGTVDIVVGTHALLAKNIAFKDLGLIIVDEEQHFGVAHK 786

Query: 412  LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RID 469
             +L       HVL ++ATPIPRTL L   G  ++S I   P  R  ++T + P +   I 
Sbjct: 787  ERLKALQADVHVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLVVRTFVTPFDPLTIR 846

Query: 470  EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            E + R +     G +++++ P+IE+  E      V++F    E     +A+ HG+M+   
Sbjct: 847  EALLRERY---RGGQSFYVVPRIEDLAE------VKKFLD-AEMPEIKVAVAHGQMAAGQ 896

Query: 530  KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
             E VM +F  G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR +  
Sbjct: 897  LEDVMTAFYEGKFDVLLSTTIVESGLDIPTANTLIVHRADMFGLAQLYQLRGRVGRSK-- 954

Query: 590  SSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMP 642
            +    L+  P    L+  +  RL VL++ +    GF +A  DL  R  G +LG  QSG  
Sbjct: 955  ARAYALFTTPANRQLTAQAEQRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDAQSGHI 1014

Query: 643  KFLIAQPELHDSLLEIA 659
            K +    EL+  +LE A
Sbjct: 1015 KEV--GYELYQQMLEDA 1029


>gi|217033838|ref|ZP_03439263.1| hypothetical protein HP9810_877g42 [Helicobacter pylori 98-10]
 gi|216943736|gb|EEC23179.1| hypothetical protein HP9810_877g42 [Helicobacter pylori 98-10]
          Length = 999

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 135/401 (33%), Positives = 218/401 (54%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S +  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSQRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  G   +++GTHA+     
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVGLGLIDVLVGTHAIL--GA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKI 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++N   ++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIHR---ELRRNGQIFYIHNHIASISKVKTNLEDLIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 L---------KIAILHSQINAHESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|255262960|ref|ZP_05342302.1| transcription-repair coupling factor [Thalassiobium sp. R2A62]
 gi|255105295|gb|EET47969.1| transcription-repair coupling factor [Thalassiobium sp. R2A62]
          Length = 1151

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 209/376 (55%), Gaps = 13/376 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  AI D+++DM     M R++ GDVG GKT VA+ A   A  +G Q  I+AP
Sbjct: 595 PYVETEDQLGAISDVIEDMGAGRPMDRLVCGDVGFGKTEVAMRAAFVAAMSGTQVAIIAP 654

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY+   +  +   I V  ++  +         + I+ G A I++GTHAL   S
Sbjct: 655 TTLLARQHYKSFAERFRGFPINVRPLSRFVGTKDAAATRDGISDGTADIVVGTHALLAKS 714

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ +FGV  + +L    T  HVL +TATPIPRTL L+  G  ++S I 
Sbjct: 715 IKFKDLGLLIIDEEQKFGVTHKERLKSLRTDVHVLTLTATPIPRTLQLSLSGVRELSIIG 774

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R  I+T +   + I  + E L      G +++++ P+I +  E      +E F  
Sbjct: 775 TPPVDRLAIRTYVSEFDTI-TLREALLREHYRGGQSFFVVPRISDLPE------IEDFLK 827

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 S I   +G+++  + +  M++F +G   +L+ATT++E G+D+  A+ +I+  A+
Sbjct: 828 SEVPEVSYIQ-ANGQLAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIVHRAD 886

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEED 624
            FGL+QL+Q+RGRVGR +  +   +   P   L++ +  RL VL + +    GF +A +D
Sbjct: 887 MFGLSQLYQIRGRVGRSKTRAYAYMTTKPRQKLTQTAEKRLRVLASLDSLGAGFTLASQD 946

Query: 625 LKQRKEGEILGIKQSG 640
           L  R  G +LG +QSG
Sbjct: 947 LDIRGAGNLLGEEQSG 962


>gi|298373454|ref|ZP_06983443.1| transcription-repair coupling factor [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274506|gb|EFI16058.1| transcription-repair coupling factor [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 1109

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/380 (33%), Positives = 196/380 (51%), Gaps = 21/380 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  A  D+  DM     M R++ GDVG GKT VA+ A   A   G Q  ++ P 
Sbjct: 548 YEDTPDQSKATADVKTDMQSPKPMDRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVLVPT 607

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QHY+   +  +N  + VE ++        ++ + R+  G+  I+IGTH +    +
Sbjct: 608 TILAFQHYKTFAERLKNYPVTVEYLSRAKSPKQTKEIISRLREGKIDILIGTHKIANKDV 667

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+++DE+ +FGV  + KL +       L +TATPIPRTL  + +G  D+S I  
Sbjct: 668 VFKDLGLLVIDEEQKFGVSVKEKLKELKANVDTLTLTATPIPRTLQFSLMGARDLSIINT 727

Query: 451 KPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEKK--ESNFRSVVER 506
            P  R P+ T +I   R DE  + E ++  ++   + +++  +I+     ++  + +V  
Sbjct: 728 PPPNRYPVVTELI---RFDEETIREAIEFEMNRNGQIFFVNNKIQNLYLLQTKIKKIVPE 784

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                    + IA+ HG+M     E  +  F N    +L+ATTVIE GID+ + + I + 
Sbjct: 785 ---------ARIAVAHGQMPTTQLEDTIIDFINYDYDILLATTVIESGIDMPNVNTIFVN 835

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621
           NA HFGL+ LHQLRGRVGR    + C L+      +S ++  RL  +    D   GF IA
Sbjct: 836 NANHFGLSDLHQLRGRVGRSNRKAYCYLITSDMKDVSDDARRRLQAISTFSDLGSGFNIA 895

Query: 622 EEDLKQRKEGEILGIKQSGM 641
            +DL  R  G +LG +QSG 
Sbjct: 896 MQDLDIRGAGNMLGAEQSGF 915


>gi|226327605|ref|ZP_03803123.1| hypothetical protein PROPEN_01476 [Proteus penneri ATCC 35198]
 gi|225204131|gb|EEG86485.1| hypothetical protein PROPEN_01476 [Proteus penneri ATCC 35198]
          Length = 257

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 144/213 (67%), Gaps = 2/213 (0%)

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK-AYWICPQIEEK 495
           +T+  D+D S I E P GR P+ TV IP  R +++IER+++  +E K+ AYW+C  IE+ 
Sbjct: 1   MTAYADMDTSIIDELPPGRTPVTTVAIPDTRRNDIIERIRLACTEEKRQAYWVCTLIEDS 60

Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                ++    ++ L        + ++HGRM   +K++VM +FK    +LL+ATTVIEVG
Sbjct: 61  DVLEAQAAQVIYDELTIALPEIKVGLVHGRMKPAEKQAVMTAFKENELQLLVATTVIEVG 120

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +AS++II+N E  GLAQLHQLRGRVGRG   S C+LLY  PL++ +  RL VL+++
Sbjct: 121 VDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAIASHCVLLYKTPLTQTARLRLQVLRDS 180

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
            DGF+IA++DL+ R  GE+LG KQ+G  +F +A
Sbjct: 181 NDGFVIAQKDLEIRGPGELLGTKQTGNAQFKVA 213


>gi|170738843|ref|YP_001767498.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168193117|gb|ACA15064.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 1098

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 142/405 (35%), Positives = 218/405 (53%), Gaps = 27/405 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F PT  Q +AI  ++ D++    M R++ GDVG GKT VAL A AAA+ AG Q  + AP 
Sbjct: 564 FPPTPDQAAAIDAVMADLAAGRPMDRLVCGDVGFGKTEVALRAAAAALFAGKQVAVAAPT 623

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L +QH E  ++      I+   ++  +P A  ++    +A G   ++IGTHAL    +
Sbjct: 624 TVLVRQHVETFRRRFARFGIVPAQLSRLVPPAEAKRVRAGLADGSVRLVIGTHALAGRGL 683

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            Y  L LV++DE+ RFG  Q+ +L + A+  HVL +TATPIPRTL    +G  D+S I  
Sbjct: 684 VYADLGLVVIDEEQRFGAAQKARLRRAASGAHVLTLTATPIPRTLQSALVGLQDLSVIAT 743

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLS----EGKKAYWICPQIEE--KKESNFRSVV 504
            P  R+PI+TV+ P +      E ++  L+     G +++ +CP+I +    E+  R++V
Sbjct: 744 PPVVRRPIRTVVAPFD-----PETVRAALTREHRRGGQSFVVCPRIADLAPMEARLRAIV 798

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                       S+A+ HG M     +  M  F  G   +L+AT +IE G+DV  A+ ++
Sbjct: 799 PDL---------SLAVAHGEMPPAAMDEAMVRFAEGEGDVLLATNIIESGLDVPRANTML 849

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR-----LSVLKNTEDGFL 619
           + + E FGLAQLHQLRGRVGRG+  ++  LL  P       +      L+ L     GF 
Sbjct: 850 VWHPERFGLAQLHQLRGRVGRGQRRAAAYLLTDPEAPPPPASEARLRALTALDRLGAGFA 909

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           ++  DL  R  G++ G +Q+G  K +     L+  LLE A + A+
Sbjct: 910 LSARDLDLRGAGDLFGEEQAGHVKLIGLG--LYRDLLERAIRAAR 952


>gi|11992016|gb|AAG42403.1|AF300471_6 Mfd protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 1145

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/396 (32%), Positives = 216/396 (54%), Gaps = 18/396 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ QE AI D+++D+++   M R++ GDVG GKT VAL A   A  +G Q  ++ P
Sbjct: 594 PYQETEDQEHAISDVIEDLAKGKPMDRLICGDVGFGKTEVALRAAFVAAMSGLQVALVCP 653

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QHY    +  +   + +  ++  +P    +   E +A G   I+IGTHA+   +
Sbjct: 654 TTLLARQHYSNFLERFEGFPLQIGRLSRLVPAKEAKACREALADGTIDIVIGTHAILSKT 713

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I + +L LVIVDE+  FGV  + +L       H L +TATPIPRTL +   G  ++S I 
Sbjct: 714 IDFNRLGLVIVDEEQHFGVVHKERLKALKNDVHQLTLTATPIPRTLQMAMSGLRELSVIQ 773

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R  +++ ++P + +  + E L      G +++ + P+I +  +      +E+F  
Sbjct: 774 TPPVDRLAVRSYVMPWDPV-AIREALLREHYRGGQSFIVVPRISDLAD------LEKF-- 824

Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L E        I HG+M+  + E+ M +F +    +L++TT++E G+D+  A+ +I+  A
Sbjct: 825 LSEQVPEIRFVIAHGQMAATEVENRMSAFYDKKFDVLLSTTIVESGLDIPSANTMIVYRA 884

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGL+QL+Q+RGRVGR +  +   L    +  +S+ +  RL +L   +    GF +A  
Sbjct: 885 DRFGLSQLYQIRGRVGRSKTRAYAYLTTPVNHSISETAEKRLHILSTLDSLGAGFQLASH 944

Query: 624 DLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLL 656
           DL  R  G +LG +QSG  K   F + Q  L D++L
Sbjct: 945 DLDIRGAGNLLGDEQSGHIKEVGFELYQSMLEDAIL 980


>gi|303245477|ref|ZP_07331761.1| transcription-repair coupling factor [Desulfovibrio fructosovorans
           JJ]
 gi|302493326|gb|EFL53188.1| transcription-repair coupling factor [Desulfovibrio fructosovorans
           JJ]
          Length = 1150

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/380 (33%), Positives = 203/380 (53%), Gaps = 23/380 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI ++L DM +   M R++ GDVG GKT VAL A   AV  G Q  ++ P 
Sbjct: 603 FEETPDQEKAIDEVLADMERPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVAMLCPT 662

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QHY+      +   + VE+++  +    R+  LE ++ G+  I+IGTH +    +
Sbjct: 663 TVLAEQHYQNFMARLEGFPVRVEMLSRFVSPKRRKVVLEAVSRGEVDILIGTHRILSSDV 722

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
               + L+I+DE+ RFGV+ + +L         L +TATPIPRTL L+  G   +S I  
Sbjct: 723 TIPNIGLLILDEEQRFGVKHKERLKAFKKNIDALTLTATPIPRTLQLSLSGVRGLSVIET 782

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            PA RK ++T ++  +   + EV+ R    L    + +W+  +++  +E     V     
Sbjct: 783 PPAERKTVETALVERDPAFLREVLRR---ELERQGQVFWVHNRVQGLEE-----VAAFVR 834

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +L     + +A+ HG+MS+   E  M  F +G   +L+ T++IE G+D   A+ ++++NA
Sbjct: 835 TLAPQ--AKVAMAHGQMSETGLEEAMHGFWHGETDILVCTSIIESGLDFPRANTLVVDNA 892

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYH-----PPLSKNSYTRLSVLKNTE---DGFLI 620
             FGL QL+QLRGRVGR    +    +       P L++    RL V+ + +    GF +
Sbjct: 893 HMFGLGQLYQLRGRVGRSPRQAYAYFVVPSIERVPELARK---RLRVILDMDYLGAGFQV 949

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A EDL+ R  G ILG  QSG
Sbjct: 950 AMEDLRLRGAGNILGEAQSG 969


>gi|305433019|ref|ZP_07402175.1| DNA helicase RecG [Campylobacter coli JV20]
 gi|304443720|gb|EFM36377.1| DNA helicase RecG [Campylobacter coli JV20]
          Length = 604

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 221/405 (54%), Gaps = 23/405 (5%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+++PFS TK Q +A+KDI +D+  K    R++ GDVG GKTLV L   AA +    QA+
Sbjct: 219 LKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLL--GAALMVYPKQAI 276

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA Q YE  KK       I+ I  G      + K LE     +A++IIGTHAL
Sbjct: 277 LMAPTSILANQLYEEAKKLLPEFVDILFIKGGK-----KEKDLEEKIK-KANLIIGTHAL 330

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQR---LKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               +Q +  +LV++DEQHRFG  QR     L +   APH +  +ATPIPRTL +     
Sbjct: 331 IH--LQSHNAVLVMIDEQHRFGSAQRQQIYSLNENELAPHFIQFSATPIPRTLSMIQSEL 388

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           ++ S I E P  +K I T+ I      ++ E++K  +++  +   I P +    +  + S
Sbjct: 389 LNFSFIKEMPF-KKDITTLCIQNEGFAKLSEKIKEEIAQNHQIIIIYPLVNPSDKIPYLS 447

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +       H+   + + HG+  D  K+ +++ F++    +L++TTV+EVGI +   S 
Sbjct: 448 LEQAKEYWQSHY-EKVFVTHGK--DKQKDEILERFRD-EGNILLSTTVVEVGISLPRLST 503

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I  AE  GLA LHQLRGRVGR    S+C L  +  L K   +RL    +T DGF IAE
Sbjct: 504 IVIVGAERLGLATLHQLRGRVGRVGLKSTCYL--YTKL-KEIPSRLKEFASTLDGFKIAE 560

Query: 623 EDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            DLK R  G++L G  Q G  +F        + +LE A+KD   I
Sbjct: 561 LDLKNRLSGDLLDGFIQHG-NEFKYFDFSKDEYILEKAKKDLMEI 604


>gi|78357082|ref|YP_388531.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219487|gb|ABB38836.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 1152

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/424 (31%), Positives = 221/424 (52%), Gaps = 29/424 (6%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           ER+A+D      + +   RK  K     P+N    + ++   +  F  T  Q  AI+D+L
Sbjct: 572 ERIAHD-----LVEMYAWRKVAKGYRYSPVN---DMYREFEASFGFEETPDQARAIEDVL 623

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            DM +   M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QH++  +   
Sbjct: 624 DDMERAEPMDRLVCGDVGFGKTEVALRAAFRAAMDGKQVALLCPTTVLAEQHFQTFRSRL 683

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
               + V +++  + +  +++ L     GQ  I+IGTH +  D +    L L+I+DE+ R
Sbjct: 684 GQFPVNVGMLSRFVSRQRQKEVLAACERGQIDILIGTHRILSDDVILPNLSLLILDEEQR 743

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+ + +L +      VL +TATPIPRTL L+  G  ++S I   P  RKP+KT +  I
Sbjct: 744 FGVRHKERLKKMRRNVDVLTLTATPIPRTLQLSMSGIRELSVIETAPPERKPVKTAL--I 801

Query: 466 NRIDEVIER--LKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAII 521
           +R  +++    L+ +  EG + +W+  +++  E+     RS+V           + + + 
Sbjct: 802 DRDPDILREVLLRELQREG-QVFWVHNRVQGLERVAEYVRSLVP---------DARVGMA 851

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+MS+   E  M  F +    +L+ T ++E G+D   A+ ++++ A+ FGL QL+QLRG
Sbjct: 852 HGQMSEKALEETMHKFWHAELDVLVCTAIVESGLDFPRANTLVVDQAQMFGLGQLYQLRG 911

Query: 582 RVGRGEEISSCILLYH-----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           RVGR +  +  + +       P L++     +  +     GF +A EDL+ R  G ILG 
Sbjct: 912 RVGRSDRQAHAVFVVPDVDGVPELARKRLKIILEMDYLGAGFQVAMEDLRLRGAGNILGE 971

Query: 637 KQSG 640
            QSG
Sbjct: 972 VQSG 975


>gi|317010243|gb|ADU80823.1| transcription-repair coupling factor [Helicobacter pylori India7]
          Length = 999

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/401 (33%), Positives = 216/401 (53%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+      G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCTFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  GQ   +IGTHA+     
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVELGQVDALIGTHAIL--GA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKT 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIYR---ELRRNGQIFYIHNHIASISKVKTKLEELIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 L---------KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|332880692|ref|ZP_08448365.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332681326|gb|EGJ54250.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 1133

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/410 (31%), Positives = 216/410 (52%), Gaps = 18/410 (4%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           I L  +R+Q   E G   + +  +  ++  +  +  T  Q  A + +  DM +   M R+
Sbjct: 538 IKLYSLRRQ---EKGFAFSPDSFMQHELEASFLYEDTPDQLKATQAVKADMERDRPMDRL 594

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA+ A   A     Q  ++ P  +LA QH++      +   + V+ ++ 
Sbjct: 595 VCGDVGFGKTEVAIRAAFKACADNKQVAVLVPTTVLAYQHFQTFSSRLKGMPVRVDYLSR 654

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               A  ++ L  +A G+ +II+GTH L   S+++  L L+I+DE+ +FGV  + KL Q 
Sbjct: 655 ARSAAKTKEILRDLADGKINIIVGTHKLIGKSVKFKDLGLLIIDEEQKFGVATKEKLRQM 714

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                 L +TATPIPRTL  + +G  D+S I   P  R P++T +   +  + + E +  
Sbjct: 715 KVNVDTLTLTATPIPRTLQFSLMGARDLSVIQTPPPNRYPVQTEVHTFS-AELIAEAVNF 773

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDS 536
            +S   + + +  +I         S+ +    LH+H   + + + HG+M   + E+++  
Sbjct: 774 EMSRNGQVFIVNNRIS--------SLYDLEALLHKHVPDARVCVGHGQMPPEELENIIFG 825

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L++TT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL 
Sbjct: 826 FVHYDYDVLVSTTIIESGIDIPNANTIIINGAQNFGLSDLHQMRGRVGRSNKKAFCYLLA 885

Query: 597 HP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
            P   L+  +  RL  ++N  D   G  IA +DL  R  G +LG +QSG 
Sbjct: 886 PPLAALTPEARRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 935


>gi|241762219|ref|ZP_04760301.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
 gi|241373266|gb|EER62885.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
          Length = 1167

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/396 (32%), Positives = 216/396 (54%), Gaps = 18/396 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ QE AI D+++D+++   M R++ GDVG GKT VAL A   A  +G Q  ++ P
Sbjct: 616  PYQETEDQEHAISDVIEDLAKGKPMDRLICGDVGFGKTEVALRAAFVAAMSGLQVALVCP 675

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QHY    +  +   + +  ++  +P    +   E +A G   I+IGTHA+   +
Sbjct: 676  TTLLARQHYSNFLERFEGFPLQIGRLSRLVPAKEAKACREALADGTIDIVIGTHAILSKT 735

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I + +L LVIVDE+  FGV  + +L       H L +TATPIPRTL +   G  ++S I 
Sbjct: 736  IDFNRLGLVIVDEEQHFGVVHKERLKALKNDVHQLTLTATPIPRTLQMAMSGLRELSVIQ 795

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R  +++ ++P + +  + E L      G +++ + P+I +  +      +E+F  
Sbjct: 796  TPPVDRLAVRSYVMPWDPV-AIREALLREHYRGGQSFIVVPRISDLAD------LEKF-- 846

Query: 510  LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L E        I HG+M+  + E+ M +F +    +L++TT++E G+D+  A+ +I+  A
Sbjct: 847  LSEQVPEIRFVIAHGQMAATEVENRMSAFYDKKFDVLLSTTIVESGLDIPSANTMIVYRA 906

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLIAEE 623
            + FGL+QL+Q+RGRVGR +  +   L    +  +S+ +  RL +L   +    GF +A  
Sbjct: 907  DRFGLSQLYQIRGRVGRSKTRAYAYLTTPVNHSISETAEKRLHILSTLDSLGAGFQLASH 966

Query: 624  DLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLL 656
            DL  R  G +LG +QSG  K   F + Q  L D++L
Sbjct: 967  DLDIRGAGNLLGDEQSGHIKEVGFELYQSMLEDAIL 1002


>gi|302039582|ref|YP_003799904.1| transcription-repair-coupling factor [Candidatus Nitrospira
           defluvii]
 gi|300607646|emb|CBK43979.1| Transcription-repair-coupling factor [Candidatus Nitrospira
           defluvii]
          Length = 1157

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 202/376 (53%), Gaps = 21/376 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  AI+DI +D++    M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +L
Sbjct: 607 TPDQRRAIEDIAKDLASTKPMDRLVCGDVGYGKTEVAMRAAFKAVEENRQVAVLVPTTLL 666

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A QHY+   +        V +++        +  ++    G   ++IGTH L Q  +++ 
Sbjct: 667 AHQHYDNFAERFAPFPTRVALLSRFQSPKDTKAIIKETEAGLVDVLIGTHRLLQKDVKFR 726

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L LVI+DE+  FGV+ + +L Q  T   VL +TATPIPRTL +T     D+S I   P+
Sbjct: 727 NLGLVIIDEEQWFGVKHKERLKQLRTQVDVLTLTATPIPRTLQMTMASVRDLSIIDTPPS 786

Query: 454 GRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           GR  I+T ++  +   I E I R    L  G + Y++  ++E          +ER  +  
Sbjct: 787 GRLAIRTQVLRFSEKAIREAILR---ELGRGGQTYFVHNRVE---------TMERMGAWL 834

Query: 512 EHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           +     + I + HG+M     E+VM  F +    +LIA+ +I+ GIDV  A+ II+  A+
Sbjct: 835 QELVPEARIVMAHGQMDSKPLEAVMLKFFHREADILIASAIIQSGIDVPTANTIIVNRAD 894

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEED 624
            FGLAQL+QLRGRVGRG E +    L      LS+++  RL+ ++  TE   GF IA  D
Sbjct: 895 TFGLAQLYQLRGRVGRGGEQAYAYFLVPDEGNLSEDAQKRLTAIQQFTELGSGFRIAAAD 954

Query: 625 LKQRKEGEILGIKQSG 640
           L+ R  G +LG +QSG
Sbjct: 955 LEIRGAGNLLGKQQSG 970


>gi|283856518|ref|YP_163381.2| transcription-repair coupling factor [Zymomonas mobilis subsp.
            mobilis ZM4]
 gi|283775523|gb|AAV90270.2| transcription-repair coupling factor [Zymomonas mobilis subsp.
            mobilis ZM4]
          Length = 1167

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/396 (32%), Positives = 216/396 (54%), Gaps = 18/396 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ QE AI D+++D+++   M R++ GDVG GKT VAL A   A  +G Q  ++ P
Sbjct: 616  PYQETEDQEHAISDVIEDLAKGKPMDRLICGDVGFGKTEVALRAAFVAAMSGLQVALVCP 675

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QHY    +  +   + +  ++  +P    +   E +A G   I+IGTHA+   +
Sbjct: 676  TTLLARQHYSNFLERFEGFPLQIGRLSRLVPAKEAKACREALADGTIDIVIGTHAILSKT 735

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I + +L LVIVDE+  FGV  + +L       H L +TATPIPRTL +   G  ++S I 
Sbjct: 736  IDFNRLGLVIVDEEQHFGVVHKERLKALKNDVHQLTLTATPIPRTLQMAMSGLRELSVIQ 795

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R  +++ ++P + +  + E L      G +++ + P+I +  +      +E+F  
Sbjct: 796  TPPVDRLAVRSYVMPWDPV-AIREALLREHYRGGQSFIVVPRISDLAD------LEKF-- 846

Query: 510  LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L E        I HG+M+  + E+ M +F +    +L++TT++E G+D+  A+ +I+  A
Sbjct: 847  LSEQVPEIRFVIAHGQMAATEVENRMSAFYDKKFDVLLSTTIVESGLDIPSANTMIVYRA 906

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLIAEE 623
            + FGL+QL+Q+RGRVGR +  +   L    +  +S+ +  RL +L   +    GF +A  
Sbjct: 907  DRFGLSQLYQIRGRVGRSKTRAYAYLTTPVNHSISETAEKRLHILSTLDSLGAGFQLASH 966

Query: 624  DLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLL 656
            DL  R  G +LG +QSG  K   F + Q  L D++L
Sbjct: 967  DLDIRGAGNLLGDEQSGHIKEVGFELYQSMLEDAIL 1002


>gi|317182774|dbj|BAJ60558.1| transcription-repair coupling factor [Helicobacter pylori F57]
          Length = 999

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/401 (33%), Positives = 217/401 (54%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  G   +++GTHA+     
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVELGLIDVLVGTHAIL--GA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKI 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIHR---ELRRNGQIFYIHNHIASISKVKTKLEDLIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H ++S  + E  M  F  G+ ++L+ T+++E GI + +A+ III+
Sbjct: 716 LK---------IAILHSQISAHESEETMLEFAKGSYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDTIYELS 867


>gi|148557853|ref|YP_001257567.1| transcription-repair coupling factor [Brucella ovis ATCC 25840]
 gi|148369138|gb|ABQ62010.1| transcription-repair coupling factor [Brucella ovis ATCC 25840]
          Length = 1132

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/422 (32%), Positives = 229/422 (54%), Gaps = 35/422 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +AG +  +   +Q +   G P+    +G  A+   R  P   T  Q +AI+ +  D++Q 
Sbjct: 551 IAGHLIQIAAERQMR---GAPVMTPPDGLYAEFAAR-FPDDETDDQLTAIEAVADDLAQG 606

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L++QH++          I 
Sbjct: 607 KPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPIN 666

Query: 352 V---EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           V     + G    A  +K LE    G   I++GTHAL   SI++  L L+I+DE+  FGV
Sbjct: 667 VAHASRLVGAKELAATKKGLE---EGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGV 723

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
           + + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T + P +  
Sbjct: 724 KHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL 783

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            I E + R +     G +++++ P+I +  +      +E F  L EH     +A+ HG+M
Sbjct: 784 VIRETLLRERY---RGGQSFYVVPRIADLTD------IEEF--LKEHVPELKVAVAHGQM 832

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR
Sbjct: 833 APGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGR 892

Query: 586 GEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            ++      L+  P    L++ +  RL VL++ +    GF +A  D+  R  G +LG +Q
Sbjct: 893 SKQ--RAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQ 950

Query: 639 SG 640
           SG
Sbjct: 951 SG 952


>gi|317179751|dbj|BAJ57539.1| transcription-repair coupling factor [Helicobacter pylori F30]
          Length = 999

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/401 (33%), Positives = 217/401 (54%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSTLVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  G   +++GTHA+F    
Sbjct: 543 TLLAHQHFETLRVRFEN--FGVKVARLDRYASEKNKLLKAVELGLIDVLVGTHAIF--CA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKI 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIHR---ELHRNGQIFYIHNHIASISKVKTKLEDLIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E  M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 L---------KIAILHSQINANESEETMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|295130108|ref|YP_003580771.1| transcription-repair coupling factor [Propionibacterium acnes SK137]
 gi|291376182|gb|ADE00037.1| transcription-repair coupling factor [Propionibacterium acnes SK137]
          Length = 1222

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/377 (32%), Positives = 198/377 (52%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T  Q +   D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 663  YVETPDQLTTFADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 722

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +L QQH++   +      + V  ++        R+ LE +  G   +++GTH L    +
Sbjct: 723  TLLVQQHFQTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEV 782

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I  
Sbjct: 783  EFKDLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIAT 842

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T   P +   +V+  ++  L+   + ++I  +++  EK  +  R +V    
Sbjct: 843  PPEERHPVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPE-- 899

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A
Sbjct: 900  -------ARIVTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRA 952

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
            +  GL+QLHQLRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +
Sbjct: 953  DLMGLSQLHQLRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMK 1012

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 1013 DLEIRGAGNLLGGEQSG 1029


>gi|212696152|ref|ZP_03304280.1| hypothetical protein ANHYDRO_00688 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676781|gb|EEB36388.1| hypothetical protein ANHYDRO_00688 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 1163

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 205/381 (53%), Gaps = 25/381 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T SQ  +I +I  DM     M R+L GDVG GKT VAL A   AV  G Q   + P 
Sbjct: 619 YEETDSQLRSIDEIKNDMEDIKPMDRLLCGDVGYGKTEVALRAAFKAVMDGYQVCFLVPT 678

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA+QH++ +++  +   I   +++  + +  + K +  +  G+  II+GTH L    I
Sbjct: 679 TILARQHFKTMQERFKYFPIDCAMLSRFVSKKDQEKYIHNLKSGKIDIIVGTHRLLSKDI 738

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++ KL L+I+DE+ RFGV+ + KL +      VL ++ATPIPRTL ++  G  D+S + E
Sbjct: 739 KFKKLGLLIIDEEQRFGVRHKDKLKKLKENIDVLTLSATPIPRTLQMSLTGIRDMSTLDE 798

Query: 451 KPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            P  R+P+ T ++  +    +I+R ++  L    + Y++  +            V   + 
Sbjct: 799 PPERRQPVNTYVLEYDF--SIIKRAIEKELDRDGQVYFVYNR------------VYNIDK 844

Query: 510 LHEHF-----TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           ++ H       + I I HG+MS    E +M+ F +G   +L+ATT+IE G+D+ + + II
Sbjct: 845 IYNHLKLLVPDAKIEIAHGQMSAKSLEKIMEDFVSGEIDILLATTIIETGMDIQNVNTII 904

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619
           + +++  GL+QL+QL+GR+GR    S     Y     L++    RL  +K+  D   G+ 
Sbjct: 905 VYDSDMMGLSQLYQLKGRIGRSSRSSYAYFTYAKGKVLTEIGEKRLKSIKDFSDFGSGYK 964

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           IA  DL+ R  G ILG  QSG
Sbjct: 965 IAMRDLELRGAGNILGESQSG 985


>gi|126737697|ref|ZP_01753427.1| transcription-repair coupling factor [Roseobacter sp. SK209-2-6]
 gi|126721090|gb|EBA17794.1| transcription-repair coupling factor [Roseobacter sp. SK209-2-6]
          Length = 1158

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 135/398 (33%), Positives = 220/398 (55%), Gaps = 21/398 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  AI+D+++D+     M R++ GDVG GKT VA+ A   A  +G Q  I+AP
Sbjct: 598 PYQETEDQLRAIEDVMEDLHSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVAP 657

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH     +  +   + V  ++  +      K  E +A G   I++GTHAL   +
Sbjct: 658 TTLLARQHAAGFAERFRGFPLEVRQLSRFVSAKDASKTREGLAKGTIDIVVGTHALLAKN 717

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 718 IRFQNLGLLIIDEEQHFGVAHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIG 777

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVER 506
             P  R  I+T    ++  D V  R + +L E   G +++++ P+I     S+   + E 
Sbjct: 778 TPPVDRLAIRTY---VSEFDAVTIR-EALLREHYRGGQSFYVVPRI-----SDLPEIEEF 828

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             +        +A   G+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++ 
Sbjct: 829 LKTQLPELRYVVAT--GQMAAGELDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMVVH 886

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGLAQL+Q+RGRVGR +  +   L   P   L++ +  RL VL + +    GF +A
Sbjct: 887 RADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRQRLTQTAEKRLRVLGSLDTLGAGFTLA 946

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 947 SQDLDIRGAGNLLGEEQSGQMRDV--GYELYQSMLEEA 982


>gi|62185446|ref|YP_220231.1| putative transcription-repair coupling factor [Chlamydophila
           abortus S26/3]
 gi|62148513|emb|CAH64284.1| putative transcription-repair coupling factor [Chlamydophila
           abortus S26/3]
          Length = 1085

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/389 (34%), Positives = 201/389 (51%), Gaps = 17/389 (4%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G+   K   + P+  T  Q  AI+ I  DM     M R++ GD G GKT V + A   AV
Sbjct: 545 GEEVIKFEESFPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAV 604

Query: 319 EAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             G  Q ++M P  ILA QHYE   +      I + +++        +K  E  A G   
Sbjct: 605 CDGQRQVIVMVPTTILANQHYETFTQRMAGLPINIAVLSRFSEGKALKKIFEDTAQGNVD 664

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH L   ++++    L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL +
Sbjct: 665 ILIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDFLKERYPTIDCLTVSATPIPRTLYM 724

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE--K 495
           +  G  D+S IT  P  R P+ T ++  N  + V   L+  L  G +AY I   IE   +
Sbjct: 725 SLSGARDLSLITMPPLDRLPVSTFVLEHNE-ETVSAALRHELLRGGQAYVIHNLIESIFR 783

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  R++V           + IA+ HG+MS  +  S+   FK+    +L+AT +IE GI
Sbjct: 784 LGNTIRTLVPE---------ARIAVAHGQMSSDELASIFQKFKDKETNILVATALIENGI 834

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKN 613
           D+ +A+ I++++A+ FG+A L+Q++GRVGR    + C  L  +   LS  +  RL  L  
Sbjct: 835 DIPNANTILVDHADKFGMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLQALNK 894

Query: 614 TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
            E   G  IA  DL+ R  G ILG  QSG
Sbjct: 895 QEYGGGMKIALHDLEIRGAGNILGTDQSG 923


>gi|308183706|ref|YP_003927833.1| transcription-repair coupling factor [Helicobacter pylori PeCan4]
 gi|308065891|gb|ADO07783.1| transcription-repair coupling factor [Helicobacter pylori PeCan4]
          Length = 1001

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/401 (33%), Positives = 216/401 (53%), Gaps = 26/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N  + V  +   +  + + K L+ +  G    +IGTHA+     
Sbjct: 543 TLLAHQHFETLRARFENFGVKVARLDRYIKTSEKNKLLKAVELGLVDALIGTHAIL--GT 600

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L++VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 601 KFKNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKT 660

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++   +++ +
Sbjct: 661 PPTDRKPSRTFLKEKNDELLKEIIYR---ELRRNGQIFYIHNHIASISKVKTKLENLIPK 717

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 718 L---------KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 768

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 769 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 828

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 829 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 869


>gi|323342263|ref|ZP_08082495.1| transcription-repair-coupling factor [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463375|gb|EFY08569.1| transcription-repair-coupling factor [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 1138

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 121/378 (32%), Positives = 214/378 (56%), Gaps = 17/378 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T+ Q++AI +I +DM +   M R+L GDVG GKT VA+ A   A     Q V + P 
Sbjct: 593 YELTQDQKTAIDEIKRDMERDVPMDRLLCGDVGFGKTEVAIRAAFKAFVDHKQVVFLCPT 652

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            IL+QQH   +K+   +  + +E++   +    + + ++R+  G+  I++GTH +    +
Sbjct: 653 TILSQQHARTLKERLSDFPVTIEVLNRFVSDKEKNEIIQRVKDGKVDILVGTHRVLSRDV 712

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+I+DE+ RFGV+ + ++ +   +  VL ++ATPIPRTL ++ +G   +S++  
Sbjct: 713 KFKDLGLLIIDEEQRFGVEHKERIKEFKVSVDVLSLSATPIPRTLQMSLIGLRSLSQLNM 772

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P+ R P+ T II  N+  I+++I +    L+   + +++   +E+       SV     
Sbjct: 773 PPSNRLPVMTYIIEKNQKTINDIISK---ELNRDGQVFYLFNNVEQ-----IYSVASVIA 824

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +  E   +++A++HG+M   + E VM  F +    +L+ TT+IE GID+ +A+ II++NA
Sbjct: 825 NHVE--AANVAVVHGQMERHEIEDVMIRFISKEINVLVCTTIIETGIDIPNANTIIVDNA 882

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEE 623
             FGL+QL+Q++GRVGR + ++    +      L++ +  RL  +K       G+ IA  
Sbjct: 883 HRFGLSQLYQIKGRVGRSDRLAYAYFVVPNKRGLTELAQKRLQAIKEFTQLGSGYKIAMR 942

Query: 624 DLKQRKEGEILGIKQSGM 641
           DL  R  GE+LG  QSG 
Sbjct: 943 DLTIRGAGELLGGNQSGF 960


>gi|257452998|ref|ZP_05618297.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_5R]
 gi|317059538|ref|ZP_07924023.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_5R]
 gi|313685214|gb|EFS22049.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_5R]
          Length = 983

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 209/377 (55%), Gaps = 13/377 (3%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P++ T +Q+ AI+D+ QDM     M R++ GDVG GKT +A+ A   A+    Q V++
Sbjct: 454 SFPYTETSAQKKAIQDVKQDMEMGKIMDRLICGDVGYGKTEIAIRATFKAIMDHKQVVLL 513

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  +LA+QHY   ++   N  I + +++       +++ LE+I  G   ++IGT  L  
Sbjct: 514 APTTVLAEQHYHRFQERFLNYPIEIAVLSRMKTPKEQKEILEKIKSGSIDLVIGTSRLLS 573

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D I++  L  VI+DE+ +FGV+ + K  +     ++L MTATPIPRTL L+ LG  D+S 
Sbjct: 574 DDIEFKDLGFVIIDEEQKFGVKAKEKFKKIRGNINILAMTATPIPRTLNLSLLGIRDLSI 633

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           +   P GRK IKT  I     + V   LK +  EG+  Y           ++ + + E+ 
Sbjct: 634 VDTPPDGRKTIKTFFIEKKEENIVKAILKELAREGQVFYVF---------NSVKRIEEKV 684

Query: 508 NSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             L +   S + I  IHG+MS  + +  ++ F+N    +L++TT+IE GID+ +A+ +II
Sbjct: 685 KELEKILPSYVKIDYIHGKMSGKELKYKIEQFENMQIDVLVSTTIIENGIDIENANTMII 744

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL--KNTEDGFLIAEE 623
           E  E  GL+Q++QLRGR+GRG   S C  +     SK +  R   L       G  ++ E
Sbjct: 745 EGMEKLGLSQIYQLRGRIGRGRRQSYCYCIISEYKSKKAEEREKSLIELGQGSGLDLSME 804

Query: 624 DLKQRKEGEILGIKQSG 640
           D++ R  GEILG KQ G
Sbjct: 805 DMRIRGAGEILGEKQHG 821


>gi|167946991|ref|ZP_02534065.1| putative ATP-dependent DNA helicase RecG [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 209

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 97/196 (49%), Positives = 134/196 (68%), Gaps = 1/196 (0%)

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           ++MTATPIPRTL +T+  D+DIS I E P GR P++TV+IP NR DEV+ER++   + G+
Sbjct: 1   MIMTATPIPRTLAMTAYADLDISLIDELPPGRTPVQTVVIPDNRRDEVVERVRAGCAAGR 60

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + YW+C  +EE +    ++      SL E      + ++HGR+   +KE +M  FK G  
Sbjct: 61  QVYWVCTLVEESELLQAQAAEASAESLTETLPELEVGLVHGRIKSDEKEQIMARFKAGEI 120

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L+Y  PLS 
Sbjct: 121 DLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVDSHCVLMYQAPLSA 180

Query: 603 NSYTRLSVLKNTEDGF 618
           N+  RL++L+ + DG 
Sbjct: 181 NARQRLAILRESSDGL 196


>gi|210135730|ref|YP_002302169.1| transcription-repair coupling factor [Helicobacter pylori P12]
 gi|210133698|gb|ACJ08689.1| transcription-repair coupling factor [Helicobacter pylori P12]
          Length = 999

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 135/401 (33%), Positives = 217/401 (54%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  G   +++GTHA+     
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVELGLIDVLVGTHAIL--GA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKT 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIHR---ELRRNGQIFYIHNHIASISKVKTKLEGLIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 L---------KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|15612477|ref|NP_224130.1| ATP-dependent DNA helicase RecG [Helicobacter pylori J99]
 gi|10720254|sp|Q9ZJA1|RECG_HELPJ RecName: Full=ATP-dependent DNA helicase recG
 gi|4156031|gb|AAD06990.1| ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
          Length = 623

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 176/555 (31%), Positives = 273/555 (49%), Gaps = 58/555 (10%)

Query: 104 LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP 163
           L F+  +    N F  G  + + GK+++             F+ +  +N P I   +   
Sbjct: 74  LVFFNHSAFYYNQFKTGESLFIYGKLEQSS-----------FNQAYIINTPKILTEF--- 119

Query: 164 TGLSVDLFKKI-----IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
            G    +FKK+     I E L +L  L E ++K+ +++     + E F     P   KDF
Sbjct: 120 -GKISLIFKKVKNHKKIQENLQKLLSL-ENLKKEGVKENVARLLLEIF--FPTPHFVKDF 175

Query: 219 E----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           E    + S     L Y E+L     L   + QF  +I  P N E   A   + ++PF  T
Sbjct: 176 ETNKNFPSQHLNALKYIEMLFYMKNLERKKLQFNAKIACPNNSERLKA--FIASLPFKLT 233

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  ILA
Sbjct: 234 RDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLMAPTSILA 291

Query: 335 QQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
           +Q Y    +F+  Y +     VE++ G   +       E+I H    ++IGT AL  D  
Sbjct: 292 KQLYHEALKFLPPYFE-----VELLLGGSHKKRSNHLFEKITH----VVIGTQALLFDKR 342

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDIS 446
              +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L     +  +
Sbjct: 343 DLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTT 402

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I E P   K I+T+++       V+E++   +++  +   + P + + ++  + S+ E 
Sbjct: 403 MIREIPYP-KEIETLVLHKREFKIVMEKISEEIAKNHQVIVVYPLVNKSEKIPYLSLSEG 461

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +   + F  +I    G+  D +KE V++ F+     +L+ATT+IEVGI +   S+I+I 
Sbjct: 462 ASFWQKRF-KNIYTTSGQ--DKNKEEVIEEFRE-LGSILLATTLIEVGISLPRLSVIVIL 517

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
             E  GLA LHQLRGRV R      C L       +    RL    +  DGF IAE DL+
Sbjct: 518 APERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFKIAELDLQ 573

Query: 627 QRKEGEIL-GIKQSG 640
            RK G++L G KQSG
Sbjct: 574 YRKSGDLLQGGKQSG 588


>gi|313772670|gb|EFS38636.1| transcription-repair coupling factor [Propionibacterium acnes
            HL074PA1]
 gi|313810893|gb|EFS48607.1| transcription-repair coupling factor [Propionibacterium acnes
            HL083PA1]
 gi|313834448|gb|EFS72162.1| transcription-repair coupling factor [Propionibacterium acnes
            HL056PA1]
 gi|314974450|gb|EFT18545.1| transcription-repair coupling factor [Propionibacterium acnes
            HL053PA1]
 gi|314977360|gb|EFT21455.1| transcription-repair coupling factor [Propionibacterium acnes
            HL045PA1]
 gi|314985541|gb|EFT29633.1| transcription-repair coupling factor [Propionibacterium acnes
            HL005PA1]
 gi|315097614|gb|EFT69590.1| transcription-repair coupling factor [Propionibacterium acnes
            HL038PA1]
 gi|327331627|gb|EGE73366.1| transcription-repair coupling factor [Propionibacterium acnes
            HL096PA2]
 gi|327446976|gb|EGE93630.1| transcription-repair coupling factor [Propionibacterium acnes
            HL043PA1]
 gi|327449987|gb|EGE96641.1| transcription-repair coupling factor [Propionibacterium acnes
            HL043PA2]
 gi|328761618|gb|EGF75134.1| transcription-repair coupling factor [Propionibacterium acnes
            HL099PA1]
          Length = 1208

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 197/374 (52%), Gaps = 17/374 (4%)

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q +   D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L
Sbjct: 652  TPDQLTTFADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL 711

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             QQH++   +      + V  ++        R+ LE +  G   +++GTH L    +++ 
Sbjct: 712  VQQHFQTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEVEFK 771

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P 
Sbjct: 772  DLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPE 831

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLH 511
             R P+ T   P +   +V+  ++  L+   + ++I  +++  EK  +  R +V       
Sbjct: 832  ERHPVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPE----- 885

Query: 512  EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  
Sbjct: 886  ----ARIVTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLM 941

Query: 572  GLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GL+QLHQLRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+
Sbjct: 942  GLSQLHQLRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLE 1001

Query: 627  QRKEGEILGIKQSG 640
             R  G +LG +QSG
Sbjct: 1002 IRGAGNLLGGEQSG 1015


>gi|27379712|ref|NP_771241.1| transcription-repair coupling factor [Bradyrhizobium japonicum USDA
            110]
 gi|27352864|dbj|BAC49866.1| transcription-repair coupling factor [Bradyrhizobium japonicum USDA
            110]
          Length = 1172

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/414 (33%), Positives = 223/414 (53%), Gaps = 23/414 (5%)

Query: 255  INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            + V+  +  +     P+  T+ Q  AI+  L+D+     M R++ GDVG GKT VAL A 
Sbjct: 605  LPVQPGLYDEFCARFPYDETEDQLGAIESTLKDLELGRPMDRLICGDVGFGKTEVALRAA 664

Query: 315  AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A    G Q  ++ P  +LA+QH     +  +   + V   +  +P     +  + IA G
Sbjct: 665  FAVALEGKQVAVVVPTTLLARQHARTFTERFKGFPVNVAQASRLIPTKELNQVKKGIADG 724

Query: 375  QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
               I++GTHAL   +I++  L LVIVDE+  FGV  + +L    +  HVL ++ATPIPRT
Sbjct: 725  SVDIVVGTHALLGKAIKFRDLGLVIVDEEQHFGVTHKERLKALRSEVHVLTLSATPIPRT 784

Query: 435  LVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQI 492
            L L   G  ++S I   P  R  ++T + P +   I E + R +     G +A+++ P+I
Sbjct: 785  LQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERY---RGGQAFYVVPRI 841

Query: 493  EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            ++  E      V+ F  L ++     +A+ HG+M     E +M +F +G   +L++TT++
Sbjct: 842  DDLAE------VKDF--LDKNVPEMKVAVAHGQMPPAVIEDIMTAFYDGKFDILLSTTIV 893

Query: 552  EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRL 608
            E G+D+ +A+ +I+  A+ FGLAQL+QLRGRVGR  ++ +  L   P    ++  +  RL
Sbjct: 894  ESGLDIPNANTLIVHRADMFGLAQLYQLRGRVGR-SKLRAYALFTLPAQQKITTQAERRL 952

Query: 609  SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             VL++ E    GF +A  DL  R  G +LG +QSG  K +    EL+ S+LE A
Sbjct: 953  IVLQSLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEV--GFELYQSMLEEA 1004


>gi|319898902|ref|YP_004158995.1| transcription repair coupling factor [Bartonella clarridgeiae 73]
 gi|319402866|emb|CBI76417.1| transcription repair coupling factor [Bartonella clarridgeiae 73]
          Length = 1166

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/398 (32%), Positives = 215/398 (54%), Gaps = 18/398 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  AI  +L D++    M R++ GDVG GKT VA+ +       G Q  ++ P
Sbjct: 616  PYEETDDQMDAIDAVLDDLASGKPMDRLICGDVGFGKTEVAIRSAFVTALNGYQVAVVVP 675

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L++QHY+      +   + +  ++  +      +  + I+ G   I+IGTHAL  DS
Sbjct: 676  TTLLSRQHYKTFMSRFEGLPVKIAHLSRLVKTKELAQVKKGISEGTIDIVIGTHALLNDS 735

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + + +L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT
Sbjct: 736  VNFSRLGLLIIDEEQHFGVKHKERLKKLKSDIHVLTLSATPIPRTLSLALSGLRELSLIT 795

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R  ++T I P + +  + E L      G +++++CP+I +       S VE +  
Sbjct: 796  TPPIDRMAVRTFISPFD-VMVIRETLLREYYRGGQSFYVCPRISD------LSYVEEY-- 846

Query: 510  LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L  H       I HG+M     + +M++F +G   +L++TT+IE G+D+  A+ +I+  A
Sbjct: 847  LKTHVPELKFVIAHGQMPARQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANTLIVHRA 906

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEE 623
            E FGL+ L+QLRGRVGR ++ +  +  +     L   +  RL VL++ +    GF +A  
Sbjct: 907  EMFGLSALYQLRGRVGRSKQRAYALFTFPSGKVLIPAADRRLKVLQSLDTLGAGFQLASH 966

Query: 624  DLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEI 658
            D+  R  G +LG +QSG  K   F + Q  L +++ E+
Sbjct: 967  DMDIRGSGNLLGEEQSGHIKEVGFELYQKMLEEAVAEL 1004


>gi|308062783|gb|ADO04671.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Cuz20]
          Length = 621

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 190/619 (30%), Positives = 292/619 (47%), Gaps = 72/619 (11%)

Query: 44  LLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           LL Y P  + D    +H+   +S + E  I+    Y      F   KR  YK L      
Sbjct: 20  LLVYTPKGYKDLNLLKHFELGLSGVLEVDILDKRNYAKVLKIFAYSKRF-YKNLE----- 73

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
               L F+  +    N F  G  + + GK+++             F+ +  +N P I   
Sbjct: 74  ----LVFFNYSAFHHNQFKTGESLFIYGKLEQSS-----------FNQAYIINTPKILTE 118

Query: 160 YSLPTGLSVDLFKKI-----IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           +    G    +FKK+     I E L +L  L E ++K+ +++     + E F     P  
Sbjct: 119 F----GKISLIFKKVKNHKKIQENLQKLISL-ENLKKEGIKENIAHLLLEIF--FPTPHF 171

Query: 215 AKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            KDFE    ++S     L Y E+L     L   + QF  +I  P N E   A   + ++P
Sbjct: 172 VKDFETHKNFSSQHLNALKYIEMLFYMKNLERKKLQFNAKIACPNNSERLKA--FIASLP 229

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP 
Sbjct: 230 FQLTNDQQNAIKEIQSDLASPIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLMAPT 287

Query: 331 GILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            ILA+Q Y    +F+  Y +     VE++ G   +       E I H    ++IGT AL 
Sbjct: 288 SILAKQLYNEALKFLPPYFE-----VELLLGGSHKKRSNHLFETITH----VVIGTQALL 338

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKL----TQKATAPHVLLMTATPIPRTLVLTSLGD 442
            D     +  LVI DEQHRFG +QR +L    + K   PH L  +ATPIPRTL L     
Sbjct: 339 FDKRDLNEFALVITDEQHRFGTKQRYQLEKMASNKGNKPHSLQFSATPIPRTLALAKSAF 398

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S
Sbjct: 399 VKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLS 457

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E  +   + F   +    G+  D +KE V++ F+  +  +L+ATT+IEVGI +   S+
Sbjct: 458 LSEGASFWQKRF-KKVYTTSGQ--DKNKEEVIEEFRE-SGSILLATTLIEVGISLPRLSV 513

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF IAE
Sbjct: 514 MVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFKIAE 569

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DL+ RK G++L G +QSG
Sbjct: 570 LDLEYRKSGDLLQGGEQSG 588


>gi|315932221|gb|EFV11164.1| DEAD/DEAH box helicase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 541

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 210/379 (55%), Gaps = 23/379 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE A  +ILQD      M R+L GDVG GKT VA+ A+   V++G  A + AP 
Sbjct: 29  FIYTSDQEKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPT 88

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L+ QHY+ +KK      I V  +      A +++ L+ +   +A +++GTHAL   S+
Sbjct: 89  TLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALL--SV 146

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKI 448
           +   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR+L   L+S+    +  +
Sbjct: 147 ECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSV--L 204

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
              P  R  ++T +   +   + E I R    L  G + ++I   I   ++   + ++E 
Sbjct: 205 QTPPEDRMDVRTFVKENDDALLKEAIAR---ELRRGGQIFYIHNHIASIEQCK-KHLLEL 260

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F++L       I I+H ++    +E  M  F+N    LL++T+++E GID+ +A+ II+E
Sbjct: 261 FSTLR------ILILHSKIDAKVQEEEMLKFENKEYDLLLSTSIVESGIDLPNANTIIVE 314

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIA 621
            +  FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L++      G ++A
Sbjct: 315 KSNRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSLESNSFLGAGSVLA 374

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G +LG+ QSG
Sbjct: 375 YHDLEIRGGGNLLGVDQSG 393


>gi|332299515|ref|YP_004441436.1| transcription-repair coupling factor [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176578|gb|AEE12268.1| transcription-repair coupling factor [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 1115

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 130/410 (31%), Positives = 214/410 (52%), Gaps = 18/410 (4%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           IAL   RK+   + G   + +  +  ++  +  +  T  Q  AI+ I  DM     M R+
Sbjct: 518 IALYAARKE---QPGFAFSPDSYLQHEMEASFAYEETPDQLKAIEQIKADMESNRPMDRL 574

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA+ A   AV    Q  ++ P  ILA QHY+   +  +     +E ++ 
Sbjct: 575 VCGDVGFGKTEVAVRAAFKAVADSKQVAVLVPTTILAYQHYQTFSQRLEGLPCRIEYLSR 634

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                  +  L+ +A G+  I+IGTH L    + +  L L+I+DE+ +FGV+ + +L + 
Sbjct: 635 AKSDKQSKAILKDLADGRVDILIGTHRLLGKGVTFKSLGLLIIDEEQKFGVKAKEQLRKL 694

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                 L ++ATPIPRTL  + +G  D+S I   P  R+P+ T +I  ++ + + + +  
Sbjct: 695 QVNVDTLTLSATPIPRTLQFSLMGARDLSNINTPPRNRQPVTTRLIRWSQ-ETIADAIGY 753

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+   + +++  +IE        S+      + E      IAI HGR++  + E ++  
Sbjct: 754 ELARHGQVFFVHNRIE--------SIHGVAGQIEECVPGIRIAIAHGRLTPSETEQILLD 805

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F      LL+ATT+IE GID+ + + I+I +A  +GL+ LHQLRGRVGRG + + C L+ 
Sbjct: 806 FAERKYDLLLATTIIENGIDMPNVNTILINSAHRYGLSDLHQLRGRVGRGSQRAYCYLIT 865

Query: 597 HP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
            P   L++ +  R+  +++  D   G  IA +DL  R  G ILG +QSG 
Sbjct: 866 PPLGTLTEAAARRVKAIESFSDLGSGMRIALQDLDIRGAGNILGTEQSGF 915


>gi|313886626|ref|ZP_07820338.1| transcription-repair coupling factor [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923922|gb|EFR34719.1| transcription-repair coupling factor [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 1115

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 130/410 (31%), Positives = 214/410 (52%), Gaps = 18/410 (4%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           IAL   RK+   + G   + +  +  ++  +  +  T  Q  AI+ I  DM     M R+
Sbjct: 518 IALYAARKE---QPGFAFSPDSYLQHEMEASFAYEETPDQLKAIEQIKADMESNRPMDRL 574

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA+ A   AV    Q  ++ P  ILA QHY+   +  +     +E ++ 
Sbjct: 575 VCGDVGFGKTEVAIRAAFKAVADSKQVAVLVPTTILAYQHYQTFSQRLEGLPCRIEYLSR 634

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                  +  L+ +A G+  I+IGTH L    + +  L L+I+DE+ +FGV+ + +L + 
Sbjct: 635 AKSDKQSKAILKDLADGRVDILIGTHRLLGKEVTFKSLGLLIIDEEQKFGVKAKEQLRKL 694

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                 L ++ATPIPRTL  + +G  D+S I   P  R+P+ T +I  ++ + + + +  
Sbjct: 695 QVNVDTLTLSATPIPRTLQFSLMGARDLSNINTPPRNRQPVTTRLIRWSQ-ETIADAIGY 753

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+   + +++  +IE        S+      + E      IAI HGR++  + E ++  
Sbjct: 754 ELARHGQVFFVHNRIE--------SIHGVAGQIEECVPGIRIAIAHGRLTPSETEQILLD 805

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F      LL+ATT+IE GID+ + + I+I +A  +GL+ LHQLRGRVGRG + + C L+ 
Sbjct: 806 FAERKYDLLLATTIIENGIDMPNVNTILINSAHRYGLSDLHQLRGRVGRGSQRAYCYLIT 865

Query: 597 HP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
            P   L++ +  R+  +++  D   G  IA +DL  R  G ILG +QSG 
Sbjct: 866 PPLGTLTEAAARRVKAIESFSDLGSGMRIALQDLDIRGAGNILGTEQSGF 915


>gi|254563490|ref|YP_003070585.1| transcription repair coupling protein, ATP-dependent helicase
            [Methylobacterium extorquens DM4]
 gi|254270768|emb|CAX26773.1| transcription repair coupling protein, ATP-dependent helicase
            [Methylobacterium extorquens DM4]
          Length = 1196

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 137/396 (34%), Positives = 216/396 (54%), Gaps = 19/396 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T+ Q +AI  +L D++    M R++ GDVG GKT VAL A  AA  +G Q  ++ P 
Sbjct: 644  FQETEDQANAIDAVLDDLNAGRPMDRLVCGDVGFGKTEVALRAAFAAAISGKQVAVVVPT 703

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QH+    +  +   I V  ++  +    +R+    +A G   I++GTHAL   ++
Sbjct: 704  TLLARQHFRTFAERFKGLPINVAQLSRFVSAGEQRQNRAGLADGTVDIVVGTHALLAKNV 763

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L L+IVDE+  FGV  + +L       HVL ++ATPIPRTL L   G  ++S I  
Sbjct: 764  AFKDLGLIIVDEEQHFGVAHKERLKALQADVHVLTLSATPIPRTLQLAMTGVRELSIIAT 823

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R  ++T + P + +  V E L      G +++++ P+IE+  E      V+RF   
Sbjct: 824  PPMDRLAVRTFVTPFDPL-LVREALLRERYRGGQSFYVAPRIEDLAE------VKRFLDT 876

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             E   +++A+ HG+M+    E VM +F  G   +L++TT++E G+D+  A+ +I+  A+ 
Sbjct: 877  -EMPETTVAVAHGQMAAGQLEDVMTAFYEGKYDVLLSTTIVESGLDIPTANTLIVHRADM 935

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEE 623
            FGLA L+QLRGRVGR +  +    L+  P    L+  +  RL VL++ +    GF +A  
Sbjct: 936  FGLAALYQLRGRVGRSK--ARAYALFTTPANRQLTTQAEQRLKVLQSLDTLGAGFQLASH 993

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            DL  R  G +LG  QSG  K +    EL+  +LE A
Sbjct: 994  DLDIRGAGNLLGDAQSGHIKEV--GYELYQQMLEDA 1027


>gi|308064280|gb|ADO06167.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Sat464]
          Length = 621

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 190/619 (30%), Positives = 294/619 (47%), Gaps = 72/619 (11%)

Query: 44  LLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           LL Y P  + D    +H+   +S + E  I+    Y      F   KR  YK L      
Sbjct: 20  LLVYTPKGYKDLNLLKHFELGLSGVLEVDILDKRNYAKVLKIFAYSKRF-YKNLE----- 73

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
               L F+  +    N F  G  + + GK+++             F+ +  +N P I   
Sbjct: 74  ----LVFFNYSAFHHNQFKTGESLFIYGKLEQSS-----------FNQAYIINTPKILTE 118

Query: 160 YSLPTGLSVDLFKKI-----IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           +    G    +FKK+     I E L +L  L E ++K+ +++     + E F     P  
Sbjct: 119 F----GKISLIFKKVKNHKKIQENLQKLISL-ENLKKEGIKENIAHLLLEIF--FPTPHF 171

Query: 215 AKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            KDFE    ++S     L Y E+L     L   + QF  +I  P N E   A   + ++P
Sbjct: 172 VKDFETHKNFSSQHLNALKYIEMLFYMKNLERKKLQFNAKIACPNNSERLKA--FIASLP 229

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP 
Sbjct: 230 FQLTNDQQNAIKEIQSDLASPIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLMAPT 287

Query: 331 GILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            ILA+Q Y    +F+  Y +     VE++ G   +       E I H    ++IGT AL 
Sbjct: 288 SILAKQLYNEALKFLPPYFE-----VELLLGGSHKKRSNHLFETITH----VVIGTQALL 338

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGD 442
            D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L     
Sbjct: 339 FDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGHKPHSLQFSATPIPRTLALAKSAF 398

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S
Sbjct: 399 VKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLS 457

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E  +   + F   +    G+  D +KE V++ F+  +  +L+ATT+IEVGI +   S+
Sbjct: 458 LSEGASFWQKRF-KKVYTTSGQ--DKNKEEVIEEFRE-SGSILLATTLIEVGISLPRLSV 513

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF IAE
Sbjct: 514 MVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFKIAE 569

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DL+ RK G++L G +QSG
Sbjct: 570 LDLEYRKSGDLLQGGEQSG 588


>gi|240140979|ref|YP_002965459.1| transcription repair coupling protein, ATP-dependent helicase
            [Methylobacterium extorquens AM1]
 gi|240010956|gb|ACS42182.1| transcription repair coupling protein, ATP-dependent helicase
            [Methylobacterium extorquens AM1]
          Length = 1196

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 137/396 (34%), Positives = 216/396 (54%), Gaps = 19/396 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T+ Q +AI  +L D++    M R++ GDVG GKT VAL A  AA  +G Q  ++ P 
Sbjct: 644  FQETEDQANAIDAVLDDLNAGRPMDRLVCGDVGFGKTEVALRAAFAAAISGKQVAVVVPT 703

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QH+    +  +   I V  ++  +    +R+    +A G   I++GTHAL   ++
Sbjct: 704  TLLARQHFRTFAERFKGLPINVAQLSRFVSAGEQRQNRAGLADGTVDIVVGTHALLAKNV 763

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L L+IVDE+  FGV  + +L       HVL ++ATPIPRTL L   G  ++S I  
Sbjct: 764  AFKDLGLIIVDEEQHFGVAHKERLKALQADVHVLTLSATPIPRTLQLAMTGVRELSIIAT 823

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R  ++T + P + +  V E L      G +++++ P+IE+  E      V+RF   
Sbjct: 824  PPMDRLAVRTFVTPFDPL-LVREALLRERYRGGQSFYVAPRIEDLAE------VKRFLDT 876

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             E   +++A+ HG+M+    E VM +F  G   +L++TT++E G+D+  A+ +I+  A+ 
Sbjct: 877  -EMPETTVAVAHGQMAAGQLEDVMTAFYEGKYDVLLSTTIVESGLDIPTANTLIVHRADM 935

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEE 623
            FGLA L+QLRGRVGR +  +    L+  P    L+  +  RL VL++ +    GF +A  
Sbjct: 936  FGLAALYQLRGRVGRSK--ARAYALFTTPANRQLTTQAEQRLKVLQSLDTLGAGFQLASH 993

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            DL  R  G +LG  QSG  K +    EL+  +LE A
Sbjct: 994  DLDIRGAGNLLGDAQSGHIKEV--GYELYQQMLEDA 1027


>gi|163853560|ref|YP_001641603.1| transcription-repair coupling factor [Methylobacterium extorquens
            PA1]
 gi|163665165|gb|ABY32532.1| transcription-repair coupling factor [Methylobacterium extorquens
            PA1]
          Length = 1196

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 137/396 (34%), Positives = 216/396 (54%), Gaps = 19/396 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T+ Q +AI  +L D++    M R++ GDVG GKT VAL A  AA  +G Q  ++ P 
Sbjct: 644  FQETEDQANAIDAVLDDLNAGRPMDRLVCGDVGFGKTEVALRAAFAAAISGKQVAVVVPT 703

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA+QH+    +  +   I V  ++  +    +R+    +A G   I++GTHAL   ++
Sbjct: 704  TLLARQHFRTFAERFKGLPINVAQLSRFVSAGDQRQNRAGLADGTVDIVVGTHALLAKNV 763

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L L+IVDE+  FGV  + +L       HVL ++ATPIPRTL L   G  ++S I  
Sbjct: 764  AFKDLGLIIVDEEQHFGVAHKERLKALQADVHVLTLSATPIPRTLQLAMTGVRELSIIAT 823

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R  ++T + P + +  V E L      G +++++ P+IE+  E      V+RF   
Sbjct: 824  PPMDRLAVRTFVTPFDPL-LVREALLRERYRGGQSFYVAPRIEDLAE------VKRFLDT 876

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             E   +++A+ HG+M+    E VM +F  G   +L++TT++E G+D+  A+ +I+  A+ 
Sbjct: 877  -EMPETTVAVAHGQMAAGQLEDVMTAFYEGKYDVLLSTTIVESGLDIPTANTLIVHRADM 935

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTED---GFLIAEE 623
            FGLA L+QLRGRVGR +  +    L+  P    L+  +  RL VL++ +    GF +A  
Sbjct: 936  FGLAALYQLRGRVGRSK--ARAYALFTTPANRQLTTQAEQRLKVLQSLDTLGAGFQLASH 993

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            DL  R  G +LG  QSG  K +    EL+  +LE A
Sbjct: 994  DLDIRGAGNLLGDAQSGHIKEV--GYELYQQMLEDA 1027


>gi|49474197|ref|YP_032239.1| transcription repair coupling factor [Bartonella quintana str.
            Toulouse]
 gi|49239701|emb|CAF26076.1| Transcription repair coupling factor [Bartonella quintana str.
            Toulouse]
          Length = 1166

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 127/405 (31%), Positives = 220/405 (54%), Gaps = 20/405 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q+ AI  +L+D++    M R++ GDVG GKT VA+ +   A   G Q  ++ P
Sbjct: 616  PYEETEDQKDAIDAVLEDLASGKPMDRLICGDVGFGKTEVAIRSAFVAALNGYQVAVVVP 675

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L++QHY+      Q   + +   +  +      +  + ++ G   I++GTHAL   +
Sbjct: 676  TTLLSRQHYKTFLSRFQGLPVKIAHASRLVKTKEFTQVKKGVSDGTIDIVVGTHALLSGA 735

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + + +L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT
Sbjct: 736  VNFLRLGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRTLGLALSGVRELSLIT 795

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R  ++T I P + +  + E L      G +++++CP+I +       + VE +  
Sbjct: 796  TPPIDRMAVRTFIAPFDTL-VIRETLLREYYRGGQSFYVCPRISD------LAFVEEY-- 846

Query: 510  LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L  H       + HG+M     +++M++F +G   +L++TT+IE G+D+  A+ +I+  A
Sbjct: 847  LKTHVPELKFVVAHGQMPAGQLDNIMNAFYDGQYDVLLSTTIIESGLDIPTANTLIVHRA 906

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEE 623
            E FGL+ L+QLRGRVGR ++ +  +  +     L+  +  RL VL++      GF +A  
Sbjct: 907  EIFGLSALYQLRGRVGRSKQRAYALFTFPSGKVLTAAADRRLKVLQSLNTLGSGFQLASH 966

Query: 624  DLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
            D+  R  G  LG +QSG  K   F + Q  L +++ E+  KD K 
Sbjct: 967  DMDIRGSGNFLGEEQSGHIKEVGFELYQKMLEEAVAEL--KDGKQ 1009


>gi|257068518|ref|YP_003154773.1| transcription-repair coupling factor Mfd [Brachybacterium faecium DSM
            4810]
 gi|256559336|gb|ACU85183.1| transcription-repair coupling factor Mfd [Brachybacterium faecium DSM
            4810]
          Length = 1211

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 206/378 (54%), Gaps = 19/378 (5%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q   I D+  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++AP 
Sbjct: 642  FVETPDQLVTIDDVKADMEKSVPMDRLILGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPT 701

Query: 331  GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQH + F ++YT    + V  ++     A     +E +  G   I+IGTH L   +
Sbjct: 702  TLLAQQHLDTFAERYT-GFPVTVRGLSRFQNPADSEATVEGLRDGSVDIVIGTHRLLTGN 760

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +++  L L+IVDE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S + 
Sbjct: 761  VRFKDLGLLIVDEEQRFGVEHKETLKALRTNVDVLSMSATPIPRTLEMAVTGIRELSILA 820

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
              P  R P+ T +             + +L EG + ++I  ++E  ++  ++ R +V   
Sbjct: 821  TPPEERHPVLTYVGAQEDKQVTAAIRRELLREG-QVFYIHNRVEDIDRVAAHLRELVP-- 877

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                    + + + HG+M++   E V+  F      +L+ TT++E G+D+ +A+ +I+EN
Sbjct: 878  -------DARVQVAHGKMNEHQLERVLIDFWERDFDVLVCTTIVETGLDISNANTLIVEN 930

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622
            A+ FGL+QLHQLRGRVGR  E +    LY+   PL++ ++ RL+ L    D   G  +A 
Sbjct: 931  ADRFGLSQLHQLRGRVGRSSERAYAYFLYNATKPLTELAHDRLTTLATNTDLGAGMQVAM 990

Query: 623  EDLKQRKEGEILGIKQSG 640
            +DL+ R  G +LG +QSG
Sbjct: 991  KDLEIRGAGNLLGGEQSG 1008


>gi|297380724|gb|ADI35611.1| transcription-repair coupling factor [Helicobacter pylori v225d]
          Length = 999

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 134/401 (33%), Positives = 217/401 (54%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  G   +++GTHA+     
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVGLGLIDVLVGTHAIL--GA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKI 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIHR---ELRRNGQIFYIHNHIASISKVKTKLEELIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ I+I+
Sbjct: 716 LK---------IAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIVID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|261838796|gb|ACX98562.1| ATP-dependent DNA helicase [Helicobacter pylori 51]
          Length = 621

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 189/619 (30%), Positives = 293/619 (47%), Gaps = 72/619 (11%)

Query: 44  LLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           LL Y P  + D    +H+   +S + E  I+    Y      F   KR  YK L      
Sbjct: 20  LLVYTPKGYKDLNLLKHFELGLSGVLEVDILDKRNYAKVLKIFAYSKRF-YKNLE----- 73

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
               L F+  +    N F  G  + + GK+++             F+ +  +N P I   
Sbjct: 74  ----LVFFNYSAFHYNQFKTGESLFIYGKLEQSS-----------FNQAYIINTPKILTE 118

Query: 160 YSLPTGLSVDLFKKI-----IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           +    G    +FKK+     I E L +L  L E ++K+ +++     + E F     P  
Sbjct: 119 F----GKISLIFKKVKNHKKIQENLQKLISL-ENLKKEGIKENIAHLLLEIF--FPTPHF 171

Query: 215 AKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            KDFE    ++S     L Y E+L     L   + QF  +I  P N E    +  + ++P
Sbjct: 172 VKDFETHKNFSSQHLNALKYIEMLFYMKNLERKKLQFSAKIACPNNSER--LKAFITSLP 229

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP 
Sbjct: 230 FKLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLMAPT 287

Query: 331 GILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            ILA+Q Y    +F+  Y +     VE++ G   +       E I H    ++IGT AL 
Sbjct: 288 SILAKQLYNEALKFLPPYFE-----VELLLGGSHKKRSNHLFETITH----VVIGTQALL 338

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKL----TQKATAPHVLLMTATPIPRTLVLTSLGD 442
            D     +  LVI DEQHRFG +QR +L    + K+  PH L  +ATPIPRTL L     
Sbjct: 339 FDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKSNKPHSLQFSATPIPRTLALAKSAF 398

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +  + I E P  R+ I+T+++       V+E++   +++  +   + P + E ++  + S
Sbjct: 399 VKTTMIREIPYPRE-IETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLS 457

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E  +   + F   +    G+  D +KE V++ F+     +L+ATT+IEVGI +   S+
Sbjct: 458 LSEGASFWQKRF-KKVYTTSGQ--DKNKEEVIEEFREFGS-ILLATTLIEVGISLPRLSV 513

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF IAE
Sbjct: 514 MVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFKIAE 569

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DL+ RK G++L G +QSG
Sbjct: 570 LDLEYRKSGDLLQGGEQSG 588


>gi|315928014|gb|EFV07334.1| DEAD/DEAH box helicase family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 589

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 211/379 (55%), Gaps = 23/379 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q+ A  +ILQD      M R+L GDVG GKT VA+ A+   V++G  A + AP 
Sbjct: 77  FIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPT 136

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L+ QHY+ +KK      I V  +      A +++ L+ +   +A +++GTHAL   S+
Sbjct: 137 TLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALL--SV 194

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKI 448
           +   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR+L   L+S+    +  +
Sbjct: 195 ECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSV--L 252

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
              P  R  ++T +   +   + E I R    L  G + ++I   I   ++   + ++E 
Sbjct: 253 QTPPEDRMDVRTFVKENDDALLKEAIAR---ELRRGGQIFYIHNHIASIEQCK-KHLLEL 308

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F++L       I I+H ++    +E  M  F+N    LL++T+++E GID+ +A+ II+E
Sbjct: 309 FSTLR------ILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVESGIDLPNANTIIVE 362

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIA 621
            ++ FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L++      G ++A
Sbjct: 363 KSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSLESNSFLGAGSILA 422

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G +LG+ QSG
Sbjct: 423 YHDLEIRGGGNLLGVDQSG 441


>gi|314929229|gb|EFS93060.1| transcription-repair coupling factor [Propionibacterium acnes
            HL044PA1]
          Length = 1194

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 198/377 (52%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T  Q + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 639  YVETPDQLTTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 698

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +L QQH++   +      + V  ++     A  R+ LE +  G   +++GTH L    +
Sbjct: 699  TLLVQQHFQTFTERYAGFPVKVAALSRFQTDAEAREVLEGLKRGTVDVVVGTHRLLAKEV 758

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I  
Sbjct: 759  EFKDLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIAT 818

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T   P +   +V+  ++  L+   + ++I  +++  EK     R +V    
Sbjct: 819  PPEERHPVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAVKLRELVPE-- 875

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A
Sbjct: 876  -------ARIVTAHGQMNEKQLERIMVDFWERRADVLVCTTIVESGIDIPTANTLLIDRA 928

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
            +  GL+QLHQLRGRVGR         LY    PLS+ ++ RL+ +    D   G  IA +
Sbjct: 929  DLMGLSQLHQLRGRVGRSRARGYAYFLYPADKPLSQTAHDRLATMAAHTDLGAGMAIAMK 988

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 989  DLEIRGAGNLLGGEQSG 1005


>gi|111022724|ref|YP_705696.1| transcription repair coupling factor [Rhodococcus jostii RHA1]
 gi|110822254|gb|ABG97538.1| transcription repair coupling factor [Rhodococcus jostii RHA1]
          Length = 1215

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 196/375 (52%), Gaps = 13/375 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 651  FTETHDQLTVISEVKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 710

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LAQQH +   +      + V  ++        ++ +  +A G+  +++GTH L Q  I
Sbjct: 711  TLLAQQHLQTFTERMAAFPVTVRGLSRFTDAGDSKETIAGMADGEIDVVVGTHRLLQTGI 770

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 771  RWKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILT 830

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R PI T +             + +L +G+  Y         + S+     +R   L
Sbjct: 831  PPEERHPILTYVGAYADKQVAAAIRRELLRDGQVFYV------HNRVSSIDKSAQRIREL 884

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + + + HG+M++   E  +  F      +L+ TT+IE G+D+ +A+ +I+E A+ 
Sbjct: 885  VPE--ARVVVAHGQMNEDTLERTVQGFWERDYDVLVCTTIIETGLDISNANTLIVERADS 942

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
             GL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    D   G  +A +DL
Sbjct: 943  LGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDL 1002

Query: 626  KQRKEGEILGIKQSG 640
            + R  G +LG +QSG
Sbjct: 1003 EIRGAGNVLGAEQSG 1017


>gi|167772369|ref|ZP_02444422.1| hypothetical protein ANACOL_03746 [Anaerotruncus colihominis DSM
           17241]
 gi|167665472|gb|EDS09602.1| hypothetical protein ANACOL_03746 [Anaerotruncus colihominis DSM
           17241]
          Length = 1157

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 199/381 (52%), Gaps = 17/381 (4%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           R   +  T  Q   I +I  DM     M R+L GDVG GKT VAL A    V  G Q  +
Sbjct: 610 RRFAYDETDDQLRCIDEIKADMESSVPMDRLLCGDVGFGKTEVALRAAFKCVMDGKQCAL 669

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P  ILA QHY+ + +  +   + V++++       +++ L+ +  G+  I+IGTH L 
Sbjct: 670 LVPTTILAWQHYQTVTRRMEGFPVKVDLLSRFRSPREQKQVLDELRRGEIDIVIGTHRLV 729

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           QD +++  L L I+DE+ RFGV+ + K  +   A  VL ++ATPIPRTL +   G  D+S
Sbjct: 730 QDDVKFKDLGLAIIDEEQRFGVRHKEKFKEIRAAVDVLTLSATPIPRTLNMAMSGIRDMS 789

Query: 447 KITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            I E P  R P++T ++  +   + + IER    L  G + +++  ++E     +  S  
Sbjct: 790 VIEEAPQDRHPVQTYVVEHDWGVVAQAIER---ELRRGGQVFYLHNRVE-----SIDSCA 841

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            R   L     + I   HG+M++     V     +    +L+ TT+IE G+DV + + +I
Sbjct: 842 YRIKQLVPQ--ARIVTAHGKMTEEQLSRVWRQLLDYEVDILVCTTIIETGVDVPNCNTLI 899

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFL 619
           IE+A+  GL+QL+QLRGRVGR    +   L +     LS  +  RL+ ++       GF 
Sbjct: 900 IEDADRMGLSQLYQLRGRVGRSNRRAFAYLTFRRDKQLSDVASKRLAAIREFTTFGSGFR 959

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           IA  DL+ R  G ILG +Q G
Sbjct: 960 IAMRDLEIRGAGNILGAQQHG 980


>gi|313835372|gb|EFS73086.1| transcription-repair coupling factor [Propionibacterium acnes
            HL037PA2]
 gi|314972378|gb|EFT16475.1| transcription-repair coupling factor [Propionibacterium acnes
            HL037PA3]
 gi|328908370|gb|EGG28129.1| transcription-repair coupling factor [Propionibacterium sp. P08]
          Length = 1194

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 198/377 (52%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T  Q + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 639  YVETPDQLTTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 698

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +L QQH++   +      + V  ++     A  R+ LE +  G   +++GTH L    +
Sbjct: 699  TLLVQQHFQTFTERYAGFPVKVAALSRFQTDAEAREVLEGLKRGTVDVVVGTHRLLAKEV 758

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I  
Sbjct: 759  EFKDLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIAT 818

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R P+ T   P +   +V+  ++  L+   + ++I  +++  EK     R +V    
Sbjct: 819  PPEERHPVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAVKLRELVPE-- 875

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A
Sbjct: 876  -------ARIVTAHGQMNEKQLERIMVDFWERRADVLVCTTIVESGIDIPTANTLLIDRA 928

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
            +  GL+QLHQLRGRVGR         LY    PLS+ ++ RL+ +    D   G  IA +
Sbjct: 929  DLMGLSQLHQLRGRVGRSRARGYAYFLYPADKPLSQTAHDRLATMAAHTDLGAGMAIAMK 988

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 989  DLEIRGAGNLLGGEQSG 1005


>gi|300023171|ref|YP_003755782.1| transcription-repair coupling factor [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524992|gb|ADJ23461.1| transcription-repair coupling factor [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 1161

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 139/405 (34%), Positives = 216/405 (53%), Gaps = 33/405 (8%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T+ Q ++I+ +L D++    M R++ GDVG GKT VAL A       G Q  ++ 
Sbjct: 608 FPYEETEDQATSIESVLADLASGRPMDRLVCGDVGFGKTEVALRAAFVGAMNGLQVAVVV 667

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH-------GQAHIIIG 381
           P  +LA+QH+   + +TQ  Q +   I     QA R    + +A        G   I++G
Sbjct: 668 PTTLLARQHF---RTFTQRFQGLPVKIA----QASRMVGAKGLAEVKAGLKSGDIDIVVG 720

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           THAL   +I++ +L L+I+DE+  FGV  + +L +     HVL ++ATPIPRTL L   G
Sbjct: 721 THALLGKTIEFQRLGLLIIDEEQHFGVNHKERLKKMREDVHVLTLSATPIPRTLQLALTG 780

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESN 499
             ++S IT  P  R  ++T I P    D VI  E L+     G + Y++ P+I     S+
Sbjct: 781 VRELSLITTPPVDRMAVRTFISP---FDPVILKEALRRERFRGGQTYYVAPRI-----SD 832

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              + E           + A   G+MS  + E VM +F  G   +L++T ++E G+DV +
Sbjct: 833 LDDIAEFLREAVPDLVFARAT--GQMSPTELEDVMTAFYEGKYDILLSTAIVESGLDVPN 890

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED- 616
           A+ +I+  A+ FGLAQL+QLRGRVGR +  +   +   P   L++ +  RL VL++ +  
Sbjct: 891 ANTLIVHRADMFGLAQLYQLRGRVGRSKTRAYAYITTPPDKKLTEGAEKRLKVLQSLDTL 950

Query: 617 --GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             GF +A  DL  R  G +LG +QSG  + +    EL+ S+LE A
Sbjct: 951 GAGFSLASHDLDIRGAGNLLGEEQSGHIREVGF--ELYQSMLEEA 993


>gi|325971064|ref|YP_004247255.1| transcription-repair coupling factor [Spirochaeta sp. Buddy]
 gi|324026302|gb|ADY13061.1| transcription-repair coupling factor [Spirochaeta sp. Buddy]
          Length = 1090

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 131/410 (31%), Positives = 223/410 (54%), Gaps = 15/410 (3%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q S I+DI  DM +   M R++ GDVG GKT +A  A+  AV  G Q   +
Sbjct: 545 SFPFDETADQLSCIEDIKDDMEKPIVMDRLVCGDVGYGKTEIAFRAVFKAVMGGKQVAFL 604

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  ILA+QHY+   K      +    ++  + +  +++ L  +A G+  ++ GTH + Q
Sbjct: 605 APTTILAEQHYQNFLKRLGTFPVRCAQLSRIVTKKEQKQTLLALAEGKVDVLFGTHRILQ 664

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I Y  L L++VDE+ RFGV+ + ++     +   L ++ATPIPRTL ++ L   D+S 
Sbjct: 665 KDIMYRDLGLLVVDEEQRFGVKDKERIKTLRASIDSLSLSATPIPRTLYMSLLKIRDMSL 724

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           +   P  R+PI+T I   N    +++ ++  +    + +++  +IE + E     VV + 
Sbjct: 725 LATPPIARRPIETYIGEYNE-QTIVKAIRDEVERKGQVFFLHNRIESQDE-----VVFQL 778

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L       I   HG+M     E  M  F +   ++L++TT+IE GID+ + + III+ 
Sbjct: 779 TKLLPDVI--IESAHGQMDSTKLEDTMRRFIHEGIQVLVSTTIIENGIDIPNVNTIIIDR 836

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVL-KNTE--DGFLIAE 622
           A+ +GL+QL+QLRGRVGR +  +   L Y     LS+ +  RL ++ ++TE   GF +A 
Sbjct: 837 ADRYGLSQLYQLRGRVGRNDSQAYAYLFYPQGSALSEIALKRLKIISEHTELGSGFKVAM 896

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           +D++ R  G +LG +QSG         +++  +L+ A +D +++  +D +
Sbjct: 897 KDMELRGTGNLLGREQSG--HLATVGLDMYIRILDEAIRDLQNVGVKDEE 944


>gi|326333885|ref|ZP_08200118.1| transcription-repair coupling factor [Nocardioidaceae bacterium
            Broad-1]
 gi|325948467|gb|EGD40574.1| transcription-repair coupling factor [Nocardioidaceae bacterium
            Broad-1]
          Length = 1198

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 136/424 (32%), Positives = 216/424 (50%), Gaps = 20/424 (4%)

Query: 224  ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
            AR R A  E+ A  I L   R+  K   G     +    +++    PF  T  Q + I +
Sbjct: 603  ARARKAVREIAAELIKLYAARQATK---GFQYGPDNPWQRELEDAFPFQETADQLAVIDE 659

Query: 284  ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
            + QDM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L  QH     +
Sbjct: 660  VKQDMMRPVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVSQHLSTFME 719

Query: 344  YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                  + V  ++         + +  +  G   I++GTH L    +++  L L+I+DE+
Sbjct: 720  RMSGFPVNVRGLSRFQTDKEAAEVMAGLTDGTIDIVVGTHRLLNKDVRFKDLGLIIIDEE 779

Query: 404  HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             RFGV+ +  + +  T+   L M+ATPIPRTL ++  G  ++S IT  P  R P+ T + 
Sbjct: 780  QRFGVEHKEAMKRLRTSVDFLSMSATPIPRTLEMSITGIREMSTITTPPEERHPVLTYVG 839

Query: 464  PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAII 521
                   V    + +L EG + ++I  ++   EK  +  R +V           + +A+ 
Sbjct: 840  AYEDRQIVAAVRRELLREG-QVFYIHNRVNSIEKAAARIRELVPE---------ARVAVA 889

Query: 522  HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            HG+M++   E VM  F      +L+ TT++E G+DV +A+ +IIE A+  GL+QLHQLRG
Sbjct: 890  HGQMNEKQLEQVMVDFWEKEFDVLVCTTLVESGLDVSNANTMIIERADTLGLSQLHQLRG 949

Query: 582  RVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636
            RVGR  E +    LY    PL++ ++ RL+ L    D   G  IA +DL+ R  G +LG 
Sbjct: 950  RVGRSRERAYAYFLYPGEKPLTETAHERLATLAQHSDLGGGMAIAMKDLEIRGAGNLLGG 1009

Query: 637  KQSG 640
            +QSG
Sbjct: 1010 EQSG 1013


>gi|313848365|emb|CBY17369.1| putative transcription-repair coupling factor [Chlamydophila
           psittaci RD1]
          Length = 1085

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 136/387 (35%), Positives = 201/387 (51%), Gaps = 13/387 (3%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G+   K   + P+  T  Q  AI+ I  DM     M R++ GD G GKT V + A   AV
Sbjct: 545 GEEVIKFEESFPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAV 604

Query: 319 EAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             G  Q ++M P  ILA QHYE   +      I + +++        +K  E  A G   
Sbjct: 605 CDGQRQVIVMVPTTILANQHYETFTQRMAGLPINIAVLSRFSEGKALKKIFEDTAQGNID 664

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH L   ++++    L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL +
Sbjct: 665 ILIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDFLKERYPTIDCLTVSATPIPRTLYM 724

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +  G  D+S IT  P  R P+ T ++  N  + +   L+  L  G +AY I  +I    E
Sbjct: 725 SLSGARDLSLITMPPLDRLPVSTFVLEHNE-ETLSAALRHELLRGGQAYVIHNRI----E 779

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S FR      N + E   + IA+ HG+MS  +  S+   FK+    +L+AT +IE GID+
Sbjct: 780 SIFRLGNTIRNLVPE---ARIAVAHGQMSSDELASIFQKFKDQETNVLVATALIENGIDI 836

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE 615
            +A+ I+++ A+ FG+A L+Q++GRVGR    + C  L  +   LS  +  RL  L   E
Sbjct: 837 PNANTILVDQADKFGMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLQALNKQE 896

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              G  IA  DL+ R  G ILG  QSG
Sbjct: 897 YGGGMKIALHDLEIRGAGNILGTDQSG 923


>gi|257466621|ref|ZP_05630932.1| transcription-repair coupling factor [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917776|ref|ZP_07914016.1| transcription-repair coupling factor [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313691651|gb|EFS28486.1| transcription-repair coupling factor [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 983

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 210/377 (55%), Gaps = 13/377 (3%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P++ T +Q+ AI+D+ QDM     M R++ GDVG GKT +A+ A   A+    Q V++
Sbjct: 454 SFPYTETSAQKKAIQDVKQDMEMGKIMDRLICGDVGYGKTEIAIRATFKAIMDHKQVVLL 513

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  +LA+QHY   ++   N  I + +++       +++ LE+I +G   ++IGT  L  
Sbjct: 514 APTTVLAEQHYHRFQERFLNYPIEIAVLSRMKTPKEQKEILEKIKNGSIDLVIGTSRLLS 573

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +++  L  +I+DE+ +FGV+ + K  +     ++L MTATPIPRTL L+ LG  D+S 
Sbjct: 574 DDLEFKDLGFLIIDEEQKFGVKAKEKFKKIRGNLNILAMTATPIPRTLNLSLLGIRDLSI 633

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           +   P GRK IKT  I     + V   LK +  EG+  Y           ++ + + E+ 
Sbjct: 634 VDTPPDGRKTIKTFFIEKKEENIVKAILKELAREGQVFYVF---------NSVKRIEEKV 684

Query: 508 NSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             L +   S + I  IHG+MS  + +  ++ F+N    +L++TT+IE GID+ +A+ +II
Sbjct: 685 KELEKILPSYVKIDYIHGKMSGKELKYKIEQFENMQIDVLVSTTIIENGIDIENANTMII 744

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL--KNTEDGFLIAEE 623
           E  E  GL+Q++QLRGR+GRG   S C  +     SK +  R   L       G  ++ E
Sbjct: 745 EGMEKLGLSQIYQLRGRIGRGRRQSYCYCIISEYKSKKAEEREKSLIELGQGSGLDLSME 804

Query: 624 DLKQRKEGEILGIKQSG 640
           D++ R  GEILG KQ G
Sbjct: 805 DMRIRGAGEILGEKQHG 821


>gi|119953404|ref|YP_945613.1| transcription-repair coupling factor [Borrelia turicatae 91E135]
 gi|119862175|gb|AAX17943.1| transcription-repair coupling factor [Borrelia turicatae 91E135]
          Length = 1122

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 132/380 (34%), Positives = 210/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AI +I QDM     M R+L GDVG GKT VA+ A   AV    Q  I++P
Sbjct: 581 PYDETPDQLTAISEIKQDMMSLKVMDRLLCGDVGFGKTEVAMRAAFKAVMGKKQVAILSP 640

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             IL +QH+   K+  +N  I + +++  + ++  R  ++++  G+  IIIGTH +    
Sbjct: 641 TTILTEQHFNTFKQRFKNFPINIAMMSRFIKKSKERDIIKKLETGEIDIIIGTHKILSKK 700

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I Y  L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 701 IIYKNLGLIIIDEEQRFGVKEKEKLKEIKISVDCLALSATPIPRSLHMSLIKLRDISVLK 760

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+T +   +   I   IE     LS   + +++   I+E         ++  
Sbjct: 761 TPPQNRIKIETYVEEFSELLIKHAIEN---ELSRDGQVFFVHHNIQE---------LDLI 808

Query: 508 NSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            ++ E     + IA IH R+     E++M  F N + ++L+ATT+IE GID+ +A+ III
Sbjct: 809 KAMLEKMVPYARIATIHARLQGDQIENIMHDFINKSYQVLLATTIIENGIDIENANTIII 868

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLI 620
            NA  FGLAQL+QLRGRVGR  + +    LY  +  L++++  RL  +    +   GF I
Sbjct: 869 NNANRFGLAQLYQLRGRVGRSSQKAFAYFLYKENSSLNESAIERLRAISEFSELGTGFQI 928

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A +D++ R  G +LG +Q G
Sbjct: 929 AMKDMEIRGVGNLLGREQHG 948


>gi|239906714|ref|YP_002953455.1| transcription-repair coupling factor [Desulfovibrio magneticus
           RS-1]
 gi|239796580|dbj|BAH75569.1| transcription-repair coupling factor [Desulfovibrio magneticus
           RS-1]
          Length = 1148

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 127/380 (33%), Positives = 199/380 (52%), Gaps = 23/380 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI ++L DM +   M R++ GDVG GKT VAL A   AV  G Q  ++ P 
Sbjct: 603 FEETPDQERAIGEVLADMERPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVAMLCPT 662

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QHY+      +   + VE+++  +    R+  LE ++ G+  I++GTH +    +
Sbjct: 663 TVLAEQHYQNFAARLEGFPVRVEMLSRFVSPKRRKVVLEAVSRGEVDILVGTHRILSSDV 722

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
               + L+I+DE+ RFGV+ + +L         L +TATPIPRTL L+  G   +S I  
Sbjct: 723 AIPNIGLLILDEEQRFGVKHKERLKAFKKNIDALTLTATPIPRTLQLSLSGVRGLSVIET 782

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  RK + T ++  +   + EV+ R    L    + +W+  +++         V     
Sbjct: 783 PPPDRKTVDTALVERDEGFLREVLRR---ELDRQGQVFWVHNRVQ-----GLEDVTAYVK 834

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +L     + +A+ HG+MS+   E  M  F +G   +L+ T++IE G+D   A+ +I++NA
Sbjct: 835 TLAP--GAKVAMAHGQMSETALEEAMHGFWHGETDILVCTSIIESGLDFPRANTLIVDNA 892

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYH-----PPLSKNSYTRLSVLKNTE---DGFLI 620
             FGL QL+QLRGRVGR    +    +       P L++    RL V+ + +    GF +
Sbjct: 893 HMFGLGQLYQLRGRVGRSPRQAYAYFVVPSIEKVPELARK---RLRVILDMDYLGAGFQV 949

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A EDL+ R  G ILG  QSG
Sbjct: 950 AMEDLRLRGAGNILGEAQSG 969


>gi|188528292|ref|YP_001910979.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Shi470]
 gi|188144532|gb|ACD48949.1| DNA recombinase (recG) [Helicobacter pylori Shi470]
          Length = 623

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 190/619 (30%), Positives = 294/619 (47%), Gaps = 72/619 (11%)

Query: 44  LLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           LL Y P  + D    +H+   +S + E  I+    Y      F   KR  YK L      
Sbjct: 20  LLVYTPKGYKDLNLLKHFELGLSGVLEVDILDKRNYAKVLKIFAYSKRF-YKNLE----- 73

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
               L F+  +    N F  G  + + GK+++             F+ +  +N P I   
Sbjct: 74  ----LVFFNYSAFHHNQFKTGESLFIYGKLEQSS-----------FNQAYIINTPKILTE 118

Query: 160 YSLPTGLSVDLFKKI-----IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           +    G    +FKK+     I E L +L  L E ++K+ +++     + E F     P  
Sbjct: 119 F----GKISLIFKKVKNHKKIQENLQKLISL-ENLKKEGIKENIAHLLLEIF--FPTPHF 171

Query: 215 AKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            KDFE    ++S     L Y E+L     L   + QF  +I  P N E   A   + ++P
Sbjct: 172 VKDFETHKNFSSQHLNALKYIEMLFYMKNLERKKLQFNAKIACPNNSERFKA--FIASLP 229

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP 
Sbjct: 230 FQLTNDQQNAIKEIQSDLASPIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLMAPT 287

Query: 331 GILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            ILA+Q Y    +F+  Y +     VE++ G   +       E I H    ++IGT AL 
Sbjct: 288 SILAKQLYNEALKFLPPYFE-----VELLLGGSHKKRSNHLFETITH----VVIGTQALL 338

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGD 442
            D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L     
Sbjct: 339 FDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGHKPHSLQFSATPIPRTLALAKSAF 398

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S
Sbjct: 399 VKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLS 457

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E  +   + F   +    G+  D +KE V++ F+  +  +L+ATT+IEVGI +   S+
Sbjct: 458 LSEGASFWQKRF-KKVYTTSGQ--DKNKEEVIEEFRE-SGSILLATTLIEVGISLPRLSV 513

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF IAE
Sbjct: 514 MVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFKIAE 569

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DL+ RK G++L G +QSG
Sbjct: 570 LDLEYRKSGDLLQGGEQSG 588


>gi|329943213|ref|ZP_08291987.1| transcription-repair coupling factor [Chlamydophila psittaci Cal10]
 gi|332287793|ref|YP_004422694.1| transcription-repair coupling factor [Chlamydophila psittaci 6BC]
 gi|325507232|gb|ADZ18870.1| transcription-repair coupling factor [Chlamydophila psittaci 6BC]
 gi|328814760|gb|EGF84750.1| transcription-repair coupling factor [Chlamydophila psittaci Cal10]
 gi|328915051|gb|AEB55884.1| transcription-repair coupling factor [Chlamydophila psittaci 6BC]
          Length = 1083

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 136/387 (35%), Positives = 201/387 (51%), Gaps = 13/387 (3%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G+   K   + P+  T  Q  AI+ I  DM     M R++ GD G GKT V + A   AV
Sbjct: 543 GEEVIKFEESFPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAV 602

Query: 319 EAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             G  Q ++M P  ILA QHYE   +      I + +++        +K  E  A G   
Sbjct: 603 CDGQRQVIVMVPTTILANQHYETFTQRMAGLPINIAVLSRFSEGKALKKIFEDTAQGNID 662

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH L   ++++    L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL +
Sbjct: 663 ILIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDFLKERYPTIDCLTVSATPIPRTLYM 722

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +  G  D+S IT  P  R P+ T ++  N  + +   L+  L  G +AY I  +I    E
Sbjct: 723 SLSGARDLSLITMPPLDRLPVSTFVLEHNE-ETLSAALRHELLRGGQAYVIHNRI----E 777

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S FR      N + E   + IA+ HG+MS  +  S+   FK+    +L+AT +IE GID+
Sbjct: 778 SIFRLGNTIRNLVPE---ARIAVAHGQMSSDELASIFQKFKDQETNVLVATALIENGIDI 834

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE 615
            +A+ I+++ A+ FG+A L+Q++GRVGR    + C  L  +   LS  +  RL  L   E
Sbjct: 835 PNANTILVDQADKFGMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLQALNKQE 894

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              G  IA  DL+ R  G ILG  QSG
Sbjct: 895 YGGGMKIALHDLEIRGAGNILGTDQSG 921


>gi|15646148|ref|NP_208332.1| transcription-repair coupling factor (trcF) [Helicobacter pylori
           26695]
 gi|3914010|sp|O26066|MFD_HELPY RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|2314723|gb|AAD08581.1| transcription-repair coupling factor (trcF) [Helicobacter pylori
           26695]
          Length = 999

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 135/401 (33%), Positives = 216/401 (53%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  GQ   +IGTHA+     
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVELGQVDALIGTHAIL--GA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKT 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIYR---ELRRNGQIFYIHNHIASILKVKTKLEDLIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 L---------KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  +A
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESVA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|300813641|ref|ZP_07093966.1| TRCF domain protein [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512247|gb|EFK39422.1| TRCF domain protein [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 580

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 204/377 (54%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  + ++I +DM + + M R+L  DVG GKT VAL A   A+  G Q   + P 
Sbjct: 39  YEETDGQLLSSEEIKKDMEEAHPMDRLLCADVGYGKTEVALRAAFKAILDGKQVAFLVPT 98

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILAQQHY  + +  ++  + V I++    +  +++ +E++  G   II+GTH L    +
Sbjct: 99  TILAQQHYNIMVERFKDFPVEVGILSRFRTKKEQKETIEKLKAGIVDIIVGTHRLLSKDV 158

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+I+DE+ RFGV+ + KL         L ++ATPIPRTL ++ +G  D+S I E
Sbjct: 159 VFKDLGLLIIDEEQRFGVRHKEKLKMLKENIDTLTLSATPIPRTLQMSMIGIRDMSVIEE 218

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
            P  R P+KT ++  N +  V E +   +  G + Y++  ++   E K    R +V    
Sbjct: 219 PPEERFPVKTYVLEYNPL-MVREAILREVERGGQVYFVYNRVANMEYKLQQLRELVPEV- 276

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   S  + +G+M++ D E  M SF  G   +L+ +T+IE G+DV +A+ +II ++
Sbjct: 277 --------SFVMANGQMNEKDLEDTMLSFLRGDVDVLLCSTIIETGMDVQNANTMIITDS 328

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIAEE 623
              GL+QL+QLRGR+GR   ++     Y     +S+ +  RL  +K  TE   GF IA  
Sbjct: 329 NRLGLSQLYQLRGRIGRSSRVAYAYFTYEKDVSISEIAQKRLKTIKEFTEFGSGFKIALR 388

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G ILG KQ G
Sbjct: 389 DLEIRGSGSILGSKQHG 405


>gi|108563817|ref|YP_628133.1| ATP-dependent DNA helicase RecG [Helicobacter pylori HPAG1]
 gi|107837590|gb|ABF85459.1| DNA recombinase [Helicobacter pylori HPAG1]
          Length = 623

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 190/619 (30%), Positives = 296/619 (47%), Gaps = 72/619 (11%)

Query: 44  LLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           LL Y P  + D    +H+   +S + E  I+    Y      F   KR  YK L      
Sbjct: 20  LLVYTPKGYKDLNLLKHFELGLSGVLEVGILEKRNYAKVLKIFAYSKRF-YKNLE----- 73

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
               L F+  +    + F  G  + + GK+++             F+ +  +N P I   
Sbjct: 74  ----LVFFNYSAFHHSQFKTGESLFIYGKLEQSS-----------FNQAYIINTPKILTE 118

Query: 160 YSLPTGLSVDLFKKI-----IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           +    G    +FKK+     I E L +L  L E ++K+ +++     + E F     P  
Sbjct: 119 F----GKVYLIFKKVKNHKKIQENLQKLLSL-ENLKKEGVKENIARLLLEIF--FPTPHF 171

Query: 215 AKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            KDFE    + S     L Y E+L     L   + QF  +I  P N E   A   + ++P
Sbjct: 172 VKDFETNKNFPSQHLNALKYIEMLFYMKNLERKKLQFGAKIACPNNSERLKA--FIASLP 229

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP 
Sbjct: 230 FKLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLMAPT 287

Query: 331 GILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            ILA+Q Y    +F+  Y +     VE++ G      R+K    +     H+IIGT AL 
Sbjct: 288 SILAKQLYNEALKFLPPYFE-----VELLLG----GSRKKRSNHLFETITHVIIGTQALL 338

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGD 442
            D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L     
Sbjct: 339 FDQRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAF 398

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S
Sbjct: 399 VKTTMIREIPYP-KEIETLVLHKRDFKIVMEKINEEIAKNHQVIVVYPLVNESEKIPYLS 457

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E  +   + F  ++    G+  D +KE V++ F+  +  +L+ATT+IEVGI +   S+
Sbjct: 458 LSEGASFWQKRF-KNVYTTSGQ--DKNKEEVIEEFRE-SGSILLATTLIEVGISLPRLSV 513

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF IAE
Sbjct: 514 MVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFKIAE 569

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DL+ RK G++L G +QSG
Sbjct: 570 LDLQYRKSGDLLQGGEQSG 588


>gi|317499346|ref|ZP_07957616.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893381|gb|EFV15593.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 948

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 111/327 (33%), Positives = 181/327 (55%), Gaps = 8/327 (2%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q +AI D  +DM  K  M R++ GDVG GKT VA+ A   AV+ G Q   + P
Sbjct: 625 PYDETQDQLNAIDDTKRDMESKKIMDRLICGDVGYGKTEVAIRAAFKAVDNGKQVAYLVP 684

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHY    +   +  I V +++       +++ +E + +G   ++IGTH L    
Sbjct: 685 TTILAQQHYNTFAQRFHDYPITVRMMSRFCTAKEQKETIEGLKNGTVDVVIGTHRLLSKD 744

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +QY  L L+++DE+ RFGV  + K+        VL ++ATPIPRTL ++ +G  D+S + 
Sbjct: 745 MQYKNLGLLVIDEEQRFGVTHKEKIKTMKKDVDVLSLSATPIPRTLHMSLIGIRDMSVLE 804

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           E P  R+ I+T ++  N  + V E +   ++ G + Y++  ++     +N   V      
Sbjct: 805 EPPHDRRAIQTYVMEYNE-ELVKEAVYREMTRGGQVYYVYNRV-----NNIAEVTAELQR 858

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L     + +A  HG+M + + E +M  F N    +L++TT+IE G+D+ + + +II +A 
Sbjct: 859 LLP--DAKVAFAHGQMKERELEEIMMGFMNHEIDVLVSTTIIETGLDIPNVNTMIIHDAN 916

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY 596
             GL+QL+QLRGRVGR    +   L+Y
Sbjct: 917 QLGLSQLYQLRGRVGRSNRNAFAFLMY 943


>gi|296272208|ref|YP_003654839.1| transcription-repair coupling factor [Arcobacter nitrofigilis DSM
           7299]
 gi|296096383|gb|ADG92333.1| transcription-repair coupling factor [Arcobacter nitrofigilis DSM
           7299]
          Length = 989

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 125/398 (31%), Positives = 211/398 (53%), Gaps = 23/398 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           GI IN + KI +    +  F  TK Q+ +I ++  D+S    M R+L GDVG GKT VA+
Sbjct: 459 GIKINCDKKILKDFSTSAGFDYTKDQKRSINELFDDLSSGKVMDRLLSGDVGFGKTEVAM 518

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A+ A +  G QA+ + P  +LA QH+  +KK      I +  + G      +    + +
Sbjct: 519 NALLAVILDGHQALFVCPTTLLASQHFHSMKKRFDEYGIRMAQLDGKTTAKEKTYVKKAL 578

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G   +++GTH+L    I+   L LVI+DE+H+FGV+Q+ KL +     H+  M+ATPI
Sbjct: 579 ESGDIDLVVGTHSLLD--IKTKDLALVIIDEEHKFGVKQKEKLKELREDVHIFSMSATPI 636

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489
           PRTL L       +S +   P  R  ++T +       I E++ R K     G + +++ 
Sbjct: 637 PRTLNLALSKLKGMSSLLTPPTERLGVRTYVKEFEEKLIKEIVLREK---RRGGQLFYVH 693

Query: 490 PQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             I   E K+++ + ++             I +IH +++ +  E +++ F +G   +L+A
Sbjct: 694 NNIASMEAKKADIQEILPNIK---------IEMIHSKITQVKAEKLIEDFNDGKFDILLA 744

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSY 605
           T+++E G+ + +A+ +II+ A+ FG+A LHQLRGRVGRG +   C  +      ++ ++ 
Sbjct: 745 TSIVESGLHLPNANSMIIDGADRFGIADLHQLRGRVGRGHKEGFCYFIVEDKKKITSDAI 804

Query: 606 TRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
            RL  L++      G  +A +DL+ R  G I+G  QSG
Sbjct: 805 KRLLALESNSYLGSGTALAHQDLEIRGGGNIIGEAQSG 842


>gi|86151660|ref|ZP_01069874.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124010|ref|YP_004066014.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841289|gb|EAQ58537.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315017732|gb|ADT65825.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 607

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 142/379 (37%), Positives = 213/379 (56%), Gaps = 22/379 (5%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           ++++PFS TK Q +A+KDI +D+  K+   R++ GDVG GKTLV L   AA +    QA+
Sbjct: 219 IKDLPFSLTKDQLNALKDIEKDLHSKDAKRRVIMGDVGCGKTLVLL--GAALMVYPKQAI 276

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA Q YE  KK+  +   I+ I  G      + K LE+    +A++IIGTHAL
Sbjct: 277 LMAPTSILAYQLYEEAKKFLPDFMNILFIKGGK-----KEKDLEQNIQ-KANLIIGTHAL 330

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               ++ +  +LV++DEQHRFG  QR K   L ++   PH +  +ATPIPRTL +     
Sbjct: 331 IH--LESHNAVLVMIDEQHRFGSAQREKIHSLNKQEFTPHFIQFSATPIPRTLSMIQSEL 388

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           ++ S I + P   K I T  I      ++ E++K  + +  +   I P +    +  + S
Sbjct: 389 LNFSFIKQMPF-EKDITTYCIQNEGFSKLSEKIKEEIVKNHQIIIIYPLVSASDKIPYLS 447

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +       H+   + + HG+  D  K+ +++ F++    +L++TTV+EVGI +   S+
Sbjct: 448 LEQAKEYWQSHY-EKVFVTHGK--DKQKDEILERFRD-EGNILLSTTVVEVGISLPRLSM 503

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I  AE  GLA LHQLRGRVGR    S+C L  +  L K   +RL    +T DGF IAE
Sbjct: 504 IVIVGAERLGLATLHQLRGRVGRVGLKSTCYL--YTKL-KEIPSRLKEFASTLDGFKIAE 560

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DLK R  G++L G  Q G
Sbjct: 561 LDLKNRLSGDLLDGFMQHG 579


>gi|158312659|ref|YP_001505167.1| transcription-repair coupling factor [Frankia sp. EAN1pec]
 gi|158108064|gb|ABW10261.1| transcription-repair coupling factor [Frankia sp. EAN1pec]
          Length = 1188

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 215/381 (56%), Gaps = 23/381 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF  T  Q +AI ++  DM +   M R++ GDVG GKT +A+ A   AV  G Q  ++ P
Sbjct: 633  PFRETPDQLAAIDEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVTDGRQVAVLVP 692

Query: 330  IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              +L QQH++ F ++Y      +  +   N P + +R  L+ +A+G   ++IGTH L   
Sbjct: 693  TTLLVQQHFQTFAERYAPFPVTVKAVSRFNAP-SEQRAVLDGLANGTVDVVIGTHRLLSS 751

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
              ++  L LVIVDE+ RFGV+ +  L +  TA  VL M+ATPIPRTL ++  G  ++S I
Sbjct: 752  ETKFSDLGLVIVDEEQRFGVEHKEHLKKMRTAVDVLTMSATPIPRTLEMSITGIRELSTI 811

Query: 449  TEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
               P  R P+ T + P    ++   I R   +L EG + ++I  ++E  ++  +  R +V
Sbjct: 812  DTPPEERHPVLTSVAPYEPRQVTAAIRR--ELLREG-QVFFIHNRVESIDRAAAALRELV 868

Query: 505  ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                       + IA  HG+M++   E VM SF      +L+ TT++E G+D+ +A+ +I
Sbjct: 869  PE---------ARIATAHGQMNEDALEQVMVSFWEKKFDVLVCTTIVESGLDISNANTLI 919

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619
            +E A++FGL+QLHQLRGRVGRG E +    LY    PLS+ ++ RL+ +    D   G  
Sbjct: 920  VERADNFGLSQLHQLRGRVGRGRERAYAYFLYPADRPLSETAHDRLATIAQHNDLGAGMA 979

Query: 620  IAEEDLKQRKEGEILGIKQSG 640
            +A +DL+ R  G +LG +QSG
Sbjct: 980  VAMKDLEIRGAGNLLGGEQSG 1000


>gi|315585955|gb|ADU40336.1| transcription-repair coupling factor [Helicobacter pylori 35A]
          Length = 999

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 135/401 (33%), Positives = 216/401 (53%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSTLVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  G   +++GTHA+     
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVELGLIDVLVGTHAIL--GA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKSISSLKI 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIHR---ELRRNGQIFYIHNHIASISKVKTKLEDLIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E  M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 L---------KIAILHSQINASESEETMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|217034285|ref|ZP_03439702.1| hypothetical protein HP9810_885g16 [Helicobacter pylori 98-10]
 gi|216943257|gb|EEC22722.1| hypothetical protein HP9810_885g16 [Helicobacter pylori 98-10]
          Length = 621

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 190/619 (30%), Positives = 294/619 (47%), Gaps = 72/619 (11%)

Query: 44  LLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           LL Y P  + D    +H+   +S + E  I+    Y      F   KR  YK L      
Sbjct: 20  LLVYTPKGYKDLNLLKHFELGLSGVLEVDILDKRNYAKVLKIFAYSKRF-YKNLE----- 73

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
               L F+  +    N F  G  + + GK+++             F+ +  +N P I   
Sbjct: 74  ----LVFFNYSAFHHNQFKTGESLFIYGKLEQSS-----------FNQAYIINTPKILTE 118

Query: 160 YSLPTGLSVDLFKKI-----IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           +    G    +FKK+     I E L +L  L E ++K+ +++     + E F     P  
Sbjct: 119 F----GKISLIFKKVKNHKKIQENLQKLISL-ENLKKEGIKENIAHLLLEIF--FPTPHF 171

Query: 215 AKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            KDFE    ++S     L Y E+L     L   + QF  +I  P N E   A   + ++P
Sbjct: 172 VKDFETHKNFSSQHLNALKYIEMLFYMKNLERKKLQFNAKIACPNNSERLKA--FIASLP 229

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP 
Sbjct: 230 FKLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLMAPT 287

Query: 331 GILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            ILA+Q Y    +F+  Y +     VE++ G   +       E I H    ++IGT AL 
Sbjct: 288 SILAKQLYNEALKFLPPYFE-----VELLLGGSYKKRSNHLFETITH----VVIGTQALL 338

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGD 442
            D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L     
Sbjct: 339 FDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAF 398

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S
Sbjct: 399 VKTTMIREIPY-LKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLS 457

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E  +   + F   +    G+  D +KE V++ F+  +  +L+ATT+IEVGI +   S+
Sbjct: 458 LSEGASFWQKRF-KKVYTTSGQ--DKNKEEVIEEFRE-SGSILLATTLIEVGISLPRLSV 513

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF IAE
Sbjct: 514 MVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFKIAE 569

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DL+ RK G++L G +QSG
Sbjct: 570 LDLEYRKSGDLLQGGEQSG 588


>gi|307721719|ref|YP_003892859.1| ATP-dependent DNA helicase RecG [Sulfurimonas autotrophica DSM
           16294]
 gi|306979812|gb|ADN09847.1| ATP-dependent DNA helicase RecG [Sulfurimonas autotrophica DSM
           16294]
          Length = 597

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 162/489 (33%), Positives = 252/489 (51%), Gaps = 55/489 (11%)

Query: 164 TGLSVDLFKKIIVEALSRLPVLPEWIEKDL---LQKKSFPSIAEAFNIIHNPRKAKDFEW 220
           T L  D+ ++++   + R  +L   +++D+   L K  FPS  E   +     K     W
Sbjct: 128 TALRSDVMQRLVKSLVKRENLLHVKLKEDVVAELLKLHFPS-DEFLQLKEMSEKTL---W 183

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
                E  +Y ++LAG+      R+ F       ++ +    +   +++PF+ T  Q +A
Sbjct: 184 ALKYAELFSYMQMLAGK------RRYFN-----ALSSKAGDYKAWSKSLPFTLTNEQINA 232

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I+DI QDM +     R++ GDVGSGKT+V  I  AA +     +V+MAP  ILA Q +E 
Sbjct: 233 IEDIRQDMQKDVAAKRMVVGDVGSGKTMV--ILAAAYMNMPNHSVLMAPTTILANQLFEE 290

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL---IL 397
            +KY    Q+ V ++T            ++I   +   IIGTHAL      Y KL    L
Sbjct: 291 AQKYL--PQLKVLLVTNKT---------KKIDLCEYDFIIGTHALL-----YRKLPQASL 334

Query: 398 VIVDEQHRFGVQQRLKLTQKATA-----PHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           ++VDEQHRFG  QR  + +K  A     PH +  +ATPIPRT  +     ID+S IT  P
Sbjct: 335 IMVDEQHRFGTAQR-NMLEKMVAVQELKPHFIQFSATPIPRTQAMIESAHIDVSLITTTP 393

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              K I + +I  +   +++  +K  +++  +   + P +E+ +   ++S+ E  +   +
Sbjct: 394 FA-KDIDSKVIHKSDFKDLLLHVKAEIAKNNQVLLVYPLVEQSEVLEYQSIEEARSYWEK 452

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +F  ++ + HG+  D +KE V+  F+     +LIATTV+EVGI +   S ++I  AE  G
Sbjct: 453 NF-ENVYVTHGK--DKEKEQVLLDFRE-KGDILIATTVVEVGISLPRLSTVVIVGAERLG 508

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           L+ LHQLRGRV R      C L      +KN+  RL    +T+ GF IA  DLK RK G+
Sbjct: 509 LSTLHQLRGRVSRTGLKGYCFLY----TNKNASERLDEFIHTKSGFDIANLDLKFRKSGD 564

Query: 633 IL-GIKQSG 640
           +L GI QSG
Sbjct: 565 LLKGISQSG 573


>gi|88607738|ref|YP_504735.1| transcription-repair coupling factor [Anaplasma phagocytophilum HZ]
 gi|88598801|gb|ABD44271.1| transcription-repair coupling factor [Anaplasma phagocytophilum HZ]
          Length = 1139

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 141/408 (34%), Positives = 222/408 (54%), Gaps = 24/408 (5%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQA 324
           +  P+  T+ Q  AI D+  D+++   M R++ GDVG GKT +AL A    V  +   Q 
Sbjct: 579 KECPYVETEDQLKAIADVENDLARGKVMDRLICGDVGFGKTEIALRAAFLVVNEDITCQV 638

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            ++ P  +L +QH+   K+  +N ++ ++ ++    +  +++  E +  G  +IIIGT A
Sbjct: 639 AVLVPTTLLCRQHFLAFKERFKNYKVNIQQLSKATAKK-KQQIREGLEEGSINIIIGTSA 697

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI- 443
           L  DSIQ+  L L+I+DE+  FGVQQ+ KL       HVL ++ATPIPRTL + SL +I 
Sbjct: 698 LLSDSIQFLDLRLLIIDEEQHFGVQQKEKLRLLKHDVHVLSLSATPIPRTLHM-SLSNIK 756

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFR 501
           D+S +   P GR    TV I I   DE   +  ++  ++ G + ++ CP I     ++  
Sbjct: 757 DLSILRTPPIGR---TTVEISITHFDEKTIKTAILNEVNRGGRVFFTCPLI-----ADIE 808

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            V+ R   L       IA+ HG  + +  + +M+ F +G   LL+ T++IE GID+  A+
Sbjct: 809 PVLTRLQKLVPEV--KIAVAHGGTAPLALDKIMNDFFDGKFSLLLTTSIIESGIDIPFAN 866

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS--YTRLSVLKNTE---D 616
            III NA+ FGLAQL+QL+GRVGR        L+     + NS    RL  LK+      
Sbjct: 867 TIIIYNADMFGLAQLYQLKGRVGRSTTQGYAYLILSNKATSNSPGMKRLEALKSLNSVGS 926

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           GF ++ +D+  R  G ++G +QSG  K +    EL+  +LE A +  K
Sbjct: 927 GFALSLQDMDMRGFGNLVGEEQSGNIKEV--GIELYHRMLEEALETCK 972


>gi|317178226|dbj|BAJ56015.1| DNA recombinase [Helicobacter pylori F16]
          Length = 621

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 189/619 (30%), Positives = 293/619 (47%), Gaps = 72/619 (11%)

Query: 44  LLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           LL Y P  + D    +H+   +S + E  I+    Y      F   KR  YK L      
Sbjct: 20  LLVYMPKGYKDLNLLKHFELGLSGVLEVDILDKRNYAKVLKIFAYSKRF-YKNLE----- 73

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
               L F+  +    N F  G  + + GK+++             F+ +  +N P I   
Sbjct: 74  ----LVFFNYSAFHHNQFKTGESLFIYGKLEQSS-----------FNQAYIINTPKILTE 118

Query: 160 YSLPTGLSVDLFKKI-----IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           +    G    +FKK+     I E L +L  L E ++K+ +++     + E F     P  
Sbjct: 119 F----GKISLIFKKVKNHKKIQENLQKLISL-ENLKKEGIKENIAHLLLEIF--FPTPHF 171

Query: 215 AKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            KDFE    + S     L Y E+L     L   + QF  +I  P N E    +  + ++P
Sbjct: 172 VKDFETHKNFPSQYLNALKYIEMLFYMKNLERKKLQFSAKIACPNNSER--LKAFITSLP 229

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP 
Sbjct: 230 FKLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLMAPT 287

Query: 331 GILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            ILA+Q Y    +F+  Y +     VE++ G   +       E I H    ++IGT AL 
Sbjct: 288 SILAKQLYNEALKFLPPYFE-----VELLLGGSYKKRSNHLFETITH----VVIGTQALL 338

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGD 442
            D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L     
Sbjct: 339 FDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAF 398

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S
Sbjct: 399 VKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLS 457

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E  +   + F   +    G+  D +KE V++ F+  +  +L+ATT+IEVGI +   S+
Sbjct: 458 LSEGASFWQKRF-KKVYTTSGQ--DKNKEEVIEEFRE-SGSILLATTLIEVGISLPRLSV 513

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF IAE
Sbjct: 514 MVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFKIAE 569

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DL+ RK G++L G +QSG
Sbjct: 570 LDLEYRKSGDLLQGGEQSG 588


>gi|121612291|ref|YP_001000171.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005129|ref|ZP_02270887.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87250493|gb|EAQ73451.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 607

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 142/379 (37%), Positives = 212/379 (55%), Gaps = 22/379 (5%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+++PFS TK Q +A+KDI +D+  K    R++ GDVG GKTLV L   AA +    QA+
Sbjct: 219 LKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLL--GAALMVYPKQAI 276

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA Q YE  KK+  +   I+ I  G      + K LE+    +A+++IGTHAL
Sbjct: 277 LMAPTSILAYQLYEEAKKFLPDFMNILFIKGGK-----KEKDLEQNIQ-KANLVIGTHAL 330

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               ++ +  +LV++DEQHRFG  QR K   L ++   PH +  +ATPIPRTL +     
Sbjct: 331 IH--LESHNAVLVMIDEQHRFGSAQREKIHSLNKQEFTPHFIQFSATPIPRTLSMIQSEL 388

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           ++ S I + P   K I T  I      ++ E++K  + +  +   I P +    +  + S
Sbjct: 389 LNFSFIKQMPF-EKDITTYCIQNEGFSKLSEKIKEEIVKNHQIIIIYPLVSASDKIPYLS 447

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + +       H+   + + HG+  D  K+ +++ F++    +L++TTV+EVGI +   S+
Sbjct: 448 LEQAKEYWQSHY-EKVFVTHGK--DKQKDEILERFRD-EGNILLSTTVVEVGISLPRLSM 503

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I  AE  GLA LHQLRGRVGR    S+C L  +  L K   +RL    +T DGF IAE
Sbjct: 504 IVIVGAERLGLATLHQLRGRVGRVGLKSTCYL--YTKL-KEIPSRLKEFASTLDGFKIAE 560

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DLK R  G++L G  Q G
Sbjct: 561 LDLKNRLSGDLLDGFMQHG 579


>gi|260753800|ref|YP_003226693.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
            mobilis NCIMB 11163]
 gi|258553163|gb|ACV76109.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
            mobilis NCIMB 11163]
          Length = 1167

 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 128/396 (32%), Positives = 215/396 (54%), Gaps = 18/396 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ QE AI D+++D+++   M R++ GDVG GKT VAL A      +G Q  ++ P
Sbjct: 616  PYQETEDQEHAISDVIEDLAKGKPMDRLICGDVGFGKTEVALRAAFVTAMSGLQVALVCP 675

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QHY    +  +   + +  ++  +P    +   E +A G   I+IGTHA+   +
Sbjct: 676  TTLLARQHYSNFLERFEGFPLQIGRLSRLVPAKEAKACREALADGTIDIVIGTHAILSKT 735

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I + +L LVIVDE+  FGV  + +L       H L +TATPIPRTL +   G  ++S I 
Sbjct: 736  IDFNRLGLVIVDEEQHFGVVHKERLKALKNDVHQLTLTATPIPRTLQMAMSGLRELSVIQ 795

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R  +++ ++P + +  + E L      G +++ + P+I +  +      +E+F  
Sbjct: 796  TPPVDRLAVRSYVMPWDPV-AIREALLREHYRGGQSFIVVPRISDLAD------LEKF-- 846

Query: 510  LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L E        I HG+M+  + E+ M +F +    +L++TT++E G+D+  A+ +I+  A
Sbjct: 847  LSEQVPEIRFVIAHGQMAATEVENRMSAFYDKKFDVLLSTTIVESGLDIPSANTMIVYRA 906

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLIAEE 623
            + FGL+QL+Q+RGRVGR +  +   L    +  +S+ +  RL +L   +    GF +A  
Sbjct: 907  DRFGLSQLYQIRGRVGRSKTRAYAYLTTPVNHSISETAEKRLHILSTLDSLGAGFQLASH 966

Query: 624  DLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLL 656
            DL  R  G +LG +QSG  K   F + Q  L D++L
Sbjct: 967  DLDIRGAGNLLGDEQSGHIKEVGFELYQSMLEDAIL 1002


>gi|330465805|ref|YP_004403548.1| transcription-repair coupling factor [Verrucosispora maris AB-18-032]
 gi|328808776|gb|AEB42948.1| transcription-repair coupling factor [Verrucosispora maris AB-18-032]
          Length = 1232

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 150/431 (34%), Positives = 233/431 (54%), Gaps = 23/431 (5%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W  S AR R A  E+ A  I L   RK  K   G     +    +++    P+  T  Q
Sbjct: 624  DWQKSKARARKAVKEIAAQLIQLYAARKASK---GHNFGPDTPWQRELEDAFPWQETPDQ 680

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +AI ++ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 681  LAAIDEVKRDMEQSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 740

Query: 338  YE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            Y  F ++ +Q    I ++     P+    + LE +A+G A I+IGTH L   S ++  L 
Sbjct: 741  YNTFAERMSQFPVTIRQLSRFQTPK-EAEQTLEMVANGSADIVIGTHRLLAASTRFKSLG 799

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            LVIVDE+ RFGV+ +  L     A  VL M+ATPIPRTL +   G  ++S I   P  R 
Sbjct: 800  LVIVDEEQRFGVEHKEHLKSMRAAVDVLSMSATPIPRTLEMAITGIREMSTIATPPEERH 859

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            P+ T +   +         + +L +G + +++  ++E  E+     R +V          
Sbjct: 860  PVLTAVGAYDDRQVAAAIHRELLRDG-QVFYLHNRVESIERTARKLRELVPE-------- 910

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + +A+ HG+M +   E VM  F      +L+ TT++E GID+ +A+ +I+E A+  GLA
Sbjct: 911  -ARVAVAHGQMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLA 969

Query: 575  QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRK 629
            QLHQ+RGRVGRG E +    LY P  PL+++++ RL+ + ++TE   G  +A +DL+ R 
Sbjct: 970  QLHQIRGRVGRGRERAYAYFLYPPDKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRG 1029

Query: 630  EGEILGIKQSG 640
             G +LG +QSG
Sbjct: 1030 AGNLLGGEQSG 1040


>gi|163868353|ref|YP_001609562.1| transcription repair coupling factor [Bartonella tribocorum CIP
            105476]
 gi|161018009|emb|CAK01567.1| transcription repair coupling factor [Bartonella tribocorum CIP
            105476]
          Length = 1166

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 131/403 (32%), Positives = 222/403 (55%), Gaps = 28/403 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q +AI  +L D++    M R++ GDVG GKT VA+ +   A   G Q  ++ P
Sbjct: 616  PYEETEDQINAIDAVLDDLASGKPMDRLICGDVGFGKTEVAIRSAFVAALNGYQVAVVVP 675

Query: 330  IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALER----IAHGQAHIIIGTHA 384
              +L++QHY+ FI ++       + +  G+  +  + K + +    I+ G   I+IGTHA
Sbjct: 676  TTLLSRQHYKTFISRFQG-----LPVKIGHASRLVKTKEIAQVKKGISDGTIDIVIGTHA 730

Query: 385  LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
            L   +I + +L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  +
Sbjct: 731  LLSGAINFLRLGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRTLGLALSGVRE 790

Query: 445  ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            +S IT  P  R  ++T I P + +  + E L      G +++++CP+I +       + V
Sbjct: 791  LSLITTPPVDRMAVRTFISPFDAL-VIRETLLREYYRGGQSFYVCPRISD------LAFV 843

Query: 505  ERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            E +  L  H       I HG+M     + +M++F +G   +L++TT+IE G+D+  A+ +
Sbjct: 844  EEY--LKTHVPELKFVIAHGQMPAGQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANTL 901

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618
            I+  AE FGL+ L+QLRGRVGR ++ +  +  +     L+  +  RL VL++ +    GF
Sbjct: 902  IVHRAEMFGLSALYQLRGRVGRSKQRAYALFTFPSGKVLTPAADRRLKVLQSLDTLGAGF 961

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEI 658
             +A  D+  R  G  LG +QSG  K   F + Q  L +++ E+
Sbjct: 962  QLASHDMDIRGSGNFLGEEQSGHIKEVGFELYQKMLEEAVAEL 1004


>gi|152991203|ref|YP_001356925.1| transcription-repair coupling factor [Nitratiruptor sp. SB155-2]
 gi|151423064|dbj|BAF70568.1| transcription-repair coupling factor [Nitratiruptor sp. SB155-2]
          Length = 976

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 132/380 (34%), Positives = 208/380 (54%), Gaps = 25/380 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T+ Q+ AI  ILQ +S    M  +L GDVG GKT VA+ A+ A V+ G QA ++ P 
Sbjct: 463 FEYTEDQKRAIDTILQRLSSGKVMDMLLSGDVGFGKTEVAMNAIYAIVKNGYQAAVVVPT 522

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L+ QHYE + K  +   I V  I   +    +++ L+ +  G   +++GTHALF    
Sbjct: 523 TLLSAQHYESLVKRLEPFNISVTKIDRFVTAKEKKERLQALKEGTFDVVVGTHALF--GA 580

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV++DE+H+FGV+Q+ KL   +   H+L M+ATPIPR+L +      D+S+I  
Sbjct: 581 EFKNLGLVVIDEEHKFGVKQKEKLKAFSKDVHLLSMSATPIPRSLNMALSQLKDLSEIRT 640

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWI---CPQIEEKKESNFRSVVE 505
            P  RKP++T +       + EVI R    L  G + ++I      IEEKKE + + ++ 
Sbjct: 641 PPQNRKPVRTYVKEYQDKLVKEVILR---ELRRGGQVFYIYNSIAGIEEKKE-DLQQLLP 696

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                       I ++H +++    E  +  F  G   +L++T+++E GI + + + II+
Sbjct: 697 ---------GKKILVLHSKIAAATTEKELLRFAQGEYDILLSTSIVESGIHMPNVNTIIV 747

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLI 620
           E A+ FG+A LHQLRGRVGRG +   C  L      L++ +  RL  L++      G  +
Sbjct: 748 EGADRFGIADLHQLRGRVGRGGKEGFCYYLVEDKQKLTEEAKKRLIALESNSYLGSGAAL 807

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  G I+G +QSG
Sbjct: 808 AYYDLEIRGGGNIIGAQQSG 827


>gi|299470460|emb|CBN78452.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 815

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 229/439 (52%), Gaps = 35/439 (7%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKTLVALI 312
           P   +G    +  +     PTK Q   + +I  DM  +K  M R+L GDVG GKT VAL 
Sbjct: 98  PCKPDGPEMDEFCKGFDHQPTKDQLRCLTEIENDMIWRKIPMDRLLCGDVGFGKTEVALR 157

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           AM   V    Q  ++AP  ILA QHY  + K       +  +  GN      R   E I 
Sbjct: 158 AMFRMVRHNKQVALLAPTTILAAQHYRTLLKRMPADVNVALLRGGN--SMGSRGIKEAIR 215

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +    +++GTH+L    +++  L L+++DE+ +FGV Q+ KL    T   VL +TATPIP
Sbjct: 216 NETVRVVVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLTTGVDVLTLTATPIP 275

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQ 491
           RTL ++  G  D+S I   PA R+ + T I  +   DE+++R L   +S G + +++ P+
Sbjct: 276 RTLHMSLTGIRDLSTIFSPPANRQNVTTYI--MKGTDEIVQRALTREMSRGGQVFYVVPR 333

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           I + +++  +  + R         + +A+ H ++ ++  E V+  F  G   +L+AT++I
Sbjct: 334 INQIEDAWLQ--ISRCVP-----NARVAVGHSKIKNL--EDVVLQFTLGRGDILLATSII 384

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLS 609
           E GID+ + + I+++++  FGL+QL+Q+RGRVGR +  +   LLY P   LS  +  RL 
Sbjct: 385 ENGIDMPNVNSIVVQDSHMFGLSQLYQMRGRVGRSDVAAYTYLLYPPGHQLSNEAKRRLK 444

Query: 610 VLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            ++       GF +A  DL+ R  G I G  QSG  K +    EL+ ++LE A       
Sbjct: 445 AMRELSHLGSGFELANRDLEIRGAGNIFGTDQSGDLKDI--GYELYMNMLEKA------- 495

Query: 667 LTQDPDLTSVRGQSIRILL 685
                 + SVRG  I+ +L
Sbjct: 496 ------IVSVRGTDIQPVL 508


>gi|323344976|ref|ZP_08085200.1| transcription-repair coupling factor [Prevotella oralis ATCC 33269]
 gi|323094246|gb|EFZ36823.1| transcription-repair coupling factor [Prevotella oralis ATCC 33269]
          Length = 1177

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 126/401 (31%), Positives = 210/401 (52%), Gaps = 17/401 (4%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           + E G   + +  +  ++  +  +  T  Q  A +++  DM     M R++ GDVG GKT
Sbjct: 592 RHEKGFAFSADSFMQHELEASFLYEDTPDQLKATQEVKADMESLRPMDRLVCGDVGFGKT 651

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A   G Q  ++ P  +LA QHY+  +   ++  + V+ ++        ++ 
Sbjct: 652 EVAVRAAFKAACDGKQVAVLVPTTVLAFQHYQTFRNRLKDFPVRVDYLSRARSVKQTKQI 711

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  +  G+  I++GTH L   +++++ L L+I+DE+ +FGV  + +L +  +    L M+
Sbjct: 712 LADLETGKIDILVGTHKLIGKTVKWHDLGLLIIDEEQKFGVSTKERLRKLQSNVDTLTMS 771

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAY 486
           ATPIPRTL  + +G  D+S +   P  R PI T +       EVI + +   +S   + +
Sbjct: 772 ATPIPRTLQFSLMGARDMSIMRTPPPNRYPIHTELSTYGH--EVIADAINFEMSRNGQVF 829

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++  +I    E  +         +HEH     +AI HG+MS  + E ++  F N    +L
Sbjct: 830 FVNDRISGLPEIAYL--------IHEHVPDCRVAIAHGQMSPDELERIIMGFINYDYDVL 881

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKN 603
           ++TT++E GID+ +A+ III +A  FGL+ LHQ+RGRVGR    + C LL  P   L+  
Sbjct: 882 LSTTIVENGIDIPNANTIIINDAHRFGLSDLHQMRGRVGRSNRKAFCYLLAPPKSVLTPE 941

Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           +  RL  L+   D   GF +A +DL  R  G +LG +QSG 
Sbjct: 942 ARRRLEALETFSDLGSGFNLAMQDLDIRGAGNLLGAEQSGF 982


>gi|58617486|ref|YP_196685.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
           Gardel]
 gi|58417098|emb|CAI28211.1| Transcription-repair coupling factor [Ehrlichia ruminantium str.
           Gardel]
          Length = 1123

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 133/411 (32%), Positives = 215/411 (52%), Gaps = 17/411 (4%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G P  +   I +       ++ T  Q  AI+DI  D+S    M R++ GD G GKT VAL
Sbjct: 568 GTPF-LPNNIYKNFCDEFAYTETTDQLQAIQDIENDLSSGKIMNRLICGDAGFGKTEVAL 626

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            A         Q  ++ P  +L +QH+  F +++     I ++ ++  + +   +K  E 
Sbjct: 627 RAAFLVAIKNYQVAVIVPTTLLCKQHFTVFTERFKNFPNIKIQQLSKIVNKHEIKKIKEN 686

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           I++G  HIIIGTHA+    + ++ L LVI+DE+ +FGV+Q+  L +     HVL ++ATP
Sbjct: 687 ISYGHTHIIIGTHAILSQDVNFFNLSLVIIDEEQQFGVKQKELLKKIKANVHVLSLSATP 746

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE-GKKAYWIC 489
           IPRTL ++  G  + S I   P  R P+ T    I+  D  I+   +   E G + +++C
Sbjct: 747 IPRTLHMSLCGIKNFSLIKTPPKNRLPVITY--TIHYTDNTIKNAIIHEYERGGRTFYVC 804

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           PQI   K       + R           I I HG++   + E+VM+ F +G   +L+ T+
Sbjct: 805 PQINNIKNI--NDNLIRLLP-----DIKIGIAHGQLPSHELENVMNDFLDGKFTVLLTTS 857

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +IE G+D+  A+ III NA+ FGLAQL+QL+GRVGR         +    ++  S  RL 
Sbjct: 858 IIECGLDIPHANTIIIHNADMFGLAQLYQLKGRVGRSNIKGYAYFILSDNINNISERRLE 917

Query: 610 VLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           ++++ +    GF ++  D+  R  G ++G +QSG  K +    EL+  +LE
Sbjct: 918 IIRSIDSINSGFALSLHDMDIRGFGNLIGEEQSGNIKDI--GIELYQQMLE 966


>gi|308062834|gb|ADO04722.1| transcription-repair coupling factor [Helicobacter pylori Cuz20]
          Length = 999

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 135/401 (33%), Positives = 216/401 (53%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  G   +++GTHA+     
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVELGLIDVLVGTHAIL--GA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKI 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIHR---ELRRNGQIFYIHNHIASISKVKTKLEELIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E  M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 L---------KIAILHSQINANESEETMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|305681933|ref|ZP_07404737.1| transcription-repair coupling factor [Corynebacterium matruchotii
            ATCC 14266]
 gi|305658406|gb|EFM47909.1| transcription-repair coupling factor [Corynebacterium matruchotii
            ATCC 14266]
          Length = 1238

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 206/385 (53%), Gaps = 17/385 (4%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q++  N PF  T+ Q +AI  + QDM Q   M R++ GDVG GKT VA+ A   AV+ G 
Sbjct: 642  QELEDNFPFVETEDQMAAIAAVKQDMEQPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGK 701

Query: 323  QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            Q  ++ P  +LAQQH     +      + ++ ++     +  ++ L  +  G   I+IGT
Sbjct: 702  QVAVLVPTTLLAQQHLATFAERMAGFPVTIKGLSRFTSASDAKEILSGLRDGSVDIVIGT 761

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L Q  +Q+ +L LV+VDE+ RFGV+ +  +    +   VL M+ATPIPRTL ++  G 
Sbjct: 762  HRLLQTGVQWKQLGLVVVDEEQRFGVEHKEHIKAMRSHVDVLTMSATPIPRTLEMSMAGI 821

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNF 500
             ++S I   P  R PI T  +      ++   ++  L    + +++  ++   EKK    
Sbjct: 822  REMSTILTPPEDRHPILT-YVGAQEEKQIAAAIRRELLRDGQVFFVHNKVSDIEKKAREL 880

Query: 501  RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            R++V           + I + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A
Sbjct: 881  RNLVPE---------ARIVVAHGQMSEEVLERTVQGFWDREYDVLVCTTIVETGLDIANA 931

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED-- 616
            + +I+ENA H GL+QLHQLRGRVGR         LY     L++ SY RL+ +    D  
Sbjct: 932  NTLIVENAHHMGLSQLHQLRGRVGRSRSRGYAYFLYPKGTTLTETSYDRLATIAQNNDLG 991

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSG 640
             G  +A +DL+ R  G +LG +QSG
Sbjct: 992  AGMAVAMKDLEMRGAGNVLGAQQSG 1016


>gi|226365233|ref|YP_002783016.1| transcription-repair coupling factor [Rhodococcus opacus B4]
 gi|226243723|dbj|BAH54071.1| transcription-repair coupling factor [Rhodococcus opacus B4]
          Length = 1215

 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 122/375 (32%), Positives = 197/375 (52%), Gaps = 13/375 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 651  FTETHDQLTVISEVKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 710

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LAQQH +   +      + V  ++        ++ +  +A G+  +++GTH L Q ++
Sbjct: 711  TLLAQQHLQTFTERMAAFPVKVRGLSRFTDAGESKEIVAGMADGEIDVVVGTHRLLQTAV 770

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 771  RWKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILT 830

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R PI T +             + +L +G+  Y         + S+     +R   L
Sbjct: 831  PPEERHPILTYVGAYADKQVAAAIRRELLRDGQVFYV------HNRVSSIDKAAQRIREL 884

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + + + HG+M++   E  +  F      +L+ TT+IE G+D+ +A+ +I+E A+ 
Sbjct: 885  VPE--ARVVVAHGQMNEDTLERTVQGFWERDYDVLVCTTIIETGLDISNANTLIVERADS 942

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
             GL+QLHQLRGRVGR  E      LY P  PL++ +Y RL+ +    D   G  +A +DL
Sbjct: 943  LGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDL 1002

Query: 626  KQRKEGEILGIKQSG 640
            + R  G +LG +QSG
Sbjct: 1003 EIRGAGNVLGAEQSG 1017


>gi|260885484|ref|ZP_05735117.2| transcription-repair coupling factor [Prevotella tannerae ATCC
           51259]
 gi|260852468|gb|EEX72337.1| transcription-repair coupling factor [Prevotella tannerae ATCC
           51259]
          Length = 1143

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 127/409 (31%), Positives = 215/409 (52%), Gaps = 17/409 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q K+E G   + +  + Q++  +  +  T  Q    +++  DM     M R++ 
Sbjct: 551 LIKLYSQRKEEKGYAFSADSFLQQELEASFTYEDTPDQLKVTQEVKADMESLRPMDRLVC 610

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT +A+ A   A     Q  ++ P  +LA QHY    +  +   + V  ++   
Sbjct: 611 GDVGFGKTEIAVRAALKAAVDNKQVAVLVPTTVLALQHYRTFAERLKGFPVRVAYLSRAK 670

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                +  L  +A G  +II+GTH L   ++++  L L+I+DE+ +FGV  + +L +   
Sbjct: 671 SAKETKSILHDLAEGHINIIVGTHKLIGKTVRFQDLGLLIIDEEQKFGVAVKERLRELKV 730

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L M+ATPIPRTL  + +G  D+S I   P  R+PI+T I   N   E+I E +   
Sbjct: 731 NVDTLTMSATPIPRTLQFSLMGARDLSVIQTPPPNRRPIQTEIHTFNH--EIIAEAVNFE 788

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +S   + + +  ++      + +++VE++        + + + HG+M+  + E ++  F 
Sbjct: 789 MSRNGQVFIVTNRVASL--GSLKALVEKYVP-----DARVVVGHGQMAPAELEKIILDFV 841

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +LI+TT++E GID+ +A+ I+I+ A  FGL+ LHQ+RGRVGR  + + C LL  P
Sbjct: 842 NYDYDVLISTTIVENGIDIPNANTILIDAAHTFGLSDLHQMRGRVGRSSQKAFCYLL-AP 900

Query: 599 PLS---KNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
           PLS    ++  RL  ++   D   G  IA +DL  R  G +LG +QSG 
Sbjct: 901 PLSILKDDARRRLQAIEEFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGF 949


>gi|160947369|ref|ZP_02094536.1| hypothetical protein PEPMIC_01303 [Parvimonas micra ATCC 33270]
 gi|158446503|gb|EDP23498.1| hypothetical protein PEPMIC_01303 [Parvimonas micra ATCC 33270]
          Length = 1168

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 132/429 (30%), Positives = 228/429 (53%), Gaps = 19/429 (4%)

Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +W  +  R +   DE+    + L   R + +   G   + +    ++   +  +  T SQ
Sbjct: 575 DWIKTKTRAKKVLDEIAIDLVQLYAKRDKIR---GFAFSEDTTWQKEFEDSFIYEETYSQ 631

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI +I +DM Q   M R+L GDVG GKT VAL A   A+    Q   + P  ILAQQH
Sbjct: 632 LRAINEIKKDMEQFKPMDRLLCGDVGYGKTEVALRAAFKAMMDDKQVAFLVPTTILAQQH 691

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y        N  + +E+++     A +++ L+ + +G+ +++IGTH L   ++++  L L
Sbjct: 692 YNTAIDRVGNFPVEIEMLSRFRSPAKQKEILKNVKNGKVNLLIGTHKLLSKNLEFKDLGL 751

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV+ +  L +      VL ++ATPIPRT+ ++ +G  D+S + + P  R  
Sbjct: 752 LIIDEEQRFGVKHKETLKKIKENIDVLSLSATPIPRTMQMSLVGIRDMSILDDPPEERVT 811

Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           I T ++  N  D +I E +   +  G + Y++  +I +      +  VE    + +   +
Sbjct: 812 IATFVLEYN--DSIIREAIYKEIDRGGQVYFVYNRIHDMD----KMYVELSRLVPD---A 862

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA+ H ++S+ + E++M  F+ G   +L+ TT+IE G+D+ + + +II +A+  GL+QL
Sbjct: 863 KIAMAHSKLSNKELENIMYDFQEGEYDILLCTTIIETGMDIKNCNTMIIYDADKMGLSQL 922

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QL+GR+GR    +     Y     L++ S  RL  +++  +   GF IA  DL+ R  G
Sbjct: 923 YQLKGRIGRSTRRAYAYFTYEKDKVLTEISEKRLMAIRDFSEFGSGFKIAMRDLELRGAG 982

Query: 632 EILGIKQSG 640
            ILG  QSG
Sbjct: 983 NILGECQSG 991


>gi|225022992|ref|ZP_03712184.1| hypothetical protein CORMATOL_03039 [Corynebacterium matruchotii ATCC
            33806]
 gi|224944215|gb|EEG25424.1| hypothetical protein CORMATOL_03039 [Corynebacterium matruchotii ATCC
            33806]
          Length = 1223

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 205/385 (53%), Gaps = 17/385 (4%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            Q++  N PF  T+ Q +AI  + QDM Q   M R++ GDVG GKT VA+ A   AV+ G 
Sbjct: 627  QELEDNFPFVETEDQMAAIAAVKQDMEQPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGK 686

Query: 323  QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            Q  ++ P  +LAQQH     +      + +  ++     +  ++ L  +  G   I+IGT
Sbjct: 687  QVAVLVPTTLLAQQHLATFAERMAGFPVTIRGLSRFTSASDAKEILSGLRDGSVDIVIGT 746

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            H L Q  +Q+ +L LV+VDE+ RFGV+ +  +    +   VL M+ATPIPRTL ++  G 
Sbjct: 747  HRLLQTGVQWKQLGLVVVDEEQRFGVEHKEHIKAMRSHVDVLTMSATPIPRTLEMSMAGI 806

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNF 500
             ++S I   P  R PI T  +      ++   ++  L    + +++  ++   EKK    
Sbjct: 807  REMSTILTPPEDRHPILT-YVGAQEEKQIAAAIRRELLRDGQVFFVHNKVSDIEKKAREL 865

Query: 501  RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            R++V           + I + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A
Sbjct: 866  RNLVPE---------ARIVVAHGQMSEEVLERTVQGFWDREYDVLVCTTIVETGLDIANA 916

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED-- 616
            + +I+ENA H GL+QLHQLRGRVGR         LY     L++ SY RL+ +    D  
Sbjct: 917  NTLIVENAHHMGLSQLHQLRGRVGRSRSRGYAYFLYPKGTTLTETSYDRLATIAQNNDLG 976

Query: 617  -GFLIAEEDLKQRKEGEILGIKQSG 640
             G  +A +DL+ R  G +LG +QSG
Sbjct: 977  AGMAVAMKDLEMRGAGNVLGAQQSG 1001


>gi|332703850|ref|ZP_08423938.1| transcription-repair coupling factor [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553999|gb|EGJ51043.1| transcription-repair coupling factor [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 1158

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 199/379 (52%), Gaps = 21/379 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q  AI+D+++DM +   M R++ GDVG GKT VA+ A   AV  G Q  ++ P 
Sbjct: 608 FEETPDQARAIRDVIEDMERAEPMDRLVCGDVGFGKTEVAMRAAFRAVLDGKQVALLCPT 667

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QHY   K   Q   I V +++  +P+  ++  L+    GQ  I+IGTH +    +
Sbjct: 668 TVLAEQHYLNFKNRMQGFPISVAMLSRFVPKPKQKAVLQAAERGQVDILIGTHRMLSSDV 727

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
               + L+I+DE+ RFGV+ + KL +       L +TATPIPRTL L+  G   +S I  
Sbjct: 728 SLPNIGLLILDEEQRFGVKHKEKLKELKKNVDSLTLTATPIPRTLQLSLSGIRGLSVIET 787

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLS----EGKKAYWICPQIEEKKESNFRSVVER 506
            P  RKP++T +     ++   E LK +L+     G + +W+  ++    E+     V +
Sbjct: 788 PPVDRKPVETAL-----VERDAEMLKTILAREMERGGQIFWVHNRVHSLAEAE--DYVRK 840

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                    + I   HG+M +   E  +  F +G   +L+ T +IE G+D  +A+ ++++
Sbjct: 841 LAP-----DARIGHAHGQMPERQLEETIHKFWHGELDILVCTAIIESGLDFPNANTMVVD 895

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIA 621
            A  FGL QL+QLRGRVGR +  +    +      LS  +  RL V+ + +    GF IA
Sbjct: 896 QAHMFGLGQLYQLRGRVGRSDRQAYAYFVVPSLDSLSDLAKKRLQVILDMDFLGAGFHIA 955

Query: 622 EEDLKQRKEGEILGIKQSG 640
            EDL+ R  G ILG  QSG
Sbjct: 956 MEDLRLRGAGNILGEAQSG 974


>gi|240850603|ref|YP_002972003.1| transcription repair coupling factor [Bartonella grahamii as4aup]
 gi|240267726|gb|ACS51314.1| transcription repair coupling factor [Bartonella grahamii as4aup]
          Length = 1166

 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 129/403 (32%), Positives = 222/403 (55%), Gaps = 28/403 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T+ Q +AI  +L D++    M R++ GDVG GKT VA+ +   A   G Q  ++ P
Sbjct: 616  PYEETEDQMNAIDAVLDDLASGKPMDRLICGDVGFGKTEVAIRSAFVAALNGYQVAVVVP 675

Query: 330  IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERI----AHGQAHIIIGTHA 384
              +L++QHY+ FI ++       + +  G+  +  + K L ++    + G   I+IGTHA
Sbjct: 676  TTLLSRQHYKTFISRFQG-----LPVKIGHASRLVKAKELAQVKKGVSDGTIDIVIGTHA 730

Query: 385  LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
            L   ++ + +L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  +
Sbjct: 731  LLSGAVNFLRLGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRTLGLALSGVRE 790

Query: 445  ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            +S IT  P  R  ++T I P + +  + E L      G +++++CP+I +       + V
Sbjct: 791  LSLITTPPIDRMVVRTFISPFDAL-VIRETLLREYYRGGQSFYVCPRISD------LAFV 843

Query: 505  ERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            E +  L  H       + HG+M     + +M++F +G   +L++TT+IE G+D+  A+ +
Sbjct: 844  EEY--LKTHVPELKFVVAHGQMPAGQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANTL 901

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618
            I+  AE FGL+ L+QLRGRVGR ++ +  +  +     L+  +  RL VL++ +    GF
Sbjct: 902  IVHRAEMFGLSALYQLRGRVGRSKQRAYALFTFPAGKVLTAAADRRLKVLQSLDTLGAGF 961

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEI 658
             +A  D+  R  G  LG +QSG  K   F + Q  L +++ E+
Sbjct: 962  QLASHDMDIRGSGNFLGEEQSGHIKEVGFELYQKMLEEAVTEL 1004


>gi|269215535|ref|ZP_06159389.1| transcription-repair coupling factor [Slackia exigua ATCC 700122]
 gi|269131022|gb|EEZ62097.1| transcription-repair coupling factor [Slackia exigua ATCC 700122]
          Length = 1150

 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 201/377 (53%), Gaps = 15/377 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q SAI ++  DM     M R++ GDVG GKT VAL A   AV+   Q +++ P
Sbjct: 606 PYAETPDQLSAIAEVKADMQSSRPMDRLVCGDVGFGKTEVALRAAFKAVQDDKQVMVLCP 665

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHY   K   +   + VE+++     A +++ L   A G   +++GTH L    
Sbjct: 666 TTILAQQHYATFKDRFEPFHVSVEVLSRFRTPAEQKETLAGFADGTVDVLVGTHRLLSRD 725

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +    L LVI+DE+ RFGV  + +L        VL ++ATPIPRTL ++  G  D S I 
Sbjct: 726 VNPRDLGLVIIDEEQRFGVGHKEQLKNLREHIDVLTLSATPIPRTLQMSLSGVRDTSLIL 785

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R+P++  +   +  D V + ++  +  G + Y++  ++        R++ +  + 
Sbjct: 786 TPPDERRPVEVHVGEWD-PDIVSDAIRREMQRGGQVYYVSNRV--------RTIEDALDH 836

Query: 510 LHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           + +    + I   HG+M   + E+VM+ F  G   +L+ATT+IE GID    + ++IE++
Sbjct: 837 VRDAAPEARIGAAHGKMGKEELEAVMEDFAAGAIDVLVATTIIESGIDNPHTNTLVIEDS 896

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL---KNTEDGFLIAEE 623
           +  GLAQ++QL+GRVGR    +    ++    PL++ +  RL  +   +    G  +A  
Sbjct: 897 QRLGLAQMYQLKGRVGRSSLQAYAYFMFPSEVPLTEEATARLQAIDEHRELGSGMQVAMR 956

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G +LG +QSG
Sbjct: 957 DLEIRGAGSLLGAEQSG 973


>gi|239917090|ref|YP_002956648.1| transcription-repair coupling factor Mfd [Micrococcus luteus NCTC
            2665]
 gi|281414448|ref|ZP_06246190.1| transcription-repair coupling factor [Micrococcus luteus NCTC 2665]
 gi|239838297|gb|ACS30094.1| transcription-repair coupling factor Mfd [Micrococcus luteus NCTC
            2665]
          Length = 1218

 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 205/376 (54%), Gaps = 13/376 (3%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF  T  Q + I+D+ +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P
Sbjct: 668  PFIETPDQLTTIEDVKKDMEEAVPMDRLVSGDVGFGKTEVAVRAAFKAVQDGKQVAVLVP 727

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QH++          + V  ++        ++ +E +AHG+  ++IGTH L  D 
Sbjct: 728  TTLLARQHHQTFSDRFAGFPVKVAALSRFQTAKESKEVVEGLAHGEVDVVIGTHRLLSDQ 787

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +Q+  L LV+VDE+ RFGV+ +  L +  T   VL M+ATPIPRTL ++  G  + S + 
Sbjct: 788  VQFKDLGLVVVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLA 847

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R P+ T + P +         + ++ EG+  Y         + +    V +R   
Sbjct: 848  TAPEERHPVLTSVGPYSDQQVTAAIRRELMREGQVFYV------HNRVTTIDKVAKRIAE 901

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            L     + IA+ HG+MS+   E +M  F      +L++TT+IE G+D+ +A+ +I+E+A 
Sbjct: 902  LVPE--ARIAVAHGKMSEARLEQIMVDFWERKLDVLVSTTIIETGLDIANANTLIVEDAH 959

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEED 624
             +GL+QLHQLRGRVGRG E +    LY P  PL + +  RL  +    +   G  +A +D
Sbjct: 960  RYGLSQLHQLRGRVGRGRERAYAYFLYDPQKPLGEVALERLKAVATHNELGAGMQLAMKD 1019

Query: 625  LKQRKEGEILGIKQSG 640
            L+ R  G +LG +QSG
Sbjct: 1020 LEIRGAGNLLGGEQSG 1035


>gi|317182726|dbj|BAJ60510.1| DNA recombinase [Helicobacter pylori F57]
          Length = 621

 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 190/619 (30%), Positives = 293/619 (47%), Gaps = 72/619 (11%)

Query: 44  LLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           LL Y P  + D    +H+   +S + E  I+    Y      F   KR  YK L      
Sbjct: 20  LLVYTPKGYKDLNLLKHFELGLSGVLEVDILDKRNYAKVLKIFAYSKRF-YKNLE----- 73

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
               L F+  +    N F  G  + + GK+++             F+ +  +N P I   
Sbjct: 74  ----LVFFNYSAFHYNQFKTGESLFIYGKLEQSS-----------FNQAYIINTPKILTE 118

Query: 160 YSLPTGLSVDLFKKI-----IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           +    G    +FKK+     I E L +L  L E ++K+ +++     + E F     P  
Sbjct: 119 F----GKISLIFKKVKNHKKIQENLQKLISL-ENLKKEGIKENIAHLLLEIF--FPTPHF 171

Query: 215 AKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            KDFE    ++S     L Y E+L     L   + QF  +I  P N E   A   + ++P
Sbjct: 172 VKDFETYKNFSSQHLNALKYIEMLFYMKNLERKKLQFSAKIACPNNSERLKA--FITSLP 229

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP 
Sbjct: 230 FKLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLMAPT 287

Query: 331 GILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            ILA+Q Y    +F+  Y +     VE++ G   +       E I H    ++IGT AL 
Sbjct: 288 SILAKQLYNEALKFLPPYFE-----VELLLGGSYKKRSNHLFETITH----VVIGTQALL 338

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGD 442
            D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L     
Sbjct: 339 FDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAF 398

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S
Sbjct: 399 VKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLS 457

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E  +   + F   +    G+  D +KE V++ F+     +L+ATT+IEVGI +   S+
Sbjct: 458 LSEGASFWQKRF-KKVYTTSGQ--DKNKEEVIEEFREFGS-ILLATTLIEVGISLPRLSV 513

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF IAE
Sbjct: 514 MVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFKIAE 569

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DL+ RK G++L G +QSG
Sbjct: 570 LDLEYRKSGDLLQGGEQSG 588


>gi|317178272|dbj|BAJ56061.1| transcription-repair coupling factor [Helicobacter pylori F16]
          Length = 999

 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 134/401 (33%), Positives = 217/401 (54%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  G   +++GTHA+     
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVELGLIDVLVGTHAIL--GA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKI 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 659 PPIDRKPSRTFLKEKNDELLKEIIHR---ELRRNGQIFYIHNHIASISKVKTKLEDLIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ I+I+
Sbjct: 716 L---------KIAILHSQINAHESEEIMLEFDKGNYQVLLCTSIVESGIHLPNANTIVID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|282878269|ref|ZP_06287065.1| transcription-repair coupling factor [Prevotella buccalis ATCC
           35310]
 gi|281299687|gb|EFA92060.1| transcription-repair coupling factor [Prevotella buccalis ATCC
           35310]
          Length = 1153

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 128/394 (32%), Positives = 206/394 (52%), Gaps = 13/394 (3%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   + +  +  ++  +  +  T  Q  A  ++  DM +   M R++ GDVG GKT VA+
Sbjct: 571 GFSFSADNYMQHELEASFLYEDTPDQVKATAEVKADMEKARPMDRLVCGDVGFGKTEVAI 630

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   A     Q  ++ P  +LA QHY+  ++  +   + V+ ++        R+ LE +
Sbjct: 631 RAAFKAACDSKQVAVLVPTTVLAFQHYKTFQERLRGMPVRVDYLSRARSAKQTRQVLEDL 690

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A G+  IIIGTH L   S++++ L L+I+DE+ +FGV  + KL +  T    L M+ATPI
Sbjct: 691 AAGRIDIIIGTHKLIGKSVKWHDLGLLIIDEEQKFGVSTKEKLRKLKTNVDTLTMSATPI 750

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL  + +G  D+S +   P  R PI T  I +   + + + +   +S   + Y++  +
Sbjct: 751 PRTLQFSLMGARDMSVMRTPPPNRYPIHTE-IGVYGHEIITDAINFEMSRNGQVYFVNDR 809

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           I    E      +E+   L       +AI HG+M     E+++  F N    +L++T+++
Sbjct: 810 ISTLPE------IEKM-ILKYVPDCRVAIGHGQMPPEQLETILIDFMNHDYDVLLSTSIV 862

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLS 609
           E GID+ +A+ III NA   GL+ LHQ+RGRVGR    + C LL  P   L+  +  RL 
Sbjct: 863 ENGIDISNANTIIINNAHRIGLSDLHQMRGRVGRSNRKAFCYLLAPPKSVLTPEARRRLE 922

Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            L+   +   GF IA +DL  R  G +LG +QSG
Sbjct: 923 ALETFSELGSGFNIAMQDLDIRGAGNLLGAEQSG 956


>gi|302560241|ref|ZP_07312583.1| transcription-repair coupling factor [Streptomyces griseoflavus
            Tu4000]
 gi|302477859|gb|EFL40952.1| transcription-repair coupling factor [Streptomyces griseoflavus
            Tu4000]
          Length = 1187

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 147/433 (33%), Positives = 236/433 (54%), Gaps = 27/433 (6%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 585  DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGADSPWQRELEDAFPYAETPDQ 641

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 642  LTTIAEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 701

Query: 338  Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            +  F ++Y Q   ++V+ ++        +  LE +  G   ++IGTH LF    ++  L 
Sbjct: 702  FGTFSERYAQ-FPVVVKALSRFQSDTEAKAVLEGLREGSVDVVIGTHRLFSSETKFKDLG 760

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 761  LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 820

Query: 457  PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
            P+ T + P    +I   I R   +L EG + ++I  ++E  ++  +  R +V        
Sbjct: 821  PVLTFVGPYEQKQIGAAIRR--ELLREG-QVFYIHNRVESIDRAAARLREIVPE------ 871

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 872  ---ARIATAHGQMSESALEQVVVDFWEKKSDVLVSTTIVESGIDISNANTLIVERGDNFG 928

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
            L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 929  LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 988

Query: 628  RKEGEILGIKQSG 640
            R  G +LG +QSG
Sbjct: 989  RGAGNLLGGEQSG 1001


>gi|301335326|ref|ZP_07223570.1| transcription-repair coupling factor [Chlamydia trachomatis L2tet1]
 gi|301336312|ref|ZP_07224514.1| transcription-repair coupling factor [Chlamydia muridarum
           MopnTet14]
          Length = 1081

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 135/387 (34%), Positives = 203/387 (52%), Gaps = 13/387 (3%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G+   K   + P+  T  Q  AI  I  DM     M R++ GD G GKT + + A   AV
Sbjct: 543 GEEVIKFAESFPYEETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAV 602

Query: 319 EAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             G  Q ++M P  ILA QH+E   +      I + +++        +K LE IA G+  
Sbjct: 603 CDGQKQVIVMVPTTILANQHFETFSQRMAGLPITIGMLSRFSQGKAMKKTLEDIAQGKID 662

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH +   +I++Y   L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL L
Sbjct: 663 ILIGTHKVINKAIEFYNPGLLIIDEEQRFGVKAKDALKERYPTIDCLTVSATPIPRTLYL 722

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +  G  D+S IT  P  R P+ T ++  +  + +   ++  L  G + Y I  +I    E
Sbjct: 723 SLSGARDLSLITMPPLDRLPVSTFVMEHSE-ETLSAAIRHELLRGGQVYVIHNRI----E 777

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S FR + E   +L     + I I HG+M   +  S+   FK     +L+AT +IE GID+
Sbjct: 778 SIFR-LGETIRTLIPE--ARIGIAHGQMHSEELASIFYKFKTQQTNVLVATALIENGIDI 834

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE 615
            +A+ I+I++A+ FG+A L+Q++GRVGR  + + C  L  +   LS  +  RL  L   E
Sbjct: 835 PNANTILIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVSHLDRLSGPASKRLEALNKQE 894

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              G  IA  DL+ R  G ILG  QSG
Sbjct: 895 YGGGMKIALHDLEIRGAGNILGTDQSG 921


>gi|242309312|ref|ZP_04808467.1| transcription-repair coupling factor [Helicobacter pullorum MIT
           98-5489]
 gi|239524353|gb|EEQ64219.1| transcription-repair coupling factor [Helicobacter pullorum MIT
           98-5489]
          Length = 1008

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 206/380 (54%), Gaps = 19/380 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  TK Q  AI++I +D+S    M R+L GDVG GKT VA+ AM  +  +G Q+ I+ P 
Sbjct: 494 FIYTKDQSKAIEEIFKDLSSGRVMDRLLSGDVGFGKTEVAMNAMFVSYLSGYQSAIITPT 553

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QHY  IK   ++  I +  +   +    ++  LE +  G  H ++GTHAL   ++
Sbjct: 554 TLLAYQHYLTIKSRFESFGIKIARLDRYIGTKEKKAILEGLKDGTIHAVVGTHALL--NV 611

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+++DE+H+FGV+Q+ ++ + A   H+L M+ATPIPRTL +       +S++ E
Sbjct: 612 SFKNLALIVIDEEHKFGVKQKERIKEIAQNTHLLSMSATPIPRTLNMALSHIKGLSELKE 671

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P+ R P +T +   +   + EVI R    L  G + ++I   I     S      E   
Sbjct: 672 APSQRLPTRTFVKEYSDSLLKEVILR---ELRRGGQVFYIHNNI-----STINQKKEEIL 723

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           ++  H    IAI+H ++   + E+++  F  G   LL+ T+++E GI + +A+ I++  +
Sbjct: 724 TILPHL--KIAILHSQIQAQESENIIMEFAKGNFNLLLCTSIVESGIHLPNANTILVGRS 781

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEE 623
           + FG+A LHQLRGRVGRG +   C  L      +++ +  RL  L+       G  +A  
Sbjct: 782 DCFGIADLHQLRGRVGRGSKEGFCYFLIEDSSSITQEAQKRLLALEKNAYLGSGGALAYH 841

Query: 624 DLKQRKEGEILGIKQSGMPK 643
           DL+ R  G +LG  QSG  K
Sbjct: 842 DLEIRGGGNLLGEAQSGHIK 861


>gi|317179704|dbj|BAJ57492.1| DNA recombinase [Helicobacter pylori F30]
          Length = 621

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 189/619 (30%), Positives = 293/619 (47%), Gaps = 72/619 (11%)

Query: 44  LLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           LL Y P  + D    +H+   +S + E  I+    Y      F   KR  YK L      
Sbjct: 20  LLVYTPKGYKDLNLLKHFELGLSGVLEVDILDKRNYAKVLKIFAYSKRF-YKNLE----- 73

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
               L F+  +    N F  G  + + GK+++             F+ +  +N P I   
Sbjct: 74  ----LVFFNYSAFHHNQFKTGESLFIYGKLEQSS-----------FNQAYIINTPKILTE 118

Query: 160 YSLPTGLSVDLFKKI-----IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           +    G    +FKK+     I E L +L  L E ++K+ +++     + E F     P  
Sbjct: 119 F----GKISLIFKKVKNHKKIQENLQKLISL-ENLKKEGIKENIARLLLEIF--FPTPHF 171

Query: 215 AKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            KDFE    ++S     L Y E+L     L   + QF  +I  P N E   A   + ++P
Sbjct: 172 VKDFETHKNFSSQHLNALKYIEMLFYMKNLERKKLQFSAKIACPNNSERLKA--FIASLP 229

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP 
Sbjct: 230 FQLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLMAPT 287

Query: 331 GILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            ILA+Q Y    +F+  Y +     VE++ G   +       E I H    ++IGT AL 
Sbjct: 288 SILAKQLYNEALKFLPPYFE-----VELLLGGSYKKRSNHLFETITH----VVIGTQALL 338

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGD 442
            D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L     
Sbjct: 339 FDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAF 398

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S
Sbjct: 399 VKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLS 457

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E  +   + F   +    G+  D +KE V++ F+     +L+ATT+IEVGI +   S+
Sbjct: 458 LSEGASFWQKRF-KKVYTTSGQ--DKNKEEVIEEFREFGS-ILLATTLIEVGISLPRLSV 513

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           +++   E  GLA LHQLRGRV R      C L       +    RL    +  DGF IAE
Sbjct: 514 MVVLAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFKIAE 569

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DL+ RK G++L G +QSG
Sbjct: 570 LDLEYRKSGDLLQGGEQSG 588


>gi|297157723|gb|ADI07435.1| transcription-repair coupling factor [Streptomyces bingchenggensis
           BCW-1]
          Length = 1200

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/433 (34%), Positives = 236/433 (54%), Gaps = 27/433 (6%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 575 DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGADTPWQRELEDAFPYAETPDQ 631

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 632 LTTIGEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 691

Query: 338 Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           Y  F ++Y Q   ++V+ ++        R  LE +  G   I+IGTH LF    ++  L 
Sbjct: 692 YGTFTERYGQFP-VVVKALSRFQTDTEARAVLEGLRDGAVDIVIGTHRLFSSETKFKDLG 750

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LV+VDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 751 LVVVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 810

Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
           P+ T + P    +I   I R   +L EG + ++I  ++E  ++  +  R +V        
Sbjct: 811 PVLTFVGPYEERQIGAAIRR--ELLREG-QVFYIHNRVESIDRAAARLREIVPE------ 861

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 862 ---ARIATAHGQMSENVLEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFG 918

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
           L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 919 LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 978

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +QSG
Sbjct: 979 RGAGNLLGGEQSG 991


>gi|308183623|ref|YP_003927750.1| ATP-dependent DNA helicase RecG [Helicobacter pylori PeCan4]
 gi|308065808|gb|ADO07700.1| ATP-dependent DNA helicase RecG [Helicobacter pylori PeCan4]
          Length = 623

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 150/442 (33%), Positives = 228/442 (51%), Gaps = 35/442 (7%)

Query: 212 PRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           P   KDFE    + S     L Y E+L     L   + QF  +I  P N E   A   + 
Sbjct: 169 PHFVKDFETNKNFPSQHLNALKYIEMLFYMKNLERKKLQFGAKIACPNNSERLKA--FIA 226

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF  T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++M
Sbjct: 227 SLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLM 284

Query: 328 APIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AP  ILA+Q Y    +F+  Y +     VE++ G   +       E I H    ++IGT 
Sbjct: 285 APTSILAKQLYNEALKFLPSYFE-----VELLLGGSHKKRSNHLFETITH----VVIGTQ 335

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTS 439
           AL  D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L  
Sbjct: 336 ALLFDKRDLDEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAK 395

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  
Sbjct: 396 SAFVKTTMIREIPYP-KEIETLVLHKREFKIVMEKISEEIAKNHQVIVVYPLVNESEKIP 454

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           + S+ E  +   + F  ++    G+  D +KE V++ F+  +  +L+ATT+IEVGI +  
Sbjct: 455 YLSLSEGASFWQKRF-KNVYTTSGQ--DKNKEEVIEEFRE-SGSILLATTLIEVGISLPR 510

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            S+++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF 
Sbjct: 511 LSVMVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFK 566

Query: 620 IAEEDLKQRKEGEIL-GIKQSG 640
           IAE DL+ RK G++L G +QSG
Sbjct: 567 IAELDLEYRKSGDLLQGGEQSG 588


>gi|317013364|gb|ADU83972.1| transcription-repair coupling factor (trcF) [Helicobacter pylori
           Lithuania75]
          Length = 999

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 133/401 (33%), Positives = 217/401 (54%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  G   +++GTHA+     
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVGLGLIDVLVGTHAIL--GA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKT 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++   +++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIYR---ELRRNGQIFYIHNHIASISKVKTKLENLIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 LK---------IAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  +A
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESVA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|182438215|ref|YP_001825934.1| putative transcriptional-repair coupling factor [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466731|dbj|BAG21251.1| putative transcriptional-repair coupling factor [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 1177

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/381 (35%), Positives = 217/381 (56%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 625 PYAETPDQLSTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 684

Query: 330 IGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             +L QQHY  F ++Y+Q   + V  ++    +   R  LE +  G   ++IGTH LF  
Sbjct: 685 TTLLVQQHYGTFTERYSQFP-VNVRALSRFQSETESRATLEGLRDGAVDLVIGTHRLFSS 743

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             ++  L LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S I
Sbjct: 744 ETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTI 803

Query: 449 TEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
           T  P  R P+ T + P    +I   + R   +L EG + ++I  ++E  ++  +  R +V
Sbjct: 804 TTPPEERHPVLTFVGPYEEKQIGAAVRR--ELLREG-QVFYIHNRVESIDRAAARLREIV 860

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I
Sbjct: 861 PE---------ARIATAHGQMSEAALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLI 911

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFL 619
           +E  ++FGL+QLHQLRGRVGRG +      LY P  PL++ ++ RL+ + ++TE   G  
Sbjct: 912 VERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMY 971

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A +DL+ R  G +LG +QSG
Sbjct: 972 VAMKDLEIRGAGNLLGGEQSG 992


>gi|326778864|ref|ZP_08238129.1| transcription-repair coupling factor [Streptomyces cf. griseus
           XylebKG-1]
 gi|326659197|gb|EGE44043.1| transcription-repair coupling factor [Streptomyces cf. griseus
           XylebKG-1]
          Length = 1177

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/381 (35%), Positives = 217/381 (56%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 625 PYAETPDQLSTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 684

Query: 330 IGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             +L QQHY  F ++Y+Q   + V  ++    +   R  LE +  G   ++IGTH LF  
Sbjct: 685 TTLLVQQHYGTFTERYSQFP-VNVRALSRFQSETESRATLEGLRDGAVDLVIGTHRLFSS 743

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             ++  L LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S I
Sbjct: 744 ETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTI 803

Query: 449 TEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
           T  P  R P+ T + P    +I   + R   +L EG + ++I  ++E  ++  +  R +V
Sbjct: 804 TTPPEERHPVLTFVGPYEEKQIGAAVRR--ELLREG-QVFYIHNRVESIDRAAARLREIV 860

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I
Sbjct: 861 PE---------ARIATAHGQMSEAALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLI 911

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFL 619
           +E  ++FGL+QLHQLRGRVGRG +      LY P  PL++ ++ RL+ + ++TE   G  
Sbjct: 912 VERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMY 971

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A +DL+ R  G +LG +QSG
Sbjct: 972 VAMKDLEIRGAGNLLGGEQSG 992


>gi|304383034|ref|ZP_07365510.1| transcription-repair coupling factor [Prevotella marshii DSM 16973]
 gi|304335817|gb|EFM02071.1| transcription-repair coupling factor [Prevotella marshii DSM 16973]
          Length = 1143

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/376 (32%), Positives = 196/376 (52%), Gaps = 15/376 (3%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q    +++  DM  +  M R++ GDVG GKT +A+ A   A   G Q  ++ P 
Sbjct: 579 YEDTPDQLKTTQEVKADMESERPMDRLVCGDVGFGKTEIAVRAAFKAAFDGKQTAVLVPT 638

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QHY    +  +   + V+ ++     +  +  LE +A G+  I++GTH L   ++
Sbjct: 639 TVLAFQHYRTFSERLKLFPVRVDYLSRARTASQMKSILEDLAAGKIDILVGTHKLVSKNV 698

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+++DE+ +FGV  + KL         L M+ATPIPRTL  + +G  D+S +  
Sbjct: 699 VWKDLGLLVIDEEQKFGVSTKEKLRALKANVDTLTMSATPIPRTLQFSLMGARDMSIMRT 758

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T I   N  D + + ++  +S   + Y +         +N   +    +S+
Sbjct: 759 PPPNRYPVCTEIATFND-DAMYDAIEFEMSRNGQTYVV--------NNNIAQLQNIADSI 809

Query: 511 HEHFTSSIAII-HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            +H      +I HG+MS    E+V+  F N    +L++TT+IE GID+ +A+ III  A+
Sbjct: 810 VQHIPDCRVVIGHGQMSPSRLEAVIMGFMNHDYDVLLSTTIIENGIDIPNANTIIIRGAQ 869

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR-----LSVLKNTEDGFLIAEED 624
           HFGL+ LHQ+RGRVGR    + C L+  P ++ N+  R     L +      GF IA +D
Sbjct: 870 HFGLSDLHQMRGRVGRSNRKAFCYLIAPPLVTVNNEARRRLEALEMFSGLGSGFNIAMQD 929

Query: 625 LKQRKEGEILGIKQSG 640
           L  R  G +LG +QSG
Sbjct: 930 LDIRGAGNLLGSEQSG 945


>gi|291445280|ref|ZP_06584670.1| transcriptional-repair coupling factor [Streptomyces roseosporus
           NRRL 15998]
 gi|291348227|gb|EFE75131.1| transcriptional-repair coupling factor [Streptomyces roseosporus
           NRRL 15998]
          Length = 1184

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/381 (35%), Positives = 218/381 (57%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 632 PYAETPDQLSTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 691

Query: 330 IGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             +L QQHY  F ++Y+Q   + V  ++    ++  +  LE +  G   ++IGTH LF  
Sbjct: 692 TTLLVQQHYGTFTERYSQFP-VNVRALSRFQSESESKATLEGLKDGSVDLVIGTHRLFSS 750

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             ++  L LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S I
Sbjct: 751 ETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTI 810

Query: 449 TEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
           T  P  R P+ T + P    +I   I R   +L EG + ++I  ++E  ++  +  R +V
Sbjct: 811 TTPPEERHPVLTFVGPYEEKQIGAAIRR--ELLREG-QVFYIHNRVESIDRAAARLREIV 867

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I
Sbjct: 868 PE---------ARIATAHGQMSEAALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLI 918

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFL 619
           +E  ++FGL+QLHQLRGRVGRG +      LY P  PL++ ++ RL+ + ++TE   G  
Sbjct: 919 VERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMY 978

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A +DL+ R  G +LG +QSG
Sbjct: 979 VAMKDLEIRGAGNLLGGEQSG 999


>gi|325678530|ref|ZP_08158141.1| transcription-repair coupling factor [Ruminococcus albus 8]
 gi|324109749|gb|EGC03954.1| transcription-repair coupling factor [Ruminococcus albus 8]
          Length = 1153

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 136/428 (31%), Positives = 211/428 (49%), Gaps = 17/428 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT    +  A  + +A ++  L  ++Q  K  G     +    ++      +  T  Q 
Sbjct: 561 EWTRTRNKVRAAVKDMAEELTKLYAQRQMAK--GYAFEPDDDWMREFEERFDYQETDDQL 618

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI +I  DM ++  M R+L GDVG GKT VAL A    VE G Q  I+AP  +LA QHY
Sbjct: 619 RAINEIKGDMEKQTPMDRLLCGDVGFGKTEVALRAAFKCVENGKQCAILAPTTVLAWQHY 678

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +   K  ++  I V++++       +   +  +  G   +IIGTH L    +++  L L 
Sbjct: 679 QTAIKRFEHFPIKVQLLSRFRKPKEQSAIVRELKRGTVDLIIGTHRLVSKDVEFKDLGLA 738

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + K  +      +L ++ATPIPRTL +   G  D+S I E P  R PI
Sbjct: 739 IIDEEQRFGVAHKEKFKESHPGVDILTLSATPIPRTLNMALSGIRDMSVIEEPPMDRHPI 798

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS- 517
           +T +I  N    +++ +   L  G + Y+I  +I+        +++   N L      + 
Sbjct: 799 QTYVIEHNE-GVILQAISKELRRGGQVYYIHNRID--------TILRTVNRLQSSLPDAR 849

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I   HG+M + +   +          +L+ TT+IE GIDV + + +IIE+A+  GL+QLH
Sbjct: 850 IGYAHGQMEEKELSEIWRQVVEHEIDILVCTTLIETGIDVPNVNTLIIEDADRLGLSQLH 909

Query: 578 QLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGRVGR    +     +     L++ +  RL  ++       GF IA  DL+ R  G 
Sbjct: 910 QLRGRVGRSNRRAFAYFTFRRGKVLNETASKRLQAIREFTQFGSGFHIAMRDLEIRGAGS 969

Query: 633 ILGIKQSG 640
           IL  KQ G
Sbjct: 970 ILSAKQHG 977


>gi|291276629|ref|YP_003516401.1| ATP-dependent DNA helicase [Helicobacter mustelae 12198]
 gi|290963823|emb|CBG39659.1| ATP-dependent DNA helicase [Helicobacter mustelae 12198]
          Length = 615

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 178/557 (31%), Positives = 256/557 (45%), Gaps = 54/557 (9%)

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ---DVNFPLI 156
           +ITL+ F  K    + +F   +K+ + GK++    ++ ++ P  +  ++       FP I
Sbjct: 73  DITLIIFNHK-PFHRKIFQPNKKMLIHGKLQIQLGQLSLIQPKCVSTSNTILLHFKFPSI 131

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
                  + L   L + +  +AL   P+ P  I          P + E F+   NP    
Sbjct: 132 RD-----STLQDILSRHLTHDALLASPLPPSLI----------PHLLEIFHP--NPSFLH 174

Query: 217 DFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
            FE    +     E L + E+      L   R+ F  +I           Q  + ++PFS
Sbjct: 175 YFETHGNFPPKTLEALKFIEIYRHIHTLSTKRRHFPAKISC-----KNPYQDFVTSLPFS 229

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T SQ SAI  I +D+S +    RI+ GDVG GKT+V L ++  A     Q ++M P  I
Sbjct: 230 LTNSQTSAIATIAKDLSGERAARRIIMGDVGCGKTIVILASVVMAYPH--QCLLMVPTTI 287

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA Q YE  KK      I +  I G   +  ++   E    G AH IIGT AL       
Sbjct: 288 LAFQIYEEAKKLLP-PYIQIRCIAGKESRKEKQGGKEG---GNAHFIIGTQALLYREFDV 343

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKA--------TAPHVLLMTATPIPRTLVLTSLGDID 444
             L LV+ DEQHRFG  QR  L + A          PH L  +ATPIPRTL +     ID
Sbjct: 344 QNLALVMTDEQHRFGTNQRHHLEKMAQEGDSKTLKKPHFLQFSATPIPRTLSMLHAHLID 403

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            S + + P  +K I T II     ++++  +K  +++  +   + P +EE +   + S+ 
Sbjct: 404 FSFMRDLPY-KKDITTRIITKTDFNQLLSHIKDEVAKSHQCAIVYPLVEESEHLEYLSLT 462

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           E       HF        G   D +KE V+  F++    +L+ATT+IEVGI +   S I+
Sbjct: 463 EGAPFWKRHFEGVFLTSGG---DKEKEEVLSKFRD-EGSILLATTLIEVGISLPRLSTIV 518

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I   E  GLA LHQLRGRV R      C L  + P +K    RL    N   GF IAE D
Sbjct: 519 IIAPERIGLATLHQLRGRVSRNGLKGYCFLYTNTPKNK----RLEDFCNHLSGFDIAEID 574

Query: 625 LKQRKEGEIL-GIKQSG 640
           LK R  G++  G KQSG
Sbjct: 575 LKYRSGGDLFSGEKQSG 591


>gi|239941833|ref|ZP_04693770.1| putative transcriptional-repair coupling factor [Streptomyces
           roseosporus NRRL 15998]
 gi|239988293|ref|ZP_04708957.1| putative transcriptional-repair coupling factor [Streptomyces
           roseosporus NRRL 11379]
          Length = 1177

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/381 (35%), Positives = 218/381 (57%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 625 PYAETPDQLSTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 684

Query: 330 IGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             +L QQHY  F ++Y+Q   + V  ++    ++  +  LE +  G   ++IGTH LF  
Sbjct: 685 TTLLVQQHYGTFTERYSQFP-VNVRALSRFQSESESKATLEGLKDGSVDLVIGTHRLFSS 743

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             ++  L LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S I
Sbjct: 744 ETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTI 803

Query: 449 TEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
           T  P  R P+ T + P    +I   I R   +L EG + ++I  ++E  ++  +  R +V
Sbjct: 804 TTPPEERHPVLTFVGPYEEKQIGAAIRR--ELLREG-QVFYIHNRVESIDRAAARLREIV 860

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I
Sbjct: 861 PE---------ARIATAHGQMSEAALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLI 911

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFL 619
           +E  ++FGL+QLHQLRGRVGRG +      LY P  PL++ ++ RL+ + ++TE   G  
Sbjct: 912 VERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMY 971

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A +DL+ R  G +LG +QSG
Sbjct: 972 VAMKDLEIRGAGNLLGGEQSG 992


>gi|309803761|ref|ZP_07697847.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           11V1-d]
 gi|308164170|gb|EFO66431.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           11V1-d]
          Length = 1110

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 209/381 (54%), Gaps = 21/381 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P
Sbjct: 559 PYLETPDQIKAIKEIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVP 618

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY  + +  ++  + V ++     +    +    +++G+  I++GTH +    
Sbjct: 619 TTILAEQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRD 678

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S + 
Sbjct: 679 IKFKNLGLLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVME 738

Query: 450 EKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             PA R PI+T +     N + E   R    L+   + +++  +I+  ++K S    ++ 
Sbjct: 739 TPPANRYPIQTYVTEETPNIVREACLR---ELARNGQIFFLHNKIQDIDQKVSYLSQLIP 795

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++
Sbjct: 796 E---------ARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLV 846

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLI 620
           ENA+ +GL+QL+QLRGR+GR   ++    LY     L++ S  RL+ +++      GF I
Sbjct: 847 ENADTYGLSQLYQLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKI 906

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  DL  R  G ILG +Q G 
Sbjct: 907 AMRDLSIRGAGNILGKQQHGF 927


>gi|317014937|gb|ADU82373.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Gambia94/24]
          Length = 623

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 150/442 (33%), Positives = 228/442 (51%), Gaps = 35/442 (7%)

Query: 212 PRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           P   KDFE    + S     L Y E+L     L   + QF  +I  P N E   A   + 
Sbjct: 169 PHFVKDFETNKNFPSQHLNALKYIEMLFYMKNLDRKKLQFNAKIACPNNSERLKA--FIA 226

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF  T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++M
Sbjct: 227 SLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLM 284

Query: 328 APIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AP  ILA+Q Y    +F+  Y +     VE++ G   +       E+I H    ++IGT 
Sbjct: 285 APTSILAKQLYNEALKFLPPYFE-----VELLLGGSHKKRSNHLFEKITH----VVIGTQ 335

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTS 439
           AL  D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L  
Sbjct: 336 ALLFDKRDLDEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAK 395

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  
Sbjct: 396 SAFVKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIP 454

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           + S+ E  +   + F  ++    G+  D +KE V++ F+     +L+ATT+IEVGI +  
Sbjct: 455 YLSLSEGASFWQKRF-KNVYTTSGQ--DKNKEEVIEEFRE-LGSILLATTLIEVGISLPR 510

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            S+++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF 
Sbjct: 511 LSVMVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFK 566

Query: 620 IAEEDLKQRKEGEIL-GIKQSG 640
           IAE DL+ RK G++L G +QSG
Sbjct: 567 IAELDLEYRKSGDLLQGGEQSG 588


>gi|289704875|ref|ZP_06501292.1| transcription-repair coupling factor [Micrococcus luteus SK58]
 gi|289558371|gb|EFD51645.1| transcription-repair coupling factor [Micrococcus luteus SK58]
          Length = 1218

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 204/376 (54%), Gaps = 13/376 (3%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF  T  Q + I+D+ +DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P
Sbjct: 668  PFIETPDQLTTIEDVKKDMEAAVPMDRLVSGDVGFGKTEVAVRAAFKAVQDGKQVAVLVP 727

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QH++          + V  ++        ++ +E +AHG+  ++IGTH L  D 
Sbjct: 728  TTLLARQHHQTFSDRFAGFPVKVAALSRFQTAKESKEVIEGLAHGEVDVVIGTHRLLSDQ 787

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +Q+  L LVIVDE+ RFGV+ +  L +  T   VL M+ATPIPRTL ++  G  + S + 
Sbjct: 788  VQFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLA 847

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R P+ T + P +         + ++ EG+  Y         + +    V +R   
Sbjct: 848  TAPEERHPVLTSVGPYSDQQVTAAIRRELMREGQVFYV------HNRVTTIDKVAKRIAE 901

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            L     + IA+ HG+MS+   E +M  F      +L++TT+IE G+D+ +A+ +I+E+A 
Sbjct: 902  LVPE--ARIAVAHGKMSEARLEQIMVDFWERKFDVLVSTTIIETGLDIANANTLIVEDAH 959

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEED 624
             +GL+QLHQLRGRVGRG E +    LY P  PL + +  RL  +    +   G  +A +D
Sbjct: 960  RYGLSQLHQLRGRVGRGRERAYAYFLYDPQKPLGEVALERLKAVATHNELGAGMQLAMKD 1019

Query: 625  LKQRKEGEILGIKQSG 640
            L+ R  G +LG +QSG
Sbjct: 1020 LEIRGAGNLLGGEQSG 1035


>gi|57239455|ref|YP_180591.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579431|ref|YP_197643.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161534|emb|CAH58461.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58418057|emb|CAI27261.1| Transcription-repair coupling factor [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 1122

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/392 (33%), Positives = 210/392 (53%), Gaps = 16/392 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           ++ T  Q  AI+DI  D+S    M R++ GD G GKT VAL A         Q  ++ P 
Sbjct: 585 YTETTDQLQAIQDIENDLSGGKIMNRLICGDAGFGKTEVALRAAFLVAIKNYQVAVIVPT 644

Query: 331 GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
            +L +QH+  F +++     I ++ ++  + +   +K  E I++G  HIIIGTHA+    
Sbjct: 645 TLLCKQHFAVFTERFKNFPNIKIQQLSKIVNKHEIKKIKENISYGHTHIIIGTHAILSQD 704

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + ++ L LVI+DE+ +FGV+Q+  L +     HVL ++ATPIPRTL ++  G  + S I 
Sbjct: 705 VNFFNLSLVIIDEEQQFGVKQKELLKKIKANVHVLSLSATPIPRTLHMSLCGIKNFSLIK 764

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE-GKKAYWICPQIEEKKESNFRSVVERFN 508
             P  R P+ T    I+  D  I+   +   E G + +++CPQI   K       + R  
Sbjct: 765 TPPKNRLPVITY--TIHYTDNTIKNAIIHEYERGGRTFYVCPQINNIKNI--NDNLIRLL 820

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                    I I HG++   + E+VM+ F +G   +L+ T++IE G+D+  A+ III NA
Sbjct: 821 P-----DIKIGIAHGQLPSHELENVMNDFLDGKFTVLLTTSIIECGLDIPHANTIIIHNA 875

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDL 625
           + FGLAQL+QL+GRVGR         +    ++  S  RL ++++ +    GF ++  D+
Sbjct: 876 DMFGLAQLYQLKGRVGRSNIKGYAYFILSDNINNISERRLEIIRSIDSINSGFALSLHDM 935

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             R  G ++G +QSG  K +    EL+  +LE
Sbjct: 936 DIRGFGNLIGEEQSGNIKDI--GIELYQQMLE 965


>gi|317013293|gb|ADU83901.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Lithuania75]
          Length = 623

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 190/619 (30%), Positives = 294/619 (47%), Gaps = 72/619 (11%)

Query: 44  LLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           LL Y P  + D    +H+   +S + E  I+    Y      F   KR  YK L      
Sbjct: 20  LLVYTPKGYKDLNLLKHFELGLSGVLEVDILEKRNYAKVLKIFAYSKRF-YKNLE----- 73

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
               L F+  +    + F  G  + + GK+++             F+ +  +N P I   
Sbjct: 74  ----LVFFNYSAFHHSQFKTGESLFIYGKLEQSS-----------FNQAYIINTPKILTE 118

Query: 160 YSLPTGLSVDLFKKI-----IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           +    G    +FKK+     I E L +L  L E ++K+ +++     + E F     P  
Sbjct: 119 F----GKISLIFKKVKNHKKIQENLQKLLSL-ENLKKEGVKENIARLLLEIF--FPTPHF 171

Query: 215 AKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            KDFE    + S     L Y E+L     L   + QF  +I  P N E   A   + ++P
Sbjct: 172 VKDFETNKNFPSQHLNALKYIEMLFYMKNLERKKLQFGAKIACPDNSERLKA--FITSLP 229

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP 
Sbjct: 230 FKLTHDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLMAPT 287

Query: 331 GILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            ILA+Q Y    +F+  Y +     VE++ G   +       E I H    ++IGT AL 
Sbjct: 288 SILAKQLYNEALKFLPPYFE-----VELLLGGSYKKRSNHLFETITH----VVIGTQALL 338

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGD 442
            D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L     
Sbjct: 339 FDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAF 398

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S
Sbjct: 399 VKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLS 457

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E  +   + F   + I  G+  D +KE V++ F+  +  +L+ATT+IEVGI +   S+
Sbjct: 458 LSEGASFWQKRF-KKVYITSGQ--DKNKEEVIEEFRE-SGSILLATTLIEVGISLPRLSV 513

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF IAE
Sbjct: 514 MVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFKIAE 569

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DL+ RK G++L G +QSG
Sbjct: 570 LDLEYRKSGDLLQGGEQSG 588


>gi|288799748|ref|ZP_06405207.1| transcription-repair coupling factor [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332996|gb|EFC71475.1| transcription-repair coupling factor [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 1147

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/400 (31%), Positives = 208/400 (52%), Gaps = 15/400 (3%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           + E G   +V+  +  ++  +  +  T  Q  A +++  DM     M R++ GDVG GKT
Sbjct: 562 RHEKGFAFSVDSFLQHELEASFLYEDTPDQLKATQEVKADMESGRPMDRLVCGDVGFGKT 621

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A   A     Q  ++ P  +LA QH++      +   + V+ ++        ++ 
Sbjct: 622 EVAIRAAFKAACDNKQVAVLVPTTVLAYQHFQSFSSRLKGLPVKVDYLSRARTAKQTKQV 681

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  +  G   I+IGTH L   +++++ L L+I+DE+ +FGV  + KL    T    L M+
Sbjct: 682 LTDLEKGDLSILIGTHKLISKAVKWHDLGLLIIDEEQKFGVSVKEKLRTIKTNVDTLTMS 741

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL  + +G  D+S I   P  R PI T +   +  D + + +   +S   + Y+
Sbjct: 742 ATPIPRTLQFSLMGARDMSIIRTPPPNRYPIHTELSEFSS-DVIRDAINFEMSRNGQVYF 800

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +  +I     SN +   E  N + ++     +AI HGRM   + E ++  F N    +L+
Sbjct: 801 VNDRI-----SNLQ---ELSNLILKYIPDCRLAIGHGRMQPEELEQIIMGFMNHDYDVLL 852

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNS 604
           +TT+IE GID+ +A+ III +A  FGL+ LHQ+RGRVGR    + C LL  P   L +++
Sbjct: 853 STTIIESGIDISNANTIIINDAHRFGLSDLHQMRGRVGRSNRKAFCYLLAPPKSLLKQDA 912

Query: 605 YTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM 641
             RL  L+   +   GF ++ +DL  R  G +LG +QSG 
Sbjct: 913 RRRLEALETFSELGSGFSLSMQDLDIRGAGNLLGSEQSGF 952


>gi|207091918|ref|ZP_03239705.1| transcription-repair coupling factor (trcF) [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 911

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/401 (33%), Positives = 217/401 (54%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+      G Q+ ++ P 
Sbjct: 395 FEYTSDQEKAIAEISRDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCTFLNGFQSALVVPT 454

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N  + V  +  +   + + K L+ +  G   +++GTHA+     
Sbjct: 455 TLLAHQHFETLRVRFENFGVKVARL--DRYASEKNKLLKAVELGLIDVLVGTHAIL--GA 510

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 511 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKT 570

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 571 PPTDRKPSRTFLKEKNDELLKEIIHR---ELRRNGQIFYIHNHIASILKVKTKLEELIPK 627

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G+ ++L+ T+++E GI + +A+ III+
Sbjct: 628 LK---------IAILHSQINANESEEIMLEFAKGSYQVLLCTSIVESGIHLPNANTIIID 678

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  +A
Sbjct: 679 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESVA 738

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 739 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTHMLEDAIYELS 779


>gi|239981759|ref|ZP_04704283.1| transcriptional-repair coupling factor [Streptomyces albus J1074]
 gi|291453617|ref|ZP_06593007.1| transcriptional-repair coupling factor [Streptomyces albus J1074]
 gi|291356566|gb|EFE83468.1| transcriptional-repair coupling factor [Streptomyces albus J1074]
          Length = 1177

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 153/436 (35%), Positives = 238/436 (54%), Gaps = 33/436 (7%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA--QKILRN-IPFSPT 274
           +WT + AR + A  E+ A  I L      +   +  P +  G+    Q+ L +  P+  T
Sbjct: 576 DWTKTKARAKKAVKEIAADLIKL------YSARMAAPGHAFGQDTPWQRELEDAFPYMET 629

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q S I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L 
Sbjct: 630 PDQLSTIAEVKDDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLV 689

Query: 335 QQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           QQH+  F ++Y Q   + V  ++     A  +  LE +  G   I+IGTH LF    ++ 
Sbjct: 690 QQHFGTFSERYAQ-FPVNVRALSRFQSDAEAKATLEGLRDGSVDIVIGTHRLFSSETKFK 748

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P 
Sbjct: 749 DLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPE 808

Query: 454 GRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNS 509
            R P+ T + P +  +I   I R   +L EG + ++I  ++E  +K  +  R +V     
Sbjct: 809 ERHPVLTFVGPYDPKQIGAAIRR--ELLREG-QVFYIHNRVESIDKAAARLREIVPE--- 862

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                 + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  +
Sbjct: 863 ------ARIATAHGKMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGD 916

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEED 624
           +FGL+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +D
Sbjct: 917 NFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKD 976

Query: 625 LKQRKEGEILGIKQSG 640
           L+ R  G +LG +QSG
Sbjct: 977 LEIRGAGNLLGGEQSG 992


>gi|256372365|ref|YP_003110189.1| transcription-repair coupling factor [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008949|gb|ACU54516.1| transcription-repair coupling factor [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 1131

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 214/379 (56%), Gaps = 19/379 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ QE  I ++L D+++   M R++ GDVG GKT +AL A  A    G Q +++AP
Sbjct: 580 PYELTRDQERTIAEVLADLAKPVPMDRLVCGDVGFGKTEIALRAAFAVASEGRQVLVLAP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE-RIAHGQAHIIIGTHALFQD 388
             +LA QH E  ++  + T I V +++  +  A    ++   +A G+  + I THA    
Sbjct: 640 TTLLAAQHAEVFRERFEGTPIRVGMLS-RLSTAREAASIRAELASGELDVCIATHAALGA 698

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           S ++ +L L+++DE+ RFGV+ + +L +      VL+++ATPIPR+L L+ +G  D+S +
Sbjct: 699 STRFARLGLLVIDEEQRFGVRHKEQLKEAFPGVDVLVLSATPIPRSLELSLVGIRDLSVL 758

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
              P  R PI T + P +   + E I R   +L EG + +++  ++ +  E++ R V + 
Sbjct: 759 RTAPVDRHPILTHVGPFDPAVVTEAIRR--ELLREG-QVFFVHNRVRD-IEASARLVADL 814

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                    + + + HG++     E  M  F +G   +L+ATT++E GID+  A+ +I++
Sbjct: 815 VPE------ARVLVAHGQLPPAALERTMAQFWHGEADVLVATTIVENGIDLARANTLIVD 868

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL-SVLKNTE--DGFLIA 621
            AE  GLAQLHQLRGRVGR    +   LL      +S  +  RL +V +NT+   G+ IA
Sbjct: 869 RAEQLGLAQLHQLRGRVGRSGRQAYAYLLTSTTGGISDIALERLRTVAENTDLGAGYRIA 928

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G +LG++QSG
Sbjct: 929 MRDLELRGAGTVLGMRQSG 947


>gi|297200238|ref|ZP_06917635.1| transcription-repair coupling factor [Streptomyces sviceus ATCC
            29083]
 gi|197717008|gb|EDY61042.1| transcription-repair coupling factor [Streptomyces sviceus ATCC
            29083]
          Length = 1190

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 148/433 (34%), Positives = 237/433 (54%), Gaps = 27/433 (6%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 589  DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHTFGPDTPWQRELEDAFPYAETPDQ 645

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 646  LTTIAEVKEDMEKSVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 705

Query: 338  Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            +  F ++Y+Q   ++V+ ++        +  LE +  G   ++IGTH LF    ++  L 
Sbjct: 706  FGTFSERYSQFP-VVVKALSRFQTDTEAKATLEGLREGSVDVVIGTHRLFSSETKFKDLG 764

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 765  LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 824

Query: 457  PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
            P+ T + P    +I   I R   +L EG + ++I  ++E  ++  S  R +V        
Sbjct: 825  PVLTFVGPYEEKQIGAAIRR--ELLREG-QVFYIHNRVESIDRAASRLREIVPE------ 875

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 876  ---ARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFG 932

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
            L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 933  LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 992

Query: 628  RKEGEILGIKQSG 640
            R  G +LG +QSG
Sbjct: 993  RGAGNLLGGEQSG 1005


>gi|254780073|ref|YP_003058180.1| Transcription-repair coupling factor [Helicobacter pylori B38]
 gi|254001986|emb|CAX30245.1| Transcription-repair coupling factor [Helicobacter pylori B38]
          Length = 995

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 135/401 (33%), Positives = 216/401 (53%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +  +  V++   +   + + K L+ +  GQ   +IGTHA+     
Sbjct: 543 TLLAHQHFETLR--ARFEKFGVKVARLDRYVSEKNKLLKAVELGQVDALIGTHAIL--GT 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKT 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++   +++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIYR---ELRRNGQIFYIHNHIASISKVKTKLENLIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++    E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 LK---------IAILHSQINANKSEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|108864447|gb|ABA94063.2| CarD-like transcriptional regulator family protein, expressed
           [Oryza sativa Japonica Group]
          Length = 803

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/418 (30%), Positives = 226/418 (54%), Gaps = 42/418 (10%)

Query: 227 RLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +LA  +++   + L L R +Q +     P+ ++   A+      P+ PT  Q  A  D+ 
Sbjct: 237 KLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAE-----FPYEPTPDQNQAFIDVD 291

Query: 286 QDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-KK 343
           +D++++   M R++ GDVG GKT VA+ A+   + AG QA+++AP  ILA+QHY+ + ++
Sbjct: 292 KDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSER 351

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
           ++    I V + +G   +  + + + +I +G  HII+GTHA+  + + Y  L L++VDE+
Sbjct: 352 FSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEE 411

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            +FGVQQ+ K+     +  VL ++ATPIPRTL L   G  D S ++  P  R  ++T + 
Sbjct: 412 QKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVS 471

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522
             ++ +  +  +K  L+ G + +++ P+I        +++ +    L +      +A+ H
Sbjct: 472 GFSK-ERALSAIKFELARGGQVFYVVPRI--------KAIDDVLQFLKDSLPDVPMAVAH 522

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+    + +  M+ F  G  K+L+ T +IE GID+ +A+ ++++ AE FGLAQL+Q   R
Sbjct: 523 GKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQ--DR 580

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           +G  EE        H  L +              GF +AE+D+  R  G + G +QSG
Sbjct: 581 LGAIEE--------HSDLGQ--------------GFHVAEKDMGIRGFGSLFGEQQSG 616


>gi|289422646|ref|ZP_06424487.1| transcription-repair coupling factor [Peptostreptococcus anaerobius
           653-L]
 gi|289156946|gb|EFD05570.1| transcription-repair coupling factor [Peptostreptococcus anaerobius
           653-L]
          Length = 1133

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 204/381 (53%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+  +DM  +  M R++ GDVG GKT VA+ A+  AV    Q  ++ P
Sbjct: 614 PYQETDDQLKAIKETKKDMESQKAMDRLICGDVGYGKTEVAIRAIFKAVMDNKQVAVLVP 673

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQH+    +  ++  I VE+++       +R+ +     G   ++IGTH +    
Sbjct: 674 TTILAQQHFNTFTERFEDYPIRVEVLSRFKTPKQQREIIADAKKGLVDVLIGTHRIVSKD 733

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I   +L L++VDE+ RFGV+ +  L +      VL ++ATPIPRTL ++  G  D+S I 
Sbjct: 734 IAMPRLGLIVVDEEQRFGVKHKEALKKLRVDVDVLTLSATPIPRTLHMSLSGIRDMSIIE 793

Query: 450 EKPAGRKPIKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
           E P  R P+ T +         DE+       L+ G + +++  ++E  E   S  + +V
Sbjct: 794 EPPQERYPVMTYVTEAKESIIQDEIYRE----LARGGQVFFVYNRVEGIETIASKIKKLV 849

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              N         I + HGRM+    E+ + SF +    +L+ TT+IE G+D+ +A+ +I
Sbjct: 850 PEAN---------IGVAHGRMTSSQLENTVLSFLSKEFDVLVCTTIIETGMDIANANTMI 900

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFL 619
           I +A+  GL+QL+QLRGRVGR  +     L+Y  +  +S+ S  RL  +K  TE   GF 
Sbjct: 901 IYDADKMGLSQLYQLRGRVGRSNKQGYAYLMYERNKVISEVSEKRLKAIKEFTEFGSGFK 960

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  G+++G +Q G
Sbjct: 961 VAMRDLEIRGAGDVMGSQQHG 981


>gi|258405811|ref|YP_003198553.1| transcription-repair coupling factor [Desulfohalobium retbaense DSM
           5692]
 gi|257798038|gb|ACV68975.1| transcription-repair coupling factor [Desulfohalobium retbaense DSM
           5692]
          Length = 1153

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/414 (31%), Positives = 220/414 (53%), Gaps = 21/414 (5%)

Query: 237 QIALLLMRKQFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           QIA  L+R    + +  G   +   ++ ++   +  F+ T  QE  I D+L+DM     M
Sbjct: 571 QIAHELVRMYAYRRVAKGFAYSAADELYREFEASFGFAETPDQEKVISDVLEDMDSPEPM 630

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT +A+ A   AV    Q  ++ P  +LA+QHY+  ++  +  ++ V +
Sbjct: 631 DRLVCGDVGFGKTEIAMRAAFRAVADSKQVALLCPTTVLAEQHYQNFRQRMEPFEVRVGL 690

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           ++  +P+A +RK LE    G+  I+IGTH L    ++  +  L+I+DE+ RFGV+ + KL
Sbjct: 691 LSRFVPKAQQRKTLEAAGRGEIDILIGTHRLLSQDVRLPQQSLLILDEEQRFGVKHKEKL 750

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII--PINRIDEVI 472
            +      VL +TATPIPRTL L+  G   +S I   P  RK +++ +I     R+ E++
Sbjct: 751 KEIRKTLDVLTLTATPIPRTLQLSLSGVRSLSVIETPPPERKAVESSLIEREPGRLQEIL 810

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           +R    +  G + +++  ++  +  +  R +V+     H    + + + HG+M++   E 
Sbjct: 811 QR---EVDRGGQVFFVHNRV--RGLAEVRDMVQ-----HLVPEARVGMAHGQMAERRLEE 860

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M  F +G   +L+ T +IE G+D   A+ +I++ A  FGL QL+QLRGRVGR +  +  
Sbjct: 861 SMHRFWHGELDILVCTAIIESGLDFPRANTLIVDQAHMFGLGQLYQLRGRVGRSKRQAYA 920

Query: 593 ILLYHPPLSK---NSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
             +  P L     ++  RL  +   +    G  +A  DL+ R  G +LG  QSG
Sbjct: 921 YFVV-PSLDNLPADARKRLQAILEADYLGAGIQVAMRDLQLRGAGNLLGESQSG 973


>gi|188528343|ref|YP_001911030.1| transcription-repair coupling factor [Helicobacter pylori Shi470]
 gi|188144583|gb|ACD49000.1| transcription-repair coupling factor [Helicobacter pylori Shi470]
          Length = 999

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/401 (33%), Positives = 216/401 (53%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+      G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCMFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  G   +++GTHA+     
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVELGLIDVLVGTHAIL--GA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKI 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIHR---ELRRNGQIFYIHNHIASISKVKTKLEELIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 LK---------IAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|312113596|ref|YP_004011192.1| transcription-repair coupling factor [Rhodomicrobium vannielii ATCC
            17100]
 gi|311218725|gb|ADP70093.1| transcription-repair coupling factor [Rhodomicrobium vannielii ATCC
            17100]
          Length = 1249

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/397 (33%), Positives = 208/397 (52%), Gaps = 19/397 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q ++I+ +  D+++   M R++ GDVG GKT VAL A   AV  G Q  ++ P
Sbjct: 630  PYEETDDQLASIEAVADDLAKGRPMDRLVCGDVGFGKTEVALRAAFIAVMEGKQVAVVVP 689

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QHY+      Q   + V   +  +         E +  GQ  I++GTHAL   S
Sbjct: 690  TTLLARQHYQTFVNRFQGFPVKVAQASRLVTPKEMTLTREGLKAGQVDIVVGTHALLAKS 749

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I +  L L+IVDE+  FGV  + +L       HVL +TATPIPRTL L   G  ++S I 
Sbjct: 750  IGFKDLGLLIVDEEQHFGVAHKERLKNLREEVHVLTLTATPIPRTLQLALTGVREMSVIA 809

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--SNFRSVVERF 507
              P  R  ++T I P + +  + E L      G +++++ P+I +  E  +  R  V   
Sbjct: 810  TPPVDRLAVRTFITPFDPV-TLREALLRERYRGGQSFYVVPRISDLDEVATFLREQVPEI 868

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              +           HG+M+    E +M +F +    +L++TT++E G+D+ +A+ +I+  
Sbjct: 869  RFMQ---------AHGQMAPTQLEDIMSAFYDKEFDVLLSTTIVESGLDIPNANTLIVHR 919

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622
            A+ FGLAQL+QLRGRVGR +  +  +    P   ++  +  RL VL + +    GF +A 
Sbjct: 920  ADMFGLAQLYQLRGRVGRSKTRAYAMFTIPPNGKITPQAEKRLKVLHSLDSLGAGFTLAS 979

Query: 623  EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             DL  R  G +LG +QSG  K +    EL+ S+LE A
Sbjct: 980  HDLDLRGAGNLLGDEQSGHIKEV--GYELYQSMLEEA 1014


>gi|317181205|dbj|BAJ58991.1| DNA recombinase [Helicobacter pylori F32]
          Length = 621

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 188/619 (30%), Positives = 292/619 (47%), Gaps = 72/619 (11%)

Query: 44  LLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           LL Y P  + D    +H+   +S + E  I+    Y      F   KR  YK L      
Sbjct: 20  LLIYTPKGYKDLNLLKHFELGLSGVLEVDILDKRNYAKVLKIFAYSKRF-YKNLE----- 73

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
               L F+  +    N F  G  + + GK+++             F+ +  +N P I   
Sbjct: 74  ----LVFFNYSAFHYNQFKTGESLFIYGKLEQSS-----------FNQAYIINTPKILTE 118

Query: 160 YSLPTGLSVDLFKKI-----IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           +    G    +FKK+     I E L +L  L E ++K+ +++     + E F     P  
Sbjct: 119 F----GKISLIFKKVKNHKKIQENLQKLISL-ENLKKEGIKENIAHLLLEIF--FPTPHF 171

Query: 215 AKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            KDFE    + S     L Y E+L     L   + QF  +I  P N E    +  + ++P
Sbjct: 172 VKDFETHKNFPSQHLNALKYIEMLFYMKNLERKKLQFSAKIACPNNSER--LKAFITSLP 229

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP 
Sbjct: 230 FKLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLMAPT 287

Query: 331 GILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            ILA+Q Y    +F+  Y +     VE++ G   +       E I H    ++IGT AL 
Sbjct: 288 SILAKQLYNEALKFLPPYFE-----VELLLGGSHKKRSNHLFETITH----VVIGTQALL 338

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGD 442
            D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L     
Sbjct: 339 FDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAF 398

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +  + I E P   K I+T+++       V+E++   + +  +   + P + E ++  + S
Sbjct: 399 VKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIVKNHQVIVVYPLVNESEKIPYLS 457

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E  +   + F   +    G+  D +KE V++ F+  +  +L+ATT+IEVGI +   S+
Sbjct: 458 LSEGASFWQKRF-KKVYTTSGQ--DKNKEEVIEEFRE-SGSILLATTLIEVGISLPRLSV 513

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           +++   E  GLA LHQLRGRV R      C L       +    RL    +  DGF IAE
Sbjct: 514 MVVLAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFKIAE 569

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DL+ RK G++L G +QSG
Sbjct: 570 LDLEYRKSGDLLQGGEQSG 588


>gi|225016418|ref|ZP_03705610.1| hypothetical protein CLOSTMETH_00321 [Clostridium methylpentosum
           DSM 5476]
 gi|224950803|gb|EEG32012.1| hypothetical protein CLOSTMETH_00321 [Clostridium methylpentosum
           DSM 5476]
          Length = 1152

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/428 (31%), Positives = 218/428 (50%), Gaps = 17/428 (3%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  + +R + A  E+    I L   R + K   G   + + +  ++   +  +  T+ Q
Sbjct: 564 EWNKTRSRVKKAVAEMADELIRLYAERAKTK---GYAFSKDNEWQREFEDHFEYEETEDQ 620

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              I++I  DM     M R+L GDVG GKT VAL A    V    Q  I+ P  ILA QH
Sbjct: 621 LRCIEEIKADMESDRPMERLLCGDVGFGKTEVALRAAFKCVLDSKQCAILCPTTILAWQH 680

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+       N  + +E+++       +++ L+++  GQ  IIIGTH L Q  + +  L L
Sbjct: 681 YQTALARIGNFPVNIELLSRFRTPKEQKQVLQKLRTGQVDIIIGTHRLVQKDVAFSDLGL 740

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            I+DE+ RFGV  + +  +      VL ++ATPIPRTL +   G  D+S I + P  R P
Sbjct: 741 AIIDEEQRFGVTHKERFKEMFRGVDVLTLSATPIPRTLNMAMSGIRDMSVIEQAPQDRHP 800

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           I+T +I  +    + + +K  L    + Y+I  ++E     + +S   + + L     + 
Sbjct: 801 IQTYVIE-HDYGVIADAIKRELRRDGQVYYIHNRVE-----SIQSCAAQISKLVPD--AR 852

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I I HG+M + +   +          +L+ TT+IE G+DV + + +IIE+A++ GL+QL+
Sbjct: 853 IGIAHGKMGENELSRIWQQLMEHEIDILVCTTIIETGVDVSNCNTLIIEDADNMGLSQLY 912

Query: 578 QLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGRVGR +  +S    +     L++ +  RLS ++       GF IA  DL+ R  G 
Sbjct: 913 QLRGRVGRSKRRASAYFTFRRGKVLTEIASKRLSAIREFTKFGSGFRIALRDLEIRGAGS 972

Query: 633 ILGIKQSG 640
           ILG +Q G
Sbjct: 973 ILGERQHG 980


>gi|313895853|ref|ZP_07829407.1| helicase C-terminal domain protein [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975278|gb|EFR40739.1| helicase C-terminal domain protein [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 276

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/229 (44%), Positives = 144/229 (62%), Gaps = 4/229 (1%)

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL+MTATPIPRT+ LT  GD+D+S+I   P GR+ I+T +       ++   ++  + 
Sbjct: 3   PDVLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRRAIRTFLRTDAARAKIYAFVRKEIE 62

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFK 538
            G++AY +CP+IE  +E++  S  E ++ L       I   ++HGRM   DK++VM  F 
Sbjct: 63  SGRQAYVVCPRIEASEENDLPSAEEVYDELSRGVFRGIRCGLLHGRMKAADKDAVMRDFY 122

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               KLL++TTVIEVG++V +ASI+++E+AE FGLAQLHQLRGRVGRG   S CIL+   
Sbjct: 123 EDRIKLLVSTTVIEVGVNVPNASILVVEHAERFGLAQLHQLRGRVGRGAYASYCILIAGA 182

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S     RL V++ T DGF +AEEDL+ R  G+  G  Q G+    IA
Sbjct: 183 --SAAQAERLKVIEQTSDGFRLAEEDLRLRGPGQFFGAMQHGLGDLKIA 229


>gi|317011784|gb|ADU85531.1| transcription-repair coupling factor [Helicobacter pylori
           SouthAfrica7]
          Length = 999

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/401 (33%), Positives = 214/401 (53%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N  + V  +   + +  + K L+ +  G    ++GTHA+     
Sbjct: 543 TLLAHQHFETLRARFENFGVKVARLDRYVSE--KNKLLKAVESGLVDALVGTHAIL--GA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L++VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKT 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K +    +++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIHR---ELRRNGQIFYIHNHIASISKVKKELENLIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 LK---------IAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      LS  +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLSDQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|313832012|gb|EFS69726.1| transcription-repair coupling factor [Propionibacterium acnes
            HL007PA1]
          Length = 1208

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/377 (32%), Positives = 197/377 (52%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T  Q +   D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 649  YVETPDQLTTFADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 708

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +L QQH++   +      + V  ++        R+ LE +  G   +++GTH L    +
Sbjct: 709  TLLVQQHFQTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEV 768

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I  
Sbjct: 769  EFKDLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIAT 828

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R  + T   P +   +V+  ++  L+   + ++I  +++  EK  +  R +V    
Sbjct: 829  PPEERHSVLTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPE-- 885

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + I   HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A
Sbjct: 886  -------ARIVTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRA 938

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
            +  GL+QLHQLRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +
Sbjct: 939  DLMGLSQLHQLRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMK 998

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 999  DLEIRGAGNLLGGEQSG 1015


>gi|208435387|ref|YP_002267053.1| DNA recombinase [Helicobacter pylori G27]
 gi|208433316|gb|ACI28187.1| DNA recombinase [Helicobacter pylori G27]
          Length = 623

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 150/442 (33%), Positives = 226/442 (51%), Gaps = 35/442 (7%)

Query: 212 PRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           P   KDFE    + S     L Y E+L     L   + QF  +I  P N E       + 
Sbjct: 169 PHFVKDFETNKNFPSQHLNALKYIEMLFYMKNLERKKLQFNAKIACPNNSER--LDNFIA 226

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF  T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++M
Sbjct: 227 SLPFKLTCDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLM 284

Query: 328 APIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AP  ILA+Q Y    +F+  Y +     VE++ G + +       E I H    +IIGT 
Sbjct: 285 APTSILAKQLYNEALKFLPPYFE-----VELLLGGIRKKRSNHLFETITH----VIIGTQ 335

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTS 439
           AL  D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L  
Sbjct: 336 ALLFDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAK 395

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  
Sbjct: 396 SAFVKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIP 454

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           + S+ E  +   + F   +    G+  D +KE V++ F+  +  +L+ATT+IEVGI +  
Sbjct: 455 YLSLSEGASFWQKRF-KKVYTTSGQ--DKNKEEVIEEFRE-SGSILLATTLIEVGISLPR 510

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            S+++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF 
Sbjct: 511 LSVMVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFK 566

Query: 620 IAEEDLKQRKEGEIL-GIKQSG 640
           IAE DL+ RK G++L G +QSG
Sbjct: 567 IAELDLEYRKSGDLLQGGEQSG 588


>gi|291545188|emb|CBL18297.1| transcription-repair coupling factor [Ruminococcus sp. 18P13]
          Length = 1156

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 135/416 (32%), Positives = 214/416 (51%), Gaps = 22/416 (5%)

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           DEL+A      L  K+ K E G     + +I  +     P+  T  Q   I DI  DM +
Sbjct: 577 DELIA------LYAKREKAE-GFAFLPDDEIQAEFEERFPYVETDDQLQCIADIKADMQK 629

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            + M R+L GDVG GKT VA+ A    V +G Q  I+ P  +LA+QHY+   +  +   +
Sbjct: 630 PHPMDRLLCGDVGFGKTEVAMRAALKCVLSGKQCAILVPTTVLARQHYQTALRRFEQMPV 689

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            VE+++       + + L +++ G+  I+IGTH L Q  + +  L L I+DE+ RFGV  
Sbjct: 690 NVELLSRARNPKQQAEILRKLSTGRIDILIGTHRLIQKDVIFKDLGLAIIDEEQRFGVAH 749

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           + K  +      VL ++ATPIPRTL +   G  D+S I E P  R P+++ ++  +  D 
Sbjct: 750 KEKFKESFAGVDVLTLSATPIPRTLNMAMSGIRDMSVIEEPPQDRYPVQSYVVEYS--DG 807

Query: 471 VI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           V+ + L   L  G +AY++  ++E        +  +R   L     + IA  HG+M++  
Sbjct: 808 VVAQALSRELKRGGQAYYLHNRVE-----TIAACADRLQRLLPD--ARIAYAHGQMTEEA 860

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
              +     +    +L+ TT+IE G+DV + + +IIE+A+  GL+QL+QLRGRVGR    
Sbjct: 861 MSDIWRQLVDHEIDILVCTTIIETGVDVPNVNTLIIEDADRLGLSQLYQLRGRVGRSNRR 920

Query: 590 SSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           +     +     L++ +  RL+ ++       GF IA  DL+ R  G IL  KQ G
Sbjct: 921 AYAYFTFRREKVLTEVATKRLNAMREFTQFGSGFRIALRDLEIRGAGSILSGKQHG 976


>gi|255037444|ref|YP_003088065.1| transcription-repair coupling factor [Dyadobacter fermentans DSM
           18053]
 gi|254950200|gb|ACT94900.1| transcription-repair coupling factor [Dyadobacter fermentans DSM
           18053]
          Length = 1115

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 138/456 (30%), Positives = 226/456 (49%), Gaps = 35/456 (7%)

Query: 209 IHNPRKAKDF---EWTSPARERLAYDELLAGQ--------------IALLLMRKQFKKEI 251
           +HN  K   +   E T PA  +L   E  A +              IAL   R+Q     
Sbjct: 483 VHNLHKIAKYTGKEGTPPAMSKLGSGEWEAKKSKVKKQLKDIAHELIALYAKRRQAP--- 539

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G P + +  +  ++  +  +  T  Q +A  ++  DM + + M R++ GDVG GKT +A+
Sbjct: 540 GFPFSKDNYLQVELESSFIYEDTPDQATATANVKDDMEKGHPMDRLVCGDVGFGKTEIAI 599

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV    Q  ++ P  ILA QHY+   +   +    V  I         ++ L+  
Sbjct: 600 RAAFKAVCDSKQVAVLVPTTILAMQHYKTFSERLADFPARVGYINRFKSAKEIKQTLKEA 659

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G+  I+IGTH +    +++  L L++VDE+ +FGV+ + +L +      VL +TATPI
Sbjct: 660 EEGKIDILIGTHRILNKDVKFKDLGLLVVDEEQKFGVKAKDRLKEMRVNVDVLTLTATPI 719

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICP 490
           PRTL  + +G  D+S I   P  R+P+ T +   +  +E I + +   +  G + +++  
Sbjct: 720 PRTLHFSLMGARDLSVIATPPPNRQPVTTEVHTFS--EEFIRDAISFEVQRGGQVFFVHN 777

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           ++ + +  +  +++ R           I + HG+M     E VM +F  G   +L++T +
Sbjct: 778 RVNDIE--SIANIILRLVP-----DVRIGVAHGQMEGDKLEKVMMNFIEGEYDILVSTNI 830

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRL 608
           IE GID+ +A+ III +A  FGL+ LHQ+RGRVGR    + C LL      L+ +S  RL
Sbjct: 831 IESGIDIANANTIIINSAHMFGLSDLHQMRGRVGRSNRKAFCYLLTPSASTLASDSRKRL 890

Query: 609 SVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
             L+   +  DGF +A  DL  R  G +LG +QSG 
Sbjct: 891 QTLEEFSDLGDGFKVAMRDLDIRGAGNLLGAEQSGF 926


>gi|315501932|ref|YP_004080819.1| transcription-repair coupling factor [Micromonospora sp. L5]
 gi|315408551|gb|ADU06668.1| transcription-repair coupling factor [Micromonospora sp. L5]
          Length = 1218

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 149/431 (34%), Positives = 233/431 (54%), Gaps = 23/431 (5%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W  S AR R A  E+ A  I L   RK  K   G     +    +++    P+  T  Q
Sbjct: 606  DWQKSKARARKAVREIAAQLIQLYAARKASK---GHNFGPDTPWQRELEDAFPWQETPDQ 662

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +AI+++ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 663  LAAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 722

Query: 338  YE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            Y  F ++ +Q    I ++     P+    + LE +A G   I+IGTH L Q + ++  L 
Sbjct: 723  YNTFAERMSQFPVSIRQLSRFQTPK-ESEQTLEMVAAGTVDIVIGTHRLLQAATRFKSLG 781

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            LVI+DE+ RFGV+ +  L     +  VL M+ATPIPRTL +   G  ++S I   P  R 
Sbjct: 782  LVIIDEEQRFGVEHKEHLKTLRASVDVLAMSATPIPRTLEMAITGIREMSTIATPPEERH 841

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            P+ T +   +         + +L +G + +++  ++E  EK     R +V          
Sbjct: 842  PVLTFVGAYDDRQVAASIHRELLRDG-QVFYLHNRVESIEKTARRLRELVPE-------- 892

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + +A+ HG+M +   E VM  F      +L+ TT++E GID+ +A+ +I+E A+  GLA
Sbjct: 893  -ARVAVAHGQMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLA 951

Query: 575  QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRK 629
            QLHQ+RGRVGRG E +    LY P  PL++N++ RL+ + ++TE   G  +A +DL+ R 
Sbjct: 952  QLHQIRGRVGRGRERAYAYFLYPPEKPLTENAHERLATIAQHTELGAGMYVAMKDLEIRG 1011

Query: 630  EGEILGIKQSG 640
             G +LG +QSG
Sbjct: 1012 AGNLLGGEQSG 1022


>gi|111225581|ref|YP_716375.1| transcription-repair coupling factor [Frankia alni ACN14a]
 gi|111153113|emb|CAJ64860.1| Transcription-repair coupling factor (TRCF) [Frankia alni ACN14a]
          Length = 1246

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/378 (34%), Positives = 211/378 (55%), Gaps = 17/378 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF  T  Q +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 690  PFRETPDQLAAIDEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 749

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L QQH++   +      +IV+ ++       ++   + +A G   ++IGTH L    
Sbjct: 750  TTLLVQQHFQTFSERYAAFPVIVKAMSRFNSAGEQKAVADGLADGTVDVVIGTHRLLSGE 809

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
             ++  L LVIVDE+ RFGV+ + +L +  TA  VL M+ATPIPRTL ++  G  ++S I 
Sbjct: 810  NRFKDLGLVIVDEEQRFGVEHKEQLKKMRTAVDVLTMSATPIPRTLEMSITGIRELSTID 869

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
              P  R P+ T + P +         + +L EG + ++I  ++E  ++  +  R +V   
Sbjct: 870  TPPEERHPVLTSVAPYDTRQVAAAIRRELLREG-QVFFIHNRVESIDRAAARLRELVPE- 927

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                    + IA  HG+M++   E VM SF      +L+ TT++E G+D+ +A+ +++E 
Sbjct: 928  --------ARIATAHGQMNEDALEQVMVSFWEKKFDVLVCTTIVESGLDISNANTLVVER 979

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622
            A+ FGL+QLHQLRGRVGRG + +    LY P  PL++ ++ RL+ +    D   G  +A 
Sbjct: 980  ADVFGLSQLHQLRGRVGRGRDRAYAYFLYPPDKPLTETAHDRLATIAQHNDLGAGMAVAM 1039

Query: 623  EDLKQRKEGEILGIKQSG 640
            +DL+ R  G +LG +QSG
Sbjct: 1040 KDLEIRGAGNLLGGEQSG 1057


>gi|322379509|ref|ZP_08053874.1| DNA recombinase (recG) [Helicobacter suis HS1]
 gi|321148064|gb|EFX42599.1| DNA recombinase (recG) [Helicobacter suis HS1]
          Length = 613

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 212/384 (55%), Gaps = 25/384 (6%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+ L  +PF+ T  Q+ AI  I QD+  K    R++ GDVGSGKT+V L ++A A  +  
Sbjct: 227 QEFLDKLPFTLTPDQQKAISSIKQDLQGKVATKRLIMGDVGSGKTMVILASVALA--SPY 284

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           ++++MAP  ILA+Q Y    K+   +   + ++ G   +   +K+++     +A  I+GT
Sbjct: 285 KSLLMAPTSILAKQIYTEALKFLPPSIKPLLLLGGWSKKV--QKSID-----EATFIVGT 337

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLT 438
             L    +   ++ LV+ DEQHRFG +QR  L   AT     PH L  +ATPIPRTL + 
Sbjct: 338 TTLLYTPLDTSQVALVLSDEQHRFGTKQRHALQTLATHATGKPHYLQFSATPIPRTLAMM 397

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               +  S + +KP   K IKT II      +++E ++  + + ++   I P +EE ++ 
Sbjct: 398 GAKFVATSLLRDKPY-HKDIKTHIIGKKDFTKLLEHIQEQIVQDRQVAIIYPLVEESQKM 456

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF-KNGTCKLLIATTVIEVGIDV 557
           N+ S+ E      + F   + ++ G+  D  KE +M++F K G  ++L+ATT+IEVGI +
Sbjct: 457 NYLSLKEGAPYWQKRF-EKVCVVSGKHKD--KEEIMETFAKEG--QILLATTLIEVGISL 511

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              S III   E  GLA LHQLRGRV R      C L  H    +++ TRLS    T DG
Sbjct: 512 PKLSTIIIVGPERLGLATLHQLRGRVARLGGEGYCYLFTH----QSNNTRLSDFSQTLDG 567

Query: 618 FLIAEEDLKQRKEGEIL-GIKQSG 640
           F IA  DLK R  G++L G +QSG
Sbjct: 568 FEIANLDLKYRHSGDLLHGKEQSG 591


>gi|302865387|ref|YP_003834024.1| transcription-repair coupling factor [Micromonospora aurantiaca ATCC
            27029]
 gi|302568246|gb|ADL44448.1| transcription-repair coupling factor [Micromonospora aurantiaca ATCC
            27029]
          Length = 1218

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 149/431 (34%), Positives = 233/431 (54%), Gaps = 23/431 (5%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W  S AR R A  E+ A  I L   RK  K   G     +    +++    P+  T  Q
Sbjct: 606  DWQKSKARARKAVREIAAQLIQLYAARKASK---GHNFGPDTPWQRELEDAFPWQETPDQ 662

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +AI+++ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 663  LAAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 722

Query: 338  YE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            Y  F ++ +Q    I ++     P+    + LE +A G   I+IGTH L Q + ++  L 
Sbjct: 723  YNTFAERMSQFPVSIRQLSRFQTPK-ESEQTLEMVAAGTVDIVIGTHRLLQAATRFKSLG 781

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            LVI+DE+ RFGV+ +  L     +  VL M+ATPIPRTL +   G  ++S I   P  R 
Sbjct: 782  LVIIDEEQRFGVEHKEHLKTLRASVDVLAMSATPIPRTLEMAITGIREMSTIATPPEERH 841

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            P+ T +   +         + +L +G + +++  ++E  EK     R +V          
Sbjct: 842  PVLTFVGAYDDRQVAASIHRELLRDG-QVFYLHNRVESIEKTARRLRELVPE-------- 892

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + +A+ HG+M +   E VM  F      +L+ TT++E GID+ +A+ +I+E A+  GLA
Sbjct: 893  -ARVAVAHGQMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLA 951

Query: 575  QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRK 629
            QLHQ+RGRVGRG E +    LY P  PL++N++ RL+ + ++TE   G  +A +DL+ R 
Sbjct: 952  QLHQIRGRVGRGRERAYAYFLYPPEKPLTENAHERLATIAQHTELGAGMYVAMKDLEIRG 1011

Query: 630  EGEILGIKQSG 640
             G +LG +QSG
Sbjct: 1012 AGNLLGGEQSG 1022


>gi|304440475|ref|ZP_07400363.1| transcription-repair coupling factor [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371041|gb|EFM24659.1| transcription-repair coupling factor [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 1148

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/377 (35%), Positives = 206/377 (54%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T+ Q +AIK+I +DM     M R+L  DVG GKT VA+ A   AV  G Q  ++ P 
Sbjct: 611 YEETEGQLNAIKEIKEDMESPTPMDRLLCADVGYGKTEVAIRAAFKAVMDGKQVAVLVPT 670

Query: 331 GILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
            ILAQQHY  F++++ ++  + + + +    +    K ++ +  G   I IGTH L    
Sbjct: 671 TILAQQHYNTFVERF-KDFPVSISVFSRFRTKKEIDKDIDDLKKGFIDIAIGTHRLLSKD 729

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+IVDE+ RFGV+ +  L     +   L +TATPIPRTL ++ +G  D+S I 
Sbjct: 730 VKFKDLGLIIVDEEQRFGVRHKETLKLLKESVDSLTLTATPIPRTLQMSMIGIRDMSVIE 789

Query: 450 EKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           E P  R PI+T +   N  D +I E +   +  G + Y++  ++     SN   ++ +  
Sbjct: 790 EPPEERFPIQTYVTEEN--DMLIREAILKEIERGGQVYYVSNRV-----SNMEEILLKLK 842

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L    T  IA  +G+MS+   E  M SF N    +LI +T+IE G+DV +A+ +I+  +
Sbjct: 843 KLVPEATFGIA--NGQMSERVLEDTMLSFINQEIDVLICSTIIETGMDVPNANTMIVTES 900

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEE 623
              GL+QL+QLRGR+GR   ++     Y  +  +S+ +  RL  +K  TE   G+ IA  
Sbjct: 901 NRLGLSQLYQLRGRIGRSNRLAYVYFTYRKNTEISEIASKRLKSIKEFTEFGSGYKIAMR 960

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G ILG KQ G
Sbjct: 961 DLEIRGSGSILGEKQHG 977


>gi|322380295|ref|ZP_08054511.1| DNA recombinase RecG [Helicobacter suis HS5]
 gi|321147278|gb|EFX41962.1| DNA recombinase RecG [Helicobacter suis HS5]
          Length = 613

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 212/384 (55%), Gaps = 25/384 (6%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+ L  +PF+ T  Q+ AI  I QD+  K    R++ GDVGSGKT+V L ++A A  +  
Sbjct: 227 QEFLDKLPFTLTPDQQKAISSIKQDLQGKVATKRLIMGDVGSGKTMVILASVALA--SPY 284

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           ++++MAP  ILA+Q Y    K+   +   + ++ G   +   +K+++     +A  I+GT
Sbjct: 285 KSLLMAPTSILAKQIYTEALKFLPPSIKPLLLLGGWSKKV--QKSID-----EATFIVGT 337

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLT 438
             L    +   ++ LV+ DEQHRFG +QR  L   AT     PH L  +ATPIPRTL + 
Sbjct: 338 TTLLYTPLDTSQVALVLSDEQHRFGTKQRHALQTLATHATGKPHYLQFSATPIPRTLAMM 397

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               +  S + +KP   K IKT II      +++E ++  + + ++   I P +EE ++ 
Sbjct: 398 GAKFVATSLLRDKPY-HKDIKTHIIGKKDFTKLLEHIQEQIVQDRQVAIIYPLVEESQKM 456

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF-KNGTCKLLIATTVIEVGIDV 557
           N+ S+ E      + F   + ++ G+  D  KE +M++F K G  ++L+ATT+IEVGI +
Sbjct: 457 NYLSLKEGAPYWQKRF-EKVCVVSGKHKD--KEEIMETFAKEG--QILLATTLIEVGISL 511

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              S III   E  GLA LHQLRGRV R      C L  H    +++ TRLS    T DG
Sbjct: 512 PKLSTIIIVGPERLGLATLHQLRGRVARLGGEGYCYLFTH----QSNNTRLSDFSQTLDG 567

Query: 618 FLIAEEDLKQRKEGEIL-GIKQSG 640
           F IA  DLK R  G++L G +QSG
Sbjct: 568 FEIANLDLKYRHSGDLLHGKEQSG 591


>gi|229817916|ref|ZP_04448198.1| hypothetical protein BIFANG_03203 [Bifidobacterium angulatum DSM
            20098]
 gi|229784520|gb|EEP20634.1| hypothetical protein BIFANG_03203 [Bifidobacterium angulatum DSM
            20098]
          Length = 1198

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/384 (34%), Positives = 215/384 (55%), Gaps = 14/384 (3%)

Query: 263  QKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            QK L +  P+  T  Q + I D+  DM +   M R++ GDVG GKT +A+ A   AV+ G
Sbjct: 637  QKELEDAFPYQETADQLTTIDDVKADMEKPRPMDRLICGDVGFGKTEIAVRAAFKAVQDG 696

Query: 322  GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             Q  ++ P  +L QQHYE   +  +   + V  ++        ++ +E +A G   ++IG
Sbjct: 697  KQVAVLVPTTLLVQQHYETFTERYEGFPVNVAAMSRFQKPKEIKQTIEDLAAGTVDVVIG 756

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L    I++  L LVI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G
Sbjct: 757  THKLLNPKIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTG 816

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              ++S +   P  R P+ T +       +V   ++  L  G + +++  ++E     +  
Sbjct: 817  IREMSTLATPPEDRLPVLTYVGAYEDA-QVTAAVRRELLRGGQVFYLHNRVE-----DIA 870

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            SV ++ ++L     S + I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A+
Sbjct: 871  SVADKIHNLVPE--SHVGIAHGKMGEKQLDQVIRDFWHRDIDVLVCTTIIETGLDISNAN 928

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--D 616
             +I+++A+ FGL+QLHQLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    
Sbjct: 929  TLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPMTQQSHDRLATIAQNTALGS 988

Query: 617  GFLIAEEDLKQRKEGEILGIKQSG 640
            GF +A +DL+ R  G +LG +QSG
Sbjct: 989  GFDVAMKDLELRGTGNLLGDQQSG 1012


>gi|315653944|ref|ZP_07906860.1| transcriptional repair coupling factor [Lactobacillus iners ATCC
           55195]
 gi|315488640|gb|EFU78286.1| transcriptional repair coupling factor [Lactobacillus iners ATCC
           55195]
          Length = 1110

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 209/381 (54%), Gaps = 21/381 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P
Sbjct: 559 PYLETPDQIKAIKEIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVP 618

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY  + +  ++  + V ++     +    +    +++G+  I++GTH +    
Sbjct: 619 TTILAEQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRD 678

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S + 
Sbjct: 679 IKFKNLGLLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVME 738

Query: 450 EKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             PA R PI+T +     N + E   R    L+   + +++  +I+  ++K +    ++ 
Sbjct: 739 TPPANRYPIQTYVTEETPNIVREACLR---ELARNGQIFFLHNKIQDIDQKVAYLSQLIP 795

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++
Sbjct: 796 E---------ARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLV 846

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLI 620
           ENA+ +GL+QL+QLRGR+GR   ++    LY     L++ S  RL+ +++      GF I
Sbjct: 847 ENADTYGLSQLYQLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKI 906

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  DL  R  G ILG +Q G 
Sbjct: 907 AMRDLSIRGAGNILGKQQHGF 927


>gi|307638179|gb|ADN80629.1| ATP-dependent DNA helicase [Helicobacter pylori 908]
 gi|325996775|gb|ADZ52180.1| ATP-dependent DNA helicase [Helicobacter pylori 2018]
 gi|325998367|gb|ADZ50575.1| ATP-dependent DNA helicase [Helicobacter pylori 2017]
          Length = 628

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 149/442 (33%), Positives = 227/442 (51%), Gaps = 35/442 (7%)

Query: 212 PRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           P   KDFE    + S     L Y E+L     L   + QF  +I  P N E       + 
Sbjct: 174 PHFVKDFETNKNFPSQHLNALKYIEMLFYMKNLDRKKLQFNAKIACPNNSER--LDNFIA 231

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF  T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++M
Sbjct: 232 SLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLM 289

Query: 328 APIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AP  ILA+Q Y    +F+  Y +     VE++ G   +       E+I H    ++IGT 
Sbjct: 290 APTSILAKQLYHEALKFLPPYFE-----VELLLGGSHKKRSHCLFEKITH----VVIGTQ 340

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTS 439
           AL  D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L  
Sbjct: 341 ALLFDKRDLDEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAK 400

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  
Sbjct: 401 SAFVKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIP 459

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           + S+ E  +   + F  ++    G+  D +KE V++ F+     +L+ATT+IEVGI +  
Sbjct: 460 YLSLSEGASFWQKRF-KNVYTTSGQ--DKNKEEVIEEFRE-LGSILLATTLIEVGISLPR 515

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            S+++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF 
Sbjct: 516 LSVMVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFK 571

Query: 620 IAEEDLKQRKEGEIL-GIKQSG 640
           IAE DL+ RK G++L G +QSG
Sbjct: 572 IAELDLQYRKSGDLLQGGEQSG 593


>gi|297380629|gb|ADI35516.1| ATP-dependent DNA helicase RecG [Helicobacter pylori v225d]
          Length = 621

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 189/619 (30%), Positives = 293/619 (47%), Gaps = 72/619 (11%)

Query: 44  LLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           LL Y P  + D    +H+   +S + E  I+    Y      F   KR  YK L      
Sbjct: 20  LLVYTPKGYKDLNLLKHFELGLSGVLEVDILDKRNYAKVLKIFAYSKRF-YKNLE----- 73

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
               L F+  +    N F  G  + + GK+++             F+ +  +N P I   
Sbjct: 74  ----LVFFNYSAFHHNQFKTGESLFIYGKLEQSS-----------FNQAYIINTPKILTE 118

Query: 160 YSLPTGLSVDLFKKI-----IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           +    G    +FKK+     I E L +L  L E ++K+ +++     + E F     P  
Sbjct: 119 F----GKISLIFKKVKNHKKIQENLQKLISL-ENLKKEGIKENIAHLLLEIF--FPTPYF 171

Query: 215 AKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            KDFE    ++S     L Y E+L     L   + QF  +I  P N E   A   + ++P
Sbjct: 172 VKDFETHKNFSSQHLNALKYIEMLFYMKNLERKKLQFGAKIACPNNSERLKA--FITSLP 229

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP 
Sbjct: 230 FKLTNDQQNAIKEIQSDLASPIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLMAPT 287

Query: 331 GILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            ILA+Q Y    +F+  Y +     VE++ G   +       E I H    ++IGT AL 
Sbjct: 288 SILAKQLYNEALKFLPPYFE-----VELLLGGSHKKRSNHLFETITH----VVIGTQALL 338

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGD 442
            D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L     
Sbjct: 339 FDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAF 398

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S
Sbjct: 399 VKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLS 457

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E  +   + F   +    G+  D +KE +++ F+     +L+ATT+IEVGI +   S+
Sbjct: 458 LSEGASFWQKRF-KKVYTTSGQ--DKNKEEMIEEFREFGS-ILLATTLIEVGISLPRLSV 513

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF IAE
Sbjct: 514 MVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFKIAE 569

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DL+ RK G++L G +QSG
Sbjct: 570 LDLEYRKSGDLLQGGEQSG 588


>gi|78776607|ref|YP_392922.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78497147|gb|ABB43687.1| ATP-dependent DNA helicase RecG [Sulfurimonas denitrificans DSM
           1251]
          Length = 604

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 156/431 (36%), Positives = 220/431 (51%), Gaps = 53/431 (12%)

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286
           L Y EL       + MR+  KK    P +++  K   + L+ +PF  T  Q  AI+DI  
Sbjct: 185 LKYTELF------VYMRELAKKRRYYPSLSLTCKSYDEWLQTLPFRLTNEQIKAIEDIRA 238

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           D  +     R++ GDVGSGKT+V  I  +A + +  ++++MAP  ILA Q YE  KKY  
Sbjct: 239 DFQKGLSARRMIVGDVGSGKTMV--ILASALMNSPNRSILMAPTTILANQIYEEAKKYLP 296

Query: 347 NTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL---ILVIVDE 402
              I +V     NM  +            +   IIGTHAL      Y +L    LV+VDE
Sbjct: 297 MMNIALVSSKNKNMDLS------------EYDFIIGTHALL-----YRELPIATLVMVDE 339

Query: 403 QHRFGVQQRLKLTQ-----------KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           QHRFG  QR  L +                H L  +ATPIPRT  +  +  ID+S IT  
Sbjct: 340 QHRFGTAQRNLLEKLVSSQNSSSKISDAKSHFLQFSATPIPRTQAMIEMAHIDVSLITST 399

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  +K IK+ +I  +   E++E +KV ++ G +   + P +E+ +   ++S+ E  +   
Sbjct: 400 PF-KKEIKSRVIHKSDFKELLEHIKVEIALGNQVLLVYPLVEQSEVLEYQSIDEARSFWE 458

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSF-KNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             FT+ + + HG+  D DKE V+  F K G   +LIATTV+EVGI +   S ++I  AE 
Sbjct: 459 ARFTN-VHVTHGK--DKDKEEVLREFDKQG--DILIATTVVEVGISLSRLSTVVIVGAER 513

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
            GL+ LHQLRGRV R      C L      ++N   RL    +T  GF IA  DLK RK 
Sbjct: 514 LGLSTLHQLRGRVSRTGLKGYCFLY----TNQNKSERLDKFVDTTSGFDIANLDLKFRKS 569

Query: 631 GEIL-GIKQSG 640
           G++L G  QSG
Sbjct: 570 GDLLRGHNQSG 580


>gi|312874973|ref|ZP_07734992.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2053A-b]
 gi|311089718|gb|EFQ48143.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2053A-b]
          Length = 1110

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 209/381 (54%), Gaps = 21/381 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P
Sbjct: 559 PYLETPDQIKAIKEIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVP 618

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY  + +  ++  + V ++     +    +    +++G+  I++GTH +    
Sbjct: 619 TTILAEQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRD 678

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S + 
Sbjct: 679 IKFKNLGLLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVME 738

Query: 450 EKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             PA R PI+T +     N + E   R    L+   + +++  +I+  ++K +    ++ 
Sbjct: 739 TPPANRYPIQTYVTEETPNIVREACLR---ELARNGQIFFLHNKIQDIDQKVAYLSQLIP 795

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++
Sbjct: 796 E---------ARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLV 846

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLI 620
           ENA+ +GL+QL+QLRGR+GR   ++    LY     L++ S  RL+ +++      GF I
Sbjct: 847 ENADTYGLSQLYQLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKI 906

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  DL  R  G ILG +Q G 
Sbjct: 907 AMRDLSIRGAGNILGKQQHGF 927


>gi|325913119|ref|ZP_08175489.1| transcription-repair coupling factor [Lactobacillus iners UPII
           60-B]
 gi|325477540|gb|EGC80682.1| transcription-repair coupling factor [Lactobacillus iners UPII
           60-B]
          Length = 1110

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 209/381 (54%), Gaps = 21/381 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P
Sbjct: 559 PYLETPDQIKAIKEIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVP 618

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY  + +  ++  + V ++     +    +    +++G+  I++GTH +    
Sbjct: 619 TTILAEQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRD 678

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S + 
Sbjct: 679 IKFKNLGLLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVME 738

Query: 450 EKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             PA R PI+T +     N + E   R    L+   + +++  +I+  ++K +    ++ 
Sbjct: 739 TPPANRYPIQTYVTEETPNIVREACLR---ELARNGQIFFLHNKIQDIDQKVAYLSQLIP 795

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++
Sbjct: 796 E---------ARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLV 846

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLI 620
           ENA+ +GL+QL+QLRGR+GR   ++    LY     L++ S  RL+ +++      GF I
Sbjct: 847 ENADTYGLSQLYQLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKI 906

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  DL  R  G ILG +Q G 
Sbjct: 907 AMRDLSIRGAGNILGKQQHGF 927


>gi|309809624|ref|ZP_07703481.1| transcription-repair coupling factor [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170105|gb|EFO72141.1| transcription-repair coupling factor [Lactobacillus iners SPIN
           2503V10-D]
          Length = 1110

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 209/381 (54%), Gaps = 21/381 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P
Sbjct: 559 PYLETPDQIKAIKEIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVP 618

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY  + +  ++  + V ++     +    +    +++G+  I++GTH +    
Sbjct: 619 TTILAEQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRD 678

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S + 
Sbjct: 679 IKFKNLGLLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVME 738

Query: 450 EKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             PA R PI+T +     N + E   R    L+   + +++  +I+  ++K +    ++ 
Sbjct: 739 TPPANRYPIQTYVTEETPNIVREACLR---ELARNGQIFFLHNKIQDIDQKVAYLSQLIP 795

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++
Sbjct: 796 E---------ARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLV 846

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLI 620
           ENA+ +GL+QL+QLRGR+GR   ++    LY     L++ S  RL+ +++      GF I
Sbjct: 847 ENADTYGLSQLYQLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKI 906

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  DL  R  G ILG +Q G 
Sbjct: 907 AMRDLSIRGAGNILGKQQHGF 927


>gi|315638822|ref|ZP_07893994.1| DNA helicase RecG [Campylobacter upsaliensis JV21]
 gi|315481040|gb|EFU71672.1| DNA helicase RecG [Campylobacter upsaliensis JV21]
          Length = 603

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 216/383 (56%), Gaps = 23/383 (6%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +K L+ +PFSPTK Q  AI DI +D+S++    R++ GDVG GKTLV L+A A +V    
Sbjct: 216 EKWLKTLPFSPTKDQIQAICDIREDLSKEVAKRRVIMGDVGCGKTLV-LLAAALSVYP-K 273

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA++MAP  ILA+Q +E  +K   +   I+  I G   + + ++ ++      AH+IIGT
Sbjct: 274 QALLMAPTSILAEQLFEEAQKLLPDFLQIL-FIKGGKKEKNLKEQIQ-----NAHLIIGT 327

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLT 438
           HAL  +  + +K +LV++DEQHRFG  QR K++  A+     PH +  +ATPIPRTL + 
Sbjct: 328 HALIYE--EGFKAVLVMIDEQHRFGSNQRQKISTLASKEGLNPHFIQFSATPIPRTLSMI 385

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               ++ S I + P  +K I T  +      ++  ++   +++  +   I P + E ++ 
Sbjct: 386 QSELLNFSFIKQMPF-KKEISTYCVQNEDFAKIKAKIDEEIAQNHQIIIIYPLVSESEKI 444

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            + S+ E      +H+  ++ + HG+  D +K+ ++  FK     +L++TTV+EVGI + 
Sbjct: 445 PYLSLDEAKFYWQKHY-KNVFVTHGK--DKEKDKILQEFKE-RGDILLSTTVVEVGISLP 500

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             S I+I  AE  GLA LHQLRGRVGR    S C L  +  L K    RL       DGF
Sbjct: 501 RLSTIVIVGAERLGLATLHQLRGRVGRVGLKSYCYL--YTKL-KEIPQRLIEFSKILDGF 557

Query: 619 LIAEEDLKQRKEGEIL-GIKQSG 640
            IAE DLK R  G++L G  Q G
Sbjct: 558 KIAELDLKNRLSGDLLDGYIQHG 580


>gi|256389420|ref|YP_003110984.1| transcription-repair coupling factor [Catenulispora acidiphila DSM
           44928]
 gi|256355646|gb|ACU69143.1| transcription-repair coupling factor [Catenulispora acidiphila DSM
           44928]
          Length = 1182

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 135/381 (35%), Positives = 216/381 (56%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 631 PYVETPDQLACIDEVKSDMEKPVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 690

Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             +L QQH+  F ++Y Q   + ++ ++         + L  +A G   ++IGTH L  +
Sbjct: 691 TTLLVQQHFSTFAERYAQFP-VTLKGLSRFQTDKEAAEVLRGVADGSVDVVIGTHRLLAN 749

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           S+++ +L LVIVDE+ RFGV+ + +L Q      VL M+ATPIPRTL +   G  ++S I
Sbjct: 750 SVKFKRLGLVIVDEEQRFGVEHKEQLKQARANVDVLTMSATPIPRTLEMAVTGIREMSTI 809

Query: 449 TEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
              P  R P+ T + P    +I   I R   +L EG +A++I  ++E  ++  S  R++V
Sbjct: 810 QTPPEERHPVLTFVGPYEERQISAAIRR--ELLREG-QAFYIHNRVESIDRAASRLRALV 866

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + IA  HG+M++   E ++  F N    +L+ TT++E GID+ +A+ +I
Sbjct: 867 PE---------ARIATAHGQMNEHVLEKLIVDFWNKEYDVLVCTTIVESGIDITNANTLI 917

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFL 619
           +E A++FGL+QLHQLRGRVGRG E +     Y P  PL++ ++ RL+ +    D   G  
Sbjct: 918 VERADNFGLSQLHQLRGRVGRGRERAYSYFTYPPEKPLTETAHERLATIAQHTDLGAGMY 977

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A +DL+ R  G +LG +QSG
Sbjct: 978 VAMKDLEIRGAGNLLGGEQSG 998


>gi|242310019|ref|ZP_04809174.1| ATP-dependent DNA helicase [Helicobacter pullorum MIT 98-5489]
 gi|239523316|gb|EEQ63182.1| ATP-dependent DNA helicase [Helicobacter pullorum MIT 98-5489]
          Length = 602

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 185/618 (29%), Positives = 304/618 (49%), Gaps = 72/618 (11%)

Query: 42  IDLLFYHPSSFIDRHYRPKI--SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           +  LF     FI + Y   I  SE+       +   + ++SSF++ K   Y  L +    
Sbjct: 12  VKTLFEFFLKFIPKDYTNTIFSSELKINTQAVLAVEVLRYSSFKIAKVLCYAPLFDK--- 68

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
           EI L+ F  K    K++F  G  + V+GK++   + + ++ P  +   + D+ FP+ +A 
Sbjct: 69  EIELVIFNAKPYH-KSIFKIGENLVVSGKVQIQNSFVSLIQPK-VLKQTGDI-FPIFKAQ 125

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---- 215
            S  T L   +    + E +   P +P+ I K LL             +I+ P  +    
Sbjct: 126 GSRITLLREFVKSLKLPEIIQAYPYVPKEILKHLL-------------LIYQPDTSFFEN 172

Query: 216 --KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI----PINVEGKIAQKILRNI 269
             K+  +   + E L + E+         MRK   K++      P+N + K  Q   RN+
Sbjct: 173 FKKNHGFFGASLEALKFIEIYE------YMRKLKAKKVEFLSICPLNGDFKKWQ---RNL 223

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF+ TK Q+ AI +I +D+       R++ GDVG GKT+V   ++  A     ++++M P
Sbjct: 224 PFALTKGQQMAILEIQKDLDSNKAARRVIVGDVGCGKTMVIFASVLMAYPK--KSILMVP 281

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+Q Y+  +K+     I V + T    Q+ +   LE      +  +IGTHAL    
Sbjct: 282 TSILAKQIYQESQKFLPK-HISVALWT----QSSKIGDLE-----SSDFVIGTHALLYRE 331

Query: 390 IQYYKLILVIVDEQHRFGVQQR------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
           ++ + L  V++DEQHRFG  QR      ++L Q+   PH+L  +ATPIPRTL +     +
Sbjct: 332 LKGFAL--VMIDEQHRFGTAQRNTLERMMELEQRR--PHILQFSATPIPRTLAMIESNFL 387

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           D S I + P   K I + +I      E++  ++  +++  +   + P +EE+K +++  +
Sbjct: 388 DFSFIRDLPFP-KDITSWVISKQDFRELLAHIQREIAKKHQVLIVYPLVEERKSADYTPL 446

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +      +HF   I + HG+  D  KE V++ F++    +L+ATTV+EVGI + + S I
Sbjct: 447 KKGEEFWRKHF-EGIYVTHGK--DKYKEEVLEEFRD-KGNILLATTVVEVGISLPNLSTI 502

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +I  AE  GLA LHQLRGRV R      C L      S+    RL      ++GF IA+ 
Sbjct: 503 VIVGAERLGLATLHQLRGRVSRNGLKGYCFLYSKQEKSQ----RLMRFCQIQNGFEIAQL 558

Query: 624 DLKQRKEGEIL-GIKQSG 640
           DL+ R  G++L G +QSG
Sbjct: 559 DLEYRNSGDLLSGEQQSG 576


>gi|284989494|ref|YP_003408048.1| transcription-repair coupling factor [Geodermatophilus obscurus DSM
           43160]
 gi|284062739|gb|ADB73677.1| transcription-repair coupling factor [Geodermatophilus obscurus DSM
           43160]
          Length = 1179

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 130/378 (34%), Positives = 213/378 (56%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q +AI ++  DM     M RI+ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 624 PFQETPDQLAAIDEVKTDMQHPVPMDRIICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 683

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA QH++   +      + V++++    +A  R+ L R+A G+  +++GTH L Q +
Sbjct: 684 TTLLANQHFKTFSERFAQFPVTVQVLSRFQSEAESREILRRLADGEIDVLVGTHRLLQPT 743

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            ++  L LVIVDE+ RFGV+ +  L    TA  VL M+ATPIPRTL ++  G  ++S I 
Sbjct: 744 TRFKDLGLVIVDEEQRFGVEHKEYLKTMRTAVDVLSMSATPIPRTLEMSLTGIREMSTIL 803

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
             P  R P+ T +   +         + +L +G + + I  +++  +K  +  R++V   
Sbjct: 804 TPPEERHPVLTYVGAWDDKQMAAAIRRELLRDG-QVFVIHNRVQSIDKAAAKIRNLVPE- 861

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + +A+ HG+M + + E +M  F      +L+ATT++E G+D+ +A+ +I++ 
Sbjct: 862 --------ARVAVGHGQMREHELERIMVGFWEKEYDVLVATTIVESGLDIPNANTLIVDR 913

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622
           A+ FGL+QLHQ+RGRVGRG E +     Y P  PL++ S  RL+ + +  D   G  +A 
Sbjct: 914 ADTFGLSQLHQIRGRVGRGRERAYAYFTYDPSRPLTETSVDRLTTIAHNTDLGAGMAVAM 973

Query: 623 EDLKQRKEGEILGIKQSG 640
           +DL+ R  G +LG +QSG
Sbjct: 974 KDLEIRGSGNLLGGEQSG 991


>gi|217031702|ref|ZP_03437206.1| hypothetical protein HPB128_155g15 [Helicobacter pylori B128]
 gi|298737160|ref|YP_003729690.1| transcription-repair coupling factor [Helicobacter pylori B8]
 gi|216946549|gb|EEC25149.1| hypothetical protein HPB128_155g15 [Helicobacter pylori B128]
 gi|298356354|emb|CBI67226.1| transcription-repair coupling factor (superfamily II helicase)
           [Helicobacter pylori B8]
          Length = 999

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 133/401 (33%), Positives = 216/401 (53%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAIAEISKDLSSHRMMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N    V++   +   + + K L+ +  G    ++GTHA+     
Sbjct: 543 TLLAHQHFETLRARFEN--FGVKVARLDRYASEKNKLLKAVELGLIDALVGTHAIL--GA 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKT 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++   +++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIYR---ELRRNGQIFYIHNHIASISKVKTKLENLIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 L---------KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  +A
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESVA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|134097431|ref|YP_001103092.1| transcription-repair coupling factor [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291004579|ref|ZP_06562552.1| transcription-repair coupling factor [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133910054|emb|CAM00166.1| transcription-repair coupling factor [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 1195

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 132/430 (30%), Positives = 222/430 (51%), Gaps = 21/430 (4%)

Query: 219 EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +W  + A+ R A  E+ A  + L   R+      G     +    +++    P++ T  Q
Sbjct: 583 DWKNTKAKARKAVKEIAAELVQLYAARQSAP---GHAFGADTPWQRELEDAFPYTETGDQ 639

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LAQQH
Sbjct: 640 LAAIDEVKADMQRAVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQH 699

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
                   ++  + V+ ++         +    +A G   ++IGTH L Q  ++Y  L L
Sbjct: 700 LNTFTDRMRSFPVTVKGLSRFTDPLESEQTTTGLAEGTVDVVIGTHRLLQTGVRYKDLGL 759

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VIVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P
Sbjct: 760 VIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHP 819

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           + T +   +   +V   ++  L    + +++  +++  EK   + R +V           
Sbjct: 820 VLTYVGAYDE-KQVAAAIRRELLRDGQVFFVHNRVQTIEKAARHLRELVPE--------- 869

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I   HG+M++   E ++  F      +L+ TT++E G+D+ +A+ +I+E ++  GL+Q
Sbjct: 870 ARIVTAHGQMNEDRLEKIIQGFWEREHDVLVCTTIVETGLDISNANTLIVERSDVLGLSQ 929

Query: 576 LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRKE 630
           LHQLRGRVGR  E      LY    PL+  ++ RL+ + +N+E   G  +A +DL+ R  
Sbjct: 930 LHQLRGRVGRARERGYAYFLYPEEKPLTDTAHDRLATIAQNSELGAGMAVAMKDLEIRGA 989

Query: 631 GEILGIKQSG 640
           G ILG +QSG
Sbjct: 990 GNILGAEQSG 999


>gi|90418629|ref|ZP_01226540.1| putative transcription-repair coupling factor [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336709|gb|EAS50414.1| putative transcription-repair coupling factor [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 1128

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 141/409 (34%), Positives = 223/409 (54%), Gaps = 20/409 (4%)

Query: 241 LLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           ++ R   K E   P  V  +++ ++      +  T  Q +A  D+L D++    M R++ 
Sbjct: 549 MVERLTEKAEAKAPKIVPDRVSFERFCARFAYELTADQNNACLDVLDDLASGRPMERLVC 608

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKY-TQNTQII-VEIIT 356
           GDVG GKT VAL A AAAV +G Q  ++AP  +LAQQH+ EF  ++  Q  +I+ +  + 
Sbjct: 609 GDVGYGKTEVALRAAAAAVFSGRQVAVIAPTTVLAQQHFREFSARFGAQGVEIVRLSRLV 668

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G       + A++    G A I++GTHA+    + +  L LVI+DE+ RFG +Q+  +  
Sbjct: 669 GKDEADAAKAAMQ---DGTAKIVVGTHAILSGDVAFDDLALVIIDEEQRFGSEQKAAMRT 725

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
            A   H+L MTATPIPRTL    +G  D+S I   P  R P+KT + P +    V + L 
Sbjct: 726 LADGVHILTMTATPIPRTLQSGFVGLSDLSIIATPPNRRSPVKTRVGPFDDA-AVRDALT 784

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              + G +++ +CP+IE     +   +  +   L    T+    +HG+M   + E  M +
Sbjct: 785 AERARGGQSFVVCPRIE-----DLEPMAAKLQELVPEQTT--VTLHGKMKPDEVEDAMLA 837

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G   +L+AT ++E G+DV +A+ +++ +A+ FGLA+LHQLRGRVGRG      +L  
Sbjct: 838 FAHGEHDVLLATAIVESGLDVANANTMVVCHADRFGLAELHQLRGRVGRGARRGHVLLTT 897

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
                L +++ +RL  L+       GF IA  DL  R  GE+LG +Q+G
Sbjct: 898 EADRELGEHARSRLEALEEFSTLGAGFDIAARDLDLRGTGELLGDEQAG 946


>gi|309804680|ref|ZP_07698745.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           09V1-c]
 gi|308166072|gb|EFO68290.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           09V1-c]
          Length = 1110

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 209/381 (54%), Gaps = 21/381 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P
Sbjct: 559 PYLETPDQIKAIKEIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVP 618

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY  + +  ++  + V ++     +    +    +++G+  I++GTH +    
Sbjct: 619 TTILAEQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRD 678

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S + 
Sbjct: 679 IKFKNLGLLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVME 738

Query: 450 EKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             PA R PI+T +     N + E   R    L+   + +++  +I+  ++K +    ++ 
Sbjct: 739 TPPANRYPIQTYVTEETPNIVREACLR---ELARNGQIFFLHNKIQDIDQKVAYLSQLIP 795

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++
Sbjct: 796 E---------ARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLV 846

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLI 620
           ENA+ +GL+QL+QLRGR+GR   ++    LY     L++ S  RL+ +++      GF I
Sbjct: 847 ENADTYGLSQLYQLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKI 906

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  DL  R  G +LG +Q G 
Sbjct: 907 AMRDLSIRGAGNVLGKQQHGF 927


>gi|166154965|ref|YP_001653220.1| transcription-repair coupling factor [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|165930953|emb|CAP06515.1| transcription-repair coupling factor [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 1079

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 134/387 (34%), Positives = 203/387 (52%), Gaps = 13/387 (3%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G+   K   + P+  T  Q  AI  I  DM     M R++ GD G GKT + + A   AV
Sbjct: 543 GEEVIKFAESFPYEETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAV 602

Query: 319 EAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             G  Q ++M P  ILA QH+E   +      I + +++        +K LE IA G+  
Sbjct: 603 CDGHKQVIVMVPTTILANQHFETFSQRMAGLPITIGLLSRFSQGKTMKKTLEDIAQGRID 662

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH +   +I+++   L+IVDE+ RFGV+ +  L ++      L ++ATPIPRTL L
Sbjct: 663 ILIGTHKVINKAIEFHNPGLLIVDEEQRFGVKAKDSLKERFPTIDCLTVSATPIPRTLYL 722

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +  G  D+S IT  P  R P+ T ++  +  + +   ++  L  G + Y I  +I    E
Sbjct: 723 SLSGARDLSLITMPPLDRLPVSTFVMEHSE-ETLSAAIRHELLRGGQVYVIHNRI----E 777

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S FR + E   +L     + I + HG+M   +  S+   FK     +L+AT +IE GID+
Sbjct: 778 SIFR-LGETIRTLIPE--ARIGVAHGQMHADELASIFYKFKTQQTNVLVATALIENGIDI 834

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE 615
            +A+ I+I++A+ FG+A L+Q++GRVGR  + + C  L  +   LS  +  RL  L   E
Sbjct: 835 PNANTILIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPTSKRLEALNKQE 894

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              G  IA  DL+ R  G ILG  QSG
Sbjct: 895 YGGGMKIALHDLEIRGAGNILGTDQSG 921


>gi|312872569|ref|ZP_07732637.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2062A-h1]
 gi|311091931|gb|EFQ50307.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2062A-h1]
          Length = 1110

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 209/381 (54%), Gaps = 21/381 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P
Sbjct: 559 PYLETPDQIKAIKEIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVP 618

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY  + +  ++  + V ++     +    +    +++G+  I++GTH +    
Sbjct: 619 TTILAEQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRD 678

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S + 
Sbjct: 679 IKFKNLGLLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVME 738

Query: 450 EKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             PA R PI+T +     N + E   R    L+   + +++  +I+  ++K +    ++ 
Sbjct: 739 TPPANRYPIQTYVTEETPNIVREACLR---ELARNGQIFFLHNKIQDIDQKVAYLSQLIP 795

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++
Sbjct: 796 E---------ARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLV 846

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLI 620
           ENA+ +GL+QL+QLRGR+GR   ++    LY     L++ S  RL+ +++      GF I
Sbjct: 847 ENADTYGLSQLYQLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKI 906

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  DL  R  G +LG +Q G 
Sbjct: 907 AMRDLSIRGAGNVLGKQQHGF 927


>gi|217031874|ref|ZP_03437377.1| hypothetical protein HPB128_199g82 [Helicobacter pylori B128]
 gi|216946526|gb|EEC25128.1| hypothetical protein HPB128_199g82 [Helicobacter pylori B128]
          Length = 613

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 148/442 (33%), Positives = 227/442 (51%), Gaps = 35/442 (7%)

Query: 212 PRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           P   KDFE    + S     L Y E+L     L   + QF  +I  P N E       + 
Sbjct: 159 PHFVKDFETNKNFPSQHLNALKYIEMLFYMKNLERKKLQFSAKIACPNNSER--LDNFIA 216

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF  T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++M
Sbjct: 217 SLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLM 274

Query: 328 APIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AP  ILA+Q Y    +F+  Y +     VE++ G   +       E+I H    ++IGT 
Sbjct: 275 APTSILAKQLYNEALKFLPPYFE-----VELLLGGSHKKRSNHLFEKITH----VVIGTQ 325

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTS 439
           AL  D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L  
Sbjct: 326 ALLFDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAK 385

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  
Sbjct: 386 SAFVKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIP 444

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           + S+ E  +   + F  ++    G+  + +KE V++ F+     +L+ATT+IEVGI +  
Sbjct: 445 YLSLSEGASFWQKRF-KNVYTTSGQ--NKNKEEVIEEFRE-LGSILLATTLIEVGISLPR 500

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            S+++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF 
Sbjct: 501 LSVMVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFK 556

Query: 620 IAEEDLKQRKEGEIL-GIKQSG 640
           IAE DL+ RK G++L G +QSG
Sbjct: 557 IAELDLEYRKSGDLLQGGEQSG 578


>gi|108563915|ref|YP_628231.1| transcription-repair coupling factor [Helicobacter pylori HPAG1]
 gi|107837688|gb|ABF85557.1| transcription-repair coupling factor [Helicobacter pylori HPAG1]
          Length = 999

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 133/401 (33%), Positives = 215/401 (53%), Gaps = 28/401 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTSDQEKAISEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N  + V  +   + +  + K L+ +  G   +++GTHA+     
Sbjct: 543 TLLAHQHFETLRARFENFGVKVARLDRYVSE--KNKLLKAVELGLMDVLVGTHAIL--GT 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV+VDE+H+F V+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLVVVDEEHKFSVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKT 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K ++    ++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIYR---ELRRNGQIFYIHNHIASISKVKTKLEELIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 LK---------IAILHSQINASESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIA 621
           NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIA 659
             DL+ R  G +LG  QSG  K   + +    L D++ E++
Sbjct: 827 YHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS 867


>gi|195941443|ref|ZP_03086825.1| transcription-repair coupling factor (mfd) [Borrelia burgdorferi
           80a]
          Length = 1125

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 135/378 (35%), Positives = 209/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q V+++P
Sbjct: 580 PYDETPDQIRAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVVVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNAETRILKELKIGKIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE      ++++ER 
Sbjct: 760 IPPQNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERL 814

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III N
Sbjct: 815 TPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINN 869

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA 
Sbjct: 870 ANKFGLAQLYQLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAM 929

Query: 623 EDLKQRKEGEILGIKQSG 640
           +D++ R  G +LG +Q G
Sbjct: 930 KDMEIRGVGNLLGREQHG 947


>gi|238062748|ref|ZP_04607457.1| transcription-repair coupling factor [Micromonospora sp. ATCC 39149]
 gi|237884559|gb|EEP73387.1| transcription-repair coupling factor [Micromonospora sp. ATCC 39149]
          Length = 1229

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 150/431 (34%), Positives = 233/431 (54%), Gaps = 23/431 (5%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W  S AR R A  E+ A  I L   RK  K     P   +    +++    P+  T  Q
Sbjct: 620  DWQKSKARARKAVKEIAAQLIQLYAARKASKGHAFAP---DSPWQRELEDAFPWQETPDQ 676

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +AI+++ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 677  LAAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 736

Query: 338  YE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            +  F ++ +Q    I ++     P+   R  LE IA G   I+IGTH L Q + ++  L 
Sbjct: 737  HNTFAERMSQFPVQIRQLSRFQTPKESER-TLEMIAGGTVDIVIGTHRLLQTATRFKSLG 795

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            LVIVDE+ RFGV+ +  L     +  VL M+ATPIPRTL +   G  ++S I   P  R 
Sbjct: 796  LVIVDEEQRFGVEHKEHLKTLRASVDVLSMSATPIPRTLEMAITGIREMSTIATPPEERH 855

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            P+ T +   +         + +L +G + +++  ++E  EK     R +V          
Sbjct: 856  PVLTFVGAHDERQVAASIHRELLRDG-QVFYLHNRVETIEKTARKIRELVPE-------- 906

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + +A+ HG+M +   E VM  F      +L+ TT++E GID+ +A+ +I+E A+  GLA
Sbjct: 907  -ARVAVAHGQMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLA 965

Query: 575  QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRK 629
            QLHQ+RGRVGRG E +    LY P  PL+++++ RL+ + ++TE   G  +A +DL+ R 
Sbjct: 966  QLHQIRGRVGRGRERAYAYFLYPPDKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRG 1025

Query: 630  EGEILGIKQSG 640
             G +LG +QSG
Sbjct: 1026 AGNLLGGEQSG 1036


>gi|237803178|ref|YP_002888372.1| transcription-repair coupling factor [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231274412|emb|CAX11207.1| transcription-repair coupling factor [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 1079

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 134/387 (34%), Positives = 203/387 (52%), Gaps = 13/387 (3%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G+   K   + P+  T  Q  AI  I  DM     M R++ GD G GKT + + A   AV
Sbjct: 543 GEEVIKFAESFPYEETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAV 602

Query: 319 EAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             G  Q ++M P  ILA QH+E   +      I + +++        +K LE IA G+  
Sbjct: 603 CDGHKQVIVMVPTTILANQHFETFSQRMAGLPITIGLLSRFSQGKTMKKTLEDIAQGRID 662

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH +   +I+++   L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL L
Sbjct: 663 ILIGTHKVINKAIEFHNPGLLIIDEEQRFGVKAKDSLKERFPTIDCLTVSATPIPRTLYL 722

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +  G  D+S IT  P  R P+ T ++  +  + +   ++  L  G + Y I  +I    E
Sbjct: 723 SLSGARDLSLITMPPLDRLPVSTFVMEHSE-ETLSAAIRHELLRGGQVYVIHNRI----E 777

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S FR + E   +L     + I + HG+M   +  S+   FK     +LIAT +IE GID+
Sbjct: 778 SIFR-LGETIRTLIPE--ARIGVAHGQMHANELASIFYKFKTQQTNVLIATALIENGIDI 834

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE 615
            +A+ I+I++A+ FG+A L+Q++GRVGR  + + C  L  +   LS  +  RL  L   E
Sbjct: 835 PNANTILIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPTSKRLEALNKQE 894

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              G  IA  DL+ R  G ILG  QSG
Sbjct: 895 YGGGMKIALHDLEIRGTGNILGTDQSG 921


>gi|298735506|ref|YP_003728027.1| ATP-dependent DNA helicase RecG [Helicobacter pylori B8]
 gi|298354691|emb|CBI65563.1| ATP-dependent DNA helicase RecG [Helicobacter pylori B8]
          Length = 623

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 148/442 (33%), Positives = 227/442 (51%), Gaps = 35/442 (7%)

Query: 212 PRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           P   KDFE    + S     L Y E+L     L   + QF  +I  P N E       + 
Sbjct: 169 PHFVKDFETNKNFPSQHLNALKYIEMLFYMKNLERKKLQFSAKIACPNNSER--LDNFIA 226

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF  T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++M
Sbjct: 227 SLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLM 284

Query: 328 APIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AP  ILA+Q Y    +F+  Y +     VE++ G   +       E+I H    ++IGT 
Sbjct: 285 APTSILAKQLYNEALKFLPPYFE-----VELLLGGSHKKRSNHLFEKITH----VVIGTQ 335

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTS 439
           AL  D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L  
Sbjct: 336 ALLFDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAK 395

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  
Sbjct: 396 SAFVKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIP 454

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           + S+ E  +   + F  ++    G+  + +KE V++ F+     +L+ATT+IEVGI +  
Sbjct: 455 YLSLSEGASFWQKRF-KNVYTTSGQ--NKNKEEVIEEFRE-LGSILLATTLIEVGISLPR 510

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            S+++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF 
Sbjct: 511 LSVMVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFK 566

Query: 620 IAEEDLKQRKEGEIL-GIKQSG 640
           IAE DL+ RK G++L G +QSG
Sbjct: 567 IAELDLEYRKSGDLLQGGEQSG 588


>gi|309807000|ref|ZP_07700982.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           03V1-b]
 gi|308166620|gb|EFO68817.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           03V1-b]
          Length = 1110

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 209/381 (54%), Gaps = 21/381 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI++I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P
Sbjct: 559 PYLETPDQIKAIREIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVP 618

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY  + +  ++  + V ++     +    +    +++G+  I++GTH +    
Sbjct: 619 TTILAEQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRD 678

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S + 
Sbjct: 679 IKFKNLGLLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVME 738

Query: 450 EKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             PA R PI+T +     N + E   R    L+   + +++  +I+  ++K +    ++ 
Sbjct: 739 TPPANRYPIQTYVTEETPNIVREACLR---ELARNGQIFFLHNKIQDIDQKVAYLSQLIP 795

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++
Sbjct: 796 E---------ARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLV 846

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLI 620
           ENA+ +GL+QL+QLRGR+GR   ++    LY     L++ S  RL+ +++      GF I
Sbjct: 847 ENADTYGLSQLYQLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKI 906

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  DL  R  G ILG +Q G 
Sbjct: 907 AMRDLSIRGAGNILGKQQHGF 927


>gi|302542946|ref|ZP_07295288.1| transcription-repair coupling factor [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460564|gb|EFL23657.1| transcription-repair coupling factor [Streptomyces himastatinicus
           ATCC 53653]
          Length = 1177

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 147/433 (33%), Positives = 235/433 (54%), Gaps = 27/433 (6%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 576 DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGADTPWQRELEDAFPYAETPDQ 632

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 633 LTTIGEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 692

Query: 338 Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
              F ++Y Q   ++V+ ++        +  LE +  G   ++IGTH LF    ++  L 
Sbjct: 693 MGTFTERYGQ-FPVVVKALSRFQTDTEAKAVLEGLRDGSVDVVIGTHRLFSSETKFKNLG 751

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 752 LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 811

Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
           P+ T + P    +I   I R   +L EG + ++I  ++E  ++  +  R +V        
Sbjct: 812 PVLTFVGPYEQKQIGAAIRR--ELLREG-QVFYIHNRVESIDRAAARLREIVPE------ 862

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 863 ---ARIATAHGQMSETALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFG 919

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
           L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 920 LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 979

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +QSG
Sbjct: 980 RGAGNLLGGEQSG 992


>gi|299143244|ref|ZP_07036324.1| transcription-repair coupling factor [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298517729|gb|EFI41468.1| transcription-repair coupling factor [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 1161

 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 138/436 (31%), Positives = 223/436 (51%), Gaps = 23/436 (5%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K    EW+    +     E +A  +  L  ++Q  K  G   + + +  ++      +  
Sbjct: 561 KLNSLEWSKTKSKAKKSVEDMAEDLIKLYAKRQEVK--GFAFSEDTQWQREFEDAFEYEE 618

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  + ++I  DM     M R+L  DVG GKT VA+ A   A+  G Q   + P  IL
Sbjct: 619 TQGQLESSEEIKNDMQSDKPMDRLLCADVGYGKTEVAIRAAFKAIMDGKQVAFLVPTTIL 678

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY  + +  ++  + + ++     +  ++K LE +  G   IIIGTH +    + + 
Sbjct: 679 AQQHYNTMIERFKDFPVKIALLCRFRSKMQQKKDLEDLKKGFVDIIIGTHRILSKDVVFK 738

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL         L +TATPIPRTL ++ +G  D+S I E P 
Sbjct: 739 DLGLLVIDEEQRFGVRHKEKLKILKENVDTLTLTATPIPRTLQMSMVGIRDMSVIEEPPE 798

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV--ERFNS 509
            R P++T ++  N +  + E +   +  G + Y++  ++   E K    R++V   +FN 
Sbjct: 799 ERFPVQTYVLEYNDM-MIREAILKEIERGGQVYFVYNKVANIENKLIELRNLVPEAKFN- 856

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                     I HG+MS+   E  M SF N    +L+ +T+IE G+D+ +A+ II+ +A 
Sbjct: 857 ----------IAHGQMSEQLLEDTMISFINHEFDVLLCSTIIETGMDIQNANTIIVSDAN 906

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEED 624
             GL+QL+QLRGR+GR  +I+     Y     LS+ +  RL  +K  TE   G+ IA  D
Sbjct: 907 RLGLSQLYQLRGRIGRSNKIAYAYFTYGRDISLSEIAQKRLKSIKEFTEFGSGYKIALRD 966

Query: 625 LKQRKEGEILGIKQSG 640
           L+ R  G ILG +Q G
Sbjct: 967 LEIRGSGSILGSRQHG 982


>gi|308235054|ref|ZP_07665791.1| transcription-repair coupling factor [Gardnerella vaginalis ATCC
            14018]
 gi|311114598|ref|YP_003985819.1| transcription-repair coupling factor [Gardnerella vaginalis ATCC
            14019]
 gi|310946092|gb|ADP38796.1| transcription-repair coupling factor [Gardnerella vaginalis ATCC
            14019]
          Length = 1200

 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 136/430 (31%), Positives = 226/430 (52%), Gaps = 21/430 (4%)

Query: 219  EWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W +  A+ R    E+    I L   R   K   G   + +    +++    P+  T  Q
Sbjct: 604  DWAATKAKARKHVQEVAEDLIKLYSARASTK---GFAFSSDTPWQKELEDAFPYQETPDQ 660

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++ QDM +   M R++ GDVG GKT +A+ A   AV+ G Q V++AP  +L QQH
Sbjct: 661  LTTIDEVKQDMQKPIPMDRLICGDVGFGKTEIAVRAAFKAVQDGKQVVVLAPTTLLVQQH 720

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE          + V  ++           ++ I  GQ  +++GTH L   +I++  L L
Sbjct: 721  YETFTNRFSGFPVTVAAMSRFQSAKEIDATMQGIESGQVDVVVGTHKLLNPNIKFKDLGL 780

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 781  VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 840

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHFT 515
            + T +       +V   +K  L  G + +++  ++E+  K  SN + +V           
Sbjct: 841  VLTYVGAYEDA-QVAACVKRELLRGGQVFYVHNRVEDISKIASNIQKLVP---------D 890

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + +AI HG+M +   ++++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+Q
Sbjct: 891  ARVAIAHGKMGEKQLDTIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQ 950

Query: 576  LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
            LHQLRGRVGRG E +    LY P  P+++ ++ RL+ +        GF +A +DL+ R  
Sbjct: 951  LHQLRGRVGRGRERAYAYFLYDPTKPMTQQAHDRLATIAQYTALGSGFDVAMKDLELRGT 1010

Query: 631  GEILGIKQSG 640
            G +LG  QSG
Sbjct: 1011 GNLLGDAQSG 1020


>gi|312874291|ref|ZP_07734323.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2052A-d]
 gi|311090164|gb|EFQ48576.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2052A-d]
          Length = 1110

 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 209/381 (54%), Gaps = 21/381 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI++I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P
Sbjct: 559 PYLETPDQIKAIREIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVP 618

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY  + +  ++  + V ++     +    +    +++G+  I++GTH +    
Sbjct: 619 TTILAEQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRD 678

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S + 
Sbjct: 679 IKFKNLGLLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVME 738

Query: 450 EKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             PA R PI+T +     N + E   R    L+   + +++  +I+  ++K +    ++ 
Sbjct: 739 TPPANRYPIQTYVTEETPNIVREACLR---ELARNGQIFFLHNKIQDIDQKVAYLSQLIP 795

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++
Sbjct: 796 E---------ARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLV 846

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLI 620
           ENA+ +GL+QL+QLRGR+GR   ++    LY     L++ S  RL+ +++      GF I
Sbjct: 847 ENADTYGLSQLYQLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKI 906

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  DL  R  G ILG +Q G 
Sbjct: 907 AMRDLSIRGAGNILGKQQHGF 927


>gi|210135687|ref|YP_002302126.1| ATP-dependent DNA helicase RecG [Helicobacter pylori P12]
 gi|210133655|gb|ACJ08646.1| ATP-dependent DNA helicase RecG [Helicobacter pylori P12]
          Length = 623

 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 150/442 (33%), Positives = 227/442 (51%), Gaps = 35/442 (7%)

Query: 212 PRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           P   KDFE    + S     L Y E+L     L   + QF  +I  P N E   A   + 
Sbjct: 169 PHFVKDFETNKNFPSQHLNALKYIEILFYMKNLERKKLQFGAKIACPNNSERLKA--FIA 226

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF  T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++M
Sbjct: 227 SLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLM 284

Query: 328 APIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AP  ILA+Q Y    +F+  Y +     VE++ G   +       E I H    ++IGT 
Sbjct: 285 APTSILAKQLYNEALKFLPPYFE-----VELLLGGSYKKRSNHLFETITH----VVIGTQ 335

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTS 439
           AL  D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L  
Sbjct: 336 ALLFDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAK 395

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  
Sbjct: 396 SAFVKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIP 454

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           + S+ E  +   + F  ++    G+  D +KE V++ F+     +L+ATT+IEVGI +  
Sbjct: 455 YLSLSEGASFWQKRF-KNVYTTSGQ--DKNKEEVIEEFRE-LGSILLATTLIEVGISLPR 510

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            S+++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF 
Sbjct: 511 LSVMVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFK 566

Query: 620 IAEEDLKQRKEGEIL-GIKQSG 640
           IAE DL+ RK G++L G +QSG
Sbjct: 567 IAELDLEYRKSGDLLQGGEQSG 588


>gi|109946913|ref|YP_664141.1| transcription-repair coupling factor [Helicobacter acinonychis str.
           Sheeba]
 gi|109714134|emb|CAJ99142.1| transcription-repair coupling factor [Helicobacter acinonychis str.
           Sheeba]
          Length = 1004

 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 204/379 (53%), Gaps = 25/379 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  QE AI +I +D+     M R+L GDVG GKT VA+ A+  A   G Q+ ++ P 
Sbjct: 483 FEYTNDQEKAIAEISKDLGSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+E ++   +N  + V  +   + +  + K L+ +  G   +++GTHA+     
Sbjct: 543 TLLAHQHFETLRARFENFGVKVARLDRYVSE--KNKLLKAVESGLIDVLVGTHAIL--GT 598

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L++VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +  
Sbjct: 599 KFKNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKT 658

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVER 506
            P  RKP +T +   N   + E+I R    L    + ++I   I    K +    +++ +
Sbjct: 659 PPTDRKPSRTFLKEKNDELLKEIIHR---ELRRNGQIFYIHNHIASISKVKKELENLIPK 715

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+
Sbjct: 716 LK---------IAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIID 766

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL-----IA 621
           NA++FGLA LHQLRGRVGRG++   C  L     S N      +L   ++ +L     IA
Sbjct: 767 NAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNDQALKRLLALEKNSYLGSGESIA 826

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G +LG  QSG
Sbjct: 827 YHDLEIRGGGNLLGQDQSG 845


>gi|313891693|ref|ZP_07825300.1| transcription-repair coupling factor [Dialister microaerophilus
           UPII 345-E]
 gi|313119971|gb|EFR43156.1| transcription-repair coupling factor [Dialister microaerophilus
           UPII 345-E]
          Length = 1126

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 204/379 (53%), Gaps = 20/379 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q SA + I + M     M  +L GDVG GKT VA+ A+   V +G Q++++ P 
Sbjct: 575 YVETPDQLSATEKIKKSMESSTPMDMLLCGDVGFGKTEVAMRAVFKCVMSGYQSIVLCPT 634

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH++   +      + V+++   +  + + K L  +  GQ  ++IGTH++   SI
Sbjct: 635 TVLASQHFKTFSERMNKFGVNVQLLNRFIKTSEKNKILSGLKSGQIDVLIGTHSVLSKSI 694

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
              KL L++VDE+ RFGV Q+ K     +   +L ++ATPIPRTL ++  G  D++ IT+
Sbjct: 695 NCKKLGLLVVDEEQRFGVFQKEKWKSLTSGIDILTLSATPIPRTLHMSLSGVRDMAAITQ 754

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R  ++T +I  N   + E + R K       + Y++  +IE        S+    +
Sbjct: 755 APQNRHAVQTYVIEYNEDIVKEAVLREK---ERNGQVYFVYNRIE--------SIDMMKD 803

Query: 509 SLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            L + F     I + +GRM   + E VM  F      LL+ TT+IE G+D  +A+ III 
Sbjct: 804 RLEKIFKGKVRIGVAYGRMKGSELEKVMFDFYQDKYDLLLCTTLIENGLDQPNANTIIIY 863

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIA 621
           +A+  GL+QL+Q++GRVGR ++I+     Y     LS+ +  RL+ ++  TE   GF IA
Sbjct: 864 DADFMGLSQLYQMKGRVGRSDKIAKAYFFYRKDKVLSEVAEKRLNTIREFTELGSGFKIA 923

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G +LG +Q G
Sbjct: 924 MRDLEIRGAGNLLGSEQHG 942


>gi|255349143|ref|ZP_05381150.1| transcription-repair coupling factor [Chlamydia trachomatis 70]
 gi|255503680|ref|ZP_05382070.1| transcription-repair coupling factor [Chlamydia trachomatis 70s]
 gi|255507360|ref|ZP_05382999.1| transcription-repair coupling factor [Chlamydia trachomatis
           D(s)2923]
 gi|289525792|emb|CBJ15273.1| transcription-repair coupling factor [Chlamydia trachomatis
           Sweden2]
 gi|296435368|gb|ADH17546.1| transcription-repair coupling factor [Chlamydia trachomatis E/150]
 gi|296439085|gb|ADH21238.1| transcription-repair coupling factor [Chlamydia trachomatis
           E/11023]
          Length = 1079

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 133/387 (34%), Positives = 203/387 (52%), Gaps = 13/387 (3%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G+   K   + P+  T  Q  AI  I  DM     M R++ GD G GKT + + A   AV
Sbjct: 543 GEEVIKFAESFPYEETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAV 602

Query: 319 EAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             G  Q ++M P  ILA QH+E   +      I + +++        +K LE IA G+  
Sbjct: 603 CDGHKQVIVMVPTTILANQHFETFSQRMAGLPITIGLLSRFSQGKTMKKTLEDIAQGRID 662

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH +   +I+++   L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL L
Sbjct: 663 ILIGTHKVINKAIEFHNPGLLIIDEEQRFGVKAKDSLKERFPTIDCLTVSATPIPRTLYL 722

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +  G  D+S IT  P  R P+ T ++  +  + +   ++  L  G + Y I  +I    E
Sbjct: 723 SLSGARDLSLITMPPLDRLPVSTFVMEHSE-ETLSAAIRHELLRGGQVYVIHNRI----E 777

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S FR + E   +L     + I + HG+M   +  S+   FK     +L+AT +IE GID+
Sbjct: 778 SIFR-LGETIRTLIPE--ARIGVAHGQMHADELASIFYKFKTQKTNVLVATALIENGIDI 834

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE 615
            +A+ I+I++A+ FG+A L+Q++GRVGR  + + C  L  +   LS  +  RL  L   E
Sbjct: 835 PNANTILIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPTSKRLEALNKQE 894

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              G  IA  DL+ R  G ILG  QSG
Sbjct: 895 YGGGMKIALHDLEIRGAGNILGTDQSG 921


>gi|312871549|ref|ZP_07731642.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           3008A-a]
 gi|311092944|gb|EFQ51295.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           3008A-a]
          Length = 1110

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 209/381 (54%), Gaps = 21/381 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI++I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P
Sbjct: 559 PYLETPDQIKAIREIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVP 618

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY  + +  ++  + V ++     +    +    +++G+  I++GTH +    
Sbjct: 619 TTILAEQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRD 678

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S + 
Sbjct: 679 IKFKNLGLLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVME 738

Query: 450 EKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             PA R PI+T +     N + E   R    L+   + +++  +I+  ++K +    ++ 
Sbjct: 739 TPPANRYPIQTYVTEETPNIVREACLR---ELARNGQIFFLHNKIQDIDQKVAYLSQLIP 795

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++
Sbjct: 796 E---------ARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLV 846

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLI 620
           ENA+ +GL+QL+QLRGR+GR   ++    LY     L++ S  RL+ +++      GF I
Sbjct: 847 ENADTYGLSQLYQLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKI 906

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  DL  R  G ILG +Q G 
Sbjct: 907 AMRDLSIRGAGNILGKQQHGF 927


>gi|109946646|ref|YP_663874.1| ATP-dependent DNA helicase RecG [Helicobacter acinonychis str.
           Sheeba]
 gi|109713867|emb|CAJ98875.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba]
          Length = 621

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 233/443 (52%), Gaps = 39/443 (8%)

Query: 212 PRKAKDFEW--TSPAR--ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           P   KD+E+  T P++    L Y E+L     L   + QF  +I  P N E       + 
Sbjct: 169 PHFLKDYEYYKTFPSQHLNALKYIEMLFYMKNLERKKLQFNAKIICPNNSER--LNHFIA 226

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF  T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++M
Sbjct: 227 SLPFKLTNDQQNAIKEIQNDLTSPIACKRLIVGDVGCGKTMVILASMVLAYP--NKTLLM 284

Query: 328 APIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKAL-ERIAHGQAHIIIGT 382
           AP  ILA+Q Y    +F+  Y +     VE++ G    +H++  L E+I H    ++IGT
Sbjct: 285 APTSILAKQLYNEALKFLPPYFE-----VELLLGG---SHKKNHLFEKITH----VVIGT 332

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLT 438
            AL  D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L 
Sbjct: 333 QALLFDKRDLDEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALA 392

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               +  + I   P   K IKT+++       V+E++   +++  +   + P + E ++ 
Sbjct: 393 KSAFVQTTMIRGIPYP-KEIKTLVLHKREFKLVMEKISEEIAKNHQVIVVYPLVNESEKI 451

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            + S+ E  +   + F  ++ I  G+  D +KE V++ F+  +  +L+ATT+IEVGI + 
Sbjct: 452 PYLSLSEGASFWQKRF-KNVYITSGQ--DKNKEEVIEEFRE-SGSILLATTLIEVGISLP 507

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             S++++   E  GLA LHQLRGRV R      C L       +    RL       DGF
Sbjct: 508 RLSVMVVLAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFAEELDGF 563

Query: 619 LIAEEDLKQRKEGEIL-GIKQSG 640
            IAE DL+ RK G++L G +QSG
Sbjct: 564 KIAELDLEYRKSGDLLQGGEQSG 586


>gi|166154090|ref|YP_001654208.1| transcription-repair coupling factor [Chlamydia trachomatis 434/Bu]
 gi|301335295|ref|ZP_07223539.1| transcription-repair coupling factor [Chlamydia trachomatis L2tet1]
 gi|165930078|emb|CAP03561.1| transcription-repair coupling factor [Chlamydia trachomatis 434/Bu]
          Length = 1079

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 133/387 (34%), Positives = 203/387 (52%), Gaps = 13/387 (3%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G+   K   + P+  T  Q  AI  I  DM     M R++ GD G GKT + + A   AV
Sbjct: 543 GEEVIKFAESFPYEETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAV 602

Query: 319 EAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             G  Q ++M P  ILA QH+E   +      I + +++        +K LE IA G+  
Sbjct: 603 CDGHKQVIVMVPTTILANQHFETFSQRMAGLPITIGLLSRFSQGKTMKKTLEDIAQGRID 662

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH +   +I+++   L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL L
Sbjct: 663 ILIGTHKVINKAIEFHNPGLLIIDEEQRFGVKAKDSLKERFPTIDCLTVSATPIPRTLYL 722

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +  G  D+S IT  P  R P+ T ++  +  + +   ++  L  G + Y I  +I    E
Sbjct: 723 SLSGARDLSLITMPPLDRLPVSTFVMEHSE-ETLSAAIRHELLRGGQVYVIHNRI----E 777

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S FR + E   +L     + I + HG+M   +  S+   FK     +L+AT +IE GID+
Sbjct: 778 SIFR-LGETIRTLIPE--ARIGVAHGQMHADELASIFYKFKTQQTNVLVATALIENGIDI 834

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE 615
            +A+ I+I++A+ FG+A L+Q++GRVGR  + + C  L  +   LS  +  RL  L   E
Sbjct: 835 PNANTILIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPTSKRLEALNKQE 894

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              G  IA  DL+ R  G ILG  QSG
Sbjct: 895 YGGGMKIALHDLEIRGAGNILGTDQSG 921


>gi|329920532|ref|ZP_08277264.1| transcription-repair coupling factor [Lactobacillus iners SPIN
           1401G]
 gi|328936208|gb|EGG32661.1| transcription-repair coupling factor [Lactobacillus iners SPIN
           1401G]
          Length = 1110

 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 125/381 (32%), Positives = 209/381 (54%), Gaps = 21/381 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI++I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P
Sbjct: 559 PYLETPDQIKAIREIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVP 618

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY  + +  ++  + V ++     +    +    +++G+  I++GTH +    
Sbjct: 619 TTILAEQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRD 678

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S + 
Sbjct: 679 IKFKNLGLLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVME 738

Query: 450 EKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             PA R PI+T +     N + E   R    L+   + +++  +I+  ++K +    ++ 
Sbjct: 739 TPPANRYPIQTYVTEETPNIVREACLR---ELARNGQIFFLHNKIQDIDQKVAYLSQLIP 795

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++
Sbjct: 796 E---------ARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLV 846

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLI 620
           ENA+ +GL+QL+QLRGR+GR   ++    LY     L++ S  RL+ +++      GF I
Sbjct: 847 ENADTYGLSQLYQLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKI 906

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  DL  R  G +LG +Q G 
Sbjct: 907 AMRDLSIRGAGNVLGKQQHGF 927


>gi|226321322|ref|ZP_03796849.1| transcription-repair coupling factor [Borrelia burgdorferi Bol26]
 gi|226233118|gb|EEH31870.1| transcription-repair coupling factor [Borrelia burgdorferi Bol26]
          Length = 1125

 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 209/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P
Sbjct: 580 PYDETPDQIRAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNAETRILKELKIGKIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE      ++++ER 
Sbjct: 760 IPPQNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERL 814

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III N
Sbjct: 815 TPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINN 869

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA 
Sbjct: 870 ANKFGLAQLYQLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAM 929

Query: 623 EDLKQRKEGEILGIKQSG 640
           +D++ R  G +LG +Q G
Sbjct: 930 KDMEIRGVGNLLGREQHG 947


>gi|76789489|ref|YP_328575.1| transcription-repair coupling factor [Chlamydia trachomatis
           A/HAR-13]
 gi|237805099|ref|YP_002889253.1| transcription-repair coupling factor [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311580|ref|ZP_05354150.1| transcription-repair coupling factor [Chlamydia trachomatis 6276]
 gi|255317881|ref|ZP_05359127.1| transcription-repair coupling factor [Chlamydia trachomatis 6276s]
 gi|76168019|gb|AAX51027.1| transcription-repair coupling factor [Chlamydia trachomatis
           A/HAR-13]
 gi|231273399|emb|CAX10314.1| transcription-repair coupling factor [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 1079

 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 133/387 (34%), Positives = 203/387 (52%), Gaps = 13/387 (3%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G+   K   + P+  T  Q  AI  I  DM     M R++ GD G GKT + + A   AV
Sbjct: 543 GEEVIKFAESFPYEETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAV 602

Query: 319 EAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             G  Q ++M P  ILA QH+E   +      I + +++        +K LE IA G+  
Sbjct: 603 CDGHKQVIVMVPTTILANQHFETFSQRMAGLPITIGLLSRFSQGKTMKKTLEDIAQGRID 662

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH +   +I+++   L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL L
Sbjct: 663 ILIGTHKVINKAIEFHNPGLLIIDEEQRFGVKAKDSLKERFPTIDCLTVSATPIPRTLYL 722

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +  G  D+S IT  P  R P+ T ++  +  + +   ++  L  G + Y I  +I    E
Sbjct: 723 SLSGARDLSLITMPPLDRLPVSTFVMEHSE-ETLSAAIRHELLRGGQVYVIHNRI----E 777

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S FR + E   +L     + I + HG+M   +  S+   FK     +L+AT +IE GID+
Sbjct: 778 SIFR-LGETIRTLIPE--ARIGVAHGQMHANELASIFYKFKTQQTNVLVATALIENGIDI 834

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE 615
            +A+ I+I++A+ FG+A L+Q++GRVGR  + + C  L  +   LS  +  RL  L   E
Sbjct: 835 PNANTILIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPTSKRLEALNKQE 894

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              G  IA  DL+ R  G ILG  QSG
Sbjct: 895 YGGGMKIALHDLEIRGAGNILGTDQSG 921


>gi|259500996|ref|ZP_05743898.1| transcription-repair-coupling factor [Lactobacillus iners DSM
           13335]
 gi|302190555|ref|ZP_07266809.1| transcription-repair coupling factor [Lactobacillus iners AB-1]
 gi|259167690|gb|EEW52185.1| transcription-repair-coupling factor [Lactobacillus iners DSM
           13335]
          Length = 1110

 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 209/381 (54%), Gaps = 21/381 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI++I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P
Sbjct: 559 PYLETPDQIKAIREIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVP 618

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY  + +  ++  + V ++     +    +    +++G+  I++GTH +    
Sbjct: 619 TTILAEQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRD 678

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S + 
Sbjct: 679 IKFKNLGLLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVME 738

Query: 450 EKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             PA R PI+T +     N + E   R    L+   + +++  +I+  ++K +    ++ 
Sbjct: 739 TPPANRYPIQTYVTEETPNIVREACLR---ELARNGQIFFLHNKIQDIDQKVAYLSQLIP 795

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++
Sbjct: 796 E---------ARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLV 846

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLI 620
           ENA+ +GL+QL+QLRGR+GR   ++    LY     L++ S  RL+ +++      GF I
Sbjct: 847 ENADTYGLSQLYQLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKI 906

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  DL  R  G ILG +Q G 
Sbjct: 907 AMRDLSIRGAGNILGKQQHGF 927


>gi|283458570|ref|YP_003363203.1| transcription-repair coupling factor [Rothia mucilaginosa DY-18]
 gi|283134618|dbj|BAI65383.1| transcription-repair coupling factor [Rothia mucilaginosa DY-18]
          Length = 1330

 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 140/432 (32%), Positives = 232/432 (53%), Gaps = 25/432 (5%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W  + +R R A  E+ A  + L   R+  +   G     +    +++  + P++ T  Q
Sbjct: 722  DWAKTKSRARKAVKEIAADLVKLYSARQASR---GHAFAADTPWQRELEESFPYNETPDQ 778

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +AI ++ +DM ++  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH
Sbjct: 779  LTAIHEVKEDMEKEIPMDRLISGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQH 838

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE   +      + + +++        R+  E IA G   ++IGTH +  DS+ +  L L
Sbjct: 839  YETFSERFSGFPVKIRVLSRFQKAKETRQITEEIASGAVDVVIGTHRILSDSVVFKDLGL 898

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ + KL Q  T   VL M+ATPIPRTL ++  G  + S +   P  R P
Sbjct: 899  VIIDEEQRFGVEHKEKLKQMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATAPEERHP 958

Query: 458  IKTVIIPINRIDEVIERL--KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            + T + P  R D  I     + ++ EG + +++  ++     ++   V      L     
Sbjct: 959  VLTFVGP--RTDSQITAAIRREIMREG-QVFFVHNRV-----ADIDDVAAEIGKLVPE-- 1008

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + IA  HGRMS+   E ++  F      +L+ TT++E G+D+ +A+ +I+++A+++GL+Q
Sbjct: 1009 ARIATAHGRMSESRLEQIIVDFWERRFDVLVCTTIVETGLDISNANTLIVDHAQNYGLSQ 1068

Query: 576  LHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLSVLKNTED---GFLIAEEDLKQR 628
            LHQLRGRVGRG E +    LY  P+ K     ++ RL  +    +   G  +A +DL+ R
Sbjct: 1069 LHQLRGRVGRGRERAYAYFLY--PVDKTLGEIAHERLKAVATHNELGAGLQLAMKDLEIR 1126

Query: 629  KEGEILGIKQSG 640
              G +LG +QSG
Sbjct: 1127 GAGNLLGGEQSG 1138


>gi|325912458|ref|ZP_08174853.1| transcription-repair coupling factor [Lactobacillus iners UPII
           143-D]
 gi|325475800|gb|EGC78971.1| transcription-repair coupling factor [Lactobacillus iners UPII
           143-D]
          Length = 1110

 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 125/381 (32%), Positives = 209/381 (54%), Gaps = 21/381 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI++I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P
Sbjct: 559 PYLETPDQIKAIREIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVP 618

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY  + +  ++  + V ++     +    +    +++G+  I++GTH +    
Sbjct: 619 TTILAEQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRD 678

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S + 
Sbjct: 679 IKFKNLGLLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVME 738

Query: 450 EKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             PA R PI+T +     N + E   R    L+   + +++  +I+  ++K +    ++ 
Sbjct: 739 TPPANRYPIQTYVTEETPNIVREACLR---ELARNGQIFFLHNKIQDIDQKVAYLSQLIP 795

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++
Sbjct: 796 E---------ARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLV 846

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLI 620
           ENA+ +GL+QL+QLRGR+GR   ++    LY     L++ S  RL+ +++      GF I
Sbjct: 847 ENADTYGLSQLYQLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKI 906

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  DL  R  G +LG +Q G 
Sbjct: 907 AMRDLSIRGAGNVLGKQQHGF 927


>gi|296436295|gb|ADH18469.1| transcription-repair coupling factor [Chlamydia trachomatis G/9768]
 gi|296438154|gb|ADH20315.1| transcription-repair coupling factor [Chlamydia trachomatis
           G/11074]
 gi|297140655|gb|ADH97413.1| transcription-repair coupling factor [Chlamydia trachomatis G/9301]
          Length = 1079

 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 133/387 (34%), Positives = 203/387 (52%), Gaps = 13/387 (3%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G+   K   + P+  T  Q  AI  I  DM     M R++ GD G GKT + + A   AV
Sbjct: 543 GEEVIKFAESFPYEETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAV 602

Query: 319 EAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             G  Q ++M P  ILA QH+E   +      I + +++        +K LE IA G+  
Sbjct: 603 CDGHKQVIVMVPTTILANQHFETFSQRMAGLPITIGLLSRFSQGKTMKKTLEDIAQGRID 662

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH +   +I+++   L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL L
Sbjct: 663 ILIGTHKVINKAIEFHNPGLLIIDEEQRFGVKAKDSLKERFPTIDCLTVSATPIPRTLYL 722

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +  G  D+S IT  P  R P+ T ++  +  + +   ++  L  G + Y I  +I    E
Sbjct: 723 SLSGARDLSLITMPPLDRLPVSTFVMEHSE-ETLSAAIRHELLRGGQVYVIHNRI----E 777

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S FR + E   +L     + I + HG+M   +  S+   FK     +L+AT +IE GID+
Sbjct: 778 SIFR-LGETIRTLIPE--ARIGVAHGQMHANELASIFYKFKTQQTNVLVATALIENGIDI 834

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE 615
            +A+ I+I++A+ FG+A L+Q++GRVGR  + + C  L  +   LS  +  RL  L   E
Sbjct: 835 PNANTILIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPTSKRLEALNKQE 894

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              G  IA  DL+ R  G ILG  QSG
Sbjct: 895 YGGGMKIALHDLEIRGAGNILGTDQSG 921


>gi|15605481|ref|NP_220267.1| transcription-repair coupling factor [Chlamydia trachomatis
           D/UW-3/CX]
 gi|3329208|gb|AAC68343.1| Transcription-Repair Coupling [Chlamydia trachomatis D/UW-3/CX]
 gi|296437224|gb|ADH19394.1| transcription-repair coupling factor [Chlamydia trachomatis
           G/11222]
 gi|297748878|gb|ADI51424.1| Transcription-repair coupling factor [Chlamydia trachomatis D-EC]
 gi|297749758|gb|ADI52436.1| Transcription-repair coupling factor [Chlamydia trachomatis D-LC]
          Length = 1079

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/387 (34%), Positives = 203/387 (52%), Gaps = 13/387 (3%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G+   K   + P+  T  Q  AI  I  DM     M R++ GD G GKT + + A   AV
Sbjct: 543 GEEVIKFAESFPYEETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAV 602

Query: 319 EAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             G  Q ++M P  ILA QH+E   +      I + +++        +K LE IA G+  
Sbjct: 603 CDGHKQVIVMVPTTILANQHFETFSQRMAGLPITIGLLSRFSQGKTMKKTLEDIAQGRID 662

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH +   +I+++   L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL L
Sbjct: 663 ILIGTHKVINKAIEFHNPGLLIIDEEQRFGVKAKDSLKERFPTIDCLTVSATPIPRTLYL 722

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +  G  D+S IT  P  R P+ T ++  +  + +   ++  L  G + Y I  +I    E
Sbjct: 723 SLSGARDLSLITMPPLDRLPVSTFVMEHSE-ETLSAAIRHELLRGGQVYVIHNRI----E 777

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S FR + E   +L     + I + HG+M   +  S+   FK     +L+AT +IE GID+
Sbjct: 778 SIFR-LGETIRTLIPE--ARIGVAHGQMHANELASIFYKFKTQQTNVLVATALIENGIDI 834

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE 615
            +A+ I+I++A+ FG+A L+Q++GRVGR  + + C  L  +   LS  +  RL  L   E
Sbjct: 835 PNANTILIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPTSKRLEALNKQE 894

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSG 640
              G  IA  DL+ R  G ILG  QSG
Sbjct: 895 YGGGMKIALHDLEIRGAGNILGTDQSG 921


>gi|241518444|ref|YP_002979072.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862857|gb|ACS60521.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 1072

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/387 (33%), Positives = 206/387 (53%), Gaps = 20/387 (5%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           R  PF+ T  Q  AI+ +L D++    M R++ GDVG GKT +AL A AA   AGGQ V+
Sbjct: 528 RRFPFTETHDQAEAIRSVLSDLATGRAMNRLVCGDVGFGKTEIALRAAAAVALAGGQVVV 587

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +AP  +L +QH+    +    T + V +++  +     +K    +A G+  +I+ T A+ 
Sbjct: 588 IAPTTVLTRQHFATFTRRFAGTGVSVGMLSRLLKPREAKKVKAALAVGEIGVIVTTQAIL 647

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              +++  L LVIVDE+HRFG++++  +     + H L M+ATPIPRTL    +G  ++S
Sbjct: 648 AKDVRFAHLALVIVDEEHRFGLKEKRAMNTLVPSLHTLAMSATPIPRTLQSAMVGVHEVS 707

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKK--ESNFRS 502
            +T  P  R+P++T    ++  D    R  ++  +  G +++ + P+IE+    ++  R 
Sbjct: 708 LLTTPPFRRRPVRT---SLSVFDHASMRTGLMREKRRGGQSFVVVPRIEDIDVVKTILRK 764

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +V            S+ + HG M     +  +  F  G   +L+AT +IE G+DV  A+ 
Sbjct: 765 IVPEL---------SVKVAHGDMPAAAIDEAIVGFAEGDGDVLLATNIIENGLDVPRANT 815

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEIS-SCILLYHPPLSKNSYTRLSVLKNTE---DGF 618
           + +  A+ FGLAQLHQLRGRVGRG     + +L  +  LS  +  RLS L   +    G 
Sbjct: 816 MFVWQADRFGLAQLHQLRGRVGRGGAQGIATLLTENAELSDETRLRLSTLVENDRLGAGL 875

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFL 645
            I+  DL  R  G+I G  Q+G  K +
Sbjct: 876 SISLRDLDLRGGGDIAGEDQAGHMKVI 902


>gi|261840195|gb|ACX99960.1| ATP-dependent DNA helicase RecG [Helicobacter pylori 52]
          Length = 621

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 150/442 (33%), Positives = 225/442 (50%), Gaps = 35/442 (7%)

Query: 212 PRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           P   KDFE    + S     L Y E+L     L   + QF  +I  P N E   A   + 
Sbjct: 169 PHFVKDFETHKNFPSQHLNALKYIEMLFYMKNLERKKLQFNAKIACPNNSERLKA--FIA 226

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF  T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++M
Sbjct: 227 SLPFKLTHDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLM 284

Query: 328 APIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AP  ILA+Q Y    +F+  Y +     VE++ G   +       E I H    ++IGT 
Sbjct: 285 APTSILAKQLYNEALKFLPPYFE-----VELLLGGSHKKRSNHLFETITH----VVIGTQ 335

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTS 439
           AL  D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L  
Sbjct: 336 ALLFDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAK 395

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  
Sbjct: 396 SAFVKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIP 454

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           + S+ E  +   + F   +    G+  D +KE V++ F+     +L+ATT+IEVGI +  
Sbjct: 455 YLSLSEGASFWQKRF-KKVYTTSGQ--DKNKEEVIEEFREFGS-ILLATTLIEVGISLPR 510

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            S+++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF 
Sbjct: 511 LSVMVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFK 566

Query: 620 IAEEDLKQRKEGEIL-GIKQSG 640
           IAE DL+ RK G++L G +QSG
Sbjct: 567 IAELDLEYRKSGDLLQGGEQSG 588


>gi|15646131|ref|NP_208313.1| ATP-dependent DNA helicase RecG [Helicobacter pylori 26695]
 gi|3914610|sp|O26051|RECG_HELPY RecName: Full=ATP-dependent DNA helicase recG
 gi|2314702|gb|AAD08562.1| DNA recombinase (recG) [Helicobacter pylori 26695]
          Length = 623

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 149/442 (33%), Positives = 227/442 (51%), Gaps = 35/442 (7%)

Query: 212 PRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           P   KDFE    + S     L Y E+L     L   + QF  +I  P N E   A   + 
Sbjct: 169 PHFVKDFETNKNFPSQHLNALKYIEMLFYMKNLERKKLQFGAKIACPNNNERLKA--FIA 226

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF  T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M   +    + ++M
Sbjct: 227 SLPFKLTRDQQNAIKEIQNDLTSSIACKRLIIGDVGCGKTMVILASMV--LTYPNKTLLM 284

Query: 328 APIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AP  ILA+Q Y    +F+  Y +     VE++ G   +       E I H    ++IGT 
Sbjct: 285 APTSILAKQLYNEALKFLPPYFE-----VELLLGGSYKKRSNHLFETITH----VVIGTQ 335

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTS 439
           AL  D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L  
Sbjct: 336 ALLFDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAK 395

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  
Sbjct: 396 SAFVKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIP 454

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           + S+ E  +   + F   +    G+  D +KE V++ F+  +  +L+ATT+IEVGI +  
Sbjct: 455 YLSLSEGASFWQKRF-KKVYTTSGQ--DKNKEEVIEEFRE-SGSILLATTLIEVGISLPR 510

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            S+++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF 
Sbjct: 511 LSVMVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFK 566

Query: 620 IAEEDLKQRKEGEIL-GIKQSG 640
           IAE DL+ RK G++L G +QSG
Sbjct: 567 IAELDLEYRKSGDLLQGGEQSG 588


>gi|254384864|ref|ZP_05000200.1| transcriptional-repair coupling factor [Streptomyces sp. Mg1]
 gi|194343745|gb|EDX24711.1| transcriptional-repair coupling factor [Streptomyces sp. Mg1]
          Length = 1187

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 149/431 (34%), Positives = 234/431 (54%), Gaps = 23/431 (5%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 586  DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHTFGPDTPWQRELEDAFPYAETPDQ 642

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 643  LTTIAEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 702

Query: 338  Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            +  F ++Y+Q   + V+ ++        +  LE +  G   I+IGTH LF    ++  L 
Sbjct: 703  FGTFSERYSQ-FPVKVKALSRFQSDTESKATLEGLKEGSVDIVIGTHRLFSQETRFKDLG 761

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 762  LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 821

Query: 457  PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            P+ T + P    +I   + R   +L EG+     C  I  + ES  R+  +    + E  
Sbjct: 822  PVLTFVGPYEEKQIGAAVRR--ELLREGQ-----CFYIHNRVESIDRAAAKLREIVPE-- 872

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+
Sbjct: 873  -ARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLS 931

Query: 575  QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRK 629
            QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ R 
Sbjct: 932  QLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRG 991

Query: 630  EGEILGIKQSG 640
             G +LG +QSG
Sbjct: 992  AGNLLGGEQSG 1002


>gi|332665410|ref|YP_004448198.1| transcription-repair coupling factor [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332334224|gb|AEE51325.1| transcription-repair coupling factor [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 1141

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/414 (30%), Positives = 209/414 (50%), Gaps = 18/414 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q  A  D   DM++   M R++ GDVG GKT VA+ A   A+  G Q  ++ P 
Sbjct: 579 YEDTPDQLQATIDTKNDMTKPYPMDRLICGDVGFGKTEVAIRAAFKAILDGKQVAVLVPT 638

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH +      ++    V+ +        +++  ER+  G+  +IIGT AL    +
Sbjct: 639 TILALQHAKTFGDRLKDFSATVDYVNRFRTAGEKKQIFERLREGKIDLIIGTQALLNQEV 698

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L+I+DE+ +FGV  + KL         L +TATPIPRTL  + +   D+S I  
Sbjct: 699 KFKDLGLLIIDEEQKFGVASKEKLRNFKVNVDTLTLTATPIPRTLQFSLMAARDLSIIRT 758

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R+PI T  + I   D + E +   ++ G + +++  ++  K  +    ++ R    
Sbjct: 759 PPPNRQPIHTE-VRIFSEDIIKEAIYYEVNRGGQVFFVHNRV--KNLAEVEMMIRRLCPD 815

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            E     +A  HG+M     E  +  F +    +L+ T +IE G+D+ +A+ ++I NA  
Sbjct: 816 VE-----VASAHGQMESDKLEKTLVDFIDKQYDVLVCTNIIETGLDISNANTMLINNAHQ 870

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLS---KNSYTRLSVLKNTED---GFLIAEED 624
           FG++ LHQLRGRVGR  + + C  L+ PP+S    ++  RL  L+   D   GF IA  D
Sbjct: 871 FGMSDLHQLRGRVGRSNKKAYC-YLFSPPMSTLTSDARKRLRTLEEFSDLGSGFHIAMRD 929

Query: 625 LKQRKEGEILGIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           L  R  G +LG +QSG      +   Q  L ++++E+   D K +  ++ + T 
Sbjct: 930 LDIRGAGNLLGAEQSGFIVDIGYETYQKILEEAIIELKETDFKDVFAEELEKTD 983


>gi|303230285|ref|ZP_07317052.1| transcription-repair coupling factor [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515068|gb|EFL57043.1| transcription-repair coupling factor [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 1096

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 215/385 (55%), Gaps = 17/385 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+   + P+  T+ Q  A ++I + M +   M R+L GDVG GKT VA+ A+  AV +G 
Sbjct: 539 QEFEDDFPYEETEDQLQATREIKESMERPTPMDRLLAGDVGFGKTEVAMRAIFKAVVSGK 598

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+          + V+++      A +++ L+ + +G   I+IGT
Sbjct: 599 QVAVLVPTTVLAQQHYQTFLNRFNPFGVKVDVLNRFRSTAEKKEVLKGVENGSIDILIGT 658

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H+L    +++  L  ++VDE+ RFGV Q+ K  + A+   VL ++ATPIPRTL ++ +G 
Sbjct: 659 HSLLNKKVKFKDLGFLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGV 718

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
            ++S I+  P  R P++T ++  + ++ + + +K  L+ G + Y++  ++         +
Sbjct: 719 REMSVISTPPEDRLPVQTYVVEYD-MNLIADAIKRELARGGQVYFVYNRV---------A 768

Query: 503 VVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            +     L E     +  A+ HG+M+    E +M  F  G   +L++T++IE G+D+ +A
Sbjct: 769 SINHMGELLEQALPDLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNA 828

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
           + III +A+  GL+QL+Q+RGRVGR    +    +Y P   LS+ +  RL  ++   +  
Sbjct: 829 NTIIIYDADRLGLSQLYQMRGRVGRSRRRAYAYFMYRPDKMLSEAAEKRLKAIEEFTELG 888

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640
            GF +A  DL+ R  G +LG +Q G
Sbjct: 889 AGFKLAMRDLEIRGAGNLLGSQQHG 913


>gi|86742605|ref|YP_483005.1| transcription-repair coupling factor [Frankia sp. CcI3]
 gi|86569467|gb|ABD13276.1| transcription-repair coupling factor [Frankia sp. CcI3]
          Length = 1208

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 211/379 (55%), Gaps = 19/379 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF  T  Q +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 651  PFRETPDQLAAIDEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 710

Query: 330  IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              +L QQH++ F ++Y     ++  +   N P  H+    E +A G   ++IGTH L   
Sbjct: 711  TTLLVQQHFQTFSERYAAFPVVVKAMSRFNSPAEHK-AVQEGLATGSVDVVIGTHRLLSG 769

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
              ++  L LVIVDE+ RFGV+ + +L +  TA  VL M+ATPIPRTL ++  G  ++S I
Sbjct: 770  ENRFKDLGLVIVDEEQRFGVEHKEQLKKMRTAVDVLTMSATPIPRTLEMSITGIRELSTI 829

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVER 506
               P  R P+ T +   +         + +L EG + ++I  ++E  ++  +  R +V  
Sbjct: 830  DTPPEERHPVLTSVAAYDARQVAAAIRRELLREG-QVFFIHNRVETIDRAAARLRDLVPE 888

Query: 507  FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                     + IA  HG++ +   E VM SF      +L+ TT++E G+D+ +A+ +I+E
Sbjct: 889  ---------ARIATAHGQLHEDALEQVMVSFWEKKFDVLVCTTIVESGLDISNANTLIVE 939

Query: 567  NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621
             A+ FGL+QLHQLRGRVGRG + +    LY P  PL++ ++ RL+ +    D   G  +A
Sbjct: 940  RADVFGLSQLHQLRGRVGRGRDRAYAYFLYPPDKPLTETAHDRLATIAQHNDLGAGMAVA 999

Query: 622  EEDLKQRKEGEILGIKQSG 640
             +DL+ R  G +LG +QSG
Sbjct: 1000 MKDLEIRGAGNLLGGEQSG 1018


>gi|317011657|gb|ADU85404.1| ATP-dependent DNA helicase RecG [Helicobacter pylori SouthAfrica7]
          Length = 621

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 176/551 (31%), Positives = 273/551 (49%), Gaps = 52/551 (9%)

Query: 104 LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP 163
           L F+  +    N F  G  + + GK+++             F+ +  +N P I   +   
Sbjct: 74  LVFFNYSAFYYNQFKIGESLFIYGKLEQSS-----------FNQAYIINTPKILKEFG-- 120

Query: 164 TGLSVDLFKKI-----IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
            G+S+ LFKK+     I E L  L  L E ++K+ +++     + E F     P   KDF
Sbjct: 121 -GISL-LFKKVKNHKKIQENLQSLLSL-ENLKKEGIKESIAHLLLEIF--FPTPHFLKDF 175

Query: 219 EW--TSPAR--ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           E   T P++    L Y E+L     L   + QF  +I  P N E   A   + ++PF  T
Sbjct: 176 ETNKTFPSQHLNALKYIEMLFYMKNLERKKLQFNAKIVCPNNSERLKA--FIASLPFQLT 233

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  ILA
Sbjct: 234 NDQQNAIKEIQNDLTSPIACKRLIVGDVGCGKTMVILASMVLAYP--NKTLLMAPTSILA 291

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +Q Y    K+      +  ++ GN  + H     E+I H    ++IGT AL  D     +
Sbjct: 292 KQLYNEALKFLPPYFEVELLLGGNHKKNH---LFEKITH----VVIGTQALLFDKRDLNE 344

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L     +  + I E
Sbjct: 345 FALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTMIRE 404

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  +  
Sbjct: 405 IPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGASFW 463

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            + F   +    G+  D +KE V++ F+     +L+ATT+IEVGI +   S+++I   E 
Sbjct: 464 QKRF-KKVYTTSGQ--DKNKEEVIEEFRE-CGSILLATTLIEVGISLPRLSVMVILAPER 519

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
            GLA LHQLRGRV R      C L       +    RL    +  DGF IAE DL+ RK 
Sbjct: 520 LGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFKIAELDLEYRKS 575

Query: 631 GEIL-GIKQSG 640
           G++L G +QSG
Sbjct: 576 GDLLQGGEQSG 586


>gi|290959824|ref|YP_003491006.1| transcriptional-repair coupling factor [Streptomyces scabiei 87.22]
 gi|260649350|emb|CBG72465.1| putative transcriptional-repair coupling factor [Streptomyces
           scabiei 87.22]
          Length = 1177

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 149/433 (34%), Positives = 234/433 (54%), Gaps = 27/433 (6%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 575 DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGADTPWQRELEDAFPYAETPDQ 631

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 632 LTTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 691

Query: 338 Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           +  F ++Y+Q   + V  ++        +  LE +  G   I+IGTH LF    ++  L 
Sbjct: 692 FGTFSERYSQ-FPVNVRALSRFQTDTEAKGTLEGLREGAVDIVIGTHRLFSSETKFKDLG 750

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 751 LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 810

Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
           P+ T + P    +I   I R   +L EG + ++I  ++E  ++  S  R +V        
Sbjct: 811 PVLTFVGPYEEKQIGAAIRR--ELLREG-QVFYIHNRVESIDRAASRLREIVPE------ 861

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  + FG
Sbjct: 862 ---ARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDTFG 918

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
           L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 919 LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 978

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +QSG
Sbjct: 979 RGAGNLLGGEQSG 991


>gi|308185293|ref|YP_003929426.1| ATP-dependent DNA helicase RecG [Helicobacter pylori SJM180]
 gi|308061213|gb|ADO03109.1| ATP-dependent DNA helicase RecG [Helicobacter pylori SJM180]
          Length = 623

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 150/442 (33%), Positives = 227/442 (51%), Gaps = 35/442 (7%)

Query: 212 PRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           P   KDFE    + S     L Y E+L     L   + QF  +I  P N E   A   + 
Sbjct: 169 PHFVKDFETNKNFPSQHLNALKYIEMLFYMKNLERKKLQFGAKIACPNNSERLKA--FIA 226

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF  T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++M
Sbjct: 227 SLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLM 284

Query: 328 APIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AP  ILA+Q Y    +F+  Y +     VE++ G      R+K    +     H++IGT 
Sbjct: 285 APTSILAKQLYNEALKFLPPYFE-----VELLLG----GSRKKRSNHLFETITHVVIGTQ 335

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTS 439
           AL  D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L  
Sbjct: 336 ALLFDKRDLDEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAK 395

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  
Sbjct: 396 SAFVKTTIIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIP 454

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           + S+ E  +   + F   +    G+  D +KE V++ F+     +L+ATT+IEVGI +  
Sbjct: 455 YLSLSEGASFWQKRF-KKVYTTSGQ--DKNKEEVIEEFRE-LGSILLATTLIEVGISLPR 510

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            S+++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF 
Sbjct: 511 LSVMVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFK 566

Query: 620 IAEEDLKQRKEGEIL-GIKQSG 640
           IAE DL+ RK G++L G +QSG
Sbjct: 567 IAELDLEYRKSGDLLQGGEQSG 588


>gi|315585905|gb|ADU40286.1| DNA helicase RecG [Helicobacter pylori 35A]
          Length = 621

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 188/619 (30%), Positives = 290/619 (46%), Gaps = 72/619 (11%)

Query: 44  LLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           LL Y P  + D    +H+   +S + E  I+    Y      F   KR  YK L      
Sbjct: 20  LLVYTPKGYKDLNLLKHFELGLSGVLEVDILDKRNYAKVLKIFAYSKRF-YKNLE----- 73

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
               L F+  +    N F  G  + + GK+++             F+ +  +N P I   
Sbjct: 74  ----LVFFNYSAFHYNQFKTGESLFIYGKLEQSS-----------FNQAYIINTPKILTE 118

Query: 160 YSLPTGLSVDLFKKI-----IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           +    G    +FKK+     I E L +L  L E ++K+ +++     + E F     P  
Sbjct: 119 F----GKISLIFKKVKNHKKIQENLQKLISL-ENLKKEGIKENIAHLLLEIF--FPTPHF 171

Query: 215 AKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            KDFE    + S     L Y E+      L   + QF  +I  P N E    +  + ++P
Sbjct: 172 VKDFETHKNFPSQHLNALKYIEMFFYMKNLESKKLQFSAKIACPNNSER--LKAFITSLP 229

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AIK I  D++      R++ GDVG GKT+V L +M  A     + ++MAP 
Sbjct: 230 FKLTNDQQNAIKAIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLMAPT 287

Query: 331 GILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            ILA+Q Y    +F+  Y +     VE++ G   +       E I H    ++IGT AL 
Sbjct: 288 SILAKQLYNEALKFLPPYFE-----VELLLGGSYKKRSNHLFETITH----VVIGTQALL 338

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGD 442
            D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L     
Sbjct: 339 FDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGHKPHSLQFSATPIPRTLALAKSAF 398

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S
Sbjct: 399 VKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLS 457

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E  +   + F   +    G+  D +KE V++ F+     +L+ATT+IEVGI +   S+
Sbjct: 458 LSEGASFWQKRF-KKVYTTSGQ--DKNKEEVIEEFREFGS-ILLATTLIEVGISLPRLSV 513

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF IAE
Sbjct: 514 MVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFKIAE 569

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DL+ RK G++L G +QSG
Sbjct: 570 LDLEYRKSGDLLHGGEQSG 588


>gi|302551963|ref|ZP_07304305.1| transcription-repair coupling factor [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469581|gb|EFL32674.1| transcription-repair coupling factor [Streptomyces
           viridochromogenes DSM 40736]
          Length = 1177

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 148/433 (34%), Positives = 234/433 (54%), Gaps = 27/433 (6%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 575 DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGADTPWQRELEDAFPYAETPDQ 631

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 632 LTTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 691

Query: 338 Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           +  F ++Y Q   + V  ++        +  LE +  G   I+IGTH LF    ++  L 
Sbjct: 692 FGTFSERYAQFP-VNVRALSRFQTDTEAKAVLEGLREGSVDIVIGTHRLFSSETKFKDLG 750

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 751 LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 810

Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
           P+ T + P    +I   I R   +L EG + ++I  ++E  ++  +  R +V        
Sbjct: 811 PVLTFVGPYEEKQIGAAIRR--ELLREG-QVFYIHNRVESIDRAAARLREIVPE------ 861

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 862 ---ARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFG 918

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
           L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 919 LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 978

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +QSG
Sbjct: 979 RGAGNLLGGEQSG 991


>gi|254388765|ref|ZP_05003997.1| transcriptional-repair coupling factor [Streptomyces clavuligerus
            ATCC 27064]
 gi|197702484|gb|EDY48296.1| transcriptional-repair coupling factor [Streptomyces clavuligerus
            ATCC 27064]
          Length = 1187

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 150/433 (34%), Positives = 234/433 (54%), Gaps = 27/433 (6%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 586  DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGPDTPWQRELEDAFPYAETPDQ 642

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 643  LSTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 702

Query: 338  Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            Y  F ++Y Q   + V  ++        +  LE +  G   I+IGTH LF    ++  L 
Sbjct: 703  YGTFSERYGQ-FPVNVRALSRFQTDTEAKATLEGLKDGAVDIVIGTHRLFSSETKFKDLG 761

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 762  LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 821

Query: 457  PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
            P+ T + P    +I   I R   +L EG + ++I  ++E  ++  +  R +V        
Sbjct: 822  PVLTFVGPYEEKQIGAAIRR--ELLREG-QVFYIHNRVESIDRAAARLREIVPE------ 872

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 873  ---ARIATAHGQMSESVLEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFG 929

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
            L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 930  LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 989

Query: 628  RKEGEILGIKQSG 640
            R  G +LG +QSG
Sbjct: 990  RGAGNLLGGEQSG 1002


>gi|294813058|ref|ZP_06771701.1| Transcriptional-repair coupling factor [Streptomyces clavuligerus
            ATCC 27064]
 gi|294325657|gb|EFG07300.1| Transcriptional-repair coupling factor [Streptomyces clavuligerus
            ATCC 27064]
          Length = 1206

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 150/433 (34%), Positives = 234/433 (54%), Gaps = 27/433 (6%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 605  DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGPDTPWQRELEDAFPYAETPDQ 661

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 662  LSTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 721

Query: 338  Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            Y  F ++Y Q   + V  ++        +  LE +  G   I+IGTH LF    ++  L 
Sbjct: 722  YGTFSERYGQFP-VNVRALSRFQTDTEAKATLEGLKDGAVDIVIGTHRLFSSETKFKDLG 780

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 781  LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 840

Query: 457  PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
            P+ T + P    +I   I R   +L EG + ++I  ++E  ++  +  R +V        
Sbjct: 841  PVLTFVGPYEEKQIGAAIRR--ELLREG-QVFYIHNRVESIDRAAARLREIVPE------ 891

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 892  ---ARIATAHGQMSESVLEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFG 948

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
            L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 949  LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 1008

Query: 628  RKEGEILGIKQSG 640
            R  G +LG +QSG
Sbjct: 1009 RGAGNLLGGEQSG 1021


>gi|326441399|ref|ZP_08216133.1| transcription-repair coupling factor [Streptomyces clavuligerus
           ATCC 27064]
          Length = 1176

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 150/433 (34%), Positives = 234/433 (54%), Gaps = 27/433 (6%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 575 DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGPDTPWQRELEDAFPYAETPDQ 631

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 632 LSTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 691

Query: 338 Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           Y  F ++Y Q   + V  ++        +  LE +  G   I+IGTH LF    ++  L 
Sbjct: 692 YGTFSERYGQFP-VNVRALSRFQTDTEAKATLEGLKDGAVDIVIGTHRLFSSETKFKDLG 750

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 751 LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 810

Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
           P+ T + P    +I   I R   +L EG + ++I  ++E  ++  +  R +V        
Sbjct: 811 PVLTFVGPYEEKQIGAAIRR--ELLREG-QVFYIHNRVESIDRAAARLREIVPE------ 861

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 862 ---ARIATAHGQMSESVLEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFG 918

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
           L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 919 LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 978

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +QSG
Sbjct: 979 RGAGNLLGGEQSG 991


>gi|317057762|ref|YP_004106229.1| transcription-repair coupling factor [Ruminococcus albus 7]
 gi|315450031|gb|ADU23595.1| transcription-repair coupling factor [Ruminococcus albus 7]
          Length = 1156

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 148/455 (32%), Positives = 223/455 (49%), Gaps = 21/455 (4%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           DL+ +   P   E  NI  N  K    EWT    +  A  + +A ++  L  ++Q  K  
Sbjct: 538 DLVSRYVGP--GEDGNIRLN--KLNSTEWTRTRNKVRAAVKDMAEELTKLYAQRQMAK-- 591

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G     +    +       +  T  Q  AI +I  DM ++  M R+L GDVG GKT VAL
Sbjct: 592 GYSFEPDDDWQRDFEERFDYQETDDQLRAINEIKGDMEKQTPMDRLLCGDVGFGKTEVAL 651

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A    V  G Q  I+AP  +LA QHY+   K  ++  + VE+++       +   +  +
Sbjct: 652 RAAFKCVVNGKQCAILAPTTVLAWQHYQTAIKRFEHFAVKVELLSRFRKPKEQSAIVREL 711

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G   +IIGTH L    +++  L L I+DE+ RFGV  + K  +      +L ++ATPI
Sbjct: 712 KRGTIDLIIGTHRLVSKDVEFKDLGLAIIDEEQRFGVAHKEKFKENHPGVDILTLSATPI 771

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICP 490
           PRTL +   G  D+S I E P  R PI+T +I  N  D VI + +   L  G + Y+I  
Sbjct: 772 PRTLNMALSGIRDMSVIEEPPMDRHPIQTYVIEHN--DGVILQAITKELRRGGQVYYIHN 829

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +I    ++  R+V    NS+ +   + I   HG+M + +   +          +L+ TT+
Sbjct: 830 RI----DTILRTVDRLQNSIPD---ARIGYAHGQMDEKELSEIWRQVVEHEIDILVCTTL 882

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRL 608
           IE GIDV + + +IIE+A+  GL+QLHQLRGRVGR    +     +     L++ +  RL
Sbjct: 883 IETGIDVPNVNTLIIEDADRLGLSQLHQLRGRVGRSNRRAFAYFTFKRGKVLNEIASKRL 942

Query: 609 SVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
             ++       GF IA  DL+ R  G IL  KQ G
Sbjct: 943 QAIREFTQFGSGFHIAMRDLEIRGAGSILSAKQHG 977


>gi|302534880|ref|ZP_07287222.1| transcription-repair coupling factor [Streptomyces sp. C]
 gi|302443775|gb|EFL15591.1| transcription-repair coupling factor [Streptomyces sp. C]
          Length = 1179

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 149/431 (34%), Positives = 234/431 (54%), Gaps = 23/431 (5%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 577 DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHTFGPDTPWQRELEDAFPYAETPDQ 633

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 634 LTTIAEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 693

Query: 338 Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           +  F ++Y+Q   + V+ ++        +  LE +  G   ++IGTH LF    ++  L 
Sbjct: 694 FGTFSERYSQ-FPVNVKALSRFQTDTESKATLEGLKEGSVDVVIGTHRLFSQETKFKDLG 752

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 753 LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 812

Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           P+ T + P    +I   I R   +L EG+     C  I  + ES  R+  +    + E  
Sbjct: 813 PVLTFVGPYEEKQIGAAIRR--ELLREGQ-----CFYIHNRVESIDRAAAKLREIVPE-- 863

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+
Sbjct: 864 -ARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLS 922

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRK 629
           QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ R 
Sbjct: 923 QLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRG 982

Query: 630 EGEILGIKQSG 640
            G +LG +QSG
Sbjct: 983 AGNLLGGEQSG 993


>gi|289642495|ref|ZP_06474639.1| transcription-repair coupling factor [Frankia symbiont of Datisca
            glomerata]
 gi|289507669|gb|EFD28624.1| transcription-repair coupling factor [Frankia symbiont of Datisca
            glomerata]
          Length = 1238

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/378 (34%), Positives = 210/378 (55%), Gaps = 17/378 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF  T  Q SAI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 679  PFRETPDQLSAIEEVKADMRKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 738

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L QQH++   +      + V  ++     + ++  L+ ++ G   ++IGTH L   +
Sbjct: 739  TTLLVQQHFQMFSERYAAFPVNVRAMSRFNSASEQKAVLDGLSDGTVDVVIGTHRLLSST 798

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
             ++  L LVIVDE+ RFGV+ +  L +  TA  VL M+ATPIPRTL ++  G  ++S I 
Sbjct: 799  SRFKDLGLVIVDEEQRFGVEHKEYLKKMRTAVDVLTMSATPIPRTLEMSITGIRELSTID 858

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
              P  R PI T + P +         + +L EG + ++I  ++E  +   +  R +V   
Sbjct: 859  TPPEERHPILTFVGPSDNRQVAAAIRRELLREG-QVFFIHNRVESIDAAAARLRDLVPE- 916

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                    + +A  HG+M +   E VM +F      +L+ TT++E G+D+ +A+ +++E 
Sbjct: 917  --------ARVATAHGQMGEDALEQVMVAFWEKKFDVLVCTTIVESGLDISNANTLVVER 968

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622
            A+ FGL+QLHQLRGRVGRG E +    LY P  PL++ ++ RL+ +    D   G  +A 
Sbjct: 969  ADVFGLSQLHQLRGRVGRGRERAYAYFLYPPDKPLTETAHDRLATIAQHSDLGAGMAVAM 1028

Query: 623  EDLKQRKEGEILGIKQSG 640
            +DL+ R  G +LG +QSG
Sbjct: 1029 KDLEIRGAGNLLGGEQSG 1046


>gi|237752073|ref|ZP_04582553.1| transcription-repair coupling factor [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229376640|gb|EEO26731.1| transcription-repair coupling factor [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 1011

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/380 (32%), Positives = 210/380 (55%), Gaps = 25/380 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T+ Q  A+ +I +D+S    M R+L GDVG GKT VA+ AM  A  +G Q+ ++ P 
Sbjct: 496 FHYTEDQTQAVNEIFKDLSSGKVMDRLLSGDVGFGKTEVAMNAMFVAFLSGFQSAMIVPT 555

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH+  +K+        +  +   +    +++ L  + +G+ + ++GTHAL   S 
Sbjct: 556 TLLAYQHFNTLKERFVPFGFKLARLDRYVSTKEKKQILRDLKNGELNAVVGTHALL--SA 613

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L L++VDE+H+FGV+Q+ K+   +   H+L M+ATPIPRTL +       +S++  
Sbjct: 614 EFKNLALMVVDEEHKFGVKQKEKIKDLSQNIHLLSMSATPIPRTLNMALSHIKGLSELKT 673

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWI---CPQIEEKKESNFRSVVE 505
            P+ R+  +T +  ++   + E+I R    +  G + ++I      I +KKE   R +  
Sbjct: 674 PPSERQATRTFVKQLDDTLLKEIIMR---EMRRGGQMFYIHNSIATIRQKKEEILRVLP- 729

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                    T  IAI+H ++   + E ++  F  GT ++L+ T+++E GI + +A+ I++
Sbjct: 730 ---------TLKIAILHSQIPAQEAEDIVLEFAKGTYQILLCTSIVESGIHLPNANTILV 780

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLI 620
           +NA +FG+A LHQLRGRVGRG +   C LL      +++++  RL  L+       G  +
Sbjct: 781 DNANYFGIADLHQLRGRVGRGNKEGFCYLLIEDFESITEDAKKRLLALEKNSFLGSGGAL 840

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A  DL+ R  G +LG  QSG
Sbjct: 841 AYHDLEIRGGGNLLGEAQSG 860


>gi|229494982|ref|ZP_04388731.1| transcription-repair coupling factor [Rhodococcus erythropolis SK121]
 gi|229318076|gb|EEN83948.1| transcription-repair coupling factor [Rhodococcus erythropolis SK121]
          Length = 1208

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 199/377 (52%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 646  FTETIDQLTVISEVKADMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 705

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LAQQH +   +   +  + V  ++        ++ +  +A G+  I++GTH L Q  I
Sbjct: 706  TLLAQQHLQTFTERMASFPVKVRGLSRFTDAKDSKEIIAGMAEGEIDIVVGTHRLLQTGI 765

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 766  RWKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILT 825

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R PI T +       +V   ++  L    + +++  ++   +K     R +V    
Sbjct: 826  PPEERHPILTYVGAYAD-KQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKKIRELVPE-- 882

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + + + HG+M++   E  +  F      +L+ TT+IE G+D+ +A+ +I+E A
Sbjct: 883  -------ARVVVAHGQMNEDTLEKTVQGFWERDFDVLVCTTIIETGLDISNANTLIVERA 935

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
            +  GL+QLHQLRGRVGR  E      LY    PL++ +Y RL+ +    D   G  +A +
Sbjct: 936  DSLGLSQLHQLRGRVGRSRERGYAYFLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMK 995

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 996  DLEIRGAGNVLGAEQSG 1012


>gi|333026450|ref|ZP_08454514.1| putative transcriptional-repair coupling factor [Streptomyces sp.
           Tu6071]
 gi|332746302|gb|EGJ76743.1| putative transcriptional-repair coupling factor [Streptomyces sp.
           Tu6071]
          Length = 1181

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 146/433 (33%), Positives = 235/433 (54%), Gaps = 27/433 (6%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 579 DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGPDTPWQRELEDAFPYAETPDQ 635

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 636 LTTISEVKSDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQEGKQVAVLVPTTLLVQQH 695

Query: 338 YE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           +  F ++Y Q   + +  ++        +  LE +  G   ++IGTH LF    ++  L 
Sbjct: 696 FSTFSERYAQFP-VTIRALSRFQTDTEAKATLEGLRDGSVDLVIGTHRLFSSETKFKDLG 754

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 755 LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 814

Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
           P+ T + P +  +I   I R   +L EG + ++I  +++  ++  +  R+VV        
Sbjct: 815 PVLTFVGPYDEKQIGAAIRR--ELLREG-QVFYIHNRVDSIDRAAARLRAVVPE------ 865

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 866 ---ARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFG 922

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
           L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 923 LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 982

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +QSG
Sbjct: 983 RGAGNLLGGEQSG 995


>gi|226307788|ref|YP_002767748.1| transcription-repair coupling factor [Rhodococcus erythropolis PR4]
 gi|226186905|dbj|BAH35009.1| transcription-repair coupling factor [Rhodococcus erythropolis PR4]
          Length = 1229

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 199/377 (52%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 667  FTETIDQLTVISEVKADMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 726

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LAQQH +   +   +  + V  ++        ++ +  +A G+  I++GTH L Q  I
Sbjct: 727  TLLAQQHLQTFTERMASFPVKVRGLSRFTDAKDSKEIIAGMAEGEIDIVVGTHRLLQTGI 786

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I  
Sbjct: 787  RWKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILT 846

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFN 508
             P  R PI T +       +V   ++  L    + +++  ++   +K     R +V    
Sbjct: 847  PPEERHPILTYVGAYAD-KQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKKIRELVPE-- 903

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + + + HG+M++   E  +  F      +L+ TT+IE G+D+ +A+ +I+E A
Sbjct: 904  -------ARVVVAHGQMNEDTLEKTVQGFWERDFDVLVCTTIIETGLDISNANTLIVERA 956

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
            +  GL+QLHQLRGRVGR  E      LY    PL++ +Y RL+ +    D   G  +A +
Sbjct: 957  DSLGLSQLHQLRGRVGRSRERGYAYFLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMK 1016

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 1017 DLEIRGAGNVLGAEQSG 1033


>gi|313681446|ref|YP_004059184.1| ATP-dependent DNA helicase recg [Sulfuricurvum kujiense DSM 16994]
 gi|313154306|gb|ADR32984.1| ATP-dependent DNA helicase RecG [Sulfuricurvum kujiense DSM 16994]
          Length = 595

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/382 (35%), Positives = 208/382 (54%), Gaps = 27/382 (7%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +K ++ +PF+ T  Q++AI DI  D+  +N   R++ GDVGSGKT+V L ++   +    
Sbjct: 212 KKWIKTLPFALTTDQQNAIADIGSDLRGENAARRMIVGDVGSGKTMVILASVI--LMHPY 269

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           ++++MAP  ILA Q YE  +KY  N +I +      +  A ++  LE         IIGT
Sbjct: 270 RSILMAPTTILAAQLYEEAQKYLPNLRIAL------VTNATKKAPLEEF-----DFIIGT 318

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQR---LKLTQKATAPHVLLMTATPIPRTLVLTS 439
           HAL    +   +  LV+VDEQHRFG  QR    +LT   T+PH L  +ATPIPRT  +  
Sbjct: 319 HALLHRPLP--EAGLVMVDEQHRFGTAQRHALTRLTDNDTSPHYLQFSATPIPRTQAMID 376

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              ID+S I + P   K I T II  +    +++ ++  + +  +   + P +E+ +  +
Sbjct: 377 SAHIDVSLIVQTPFT-KNIMTRIIHKSDFSALLDHIRSEIKQNHQVLIVYPLVEQSEMID 435

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           ++S+ E      ++F  ++ + HG+  D +KE+V+ +F+     +L+ATTV+EVGI +  
Sbjct: 436 YQSIDEARGYWEKNF-ENVYVTHGK--DKEKEAVLMAFREKGA-ILLATTVVEVGISLPR 491

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            S ++I  AE  GL+ LHQLRGRV R      C  LY     KN   RL        GF 
Sbjct: 492 LSTVVIVGAERLGLSTLHQLRGRVSRTGLQGYC-YLYTNKSGKNE--RLESFSRCNSGFE 548

Query: 620 IAEEDLKQRKEGEIL-GIKQSG 640
           IA  DLK R  G++L G  QSG
Sbjct: 549 IAALDLKFRSSGDLLDGSIQSG 570


>gi|294629781|ref|ZP_06708341.1| transcription-repair coupling factor [Streptomyces sp. e14]
 gi|292833114|gb|EFF91463.1| transcription-repair coupling factor [Streptomyces sp. e14]
          Length = 1184

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 146/433 (33%), Positives = 234/433 (54%), Gaps = 27/433 (6%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 582 DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGADTPWQRELEDAFPYAETPDQ 638

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 639 LTTIAEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 698

Query: 338 Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           +  F ++Y Q   + V  ++        +  LE +  G   ++IGTH LF    ++  L 
Sbjct: 699 FGTFSERYAQ-FPVNVRALSRFQTDTEAKAVLEGLREGSVDVVIGTHRLFSSETKFKDLG 757

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 758 LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 817

Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
           P+ T + P    +I   + R   +L EG + ++I  ++E  ++  +  R +V        
Sbjct: 818 PVLTFVGPYEEKQIGAAVRR--ELLREG-QVFYIHNRVESIDRAAARLREIVPE------ 868

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 869 ---ARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFG 925

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
           L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 926 LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 985

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +QSG
Sbjct: 986 RGAGNLLGGEQSG 998


>gi|255327280|ref|ZP_05368354.1| transcription-repair coupling factor [Rothia mucilaginosa ATCC 25296]
 gi|255295560|gb|EET74903.1| transcription-repair coupling factor [Rothia mucilaginosa ATCC 25296]
          Length = 1249

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 143/443 (32%), Positives = 236/443 (53%), Gaps = 27/443 (6%)

Query: 210  HNPRKAK--DFEWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
             NP  +K    +W  + +R R A  E+ A  + L   R+  +   G     +    +++ 
Sbjct: 630  ENPSLSKMGGSDWAKTKSRARKAVKEIAADLVKLYSARQASR---GHAFAADTPWQRELE 686

Query: 267  RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             + P++ T  Q +AI ++ +DM ++  M R++ GDVG GKT VA+ A   AV+ G Q  +
Sbjct: 687  ESFPYNETPDQLTAIHEVKEDMEKEIPMDRLISGDVGFGKTEVAVRAAFKAVQDGKQVAV 746

Query: 327  MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            + P  +LAQQHYE   +      + + +++        R+  E IA G   ++IGTH + 
Sbjct: 747  LVPTTLLAQQHYETFSERFSGFPVKIRVLSRFQKAKETRQITEEIASGAVDVVIGTHRIL 806

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
             DS+ +  L LVI+DE+ RFGV+ + KL Q  T   VL M+ATPIPRTL ++  G  + S
Sbjct: 807  SDSVVFKDLGLVIIDEEQRFGVEHKEKLKQMRTNVDVLAMSATPIPRTLEMSLTGIRETS 866

Query: 447  KITEKPAGRKPIKTVIIPINRIDEVIERL--KVVLSEGKKAYWICPQIEEKKESNFRSVV 504
             +   P  R P+ T + P  R D  I     + ++ EG + +++  ++     ++   V 
Sbjct: 867  TLATAPEERHPVLTFVGP--RTDSQITAAIRRELMREG-QVFFVHNRV-----ADIDDVA 918

Query: 505  ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                 L     + IA  HGRMS+   E ++  F      +L+ TT++E G+D+ +A+ +I
Sbjct: 919  AEIGKLVPE--ARIATAHGRMSESRLEQIIVDFWERRFDVLVCTTIVETGLDISNANTLI 976

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLSVLKNTED---G 617
            +++A+++GL+QLHQLRGRVGRG E +    LY  P+ K     ++ RL  +    +   G
Sbjct: 977  VDHAQNYGLSQLHQLRGRVGRGRERAYAYFLY--PVDKTLGEIAHERLKAVATHNELGAG 1034

Query: 618  FLIAEEDLKQRKEGEILGIKQSG 640
              +A +DL+ R  G +LG +QSG
Sbjct: 1035 LQLAMKDLEIRGAGNLLGGEQSG 1057


>gi|15834748|ref|NP_296507.1| transcription-repair coupling factor [Chlamydia muridarum Nigg]
 gi|270284915|ref|ZP_06194309.1| transcription-repair coupling factor [Chlamydia muridarum Nigg]
 gi|270288942|ref|ZP_06195244.1| transcription-repair coupling factor [Chlamydia muridarum Weiss]
 gi|7190159|gb|AAF39002.1| transcription-repair coupling factor [Chlamydia muridarum Nigg]
          Length = 1080

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/390 (33%), Positives = 201/390 (51%), Gaps = 19/390 (4%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G+   K   + P+  T  Q  AI  I  DM     M R++ GD G GKT + + A   AV
Sbjct: 543 GEEVIKFAESFPYEETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAV 602

Query: 319 EAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             G  Q ++M P  ILA QH+E   +      I + +++        +K LE +A G+  
Sbjct: 603 CDGQKQVIVMVPTTILANQHFETFSQRMAGLPITIGLLSRFSQGKAMKKTLEDVAQGRID 662

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH +   SI+++   L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL L
Sbjct: 663 ILIGTHKVINKSIEFHNPGLLIIDEEQRFGVKAKDALKERYPTIDCLTVSATPIPRTLYL 722

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE-RLKVVLSEGKKAYWICPQIEE-- 494
           +  G  D+S IT  P  R P+ T +  +   +E +   ++  L  G + Y I  +IE   
Sbjct: 723 SLSGARDLSLITMPPLDRLPVSTFV--MEHTEETLSAAIRHELLRGGQVYVIHNRIEGIF 780

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           +     R+++           + I + HG+M   +  ++   FK     +L+AT +IE G
Sbjct: 781 RLGETIRTLIPE---------ARIGVAHGQMHSDELANIFYKFKTQQTNVLVATALIENG 831

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLK 612
           ID+ +A+ I+I++A+ FG+A L+Q++GRVGR  + + C  L  +   LS  +  RL  L 
Sbjct: 832 IDIPNANTILIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPASKRLEALN 891

Query: 613 NTE--DGFLIAEEDLKQRKEGEILGIKQSG 640
             E   G  IA  DL+ R  G ILG  QSG
Sbjct: 892 KQEYGGGMKIALHDLEIRGAGNILGTDQSG 921


>gi|29830092|ref|NP_824726.1| transcriptional-repair coupling factor [Streptomyces avermitilis
           MA-4680]
 gi|29607202|dbj|BAC71261.1| putative transcriptional-repair coupling factor [Streptomyces
           avermitilis MA-4680]
          Length = 1176

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 147/433 (33%), Positives = 234/433 (54%), Gaps = 27/433 (6%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 575 DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGSDTPWQRELEDAFPYAETPDQ 631

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 632 LTTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 691

Query: 338 Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           +  F  +Y+Q   + V  ++        +  LE +  G   ++IGTH LF    ++  L 
Sbjct: 692 FGTFGDRYSQ-FPVNVRALSRFQTDTEAKATLEGLREGSVDVVIGTHRLFSSETKFKDLG 750

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 751 LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 810

Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
           P+ T + P    +I   I R   +L EG + ++I  ++E  ++  +  R +V        
Sbjct: 811 PVLTFVGPYEERQIGAAIRR--ELLREG-QVFYIHNRVESIDRAAARLREIVPE------ 861

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 862 ---ARIATAHGQMSEQTLEQVVVDFWEKKYDVLVSTTIVESGIDISNANTLIVERGDNFG 918

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
           L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 919 LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 978

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +QSG
Sbjct: 979 RGAGNLLGGEQSG 991


>gi|318060504|ref|ZP_07979227.1| transcription-repair coupling factor [Streptomyces sp. SA3_actG]
 gi|318077247|ref|ZP_07984579.1| transcription-repair coupling factor [Streptomyces sp. SA3_actF]
          Length = 1178

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 146/433 (33%), Positives = 235/433 (54%), Gaps = 27/433 (6%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 576 DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGPDTPWQRELEDAFPYAETPDQ 632

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 633 LTTISEVKSDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQEGKQVAVLVPTTLLVQQH 692

Query: 338 YE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           +  F ++Y Q   + +  ++        +  LE +  G   ++IGTH LF    ++  L 
Sbjct: 693 FSTFSERYAQFP-VTIRALSRFQSDTEAKATLEGLRDGSVDLVIGTHRLFSSETKFKDLG 751

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 752 LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 811

Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
           P+ T + P +  +I   I R   +L EG + ++I  +++  ++  +  R+VV        
Sbjct: 812 PVLTFVGPYDEKQIGAAIRR--ELLREG-QVFYIHNRVDSIDRAAARLRAVVPE------ 862

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 863 ---ARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFG 919

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
           L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 920 LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 979

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +QSG
Sbjct: 980 RGAGNLLGGEQSG 992


>gi|311745141|ref|ZP_07718926.1| transcription-repair coupling factor [Algoriphagus sp. PR1]
 gi|126577659|gb|EAZ81879.1| transcription-repair coupling factor [Algoriphagus sp. PR1]
          Length = 1117

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/397 (30%), Positives = 199/397 (50%), Gaps = 17/397 (4%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G P   +  +  ++  +  +  T  Q  A +D+  DM +   M R++ GDVG GKT VA+
Sbjct: 540 GYPFTKDSVLQVELESSFIYEDTPDQALATEDVKADMEKSYPMDRLVCGDVGFGKTEVAI 599

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV    Q  ++ P  ILA QHY+   +  +N  + VE I         ++ + ++
Sbjct: 600 RAAFKAVNDRKQVAVLVPTTILAMQHYQTFSERLENLPVKVEYINRFRTAKQIKEIISQV 659

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G+  I++GTH +    I +  L L+++DE+ +FGV+ + +L        VL +TATPI
Sbjct: 660 KSGEIDILVGTHKIVNKDIVFRDLGLLVIDEEQKFGVKVKDQLKNLRVNVDVLTLTATPI 719

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL  + +G  D+S I   P  R+P+ T +      + + + +   L  G + +++  +
Sbjct: 720 PRTLHFSLMGARDLSVIATPPPNRQPVTTEVATFQE-ETIRDAVAYELRRGGQVFFVHNR 778

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAII--HGRMSDIDKESVMDSFKNGTCKLLIATT 549
           + E         ++   +L         +I  HG+M     E +M  F +    +L++T 
Sbjct: 779 VGE---------IDSIANLIMKLVPDARVIGAHGQMDGKKLEKIMVDFIHHEYDVLVSTN 829

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-----PLSKNS 604
           +IE G+D+ +A+ III  A  FGL+ LHQ+RGRVGR  + + C LL  P     P ++  
Sbjct: 830 IIESGLDIPNANTIIINRAHMFGLSDLHQMRGRVGRSNKKAFCFLLTQPMSGLTPEARKR 889

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
              L    +  DGF +A +DL  R  G +LG +QSG 
Sbjct: 890 LQTLEEFSDLGDGFKVAMKDLDIRGAGNLLGAEQSGF 926


>gi|302519736|ref|ZP_07272078.1| transcription-repair coupling factor [Streptomyces sp. SPB78]
 gi|302428631|gb|EFL00447.1| transcription-repair coupling factor [Streptomyces sp. SPB78]
          Length = 1178

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 146/433 (33%), Positives = 235/433 (54%), Gaps = 27/433 (6%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 576 DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGPDTPWQRELEDAFPYAETPDQ 632

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 633 LTTISEVKSDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQEGKQVAVLVPTTLLVQQH 692

Query: 338 YE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           +  F ++Y Q   + +  ++        +  LE +  G   ++IGTH LF    ++  L 
Sbjct: 693 FSTFSERYAQFP-VTIRALSRFQSDTEAKATLEGLRDGSVDLVIGTHRLFSSETKFKDLG 751

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 752 LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 811

Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
           P+ T + P +  +I   I R   +L EG + ++I  +++  ++  +  R+VV        
Sbjct: 812 PVLTFVGPYDEKQIGAAIRR--ELLREG-QVFYIHNRVDSIDRAAARLRAVVPE------ 862

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 863 ---ARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFG 919

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
           L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 920 LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 979

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +QSG
Sbjct: 980 RGAGNLLGGEQSG 992


>gi|257459507|ref|ZP_05624616.1| ATP-dependent DNA helicase RecG [Campylobacter gracilis RM3268]
 gi|257442932|gb|EEV18066.1| ATP-dependent DNA helicase RecG [Campylobacter gracilis RM3268]
          Length = 986

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 145/381 (38%), Positives = 207/381 (54%), Gaps = 40/381 (10%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L ++PF PT+ Q SAIKDI  D+       R++ GDVGSGKTLV L   +AA+     + 
Sbjct: 602 LASLPFEPTRDQLSAIKDIASDLQSPLARRRVVMGDVGSGKTLVIL--ASAAMNYPRISY 659

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH-GQAHIIIGTHA 384
           +MAP  ILA+Q Y   ++     QI V ++          K+ +R  +   AH+IIGTHA
Sbjct: 660 LMAPTSILAEQIYAEARRLLP-PQIKVLLV----------KSGDREPNFADAHLIIGTHA 708

Query: 385 LFQDSIQYYKLI---LVIVDEQHRFGVQQRLK---LTQKAT-APHVLLMTATPIPRTLVL 437
           L      Y++L    L++VDEQHRFG  QR K   LT+      H +  +ATPIPRTL +
Sbjct: 709 LL-----YHELAPSNLIMVDEQHRFGSNQREKIARLTENGEFRAHFIQFSATPIPRTLSM 763

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                +  S + + P   K IKT I+  +     ++ L+  L+ G +A  + P +++ + 
Sbjct: 764 IQSELVSFSFLKQLPF-EKRIKTKILQNDGFTGFMQDLRRELAAGNQAIIVYPLVQQSES 822

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S ++S+ E        F + + I HG  SD DKE ++  F++   +LLI TT++EVGI +
Sbjct: 823 SVYQSLEEAAPFWKAQF-ADVMITHG--SDKDKEEILRRFRD-DGRLLITTTIVEVGISL 878

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL---LYHPPLSKNSYTRLSVLKNT 614
              S+I+I  AE  GLA LHQLRGRVGR  +   C L   L  PP       RL     T
Sbjct: 879 PRLSVILIVGAERMGLASLHQLRGRVGRKGQAGRCYLYTKLKSPP------QRLREFAAT 932

Query: 615 EDGFLIAEEDLKQRKEGEILG 635
            DGF +A  DLK R+ G++LG
Sbjct: 933 LDGFKVANIDLKNRQGGDLLG 953


>gi|239930800|ref|ZP_04687753.1| transcriptional-repair coupling factor [Streptomyces ghanaensis
           ATCC 14672]
 gi|291439165|ref|ZP_06578555.1| transcriptional-repair coupling factor [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342060|gb|EFE69016.1| transcriptional-repair coupling factor [Streptomyces ghanaensis
           ATCC 14672]
          Length = 1185

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 147/433 (33%), Positives = 232/433 (53%), Gaps = 27/433 (6%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 583 DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGADTPWQRELEDAFPYAETPDQ 639

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 640 LTTIAEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 699

Query: 338 Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           +  F  +Y Q   + V  ++        +  LE +  G   ++IGTH LF    ++  L 
Sbjct: 700 FGTFGDRYAQFP-VTVRALSRFQTDTEAKAVLEGLREGSVDVVIGTHRLFSSETKFKDLG 758

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 759 LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 818

Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
           P+ T + P    +I   I R   +L EG + ++I  ++E  ++  +  R +V        
Sbjct: 819 PVLTFVGPYEEKQIGAAIRR--ELLREG-QVFYIHNRVESIDRAAARLRDIVPE------ 869

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  + FG
Sbjct: 870 ---ARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDTFG 926

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
           L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 927 LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 986

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +QSG
Sbjct: 987 RGAGNLLGGEQSG 999


>gi|154175477|ref|YP_001407964.1| ATP-dependent DNA helicase RecG [Campylobacter curvus 525.92]
 gi|112803336|gb|EAU00680.1| molybdenum-pterin binding protein [Campylobacter curvus 525.92]
          Length = 604

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 137/380 (36%), Positives = 199/380 (52%), Gaps = 27/380 (7%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+N+PF+PT  Q +AI DI  D++      R++ GDVGSGKTLV L A  +     G AV
Sbjct: 221 LKNLPFAPTNDQLNAINDIRTDLAHGEAKRRVVMGDVGSGKTLVILAAALSVYP--GCAV 278

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  IL +Q Y   K+       ++ + +G+          + +     + IIGTH L
Sbjct: 279 LMAPTSILCEQIYNEAKRLLPGFMNVMLVKSGD----------KNLDFSGVNFIIGTHVL 328

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLG 441
               +    + LV+VDEQHRFG  QR K+ Q         + +  +ATPIPRTL L    
Sbjct: 329 LYQELP--PVPLVMVDEQHRFGSSQRGKIEQMTRNGDLHANFVQFSATPIPRTLSLIQSS 386

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
            ++ S + + P   K IKT I+       ++  +K  +S G++   + P +E  +  N++
Sbjct: 387 LVEFSFLKQMPF-EKHIKTQILKPADFASLLAHIKAQISSGRQTIIVYPLVEGSENLNYQ 445

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           S+ E      ++F  ++ I HG+  D +KE ++  FK     +L++TTV+EVGI +    
Sbjct: 446 SLSEAQGFWLQNF-KNVFITHGK--DREKEEILRQFKQ-RGDILLSTTVVEVGISLPRLG 501

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            I+I  AE  GLA LHQLRGRVGR      C L       KN   RL    +T DGF IA
Sbjct: 502 TIVIVGAERLGLATLHQLRGRVGRNGGSGFCFLFTK---LKNPPERLVEFCSTTDGFEIA 558

Query: 622 EEDLKQRKEGEIL-GIKQSG 640
           + DLK R+ G+IL G  Q G
Sbjct: 559 QLDLKNRQSGDILNGTLQHG 578


>gi|328882973|emb|CCA56212.1| Transcription-repair coupling factor [Streptomyces venezuelae ATCC
            10712]
          Length = 1221

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 147/433 (33%), Positives = 235/433 (54%), Gaps = 27/433 (6%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +WT + AR + A  E+ A  I L   R         P   +    +++    P++ T  Q
Sbjct: 620  DWTKTKARAKKAVKEIAADLIKLYSARMAAPGHAFAP---DTPWQRELEDAFPYAETPDQ 676

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 677  LSTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 736

Query: 338  Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            +  F ++Y+Q   + V  ++        +  LE +  G   ++IGTH LF    ++  L 
Sbjct: 737  FGTFSERYSQ-FPVKVRALSRFQTDTEAKATLEGMREGSVDVVIGTHRLFASETKFKDLG 795

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 796  LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 855

Query: 457  PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
            P+ T + P    +I   I R   +L EG + ++I  +++  ++  +  R +V        
Sbjct: 856  PVLTFVGPYEEKQIGAAIRR--ELLREG-QVFYIHNRVDSIDRAAARLREIVPE------ 906

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 907  ---ARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFG 963

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
            L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 964  LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 1023

Query: 628  RKEGEILGIKQSG 640
            R  G +LG +QSG
Sbjct: 1024 RGAGNLLGGEQSG 1036


>gi|194333600|ref|YP_002015460.1| transcription-repair coupling factor [Prosthecochloris aestuarii
           DSM 271]
 gi|194311418|gb|ACF45813.1| transcription-repair coupling factor [Prosthecochloris aestuarii
           DSM 271]
          Length = 1120

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 133/419 (31%), Positives = 226/419 (53%), Gaps = 25/419 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q  AI+++ +DM     M R++ GD G GKT +A+ A   AVE+  Q  ++ P 
Sbjct: 535 FDETPDQLKAIEEVKKDMQSPFPMDRLICGDAGFGKTEIAMRAAFKAVESSKQVAVLTPT 594

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH E   +  +N  + + +++  + ++ ++K +  ++ G   I+IGTH L    +
Sbjct: 595 TILAHQHMETFTRRFENFPVNIAVLSRFVSKSDQKKIVHDLSKGLIDIVIGTHRLVSKDV 654

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+++DE+  FGV  + KL Q   +   L M+ATPIPRTL  + LG  D+S ++ 
Sbjct: 655 VFQDLGLLVIDEEQHFGVSVKEKLRQTFPSVDTLTMSATPIPRTLQFSMLGARDLSIVST 714

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI---EEKKESNFRSVVERF 507
            P  R+P++T+I   +  D +   ++  ++   + + +  +I   EE K+          
Sbjct: 715 PPKNRQPVETMITTFD-TDLLQSAIRTEINRKGQVFVLHNRIAGLEEMKQ---------- 763

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +L E      +A  HG+M   + E++M  F      +LI+T++I  G+D+ +A+ III 
Sbjct: 764 -TLQELVPGVRMAYAHGQMPTAELENIMMDFITHELDVLISTSIIGSGLDISNANTIIIN 822

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN-TE--DGFLIA 621
            A+ FGL+ L+QLRGRVGR +  +   L+  P   L +++  RL+V+++ TE   GF IA
Sbjct: 823 RADMFGLSDLYQLRGRVGRSDRKAYSYLITPPIQTLKQDAIQRLAVIESFTELGSGFNIA 882

Query: 622 EEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
             DL  R  G +LG +QSG      F + Q  L +++ E+ +  A   L  D D +++R
Sbjct: 883 MRDLDIRGAGNLLGSEQSGAIHELGFNLYQKLLEEAVAEL-KTGAFSSLFSDNDQSTIR 940


>gi|311113149|ref|YP_003984371.1| transcription-repair coupling factor [Rothia dentocariosa ATCC 17931]
 gi|310944643|gb|ADP40937.1| transcription-repair coupling factor [Rothia dentocariosa ATCC 17931]
          Length = 1229

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 136/429 (31%), Positives = 233/429 (54%), Gaps = 19/429 (4%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W  + +R R A  E+ A  + L   R+  +   G   + +    +++  + P++ T  Q
Sbjct: 620  DWAKTKSRARKAVKEIAADLVKLYSARQASR---GHAFSEDTPWQRELEESFPYNETPDQ 676

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +AI ++  DM ++  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH
Sbjct: 677  LTAIHEVKADMEKEIPMDRLISGDVGFGKTEVAIRAAFKAVQDGKQVAVLVPTTLLAQQH 736

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            +E   +      I +++++        R  +E IA G   ++IGTH +  +++++  L L
Sbjct: 737  FETFTERFSGFPIKIKVLSRFQKAKETRAIVEDIASGSIDVVIGTHRILSENVKFKDLGL 796

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            V++DE+ RFGV+ + KL Q  T   VL M+ATPIPRTL ++  G  + S +   P  R P
Sbjct: 797  VVIDEEQRFGVEHKEKLKQMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATAPEERHP 856

Query: 458  IKTVIIPINRID-EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            + T + P  R D ++   ++  L    + +++  ++     +N  +V      L     +
Sbjct: 857  VLTFVGP--RTDAQITAAIRRELMREGQVFFVHNRV-----ANIDTVAAEIGKLVPE--A 907

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             IA  HGRMS+   E ++  F      +L+ TT++E G+D+ +A+ +I++NA+++GL+QL
Sbjct: 908  RIATAHGRMSESRLEQIIVDFWERRFDVLVCTTIVETGLDISNANTLIVDNAQNYGLSQL 967

Query: 577  HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGRG E +    LY     L + ++ RL  +    +   G  +A +DL+ R  G
Sbjct: 968  HQLRGRVGRGRERAYAYFLYPTDKSLGEVAHKRLKAVATHNELGAGLQLAMKDLEIRGAG 1027

Query: 632  EILGIKQSG 640
             +LG +QSG
Sbjct: 1028 NLLGGEQSG 1036


>gi|218249390|ref|YP_002375126.1| transcription-repair coupling factor [Borrelia burgdorferi ZS7]
 gi|218164578|gb|ACK74639.1| transcription-repair coupling factor [Borrelia burgdorferi ZS7]
          Length = 1125

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 208/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P
Sbjct: 580 PYDETPDQIRAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNAETRILKELKIGKIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE      ++++ER 
Sbjct: 760 IPPQNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERL 814

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ + + III N
Sbjct: 815 TPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNVNTIIINN 869

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA 
Sbjct: 870 ANKFGLAQLYQLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAM 929

Query: 623 EDLKQRKEGEILGIKQSG 640
           +D++ R  G +LG +Q G
Sbjct: 930 KDMEIRGVGNLLGREQHG 947


>gi|302530260|ref|ZP_07282602.1| transcription-repair coupling factor [Streptomyces sp. AA4]
 gi|302439155|gb|EFL10971.1| transcription-repair coupling factor [Streptomyces sp. AA4]
          Length = 1192

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 210/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF+ T  Q +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 631 PFTETNDQLAAIDEVKADMERGVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 690

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQH     +  ++  + ++ ++    +A   + LE++A G+  I+IGTH L Q  
Sbjct: 691 TTLLAQQHLNTFTERMRSFPVTIKGLSRFTHKAESDRILEQLADGEVDIVIGTHRLLQTG 750

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+Y  L LVIVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I 
Sbjct: 751 IRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTIL 810

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R PI T +   +  ++   + R   +L +G+  Y         + S+     +R 
Sbjct: 811 TPPEDRHPILTYVGAYDDKQVGAAVRR--ELLRDGQVFYV------HNRVSSIEKAAKRI 862

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L     + +   HG+M++   E ++  F      +L+ TT++E G+D+ +A+ +I+E 
Sbjct: 863 RELVPE--ARVVTAHGQMNEDKLEKIIQGFWENEYDVLVCTTIVETGLDISNANTLIVER 920

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAE 622
            +  GLAQLHQLRGRVGRG E      LY P  PL++ ++ RL+ + +NTE   G  +A 
Sbjct: 921 GDMLGLAQLHQLRGRVGRGRERGYAYFLYPPEAPLTETAHDRLATIAQNTELGAGMAVAM 980

Query: 623 EDLKQRKEGEILGIKQSG 640
           +DL+ R  G ILG +QSG
Sbjct: 981 KDLEIRGAGNILGAEQSG 998


>gi|307324345|ref|ZP_07603553.1| transcription-repair coupling factor [Streptomyces violaceusniger Tu
            4113]
 gi|306890076|gb|EFN21054.1| transcription-repair coupling factor [Streptomyces violaceusniger Tu
            4113]
          Length = 1236

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 146/433 (33%), Positives = 234/433 (54%), Gaps = 27/433 (6%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 635  DWTKTKARAKKAVKEIAADLIRLYSARMAAP---GHAFGADTPWQRELEDAFPYAETPDQ 691

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 692  LTTIAEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 751

Query: 338  Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            +  F ++Y Q   + V  ++        +  LE +  G   I+IGTH LF    ++  L 
Sbjct: 752  FGTFGERYGQFP-VNVRALSRFQTDTEAKAVLEGLKDGAVDIVIGTHRLFSSETKFKDLG 810

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            LV+VDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 811  LVVVDEEQRFGVEHKEQLKKLRANVDVLSMSATPIPRTLEMAVTGIREMSTITTPPEERH 870

Query: 457  PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
            P+ T + P    +I   I R   +L EG + ++I  ++E  ++  +  R +V        
Sbjct: 871  PVLTFVGPYEQKQIGAAIRR--ELLREG-QVFYIHNRVESIDRAAAKLREIVPE------ 921

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 922  ---ARIATAHGQMSETALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFG 978

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
            L+QLHQLRGRVGRG +      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 979  LSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 1038

Query: 628  RKEGEILGIKQSG 640
            R  G +LG +QSG
Sbjct: 1039 RGAGNLLGGEQSG 1051


>gi|317010106|gb|ADU80686.1| ATP-dependent DNA helicase RecG [Helicobacter pylori India7]
          Length = 621

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 188/619 (30%), Positives = 293/619 (47%), Gaps = 74/619 (11%)

Query: 44  LLFYHPSSFID----RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG 99
           LL Y P  + D    +H+   +S + E  I+    Y      F   KR  YK L      
Sbjct: 20  LLVYTPKGYKDLNLLKHFELGLSGVLEVDILEKRNYAKVLKIFAYSKRF-YKNLE----- 73

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
               L F+  +    N F  G  + + GK+++             F+ +  +N P I   
Sbjct: 74  ----LVFFNYSAFHHNQFKTGESLFIYGKLEQNS-----------FNQAYIINTPKILTE 118

Query: 160 YSLPTGLSVDLFKKI-----IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           +    G    +FKK+     + E L +L  L E ++K+ +++     + E F     P  
Sbjct: 119 F----GKISLIFKKVKNHKKMQENLQKLISL-ENLKKEGIKENIARLLLEIF--FPTPHF 171

Query: 215 AKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            KDFE    + S     L Y E+L     L   + QF  +I  P N E   A   + ++P
Sbjct: 172 VKDFETNKNFPSQHLNALKYIEMLFYMKNLERKKLQFNAKIACPNNSERLKA--FIASLP 229

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP 
Sbjct: 230 FKLTNDQQNAIKEIQSDLTSPIACKRLIVGDVGCGKTMVILASMVLAYP--NKTLLMAPT 287

Query: 331 GILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            ILA+Q Y    +F+  Y +     VE++ G      R+K    +     H++IGT AL 
Sbjct: 288 SILAKQLYNEALKFLPPYFE-----VELLLGE----SRKK--NHLFETITHVVIGTQALL 336

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGD 442
            D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L     
Sbjct: 337 FDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAF 396

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S
Sbjct: 397 VKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLS 455

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E  +   + F   +    G+  D +KE V++ F+  +  +L+ATT+IEVGI +   S+
Sbjct: 456 LSEGASFWQKRF-KKVYTTSGQ--DKNKEEVIEEFRE-SGSILLATTLIEVGISLPRLSV 511

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           +++   E  GLA LHQLRGRV R      C L       +    RL       DGF IAE
Sbjct: 512 MVVLAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFAEELDGFKIAE 567

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DL+ RK G++L G +QSG
Sbjct: 568 LDLEYRKSGDLLQGGEQSG 586


>gi|254780028|ref|YP_003058135.1| ATP-dependent DNA helicase RecG [Helicobacter pylori B38]
 gi|254001941|emb|CAX30198.1| ATP-dependent DNA helicase RecG [Helicobacter pylori B38]
          Length = 623

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 149/442 (33%), Positives = 225/442 (50%), Gaps = 35/442 (7%)

Query: 212 PRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           P   KDFE    + S     L Y E+L     L   + QF  +I    N E       + 
Sbjct: 169 PHFVKDFETNKNFPSQHLNALKYIEMLFYMKNLEHKKLQFGAKIACTNNSER--LDNFIA 226

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF  T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++M
Sbjct: 227 SLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYP--NKTLLM 284

Query: 328 APIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AP  ILA+Q Y    +F+  Y +     VE++ G   +       E I H    +IIGT 
Sbjct: 285 APTSILAKQLYNEALKFLPPYFE-----VELLLGGSYKKRSNHLFETITH----VIIGTQ 335

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTS 439
           AL  D     +  LVI DEQHRFG +QR +L + A++    PH L  +ATPIPRTL L  
Sbjct: 336 ALLFDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAK 395

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              +  + I E P   K I+T+++       V+E++   +++  +   + P + E ++  
Sbjct: 396 SAFVKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIP 454

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           + S+ E  +   + F   +    G+  D +KE V++ F+  +  +L+ATT+IEVGI +  
Sbjct: 455 YLSLSEGASFWQKRF-KKVYTTSGQ--DKNKEEVIEEFRE-SGSILLATTLIEVGISLPR 510

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            S+++I   E  GLA LHQLRGRV R      C L       +    RL    +  DGF 
Sbjct: 511 LSVMVILAPERLGLATLHQLRGRVSRNGLKGYCFLC----TIQEENERLEKFADELDGFK 566

Query: 620 IAEEDLKQRKEGEIL-GIKQSG 640
           IAE DL+ RK G++L G +QSG
Sbjct: 567 IAELDLEYRKSGDLLQGGEQSG 588


>gi|329122093|ref|ZP_08250701.1| transcription-repair-coupling factor [Dialister micraerophilus DSM
           19965]
 gi|327466900|gb|EGF12416.1| transcription-repair-coupling factor [Dialister micraerophilus DSM
           19965]
          Length = 1132

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 204/379 (53%), Gaps = 20/379 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q SA + I + M     M  +L GDVG GKT VA+ A+   V +G Q++++ P 
Sbjct: 581 YVETPDQLSATEKIKKSMESSTPMDMLLCGDVGFGKTEVAMRAVFKCVMSGYQSIVLCPT 640

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QH++   +      + V+++   +  + + K L  +  GQ  ++IGTH++   SI
Sbjct: 641 TVLASQHFKTFSERMNKFGVNVQLLNRFVKTSEKNKILSGLKSGQIDVLIGTHSVLSKSI 700

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
              +L L++VDE+ RFGV Q+ K     +   +L ++ATPIPRTL ++  G  D++ IT+
Sbjct: 701 NCRRLGLLVVDEEQRFGVFQKEKWKSLTSGIDILTLSATPIPRTLHMSLSGVRDMAAITQ 760

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R  ++T +I  N   + E + R K       + Y++  +IE        S+    +
Sbjct: 761 APQNRHAVQTYVIEYNEDIVKEAVLREK---ERNGQVYFVYNRIE--------SIDMMKD 809

Query: 509 SLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            L + F     I + +GRM   + E VM  F      +L+ TT+IE G+D  +A+ III 
Sbjct: 810 RLEKIFKGKVRIGVAYGRMKGSELEKVMFDFYQDKYDVLLCTTLIENGLDQPNANTIIIY 869

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIA 621
           +A+  GL+QL+Q++GRVGR ++I+     Y     LS+ +  RL+ ++  TE   GF IA
Sbjct: 870 DADFMGLSQLYQMKGRVGRSDKIAKAYFFYRKDKVLSEVAEKRLNTIREFTELGSGFKIA 929

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G +LG +Q G
Sbjct: 930 MRDLEIRGAGNLLGSEQHG 948


>gi|206889345|ref|YP_002248930.1| transcription-repair coupling factor [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741283|gb|ACI20340.1| transcription-repair coupling factor [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 1042

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/411 (31%), Positives = 219/411 (53%), Gaps = 17/411 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q K E G   + + +I +      P+  T+ Q+ AI  IL+ M +   M  +L 
Sbjct: 467 LIKLYAQRKTERGFIYSEDTEIHKNFDDFFPYEETEDQQKAIDAILKKMREPFPMEVLLC 526

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GD G GKT VA+ A   AV  G Q  ++ P  +L +QHY   KK  +   + +E ++   
Sbjct: 527 GDAGYGKTEVAMRASFRAVYDGKQVAVLVPTTLLCEQHYRTFKKRFEAFPVKIEYLSRFR 586

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            +   +K +E    G+  I+IGTH +    + ++ L L+I+DE+ +FGV  + K+ +K  
Sbjct: 587 SEKEIKKVIEDTKLGKVDILIGTHIIILKEVDFFDLGLLIIDEEQKFGVIHKEKIKEKYP 646

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKV 477
              ++ +TATPIPRTL +   G  DI  I   P  R  +KT +I  N   I E IE+   
Sbjct: 647 KVDLITITATPIPRTLQIGLSGLWDIFVIQTPPKERLAVKTFVIQENELIIKEAIEK--- 703

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            +  G + Y++  +I + +    +S +++   +     + I + HGRM +   + +M  F
Sbjct: 704 EIQRGGQIYFLHNRIHDIEL--VKSKIQKLVPM-----ARIGVAHGRMKEKMLDKIMLDF 756

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G   +L+ T++I  G+D+ + + III+ A+ FGL+ L+Q+RGRVGR    ++  L+  
Sbjct: 757 IYGKIDILLCTSIIASGLDIPNVNTIIIDQAQTFGLSDLYQIRGRVGRSYRQANAYLVIP 816

Query: 598 PP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           P   LS+++  R+  ++       GF IA  DL+ R  GE+LG++QSG+ +
Sbjct: 817 PEEILSEDAKKRIKAIQEMSYLGAGFHIALRDLEIRGAGELLGVEQSGVNR 867


>gi|282866318|ref|ZP_06275364.1| transcription-repair coupling factor [Streptomyces sp. ACTE]
 gi|282558904|gb|EFB64460.1| transcription-repair coupling factor [Streptomyces sp. ACTE]
          Length = 1176

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 135/381 (35%), Positives = 214/381 (56%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 624 PYAETPDQLSTIAEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 683

Query: 330 IGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             +L QQHY  F ++Y Q   + V  ++        +  LE +  G   ++IGTH LF  
Sbjct: 684 TTLLVQQHYGTFTERYAQ-FPVNVRALSRFQSDTESKATLEGLRDGSVDLVIGTHRLFSS 742

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             ++  L LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S I
Sbjct: 743 ETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTI 802

Query: 449 TEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
           T  P  R P+ T + P    +I   + R   +L EG + ++I  ++E  ++  +  R +V
Sbjct: 803 TTPPEERHPVLTFVGPYEEKQIGAAVRR--ELLREG-QVFYIHNRVESIDRAAARLREIV 859

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + IA  HG+M +   E V+  F      +L++TT++E GID+ +A+ +I
Sbjct: 860 PE---------ARIATAHGQMGEGALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLI 910

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFL 619
           +E  ++FGL+QLHQLRGRVGRG +      LY P  PL++ ++ RL+ + ++TE   G  
Sbjct: 911 VERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMY 970

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A +DL+ R  G +LG +QSG
Sbjct: 971 VAMKDLEIRGAGNLLGGEQSG 991


>gi|91200730|emb|CAJ73782.1| similar to transcription-repair coupling factor [Candidatus
           Kuenenia stuttgartiensis]
          Length = 1092

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 133/414 (32%), Positives = 219/414 (52%), Gaps = 23/414 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q   ++ I  DM  K  M R++ GDVG GKT +A+ A   A   G QA ++ P 
Sbjct: 550 YEETPDQLQVLETIKSDMQSKRPMDRLICGDVGYGKTELAIRAAFKAAMYGKQAAVLVPT 609

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILAQQHY    +   +  + +E+++       ++  LE+   G+  I+IGTH L Q  +
Sbjct: 610 TILAQQHYTTFSERMADYPVEIEVLSRLKSHKEQKDILEKTLAGKIDILIGTHRLLQKDV 669

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L LVI+DE+ RFGV  + +  +      +L +TATPIPRTL ++ +G  DIS +  
Sbjct: 670 VFKDLGLVIIDEEQRFGVAHKERFKKMRQVVDMLTLTATPIPRTLHMSLMGIKDISSLNT 729

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFN 508
            P GR+ I+T I+   R D    R  ++L   +  + Y++  ++      N   +    +
Sbjct: 730 PPLGRQSIRTQIM---RFDPQRIRQAILLEMNRNGQVYFVHNRV-----YNIERIAHTLS 781

Query: 509 SLHEHFTSSIAIIHGRMSDIDK--ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           ++     + I ++HG+M D +K     M  F +    +L++TT+IE G+D+ + + I I 
Sbjct: 782 TIVPE--ARILVVHGQMMD-EKLLAQRMKDFVDHKADILVSTTIIESGLDIPNVNTIFIN 838

Query: 567 NAEHFGLAQLHQLRGRVGRGEE--ISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIA 621
            A+ FGLA LHQLRGRVGR +    +  +L    P++  +  R+  ++   +   GF IA
Sbjct: 839 CADSFGLADLHQLRGRVGRYKHHAYAYIVLPIDRPVTPEAEKRVKAIEEFAELGAGFKIA 898

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH-ILTQDPDLT 674
             DL+ R  G ILG++Q G         E++  LLEIA   A++  +++ PD++
Sbjct: 899 MRDLEIRGAGNILGVEQHG--HIAAVGYEMYCRLLEIAVCKARNEPVSEPPDVS 950


>gi|226320379|ref|ZP_03795948.1| transcription-repair coupling factor [Borrelia burgdorferi 29805]
 gi|226234242|gb|EEH32954.1| transcription-repair coupling factor [Borrelia burgdorferi 29805]
          Length = 1125

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 208/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P
Sbjct: 580 PYDETPDQIRAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSP 639

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QH+   KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +    
Sbjct: 640 TTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNAETRILKELKIGKIDIIIGTHKILSKK 699

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS + 
Sbjct: 700 FTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLK 759

Query: 450 EKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R  I+  +   +   I   IE     LS   + + +   IEE      + ++E+ 
Sbjct: 760 IPPQNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKGLIEKL 814

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III N
Sbjct: 815 TPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINN 869

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA 
Sbjct: 870 ANKFGLAQLYQLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAM 929

Query: 623 EDLKQRKEGEILGIKQSG 640
           +D++ R  G +LG +Q G
Sbjct: 930 KDMEIRGVGNLLGREQHG 947


>gi|312131279|ref|YP_003998619.1| transcriptioN-repair coupling factor [Leadbetterella byssophila DSM
           17132]
 gi|311907825|gb|ADQ18266.1| transcription-repair coupling factor [Leadbetterella byssophila DSM
           17132]
          Length = 1113

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 125/381 (32%), Positives = 200/381 (52%), Gaps = 23/381 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q +A   +  DM +   M R++ GDVG GKT VA+ A   A   G Q  ++ P 
Sbjct: 553 YEDTPDQAAATAKVKADMEKPYPMDRLVCGDVGFGKTEVAIRAAFKAAVDGKQVAVLVPT 612

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH+    +   N  + V+ +          K L+ +  G+  I+IGT  L   S+
Sbjct: 613 TILALQHFRTFSERLSNMPVTVDYLNRFKTTKDTNKTLKDVKEGKVDILIGTQKLLSKSL 672

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           Q+  L L+I+DE+ +FGV+ + ++ +      VL +TATPIPRTL  + +G  D+S I  
Sbjct: 673 QFKDLGLLIIDEEQKFGVKAKDRIKELKLNVDVLTLTATPIPRTLHFSLMGARDLSVIAT 732

Query: 451 KPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEE-KKESN--FRSVVER 506
            P  R+ ++T +      +E+I + +   L+ G + +++  ++ +  + +N  +R V E 
Sbjct: 733 PPPTRQTVETRVETFK--EEIIRDAITYELNRGGQVFFVHNRVGDIDRIANIIYRLVPE- 789

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                    + I + HG+M     E VM  F      +LI+T +IE G+D+ +A+ III 
Sbjct: 790 ---------AKIGVAHGQMEGEKLEKVMIRFIENETNILISTNIIESGLDIPNANTIIIN 840

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVLK---NTEDGFLI 620
            A  FGL+ LHQ+RGRVGR  + + C LL  PPLS    ++  R+  ++   +  DGF +
Sbjct: 841 QAHMFGLSDLHQMRGRVGRSNKKAFCYLL-TPPLSSLTTDARKRMQTIEQFSDLGDGFKV 899

Query: 621 AEEDLKQRKEGEILGIKQSGM 641
           A  DL  R  G +LG +QSG 
Sbjct: 900 AMRDLDIRGAGNLLGAEQSGF 920


>gi|256787262|ref|ZP_05525693.1| transcriptional-repair coupling factor [Streptomyces lividans TK24]
 gi|289771157|ref|ZP_06530535.1| transcription-repair coupling factor [Streptomyces lividans TK24]
 gi|289701356|gb|EFD68785.1| transcription-repair coupling factor [Streptomyces lividans TK24]
          Length = 1184

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 148/433 (34%), Positives = 233/433 (53%), Gaps = 27/433 (6%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +WT + AR + A  E+ A  I L   R       G     +    +++    P+  T  Q
Sbjct: 583 DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGSDTPWQRELEDAFPYVETPDQ 639

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 640 LTTIAEVKDDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 699

Query: 338 Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           +  F ++Y Q   + V+ ++        +  LE +  G   I+IGTH LF    ++  L 
Sbjct: 700 FGTFSERYAQ-FPVSVKALSRFQSDTESKATLEGLREGSVDIVIGTHRLFSSETKFKDLG 758

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 759 LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 818

Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
           P+ T + P    +I   I R   +L EG + ++I  ++E  ++  +  R +V        
Sbjct: 819 PVLTFVGPYEHRQIGAAIRR--ELLREG-QVFYIHNRVESIDRAAAKLREIVPE------ 869

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 870 ---ARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFG 926

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
           L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 927 LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 986

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +QSG
Sbjct: 987 RGAGNLLGGEQSG 999


>gi|21221548|ref|NP_627327.1| transcriptional-repair coupling factor [Streptomyces coelicolor
           A3(2)]
 gi|10241792|emb|CAC09550.1| putative transcriptional-repair coupling factor [Streptomyces
           coelicolor A3(2)]
          Length = 1184

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 148/433 (34%), Positives = 233/433 (53%), Gaps = 27/433 (6%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +WT + AR + A  E+ A  I L   R       G     +    +++    P+  T  Q
Sbjct: 583 DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGSDTPWQRELEDAFPYVETPDQ 639

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 640 LTTIAEVKDDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 699

Query: 338 Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           +  F ++Y Q   + V+ ++        +  LE +  G   I+IGTH LF    ++  L 
Sbjct: 700 FGTFSERYAQ-FPVSVKALSRFQSDTESKATLEGLREGSVDIVIGTHRLFSSETKFKDLG 758

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 759 LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 818

Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
           P+ T + P    +I   I R   +L EG + ++I  ++E  ++  +  R +V        
Sbjct: 819 PVLTFVGPYEHRQIGAAIRR--ELLREG-QVFYIHNRVESIDRAAAKLREIVPE------ 869

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 870 ---ARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFG 926

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
           L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 927 LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 986

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +QSG
Sbjct: 987 RGAGNLLGGEQSG 999


>gi|145593442|ref|YP_001157739.1| transcription-repair coupling factor [Salinispora tropica CNB-440]
 gi|145302779|gb|ABP53361.1| transcription-repair coupling factor [Salinispora tropica CNB-440]
          Length = 1216

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 232/431 (53%), Gaps = 23/431 (5%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W  S AR R A  E+ A  I L   RK  K   G     +    +++    P+  T  Q
Sbjct: 604  DWQKSKARARKAVREIAAQLIQLYAARKASK---GHSFGPDTPWQRELEDAFPWQETPDQ 660

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +AI+++ +DM Q   M R++ GDVG GKT +A+ A   A++ G Q  ++ P  +L QQH
Sbjct: 661  LAAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAIQDGRQVAVLVPTTLLVQQH 720

Query: 338  YE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            Y  F ++ +Q    I ++     P+    + LE  A G A I+IGTH L Q S ++  L 
Sbjct: 721  YNTFAERMSQFPATIRQLSRFQTPK-EAEQTLEMAAAGTADIVIGTHRLLQASARFRSLG 779

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            LVIVDE+ RFGV+ +  L     +  VL M+ATPIPRTL +   G  ++S I   P  R 
Sbjct: 780  LVIVDEEQRFGVEHKEHLKSVRASVDVLSMSATPIPRTLEMAITGIREMSTIATPPEERH 839

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHF 514
            P+ T +   +         + +L +G + +++  ++E  E+     R +V          
Sbjct: 840  PVLTAVGAYDERQVAAAIHRELLRDG-QVFYLHNRVESIERAARRLRELVPE-------- 890

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + +A+ HG++ +   E VM  F      +LI TT++E GID+ +A+ +I+E A+  GLA
Sbjct: 891  -ARVAVAHGQLGEEALERVMVGFWEKEFDVLICTTIVESGIDIPNANTLIVERADLLGLA 949

Query: 575  QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRK 629
            QLHQ+RGRVGRG E +    LY    PL+++++ RL+ + ++TE   G  +A +DL+ R 
Sbjct: 950  QLHQIRGRVGRGRERAYAYFLYPSDKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRG 1009

Query: 630  EGEILGIKQSG 640
             G +LG +QSG
Sbjct: 1010 AGNLLGGEQSG 1020


>gi|226327606|ref|ZP_03803124.1| hypothetical protein PROPEN_01477 [Proteus penneri ATCC 35198]
 gi|225204132|gb|EEG86486.1| hypothetical protein PROPEN_01477 [Proteus penneri ATCC 35198]
          Length = 443

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 132/417 (31%), Positives = 214/417 (51%), Gaps = 20/417 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   +  L+KI            DLL + P  + D+ +   IS++      T
Sbjct: 10  PLTTLHGVGASQADKLAKI------GLVTIEDLLLHLPLRYEDQTHLYAISDLLPGIPAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           ++G + + +     +R+     ++DG+G +TL FF     M KN   +G+++   G++K+
Sbjct: 64  VSGEVLR-TEVSFGRRKMMTCQISDGSGILTLRFFNFTVAM-KNNLAQGKQVIAYGEVKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
                 ++HP Y I     +V     +  +YS   GL     +K+I +AL  L    + E
Sbjct: 122 GSRGPEIIHPEYKIKVAGAEVKLQETLTPIYSTTEGLRQTSLRKLIEQALELLDTCAINE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +    +     P +A A   +HNP     F    +   PA++RL  +ELLA  + +L  
Sbjct: 182 LLPDQFIH--GLPPLATALRTLHNPPPDIAFAQLEKGQHPAQKRLIIEELLAHNLGMLNA 239

Query: 244 RKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           R   +     P+ +     + Q+ L  +PF+PT +Q+  + +I  D+ +   M+R++QGD
Sbjct: 240 RAGAQSYRAEPLFMPSTSTLRQQFLAMLPFTPTNAQQRVVNEIETDLEKNYPMMRLIQGD 299

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA ++   A+  G Q  +MAP  +LA+QH    +K+ +   I V  + G    
Sbjct: 300 VGSGKTLVAALSALRAIANGKQVALMAPTELLAEQHALTFRKWFEPFGIQVGWLAGKQKG 359

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
             R      IA+G+  IIIGTHA+FQ+ ++++ L LVI+DEQHRFGV QRL L +K 
Sbjct: 360 KAREAQQNAIANGEVSIIIGTHAIFQEQVKFHSLALVIIDEQHRFGVHQRLALWKKG 416


>gi|303231983|ref|ZP_07318691.1| transcription-repair coupling factor [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513412|gb|EFL55446.1| transcription-repair coupling factor [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 1096

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 121/378 (32%), Positives = 211/378 (55%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  A ++I + M +   M R+L GDVG GKT VA+ A+  AV +G Q  ++ P
Sbjct: 546 PYEETEDQLQATREIKESMERPTPMDRLLAGDVGFGKTEVAMRAIFKAVVSGKQVAVLVP 605

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHY+          + V+++      A +++ L+ I +G   I+IGTH+L    
Sbjct: 606 TTVLAQQHYQTFLNRFNPFGVKVDVLNRFRSTAEKKEVLKGIENGSIDILIGTHSLLNKK 665

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L  ++VDE+ RFGV Q+ K  + A    VL ++ATPIPRTL ++ +G  ++S I+
Sbjct: 666 VKFKDLGFLVVDEEQRFGVAQKEKWKEWANNIDVLTLSATPIPRTLHMSLVGVREMSVIS 725

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R P++T ++  + ++ + + +K  ++ G + Y++  ++         + +     
Sbjct: 726 TPPEDRLPVQTYVVEYD-MNLIADAIKREIARGGQVYFVYNRV---------ASINHMGE 775

Query: 510 LHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           L E     +  A+ HG+M+    E +M  F  G   +L++T++IE G+D+ +A+ III +
Sbjct: 776 LLEQALPDLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYD 835

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A+  GL+QL+Q+RGRVGR    +    +Y P   LS+ +  RL  ++   +   GF +A 
Sbjct: 836 ADRLGLSQLYQMRGRVGRSRRRAYAYFMYRPDKMLSEAAEKRLKAIEEFTELGAGFKLAM 895

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +Q G
Sbjct: 896 RDLEIRGAGNLLGSQQHG 913


>gi|300743898|ref|ZP_07072918.1| transcription-repair coupling factor [Rothia dentocariosa M567]
 gi|300380259|gb|EFJ76822.1| transcription-repair coupling factor [Rothia dentocariosa M567]
          Length = 1229

 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 135/422 (31%), Positives = 229/422 (54%), Gaps = 18/422 (4%)

Query: 225  RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
            R R A  E+ A  + L   R+  +   G   + +    +++  + P++ T  Q +AI ++
Sbjct: 627  RARKAVKEIAADLVKLYSARQASR---GHAFSEDTPWQRELEESFPYNETPDQLTAIHEV 683

Query: 285  LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
              DM ++  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH+E   + 
Sbjct: 684  KADMEKEIPMDRLISGDVGFGKTEVAIRAAFKAVQDGKQVAVLVPTTLLAQQHFETFTER 743

Query: 345  TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                 I +++++        R  +E IA G   ++IGTH +  +++++  L LV++DE+ 
Sbjct: 744  FSGFPIKIKVLSRFQKAKETRTIVEDIASGSIDVVIGTHRILSENVKFKDLGLVVIDEEQ 803

Query: 405  RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            RFGV+ + KL Q  T   VL M+ATPIPRTL ++  G  + S +   P  R P+ T + P
Sbjct: 804  RFGVEHKEKLKQMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATAPEERHPVLTFVGP 863

Query: 465  INRID-EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
              R D ++   ++  L    + +++  ++     +N  +V      L     + IA  HG
Sbjct: 864  --RTDAQITAAIRRELMREGQVFFVHNRV-----ANIDTVAAEIGKLVPE--ARIATAHG 914

Query: 524  RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            RMS+   E ++  F      +L+ TT++E G+D+ +A+ +I++NA+++GL+QLHQLRGRV
Sbjct: 915  RMSESRLEQIIVDFWERRFDVLVCTTIVETGLDISNANTLIVDNAQNYGLSQLHQLRGRV 974

Query: 584  GRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQ 638
            GRG E +    LY     L + ++ RL  +    +   G  +A +DL+ R  G +LG +Q
Sbjct: 975  GRGRERAYAYFLYPTDKSLGEVAHERLKAVATHNELGAGLQLAMKDLEIRGAGNLLGGEQ 1034

Query: 639  SG 640
            SG
Sbjct: 1035 SG 1036


>gi|213580805|ref|ZP_03362631.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 412

 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 136/413 (32%), Positives = 211/413 (51%), Gaps = 22/413 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L    +
Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L
Sbjct: 180 AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 237

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 238 ALRAGAQRYHTQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G    
Sbjct: 298 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L
Sbjct: 358 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLAL 410


>gi|310657789|ref|YP_003935510.1| transcription-repair coupling factor [Clostridium sticklandii DSM
           519]
 gi|308824567|emb|CBH20605.1| transcription-repair coupling factor [Clostridium sticklandii]
          Length = 1130

 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 205/378 (54%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AI+D+ +DM     M R++ GDVG GKT VA+ A+  +     Q   + P
Sbjct: 613 PYEETVDQINAIEDVKKDMQNIKPMDRLICGDVGYGKTEVAIRAIFKSCMDSKQVAFLVP 672

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILAQQHY  +K+      I VE+++    +  + + ++    G   ++IGTH +  + 
Sbjct: 673 TTILAQQHYNNLKERFAGYPIRVEVVSRFKTKKAQEQIIDDARRGLVDVLIGTHRILSND 732

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L++VDE+ RFGV+ +  L +      VL ++ATPIPRTL  +  G  D+S + 
Sbjct: 733 VSFKDLGLLVVDEEQRFGVKHKELLKKLKKDVDVLTLSATPIPRTLHFSLSGIRDMSLLE 792

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
           E P  R PI T +    R   +++ L+  L+ G + +++  +++  +K     R +V   
Sbjct: 793 EPPEDRHPIMTYVTEA-REGIILDALERELARGGQVFFVYNRVQTIDKMADIIRRLVPDA 851

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           N         +A+ HG+MS    E++M  F      +L++TT+IE G+D+ +A+ +I+ +
Sbjct: 852 N---------LAVAHGQMSPRQLENIMVDFLEKEYDILLSTTIIETGMDISNANTMIVYD 902

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+  GL+QL+QLRGRVGR    +    +Y     L++ S  RL  +K  TE   GF IA 
Sbjct: 903 ADKMGLSQLYQLRGRVGRSSRQAYAYFMYQKDKVLTEVSEKRLKAIKEFTEFGSGFKIAM 962

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  G ILG +Q G
Sbjct: 963 RDLEIRGAGNILGERQHG 980


>gi|284033574|ref|YP_003383505.1| transcription-repair coupling factor [Kribbella flavida DSM 17836]
 gi|283812867|gb|ADB34706.1| transcription-repair coupling factor [Kribbella flavida DSM 17836]
          Length = 1212

 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 205/378 (54%), Gaps = 17/378 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF  T  Q + I D+ +DM +   M RI+ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 659  PFVETPDQLATIDDVKRDMERVTPMDRIVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 718

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L QQHY    +      + V  ++        +  ++ +A G   ++IGTH LF   
Sbjct: 719  TTLLVQQHYATFAERYAAFPVNVAALSRFQTDKEAKATMDGLADGSVDVVIGTHRLFSGE 778

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +Q+  L LV+VDE+ RFGV+ + +L +  TA  VL M+ATPIPRTL ++  G  ++S I 
Sbjct: 779  VQFKDLGLVVVDEEQRFGVEHKEQLKRLRTAVDVLTMSATPIPRTLEMSITGIREMSTIA 838

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
              P  R P+ T + P +         + +L EG + + +  ++   EK  +  R +V   
Sbjct: 839  TPPEERHPVLTFVGPYDEGQVTAAIRRELLREG-QVFVVHNRVNTIEKAAARIRQLVPE- 896

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                    + +++ HG+M +   E V+  F      +++ TT++E GID+ +A+ +I+E 
Sbjct: 897  --------ARVSVAHGQMPEHHLEQVIQEFWEKQADVIVCTTIVESGIDISNANTMIVER 948

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622
            A+  GL+QLHQLRGRVGRG E +     + P  PL++ ++ RL+ +    D   G  +A 
Sbjct: 949  ADLLGLSQLHQLRGRVGRGRERAYAYFFFPPEKPLTETAHDRLATIAQHADLGAGMQVAM 1008

Query: 623  EDLKQRKEGEILGIKQSG 640
            +DL+ R  G +LG +QSG
Sbjct: 1009 KDLEIRGAGNLLGGEQSG 1026


>gi|320010356|gb|ADW05206.1| transcription-repair coupling factor [Streptomyces flavogriseus
           ATCC 33331]
          Length = 1176

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 214/381 (56%), Gaps = 23/381 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 624 PYAETPDQLSTIAEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 683

Query: 330 IGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             +L QQH+  F ++Y Q   + V  ++        +  LE +  G   ++IGTH LF  
Sbjct: 684 TTLLVQQHFGTFTERYAQFP-VNVRALSRFQSDTESKATLEGLKDGSVDLVIGTHRLFSS 742

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             ++  L LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S I
Sbjct: 743 ETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTI 802

Query: 449 TEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVV 504
           T  P  R P+ T + P    +I   + R   +L EG + ++I  ++E  ++  +  R +V
Sbjct: 803 TTPPEERHPVLTFVGPYEEKQIGAAVRR--ELLREG-QVFYIHNRVESIDRAAARLREIV 859

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                      + IA  HG+M +   E V+  F      +L++TT++E GID+ +A+ +I
Sbjct: 860 PE---------ARIATAHGQMGESQLEQVVVDFWEKRFDVLVSTTIVESGIDISNANTLI 910

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFL 619
           +E  ++FGL+QLHQLRGRVGRG +      LY P  PL++ ++ RL+ + ++TE   G  
Sbjct: 911 VERGDNFGLSQLHQLRGRVGRGRDRGYSYFLYPPEKPLTETAHERLATIAQHTEMGAGMY 970

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A +DL+ R  G +LG +QSG
Sbjct: 971 VAMKDLEIRGAGNLLGGEQSG 991


>gi|57506018|ref|ZP_00371941.1| ATP-dependent DNA helicase RecG [Campylobacter upsaliensis RM3195]
 gi|57015626|gb|EAL52417.1| ATP-dependent DNA helicase RecG [Campylobacter upsaliensis RM3195]
          Length = 603

 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 141/383 (36%), Positives = 214/383 (55%), Gaps = 23/383 (6%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +K L+ +PFSPTK Q  AI DI +D+S++    R++ GDVG GKTLV L+A A +V    
Sbjct: 216 EKWLKTLPFSPTKDQIQAICDIREDLSKEVAKRRVIMGDVGCGKTLV-LLAAALSVYP-K 273

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA++MAP  ILA+Q +E  +K   +   I+ I      +  +++   +     AH+IIGT
Sbjct: 274 QALLMAPTSILAEQLFEEAQKLLPDFLQILFI------KGGKKEKKIKEQIQNAHLIIGT 327

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLT 438
           HAL  +  + +K +LV++DEQHRFG  QR K++  A+     PH +  +ATPIPRTL + 
Sbjct: 328 HALIYE--ESFKAVLVMIDEQHRFGSNQRQKISTLASKEGLNPHFIQFSATPIPRTLSMI 385

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               ++ S I + P  +K I T  +      ++  ++   +++  +   I P + E ++ 
Sbjct: 386 QSELLNFSFIKQMPF-KKEISTYCVQNEDFAKIKAKIDEEIAQNHQIIIIYPLVSESEKI 444

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            + S+ E      +H+  ++ + HG+  D +K+ ++  FK     +L++TTV+EVGI + 
Sbjct: 445 PYLSLDEAKFYWQKHY-KNVFVTHGK--DKEKDKILQEFKEKG-DILLSTTVVEVGISLP 500

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             S I+I  AE  GLA LHQLRGRVGR    S C L  +  L K    RL       DGF
Sbjct: 501 RLSTIVIVGAERLGLATLHQLRGRVGRVGLKSYCYL--YTKL-KEIPQRLIEFSKILDGF 557

Query: 619 LIAEEDLKQRKEGEIL-GIKQSG 640
            IAE DLK R  G++L G  Q G
Sbjct: 558 KIAELDLKNRLSGDLLDGYIQHG 580


>gi|311898036|dbj|BAJ30444.1| putative transcription-repair-coupling factor [Kitasatospora setae
            KM-6054]
          Length = 1202

 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 132/380 (34%), Positives = 211/380 (55%), Gaps = 21/380 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P++ T  Q + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 644  PYAETPDQLTTIGEVKADMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 703

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L QQH+    +   N  + V  ++        +  LE +  G   ++IGTH LF   
Sbjct: 704  TTLLVQQHFSTFAERYANFPVNVRALSRFQTDTEAKAVLEGLFDGSVDVVIGTHRLFSSE 763

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
             ++  L LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT
Sbjct: 764  TRFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTIT 823

Query: 450  EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
              P  R P+ T + P +  +I   I R   +L EG + ++I  ++E  +K  +  + +V 
Sbjct: 824  TPPEERHPVLTFVGPYDEKQISAAIRR--ELLREG-QVFYIHNRVESIDKAAARLKELVP 880

Query: 506  RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                      + +A  HG+M +   E V+  F      +L++TT++E GID+ +A+ +I+
Sbjct: 881  E---------ARVATAHGQMGETQLEKVVVDFWEKEFDVLVSTTIVESGIDISNANTLIV 931

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLI 620
            E  + FGL+QLHQLRGRVGRG E     +LY P  PL++ ++ RL+ + ++TE   G  +
Sbjct: 932  ERGDTFGLSQLHQLRGRVGRGRERGYAYMLYPPEKPLTETAHERLATIAQHTEMGAGMYV 991

Query: 621  AEEDLKQRKEGEILGIKQSG 640
            A +DL+ R  G +LG +QSG
Sbjct: 992  AMKDLEIRGAGNLLGGEQSG 1011


>gi|295838353|ref|ZP_06825286.1| transcription-repair coupling factor [Streptomyces sp. SPB74]
 gi|295826975|gb|EDY42784.2| transcription-repair coupling factor [Streptomyces sp. SPB74]
          Length = 1108

 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 146/433 (33%), Positives = 234/433 (54%), Gaps = 27/433 (6%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 579 DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGPDTPWQRELEDAFPYAETPDQ 635

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 636 LTTISEVKSDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQEGKQVAVLVPTTLLVQQH 695

Query: 338 YE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
              F ++Y Q   + +  ++        +  LE +  G   ++IGTH LF    ++  L 
Sbjct: 696 LSTFSERYAQFP-VTIRALSRFQTDTEAKATLEGLRDGSVDLVIGTHRLFSSETKFKDLG 754

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 755 LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 814

Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
           P+ T + P +  +I   I R   +L EG + ++I  +++  ++  +  R+VV        
Sbjct: 815 PVLTFVGPYDEKQIGAAIRR--ELLREG-QVFYIHNRVDSIDRAAARLRAVVPE------ 865

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 866 ---ARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFG 922

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
           L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 923 LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 982

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +QSG
Sbjct: 983 RGAGNLLGGEQSG 995


>gi|315638290|ref|ZP_07893471.1| transcription-repair coupling factor [Campylobacter upsaliensis
           JV21]
 gi|315481637|gb|EFU72260.1| transcription-repair coupling factor [Campylobacter upsaliensis
           JV21]
          Length = 974

 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 138/426 (32%), Positives = 219/426 (51%), Gaps = 26/426 (6%)

Query: 225 RERLAYDEL-LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           +ERL    L LA QI  +  ++   K   + I+ E +     ++   FS T+ Q  A +D
Sbjct: 418 KERLKTKLLALASQIIAMAAKRALIKPKELKIDFEAQ--ADFVQRAGFSYTEDQVKACED 475

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           IL+D      M R+L GDVG GKT VA+ A+   +++G       P  +L+ QHY+ +KK
Sbjct: 476 ILEDFKSSRVMDRLLSGDVGFGKTEVAMNAIFPVLKSGFSVFFFVPTTLLSHQHYQSLKK 535

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
             +   + V  +        ++  LE + +    +++GTHAL   S++   + LVI+DE+
Sbjct: 536 RFEEFDLKVFKLDRFTSAKEKKYLLEELKNNTPCVVVGTHALL--SVECENVALVIIDEE 593

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKITEKPAGRKPIKTV 461
           H+FGV+Q+ KL + +   H+L M+ATPIPR+L   L+S+    I  +   P  R  +++ 
Sbjct: 594 HKFGVKQKEKLKEFSQNSHLLSMSATPIPRSLNQALSSIKSYSI--LQTPPEDRLDVRSF 651

Query: 462 IIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           +       + E I R    L  G + ++I   I   K+   + +   F  L       I 
Sbjct: 652 VRESEDALLKEAILR---ELRRGGQIFYIHNHIASIKQCE-KHLKSLFKDLR------IL 701

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I+H ++     E  M  F+N    LL+ T+++E GID+ + + IIIE +E FG+A LHQL
Sbjct: 702 ILHSKIDAKTTEEEMLKFENKAYDLLLCTSIVESGIDLPNVNTIIIEKSERFGMADLHQL 761

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR  +   C  L      LS+ +  RL  L++      G L+A  DL+ R  G +L
Sbjct: 762 RGRVGRSNKQGYCYFLVEDKANLSEAALKRLVSLESNSFLGAGSLLAYHDLEIRGGGNLL 821

Query: 635 GIKQSG 640
           G+ QSG
Sbjct: 822 GLDQSG 827


>gi|57167968|ref|ZP_00367107.1| transcription-repair coupling factor [Campylobacter coli RM2228]
 gi|57020342|gb|EAL57011.1| transcription-repair coupling factor [Campylobacter coli RM2228]
          Length = 978

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 207/379 (54%), Gaps = 23/379 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           FS T+ Q  A ++IL D      M R+L GDVG GKT VA+ A+   V++G  A   AP 
Sbjct: 466 FSYTQDQNKACEEILNDFENGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFFFAPT 525

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L+ QHY+ +KK  +   I V  +        ++  +  +   +A ++IGTHAL   ++
Sbjct: 526 TLLSHQHYKSLKKRFEPFGIEVFKLDRFTSTKEKKTLMLNLEQNKACVVIGTHALL--NV 583

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKI 448
           +   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR+L   L+S+    +  +
Sbjct: 584 ECENLALVIIDEEHKFGVKQKEKLKELTQNSHLLSMSATPIPRSLNQALSSIKSYSV--L 641

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
              P  R  ++T +   +   + E I R    L  G + ++I   I   ++   + +++ 
Sbjct: 642 QTPPEDRLDVRTFVKENDDALLKEAITR---ELRRGGQIFYIHNHIASIEQCK-KHLLDL 697

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F +L       I I+H ++    +E  M  F+N    LL++T+++E GID+ +A+ +I+E
Sbjct: 698 FKNLR------ILILHSKIDAKIQEEEMLKFENKEYDLLLSTSIVESGIDLRNANTMIVE 751

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIA 621
            ++ FG+A LHQLRGRVGR +    C  L      L++++  RL  L++      G ++A
Sbjct: 752 RSDRFGMADLHQLRGRVGRSDRQGYCYFLVENKEELTQDALKRLVSLESNSYLGAGSVLA 811

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G +LGI QSG
Sbjct: 812 YHDLEIRGGGNLLGIDQSG 830


>gi|329941162|ref|ZP_08290441.1| transcriptional-repair coupling factor [Streptomyces
           griseoaurantiacus M045]
 gi|329299693|gb|EGG43592.1| transcriptional-repair coupling factor [Streptomyces
           griseoaurantiacus M045]
          Length = 1176

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 146/433 (33%), Positives = 233/433 (53%), Gaps = 27/433 (6%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +WT + AR + A  E+ A  I L   R       G     +    +++    P++ T  Q
Sbjct: 575 DWTKTKARAKKAVKEIAADLIKLYSARMAAP---GHAFGGDTPWQRELEDAFPYAETPDQ 631

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 632 LTTIAEVKDDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 691

Query: 338 Y-EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           +  F ++Y Q   + V  ++        +  LE +  G   ++IGTH LF    ++  L 
Sbjct: 692 FGTFSERYAQFP-VNVRALSRFQTDTEAKAVLEGLREGSVDVVIGTHRLFSSETKFKDLG 750

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R 
Sbjct: 751 LVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERH 810

Query: 457 PIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
           P+ T + P    +I   + R   +L EG + ++I  ++E  ++  +  R +V        
Sbjct: 811 PVLTFVGPYEEKQIGAAVRR--ELLREG-QVFYIHNRVESIDRAAARLREIVPE------ 861

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FG
Sbjct: 862 ---ARIATAHGQMSEQALEQVVVDFWEKRFDVLVSTTIVESGIDISNANTLIVERGDNFG 918

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQ 627
           L+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +DL+ 
Sbjct: 919 LSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEI 978

Query: 628 RKEGEILGIKQSG 640
           R  G +LG +QSG
Sbjct: 979 RGAGNLLGGEQSG 991


>gi|154175141|ref|YP_001408519.1| transcription-repair coupling factor [Campylobacter curvus 525.92]
 gi|112803058|gb|EAU00402.1| transcription-repair coupling factor [Campylobacter curvus 525.92]
          Length = 981

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 205/386 (53%), Gaps = 23/386 (5%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           K ++N  F  T  Q+ A+++I+ D+     M R+L GDVG GKT VA+ A+ A V++G  
Sbjct: 460 KFVQNAGFDYTTDQQKAVEEIMSDLKSTRVMDRLLSGDVGFGKTEVAMNAIFACVKSGFS 519

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+   P  +L+ QHY+ +K+   +  + +  +        +   L+ +   +  + +GTH
Sbjct: 520 ALFFVPTTLLSAQHYKSLKERFADFGVKIFRLDRFTSAKEKSAMLKVLKDNEPCVCVGTH 579

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
           AL    ++   + L+++DE+H+FGV+Q+ +L + +   H+L M+ATPIPR+L +      
Sbjct: 580 ALL--GVKANNVGLIVIDEEHKFGVKQKEQLKEVSANSHILSMSATPIPRSLNMALSKIK 637

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIE--EKKESN 499
             S +   P+ R  ++T    +   DE  V E L   +  G +A++I   I   E+   N
Sbjct: 638 SYSVLATAPSSRLDVRT---SVREWDEKVVKEALMREMRRGGQAFYIHNHIADIEQTAQN 694

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R ++ +           I ++H +++    E  M  F+ G   +L+ T+++E GI + +
Sbjct: 695 LRKILPKIR---------ILVLHSKINAKTTEDEMMKFERGEYDVLLCTSIVESGIHLPN 745

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE-- 615
           A+ IIIENA  FG+A LHQLRGRVGR ++ + C  L      L  ++  RL  L++    
Sbjct: 746 ANTIIIENANKFGMADLHQLRGRVGRSDKQAYCYFLVEDKDALGGDALKRLLALESNSFL 805

Query: 616 -DGFLIAEEDLKQRKEGEILGIKQSG 640
             G L+A  DL+ R  G I+G  QSG
Sbjct: 806 GSGSLLAYHDLEIRGGGNIVGEAQSG 831


>gi|305431881|ref|ZP_07401048.1| transcription-repair coupling factor [Campylobacter coli JV20]
 gi|304444965|gb|EFM37611.1| transcription-repair coupling factor [Campylobacter coli JV20]
          Length = 978

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 207/379 (54%), Gaps = 23/379 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           FS T+ Q  A ++IL D      M R+L GDVG GKT VA+ A+   V++G  A   AP 
Sbjct: 466 FSYTQDQNKACEEILNDFENGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFFFAPT 525

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L+ QHY+ +KK  +   I V  +        ++  +  +   +A ++IGTHAL   ++
Sbjct: 526 TLLSHQHYKSLKKRFEPFGIEVFKLDRFTSTKEKKTLMLNLEQNKACVVIGTHALL--NV 583

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKI 448
           +   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR+L   L+S+    +  +
Sbjct: 584 ECENLALVIIDEEHKFGVKQKEKLKELTQNSHLLSMSATPIPRSLNQALSSIKSYSV--L 641

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
              P  R  ++T +   +   + E I R    L  G + ++I   I   ++   + +++ 
Sbjct: 642 QTPPEDRLDVRTFVKENDDALLKEAITR---ELRRGGQIFYIHNHIASIEQCK-KHLLDL 697

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F +L       I I+H ++    +E  M  F+N    LL++T+++E GID+ +A+ +I+E
Sbjct: 698 FKNLR------ILILHSKIDAKIQEEEMLKFENKEYDLLLSTSIVESGIDLPNANTMIVE 751

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIA 621
            ++ FG+A LHQLRGRVGR +    C  L      L++++  RL  L++      G ++A
Sbjct: 752 RSDRFGMADLHQLRGRVGRSDRQGYCYFLVENKEELTQDALKRLVSLESNSYLGAGSVLA 811

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G +LGI QSG
Sbjct: 812 YHDLEIRGGGNLLGIDQSG 830


>gi|258645650|ref|ZP_05733119.1| transcription-repair coupling factor [Dialister invisus DSM 15470]
 gi|260403014|gb|EEW96561.1| transcription-repair coupling factor [Dialister invisus DSM 15470]
          Length = 1135

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/383 (32%), Positives = 210/383 (54%), Gaps = 22/383 (5%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             PF  T  Q  AI+ + + M +   M  ++ GDVG GKT VA+ A+   V +G QA+++
Sbjct: 576 TFPFVETDDQLEAIQAVKRGMERPQPMDMLICGDVGFGKTEVAMRAVFKCVMSGFQAMVL 635

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +L+ QHY+  K    +  I + ++        +++ L ++A G+  ++IGTHA+  
Sbjct: 636 CPTTVLSSQHYKTFKGRMDSFGINIALLNRFTTMREKKEILSKLASGEMDVVIGTHAVLS 695

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I+   L L++VDE+ RFGV Q+ K    +    +L ++ATPIPRTL ++  G  D+  
Sbjct: 696 KKIECRHLGLLVVDEEQRFGVMQKEKWKSWSKKLDILTLSATPIPRTLHMSLTGVRDMVA 755

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKK--ESNFRS 502
           +T+ PA R  I+T +   +  D +++    +L E   G + Y+I  +IE  +  E++ R 
Sbjct: 756 MTQPPANRHAIQTYVTEYD--DTIVK--DAILHEKARGGQTYFIYNRIESIRAMEAHLRD 811

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           ++            +IA+ +G+M     E +M  F      +L+ TT+IE G+D  +A+ 
Sbjct: 812 ILPS--------DVTIAVAYGQMDGRTLEKIMVDFFEKKYDVLLCTTIIENGVDQPNANT 863

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DG 617
           +++ +A+  GL+Q++Q+RGRVGR E+I+     Y     LS+ +  RL+ ++  TE   G
Sbjct: 864 MLVYDADKLGLSQIYQMRGRVGRSEKIARAWFFYRQGKVLSEAAEKRLNTIREFTELGSG 923

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
           F IA  DL+ R  G +LG +Q G
Sbjct: 924 FKIAMRDLEIRGAGNLLGAEQHG 946


>gi|322379145|ref|ZP_08053542.1| transcription-repair coupling factor [Helicobacter suis HS1]
 gi|322380425|ref|ZP_08054627.1| transcription-repair coupling factor [Helicobacter suis HS5]
 gi|321147136|gb|EFX41834.1| transcription-repair coupling factor [Helicobacter suis HS5]
 gi|321148441|gb|EFX42944.1| transcription-repair coupling factor [Helicobacter suis HS1]
          Length = 986

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/396 (33%), Positives = 207/396 (52%), Gaps = 21/396 (5%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G  IN +    +   +   F+ T  QES+I  IL+D++Q   M R+L GDVG GKT VA+
Sbjct: 459 GEKINADSAKLKAFKQACGFTLTPDQESSITAILEDLAQGRVMDRLLNGDVGFGKTEVAM 518

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A+ A   +G Q+ +  P  +L  QH+  ++   +   + V  +  +     +++ LE I
Sbjct: 519 HAIYAIFLSGKQSAMFVPTTLLCAQHFNTLQARLEPFNLKVAKL--DRFSKDKKEVLEGI 576

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G+  +++GTHAL     ++  L LV+VDE+H+FGV+Q+  +   +   H L M+ATPI
Sbjct: 577 KEGRISVVVGTHALL--GAKFKDLGLVVVDEEHKFGVKQKEAIKILSHQVHSLSMSATPI 634

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489
           PRTL +       +S +T  PA RKP +T +       + E+I R    L    + ++I 
Sbjct: 635 PRTLSMALSKIKGVSTLTTPPANRKPSRTFVKEKTNPLLKEIILR---ELRRKGQVFYIH 691

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             IE   +   + ++E   +L       + I+H +    + E +M +F  G  ++L+ T+
Sbjct: 692 NHIESMPKVK-QKLLELLPNLR------VEILHSKTPAKEVEQIMVNFAQGHFEVLLCTS 744

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTR 607
           ++E GI + +A+ IIIE A+ FGLA LHQLRGRVGRG +   C  L      L + +  R
Sbjct: 745 IVESGIHLPNANTIIIEQADRFGLADLHQLRGRVGRGNKEGFCYYLVEDKNTLGEQASKR 804

Query: 608 LSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           L  L+       G  IA  DL+ R  G  LG  QSG
Sbjct: 805 LLALEKNSYLGSGASIAMHDLEIRGGGNFLGANQSG 840


>gi|57241985|ref|ZP_00369925.1| transcription-repair coupling factor [Campylobacter upsaliensis
           RM3195]
 gi|57017177|gb|EAL53958.1| transcription-repair coupling factor [Campylobacter upsaliensis
           RM3195]
          Length = 974

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/415 (32%), Positives = 214/415 (51%), Gaps = 25/415 (6%)

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A QI  +  ++   K   I I++E +     ++   FS T+ Q  A +DIL+D      M
Sbjct: 429 ASQIIAMAAKRALIKPKKIMIDLEAQ--ADFVQRAGFSYTEDQVKACEDILEDFKSSRVM 486

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+L GDVG GKT VA+ A+   +++G       P  +L+ QHY+ +KK  +   + V  
Sbjct: 487 DRLLSGDVGFGKTEVAMNAIFPVLKSGFSVFFFVPTTLLSHQHYQSLKKRFKEFDLKVFK 546

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +        ++  LE + +    +++GTHAL   S++   + LVI+DE+H+FGV+Q+ KL
Sbjct: 547 LDRFTSAKEKKYLLEELKNNTPCVVVGTHALL--SVECENVALVIIDEEHKFGVKQKEKL 604

Query: 415 TQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDE 470
            + +   H+L M+ATPIPR+L   L+S+    I  +   P  R  I++ +       + E
Sbjct: 605 KEFSQNSHLLSMSATPIPRSLNQALSSIKSYSI--LQTPPEDRLDIRSFVRESEDALLKE 662

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            I R    L  G + ++I   I   K+   + +   F  L       I I+H ++     
Sbjct: 663 AILR---ELRRGGQIFYIHNHIASIKQCE-KHLKSLFKDLR------ILILHSKIDAKTT 712

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E  M  F+N    LL+ T+++E GID+ + + IIIE +E FG+A LHQLRGRVGR  +  
Sbjct: 713 EEEMLKFENKAYDLLLCTSIVESGIDLPNVNTIIIEKSERFGMADLHQLRGRVGRSNKQG 772

Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
            C  L      LS+ +  RL  L++      G L+A  DL+ R  G +LG+ QSG
Sbjct: 773 YCYFLVEDKANLSEAALKRLVSLESNSFLGAGSLLAYHDLEIRGGGNLLGLDQSG 827


>gi|258654637|ref|YP_003203793.1| transcription-repair coupling factor [Nakamurella multipartita DSM
           44233]
 gi|258557862|gb|ACV80804.1| transcription-repair coupling factor [Nakamurella multipartita DSM
           44233]
          Length = 1192

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 205/379 (54%), Gaps = 19/379 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q VI+ P
Sbjct: 630 PYTETHDQLAAIDEVKADMERAVPMDRVISGDVGYGKTEIAVRAAFKAVQDGKQVVILVP 689

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQH     +      + V  ++         + ++ +A G   I+IGTH L Q S
Sbjct: 690 TTLLAQQHLSTFSERMSAFPVTVRGLSRFTSNEQAAQTVKGLADGSVDIVIGTHRLLQPS 749

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+Y  L LV+VDE+ RFGV+ +  +T       +L M+ATPIPRTL ++  G  ++S I 
Sbjct: 750 IRYKDLGLVVVDEEQRFGVEHKEHITALRAHVDMLTMSATPIPRTLEMSLAGIREMSTIA 809

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKV---VLSEGKKAYWICPQIEEKKESNFRSVVER 506
             P  R PI T    +   DE +    +   +L EG+  Y         + ++  SV  R
Sbjct: 810 TPPEERHPILTY---VGAYDEKLVAAAIRRELLREGQVFYV------HNRVADIESVARR 860

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                    + IA+ HG+M++   E ++D F      +L+ TT++E G+D+ +A+ +I++
Sbjct: 861 LREAVPE--ARIAVAHGQMNEDRLEKIIDGFWAREWDVLLCTTIVETGLDISNANTLIVD 918

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIA 621
           +AE  GL+Q+HQLRGRVGRG E      LY    PL++ ++ RL+ +    D   G  +A
Sbjct: 919 HAEVLGLSQMHQLRGRVGRGRERGYAYFLYPGEKPLTETAHDRLATIAQNSDLGAGMAVA 978

Query: 622 EEDLKQRKEGEILGIKQSG 640
            +DL+ R  G ILG +QSG
Sbjct: 979 MKDLEIRGAGSILGAEQSG 997


>gi|312133038|ref|YP_004000377.1| mfd [Bifidobacterium longum subsp. longum BBMN68]
 gi|311774027|gb|ADQ03515.1| Mfd [Bifidobacterium longum subsp. longum BBMN68]
          Length = 1194

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/428 (31%), Positives = 230/428 (53%), Gaps = 17/428 (3%)

Query: 219  EWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W +  A+ R    E+    I L   R++ K   G   + +    +++    P+  T  Q
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRAK---GFAFSPDTPWQKELEDAFPYQETADQ 643

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQH
Sbjct: 644  LTTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQH 703

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE   +  +   + V  ++         +A+E +  G   ++IGTH L    I++  L L
Sbjct: 704  YETFSERFEGFPVNVAAMSRFQTTKEINEAIEGLETGTVDVVIGTHKLLNPKIKFKDLGL 763

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 764  VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 823

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T +       +V   ++  L  G + +++  +++     +  S+ ++ ++L     + 
Sbjct: 824  VLTYVGAYEDA-QVTAAVRRELLRGGQVFYVHNRVQ-----DISSIADKIHTLVPE--AH 875

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH
Sbjct: 876  VGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 935

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    GF +A +DL+ R  G 
Sbjct: 936  QLRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGN 995

Query: 633  ILGIKQSG 640
            +LG +QSG
Sbjct: 996  LLGDEQSG 1003


>gi|322690788|ref|YP_004220358.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            longum JCM 1217]
 gi|320455644|dbj|BAJ66266.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            longum JCM 1217]
          Length = 1194

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/428 (31%), Positives = 230/428 (53%), Gaps = 17/428 (3%)

Query: 219  EWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W +  A+ R    E+    I L   R++ K   G   + +    +++    P+  T  Q
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRAK---GFAFSPDTPWQKELEDAFPYQETADQ 643

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQH
Sbjct: 644  LTTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQH 703

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE   +  +   + V  ++         +A+E +  G   ++IGTH L    I++  L L
Sbjct: 704  YETFSERFEGFPVNVAAMSRFQTTKEINEAIEGLETGTVDVVIGTHKLLNPKIKFKDLGL 763

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 764  VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 823

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T +       +V   ++  L  G + +++  +++     +  S+ ++ ++L     + 
Sbjct: 824  VLTYVGAYEDA-QVTAAVRRELLRGGQVFYVHNRVQ-----DISSIADKIHTLVPE--AH 875

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH
Sbjct: 876  VGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 935

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    GF +A +DL+ R  G 
Sbjct: 936  QLRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGN 995

Query: 633  ILGIKQSG 640
            +LG +QSG
Sbjct: 996  LLGDEQSG 1003


>gi|290968874|ref|ZP_06560411.1| transcription-repair coupling factor [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781170|gb|EFD93761.1| transcription-repair coupling factor [Megasphaera genomosp. type_1
           str. 28L]
          Length = 1095

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/403 (32%), Positives = 205/403 (50%), Gaps = 19/403 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  A+  I   M +   M  ++ GDVG GKT VA+ A+  AV  G Q  ++ P
Sbjct: 546 PYEETADQLKAVAHIKAAMEKPYPMDCLVCGDVGFGKTEVAMRAIFKAVMGGKQVAVLVP 605

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHY+   +      +   ++        R++ L R   G   ++IGTH+L    
Sbjct: 606 TTVLAQQHYQTFTERLSPFGVKCAVLNRFCSYKERKEILARTLTGDVDVLIGTHSLLNKK 665

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++    L++VDE+ RFGV Q+ K    A    VL ++ATPIPRTL ++ +   ++  I 
Sbjct: 666 VKFKNPGLLVVDEEQRFGVAQKEKWKAWAETIDVLSLSATPIPRTLHMSLVNLREMCVIE 725

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERF 507
             P  R P++T +      D  I R  V+  +  G + +++  +++         + E  
Sbjct: 726 TPPTDRFPVQTYV---TEYDARIVRDAVMREKRRGGQVFFVYNRVD-----TMARMQEEL 777

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            +L    T  I + HG+MS    E  M  F  G   LL+ ++++E G+DV +A+ I+I +
Sbjct: 778 AALLPELT--IRMAHGQMSGGKLEEAMFDFYEGKYDLLLCSSLVENGLDVANANTILIYD 835

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAE 622
           A+HFGL+QL+Q+RGRVGR   ++     Y P   LS+ +  RL  +K  TE   GF IA 
Sbjct: 836 ADHFGLSQLYQMRGRVGRSHHLAYAYFFYRPQKVLSEVAEKRLEAIKEFTELGSGFKIAM 895

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            DL+ R  G +LG +Q G          ++  +LE A K  KH
Sbjct: 896 RDLEIRGAGNLLGREQHG--NIAGVGFAMYCQMLEAAIKRVKH 936


>gi|317481857|ref|ZP_07940884.1| transcription-repair coupling factor [Bifidobacterium sp.
            12_1_47BFAA]
 gi|316916648|gb|EFV38043.1| transcription-repair coupling factor [Bifidobacterium sp.
            12_1_47BFAA]
          Length = 1194

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/428 (31%), Positives = 230/428 (53%), Gaps = 17/428 (3%)

Query: 219  EWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W +  A+ R    E+    I L   R++ K   G   + +    +++    P+  T  Q
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRAK---GFAFSPDTPWQKELEDAFPYQETADQ 643

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQH
Sbjct: 644  LTTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQH 703

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE   +  +   + V  ++         +A+E +  G   ++IGTH L    I++  L L
Sbjct: 704  YETFSERFEGFPVNVAAMSRFQTTKEINEAIEGLETGTVDVVIGTHKLLNPKIKFKDLGL 763

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 764  VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 823

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T +       +V   ++  L  G + +++  +++     +  S+ ++ ++L     + 
Sbjct: 824  VLTYVGAYEDA-QVTAAVRRELLRGGQVFYVHNRVQ-----DISSIADKIHTLVPE--AH 875

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH
Sbjct: 876  VGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 935

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    GF +A +DL+ R  G 
Sbjct: 936  QLRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGN 995

Query: 633  ILGIKQSG 640
            +LG +QSG
Sbjct: 996  LLGDEQSG 1003


>gi|322688798|ref|YP_004208532.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            infantis 157F]
 gi|320460134|dbj|BAJ70754.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            infantis 157F]
          Length = 1194

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/428 (31%), Positives = 230/428 (53%), Gaps = 17/428 (3%)

Query: 219  EWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W +  A+ R    E+    I L   R++ K   G   + +    +++    P+  T  Q
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRAK---GFAFSPDTPWQKELEDAFPYQETADQ 643

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQH
Sbjct: 644  LTTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQH 703

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE   +  +   + V  ++         +A+E +  G   ++IGTH L    I++  L L
Sbjct: 704  YETFSERFEGFPVNVAAMSRFQTTKEINEAIEGLETGTVDVVIGTHKLLNPKIKFKDLGL 763

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 764  VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 823

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T +       +V   ++  L  G + +++  +++     +  S+ ++ ++L     + 
Sbjct: 824  VLTYVGAYEDA-QVTAAVRRELLRGGQVFYVHNRVQ-----DISSIADKIHTLVPE--AH 875

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH
Sbjct: 876  VGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 935

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    GF +A +DL+ R  G 
Sbjct: 936  QLRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGN 995

Query: 633  ILGIKQSG 640
            +LG +QSG
Sbjct: 996  LLGDEQSG 1003


>gi|239622194|ref|ZP_04665225.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            infantis CCUG 52486]
 gi|239514191|gb|EEQ54058.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            infantis CCUG 52486]
          Length = 1194

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/428 (31%), Positives = 230/428 (53%), Gaps = 17/428 (3%)

Query: 219  EWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W +  A+ R    E+    I L   R++ K   G   + +    +++    P+  T  Q
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRAK---GFAFSPDTPWQKELEDAFPYQETADQ 643

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQH
Sbjct: 644  LTTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQH 703

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE   +  +   + V  ++         +A+E +  G   ++IGTH L    I++  L L
Sbjct: 704  YETFSERFEGFPVNVAAMSRFQTTKEINEAIEGLETGTVDVVIGTHKLLNPKIKFKDLGL 763

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 764  VIIDEEQRFGVKHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 823

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T +       +V   ++  L  G + +++  +++     +  S+ ++ ++L     + 
Sbjct: 824  VLTYVGAYEDA-QVTAAVRRELLRGGQVFYVHNRVQ-----DISSIADKIHTLVPE--AH 875

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH
Sbjct: 876  VGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 935

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    GF +A +DL+ R  G 
Sbjct: 936  QLRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGN 995

Query: 633  ILGIKQSG 640
            +LG +QSG
Sbjct: 996  LLGDEQSG 1003


>gi|291277211|ref|YP_003516983.1| transcription-repair coupling factor [Helicobacter mustelae 12198]
 gi|290964405|emb|CBG40255.1| transcription-repair coupling factor [Helicobacter mustelae 12198]
          Length = 991

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 203/377 (53%), Gaps = 21/377 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T+ QE  I++I  DMS    M R+L GDVG GKT VA+ A+ AA + G QA+++ P 
Sbjct: 480 FVLTEDQERCIQEIFADMSSGQVMDRLLSGDVGFGKTEVAMNAIYAACQNGFQALMIVPT 539

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA QHY  +K+  +  +  V  +   +    ++  L+ +  G+  +++GTH+L    +
Sbjct: 540 TLLALQHYHTLKERLKGLR--VARLDRFVSARSKKGILQGLLEGKIDVVVGTHSLL--GV 595

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+++DE+H+FGV+Q+  +   +   H+L M+ATPIPRTL +       +S +  
Sbjct: 596 GFKNLGLIVIDEEHKFGVKQKEAIKSLSKDVHLLSMSATPIPRTLNMALSQIKGMSSLLT 655

Query: 451 KPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P+ R+  KT +     + I EVI R    L    + ++I   I     +N   +     
Sbjct: 656 PPSERQSTKTFVKEKSASLIKEVILR---ELRRNGQVFYIHNNI-----ANIPMIERELK 707

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +L       IA++H ++     E ++ SF      LL+ T+++E GI + +A+ II++ A
Sbjct: 708 ALLPQL--EIALLHSQIDSKTTEEILLSFAEKKTHLLLCTSIVESGIHLPNANTIIVDGA 765

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEE 623
           +HFGLA LHQLRGRVGRG+    C  L      +++ +  RL  L+       G +IA +
Sbjct: 766 DHFGLADLHQLRGRVGRGDREGFCYYLIDDRESITQEATKRLLALEKNSFLGSGAMIAYQ 825

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G +LG  QSG
Sbjct: 826 DLEIRGGGNLLGEAQSG 842


>gi|257057197|ref|YP_003135029.1| transcription-repair coupling factor Mfd [Saccharomonospora viridis
            DSM 43017]
 gi|256587069|gb|ACU98202.1| transcription-repair coupling factor Mfd [Saccharomonospora viridis
            DSM 43017]
          Length = 1199

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 140/428 (32%), Positives = 226/428 (52%), Gaps = 17/428 (3%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W  + AR R A  E+ A  + L   R+      G   + +    +++    PF+ T  Q
Sbjct: 586  DWKKTKARARKAVKEIAAELVQLYAARQAAP---GHAFSPDTPWQRELEDAFPFTETADQ 642

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +AI ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q V++ P  ILAQQH
Sbjct: 643  LAAIDEVKRDMERDVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTILAQQH 702

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
                 +  ++  + ++ ++         + +  +A G+  I+IGTH L Q +++Y  L L
Sbjct: 703  LATFSERMRSFPVTIKGLSRFTDPHEAEQVINGLADGEVDIVIGTHRLLQSNVRYKDLGL 762

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VIVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P
Sbjct: 763  VIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHP 822

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            I T +   +         + +L +G+  Y         + S+      R   L     + 
Sbjct: 823  ILTYVGAYDDKQVAAAIRRELLRDGQVFYV------HNRVSSIERAARRLRELVPE--AR 874

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +   HG+M++   E ++  F      +L+ TT++E G+D+ +A+ +I+E+A+  GLAQLH
Sbjct: 875  VVTAHGQMNEHRLEQIIQGFWEREYDVLVCTTIVETGLDISNANTLIVEHADQLGLAQLH 934

Query: 578  QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRKEGE 632
            QLRGRVGRG E      LY    PL++ ++ RL+ + +NTE   G  +A +DL+ R  G 
Sbjct: 935  QLRGRVGRGRERGYAYFLYPADKPLTETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGN 994

Query: 633  ILGIKQSG 640
            ILG +QSG
Sbjct: 995  ILGAEQSG 1002


>gi|159036485|ref|YP_001535738.1| transcription-repair coupling factor [Salinispora arenicola CNS-205]
 gi|157915320|gb|ABV96747.1| transcription-repair coupling factor [Salinispora arenicola CNS-205]
          Length = 1218

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 226/430 (52%), Gaps = 21/430 (4%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W  S AR R A  E+ A  I L   RK  K   G P   +    +++    P+  T  Q
Sbjct: 606  DWQKSKARARKAVREIAAQLIQLYAARKASK---GHPFGPDTPWQRELEDAFPWQETPDQ 662

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +AI+++ +DM Q   M R++ GDVG GKT +A+ A   A++ G Q  ++ P  +L QQH
Sbjct: 663  LAAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAIQDGRQVAVLVPTTLLVQQH 722

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y    +        +  ++         + L   A G A I+IGTH L Q S ++  L L
Sbjct: 723  YNTFAERMSQFPATIRQLSRFQTSKEAEQTLTMAADGTADIVIGTHRLLQASARFKSLGL 782

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VIVDE+ RFGV+ +  L     +  VL M+ATPIPRTL +   G  ++S I   P  R P
Sbjct: 783  VIVDEEQRFGVEHKEHLKSVRASVDVLSMSATPIPRTLEMAITGIREMSTIATPPEERHP 842

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
            + T +   +         + +L +G + +++  ++E  E+     R +V           
Sbjct: 843  VLTAVGAYDERQVAAAIHRELLRDG-QVFYLHNRVESIERAARRLRELVPE--------- 892

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + +A+ HG++ +   E VM  F      +L+ TT++E GID+ +A+ +I+E A+  GLAQ
Sbjct: 893  ARVAVAHGQLGEEALERVMVGFWEKQFDVLVCTTIVESGIDIPNANTLIVERADLLGLAQ 952

Query: 576  LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRKE 630
            LHQ+RGRVGRG E +    LY    PL+++++ RL+ + ++TE   G  +A +DL+ R  
Sbjct: 953  LHQIRGRVGRGRERAYAYFLYPSDKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGA 1012

Query: 631  GEILGIKQSG 640
            G +LG +QSG
Sbjct: 1013 GNLLGGEQSG 1022


>gi|315452882|ref|YP_004073152.1| transcription-repair coupling factor [Helicobacter felis ATCC
           49179]
 gi|315131934|emb|CBY82562.1| transcription-repair coupling factor [Helicobacter felis ATCC
           49179]
          Length = 988

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 204/381 (53%), Gaps = 27/381 (7%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  QE AI+++L D++  + M R+L GDVG GKT VAL+A+ A   A  Q+ +  P
Sbjct: 477 PFKLTLDQERAIEEVLGDLASGHVMDRLLNGDVGFGKTEVALVAIFALALAKRQSALFVP 536

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA--LERIAHGQAHIIIGTHALFQ 387
             +L+ QHY  ++       I +      + +  R KA  L+ +  G+  +++GTHAL +
Sbjct: 537 TTLLSNQHYASLQARLSPFDITI----AKLDRFSRDKARILKDLQEGRIDVVVGTHALLE 592

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              ++  L LV+VDE+H+FGV+Q+  +   +   H+L M+ATPIPRTL +      DIS 
Sbjct: 593 --AKFKDLGLVVVDEEHKFGVKQKEAIKALSQNVHLLSMSATPIPRTLSMALAQIKDISY 650

Query: 448 ITEKPAGRKPIKTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           +   P  + P +T +    P   + E+I R    L    + ++I   I+     +  SV 
Sbjct: 651 LATPPESKPPSRTFVKEKTP-ALLKEIILR---ELRRKGQVFYIYNHIQ-----SMPSVQ 701

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +    L  H    + I+H +      ES++  F  G  +LL+ T+++E GI + +A+ II
Sbjct: 702 KSLQDLLPHL--RVEILHSKTPAAQAESLILEFAQGGFELLLCTSIVESGIHLPNANTII 759

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFL 619
           I++A+ FGLA LHQLRGRVGRG     C  L      LS ++  RL  L KN+    G  
Sbjct: 760 IDHADSFGLADLHQLRGRVGRGTHEGFCYFLVEDKQDLSPSATKRLLALEKNSSLGSGAH 819

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           IA  DL+ R  G +LG  QSG
Sbjct: 820 IALHDLEIRGGGNLLGSHQSG 840


>gi|23465592|ref|NP_696195.1| transcription-repair coupling factor [Bifidobacterium longum NCC2705]
 gi|23326260|gb|AAN24831.1| transcription-repair coupling factor [Bifidobacterium longum NCC2705]
          Length = 1194

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 126/384 (32%), Positives = 214/384 (55%), Gaps = 14/384 (3%)

Query: 263  QKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            QK L +  P+  T  Q + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G
Sbjct: 628  QKELEDAFPYQETADQLTTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDG 687

Query: 322  GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             Q  ++ P  +L QQHYE  ++  +   + V  ++         + +E +  G   ++IG
Sbjct: 688  KQVAVLVPTTLLVQQHYETFRERFEGFPVNVAAMSRFQTTKEINETIEGLETGTVDVVIG 747

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L    I++  L LVI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G
Sbjct: 748  THKLLNPKIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTG 807

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              ++S +   P  R P+ T +       +V   ++  L  G + +++  +++     +  
Sbjct: 808  IREMSTLATPPEDRLPVLTYVGAYEDA-QVTAAVRRELLRGGQVFYVHNRVQ-----DIS 861

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            S+ ++ ++L     + + I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+
Sbjct: 862  SIADKIHTLVPE--AHVGIAHGKMGEKQLDQIIRDFWHRGIDVLVCTTIIETGLDISNAN 919

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--D 616
             +I+++A+ FGL+QLHQLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    
Sbjct: 920  TLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGS 979

Query: 617  GFLIAEEDLKQRKEGEILGIKQSG 640
            GF +A +DL+ R  G +LG +QSG
Sbjct: 980  GFDVAMKDLELRGTGNLLGDEQSG 1003


>gi|255322616|ref|ZP_05363761.1| ATP-dependent DNA helicase RecG [Campylobacter showae RM3277]
 gi|255300524|gb|EET79796.1| ATP-dependent DNA helicase RecG [Campylobacter showae RM3277]
          Length = 638

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 142/420 (33%), Positives = 204/420 (48%), Gaps = 68/420 (16%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+N+PF+PT  Q +AI D+  D S +  + R++ GDVGSGKTLV L A  +       A+
Sbjct: 220 LKNLPFAPTDDQLNAIADLRADFSGEEAVRRVVMGDVGSGKTLVMLAAALSVYPRA--AL 277

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           IMAP  ILA+Q Y    +   +   ++ + +G+ P+               ++IIGTH L
Sbjct: 278 IMAPTSILAEQIYAEAARLLPDFMRVLLVKSGDKPE-----------FDGVNLIIGTHVL 326

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--------------------------- 418
              S+    L  V++DEQHRFG  QR K+   A                           
Sbjct: 327 LYQSLPAAPL--VMIDEQHRFGSNQREKINALASGELGRDPQLDEADGEFDGKFKEGEQS 384

Query: 419 -----------------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                            T  HV+  +ATPIPRTL +      + S + + P   K I T 
Sbjct: 385 NLTEIVPEDRQAKKADETKAHVVQFSATPIPRTLSMIQSSFAEFSFLKQMPF-EKHIHTQ 443

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           I+      E++  +K  +++GK+   I P +E  + SN++ + E       +F +++ + 
Sbjct: 444 ILQSADFGELLTHIKAQITKGKQVAVIYPLVESSENSNYQGLEEVQGFWRANF-ANVYVT 502

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+  D +KE V+  F+     +L++TTV+EVGI +   S I+I  AE  GLA LHQLRG
Sbjct: 503 HGK--DKEKEQVLREFRE-RGDVLLSTTVVEVGISLPRLSTIVIVGAERLGLASLHQLRG 559

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSG 640
           RVGR      C L       KN  TRL     T DGF IAE DLK R+ G+IL G  Q G
Sbjct: 560 RVGRNGGSGFCFLFTK---LKNPPTRLREFCQTLDGFKIAEIDLKNRQSGDILNGAFQHG 616


>gi|222824038|ref|YP_002575612.1| transcription-repair coupling factor [Campylobacter lari RM2100]
 gi|222539260|gb|ACM64361.1| transcription-repair coupling factor [Campylobacter lari RM2100]
          Length = 979

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 128/396 (32%), Positives = 210/396 (53%), Gaps = 27/396 (6%)

Query: 258 EGKIAQKI----LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           E KI+Q++    +    F  TK Q    ++I QD+     M R+L GDVG GKT +A+ A
Sbjct: 448 ELKISQELQDEFINKAGFFYTKDQSQVCQEITQDLKSSQVMDRLLSGDVGFGKTEIAMNA 507

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +   V++G  A+   P  +L+ QH++ +KK      I V  +        +++ L  +  
Sbjct: 508 IFTCVKSGYTALFFVPTTLLSAQHFKTLKKRFDPFNIEVFKLDRFTSAKEKKQILAFLKE 567

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            +  +++GTH+L    ++   L LV++DE+H+FGV+Q+ KL + +   H+L M+ATPIPR
Sbjct: 568 NKPCVVVGTHSLL--GVECENLGLVVIDEEHKFGVKQKEKLKELSKNSHILSMSATPIPR 625

Query: 434 TL--VLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489
           +L   L+SL    I  +   P  R  ++T +   N   I E I R    L    + ++I 
Sbjct: 626 SLNQALSSLKSYSI--LQTPPEDRLDVRTFVRESNDALIKEAISR---ELRRAGQIFYIH 680

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             I        + +++ F +L       I I+H ++     E  M  F+N    LL+ T+
Sbjct: 681 NHIASIDGCK-KYLLDLFPNL------KILILHSKIDAKTTEEQMLKFENKEYDLLLCTS 733

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTR 607
           ++E GID+ +A+ II+EN++ FG+A LHQLRGRVGR  +   C  L      ++K+S  R
Sbjct: 734 IVESGIDLANANTIIVENSDRFGMADLHQLRGRVGRSFQQGYCYFLIEDKEKITKDSLKR 793

Query: 608 LSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           L+ L++      G ++A  DL+ R  G +LG+ QSG
Sbjct: 794 LTSLESNSYLGSGSVLAYHDLEIRGGGNLLGVDQSG 829


>gi|269125277|ref|YP_003298647.1| transcription-repair coupling factor [Thermomonospora curvata DSM
           43183]
 gi|268310235|gb|ACY96609.1| transcription-repair coupling factor [Thermomonospora curvata DSM
           43183]
          Length = 1168

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 135/379 (35%), Positives = 211/379 (55%), Gaps = 19/379 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q +AI+++  DM +   M R++ GDVG GKT +A+ A   A++ G Q  ++ P
Sbjct: 612 PYTETADQLAAIEEVKADMEKPVPMDRLICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVP 671

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +L QQH     +      ++V+ ++     A   + L  +A G   ++IGTH LF   
Sbjct: 672 TTLLVQQHLSTFAERFAPFPVVVKPLSRFQTDAEVEQTLRGLADGTVDLVIGTHRLFSAQ 731

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            ++  L LVI+DE+ RFGV+ + +L +  T   VL M+ATPIPRTL +   G  ++S I 
Sbjct: 732 ARFKDLGLVIIDEEQRFGVEHKEELKRLRTQVDVLAMSATPIPRTLEMGLTGIREMSTIL 791

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R PI T + P +  +I   I R   +L EG+  +           +  RS+    
Sbjct: 792 TPPEERHPILTFVGPYDDKQIAAAIRR--ELLREGQVFF---------VHNRVRSIDRVA 840

Query: 508 NSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             L E    + IA  HG+M++   E VM  F      +L+ATT++E G+D+ +A+ +I++
Sbjct: 841 AKLKELVPEARIATAHGQMNEHQLEKVMVDFWEKNYDVLVATTIVESGLDIPNANTLIVD 900

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIA 621
            A+ +GL+QLHQLRGRVGRG E      LY P  PLS+ ++ RL+ + ++TE   G  +A
Sbjct: 901 RADTYGLSQLHQLRGRVGRGRERGYAYFLYPPESPLSETAHERLATIAQHTEMGAGMYVA 960

Query: 622 EEDLKQRKEGEILGIKQSG 640
            +DL+ R  G ILG++QSG
Sbjct: 961 MKDLEIRGAGNILGVEQSG 979


>gi|157163925|ref|YP_001466408.1| res subunit family type III restriction enzyme [Campylobacter
           concisus 13826]
 gi|112801637|gb|EAT98981.1| ATP-dependent DNA helicase RecG [Campylobacter concisus 13826]
          Length = 606

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 137/384 (35%), Positives = 209/384 (54%), Gaps = 35/384 (9%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-A 324
           L  +PF+PT  Q +AI DI  D+S      R++ GDVGSGKTLV L   AAA+    Q A
Sbjct: 220 LNGLPFTPTNDQLNAINDIRDDLSAVQAKRRVIMGDVGSGKTLVIL---AAALSVYPQSA 276

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++MAP  IL++Q Y   K+       ++ + +G           ++I     ++I+GTHA
Sbjct: 277 ILMAPTSILSEQIYNEAKRLLPPFVNVMLVRSGE----------KKIDFSGVNLIVGTHA 326

Query: 385 LFQDSIQYYKLI---LVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVL 437
           L      +++L    LV+VDEQHRFG  QR K+ + A++     + +  +ATPIPRTL L
Sbjct: 327 LL-----FHELPNSPLVMVDEQHRFGSNQRKKIEELASSKDERANFVQFSATPIPRTLSL 381

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                ++ S + + P  +K I + I+  +    ++  +K  L+ G +   I P +E  + 
Sbjct: 382 IQSEIVNFSFLKQMPF-KKNITSQILGASEFGFLLTHIKKQLAGGFQVAIIYPLVESSES 440

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           SN++S+ E      ++F  ++ + HG+  D +KE ++  F+    ++L++TTV+EVGI +
Sbjct: 441 SNYQSLSEAQGFWLKNF-KNVFVTHGK--DKEKEEILRRFRE-EGEILLSTTVVEVGISL 496

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              + I+I  AE  GLA LHQLRGRVGR      C L       K +  RL     T DG
Sbjct: 497 PRLNTIVIVGAERLGLATLHQLRGRVGRNGGDGYCFLFTK---LKEAPARLKEFCATNDG 553

Query: 618 FLIAEEDLKQRKEGEIL-GIKQSG 640
           F +AE DLK R+ G+IL G  Q G
Sbjct: 554 FKVAELDLKNRQSGDILNGFFQHG 577


>gi|268679487|ref|YP_003303918.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617518|gb|ACZ11883.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 614

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 166/538 (30%), Positives = 270/538 (50%), Gaps = 56/538 (10%)

Query: 114 KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK 173
           K +F +G +  V+GKI     R+ M+ P  I   +Q +        Y  P      L  K
Sbjct: 89  KALFKQGVECYVSGKISYKNGRLQMLQPRIITQINQLI------PKYKTP------LQNK 136

Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE---WTSPARERLAY 230
            ++E + R   L   + + L  K++   ++  F     P++   FE   +    ++ L +
Sbjct: 137 TVLELMKRHLSLESLLNEGLHVKEAKSLLSLHFP---TPQEVSAFEKQGYPPEIQKCLKF 193

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIA---QKILRNIPFSPTKSQESAIKDILQD 287
            E+         ++K   K++  P     K+A      + ++PF+ T+ Q+  I +I +D
Sbjct: 194 TEIYN------YLKKLSTKKVTFPSC--AKLAGDETAFIASLPFTLTQDQQKVIGEIKRD 245

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
              +N   R++ GDVG GKT+V L ++  A     ++V+MAP  +LA+Q +E  +K+   
Sbjct: 246 FLGENATKRVVMGDVGCGKTMVILSSVMMAYPK--KSVLMAPTTVLARQLFEEARKFLP- 302

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             +   ++T         +A +         +IGTHAL    +   + +LV+VDEQHRFG
Sbjct: 303 LHVKSVLVTQESDVKEDLEAFD--------FMIGTHALLYKELP--QCVLVMVDEQHRFG 352

Query: 408 VQQRLKL----TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            +QR  L    ++KA  PH +  +ATPIPRTL +     +D S I   P   K I T +I
Sbjct: 353 TKQRSLLATLVSKKAWHPHYIQFSATPIPRTLSMIQSSLVDFSFIKMLPYP-KDITTKVI 411

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
                 +++  +   +S+  +   + P +EE +  N++S+ E      ++F  S+ + +G
Sbjct: 412 CREHFKDLVAHIHAEISKHHQCIIVYPLVEESEVINYQSIDEGRGFWEKNF-ESVYVTYG 470

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +  D +KE+++D+FK     LLI+TTV+EVGI +   S I+I  AE  GLA LHQLRGRV
Sbjct: 471 K--DKNKEAILDAFKEKG-NLLISTTVVEVGISLPRLSTIVIVGAERLGLASLHQLRGRV 527

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSG 640
            R      C L  +  L+K+   RL     T DGF IAE DLK R+ G+++ G  QSG
Sbjct: 528 SRNGLKGYCFL--YTNLAKSE--RLEKFSQTLDGFEIAELDLKYRQGGDVVEGSIQSG 581


>gi|237751094|ref|ZP_04581574.1| transcription-repair coupling factor [Helicobacter bilis ATCC
           43879]
 gi|229373539|gb|EEO23930.1| transcription-repair coupling factor [Helicobacter bilis ATCC
           43879]
          Length = 1042

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 130/383 (33%), Positives = 210/383 (54%), Gaps = 28/383 (7%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F+ T+ Q  AI++ L+D+     M R+L GDVG GKT VA+    A+      ++++ P 
Sbjct: 522 FTLTQDQTHAIQESLKDLKSGMIMDRLLNGDVGFGKTEVAMSLCFASALNDFNSIVLVPT 581

Query: 331 GILAQQHYEFIKKYTQNTQI-------IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +L  QH+E  K+   NT++       I +I       A +++A++        II+GTH
Sbjct: 582 TLLCNQHFESFKERLHNTKLPNGKILYIAKI--DRFTTATQKRAIQENFKDNIQIIVGTH 639

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
           +LF   I+   L L+++DE+H+FGV+Q+  L QK+   H+L M+ATPIPRTL +      
Sbjct: 640 SLFNLEIE--NLGLMVIDEEHKFGVKQKELLKQKSLTTHILSMSATPIPRTLNMAYSKLK 697

Query: 444 DISKITEKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
            IS++   P  ++  KT +     + I EVI R    L  G + ++I         +N  
Sbjct: 698 SISELKTPPFFKQESKTFVKVKQDSLIKEVILR---ELRRGGQVFYIF--------NNIA 746

Query: 502 SVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            +    + LH+      I I+H +++  D E  M +F      LL+ T+++E GI + +A
Sbjct: 747 KITTIQSYLHDLLPQLRILILHSQINPKDTEKGMLAFLKKEYDLLLCTSIVESGIHLPNA 806

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR-LSVLKNTE--DG 617
           + III++A +FG+A LHQLRGRVGRG+ +  C LL +  +++++  R LS+ KN+    G
Sbjct: 807 NTIIIDDAHNFGIADLHQLRGRVGRGKHVGFCYLLTNENITQDAAKRLLSLEKNSYLGSG 866

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
             +A  DL+ R  G +LG  QSG
Sbjct: 867 AALAYHDLEIRGGGNLLGEAQSG 889


>gi|32265957|ref|NP_859989.1| transcription-repair coupling factor [Helicobacter hepaticus ATCC
           51449]
 gi|32262006|gb|AAP77055.1| transcription-repair coupling factor [Helicobacter hepaticus ATCC
           51449]
          Length = 1001

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 125/399 (31%), Positives = 209/399 (52%), Gaps = 25/399 (6%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           GI I+ +            F+ T  Q  +I++I  D+S    M R+L GDVG GKT VA+
Sbjct: 464 GIKIDTQNPSLLSFQNACGFTLTHDQIRSIEEIYTDLSSGKVMDRLLSGDVGFGKTEVAM 523

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A+ A   +G QA ++ P  +L  QHY  ++   ++  I V      +  A +++    +
Sbjct: 524 NAIYAVCLSGFQAAMIVPTTLLCAQHYHSLQMRLESFGIRVARCDRFLSTAEKKRLFLGL 583

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            + +  +++GTHAL     ++ KL L++VDE+H+FGV+Q+ ++       H+L M+ATPI
Sbjct: 584 KNNEVDVVVGTHALL--GAEFAKLGLIVVDEEHKFGVKQKERIKALCAHTHLLSMSATPI 641

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWI 488
           PRTL +       +S +   P  R P++T I   N  D +++  +++L E   G + ++I
Sbjct: 642 PRTLNMALSHIKSLSSLHTPPVDRIPVRTFIK--NAKDSLLK--EIILRELRRGGQVFYI 697

Query: 489 CPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              I   +KK    +S++ +           IAI+H ++     E++M  F N    +L+
Sbjct: 698 HNNIATIQKKAQEIQSLLPQL---------KIAILHSKVESTQTENIMLDFANNVYNVLL 748

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNS 604
            T++IE GI + +A+ I++ +A+ FG+A LHQLRGRVGRG +   C  L      ++  +
Sbjct: 749 CTSIIESGIHLPNANTIVVASADRFGIADLHQLRGRVGRGNKEGFCYFLVEDMEVITPEA 808

Query: 605 YTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
             RL  L+       G  +A  DL+ R  G +LG  QSG
Sbjct: 809 KKRLMALEKNSYLGSGENLAYYDLEIRGGGNLLGEAQSG 847


>gi|160931462|ref|ZP_02078858.1| hypothetical protein CLOLEP_00295 [Clostridium leptum DSM 753]
 gi|156869527|gb|EDO62899.1| hypothetical protein CLOLEP_00295 [Clostridium leptum DSM 753]
          Length = 1149

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 131/377 (34%), Positives = 206/377 (54%), Gaps = 17/377 (4%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T+ Q   I++I +DM ++  M R+L GDVG GKT VAL A    V    Q  ++ P 
Sbjct: 614 YEETEDQLRCIQEIKEDMEKEQPMDRLLCGDVGFGKTEVALRAAFKCVTDSKQCALLVPT 673

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QHY+ + +  +   I VEI++       + + L+++  G+  +IIGTH L Q  +
Sbjct: 674 TILAWQHYQTVTQRFEGFPIKVEILSRFRTPKQQAEILKQLKRGEIDMIIGTHRLVQKDV 733

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           Q+  L LVI+DE+ RFGV Q+ +         VL ++ATPIPRTL +   G  D+S + E
Sbjct: 734 QFRDLGLVIIDEEQRFGVAQKERFKSVTKNVDVLTLSATPIPRTLNMALSGIRDMSSLEE 793

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            P  R P++T ++  ++  I++ + R    L  G + Y++  ++E     +   V  R  
Sbjct: 794 APQDRHPVQTYVLEYDQAVINDAVRR---ELRRGGQVYYLHNKVE-----SIERVAARLQ 845

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +  +   + +   HG+M + +   V          +L+ TT+IE G+DV + + IIIE+A
Sbjct: 846 A--QIPEAKVGFGHGKMPEGELSEVWRRVMEQEINVLVCTTIIETGVDVPNVNTIIIEDA 903

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEE 623
           +H GL+QLHQ+RGRVGR    +   L +  +  LS+ S  RL+ ++  TE   GF IA  
Sbjct: 904 DHMGLSQLHQIRGRVGRSSRRAYAYLTFTRNKVLSEISQKRLAAIREFTEFGSGFKIAMR 963

Query: 624 DLKQRKEGEILGIKQSG 640
           DL+ R  G ILG +Q G
Sbjct: 964 DLELRGAGNILGGEQHG 980


>gi|218514824|ref|ZP_03511664.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
           8C-3]
          Length = 520

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 124/389 (31%), Positives = 206/389 (52%), Gaps = 28/389 (7%)

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VAL A   A   G Q  ++ P  +LA+QH++   +  +   + V+  +  +
Sbjct: 4   GDVGFGKTEVALRAAFVAAMNGVQVAVVVPTTLLARQHFKTFSERFRGLPVRVQQASRLV 63

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                    + +A G+  I++GTHAL    I++  L L+++DE+  FGV+ + +L +  +
Sbjct: 64  GAKDLALTKKEVAEGKTDIVVGTHALLGAGIKFANLGLLVIDEEQHFGVKHKERLKELKS 123

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
             HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T I P + +  + E L    
Sbjct: 124 DVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSL-VIRETLMREH 182

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-----IAIIHGRMSDIDKESVM 534
             G +++++CP++ +               +H    S      +A+ HG+M   + E +M
Sbjct: 183 YRGGQSFYVCPRLAD------------LADVHAFLQSDVPELKVAVAHGQMPAGELEDIM 230

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           ++F  G   +L++TT++E G+DV  A+ +I+  A+ FGLAQL+QLRGRVGR  ++ +  L
Sbjct: 231 NAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGLAQLYQLRGRVGR-SKVRAFAL 289

Query: 595 LYHP---PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK---FL 645
              P    L+  +  RL VL++ +    GF +A  DL  R  G +LG +QSG  K   F 
Sbjct: 290 FTLPVNKVLTATADRRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFE 349

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLT 674
           + Q  L +++ E+   D  H     P ++
Sbjct: 350 LYQQMLEEAVAEVKGVDEIHDTGWSPQIS 378


>gi|222823694|ref|YP_002575268.1| ATP-dependent DNA helicase [Campylobacter lari RM2100]
 gi|222538916|gb|ACM64017.1| ATP-dependent DNA helicase [Campylobacter lari RM2100]
          Length = 607

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 207/374 (55%), Gaps = 24/374 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+ + F+PT  Q  AI+DI +D+  K    R++ GDVG GKTL+  I  A+ +    +A+
Sbjct: 216 LKGLEFNPTNDQLLAIEDIKKDLQSKVAKRRVVMGDVGCGKTLI--ILAASLLVYPKKAI 273

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA+Q Y   K+   +  + V ++ G        K  E     QAH IIGTHAL
Sbjct: 274 LMAPTSILAEQIYHEAKRLLPDF-VNVLLLKGGKKDKDLAKLKE-----QAHFIIGTHAL 327

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLG 441
                + ++ +LV++DEQHRFG  QR K+++ +     APH++  +ATPIPRTL +    
Sbjct: 328 IHQ--EEFEAVLVMIDEQHRFGSNQRQKISELSKNSQYAPHIVQFSATPIPRTLSMIQSE 385

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
            ++ S I + P  +K IKT  I       +++++   L++  +   I P + E +  ++ 
Sbjct: 386 LVNFSFIKQMPF-KKDIKTFCIQDKDFKYLLKKIDDELAKNHQVIIIYPLVNESENIDYL 444

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN-GTCKLLIATTVIEVGIDVVDA 560
           S+ E+      +   ++ + HG+  D +K+ ++  F+  GT  +L++TTV+EVGI +   
Sbjct: 445 SL-EQAQGYWINKYKNVYVTHGK--DKNKDQILQEFREKGT--ILLSTTVVEVGISLPRL 499

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           S+I++  AE  GLA LHQLRGRVGR    S C L       K   +RL     T DGF I
Sbjct: 500 SVIVVVGAERLGLATLHQLRGRVGRVGLESFCYLYTK---QKEIPSRLLEFAKTLDGFKI 556

Query: 621 AEEDLKQRKEGEIL 634
           AE DLK R  G++L
Sbjct: 557 AELDLKNRLSGDLL 570


>gi|330897623|gb|EGH29042.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 485

 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 118/313 (37%), Positives = 175/313 (55%), Gaps = 17/313 (5%)

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           QQHY   +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   
Sbjct: 1   QQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDDVKIKN 60

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA 
Sbjct: 61  LGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPAR 120

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHE 512
           R  ++T ++  N+   + E L   L  G + Y++   ++  EK  ++   +V        
Sbjct: 121 RLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPE------ 173

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FG
Sbjct: 174 ---ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFG 230

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
           LAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ 
Sbjct: 231 LAQLHQLRGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVLATNDLEI 290

Query: 628 RKEGEILGIKQSG 640
           R  GE+LG  QSG
Sbjct: 291 RGAGELLGDGQSG 303


>gi|294794147|ref|ZP_06759284.1| transcription-repair coupling factor [Veillonella sp. 3_1_44]
 gi|294455717|gb|EFG24089.1| transcription-repair coupling factor [Veillonella sp. 3_1_44]
          Length = 1098

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 124/382 (32%), Positives = 214/382 (56%), Gaps = 25/382 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  TK Q  A  +I + M +   M R+L GDVG GKT VA+ A+  AV +G Q  ++ P
Sbjct: 546 PYEETKDQLQATAEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLVP 605

Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             +LAQQH++ F+ ++     + V+++      + +++ L+ +  G   I+IGTH+L   
Sbjct: 606 TTVLAQQHFQTFLNRFAP-FGVKVDVLNRFRTTSEKKQILKGVEDGSIDILIGTHSLLNK 664

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + +  L +++VDE+ RFGV Q+ K  + A+   VL ++ATPIPRTL ++ +G  ++S I
Sbjct: 665 KVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGVREMSVI 724

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R P++T ++  + ++ + + +K  L+ G + Y++  +            V   N
Sbjct: 725 NTPPEERLPVQTYVVEYD-MNLIADAIKRELARGGQVYFVYNR------------VASIN 771

Query: 509 SLHEHFTSSI-----AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + E   S++     AI HG+M+    E +M  F  G   +L++T++IE G+D+ +A+ I
Sbjct: 772 HMGELLESALPGLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTI 831

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618
           II +A+  GL+QL+Q+RGRVGR    +    +Y P   LS+ +  RL  ++   +   GF
Sbjct: 832 IIYDADRLGLSQLYQMRGRVGRSRRRAYAYFMYRPDKILSEAAEKRLKAIEEFTELGAGF 891

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  G +LG +Q G
Sbjct: 892 KLAMRDLEIRGAGNLLGSQQHG 913


>gi|23335259|ref|ZP_00120496.1| COG1197: Transcription-repair coupling factor (superfamily II
            helicase) [Bifidobacterium longum DJO10A]
 gi|189439640|ref|YP_001954721.1| transcription-repair coupling factor (superfamily II helicase)
            [Bifidobacterium longum DJO10A]
 gi|189428075|gb|ACD98223.1| Transcription-repair coupling factor (superfamily II helicase)
            [Bifidobacterium longum DJO10A]
          Length = 1194

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 132/428 (30%), Positives = 229/428 (53%), Gaps = 17/428 (3%)

Query: 219  EWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W +  A+ R    E+    I L   R++ K   G   + +    +++    P+  T  Q
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRAK---GFAFSPDTPWQKELEDAFPYQETADQ 643

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQH
Sbjct: 644  LTTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQH 703

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE   +  +   + V  ++         + +E +  G   ++IGTH L    I++  L L
Sbjct: 704  YETFSERFEGFPVNVAAMSRFQTTKEINETIEGLETGTVDVVIGTHKLLNPKIKFKDLGL 763

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 764  VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 823

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T +       +V   ++  L  G + +++  +++     +  S+ ++ ++L     + 
Sbjct: 824  VLTYVGAYEDA-QVTAAVRRELLRGGQVFYVHNRVQ-----DISSIADKIHTLVPE--AH 875

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH
Sbjct: 876  VGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 935

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    GF +A +DL+ R  G 
Sbjct: 936  QLRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGN 995

Query: 633  ILGIKQSG 640
            +LG +QSG
Sbjct: 996  LLGDEQSG 1003


>gi|313892911|ref|ZP_07826488.1| transcription-repair coupling factor [Veillonella sp. oral taxon
           158 str. F0412]
 gi|313442264|gb|EFR60679.1| transcription-repair coupling factor [Veillonella sp. oral taxon
           158 str. F0412]
          Length = 1055

 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 123/382 (32%), Positives = 215/382 (56%), Gaps = 25/382 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  A  +I + M +   M R+L GDVG GKT VA+ A+  AV +G Q  ++ P
Sbjct: 546 PYEETEDQLQATAEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLVP 605

Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             +LAQQH++ F+ ++     + V+++      A +++ L+ + +G   ++IGTH+L   
Sbjct: 606 TTVLAQQHFQTFLNRFAP-FGVKVDVLNRFRSTAEKKQVLKGVENGSIDVLIGTHSLLNK 664

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + +  L +++VDE+ RFGV Q+ K  + A+   VL ++ATPIPRTL ++ +G  ++S I
Sbjct: 665 KVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGVREMSVI 724

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R P++T ++  + ++ V + +K  L+ G + Y++  +            V   N
Sbjct: 725 NTPPEERLPVQTYVVEYD-MNLVADAIKRELARGGQVYFVYNR------------VASIN 771

Query: 509 SLHEHFTSSI-----AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + E   +++     AI HG+M+    E +M  F  G   +L++T++IE G+D+ +A+ I
Sbjct: 772 HMGELLEAALPDLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTI 831

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618
           II +A+  GL+QL+Q+RGRVGR    +    +Y P   LS+ +  RL  ++   +   GF
Sbjct: 832 IIYDADRLGLSQLYQMRGRVGRSRRRAYAYFMYRPDKMLSEAAEKRLKAIEEFTELGAGF 891

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  G +LG +Q G
Sbjct: 892 KLAMRDLEIRGAGNLLGSQQHG 913


>gi|300790028|ref|YP_003770319.1| transcription-repair coupling factor [Amycolatopsis mediterranei
           U32]
 gi|299799542|gb|ADJ49917.1| transcription-repair coupling factor [Amycolatopsis mediterranei
           U32]
          Length = 1184

 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 132/380 (34%), Positives = 211/380 (55%), Gaps = 21/380 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF+ T  Q +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 623 PFTETNDQLAAIDEVKADMERGVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 682

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQH     +  ++  + ++ ++    +      LE++A G+  I+IGTH L Q  
Sbjct: 683 TTLLAQQHLNTFHERMRSFPVTIKGLSRFTNKTESDIILEQLASGEVDIVIGTHRLLQTG 742

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+Y  L LVIVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I 
Sbjct: 743 IRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTIL 802

Query: 450 EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
             P  R PI T +   +  ++   I R   +L +G + +++  ++   EK     R +V 
Sbjct: 803 TPPEDRHPILTYVGAYDDKQVGAAIRR--ELLRDG-QVFYVHNRVSSIEKAARRIRELVP 859

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                     + +   HG+M++   E ++  F      +L+ TT++E G+D+ +A+ +++
Sbjct: 860 E---------ARVVTAHGQMNEDKLEKIIQGFWENEYDVLVCTTIVETGLDISNANTLLV 910

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLI 620
           E  +  GLAQLHQLRGRVGRG E      LY P  PL++ ++ RL+ + +NTE   G  +
Sbjct: 911 ERGDLLGLAQLHQLRGRVGRGRERGYAYFLYPPEAPLTETAHDRLATIAQNTELGAGMAV 970

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A +DL+ R  G ILG +QSG
Sbjct: 971 AMKDLEIRGAGNILGAEQSG 990


>gi|257460753|ref|ZP_05625854.1| transcription-repair-coupling factor [Campylobacter gracilis
           RM3268]
 gi|257442084|gb|EEV17226.1| transcription-repair-coupling factor [Campylobacter gracilis
           RM3268]
          Length = 986

 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 129/402 (32%), Positives = 211/402 (52%), Gaps = 21/402 (5%)

Query: 248 KKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           K+E+  G+ I  E     K L    FS T  Q+ A+  IL D+     M R+L GDVG G
Sbjct: 443 KRELVRGLVIKNESADYAKFLSASGFSYTSDQQKAVGAILADLQSGKVMDRLLSGDVGFG 502

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT VA+ A+ A + +G   +   P  +L+ QHY  + +  +  +I V  +        + 
Sbjct: 503 KTEVAMNAIFACIRSGHSVLFFVPTTLLSSQHYATLSERFREFEIPVFKLDRFSSARQKS 562

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L+R+  G+A +++GTH+L   ++    L L+I+DE+H+FGV+Q+ +L +K+ A H+L 
Sbjct: 563 EILKRLQSGEAIVVVGTHSLL--NLNPANLGLIIIDEEHKFGVKQKERLKEKSAASHLLS 620

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGK 483
           M+ATPIPR+L +        S +   P  R  ++T    + + DE I  E +   L  G 
Sbjct: 621 MSATPIPRSLNMALSSIKSYSTLLSPPQDRLDVRTF---VKQWDEKIVKEAISRELRRGG 677

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           + +++   I   + +  + ++E   SL       I I+H ++     E  +  F  G   
Sbjct: 678 QIFYVHNHIATMQSAK-KKLLEILPSLK------ILILHSKIDAKTTEDEILKFVAGGYD 730

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLS 601
           LL+ T+++E GI +   + II+ENA+ FG+A LHQLRGRVGR  +   C  L      L+
Sbjct: 731 LLLCTSIVESGIHMPRVNTIIVENADKFGIADLHQLRGRVGRSNKQGFCYFLIEDKTALT 790

Query: 602 KNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           +++  RL  L++      G ++A  DL+ R  G +LG  QSG
Sbjct: 791 QDALKRLVALESNSFLGSGSVLAYHDLEIRGGGNLLGEAQSG 832


>gi|317479277|ref|ZP_07938412.1| transcription-repair coupling factor [Bacteroides sp. 4_1_36]
 gi|316904565|gb|EFV26384.1| transcription-repair coupling factor [Bacteroides sp. 4_1_36]
          Length = 983

 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 198/365 (54%), Gaps = 14/365 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q ++E G   + +  + +++  +  +  T  Q  A  D+  DM     M R++ 
Sbjct: 582 LIKLYSQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSKATSDVKADMESTRPMDRLVC 641

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++  K+  +     VE ++   
Sbjct: 642 GDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKERLKGLPCRVEYLSRAR 701

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A  +  ++ +A G+ +I+IGTH +    +++  L L+I+DE+ +FGV  + KL Q   
Sbjct: 702 TAAQAKAVVKGLAEGEVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQLKV 761

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
               L MTATPIPRTL  + +G  D+S I   P  R PI+T +   N  +E+I + +   
Sbjct: 762 NVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFN--EEIIADAVNFE 819

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           +S   + +++  +I    E   ++++ER      H     + I HG+M   + E ++  F
Sbjct: 820 MSRNGQVFFVNNRISNLFE--LKAMIER------HIPDCRVCIGHGQMEPAELEKIIFDF 871

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG-EEIS-SCILL 595
            N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  +++S +C   
Sbjct: 872 VNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSIKKLSVTCWHR 931

Query: 596 YHPPL 600
             PPL
Sbjct: 932 LCPPL 936


>gi|45657330|ref|YP_001416.1| transcription-repair coupling factor [Leptospira interrogans serovar
            Copenhageni str. Fiocruz L1-130]
 gi|45600568|gb|AAS70053.1| transcription-repair coupling factor [Leptospira interrogans serovar
            Copenhageni str. Fiocruz L1-130]
          Length = 1186

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/373 (31%), Positives = 204/373 (54%), Gaps = 15/373 (4%)

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q  AI+ + +D+     M R++ GDVG GKT VA+ A      AG Q +++AP  IL
Sbjct: 644  TPDQIEAIEAVKKDLESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIMMLAPTTIL 703

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            A QHY   K   +N  + VE+++     A  R  L   + G+  +++GTHA+    ++  
Sbjct: 704  ALQHYNTFKNRFENYPVRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHAILSSKLKPK 763

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L L+I+DE+ RFGV  +  + +      VL +TATPIPRTL +   G  ++S I   P 
Sbjct: 764  NLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRELSIIATPPK 823

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             R+ ++T ++  +  D + + ++  +  G + +++  ++E        ++ E  N L + 
Sbjct: 824  NRQSVETYVLEEDD-DLISDAIRNEIQRGGQVFYLYNRVE--------TIEEETNYLSKL 874

Query: 514  FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                SI I+HG+M++ + E  +  F N    +L+ TT+IE GID+ + + + ++ A+ FG
Sbjct: 875  VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 934

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            L+QL+Q+RGRVGR +  +   +L      +++ +  RL+ +   ++   GF +A  DL+ 
Sbjct: 935  LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 994

Query: 628  RKEGEILGIKQSG 640
            R  G +LG +QSG
Sbjct: 995  RGAGNLLGKEQSG 1007


>gi|217978360|ref|YP_002362507.1| transcription-repair coupling factor [Methylocella silvestris BL2]
 gi|217503736|gb|ACK51145.1| transcription-repair coupling factor [Methylocella silvestris BL2]
          Length = 1176

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 138/419 (32%), Positives = 218/419 (52%), Gaps = 26/419 (6%)

Query: 232 ELLAGQIALLLMRKQFKKE---IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
           E+ AG I +   R  F KE   +  P N    +  +     P+  T+ Q + I  +L+DM
Sbjct: 590 EMAAGLIKIAAAR--FTKEAAKLAPPEN----LYDEFCAGFPYDETEDQLTTIDAVLEDM 643

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           +    M R++ GDVG GKT VAL A  AA   G Q  ++ P  +LA+QHY+       + 
Sbjct: 644 ASGRPMDRLVCGDVGFGKTEVALRAAFAAAIEGKQVAVIVPTTLLARQHYKNFSSRFAHL 703

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            + V  ++  +  A  + A    A G   I++GTHA     + Y  L LVI+DE+  FGV
Sbjct: 704 PVKVAQMSRMVSAADLKAAKAGAASGDIDIVVGTHAALGKGVTYKDLGLVIIDEEQHFGV 763

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           + + +L +     HVL ++ATPIPRTL L   G  ++S I   P  R  ++T I P + +
Sbjct: 764 KHKERLKELRAEVHVLTLSATPIPRTLQLALTGVRELSIIATPPVDRLAVRTFITPFDTL 823

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSD 527
             V E L      G +++++CP+I++ +++           L +H       I HG+M  
Sbjct: 824 -LVREALLRERYRGGQSFYVCPRIDDIQDAA--------AFLRQHVPEVKFVIAHGQMPA 874

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            + E  M +F +G   +L++T ++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR  
Sbjct: 875 TELEDKMSAFYDGQFDVLLSTAIVESGLDIPTANTLIVHRADMFGLAQLYQLRGRVGR-S 933

Query: 588 EISSCILLYHP---PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           ++ +  L   P    ++  +  RL VL++ +    GF +A  DL  R  G +LG  QSG
Sbjct: 934 KVRAYALFTVPAERAMTAQAEKRLKVLQSLDTLGAGFELASHDLDIRGAGNLLGDDQSG 992


>gi|24215213|ref|NP_712694.1| transcription-repair coupling factor [Leptospira interrogans serovar
            Lai str. 56601]
 gi|24196293|gb|AAN49712.1|AE011418_8 transcription-repair coupling factor [Leptospira interrogans serovar
            Lai str. 56601]
          Length = 1186

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/373 (31%), Positives = 204/373 (54%), Gaps = 15/373 (4%)

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q  AI+ + +D+     M R++ GDVG GKT VA+ A      AG Q +++AP  IL
Sbjct: 644  TPDQIEAIEAVKKDLESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIMMLAPTTIL 703

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            A QHY   K   +N  + VE+++     A  R  L   + G+  +++GTHA+    ++  
Sbjct: 704  ALQHYNTFKNRFENYPVRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHAILSSKLKPK 763

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L L+I+DE+ RFGV  +  + +      VL +TATPIPRTL +   G  ++S I   P 
Sbjct: 764  NLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRELSIIATPPK 823

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             R+ ++T ++  +  D + + ++  +  G + +++  ++E        ++ E  N L + 
Sbjct: 824  NRQSVETYVLEEDD-DLISDAIRNEIQRGGQVFYLYNRVE--------TIEEETNYLSKL 874

Query: 514  FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                SI I+HG+M++ + E  +  F N    +L+ TT+IE GID+ + + + ++ A+ FG
Sbjct: 875  VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 934

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            L+QL+Q+RGRVGR +  +   +L      +++ +  RL+ +   ++   GF +A  DL+ 
Sbjct: 935  LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 994

Query: 628  RKEGEILGIKQSG 640
            R  G +LG +QSG
Sbjct: 995  RGAGNLLGKEQSG 1007


>gi|154147980|ref|YP_001406586.1| ATP-dependent DNA helicase RecG [Campylobacter hominis ATCC
           BAA-381]
 gi|153803989|gb|ABS50996.1| ATP-dependent DNA helicase RecG [Campylobacter hominis ATCC
           BAA-381]
          Length = 611

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 169/530 (31%), Positives = 262/530 (49%), Gaps = 54/530 (10%)

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           G  KK K   I    ++ F   Q +N  ++  +  +     +DL    + E      +L 
Sbjct: 87  GAFKKGKKFFIHGKSNFNFGFWQFINPKIVTKIGEISPHYKLDLKDASVQE------ILK 140

Query: 187 EWIEKDLLQKKSFPSIAEAFNI-IH-NPRKA----KDFEWTSPARERLAYDELLAGQIAL 240
           ++I  D L ++    +   F I IH N + +    K+ +     R+ L++ E+ +     
Sbjct: 141 KYINYDALIQEGLNEVEANFIIQIHKNSQNSVKIIKNLDLNEKDRKILSFIEIFS----- 195

Query: 241 LLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             ++K   K++  P  N         +  +PF PT  Q+ AI DI  D+S      R++ 
Sbjct: 196 -YLKKLRAKKLDFPCKNFALTDISAWISKLPFKPTNDQQKAIDDIKNDLSSPIASKRVIM 254

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           GDVGSGKTLV L   AAA+    Q + +MAP  ILA+Q +   K+   +    + + +G 
Sbjct: 255 GDVGSGKTLVIL---AAALMNYPQISYLMAPTSILAEQIFNEAKRLLPDFMNTILVKSGE 311

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                     + +    A+++IGTHAL   ++   K  LV+VDEQHRFG  QR K+ +  
Sbjct: 312 ----------KTLNLNGANLVIGTHALLYHNLA--KSNLVMVDEQHRFGSNQRDKIAELT 359

Query: 419 TA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                  + L  +ATPIPRTL +     +  S + + P  +K I+T II  N   E++  
Sbjct: 360 KDGKYRANFLQFSATPIPRTLSMIQSEYVSFSFLKQMPF-KKDIRTTIIQNNGFSELLRH 418

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           +K  +S G++   + P +EE + S ++S+ E  +   + F  ++ I HG+  D  K+  +
Sbjct: 419 IKSEISNGRQVIIVYPLVEESQTSIYQSLDEGTSFWQKRF-KNVMITHGKDKD--KDKKL 475

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F++ +  LL+ TTV+EVGI +   SII+I  AE  GLA LHQLRGRVGR   I  C L
Sbjct: 476 EIFRD-SGSLLLTTTVVEVGISLPRLSIIVIVGAEKMGLASLHQLRGRVGRNGGIGYCYL 534

Query: 595 ---LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSG 640
              L   P       RL     T DGF +AE DLK R+ G++L G  Q G
Sbjct: 535 YTKLESIP------ERLKEFAATLDGFKVAEIDLKNRQAGDLLDGTIQHG 578


>gi|152993498|ref|YP_001359219.1| ATP-dependent DNA helicase RecG [Sulfurovum sp. NBC37-1]
 gi|151425359|dbj|BAF72862.1| ATP-dependent DNA recombinase RecG [Sulfurovum sp. NBC37-1]
          Length = 602

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 137/380 (36%), Positives = 211/380 (55%), Gaps = 30/380 (7%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           N+PF+ T+ Q++ I  I +D++++++   R++ GDVGSGKT+V L ++  A+    ++++
Sbjct: 219 NLPFTLTEEQQNVIVQIRKDLAREDKAAKRMIVGDVGSGKTMVILASVMMALPH--KSIL 276

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL- 385
           MAP  +LA Q YE   K+   +  I  ++ G     +R          +A  IIGTHAL 
Sbjct: 277 MAPTSLLALQLYEEACKHLPKSVRIALVMQGKDEGNYR----------EADFIIGTHALL 326

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLG 441
           F++ +   +  LV+VDEQHRFG +QR  L    ++    PH L  +ATPIPRT  +    
Sbjct: 327 FKEDLP--EASLVMVDEQHRFGTKQRQSLEALVSSGERKPHYLQFSATPIPRTQAMMESE 384

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
            +D+S IT  P  R+ + T  I      +++  +K  +++  +   I P +EE  E  ++
Sbjct: 385 LLDVSLITTTPFERE-VLTQTIGREDFPDLMTHIKEEIAQQHQVLIIYPLVEESSEVPYQ 443

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           S+ E        F  ++ + HG+  D  KE V+  F+     +L+ATTV+EVGI +   +
Sbjct: 444 SLDESRGFWESRF-DNVYVTHGK--DKQKEDVLLEFRE-KGNILLATTVVEVGISLPKLT 499

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
           +I+I  AE  GLA LHQLRGRVGR    S C L  +   SK ++ RL     T +GF IA
Sbjct: 500 LIVIVGAERLGLATLHQLRGRVGRNGLKSWCYLFSN---SKENF-RLQQFAQTTNGFDIA 555

Query: 622 EEDLKQRKEGEIL-GIKQSG 640
           + DLK R  G+IL G  QSG
Sbjct: 556 KLDLKFRDSGDILDGTIQSG 575


>gi|303271977|ref|XP_003055350.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
 gi|226463324|gb|EEH60602.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
          Length = 1468

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 100/225 (44%), Positives = 140/225 (62%), Gaps = 5/225 (2%)

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-VL 479
            PH+L MTATPIPRTL +   G++ IS I EKPAGR PI T I+         ++  V  +
Sbjct: 1187 PHMLTMTATPIPRTLAMCEHGEMAISCIDEKPAGRLPIFTKILMSKDHHIAYDKYMVDAV 1246

Query: 480  SEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
              G + Y I P +EE K      F+S  E    L E +   +  I+HG+ S  +K + + 
Sbjct: 1247 KSGSQCYIILPLVEESKAERMERFKSAEEEHKRLVEKYPEVTFGILHGKQSSDEKATALK 1306

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             FK+G  ++L+ATTVIEVG+DV +AS+IIIE+A+ FG+AQLHQ+RGRVGRG+  SSC LL
Sbjct: 1307 DFKDGKTQVLVATTVIEVGVDVPNASLIIIEDADRFGVAQLHQMRGRVGRGKTASSCFLL 1366

Query: 596  YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
                    +  R+ VL+ + +GF +AE DL+ R  G++ G +QSG
Sbjct: 1367 LGDEAGYPAQQRMKVLEQSNNGFKVAESDLRNRGPGDLTGTRQSG 1411



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/257 (39%), Positives = 147/257 (57%), Gaps = 15/257 (5%)

Query: 172  KKIIVEAL-SRLPVLPE----WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226
            +K  V AL + LP  P      +E  +L +    S  EA   IH   + +  E  + ARE
Sbjct: 858  QKAAVAALRANLPADPLTVALGVESTVLPELKLVSHLEAMTHIH---RGESVEMVAAARE 914

Query: 227  RLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R+A++ELL  Q  LLL R + +K  G  ++ V  ++  ++   + FS T  QE A+++IL
Sbjct: 915  RIAFEELLELQTELLLKRVEAQKSGGEGLSIVSTRLCDELRSVLDFSLTGGQEQAMEEIL 974

Query: 286  QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH----YEFI 341
             DM+  + MLR+LQGDVG GKT+VA +A+ AAV  G Q   MAP  +LA QH     E  
Sbjct: 975  HDMAGTSPMLRMLQGDVGCGKTVVAALAILAAVGNGHQGAFMAPTEVLATQHERTFAEIF 1034

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
             +  +  +I+  ++TG+ P+  R  AL  I  G A I+IGTHAL  D++++  L L +VD
Sbjct: 1035 SRLAKPPKIV--LLTGSTPKRARDAALADIESGAADIVIGTHALVHDAVKFKSLGLAVVD 1092

Query: 402  EQHRFGVQQRLKLTQKA 418
            EQH+FGV QR  L QK 
Sbjct: 1093 EQHKFGVDQRAMLLQKG 1109


>gi|224418611|ref|ZP_03656617.1| ATP-dependent DNA helicase RecG [Helicobacter canadensis MIT
           98-5491]
 gi|253826841|ref|ZP_04869726.1| ATP-dependent DNA recombinase RecG [Helicobacter canadensis MIT
           98-5491]
 gi|313142138|ref|ZP_07804331.1| ATP-dependent DNA helicase [Helicobacter canadensis MIT 98-5491]
 gi|253510247|gb|EES88906.1| ATP-dependent DNA recombinase RecG [Helicobacter canadensis MIT
           98-5491]
 gi|313131169|gb|EFR48786.1| ATP-dependent DNA helicase [Helicobacter canadensis MIT 98-5491]
          Length = 613

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 201/379 (53%), Gaps = 30/379 (7%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF  TK QE AI +I   ++ +    R++ GDVG GKT+V   ++  A     ++V+M
Sbjct: 226 SLPFKLTKGQEKAILEIASSLNSQKSARRVIVGDVGCGKTMVIFASVLIAYPK--RSVLM 283

Query: 328 APIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P  ILA+Q Y   +KY  +N ++ +        Q  ++  LE     Q+  +IGTHAL 
Sbjct: 284 VPTSILAKQIYNESQKYLPKNLKVAL------WTQGAKKGDLE-----QSDFVIGTHALL 332

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLT----QKATAPHVLLMTATPIPRTLVLTSLGD 442
              IQ + L  V++DEQHRFG  QR  L     +    PH+L  +ATPIPRTL +     
Sbjct: 333 YQKIQNFAL--VMIDEQHRFGTAQRNTLERMFEKNQKRPHILQFSATPIPRTLAMIESEF 390

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +D S I + P  +K I + +I      E+I  ++  +S   +   I P +EE K  ++ S
Sbjct: 391 LDFSFILDLPF-KKDITSRVIAKADFKELIAHIQREISLQHQVLIIYPLVEESKAMDYVS 449

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E       HF S + + HG+  D  KE V++ F++    +L+ATTV+EVGI +   S 
Sbjct: 450 LKEGEEFWRRHF-SGVYVTHGK--DKLKEEVLEEFRD-KGNILLATTVVEVGISLPKLST 505

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+I  AE  GLA LHQLRGRV R      C L  +    + +  RL      + GF +A+
Sbjct: 506 IVIVGAERLGLATLHQLRGRVSRNGLKGYCFLYSN----QANNERLKRFCQIQSGFEVAQ 561

Query: 623 EDLKQRKEGEIL-GIKQSG 640
            DL+ R  G++L G +QSG
Sbjct: 562 MDLEYRNSGDLLSGEQQSG 580


>gi|183221209|ref|YP_001839205.1| transcription-repair coupling factor [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911300|ref|YP_001962855.1| transcription-repair coupling factor [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775976|gb|ABZ94277.1| Transcription-repair coupling factor [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779631|gb|ABZ97929.1| Transcription-repair coupling factor (TRCF; ATP-dependent helicase
           Mfd) [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 1140

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 208/375 (55%), Gaps = 19/375 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q SAI+ +  D+     M R++ GDVG GKT VA+ A    + AG Q +++ P  IL
Sbjct: 602 TPDQISAIEAVKLDLESSRPMDRLVCGDVGYGKTEVAIRAAFKVIMAGKQVMLLTPTTIL 661

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           + QH+   K+  +N  I +  ++     A  R+ L+    G+  ++IGTHA+    ++  
Sbjct: 662 SLQHFNTFKQRYENYPIKIAFVSRFRSPAEIREDLKNFTEGKIDMLIGTHAILSSKVKPK 721

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ +FGV  +  + +      VL +TATPIPRTL +   G  ++S I+  P 
Sbjct: 722 NLGLLIIDEEQKFGVTHKESIKKFKNLVDVLTLTATPIPRTLHMALTGIRELSIISTAPK 781

Query: 454 GRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSL 510
            R+ ++T ++  +  D +I E ++  +  G + +++  ++E  E++ S  RS+V      
Sbjct: 782 NRQSVETYVLEED--DTLIQEAIRKEIERGGQVFYLYNRVESIEEEASYVRSLVPEV--- 836

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 S+ I+HG++++ + E  +  F      +L+ TT+IE GID+ + + +I++ A+ 
Sbjct: 837 ------SVGILHGQLTEDEIEETLVEFYERKYDILVTTTIIESGIDMPNVNTLIVKKADM 890

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDL 625
           FGL+QL+Q+RGRVGR +  +   + Y     +++ +  RL+ +   ++   GF +A  DL
Sbjct: 891 FGLSQLYQIRGRVGRSDRKAYAYMFYPSKKLMTELAEKRLNTIFEYQELGSGFKVAMRDL 950

Query: 626 KQRKEGEILGIKQSG 640
           + R  G +LG +QSG
Sbjct: 951 EIRGAGNLLGKEQSG 965


>gi|84497836|ref|ZP_00996633.1| putative transcriptional-repair coupling factor [Janibacter sp.
            HTCC2649]
 gi|84381336|gb|EAP97219.1| putative transcriptional-repair coupling factor [Janibacter sp.
            HTCC2649]
          Length = 1204

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 204/374 (54%), Gaps = 17/374 (4%)

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q S+I ++  DM ++  M R++ GDVG GKT +A+ A   A++ G Q  ++ P  +L
Sbjct: 648  TPDQLSSIDEVKADMEREVPMDRLICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLL 707

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             QQH +   +      + V+ ++    +      LE +A+G   ++IGTH L  DS+ + 
Sbjct: 708  VQQHLQTFTERYAPFPVTVKPLSRFQSKKETDLVLEGLANGSVDLVIGTHRLLSDSVHFK 767

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L LV+VDE+ RFGV+ + +L Q  TA  VL M+ATPIPRTL +   G  ++S +   P 
Sbjct: 768  DLGLVVVDEEQRFGVEHKEQLKQLRTAVDVLAMSATPIPRTLEMAVTGIREMSTLATPPE 827

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLH 511
             R P+ T +             + +L EG + ++I  ++   EK  +  R +V       
Sbjct: 828  ERHPVLTYVGAYEEKQITAAVRREMLREG-QVFYIHNKVSTIEKAAARIRELVPE----- 881

Query: 512  EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                + IA  HG+M +   E V+  F      +L+ TT++E G+D+ +A+ +I+E A+  
Sbjct: 882  ----ARIATAHGKMGEHRLEQVVLDFWENKFDVLVCTTIVETGLDISNANTLIVERADRL 937

Query: 572  GLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GL+QLHQLRGRVGRG E +    LY P  PL++ ++ RL  + +  D   G  +A +DL+
Sbjct: 938  GLSQLHQLRGRVGRGRERAYSYFLYPPENPLTETAHDRLQTIASHTDLGAGMQVAMKDLE 997

Query: 627  QRKEGEILGIKQSG 640
             R  G +LG +QSG
Sbjct: 998  IRGAGNLLGGEQSG 1011


>gi|291517134|emb|CBK70750.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            longum F8]
          Length = 1194

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 132/428 (30%), Positives = 228/428 (53%), Gaps = 17/428 (3%)

Query: 219  EWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W +  A+ R    E+    I L   R++ K   G   + +    +++    P+  T  Q
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRAK---GFAFSPDTPWQKELEDAFPYQETADQ 643

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQH
Sbjct: 644  LTTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQH 703

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE   +  +   + V  ++         + +E +  G   ++IGTH L    I++  L L
Sbjct: 704  YETFSERFEGFPVNVAAMSRFQTTKEINETIEGLETGTVDVVIGTHKLLNPKIKFKDLGL 763

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV  +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 764  VIIDEEQRFGVGHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 823

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T +       +V   ++  L  G + +++  +++     +  S+ ++ ++L     + 
Sbjct: 824  VLTYVGAYEDA-QVTAAVRRELLRGGQVFYVHNRVQ-----DISSIADKIHTLVPE--AH 875

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH
Sbjct: 876  VGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 935

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    GF +A +DL+ R  G 
Sbjct: 936  QLRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGN 995

Query: 633  ILGIKQSG 640
            +LG +QSG
Sbjct: 996  LLGDEQSG 1003


>gi|227546191|ref|ZP_03976240.1| transcription-repair coupling factor helicase [Bifidobacterium longum
            subsp. infantis ATCC 55813]
 gi|227213172|gb|EEI81044.1| transcription-repair coupling factor helicase [Bifidobacterium longum
            subsp. infantis ATCC 55813]
          Length = 1194

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 132/428 (30%), Positives = 228/428 (53%), Gaps = 17/428 (3%)

Query: 219  EWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W +  A+ R    E+    I L   R++ K   G   + +    +++    P+  T  Q
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRAK---GFAFSPDTPWQKELEDAFPYQETADQ 643

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQH
Sbjct: 644  LTTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQH 703

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE   +  +   + V  ++         + +E +  G   ++IGTH L    I++  L L
Sbjct: 704  YETFSERFEGFPVNVAAMSRFQTTKEINETIEGLETGTVDVVIGTHKLLNPKIKFKDLGL 763

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV  +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 764  VIIDEEQRFGVGHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 823

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T +       +V   ++  L  G + +++  +++     +  S+ ++ ++L     + 
Sbjct: 824  VLTYVGAYEDA-QVTAAVRRELLRGGQVFYVHNRVQ-----DISSIADKIHTLVPE--AH 875

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH
Sbjct: 876  VGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 935

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    GF +A +DL+ R  G 
Sbjct: 936  QLRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGN 995

Query: 633  ILGIKQSG 640
            +LG +QSG
Sbjct: 996  LLGDEQSG 1003


>gi|312898732|ref|ZP_07758121.1| transcription-repair coupling factor [Megasphaera micronuciformis
           F0359]
 gi|310620163|gb|EFQ03734.1| transcription-repair coupling factor [Megasphaera micronuciformis
           F0359]
          Length = 1092

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/416 (29%), Positives = 217/416 (52%), Gaps = 23/416 (5%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA ++  L  +++       P +      Q+     P+  T+ Q  A+  I + M +   
Sbjct: 511 LAEKLVALYAKREITDGYAFPPDT--PFQQEFEEAFPYEETQDQLKAVAAIKESMEKPVP 568

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M  ++ GDVG GKT VA+ A   AV  G Q  ++ P  +LAQQHY+   +  ++  ++ +
Sbjct: 569 MDCLVCGDVGFGKTEVAVRAAFKAVMGGKQVAVLVPTTVLAQQHYQTFSERFRSFGVVCD 628

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++        R++ L+++  GQ  ++IGTH++   ++++    L+IVDE+ RFGV Q+ K
Sbjct: 629 VLNRFRSIKERKEILQKVEAGQIDVLIGTHSILNKNVKFKDAGLLIVDEEQRFGVAQKEK 688

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEV 471
               AT   VL ++ATPIPRTL ++ +    +  I   P  R P++T +   +   + + 
Sbjct: 689 WKTWATGIDVLTLSATPIPRTLHMSLVHLRQMCLIETPPTERLPVQTYVTEYDGAIVRDA 748

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDID 529
           I R K     G + +++  ++         + +ER     E      +I + HG+M+   
Sbjct: 749 IMREK---RRGGQVFFVYNRV---------ATMERMKVELEALVPEVTIGMAHGQMTGSV 796

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
            E+ M  F  G   +L+ ++++E G+D+ +A+ II+ +A+ FGL+QL+Q+RGRVGR    
Sbjct: 797 LEANMFDFYEGEYDVLLCSSLVENGLDIANANTIIVYDADRFGLSQLYQMRGRVGRSHRT 856

Query: 590 SSCILLY--HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
           +    LY  +  L++ +  RL  +K  TE   GF IA  DL+ R  G +LG +Q G
Sbjct: 857 AYAYFLYRRNKILNEVAEKRLQAVKEFTELGSGFKIAMRDLEIRGAGNLLGREQHG 912


>gi|285808213|gb|ADC35747.1| transcription-repair coupling factor [uncultured bacterium 293]
          Length = 1139

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 197/370 (53%), Gaps = 13/370 (3%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q +AI D+ +DMS    M R++ GDVG GKT VA+ A   AV  G Q  ++      A 
Sbjct: 596 DQAAAIADVSRDMSDPAPMDRLICGDVGYGKTEVAMRAAMRAVLDGKQVAVLXXXXXXAF 655

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QH++  +K      + VE+++   P    ++ L     G+  ++IGTH L    + +  L
Sbjct: 656 QHWKTFRKRFAPFPVRVEMVSRFRPPKEIKQVLAEAGQGKVDVLIGTHRLLSKDVAFADL 715

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L+++DE+ RFGVQ + +L         L ++ATPIPRTL +   G  D+S I   P  R
Sbjct: 716 GLLVIDEEQRFGVQSKERLKHLRRIVDCLTLSATPIPRTLQMGLSGIRDMSVIETPPKDR 775

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             I+T I+  +  D +   ++  L+   + +++  ++E     +  SV      L     
Sbjct: 776 LAIQTSIVKFS-TDTITSAVRQELAREGQVFFVHNRVE-----SIYSVAALIQRLVPE-- 827

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + + + HG+M + + E  M +F  G   +L+ATT+IE G+D+  A+ +I+  A+ +GLAQ
Sbjct: 828 ARVVVAHGQMGEGELERNMLAFVEGRGDVLVATTIIENGLDIPRANTLIVNRADRYGLAQ 887

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           L QLRGRVGR +  +   L+  P   LS+ +  RL+ +++  +   GF IA  DL+ R  
Sbjct: 888 LXQLRGRVGRSDRRAYAWLMVPPDTVLSEIARKRLAAMRDFSELGAGFRIAALDLELRGA 947

Query: 631 GEILGIKQSG 640
           G +LG +QSG
Sbjct: 948 GNLLGGEQSG 957


>gi|152993618|ref|YP_001359339.1| transcription-repair coupling factor [Sulfurovum sp. NBC37-1]
 gi|151425479|dbj|BAF72982.1| transcription-repair coupling factor [Sulfurovum sp. NBC37-1]
          Length = 994

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 143/441 (32%), Positives = 240/441 (54%), Gaps = 28/441 (6%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +A QI  L  ++  KK  GI + ++ +     +    F  T+ QE AI D+L DMS    
Sbjct: 443 IASQIINLSAQRHLKK--GIRMKIDREEHTLFMSKAGFLHTEDQERAINDMLDDMSSGRM 500

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+L  DVG GKT VA+  M  AV  G QA+++AP  +L+ QHY+ +K+   +    V 
Sbjct: 501 MDRLLSADVGFGKTEVAMNGMFVAVRNGYQAMMIAPTTLLSSQHYKSLKERFYDYGFKVA 560

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            +        +   L+ +A G   +++GTHAL +   ++  L LVI+DE+H+FGV+Q+  
Sbjct: 561 KLDRFSTTKEKNAILKGLAEGTIDVVVGTHALLK--AKFKNLALVIIDEEHKFGVKQKEA 618

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI- 472
           L + +   H+L M+ATPIPR+L +        S+I   P  R+ ++T +   +  D+VI 
Sbjct: 619 LKEMSIDVHLLSMSATPIPRSLNMALSEVKSFSEILTPPTERQGVRTFVKSYD--DKVIK 676

Query: 473 ERLKVVLSEGKKAYWI---CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           E +   +  G + +++      I+EKK    + ++E    L       +A++H ++S  +
Sbjct: 677 EAILREMRRGGQIFYVFNSIAGIDEKK----KQLLEILPKLR------VAVLHSKISAKE 726

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
            E  M  F++G   +L++T+++E GI +  A+ +I+E A++FG+A LHQLRGRVGRG   
Sbjct: 727 TEDEMLKFEDGEYDVLLSTSIVESGIHMPHANTMIVEGADNFGIADLHQLRGRVGRGGRE 786

Query: 590 SSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK- 643
             C  +      L++N+  RL  L++  D   G ++A  DL+ R  G I+G  QSG  K 
Sbjct: 787 GYCYFMVTDKDRLTENAKKRLIALESHSDLGSGAVLAFHDLEIRGGGNIIGEAQSGHIKQ 846

Query: 644 --FLIAQPELHDSLLEIARKD 662
             + +    L D++ E++ +D
Sbjct: 847 IGYSLYLRMLEDAIKELSGQD 867


>gi|296271090|ref|YP_003653722.1| transcription-repair coupling factor [Thermobispora bispora DSM
           43833]
 gi|296093877|gb|ADG89829.1| transcription-repair coupling factor [Thermobispora bispora DSM
           43833]
          Length = 1164

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 206/376 (54%), Gaps = 13/376 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  TK Q  AI+++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 608 PYVETKDQLEAIEEVKRDMERPVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 667

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +L  QH     +      + V  ++     A  R+ L+ +  G   ++IGTH L    
Sbjct: 668 TTLLVHQHLSTFGERFAGFPVTVRPLSRFQSDAEIRETLDGLREGTVDVVIGTHRLLSPD 727

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+IVDE+ RFGV+ +  + +  T   VL M+ATPIPRTL +   G  ++S I 
Sbjct: 728 VKFKDLGLLIVDEEQRFGVEHKEAMKRMRTEVDVLAMSATPIPRTLEMGLTGIREMSTIL 787

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R P+ T + P +   ++   ++  L    + +++  ++      +   V  R   
Sbjct: 788 TPPEERHPVLTFVGPYDE-KQIAAAIRRELMRDGQTFFVHNRV-----RSIDRVAARLAE 841

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L     + IA+ HG+M++   E +M  F      +L+ TT++E G+DV +A+ +I++ A+
Sbjct: 842 LVPE--ARIAVAHGQMNEAQLEKIMVDFWERAYDVLVCTTIVESGLDVPNANTLIVDRAD 899

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEED 624
            +GLAQLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A +D
Sbjct: 900 SYGLAQLHQLRGRVGRGRERGYAYFLYPPDVPLTETAHERLATIAQHTEMGAGMYVAMKD 959

Query: 625 LKQRKEGEILGIKQSG 640
           L+ R  G ILG +QSG
Sbjct: 960 LEIRGAGNILGTEQSG 975


>gi|224282806|ref|ZP_03646128.1| transcription-repair coupling factor [Bifidobacterium bifidum NCIMB
            41171]
 gi|313139965|ref|ZP_07802158.1| transcription-repair coupling factor [Bifidobacterium bifidum NCIMB
            41171]
 gi|313132475|gb|EFR50092.1| transcription-repair coupling factor [Bifidobacterium bifidum NCIMB
            41171]
          Length = 1199

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/385 (32%), Positives = 211/385 (54%), Gaps = 16/385 (4%)

Query: 263  QKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            QK L +  P+  T  Q + I D+  DM +   M R++ GDVG GKT +A+ A   A++ G
Sbjct: 638  QKELEDAFPYQETTDQLTTIDDVKSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAIQDG 697

Query: 322  GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             Q  ++ P  +L QQH+E   +  +   + V  ++         + +E +  G   ++IG
Sbjct: 698  KQVAVLVPTTLLVQQHHETFTERYEGFPVTVAAMSRFQTTKEINETIEGLETGGVDVVIG 757

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L    I++  L LVI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G
Sbjct: 758  THKLLNPKIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTG 817

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              ++S +   P  R P+ T +       +V   ++  L  G + +++  ++++       
Sbjct: 818  IREMSTLATPPEDRLPVLTYVGAYEDA-QVTAAVRRELLRGGQVFYVHNRVQD------- 869

Query: 502  SVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             + +    +HE    + + I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A
Sbjct: 870  -IAKTAAKIHELVPEARVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNA 928

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE-- 615
            + +I+++A+ FGL+QLHQLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT   
Sbjct: 929  NTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPMTQQSHDRLATIAQNTALG 988

Query: 616  DGFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A +DL+ R  G +LG +QSG
Sbjct: 989  SGFDVAMKDLELRGTGNLLGDEQSG 1013


>gi|218673155|ref|ZP_03522824.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
           GR56]
          Length = 585

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/354 (31%), Positives = 193/354 (54%), Gaps = 22/354 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q++AI  +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P
Sbjct: 244 PYDETEDQDNAIDAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAVVVP 303

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH++   +  +   + ++  +  +         + ++ G+  I++GTHAL    
Sbjct: 304 TTLLARQHFKTFSERFRGLPVRIQQASRLVGAKELALTKKEVSEGKTDIVVGTHALLGAG 363

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           IQ+  L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT
Sbjct: 364 IQFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLIT 423

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R  ++T I P + +  + E L      G +++++CP++ +               
Sbjct: 424 TPPVDRMAVRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLAD------------LTD 470

Query: 510 LHEHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +H    S      +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I
Sbjct: 471 VHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLI 530

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE 615
           +  A+ FGLAQL+QLRGRVGR  ++ +  L   P    L+  +  RL+VL++ +
Sbjct: 531 VHRADMFGLAQLYQLRGRVGR-SKVRAFALFTLPVNNVLTATADRRLNVLQSLD 583


>gi|315453841|ref|YP_004074111.1| ATP-dependent DNA helicase [Helicobacter felis ATCC 49179]
 gi|315132893|emb|CBY83521.1| ATP-dependent DNA helicase [Helicobacter felis ATCC 49179]
          Length = 624

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 144/425 (33%), Positives = 209/425 (49%), Gaps = 31/425 (7%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           + L Y E      AL   + +F  +     N+E    Q  L+N+PF+ T  Q+ AI  I 
Sbjct: 199 QALKYIEAFVYMRALSAKKWEFPSKFARHANLEN--LQIFLKNLPFTLTSDQQRAITSIQ 256

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            DM  +    R++ GDVG GKT+V L ++A       ++++MAP  +LA+Q Y+   K+ 
Sbjct: 257 ADMQGQVAAKRLIMGDVGCGKTMVILASVALTFPH--KSLLMAPTSVLAKQLYQEALKFL 314

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
               I V ++ G       +K  E + H     IIGT  L   S+   ++ LVI DEQHR
Sbjct: 315 P-PHIKVSLLLGGT----SKKIKEEVNHST--FIIGTTTLLYASLDTKEVGLVISDEQHR 367

Query: 406 FGVQQRLKLTQKA--------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           FG +QR  L   A         +PH L  +ATPIPRTL +     I  + I +KP   K 
Sbjct: 368 FGSKQRHDLEIYARTEIGGVVCSPHYLQFSATPIPRTLAMMEAKFIKTTLIKDKPY-TKD 426

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           I+T +I       ++  ++  +   K+   I P +EE    ++  + +  N    HF   
Sbjct: 427 IETTLIDRTHFQALLHHIRHQIDSKKQVAIIYPLVEESVRQDYMPLRQAENYWKTHF-EG 485

Query: 518 IAIIHGRMSDIDKESVMDSF-KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           + +  G+  D +KE +++ F K G   +L+ATT+IEVGI +   S I++   E  GLA L
Sbjct: 486 VYVTSGK--DANKEEILEDFAKEG--HILLATTLIEVGISLPKLSTIVVVGPERLGLATL 541

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-G 635
           HQLRGRV R      C L  H         RL     T DGF IA  DLK R  G++L G
Sbjct: 542 HQLRGRVARLGGKGYCFLFTHYVHD----VRLLAFSQTLDGFEIANLDLKHRNAGDLLQG 597

Query: 636 IKQSG 640
            +QSG
Sbjct: 598 TQQSG 602


>gi|213692705|ref|YP_002323291.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            infantis ATCC 15697]
 gi|213524166|gb|ACJ52913.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            infantis ATCC 15697]
 gi|320458861|dbj|BAJ69482.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            infantis ATCC 15697]
          Length = 1194

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 132/428 (30%), Positives = 227/428 (53%), Gaps = 17/428 (3%)

Query: 219  EWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W +  A+ R    E+    I L   R++ K   G   + +    +++    P+  T  Q
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRAK---GFAFSPDTPWQKELEDAFPYQETADQ 643

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQH
Sbjct: 644  LTTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQH 703

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE   +  +   + V  ++           +E +  G   ++IGTH L    I +  L L
Sbjct: 704  YETFSERFEGFPVNVAAMSRFQTTKEINGTVEGLRSGTVDVVIGTHKLLNPKITFKDLGL 763

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 764  VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 823

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T +       +V   ++  L  G + +++  +++     +  S+ ++ ++L     + 
Sbjct: 824  VLTYVGAYEDA-QVTAAVRRELLRGGQVFYVHNRVQ-----DIASIADKIHTLVPE--AH 875

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH
Sbjct: 876  VGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 935

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    GF +A +DL+ R  G 
Sbjct: 936  QLRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGN 995

Query: 633  ILGIKQSG 640
            +LG +QSG
Sbjct: 996  LLGDEQSG 1003


>gi|296453842|ref|YP_003660985.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            longum JDM301]
 gi|296183273|gb|ADH00155.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            longum JDM301]
          Length = 1194

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 126/384 (32%), Positives = 211/384 (54%), Gaps = 14/384 (3%)

Query: 263  QKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            QK L +  P+  T  Q + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G
Sbjct: 628  QKELEDAFPYQETADQLTTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDG 687

Query: 322  GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             Q  ++ P  +L QQHYE   +  +   + V  ++           +E +  G   ++IG
Sbjct: 688  KQVAVLVPTTLLVQQHYETFSERFEGFPVNVAAMSRFQTTKEINGTVEGLRSGTVDVVIG 747

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L    I +  L LVI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G
Sbjct: 748  THKLLNPKITFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTG 807

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              ++S +   P  R P+ T +       +V   ++  L  G + +++  +++     +  
Sbjct: 808  IREMSTLATPPEDRLPVLTYVGAYEDA-QVTAAVRRELLRGGQVFYVHNRVQ-----DIA 861

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            S+ ++ ++L     + + I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+
Sbjct: 862  SIADKIHTLVPE--AHVGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNAN 919

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--D 616
             +I+++A+ FGL+QLHQLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    
Sbjct: 920  TLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGS 979

Query: 617  GFLIAEEDLKQRKEGEILGIKQSG 640
            GF +A +DL+ R  G +LG +QSG
Sbjct: 980  GFDVAMKDLELRGTGNLLGDEQSG 1003


>gi|311064109|ref|YP_003970834.1| transcription-repair coupling factor [Bifidobacterium bifidum
            PRL2010]
 gi|310866428|gb|ADP35797.1| Mfd Transcription-repair coupling factor [Bifidobacterium bifidum
            PRL2010]
          Length = 1199

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/385 (32%), Positives = 211/385 (54%), Gaps = 16/385 (4%)

Query: 263  QKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            QK L +  P+  T  Q + I D+  DM +   M R++ GDVG GKT +A+ A   A++ G
Sbjct: 638  QKELEDAFPYQETTDQLTTIDDVKSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAIQDG 697

Query: 322  GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             Q  ++ P  +L QQH+E   +  +   + V  ++         + +E +  G   ++IG
Sbjct: 698  KQVAVLVPTTLLVQQHHETFTERYEGFPVTVAAMSRFQTTKEINETIEGLETGGVDVVIG 757

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L    I++  L LVI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G
Sbjct: 758  THKLLNPKIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTG 817

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              ++S +   P  R P+ T +       +V   ++  L  G + +++  ++++       
Sbjct: 818  IREMSTLATPPEDRLPVLTYVGAYEDA-QVTAAVRRELLRGGQVFYVHNRVQD------- 869

Query: 502  SVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             + +    +HE    + + I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A
Sbjct: 870  -IAKTAAKIHELVPEARVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNA 928

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE-- 615
            + +I+++A+ FGL+QLHQLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT   
Sbjct: 929  NTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPMTQQSHDRLATIAQNTALG 988

Query: 616  DGFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A +DL+ R  G +LG +QSG
Sbjct: 989  SGFDVAMKDLELRGTGNLLGDEQSG 1013


>gi|310287260|ref|YP_003938518.1| transcription-repair coupling factor (superfamily II helicase)
            [Bifidobacterium bifidum S17]
 gi|309251196|gb|ADO52944.1| Transcription-repair coupling factor (superfamily II helicase)
            [Bifidobacterium bifidum S17]
          Length = 1199

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/385 (32%), Positives = 211/385 (54%), Gaps = 16/385 (4%)

Query: 263  QKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            QK L +  P+  T  Q + I D+  DM +   M R++ GDVG GKT +A+ A   A++ G
Sbjct: 638  QKELEDAFPYQETTDQLTTIDDVKSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAIQDG 697

Query: 322  GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             Q  ++ P  +L QQH+E   +  +   + V  ++         + +E +  G   ++IG
Sbjct: 698  KQVAVLVPTTLLVQQHHETFTERYEGFPVTVAAMSRFQTTKEINETIEGLETGGVDVVIG 757

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L    I++  L LVI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G
Sbjct: 758  THKLLNPKIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTG 817

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              ++S +   P  R P+ T +       +V   ++  L  G + +++  ++++       
Sbjct: 818  IREMSTLATPPEDRLPVLTYVGAYEDA-QVTAAVRRELLRGGQVFYVHNRVQD------- 869

Query: 502  SVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             + +    +HE    + + I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A
Sbjct: 870  -IAKTAAKIHELVPEARVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNA 928

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE-- 615
            + +I+++A+ FGL+QLHQLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT   
Sbjct: 929  NTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPMTQQSHDRLATIAQNTALG 988

Query: 616  DGFLIAEEDLKQRKEGEILGIKQSG 640
             GF +A +DL+ R  G +LG +QSG
Sbjct: 989  SGFDVAMKDLELRGTGNLLGDEQSG 1013


>gi|269798420|ref|YP_003312320.1| transcription-repair coupling factor [Veillonella parvula DSM 2008]
 gi|269095049|gb|ACZ25040.1| transcription-repair coupling factor [Veillonella parvula DSM 2008]
          Length = 1098

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/389 (31%), Positives = 216/389 (55%), Gaps = 25/389 (6%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+     P+  T+ Q  A  +I + M +   M R+L GDVG GKT VA+ A+  AV +G 
Sbjct: 539 QEFEDAFPYEETEDQLQATAEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGK 598

Query: 323 QAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q  ++ P  +LAQQH++ F+ ++     + V+++      + +++ L+ +  G   I+IG
Sbjct: 599 QVAVLVPTTVLAQQHFQTFLNRFAP-FGVKVDVLNRFRTTSEKKQILKGVEDGSIDILIG 657

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH+L    + +  L +++VDE+ RFGV Q+ K  + A+   VL ++ATPIPRTL ++ +G
Sbjct: 658 THSLLNKKVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVG 717

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             ++S I   P  R P++T ++  + ++ + + +K  L+ G + Y++  +          
Sbjct: 718 VREMSVINTPPEERLPVQTYVVEYD-MNLIADAIKRELARGGQVYFVYNR---------- 766

Query: 502 SVVERFNSLHEHFTSSI-----AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             V   N + E   S++     A+ HG+M+    E +M  F  G   +L++T++IE G+D
Sbjct: 767 --VASINHMGELLESALPGLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLD 824

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
           + +A+ III +A+  GL+QL+Q+RGRVGR    +    +Y P   LS+ +  RL  ++  
Sbjct: 825 IPNANTIIIYDADRLGLSQLYQMRGRVGRSRRRAYAYFMYRPDKILSEAAEKRLKAIEEF 884

Query: 615 ED---GFLIAEEDLKQRKEGEILGIKQSG 640
            +   GF +A  DL+ R  G +LG +Q G
Sbjct: 885 TELGAGFKLAMRDLEIRGAGNLLGSQQHG 913


>gi|294792288|ref|ZP_06757436.1| transcription-repair coupling factor [Veillonella sp. 6_1_27]
 gi|294457518|gb|EFG25880.1| transcription-repair coupling factor [Veillonella sp. 6_1_27]
          Length = 1098

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 121/382 (31%), Positives = 214/382 (56%), Gaps = 25/382 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  A  +I + M +   M R+L GDVG GKT VA+ A+  AV +G Q  ++ P
Sbjct: 546 PYEETEDQLQATAEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLVP 605

Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             +LAQQH++ F+ ++     + V+++      + +++ L+ +  G   ++IGTH+L   
Sbjct: 606 TTVLAQQHFQTFLNRFAP-FGVKVDVLNRFRTTSEKKQILKGVEDGSIDVLIGTHSLLNK 664

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + +  L +++VDE+ RFGV Q+ K  + A+   VL ++ATPIPRTL ++ +G  ++S I
Sbjct: 665 KVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGVREMSVI 724

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R P++T ++  + ++ + + +K  L+ G + Y++  +            V   N
Sbjct: 725 NTPPEERLPVQTYVVEYD-MNLIADAIKRELARGGQVYFVYNR------------VASIN 771

Query: 509 SLHEHFTSSI-----AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + E   S++     A+ HG+M+    E +M  F  G   +L++T++IE G+D+ +A+ I
Sbjct: 772 HMGELLESALPGLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTI 831

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618
           II +A+  GL+QL+Q+RGRVGR    +    +Y P   LS+ +  RL  ++   +   GF
Sbjct: 832 IIYDADRLGLSQLYQMRGRVGRSRRRAYAYFMYRPDKILSEAAEKRLKAIEEFTELGAGF 891

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  G +LG +Q G
Sbjct: 892 KLAMRDLEIRGAGNLLGSQQHG 913


>gi|282850657|ref|ZP_06260036.1| transcription-repair coupling factor [Veillonella parvula ATCC
           17745]
 gi|282580150|gb|EFB85554.1| transcription-repair coupling factor [Veillonella parvula ATCC
           17745]
          Length = 1098

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 121/382 (31%), Positives = 214/382 (56%), Gaps = 25/382 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  A  +I + M +   M R+L GDVG GKT VA+ A+  AV +G Q  ++ P
Sbjct: 546 PYEETEDQLQATAEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLVP 605

Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             +LAQQH++ F+ ++     + V+++      + +++ L+ +  G   ++IGTH+L   
Sbjct: 606 TTVLAQQHFQTFLNRFAP-FGVKVDVLNRFRTTSEKKQILKGVEDGSIDVLIGTHSLLNK 664

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + +  L +++VDE+ RFGV Q+ K  + A+   VL ++ATPIPRTL ++ +G  ++S I
Sbjct: 665 KVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGVREMSVI 724

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R P++T ++  + ++ + + +K  L+ G + Y++  +            V   N
Sbjct: 725 NTPPEERLPVQTYVVEYD-MNLIADAIKRELARGGQVYFVYNR------------VASIN 771

Query: 509 SLHEHFTSSI-----AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + E   S++     A+ HG+M+    E +M  F  G   +L++T++IE G+D+ +A+ I
Sbjct: 772 HMGELLESALPGLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTI 831

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GF 618
           II +A+  GL+QL+Q+RGRVGR    +    +Y P   LS+ +  RL  ++   +   GF
Sbjct: 832 IIYDADRLGLSQLYQMRGRVGRSRRRAYAYFMYRPDKILSEAAEKRLKAIEEFTELGAGF 891

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
            +A  DL+ R  G +LG +Q G
Sbjct: 892 KLAMRDLEIRGAGNLLGSQQHG 913


>gi|255321495|ref|ZP_05362653.1| transcription-repair coupling factor [Campylobacter showae RM3277]
 gi|255301351|gb|EET80610.1| transcription-repair coupling factor [Campylobacter showae RM3277]
          Length = 985

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 206/382 (53%), Gaps = 19/382 (4%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+N  F+ T+ QE A  DI  D+     M R+L GDVG GKT VA+ A+   V++G QA+
Sbjct: 461 LQNAGFAYTRDQERASSDIANDLKSGKVMDRLLSGDVGFGKTEVAMNAIFKCVKSGFQAL 520

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
              P  +L+ QH++ +K+      + V  +        +  A++ +  GQ  + +GTH+L
Sbjct: 521 FFVPTTLLSSQHFKSLKERLGKFDVSVFKLDRFTSAKEKAAAVKALEAGQPCVCVGTHSL 580

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
              S++   L L+I+DE+H+FGV+Q+ KL + ++A HVL M+ATPIPR+L +        
Sbjct: 581 L--SVKPSNLGLIIIDEEHKFGVKQKEKLKEISSASHVLSMSATPIPRSLNMALSSVKGY 638

Query: 446 SKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           S +   P+ R  ++T    +   DE  V E +   L  G + ++I   I    ++  + +
Sbjct: 639 SVLQTPPSSRLDVRT---SVREWDEKAVKEAVMRELRRGGQIFYIHNHIATMPQAK-KQI 694

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           ++   +L       I  +H ++     E  M  F+NG   +L++T+++E GI + + + I
Sbjct: 695 LDIMPNLR------ILTLHSKIDAKTTEEEMMKFENGEYDVLLSTSIVESGIHLPNVNTI 748

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGF 618
           IIE A  FG+A LHQLRGRVGR ++ + C  L      LS ++  RL  L++      G 
Sbjct: 749 IIEGANKFGIADLHQLRGRVGRSDKQAYCYFLVEDKNALSADALKRLVALESNSFLGSGS 808

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
           ++A  DL+ R  G ++G  QSG
Sbjct: 809 VLAYHDLEIRGGGNLVGEAQSG 830


>gi|238018751|ref|ZP_04599177.1| hypothetical protein VEIDISOL_00609 [Veillonella dispar ATCC 17748]
 gi|237864517|gb|EEP65807.1| hypothetical protein VEIDISOL_00609 [Veillonella dispar ATCC 17748]
          Length = 1098

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 211/379 (55%), Gaps = 19/379 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q  A  +I   M +   M R+L GDVG GKT VA+ A+  AV +G Q  ++ P
Sbjct: 546 PYEETEDQLQATAEIKASMEKPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLVP 605

Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             +LAQQH++ F+ ++     + V+++      A +++ L+ +  G   ++IGTH+L   
Sbjct: 606 TTVLAQQHFQTFLNRFAP-FGVKVDVLNRFRSTAEKKQVLKGVEDGSIDVLIGTHSLLNK 664

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + +  L +++VDE+ RFGV Q+ K  + A    VL ++ATPIPRTL ++ +G  ++S I
Sbjct: 665 KVVFKDLGMLVVDEEQRFGVAQKEKWKEWANNIDVLTLSATPIPRTLHMSLVGVREMSVI 724

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R P++T ++  + ++ V + +K  L+ G + Y++  ++         + +    
Sbjct: 725 NTPPEERLPVQTYVVEYD-MNLVADAIKRELARGGQVYFVYNRV---------ASINHMG 774

Query: 509 SLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            L E     +  AI HG+M+    E +M  F  G   +L++T++IE G+D+ +A+ III 
Sbjct: 775 ELLEEALPGLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIY 834

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621
           +A+  GL+QL+Q+RGRVGR    +    +Y P   LS+ +  RL  ++   +   GF +A
Sbjct: 835 DADRLGLSQLYQMRGRVGRSRRRAYAYFMYRPDKMLSEAAEKRLKAIEEFTELGAGFKLA 894

Query: 622 EEDLKQRKEGEILGIKQSG 640
             DL+ R  G +LG +Q G
Sbjct: 895 MRDLEIRGAGNLLGSQQHG 913


>gi|268680233|ref|YP_003304664.1| transcription-repair coupling factor [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268618264|gb|ACZ12629.1| transcription-repair coupling factor [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 989

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 128/403 (31%), Positives = 209/403 (51%), Gaps = 27/403 (6%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G+ I +E +  Q    +  F  T+ Q+  I +IL D      M R+L GDVG GKT VA+
Sbjct: 457 GLNIAIENEELQAFQADAGFMYTEDQKRVIDEILVDFKSGKMMDRLLSGDVGFGKTEVAM 516

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A+ A V+ G QA+++AP  +L  QH++ +        I V  +      A ++  L+ +
Sbjct: 517 NAIFATVQKGFQALLIAPTTLLCAQHFKSLSHRFAKYNIKVAQLDRFTTAAQKQLILKEL 576

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G   + +GTH+LF   ++ +   LV+VDE+H+FGV+Q+ KL       H+L M+ATPI
Sbjct: 577 KSGALQVCVGTHSLF--DVELFNPALVVVDEEHKFGVKQKEKLKNFRENVHILSMSATPI 634

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWIC 489
           PR+L +        S++   P+ R+ ++T +   +   I E I R    +  G + +++ 
Sbjct: 635 PRSLNMALSSIKQYSQLLTPPSDREDVRTFVKEYDEKVIKEAILR---EMRRGGQIFFVH 691

Query: 490 PQIE--EKKESNFRSVVE--RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            +I   E K     S++   R  +LH   ++S+            E  M  F+     LL
Sbjct: 692 NRIATIEAKRKELLSMMPNLRILTLHSEISASVT-----------EKEMLRFEEKAYDLL 740

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKN 603
           ++T++IE GI + + + I+I+ A+HFG+A LHQLRGRVGR +    C  L      LS++
Sbjct: 741 LSTSIIESGIHIPNVNTIMIDAADHFGMADLHQLRGRVGRSKRQGFCYFLVKEKESLSES 800

Query: 604 SYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           +  RL  L++      G ++A  DL+ R  G ++G  QSG  K
Sbjct: 801 AKKRLIALESNSYLGSGSILAYHDLEIRGGGNLVGEAQSGHLK 843


>gi|254994680|ref|ZP_05276870.1| transcription repair coupling factor (mfd) [Anaplasma marginale
           str. Mississippi]
          Length = 1099

 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 207/388 (53%), Gaps = 28/388 (7%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQ 323
            +  P+  T+ Q  AI ++ +D++    M R++ GDVG GKT VAL A    +  +   Q
Sbjct: 552 CKEFPYVETEDQLKAISEVEEDLASGKVMDRLICGDVGFGKTEVALRAAFLVINEDPAKQ 611

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRKALERIAHGQAHIIIG 381
             ++ P  +L +QH    ++  QN  I V+ +  +    ++  +KALE   +G  +IIIG
Sbjct: 612 VAVIVPTTLLCRQHLAAFRERFQNYDINVQQLARSSATQKSKVKKALE---NGDINIIIG 668

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T AL  + I++  L L+I+DE+  FGVQQ+ +L +     HVL ++ATPIPRTL ++  G
Sbjct: 669 TSALLAEDIRFLDLSLLIIDEEQHFGVQQKEQLKKLRNDVHVLSLSATPIPRTLHMSLSG 728

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESN 499
             ++S +   P GR  +   II   + D  I +  ++  +S G + ++ CP I     S+
Sbjct: 729 IKNLSVLRTPPMGRMAVDIAII---QYDGNIIKTAILDEVSRGGRVFFTCPFI-----SD 780

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              V+     L  +    +A  HGR S    + +M+ F +G   +L+ T++IE GID+  
Sbjct: 781 IDGVLADLQKLVPNVKVEVA--HGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPF 838

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEE-------ISSCILLYHPPLSKNSYTRLSVLK 612
           A+ II+ NA+ FGLAQL+QL+GRVGR          +S   L   P + +    R   L 
Sbjct: 839 ANTIIVHNADMFGLAQLYQLKGRVGRSTLKGYAYFIVSKKALPDSPGMKRLEAVR--SLN 896

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           +   GF +A +D+  R  G ++G +QSG
Sbjct: 897 SVGSGFALALQDMDMRGFGNLVGEEQSG 924


>gi|116328533|ref|YP_798253.1| transcription-repair coupling factor [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331261|ref|YP_800979.1| transcription-repair coupling factor [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121277|gb|ABJ79320.1| Transcription-repair coupling factor [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124950|gb|ABJ76221.1| Transcription-repair coupling factor [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 1176

 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 119/374 (31%), Positives = 203/374 (54%), Gaps = 17/374 (4%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  AI+ + +D+     M R++ GDVG GKT VA+ A      AG Q +++AP  IL
Sbjct: 634 TPDQIEAIEAVKKDLESSVPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIMMLAPTTIL 693

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A QHY   K   +N  + VE+++     A  R+ L   + G+  +IIGTHA+    ++  
Sbjct: 694 ALQHYNTFKNRFRNYPLRVELVSRFKTSAEIREILSDFSLGKIDMIIGTHAILSSKLKPK 753

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV  +  + +      VL +TATPIPRTL +   G  ++S I   P 
Sbjct: 754 NLGLLIIDEEQRFGVNHKEAIKRFKNLVDVLTLTATPIPRTLHMALTGIRELSIIATPPK 813

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLH 511
            R+ ++T ++  +  D + E ++  +    + +++  ++E  E++      +V       
Sbjct: 814 NRQSVETYVLEEDE-DLIAEAIRNEIQRDGQVFYLYNRVETIEQETKYLGEIVPEV---- 868

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                SI I+HG+M++ + E  +  F N    +L+ TT+IE GID+ + + + ++ A+ F
Sbjct: 869 -----SIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLF 923

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLK 626
           GL+QL+Q+RGRVGR +  +   LL      +++ +  RL+ +   ++   GF +A  DL+
Sbjct: 924 GLSQLYQIRGRVGRSDRKAFAYLLLPKDRVVTEQAEKRLNTIYEYQELGSGFKVAMRDLE 983

Query: 627 QRKEGEILGIKQSG 640
            R  G +LG +QSG
Sbjct: 984 IRGAGNLLGKEQSG 997


>gi|255002792|ref|ZP_05277756.1| transcription repair coupling factor (mfd) [Anaplasma marginale
           str. Puerto Rico]
          Length = 1152

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 207/388 (53%), Gaps = 28/388 (7%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQ 323
            +  P+  T+ Q  AI ++ +D++    M R++ GDVG GKT VAL A    +  +   Q
Sbjct: 605 CKEFPYVETEDQLKAISEVEEDLASGKVMDRLICGDVGFGKTEVALRAAFLVINEDPAKQ 664

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRKALERIAHGQAHIIIG 381
             ++ P  +L +QH    ++  QN  I V+ +  +    ++  +KALE   +G  +IIIG
Sbjct: 665 VAVIVPTTLLCRQHLAAFRERFQNYDINVQQLARSSATQKSKVKKALE---NGDINIIIG 721

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T AL  + I++  L L+I+DE+  FGVQQ+ +L +     HVL ++ATPIPRTL ++  G
Sbjct: 722 TSALLAEDIRFLDLSLLIIDEEQHFGVQQKEQLKKLRNDVHVLSLSATPIPRTLHMSLSG 781

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESN 499
             ++S +   P GR  +   II   + D  I +  ++  +S G + ++ CP I     S+
Sbjct: 782 IKNLSVLRTPPMGRMAVDIAII---QYDGNIIKTAILDEVSRGGRVFFTCPFI-----SD 833

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              V+     L  +    +A  HGR S    + +M+ F +G   +L+ T++IE GID+  
Sbjct: 834 IDGVLADLQKLVPNVKVEVA--HGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPF 891

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEE-------ISSCILLYHPPLSKNSYTRLSVLK 612
           A+ II+ NA+ FGLAQL+QL+GRVGR          +S   L   P + +    R   L 
Sbjct: 892 ANTIIVHNADMFGLAQLYQLKGRVGRSTLKGYAYFIVSKKALPDSPGMKRLEAVR--SLN 949

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           +   GF +A +D+  R  G ++G +QSG
Sbjct: 950 SVGSGFALALQDMDMRGFGNLVGEEQSG 977


>gi|269959135|ref|YP_003328924.1| transcription repair coupling factor [Anaplasma centrale str.
           Israel]
 gi|269848966|gb|ACZ49610.1| transcription repair coupling factor [Anaplasma centrale str.
           Israel]
          Length = 1122

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 207/388 (53%), Gaps = 28/388 (7%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQ 323
            +  P+  T+ Q  AI ++ +D++    M R++ GDVG GKT VAL A    +  +   Q
Sbjct: 575 CKEFPYVETEDQLKAISEVEEDLASGKVMDRLICGDVGFGKTEVALRAAFLVINEDPAKQ 634

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRKALERIAHGQAHIIIG 381
             ++ P  +L +QH    ++  QN  I V+ +  +    ++  +KALE   +G  +IIIG
Sbjct: 635 VAVIVPTTLLCRQHLAAFRERFQNYDINVQQLARSSATQKSKVKKALE---NGDINIIIG 691

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T AL  + I++  L L+I+DE+  FGVQQ+ +L +     HVL ++ATPIPRTL ++  G
Sbjct: 692 TSALLAEDIRFLDLSLLIIDEEQHFGVQQKEQLKKLRNDVHVLSLSATPIPRTLHMSLSG 751

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESN 499
             ++S +   P GR  +   II   + D  I +  ++  +S G + ++ CP I     S+
Sbjct: 752 IKNLSVLRTPPMGRMAVDIAII---QYDGNIIKTAILDEVSRGGRVFFTCPFI-----SD 803

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              V+     L  +    +A  HGR S    + +M+ F +G   +L+ T++IE GID+  
Sbjct: 804 IDGVLADLQKLVPNVKVEVA--HGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPF 861

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEE-------ISSCILLYHPPLSKNSYTRLSVLK 612
           A+ II+ NA+ FGLAQL+QL+GRVGR          +S   L   P + +    R   L 
Sbjct: 862 ANTIIVHNADMFGLAQLYQLKGRVGRSTLKGYAYFIVSKKALPDSPGMKRLEAVR--SLN 919

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           +   GF +A +D+  R  G ++G +QSG
Sbjct: 920 SVGSGFALALQDMDMRGFGNLVGEEQSG 947


>gi|222474820|ref|YP_002563235.1| transcription repair coupling factor (mfd) [Anaplasma marginale
           str. Florida]
 gi|222418956|gb|ACM48979.1| transcription repair coupling factor (mfd) [Anaplasma marginale
           str. Florida]
          Length = 1152

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 207/388 (53%), Gaps = 28/388 (7%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQ 323
            +  P+  T+ Q  AI ++ +D++    M R++ GDVG GKT VAL A    +  +   Q
Sbjct: 605 CKEFPYVETEDQLKAISEVEEDLASGKVMDRLICGDVGFGKTEVALRAAFLVINEDPAKQ 664

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRKALERIAHGQAHIIIG 381
             ++ P  +L +QH    ++  QN  I V+ +  +    ++  +KALE   +G  +IIIG
Sbjct: 665 VAVIVPTTLLCRQHLAAFRERFQNYDINVQQLARSSATQKSKVKKALE---NGDINIIIG 721

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T AL  + I++  L L+I+DE+  FGVQQ+ +L +     HVL ++ATPIPRTL ++  G
Sbjct: 722 TSALLAEDIRFLDLSLLIIDEEQHFGVQQKEQLKKLRNDVHVLSLSATPIPRTLHMSLSG 781

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESN 499
             ++S +   P GR  +   II   + D  I +  ++  +S G + ++ CP I     S+
Sbjct: 782 IKNLSVLRTPPMGRMAVDIAII---QYDGNIIKTAILDEVSRGGRVFFTCPFI-----SD 833

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              V+     L  +    +A  HGR S    + +M+ F +G   +L+ T++IE GID+  
Sbjct: 834 IDGVLADLQKLVPNVKVEVA--HGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPF 891

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEE-------ISSCILLYHPPLSKNSYTRLSVLK 612
           A+ II+ NA+ FGLAQL+QL+GRVGR          +S   L   P + +    R   L 
Sbjct: 892 ANTIIVHNADMFGLAQLYQLKGRVGRSTLKGYAYFIVSKKALPDSPGMKRLEAVR--SLN 949

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           +   GF +A +D+  R  G ++G +QSG
Sbjct: 950 SVGSGFALALQDMDMRGFGNLVGEEQSG 977


>gi|294083797|ref|YP_003550554.1| transcription-repair coupling factor [Candidatus Puniceispirillum
            marinum IMCC1322]
 gi|292663369|gb|ADE38470.1| transcription-repair coupling factor [Candidatus Puniceispirillum
            marinum IMCC1322]
          Length = 1158

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 139/414 (33%), Positives = 223/414 (53%), Gaps = 21/414 (5%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q +AI+D++ D++      R++ GDVG GKT VAL A      AG Q  ++AP 
Sbjct: 610  FVETDDQLNAIQDVIDDLASGKASDRLICGDVGFGKTEVALRAAFIVAMAGYQVALVAPT 669

Query: 331  GILAQQH-YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH  EF +++     + + +++     +  ++  E +A G   ++IGTHAL   S
Sbjct: 670  TLLARQHGKEFTERFA-GFPLKLGVLSRMTSTSDAKQIREDLASGDVQVVIGTHALLAKS 728

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+IVDE+  FGV Q+ +L +     HVL ++ATPIPRTL +   G  ++S I 
Sbjct: 729  LSFNNLGLLIVDEEQHFGVGQKERLKEMRGDIHVLTLSATPIPRTLQMALSGVREMSLIA 788

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERF 507
              P  R  ++T + P    D V+ R  ++  +  G + + +CP+I+     + + V +R 
Sbjct: 789  TPPVDRLAVRTFVGP---WDGVVLREAILREMFRGGQIFVVCPRID-----DLQRVYDRV 840

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              L     + I   HGRM   + + VM  F +G   +L++T +IE GID+  A+ +II  
Sbjct: 841  RKLVPD--ARILSAHGRMPAAELDDVMTKFADGEADILLSTNIIESGIDIPSANTMIIHR 898

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
            A+ FGL+QL+QLRGRVGRG + +   L   P   L+  +  RL V++  +    GF +A 
Sbjct: 899  ADMFGLSQLYQLRGRVGRGRQRAYAYLTSDPNRILTPQARRRLEVMQTLDTLGAGFTLAS 958

Query: 623  EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
             D+  R  G +LG +QSG  + +    EL+  +L  A   AK    +D + T V
Sbjct: 959  YDMDIRGAGNLLGDEQSGHVREVGV--ELYQEMLRQAVDAAKAGDVKDDEDTVV 1010


>gi|291303253|ref|YP_003514531.1| transcription-repair coupling factor [Stackebrandtia nassauensis DSM
            44728]
 gi|290572473|gb|ADD45438.1| transcription-repair coupling factor [Stackebrandtia nassauensis DSM
            44728]
          Length = 1351

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 208/380 (54%), Gaps = 21/380 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q  AI ++  DM  +  M R++ GDVG GKT +A+ A   AV  G Q  ++ P
Sbjct: 796  PYQETPDQAGAIDEVKSDMMGRTPMDRLICGDVGYGKTEIAVRAAFKAVTDGKQVAVLVP 855

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA QH     +      + ++ ++     A   +  + +  G+  I++GTH L Q  
Sbjct: 856  TTLLASQHLNTFTERMSQFPVTIKQLSRFQTDAEAEQIRKGLIAGEVDIVVGTHRLLQTE 915

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
             ++  L LVIVDE+ RFGV+ + KL        VL M+ATPIPRTL +   G  ++S IT
Sbjct: 916  TRFKDLGLVIVDEEQRFGVEHKEKLKALRAHVDVLAMSATPIPRTLEMAITGIREMSTIT 975

Query: 450  EKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
              P  R P+ T +      ++   I R   +L +G + +++  ++E  EK  +  R +V 
Sbjct: 976  TPPEERHPVLTFVGGYEDKQVGAAIRR--ELLRDG-QVFYLHNRVESIEKAATRLREIVP 1032

Query: 506  RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                      + + + HG+M +   E +M  F NG   +L++TT+IE GID+ +A+ +I+
Sbjct: 1033 E---------ARVVVAHGKMGENRLEQIMQDFWNGEFDVLVSTTIIESGIDIPNANTLIV 1083

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRL-SVLKNTE--DGFLI 620
            E A+  GL+QLHQ+RGRVGRG E +    +Y P  PL++ ++ RL +V ++TE   G  +
Sbjct: 1084 ERADLLGLSQLHQIRGRVGRGRERAYAYFMYPPEKPLTEQAHERLATVAQHTELGAGMYV 1143

Query: 621  AEEDLKQRKEGEILGIKQSG 640
            A +DL+ R  G +LG +QSG
Sbjct: 1144 AMKDLEIRGAGNLLGGEQSG 1163


>gi|269794110|ref|YP_003313565.1| transcription-repair coupling factor Mfd [Sanguibacter keddieii DSM
            10542]
 gi|269096295|gb|ACZ20731.1| transcription-repair coupling factor Mfd [Sanguibacter keddieii DSM
            10542]
          Length = 1212

 Score =  183 bits (464), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 206/377 (54%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            ++ T  Q + I ++ QDM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 654  YTETPDQLATIDEVKQDMEKTIPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 713

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +L QQHY+   +      ++V+ ++        ++ ++ +  G   ++IGTH L   SI
Sbjct: 714  TLLVQQHYDTFAERYAGFPVVVKGLSRFQTDKEAKEIVDGLKEGTVDVVIGTHRLLSGSI 773

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LV+VDE+ RFGV+ +  L Q  T   VL M+ATPIPRTL +   G  ++S +  
Sbjct: 774  KFKDLGLVVVDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEMAVTGIREMSTLAT 833

Query: 451  KPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             P  R P+ T +   +  +I   I R   +L EG+  Y     +  K +S  R+   R  
Sbjct: 834  PPEERHPVLTYVGAYDDKQITAAIRR--ELLREGQLFY-----VHNKVDSIDRTAA-RLK 885

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
             L     + I + HG+M +   E V+  F      +L+ TT+IE G+D+ +A+ +I+E A
Sbjct: 886  ELVPE--ARIEVAHGKMGEHQLERVIMDFWEKKFDVLVCTTIIETGLDISNANTLILERA 943

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEE 623
            +  GL+QLHQLRGRVGRG + +    LY P  PL++ ++ RL+ +    D   G  +A +
Sbjct: 944  DMLGLSQLHQLRGRVGRGRDRAYAYFLYPPERPLTETAHDRLATIAANTDLGSGMAVAMK 1003

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 1004 DLEIRGAGNLLGGEQSG 1020


>gi|56416451|ref|YP_153525.1| transcription repair coupling factor [Anaplasma marginale str. St.
           Maries]
 gi|56387683|gb|AAV86270.1| transcription repair coupling factor [Anaplasma marginale str. St.
           Maries]
          Length = 1152

 Score =  183 bits (464), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 207/388 (53%), Gaps = 28/388 (7%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQ 323
            +  P+  T+ Q  AI ++ +D++    M R++ GDVG GKT VAL A    +  +   Q
Sbjct: 605 CKEFPYVETEDQLKAISEVEEDLASGKVMDRLICGDVGFGKTEVALRAAFLVINEDPAKQ 664

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRKALERIAHGQAHIIIG 381
             ++ P  +L +QH    ++  QN  I V+ +  +    ++  +KALE   +G  +IIIG
Sbjct: 665 VAVIVPTTLLCRQHLAAFRERFQNYDINVQQLARSSATQKSKVKKALE---NGDINIIIG 721

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T AL  + I++  L L+I+DE+  FGVQQ+ +L +     HVL ++ATPIPRTL ++  G
Sbjct: 722 TSALLAEDIRFLDLSLLIIDEEQHFGVQQKEQLKKLRNDVHVLSLSATPIPRTLHMSLSG 781

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESN 499
             ++S +   P GR  +   II   + D  I +  ++  +S G + ++ CP I     S+
Sbjct: 782 IKNLSVLRTPPMGRMAVDIAII---QYDGNIIKTAILDEVSRGGRVFFTCPFI-----SD 833

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              V+     L  +    +A  HGR S    + +M+ F +G   +L+ T++IE GID+  
Sbjct: 834 IDGVLADLQKLVPNVKVEVA--HGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPF 891

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEE-------ISSCILLYHPPLSKNSYTRLSVLK 612
           A+ II+ NA+ FGLAQL+QL+GRVGR          +S   L   P + +    R   L 
Sbjct: 892 ANTIIVHNADMFGLAQLYQLKGRVGRSTLKGYAYFIVSKKALPDSPGMKRLEAVR--SLN 949

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           +   GF +A +D+  R  G ++G +QSG
Sbjct: 950 SVGSGFALALQDMDMRGFGNLVGEEQSG 977


>gi|224437109|ref|ZP_03658090.1| ATP-dependent DNA helicase RecG [Helicobacter cinaedi CCUG 18818]
 gi|313143579|ref|ZP_07805772.1| ATP-dependent DNA recombinase RecG [Helicobacter cinaedi CCUG
           18818]
 gi|313128610|gb|EFR46227.1| ATP-dependent DNA recombinase RecG [Helicobacter cinaedi CCUG
           18818]
          Length = 653

 Score =  183 bits (464), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 142/418 (33%), Positives = 203/418 (48%), Gaps = 64/418 (15%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+++PF+ T+ Q++AIKDI  D+       R++ GDVG GK++V   A+  A      +V
Sbjct: 229 LQSLPFTLTQGQQNAIKDIRHDLQSPIASRRLIMGDVGCGKSVVIFSAVMCAYPHA--SV 286

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA Q YE  K+      + + +IT   P   +           +H IIGT AL
Sbjct: 287 LMAPTTILATQLYEEAKRLLPPF-VKIHLITSKTPNLSQEAK-------DSHFIIGTQAL 338

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQR---------------------------------- 411
                +   L LV+ DEQHRFG ++R                                  
Sbjct: 339 LYRDFRLENLALVMSDEQHRFGTKERHILEKIGQENLDSTPNLFDFSLQNALTDSMADTN 398

Query: 412 -------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
                  L+ T K T PH L  +ATPIPRTL + +   I++S I + P  +K I T II 
Sbjct: 399 KRDSKTPLESTNK-TRPHTLQFSATPIPRTLAMINSQFINLSVIKDLPF-KKDITTRIID 456

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
            +    ++  LK  +++G +A  + P +EE +  ++ S+ E       HF   +    G+
Sbjct: 457 KSGFKALLAHLKDEIAKGNQAIIVYPLVEESQTLDYLSLTEGQGFWQRHF-EGVYCTSGK 515

Query: 525 MSDIDKESVMDSFK-NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
             D +K+ V+D F   G+  LL+ATT+IEVGI +   S I+I   E  GLA LHQLRGRV
Sbjct: 516 --DKNKQDVIDEFALKGS--LLLATTLIEVGISLPKVSTIVIVAPERLGLATLHQLRGRV 571

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSG 640
            R      C L  H    K+   RL     T  GF IAE DL+ R  G++L G +QSG
Sbjct: 572 SRNGLKGYCYLYTH----KSDNPRLQAFAQTLSGFDIAELDLQYRSSGDLLSGTRQSG 625


>gi|255003926|ref|ZP_05278727.1| transcription repair coupling factor (mfd) [Anaplasma marginale
           str. Virginia]
          Length = 1148

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 207/388 (53%), Gaps = 28/388 (7%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQ 323
            +  P+  T+ Q  AI ++ +D++    M R++ GDVG GKT VAL A    +  +   Q
Sbjct: 601 CKEFPYVETEDQLKAISEVEEDLASGKVMDRLICGDVGFGKTEVALRAAFLVINEDPAKQ 660

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEII--TGNMPQAHRRKALERIAHGQAHIIIG 381
             ++ P  +L +QH    ++  QN  I V+ +  +    ++  +KALE   +G  +IIIG
Sbjct: 661 VAVIVPTTLLCRQHLAAFRERFQNYDINVQQLARSSATQKSKVKKALE---NGDINIIIG 717

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T AL  + I++  L L+I+DE+  FGVQQ+ +L +     HVL ++ATPIPRTL ++  G
Sbjct: 718 TSALLAEDIRFLDLSLLIIDEEQHFGVQQKEQLKKLRNDVHVLSLSATPIPRTLHMSLSG 777

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESN 499
             ++S +   P GR  +   II   + D  I +  ++  +S G + ++ CP I     S+
Sbjct: 778 IKNLSVLRTPPMGRMAVDIAII---QYDGNIIKTAILDEVSRGGRVFFTCPFI-----SD 829

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              V+     L  +    +A  HGR S    + +M+ F +G   +L+ T++IE GID+  
Sbjct: 830 IDGVLADLQKLVPNVKVEVA--HGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPF 887

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEE-------ISSCILLYHPPLSKNSYTRLSVLK 612
           A+ II+ NA+ FGLAQL+QL+GRVGR          +S   L   P + +    R   L 
Sbjct: 888 ANTIIVHNADMFGLAQLYQLKGRVGRSTLKGYAYFIVSKKALPDSPGMKRLEAVR--SLN 945

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           +   GF +A +D+  R  G ++G +QSG
Sbjct: 946 SVGSGFALALQDMDMRGFGNLVGEEQSG 973


>gi|171910874|ref|ZP_02926344.1| transcription-repair coupling factor [Verrucomicrobium spinosum DSM
           4136]
          Length = 1117

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 138/441 (31%), Positives = 228/441 (51%), Gaps = 33/441 (7%)

Query: 214 KAKDFEWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
           K  D  W  + A+   + +E  AG +++   R+  K     P   + K   +  ++  + 
Sbjct: 502 KLGDARWVKTRAQAEKSVEEFAAGMLSIAAQRQTLKGHAHPP---DTKWQVEFEQSFLYR 558

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q  +I +I +DM Q+  M R+L GDVG GKT VA+ A   AV  G Q  ++ P  +
Sbjct: 559 ETPDQLKSIAEIKRDMEQEKPMDRLLCGDVGFGKTEVAIRAAFKAVMGGKQVAVLVPTTV 618

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LAQQH    K+   +  + VE+++   P    ++ L+ +  G   I++GTH +    +Q+
Sbjct: 619 LAQQHLATFKERMSDYPVTVEMLSRLTPAKREKEILKGVKDGTVDIVVGTHRVISKDVQF 678

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            +L L ++DE+ RFGV+ + +  Q      VL ++ATPIPRTL L  +G  D+S +   P
Sbjct: 679 KQLGLAVIDEEQRFGVKHKERFKQLFRLVDVLTLSATPIPRTLYLGLVGMRDMSTLDTPP 738

Query: 453 AGRKPIKTVIIPINR------IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
             R  ++T +   +       I++ IER       G + +++  ++ +         +E+
Sbjct: 739 PNRHAVQTSVCGYDERIIRDAINKEIER-------GGQVFFLHNRVMD---------MEK 782

Query: 507 FNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             +  E  +  + + I HG+M +   E VM  F  G   +L+ TT+IE G+D+ +A+ II
Sbjct: 783 MKAKLEALSPKARVVIGHGQMDETLLEDVMRRFIAGEADVLLCTTIIESGVDIPNANTII 842

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK--NSYTRLSVLKNTE---DGFL 619
           I+ A+ FGLA L+QLRGRVGRG E +   L+    L    ++  R++ +K       GF 
Sbjct: 843 IDRADRFGLADLYQLRGRVGRGGERAHAYLMLPRDLMTVGDARKRVTAIKQYTALGSGFK 902

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           IA  DL+ R  G +LG +QSG
Sbjct: 903 IAMRDLEIRGAGNLLGTEQSG 923


>gi|256374814|ref|YP_003098474.1| transcription-repair coupling factor [Actinosynnema mirum DSM
           43827]
 gi|255919117|gb|ACU34628.1| transcription-repair coupling factor [Actinosynnema mirum DSM
           43827]
          Length = 1187

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 203/378 (53%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF+ T  Q +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q V++ P
Sbjct: 622 PFTETVDQMAAIDEVKADMERGVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVVVLVP 681

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQH     +  +   ++V  ++         +    +A G   ++IGTH L Q  
Sbjct: 682 TTLLAQQHLNTFTERMRAFPVVVRGLSRFTDPTEAEQTTTGLAEGDVDVVIGTHRLLQKG 741

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++Y  L LVIVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I 
Sbjct: 742 LRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTIL 801

Query: 450 EKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R PI T +      ++   I R   +L +G+  Y         + S+      R 
Sbjct: 802 TPPEERHPILTYVGGYADKQVGAAIRR--ELLRDGQVFYV------HNRVSSIEKAARRI 853

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L     + +   HG+M++   E ++  F      +L++TT++E G+D+ +A+ +I+E 
Sbjct: 854 RELAPE--ARVVTAHGQMNEDKLEKIIQGFWEREYDVLVSTTIVETGLDISNANTLIVER 911

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAE 622
            +  GL+QLHQLRGRVGRG E      LY P  PLS+ ++ RL+ + +NTE   G  +A 
Sbjct: 912 GDLLGLSQLHQLRGRVGRGRERGYAYFLYPPESPLSETAHDRLATIAQNTELGAGMAVAM 971

Query: 623 EDLKQRKEGEILGIKQSG 640
           +DL+ R  G ILG +QSG
Sbjct: 972 KDLEIRGAGNILGAEQSG 989


>gi|317133014|ref|YP_004092328.1| transcription-repair coupling factor [Ethanoligenens harbinense
           YUAN-3]
 gi|315470993|gb|ADU27597.1| transcription-repair coupling factor [Ethanoligenens harbinense
           YUAN-3]
          Length = 1179

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 138/430 (32%), Positives = 220/430 (51%), Gaps = 21/430 (4%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW  +  R R A  ++    IAL   R+Q K   GI    +  + ++      F  T  Q
Sbjct: 564 EWQKAKNRVRAAVKDMAKELIALYAARQQVK---GITFQPDDAMQREFEDRFEFEETDDQ 620

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              +++I  DM +   M R+L GDVG GKT VAL A    +E G Q  I+ P  ILA QH
Sbjct: 621 LRCVEEIKGDMQRAFPMDRLLCGDVGFGKTEVALRAAFKCMENGKQCAILVPTTILAWQH 680

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           ++ I +  +   + + +++       +++ L  +A G   I++GTH L Q  +++  L L
Sbjct: 681 FQTITRRMEGFPVKIGLLSRFRTPHEQQQTLRDLARGSVDIVVGTHRLVQKDVRFKSLGL 740

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV Q+ KL +      VL ++ATPIPRTL +   G  D+S I E P  R P
Sbjct: 741 LIVDEEQRFGVAQKEKLKELFKNVDVLTLSATPIPRTLNMAMSGIRDMSVIEEAPQDRHP 800

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           ++T ++  +    + + ++  L  G + Y++  ++E  E   +   ++V           
Sbjct: 801 VQTYVLE-HDWGVLADAVRRELRRGGQVYYLHNRVESIEGTAAKLHALVP---------D 850

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + + I HG+M +     V +        +L+ TT+IE G+DV + + +IIE+A+H GL+Q
Sbjct: 851 ARVGIAHGKMDEETLSRVWEKLLGNELDVLVCTTIIETGVDVPNCNTLIIEDADHMGLSQ 910

Query: 576 LHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQ+RGRVGR    +     +     LS  +  RL  ++   +   GF IA  DL+ R  
Sbjct: 911 LHQIRGRVGRSSRRAFAYFTFRRGKALSDIATKRLEAIREYTEFGAGFQIALRDLEIRGA 970

Query: 631 GEILGIKQSG 640
           G ILG +Q G
Sbjct: 971 GNILGSQQHG 980


>gi|269219241|ref|ZP_06163095.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 848
            str. F0332]
 gi|269211388|gb|EEZ77728.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 848
            str. F0332]
          Length = 1194

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 135/458 (29%), Positives = 234/458 (51%), Gaps = 19/458 (4%)

Query: 188  WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            W+  D L + S  +  EA ++     K    +W        A  + +A ++  L   +Q 
Sbjct: 560  WVPTDSLDQVSRYAGGEAPSL----NKMGGSDWAKTKAGARAATKQIAQELVRLYAARQA 615

Query: 248  KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             K  G   + +    +++  +  +  T  Q   I ++  DM +   M R++ GDVG GKT
Sbjct: 616  AK--GFQFSPDTPWQRELEDSFAYVETPDQLQTIDEVKADMEKPTPMDRLISGDVGYGKT 673

Query: 308  LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             +AL A   AV+ G QA ++ P  +L  QHYE  ++      + +  ++    +    + 
Sbjct: 674  EIALRAAFKAVQDGKQAAVLVPTTLLVSQHYETFRERYSGFPVRLAQLSRFQSEREAAET 733

Query: 368  LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            +  +A G   ++IGTH L   ++++  L LV+VDE+ RFGV+ +  L Q      VL M+
Sbjct: 734  VRGLADGTVDVVIGTHRLLTGNVRFKNLGLVVVDEEQRFGVEHKETLKQLYPDVDVLSMS 793

Query: 428  ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            ATPIPRTL +   G  ++S +   P  R P+ T + P +   +V+  ++  L    + ++
Sbjct: 794  ATPIPRTLEMAVTGVREMSTLATPPEERHPVLTYVGPKDN-KQVLAAIRRELLRDGQIFY 852

Query: 488  ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +       +  +   V  +   L     + + + HG+MS+   E V+ +F +    +L+ 
Sbjct: 853  V-----HNRTGDMARVAAQIGELVPE--ARVGVAHGKMSEHQLELVIQAFWDKEIDILVC 905

Query: 548  TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSY 605
            TT++E G+D+ +A+ +I+E+AE FGL+QLHQLRGRVGRG E +    LY+P   +++ + 
Sbjct: 906  TTIVETGLDISNANTLIVEDAERFGLSQLHQLRGRVGRGRERAYAYFLYNPDKAMTETAL 965

Query: 606  TRL-SVLKNTE--DGFLIAEEDLKQRKEGEILGIKQSG 640
             RL ++  N E   G  +A  DL+ R  G +LG +QSG
Sbjct: 966  ERLRTIAANAELGSGIQVAMRDLEIRGAGNMLGGEQSG 1003


>gi|296128756|ref|YP_003636006.1| transcription-repair coupling factor [Cellulomonas flavigena DSM
            20109]
 gi|296020571|gb|ADG73807.1| transcription-repair coupling factor [Cellulomonas flavigena DSM
            20109]
          Length = 1214

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 131/374 (35%), Positives = 202/374 (54%), Gaps = 17/374 (4%)

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q + I+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L
Sbjct: 659  TPDQLATIEEVKADMEKTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL 718

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             QQH +   +      + V  ++        ++ +E +A G   ++IGTH L   S+++ 
Sbjct: 719  VQQHLDTFTERYAPYPVKVAALSRFQTAKESQQVVEGLADGSVDVVIGTHRLITGSVRFK 778

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L LVI+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S +   P 
Sbjct: 779  DLGLVIIDEEQRFGVEHKETLKALRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPE 838

Query: 454  GRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
             R P+ T + P    +I   I R   +L EG+  Y     +  K ES  R+   R N L 
Sbjct: 839  ERHPVLTFVGPYEEKQISAAIRR--ELLREGQVFY-----VHNKVESIERTA-SRLNELV 890

Query: 512  EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                + IA+ HG+M +   E V+  F      +L+ TT++E G+D+ +A+ +I+E A+  
Sbjct: 891  PE--ARIAVAHGKMGEHQLEQVIVDFWEKRFDVLVCTTIVETGLDISNANTLILERADRL 948

Query: 572  GLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GL+QLHQLRGRVGRG E +    LY P  PL++ ++ RL  +    D   G  +A +DL+
Sbjct: 949  GLSQLHQLRGRVGRGRERAYAYFLYPPEVPLTETAHDRLQTIAAHTDLGAGMAVAMKDLE 1008

Query: 627  QRKEGEILGIKQSG 640
             R  G +LG +QSG
Sbjct: 1009 IRGAGNLLGGEQSG 1022


>gi|324997533|ref|ZP_08118645.1| transcription-repair coupling factor [Pseudonocardia sp. P1]
          Length = 1211

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/430 (29%), Positives = 230/430 (53%), Gaps = 21/430 (4%)

Query: 219  EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W  +  R R A  ++ AG + L   R+      G     +    +++    P++ T  Q
Sbjct: 596  DWAKTKGRARKAVKDIAAGLVQLYAARQASP---GHAFGADTPWQRELEDAFPYTETPDQ 652

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             SAI ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH
Sbjct: 653  LSAIDEVKKDMERPVPMDRVISGDVGFGKTEIAVRAAFKAVQDGKQVAVLVPTTLLATQH 712

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
                 +  +   + V  ++     A  ++ ++++A G   +++GTH L Q ++++  L L
Sbjct: 713  LNTFAERMRQFPVTVRGLSRFTDAAEAKETIDKLAEGTVDVVVGTHRLLQGAVRWKDLGL 772

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            V+VDE+ RFGV+ +  +T       VL ++ATPIPRTL ++  G  ++S IT  P  R P
Sbjct: 773  VVVDEEQRFGVEHKEHITALRAHVDVLTLSATPIPRTLEMSLAGIREMSAITTPPEDRHP 832

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
              T +   +         + +L +G + +++  ++   +K   N + +V           
Sbjct: 833  TLTYVGAYDDKQVAAAVRRELLRDG-QVFYVHNRVSSIDKAAKNIQDLVPE--------- 882

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + +A+ HG+M++   E  +++F +    +L+ TT++E G+D+ +A+ +I+E ++  GL+Q
Sbjct: 883  ARVAVAHGQMNEELLERTVNAFWHREFDVLVCTTIVENGLDISNANTLIVERSDTLGLSQ 942

Query: 576  LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
            LHQLRGRVGRG E      L+ P  PL++ ++ RL+ +    +   G  +A +DL+ R  
Sbjct: 943  LHQLRGRVGRGRERGYAYFLFPPEHPLTETAHDRLATIAQHSELGSGAAVAMKDLEIRGA 1002

Query: 631  GEILGIKQSG 640
            G ILG +QSG
Sbjct: 1003 GNILGAEQSG 1012


>gi|291456465|ref|ZP_06595855.1| transcription-repair coupling factor [Bifidobacterium breve DSM
            20213]
 gi|291381742|gb|EFE89260.1| transcription-repair coupling factor [Bifidobacterium breve DSM
            20213]
          Length = 1196

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/428 (30%), Positives = 227/428 (53%), Gaps = 17/428 (3%)

Query: 219  EWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W +  A+ R    E+    I L   R++ K   G   + +    +++    P+  T  Q
Sbjct: 596  DWAATKAKARKHVHEIADDLIKLYSARQRAK---GFAFSPDTPWQKELEDAFPYQETADQ 652

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH
Sbjct: 653  LTTIDEVKSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH 712

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
             E      +   + V  ++           +E + +G   ++IGTH L    I++  L L
Sbjct: 713  QETFTDRFEGFPVNVAAMSRFQTTKEINATIEGLENGMVDVVIGTHKLLNPKIKFKDLGL 772

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 773  VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 832

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T +       +V   ++  L  G + +++  +++     +  S+ ++ ++L     + 
Sbjct: 833  VLTYVGAYEDA-QVTAAVRRELLRGGQVFYVHNRVQ-----DISSIADKIHTLVPE--AR 884

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH
Sbjct: 885  VGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 944

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    GF +A +DL+ R  G 
Sbjct: 945  QLRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGN 1004

Query: 633  ILGIKQSG 640
            +LG +QSG
Sbjct: 1005 LLGDEQSG 1012


>gi|320532549|ref|ZP_08033357.1| putative transcription-repair coupling factor [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135236|gb|EFW27376.1| putative transcription-repair coupling factor [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 598

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 201/378 (53%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q S I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 136 PYTETPDQLSTIDEVKADMEKAQPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 195

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +L  QH E   +      + V  ++     A   K LE +  G   +++GTH L    
Sbjct: 196 TTLLVSQHAETFTERYAGFPVTVGALSRFQDAAESAKVLEGLEKGTVDVVVGTHRLITGQ 255

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L LVI+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S + 
Sbjct: 256 VRFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSMSATPIPRTLEMAVTGLREMSTLA 315

Query: 450 EKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R PI T +      ++   I R   +L EG + +++  ++E     +  +   R 
Sbjct: 316 TPPEDRHPILTYVGAYETKQVSAAIRR--ELLREG-QVFFVHNRVE-----DIDATAARL 367

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L     + +A  HG+M++   E+V+DSF      +L+ TT++E G+DV +A+ +I++ 
Sbjct: 368 AELVPE--ARVATAHGQMNEHQLEAVIDSFWRKETDVLVCTTIVETGLDVSNANTLIVDR 425

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
           A+  GL+QLHQLRGRVGRG E +    LY    PL++ +  RL  +    D   G  +A 
Sbjct: 426 ADRMGLSQLHQLRGRVGRGRERAYAYFLYPSDKPLTETALERLRTIATNTDLGAGMQVAM 485

Query: 623 EDLKQRKEGEILGIKQSG 640
           +DL+ R  G +LG +QSG
Sbjct: 486 KDLEIRGSGNLLGGEQSG 503


>gi|291541698|emb|CBL14808.1| transcription-repair coupling factor [Ruminococcus bromii L2-63]
          Length = 1152

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/408 (31%), Positives = 214/408 (52%), Gaps = 17/408 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +  Q  K  G   + + +  +    +  +  T  Q    ++I  DM + + M R+L 
Sbjct: 585 LIELYSQRMKAKGYAFSADNEWQRDFELSFEYDETPDQLRCCEEIKHDMMRSSPMDRLLC 644

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VAL A    +    Q  ++ P  ILA QHY+ + K  +   + VE+++   
Sbjct: 645 GDVGFGKTEVALRAAFKCIADSKQCALLCPTTILAWQHYQTVIKRFEGYPVRVELLSRFR 704

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ L+++  G+  +I+GTH L Q  +++  L L I+DE+ RFGV Q+ +  +   
Sbjct: 705 TAKQQKEILQKLKRGEIDMIVGTHRLVQKDVEFRDLGLAIIDEEQRFGVAQKERFKELCK 764

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
              VL ++ATPIPRTL +   G  D+S I E P  R+P++T ++  +  D VI E ++  
Sbjct: 765 NVDVLTLSATPIPRTLNMAMSGLRDMSVIEEAPTNRQPVQTYVLEHD--DAVINEAIRRE 822

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSF 537
           L  G + +++         +N  ++      + E    + IAI HG+M + +   V    
Sbjct: 823 LRRGGQVFYL--------HNNVETISSCAAKIQEAVPEAKIAIGHGKMKEGELSEVWRQM 874

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY- 596
                 +L+ TT+IE G+D+ +A+ +IIENA+  GL+QLHQLRGRVGR    +     + 
Sbjct: 875 LEQEIDVLVCTTIIETGVDLPNANTLIIENADCMGLSQLHQLRGRVGRSSRRAYAYFTFR 934

Query: 597 -HPPLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
            +  L++    RL+ ++  TE   GF IA  DL+ R  G I+G +Q G
Sbjct: 935 RNKVLTEIQQKRLAAIREFTEFGSGFRIAMRDLELRGAGNIMGAQQHG 982


>gi|254458684|ref|ZP_05072108.1| ATP-dependent DNA helicase [Campylobacterales bacterium GD 1]
 gi|207084450|gb|EDZ61738.1| ATP-dependent DNA helicase [Campylobacterales bacterium GD 1]
          Length = 599

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 141/423 (33%), Positives = 217/423 (51%), Gaps = 40/423 (9%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           + L Y EL      L   R+ F+  + +  + E   +     ++PF  T  Q  AI DI 
Sbjct: 182 DALKYLELFTYMKQLSAKRRYFEPIVKVDADYETWNS-----SLPFKLTNEQTDAIDDIK 236

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D  +     R++ GDVGSGKT+V  I  +A++    ++++MAP  ILA Q +E  +K+ 
Sbjct: 237 NDFKKDVASRRMIVGDVGSGKTMV--ILASASMMLPRRSILMAPTTILANQLFEEAQKFL 294

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI---LVIVDE 402
            + + +  ++T            ++I   +   IIGTHAL      Y +L    LV+VDE
Sbjct: 295 PDAKSV--LVTNKT---------KKIDLQEFDFIIGTHALL-----YRELPDAGLVMVDE 338

Query: 403 QHRFGVQQRLKL----TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           QHRFG  QR  L    +  A  PH L  +ATPIPRT  +     ID+S IT  P   K I
Sbjct: 339 QHRFGTAQRNMLEKLVSSGAKKPHFLQFSATPIPRTQAMIETAHIDVSLITSTPF-TKDI 397

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            + +I  N   +++E ++  +++  +   + P +E+ +  +++S+ E      + F  ++
Sbjct: 398 TSKVIHKNDFKDLLEHIEEEIAKNNQVLLVYPLVEQSEVLDYQSIDEARGYWEKSF-DNV 456

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+  D  KE V+  F+     LLIATTV+EVGI +   + ++I  AE  GL+ LHQ
Sbjct: 457 YVTHGK--DKQKEEVLLDFRE-KGSLLIATTVVEVGISLPRLTTVVIVGAERLGLSTLHQ 513

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIK 637
           LRGRV R      C L  +    +++  RL    +T  GF IA  DLK RK G++L G  
Sbjct: 514 LRGRVSRTGLKGYCYLYTN----QSTTDRLDRFVDTTSGFDIANLDLKFRKSGDLLKGAS 569

Query: 638 QSG 640
           QSG
Sbjct: 570 QSG 572


>gi|331694753|ref|YP_004330992.1| transcription-repair coupling factor [Pseudonocardia dioxanivorans
           CB1190]
 gi|326949442|gb|AEA23139.1| transcription-repair coupling factor [Pseudonocardia dioxanivorans
           CB1190]
          Length = 1194

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 136/432 (31%), Positives = 225/432 (52%), Gaps = 25/432 (5%)

Query: 219 EWT-SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +W+ + +R R A  ++ AG + L   R+      G     +    +++    PF+ T  Q
Sbjct: 583 DWSKTKSRARKAVRDIAAGLVQLYAARQASP---GHAFASDSPWQRELEDAFPFTETPDQ 639

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH
Sbjct: 640 LAAIDEVKADMERPVPMDRVISGDVGFGKTEIAVRAAFKAVQDGKQVAVLVPTTLLATQH 699

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
                   +   + V+ ++     A  R  +E +A G   +++GTH L Q  +++  L L
Sbjct: 700 LATFSDRMRAFPVTVKGLSRFTDAAEARATIEGLADGTVDVVVGTHRLLQTGVRWKDLGL 759

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VIVDE+ RFGV+ +  +T       VL ++ATPIPRTL ++  G  ++S IT  P  R P
Sbjct: 760 VIVDEEQRFGVEHKEHITALRAHVDVLTLSATPIPRTLEMSLAGIREMSTITTPPEARHP 819

Query: 458 IKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             T +   +  ++   I R   +L +G+  Y            N  S ++R     +   
Sbjct: 820 TLTYVGAYDPKQVGAAIRR--ELLRDGQVFYV----------HNRVSTIDRAARTVQELV 867

Query: 516 --SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             + IA+ HG+M++   E  ++ F +    +L+ TT++E G+D+ +A+ +I+E ++  GL
Sbjct: 868 PEARIAVAHGQMNEDVLERTVNGFWHREFDVLVCTTIVENGLDISNANTLIVERSDTLGL 927

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL---KNTEDGFLIAEEDLKQR 628
           +QLHQLRGRVGRG E      LY P  PL++ ++ RL+ +        G  +A +DL+ R
Sbjct: 928 SQLHQLRGRVGRGRERGYAYFLYPPDTPLTETAHDRLATIAQHSGLGSGAAVAMKDLEIR 987

Query: 629 KEGEILGIKQSG 640
             G ILG +QSG
Sbjct: 988 GAGNILGAEQSG 999


>gi|157165294|ref|YP_001467043.1| transcription-repair coupling factor [Campylobacter concisus 13826]
 gi|112800411|gb|EAT97755.1| transcription-repair coupling factor [Campylobacter concisus 13826]
          Length = 981

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 128/403 (31%), Positives = 211/403 (52%), Gaps = 36/403 (8%)

Query: 257 VEGKIAQK-------ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           + GKI QK        +++  FS T  Q+ A+ DI  ++     M R+L GDVG GKT V
Sbjct: 446 IAGKILQKEDISYLNFVQDAGFSYTSDQQKAVNDIKDELKSGKVMDRLLSGDVGFGKTEV 505

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV---EIITGNMPQAHRRK 366
           A+ A+   +++G  A    P  +L+ QHY+ + +      I V   +  +    +++ +K
Sbjct: 506 AMNAIFTCIKSGFSAFFFVPTTLLSSQHYKTLSQRFSKFGIKVFRLDRFSSAKEKSNLQK 565

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
           AL+     +  + +GTHAL   S++   L L++VDE+H+FGV+Q+ +L + +   H+L M
Sbjct: 566 ALK---ENEPIVCVGTHALL--SVKAENLGLIVVDEEHKFGVKQKEQLKEISQHSHILSM 620

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKK 484
           +ATPIPR+L +        S +   P+ R  ++T +   +   I E I R    L  G +
Sbjct: 621 SATPIPRSLNMALSKIKTYSILATPPSSRLDVRTSVREWDEKVIKEAIMR---ELRRGGQ 677

Query: 485 AYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            ++I   I   E+  +  R ++ +           I I+H +++    E  M  F+ G  
Sbjct: 678 TFYIHNHIADIEQTANELRKILPKLR---------ILILHSKINAKVAEDEMMKFERGEY 728

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPL 600
            LL+ T+++E GI + +A+ II+ENA  FG+A LHQLRGRVGR ++ + C  L      +
Sbjct: 729 DLLLCTSIVESGIHLPNANTIIVENANKFGMADLHQLRGRVGRSDKQAYCYFLVEDKDAI 788

Query: 601 SKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           SK++  RL  L+       G ++A  DL+ R  G I+G  QSG
Sbjct: 789 SKDALKRLVALEGNSFLGAGSVLAYHDLEIRGGGNIIGEAQSG 831


>gi|225351843|ref|ZP_03742866.1| hypothetical protein BIFPSEUDO_03444 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157090|gb|EEG70429.1| hypothetical protein BIFPSEUDO_03444 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 1182

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 209/384 (54%), Gaps = 14/384 (3%)

Query: 263 QKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           QK L +  P+  T  Q + I ++  DM +   M R++ GDVG GKT +A+ A   AV+  
Sbjct: 622 QKELEDAFPYQETADQLTTIDEVKSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAVQDS 681

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++ P  +L QQH+E   +  +   + V  ++           +E +  G   ++IG
Sbjct: 682 KQVAVLVPTTLLVQQHFETFTERFEGFPVEVRAMSRFQTTKEINDTIEGLEDGSVDVVIG 741

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH L    +++  L LVI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G
Sbjct: 742 THKLLGPKVKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTG 801

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             ++S +   P  R P+ T +       +V   ++  L  G + +++  +++     +  
Sbjct: 802 IREMSTLATPPEDRLPVLTYVGAYEDA-QVTAAVRRELLRGGQVFYVHNRVQ-----DIA 855

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           SV  + + L     S + I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A+
Sbjct: 856 SVAAKIHELVPE--SHVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNAN 913

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--D 616
            +I+++A+ FGL+QLHQLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    
Sbjct: 914 TLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPTKPMTQQSHDRLATIAQNTALGS 973

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF +A +DL+ R  G +LG +QSG
Sbjct: 974 GFDVAMKDLELRGTGNLLGDEQSG 997


>gi|50955304|ref|YP_062592.1| transcription-repair coupling factor [Leifsonia xyli subsp. xyli str.
            CTCB07]
 gi|50951786|gb|AAT89487.1| transcription-repair coupling factor [Leifsonia xyli subsp. xyli str.
            CTCB07]
          Length = 1204

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 207/378 (54%), Gaps = 17/378 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF+ T  Q   I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 648  PFAETPDQLQTIDEVKADMERPIPMDRLISGDVGFGKTEIAIRAAFKAVQDGKQVAVLVP 707

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L +QH E   +      + +  ++        R+ L  +A G   I+IGTH +  D 
Sbjct: 708  TTLLVKQHAETFMERFAGFPVHLRQLSRFQTDREARETLRGLAGGTVDIVIGTHRILSDG 767

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L LV++DE+ RFGV+ + +L +  T   +L M+ATPIPRTL +   G  ++S + 
Sbjct: 768  VTFKDLGLVVIDEEQRFGVEHKDRLKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLA 827

Query: 450  EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
              P  R PI T + P +  ++   I R   +L EG + +++  ++      +  SV  + 
Sbjct: 828  TPPEDRHPILTFVGPYSERQVGAAIRR--ELLREG-QVFFVHNRV-----GSITSVAAKL 879

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              L     + IA  HG+M++   E V+  F      +L++TT+IE G+D+ +A+ III+ 
Sbjct: 880  AELVPE--ARIAYAHGKMNEHALEQVVVDFWERKFDVLVSTTIIETGLDISNANTIIIDR 937

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
            A+ +GL+QLHQLRGRVGRG E +    L+  + PLS+ ++ RLS +    D   G  +A 
Sbjct: 938  ADKYGLSQLHQLRGRVGRGRERAYAYFLWDENKPLSETAHDRLSTIAANNDLGSGMQVAL 997

Query: 623  EDLKQRKEGEILGIKQSG 640
            +DL+ R  G +LG +QSG
Sbjct: 998  KDLEIRGAGNLLGGEQSG 1015


>gi|271969774|ref|YP_003343970.1| transcription-repair coupling factor [Streptosporangium roseum DSM
            43021]
 gi|270512949|gb|ACZ91227.1| transcription-repair coupling factor [Streptosporangium roseum DSM
            43021]
          Length = 1204

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 206/378 (54%), Gaps = 17/378 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P++ T  Q  AI ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 647  PYAETGDQLEAIDEVKRDMERGIPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 706

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L QQH     +      + V  ++        +  LE +  G   ++IGTH LF   
Sbjct: 707  TTLLVQQHLSTFAERFSGFPLNVRPMSRFQSDGEVKATLEGLREGSVDVVIGTHRLFSPE 766

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +++ +L L+I+DE+ RFGV+ +  +    T   VL M+ATPIPRTL +   G  ++S I 
Sbjct: 767  VRFKELGLIIIDEEQRFGVEHKEAMKHMRTQVDVLAMSATPIPRTLEMGLTGIREMSTIL 826

Query: 450  EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
              P  R PI T + P +  +I   I R    L    + +++  ++     S+   V    
Sbjct: 827  TPPEERHPILTFVGPYDNKQIGAAIRR---ELMRDGQIFFVHNRV-----SSINKVAAML 878

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              L     + +A+ HG+M++   E +M  F      LL+ TT++E G+DV +A+ +I++ 
Sbjct: 879  RELVPE--ARVAVAHGQMNEHQLEKIMVGFWEREFDLLVCTTIVESGLDVPNANTLIVDR 936

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAE 622
            A+++GL+QLHQLRGRVGRG E      LY P  PL++ ++ RL+ + ++TE   G  +A 
Sbjct: 937  ADNYGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATISQHTEMGAGMYVAM 996

Query: 623  EDLKQRKEGEILGIKQSG 640
            +DL+ R  G ILG +QSG
Sbjct: 997  KDLEIRGAGNILGAEQSG 1014


>gi|119025662|ref|YP_909507.1| transcription-repair coupling factor [Bifidobacterium adolescentis
            ATCC 15703]
 gi|118765246|dbj|BAF39425.1| transcription-repair coupling factor [Bifidobacterium adolescentis
            ATCC 15703]
          Length = 1188

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 210/384 (54%), Gaps = 14/384 (3%)

Query: 263  QKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            QK L +  P+  T  Q + I ++  DM +   M R++ GDVG GKT +A+ A   AV+  
Sbjct: 628  QKELEDAFPYQETADQLTTIDEVKSDMEKPIPMDRLICGDVGFGKTEIAVRAAFKAVQDS 687

Query: 322  GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             Q  ++ P  +L QQH+E   +  +   + V  ++         + ++ +  G   ++IG
Sbjct: 688  KQVAVLVPTTLLVQQHFETFTERFEGFPVNVAAMSRFQTAKEINETIKGLEDGSVDVVIG 747

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L    I++  L LVI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G
Sbjct: 748  THKLLNPKIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTG 807

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              ++S +   P  R P+ T +       +V   ++  L  G + +++  +++     +  
Sbjct: 808  IREMSTLATPPEDRLPVLTYVGAYEDA-QVTAAIRRELLRGGQVFYVHNRVQ-----DIS 861

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            SV  + + L     S + I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A+
Sbjct: 862  SVAAKIHELVPE--SHVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNAN 919

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--D 616
             +I+++A+ FGL+QLHQLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    
Sbjct: 920  TLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPTKPMTQQSHDRLATIAQNTALGS 979

Query: 617  GFLIAEEDLKQRKEGEILGIKQSG 640
            GF +A +DL+ R  G +LG +QSG
Sbjct: 980  GFDVAMKDLELRGTGNLLGDEQSG 1003


>gi|134288262|ref|YP_001110425.1| helicase domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134132912|gb|ABO59622.1| helicase domain protein [Burkholderia vietnamiensis G4]
          Length = 636

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 147/532 (27%), Positives = 257/532 (48%), Gaps = 47/532 (8%)

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
           F  G ++ + G++   + R  + +P  +  + +    PL +     P  +  +L  + + 
Sbjct: 100 FKLGDELHLYGEVTTWEGRRQLNNPDLVLASDRGRVVPLYQGK---PGQVKGELLSQAVA 156

Query: 177 EALSRL----PVLPEWI---EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
           +AL  +     +L E     E D      F   A+   ++H P   ++          L+
Sbjct: 157 QALPMVNDASCMLLEQAGMRESDFRNATGFNDPADLIRMLHLPPSVREGAAAIDTARSLS 216

Query: 230 YDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
              +L   I     R Q  + + G  I V+     +++  +P+  T  Q  AI +I+ D+
Sbjct: 217 LKAILNRAI-----RNQSHQPVAGSSIAVDRDKVGRLVAALPYPLTSDQAKAIDEIVADL 271

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
                M R+L GDVG+GK++  ++   AA   G +  I+AP  +L +Q    I++    T
Sbjct: 272 RSPFPMRRLLSGDVGTGKSVTFMVPAVAAHLEGARIAIIAPSQLLVEQLAGEIRQLFPGT 331

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF----QDSIQYYKLILVIVDEQH 404
            +  E+++G+           +I  G   I++GT A+     + +IQ+    LV+ DEQH
Sbjct: 332 PV-CEVVSGS-----------KIGEG---IVVGTTAVISAAKKSAIQFD---LVVADEQH 373

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           RF V Q+  L    T  + L  TAT IPRTL L   G + +S + E P  +K ++T I+ 
Sbjct: 374 RFSVDQKASLLALHT--NFLEATATAIPRTLALVQFGGVAVSVLRECPV-KKRVRTRIV- 429

Query: 465 INRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
            NR D   + + +   + EG +   I P  E+K + +  SV   +   H  +   + ++H
Sbjct: 430 -NRKDGGRLFDFVYQQIQEGGQVAVIYPLAEDKGDGDRSSVEAAYARFHAKWGDRVGMLH 488

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G++SD +K +V+   K G   +L+++TVIEVGI +     +++ NA+ FG++QLHQLRGR
Sbjct: 489 GKLSDDEKNTVIAKMKAGGIDILVSSTVIEVGITLPSLRAVVVVNADRFGVSQLHQLRGR 548

Query: 583 VGRGEEISSCILLYHPPLSK-NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           V R +       LY P  ++ ++  RL ++    DGF +AE D   R  G++
Sbjct: 549 VAR-KGGDGFFFLYLPEDAEDDAMARLRLVTECNDGFTLAERDADLRGFGDV 599


>gi|254993542|ref|ZP_05275732.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J2-064]
          Length = 259

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 97/249 (38%), Positives = 158/249 (63%), Gaps = 5/249 (2%)

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
            G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y ICP IEE ++ +
Sbjct: 1   FGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYIICPLIEESEKLD 60

Query: 500 FRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            ++ ++ FN L   + +     ++HG++   DKE +M  F N     L++TTV+EVG++V
Sbjct: 61  VQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNNKKIDCLVSTTVVEVGVNV 120

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+  P  ++    R+ ++  T DG
Sbjct: 121 PNATMMVIYDADRFGLAQLHQLRGRVGRGANQSYCILIADPK-TEVGKERMMIMSETNDG 179

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSV 676
           F+++E DL+ R  G+  G KQSG+P+F +A   +HD  +LEIAR+DA H++ ++  L + 
Sbjct: 180 FVVSERDLELRGPGDFFGRKQSGVPEFKVADM-VHDYRVLEIARQDAVHMIFEEDMLENK 238

Query: 677 RGQSIRILL 685
             + +  LL
Sbjct: 239 NYEKLVALL 247


>gi|326772339|ref|ZP_08231624.1| transcription-repair coupling factor [Actinomyces viscosus C505]
 gi|326638472|gb|EGE39373.1| transcription-repair coupling factor [Actinomyces viscosus C505]
          Length = 778

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 201/378 (53%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q S I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 200 PYTETPDQLSTIDEVKADMEKAQPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 259

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +L  QH E   +      + V  ++     A   K LE +  G   +++GTH L    
Sbjct: 260 TTLLVSQHAETFTERYAGFPVTVGALSRFQDAAESAKILEGLEKGSVDVVVGTHRLITGQ 319

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L LVI+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S + 
Sbjct: 320 VKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSMSATPIPRTLEMAVTGLREMSTLA 379

Query: 450 EKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R PI T +      ++   I R   +L EG + +++  ++E     +  +   R 
Sbjct: 380 TPPEDRHPILTYVGAYETKQVSAAIRR--ELLREG-QVFFVHNRVE-----DIDATAARL 431

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L     + +A  HG+M++   E+V+DSF      +L+ TT++E G+DV +A+ +I++ 
Sbjct: 432 AELVPE--ARVATAHGQMNEHQLEAVIDSFWRKETDVLVCTTIVETGLDVSNANTLIVDR 489

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
           A+  GL+QLHQLRGRVGRG E +    LY    PL++ +  RL  +    D   G  +A 
Sbjct: 490 ADRMGLSQLHQLRGRVGRGRERAYAYFLYPSDKPLTETALERLRTIATNTDLGAGMQVAM 549

Query: 623 EDLKQRKEGEILGIKQSG 640
           +DL+ R  G +LG +QSG
Sbjct: 550 KDLEIRGSGNLLGGEQSG 567


>gi|154487169|ref|ZP_02028576.1| hypothetical protein BIFADO_01009 [Bifidobacterium adolescentis
            L2-32]
 gi|154085032|gb|EDN84077.1| hypothetical protein BIFADO_01009 [Bifidobacterium adolescentis
            L2-32]
          Length = 1188

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 210/384 (54%), Gaps = 14/384 (3%)

Query: 263  QKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            QK L +  P+  T  Q + I ++  DM +   M R++ GDVG GKT +A+ A   AV+  
Sbjct: 628  QKELEDAFPYQETADQLTTIDEVKSDMEKPIPMDRLICGDVGFGKTEIAVRAAFKAVQDS 687

Query: 322  GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             Q  ++ P  +L QQH+E   +  +   + V  ++         + ++ +  G   ++IG
Sbjct: 688  KQVAVLVPTTLLVQQHFETFTERFEGFPVNVAAMSRFQTTKEINETIKGLEDGSVDVVIG 747

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L    I++  L LVI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G
Sbjct: 748  THKLLNPKIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTG 807

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              ++S +   P  R P+ T +       +V   ++  L  G + +++  +++     +  
Sbjct: 808  IREMSTLATPPEDRLPVLTYVGAYEDA-QVTAAIRRELLRGGQVFYVHNRVQ-----DIS 861

Query: 502  SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            SV  + + L     S + I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A+
Sbjct: 862  SVAAKIHELVPE--SHVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNAN 919

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--D 616
             +I+++A+ FGL+QLHQLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    
Sbjct: 920  TLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPTKPMTQQSHDRLATIAQNTALGS 979

Query: 617  GFLIAEEDLKQRKEGEILGIKQSG 640
            GF +A +DL+ R  G +LG +QSG
Sbjct: 980  GFDVAMKDLELRGTGNLLGDEQSG 1003


>gi|72160828|ref|YP_288485.1| transcription-repair coupling factor [Thermobifida fusca YX]
 gi|71914560|gb|AAZ54462.1| transcription-repair coupling factor [Thermobifida fusca YX]
          Length = 1210

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 206/379 (54%), Gaps = 19/379 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q +AI+++ +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P
Sbjct: 655  PYVETPDQLAAIEEVKRDMEKPVPMDRLICGDVGYGKTEVAVRAAFKAVQDGKQVAVLVP 714

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L QQH     +   +  + V  ++     A   +  E +  G+  ++IGTH L    
Sbjct: 715  TTLLVQQHLSTFTERYASFPVTVRPLSRFQSDAEIERIREGMRTGEVDVVIGTHRLLSPE 774

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
             Q+  L LVI+DE+ RFGV+ +  L +  T   VL M+ATPIPRTL +   G  +++ I 
Sbjct: 775  TQFKDLGLVIIDEEQRFGVEHKEALKRLRTQVDVLSMSATPIPRTLEMGLTGIREMTTIL 834

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI---CPQIEEKKESNFRSVVER 506
              P  R P+ T + P +         + ++ EG + +++      IE    +  R V E 
Sbjct: 835  TPPEERHPVLTFVGPYDEKQIAAAIRRELMREG-QVFFVHNRVASIERAAATVSRLVPE- 892

Query: 507  FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                     + +A  HG+M++   E VM  F      +L+ TT++E G+DV +A+ +I++
Sbjct: 893  ---------ARVAWAHGQMNEHQLERVMVDFWEKKFDVLVCTTIVESGLDVPNANTLIVD 943

Query: 567  NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRL-SVLKNTED--GFLIA 621
             A+ +GLAQLHQLRGRVGRG E +    LY P  PL++ ++ RL +V ++TE   G  +A
Sbjct: 944  RADTYGLAQLHQLRGRVGRGRERAYAYFLYPPDKPLTETAHERLATVAQHTESGAGMYVA 1003

Query: 622  EEDLKQRKEGEILGIKQSG 640
             +DL+ R  G ILG +QSG
Sbjct: 1004 MKDLEIRGAGNILGTEQSG 1022


>gi|296393668|ref|YP_003658552.1| transcription-repair coupling factor [Segniliparus rotundus DSM
            44985]
 gi|296180815|gb|ADG97721.1| transcription-repair coupling factor [Segniliparus rotundus DSM
            44985]
          Length = 1214

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 203/374 (54%), Gaps = 13/374 (3%)

Query: 272  SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
            +PT  Q + I ++  DM ++  M R++ GDVG GKT +A+ A   AV+ G Q V++AP  
Sbjct: 641  APTPDQLTTIGEVKADMEREVPMDRVVCGDVGFGKTEIAVRAAFKAVQDGKQVVVLAPTT 700

Query: 332  ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
            +LA QH     +      + V+ ++     A  +  + ++A GQ  ++IGTH + Q  ++
Sbjct: 701  LLADQHLRTFSERMAPFPVTVKGLSRFTDPAESKDTVAKVADGQVDVLIGTHRVLQSKVK 760

Query: 392  YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
            +  L LVIVDE+ RFGV+ +  +        VL ++ATPIPRTL ++  G  D+S I   
Sbjct: 761  FKDLGLVIVDEEQRFGVEHKEHIKALRVNVDVLTLSATPIPRTLEMSLTGIRDMSTILTP 820

Query: 452  PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            P  R P+ T +   +   +V   L+  L    + ++I       + S+      R   L 
Sbjct: 821  PEERFPVLTYVGAHDE-KQVAAALRRELVRDGQVFYI-----HNRVSSIDKTAARLKELV 874

Query: 512  EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                + +AI HG+M +   E+  ++F  G   +L+ TT++E G+D+ +A+ +++E A+  
Sbjct: 875  PE--ARVAIAHGQMGEEQLEATAEAFWRGEHDILVCTTIVESGLDIANANTLVVERADTL 932

Query: 572  GLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL---KNTEDGFLIAEEDLK 626
            GLAQLHQLRGRVGRG E +    LY P   LS+ ++ RL+ +    +   G  +A  DL+
Sbjct: 933  GLAQLHQLRGRVGRGGERAFAYFLYDPERSLSETAHERLATIAQHSSLGSGMAVAMRDLE 992

Query: 627  QRKEGEILGIKQSG 640
             R  G +LG +QSG
Sbjct: 993  IRGAGNVLGHEQSG 1006


>gi|313895795|ref|ZP_07829349.1| DEAD/DEAH box helicase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975220|gb|EFR40681.1| DEAD/DEAH box helicase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 412

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 122/400 (30%), Positives = 205/400 (51%), Gaps = 43/400 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL-QKRRPYKIL---LNDGT 98
           DLL Y+P ++ D+    +I+++      TI G I  H+  +   +RR + +L   + DGT
Sbjct: 31  DLLTYYPRAYEDQSRITRIADLRPGTRATIVGVI--HTVVERPTRRRGFTVLTALVGDGT 88

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
           G    ++F ++   LK+   EGR+I ++GK              Y +     +    I A
Sbjct: 89  GCAQAVWFNQR--FLKSKLREGRRIFLSGK------------ADYAYGGGGQLALTQITA 134

Query: 159 ------------------VYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSF 199
                             +Y+   GL+    ++++  AL      L E +   +L +   
Sbjct: 135 LEFLGAEESPASRLGILPIYAATEGLTQKQLRQMMEYALRETAAELTETLPDAVLTEYGL 194

Query: 200 PSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ-FKKEIGIPINVE 258
              A+AF  IH P++A++    S AR RLA++EL   Q  LL ++K+  + + GI     
Sbjct: 195 VGRADAFRRIHFPKRAEEL---SAARRRLAFEELYLIQCGLLALKKRSVESQRGIAHREN 251

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G     +L  +PF+ T+ Q++  +++ +DM     M R++QGDVGSGKT +AL+A+   V
Sbjct: 252 GARVAAVLEALPFTLTEDQQTVWREVARDMESPLPMRRLVQGDVGSGKTAIALLALVKTV 311

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           E+G Q   MAP  ILA+QHY+++++      I V  ++G + +  R +    +A  +  I
Sbjct: 312 ESGRQGAFMAPTEILARQHYDYLQELLTPLGIRVAFLSGRLAKKARTETDAALAAHEVDI 371

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           ++GTHAL +D + +  L LV+ DEQHRFGV QR  L ++A
Sbjct: 372 VVGTHALIEDHVAFAALGLVVTDEQHRFGVAQRSALEKRA 411


>gi|121610609|ref|YP_998416.1| helicase domain-containing protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121555249|gb|ABM59398.1| helicase domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 629

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/380 (30%), Positives = 203/380 (53%), Gaps = 23/380 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA-AVEAGGQAVIMAPIGI 332
           ++ Q  A+  I   ++ +     +L GDVG+GKTLV L+A+AA A  +G +  ++ P  +
Sbjct: 260 SQDQRRALNAIRLQVNDRRGARILLNGDVGTGKTLVFLLALAAIASTSGKRVAVVVPSDL 319

Query: 333 LAQQ-HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +A+Q H +   ++ Q    +V   +G++P               + ++IGT ALF  + +
Sbjct: 320 VARQIHAQAQARFPQLQPCLVMAGSGDVPD-------------DSLMLIGTQALFHRA-E 365

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           + +L  ++VDEQH+F V QR  L +  T  HV+  +ATPIPR+L L         +I   
Sbjct: 366 HLELEALVVDEQHKFSVAQRTVLARGHT--HVIEASATPIPRSLALAIFDGWMQVRIVNC 423

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  +  +  + +P +R  +V+      L  G K  ++ P+++ +  +  R+  ER +   
Sbjct: 424 PVQKTIVSRIAMPESR-RKVVALAHAHLQRGHKVVFLYPKVDGQG-ATVRAAGERLD--- 478

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +HF   +A++HG+M    KES + +F +G   ++ A+T +EVG+DV D  ++++  A+ F
Sbjct: 479 KHFQGKVAVVHGQMGRDAKESALKAFASGERPIIAASTAVEVGVDVPDIGLMVVSGADRF 538

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
            +AQLHQLRGR+ R    +  +++     SK +  RL  +    DGF +AE D++ R  G
Sbjct: 539 AVAQLHQLRGRLARNGGKAHFVMMLDKKPSKLTELRLRAVCQHADGFSLAERDMELRGFG 598

Query: 632 EILGIKQSGMPKFLIAQPEL 651
           ++LG  QSG        P L
Sbjct: 599 DVLGDLQSGQSSATFKLPRL 618


>gi|325067341|ref|ZP_08126014.1| transcription-repair coupling factor [Actinomyces oris K20]
          Length = 619

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 201/383 (52%), Gaps = 27/383 (7%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q S I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 142 PYTETPDQLSTIDEVKADMEKAQPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 201

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +L  QH E   +      + V  ++     A   K LE +  G   +++GTH L    
Sbjct: 202 TTLLVSQHAETFTERYAGFPVTVGALSRFQDAAESAKVLEGLEKGSVDVVVGTHRLITGQ 261

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L LVI+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S + 
Sbjct: 262 VKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSMSATPIPRTLEMAVTGLREMSTLA 321

Query: 450 EKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R PI T +      ++   I R   +L EG + +++  ++E+             
Sbjct: 322 TPPEDRHPILTYVGAYETKQVSAAIRR--ELLREG-QVFFVHNRVED------------I 366

Query: 508 NSLHEHFT-----SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           ++   H       + +A  HG+M++   E+V+DSF      +L+ TT++E G+DV +A+ 
Sbjct: 367 DATAAHLAELVPEARVATAHGQMNEHQLEAVIDSFWRKETDVLVCTTIVETGLDVSNANT 426

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---G 617
           +I++ A+  GL+QLHQLRGRVGRG E +    LY    PL++ +  RL  +    D   G
Sbjct: 427 LIVDRADRMGLSQLHQLRGRVGRGRERAYAYFLYPSDKPLTETALERLRTIATNTDLGAG 486

Query: 618 FLIAEEDLKQRKEGEILGIKQSG 640
             +A +DL+ R  G +LG +QSG
Sbjct: 487 MQVAMKDLEIRGSGNLLGGEQSG 509


>gi|256833153|ref|YP_003161880.1| transcription-repair coupling factor [Jonesia denitrificans DSM
            20603]
 gi|256686684|gb|ACV09577.1| transcription-repair coupling factor [Jonesia denitrificans DSM
            20603]
          Length = 1216

 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 128/372 (34%), Positives = 202/372 (54%), Gaps = 13/372 (3%)

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  I+ P  +L
Sbjct: 666  TPDQLATIDEVKADMEKMIPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAILVPTTLL 725

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             QQHY+   +      + V+ ++        ++ +  I+ G   ++IGTH L   SI + 
Sbjct: 726  VQQHYDTFSERYAGFPVTVKALSRFQSDKESQEVISGISEGTVDVVIGTHRLLSGSIHFK 785

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L LV++DE+ RFGV+ +  L Q  T   VL M+ATPIPRTL +   G  ++S +   P 
Sbjct: 786  DLGLVVIDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPE 845

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             R P+ T +   +    +    + +L EG+  Y     +  K E+   S   R   L   
Sbjct: 846  ERHPVLTYVGGYDDKQVIAAVRRELLREGQVFY-----VHNKVET-IESTAARIMDLVPE 899

Query: 514  FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              + + + HGRM++ + E V+  F      +LI+TT+IE G+DV +A+ +I+E ++  GL
Sbjct: 900  --ARVRVAHGRMNEHELEQVILDFWEKRFDVLISTTIIETGLDVSNANTLIVERSDVMGL 957

Query: 574  AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRL-SVLKNTE--DGFLIAEEDLKQR 628
            +QLHQLRGRVGRG E +     + P  PL++ ++ RL ++  NTE   G  +A +DL+ R
Sbjct: 958  SQLHQLRGRVGRGRERAYAYFFFPPEKPLTETAHERLQTIAANTELGSGMQVAMKDLEIR 1017

Query: 629  KEGEILGIKQSG 640
              G +LG +QSG
Sbjct: 1018 GAGNLLGGEQSG 1029


>gi|329948064|ref|ZP_08294965.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328523203|gb|EGF50304.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 1079

 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 201/378 (53%), Gaps = 17/378 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q S I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 501 PYTETPDQLSTIDEVKADMEKAQPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 560

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +L  QH E   +      + V  ++     A   K LE +  G   +++GTH L    
Sbjct: 561 TTLLVSQHAETFTERYAGFPVTVGALSRFQDAAESAKILEGLEKGTVDVVVGTHRLITGQ 620

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L LVI+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S + 
Sbjct: 621 VRFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSMSATPIPRTLEMAVTGLREMSTLA 680

Query: 450 EKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R PI T +      ++   I R   +L EG + +++  ++E     +  +   R 
Sbjct: 681 TPPEDRHPILTYVGAYETKQVSAAIRR--ELLREG-QVFFVHNRVE-----DIDATAARL 732

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L     + +A  HG+M++   E+V+DSF      +L+ TT++E G+DV +A+ +I++ 
Sbjct: 733 AELVPE--ARVATAHGQMNEHQLEAVIDSFWRKETDVLVCTTIVETGLDVSNANTLIVDR 790

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
           A+  GL+QLHQLRGRVGRG E +    LY    PL++ +  RL  +    D   G  +A 
Sbjct: 791 ADRMGLSQLHQLRGRVGRGRERAYAYFLYPSDKPLTETALERLRTIATNTDLGAGMQVAM 850

Query: 623 EDLKQRKEGEILGIKQSG 640
           +DL+ R  G +LG +QSG
Sbjct: 851 KDLEIRGSGNLLGGEQSG 868


>gi|237753325|ref|ZP_04583805.1| ATP-dependent DNA helicase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375592|gb|EEO25683.1| ATP-dependent DNA helicase [Helicobacter winghamensis ATCC BAA-430]
          Length = 598

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 201/380 (52%), Gaps = 29/380 (7%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           + ++PF  TK Q+ AIKDI   +  +    R++ GDVG GKT+V L ++  A  +  ++V
Sbjct: 218 INSLPFVLTKGQKEAIKDIQNSLKGEFAARRVIVGDVGCGKTMVILASVLIAYPS--KSV 275

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  +LA+Q +   +K+   T     +  G + Q ++      I       +IGTHAL
Sbjct: 276 LMAPTSVLAKQLFNEAQKFLPKT-----LKVGLLTQRNK------INVQDCDFLIGTHAL 324

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KATAPHVLLMTATPIPRTLVLTSLG 441
               +      LV++DEQHRFG  QR  L +    ++   H+L  +ATPIPRT  + +  
Sbjct: 325 LYQDLS--NRALVMIDEQHRFGTAQRSALEKMFNTESQKAHILQFSATPIPRTQAMIASN 382

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
            +D S I + P  +K I T II       ++E ++  + +  +   + P +EE +  N+ 
Sbjct: 383 FVDFSFIKDIPF-KKDITTQIIHEEDFKGLLEHIQKEIQKENQIIIVYPFVEESQMLNYT 441

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           ++ +     + HF  ++   HG+  D  KESV++ F+     +L+ATTVIEVGI +   S
Sbjct: 442 ALKDGEEFWNRHF-KAVYSTHGK--DKYKESVLEEFRE-KGSILLATTVIEVGISLPKLS 497

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            I+I  AE  GLA LHQLRGRV R      C L       + +  RL     T++GF IA
Sbjct: 498 TIVIVGAERLGLATLHQLRGRVSRNGLKGYCFLY----TKQKTTERLEKFAKTQNGFEIA 553

Query: 622 EEDLKQRKEGEIL-GIKQSG 640
           + DL+ R  G++L GI QSG
Sbjct: 554 QLDLEYRNSGDLLSGIHQSG 573


>gi|297559048|ref|YP_003678022.1| transcription-repair coupling factor [Nocardiopsis dassonvillei
            subsp. dassonvillei DSM 43111]
 gi|296843496|gb|ADH65516.1| transcription-repair coupling factor [Nocardiopsis dassonvillei
            subsp. dassonvillei DSM 43111]
          Length = 1201

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 209/381 (54%), Gaps = 23/381 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q +AI ++ +DMS+   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P
Sbjct: 642  PYVETPDQLAAIDEVKKDMSRSVPMDRLICGDVGYGKTEVAVRAAFKAVQDGKQVALLVP 701

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L QQH     +   +  + V+ ++            E +  G+  ++IGTH L    
Sbjct: 702  TTLLVQQHLSTFTERYASFPVTVKPMSRFQTDGEVEATREGLRSGEVDVVIGTHRLLSSE 761

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
             ++  L LVI+DE+ RFGV+ +  L +  T   VL M+ATPIPRTL +   G  +++ I 
Sbjct: 762  TRFKDLGLVIIDEEQRFGVEHKEALKRLRTQVDVLAMSATPIPRTLEMGLTGIREMTTIL 821

Query: 450  EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWI---CPQIEEKKESNFRSVV 504
              P  R P+ T + P    +I   I R   ++ EG+  +++      I++   S  R V 
Sbjct: 822  TPPEERHPVLTFVGPYEDKQITAAIRR--ELMREGQ-VFFVHNRVASIDKVAASIQRLVP 878

Query: 505  ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            E          + +A  HG+M++   E VM  F      +L++TT++E G+DV +A+ +I
Sbjct: 879  E----------ARVAYAHGQMNEQQLEKVMVDFWEKNFDVLVSTTIVESGLDVPNANTLI 928

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRL-SVLKNTED--GFL 619
            I+ A+ +GL+QLHQLRGRVGRG E +    LY P  PL++ +Y RL +V ++TE   G  
Sbjct: 929  IDRADTYGLSQLHQLRGRVGRGRERAYAYFLYPPERPLTETAYERLATVAQHTETGAGMY 988

Query: 620  IAEEDLKQRKEGEILGIKQSG 640
            +A +DL+ R  G ILG +QSG
Sbjct: 989  VAMKDLEIRGAGNILGAEQSG 1009


>gi|212716156|ref|ZP_03324284.1| hypothetical protein BIFCAT_01072 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661523|gb|EEB22098.1| hypothetical protein BIFCAT_01072 [Bifidobacterium catenulatum DSM
           16992]
          Length = 1182

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/384 (32%), Positives = 209/384 (54%), Gaps = 14/384 (3%)

Query: 263 QKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           QK L +  P+  T  Q + I ++  DM +   M R++ GDVG GKT +A+ A   AV+  
Sbjct: 622 QKELEDAFPYQETADQLTTIDEVKSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAVQDS 681

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++ P  +L QQH+E   +  +   + V  ++           ++ +  G   ++IG
Sbjct: 682 KQVAVLVPTTLLVQQHFETFTERFEGFPVEVRAMSRFQTTKEINDTIKGLEDGSVDVVIG 741

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH L    +++  L LVI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G
Sbjct: 742 THKLLGPKVKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTG 801

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             ++S +   P  R P+ T +       +V   ++  L  G + +++  +++     +  
Sbjct: 802 IREMSTLATPPEDRLPVLTYVGAYEDA-QVTAAVRRELLRGGQVFYVHNRVQ-----DIA 855

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           SV  + + L     S + I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A+
Sbjct: 856 SVAAKIHELVPE--SHVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNAN 913

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--D 616
            +I+++A+ FGL+QLHQLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    
Sbjct: 914 TLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPTKPMTQQSHDRLATIAQNTALGS 973

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF +A +DL+ R  G +LG +QSG
Sbjct: 974 GFDVAMKDLELRGTGNLLGDEQSG 997


>gi|170782785|ref|YP_001711119.1| transcription-repair coupling factor [Clavibacter michiganensis
            subsp. sepedonicus]
 gi|169157355|emb|CAQ02542.1| transcription-repair coupling factor [Clavibacter michiganensis
            subsp. sepedonicus]
          Length = 1210

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/376 (33%), Positives = 205/376 (54%), Gaps = 13/376 (3%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF  T  Q + I ++ +DM     M R++ GDVG GKT +A+ A   AV+ G Q V++ P
Sbjct: 649  PFMETPDQLTVIDEVKRDMESPIPMDRLVSGDVGFGKTEIAVRAAFKAVQDGKQVVMLVP 708

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L +QH+E   +      + +  ++    +   R+ ++ +  G   ++IGTH L   S
Sbjct: 709  TTLLVKQHFETFSERFAGFPVHLRQLSRFQSEKESRETVKGLEDGSVDVVIGTHRLLTGS 768

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I +  + LVI+DE+ RFGV+ +  L +      +L M+ATPIPRTL +   G  ++S + 
Sbjct: 769  IAFKDVGLVIIDEEQRFGVEHKDALKKLKANVDILAMSATPIPRTLEMAVTGIREMSTLA 828

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R PI T + P N   ++   ++  L    + +++  ++     S+   V      
Sbjct: 829  TPPEDRHPILTFVGP-NSEKQIAAAIRRELLREGQVFFVHNRV-----SSINRVASELAE 882

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            L     + +A+ HG+MS+   E V+  F      +L++TT+IE G+D+ +A+ +II+ A+
Sbjct: 883  LVPE--ARVAVAHGKMSEAMLEQVIVDFWERKFDVLVSTTIIETGLDIANANTLIIDRAD 940

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEED 624
             +GL+QLHQLRGRVGRG E +    LY    PLS+ ++ RLS +  N E   G  +A +D
Sbjct: 941  KYGLSQLHQLRGRVGRGRERAYAYFLYDADKPLSETAHDRLSTIAANNELGSGMQVALKD 1000

Query: 625  LKQRKEGEILGIKQSG 640
            L+ R  G +LG +QSG
Sbjct: 1001 LEIRGAGNLLGGEQSG 1016


>gi|218462028|ref|ZP_03502119.1| ATP-dependent DNA helicase protein [Rhizobium etli Kim 5]
          Length = 225

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/225 (40%), Positives = 129/225 (57%), Gaps = 1/225 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K++      + R IDLLF+ P S IDR  +P 
Sbjct: 1   MRPAILDPLFSPISGLPGVGPKIAELLVKLLGRETPEDCRVIDLLFHAPFSLIDRRNQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 61  IALSPQGAIVTITARVDRHQVPPRGKTNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPV 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GK+     R  MVHP YI    +  N PL+E +Y L  GLS    +KII  AL
Sbjct: 121 DAEVTVSGKVDWFNGRASMVHPDYIVRAEEAENLPLVEPIYPLTAGLSPKTLRKIIDAAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPA 224
            R P LPEWI   L QK+  PSI ++F+++H PR   D +  +PA
Sbjct: 181 PRFPELPEWINSALAQKQGLPSIRDSFHMLHEPRDPADIDPQAPA 225


>gi|289178790|gb|ADC86036.1| Transcription-repair coupling factor [Bifidobacterium animalis subsp.
            lactis BB-12]
          Length = 1248

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/386 (32%), Positives = 208/386 (53%), Gaps = 18/386 (4%)

Query: 263  QKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            QK L +  P+  T  Q + I D+  DM +   M R++ GDVG GKT +A+ A   AV+  
Sbjct: 688  QKELEDAFPYQETADQLTTIDDVKADMEKPIPMDRLICGDVGFGKTEIAIRAAFKAVQDS 747

Query: 322  GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             Q  ++ P  +L QQH +   +  +   + V  ++         + ++ +A G   ++IG
Sbjct: 748  KQVAVLVPTTLLVQQHLQTFTERFEGFPVNVRAMSRFQSTKEINETIKGLADGTVDVVIG 807

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L    I++  L LVI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G
Sbjct: 808  THKLLNPKIKFKDLGLVIIDEEQRFGVEAKETLKAVRTNVDVLSLSATPIPRTLEMAVTG 867

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499
              ++S +   P  R P+ T +       +V   ++  L  G + ++I  ++E  E+K   
Sbjct: 868  IREMSTLATPPEDRLPVLTYVGAYEDA-QVTAAIRRELLRGGQVFYIHNRVEGIEEKAKR 926

Query: 500  FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             + +V           + I I HG+M     + ++  F +    +L+ TT++E G+D+ +
Sbjct: 927  LQDLVPE---------ARIGIAHGKMGRKQLDQIIRDFWHRDIDVLLCTTIVETGLDISN 977

Query: 560  ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRL-SVLKNTE- 615
            A+ +I++ A+ FGL+QLHQLRGRVGRG + +    LY P  P+++ S+ RL ++ +NT  
Sbjct: 978  ANTLIVDRADRFGLSQLHQLRGRVGRGRDRAYAYFLYDPSKPMTEQSHERLVTIAQNTAL 1037

Query: 616  -DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF +A +DL+ R  G +LG +QSG
Sbjct: 1038 GSGFDVAMKDLELRGTGNLLGDEQSG 1063


>gi|154147968|ref|YP_001406057.1| transcription-repair coupling factor [Campylobacter hominis ATCC
           BAA-381]
 gi|153803977|gb|ABS50984.1| transcription-repair coupling factor [Campylobacter hominis ATCC
           BAA-381]
          Length = 986

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/390 (32%), Positives = 209/390 (53%), Gaps = 31/390 (7%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           K L +  F  TK Q++A+  I  D+     M R++ GDVG GKT VA+ A+ A +++G  
Sbjct: 461 KFLSSAGFEYTKDQQNAVNAIFTDLKSGKVMDRLISGDVGFGKTEVAMNAIFACIKSGYS 520

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIV---EIITGNMPQAHRRKALERIAHGQAHIII 380
           A+   P  +L+ QHY  +K+     +I V   +  TG   +A   K   +I      +II
Sbjct: 521 ALFFVPTTLLSAQHYATLKERLTPFKIQVFRLDRFTGAKEKAEISK---KIKDKIPIVII 577

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL--VLT 438
           GTHAL   +++   L L+I+DE+H+FGV+Q+ KL  K+ A HVL M+ATPIPR+L   L+
Sbjct: 578 GTHALL--NMEVANLGLIIIDEEHKFGVKQKEKLKSKSAASHVLSMSATPIPRSLNMALS 635

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIE--EK 495
           SL    +  ++  P  R  ++T +    R +++I E +   +  G + +++   I   E 
Sbjct: 636 SLKSYSV--LSTPPLDRLDVRTFVKE--RDEKIIKEAIMREIRRGGQVFFVHNHIATIET 691

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N + +V             I I+H ++     E+ +  F+ G  ++L+ T+++E GI
Sbjct: 692 CRKNLQKIVPNL---------KILILHSQIDAKTTENEILKFEAGEYEILLCTSIVESGI 742

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN 613
            + + + II+ENA  FG+A LHQLRGRVGR  +   C  +      L++++  RL  L++
Sbjct: 743 HMPNVNTIIVENANKFGIADLHQLRGRVGRSAKQGFCYFMVEDKTALNEDAIKRLIALES 802

Query: 614 TE---DGFLIAEEDLKQRKEGEILGIKQSG 640
                 G ++A  DL+ R  G ++G  QSG
Sbjct: 803 NSFLGSGSVLAYHDLEIRGGGNLIGEAQSG 832


>gi|269957468|ref|YP_003327257.1| transcription-repair coupling factor [Xylanimonas cellulosilytica DSM
            15894]
 gi|269306149|gb|ACZ31699.1| transcription-repair coupling factor [Xylanimonas cellulosilytica DSM
            15894]
          Length = 1218

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 200/374 (53%), Gaps = 17/374 (4%)

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q S I ++  DM +   M R++ GDVG GKT +A+ A   A++ G Q  ++ P  +L
Sbjct: 664  TPDQLSTIDEVKADMEKPTPMDRLVCGDVGYGKTEIAIRAAFKAIQDGKQVAVLVPTTLL 723

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             QQH+E   +  Q   + V  ++         + ++ +  G   ++IGTH L   ++Q+ 
Sbjct: 724  VQQHFETFSERYQGFPVKVAALSRFQNPRESEETIKGLKDGTVDVVIGTHRLITGAVQFK 783

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L LVI+DE+ RFGV+ +  L Q  T   VL M+ATPIPRTL +   G  ++S +   P 
Sbjct: 784  DLGLVIIDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPE 843

Query: 454  GRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
             R P+ T +      +I   + R   +L EG+  Y     +  + ES  R+       + 
Sbjct: 844  ERHPVLTYVGAYEERQISAAVRR--ELLREGQVFY-----VHNRVESIQRTASRLAELVP 896

Query: 512  EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            E   + I + HG+M +   + V+  F      +L+ TT++E G+D+ +A+ +I+E A+  
Sbjct: 897  E---ARIGVAHGKMGEHQLDQVIRGFWEKELDVLVCTTIVETGLDISNANTLILERADML 953

Query: 572  GLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GL+QLHQLRGRVGRG E +    LY P  PL++ ++ RL+ +    D   G  IA +DL+
Sbjct: 954  GLSQLHQLRGRVGRGRERAYAYFLYPPEKPLTEQAHDRLATMAAHTDLGAGMQIAMKDLE 1013

Query: 627  QRKEGEILGIKQSG 640
             R  G +LG +QSG
Sbjct: 1014 IRGAGNLLGGEQSG 1027


>gi|183601453|ref|ZP_02962823.1| transcription-repair coupling factor [Bifidobacterium animalis subsp.
            lactis HN019]
 gi|241191047|ref|YP_002968441.1| transcription-repair coupling factor [Bifidobacterium animalis subsp.
            lactis Bl-04]
 gi|241196453|ref|YP_002970008.1| transcription-repair coupling factor [Bifidobacterium animalis subsp.
            lactis DSM 10140]
 gi|183219059|gb|EDT89700.1| transcription-repair coupling factor [Bifidobacterium animalis subsp.
            lactis HN019]
 gi|240249439|gb|ACS46379.1| transcription-repair coupling factor [Bifidobacterium animalis subsp.
            lactis Bl-04]
 gi|240251007|gb|ACS47946.1| transcription-repair coupling factor [Bifidobacterium animalis subsp.
            lactis DSM 10140]
 gi|295794036|gb|ADG33571.1| transcription-repair coupling factor [Bifidobacterium animalis subsp.
            lactis V9]
          Length = 1194

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/386 (32%), Positives = 208/386 (53%), Gaps = 18/386 (4%)

Query: 263  QKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            QK L +  P+  T  Q + I D+  DM +   M R++ GDVG GKT +A+ A   AV+  
Sbjct: 634  QKELEDAFPYQETADQLTTIDDVKADMEKPIPMDRLICGDVGFGKTEIAIRAAFKAVQDS 693

Query: 322  GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             Q  ++ P  +L QQH +   +  +   + V  ++         + ++ +A G   ++IG
Sbjct: 694  KQVAVLVPTTLLVQQHLQTFTERFEGFPVNVRAMSRFQSTKEINETIKGLADGTVDVVIG 753

Query: 382  THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            TH L    I++  L LVI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G
Sbjct: 754  THKLLNPKIKFKDLGLVIIDEEQRFGVEAKETLKAVRTNVDVLSLSATPIPRTLEMAVTG 813

Query: 442  DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESN 499
              ++S +   P  R P+ T +       +V   ++  L  G + ++I  ++E  E+K   
Sbjct: 814  IREMSTLATPPEDRLPVLTYVGAYEDA-QVTAAIRRELLRGGQVFYIHNRVEGIEEKAKR 872

Query: 500  FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             + +V           + I I HG+M     + ++  F +    +L+ TT++E G+D+ +
Sbjct: 873  LQDLVPE---------ARIGIAHGKMGRKQLDQIIRDFWHRDIDVLLCTTIVETGLDISN 923

Query: 560  ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRL-SVLKNTE- 615
            A+ +I++ A+ FGL+QLHQLRGRVGRG + +    LY P  P+++ S+ RL ++ +NT  
Sbjct: 924  ANTLIVDRADRFGLSQLHQLRGRVGRGRDRAYAYFLYDPSKPMTEQSHERLVTIAQNTAL 983

Query: 616  -DGFLIAEEDLKQRKEGEILGIKQSG 640
              GF +A +DL+ R  G +LG +QSG
Sbjct: 984  GSGFDVAMKDLELRGTGNLLGDEQSG 1009


>gi|256824567|ref|YP_003148527.1| transcription-repair coupling factor Mfd [Kytococcus sedentarius DSM
            20547]
 gi|256687960|gb|ACV05762.1| transcription-repair coupling factor Mfd [Kytococcus sedentarius DSM
            20547]
          Length = 1244

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/375 (34%), Positives = 204/375 (54%), Gaps = 19/375 (5%)

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q S+I+++  DM +   M R++ GDVG GKT +A+ A   A++   Q  ++ P  +L
Sbjct: 686  TTDQLSSIEEVKADMEKSVPMDRLICGDVGYGKTEIAVRAAFKAIQDSKQVAVLVPTTLL 745

Query: 334  AQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
             QQH + F ++Y Q   + V  ++     A  +  +E +  G   ++IGTH L   S+++
Sbjct: 746  VQQHLQTFTERYAQFP-VTVRALSRFSSDADAKATIEGLRDGSVDLVIGTHRLLSSSVRF 804

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L LVI+DE+ RFGV+ + +L    TA  VL M+ATPIPRTL +   G  ++S +   P
Sbjct: 805  KDLGLVIIDEEQRFGVEHKEQLKTLRTAVDVLAMSATPIPRTLEMAVTGIREMSTLATPP 864

Query: 453  AGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
              R P+ T +      +I   I R   +L EG+  Y         K +    V  R   L
Sbjct: 865  EERHPVLTYVGAYEEKQIAAAIHR--ELLREGQVFY------VHNKVATIDKVASRLREL 916

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + I + HG+M +   E V+  F      +L++TT++E G+D+ +A+ +I++ A+ 
Sbjct: 917  VPE--ARIEVAHGQMGEHRLEQVVTDFWERKFDVLVSTTIVETGLDIANANTLILDRADT 974

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
            FGL+QLHQLRGRVGRG E +    LY P  PL++ ++ RL  + +  D   G  +A +DL
Sbjct: 975  FGLSQLHQLRGRVGRGRERAYAYFLYPPEKPLTETAHDRLRTIASHTDLGAGMQVAMKDL 1034

Query: 626  KQRKEGEILGIKQSG 640
            + R  G +LG +QSG
Sbjct: 1035 EIRGAGNLLGGEQSG 1049


>gi|152965035|ref|YP_001360819.1| transcription-repair coupling factor [Kineococcus radiotolerans
           SRS30216]
 gi|151359552|gb|ABS02555.1| transcription-repair coupling factor [Kineococcus radiotolerans
           SRS30216]
          Length = 1193

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 204/379 (53%), Gaps = 19/379 (5%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q ++I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P
Sbjct: 629 PYVETPDQLASIDEVKADMMKPVPMDRLICGDVGYGKTEIALRAAFKAVQDGKQVAVLVP 688

Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             +L QQH++ F ++Y Q   ++ + ++   P    ++ ++ +A G   I+IGTH L   
Sbjct: 689 TTLLVQQHFKTFAERYAQ-FPVVAKPLSRFTPGKEAKETIKGLADGSVDIVIGTHRLLSG 747

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + +  L LV+VDE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S +
Sbjct: 748 EVAFKDLGLVVVDEEQRFGVEHKEALKTLRTNVDVLAMSATPIPRTLEMAVTGIREMSTL 807

Query: 449 TEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
              P  R P+ T +      +I   I R   +L EG+  Y         + S+      R
Sbjct: 808 ATPPEERHPVLTYVGGQEEKQITAAIRR--ELLREGQVFYV------HNRVSSIERTAAR 859

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              L     + IA  HG+M +   E V+  F      +L+ TT++E G+D+ +A+ +I+E
Sbjct: 860 LKELVPE--ARIATAHGQMGEHRLEQVVVDFWEKRFDVLVCTTIVETGLDISNANTLIVE 917

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIA 621
            A+  GL+QLHQLRGRVGRG E +    L+ P  PL++ ++ RL+ +    D   G  +A
Sbjct: 918 RADAMGLSQLHQLRGRVGRGRERAYAYFLFPPEKPLTETAHDRLATIAQHTDLGSGMAVA 977

Query: 622 EEDLKQRKEGEILGIKQSG 640
            +DL+ R  G +LG +QSG
Sbjct: 978 MKDLEIRGAGNMLGGEQSG 996


>gi|255070749|ref|XP_002507456.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
 gi|226522731|gb|ACO68714.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
          Length = 1473

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/230 (43%), Positives = 140/230 (60%), Gaps = 13/230 (5%)

Query: 420  APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT-VIIPINRIDEVIERLKVV 478
            APHVL M+ATPIPRTL +   G++ +S I EKPAGR PI T ++I  + ID+    +   
Sbjct: 1191 APHVLAMSATPIPRTLAMCKHGEMALSSIDEKPAGRLPIYTKLLIGPDGIDDAHRAMVEE 1250

Query: 479  LSEGKKAYWICPQIEEKKESNFRSVVERFNS-------LHEHFTS-SIAIIHGRMSDIDK 530
            +  G + Y I P +      +F    ERF S       L E F      I+HG+M+  +K
Sbjct: 1251 VQTGGQCYVITPLVNASTADSF----ERFKSAEVEHKRLVEKFPQIKFGILHGQMNSEEK 1306

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             + + +F +G  ++L+AT+V+EVG+DV +AS+IIIE+A+  G++ LHQLRGRVGRG   S
Sbjct: 1307 AAALKAFADGHTQVLVATSVVEVGVDVPNASVIIIEDADRHGVSTLHQLRGRVGRGSRQS 1366

Query: 591  SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
             C LL        S  RL VL+ + +GF IAE DL+ R  G++LG +QSG
Sbjct: 1367 KCFLLVGDEAGYPSQQRLRVLERSNNGFHIAESDLRMRGAGDLLGTRQSG 1416



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/233 (39%), Positives = 133/233 (57%), Gaps = 8/233 (3%)

Query: 190  EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            E  +L +    S  +A   IH P      +    ARERLA++EL+  Q++LL  R + ++
Sbjct: 883  ESSVLPELQLISHVDAMQFIHAP---ATVDQVVAARERLAFEELVLLQVSLLQERNRAQR 939

Query: 250  EIGIPINVEGKIAQKILRNI-PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
              G  +++        LR +  FS T+ QE+A+++ILQDMS    MLR+LQGDVG GKT+
Sbjct: 940  SGGEGVSIVSTSMCDELRGVLDFSLTRGQETALEEILQDMSGTTPMLRLLQGDVGCGKTI 999

Query: 309  VALIAMAAAVEAGGQAVIMAPIGILAQQHY---EFIKKYTQNTQIIVEIITGNMPQAHRR 365
            VA + + AAV  G Q   MAP  +LA QH    E +    +N   +V ++TG+ P+  R 
Sbjct: 1000 VAALGLLAAVGNGHQGAFMAPTEVLATQHATTLENVFGRLENPPRVV-LLTGSTPKKERD 1058

Query: 366  KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
             AL  I  G+  I++GTH+L  + + +  L L +VDEQHRFGV+QR  L  K 
Sbjct: 1059 AALRLIESGEGQIVVGTHSLISEDVVFKSLGLAVVDEQHRFGVEQRAALAGKG 1111


>gi|148273452|ref|YP_001223013.1| putative transcription-repair coupling factor [Clavibacter
            michiganensis subsp. michiganensis NCPPB 382]
 gi|147831382|emb|CAN02340.1| putative transcription-repair coupling factor [Clavibacter
            michiganensis subsp. michiganensis NCPPB 382]
          Length = 1210

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/376 (32%), Positives = 205/376 (54%), Gaps = 13/376 (3%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF  T  Q + I ++ +DM     M R++ GDVG GKT +A+ A   AV+ G Q V++ P
Sbjct: 649  PFMETPDQLTVIDEVKRDMESPIPMDRLVSGDVGFGKTEIAVRAAFKAVQDGKQVVMLVP 708

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L +QH+E   +      + +  ++    +   R+ ++ +  G   ++IGTH L   +
Sbjct: 709  TTLLVKQHFETFSERFAGFPVHLRQLSRFQSEKESRETVKGLEDGSVDVVIGTHRLLTGN 768

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I +  + LVI+DE+ RFGV+ +  L +      +L M+ATPIPRTL +   G  ++S + 
Sbjct: 769  IAFKDVGLVIIDEEQRFGVEHKDALKKLKANVDILAMSATPIPRTLEMAVTGIREMSTLA 828

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R PI T + P N   ++   ++  L    + +++  ++     S+   V      
Sbjct: 829  TPPEDRHPILTFVGP-NSEKQIAAAIRRELLREGQVFFVHNRV-----SSINRVASELAE 882

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            L     + +A+ HG+MS+   E V+  F      +L++TT+IE G+D+ +A+ +II+ A+
Sbjct: 883  LVPE--ARVAVAHGKMSEAMLEQVIVDFWERKFDVLVSTTIIETGLDIANANTLIIDRAD 940

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--DGFLIAEED 624
             +GL+QLHQLRGRVGRG E +    LY    PLS+ ++ RLS +  N E   G  +A +D
Sbjct: 941  KYGLSQLHQLRGRVGRGRERAYAYFLYDADKPLSETAHDRLSTIAANNELGSGMQVALKD 1000

Query: 625  LKQRKEGEILGIKQSG 640
            L+ R  G +LG +QSG
Sbjct: 1001 LEIRGAGNLLGGEQSG 1016


>gi|229819510|ref|YP_002881036.1| transcription-repair coupling factor [Beutenbergia cavernae DSM
            12333]
 gi|229565423|gb|ACQ79274.1| transcription-repair coupling factor [Beutenbergia cavernae DSM
            12333]
          Length = 1205

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 197/376 (52%), Gaps = 13/376 (3%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P   T  Q   I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 644  PHIETPDQVVTIDEVKADMEKSVPMDRLVCGDVGYGKTEIAIRAAFKAVQDGKQVAVLVP 703

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L QQH+E   +      + V+ ++     A      E +  G   ++IGTH L    
Sbjct: 704  TTLLVQQHFETFSERYAGFPVTVKALSRFQTDAEATAVREGVQDGSVDVVIGTHRLLTGE 763

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +++  L LV+VDE+ RFGV+ +  L Q  T   VL M+ATPIPRTL +   G  ++S + 
Sbjct: 764  VRFKDLGLVVVDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEMAVTGIREMSTLA 823

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R P+ T +             + +L EG+  Y     +  + ES  R+   R   
Sbjct: 824  TPPEERHPVLTFVGAYEEKQIAAAIRRELLREGQVFY-----VHNRVESIERAAA-RLQE 877

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            L     + IA+ HG+M++   E V+  F      +L+ TT+IE G+D+ +A+ +I+E A+
Sbjct: 878  LVPE--ARIAVAHGKMNEHQLERVIVDFWEKRFDVLVCTTIIETGLDISNANTLILERAD 935

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEED 624
              GL+QLHQLRGRVGRG E +    LY P  PL++ ++ RL+ +    D   G  +A +D
Sbjct: 936  VLGLSQLHQLRGRVGRGRERAYSYFLYPPEKPLTETAHDRLATIAANTDLGSGMQVALKD 995

Query: 625  LKQRKEGEILGIKQSG 640
            L+ R  G +LG +QSG
Sbjct: 996  LEIRGAGNLLGGEQSG 1011


>gi|171743238|ref|ZP_02919045.1| hypothetical protein BIFDEN_02367 [Bifidobacterium dentium ATCC
           27678]
 gi|283455784|ref|YP_003360348.1| transcription-repair coupling factor [Bifidobacterium dentium Bd1]
 gi|171278852|gb|EDT46513.1| hypothetical protein BIFDEN_02367 [Bifidobacterium dentium ATCC
           27678]
 gi|283102418|gb|ADB09524.1| Transcription-repair coupling factor [Bifidobacterium dentium Bd1]
          Length = 1173

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/384 (32%), Positives = 208/384 (54%), Gaps = 14/384 (3%)

Query: 263 QKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           QK L +  P+  T  Q + I ++  DM +   M R++ GDVG GKT +A+ A   AV+  
Sbjct: 613 QKELEDAFPYQETADQLTTIDEVKSDMERSVPMDRLICGDVGFGKTEIAVRAAFKAVQDS 672

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++ P  +L QQH+E   +  +   + V  ++           +  +  G   ++IG
Sbjct: 673 KQVAVLVPTTLLVQQHFETFTERYEGFPVNVAAMSRFQTAKEINDTITGLEDGTVDVVIG 732

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH L    I++  L LVI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G
Sbjct: 733 THKLLNPKIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTG 792

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             ++S +   P  R P+ T +       ++   ++  L  G + +++  +++     +  
Sbjct: 793 IREMSTLATPPEDRLPVLTYVGAYEDA-QITAAVRRELLRGGQVFYVHNRVQ-----DIA 846

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           SV  + + L     + + I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A+
Sbjct: 847 SVAAKIHDLVPE--AHVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNAN 904

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--D 616
            +I+++A+ FGL+QLHQLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    
Sbjct: 905 TLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPAKPMTQQSHDRLATIAQNTALGS 964

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF +A +DL+ R  G +LG +QSG
Sbjct: 965 GFDVAMKDLELRGTGNLLGDEQSG 988


>gi|317124068|ref|YP_004098180.1| transcription-repair coupling factor [Intrasporangium calvum DSM
            43043]
 gi|315588156|gb|ADU47453.1| transcription-repair coupling factor [Intrasporangium calvum DSM
            43043]
          Length = 1208

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 139/432 (32%), Positives = 225/432 (52%), Gaps = 25/432 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT        Y + +A  +  L   +Q  K  G   + +    +++     +  T  Q 
Sbjct: 595  DWTRTKSRAKRYVKQIAADLIRLYSARQATK--GHAFSADTPWQRELEDAFAYVETPDQL 652

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S+I ++  DM ++  M R++ GDVG GKT +A+ A   A++ G Q  ++ P  +L  QH 
Sbjct: 653  SSIDEVKADMEKQVPMDRLICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVSQHL 712

Query: 339  E-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            + F  +Y Q   + V+ ++        R+ L+ +A G   ++IGTH L    IQ+  L L
Sbjct: 713  QTFSDRYAQFP-VTVKALSRFQTDKEAREVLDGLARGTIDLVIGTHRLLAKDIQFKDLGL 771

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            V+VDE+ RFGV+ +  L    TA  VL M+ATPIPRTL +   G  ++S +   P  R P
Sbjct: 772  VVVDEEQRFGVEHKELLKTMRTAVDVLSMSATPIPRTLEMAVTGIREMSTLATPPEERHP 831

Query: 458  IKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEH 513
            + T +   +  +I   I R   +L EG + ++I  ++   EK     R +V         
Sbjct: 832  VLTFVGGYDEKQITAAIRR--ELLREG-QVFFIHNKVSSIEKAALRLRELVPE------- 881

Query: 514  FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              + I   HG+M +   E V++ F      +L+ TT++E G+D+ +A+ +I+E A+  GL
Sbjct: 882  --ARITTAHGKMGEHRLEQVVEDFWQKRSDVLVCTTIVETGLDISNANTLIVERADLLGL 939

Query: 574  AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
            +QLHQLRGRVGRG E +    LY P  PL++ ++ RL  + +  D   G  +A +DL+ R
Sbjct: 940  SQLHQLRGRVGRGRERAYAYFLYPPEKPLTETAHDRLRTIASHTDLGSGMDVAMKDLEIR 999

Query: 629  KEGEILGIKQSG 640
              G +LG +QSG
Sbjct: 1000 GAGNLLGGEQSG 1011


>gi|307720513|ref|YP_003891653.1| transcription-repair coupling factor [Sulfurimonas autotrophica DSM
           16294]
 gi|306978606|gb|ADN08641.1| transcription-repair coupling factor [Sulfurimonas autotrophica DSM
           16294]
          Length = 997

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 121/384 (31%), Positives = 210/384 (54%), Gaps = 27/384 (7%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T+ Q  A+ +IL  MS  + M R+L GDVG GKT +AL  + AA ++G Q+  + P 
Sbjct: 480 FEYTEDQTQAVNEILNQMSSGHIMDRLLSGDVGFGKTEIALNTIYAACQSGYQSAFIVPT 539

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L+ QH+  + +  ++  I    +   +    +   ++ +A G+   ++GTH LF   +
Sbjct: 540 TLLSAQHWRSLDERFKDLGIRYAKMDRFVSTKDKNAIIKGLASGEIDCVVGTHTLF--GL 597

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKI 448
           ++ KL +VI+DE+H+FGV+Q+ K+ +     H+L M+ATPIPR+L   L+S+  +  S++
Sbjct: 598 EFKKLGVVIIDEEHKFGVKQKEKIKELYHNVHLLSMSATPIPRSLNQALSSIKTM--SQL 655

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEK--KESNFRSVV 504
              P+ R+ ++T +   +   I EVI R    L  G + +++   I+    K    ++++
Sbjct: 656 LTPPSERQGVRTFVKEYDEKLIKEVILR---ELRRGGQVFYVHNSIDHMPIKLDELQALL 712

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                L         ++H ++S ++ E  +  F+ G   L+IAT++IE GI +   + II
Sbjct: 713 PDLRML---------MLHSKISAVETEKELLKFEAGEYDLMIATSIIESGIHMPRVNTII 763

Query: 565 IENAEHFGLAQLHQLRGRVGRG--EEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFL 619
           ++ A+ FG+A LHQLRGRVGRG  E  +  I+     L+  +  RL  L++      G +
Sbjct: 764 VDGADRFGIADLHQLRGRVGRGHSEGFAYFIVQNKENLTDEAKKRLLALESNSFLGSGSV 823

Query: 620 IAEEDLKQRKEGEILGIKQSGMPK 643
           +A  DL+ R  G ++G  QSG  K
Sbjct: 824 LAHHDLEIRGGGNLVGDAQSGHIK 847


>gi|306823175|ref|ZP_07456551.1| transcription-repair coupling factor [Bifidobacterium dentium ATCC
           27679]
 gi|309801612|ref|ZP_07695733.1| transcription-repair coupling factor [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553807|gb|EFM41718.1| transcription-repair coupling factor [Bifidobacterium dentium ATCC
           27679]
 gi|308221744|gb|EFO78035.1| transcription-repair coupling factor [Bifidobacterium dentium
           JCVIHMP022]
          Length = 1173

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/384 (32%), Positives = 208/384 (54%), Gaps = 14/384 (3%)

Query: 263 QKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           QK L +  P+  T  Q + I ++  DM +   M R++ GDVG GKT +A+ A   AV+  
Sbjct: 613 QKELEDAFPYQETADQLTTIDEVKSDMERSVPMDRLICGDVGFGKTEIAVRAAFKAVQDS 672

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++ P  +L QQH+E   +  +   + V  ++           +  +  G   ++IG
Sbjct: 673 KQVAVLVPTTLLVQQHFETFTERYEGFPVNVAAMSRFQTAKEINDTITGLEDGTVDVVIG 732

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH L    I++  L LVI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G
Sbjct: 733 THKLLNPKIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTG 792

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             ++S +   P  R P+ T +       ++   ++  L  G + +++  +++     +  
Sbjct: 793 IREMSTLATPPEDRLPVLTYVGAYEDA-QITAAVRRELLRGGQVFYVHNRVQ-----DIA 846

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           SV  + + L     + + I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A+
Sbjct: 847 SVAAKIHELVPE--AHVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNAN 904

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL-KNTE--D 616
            +I+++A+ FGL+QLHQLRGRVGRG E +    LY P  P+++ S+ RL+ + +NT    
Sbjct: 905 TLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPAKPMTQQSHDRLATIAQNTALGS 964

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG 640
           GF +A +DL+ R  G +LG +QSG
Sbjct: 965 GFDVAMKDLELRGTGNLLGDEQSG 988


>gi|323359428|ref|YP_004225824.1| transcription-repair coupling factor [Microbacterium testaceum
            StLB037]
 gi|323275799|dbj|BAJ75944.1| transcription-repair coupling factor [Microbacterium testaceum
            StLB037]
          Length = 1195

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 200/378 (52%), Gaps = 17/378 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF+ T+ Q   I +I  DM +   M R+L GDVG GKT VA+ A   A++ G Q  ++ P
Sbjct: 640  PFAETQDQLQTIDEIKADMEKPIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVP 699

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L +QH E   +      + V  ++        +  L  +  G   ++IGTH +  + 
Sbjct: 700  TTLLVKQHLETFAERFAGFPVTVRPLSRFQTDKEAKATLAGLTDGTVDMVIGTHRILTEK 759

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L L+I+DE+ RFGV+ + +L +  T   +L M+ATPIPRTL +   G  ++S + 
Sbjct: 760  VIFKDLGLMIIDEEQRFGVEHKDQLKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLA 819

Query: 450  EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
              P  R PI + + P N  +I   I R   +L EG+  Y         + S+ + V    
Sbjct: 820  TPPEDRHPILSYVGPRNDKQIAAAIRR--ELLREGQVFYV------HNRVSSIQRVAAHL 871

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              L     + I + HG+M +   E V+D F      +L++TT+IE G+D+ +A+ III+ 
Sbjct: 872  AELVPE--ARIVVAHGQMGEHALEQVVDDFWERRADVLVSTTIIETGLDISNANTIIIDR 929

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAE 622
            A+ +GL+QLHQLRGRVGRG + +    LY    PLS+ +  RL  +    D   G  +A 
Sbjct: 930  ADKYGLSQLHQLRGRVGRGRDRAYAYFLYDEMKPLSETAADRLETIAVNNDLGSGMQVAL 989

Query: 623  EDLKQRKEGEILGIKQSG 640
            +DL+ R  G +LG +Q+G
Sbjct: 990  KDLELRGAGNLLGAEQAG 1007


>gi|88856044|ref|ZP_01130705.1| transcription-repair coupling factor [marine actinobacterium
            PHSC20C1]
 gi|88814612|gb|EAR24473.1| transcription-repair coupling factor [marine actinobacterium
            PHSC20C1]
          Length = 1202

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 131/377 (34%), Positives = 200/377 (53%), Gaps = 17/377 (4%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F+ T  Q + I ++  DM     M R+L GDVG GKT VA+ A   AV+ G Q  ++ P 
Sbjct: 639  FAETPDQLTTIDEVKADMQSPVPMDRLLSGDVGYGKTEVAVRAAFKAVQDGKQVAMIVPT 698

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +L +QH E          + +  ++        R+ L  +  G   ++IGTH L   +I
Sbjct: 699  TLLVRQHMETFADRFAGFPVHLRALSRFQTDREARETLAGLTDGTVDVVIGTHRLLSKNI 758

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L LVI+DE+ RFGV+ +  L +  T   +L MTATPIPRTL +   G  ++S +  
Sbjct: 759  AFKDLGLVIIDEEQRFGVEHKDALKKLKTNVDILAMTATPIPRTLEMAVTGIREMSTLAT 818

Query: 451  KPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             P  R PI + + P +  ++   I R   +L EG+  Y         + S+   V  +  
Sbjct: 819  PPEDRHPILSFVGPYSERQVSAAIRR--ELLREGQIFYV------HNRVSSINRVAAKLA 870

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
             L     + IA+ HG++ +   E VM  F      +L++TT+IE G+D+ +A+ +II+ A
Sbjct: 871  ELVPD--ARIAVAHGQLPEAVLEQVMVDFWERKFDVLVSTTIIETGLDIANANTLIIDRA 928

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRL-SVLKNTE--DGFLIAEE 623
            + +GL+QLHQLRGRVGRG E +    LY    PLS+ ++ RL ++  N E   G  IA +
Sbjct: 929  DKYGLSQLHQLRGRVGRGRERAYAYFLYDEEKPLSETAHERLDTIAANNELGAGMQIALK 988

Query: 624  DLKQRKEGEILGIKQSG 640
            DL+ R  G +LG +QSG
Sbjct: 989  DLEIRGAGNLLGGEQSG 1005


>gi|332185437|ref|ZP_08387185.1| carD-like/TRCF domain protein [Sphingomonas sp. S17]
 gi|332014415|gb|EGI56472.1| carD-like/TRCF domain protein [Sphingomonas sp. S17]
          Length = 1063

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 142/413 (34%), Positives = 209/413 (50%), Gaps = 28/413 (6%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++     PFS T  Q +AI+ +  D++    M R++ GDVG GKT VAL A A A  +G 
Sbjct: 530 ERFAAGFPFSETPDQRAAIEAVRSDLASGRPMDRLVIGDVGYGKTEVALRAAAIAALSGK 589

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  I AP  +LA+QH +   +   +T I V  ++     A  R+    +  G   I+IGT
Sbjct: 590 QVAIAAPTTVLARQHLDSFTQRFADTGIAVAGLSRLSTAAEARRVKAGLKDGSIQIVIGT 649

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            A+    + Y  L LVIVDE+ RFG   + KL Q  +A HVL ++ATPIPRTL    +G 
Sbjct: 650 GAVAGKGVAYADLALVIVDEEQRFGAADKAKL-QALSAGHVLSLSATPIPRTLQAALVGL 708

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIEEKK-- 496
             +S I   PA R+PI+T +          E L+  L    S G +++ + P+I +    
Sbjct: 709 RQLSVIATPPARRQPIRTAVSAF-----APEMLRAALLRERSRGGQSFVVVPRIADMAPL 763

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +    +V     L           HG+M   + +  M  F  G   +L+AT +IE G+D
Sbjct: 764 AAQLAELVPELELLQ---------AHGKMPAAEIDEAMVRFGRGDGDVLLATNIIEAGLD 814

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT 614
           V  A+ + I +A+ FGLAQLHQLRGRVGRG      +L       ++  +  RL  L+  
Sbjct: 815 VPRANTMAIVHADRFGLAQLHQLRGRVGRGHRRGQVLLFTKGEDAIAPRTLKRLRTLEAF 874

Query: 615 E---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           +    GF I+  DL  R  G++LG  Q+G  + +    EL+  LLE A + A+
Sbjct: 875 DRLGAGFAISGRDLDMRGAGDLLGQTQAGHMRLIGV--ELYQQLLEGALRTAR 925


>gi|313681651|ref|YP_004059389.1| transcription-repair coupling factor [Sulfuricurvum kujiense DSM
           16994]
 gi|313154511|gb|ADR33189.1| transcription-repair coupling factor [Sulfuricurvum kujiense DSM
           16994]
          Length = 995

 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 206/381 (54%), Gaps = 27/381 (7%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q SAI  I++D+S  + M R+L GDVG GKT VA+ A+ AA + G Q++++ P 
Sbjct: 478 FDYTPDQSSAISSIVRDLSSGHIMDRLLSGDVGFGKTEVAMNAIFAAAKGGYQSLLVVPT 537

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L+ QH++ +K       + V  +   +    +   L  +  G+   ++GTHALF  S 
Sbjct: 538 TLLSSQHFQSLKTRLAPFGLRVAKLDRFVSTKEKNATLRALEAGELDCVVGTHALFGVSC 597

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKI 448
           +  KL +VI+DE+H+FGV+Q+ KL       H+L M+ATPIPR+L   L+S+  +  S++
Sbjct: 598 K--KLGIVIIDEEHKFGVKQKEKLKSLYENVHLLSMSATPIPRSLNQALSSIKTM--SEL 653

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEK--KESNFRSVV 504
              P+ R  ++T +   +   I EVI R    L  G + +++   I+    K    ++++
Sbjct: 654 LTPPSERLGVRTFVKNYDEKLIKEVILR---ELRRGGQVFYVHNSIDSMIIKSGELKAIL 710

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                        I I+H ++S    E  +  F N    +L+AT++IE GI +   + +I
Sbjct: 711 PDLR---------ILILHSQISANQTEEELAKFANREYDVLLATSIIESGIHMPTVNTMI 761

Query: 565 IENAEHFGLAQLHQLRGRVGRG--EEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFL 619
           I+ A+ FG+A LHQLRGRVGRG  E  +  I+     L++ +  RL  L++      G +
Sbjct: 762 IDGADRFGMADLHQLRGRVGRGHIEGYAYFIVDDKENLTEEAKKRLVALESNSFLGSGSM 821

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  G ++G  QSG
Sbjct: 822 LAYHDLEIRGGGNLVGDAQSG 842


>gi|289679715|ref|ZP_06500605.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           syringae FF5]
          Length = 467

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/281 (39%), Positives = 162/281 (57%), Gaps = 17/281 (6%)

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
           A+  +A G+  I+IGTH L QD ++   L LVI+DE+HRFGV+Q+ +L    +   +L +
Sbjct: 15  AVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTL 74

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL +   G  D+S I   PA R  ++T ++  N+   + E L   L  G + Y
Sbjct: 75  TATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVY 133

Query: 487 WICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           ++   ++  EK  ++   +V           + I I HG+M + + E VM  F +    +
Sbjct: 134 YLHNDVKTIEKCAADLAELVPE---------ARIGIGHGQMRERELEQVMSDFYHKRFNV 184

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSK 602
           LIA+T+IE GIDV  A+ IIIE A+  GLAQLHQLRGRVGR    +   LL  P   ++ 
Sbjct: 185 LIASTIIETGIDVPSANTIIIERADKVGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITH 244

Query: 603 NSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           ++  RL  + NT+D   GF++A  DL+ R  GE+LG  QSG
Sbjct: 245 DAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQSG 285


>gi|190150659|ref|YP_001969184.1| transcription-repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189915790|gb|ACE62042.1| transcription-repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 445

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/278 (39%), Positives = 162/278 (58%), Gaps = 19/278 (6%)

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           +A G+  I++GTH L Q+ +Q+  L L+I+DE+HRFGV+Q+ K+ Q      +L +TATP
Sbjct: 1   MAEGKVDILVGTHKLLQEDVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATP 60

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYW 487
           IPRTL +   G  D+S I   PA R  IKT    + + D++I + + +L E   G + Y+
Sbjct: 61  IPRTLNMALNGMRDLSVIASPPARRLTIKTF---VRQHDDLIVK-EAILREILRGGQVYY 116

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +   +     +   +   +   L     + I I HG+M + + E VM  F +    LL+ 
Sbjct: 117 LHNDV-----ATIENCATKLAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVC 169

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605
           +T+IE GIDV  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL  PP  L+K++ 
Sbjct: 170 STIIETGIDVPTANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQ 229

Query: 606 TRL---SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
            RL   S + N   GF++A  DL+ R  GE+LG +QSG
Sbjct: 230 QRLEAISSIDNLGAGFVLATHDLEIRGAGELLGAEQSG 267


>gi|320093934|ref|ZP_08025768.1| DNA helicase RecG [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979133|gb|EFW10642.1| DNA helicase RecG [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 251

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/232 (41%), Positives = 142/232 (61%), Gaps = 8/232 (3%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF+ T SQ +AI  I  D+++ + M R+LQGDVGSGKT+VAL A+A  V+ G Q  ++A
Sbjct: 10  LPFALTGSQRAAIGAIDADLARPSPMQRLLQGDVGSGKTVVALAALARVVDNGRQGALVA 69

Query: 329 PIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           P  +LA+QH+  I          + V ++TG+ P+A RR  LE +A     I++GTHAL 
Sbjct: 70  PTEVLAEQHFASITALLGPLGGAVGVRLLTGSTPEAARRAVLEEMASPGPLIVVGTHALL 129

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP---HVLLMTATPIPRTLVLTSLGDI 443
           QDS+ +  L L ++DEQHRFGV QR  L          H L+MTATPIPRT+ +T  GD+
Sbjct: 130 QDSVGFADLALAVIDEQHRFGVAQRAALRAARADGRLVHELVMTATPIPRTIAMTVFGDL 189

Query: 444 DISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQI 492
           D +++   PAGR P+ T ++  +    I+ +  R +  +  G + Y +CP+I
Sbjct: 190 DETRMEGLPAGRAPVATHLVDASNGPWIERLWRRAREEVDSGGRVYVVCPRI 241


>gi|163841705|ref|YP_001626109.1| transcription-repair coupling factor [Renibacterium salmoninarum ATCC
            33209]
 gi|162955181|gb|ABY24696.1| transcription-repair coupling factor [Renibacterium salmoninarum ATCC
            33209]
          Length = 1278

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 130/429 (30%), Positives = 220/429 (51%), Gaps = 19/429 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W S   +     + +AG++  L   +   +  G   + +    +++    P+  T  Q 
Sbjct: 678  DWASTKNKARKAVKEIAGELIRLYSARMASR--GFSFSADTPWQRELEEAFPYVETPDQL 735

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM ++  M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LAQQHY
Sbjct: 736  TTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHY 795

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +      + V+ ++        ++  E +A+G   ++IGTH L      +  L LV
Sbjct: 796  ETFSERFSGFPVRVKPLSRFQSGKEAKETAEGVANGSIDVVIGTHRLLSKDFAFKDLGLV 855

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL ++  G  + S +   P  R P+
Sbjct: 856  IVDEEQRFGVEHKEQLKKMRNNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPV 915

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--S 516
             T + P           + ++ EG + +++          N  S +ER  +  +     +
Sbjct: 916  LTYVGPYTDKQASAAIRRELMREG-QVFFV---------HNRVSSIERIAAHVQQLVPEA 965

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             IA+ HG+MS+   E ++  F      +L+ TT+IE G+D+ +A+ +I++ A+ +GL+QL
Sbjct: 966  RIAVAHGQMSESRLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDGADKYGLSQL 1025

Query: 577  HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGRG E +    LY    PL + +  RL  +    +   G  +A +DL+ R  G
Sbjct: 1026 HQLRGRVGRGRERAYAYFLYPAEKPLGEVALERLKAVAAHNELGAGMQLALKDLEIRGAG 1085

Query: 632  EILGIKQSG 640
             +LG +QSG
Sbjct: 1086 NLLGGEQSG 1094


>gi|317506800|ref|ZP_07964575.1| transcription-repair coupling factor [Segniliparus rugosus ATCC
            BAA-974]
 gi|316254911|gb|EFV14206.1| transcription-repair coupling factor [Segniliparus rugosus ATCC
            BAA-974]
          Length = 1155

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 130/429 (30%), Positives = 226/429 (52%), Gaps = 19/429 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W++  R+       +AGQ+  L   +Q  K  G     +     ++      +PT  Q 
Sbjct: 604  DWSNTKRQARKAVREIAGQLVQLYAARQTAK--GHAFGPDSPWQAELEGAFAHAPTPDQL 661

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM ++  M R++ GDVG GKT +A+ A   AV+ G Q V+++P  +L+ QH 
Sbjct: 662  TTIAEVKADMEREVPMDRVVCGDVGFGKTEIAVRAAFKAVQDGKQVVVLSPTTLLSDQHL 721

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V+ ++     A  ++ L  +A G+  +++GTH + Q  +++  L LV
Sbjct: 722  RTFSERMAPFPVKVKGLSRFTDPAEAKETLAGVAEGEVDVLVGTHRVLQSKVRFKDLGLV 781

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +        VL ++ATPIPRTL ++  G  D+S I   P  R P+
Sbjct: 782  IVDEEQRFGVEHKEHIKALRVNVDVLTLSATPIPRTLEMSLTGIRDMSTILTPPEERFPV 841

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
             T +   +   +V   L+  L    + ++I  ++   EK  +  + +V           +
Sbjct: 842  LTYVGAHDE-KQVAAALRRELVRDGQVFYIHNRVSSIEKTAARLKELVPE---------A 891

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             +A+ HG+M +   E+  ++F  G   +L+ TT++E G+D+ +A+ +I+E A+  GL+QL
Sbjct: 892  RVAVAHGQMGEEALEATAEAFWRGEHDILVCTTIVESGLDIANANTLIVERADTLGLSQL 951

Query: 577  HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL---KNTEDGFLIAEEDLKQRKEG 631
            HQLRGRVGRG E +    LY P   LS+ ++ RL+ +    +   G  +A  DL+ R  G
Sbjct: 952  HQLRGRVGRGGERAFAYFLYDPERSLSETAHERLATIAQHSSLGSGMAVAMRDLEIRGAG 1011

Query: 632  EILGIKQSG 640
             +LG++QSG
Sbjct: 1012 NVLGLEQSG 1020


>gi|290243095|ref|YP_003494765.1| helicase domain protein [Thioalkalivibrio sp. K90mix]
 gi|288945600|gb|ADC73298.1| helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 653

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/391 (30%), Positives = 195/391 (49%), Gaps = 27/391 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF+ T+ QE+A++ I Q M+       +L GDVG+GKT+V  +  AA  +AG  A +M
Sbjct: 255 DVPFTMTEEQEAAVEAITQQMNTMEPQRHLLSGDVGTGKTVVFGLVAAATYDAGYSAAVM 314

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH-----IIIGT 382
            P   LAQQ    + +   +   +               A + + H QA      I +GT
Sbjct: 315 LPNEPLAQQVARELGEMWPDISFVT-------------VAGDSVPHPQAGVDDPVIFVGT 361

Query: 383 HALFQ--DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            AL    +     ++ LV+VDEQ ++ V QR +L Q     H+L  TAT IPRT+ L   
Sbjct: 362 TALLSRINEDARPRIGLVVVDEQQKYSVAQREQLAQDGA--HLLEATATCIPRTMALIRY 419

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           G + +S++   P   K I T ++P      V  +++  L +G +   + P ++E   ++ 
Sbjct: 420 GAMQLSQL-RTPHTPKEITTQVVPGAESKRVFSQIQKTLEKGHQVLVVYP-LKEGDPNDR 477

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            ++        + +   +A I G M D +KE  +   ++G   +LI TTV+EVG++    
Sbjct: 478 MALSNAIEFWKKRYGDRVAAISGSMEDTEKEQALARLRSGAADILIGTTVVEVGLNAPGL 537

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
             I+I +A  +GL QLHQLRGRV R      C L+      + +  R  VL++T+DGF +
Sbjct: 538 RHIVIADASRYGLMQLHQLRGRVARQGGKGLCSLIVPDNAKERTLERFRVLESTQDGFEV 597

Query: 621 AEEDLKQRKEGEI---LGIKQSGMPKFLIAQ 648
           AE D++ R  G++    G +  G   FL  +
Sbjct: 598 AEHDMRLRGFGDLGADGGTQHGGDETFLFGK 628


>gi|309812806|ref|ZP_07706544.1| transcription-repair coupling factor [Dermacoccus sp. Ellin185]
 gi|308433223|gb|EFP57117.1| transcription-repair coupling factor [Dermacoccus sp. Ellin185]
          Length = 1209

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/374 (32%), Positives = 202/374 (54%), Gaps = 17/374 (4%)

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q S+I+++  DM +   M R++ GDVG GKT +A+ A   AV+   Q  ++ P  +L
Sbjct: 645  TPDQLSSIEEVKADMEKTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDSKQVAVLVPTTLL 704

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             +QHY+   +      + +  ++        R+ L  +  G   ++IGTH L    I++ 
Sbjct: 705  VKQHYQTFAERYAGFPVKLASLSRFQSDKEAREVLAGLKDGSIDLVIGTHRLLSKEIEFK 764

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L LVIVDE+ RFGV+ + +L Q  TA  VL M+ATPIPRTL +   G  ++S +   P 
Sbjct: 765  DLGLVIVDEEQRFGVEHKEQLKQMRTAVDVLAMSATPIPRTLEMAVTGIREMSTLATPPE 824

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLH 511
             R P+ T +   +         + ++ EG + +++  ++   EK+ +  R +V       
Sbjct: 825  ERHPVLTFVGAYDEKQLTAAIRRELMREG-QVFYVHNKVGSIEKQAARIRELVPE----- 878

Query: 512  EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                + +A  HG+M +   E V+  F      +L++TT++E G+D+ +A+ +I+E A+  
Sbjct: 879  ----ARVATAHGKMGEARLEEVVVDFWERKFDVLVSTTIVETGLDIANANTLIVERADQL 934

Query: 572  GLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GL+QLHQLRGRVGRG E +    ++    PL++ ++ RL  + +  D   G  IA +DL+
Sbjct: 935  GLSQLHQLRGRVGRGRERAYAYFMFPAEKPLTETAHDRLQTIASNTDLGAGMQIAMKDLE 994

Query: 627  QRKEGEILGIKQSG 640
             R  G +LG +QSG
Sbjct: 995  IRGAGNLLGGEQSG 1008


>gi|294790717|ref|ZP_06755875.1| transcription-repair coupling factor [Scardovia inopinata F0304]
 gi|294458614|gb|EFG26967.1| transcription-repair coupling factor [Scardovia inopinata F0304]
          Length = 1227

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 206/376 (54%), Gaps = 13/376 (3%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q + I ++  DM +   M R++ GDVG GKT +A+ A   A++   Q  ++ P
Sbjct: 664  PYQETPDQLTTIDEVKADMEKPIPMDRLICGDVGFGKTEIAVRAAFKAIQDSKQVAVLVP 723

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHYE   +  +   + +++++     A   + ++ ++ G   ++IGTH L    
Sbjct: 724  TTLLAQQHYETFSERFEGFPVTIKMMSRFQTVAENAQTVKELSEGTVDLVIGTHKLLNPK 783

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I +  L LVI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S + 
Sbjct: 784  ITFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLA 843

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R P+ T +       +V   ++  L  G + +++  +++     +   V    + 
Sbjct: 844  TPPEDRLPVLTYVGAYEDA-QVTAAIRRELLRGGQVFYVHNRVQ-----DISKVAAHIHD 897

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            L     + I   HG+M +   ++V+  F +    +L+ TT++E G+D+ +A+ ++++ A+
Sbjct: 898  LVPE--ARIGTAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIVETGLDISNANTLVVDRAD 955

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL-SVLKNTE--DGFLIAEED 624
             FGL+QLHQLRGRVGRG E +    LY P   +++ ++ RL ++ +NT    G+ +A +D
Sbjct: 956  RFGLSQLHQLRGRVGRGRERAYAYFLYDPSKTMTQTAHDRLETIAQNTALGSGYDVAMKD 1015

Query: 625  LKQRKEGEILGIKQSG 640
            L+ R  G +LG +QSG
Sbjct: 1016 LEIRGTGNLLGDEQSG 1031


>gi|325962661|ref|YP_004240567.1| transcription-repair coupling factor Mfd [Arthrobacter
            phenanthrenivorans Sphe3]
 gi|323468748|gb|ADX72433.1| transcription-repair coupling factor Mfd [Arthrobacter
            phenanthrenivorans Sphe3]
          Length = 1221

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/378 (32%), Positives = 201/378 (53%), Gaps = 17/378 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q + I ++  DM ++  M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 668  PYVETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 727

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHYE   +      + V+ ++        ++  E + +G   ++IGTH L    
Sbjct: 728  TTLLAQQHYETFTERFSGFPLRVKPLSRFQASKEAKETAEGVKNGTVDVVIGTHRLLSKD 787

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
             ++  L LVIVDE+ RFGV+ +  L +  T   VL M+ATPIPRTL ++  G  + S + 
Sbjct: 788  FEFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLA 847

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
              P  R P+ T + P           + ++ EG + +++  ++   E+  +  R +V   
Sbjct: 848  TPPEERHPVLTYVGPYTDKQTSAAIRRELMREG-QVFFVHNRVSTIERTAAKIRELVPE- 905

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                    + + + HG+MS+   E ++  F      +L+ TT+IE G+D+ +A+ +I++ 
Sbjct: 906  --------ARVEVAHGKMSESRLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDG 957

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
            A+ +GL+QLHQLRGRVGRG E +    LY    PL + +  RL  +    +   G  +A 
Sbjct: 958  ADKYGLSQLHQLRGRVGRGRERAYAYFLYPSEKPLGEVALERLKAVATHNELGAGMQLAM 1017

Query: 623  EDLKQRKEGEILGIKQSG 640
            +DL+ R  G +LG +QSG
Sbjct: 1018 KDLEIRGAGNLLGGEQSG 1035


>gi|184201352|ref|YP_001855559.1| transcription-repair coupling factor [Kocuria rhizophila DC2201]
 gi|183581582|dbj|BAG30053.1| transcription-repair coupling factor [Kocuria rhizophila DC2201]
          Length = 1254

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 205/378 (54%), Gaps = 17/378 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q + I ++  DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P
Sbjct: 691  PYIETPDQLTTIDEVKADMERPIPMDRLISGDVGYGKTEVAVRAAFKAVQDGKQVAVLVP 750

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQH E   +      + +  ++        +  +E +  G   ++IGTH L    
Sbjct: 751  TTLLAQQHSETFAERFSGFPVRLATLSRFQTAKESKATMEGLRSGAVDVVIGTHRLLSKE 810

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +Q+  L LVI+DE+ RFGV+ + KL    T   VL M+ATPIPRTL ++  G  + S + 
Sbjct: 811  MQFKNLGLVIIDEEQRFGVEHKEKLKAMRTDVDVLAMSATPIPRTLEMSMTGIRETSTLA 870

Query: 450  EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
              P  R P+ T + P    ++   I R   ++ EG+  ++I  ++    E+  + + E  
Sbjct: 871  TPPEERHPVLTYVGPYTNKQVSAAIRR--ELMREGQ-VFFIHNRVS-TIEAQAKELAELV 926

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                    + IA+ HG+M++   E ++  F      +L+ TT++E G+D+ +A+ +I+++
Sbjct: 927  PE------ARIAVAHGQMTESRLEQIIVDFWEKKFDVLVCTTIVETGLDIANANTLIVDH 980

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRL-SVLKNTE--DGFLIAE 622
            A+ +GL+QLHQLRGRVGRG E +    LY    PLS+ +  RL +V  + E   G  +A 
Sbjct: 981  ADRYGLSQLHQLRGRVGRGRERAYAYFLYPAEKPLSETALERLKAVAAHNELGSGMQLAM 1040

Query: 623  EDLKQRKEGEILGIKQSG 640
            +DL+ R  G +LG +QSG
Sbjct: 1041 KDLEIRGAGNLLGGEQSG 1058


>gi|119960591|ref|YP_947136.1| transcription-repair coupling factor [Arthrobacter aurescens TC1]
 gi|119947450|gb|ABM06361.1| transcription-repair coupling factor [Arthrobacter aurescens TC1]
          Length = 1210

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 200/378 (52%), Gaps = 17/378 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q + I ++  DM ++  M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 657  PYVETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 716

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHYE   +      + V+ ++        ++  E +  G   ++IGTH L    
Sbjct: 717  TTLLAQQHYETFTERFSGFPLRVKPLSRFQSSKEAKETAEGVKSGAVDVVIGTHRLLSKD 776

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
             Q+  L LVIVDE+ RFGV+ +  L +  T   VL M+ATPIPRTL ++  G  + S + 
Sbjct: 777  FQFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLA 836

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
              P  R P+ T + P           + ++ EG + +++  ++   E+  +  R +V   
Sbjct: 837  TPPEERHPVLTYVGPYTNKQTSAAIRRELMREG-QVFFVHNRVSSIERIAAQIRELVPE- 894

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                    + + + HG+MS+   E ++  F      +L+ TT+IE G+D+ +A+ +I++ 
Sbjct: 895  --------ARVEVAHGQMSESRLEKIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDG 946

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
            A+ +GL+QLHQLRGRVGRG E +    LY    PL + +  RL  +    +   G  +A 
Sbjct: 947  ADKYGLSQLHQLRGRVGRGRERAYAYFLYPSEKPLGEVALERLKAVAAHNELGAGMQLAM 1006

Query: 623  EDLKQRKEGEILGIKQSG 640
            +DL+ R  G +LG +QSG
Sbjct: 1007 KDLEIRGAGNLLGGEQSG 1024


>gi|124262929|ref|YP_001023399.1| RecG-like helicase [Methylibium petroleiphilum PM1]
 gi|124262175|gb|ABM97164.1| RecG-like helicase [Methylibium petroleiphilum PM1]
          Length = 636

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/447 (29%), Positives = 218/447 (48%), Gaps = 39/447 (8%)

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK---EIGIPINVEGKIAQKI 265
           +H P+  ++ E  +     L+   +L G+ A    R Q      E  +PI+      Q +
Sbjct: 195 LHTPKSTREGEMAAKVATELSLAAIL-GRAA----RNQSAAPVTESALPIDR--AAIQAL 247

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
              +PFS T  Q  AI +++ D+     M R+L GDVG+GK++V ++   AA  AG +  
Sbjct: 248 CARLPFSLTGDQAKAIDEVVGDLRAPFPMRRLLSGDVGTGKSIVFMVPAVAAFNAGARVA 307

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ---AHIIIGT 382
           I+ P                   Q++VE I G +   +    ++ +  G    + +++GT
Sbjct: 308 IVVP------------------NQLLVEQIAGELRAYYPEIPVQEVTSGAQIGSSLVVGT 349

Query: 383 HALFQDSIQY-YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            A+   + ++  +  LVIVDEQH+F V+Q+  L    T  + L  TAT IPRTL L   G
Sbjct: 350 SAVIHAARKHKLEFDLVIVDEQHKFSVEQKDALRVART--NFLEATATAIPRTLALVGFG 407

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
            + +S + E P  +K I T I+       + + +   ++ G +   I P  E+  +    
Sbjct: 408 GMAVSVLRELPVVKK-IATRIVEKADGARLFDFVHAQIAAGGQVAVIYPLAEDMGDGERA 466

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           SV   F      +     ++HG++SD +K +V++  ++G   LL+++TVIEVG+ +    
Sbjct: 467 SVEAAFERFKARYGDRAGMLHGKLSDDEKAAVINKMRDGELSLLVSSTVIEVGVTLPSLR 526

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLI 620
            +++ + E FG++QLHQLRGRV R +  S    LY P  +   +  RL +L    DGF +
Sbjct: 527 ALVVVHPERFGVSQLHQLRGRVAR-KGGSGYFFLYLPAEVEDMAMQRLELLVECSDGFTL 585

Query: 621 AEEDLKQRKEGEI--LGIKQSGMPKFL 645
           AE D   R  G +   G  Q+G  + L
Sbjct: 586 AERDADLRGFGNVDAGGDAQTGSSRLL 612


>gi|58616181|ref|YP_195310.1| ATP-dependent DNA helicase [Azoarcus sp. EbN1]
 gi|56315642|emb|CAI10286.1| ATP-dependent DNA helicase [Aromatoleum aromaticum EbN1]
          Length = 513

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 136/424 (32%), Positives = 221/424 (52%), Gaps = 52/424 (12%)

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           IPI  E ++A K+L  +P++ TK Q+ AI++I  D+  K  M R+L GDVG+GKTLV LI
Sbjct: 103 IPIQDE-EVA-KLLSALPYTLTKDQQIAIQEITADLRSKRPMNRLLAGDVGTGKTLVFLI 160

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-VEIITGNMPQAHRRKALERI 371
            + AA  AG +  +M    +L +Q    + +Y  +     V+  T ++P A         
Sbjct: 161 PLVAAHLAGARVAVMTANQLLVEQALRELAEYFPDVPTFQVKPGTKDLPNA--------- 211

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
                 I+IGT ++   ++   K  L  V+ DEQH+F V Q+  L  + T  ++L  TAT
Sbjct: 212 ------ILIGTTSVI-GALARVKGTLDFVVTDEQHKFAVSQKQSLMDEHT--NLLEATAT 262

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            IPRTL +   G +D+S + E P  +K I + I+  +  D +++ +K V + G++   + 
Sbjct: 263 AIPRTLAVVQFGGMDVSLLRECPV-QKDIASRIVLSHEKDRLLDFIKKVAAAGRQTAIVY 321

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +    E   +S+ +      +HF   +AI HG+M   +K+  +   ++    +L+++T
Sbjct: 322 AAVNAGSEG--KSIEDNAAKWLKHFPDQVAIAHGQMPAEEKQEALRQMRDKEKLILVSST 379

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV----GRGEEISSCILLYHP-PLSKN- 603
           VIEVGI +   + +I+ NAE FG+AQLHQLRGRV    GRG        LY P P++ + 
Sbjct: 380 VIEVGITLPSLACLIVVNAERFGVAQLHQLRGRVSRHGGRG-----YFFLYLPQPVTDDE 434

Query: 604 -------------SYTRLSVLKNTEDGFLIAEEDLKQRKEGEI--LGIKQSGMPKFLIAQ 648
                        +  RL +L +  +GF +AE+D + R  G++   G  Q G   FL   
Sbjct: 435 DDDAAYGKTAADRTMKRLQLLVDHSNGFDLAEKDAELRGLGDLSSTGSSQHGKTAFLFPN 494

Query: 649 PELH 652
            ++H
Sbjct: 495 LKIH 498


>gi|227497779|ref|ZP_03927965.1| transcription-repair coupling factor [Actinomyces urogenitalis DSM
            15434]
 gi|226832806|gb|EEH65189.1| transcription-repair coupling factor [Actinomyces urogenitalis DSM
            15434]
          Length = 1250

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/380 (32%), Positives = 202/380 (53%), Gaps = 17/380 (4%)

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + P++ T  Q + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++
Sbjct: 672  SFPYTETADQLATIDEVKSDMEKAQPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVL 731

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +L  QH E   +      + V  ++     +   + L+ +A G   ++IGTH L  
Sbjct: 732  VPTTLLVSQHAETFTERYAGFPVRVAQLSRFQSASQSEEVLKGLASGAIDVVIGTHRLIT 791

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              +++  L LVI+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S 
Sbjct: 792  GQVRFKDLGLVIIDEEQRFGVEHKETLKALRTDVDVLSMSATPIPRTLEMAVTGLREMST 851

Query: 448  ITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            +   P  R PI T +      ++   I R   +L +G + +++  ++E     +   V  
Sbjct: 852  LATPPEDRHPILTYVGAYETKQVSAAIRR--ELLRDG-QVFYVHNRVE-----DIDRVAA 903

Query: 506  RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            R   +     + +A  HG+M ++  E V+D F +    +L+ TT++E G+DV +A+ +I+
Sbjct: 904  RIQEMVPE--ARVATAHGQMGEVRLEQVIDDFWHKEIDVLVCTTIVETGLDVSNANTLIV 961

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLI 620
            + A+  GL+QLHQLRGRVGRG E +    LY    PL++ +  RL  +    D   G  +
Sbjct: 962  DRADRMGLSQLHQLRGRVGRGRERAYAYFLYPADKPLTETALERLRTIATNTDLGAGMQV 1021

Query: 621  AEEDLKQRKEGEILGIKQSG 640
            A +DL+ R  G +LG +QSG
Sbjct: 1022 AMKDLEIRGAGNLLGGEQSG 1041


>gi|118474341|ref|YP_891912.1| transcription-repair coupling factor [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118413567|gb|ABK81987.1| transcription-repair coupling factor [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 985

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 132/423 (31%), Positives = 215/423 (50%), Gaps = 25/423 (5%)

Query: 225 RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
           RE+L    ++A +I  L  +++  +  GI +N + + A K   +  F  T  QE A+ DI
Sbjct: 431 REKLF---VIANKIIALAAKRELIE--GIRLNADSQYA-KFKSSAGFIYTDDQEKAVNDI 484

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
              +     M  +L GDVG GKT VA+ A+   V++G QA+   P  +L+ QH++ +K+ 
Sbjct: 485 QNHLKSGRVMDMLLSGDVGFGKTEVAMNAIFLCVKSGYQALFFVPTTLLSSQHFKSLKER 544

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                I V  +        +   ++ +   +  ++IGTH+L   S++   L L+I+DE+H
Sbjct: 545 FDKFNIDVRRLDRFTSTKEKSNIIKNLNDAKPMVVIGTHSLL--SLKAANLGLIIIDEEH 602

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           +FGV+Q+ KL + +   H+L M+ATPIPR+L +        S +   P  R  ++T +  
Sbjct: 603 KFGVKQKEKLKEISEHSHILSMSATPIPRSLNMALSKVKSYSTLLTPPLDRMDVRTFVKE 662

Query: 465 INR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
            +   I EVI R    +  G + +++   I     S+  S+     +L  +    +  +H
Sbjct: 663 WDEKLIKEVILR---EIRRGGQIFYVHNLI-----SDMPSMERELKALIPNL--KVLTLH 712

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
            ++     E  M  F N    LL+ T++IE GI + +A+ III++A  FG+A LHQLRGR
Sbjct: 713 SKIDAKTTEDEMMKFANKEYDLLLCTSIIESGIHLPNANTIIIDDANKFGIADLHQLRGR 772

Query: 583 VGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIK 637
           VGR  +   C  L      LS  +  RL  L++      G L+A  DL+ R  G +LG  
Sbjct: 773 VGRSNKQGYCYFLVGDKNELSSEAVKRLIALESNSFLGSGALLAYHDLEIRGGGNLLGEA 832

Query: 638 QSG 640
           QSG
Sbjct: 833 QSG 835


>gi|116669806|ref|YP_830739.1| transcription-repair coupling factor [Arthrobacter sp. FB24]
 gi|116609915|gb|ABK02639.1| transcription-repair coupling factor [Arthrobacter sp. FB24]
          Length = 1222

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 131/430 (30%), Positives = 221/430 (51%), Gaps = 21/430 (4%)

Query: 219  EWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W S  ++ R A  E+ AG++  L   +   K  G     +    +++    P+  T  Q
Sbjct: 620  DWASTKSKARKAVKEI-AGELIRLYSARMASK--GFAFGPDTPWQRELEEAFPYVETPDQ 676

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM ++  M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LAQQH
Sbjct: 677  LTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQH 736

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE   +      + V+ ++        ++  E + +G   ++IGTH L      +  L L
Sbjct: 737  YETFTERFSGFPLRVKPLSRFQASKEAKETAEGVKNGSVDVVIGTHRLLSKDFAFKDLGL 796

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VIVDE+ RFGV+ +  L +  T   VL M+ATPIPRTL ++  G  + S +   P  R P
Sbjct: 797  VIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHP 856

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
            + T + P           + ++ EG + +++  ++   E+  +  R +V           
Sbjct: 857  VLTYVGPYTDKQTSAAIRRELMREG-QVFFVHNRVSSIERTAAKIRELVPE--------- 906

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + + + HG+MS+   E ++  F      +L+ TT+IE G+D+ +A+ +I++ A+ +GL+Q
Sbjct: 907  ARVEVAHGQMSESRLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDGADKYGLSQ 966

Query: 576  LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
            LHQLRGRVGRG E +    LY    PL + +  RL  +    +   G  +A +DL+ R  
Sbjct: 967  LHQLRGRVGRGRERAYAYFLYPSEKPLGEVALERLKAVAAHNELGAGMQLAMKDLEIRGA 1026

Query: 631  GEILGIKQSG 640
            G +LG +QSG
Sbjct: 1027 GNLLGGEQSG 1036


>gi|295094785|emb|CBK83876.1| RecG-like helicase [Coprococcus sp. ART55/1]
          Length = 269

 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 101/248 (40%), Positives = 145/248 (58%), Gaps = 20/248 (8%)

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER------LKVVL 479
           M+ATPIPRTL +   GD+DIS I E PAGR PIK  ++     DE   +      +K VL
Sbjct: 1   MSATPIPRTLAIIMYGDLDISVIDELPAGRIPIKNCVV-----DESYRKTALGFIMKEVL 55

Query: 480 SEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHF------TSSIAIIHGRMSDIDKES 532
            +G + Y +CP +E  +   +  +V E    L +         +S+  +HG+M   +K  
Sbjct: 56  -QGHQIYIVCPMVEASEVLDDVANVTEYTEELKKSIRDGYGADTSVVCLHGKMKAEEKNR 114

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           ++  F +G   +L++TTVIEVGI+  +A+++++ENAE FGLAQLHQLRGRVGRG   S C
Sbjct: 115 ILQDFADGKISILVSTTVIEVGINNPNATVMMVENAERFGLAQLHQLRGRVGRGNLQSYC 174

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           I +      K++  RL+VL+ + DGF IA EDLK R  G+  GI+QSG   F +     H
Sbjct: 175 IFMSGKK-DKDTMERLNVLEKSNDGFYIAGEDLKMRGPGDFFGIRQSGELMFKVGDIYNH 233

Query: 653 DSLLEIAR 660
             +L  A+
Sbjct: 234 ADMLRAAQ 241


>gi|307701502|ref|ZP_07638520.1| transcription-repair coupling factor [Mobiluncus mulieris FB024-16]
 gi|307613294|gb|EFN92545.1| transcription-repair coupling factor [Mobiluncus mulieris FB024-16]
          Length = 1172

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 201/374 (53%), Gaps = 17/374 (4%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q + I ++  DM +   M R+L GDVG GKT +A+ A   AV+ G Q  ++AP  +L
Sbjct: 627 TPDQLTTIDEVKADMEKPVPMDRLLCGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLL 686

Query: 334 AQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
             QH E  +       I V  ++    + +A R KA   +A G+  +++GTHAL    ++
Sbjct: 687 VSQHLETFQNRFAAFPITVAALSRFTTVKEATRIKA--DLADGKIEVVVGTHALLSGKVR 744

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L LV++DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G   +S +T  
Sbjct: 745 FKDLGLVVIDEEQRFGVEHKEALKALRTNVDVLAMSATPIPRTLEMAITGIRGLSTLTTP 804

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R P+ T +   +         + +L +G+  +++  +++     +   V +   SL 
Sbjct: 805 PEERHPVLTYVGAYSDRQVAAAIRREMLRDGQ-VFYVHNRVQ-----DIARVAKHLQSLV 858

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               + I + HG+M +   E VM  F N    +L++TT++E G+DV +A+ III+ AE  
Sbjct: 859 PE--ARIRVGHGQMPETQLEQVMMDFWNQEFDVLVSTTIVENGLDVTNANTIIIDRAERM 916

Query: 572 GLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
           GL+QLHQLRGRVGRG E      LY     LS+ ++ RL  + +      G  IA++DL+
Sbjct: 917 GLSQLHQLRGRVGRGRERGYAYFLYPGGDTLSETAFERLKTIGSNTSLGAGMAIAQKDLE 976

Query: 627 QRKEGEILGIKQSG 640
            R  G +LG +QSG
Sbjct: 977 IRGAGNLLGGEQSG 990


>gi|269976100|ref|ZP_06183099.1| transcription-repair coupling factor [Mobiluncus mulieris 28-1]
 gi|269935693|gb|EEZ92228.1| transcription-repair coupling factor [Mobiluncus mulieris 28-1]
          Length = 1172

 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 201/374 (53%), Gaps = 17/374 (4%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q + I ++  DM +   M R+L GDVG GKT +A+ A   AV+ G Q  ++AP  +L
Sbjct: 627 TPDQLTTIDEVKADMEKPVPMDRLLCGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLL 686

Query: 334 AQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
             QH E  +       I V  ++    + +A R KA   +A G+  +++GTHAL    ++
Sbjct: 687 VSQHLETFQNRFAAFPITVAALSRFTTVKEATRIKA--DLADGKIEVVVGTHALLSGKVR 744

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L LV++DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G   +S +T  
Sbjct: 745 FKDLGLVVIDEEQRFGVEHKEALKALRTNVDVLAMSATPIPRTLEMAITGIRGLSTLTTP 804

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R P+ T +   +         + +L +G+  +++  +++     +   V +   SL 
Sbjct: 805 PEERHPVLTYVGAYSDRQVAAAIRREMLRDGQ-VFYVHNRVQ-----DIARVAKHLQSLV 858

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               + I + HG+M +   E VM  F N    +L++TT++E G+DV +A+ III+ AE  
Sbjct: 859 PE--ARIRVGHGQMPETQLEQVMMDFWNQEFDVLVSTTIVENGLDVTNANTIIIDRAERM 916

Query: 572 GLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
           GL+QLHQLRGRVGRG E      LY     LS+ ++ RL  + +      G  IA++DL+
Sbjct: 917 GLSQLHQLRGRVGRGRERGYAYFLYPGGDTLSETAFERLKTIGSNTSLGAGMAIAQKDLE 976

Query: 627 QRKEGEILGIKQSG 640
            R  G +LG +QSG
Sbjct: 977 IRGAGNLLGGEQSG 990


>gi|227876324|ref|ZP_03994437.1| possible transcription-repair coupling factor [Mobiluncus mulieris
           ATCC 35243]
 gi|306817215|ref|ZP_07450962.1| transcription-repair coupling factor [Mobiluncus mulieris ATCC
           35239]
 gi|227843097|gb|EEJ53293.1| possible transcription-repair coupling factor [Mobiluncus mulieris
           ATCC 35243]
 gi|304650017|gb|EFM47295.1| transcription-repair coupling factor [Mobiluncus mulieris ATCC
           35239]
          Length = 1172

 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 201/374 (53%), Gaps = 17/374 (4%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q + I ++  DM +   M R+L GDVG GKT +A+ A   AV+ G Q  ++AP  +L
Sbjct: 627 TPDQLTTIDEVKADMEKPVPMDRLLCGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLL 686

Query: 334 AQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
             QH E  +       I V  ++    + +A R KA   +A G+  +++GTHAL    ++
Sbjct: 687 VSQHLETFQNRFAAFPITVAALSRFTTVKEATRIKA--DLADGKIEVVVGTHALLSGKVR 744

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L LV++DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G   +S +T  
Sbjct: 745 FKDLGLVVIDEEQRFGVEHKEALKALRTNVDVLAMSATPIPRTLEMAITGIRGLSTLTTP 804

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R P+ T +   +         + +L +G+  +++  +++     +   V +   SL 
Sbjct: 805 PEERHPVLTYVGAYSDRQVAAAIRREMLRDGQ-VFYVHNRVQ-----DIARVAKHLQSLV 858

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               + I + HG+M +   E VM  F N    +L++TT++E G+DV +A+ III+ AE  
Sbjct: 859 PE--ARIRVGHGQMPETQLEQVMMDFWNQEFDVLVSTTIVENGLDVTNANTIIIDRAERM 916

Query: 572 GLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
           GL+QLHQLRGRVGRG E      LY     LS+ ++ RL  + +      G  IA++DL+
Sbjct: 917 GLSQLHQLRGRVGRGRERGYAYFLYPGGDTLSETAFERLKTIGSNTSLGAGMAIAQKDLE 976

Query: 627 QRKEGEILGIKQSG 640
            R  G +LG +QSG
Sbjct: 977 IRGAGNLLGGEQSG 990


>gi|332671526|ref|YP_004454534.1| transcription-repair coupling factor [Cellulomonas fimi ATCC 484]
 gi|332340564|gb|AEE47147.1| transcription-repair coupling factor [Cellulomonas fimi ATCC 484]
          Length = 1222

 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 201/374 (53%), Gaps = 17/374 (4%)

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L
Sbjct: 666  TPDQLATIDEVKADMEKSVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL 725

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             QQH +   +      + V+ ++        ++ +  +A G   I+IGTH L    +++ 
Sbjct: 726  VQQHLDTFSERYSAFPVTVKALSRFQSDKESKEVVAGLADGSVDIVIGTHRLITGEVRFK 785

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L LVI+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S +   P 
Sbjct: 786  DLGLVIIDEEQRFGVEHKETLKALRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPE 845

Query: 454  GRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
             R P+ T +   +  +I   + R   +L EG+  Y     +  K +S  R+   R + L 
Sbjct: 846  ERHPVLTFVGAYDEKQISAAVRR--ELLREGQVFY-----VHNKVDSIERA-ASRISELV 897

Query: 512  EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                + +A+ HG+M++   E V+  F      +L+ TT++E G+D+ +A+ +I+E A+  
Sbjct: 898  PE--ARVAVAHGKMNEHQLERVIVDFWEKRFDVLVCTTIVETGLDISNANTLILERADLL 955

Query: 572  GLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GL+QLHQLRGRVGRG E +    LY P  PL++ ++ RL  +    D   G  +A +DL+
Sbjct: 956  GLSQLHQLRGRVGRGRERAYAYFLYPPEKPLTETAHDRLQTIAANTDLGAGMAVAMKDLE 1015

Query: 627  QRKEGEILGIKQSG 640
             R  G +LG +QSG
Sbjct: 1016 IRGAGNLLGGEQSG 1029


>gi|220912069|ref|YP_002487378.1| transcription-repair coupling factor [Arthrobacter chlorophenolicus
            A6]
 gi|219858947|gb|ACL39289.1| transcription-repair coupling factor [Arthrobacter chlorophenolicus
            A6]
          Length = 1220

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/378 (32%), Positives = 199/378 (52%), Gaps = 17/378 (4%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q + I ++  DM ++  M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 667  PYVETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 726

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LAQQHYE   +      + V+ ++        ++  E +  G   ++IGTH L    
Sbjct: 727  TTLLAQQHYETFTERFSGFPLRVKPLSRFQSAKESKETAEGVKSGAVDVVIGTHRLLSKD 786

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
             ++  L LVIVDE+ RFGV+ +  L +  T   VL M+ATPIPRTL ++  G  + S + 
Sbjct: 787  FEFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLA 846

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERF 507
              P  R P+ T + P           + ++ EG + + +  ++   E+  +  R +V   
Sbjct: 847  TPPEERHPVLTYVGPYTDKQTSAAIRRELMREG-QVFLVHNRVSTIERTAAKIRELVPE- 904

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                    + + + HG+MS+   E ++  F      +L+ TT+IE G+D+ +A+ +I++ 
Sbjct: 905  --------ARVEVAHGKMSESRLEQIIVDFWERRFDVLVCTTIIETGLDISNANTLIVDG 956

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
            A+ +GL+QLHQLRGRVGRG E +    LY    PL + +  RL  +    +   G  +A 
Sbjct: 957  ADKYGLSQLHQLRGRVGRGRERAYAYFLYPSEKPLGEVALERLKAVAAHNELGAGMQLAM 1016

Query: 623  EDLKQRKEGEILGIKQSG 640
            +DL+ R  G +LG +QSG
Sbjct: 1017 KDLEIRGAGNLLGGEQSG 1034


>gi|260906157|ref|ZP_05914479.1| transcription-repair coupling factor [Brevibacterium linens BL2]
          Length = 1197

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 139/430 (32%), Positives = 228/430 (53%), Gaps = 21/430 (4%)

Query: 219  EW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W T+ A+ R A  E+ AG++  L   +Q    +G     +    +++     +  T  Q
Sbjct: 590  DWSTTKAKARKAVKEI-AGELVRLYSARQ--ATVGHTYGPDTPWQRELEDAFHYVETADQ 646

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM +   M R++ GDVG GKT +A+ A   A++ G Q  ++ P  +L QQH
Sbjct: 647  LTTIDEVKGDMEKAVPMDRLICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQH 706

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
             E   +      + V  ++    +    K +E +A G+  ++IGTH L    +++  L L
Sbjct: 707  LETFAERYSGFPVTVGALSRFQTKKESDKVVEDLAAGKLDLVIGTHRLLSGEVRFKSLGL 766

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S +   P  R P
Sbjct: 767  VIIDEEQRFGVEHKETLKAMRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHP 826

Query: 458  IKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            + T +      +I   I R   ++ EG + ++I  +++     +  SV      L     
Sbjct: 827  VLTYVGKKEDKQIKAAIRR--ELMREG-QVFYIHNRVK-----DIESVAGHIAELVPE-- 876

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + IAI HG+M++   E V+  F      +L+ TT++E GID+ +A+ +II++A+ FGL+Q
Sbjct: 877  ARIAIAHGKMNEQRLEQVIVDFWEKKFDVLVCTTIVETGIDISNANTLIIDHADRFGLSQ 936

Query: 576  LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVL-KNTE--DGFLIAEEDLKQRKE 630
            LHQLRGRVGRG E +    LY     L++ ++ RL+ L  +TE   G  +A +DL+ R  
Sbjct: 937  LHQLRGRVGRGRERAYAYFLYPADTTLTETAHDRLTTLAAHTELGAGMQVAMKDLEIRGA 996

Query: 631  GEILGIKQSG 640
            G +LG +QSG
Sbjct: 997  GNLLGGQQSG 1006


>gi|148252654|ref|YP_001237239.1| putative transcription repair coupling factor [Bradyrhizobium sp.
            BTAi1]
 gi|146404827|gb|ABQ33333.1| putative transcription repair coupling factor [Bradyrhizobium sp.
            BTAi1]
          Length = 1159

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/400 (34%), Positives = 209/400 (52%), Gaps = 14/400 (3%)

Query: 263  QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            +K +   P+  T  Q  AI+D+L D++  + M RI+ GDVG GKT VAL A AAAV AG 
Sbjct: 627  EKFVARFPYFTTPDQAKAIRDVLDDLASGHPMDRIVCGDVGFGKTEVALRAAAAAVLAGK 686

Query: 323  QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            Q  I+ P  +LA+QH+E  +K        V  ++     A  R   ER+  G+  I++GT
Sbjct: 687  QVAIVVPTTVLARQHFETFRKRFAPLGFDVGNLSRVASAADARDVRERLKSGELRIVVGT 746

Query: 383  HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
             +L    +++  L L+I+DE+  FG  ++  L+      H L M+ATPIPRTL     G 
Sbjct: 747  LSLASKEVKFADLGLIIIDEEQHFGAAEKAMLSNLNKNGHRLWMSATPIPRTLAAGLTGL 806

Query: 443  IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
             D+S I   P  R P+ T + P++ I      ++     G +++ ICP+I+     +   
Sbjct: 807  RDLSVIATPPVHRVPVATKVAPLSDIAIAAALVREHRRNG-QSFVICPRIQ-----DLDP 860

Query: 503  VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            ++ + ++L       I  IHG++   + +  +  F  G   +L+AT ++E G+D+  A+ 
Sbjct: 861  LLAKVHALVPEL--RINTIHGKLPTDEIDERLMGFVEGRTDVLLATNIVESGLDIPRANT 918

Query: 563  IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFL 619
            I++   E FGLAQLHQLRGRVGRG   +    L     S  S  RLSVL+       GF 
Sbjct: 919  IVVCWPEKFGLAQLHQLRGRVGRGGIRAFAHFLTEGG-SDRSEKRLSVLEELSRPGAGFA 977

Query: 620  IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            I+  DL  R  G++   +QSG     +  P L+  LL +A
Sbjct: 978  ISARDLDLRGGGDLRSDRQSG--HMQVFGPTLYGHLLTLA 1015


>gi|315656087|ref|ZP_07908978.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315493089|gb|EFU82689.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 1165

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/380 (32%), Positives = 191/380 (50%), Gaps = 23/380 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q + I ++  DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  I+AP 
Sbjct: 616 FVETPDQLTVIDEVKHDMEQTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAILAPT 675

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L  QH E          + V  ++         +    +  G   ++IGTHAL   ++
Sbjct: 676 TLLVSQHTETFTSRFAGFPVTVAALSRFTTAKEAAQIKAGLKDGSIEVVIGTHALLSGNV 735

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV++DE+ RFGV+ +  L        VL M+ATPIPRTL +   G   +S +T 
Sbjct: 736 RFKDLGLVVIDEEQRFGVEHKEALKALRADVDVLTMSATPIPRTLEMAITGIRGMSTLTT 795

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T +   +         + +L +G+  +               + V+  N +
Sbjct: 796 PPEDRHPVLTYVGAYSDKQVAAAIRRELLRDGQVFF-------------VHNRVQSINRI 842

Query: 511 HEHFT-----SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             H       + + + HG+MS+   ESVM  F N    +L++TT++E G+DV +A+ II+
Sbjct: 843 AAHLAELVPEARVRVGHGQMSEKQLESVMVDFWNQEFDVLVSTTIVENGLDVTNANTIIV 902

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN--SYTRLSVLKNTE---DGFLI 620
           + A+ FGL+QLHQLRGRVGRG E      LY P  + N  ++ RL  +        G  I
Sbjct: 903 DRADRFGLSQLHQLRGRVGRGRERGYAYFLYPPGTTMNETAFERLKTIGTNTGLGSGMAI 962

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A +DL+ R  G +LG +QSG
Sbjct: 963 ATKDLEIRGAGNLLGGEQSG 982


>gi|315656036|ref|ZP_07908934.1| transcription-repair coupling factor [Mobiluncus curtisii ATCC
           51333]
 gi|315490100|gb|EFU79727.1| transcription-repair coupling factor [Mobiluncus curtisii ATCC
           51333]
          Length = 1165

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/380 (32%), Positives = 191/380 (50%), Gaps = 23/380 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q + I ++  DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  I+AP 
Sbjct: 616 FVETPDQLTVIDEVKHDMEQTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAILAPT 675

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L  QH E          + V  ++         +    +  G   ++IGTHAL   ++
Sbjct: 676 TLLVSQHTETFTSRFAGFPVTVAALSRFTTAKEAAQIKAGLKDGSIEVVIGTHALLSGNV 735

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV++DE+ RFGV+ +  L        VL M+ATPIPRTL +   G   +S +T 
Sbjct: 736 RFKDLGLVVIDEEQRFGVEHKEALKALRADVDVLTMSATPIPRTLEMAITGIRGMSTLTT 795

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T +   +         + +L +G+  +               + V+  N +
Sbjct: 796 PPEDRHPVLTYVGAYSDKQVAAAIRRELLRDGQVFF-------------VHNRVQSINRI 842

Query: 511 HEHFT-----SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             H       + + + HG+MS+   ESVM  F N    +L++TT++E G+DV +A+ II+
Sbjct: 843 AAHLAELVPEARVRVGHGQMSEKQLESVMVDFWNQEFDVLVSTTIVENGLDVTNANTIIV 902

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN--SYTRLSVLKNTE---DGFLI 620
           + A+ FGL+QLHQLRGRVGRG E      LY P  + N  ++ RL  +        G  I
Sbjct: 903 DRADRFGLSQLHQLRGRVGRGRERGYAYFLYPPGTTMNETAFERLKTIGTNTGLGSGMAI 962

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A +DL+ R  G +LG +QSG
Sbjct: 963 ATKDLEIRGAGNLLGGEQSG 982


>gi|298345580|ref|YP_003718267.1| putative transcription-repair coupling factor [Mobiluncus curtisii
           ATCC 43063]
 gi|298235641|gb|ADI66773.1| possible transcription-repair coupling factor [Mobiluncus curtisii
           ATCC 43063]
          Length = 1165

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/380 (32%), Positives = 191/380 (50%), Gaps = 23/380 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q + I ++  DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  I+AP 
Sbjct: 616 FVETPDQLTVIDEVKHDMEQTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAILAPT 675

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L  QH E          + V  ++         +    +  G   ++IGTHAL   ++
Sbjct: 676 TLLVSQHTETFTSRFAGFPVTVAALSRFTTAKEAAQIKAGLKDGSIEVVIGTHALLSGNV 735

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV++DE+ RFGV+ +  L        VL M+ATPIPRTL +   G   +S +T 
Sbjct: 736 RFKDLGLVVIDEEQRFGVEHKEALKALRADVDVLTMSATPIPRTLEMAITGIRGMSTLTT 795

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T +   +         + +L +G+  +               + V+  N +
Sbjct: 796 PPEDRHPVLTYVGAYSDKQVAAAIRRELLRDGQVFF-------------VHNRVQSINRI 842

Query: 511 HEHFT-----SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             H       + + + HG+MS+   ESVM  F N    +L++TT++E G+DV +A+ II+
Sbjct: 843 AAHLAELVPEARVRVGHGQMSEKQLESVMVDFWNQEFDVLVSTTIVENGLDVTNANTIIV 902

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN--SYTRLSVLKNTE---DGFLI 620
           + A+ FGL+QLHQLRGRVGRG E      LY P  + N  ++ RL  +        G  I
Sbjct: 903 DRADRFGLSQLHQLRGRVGRGRERGYAYFLYPPGTTMNETAFERLKTIGTNTGLGSGMAI 962

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A +DL+ R  G +LG +QSG
Sbjct: 963 ATKDLEIRGAGNLLGGEQSG 982


>gi|304391135|ref|ZP_07373087.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326018|gb|EFL93264.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 1165

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/380 (32%), Positives = 191/380 (50%), Gaps = 23/380 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q + I ++  DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  I+AP 
Sbjct: 616 FVETPDQLTVIDEVKHDMEQTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAILAPT 675

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L  QH E          + V  ++         +    +  G   ++IGTHAL   ++
Sbjct: 676 TLLVSQHTETFTSRFAGFPVTVAALSRFTTAKEAAQIKAGLKDGSIEVVIGTHALLSGNV 735

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LV++DE+ RFGV+ +  L        VL M+ATPIPRTL +   G   +S +T 
Sbjct: 736 RFKDLGLVVIDEEQRFGVEHKEALKALRADVDVLTMSATPIPRTLEMAITGIRGMSTLTT 795

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T +   +         + +L +G+  +               + V+  N +
Sbjct: 796 PPEDRHPVLTYVGAYSDKQVAAAIRRELLRDGQVFF-------------VHNRVQSINRI 842

Query: 511 HEHFT-----SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             H       + + + HG+MS+   ESVM  F N    +L++TT++E G+DV +A+ II+
Sbjct: 843 AAHLAELVPEARVRVGHGQMSEKQLESVMVDFWNQEFDVLVSTTIVENGLDVTNANTIIV 902

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN--SYTRLSVLKNTE---DGFLI 620
           + A+ FGL+QLHQLRGRVGRG E      LY P  + N  ++ RL  +        G  I
Sbjct: 903 DRADRFGLSQLHQLRGRVGRGRERGYAYFLYPPGTTMNETAFERLKTIGTNTGLGSGMAI 962

Query: 621 AEEDLKQRKEGEILGIKQSG 640
           A +DL+ R  G +LG +QSG
Sbjct: 963 ATKDLEIRGAGNLLGGEQSG 982


>gi|308176608|ref|YP_003916014.1| transcription-repair-coupling factor [Arthrobacter arilaitensis
            Re117]
 gi|307744071|emb|CBT75043.1| transcription-repair-coupling factor [Arthrobacter arilaitensis
            Re117]
          Length = 1204

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/376 (32%), Positives = 205/376 (54%), Gaps = 15/376 (3%)

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q +AI ++  DM ++  M R++ GDVG GKT +A+ A   AV+   Q  ++ P 
Sbjct: 647  FIETPDQLTAINEVKSDMEKEIPMDRLISGDVGFGKTEIAVRAAFKAVQDSKQVAVLVPT 706

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +LA QH++   +      + V+ ++        ++ L  +  G   I+IGTH L   ++
Sbjct: 707  TLLASQHHQTFTERYSGFPVRVKTLSRFQTAKESKEILAGLKDGSVDIVIGTHRLLSKNV 766

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            ++  L LVIVDE+ RFGV+ + +L +  T   VL M+ATPIPRTL ++  G  + S +  
Sbjct: 767  EFKNLGLVIVDEEQRFGVEHKEELKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLAT 826

Query: 451  KPAGRKPIKTVIIPINRIDEVIE-RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R P+ T + P  R D+ I   +K  L    + +++  ++     S+   V      
Sbjct: 827  PPEERHPVLTYVGP--RSDKQISAAIKRELMRDGQVFFVHNRV-----SSIERVAAELRE 879

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            L     + I + HG+MS+   E ++  F      +L++TT+IE G+D+ +A+ +I++ A 
Sbjct: 880  LAPE--ARIEVAHGKMSESRLERIIQDFWEKKFDVLVSTTIIETGLDISNANTLIVDRAN 937

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRL-SVLKNTE--DGFLIAEED 624
            ++GL+QLHQLRGRVGRG E +    L+    PL + +  RL +V  + E   G+ +A +D
Sbjct: 938  NYGLSQLHQLRGRVGRGRERAYAYFLWDVEKPLGEVALERLKAVAAHNELGSGYQLAMKD 997

Query: 625  LKQRKEGEILGIKQSG 640
            L+ R  G +LG +QSG
Sbjct: 998  LELRGAGNLLGGEQSG 1013


>gi|295396690|ref|ZP_06806836.1| transcription-repair coupling factor [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294970436|gb|EFG46365.1| transcription-repair coupling factor [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 1202

 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 124/372 (33%), Positives = 201/372 (54%), Gaps = 13/372 (3%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q + I ++ +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +L
Sbjct: 634 TADQLTTIDEVKEDMEKPLPMDRLICGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLL 693

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            QQH+E  ++      + V  ++        ++  + I  G+  ++IGTH L    +++ 
Sbjct: 694 VQQHFETFRERYAGFPVTVGRLSRFQTPKESQQTKDDIHSGKLDVVIGTHRLLSGEVRFK 753

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L LVI+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S +   P 
Sbjct: 754 NLGLVIIDEEQRFGVEHKETLKAMRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPE 813

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P+ T +             + +L EG + ++I  +++     +  +V  R   L   
Sbjct: 814 ERHPVLTYVGKYEEKQVTAAIRRELLREG-QVFFIHNRVQ-----DIDAVATRLAELVPE 867

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             + IA+ HG+MS+   E V+  F      +L+ TT++E GID+ +A+ +I++ A+  GL
Sbjct: 868 --ARIAVAHGKMSEQQLEKVIVDFWEKQYDVLVCTTIVETGIDIANANTLIVDRADRMGL 925

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL-SVLKNTE--DGFLIAEEDLKQR 628
           +QLHQLRGRVGRG E +    LY     L++ ++ RL +V  +TE   G  +A +DL+ R
Sbjct: 926 SQLHQLRGRVGRGRERAYAYFLYPSDIELTETAHDRLETVAAHTELGAGMQVAMKDLEIR 985

Query: 629 KEGEILGIKQSG 640
             G +LG +QSG
Sbjct: 986 GAGNLLGGQQSG 997


>gi|227494754|ref|ZP_03925070.1| possible transcription-repair coupling factor [Actinomyces coleocanis
            DSM 15436]
 gi|226831754|gb|EEH64137.1| possible transcription-repair coupling factor [Actinomyces coleocanis
            DSM 15436]
          Length = 1199

 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 120/376 (31%), Positives = 202/376 (53%), Gaps = 13/376 (3%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q + I ++  DM +   M R+L GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 646  PYVETPDQLATIDEVKADMEKPTPMDRLLCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 705

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L QQH E   +      + +  ++    +    +  E++  G   ++IGTH+L   +
Sbjct: 706  TTLLVQQHLETFTQRYAGFPVDIASLSRFSSKKEADEIKEKLLKGSIDVVIGTHSLVSGA 765

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +++  L LVI+DE+ RFGV+ +  L Q  T   VL M+ATPIPRTL +   G  ++S + 
Sbjct: 766  VRFKNLGLVIIDEEQRFGVEHKETLKQLRTDVDVLSMSATPIPRTLEMAVTGIREMSVLQ 825

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R PI T  +  +   +V+  +K  L    + +++  ++E     +   V  + + 
Sbjct: 826  TPPEDRHPILT-FVGAHTDQQVVAAIKRELLRDGQVFYVHNRVE-----DIDKVAGKISE 879

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            L     + + + HG++++   E V+  F N    +LI TT++E G+D+ +A+ +I++ A+
Sbjct: 880  LVPE--ARVRVAHGKLNEHQLERVIVDFWNREFDVLICTTIVETGLDISNANTLIVDRAD 937

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEED 624
              GL+QLHQLRGRVGRG E      LY     L++ ++ RL  +    D   G  +A++D
Sbjct: 938  AMGLSQLHQLRGRVGRGRERGYAYFLYPGEKVLTETAHERLRTIATNTDLGAGIAVAQKD 997

Query: 625  LKQRKEGEILGIKQSG 640
            L+ R  G +LG +QSG
Sbjct: 998  LEIRGAGNLLGGEQSG 1013


>gi|78777763|ref|YP_394078.1| transcription-repair coupling factor [Sulfurimonas denitrificans
           DSM 1251]
 gi|78498303|gb|ABB44843.1| Transcription-repair coupling factor [Sulfurimonas denitrificans
           DSM 1251]
          Length = 990

 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 204/381 (53%), Gaps = 27/381 (7%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q  +I +I+  MS  + M R+L GDVG GKT VA+  + AA ++G Q+ ++ P 
Sbjct: 479 FLYTDDQSQSINEIITQMSSGHIMDRLLSGDVGFGKTEVAMNTIFAAYKSGFQSALIVPT 538

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L+ QHY  + +      I    +   +    +   ++ ++ G   +++GTH LF   +
Sbjct: 539 TLLSAQHYRSLHERFDALGIKCSKLDRFVSAKDKTNIIKALSSGDLDVVVGTHTLFD--L 596

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKI 448
            + KL +VI+DE+H+FGV+Q+ K+ +     H+L M+ATPIPR+L   L+S+  +  S++
Sbjct: 597 DFKKLGVVIIDEEHKFGVKQKEKIKELYHNVHLLSMSATPIPRSLNQALSSIKTM--SQL 654

Query: 449 TEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEK--KESNFRSVV 504
              P+ R+P++T +       I EV+ R    +  G + +++   I+    K    ++++
Sbjct: 655 LTPPSQRQPVRTFVKAYEEKLIKEVLLR---EIRRGGQIFYVHNSIDHMPIKLGELKALL 711

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                        + ++H ++S  D E  +  F+ G   L++AT++IE GI +   + II
Sbjct: 712 PSLR---------VVMLHSKISATDTEKELLKFEAGEYDLMLATSIIESGIHMPRVNTII 762

Query: 565 IENAEHFGLAQLHQLRGRVGRG--EEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFL 619
           ++ A+ FG+A LHQLRGRVGR   E  +  I+     L+  +  RL  L++      G +
Sbjct: 763 VDGADRFGMADLHQLRGRVGRSNVEGFAYFIVNDKETLTDEAKKRLLALESNSFLGSGSV 822

Query: 620 IAEEDLKQRKEGEILGIKQSG 640
           +A  DL+ R  G ++G  QSG
Sbjct: 823 LAYHDLEIRGGGNLVGDAQSG 843


>gi|254458302|ref|ZP_05071728.1| transcription-repair coupling factor [Campylobacterales bacterium
           GD 1]
 gi|207085138|gb|EDZ62424.1| transcription-repair coupling factor [Campylobacterales bacterium
           GD 1]
          Length = 996

 Score =  170 bits (430), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 122/418 (29%), Positives = 220/418 (52%), Gaps = 29/418 (6%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +AGQI      ++  K     I +  K  Q+  +   F  T  Q  ++ +I+  M   + 
Sbjct: 444 IAGQIVNTAAARELIK--APKITIAKKELQEFQKESGFDYTDDQTQSVDEIITQMQSGHI 501

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+L GDVG GKT VA+  + AA ++G Q+ ++ P  +L+ QHY  + +  +   I   
Sbjct: 502 MDRLLSGDVGFGKTEVAMNTIFAAYKSGFQSALIVPTTLLSAQHYRSLTERFEGMGIRYA 561

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            +   +    R   ++ +A G+   ++GTH+LF   + +  L +VI+DE+H+FGV+Q+ +
Sbjct: 562 KLDRFVSSKDRTNIIKGLASGEIDAVVGTHSLF--GLSFKNLGVVIIDEEHKFGVKQKEQ 619

Query: 414 LTQKATAPHVLLMTATPIPRTL--VLTSLGDIDISKITEKPAGRKPIKTVIIPINR--ID 469
           + +     H+L M+ATPIPR+L   L+S+    +S++   P+ R+ ++T +   +   I 
Sbjct: 620 IKELYHNVHLLSMSATPIPRSLNQALSSIK--TMSQLLTPPSERQGVRTFVKEYSEKLIK 677

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEK--KESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           EVI R    L  G + +++   I+    K    ++++             + ++H ++S 
Sbjct: 678 EVILR---ELRRGGQVFYVHNSIDHMPIKLGELKAILPDLR---------VVMLHSKISA 725

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG- 586
           ++ E  +  F+     L+IAT++IE GI + + + +I++ A+ FG+A LHQLRGRVGRG 
Sbjct: 726 VETEKELLKFEAREYDLMIATSIIESGIHMPNVNTMIVDGADRFGIADLHQLRGRVGRGH 785

Query: 587 -EEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
            E  +  I+     L+  +  RL  L++      G ++A  DL+ R  G ++G  QSG
Sbjct: 786 TEGFAYFIVKDKENLTDEAKKRLLALESNSFLGSGSVLAYHDLEIRGGGNLVGDAQSG 843


>gi|313625455|gb|EFR95204.1| transcription-repair coupling factor [Listeria innocua FSL J1-023]
          Length = 899

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 181/340 (53%), Gaps = 16/340 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T  Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETDDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQHY
Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHY 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   I++GTH L    ++Y  L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDIVVGTHRLLSKDVEYQDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +   N   + E IER    L+   + Y++  ++E        S+ ++ + +      
Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           + +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+
Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGV 899


>gi|313621017|gb|EFR92140.1| transcription-repair coupling factor [Listeria innocua FSL S4-378]
          Length = 899

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 181/340 (53%), Gaps = 16/340 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T  Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEEAFPYQETDDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQHY
Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHY 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   I++GTH L    ++Y  L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDIVVGTHRLLSKDVEYQDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751 VVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459 KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +T +   N   + E IER    L+   + Y++  ++E        S+ ++ + +      
Sbjct: 811 QTYVAEQNNVLVREAIER---ELARDGQVYYLYNRVE--------SITQKADEISAMVPD 859

Query: 517 S-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           + +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+
Sbjct: 860 ARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGV 899


>gi|320094383|ref|ZP_08026169.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 178
            str. F0338]
 gi|319978684|gb|EFW10241.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 178
            str. F0338]
          Length = 1194

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 205/381 (53%), Gaps = 23/381 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q   I ++  DM +   M R+L GDVG GKT +A+ A   A++ G QA ++ P
Sbjct: 644  PYVETPDQLVTIDEVKADMEKPVPMDRLLTGDVGYGKTEIAVRAAFKAIQDGYQAAVLVP 703

Query: 330  IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERI----AHGQAHIIIGTHA 384
              +L  QH E F ++Y       VEI  G + +    K  E +    A G+  ++IGTHA
Sbjct: 704  TTLLVTQHLETFSERYAG---FPVEI--GTLSRFSTPKQTEEVKAGLASGRIDLVIGTHA 758

Query: 385  LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
            L   ++ + KL LV++DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  +
Sbjct: 759  LLTGAVAFKKLGLVVIDEEQRFGVEHKETLKALRTDVDVLSMSATPIPRTLEMAVSGIRE 818

Query: 445  ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            +S +   P  R+P+ T  +  +   +V   ++  L    + +++  +++     +  SV 
Sbjct: 819  MSILQTPPEERQPVLT-FVGAHTDAQVSAAIRRELLRDGQVFYVHNRVD-----SINSVA 872

Query: 505  ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             R  SL     + + + HG++ +   E+V+  F N    +L+ TT++E G+D+ +A+ +I
Sbjct: 873  ARVQSLVPE--ARVRVAHGKLGEHQLEAVIQDFWNHEFDVLVCTTIVETGLDISNANTLI 930

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFL 619
            ++ A+ FGL+QLHQLRGRVGRG E +     Y     L++ ++ RL  +    D   G  
Sbjct: 931  VDRADVFGLSQLHQLRGRVGRGRERAYAYFFYPGDKALTQTAHERLKTIAANTDLGAGLA 990

Query: 620  IAEEDLKQRKEGEILGIKQSG 640
            +A+ DL+ R  G +LG  QSG
Sbjct: 991  VAQRDLEIRGAGNLLGGAQSG 1011


>gi|293189395|ref|ZP_06608118.1| transcription-repair coupling factor [Actinomyces odontolyticus
           F0309]
 gi|292821858|gb|EFF80794.1| transcription-repair coupling factor [Actinomyces odontolyticus
           F0309]
          Length = 767

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 202/386 (52%), Gaps = 33/386 (8%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q   I ++  DM +   M R+L GDVG GKT +A+ A   A++ G QA ++ P
Sbjct: 217 PYVETPDQLVTIDEVKADMEKPVPMDRLLTGDVGYGKTEIAVRAAFKAIQDGYQAAVLVP 276

Query: 330 IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERI----AHGQAHIIIGTHA 384
             +L  QH E F ++Y         +  G + +    K  E +    A G+  ++IGTH+
Sbjct: 277 TTLLVTQHAETFAERYAG-----FPVRIGTLSRFSTPKETEEVKAGLASGEVDLVIGTHS 331

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L   ++ + KL LVI+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  +
Sbjct: 332 LLTGTVSFKKLGLVIIDEEQRFGVEHKETLKALRTDVDVLSMSATPIPRTLEMAISGIRE 391

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           +S +   P  R+P+ T +             + +L +G+  Y               + V
Sbjct: 392 MSILQTPPEERQPVLTFVGAYTDAQVSAAIRRELLRDGQVFY-------------VHNRV 438

Query: 505 ERFNSLHEHFT-----SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           +  +S+  H T     + +   HG+M++   E+V+  F N    +L+ TT++E G+D+ +
Sbjct: 439 DSISSVAAHITELVPEARVRTAHGKMNEHQLEAVIQDFWNHEFDVLVCTTIVETGLDISN 498

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRL-SVLKNTE- 615
           A+ +I++ A+ FGL+QLHQLRGRVGRG E +     Y     L++ ++ RL ++  NTE 
Sbjct: 499 ANTLIVDRADTFGLSQLHQLRGRVGRGRERAYAYFFYPGDKALTETAHERLKTIAANTEL 558

Query: 616 -DGFLIAEEDLKQRKEGEILGIKQSG 640
             G  +A+ DL+ R  G +LG  QSG
Sbjct: 559 GAGLAVAQRDLEIRGAGNLLGGAQSG 584


>gi|154507723|ref|ZP_02043365.1| hypothetical protein ACTODO_00205 [Actinomyces odontolyticus ATCC
            17982]
 gi|153797357|gb|EDN79777.1| hypothetical protein ACTODO_00205 [Actinomyces odontolyticus ATCC
            17982]
          Length = 1194

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 202/382 (52%), Gaps = 25/382 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q   I ++  DM +   M R+L GDVG GKT +A+ A   A++ G QA ++ P
Sbjct: 644  PYVETPDQLVTIDEVKADMEKPVPMDRLLTGDVGYGKTEIAVRAAFKAIQDGYQAAVLVP 703

Query: 330  IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              +L  QH E F ++Y      I  +   + P+    +    +A G+  ++IGTH+L   
Sbjct: 704  TTLLVTQHAETFAERYAGFPVRIGTLSRFSTPK-ETEEVKAGLASGEVDLVIGTHSLLTG 762

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++ + KL LVI+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S +
Sbjct: 763  TVSFKKLGLVIIDEEQRFGVEHKETLKALRTDVDVLSMSATPIPRTLEMAISGIREMSIL 822

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
               P  R+P+ T +             + +L +G+  Y               + V+  +
Sbjct: 823  QTPPEERQPVLTFVGAYTDAQVSAAIRRELLRDGQVFY-------------VHNRVDSIS 869

Query: 509  SLHEHFT-----SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            S+  H T     + +   HG+M++   E+V+  F N    +L+ TT++E G+D+ +A+ +
Sbjct: 870  SVAAHITELVPEARVRTAHGKMNEHQLEAVIQDFWNHEFDVLVCTTIVETGLDISNANTL 929

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRL-SVLKNTE--DGF 618
            I++ A+ FGL+QLHQLRGRVGRG E +     Y     L++ ++ RL ++  NTE   G 
Sbjct: 930  IVDRADTFGLSQLHQLRGRVGRGRERAYAYFFYPGDKALTETAHERLKTIAANTELGAGL 989

Query: 619  LIAEEDLKQRKEGEILGIKQSG 640
             +A+ DL+ R  G +LG  QSG
Sbjct: 990  AVAQRDLEIRGAGNLLGGAQSG 1011


>gi|117929120|ref|YP_873671.1| transcription-repair coupling factor [Acidothermus cellulolyticus
            11B]
 gi|117649583|gb|ABK53685.1| transcription-repair coupling factor [Acidothermus cellulolyticus
            11B]
          Length = 1192

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 131/380 (34%), Positives = 207/380 (54%), Gaps = 21/380 (5%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q   I+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P
Sbjct: 639  PYVETPDQLRTIEEVKADMERPVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLCP 698

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +L QQHY    +   N  ++V+ ++       + + L  +A G   ++IGTH L  D 
Sbjct: 699  TTLLVQQHYATFSERFANFPVVVKPVSRFNTFKEQEEILAGLAAGTVDVVIGTHRLLSDG 758

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + +  L LVIVDE+ RFGV+ + +L +  T   VL M+ATPIPRTL +   G  ++S I 
Sbjct: 759  VVFKDLGLVIVDEEQRFGVEHKERLKRLRTNVDVLTMSATPIPRTLEMAITGIREMSVIQ 818

Query: 450  EKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVE 505
              P  R P+ T + P +  +I   I R   +L EG + +++  ++E  E+  +  R +V 
Sbjct: 819  TPPEERHPVLTFVGPFDEHQIAAAIRR--ELLREG-QVFYVHNRVETIEQAAARVRELVP 875

Query: 506  RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                      + +A+ HG+M++   E VM  F      +L+ TT+IE G+D+ +A+ +I+
Sbjct: 876  E---------ARVAVAHGQMNEDALEQVMIGFWERAFDVLVCTTIIESGLDIPNANTLIV 926

Query: 566  ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLI 620
            E A+  GL QL+QLRGRVGRG E       Y    PL++ ++ RL+ +    D   G  I
Sbjct: 927  ERADLLGLGQLYQLRGRVGRGRERGYAYFCYPADRPLTETAHDRLATIAQHSDLGSGMSI 986

Query: 621  AEEDLKQRKEGEILGIKQSG 640
            A +DL+ R  G +LG +QSG
Sbjct: 987  AMKDLEIRGAGNLLGGEQSG 1006


>gi|255522527|ref|ZP_05389764.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J1-175]
          Length = 244

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/234 (38%), Positives = 148/234 (63%), Gaps = 5/234 (2%)

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           RK I+T  +    +D VI  ++  + +G + Y ICP IEE ++ + ++ ++ FN L   +
Sbjct: 1   RKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYIICPLIEESEKLDVQNAIDVFNILQNKW 60

Query: 515 TSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
            +     ++HG++   DKE +M  F N     L++TTV+EVG++V +A++++I +A+ FG
Sbjct: 61  GTKYIPGLMHGKLLPADKEQIMRDFNNKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFG 120

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LAQLHQLRGRVGRG + S CIL+  P  ++    R+ ++  T DGF+++E DL+ R  G+
Sbjct: 121 LAQLHQLRGRVGRGADQSYCILIADPK-TEVGKERMMIMSETNDGFVVSERDLELRGPGD 179

Query: 633 ILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
             G KQSG+P+F +A   +HD  +LEIAR+DA H++ ++  L +   + +  LL
Sbjct: 180 FFGRKQSGVPEFKVADM-VHDYRVLEIARQDAVHMIFEEDMLENKNYEKLVALL 232


>gi|297572061|ref|YP_003697835.1| transcription-repair coupling factor [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296932408|gb|ADH93216.1| transcription-repair coupling factor [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 1168

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 200/378 (52%), Gaps = 25/378 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q S I D+ +DM     M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L
Sbjct: 618 TPDQISTIDDVKRDMESLEPMDRLISGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL 677

Query: 334 AQQHYE-FIKKYTQNTQIIVEII---TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
            QQH E F ++Y+     +  +    T    +  R+ A E    G   ++IGTH L    
Sbjct: 678 VQQHLETFTERYSGFPVTVAGLSRFQTAKEAEGVRKGARE----GTIDVVIGTHRLITGD 733

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L LVI+DE+ RFGV+ +  L Q   A  VL M+ATPIPRTL +   G   +S + 
Sbjct: 734 VRFKDLGLVIIDEEQRFGVEHKEMLKQLYPAVDVLSMSATPIPRTLEMAVTGIRQMSTLA 793

Query: 450 EKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             P  R PI T +      +I   I+R   +L +G+  Y     I  + +S  +   E  
Sbjct: 794 TPPEERHPILTYVGGHEPKQISAAIKR--ELLRDGQVFY-----IHNRTQSIHKVAAEIS 846

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             + E   + + + HG+M++   E V+ +F +    +L+ TT++E G+D+ +A+ +I+E+
Sbjct: 847 ELVPE---ARVGVAHGKMTEHQLEDVIQAFWDKEIDVLVCTTIVETGLDISNANTLIVED 903

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
           A   GL+QLHQLRGRVGRG + +    LY     +++ +  RL  +    +   G  +A 
Sbjct: 904 AHKLGLSQLHQLRGRVGRGRDRAYAYFLYPRDKAMTETAIERLRTIATHSELGAGIHVAM 963

Query: 623 EDLKQRKEGEILGIKQSG 640
           +DL+ R  G +LG +QSG
Sbjct: 964 KDLEIRGAGNLLGGEQSG 981


>gi|206895775|ref|YP_002247109.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase
           mfd), putative [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738392|gb|ACI17470.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase
           mfd), putative [Coprothermobacter proteolyticus DSM
           5265]
          Length = 849

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 125/421 (29%), Positives = 207/421 (49%), Gaps = 39/421 (9%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           KQ K      I  + +I     ++  F  T  Q+ A +++   ++  +    ++ G+ G 
Sbjct: 328 KQKKSTQSFTIEPDEEIESAFAQSFQFEETSDQKQATEELHAWLAIPHPEEALIIGESGV 387

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN--MPQA 362
           GKT V + A  A   AG +AVI+ P  +L  Q   ++  Y++  Q    +++ +  +P  
Sbjct: 388 GKTEVLMRAAVAVASAGYKAVIVVPTRVLVDQ---YMAAYSERIQSCGLLLSDDPALPW- 443

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
                          I++GTH+L +  +   KL LVI DE+ +FGV  +    +      
Sbjct: 444 --------------DILVGTHSLLKKQLYDDKLALVIFDEEQKFGVTHKNWFQEHFPWVK 489

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           V+  +ATPIPRT  L   G + + ++ E P GR+ + TV       D V + L   L  G
Sbjct: 490 VIFSSATPIPRTFFLARRGYVKLIRMHELPYGRQKV-TVFADEYSPDLVRKVLSDELDRG 548

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGT 541
               +I P IE         +  R   L + F  + I ++H RM+D   +S+    + G 
Sbjct: 549 GLVIYIHPTIE--------GIDLRALELQQMFLDAEIEVLHARMTDKRIKSIFKKLQEGK 600

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ATT++E G+D+  A+ I++E+A H G++Q++QL+GRVGR         LY P  S
Sbjct: 601 IDILVATTIMEAGVDLPIANTIVVEDATHLGVSQMYQLKGRVGRNSVKGYAWFLYPPTAS 660

Query: 602 KNSYTRL-SVLK--NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH--DSLL 656
             + +R+ S +K  N  D + +AE D + R  GEI GI+Q G    L+ Q ++   D+LL
Sbjct: 661 PATRSRIHSTVKLLNYSDSYALAELDTRYRGIGEIFGIRQHG----LVKQEDVFAVDALL 716

Query: 657 E 657
           E
Sbjct: 717 E 717


>gi|323449501|gb|EGB05389.1| hypothetical protein AURANDRAFT_66466 [Aureococcus anophagefferens]
          Length = 863

 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 141/486 (29%), Positives = 227/486 (46%), Gaps = 67/486 (13%)

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQ-------IALLLMRKQFKKEIGIPINVEGKIAQ 263
            PR +K   W+ P   R   D   A         + L   R    ++   P + E   A 
Sbjct: 173 GPRLSK---WSKPEVWRGKRDRAEAASRDHARDLLTLAAARSSRSRDACAPFDDEA--AA 227

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            +   + +  T  Q    +D+ +DM    R L  +   VG GKT +A+ A A AV++G Q
Sbjct: 228 LLEAGLGYELTAGQRQCWEDVEEDMC---RRLAPMDRLVGFGKTELAVRAAALAVKSGRQ 284

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEII-----------TGNMPQAHR--RKALER 370
             I+AP  +LAQQHY+  ++  +   I VE +           TG    + +  R+  E+
Sbjct: 285 VAILAPTTVLAQQHYKVFRRRLEPLGITVEFLRSPSRKYVDEATGKKASSAKECRRVREQ 344

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           +A G+  + +GTHAL      ++ L L ++DE+ RFGV+Q+ +L        VL ++ATP
Sbjct: 345 VASGRCGVCVGTHALLSPKQVWHTLGLAVIDEEQRFGVRQKERLKAACVDVDVLTLSATP 404

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVII---PINRIDE--VIERLKVVLSEGKKA 485
           IPRTL     G  D S++ + P GR    +++    P  + D+  +   L+  L+ G + 
Sbjct: 405 IPRTLGAALAGLRDTSELPDPPPGRGETSSLVARDQPGRKEDDYFLTAILEKELARGGQC 464

Query: 486 YWICPQIEEKKESNFR-------------------SVVERFNSLHEHFTSSIAIIHGRMS 526
           +++ P+I +   +  R                      +  +   +    +IA+ HGR+ 
Sbjct: 465 FYVVPRIADVPAARRRLLGALRAIGHPAAARVDAPGEPDDDDDAEDPSGGAIAVAHGRVD 524

Query: 527 DIDKESVMDSFKNG---TCKLLIATT----VIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             D  +V+  F  G   T  +L+ATT     +E G+D+   + I+I++A  FGLA LHQL
Sbjct: 525 --DPAAVVADFAAGDNETRPVLLATTLVENCVENGLDLPRCNTIVIQDAHRFGLASLHQL 582

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED-----GFLIAEEDLKQRKEGEIL 634
           RGRVGRGE  +  + LY P     +    + L+   D     G  +A  DL+ R  G +L
Sbjct: 583 RGRVGRGERKALAVFLY-PRDGATTDAAAARLRAVADVDAKSGPELARRDLEIRGAGALL 641

Query: 635 GIKQSG 640
           G +QSG
Sbjct: 642 GTRQSG 647


>gi|315606044|ref|ZP_07881075.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 180
            str. F0310]
 gi|315312326|gb|EFU60412.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 180
            str. F0310]
          Length = 1194

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/382 (32%), Positives = 200/382 (52%), Gaps = 25/382 (6%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            P+  T  Q   I ++  DM +   M R+L GDVG GKT +A+ A   A++ G QA ++ P
Sbjct: 644  PYVETPDQLVTIDEVKADMEKAVPMDRLLTGDVGYGKTEIAVRAAFKAIQDGYQAAVLVP 703

Query: 330  IGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              +L  QH E F ++Y      I  +   + P+    +    +  G+  ++IGTH+L   
Sbjct: 704  TTLLVTQHAETFSERYAGFPVRIGTLSRFSTPK-ETEEVKAGLVSGEVDLVIGTHSLLTG 762

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++ + KL LVI+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S +
Sbjct: 763  TVSFKKLGLVIIDEEQRFGVEHKETLKALRTDVDVLSMSATPIPRTLEMAISGIREMSIL 822

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
               P  R+P+ T +             + +L +G+  Y               + V+  +
Sbjct: 823  QTPPEERQPVLTFVGAYTDAQVSAAIRRELLRDGQVFY-------------VHNRVDSIS 869

Query: 509  SLHEHFT-----SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            S+  H       + +   HG+M++   E+V+  F N    +L+ TT++E G+D+ +A+ +
Sbjct: 870  SVAAHIGELVPEARVRTAHGKMNEHQLEAVIQDFWNHEFDVLVCTTIVETGLDISNANTL 929

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRL-SVLKNTE--DGF 618
            I++ A+ FGL+QLHQLRGRVGRG E +     Y     L++ ++ RL ++  NTE   G 
Sbjct: 930  IVDRADTFGLSQLHQLRGRVGRGRERAYAYFFYPGDKALTETAHERLKTIAANTELGAGL 989

Query: 619  LIAEEDLKQRKEGEILGIKQSG 640
             +A+ DL+ R  G +LG  QSG
Sbjct: 990  AVAQRDLEIRGAGNLLGGAQSG 1011


>gi|157412008|gb|ABV54630.1| RecG [Enterococcus faecium]
          Length = 193

 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 132/193 (68%), Gaps = 3/193 (1%)

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           G++D+S I E PAGR PI+T  +   ++D V++  +  L+ G + Y ICP IEE +  + 
Sbjct: 2   GEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKELARGHQMYVICPLIEESEALDV 61

Query: 501 RSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           ++ VE +  L E F     + ++HG+M + +KE +M++FK+   ++L++TTVIEVG++V 
Sbjct: 62  KNAVEVYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFKDNQMQILVSTTVIEVGVNVP 121

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P  ++    R+ ++  T +GF
Sbjct: 122 NATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANPK-NELGVERMKIMTETTNGF 180

Query: 619 LIAEEDLKQRKEG 631
           +++E+DL+ R  G
Sbjct: 181 VLSEKDLELRGPG 193


>gi|218506539|ref|ZP_03504417.1| ATP-dependent DNA helicase protein [Rhizobium etli Brasil 5]
          Length = 226

 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 85/208 (40%), Positives = 119/208 (57%), Gaps = 1/208 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K++      + R IDLLF+ P S IDR  +P 
Sbjct: 16  MRPAILDPLFSPISGLPGVGPKIAELLVKLLGRETPEDCRVIDLLFHAPFSLIDRRNQPG 75

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 76  IALSPQGAIVTITARVDRHQVPPRGKSNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPI 135

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GK+     R  MVHP YI    +  N PL+E +Y L  GLS    +KII  AL
Sbjct: 136 DAEVTVSGKVDWFNGRASMVHPDYIVRAEEAENLPLVEPIYPLTAGLSPTTLRKIIDAAL 195

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFN 207
            R P L EWI+  L QK+  PSI ++F+
Sbjct: 196 PRFPELAEWIDLSLTQKQGLPSIRDSFH 223


>gi|157412006|gb|ABV54629.1| RecG [Enterococcus faecium]
          Length = 193

 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 132/193 (68%), Gaps = 3/193 (1%)

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           G++D+S I E PAGR PI+T  +   ++D V++  +  L+ G + Y ICP IEE +  + 
Sbjct: 2   GEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKELARGHQMYVICPLIEESEALDV 61

Query: 501 RSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           ++ VE +  L E F     + ++HG+M + +KE +M++FK+   ++L++TTVIEVG++V 
Sbjct: 62  KNAVEVYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFKDNQMQILVSTTVIEVGVNVP 121

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P  ++    R+ ++  T +GF
Sbjct: 122 NATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANPK-NELGVERMKIMTETTNGF 180

Query: 619 LIAEEDLKQRKEG 631
           +++E+DL+ R  G
Sbjct: 181 VLSEKDLEIRGPG 193


>gi|91070277|gb|ABE11195.1| ATP-dependent DNA helicase recG [uncultured Prochlorococcus marinus
           clone HF10-88D1]
          Length = 216

 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 88/195 (45%), Positives = 126/195 (64%), Gaps = 7/195 (3%)

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNG 540
           K+AY I P IE+ ++ N  S  + F  L E   F   + ++HG++S  +K  V++SF   
Sbjct: 1   KQAYVILPLIEDSEKMNLSSAKKIFKHLSEEVFFNKKVGLLHGKLSSQEKNEVINSFLKN 60

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVGIDV +A+I+II N+E FGL+QLHQLRGRVGRG   S C L+     
Sbjct: 61  KINILVSTTVIEVGIDVPNATIMIIYNSERFGLSQLHQLRGRVGRGSTKSFCYLVTS--- 117

Query: 601 SKNSY--TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            KN     RL VL+ + DGF IAE+DL+ R  G+ILG +QSG+P F++     +  L++ 
Sbjct: 118 DKNGLENKRLCVLQKSNDGFYIAEKDLELRGPGQILGYRQSGLPDFVLDNLPNNKFLIDK 177

Query: 659 ARKDAKHILTQDPDL 673
           AR++A  I++ DPDL
Sbjct: 178 AREEAIKIVSNDPDL 192


>gi|325473855|gb|EGC77043.1| hypothetical protein HMPREF9353_01391 [Treponema denticola F0402]
          Length = 437

 Score =  157 bits (398), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/270 (38%), Positives = 157/270 (58%), Gaps = 17/270 (6%)

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH + Q  + +  L L+IVDE+ RFGV+ + +L Q       L ++ATPIPRTL +
Sbjct: 3   ILIGTHRIIQKDVVFKDLGLMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLHM 62

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + L   D+S I   P  RKP++TVI   N  ++ EVI R       G + +++  ++E  
Sbjct: 63  SLLKIRDMSVIATPPQNRKPVETVIAEFNAEKVAEVIRRES---ERGGQVFYLHNRVESL 119

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E+ F        SL       I   HG+MS    E + + F  G  ++LIATT+IE GI
Sbjct: 120 DETLFM-----LQSLLPEIM--IETAHGQMSPNQLEEIFERFSLGGFQVLIATTIIENGI 172

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN 613
           D+ +A+ III+ A+ +G++QL+QLRGRVGR ++ +   LLY     LS+ +  RL V+ +
Sbjct: 173 DIPNANTIIIDRADMYGVSQLYQLRGRVGRSDKKAYAYLLYPDDKALSEIAMKRLQVISD 232

Query: 614 -TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
            TE   GF IA +D++ R  G +LG +QSG
Sbjct: 233 FTELGSGFKIAMKDMEIRGAGNLLGREQSG 262


>gi|213586753|ref|ZP_03368579.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 200

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 78/155 (50%), Positives = 111/155 (71%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           +I ++HGRM   +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQL
Sbjct: 26  NIGLVHGRMKPAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQL 85

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG   S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG 
Sbjct: 86  HQLRGRVGRGAVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGT 145

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           +Q+G  +F +A      +++   ++ A+HI  + P
Sbjct: 146 RQTGNAEFKVADLLRDQAMIPEVQRIARHIHERYP 180


>gi|225011287|ref|ZP_03701744.1| helicase domain protein [Flavobacteria bacterium MS024-3C]
 gi|225004597|gb|EEG42562.1| helicase domain protein [Flavobacteria bacterium MS024-3C]
          Length = 465

 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 157/280 (56%), Gaps = 17/280 (6%)

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           ER+ +G+  I+IGTH L   ++++  L L+IVDE+ +FGV  + KL        VL +TA
Sbjct: 1   ERLENGRIDIVIGTHQLVNKAVKFKDLGLLIVDEEQKFGVGVKDKLKSLKENVDVLTLTA 60

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAY 486
           TPIPRTL  + +   D+S I   P  R PI++ ++   R +E +  E +   +    + +
Sbjct: 61  TPIPRTLQFSLMAARDLSVINTAPPNRYPIESNVV---RFNETLIREAISYEIQRDGQVF 117

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +I  +IE   E     +++R         + + I HG+M     E++M +F  G   +L+
Sbjct: 118 FIHNRIENITE--VAGLIQRLVP-----DARVGIGHGQMEGKKLENLMKAFMGGEFDVLV 170

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNS 604
           +TT+IE G+DV +A+ I I NA +FGL+ LHQ+RGRVGR  + + C  +  P   ++ ++
Sbjct: 171 STTIIESGLDVSNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYEVMTADA 230

Query: 605 YTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGM 641
             R+  L+       GF IA +DL+ R  G+ILG +QSG 
Sbjct: 231 RKRIQALEQFTALGSGFNIAMKDLEIRGAGDILGGEQSGF 270


>gi|117676155|ref|YP_863731.1| helicase domain-containing protein [Shewanella sp. ANA-3]
 gi|117614979|gb|ABK50432.1| helicase domain protein [Shewanella sp. ANA-3]
          Length = 664

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 201/424 (47%), Gaps = 38/424 (8%)

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           +P++ E +     ++++PF  T+ Q+SA   ++  M+       +L GDVG+GK+ V   
Sbjct: 251 VPLHFESEAIDNRIKSLPFQMTEEQKSAAFSMVTQMTSAVSQHMMLIGDVGTGKSCVIGT 310

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQ-HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A+ V+AGG+  IM P   LA+Q H EF + Y   +  +V         +         
Sbjct: 311 CAASVVDAGGRVAIMLPTSNLARQLHREFSEYYPDISPTLVIEGEIIEEIS--------- 361

Query: 372 AHGQAHIIIGTHALFQDSIQY-YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
              Q  ++IGT A+     Q+ +   L +VDEQH+F V+QR      A   H+L  TATP
Sbjct: 362 ---QCRMLIGTTAILHK--QWPFTFDLTVVDEQHKFSVEQRELFC--ADGAHLLESTATP 414

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           +PRT  L   G + + ++      ++ I++ ++      ++  R    L  G+K   +C 
Sbjct: 415 VPRTAALLKHGVLKVYELKHCFVDKR-IESRLLEHYAGRDLAIRALATLQSGQKLLIVCA 473

Query: 491 QIEEKKESNFRSVVE---------RFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFK 538
             +E K   F  +           RF   + H     S + + HG +++ +  + +D+  
Sbjct: 474 LKDESKCEAFADIQNATETYEKWCRFIHSNRHVLPDGSGVVLAHGGLTNEENAAAIDALN 533

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATT++E G+ +   +  I+ N +  GL QLHQLRGR+ R   +    LL  P
Sbjct: 534 TGDANVLVATTLVETGLTIKGLTHCIVMNPDRLGLVQLHQLRGRLARHGGVGYFDLLLPP 593

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI-------LGIKQSGMPKFLIAQPEL 651
            +S  S  RL ++     G  +A ED+K R  G++        G+ Q  +  + I   +L
Sbjct: 594 EISPKSKDRLELISQISHGVTLAIEDMKLRGFGDLTKSGRSQTGVNQRYLFGYKINLDDL 653

Query: 652 HDSL 655
           +D++
Sbjct: 654 NDAI 657


>gi|255018656|ref|ZP_05290782.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL F2-515]
          Length = 190

 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 126/190 (66%), Gaps = 5/190 (2%)

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSF 537
            +G + Y ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F
Sbjct: 1   DKGHQVYIICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDF 60

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +     L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  
Sbjct: 61  NDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIAD 120

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLL 656
           P  ++    R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A   +HD  +L
Sbjct: 121 PK-TEVGKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVAD-MVHDYRVL 178

Query: 657 EIARKDAKHI 666
           EIAR+DA H+
Sbjct: 179 EIARQDAVHM 188


>gi|332865867|ref|ZP_08436651.1| putative transcription-repair coupling factor [Acinetobacter
           baumannii 6013113]
 gi|332735079|gb|EGJ66164.1| putative transcription-repair coupling factor [Acinetobacter
           baumannii 6013113]
          Length = 869

 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 165/322 (51%), Gaps = 18/322 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSKP--GFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
           T +       I E I R    L  G + Y++  ++E  E+   N R +V           
Sbjct: 793 TFVQEHTDASIKEAILR---ELLRGGQVYFLHNEVETIERAAENIRVLVPE--------- 840

Query: 516 SSIAIIHGRMSDIDKESVMDSF 537
           + +A+ HG+M + + E VM  F
Sbjct: 841 ARVAVAHGQMRERELEQVMQQF 862


>gi|313893282|ref|ZP_07826857.1| nucleic acid-binding domain protein [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442178|gb|EFR60595.1| nucleic acid-binding domain protein [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 352

 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 181/354 (51%), Gaps = 26/354 (7%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+T +G+G      L K+        T    LL Y P ++ DR    +I ++       +
Sbjct: 5   LTTIKGIGPGREKQLHKL------GITNITSLLTYFPRTYEDRRTIYRIGDLKSGMTGGV 58

Query: 73  TGYISQHSSFQLQKRRP------YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            G +       +Q++RP       ++++ DGTG + ++ F +  +  KN + +G+++   
Sbjct: 59  VGTV-----IAVQEKRPRPRLSILEVVIADGTGPLKIVLFNQGYK--KNFYKKGQRLYAY 111

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           GK +     + M  P     N  D   P   I  +Y+L  G+S  + +  +    +    
Sbjct: 112 GKAEFQYGSMQMNTPQ--IENLGDGGEPDRGIVPIYALAEGVSQFVVRSSVRNWFAANHE 169

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE + K++ +   + S  +AF ++H P  ++ +E    AR +LAY+EL   Q  L L+R
Sbjct: 170 LPEILPKEVREAHHYMSRYDAFKMMHFPDSSERYE---EARHQLAYEELFVMQAGLALLR 226

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            + +   G  +   G++  + + N+PFS T  Q+ A++DI  DM  +  M R+LQGDVGS
Sbjct: 227 NKEQCHRGPKMGPNGELMARCIENLPFSLTGDQQRALEDIRIDMEDERPMQRLLQGDVGS 286

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           GKT+VA +++  A+E G Q  +MAP  ILA QHYE I +   N  I +E++TG+
Sbjct: 287 GKTVVATLSLLKAIENGYQGALMAPTEILAAQHYEGITEVCGNLGITIELLTGS 340


>gi|145636878|ref|ZP_01792543.1| transcription-repair coupling factor [Haemophilus influenzae
           PittHH]
 gi|145269959|gb|EDK09897.1| transcription-repair coupling factor [Haemophilus influenzae
           PittHH]
          Length = 878

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 160/301 (53%), Gaps = 14/301 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 584 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 643

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++   
Sbjct: 644 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTILLAQQHYENFKDRFANLPVNVEVLSRFK 703

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ LE +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K+ Q   
Sbjct: 704 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRA 763

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I+  PA R  IKT    + + D+++ R + +L
Sbjct: 764 NIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTF---VRQNDDLVVR-EAIL 819

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +     ++  +  E+  +L     + + + HG+M + + E VM  
Sbjct: 820 REILRGGQVYYLHNDV-----ASIENTAEKLTALVPE--ARVIVGHGQMRERELERVMSD 872

Query: 537 F 537
           F
Sbjct: 873 F 873


>gi|207092341|ref|ZP_03240128.1| DNA recombinase (recG) [Helicobacter pylori HPKX_438_AG0C1]
          Length = 357

 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 177/342 (51%), Gaps = 29/342 (8%)

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAH 363
           +V L +M  A     + ++MAP  ILA+Q Y    +F+  Y +     VE++ G   +  
Sbjct: 1   MVILASMVLAYP--NKTLLMAPTSILAKQLYNEALKFLPPYFE-----VELLLGGSYKKR 53

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
                E I H    ++IGT AL  D     +  LVI DEQHRFG +QR +L + A++   
Sbjct: 54  SNHLFETITH----VVIGTQALLFDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGN 109

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L  +ATPIPRTL L     +  + I E P   K I+T+++       V+E++   +
Sbjct: 110 KPHSLQFSATPIPRTLALAKSAFVKTTMIREIPYP-KEIETLVLHKRDFKIVMEKISEEI 168

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           ++  +   + P + E ++  + S+ E  +   + F   +    G+  D +KE V++ F+ 
Sbjct: 169 AKNHQVIVVYPLVNESEKIPYLSLSEGASFWQKRF-KKVYTTSGQ--DKNKEEVIEEFRE 225

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            +  +L+ATT+IEVGI +   S+++I   E  GLA LHQLRGRV R      C L     
Sbjct: 226 -SGSILLATTLIEVGISLPRLSVMVILAPERLGLATLHQLRGRVSRNGLKGYCFLC---- 280

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSG 640
             +    RL    +  DGF IAE DL+ RK G++L G +QSG
Sbjct: 281 TIQEENERLEKFADELDGFKIAELDLEYRKSGDLLHGGEQSG 322


>gi|330861382|emb|CBX71615.1| transcription-repair-coupling factor [Yersinia enterocolitica
           W22703]
          Length = 740

 Score =  150 bits (378), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 167/332 (50%), Gaps = 15/332 (4%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G     + +  Q   ++ PF  T  QE AI  +L DM +   M R++ 
Sbjct: 387 LLDIYAQRAAKSGFKFKFDREQYQLFCQSFPFETTPDQEQAINAVLSDMCRPLAMDRLVC 446

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++  +       + +E+++   
Sbjct: 447 GDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFR 506

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               ++  LE+ A G+  IIIGTH L Q  +++  L L+IVDE+HRFGV+ + ++     
Sbjct: 507 SAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWQDLGLLIVDEEHRFGVRHKERIKAMRA 566

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L +TATPIPRTL +   G  D+S I   PA R  +KT    +   D ++ R + +L
Sbjct: 567 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF---VREYDSLVVR-EAIL 622

Query: 480 SE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            E   G + Y++   +E     N     ++   L     + IAI HG+M + D E VM+ 
Sbjct: 623 REILRGGQVYYLYNDVE-----NIEKATQKLAELVPE--ARIAIGHGQMRERDLERVMND 675

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           F +    +  A  + + G+ +  A I +  NA
Sbjct: 676 FHHQRFNVWSAPPLSKRGL-IFRAPIPLSSNA 706


>gi|13235378|emb|CAC33727.1| RecG protein [Rickettsia typhi]
          Length = 355

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 177/360 (49%), Gaps = 33/360 (9%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LFAP+  F  + +       ++      N  R  DLLFY P S+ ++   P ++E+    
Sbjct: 10  LFAPVKAFINIREDTVSAFKRL----GINNIR--DLLFYLPVSYQNKILSPNLTEVRGGE 63

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+  T  I    + Q +  +P KI  ++ TG I L+FF++  + + N    G K  ++GK
Sbjct: 64  IIQ-TEIIVNSINLQKKGNQPLKITASNNTGSILLVFFHKPPQFILNKLKVGTKHIISGK 122

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++    ++ ++HP +I +         IE +YS+   LS       I++A+       + 
Sbjct: 123 VQFFNYQLQILHPEFITNPKLS---KAIEPLYSITYSLSNKQLYSYIIKAIEIFEEKCKG 179

Query: 189 IEKD--------LLQK----------KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
           IE          +LQ            +  S +   +I+ NPR A     T  A+++LA 
Sbjct: 180 IEDKEVHEYLDVILQNLKILHVFFSPHNLISWSSTMDIVVNPRYA-----TVAAKKQLAI 234

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            EL+A QI+LL +R Q  ++ G        I   ILR + F  T  Q+  I++I  + S 
Sbjct: 235 KELIANQISLLNVRMQINRKQGNIYPKATSIQDNILRELGFELTYYQKQVIEEIESEQSD 294

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           K  M+R+LQGDVGSGKTLVAL+ M   V  G QA +MAP  +LA QHY+F  K  +NT I
Sbjct: 295 KVEMMRLLQGDVGSGKTLVALLTMVNVVTTGLQATLMAPTDLLANQHYDFFVKALKNTNI 354


>gi|167547406|gb|ABZ82480.1| ATP-dependent DNA helicase [Pseudomonas corrugata]
          Length = 156

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/139 (53%), Positives = 98/139 (70%)

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 2   FKAGALQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLY 61

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           HPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL
Sbjct: 62  HPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLL 121

Query: 657 EIARKDAKHILTQDPDLTS 675
              R  A+ +L + P+  S
Sbjct: 122 PAVRDAAQALLERWPEHVS 140


>gi|225378011|ref|ZP_03755232.1| hypothetical protein ROSEINA2194_03671 [Roseburia inulinivorans DSM
           16841]
 gi|225210164|gb|EEG92518.1| hypothetical protein ROSEINA2194_03671 [Roseburia inulinivorans DSM
           16841]
          Length = 190

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 76/174 (43%), Positives = 115/174 (66%), Gaps = 1/174 (0%)

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           T  I ++HG+M    K  VM+ F     ++L++TTV+EVG++V +A++++IENAEHFGLA
Sbjct: 8   TIEIGLLHGQMKSAQKNDVMERFAANEIQVLVSTTVVEVGVNVPNATVMMIENAEHFGLA 67

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG+  S CI++ +   SK S  RL +L  + DGF IA EDLK R  G+  
Sbjct: 68  QLHQLRGRVGRGDAQSYCIMV-NCSNSKESQKRLDILNQSNDGFKIASEDLKLRGPGDFF 126

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLY 688
           GI+QSG  +F +A       +++ A ++   IL +DP+L+S   ++++  L L+
Sbjct: 127 GIRQSGEMQFALADIYQDAYIMQRASEEVADILGKDPELSSEDHKNLKDYLELF 180


>gi|122936787|dbj|BAF45214.1| transcription-repair coupling factor [uncultured bacterium]
          Length = 479

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/280 (35%), Positives = 155/280 (55%), Gaps = 19/280 (6%)

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           +++  G+  I+IGTH L   SI+Y  L L+I+DE+HRFGV+Q+  L +      +L MTA
Sbjct: 32  QQLLEGKVDIVIGTHKLIHGSIKYKNLGLIIIDEEHRFGVKQKESLKKIRGQSDILTMTA 91

Query: 429 TPIPRTLVLTSLGDI-DISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKA 485
           TPIPRTL + +LG + ++S I   P GR  I+T +   +   I EV  R    L  G + 
Sbjct: 92  TPIPRTLNM-ALGSLRELSIIATPPQGRSAIQTFVNEWSDATIKEVCSR---ELHRGGQI 147

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           + +   I+     +  ++ ER  SL  +  + + I HG+M   + E +M  F +G  ++L
Sbjct: 148 FVLHNDID-----SIDNMAERLTSLIPN--ARVRIAHGQMPTRELEQIMSDFYHGRFQIL 200

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL--LYHPPLSKN 603
           + TT+IE GID+ +A+ III NA++FG   +  +            C+     H  LSKN
Sbjct: 201 VCTTIIETGIDIPNANTIIINNAQNFGFGAIAPIAWASLSFTSSGVCVFGDKSHQSLSKN 260

Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           +  RL  +++ E+   GF++A  DL+ R  G++LG  QSG
Sbjct: 261 AKKRLDAVESLEELGAGFMLANHDLEIRGAGDLLGDNQSG 300


>gi|213613339|ref|ZP_03371165.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 247

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 130/222 (58%), Gaps = 4/222 (1%)

Query: 201 SIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
           S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L +R   ++    P++
Sbjct: 23  SLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSMLALRAGAQRYHTQPLS 82

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
               +  K+L ++PF PT +Q   + +I +DM+    M+R++QGDVGSGKTLVA +A   
Sbjct: 83  TNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALR 142

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           A+  G Q  +MAP  +LA+QH    + + +   + V  + G      R+   E IA GQ 
Sbjct: 143 AIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKGKARQAQQEAIASGQV 202

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
            +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K 
Sbjct: 203 QMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKG 244


>gi|270693399|ref|ZP_06222955.1| ATP-dependent DNA helicase recG [Haemophilus influenzae HK1212]
 gi|270316005|gb|EFA28049.1| ATP-dependent DNA helicase recG [Haemophilus influenzae HK1212]
          Length = 160

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/116 (58%), Positives = 89/116 (76%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           +I ++HGRM   +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QL
Sbjct: 45  NIGLVHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQL 104

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           HQLRGRVGRG   S C+L+Y PPL K S  RL VL++++DGF+I+E+DL+ R  GE
Sbjct: 105 HQLRGRVGRGSTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGE 160


>gi|255589662|ref|XP_002535040.1| hypothetical protein RCOM_0410940 [Ricinus communis]
 gi|223524144|gb|EEF27343.1| hypothetical protein RCOM_0410940 [Ricinus communis]
          Length = 217

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 75/160 (46%), Positives = 102/160 (63%), Gaps = 4/160 (2%)

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + ++H RM   +K++VM+ F  G   +L++TTVIEVG+DV +AS+++IE+AE FGL+QLH
Sbjct: 7   VGLLHSRMPTAEKKAVMELFSAGVMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLH 66

Query: 578 QLRGRVGRGEEISSCILLY----HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           QLRGRVGRG   S+C+LLY       L + +  RL  +  T DGF IA  DL+ R  GE 
Sbjct: 67  QLRGRVGRGAAASACVLLYSVGDSGRLGETAKDRLRAMAETNDGFEIARRDLEIRGPGEF 126

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           LG +QSG P    A  E    LL+ AR+ A  +L Q P L
Sbjct: 127 LGARQSGAPMLRFADLEQDLMLLDWARELAPRMLEQHPQL 166


>gi|312866897|ref|ZP_07727110.1| TRCF domain protein [Streptococcus parasanguinis F0405]
 gi|311097680|gb|EFQ55911.1| TRCF domain protein [Streptococcus parasanguinis F0405]
          Length = 405

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 142/255 (55%), Gaps = 27/255 (10%)

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI---DEVIERLKVVL 479
           VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N     D V+  +    
Sbjct: 3   VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTFVLETNPTIIRDAVLREM---- 58

Query: 480 SEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
             G + Y++  +++  ++K S  + ++           +SI  +HG+MS++  E+ +  F
Sbjct: 59  DRGGQVYYLYNKVDTIDQKVSELKELIPE---------ASIGFVHGQMSEVRLENTLLDF 109

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            NG   +L+ TT+IE G+D+ +A+ + IENA+H GL+ L+QLRGRVGR   I+   L+Y 
Sbjct: 110 INGEYDVLVTTTIIETGVDIPNANTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYR 169

Query: 598 P--PLSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           P   L++ S  RL  +K  TE   GF IA  DL  R  G ILG  QSG    +    E++
Sbjct: 170 PDKSLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSV--GFEMY 227

Query: 653 DSLLE--IARKDAKH 665
             LLE  IA+K  + 
Sbjct: 228 SQLLEEAIAKKQGQE 242


>gi|218513284|ref|ZP_03510124.1| transcription-repair coupling factor [Rhizobium etli 8C-3]
          Length = 338

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 148/276 (53%), Gaps = 7/276 (2%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   R+  +  E +A  +  L   ++ +K  G     +    ++     P+S T  Q 
Sbjct: 68  EWTKTKRKVSSKIEDIADDLIKLYAARESEK--GYAFGPDDAYQKEFENAFPYSETDDQL 125

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 126 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 185

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 186 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 245

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 246 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 305

Query: 459 KTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQI 492
           +T ++  N   I E I R    +  G + +++  ++
Sbjct: 306 QTYVMEKNPGAIREAIHR---EMGRGGQVFYLYNRV 338


>gi|315113069|dbj|BAJ41814.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 163

 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 101/161 (62%)

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY  I    +N  + V ++TG+     RR+  + +A G  +++IGTHAL Q+ + + KL
Sbjct: 2   QHYHKISAMLENFGVRVALLTGSTKTMERREIYKELADGSINVVIGTHALIQEQVAFKKL 61

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LVI+DEQHRFGV QRL L  K   P +L MTATPIPR+L LT  GD  +S+I   PAGR
Sbjct: 62  GLVIIDEQHRFGVVQRLALINKGDRPDILAMTATPIPRSLALTVYGDTALSEIRHLPAGR 121

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           KPIK+     +++DEV   ++  L+EG + Y + P I E +
Sbjct: 122 KPIKSYWKTSSQLDEVYSLMRQQLAEGFQIYAVTPLISESE 162


>gi|215426300|ref|ZP_03424219.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis T92]
 gi|289749551|ref|ZP_06508929.1| transcription-repair coupling factor [Mycobacterium tuberculosis
           T92]
 gi|289690138|gb|EFD57567.1| transcription-repair coupling factor [Mycobacterium tuberculosis
           T92]
          Length = 364

 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 84/248 (33%), Positives = 139/248 (56%), Gaps = 13/248 (5%)

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           ++VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P
Sbjct: 1   MVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYP 60

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + T + P +   ++   L+  L    +A+++  ++     S+  +   R   L     + 
Sbjct: 61  VLTYVGPHDD-KQIAAALRRELLRDGQAFYVHNRV-----SSIDAAAARVRELVPE--AR 112

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + + HG+M +   E+ +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLH
Sbjct: 113 VVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLH 172

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G 
Sbjct: 173 QLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGN 232

Query: 633 ILGIKQSG 640
           +LGI+QSG
Sbjct: 233 VLGIEQSG 240


>gi|237756331|ref|ZP_04584882.1| transcription-repair-coupling factor [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691501|gb|EEP60558.1| transcription-repair-coupling factor [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 624

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/246 (33%), Positives = 138/246 (56%), Gaps = 3/246 (1%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P+  + ++  K  R  PF  T  Q  AIKDI  D S+   M R++ GDVG GKT VA+  
Sbjct: 370 PLKTDDELISKFEREFPFVETPDQIKAIKDIKSDFSKPKPMERLICGDVGFGKTEVAIRG 429

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  +V  G QA+++ P  +LA QHY+ +K+  +   IIVE ++    +      ++    
Sbjct: 430 IFISVINGYQALLLVPTTVLAYQHYKKLKERLEPYGIIVENLSRLKSKKENDNTIKAFEE 489

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G+  +++ TH +   ++ + KL L+++DE+HRFGV+ + K+ Q   +   L +TATPIPR
Sbjct: 490 GKIDVLVATHKILHTNLSFNKLGLLVIDEEHRFGVKAKEKIRQIRESVDTLYLTATPIPR 549

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQI 492
           TL +   G  DIS +   P GR  IKT +   N  +E+I++ ++  +    + +++  +I
Sbjct: 550 TLNMALSGLKDISVLNTPPEGRYEIKTYV--SNFDEELIKKAIEFEIDRNGQVFYLHNRI 607

Query: 493 EEKKES 498
           E  KE+
Sbjct: 608 ETIKET 613


>gi|315113087|dbj|BAJ41823.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus]
 gi|315113093|dbj|BAJ41826.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus]
 gi|315113097|dbj|BAJ41828.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus]
          Length = 162

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 101/161 (62%)

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY  I    ++  + V ++TG+     RR+  + +A G  +++IGTHAL Q+ + + KL
Sbjct: 2   QHYHKISAMLEDFGVRVALLTGSTKTMERREIYKELADGSINVVIGTHALIQEQVAFKKL 61

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LVI+DEQHRFGV QRL L  K   P +L MTATPIPR+L LT  GD  +S+I   PAGR
Sbjct: 62  GLVIIDEQHRFGVVQRLALINKGDRPDILAMTATPIPRSLALTVYGDTALSEIRHLPAGR 121

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           KPIK+     +++DEV   ++  L+EG + Y + P I E +
Sbjct: 122 KPIKSYWKTSSKLDEVYSLMRQQLAEGFQIYAVTPLISESE 162


>gi|315113129|dbj|BAJ41844.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii]
          Length = 163

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 101/161 (62%)

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY  I    ++  + V ++TG+     RR+  + +A G  +++IGTHAL Q+ + + KL
Sbjct: 2   QHYRKISAMLEDFGVRVALLTGSTKTMERREIYKELADGSINVVIGTHALIQEQVAFKKL 61

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LVI+DEQHRFGV QRL L  K   P +L MTATPIPR+L LT  GD  +S+I   PAGR
Sbjct: 62  GLVIIDEQHRFGVVQRLALINKGDRPDILAMTATPIPRSLALTVYGDTALSEIRHLPAGR 121

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           KPIK+     +++DEV   ++  L+EG + Y + P I E +
Sbjct: 122 KPIKSYWKTSSQLDEVYSLMRQQLAEGFQIYAVTPLISESE 162


>gi|325657333|gb|ADZ39148.1| DNA recombinase [Borrelia burgdorferi]
          Length = 217

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 125/217 (57%), Gaps = 1/217 (0%)

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QHY+ +        I + ++TG++ +  + +ALE I +G + +I+GTHA+F +S ++ 
Sbjct: 1   ARQHYDNLSNILAPFNISMTLLTGSLRKKDKEQALESIRNGTSGLIVGTHAIFYESTEFK 60

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +L  VI+DEQH+FGV QR +L  K     +LLM+ATPIPR+  LT  GD+++S I   P 
Sbjct: 61  RLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEVSFIKTLPK 120

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GR PI T +      D+V E L+  L +G + Y++ P I   ++   + V      L E 
Sbjct: 121 GRLPITTYLARHGNEDKVYEFLRKELLKGHQVYFVYPLISSSEKFELKGVNNMCLKLKEV 180

Query: 514 FTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           F   +  ++H ++    KE +M +F +    +L+AT+
Sbjct: 181 FGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATS 217



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT-TVIEVGIDVVDASIIIIENAEHFG 572
           F  S+ ++ G +   DKE  ++S +NGT  L++ T  +     +    + +II+    FG
Sbjct: 15  FNISMTLLTGSLRKKDKEQALESIRNGTSGLIVGTHAIFYESTEFKRLAYVIIDEQHKFG 74

Query: 573 LAQLHQLRGRVGRG 586
           + Q  +L+ + G G
Sbjct: 75  VVQREELKNK-GEG 87


>gi|325657313|gb|ADZ39138.1| DNA recombinase [Borrelia burgdorferi]
 gi|325657315|gb|ADZ39139.1| DNA recombinase [Borrelia burgdorferi]
 gi|325657317|gb|ADZ39140.1| DNA recombinase [Borrelia burgdorferi]
 gi|325657319|gb|ADZ39141.1| DNA recombinase [Borrelia burgdorferi]
 gi|325657321|gb|ADZ39142.1| DNA recombinase [Borrelia burgdorferi]
 gi|325657325|gb|ADZ39144.1| DNA recombinase [Borrelia burgdorferi]
 gi|325657327|gb|ADZ39145.1| DNA recombinase [Borrelia burgdorferi]
 gi|325657329|gb|ADZ39146.1| DNA recombinase [Borrelia burgdorferi]
 gi|325657331|gb|ADZ39147.1| DNA recombinase [Borrelia burgdorferi]
 gi|325657335|gb|ADZ39149.1| DNA recombinase [Borrelia burgdorferi]
 gi|325657337|gb|ADZ39150.1| DNA recombinase [Borrelia burgdorferi]
          Length = 217

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 125/217 (57%), Gaps = 1/217 (0%)

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QHY+ +        I + ++TG++ +  + +ALE I +G + +I+GTHA+F +S ++ 
Sbjct: 1   ARQHYDNLSNILAPFNISMTLLTGSLRKKDKEQALESIRNGTSGLIVGTHAIFYESTEFK 60

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +L  VI+DEQH+FGV QR +L  K     +LLM+ATPIPR+  LT  GD+++S I   P 
Sbjct: 61  RLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEVSFIKTLPK 120

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GR PI T +      D+V E L+  L +G + Y++ P I   ++   + V      L E 
Sbjct: 121 GRLPITTYLARHGNEDKVYEFLRKELLKGHQVYFVYPLISSSEKFELKDVNNMCLKLKEV 180

Query: 514 FTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           F   +  ++H ++    KE +M +F +    +L+AT+
Sbjct: 181 FGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATS 217



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT-TVIEVGIDVVDASIIIIENAEHFG 572
           F  S+ ++ G +   DKE  ++S +NGT  L++ T  +     +    + +II+    FG
Sbjct: 15  FNISMTLLTGSLRKKDKEQALESIRNGTSGLIVGTHAIFYESTEFKRLAYVIIDEQHKFG 74

Query: 573 LAQLHQLRGRVGRG 586
           + Q  +L+ + G G
Sbjct: 75  VVQREELKNK-GEG 87


>gi|315113103|dbj|BAJ41831.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           delbrueckii]
 gi|315113117|dbj|BAJ41838.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii]
 gi|315113119|dbj|BAJ41839.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii]
          Length = 163

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 101/161 (62%)

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY  I    ++  + V ++TG+     RR+  + +A G  +++IGTHAL Q+ + + KL
Sbjct: 2   QHYHKISAMLEDFGVRVALLTGSTKTMERREIYKELADGSINVVIGTHALIQEQVAFKKL 61

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LVI+DEQHRFGV QRL L  K   P +L MTATPIPR+L LT  GD  +S+I   PAGR
Sbjct: 62  GLVIIDEQHRFGVVQRLSLINKGDRPDILAMTATPIPRSLALTVYGDTALSEIRHLPAGR 121

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           KPIK+     +++DEV   ++  L+EG + Y + P I E +
Sbjct: 122 KPIKSYWKTSSQLDEVYSLMRQQLAEGFQIYAVTPLISESE 162


>gi|315113085|dbj|BAJ41822.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus]
 gi|315113089|dbj|BAJ41824.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus]
 gi|315113091|dbj|BAJ41825.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus]
 gi|315113095|dbj|BAJ41827.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus]
          Length = 162

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 101/161 (62%)

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY  I    ++  + V ++TG+     RR+  + +A G  +++IGTHAL Q+ + + KL
Sbjct: 2   QHYHKISAMLEDFGVRVALLTGSTKTMERREIYKELADGSINVVIGTHALIQEQVAFKKL 61

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LVI+DEQHRFGV QRL L  K   P +L MTATPIPR+L LT  GD  +S+I   PAGR
Sbjct: 62  GLVIIDEQHRFGVVQRLALINKGDRPDILAMTATPIPRSLALTVYGDTALSEIRHLPAGR 121

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           KPIK+     +++DEV   ++  L+EG + Y + P I E +
Sbjct: 122 KPIKSYWKTSSQLDEVYSLMRQQLAEGFQIYAVTPLISESE 162


>gi|325657323|gb|ADZ39143.1| DNA recombinase [Borrelia burgdorferi]
          Length = 217

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 124/217 (57%), Gaps = 1/217 (0%)

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QHY+ +        I + ++TG + +  + +ALE I +G + +I+GTHA+F +S ++ 
Sbjct: 1   ARQHYDNLSNILAPFNISMTLLTGGLRKKDKEQALESIRNGTSGLIVGTHAIFYESTEFK 60

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +L  VI+DEQH+FGV QR +L  K     +LLM+ATPIPR+  LT  GD+++S I   P 
Sbjct: 61  RLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDLEVSFIKTLPK 120

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GR PI T +      D+V E L+  L +G + Y++ P I   ++   + V      L E 
Sbjct: 121 GRLPITTYLARHGNEDKVYEFLRKELLKGHQVYFVYPLISSSEKFELKDVNNMCLKLKEV 180

Query: 514 FTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           F   +  ++H ++    KE +M +F +    +L+AT+
Sbjct: 181 FGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATS 217


>gi|315113053|dbj|BAJ41806.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           delbrueckii]
 gi|315113055|dbj|BAJ41807.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii]
 gi|315113057|dbj|BAJ41808.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii]
 gi|315113059|dbj|BAJ41809.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii]
 gi|315113061|dbj|BAJ41810.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii]
 gi|315113063|dbj|BAJ41811.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           delbrueckii]
 gi|315113065|dbj|BAJ41812.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           lactis]
 gi|315113067|dbj|BAJ41813.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           lactis]
 gi|315113071|dbj|BAJ41815.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           lactis]
 gi|315113073|dbj|BAJ41816.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           lactis]
 gi|315113079|dbj|BAJ41819.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           lactis]
 gi|315113081|dbj|BAJ41820.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           lactis]
 gi|315113083|dbj|BAJ41821.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           lactis]
 gi|315113107|dbj|BAJ41833.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           indicus]
 gi|315113109|dbj|BAJ41834.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           indicus]
 gi|315113111|dbj|BAJ41835.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii]
 gi|315113113|dbj|BAJ41836.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii]
 gi|315113115|dbj|BAJ41837.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii]
 gi|315113121|dbj|BAJ41840.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii]
 gi|315113123|dbj|BAJ41841.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii]
 gi|315113125|dbj|BAJ41842.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii]
 gi|315113127|dbj|BAJ41843.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii]
 gi|315113131|dbj|BAJ41845.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii]
          Length = 163

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 101/161 (62%)

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY  I    ++  + V ++TG+     RR+  + +A G  +++IGTHAL Q+ + + KL
Sbjct: 2   QHYHKISAMLEDFGVRVALLTGSTKTMERREIYKELADGSINVVIGTHALIQEQVAFKKL 61

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LVI+DEQHRFGV QRL L  K   P +L MTATPIPR+L LT  GD  +S+I   PAGR
Sbjct: 62  GLVIIDEQHRFGVVQRLALINKGDRPDILAMTATPIPRSLALTVYGDTALSEIRHLPAGR 121

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           KPIK+     +++DEV   ++  L+EG + Y + P I E +
Sbjct: 122 KPIKSYWKTSSQLDEVYSLMRQQLAEGFQIYAVTPLISESE 162


>gi|315113101|dbj|BAJ41830.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           delbrueckii]
          Length = 163

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 101/161 (62%)

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY  I    ++  + V ++TG+     RR+  + +A G  +++IGTHAL Q+ + + KL
Sbjct: 2   QHYHKISAMLEDFGVRVALLTGSTKTMERREIYKELADGSINVVIGTHALIQEQVAFKKL 61

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LVI+DEQHRFGV QRL L  K   P +L MTATPIPR+L LT  GD  +S+I   PAGR
Sbjct: 62  GLVIIDEQHRFGVVQRLSLINKGDRPDILSMTATPIPRSLALTVYGDTALSEIRHLPAGR 121

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           KPIK+     +++DEV   ++  L+EG + Y + P I E +
Sbjct: 122 KPIKSYWKTSSQLDEVYSLMRQQLAEGFQIYAVTPLISESE 162


>gi|167945236|ref|ZP_02532310.1| ATP-dependent DNA helicase RecG [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 233

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/219 (35%), Positives = 128/219 (58%), Gaps = 4/219 (1%)

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIAL 240
           L E + + L Q  + P + +A   +H P          E   PA++RL ++ELLA QI+L
Sbjct: 15  LTELLPEPLRQGLAMPDLRQAILYLHRPPPDAPQPLLLEGAHPAQQRLTFEELLAHQISL 74

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R+Q ++     +  +G++ + +L  +PF  T +Q+  + +I +D+++   M R++QG
Sbjct: 75  RELRQQQRQTRAPALLGDGRLRRPLLAQLPFELTAAQQRVVGEIERDLAEPVPMQRLVQG 134

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT+VA +    AVEAG Q  +MAP  +LA+QH    +++ +   + +  ITG + 
Sbjct: 135 DVGCGKTIVAALTALQAVEAGLQVALMAPTELLAEQHLRSFRQWLEPLDLNIAWITGRLK 194

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              R   LERIA G+A +++GTHALFQD + +  L LVI
Sbjct: 195 GKAREAQLERIAQGEAQLVVGTHALFQDDVLFAGLGLVI 233


>gi|213161435|ref|ZP_03347145.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 154

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 95/134 (70%)

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 1   KQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 60

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      +++ 
Sbjct: 61  SPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIP 120

Query: 658 IARKDAKHILTQDP 671
             ++ A+HI  + P
Sbjct: 121 EVQRIARHIHERYP 134


>gi|213161681|ref|ZP_03347391.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 406

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 129/226 (57%), Gaps = 19/226 (8%)

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE- 481
           +L +TATPIPRTL +   G  D+S I   PA R  +KT +      D ++ R + +L E 
Sbjct: 9   ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV---REYDSLVVR-EAILREI 64

Query: 482 --GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G + Y++   +E     N +   ER   L     + IAI HG+M + + E VM+ F +
Sbjct: 65  LRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIAIGHGQMRERELERVMNDFHH 117

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HP 598
               +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  HP
Sbjct: 118 QRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 177

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG
Sbjct: 178 KAMTADAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 223


>gi|270687031|ref|ZP_06222863.1| ATP-dependent DNA helicase recG [Haemophilus influenzae HK1212]
 gi|270316155|gb|EFA28139.1| ATP-dependent DNA helicase recG [Haemophilus influenzae HK1212]
          Length = 163

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 96/158 (60%), Gaps = 4/158 (2%)

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q  +MAP  ILA+QH    +++ +   I V  + G +    R+  LE+I  G   +++
Sbjct: 3   GKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGKSRQAELEKIKTGAVQMVV 62

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLV 436
           GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K       PH L+MTATPIPRTL 
Sbjct: 63  GTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAGFYPHQLIMTATPIPRTLA 122

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
           +T   D+D S I E P GR PI TV++   R  E+  R
Sbjct: 123 MTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIYRR 160


>gi|238783786|ref|ZP_04627805.1| Transcription-repair-coupling factor [Yersinia bercovieri ATCC
           43970]
 gi|238715337|gb|EEQ07330.1| Transcription-repair-coupling factor [Yersinia bercovieri ATCC
           43970]
          Length = 413

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/226 (39%), Positives = 126/226 (55%), Gaps = 19/226 (8%)

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE- 481
           +L +TATPIPRTL +   G  D+S I   PA R  +KT +      D ++ R + +L E 
Sbjct: 16  ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV---REYDSLVIR-EAILREI 71

Query: 482 --GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G + Y++   +E     N     +R   L     + IAI HG+M + D E VM+ F +
Sbjct: 72  LRGGQVYYLYNDVE-----NIEKATQRLAELVPE--ARIAIGHGQMRERDLERVMNDFHH 124

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL   P
Sbjct: 125 QRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNP 184

Query: 600 --LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG
Sbjct: 185 KAMTADAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 230


>gi|228902358|ref|ZP_04066515.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis IBL 4222]
 gi|228857327|gb|EEN01830.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis IBL 4222]
          Length = 176

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 67/144 (46%), Positives = 102/144 (70%), Gaps = 3/144 (2%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGR+S  +KE +M  F     ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLR
Sbjct: 1   MHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLR 60

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG E S C+L+  P  S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSG
Sbjct: 61  GRVGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSG 119

Query: 641 MPKFLIAQPELHD-SLLEIARKDA 663
           +P+F +A   +HD   LE AR+DA
Sbjct: 120 LPEFKVAD-MVHDYRALETARQDA 142


>gi|315113099|dbj|BAJ41829.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           indicus]
 gi|315113105|dbj|BAJ41832.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           indicus]
          Length = 163

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 100/161 (62%)

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY  I    ++  + V ++TG+     RR+  + +A G  +++IGTHAL Q+ + + KL
Sbjct: 2   QHYHKISAMLEDFGVRVALLTGSTKTMERREIYKELADGSINVVIGTHALIQEQVAFKKL 61

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LVI+DEQHRFGV QRL L  K   P +L MTATPIPR+L LT  GD  +S+I   PAGR
Sbjct: 62  GLVIIDEQHRFGVVQRLALINKGDRPDILAMTATPIPRSLALTVYGDTALSEIRHLPAGR 121

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           KPIK+     +++DEV   +   L+EG + Y + P I E +
Sbjct: 122 KPIKSYWKTSSQLDEVYSLMHQQLAEGFQIYAVTPLISESE 162


>gi|315113075|dbj|BAJ41817.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           lactis]
 gi|315113077|dbj|BAJ41818.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 163

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 101/161 (62%)

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY  I    ++  + V ++TG+     RR+  + +A G  +++IGTHAL Q+ + + KL
Sbjct: 2   QHYHKISAMLEDFGVRVALLTGSTKTMERREIYKELADGIINVVIGTHALIQEQVAFKKL 61

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LVI+DEQHRFGV QRL L  K   P +L MTATPIPR+L LT  GD  +S+I   PAGR
Sbjct: 62  GLVIIDEQHRFGVVQRLALINKGDRPDILAMTATPIPRSLALTVYGDTALSEIRHLPAGR 121

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           KPIK+     +++DEV   ++  L+EG + Y + P I E +
Sbjct: 122 KPIKSYWKTSSQLDEVYSLMRQQLAEGFQIYAVTPLISESE 162


>gi|261884470|ref|ZP_06008509.1| transcription-repair coupling factor [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 325

 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 145/274 (52%), Gaps = 9/274 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
           D++ T P       D  +A ++  L  +++ +K  G   + +  + +      P+  T+ 
Sbjct: 48  DWKKTKPKVSNAVKD--IADELIKLYAKREAEK--GFAFDKDDDLQRSFENAFPYEETED 103

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  +I+++ +DM +   M R++ GDVG GKT VA+     AV  G Q   + P  ILAQQ
Sbjct: 104 QLRSIEEVKRDMERSRPMDRLICGDVGYGKTEVAIRGAFKAVNNGKQVAFLVPTTILAQQ 163

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HYE +K       I V +++    +  + + ++ +  G   +++GTH +    + Y  L 
Sbjct: 164 HYETMKARFAGYPIEVGLLSRFRTKKQQPETIKGLKDGTIDVVVGTHRILSKDVVYRDLG 223

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+IVDE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  D+S I   PA R 
Sbjct: 224 LLIVDEEQRFGVSHKEKIKQLKTNVDVLTLTATPIPRTLHMSMIGVRDLSVIETPPANRF 283

Query: 457 PIKTVIIPINR--IDEVIERLKVVLSEGKKAYWI 488
           P++T ++  N   + E IER    ++ G + +++
Sbjct: 284 PVQTYVMEFNGALVREAIER---EMARGGQVFYL 314


>gi|270662326|ref|ZP_06222412.1| ATP-dependent DNA helicase recG [Haemophilus influenzae HK1212]
 gi|270316883|gb|EFA28592.1| ATP-dependent DNA helicase recG [Haemophilus influenzae HK1212]
          Length = 111

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 65/109 (59%), Positives = 85/109 (77%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           +I ++HGRM   +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QL
Sbjct: 3   NIGLVHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQL 62

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           HQLRGRVGRG   S C+L+Y PPL K S  RL VL++++DGF+I+E+DL
Sbjct: 63  HQLRGRVGRGSTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDL 111


>gi|156602934|ref|XP_001618742.1| hypothetical protein NEMVEDRAFT_v1g224852 [Nematostella vectensis]
 gi|156200154|gb|EDO26642.1| predicted protein [Nematostella vectensis]
          Length = 343

 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 103/167 (61%), Gaps = 1/167 (0%)

Query: 252 GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
           G P  + G        N +PF  T +Q+  IK+I  D+    +M R+LQGDVGSGKT+VA
Sbjct: 16  GHPFEIIGDNFTNFYNNHLPFELTNAQKRVIKEIRNDLGSHAQMNRLLQGDVGSGKTIVA 75

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           L+ M  A +   Q+ +MAP  ILA QH+  I +  ++  I + ++TG+   A RRK  E 
Sbjct: 76  LLCMLIAKDNDFQSCLMAPTEILATQHFNGISELAKDLDIKIVLLTGSTKTAARRKIHEA 135

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           + +G+  I+IGTHAL +D +++  L   I+DEQHRFGV+QR KL +K
Sbjct: 136 LENGELDILIGTHALLEDKVKFRNLGFAIIDEQHRFGVEQRSKLWKK 182


>gi|13235387|emb|CAC33662.1| RecG protein [Rickettsia rickettsii]
          Length = 367

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 170/339 (50%), Gaps = 40/339 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLFY P S+ ++   P ++E+ +  I+  T  + +  +   +  +P KI  ++ TG + 
Sbjct: 37  DLLFYLPVSYQNKILSPNLTEVRDGDIIQ-TEIVVESINLPKKSSQPLKITASNDTGSLL 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159
           L+FF++    + N    G    ++GK++   + + + HP +I      VN  L   IE +
Sbjct: 96  LVFFHKPPPFIFNKLQVGTSHIISGKVQFFDHYLQIAHPEFI------VNPKLAKEIEPI 149

Query: 160 YSLPTGLS-----------VDLFKK---------------IIVEALSRLPVLPEWIEKDL 193
           YSL   LS           +++F++               II++ L  L V     E  +
Sbjct: 150 YSLTYLLSNKKLYSYIIKAIEIFEEKCKSIEDKEVKDYLDIILQNLQMLHVFHHCEEACM 209

Query: 194 LQKKSFPSIAEAFNI-IHNPRKA-KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
             K+S  S  ++ N  +  P K  ++ +  + A+++LA  EL+A QI+LL +R Q  +  
Sbjct: 210 PTKQS--SNVKSINARLPQPLKGLRNDDLYTNAKKQLAAKELIANQISLLNVRTQISRRQ 267

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G        I   IL  + F  T  Q+  I++I  D S K  M+R+LQGDVGSGKTLVAL
Sbjct: 268 GNIYPKAVSIQANILNELGFELTSYQKQVIEEIECDQSDKIEMMRLLQGDVGSGKTLVAL 327

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           + M   V  G QA +MAP  +LA QHYEF  K  +NT I
Sbjct: 328 LTMVNVVATGFQATLMAPTDLLANQHYEFFVKALKNTNI 366


>gi|315113051|dbj|BAJ41805.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           delbrueckii]
          Length = 163

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 100/161 (62%)

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHY  I    ++  + V ++T +     RR+  + +A G  +++IGTHAL Q+ + + KL
Sbjct: 2   QHYHKISAMLEDFGVRVALLTRSTKTMERREIYKELADGSINVVIGTHALIQEQVSFKKL 61

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            LVI+DEQHRFGV QRL L  K   P +L MTATPIPR+L LT  GD  +S+I   PAGR
Sbjct: 62  GLVIIDEQHRFGVVQRLALINKGDRPDILAMTATPIPRSLALTVYGDTALSEIRHLPAGR 121

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           KPIK+     +++DEV   ++  L+EG + Y + P I E +
Sbjct: 122 KPIKSYWKTSSQLDEVYSLMRQQLAEGFQIYAVTPLISESE 162


>gi|313608163|gb|EFR84208.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL F2-208]
          Length = 169

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 100/158 (63%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT+VA IAM AA ++G Q+ +M
Sbjct: 7   SLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKTVVASIAMYAAAKSGFQSALM 66

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILA+QH   + +  Q   I V ++T ++    RR+ L  + +G   ++IGTHAL Q
Sbjct: 67  VPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRRELLAMLENGSIDVLIGTHALIQ 126

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           D + Y++L LVI DEQHRFGV QR  L +K   P VL 
Sbjct: 127 DEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLF 164


>gi|257893211|ref|ZP_05672864.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,408]
 gi|257829590|gb|EEV56197.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,408]
          Length = 374

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 191/392 (48%), Gaps = 24/392 (6%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           ++  VT+ G +      + F  +K R  ++++       ++  FF +    LK       
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVS--FFNQP--YLKEKVILSE 109

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +I V GK      R  +     +   + D   P+     S+     VDL KK   E  + 
Sbjct: 110 EIAVYGKWDA--KRKALNGMKILGSQTMDDFSPIYHVNKSIRQTTLVDLIKKGFQEYGT- 166

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
             ++ E +  +L++K      A A   +H P   K+ E    A+ R+ ++E    Q+ L 
Sbjct: 167 --LIEENLPNNLVEKYRLLDRASAVRSMHFP---KNHEENHQAKRRVVFEEFFLFQMRLQ 221

Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++K  K E  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQG
Sbjct: 222 GLKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQG 281

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ V ++TG+  
Sbjct: 282 DVGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTVALLTGSTK 341

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
              RR+ LE++  G+ +++IGTHAL QD +++
Sbjct: 342 TKERRELLEKLERGEINVVIGTHALIQDGVEF 373


>gi|326492798|dbj|BAJ90255.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 631

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 129/217 (59%), Gaps = 3/217 (1%)

Query: 279 SAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +A  DI  D++++   M R++ GDVG GKT VA+ A+   V  G QA+++AP  ILA QH
Sbjct: 413 TAFIDIENDLTERETPMDRLICGDVGFGKTEVAMRAIFIVVSTGYQAMVLAPTVILANQH 472

Query: 338 YEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           ++ + ++++    I V I +G   +  + + + +I +G   II+GTHAL  + + Y  L 
Sbjct: 473 FDVMSERFSNYPDIKVAIFSGAQSKDEKDELITKITNGHLQIIVGTHALLTERMAYNNLG 532

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L++VDE+ +FGVQQ+ K+     +  VL ++ATPIPRTL L   G  D S ++  P  R 
Sbjct: 533 LLVVDEEQKFGVQQKEKIASLKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERV 592

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            +KT +   +R +  +  +K+ L  G + +++ P+I+
Sbjct: 593 AVKTYVSAFSR-ESALSAIKLELKRGGQVFYVVPRIK 628


>gi|294668402|ref|ZP_06733505.1| hypothetical protein NEIELOOT_00320 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309720|gb|EFE50963.1| hypothetical protein NEIELOOT_00320 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 385

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 146/284 (51%), Gaps = 6/284 (2%)

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H     + R+   + + D +G +  L F       +     G++I   G+IK       M
Sbjct: 65  HQEVTFKPRKQLIVQIADDSGSVLFLRFIHFYASHQKQMAAGKRIRAVGEIKHGFYGDEM 124

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP      S  +   L   +Y    GL+    ++II  AL   P L + +   LL +  
Sbjct: 125 IHPKIRDAESSGLAESLT-PIYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLK 182

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +AE+  ++H+P  +      S    PA +RL +DELLA Q+++ L R++        
Sbjct: 183 LPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAAA 242

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +G + Q +   +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 243 LGGDGTLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSA 302

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
             A+E+G QA +MAP  ILA+QH+   K++ +   + V  ++G+
Sbjct: 303 LTAIESGAQAAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGS 346


>gi|213420794|ref|ZP_03353860.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 367

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/200 (38%), Positives = 109/200 (54%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 166 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 225

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 226 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 285

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 286 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 345

Query: 443 IDISKITEKPAGRKPIKTVI 462
            D+S I   PA R  +KT +
Sbjct: 346 RDLSIIATPPARRLAVKTFV 365


>gi|13235400|emb|CAC33599.1| RecG protein [Rickettsia montanensis]
          Length = 367

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 167/338 (49%), Gaps = 38/338 (11%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLFY P S+ ++   P ++E+ +  I+  T  + +  +   +  +P KI  ++ TG + 
Sbjct: 37  DLLFYLPVSYQNKILSPNLTEVRDGDIIQ-TEIVVESINLPKKSSQPLKITASNDTGSLL 95

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAV 159
           L+FF++    + N    G    ++GK++   + + + HP +I      VN  L   IE +
Sbjct: 96  LVFFHKPPPFIFNKLQVGTSHIISGKVQFFDHYLQISHPEFI------VNPKLVKEIEPI 149

Query: 160 YSLPTGLS-----------VDLFKK---------------IIVEALSRLPVLPEWIEKDL 193
           YSL   LS           +++F++               II++ L  L V     E+  
Sbjct: 150 YSLTYLLSNKQLYSYIIKAIEIFEEKCKSIEDKEVKDYLDIILQNLQMLHVF-RHCEEAC 208

Query: 194 LQKKSFPSIAEAFNIIHNPRKA-KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
           +  K   ++    + +  P K  ++ +  + A+++LA  EL+A QI+LL +R Q  K  G
Sbjct: 209 MPPKQSSNVKLINSRLPQPIKGLRNDDLYTNAKKQLAAKELIANQISLLNVRTQISKRQG 268

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
                   I   IL  + F  T  Q+  I++I  D S K  M+R+LQGDVGSGKTLVAL+
Sbjct: 269 NIYPKAVSIQANILNELGFELTSYQKQVIEEIECDQSDKIEMMRLLQGDVGSGKTLVALL 328

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            M   V  G QA +M P  +LA QHYEF  K  +NT I
Sbjct: 329 TMVNVVATGFQATLMVPTDLLANQHYEFFVKALKNTNI 366


>gi|295698371|ref|YP_003603026.1| ATP-dependent DNA helicase RecG [Candidatus Riesia pediculicola
           USDA]
 gi|291157197|gb|ADD79642.1| ATP-dependent DNA helicase RecG [Candidatus Riesia pediculicola
           USDA]
          Length = 187

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 106/177 (59%), Gaps = 2/177 (1%)

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            +S+VE    L E F+   I  IHG+M   DK  ++  F+    ++LI+TT++EVG+D+ 
Sbjct: 1   MKSLVEIDYKLRESFSKIKIGSIHGKMRAEDKRKIISDFRRNQIQILISTTIVEVGLDIP 60

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISS-CILLYHPPLSKNSYTRLSVLKNTEDG 617
           DA++++IEN E  GL+QLHQLRGRVGR     S CILLY   ++K +  RL++ K   +G
Sbjct: 61  DANLMVIENPERLGLSQLHQLRGRVGRNSNQESFCILLYSSSINKAARFRLNMFKKNLEG 120

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
             IA +DL  R  GE LGIKQ G P F IA  +    L    +  A+ I  +D +L+
Sbjct: 121 LQIARKDLSIRGPGENLGIKQKGHPSFKIANLKRDAQLFCQVKDVARCISKKDGNLS 177


>gi|330873192|gb|EGH07341.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 348

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 179/352 (50%), Gaps = 24/352 (6%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+++       ET   D+LF+ P  + DR     I  +   +   I
Sbjct: 9   VTALKGVGEAMAEKLARV-----GLET-LQDVLFHLPLRYQDRTRVVPIGALRPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   I L DGTG ++L F Y  +   K     G  +   G+ +  
Sbjct: 63  EGVVSG-ADVVMGKRRSLLIRLGDGTGVVSLRF-YHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
            + + + HP Y    + D   P+   +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 121 ASGLEIYHPEY-RAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240
           W+  +L +      + +A   +H+P    D E       W   A+ RLA++ELL  Q++ 
Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QG
Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           DVGSGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   ++V
Sbjct: 297 DVGSGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVVV 348


>gi|153810840|ref|ZP_01963508.1| hypothetical protein RUMOBE_01224 [Ruminococcus obeum ATCC 29174]
 gi|149833236|gb|EDM88318.1| hypothetical protein RUMOBE_01224 [Ruminococcus obeum ATCC 29174]
          Length = 164

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 65/141 (46%), Positives = 94/141 (66%), Gaps = 1/141 (0%)

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M+ F     ++L++TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE  S CI
Sbjct: 1   MEKFAANEIQVLVSTTVVEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEYQSYCI 60

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
            +      + +  RL +L  + DGF IA EDLK R  G++ GI+QSG  +F I       
Sbjct: 61  FIQGSD-EETTSKRLDILNKSNDGFYIAGEDLKLRGPGDLFGIRQSGDMEFRIGDIYNDS 119

Query: 654 SLLEIARKDAKHILTQDPDLT 674
           ++L+ A + A  IL+ DPDL+
Sbjct: 120 AILKSASEAAAEILSLDPDLS 140


>gi|315274587|ref|ZP_07869462.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120]
 gi|313615782|gb|EFR89035.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120]
          Length = 409

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 127/226 (56%), Gaps = 19/226 (8%)

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI--DEVIERLKVVLS 480
           VL +TATPIPRTL ++ LG  D+S I   PA R P++T +   N +   E IER    L+
Sbjct: 5   VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIER---ELA 61

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKN 539
              + Y++  ++E        S+ ++ + +      + +A  HG+M + + ESV+ SF  
Sbjct: 62  RDGQVYYLYNRVE--------SITQKADEISAMVPDARVATAHGQMGESELESVILSFLE 113

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+QLRGRVGR   I+    +Y   
Sbjct: 114 GEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKD 173

Query: 600 --LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
             L + +  RLS +K  TE   GF IA  DL  R  G ILG +Q G
Sbjct: 174 KILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGNILGAQQHG 219


>gi|207744279|ref|YP_002260671.1| atp-dependent dna helicase (partial sequence) protein [Ralstonia
           solanacearum IPO1609]
 gi|206595684|emb|CAQ62611.1| putative atp-dependent dna helicase (partial sequence) protein
           [Ralstonia solanacearum IPO1609]
          Length = 399

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 173/351 (49%), Gaps = 29/351 (8%)

Query: 42  IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ------HSSFQLQKRRPYKILLN 95
           +DL+ + P  + D      +  I+E      TG+ +Q       +   L+ RR   + + 
Sbjct: 57  VDLVLHLPMRYEDET---TLLTIAEAIARANTGWAAQVEGAVTRNEVALRPRRQLVVHIA 113

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP- 154
           D +GE+ L F       +K    EG ++ V G+++       MVHP  +   + D   P 
Sbjct: 114 DDSGELVLRFLNFYGSQVKQ-MAEGVRLRVRGEVRGGFFGAEMVHP-TVRAVAPDEPLPD 171

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP----SIAEAFNIIH 210
            +  VY    G++    +K I+ AL R P LPE +   L++    P    + AEA  ++H
Sbjct: 172 RLTPVYPSTAGVAQAYLRKAILNALGRTP-LPETLPDSLMRGPLAPLKLMAPAEAVRLLH 230

Query: 211 NPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPI----NVEGKI 261
            P    D     E T PA  R+ +DELLA Q++L   R Q  +     P+      +G +
Sbjct: 231 QPTPDVDEHSLVERTHPAWLRIKFDELLAQQLSL--KRAQAARRTRSAPVLRAGGAQGLL 288

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           A + +  +PF  T +Q    ++I  D+++   M R+LQGDVGSGKT++A +A   A++AG
Sbjct: 289 A-RFMAALPFKLTGAQGRVWEEIRADLARPYPMQRLLQGDVGSGKTVIAALAACQAIDAG 347

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            QA +MAP  +LA+QHY  +  + +   + +  + G++ +  + +A  R+A
Sbjct: 348 WQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAARVA 398


>gi|27262308|gb|AAN87435.1| transcription-repair coupling factor [Heliobacillus mobilis]
          Length = 388

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 138/254 (54%), Gaps = 25/254 (9%)

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV  + K+ Q      VL ++ATPIPRTL ++ +G  D+S I   P  R P
Sbjct: 1   MIIDEEQRFGVAHKEKIKQFKENVDVLTLSATPIPRTLHMSMVGLRDMSIIETPPEDRYP 60

Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           ++T ++  N   E+I E ++  L+ G + Y++            R+ VE  + +     +
Sbjct: 61  VQTYVVEYN--PELIREAIRRELNRGGQVYYV------------RNRVEDLDRIARDLMA 106

Query: 517 SI-----AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            I     A+ HG+M +   E +M  F  G   +L+ TT+IE G+D+ + + +I++ A+  
Sbjct: 107 MIPDVRVAVGHGKMREDQLEQIMLDFLEGEYDILVCTTIIETGLDIPNVNTLIVDGADLM 166

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN-TE--DGFLIAEEDLK 626
           GL+QL+QLRGRVGR   ++     Y     L++ +  RL  ++  TE   GF IA  DL+
Sbjct: 167 GLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLTEVAEKRLHAIREFTELGSGFKIAMRDLE 226

Query: 627 QRKEGEILGIKQSG 640
            R  G +LG +Q G
Sbjct: 227 IRGVGNLLGPEQHG 240


>gi|315928207|gb|EFV07524.1| helicase conserved C-terminal domain protein [Campylobacter jejuni
           subsp. jejuni DFVF1099]
 gi|315929756|gb|EFV08926.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni 305]
          Length = 266

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/268 (34%), Positives = 143/268 (53%), Gaps = 13/268 (4%)

Query: 399 IVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
           ++DEQHRFG  QR K   L ++  APH +  +ATPIPRTL +     ++ S I + P  +
Sbjct: 1   MIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLSMIQSELLNFSFIKQMPF-K 59

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           K I T  I      ++ E++K  +++  +   I P +    +  + S+ +       H+ 
Sbjct: 60  KDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLLSASDKIPYLSLEQAKEYWQSHY- 118

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + + HG+  D  K+ +++ F++    +L++TTV+EVGI +   S+I+I  AE  GLA 
Sbjct: 119 EKVFVTHGK--DKQKDEILERFRD-EGNILLSTTVVEVGISLPRLSMIVIVGAERLGLAT 175

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL- 634
           LHQLRGRVGR    S+C L       K   +RL    +T DGF IAE DLK R  G++L 
Sbjct: 176 LHQLRGRVGRVGLKSACYLYTK---LKEIPSRLKEFASTLDGFKIAELDLKNRLSGDLLD 232

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           G  Q G  +F        + +LE  +KD
Sbjct: 233 GFMQHG-NEFKFFDFSKDEEILEKVKKD 259


>gi|289810050|ref|ZP_06540679.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 197

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/186 (38%), Positives = 102/186 (54%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 5   QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 64

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 65  QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 124

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G 
Sbjct: 125 HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 184

Query: 443 IDISKI 448
            D+S I
Sbjct: 185 RDLSII 190


>gi|325114293|emb|CBZ49850.1| putative ATP-dependent DNA helicase [Neospora caninum Liverpool]
          Length = 1801

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/213 (38%), Positives = 115/213 (53%), Gaps = 17/213 (7%)

Query: 502  SVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            + V+RF  L +      I ++HGRM   +KE V+   + GT  LL+ATTV+EVGID+ +A
Sbjct: 1405 AAVQRFEELRKLLPEIRIRLLHGRMRAEEKEEVLSELRGGTVDLLVATTVVEVGIDIPNA 1464

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLSVLKNTED 616
            S+I+I++AE FGL QLHQLRGRVGR     S   +   PL+KN    +  R + +  T D
Sbjct: 1465 SVIVIDSAERFGLTQLHQLRGRVGRDARHPSFCFIILDPLNKNLDEKAMHRFAAIAATTD 1524

Query: 617  GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHILT-QDPD 672
            GF +AE D + R  G + G +Q G     + +         LLE A +DA HI+   D D
Sbjct: 1525 GFQLAETDAQLRGGGTLFGQQQHGQSDLWMIRGLKRSEQARLLEEATEDADHIVKLLDDD 1584

Query: 673  LTSVR---GQSIRILLYLYQYNEA-----FQFI 697
             T+ R   GQ +     +Y    A     F+F+
Sbjct: 1585 ATNSRCAVGQGVGRKHVVYSSEGAGERHHFRFV 1617



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 131/260 (50%), Gaps = 13/260 (5%)

Query: 159  VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
            +Y   +G+   + +  I E L R     E + + L +K+    +      +H P+   D 
Sbjct: 825  IYPSISGVPAKVLRAGI-ETLLRENSFAEVVPEFLRRKRGIERLDATLRALHYPQTPADI 883

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR----NIPFSPT 274
                 A+    Y  +L  Q+A  L  ++ + +         +  ++ILR    ++ F  T
Sbjct: 884  R---KAKRDFFYSTMLWLQLAKKLRTREVESQF---RGYASRAGEEILRAFYASLEFPLT 937

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             SQ  AI++I  DM     M R+LQGDVGSGKT VA +A+  +  AG QA ++AP   LA
Sbjct: 938  PSQLQAIEEIRADMESPRPMRRLLQGDVGSGKTAVAAVALLLSASAGHQAALLAPTAALA 997

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH   ++K+       V ++  + P   +   +  I  G A I +GTHAL QD + + +
Sbjct: 998  RQHQINLQKFLGPLGFHVHLLVSDAPD--KDATIRLINTGNAEITVGTHALLQDYVLFPR 1055

Query: 395  LILVIVDEQHRFGVQQRLKL 414
            L LV++DEQH+FGV QR KL
Sbjct: 1056 LGLVVIDEQHKFGVNQRWKL 1075



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 62/161 (38%), Gaps = 50/161 (31%)

Query: 423  VLLMTATPIPRTLVLTSLGDIDISKI----------TEKPAG------------------ 454
            VLLMTATPIPRT VL   GD+ +SK+           EK AG                  
Sbjct: 1208 VLLMTATPIPRTQVLLRYGDLKLSKLLAAEIRYSPGPEKRAGEGKLEGDTAHAAFRGTPC 1267

Query: 455  -----------------RKPIKTVIIPINRIDEVIERLKVV---LSEGKKAYWICPQI-- 492
                             R+ + T +I      EV E +K++   +S+ ++ +WICP +  
Sbjct: 1268 RQVGDRGRAKRSGAEPLRRAVATYLIDKRSEGEVGEMMKIIQDEISKTRQVFWICPLVDG 1327

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            E ++E   R    R     E      A    R +  D+E  
Sbjct: 1328 ERRREKAGRGRKRRSLGSQETGDGQTAENEARRNTRDEEEA 1368


>gi|255019510|ref|ZP_05291603.1| ATP-dependent DNA helicase RecG [Acidithiobacillus caldus ATCC
           51756]
 gi|254971042|gb|EET28511.1| ATP-dependent DNA helicase RecG [Acidithiobacillus caldus ATCC
           51756]
          Length = 739

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 113/464 (24%), Positives = 207/464 (44%), Gaps = 34/464 (7%)

Query: 45  LFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLND----GTGE 100
           L   P  + DR +      +       + G I Q  S    + R  K++L D    G+ +
Sbjct: 5   LLVRPLRYEDRRFPQPARHVDPGTTALLLGEIVQVRS----QSRFLKVVLRDLCDLGSAQ 60

Query: 101 ITLLFF-YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
               FF YR+     ++   G      GK+   +  + +  P  +      +  P+    
Sbjct: 61  FQATFFHYRRWHT--DLLTPGAAFAFLGKVGSFQGTVDLQQPAILDRTEIGMILPIYRRR 118

Query: 160 YSLPTG-LSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
             L T  +  ++   +   + + L  +   W+ + L Q  + P I +A   IH+P   +D
Sbjct: 119 GKLGTADIRAEILGVLAGASDADLASITSPWVREALAQHGTLP-IPQAVRTIHDP---ED 174

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
               + A+E LA  E+L    A L +R+  ++  G+ ++V      +    +PF+ +  Q
Sbjct: 175 PRVLARAQETLARMEVLERVEATLRLREARQQTPGVQVHVSADEMARFAAELPFALSPGQ 234

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIMAPIGIL 333
           ++A++ + + ++       +L G V SGKT +  IA  A V    E   + +I+AP  IL
Sbjct: 235 QAALESVREKLASPYPAKILLMGGVASGKTAICHIAARATVYGAREGRNKVLIVAPTQIL 294

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            QQ +     Y    +    ++ G      ++KAL      +A +  GTH LF   + + 
Sbjct: 295 CQQLFSTFSAYFPAVR--AHLVVGAK---GKKKALP-----EADVYFGTHGLFNRGLDWS 344

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           ++  VI DE+HRFG Q  +K        + + M+ATPIPR+L L   GD+D+ +I  +P 
Sbjct: 345 RVGTVIFDEEHRFGAQ--VKFGTVPMEANRIFMSATPIPRSLSLYLFGDMDLVRIAGRPH 402

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            R+ + T ++  +   E +  ++  L+ G+KA  +   I  ++E
Sbjct: 403 DRR-VVTRVLTRDEGREALAAVRDTLAAGRKAIVVYGAIRREEE 445



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 87/148 (58%), Gaps = 4/148 (2%)

Query: 496 KESNFR--SVVERFNSLHE-HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +ES +R  S +E+   + E HF   + ++HGRM+   K + +++F +G   L++AT+++E
Sbjct: 571 RESLYRAGSDLEKAVGVWERHFPGQVEVVHGRMNAAQKAAAIEAFASGAKPLIVATSIVE 630

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VGIDV     +++ NA+ FG A L QLRGRVGR  E   C+L+  P  + + Y RL    
Sbjct: 631 VGIDVKGVDCLVLANADRFGTASLVQLRGRVGRSGEAGLCLLVC-PSDTGSDYQRLQAFA 689

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSG 640
              D   +AE D ++R  G++ G  QSG
Sbjct: 690 EETDDLRLAEMDFRERGWGQVRGKAQSG 717


>gi|237840713|ref|XP_002369654.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii ME49]
 gi|211967318|gb|EEB02514.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii ME49]
 gi|221503338|gb|EEE29036.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii VEG]
          Length = 1042

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 101/181 (55%), Gaps = 8/181 (4%)

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           + +S   + V+RF  L +      I ++HGRM   +K  V+   + GT  LL+ATTV+EV
Sbjct: 638 QNDSKESAAVQRFEELRKLLPEIRIRLLHGRMKAEEKNEVLSELRGGTVDLLVATTVVEV 697

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLS 609
           GIDV +AS+I+I++AE FGL QLHQLRGRVGR     S   +   PL KN    +  R +
Sbjct: 698 GIDVPNASVIVIDSAERFGLTQLHQLRGRVGRDARHPSFCFIILDPLKKNLDEKAMHRFA 757

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI---AQPELHDSLLEIARKDAKHI 666
            +  T DGF +AE D + R  G + G +Q G     +    +      LLE A +D+ HI
Sbjct: 758 AIAATTDGFQLAETDARLRGGGTLFGRQQHGQSDLWMIHGLKRSEQTRLLEAATEDSDHI 817

Query: 667 L 667
           +
Sbjct: 818 V 818



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 140/269 (52%), Gaps = 7/269 (2%)

Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
           NS+ V+   +  +Y   +G+   + +  I E L R     E + + L +K+    +    
Sbjct: 50  NSEHVHVHKLMPIYPSISGVPAKILRAGI-ETLLRENSFAEVVPEFLRKKRGIERLDTTL 108

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKI 265
             +H+P+  +D      AR  L Y  +L  Q+A  L  ++ + +  G       +I Q  
Sbjct: 109 RALHHPQTLEDVR---KARRDLFYSTMLWLQLAKKLRTREVESQFRGYASRTGEEILQAF 165

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
             ++ FS T SQ  AI++I  DM     M R+LQGDVGSGKT VA +A+  +  AG QA 
Sbjct: 166 YASLNFSLTPSQLQAIEEIRADMESPRPMRRLLQGDVGSGKTAVAAVALLLSASAGHQAA 225

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA+QH   ++K+       V ++  ++P   +   +  I  G A I +GTHAL
Sbjct: 226 LLAPTAALARQHQINLQKFLGPLGFHVHLLVSDIPD--KDATIRLINTGNAEITVGTHAL 283

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
            QD + + +L LV++DEQH+FGV QR KL
Sbjct: 284 LQDYVLFPRLGLVVIDEQHKFGVNQRWKL 312



 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 21/26 (80%)

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKI 448
           VLLMTATPIPRT VL   GD+ +SKI
Sbjct: 443 VLLMTATPIPRTQVLLKYGDLKLSKI 468


>gi|221482870|gb|EEE21201.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii GT1]
          Length = 1042

 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 101/181 (55%), Gaps = 8/181 (4%)

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           + +S   + V+RF  L +      I ++HGRM   +K  V+   + GT  LL+ATTV+EV
Sbjct: 638 QNDSKESAAVQRFEELRKLLPEIRIRLLHGRMKAEEKNEVLSELRGGTVDLLVATTVVEV 697

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLS 609
           GIDV +AS+I+I++AE FGL QLHQLRGRVGR     S   +   PL KN    +  R +
Sbjct: 698 GIDVPNASVIVIDSAERFGLTQLHQLRGRVGRDARHPSFCFIILDPLKKNLDEKAMHRFA 757

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI---AQPELHDSLLEIARKDAKHI 666
            +  T DGF +AE D + R  G + G +Q G     +    +      LLE A +D+ HI
Sbjct: 758 AIAATTDGFQLAETDARLRGGGTLFGRQQHGQSDLWMIHGLKRSEQTRLLEAATEDSDHI 817

Query: 667 L 667
           +
Sbjct: 818 V 818



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 140/269 (52%), Gaps = 7/269 (2%)

Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
           NS+ V+   +  +Y   +G+   + +  I E L R     E + + L +K+    +    
Sbjct: 50  NSEHVHVHKLMPIYPSISGVPAKILRAGI-ETLLRENSFAEVVPEFLRKKRGIERLDTTL 108

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKI 265
             +H+P+  +D      AR  L Y  +L  Q+A  L  ++ + +  G       +I Q  
Sbjct: 109 RALHHPQTLEDVR---KARRDLFYSTMLWLQLAKKLRTREVESQFRGYASRTGEEILQAF 165

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
             ++ FS T SQ  AI++I  DM     M R+LQGDVGSGKT VA +A+  +  AG QA 
Sbjct: 166 YASLNFSLTPSQLQAIEEIRADMESPRPMRRLLQGDVGSGKTAVAAVALLLSASAGHQAA 225

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA+QH   ++K+       V ++  ++P   +   +  I  G A I +GTHAL
Sbjct: 226 LLAPTAALARQHQINLQKFLGPLGFHVHLLVSDIPD--KDATIRLINTGNAEITVGTHAL 283

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
            QD + + +L LV++DEQH+FGV QR KL
Sbjct: 284 LQDYVLFPRLGLVVIDEQHKFGVNQRWKL 312



 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 21/26 (80%)

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKI 448
           VLLMTATPIPRT VL   GD+ +SKI
Sbjct: 443 VLLMTATPIPRTQVLLKYGDLKLSKI 468


>gi|145629320|ref|ZP_01785119.1| transcription-repair coupling factor [Haemophilus influenzae
           22.1-21]
 gi|144978823|gb|EDJ88546.1| transcription-repair coupling factor [Haemophilus influenzae
           22.1-21]
          Length = 380

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/205 (37%), Positives = 120/205 (58%), Gaps = 19/205 (9%)

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNF 500
           D+S I+  PA R  IKT +    + D+++ R + +L E   G + Y++   +     ++ 
Sbjct: 8   DLSIISTPPARRLSIKTFV---RQNDDLVVR-EAILREILRGGQVYYLHNDV-----ASI 58

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            +  E+  +L     + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A
Sbjct: 59  ENTAEKLTTLVPE--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTA 116

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
           + IIIE A+HFGLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++  
Sbjct: 117 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLG 176

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSG 640
            GF++A  DL+ R  GE+LG +QSG
Sbjct: 177 AGFILATHDLEIRGAGELLGNEQSG 201


>gi|209524183|ref|ZP_03272733.1| ATP-dependent DNA helicase RecG [Arthrospira maxima CS-328]
 gi|209495274|gb|EDZ95579.1| ATP-dependent DNA helicase RecG [Arthrospira maxima CS-328]
          Length = 147

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/121 (47%), Positives = 86/121 (71%), Gaps = 1/121 (0%)

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           ++EVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   S C+L+     S  +  RL 
Sbjct: 1   MVEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGAHKSYCLLMSGSS-SPEAKQRLQ 59

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           VL+ ++DGF IAE D++ R  G++LG +QSG+P F +A       +LE+AR+ A+ ++ +
Sbjct: 60  VLEQSQDGFFIAEMDMQLRGPGQVLGTRQSGLPDFALASLVEDREVLELAREAAQKVIEK 119

Query: 670 D 670
           D
Sbjct: 120 D 120


>gi|223039442|ref|ZP_03609730.1| ATP-dependent DNA helicase RecG [Campylobacter rectus RM3267]
 gi|222879238|gb|EEF14331.1| ATP-dependent DNA helicase RecG [Campylobacter rectus RM3267]
          Length = 780

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/216 (37%), Positives = 119/216 (55%), Gaps = 14/216 (6%)

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           HV+  +ATPIPRTL +      + S + + P   K I T I+      E++  +K  +++
Sbjct: 542 HVVQFSATPIPRTLSMIQSSFAEFSFLRQMPF-EKHIHTQILQSADFGELLAHIKAQIAK 600

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           G++   I P +E  + SN++ + +  +    +F +++ + HG+  D +KE V+  F+   
Sbjct: 601 GRQIAVIYPLVESSESSNYQGLEDAQDFWRANF-ANVYVTHGK--DKEKEQVLREFRE-R 656

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL---LYHP 598
             +L++TTV+EVGI +   S I+I  AE  GLA LHQLRGRVGR      C L   L  P
Sbjct: 657 GDVLLSTTVVEVGISLPRLSTIVIVGAERLGLASLHQLRGRVGRNGGSGFCFLFTKLKSP 716

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           P      TRL     T DGF IAE DLK R+ G+IL
Sbjct: 717 P------TRLREFCETLDGFKIAEIDLKNRQSGDIL 746



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 15/155 (9%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+N+PF+PT  Q +AI D+  D   +  + R++ GDVGSGKTLV L A  +       A+
Sbjct: 220 LKNLPFAPTDDQLNAIADLRSDFGGEEAVRRVVMGDVGSGKTLVMLAAALSVYPR--PAL 277

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           IMAP  ILA+Q Y    +   +   I+ I +G+ P+               ++IIGTH L
Sbjct: 278 IMAPTSILAEQIYAEAVRLLPDFMRIMLIKSGDKPE-----------FDGVNLIIGTHVL 326

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              S+      LV++DEQHRFG  QR K+   A+ 
Sbjct: 327 LYQSLPAAP--LVMIDEQHRFGSNQREKINALASG 359


>gi|325914694|ref|ZP_08177035.1| RecG-like helicase [Xanthomonas vesicatoria ATCC 35937]
 gi|325539196|gb|EGD10851.1| RecG-like helicase [Xanthomonas vesicatoria ATCC 35937]
          Length = 655

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 129/457 (28%), Positives = 209/457 (45%), Gaps = 39/457 (8%)

Query: 192 DLLQKKSFP--SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
           +LL++   P  ++   F   H P   + +E +  A  RL   + LAG   L   +    K
Sbjct: 183 ELLEEVGCPGWNLRSLFLQAHRPHTPEYWEHSISALTRL---DALAG---LHRAKAGGPK 236

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ-GDVGSGKTL 308
            I  P ++     +K LR+   S T  Q +A+      +++K R  R++  GDVG+GK+L
Sbjct: 237 PISNPFHI--STVEKRLRSAGISLTDDQTNALAVYRAALARK-RPARVMSLGDVGTGKSL 293

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
              +  A   + GG+++ + P   LA Q  E  K +  + ++   ++T +   +      
Sbjct: 294 CIYMVAAGIADQGGRSMCLFPNSQLAVQMMEDFKHWAPDLEM--SLVTSDSDAS------ 345

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               + +A I+IGT AL    +   K+  V+VDEQHRF  +QR K   + T  H+   TA
Sbjct: 346 ---VNLEAPILIGTTALLTRKLP--KVDAVLVDEQHRFSREQREKKVGRHT--HLFEFTA 398

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T IPRT  L  +G  +  ++ +  A +     + I      ++   L   L  G +   +
Sbjct: 399 TCIPRTEALVRIGLYETVELRQTFAPKTIYTHLHIGREGRRDLFNMLLDDLKNGGRVLVV 458

Query: 489 CPQ-----------IEEKKESNFRSVVE-RFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            P+           +E + E+N    VE         F   +A I    +  +K + +D+
Sbjct: 459 YPRKNLDDVEAVEGMESRMETNPMHTVEGALPGWQAKFGDQVASITSDNTTEEKVATLDA 518

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G   +L+ TTV+EVG+++     I+I +   +GLA LHQLRGRV R      C LL 
Sbjct: 519 FADGRINVLVTTTVVEVGLNLPGLYRIVIVDPTRYGLATLHQLRGRVARKGGEGHCELLC 578

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
              L      RL     T DGF IA  DL+ R  G++
Sbjct: 579 DDKLKAEQQDRLDFFCATTDGFKIAARDLELRGAGDL 615


>gi|256751660|ref|ZP_05492535.1| TRCF domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749469|gb|EEU62498.1| TRCF domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 405

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 21/227 (9%)

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLS 480
           VL ++ATPIPRTL ++ +G  D+S +   P  R P++T ++  N   I + I R    + 
Sbjct: 15  VLTLSATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILR---EIG 71

Query: 481 EGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            G + Y++  ++   EK  S  + +V             +A+ HG+M +   E VM  F 
Sbjct: 72  RGGQVYFVYNRVNGIEKMASFVKDLVP---------GCRVAVAHGQMEESQLEKVMIDFL 122

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           NG   +L++TT+IE G+D+ + + II+ +A+  GL+QL+QLRGRVGR   ++     Y  
Sbjct: 123 NGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRK 182

Query: 599 P--LSKNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
              LS+ +  RL  +K  TE   GF IA  DL+ R  G +LG +Q G
Sbjct: 183 DKVLSEVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHG 229


>gi|160883180|ref|ZP_02064183.1| hypothetical protein BACOVA_01149 [Bacteroides ovatus ATCC 8483]
 gi|156111405|gb|EDO13150.1| hypothetical protein BACOVA_01149 [Bacteroides ovatus ATCC 8483]
          Length = 382

 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 155/337 (45%), Gaps = 35/337 (10%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           DL++Y P  +IDR     I EI      + + G I    +    ++R      +DGTG +
Sbjct: 34  DLIYYFPYKYIDRSRIYYIHEIDGNMPYIQLKGEILGFETIGEGRQRRLTAHFSDGTGVV 93

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            L++F     +L         I + GK      RI + HP     +   ++   ++  YS
Sbjct: 94  DLVWFQGIKYILGKYKLHEEYI-IFGKPTVFNGRINVAHPDVDKPDDLKLSSVGLQPYYS 152

Query: 162 LPTGLSVDLFKKIIVEALSRLPV------LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
               +         +E +    +      LPE +   LL +     + EA   IH P   
Sbjct: 153 TTEKMKRSFLNSHAIEKMMATVIQQIQEPLPETLSPKLLTEHHLMPLTEALWNIHFP--- 209

Query: 216 KDFEWTSP-----ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI----- 265
                T+P     A+ RL ++EL   Q+ +L   K  +K         G I +K+     
Sbjct: 210 -----TNPDVLRRAQYRLKFEELFYVQLNILRYAKDRQKR------YRGYIFEKVGDVFN 258

Query: 266 ---LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
               +N+PF  T +Q+  +K+I  D+    +M R+LQGDVGSGKTLVAL++M  A++ G 
Sbjct: 259 TFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRLLQGDVGSGKTLVALMSMLLALDNGY 318

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           QA +MAP  ILA QHYE IK+      I VE++TG++
Sbjct: 319 QACMMAPTEILANQHYETIKELLFGMDIRVELLTGSI 355


>gi|218507810|ref|ZP_03505688.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
           Brasil 5]
          Length = 318

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 108/195 (55%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ Q++AI  +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P
Sbjct: 124 PYDETEDQDNAIDAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAVVVP 183

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH++   +  +   + V+  +  +         + +A G+  I++GTHAL    
Sbjct: 184 TTLLARQHFKTFSERFRGLPVRVQQASRLVGAKDLALTKKEVAEGKTDIVVGTHALLGAG 243

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I++  L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT
Sbjct: 244 IKFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLIT 303

Query: 450 EKPAGRKPIKTVIIP 464
             P  R  ++T I P
Sbjct: 304 TPPVDRMAVRTFISP 318


>gi|95007372|emb|CAJ20592.1| DNA helicase, putative [Toxoplasma gondii RH]
          Length = 888

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 89/151 (58%), Gaps = 5/151 (3%)

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           + +S   + V+RF  L +      I ++HGRM   +K  V+   + GT  LL+ATTV+EV
Sbjct: 733 QNDSKESAAVQRFEELRKLLPEIRIRLLHGRMKAEEKNEVLSELRGGTVDLLVATTVVEV 792

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN----SYTRLS 609
           GIDV +AS+I+I++AE FGL QLHQLRGRVGR     S   +   PL KN    +  R +
Sbjct: 793 GIDVPNASVIVIDSAERFGLTQLHQLRGRVGRDARHPSFCFIILDPLKKNLDEKAMHRFA 852

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
            +  T DGF +AE D + R  G + G +Q G
Sbjct: 853 AIAATTDGFQLAETDARLRGGGTLFGRQQHG 883



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 170/360 (47%), Gaps = 24/360 (6%)

Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
           NS+ V+   +  +Y   +G+   + +  I E L R     E + + L +K+    +    
Sbjct: 318 NSEHVHVHKLMPIYPSISGVPAKILRAGI-ETLLRENSFAEVVPEFLRKKRGIERLDTTL 376

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-GIPINVEGKIAQKI 265
             +H+P+  +D      AR  L Y  +L  Q+A  L  ++ + +  G       +I Q  
Sbjct: 377 RALHHPQTLEDVR---KARRDLFYSTMLWLQLAKKLRTREVESQFRGYASRTGEEILQAF 433

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
             ++ FS T SQ  AI++I  DM     M R+LQGDVGSGKT VA +A+  +  AG QA 
Sbjct: 434 YASLNFSLTPSQLQAIEEIRADMESPRPMRRLLQGDVGSGKTAVAAVALLLSASAGHQAA 493

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA+QH   ++K+       V ++  ++P   +   +  I  G A I +GTHAL
Sbjct: 494 LLAPTAALARQHQINLQKFLGPLGFHVHLLVSDIPD--KDATIRLINTGNAEITVGTHAL 551

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLT-----QKATAPHVLLMTATPIPRTLVLTSL 440
            QD + + +    +  E  R G +Q   +      +      VLLMTATPIPRT VL   
Sbjct: 552 LQDYVLFPRHEKTV--ELDRGGERQHQGIDFPGGEEGGRMADVLLMTATPIPRTQVLLKY 609

Query: 441 GDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           GD+ +SKI  +E    R         + R     E      +   + +W+CP ++  +++
Sbjct: 610 GDLKLSKILASEIRHSRG--------MGRWAGEQEGTDERATAAFRVFWVCPLVDGVRDA 661


>gi|254441998|ref|ZP_05055475.1| DEAD/DEAH box helicase, putative [Octadecabacter antarcticus 307]
 gi|198250560|gb|EDY74891.1| DEAD/DEAH box helicase, putative [Octadecabacter antarcticus 307]
          Length = 242

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 92/146 (63%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + L L R Q ++  G     +G    K+L  + F PT +Q  A  +I +DM++ +RM R+
Sbjct: 1   MTLALARAQARRSKGRMTVGDGAKQAKVLAALGFFPTGAQVRATAEIAEDMAKPHRMNRL 60

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL+A+  AVEAGGQ V+MAP  ILA+QH E ++   +   +++E++TG
Sbjct: 61  LQGDVGSGKTLVALMALLTAVEAGGQGVMMAPTEILARQHLEGLRPLAEGAGVVLELLTG 120

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTH 383
                 RR  L  +A G  HI++GTH
Sbjct: 121 RDKGGERRAKLAALAAGDIHILVGTH 146


>gi|153830993|ref|ZP_01983660.1| transcription-repair coupling factor [Vibrio cholerae 623-39]
 gi|148873518|gb|EDL71653.1| transcription-repair coupling factor [Vibrio cholerae 623-39]
          Length = 381

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/207 (38%), Positives = 114/207 (55%), Gaps = 23/207 (11%)

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIE--EKKES 498
           D+S I   PA R  IKT +      D VI   + VL E   G + Y++  Q+E  +K  +
Sbjct: 3   DLSIIATPPARRLAIKTFVRQSE--DSVIR--EAVLREIMRGGQVYFLHNQVETIDKVAA 58

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           +   +V           + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV 
Sbjct: 59  DLEKLVPE---------ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVP 109

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
            A+ II++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED
Sbjct: 110 TANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLED 169

Query: 617 ---GFLIAEEDLKQRKEGEILGIKQSG 640
              GF +A  DL+ R  GE+LG +QSG
Sbjct: 170 LGAGFTLATHDLEIRGAGELLGEEQSG 196


>gi|145629319|ref|ZP_01785118.1| transcription-repair coupling factor [Haemophilus influenzae
           22.1-21]
 gi|144978822|gb|EDJ88545.1| transcription-repair coupling factor [Haemophilus influenzae
           22.1-21]
          Length = 765

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 95/172 (55%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q + + G     + +  Q+     PF  T  QE AI  ++ DM Q   M R++ 
Sbjct: 570 LLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVC 629

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++   
Sbjct: 630 GDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFK 689

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
               +++ LE +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+
Sbjct: 690 TAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQK 741


>gi|218659488|ref|ZP_03515418.1| transcription-repair coupling factor [Rhizobium etli IE4771]
          Length = 248

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 18/244 (7%)

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           D+     M R++ GDVG GKT VAL A   A   G Q  I+ P  +LA+QH++   +  +
Sbjct: 11  DLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAIVVPTTLLARQHFKTFSERFR 70

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              + ++  +  +         + +A G+  I++GTHAL    I++  L L+++DE+  F
Sbjct: 71  GLPVRIQQASRLVGAKELALTKKEVAEGKTDIVVGTHALLGAGIKFANLGLLVIDEEQHF 130

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T I P +
Sbjct: 131 GVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFD 190

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-----IAII 521
            +  + E L      G +++++CP++ +               +H    S      +A+ 
Sbjct: 191 SL-VIRETLMREHYRGGQSFYVCPRLAD------------LADVHAFLQSDVPELKVAVA 237

Query: 522 HGRM 525
           HG+M
Sbjct: 238 HGQM 241


>gi|331089330|ref|ZP_08338231.1| hypothetical protein HMPREF1025_01814 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330405511|gb|EGG85043.1| hypothetical protein HMPREF1025_01814 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 383

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 120/210 (57%), Gaps = 15/210 (7%)

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEK 495
           ++ +G  D+S + E P  R PI+T ++  N  DE++ E +   L+   + Y++  ++   
Sbjct: 1   MSLIGIRDMSVLEEAPNERMPIQTYVMEYN--DEMVREAITRELARDGQVYYVYNRV--- 55

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             ++   V  R  SL     +++A  HG+M + + E +M  F NG   +L++TT+IE G+
Sbjct: 56  --NDIADVAGRIQSLVPD--ANVAFAHGQMKERELEDIMYDFINGDIDVLVSTTIIETGL 111

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN 613
           D+ +A+ +II++A+ FGL+QL+QLRGRVGR   ++   LLY     L + +  RLS ++ 
Sbjct: 112 DIPNANTMIIQDADRFGLSQLYQLRGRVGRSNRMAYAFLLYQRDKLLKEVAEKRLSAIRE 171

Query: 614 TED---GFLIAEEDLKQRKEGEILGIKQSG 640
             D   G  IA  DL+ R  G +LG  QSG
Sbjct: 172 FTDLGSGIKIAMRDLEIRGAGNLLGEAQSG 201


>gi|253759905|ref|XP_002488952.1| hypothetical protein SORBIDRAFT_1262s002010 [Sorghum bicolor]
 gi|241947057|gb|EES20202.1| hypothetical protein SORBIDRAFT_1262s002010 [Sorghum bicolor]
          Length = 282

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 108/227 (47%), Gaps = 69/227 (30%)

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           EQ RFGV QR +                                SKIT+ P GR+PI+T+
Sbjct: 1   EQQRFGVVQRGRFN------------------------------SKITDLPPGRQPIETL 30

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            +                              E  +  F +V   F    E +     ++
Sbjct: 31  AL------------------------------EGNDVGFETV---FQKKFEGYP--CGLL 55

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HGRM   +KE  + SF +G  ++L++T VIE+G+DV DAS++I+ NA+ FG+AQLHQLRG
Sbjct: 56  HGRMRSNEKEETLSSF-SGETRILLSTQVIEIGVDVPDASMMIVMNAKRFGIAQLHQLRG 114

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           RVGRGE  S CI L     + ++  RL VL+ + DGF +A  DL  R
Sbjct: 115 RVGRGERKSRCIFLAS---TSSTLPRLKVLEKSSDGFYLANADLLLR 158


>gi|145641877|ref|ZP_01797452.1| ATP-dependent DNA helicase [Haemophilus influenzae R3021]
 gi|145273499|gb|EDK13370.1| ATP-dependent DNA helicase [Haemophilus influenzae 22.4-21]
          Length = 310

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 152/304 (50%), Gaps = 20/304 (6%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI   G  N     DLLF+ P  + DR     I+ +  E+  T
Sbjct: 10  PLTSLSGVGAAISNKLAKI---GIQN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q       +R    + L+DGT +I L FF     M +N F  G ++   G++K+
Sbjct: 64  IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQAGVRVKAFGEVKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            ++   + HP Y  +  N+  V    +  +Y    GL  +  +K+  +AL+   +L +  
Sbjct: 122 GRHMPEIHHPEYQIVRDNAPIVLEETLTPIYPTTEGLKQNSLRKLTDQALA---LLDKVQ 178

Query: 190 EKDLLQKKSFP---SIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLL 242
             ++L  +  P   S+ EA  ++H P      E       PA+ RL ++ELLA  +A+  
Sbjct: 179 IAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQLRLIFEELLAHNLAMQK 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   +P++ +  +  + L  +PF PT +Q+  + DI QD+ +   M+R++QGDV
Sbjct: 239 VRLGTQQFSALPLHYQTDLKLRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDV 298

Query: 303 GSGK 306
           GSGK
Sbjct: 299 GSGK 302


>gi|320093932|ref|ZP_08025767.1| hypothetical protein HMPREF9005_0379 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319979144|gb|EFW10652.1| hypothetical protein HMPREF9005_0379 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 180

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/175 (38%), Positives = 103/175 (58%), Gaps = 8/175 (4%)

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GR     K +VM  F +G   +L+ATTV+EVG+DV +A++++I +A+ FGL+ LHQLRGR
Sbjct: 5   GRTPGARKAAVMADFASGVTPVLVATTVVEVGVDVPEATLMVIIDAQQFGLSTLHQLRGR 64

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGR    S C+ ++    ++    RL    +T DGF +AE DL+ RKEG++LG  QSG  
Sbjct: 65  VGRSSRESLCVAVHRHGPTEAGERRLRAFASTTDGFELAEADLRLRKEGDVLGAGQSGTA 124

Query: 643 KFLIAQPELHDS-LLEIARKDAKHILTQDPD-------LTSVRGQSIRILLYLYQ 689
             L       D  ++  AR  A+ ++ QDP        L ++R Q+ R L ++++
Sbjct: 125 THLEHLSVRRDGAIIRDARAAAERLIDQDPSLAAHPQVLAALREQAPRDLTWIHR 179


>gi|58700213|ref|ZP_00374704.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58533272|gb|EAL57780.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 115

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 76/115 (66%)

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           +  +A G  +I+IGTHALFQ ++ +  L L ++DEQ RFGV QR +L  K     +L +T
Sbjct: 1   MNELASGVLNIVIGTHALFQANVTFKNLGLAVIDEQQRFGVMQRNRLVGKGENADILFVT 60

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           ATPIPRTL     GD++ S + EKP  R PIKTV + I+R+ +VIE+LK  ++ G
Sbjct: 61  ATPIPRTLQQAMYGDVECSILKEKPKSRLPIKTVTMNISRVPDVIEKLKGAINRG 115


>gi|257413333|ref|ZP_05591610.1| ATP-dependent DNA helicase RecG [Roseburia intestinalis L1-82]
 gi|257203891|gb|EEV02176.1| ATP-dependent DNA helicase RecG [Roseburia intestinalis L1-82]
          Length = 135

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/111 (51%), Positives = 76/111 (68%), Gaps = 1/111 (0%)

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++IENAE FGLAQLHQLRGRVGRG+  S CI++ +   SKNS  RL +L  + DGF IA 
Sbjct: 1   MMIENAERFGLAQLHQLRGRVGRGDVQSYCIMV-NASDSKNSMKRLDILNKSNDGFKIAS 59

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           EDLK R  G+  GI+QSG  +FL+A      S+L+ A ++ + +L  DP+L
Sbjct: 60  EDLKLRGPGDFFGIRQSGEMQFLLADIYQDASVLQQASEEVQDLLATDPEL 110


>gi|328479858|gb|EGF48947.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus MTCC 5462]
          Length = 116

 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 53/115 (46%), Positives = 76/115 (66%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA I + AAV AG QA +M P  +LA+QH+  ++    +  + + 
Sbjct: 1   MNRLLQGDVGSGKTIVAAIVLYAAVTAGYQAALMVPTEVLAEQHFAKLEALFADFPVKLG 60

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           ++TG+     RR+ L  +  G  ++IIGTHAL Q  + +  L LV++DEQHRFGV
Sbjct: 61  LLTGSTTAKKRREMLAELRDGTLNLIIGTHALIQKGVDFKALGLVVIDEQHRFGV 115


>gi|291533463|emb|CBL06576.1| Transcription-repair coupling factor (superfamily II helicase)
           [Megamonas hypermegale ART12/1]
          Length = 391

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 119/215 (55%), Gaps = 25/215 (11%)

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEK 495
           ++ +G  D+S I   P  R P++T +I  N  D +I + +K  +  G + Y+I  +    
Sbjct: 1   MSLVGARDMSVIETPPQERFPVQTYVIENN--DMIIKDAIKREIRRGGQVYFIYNR---- 54

Query: 496 KESNFRSVVERFNSLHEHFTS-----SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   VE  + ++ H  S      I I HG+MS+ + E  M +F  G   +L+AT++
Sbjct: 55  --------VETIDKMYLHLLSMLPDVKIGIAHGQMSEEELERAMLNFYEGKYDILLATSI 106

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL 608
           IE G+DV +A+ III +A++FGL+QL+Q+RGRVGR ++++    +Y     LS+ +  RL
Sbjct: 107 IENGLDVSNANTIIIYDADYFGLSQLYQMRGRVGRSKQMAFAYFIYQKDKILSEMAEKRL 166

Query: 609 SVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
             +K       GF IA  DL+ R  G++LG +Q G
Sbjct: 167 QAIKEFAQLGSGFKIAMRDLEIRGAGDLLGSQQHG 201


>gi|256751659|ref|ZP_05492534.1| transcription factor CarD [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749468|gb|EEU62497.1| transcription factor CarD [Thermoanaerobacter ethanolicus CCSD1]
          Length = 765

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 113/226 (50%), Gaps = 15/226 (6%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFK 248
           DL+QK   P+         NP K       EW    R+     E LA  +  L  ++Q  
Sbjct: 551 DLVQKYVGPT--------DNPPKLNKLGGSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMV 602

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  G   + +    ++     P+  T+ Q   IK+I +DM +   M R+L GDVG GKT 
Sbjct: 603 K--GHAFSPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTE 660

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           VAL A   AV  G Q   + P  ILA QHY  FI+++ +   + +E+++       + K 
Sbjct: 661 VALRAAFKAVADGKQVAFLCPTTILAYQHYTNFIERFKE-FPVKIEMLSRFRTPKEQSKI 719

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++ +A G   II+GTH L Q+ I++  L L+I+DE+ RFGV  + K
Sbjct: 720 IKELAEGNIDIIVGTHRLLQNDIKFKDLGLLIIDEEQRFGVVHKEK 765


>gi|213492461|gb|ACJ47233.1| RecG-like helicase [Streptococcus suis]
 gi|220682834|gb|ACL80317.1| RecG-like helicase [Streptococcus suis]
          Length = 99

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/101 (54%), Positives = 73/101 (72%), Gaps = 2/101 (1%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VA +AM AAV AG QA +M P  ILA+QH+E +++     ++ + ++TG
Sbjct: 1   LQGDVGSGKTVVAGLAMVAAVTAGMQAAMMVPTEILAEQHFESLRQLF--PELSIALLTG 58

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            M  A RR ALE I+ GQ  II+GTHAL Q+S+ Y+KL LV
Sbjct: 59  GMKVAERRAALEAISSGQVDIIVGTHALIQESVTYHKLGLV 99


>gi|315274585|ref|ZP_07869461.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120]
 gi|313615787|gb|EFR89039.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120]
          Length = 770

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 106/198 (53%), Gaps = 2/198 (1%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +K  G   + + ++ ++     P+  T+ Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAEK--GYAFSADDEMQREFEDAFPYQETEDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQHY
Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHY 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQ 416
           IVDE+ RFGV  + K+ Q
Sbjct: 751 IVDEEQRFGVTHKEKIKQ 768


>gi|219559004|ref|ZP_03538080.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis T17]
          Length = 345

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 156/334 (46%), Gaps = 41/334 (12%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEE--RIVTITGYISQHSSFQLQK---RRPYKILLNDG 97
           DLL ++P S+++   R  I +   E    +TI   I+   SF ++K   R+  +I +  G
Sbjct: 6   DLLRHYPRSYVEGAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNRKCLRITVGGG 65

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
             ++T  FF    + +     +  K+ ++G++   K  + + HP ++  +S D       
Sbjct: 66  RNKVTATFF--NADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSPDGKNHGTR 123

Query: 158 AVYSLPTGLSVDLFKKIIVEALSR--LPVLP------EW-IEK------DLLQKKSFPSI 202
           ++ S+    S  +  +++VE   R   P+ P       W I K      D+L +   P  
Sbjct: 124 SLKSIADA-SKAISGELVVEEFERRFFPIYPASTKVQSWDIFKCVRQVLDVLDRVDDPLP 182

Query: 203 AE------------AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           AE            A   IH    A+       ARERL +DE +  Q AL+  R     E
Sbjct: 183 AELRAKHGLIPEDEALRAIH---LAESQSLRERARERLTFDEAVGLQWALVARRHGELSE 239

Query: 251 IGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTL 308
            G     +   +A ++LR +PF  T  Q   + D+L D    NR L R+LQG+VGSGKT+
Sbjct: 240 SGPSAAWKSNGLAAELLRRLPFELTAGQREVL-DVLSDGLAANRPLNRLLQGEVGSGKTI 298

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           VA++AM   V+AG Q  ++AP  +LA QH   I+
Sbjct: 299 VAVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIR 332


>gi|322516062|ref|ZP_08068999.1| DNA helicase RecG [Streptococcus vestibularis ATCC 49124]
 gi|322125477|gb|EFX96823.1| DNA helicase RecG [Streptococcus vestibularis ATCC 49124]
          Length = 348

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 169/368 (45%), Gaps = 38/368 (10%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  +G G K +   +K+      +     DLL Y P  + D   +  I E+ +  
Sbjct: 8   LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYEDFKSK-SIFELMDGE 60

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYR-----KTEMLKNVFFEGR 121
              ITG +   ++ Q    KR      +  G   I + FF +     K EM       G 
Sbjct: 61  KAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAISFFNQPYLVDKIEM-------GA 113

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           ++ + GK  + K+ +  +       +        ++ VY +  G+S     K I  A   
Sbjct: 114 EVAIFGKWDQKKSAVTGMKVSAQVEDD-------MQPVYHVTQGVSQAQLIKAIKAAFDS 166

Query: 182 --LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             L +L E + + L+ K       EA + +H P   KD      A  R  ++EL   Q+ 
Sbjct: 167 GALNLLEESLPQVLMDKYRLMGRQEAVHAMHFP---KDLAEYKQALRRTKFEELFYFQMN 223

Query: 240 LLLMRKQFKKEI-GIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           L +++ + K E  G+ I   E KI  KI   +PF  T++Q+ ++ +IL DM     M R+
Sbjct: 224 LQVLKAENKSETNGLAIAYDEAKIKSKI-AELPFPLTEAQQRSLSEILADMKSGAHMNRL 282

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT++A +AM  A  AG Q+ +M P  ILA+QHY+  +      ++ V ++T 
Sbjct: 283 LQGDVGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSFQGLF--PELEVALLTS 340

Query: 358 NMPQAHRR 365
            M  A ++
Sbjct: 341 GMKAADKK 348


>gi|330984017|gb|EGH82120.1| RecG-like helicase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 777

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 146/313 (46%), Gaps = 27/313 (8%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
           F  +      +H PR  +D E     AR   AY  +   Q A    RK    E  IP++ 
Sbjct: 208 FNDLKHLLMTLHIPRTPQDLERAMLSARRMNAYYGIRKAQNAT--TRKPVP-ESAIPVDR 264

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +  + ++++   PF+PTK Q  AI DI+ D++    M R+L  DVG+GKT+   I  A A
Sbjct: 265 D--LIRQLVEQHPFTPTKDQRQAIWDIICDLANDVPMDRLLSADVGNGKTMAYGIPAAYA 322

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
              G   VI+ P   LA Q  + I+  T   QI V ++T    Q+            Q  
Sbjct: 323 ASNGKNVVILLPTEPLAGQVEKNIR--TWYPQINVHLVTAGFTQSVE----------QGS 370

Query: 378 IIIGTHALFQ--DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           +++GT A+    +    +K+   + DEQ + G  QR  L    T  H+L  TATPIPRT+
Sbjct: 371 VLVGTTAILAWLEKHPEWKVDFAVTDEQQKMGTVQRESLNNLGT--HILEATATPIPRTM 428

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE---VIERLKVVLSEGKKAYWICPQI 492
                G+  I+ I + P  +K I T ++  N + E    ++ L   +++G +   I P +
Sbjct: 429 AQALFGNKKITLIDDCPVVKK-ISTKLVG-NTLAEKRTAMDILYQTVADGGRVAVIYPLV 486

Query: 493 EEKKESNFRSVVE 505
            EK    + + VE
Sbjct: 487 AEKMAYVYHAKVE 499



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 9/167 (5%)

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           N +++++      +   + +A+IHGR    +K  ++D    G   +L+ATT+IE+GID+ 
Sbjct: 586 NKKTIIQGAEKWEKIKPNRVAVIHGRSKRDEKVEIIDLMNRGDADVLLATTLIEIGIDIA 645

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVLKNTE 615
           D   + + +A++ G   LHQLRGRV R     + +++   PL +    +  RL++L    
Sbjct: 646 DLRALAVIDADYLGAYTLHQLRGRVARNGGEGAFVMMASAPLDELDDKALDRLNLLVKFT 705

Query: 616 DGFLIAEEDLKQRKEGEI--LGIKQSGMPKFLIAQ----PELHDSLL 656
            G  IA  D++QR  G +   G  Q G    L AQ    P+  DS L
Sbjct: 706 RGSDIALHDMEQRGFGNLDAGGKAQKGFDDGLFAQLKLSPKEMDSFL 752


>gi|261883984|ref|ZP_06008023.1| ATP-dependent DNA helicase RecG [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 134

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/109 (49%), Positives = 72/109 (66%), Gaps = 3/109 (2%)

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++I +AE FGLAQLHQLRGRVGR E  S CILL  P  ++    R+  +  T DGF++AE
Sbjct: 1   MVIYDAERFGLAQLHQLRGRVGRSEHQSYCILLADPK-TEEGKERMISMTETNDGFVLAE 59

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQD 670
           +DL+ R  G+  G KQSG+P+F +A   +HD   LE AR DA+ +L  D
Sbjct: 60  KDLELRGPGDFFGTKQSGLPEFKVAD-LVHDYRALETARNDAEKLLASD 107


>gi|312866818|ref|ZP_07727031.1| putative transcription-repair coupling factor [Streptococcus
           parasanguinis F0405]
 gi|311097601|gb|EFQ55832.1| putative transcription-repair coupling factor [Streptococcus
           parasanguinis F0405]
          Length = 764

 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 3/179 (1%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           I L   R Q +   G   + + +  +   ++ P+  T  Q  +I++I +DM     M R+
Sbjct: 580 IKLYAERSQLE---GFAYSSDDENQEAFEQDFPYIETDDQLRSIEEIKKDMESNRPMDRL 636

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY   K+  ++  + V +++ 
Sbjct: 637 LVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYANFKERFESFAVEVAVLSR 696

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
              +A +++ LE++  G+  IIIGTH L    + +  L L+++DE+ RFGV+ +  L +
Sbjct: 697 FQSKAEQKETLEKLKKGRVDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKE 755


>gi|218670941|ref|ZP_03520612.1| ATP-dependent DNA helicase RecG [Rhizobium etli GR56]
          Length = 141

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/141 (39%), Positives = 80/141 (56%), Gaps = 1/141 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K++      + R IDLLF+ P S IDR  +P 
Sbjct: 1   MRPAILDPLFSPISGLPGVGPKIAELLVKLLGRETPEDCRVIDLLFHAPFSLIDRRNQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 61  IARAPQGAIVTITARVDRHQVPPRGKINVPYRVFLHDETGELTLVFFRGQAAWLEKQLPI 120

Query: 120 GRKITVTGKIKKLKNRIIMVH 140
             ++TV+GK+     R  MVH
Sbjct: 121 DAEVTVSGKVDWFNGRASMVH 141


>gi|145636877|ref|ZP_01792542.1| transcription-repair coupling factor [Haemophilus influenzae
           PittHH]
 gi|145269958|gb|EDK09896.1| transcription-repair coupling factor [Haemophilus influenzae
           PittHH]
          Length = 290

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 73/109 (66%), Gaps = 5/109 (4%)

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+ +T+IE GIDV  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL 
Sbjct: 3   FYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLT 62

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
            PP  ++K++  RL  L+N ++   GF++A  DL+ R  GE+LG +QSG
Sbjct: 63  PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG 111


>gi|213582897|ref|ZP_03364723.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 98

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/94 (51%), Positives = 62/94 (65%), Gaps = 5/94 (5%)

Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           FGV QRL L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV
Sbjct: 1   FGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTV 60

Query: 462 IIPINRIDEVIERLK-VVLSEGKKAYWICPQIEE 494
            IP  R  E+I+R++    +EG++AYW+C  IEE
Sbjct: 61  AIPDTRRHEIIDRVRNACTTEGRQAYWVCTLIEE 94


>gi|298708154|emb|CBJ30495.1| RecG-like helicase [Ectocarpus siliculosus]
          Length = 435

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 120/246 (48%), Gaps = 16/246 (6%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P    +GVG + +  L+K+        T   DLL++ P+  +DR    +++ + E  + T
Sbjct: 193 PEDALKGVGPRKAEQLAKL------GVTTVADLLWHLPTGMVDRRETSRVANLVEGEVAT 246

Query: 72  ITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           +   + +  S   +KR P   ++   D   +   +  +  + + KN +  G    V+GK+
Sbjct: 247 LLLKVVKVQS-DPRKRSPRITRVHCVDVVEDKIDIVMFGGSWLCKN-YEPGETKVVSGKV 304

Query: 130 --KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-- 185
              K    ++M  P  +   +      +I+  Y L  GLS    + +I  AL +L  +  
Sbjct: 305 TMDKYSGALVMNSPEVVAPAADLEKVLVIQPTYPLTAGLSGSSLRSVIALALDQLEGVTQ 364

Query: 186 --PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
             PEWI+++ +++  +PS+ EA +  H+P++ +D   +   R RLAYDELLA QI L L 
Sbjct: 365 FPPEWIDQETMREHGWPSLREALSAAHSPQQEEDLRPSGATRSRLAYDELLASQIVLALR 424

Query: 244 RKQFKK 249
           R+Q  +
Sbjct: 425 RRQNSR 430


>gi|163785122|ref|ZP_02179825.1| ATP-dependent DNA helicase RecG [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879607|gb|EDP73408.1| ATP-dependent DNA helicase RecG [Hydrogenivirga sp. 128-5-R1-1]
          Length = 150

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 87/149 (58%), Gaps = 17/149 (11%)

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL----YHPPLSKNS--------YTRLS 609
           +++IE A  FGL+Q+HQLRGR+GRG+    C L+       PL   S          RL 
Sbjct: 1   VMVIEEAHRFGLSQIHQLRGRIGRGKYEGYCFLIAPSYLRRPLEDTSKENQRLKTLYRLK 60

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE--LHDSLLEIARKDAKHIL 667
           VL  T DGF IAEEDLK R  G+++G  QSG   F IA  +  +   +++ A+K+A++I+
Sbjct: 61  VLVKTSDGFKIAEEDLKLRGTGDLVGTAQSGKLNFSIADLDRPIDMKIMKFAKKEAQYII 120

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
            +DP+LT  R   +R LL+  +Y E F+ 
Sbjct: 121 EKDPNLT--RYPQLRQLLF-DKYGERFEL 146


>gi|146317998|ref|YP_001197710.1| RecG-like helicase [Streptococcus suis 05ZYH33]
 gi|145688804|gb|ABP89310.1| RecG-like helicase [Streptococcus suis 05ZYH33]
          Length = 135

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 79/121 (65%), Gaps = 6/121 (4%)

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++I +A+ FGL+ LH LRGRVGRG + S  +L+ +P  +++   R+ ++  T DGF
Sbjct: 3   NATVMVIMDADRFGLSLLHHLRGRVGRGHKQSYAVLVANPK-TESGKERMKIMTETTDGF 61

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT-----QDPDL 673
           ++AE DLK R  GEI G +QSG+P+F +A       +LE AR+ A  I++     +DP+ 
Sbjct: 62  ILAEADLKMRGSGEIFGTRQSGLPEFQVANIIEDYPILEEARRVASQIVSVENWQEDPNW 121

Query: 674 T 674
           +
Sbjct: 122 S 122


>gi|154424227|gb|ABS81999.1| ATP-dependent DNA helicase [Lactobacillus casei]
          Length = 114

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 71/113 (62%)

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA I + AAV AG QA +M P  +LA+QH+  + K  ++  + + ++TG+     RR+ L
Sbjct: 1   VAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTSTKRRRELL 60

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +  G+ ++IIGTHAL Q  + ++ L LV++DEQHRFGV QR  L +K   P
Sbjct: 61  SELRDGRLNLIIGTHALIQKGVDFHALGLVVIDEQHRFGVNQRKILQEKGQKP 113


>gi|154424219|gb|ABS81995.1| ATP-dependent DNA helicase [Lactobacillus casei]
 gi|154424221|gb|ABS81996.1| ATP-dependent DNA helicase [Lactobacillus casei]
 gi|154424223|gb|ABS81997.1| ATP-dependent DNA helicase [Lactobacillus casei]
 gi|154424225|gb|ABS81998.1| ATP-dependent DNA helicase [Lactobacillus casei]
 gi|154424229|gb|ABS82000.1| ATP-dependent DNA helicase [Lactobacillus casei]
 gi|154424231|gb|ABS82001.1| ATP-dependent DNA helicase [Lactobacillus casei]
 gi|154424233|gb|ABS82002.1| ATP-dependent DNA helicase [Lactobacillus casei]
 gi|154424235|gb|ABS82003.1| ATP-dependent DNA helicase [Lactobacillus casei]
          Length = 114

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 71/113 (62%)

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA I + AAV AG QA +M P  +LA+QH+  + K  ++  + + ++TG+     RR+ L
Sbjct: 1   VAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTSTKKRRELL 60

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +  G+ ++IIGTHAL Q  + ++ L LV++DEQHRFGV QR  L +K   P
Sbjct: 61  SELRDGRLNLIIGTHALIQKGVDFHALGLVVIDEQHRFGVNQRKILQEKGQKP 113


>gi|309805527|ref|ZP_07699572.1| ATP-dependent DNA helicase RecG family protein [Lactobacillus iners
           LactinV 09V1-c]
 gi|308165178|gb|EFO67416.1| ATP-dependent DNA helicase RecG family protein [Lactobacillus iners
           LactinV 09V1-c]
          Length = 353

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 152/344 (44%), Gaps = 40/344 (11%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  LS++            DLLFY P  +      P ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALSQL------KIKTIYDLLFYFPRRYDSLETFP-LNELK 58

Query: 66  EERIVTITGYISQH---SSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I      S +     R  +K+ ++    +I ++ F+ +   LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDH---DIIMVNFFNQP-WLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI------EAVYSLPTGLSVDLFKKII 175
            I + GK              Y+  +     + ++      E VYSL + +        I
Sbjct: 115 DIAIYGK--------------YVLASQTLSAYKIVLKEEGFEPVYSLNSHIKQKKLVSFI 160

Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            +A+ + LP LPE I + L  K     +      +H P   KD +    A+    + E  
Sbjct: 161 NQAIEKYLPQLPEVIPQYLRDKYKLLDVQSMIIQMHQP---KDLQQVKVAQRTAIFLEFF 217

Query: 235 AGQIAL-LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q+ L  L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   R
Sbjct: 218 VFQLQLSQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKR 277

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           M R+LQGDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH
Sbjct: 278 MNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQH 321


>gi|326532884|dbj|BAJ89287.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 412

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 99/180 (55%), Gaps = 6/180 (3%)

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286
           +LA  +++   + L L R + ++    P   + +   +     P+ PT  Q  A  DI  
Sbjct: 225 KLAVQKMVVNLMELYLQRMRQRR----PPYRKPEAMDQFASEFPYEPTPDQNQAFIDIEN 280

Query: 287 DMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-KKY 344
           D++++   M R++ GDVG GKT VA+ A+   V  G QA+++AP  ILA QH++ + +++
Sbjct: 281 DLTERETPMDRLICGDVGFGKTEVAMRAIFIVVSTGYQAMVLAPTVILANQHFDVMSERF 340

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
           +    I V I +G   +  + + + +I +G   II+GTHAL  + + Y  L L++VDE+ 
Sbjct: 341 SNYPDIKVAIFSGAQSKDEKDELITKITNGHLQIIVGTHALLTERMAYNNLGLLVVDEEQ 400


>gi|331089329|ref|ZP_08338230.1| hypothetical protein HMPREF1025_01813 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330405510|gb|EGG85042.1| hypothetical protein HMPREF1025_01813 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 712

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 77/141 (54%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  AI+D   DM  K  M R++ GDVG GKT +A+ A   AV+ G Q V + P  IL
Sbjct: 570 TDDQLQAIEDTKHDMESKKIMDRLICGDVGYGKTEIAIRAAFKAVQEGKQVVCLVPTTIL 629

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY    +  +   + ++++      A ++K +E    G   I++GTH +    + + 
Sbjct: 630 AQQHYNTFVQRLKEFPVRIDLLCRFRSAAEQKKTIEDTKKGFVDILVGTHRVLSKDVVFK 689

Query: 394 KLILVIVDEQHRFGVQQRLKL 414
            L L+I+DE+ RFGV  + K+
Sbjct: 690 DLGLLIIDEEQRFGVTHKEKI 710


>gi|289803883|ref|ZP_06534512.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 118

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/110 (47%), Positives = 70/110 (63%), Gaps = 5/110 (4%)

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +
Sbjct: 6   ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 65

Query: 591 SCILLY-HP-PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILG 635
              LL  HP  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG
Sbjct: 66  YAWLLTPHPKAMTADAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 115


>gi|309808735|ref|ZP_07702621.1| TRCF domain protein [Lactobacillus iners LactinV 01V1-a]
 gi|308167971|gb|EFO70103.1| TRCF domain protein [Lactobacillus iners LactinV 01V1-a]
          Length = 321

 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 77/131 (58%), Gaps = 5/131 (3%)

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++ENA+ +GL+Q
Sbjct: 8   ARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLVENADTYGLSQ 67

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
           L+QLRGR+GR   ++    LY     L++ S  RL+ +++      GF IA  DL  R  
Sbjct: 68  LYQLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKIAMRDLSIRGA 127

Query: 631 GEILGIKQSGM 641
           G +LG +Q G 
Sbjct: 128 GNVLGKQQHGF 138


>gi|309808765|ref|ZP_07702651.1| putative transcription-repair coupling factor [Lactobacillus iners
           LactinV 01V1-a]
 gi|308168001|gb|EFO70133.1| putative transcription-repair coupling factor [Lactobacillus iners
           LactinV 01V1-a]
          Length = 708

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 80/139 (57%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q  AI++I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P
Sbjct: 559 PYLETPDQIKAIREIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVP 618

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY  + +  ++  + V ++     +    +    +++G+  I++GTH +    
Sbjct: 619 TTILAEQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRD 678

Query: 390 IQYYKLILVIVDEQHRFGV 408
           I++  L L+I+DE+ RFGV
Sbjct: 679 IKFKNLGLLIIDEEQRFGV 697


>gi|33322039|gb|AAQ06738.1|AF496082_1 transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. lactis]
          Length = 157

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 65/102 (63%), Gaps = 5/102 (4%)

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LS 601
           +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+QLRGR+GR   ++    LY P   L+
Sbjct: 4   ILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLT 63

Query: 602 KNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           +    RL  +++  +   GF IA  DL  R  G +LG +Q G
Sbjct: 64  EVGEKRLDAMRDFTELGAGFKIAMRDLSIRGAGNMLGAQQHG 105


>gi|213051995|ref|ZP_03344873.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 718

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 66/128 (51%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   
Sbjct: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+IGT
Sbjct: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710

Query: 383 HALFQDSI 390
           H L Q  +
Sbjct: 711 HKLLQSDV 718


>gi|332865872|ref|ZP_08436652.1| TRCF domain protein [Acinetobacter baumannii 6013113]
 gi|332734922|gb|EGJ66008.1| TRCF domain protein [Acinetobacter baumannii 6013113]
          Length = 288

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 65/104 (62%), Gaps = 7/104 (6%)

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--- 599
            +L+ +T+IE GIDV +A+ I+IE A+  GLAQLHQLRGRVGR    +   LL  P    
Sbjct: 3   NVLVCSTIIETGIDVPNANTILIERADKLGLAQLHQLRGRVGRSHHQAYAYLLV-PSIKH 61

Query: 600 LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           L  ++  RL  ++       GF++A EDL+ R  GE+LG +QSG
Sbjct: 62  LKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELLGEQQSG 105


>gi|262401991|ref|ZP_06078556.1| ATP-dependent DNA helicase RecG [Vibrio sp. RC586]
 gi|262351963|gb|EEZ01094.1| ATP-dependent DNA helicase RecG [Vibrio sp. RC586]
          Length = 271

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 115/250 (46%), Gaps = 20/250 (8%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFF-NFTAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFH---NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
               + ++HP Y F     + DV  P +  VY    GL     + +  +AL+ L    + 
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVE-PNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L 
Sbjct: 180 ELLPSGLYDQQM--TLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLA 237

Query: 243 MRKQFKKEIG 252
           +R Q ++++ 
Sbjct: 238 IRSQGQQDVA 247


>gi|255016646|ref|ZP_05288772.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           F2-515]
          Length = 292

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 5/102 (4%)

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LS 601
           +L+ TT+IE G+D+ + + + +++A+  GL+QL+QLRGRVGR   I+    +Y     L 
Sbjct: 1   MLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILR 60

Query: 602 KNSYTRLSVLKN-TE--DGFLIAEEDLKQRKEGEILGIKQSG 640
           + +  RLS +K  TE   GF IA  DL  R  G ILG +Q G
Sbjct: 61  EEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGNILGAQQHG 102


>gi|329965418|ref|ZP_08302342.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
 gi|328522210|gb|EGF49324.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
          Length = 455

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 174/437 (39%), Gaps = 88/437 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +L    GSGKTL  L+ +  A+     G QAV++ P   LA Q     K    NT     
Sbjct: 46  VLLSPTGSGKTLAFLLPLVQALSPDVPGVQAVVLVPSRELALQIENVFK--AMNTPFKAM 103

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
              G  P     + +  I      +IIGT     D     + +   +  +I+DE  +   
Sbjct: 104 SCYGGRPAMEEHRTMRGI---NPSVIIGTPGRMNDHLKKENFEARTVTALIIDEFDKCLE 160

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATP---IPRTLVLTSLGDIDISKITEKPAG----RK 456
           FG    +   + Q  +    +L++AT    IP+   + S+GD  + K+    AG    R 
Sbjct: 161 FGFHDEMSEVIGQLPSLKKRVLLSATDAEEIPQFAGVGSMGDSRLCKLDFLDAGPVSERL 220

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            ++ VI P     E + RL   L +     ++          N+R  VER  S  +    
Sbjct: 221 NLQRVISPEKDKLETLYRLLCTLGDRSALVFV----------NYRESVERVTSYLKSKKF 270

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL--- 573
                HG M   D+E  +  F+NG+C +L++T +   G+D+       I+N  H+ L   
Sbjct: 271 PCDAFHGGMEQADRERALYKFRNGSCPVLVSTDLAARGLDIPG-----IDNVVHYHLPVN 325

Query: 574 --AQLHQLRGRVGRGEEISSCILLYH----------------------PPLSKNSYTRLS 609
             A  H+  GR  R E   S  L+ H                      P  +K+ +T L 
Sbjct: 326 EEAFTHR-NGRTARWEARGSSFLILHSEEPLPGYIPEDTPVFELPEQTPKPAKSRWTTLY 384

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGI--KQSGMPKFLIAQPEL--HDSLLEIARKDAKH 665
           + K  +D          +  + +I+G   K+ G+ K  + Q ++  H + + I R  +  
Sbjct: 385 IGKGKKD----------KLNKIDIVGFLYKKGGLAKEDVGQVDVKEHYAFVAIRRSKSNQ 434

Query: 666 ILTQDPDLTSVRGQSIR 682
           +LT       +RG+ I+
Sbjct: 435 LLTL------IRGEKIK 445


>gi|325185113|emb|CCA19605.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 711

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 131/310 (42%), Gaps = 43/310 (13%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL   I M   V          G  A++++P   LA Q Y  +K +T+       
Sbjct: 229 TGSGKTLAFTIPMIWHVMDQRELSKGEGPIAIVISPTRELAHQIYTQVKMFTKLYGAECV 288

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR--- 405
            + G + +  + +AL +     A ++I T       + + +I+  ++  V++DE  R   
Sbjct: 289 AVYGGVGKWEQVQALRK----GAEVLIATPGRLIELIRKKTIKTNRVTFVVLDEADRMFE 344

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             F  Q R  L Q       LL +AT  PR   L             +     PIK  + 
Sbjct: 345 LGFESQLRSMLGQLRPDRQSLLFSATFRPRIEQLA------------RAILHNPIKVTVG 392

Query: 464 PINRIDEVIERLKVVL-SEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFT 515
              + +EVI ++ VVL + GKK  W+   +E   +       +N +   E  +   +   
Sbjct: 393 KAGQANEVISQIPVVLLNHGKKWEWLMKNLERIVDQGRVLIFANSKVGCEELSKNLDAMH 452

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
               ++HG  S  D+ S +  FKNG C +++AT V   G+D+ D   ++  +        
Sbjct: 453 YRCCLLHGDKSQYDRSSALADFKNGKCPVMVATDVASRGLDIRDVKTVVNYDVAKNIDIH 512

Query: 576 LHQLRGRVGR 585
           +H++ GR GR
Sbjct: 513 VHRI-GRTGR 521


>gi|207109941|ref|ZP_03244103.1| DNA recombinase (recG) [Helicobacter pylori HPKX_438_CA4C1]
          Length = 143

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 6/115 (5%)

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           D +KE V++ F+  +  +L+ATT+IEVGI +   S+++I   E  GLA LHQLRGRV R 
Sbjct: 19  DKNKEEVIEEFRE-SGSILLATTLIEVGISLPRLSVMVILAPERLGLATLHQLRGRVSRN 77

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSG 640
                C L       +    RL    +  DGF IAE DL+ RK G++L G +QSG
Sbjct: 78  GLKGYCFLC----TIQEENERLEKFADELDGFKIAELDLEYRKSGDLLHGGEQSG 128


>gi|154149364|ref|YP_001406374.1| ATP-dependent DNA helicase RecG [Campylobacter hominis ATCC
           BAA-381]
 gi|153805373|gb|ABS52380.1| ATP-dependent DNA helicase RecG [Campylobacter hominis ATCC
           BAA-381]
          Length = 126

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 56/99 (56%), Gaps = 10/99 (10%)

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL---LYHPPLSK 602
           + TTV+EVGI +   SII+I  AE  GLA LHQLRGRVGR   I  C L   L   P   
Sbjct: 1   MTTTVVEVGISLPRLSIIVIVGAEKMGLASLHQLRGRVGRNGGIGYCYLYTKLESIP--- 57

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSG 640
               RL     T DGF +AE DLK R+ G++L G  Q G
Sbjct: 58  ---ERLKEFAATLDGFKVAEIDLKNRQAGDLLDGTIQHG 93


>gi|297182584|gb|ADI18743.1| recg-like helicase [uncultured gamma proteobacterium HF4000_36I10]
          Length = 254

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 13/227 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLLF+ P  + DR     I  +       I G + Q +     KRR     + DGTG +T
Sbjct: 33  DLLFHLPLRYQDRTRVTPIGALQLGVDAVIEGEV-QMADIAFGKRRSLICKVQDGTGLVT 91

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVY 160
           L FF+      K   F G +I   G+ ++    + + HP Y   + Q   V    +  VY
Sbjct: 92  LRFFHFSAAQ-KKQLFAGARIRCYGEPRRGGAGLELYHPEYQLLDEQQPAVLEDRLTPVY 150

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNP----RK 214
               G+   +++K+  +AL+ L   P  E I +  L +  FP +++A   +H P    R 
Sbjct: 151 PTTEGIGQTVWRKLCRQALTFLDKHPVTELISQHELAR--FP-LSDALRYLHQPPPKARL 207

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI 261
           +   E   PA+ RLA++ELLA  +A+L  R+Q +    +P+    ++
Sbjct: 208 SLISEGLHPAQRRLAFEELLAHNLAMLKTREQAQARGAVPLAASQQL 254


>gi|56460521|ref|YP_155802.1| ATP-dependent RNA helicase DbpA [Idiomarina loihiensis L2TR]
 gi|56179531|gb|AAV82253.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 474

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 139/316 (43%), Gaps = 40/316 (12%)

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT 348
           N    +++ D GSGKT    + + A +EA     QA+++ P   LA Q  + ++K  ++ 
Sbjct: 57  NNTDAVVRADTGSGKTTAFALTLLAKLEAKSFSPQALVLCPTRELAHQVADEVRKLAKSM 116

Query: 349 -QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDE 402
             I +  + G  P   +  +LE   HG AH+++GT       L Q ++    L  +++DE
Sbjct: 117 LNIKILTLCGGEPSRIQTNSLE---HG-AHVLVGTPGRVLDHLEQRNVDLSMLTTLVLDE 172

Query: 403 QHRF---GVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
             R    G Q  L    K        LL +AT  P+ +   +       ++T K    + 
Sbjct: 173 ADRMLEMGFQDSLNAIVKHIPKTRQTLLFSAT-YPKNIAALA------EQVTTKARNIEA 225

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-------RSVVERFNSL 510
           I+    P       IE+L   ++    A  +   + + +  N          V + FN+L
Sbjct: 226 IQEQAKP------QIEQLFYAMNNEDSAQLVMNLLGDHQPENCLVFCNTKNEVKDIFNTL 279

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             +  S +A+ HG +   D++  +  F NG+ ++LIAT V   G+D+ +  ++I  N  H
Sbjct: 280 RANKFSVLAL-HGELEQKDRDQAIIQFSNGSARVLIATDVASRGLDIAELDLVISVNMAH 338

Query: 571 FGLAQLHQLRGRVGRG 586
                 H++ GR GR 
Sbjct: 339 DLDTHTHRI-GRTGRA 353


>gi|47054160|gb|AAT09190.1| mfd [Mycobacterium avium subsp. paratuberculosis]
          Length = 121

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 49/73 (67%)

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + + + HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+Q
Sbjct: 47  ARVVVAHGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQ 106

Query: 576 LHQLRGRVGRGEE 588
           LHQLRGRVGR  E
Sbjct: 107 LHQLRGRVGRSRE 119


>gi|47054170|gb|AAT09195.1| mfd [Mycobacterium avium subsp. paratuberculosis]
          Length = 122

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 48/71 (67%)

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + + HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLH
Sbjct: 50  VVVAHGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLH 109

Query: 578 QLRGRVGRGEE 588
           QLRGRVGR  E
Sbjct: 110 QLRGRVGRSRE 120


>gi|47054156|gb|AAT09188.1| mfd [Mycobacterium avium subsp. paratuberculosis]
          Length = 125

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 49/73 (67%)

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + + + HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+Q
Sbjct: 47  ARVVVAHGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQ 106

Query: 576 LHQLRGRVGRGEE 588
           LHQLRGRVGR  E
Sbjct: 107 LHQLRGRVGRSRE 119


>gi|238791786|ref|ZP_04635423.1| ATP-independent RNA helicase dbpA [Yersinia intermedia ATCC 29909]
 gi|238728890|gb|EEQ20407.1| ATP-independent RNA helicase dbpA [Yersinia intermedia ATCC 29909]
          Length = 460

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 162/348 (46%), Gaps = 58/348 (16%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           T  Q +A+  IL  QD+  K +         GSGKT    I +   +  G    QA+++ 
Sbjct: 28  TPVQAAALPAILNGQDVRAKAK--------TGSGKTAAFGIGLLDKIAVGEFVTQALVLC 79

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q       + ++TQN +I+   + G  P  H+   L+ + H   HI++GT   
Sbjct: 80  PTRELADQVSKELRRLARFTQNIKILT--LCGGQPMGHQ---LDSLVHA-PHIVVGTPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            Q+ ++   L+L     +++DE  R      L +        V+  T  P  +TL+ ++ 
Sbjct: 134 IQEHLRKKTLVLDDLKILVLDEADRM-----LDMGFTDAIDDVIAYTP-PQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEV--IERLKVVLSEGKKAYWICPQIEEKKES 498
             + I +I+ +   R+PI    + ++  DEV  IE++    +  K+   +   +   + S
Sbjct: 188 YPVGIERISAR-VQRQPIN---VEVDDGDEVPAIEQVFFETTREKRLPLLISVLSHYQPS 243

Query: 499 N---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +   F +  +   S++E   S   S+  +HG +   D++ V+  F N +C++L+AT V  
Sbjct: 244 SCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 303

Query: 553 VGIDVVDASIIIIENAEHFGLA---QLHQLR-GRVGR----GEEISSC 592
            G+D+ D ++++     +F LA   ++H  R GR GR    G  +S C
Sbjct: 304 RGLDIKDLALVV-----NFELAFDPEVHVHRIGRTGRAGMSGLAVSLC 346


>gi|47054162|gb|AAT09191.1| mfd [Mycobacterium avium subsp. paratuberculosis]
 gi|47054164|gb|AAT09192.1| mfd [Mycobacterium avium subsp. paratuberculosis]
 gi|47054166|gb|AAT09193.1| mfd [Mycobacterium avium subsp. paratuberculosis]
 gi|47054168|gb|AAT09194.1| mfd [Mycobacterium avium subsp. paratuberculosis]
          Length = 121

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 48/71 (67%)

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + + HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLH
Sbjct: 50  VVVAHGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLH 109

Query: 578 QLRGRVGRGEE 588
           QLRGRVGR  E
Sbjct: 110 QLRGRVGRSRE 120


>gi|315928208|gb|EFV07525.1| type III restriction enzyme, res subunit family [Campylobacter
           jejuni subsp. jejuni DFVF1099]
 gi|315929755|gb|EFV08925.1| type III restriction enzyme, res subunit family [Campylobacter
           jejuni subsp. jejuni 305]
          Length = 313

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+++PFS TK Q +A+KDI +D+  K    R++ GDVG GKTLV L   AA +    QA+
Sbjct: 219 LKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLL--GAALMVYPKQAI 276

Query: 326 IMAPIGILAQQHYEFIKKY 344
           +MAP  ILA Q YE  KK+
Sbjct: 277 LMAPTSILAYQLYEEAKKF 295


>gi|47054158|gb|AAT09189.1| mfd [Mycobacterium avium subsp. paratuberculosis]
          Length = 120

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 49/73 (67%)

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + + + HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+Q
Sbjct: 47  ARVVVAHGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQ 106

Query: 576 LHQLRGRVGRGEE 588
           LHQLRGRVGR  E
Sbjct: 107 LHQLRGRVGRSRE 119


>gi|167951220|ref|ZP_02538294.1| Transcription-repair coupling factor [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 346

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 49/77 (63%)

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           K ++ +A G   I+IGTH L  DSI +  L LVI+DE+HRFGV+ + +     +   +L 
Sbjct: 243 KVIDGLADGTIDIVIGTHKLLSDSISFKDLGLVIIDEEHRFGVRHKERFKALRSEVDLLT 302

Query: 426 MTATPIPRTLVLTSLGD 442
           +TATPIPRTL    +GD
Sbjct: 303 LTATPIPRTLKHGDVGD 319


>gi|224013116|ref|XP_002295210.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969172|gb|EED87514.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 171

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 6/134 (4%)

Query: 212 PR--KAKDFEWTSPARERLAYDELLAGQI-ALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
           PR  + K   W+   R+  A    +A  + AL   R+   +    P ++EGK+ +    +
Sbjct: 36  PRLSRVKGEAWSKAKRKVEANTVQMAEDVLALYATRETLNRSPFDP-SLEGKV-KTFATS 93

Query: 269 IPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            PF PT  Q+   +D+  DM  ++R M R++ GDVG GKT VA+ A+  AV  G QA ++
Sbjct: 94  FPFEPTPDQKKCFEDVENDMVWRSRPMDRLICGDVGFGKTEVAMRALFRAVANGRQAALL 153

Query: 328 APIGILAQQHYEFI 341
           AP G+LA QH++ I
Sbjct: 154 APTGVLAAQHFKQI 167


>gi|325473854|gb|EGC77042.1| hypothetical protein HMPREF9353_01390 [Treponema denticola F0402]
          Length = 721

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 61/107 (57%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q + I ++ +DM +   M R++ GDVG GKT VA+ A   AV +G Q   ++
Sbjct: 612 FPYEETDDQLTCIAEVKEDMEKPVPMDRLICGDVGYGKTEVAMRAAFKAVMSGKQVAFLS 671

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           P  IL +QH+E + K  +N  + +  ++  +P+  ++K LE++   +
Sbjct: 672 PTTILTEQHFETLDKRFKNFPVKLARLSRFVPKGEQKKVLEKLKKAK 718


>gi|153947047|ref|YP_001401319.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis IP
           31758]
 gi|170024671|ref|YP_001721176.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis YPIII]
 gi|152958542|gb|ABS46003.1| ATP-independent RNA helicase DbpA [Yersinia pseudotuberculosis IP
           31758]
 gi|169751205|gb|ACA68723.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 460

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 143/328 (43%), Gaps = 68/328 (20%)

Query: 302 VGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIVEII 355
            GSGKT    I +   +  G    QA+++ P   LA Q       + ++TQN +I+   +
Sbjct: 50  TGSGKTAAFGIGLLDKIAVGEFVTQALVLCPTRELADQVSKELRRLARFTQNIKILT--L 107

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR----- 405
            G  P  H+   L+ + H   HI++GT    Q+ ++   L+L     +++DE  R     
Sbjct: 108 CGGQPMGHQ---LDSLVHA-PHIVVGTPGRIQEHLRKKTLVLDELKTLVLDEADRMLDMG 163

Query: 406 ----------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
                     +   QR  L   AT P  +   +  + R  +   +GD D     E+PA  
Sbjct: 164 FSDAIDDVIAYTPPQRQTLLFSATYPSGIEQISARVQRQPLNVEVGDTD-----EEPA-- 216

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             I+ V     R ++ +  L  VLS  + A  +           F +  +   S++E   
Sbjct: 217 --IEQVFFETTR-EKRLPLLISVLSHYQPASCVV----------FCNTKKDCQSVYESLE 263

Query: 516 S---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           S   S+  +HG +   D++ V+  F N +C++L+AT V   G+D+ D  ++I     +F 
Sbjct: 264 SRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLELVI-----NFE 318

Query: 573 LA---QLHQLR-GRVGR----GEEISSC 592
           LA   ++H  R GR GR    G  +S C
Sbjct: 319 LAFDPEIHVHRIGRTGRAGMSGLAVSLC 346


>gi|47054176|gb|AAT09198.1| mfd [Mycobacterium avium subsp. paratuberculosis]
          Length = 125

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 46/67 (68%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQLRG
Sbjct: 55  HGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRG 114

Query: 582 RVGRGEE 588
           RVGR  E
Sbjct: 115 RVGRSRE 121


>gi|47054180|gb|AAT09200.1| mfd [Mycobacterium avium subsp. paratuberculosis]
          Length = 125

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 46/67 (68%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQLRG
Sbjct: 56  HGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRG 115

Query: 582 RVGRGEE 588
           RVGR  E
Sbjct: 116 RVGRSRE 122


>gi|47054172|gb|AAT09196.1| mfd [Mycobacterium avium subsp. paratuberculosis]
          Length = 124

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 46/67 (68%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQLRG
Sbjct: 55  HGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRG 114

Query: 582 RVGRGEE 588
           RVGR  E
Sbjct: 115 RVGRSRE 121


>gi|47054178|gb|AAT09199.1| mfd [Mycobacterium avium subsp. paratuberculosis]
          Length = 123

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 46/67 (68%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQLRG
Sbjct: 55  HGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRG 114

Query: 582 RVGRGEE 588
           RVGR  E
Sbjct: 115 RVGRSRE 121


>gi|22126413|ref|NP_669836.1| ATP-dependent RNA helicase DbpA [Yersinia pestis KIM 10]
 gi|45441434|ref|NP_992973.1| ATP-dependent RNA helicase DbpA [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108807144|ref|YP_651060.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Antiqua]
 gi|108812508|ref|YP_648275.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Nepal516]
 gi|145598635|ref|YP_001162711.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Pestoides F]
 gi|149366275|ref|ZP_01888310.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162421745|ref|YP_001606136.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Angola]
 gi|165928002|ref|ZP_02223834.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938672|ref|ZP_02227227.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010820|ref|ZP_02231718.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210580|ref|ZP_02236615.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167402150|ref|ZP_02307625.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420322|ref|ZP_02312075.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425805|ref|ZP_02317558.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467438|ref|ZP_02332142.1| ATP-independent RNA helicase DbpA [Yersinia pestis FV-1]
 gi|218928898|ref|YP_002346773.1| ATP-dependent RNA helicase DbpA [Yersinia pestis CO92]
 gi|229896216|ref|ZP_04511386.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229897150|ref|ZP_04512306.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229897877|ref|ZP_04513028.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902891|ref|ZP_04518008.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|270486675|ref|ZP_06203749.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294504053|ref|YP_003568115.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|21959402|gb|AAM86087.1|AE013856_1 ATP-dependent RNA helicase [Yersinia pestis KIM 10]
 gi|45436295|gb|AAS61850.1| ATP-dependent RNA helicase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108776156|gb|ABG18675.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|108779057|gb|ABG13115.1| ATP-dependent RNA helicase [Yersinia pestis Antiqua]
 gi|115347509|emb|CAL20417.1| ATP-dependent RNA helicase [Yersinia pestis CO92]
 gi|145210331|gb|ABP39738.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides F]
 gi|149292688|gb|EDM42762.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162354560|gb|ABX88508.1| ATP-independent RNA helicase DbpA [Yersinia pestis Angola]
 gi|165913286|gb|EDR31908.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920059|gb|EDR37360.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990164|gb|EDR42465.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207760|gb|EDR52240.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962017|gb|EDR58038.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048425|gb|EDR59833.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055204|gb|EDR65001.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680338|gb|EEO76437.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229688918|gb|EEO80983.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693487|gb|EEO83536.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701139|gb|EEO89168.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262361760|gb|ACY58481.1| ATP-dependent RNA helicase [Yersinia pestis D106004]
 gi|262366103|gb|ACY62660.1| ATP-dependent RNA helicase [Yersinia pestis D182038]
 gi|270335179|gb|EFA45956.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294354512|gb|ADE64853.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|320015493|gb|ADV99064.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 460

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 143/328 (43%), Gaps = 68/328 (20%)

Query: 302 VGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIVEII 355
            GSGKT    I +   +  G    QA+++ P   LA Q       + ++TQN +I+   +
Sbjct: 50  TGSGKTAAFGIGLLDKIAVGEFVTQALVLCPTRELADQVSKELRRLARFTQNIKILT--L 107

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR----- 405
            G  P  H+   L+ + H   HI++GT    Q+ ++   L+L     +++DE  R     
Sbjct: 108 CGGQPMGHQ---LDSLVHA-PHIVVGTPGRIQEHLRKKTLVLDELKTLVLDEADRMLDMG 163

Query: 406 ----------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
                     +   QR  L   AT P  +   +  + R  +   +GD D     E+PA  
Sbjct: 164 FSDAIDDVIAYTPPQRQTLLFSATYPSGIEQISARVQRQPLNVEVGDTD-----EEPA-- 216

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             I+ V     R ++ +  L  VLS  + A  +           F +  +   S++E   
Sbjct: 217 --IEQVFFETTR-EKRLPLLISVLSHYQPASCVV----------FCNTKKDCQSVYESLE 263

Query: 516 S---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           S   S+  +HG +   D++ V+  F N +C++L+AT V   G+D+ D  ++I     +F 
Sbjct: 264 SRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLELVI-----NFE 318

Query: 573 LA---QLHQLR-GRVGR----GEEISSC 592
           LA   ++H  R GR GR    G  +S C
Sbjct: 319 LAFDPEIHIHRIGRTGRAGMSGLAVSLC 346


>gi|51595988|ref|YP_070179.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis IP
           32953]
 gi|186895088|ref|YP_001872200.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis PB1/+]
 gi|51589270|emb|CAH20891.1| ATP-dependent RNA helicase [Yersinia pseudotuberculosis IP 32953]
 gi|186698114|gb|ACC88743.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
          Length = 460

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 143/328 (43%), Gaps = 68/328 (20%)

Query: 302 VGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIVEII 355
            GSGKT    I +   +  G    QA+++ P   LA Q       + ++TQN +I+   +
Sbjct: 50  TGSGKTAAFGIGLLDKIAVGEFVTQALVLCPTRELADQVSKELRRLARFTQNIKILT--L 107

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR----- 405
            G  P  H+   L+ + H   HI++GT    Q+ ++   L+L     +++DE  R     
Sbjct: 108 CGGQPMGHQ---LDSLVHA-PHIVVGTPGRIQEHLRKKTLVLDELKTLVLDEADRMLDMG 163

Query: 406 ----------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
                     +   QR  L   AT P  +   +  + R  +   +GD D     E+PA  
Sbjct: 164 FSDAIDDVIAYTPPQRQTLLFSATYPSGIEQISARVQRQPLNVEVGDTD-----EEPA-- 216

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             I+ V     R ++ +  L  VLS  + A  +           F +  +   S++E   
Sbjct: 217 --IEQVFFETTR-EKRLPLLISVLSYYQPASCVV----------FCNTKKDCQSVYESLE 263

Query: 516 S---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           S   S+  +HG +   D++ V+  F N +C++L+AT V   G+D+ D  ++I     +F 
Sbjct: 264 SRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLELVI-----NFE 318

Query: 573 LA---QLHQLR-GRVGR----GEEISSC 592
           LA   ++H  R GR GR    G  +S C
Sbjct: 319 LAFDPEIHVHRIGRTGRAGMSGLAVSLC 346


>gi|119505184|ref|ZP_01627259.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080]
 gi|119458875|gb|EAW39975.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080]
          Length = 465

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 144/317 (45%), Gaps = 24/317 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I+Q   GSGKT    I +   +     G QAV+M P   LA+Q  E  ++  ++ + + V
Sbjct: 45  IIQAKTGSGKTAAFAIGLLHHLNPRFFGVQAVVMCPTRELAEQVGEATRQLASRMSNVKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++ G  P   +R +L    H  AHI++GT    QD +Q   L L  V     F + +  
Sbjct: 105 VMLCGGKPFGAQRDSL----HHGAHIVVGTPGRIQDHLQRGTLELKGVTT---FVLDEAD 157

Query: 413 KLTQKATAPHVLLMTAT-PIPR-TLVLTSLGDIDISKITEKPAGRKPIK-TVIIPINRID 469
           ++     A  +  +TA  P  R TL+L++    DI KI+ +   + PI+ TV   +   +
Sbjct: 158 RMLDMGFADVMAEITAKLPADRQTLLLSATFPDDIKKIS-RSIQKNPIQITVDAEVVHDE 216

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNF-------RSVVERFNSLHEHFTSSIAIIH 522
            V+E++   + + ++   +    E  + +N        +   E    L EH   + AI H
Sbjct: 217 VVLEQVFFEVQKHERNVALLALFEHYRPANAMVFCNTKKQCAEVARFLREHDIEAAAI-H 275

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G +   +++ V+  F N +C +L+A+ V   G+D+    +++           +H++ GR
Sbjct: 276 GDLEQRERDQVLLQFANNSCPVLVASDVAARGLDIPSLEMVVNFELPRDADTYVHRI-GR 334

Query: 583 VGRGEEISSCILLYHPP 599
            GR  E      +  PP
Sbjct: 335 TGRAGESGKAFSIVTPP 351


>gi|47054174|gb|AAT09197.1| mfd [Mycobacterium avium subsp. paratuberculosis]
          Length = 122

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 46/67 (68%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQLRG
Sbjct: 55  HGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRG 114

Query: 582 RVGRGEE 588
           RVGR  E
Sbjct: 115 RVGRSRE 121


>gi|319902431|ref|YP_004162159.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417462|gb|ADV44573.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 466

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 128/326 (39%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +L    GSGKTL  L+ +  +++   +G QAV++ P   LA Q     K    NT     
Sbjct: 57  VLLSPTGSGKTLAFLLPLVQSLKPDVSGVQAVVLVPSRELALQIENVFK--AMNTSFKAM 114

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
              G  P     + +  I      +IIGT     D ++           L++   D+   
Sbjct: 115 CCYGGRPAMDEHRTMRGICPA---VIIGTPGRMNDHLKKENFDGNAVTTLVIDEFDKCLE 171

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT-------EKPAGRK 456
           FG    +   + Q  +    +L++AT          +G+ D  +I        E  + R 
Sbjct: 172 FGFHDEMSEVIGQLPSLKKRVLLSATDAEEIPQFAGVGNADSPQIAKLNFLSVEPVSERL 231

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            ++ VI P     E + RL  VL       ++          N+R  VER  +  +    
Sbjct: 232 NLQRVISPEKDKLETLYRLLCVLGNHSTLVFV----------NYRESVERVAAYLKSKKF 281

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL--- 573
                HG M   D+E  +  F+NG+C +LI+T +   G+D+       I+N  H+ L   
Sbjct: 282 PCDAFHGGMEQADRERALYKFRNGSCPVLISTDLAARGLDIPG-----IDNVVHYHLPVN 336

Query: 574 --AQLHQLRGRVGRGEEISSCILLYH 597
             A  H+  GR  R E      L++H
Sbjct: 337 EEAFTHR-NGRTARWEARGFSFLIFH 361


>gi|190150660|ref|YP_001969185.1| transcription-repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189915791|gb|ACE62043.1| transcription-repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 712

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 51/88 (57%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ 
Sbjct: 603 FPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLV 662

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           P  +LAQQH+E  K    N  I VE+++
Sbjct: 663 PTTLLAQQHFENFKDRFANYPINVEVLS 690


>gi|93006831|ref|YP_581268.1| primosomal protein N' [Psychrobacter cryohalolentis K5]
 gi|92394509|gb|ABE75784.1| replication restart DNA helicase PriA [Psychrobacter cryohalolentis
           K5]
          Length = 793

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 19/210 (9%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P    + Q+ A+  I+     K     +L G  GSGKT V L AM A +EAG Q +
Sbjct: 227 LAKMPLDLNEEQQLAVAAIVAAHESKCYTGFLLNGITGSGKTEVYLQAMQAVLEAGKQVL 286

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           I+ P IG+  Q    F  ++  +    + ++   M   HR +  +    G A IIIGT +
Sbjct: 287 ILVPEIGLTPQTRARFASRFAAH----IVLLHSGMNNTHRLQGWQDCRTGHAQIIIGTRS 342

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ-----------KATAPHVLLMTATPIPR 433
                  +  L L++VDE H    +Q+  L             +A  P V+L TATP   
Sbjct: 343 AVL--YPFADLGLIVVDEAHDGSYKQQDTLRYHAADVALYRGFQAKIP-VVLGTATPSLE 399

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            L L   G +   +++ +P   KP    +I
Sbjct: 400 HLKLVDEGKLVECQLSTRPGNAKPAPMQLI 429


>gi|238783787|ref|ZP_04627806.1| Transcription-repair-coupling factor [Yersinia bercovieri ATCC
           43970]
 gi|238715338|gb|EEQ07331.1| Transcription-repair-coupling factor [Yersinia bercovieri ATCC
           43970]
          Length = 725

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 68/136 (50%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LL +  Q   + G    ++ +  Q   ++ PF  T  QE AI  +L DM Q   M R++ 
Sbjct: 568 LLDIYAQRAAKSGFKFKLDREQYQLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVC 627

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++  +       + +E+++   
Sbjct: 628 GDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFR 687

Query: 360 PQAHRRKALERIAHGQ 375
               ++  LE+ A G+
Sbjct: 688 SAKEQQLILEQAAEGK 703


>gi|300123567|emb|CBK24839.2| unnamed protein product [Blastocystis hominis]
          Length = 818

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 136/313 (43%), Gaps = 44/313 (14%)

Query: 302 VGSGKTLVAL---IAMAAAV----EAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   L   I  AAA     EA G   + M P   LA+Q     K +    ++ V 
Sbjct: 263 TGSGKTCCYLWPFILHAAAQPELEEADGPIGIAMVPTRELAEQIASVAKTFFAPFRLSVM 322

Query: 354 IITGNMPQAHRRKALERIAHGQA-HIIIGTHALFQDSI-QYY----KLILVIVDEQHR-- 405
            ITG   +  ++K L    H ++ H I+GT   F D + Q Y    +   V++DE  R  
Sbjct: 323 CITGGQSEWQQKKTL----HVRSFHFIVGTPGRFIDLVNQKYLPMNRCSYVVLDEADRMV 378

Query: 406 -FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
             G +Q+++       P   +LL +AT  PR + L+    +D            P++  +
Sbjct: 379 SLGFEQQIRSLLGVIRPDRQLLLFSATFPPRVVNLS----LDWMAT--------PVRVAV 426

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKES-----NFRSVVERF-NSLHEHF 514
                 +  IE+   V+ EG+K  ++  C    E K       N R   E   ++L +  
Sbjct: 427 GRSGEANSNIEQRFEVMREGQKIGFLRQCIADLEMKGKVLIFVNTRQGAEELLHTLEKLT 486

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           TS I  IHG     D+   M+ FK G  ++LIAT V   G+DV D   ++  +A      
Sbjct: 487 TSPIGCIHGEKMQYDRSDAMNRFKRGELRILIATDVAARGLDVSDIRTVVNFDAPSSVDV 546

Query: 575 QLHQLRGRVGRGE 587
            +H++ GR  R E
Sbjct: 547 YVHRI-GRTCRSE 558


>gi|167762759|ref|ZP_02434886.1| hypothetical protein BACSTE_01117 [Bacteroides stercoris ATCC
           43183]
 gi|167699099|gb|EDS15678.1| hypothetical protein BACSTE_01117 [Bacteroides stercoris ATCC
           43183]
          Length = 443

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 145/359 (40%), Gaps = 52/359 (14%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           ILRN+       Q + +++  +D  Q ++ L +L    GSGKTL  L+ +  +++A   G
Sbjct: 6   ILRNLRIE----QLTPMQEAARDAYQSDKDL-VLLSPTGSGKTLAFLLPLVQSLKADVQG 60

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QAV++ P   LA Q     K  + N         G  P     + +  I      +IIG
Sbjct: 61  VQAVVLVPSRELALQIENVFK--SMNVPFKAMSCYGGRPAMDEHRTMRGI---NPAVIIG 115

Query: 382 THALFQDSIQYYK-----LILVIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPI 431
           T     D ++        +  +++DE  +   FG    +   + Q       +L++AT  
Sbjct: 116 TPGRMNDHLRKQNFDTRFVTTLVIDEFDKCLEFGFHDEMAEVIGQLPALKKRVLLSATDA 175

Query: 432 PRTLVLTSLGDIDISKIT--------EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
                 T +G  + S           E  +GR  ++ VI P     E + RL   L +  
Sbjct: 176 EEIPQFTGVGGGESSPQVVKLNFLSGETVSGRLDLQKVISPEKDKLETLYRLLCTLGDRS 235

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
              ++          N+R  VER  S  +         HG M   D+E  +  F+NG+C 
Sbjct: 236 TLVFV----------NYRESVERTVSYLKSKKFPCDAFHGGMEQDDRERALYKFRNGSCP 285

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQLHQLRGRVGRGEEISSCILLYH 597
           +L++T +   G+D+       I+N  H+ +     A  H+  GR  R E   S  LL H
Sbjct: 286 VLVSTDLAARGLDIPG-----IDNVVHYHMPVNEEAFTHR-NGRTARWEARGSSFLLLH 338


>gi|213025505|ref|ZP_03339952.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 83

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 52/77 (67%)

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A  
Sbjct: 3   SHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADL 62

Query: 650 ELHDSLLEIARKDAKHI 666
               +++   ++ A+HI
Sbjct: 63  LRDQAMIPEVQRIARHI 79


>gi|296417346|ref|XP_002838319.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634247|emb|CAZ82510.1| unnamed protein product [Tuber melanosporum]
          Length = 465

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 163/367 (44%), Gaps = 53/367 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+K QE A+  +L D         I Q   G+GKT   ++ M   V+   +  QA+ +AP
Sbjct: 92  PSKIQERALPLLLSDPPTN----MIGQSQSGTGKTAAFVLTMLTRVDMSVSNVQALCLAP 147

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q    ++   Q T I  +    NM        ++R     AHI++GT     D 
Sbjct: 148 SRELARQIMSVVQTMGQFTDIRTQFAIPNM--------VQRGQKIDAHIVVGTPGTVLDL 199

Query: 390 IQYYKLIL-----VIVDEQHRFGVQQ-------RLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+  +L +      ++DE      QQ       R+K    ATA  ++L +AT   + +  
Sbjct: 200 IRRKQLPVQHLKVFVLDEADNMLDQQGLGDQCLRVKQNIPATA-QIVLFSATFPDQVVQY 258

Query: 438 TSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE---VIERLKVVLSEGKKAYWICPQI 492
            +L   D ++IT K        IK + +  +  ++   ++  L  +L+ G    ++    
Sbjct: 259 ANLFAPDANQITLKHEELTVDGIKQLYMDCDSEEDKYRILVELYHILTIGSSIIFV---- 314

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            +K+E+   S ++R      H    +A +HG    +D++ V+D F++G  K+LI T V+ 
Sbjct: 315 -KKRET--ASEIQRRMEADGH---KVAALHGAQEGVDRDRVIDDFRSGRAKVLITTNVLA 368

Query: 553 VGIDVVDASIII------IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
            GIDV   S+++       +N        LH++ GR GR   +   I   H    K S++
Sbjct: 369 RGIDVATVSMVVNYDIPLDQNRRPDPQTYLHRI-GRTGRFGRVGVSISFVH---DKQSWS 424

Query: 607 RLSVLKN 613
            ++ + N
Sbjct: 425 EMNEISN 431


>gi|87310130|ref|ZP_01092262.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
 gi|87287120|gb|EAQ79022.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
          Length = 428

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 141/336 (41%), Gaps = 45/336 (13%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG-----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           Q   G+GKT    I +   +E G      QA+I+ P   LA Q  + I K T   +I V 
Sbjct: 47  QARTGTGKTAAFGIPIIERLEHGPNSRNPQALILTPTRELAVQVRDEIAKLTHGQRINVV 106

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
            + G  P   + + L+R      HI++GT     D     ++Q   L  V++DE  R   
Sbjct: 107 AVYGGKPLRSQMEKLKR----APHIVVGTPGRVIDLMTRRALQLEMLRTVVLDEADRMLD 162

Query: 407 -GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G +  ++  L +       LL++AT +P T          I K+ ++   R P K    
Sbjct: 163 IGFRPDIEKILRRCPEERQTLLLSAT-VPPT----------IEKLAQR-YMRNPEKVDFS 210

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV--------ERFNSLHEHFT 515
           P N   E IE+    +   KK   +   +  K+E   +++V        ER        T
Sbjct: 211 PTNISAETIEQRYFTVDHSKKFDMLVELL--KREQPQKAIVFCRTKRGTERITQRLSKKT 268

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +  IHG M    +   +  FK    ++L+AT V+  GID+ D S II  +   F    
Sbjct: 269 KLVHCIHGDMQQGARNRALSDFKASKFRVLVATDVVGRGIDISDVSHIINYDIPEFSDDY 328

Query: 576 LHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRLSV 610
           +H++ GR GR G+E       +  P   N  TR+ V
Sbjct: 329 VHRV-GRTGRMGKE--GIAYTFVTPEEGNELTRIEV 361


>gi|323141176|ref|ZP_08076077.1| putative DEAD-box ATP-dependent RNA helicase CshA
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414319|gb|EFY05137.1| putative DEAD-box ATP-dependent RNA helicase CshA
           [Phascolarctobacterium sp. YIT 12067]
          Length = 418

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 154/357 (43%), Gaps = 64/357 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I +   G+GKTL  L+ +A  ++      QA+++ P   LAQQ    +KK    + I V 
Sbjct: 44  IARAQTGTGKTLAFLVPLAEKIDTAKSYVQALVITPTRELAQQIATEMKKILGESDIKVL 103

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHR 405
            +TG      ++  LE    G++H++IGT     D I+           L+L  VDE  +
Sbjct: 104 AVTGGRDFETQKYKLE----GRSHVLIGTPGRLLDHIRKGNTDLGGVRYLVLDEVDEMLQ 159

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-IIP 464
            G            A  ++ MTA P  +T++ ++    ++ K+     GRK  K   +I 
Sbjct: 160 QGFMDE--------ALELIAMTA-PEHQTMLCSATLSEEVRKL-----GRKLTKNCALID 205

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN-------SLHEHFTSS 517
           IN     +E++K V              +E K     ++++R N        + +  T  
Sbjct: 206 INPDQATVEKIKQV---------CLKTTDEYKNKAVAALIDRLNPYLMIVFCMSKERTKE 256

Query: 518 IA-----------IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           +            ++HG MS   +++VM +F++   ++L+A+ +   G+DV   + ++  
Sbjct: 257 LGDWLGMQGYNVDVLHGEMSPAKRKTVMKAFRDAKIQILVASDLAARGLDVEGVTHVVNY 316

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVL---KNTEDG 617
           +  H     +H++ GR GR       I LY     K   N  T+L +L   +N E G
Sbjct: 317 DIPHDVDWYVHRI-GRTGRAGNEGEAITLYTADEVKWLRNIETKLGILMERQNLEGG 372


>gi|213851474|ref|ZP_03381372.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 77

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 41/64 (64%)

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L
Sbjct: 10  LAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLAL 69

Query: 415 TQKA 418
            +K 
Sbjct: 70  WEKG 73


>gi|283856424|ref|YP_162949.2| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|283775425|gb|AAV89838.2| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 506

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 149/350 (42%), Gaps = 49/350 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLR--ILQGDVGSGKTLVALIAMAAAVEAG------GQA 324
           PT  Q +AI  +L        M+R  I     G+GKT   ++ M   +  G       ++
Sbjct: 38  PTPVQAAAIPSVL--------MMRDLIAVAQTGTGKTASFVLPMIDILAHGRCRARMPRS 89

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E  +KY +  ++ + ++ G +P A ++ ALE+       ++I T  
Sbjct: 90  LILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEK----GVDVLIATPG 145

Query: 385 LFQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              D  +  K++L     +++DE  R     F        T+  T+   LL +AT  P  
Sbjct: 146 RLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQTLLFSATMPP-- 203

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
             +  L D  +S   +    R      +I   R+ EV  R     S+ KK   +C  +  
Sbjct: 204 -AIKKLADRFLSNPKQIEISRPATANTLI-DQRLIEVSPR-----SKKKK---LCDMLRA 253

Query: 495 KKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +K+       N ++ V +  +  E    S+  IHG MS  ++ S ++ FKNG   +L+A+
Sbjct: 254 EKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVAS 313

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +   G+DV   S +   +        +H++ GR GRG      +    P
Sbjct: 314 DIAARGLDVKGISHVFNFDVPTHPDDYIHRI-GRTGRGGASGEALTFVTP 362


>gi|326201867|ref|ZP_08191737.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325987662|gb|EGD48488.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 481

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 159/362 (43%), Gaps = 46/362 (12%)

Query: 254 PINVEGKIAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           P  ++ K++ +IL+ I      SPTK QE  I  +++          I++   GSGKT  
Sbjct: 3   PSFIDYKLSNEILKAISMLNFKSPTKVQEKVIPAVIEKKDI------IVKSQTGSGKTAA 56

Query: 310 ALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
             + +   VE      QA+++ P   LA Q  E I    +  ++ V  I G  P  ++ K
Sbjct: 57  FAVPICELVEWDENKPQALVLTPTRELAIQVKEDIFNIGRFKRLKVSAIYGKSPFYNQEK 116

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFG-VQQRLKLTQK 417
            L++    + H+++GT     D I+           L++   DE    G ++Q   +   
Sbjct: 117 ELKQ----KTHVVVGTPGRIIDHIERNTFDTSNIKYLVIDEADEMLHMGFIEQIETIVSS 172

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            +   V ++ +  +P          IDI  +  K   ++PI+  I   N   + + + + 
Sbjct: 173 LSKERVTVLLSATMP----------IDIETLCNKYM-KEPIRVEIEEQNTTTDRVHQERY 221

Query: 478 VLSEGKKAYWICP-QIEEKKESN--FRSVVERFNSLHEH---FTSSIAIIHGRMSDIDKE 531
            +    K   +    I E  +S   F +  ++ + +++    F  S   IHG M   D+ 
Sbjct: 222 DVERASKIKLLRDITIVENPDSCIIFCNTKQKVDDVYDRLLLFKYSCEKIHGGMDQRDRL 281

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL--RGRVGR-GEE 588
            VM+ FK G  + LIAT V   GID+ + S++I  +    G   +H++   GR+GR G+ 
Sbjct: 282 KVMNDFKRGYFRYLIATDVAARGIDIDNISLVINYDIPQDGETYVHRIGRTGRIGRDGKA 341

Query: 589 IS 590
           IS
Sbjct: 342 IS 343


>gi|260752364|ref|YP_003225257.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258551727|gb|ACV74673.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 506

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 149/350 (42%), Gaps = 49/350 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLR--ILQGDVGSGKTLVALIAMAAAVEAG------GQA 324
           PT  Q +AI  +L        M+R  I     G+GKT   ++ M   +  G       ++
Sbjct: 38  PTPVQAAAIPSVL--------MMRDLIAVAQTGTGKTASFVLPMIDILAHGRCRARMPRS 89

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E  +KY +  ++ + ++ G +P A ++ ALE+       ++I T  
Sbjct: 90  LILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEK----GVDVLIATPG 145

Query: 385 LFQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              D  +  K++L     +++DE  R     F        T+  T+   LL +AT  P  
Sbjct: 146 RLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQTLLFSATMPP-- 203

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
             +  L D  +S   +    R      +I   R+ EV  R     S+ KK   +C  +  
Sbjct: 204 -AIKKLADRFLSNPKQIEISRPATANTLI-DQRLIEVSPR-----SKKKK---LCDMLRA 253

Query: 495 KKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +K+       N ++ V +  +  E    S+  IHG MS  ++ S ++ FKNG   +L+A+
Sbjct: 254 EKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVAS 313

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +   G+DV   S +   +        +H++ GR GRG      +    P
Sbjct: 314 DIAARGLDVKGISHVFNFDVPTHPDDYIHRI-GRTGRGGASGEALTFVTP 362


>gi|87118190|ref|ZP_01074089.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
 gi|86165824|gb|EAQ67090.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
          Length = 461

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 164/376 (43%), Gaps = 52/376 (13%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIM 327
           F+P ++Q   +  IL D    N +L   Q   GSGKTL   I M   +     G Q ++M
Sbjct: 28  FTPIQAQ--TLPSILSD----NDIL--AQAQTGSGKTLAFAIGMLMKINPRYFGVQGLVM 79

Query: 328 APIGILAQQHYEFIKK---YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            P   LA Q  + I+K   + +N +++   + G MP   +  +LE   HG AHI++GT  
Sbjct: 80  CPTRELADQVCKEIRKTARFLENIKVLS--LCGGMPFGPQIGSLE---HG-AHIVVGTPG 133

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLK-LTQKATAPHVLLMTATPIPRTL 435
              + ++   L L     +++DE  R    G    ++ L +        LM +   P T+
Sbjct: 134 RLLEHVRKGTLRLDSLNTLVLDEADRMLDMGFVDSIRTLVESTPKKRQTLMFSATYPETI 193

Query: 436 VLTSLG---DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYWIC-P 490
              S     +    K+      +  IK   +  N+ D+    +  V  +  ++A   C  
Sbjct: 194 GKISAEFQHNPKTIKVEATQESKPDIKQFFVKSNKDDKPYALMSAVRYQNPEQAIVFCNT 253

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +IE +  ++F         L +H  S+ AI HG +   D++ V+  F N +C++L+AT V
Sbjct: 254 KIECQTIADF---------LVDHKISAKAI-HGDLEQRDRDQVLVQFSNASCRILVATDV 303

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GIDV +   +I  +         H++ GR GR       I L      K++Y     
Sbjct: 304 AARGIDVKEVDTVINYDTTRDIDVHTHRI-GRTGRAGNKGVAINLV---TDKDTYK---- 355

Query: 611 LKNTEDGFLIAEEDLK 626
           +K+ ED F I  + L+
Sbjct: 356 VKDIEDRFEIQADYLE 371


>gi|238758478|ref|ZP_04619655.1| ATP-independent RNA helicase dbpA [Yersinia aldovae ATCC 35236]
 gi|238703382|gb|EEP95922.1| ATP-independent RNA helicase dbpA [Yersinia aldovae ATCC 35236]
          Length = 457

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 160/349 (45%), Gaps = 60/349 (17%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           T  Q +A+  IL  QD+  K +         GSGKT    I +   +  G    QA+I+ 
Sbjct: 25  TPVQAAALPAILNGQDVRAKAK--------TGSGKTAAFGIGLLDKIAVGEFVTQALILC 76

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q       + ++TQN +I+   + G  P  H+   L+ + H   HI++GT   
Sbjct: 77  PTRELADQVSKELRRLARFTQNIKILT--LCGGQPMGHQ---LDSLVHA-PHIVVGTPGR 130

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTS 439
            Q+ ++   L+L     +++DE  R        L    T     ++  TP+ R TL+ ++
Sbjct: 131 IQEHLRKKTLVLDELKILVLDEADRM-------LDMGFTDAIDDVIAYTPVQRQTLLFSA 183

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEKKE 497
                I +I+ +   R+P+    + ++  DE   IE++    +  K+   +   +   + 
Sbjct: 184 TYPAGIERISAR-VQREPLN---VEVDDGDEEPAIEQVLFETTREKRLPLLISVLSHYQP 239

Query: 498 SN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +   F +  +   S++E   S   S+  +HG +   D++ V+  F N +C++L+AT V 
Sbjct: 240 DSCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANHSCRVLVATDVA 299

Query: 552 EVGIDVVDASIIIIENAEHFGLA---QLHQLR-GRVGR----GEEISSC 592
             G+D+ D ++++     +F LA   ++H  R GR GR    G  +S C
Sbjct: 300 ARGLDIKDLALVV-----NFELAFDPEVHVHRIGRTGRAGMSGLAVSLC 343


>gi|118589362|ref|ZP_01546768.1| ATP-DEPENDENT RNA HELICASE DEAD [Stappia aggregata IAM 12614]
 gi|118438062|gb|EAV44697.1| ATP-DEPENDENT RNA HELICASE DEAD [Stappia aggregata IAM 12614]
          Length = 697

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 149/361 (41%), Gaps = 76/361 (21%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----GQA----- 324
           T  QES    +L D   +  +L  +    GSGKT+   +A+A  +  G    GQA     
Sbjct: 24  TSVQES----VLSDAPPEADLL--VSAQTGSGKTVAFGLALAPTLLDGKDTLGQAGAPIA 77

Query: 325 VIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           + +AP   LA Q   E    Y +   +    + G  P+  RR  LER      HI++GT 
Sbjct: 78  LAIAPTRELALQVKEELTWLYNEAGAVTASCVGGMDPRMERR-TLER----GVHIVVGTP 132

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATAPH---VLLMTATPIP 432
              +D I+   L L     V++DE       G ++ L+    A AP     L+ +AT +P
Sbjct: 133 GRLRDHIERGALDLSEIKAVVLDEADEMLDMGFREDLEFILDA-APQDRRTLMFSAT-VP 190

Query: 433 RTLV------------LTSL------GDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
           R +             L+++      GDID             +   + P  R + +I  
Sbjct: 191 RQIAELAKRFQKDAVRLSTINAREQHGDIDY------------VAHPVAPNERENAIINV 238

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L+    E +KA   C         + R  V R  S   +   SI  + G +S   + S +
Sbjct: 239 LR--QHEAEKAIVFC---------STREAVSRLTSRLANRGFSIVSLSGELSQEQRSSAL 287

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            + K+G  ++ +AT V   GID+ +  ++I  +      A LH+  GR GR     +C+L
Sbjct: 288 AAMKDGRARVCVATDVAARGIDLPNLDLVIHADLPTGKAALLHR-SGRTGRAGRKGTCVL 346

Query: 595 L 595
           +
Sbjct: 347 M 347


>gi|238783457|ref|ZP_04627480.1| ATP-independent RNA helicase dbpA [Yersinia bercovieri ATCC 43970]
 gi|238715702|gb|EEQ07691.1| ATP-independent RNA helicase dbpA [Yersinia bercovieri ATCC 43970]
          Length = 511

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 159/348 (45%), Gaps = 58/348 (16%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           T  Q +A+  IL  QD+  K +         GSGKT    I +   +  G    QA+++ 
Sbjct: 79  TPVQAAALPAILNGQDVRAKAK--------TGSGKTAAFGIGLLDKIAVGEFVTQALVLC 130

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q       + ++TQN +I+   + G  P  H+   L+ + H   HI++GT   
Sbjct: 131 PTRELADQVSKELRRLARFTQNIKILT--LCGGQPMGHQ---LDSLVHA-PHIVVGTPGR 184

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            Q+ ++   L+L     +++DE  R      L +        V+  T  P  +TL+ ++ 
Sbjct: 185 IQEHLRKKTLVLDDLKILVLDEADRM-----LDMGFTDAIDDVIAYTP-PQRQTLLFSAT 238

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEV--IERLKVVLSEGKKAYWICPQIEEKKES 498
               I +I+ +   R+P+    + ++  DE   IE+L    +  K+   +   +   + +
Sbjct: 239 YPAGIEQISAR-VQRQPVN---VEVDDGDEAPAIEQLFFETTREKRLPLLISVLSHYQPA 294

Query: 499 N---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +   F +  +   S++E   S   S+  +HG +   D++ V+  F N +C++L+AT V  
Sbjct: 295 SAVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 354

Query: 553 VGIDVVDASIIIIENAEHFGLA---QLHQLR-GRVGR----GEEISSC 592
            G+D+ D  +++     +F LA   ++H  R GR GR    G  +S C
Sbjct: 355 RGLDIKDLELVV-----NFELAFDPEVHVHRIGRTGRAGMSGLAVSLC 397


>gi|241762057|ref|ZP_04760141.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373523|gb|EER63110.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 506

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 149/350 (42%), Gaps = 49/350 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLR--ILQGDVGSGKTLVALIAMAAAVEAG------GQA 324
           PT  Q +AI  +L        M+R  I     G+GKT   ++ M   +  G       ++
Sbjct: 38  PTPVQATAIPSVL--------MMRDLIAVAQTGTGKTASFVLPMIDILAHGRCRARMPRS 89

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E  +KY +  ++ + ++ G +P A ++ ALE+       ++I T  
Sbjct: 90  LILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEK----GVDVLIATPG 145

Query: 385 LFQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              D  +  K++L     +++DE  R     F        T+  T+   LL +AT  P  
Sbjct: 146 RLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQTLLFSATMPP-- 203

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
             +  L D  +S   +    R      +I   R+ EV  R     S+ KK   +C  +  
Sbjct: 204 -AIKKLADRFLSNPKQIEISRPATANTLI-DQRLIEVSPR-----SKKKK---LCDMLRA 253

Query: 495 KKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +K+       N ++ V +  +  E    S+  IHG MS  ++ S ++ FKNG   +L+A+
Sbjct: 254 EKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVAS 313

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +   G+DV   S +   +        +H++ GR GRG      +    P
Sbjct: 314 DIAARGLDVKGISHVFNFDVPTHPDDYIHRI-GRTGRGGASGEALTFVTP 362


>gi|197294292|ref|YP_001798833.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
 gi|171853619|emb|CAM11490.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
          Length = 564

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 136/311 (43%), Gaps = 39/311 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   G+GKT    I +   ++   +  Q++I+ P   L  Q YE +KK  +   QI +
Sbjct: 44  IGQAQTGTGKTFAFGIPIIEKIDYKLSKTQSLILCPTRELTLQVYEELKKLLRYYPQIRI 103

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQH 404
            ++ G      + +ALE     + H+II T     D I+  K        L L   DE  
Sbjct: 104 AVVFGGESYTKQFRALE----SKPHLIIATPGRVIDHIERGKIDLSALKILTLDEADEML 159

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + G Q+ L+  L Q       +L +AT  P            I +I  K   +K  K + 
Sbjct: 160 KMGFQEALETILKQIPEERQTVLFSATLPP-----------SIKQIASK--YQKNTKILQ 206

Query: 463 IPINRID-EVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFT 515
           +P+ ++    IE+   ++ E  K   +   ++ K++      +N +  V+   S  +   
Sbjct: 207 VPVKKLAVNAIEQYYFLVKEFDKNKLLVRLLDLKRDYSTILFANTKKDVDEITSFLQDKG 266

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
                +HG +    ++ VM++F+ G  K+LIAT V   GID+ D  +++  +  H     
Sbjct: 267 FLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAARGIDISDIKMVVNYDLPHEDEVY 326

Query: 576 LHQLRGRVGRG 586
           +H++ GR GR 
Sbjct: 327 VHRI-GRTGRA 336


>gi|75764035|ref|ZP_00743644.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488480|gb|EAO52087.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 163

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 13/158 (8%)

Query: 156 IEAVYSLPTGLSVDLFKKIIVEAL-----SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH 210
           +E VYS+   L+V   ++ I +AL     S + VLP+     LL +       EA   +H
Sbjct: 1   MEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEVLPD----GLLGRYKLLPRYEALKALH 56

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNI 269
            P   +D +    AR R  Y+E    Q+ +  +RK + +   G    +     Q+ +  +
Sbjct: 57  FPVGQEDLK---QARRRFVYEEFFLFQLKMQTLRKMERENSKGTKKEIPSVELQEFIDAL 113

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           PF  T +Q   + +IL+DM+   RM R+LQGDVGSG +
Sbjct: 114 PFPLTGAQRRVVDEILKDMTSLYRMNRLLQGDVGSGNS 151


>gi|218130843|ref|ZP_03459647.1| hypothetical protein BACEGG_02438 [Bacteroides eggerthii DSM 20697]
 gi|217987187|gb|EEC53518.1| hypothetical protein BACEGG_02438 [Bacteroides eggerthii DSM 20697]
          Length = 448

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 146/364 (40%), Gaps = 57/364 (15%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           ILRN+       Q + +++  +D  Q N+ L +L    GSGKTL  L+ +  +++A   G
Sbjct: 6   ILRNLQIE----QLTPMQEAARDAYQSNKDL-VLLSPTGSGKTLAFLLPLVQSLKADVQG 60

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QAV++ P   LA Q     K  + N         G  P     + +  I      +IIG
Sbjct: 61  VQAVVLVPSRELALQIETVFK--SMNVPFKAMSCYGGRPAMEEHRTMRGI---NPAVIIG 115

Query: 382 THALFQD-----SIQYYKLILVIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPI 431
           T     D     + + + +  +++DE  +   FG    +   + Q       +L++AT  
Sbjct: 116 TPGRMNDHLRKRNFEVHSVTTLVIDEFDKCLEFGFHDEMAEVIGQLPALQKRVLLSATDA 175

Query: 432 PRTLVLTSLG------DIDISKI-------TEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                   +G      D   S++        E  + R  ++ VI P     E + RL   
Sbjct: 176 EEIPQFAGVGGAVSGSDTPSSQVIRLNFLSEEAVSNRLDLQKVISPEKDKLETLYRLLCT 235

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L +     ++          N+R  VER  +  +         HG M   D+E  +  F+
Sbjct: 236 LGDRSTLVFV----------NYRESVERVAAYLKSKKFPCDAFHGGMEQEDRERALYKFR 285

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQLHQLRGRVGRGEEISSCI 593
           NG+C +L++T +   G+D+       I+N  H+ +     A  H+  GR  R E   S  
Sbjct: 286 NGSCPVLVSTDLAARGLDIPG-----IDNVVHYHMPVNEEAFTHR-NGRTARWEARGSSF 339

Query: 594 LLYH 597
           LL H
Sbjct: 340 LLLH 343


>gi|238789022|ref|ZP_04632811.1| ATP-independent RNA helicase dbpA [Yersinia frederiksenii ATCC
           33641]
 gi|238722786|gb|EEQ14437.1| ATP-independent RNA helicase dbpA [Yersinia frederiksenii ATCC
           33641]
          Length = 460

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 157/355 (44%), Gaps = 72/355 (20%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           T  Q +A+  IL  QD+  K +         GSGKT    I +   +  G    QA+I+ 
Sbjct: 28  TPVQAAALPAILNGQDVRAKAK--------TGSGKTAAFGIGLLDKIAVGEFVTQALILC 79

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q       + ++TQN +I+   + G  P  H+   L+ + H   HI++GT   
Sbjct: 80  PTRELADQVSKELRRLARFTQNIKILT--LCGGQPMGHQ---LDSLVHA-PHIVVGTPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHR---------------FGVQQRLKLTQKATAPHVLL 425
            Q+ ++   L+L     +++DE  R               +   QR  L   AT P  + 
Sbjct: 134 IQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSATYPVGIE 193

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
             +  + R  V   + D D     E+PA    I+ V     R ++ +  L  VLS  + A
Sbjct: 194 RISARVQRQPVNVEVEDGD-----EEPA----IEQVFFETTR-EKRLPLLIAVLSHYQPA 243

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             +   +    + + +SV   F +L     S +A+ HG +   D++ V+  F N +C++L
Sbjct: 244 SCV---VFCNTKKDCQSV---FEALESRGISVLAL-HGDLEQRDRDQVLVRFSNRSCRVL 296

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLA---QLHQLR-GRVGR----GEEISSC 592
           +AT V   G+D+ D ++++     +F LA   ++H  R GR GR    G  +S C
Sbjct: 297 VATDVAARGLDIKDLALVV-----NFELAFDPEVHVHRIGRTGRAGMSGLAVSLC 346


>gi|268532476|ref|XP_002631366.1| Hypothetical protein CBG03203 [Caenorhabditis briggsae]
          Length = 630

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 167/391 (42%), Gaps = 82/391 (20%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT+ QE+A+  +L +         I Q   G+GKT   ++ M   ++      Q + +AP
Sbjct: 249 PTRIQETALPLLLMEPPSN----LIAQAQSGTGKTAAFVLTMLCRIDINLKCPQCICLAP 304

Query: 330 IGILAQQHYEFIKK---YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA+Q  E ++K   Y +N +I   I  GNM     RK  E+I       +IGT  + 
Sbjct: 305 TLELAKQIGEVVEKMGRYMENLKIHYAIKGGNMAAMRGRKLTEQI-------VIGTPGIT 357

Query: 387 QDSIQYYKLI------LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           +D +Q YK I       +++DE       Q    T  +T  + ++  A+   ++++ ++ 
Sbjct: 358 RDYLQKYKCIDPSQIRCLVLDEADVMIYHQ--GFTDISTTIYNMVEEASDSVQSMLFSAT 415

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D  +     K           I  N I  +++R +  L   K+ +  C      ++S +
Sbjct: 416 YDEPVINFATK-----------IIKNAIVVMLKREEQALPNIKQFFVQC----ACRDSKY 460

Query: 501 RSVVERFNS------------------LHEHFTS---SIAIIHGRMSDIDKESVMDSFKN 539
            ++V  ++                   L+E+  +    + ++HG MS +++   +  FK 
Sbjct: 461 AAIVNLYSGLAVASSVIFCHTKASVMWLYENMKARGHKVDVLHGDMSVVERADTIIRFKR 520

Query: 540 GTCKLLIATTVIEVGIDVVDASIII-----IENAEH------FGLAQ------LHQLRGR 582
           G  K+LI T V   GIDV   S++I     I+  EH       G  Q      LH++ GR
Sbjct: 521 GDFKVLITTNVFARGIDVAQVSVVINYDLPIKYNEHDSPMVIDGFTQPDCETYLHRI-GR 579

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            GR  +    I L     S++S   ++VL+N
Sbjct: 580 TGRFGKTGIAINLID---SEDSMNMINVLEN 607


>gi|213420842|ref|ZP_03353908.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 89

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 50/78 (64%), Gaps = 5/78 (6%)

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY-HP-PLSKNSYTRLSVLKNTED---GFLIAE 622
           A+HFGLAQLHQLRGRVGR    +   LL  HP  ++ ++  RL  + + ED   GF +A 
Sbjct: 2   ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDLGAGFALAT 61

Query: 623 EDLKQRKEGEILGIKQSG 640
            DL+ R  GE+LG +QSG
Sbjct: 62  HDLEIRGAGELLGEEQSG 79


>gi|302391501|ref|YP_003827321.1| single-stranded-DNA-specific exonuclease RecJ [Acetohalobium
            arabaticum DSM 5501]
 gi|302203578|gb|ADL12256.1| single-stranded-DNA-specific exonuclease RecJ [Acetohalobium
            arabaticum DSM 5501]
          Length = 1210

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 150/340 (44%), Gaps = 40/340 (11%)

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA---VIMAPIGILAQ 335
            S  K++L  +      L I     G+G+   A+    AA++A  Q    VI+ P+  L  
Sbjct: 739  SKQKEVLTTLDNDQDTLAIF----GTGRGKSAIFQSYAALQALNQGRITVILYPLRALVN 794

Query: 336  QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
              ++ +KK      + +    G++    R K +  + HG+  I++ T    +  +  ++ 
Sbjct: 795  DQFDSLKKNLAPLGLDIYKANGSLSVGEREKLITALNHGELDIVLTTPEFMEYHLDKFQN 854

Query: 396  I-----LVIVDEQHRFGVQ--------QRL-KLTQKATAPHVLLMTATP---IPRTLVLT 438
            +      ++VDE H  G+         +RL KL  K   P VL +TAT    + R ++ T
Sbjct: 855  LADEIGFLVVDESHHIGMASSSFRPTYKRLGKLNSKLGNPLVLAVTATANNQVAREIIET 914

Query: 439  SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
                ++I +I   P  R  ++ +     R  E    L  V S G+K+       E+  E 
Sbjct: 915  ----LNIGEIIIDPHVRSNLEIIDKRGCRDKEAY--LYEVASSGEKSIIYVNSREQSIEL 968

Query: 498  -SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             SN R   +R   L E     I   +  +++ ++  +   F +G  K++++T+    GID
Sbjct: 969  ASNLR---QRLPGLAEE----IGFYNAGLTNKERNRIESMFWSGKLKIIVSTSAFGEGID 1021

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            + D   I++ +  +F L + +Q  GRVGR  + +   LL+
Sbjct: 1022 IPDIRNIVLYHL-NFNLTEFNQQSGRVGRDGKQAKIHLLF 1060


>gi|123442077|ref|YP_001006060.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089038|emb|CAL11856.1| ATP-dependent RNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 460

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 153/358 (42%), Gaps = 78/358 (21%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           T  Q +A+  IL  QD+  K +         GSGKT    I +   +  G    QA+++ 
Sbjct: 28  TPVQAAALPAILNGQDVRAKAK--------TGSGKTAAFGIGLLDKIAVGEFVTQALVLC 79

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q       + ++TQN +I+   + G  P  H+   L+ + H   HI++GT   
Sbjct: 80  PTRELADQVSKELRRLARFTQNIKILT--LCGGQPMGHQ---LDSLVHA-PHIVVGTPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHR---------------FGVQQRLKLTQKATAPHVLL 425
            Q+ ++   L+L     +++DE  R               +   QR  L   AT P  + 
Sbjct: 134 IQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSATYPAGIE 193

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
             +  + R  V   + D D     E PA    I+ V     R ++ +  L  VLS  + A
Sbjct: 194 QISARVQRQPVNVEVDDGD-----EAPA----IEQVFFETTR-EKRLPLLISVLSHYQPA 243

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTC 542
             +           F +  +   S++E   S   S+  +HG +   D++ V+  F N +C
Sbjct: 244 SCVV----------FCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSC 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLA---QLHQLR-GRVGR----GEEISSC 592
           ++L+AT V   G+D+ D  +++     +F LA   ++H  R GR GR    G  +S C
Sbjct: 294 RVLVATDVAARGLDIKDLELVV-----NFELAFDPEVHVHRIGRTGRAGMSGLAVSLC 346


>gi|13473704|ref|NP_105272.1| DEAD-box protein, ATP-independent RNA helicase [Mesorhizobium loti
           MAFF303099]
 gi|14024455|dbj|BAB51058.1| DEAD-BOX protein, ATP-independent RNA helicase [Mesorhizobium loti
           MAFF303099]
          Length = 620

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 129/314 (41%), Gaps = 40/314 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQN------- 347
           ++    GSGKT+   +AMA  +  G +     MAP+ +      E   + T+        
Sbjct: 39  LVSAQTGSGKTVAFGLAMAPTLLDGAERFGAAMAPLALAVAPTRELALQVTRELEWLYEP 98

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDE 402
           T   V    G M     R+ALER     AHI++GT    +D     S+    L  V++DE
Sbjct: 99  TGATVASCVGGMDMRTERRALER----GAHIVVGTPGRLRDHITRNSLDMSALKAVVLDE 154

Query: 403 QHR---FGVQQRLK-LTQKATAPHVLLMTATPIPRTLVLTSLG-DIDISKITEKPAGRKP 457
                  G ++ L+ +   A A    LM +  +PR++   + G   D  +I+     ++ 
Sbjct: 155 ADEMLDLGFREDLEFILDAAPAERRTLMFSATVPRSIATLAQGYQRDAVRISAAGEEKQH 214

Query: 458 IKTVIIPIN-----RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           +      +N     R + +I  L+    E K A   C         N R+ V    +   
Sbjct: 215 LDIEYRALNVAQADRENAIINVLR--FYEAKNALVFC---------NTRAAVNHLTARFN 263

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   S+  + G +S  ++   + + ++G  K+ IAT V   GID+ +  ++I  +     
Sbjct: 264 NRNFSVVALSGELSQNERSHALQAMRDGRAKVCIATDVAARGIDLPNLELVIHADLPTNP 323

Query: 573 LAQLHQLRGRVGRG 586
              LH+  GR GR 
Sbjct: 324 ETLLHR-SGRTGRA 336


>gi|260469782|ref|ZP_05813939.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259028428|gb|EEW29747.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 620

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 131/314 (41%), Gaps = 40/314 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +  G           A+ +AP   LA Q    ++   + 
Sbjct: 39  LVSAQTGSGKTVAFGLAMAPTLLDGADRFAPATAPLALAVAPTRELALQVTRELEWLYEM 98

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDE 402
           T   V    G M     R+ALER     AHI++GT    +D     S+    L  V++DE
Sbjct: 99  TGATVASCVGGMDMRTERRALER----GAHIVVGTPGRLRDHITRNSLDMSALKAVVLDE 154

Query: 403 QHR---FGVQQRLK-LTQKATAPHVLLMTATPIPRTLVLTSLG-DIDISKITEKPAGRKP 457
                  G ++ L+ +   A A    LM +  +PR++   + G   D  +I+     ++ 
Sbjct: 155 ADEMLDLGFREDLEFILDAAPAERRTLMFSATVPRSIATLAQGYQRDAVRISAAGEEKQH 214

Query: 458 IKT-----VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           +        + P +R + +I  L+    E K A   C         N R+ V    +   
Sbjct: 215 LDIEYRALSVAPADRENAIINVLR--FYEAKNALVFC---------NTRAAVNHLTARFN 263

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   S+  + G +S  ++   + + ++G  K+ IAT V   GID+ +  ++I  +     
Sbjct: 264 NRNFSVVALSGELSQNERSHALQAMRDGRAKVCIATDVAARGIDLPNLELVIHADLPTNP 323

Query: 573 LAQLHQLRGRVGRG 586
              LH+  GR GR 
Sbjct: 324 ETLLHR-SGRTGRA 336


>gi|332162007|ref|YP_004298584.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666237|gb|ADZ42881.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 460

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 153/358 (42%), Gaps = 78/358 (21%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           T  Q +A+  IL  QD+  K +         GSGKT    I +   +  G    QA+++ 
Sbjct: 28  TPVQAAALPAILNGQDVRAKAK--------TGSGKTAAFGIGLLDKIAVGEFVTQALVLC 79

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q       + ++TQN +I+   + G  P  H+   L+ + H   HI++GT   
Sbjct: 80  PTRELADQVSKELRRLARFTQNIKILT--LCGGQPMGHQ---LDSLVHA-PHIVVGTPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHR---------------FGVQQRLKLTQKATAPHVLL 425
            Q+ ++   L+L     +++DE  R               +   QR  L   AT P  + 
Sbjct: 134 IQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSATYPAGIE 193

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
             +  + R  V   + D D     E PA    I+ V     R ++ +  L  VLS  + A
Sbjct: 194 QISARVQRQPVNVEVDDGD-----EAPA----IEQVFFETTR-EKRLPLLISVLSHYQPA 243

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTC 542
             +           F +  +   S++E   S   S+  +HG +   D++ V+  F N +C
Sbjct: 244 SCVV----------FCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSC 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLA---QLHQLR-GRVGR----GEEISSC 592
           ++L+AT V   G+D+ D  +++     +F LA   ++H  R GR GR    G  +S C
Sbjct: 294 RVLVATDVAARGLDIKDLELVV-----NFELAFDPEVHVHRIGRTGRAGMSGLAVSLC 346


>gi|325297384|ref|YP_004257301.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324316937|gb|ADY34828.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 439

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 143/341 (41%), Gaps = 44/341 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    GSGKTL  L+ + + ++ G    QAV++ P   LA Q  +  +     T+  V 
Sbjct: 33  ILLSPTGSGKTLAYLLPLLSFLKPGVKGVQAVVLVPSRELALQIDQVFR--AMGTEYNVM 90

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK-----LILVIVDEQHR--- 405
              G  P     + ++ +      +IIGT     D +Q        + L+++DE  +   
Sbjct: 91  SCYGGRPAMDEHRVMKNV---NPAVIIGTPGRMNDHLQKANFDASAVRLLVIDEFDKCLE 147

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATP---IPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           FG Q+ +   + Q        L++AT    IPR   L  +  +D  +     + R  +  
Sbjct: 148 FGFQEEMASVMGQLPRIERRFLLSATDAEEIPRFTGLRRVRKLDFLRPEHVLSSRLHLYK 207

Query: 461 VIIPI-NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           V+ P+ +++D +   L  + +E    +            N R  VER             
Sbjct: 208 VVSPVKDKLDTLFRLLCCIGNESTLVF-----------CNHRESVERVGEYLRRMKMYCE 256

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----A 574
           + HG M   ++E  +  F+NG+C +L++T +   G+D+ +     I+N  H+ L     +
Sbjct: 257 VFHGGMGQDERERALYKFRNGSCPVLVSTDLAARGLDIPE-----IKNVVHYHLPVSEDS 311

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
            +H+  GR  R E   +  +L +   +  SY     L++ E
Sbjct: 312 FIHR-NGRTARWENEGNAYVLAYQEEALPSYLPEDALEDYE 351


>gi|318606043|emb|CBY27541.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 460

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 153/358 (42%), Gaps = 78/358 (21%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           T  Q +A+  IL  QD+  K +         GSGKT    I +   +  G    QA+++ 
Sbjct: 28  TPVQAAALPAILNGQDVRAKAK--------TGSGKTAAFGIGLLDKIAVGEFVTQALVLC 79

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q       + ++TQN +I+   + G  P  H+   L+ + H   HI++GT   
Sbjct: 80  PTRELADQVSKELRRLARFTQNIKILT--LCGGQPMGHQ---LDSLVHA-PHIVVGTPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHR---------------FGVQQRLKLTQKATAPHVLL 425
            Q+ ++   L+L     +++DE  R               +   QR  L   AT P  + 
Sbjct: 134 IQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSATYPAGIE 193

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
             +  + R  V   + D D     E PA    I+ V     R ++ +  L  VLS  + A
Sbjct: 194 QISARVQRQPVNVEVDDGD-----EAPA----IEQVFFETTR-EKRLPLLISVLSHYQPA 243

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTC 542
             +           F +  +   S++E   S   S+  +HG +   D++ V+  F N +C
Sbjct: 244 SCVV----------FCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSC 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLA---QLHQLR-GRVGR----GEEISSC 592
           ++L+AT V   G+D+ D  +++     +F LA   ++H  R GR GR    G  +S C
Sbjct: 294 RVLVATDVAARGLDIKDLELVV-----NFELAFDPEVHVHRIGRTGRAGMSGLAVSLC 346


>gi|330902004|gb|EGH33327.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 265

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 123/268 (45%), Gaps = 24/268 (8%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L+K+       ET   D+LF+ P  + DR     I  +   +   I
Sbjct: 9   VTALKGVGEAMAEKLAKV-----GLET-LQDVLFHLPLRYQDRTRIVPIGALRPGQDAVI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S  +   + KRR   + L DGTG ++L  FY  +   K     G  +   G+ +  
Sbjct: 63  EGVVSG-ADVVMGKRRSLLVRLGDGTGVVSL-RFYHFSNAQKESMKRGTHLRCFGEARPG 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
            + + + HP Y    + D   P+   +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 121 ASGLEIYHPEYRA-ITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDELLAGQIAL 240
           W+ ++L +      + +A   +H+P    D E       W   A+ RLA++ELL  Q++ 
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVEELALGHHW---AQHRLAFEELLTHQLSQ 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRN 268
             +R+  + +    + V  K+ ++ L+N
Sbjct: 237 QRLRESLRSQRAPALPVAKKLPKQFLQN 264


>gi|114769431|ref|ZP_01447057.1| primosomal protein N' [alpha proteobacterium HTCC2255]
 gi|114550348|gb|EAU53229.1| primosomal protein N' [alpha proteobacterium HTCC2255]
          Length = 737

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 50/311 (16%)

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKIL------RN 268
           +D +  +PARER+   ++L     +    K+ K+   + I+V +G ++Q  +      R+
Sbjct: 131 RDVDRMTPARERVL--KILKDTADMQFTGKELKEAANVTISVIKGLVSQGAVTELESPRD 188

Query: 269 IPFS------PTKSQESAIKDILQDMSQKNRM----LRILQGDVGSGKTLVALIAMAAAV 318
           IP++      P+K   SA KD    + +  RM      +L+G  GSGKT V L A+A  +
Sbjct: 189 IPYAELDPCLPSKKLTSAQKDAGDRLRKNIRMNTYNTTLLRGITGSGKTEVYLEAVAECL 248

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKK-YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             G QA+I+ P   L  +  + +KK + Q        +T       +R+    +A  +A 
Sbjct: 249 LLGKQALILIPEIALTVEFLDRLKKRFGQKPAQWHSGVT----MTEKRRCWRMVAEAKAQ 304

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ--------RLKLTQKATAPH--VLLMT 427
           +++G  +     + +  L L++VDE+H    +Q        R     +A+     V+L +
Sbjct: 305 VVVGARSSLY--LPFKNLGLIVVDEEHDTSYKQEDGVLYSARDMAVMRASIEQGSVILAS 362

Query: 428 ATPIPRTLVLTSLGDIDISKITEK-PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           ATP   T V    G  +   +TE+    R P    I  I+  D+ +ER            
Sbjct: 363 ATPSLETWVNADTGKYNRVDLTERFGDARIP---EIFTIDMRDQPMER----------NS 409

Query: 487 WICPQIEEKKE 497
           WI PQ++E+ E
Sbjct: 410 WISPQLKEEVE 420


>gi|317476039|ref|ZP_07935291.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907677|gb|EFV29379.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 448

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 146/364 (40%), Gaps = 57/364 (15%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           ILRN+       Q + +++  +D  Q N+ L +L    GSGKTL  L+ +  +++A   G
Sbjct: 6   ILRNLQIE----QLTPMQEAARDAYQSNKDL-VLLSPTGSGKTLAFLLPLVQSLKADVQG 60

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QAV++ P   LA Q     K  + N         G  P     + +  I      +IIG
Sbjct: 61  VQAVVLVPSRELALQIETVFK--SMNVPFKSMSCYGGRPAMEEHRTMRGI---NPAVIIG 115

Query: 382 THALFQD-----SIQYYKLILVIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPI 431
           T     D     + + + +  +++DE  +   FG    +   + Q       +L++AT  
Sbjct: 116 TPGRMNDHLRKRNFEVHSVTTLVIDEFDKCLEFGFHDEMAEVIGQLPALQKRVLLSATDA 175

Query: 432 PRTLVLTSLG------DIDISKI-------TEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                   +G      D   S++        E  + R  ++ VI P     E + RL   
Sbjct: 176 EEIPQFAGVGGAVSGSDAPSSQVIRLNFLSEEAVSNRLDLQKVISPEKDKLETLYRLLCT 235

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L +     ++          N+R  VER  +  +         HG M   D+E  +  F+
Sbjct: 236 LGDRSTLVFV----------NYRESVERVAAYLKSKKFPCDAFHGGMEQEDRERALYKFR 285

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQLHQLRGRVGRGEEISSCI 593
           NG+C +L++T +   G+D+       I+N  H+ +     A  H+  GR  R E   S  
Sbjct: 286 NGSCPVLVSTDLAARGLDIPG-----IDNVVHYHMPVNEEAFTHR-NGRTARWEARGSSF 339

Query: 594 LLYH 597
           LL H
Sbjct: 340 LLLH 343


>gi|167590125|ref|ZP_02382513.1| ATP-dependent DNA helicase RecG [Burkholderia ubonensis Bu]
          Length = 262

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 10/210 (4%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      I E+    I    G +   +    + RR   + + DG 
Sbjct: 47  TRSIDLVLHLPMRYEDETTLTPIDELLPGGIAQTEGVVFD-NEVAYRPRRQLVVKIQDGD 105

Query: 99  G-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
           G ++ L F       +K +   G+++ V G ++     + MVHP     +       ++ 
Sbjct: 106 GAQLVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGMEMVHPAVRVVDEHAPLPQVLT 164

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            VY    G+S    +K I  A+ R P+   LP  I++  L+    PS+A+A  I+H+P  
Sbjct: 165 PVYPSTAGVSQAYLRKAIENAVERTPLPELLPPEIDRAYLKPLGVPSLADAVRILHHPGV 224

Query: 215 AKD----FEWTSPARERLAYDELLAGQIAL 240
             D     + + PA  R+ +DELLA Q++L
Sbjct: 225 DSDEPALMDGSHPAWTRIKFDELLAQQLSL 254


>gi|313887901|ref|ZP_07821580.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846067|gb|EFR33449.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 544

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 147/338 (43%), Gaps = 49/338 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           SP++ QE+ I  IL+          + Q   G+GKT    I M   +E      Q +++ 
Sbjct: 23  SPSEVQEATIPLILEGRDV------LAQAQTGTGKTASFGIPMIEGIEDKSHNLQGLVLV 76

Query: 329 PIGILAQQHYEFIKKYTQNTQII--VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           P   LA+Q  + +KK  +  + I  V I  G    A   K L  +  G A I++GT    
Sbjct: 77  PTRELARQVSDELKKLAKYKKFISIVPIYGG----ADMGKQLRDLKKG-ADIVVGTPGRV 131

Query: 387 QDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D ++   ++L  +        DE    G +  +K   + T P    L  +AT       
Sbjct: 132 MDHMKRKTIVLDDLKFLTLDEADEMFDMGFRDDMKTIIEKTNPDRQTLFFSATFDNDIKE 191

Query: 437 LTSLGDIDISK--ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQI 492
            + L  +D +K  I +K    + I+   + +NR    E++ RL +++ + KK+   C   
Sbjct: 192 FSRLYQVDPAKVIIEKKELTAEKIEQFYLELNRNMKTEILNRL-ILIHKPKKSIIFC--- 247

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N + +VE            +  +HG M    +++VM  F+NGT  +LIAT V  
Sbjct: 248 ------NTKRMVEALELEIAQRGYKVDSLHGDMRQSSRDNVMKKFRNGTIDVLIATDVAA 301

Query: 553 VGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRG 586
            G+DV D  ++    + + AE++    +H++ GR  R 
Sbjct: 302 RGLDVSDIDLVFNYDLPQQAEYY----VHRI-GRTARA 334


>gi|212693252|ref|ZP_03301380.1| hypothetical protein BACDOR_02763 [Bacteroides dorei DSM 17855]
 gi|212664203|gb|EEB24775.1| hypothetical protein BACDOR_02763 [Bacteroides dorei DSM 17855]
          Length = 461

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 131/322 (40%), Gaps = 42/322 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    GSGKTL  L+ +  +++    G QA+++ P   LA Q  +  K  + NT     
Sbjct: 56  ILLSPTGSGKTLAYLLPLVQSLKPGITGVQAIVLVPSRELALQIDQVFK--SMNTPFKAV 113

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK-----LILVIVDEQHR--- 405
              G  P     + ++ +   Q  +IIGT     D +         + ++I+DE  +   
Sbjct: 114 SCYGGRPAMEEHRTIKGV---QPSVIIGTPGRMNDHLSKQNFDADTVSILIIDEFDKCLE 170

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATP---IPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           FG Q+ +   + Q        L++AT    IP+   L     ++     E+   R  +  
Sbjct: 171 FGFQEEMATVIGQLPGLQRRFLLSATDAEEIPQFTGLNKTIKLNFLNPEEQLTQRLHLYK 230

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           V+ P     E + +L   L   +     C         N R  VER     +       I
Sbjct: 231 VLSPEKDKLETLYKLLCTLG-SQSTLVFC---------NHRESVERVGKYLQSKKFQCGI 280

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQ 575
            HG M   D+E  +  F+NG+C +LI+T +   G+D+ +     IEN  H+ L       
Sbjct: 281 FHGGMEQDDRERSLYKFRNGSCHVLISTDLAARGLDIPE-----IENVVHYHLPANEDGY 335

Query: 576 LHQLRGRVGRGEEISSCILLYH 597
           +H+  GR  R E   +  ++ H
Sbjct: 336 IHR-NGRTARWEAEGNSYVILH 356


>gi|189460779|ref|ZP_03009564.1| hypothetical protein BACCOP_01426 [Bacteroides coprocola DSM 17136]
 gi|189432498|gb|EDV01483.1| hypothetical protein BACCOP_01426 [Bacteroides coprocola DSM 17136]
          Length = 438

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 132/332 (39%), Gaps = 42/332 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +L    GSGKTL  L+ + ++++ G Q   AVI+ P   LA Q  +  K  + NT+  + 
Sbjct: 33  VLLSPTGSGKTLAYLLPLVSSLKPGQQGVQAVILVPSRELALQIEQVFK--SMNTEFKIM 90

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK-----LILVIVDEQHR--- 405
              G  P     + ++ I      +I+GT     D ++        + L+++DE  +   
Sbjct: 91  SCYGGRPAMDEHRTMKGIC---PSVIVGTPGRMNDHLEKQNFDASTVKLLVIDEFDKCLE 147

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG---RKPIKT 460
           FG Q+ +   +++        L++AT        T L         +   G   R  +  
Sbjct: 148 FGFQEEMSDVISKLPKLRRRFLLSATDAEEIPHFTGLNRTVKLNFLDPDGGISERLHLYK 207

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           VI P+    E + +L   L   +     C         N R  V+R              
Sbjct: 208 VISPVKDKLETLYKLLCCLGN-QSTLVFC---------NHRESVDRVGKYLHSMKVYCET 257

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQ 575
            HG M   D+E  +  F+NG+C + I+T +   G+D+ D     I+N  H+ L       
Sbjct: 258 FHGGMEQDDRERALYKFRNGSCHIFISTDLAARGLDIPD-----IKNVVHYHLPVAEDGF 312

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           +H+  GR  R E   S  ++ H      SY +
Sbjct: 313 IHR-NGRTARWEADGSSYIILHSEEQLPSYIK 343


>gi|238762292|ref|ZP_04623264.1| ATP-independent RNA helicase dbpA [Yersinia kristensenii ATCC
           33638]
 gi|238699639|gb|EEP92384.1| ATP-independent RNA helicase dbpA [Yersinia kristensenii ATCC
           33638]
          Length = 460

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 159/348 (45%), Gaps = 58/348 (16%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           T  Q +A+  IL  QD+  K +         GSGKT    I +   +  G    QA+++ 
Sbjct: 28  TPVQAAALPAILNGQDVRAKAK--------TGSGKTAAFGIGLLDKIAVGEFVTQALVLC 79

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q       + ++TQN +I+   + G  P  H+   L+ + H   HI++GT   
Sbjct: 80  PTRELADQVSKELRRLARFTQNIKILT--LCGGQPMGHQ---LDSLVHA-PHIVVGTPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            Q+ ++   L+L     +++DE  R      L +        V+  T  P  +TL+ ++ 
Sbjct: 134 IQEHLRKKTLVLDDLKILVLDEADRM-----LDMGFTDAIDDVIAYTP-PQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEV--IERLKVVLSEGKKAYWICPQIEEKKES 498
               I +I+ +   R+P+    + ++  DE   IE++    +  K+   +   +   + +
Sbjct: 188 YPAGIEQISAR-VQRQPVN---VEVDDGDEAPAIEQVFFETTREKRLPLLISALSYYQPA 243

Query: 499 N---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +   F +  +   S++E   S   S+  +HG +   D++ V+  F N +C++L+AT V  
Sbjct: 244 SCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 303

Query: 553 VGIDVVDASIIIIENAEHFGLA---QLHQLR-GRVGR----GEEISSC 592
            G+D+ D  +++     +F LA   ++H  R GR GR    G  +S C
Sbjct: 304 RGLDIKDLELVV-----NFELAFDPEIHVHRIGRTGRAGMSGLAVSLC 346


>gi|42521033|ref|NP_966948.1| DEAD-box ATP dependent DNA helicase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410774|gb|AAS14882.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 408

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 159/359 (44%), Gaps = 52/359 (14%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGKTL 308
           E+G+P ++     Q + +N  F PT  Q  AI   LQ          IL     G+GKTL
Sbjct: 6   EMGLPASLR----QALDKNNLFVPTPIQIQAIPLALQGKD-------ILGSAQTGTGKTL 54

Query: 309 VALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIVEIITGNMPQAHR 364
              I + A +      G A+++ P   LA Q    I+K  +QN+ + V ++ G  P   +
Sbjct: 55  AFAIPLVAKLLNEPNTGSALVIVPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQ 114

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHR-----FGVQQRLKL 414
              L++    +  I+IGT     D I+   LI     ++++DE  R     FGVQ     
Sbjct: 115 LNQLQK----KPQIVIGTPGRIIDHIERKTLITRNVSVLVLDETDRMFDMGFGVQIEE-- 168

Query: 415 TQKATAPHVLLMTATP-IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                     +M   P I +TL+ ++    DI K+ EK   R P +  +         I+
Sbjct: 169 ----------IMKHLPKIRQTLMFSATLPGDIVKLAEKYLNR-PERISVDCEATTSVKIK 217

Query: 474 RLKVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           +  V  SE +K   +  Q+ +++ S        R   +  N LH+   S++AI HG +  
Sbjct: 218 QEIVYASESEKYEKLVTQLCQREGSIIIFVKTKRGADQLANRLHKDDYSALAI-HGDLRQ 276

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +E V++SF+ G  ++++AT V   G+D+     +I  +A       +H++ GR  R 
Sbjct: 277 HKRERVINSFRRGRNQIMVATDVASRGLDIPHIQHVINYDAPQSQADYIHRI-GRTARA 334


>gi|309792203|ref|ZP_07686675.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
 gi|308225744|gb|EFO79500.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
          Length = 523

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 146/354 (41%), Gaps = 42/354 (11%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EA 320
           ++L ++ +  PT  QE AI  +L +         I Q   G+GKT    + +   +  E 
Sbjct: 15  RVLGDLGYDEPTPIQEQAIPVMLSNSDV------IAQAQTGTGKTAAFALPIVQRLRDER 68

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             QA+I+AP   LA Q  E I KY +  +I V  + G  P   + +ALE+       +++
Sbjct: 69  VPQALILAPTRELAMQVAEAIYKYGKGRRISVAPVYGGQPIYRQLRALEQ----GVQVVV 124

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATP 430
           GT     D ++   L+L     V++DE        F       L Q        L +AT 
Sbjct: 125 GTPGRIMDHMRRGTLVLDQISTVVLDEADEMLDMGFAEDIEFILQQTPQQRQTALFSAT- 183

Query: 431 IPRT---LVLTSLGDID-ISKITEKPAGRKPIKTV--IIPINRIDEVIERLKVVLSEGKK 484
           +P     LV     D   IS   E+ A  +  +T   ++P  ++D +   L V       
Sbjct: 184 MPEAVQGLVQRYTRDAKRISIAAEQLATPRTRQTYYEVMPREKLDALCRILDV--ETPSS 241

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A   C           RS  +      +       ++HG MS   ++ VM  F+ G  +L
Sbjct: 242 AIIFC---------RTRSEADALGESLQGRGYLSEVLHGDMSQAQRDRVMKRFREGQAEL 292

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           L+AT V   G+D+ D + +I  +  +   A +H++ GR GR       I L  P
Sbjct: 293 LVATDVAARGLDIPDVTHVINYDVPNDPEAYVHRI-GRTGRAGRTGLAITLITP 345


>gi|1661174|gb|AAB41188.1| transcription repair coupling factor [Streptococcus mutans]
          Length = 97

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 53/96 (55%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY   K+  +N  + V +++
Sbjct: 1   LLVGDVGFGKTEVAMRAAFKAVNDDKQVAVLVPTTVLAQQHYNTFKERFENFPVNVAMMS 60

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
               +  + + L ++A GQ  IIIGTH L    + +
Sbjct: 61  RFKTKTEQSETLTKLAKGQVDIIIGTHRLLSKDVTF 96


>gi|237709995|ref|ZP_04540476.1| ATP-independent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|237725340|ref|ZP_04555821.1| ATP-independent RNA helicase [Bacteroides sp. D4]
 gi|265753646|ref|ZP_06089001.1| ATP-independent RNA helicase [Bacteroides sp. 3_1_33FAA]
 gi|229436027|gb|EEO46104.1| ATP-independent RNA helicase [Bacteroides dorei 5_1_36/D4]
 gi|229456088|gb|EEO61809.1| ATP-independent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|263235360|gb|EEZ20884.1| ATP-independent RNA helicase [Bacteroides sp. 3_1_33FAA]
          Length = 437

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 131/322 (40%), Gaps = 42/322 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    GSGKTL  L+ +  +++    G QA+++ P   LA Q  +  K  + NT     
Sbjct: 32  ILLSPTGSGKTLAYLLPLVQSLKPGITGVQAIVLVPSRELALQIDQVFK--SMNTPFKAV 89

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK-----LILVIVDEQHR--- 405
              G  P     + ++ +   Q  +IIGT     D +         + ++I+DE  +   
Sbjct: 90  SCYGGRPAMEEHRTIKGV---QPSVIIGTPGRMNDHLSKQNFDADTVSILIIDEFDKCLE 146

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATP---IPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           FG Q+ +   + Q        L++AT    IP+   L     ++     E+   R  +  
Sbjct: 147 FGFQEEMATVIGQLPGLQRRFLLSATDAEEIPQFTGLNKTIKLNFLNPEEQLTQRLHLYK 206

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           V+ P     E + +L   L   +     C         N R  VER     +       I
Sbjct: 207 VLSPEKDKLETLYKLLCTLG-SQSTLVFC---------NHRESVERVGKYLQSKKFQCGI 256

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQ 575
            HG M   D+E  +  F+NG+C +LI+T +   G+D+ +     IEN  H+ L       
Sbjct: 257 FHGGMEQDDRERSLYKFRNGSCHVLISTDLAARGLDIPE-----IENVVHYHLPANEDGY 311

Query: 576 LHQLRGRVGRGEEISSCILLYH 597
           +H+  GR  R E   +  ++ H
Sbjct: 312 IHR-NGRTARWEAEGNSYVILH 332


>gi|289610288|emb|CBI60286.1| unnamed protein product [Sordaria macrospora]
          Length = 97

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 2/93 (2%)

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M+  + E  M +F +    LL++TT++E G+D+  A+ +II  A+ FGLAQL+QLRGRVG
Sbjct: 1   MAPTEVEERMSAFYDKRYDLLVSTTIVESGLDIPSANTLIINRADKFGLAQLYQLRGRVG 60

Query: 585 RGEEISSCILLYHPP--LSKNSYTRLSVLKNTE 615
           R +  +   +   P   +S+ +  RL VL + E
Sbjct: 61  RSKTRAYAYMTTPPERLVSEAAERRLKVLSDLE 93


>gi|238798166|ref|ZP_04641653.1| ATP-independent RNA helicase dbpA [Yersinia mollaretii ATCC 43969]
 gi|238718020|gb|EEQ09849.1| ATP-independent RNA helicase dbpA [Yersinia mollaretii ATCC 43969]
          Length = 460

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 159/348 (45%), Gaps = 58/348 (16%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           T  Q +A+  IL  QD+  K +         GSGKT    I +   +  G    QA+++ 
Sbjct: 28  TPVQAAALPAILNGQDVRAKAK--------TGSGKTAAFGIGLLDKIAVGEFVTQALVLC 79

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q       + ++TQN +I+   + G  P  H+   L+ + H   HI++GT   
Sbjct: 80  PTRELADQVSKELRRLARFTQNIKILT--LCGGQPMGHQ---LDSLIHA-PHIVVGTPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            Q+ ++   L+L     +++DE  R      L +        V+  T  P  +TL+ ++ 
Sbjct: 134 IQEHLRKKTLVLDDLKILVLDEADRM-----LDMGFTDAINDVIAYTP-PQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEV--IERLKVVLSEGKKAYWICPQIEEKKES 498
             + I +I+ +   R+P+    + +   DE   IE++    +  K+   +   +   + +
Sbjct: 188 YPVGIEQISAR-VQREPVN---VEVEDGDEAPAIEQVFFETTREKRLPLLISVLSHYQPA 243

Query: 499 N---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +   F +  +   S++E   S   S+  +HG +   D++ V+  F N +C++L+AT V  
Sbjct: 244 SAVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 303

Query: 553 VGIDVVDASIIIIENAEHFGLA---QLHQLR-GRVGR----GEEISSC 592
            G+D+ D  +++     +F LA   ++H  R GR GR    G  +S C
Sbjct: 304 RGLDIKDLELVV-----NFELAFDPEVHVHRIGRTGRAGMSGLAVSLC 346


>gi|168699537|ref|ZP_02731814.1| ATP-dependent DNA helicase, RecQ family protein [Gemmata
           obscuriglobus UQM 2246]
          Length = 482

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 131/320 (40%), Gaps = 47/320 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            GSGK+L   +    A+E  G  V+++P+  L +   + ++       + V ++   +  
Sbjct: 49  TGSGKSLCFQLP---ALELEGTTVVVSPLIALMKDQADALRA----KGVDVAVVNSTLTA 101

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQRLK 413
           A R +A E IA G+A  +  T     +  F+  ++   + L +VDE H   ++G   R  
Sbjct: 102 AERHRAEEDIASGRAEFVYTTPEQLANPEFRAVLKRVPIDLFVVDEAHCVSQWGHDFRPD 161

Query: 414 LTQKATA------PHVLLMTATPIPRTL--VLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                 A      P VL +TAT  P  +  VL  LG I  + +      R  +   +IP 
Sbjct: 162 FLALGRAIDDLGRPPVLALTATATPDVIEDVLGRLG-IPNADVVHTGFYRPNLTLDVIPA 220

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIH 522
               E    L  +L        +           + + V+   ++ E+       +A  H
Sbjct: 221 AGDREKCALLSKILDNTDGPAIV-----------YAATVKAVEAVAEYLDGEGVDVAAYH 269

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA----QLHQ 578
           G++    + +  D+F +G  + ++AT    +GID  D   ++     H+ L       +Q
Sbjct: 270 GKLPPKQRAAAQDAFMSGAVRTMVATNAFGLGIDKPDIRAVV-----HYHLPGTVEAFYQ 324

Query: 579 LRGRVGRGEEISSCILLYHP 598
             GR GR    + C+LLY P
Sbjct: 325 EFGRAGRDGGTARCVLLYDP 344


>gi|167817317|ref|ZP_02448997.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei 91]
          Length = 269

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 16/213 (7%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +   S    + RR   + L D  
Sbjct: 46  TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-SEIAYRPRRQLLVKLRDDD 104

Query: 99  G-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
           G E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +
Sbjct: 105 GAELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQ 160

Query: 158 A---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHN 211
           A   VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+
Sbjct: 161 ALTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHH 220

Query: 212 PRKAKD----FEWTSPARERLAYDELLAGQIAL 240
           P    D     + T PA  R+ +DELLA Q++L
Sbjct: 221 PGVGADEAALIDGTHPAWTRIKFDELLAQQLSL 253


>gi|148652385|ref|YP_001279478.1| primosomal protein N' [Psychrobacter sp. PRwf-1]
 gi|148571469|gb|ABQ93528.1| replication restart DNA helicase PriA [Psychrobacter sp. PRwf-1]
          Length = 774

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 17/197 (8%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P    + Q+ A+  I+   +       +L G  GSGKT V L AM + +EAG Q +
Sbjct: 202 LAKMPLDLNEQQKLAVNAIIHTANTNTYCGYLLNGVTGSGKTEVYLQAMQSVLEAGKQVL 261

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F ++++ N    + ++  N+    R    E    G+A I+IGT +
Sbjct: 262 VLVPEIGLTPQTRARFAERFSAN----ILLLHSNLNNTQRMHGWEDCRQGRAQIVIGTRS 317

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----------APHVLLMTATPIPRT 434
                  +  L L++VDE H    +Q+  L   A              V+L TATP    
Sbjct: 318 SVLHP--FANLGLIVVDESHDQSYKQQDTLRYHAADVALYRGYQLGIPVVLGTATPSLEH 375

Query: 435 LVLTSLGDIDISKITEK 451
           L L   G +    +TE+
Sbjct: 376 LKLVQEGKLTELMLTER 392


>gi|329895752|ref|ZP_08271143.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088]
 gi|328922182|gb|EGG29538.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088]
          Length = 462

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 149/332 (44%), Gaps = 36/332 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  QE +I  IL     K R L +++   GSGKT    I +   +     G QA+++ P 
Sbjct: 28  TPVQEQSIPLIL-----KGRDL-VVRAKTGSGKTATFGIGLLNKINPRFFGAQALVLCPT 81

Query: 331 GILAQQHYEFIKKY-TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
             LA Q    I++  +Q   I V ++ G  P   +R +L+   HG AH+++GT     D 
Sbjct: 82  RELADQVGAEIRRLASQMPNIKVVMLCGGKPFGAQRDSLQ---HG-AHVVVGTPGRIHDH 137

Query: 389 ----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDI 443
               ++Q  ++  +++DE  R  +      T +A      ++   P  R TL+ ++    
Sbjct: 138 LTKGTLQIDQVSTLVLDEADRM-LDMGFADTMQA------IIAEVPKNRQTLLFSATYPD 190

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--- 500
           +I KI+        +  V   +   + VIE+L   + + ++   +    E  +  N    
Sbjct: 191 NIQKISRSIQANPAMVQVDDDVAHEEGVIEQLFFEIKKHERYPTLLALFEHYRPKNAAVF 250

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   E  + L+EH   + A+ HG M   +++ V+  F NG+C +L+AT V   G+D
Sbjct: 251 CNTKKQCAEVADFLNEHDIEAKAL-HGDMDQRERDQVLLQFANGSCPVLVATDVAARGLD 309

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +   ++++           +H++ GR GR  E
Sbjct: 310 IKSLAMVVNYELPRDPEIYVHRI-GRTGRAGE 340


>gi|70606867|ref|YP_255737.1| ATP-dependent helicase [Sulfolobus acidocaldarius DSM 639]
 gi|68567515|gb|AAY80444.1| ATP-dependent helicase [Sulfolobus acidocaldarius DSM 639]
          Length = 340

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 133/304 (43%), Gaps = 40/304 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
           PT+ Q+  I  +L   S       I+Q   GSGKT   LI +   +E+G  A+I++P   
Sbjct: 13  PTRVQQEVIPRLLGGKSV------IVQAKTGSGKTASYLIPI---LESGKTALILSPTRE 63

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD---- 388
           LA Q  + ++K  +  Q+   ++ G +    ++         QA I+IGT     D    
Sbjct: 64  LASQILDELRKLGKYKQVDFSLVIGGVKYEGQK---------QARIVIGTPGRLLDLWSK 114

Query: 389 -SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIPRTLV-LTSLGDI 443
             I + K  +VI+DE  R    G    +++    + P ++ + +  IP  +  L +    
Sbjct: 115 EEIDFSKFEVVIIDEADRMLDMGFIDDIRMILNNSKPEIVGLFSATIPEKIAELATEFSP 174

Query: 444 DISKITEKPAGRKPIKTVIIPINRI-DEVIERLKVVLSE--GKKAYWICPQIEEKKESNF 500
           D  KI       KP++ V     R  ++  +++  +L E  GK    +  +  E+     
Sbjct: 175 DAEKIVLDEY--KPVEEVQHEFIRARNDWTDKVTKLLDEINGKDKIIVFTRTRER----- 227

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
               +R + L E+      ++ G M    +      FKNG   +L+AT +   GIDVVD 
Sbjct: 228 ---AKRLHYLLENKGIRNGLLSGDMPQSVRMKNFYGFKNGKYNILVATDLASRGIDVVDV 284

Query: 561 SIII 564
           +III
Sbjct: 285 NIII 288


>gi|60115443|dbj|BAD90012.1| DEAD box RNA helicase [Tubifex tubifex]
          Length = 396

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 149/340 (43%), Gaps = 59/340 (17%)

Query: 302 VGSGKTLVALIA-----MAAAVEAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+      +   VE G        QA+I+ P   L  Q Y   +K+  NT 
Sbjct: 6   TGSGKTAAFLLPVLTGMLRNGVEGGQFSVVQEPQAIIVGPTRELVTQIYNEARKFAHNTM 65

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV-----IVDEQH 404
           +   ++ G +   ++ + + +     AH+++GT     D I+   L L      I+DE  
Sbjct: 66  VRPVVVYGGVTTGYQAREVSK----GAHLVVGTAGRLLDFIRKGYLSLAKVKYFILDEAD 121

Query: 405 RF----------GVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEK 451
           R            +   L +  K T    L+ +AT  P   + L    L D     +   
Sbjct: 122 RMLDMGFLPNMMALANELGMPAK-TERQTLMFSAT-FPEEVQQLAKELLNDYIFVTVGRV 179

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                 I+  ++ +++ ++  + + ++ S+G++   +   +E+K++++F   +  + S  
Sbjct: 180 GGANTDIEQHVLQVDQFNKREKLVSILNSQGQQRTLVF--VEQKRQADF---IASYLSQS 234

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E  T+SI   HG     ++E  +  FKNGT  +L+AT+V   G+D+   + +I     +F
Sbjct: 235 EFPTTSI---HGDREQREREEALRDFKNGTAPILVATSVAARGLDIPGVNHVI-----NF 286

Query: 572 GLAQ-----LHQLRGRVGRGEEISSCILLYHP----PLSK 602
            + Q     +H++ GR GR   +      ++P    PL++
Sbjct: 287 DMPQSIDEYVHRI-GRTGRCGNLGRATSFFNPSSDQPLAR 325


>gi|116494326|ref|YP_806060.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
 gi|116104476|gb|ABJ69618.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
          Length = 448

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 155/371 (41%), Gaps = 37/371 (9%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M  QFK+    P  ++G  A  I      +PT  Q+  I  +L+  +       + Q   
Sbjct: 1   MENQFKQFQLKPFVIDGLNAMAIT-----APTPIQQKVIPALLRGENI------VGQSQT 49

Query: 303 GSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-VEIITGN 358
           GSGKT   LV L++M    E   Q VI AP   LA Q Y   ++  Q   +I +  + G 
Sbjct: 50  GSGKTHAFLVPLLSMVDPTEDATQVVITAPSRELANQIYAVAQQLIQTEPVIRINRLVGG 109

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           M    ++K ++++ + Q H+ IGT     D I+ Y L+   V    R  V     +T   
Sbjct: 110 M---DKQKQIDKLQNHQPHVAIGTPGRILDMIKSYDLVPSSV----RHFVVDEADMTLDM 162

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIER 474
                +   A+  P  L +         K+  +P  RK    P    + P + I + +E 
Sbjct: 163 GFLETVDAIASSFPDHLQMAVFSATIPQKL--EPFLRKYMDNPTTIELKPQSVIADTVEN 220

Query: 475 LKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           + ++ ++G+    +  Q+            +N ++ V+  +   +H    +A IHG +  
Sbjct: 221 I-LIAAKGRDKNELIYQLVTMGHPFLVLIFANTKTSVDAIHDFLKHQGLKVAKIHGGIQP 279

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            ++  VM    +   + ++AT +   GID+   S++I           +H++ GR GR  
Sbjct: 280 RERRRVMKDVADLKYQYVVATDLAARGIDIKGVSMVINAEIPRDNEFFIHRV-GRTGRNG 338

Query: 588 EISSCILLYHP 598
              + + LY P
Sbjct: 339 MAGTAVTLYEP 349


>gi|39939200|ref|NP_950966.1| superfamily II DNA/RNA helicase [Onion yellows phytoplasma OY-M]
 gi|39722309|dbj|BAD04799.1| superfamily II DNA and RNA helicase [Onion yellows phytoplasma
           OY-M]
          Length = 552

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 135/311 (43%), Gaps = 39/311 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   G+GKT    I +   +E      Q++I+ P   L  Q YE +KK  +  Q I +
Sbjct: 44  IGQAQTGTGKTFAFGIPIIEKIEPKIQKTQSLILCPTRELTLQVYEELKKLLRFYQEIRI 103

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQH 404
            ++ G      + +ALE     + H+II T     D ++  K        L L   DE  
Sbjct: 104 AVVYGGESYTKQFRALE----AKPHLIIATPGRAIDHLERGKIDLSALKILTLDEADEML 159

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + G Q+ L+  L +       +L +AT  P            I KI  K   +K  K + 
Sbjct: 160 KMGFQEALETILKKIPEERQTVLFSATLPPF-----------IKKIASK--YQKDTKILQ 206

Query: 463 IPINRID-EVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFT 515
           +P+  I    IE+   ++ E  KA  +   ++ KK+      +N +  V+   +  +   
Sbjct: 207 VPVKNIAVNAIEQNYFLVKEVDKAKLLVRLLDLKKDYSAILFANTKKDVDEITAYLQDKG 266

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
                +HG +    ++ VM++F+ G  K+LIAT V   G+D+ D  ++I  +  H     
Sbjct: 267 FLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAARGLDISDIKMVINYDLPHEDEVY 326

Query: 576 LHQLRGRVGRG 586
           +H++ GR GR 
Sbjct: 327 VHRI-GRTGRA 336


>gi|165976457|ref|YP_001652050.1| primosome assembly protein PriA [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876558|gb|ABY69606.1| primosomal protein N' [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 746

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 172/422 (40%), Gaps = 105/422 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++ G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 232 LLNGVTGSGKTEVYLQVIEEVLKRGEQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 287

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
             NM +  R  A  R+ +G++ I+IGT  ALF    Q+ KL L+I+DE+H          
Sbjct: 288 HSNMNETERLNAWLRVKNGESAIVIGTRSALFS---QFEKLGLIIIDEEHDSSFKQQDGW 344

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           R+  +    L  K     ++L +ATP   ++     G      +T +    +  K  +I 
Sbjct: 345 RYHARDLAILRAKNLHIPIILGSATPSLESVQNVQNGKFIELSLTARAGNAQQAKQQLID 404

Query: 465 I--NRI-----DEVIERLKVVLSEGKKAY------------------WIC-------PQI 492
           +   RI     D ++  +K  L +G +                    W+C       P  
Sbjct: 405 LKTQRITAGLSDRLLAMMKRHLEQGNQVVLFLNRRGFAPVLLCHECGWMCECDACEKPYT 464

Query: 493 EEKKESNFRS-------VVERFNSLHEHFTSSIAIIHG-----------------RMSDI 528
             +K+   R        V+ R      H  S+  I  G                 ++S I
Sbjct: 465 YHQKQKILRCHHCASQRVIPRQCG---HCGSTNLITTGVGTEQLEQVLSEQFPTYQISRI 521

Query: 529 DKESV---------MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH--FG----- 572
           D++S          ++  + G  ++LI T ++  G    + +++ I N +   F      
Sbjct: 522 DRDSTARKGALENHLNDIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTDFRA 581

Query: 573 ---LAQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL-IAEEDLKQ 627
              LAQL+ Q+ GR GR E+    +L  H P     +  L  L   E G+L  A+E LK 
Sbjct: 582 EERLAQLYVQVAGRAGRAEKQGEVVLQTHYP----EHPLLKTL--LEQGYLAFAQEALKM 635

Query: 628 RK 629
           RK
Sbjct: 636 RK 637


>gi|167912446|ref|ZP_02499537.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei 112]
          Length = 295

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 16/213 (7%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +   S    + RR   + L D  
Sbjct: 66  TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-SEIAYRPRRQLLVKLRDDD 124

Query: 99  G-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
           G E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +
Sbjct: 125 GAELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQ 180

Query: 158 A---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHN 211
           A   VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+
Sbjct: 181 ALTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHH 240

Query: 212 PRKAKD----FEWTSPARERLAYDELLAGQIAL 240
           P    D     + T PA  R+ +DELLA Q++L
Sbjct: 241 PGVGADEAALIDGTHPAWTRIKFDELLAQQLSL 273


>gi|167740106|ref|ZP_02412880.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 14]
          Length = 323

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 14/212 (6%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 64  TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 123

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +A
Sbjct: 124 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 179

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+P
Sbjct: 180 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 239

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIAL 240
               D     + T PA  R+ +DELLA Q++L
Sbjct: 240 GVGADETALIDGTHPAWTRIKFDELLAQQLSL 271


>gi|328543973|ref|YP_004304082.1| DEAD/DEAH box helicase [polymorphum gilvum SL003B-26A1]
 gi|326413717|gb|ADZ70780.1| DEAD/DEAH box helicase domain protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 486

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 144/337 (42%), Gaps = 46/337 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI  +L+    +  +L I Q   G+GKT    + M   +E G       + +I
Sbjct: 24  PTAIQAGAIPQVLE----RRDVLGIAQ--TGTGKTASFTLPMLTLLEKGRARARMPRTLI 77

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  +KY  N ++ V ++ G +  A + + ++R     A ++I T    
Sbjct: 78  LEPTRELAAQVEENFEKYGVNHKLNVALLIGGVSFADQDRKIDR----GADVLIATPGRL 133

Query: 387 QDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRT 434
            D ++  KL+L     +++DE  R         +++  KL         L  +AT  P  
Sbjct: 134 LDHVERGKLMLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTR--QTLFFSATMPPEI 191

Query: 435 LVLTSLGDIDISKITEKP--AGRKPIKTVIIPINRID-EVIERLKVVLSEG---KKAYWI 488
             LT     + +KI   P  +  + +   I+    +D E   +L+ +L E    K A   
Sbjct: 192 QRLTETFLQNPAKIEVAPRSSTAENVTQYIVAAGSVDFEKRAKLRELLGEAEDLKNAIVF 251

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C        +  R V   F SL  H   ++  +HG M    +   ++SF+ GT  LL+A+
Sbjct: 252 C--------NRKRDVTTLFRSLERH-GFNVGCLHGDMDQRTRMQTLESFRKGTLTLLVAS 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            V   G+D+ D S +   +        +H++ GR GR
Sbjct: 303 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGR 338


>gi|92081444|dbj|BAE93269.1| RNA helicase [Tubifex tubifex]
          Length = 402

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 149/340 (43%), Gaps = 59/340 (17%)

Query: 302 VGSGKTLVALIA-----MAAAVEAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+      +   VE G        QA+I+ P   L  Q Y   +K+  NT 
Sbjct: 12  TGSGKTAAFLLPVLTGMLRNGVEGGQFSVVQEPQAIIVGPTRELVTQIYNEARKFAHNTM 71

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV-----IVDEQH 404
           +   ++ G +   ++ + + +     AH+++GT     D I+   L L      I+DE  
Sbjct: 72  VRPVVVYGGVTTGYQAREVSK----GAHLVVGTAGRLLDFIRKGYLSLAKVKYFILDEAD 127

Query: 405 RF----------GVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEK 451
           R            +   L +  K T    L+ +AT  P   + L    L D     +   
Sbjct: 128 RMLDMGFLPNMMALANELGMPAK-TERQTLMFSAT-FPEEVQQLAKELLNDYIFVTVGRV 185

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                 I+  ++ +++ ++  + + ++ S+G++   +   +E+K++++F   +  + S  
Sbjct: 186 GGANTDIEQHVLQVDQFNKREKLVSILNSQGQQRTLVF--VEQKRQADF---IASYLSQS 240

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E  T+SI   HG     ++E  +  FKNGT  +L+AT+V   G+D+   + +I     +F
Sbjct: 241 EFPTTSI---HGDREQREREEALRDFKNGTAPILVATSVAARGLDIPGVNHVI-----NF 292

Query: 572 GLAQ-----LHQLRGRVGRGEEISSCILLYHP----PLSK 602
            + Q     +H++ GR GR   +      ++P    PL++
Sbjct: 293 DMPQSIDEYVHRI-GRTGRCGNLGRATSFFNPSSDQPLAR 331


>gi|167847213|ref|ZP_02472721.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei B7210]
          Length = 244

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 14/212 (6%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 13  TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 72

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +A
Sbjct: 73  AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 128

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+P
Sbjct: 129 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 188

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIAL 240
               D     + T PA  R+ +DELLA Q++L
Sbjct: 189 GVGADETALIDGTHPAWTRIKFDELLAQQLSL 220


>gi|238749573|ref|ZP_04611078.1| ATP-independent RNA helicase dbpA [Yersinia rohdei ATCC 43380]
 gi|238712228|gb|EEQ04441.1| ATP-independent RNA helicase dbpA [Yersinia rohdei ATCC 43380]
          Length = 504

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 78/358 (21%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           T  Q +A+  IL  QD+  K +         GSGKT    I +   +  G    QA+++ 
Sbjct: 72  TPVQAAALPAILNGQDVRAKAK--------TGSGKTAAFGIGVLDKIAVGEFVTQALVLC 123

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q       + ++TQN +I+   + G  P  H+   L+ + H   HI++GT   
Sbjct: 124 PTRELADQVSKELRRLARFTQNIKILT--LCGGQPMGHQ---LDSLVHA-PHIVVGTPGR 177

Query: 386 FQDSIQYYKLIL-----VIVDEQHR---------------FGVQQRLKLTQKATAPHVLL 425
            Q+ ++   LIL     +++DE  R               +   QR  L   AT P  + 
Sbjct: 178 IQEHLRKKTLILDDLKILVLDEADRMLDMGFADAIDDVISYTPPQRQTLLFSATYPQGIE 237

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
             +  + R  V   + D D     E PA    I+ V     R     +RL +++S     
Sbjct: 238 QISARVQRQPVNVEVDDGD-----EAPA----IEQVFFETTRE----KRLPLLIS----- 279

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTC 542
             +    + +    F +  +   +++E   S   S+  +HG +   D++ V+  F N +C
Sbjct: 280 --VLSHYQPESCVVFCNTKKDCQNVYEALESRGISVLALHGDLEQRDRDQVLVRFSNRSC 337

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLA---QLHQLR-GRVGR----GEEISSC 592
           ++L+AT V   G+D+ D ++++     +F LA   ++H  R GR GR    G  +S C
Sbjct: 338 RVLVATDVAARGLDIKDLALVV-----NFELAFDPEIHVHRIGRTGRAGMSGLAVSLC 390


>gi|167837800|ref|ZP_02464683.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis MSMB43]
          Length = 272

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 14/212 (6%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+    I    G +  +      +R+    L +D  
Sbjct: 46  TRDIDLVLHLPMRYEDETTLTPMRELLPGEIAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 105

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       ++ +   G+++ V G ++     + +VHP        D + PL +A
Sbjct: 106 AELVLRFLNFYGSQVRQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KVVDEDAPLPQA 161

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  + +  LQ    P +A+A  ++H+P
Sbjct: 162 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEVARTYLQPLDVPPLADAVRLLHHP 221

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIAL 240
               D     + T PA  R+ +DELLA Q++L
Sbjct: 222 GAGADEAALIDGTHPAWTRIKFDELLAQQLSL 253


>gi|284047862|ref|YP_003398201.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952083|gb|ADB46886.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 417

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 162/367 (44%), Gaps = 54/367 (14%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + V+  + +K+ R     PT  QE AI  +L      N    I +   G GKTL  +I +
Sbjct: 8   LKVDETMVEKLHRTGKDIPTPVQERAIPALL------NGRDVIARAQTGVGKTLSFVIPL 61

Query: 315 AAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP-QAHRRKALER 370
              V+      QA+I++P   LAQQ    I+K   +T I    ++G    +  +RK    
Sbjct: 62  FDKVDPQKEFVQALILSPTRELAQQTAGEIRKLEGDTGIRTLTVSGGRDFEEEKRK---- 117

Query: 371 IAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPH 422
           I H +A +++GT     D ++           L+L  VDE  R G  + ++         
Sbjct: 118 IGH-RAQVLVGTPGRLLDHLRKGNTSLGGVKYLVLDEVDEMLRQGFGEDIET-------- 168

Query: 423 VLLMTATPIP-RTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKV 477
             L++  P P +T++ ++  D ++ K+     GR+    P+   I P       I ++ +
Sbjct: 169 --LLSLMPQPHQTMMCSATLDEEVRKL-----GRQLTTNPLVIDIAPKESTASTIHQICI 221

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS---SIAIIHGRMSDID 529
            +SE  KA  +   I  ++ + F  +V     ER   L +       ++ ++HG MS   
Sbjct: 222 KVSEDHKADALASLI--RRYNPFLMLVFCCSKERAIELSDWLYGEGFNVDVLHGDMSQTK 279

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +  VM++F+    ++L+A+ +   G+DV   + ++  +  H     +H++ GR GR    
Sbjct: 280 RRQVMENFRKAKLQILVASDIAARGLDVEGITQVVNYDIPHDPDWYVHRI-GRTGRAGSE 338

Query: 590 SSCILLY 596
            + I  Y
Sbjct: 339 GTAITFY 345


>gi|303253665|ref|ZP_07339803.1| primosome assembly protein PriA [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248076|ref|ZP_07530105.1| Primosomal protein N' [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302647585|gb|EFL77803.1| primosome assembly protein PriA [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855474|gb|EFM87648.1| Primosomal protein N' [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 732

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 172/422 (40%), Gaps = 105/422 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++ G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 218 LLNGVTGSGKTEVYLQVIEEVLKRGEQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 273

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
             NM +  R  A  R+ +G++ I+IGT  ALF    Q+ KL L+I+DE+H          
Sbjct: 274 HSNMNETERLNAWLRVKNGESAIVIGTRSALFS---QFEKLGLIIIDEEHDSSFKQQDGW 330

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           R+  +    L  K     ++L +ATP   ++     G      +T +    +  K  +I 
Sbjct: 331 RYHARDLAILRAKNLHIPIILGSATPSLESVQNVQNGKFIELSLTARAGNAQQAKQQLID 390

Query: 465 I--NRI-----DEVIERLKVVLSEGKKAY------------------WIC-------PQI 492
           +   RI     D ++  +K  L +G +                    W+C       P  
Sbjct: 391 LKTQRITAGLSDRLLAMMKRHLEQGNQVVLFLNRRGFAPVLLCHECGWMCECDACEKPYT 450

Query: 493 EEKKESNFRS-------VVERFNSLHEHFTSSIAIIHG-----------------RMSDI 528
             +K+   R        V+ R      H  S+  I  G                 ++S I
Sbjct: 451 YHQKQKILRCHHCASQRVIPRQCG---HCGSTNLITTGVGTEQLEQVLSEQFPTYQISRI 507

Query: 529 DKESV---------MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH--FG----- 572
           D++S          ++  + G  ++LI T ++  G    + +++ I N +   F      
Sbjct: 508 DRDSTARKGALENHLNDIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTDFRA 567

Query: 573 ---LAQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL-IAEEDLKQ 627
              LAQL+ Q+ GR GR E+    +L  H P     +  L  L   E G+L  A+E LK 
Sbjct: 568 EERLAQLYVQVAGRAGRAEKQGEVVLQTHYP----EHPLLKTL--LEQGYLAFAQEALKM 621

Query: 628 RK 629
           RK
Sbjct: 622 RK 623


>gi|167895799|ref|ZP_02483201.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 7894]
          Length = 282

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 16/213 (7%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +   S    + RR   + L D  
Sbjct: 64  TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-SEIAYRPRRQLLVKLRDDD 122

Query: 99  G-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
           G E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +
Sbjct: 123 GAELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQ 178

Query: 158 A---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHN 211
           A   VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+
Sbjct: 179 ALTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHH 238

Query: 212 PRKAKD----FEWTSPARERLAYDELLAGQIAL 240
           P    D     + T PA  R+ +DELLA Q++L
Sbjct: 239 PGVGADETALIDGTHPAWTRIKFDELLAQQLSL 271


>gi|123469039|ref|XP_001317734.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121900475|gb|EAY05511.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 505

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 140/321 (43%), Gaps = 35/321 (10%)

Query: 297 ILQGDVGSGKTLVALI-----AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
           I+    G+GKTL  LI      +A   + G  A+I++P  +LA+Q      +  ++T I 
Sbjct: 157 IVVSPTGTGKTLCFLIPLLYHVLAQGKQEGPTALILSPTELLARQTTLVCHQLIKSTDIK 216

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL---FQDSIQYYKLILVIVDEQHRF-- 406
              +TGN  +  ++ +L +     A +IIGT      F  ++ +     V+VDE  R   
Sbjct: 217 CVELTGNQMKHKQQSSLMK----GADVIIGTPGRLMNFLKTVNWQFCTYVVVDEADRIFE 272

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPR--TLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G  ++L+       P    LL  AT  P+   L + SL      +I +  A +  I+  
Sbjct: 273 TGFLRQLRSIMDYIRPDRQTLLFGATLPPQIEELSMNSLKFSTRVQIGKTGAPQSNIEHN 332

Query: 462 II----PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            +    P  + + + E L + L +G    ++       K+ NF    +    + +  T+ 
Sbjct: 333 FVIFDDPAKKREWIKENL-LKLPDGLVLLFV-------KDKNF---CDTLYGILKKITNL 381

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I ++HG M    + +  + F+ G C+ LIAT +   G+D+ + + ++  +      + +H
Sbjct: 382 ITLVHGNMDANQRTAAFNKFRKGECRFLIATEIAARGVDIENINCVVNVDIPEQPESYIH 441

Query: 578 QLRGRVGRGEEISSCILLYHP 598
           ++ GR  R     +   L  P
Sbjct: 442 RV-GRTARAGRSGTAFTLLTP 461


>gi|242278297|ref|YP_002990426.1| DEAD/DEAH box helicase [Desulfovibrio salexigens DSM 2638]
 gi|242121191|gb|ACS78887.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 521

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 147/353 (41%), Gaps = 55/353 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +PT  QE  I  +L    +K+    + Q   G+GKT    + +   V  G    QA+++ 
Sbjct: 24  APTPIQEKTIPMLLS--GEKDI---VGQAQTGTGKTAAFGLPIIENVREGAGHVQAIVLT 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I  +  + ++ V  + G  P   + KAL+R     A I++GT     D
Sbjct: 79  PTRELAMQVADEIISFRGSRKVFVATVYGGQPMLPQLKALKR----GADIVVGTPGRVLD 134

Query: 389 SI--------QYYKLILVIVDEQHRFG-VQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
            I        Q    +L   DE    G +++  ++ + A      L+ +  +PR ++  +
Sbjct: 135 HIRRKTLDLSQINNFVLDEADEMCNMGFLEEVSEIMENAGEDRRTLLFSATMPREVMNIA 194

Query: 440 ---LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              +GD D+  + ++     P+  +I       EV ER         +   +C  ++ + 
Sbjct: 195 KKFMGDYDVVSV-KREKDEAPLTELIF-----HEVNER--------DRFEALCRVVDAQP 240

Query: 497 E------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E         R+  +R              IHG +S   +E ++  F+   CK+L+AT V
Sbjct: 241 EFYGLVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKILVATDV 300

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVGRGEEISSCILLYHP 598
              GIDV D S ++     +F L Q     +H++ GR GR  +    + L  P
Sbjct: 301 AARGIDVPDLSHVV-----NFALPQDPQSFVHRV-GRTGRAGKKGVAVTLITP 347


>gi|167825727|ref|ZP_02457198.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 9]
          Length = 240

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 14/212 (6%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 13  TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 72

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +A
Sbjct: 73  AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 128

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+P
Sbjct: 129 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 188

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIAL 240
               D     + T PA  R+ +DELLA Q++L
Sbjct: 189 GVGADETALIDGTHPAWTRIKFDELLAQQLSL 220


>gi|149197290|ref|ZP_01874342.1| primosome assembly protein PriA [Lentisphaera araneosa HTCC2155]
 gi|149139836|gb|EDM28237.1| primosome assembly protein PriA [Lentisphaera araneosa HTCC2155]
          Length = 735

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 25/214 (11%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++++ + P   T  Q  A K I  +M ++     +L G  GSGKT V L A+A A+  G 
Sbjct: 190 EEVIISKPLELTDEQTDAFKLITNEMDEEKPATVVLYGITGSGKTEVYLQAIAEALSRGK 249

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+++ P I +  Q  + F  ++ +     V ++   + +  R    + I+ G+  I++G
Sbjct: 250 QAIVLVPEISLTPQTVHRFRSRFGKQ----VSVLHSGLSEGERYDQWKLISRGETQIVVG 305

Query: 382 TH-ALFQDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP 430
              ALF     ++   +++VDE+H          R+  +    +        V+L +ATP
Sbjct: 306 ARSALF---APFHNPGIIVVDEEHEPSYKQDSHPRYNARDIAVMRGIMDKCPVVLGSATP 362

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
              T+   + G   ++K+T++P+      T ++P
Sbjct: 363 SFETMNNANQGKYKMAKLTQRPS------TAVVP 390


>gi|301065837|ref|YP_003787860.1| superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
 gi|300438244|gb|ADK18010.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
          Length = 448

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 154/371 (41%), Gaps = 37/371 (9%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M  QFK+    P  ++G  A  I      +PT  Q+  I  +L+  +       + Q   
Sbjct: 1   MENQFKQFQLKPFVIDGLNAMAIT-----APTPIQQKVIPALLRGENI------VGQSQT 49

Query: 303 GSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-VEIITGN 358
           GSGKT   LV L++M    E   Q VI AP   LA Q Y   ++  Q    I +  + G 
Sbjct: 50  GSGKTHAFLVPLLSMVDPTEDATQVVITAPSRELANQIYAVAQQLIQTEPAIRINRLVGG 109

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           M    ++K ++++ + Q H+ IGT     D I+ Y L+   V    R  V     +T   
Sbjct: 110 M---DKQKQIDKLQNHQPHVAIGTPGRILDMIKSYDLVPSSV----RHFVVDEADMTLDM 162

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIER 474
                +   A+  P  L +         K+  +P  RK    P    + P + I + +E 
Sbjct: 163 GFLETVDAIASSFPDHLQMAVFSATIPQKL--EPFLRKYMDNPTTIELKPQSVIADTVEN 220

Query: 475 LKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           + ++ S+G+    +  Q+            +N ++ V+  +   +H    +A IHG +  
Sbjct: 221 I-LIASKGRDKNELIYQLVTMGHPFLVLIFANTKTSVDAIHDFLKHQGLKVAKIHGGIQP 279

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            ++  VM    +   + ++AT +   GID+   S++I           +H++ GR GR  
Sbjct: 280 RERRRVMKDVADLKYQYVVATDLAARGIDIKGVSMVINAEIPRDNEFFIHRV-GRTGRNG 338

Query: 588 EISSCILLYHP 598
              + + LY P
Sbjct: 339 MAGTAVTLYEP 349


>gi|298241052|ref|ZP_06964859.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297554106|gb|EFH87970.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 562

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 143/333 (42%), Gaps = 39/333 (11%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   GSGKTL   + LI   A  +   QA+++ P   LA Q    +  +    ++   
Sbjct: 43  IGQSATGSGKTLAYAIPLIERLAKNKRVAQALVLVPTRELAVQVNSVLSTFAAPRRLTTA 102

Query: 354 IITGNMPQAHRR--KALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF 406
           ++ G      RR  K +  + +G A IIIGT    +D ++   L+L      ++DE    
Sbjct: 103 LLVGG-----RRYEKQISALRYG-AQIIIGTPGRIKDHLEQGNLVLRDIRICVLDEAD-- 154

Query: 407 GVQQRLKLTQKATAPHV-LLMTATPIPRTLVL-TSLGDIDISKITEKPAGRKPIKTVIIP 464
                 ++      P +  ++  +P  R + L ++     I+K+ EK   + P+K  I P
Sbjct: 155 ------QMLDSGFGPEIEQILETSPEDRQMALFSATMPTWIAKLQEKYL-KDPVKVTITP 207

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSI 518
              +   IE++   +  GKK   +C  +   +          +  VER      +   ++
Sbjct: 208 EAGVQSTIEQIVYQVPRGKKVEALCTLLASTQGDISLIFGRTKMGVERLGEQLSNLGFAV 267

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              HG  S   +E V+ +F+ G  ++L+AT V   G+D+   + +I  N E     +L  
Sbjct: 268 GTFHGDKSQRAREDVLMAFRRGQVQMLLATDVAARGLDIRGITQVI--NYELPDSDELFT 325

Query: 579 LR-GRVGR-GEEISSCILLYHPPLSKNSYTRLS 609
            R GR GR G    +  LL    +SK  + R+S
Sbjct: 326 HRIGRTGRMGRYGKAVTLLVPSDMSK--WRRMS 356


>gi|149196871|ref|ZP_01873924.1| Probable ATP dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
 gi|149139981|gb|EDM28381.1| Probable ATP dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
          Length = 537

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 152/351 (43%), Gaps = 53/351 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  QE AI  +L   SQ + +  I Q   G+GKT    + +   +E G    QA+I+ P
Sbjct: 25  PSPIQEQAIPVLL---SQDHDI--IGQAQTGTGKTAAFGLPIVQKIEPGLKKPQALILCP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHGQAHIIIGTH 383
              LA Q  E IK + +   I    + G  P   +++AL++         G+    I   
Sbjct: 80  TRELAIQVNEEIKSFCKGRGITTVTLYGGAPIMDQKRALKKGVDLVVATPGRCIHFIEDG 139

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTSLG 441
            L  DS++Y  L+L   DE    G  + ++   KA+     VL+ +AT  PR        
Sbjct: 140 KLELDSLEY--LVLDEADEMLNMGFVEDVEKVLKASPDDRTVLMFSATMPPR-------- 189

Query: 442 DIDISKITEKPAGRK---PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
              + KI E           K+  + +  ID+V+        E K A  +C  ++ +K+ 
Sbjct: 190 ---LKKIAESYMHNSITIKAKSETMTMETIDQVVYE---AYPENKFA-ALCRIMDLEKDF 242

Query: 498 -----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  VE+ ++   +   +   IHG ++   +E ++  F+N    LLIAT V  
Sbjct: 243 YGIIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFRNRNISLLIATDVAA 302

Query: 553 VGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVGRGEEISSCILLYHP 598
            GIDV D S I+     +F L +     +H++ GR GR  +  + I L  P
Sbjct: 303 RGIDVTDLSHIV-----NFSLPEQFESYVHRI-GRTGRAGKTGTAITLITP 347


>gi|319407348|emb|CBI80993.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C]
          Length = 501

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 141/340 (41%), Gaps = 47/340 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q   I  ILQ    K  +L I Q   G+GKT   ++ M   +E G       + +I
Sbjct: 61  PTPIQSRTIPYILQ----KKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARIPRTLI 114

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   KY  N  + V ++ G +   H+ + LER     A ++I T    
Sbjct: 115 LEPTRELAAQVKENFDKYGVNHNLNVALLIGGVSFEHQDRKLER----GADVLIATPGRL 170

Query: 387 QDSIQYYKLILV-----IVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRT 434
            D  +  KL+LV     ++DE  R         V++  K+T        L  +AT  P  
Sbjct: 171 LDHFERGKLLLVGVEILVIDEADRMLNMGFIPDVERICKVT--PFTRQTLFFSATMAPEI 228

Query: 435 LVLTS-------LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             LT          +I  +  T K   ++ +K+   P ++   + E ++    E K A  
Sbjct: 229 TQLTKQFLHSPVYIEITEASSTAKTITQRLVKSESKPCDKKAVLKELIQNEGDELKNAII 288

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C        +  + + E F  L +H   S+  +HG M    + + + SFKN    LLIA
Sbjct: 289 FC--------NRKKDISELFQYLIKH-NFSVGTLHGDMDQHSRTNTLASFKNNKFILLIA 339

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
           + V   G+D+   S +   +        +H++ GR GR +
Sbjct: 340 SDVAARGLDIPAVSHVFNYDVPTHAEDYIHRI-GRTGRAK 378


>gi|328955205|ref|YP_004372538.1| exonuclease RecJ [Coriobacterium glomerans PW2]
 gi|328455529|gb|AEB06723.1| exonuclease RecJ [Coriobacterium glomerans PW2]
          Length = 1107

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 146/345 (42%), Gaps = 53/345 (15%)

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-AMAAAVEAGGQAVIMAPI-GILAQQH 337
           A ++ L  +SQ    L I+    G GK+LV  + A+  A+  G  +V++ P+  ++A Q 
Sbjct: 635 AQREALDALSQAQSCLAIMG--TGRGKSLVFQVHAVREALRRGRASVLVYPLRALVADQA 692

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY---- 393
           +  +    ++  + V ++TG    + R  A + +A G   I++ T   F    + +    
Sbjct: 693 FHLVGA-CESFGLTVGVLTGETDSSARESAFDALASGGLDIVLTTPEFFTIHAERFAASG 751

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           ++  V++DE H  G+ +  + +     P  L     P    L  T+  D D+S       
Sbjct: 752 RIGFVVIDEAHHAGLAKSGQRSAYLDMPRALDQMDAPT--VLATTATADADVSSEI---- 805

Query: 454 GRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                   ++ I R+  DE + R  + L +G+     C      +E    S+V R     
Sbjct: 806 ------CSLLHIERVVVDESV-RANLRLEDGRD--LAC------REDRLVSIVARGEKCV 850

Query: 512 EHFTS--------------------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +  S                    +IA  +  +S +D+  V D+F+ GT   +++T+  
Sbjct: 851 VYVNSRDRSVALTRMLRKRVPDIAVAIAYYNAGLSRLDRCRVEDAFREGTLVCIVSTSAF 910

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             G+++ D   +++ +   F   + +Q+ GR GR  E +   LLY
Sbjct: 911 GEGVNLPDIRHVVLYHMP-FSAVEFNQMSGRAGRDGETACIHLLY 954


>gi|254882074|ref|ZP_05254784.1| ATP-independent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|319640918|ref|ZP_07995627.1| ATP-independent RNA helicase [Bacteroides sp. 3_1_40A]
 gi|254834867|gb|EET15176.1| ATP-independent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|317387437|gb|EFV68307.1| ATP-independent RNA helicase [Bacteroides sp. 3_1_40A]
          Length = 439

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 130/322 (40%), Gaps = 42/322 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    GSGKTL  L+ +  +++    G QA+++ P   LA Q  +  K  + NT     
Sbjct: 34  ILLSPTGSGKTLAYLLPLVQSLKPGITGVQAIVLVPSRELALQIDQVFK--SMNTPFKAV 91

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK-----LILVIVDEQHR--- 405
              G  P     + ++ +   Q  +IIGT     D +         +  +++DE  +   
Sbjct: 92  SCYGGRPAMEEHRTIKGV---QPSVIIGTPGRMNDHLSKQNFDADTVTTLVIDEFDKCLE 148

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATP---IPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           FG Q+ +   + Q        L++AT    IP+   L     ++     E+   R  +  
Sbjct: 149 FGFQEEMATVIGQLPNLQRRFLLSATDAEEIPQFTGLDKTIKLNFLNPEEQLTHRLHLYK 208

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           V+ P     E + +L   L   +     C         N R  VER     +       I
Sbjct: 209 VLSPEKDKLETLYKLLCTLG-SQSTLVFC---------NHRESVERVGKYLQSQKFQCGI 258

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQ 575
            HG M   D+E  +  F+NG+C +LI+T +   G+D+ +     IEN  H+ L       
Sbjct: 259 FHGGMEQDDRERSLYKFRNGSCHVLISTDLAARGLDIPE-----IENVVHYHLPANEDGY 313

Query: 576 LHQLRGRVGRGEEISSCILLYH 597
           +H+  GR  R E   +  ++ H
Sbjct: 314 IHR-NGRTARWEAEGNSYVILH 334


>gi|153871201|ref|ZP_02000433.1| ATP-dependent RNA helicase DbpA [Beggiatoa sp. PS]
 gi|152072333|gb|EDN69567.1| ATP-dependent RNA helicase DbpA [Beggiatoa sp. PS]
          Length = 466

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 142/319 (44%), Gaps = 35/319 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKK---YTQNTQI 350
           I Q   GSGKT    I + + + A     QA+++ P   LA+Q  + I++   +TQN ++
Sbjct: 49  IAQAKTGSGKTAAFGIGLLSKLNAKNYQVQALVLCPTRELAEQVGQEIRRLARFTQNVKL 108

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +   + G  P A +R +L   AHG AHII+GT    QD ++   L L     +++DE  R
Sbjct: 109 LS--LCGGKPIAPQRDSL---AHG-AHIIVGTPGRIQDHLRKGSLNLKNAHTLVLDEADR 162

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                   L        + +++  P  R  +L S    D          ++P+   +  +
Sbjct: 163 M-------LDMGFYDDMMDIISYLPKKRQTLLFSATFPDSIVQMSHAIQKQPVNIQVESL 215

Query: 466 NRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNF------RSVVERFNSLHEHFTSSI 518
           +   E+ +R  +V   + +K   +      + ES            E    L ++   +I
Sbjct: 216 HSYSEIEQRFYQVKQPQHRKEAVMTLLAHYQPESTVIFCNTKLQCQEIATQLKKNGYYAI 275

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A IHG +   +++ V+  F N +C +L+AT V   G+D+ D  ++I  N E  G   +H 
Sbjct: 276 A-IHGDLEQKERDQVLLRFANKSCSILVATDVAARGLDINDLQVVI--NYELPGSQDIHI 332

Query: 579 LR-GRVGRGEEISSCILLY 596
            R GR GR  +    + LY
Sbjct: 333 HRIGRTGRAGKKGLALSLY 351


>gi|326404232|ref|YP_004284314.1| putative ATP-dependent RNA helicase [Acidiphilium multivorum
           AIU301]
 gi|325051094|dbj|BAJ81432.1| putative ATP-dependent RNA helicase [Acidiphilium multivorum
           AIU301]
          Length = 571

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 151/366 (41%), Gaps = 44/366 (12%)

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           +P  VE    Q  L    ++   + +SA+   L+  ++   +L  +    GSGKT+   +
Sbjct: 1   MPFYVETPALQHALAARGYADPTAVQSAV---LEPEAEGRDLL--VSAQTGSGKTVAYGL 55

Query: 313 AMAAAV-------EAGGQ-AVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           A AA +        AG   A+I+AP   LA Q H E    Y      +V  + G  P   
Sbjct: 56  AFAATILDEDVLPPAGAPLALIIAPTRELAIQVHAELAWLYEHTGASVVSCVGGMDP--- 112

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLT 415
           RR+  +R   G  HI++GT    QD I+   L L     V++DE       G +  L+  
Sbjct: 113 RRE--QRALAGGCHIVVGTPGRLQDHIERRHLDLGRLRVVVLDEADEMLDLGFRDELEFI 170

Query: 416 QKATAP--HVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRKPIKTVIIPINRID 469
             A+      LL +AT       L      D  +I      +P      + + I  + ++
Sbjct: 171 LGASPADRRTLLFSATIAREIAALARQYQRDALRIDTVARNQPHADIEYRAIRIAAHEVE 230

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             +  L +   EG      C        S   SV + +  L E   +++A+  G +S  +
Sbjct: 231 HGLVNL-LRFHEGAGCLVFC--------STRESVRQLYGRLQERGFAAVAL-SGELSQSE 280

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           + + + S ++G  ++ IAT V   G+D+ +  ++I  +        LH+  GR GR    
Sbjct: 281 RNAALQSLRDGRARVCIATDVAARGLDLPNLDLVIHADLPANKATLLHR-SGRTGRAGRK 339

Query: 590 SSCILL 595
             C+L+
Sbjct: 340 GLCLLM 345


>gi|270593948|ref|ZP_06221474.1| transcription-repair coupling factor [Haemophilus influenzae
           HK1212]
 gi|270318399|gb|EFA29532.1| transcription-repair coupling factor [Haemophilus influenzae
           HK1212]
          Length = 116

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 48/76 (63%)

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           Q  +++  L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S
Sbjct: 2   QSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLS 61

Query: 447 KITEKPAGRKPIKTVI 462
            I+  PA R  IKT +
Sbjct: 62  IISTPPARRLSIKTFV 77


>gi|182677259|ref|YP_001831405.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633142|gb|ACB93916.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 577

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 150/364 (41%), Gaps = 50/364 (13%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA-- 334
           Q + ++  + +    NR L ++    GSGKT+   +A+ +A+ A  + + +AP   L   
Sbjct: 21  QPTPVQAAVLEWEDSNRDL-LVSAQTGSGKTIAYGLALGSALLADEKPLPVAPNAPLGLI 79

Query: 335 ---------QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
                    Q H E    Y      +V  + G  P+  RR     +  G AH+++GT   
Sbjct: 80  IAPTRELALQVHRELSWLYAYAGVRLVTCVGGMDPRRERRD----LDQG-AHVVVGTPGR 134

Query: 386 FQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLTQKATAPH--VLLMTATPIPRTL 435
            +D ++   L L     V++DE       G  + L     A AP   +LL +AT +PR +
Sbjct: 135 LRDHLERGALNLQNLKAVVLDEADEMLDLGFSEDLTTLLDAAAPERRMLLFSAT-LPRDI 193

Query: 436 V-LTSLGDIDISKIT-EKPAGR------KPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           V L      D ++I+   PAG       + ++ V   I  +  V+  L+ V + G  A+ 
Sbjct: 194 VALAQRYQRDAARISVTAPAGGHADIDYRLVRVVPDEIPHV--VVNLLRQVEAPG--AFV 249

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C         N R       +L      S  ++ G +S  ++   + + + G  ++ +A
Sbjct: 250 FC---------NTRESSRHLQALLSERGFSAVLLSGELSQNERNRALQALREGRARICVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +  +   A L    GR GR       +LL  P   + +   
Sbjct: 301 TDVAARGIDLPNLGLVIHADLPNDA-ATLQHRSGRTGRAGRKGLSVLLASPSRRRRAEQL 359

Query: 608 LSVL 611
           L  L
Sbjct: 360 LKTL 363


>gi|150005747|ref|YP_001300491.1| ATP-independent RNA helicase [Bacteroides vulgatus ATCC 8482]
 gi|149934171|gb|ABR40869.1| ATP-independent RNA helicase [Bacteroides vulgatus ATCC 8482]
          Length = 437

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 130/322 (40%), Gaps = 42/322 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    GSGKTL  L+ +  +++    G QA+++ P   LA Q  +  K  + NT     
Sbjct: 32  ILLSPTGSGKTLAYLLPLVQSLKPGITGVQAIVLVPSRELALQIDQVFK--SMNTPFKAV 89

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK-----LILVIVDEQHR--- 405
              G  P     + ++ +   Q  +IIGT     D +         +  +++DE  +   
Sbjct: 90  SCYGGRPAMEEHRTIKGM---QPSVIIGTPGRMNDHLSKQNFDADTVTTLVIDEFDKCLE 146

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATP---IPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           FG Q+ +   + Q        L++AT    IP+   L     ++     E+   R  +  
Sbjct: 147 FGFQEEMATVIGQLPNLQRRFLLSATDAEEIPQFTGLDKTIKLNFLNPEEQLTHRLHLYK 206

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           V+ P     E + +L   L   +     C         N R  VER     +       I
Sbjct: 207 VLSPEKDKLETLYKLLCTLG-SQSTLVFC---------NHRESVERVGKYLQSQKFQCGI 256

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQ 575
            HG M   D+E  +  F+NG+C +LI+T +   G+D+ +     IEN  H+ L       
Sbjct: 257 FHGGMEQDDRERSLYKFRNGSCHVLISTDLAARGLDIPE-----IENVVHYHLPANEDGY 311

Query: 576 LHQLRGRVGRGEEISSCILLYH 597
           +H+  GR  R E   +  ++ H
Sbjct: 312 IHR-NGRTARWEAEGNSYVILH 332


>gi|294777226|ref|ZP_06742682.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
 gi|294448940|gb|EFG17484.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
          Length = 439

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 130/322 (40%), Gaps = 42/322 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    GSGKTL  L+ +  +++    G QA+++ P   LA Q  +  K  + NT     
Sbjct: 34  ILLSPTGSGKTLAYLLPLVQSLKPGITGVQAIVLVPSRELALQIDQVFK--SMNTPFKAV 91

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK-----LILVIVDEQHR--- 405
              G  P     + ++ +   Q  +IIGT     D +         +  +++DE  +   
Sbjct: 92  SCYGGRPAMEEHRTIKGM---QPSVIIGTPGRMNDHLSKQNFDADTVTTLVIDEFDKCLE 148

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATP---IPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           FG Q+ +   + Q        L++AT    IP+   L     ++     E+   R  +  
Sbjct: 149 FGFQEEMATVIGQLPNLQRRFLLSATDAEEIPQFTGLDKTIKLNFLNPEEQLTHRLHLYK 208

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           V+ P     E + +L   L   +     C         N R  VER     +       I
Sbjct: 209 VLSPEKDKLETLYKLLCTLG-SQSTLVFC---------NHRESVERVGKYLQSQKFQCGI 258

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQ 575
            HG M   D+E  +  F+NG+C +LI+T +   G+D+ +     IEN  H+ L       
Sbjct: 259 FHGGMEQDDRERSLYKFRNGSCHVLISTDLAARGLDIPE-----IENVVHYHLPANEDGY 313

Query: 576 LHQLRGRVGRGEEISSCILLYH 597
           +H+  GR  R E   +  ++ H
Sbjct: 314 IHR-NGRTARWEAEGNSYVILH 334


>gi|238755823|ref|ZP_04617154.1| ATP-independent RNA helicase dbpA [Yersinia ruckeri ATCC 29473]
 gi|238705981|gb|EEP98367.1| ATP-independent RNA helicase dbpA [Yersinia ruckeri ATCC 29473]
          Length = 434

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 157/355 (44%), Gaps = 72/355 (20%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           T  Q +A+  IL  QD+  K +         GSGKT    I +   +  G    QA+++ 
Sbjct: 2   TPVQAAALPAILKGQDVRAKAK--------TGSGKTAAFGIGLLDKIAVGEFVTQALVLC 53

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q       + ++TQN +I+   + G  P  H+   L+ + H   HI++GT   
Sbjct: 54  PTRELADQVSKELRRLARFTQNIKILT--LCGGQPMGHQ---LDSLVHA-PHIVVGTPGR 107

Query: 386 FQDSIQYYKLIL-----VIVDEQHR---------------FGVQQRLKLTQKATAPHVLL 425
            Q+ ++   L+L     +++DE  R               +   QR  L   AT P  + 
Sbjct: 108 IQEHLRKRTLVLDDLKVLVLDEADRMLDMGFTDAINDVISYTPPQRQTLLFSATYPAGIE 167

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
             +  + R  +     ++++    E PA    I+ V     R ++ +  L  VLS  + A
Sbjct: 168 RISAKVQREPL-----NVEVESEGEDPA----IQQVFFETTR-EKRLPLLISVLSHYQPA 217

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             +   +    + + +SV   +++L     S +A+ HG +   D++ V+  F N +C++L
Sbjct: 218 SCV---VFCNTKKDCQSV---YDTLESRGISVLAL-HGDLEQRDRDQVLVRFSNRSCRVL 270

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLA---QLHQLR-GRVGR----GEEISSC 592
           +AT V   G+D+ D  +++     +F LA   ++H  R GR GR    G  +S C
Sbjct: 271 VATDVAARGLDIKDLELVV-----NFELAFDPEVHVHRIGRTGRAGMSGLAVSLC 320


>gi|307261515|ref|ZP_07543184.1| Primosomal protein N' [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306868798|gb|EFN00606.1| Primosomal protein N' [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 732

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 170/422 (40%), Gaps = 105/422 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++ G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 218 LLNGVTGSGKTEVYLQVIEEVLKRGEQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 273

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
             NM +  R  A  R  +G++ I+IGT  ALF    Q+ KL L+I+DE+H          
Sbjct: 274 HSNMNETERLNAWWRAKNGESAIVIGTRSALFS---QFEKLGLIIIDEEHDSSFKQQDGW 330

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           R+  +    L  K     ++L +ATP   ++     G      +T +    +  K  +I 
Sbjct: 331 RYHARDLAILRAKNLHIPIILGSATPSLESVQNVQNGKFIELSLTARAGNAQQAKQQLID 390

Query: 465 I--NRI-----DEVIERLKVVLSEGKKAY------------------WIC-------PQI 492
           +   RI     D ++  +K  L +G +                    W+C       P  
Sbjct: 391 LKTQRITAGLSDRLLAMMKRHLEQGNQVMLFLNRRGFAPVLLCHECGWMCECDACEKPYT 450

Query: 493 EEKKESNFRS-------VVERFNSLHEHFTSSIAIIHG-----------------RMSDI 528
             +K+   R        V+ R      H  S+  I  G                 ++S I
Sbjct: 451 YHQKQKILRCHHCASQRVIPRQCG---HCGSTNLITTGVGTEQLEQVLSEQFPTYQISRI 507

Query: 529 DKESV---------MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF-------- 571
           D++S          ++  + G  ++LI T ++  G    + +++ I N +          
Sbjct: 508 DRDSTARKGALENHLNDIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTDFRA 567

Query: 572 --GLAQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL-IAEEDLKQ 627
              LAQL+ Q+ GR GR E+    +L  H P     +  L  L   E G+L  A+E LK 
Sbjct: 568 EERLAQLYVQVAGRAGRAEKQGEVVLQTHYP----EHPLLKTL--LEQGYLAFAQEALKM 621

Query: 628 RK 629
           RK
Sbjct: 622 RK 623


>gi|224083374|ref|XP_002307002.1| predicted protein [Populus trichocarpa]
 gi|222856451|gb|EEE93998.1| predicted protein [Populus trichocarpa]
          Length = 895

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 159/368 (43%), Gaps = 52/368 (14%)

Query: 302 VGSGKTLVALIAM------AAAVEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++ M         VEAG   +  IMAP   L QQ +  I+K+T+   I   
Sbjct: 301 TGSGKTLAFVLPMLRHIKDQPPVEAGEGPIGLIMAPTRELVQQIHSDIRKFTKALGIRCV 360

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G    A +   L+R       I++ T     D +           ++  +++DE  R
Sbjct: 361 PVYGGSGVAQQISELKR----GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 416

Query: 406 F---GVQQRL-KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
               G + ++ ++ Q     H  ++ +   PR +   +L    ++K  E   G + +  V
Sbjct: 417 MFDMGFEPQITRIVQNIRPDHQTVLFSATFPRQV--ETLARKVLNKPVEIQVGGRSV--V 472

Query: 462 IIPINRIDEV----------IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
              IN++ EV          +E L V   +GK   ++  Q ++K ++ FR +++      
Sbjct: 473 NKDINQLVEVRPEGERWFRLLELLGVWSEKGKILVFV--QSQDKCDALFRDLLK------ 524

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
             F      +HG     D+ES +  FK+  C LLIAT+V   G+DV D  ++I  +  + 
Sbjct: 525 --FGHPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKDLELVINYDVPNH 582

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
               +H++ GR GR       I  +    ++ +   +  L+ +E    +  +DLK   +G
Sbjct: 583 YEDYVHRV-GRTGRAGRKGCAITFFSEDDARYAPDLVKALELSEQ---VVPQDLKALADG 638

Query: 632 EILGIKQS 639
            ++ + Q 
Sbjct: 639 FMVKVNQG 646


>gi|190150357|ref|YP_001968882.1| primosomal protein N' [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|189915488|gb|ACE61740.1| primosomal protein N' [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
          Length = 738

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 170/422 (40%), Gaps = 105/422 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++ G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 224 LLNGVTGSGKTEVYLQVIEEVLKRGEQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 279

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
             NM +  R  A  R  +G++ I+IGT  ALF    Q+ KL L+I+DE+H          
Sbjct: 280 HSNMNETERLNAWWRAKNGESAIVIGTRSALFS---QFEKLGLIIIDEEHDSSFKQQDGW 336

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           R+  +    L  K     ++L +ATP   ++     G      +T +    +  K  +I 
Sbjct: 337 RYHARDLAILRAKNLHIPIILGSATPSLESVQNVQNGKFIELSLTARAGNAQQAKQQLID 396

Query: 465 I--NRI-----DEVIERLKVVLSEGKKAY------------------WIC-------PQI 492
           +   RI     D ++  +K  L +G +                    W+C       P  
Sbjct: 397 LKTQRITAGLSDRLLAMMKQHLEQGNQVMLFLNRRGFAPVLLCHECGWMCECDACEKPYT 456

Query: 493 EEKKESNFRS-------VVERFNSLHEHFTSSIAIIHG-----------------RMSDI 528
             +K+   R        V+ R      H  S+  I  G                 ++S I
Sbjct: 457 YHQKQKILRCHHCASQRVIPRQCG---HCGSTNLITTGVGTEQLEQVLSEQFPTYQISRI 513

Query: 529 DKESV---------MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF-------- 571
           D++S          ++  + G  ++LI T ++  G    + +++ I N +          
Sbjct: 514 DRDSTARKGALENHLNDIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTDFRA 573

Query: 572 --GLAQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL-IAEEDLKQ 627
              LAQL+ Q+ GR GR E+    +L  H P     +  L  L   E G+L  A+E LK 
Sbjct: 574 EERLAQLYVQVAGRAGRAEKQGEVVLQTHYP----EHPLLKTL--LEQGYLAFAQEALKM 627

Query: 628 RK 629
           RK
Sbjct: 628 RK 629


>gi|212528760|ref|XP_002144537.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
 gi|210073935|gb|EEA28022.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
          Length = 503

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 148/348 (42%), Gaps = 55/348 (15%)

Query: 300 GDVGSGKTLV-ALIAMAAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   L  +   V++  +       AVI+ P   LA Q YE ++ Y     + 
Sbjct: 131 AETGSGKTLAFGLPCVKNMVDSKKKLKPSHPRAVILTPTRELAMQIYEQLEGYAPRVSVR 190

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
           V  I G + +  +R+AL+  A     I++ T    +D     +I   K+  +++DE  R 
Sbjct: 191 VTCIFGGVRKDEQREALKDTA-----IVVATPGRLKDLESEGAINLSKVKYLVLDEADRM 245

Query: 407 ---GVQQRLK-------LTQKATA------PHVLLMTATPIPRTLVLTSLGDIDISKITE 450
              G +Q +K       ++++ TA      P  +   A    +  V+ ++G     K +E
Sbjct: 246 LDKGFEQDIKDIVAPMPVSRRQTAMFTATWPVSVRNLANSFTQDPVMVTVG----GKPSE 301

Query: 451 KPAGRKPIKTVIIPI------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            P     IK V+  +      NR+ +++ +L    S+GK   +            ++   
Sbjct: 302 DPRANTRIKQVVEVLDGRDKENRLTQILAKLTRESSQGKILVFCL----------YKKEA 351

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            R   L +    ++A IHG +S  D+   + SFK+G   +L+AT V   G+D+     ++
Sbjct: 352 MRIERLIQSRGYAVAGIHGDLSQSDRFKSLASFKSGAVPILVATDVAARGLDIPAVKTVV 411

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
                      +H++ GR GR       I L+      +S   ++VLK
Sbjct: 412 NVTFPLTIEDYVHRI-GRTGRAGADGHAITLFTENDKAHSGALINVLK 458


>gi|307263700|ref|ZP_07545308.1| Primosomal protein N' [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|306870954|gb|EFN02690.1| Primosomal protein N' [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 732

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 170/422 (40%), Gaps = 105/422 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++ G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 218 LLNGVTGSGKTEVYLQVIEEVLKRGEQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 273

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
             NM +  R  A  R  +G++ I+IGT  ALF    Q+ KL L+I+DE+H          
Sbjct: 274 HSNMNETERLNAWWRAKNGESAIVIGTRSALFS---QFEKLGLIIIDEEHDSSFKQQDGW 330

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           R+  +    L  K     ++L +ATP   ++     G      +T +    +  K  +I 
Sbjct: 331 RYHARDLAILRAKNLHIPIILGSATPSLESVQNVQNGKFIELSLTARAGNAQQAKQQLID 390

Query: 465 I--NRI-----DEVIERLKVVLSEGKKAY------------------WIC-------PQI 492
           +   RI     D ++  +K  L +G +                    W+C       P  
Sbjct: 391 LKTQRITAGLSDRLLAMMKQHLEQGNQVMLFLNRRGFAPVLLCHECGWMCECDACEKPYT 450

Query: 493 EEKKESNFRS-------VVERFNSLHEHFTSSIAIIHG-----------------RMSDI 528
             +K+   R        V+ R      H  S+  I  G                 ++S I
Sbjct: 451 YHQKQKILRCHHCASQRVIPRQCG---HCGSTNLITTGVGTEQLEQVLSEQFPTYQISRI 507

Query: 529 DKESV---------MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF-------- 571
           D++S          ++  + G  ++LI T ++  G    + +++ I N +          
Sbjct: 508 DRDSTARKGALENHLNDIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTDFRA 567

Query: 572 --GLAQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL-IAEEDLKQ 627
              LAQL+ Q+ GR GR E+    +L  H P     +  L  L   E G+L  A+E LK 
Sbjct: 568 EERLAQLYVQVAGRAGRAEKQGEVVLQTHYP----EHPLLKTL--LEQGYLAFAQEALKM 621

Query: 628 RK 629
           RK
Sbjct: 622 RK 623


>gi|329955215|ref|ZP_08296172.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
 gi|328526214|gb|EGF53233.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
          Length = 448

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 148/363 (40%), Gaps = 55/363 (15%)

Query: 265 ILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ILRN+     T  QESA     QD  Q ++ L +L    GSGKTL  L+ +  +++A   
Sbjct: 6   ILRNLRIEQLTPMQESA-----QDAYQSDKDL-VLLSPTGSGKTLAFLLPLVQSLKAEIQ 59

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G QAV++ P   LA Q     K  +  T        G  P     + +  +      +II
Sbjct: 60  GVQAVVLVPSRELALQIETVFK--SMGTPFKAMSCYGGRPAMEEHRTMRGV---NPAVII 114

Query: 381 GTHALFQDSIQ------YYKLILVI--VDEQHRFGVQQRLK--LTQKATAPHVLLMTATP 430
           GT     D ++       +  +LVI   D+   FG    +   + Q       +L++AT 
Sbjct: 115 GTPGRMNDHLRKRNFDTRFVTVLVIDEFDKCLEFGFHDEMAEVIGQLPALKKRVLLSATD 174

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERL---KVVLSEGKKA 485
                    +G         + +G     + +I +N + E  V ERL   KV+  E  K 
Sbjct: 175 AEEIPQFAGVGG--------EASGNAASSSRVIKLNFLSEEAVSERLNLQKVISPEKDKL 226

Query: 486 ---YWICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
              Y +   + +       N+R  VER  S  +         HG M   D+E  +  F+N
Sbjct: 227 ETLYRLLCTLGDHSTLVFVNYRESVERVVSYLKSKKFPCDAFHGGMEQDDRERALYKFRN 286

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQLHQLRGRVGRGEEISSCIL 594
           G+C +L++T +   G+D+       I+N  H+ +     A  H+  GR  R E   S  +
Sbjct: 287 GSCPVLVSTDLAARGLDIPG-----IDNVVHYHIPVNEEAFTHR-NGRTARWEARGSSFI 340

Query: 595 LYH 597
           L H
Sbjct: 341 LLH 343


>gi|300088260|ref|YP_003758782.1| DEAD/DEAH box helicase domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527993|gb|ADJ26461.1| DEAD/DEAH box helicase domain protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 429

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 143/326 (43%), Gaps = 28/326 (8%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA----VIMA 328
           PT  Q  AI   LQ      R L I     G+GKT   ++ M   +  G +     +I++
Sbjct: 24  PTPIQAQAIPPALQ-----GRDL-IGLAQTGTGKTTAFVLPMLQRLLRGPRGKLRGLIVS 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA+Q Y+ +K  +Q+T +    I G +   PQ  + +A   I       ++    +
Sbjct: 78  PTRELAEQIYDSVKTLSQHTGLRAMAIYGGVGMEPQKAKLRAGTDIVIACPGRLL--DHV 135

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +Q +I +  + ++++DE  R      L   +K     +L     P  +TL+ ++    D+
Sbjct: 136 WQGTIDFDDVEMLVIDEADRMFDMGFLPDIRK-----ILRCLVRPERQTLLFSATMPADV 190

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW--ICPQIEEKKE----SN 499
            K+ ++     P+   I  +     V   L  V  + K A    I  QIE+       + 
Sbjct: 191 RKLVQEFL-TDPVTVQIGTVAPAVTVTHALYPVRQDLKTALLKQILRQIEDAGSVLVFTR 249

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ER          ++A I G +S   +++ +D FK+GT K+L+AT +   GIDV D
Sbjct: 250 TKHRTERVAIALRQAGYAVASIQGNLSQYRRQAALDGFKDGTFKVLVATDIASRGIDVSD 309

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGR 585
            S +I  +      A +H++ GR GR
Sbjct: 310 VSHVINYDMPDTADAYIHRI-GRTGR 334


>gi|171909846|ref|ZP_02925316.1| DEAD/DEAH box helicase domain protein [Verrucomicrobium spinosum
           DSM 4136]
          Length = 377

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 153/361 (42%), Gaps = 45/361 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT-------LVALIAMAAAVEAGG-QA 324
           PT  Q+  I  +L      +R   I Q   G+GKT       L  +I  AA  +AG    
Sbjct: 25  PTAIQQQTIPHVL-----AHRGDLIAQAQTGTGKTAAFGLPMLERIIPHAAKAKAGQIDG 79

Query: 325 VIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +I+AP   LA+Q  + + K+T++   +I VE ITG      +   L R      HI++GT
Sbjct: 80  LIVAPTRELAKQIGKQLFKFTKHVPDKIFVETITGGDDMDLQISRLRR----PTHIVVGT 135

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D +Q   L L     +++DE       + L L  K        +TA     T + 
Sbjct: 136 PGRLMDLVQREALNLSKVRYLVLDE-----ADEMLSLGFKKELEQFFQLTAKSRKNTWLF 190

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++     I ++ E     +  +  I   + ++  I    ++    +K   I   +E++ E
Sbjct: 191 SATIPEGIQELIEGYMEPEAHRITIDKAHVVNRDITHRYIICDRTEKLDRISEFLEDRSE 250

Query: 498 SN----FRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  R++    N   E  T   S+ ++HG +S ++++ VM +FK    + L+ T V 
Sbjct: 251 DRGVIFCRTIAGSINLAKELGTRNFSVGVLHGDLSQLERDKVMRAFKKERLQYLVTTDVS 310

Query: 552 EVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
             GIDVV  + +I     E  E++     H+  GR GR        L +  P  K++ TR
Sbjct: 311 ARGIDVVGLAFVIHHQLPEQTEYY----THR-SGRTGRAGR-KGLSLAFIEPKEKSAITR 364

Query: 608 L 608
           L
Sbjct: 365 L 365


>gi|254168903|ref|ZP_04875743.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|197622167|gb|EDY34742.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 451

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 141/325 (43%), Gaps = 33/325 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
           PT+ QE AI      ++ K R L I+Q   GSGKTL  LI +   + +G +A+++ P   
Sbjct: 27  PTEVQEKAIP-----LAIKGRDL-IVQSKTGSGKTLAFLIPIFENLNSGLEAIVLVPTRE 80

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LAQQ     +   +       +I G  P   +   L+      A ++IGT     D ++ 
Sbjct: 81  LAQQVERVARSIGKAHGKRTVVIYGGAPMERQIAGLK-----GASMVIGTPGRVMDLMRR 135

Query: 393 YKLIL-----VIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGD 442
             L L      ++DE  R    G    +K  L +      ++L +AT  P  + L     
Sbjct: 136 GYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQMMLFSATMPPEIISLARRYM 195

Query: 443 IDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            +  KI  +E     + +    + +  I+++ +   +++SE  K    C     +K  N 
Sbjct: 196 KNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLISERGKYLIFCNT--RRKTKNI 253

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             +++++    + F      +HG M    +   MD+FK G   +L++T V   GIDV   
Sbjct: 254 AEILQKYG--FKAFA-----LHGDMRQATRTRTMDAFKQGKIDILVSTDVAARGIDVHGI 306

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGR 585
           + ++  +   +    +H++ GR GR
Sbjct: 307 THVVNYDVPLYPKDYVHRI-GRTGR 330


>gi|225677315|ref|ZP_03788292.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590642|gb|EEH11892.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 402

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 158/358 (44%), Gaps = 52/358 (14%)

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGKTLV 309
           +G+P ++     Q + +N  F PT  Q  AI   LQ          IL     G+GKTL 
Sbjct: 1   MGLPASLR----QALDKNNLFVPTPIQIQAIPLALQGKD-------ILGSAQTGTGKTLA 49

Query: 310 ALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIVEIITGNMPQAHRR 365
             I + A +      G A+++ P   LA Q    I+K  +QN+ + V ++ G  P   + 
Sbjct: 50  FAIPLVAKLLNEPNTGSALVIVPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQL 109

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHR-----FGVQQRLKLT 415
             L++    +  I+IGT     D I+   LI     ++++DE  R     FGVQ      
Sbjct: 110 NQLQK----KPQIVIGTPGRIIDHIERKTLINRNVSVLVLDETDRMFDMGFGVQIEE--- 162

Query: 416 QKATAPHVLLMTATP-IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                    +M   P I +TL+ ++    DI K+ EK   R P +  +         I++
Sbjct: 163 ---------IMKHLPKIRQTLMFSATLPGDIVKLAEKYLNR-PERISVDCEATTSVKIKQ 212

Query: 475 LKVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
             V  SE +K   +  Q+ +++ S        R   +  N LH+   S++AI HG +   
Sbjct: 213 EIVYASESEKYEKLVTQLCQREGSIIIFVKTKRGADQLANRLHKDDYSALAI-HGDLRQH 271

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            +E V++SF+ G  ++++AT V   G+D+     +I  +A       +H++ GR  R 
Sbjct: 272 KRERVINSFRRGRNQIMVATDVASRGLDIPHIQHVINYDAPQSQADYIHRI-GRTARA 328


>gi|322515197|ref|ZP_08068196.1| primosome assembly protein PriA [Actinobacillus ureae ATCC 25976]
 gi|322118807|gb|EFX91008.1| primosome assembly protein PriA [Actinobacillus ureae ATCC 25976]
          Length = 738

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 170/422 (40%), Gaps = 105/422 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++ G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 224 LLNGVTGSGKTEVYLQVIEEVLKRGEQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 279

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
             NM +  R  A  R  +G++ I+IGT  ALF    Q+ KL L+I+DE+H          
Sbjct: 280 HSNMNETERLNAWLRAKNGESAIVIGTRSALFS---QFEKLGLIIIDEEHDSSFKQQDGW 336

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           R+  +    L  K     ++L +ATP   ++     G      +T +    +  K  +I 
Sbjct: 337 RYHARDLAILRAKNLHIPIILGSATPSLESVQNAQNGKFIELSLTARAGNAQQAKQQLID 396

Query: 465 I--NRI-----DEVIERLKVVLSEGKKAY------------------WIC-------PQI 492
           +   RI     D ++  +K  L +G +                    W+C       P  
Sbjct: 397 LKTQRITAGLSDRLLAMMKQHLEQGNQVMLFLNRRGFAPVLLCHECGWMCECDACEKPYT 456

Query: 493 EEKKESNFRS-------VVERFNSLHEHFTSSIAIIHG-----------------RMSDI 528
             +K+   R        V+ R      H  S+  I  G                 ++S I
Sbjct: 457 YHQKQKILRCHHCSSQRVIPRQCG---HCGSTNLITTGVGTEQLEQVLSEQFPTYQISRI 513

Query: 529 DKESV---------MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF-------- 571
           D++S          ++  + G  ++LI T ++  G    + +++ I N +          
Sbjct: 514 DRDSTARKGALENHLNDIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTDFRA 573

Query: 572 --GLAQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL-IAEEDLKQ 627
              LAQL+ Q+ GR GR E+    +L  H P     +  L  L   E G+L  A+E LK 
Sbjct: 574 EERLAQLYVQVAGRAGRAEKQGEVVLQTHYP----EHPLLKTL--LEQGYLAFAQEALKM 627

Query: 628 RK 629
           RK
Sbjct: 628 RK 629


>gi|254166522|ref|ZP_04873376.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|289596178|ref|YP_003482874.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|197624132|gb|EDY36693.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|289533965|gb|ADD08312.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 451

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 141/325 (43%), Gaps = 33/325 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
           PT+ QE AI      ++ K R L I+Q   GSGKTL  LI +   + +G +A+++ P   
Sbjct: 27  PTEVQEKAIP-----LAIKGRDL-IVQSKTGSGKTLAFLIPIFENLNSGLEAIVLVPTRE 80

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LAQQ     +   +       +I G  P   +   L+      A ++IGT     D ++ 
Sbjct: 81  LAQQVERVARSIGKAHGKRTVVIYGGAPMERQIAGLK-----GASMVIGTPGRVMDLMRR 135

Query: 393 YKLIL-----VIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGD 442
             L L      ++DE  R    G    +K  L +      ++L +AT  P  + L     
Sbjct: 136 GYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQMMLFSATMPPEIISLARRYM 195

Query: 443 IDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            +  KI  +E     + +    + +  I+++ +   +++SE  K    C     +K  N 
Sbjct: 196 KNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLISERGKYLIFCNT--RRKTKNI 253

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             +++++    + F      +HG M    +   MD+FK G   +L++T V   GIDV   
Sbjct: 254 AEILQKYG--FKAFA-----LHGDMRQATRTRTMDAFKQGKIDILVSTDVAARGIDVHGI 306

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGR 585
           + ++  +   +    +H++ GR GR
Sbjct: 307 THVVNYDVPLYPKDYVHRI-GRTGR 330


>gi|148992424|ref|ZP_01822119.1| peptide chain release factor 2 [Streptococcus pneumoniae SP9-BS68]
 gi|168488430|ref|ZP_02712629.1| ATP-dependent RNA helicase [Streptococcus pneumoniae SP195]
 gi|147928741|gb|EDK79754.1| peptide chain release factor 2 [Streptococcus pneumoniae SP9-BS68]
 gi|183573033|gb|EDT93561.1| ATP-dependent RNA helicase [Streptococcus pneumoniae SP195]
 gi|332073114|gb|EGI83593.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17570]
          Length = 447

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 155/352 (44%), Gaps = 38/352 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + F+ PT+ Q+  I  +L       R L + +   GSGKT   L+ +   ++     
Sbjct: 16  LKELKFTTPTEVQDKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDEASDS 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHII 379
            QAVI AP   LA Q Y+  ++ + ++ + V ++   G   +A   + +E++A  Q HI+
Sbjct: 70  VQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKA---RQIEKLASNQPHIV 126

Query: 380 IGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTAT 429
           IGT     D ++      +K    +VDE         L+   K           ++ +AT
Sbjct: 127 IGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSAT 186

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            IP+ L         + K    P   K IKT  +  + ID  +   K    +  + YW+ 
Sbjct: 187 -IPQKLQPF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-HDKNAQIYWLT 237

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             ++      F +   R + LH + TS    +A IHG ++  +++ +M+  +N   + ++
Sbjct: 238 QLMQPYLAMIFVNTKTRADELHSYLTSQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 298 ATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|239629709|ref|ZP_04672740.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239528395|gb|EEQ67396.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 448

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 154/371 (41%), Gaps = 37/371 (9%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M  QFK+    P  ++G  A  I      +PT  Q+  I  +L+  +       + Q   
Sbjct: 1   MENQFKQFQLKPFVIDGLNAMAIT-----APTPIQQKVIPALLRGENI------VGQSQT 49

Query: 303 GSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-VEIITGN 358
           GSGKT   LV L++M    E   Q VI AP   LA Q Y   ++  Q    I +  + G 
Sbjct: 50  GSGKTHAFLVPLLSMVDPTEDATQVVITAPSRELANQIYAVAQQLIQTEPAIRINRLVGG 109

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           M    ++K ++++ + Q H+ IGT     D I+ Y L+   V    R  V     +T   
Sbjct: 110 M---DKQKQIDKLQNHQPHVAIGTPGRILDMIKSYDLVPSSV----RHFVVDEADMTLDM 162

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIER 474
                +   A+  P  L +         K+  +P  RK    P    + P + I + +E 
Sbjct: 163 GFLETVDAIASSFPDHLQMAVFSATIPQKL--EPFLRKYMDNPTTIELKPQSVIADTVEN 220

Query: 475 LKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           + ++ ++G+    +  Q+            +N ++ V+  +   +H    +A IHG +  
Sbjct: 221 I-LIAAKGRDKNELIYQLVTMGHPFLVLIFANTKTSVDAIHDFLKHQGLKVAKIHGGIQP 279

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            ++  VM    +   + ++AT +   GID+   S++I           +H++ GR GR  
Sbjct: 280 RERRRVMKDVADLKYQYVVATDLAARGIDIKGVSMVINAEIPRDNEFFIHRV-GRTGRNG 338

Query: 588 EISSCILLYHP 598
              + + LY P
Sbjct: 339 MAGTAVTLYEP 349


>gi|255942831|ref|XP_002562184.1| Pc18g03460 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586917|emb|CAP94570.1| Pc18g03460 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 790

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 108/443 (24%), Positives = 183/443 (41%), Gaps = 90/443 (20%)

Query: 188 WIEK--DLLQKKSFPSIAEAFNIIHN----PRKAKDFEWTS-PAR-----ERLAYDELLA 235
           W EK  DL++++ +    E FNI       P   + +E +S P R     ER+ Y +  A
Sbjct: 323 WSEKRLDLMRERDWRIFKEDFNIATKGGSVPNPMRSWEESSLPKRLLELVERVGYKDPTA 382

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q A + +  Q +  IG+ +   GK A  +L      P     SA+  + ++  +KN   
Sbjct: 383 IQRAAIPIAMQSRDLIGVAVTGSGKTAAFLL------PLLVYISALPRLDENEWRKNE-- 434

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEI 354
                                    G  A+++AP   LAQQ     KK+TQ     +V I
Sbjct: 435 -------------------------GPYAIVLAPTRELAQQIEIEAKKFTQPLGFNVVSI 469

Query: 355 ITGNMPQAHRRKALERIA---HGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
           + G+        +LE  A      A III T     D I+   L+L     VI+DE  R 
Sbjct: 470 VGGH--------SLEEQAFSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRM 521

Query: 406 --FGVQQ-------RLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              G ++        L +T +      A + + M+     +T++ T+     + +I  K 
Sbjct: 522 IDLGFEEPVNKILDALPVTNEKPDTEEAENSMAMSQHQYRQTMMYTATMPAAVERIARKY 581

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             R  I T+      +D V +R++++  E K+   +    E     +FR  +  F ++  
Sbjct: 582 LRRPAIITIGGVGEAVDTVEQRVEMISGEDKRKKRLA---EILSSGDFRPPIIVFVNIKR 638

Query: 513 HFTS----------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +  +          S   +HG  +   +E+ + S +NG+  +L+AT +   GIDV D S+
Sbjct: 639 NCDAIAREIKQMGFSSVTLHGSKTQDQREAALASVRNGSTDVLVATDLAGRGIDVPDVSL 698

Query: 563 IIIENAEHFGLAQLHQLRGRVGR 585
           +I  N      +  H++ GR GR
Sbjct: 699 VINFNMATSIESYTHRI-GRTGR 720


>gi|315301109|ref|ZP_07872401.1| transcription-repair coupling factor [Listeria ivanovii FSL F6-596]
 gi|313630521|gb|EFR98362.1| transcription-repair coupling factor [Listeria ivanovii FSL F6-596]
          Length = 237

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 58/107 (54%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E G   + + ++ ++     P+  T  Q  +I +I +DM +   M R+L GDVG GKT V
Sbjct: 120 EKGYAFSPDEEMQREFEDAFPYQETDDQLRSIAEIKKDMERPRPMDRLLVGDVGYGKTEV 179

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           AL A   A+  G Q   + P  ILAQQH+E +K+  Q   I + +++
Sbjct: 180 ALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLS 226


>gi|319899018|ref|YP_004159111.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
 gi|319402982|emb|CBI76535.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
          Length = 454

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 146/341 (42%), Gaps = 47/341 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q + I  ILQ    K  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 28  TPTPIQSATIPHILQ----KKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARIPRTL 81

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  +  + V ++ G +   H+ + LER     A I+I T   
Sbjct: 82  ILEPTRELAAQVKENYDKYGIHHNLNVALLIGGVSFEHQDRKLER----GADILIATPGR 137

Query: 386 FQDSIQYYKLILV-----IVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPR 433
             D  +  KL+LV     ++DE  R         +++  KLT        L  +AT  P 
Sbjct: 138 LLDHFERGKLLLVGVEILVIDEADRMLDMGFIPNIERICKLT--PFTRQTLFFSATMAPE 195

Query: 434 TLVLT-----SLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
              LT     S   ++I+K   T K   ++ +K+   P ++   + E +     E K A 
Sbjct: 196 ITQLTKKFLHSPIYVEITKTFSTAKTITQRLVKSGSKPWDKRAILRELIHKEGDELKNAI 255

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C        +  + + E F SL +H   S+  +HG M    + + + +FK+    LL+
Sbjct: 256 IFC--------NRKKDISELFRSLVKH-NFSVGALHGDMDQHSRTNTLANFKDNKLTLLV 306

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
           A+ V   G+D+   S +   +        +H++ GR GR +
Sbjct: 307 ASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRI-GRTGRAK 346


>gi|191637659|ref|YP_001986825.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
 gi|190711961|emb|CAQ65967.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
 gi|327381715|gb|AEA53191.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           casei LC2W]
 gi|327384881|gb|AEA56355.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           casei BD-II]
          Length = 448

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 154/371 (41%), Gaps = 37/371 (9%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M  QFK+    P  ++G  A  I      +PT  Q+  I  +L+  +       + Q   
Sbjct: 1   MENQFKQFQLKPFIIDGLNAMAIT-----APTPIQQKVIPALLRGENI------VGQSQT 49

Query: 303 GSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-VEIITGN 358
           GSGKT   LV L++M    E   Q VI AP   LA Q Y   ++  Q    I +  + G 
Sbjct: 50  GSGKTHAFLVPLLSMVDPTEDATQVVITAPSRELANQIYAVAQQLIQTEPAIRINRLVGG 109

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           M    ++K ++++ + Q H+ IGT     D I+ Y L+   V    R  V     +T   
Sbjct: 110 M---DKQKQIDKLQNHQPHVAIGTPGRILDMIKSYDLVPSSV----RHFVVDEADMTLDM 162

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIER 474
                +   A+  P  L +         K+  +P  RK    P    + P + I + +E 
Sbjct: 163 GFLETVDAIASSFPDHLQMAVFSATIPQKL--EPFLRKYMDNPTTIELKPQSVIADTVEN 220

Query: 475 LKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           + ++ ++G+    +  Q+            +N ++ V+  +   +H    +A IHG +  
Sbjct: 221 I-LIAAKGRDKNELIYQLVTMGHPFLVLIFANTKTSVDAIHDFLKHQGLKVAKIHGGIQP 279

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            ++  VM    +   + ++AT +   GID+   S++I           +H++ GR GR  
Sbjct: 280 RERRRVMKDVADLKYQYVVATDLAARGIDIKGVSMVINAEIPRDNEFFIHRV-GRTGRNG 338

Query: 588 EISSCILLYHP 598
              + + LY P
Sbjct: 339 MAGTAVTLYEP 349


>gi|332796635|ref|YP_004458135.1| DEAD/DEAH box helicase domain-containing protein [Acidianus
           hospitalis W1]
 gi|332694370|gb|AEE93837.1| DEAD/DEAH box helicase domain protein [Acidianus hospitalis W1]
          Length = 370

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 141/326 (43%), Gaps = 41/326 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
           +PTK QE AI  +LQ  S       + Q   GSGKT   LI +   +E   QA+++ P  
Sbjct: 40  NPTKVQELAIPQMLQGKSV------LAQAKTGSGKTAAYLIPI---IEKEEQALVLTPTR 90

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD--- 388
            LA+Q     +K  +  ++ + +I G +P + + K        +  I+IGT     D   
Sbjct: 91  ELAEQVANEARKLGKYKKMSIGVIIGGVPYSGQDK------EAKKDIVIGTPGRILDLWG 144

Query: 389 --SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSL 440
              +   +  + IVDE  R    G    +++  K   P +    +  +P    +L     
Sbjct: 145 KGYLDLSRFSVAIVDEVDRMFDMGFIDDVRMILKNANPDMYGFFSATVPEEVESLAKEFS 204

Query: 441 GDIDISKITE-KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
            +I+  K+ + KP     I+ +   +    + I +LK  L + +K             + 
Sbjct: 205 PNIEFLKVDDIKPV---EIEHLFYEVKGWRDKISKLKDELDDNEKTIVFV--------NT 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            + V E +  L + F   I+++HG +    +   + SF+ G   +L++T +   GIDV+D
Sbjct: 254 KKKVEELYEELRDDF--EISLLHGDLPQRVRLRNLSSFRRGKTNVLLSTDLASRGIDVID 311

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGR 585
            + +I  +        +H++ GR GR
Sbjct: 312 VTKVINFDTPRDVETYIHRV-GRTGR 336


>gi|71066282|ref|YP_265009.1| replication restart DNA helicase PriA [Psychrobacter arcticus
           273-4]
 gi|71039267|gb|AAZ19575.1| replication restart DNA helicase PriA [Psychrobacter arcticus
           273-4]
          Length = 789

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 90/210 (42%), Gaps = 19/210 (9%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P      Q+ A+  I+     K     +L G  GSGKT V L AM A +EAG Q +
Sbjct: 223 LAKMPLDLNDEQQIAVTAIVAAHEAKRYTGFLLNGITGSGKTEVYLQAMQAVLEAGKQVL 282

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           I+ P IG+  Q    F  ++  +    + ++   +   HR +  +    G A IIIGT +
Sbjct: 283 ILVPEIGLTPQTRARFASRFAAH----IVLLHSGINNTHRLQGWQDCRTGHAQIIIGTRS 338

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ-----------KATAPHVLLMTATPIPR 433
                  +  L L++VDE H    +Q+  L             +A  P V+L TATP   
Sbjct: 339 AVL--YPFADLGLIVVDEAHDGSYKQQDTLRYHAADVALYRGLQAKIP-VVLGTATPSLE 395

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            L L   G +    +  +P   KP    +I
Sbjct: 396 YLKLVDEGKLVEYLLLTRPGNAKPAPMQLI 425


>gi|215414948|emb|CAT01056.1| C. elegans protein T07D4.4e, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 497

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 139/325 (42%), Gaps = 61/325 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT+ QE+A+  +L +         I Q   G+GKT   ++ M   ++      Q + +AP
Sbjct: 116 PTRIQETALPLLLMEPPSN----LIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAP 171

Query: 330 IGILAQQHYEFIKK---YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA+Q  E ++K   +  N +I   I  GNM     RK  E+I       +IGT  + 
Sbjct: 172 TLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTEQI-------VIGTPGIT 224

Query: 387 QDSIQYYKLI------LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           +D +Q YK I       +++DE       Q    T  +T  + ++  A+   ++++ ++ 
Sbjct: 225 RDYLQKYKCIDPSKIRCLVLDEADVMIYHQ--GFTDISTTIYNMVEDASDSVQSMLFSAT 282

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D  +     K           I  N I  +++R +  L   K+ Y  C      ++S +
Sbjct: 283 YDEPVINFATK-----------IIKNAIVVMLKREEQALPNIKQFYVQC----ACRDSKY 327

Query: 501 RSVVERFNSL------------------HEHFTS---SIAIIHGRMSDIDKESVMDSFKN 539
            ++V  ++ L                  +E+  +    + ++HG M+ +++   +  FK 
Sbjct: 328 AAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKR 387

Query: 540 GTCKLLIATTVIEVGIDVVDASIII 564
           G  K+LI T V   GIDV   S++I
Sbjct: 388 GDFKVLITTNVFARGIDVAQVSVVI 412


>gi|307245942|ref|ZP_07528025.1| Primosomal protein N' [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307254916|ref|ZP_07536738.1| Primosomal protein N' [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307259357|ref|ZP_07541084.1| Primosomal protein N' [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306853161|gb|EFM85383.1| Primosomal protein N' [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306862157|gb|EFM94129.1| Primosomal protein N' [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306866593|gb|EFM98454.1| Primosomal protein N' [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 732

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 170/422 (40%), Gaps = 105/422 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++ G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 218 LLNGVTGSGKTEVYLQVIEEVLKRGEQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 273

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
             NM +  R  A  R  +G++ I+IGT  ALF    Q+ KL L+I+DE+H          
Sbjct: 274 HSNMNETERLNAWLRAKNGESAIVIGTRSALFS---QFEKLGLIIIDEEHDSSFKQQDGW 330

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           R+  +    L  K     ++L +ATP   ++     G      +T +    +  K  +I 
Sbjct: 331 RYHARDLAILRAKNLHIPIILGSATPSLESVQNVQNGKFIELSLTARAGNAQQAKQQLID 390

Query: 465 I--NRI-----DEVIERLKVVLSEGKKAY------------------WIC-------PQI 492
           +   RI     D ++  +K  L +G +                    W+C       P  
Sbjct: 391 LKTQRITAGLSDRLLAMMKQHLEQGNQVMLFLNRRGFAPVLLCHECGWMCECDACEKPYT 450

Query: 493 EEKKESNFRS-------VVERFNSLHEHFTSSIAIIHG-----------------RMSDI 528
             +K+   R        V+ R      H  S+  I  G                 ++S I
Sbjct: 451 YHQKQKILRCHHCASQRVIPRQCG---HCGSTNLITTGVGTEQLEQVLSEQFPTYQISRI 507

Query: 529 DKESV---------MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF-------- 571
           D++S          ++  + G  ++LI T ++  G    + +++ I N +          
Sbjct: 508 DRDSTARKGALENHLNDIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTDFRA 567

Query: 572 --GLAQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL-IAEEDLKQ 627
              LAQL+ Q+ GR GR E+    +L  H P     +  L  L   E G+L  A+E LK 
Sbjct: 568 EERLAQLYVQVAGRAGRAEKQGEVVLQTHYP----EHPLLKTL--LEQGYLAFAQEALKM 621

Query: 628 RK 629
           RK
Sbjct: 622 RK 623


>gi|167571168|ref|ZP_02364042.1| ATP-dependent DNA helicase RecG [Burkholderia oklahomensis C6786]
          Length = 772

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 14/212 (6%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+    I    G +  +      +R+    L +D  
Sbjct: 59  TRDIDLVLHLPMRYEDETTLTPVRELLPGEIAQTEGVVFDNEIAYRPRRQLLVKLRDDSD 118

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + MVHP        + + PL +A
Sbjct: 119 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEMVHPTVKV---VEADAPLPQA 174

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  + +  L     P +A+A  ++H+P
Sbjct: 175 LTPVYPSTAGVSQAYLRKAIDNALTRTPLPELLPPEVARAHLAPLDVPPLADAVRLLHHP 234

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIAL 240
               D     + T PA  R+ +DELLA Q++L
Sbjct: 235 GVGADETALIDGTHPAWTRIKFDELLAQQLSL 266


>gi|224024842|ref|ZP_03643208.1| hypothetical protein BACCOPRO_01573 [Bacteroides coprophilus DSM
           18228]
 gi|224018077|gb|EEF76076.1| hypothetical protein BACCOPRO_01573 [Bacteroides coprophilus DSM
           18228]
          Length = 445

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 131/323 (40%), Gaps = 44/323 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    GSGKTL  L+ + ++++ G    QAV++ P   LA Q  +  K     T   V 
Sbjct: 40  ILLSPTGSGKTLAYLLPLVSSLKEGVDGVQAVVLVPSRELALQIEQVFK--AMGTGWNVM 97

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK-----LILVIVDEQHR--- 405
              G  P     + ++ I   +  +IIGT     D +         + L+++DE  +   
Sbjct: 98  SCYGGRPAMEEHRTMKGI---RPSVIIGTPGRMNDHLDKQNFDASTVRLLVIDEFDKCLE 154

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATP---IPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           FG Q+ +   + +        L++AT    IPR   L     +D     E+ + R  I  
Sbjct: 155 FGFQEEMAEVIGKLPALRRRFLLSATDTEEIPRFTGLNQTVKLDFLNPEEQVSERLHIYK 214

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER-FNSLHEHFTSSIA 519
           V  P     E + +L   L +     +           N R  V+R    LH       A
Sbjct: 215 VCSPAKDKLETLYKLLCSLGDASTLVF----------CNHRESVDRVMKYLHSQKVYCEA 264

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----A 574
             HG M   D+E  +  F+NG+C +LI+T +   G+D+ +     I N  H+ L      
Sbjct: 265 F-HGGMEQDDRERALYKFRNGSCHILISTDLAARGLDIPE-----IRNIVHYHLPVGEDG 318

Query: 575 QLHQLRGRVGRGEEISSCILLYH 597
            +H+  GR  R E   S  L+ H
Sbjct: 319 FIHR-NGRTARWEAEGSAYLILH 340


>gi|303251035|ref|ZP_07337221.1| primosome assembly protein PriA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252670|ref|ZP_07534562.1| Primosomal protein N' [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302650045|gb|EFL80215.1| primosome assembly protein PriA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859846|gb|EFM91867.1| Primosomal protein N' [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 732

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 170/422 (40%), Gaps = 105/422 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++ G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 218 LLNGVTGSGKTEVYLQVIEEVLKRGEQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 273

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
             NM +  R  A  R  +G++ I+IGT  ALF    Q+ KL L+I+DE+H          
Sbjct: 274 HSNMNETERLNAWLRAKNGESAIVIGTRSALFS---QFEKLGLIIIDEEHDSSFKQQDGW 330

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           R+  +    L  K     ++L +ATP   ++     G      +T +    +  K  +I 
Sbjct: 331 RYHARDLAILRAKNLHIPIILGSATPSLESVQNVQNGKFIELSLTARAGNAQQAKQQLID 390

Query: 465 I--NRI-----DEVIERLKVVLSEGKKAY------------------WIC-------PQI 492
           +   RI     D ++  +K  L +G +                    W+C       P  
Sbjct: 391 LKTQRITAGLSDRLLAMMKQHLEQGNQVMLFLNRRGFAPVLLCHECGWMCECDACEKPYT 450

Query: 493 EEKKESNFRS-------VVERFNSLHEHFTSSIAIIHG-----------------RMSDI 528
             +K+   R        V+ R      H  S+  I  G                 ++S I
Sbjct: 451 YHQKQKILRCHHCASQRVIPRQCG---HCGSTNLITTGVGTEQLEQVLSEQFPTYQISRI 507

Query: 529 DKESV---------MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF-------- 571
           D++S          ++  + G  ++LI T ++  G    + +++ I N +          
Sbjct: 508 DRDSTARKGALENHLNDIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTDFRA 567

Query: 572 --GLAQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL-IAEEDLKQ 627
              LAQL+ Q+ GR GR E+    +L  H P     +  L  L   E G+L  A+E LK 
Sbjct: 568 EERLAQLYVQVAGRAGRAEKQGEVVLQTHYP----EHPLLKTL--LEQGYLAFAQEALKM 621

Query: 628 RK 629
           RK
Sbjct: 622 RK 623


>gi|254172736|ref|ZP_04879410.1| cold-shock deAd box protein a [Thermococcus sp. AM4]
 gi|214032892|gb|EEB73720.1| cold-shock deAd box protein a [Thermococcus sp. AM4]
          Length = 392

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 139/341 (40%), Gaps = 56/341 (16%)

Query: 290 QKNRMLRILQGDV--------GSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHY 338
           Q+  + R+L+GDV        G+GKT    + +  A+   E   QA+I+ P   LA Q  
Sbjct: 28  QREVIPRLLEGDVDIIGQSQTGTGKTAAFALPIIEAIDPKEKTVQAIILTPTRELALQVA 87

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL- 397
           + IK      ++ V  I G  P   + +ALER      H+++GT     D +    L L 
Sbjct: 88  DEIKSLRGKKRVYVYAIYGGQPIGPQIRALER----GVHVVVGTPGRVLDHLNRGTLDLS 143

Query: 398 ----VIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                ++DE  R      V    ++ ++A     +LM +  +P  ++L +       K  
Sbjct: 144 SVRFFVLDEADRMLDMGFVDDIEEIMRRAPEEKRILMFSATMPMGILLLA------KKYM 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIE--------RLKVVLSEGKKAYWICPQIEEKKESNFR 501
             P      +  I+P     E +E        +LK VL EG      C    E +E + R
Sbjct: 198 RNPEVVLVSRDEIVPEMVDQEYVEVLPARKYEKLKEVLEEGFYGIIFCHTKRETRELSER 257

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              + F +           ++G MS   +E   + FK G   +L+AT V   G+DV + S
Sbjct: 258 LRRDGFRA---------DALNGDMSQAARERTFNRFKEGKINVLVATDVAARGLDVREIS 308

Query: 562 III----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +I      N E +    +H++ GR GR  +    I    P
Sbjct: 309 HVINYSLPMNPEQY----IHRI-GRTGRMGKRGKAITFLEP 344


>gi|254284073|ref|ZP_04959041.1| RNA helicase DbpA [gamma proteobacterium NOR51-B]
 gi|219680276|gb|EED36625.1| RNA helicase DbpA [gamma proteobacterium NOR51-B]
          Length = 474

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 143/321 (44%), Gaps = 35/321 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I++   GSGKT    + + A +     G QA +M P   LA Q  + I++  ++   I +
Sbjct: 58  IVRAKTGSGKTAAFALGLLATINPRFFGVQAFVMCPTRELADQVGKEIRRLASRMPNIKL 117

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
            ++ G +P   +R +L   +HG AHI++GT    +D ++   L +     +++DE  R  
Sbjct: 118 VLLCGGVPLGPQRDSL---SHG-AHIVVGTPGRIEDHLKRGSLNIESVKTLVLDEADRML 173

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             G    +K           +++  P  R TL+ ++    DI +I+ +   R P    + 
Sbjct: 174 DMGFADAIKQ----------IISGMPGDRQTLLFSATYPQDIQRIS-RSIQRNPASVTVD 222

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---S 517
            +   + VIE+L   +++ ++   +C   E  + +N   F +  ++ + +          
Sbjct: 223 DVAHNEAVIEQLFYEVNKHERQATLCALFEHYRPANAVVFCNTKKQCDEVAVFLRGQGIE 282

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              IHG +   +++ V+    N +C +L+AT V   G+D+ D  +++           +H
Sbjct: 283 ARAIHGDLEQRERDQVLLQLTNDSCPVLVATDVAARGLDIKDLEMVVNYELPRDPEVYVH 342

Query: 578 QLRGRVGRGEEISSCILLYHP 598
           ++ GR GR   +     +  P
Sbjct: 343 RI-GRTGRAGAVGKACSIVVP 362


>gi|242022822|ref|XP_002431837.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212517169|gb|EEB19099.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 630

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 139/322 (43%), Gaps = 43/322 (13%)

Query: 302 VGSGKTLVALIAMAAAVEA----------GGQAVIMAPIGILAQQHYEFIKKYT-QNTQI 350
            G+GKTL  L+     ++           G   +I+AP   LA Q    +KKY+ +N + 
Sbjct: 269 TGTGKTLAFLLPALIHIDGQKIPGTKPRGGPNVLIIAPTRELALQIENEVKKYSYKNIKC 328

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +     GN     RR+ +  +  G   III T     D +    + L     +++DE  R
Sbjct: 329 LCVYGGGN-----RREQINTVQEG-VEIIIATPGRLNDLVNNSYITLSSITYIVLDEADR 382

Query: 406 FGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI- 462
                   +      P +  LL+   P  ++++ ++    D+ ++ ++     PI+  I 
Sbjct: 383 --------MLDMGFEPQIRKLLLDIRPDRQSVMTSATWPNDVQRLAKRYMS-NPIQVFIG 433

Query: 463 -IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI- 520
            + +  +  V++R+ ++    KK+Y        K+E +   V     ++ +  +  +++ 
Sbjct: 434 SLDLTAVHSVLQRVYIINEGDKKSYLFDILRNLKEEEDKIIVFVGKKNMADDLSCDLSLN 493

Query: 521 ------IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 IHG    +D+E  +D FK G  K+LIAT V   GID+ D + ++  +  +    
Sbjct: 494 RFMCQCIHGGREQMDREQALDDFKTGCVKILIATDVASRGIDISDITKVLNYDFPNNIEE 553

Query: 575 QLHQLRGRVGRGEEISSCILLY 596
            +H++ GR GR  +    I  +
Sbjct: 554 YVHRV-GRTGRAGKTGEAITFF 574


>gi|281490952|ref|YP_003352932.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281374710|gb|ADA64230.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
           lactis subsp. lactis KF147]
          Length = 446

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 155/359 (43%), Gaps = 47/359 (13%)

Query: 263 QKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            + L NI F  PT+ QE+ I  +L       R L + +   GSGKT   L+ +   ++  
Sbjct: 13  NQTLENIKFEKPTEVQENLIPIVLS-----GRDL-VGESKTGSGKTHTFLLPIFQKIDTD 66

Query: 322 ---GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
               QAVI AP   LA Q Y+  +++T+ N ++ V    G   +A + K LE     Q H
Sbjct: 67  LDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLE---SSQPH 123

Query: 378 IIIGTHALFQDSIQYYKLIL-----VIVDEQH---RFGVQQRLKLTQKATAPHV-LLMTA 428
           ++IGT     D I    LI+      +VDE       G    +     +    V +L+ +
Sbjct: 124 VVIGTPGRIHDLINSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFS 183

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
             IP+ L         + K    P  +K     +I      + IE   +V ++G     +
Sbjct: 184 ATIPQKLQPF------LKKYLHNPVMQKIANKTVIS-----DTIENW-LVSTKGSSHNQL 231

Query: 489 CPQIEEKKESN------FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKN 539
             Q+   K +N      F +   R + +H   TS+   +A IHG +   +++ +M+S KN
Sbjct: 232 LLQLT--KATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKN 289

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              + ++AT +   GID+   S II +         +H++ GR GR     + I LY P
Sbjct: 290 LDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRV-GRSGRNGLQGTAITLYSP 347


>gi|227534475|ref|ZP_03964524.1| ATP-dependent RNA helicase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187874|gb|EEI67941.1| ATP-dependent RNA helicase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 448

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 154/371 (41%), Gaps = 37/371 (9%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M  QFK+    P  ++G  A  I      +PT  Q+  I  +L+  +       + Q   
Sbjct: 1   MENQFKQFQLKPFVIDGLNAMAIT-----APTPIQQKVIPALLRGENI------VGQSQT 49

Query: 303 GSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-VEIITGN 358
           GSGKT   LV L++M    E   Q VI AP   LA Q Y   ++  Q    I +  + G 
Sbjct: 50  GSGKTHAFLVPLLSMVDPTEDATQVVITAPSRELANQIYAVAQQLIQTEPAIRINRLVGG 109

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           M    ++K ++++ + Q H+ IGT     D I+ Y L+   V    R  V     +T   
Sbjct: 110 M---DKQKQIDKLQNHQPHVAIGTPGRILDMIKGYDLVPSSV----RHFVVDEADMTLDM 162

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIER 474
                +   A+  P  L +         K+  +P  RK    P    + P + I + +E 
Sbjct: 163 GFLETVDAIASSFPDHLQMAVFSATIPQKL--EPFLRKYMDNPTTIELKPQSVIADTVEN 220

Query: 475 LKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           + ++ ++G+    +  Q+            +N ++ V+  +   +H    +A IHG +  
Sbjct: 221 I-LIAAKGRDKNELIYQLVTMGHPFLVLIFANTKTSVDAIHDFLKHQGLKVAKIHGGIQP 279

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            ++  VM    +   + ++AT +   GID+   S++I           +H++ GR GR  
Sbjct: 280 RERRRVMKDVADLKYQYVVATDLAARGIDIKGVSMVINAEIPRDNEFFIHRV-GRTGRNG 338

Query: 588 EISSCILLYHP 598
              + + LY P
Sbjct: 339 MAGTAVTLYEP 349


>gi|167721135|ref|ZP_02404371.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei DM98]
          Length = 210

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 14/212 (6%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 2   TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 61

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +A
Sbjct: 62  AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 117

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+P
Sbjct: 118 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 177

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIAL 240
               D     + T PA  R+ +DELLA Q++L
Sbjct: 178 GVGADETALIDGTHPAWTRIKFDELLAQQLSL 209


>gi|182677533|ref|YP_001831679.1| primosome assembly protein PriA [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182633416|gb|ACB94190.1| primosomal protein N' [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 736

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 136/305 (44%), Gaps = 59/305 (19%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV------EGKIAQKILRNIPFS--- 272
           +PAR R+    L A    L+L RK+  K+     NV      EG +A  +L + P S   
Sbjct: 123 TPARHRV----LEALGDGLVLARKELAKKAACSPNVIDGLIDEGTLATTVLVDEPDSVRE 178

Query: 273 -----PT--KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
                PT    Q +A  ++   + ++   + +L+G  GSGKT V   A+A+A+E GG A+
Sbjct: 179 GISHGPTLEPDQAAAAVELTNQVRRQTFTVTLLEGVTGSGKTEVYFEAVASALETGGHAL 238

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH- 383
           I+ P I + AQ    F  ++ +      E  +   P+  R +    +A G+  +++G   
Sbjct: 239 ILLPEIALTAQFLDRFTTRFGERPG---EWHSAVGPR-RRARTWRAVAEGRIKVVVGARS 294

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQ--------------RLKLTQKATAPHVLLMTAT 429
           ALF   + +  L L++VDE+H    +Q              R +L++ A    V+L +AT
Sbjct: 295 ALF---LPFRDLRLIVVDEEHDSAYKQEDGVPYHARDMAVVRGQLSKSA----VILASAT 347

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P   T V    G     ++  +  GR      ++P       I+  K   S GK   WI 
Sbjct: 348 PSIETRVNAEQGRYGHLRLHARHGGR------VLPAL---SAIDLRKAGPSPGK---WIS 395

Query: 490 PQIEE 494
           P++ +
Sbjct: 396 PRLAQ 400


>gi|154245535|ref|YP_001416493.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154159620|gb|ABS66836.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 609

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 137/326 (42%), Gaps = 40/326 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +AMA  +             QA+++AP   LA Q   EF   Y  
Sbjct: 37  LVSAQTGSGKTVAYGLAMADTLLGTDERFGPATAPQALVVAPTRELALQVQREFEWLYAA 96

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILV 398
               IV  + G  P+  +R AL R     AH+++GT    +D ++  +L        +L 
Sbjct: 97  TGARIVSCVGGMDPRQEQR-ALSR----GAHMVVGTPGRLRDHLERGRLDISAVRVVVLD 151

Query: 399 IVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
             DE    G ++ L+    AT P    LL +AT +PR + +       ++K  ++ A R 
Sbjct: 152 EADEMLDLGFREDLQFILDATPPERRSLLFSAT-LPRGITM-------LAKRYQREALR- 202

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSLHE 512
            I+         D     ++VV  E + A     +  +   +    N R  V   ++  +
Sbjct: 203 -IEVASAEGGHADIEYRAMRVVPKEIEHAVVNVLRFYDAPSAIVFCNTRETVRHLHATLQ 261

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               S   + G +S  ++ S + + ++G  ++ +AT V   GID+    ++I  +  +  
Sbjct: 262 ERQFSAVALSGELSQNERNSALQALRDGRARVCVATDVAARGIDLPSLGLVIHADLPNDA 321

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
            +  H+  GR GR       +LL  P
Sbjct: 322 ESLQHR-SGRTGRAGRKGVSVLLVPP 346


>gi|148260838|ref|YP_001234965.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146402519|gb|ABQ31046.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
          Length = 574

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 151/366 (41%), Gaps = 44/366 (12%)

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           +P  VE    Q  L    ++   + +SA+   L+  ++   +L  +    GSGKT+   +
Sbjct: 4   MPFYVETPALQHALAARGYADPTAVQSAV---LEPEAEGRDLL--VSAQTGSGKTVAYGL 58

Query: 313 AMAAAV-------EAGGQ-AVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           A AA +        AG   A+I+AP   LA Q H E    Y      +V  + G  P+  
Sbjct: 59  AFAATILDEDVLPPAGAPLALIIAPTRELAIQVHAELAWLYEHTGASVVSCVGGMDPRRE 118

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLT 415
           +R     +A G  HI++GT    QD I+   L L     V++DE       G +  L+  
Sbjct: 119 QRA----LASG-CHIVVGTPGRLQDHIERRHLDLGRLRVVVLDEADEMLDLGFRDELEFI 173

Query: 416 QKATAP--HVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRKPIKTVIIPINRID 469
             A+      LL +AT       L      D  +I      +P      + + I  + ++
Sbjct: 174 LGASPADRRTLLFSATIAREIAALARQYQRDALRIDTVARNQPHADIEYRAIRIAAHEVE 233

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             +  L +   EG      C        S   SV + +  L E   +++A+  G +S  +
Sbjct: 234 HGLVNL-LRFHEGAGCLVFC--------STRESVRQLYGRLQERGFAAVAL-SGELSQSE 283

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           + + + S ++G  ++ IAT V   G+D+ +  ++I  +        LH+  GR GR    
Sbjct: 284 RNAALQSLRDGRARVCIATDVAARGLDLPNLDLVIHADLPANKATLLHR-SGRTGRAGRK 342

Query: 590 SSCILL 595
             C+L+
Sbjct: 343 GLCLLM 348


>gi|15672392|ref|NP_266566.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723284|gb|AAK04508.1|AE006277_8 ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326405986|gb|ADZ63057.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 446

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 156/363 (42%), Gaps = 55/363 (15%)

Query: 263 QKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            + L NI F  PT+ QE  I  +L       R L + +   GSGKT   L+ +   ++  
Sbjct: 13  NQTLENIKFEKPTEVQEKLIPIVLS-----GRDL-VGESKTGSGKTHTFLLPIFQKIDTD 66

Query: 322 ---GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
               QAVI AP   LA Q Y+  +++T+ N ++ V    G   +A + K LE     Q H
Sbjct: 67  LDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLE---SSQPH 123

Query: 378 IIIGTHALFQDSIQYYKLIL-----VIVDEQH---RFGVQQRLKLTQKATAPHV-LLMTA 428
           ++IGT     D I+   LI+      +VDE       G    +     +    V +L+ +
Sbjct: 124 VVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFS 183

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGKK 484
             IP+ L               +P  +K    P+   I     I + IE   +V ++G  
Sbjct: 184 ATIPQKL---------------QPFLKKYLHNPVMQKIANKTVISDTIENW-LVSTKGSS 227

Query: 485 AYWICPQIEEKKESN------FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
              +  Q+   K +N      F +   R + +H   TS+   +A IHG +   +++ +M+
Sbjct: 228 HNQLLLQLT--KATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMN 285

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           S KN   + ++AT +   GID+   S II +         +H++ GR GR     + I L
Sbjct: 286 SIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRV-GRSGRNGLQGTAITL 344

Query: 596 YHP 598
           Y P
Sbjct: 345 YSP 347


>gi|32033953|ref|ZP_00134209.1| COG1198: Primosomal protein N' (replication factor Y) - superfamily
           II helicase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126208506|ref|YP_001053731.1| primosome assembly protein PriA [Actinobacillus pleuropneumoniae
           L20]
 gi|126097298|gb|ABN74126.1| primosomal protein N' [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 738

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 170/422 (40%), Gaps = 105/422 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++ G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 224 LLNGVTGSGKTEVYLQVIEEVLKRGEQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 279

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
             NM +  R  A  R  +G++ I+IGT  ALF    Q+ KL L+I+DE+H          
Sbjct: 280 HSNMNETERLNAWLRAKNGESAIVIGTRSALFS---QFEKLGLIIIDEEHDSSFKQQDGW 336

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           R+  +    L  K     ++L +ATP   ++     G      +T +    +  K  +I 
Sbjct: 337 RYHARDLAILRAKNLHIPIILGSATPSLESVQNVQNGKFIELSLTARAGNAQQAKQQLID 396

Query: 465 I--NRI-----DEVIERLKVVLSEGKKAY------------------WIC-------PQI 492
           +   RI     D ++  +K  L +G +                    W+C       P  
Sbjct: 397 LKTQRITAGLSDRLLAMMKRHLEQGNQVVLFLNRRGFAPVLLCHECGWMCECDACEKPYT 456

Query: 493 EEKKESNFRS-------VVERFNSLHEHFTSSIAIIHG-----------------RMSDI 528
             +K+   R        V+ R      H  S+  I  G                 ++S I
Sbjct: 457 YHQKQKILRCHHCASQRVIPRQCG---HCGSTNLITTGVGTEQLEQVLSEQFPTYQISRI 513

Query: 529 DKESV---------MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF-------- 571
           D++S          ++  + G  ++LI T ++  G    + +++ I N +          
Sbjct: 514 DRDSTARKGALENHLNDIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTDFRA 573

Query: 572 --GLAQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL-IAEEDLKQ 627
              LAQL+ Q+ GR GR E+    +L  H P     +  L  L   E G+L  A+E LK 
Sbjct: 574 EERLAQLYVQVAGRAGRAEKQGEVVLQTHYP----EHPLLKTL--LEQGYLAFAQEALKM 627

Query: 628 RK 629
           RK
Sbjct: 628 RK 629


>gi|198277297|ref|ZP_03209828.1| hypothetical protein BACPLE_03509 [Bacteroides plebeius DSM 17135]
 gi|198269795|gb|EDY94065.1| hypothetical protein BACPLE_03509 [Bacteroides plebeius DSM 17135]
          Length = 438

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 136/354 (38%), Gaps = 43/354 (12%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q IL N+      + + A  D  ++ S       IL    GSGKTL  L+ + ++++ G 
Sbjct: 4   QTILSNLKIDQLNAMQEASIDAWKEGSD-----LILLSPTGSGKTLAYLLPLVSSLKKGV 58

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              QAV++ P   LA Q  +  K     T   V    G  P     + ++ I+     +I
Sbjct: 59  EGVQAVVLVPSRELALQIEQVFKAMA--TGFPVMSCYGGRPAMEEHRTMKGISPA---VI 113

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT 429
           IGT     D +            L++   D+   FG Q  +   + +        L++AT
Sbjct: 114 IGTPGRMNDHLNKQNFEAGTVRTLVIDEFDKCLEFGFQDEMAEVIGKLPALRRRFLLSAT 173

Query: 430 P---IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
               IPR   +     +D     E  + R  +  V  P+    E + +L   L   +   
Sbjct: 174 DAEEIPRFTGMNRTLKLDFLNPEETVSQRLSVYRVTSPVKDKLETLYKLLCTLGN-ESTL 232

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C         N R  V+R               HG M   D+E  +  F+NG+C + I
Sbjct: 233 VFC---------NHRESVDRVGKYLHSMKVYCETFHGGMEQDDRERALYKFRNGSCHIFI 283

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQ---LHQLRGRVGRGEEISSCILLYH 597
           +T +   G+D+ D   ++     H  +A+   +H+  GR  R E   +  L+ H
Sbjct: 284 STDLAARGLDIPDIRHVV---HYHLPVAEDGFIHR-NGRTARWEAEGNAFLILH 333


>gi|167920401|ref|ZP_02507492.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei BCC215]
          Length = 232

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 14/212 (6%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 13  TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 72

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +A
Sbjct: 73  AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 128

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+P
Sbjct: 129 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 188

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIAL 240
               D     + T PA  R+ +DELLA Q++L
Sbjct: 189 GVGADETALIDGTHPAWTRIKFDELLAQQLSL 220


>gi|265763381|ref|ZP_06091949.1| ATP-independent RNA helicase [Bacteroides sp. 2_1_16]
 gi|263255989|gb|EEZ27335.1| ATP-independent RNA helicase [Bacteroides sp. 2_1_16]
          Length = 443

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 131/332 (39%), Gaps = 47/332 (14%)

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ 346
            K R   IL    GSGKTL  L+ +  +++A   G QAV++ P   LA Q  +  K    
Sbjct: 32  DKGREDLILLSPTGSGKTLAFLLPLVGSLKADVKGVQAVVLVPSRELALQIEQVFK--AM 89

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVD 401
            T+       G  P     + ++ +   Q  +IIGT     D     +     + L+++D
Sbjct: 90  GTEFKAMSCYGGRPAMEEHRTMKGM---QPAVIIGTPGRMNDHLSKQNFDASTVSLLVID 146

Query: 402 EQHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLG-----DIDISKITEK 451
           E  +   FG Q+ +   + Q        L +AT        T L      D   + + E 
Sbjct: 147 EFDKCLEFGFQEEMATVIGQLPDLKRRFLTSATDAEEIPQFTGLNRTIKLDFLTNDVEE- 205

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
              R  +  V+ P     E + +L   L       +           N R  V+R ++L 
Sbjct: 206 --SRLRLMKVVSPAKDKIETLYKLLCTLGSSSSIVF----------CNHRDAVDRVSALL 253

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                S    HG M   D+E  +  F+NG+C +L++T +   G+D+ +   II     H+
Sbjct: 254 TEKGVSNERFHGGMEQPDRERALYKFRNGSCPVLVSTDLAARGLDIPEVEHII-----HY 308

Query: 572 GL-----AQLHQLRGRVGRGEEISSCILLYHP 598
            L     A  H+  GR  R +   +  L+ +P
Sbjct: 309 HLPVNEEAFTHR-NGRTARWDATGTSYLILNP 339


>gi|16331758|ref|NP_442486.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803]
 gi|1001719|dbj|BAA10556.1| ATP-dependent RNA helicase; DeaD [Synechocystis sp. PCC 6803]
          Length = 492

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 156/363 (42%), Gaps = 59/363 (16%)

Query: 264 KILRNIPF-SPTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           ++L +I F +PT+ Q  AI  +L  +DM        + Q   G+GKT    + +   ++ 
Sbjct: 20  QLLADIGFEAPTQIQTEAIPLLLSGRDM--------LAQSQTGTGKTAAFALPLMDRIDP 71

Query: 321 GG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            G  QA+I+ P   LAQQ  E +K ++   ++ +  + G      + ++LER       I
Sbjct: 72  EGDLQALILTPTRELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIRSLER----GVQI 127

Query: 379 IIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTA 428
           ++GT     D I   KL L     V++DE       G    +K   + T P       +A
Sbjct: 128 VVGTPGRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDVKTILRKTPPTRQTACFSA 187

Query: 429 TPIPRT---LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           T +PR    LV   L D  +  +T K     P +           + ++L  V     KA
Sbjct: 188 T-MPREIKELVNQFLNDPAL--VTVKQTQSTPTR-----------IEQQLYHVPRGWSKA 233

Query: 486 YWICPQIE-EKKESNF-----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             + P +E E  ES       +       S  +    S+   HG +S   +E ++  F++
Sbjct: 234 KALQPILEMEDPESAIIFVRTKQTAADLTSRLQEAGHSVDEYHGNLSQSQRERLVHRFRD 293

Query: 540 GTCKLLIATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           G  KL++AT +   G+DV + S ++     +NAE +    +H++ GR GR  +    I L
Sbjct: 294 GKIKLVVATDIAARGLDVNNLSHVVNFDLPDNAETY----IHRI-GRTGRAGKTGKAIAL 348

Query: 596 YHP 598
             P
Sbjct: 349 VEP 351


>gi|34498308|ref|NP_902523.1| ATP-dependent RNA helicase DbpA [Chromobacterium violaceum ATCC
           12472]
 gi|34104162|gb|AAQ60521.1| ATP-dependent RNA helicase dbpA [Chromobacterium violaceum ATCC
           12472]
          Length = 460

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 136/307 (44%), Gaps = 28/307 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   GSGKT    + + +++     G QA++M P   LA Q  + I++  +    I V
Sbjct: 45  IAQAKTGSGKTAAFGLGLLSSINPRWFGVQALVMCPTRELADQVAQEIRRLARAIDNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRFG 407
             +TG  P   +  +LE   HG AHI++GT       LF++++    +  +++DE  R  
Sbjct: 105 VTLTGGTPMGPQIGSLE---HG-AHIVVGTPGRLQDHLFRETLNLTGVKTLVLDEADRM- 159

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 +        V ++ A P  R TL+ ++    DI K + +   + P++  +  ++
Sbjct: 160 ------IDMGFIEEIVGIVRACPRTRQTLLFSATYPEDIRKASAQFL-KNPVEVKVESLH 212

Query: 467 RIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAII 521
           + D + +    V  E +      I   +       F +  ER   L             +
Sbjct: 213 KADHIEQWFYKVKPETRLETVSRILRHLRPTSALAFCNTRERCKELVRELQEQGFHALTL 272

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG +   +++ ++  F N +  +L+AT V   G+D+ +  ++I  +  H     +H++ G
Sbjct: 273 HGDLEQRERDQILLRFANKSATVLVATDVAARGLDIKELDVVINVDVTHDPEVHIHRI-G 331

Query: 582 RVGRGEE 588
           R GRGE+
Sbjct: 332 RTGRGEQ 338


>gi|309364881|emb|CAP23459.2| hypothetical protein CBG_03203 [Caenorhabditis briggsae AF16]
          Length = 1095

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 169/391 (43%), Gaps = 82/391 (20%)

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
            PT+ QE+A+  +L  M   + +  I Q   G+GKT   ++ M   ++      Q + +AP
Sbjct: 714  PTRIQETALPLLL--MEPPSNL--IAQAQSGTGKTAAFVLTMLCRIDINLKCPQCICLAP 769

Query: 330  IGILAQQHYEFIKK---YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
               LA+Q  E ++K   Y +N +I   I  GNM     RK  E+I       +IGT  + 
Sbjct: 770  TLELAKQIGEVVEKMGRYMENLKIHYAIKGGNMAAMRGRKLTEQI-------VIGTPGIT 822

Query: 387  QDSIQYYKLI------LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            +D +Q YK I       +++DE       Q    T  +T  + ++  A+   ++++ ++ 
Sbjct: 823  RDYLQKYKCIDPSQIRCLVLDEADVMIYHQ--GFTDISTTIYNMVEEASDSVQSMLFSAT 880

Query: 441  GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
             D  +     K           I  N I  +++R +  L   K+ +  C      ++S +
Sbjct: 881  YDEPVINFATK-----------IIKNAIVVMLKREEQALPNIKQFFVQC----ACRDSKY 925

Query: 501  RSVVERFNS------------------LHEHFTS---SIAIIHGRMSDIDKESVMDSFKN 539
             ++V  ++                   L+E+  +    + ++HG MS +++   +  FK 
Sbjct: 926  AAIVNLYSGLAVASSVIFCHTKASVMWLYENMKARGHKVDVLHGDMSVVERADTIIRFKR 985

Query: 540  GTCKLLIATTVIEVGIDVVDASIII-----IENAEH------FGLAQ------LHQLRGR 582
            G  K+LI T V   GIDV   S++I     I+  EH       G  Q      LH++ GR
Sbjct: 986  GDFKVLITTNVFARGIDVAQVSVVINYDLPIKYNEHDSPMVIDGFTQPDCETYLHRI-GR 1044

Query: 583  VGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
             GR  +    I L     S++S   ++VL+N
Sbjct: 1045 TGRFGKTGIAINLID---SEDSMNMINVLEN 1072


>gi|254566967|ref|XP_002490594.1| Nucleolar protein required for maturation of 18S rRNA [Pichia
           pastoris GS115]
 gi|238030390|emb|CAY68313.1| Nucleolar protein required for maturation of 18S rRNA [Pichia
           pastoris GS115]
 gi|328350981|emb|CCA37381.1| DEAD-box protein, putative RNA helicase similar to S. cerevisiae
           FAL1 (YDR021W) involved in rRNA processing [Pichia
           pastoris CBS 7435]
          Length = 396

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 151/370 (40%), Gaps = 56/370 (15%)

Query: 246 QFKKEIGIPINV---EGKIAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRIL 298
           +FK   G+P+     E  + + +LR I      +P+  Q  AI  IL           I 
Sbjct: 12  KFKTTKGVPVVASFEEMNLKEDLLRGIYGYGFEAPSAIQSRAIMQILTGKDT------IA 65

Query: 299 QGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   G+GKT    I M   V+      QA++++P   LA Q    I+       I     
Sbjct: 66  QAQSGTGKTATFSIGMLNVVDTKKKDTQAIVLSPTRELAVQINNVIQNLGDYMNIHTYAC 125

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFG 407
            G        K L++   GQ HI+ GT     D I+   L        +L   DE    G
Sbjct: 126 IGGTSVGEDLKKLQK---GQ-HIVSGTPGRVCDMIKRRNLNVRNVKMLVLDEADELMTKG 181

Query: 408 VQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            Q+++    K   P   V++++AT     LV+T+       K    P        V I +
Sbjct: 182 FQEQIYDIYKTLPPSTQVVVVSATLTKEVLVMTN-------KFMNDP--------VKILV 226

Query: 466 NRIDEVIERLKVVLSEGKKAYW----ICPQIEEKKESN---FRSVVERFNSLHEHFTS-- 516
            R +  +E ++    + +K  W    +C   +    +    F +  ++ + L EH     
Sbjct: 227 KRDEVSLEGIRQFYIQCEKEEWKFDTLCDLYDSLTVTQAVIFCNTKKKVDWLTEHLRKAN 286

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            ++  +HG M   D++ +M+ F+ G  ++LI+T V   GIDV   S++I  +        
Sbjct: 287 FTVVSMHGDMKQEDRDRIMNEFRLGNSRVLISTDVWARGIDVQQVSLVINYDIPFAKENY 346

Query: 576 LHQLRGRVGR 585
           +H++ GR GR
Sbjct: 347 IHRI-GRSGR 355


>gi|167904187|ref|ZP_02491392.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei NCTC
           13177]
          Length = 233

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 14/212 (6%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +  +      +R+    L +D  
Sbjct: 13  TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFDNEIAYRPRRQLLVKLRDDDG 72

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + +VHP      + D + PL +A
Sbjct: 73  AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEIVHPTV---KTVDEDAPLPQA 128

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  I +  LQ    P +A+A  ++H+P
Sbjct: 129 LTPVYPSTAGVSQAYLRKAIDNALARTPLPELLPPEIARAYLQPLDVPPLADAVRMLHHP 188

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIAL 240
               D     + T PA  R+ +DELLA Q++L
Sbjct: 189 GVGADETALIDGTHPAWTRIKFDELLAQQLSL 220


>gi|254504723|ref|ZP_05116874.1| DbpA RNA binding domain family [Labrenzia alexandrii DFL-11]
 gi|222440794|gb|EEE47473.1| DbpA RNA binding domain family [Labrenzia alexandrii DFL-11]
          Length = 722

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 143/335 (42%), Gaps = 64/335 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV----EAGGQ-----AVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A+ +    E  G+     A+ +AP   LA Q   E    Y +
Sbjct: 64  LVSAQTGSGKTVAFGLALASTILGEEETLGKPGAPIALAIAPTRELALQVKEELTWLYGE 123

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVD 401
              +    + G  P+  RR  L+R      HI++GT    +D I+   L L     V++D
Sbjct: 124 AGAVTASCVGGMDPRMERR-TLDR----GVHIVVGTPGRLRDHIERGALDLSELRAVVLD 178

Query: 402 EQHRF---GVQQRLKLTQKATAPH---VLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
           E       G ++ L+    A AP     L+ +AT +P+ +        +++K  +K A R
Sbjct: 179 EADEMLDMGFREDLEFILDA-APENRRTLMFSAT-VPKPIA-------ELAKRFQKDAVR 229

Query: 456 KPIKTV---------------IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
             + T+               + P  R + +I  L+  L E +KA   C           
Sbjct: 230 --LSTINAREQHVDIDYIAHPVAPNERENAIINVLR--LHEAEKAIVFC---------QT 276

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           R  V R  +   +    I  + G +S   + + + + KNGT ++ +AT V   GID+ + 
Sbjct: 277 REGVSRLTARLANRGFRIVSLSGELSQEQRTAALTAMKNGTARVCVATDVAARGIDLPNL 336

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            ++I  +      A LH+  GR GR     +C+L+
Sbjct: 337 DLVIHADLPTGKAALLHR-SGRTGRAGRKGTCVLM 370


>gi|114563615|ref|YP_751128.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334908|gb|ABI72290.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 451

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 131/324 (40%), Gaps = 45/324 (13%)

Query: 302 VGSGKTLVAL-------IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L       I+  A  +   + +I+ P   LAQQ Y  ++    NTQ     
Sbjct: 47  TGSGKTLAFLLPAMQRVISTRALSKKDPRVLILLPTRELAQQVYGQLRLLVANTQYKAIS 106

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---F 406
           + G      + KAL R      H I+ T     D +Q   L L     +++DE  R    
Sbjct: 107 VLGGENFNDQAKALAR----DPHFIVATPGRIADHLQQRHLYLNGLELLVLDEADRMLDL 162

Query: 407 GVQQRLKLTQKATAPH----VLLMTATPIPRTLVLTSLGDIDIS--------KITEKPAG 454
           G   +LK    A A H     L+ +AT     L   S+GDI  +         I E    
Sbjct: 163 GFAPQLKAINDA-ADHKRRQTLMFSAT-----LDHNSIGDIATTLLKSPSHVSIGESYTE 216

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            K I+  II ++ +D     L+ +LS+      I         +  RS  +R  +L    
Sbjct: 217 HKDIEQRIILVDHLDHKQAVLQHILSQETHKQVIV-------FTATRSDTDRLATLLAAQ 269

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + + + G +    +  +MD F  G  ++L+ T V   G+D+++ S++I  +   F   
Sbjct: 270 GFATSALSGDLKQSARNQIMDQFARGQSQILVTTDVASRGLDLINVSLVINFDMPKFAEE 329

Query: 575 QLHQLRGRVGRGEEISSCILLYHP 598
            +H++ GR GR       +    P
Sbjct: 330 YVHRI-GRTGRAGAKGDAVSFVGP 352


>gi|332879225|ref|ZP_08446923.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682883|gb|EGJ55782.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 440

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 130/322 (40%), Gaps = 41/322 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           +L    GSGKT+  L+ +  +++     QAV++ P   LA Q  +  K  +  T I V  
Sbjct: 36  VLLSPTGSGKTIAYLLPLVQSLKNENVLQAVVLVPSRELALQIEQVFK--SMGTGIPVMS 93

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF 406
             G  P     + ++ +      +IIGT     D +          + L++   D+    
Sbjct: 94  CYGGRPAMDEHRTMKSL---NPQVIIGTPGRMNDHLNKGNIDASHVHTLVIDEFDKCLEM 150

Query: 407 GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGD---IDISKITEKPAGRKPIKTV 461
           G Q+ +   + Q        L++AT  P      S GD   ++  +  E+   R  + TV
Sbjct: 151 GFQEEMSEVIAQIPYLKRRFLLSATDAPAIPRFVSEGDFLKLNFLEDEEQIPERIKVYTV 210

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
             P     EV+ +L   L +     ++          N+R  VER          S  + 
Sbjct: 211 KSPEKDKLEVLSKLLCYLGDKSSLVFV----------NYRESVERVYRYLLQEGISCEMF 260

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQL 576
           HG M   D+E  +  F NG+C + ++T +   G+D+ +     I++  H+ L     A +
Sbjct: 261 HGGMEQKDRERALYKFSNGSCNVFVSTDLAARGLDIPN-----IDHVIHYHLPLNEDAYI 315

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           H+  GR  R +   +  L+  P
Sbjct: 316 HR-NGRTARWDASGNVFLILGP 336


>gi|17536099|ref|NP_495893.1| DEAD boX helicase homolog family member (ddx-19) [Caenorhabditis
           elegans]
 gi|3879544|emb|CAA90407.1| C. elegans protein T07D4.4c, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 613

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 141/325 (43%), Gaps = 61/325 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT+ QE+A+  +L  M   + +  I Q   G+GKT   ++ M   ++      Q + +AP
Sbjct: 232 PTRIQETALPLLL--MEPPSNL--IAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAP 287

Query: 330 IGILAQQHYEFIKK---YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA+Q  E ++K   +  N +I   I  GNM     RK  E+I       +IGT  + 
Sbjct: 288 TLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTEQI-------VIGTPGIT 340

Query: 387 QDSIQYYKLI------LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           +D +Q YK I       +++DE       Q    T  +T  + ++  A+   ++++ ++ 
Sbjct: 341 RDYLQKYKCIDPSKIRCLVLDEADVMIYHQ--GFTDISTTIYNMVEDASDSVQSMLFSAT 398

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D  +     K           I  N I  +++R +  L   K+ Y  C      ++S +
Sbjct: 399 YDEPVINFATK-----------IIKNAIVVMLKREEQALPNIKQFYVQC----ACRDSKY 443

Query: 501 RSVVERFNSL------------------HEHFTS---SIAIIHGRMSDIDKESVMDSFKN 539
            ++V  ++ L                  +E+  +    + ++HG M+ +++   +  FK 
Sbjct: 444 AAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKR 503

Query: 540 GTCKLLIATTVIEVGIDVVDASIII 564
           G  K+LI T V   GIDV   S++I
Sbjct: 504 GDFKVLITTNVFARGIDVAQVSVVI 528


>gi|291518338|emb|CBK73559.1| Transcription-repair coupling factor (superfamily II helicase)
           [Butyrivibrio fibrisolvens 16/4]
          Length = 723

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 41/71 (57%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P+  T+ Q SAI  +  DM     M R++ GDVG GKT VA+ A   AV+ G Q   +
Sbjct: 621 SFPYEETEGQLSAIDAVKSDMESSKIMDRLICGDVGFGKTEVAMRAAFKAVQEGKQVAYL 680

Query: 328 APIGILAQQHY 338
            P  ILAQQHY
Sbjct: 681 VPTTILAQQHY 691


>gi|215414947|emb|CAT01054.1| C. elegans protein T07D4.4d, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 607

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 139/325 (42%), Gaps = 61/325 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT+ QE+A+  +L +         I Q   G+GKT   ++ M   ++      Q + +AP
Sbjct: 226 PTRIQETALPLLLMEPPSN----LIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAP 281

Query: 330 IGILAQQHYEFIKK---YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA+Q  E ++K   +  N +I   I  GNM     RK  E+I       +IGT  + 
Sbjct: 282 TLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTEQI-------VIGTPGIT 334

Query: 387 QDSIQYYKLI------LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           +D +Q YK I       +++DE       Q    T  +T  + ++  A+   ++++ ++ 
Sbjct: 335 RDYLQKYKCIDPSKIRCLVLDEADVMIYHQ--GFTDISTTIYNMVEDASDSVQSMLFSAT 392

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D  +     K           I  N I  +++R +  L   K+ Y  C      ++S +
Sbjct: 393 YDEPVINFATK-----------IIKNAIVVMLKREEQALPNIKQFYVQC----ACRDSKY 437

Query: 501 RSVVERFNSL------------------HEHFTS---SIAIIHGRMSDIDKESVMDSFKN 539
            ++V  ++ L                  +E+  +    + ++HG M+ +++   +  FK 
Sbjct: 438 AAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKR 497

Query: 540 GTCKLLIATTVIEVGIDVVDASIII 564
           G  K+LI T V   GIDV   S++I
Sbjct: 498 GDFKVLITTNVFARGIDVAQVSVVI 522


>gi|114763012|ref|ZP_01442442.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Pelagibaca bermudensis HTCC2601]
 gi|114544336|gb|EAU47344.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. HTCC2601]
          Length = 727

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 140/342 (40%), Gaps = 40/342 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--EAG--GQA-----VIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A  +  EAG  G+A     +I+AP   LA Q   E    Y +
Sbjct: 35  LVSAQTGSGKTVGFGLAIAPTLLDEAGMLGEASLPLALIVAPTRELAFQVKRELEWLYAK 94

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILV 398
               +V  + G M     R+ALER     AHI++GT     D IQ           ++L 
Sbjct: 95  AGARVVSCV-GGMDMRDERRALER----GAHIVVGTPGRLVDHIQRGSFDMSALRAIVLD 149

Query: 399 IVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
             DE    G ++ L+  L +       LL +AT  P    L  L   D  ++T       
Sbjct: 150 EADEMLDLGFREDLEFMLGEAPEERRTLLFSATVPPMIATLAQLYQRDAVRVT------- 202

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSLHE 512
              T+       D   + L+V   + + A     +  + + +    N R+ V R  +   
Sbjct: 203 ---TISERSQHADITYQALRVAQHDAENAIINMLRYHDAQNAIVFANTRATVNRLTARFS 259

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++   + + ++G  K+ +AT V   GID+ +  ++I        
Sbjct: 260 NRGFAVVCLSGELSQTERSHALQAMRDGRAKVCVATDVAARGIDLPNLELVIHAELPSNT 319

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
              LH+  GR GR        L+  P L+K +   L   K T
Sbjct: 320 EGLLHRS-GRTGRAGRKGISALVVPPKLTKKAERLLKWAKVT 360


>gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281207|gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 513

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 123/292 (42%), Gaps = 37/292 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  + +K Y+++T +   ++ G +  A +  AL         I+I T
Sbjct: 114 RALILTPTRELADQVADNVKAYSRHTPLRSVVVFGGVDMAPQTAAL----RSGVEIVIAT 169

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATP 430
                D IQ   L L     +++DE  R         +Q+ + L  K     +   T +P
Sbjct: 170 PGRLLDHIQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQRQNLMFSATFSP 229

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + L  T L D              P+   +   N   E + ++   + EG K   +  
Sbjct: 230 EIKKLAATFLKD--------------PVTIEVARSNATAENVTQIVYKVEEGDKGDAVSY 275

Query: 491 QIEEK--KE----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            I E+  K+    SN +    R     E+     + IHG  S  ++ + +++FKNGT ++
Sbjct: 276 IIRERGLKQVIVFSNTKIGASRLARQLENEGVKASAIHGDKSQAERMAALEAFKNGTIEV 335

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           L+AT V   G+D+ +   +I  +  +     +H++ GR GR       I LY
Sbjct: 336 LVATDVAARGLDIAELPCVINYDLPYNAEDYVHRI-GRTGRAGASGDAISLY 386


>gi|319404344|emb|CBI77941.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498]
          Length = 466

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 141/340 (41%), Gaps = 47/340 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q   I  ILQ    K  +L I Q   G+GKT   ++ M   +E G       + +I
Sbjct: 29  PTPIQSRTIPHILQ----KKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARIPRTLI 82

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   KY  N  + V ++ G +   H+ + LER     A ++I T    
Sbjct: 83  LEPTRELAAQVKENFDKYGVNHNLNVALLIGGVSFEHQDRKLER----GADVLIATPGRL 138

Query: 387 QDSIQYYKLILV-----IVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRT 434
            D  +  KL+LV     ++DE  R         V++  K+T        L  +AT  P  
Sbjct: 139 LDHFERGKLLLVGVEILVIDEADRMLNMGFIPDVERICKVT--PFTRQTLFFSATMAPEI 196

Query: 435 LVLTS--LGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEG---KKAYW 487
             LT   L      +ITE  +  K I   ++       D+     +++ +EG   K A  
Sbjct: 197 AQLTKQFLHSPVYIEITEASSTAKTITQRLVKSGSKSCDKKAVLKELIQNEGDELKNAII 256

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C        +  + + E F  L +H   S+  +HG M    + + + SFKN    LLIA
Sbjct: 257 FC--------NRKKDISELFQYLIKH-NFSVGTLHGDMDQHSRTNTLASFKNNKFILLIA 307

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
           + V   G+D+   S +   +        +H++ GR GR +
Sbjct: 308 SDVAARGLDIPAVSHVFNYDVPTHAEDYIHRI-GRTGRAK 346


>gi|212528762|ref|XP_002144538.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
 gi|210073936|gb|EEA28023.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
          Length = 452

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 141/332 (42%), Gaps = 55/332 (16%)

Query: 300 GDVGSGKTLV-ALIAMAAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   L  +   V++  +       AVI+ P   LA Q YE ++ Y     + 
Sbjct: 131 AETGSGKTLAFGLPCVKNMVDSKKKLKPSHPRAVILTPTRELAMQIYEQLEGYAPRVSVR 190

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
           V  I G + +  +R+AL+  A     I++ T    +D     +I   K+  +++DE  R 
Sbjct: 191 VTCIFGGVRKDEQREALKDTA-----IVVATPGRLKDLESEGAINLSKVKYLVLDEADRM 245

Query: 407 ---GVQQRLK-------LTQKATA------PHVLLMTATPIPRTLVLTSLGDIDISKITE 450
              G +Q +K       ++++ TA      P  +   A    +  V+ ++G     K +E
Sbjct: 246 LDKGFEQDIKDIVAPMPVSRRQTAMFTATWPVSVRNLANSFTQDPVMVTVG----GKPSE 301

Query: 451 KPAGRKPIKTVIIPI------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            P     IK V+  +      NR+ +++ +L    S+GK   +            ++   
Sbjct: 302 DPRANTRIKQVVEVLDGRDKENRLTQILAKLTRESSQGKILVFCL----------YKKEA 351

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            R   L +    ++A IHG +S  D+   + SFK+G   +L+AT V   G+D+     ++
Sbjct: 352 MRIERLIQSRGYAVAGIHGDLSQSDRFKSLASFKSGAVPILVATDVAARGLDIPAVKTVV 411

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
                      +H++ GR GR       I L+
Sbjct: 412 NVTFPLTIEDYVHRI-GRTGRAGADGHAITLF 442


>gi|257437800|ref|ZP_05613555.1| ATP-dependent RNA helicase DeaD [Faecalibacterium prausnitzii
           A2-165]
 gi|257199723|gb|EEU98007.1| ATP-dependent RNA helicase DeaD [Faecalibacterium prausnitzii
           A2-165]
          Length = 395

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 150/340 (44%), Gaps = 39/340 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I +   G+GKT    I +A  ++      QAVIMAP   LAQQ  E + + T    ++ V
Sbjct: 42  IAKAPTGTGKTCAFGIPVAEHIDPEKKYPQAVIMAPTRELAQQIAEELTELTYFMPEVQV 101

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQH 404
             + G    A+  K   R+A G   I++ T     D  +++ + L  V        DE  
Sbjct: 102 ACVYGG---ANMEKQARRLAEG-CQIVVATPGRLMDHYKHHSIDLAHVTQVVLDEADEML 157

Query: 405 RFGVQQRLK-LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKP--AGRKPIKT 460
             G  + ++ + +   A   L M +  I R ++ +  L   +  +IT +P    +  I  
Sbjct: 158 NMGFYKDVRHIIELMKARKSLSMFSATISREVMDIGWLYQNNAEEITVQPREESQPKITQ 217

Query: 461 VIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            ++  +  +++ +  ++++ EG K+    C       ++ F +     N L      S+ 
Sbjct: 218 YMLETSGRNKLSDLAQIIIGEGYKRVMVFC-------DTKFNTAT-LANQL-ARLGFSVD 268

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA----EHFGLAQ 575
            +HG +S  ++  +M +F++G   +L+AT V   GIDV D   +I  +     EH+    
Sbjct: 269 CLHGDLSQKERNQIMQNFRDGRLAILVATDVAARGIDVSDVDAVINYDVPGDNEHY---- 324

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
            H++ GR GR ++     L Y P   K     L + +NT+
Sbjct: 325 THRI-GRTGRAKKEGVSYLFYVPEEKKRVQELLRLTRNTD 363


>gi|85057334|ref|YP_456250.1| superfamily II DNA/RNA helicase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789439|gb|ABC65171.1| superfamily II DNA and RNA helicase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 547

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 134/311 (43%), Gaps = 39/311 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   G+GKT    I +   +       Q++I+ P   L  Q YE +KK  +  Q I +
Sbjct: 44  IGQAQTGTGKTFAFGIPIIEKINPKIQKTQSLILCPTRELTLQVYEELKKLLRFYQEIRI 103

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQH 404
            ++ G      + ++LE     + H+II T     D ++  K        L L   DE  
Sbjct: 104 AVVYGGESYTKQFRSLE----AKPHLIIATPGRAIDHLERGKIDLSALKILTLDEADEML 159

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + G Q+ L+  L +       +L +AT  P            I KI  K   +K  K + 
Sbjct: 160 KMGFQEALETILKKIPEERQTVLFSATLPPF-----------IKKIASK--YQKDTKILQ 206

Query: 463 IPINRID-EVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFT 515
           +P+  I    IE+   ++ E  KA  +   ++ KK+      +N +  V+   +  +   
Sbjct: 207 VPVKNIAVNAIEQNYFLVKEVDKAKLLVRLLDLKKDYSTILFANTKKDVDEITAYLQDKG 266

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
                +HG +    ++ VM++F+ G  K+LIAT V   G+D+ D  ++I  +  H     
Sbjct: 267 FLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAARGLDISDIKMVINYDLPHEDEVY 326

Query: 576 LHQLRGRVGRG 586
           +H++ GR GR 
Sbjct: 327 VHRI-GRTGRA 336


>gi|58697110|ref|ZP_00372550.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58698416|ref|ZP_00373327.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630895|ref|YP_002727686.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
           wRi]
 gi|58535071|gb|EAL59159.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58536598|gb|EAL59931.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592876|gb|ACN95895.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
           wRi]
          Length = 402

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 167/387 (43%), Gaps = 56/387 (14%)

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGKTLV 309
           +G+P ++     Q + +N  F PT  Q  AI   LQ          IL     G+GKTL 
Sbjct: 1   MGLPASLR----QALDKNNLFVPTPIQIQAIPLALQGKD-------ILGSAQTGTGKTLA 49

Query: 310 ALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIVEIITGNMPQAHRR 365
             I + A +      G A+++ P   LA Q    I+K  +QN+ + V ++ G  P   + 
Sbjct: 50  FAIPLVAKLLNEPNTGSALVIVPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQL 109

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHR-----FGVQQRLKLT 415
             L++    +  I+IGT     D I+   LI     ++++DE  R     FGVQ      
Sbjct: 110 NQLQK----KPQIVIGTPGRIIDHIERKTLITRNVSVLVLDETDRMFDMGFGVQIEE--- 162

Query: 416 QKATAPHVLLMTATP-IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                    +M   P I +TL+ ++    DI K+ EK   R    +V   +    ++ + 
Sbjct: 163 ---------IMKHLPKIRQTLMFSATLPGDIVKLAEKYLNRPERISVDCEVTTSVKIKQE 213

Query: 475 LKVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
           + V  SE +K   +  Q+ +++ S        R   +  + LH+   S++AI HG +   
Sbjct: 214 I-VYASESEKYEKLVTQLCQREGSIIIFVKTKRGADQLAHRLHKDDYSALAI-HGDLRQH 271

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            +E V++SF+ G  ++++AT V   G+D+     +I  +A       +H++ GR  R   
Sbjct: 272 KRERVINSFRRGRNQIMVATDVASRGLDIPHIQHVINYDAPQSQADYIHRI-GRTARAGA 330

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTE 615
               +    P        RL VL + E
Sbjct: 331 EGYALSFVTP----QDKRRLPVLADKE 353


>gi|295104399|emb|CBL01943.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           SL3/3]
          Length = 395

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 147/336 (43%), Gaps = 31/336 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I +   G+GKT    I +   ++      QAVIMAP   LAQQ  E +   T    ++ V
Sbjct: 42  IAKAPTGTGKTCAFGIPVVEHIQPENKYPQAVIMAPTRELAQQIAEELTNLTYFMPEVQV 101

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY--------KLILVIVDEQH 404
             + G    A+  K  +R+A G   I++ T     D  +++        +++L   DE  
Sbjct: 102 ACVYGG---ANMEKQAKRLAEG-CQIVVATPGRLMDHYKHHSIDISHVTQIVLDEADEML 157

Query: 405 RFGVQQRLK-LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKP--AGRKPIKT 460
             G  + ++ + +   A   L M +  I R ++ +  L   +  +IT +P    +  I  
Sbjct: 158 NMGFYKDVRHIIEMMKARKALSMFSATISREVMDIGWLYQHNAEEITVQPREESQPKITQ 217

Query: 461 VIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            ++  +  +++ +  ++++ EG K+    C       ++ F +     N L      S+ 
Sbjct: 218 YMLETSGRNKLSDLAQIIIGEGYKRVMVFC-------DTKFNTAT-LANQL-ARLGFSVD 268

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG +S  ++  +M +F++G   +L+AT V   GIDV D   +I  +         H++
Sbjct: 269 CLHGDLSQKERNQIMQAFRDGKLAILVATDVAARGIDVSDVDAVINYDVPSENEHYTHRI 328

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
            GR GR ++     L Y P   K     L + +NT+
Sbjct: 329 -GRTGRAKKEGVSYLFYVPEEKKRVQELLRLTRNTD 363


>gi|218290475|ref|ZP_03494595.1| primosomal protein N' [Alicyclobacillus acidocaldarius LAA1]
 gi|218239496|gb|EED06691.1| primosomal protein N' [Alicyclobacillus acidocaldarius LAA1]
          Length = 805

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 98/207 (47%), Gaps = 31/207 (14%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q +A++  L +M+++   + +L G  GSGKT V +  + AA+E  GQA+++ P   L
Sbjct: 267 TPYQAAAVR-ALTEMARQGHGVALLHGVTGSGKTEVYMHLIRAAIEEEGQALVLVPEIAL 325

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             Q    ++++ +     V ++   +    RR+   R+  G+A ++IG  +     ++  
Sbjct: 326 TPQ---LVQRFERRFGDRVAVLHSGLSLGERREEWTRVLEGEASVVIGARSAVFAPMR-- 380

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPH-----------------VLLMTATPIPRTLV 436
           KL LV++DE+H    +Q         APH                 V+L +ATP   ++ 
Sbjct: 381 KLRLVVIDEEHEPSYKQE-------DAPHYDAREVAMWRAREAGALVVLGSATPSLASMF 433

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVII 463
               GD  +  +  + A R+P+ +V +
Sbjct: 434 RVERGDARLVSLPVR-ANRRPLPSVDV 459


>gi|190571168|ref|YP_001975526.1| primosomal protein N [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018572|ref|ZP_03334380.1| primosomal protein N [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357440|emb|CAQ54874.1| primosomal protein N [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995523|gb|EEB56163.1| primosomal protein N [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 654

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 23/200 (11%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVI 326
           I +  +  Q++A   I+ ++++ +  + +L G+ GSGKT V L  +A  +E     Q +I
Sbjct: 120 IDYQLSPEQQAARDKIISNLNEYS--VTLLDGETGSGKTEVYLSVIARLIEIVNDAQVLI 177

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-AL 385
           + P  +L  Q    +  ++Q +  I E  +G  P+A R   L  IA+G A IIIG   +L
Sbjct: 178 LLPEIVLTSQLVNRV--HSQISGNIAEWHSGLTPKARRNNWL-NIANGSAQIIIGARSSL 234

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATPIPRT 434
           F   + Y  L L+IVDE+H    +Q            + L +    P ++L +ATP+  T
Sbjct: 235 F---LPYKNLKLIIVDEEHDSSFKQEQGIIYNARDMAIILAKLENIP-IILSSATPLLET 290

Query: 435 LVLTSLGDIDISKITEKPAG 454
           +     G+ +  K+TE+  G
Sbjct: 291 IYHVKKGNYNHVKLTERFGG 310


>gi|166032720|ref|ZP_02235549.1| hypothetical protein DORFOR_02435 [Dorea formicigenerans ATCC
           27755]
 gi|166027077|gb|EDR45834.1| hypothetical protein DORFOR_02435 [Dorea formicigenerans ATCC
           27755]
          Length = 738

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 19/173 (10%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P + T  Q+ AI    +D SQ++    +L G  GSGKT V +  ++  V  G QA+++ P
Sbjct: 202 PLTHTPEQQQAIDTFWKDYSQRHYGTYLLYGVTGSGKTEVYIEMISRVVSQGKQAIMLIP 261

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V I+   + Q  R   +ER+  G+  ++IG   ALF 
Sbjct: 262 EIALTYQTVMRFYARFGNR----VSILNSRLSQGERSDQMERVRRGEVDVMIGPRSALF- 316

Query: 388 DSIQYYKLILVIVDEQHR--FGVQQRLKLTQKATA--------PHVLLMTATP 430
               +  L L+++DE+H   +  +Q  +   + TA          V+L +ATP
Sbjct: 317 --TPFSNLGLIVIDEEHEPTYKSEQVPRYHARETAIRRAQIEQASVVLGSATP 367


>gi|17536101|ref|NP_495892.1| DEAD boX helicase homolog family member (ddx-19) [Caenorhabditis
           elegans]
 gi|3879543|emb|CAA90406.1| C. elegans protein T07D4.4b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 638

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 141/325 (43%), Gaps = 61/325 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT+ QE+A+  +L  M   + +  I Q   G+GKT   ++ M   ++      Q + +AP
Sbjct: 257 PTRIQETALPLLL--MEPPSNL--IAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAP 312

Query: 330 IGILAQQHYEFIKK---YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA+Q  E ++K   +  N +I   I  GNM     RK  E+I       +IGT  + 
Sbjct: 313 TLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTEQI-------VIGTPGIT 365

Query: 387 QDSIQYYKLI------LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           +D +Q YK I       +++DE       Q    T  +T  + ++  A+   ++++ ++ 
Sbjct: 366 RDYLQKYKCIDPSKIRCLVLDEADVMIYHQ--GFTDISTTIYNMVEDASDSVQSMLFSAT 423

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D  +     K           I  N I  +++R +  L   K+ Y  C      ++S +
Sbjct: 424 YDEPVINFATK-----------IIKNAIVVMLKREEQALPNIKQFYVQC----ACRDSKY 468

Query: 501 RSVVERFNSL------------------HEHFTS---SIAIIHGRMSDIDKESVMDSFKN 539
            ++V  ++ L                  +E+  +    + ++HG M+ +++   +  FK 
Sbjct: 469 AAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKR 528

Query: 540 GTCKLLIATTVIEVGIDVVDASIII 564
           G  K+LI T V   GIDV   S++I
Sbjct: 529 GDFKVLITTNVFARGIDVAQVSVVI 553


>gi|53713306|ref|YP_099298.1| ATP-independent RNA helicase [Bacteroides fragilis YCH46]
 gi|52216171|dbj|BAD48764.1| ATP-independent RNA helicase [Bacteroides fragilis YCH46]
          Length = 439

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 129/325 (39%), Gaps = 47/325 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    GSGKTL  L+ +  +++A   G QAV++ P   LA Q  +  K     T+    
Sbjct: 35  ILLSPTGSGKTLAFLLPLVGSLKADVKGVQAVVLVPSRELALQIEQVFK--AMGTEFKAM 92

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
              G  P     + ++ +   Q  +IIGT     D     +     + L+++DE  +   
Sbjct: 93  SCYGGRPAMEEHRTMKGM---QPAVIIGTPGRMNDHLSKQNFDASTVSLLVIDEFDKCLE 149

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLG-----DIDISKITEKPAGRKPI 458
           FG Q+ +   + Q        L +AT        T L      D   + + E    R  +
Sbjct: 150 FGFQEEMATVIGQLPDLKRRFLTSATDAEEIPQFTGLNRTIKLDFLTNDVEES---RLRL 206

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             V+ P     E + +L   L       +           N R  V+R ++L      S 
Sbjct: 207 MKVVSPAKDKIETLYKLLCTLGSSSSIVF----------CNHRDAVDRVSALLTEKGVSN 256

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL----- 573
              HG M   D+E  +  F+NG+C +L++T +   G+D+ +   II     H+ L     
Sbjct: 257 ERFHGGMEQPDRERALYKFRNGSCPVLVSTDLAARGLDIPEVEHII-----HYHLPVNEE 311

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
           A  H+  GR  R +   +  L+ +P
Sbjct: 312 AFTHR-NGRTARWDATGTSYLILNP 335


>gi|224112054|ref|XP_002316069.1| predicted protein [Populus trichocarpa]
 gi|222865109|gb|EEF02240.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 133/312 (42%), Gaps = 48/312 (15%)

Query: 302 VGSGKTLVALIAM-------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI             + G   +++AP   LA Q  + + K+ +++++    
Sbjct: 194 TGSGKTLGYLIPAFILLQQRRNNAQNGPTVLVLAPTRELATQIQDEVMKFGRSSRVSCTC 253

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF--- 406
           + G  P+  + K LER     A I++ T     D      I + ++ L+++DE  R    
Sbjct: 254 LYGGAPKIPQLKELER----GADIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDM 309

Query: 407 GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           G +            QR  L   AT P  +   A+ +    V  ++G +D+       A 
Sbjct: 310 GFEPQIRKIVNEIPPQRQTLMFTATWPKEVRKIASDLLVHPVQVNIGSVDVLS-----AN 364

Query: 455 RKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           +   + V ++P    D  +E++      G KA   C        S  R   +   S+  +
Sbjct: 365 KSITQYVEVVPQMEKDRRLEQILRTQERGSKAIIFC--------STKRLCDQLARSIGRN 416

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F +  A IHG  S  +++  ++ F++G   +L+AT V   G+D+ D  I+I  +      
Sbjct: 417 FGA--AAIHGDKSQGERDWALNQFRSGKSPILVATDVAARGLDIKDIRIVINYDFPSGIE 474

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 475 DYVHRI-GRTGR 485


>gi|326519741|dbj|BAK00243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 649

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 138/312 (44%), Gaps = 48/312 (15%)

Query: 302 VGSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L+     V+        G   ++++P   LA Q  +   K+ ++++I    
Sbjct: 207 TGSGKTLGYLLPGFILVKNLRHNSRDGPTVLVLSPTRELATQIQDEAIKFGRSSRISSTC 266

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--- 406
           + G  P+  + + LER     A I++ T     D ++  K+ L     +++DE  R    
Sbjct: 267 LYGGAPKGPQLRDLER----GADIVVATPGRLNDILEMGKVSLRQVAYLVLDEADRMLDM 322

Query: 407 GVQQRLKLTQKATAP--HVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
           G + +++   K   P    L+ TAT  PR +      +LT+   ++I    E  A +   
Sbjct: 323 GFEPQIRKIVKQVQPKRQTLMFTAT-WPREVRKIASDLLTNPVQVNIGNTDELVANKSIT 381

Query: 459 KTVIIPIN-----RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           + V +  +     R+D+++ + +     G K    C        S  R   +   +L   
Sbjct: 382 QYVEVTTSMEKGRRLDQILRQQE----PGSKVIIFC--------STKRMCDQLSRNLSRQ 429

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           + +S   IHG  S  +++SV+  F+ G C +L+AT V   G+DV D  +++  +      
Sbjct: 430 YGASA--IHGDKSQAERDSVLSEFRTGRCPILVATDVAARGLDVKDIRVVVNYDFPTGVE 487

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 488 DYVHRI-GRTGR 498


>gi|121715182|ref|XP_001275200.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|134034067|sp|A1C5V3|DBP3_ASPCL RecName: Full=ATP-dependent RNA helicase dbp3
 gi|119403357|gb|EAW13774.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 503

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 145/348 (41%), Gaps = 53/348 (15%)

Query: 300 GDVGSGKTLV-ALIAMAAAVEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            + GSGKTL   L  +   +++G          AVI++P   LA Q Y+ I KY  +  I
Sbjct: 129 AETGSGKTLAFGLPCLKKILDSGKIKFKNARPAAVIISPTRELAMQIYDQISKYAGSIGI 188

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR 405
               I G + +  +R+AL+      A I++ T    +D     S+   K+  +++DE  R
Sbjct: 189 KATCIFGGVKKDEQREALK-----SAAIVVATPGRLKDLQNDGSVDLGKVKYLVLDEADR 243

Query: 406 F---GVQQRLKLTQKATAP---HVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKP 457
               G +Q +K    +T       ++ TAT  P  R L  T +       I   P+    
Sbjct: 244 MLDKGFEQDIKDIISSTPDSKRQTVMFTATWPPSVRDLAATFMTSAVTVTIGGDPSADPR 303

Query: 458 IKTVIIPINRIDEVIE---------RLKVVLSEGKKAYWICPQIE----EKKESNFRSVV 504
             T      RI + +E         RL  +LSE ++      ++      KKE+      
Sbjct: 304 ANT------RIKQTVEVVQSHDKEYRLVQLLSENQRGAAALDKVLVFCLYKKEAM----- 352

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            R   L  +    +A IHG ++  ++   +D+FK+G   +L+AT V   G+D+    ++I
Sbjct: 353 -RVERLLRNKNFKVAGIHGDLNQHERFKSLDAFKSGAATVLVATDVAARGLDIPSVKLVI 411

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
                      +H++ GR GR       I L+       S   ++VLK
Sbjct: 412 NVTFPLTVEDYVHRI-GRTGRAGAEGRAITLFTETDKAQSGALINVLK 458


>gi|222149119|ref|YP_002550076.1| cold-shock dead-box protein A [Agrobacterium vitis S4]
 gi|221736104|gb|ACM37067.1| cold-shock dead-box protein A [Agrobacterium vitis S4]
          Length = 673

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 138/323 (42%), Gaps = 60/323 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG----GQAV-----IMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  +       G+AV      +AP   LA Q    ++   +N
Sbjct: 41  LVSAQTGSGKTVAFGLALAPTLLGSENRFGRAVKPLALCIAPTRELALQVQRELEWLYEN 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
           T  I     G M   + R+ALER     AHII+GT    +D I    L L     V++DE
Sbjct: 101 TGAIFATCVGGMDIRNERRALER----GAHIIVGTPGRLRDHITRRALDLSGLRAVVMDE 156

Query: 403 QHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
                  G ++ L+  L +       L+ +AT +PR++        D+++  ++ A R  
Sbjct: 157 ADEMLDLGFREDLEFILKESPDERRTLMFSAT-VPRSIA-------DLARSYQRDAKR-- 206

Query: 458 IKTV---------------IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           I+TV                +P ++ + +I  L+    E + A   C        +N   
Sbjct: 207 IETVSEQKQHIDIEYRAMLTVPADKENAIINALR--FYEARNAIVFC-----STRANVNH 259

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +  R   LH    S +A+  G +S  ++   + + ++G  ++ +AT V   GID+    +
Sbjct: 260 LTAR---LHNRGFSVVAL-SGELSQSERTHALQAMRDGRARVCVATDVAARGIDLPGLEL 315

Query: 563 IIIENAEHFGLAQLHQLRGRVGR 585
           +I  +        LH+  GR GR
Sbjct: 316 VIHADLPTNSETLLHR-SGRTGR 337


>gi|295108814|emb|CBL22767.1| Transcription-repair coupling factor (superfamily II helicase)
           [Ruminococcus obeum A2-162]
          Length = 693

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 55/103 (53%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T+ Q SAI+D  +DM     M R++ GDVG GKT VAL A   AV+   Q V + 
Sbjct: 562 FPYEETEDQLSAIEDTKRDMESTKIMDRLVCGDVGYGKTEVALRAAFKAVQESRQVVYLV 621

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           P  ILAQQ Y    +  +   + V+++      A ++K +E +
Sbjct: 622 PTTILAQQIYNTFIQRMKEFPVRVDLLCRFRTPAQQKKTIEDL 664


>gi|227824325|ref|ZP_03989157.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21]
 gi|226904824|gb|EEH90742.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21]
          Length = 444

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 143/354 (40%), Gaps = 64/354 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAP 329
           PT  QE AI  +LQ          I +   G GKTL   V L      V+   QA+I++P
Sbjct: 56  PTPVQERAIPALLQGRDV------ICRAQTGVGKTLSFVVPLFTKITEVKTFVQALILSP 109

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ    IKK    T + V  ++G       R+ L      +A++++GT     D 
Sbjct: 110 TRELAQQTAGEIKKLADGTPVRVLAVSGGKDYDEERRKL----GNKANVLVGTPGRLLDH 165

Query: 390 IQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP-RTLVLTSL 440
           ++           L+L  VDE  R G  + ++           L++  P P +T++ ++ 
Sbjct: 166 LRKGNTSLGGITYLVLDEVDEMLRQGFGEDIET----------LLSLMPQPHQTMMCSAT 215

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D ++ K+  K   + P    I P       I ++ + +SE            + KE   
Sbjct: 216 LDEEVRKLG-KMITKNPRLIDIDPKEATASTIHQVCIKVSE------------DHKEEAL 262

Query: 501 RSVVERFNS-LHEHFTSS-----------------IAIIHGRMSDIDKESVMDSFKNGTC 542
           +++++R N  L   F  S                   ++HG MS   +   M+ F+    
Sbjct: 263 QTIIDRCNPFLMLVFCKSKERAIEVYDWLYGKGFNADVLHGDMSQQKRRQAMERFRKAKT 322

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           ++L+A+ +   G+DV   + ++  +  H     +H++ GR GR       I  Y
Sbjct: 323 QILVASDIAARGLDVEGVTQVVNFDIPHDPDWYVHRI-GRTGRAGNEGEAITFY 375


>gi|253565285|ref|ZP_04842740.1| ATP-independent RNA helicase [Bacteroides sp. 3_2_5]
 gi|251945564|gb|EES85971.1| ATP-independent RNA helicase [Bacteroides sp. 3_2_5]
          Length = 443

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 129/325 (39%), Gaps = 47/325 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    GSGKTL  L+ +  +++A   G QAV++ P   LA Q  +  K     T+    
Sbjct: 39  ILLSPTGSGKTLAFLLPLVGSLKADVKGVQAVVLVPSRELALQIEQVFK--AMGTEFKAM 96

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
              G  P     + ++ +   Q  +IIGT     D     +     + L+++DE  +   
Sbjct: 97  SCYGGRPAMEEHRTMKGM---QPAVIIGTPGRMNDHLSKQNFDASTVSLLVIDEFDKCLE 153

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLG-----DIDISKITEKPAGRKPI 458
           FG Q+ +   + Q        L +AT        T L      D   + + E    R  +
Sbjct: 154 FGFQEEMATVIGQLPDLKRRFLTSATDAEEIPQFTGLNRTIKLDFLTNDVEES---RLRL 210

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             V+ P     E + +L   L       +           N R  V+R ++L      S 
Sbjct: 211 MKVVSPAKDKIETLYKLLCTLGSSSSIVF----------CNHRDAVDRVSALLTEKGVSN 260

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL----- 573
              HG M   D+E  +  F+NG+C +L++T +   G+D+ +   II     H+ L     
Sbjct: 261 ERFHGGMEQPDRERALYKFRNGSCPVLVSTDLAARGLDIPEVEHII-----HYHLPVNEE 315

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
           A  H+  GR  R +   +  L+ +P
Sbjct: 316 AFTHR-NGRTARWDATGTSYLILNP 339


>gi|331004324|ref|ZP_08327799.1| hypothetical protein HMPREF0491_02661 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411390|gb|EGG90805.1| hypothetical protein HMPREF0491_02661 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 743

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 85/185 (45%), Gaps = 15/185 (8%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           ++  + QE+AI     D  +  +   +L G  GSGKTLV +  +   +  G +A+++ P 
Sbjct: 213 YTLNQEQETAINIFKSDFEEGRKNTYLLHGITGSGKTLVFINMIKYVISKGYKAIVLIPE 272

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             L    Y+ + +  ++    V II   + +  R    +RI +  A +IIG  +     +
Sbjct: 273 ISLT---YQTVLRMAEHFGNRVAIINSKLSKNERFYQFDRIKNDDADVIIGPRSAIFAPV 329

Query: 391 QYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           +  KL L+++DE+H           F V+   K   + T   +LL +ATP P T      
Sbjct: 330 K--KLGLIVIDEEHDSAYKNENVPTFNVRDVAKKLSEITNASLLLASATPTPETYNRAMN 387

Query: 441 GDIDI 445
           G+I +
Sbjct: 388 GEIKL 392


>gi|213422180|ref|ZP_03355246.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 77

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 51/76 (67%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +  K+L ++PF PT +Q   + +I +DM+    M+R++QGDVGSGKTLVA +A   A+  
Sbjct: 2   LKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAH 61

Query: 321 GGQAVIMAPIGILAQQ 336
           G Q  +MAP  +LA+Q
Sbjct: 62  GKQVALMAPTELLAEQ 77


>gi|60681555|ref|YP_211699.1| putative ATP-independent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|60492989|emb|CAH07768.1| putative ATP-independent RNA helicase [Bacteroides fragilis NCTC
           9343]
          Length = 443

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 129/325 (39%), Gaps = 47/325 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    GSGKTL  L+ +  +++A   G QAV++ P   LA Q  +  K     T+    
Sbjct: 39  ILLSPTGSGKTLAFLLPLVGSLKADVKGVQAVVLVPSRELALQIEQVFK--AMGTEFKAM 96

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
              G  P     + ++ +   Q  +IIGT     D     +     + L+++DE  +   
Sbjct: 97  SCYGGRPAMEEHRTMKGM---QPAVIIGTPGRMNDHLSKQNFDASTVSLLVIDEFDKCLE 153

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLG-----DIDISKITEKPAGRKPI 458
           FG Q+ +   + Q        L +AT        T L      D   + + E    R  +
Sbjct: 154 FGFQEEMATVIGQLPDLKRRFLTSATDAEEIPQFTGLNRTIKLDFLTNDVEES---RLRL 210

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             V+ P     E + +L   L       +           N R  V+R ++L      S 
Sbjct: 211 MKVVSPAKDKIETLYKLLCTLGSSSSIVF----------CNHRDAVDRVSALLTEKGVSN 260

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL----- 573
              HG M   D+E  +  F+NG+C +L++T +   G+D+ +   II     H+ L     
Sbjct: 261 ERFHGGMEQPDRERALYKFRNGSCPVLVSTDLAARGLDIPEVEHII-----HYHLPVNEE 315

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
           A  H+  GR  R +   +  L+ +P
Sbjct: 316 AFTHR-NGRTARWDATGTSYLILNP 339


>gi|288942804|ref|YP_003445044.1| primosomal protein N' [Allochromatium vinosum DSM 180]
 gi|288898176|gb|ADC64012.1| primosomal protein N' [Allochromatium vinosum DSM 180]
          Length = 733

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 95/425 (22%), Positives = 175/425 (41%), Gaps = 103/425 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V +  + + +  G QA+++ P IG+  Q    F  +        + ++
Sbjct: 221 LLDGVTGSGKTEVYIRLIESVIAQGRQALVVVPEIGLTPQLRERFRTRLPGP----IAVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR---- 411
              +  + R +   R A G+A++I+GT +     I   +L L++VDE+H   ++Q+    
Sbjct: 277 HSALKASERERNWLRAARGEANLILGTRSAVLAPIP--RLGLIVVDEEHDDSLKQQDGLR 334

Query: 412 -------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK-------- 456
                  ++  Q A  P V+L +ATP   TL    LG     ++TE+  G +        
Sbjct: 335 YSGRDLAVRRAQLAGCP-VVLGSATPSLETLRNAQLGRYRWLRLTERAGGARPPTISILD 393

Query: 457 ----PIKTVIIPINR---IDEVIERLKVVLSEGKKAY----------WI--CPQIEEK-- 495
               P++  + P+ R   + E+    +++L   ++ Y          W+  CP  + +  
Sbjct: 394 IRNQPLRAGLSPLLRDHMLAELTAGNQILLFLNRRGYAPVLTCHACGWVGECPHCDARLT 453

Query: 496 ---------------------KESNFRSVVERF---NSLHEHFTSSIAIIHGRMSDIDKE 531
                                +    RS+  R     +              R++ +D++
Sbjct: 454 LHLSERRLWCHHCGWSCLQPGQCPKCRSLELRMLGRGTERLEEELVELFPETRIARLDRD 513

Query: 532 S---------VMDSFKNGTCKLLIATTVIEVGIDVVDASII-IIE-----NAEHFGLAQ- 575
           S         V+D+  +G  ++L+ T ++  G D    +++ I+E      A  F  A+ 
Sbjct: 514 STRRRGELGRVLDAVHSGETQILLGTQMLAKGHDFPGVTLVGILELDQSLYASDFRAAER 573

Query: 576 ----LHQLRGRVGRGEEISSCIL-LYHP--PLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
               + Q+ GR GR E     +L   HP  PL +      S+L+    GF  AE  L++R
Sbjct: 574 TAQLIVQVAGRAGRAERPGRVVLQTRHPEHPLLQ------SLLREGYSGF--AEAALRER 625

Query: 629 KEGEI 633
            E E+
Sbjct: 626 AEAEL 630


>gi|254421014|ref|ZP_05034738.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
 gi|196187191|gb|EDX82167.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
          Length = 545

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 149/353 (42%), Gaps = 38/353 (10%)

Query: 302 VGSGKT------LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            G+GKT      LV  +A   A     +A+++AP   LA Q  E   KY + T++   ++
Sbjct: 48  TGTGKTAAFTLPLVERLASGRARARMPRAIVLAPTRELADQVAESFAKYAKGTKLTWVLL 107

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---G 407
            G +    +  AL +       ++I T     D  +  K++L     ++VDE  R    G
Sbjct: 108 IGGVSMGDQVAALNK----GVDVLIATPGRLLDLFERGKMLLTGVEIMVVDEADRMLDMG 163

Query: 408 VQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKI-TEKPA-GRKPIKTVII 463
               ++   K T P    L  +AT  P    LT+    D ++I   +PA     I   I+
Sbjct: 164 FIPDIERIFKLTPPRRQTLFFSATMPPEITRLTAAFLKDPTRIEASRPAMTADTITQYIV 223

Query: 464 PINRIDEVIER--LKVVLS--EGKKAYWICPQIEEKKESNFRSVVERF-NSLHEHFTSSI 518
            I   D   +R  L+ ++S  + +     C         N +S V+    SL  H   + 
Sbjct: 224 RIPTSDPKAKRAALRALMSRTDVRNGIVFC---------NRKSEVDIVAKSLKTHGFDAA 274

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           AI HG +    +   +  F++G  K+L+A+ V   G+D+ D S +   +  H     +H+
Sbjct: 275 AI-HGDLDQSHRTKTLADFRSGALKILVASDVAARGLDIPDVSHVFNYDVSHHADDYVHR 333

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           + GR GR  ++    ++  P   K+    L ++K      ++ + D    K+G
Sbjct: 334 I-GRTGRAGKLGQAFMIVTPADDKSLDKVLKLIKMDPQELVLDDIDFDAIKDG 385


>gi|163741552|ref|ZP_02148943.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
 gi|161385286|gb|EDQ09664.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
          Length = 718

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 155/378 (41%), Gaps = 55/378 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +AMA  +    +         A+++AP   LA Q   E    Y +
Sbjct: 49  LVSAQTGSGKTVGFGLAMAPTLLGDAEKLDRADLPLALVIAPTRELALQVKRELGWLYAE 108

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILV 398
               +V  + G M     R+ALER     AHI++ T    +D I        Q   ++L 
Sbjct: 109 AGAHVVSTV-GGMDMRDERRALER----GAHIVVATPGRLRDHIMRGSINLSQVRAVVLD 163

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE---KPAGR 455
             DE    G ++ L+          +L  +    RTL+ ++     I+++ E   K   R
Sbjct: 164 EADEMLDLGFREDLEF---------ILGESPEDRRTLMFSATVPTGIARLAETYLKDHQR 214

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSLH 511
             IKTV       D   + L V   + + A     +  E   +    N R+VV R  +  
Sbjct: 215 --IKTVAEASQHADIEYQMLAVAQRDVENAVINVLRFHESPNAIVFCNTRAVVNRMTTRL 272

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            +   S+  + G +S  ++ + + S ++G  ++ +AT V   GID+    ++I     H 
Sbjct: 273 SNRGFSVVALSGELSQAERSNALQSLRDGRARVCVATDVAARGIDLPKLDLVI-----HA 327

Query: 572 GLAQLHQL----RGRVGR-GEEISSCILLYHPPLSKNSYTRL--SVLKNTEDGFLIAEED 624
            L   H+      GR GR G +  S +++  PP +K    RL  S     E     + +D
Sbjct: 328 DLPSSHETLLHRSGRTGRAGRQGVSALIV--PPKAKGKALRLLRSAKITAETSPAPSADD 385

Query: 625 LKQRKEGEILGIKQSGMP 642
           ++ R    +LG K    P
Sbjct: 386 VRTRDFERLLGDKAWSEP 403


>gi|160944592|ref|ZP_02091819.1| hypothetical protein FAEPRAM212_02105 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443776|gb|EDP20780.1| hypothetical protein FAEPRAM212_02105 [Faecalibacterium prausnitzii
           M21/2]
          Length = 435

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 151/341 (44%), Gaps = 41/341 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I +   G+GKT    I +   ++      QAVIMAP   LAQQ  E +   T    ++ V
Sbjct: 82  IAKAPTGTGKTCAFGIPVVEHIQPENKYPQAVIMAPTRELAQQIAEELTNLTYFMPEVQV 141

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY--------KLILVIVDEQH 404
             + G    A+  K  +R+A G   I++ T     D  +++        +++L   DE  
Sbjct: 142 ACVYGG---ANMEKQAKRLAEG-CQIVVATPGRLMDHYKHHSIDISHVTQIVLDEADEML 197

Query: 405 RFGVQQRLK-LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKP--AGRKPIKT 460
             G  + ++ + +   A   L M +  I R ++ +  L   +  +IT +P    +  I  
Sbjct: 198 NMGFYKDVRHIIEMMKARKALSMFSATISREVMDIGWLYQHNAEEITVQPREESQPKITQ 257

Query: 461 VIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            ++  +  +++ +  ++++ EG K+    C       ++ F +     N L      S+ 
Sbjct: 258 YMLETSGRNKLSDLAQIIIGEGYKRVMVFC-------DTKFNTAT-LANQL-ARLGFSVD 308

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII-----IENAEHFGLA 574
            +HG +S  ++  +M +F++G   +L+AT V   GIDV D   +I      EN EH+   
Sbjct: 309 CLHGDLSQKERNQIMQAFRDGKLAILVATDVAARGIDVSDVDAVINYDVPSEN-EHY--- 364

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
             H++ GR GR ++     L Y P   K     L + +NT+
Sbjct: 365 -THRI-GRTGRAKKEGVSYLFYVPEEKKRVQELLRLTRNTD 403


>gi|118589105|ref|ZP_01546512.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Stappia aggregata IAM 12614]
 gi|118438434|gb|EAV45068.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Stappia aggregata IAM 12614]
          Length = 505

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 148/350 (42%), Gaps = 52/350 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI  +L+    +  +L I Q   G+GKT    + M   +E G       + +I
Sbjct: 48  PTAIQSGAIPQVLE----RRDILGIAQ--TGTGKTASFTLPMLTLLEKGRARARMPRTLI 101

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   +Y  N ++ + ++ G +  + + K L+R       ++I T    
Sbjct: 102 LEPTRELAAQVEENFSRYGTNHKLNIALLIGGVSFSEQDKKLDR----GTDVLIATPGRL 157

Query: 387 QDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLTS 439
            D  +  KL+L     +++DE  R        +      P +  +    P  R TL  ++
Sbjct: 158 LDHFERGKLLLQGVEILVIDEADR--------MLDMGFIPDIERICKLIPFTRQTLFFSA 209

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKE- 497
               +I ++TE    + P +  + P +   E V + LK   S+  +       + E  E 
Sbjct: 210 TMPPEIQRLTETFL-QNPARIEVAPTSSTAENVAQFLKATDSKDYEKRAALRDLLEGAED 268

Query: 498 --------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   +  R V   + SL  H   ++  +HG M    +  ++D+F+ GT KLL+A+ 
Sbjct: 269 LQNAIVFCNRKRDVTTVYRSLERH-EYNVGALHGDMDQRTRMMMLDNFRKGTIKLLVASD 327

Query: 550 VIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           V   G+D+ + S +    +  NAE +    +H++ GR GR     +   L
Sbjct: 328 VAARGLDIPEVSHVFNFDVPSNAEDY----VHRI-GRTGRAGRKGTAFTL 372


>gi|319405816|emb|CBI79446.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3]
          Length = 465

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 158/382 (41%), Gaps = 62/382 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q   I  ILQ    K  +L I Q   G+GKT   ++ M   +E G       + +I
Sbjct: 29  PTPIQSGTIPHILQ----KRDILGIAQ--TGTGKTASFVLPMLTLLEKGRARARIPRTLI 82

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   KY  N  + V ++ G +    + + LER     A ++I T    
Sbjct: 83  LEPTRELATQVQENFDKYGVNHNLNVALLIGGVSFEQQDRKLER----GADVLIATPGRL 138

Query: 387 QDSIQYYKLILV-----IVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRT 434
            D  ++ KL+L+     ++DE  R         +++  KLT        L  +AT  P  
Sbjct: 139 LDHFEHGKLLLLGIEILVIDEADRMLDMGFIPNIERICKLT--PFTRQTLFFSATMAPEI 196

Query: 435 LVLT-----SLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             LT     S   I+I+K   T K   ++ +K+   P ++   + E +     E K A  
Sbjct: 197 TKLTKQFLHSPVYIEITKASSTAKKITQRLVKSGSKPWDKRAILRELIHKEGDELKNAII 256

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C        +  + + E   SL +H   S+  +HG M    + S + +FK+    LL+A
Sbjct: 257 FC--------NRKKDISELVRSLIKH-NFSVGTLHGDMDQHSRTSTLANFKDNKLTLLVA 307

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           + V   G+D+   S +   +        +H++ GR GR               +K S   
Sbjct: 308 SDVASRGLDIPAVSHVFNYDVPTHAEDYIHRI-GRTGR---------------AKRSGKA 351

Query: 608 LSVLKNTEDGFLIAEEDLKQRK 629
            +++   ++ ++ A E++ Q K
Sbjct: 352 FTIVTKADEKYISAIEEISQEK 373


>gi|225174552|ref|ZP_03728551.1| ATP-dependent DNA helicase, RecQ family [Dethiobacter alkaliphilus
           AHT 1]
 gi|225170337|gb|EEG79132.1| ATP-dependent DNA helicase, RecQ family [Dethiobacter alkaliphilus
           AHT 1]
          Length = 1609

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 104/495 (21%), Positives = 190/495 (38%), Gaps = 98/495 (19%)

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ 195
           ++++  H+      DV+   + A Y  P  L+   F   ++    R  V P WI      
Sbjct: 165 VLLIKKHFASEICGDVDLSTLIAEY--PVALA---FALAVINVKDRFSVTPPWI------ 213

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255
            K++P +    +++ N           P     +Y E        L  R+  K   G   
Sbjct: 214 LKNYPEVERIMDLLRN----------RPCLRGCSYCE------QALDARRGLKWFFGFDS 257

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-AM 314
                      R     P   QE+A+K  + + S    ++ I     G GK++   + A+
Sbjct: 258 ----------YRTFGGEPL--QENAVKAAIDNKS----LVAIFP--TGGGKSITFQVPAL 299

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
            +     G  V+++P+  L +   + ++K      +    I G +    R K+ ER+A G
Sbjct: 300 MSGENVKGLTVVISPLQSLMKDQVDNLEKAGITDAVT---INGLLDPIERAKSFERVADG 356

Query: 375 QAHII-IGTHALFQDSIQYY----KLILVIVDEQHRFGVQ-QRLKLT------------- 415
            A I+ I   +L   +I++     K++  ++DE H F    Q  ++              
Sbjct: 357 SASILYISPESLRSRTIEHILLGRKIVRFVIDEAHCFSAWGQDFRVDYLYIGDFIKTIQE 416

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT------EKPAGRKPIKTVIIPINRID 469
           +K  A  + +   T   +  V+  + D   +K+          A R  ++  +I     +
Sbjct: 417 KKNLAEGIPVSCFTATAKQKVIEDIQDYFKNKLAINLEVFSSSASRTNLRYKVIEKRDQE 476

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI---IHGRMS 526
           E    L+ ++ + +     CP I       + S   R   L E  T    +    HG+M 
Sbjct: 477 EKYNTLRHLIQQKE-----CPTIV------YVSRTRRAYELAERLTKDGYLAKPYHGKMD 525

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF----GLAQLHQLRGR 582
             +K    D+F  G   +++AT+   +G+D  D  ++I     HF     L    Q  GR
Sbjct: 526 KKEKSENQDAFIAGEVPIMVATSAFGMGVDKKDVGMVI-----HFEISDSLENYIQEAGR 580

Query: 583 VGRGEEISS-CILLY 596
            GR E+I++ C +LY
Sbjct: 581 AGRDEQITADCYILY 595


>gi|242765545|ref|XP_002340996.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724192|gb|EED23609.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 497

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 147/348 (42%), Gaps = 55/348 (15%)

Query: 300 GDVGSGKTLV-ALIAMAAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   L  +   V++  +       AVI+ P   LA Q YE ++ Y     + 
Sbjct: 125 AETGSGKTLAFGLPCLKNMVDSEKKLKPSHPRAVILTPTRELAMQIYEQLEGYALRVSVK 184

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
           V  I G + +  +R+AL+  A     I++ T    +D     +I   K+  +++DE  R 
Sbjct: 185 VTCIFGGVRKDEQREALKNTA-----IVVATPGRLKDLESEGAINLSKVKYLVLDEADRM 239

Query: 407 ---GVQQRLK-------LTQKATA------PHVLLMTATPIPRTLVLTSLGDIDISKITE 450
              G +Q +K       ++++ TA      P  +   A    +  V+ ++G     K +E
Sbjct: 240 LDKGFEQDIKDIVSPMPVSRRQTAMFTATWPVAVRNLANSFTQDPVMVTVG----GKPSE 295

Query: 451 KPAGRKPIKTVIIPI------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            P     IK V+  +      NR+ +++ +L     +GK   +            ++   
Sbjct: 296 DPRANTRIKQVVEVLDPRDKENRLTQILGKLTRESPQGKILVFCL----------YKKEA 345

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            R   L +    ++A IHG +S  D+   + +FK+G   +L+AT V   G+D+     ++
Sbjct: 346 MRIERLIQSRGYAVAGIHGDLSQSDRFKSLAAFKSGDVTILVATDVAARGLDIPAVKTVV 405

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
                      +H++ GR GR       I L+      +S   ++VLK
Sbjct: 406 NVTFPLTIEDYVHRI-GRTGRAGADGHAITLFTETDKAHSGALINVLK 452


>gi|307823522|ref|ZP_07653751.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307735507|gb|EFO06355.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 462

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 141/308 (45%), Gaps = 34/308 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKK---YTQNTQI 350
           I Q   GSGKT    I + + ++      QA+++ P   LA Q  + I++   +TQN ++
Sbjct: 45  IAQAKTGSGKTAAFGIGLLSKLDLNSFRVQAMVVCPTRELADQVCKEIRRLARFTQNIKV 104

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR 405
           +   + G +P   +R +LE   HG  H+++GT    Q+     S++   L ++++DE  R
Sbjct: 105 LT--LCGGVPFGPQRASLE---HG-VHVVVGTPGRLQEHLGKRSLRLSNLKVLVLDEADR 158

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID-ISKITEKPAGRKPIKTVIIP 464
                 L +  +     V+  +  P  R  +L S    D I +I++K    KP+ +V I 
Sbjct: 159 M-----LDMGFEEAITDVI--SYAPTHRQTLLFSATYTDPIREISQK-FQFKPV-SVSIE 209

Query: 465 INRIDEVIERLKVVLSEGKK----AYWICPQIEEKKE--SNFRSVVERFNSLHEHFTSSI 518
            +  D  IE+    + + K+     Y +     E      N +   +   S  E+   ++
Sbjct: 210 TSHHDSDIEQRFYQVEKSKRTNALGYLLSYYRPESTVVFCNTKRDCQDVASSLENSGFTV 269

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG +   D++ V+  F N +C +L+AT V   G+D+ D   +I  +        +H+
Sbjct: 270 QALHGDLEQKDRDQVLVRFSNKSCSVLVATDVAARGLDIKDMQAVINYDLPWDPEIYVHR 329

Query: 579 LRGRVGRG 586
           + GR GR 
Sbjct: 330 I-GRTGRA 336


>gi|159469610|ref|XP_001692956.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
           reinhardtii]
 gi|158277758|gb|EDP03525.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
           reinhardtii]
          Length = 571

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 128/310 (41%), Gaps = 45/310 (14%)

Query: 301 DVGSGKTLVALIAMAAAV----------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQ 349
           + GSGKT   ++ M A +          EA G  AV++AP   LAQQ  E   K    T 
Sbjct: 197 ETGSGKTAAFVLPMLAYIMRQPPMNEENEADGPYAVVLAPTRELAQQIEEETHKLAHYTG 256

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
             V  + G      +   L +       I+I T     D I  +  +L     V++DE  
Sbjct: 257 YRVTSVVGGQSIEEQGTKLRK----GCEIVIATPGRLLDCIDRHYAVLNQCNYVVLDEAD 312

Query: 405 RF----------GVQQRL-KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           R           GV   + K T K      +L        T + ++     + ++ +K  
Sbjct: 313 RMIDLGFEPQVIGVLDAMPKSTLKPDEEGAVLEENRTYRTTYMFSATMPPAVERLAKKYL 372

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI---CPQIEEKKESNFRSVVERFNSL 510
            R+P+  VI    R+ + + +   V+ E +K   +      ++EK+   F +   + +++
Sbjct: 373 -RRPVVVVIGSAGRVTDNVTQRVFVVKENEKGRLLEQELNNVDEKRVIVFVNTQRQCDNV 431

Query: 511 HEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII--- 564
           H H         I+HG  +   +E+ +  F++GT  +LIAT V   GIDV D ++++   
Sbjct: 432 HRHMDELGYHCTILHGGKTQDQREAGIKGFRDGTYNVLIATDVAGRGIDVPDVALVVNYD 491

Query: 565 ----IENAEH 570
               IEN  H
Sbjct: 492 MPTNIENYTH 501


>gi|255954845|ref|XP_002568175.1| Pc21g11430 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589886|emb|CAP96040.1| Pc21g11430 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 496

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 139/324 (42%), Gaps = 41/324 (12%)

Query: 301 DVGSGKTL-------VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + GSGKTL         LI   ++     +AVI++P   LA Q Y+ + K+  + +  V 
Sbjct: 125 ETGSGKTLGFGLPCLKKLIDSKSSKPCQPKAVIISPTRELAMQIYDQLVKFGHHEKTQVT 184

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
            I G + +  +R+AL++ A     I++ T    +D     SI   K+  +++DE  R   
Sbjct: 185 CIYGGVGKDEQRRALQKAA-----IVVATPGRLKDLQNDGSIDLGKVNYLVLDEADRMLD 239

Query: 407 -GVQQRLKLTQK---ATAPHVLLMTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIK 459
            G +Q +K   K    +    ++ TAT  PR+   L  T +       I   P+      
Sbjct: 240 KGFEQDIKDILKPMPVSRRQTVMFTAT-WPRSVRDLAATFMKTPVTVTIGGDPSADPRAN 298

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-------FRSVVERFNSLHE 512
           T      RI +V+E +     EG+    +      +K          ++    R  +L  
Sbjct: 299 T------RIKQVVEVVDGREKEGRLVQLLTKSQRGQKSPEKVLVFCLYKKEAMRIENLIR 352

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++A IHG ++  D+   +D+FK G   +LIAT V   G+D+ +  ++I        
Sbjct: 353 NKGFAVAGIHGDLNQSDRFRNLDAFKKGNATVLIATDVAARGLDIPNVKLVINVTFPLTV 412

Query: 573 LAQLHQLRGRVGRGEEISSCILLY 596
              +H++ GR GR       I ++
Sbjct: 413 EDYVHRI-GRTGRAGADGLAITMF 435


>gi|163842399|ref|YP_001626803.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella suis ATCC 23445]
 gi|163673122|gb|ABY37233.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella suis ATCC 23445]
          Length = 626

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 140/336 (41%), Gaps = 41/336 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     +HI++GT    +D I        Q   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GSHIVVGTPGRLRDHITRNALDMSQLRAIVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD----IDISKITEKP 452
            DE    G ++ L+  L +       L+ +AT P P   +     +    I +   T + 
Sbjct: 157 ADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQH 216

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    +   + P  R   +I  L  +  + + +   C         + R  V+   S   
Sbjct: 217 ADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRLS 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 266 NRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNS 325

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
              LH+  GR GR     +C+L+  P L + S  RL
Sbjct: 326 DTLLHR-SGRTGRAGRKGTCVLVV-PFLRRRSAERL 359


>gi|256830903|ref|YP_003159631.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580079|gb|ACU91215.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 475

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 139/336 (41%), Gaps = 48/336 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P   QE+A+  +   M+ K+ ML       GSGKTL  L+ + A + A     QAV++A
Sbjct: 23  TPLPVQEAALPVL---MAGKSAML---VSRTGSGKTLAYLLPILAGINAESMHVQAVVLA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEI--ITGNMPQAHRRKALERIAHGQAHIIIG----- 381
           P   LA Q         ++  + V +  + G    + + + L++    + H++IG     
Sbjct: 77  PTHELAMQINRVATDLAKDAGLGVRVQALIGGAAVSRQIEGLKK----KPHLVIGSAGRM 132

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH +    ++  + + +++DE  R  +++ L+        H+  +T    P T  +    
Sbjct: 133 THLMELGKLKLKETVWLVLDEADRLLIEEGLE--------HIRKITGQLGPETRYV---- 180

Query: 442 DIDISKITEKPA------GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW---ICPQI 492
                  TE PA      G  P    +   N I   I    +V  E  K  W   +   +
Sbjct: 181 ---FVSATEGPATTRIARGLAPNLAFVRAQNEISPAIRHCYLVCEERDKVDWLRKVLRGL 237

Query: 493 EEKKESNF---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             ++   F    +  ER     EH   S+A +HG      ++  +D F+ G  + LIA+ 
Sbjct: 238 APERALVFVHRGASAERMAERLEHHQLSVADLHGAHDKFQRQDALDDFRKGKAQTLIASD 297

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +   G+D+    +++  +        LH+  GR GR
Sbjct: 298 IAARGLDIFGVELVVNVDVPSQSRDYLHRA-GRTGR 332


>gi|307946857|ref|ZP_07662192.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
 gi|307770521|gb|EFO29747.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
          Length = 471

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 149/352 (42%), Gaps = 48/352 (13%)

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++ K+L  +  S    PT  Q  AI  +L+    +  +L I Q   G+GKT    + M  
Sbjct: 8   LSDKVLSAVDASGYTEPTAIQAGAIPHVLE----RRDVLGIAQ--TGTGKTASFTLPMLT 61

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q  E  +KY  N ++ V ++ G +    + K L+R
Sbjct: 62  LLEKGRARARMPRTLILEPTRELAAQVQENFEKYGTNHKLNVALLIGGVSFGEQDKKLDR 121

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-L 424
                  ++I T     D  +  KL+L     +++DE  R        +      P +  
Sbjct: 122 ----GTDVLIATPGRLLDHFERGKLLLQGVEVLVIDEADR--------MLDMGFIPDIER 169

Query: 425 LMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEG 482
           +    P  R TL  ++    +I ++TE    + P +  +   +   E I   L+    + 
Sbjct: 170 ICKLIPFTRQTLFFSATMPPEIQRLTETFL-QNPARVEVARTSSTSENISHYLRAAEGKD 228

Query: 483 KKAYWICPQIEEKKE---------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            +   +  ++ E  E         +  R +   F SL  H   S+  +HG M    + ++
Sbjct: 229 YEKRAVLRELLEGAEDLNNAIVFCNRKRDISTLFRSLERH-GYSVGSLHGDMDQRTRMTM 287

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +D+FK GT KLLIA+ V   G+D+ + S +   +        +H++ GR GR
Sbjct: 288 LDNFKKGTIKLLIASDVAARGLDIPEVSHVFNYDVPSHAEDYVHRI-GRTGR 338


>gi|163738737|ref|ZP_02146151.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
 gi|161388065|gb|EDQ12420.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
          Length = 713

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 155/378 (41%), Gaps = 55/378 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +AMA  +    +         A+++AP   LA Q   E    Y +
Sbjct: 49  LVSAQTGSGKTVGFGLAMAPTLLGDAEKLDRADLPLALVIAPTRELALQVKRELGWLYAE 108

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILV 398
               +V  + G M     R+ALER     AHI++ T    +D I        Q   ++L 
Sbjct: 109 AGAHVVSTV-GGMDMRDERRALER----GAHIVVATPGRLRDHIMRGSINLSQVRAVVLD 163

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE---KPAGR 455
             DE    G ++ L+          +L  +    RTL+ ++     I+++ E   K   R
Sbjct: 164 EADEMLDLGFREDLEF---------ILGESPEDRRTLMFSATVPTGIARLAETYLKDHQR 214

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSLH 511
             IKTV       D   + L V   + + A     +  E   +    N R+VV R  +  
Sbjct: 215 --IKTVAEASQHADIEYQMLAVAQRDVENAVINVLRFHESPNAIVFCNTRAVVNRMTTRL 272

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            +   S+  + G +S  ++ + + S ++G  ++ +AT V   GID+    ++I     H 
Sbjct: 273 SNRGFSVVALSGELSQAERSNALQSLRDGRARVCVATDVAARGIDLPKLDLVI-----HA 327

Query: 572 GLAQLHQL----RGRVGR-GEEISSCILLYHPPLSKNSYTRL--SVLKNTEDGFLIAEED 624
            L   H+      GR GR G +  S +++  PP +K    RL  S     E     + +D
Sbjct: 328 DLPSSHETLLHRSGRTGRAGRQGVSALIV--PPKAKGKALRLLRSAKITAETSPAPSADD 385

Query: 625 LKQRKEGEILGIKQSGMP 642
           ++ R    +LG K    P
Sbjct: 386 VRTRDFERLLGDKAWSEP 403


>gi|290989782|ref|XP_002677516.1| DEAD/DEAH box helicase [Naegleria gruberi]
 gi|284091124|gb|EFC44772.1| DEAD/DEAH box helicase [Naegleria gruberi]
          Length = 535

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 144/357 (40%), Gaps = 47/357 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q+ ++  I+   + K  M+   Q   GSGKT   L+ +  A+   G          
Sbjct: 128 PTPIQKHSMPAIV---TSKRDMMACAQ--TGSGKTAAFLLPIINALLKSGIHKDKRRFAP 182

Query: 323 -----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                +AVI+AP   L QQ Y+  +K+   T +   ++ G     ++ K LER       
Sbjct: 183 NKGNPKAVILAPTRELCQQIYDECRKFIFQTYLKTVVVYGGASSGYQMKQLER----GVD 238

Query: 378 IIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I++GT     D IQ  KL +     +++DE  R      L +  +     ++  +  P P
Sbjct: 239 ILVGTPGRMNDFIQREKLDMSGVQYLVLDEADRM-----LDMGFEPQIRSIVEGSGMP-P 292

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI----DEVIERLKVVLSEGKKAYWI 488
           +   LT L      K T+K A       + + +  I    D + +    V   GK+   +
Sbjct: 293 KGDRLTLLYSATFPKETQKLALDFLHDELFVQVGIIGGTTDNITQSFYQVDRRGKQDKLV 352

Query: 489 CPQIEEKKESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
               E+K+E          +S  +R   L        ++IHG      +E  +  FK+G 
Sbjct: 353 EVLTEKKEEREKTLVFVQQKSTCDRIYELLTPLGFKCSVIHGDKDQRSRERSLRQFKDGY 412

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             +L+AT V   G+D+   + +I  +      + +H++ GR GR   +      + P
Sbjct: 413 TNILVATDVAARGLDIEKVAHVINYDLPKEIDSYIHRI-GRTGRVGNLGIATAFFDP 468


>gi|254477171|ref|ZP_05090557.1| primosomal protein N', putative [Ruegeria sp. R11]
 gi|214031414|gb|EEB72249.1| primosomal protein N', putative [Ruegeria sp. R11]
          Length = 731

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 19/169 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T+ Q +A   + + ++       +L+G  GSGKT V L A+AAA+ AG QA+++ P I +
Sbjct: 198 TEDQAAAAARLGEGVASGRYGTTLLKGVTGSGKTEVYLEAVAAALRAGRQALVLLPEIAL 257

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
            A    EF+K+  Q                 RR+    +  G+A ++IG   ALF   + 
Sbjct: 258 TA----EFLKRVEQRFGATPAEWHSGATMTERRRVWRMVGQGKAQLVIGARSALF---LP 310

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKA----------TAPHVLLMTATP 430
           Y  L L+IVDE+H    +Q   +   A           +  V+L +ATP
Sbjct: 311 YQNLGLIIVDEEHDTSYKQDDGVCYNARDMAVLRAAMCSAQVVLASATP 359


>gi|146340507|ref|YP_001205555.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
 gi|146193313|emb|CAL77329.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
          Length = 476

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 144/362 (39%), Gaps = 58/362 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI  +L     +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 23  TPTPIQEQAIPHVLA----RRDVLGIAQ--TGTGKTAAFVLPMLTILEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   +Y    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDAKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +   L+L     +++DE  R        +      P +  +    P  R TL  T
Sbjct: 133 LLDHTERGGLLLTGVELLVIDEADR--------MLDMGFIPDIERICKLVPFTRQTLFFT 184

Query: 439 SLGDIDISKITE-------KPAGRKPIKTVI------IPINR----IDEVIERLKVVLSE 481
           +    +I +IT+       K    KP  T +      +P  R      EV+ RL     +
Sbjct: 185 ATMPPEIRRITDAFLHNPQKVEVSKPATTAVTVTQLQVPSGREAHQKREVLRRLLREAKD 244

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            K A   C        +  R V     SL +H   S+  +HG M    + + +D F+ G 
Sbjct: 245 LKNAIIFC--------NRKRDVAIVHKSLQKH-GFSVGALHGDMDQSARMAALDQFRKGE 295

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             LL+A+ V   G+D+ + S +   +  H     +H++ GR GR     + I +  PP  
Sbjct: 296 LPLLVASDVAARGLDIPEVSHVFNFDVPHHSDDYVHRI-GRTGRAGRTGTAISIVSPPDQ 354

Query: 602 KN 603
           K+
Sbjct: 355 KS 356


>gi|3023082|gb|AAC12642.1| transcription-repair coupling factor [Synechococcus sp. PCC 7002]
          Length = 162

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 1/107 (0%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + LL +  Q  +  GI    +    Q++  + P+  T  Q  A++DI +D+     M R+
Sbjct: 46  VDLLKIYAQRAEMKGITYPSDAPWQQEMEDSFPYQATPDQLKAVQDIKRDLESDRPMDRL 105

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIGILAQQHYEFIKK 343
           + GDVG GKT VA+ A+   V  G  Q  ++AP  IL QQHY  +K+
Sbjct: 106 VCGDVGFGKTEVAIRAIFKVVTGGHKQVALLAPTTILTQQHYHTLKE 152


>gi|223590207|sp|A5DE68|FAL1_PICGU RecName: Full=ATP-dependent RNA helicase FAL1
 gi|190345565|gb|EDK37471.2| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 397

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 144/337 (42%), Gaps = 49/337 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P+  Q  AI  I++          I Q   G+GKT    I + ++++      QA++++
Sbjct: 46  APSAIQSRAIMQIIRGRDT------IAQAQSGTGKTATFSIGILSSIDTKSKDCQALVLS 99

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ    I+       +      G        K L++   GQ HII GT     D
Sbjct: 100 PTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKKLQQ---GQ-HIISGTPGRVLD 155

Query: 389 SIQYYKLI-----LVIVDEQHRF---GVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLT 438
            I+   ++     ++++DE       G ++++    K       V++++AT  P  L +T
Sbjct: 156 MIKRRNIMPRHVKMLVLDEADELLTKGFKEQIYEIYKTLPAGAQVVVVSATLTPEVLEMT 215

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW----ICPQIEE 494
           +       K T  P        V I + R D  ++ +K    + +K  W    +C   + 
Sbjct: 216 N-------KFTSDP--------VKILVKRDDVTLKGIKQYYIQCEKEDWKFDTLCDLYDN 260

Query: 495 KKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +    F +   + N L      S   +A +HG M   D++S+M  F++G+ ++LI+T
Sbjct: 261 LTITQAVIFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFRSGSTRVLIST 320

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            V   GIDV   S++I  +        +H++ GR GR
Sbjct: 321 DVWARGIDVQQVSLVINYDLPLDKENYVHRI-GRSGR 356


>gi|255008934|ref|ZP_05281060.1| ATP-independent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 477

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 126/317 (39%), Gaps = 31/317 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    GSGKTL  L+ +  ++ A   G QAV++ P   LA Q  +  K     T+    
Sbjct: 73  ILLSPTGSGKTLAFLLPLVGSLRADVKGVQAVVLVPSRELALQIEQVFK--AMGTEFKAM 130

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
              G  P     + ++ +   Q  +IIGT     D     +     + L+++DE  +   
Sbjct: 131 SCYGGRPAMEEHRTMKGM---QPEVIIGTPGRMNDHLSKQNFDASTVSLLVIDEFDKCLE 187

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLG-DIDISKITEK-PAGRKPIKTV 461
           FG Q+ +   + Q        L +AT        T L   I +  +T      R  +  V
Sbjct: 188 FGFQEEMATVIGQLPDLKRRFLTSATDAEEIPQFTGLNRTIKLDFLTNDVEESRLRLMKV 247

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           + P     E + +L   L       +           N R  V+R ++L      S    
Sbjct: 248 VSPAKDKIETLYKLLCTLGSSSSIVF----------CNHRDAVDRVSALLTEKGVSNERF 297

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG M   D+E  +  F+NG+C +L++T +   G+D+ +   II  +      A  H+  G
Sbjct: 298 HGGMEQPDRERALYKFRNGSCPVLVSTDLAARGLDIPEVEHIIHYHIPVNEEAFTHR-NG 356

Query: 582 RVGRGEEISSCILLYHP 598
           R  R +   +  L+ +P
Sbjct: 357 RTARWDATGTSYLILNP 373


>gi|153855353|ref|ZP_01996502.1| hypothetical protein DORLON_02516 [Dorea longicatena DSM 13814]
 gi|149752173|gb|EDM62104.1| hypothetical protein DORLON_02516 [Dorea longicatena DSM 13814]
          Length = 742

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 20/202 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T+ Q++AI+   +D  Q  R   +L G  GSGKT V +  +   +  G QA+++ P I +
Sbjct: 206 TEEQQAAIRTFSKDYEQGIRKTYLLYGVTGSGKTEVYMEMIDKVLSEGRQAIVLIPEIAL 265

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F  ++       V I+   M Q  R   +ER+  G+  I+IG   ALF     
Sbjct: 266 TYQTVMRFYTRFGGR----VSILNSRMSQGERYDQMERVKKGEVDIMIGPRSALF---TP 318

Query: 392 YYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           + +L L+++DE+H          RF  ++      +     V+L +ATP          G
Sbjct: 319 FERLGLIVIDEEHEPTYKSEQVPRFHARETAIERARMEGASVVLGSATPSLEAFYACECG 378

Query: 442 DIDISKITEKPAGRKPIKTVII 463
              + ++  +  G++ +  V +
Sbjct: 379 RYQMLRLRNR-TGKQALPEVYV 399


>gi|126668612|ref|ZP_01739565.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter sp.
           ELB17]
 gi|126626942|gb|EAZ97586.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter sp.
           ELB17]
          Length = 457

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 142/321 (44%), Gaps = 46/321 (14%)

Query: 302 VGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITG 357
            GSGKT    + LI      +   Q++++ P   LA Q  + +++  +    I +  + G
Sbjct: 48  TGSGKTAAFGIGLIEHVKPKQFSVQSLVLCPTRELADQVAKALRELARARDNIKILTLCG 107

Query: 358 NM---PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--- 406
            +   PQ      +  +AHG AHI++GT     D +Q   L L     V++DE  R    
Sbjct: 108 GVSIGPQ------IGSLAHG-AHIVVGTPGRIADHLQKGTLKLDRVHTVVLDEADRMLDM 160

Query: 407 GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLG----DIDISKITEKPAGRKPIKT 460
           G Q+ ++  L+        LL +AT  P ++   S G     +D+   TEK      I  
Sbjct: 161 GFQEAVENILSHAPAQRQTLLFSAT-WPESIRKLSAGFQREPVDVRAQTEKM--NSDIAE 217

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           V   I+  ++    +  +LS+ +    +  C    +  E       + F++L        
Sbjct: 218 VFYEISG-NQRTRAIVALLSQHQPTSCLVFCAMKHQCDELAAELSQQGFSAL-------- 268

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG +   D++SV+  F N +C++L+AT V   G+D+   S+ ++ NAE  G  ++H 
Sbjct: 269 -ALHGDLEQRDRDSVLVRFANQSCQVLVATDVAARGLDI--KSLPLVVNAEPAGDPEIHT 325

Query: 579 LR-GRVGRGEEISSCILLYHP 598
            R GR GR  E    + L  P
Sbjct: 326 HRIGRTGRAGEQGLAVTLCSP 346


>gi|295101481|emb|CBK99026.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           L2-6]
          Length = 395

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 148/342 (43%), Gaps = 43/342 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I +   G+GKT    I +A  ++      QAVI+AP   LAQQ  E +   T      Q+
Sbjct: 42  IAKAPTGTGKTCAFGIPVAEHIDPALKAPQAVILAPTRELAQQIAEELTGLTYFMPEVQV 101

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY--------KLILVIVDE 402
           +      NM      K  +R+A G   I++ T     D  +++        +++L   DE
Sbjct: 102 VCVYGGANM-----EKQAKRLAEG-CQIVVATPGRLMDHYKHHNIDLDHVTQVVLDEADE 155

Query: 403 QHRFGVQQRLK-LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKP--AGRKPI 458
               G  + +K +     A   L M +  I R ++ +  +   D  +IT +P    +  I
Sbjct: 156 MLNMGFYKDVKHIIGLMKARKSLSMFSATISREVMDIGWMYQKDAEEITVQPKEESQPKI 215

Query: 459 KTVIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
              ++  +  +++ +  ++++ EG K+    C       ++ F +     N L      S
Sbjct: 216 TQYMLETSGRNKLSDLAQIIIGEGYKRVMVFC-------DTKFNTAA-LANQL-ARLGFS 266

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA----EHFGL 573
           +  +HG +S  ++  +M +F++G   +L+AT V   GIDV D   +I  +     EH+  
Sbjct: 267 VDCLHGDLSQNERNRIMQNFRDGKLNVLVATDVAARGIDVSDVDAVINYDVPGDNEHY-- 324

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
              H++ GR GR ++     L Y P   K     L + +NT+
Sbjct: 325 --THRI-GRTGRAKKEGVSYLFYVPEEKKRVQELLRLTRNTD 363


>gi|313146676|ref|ZP_07808869.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135443|gb|EFR52803.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 443

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 126/317 (39%), Gaps = 31/317 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    GSGKTL  L+ +  ++ A   G QAV++ P   LA Q  +  K     T+    
Sbjct: 39  ILLSPTGSGKTLAFLLPLVGSLRADVKGVQAVVLVPSRELALQIEQVFK--AMGTEFKAM 96

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
              G  P     + ++ +   Q  +IIGT     D     +     + L+++DE  +   
Sbjct: 97  SCYGGRPAMEEHRTMKGM---QPEVIIGTPGRMNDHLSKQNFDASTVSLLVIDEFDKCLE 153

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLG-DIDISKITEK-PAGRKPIKTV 461
           FG Q+ +   + Q        L +AT        T L   I +  +T      R  +  V
Sbjct: 154 FGFQEEMATVIGQLPDLKRRFLTSATDAEEIPQFTGLNRTIKLDFLTNDVEESRLRLMKV 213

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           + P     E + +L   L       +           N R  V+R ++L      S    
Sbjct: 214 VSPAKDKIETLYKLLCTLGSSSSIVF----------CNHRDAVDRVSALLTEKGVSNERF 263

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG M   D+E  +  F+NG+C +L++T +   G+D+ +   II  +      A  H+  G
Sbjct: 264 HGGMEQPDRERALYKFRNGSCPVLVSTDLAARGLDIPEVEHIIHYHIPVNEEAFTHR-NG 322

Query: 582 RVGRGEEISSCILLYHP 598
           R  R +   +  L+ +P
Sbjct: 323 RTARWDATGTSYLILNP 339


>gi|149199425|ref|ZP_01876461.1| recQ [Lentisphaera araneosa HTCC2155]
 gi|149137503|gb|EDM25920.1| recQ [Lentisphaera araneosa HTCC2155]
          Length = 770

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 126/317 (39%), Gaps = 51/317 (16%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK+L   +    A+   G  V+++P+  L +   + +K    N  I  E I     Q
Sbjct: 40  TGAGKSLCYQLP---ALVRPGYTVVISPLIALMKDQVDALK----NKGIAAEYINSTQSQ 92

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQRLK 413
           + +   L +   G   ++           F+D ++ Y    ++VDE H   ++G   R  
Sbjct: 93  SMQNAILMQAQQGMIKLLYVAPERMRSQAFRDLLKDYPPESLVVDEAHCISQWGHDFRPD 152

Query: 414 LT------QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA--------GRKPIK 459
            T      +K     +   TAT  PR          DI K   +PA         R  + 
Sbjct: 153 YTRLGESAEKLGIKQICAFTATATPRVRE-------DIKKQLHRPAMDVVVTGFARPNLS 205

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
             I   ++ D+ +E+++ ++ + K     C        +  ++V E  + L      S+ 
Sbjct: 206 LSIEDCSKKDQKLEKIRELMEDRKPTIIYC--------ATRKAVEEVMDGL------SVR 251

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG MSD D+    D F      +L AT    +GID  D   +I  N     L   +Q 
Sbjct: 252 GYHGGMSDKDRNDAQDYFLYDPNPVLAATNAFGMGIDRADIRQVIHYNFPG-ALEAYYQE 310

Query: 580 RGRVGRGEEISSCILLY 596
            GR GR  E S+C+LL+
Sbjct: 311 VGRAGRDGEQSTCVLLF 327


>gi|320103060|ref|YP_004178651.1| DEAD/DEAH box helicase domain-containing protein [Isosphaera
           pallida ATCC 43644]
 gi|319750342|gb|ADV62102.1| DEAD/DEAH box helicase domain protein [Isosphaera pallida ATCC
           43644]
          Length = 422

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 143/309 (46%), Gaps = 38/309 (12%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + LI M    + G QA+I+AP   L QQ     ++  +   ++V 
Sbjct: 54  IGQAKTGTGKTAAFSLPLIEMHEPGQPGPQAIILAPTRELVQQICGEFERLARGRDLVVR 113

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P     + L  +A G   +++GT     D +Q   + L     V++DE  R   
Sbjct: 114 GIYGGEPI---ERQLRSLAKG-VDVVVGTPGRVIDHLQRGTMSLEGVYHVVLDEADRMLD 169

Query: 407 -GVQQRL-KLTQKATAPH-VLLMTATPIPRTLVLTSL---GDIDISKITEKPAGRKPIKT 460
            G +  + ++ +K   PH  LL++AT  P    L +      ++++   ++P+  K ++ 
Sbjct: 170 IGFRPDIERILRKVPQPHQTLLLSATLSPEVRRLAARYMHEPVELNLSRDEPSVEKIVQK 229

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            I P++   ++   L ++  E  +   +  + +   +   + +  R+          +A 
Sbjct: 230 YI-PVDHNRKMELLLHLLELEKPRQCIVFCRTKRGADKLAQRLARRY--------PGVAT 280

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQL 576
           IHG +    +  VM  F++G+  +L+AT V+  GIDV + S +    I ++ E++    L
Sbjct: 281 IHGDLPQTARNRVMRGFRDGSIPILVATDVVGRGIDVEEISHVVNYDIPDDPENY----L 336

Query: 577 HQLRGRVGR 585
           H++ GR GR
Sbjct: 337 HRI-GRTGR 344


>gi|298291272|ref|YP_003693211.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296927783|gb|ADH88592.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 619

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 135/328 (41%), Gaps = 44/328 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAA---------AVEAGGQAVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +AMA          A     QA+++AP   LA Q   EF   Y  
Sbjct: 37  LVSAQTGSGKTVAYGLAMAETLLGVSERFAAATVPQALVVAPTRELALQVQREFAWLYAA 96

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILV 398
               IV  + G  P+       +R+ +  AH+++GT    +D ++  +L        +L 
Sbjct: 97  TGARIVSCVGGMDPRQE-----QRLLNQGAHVVVGTPGRLRDHLERGRLDLSALRVAVLD 151

Query: 399 IVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
             DE    G ++ L+    AT P    LL +AT         + G   +++  ++ A R 
Sbjct: 152 EADEMLDLGFREDLEFILDATPPERRSLLFSAT--------MARGITTLARRYQRDALR- 202

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKA------YWICPQIEEKKESNFRSVVERFNSL 510
            I+         D     ++V  +E + A      Y+  P        N R  V R +++
Sbjct: 203 -IEVASAEGGHADIEYRTMRVAPTEVEHAVVNVLRYYDTPSA--IVFCNTREAVRRMHAM 259

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            +    S   + G +S  ++   + + ++G  ++ +AT V   GID+ +  ++I  +  +
Sbjct: 260 LQERQFSAVALSGELSQNERNHALQALRDGRARVCVATDVAARGIDLPNLGLVIHADLPN 319

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP 598
              +  H+  GR GR       +LL  P
Sbjct: 320 DAESLQHR-SGRTGRAGRKGVSVLLVPP 346


>gi|254473978|ref|ZP_05087371.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
 gi|211956867|gb|EEA92074.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
          Length = 483

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 159/366 (43%), Gaps = 41/366 (11%)

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           E  +A+ ILR +     ++     ++++  M +   +L I Q   G+GKT   ++ +   
Sbjct: 6   EAGLAEPILRAVKEEGYEAPTPIQREVIPLMKEGEDILGIAQ--TGTGKTAAFVLPLLTR 63

Query: 318 VEAG--------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +            +A+I+AP   LA Q  E ++ Y Q     V +I G +    + +AL 
Sbjct: 64  LAEDRKKPAPHTCRALILAPTRELASQIAESVRTYGQFIGPSVAVIFGGVKPGPQLRALS 123

Query: 370 RIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV- 423
           +       I+I T    +D      I+      V++DE       Q L L     AP + 
Sbjct: 124 K----GLDIVIATPGRLEDHMSTGGIKLDATTTVVLDE-----ADQMLDL---GFAPAIR 171

Query: 424 -LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSE 481
            +L     + +T++L++   I I  +  K     P +  + P++R I+++ + ++ + S 
Sbjct: 172 RILGKLPKVRQTVLLSATMPIQIRNLA-KEFLSNPHEISVAPVSRPIEKIDQSVRFLNSS 230

Query: 482 GKKAYWICPQIEEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            K+A  +    E+  E     +  +   +R +   E    S A IHG  S  ++E  +D 
Sbjct: 231 SKRAALLDILSEDDIERAIVFTRTKRGADRVSGHLEKAGLSSAAIHGNKSQRNREKSLDG 290

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           FKNG  K+L+AT +   GID+   S ++     +   A +H++ GR  R    G  +S C
Sbjct: 291 FKNGRIKILVATDIAARGIDIDGVSHVVNYELPNVPEAYVHRI-GRTARAGKSGVAVSLC 349

Query: 593 ILLYHP 598
                P
Sbjct: 350 DATEQP 355


>gi|294083671|ref|YP_003550428.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663243|gb|ADE38344.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 464

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 151/340 (44%), Gaps = 51/340 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDV--GSGKT------LVALIAMAAAVEAGGQ 323
           SPT  QE +I  IL        M R + G    G+GKT      ++ ++A   A     +
Sbjct: 23  SPTPIQEKSIPIIL--------MGRDILGSAQTGTGKTASFTLPMIDILASGRAKARMPR 74

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           ++I+AP   LA Q  E  +K++ + ++ + ++ G +  + +  AL++       ++I T 
Sbjct: 75  SLILAPTRELAAQVAESFEKFSTHHKLNMALLIGGVSFSDQNTALDK----GVDVLIATP 130

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLV 436
               D  +  K++L     +++DE  R        +      P V  ++    P+ +TL 
Sbjct: 131 GRLLDHFERGKVMLNDVKVLVIDEADR--------MLDMGFIPDVERIVSLLPPLRQTLF 182

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW-ICPQIEEK 495
            ++    DI KI+ K      I  V  P +  D V + L+    + K+A      ++E  
Sbjct: 183 FSATLSDDIHKISHKFVSNPKIIEVAPPASTADTVAQHLQWTDVKSKRAVLRDLLRVETV 242

Query: 496 KES-----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           K +       R +     SL +H  S++A+ HG M+   +   +D FK G   LLIA+ V
Sbjct: 243 KNAVIFCNRKRDISTLVKSLTKHEFSAVAM-HGDMTQSARLEALDKFKKGEVPLLIASDV 301

Query: 551 IEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRG 586
              G+D+   S +    +  NAE +    +H++ GR GR 
Sbjct: 302 AARGLDIAGLSHVFNFDVPMNAEDY----VHRI-GRTGRA 336


>gi|330900813|gb|EGH32232.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 459

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 187/428 (43%), Gaps = 57/428 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  ++   I V
Sbjct: 45  IAQAKTGSGKTAAFGIGLLNPINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 105 LTLCGGVSFGPQIGSLE---HG-AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRM- 159

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++     I +++ K   R P +TV +   
Sbjct: 160 ------LDMGFYDAIADIIEQTPKRRQTLLFSATYPAGIKQLSSKFM-RDP-QTVKVEAL 211

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAI 520
             D  IE++   +S  ++   +   +   + ++   F    ++   + +H T+   S   
Sbjct: 212 HADSQIEQIFYEISPEQRLEAVVKVLGHFRPASCVAFCFTKQQVQEVVDHLTAKGMSAVG 271

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++ V+  F N +  +L+AT V   G+D +DA  ++I N E    +++H  R
Sbjct: 272 LHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVI-NVELARDSEIHIHR 329

Query: 581 -GRVGRGEEISSCILLYHP---------------PLSKNSYTRLSVLKNTE-----DGFL 619
            GR GR  E    + L  P               PL+   Y RLS+ +  +         
Sbjct: 330 VGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQQYDRLSIKEGGKLLPAMTTLC 389

Query: 620 IAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAKHILTQDPDLTS 675
           I      + + G+ILG    ++G+P   + +  + D  + + + R  AK  L +  +   
Sbjct: 390 IGSGRKDKLRPGDILGALTGEAGIPGTQVGKIAIFDFQAYVAVERSMAKQALERLNN-GK 448

Query: 676 VRGQSIRI 683
           ++G+S+R+
Sbjct: 449 IKGKSLRV 456


>gi|119480453|ref|XP_001260255.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|134034069|sp|A1DG51|DBP3_NEOFI RecName: Full=ATP-dependent RNA helicase dbp3
 gi|119408409|gb|EAW18358.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 503

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 155/371 (41%), Gaps = 57/371 (15%)

Query: 300 GDVGSGKTLV-ALIAMAAAVEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            + GSGKTL   L  +   +++G          AVI++P   LA Q Y+ + K+  +  I
Sbjct: 129 AETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPTRELAMQIYDQLSKFGASVDI 188

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR 405
            V  I G + +  +R+AL+      A I++ T    +D     S+   K+  +++DE  R
Sbjct: 189 RVTCIYGGVKKDEQREALK-----TAAIVVATPGRLKDLQNDGSVDLGKVKYLVLDEADR 243

Query: 406 F---GVQQRLK---LTQKATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKP 457
               G +Q +K    +   +    ++ TAT  P  R L  T +       I   P+    
Sbjct: 244 MLDKGFEQDIKDIIRSMPDSKRQTVMFTATWPPSVRDLAATFMTSAVTVTIGGDPSADPR 303

Query: 458 IKTVIIPINRIDEVIE---------RLKVVLSEGKKAYWICPQIE----EKKESNFRSVV 504
             T      RI +V+E         RL  +L+  ++   +C ++      KKE+      
Sbjct: 304 ANT------RIKQVVEVVKPQEKEARLVQLLNRSQRGAAVCDKVLVFCLYKKEA------ 351

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            R   L       +A IHG ++  ++   +++FK G   +L+AT V   G+D+    ++I
Sbjct: 352 VRVERLLRTKNFKVAGIHGDLNQHERFKSLEAFKTGAATVLVATDVAARGLDIPSVKLVI 411

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK----NTEDGFLI 620
                      +H++ GR GR       I L+       S   ++VL+    +  D  L 
Sbjct: 412 NVTFPLTVEDYVHRI-GRTGRAGADGHAITLFTETDKAQSGALINVLRAAKQDVPDALLK 470

Query: 621 AEEDLKQRKEG 631
               +K+++ G
Sbjct: 471 FGTTVKKKQHG 481


>gi|225849264|ref|YP_002729428.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644065|gb|ACN99115.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 397

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 158/375 (42%), Gaps = 73/375 (19%)

Query: 264 KILRNIPFS-PTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           K L ++ +S PT+ QE AI  +L  +D+        + Q   G+GKT    I +  +V  
Sbjct: 17  KSLEDLGYSKPTEIQEKAIPAVLSGKDL--------VAQAQTGTGKTAAFGIPIVESVNT 68

Query: 321 GG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                QA+++ P   LA Q  + IK   +N ++ V  + G     H+   ++ +  G   
Sbjct: 69  KQKKIQALVLVPTRELAIQVAKEIKDLGKNKKVFVLSVYGGKSMKHQ---IDFLKKGNDV 125

Query: 378 IIIGTHALFQDSIQ--YYKLI---LVIVDEQHR---------------FGVQQRLKLTQK 417
           +I+GT    +D ++  + KL    + ++DE  R               +  + R  L   
Sbjct: 126 VIVGTPGRVKDLLERGFLKLDNVKMFVLDEADRMLEMGFIEDIEDIMSYLPEDRQNLLFS 185

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII---PINRIDEVIER 474
           AT P  +L  A             D    K+       + IK +I    P N+ +++IE 
Sbjct: 186 ATMPKEILELAQEFLNE-------DYQTIKVKPDEITVEKIKQIIYRVDPKNKFNKLIE- 237

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKE 531
              VLS+ +    I           F       + L E  +    S++ IHG  S   +E
Sbjct: 238 ---VLSQNQAEKTII----------FTQTKLEADQLSEDLSKEGFSVSAIHGDFSQKKRE 284

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGRGE 587
           +V+ +F+ G  K+L+AT V   G+D+    ++I     +NAE +    +H++ GR GR  
Sbjct: 285 TVLHNFRTGKLKILVATDVAARGLDIKGVELVINYGLPKNAESY----VHRI-GRTGRAG 339

Query: 588 EISSCILLYHPPLSK 602
           +  + I +  P   K
Sbjct: 340 KEGTAISIPTPSEDK 354


>gi|170692804|ref|ZP_02883966.1| ATP-dependent DNA helicase, RecQ family [Burkholderia graminis
           C4D1M]
 gi|170142460|gb|EDT10626.1| ATP-dependent DNA helicase, RecQ family [Burkholderia graminis
           C4D1M]
          Length = 577

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 143/357 (40%), Gaps = 66/357 (18%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILA 334
            QE  I+ +LQ       M        G+GK+L   +    A+   G  ++++P I ++ 
Sbjct: 17  GQEDIIRSVLQHRDTLATM------PTGAGKSLCYQLP---ALHLEGTTLVVSPLIALMK 67

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDS 389
            Q  + +        I   ++   +     R+AL+RIA G + I+  T        F ++
Sbjct: 68  DQADKLLA-----AGIDCTLVNSTLKSRAEREALQRIAAGDSGIVFVTPERLAQPAFIET 122

Query: 390 IQYY---KLILVIVDEQH---RFGVQQRLKLTQKATA------PHVLLMTATPIPRTLVL 437
           ++     ++ LV+VDE H    +G   R    + A A      P VL +TAT   R    
Sbjct: 123 LRARPENRVGLVVVDEAHCVSHWGHDFRPAFLEIAAAVKALGQPPVLALTATATQRV--- 179

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                  I  I    A R P+  V     R +     ++V  + GK         + ++ 
Sbjct: 180 -------IDDIVHSLALRDPL-VVRTGTYRENLRYRVVQVSTAGGKDGAARAMAAKREQL 231

Query: 498 SN-----------FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           S            + + V   + +H   T    S++  HGRMS   +E   + F +G  +
Sbjct: 232 SKLIGSLGGAGIVYAATVRDVDRIHGWLTEAGESVSRYHGRMSAAAREEAQEQFMSGATR 291

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHF----GLAQLHQLRGRVGRGEEISSCILLY 596
           L+IAT    +GID  D   +I     H+     L   +Q  GR GR  E + C+LL+
Sbjct: 292 LMIATNAFGMGIDKADIRFVI-----HYQIPGSLDAYYQETGRAGRDGEPADCVLLF 343


>gi|114569451|ref|YP_756131.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris
           MCS10]
 gi|114339913|gb|ABI65193.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
          Length = 787

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 134/334 (40%), Gaps = 62/334 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT    +AMA  +              A+I+AP   LA Q   E    Y +
Sbjct: 41  LVSAQTGSGKTAAFGMAMAKTLLGDDDQFNRPDLPMALIVAPTRELALQVQRELAWLYGE 100

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILV 398
               I   + G  P+A R KALER      HI++GT    +D I        Q   ++L 
Sbjct: 101 ARGQIASCVGGMDPRAER-KALER----GCHIVVGTPGRLRDHIERGALDMSQLKAVVLD 155

Query: 399 IVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
             DE   FG ++ L+  L     +   LL +AT +PR +        DI++  +K A R 
Sbjct: 156 EADEMLDFGFREDLEYILDAAPASRRTLLFSAT-VPRAIA-------DIARRFQKDALR- 206

Query: 457 PIKTV---------------IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
            I TV               + P +R + +I  L+   +E  +A   C           R
Sbjct: 207 -ISTVSERGQHADIEYRALSVAPSDRENAIINVLRYYDAE--RAIIFC---------ATR 254

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             V R  +   +   +   + G ++  ++   + + ++G  ++ +AT V   GID+    
Sbjct: 255 EAVNRLAARFGNRGFAAVALSGELTQKERTHALQALRDGRARVCVATDVAARGIDLPGLE 314

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           ++I  +        LH+  GR GR      C ++
Sbjct: 315 LVIHADLPTNSDVLLHRS-GRTGRAGAKGVCAII 347


>gi|255726288|ref|XP_002548070.1| ATP-dependent RNA helicase DDX19B [Candida tropicalis MYA-3404]
 gi|240133994|gb|EER33549.1| ATP-dependent RNA helicase DDX19B [Candida tropicalis MYA-3404]
          Length = 496

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 159/368 (43%), Gaps = 55/368 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+K QE A+  +L +  +      I Q   G+GKT    + M + V+      Q + +AP
Sbjct: 129 PSKIQEKALPLLLSNPPKN----MIGQSQSGTGKTAAFSLTMLSRVDESIKSPQCLCLAP 184

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA+Q  E I    + T I  +++  +        ++ R A   + I++GT  +  D 
Sbjct: 185 TRELARQTLEVITTMGKFTNITTQLVVPD--------SIARGASVTSQILVGTPGVVNDL 236

Query: 389 ----SIQYYKLILVIVDEQHRFGVQQRL--------KLTQKATAPHVLLMTAT-PIP-RT 434
                I   K+ + ++DE       Q L        KL  K+T   ++L +AT P   R 
Sbjct: 237 MRRKQINPSKMKVFVLDEADNMLDAQGLGDQCVRVKKLLPKST--QLVLFSATFPTEVRN 294

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID---EVIERLKVVLSEGKKAYWICPQ 491
                + + +  ++ ++      IK + +  +      EV+  L  +L+ G    ++   
Sbjct: 295 YAERVVPNANSLELKQEELNVDGIKQLYMDCDSEKHKFEVLCELYGLLTIGSSIIFV--- 351

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
             EKKE+  +   +     H     + +I+HG +   D++ ++D F+ G  K+LI T V+
Sbjct: 352 --EKKETANQLYAKMKQEGH-----TCSILHGGLETADRDRLIDDFREGRSKVLITTNVL 404

Query: 552 EVGIDVVDASIIIIEN--AEHFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
             GID+   S+++  +   + FG       LH++ GR GR   +   I   H    K S+
Sbjct: 405 ARGIDIASVSMVVNYDLPTDKFGKPDPSTYLHRI-GRTGRFGRVGVSISFVH---DKRSF 460

Query: 606 TRLSVLKN 613
             L  +KN
Sbjct: 461 EILMAIKN 468


>gi|325579140|ref|ZP_08149096.1| primosome assembly protein PriA [Haemophilus parainfluenzae ATCC
           33392]
 gi|325159375|gb|EGC71509.1| primosome assembly protein PriA [Haemophilus parainfluenzae ATCC
           33392]
          Length = 729

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 33/209 (15%)

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPF-------SPTKSQESAIKDILQDMSQKNRM 294
           L  K + +EI +P   E K  Q+ L N P        +  K Q  A   ++    Q+   
Sbjct: 165 LKGKDYVEEIIVP--TEQKSWQQTLGNNPLVNLDNRLTLNKQQALAFSQLI---FQEGFN 219

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVE 353
           + +L+G  GSGKT + L  +   ++ G Q +++ P IG+  Q     ++++     + ++
Sbjct: 220 VWLLEGVTGSGKTEIYLQYIEEVLKKGKQVLVLVPEIGLTPQT----VRRFQARFNVEID 275

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR- 411
           ++  N+    R    ER   GQ+ I+IGT  ALF    Q+  L L+I+DE+H    +Q+ 
Sbjct: 276 VLHSNLNDTQRLNVWERARTGQSAIVIGTRSALF---TQFSDLGLIILDEEHDGSFKQQD 332

Query: 412 ----------LKLTQKATAPHVLLMTATP 430
                     + L QK   P +LL +ATP
Sbjct: 333 GWRYHARDLGIVLAQKLNIP-ILLGSATP 360


>gi|126659493|ref|ZP_01730626.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
 gi|126619227|gb|EAZ89963.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
          Length = 478

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 160/359 (44%), Gaps = 40/359 (11%)

Query: 258 EGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           E +I Q  L+ + F SPT+ QE AI  +L+          + Q   G+GKT    + +  
Sbjct: 12  EARINQ--LQTLGFESPTEIQEKAIPLLLEGHDV------LGQSQTGTGKTAAYSLPILE 63

Query: 317 AVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
            ++   +  QA+I+ P   LAQQ  E +K ++   ++ +  + G      + ++LER   
Sbjct: 64  QIDTRNSNVQALILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIRSLER--- 120

Query: 374 GQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHV 423
               I++GT     D ++  KL+L      ++DE       G    +K  L +   A + 
Sbjct: 121 -GVQIVVGTPGRVIDLLERKKLVLDSLRWAVLDEADEMLSMGFIDDVKTILRKTPDARNT 179

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
              +AT +PR      + D+ +++  + P      +T   P  RID+ +  +    S+ +
Sbjct: 180 ACFSAT-MPR-----EIRDL-VNQFLKSPVTVSVERTQAAP-TRIDQHLYMVPRGWSK-R 230

Query: 484 KAYWICPQIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           KA     +IE+ + +      +       S  +    S+   HG +S   +E ++  F++
Sbjct: 231 KALQPILEIEDPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFRD 290

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G  KL++AT +   G+DV + S +I  +        +H++ GR GR  +  + I L  P
Sbjct: 291 GKIKLVVATDIAARGLDVENLSHVINYDLPDNSETYIHRI-GRTGRAGKTGTAISLIEP 348


>gi|254460192|ref|ZP_05073608.1| ATP-dependent RNA helicase [Rhodobacterales bacterium HTCC2083]
 gi|206676781|gb|EDZ41268.1| ATP-dependent RNA helicase [Rhodobacteraceae bacterium HTCC2083]
          Length = 721

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 135/313 (43%), Gaps = 39/313 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV-EAGGQ--------AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  + E  G+        A+++AP   LA Q           
Sbjct: 52  LVSAQTGSGKTVAFGLAIAPTILEENGRFERAATPLALVIAPTRELALQVKREFDWLFAP 111

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDE 402
           T ++V    G M     R+ALER     AHI++ T    +D     +I    L  V++DE
Sbjct: 112 TGVVVASTVGGMDSRTERRALER----GAHIVVATPGRLRDHIMRGAIDLSALRAVVLDE 167

Query: 403 QHRF---GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGR--K 456
                  G  + L+           ++ ATP  R TL+ ++     I+K+ +K   +  K
Sbjct: 168 ADEMLDMGFSEDLEY----------ILDATPSERRTLMFSATVPRGIAKLAQKYQRKDTK 217

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSLHE 512
            ++T+       D     + V  S+ + A     +  E + +    N R++V R  +   
Sbjct: 218 RVETIGEGPQHADITYRAMTVAPSDTENAIINTLRYYEAQNAIVFANTRAMVARLTARFS 277

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   S+  + G +S  ++   + + ++G  ++ +AT V   GID+ +  ++I  +    G
Sbjct: 278 NRGFSVVSLSGELSQNERTHALQAMRDGRARVCVATDVAARGIDLPNLELVIHADLPSNG 337

Query: 573 LAQLHQLRGRVGR 585
              LH+  GR GR
Sbjct: 338 ETLLHR-SGRTGR 349


>gi|296535750|ref|ZP_06897913.1| ATP-dependent RNA helicase DeaD [Roseomonas cervicalis ATCC 49957]
 gi|296263919|gb|EFH10381.1| ATP-dependent RNA helicase DeaD [Roseomonas cervicalis ATCC 49957]
          Length = 411

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 142/339 (41%), Gaps = 47/339 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A  +         AG   A+++AP   LA Q   E    Y  
Sbjct: 40  LVSAQTGSGKTVAFGLALAPELLGEAERMPPAGAPLAIVVAPTRELALQVRAELSWLYAA 99

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILV 398
               +V  + G  P A RR     +A G AHI++GT     D +    L        +L 
Sbjct: 100 AGGRVVSCVGGMDPLAERRA----LAQG-AHIVVGTPGRLCDHLDRGNLRPEALRAVVLD 154

Query: 399 IVDEQHRFGVQQRLKLTQKATAPH---VLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
             DE    G ++ L++   A AP     LL +AT  P    L      D  +I+ K  G 
Sbjct: 155 EADEMLDLGFREELEMILGA-APEERRTLLFSATVPPEIERLAGHFQRDALRISAKAEGG 213

Query: 456 K----PIKTV-IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS- 509
           +      K V + P +    V+  L+  LS+  +A   C         + R+ V R  + 
Sbjct: 214 QHRDIAYKAVQVAPQDTERAVVNLLR--LSDSLRAIVFC---------STRAAVTRLQAN 262

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L E   S++A+  G +S  ++   + + ++G  ++ +AT V   GID+ D  ++I     
Sbjct: 263 LAERGFSAVAL-SGELSQAERSRALQALRDGRAQVCVATDVAARGIDLPDLGLVIHAELP 321

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
                 LH+  GR GR       +L+  PP  + +  RL
Sbjct: 322 KEPETMLHR-SGRTGRAGRKGISVLVV-PPNRRRTAERL 358


>gi|89070055|ref|ZP_01157386.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicola granulosus HTCC2516]
 gi|89044392|gb|EAR50530.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicola granulosus HTCC2516]
          Length = 680

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 160/381 (41%), Gaps = 42/381 (11%)

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAP 329
           +A+++ + D + +   L ++    GSGKT+   +A+A  + AG +         A+I+AP
Sbjct: 18  TAVQEAVTDPALEQADL-LVSAQTGSGKTVGFGLAIAPTLLAGEERMGPAAAPLALIVAP 76

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q    ++     T   V    G M     R+ALER     AHI++GT    +D 
Sbjct: 77  TRELAFQVRRELEWLYARTGAQVTSCVGGMDMRSERRALER----GAHIVVGTPGRLRDH 132

Query: 390 IQYYKLIL-----VIVDEQHR---FGVQQRLKLTQKATAPH---VLLMTATPIPRTLVLT 438
           IQ   L L     V++DE       G ++ L+    A AP     L+ +AT  P    L 
Sbjct: 133 IQRGSLELESIRAVVLDEADEMLDLGFREDLEFML-AAAPEDRRTLMFSATVPPMIATLA 191

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D  +++ +  G++            D   + +KV   + + A     +  + + +
Sbjct: 192 KHYQRDAVRVSTQSTGKQ----------HADIAYQAVKVAQQDAENAIINILRFHDAENA 241

Query: 499 ----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N R++V R  +   +   ++  + G +S  ++   + + ++G  ++ +AT V   G
Sbjct: 242 IVFANTRAMVARLTARFSNRGFAVVSLSGELSQNERTHALQAMRDGRARVCVATDVAARG 301

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           ID+ +  +++           LH+  GR GR        L+  P + K +   L   K +
Sbjct: 302 IDLPNLDLVVHAELPTNVEGLLHR-SGRTGRAGRKGISALVVPPKMVKRAERLLKWAKIS 360

Query: 615 EDGFLI-AEEDLKQRKEGEIL 634
            +     + ED+  R E  +L
Sbjct: 361 AEWITAPSAEDILARDEERLL 381


>gi|284047691|ref|YP_003398030.1| primosomal protein N' [Acidaminococcus fermentans DSM 20731]
 gi|283951912|gb|ADB46715.1| primosomal protein N' [Acidaminococcus fermentans DSM 20731]
          Length = 797

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 22/222 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLR--ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
           T+ Q++AI+ +  D +++NR  R  +LQG  GSGKT V L   A A++AG Q +++ P  
Sbjct: 264 TEEQQAAIQAV--DAARENREARTFLLQGITGSGKTEVYLRLAARALQAGQQVMVLVPEI 321

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSI 390
            L  Q    +K++       V +    +  + R     R+  GQA ++IG   A+F    
Sbjct: 322 ALTGQ---IVKRFKAWFGAGVAVAHSRLSASERGDVWSRMRSGQARVLIGVRSAVF---C 375

Query: 391 QYYKLILVIVDEQHRFGVQQR------LKLTQKATAPH----VLLMTATPIPRTLVLTSL 440
            +  L L+++DE+H    +Q        +L  +  A +    V+L +ATP   +  L   
Sbjct: 376 PFADLGLILIDEEHEGTYKQEERPSYHARLVAQYRAHYRKVPVVLGSATPDLESYYLAEK 435

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           G   + ++T +      +  V I ++  +E+ +  + VLSE 
Sbjct: 436 GGYTLLRLTHRARSGSHLPKVSI-VDMREELHQGNRTVLSEA 476


>gi|282600167|ref|ZP_05973223.2| ATP-independent RNA helicase DbpA [Providencia rustigianii DSM
           4541]
 gi|282566628|gb|EFB72163.1| ATP-independent RNA helicase DbpA [Providencia rustigianii DSM
           4541]
          Length = 476

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 154/357 (43%), Gaps = 68/357 (19%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           T  QE+A+  IL  QD+          Q   GSGKT    + +   ++A     Q++++ 
Sbjct: 46  TPIQEAALPAILAGQDVRA--------QAKTGSGKTAAFGLGLLQHIDAKNFNTQSLVLC 97

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA- 384
           P   LA Q       + +Y  N +I+   + G +P + +R +L   AH  AH+I+ T   
Sbjct: 98  PTRELADQVANELRRLARYIPNLKILT--LCGGVPFSVQRDSL---AHA-AHVIVATPGR 151

Query: 385 ----LFQDSIQYYKLILVIVDEQHR---------------FGVQQRLKLTQKATAPHVLL 425
               L ++++    L  +++DE  R               F   QR  L   AT P  + 
Sbjct: 152 LLDHLHKETVNLDHLQTLVLDEADRMLDMGFSDEIDAIISFAPHQRQTLLFSATWPESIA 211

Query: 426 MTATPI---PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
             +  I   P+T        I+I+ + E P     ++     + R D+ IE L+ +LS  
Sbjct: 212 DISQRIQNNPQT--------IEINSVNELP----DVEQQFYEVARHDK-IELLQKLLSRD 258

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           + A  +   I    + + ++V +  N   +    S+ ++HG M   D++  +  F NG+ 
Sbjct: 259 QPASCV---IFCNTKKDCQAVFDALNDSKQ----SVLVLHGDMEQRDRDQTLVRFANGSS 311

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
           ++L+AT V   G+D+    ++I  N E     ++H  R GR  R  +    I L  P
Sbjct: 312 RVLVATDVASRGLDIKALEMVI--NFELSWDPEVHVHRIGRTARAGQSGLAISLCSP 366


>gi|291563558|emb|CBL42374.1| replication restart DNA helicase PriA [butyrate-producing bacterium
           SS3/4]
          Length = 739

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 19/194 (9%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P +  + Q++A + +++D     R   +L G  GSGKT V +  +   +  G QA+++ P
Sbjct: 203 PVALNQEQKNAAETVIRDYDSGQRNTYLLYGITGSGKTEVYMELIDYVLRQGRQAIVLIP 262

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F +++       V I+   +    R +  ER A+G+  I+IG   ALF 
Sbjct: 263 EISLTYQTVMRFYRRFGNR----VGIMNSRLSAGERYEQSERAANGEIDIMIGPRSALF- 317

Query: 388 DSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
               +  L L+I+DE+H          R+  ++  K+    +   V+L +ATP   +  L
Sbjct: 318 --TPFPDLGLIIIDEEHEGAYKSETAPRYDAREVAKVRADMSRAAVVLGSATPSVESYYL 375

Query: 438 TSLGDIDISKITEK 451
              G+  +  +T++
Sbjct: 376 AEQGEYKLLTLTKR 389


>gi|158520042|ref|YP_001527912.1| primosomal protein N' [Desulfococcus oleovorans Hxd3]
 gi|158508868|gb|ABW65835.1| primosomal protein N' [Desulfococcus oleovorans Hxd3]
          Length = 679

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 18/214 (8%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +   IL + P   T  QE+ + D++  +        +L G  GSGKT V +  +AAA+  
Sbjct: 123 VGDPILPDTPPDLTTDQEAVVADLVSRL-DAGFCSCLLAGITGSGKTEVYMRVVAAALAM 181

Query: 321 GGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           G  A+++ P I ++AQ  + F  ++       V ++   + +  R     +IA G+A I 
Sbjct: 182 GKTALVLVPEIALIAQAEHRFCARFGHT----VAVLHSGLSRTERWHQWSKIARGEAAIA 237

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------TAPHVLLMTAT 429
           IGT +     +    +I  IVDE+H    +Q   L   A          +   V+L +AT
Sbjct: 238 IGTRSAVFAPLDRPGII--IVDEEHDTSYKQESGLRYNACDLAVVRAKLSDAVVVLGSAT 295

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           P  ++L   + G    +   ++   R+P+  + +
Sbjct: 296 PSVQSLHNATTGKFSKTYRMDRRINRQPLPAITV 329


>gi|302382668|ref|YP_003818491.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193296|gb|ADL00868.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 728

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 140/346 (40%), Gaps = 69/346 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQ-HYEFIKKYTQ 346
           ++    GSGKT+   +A+A  +    +         A+++AP   LAQQ   E    Y Q
Sbjct: 49  LVSAQTGSGKTVAFGLALAPTLLGEAERFTDFGAPLALVIAPTRELAQQVASELTWLYAQ 108

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVD 401
               IV  + G  P+  RR ALER     AHI++GT    +D ++   L L     V++D
Sbjct: 109 TGARIVSCVGGMDPKVERR-ALER----GAHIVVGTPGRLRDHLERGALDLSEARAVVLD 163

Query: 402 EQHRF---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT--------- 449
           E       G Q+ L           +L  A P  RTL+ ++    DI ++          
Sbjct: 164 EADEMLDMGFQEDLTF---------ILDAAPPTRRTLMFSATLARDIVQLAKTYQRDAIR 214

Query: 450 -EKPAGRKP-----IKTVIIPINRID-EVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
            +  AG K       K +    N I+  V+  L+   + G   +           +N R 
Sbjct: 215 IDTVAGNKSHADIEYKAIRCAPNEIELAVVNVLRYFEAPGALVF-----------ANTRE 263

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            V+   +       S+  + G ++   +   + + ++G  ++ +AT V   G+D+ D  +
Sbjct: 264 RVKHLTASLRERGFSVVGLSGELTQSARSEALQALRDGHARVCVATDVAARGLDLPDLGL 323

Query: 563 IIIENAE-HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           +I  +AE     A L    GR GR  +    +LL        SYTR
Sbjct: 324 VI--HAEIPVNKAGLLHRSGRTGRAGKKGVSVLLV-------SYTR 360


>gi|212224191|ref|YP_002307427.1| DEAD/DEAH box RNA helicase [Thermococcus onnurineus NA1]
 gi|212009148|gb|ACJ16530.1| DEAD/DEAH box RNA helicase [Thermococcus onnurineus NA1]
          Length = 403

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 141/338 (41%), Gaps = 50/338 (14%)

Query: 290 QKNRMLRILQGDV--------GSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHY 338
           QK  + R+L GD         G+GKT    + +  A+   E   QA+I+AP   LA Q  
Sbjct: 28  QKEVIPRLLSGDADIIGQSQTGTGKTAAFALPIIEAIDEKEKSVQAIILAPTRELALQVA 87

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL- 397
           + IK      ++ V  + G  P   + +ALER      H+++GT     D I+   L L 
Sbjct: 88  DEIKSLRGRKRVYVYAVYGGQPIGPQIRALER----GTHVVVGTPGRVLDHIRRGTLDLS 143

Query: 398 ----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS---LGDI 443
                I+DE  R         ++   + T K     VL+ +AT +PR ++  +   + D 
Sbjct: 144 KVKFFILDEADRMLDMGFIDDIEAIFRETPKKK--RVLMFSAT-MPREILRLARRYMNDY 200

Query: 444 DISKITEK---PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           ++ K++     P   +     ++P  +       LK +LS+       C    E +E + 
Sbjct: 201 EVIKVSSDELVPGMVEQEYIEVVPARKFST----LKKILSDDFYGIVFCATKRETRELS- 255

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
                    L +   S+ A+ +G MS   +E     FK    ++L+AT V   G+DV D 
Sbjct: 256 -------EKLRKQGYSAEAL-NGDMSQAARERTFWRFKTKRTRILVATDVAARGLDVQDI 307

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           S I+  +        +H++ GR GR  +    +    P
Sbjct: 308 SHIVNYSLPMTAEDYVHRI-GRTGRMGKKGKAVTFIMP 344


>gi|325106943|ref|YP_004268011.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
 gi|324967211|gb|ADY57989.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 399

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 140/338 (41%), Gaps = 43/338 (12%)

Query: 299 QGDVGSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   G+GKT   ++ ++ +    +   QA+++ P   L++Q     +K ++ +++ + ++
Sbjct: 60  QSQTGTGKTAAFMMPVLELLKEQQEEPQALVLCPTRELSEQVAVEAQKISRFSKLEIAVV 119

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR----- 405
            G  P   + + +ER       +++GT     D     S+    + L ++DE  R     
Sbjct: 120 VGGRPLKAQMQKIER----GVDVVVGTPGRVIDLFKRKSLSLKNIRLAVLDEADRMLDIG 175

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR---KPIKTVI 462
           F       L Q       LL++AT               +    E+ A R    P++  I
Sbjct: 176 FRPDMEFILKQCPKERQTLLLSAT---------------LPSEVERLANRFMKDPVRIDI 220

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS--- 516
            P N   + +E+    + E +K   +   + ++K      F     + + L+  F +   
Sbjct: 221 EPQNVTADRVEQFYCTVDEHRKLQLLIKLLVQEKPKQAIVFCRTKRKADQLYNKFQTRLD 280

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +  +HG +    ++ VM  F+ G  ++LIAT ++  GIDV   S II  +        +
Sbjct: 281 GVETLHGDLPQSKRDRVMKQFRAGKVRMLIATDIVGRGIDVGGISHIINYDIPEHSDDYV 340

Query: 577 HQLRGRVGR-GEEISSCILLYHPPLSKNSYTRLSVLKN 613
           H++ GR GR   E S     +      N  T++ +L N
Sbjct: 341 HRI-GRAGRLSSEFSGRAFTFVTQGQGNELTKIELLVN 377


>gi|297833410|ref|XP_002884587.1| hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330427|gb|EFH60846.1| hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1097

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 39/287 (13%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI               G   +I+AP   LA Q  +   ++ ++++I    
Sbjct: 482 TGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTC 541

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF--- 406
           + G  P+  + K LER     A I++ T     D      I + ++ L+++DE  R    
Sbjct: 542 LYGGAPKGPQLKELER----GADIVVATPGRLNDILEMKKIDFQQVSLLVLDEADRMLDM 597

Query: 407 GVQQRLKLTQKATAP--HVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
           G + +++      +P    L+ TAT  P+ +      +L +   ++I K+ E  A +   
Sbjct: 598 GFEPQIRKIVNEISPRRQTLMYTAT-WPKEVRKIASDLLVNPVQVNIGKVDELAANKAIT 656

Query: 459 KTV-IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + V ++P    +  +E++      G K    C        S  R       S+  HF + 
Sbjct: 657 QYVEVVPQMEKERRLEQILRSQERGSKVIIFC--------STKRLCDHLARSVGRHFGA- 707

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             +IHG  +  +++ V+  F++G   +LIAT V   G+D+ D  ++I
Sbjct: 708 -VVIHGDKTQGERDWVLSQFRSGKSCILIATDVAARGLDIKDIRVVI 753


>gi|330961130|gb|EGH61390.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 459

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 187/428 (43%), Gaps = 57/428 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  ++   I V
Sbjct: 45  IAQAKTGSGKTAAFGIGLLNPINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 105 LTLCGGVSFGPQIGSLE---HG-AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRM- 159

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++   + I +++ K   R P +TV +   
Sbjct: 160 ------LDMGFYDSIADIIEQTPQRRQTLLFSATYPVGIKQLSSKFM-RDP-QTVKVEAL 211

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAI 520
             D  IE++   +S  ++   +   +   + ++   F    ++   + +H T+   S   
Sbjct: 212 HADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVG 271

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++ V+  F N +  +L+AT V   G+D +DA  ++I N E    +++H  R
Sbjct: 272 LHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVI-NVELARDSEIHIHR 329

Query: 581 -GRVGRGEEISSCILLYHP---------------PLSKNSYTRLSVLKNTE-----DGFL 619
            GR GR  E    + L  P               PL+   Y  LS+ +  +         
Sbjct: 330 VGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQQYDNLSIKEGGKLLPAMTTLC 389

Query: 620 IAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAKHILTQDPDLTS 675
           I      + + G+ILG    ++G+P   + +  + D  + + + R  AK  L +  +   
Sbjct: 390 IGSGRKDKLRPGDILGALTGEAGIPGTQVGKIAIFDFQAYVAVERSMAKQALERLNN-GK 448

Query: 676 VRGQSIRI 683
           ++G+S+R+
Sbjct: 449 IKGKSLRV 456


>gi|255319683|ref|ZP_05360891.1| primosomal protein N' [Acinetobacter radioresistens SK82]
 gi|262380034|ref|ZP_06073189.1| primosomal protein N [Acinetobacter radioresistens SH164]
 gi|255303212|gb|EET82421.1| primosomal protein N' [Acinetobacter radioresistens SK82]
 gi|262298228|gb|EEY86142.1| primosomal protein N [Acinetobacter radioresistens SH164]
          Length = 741

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +P + Q  AI+ IL+ + +    L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 201 LAQMPLTPNEDQHKAIQRILKSLKKFQAFL--LDGLTGSGKTEVYLQVMYEVLKQGKQIL 258

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F  ++  N  I+  ++   + ++ R +A +    G+A II+GT +
Sbjct: 259 VLVPEIGLTPQTISRFKSRF--NVDIV--LLHSGLSESKRLQAWQHAQTGKASIILGTRS 314

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
               S+   +L L+I+DE+H    +Q+
Sbjct: 315 AIYTSLP--RLGLIILDEEHDLSFKQQ 339


>gi|307264814|ref|ZP_07546376.1| nucleic acid binding OB-fold tRNA/helicase-type [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306920072|gb|EFN50284.1| nucleic acid binding OB-fold tRNA/helicase-type [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 237

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 117/248 (47%), Gaps = 19/248 (7%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           PL   +   +GVG K +  L K+ IN          DLLFY P  + +R    KI ++  
Sbjct: 2   PLNLDIQYVKGVGPKRAKLLKKLGINTVE-------DLLFYFPKDYENRSDILKIEDLKV 54

Query: 67  ERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               T  GYI+      +  K    K+ + DGTG + L+++      +KN F  G +  +
Sbjct: 55  GEKQTFRGYIAGSPREIKTSKVIITKVPVKDGTGAVELVWY--NQPYIKNNFKIGEEYII 112

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDV--NFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182
            GK++    ++I+ +P  +   S+D+  N   I  +Y L  GL+ +  +KI+  AL   +
Sbjct: 113 NGKLQFKYGQLIVENP--VLEKSEDLKLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 170

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E+ +++ L +K    I  A   I+ P+      +   A+ R  Y EL   Q+AL L
Sbjct: 171 QEVEEFFDEEFLSEKGLMDIKNALININFPQNE---AYLEQAKYRFKYQELFLLQMALFL 227

Query: 243 MRKQFKKE 250
           M++  K++
Sbjct: 228 MKRSVKEK 235


>gi|126725538|ref|ZP_01741380.1| primosome assembly protein PriA [Rhodobacterales bacterium
           HTCC2150]
 gi|126704742|gb|EBA03833.1| primosome assembly protein PriA [Rhodobacterales bacterium
           HTCC2150]
          Length = 731

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 123/283 (43%), Gaps = 43/283 (15%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKIL------RNIPFSP- 273
           +PAR+++       G++A  L  ++  +  G+  +V +G +AQ ++      R++P+   
Sbjct: 131 TPARKKVIQALADYGELAFTL--RELAEMAGVSSSVVKGLVAQGVVDEEDSPRDLPYGKL 188

Query: 274 ---------TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
                    +K Q +A+  + + +  K     +L+G  GSGKT V L A+A  ++ G QA
Sbjct: 189 DYTLKGKELSKDQANAVDKLKEGLQSKVYGTTLLKGVTGSGKTEVYLEAVAECIKNGRQA 248

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH- 383
           +++ P   L  Q   F+ +  +    +       + Q  RR+    +  G A +I+G   
Sbjct: 249 LVLLPEIALTSQ---FLDRVRERFGAMPAEWHSGVTQTERRRCWRMVGQGNAELIVGARS 305

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------TAPHVLLMTATPIPR 433
           ALF   + +  L L++VDE+H    +Q   +   A              V+L +ATP   
Sbjct: 306 ALF---LPFRDLGLIVVDEEHDTSYKQEDGVLYNARDMSVLRAAIGGAQVVLSSATPSLE 362

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIP-INRIDEVIERL 475
           +      G      +T +        T ++P +N ID   E L
Sbjct: 363 SWANVEAGKYQRLDLTSR------FGTAVLPSMNAIDMRAENL 399


>gi|293115360|ref|ZP_05791135.2| primosomal protein [Butyrivibrio crossotus DSM 2876]
 gi|292810231|gb|EFF69436.1| primosomal protein [Butyrivibrio crossotus DSM 2876]
          Length = 738

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 25/183 (13%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           K  +KIL N      + Q    + I++DM   + M  +++G  GSGKT V L  +   + 
Sbjct: 200 KSGEKILLN------EEQRYVAESIIKDMENGDMMPSLIKGVTGSGKTEVYLELIEWVIN 253

Query: 320 AGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            GG  + + P I +  Q    F  ++      IV +I   M +  R  + E    G+  I
Sbjct: 254 RGGDVICLIPEISLTYQTVMRFYNRFGD----IVSVINSKMSKGERYDSFEMAKSGKIRI 309

Query: 379 IIGTH-ALFQDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMT 427
           +IG   ALF     + +L L+I+DE+H          R+  ++      K T   V+L +
Sbjct: 310 MIGPRSALF---TPFNRLSLIIIDEEHESAYKSENVPRYHARETAIELAKMTGAKVVLGS 366

Query: 428 ATP 430
           ATP
Sbjct: 367 ATP 369


>gi|294787985|ref|ZP_06753229.1| putative ATP-dependent DNA helicase, UvrD/REP family [Simonsiella
           muelleri ATCC 29453]
 gi|294484278|gb|EFG31961.1| putative ATP-dependent DNA helicase, UvrD/REP family [Simonsiella
           muelleri ATCC 29453]
          Length = 1602

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 150/345 (43%), Gaps = 54/345 (15%)

Query: 302 VGSGKTLVALI-AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GN 358
            G GK++   + A+ A        V+++P+  L +   + +++     + I E +T  G+
Sbjct: 290 TGGGKSVTFQVPALMAGERQKALTVVISPLQSLMKDQVDNLEQ-----RGITEAVTINGS 344

Query: 359 MPQAHRRKALERIAHGQAHII-IGTHALFQDSIQYY----KLILVIVDEQHRFG------ 407
           +    R+KA+ER++ G A ++ I   +L  ++I+       +   ++DE H F       
Sbjct: 345 LDPIERQKAMERVSDGSASLLYISPESLRSNTIERLLHGRNIARFVIDEAHCFSAWGQDF 404

Query: 408 ----------VQQRLKLTQKATAPHVLLMTATPIPRTL-----VLTSLGDIDISKITEKP 452
                     ++Q  KL +    P +   TAT  P+ +           ++D+ ++ +  
Sbjct: 405 RVDYLYIAESIRQLQKLQKNRVIP-ISCFTATAKPQVIEDIKNYFQRELNLDL-QVFQAA 462

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             RK +   ++P    DE  + L+ ++ E +     CP I     S+ R   +    L +
Sbjct: 463 VARKNLSYQVLPQKNDDERYQSLRRLIDEYR-----CPTI--VYVSHTRKTEDIAEQLRQ 515

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF- 571
              +++A  HG+M    +    + F  G   +++AT+   +G+D  D  +++     H+ 
Sbjct: 516 DGFAALAY-HGKMPKETRIDHQNQFMMGEVNVMVATSAFGMGVDKKDVGLVV-----HYE 569

Query: 572 ---GLAQLHQLRGRVGRGEEI-SSCILLYHPPLSKNSYTRLSVLK 612
               L    Q  GR GR E+I ++C +L+ P      +T L+  K
Sbjct: 570 ISDSLENYVQEAGRAGRDEQIQAACFVLFQPDDLDKHFTLLNQTK 614


>gi|241762563|ref|ZP_04760638.1| primosomal protein N' [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241372891|gb|EER62578.1| primosomal protein N' [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 722

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 108/230 (46%), Gaps = 29/230 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           +++Q  A + + + +++K+    +L G  GSGKT V   A+A  +  G Q++I+ P   L
Sbjct: 191 SETQSKAAEILKESIAKKSFETFLLDGVTGSGKTEVYFEAIAQTLRDGKQSLILLPEIAL 250

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            +    F+K++         +   ++ QA RRK  + I  GQA ++IG   ALF   + +
Sbjct: 251 TE---PFLKRFQARFGCEPVVWHSDLSQARRRKNWQAIVTGQAKVVIGARSALF---LPF 304

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLGD 442
             + L+IVDE H    +Q   +  +A    V+          L TATP   +++   LG+
Sbjct: 305 KAIGLIIVDEAHETSFKQEDGVCYQARDVAVMRAKFENIPVILATATPAIESVMQVRLGN 364

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
               ++ E+  G   + T+         VI   +  L++G+   W+ P +
Sbjct: 365 YKEIRLAER-HGSAGLPTI--------HVINMTEQALAKGR---WLAPPL 402


>gi|146419877|ref|XP_001485898.1| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 397

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 143/337 (42%), Gaps = 49/337 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P+  Q  AI  I++          I Q   G+GKT    I + + ++      QA++++
Sbjct: 46  APSAIQSRAIMQIIRGRDT------IAQAQSGTGKTATFSIGILSLIDTKSKDCQALVLS 99

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ    I+       +      G        K L++   GQ HII GT     D
Sbjct: 100 PTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKKLQQ---GQ-HIISGTPGRVLD 155

Query: 389 SIQYYKLI-----LVIVDEQHRF---GVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLT 438
            I+   ++     ++++DE       G ++++    K       V++++AT  P  L +T
Sbjct: 156 MIKRRNIMPRHVKMLVLDEADELLTKGFKEQIYEIYKTLPAGAQVVVVSATLTPEVLEMT 215

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW----ICPQIEE 494
           +       K T  P        V I + R D  ++ +K    + +K  W    +C   + 
Sbjct: 216 N-------KFTSDP--------VKILVKRDDVTLKGIKQYYIQCEKEDWKFDTLCDLYDN 260

Query: 495 KKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +    F +   + N L      S   +A +HG M   D++S+M  F++G+ ++LI+T
Sbjct: 261 LTITQAVIFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFRSGSTRVLIST 320

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            V   GIDV   S++I  +        +H++ GR GR
Sbjct: 321 DVWARGIDVQQVSLVINYDLPLDKENYVHRI-GRSGR 356


>gi|39995299|ref|NP_951250.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens PCA]
 gi|39982061|gb|AAR33523.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens PCA]
          Length = 460

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 178/424 (41%), Gaps = 78/424 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQ---HYEFIKKYTQNTQI 350
           I +   GSGKT    I + + ++A     QA+++ P   LA Q       + ++T N +I
Sbjct: 45  IARAKTGSGKTAAFGIGLLSRLDALSFRVQALVLCPTRELADQVGKELRRLARFTDNIKI 104

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR 405
           +   I G +P   +  +LE   HG AH++IGT     D     S+    L  +++DE  R
Sbjct: 105 LT--ICGGVPFGPQLGSLE---HG-AHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADR 158

Query: 406 F---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLG----DIDISKITEKPAGRK 456
               G Q  +     A  P    LL +AT  P ++   S G     +++S   ++  G  
Sbjct: 159 MLDMGFQDDISALIAAAPPKRQTLLFSAT-YPDSIAAMSAGVQREPVEVS--VDEVHGEG 215

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            I+ V   ++   + IE ++ +L   +   A   C    E +E          N+L    
Sbjct: 216 AIEQVFYEVDS-GQRIEAVERILGHYRPESALIFCNTKLECQEVA--------NALAVRG 266

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            +++AI HG +   +++ V+  F N +  +L+AT V   G+D+ + S +I  N E     
Sbjct: 267 YAALAI-HGDLDQRERDRVLVRFANRSASVLVATDVAARGLDIKELSAVI--NYELTRNP 323

Query: 575 QLHQLR-GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL-------- 625
           ++H  R GR GR  E    + L  P       +RL        G +IA  DL        
Sbjct: 324 EVHTHRIGRTGRAGERGLAVSLVTP-----RESRLIAAIADVPGSIIARGDLSTLAPLTA 378

Query: 626 -----------------KQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAK 664
                             + + G+ILG    + GMP   + + ++ D  + + IAR+ ++
Sbjct: 379 KPPLPPMVTLCIDGGRKNKLRPGDILGALTGEGGMPASEVGKIDVFDFFTYVAIARQSSE 438

Query: 665 HILT 668
             L 
Sbjct: 439 QALN 442


>gi|229593065|ref|YP_002875184.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens SBW25]
 gi|229364931|emb|CAY53031.1| ATP-independent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 461

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 186/438 (42%), Gaps = 77/438 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  +    I V
Sbjct: 47  IAQAKTGSGKTAAFGIGLLNPINPRYFGCQALVMCPTRELADQVAKEIRRLARAEDNIKV 106

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AH+I+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 107 LTLCGGVSLGPQIASLE---HG-AHVIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRM- 161

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               L +        ++  T  P  +TL+ ++   + I ++  K   R P +      + 
Sbjct: 162 ----LDMGFYDAIEDIISKT-PPRRQTLLFSATYPVSIKQLASKFM-RAPQQVKAEAFHS 215

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKES------NFR--SVV------ERFNSLHEH 513
            D++ +R           Y I P  EE+ E+      +FR  S V      ++     +H
Sbjct: 216 DDQIEQRF----------YEISP--EERMEAVTKVLAHFRPASCVAFCFTKQQVQETVDH 263

Query: 514 FTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            T+   S   +HG +   D++ V+  F N +  +L+AT V   G+D+    ++I  N E 
Sbjct: 264 LTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDSLDMVI--NVEL 321

Query: 571 FGLAQLHQLR-GRVGRGEEISSCILLYHPP----------LSKN--SYTRLSVLKNTEDG 617
              +++H  R GR GR  E    I L  P           L K+  ++ +L  LK    G
Sbjct: 322 ARDSEIHIHRVGRTGRAGETGIAISLVAPSEAHRAQAIEQLQKSPLNWDQLDNLKPQSGG 381

Query: 618 --------FLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAKH 665
                     IA     + + G+ILG    ++G+P   + +  + D  + + + R  AK 
Sbjct: 382 PLLPQMSTLCIAAGRKDKVRPGDILGALTGEAGIPGAQVGKIAIFDFQAFVAVERGIAKQ 441

Query: 666 ILTQDPDLTSVRGQSIRI 683
            L +  D   ++G+S+R+
Sbjct: 442 ALQRLND-GKIKGRSLRV 458


>gi|330976959|gb|EGH76980.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 459

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 187/428 (43%), Gaps = 57/428 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  ++   I V
Sbjct: 45  IAQAKTGSGKTAAFGIGLLNPINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 105 LTLCGGVSFGPQIGSLE---HG-AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRM- 159

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++   + I +++ K   R P + V +   
Sbjct: 160 ------LDMGFYDAIADIIEQTPQRRQTLLFSATYPVGIKQLSSKFM-RDP-QIVKVEAL 211

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAI 520
             D  IE++   +S  ++   +   +   + ++   F    ++   + +H T+   S   
Sbjct: 212 HADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVG 271

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++ V+  F N +  +L+AT V   G+D +DA  ++I N E    +++H  R
Sbjct: 272 LHGDLDQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVI-NVELARDSEIHIHR 329

Query: 581 -GRVGRGEEISSCILLYHP---------------PLSKNSYTRLSVLKNTE-----DGFL 619
            GR GR  E    + L  P               PL+   Y RLS+ +  +         
Sbjct: 330 VGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQQYDRLSIKEGGKLLPAMTTLC 389

Query: 620 IAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAKHILTQDPDLTS 675
           I      + + G+ILG    ++G+P   + +  + D  + + + R  AK  L +  +   
Sbjct: 390 IGSGRKDKLRPGDILGALTGEAGIPGTQVGKIAIFDFQAYVAVERSMAKQALERLNN-GK 448

Query: 676 VRGQSIRI 683
           ++G+S+R+
Sbjct: 449 IKGKSLRV 456


>gi|167564024|ref|ZP_02356940.1| ATP-dependent DNA helicase RecG [Burkholderia oklahomensis EO147]
          Length = 259

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 14/207 (6%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+    I    G +  +      +R+    L +D  
Sbjct: 55  TRDIDLVLHLPMRYEDETTLTPVRELLPGEIAQTEGVVFDNEIAYRPRRQLLVKLRDDSD 114

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            E+ L F       +K +   G+++ V G ++     + MVHP        + + PL +A
Sbjct: 115 AELVLRFLNFYGSQVKQMAV-GQRLRVRGDVRGGFFGLEMVHPTV---KVVEADAPLPQA 170

Query: 159 ---VYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
              VY    G+S    +K I  AL+R P+   LP  + +  L     P +A+A  ++H+P
Sbjct: 171 LTPVYPSTAGVSQAYLRKAIDNALTRTPLPELLPPEVARAHLAPLDVPPLADAVRLLHHP 230

Query: 213 RKAKD----FEWTSPARERLAYDELLA 235
               D     + T PA  R+ +DELLA
Sbjct: 231 GVGADETALIDGTHPAWTRIKFDELLA 257


>gi|307257078|ref|ZP_07538853.1| Primosomal protein N' [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306864449|gb|EFM96357.1| Primosomal protein N' [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 732

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 170/422 (40%), Gaps = 105/422 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++ G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 218 LLNGVTGSGKTEVYLQVIEEVLKRGEQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 273

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
             +M +  R  A  R  +G++ I+IGT  ALF    Q+ KL L+I+DE+H          
Sbjct: 274 HSSMNETERLNAWLRAKNGESAIVIGTRSALFS---QFEKLGLIIIDEEHDSSFKQQDGW 330

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           R+  +    L  K     ++L +ATP   ++     G      +T +    +  K  +I 
Sbjct: 331 RYHARDLAILRAKNLHTPIILGSATPSLESVQNVQNGKFIELSLTARAGNAQQTKQQLID 390

Query: 465 I--NRI-----DEVIERLKVVLSEGKKAY------------------WIC-------PQI 492
           +   RI     D ++  +K  L +G +                    W+C       P  
Sbjct: 391 LKTQRITAGLSDRLLAMMKRHLEQGNQVMLFLNRRGFAPVLLCHECGWMCECDACEKPYT 450

Query: 493 EEKKESNFRS-------VVERFNSLHEHFTSSIAIIHG-----------------RMSDI 528
             +K+   R        V+ R      H  S+  I  G                 ++S I
Sbjct: 451 YYQKQKILRCHHCASQRVIPRQCG---HCGSTNLITTGVGTEQLEQVLSEQFPTYQISRI 507

Query: 529 DKESV---------MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF-------- 571
           D++S          ++  + G  ++LI T ++  G    + +++ I N +          
Sbjct: 508 DRDSTARKGALENHLNDIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTDFRA 567

Query: 572 --GLAQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL-IAEEDLKQ 627
              LAQL+ Q+ GR GR E+    +L  H P     +  L  L   E G+L  A+E LK 
Sbjct: 568 EERLAQLYVQVAGRAGRAEKQGEVVLQTHYP----EHPLLKTL--LEQGYLAFAQEALKI 621

Query: 628 RK 629
           RK
Sbjct: 622 RK 623


>gi|114768996|ref|ZP_01446622.1| ATP-dependent RNA helicase protein [alpha proteobacterium HTCC2255]
 gi|114549913|gb|EAU52794.1| ATP-dependent RNA helicase protein [alpha proteobacterium HTCC2255]
          Length = 667

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 136/326 (41%), Gaps = 64/326 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILAQQ-HYEFIKKYTQ 346
           ++    GSGKT+   IA+A  +              A+++AP   LA Q   E    Y  
Sbjct: 35  LVSAQTGSGKTVGFGIAIAPTILKDAINFDKAVAPLALVIAPTRELAMQVKRELTWLYGM 94

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVD 401
               I   + G M     R++LER     +HI++ T    +D IQ   + L     V++D
Sbjct: 95  AKATIASCV-GGMDMRDERRSLER----GSHIVVATPGRLRDHIQRGSINLSQVKAVVLD 149

Query: 402 EQHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLV------------LTSLGDID 444
           E       G ++ L+  L++   +   L+ +AT +PR +V            +T++ D  
Sbjct: 150 EADEMLDLGFREDLEFILSEAPESRRTLMFSAT-VPRAIVNLAKSYQKDAIRITTVSD-- 206

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
               T++ A  + I   + P +  + +I  L+    E   A   C         N R++V
Sbjct: 207 ----TKQHADIEYIAMTVSPRDGENAIINALRYY--EAPNALVFC---------NTRAMV 251

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            R  S   +   S+  + G +S  ++   + + ++G  ++ +AT V   GID+ +  +++
Sbjct: 252 NRLTSRLSNRGFSVVALSGELSQSERTHALQAMRDGRARVCVATDVAARGIDLPNLDLVV 311

Query: 565 IENAEHFGLAQLHQL----RGRVGRG 586
                H  L Q H+      GR GR 
Sbjct: 312 -----HAELPQNHETMLHRSGRTGRA 332


>gi|172039349|ref|YP_001805850.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
 gi|171700803|gb|ACB53784.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
          Length = 480

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 159/359 (44%), Gaps = 40/359 (11%)

Query: 258 EGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           E +I Q  L+ + F SPT+ QE AI  +L+          + Q   G+GKT    + +  
Sbjct: 12  EARINQ--LQTLGFESPTEIQEKAIPLLLEGHDV------LGQSQTGTGKTAAYSLPILE 63

Query: 317 AVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
            ++   +  QA+I+ P   LAQQ  E +K ++   ++ +  + G      + ++LER   
Sbjct: 64  QIDTRNSNVQALILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIRSLER--- 120

Query: 374 GQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHV 423
               I++GT     D ++  KL+L      ++DE       G    +K  L +   A + 
Sbjct: 121 -GVQIVVGTPGRVIDLLERKKLVLDSLRWAVLDEADEMLSMGFIDDVKTILRKTPDARNT 179

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
              +AT +PR      + D+ +++  + P      +T   P  RID+ +  +    S+ +
Sbjct: 180 ACFSAT-MPR-----EIRDL-VNQFLKSPVTVSVERTQAAP-TRIDQHLYMVPRGWSK-R 230

Query: 484 KAYWICPQIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           KA     +IE+ + +      +       S  +    S+   HG +S   +E ++  F+ 
Sbjct: 231 KALQPILEIEDPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFRE 290

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G  KL++AT +   G+DV + S +I  +        +H++ GR GR  +  + I L  P
Sbjct: 291 GKIKLVVATDIAARGLDVENLSHVINYDLPDNSETYIHRI-GRTGRAGKTGTAISLVEP 348


>gi|222084927|ref|YP_002543456.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
 gi|221722375|gb|ACM25531.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
          Length = 636

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 146/339 (43%), Gaps = 52/339 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILA---QQHYEFIKKY 344
           ++    GSGKT+   +A+A  +  G +         A+ +AP   LA   Q+  E++ + 
Sbjct: 41  LVSAQTGSGKTVAFGLALAPTLLDGAERFGRAGTPLALAIAPTRELALQVQRELEWLYEL 100

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVI 399
           T  T  IV  + G M     ++ALER     AHI++GT     D     S+   KL  V+
Sbjct: 101 TGAT--IVSCV-GGMDMRTEKRALER----GAHIVVGTPGRLCDHIRRNSLDISKLKAVV 153

Query: 400 VDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPA 453
           +DE       G ++ L+  L    T    L+ +AT +PR++  L      D  +I     
Sbjct: 154 LDEADEMLDLGFREDLEFILETSPTERRTLMFSAT-VPRSIAKLAENYQRDAVRIASATE 212

Query: 454 GRKPIKT-----VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            ++ +        ++P +R + +I  L+    E + A   C         + R+ V    
Sbjct: 213 AKQHVDIDYRALTVVPSDRENAIINVLRYY--EAQNAIVFC---------STRAAVNHLT 261

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +   +   S+  + G +S  ++   + + ++G  ++ IAT V   GID+    ++I  + 
Sbjct: 262 ARFNNRGFSVVALSGELSQSERTHALQAMRDGRARVCIATDVAARGIDLPGLDLVIHADI 321

Query: 569 EHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNSYT 606
                  LH+  GR GR G +  S +++   PLS    T
Sbjct: 322 PTNPETLLHR-SGRTGRAGRKGVSALIV---PLSGRRRT 356


>gi|258617566|gb|ACV83780.1| DEAD box ATP-dependent RNA helicase-like protein [Heliconius
           melpomene]
          Length = 646

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 146/347 (42%), Gaps = 57/347 (16%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++  A  +          G  A+I+AP   LAQQ     + Y+ +  I   
Sbjct: 281 TGSGKTLAYMLPAAVHIVHQQRIQRGDGPIALILAPTRELAQQIQSVAQAYSAHGCIRNT 340

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR--- 405
            + G  P+  + + LER       I+I T       L + +    +   +++DE  R   
Sbjct: 341 CLFGGSPKGPQARDLER----GVEIVIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLD 396

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKP 457
             F  Q R  + Q      VL+ +AT  P+ +       LT    ++I  +    +    
Sbjct: 397 MGFEPQIRKIIEQIRPDRQVLMWSAT-WPKEIQALAEDFLTDYVKVNIGSLNL--SANNN 453

Query: 458 IKTVIIPINRIDEVIER----------LKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           IK +I       EV E           LK + SE      +  + ++K +   R+V  R 
Sbjct: 454 IKQII-------EVCEEHEKEVKLTNLLKEIASEKDNKVIVFVETKKKVDDIARAV--RR 504

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           N  H+        IHG  S  ++++V+  F+NG   +LIAT V   G+DV D   ++  +
Sbjct: 505 NG-HKALA-----IHGDKSQQERDAVLTEFRNGATTILIATDVAARGLDVEDVKFVVNFD 558

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
             +     +H++ GR GR ++  +    +    ++ + + L+VL+ T
Sbjct: 559 YPNTSEDYIHRI-GRTGRCQQSGTAYTYFTSGDARQARSLLAVLRET 604


>gi|167760429|ref|ZP_02432556.1| hypothetical protein CLOSCI_02803 [Clostridium scindens ATCC 35704]
 gi|167661928|gb|EDS06058.1| hypothetical protein CLOSCI_02803 [Clostridium scindens ATCC 35704]
          Length = 742

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 19/169 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q  AI     D  Q  R   ++ G  GSGKT V +  +   ++ GGQA+++ P I +
Sbjct: 206 TDEQRHAIGVFWDDYRQGKRENYLVYGVTGSGKTEVYMEMIDRVLKEGGQAIVLIPEIAL 265

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F  K+       V I+   M Q  R   +ER+  G+  ++IG   ALF     
Sbjct: 266 TYQTVMRFYGKFGDR----VSILNSRMSQGERFDQMERVKAGEVDVMIGPRSALF---TP 318

Query: 392 YYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP 430
           +  L L+++DE+H          R+  ++   +  K     V+L +ATP
Sbjct: 319 FPNLGLIVIDEEHETTYKSEQVPRYHARETAMMRGKMEGASVVLGSATP 367


>gi|289679716|ref|ZP_06500606.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           syringae FF5]
          Length = 228

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 39/69 (56%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q++ I  +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P
Sbjct: 148 PFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVP 207

Query: 330 IGILAQQHY 338
             +LAQQHY
Sbjct: 208 TTLLAQQHY 216


>gi|296422326|ref|XP_002840712.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636934|emb|CAZ84903.1| unnamed protein product [Tuber melanosporum]
          Length = 438

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 158/375 (42%), Gaps = 72/375 (19%)

Query: 261 IAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +++++L  I F     P+K QE A+  +L   +    M  I Q   G+GKT   ++ M  
Sbjct: 76  LSKELLEGIYFMNFKKPSKIQERALPLLLS--TPPTNM--IGQSQSGTGKTAAFVLTMLT 131

Query: 317 AVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
            ++      QAV + P   LA+Q    I+   Q T +  +    NM Q  ++        
Sbjct: 132 RIDMSATNVQAVCLTPTRELARQIMNVIQTMGQFTNVKTQFAIPNMVQRGQKI------- 184

Query: 374 GQAHIIIGTHALFQDSIQYYKL------ILVIVDEQHRFGVQ----QRLKLTQKATAPHV 423
             AHI++GT     D I+  +L      + V+ +  +   +Q    Q L++   +  P +
Sbjct: 185 -DAHIVVGTPGTVLDLIRRKQLPIEHLKVFVLDEADNMLDLQGLGEQCLRVKSYSWVPDI 243

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE---VIERLKVVLS 480
            L       R   LT  G                IK + +  +  ++   ++  L  +L+
Sbjct: 244 TL-------RQEELTVEG----------------IKQLWMDCDSQEDKYRMLLELYHILT 280

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G    ++     +K+E+   S ++R      H    +A +HG     D++ V+D F++G
Sbjct: 281 IGSSIIFV-----KKRETA--SEIQRRMEADGH---KVAALHGAQEGADRDRVIDDFRSG 330

Query: 541 TCKLLIATTVIEVGIDVVDASIII------IENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             K+LI T V+  GIDV   S+++       +N     L  LH++ GR GR   +   I 
Sbjct: 331 KAKVLITTNVLARGIDVATVSMVVNYDIPLDQNGRPDPLTYLHRI-GRTGRFGRVGVSIT 389

Query: 595 LYHPPLSKNSYTRLS 609
             H   +++   ++S
Sbjct: 390 FVHDEQTRSEMNQIS 404


>gi|224065635|ref|XP_002301895.1| predicted protein [Populus trichocarpa]
 gi|222843621|gb|EEE81168.1| predicted protein [Populus trichocarpa]
          Length = 1112

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 146/360 (40%), Gaps = 62/360 (17%)

Query: 302 VGSGKTLVALIAM------AAAVEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++ M         VEAG   +  +MAP   L QQ +  IKK+ +   I   
Sbjct: 518 TGSGKTLAFVLPMLRHIKDQPPVEAGEGPIGLVMAPTRELVQQIHSDIKKFAKALSIRCV 577

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G    A +   L+R       I++ T     D +           ++  +++DE  R
Sbjct: 578 PVYGGSGVAQQISELKR----GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 633

Query: 406 F---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKP-----AGR 455
               G + ++    +   P    +L +AT  PR +   +       K+  KP      GR
Sbjct: 634 MFDMGFEPQITRIVQNIRPDRQTVLFSAT-FPRQVETLA------RKVLNKPVEIQVGGR 686

Query: 456 KPIK---TVIIPINRIDEVIERLKVVLSEG--KKAYWICPQIEEKKESNFRSVVERFNSL 510
             +    T ++ +   D+   RL  +L E   K    I  Q ++K +S FR++++     
Sbjct: 687 SVVNKDITQLVELRTEDQRWLRLLELLGEWYQKGKILIFVQSQDKCDSLFRNLLK----- 741

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
              F      +HG     D+ES +  FK   C L+IAT+V   G+DV D  ++I  +A +
Sbjct: 742 ---FGYPCLSLHGAKDQTDRESTISDFKTNVCNLMIATSVAARGLDVKDLELVINYDAPN 798

Query: 571 FGLAQLHQLRGRVGRGEEISSCILL-------YHPPLSKNSYTRLSV----LKNTEDGFL 619
                +H++ GR GR       I         Y P L K       V    LK   DGF+
Sbjct: 799 HYEDYVHRV-GRTGRAGRKGCAITFISEDDARYAPDLVKALELSEQVVPQDLKALADGFM 857


>gi|56552817|ref|YP_163656.1| primosome assembly protein PriA [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56544391|gb|AAV90545.1| primosomal protein N' [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 722

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 108/230 (46%), Gaps = 29/230 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           +++Q  A + + + +++K+    +L G  GSGKT V   A+A  +  G Q++I+ P   L
Sbjct: 191 SETQSKAAEILKESIAKKSFETFLLDGVTGSGKTEVYFEAIAQTLRDGKQSLILLPEIAL 250

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            +    F+K++         +   ++ QA RRK  + I  GQA ++IG   ALF   + +
Sbjct: 251 TE---PFLKRFQARFGCEPVVWHSDLSQARRRKNWQAIVTGQAKVVIGARSALF---LPF 304

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLGD 442
             + L+IVDE H    +Q   +  +A    V+          L TATP   +++   LG+
Sbjct: 305 KAIGLIIVDEAHETSFKQEDGVCYQARDVAVMRAKFENISVILATATPAIESVMQVRLGN 364

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
               ++ E+  G   + T+         VI   +  L++G+   W+ P +
Sbjct: 365 YKEIRLAER-HGSAGLPTI--------HVINMTEQALAKGR---WLAPPL 402


>gi|260753456|ref|YP_003226349.1| primosome assembly protein PriA [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552819|gb|ACV75765.1| primosomal protein N' [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 722

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 108/230 (46%), Gaps = 29/230 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           +++Q  A + + + +++K+    +L G  GSGKT V   A+A  +  G Q++I+ P   L
Sbjct: 191 SETQSKAAEILKESIAKKSFETFLLDGVTGSGKTEVYFEAIAQTLRDGKQSLILLPEIAL 250

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            +    F+K++         +   ++ QA RRK  + I  GQA ++IG   ALF   + +
Sbjct: 251 TE---PFLKRFQGRFGCEPVVWHSDLSQARRRKNWQAIVTGQAKVVIGARSALF---LPF 304

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLGD 442
             + L+IVDE H    +Q   +  +A    V+          L TATP   +++   LG+
Sbjct: 305 KAIGLIIVDEAHETSFKQEDGVCYQARDVAVMRAKFENIPVILATATPAIESVMQVRLGN 364

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
               ++ E+  G   + T+         VI   +  L++G+   W+ P +
Sbjct: 365 YKEIRLAER-HGSAGLPTI--------HVINMTEQALAKGR---WLAPPL 402


>gi|301155636|emb|CBW15104.1| Primosome factor n' (replication factor Y) [Haemophilus
           parainfluenzae T3T1]
          Length = 729

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 33/209 (15%)

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPF-------SPTKSQESAIKDILQDMSQKNRM 294
           L  K + +EI +P   E K  Q+ L + P        +  K Q  A   +L    Q+   
Sbjct: 165 LKGKHYVEEIIVP--TEQKSWQQALGDNPLVNLDNRLTLNKQQALAFSQLL---FQEGFN 219

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVE 353
           + +L+G  GSGKT + L  +   ++ G Q +++ P IG+  Q     ++++     + ++
Sbjct: 220 VWLLEGVTGSGKTEIYLQYIEEVLKKGKQVLVLVPEIGLTPQT----VRRFQARFNVEID 275

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR- 411
           ++  N+    R    ER   GQ+ I+IGT  ALF    Q+  L L+I+DE+H    +Q+ 
Sbjct: 276 VLHSNLNDTQRLNVWERARTGQSAIVIGTRSALF---TQFSDLGLIILDEEHDGSFKQQD 332

Query: 412 ----------LKLTQKATAPHVLLMTATP 430
                     + L QK   P +LL +ATP
Sbjct: 333 GWRYHARDLGIVLAQKLNIP-ILLGSATP 360


>gi|153007483|ref|YP_001368698.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559371|gb|ABS12869.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 644

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 141/330 (42%), Gaps = 42/330 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEGELRFSDAGAPLAMIIAPTRELALQVRRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     AHI++GT    +D I        +   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GAHIVVGTPGRLRDHITRDALDMSELRAVVLDE 156

Query: 400 VDEQHRFGVQQRLK-LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKIT--EKPAGR 455
            DE    G ++ L+ +  +A      LM +  +P+ +  L      D  ++T   + +  
Sbjct: 157 ADEMLDMGFREDLEFILGEAPKDRRTLMFSATVPKPIAQLAKRFQNDALRLTVQSETSQH 216

Query: 456 KPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             I  V +P+    R   +I  L  +  + + +   C         + R  V+   S   
Sbjct: 217 ADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRLS 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +  +  
Sbjct: 266 NRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPNNP 325

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
              LH+  GR GR     +C+L+   P S+
Sbjct: 326 ETMLHR-SGRTGRAGRKGTCVLVV--PFSR 352


>gi|329114534|ref|ZP_08243293.1| Primosomal protein N [Acetobacter pomorum DM001]
 gi|326696014|gb|EGE47696.1| Primosomal protein N [Acetobacter pomorum DM001]
          Length = 775

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 72/129 (55%), Gaps = 7/129 (5%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+SA   + Q +++    + +L+G  GSGKT + L A+AA +E G QA+I+ P   L+ Q
Sbjct: 247 QQSAAMALRQTVTENRFSVTLLEGVTGSGKTEIYLEAIAACLEQGKQALILLPEIALSAQ 306

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKL 395
              +++++++   +   +    + Q  RR      A G A +I+G   ALF   + ++ L
Sbjct: 307 ---WMERFSRRFGVQPAVWHSEIGQRARRLTWLGAADGSASVIVGARSALF---LPFHNL 360

Query: 396 ILVIVDEQH 404
            L+IVDE+H
Sbjct: 361 GLIIVDEEH 369


>gi|254514732|ref|ZP_05126793.1| RNA helicase DbpA [gamma proteobacterium NOR5-3]
 gi|219676975|gb|EED33340.1| RNA helicase DbpA [gamma proteobacterium NOR5-3]
          Length = 462

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 132/308 (42%), Gaps = 28/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQ-HYEFIKKYTQNTQIIV 352
           I +   GSGKT    I +   +     G QA+++ P   LA+Q   E  +  ++   I +
Sbjct: 45  IARARTGSGKTAAFGIGLLQTINPRFFGVQALVLCPTRELAEQVSGELRRLASRMANIKL 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   +  +LE   HG AHI++GT     D +Q   L L     +++DE  R  
Sbjct: 105 VTLCGGKPFGPQVGSLE---HG-AHIVVGTPGRILDHLQRKTLSLDGLKVLVLDEADRM- 159

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          +++ TP  R TL+ ++    +I K++        + TV   + 
Sbjct: 160 ------LDMGFADSMESIISETPKSRQTLLFSATYPENIRKMSASIQRSPTMVTVDEDVG 213

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------RSVVERFNSLHEHFTSSIAI 520
             DEVIE+L   + + ++   +    E  + +N       +   +    + + +      
Sbjct: 214 HADEVIEQLFFEVQKHERNTTLLALFEHYRPANAVVFCNTKKQCDEVAKILQEYDIEARA 273

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG +   +++ V+  F N +C +L+AT V   G+D+   +++I           +H++ 
Sbjct: 274 IHGDLEQRERDQVLVQFSNNSCPVLVATDVAARGLDIKALAMVINYELPRDPDVYVHRI- 332

Query: 581 GRVGRGEE 588
           GR GR  E
Sbjct: 333 GRTGRAGE 340


>gi|163742248|ref|ZP_02149636.1| primosome assembly protein PriA [Phaeobacter gallaeciensis 2.10]
 gi|161384578|gb|EDQ08959.1| primosome assembly protein PriA [Phaeobacter gallaeciensis 2.10]
          Length = 755

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 19/169 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q +A   + + ++       +L+G  GSGKT V L A+AA + AG QA+++ P I +
Sbjct: 222 TDDQAAAANTLGEGVAGGRYGTTLLKGVTGSGKTEVYLEAVAATLRAGRQALVLLPEIAL 281

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
            A    EF+K+  Q                 RR+    +  G+A ++IG   ALF   + 
Sbjct: 282 TA----EFLKRVEQRFGATPAEWHSGATMTERRRVWRMVGQGKAQLVIGARSALF---LP 334

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKA----------TAPHVLLMTATP 430
           Y  L L+IVDE+H    +Q   +   A           +  V+L +ATP
Sbjct: 335 YQNLGLIIVDEEHDISYKQDEGVCYNARDMAVLRAAMCSAQVVLASATP 383


>gi|239830975|ref|ZP_04679304.1| DEAD-box ATP-dependent RNA helicase ydbR [Ochrobactrum intermedium
           LMG 3301]
 gi|239823242|gb|EEQ94810.1| DEAD-box ATP-dependent RNA helicase ydbR [Ochrobactrum intermedium
           LMG 3301]
          Length = 641

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 142/331 (42%), Gaps = 44/331 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     AHI++GT    +D I        +   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GAHIVVGTPGRLRDHITRDALDMSELRAVVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKIT--EKPAG 454
            DE    G ++ L+  L +       L+ +AT +P+ +  L      D  ++T   + + 
Sbjct: 157 ADEMLDMGFREDLEFILGEAPENRRTLMFSAT-VPKPIAQLAKRFQNDALRLTVQSETSQ 215

Query: 455 RKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
              I  V +P+    R   +I  L  +  + + +   C         + R  V+   S  
Sbjct: 216 HADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRL 264

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +  + 
Sbjct: 265 SNRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPNN 324

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
               LH+  GR GR     +C+L+   P S+
Sbjct: 325 PETMLHR-SGRTGRAGRKGTCVLVV--PFSR 352


>gi|169335734|ref|ZP_02862927.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258472|gb|EDS72438.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM
           17244]
          Length = 510

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 160/378 (42%), Gaps = 68/378 (17%)

Query: 250 EIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           EI + IN       ++L  + F+ PT  Q  AI  I   +        I +   G+GKT+
Sbjct: 10  EINLDIN-------RVLDEMGFTNPTDIQNKAIPAIRSGVDV------IGKSQTGTGKTI 56

Query: 309 VALIAMAAAVE-----AGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQA 362
              I     ++        Q +I+ P   LAQQ Y  IKK T+   +I V  I G +   
Sbjct: 57  AFAIPAIEKIDIEQEKPTAQVLIICPTRELAQQGYAEIKKLTKYMPEIKVVDIYGGVSME 116

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKL 414
            +   L++     AHI+IGT    +D ++   L L     V++DE       G ++ +  
Sbjct: 117 RQISKLKK-----AHIVIGTPGRIKDHLKRRTLKLQNIKMVVLDEADEMLSMGFKEDIDT 171

Query: 415 TQKATAP---HVLLMTAT--PIPRTLVLTSLGD-----IDISKITEKPAGRKPIKTVIIP 464
             K TAP     +L +AT  P    ++ T L +     ID  ++T     +  I    +P
Sbjct: 172 ILK-TAPDTRQTVLFSATMPPAIMNIIDTFLKNPLLIQIDKEQVTVNKIAQNYID---VP 227

Query: 465 INRIDEVIERLKVVLSEGKKAYWI-CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             +  EV+  L  +   G K   I C         N + +V+           S   +HG
Sbjct: 228 KGKKKEVLNLL--LHYYGSKLTIIFC---------NTKRMVDDLTKFLRKNGFSAECLHG 276

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQL 579
            +   ++  VM +FKN    +L+AT V   GIDV D   +I     +N+E++    +H++
Sbjct: 277 DIRQNERSRVMSNFKNAKTPILVATDVAARGIDVKDVEYVINYDIPQNSEYY----IHRI 332

Query: 580 RGRVGRGEEISSCILLYH 597
            GR  RG +  + I + +
Sbjct: 333 -GRTARGGKTGTSITMTN 349


>gi|300024724|ref|YP_003757335.1| primosomal protein N' [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526545|gb|ADJ25014.1| primosomal protein N' [Hyphomicrobium denitrificans ATCC 51888]
          Length = 744

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 7/146 (4%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  A+  ++  +  KN  + +L G  GSGKT V   A+A A+E G QA+IM P   L
Sbjct: 211 TDKQAQAVATLVAAVDAKNFSVTLLDGVTGSGKTEVYFEAVARALEVGDQALIMLPEIAL 270

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
             Q   F+ ++ Q            +  A R +  + +A G    ++G   ALF   + +
Sbjct: 271 TSQ---FLDRFAQRFGAPPVEWHSALSPAERGRIWKGVARGDVRCVVGARSALF---LPF 324

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKA 418
            +L L+++DE+H  G +Q  ++  +A
Sbjct: 325 VQLGLIVIDEEHDQGFKQEDRVHYQA 350


>gi|240103967|ref|YP_002960276.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Thermococcus
           gammatolerans EJ3]
 gi|239911521|gb|ACS34412.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Thermococcus
           gammatolerans EJ3]
          Length = 403

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 140/350 (40%), Gaps = 74/350 (21%)

Query: 290 QKNRMLRILQGDV--------GSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHY 338
           Q+  + R+L+G+V        G+GKT    + +  A+   E   QA+I+ P   LA Q  
Sbjct: 39  QREVIPRLLEGEVDIIGQSQTGTGKTAAFALPIIEAIDPNEKTVQAIILTPTRELALQVA 98

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL- 397
             IK      ++ V  I G  P   + +ALER      H+++GT     D +    L L 
Sbjct: 99  NEIKSLRGKKRVYVYAIYGGQPIGPQIRALER----GVHVVVGTPGRVLDHLNRGTLDLS 154

Query: 398 ----VIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                ++DE  R      V    ++ ++A     +LM +  +P  ++L +       K  
Sbjct: 155 SVRFFVLDEADRMLDMGFVDDIEEIMRRAPQEKRILMFSATMPMGILLLA------KKYM 208

Query: 450 EKPAGRKPIKTVIIPINRIDEVI-----------------ERLKVVLSEGKKAYWICPQI 492
             P         +I ++R DEV+                 E+LK VL EG      C   
Sbjct: 209 RNPE--------VILVSR-DEVVPEMVDQEYVEVLPARKYEKLKEVLGEGFYGIIFCHTK 259

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E +E + R   + F +           ++G MS   +E     FK G   +L+AT V  
Sbjct: 260 RETRELSERLRRDSFRA---------DALNGDMSQAARERTFGRFKEGKINVLVATDVAA 310

Query: 553 VGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G+DV + S +I      N E +    +H++ GR GR  +    I    P
Sbjct: 311 RGLDVREISHVINYSLPMNTEQY----IHRI-GRTGRMGKRGKAITFLKP 355


>gi|18395852|ref|NP_566141.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|16226725|gb|AAL16243.1|AF428313_1 AT3g01540/F4P13_9 [Arabidopsis thaliana]
 gi|15215694|gb|AAK91393.1| AT3g01540/F4P13_9 [Arabidopsis thaliana]
 gi|32306509|gb|AAP78938.1| At3g01540 [Arabidopsis thaliana]
 gi|332640163|gb|AEE73684.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
          Length = 618

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 145/340 (42%), Gaps = 48/340 (14%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI        +      G   ++++P   LA Q  E   K+ ++++I    
Sbjct: 204 TGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTC 263

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---- 405
           + G  P+  + + LER     A I++ T     D ++  ++ L     +++DE  R    
Sbjct: 264 LYGGAPKGPQLRDLER----GADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDM 319

Query: 406 -FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            F  Q R  + +  T    L+ TAT  P+ +      +L +   ++I  + E  A +   
Sbjct: 320 GFEPQIRKIVKEIPTKRQTLMYTAT-WPKGVRKIAADLLVNPAQVNIGNVDELVANKSIT 378

Query: 459 K--TVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           +   V+ P+    E   RL+ +L     G K    C        S  R   +   +L   
Sbjct: 379 QHIEVVAPM----EKQRRLEQILRSQEPGSKVIIFC--------STKRMCDQLTRNLTRQ 426

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F +  A IHG  S  ++++V++ F++G   +L+AT V   G+DV D   ++  +  +   
Sbjct: 427 FGA--AAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVE 484

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
             +H++ GR GR          +    SK++   + +L+ 
Sbjct: 485 DYVHRI-GRTGRAGATGQAFTFFGDQDSKHASDLIKILEG 523


>gi|326634448|pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
          Length = 395

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 155/371 (41%), Gaps = 63/371 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           P+K QE A+  +L +  +      I Q   G+GKT    + M   V   +A  QA+ +AP
Sbjct: 28  PSKIQERALPLLLHNPPRN----MIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 83

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E +++  + T+I  ++I  +        + E+     A +I+GT     D 
Sbjct: 84  SRELARQTLEVVQEMGKFTKITSQLIVPD--------SFEKNKQINAQVIVGTPGTVLDL 135

Query: 390 I-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +     Q  K+ + ++DE      QQ L   Q       L     P    LVL S     
Sbjct: 136 MRRKLMQLQKIKIFVLDEADNMLDQQGLG-DQCIRVKRFL-----PKDTQLVLFS----- 184

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----- 499
               T   A R+  K ++   N ++  ++  +V +   K+ Y  C    +K +       
Sbjct: 185 ---ATFADAVRQYAKKIVPNANTLE--LQTNEVNVDAIKQLYMDCKNEADKFDVLTELYG 239

Query: 500 ---------FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                    F +  +  N L+    S    ++I+HG +   +++ ++D F+ G  K+LI 
Sbjct: 240 LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLIT 299

Query: 548 TTVIEVGIDVVDASIII------IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           T V+  GID+   S+++      + N +      +H++ GR GR       I   H    
Sbjct: 300 TNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRI-GRTGRFGRKGVAISFVH---D 355

Query: 602 KNSYTRLSVLK 612
           KNS+  LS ++
Sbjct: 356 KNSFNILSAIQ 366


>gi|298484971|ref|ZP_07003069.1| ATP-independent RNA helicase DbpA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160525|gb|EFI01548.1| ATP-independent RNA helicase DbpA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 473

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 187/428 (43%), Gaps = 57/428 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  ++   I V
Sbjct: 59  IAQAKTGSGKTAAFGIGLLNPINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKV 118

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 119 LTLCGGVSFGPQIGSLE---HG-AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRM- 173

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++   + I +++ K   R P +TV +   
Sbjct: 174 ------LDMGFYDAIADIIEQTPQRRQTLLFSATYPVGIKQLSSKFM-RDP-QTVKVEAL 225

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAI 520
             D  IE++   +S  ++   +   +   + ++   F    ++   + +H T+   S   
Sbjct: 226 HADSQIEQIFYEISPEQRLEAVVKVLGHFRPASCVAFCFTKQQVQEVVDHLTAKGMSAVG 285

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++ V+  F N +  +L+AT V   G+D +DA  ++I N E    +++H  R
Sbjct: 286 LHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVI-NVELARDSEIHIHR 343

Query: 581 -GRVGRGEEISSCILLYHP---------------PLSKNSYTRLSV-----LKNTEDGFL 619
            GR GR  E    + L  P               PL+   Y +LSV     L  T     
Sbjct: 344 VGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQQYDQLSVKEGGKLLPTMTTLC 403

Query: 620 IAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAKHILTQDPDLTS 675
           I      + + G+ILG    ++G+    + +  + D  + + + R  AK  L +  +   
Sbjct: 404 IGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALERLNN-GK 462

Query: 676 VRGQSIRI 683
           ++G+S+R+
Sbjct: 463 IKGKSLRV 470


>gi|282878897|ref|ZP_06287661.1| DEAD/DEAH box helicase [Prevotella buccalis ATCC 35310]
 gi|281298896|gb|EFA91301.1| DEAD/DEAH box helicase [Prevotella buccalis ATCC 35310]
          Length = 439

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 134/319 (42%), Gaps = 47/319 (14%)

Query: 303 GSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GSGKTL  L+ +   +E      QAV++ P   LA Q    +K  +  T +      G  
Sbjct: 40  GSGKTLAYLLPLIQKIEVSRDALQAVVIVPNRELALQSSSILKALS--TPVRSYACYGGR 97

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHR---FGVQQR 411
           P     K L++I   Q  II  T     D +    ++      V++DE  +    G Q  
Sbjct: 98  PAMDEHKQLKQI---QPQIIFATPGRLNDHLSKGNIVTDNTQYVVIDEFDKCLEMGFQDE 154

Query: 412 LK--LTQKATAPHVLLMTAT---PIPRTLVLTSLGDIDISKITEKPAGRK-PIKTVIIPI 465
           +K  LTQ       +L++AT    IP  + +  L  +D   + E  A ++  I  V  P 
Sbjct: 155 MKEVLTQLHAIKQRILLSATDADSIPEFVNVNRLQRLDY--LDEVNATKQIQIFAVSSPD 212

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS-LHEHFTSSIAIIHGR 524
               E + +L +         ++          N+R   ER +  L EH  SS  + HG 
Sbjct: 213 KDKLETLSKLLLTFDNQSSIVFV----------NYRDSAERIHKYLQEHRFSS-TVFHGG 261

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQL 579
           +    +E  +  F NG+  +L++T +   G+D+ D S I+     H+ L++     +H++
Sbjct: 262 LDQKQREDSLYQFSNGSVNVLVSTDLASRGLDIPDVSNIV-----HYHLSEHEDGYIHRI 316

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR  R ++     L+  P
Sbjct: 317 -GRTARWDKKGKSFLIIGP 334


>gi|195439780|ref|XP_002067737.1| GK12550 [Drosophila willistoni]
 gi|194163822|gb|EDW78723.1| GK12550 [Drosophila willistoni]
          Length = 800

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 138/325 (42%), Gaps = 49/325 (15%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  NTQ+   
Sbjct: 180 TGSGKTLAYILPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVASEFGSNTQVRNT 239

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
            I G  P+  + + LER       I+I T     D     +    +   +++DE  R   
Sbjct: 240 CIFGGAPKGQQARDLER----GVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLD 295

Query: 407 -GVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            G + ++ K+ Q+      +LM +   P+ +       L +   ++I  ++   +    I
Sbjct: 296 MGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSL--SANHNI 353

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS- 517
           + ++   +  +++++ + ++     ++        E K   F    +R + +  + +   
Sbjct: 354 RQIVDVCDESEKIVKLINLLTDISAES--------ETKTIIFVETKKRVDEITRNISRQG 405

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHF 571
                IHG  S  +++ V+ SF+NG   +L+AT V   G+DV D   +I      N+E +
Sbjct: 406 WRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDY 465

Query: 572 GLAQLHQLRGRVGRGEEISSCILLY 596
               +H++ GR GR     +   L+
Sbjct: 466 ----VHRI-GRTGRSNNTGTAYTLF 485


>gi|227822081|ref|YP_002826052.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
 gi|227341081|gb|ACP25299.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
          Length = 501

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 150/353 (42%), Gaps = 50/353 (14%)

Query: 261 IAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++QK+L  +      +PT  Q  AI   LQ    +  +L I Q   G+GKT   ++ M  
Sbjct: 9   LSQKVLSAVTDAGYATPTPIQAGAIPPALQ----RRDILGIAQ--TGTGKTASFVLPMLT 62

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q  E   KY +N ++ + ++ G +    + + LER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLER 122

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-L 424
                A ++I T     D  +  KL++     +++DE  R        +      P +  
Sbjct: 123 ----GADVLICTPGRLLDHFERGKLLMTGVEILVIDEADR--------MLDMGFIPDIER 170

Query: 425 LMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           +    P  R TL  ++    +I K+ ++         V  P +  + V +R   V + GK
Sbjct: 171 IAKLIPFTRQTLFFSATMPPEIQKLADRFLQNPERVEVARPASTANTVTQRF--VAAHGK 228

Query: 484 K-------AYWICPQIEEKKESNF----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
                      I  Q E K    F    + V E F SL  H   S+  +HG M    + +
Sbjct: 229 DYEKRAVLRDLIRAQGELKNAIIFCNRKKDVAELFRSLDRH-GFSVGALHGDMDQRSRMA 287

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++ +FK+G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR
Sbjct: 288 MLANFKDGNIQLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGR 339


>gi|163738335|ref|ZP_02145750.1| primosomal protein N' [Phaeobacter gallaeciensis BS107]
 gi|161388256|gb|EDQ12610.1| primosomal protein N' [Phaeobacter gallaeciensis BS107]
          Length = 755

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 19/169 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T+ Q +A   + + ++       +L+G  GSGKT V L A+AA + AG QA+++ P I +
Sbjct: 222 TEDQAAAANTLGEGVAGGRYGTTLLKGVTGSGKTEVYLEAVAATLRAGRQALVLLPEIAL 281

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
            A    EF+K+  Q                 RR+    +  G+A ++IG   ALF   + 
Sbjct: 282 TA----EFLKRVEQRFGATPAEWHSGATMTERRRVWRMVGQGKAQLVIGARSALF---LP 334

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKA----------TAPHVLLMTATP 430
           Y  L L+IVDE+H    +Q   +   A           +  V+L +ATP
Sbjct: 335 YQNLGLIIVDEEHDTSYKQDEGVCYNARDMAVLRAAMCSAQVVLASATP 383


>gi|150391484|ref|YP_001321533.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951346|gb|ABR49874.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 484

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 147/349 (42%), Gaps = 46/349 (13%)

Query: 260 KIAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           +++ ++L++I      SPTK Q+  I  IL+          I++   GSGKT    I + 
Sbjct: 10  QLSDELLKSISMLNFESPTKVQQQVIPAILEHKDI------IVKSQTGSGKTAAFAIPIC 63

Query: 316 AAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
             V   E   QA+++ P   LA Q  E +    +  ++ V  + G  P  H+ K L++  
Sbjct: 64  QLVDWDENKPQALVLVPTRELAIQVKEDMFNIGRFKRLKVAAVYGKAPFYHQEKELKQ-- 121

Query: 373 HGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFG-VQQRLKLTQKATAPHV 423
             + H+++GT     D +        Q   L++   DE    G V Q   + +  +   V
Sbjct: 122 --KTHVVVGTPGRIIDHMEKGTFDTSQIKYLVIDEADEMFNMGFVDQIETIIKDLSKKRV 179

Query: 424 LLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            ++ +  +P    TL    + D   ++I E+ +           ++RI +  ER  V   
Sbjct: 180 TMLLSATMPSAIETLSNRYMKDPIHAEIEEESSA----------VDRISQ--ERYTVEYR 227

Query: 481 EGKKAYWICPQIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           +  K       +E         N +  V+  N        +   IHG M   D+  VM+ 
Sbjct: 228 DKMKLLSDITIVENPDSCIIFCNTKQRVDEVNDELIRLNYTCEKIHGGMEQRDRVRVMNE 287

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           FK G  + L+AT V   GID+ + S++I  +      + +H++ GR GR
Sbjct: 288 FKQGYFRYLVATDVAARGIDIDNISLVINYDIPQDKESYVHRI-GRTGR 335


>gi|327439299|dbj|BAK15664.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 481

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 150/356 (42%), Gaps = 44/356 (12%)

Query: 263 QKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-- 319
           Q  L+++ +S PT+ Q+  +   L++         I++   GSGKT    I +   +E  
Sbjct: 15  QNALKDLDYSTPTEVQQKVLPHALKEQD------LIVKAQTGSGKTAAFAIPICENIEWI 68

Query: 320 -AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               QA+++ P   LA Q  E      +  +I    + G  P  +++  L++    + HI
Sbjct: 69  ENKPQALVLTPTRELAVQVKEEFTNIGRYKRIKATALYGKQPFRYQQDELKQ----KTHI 124

Query: 379 IIGTHALFQDSIQYYKLIL-----VIVDEQHRF----GVQQRLKLTQKATAPHVLLMTAT 429
            +GT     D I+   L L     V++DE         ++Q   +        V+++ + 
Sbjct: 125 AVGTPGRVLDHIEKGTLKLDKIRYVVLDEADEMLNMGFIEQVEAILAHVEHREVMMLFSA 184

Query: 430 PIPRT---LVLTSLGD-IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
            +P +   L    L D +DI   +E+ A +  I+  +I +   ++     K+ + E    
Sbjct: 185 TVPESIKKLASNYLNDPVDIEVQSEEAAPK--IEHAVIEVQDEEKTAAVEKIAVVENPDT 242

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTC 542
             I           F    +R ++LH++      S+  +HG M    +  VM+ +K G  
Sbjct: 243 CII-----------FCRTKDRVDALHDYLYDREYSVDKLHGGMDQSTRLLVMNDYKRGDF 291

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + L+AT V   GID+ + S++I  +      A +H+  GR GR  +    +    P
Sbjct: 292 RYLVATDVAARGIDIENISLVINYDLPMEKEAYVHRT-GRTGRAGKEGKAVTFVTP 346


>gi|256273404|gb|EEU08340.1| Dbp5p [Saccharomyces cerevisiae JAY291]
          Length = 449

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 157/371 (42%), Gaps = 63/371 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           P+K QE A+  +L +  +      I Q   G+GKT    + M   V   +A  QA+ +AP
Sbjct: 82  PSKIQERALPLLLHNPPRN----MIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 137

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E +++  + T+I  ++I  +        + E+     A +I+GT     D 
Sbjct: 138 SRELARQTLEVVQEMGKFTKITSQLIVPD--------SFEKNKQINAQVIVGTPGTVLDL 189

Query: 390 I-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +     Q  K+ + ++DE      QQ L   Q       L     P    LVL S    D
Sbjct: 190 MRRKLMQLQKIKIFVLDEADNMLDQQGLG-DQCIRVKRFL-----PKDTQLVLFSATFAD 243

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------- 497
                   A R+  K ++   N ++  ++  +V +   K+ Y  C    +K +       
Sbjct: 244 --------AVRQYAKKIVPNANTLE--LQTNEVNVDAIKQLYMDCKNEADKFDVLTELYG 293

Query: 498 -----SN--FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                S+  F +  +  N L+    S    ++I+HG +   +++ ++D F+ G  K+LI 
Sbjct: 294 LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLIT 353

Query: 548 TTVIEVGIDVVDASIII------IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           T V+  GID+   S+++      + N +      +H++ GR GR       I   H    
Sbjct: 354 TNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRI-GRTGRFGRKGVAISFVH---D 409

Query: 602 KNSYTRLSVLK 612
           KNS+  LS ++
Sbjct: 410 KNSFNILSAIQ 420


>gi|323346496|gb|EGA80783.1| Dbp5p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 458

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 154/371 (41%), Gaps = 63/371 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           P+K QE A+  +L +  +      I Q   G+GKT    + M   V   +A  QA+ +AP
Sbjct: 97  PSKIQERALPLLLHNPPRN----MIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 152

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E +++  + T+I  ++I  +        + E+     + +I+GT     D 
Sbjct: 153 SRELARQTLEVVQEMGKFTKITSQLIVPD--------SFEKNKQINSQVIVGTPGTVLDL 204

Query: 390 I-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +     Q  K+ + ++DE      QQ L          + +    P    LVL S    D
Sbjct: 205 MRRKLMQLQKIKIFVLDEADNMLDQQGL------GDQCIRVKRFLPKDTQLVLFSATFAD 258

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK--------- 495
                   A R+  K ++   N ++  ++  +V +   K+ Y  C    +K         
Sbjct: 259 --------AVRQYAKKIVPNANTLE--LQTNEVNVDAIKQLYMDCKNEADKFDVLTELYG 308

Query: 496 -----KESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                    F +  +  N L+    S    ++I+HG +   +++ ++D F+ G  K+LI 
Sbjct: 309 LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLIT 368

Query: 548 TTVIEVGIDVVDASIII------IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           T V+  GID+   S+++      + N +      +H++ GR GR       I   H    
Sbjct: 369 TNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRI-GRTGRFGRKGVAISFVH---D 424

Query: 602 KNSYTRLSVLK 612
           KNS+  LS ++
Sbjct: 425 KNSFNILSAIQ 435


>gi|256752284|ref|ZP_05493147.1| nucleic acid binding OB-fold tRNA/helicase-type [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748852|gb|EEU61893.1| nucleic acid binding OB-fold tRNA/helicase-type [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 237

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 117/248 (47%), Gaps = 19/248 (7%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKI-INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           PL   +   +GVG K +  L K+ IN          DLLFY P  + +R    KI ++  
Sbjct: 2   PLNLDIQYVKGVGPKRAKLLKKLGINTVE-------DLLFYFPKDYENRSDILKIEDLKV 54

Query: 67  ERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               T  GYI+      +  K    K+ + DGTG + L+++      +KN F  G +  +
Sbjct: 55  GEKQTFRGYIAGSPREIKTSKVIITKVPVKDGTGVVELVWY--NQPYIKNNFKIGEEYII 112

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182
            GK++    ++I+ +P  +   S+D  +N   I  +Y L  GL+ +  +KI+  AL   +
Sbjct: 113 NGKLQFKYGQLIVENP--VLEKSEDFKLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYV 170

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E+ +++ L +K    I  A   I+ P+      +   A+ R  Y EL   Q+AL L
Sbjct: 171 QEVEEFFDEEFLSEKGLMDIKNALININFPQNE---AYLEQAKYRFKYQELFLLQMALFL 227

Query: 243 MRKQFKKE 250
           M++  K++
Sbjct: 228 MKRSVKEK 235


>gi|30678365|ref|NP_850492.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|42572223|ref|NP_974206.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|79295442|ref|NP_001030619.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|108861885|sp|Q8H136|RH14_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 14
 gi|6016713|gb|AAF01539.1|AC009325_9 RNA helicase, DRH1 [Arabidopsis thaliana]
 gi|3149952|dbj|BAA28347.1| DRH1 [Arabidopsis thaliana]
 gi|332640162|gb|AEE73683.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
 gi|332640164|gb|AEE73685.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
 gi|332640165|gb|AEE73686.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
          Length = 619

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 145/340 (42%), Gaps = 48/340 (14%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI        +      G   ++++P   LA Q  E   K+ ++++I    
Sbjct: 204 TGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTC 263

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---- 405
           + G  P+  + + LER     A I++ T     D ++  ++ L     +++DE  R    
Sbjct: 264 LYGGAPKGPQLRDLER----GADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDM 319

Query: 406 -FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            F  Q R  + +  T    L+ TAT  P+ +      +L +   ++I  + E  A +   
Sbjct: 320 GFEPQIRKIVKEIPTKRQTLMYTAT-WPKGVRKIAADLLVNPAQVNIGNVDELVANKSIT 378

Query: 459 K--TVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           +   V+ P+    E   RL+ +L     G K    C        S  R   +   +L   
Sbjct: 379 QHIEVVAPM----EKQRRLEQILRSQEPGSKVIIFC--------STKRMCDQLTRNLTRQ 426

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F +  A IHG  S  ++++V++ F++G   +L+AT V   G+DV D   ++  +  +   
Sbjct: 427 FGA--AAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVE 484

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
             +H++ GR GR          +    SK++   + +L+ 
Sbjct: 485 DYVHRI-GRTGRAGATGQAFTFFGDQDSKHASDLIKILEG 523


>gi|78485292|ref|YP_391217.1| ATP-dependent RNA helicase DbpA [Thiomicrospira crunogena XCL-2]
 gi|78363578|gb|ABB41543.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
          Length = 468

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 142/321 (44%), Gaps = 46/321 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I QG  GSGKT    + +   ++      QA+++ P   LA Q    I++  +  Q I V
Sbjct: 51  IAQGKTGSGKTAAFGLGVLQKLDVKNFNVQALVLCPTRELADQVANEIRRLARQLQNIKV 110

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G MP   +  +L++     AHI++GT    +D ++  +L L     +++DE  R  
Sbjct: 111 LTLCGGMPMGPQISSLQQ----GAHIVVGTPGRIEDHLKKARLTLAEVKILVLDEADRML 166

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP-----AGRKP 457
             G Q  L   + Q       LL +AT  P+ +   S       +I  +P     A R  
Sbjct: 167 EMGFQPSLDTIIDQLPQQRQTLLFSAT-FPKQIEHIS------QRIMHQPVRVEVASRHD 219

Query: 458 IKTVIIPINRIDEVIERL---KVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSLHE 512
             T+     ++D   +RL   ++VL + K   +   C     KKE    +     ++L +
Sbjct: 220 DSTITQHFYQVDSTEQRLQALRLVLLQAKPESSVVFC---NTKKEVQMVA-----DTLRD 271

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              S++A+ HG +   D++  +  F N +  +L+AT V   G+D+     ++  +  H  
Sbjct: 272 AGFSALAL-HGDLEQRDRDQTLIQFANKSISILVATDVAARGLDIEALDAVVNFHLAHDP 330

Query: 573 LAQLHQLRGRVGR-GEEISSC 592
              +H++ GR GR G +  +C
Sbjct: 331 EVHVHRI-GRTGRAGSQGVAC 350


>gi|6324620|ref|NP_014689.1| Dbp5p [Saccharomyces cerevisiae S288c]
 gi|1708152|sp|P20449|DBP5_YEAST RecName: Full=ATP-dependent RNA helicase DBP5; AltName: Full=DEAD
           box protein 5; AltName: Full=Helicase CA5/6; AltName:
           Full=Ribonucleic acid-trafficking protein 8
 gi|160380623|sp|A6ZNQ1|DBP5_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP5; AltName: Full=DEAD
           box protein 5; AltName: Full=Helicase CA5/6; AltName:
           Full=Ribonucleic acid-trafficking protein 8
 gi|1353268|gb|AAB01679.1| Dbp5p [Saccharomyces cerevisiae]
 gi|1420175|emb|CAA99237.1| DBP5 [Saccharomyces cerevisiae]
 gi|151945675|gb|EDN63916.1| RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|285814935|tpg|DAA10828.1| TPA: Dbp5p [Saccharomyces cerevisiae S288c]
          Length = 482

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 157/371 (42%), Gaps = 63/371 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           P+K QE A+  +L +  +      I Q   G+GKT    + M   V   +A  QA+ +AP
Sbjct: 115 PSKIQERALPLLLHNPPRN----MIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 170

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E +++  + T+I  ++I  +        + E+     A +I+GT     D 
Sbjct: 171 SRELARQTLEVVQEMGKFTKITSQLIVPD--------SFEKNKQINAQVIVGTPGTVLDL 222

Query: 390 I-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +     Q  K+ + ++DE      QQ L          + +    P    LVL S    D
Sbjct: 223 MRRKLMQLQKIKIFVLDEADNMLDQQGL------GDQCIRVKRFLPKDTQLVLFSATFAD 276

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------- 497
                   A R+  K ++   N ++  ++  +V +   K+ Y  C    +K +       
Sbjct: 277 --------AVRQYAKKIVPNANTLE--LQTNEVNVDAIKQLYMDCKNEADKFDVLTELYG 326

Query: 498 -----SN--FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                S+  F +  +  N L+    S    ++I+HG +   +++ ++D F+ G  K+LI 
Sbjct: 327 LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLIT 386

Query: 548 TTVIEVGIDVVDASIII------IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           T V+  GID+   S+++      + N +      +H++ GR GR       I   H    
Sbjct: 387 TNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRI-GRTGRFGRKGVAISFVH---D 442

Query: 602 KNSYTRLSVLK 612
           KNS+  LS ++
Sbjct: 443 KNSFNILSAIQ 453


>gi|17065030|gb|AAL32669.1| RNA helicase, DRH1 [Arabidopsis thaliana]
          Length = 619

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 145/340 (42%), Gaps = 48/340 (14%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI        +      G   ++++P   LA Q  E   K+ ++++I    
Sbjct: 204 TGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTC 263

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---- 405
           + G  P+  + + LER     A I++ T     D ++  ++ L     +++DE  R    
Sbjct: 264 LYGGAPKGPQLRDLER----GADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDM 319

Query: 406 -FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            F  Q R  + +  T    L+ TAT  P+ +      +L +   ++I  + E  A +   
Sbjct: 320 GFEPQIRKIVKEIPTKRQTLMYTAT-WPKGVRKIAADLLVNPAQVNIGNVDELVANKSIT 378

Query: 459 K--TVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           +   V+ P+    E   RL+ +L     G K    C        S  R   +   +L   
Sbjct: 379 QHIEVVAPM----EKQRRLEQILRSQEPGSKVIIFC--------STKRMCDQLTRNLTRQ 426

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F +  A IHG  S  ++++V++ F++G   +L+AT V   G+DV D   ++  +  +   
Sbjct: 427 FGA--AAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVE 484

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
             +H++ GR GR          +    SK++   + +L+ 
Sbjct: 485 DYVHRI-GRTGRAGATGQAFTFFGDQDSKHASDLIKILEG 523


>gi|23397305|gb|AAN31934.1| putative RNA helicase, DRH1 [Arabidopsis thaliana]
          Length = 423

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 145/341 (42%), Gaps = 48/341 (14%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI        +      G   ++++P   LA Q  E   K+ ++++I    
Sbjct: 9   TGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTC 68

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---- 405
           + G  P+  + + LER     A I++ T     D ++  ++ L     +++DE  R    
Sbjct: 69  LYGGAPKGPQLRDLER----GADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDM 124

Query: 406 -FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            F  Q R  + +  T    L+ TAT  P+ +      +L +   ++I  + E  A +   
Sbjct: 125 GFEPQIRKIVKEIPTKRQTLMYTAT-WPKGVRKIAADLLVNPAQVNIGNVDELVANKSIT 183

Query: 459 K--TVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           +   V+ P+    E   RL+ +L     G K    C        S  R   +   +L   
Sbjct: 184 QHIEVVAPM----EKQRRLEQILRSQEPGSKVIIFC--------STKRMCDQLTRNLTRQ 231

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F +  A IHG  S  ++++V++ F++G   +L+AT V   G+DV D   ++  +  +   
Sbjct: 232 FGA--AAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVE 289

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
             +H++ GR GR          +    SK++   + +L+  
Sbjct: 290 DYVHRI-GRTGRAGATGQAFTFFGDQDSKHASDLIKILEGA 329


>gi|317127470|ref|YP_004093752.1| ATP-dependent DNA helicase RecQ [Bacillus cellulosilyticus DSM
           2522]
 gi|315472418|gb|ADU29021.1| ATP-dependent DNA helicase RecQ [Bacillus cellulosilyticus DSM
           2522]
          Length = 718

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 150/344 (43%), Gaps = 52/344 (15%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           QE  I +IL     +NR + I+    G GK++   I    ++   G  ++++P+  L + 
Sbjct: 22  QEQIITNILC----RNRTMGIMP--TGGGKSICYQIP---SLLLPGLTIVISPLISLMKD 72

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL----FQDSIQY 392
             + +K+   ++  I   ++ N    + R +L R  H +  + I    L    F +S+  
Sbjct: 73  QVDELKELGISSTFINSTLSNN--DVNERLSLMRQGHYKL-VYIAPERLDAPSFINSLSG 129

Query: 393 YKLILVIVDEQH---RFGVQQRLK-------LTQKATAPHVLLMTATPIPR-TLVLTSLG 441
            ++ LV +DE H   ++G   R         L +  T P VL +TAT  P  T  +    
Sbjct: 130 IEVSLVAIDEAHCLSQWGHDFRPSYMKIPHLLEKLDTKPVVLALTATSTPEVTDDICVAM 189

Query: 442 DIDISKITEKPAGRKPIK-TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--ES 498
            ID S + +    RK +   V+  I+R D  I+             +I   I++     +
Sbjct: 190 SIDKSFVVQTGFARKNLSFHVLKGIDR-DHYIKN------------YITRNIDQSGIIYA 236

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             R  VER  +L      S+   HG MS+ ++E + + F     K+++AT    +GI+  
Sbjct: 237 ATRKEVERIYTLLSSMNLSVGKYHGGMSNQEREFMQEQFVYDDLKVMVATNAFGMGINKS 296

Query: 559 DASIIIIENAEHF----GLAQLHQLRGRVGRGEEISSCILLYHP 598
           +   +I     H+     +   +Q  GR GR  E SSCILL+ P
Sbjct: 297 NVRFVI-----HYQIPRNIESYYQEAGRAGRDGEESSCILLFSP 335


>gi|91976935|ref|YP_569594.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
 gi|91683391|gb|ABE39693.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
          Length = 500

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 147/359 (40%), Gaps = 62/359 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI  +L     +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 23  TPTPIQEQAIPHVLA----RRDVLGIAQ--TGTGKTAAFVLPMLTMLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKEQFDKYGAGQKLTVALLIGGVSFGDQDVKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIP- 432
             D  +   L+L     +++DE  R         +++  KL         L  TAT  P 
Sbjct: 133 LLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERVCKLVPFTR--QTLFFTATMPPE 190

Query: 433 -RTLVLTSLGD---IDISK-------ITEK--PAGRKPIKTVIIPINRIDEVIERLKVVL 479
            R +  T L +   I++SK       +T+   P GR+P        +   E + RL    
Sbjct: 191 IRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREP--------HEKRETLRRLIRAA 242

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           ++ + A   C        +  R V     SL +H   S+  +HG M    + + +D F+ 
Sbjct: 243 TDLQNAIIFC--------NRKREVALLAKSLQKH-GFSVGALHGDMDQSARTAALDQFRK 293

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G   +L+A+ V   G+D+ + S +   +  H     +H++ GR GR   + + I +  P
Sbjct: 294 GELPILVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRV-GRTGRAGRLGTAISIVAP 351


>gi|242279272|ref|YP_002991401.1| primosomal protein N' [Desulfovibrio salexigens DSM 2638]
 gi|242122166|gb|ACS79862.1| primosomal protein N' [Desulfovibrio salexigens DSM 2638]
          Length = 780

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/436 (21%), Positives = 173/436 (39%), Gaps = 97/436 (22%)

Query: 250 EIGIPINVEGKIAQKILRNIP---FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           +IG P   E   A+K     P   F+P++ Q+ AI ++L  + +    +++L G  GSGK
Sbjct: 218 KIGPPPEEERNPAEKCAATGPKWDFTPSEQQQGAIDELLAALDEPKSTVKLLHGITGSGK 277

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLV + A    +E G   +++ P   LA   +  I     + +    +  G      +  
Sbjct: 278 TLVYMTAARKCLEQGKSVIVLVPEIALAYALWNGICPLFPDARKY--LYHGYQTPVRKEA 335

Query: 367 ALERIAHGQA-HIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA------ 418
               +A   +  +I+GT  ALF   +      L+IVDE+H    +Q  +L  +A      
Sbjct: 336 IFRALAEDDSPALIVGTRSALF---LPVRNPGLIIVDEEHDESYKQEERLPYQAKEVAYV 392

Query: 419 ----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-IIPINRID---- 469
               T   ++L +ATP  +T      G  ++  + EK  G+  +  V ++  + I     
Sbjct: 393 LAHMTGSLLVLGSATPDIKTFHAAQQGAFEVISM-EKRVGKSMLPAVKVVDTSAIKNPEQ 451

Query: 470 ----EVIERLKVVLSEGKKAYWI-----------CPQIEEKKESNFRSVVERFNSLHE-- 512
               E   RLK V+++G++A  +           C   EE  +    +V   ++   E  
Sbjct: 452 PFAPETEARLKEVVAKGEQAVVMLNRRGFSPLIYCTDCEEPFKCPHCNVSMTYHKGRERV 511

Query: 513 ---------HFTSSIAIIHG-----------RMSD--------------IDKES------ 532
                    HF    +I  G           R+ +              +D++S      
Sbjct: 512 ICHYCGNAYHFPLPCSICGGSNLLPLGGGTERLEEQVAKALPPETKILRMDRDSTRRQER 571

Query: 533 ---VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE------NAEHFGLAQ-----LHQ 578
              ++ SF  G  ++L+ T ++  G +    +++++       N   +  A+     L Q
Sbjct: 572 LDEILKSFARGDAQVLVGTQMLSKGHNFPGVTLVVVSEGDLGLNLPDYRSAERTFQLLVQ 631

Query: 579 LRGRVGRGEEISSCIL 594
           + GR GRGE+    I+
Sbjct: 632 VSGRAGRGEKPGEVII 647


>gi|163782068|ref|ZP_02177067.1| ATP-dependent RNA helicase DeaD [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882600|gb|EDP76105.1| ATP-dependent RNA helicase DeaD [Hydrogenivirga sp. 128-5-R1-1]
          Length = 361

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 152/359 (42%), Gaps = 36/359 (10%)

Query: 263 QKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           Q  L  I F+ PT  QESAI   L+          ++Q   G+GKT    I +   ++ G
Sbjct: 13  QNALEEIEFTKPTPIQESAIPVALEGKDL------LIQARTGTGKTGAFGIPIIEKLKRG 66

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+++AP   LA Q  + ++   + ++I V    G          LER       +++G
Sbjct: 67  ERALVLAPTRELAIQIRDHLRDLARFSKISVFSFYGGTSVGRDLSLLERRI---PDVVVG 123

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLK-LTQKATAPHVLLMTATPIP 432
           T    +D I+        +  L+L  VD     G ++ ++ +  K          +  +P
Sbjct: 124 TPGRIKDLIERGALKLDTFKYLVLDEVDIMLDMGFREDIEWIVSKLPEERQTFFVSATVP 183

Query: 433 RTL--VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           R +  +           I+ +    KP         RI+E++ R +  + + ++   I  
Sbjct: 184 REIREIARKFMKPGFEHISVESEELKP---------RINEIVVRTRSEIHKTEELERILR 234

Query: 491 QIEEKKESNF----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + +++K   F    R+  E   +L +    ++  +HG M+   +E+VM  F+N   K+LI
Sbjct: 235 ENDDEKIIVFVKMKRNAKELAYTLRKK-GYNVEALHGDMTQKRRETVMKLFRNNRVKVLI 293

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           AT V   G+D+   S+II  +         H++ GR GR     + I L  P   +N +
Sbjct: 294 ATDVASRGLDIEGVSMIINFHLPEDPRVYTHRI-GRTGRFGSEGTAISLVSPSEKRNLW 351


>gi|66043783|ref|YP_233624.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254490|gb|AAY35586.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 473

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 187/428 (43%), Gaps = 57/428 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  ++   I V
Sbjct: 59  IAQAKTGSGKTAAFGIGLLNPINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKV 118

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 119 LTLCGGVSFGPQIGSLE---HG-AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRM- 173

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++   + I +++ K   R P +TV +   
Sbjct: 174 ------LDMGFYDAIADIIEQTPQRRQTLLFSATYPVGIKQLSSKFM-RDP-QTVKVEAL 225

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAI 520
             D  IE++   +S  ++   +   +   + ++   F    ++   + +H T+   S   
Sbjct: 226 HADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVG 285

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++ V+  F N +  +L+AT V   G+D +DA  ++I N E    +++H  R
Sbjct: 286 LHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVI-NVELARDSEIHIHR 343

Query: 581 -GRVGRGEEISSCILLYHP---------------PLSKNSYTRLSVLKNTE-----DGFL 619
            GR GR  E    + L  P               PL+   Y RLS+ +  +         
Sbjct: 344 VGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQQYDRLSIKEGGKLLPAMTTLC 403

Query: 620 IAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAKHILTQDPDLTS 675
           I      + + G+ILG    ++G+    + +  + D  + + + R  AK  L +  +   
Sbjct: 404 IGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALERLNN-GK 462

Query: 676 VRGQSIRI 683
           ++G+S+R+
Sbjct: 463 IKGKSLRV 470


>gi|187920994|ref|YP_001890026.1| RecQ family ATP-dependent DNA helicase [Burkholderia phytofirmans
           PsJN]
 gi|187719432|gb|ACD20655.1| ATP-dependent DNA helicase, RecQ family [Burkholderia phytofirmans
           PsJN]
          Length = 588

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 139/335 (41%), Gaps = 68/335 (20%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK+L   +    A+   G  ++++P+  L +   + +      + I   ++   + +
Sbjct: 46  TGAGKSLCYQLP---ALHLDGTTLVVSPLIALMKDQADKLAA----SGIDCTVVNSTLRR 98

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYY---KLILVIVDEQH---RFGVQQ 410
              R+ALERIA G+  I+  T        F D ++ +   ++ LV+VDE H    +G   
Sbjct: 99  RAEREALERIAGGEGGIVFVTPERLTQPAFIDILRSHADRRIGLVVVDEAHCVSHWGHDF 158

Query: 411 RLKLTQKATA------PHVLLMTATPIPRTL--VLTSLGDIDISKITEKPAGRKPIKTVI 462
           R    + A+A      P VL +TAT     L  ++ SLG +   +I      R+ ++  +
Sbjct: 159 RPAFLEIASAVKAIGRPPVLALTATATAEVLEDIVRSLG-LREPRIVRTGTLRQNLRYRV 217

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV-----------------VE 505
           +            +V  + GK       +  E K    R +                 VE
Sbjct: 218 V------------QVSTAGGKDGG---TRAMEAKREQLRELTHSLAGTGIIYAATVADVE 262

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           R +        S++  HGR++   ++   + F +G  +L++AT    +GID  D   +I 
Sbjct: 263 RIHGWLVEAGESVSRYHGRLATNVRDEAQEQFMSGATRLMVATNAFGMGIDKADIRFVI- 321

Query: 566 ENAEHF----GLAQLHQLRGRVGRGEEISSCILLY 596
               H+     L   +Q  GR GR  E + C+LL+
Sbjct: 322 ----HYQMPGSLDAYYQETGRAGRDGEPADCVLLF 352


>gi|326634444|pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
 gi|326634446|pdb|3PEX|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
 gi|326634450|pdb|3PEZ|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
           And Adp
          Length = 395

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 155/371 (41%), Gaps = 63/371 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           P+K QE A+  +L +  +      I Q   G+GKT    + M   V   +A  QA+ +AP
Sbjct: 28  PSKIQERALPLLLHNPPRN----MIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 83

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E +++  + T+I  ++I  +        + E+     A +I+GT     D 
Sbjct: 84  SRELARQTLEVVQEMGKFTKITSQLIVPD--------SFEKNKQINAQVIVGTPGTVLDL 135

Query: 390 I-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +     Q  K+ + ++DE      QQ L   Q       L     P    LVL S     
Sbjct: 136 MRRKLMQLQKIKIFVLDEADNMLDQQGLG-DQCIRVKRFL-----PKDTQLVLFS----- 184

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----- 499
               T   A R+  K ++   N ++  ++  +V +   K+ Y  C    +K +       
Sbjct: 185 ---ATFADAVRQYAKKIVPNANTLE--LQTNEVNVDAIKQLYMDCKNEADKFDVLTELYG 239

Query: 500 ---------FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                    F +  +  N L+    S    ++I+HG +   +++ ++D F+ G  K+LI 
Sbjct: 240 VMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLIT 299

Query: 548 TTVIEVGIDVVDASIII------IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           T V+  GID+   S+++      + N +      +H++ GR GR       I   H    
Sbjct: 300 TNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRI-GRTGRFGRKGVAISFVH---D 355

Query: 602 KNSYTRLSVLK 612
           KNS+  LS ++
Sbjct: 356 KNSFNILSAIQ 366


>gi|110679362|ref|YP_682369.1| primosome assembly protein PriA [Roseobacter denitrificans OCh 114]
 gi|109455478|gb|ABG31683.1| primosomal protein N' [Roseobacter denitrificans OCh 114]
          Length = 720

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 36/223 (16%)

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKIL------RNIPF---SPTKSQESAIKDILQ 286
           G +A  L       ++G  + V+G +AQ  +      R++PF    P++  ++   D   
Sbjct: 134 GDLAFTLKELAEMADVGTSV-VKGLVAQGAVVEEDSPRDLPFPRLDPSRPGKALTADQAA 192

Query: 287 DMSQKNRMLR-------ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHY 338
             +Q  + +R       +L+G  GSGKT V L A+AAA+ AG QA+++ P I + A    
Sbjct: 193 GAAQLTQAVRSERYGTTLLRGVTGSGKTEVYLEAVAAALTAGRQALVLLPEIALTA---- 248

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLIL 397
           EF+ +  +                 RR+    +  G+A ++IG   ALF   + Y  L L
Sbjct: 249 EFLTRVQERFGARPAEWHSGATMTERRRIFRMVGQGEAQLVIGARSALF---LPYQNLGL 305

Query: 398 VIVDEQHRFGVQQRLKLTQKA----------TAPHVLLMTATP 430
           ++VDE+H    +Q   +   A              V+L +ATP
Sbjct: 306 IVVDEEHDTSYKQEEGVLYNARDMAVLRASICGAQVVLASATP 348


>gi|302189857|ref|ZP_07266530.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. syringae
           642]
          Length = 459

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 187/428 (43%), Gaps = 57/428 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  ++   I V
Sbjct: 45  IAQAKTGSGKTAAFGIGLLNPINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 105 LTLCGGVSFGPQIGSLE---HG-AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRM- 159

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++   + I +++ K   R P +TV +   
Sbjct: 160 ------LDMGFYDAIADIIEQTPQRRQTLLFSATYPVGIKQLSSKFM-RDP-QTVKVEAL 211

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAI 520
             D  IE++   +S  ++   +   +   + ++   F    ++   + +H T+   S   
Sbjct: 212 HADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVG 271

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++ V+  F N +  +L+AT V   G+D +DA  ++I N E    +++H  R
Sbjct: 272 LHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVI-NVELARDSEIHIHR 329

Query: 581 -GRVGRGEEISSCILLYHP---------------PLSKNSYTRLSVLKNTE-----DGFL 619
            GR GR  E    + L  P               PL+   Y RLS+ +  +         
Sbjct: 330 VGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQQYDRLSIKEGGKLLPAMTTLC 389

Query: 620 IAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAKHILTQDPDLTS 675
           I      + + G+ILG    ++G+    + +  + D  + + + R  AK  L +  +   
Sbjct: 390 IGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALERLNN-GK 448

Query: 676 VRGQSIRI 683
           ++G+S+R+
Sbjct: 449 IKGKSLRV 456


>gi|296446324|ref|ZP_06888270.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
 gi|296256225|gb|EFH03306.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
          Length = 419

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 148/365 (40%), Gaps = 55/365 (15%)

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++QK+L  +  S    PT  QE AI   LQ       +L I Q   G+GKT   ++ M  
Sbjct: 8   LSQKVLAAVETSGYTQPTPIQEQAIPPALQGRD----ILGIAQ--TGTGKTAAFVLPMLC 61

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q      KY  N ++ V ++ G M    +   + R
Sbjct: 62  RLEQGRARARMPRTLILEPTRELAAQVEASFAKYGANHKLNVALLIGGMAFGDQEAKIMR 121

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKA 418
                A ++I T     D     KL+L     +++DE  R         +++  KL    
Sbjct: 122 ----GADVLIATPGRLLDFFDRGKLLLTNIEILVIDEADRMLDMGFIPDIERICKLVPFT 177

Query: 419 TAPHVLLMTATPIPRTLVLTSL-----GDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                L  +AT  P    LT         I++++ +   A    I+  ++  +   E  E
Sbjct: 178 R--QTLFFSATMPPEITRLTEAFLHNPVRIEVARASSTAA---TIRQALVATHGHAEKRE 232

Query: 474 RLKVVLSEG---KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            L+ +L      K A   C        +  R V     SL +H  S+ A+ HG M    +
Sbjct: 233 TLRRLLRGAENFKNAIIFC--------NRKRDVAILHRSLDKHGFSAGAL-HGDMDQPAR 283

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            + +D+FKNG   LL+ + V   G+D+ D S +   +        +H++ GR GR     
Sbjct: 284 MASLDAFKNGDVALLVCSDVAARGLDIPDVSHVFNFDVPTHSEDYVHRI-GRTGRAGRSG 342

Query: 591 SCILL 595
           + + L
Sbjct: 343 TAVTL 347


>gi|257482474|ref|ZP_05636515.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330984618|gb|EGH82721.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009703|gb|EGH89759.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 459

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 187/428 (43%), Gaps = 57/428 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  ++   I V
Sbjct: 45  IAQAKTGSGKTAAFGIGLLNPINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 105 LTLCGGVSFGPQIGSLE---HG-AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRM- 159

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++   + I +++ K   R P +TV +   
Sbjct: 160 ------LDMGFYDAIADIIEQTPQRRQTLLFSATYPVGIKQLSSKFM-RDP-QTVKVEAL 211

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAI 520
             D  IE++   +S  ++   +   +   + ++   F    ++   + +H T+   S   
Sbjct: 212 HADSQIEQIFYEISPEQRLEAVVKVLGHFRPASCVAFCFTKQQVQEVVDHLTAKGMSAVG 271

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++ V+  F N +  +L+AT V   G+D +DA  ++I N E    +++H  R
Sbjct: 272 LHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVI-NVELARDSEIHIHR 329

Query: 581 -GRVGRGEEISSCILLYHP---------------PLSKNSYTRLSV-----LKNTEDGFL 619
            GR GR  E    + L  P               PL+   Y +LSV     L  T     
Sbjct: 330 VGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQQYDQLSVKEGGKLLPTMTTLC 389

Query: 620 IAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAKHILTQDPDLTS 675
           I      + + G+ILG    ++G+    + +  + D  + + + R  AK  L +  +   
Sbjct: 390 IGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALERLNN-GK 448

Query: 676 VRGQSIRI 683
           ++G+S+R+
Sbjct: 449 IKGKSLRV 456


>gi|293334655|ref|NP_001168054.1| hypothetical protein LOC100381784 [Zea mays]
 gi|223945725|gb|ACN26946.1| unknown [Zea mays]
          Length = 672

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 137/319 (42%), Gaps = 40/319 (12%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L+        +      G   ++++P   LA Q  +   K+ ++++I    
Sbjct: 203 TGSGKTLGYLLPGFILLKRLHHNSREGPTVLVLSPTRELATQIQDEAIKFGRSSRISSTC 262

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--- 406
           + G  P+  + + LER     A +++ T     D ++  K+ L     +++DE  R    
Sbjct: 263 LYGGAPKGPQLRELER----GADVVVATPGRLNDILEMNKVSLRQVSYLVLDEADRMLDM 318

Query: 407 GVQQRLKLTQKATAP--HVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
           G + +++   K   P    L+ TAT  P+ +      +L +   ++I    +  A +   
Sbjct: 319 GFEPQIRKIVKQIPPRRQTLMYTAT-WPKEVRKIASDLLNNPVQVNIGNTDQLVANKSIT 377

Query: 459 KTV-IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + V +IP       ++++      G K    C        S  R   +   +L   + +S
Sbjct: 378 QHVEVIPHMEKSRRLDQILRSQDPGSKIIIFC--------STKRMCDQLARNLSRQYGAS 429

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              IHG  S  +++SV++ F++G C +L+AT V   G+D+ D  I++  +        +H
Sbjct: 430 A--IHGDKSQAERDSVLNDFRSGRCPVLVATDVAARGLDIKDIRIVVNYDFPTGVEDYVH 487

Query: 578 QLRGRVGRGEEISSCILLY 596
           ++ GR GR     S    +
Sbjct: 488 RI-GRTGRAGATGSAYTFF 505


>gi|126134609|ref|XP_001383829.1| ATP-dependent RNA helicase CA3 of the DEAD/DEAH box family
           [Scheffersomyces stipitis CBS 6054]
 gi|146286101|sp|A3LRW2|DBP3_PICST RecName: Full=ATP-dependent RNA helicase DBP3
 gi|126095978|gb|ABN65800.1| ATP-dependent RNA helicase CA3 of the DEAD/DEAH box family
           [Scheffersomyces stipitis CBS 6054]
          Length = 526

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 139/324 (42%), Gaps = 44/324 (13%)

Query: 300 GDVGSGKTLV----ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            + GSGKT      A+  +    ++G   + ++P   LA Q Y+ +   T NT +    +
Sbjct: 160 AETGSGKTFAFGVPAINNILTLGKSGLSVLCISPTRELASQIYDNLVDLTSNTNVKCVCV 219

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---G 407
            G +P+  + K L+      A++++ T     D I+   + L     +++DE  R    G
Sbjct: 220 YGGVPKHDQVKNLK-----NANVVVATPGRLLDLIEDGAVNLGTVDYLVLDEADRMLETG 274

Query: 408 VQQRLKL----TQK---------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            +  +K     T+K         AT P  +   A+      V  S+GD D     E  A 
Sbjct: 275 FEDAIKAIIGGTKKENRQTLMFTATWPQEVRKLASTFMNQPVKVSIGDRD-----ELAAN 329

Query: 455 RK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           ++   I  VI P ++  +++  L+   S  KK   +      KKE+       R   L  
Sbjct: 330 KRITQIVEVIEPFDKEKKLLGLLRQYQSGSKKNDKVLIFALYKKEAT------RIEGLLR 383

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
             + ++A IHG +S   + + ++SFK G   LL+AT V   G+D+ +  ++I        
Sbjct: 384 RNSYNVAAIHGDLSQQQRTNALNSFKKGESSLLLATDVAARGLDIPNVKVVINLTFPLTV 443

Query: 573 LAQLHQLRGRVGRGEEISSCILLY 596
              +H++ GR GR  +  +   L+
Sbjct: 444 EDYVHRI-GRTGRAGQTGTAHTLF 466


>gi|298504304|gb|ADI83027.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens KN400]
          Length = 460

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 146/329 (44%), Gaps = 44/329 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQ---HYEFIKKYTQNTQI 350
           I +   GSGKT    I + + ++A     QA+++ P   LA Q       + ++T N +I
Sbjct: 45  IARAKTGSGKTAAFGIGLLSRLDALSFRVQALVLCPTRELADQVGKELRRLARFTDNIKI 104

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR 405
           +   I G +P   +  +LE   HG AH++IGT     D     S+    L  +++DE  R
Sbjct: 105 LT--ICGGVPFGPQLGSLE---HG-AHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADR 158

Query: 406 F---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLG----DIDISKITEKPAGRK 456
               G Q  +     A  P    LL +AT  P ++   S G     +++S   ++  G  
Sbjct: 159 MLDMGFQDDISALIAAAPPKRQTLLFSAT-YPDSIAAMSAGVQREPVEVS--VDEVHGEG 215

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            I+ V   ++   + IE ++ +L   +   A   C    E +E          N+L    
Sbjct: 216 AIEQVFYEVDS-GQRIEAVERILGHYRPESALIFCNTKLECQEVA--------NALAVRG 266

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            +++AI HG +   +++ V+  F N +  +L+AT V   G+D+ + S +I  N E     
Sbjct: 267 YAALAI-HGDLDQRERDRVLVRFANRSASVLVATDVAARGLDIKELSAVI--NYELTRNP 323

Query: 575 QLHQLR-GRVGRGEEISSCILLYHPPLSK 602
           ++H  R GR GR  E    + L  P  S+
Sbjct: 324 EVHTHRIGRTGRAGERGLAVSLVTPRESR 352


>gi|119188415|ref|XP_001244814.1| hypothetical protein CIMG_04255 [Coccidioides immitis RS]
 gi|118575174|sp|Q1DZK8|DBP3_COCIM RecName: Full=ATP-dependent RNA helicase DBP3
          Length = 464

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 136/327 (41%), Gaps = 45/327 (13%)

Query: 300 GDVGSGKTLV-ALIAMAAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   L  +   +E           A+I+ P   LA Q Y+ + +++    + 
Sbjct: 143 AETGSGKTLAFGLPCLRRVLELNNSETSCKPCALIITPTRELAVQIYDQLLRFSSAVDVG 202

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
           +  I G  P+ H+R+ +       A ++I T    +D     +I    +  +++DE  R 
Sbjct: 203 IACIYGGSPKDHQRREIR-----NASVVIATPGRLKDFQADQTINLSGVKYLVLDEADRM 257

Query: 407 -----------------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                              Q+R  +   AT P  +   A    +  V  ++GD    +  
Sbjct: 258 LDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAASFTKNPVTVTIGDSSDIRAN 317

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           ++    K +  V+ P  +   ++E L+     GK  + I      KKE+     VERF  
Sbjct: 318 KR---IKQMVEVLQPYEKDSRLLELLRRYQDGGKNNHRILVFCLYKKEA---MRVERFIG 371

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
             + F   +A IHG MS  ++   +++FK+G+  LL+AT V   G+D+    +++     
Sbjct: 372 -SKGF--KVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKLVLNVTFP 428

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY 596
                 +H++ GR GR       I L+
Sbjct: 429 LTIEDYVHRI-GRTGRAGAEGLAITLF 454


>gi|315122206|ref|YP_004062695.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495608|gb|ADR52207.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 459

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 130/306 (42%), Gaps = 34/306 (11%)

Query: 302 VGSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            G+GKT   ++ M   +E G       + +I+ P   LA Q  +  +KY +N  + + ++
Sbjct: 47  TGTGKTASFVLPMLTILEKGRARARMPRTLILEPTRELASQVADNFQKYGKNYNLNIALL 106

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQ 410
            G +P   + K LER     A ++I T     D     KL++     +++DE  R     
Sbjct: 107 IGGIPFETQNKKLER----GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR----- 157

Query: 411 RLKLTQKATAPHVLLMTA-TPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
              +      P +  +T+  P  R TL+ ++    ++ K++EK         V  P +  
Sbjct: 158 ---MLDMGFIPDIQSITSLIPFTRQTLLFSATMTEELQKVSEKFLQNPKRIEVNTPYSTA 214

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKES--------NFRSVVERFNSLHEHFTSSIAI 520
           + +         +  K + +  ++  ++++        N +  V       E    S+  
Sbjct: 215 ETIEHCFVATYPQYSKKFGLVQKLIREQDAIKNAIIFCNQKKDVASLCCALEKQGFSVCA 274

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG M    +  ++DSFK GT +L++A+ +   G+D+ D   +   +  +     +H++ 
Sbjct: 275 IHGNMDQRSRIKILDSFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRPENYIHRI- 333

Query: 581 GRVGRG 586
           GR GR 
Sbjct: 334 GRTGRA 339


>gi|297828586|ref|XP_002882175.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328015|gb|EFH58434.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 625

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 145/340 (42%), Gaps = 48/340 (14%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI        +      G   ++++P   LA Q  E   K+ ++++I    
Sbjct: 210 TGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTC 269

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---- 405
           + G  P+  + + LER     A I++ T     D ++  ++ L     +++DE  R    
Sbjct: 270 LYGGAPKGPQLRDLER----GADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDM 325

Query: 406 -FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            F  Q R  + +  T    L+ TAT  P+ +      +L +   ++I  + E  A +   
Sbjct: 326 GFEPQIRKIVKEIPTKRQTLMYTAT-WPKGVRKIAADLLVNPAQVNIGNVDELVANKSIT 384

Query: 459 K--TVIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           +   V+ P+    E   RL+ +L     G K    C        S  R   +   +L   
Sbjct: 385 QHIEVVAPM----EKQRRLEQILRSQEPGSKVIIFC--------STKRMCDQLTRNLTRQ 432

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F +  A IHG  S  ++++V++ F++G   +L+AT V   G+DV D   ++  +  +   
Sbjct: 433 FGA--AAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVE 490

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
             +H++ GR GR          +    SK++   + +L+ 
Sbjct: 491 DYVHRI-GRTGRAGATGQAFTFFGDQDSKHASDLIKILEG 529


>gi|50294444|ref|XP_449633.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661035|sp|Q6FJG1|FAL1_CANGA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49528947|emb|CAG62609.1| unnamed protein product [Candida glabrata]
          Length = 399

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 153/347 (44%), Gaps = 66/347 (19%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P+  Q  AI  I+   S K+    I Q   G+GKT    I M  A++      QA++++
Sbjct: 45  APSAIQSRAITQII---SGKDV---IAQAQSGTGKTATFTIGMLQAIDLKKHDLQALVLS 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +    +TG        K +++  HG   +I GT     D
Sbjct: 99  PTRELAAQIGKVVTNLGDYMNVKAYAMTGGKTMKDDLKKIQK--HG-CQVISGTPGRVLD 155

Query: 389 SIQYYKLI------LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT---LVLTS 439
            I+  +LI      ++++DE           L+      H +    T +PRT   +V+++
Sbjct: 156 MIKR-RLIETRHVQILVLDEADEL-------LSDTLGFKHQIYDIFTKLPRTSQVVVVSA 207

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I +IT+K     P+K ++          +R ++ L EG K Y++     EK+E  
Sbjct: 208 TMSPEILEITKKFMN-DPVKILV----------KRDEITL-EGIKQYYVNV---EKEEWK 252

Query: 500 FRSVVERFNSL-------------------HEHFTSSIAII--HGRMSDIDKESVMDSFK 538
           F ++ + ++SL                   H+   S+ A+I  HG M   +++ VM+ F+
Sbjct: 253 FDTLCDIYDSLTITQCVIFCNSKKKVDWLAHKLKQSNFAVISMHGDMKQDERDRVMNEFR 312

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            G  ++LI+T V   GIDV   S++I  +        +H++ GR GR
Sbjct: 313 TGQSRVLISTDVWARGIDVQQVSLVINYDLPEITENYVHRI-GRSGR 358


>gi|294054801|ref|YP_003548459.1| primosomal protein N' [Coraliomargarita akajimensis DSM 45221]
 gi|293614134|gb|ADE54289.1| primosomal protein N' [Coraliomargarita akajimensis DSM 45221]
          Length = 755

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 2/149 (1%)

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           AQ++   I    T  Q   +  + + +   +  +R+L G  GSGKT V L A+   V  G
Sbjct: 205 AQELKTEIRPELTAEQRVCVDSLFKAIDTNDFSVRLLHGVTGSGKTEVYLNAVERVVSRG 264

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           G  V + P   LA Q    ++   +   +   +   ++    R  A + +A G+AH+++G
Sbjct: 265 GGVVFLIPEVALAPQTVGRVRARLEARGVRTVVWHSHLSDGERYDAWKALASGEAHVVVG 324

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     +Q   L LVIVDE+H    +Q
Sbjct: 325 ARSAVFAPVQ--NLQLVIVDEEHEPSYKQ 351


>gi|224539395|ref|ZP_03679934.1| hypothetical protein BACCELL_04300 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518969|gb|EEF88074.1| hypothetical protein BACCELL_04300 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 447

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 144/365 (39%), Gaps = 56/365 (15%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-- 320
           Q ILRN+       Q + +++  ++  ++N+ L +L    GSGKTL  L+ +   ++   
Sbjct: 4   QDILRNLQIE----QLTPMQEATREAYRENKDL-VLLSPTGSGKTLAFLLPLVQTLKTDA 58

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G QAV++ P   LA Q     K  +  T        G  P     + ++ I      +I
Sbjct: 59  QGVQAVVLVPSRELALQIETVFK--SMGTPFKAMSCYGGRPAMEEHRTMKGI---HPSVI 113

Query: 380 IGTHALFQDSIQ-----YYKLILVIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTAT 429
           IGT     D ++        +  +++DE  +   FG    +   + Q  +    +L++AT
Sbjct: 114 IGTPGRMNDHLRKENFDAATVTTLVIDEFDKCLEFGFHDEMAEVIGQLPSLKKRILLSAT 173

Query: 430 PIPRTLVLTSLG-----DIDISKIT-------EKPAGRKPIKTVIIPINRIDEVIERLKV 477
                     +G       D S++        +  A R  +  V+ P     E +  L  
Sbjct: 174 DAEEIPQFAGVGGEDQLSADGSRLVKLNFLDPDALAPRLKLHKVVSPEKDKLETLYNLLC 233

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           VL       +           N+R  VER     +       + HG M   D+E  +  F
Sbjct: 234 VLGYHSTLVF----------CNYRESVERVTGYLQAKKFPCDMFHGGMEQPDRERALYKF 283

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQLHQLRGRVGRGEEISSC 592
           +NG+C +LI+T +   G+D+       IEN  H+ L     A  H+  GR  R E   + 
Sbjct: 284 RNGSCAVLISTDLAARGLDIPG-----IENVVHYHLPVNEEAYTHR-NGRTARWEADGNS 337

Query: 593 ILLYH 597
            L+ H
Sbjct: 338 YLILH 342


>gi|262195759|ref|YP_003266968.1| ATP-dependent DNA helicase, RecQ family [Haliangium ochraceum DSM
           14365]
 gi|262079106|gb|ACY15075.1| ATP-dependent DNA helicase, RecQ family [Haliangium ochraceum DSM
           14365]
          Length = 646

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 138/320 (43%), Gaps = 45/320 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G GK+L   +    A++  G  ++++P+  L +  Y+ +     +  I V  +   +  
Sbjct: 60  TGGGKSLCYQLP---ALKLSGVTLVISPLIALMKDQYDKL----DHLGIEVLRLDSTLSP 112

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQR-- 411
                ALER++ G+  I   T        F+  ++  ++ L +VDE H   ++G   R  
Sbjct: 113 REESAALERLSEGRPCIAYVTPERLGEPRFRKRLRGGRVGLFVVDEAHCISQWGHDFRPA 172

Query: 412 -LKLTQKATA---PHVLLMTATPIPR--TLVLTSLG-DIDISKITEKPAGRKPIKTVIIP 464
            L L +   A   P VL +TAT  PR  + +L  LG D D S I              + 
Sbjct: 173 YLGLGEAVKALGRPPVLALTATAPPRVKSDILAQLGMDEDASIID-------------VG 219

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--FRSVVERFNSLHEHFTSS---IA 519
           + R +      K   SE KK   +   IE ++     + + V   N+L +          
Sbjct: 220 LQRPNLNYHVFKA-HSEHKKRQHLLRLIERQQGCGIIYAATVRTVNALADFLIDQGIQCG 278

Query: 520 IIHGRMSDIDKESVMDSF-KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             HGRM   ++E V  +F ++ T +L++AT    +G+D  +   ++  N     L   +Q
Sbjct: 279 RYHGRMRTKEREDVQTAFMEHSTPRLMVATNAFGLGVDKQNIRFVVHYNFPG-SLESYYQ 337

Query: 579 LRGRVGRGEEISSCILLYHP 598
             GR GR    ++C+LLYHP
Sbjct: 338 EAGRAGRDGSPANCVLLYHP 357


>gi|323141155|ref|ZP_08076056.1| primosomal protein N' [Phascolarctobacterium sp. YIT 12067]
 gi|322414298|gb|EFY05116.1| primosomal protein N' [Phascolarctobacterium sp. YIT 12067]
          Length = 758

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 20/207 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q+ A   I Q +  +     +LQG  GSGKT V L A A AV+AG Q +++ P I +
Sbjct: 225 TAEQQDAAVKINQAIDAQRAQSFLLQGITGSGKTEVYLRAAAHAVDAGWQVLMLVPEIAL 284

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
            AQ     +K++       + +    + Q  R     R+  G+A ++IG   A+F     
Sbjct: 285 TAQ----LVKRFQAWFGSEIAVAHSKLSQNERGDVWYRMRTGKARVLIGVRSAVF---AP 337

Query: 392 YYKLILVIVDEQHR-----------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           + KL LVIVDE+H            +  +   +   + T   ++L +ATP   T      
Sbjct: 338 FEKLGLVIVDEEHEGSYKEEDHRPHYNARDVARTRCRLTGAALVLGSATPDLCTYYKALQ 397

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINR 467
           G+     +T +P G    K  I+ + +
Sbjct: 398 GECTHLHLTSRPNGAALPKVEIVDMRK 424


>gi|62289105|ref|YP_220898.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699043|ref|YP_413617.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189023379|ref|YP_001934147.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237814596|ref|ZP_04593594.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus str.
           2308 A]
 gi|254696549|ref|ZP_05158377.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254731464|ref|ZP_05190042.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|260546402|ref|ZP_05822142.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260759205|ref|ZP_05871553.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260760927|ref|ZP_05873270.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|62195237|gb|AAX73537.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615144|emb|CAJ10077.1| Lipocalin-related protein and Bos/Can/Equ allergen:ATP-dependent
           helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-termin [Brucella melitensis biovar Abortus 2308]
 gi|189018951|gb|ACD71673.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237789433|gb|EEP63643.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus str.
           2308 A]
 gi|260096509|gb|EEW80385.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260669523|gb|EEX56463.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260671359|gb|EEX58180.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
          Length = 626

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 42/330 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQARRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     +HI++GT    +D I        Q   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GSHIVVGTPGRLRDHITRNALDMSQLRAIVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD----IDISKITEKP 452
            DE    G ++ L+  L +       L+ +AT P P   +     +    I +   T + 
Sbjct: 157 ADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQH 216

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    +   + P  R   +I  L  +  + + +   C         + R  V+   S   
Sbjct: 217 ADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRLS 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 266 NRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
              LH+  GR GR     +C+L+   P S+
Sbjct: 326 DTLLHR-SGRTGRAGRKGTCVLVV--PFSR 352


>gi|254787485|ref|YP_003074914.1| primosomal protein N' [Teredinibacter turnerae T7901]
 gi|237686090|gb|ACR13354.1| primosomal protein N' [Teredinibacter turnerae T7901]
          Length = 739

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 11/151 (7%)

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           A ++LR  P + T+ QE+A    L  +S       +L+G  GSGKT   L A+A  ++AG
Sbjct: 197 ADQLLRESPLALTEEQEAA----LSQLSFHRYTCYLLEGATGSGKTEFYLQAIARTLQAG 252

Query: 322 GQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P IG+  Q     + ++ Q     V  +  N+  + R         G+A I+I
Sbjct: 253 KQALVLIPEIGLTPQT----VARFEQRFACSVAELHSNVSDSQRTNNWLAARDGRARIVI 308

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           GT       +Q   L ++IVDE+H    +Q+
Sbjct: 309 GTRLASLCPMQ--DLGIIIVDEEHDLSFKQQ 337


>gi|258543522|ref|YP_003188955.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634600|dbj|BAI00576.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637656|dbj|BAI03625.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640710|dbj|BAI06672.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643765|dbj|BAI09720.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646820|dbj|BAI12768.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649873|dbj|BAI15814.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652863|dbj|BAI18797.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655917|dbj|BAI21844.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 586

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 152/363 (41%), Gaps = 51/363 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------AVEAGGQ 323
           +PT  Q + + D       KNR L ++    GSGKT+   + +A          V +G  
Sbjct: 21  APTAVQAAVLAD-----DAKNRDL-LVSARTGSGKTVAFGLTLADLLLNDAGRCVPSGAP 74

Query: 324 -AVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++AP   LA Q   E    Y +    IV  + G  P    RK    +A G  HI++G
Sbjct: 75  IALVIAPTRELALQVRSELEWLYAETGARIVSCVGGMEP----RKEARALASG-CHIVVG 129

Query: 382 THALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D ++   L L     V++DE       G +  L+           L+ A P  R
Sbjct: 130 TPGRLCDHLRRGALDLSHLKAVVLDEADEMLDLGFRDELET----------LLDAMPKER 179

Query: 434 -TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            TL+ ++    DI+ +  +   +  ++   +  N     I    V+  +G  A  +   +
Sbjct: 180 RTLLFSATIARDIAALARR-YQQDALRIDTVGTNTPHADITYRAVLTEQGDMAGTVVNVL 238

Query: 493 EEKKES------NFRSVVERFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              + S      + R  V +  + L E   SS+AI  G +   ++   ++S ++G  ++ 
Sbjct: 239 RLMESSAAIVFCHTREAVRQLQAILTERGFSSVAI-SGDLGQNERSRAIESLRHGQARVC 297

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   GID+ D  ++I  +        LH+  GR GR  +  +C+LL  PP  +   
Sbjct: 298 VATDVAARGIDIPDLGLVIHASLPSNPATLLHR-SGRTGRAGKKGTCVLLV-PPARRRLA 355

Query: 606 TRL 608
            RL
Sbjct: 356 ERL 358


>gi|146283021|ref|YP_001173174.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri A1501]
 gi|145571226|gb|ABP80332.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri A1501]
          Length = 455

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 170/395 (43%), Gaps = 72/395 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ------AVI 326
           PT  Q +AI   L+      R LR+     GSGKT   ++ M   +    Q      A+I
Sbjct: 35  PTPVQVAAIPPALE-----GRDLRV-TAQTGSGKTAAFVLPMLNRLIGDAQPRVDVRALI 88

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + +++++Q T I   +ITG      +   L ++      ++IGT    
Sbjct: 89  LLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD----VLIGTPGRL 144

Query: 387 QDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRT 434
            + +    LIL     +++DE  R         +Q+ +   QK      LL +AT     
Sbjct: 145 IEHLNAGSLILKDVEILVIDEADRMLDMGFAEDMQRLVGECQKRQ--QTLLFSATS---- 198

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE--RLKVVLSEG-----KKAYW 487
                 G   + ++  K   R P+    + +NR+ E+ E  R +++ ++      K  +W
Sbjct: 199 ------GGAGLREMVAKVL-RDPLH---LQLNRVSELNESTRQQIITADDVAHKEKLVHW 248

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +      +K   F +   + + L+ H  +S   + ++HG     +++  ++  K G  K+
Sbjct: 249 LLANESYQKAVIFTNTRAQADRLYGHLVASDIKVFVLHGEKDQKERKLAIERLKQGGVKV 308

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKN 603
           L+AT V   G+D+    ++I  +    G   +H++ GR GR G E  +  L+ H     N
Sbjct: 309 LVATDVAARGLDIEGMDLVINFDMPRSGDEYVHRI-GRTGRAGAEGLAISLICH-----N 362

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIK 637
            +  +S +          E  LKQR E  ++ G+K
Sbjct: 363 DWNLMSSI----------ERYLKQRFEKRVIKGLK 387


>gi|75287517|sp|Q5VQL1|RH14_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 14
 gi|55296348|dbj|BAD68264.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
 gi|222617825|gb|EEE53957.1| hypothetical protein OsJ_00557 [Oryza sativa Japonica Group]
 gi|240065031|gb|ACS44654.1| ATP-dependent RNA helicase DB10 [Oryza sativa Japonica Group]
 gi|240065056|gb|ACS44655.1| ATP-dependent RNA helicase DB10 [Oryza sativa Indica Group]
          Length = 708

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 139/313 (44%), Gaps = 50/313 (15%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI        +      G   ++++P   LA Q  +  KK+ ++++I    
Sbjct: 226 TGSGKTLGYLIPGFILLKRLQHNSRDGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVC 285

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--- 406
           + G  P+  + + LER     A I++ T     D ++  ++ L     +++DE  R    
Sbjct: 286 LYGGAPKGPQLRDLER----GADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDM 341

Query: 407 GVQQRLKLTQKATAP--HVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
           G + +++   K   P    L+ TAT  P+ +      +L++   ++I   T++    K I
Sbjct: 342 GFEPQIRKIVKQVQPKRQTLMFTAT-WPKEVRKIASDLLSNPVQVNIGN-TDQLVANKSI 399

Query: 459 K---TVIIP---INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
                VI P     R+D+++   +     G K    C        S  R   +   +L  
Sbjct: 400 TQYVDVITPPEKSRRLDQILRSQE----PGSKIIIFC--------STKRMCDQLARNLAR 447

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
            + +S   IHG  S  +++SV+  F++G C +L+AT V   G+D+ D  +++  +     
Sbjct: 448 QYGASA--IHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKDIRVVVNYDFPTGV 505

Query: 573 LAQLHQLRGRVGR 585
              +H++ GR GR
Sbjct: 506 EDYVHRI-GRTGR 517


>gi|74006738|ref|XP_861475.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 9 [Canis familiaris]
          Length = 663

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 95/445 (21%), Positives = 185/445 (41%), Gaps = 91/445 (20%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 413

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 414 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 466

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ- 575
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I     +F L   
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI-----NFDLPSD 521

Query: 576 ----LHQLRGRVGRGEEISSCILLY 596
               +H++ GR GR   +  C++ +
Sbjct: 522 IEEYVHRI-GRTGRVGNLGKCLVTF 545


>gi|115434786|ref|NP_001042151.1| Os01g0172200 [Oryza sativa Japonica Group]
 gi|55296347|dbj|BAD68263.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
 gi|113531682|dbj|BAF04065.1| Os01g0172200 [Oryza sativa Japonica Group]
 gi|215713416|dbj|BAG94553.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 759

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 139/313 (44%), Gaps = 50/313 (15%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI        +      G   ++++P   LA Q  +  KK+ ++++I    
Sbjct: 277 TGSGKTLGYLIPGFILLKRLQHNSRDGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVC 336

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--- 406
           + G  P+  + + LER     A I++ T     D ++  ++ L     +++DE  R    
Sbjct: 337 LYGGAPKGPQLRDLER----GADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDM 392

Query: 407 GVQQRLKLTQKATAP--HVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
           G + +++   K   P    L+ TAT  P+ +      +L++   ++I   T++    K I
Sbjct: 393 GFEPQIRKIVKQVQPKRQTLMFTAT-WPKEVRKIASDLLSNPVQVNIGN-TDQLVANKSI 450

Query: 459 K---TVIIP---INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
                VI P     R+D+++   +     G K    C        S  R   +   +L  
Sbjct: 451 TQYVDVITPPEKSRRLDQILRSQE----PGSKIIIFC--------STKRMCDQLARNLAR 498

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
            + +S   IHG  S  +++SV+  F++G C +L+AT V   G+D+ D  +++  +     
Sbjct: 499 QYGASA--IHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKDIRVVVNYDFPTGV 556

Query: 573 LAQLHQLRGRVGR 585
              +H++ GR GR
Sbjct: 557 EDYVHRI-GRTGR 568


>gi|218187595|gb|EEC70022.1| hypothetical protein OsI_00586 [Oryza sativa Indica Group]
          Length = 754

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 139/313 (44%), Gaps = 50/313 (15%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI        +      G   ++++P   LA Q  +  KK+ ++++I    
Sbjct: 273 TGSGKTLGYLIPGFILLKRLQHNSRDGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVC 332

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--- 406
           + G  P+  + + LER     A I++ T     D ++  ++ L     +++DE  R    
Sbjct: 333 LYGGAPKGPQLRDLER----GADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDM 388

Query: 407 GVQQRLKLTQKATAP--HVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
           G + +++   K   P    L+ TAT  P+ +      +L++   ++I   T++    K I
Sbjct: 389 GFEPQIRKIVKQVQPKRQTLMFTAT-WPKEVRKIASDLLSNPVQVNIGN-TDQLVANKSI 446

Query: 459 K---TVIIP---INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
                VI P     R+D+++   +     G K    C        S  R   +   +L  
Sbjct: 447 TQYVDVITPPEKSRRLDQILRSQE----PGSKIIIFC--------STKRMCDQLARNLAR 494

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
            + +S   IHG  S  +++SV+  F++G C +L+AT V   G+D+ D  +++  +     
Sbjct: 495 QYGASA--IHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKDIRVVVNYDFPTGV 552

Query: 573 LAQLHQLRGRVGR 585
              +H++ GR GR
Sbjct: 553 EDYVHRI-GRTGR 564


>gi|254428566|ref|ZP_05042273.1| primosomal protein N', putative [Alcanivorax sp. DG881]
 gi|196194735|gb|EDX89694.1| primosomal protein N', putative [Alcanivorax sp. DG881]
          Length = 724

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 101/224 (45%), Gaps = 26/224 (11%)

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           I ++   ++A++ L   P +    Q +AI+ I QD       L  L G  GSGKT V L 
Sbjct: 178 IQVDTRPEVARETLAQAPLAANAEQRAAIQAI-QDADGFTPFL--LDGITGSGKTEVYLQ 234

Query: 313 AMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           AMA  + AG Q +++ P IG+  Q     ++++ Q   + V  +   +    R       
Sbjct: 235 AMAPLLAAGKQVMVLVPEIGLTPQT----VQRFKQRFAVPVVTLHSGLTDRERLDNWLAA 290

Query: 372 AHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-----------TQKAT 419
             GQA IIIGT  A+F   +      L+IVDE H   ++Q+               Q+  
Sbjct: 291 REGQARIIIGTRSAIFTPMLNP---ALIIVDEAHDSSLKQQDGFRYHARDLATWRAQQLD 347

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPA--GRKPIKTV 461
            P V+L +ATP   TL L   G     K++++     R PI+ V
Sbjct: 348 IP-VILGSATPALETLHLAREGRFQWLKLSQRATDQSRPPIEIV 390


>gi|163868127|ref|YP_001609331.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
 gi|161017778|emb|CAK01336.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
          Length = 467

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 145/348 (41%), Gaps = 47/348 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q   I  +LQ    +  +L I Q   G+GKT   ++ M   +E G       + +I
Sbjct: 29  PTPIQSETIPHVLQ----RKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTLI 82

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   +A Q  E   KY  N ++ V ++ G +   H+ + LER     A ++I T    
Sbjct: 83  LEPTREIAAQVEENFDKYGINHRLNVALLIGGVSFEHQDRKLER----GADVLIATPGRL 138

Query: 387 QDSIQYYKLILV-----IVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRT 434
            D  +  KL+L+     ++DE  R         +++  KLT        L  +AT  P  
Sbjct: 139 LDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLT--PFTRQTLFFSATMAPEI 196

Query: 435 LVLT-----SLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             LT     S   ++++K   T     ++ +K+     ++   + E ++   S+ + A  
Sbjct: 197 TKLTKQFLHSPVSVEVTKASSTATTVTQRLVKSGNKSWDKRAVLRELIQNEGSKLQNAII 256

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C        +  R + E F SL +H   ++  +HG M    + + +  FKN    LL+A
Sbjct: 257 FC--------NRKRDISELFRSLIKH-NFNVGALHGDMDQYSRMNTLADFKNNKLTLLVA 307

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           + V   G+D+   S +   +        +H++ GR GR   +     +
Sbjct: 308 SDVAARGLDIPAVSHVFNYDVPTHAEDYIHRI-GRTGRANRLGKAFTI 354


>gi|330886294|gb|EGH20195.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. mori str.
           301020]
          Length = 459

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 187/428 (43%), Gaps = 57/428 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  ++   I V
Sbjct: 45  IAQAKTGSGKTAAFGIGLLNPINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 105 LTLCGGVSFGPQIGSLE---HG-AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRM- 159

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++   + I +++ K   R P +TV +   
Sbjct: 160 ------LDMGFYDAIADIIKQTPQRRQTLLFSATYPVGIKQLSSKFM-RDP-QTVKVEAL 211

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAI 520
             D  IE++   +S  ++   +   +   + ++   F    ++   + +H T+   S   
Sbjct: 212 HADSQIEQIFYEISPEQRLEAVVKVLGHFRPASCVAFCFTKQQVQEVVDHLTAKGMSAVG 271

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++ V+  F N +  +L+AT V   G+D +DA  ++I N E    +++H  R
Sbjct: 272 LHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVI-NVELARDSEIHIHR 329

Query: 581 -GRVGRGEEISSCILLYHP---------------PLSKNSYTRLSV-----LKNTEDGFL 619
            GR GR  E    + L  P               PL+   Y +LS+     L  T     
Sbjct: 330 VGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQQYDQLSIKEGGKLLPTMTTLC 389

Query: 620 IAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAKHILTQDPDLTS 675
           I      + + G+ILG    ++G+    + +  + D  + + + R  AK  L +  +   
Sbjct: 390 IGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALERLNN-GK 448

Query: 676 VRGQSIRI 683
           ++G+S+R+
Sbjct: 449 IKGKSLRV 456


>gi|145500870|ref|XP_001436418.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403557|emb|CAK69021.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 153/362 (42%), Gaps = 72/362 (19%)

Query: 261 IAQKILRNIPFS-----PTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIA 313
           +++ +LR I FS     P+  Q+ AIK I+  +D+        + Q   G+GKT    I 
Sbjct: 24  LSKDLLRGI-FSYGFERPSAIQQKAIKPIILGKDV--------LAQAQSGTGKTGTFTIG 74

Query: 314 MAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
               ++      Q +I+AP+  LA+Q Y+ +K   Q   I      G       R   E+
Sbjct: 75  ALQRIDPNQRKTQVIILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTSTQETR---EK 131

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
              G  HIII T     D ++   L      L++VDE  +        L Q  +     +
Sbjct: 132 CKQG-VHIIIATPGRLIDMMKNKYLDATFMRLLVVDEADQM-------LDQGFSDNFAEI 183

Query: 426 MTATPIPRTLVLTSLGDIDISKITEK-PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +   P          GDI I+  +   P     +    +       ++++ ++ L EG +
Sbjct: 184 LKMVP----------GDIQIALFSATFPQEIIELSKQFLREGTAKILVKKEQLTL-EGIR 232

Query: 485 AYWICPQIEEKKESNFRSVVERF------------------NSLHEHFTS---SIAIIHG 523
            ++I  Q E++K   FR +VE +                  + LH+  T+   +++ IH 
Sbjct: 233 QFYIAIQQEDQK---FRVLVELYKNLTVSQSILFCNSKKTVDDLHDKLTAEGFTVSKIHS 289

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M   ++E VM  FK G  ++L++T ++  GIDV   S++I           +H++ GR 
Sbjct: 290 QMEQKEREQVMQEFKKGAARILVSTDLMGRGIDVQQLSLVINYEFPRLKEQYIHRV-GRA 348

Query: 584 GR 585
           GR
Sbjct: 349 GR 350


>gi|329113602|ref|ZP_08242382.1| Cold-shock DEAD box protein A-like protein [Acetobacter pomorum
           DM001]
 gi|326697124|gb|EGE48785.1| Cold-shock DEAD box protein A-like protein [Acetobacter pomorum
           DM001]
          Length = 584

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 152/363 (41%), Gaps = 51/363 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------AVEAGGQ 323
           +PT  Q + + D       KNR L ++    GSGKT+   + +A          V +G  
Sbjct: 21  APTAVQAAVLAD-----DAKNRDL-LVSARTGSGKTVAFGLTLADLLLNDAGRCVPSGAP 74

Query: 324 -AVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++AP   LA Q   E    Y +    IV  + G  P    RK    +A G  HI++G
Sbjct: 75  IALVIAPTRELALQVRSELEWLYAETGARIVSCVGGMEP----RKEARALASG-CHIVVG 129

Query: 382 THALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D ++   L L     V++DE       G +  L+           L+ A P  R
Sbjct: 130 TPGRLCDHLRRGALDLSHLKAVVLDEADEMLDLGFRDELET----------LLDAMPKER 179

Query: 434 -TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            TL+ ++    DI+ +  +   +  ++   +  N     I    V+  +G  A  +   +
Sbjct: 180 RTLLFSATIARDIAALARR-YQQDALRIDTVGTNTPHADITYRAVLTEQGDMAGTVVNVL 238

Query: 493 EEKKES------NFRSVVERFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              + S      + R  V +  + L E   SS+AI  G +   ++   ++S ++G  ++ 
Sbjct: 239 RLMESSAAIVFCHTREAVRQLQAILTERGFSSVAI-SGDLGQNERSRAIESLRHGQARVC 297

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   GID+ D  ++I  +        LH+  GR GR  +  +C+LL  PP  +   
Sbjct: 298 VATDVAARGIDIPDLGLVIHASLPSNPATLLHR-SGRTGRAGKKGTCVLLV-PPARRRLA 355

Query: 606 TRL 608
            RL
Sbjct: 356 ERL 358


>gi|145502420|ref|XP_001437188.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404337|emb|CAK69791.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 153/362 (42%), Gaps = 72/362 (19%)

Query: 261 IAQKILRNIPFS-----PTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIA 313
           +++ +LR I FS     P+  Q+ AIK I+  +D+        + Q   G+GKT    I 
Sbjct: 24  LSKDLLRGI-FSYGFERPSAIQQKAIKPIILGKDV--------LAQAQSGTGKTGTFTIG 74

Query: 314 MAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
               ++      Q +I+AP+  LA+Q Y+ +K   Q   I      G       R   E+
Sbjct: 75  ALQRIDPNQRKTQVIILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTSTQETR---EK 131

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
              G  HIII T     D ++   L      L++VDE  +        L Q  +     +
Sbjct: 132 CKQG-VHIIIATPGRLIDMMKNKYLDATFMRLLVVDEADQM-------LDQGFSDNFAEI 183

Query: 426 MTATPIPRTLVLTSLGDIDISKITEK-PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +   P          GDI I+  +   P     +    +       ++++ ++ L EG +
Sbjct: 184 LKMVP----------GDIQIALFSATFPQEIIELSKQFLREGTAKILVKKEQLTL-EGIR 232

Query: 485 AYWICPQIEEKKESNFRSVVERF------------------NSLHEHFTS---SIAIIHG 523
            ++I  Q E++K   FR +VE +                  + LH+  T+   +++ IH 
Sbjct: 233 QFYIAIQQEDQK---FRVLVELYKNLTVSQSILFCNSKKTVDDLHDKLTAEGFTVSKIHS 289

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M   ++E VM  FK G  ++L++T ++  GIDV   S++I           +H++ GR 
Sbjct: 290 QMEQKEREQVMQEFKKGAARILVSTDLMGRGIDVQQLSLVINYEFPRLKEQYIHRV-GRA 348

Query: 584 GR 585
           GR
Sbjct: 349 GR 350


>gi|217978721|ref|YP_002362868.1| primosome assembly protein PriA [Methylocella silvestris BL2]
 gi|217504097|gb|ACK51506.1| primosomal protein N' [Methylocella silvestris BL2]
          Length = 744

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 126/304 (41%), Gaps = 60/304 (19%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
           +PARER     L A Q   L+ +    K  G+  +V +G I Q +      +P  +    
Sbjct: 130 TPARER----TLAAAQAGGLMTKAALAKAAGVSASVIDGLIRQGVFTLETLAPEPAAPVG 185

Query: 281 IKDILQDMSQKNRM----------------LRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
             D  Q +  +++                 + +L+G  GSGKT     A+AAA+ AG Q 
Sbjct: 186 DPDFRQPLLSQDQAAAAAELAKAVLAQSFSVTLLEGVTGSGKTETYFEAIAAALRAGRQT 245

Query: 325 VIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   L  Q   F+ ++        VE  +G +  A R +    +A G+A IIIG  
Sbjct: 246 LVLLPEIALTSQ---FVDRFGARFGAAPVEWHSG-IGAARRARIWSAVASGEAKIIIGAR 301

Query: 384 -ALFQDSIQYYKLILVIVDEQHRFGVQQ--------------RLKLTQKATAPHVLLMTA 428
            ALF   + +  L LVIVDE+H    +Q              R ++ Q A    V+L +A
Sbjct: 302 SALF---LPFQSLGLVIVDEEHDGAYKQEDGVVYHARDMAVVRGRIEQCA----VILASA 354

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TP   T V    G      + ++  GR         + +I+ V  RLK       +  WI
Sbjct: 355 TPSIETRVNADQGRYRRLVLKDRFGGRA--------MPKIEAVDMRLK----PPPRGKWI 402

Query: 489 CPQI 492
            P +
Sbjct: 403 SPAL 406


>gi|229541656|ref|ZP_04430716.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
 gi|229326076|gb|EEN91751.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
          Length = 376

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 161/359 (44%), Gaps = 50/359 (13%)

Query: 263 QKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           Q+  +N  F  P   QE  I  +L           I     GSGKTL  L+ +   ++ G
Sbjct: 14  QQAWKNSTFEHPASVQEKVIPAVLDGRDV------IAAAPTGSGKTLAYLLPVLDRMDPG 67

Query: 322 GQ---AVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAH 377
            Q   AVI+AP   L  Q  E   K++Q + I  + +I G    A+ ++ +E++     H
Sbjct: 68  KQTVQAVILAPSKELVMQIQEEAGKWSQGSGIRSIPLIGG----ANVKRQIEKLKK-HPH 122

Query: 378 IIIGTHA-----LFQDSIQYYKLILVIVDE-------QHRFGVQQRLKLTQKATAPHVLL 425
           ++IGT       + Q  ++ +++ ++++DE       ++   V Q +K   +     +LL
Sbjct: 123 LVIGTPGRILELIHQKKLKMHEVKMMVLDEGDQLLGKEYSRTVGQIVKSAMRDC--QLLL 180

Query: 426 MTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            +AT +P      ++  +    + +I ++ A R P++ + I  +   + IE+L+ +   G
Sbjct: 181 FSAT-LPDAAAHKAMEQMKEPLLIRIAKEEA-RSPVEHIYIVSSDPRDKIEQLRKIARMG 238

Query: 483 KKAYWICPQIEEKKESNFRSVVE--RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +            + +    VE  RF  L      +IA +HG M   ++E  +  F+NG
Sbjct: 239 VRGLVFF-----NNKWDVSVAVEKLRFKGL------AIAELHGDMRKEEREKSIRLFQNG 287

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHP 598
              LL+AT V   G+D+   + +I  +    G A +H+  GR GR G    + + L  P
Sbjct: 288 DVPLLLATDVAARGLDIPAITHVIQFDLPEDGSAYVHR-SGRTGRLGSNPGTVVSLVTP 345


>gi|70989821|ref|XP_749760.1| ATP-dependent RNA helicase [Aspergillus fumigatus Af293]
 gi|74668891|sp|Q4WH83|DBP3_ASPFU RecName: Full=ATP-dependent RNA helicase dbp3
 gi|66847391|gb|EAL87722.1| ATP-dependent RNA helicase, putative [Aspergillus fumigatus Af293]
 gi|159129169|gb|EDP54283.1| ATP-dependent RNA helicase, putative [Aspergillus fumigatus A1163]
          Length = 503

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 155/368 (42%), Gaps = 51/368 (13%)

Query: 300 GDVGSGKTLV-ALIAMAAAVEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            + GSGKTL   L  +   +++G          AVI++P   LA Q Y+ + K+  +  I
Sbjct: 129 AETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPTRELAMQIYDQLSKFGASVDI 188

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR 405
            V  I G + +  +R+AL+      A I++ T    +D     S+   K+  +++DE  R
Sbjct: 189 RVTCIYGGVKKDEQREALK-----TAAIVVATPGRLKDLKDDGSVDLGKVKYLVLDEADR 243

Query: 406 F---GVQQRLKLTQKATAP---HVLLMTAT--PIPRTLV---LTSLGDIDIS-KITEKPA 453
               G +Q +K   ++T       ++ TAT  P  R L    +TS   + I    +  P 
Sbjct: 244 MLDKGFEQDIKDIIRSTPDSTRQTVMFTATWPPSVRDLAASFMTSAVTVTIGGDPSADPR 303

Query: 454 GRKPIKTVIIPIN------RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
               IK V+  +       R+ +++ R +   + G K    C          ++    R 
Sbjct: 304 ANTRIKQVVEVVKPQEKEARLVQLLSRSQRGAAVGDKVLVFC---------LYKKEAVRV 354

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L       +A IHG ++  ++   +++FK G+  +L+AT V   G+D+    ++I   
Sbjct: 355 ERLLRSKNFKVAGIHGDLNQHERFKSLEAFKTGSATVLVATDVAARGLDIPSVKLVINVT 414

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK----NTEDGFLIAEE 623
                   +H++ GR GR       I L+       S   ++VL+    +  D  L    
Sbjct: 415 FPLTVEDYVHRI-GRTGRAGADGHAITLFTEADKAQSGALINVLRAAKQDVPDALLKFGT 473

Query: 624 DLKQRKEG 631
            +K+++ G
Sbjct: 474 TVKKKQHG 481


>gi|300121126|emb|CBK21507.2| unnamed protein product [Blastocystis hominis]
          Length = 518

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 125/277 (45%), Gaps = 29/277 (10%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I++P   LA Q Y+  +++   T I   ++ G  P    R+ L+ +  G   I++GT 
Sbjct: 220 CLILSPTRELALQIYQESQRFCYCTGIASAVVYGGTPM---REVLDSLRSG-CDILVGTP 275

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVL 437
              +D IQ   L L     +++DE  R      L +  +     ++  +  P  R TL+ 
Sbjct: 276 GRVKDMIQRGILGLEGITHLVLDEADRM-----LDMGFEPQIRDIVEQSGMPRNRQTLMF 330

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRID---EVIERLKVVLSEGKKAYWICPQIEE 494
           ++    +I ++    AG   I  V + + R+    + IE+  + + +  K  ++  ++E 
Sbjct: 331 SATFPDEIQRL----AGDFLIDYVFLAVGRVGGAAQDIEQRVIYVEDADKDSYLLHELEN 386

Query: 495 KKESNFRSVVE---RFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    VE   + + L  + T+     A IHG  S  D+E  + +FK    ++L+AT
Sbjct: 387 WGNGRILIFVETKRKADILQRYLTTQHFQAASIHGDRSQADREDALSAFKLNRVQILVAT 446

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            V   G+D+ D S++I  +        +H++ GR GR
Sbjct: 447 DVAARGLDIPDVSLVINYDTPQNIEDYVHRI-GRTGR 482


>gi|17536103|ref|NP_495891.1| DEAD boX helicase homolog family member (ddx-19) [Caenorhabditis
           elegans]
 gi|3879545|emb|CAA90408.1| C. elegans protein T07D4.4a, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1022

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 139/325 (42%), Gaps = 61/325 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT+ QE+A+  +L +         I Q   G+GKT   ++ M   ++      Q + +AP
Sbjct: 641 PTRIQETALPLLLMEPPSN----LIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAP 696

Query: 330 IGILAQQHYEFIKK---YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA+Q  E ++K   +  N +I   I  GNM     RK  E+I       +IGT  + 
Sbjct: 697 TLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTEQI-------VIGTPGIT 749

Query: 387 QDSIQYYKLI------LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           +D +Q YK I       +++DE       Q    T  +T  + ++  A+   ++++ ++ 
Sbjct: 750 RDYLQKYKCIDPSKIRCLVLDEADVMIYHQ--GFTDISTTIYNMVEDASDSVQSMLFSAT 807

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D  +     K           I  N I  +++R +  L   K+ Y  C      ++S +
Sbjct: 808 YDEPVINFATK-----------IIKNAIVVMLKREEQALPNIKQFYVQC----ACRDSKY 852

Query: 501 RSVVERFNSL------------------HEHFTS---SIAIIHGRMSDIDKESVMDSFKN 539
            ++V  ++ L                  +E+  +    + ++HG M+ +++   +  FK 
Sbjct: 853 AAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKR 912

Query: 540 GTCKLLIATTVIEVGIDVVDASIII 564
           G  K+LI T V   GIDV   S++I
Sbjct: 913 GDFKVLITTNVFARGIDVAQVSVVI 937


>gi|257066575|ref|YP_003152831.1| DEAD/DEAH box helicase domain-containing protein [Anaerococcus
           prevotii DSM 20548]
 gi|256798455|gb|ACV29110.1| DEAD/DEAH box helicase domain protein [Anaerococcus prevotii DSM
           20548]
          Length = 536

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 150/350 (42%), Gaps = 47/350 (13%)

Query: 258 EGKIAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           E  I  +ILR I       P+  QE +I  +L+     N +  I +   GSGKT    I 
Sbjct: 5   ELNIGNEILRAIDDLGYEKPSPIQEESIPHLLE----GNDL--IGKSQTGSGKTAAFAIP 58

Query: 314 MAAAVEAGG--QAVIMAPIGILAQQHYEFIKK-YTQNTQIIVEIITGNMPQAHRRKALER 370
           +   +EA G  QA+I+ P   L  Q  + I+K Y    +I +  + G    +H  + ++ 
Sbjct: 59  IIENIEANGITQALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGG---SHIVRQIKS 115

Query: 371 IAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
           +  G   I++GT     D +        Q   ++L   DE    G +  +K     T P+
Sbjct: 116 LKKG-VEIVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNPN 174

Query: 423 --VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
                 +AT  P           + SK+ +       IK+  + ++RID+   +LK  + 
Sbjct: 175 RQTCFFSATMGPEIQ--------EFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKLKESMK 226

Query: 481 EGKKAYWICPQIEEKKES-NFRSVVERFNSLHEHFTSSIAII---HGRMSDIDKESVMDS 536
           E  +A     +I +   +  F +   + + L E  T    ++   HG +    ++ VM  
Sbjct: 227 E--EALMRLLEIHKANLAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKK 284

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGR 585
           F+N T ++L+AT +   G+DV D  I+      ++ L QL +    R+GR
Sbjct: 285 FRNKTIQILVATDIAARGLDVDDVDIVF-----NYDLPQLDEYYVHRIGR 329


>gi|289624121|ref|ZP_06457075.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647605|ref|ZP_06478948.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|320321939|gb|EFW78035.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320330955|gb|EFW86929.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330865833|gb|EGH00542.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330872189|gb|EGH06338.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 459

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 187/428 (43%), Gaps = 57/428 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  ++   I V
Sbjct: 45  IAQAKTGSGKTAAFGIGLLNPINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 105 LTLCGGVSFGPQIGSLE---HG-AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRM- 159

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++   + I +++ K   R P +TV +   
Sbjct: 160 ------LDMGFYDAIADIIEQTPQRRQTLLFSATYPVGIKQLSSKFM-RDP-QTVKVEAL 211

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAI 520
             D  IE++   +S  ++   +   +   + ++   F    ++   + +H T+   S   
Sbjct: 212 HADSQIEQIFYEISPEQRLEAVVKVLGHFRPASCVAFCFTKQQVQEVVDHLTAKGMSAVG 271

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++ V+  F N +  +L+AT V   G+D +DA  ++I N E    +++H  R
Sbjct: 272 LHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVI-NVELARDSEIHIHR 329

Query: 581 -GRVGRGEEISSCILLYHP---------------PLSKNSYTRLSV-----LKNTEDGFL 619
            GR GR  E    + L  P               PL+   Y +LS+     L  T     
Sbjct: 330 VGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQQYDQLSIKEGGKLLPTMTTLC 389

Query: 620 IAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAKHILTQDPDLTS 675
           I      + + G+ILG    ++G+    + +  + D  + + + R  AK  L +  +   
Sbjct: 390 IGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALERLNN-GK 448

Query: 676 VRGQSIRI 683
           ++G+S+R+
Sbjct: 449 IKGKSLRV 456


>gi|258538949|ref|YP_003173448.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|257150625|emb|CAR89597.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
          Length = 448

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 134/318 (42%), Gaps = 32/318 (10%)

Query: 299 QGDVGSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-VEI 354
           Q   GSGKT   LV L+++    E   Q VI AP   LA Q Y   ++ TQ    I +  
Sbjct: 46  QSQTGSGKTHAFLVPLLSLVDPNEDATQVVITAPSRELANQIYAVAQQLTQTEPAIRISR 105

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           + G M    ++K ++++   Q H+ IGT     D I+ Y L+   V    R  V     +
Sbjct: 106 LVGGM---DKQKQIDKLQAHQPHVAIGTPGRILDMIKRYDLVPASV----RHFVVDEADM 158

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDE 470
           T        +   A+  P  L +         K+  +P  RK    P    + P + I +
Sbjct: 159 TLDMGFLETVDAIASSFPEHLQMAVFSATIPQKL--EPFLRKYMDHPTVIELKPQSVIAD 216

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHG 523
            +E + ++ ++G+    +  Q+            +N ++ V+  +   +H    +A IHG
Sbjct: 217 TVENI-LIAAKGRDKNELIYQLVTMGHPFLVLIFANTKTSVDAIHDYLKHQGLKVAKIHG 275

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII---IENAEHFGLAQLHQLR 580
            +   ++  +M    +   + ++AT +   GID+   S++I   I   + F + ++    
Sbjct: 276 GVQPRERRRIMKEVADLKYQYVVATDLAARGIDIKGVSMVINAEIPRDQEFFIHRV---- 331

Query: 581 GRVGRGEEISSCILLYHP 598
           GR GR     + I LY P
Sbjct: 332 GRTGRNGLPGTAITLYEP 349


>gi|74006744|ref|XP_861568.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 12 [Canis familiaris]
          Length = 653

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 169/399 (42%), Gaps = 71/399 (17%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
            + + + G             ++++AP   LA Q YE  +K++  +++   ++ G     
Sbjct: 239 LSQIYSDGPGEALRAMKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIG 298

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-----FGVQQRL 412
            + + LER      H+++ T     D ++  K+ L     +++DE  R     F  Q R 
Sbjct: 299 QQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRR 354

Query: 413 KLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPI 465
            + Q    P    H ++ +AT  P+ + + +   +D      +    +  + I   ++ +
Sbjct: 355 IVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWV 413

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
              D+    L ++ + GK +  +   +E KK ++    +E F   HE +  +   IHG  
Sbjct: 414 EESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY--ACTSIHGDR 466

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 467 SQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 505


>gi|332159549|ref|YP_004424828.1| ATP-dependent helicase [Pyrococcus sp. NA2]
 gi|331035012|gb|AEC52824.1| ATP-dependent helicase [Pyrococcus sp. NA2]
          Length = 913

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 145/337 (43%), Gaps = 40/337 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI----MAP 329
            K Q  A K I++D   +N  L I     GSGKT  A++ +  A+     + I    +AP
Sbjct: 17  NKLQIEAFKRIVRD---RNSTLII--APTGSGKTEAAILPVLNAILEENLSPITCLYIAP 71

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HA 384
           I  L +   + +K + + T I +E+  G+ PQ+ R K +        H++I T       
Sbjct: 72  IKALNRDLLDRLKWWEEKTGIRIEVRHGDTPQSKRSKQV----RSPPHVLITTPETLPAI 127

Query: 385 LFQDSIQYY--KLILVIVDE-----QHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLV 436
           L   S++ Y   +  VIVDE      ++ G Q  L L + +  A  + +  +  +     
Sbjct: 128 LTTKSLRPYLKNVKFVIVDEITELVDNKRGAQLILNLKRLSLIADFIRIGLSATVGNEEE 187

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVII---PINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +    D D+     KP  +K  K  ++   P  +  E+ E+L V L    +   +   +E
Sbjct: 188 IRRWLDADV---VIKPTLKKRYKFKVLFPQPDEKDREIAEKLNVPLEVATRLRVLWNIVE 244

Query: 494 EKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           E K +    N R   E      + +   + + HG +S   +       K G  K LI T+
Sbjct: 245 EYKRALIFVNTRQFAEILGHRLKAWGKPVEVHHGSLSKEARIEAERKLKEGKIKALICTS 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            +E+GID+ D  ++I    ++    Q+++L  R GR 
Sbjct: 305 SMELGIDIGDIDVVI----QYMSPRQVNRLIQRAGRS 337


>gi|262374058|ref|ZP_06067335.1| primosomal protein N [Acinetobacter junii SH205]
 gi|262311069|gb|EEY92156.1| primosomal protein N [Acinetobacter junii SH205]
          Length = 741

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +P + Q+ AI+ IL+  +Q+     +L G  GSGKT V L  M   ++ G Q +
Sbjct: 201 LAQMPLTPNEDQKRAIQQILK--AQQRYQAFLLDGLTGSGKTEVYLQVMHEVLKQGKQVL 258

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q     + ++       V ++   +  + R +A +    G+A IIIGT +
Sbjct: 259 VLVPEIGLTPQT----VARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIIIGTRS 314

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                + +  L L+I+DE+H    +Q+
Sbjct: 315 AIYTPLPH--LGLIILDEEHDLSYKQQ 339


>gi|255712573|ref|XP_002552569.1| KLTH0C07964p [Lachancea thermotolerans]
 gi|238933948|emb|CAR22131.1| KLTH0C07964p [Lachancea thermotolerans]
          Length = 398

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 137/311 (44%), Gaps = 39/311 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I M   ++      Q+++++P   LA+Q  + +        I   
Sbjct: 64  IAQAQSGTGKTATFTIGMLQVIDFKSRELQSLVLSPTRELAKQISQVVGNLGDYMNISAH 123

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGV 408
             TG        K   ++ HG  H++ GT     D I+        L ++I+DE     +
Sbjct: 124 ACTGGKAMQTDTK---KLTHG-CHVVSGTPGRVLDMIKRRILNTRHLKMLILDEADEL-L 178

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            + L   Q+       L  +  +   +V+++    DI +IT+K     P+K   I + R 
Sbjct: 179 SETLGFKQQIYDIFAKLPKSVQV---VVVSATMSKDILEITKKFMS-DPVK---ILVKRD 231

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEHFTSSI 518
           +  +E +K       +  W    + +  +S          N + VV+  +S       ++
Sbjct: 232 EISLEGIKQYHVNVDREEWKFDTLCDLYDSLTITQCVIFCNTKKVVDWLSSKLLQANFAV 291

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLA 574
           A +HG M   D++ VM+ F++GT ++LI+T V   GIDV   S++I     +N E++   
Sbjct: 292 ASMHGDMKQEDRDRVMNDFRSGTSRVLISTDVWARGIDVQQVSLVINYDLPDNLENY--- 348

Query: 575 QLHQLRGRVGR 585
            +H++ GR GR
Sbjct: 349 -IHRI-GRSGR 357


>gi|225011211|ref|ZP_03701670.1| transcription factor CarD [Flavobacteria bacterium MS024-3C]
 gi|225004625|gb|EEG42588.1| transcription factor CarD [Flavobacteria bacterium MS024-3C]
          Length = 681

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 41/68 (60%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q +A +DI +DM  +  M R++ GDVG GKT VA+ A   AV+ G Q  I+ P 
Sbjct: 559 YEDTPDQLTATEDIKKDMESERPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAILVPT 618

Query: 331 GILAQQHY 338
            ILA QH+
Sbjct: 619 TILAYQHF 626


>gi|332186811|ref|ZP_08388553.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
 gi|332013144|gb|EGI55207.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
          Length = 580

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 148/350 (42%), Gaps = 50/350 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q + I+D  Q      R L I+    GSGKT+   +AMA+ +  G          
Sbjct: 21  APTPVQAAVIEDDAQ-----GRDL-IVSAQTGSGKTVAFGLAMASELLQGADHLPPAGAP 74

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    ++      +  +    G M  +  R+AL    HG AHI++GT
Sbjct: 75  MALVIAPTRELALQVSRELEWLYAGARARIATCVGGMDASRERRALN---HG-AHIVVGT 130

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIP 432
               +D ++   L L     V++DE       G ++ L+  L    T    LL +AT +P
Sbjct: 131 PGRLRDHLERGALDLSSLKFVVLDEADEMLDMGFREDLEQILDATPTERRTLLFSAT-MP 189

Query: 433 RTLVLTS----LGDIDISKITEKPAGRKPIKTVIIPINRID---EVIERLKVVLSEGKKA 485
           R +V  +         I  I+E   G   I   ++ +   D    V+  L+  L E + A
Sbjct: 190 RPIVQLAKRYQTNAKRIETISED-KGHADIAYQVVTVAPADIEAAVVNLLR--LHEAEVA 246

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              C         N R +     SL E   S++A+  G  S  ++   + + ++G  ++ 
Sbjct: 247 ILFC-----ATRDNVRHL---HASLVERGFSAVAL-SGEHSQNERNHALQALRDGRARVC 297

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +AT V   GID+   +++I         A  H+  GR GR     + IL+
Sbjct: 298 VATDVAARGIDLPGLTLVIHVEIPRDAEALQHR-SGRTGRAGRKGTAILI 346


>gi|307104451|gb|EFN52705.1| hypothetical protein CHLNCDRAFT_36787 [Chlorella variabilis]
          Length = 689

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 142/331 (42%), Gaps = 54/331 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG------QAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           I +   GSGKTL   I +   + AG       Q +++AP   LA+Q    I   T     
Sbjct: 192 IARAKTGSGKTLAFAIPIIEKIMAGPRNLRKPQCLVLAPTRELAKQVEREIAA-TAPGLG 250

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR 405
                 GN P   + K L R       I++GT       + QD++    +  V++DE  +
Sbjct: 251 CGCYYGGN-PIGPQLKELRR----GVDIVVGTPGRIIDLIDQDALDLSMVRFVVLDEADQ 305

Query: 406 F---GVQQRLK--LTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAG 454
               G ++ ++  L         +L +AT +PR +       L +  +ID+  + E   G
Sbjct: 306 MLNVGFEKDVETILENVPQERQTMLFSAT-LPRWVKKLVKQYLNNPENIDL--VGEGNTG 362

Query: 455 RKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           + P  I  + +P +    V+  L  V  EG KA       + K+E++     E   S+  
Sbjct: 363 QDPDSITALAVPADARRSVLVDLLTVYGEGGKAIVFT---QTKREAD-----EVAASVGG 414

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           H       +HG MS  ++E V+ SF+     +L+AT V   G+D+ D  +++     H+ 
Sbjct: 415 HL--PCGALHGDMSQREREKVLASFRANKLMVLVATDVAARGLDIPDVDVVV-----HYE 467

Query: 573 LAQ-----LHQLRGRVGRGEEISSCILLYHP 598
           L Q     LH+  GR GR  +  + I ++ P
Sbjct: 468 LPQDPESFLHR-SGRTGRAGKSGTAIAMFQP 497


>gi|73540602|ref|YP_295122.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 537

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/358 (20%), Positives = 148/358 (41%), Gaps = 45/358 (12%)

Query: 302 VGSGKT-------LVALIAMAAAVEAGGQ----AVIMAPIGILAQQHYEFIKKYTQNTQI 350
            G+GKT       +  L+ MA+A  +  +    A+++ P   LA Q Y+ + +Y ++T +
Sbjct: 100 TGTGKTAGFALPIIQRLLPMASASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDL 159

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHR 405
              ++ G +    +  AL R       I++ T         Q S+   ++ ++++DE  R
Sbjct: 160 RSTVVFGGVDMNPQTDALRR----GVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADR 215

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
                 L   Q+       ++   P  R TL+ ++    +I ++      ++P+   +  
Sbjct: 216 MLDMGFLPDLQR-------IINLLPAQRQTLLFSATFSPEIKRLAASYL-KQPVTIEVAR 267

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEHF 514
            N  +E + ++   + +G+K   +   + ++ E           N +    R     E  
Sbjct: 268 SNSTNENVRQMVYQVEDGQKQAAVVHLLRQRAEQGLSKQCIVFVNSKIGCSRLARHLERE 327

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + A IHG  +  ++   ++ FKNGT   L+AT V   G+D+ D   +I  +       
Sbjct: 328 GINAAAIHGDKTQTERMQTLEGFKNGTIDALVATDVAARGLDIADMPCVINFDLPFSAED 387

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSK-----NSYTRLSVLKNTEDGFLIAEEDLKQ 627
            +H++ GR GR       + ++ P   +         + SV + T +GF    E  +Q
Sbjct: 388 YVHRI-GRTGRAGASGDALSIFVPGDERLLTDIEKLIKRSVPRGTLEGFDPTGEKARQ 444


>gi|229553792|ref|ZP_04442517.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus LMS2-1]
 gi|229312844|gb|EEN78817.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus LMS2-1]
          Length = 448

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 134/318 (42%), Gaps = 32/318 (10%)

Query: 299 QGDVGSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-VEI 354
           Q   GSGKT   LV L+++    E   Q VI AP   LA Q Y   ++ TQ    I +  
Sbjct: 46  QSQTGSGKTHAFLVPLLSLVDPNEDATQVVITAPSRELANQIYAVAQQLTQTEPAIRISR 105

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           + G M    ++K ++++   Q H+ IGT     D I+ Y L+   V    R  V     +
Sbjct: 106 LVGGM---DKQKQIDKLQAHQPHVAIGTPGRILDMIKRYDLVPASV----RHFVVDEADM 158

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDE 470
           T        +   A+  P  L +         K+  +P  RK    P    + P + I +
Sbjct: 159 TLDMGFLETVDAIASSFPEHLQMAVFSATIPQKL--EPFLRKYMDHPTVIELKPQSVIAD 216

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHG 523
            +E + ++ ++G+    +  Q+            +N ++ V+  +   +H    +A IHG
Sbjct: 217 TVENI-LIAAKGRDKNELIYQLVTMGHPFLVLIFANTKTSVDAIHDYLKHQGLKVAKIHG 275

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII---IENAEHFGLAQLHQLR 580
            +   ++  +M    +   + ++AT +   GID+   S++I   I   + F + ++    
Sbjct: 276 GVQPRERRRIMKEVADLKYQYVVATDLAARGIDIKGVSMVINAEIPRDQEFFIHRV---- 331

Query: 581 GRVGRGEEISSCILLYHP 598
           GR GR     + I LY P
Sbjct: 332 GRTGRNGLPGTAITLYEP 349


>gi|256420016|ref|YP_003120669.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256034924|gb|ACU58468.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 436

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 140/344 (40%), Gaps = 54/344 (15%)

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKK 343
           D +QK   + IL  + GSGKTL  LI +   ++    G QA+++AP   LA Q  +  K 
Sbjct: 25  DANQKADNV-ILLSNTGSGKTLGFLIPILEQLDKTTPGTQALVIAPSRELAMQIEKVWKT 83

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------L 395
            T   ++      G++ +      LE  A     +IIGT     D I+           L
Sbjct: 84  MTTGFKVTC-CYGGHLRETEENNLLEAPA-----LIIGTPGRLGDHIRRENIKPAGIKLL 137

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD-IDISK------- 447
           +L   D+    G Q  ++           ++ + P  +  +LTS  + +DI         
Sbjct: 138 VLDEFDKSLELGFQDEIEF----------IIESLPGLKKRILTSATEAVDIPGFVGIEEP 187

Query: 448 -----ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI-CPQIEEKKESNFR 501
                +TE+ +    IK V       D++    ++V   G ++  I C         N R
Sbjct: 188 VRLNFLTEEKSEALAIKYV--ESEDKDKLDTLFRLVCFLGNRSTIIFC---------NHR 236

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             VER NS  +    +    HG M   D+++ +  F+NGT  +L+ T +   G+D+ +  
Sbjct: 237 EAVERTNSFLKDSGLTSVFYHGAMEQRDRDAALCKFRNGTSNILVTTDLAARGLDIPNIR 296

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
            I+  +  H      H+  GR  R +   + IL+  P     SY
Sbjct: 297 YIVHYHLPHTADTYTHR-NGRTARMDASGTAILIIGPDEKMPSY 339


>gi|168012549|ref|XP_001758964.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689663|gb|EDQ76033.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 125/294 (42%), Gaps = 46/294 (15%)

Query: 302 VGSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L+     + +       G  A+++AP   L  Q ++   K+  ++ I+   
Sbjct: 156 TGSGKTLGYLVPAFLHLASHRNNSRKGPTALVLAPTRELVMQIHDECAKFGTSSDIVGTC 215

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--- 406
           + G  P+  + + +ER       I I T     D ++  K+ L     +++DE  R    
Sbjct: 216 LYGGAPKGPQLRDIER----GVDIAIATPGRLNDFLEGRKVSLKQVSYLVLDEADRMLDM 271

Query: 407 GVQQRLKLTQKATAPH--VLLMTATPIPRTL-----------VLTSLGDIDISKITEKPA 453
           G + +++   + T+P    L+ TAT  PR +           V  S+G++D     +   
Sbjct: 272 GFEPQIRKIVENTSPQRQTLMYTAT-WPRKVRRMAADFLSNPVQVSIGNVDEFTANKAIT 330

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI---CPQIEEKKESNFRSVVERFNSL 510
               +K + + +    E   RL  +L   +K   I   C        S  R+       L
Sbjct: 331 QANKLKRLHVEVVESCEKQRRLVEMLRSQEKGSRIIIFC--------STKRACDTLTRCL 382

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              F +  A IHG  S  ++ESV+  F+NG   +L+AT V   G+DV D  +++
Sbjct: 383 GHEFGA--AAIHGDKSQDERESVLSHFRNGRTPVLVATDVAARGLDVKDIRVVV 434


>gi|195116347|ref|XP_002002717.1| GI17537 [Drosophila mojavensis]
 gi|193913292|gb|EDW12159.1| GI17537 [Drosophila mojavensis]
          Length = 389

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 125/291 (42%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q    +    +  ++   
Sbjct: 57  IAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSH 116

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-------QYYKL-ILVIVDEQHR 405
              G      R  A  RI     H+++GT     D I       QY KL +L   DE   
Sbjct: 117 ACIGGTNV--REDA--RILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLS 172

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + +++   K   P   V+L++AT  P  L ++            +   R+P+    I
Sbjct: 173 RGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVS------------RCFMREPVS---I 217

Query: 464 PINRIDEVIERLKVVLSEGKKAYW----ICPQIEE---KKESNFRSVVERFNSLHEHFTS 516
            + + +  +E +K      K+  W    +C   +     +   F +   + + L +  TS
Sbjct: 218 LVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMTS 277

Query: 517 ---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   D+E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 278 HNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 328


>gi|258511302|ref|YP_003184736.1| primosomal protein N' [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478028|gb|ACV58347.1| primosomal protein N' [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 805

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 99/213 (46%), Gaps = 35/213 (16%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q +A++  L +M+++   + +L G  GSGKT V +  +  A+E  GQA+++ P   L
Sbjct: 267 TPYQVAAVR-ALAEMARQGHGVALLHGVTGSGKTEVYMHLIRGAIEDEGQALVLVPEIAL 325

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             Q    ++++ +     V ++   +    RR+   R+  G+A ++IG  +     ++  
Sbjct: 326 TPQ---LVQRFERRFGGRVAVLHSGLSLGERREEWTRVLEGEASVVIGARSAVFAPMR-- 380

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPH-----------------VLLMTATPIPRTLV 436
           KL LV++DE+H    +Q         APH                 V+L +ATP   ++ 
Sbjct: 381 KLRLVVIDEEHEPSYKQE-------DAPHYDAREVAMWRAREAGALVVLGSATPSLASMF 433

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
               GD  +  +  + A R+P+     P++ ID
Sbjct: 434 RVERGDARLVSLPVR-ANRRPLP----PVDVID 461


>gi|189466192|ref|ZP_03014977.1| hypothetical protein BACINT_02562 [Bacteroides intestinalis DSM
           17393]
 gi|189434456|gb|EDV03441.1| hypothetical protein BACINT_02562 [Bacteroides intestinalis DSM
           17393]
          Length = 447

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 144/363 (39%), Gaps = 63/363 (17%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-- 320
           Q ILRN+       Q + +++  ++   +N+ L +L    GSGKTL  L+ +  +++   
Sbjct: 4   QDILRNLQVE----QLTPMQEATREAYHENKDL-VLLSPTGSGKTLAFLLPLVQSLKTNV 58

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G QAV++ P   LA Q     K  +  T        G  P     + ++ +      +I
Sbjct: 59  QGVQAVVLVPSRELALQIETVFK--SMGTPFKAMSCYGGRPAMEEHRTMKGV---NPSVI 113

Query: 380 IGTHALFQDSIQYYK-----LILVIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTAT 429
           IGT     D ++        +  +++DE  +   FG    +   + Q  +    +L++AT
Sbjct: 114 IGTPGRMNDHLRKENFDAGTVTTLVIDEFDKCLEFGFHDEMAEVIGQLPSLKKRILLSAT 173

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA---Y 486
                     +G    S ++    G + +K   +  + +   ++  KVV  E  K    Y
Sbjct: 174 DTEEIPQFAGVGGDSQSSVS----GSQLVKLNFLDPDALAPRLKLHKVVSPEKDKLEILY 229

Query: 487 WICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            +   +         N+R  VER     +       + HG M   D+E  +  F+NG+C 
Sbjct: 230 NLLCTLGYHSTLVFCNYRDSVERVTGYLQAKKFPCDMFHGGMEQPDRERALYKFRNGSCS 289

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +LI+T +   G+D+       IEN  H                         YHPP+++ 
Sbjct: 290 VLISTDLAARGLDIPG-----IENVVH-------------------------YHPPVNEE 319

Query: 604 SYT 606
           +YT
Sbjct: 320 AYT 322


>gi|308509208|ref|XP_003116787.1| CRE-DDX-19 protein [Caenorhabditis remanei]
 gi|308241701|gb|EFO85653.1| CRE-DDX-19 protein [Caenorhabditis remanei]
          Length = 1015

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 149/339 (43%), Gaps = 62/339 (18%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG- 321
           + L N+ F  PT+ QE+A+  +L  M   + +  I Q   G+GKT   ++ M   ++   
Sbjct: 616 QALDNLNFQFPTRIQETALPLLL--MEPPSNL--IAQAQSGTGKTAAFVLTMLCRIDVNL 671

Query: 322 --GQAVIMAPIGILAQQHYEFIKK---YTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
              Q + +AP   LA+Q  E ++K   Y +N +I   I  GNM     RK  E+I  G  
Sbjct: 672 KCPQCICLAPTLELAKQIGEVVEKMGKYMENLKIHYAIKGGNMAAMRGRKLTEQIVIGTP 731

Query: 377 HIIIGTHALF----QDSIQYYKLI------LVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            I+  +H LF    +D +Q YK I       +++DE       Q    T  +T  + ++ 
Sbjct: 732 GIV--SH-LFIYKTRDYLQKYKCIDPSQIRCLVLDEADVMIYHQ--GFTDISTTIYNMVE 786

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
            A+   ++++ ++  D  +     K           I  N I  +++R +  L   K+ Y
Sbjct: 787 EASESVQSMLFSATYDQPVIDFATK-----------IIKNAIVVMLKREEQALPNIKQFY 835

Query: 487 WICPQIEEKKESNFRSVVERFNS------------------LHEHFTS---SIAIIHGRM 525
             C      ++S + ++V  ++                   L+E+  +    + ++HG M
Sbjct: 836 VQC----ACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENMKARGHKVDVLHGDM 891

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           + +++   +  FK G  K+LI T V   GIDV   S++I
Sbjct: 892 TVVERADTIIRFKRGDFKVLITTNVFARGIDVAQVSVVI 930


>gi|195126028|ref|XP_002007476.1| GI12369 [Drosophila mojavensis]
 gi|193919085|gb|EDW17952.1| GI12369 [Drosophila mojavensis]
          Length = 794

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 137/328 (41%), Gaps = 55/328 (16%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  NTQ+   
Sbjct: 189 TGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVASEFGSNTQVRNT 248

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF-- 406
            I G  P+  + + LER       I+I T       L + +    +   +++DE  R   
Sbjct: 249 CIFGGAPKGQQARDLER----GVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLD 304

Query: 407 -GVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            G + ++ K+ Q+      +LM +   P+ +       L +   ++I  ++         
Sbjct: 305 MGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLS------A 358

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFT 515
              I+ I  +D   E  K+V     K   +  QI  + E+    F    +R + +  + +
Sbjct: 359 NHNILQI--VDVCDESEKIV-----KLIQLLTQISGENETKTIIFVETKKRVDEITRNIS 411

Query: 516 SS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENA 568
                   IHG  S  +++ V+ SF+NG   +L+AT V   G+DV D   +I      N+
Sbjct: 412 RQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNS 471

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY 596
           E +    +H++ GR GR     +   L+
Sbjct: 472 EDY----VHRI-GRTGRSNNTGTAYTLF 494


>gi|160893327|ref|ZP_02074114.1| hypothetical protein CLOL250_00876 [Clostridium sp. L2-50]
 gi|156865019|gb|EDO58450.1| hypothetical protein CLOL250_00876 [Clostridium sp. L2-50]
          Length = 750

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 152/418 (36%), Gaps = 92/418 (22%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           N   +    Q++ + ++  DM Q  +   +L G  GSGKT V +  +   +E G QA+I+
Sbjct: 207 NFQITLNNEQQAVVDEVTGDMEQGRQKTYLLHGITGSGKTEVYVKIVKKTIEMGKQAIIL 266

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALF 386
            P   L  Q   + + Y  +    V II   +    +     R  +G   ++IG   ALF
Sbjct: 267 IPEIALTYQTVRYFRNYFGDR---VTIINSRLSDGEKYDQFMRAKNGDVDVVIGPRSALF 323

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQ--------RLKLTQKATAPH--VLLMTATPIPRTLV 436
                +  L ++I+DE+H    +         R    ++A   H  VLL +ATP   +  
Sbjct: 324 ---APFQNLGIIIIDEEHETSYKSDYPPKYHARETAVKRAELEHASVLLGSATPSVESYH 380

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINR--------------IDEVIERL----KVV 478
               G   + ++ E+    +  KT I+ + +               D++ +RL    +V+
Sbjct: 381 RALNGTYRLLELHERAGSGQLAKTSIVDLRKELKAGNRSIISRELADDIADRLARRQQVM 440

Query: 479 LSEGKKAY------------WICPQIEEK--KESNFRSVVERFN----------SLHEHF 514
           L   K+ Y              CP  +    +  N R +               S H   
Sbjct: 441 LFINKRGYNSFVSCRNCGEALKCPHCDVSLTRHENNRMICHYCGFQMPQPKVCPSCHSGL 500

Query: 515 TSSIA-------------IIHGRMSDIDK---------ESVMDSFKNGTCKLLIATTVIE 552
                                 R+  +DK         E +++ F NG   +L+ T +I 
Sbjct: 501 IGGYGTGTQKLEEEVQRLFPQARVLRMDKDTTAAKDAHEQILEKFGNGEADILVGTQMIV 560

Query: 553 VGID--------VVDASIIIIENAEHFG---LAQLHQLRGRVGRGEEISSCILLYHPP 599
            G D        ++ A + + +N    G      + Q  GR GRG +    ++  + P
Sbjct: 561 KGHDFSNVTLVGIILADLTLFQNDYRAGERTFDLITQAAGRAGRGTQPGKVVIQTYKP 618


>gi|147678127|ref|YP_001212342.1| primosomal protein N' [Pelotomaculum thermopropionicum SI]
 gi|146274224|dbj|BAF59973.1| primosomal protein N' (replication factor Y) - superfamily II
           helicase [Pelotomaculum thermopropionicum SI]
          Length = 746

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 21/170 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            + QE+A+++I   + +    + +L G  GSGKT V L A+AAA+E G QAV + P   L
Sbjct: 208 NQDQEAALREISASLDRGRFDVFLLHGITGSGKTEVYLRAIAAALETGRQAVALVPEISL 267

Query: 334 AQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q  E F  ++     ++   ++G      R +   R+  GQA +++GT  A+F     
Sbjct: 268 TPQMVELFRGRFGGQVAVLHSALSGG----ERYQEWRRVKEGQASVVLGTRSAVFAPCP- 322

Query: 392 YYKLILVIVDEQHRFGVQQ-----------RLKLTQKATAPHVLLMTATP 430
             +  L I+DE+H    +Q            LK  Q A A  V+L +ATP
Sbjct: 323 --RPGLFIIDEEHEPSYKQDDHMRYHAREIALKRAQLAGAV-VVLGSATP 369


>gi|219521150|gb|AAI72016.1| Ddx3x protein [Mus musculus]
          Length = 661

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 170/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 129 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 183

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 184 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 237

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + A G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 238 LSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 297

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 298 VVYGGAEIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 353

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 354 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 412

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  ID+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 413 NITQKVVWVEEIDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 465

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 466 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 513


>gi|47086809|ref|NP_997777.1| probable ATP-dependent RNA helicase DDX5 [Danio rerio]
 gi|37362204|gb|AAQ91230.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Danio rerio]
          Length = 518

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 138/344 (40%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y + ++I   
Sbjct: 142 TGSGKTLSYLLPAIVHINHQPFLEHGDGPICLVLAPTRELAQQVQQVAAEYGKASRIKST 201

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  PQ  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 202 CIYGGAPQGPQIRDLER----GVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLD 257

Query: 406 --FGVQ----------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             F  Q           R  L   AT P  +   A    +  +  ++G + +S      A
Sbjct: 258 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYIQINVGALQLS------A 311

Query: 454 GRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +  +  + D++I  L+ ++SE           +E K   F     R + L 
Sbjct: 312 NHNILQIVDVCNDGEKEDKLIRLLEEIMSE-----------KENKTIIFVETKRRCDDLT 360

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  +  +++ V++ FK G   +LIAT V   G+DV D   +I  + 
Sbjct: 361 RRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINFDY 420

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R ++  +    + P   K ++  +SVL+
Sbjct: 421 PNNSEDYIHRI-GRTARSQKTGTAYTFFTPNNMKQAHDLVSVLR 463


>gi|90420716|ref|ZP_01228622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335007|gb|EAS48768.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 583

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 153/352 (43%), Gaps = 55/352 (15%)

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGG-QAVIMAPIG 331
           ++D + +    +R L ++    GSGKT+   +A+A  +         AG   A+I+AP  
Sbjct: 25  VQDAVLEPQAADRDL-LVSAQTGSGKTIAYGLALAPTLLGEAERFGPAGAPMALIVAPTR 83

Query: 332 ILAQQ-HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            LA Q   E    Y Q    +V  + G  P+A +RK    +A G AHI++GT    +D +
Sbjct: 84  ELAMQVTTELAWLYAQTGAEMVTCVGGMDPRAEKRK----LAQG-AHIVVGTPGRLRDHL 138

Query: 391 Q--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTSL 440
           +           L+L   DE    G ++ L+   +AT      LL +AT +P+  +++S+
Sbjct: 139 ERGALQIGGLKALVLDEADEMLNLGFREDLEFLLEATPRERRTLLFSAT-LPK--LISSM 195

Query: 441 G-----DIDISKITEKPAGRKPI--KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
                 D    + T   A    I  K + I  N ++  +  + +  ++   A   C    
Sbjct: 196 AKRYQRDALRIEATRSSAAHADIEYKAIRIAPNELEHAVVNV-LRFNDAPSAIVFC---- 250

Query: 494 EKKESNFRSVVERFNS--LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                N R  V   +S  L   F  S   + G +   ++   M + ++G  ++ +AT V 
Sbjct: 251 -----NTREAVRHLSSGLLERGF--SAVTLSGELGQAERNQAMQALRDGRARVCVATDVA 303

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILLYHPPLSK 602
             GID+   +++I  +A+    A+  Q R GR GR       +LL   P+S+
Sbjct: 304 ARGIDLPGLALVI--HADLPSDAETLQHRSGRTGRAGRKGISVLLV--PISR 351


>gi|6753620|ref|NP_034158.1| ATP-dependent RNA helicase DDX3X [Mus musculus]
 gi|2500528|sp|Q62167|DDX3X_MOUSE RecName: Full=ATP-dependent RNA helicase DDX3X; AltName:
           Full=D1Pas1-related sequence 2; AltName: Full=DEAD box
           RNA helicase DEAD3; Short=mDEAD3; AltName: Full=DEAD box
           protein 3, X-chromosomal; AltName: Full=Embryonic RNA
           helicase
 gi|407996|gb|AAA53630.1| RNA helicase [Mus musculus]
 gi|1835122|emb|CAA86261.1| dead-box RNA helicase [Mus musculus]
 gi|74187753|dbj|BAE24540.1| unnamed protein product [Mus musculus]
 gi|74190343|dbj|BAE37257.1| unnamed protein product [Mus musculus]
 gi|123858229|emb|CAM15722.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Mus
           musculus]
 gi|1098036|prf||2115205A RNA helicase
          Length = 662

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 170/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + A G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGAEIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 413

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  ID+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 414 NITQKVVWVEEIDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 466

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|116619820|ref|YP_821976.1| replication restart DNA helicase PriA [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116222982|gb|ABJ81691.1| replication restart DNA helicase PriA [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 806

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 17/166 (10%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILA 334
           +Q++A + I   +  +     +L G  GSGKT V L A+  A+EAG  A++M P I +  
Sbjct: 273 AQQAAFEQIRDAILARRFQTFLLHGVTGSGKTEVYLSAIETALEAGRSALLMVPEIALTP 332

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           Q   +F  ++     I+    T       R +   RI  G A +++GT +     +Q   
Sbjct: 333 QMAGQFFSRFGDRVAILHSAFT----DVERTEQWRRIRSGAASVVVGTRSGVFAPVQ--N 386

Query: 395 LILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP 430
           L L++VDE+H          R+  +    +  +A    V+L +ATP
Sbjct: 387 LGLIVVDEEHDGSYKQEENPRYNGRDVAIVRAQAAGACVILGSATP 432


>gi|254519244|ref|ZP_05131300.1| primosome assembly protein PriA [Clostridium sp. 7_2_43FAA]
 gi|226912993|gb|EEH98194.1| primosome assembly protein PriA [Clostridium sp. 7_2_43FAA]
          Length = 732

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 84/405 (20%), Positives = 157/405 (38%), Gaps = 100/405 (24%)

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKK 343
           L+ + + ++ + +L+G  GSGKT V +  ++  +  G  A+++ P I +  Q    F  +
Sbjct: 207 LEKIEKSDKNMFLLKGVTGSGKTEVYMKLVSDTIAEGKCAIVLVPEISLTPQMIERFKGR 266

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDE 402
           + +     V +    +    R     R+  G+A +IIG   ALF   +   KL ++I+DE
Sbjct: 267 FGRE----VAVFHSKLSDGERYDEWFRVKEGKAKLIIGARSALF---LPAPKLGIIIIDE 319

Query: 403 QHR--FGVQQRLKLTQKATAP--------HVLLMTATPIPRTLVLTSLGDIDI----SKI 448
           +H   +  +Q  K   +  A          V+L +ATP   T      G+I++    ++I
Sbjct: 320 EHEGTYKSEQNPKYATREVAEFLSEIKDCKVILGSATPSIETYYRAITGEIELVELNNRI 379

Query: 449 TEKPA--------------------GRKPIKTVIIPINRIDEVI---------------- 472
             KP                      RK    +   +N+ +++I                
Sbjct: 380 DNKPMPIMDIVDMREELNSGNVSMFSRKLFTEIKEALNKKEQIILFLNRRGFSTFVSCRS 439

Query: 473 -------ERLKVVLSEGKKAYWI-------------CPQIEEKKESNFRSVVERFNSLHE 512
                   +  + ++  K  Y +             CP+ + K   +F +  ER      
Sbjct: 440 CGYVFKCPKCDISMTFHKNGYLVCHYCGYAQKQQKICPKCKSKYVKHFGAGTERVEEEVR 499

Query: 513 HFTSSIAIIHGRMSDIDK-------ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            + S   ++  RM D+D        E +  +FKNG   +LI T +I  G+D  + +++ I
Sbjct: 500 KYFSDARVL--RM-DVDTTRNKNSHEEIYKAFKNGEGDILIGTQMISKGLDFENVTLVGI 556

Query: 566 ENAE-----------HFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             A+                 + Q+ GR GRG +    I+  + P
Sbjct: 557 LAADMSINIPDYRSSERTFQIVTQVAGRAGRGSKEGKVIVQTYNP 601


>gi|313114933|ref|ZP_07800430.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622755|gb|EFQ06213.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 395

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 148/336 (44%), Gaps = 31/336 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I +   G+GKT    I +A  +       QAVIMAP   LAQQ  + +++ T    ++ V
Sbjct: 42  IAKAPTGTGKTCAFGIPVAEHILPENKYPQAVIMAPTRELAQQIAQELEELTYFMPEVQV 101

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY--------KLILVIVDEQH 404
             + G    A+  K  +R+A G   I++ T     D  +++        +++L   DE  
Sbjct: 102 ACVYGG---ANMEKQAKRLAEG-CQIVVATPGRLMDHYKHHSIDISHVTQIVLDEADEML 157

Query: 405 RFGVQQRLK-LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKP--AGRKPIKT 460
             G  + ++ + +   A   L M +  I R ++ +  L   +  +IT +P    +  I  
Sbjct: 158 NMGFYKDVRHIIEMMKARKSLSMFSATISREVMDIGWLYQHNAEEITVQPKEESQPKITQ 217

Query: 461 VIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            ++  +  +++ +  ++++ E  K+    C       ++ F +     N L      S+ 
Sbjct: 218 YMLETSGRNKLSDLAQIIIGENYKRVMVFC-------DTKFNTAT-LANQL-ARLGFSVD 268

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG +S  ++  +M +F++G   +L+AT V   GIDV D   +I  +         H++
Sbjct: 269 CLHGDLSQKERNQIMQNFRDGKLAILVATDVAARGIDVSDVDAVINYDVPSENEHYTHRI 328

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
            GR GR ++     L Y P   K     L + +NT+
Sbjct: 329 -GRTGRAKKEGVSYLFYVPEEKKRVQELLRLTRNTD 363


>gi|293395719|ref|ZP_06640001.1| ATP-independent RNA helicase DbpA [Serratia odorifera DSM 4582]
 gi|291421656|gb|EFE94903.1| ATP-independent RNA helicase DbpA [Serratia odorifera DSM 4582]
          Length = 445

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 147/343 (42%), Gaps = 48/343 (13%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           T  Q +A+  IL  QD+  K +         GSGKT    + L+      +   QA+I+ 
Sbjct: 13  TPVQAAALPAILNGQDVRAKAK--------TGSGKTAAFGIGLLDKINVSQVATQALILC 64

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q       + ++TQN +I+   + G  P   +   L+ + H   HI++GT   
Sbjct: 65  PTRELADQVSKELRRLARFTQNIKILT--LCGGQPMGAQ---LDSLVHA-PHIVVGTPGR 118

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            Q+ ++   L+L     +++DE  R      L +        V+  T  P  +TL+ ++ 
Sbjct: 119 IQEHLRKKTLVLDEVKVLVLDEADRM-----LDMGFADDIDQVISYT-PPQRQTLLFSAT 172

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
               I +I+++   R P+   +   +    + +R      + + A  +      +  S  
Sbjct: 173 YPAGIERISDR-VQRAPLSVEVDDGDAPTTIAQRFYETTRDQRPALLVAAIRHFQPTSCV 231

Query: 501 ------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R     F +L     S +A+ HG +   D++ V+  F N +C++L+AT V   G
Sbjct: 232 VFCNTKRDCQSVFEALEARGISVLAL-HGDLEQRDRDQVLVRFANRSCRVLVATDVAARG 290

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
           +D+ D  +++  N E     ++H  R GR GR    G  IS C
Sbjct: 291 LDIKDLELVV--NYELSFDPEVHVHRIGRTGRAGMSGLAISLC 331


>gi|242787406|ref|XP_002481000.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500]
 gi|218721147|gb|EED20566.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500]
          Length = 543

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 146/343 (42%), Gaps = 51/343 (14%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +     + A        G   +I+AP   LA Q    I K+ ++++I 
Sbjct: 160 AETGSGKTLTYCLPAIVHINAQPLLSPGDGPIVLILAPTRELAVQIQTEISKFGRSSRIR 219

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G +P+  + + L R       + I T     D ++  K  L     +++DE  R 
Sbjct: 220 NTCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRM 275

Query: 406 ----FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KI 448
               F  Q R  ++Q           AT P  +   A+      +  ++G +D+S   +I
Sbjct: 276 LDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNDFIQVNIGSMDLSANHRI 335

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           T+       I  V+    + D++I+ L+ ++ + K    I    +   +      + RF 
Sbjct: 336 TQ-------IVEVVSDFEKRDKMIKHLEKIMDDRKNKCLIFTGTKRVADD-----ITRF- 382

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L +    +++I HG     +++ V+  FKNG   +++AT V   GIDV D + +I  + 
Sbjct: 383 -LRQDGWPALSI-HGDKQQNERDWVLQEFKNGKSPIMVATDVASRGIDVRDITHVINYDY 440

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            +     +H++ GR GR     + I  +    SK +   +++L
Sbjct: 441 PNNSEDYVHRI-GRTGRAGAKGTAITFFTTDNSKQARDLVTIL 482


>gi|330944943|gb|EGH46750.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 420

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 152/346 (43%), Gaps = 47/346 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  ++   I V
Sbjct: 74  IAQAKTGSGKTAAFGIGLLNPINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKV 133

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 134 LTLCGGVSFGPQIGSLE---HG-AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRM- 188

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++   + I +++ K   R P +TV +   
Sbjct: 189 ------LDMGFYDAIADIIEQTPQRRQTLLFSATYPVGIKQLSSKFM-RDP-QTVKVEAL 240

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAI 520
             D  IE++   +S  ++   +   +   + ++   F    ++   + +H T+   S   
Sbjct: 241 HADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVG 300

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++ V+  F N +  +L+AT V   G+D +DA  ++I N E    +++H  R
Sbjct: 301 LHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVI-NVELARDSEIHIHR 358

Query: 581 -GRVGRGEEISSCILLYHP---------------PLSKNSYTRLSV 610
            GR GR  E    + L  P               PL+   Y RLS+
Sbjct: 359 VGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQQYDRLSI 404


>gi|327191069|gb|EGE58122.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
          Length = 499

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 153/363 (42%), Gaps = 50/363 (13%)

Query: 261 IAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++QK+L  +      +PT  Q  AI   L+    +  +  I Q   G+GKT   ++ M +
Sbjct: 9   LSQKVLSAVADAGYSTPTPIQAGAIPFALE----RRDICGIAQ--TGTGKTASFVLPMLS 62

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q  E  +KY +N ++ V ++ G +    + + LER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER 122

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKA 418
                A ++I T     D  +  KL++     +++DE  R         +++  KL    
Sbjct: 123 ----GADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFT 178

Query: 419 TAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKTVIIPINRID----EVI 472
                L  +AT  P    L    L + +  ++ +  +  K +    +  +  D     V+
Sbjct: 179 R--QTLFFSATMPPEIQKLADRFLQNPERVEVAKPASAAKTVTQRFVASHSKDYEKRAVL 236

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
             L     E K A   C     KK+     V + F SL  H   S+  +HG M    + +
Sbjct: 237 RELVRAQGELKNAIIFC---NRKKD-----VADLFRSLERH-GFSVGALHGDMDQRSRTT 287

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           ++ +F++G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR     + 
Sbjct: 288 MLQNFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRI-GRTGRAGRSGAA 346

Query: 593 ILL 595
             L
Sbjct: 347 FTL 349


>gi|195437123|ref|XP_002066494.1| GK18312 [Drosophila willistoni]
 gi|194162579|gb|EDW77480.1| GK18312 [Drosophila willistoni]
          Length = 1424

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 158/394 (40%), Gaps = 89/394 (22%)

Query: 246  QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD------------------ 287
             F K   IP+ V G+   K ++         +E+ ++DIL D                  
Sbjct: 992  NFSKYDNIPVKVSGENPPKPVKTF-------EEAKLRDILMDNIKKSAYTVPTPIQKVSI 1044

Query: 288  --MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QAVIMAPIGILAQQH 337
              +S    ++   Q   GSGKT   L+ +   +   G        QA+IM+P   LA Q 
Sbjct: 1045 PVISAGRDLMACAQ--TGSGKTAAFLLPILNHILDKGYELEIGKPQAIIMSPTRELAVQI 1102

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----Y 392
            +   +K+  N+ + + I+ G     ++    E I  G  HI+I T     D ++     +
Sbjct: 1103 FNEARKFAHNSYLKITIVYGGTSVKYQN---ESITKG-CHILIATPGRLLDFVERTFITF 1158

Query: 393  YKLILVIVDEQHRF---GVQQRLK--------------LTQKATAPHVLLMTATPIPRTL 435
                 V++DE  R    G  + ++              L   AT P  +   A    R  
Sbjct: 1159 EDTRFVVLDEADRMLDMGFSESMRKIITHPTMRKEHQTLMFSATFPEEIQRMAGEFLRDY 1218

Query: 436  VLTSLGDID--ISKITEKPAGRKPIKTVIIPINRIDEVIERLKV--VLSEGKKAYWICPQ 491
            V  ++G I    S +T+              I  +D+  +R K+  +L +G     +   
Sbjct: 1219 VFVTIGVIGGACSDVTQT-------------IYEVDKFNKRAKLMEILRDGADGTIVF-- 1263

Query: 492  IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +E K+ ++F   +  F S  E  T+SI   HG      +E  +  FK+G  K+LIAT+V 
Sbjct: 1264 VETKRGADF---LASFFSETEFPTTSI---HGDRLQSQREQALREFKSGKMKVLIATSVA 1317

Query: 552  EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              G+D+ + S +I  +        +H++ GR GR
Sbjct: 1318 SRGLDIKNVSHVINYDMPSTIDDYVHRI-GRTGR 1350


>gi|156540308|ref|XP_001599155.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 488

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 150/350 (42%), Gaps = 67/350 (19%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P+K QE+A+  +L +  Q      I Q   G+GKT   ++AM + V+      Q + ++
Sbjct: 123 APSKIQETALPTLLANPPQN----MIAQSQSGTGKTAAFVLAMLSRVDTSKPYPQVLCLS 178

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  +    I       M  A + + L R    + H++IGT     D
Sbjct: 179 PTYELAVQTGEVAAKMAKFCPDI------KMKFALKGETLARGTRIEEHVLIGTPGKIMD 232

Query: 389 -SIQYY-----KLILVIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            SI++      K+   ++DE        G Q +     K  +P   +M  +    T V+ 
Sbjct: 233 WSIKFKFFDIKKITAFVLDEADIMIATQGHQDQCIRIHKMLSPSCQMMFFSATYDTEVM- 291

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
                + +++  K A        II + + +E +E +K       + Y  C  IEEK + 
Sbjct: 292 -----EFAELIVKNA-------TIIRLQKEEESLENIK-------QYYVKCGNIEEKYQA 332

Query: 498 -SNFRSVVERFNS------------LHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGT 541
            +N   V+    +            L +  T    S+AI+ G ++  D+ SV+D F+ G 
Sbjct: 333 ITNIYGVITIGQAIIFCQTKKTACWLSDKMTQDGHSVAILSGDLTVEDRISVLDRFREGL 392

Query: 542 CKLLIATTVIEVGIDVVDASII------IIENAEHFGLAQLHQLRGRVGR 585
            K+LI T V+  GIDV   +I+      + +N +      LH++ GR GR
Sbjct: 393 EKVLITTNVLARGIDVEQVTIVVNFDLPVDQNQQADYETYLHRI-GRTGR 441


>gi|15230730|ref|NP_187299.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75313790|sp|Q9SQV1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40
 gi|6437557|gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana]
 gi|332640879|gb|AEE74400.1| DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana]
          Length = 1088

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 134/308 (43%), Gaps = 40/308 (12%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI               G   +I+AP   LA Q  +   ++ ++++I    
Sbjct: 481 TGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTC 540

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF--- 406
           + G  P+  + K LER     A I++ T     D      I + ++ L+++DE  R    
Sbjct: 541 LYGGAPKGPQLKELER----GADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDM 596

Query: 407 GVQQRLKLTQKATAP--HVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
           G + +++       P    L+ TAT  P+ +      +L +   ++I ++ E  A +   
Sbjct: 597 GFEPQIRKIVNEIPPRRQTLMYTAT-WPKEVRKIASDLLVNPVQVNIGRVDELAANKAIT 655

Query: 459 KTV-IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + V ++P    +  +E++      G K    C        S  R       S+  HF + 
Sbjct: 656 QYVEVVPQMEKERRLEQILRSQERGSKVIIFC--------STKRLCDHLARSVGRHFGA- 706

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
             +IHG  +  +++ V++ F++G   +LIAT V   G+D+ D  ++I  +        +H
Sbjct: 707 -VVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVH 765

Query: 578 QLRGRVGR 585
           ++ GR GR
Sbjct: 766 RI-GRTGR 772


>gi|242051919|ref|XP_002455105.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
 gi|241927080|gb|EES00225.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
          Length = 673

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 137/319 (42%), Gaps = 40/319 (12%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L+        +      G   ++++P   LA Q  +   K+ ++++I    
Sbjct: 203 TGSGKTLGYLLPGFILLKRLQHNSREGPTVLVLSPTRELATQIQDEAIKFGRSSRISSTC 262

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--- 406
           + G  P+  + + LER     A +++ T     D ++  K+ L     +++DE  R    
Sbjct: 263 LYGGAPKGPQLRELER----GADVVVATPGRLNDILEMNKVSLRQVSYLVLDEADRMLDM 318

Query: 407 GVQQRLKLTQKATAP--HVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
           G + +++   K   P    L+ TAT  P+ +      +L +   ++I    +  A +   
Sbjct: 319 GFEPQIRKIVKQIPPRRQTLMYTAT-WPKEVRRIASDLLNNPVQVNIGNTDQLVANKSIT 377

Query: 459 KTV-IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + V +IP       ++++      G K    C        S  R   +   +L   + +S
Sbjct: 378 QHVEVIPHMEKSRRLDQILRSQDPGSKIIIFC--------STKRMCDQLARNLSRQYGAS 429

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              IHG  S  +++SV++ F++G C +L+AT V   G+D+ D  +++  +        +H
Sbjct: 430 A--IHGDKSQSERDSVLNDFRSGRCPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVH 487

Query: 578 QLRGRVGRGEEISSCILLY 596
           ++ GR GR     S    +
Sbjct: 488 RI-GRTGRAGATGSAYTFF 505


>gi|193641205|ref|XP_001950880.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Acyrthosiphon pisum]
          Length = 569

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 150/343 (43%), Gaps = 48/343 (13%)

Query: 303 GSGKTLV----ALIAMAAAVEA-----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           G+GKTL     ALI +           G   +I+ P   L  Q ++ I KY  N   +V 
Sbjct: 232 GTGKTLAYILPALIHLLQQPTPRIKRIGPSVLILGPTRELVLQIHDEITKYLHNNIKVVC 291

Query: 354 IITGNMPQAHRRKALER-------IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           +  G +     ++ ++           G+ + ++G  A+  D + Y  ++L   D     
Sbjct: 292 VYGGGVSALTHQELIQAEKPDIIVATPGRLNDLVGIQAIKLDHVSY--MVLDEADRMLDM 349

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI--IP 464
           G + +++L+ +    H+      P  +T++ ++     +  +    A + P+   I  + 
Sbjct: 350 GFKNQIELSLR----HI-----RPDKQTILTSATWPTAVQNLANYFA-KNPLHITIGSLD 399

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS--- 516
           ++ +D V +++ ++L E +K  W+   I      N + ++        + ++E+F S   
Sbjct: 400 LSTVDTVTQKI-IILKEHQKEGWLDNFISNDLSKNDKVIIFMRKKTSVDKMYENFNSKNI 458

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE----NAEHFG 572
               IHG     D+E+ +   +NG   +LIAT V   GID+ D S++I      N E + 
Sbjct: 459 GCRCIHGGRLQADREASLADIRNGVVSILIATDVASRGIDIHDISLVINYDFPLNIEEY- 517

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +H++ GR GR  +  S I L+      N+   + VL+ ++
Sbjct: 518 ---VHRV-GRTGRAGKTGSAITLFSKYDKFNASALIGVLEKSK 556


>gi|254700936|ref|ZP_05162764.1| DEAD-box ATP dependent DNA helicase [Brucella suis bv. 5 str. 513]
 gi|261751452|ref|ZP_05995161.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261741205|gb|EEY29131.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
          Length = 626

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 42/330 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     +HI++GT    +D I        Q   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GSHIVVGTPGRLRDHITRNALDMSQLRAIVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD----IDISKITEKP 452
            DE    G ++ L+  L +       L+ +AT P P   +     +    I +   T + 
Sbjct: 157 ADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQH 216

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    +   + P  R   +I  L  +  + + +   C         + R  V+   S   
Sbjct: 217 ADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRLS 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 266 NRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
              LH+  GR GR     +C+L+   P S+
Sbjct: 326 DTLLHR-SGRTGRAGRKGTCVLVV--PFSR 352


>gi|297171093|gb|ADI22105.1| transcription-repair coupling factor (superfamily II helicase)
           [uncultured Planctomycetales bacterium HF0200_11L05]
          Length = 230

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 5/76 (6%)

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLS--KNSYTRLSVLKNTED---GFLIAEEDL 625
            GL+QLHQLRGRVGRG++ +    L    +S  K +  RL  L+++     GFL++ +DL
Sbjct: 1   MGLSQLHQLRGRVGRGKKQAYAYFLKSNRISKRKKADKRLQALQDSNSLSAGFLLSLKDL 60

Query: 626 KQRKEGEILGIKQSGM 641
           + R  GEILG  QSG+
Sbjct: 61  EARGAGEILGEHQSGI 76


>gi|190407384|gb|EDV10651.1| ATP-dependent RNA helicase DDX25 [Saccharomyces cerevisiae RM11-1a]
 gi|207341250|gb|EDZ69357.1| YOR046Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259149529|emb|CAY86333.1| Dbp5p [Saccharomyces cerevisiae EC1118]
 gi|323335582|gb|EGA76866.1| Dbp5p [Saccharomyces cerevisiae Vin13]
 gi|323352404|gb|EGA84939.1| Dbp5p [Saccharomyces cerevisiae VL3]
          Length = 482

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 157/371 (42%), Gaps = 63/371 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           P+K QE A+  +L +  +      I Q   G+GKT    + M   V   +A  QA+ +AP
Sbjct: 115 PSKIQERALPLLLHNPPRN----MIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 170

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E +++  + T+I  ++I  +        + E+     + +I+GT     D 
Sbjct: 171 SRELARQTLEVVQEMGKFTKITSQLIVPD--------SFEKNKQINSQVIVGTPGTVLDL 222

Query: 390 I-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +     Q  K+ + ++DE      QQ L          + +    P    LVL S    D
Sbjct: 223 MRRKLMQLQKIKIFVLDEADNMLDQQGL------GDQCIRVKRFLPKDTQLVLFSATFAD 276

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------- 497
                   A R+  K ++   N ++  ++  +V +   K+ Y  C    +K +       
Sbjct: 277 --------AVRQYAKKIVPNANTLE--LQTNEVNVDAIKQLYMDCKNEADKFDVLTELYG 326

Query: 498 -----SN--FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                S+  F +  +  N L+    S    ++I+HG +   +++ ++D F+ G  K+LI 
Sbjct: 327 LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLIT 386

Query: 548 TTVIEVGIDVVDASIII------IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           T V+  GID+   S+++      + N +      +H++ GR GR       I   H    
Sbjct: 387 TNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRI-GRTGRFGRKGVAISFVH---D 442

Query: 602 KNSYTRLSVLK 612
           KNS+  LS ++
Sbjct: 443 KNSFNILSAIQ 453


>gi|148559538|ref|YP_001258161.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|256368588|ref|YP_003106094.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|148370795|gb|ABQ60774.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
 gi|255998746|gb|ACU47145.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
          Length = 626

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 42/330 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     +HI++GT    +D I        Q   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GSHIVVGTPGRLRDHITRNALDMSQLRAIVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD----IDISKITEKP 452
            DE    G ++ L+  L +       L+ +AT P P   +     +    I +   T + 
Sbjct: 157 ADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQH 216

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    +   + P  R   +I  L  +  + + +   C         + R  V+   S   
Sbjct: 217 ADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRLS 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 266 NRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
              LH+  GR GR     +C+L+   P S+
Sbjct: 326 DTLLHR-SGRTGRAGRKGTCVLVV--PFSR 352


>gi|157371044|ref|YP_001479033.1| ATP-dependent RNA helicase DbpA [Serratia proteamaculans 568]
 gi|157322808|gb|ABV41905.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 460

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 150/343 (43%), Gaps = 48/343 (13%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           T  Q +A+  IL  QD+  K +         GSGKT    + L+      +   QA+I+ 
Sbjct: 28  TPVQAAALPAILNGQDVRAKAK--------TGSGKTAAFGIGLLDKINVAQVAAQALILC 79

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q       + ++TQN +I+   + G  P   +   L+ + H   HI++GT   
Sbjct: 80  PTRELADQVSKELRRLARFTQNIKILT--LCGGQPMGPQ---LDSLVHA-PHIVVGTPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            Q+ ++   L+L     +++DE  R      L +        V+  T  P  +TL+ ++ 
Sbjct: 134 IQEHLRKKTLVLDELKVLVLDEADRM-----LDMGFADDIDDVISYTP-PQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
               I +I+ +   R P+   +        + +R      + + A  +   I   + S+ 
Sbjct: 188 YPSGIERISAR-VQRSPLNVEVDDGEEQTTIEQRFYETTRDQRPAVLV-SAIRHYQPSSC 245

Query: 500 --FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F +      S++E   S   ++  +HG +   D++ V+  F N +C++L+AT V   G
Sbjct: 246 VVFCNTKRDCQSVYEALESRGINVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
           +D+ +  +++  N E     ++H  R GR GR    G+ IS C
Sbjct: 306 LDIKELELVV--NYELAFDPEVHVHRIGRTGRAGLSGKAISLC 346


>gi|294851527|ref|ZP_06792200.1| ATP-dependent RNA helicase DeaD [Brucella sp. NVSL 07-0026]
 gi|294820116|gb|EFG37115.1| ATP-dependent RNA helicase DeaD [Brucella sp. NVSL 07-0026]
          Length = 626

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 42/330 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     +HI++GT    +D I        Q   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GSHIVVGTPGRLRDHITRNALDMSQLRAIVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD----IDISKITEKP 452
            DE    G ++ L+  L +       L+ +AT P P   +     +    I +   T + 
Sbjct: 157 ADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQH 216

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    +   + P  R   +I  L  +  + + +   C         + R  V+   S   
Sbjct: 217 ADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRLS 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 266 NRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
              LH+  GR GR     +C+L+   P S+
Sbjct: 326 DTLLHR-SGRTGRAGRKGTCVLVV--PFSR 352


>gi|255524805|ref|ZP_05391755.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|296188658|ref|ZP_06857046.1| ATP-dependent RNA helicase DbpA [Clostridium carboxidivorans P7]
 gi|255511472|gb|EET87762.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|296046922|gb|EFG86368.1| ATP-dependent RNA helicase DbpA [Clostridium carboxidivorans P7]
          Length = 480

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 156/400 (39%), Gaps = 66/400 (16%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--- 319
           K ++NI +  P+K Q+  I  ILQ          I++   GSGKT    I +   +E   
Sbjct: 17  KSIKNIGYKKPSKVQQQVIPLILQGKDV------IVKSQTGSGKTAAFAIPICEHMEIEE 70

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              QA+I+ P   LA Q  E I    +  +I    I G  P   ++K L++    + HII
Sbjct: 71  NDAQALILTPTRELAVQIKEDISNIGRFKRIRCSAIFGKQPMDTQKKELKQ----RVHII 126

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           +GT     D I+           LIL   DE    G  + +            ++   P+
Sbjct: 127 VGTPGRTLDHIKRGNMNLQNIKFLILDEADEMLNMGFIEEVSE----------IIENIPV 176

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK------- 484
            R  +L S    +  +   K   + P K  I P     + IE+   ++ E  K       
Sbjct: 177 SRQNMLFSATMPEAIENLSKKYMKNPAKVEITPEKLTVDNIEQKCYIIEENNKFSLLRNL 236

Query: 485 --------AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
                   A   C     + ++N   V  R  +  E +  S   IHG M   ++   M+S
Sbjct: 237 LYIENPDTAIVFC-----RTKNNVDYVTSRMKA--EKY--SCDKIHGGMLQNERLDTMNS 287

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G  + LIAT V   GID+ + + +I  +      + +H++ GR GR     + I   
Sbjct: 288 FKMGEFRFLIATDVAARGIDIDNVTHVINYDLPMEKESYIHRI-GRTGRAGNKGTAITFS 346

Query: 597 HPPLSK-----NSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
            P   +       Y ++ + K      L  E+D  Q KE 
Sbjct: 347 TPNEDRFLSEIEDYIQMEIPKCE----LPTEKDANQNKEA 382


>gi|241204840|ref|YP_002975936.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858730|gb|ACS56397.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 521

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 151/363 (41%), Gaps = 50/363 (13%)

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++QK+L  +  +    PT  Q  AI   L+    +  +  I Q   G+GKT   ++ M +
Sbjct: 15  LSQKVLSAVTDAGYTIPTPIQAGAIPFALE----RRDICGIAQ--TGTGKTASFVLPMLS 68

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q  E  +KY +N ++ V ++ G +    + + LER
Sbjct: 69  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER 128

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-L 424
                A ++I T     D  +  KL++     +++DE  R        +      P +  
Sbjct: 129 ----GADVLICTPGRLLDHFERGKLLMSGVEILVIDEADR--------MLDMGFIPDIER 176

Query: 425 LMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           +    P  R TL  ++    +I K+ ++         V  P +  + V +R   V S GK
Sbjct: 177 IAKMIPFTRQTLFFSATMPSEIQKLADRFLQNPERIEVAKPASAAETVTQRF--VASHGK 234

Query: 484 K-------AYWICPQIEEKKESNF----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
                      +  Q E K    F    + V + F SL  H   S+  +HG M    +  
Sbjct: 235 DYEKRAVLRELVRAQTELKNAIVFCNRKKDVADLFRSLERH-GFSVGALHGDMDQRSRTM 293

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            + SF++G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR     + 
Sbjct: 294 TLQSFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRI-GRTGRAGRSGAA 352

Query: 593 ILL 595
             L
Sbjct: 353 FTL 355


>gi|255719590|ref|XP_002556075.1| KLTH0H04466p [Lachancea thermotolerans]
 gi|238942041|emb|CAR30213.1| KLTH0H04466p [Lachancea thermotolerans]
          Length = 553

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 37/290 (12%)

Query: 300 GDVGSGKTL------VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + GSGKT       +  +  A A   G Q ++++P   LA Q Y+ +   T+   +   
Sbjct: 185 AETGSGKTFAFGVPAIHNLKTADAKSQGVQVLVISPTRELASQIYDNLILLTKKAGVNCC 244

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
            + G +P+  +R  L++     + +++ T     D     S +   +  +++DE  R   
Sbjct: 245 CVYGGVPKDEQRSQLKK-----SQVVVATPGRLLDLIEEGSARLSNVKYLVLDEADRMLE 299

Query: 407 -GVQQRLKL---TQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRK 456
            G ++ +K    + KAT    L+ TAT  P+ +       + S   I I    E  A ++
Sbjct: 300 KGFEEDIKRIIGSTKATGRQTLMFTAT-WPKEVRELANTFMDSPVKISIGNRDELSANKR 358

Query: 457 --PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
              I  VI P  +  +++E LK   S  +K   +      KKE+   + VER N  +  +
Sbjct: 359 ITQIVEVIDPFKKDRKLLELLKKYQSGARKNDKVLIFALYKKEA---ARVER-NLKYNGY 414

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             ++A IHG +S   +   ++ FK+G   +L+AT V   G+D+ +   +I
Sbjct: 415 --NVAAIHGDLSQQQRTQALNEFKSGESNMLLATDVAARGLDIPNVKTVI 462


>gi|3986285|dbj|BAA34993.1| DjVLGA [Dugesia japonica]
          Length = 726

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 104/460 (22%), Positives = 191/460 (41%), Gaps = 88/460 (19%)

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
           +     + +F SIAEA            ++   P   RL   EL  GQ + +     F +
Sbjct: 146 DDSFYSRSNFSSIAEA-----------SWDAQQPQNLRLE-KELFIGQNSGI----NFDQ 189

Query: 250 EIGIPINVEG-----------------KIAQKILRNIPFS----PTKSQESAIKDILQDM 288
              IP+N  G                 K+   +  NI  +    PT  Q  A+  I+Q  
Sbjct: 190 YDNIPVNTTGPQWSHDGYTGVTSFLELKLHPIVSHNISLTQYTRPTPVQRYAVPIIMQ-- 247

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---------------AVIMAPIGIL 333
             +  ++   Q   GSGKT   LI + + +   G                A+I+AP   L
Sbjct: 248 --RRDLMACAQ--TGSGKTAAFLIPLLSMMYQDGPGNSLSHSGYKKEYPVALILAPTREL 303

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A Q Y+  +K++  + +   ++ G       R  L+ I+ G  ++++ T     D ++  
Sbjct: 304 AVQIYDEARKFSYRSLVRPCVVYGGR---DIRGQLQDISQG-CNMLVATPGRLSDMLERC 359

Query: 394 KLIL-----VIVDEQHRF---GVQQRL-KLTQKATAP-----HVLLMTATPIPRTLVLTS 439
           K+ L     +++DE  R    G + ++ K+ ++   P       L+ +AT  PR + + +
Sbjct: 360 KIGLDCIRYLVLDEADRMLDMGFEPQIRKIVEQTNMPPPGQRQTLMFSAT-FPREIQMLA 418

Query: 440 ---LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              L D    ++ +  +  + I   I+ ++  +E  + L  +L++      I   +E K+
Sbjct: 419 SDFLKDYLFLRVGKVGSTSQNITQRIVYVDE-NEKRDHLLDILTDIDSDSLILVFVETKR 477

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            ++    +E F  LH    S +A IHG  S  D+E  + SF+ G+  +L+AT V   G+D
Sbjct: 478 GAD---ALEGF--LHTE-GSCVASIHGDRSQSDRELALQSFREGSTPILVATRVAARGLD 531

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           + +   +I  +        +H++ GR GR   +   I  Y
Sbjct: 532 IPNVKFVINYDLPTDIEEYVHRI-GRTGRVGNLGEAISFY 570


>gi|254713301|ref|ZP_05175112.1| DEAD-box ATP dependent DNA helicase [Brucella ceti M644/93/1]
 gi|254716345|ref|ZP_05178156.1| DEAD-box ATP dependent DNA helicase [Brucella ceti M13/05/1]
 gi|261218127|ref|ZP_05932408.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261321026|ref|ZP_05960223.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|260923216|gb|EEX89784.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261293716|gb|EEX97212.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
          Length = 626

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 42/330 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     +HI++GT    +D I        Q   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GSHIVVGTPGRLRDHITRNALDMSQLRAIVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD----IDISKITEKP 452
            DE    G ++ L+  L +       L+ +AT P P   +     +    I +   T + 
Sbjct: 157 ADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQH 216

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    +   + P  R   +I  L  +  + + +   C         + R  V+   S   
Sbjct: 217 ADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRLS 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 266 NRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
              LH+  GR GR     +C+L+   P S+
Sbjct: 326 DTLLHR-SGRTGRAGRKGTCVLVV--PFSR 352


>gi|320540013|ref|ZP_08039670.1| putative ATP-dependent RNA helicase, specific for 23S rRNA
           [Serratia symbiotica str. Tucson]
 gi|320029936|gb|EFW11958.1| putative ATP-dependent RNA helicase, specific for 23S rRNA
           [Serratia symbiotica str. Tucson]
          Length = 461

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 144/315 (45%), Gaps = 44/315 (13%)

Query: 303 GSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKK---YTQNTQIIVEIIT 356
           GSGKT    I +   +       QA+I+ P   LA Q  + +++   +TQN +I+   + 
Sbjct: 51  GSGKTAAFGIGVLDNINVALVSTQALILCPTRELADQMSKELRRLARFTQNIKILT--LC 108

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQR 411
           G  P   +   L+ + H   HI++GT     + ++   L+L     +++DE  R      
Sbjct: 109 GGQPLGPQ---LDSLVHA-PHIVVGTPGRILEHLRKKTLVLEMLKVLVLDEADRM----- 159

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE- 470
           L +        V+  T  P  +TL+ ++    DI +I+ +   R+P+K   I ++  DE 
Sbjct: 160 LDMGFADDIDEVISETP-PQRQTLLFSATYPADIERISAR-VQREPLK---IEVDNGDEQ 214

Query: 471 -VIERLKVVLSEGKKAYWICPQIEEKKESNF-------RSVVERFNSLHEHFTSSIAIIH 522
             IE+     +  ++A  +   I   + ++        R     F +L E +  S+  +H
Sbjct: 215 TTIEQRFYETTANQRAALLVSVIRHYQPASCVVFCNTKRDCQTVFEAL-EAYGISVLALH 273

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-G 581
           G +   +++ V+  F N +C++L+AT V   G+D+ +  +++  N E     Q+H  R G
Sbjct: 274 GDLEQRERDQVLVRFTNRSCRVLVATDVAARGLDITELELVV--NYELAFDPQVHVHRIG 331

Query: 582 RVGR----GEEISSC 592
           R GR    G  IS C
Sbjct: 332 RTGRAGRHGLAISLC 346


>gi|254690433|ref|ZP_05153687.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus bv. 6
           str. 870]
 gi|256258685|ref|ZP_05464221.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus bv. 9
           str. C68]
 gi|260755981|ref|ZP_05868329.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260885002|ref|ZP_05896616.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|297247521|ref|ZP_06931239.1| ATP-dependent RNA helicase DeaD [Brucella abortus bv. 5 str. B3196]
 gi|260676089|gb|EEX62910.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260874530|gb|EEX81599.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|297174690|gb|EFH34037.1| ATP-dependent RNA helicase DeaD [Brucella abortus bv. 5 str. B3196]
          Length = 626

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 42/330 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     +HI++GT    +D I        Q   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GSHIVVGTPGRLRDHITRNALDMSQLRAIVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD----IDISKITEKP 452
            DE    G ++ L+  L +       L+ +AT P P   +     +    I +   T + 
Sbjct: 157 ADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQH 216

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    +   + P  R   +I  L  +  + + +   C         + R  V+   S   
Sbjct: 217 ADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRLS 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 266 NRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
              LH+  GR GR     +C+L+   P S+
Sbjct: 326 DTLLHR-SGRTGRAGRKGTCVLVV--PFSR 352


>gi|17988107|ref|NP_540741.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str.
           16M]
 gi|256045915|ref|ZP_05448789.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260563201|ref|ZP_05833687.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|265992328|ref|ZP_06104885.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|17983860|gb|AAL53005.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str.
           16M]
 gi|260153217|gb|EEW88309.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|263003394|gb|EEZ15687.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
          Length = 626

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 42/330 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     +HI++GT    +D I        Q   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GSHIVVGTPGRLRDHITRNALDMSQLRAIVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD----IDISKITEKP 452
            DE    G ++ L+  L +       L+ +AT P P   +     +    I +   T + 
Sbjct: 157 ADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQH 216

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    +   + P  R   +I  L  +  + + +   C         + R  V+   S   
Sbjct: 217 ADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRLS 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 266 NRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
              LH+  GR GR     +C+L+   P S+
Sbjct: 326 DTLLHR-SGRTGRAGRKGTCVLVV--PFSR 352


>gi|329926082|ref|ZP_08280693.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
 gi|328939480|gb|EGG35833.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
          Length = 506

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 131/295 (44%), Gaps = 47/295 (15%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A++++P   LA Q  + +K Y+Q T++    I G + Q  + +AL++     A I+I T
Sbjct: 77  RALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERALQQ----GADILIAT 132

Query: 383 HA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTAT-PI 431
                  + Q  +    + ++++DE  R    G    +K  + +  +    L  +AT P 
Sbjct: 133 PGRLLDLMNQKHVDLQHVEILVLDEADRMLDMGFIHDVKRIIAKMPSKKQTLFFSATMPA 192

Query: 432 PRT-LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             T LV T L +              P+K  I P++   E IE+   +L  G K   +  
Sbjct: 193 EITQLVQTLLHN--------------PVKVEITPVSSTAERIEQSVYLLETGNKQQQLN- 237

Query: 491 QIEEKKESNFRSVV---------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
             E  K+S+  S +         +R          +   IHG  S   +++ +++FK+G 
Sbjct: 238 --ELMKDSSIVSALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGA 295

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
            ++L+AT +   GID+ + S +I  N  +     +H++ GR GR    G  IS C
Sbjct: 296 TRVLVATDIAARGIDIDELSHVINFNLPNIPETYVHRI-GRTGRAGLSGTAISFC 349


>gi|226428974|gb|ACO55107.1| transcription-repair coupling factor [Allochromatium minutissimum]
          Length = 74

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 43/67 (64%)

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++  L+ +A G   I++GTH L Q +I++  L L I+DE+HRFGV+ + +L    +   V
Sbjct: 8   QKAVLDGLAEGTVDIVVGTHKLLQPTIRFKNLGLAIIDEEHRFGVRHKEQLKNLRSEVDV 67

Query: 424 LLMTATP 430
           L +TATP
Sbjct: 68  LTLTATP 74


>gi|223462261|gb|AAI50863.1| Ddx3x protein [Mus musculus]
          Length = 661

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 170/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + A G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGAEIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 413

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  ID+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 414 NITQKVVWVEEIDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 466

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|218462794|ref|ZP_03502885.1| ATP dependent RNA helicase protein [Rhizobium etli Kim 5]
          Length = 398

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 151/361 (41%), Gaps = 46/361 (12%)

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++QK+L  +  +    PT  Q  AI   L+    +  +  I Q   G+GKT   ++ M +
Sbjct: 9   LSQKVLSAVTDAGYTIPTPIQAGAIPFALE----RRDICGIAQ--TGTGKTASFVLPMLS 62

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q  E  +KY +N ++ V ++ G +    + + LER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER 122

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKA 418
                A ++I T     D  +  KL++     +++DE  R         +++  KL    
Sbjct: 123 ----GADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFT 178

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIER 474
                   T  P  + L    L + +  ++ +  +  K +    +  +  D     V+  
Sbjct: 179 RQTLFFSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRE 238

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L    +E K A   C     KK+     V + F SL  H   S+  +HG M    +  ++
Sbjct: 239 LVRAQTELKNAIIFC---NRKKD-----VADLFRSLERH-GFSVGALHGDMDQRSRTMML 289

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            SF++G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR     +   
Sbjct: 290 QSFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRI-GRTGRAGRSGAAFT 348

Query: 595 L 595
           L
Sbjct: 349 L 349


>gi|218133744|ref|ZP_03462548.1| hypothetical protein BACPEC_01613 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991119|gb|EEC57125.1| hypothetical protein BACPEC_01613 [Bacteroides pectinophilus ATCC
           43243]
          Length = 98

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 46/82 (56%)

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           K +  RL +L+ + DGF IAEEDLK R  G+  GI+QSG  +F I       +LL+ A  
Sbjct: 4   KENMDRLGILRESNDGFRIAEEDLKLRGPGDFFGIRQSGDMQFTIGDIYKDANLLKAASD 63

Query: 662 DAKHILTQDPDLTSVRGQSIRI 683
            A  I+  DPDL +     +R+
Sbjct: 64  AAAAIIENDPDLENDANAGLRM 85


>gi|71734717|ref|YP_272808.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555270|gb|AAZ34481.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 479

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 187/428 (43%), Gaps = 57/428 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  ++   I V
Sbjct: 65  IAQAKTGSGKTAAFGIGLLNPINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKV 124

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 125 LTLCGGVSFGPQIGSLE---HG-AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRM- 179

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++   + I +++ K   R P +TV +   
Sbjct: 180 ------LDMGFYDAIADIIEQTPQRRQTLLFSATYPVGIKQLSSKFM-RDP-QTVKVEAL 231

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAI 520
             D  I+++   +S  ++   +   +   + ++   F    ++   + +H T+   S   
Sbjct: 232 HADSQIDQIFYEISPEQRLEAVVKVLGHFRPASCVAFCFTKQQVQEVVDHLTAKGMSAVG 291

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++ V+  F N +  +L+AT V   G+D +DA  ++I N E    +++H  R
Sbjct: 292 LHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVI-NVELARDSEIHIHR 349

Query: 581 -GRVGRGEEISSCILLYHP---------------PLSKNSYTRLSV-----LKNTEDGFL 619
            GR GR  E    + L  P               PL+   Y +LS+     L  T     
Sbjct: 350 VGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQQYDQLSIKEGGKLLPTMTTLC 409

Query: 620 IAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAKHILTQDPDLTS 675
           I      + + G+ILG    ++G+    + +  + D  + + + R  AK  L +  +   
Sbjct: 410 IGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALERLNN-GK 468

Query: 676 VRGQSIRI 683
           ++G+S+R+
Sbjct: 469 IKGKSLRV 476


>gi|303316314|ref|XP_003068159.1| ATP-dependent RNA helicase DBP3, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240107840|gb|EER26014.1| ATP-dependent RNA helicase DBP3, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 512

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 135/327 (41%), Gaps = 45/327 (13%)

Query: 300 GDVGSGKTLV-ALIAMAAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   L  +   +E           A+I+ P   LA Q Y+ + +++    + 
Sbjct: 140 AETGSGKTLAFGLPCLRRVLELNNSETSCKPCALIITPTRELAVQIYDQLLRFSSAVDVG 199

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
           +  I G  P+ H+R+ +       A ++I T    +D     +I    +  +++DE  R 
Sbjct: 200 IACIYGGSPKDHQRREIR-----NASVVIATPGRLKDFQADQTINLSGVKYLVLDEADRM 254

Query: 407 -----------------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                              Q+R  +   AT P  +   A    +  V  ++GD    +  
Sbjct: 255 LDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAASFTKNPVTVTIGDSSDIRAN 314

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           ++    K I  V+ P  +   ++E L+      K  + I      KKE+     VERF  
Sbjct: 315 KRI---KQIVEVLQPYEKDSRLLELLRRYQDGAKNNHRILVFCLYKKEA---MRVERFIG 368

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
             + F   +A IHG MS  ++   +++FK+G+  LL+AT V   G+D+    +++     
Sbjct: 369 -SKGF--KVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKLVLNVTFP 425

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY 596
                 +H++ GR GR       I L+
Sbjct: 426 LTIEDYVHRI-GRTGRAGAEGLAITLF 451


>gi|194290299|ref|YP_002006206.1| dead box ATP-dependent RNA helicase with p-loop hydrolase domain
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224134|emb|CAQ70143.1| DEAD box ATP-dependent RNA helicase with P-loop hydrolase domain
           [Cupriavidus taiwanensis LMG 19424]
          Length = 511

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 126/292 (43%), Gaps = 29/292 (9%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LA Q Y+ + +Y ++T +   ++ G +    +  AL R       I++ T
Sbjct: 108 RALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRR----GVEILVAT 163

Query: 383 HALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLV 436
                    Q S+   ++ ++++DE  R      L   Q+       ++   P  R TL+
Sbjct: 164 PGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQR-------IINLLPAQRQTLL 216

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I ++      ++P+   +   N  +E + +    + +G K   +   ++++ 
Sbjct: 217 FSATFSPEIKRLASS-YLKQPVTIEVARSNSTNENVRQAVYQVEDGHKQAAVVHLLKQRA 275

Query: 497 E-SNFRSVVERFNS------LHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E S  R  +   NS      L  H      + A IHG  +  ++   +D FK+GT   L+
Sbjct: 276 EQSQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKSGTIDALV 335

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT V   G+D+ D   +I  +  +     +H++ GR GR       + +Y P
Sbjct: 336 ATDVAARGLDIPDMPCVINFDLPYSAEDYVHRI-GRTGRAGASGDALSIYVP 386


>gi|49474271|ref|YP_032313.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse]
 gi|49239775|emb|CAF26165.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse]
          Length = 467

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 140/340 (41%), Gaps = 47/340 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q   I  +LQ    +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 28  APTPIQSGTIPYVLQ----RKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 81

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +   H+ + LER     A ++I T   
Sbjct: 82  ILEPTRELAAQVEENFDKYGINHRLNVALLIGGVSFEHQDRKLER----GADVLIATPGR 137

Query: 386 FQDSIQYYKLILV-----IVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPR 433
             D  +  KL+L+     ++DE  R         +++  KLT        L  +AT  P 
Sbjct: 138 LLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLT--PFTRQTLFFSATMAPE 195

Query: 434 TLVLTS--LGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEG---KKAY 486
              LT   L      ++T+  +    I   ++       D+     +++ +EG   K A 
Sbjct: 196 ITKLTKQFLHFPVTVEVTKASSTATTITQQLVKSGNKSWDKRAVLRELIHNEGDELKNAI 255

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C        +  R + E F SL  H   S+  +HG M    + S +  FK+    LL+
Sbjct: 256 IFC--------NRKRDISELFRSLVRH-NFSVGALHGDMDQYSRMSTLADFKDNKLTLLV 306

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           A+ V   G+D+   S +   +        +H++ GR GR 
Sbjct: 307 ASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRI-GRTGRA 345


>gi|313224968|emb|CBY20760.1| unnamed protein product [Oikopleura dioica]
          Length = 735

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 38/319 (11%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKTL  L  + A    G      +I+AP   LA Q  E + +   N + +  ++   
Sbjct: 355 TGSGKTLAFLAPLVAHCLYGAGEPMGLIIAPTRELANQIKEQVDQVFDNKRPMTTMLA-- 412

Query: 359 MPQAHRRKALERIAHGQA-HIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRL 412
           +    RR+ + R+  G    I+IGT     D      ++ +K   V++DE  +      L
Sbjct: 413 VGGTDRREDITRLQDGSPPTIVIGTPGRLMDLSDMGELKLHKCTYVVLDEADKM-----L 467

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTS-LGDIDISKITEKPAGR-----------KPIKT 460
               +     ++  +  P  R +++TS    ++I K  ++   +             +KT
Sbjct: 468 DQGFRGDIEKLIDQSNIPKKRQIIMTSATWPVEIQKFAKQYMSKALKIIVGKFDLTCVKT 527

Query: 461 VI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           V+   I +   +E    L  V+    K    C      ++    +V ++    +  F+  
Sbjct: 528 VVQSVIKVGNDNEKFRELYEVIKRDWKLMVFC-----GRKDTVDAVYDQLRRTYRKFSKV 582

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  +HG     D+   +   KNG  ++++ T V   GIDV D + +   +         H
Sbjct: 583 IGSMHGDYEQHDRTKALKKLKNGQTQVMVCTDVAARGIDVKDITHVFSYDLAVNIDDHCH 642

Query: 578 QLRGRVGR-GEEISSCILL 595
           ++ GR GR G    +C L 
Sbjct: 643 RI-GRTGRAGRHGKACTLF 660


>gi|310756760|gb|ADP20521.1| ATP-dependent RNA helicase DDX3X [Fukomys anselli]
          Length = 662

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 170/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 413

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  ID+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 414 NITQKVVWVEEIDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LFHEGY-- 466

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|302422048|ref|XP_003008854.1| ATP-dependent RNA helicase DBP5 [Verticillium albo-atrum VaMs.102]
 gi|261352000|gb|EEY14428.1| ATP-dependent RNA helicase DBP5 [Verticillium albo-atrum VaMs.102]
          Length = 485

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 171/414 (41%), Gaps = 84/414 (20%)

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           + L   K FK+     +N+   I + +L    F P+K QE A+  +LQ+  +      I 
Sbjct: 51  STLYSAKTFKE-----MNLSEPILKGLLNLNYFKPSKIQEKALPLMLQNPPRH----MIA 101

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           Q   G+GKT   ++ + + ++       QA+++AP   LA+Q    I K       I   
Sbjct: 102 QSQSGTGKTAAFVVTILSRIDLSQPNQPQALVLAPSRELARQIEGVINK-------IGNF 154

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQ 409
             G    A    ALER A  QA++I+GT     D      +   +L L+++DE      Q
Sbjct: 155 CEGLKVAAALPGALERGAPVQANVIVGTPGTVMDITRRRQLDVSQLRLLVIDEADSMLDQ 214

Query: 410 QRLK---LTQKATAP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPA-GRKPIKTVI 462
           Q L    +  K+T P    +LL +AT  P  ++             EK A G   I+   
Sbjct: 215 QGLGDQCVRVKSTLPRNIQILLFSAT-FPDKVM----------GFAEKFAQGADQIR--- 260

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR---------SVV-----ERFN 508
                    ++  ++ +S   + Y  C   + K E+  +         SV+     E  N
Sbjct: 261 ---------LKHTELTVSGISQMYIDCDSEDSKYENLVKLYGLMTIGSSVIFVRTRESAN 311

Query: 509 SLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            + +   +    +A +HG     D++ +++ F++G  K+L+ T V+  GIDV   S++I 
Sbjct: 312 EIQKRMEADGHRVAALHGAFDGNDRDRLLEEFRSGRSKVLLTTNVLARGIDVSSVSMVIN 371

Query: 566 ENAEHFGLAQ--------LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            +    G           LH++ GR GR   I   I        K S+  LS +
Sbjct: 372 YDIPMKGRGDTEPDPETYLHRI-GRTGRFGRIGVSISFVS---DKKSFQALSAI 421


>gi|256112630|ref|ZP_05453551.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 3 str.
           Ether]
 gi|265994071|ref|ZP_06106628.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|262765052|gb|EEZ10973.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 626

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 42/330 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     +HI++GT    +D I        Q   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GSHIVVGTPGRLRDHITRNALDMSQLRAIVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD----IDISKITEKP 452
            DE    G ++ L+  L +       L+ +AT P P   +     +    I +   T + 
Sbjct: 157 ADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQH 216

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    +   + P  R   +I  L  +  + + +   C         + R  V+   S   
Sbjct: 217 ADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRLS 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 266 NRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
              LH+  GR GR     +C+L+   P S+
Sbjct: 326 DTLLHR-SGRTGRAGRKGTCVLVV--PFSR 352


>gi|84501639|ref|ZP_00999811.1| primosomal protein N' [Oceanicola batsensis HTCC2597]
 gi|84390260|gb|EAQ02819.1| primosomal protein N' [Oceanicola batsensis HTCC2597]
          Length = 731

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 98/220 (44%), Gaps = 34/220 (15%)

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
           LQD      +LR   G  GSGKT V L A+AA + AG QA+++ P   L++Q   F+ + 
Sbjct: 212 LQDGGYGTTLLR---GVTGSGKTEVYLEAVAACLAAGRQALVLLPEIALSEQ---FLVRV 265

Query: 345 TQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDE 402
            Q      VE  +G +    RR+A + +  GQA +++G   ALF   + +  L L++VDE
Sbjct: 266 EQRFGAKPVEWHSG-VTMTERRRAWKMVGQGQAELVVGARSALF---LPFRDLGLIVVDE 321

Query: 403 QHRFGVQQRLKLTQKA----------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           +H    +Q   +   A              V+L +ATP      L +  + D  K     
Sbjct: 322 EHDTSYKQEDGVLYNARDMAVLRASIAGARVVLASATP-----SLETWANADAGKYDRLD 376

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            G +    V+  +  ID   ER+       +   WI P +
Sbjct: 377 LGARYGAAVLPEMRAIDMRAERI-------EPGRWISPAL 409


>gi|332976423|gb|EGK13271.1| primosome assembly protein PriA [Desmospora sp. 8437]
          Length = 818

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 24/226 (10%)

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L+R+  K+E   P        +   R  P   T  Q+ A + IL+ +        +L G 
Sbjct: 250 LLRRMEKEEFRDPFG-----GRSFARTQPLPLTPEQDQAFQSILRPLQAGEHRTLLLHGV 304

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGKT + L A+   + +G QA+++ P I +  Q    F  ++       V ++   + 
Sbjct: 305 TGSGKTEIYLQAITETLNSGRQAIVLVPEISLTPQMVRRFKGRFGDE----VAVLHSGLS 360

Query: 361 QAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH----------RFGVQ 409
           +  R     +I  G   + IG   A+F     + +L LV++DE+H          R+  +
Sbjct: 361 KGERFDEWRKIRSGDVRVAIGARSAIF---APFPRLGLVVIDEEHESSYKQEEQPRYHAR 417

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
           +  +   +     ++L TATP   +      G  +   + E+  GR
Sbjct: 418 EVARWRCREHGAVLVLGTATPSVESYFWARTGRFEWVTLNERVLGR 463


>gi|270262252|ref|ZP_06190524.1| hypothetical protein SOD_b04600 [Serratia odorifera 4Rx13]
 gi|270044128|gb|EFA17220.1| hypothetical protein SOD_b04600 [Serratia odorifera 4Rx13]
          Length = 460

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 151/343 (44%), Gaps = 48/343 (13%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           T  Q +A+  IL  QD+  K +         GSGKT    + L+      +   QA+I+ 
Sbjct: 28  TPVQAAALPAILKGQDVRAKAK--------TGSGKTAAFGIGLLDKINVSQVAAQALILC 79

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q       + ++TQN +I+   + G  P   +   L+ + H   HI++GT   
Sbjct: 80  PTRELADQVSKELRRLARFTQNIKILT--LCGGQPMGPQ---LDSLVHA-PHIVVGTPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            Q+ ++   L+L     +++DE  R      L +        V+  T  P  +TL+ ++ 
Sbjct: 134 IQEHLRKKTLVLDELKVLVLDEADRM-----LDMGFADDIDDVISYT-PPQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
               I +I+ +   R P+   +   +    + +R      + + A  +   I   + S+ 
Sbjct: 188 YPSGIERISAR-VQRDPLNVEVDDGDDQTSIEQRFYETTRDQRPAVLV-SAIRHYQPSSC 245

Query: 500 --FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F +      S++E   +   S++ +HG +   D++ V+  F N +C++L+AT V   G
Sbjct: 246 VVFCNTKRDCQSVYEALEARGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
           +D+ +  +++  N E     ++H  R GR GR    G  IS C
Sbjct: 306 LDIKELELVV--NYELAFDPEVHVHRIGRTGRAGLNGLAISLC 346


>gi|156839635|ref|XP_001643506.1| hypothetical protein Kpol_473p7 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114120|gb|EDO15648.1| hypothetical protein Kpol_473p7 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 478

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 160/369 (43%), Gaps = 57/369 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+K QE A+  +L +  +      I Q   G+GKT    + M   V+      QA+ +AP
Sbjct: 111 PSKIQERALPLLLSNPPRN----MIAQSQSGTGKTAAFSLTMLTRVDPTKDVTQAICLAP 166

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E I++  + T+I  ++I   +P ++     ER     A+I++ T     D 
Sbjct: 167 SRELARQTLEVIQEMGKFTKITSQLI---VPDSY-----ERNKPVTANIVVATPGTVLDL 218

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT--LVLTSLGDIDISK 447
           ++     L+IV+    + + +   +  K       +     +P+T  LVL S        
Sbjct: 219 MRRK---LLIVNHVKIYVLDEADNMLDKQGLGDQCIRVKKFLPKTAQLVLFS-------- 267

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---------- 497
            T   A R+  K V+   N ++  ++R +V ++  K+ Y  C   + K E          
Sbjct: 268 ATFDDAVREYAKKVVPNANTLE--LQRNEVNVAAIKQLYMDCNNEDHKYEVLCELYGLLT 325

Query: 498 --SN--FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             S+  F S  +  N L+         ++I+HG +   +++ ++D F+ G  K+LI T V
Sbjct: 326 IGSSIIFVSTKKTANLLYAKLKQEGHQVSILHGDLQSTERDRLIDDFREGRSKVLITTNV 385

Query: 551 IEVGIDVVDASIIIIE------NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           +  GID+   S+++        N +      +H++ GR GR       I   H    K S
Sbjct: 386 LARGIDIPTVSMVVNYDLPTSLNGQADPATYIHRI-GRTGRFGRKGVAISFVH---DKKS 441

Query: 605 YTRLSVLKN 613
           Y  LS +K+
Sbjct: 442 YQVLSNIKD 450


>gi|306844397|ref|ZP_07476987.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
 gi|306275210|gb|EFM56960.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
          Length = 626

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 42/330 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     +HI++GT    +D I        Q   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GSHIVVGTPGRLRDHITRNALDMSQLRAIVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD----IDISKITEKP 452
            DE    G ++ L+  L +       L+ +AT P P   +     +    I +   T + 
Sbjct: 157 ADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQH 216

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    +   + P  R   +I  L  +  + + +   C         + R  V+   S   
Sbjct: 217 ADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRLS 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 266 NRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
              LH+  GR GR     +C+L+   P S+
Sbjct: 326 DTLLHR-SGRTGRAGRKGTCVLVV--PFSR 352


>gi|198463474|ref|XP_002135506.1| GA28589 [Drosophila pseudoobscura pseudoobscura]
 gi|198151271|gb|EDY74133.1| GA28589 [Drosophila pseudoobscura pseudoobscura]
          Length = 799

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 141/324 (43%), Gaps = 47/324 (14%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  NT +   
Sbjct: 188 TGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNT 247

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I+I T     D ++     L     +++DE  R   
Sbjct: 248 CIFGGAPKGQQARDLER----GVEIVIATPGRLIDFLERGTTTLKRCTYLVLDEADRMLD 303

Query: 407 -GVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            G + ++ K+ Q+      +LM +   P+ +       LT+   ++I  +T   A    +
Sbjct: 304 MGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLTNYIQVNIGSLTLS-ANHNIL 362

Query: 459 KTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           + V +     ++ ++I+ L  + +E +    I   +E KK      V E   ++      
Sbjct: 363 QIVDVCDESEKLGKLIKLLSDISAENETKTIIF--VETKKR-----VDEITRNISRQGWR 415

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHFG 572
           + AI HG  S  +++ V+ SF+NG   +L+AT V   G+DV D   +I      N+E + 
Sbjct: 416 ACAI-HGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDY- 473

Query: 573 LAQLHQLRGRVGRGEEISSCILLY 596
              +H++ GR GR     +   L+
Sbjct: 474 ---VHRI-GRTGRSNNTGTAYTLF 493


>gi|195589286|ref|XP_002084383.1| GD12861 [Drosophila simulans]
 gi|194196392|gb|EDX09968.1| GD12861 [Drosophila simulans]
          Length = 690

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 157/351 (44%), Gaps = 59/351 (16%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQ 323
           RN   +PTK Q +AI   L +M        I+Q   G+GKTL+ +IA+  + +       
Sbjct: 42  RNNFVTPTKIQAAAIPMALANMD------LIIQSKSGTGKTLIYVIAVVQSFQPNMNRPH 95

Query: 324 AVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           A+I+ P   LA Q    F++              G    A  R  +      ++ +IIGT
Sbjct: 96  AMIVVPTRELAIQVQDTFVQLCKSFRDFKCSAFIGGTEVAKDRSRM-----NESRVIIGT 150

Query: 383 HA----LFQDSI-QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL--LMTATPIPRTL 435
                 L+++ +    KL L+++DE          +L Q  +  H +  L+ A P  R +
Sbjct: 151 PGRLLHLYENRVLDVSKLRLLVLDEAD--------QLYQTKSLQHTVSKLIEAMPKNRQI 202

Query: 436 VLTSLG---DID--ISKITEKPA--GRKPIKTVIIPI-----------NRIDEVIERLKV 477
           +  S     D+D  ++K+ +KP         TV++ I           N ++E+  +L++
Sbjct: 203 IACSATYDQDLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRLKLQI 262

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534
           +   G+    I  Q+  ++   F S   R +S   + T+S     +I G M   ++  V 
Sbjct: 263 L---GQ----IFSQLPYEQAIIFASSQMRADSYKNYLTASGVDCHLISGAMEQSERLHVF 315

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           + ++N T ++L+AT ++  G+D   A+++I  +     +  LH++ GR GR
Sbjct: 316 EGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRI-GRAGR 365


>gi|199598083|ref|ZP_03211506.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|258507759|ref|YP_003170510.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|199591009|gb|EDY99092.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|257147686|emb|CAR86659.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|259649106|dbj|BAI41268.1| ATP-dependent DNA and RNA helicase [Lactobacillus rhamnosus GG]
          Length = 448

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 130/317 (41%), Gaps = 30/317 (9%)

Query: 299 QGDVGSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-VEI 354
           Q   GSGKT   LV L+++    E   Q VI AP   LA Q Y   ++ TQ    I +  
Sbjct: 46  QSQTGSGKTHAFLVPLLSLVDPNEDATQVVITAPSRELANQIYAVAQQLTQTEPAIRISR 105

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           + G M    ++K ++++   Q H+ IGT     D I+ Y L+   V    R  V     +
Sbjct: 106 LVGGM---DKQKQIDKLQAHQPHVAIGTPGRILDMIKRYDLVPASV----RHFVVDEADM 158

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDE 470
           T        +   A+  P  L +         K+  +P  RK    P    + P + I +
Sbjct: 159 TLDMGFLETVDAIASSFPEHLQMAVFSATIPQKL--EPFLRKYMDHPTVIELKPQSVIAD 216

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGR 524
            +E + + +    K   I   +           +N ++ V+  +   +H    +A IHG 
Sbjct: 217 TVENILIAVKGRDKNELIYQLVTMGHPFLVLIFANTKTSVDAIHDYLKHQGLKVAKIHGG 276

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII---IENAEHFGLAQLHQLRG 581
           +   ++  +M    +   + ++AT +   GID+   S++I   I   + F + ++    G
Sbjct: 277 IQPRERRRIMKEVADLKYQYVVATDLAARGIDIKGVSMVINAEIPRDQEFFIHRV----G 332

Query: 582 RVGRGEEISSCILLYHP 598
           R GR     + I LY P
Sbjct: 333 RTGRNGLPGTAITLYEP 349


>gi|254455945|ref|ZP_05069374.1| primosomal protein N' [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082947|gb|EDZ60373.1| primosomal protein N' [Candidatus Pelagibacter sp. HTCC7211]
          Length = 651

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 21/184 (11%)

Query: 282 KDILQDMSQKNRMLRI--LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHY 338
           K  L+ M+  N+  R+  LQG  GSGKT+V   A+ A +  G Q +I+ P IG+  Q   
Sbjct: 128 KKSLRKMNVSNQKFRVHVLQGTTGSGKTMVYFEALKAIINKGFQGLILLPEIGLTGQ--- 184

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLIL 397
            F KK+ +       +    + +  +      I +G+  ++IG   +LF   + + KL L
Sbjct: 185 -FEKKFKEFFGFTPAVWHSGITKKKKEIIWSGITNGEIKVVIGARSSLF---LPFKKLGL 240

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLGDIDISK 447
           +IVDE+H    +Q   +T  A    +           L+TA P   T      G   ISK
Sbjct: 241 IIVDEEHDQSYKQDEGVTYNARDMAISRASFENIPINLITAVPSIETYENIKKGKFTISK 300

Query: 448 ITEK 451
           + ++
Sbjct: 301 LEKR 304


>gi|74006746|ref|XP_861599.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 13 [Canis familiaris]
          Length = 656

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 87/402 (21%), Positives = 169/402 (42%), Gaps = 74/402 (18%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            + + + G                ++++AP   LA Q YE  +K++  +++   ++ G  
Sbjct: 239 LSQIYSDGPGEENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGA 298

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-----FGVQ 409
               + + LER      H+++ T     D ++  K+ L     +++DE  R     F  Q
Sbjct: 299 DIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 354

Query: 410 QRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVI 462
            R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  + I   +
Sbjct: 355 IRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKV 413

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
           + +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  +   IH
Sbjct: 414 VWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY--ACTSIH 466

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           G  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 467 GDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 508


>gi|295674415|ref|XP_002797753.1| ATP-dependent RNA helicase DBP3 [Paracoccidioides brasiliensis
           Pb01]
 gi|226280403|gb|EEH35969.1| ATP-dependent RNA helicase DBP3 [Paracoccidioides brasiliensis
           Pb01]
          Length = 486

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 140/330 (42%), Gaps = 51/330 (15%)

Query: 300 GDVGSGKTLV-ALIAMAAAVEAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +  +   +E  G        AVI+ P   LA Q Y+ + K+T N  + 
Sbjct: 114 AETGSGKTLAFGVPCIRKVLEINGPRSSSRISAVIITPTRELATQIYDQLMKFTPN-NVG 172

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
           +  I G   +  +R+AL++     A +++ T    +D     S++  K+  +++DE  R 
Sbjct: 173 IACIYGGASKDDQRRALKK-----ASVVVATTGRLKDFQGDESLRLDKVKYLVLDEADRM 227

Query: 407 ---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-- 461
              G +Q +K    A       M ++   +T++ T+   I + K+ +     + + T+  
Sbjct: 228 LDKGFEQDIKDIVGA-------MPSSKKRQTVMFTATWPISVRKLADTFMKDQVMITIGD 280

Query: 462 ----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-----------FRSVVER 506
               I    RI +++E    VL    K Y +   + + +              ++    R
Sbjct: 281 LSSDIRANTRIKQIVE----VLKPEDKEYRLLSLLNQYQRGKNAMDKVLVFCLYKKEATR 336

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              L       +A IHG M+  ++   +D+FK+G   LL+AT V   G+D+    +++  
Sbjct: 337 IERLIRSKGFKVAGIHGDMNQTERFKSLDAFKSGAVPLLVATDVAARGLDIPAVRLVLNV 396

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
                    +H++ GR GR       I ++
Sbjct: 397 TFPLTVEDYVHRI-GRTGRAGADGLAITMF 425


>gi|312963542|ref|ZP_07778024.1| ATP-independent RNA helicase DbpA [Pseudomonas fluorescens WH6]
 gi|311282348|gb|EFQ60947.1| ATP-independent RNA helicase DbpA [Pseudomonas fluorescens WH6]
          Length = 423

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 109/438 (24%), Positives = 189/438 (43%), Gaps = 77/438 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  +    I V
Sbjct: 9   IAQAKTGSGKTAAFGIGLLNPINPRYFGCQALVMCPTRELADQVAKEIRRLARAEDNIKV 68

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AH+I+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 69  LTLCGGVSLGPQIASLE---HG-AHVIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRM- 123

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               L +        ++  T  P  +TL+ ++   + I ++  K   R P +      + 
Sbjct: 124 ----LDMGFYDAIEDIISKT-PPRRQTLLFSATYPVSIKQLASKFM-RAPQQVKAEAFHS 177

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKES------NFR--SVV------ERFNSLHEH 513
            D++ +R           Y I P  EE+ ++      +FR  S V      ++     +H
Sbjct: 178 DDQIEQRF----------YEISP--EERMDAVTKVLAHFRPASCVAFCFTKQQVQETVDH 225

Query: 514 FTSS--IAI-IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            T+    A+ +HG +   D++ V+  F N +  +L+AT V   G+D +DA  ++I N E 
Sbjct: 226 LTAKGICAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVI-NVEL 283

Query: 571 FGLAQLHQLR-GRVGRGEEISSCILLYHPP----------LSKN--SYTRLSVLKNTEDG 617
              +++H  R GR GR  E    I L  P           L K+  ++ +L  LK    G
Sbjct: 284 ARDSEIHIHRVGRTGRAGETGIAISLVAPSEAHRAQAIEQLQKSPLNWDQLDNLKPQSGG 343

Query: 618 --------FLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAKH 665
                     IA     + + G+ILG    ++G+P   + +  + D  + + + R  AK 
Sbjct: 344 PLLPQMSTLCIAAGRKDKVRPGDILGALTGEAGIPGAQVGKIAIFDFQAFVAVERGIAKQ 403

Query: 666 ILTQDPDLTSVRGQSIRI 683
            L +  D   ++G+S+R+
Sbjct: 404 ALQRLND-GKIKGRSLRV 420


>gi|321252102|ref|XP_003192288.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
 gi|317458756|gb|ADV20501.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
          Length = 1063

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 160/382 (41%), Gaps = 73/382 (19%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+  L+ M   V          G  AV+++P   LA Q Y+  + + +   I   
Sbjct: 440 TGSGKTVAFLLPMLRHVRDQRPVSGSEGPIAVVLSPTRELATQIYKECQPFLKVLNIRAS 499

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
              G    +    A+++     A ++I T     D +           +   +++DE  R
Sbjct: 500 CCVGGSSISEDIAAMKK----GAEVVICTPGRMIDLLTANNGRVTNVRRTTYIVMDEADR 555

Query: 406 F---GVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKP-----AGR 455
               G + ++        P+   +L +AT  P+T+   SL      KI  KP      GR
Sbjct: 556 MFDMGFEPQVMKIINNVRPNAQKVLFSAT-FPKTM--ESLA----RKILVKPLEITVGGR 608

Query: 456 KPIKTVIIPINRIDEVIE---------RLKVVLSEGKKAYWICPQIEEKKESNFRSV--V 504
               +V+ P   ID+ +E         RL  +L E  +        E K E +FR++  V
Sbjct: 609 ----SVVAP--EIDQRVEVRDGDTKFTRLLEILGEMGE--------EHKDEDDFRALIFV 654

Query: 505 ERFNSLHEHFTSSI------AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           +R  S  + F   +      A +HG    +D++  + +FKNG   +++AT+V   G+DV 
Sbjct: 655 DRQESADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNFKNGDVPIIVATSVAARGLDVK 714

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +  ++I  +A +     +H+  GR GR     +CI    P   + S   + +++  E   
Sbjct: 715 ELKLVINYDAPNHMEDYVHRA-GRTGRAGNKGTCITFITPEQERFS---VDIVRALEASK 770

Query: 619 LIAEEDLKQRKEGEILGIKQSG 640
               +DLKQ  +   LG  +SG
Sbjct: 771 AFIPDDLKQMSD-SFLGKIKSG 791


>gi|301101090|ref|XP_002899634.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262103942|gb|EEY61994.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 456

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 133/318 (41%), Gaps = 59/318 (18%)

Query: 303 GSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           GSGKTL   + M   V          G  A+++AP   LA Q Y   KK+          
Sbjct: 109 GSGKTLAFTLPMVRHVMDQRELQRGEGPIALVLAPTRELAHQTYVQAKKFLAVYGASCAA 168

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF--- 406
           I G   +  + +AL++       +++ T     + I+       ++  V++DE  R    
Sbjct: 169 IYGGAGKWEQVQALKK----GVEVVVATPGRLIEMIRKKAAPMNRVTFVVLDEADRMFEM 224

Query: 407 GVQQRLKLTQKATAP--HVLLMTATPIPR--TLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           G + +L+       P   +L+ +AT   R  TL L  L +              P+K  +
Sbjct: 225 GFEPQLRSVMGQVRPDRQILMFSATFRRRIETLALDVLTN--------------PVKLTV 270

Query: 463 IPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI- 520
             I + +E I ++ VVL   G K  W+  +I    +     +     +  E    ++A+ 
Sbjct: 271 GQIGQANEDIRQIAVVLPGHGAKWPWLMSKIRSLVDEGRLLIFAGSKAGCEELAKNLAVA 330

Query: 521 --------IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                   +HG  +  ++   +  FK+G C++L+AT V   G+DV D     ++N  +F 
Sbjct: 331 FPAAPALCLHGDKTQQERAEALTKFKHGACRVLVATDVAARGLDVKD-----VKNVVNFD 385

Query: 573 LAQ-----LHQLRGRVGR 585
           +A+     +H++ GR GR
Sbjct: 386 VAKSIDTHVHRI-GRTGR 402


>gi|76802635|ref|YP_330730.1| Lhr-like helicase [Natronomonas pharaonis DSM 2160]
 gi|76558500|emb|CAI50092.1| Lhr-like helicase [Natronomonas pharaonis DSM 2160]
          Length = 949

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 154/376 (40%), Gaps = 46/376 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-----GGQAVI 326
           +PT  Q  AI  +    S       ++    GSGKT  A++ + ++++      G QA+ 
Sbjct: 33  TPTAPQRKAIPTLAAGESG------LVVAPTGSGKTETAMLPVLSSIQERPPRHGIQALY 86

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P+  L +   E ++ + +   I +++  G+     R+K     A     +++ T    
Sbjct: 87  ITPLRALNRDMRERLEWWGETLGIDIDVRHGDTTDYQRQKQ----AEDPPDVLVTTPETL 142

Query: 387 QDSIQYYKLIL-------VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           Q      KL         ++VDE H     +R    Q       L   A P  R  +  +
Sbjct: 143 QAMFTGEKLRRAIEDIEHIVVDEVHELAGSKRG--AQLTVGLEHLREHAGPFQRIGLSAT 200

Query: 440 LGD-IDISK---------ITEKPAGRKPIKTVIIP-INRIDEVIERLKVVLSEGKKAYWI 488
           +GD  ++ +         +T+  AG     TV  P I   D       +  +E      +
Sbjct: 201 VGDPTEVGRFLTGDRGCHVTDVEAGTNLDVTVRTPEIRPEDRTAAGELLTDAEVASHVRV 260

Query: 489 CPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
             ++ +  +S     N R   E   S  + + ++I I HG +S   +  V D+FK G   
Sbjct: 261 IDELVDAHDSVLIFVNTRQTAEGLGSRLKAYGTNIGIHHGSLSKSARIDVEDAFKTGEID 320

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG--RGEEISSCILLYHPPLS 601
            L+ T+ +E+GIDV D    +I+ A    + +L Q  GR G  R E  S  ++  HP   
Sbjct: 321 GLMCTSSMELGIDVGDID-HVIQYASPREVRRLLQRVGRAGHRRDETSSGTVITTHP--- 376

Query: 602 KNSYTRLSVLKNTEDG 617
            +++  LS++   E G
Sbjct: 377 DDTFEALSIVDRAERG 392


>gi|195493167|ref|XP_002094300.1| GE20271 [Drosophila yakuba]
 gi|194180401|gb|EDW94012.1| GE20271 [Drosophila yakuba]
          Length = 1057

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 152/346 (43%), Gaps = 59/346 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +PTK Q +AI   L +M        I+Q   G+GKTL+ +IA      A      A+I+ 
Sbjct: 47  TPTKIQAAAIPMALTNMD------LIVQSKSGTGKTLIYVIAAMQGYHAKMTRPHALIVV 100

Query: 329 P---IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA- 384
           P   + I  Q  + ++ +  ++ +    I    + +  RR    RI       IIGT   
Sbjct: 101 PTRELAIQVQDTFFYLCESYRDFKCSAFIGGTEVAKDRRRMQASRI-------IIGTPGR 153

Query: 385 ---LFQDSI-QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
              L+Q+ +    KL L+++DE  +    + L+ T         L+ A P  R ++  S 
Sbjct: 154 LLHLYQNRVLDVSKLGLLVLDEADQLYQTKSLQDTVSK------LIQALPKNRQIIACSA 207

Query: 441 G-----DIDISKITEKPA--GRKPIKTVIIPI-----------NRIDEVIERLKVVLSEG 482
                 D+ ++KI  KP         TV++ I           N ++E+  +LKV+    
Sbjct: 208 TYDQDLDVRLAKIMNKPMLISNSERATVLLGIRQFVYELPQQTNSVEEMRLKLKVLAQ-- 265

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKN 539
                I  Q+  ++   F S   R +S   + T+S     +I G M   ++ +V + ++N
Sbjct: 266 -----IFNQLPYEQAVLFASSQMRADSYKNYLTASGIECHLISGAMEQSERLNVFEGYRN 320

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            T + L+AT ++  G+D   A+++I  +     +  LH++ GR GR
Sbjct: 321 FTMRTLVATDLMARGVDSPHANLVINIDPPQDHVTYLHRI-GRAGR 365


>gi|225851664|ref|YP_002731897.1| DEAD-box ATP-dependent RNA helicase YdbR [Brucella melitensis ATCC
           23457]
 gi|256264826|ref|ZP_05467358.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|225640029|gb|ACN99942.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella melitensis ATCC
           23457]
 gi|263095281|gb|EEZ18908.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
          Length = 626

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 42/330 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     +HI++GT    +D I        Q   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GSHIVVGTPGRLRDHITRNALDMSQLRAIVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD----IDISKITEKP 452
            DE    G ++ L+  L +       L+ +AT P P   +     +    I +   T + 
Sbjct: 157 ADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQH 216

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    +   + P  R   +I  L  +  + + +   C         + R  V+   S   
Sbjct: 217 ADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRLS 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 266 NRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
              LH+  GR GR     +C+L+   P S+
Sbjct: 326 DTLLHR-SGRTGRAGRKGTCVLVV--PFSR 352


>gi|237798217|ref|ZP_04586678.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021069|gb|EGI01126.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 459

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 187/428 (43%), Gaps = 57/428 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  ++   I V
Sbjct: 45  IAQAKTGSGKTAAFGIGLLNPINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 105 LTLCGGVSFGPQIGSLE---HG-AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRM- 159

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++   + I +++ K   R P +TV +   
Sbjct: 160 ------LDMGFYDSIADIIEQTPQRRQTLLFSATYPVGIKQLSSKFM-RDP-QTVKVEAL 211

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAI 520
             D  IE++   +S  ++   +   I   + ++   F    ++   + +H T+   S   
Sbjct: 212 HADSQIEQIFYEISPEQRLEAVVKVIGHFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVG 271

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++ V+  F N +  +L+AT V   G+D +DA  +++ N E    +++H  R
Sbjct: 272 LHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVL-NVELARDSEIHIHR 329

Query: 581 -GRVGRGEEISSCILLYHP---------------PLSKNSYTRLSVLKNTE-----DGFL 619
            GR GR  E    + L  P               PL+   Y +LS+ +  +         
Sbjct: 330 VGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQQYDKLSIKEGGKLLPAMTTLC 389

Query: 620 IAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAKHILTQDPDLTS 675
           I      + + G+ILG    ++G+    + +  + D  + + + R  AK  L +  +   
Sbjct: 390 IGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALERLNN-GK 448

Query: 676 VRGQSIRI 683
           ++G+S+R+
Sbjct: 449 IKGKSLRV 456


>gi|328479862|gb|EGF48950.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus MTCC 5462]
          Length = 100

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 44/78 (56%)

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           + ++  T DGFL+A++DL+ R  G+I G KQSG+P+F +A P      LE A++    I 
Sbjct: 12  MQIMTKTNDGFLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEAAQQIVAKIF 71

Query: 668 TQDPDLTSVRGQSIRILL 685
             DP L +   Q +   L
Sbjct: 72  KTDPHLLAPEHQPLAAYL 89


>gi|326408143|gb|ADZ65208.1| DEAD-box ATP-dependent RNA helicase YdbR [Brucella melitensis M28]
          Length = 626

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 42/330 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     +HI++GT    +D I        Q   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GSHIVVGTPGRLRDHITRNALDMSQLRAIVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD----IDISKITEKP 452
            DE    G ++ L+  L +       L+ +AT P P   +     +    I +   T + 
Sbjct: 157 ADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQH 216

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    +   + P  R   +I  L  +  + + +   C         + R  V+   S   
Sbjct: 217 ADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRLS 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 266 NRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
              LH+  GR GR     +C+L+   P S+
Sbjct: 326 DTLLHR-SGRTGRAGRKGTCVLVV--PFSR 352


>gi|124515178|gb|EAY56689.1| putative ATP-dependent helicase [Leptospirillum rubarum]
          Length = 444

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 140/345 (40%), Gaps = 34/345 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           SPT  Q+ +I  ++        +L I Q   G+GKT   L+ +   +  G       +A+
Sbjct: 23  SPTPIQKQSIPHVIDGRD----LLGIAQ--TGTGKTGGFLLPVLHKIAEGRRHGIRNRAL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +++P   LA Q ++  K Y +       ++ G +    + + L+R       I++ T   
Sbjct: 77  VLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLKR----NWDIVVATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPR-- 433
             D ++   L L     VI+DE  R     F       + Q       LL +AT  PR  
Sbjct: 133 LLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQSLLFSATCPPRIQ 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L  T   D  I ++  +  G   I    I ++   + +  LK VL EGK          
Sbjct: 193 ELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLDEGKSETGQVIIFT 252

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             K    RS  +   +L++    S A+ HG  S   +  V+  F+ G  K+L+AT V   
Sbjct: 253 RTK----RSAEDLSIALNDAGYPSDAL-HGDKSQPVRNRVLSRFRRGDLKVLVATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   + +I  +        +H++ GR GR       +  +HP
Sbjct: 308 GLDIDGITHVINYDLPQTAEDYVHRI-GRTGRAGRTGRALSFFHP 351


>gi|90422395|ref|YP_530765.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
 gi|90104409|gb|ABD86446.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
          Length = 659

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 148/340 (43%), Gaps = 44/340 (12%)

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILA 334
           +L D +    +L  +    GSGKT+   +A+A  +          A   A+I+AP   LA
Sbjct: 29  VLADQAAGRDLL--VSAQTGSGKTVAYGLAIAKNLLGDAERFEQAAAPLALIVAPTRELA 86

Query: 335 -QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            Q H E    Y      +V  + G  P+  +R+    +A G AHI++GT     D ++  
Sbjct: 87  LQVHRELAWLYAYADARVVSCVGGMDPRQEQRE----LARG-AHIVVGTPGRLCDHLRRG 141

Query: 394 KL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDI 443
           +L        +L   DE    G ++ ++   K T P    LL +AT +PR +V       
Sbjct: 142 RLDVSQLKAVVLDEADEMLDLGFREDMEFILKTTPPTRRTLLFSAT-LPRGIVA------ 194

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----N 499
            ++K  ++ A R  ++         D   + +++   + + A     +  E   +    N
Sbjct: 195 -LAKQYQQQAFR--VEVANGEGGHADIEYQAIRIAPGDVEHAVVNVLRFHESPSTIVFCN 251

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R+ V+   +       S+  + G ++  ++   + S ++G  ++ +AT V   GID+ +
Sbjct: 252 TRNAVKHLQTALLERGFSVVALSGELTQNERTMALQSLRDGRARVCVATDVAARGIDLPN 311

Query: 560 ASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
            +++I  +A+    A++ Q R GR GR  +    +LL  P
Sbjct: 312 LALVI--HADLPNDAEVMQHRSGRTGRAGKKGVSVLLVPP 349


>gi|20373098|dbj|BAB91216.1| RNA helicase [Mesocricetus auratus]
          Length = 662

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 170/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + A G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGAEIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 413

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  +D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 414 NITQKVVWVEEMDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 466

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|188589125|ref|YP_001921452.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499406|gb|ACD52542.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 812

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 148/344 (43%), Gaps = 48/344 (13%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           K QE+ I +I+      N +L I+    G GK++   +    A+   G  ++++P+  L 
Sbjct: 20  KGQENIISNIIDG----NDVLAIMP--TGGGKSICYQVP---ALIFEGLTIVISPLISLM 70

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII-IGTHAL----FQDS 389
           +   + +K    N     E I  ++  A   + ++ I +GQ  I+ +    L    F + 
Sbjct: 71  KDQVDALKDMGING----EFINSSISSAEENRVIDNIRNGQCKILYVAPERLESLNFLNV 126

Query: 390 IQYYKLILVIVDEQH---RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI--D 444
           I    +  + +DE H   ++G   R   T+   +  + L+   PI      T+  ++  D
Sbjct: 127 ISECSVSQIAIDEAHCISQWGHDFRTSYTK--VSGFIKLLKTRPIITAFTATASEEVRED 184

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FR 501
           I K+       KP K  I   +R + +I     V+  G K  ++   I   KES+   + 
Sbjct: 185 IIKLLNL---NKP-KIFITGFDRENLLIN----VIKSGDKKSYLHNYINNNKESSGVIYA 236

Query: 502 SVVERFNSLHE---HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           +  +  + +HE   H   SI   H  +S+ D++   + F      +++AT    +GID  
Sbjct: 237 ATRKEVDKIHEELSHNGFSITKYHAGLSENDRKQNQEDFIYDRSNIMVATNAFGMGIDKP 296

Query: 559 DASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHP 598
           +   ++     H+ + +     +Q  GR GR  E S CILL+ P
Sbjct: 297 NIRFVV-----HYNMPKNIEGYYQEIGRAGRDGEKSECILLFSP 335


>gi|15898827|ref|NP_343432.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|229578785|ref|YP_002837183.1| DEAD/DEAH box helicase [Sulfolobus islandicus Y.G.57.14]
 gi|238619197|ref|YP_002914022.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.4]
 gi|284997087|ref|YP_003418854.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.D.8.5]
 gi|13815318|gb|AAK42222.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|228009499|gb|ACP45261.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.G.57.14]
 gi|238380266|gb|ACR41354.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.4]
 gi|284444982|gb|ADB86484.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.D.8.5]
          Length = 360

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 135/336 (40%), Gaps = 42/336 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
           PT+ QE  I +++   S       I+Q   GSGKT   +I +   +E    A+I++P   
Sbjct: 38  PTRVQEVVIPELMNGKSV------IVQAKTGSGKTAAYVIPI---LERNSTALILSPTRE 88

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD---- 388
           LA Q  + IKK  +  QI V +I G M    +R         Q+ I++GT     D    
Sbjct: 89  LATQILDEIKKLGKYKQIDVSLIIGGMSYDDQR---------QSKIVVGTPGRLLDLWSK 139

Query: 389 -SIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
             I +     VIVDE  R    G    +++        +    +  IP  ++  +     
Sbjct: 140 GKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIAGFFSATIPDEIMTLA----- 194

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSV 503
                 K   +   + V+     ++EV ++ +KV      K   +  +I  +K   F   
Sbjct: 195 ------KEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLLEEINGEKILVFART 248

Query: 504 VERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            +R   L+        ++ ++ G M    +      FK G   +L+AT +   GID++D 
Sbjct: 249 RDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATDLASRGIDIIDV 308

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           + +I  +        +H++ GR GR   +   I  Y
Sbjct: 309 NKVINFDIPRDVETYIHRV-GRTGRMGRVGQAITFY 343


>gi|50083665|ref|YP_045175.1| primosomal protein N' [Acinetobacter sp. ADP1]
 gi|49529641|emb|CAG67353.1| primosomal protein N' (= factor Y) directs replication fork
           assembly at D-loops, ATP-dependent [Acinetobacter sp.
           ADP1]
          Length = 743

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +P   Q +AI+ +L+ +      L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 203 LAQMPLTPNPDQHNAIQRVLKSLHHYQAFL--LDGLTGSGKTEVYLQIMHEVLKQGKQVL 260

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q     I ++       V ++   +  + R +A ++   G+A II+GT +
Sbjct: 261 VLVPEIGLTPQT----ISRFKSRFHCDVALLHSGLNDSKRLQAWQQAKMGKASIILGTRS 316

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                +   +L L+I+DE+H    +Q+
Sbjct: 317 AIYTPLP--RLGLIILDEEHDLSYKQQ 341


>gi|307705236|ref|ZP_07642104.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
 gi|307621209|gb|EFO00278.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
          Length = 447

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 137/315 (43%), Gaps = 31/315 (9%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT-- 356
            GSGKT   L+ +   ++      QAVI AP   LA Q Y+  ++   ++++ V ++   
Sbjct: 47  TGSGKTHTFLLPIFQQLDEASDSVQAVITAPSRELATQIYQAARQIAAHSEVEVRVVNYV 106

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQR 411
           G   +A   + +E++A  Q HI+IGT     D ++      +K    +VDE         
Sbjct: 107 GGTDKA---RQIEKLASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGF 163

Query: 412 LKLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           L+   K           ++ +AT IP+ L         + K    P   K IKT  +  +
Sbjct: 164 LETVDKIAGSLPKDLQFMVFSAT-IPQKLQPF------LKKYLSNPVMEK-IKTKTVISD 215

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHG 523
            ID  +   K    +  + Y +   ++      F +   R + LH + T+    +A IHG
Sbjct: 216 TIDNWLISTKG-RDKNAQIYQLTQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHG 274

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            ++  +++ +M+  KN   + ++AT +   GID+   S +I +         +H++ GR 
Sbjct: 275 DIAPRERKRIMNQVKNLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRT 333

Query: 584 GRGEEISSCILLYHP 598
           GR     + I LY P
Sbjct: 334 GRNGLPGTAITLYQP 348


>gi|254476157|ref|ZP_05089543.1| cold-shock deAd-box protein a [Ruegeria sp. R11]
 gi|214030400|gb|EEB71235.1| cold-shock deAd-box protein a [Ruegeria sp. R11]
          Length = 724

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 142/342 (41%), Gaps = 53/342 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +AMA  +    +         A+++AP   LA Q   E    Y +
Sbjct: 35  LVSAQTGSGKTVGFGLAMAPTLLGDAETLGRATLPLALVIAPTRELALQVKRELGWLYAE 94

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILV 398
               +V  + G M     R+ALER     AHI++ T    +D I        Q   ++L 
Sbjct: 95  AGAHVVSTV-GGMDMRDERRALER----GAHIVVATPGRLRDHINRGSIDLSQVRAVVLD 149

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE---KPAGR 455
             DE    G ++ L+          +L  +    RTL+ ++     I+++ E   K   R
Sbjct: 150 EADEMLDLGFREDLEF---------ILGESPEDRRTLMFSATVPAGIARLAETYLKDHQR 200

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSLH 511
             IKT+       D   + L V   + + A     +  E   +    N R+VV R  +  
Sbjct: 201 --IKTLAEASQHADIEYQMLAVAQRDTEHAIINVLRYHEAPNAIVFCNTRAVVNRLTTRL 258

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            +   S+  + G ++  ++ + + S ++G  ++ +AT V   GID+    ++I     H 
Sbjct: 259 SNRGFSVVALSGELTQSERSNALQSLRDGRARVCVATDVAARGIDLPKLDLVI-----HA 313

Query: 572 GLAQLHQL----RGRVGR-GEEISSCILLYHPPLSKNSYTRL 608
            L   H+      GR GR G +  S +++  PP +K    RL
Sbjct: 314 DLPSSHETLLHRSGRTGRAGRQGVSALIV--PPKAKGKALRL 353


>gi|226428972|gb|ACO55106.1| transcription-repair coupling factor [Allochromatium vinosum DSM
           180]
 gi|226428976|gb|ACO55108.1| transcription-repair coupling factor [Allochromatium sp. AX1YPE]
 gi|226428980|gb|ACO55110.1| transcription-repair coupling factor [Allochromatium renukae]
 gi|226428982|gb|ACO55111.1| transcription-repair coupling factor [Allochromatium vinosum]
 gi|226428984|gb|ACO55112.1| transcription-repair coupling factor [Allochromatium vinosum]
          Length = 74

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 43/67 (64%)

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++  L+ +A G   I++GTH L Q +I++  L L I+DE+HRFGV+ + +L    +   V
Sbjct: 8   QKAVLDGLADGTVDIVVGTHKLLQPTIRFKNLGLAIIDEEHRFGVRHKEQLKNLRSEVDV 67

Query: 424 LLMTATP 430
           L +TATP
Sbjct: 68  LTLTATP 74


>gi|195376137|ref|XP_002046853.1| GJ12262 [Drosophila virilis]
 gi|194154011|gb|EDW69195.1| GJ12262 [Drosophila virilis]
          Length = 778

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 137/328 (41%), Gaps = 55/328 (16%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  NTQ+   
Sbjct: 188 TGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVASEFGSNTQVRNT 247

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I+I T     D ++     L     +++DE  R   
Sbjct: 248 CIFGGAPKGQQARDLER----GVEIVIATPGRLIDFLERGTTTLKRCTYLVLDEADRMLD 303

Query: 407 -GVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            G + ++ K+ Q+      +LM +   P+ +       L +   ++I  ++         
Sbjct: 304 MGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLS------A 357

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFT 515
              I+ I  +D   E  K+V     K   +  QI  + E+    F    +R + +  + +
Sbjct: 358 NHNILQI--VDVCDESEKIV-----KLIQLLTQISGENETKTIIFVETKKRVDEITRNIS 410

Query: 516 SS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENA 568
                   IHG  S  +++ V+ SF+NG   +L+AT V   G+DV D   +I      N+
Sbjct: 411 RQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNS 470

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY 596
           E +    +H++ GR GR     +   L+
Sbjct: 471 EDY----VHRI-GRTGRSNNTGTAYTLF 493


>gi|114564913|ref|YP_752427.1| primosomal protein N' [Shewanella frigidimarina NCIMB 400]
 gi|114336206|gb|ABI73588.1| primosomal protein N' [Shewanella frigidimarina NCIMB 400]
          Length = 731

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 98/215 (45%), Gaps = 20/215 (9%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q I+   P    K Q  A+  + Q   Q+     +L+G  GSGKT V L  +   ++ G 
Sbjct: 192 QLIMNESPHKLNKQQAVAVSVLTQ---QQGFHCTLLEGITGSGKTEVYLTLLETILKQGK 248

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+I+ P IG+  Q    F +++  N  +I   +T N     R +A  +   G+A IIIG
Sbjct: 249 QALILVPEIGLTPQTINRFKRRFEVNVAVIHSGLTDN----QRLEAWRQARVGEAAIIIG 304

Query: 382 THALFQDSIQYYKLILVIVDEQH--RFGVQQRLKLTQKATAP--------HVLLMTATPI 431
           T +     + Y  LI  I+DE+H   F  Q+ ++   +  A          V+L +ATP 
Sbjct: 305 TRSALFTPMAYPGLI--ILDEEHDSSFKQQEGVRYHARDLAVMRGHLEDIQVVLGSATPS 362

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
             TL     G     +++E+    + +K  I+ I 
Sbjct: 363 LETLQNALSGRYHHLELSERAGAAQKVKQGIVDIT 397


>gi|311032733|ref|ZP_07710823.1| ATP-dependent RNA helicase [Bacillus sp. m3-13]
          Length = 449

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 147/314 (46%), Gaps = 48/314 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   G+GKTL  L+ +   ++   Q   A+I+AP   LA Q +E I+K+T+ ++I   
Sbjct: 43  LVESPTGTGKTLAYLLPIIERIDLSKQHPQALIVAPSKELAMQIFEQIQKWTEGSEISGA 102

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGV 408
              G    A+ ++ LE++   + HI++GT    Q+ IQ  K+ +     +++DE  +  V
Sbjct: 103 SFIGG---ANVKRQLEKLKK-KPHILVGTPGRLQELIQMKKIKMHEVKTIVMDEADQLFV 158

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            +  K  +       ++ ++    R L+L S     + + TEK A     + ++I + + 
Sbjct: 159 PEHKKTIEN------IIKSSMQQERQLLLFS---ATLKEETEKQAVDLLKEPLVIKVTKE 209

Query: 469 D---EVIERLKVVLSEGKKAYWICPQIEE---------KKESNFRSVVERFNSLHEHFTS 516
           D     +E L  V+ +  KA  +   + E         +   N   + E+   L++    
Sbjct: 210 DLPPARVEHLYAVVDQRDKANVLANLLREPGIKALAFVRDIGNLAVLTEKL--LYKQL-- 265

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ- 575
           ++  +H   S  ++E+ M +F+     +L+AT V   G+D+ + S +I     H+ L + 
Sbjct: 266 NVGFLHSESSKQERENAMKNFRKDEYPVLLATDVAARGLDIKELSHVI-----HYDLPEE 320

Query: 576 ----LHQLRGRVGR 585
               +H+  GR GR
Sbjct: 321 VESYVHR-SGRTGR 333


>gi|257455054|ref|ZP_05620298.1| primosomal protein N' [Enhydrobacter aerosaccus SK60]
 gi|257447567|gb|EEV22566.1| primosomal protein N' [Enhydrobacter aerosaccus SK60]
          Length = 746

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 23/206 (11%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L   P +    Q+ A++ I +   Q +    +L G  GSGKT V L  M   +  G Q +
Sbjct: 201 LATTPLTLNLQQQQAVQKITRACQQPHYEGFLLNGITGSGKTEVYLQVMQTVLAQGKQVL 260

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           I+ P IG+  Q    F +++  + Q++  ++   +    R    ++   G A IIIGT +
Sbjct: 261 ILVPEIGLTPQTRQRFAERF--DAQVL--MLHSGLNDTVRLDGWQQCRLGYAQIIIGTRS 316

Query: 385 LFQDSIQY--YKLILVIVDEQHRFGVQQRLKLTQKAT-----------APHVLLMTATPI 431
               S+ Y    L L+IVDE H    +Q+  L   A+            P V+L TATP 
Sbjct: 317 ----SVLYPFANLGLIIVDESHDQSYKQQDSLRYHASDVALYRGFQLNCP-VILGTATPS 371

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKP 457
             +L L   G +    +T++    KP
Sbjct: 372 LESLYLVQQGKLTELTLTQRAGDAKP 397


>gi|311694220|gb|ADP97093.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 457

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 141/324 (43%), Gaps = 42/324 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I     GSGKT    I++   +       QA+++ P   LA Q  + I++  +    I V
Sbjct: 43  IAMAKTGSGKTAAFGISLVERLNPRLFAVQALVLCPTRELADQVAKAIRELARARDNIKV 102

Query: 353 EIITGNM---PQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQH 404
             + G +   PQ      +  ++HG AHI++GT    QD     ++   +L  V++DE  
Sbjct: 103 LTLCGGVAIGPQ------IGSLSHG-AHIVVGTPGRIQDHLRKQTLSLVRLKTVVLDEAD 155

Query: 405 RF---GVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           R    G Q+ ++  L+Q   +   ++ +AT P P   +        +    E       I
Sbjct: 156 RMLDMGFQEAMEDILSQTPPSRQTMMFSATWPAPIRELSKQYQKSPVDVRAEDTGDNPDI 215

Query: 459 KTV---IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           + +   + P ++ D ++     +LSE +    I     +++  +  +       L E   
Sbjct: 216 EELFYEVSPQSKSDAIV----ALLSERQPESCIVFCTTKQQCDDMAA------ELGERGF 265

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           S++ + HG +   D++SV+  F N +C +L+AT V   G+D+    ++I  NAE     +
Sbjct: 266 SALPL-HGDLEQRDRDSVLVRFGNQSCSILVATDVAARGLDIKSLPLVI--NAEPARDPE 322

Query: 576 LHQLR-GRVGRGEEISSCILLYHP 598
           +H  R GR GR  E    +    P
Sbjct: 323 VHTHRIGRTGRAGEQGHAVTFCTP 346


>gi|227499384|ref|ZP_03929495.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098]
 gi|227218446|gb|EEI83689.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098]
          Length = 553

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 133/311 (42%), Gaps = 45/311 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           I Q   G+GKT    I +   VEA    Q++I+ P   L  Q     E + KY ++ +++
Sbjct: 56  IGQAQTGTGKTAAFAIPLVENVEANDITQSLILCPTRELCMQVAREVEKLTKYKKDIKVL 115

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQ 403
              + G      + KALE+     A I++GT     D ++   L        +L   DE 
Sbjct: 116 A--LYGGTQIVKQIKALEK----GAEIVVGTPGRVIDLMKRRVLKLDMLKNVVLDEADEM 169

Query: 404 HRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTSLGD--IDISKITEKPAGRKPIK 459
              G +  +K+   AT P       +AT          +G    + SK+ +    +  IK
Sbjct: 170 FDMGFRDDMKVILDATNPQRQTCFFSAT----------MGKEFAEFSKLYQNNPQKIVIK 219

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-NFRSVVERFNSLHEHFTSSI 518
              + + +ID+   +LK  + E      +  +I   K +  F +   + + L E  T   
Sbjct: 220 ADEVTVEKIDQYYIKLKEAMKEETLTRLL--EINNPKLAIVFCNTKRKVDKLVEELTKKS 277

Query: 519 AII---HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            ++   HG +    ++ VM  F+N T ++LIAT V   G+D+ D  ++I     ++ L Q
Sbjct: 278 YLVDGLHGDLKQSARDQVMKKFRNKTIQILIATDVAARGLDIDDVDLVI-----NYDLPQ 332

Query: 576 LHQLR-GRVGR 585
           L +    R+GR
Sbjct: 333 LDEYYVHRIGR 343


>gi|293365070|ref|ZP_06611787.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           oralis ATCC 35037]
 gi|307702221|ref|ZP_07639181.1| DEAD/DEAH box helicase family protein [Streptococcus oralis ATCC
           35037]
 gi|291316520|gb|EFE56956.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           oralis ATCC 35037]
 gi|307624234|gb|EFO03211.1| DEAD/DEAH box helicase family protein [Streptococcus oralis ATCC
           35037]
          Length = 447

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 152/352 (43%), Gaps = 38/352 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + FS PT+ QE  I  +L       R L + +   GSGKT   L+ +   ++     
Sbjct: 16  LEELKFSTPTEVQEKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDETSDS 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHII 379
            QAVI AP   LA Q Y+  ++   ++ + V ++   G   +A   + +E++A  Q HI+
Sbjct: 70  VQAVITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKA---RQIEKLASNQPHIV 126

Query: 380 IGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTAT 429
           IGT     D ++      +K    +VDE         L+   K           ++ +AT
Sbjct: 127 IGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSAT 186

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            IP+ L         + K    P   K IKT  +  + ID  +   K    +  + Y + 
Sbjct: 187 -IPQKLQPF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-RDKNAQIYELT 237

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN   + ++
Sbjct: 238 QAMQPYLAMIFVNTKTRADELHTYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 298 ATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|326491449|dbj|BAJ94202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 674

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 133/312 (42%), Gaps = 48/312 (15%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L+        M  +  +G   +++AP   LA Q  E   K+ ++++I    
Sbjct: 58  TGSGKTLGYLLPGFMHIKRMQNSTRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTC 117

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---- 405
           + G  P+  + + LER       +++ T     D ++  K+ L     +++DE  R    
Sbjct: 118 LYGGAPKGPQLRDLER----GVDVVVATPGRLNDILEMRKISLKQVSYLVLDEADRMLDM 173

Query: 406 -FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            F  Q R  +    +    L+ TAT  P+ +      +L     + I  + E  A +   
Sbjct: 174 GFEPQIRKIVRDIPSGRQTLMYTAT-WPKEVRRIADELLVHPVQVTIGSVDELVANKAIT 232

Query: 459 K--TVIIPINRIDEVIERLKVVL---SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           +   VI P     E + RL+ +L     G K    C        +  R   +   +L+  
Sbjct: 233 QHVEVITP----SEKLRRLEQILRSHDSGSKILIFC--------TTKRMCDQLSRTLNRQ 280

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F +  A IHG  S  ++E V+  F++G   +L+AT V   G+D+ D  ++I  +      
Sbjct: 281 FGA--AAIHGDKSQNEREKVLSQFRSGRAPILVATDVAARGLDIKDIRVVINYDFPTGVE 338

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 339 DYVHRI-GRTGR 349


>gi|194398476|ref|YP_002037408.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54]
 gi|194358143|gb|ACF56591.1| ATP-dependent RNA helicase, DEAD/DEAH box helicase [Streptococcus
           pneumoniae G54]
          Length = 447

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 155/352 (44%), Gaps = 38/352 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + F+ PT+ Q+  I  +L       R L + +   GSGKT   L+ +   ++     
Sbjct: 16  LKELKFTTPTEVQDKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDEASDS 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHII 379
            QAVI AP   LA Q Y+  ++ + ++ + V ++   G   +A   + +E++A  Q HI+
Sbjct: 70  VQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKA---RXIEKLASNQPHIV 126

Query: 380 IGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTAT 429
           IGT     D ++      +K    +VDE         L++  K           ++ +AT
Sbjct: 127 IGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLEIVDKIAGSLPKDLQFMVFSAT 186

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            IP+ L         + K    P   K IKT  +  + ID  +   K    +  + Y + 
Sbjct: 187 -IPQKLQPF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-HDKNAQIYQLT 237

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             ++      F +   R + LH + T+    +A IHG ++  +++ +M+  +N   + ++
Sbjct: 238 QLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 298 ATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|320037892|gb|EFW19828.1| ATP-dependent RNA helicase dbp3 [Coccidioides posadasii str.
           Silveira]
          Length = 512

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 135/327 (41%), Gaps = 45/327 (13%)

Query: 300 GDVGSGKTLV-ALIAMAAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   L  +   +E           A+I+ P   LA Q Y+ + +++    + 
Sbjct: 140 AETGSGKTLAFGLPCLRRVLELNNSETSCKPCALIITPTRELAVQIYDQLLRFSSVVDVG 199

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
           +  I G  P+ H+R+ +       A ++I T    +D     +I    +  +++DE  R 
Sbjct: 200 IACIYGGSPKDHQRREIR-----NASVVIATPGRLKDFQADQTINLSGVKYLVLDEADRM 254

Query: 407 -----------------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
                              Q+R  +   AT P  +   A    +  V  ++GD    +  
Sbjct: 255 LDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAASFTKNPVTVTIGDSSDIRAN 314

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           ++    K I  V+ P  +   ++E L+      K  + I      KKE+     VERF  
Sbjct: 315 KRI---KQIVEVLQPYEKDSRLLELLRRYQDGAKNNHRILVFCLYKKEA---MRVERFIG 368

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
             + F   +A IHG MS  ++   +++FK+G+  LL+AT V   G+D+    +++     
Sbjct: 369 -SKGF--KVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKLVLNVTFP 425

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY 596
                 +H++ GR GR       I L+
Sbjct: 426 LTIEDYVHRI-GRTGRAGAEGLAITLF 451


>gi|317047085|ref|YP_004114733.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316948702|gb|ADU68177.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 459

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 159/344 (46%), Gaps = 45/344 (13%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           LR + F   T  Q +A+  ILQ      R +R  Q   GSGKT    I +   ++     
Sbjct: 18  LREMGFDAMTPIQAAALPAILQ-----GRDVRA-QAKTGSGKTAAFGIGLLQRIDNSQFH 71

Query: 322 GQAVIMAPIGILAQQHYEFIK---KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            QA+++ P   LA Q    ++   ++T+N +I+   + G  P + +R +L    H   HI
Sbjct: 72  TQALVLCPTRELADQVSNVLRQLARFTRNIKILT--LCGGQPMSAQRDSL---VHA-PHI 125

Query: 379 IIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKAT--APHVLLMTA 428
           ++GT       L +D++   +L  +++DE  R    G +  ++     T  A   LL +A
Sbjct: 126 VVGTPGRILDHLKRDNLDLNQLQTLVLDEADRMLEMGFRDDMEAIIGFTPAARQTLLFSA 185

Query: 429 TPIPRTLV-LTSLGDID-ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           T  P T+  L+     D ++  TE  A    I+   I ++   E    L  +LS+ +   
Sbjct: 186 T-WPDTIASLSERYQRDALAVATETEAELPAIEQRFIEVS-ASERTNLLSALLSQQQPTS 243

Query: 487 WI--CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +  C     K+E +     +   +L++   S++A+ HG +   D+E V+  F NG+ ++
Sbjct: 244 CVVFC---NTKRECD-----DIAAALNDRQISALAL-HGDLEQRDRERVLIRFANGSIRV 294

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           LIAT V   G+D+   ++++  +        LH++ GR GR  E
Sbjct: 295 LIATDVAARGLDIKSLALVVNYHLAWDPEVHLHRI-GRTGRAGE 337


>gi|296444838|ref|ZP_06886801.1| primosomal protein N' [Methylosinus trichosporium OB3b]
 gi|296257786|gb|EFH04850.1| primosomal protein N' [Methylosinus trichosporium OB3b]
          Length = 810

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 33/209 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V   A+AAA+ AGGQA+++ P I + AQ    F++++           
Sbjct: 284 LLEGVTGSGKTEVYFEAVAAALRAGGQALVLMPEIALTAQ----FLERFAARFGAKPAEW 339

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              + +  R +    +A G+A ++ G   ALF   + +  L L++VDE+H    +Q   +
Sbjct: 340 HSGISERKRARLWRGVALGEALVVAGARSALF---LPFVDLRLIVVDEEHEAAYKQEDGV 396

Query: 415 TQKA----------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           +  A              + L +ATP   T V  + G  +  ++  +   R        P
Sbjct: 397 SYHARDMAVVRARLEGATIALASATPSIETRVNAASGRYEHLRLAARAGAR--------P 448

Query: 465 INRIDEVIERLKVVLSEG-KKAYWICPQI 492
           + RI+ +  R     +EG ++  WI P++
Sbjct: 449 MPRIEAIDMR-----NEGPERGRWIAPRL 472


>gi|254718344|ref|ZP_05180155.1| DEAD-box ATP dependent DNA helicase [Brucella sp. 83/13]
 gi|265983304|ref|ZP_06096039.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|306839567|ref|ZP_07472373.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
 gi|306842588|ref|ZP_07475237.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
 gi|264661896|gb|EEZ32157.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|306287233|gb|EFM58721.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
 gi|306405353|gb|EFM61626.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
          Length = 626

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 42/330 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     +HI++GT    +D I        Q   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GSHIVVGTPGRLRDHITRNALDMSQLRVIVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD----IDISKITEKP 452
            DE    G ++ L+  L +       L+ +AT P P   +     +    I +   T + 
Sbjct: 157 ADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQH 216

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    +   + P  R   +I  L  +  + + +   C         + R  V+   S   
Sbjct: 217 ADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRLS 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 266 NRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
              LH+  GR GR     +C+L+   P S+
Sbjct: 326 DTLLHR-SGRTGRAGRKGTCVLVV--PFSR 352


>gi|226428978|gb|ACO55109.1| transcription-repair coupling factor [Allochromatium vinosum]
          Length = 74

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 43/67 (64%)

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++  L+ +A G   I++GTH L Q +I++  L L I+DE+HRFGV+ + +L    +   V
Sbjct: 8   QKAVLDGLADGTLDIVVGTHKLLQPTIRFKNLGLAIIDEEHRFGVRHKEQLKNLRSEVDV 67

Query: 424 LLMTATP 430
           L +TATP
Sbjct: 68  LTLTATP 74


>gi|237650467|ref|ZP_04524719.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae CCRI
           1974]
 gi|237821903|ref|ZP_04597748.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 447

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 154/352 (43%), Gaps = 38/352 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + F+ PT+ Q+  I  +L       R L + +   GSGKT   L+ +   ++     
Sbjct: 16  LKELKFTTPTEVQDKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDEASDS 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHII 379
            QAVI AP   LA Q Y+  ++ + ++ + V ++   G   +A   + +E++A  Q HI+
Sbjct: 70  VQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKA---RQIEKLASNQPHIV 126

Query: 380 IGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTAT 429
           IGT     D ++      +K    +VDE         L+   K           ++ +AT
Sbjct: 127 IGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSAT 186

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            IP+ L         + K    P   K IKT  +  + ID  +   K    +  + Y + 
Sbjct: 187 -IPQKLQPF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-HDKNAQIYQLT 237

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             ++      F +   R + LH + TS    +A IHG ++  +++ +M+  +N   + ++
Sbjct: 238 QLMQPYLAMIFVNTKTRADELHSYLTSQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 298 ATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|195473739|ref|XP_002089150.1| eIF-4a [Drosophila yakuba]
 gi|194175251|gb|EDW88862.1| eIF-4a [Drosophila yakuba]
          Length = 415

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 127/294 (43%), Gaps = 48/294 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q    +    +  ++   
Sbjct: 83  IAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSH 142

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-------QYYKL-ILVIVDEQHR 405
              G      R  A  RI     H+++GT     D I       QY KL +L   DE   
Sbjct: 143 ACIGGT--NVREDA--RILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLS 198

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + +++   K   P   V+L++AT  P  L ++            +   R+P+    I
Sbjct: 199 RGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVS------------RCFMREPVS---I 243

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFN---SL 510
            + + +  +E +K      K+  W    + +  ++          N R  V++     SL
Sbjct: 244 LVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSL 303

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           H +FT  ++ +HG M   D+E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 304 H-NFT--VSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 354


>gi|307250282|ref|ZP_07532235.1| Primosomal protein N' [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306857664|gb|EFM89767.1| Primosomal protein N' [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 524

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++ G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 218 LLNGVTGSGKTEVYLQVIEEVLKRGEQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 273

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
             NM +  R  A  R  +G++ I+IGT  ALF    Q+ KL L+I+DE+H    +Q+
Sbjct: 274 HSNMNETERLNAWLRAKNGESAIVIGTRSALFS---QFEKLGLIIIDEEHDSSFKQQ 327


>gi|254694921|ref|ZP_05156749.1| ATP-dependent RNA helicase DeaD [Brucella abortus bv. 3 str. Tulya]
 gi|261215256|ref|ZP_05929537.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 3 str.
           Tulya]
 gi|260916863|gb|EEX83724.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 3 str.
           Tulya]
          Length = 534

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 42/330 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     +HI++GT    +D I        Q   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GSHIVVGTPGRLRDHITRNALDMSQLRAIVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD----IDISKITEKP 452
            DE    G ++ L+  L +       L+ +AT P P   +     +    I +   T + 
Sbjct: 157 ADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQH 216

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    +   + P  R   +I  L  +  + + +   C         + R  V+   S   
Sbjct: 217 ADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRLS 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 266 NRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
              LH+  GR GR     +C+L+   P S+
Sbjct: 326 DTLLHR-SGRTGRAGRKGTCVLVV--PFSR 352


>gi|119944643|ref|YP_942323.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119863247|gb|ABM02724.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 439

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 148/320 (46%), Gaps = 37/320 (11%)

Query: 302 VGSGKTLVALI-AMA------AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L+ AM       A  +   + +I+ P   LA+Q Y  ++    NT +   +
Sbjct: 47  TGSGKTLAYLLPAMQRVLKTRALTKRDPRVLILTPTRELAKQVYAQLRLLVSNTSLKSTL 106

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR---F 406
           ++G      + KAL++      H ++GT     D ++        L L+I+DE  R    
Sbjct: 107 VSGGENFNDQVKALDK----DPHFVVGTPGRIVDHLKKGLLHLEGLELLILDEADRMLDL 162

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           G  ++LK    A A H L  T       L   +LG  ++++   +   + P++  I   N
Sbjct: 163 GFAEQLKAVNSA-ANHRLRQT------LLFSATLGHAEVNEFASELL-KAPVRIAIGEEN 214

Query: 467 RI-DEVIERLKVV--LSEGKKAYWICPQIEEKKE----SNFRSVVERFNS-LHEHFTSSI 518
           +   E+ +R  +   L++ +K  +   + EE K+    +  R   +R ++ L E    ++
Sbjct: 215 QQHSEISQRFYLADNLNQKEKLLFHFIKNEEIKQAIIFTATRLDAQRLSAALSEKGYGTL 274

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+ HG ++  ++ S+MDSF  G  +LL+ T +   G+D+++ S +I  +        +H+
Sbjct: 275 AL-HGDLTQNNRNSIMDSFSRGKAQLLVTTDIASRGLDLLNVSHVINFDIPKHTEEYIHR 333

Query: 579 LRGRVGRGEEISSCILLYHP 598
           + GR GR  E    I +  P
Sbjct: 334 I-GRTGRAGEKGDAISIIGP 352


>gi|329120997|ref|ZP_08249628.1| primosome assembly protein PriA [Dialister micraerophilus DSM
           19965]
 gi|327471159|gb|EGF16613.1| primosome assembly protein PriA [Dialister micraerophilus DSM
           19965]
          Length = 787

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 7/135 (5%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q + +K+IL+ + +      +L+G  GSGKT V L A    +   G  +I+ P   +  Q
Sbjct: 264 QNNVLKNILKKIKENKYSGILLKGVTGSGKTEVYLRATENVLLNNGTVLILVPEISMTDQ 323

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKL 395
              +  +Y  +  + +     N+ ++ R     RI +G+A IIIG+  ALF   + +  L
Sbjct: 324 IISYFTEYFGSNIVFMH---SNLNKSERYNNRMRIQNGEARIIIGSRSALF---MPFNNL 377

Query: 396 ILVIVDEQHRFGVQQ 410
            L+IVDE++ F  +Q
Sbjct: 378 KLIIVDEEYDFSYKQ 392


>gi|239995610|ref|ZP_04716134.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
          Length = 483

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 143/343 (41%), Gaps = 58/343 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT-------LVALIAMAAAVEAGGQA 324
           +P+  QE AI ++LQ       +L   Q   G+GKT       L  L+          +A
Sbjct: 23  TPSPIQEKAIPEVLQGKD----VLAAAQ--TGTGKTAGFGLPILQRLMEGQPVSGNNVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHIII 380
           +I+ P   LA Q  E I+ +++   +   ++ G +   PQ  + RK ++        ++I
Sbjct: 77  LILTPTRELAAQVEESIRAFSEFLPLKTAVVFGGVGINPQMMKLRKGVD--------VLI 128

Query: 381 GTHALF-----QDSIQYYKLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTA 428
            T         Q+++++ +L ++++DE  R         +++ LKL              
Sbjct: 129 ATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIRRVLKLL------------- 175

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  R  +L S    D      K   R P+     P N   E +++  V + + KK   +
Sbjct: 176 -PQERQSLLFSATFSDEITALAKTITRNPVSISTAPANTTVEAVQQHLVTIDKSKKTTAL 234

Query: 489 CPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTC 542
              I+++K      F       N + E  T S    A IHG  S   +   +  FKNG  
Sbjct: 235 ICLIKQQKWEQVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGAI 294

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           K+L+AT +   GID+ +  I++  +  +     +H++ GR GR
Sbjct: 295 KVLVATDIAARGIDISELPIVVNLDLPNTAADYVHRI-GRTGR 336


>gi|206603692|gb|EDZ40172.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 444

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 140/345 (40%), Gaps = 34/345 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           SPT  Q+ +I  ++        +L I Q   G+GKT   L+ +   +  G       +A+
Sbjct: 23  SPTPIQKQSIPHVIDGRD----LLGIAQ--TGTGKTGGFLLPVLHKIAEGRRHGIRNRAL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +++P   LA Q ++  K Y +       ++ G +    + + L+R       I++ T   
Sbjct: 77  VLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLKR----NWDIVVATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPR-- 433
             D ++   L L     VI+DE  R     F       + Q       LL +AT  PR  
Sbjct: 133 LLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQSLLFSATCPPRIQ 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L  T   D  I ++  +  G   I    I ++   + +  LK VL EGK          
Sbjct: 193 ELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLDEGKSETGQVIIFT 252

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             K    RS  +   +L++    S A+ HG  S   +  V+  F+ G  K+L+AT V   
Sbjct: 253 RTK----RSAEDLSIALNDAGYPSDAL-HGDKSQPVRNRVLSRFRRGDLKVLVATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   + +I  +        +H++ GR GR       +  +HP
Sbjct: 308 GLDIDGITHVINYDLPQTAEDYVHRI-GRTGRAGRTGRALSFFHP 351


>gi|253575100|ref|ZP_04852439.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845556|gb|EES73565.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 410

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 141/348 (40%), Gaps = 48/348 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGGQ-- 323
           +PT  Q+ AI  IL        +L   Q   G+GKT       + L+    A  AG +  
Sbjct: 23  APTPIQQQAIPPILSGQD----LLGCAQ--TGTGKTAAFAIPTLQLLHKDGAPRAGRRNI 76

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   LA Q YE    Y +   +   +I G + Q  +  AL++       I++ T
Sbjct: 77  RALVITPTRELALQIYENFCAYGKYLPLKCAVIFGGVSQKPQEAALQK----GVDILVAT 132

Query: 383 HALFQDSIQYYKLI------LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
                D +Q  KLI      L+I+DE  R      +   +K       ++  TP  R  +
Sbjct: 133 PGRLNDLMQQ-KLIDLKNVELLILDEADRMLDMGFIHDVKK-------IIAKTPSQRQTL 184

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC-----PQ 491
           L S    D          R P+K  I P++   + I +    + +G K   +      P 
Sbjct: 185 LFSATMPDAIAQMADSILRNPVKVEITPVSSTVDTIGQYLYYVDKGNKRDLLIHLLKDPS 244

Query: 492 IEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           IE      F       + L  H T    S   IHG  S   +++ +  FKN T ++L+AT
Sbjct: 245 IES--AIVFTRTKHGADRLVRHLTKAQVSAKAIHGDKSQGARQTALQDFKNRTLRVLVAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
            +   GID+ + S +I     +     +H++ GR GR    G  IS C
Sbjct: 303 DIAARGIDIDELSHVINYELPNIPETYVHRI-GRTGRAGQSGVAISFC 349


>gi|227829832|ref|YP_002831611.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.S.2.15]
 gi|227456279|gb|ACP34966.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.S.2.15]
          Length = 360

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 135/336 (40%), Gaps = 42/336 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
           PT+ QE  I +++   S       I+Q   GSGKT   +I +   +E    A+I++P   
Sbjct: 38  PTRVQEVVIPELMNGKSV------IVQAKTGSGKTAAYVIPI---LERNSTALILSPTRE 88

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD---- 388
           LA Q  + IKK  +  QI V +I G M    +R         Q+ I++GT     D    
Sbjct: 89  LATQILDEIKKLGKYKQIDVSLIIGGMSYDDQR---------QSKIVVGTPGRLLDLWSK 139

Query: 389 -SIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
             I +     VIVDE  R    G    +++        +    +  IP  ++  +     
Sbjct: 140 GKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIAGFFSATIPDEIMTLA----- 194

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSV 503
                 K   +   + V+     ++EV ++ +KV      K   +  +I  +K   F   
Sbjct: 195 ------KEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLLEEINGEKILVFART 248

Query: 504 VERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            +R   L+        ++ ++ G M    +      FK G   +L+AT +   GID++D 
Sbjct: 249 RDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATDLASRGIDIIDV 308

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           + +I  +        +H++ GR GR   +   I  Y
Sbjct: 309 NKVINFDIPRDVETYIHRV-GRTGRMGRVGQAITFY 343


>gi|323474157|gb|ADX84763.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           REY15A]
 gi|323476770|gb|ADX82008.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           HVE10/4]
          Length = 360

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 140/337 (41%), Gaps = 44/337 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
           PT+ QE  I +++   S       I+Q   GSGKT   +I +   +E    A+I++P   
Sbjct: 38  PTRVQEVVIPELMNGKSV------IVQAKTGSGKTAAYVIPI---LERNSTALILSPTRE 88

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD---- 388
           LA Q  + IKK  +  QI V +I G M    +R         Q+ I++GT     D    
Sbjct: 89  LATQILDEIKKLGKYKQIDVSLIIGGMSYDDQR---------QSKIVVGTPGRLLDLWSK 139

Query: 389 -SIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
             I +     VIVDE  R    G    +++        +    +  IP           +
Sbjct: 140 GKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIAGFFSATIPD----------E 189

Query: 445 ISKITEKPAGRKPIKTVIIPINR-IDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRS 502
           I  + E+ +  K ++ +++   + ++EV ++ +KV      K   +  +I  +K   F  
Sbjct: 190 IMTLAEEFS--KDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLLEEINGEKILVFAR 247

Query: 503 VVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +R   L+        ++ ++ G M    +      FK G   +L+AT +   GID++D
Sbjct: 248 TRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATDLASRGIDIID 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            + +I  +        +H++ GR GR   +   I  Y
Sbjct: 308 VNKVINFDIPRDVETYIHRV-GRTGRMGRVGQAITFY 343


>gi|313891976|ref|ZP_07825577.1| primosomal protein N' [Dialister microaerophilus UPII 345-E]
 gi|313119619|gb|EFR42810.1| primosomal protein N' [Dialister microaerophilus UPII 345-E]
          Length = 787

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 7/135 (5%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q + +K+IL+ + +      +L+G  GSGKT V L A    +   G  +I+ P   +  Q
Sbjct: 264 QNNVLKNILKKIKENKYSGILLKGVTGSGKTEVYLRATENVLLNNGTVLILVPEISMTDQ 323

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKL 395
              +  +Y  +  + +     N+ ++ R     RI +G+A IIIG+  ALF   + +  L
Sbjct: 324 IISYFTEYFGSNIVFMH---SNLNKSERYNNRMRIQNGEARIIIGSRSALF---MPFNNL 377

Query: 396 ILVIVDEQHRFGVQQ 410
            L+IVDE++ F  +Q
Sbjct: 378 KLIIVDEEYDFSYKQ 392


>gi|91792775|ref|YP_562426.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714777|gb|ABE54703.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 468

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 131/324 (40%), Gaps = 45/324 (13%)

Query: 302 VGSGKTLVAL-------IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L       I+  A  +   + +I+ P   LAQQ Y  ++    NTQ     
Sbjct: 58  TGSGKTLAFLLPAMQRIISTKALSKRDPRVLILLPTRELAQQVYGQLRLLVANTQYKAVS 117

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR---F 406
           I G      + KAL R    + H I+ T     D +Q        L L+I+DE  R    
Sbjct: 118 ILGGENFNDQAKALSR----EPHFIVATPGRIADHLQQRHLHLNGLELLILDEADRMLDL 173

Query: 407 GVQQRLKLTQKATAPH----VLLMTAT-------PIPRTLVLTSLGDIDISKITEKPAGR 455
           G   +L     A A H     L+ +AT        I  TL L S   I I     + A  
Sbjct: 174 GFAPQLAAIN-AAADHKRRQTLMFSATLEHDEINEIAATL-LKSPNHIAIGAAYTEHAD- 230

Query: 456 KPIKTVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
             I   II ++ +D     L+ VL+ E  K   I         +  R   ER  SL    
Sbjct: 231 --ITQRIILVDHLDHKQALLEHVLTNETNKQIIIF--------TATRVDTERLASLLADK 280

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + A + G ++   +  +MD F  G  ++L+ T V   G+D+++ S++I  +   F   
Sbjct: 281 GFATAALSGNLNQGARNQIMDQFARGQKQILVTTDVASRGLDLINVSLVINFDMPKFAEE 340

Query: 575 QLHQLRGRVGRGEEISSCILLYHP 598
            +H++ GR GR       + L  P
Sbjct: 341 YVHRI-GRTGRAGAKGDAVSLVGP 363


>gi|254480020|ref|ZP_05093268.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039582|gb|EEB80241.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 440

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 128/308 (41%), Gaps = 38/308 (12%)

Query: 301 DVGSGKTLVALIA-----MAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + GSGKT+  L+      ++A +  +AG  AV++ P   LA+Q  +  +   Q TQ+  +
Sbjct: 45  ETGSGKTVAYLLPTLQRILSAPINRKAGALAVVLVPTRELARQVQKNCRDLMQKTQLGAQ 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHRF-- 406
            ITG     ++R  L +       +II T         + S     L  +I+DE  R   
Sbjct: 105 AITGGADFKYQRALLRK----NPELIIATPGRLLEHCEKGSADLGSLQTLILDEADRMLD 160

Query: 407 -GVQQR-LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            G +   +KL     A   ++M    +  TL    LG +       K   R P    +  
Sbjct: 161 MGFRDDVMKLASFCGAERQVIM----LSATLKHKGLGGV------AKDLLRDPQTIEVSE 210

Query: 465 INRIDEVIERLKVVL-SEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSS 517
             +    I   +++  S+  K   +C  +++   +      N R+  +R   L  H    
Sbjct: 211 FRQPHSSIHHQRILADSQEHKDKLLCALMDKGGFTRALVFANKRTTAQRLAGLLSHHGLR 270

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              +HG MS  +++ VM  F++    ++ A+ V   G+DV D  +++  +    G   LH
Sbjct: 271 CGCLHGEMSTEERKHVMTQFRDSKVDMVCASDVAARGLDVKDIDLVVNYDLPQKGDDYLH 330

Query: 578 QLRGRVGR 585
           +  GR GR
Sbjct: 331 RT-GRTGR 337


>gi|182420435|ref|ZP_02951654.1| primosomal protein N' [Clostridium butyricum 5521]
 gi|237668758|ref|ZP_04528742.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182375721|gb|EDT73321.1| primosomal protein N' [Clostridium butyricum 5521]
 gi|237657106|gb|EEP54662.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 730

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 92/445 (20%), Positives = 172/445 (38%), Gaps = 109/445 (24%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T+ QE  +  IL  +  K     +++G  GSGKT V +  ++  +  G  AV++ P I +
Sbjct: 200 TQEQEHCLDTILNGIELK----YLIKGVTGSGKTEVYMNLVSETLNEGKSAVVLVPEISL 255

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F  ++  +    V +    +    R     RI  G+A ++IG   ALF   + 
Sbjct: 256 TPQMIERFKGRFGGD----VALFHSRLSDGERFDEWYRIRDGKARLVIGARSALF---LP 308

Query: 392 YYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
              L L+I+DE+H          ++  ++  +   K     ++L +ATP   T      G
Sbjct: 309 LDNLGLIIIDEEHENTYKSDQNPKYHTREVSEYMCKLKGCKLVLGSATPSIETYYKALSG 368

Query: 442 DIDISKITEKPAGRKPIKTVIIPI-----------------NRIDEVIERLK-VVLSEGK 483
           +  + ++  +  GR      I+ +                 N IDE + R K ++L   +
Sbjct: 369 EYKLIEMKSRVNGRAMPHMEIVDMREELKRRNLSLFSGKLYNAIDETLNRKKQIILFLNR 428

Query: 484 KAYW------------------------------------------ICPQIEEKKESNFR 501
           + Y                                           ICP+   +    F 
Sbjct: 429 RGYSTFISCRSCGYVFKCPECDVSMTYHNNGYLICHYCGRAEKVSKICPECGSRYVKFFG 488

Query: 502 SVVERFN-SLHEHFTSSIAIIHGRMSDIDK-------ESVMDSFKNGTCKLLIATTVIEV 553
           +  ER    + ++F  +  +   RM D+D        ES+ +SFKNG   +L+ T ++  
Sbjct: 489 AGTERVELEVKKYFPKARVL---RM-DVDTTRHKNSHESIYNSFKNGEADILVGTQMVSK 544

Query: 554 GIDVVDASIIIIENAE------HFGLAQ-----LHQLRGRVGRGEEISSCILLYHPPLSK 602
           G+D  + +++ +  A+       +  A+     + Q+ GR GRG +    I+  + P   
Sbjct: 545 GLDFKNVTLVGVLAADMSLNIPDYRSAERTYQIITQVAGRAGRGNDEGEVIVQSYTP--- 601

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQ 627
           N Y+     +   +G    E +L++
Sbjct: 602 NHYSLNYAKEENYEGLFKEEINLRR 626


>gi|164658139|ref|XP_001730195.1| hypothetical protein MGL_2577 [Malassezia globosa CBS 7966]
 gi|159104090|gb|EDP42981.1| hypothetical protein MGL_2577 [Malassezia globosa CBS 7966]
          Length = 480

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 148/338 (43%), Gaps = 48/338 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+K QE A+  +LQ+  +      I Q   G+GKT   ++ M + ++      QA+ +AP
Sbjct: 110 PSKIQERALPLLLQNPPRN----MIGQSQSGTGKTAAFVLTMLSRIDFSVDKPQALALAP 165

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  + +++  + T +        +P A +R   E++   QAH+++GT     D 
Sbjct: 166 SRELARQIMDVVQEMGKYTPVKTAFA---IPDAMKRG--EKV---QAHLVVGTPGKTFDL 217

Query: 390 IQYYKLI-----LVIVDE------QHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLV 436
           I+   L      + ++DE      Q   G Q  R+K T   T   VL     P   RT  
Sbjct: 218 IKTRALDPSGVKVFVLDEADNMLDQQGLGEQSIRVKNTMPKTCQLVLFSATFPEHVRTFA 277

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRID---EVIERLKVVLSEGKKAYWICPQIE 493
           +    + +  ++ ++    + I+   +     +   EV+  L  +L+ G+   +      
Sbjct: 278 VKFAPNANEIRLKQEELSVESIRQFYMDCKTEEHKYEVLVELYNLLTIGQSIIFCA---- 333

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             K      + +R  +      S    +HG++    ++  +D F++G CK+LIAT VI  
Sbjct: 334 --KRDTADKIAQRMTAEGHRVDS----LHGKLDTAARDRTIDEFRSGKCKVLIATNVIAR 387

Query: 554 GIDVVDASIII------IENAEHFGLAQLHQLRGRVGR 585
           GID+   +++I       +  +      LH++ GR GR
Sbjct: 388 GIDIQQVTLVINYDMPLTQQGDPDAETYLHRI-GRTGR 424


>gi|218889195|ref|YP_002438059.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa LESB58]
 gi|218769418|emb|CAW25178.1| RNA helicase DbpA [Pseudomonas aeruginosa LESB58]
          Length = 458

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 142/331 (42%), Gaps = 56/331 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I Q   GSGKT    +A+ + +     G QA+++ P   LA Q  + I++  +    I V
Sbjct: 45  IAQAKTGSGKTAAFGLALLSPLNPRYFGCQALVLCPTRELADQVAKEIRRLARAADNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P   +  +LE   HG AH+++GT    Q+ ++   L+L     +++DE  R  
Sbjct: 105 LTLCGGVPYGPQVASLE---HG-AHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRML 160

Query: 407 --GV------------QQRLKLTQKATAP---HVLLMTATPIPRTLVLTSL-GDIDISKI 448
             G             ++R  L   AT P     L  T    PR + + SL  D  I + 
Sbjct: 161 DMGFYDSIAEIIGQLPERRQTLLFSATYPDGIEKLAKTFMRDPRQVRVESLHADSQIEQR 220

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             +          I P  R+D V+  L+    +   A+  C   ++ +E          +
Sbjct: 221 FFE----------IDPKQRMDAVVRLLQHFRPQSSVAF--CQTRQQCQELA--------D 260

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +L     S++A+ HG +   +++ V+  F N +C +L+AT V   G+D+     +I  N 
Sbjct: 261 ALKAQRISALAL-HGDLEQRERDQVLTVFANRSCNVLVATDVAARGLDIAALETVI--NV 317

Query: 569 EHFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
           E     ++H  R GR GR  E    + L  P
Sbjct: 318 ELARDPEVHIHRIGRSGRAGEKGLALSLVAP 348


>gi|254500508|ref|ZP_05112659.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
 gi|222436579|gb|EEE43258.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
          Length = 480

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 146/341 (42%), Gaps = 52/341 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI  +L+    +  +L I Q   G+GKT    + M   +E G       + +I
Sbjct: 24  PTAIQAGAIPQVLE----RRDVLGIAQ--TGTGKTASFTLPMLTLLEKGRARARMPRTLI 77

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  ++Y  N ++ V ++ G +  A + K L+R       ++I T    
Sbjct: 78  LEPTRELAAQVQENFERYGTNHKLNVALLIGGVSFAEQDKKLDR----GTDVLIATPGRL 133

Query: 387 QDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLTS 439
            D  +  KL+L     +++DE  R        +      P +  +    P  R TL  ++
Sbjct: 134 LDHFERGKLLLQGVEILVIDEADR--------MLDMGFIPDIERICKLIPFTRQTLFFSA 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKE- 497
               +I ++TE    + P +  + P +   E V ++LK    +         ++ E  E 
Sbjct: 186 TMPPEIQRLTETFL-QNPARIEVAPTSSTAENVTQQLKAAGGKDYDKRVALRELLEGAED 244

Query: 498 --------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   +  R +   F SL  H   ++  +HG M    +  ++++F+ G  KLL+A+ 
Sbjct: 245 LQNAIVFCNRKRDISTLFRSLERH-EYNVGALHGDMDQRTRMMMLENFRKGAIKLLVASD 303

Query: 550 VIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRG 586
           V   G+D+ + S +    +  NAE +    +H++ GR GR 
Sbjct: 304 VAARGLDIPEVSHVFNYDVPINAEDY----VHRI-GRTGRA 339


>gi|197334916|ref|YP_002157069.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Vibrio fischeri MJ11]
 gi|197316406|gb|ACH65853.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Vibrio fischeri MJ11]
          Length = 733

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 165/418 (39%), Gaps = 97/418 (23%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   ++AG QA+I+ P IG+  Q     I ++ +   + V++I
Sbjct: 221 LLEGVTGSGKTEVYLQLLEPILKAGRQALILVPEIGLTPQT----INRFKRRFNVPVDVI 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              +    R  A        A IIIGT  ALF     ++ L ++IVDE+H    +Q+  +
Sbjct: 277 HSGLNDTERLNAWLAARDNHAGIIIGTRSALF---TPFHDLGIIIVDEEHDASYKQQDSM 333

Query: 415 TQKATAPHVL----------LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
              A    V+          L +ATP   TL   ++G      +T++     P +  ++ 
Sbjct: 334 RYHARDLAVMRANLDNIPIILGSATPALETLHNANVGKYHHLTLTKRAGTAIPARHGVLD 393

Query: 465 INRI-------DEVIERLKVVLSEGKKAYWI--------------CPQIEEKKESN-FRS 502
           +  +         +I +++  LSEG +                  C  + E K  + F +
Sbjct: 394 VKGLYLNSGLSAPLIAQMRKHLSEGNQVMLFLNRRGFSPALMCHECGWMAECKRCDAFYT 453

Query: 503 VVERFNSLH-EHFTSSIAIIHG------------------------------RMSDIDKE 531
             +  N +   H  S   IIH                               +   ID++
Sbjct: 454 FHQHSNEIRCHHCGSQQPIIHQCQGCGSTQLISVGVGTEQLETQLTNLFPEYKTVRIDRD 513

Query: 532 SV---------MDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHFG 572
           S          +++ KN   ++LI T ++           VG+  VD+S+   +      
Sbjct: 514 STRRKGSLEDYLEAIKNNEYQILIGTQMLAKGHHFPNVTLVGLIDVDSSLFSSDFRAPER 573

Query: 573 LAQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
           LAQL  Q+ GR GR  +    IL  H P     ++ L  L +   G   AE  LK+RK
Sbjct: 574 LAQLFIQVAGRAGRASKPGEVILQTHHP----EHSLLQSLLHHGYGHF-AEHALKERK 626


>gi|59712881|ref|YP_205657.1| primosome assembly protein PriA [Vibrio fischeri ES114]
 gi|59480982|gb|AAW86769.1| Primosome factor n' (replication factor Y) [Vibrio fischeri ES114]
          Length = 737

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 167/422 (39%), Gaps = 97/422 (22%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   ++AG QA+I+ P IG+  Q     I ++ +   + V++I
Sbjct: 225 LLEGVTGSGKTEVYLQLLEPILKAGRQALILVPEIGLTPQT----INRFKRRFNVPVDVI 280

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              +    R  A        A IIIGT  ALF     ++ L ++IVDE+H    +Q+  +
Sbjct: 281 HSGLNDTERLNAWLAARDNHAGIIIGTRSALF---TPFHDLGIIIVDEEHDASYKQQDSM 337

Query: 415 TQKATAPHVL----------LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
              A    V+          L +ATP   TL   ++G      +T++     P +  ++ 
Sbjct: 338 RYHARDLAVMRANLDNIPIILGSATPALETLHNANVGKYHHLTLTKRAGTAIPARHGVLD 397

Query: 465 INRI-------DEVIERLKVVLSEGKKAYWI--------------CPQIEEKKESN-FRS 502
           +  +         +I +++  LSEG +                  C  + E K  + F +
Sbjct: 398 VKGLYLNSGLSAPLIAQMRKHLSEGNQVMLFLNRRGFSPALMCHECGWMAECKRCDAFYT 457

Query: 503 VVERFNSLH-EHFTSSIAIIHG------------------------------RMSDIDKE 531
             +  N +   H  S   IIH                               +   ID++
Sbjct: 458 FHQHSNEIRCHHCGSQQPIIHQCQGCGSTQLISVGVGTEQLETQLTNLFPEYKTVRIDRD 517

Query: 532 SV---------MDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHFG 572
           S          +++ KN   ++LI T ++           VG+  VD+S+   +      
Sbjct: 518 STRRKGSLEDYLEAIKNNEYQILIGTQMLAKGHHFPNVTLVGLIDVDSSLFSSDFRAPER 577

Query: 573 LAQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           LAQL  Q+ GR GR  +    IL  H P     ++ L  L +   G   AE  LK+RK  
Sbjct: 578 LAQLFIQVAGRAGRASKPGEVILQTHHP----EHSLLQSLLHHGYGHF-AEHALKERKFA 632

Query: 632 EI 633
           ++
Sbjct: 633 QL 634


>gi|15898685|ref|NP_343290.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|284175881|ref|ZP_06389850.1| ATP-dependent RNA helicase [Sulfolobus solfataricus 98/2]
 gi|13815150|gb|AAK42080.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|261603175|gb|ACX92778.1| DEAD/DEAH box helicase domain protein [Sulfolobus solfataricus
           98/2]
          Length = 343

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 137/339 (40%), Gaps = 48/339 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
           PTK QE  I ++L   S       I Q   GSGKT   +I +   +E    A+I++P   
Sbjct: 21  PTKVQEVVIPELLNGKSV------IAQAKTGSGKTAAYVIPI---LERNSTALILSPTRE 71

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD---- 388
           LA Q  + I+K  +  QI V +I G M    +R         Q+ I++GT     D    
Sbjct: 72  LATQILDEIRKLGKYKQIDVSLIIGGMSYDGQR---------QSRIVVGTPGRLLDLWSK 122

Query: 389 -SIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
             I +    ++IVDE  R    G    +++    +   +    +  IP  +         
Sbjct: 123 GKIDFSGYDVIIVDEADRMLDMGFIDDIRMILNHSNAKITGFFSATIPDEI--------- 173

Query: 445 ISKITEKPAGRKPIKTVII----PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
              +T      K ++ +++    P+  + ++  +++   S+  K   +  +I  +K   F
Sbjct: 174 ---MTLAKEFSKDLREIVLDEYKPVEEVKQIFVKVRNDWSD--KVSKLLEEISGEKILVF 228

Query: 501 RSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
               +R   L+        ++ ++ G M    +      FK G   +L+AT +   GID+
Sbjct: 229 ARTRDRARKLYFLLRGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATDLASRGIDI 288

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           VD   +I  +        +H++ GR GR   +   +  Y
Sbjct: 289 VDVDKVINFDIPRDVETYIHRV-GRTGRMGRVGQAVTFY 326


>gi|23501038|ref|NP_697165.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|254705304|ref|ZP_05167132.1| DEAD-box ATP dependent DNA helicase [Brucella suis bv. 3 str. 686]
 gi|261756015|ref|ZP_05999724.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|23346903|gb|AAN29080.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
 gi|261745768|gb|EEY33694.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
          Length = 626

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 42/330 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     +HI++GT    +D I        Q   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GSHIVVGTPRRLRDHITRNALDMSQLRAIVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD----IDISKITEKP 452
            DE    G ++ L+  L +       L+ +AT P P   +     +    I +   T + 
Sbjct: 157 ADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQH 216

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    +   + P  R   +I  L  +  + + +   C         + R  V+   S   
Sbjct: 217 ADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRLS 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 266 NRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
              LH+  GR GR     +C+L+   P S+
Sbjct: 326 DTLLHR-SGRTGRAGRKGTCVLVV--PFSR 352


>gi|268319152|ref|YP_003292808.1| ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785]
 gi|262397527|emb|CAX66541.1| ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785]
          Length = 409

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 126/305 (41%), Gaps = 24/305 (7%)

Query: 302 VGSGKTLV-ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G+GKTL   L  M    E GG+ +I+ P   LA Q    +  Y ++  +    + G   
Sbjct: 41  TGTGKTLAYGLPVMERIAEIGGRGIILEPTTELAIQTRNNLLPYAKSLGLKTIALVG--- 97

Query: 361 QAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
             +R++ LER+   +  III T   F     ++ I+Y  +  +++DE        +L L 
Sbjct: 98  AGNRKRQLERLKKEKPEIIIATSGRFFDFLSENRIKYQDINALVIDEADDILEFTKLDLL 157

Query: 416 QK-----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
                  ++   +LL  A+    T     L +     I  +P  +  +K   + ++  +E
Sbjct: 158 SSLGQNLSSTAQILLFGASESEITKDAEDLFNHTFLLIDVRPEQKSEVKHYFLQVS--NE 215

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
              +    L++  K   I     +  ES       RF  +  H  +  A++   +S  ++
Sbjct: 216 YKMQFLQRLAKLDKFKGIL--FFDSTESEM-----RFARIFSHSKTKFAVLSNEISKQNR 268

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E ++  F+ G  K L AT +   G+D+ D S +I           LH+  GR GR  +  
Sbjct: 269 EKILSDFRAGRIKFLFATDLAARGLDLPDVSYVINFEIPSEVNTYLHR-SGRTGRMNKSG 327

Query: 591 SCILL 595
           + + L
Sbjct: 328 TVVTL 332


>gi|261867133|ref|YP_003255055.1| primosome assembly protein PriA [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412465|gb|ACX81836.1| primosomal protein N' [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 746

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 100/208 (48%), Gaps = 28/208 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   ++ G Q +++ P IG+  Q     ++++     ++++++
Sbjct: 235 LLDGVTGSGKTEIYLQFIEDILQQGKQVLVLVPEIGLTPQT----VRRFQARFNVVIDVL 290

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
             N+    R +  +R  +GQ+ ++IGT  ALF    Q+ +L  +I+DE+H    +Q+   
Sbjct: 291 HSNLNDTQRLQVWQRARNGQSAVVIGTRSALF---TQFAELGAIIIDEEHDASFKQQDGW 347

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                   +   ++   P +L+ +ATP   +L     G      ++EK      +K  II
Sbjct: 348 RYHARDLAIVYAKQLNIP-ILMGSATPSLESLNNVQSGKYRHLSLSEKANNSTALKQQII 406

Query: 464 PINR-------IDEVIERLKVVLSEGKK 484
            + R        D +++R++  L +G +
Sbjct: 407 DLKRQPIHNGLSDVLLKRMQAHLEKGNQ 434


>gi|205375157|ref|ZP_03227948.1| DEAD-box ATP dependent DNA helicase [Bacillus coahuilensis m4-4]
          Length = 398

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 139/321 (43%), Gaps = 43/321 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNT--QII 351
           I Q   GSGKTL  ++ M   V+      Q +I+AP   LA Q  + +KK  +    ++ 
Sbjct: 43  IAQAKTGSGKTLAFILPMLEKVDLEKIAVQGLIVAPTRELAIQVTDELKKLVELEFPEVN 102

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
           V  + G        K L ++     HI++ T     D     +I   +L ++I+DE    
Sbjct: 103 VLAVYGGQ---DVEKQLHKLETRNIHIVVATPGRLLDHMRRGTIDLSELDMLILDE---- 155

Query: 407 GVQQRLKLTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGR---KPIKTVI 462
              Q L +      P V  ++ ATP  R    T+L    ISK     A R   +P    +
Sbjct: 156 -ADQMLHI---GFLPEVEQIIEATPPTRQ---TALFSATISKDVRTLAKRYQQQPYTVQV 208

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS-- 517
               R+ E IE+  V  ++ KK   +   I+E +      F   + R + LH    +   
Sbjct: 209 KDKERLVEEIEQFVVETTDRKKLQALVEVIKETQPFMGIIFCRTIRRVSKLHMELKAKGF 268

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFG 572
            +  +HG +S   +E+VM  F++   +LLIAT V   G+DV   + +    I ++ E + 
Sbjct: 269 LVDELHGDLSQAKRENVMKRFRDAKIQLLIATDVAARGLDVEGVTHVYNYDIPQDVESY- 327

Query: 573 LAQLHQLRGRVGRGEEISSCI 593
              +H++ GR GR  E    I
Sbjct: 328 ---IHRI-GRTGRAGETGMAI 344


>gi|194761004|ref|XP_001962722.1| GF15595 [Drosophila ananassae]
 gi|190616419|gb|EDV31943.1| GF15595 [Drosophila ananassae]
          Length = 389

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 122/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q    +    +  ++   
Sbjct: 57  IAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSH 116

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-------QYYKL-ILVIVDEQHR 405
              G      R  A  RI     H+++GT     D I       QY KL +L   DE   
Sbjct: 117 ACIGGTNV--REDA--RILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLS 172

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + +++   K   P   V+L++AT  P  L ++            +   R+P+    I
Sbjct: 173 RGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVS------------RCFMREPVS---I 217

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      K+  W    + +  ++          N R  V++       
Sbjct: 218 LVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSS 277

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   D+E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 278 HNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 328


>gi|225858570|ref|YP_002740080.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           70585]
 gi|225721139|gb|ACO16993.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           70585]
 gi|301793920|emb|CBW36316.1| putative helicase [Streptococcus pneumoniae INV104]
          Length = 447

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 155/352 (44%), Gaps = 38/352 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + F+ PT+ Q+  I  +L       R L + +   GSGKT   L+ +   ++     
Sbjct: 16  LKELKFTTPTEVQDKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDEASDS 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHII 379
            QAVI AP   LA Q Y+  ++ + ++ + V ++   G   +A   + +E++A  Q HI+
Sbjct: 70  VQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKA---RQIEKLASNQPHIV 126

Query: 380 IGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTAT 429
           IGT     D ++      +K    +VDE         L++  K           ++ +AT
Sbjct: 127 IGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLEIVDKIAGSLPKDLQFMVFSAT 186

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            IP+ L         + K    P   K IKT  +  + ID  +   K    +  + Y + 
Sbjct: 187 -IPQKLQPF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-HDKNAQIYQLT 237

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             ++      F +   R + LH + T+    +A IHG ++  +++ +M+  +N   + ++
Sbjct: 238 QLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 298 ATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|254282193|ref|ZP_04957161.1| primosomal protein N' [gamma proteobacterium NOR51-B]
 gi|219678396|gb|EED34745.1| primosomal protein N' [gamma proteobacterium NOR51-B]
          Length = 733

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 13/183 (7%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           I+  ++R+   K++ +   ++G  A       P  P+  Q+ AI  I   +        +
Sbjct: 171 ISTGIVRQLIAKDLAVRCQIDGNPAWNA--GPPLPPSSEQQEAISAIRDTLG--GYRCHL 226

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIIT 356
           L G  GSGKT V L A+A+ +    QA+++ P IG+  Q    F +++  +  I+V  + 
Sbjct: 227 LDGITGSGKTEVYLQAIASCIAGSRQALLLLPEIGLTPQMLARFKERF--DAPIVV--LH 282

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
             +    R +       G+A I+IGT  A+F   +   +  L+IVDE+H  G  Q+  L 
Sbjct: 283 SGLSDGERDRGWSAARAGKAAIVIGTRSAVF---VPLARPGLIIVDEEHDAGYSQQDGLR 339

Query: 416 QKA 418
             A
Sbjct: 340 YSA 342


>gi|167747884|ref|ZP_02420011.1| hypothetical protein ANACAC_02613 [Anaerostipes caccae DSM 14662]
 gi|167652706|gb|EDR96835.1| hypothetical protein ANACAC_02613 [Anaerostipes caccae DSM 14662]
          Length = 741

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 7/132 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            +SQE  I++   D +   R   +L G  GSGKT V L A+   V  G QA+++ P   L
Sbjct: 209 NESQEKLIQEFKADYAAGERKTYLLHGVTGSGKTEVYLAAIEEVVRKGKQAIVLIPEIAL 268

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
               Y+ + ++T+     V I+   + +  +     R  +G   IIIG   ALF   + +
Sbjct: 269 T---YQTVCRFTKRFGDRVSILNSRLSKGEKYDQWLRAKNGDCDIIIGPRSALF---VPF 322

Query: 393 YKLILVIVDEQH 404
             L L+I+DE+H
Sbjct: 323 PNLGLIIMDEEH 334


>gi|15603002|ref|NP_246074.1| primosome assembly protein PriA [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12721483|gb|AAK03221.1| PriA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 737

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 9/138 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   ++ G Q +++ P IG+  Q    F+ ++    Q++++++
Sbjct: 226 LLDGVTGSGKTEIYLQLIEEVLKKGKQILVLVPEIGLTPQTVQRFVARF----QVVIDVL 281

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
             N+    R    +R   GQ+ I+IGT  ALF    Q+  L L+++DE+H    +Q+   
Sbjct: 282 HSNLNDTQRLAVWQRARTGQSAIVIGTRSALF---TQFADLGLIVIDEEHDASFKQQDNF 338

Query: 415 TQKATAPHVLLMTATPIP 432
              A    V+L     IP
Sbjct: 339 RYHARDLSVVLAKQLNIP 356


>gi|260892749|ref|YP_003238846.1| primosomal protein N' [Ammonifex degensii KC4]
 gi|260864890|gb|ACX51996.1| primosomal protein N' [Ammonifex degensii KC4]
          Length = 730

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 75/149 (50%), Gaps = 12/149 (8%)

Query: 269 IPFSP-------TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            PF+P       T +Q  A+  + + +++K   + +L G  GSGKT V L A +  +  G
Sbjct: 183 FPFTPAETGLSLTPAQAKALSRVEEALNRKTPAVLLLHGVTGSGKTEVYLRAASLTLAQG 242

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++ P  +LA   Y+ ++++       V ++   + +  R  + +R+  G+A ++IG
Sbjct: 243 RQVIVLVPEIVLA---YQLVEQFRSRFGDRVAVLHSALGERERGTSWQRVERGEAPVVIG 299

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     +   +L L+++DE+H    +Q
Sbjct: 300 ARSAVFAPVS--RLGLIVLDEEHEPAYKQ 326


>gi|161618112|ref|YP_001591999.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella canis ATCC
           23365]
 gi|260567233|ref|ZP_05837703.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|161334923|gb|ABX61228.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella canis ATCC
           23365]
 gi|260156751|gb|EEW91831.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
          Length = 626

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 42/330 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     +HI++GT    +D I        Q   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GSHIVVGTPRRLRDHITRNALDMSQLRAIVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD----IDISKITEKP 452
            DE    G ++ L+  L +       L+ +AT P P   +     +    I +   T + 
Sbjct: 157 ADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQH 216

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    +   + P  R   +I  L  +  + + +   C         + R  V+   S   
Sbjct: 217 ADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRLS 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 266 NRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
              LH+  GR GR     +C+L+   P S+
Sbjct: 326 DTLLHR-SGRTGRAGRKGTCVLVV--PFSR 352


>gi|307706950|ref|ZP_07643749.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
 gi|307617664|gb|EFN96832.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
          Length = 447

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 138/315 (43%), Gaps = 31/315 (9%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT-- 356
            GSGKT   L+ +   ++      QAVI AP   LA Q Y+  ++   ++++ V ++   
Sbjct: 47  TGSGKTHTFLLPIFQQLDETSDSVQAVITAPSRELATQIYQAARQIAAHSEVEVRVVNYV 106

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQR 411
           G   +A   + +E++A  Q HI+IGT     D ++   L +      +VDE         
Sbjct: 107 GGTDKA---RQIEKLASNQPHIVIGTPGRIYDLVKSGDLAIHKANTFVVDEADMTLDMGF 163

Query: 412 LKLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           L+   K          +++ +AT IP+ L         + K    P   K IKT  +  +
Sbjct: 164 LETVDKIAGSLPKDLQLMVFSAT-IPQKLQPF------LKKYLSNPVMEK-IKTKTVISD 215

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHG 523
            ID  +   K    +  + Y +   ++      F +   R + LH + T+    +A IHG
Sbjct: 216 TIDNWLISTKG-RDKNAQIYQLTQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHG 274

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            ++  +++ +M+  KN   + ++AT +   GID+   S +I +         +H++ GR 
Sbjct: 275 DIAPRERKRIMNQVKNLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRT 333

Query: 584 GRGEEISSCILLYHP 598
           GR     + I LY P
Sbjct: 334 GRNGLPGTAITLYQP 348


>gi|152992308|ref|YP_001358029.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424169|dbj|BAF71672.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
          Length = 447

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 140/359 (38%), Gaps = 65/359 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV------- 325
           PT  Q+  I  +L   +       I     GSGKTL  L+     +    + V       
Sbjct: 24  PTPIQQKLIPALLDGQNA------IASAQTGSGKTLAYLLPALQQINPEAEKVTHHYPRL 77

Query: 326 -IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-- 382
            I++P   LAQQ YE  + +     + V ++ G      R    ER+  G   +II T  
Sbjct: 78  FILSPTKELAQQIYEVSRPFVNALDLNVVLLQGG---GRRTVETERLKKG-VDVIIATPQ 133

Query: 383 HALFQDSIQYYKLILV---IVDEQHRF------GVQQRLKLTQKATAPHVLLMTATPIPR 433
            AL     Q+  +  +   +VDE          G  +++  T        ++++AT  PR
Sbjct: 134 RALEHIEAQHIDIKAIRHLVVDEADMMFDMGFVGYLEKI-FTMMTERSQKIIVSATITPR 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI---------DEVIERLKVVLSEGKK 484
            + L                     KT I P+ RI         D + + L  VL   K+
Sbjct: 193 VIKLA--------------------KTYIKPLKRIELDPPGKIADTITQMLYPVLRSKKE 232

Query: 485 AY--WICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKN 539
           A   W+      +K   F    E  + + E   S    + I+HG  +  +++  +++F+ 
Sbjct: 233 ALLAWLISSGNYEKVLLFVRKKELADGVAESLRSWDYKVGILHGERTHQERKKSLNAFRE 292

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G  ++L+AT +   G+D+ D  ++I  +  H     +H++ GR GR       I L  P
Sbjct: 293 GRYRILVATDIAARGLDISDLDVVINYDIPHVKHDFIHRV-GRTGRAGREGIAITLVSP 350


>gi|284042564|ref|YP_003392904.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283946785|gb|ADB49529.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 481

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 149/347 (42%), Gaps = 35/347 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           LR++ + +P+  QE AI  +L      N M  I Q   GSGKT    + +   V+     
Sbjct: 17  LRDVGYENPSPIQEQAIPPLLA----GNDM--IGQAQTGSGKTAAFGLPLMEYVDPSDRD 70

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   L  Q  + ++ Y     I V  + G  P   ++  L   A GQ  I++G
Sbjct: 71  VQALVLTPTRELCIQVTQALRSYGARKGIDVVAVFGGAPIRSQQAQLR--AGGQ--IVVG 126

Query: 382 THALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TL 435
           T    +D I  + L+L     V++DE         L+  +K       ++  TP  R T 
Sbjct: 127 TVGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEK-------ILALTPGSRQTA 179

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I K++E+     P+   +       + +E+  + +S+  K   +   +E +
Sbjct: 180 LFSATMPPEIRKLSERYL-YNPVHVKVRAATLTVDTVEQFSLEMSQRDKPDMLGTVLESE 238

Query: 496 KESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           K      F     R + L+        ++  +HG MS   ++ VM SFK+G   +L+AT 
Sbjct: 239 KPDQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPILVATD 298

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           V   G+D+   + ++  +        +H++ GR GR       I  Y
Sbjct: 299 VAARGLDISSVTHVVNFDVPTSPDVYVHRI-GRTGRVGRSGRAITFY 344


>gi|188533798|ref|YP_001907595.1| ATP-dependent RNA helicase DbpA [Erwinia tasmaniensis Et1/99]
 gi|188028840|emb|CAO96702.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 459

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 132/331 (39%), Gaps = 60/331 (18%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIV 352
           Q   GSGKT    + +   V+A     QA+++ P   LA Q       + ++T N +I+ 
Sbjct: 46  QAKTGSGKTAAFGLGVMHRVDASQYVTQALVLCPTRELADQVTKELRRLARFTANIKILT 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G  P   +R +L    H   HI++GT     D ++   L L     +++DE  R  
Sbjct: 106 --LCGGQPVGAQRDSL---LHA-PHIVVGTPGRILDHLKRETLKLDAITTLVLDEADRML 159

Query: 407 --------------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DISKITEK 451
                           QQR  L   AT P  +   +  I R  +    GD+ D+  I + 
Sbjct: 160 EMGFREDIDMIISHSPQQRQTLLFSATWPQAIAHISQKIQRDPLTVETGDVSDLPAIEQT 219

Query: 452 --PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERF 507
              AG +   T +I +             LSE + A  +  C         N +   +  
Sbjct: 220 FYEAGAREKLTALIGL-------------LSERQPASCVVFC---------NTKRECDDI 257

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
               E+   S   +HG +   D++ ++  F NG+C++L+AT V   G+D+   S+++   
Sbjct: 258 AYALENAQISAQPLHGDLEQRDRDQMLIRFANGSCRVLVATDVAARGLDIKALSMVVNYQ 317

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                   +H++ GR  R  +    + L  P
Sbjct: 318 LSFDPEVHVHRI-GRTARAGQEGCAVSLVAP 347


>gi|60501849|gb|AAX22124.1| DEAD-box RNA-dependent helicase p68 [Carassius auratus]
          Length = 611

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 146/349 (41%), Gaps = 51/349 (14%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y 
Sbjct: 136 MVGIAQ--TGSGKTLSYLLPAIVHINHQPFLERGEGPICLVLAPTRELAQQVQQVAAEYG 193

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 194 KASRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEVGKTNLRRCTYLVL 249

Query: 401 DEQHR-----FGVQ----------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R     F  Q           R  L   AT P  +   A    +  V  ++G + +
Sbjct: 250 DEADRMLDMGFEPQIRKILDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQINVGALQL 309

Query: 446 SKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           S      A    ++ V +  +  + D+++  L+ ++SE +    I   +E K     R  
Sbjct: 310 S------ANHNILQIVDVCNDGEKEDKLMRLLEEIMSEKENKTIIF--VETK-----RRC 356

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +   S+      ++ I HG  S  +++ V++ FK G   +LIAT V   G+DV D   +
Sbjct: 357 DDLTRSMRRDGWPAMGI-HGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDIKFV 415

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           I  +  +     +H++ GR  R ++  +    + P   K ++  +SVL+
Sbjct: 416 INYDYPNNSEDYIHRI-GRTARSQKTGTAYTFFTPNNMKQAHDLVSVLR 463


>gi|307565440|ref|ZP_07627929.1| DEAD/DEAH box helicase [Prevotella amnii CRIS 21A-A]
 gi|307345890|gb|EFN91238.1| DEAD/DEAH box helicase [Prevotella amnii CRIS 21A-A]
          Length = 438

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 158/359 (44%), Gaps = 55/359 (15%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           IL  +  +P   QE+  K IL      ++ + +L    G+GK+   LI ++  +   E  
Sbjct: 6   ILDKLGITPNAMQEATFKAILH----TDKDILVLS-PTGTGKSFAYLIPLSQLININEDK 60

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QAVI+ P   LA Q    +K      + +   + G        K L +    + H++  
Sbjct: 61  VQAVIVLPSRELALQLCTVMKDLGTGLRALA--LYGGRATMDEHKLLNK---EKPHLVFA 115

Query: 382 THALFQD-----SIQYYKLILVIVDEQHR---FGVQQRL-KLTQKATAPHV---LLMTAT 429
           T     D     +I    +  +++DE  +    G  + +  L  K   P++   +L++AT
Sbjct: 116 TPGRLNDHLDKGNINASCVDFMVIDEFDKCLAMGFHEEMYNLVNKL--PNIKRRILLSAT 173

Query: 430 ---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
               IP  + +  L  ID S  +E  + R  + T ++     D+ +E L  +L   K   
Sbjct: 174 YAEEIPNFISMGRLLKIDFSDKSEVLSNR--VSTFVVHSQEKDK-LETLFALLCTFKDQS 230

Query: 487 WICPQIEEKKESNFRSVVER-FNSLHEH-FTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            I          N+R+ VER +N LHE  FT+S+   HG +   ++E+ +  F NG+  +
Sbjct: 231 SIVFL-------NYRNSVERVYNFLHEKGFTTSL--FHGGLDQAEREAALYRFSNGSANI 281

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVGRGEEISSCILLYHP 598
           LI+T +   G+D+ D + II     H+ L +     +H++ GR  R ++  +   +  P
Sbjct: 282 LISTDLAARGLDIPDVNNII-----HYHLPESEDSFIHRV-GRTARWDKGGTTCFILSP 334


>gi|157819755|ref|NP_001102328.1| hypothetical protein LOC364073 [Rattus norvegicus]
 gi|149040979|gb|EDL94936.1| rCG20177 [Rattus norvegicus]
          Length = 659

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 182/434 (41%), Gaps = 91/434 (20%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           KA + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 128 KADEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 182

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-- 312
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+  
Sbjct: 183 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 236

Query: 313 -----------AMAAAVEAG--GQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
                      A+ A  E G  G+      ++++AP   LA Q YE  +K++  +++   
Sbjct: 237 LSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 296

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 297 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 352

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 353 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 411

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  I   +E KK ++    +E F   HE +  
Sbjct: 412 NITQKVVWVEEADKRSFLLDLLNATGKDSL-ILVFVETKKGAD---SLEDF-LYHEGY-- 464

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ- 575
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I     +F L   
Sbjct: 465 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI-----NFDLPSD 519

Query: 576 ----LHQLRGRVGR 585
               +H++ GR GR
Sbjct: 520 IEEYVHRI-GRTGR 532


>gi|148989841|ref|ZP_01821135.1| peptide chain release factor 2 [Streptococcus pneumoniae SP6-BS73]
 gi|147924783|gb|EDK75867.1| peptide chain release factor 2 [Streptococcus pneumoniae SP6-BS73]
          Length = 401

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 154/352 (43%), Gaps = 38/352 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + F+ PT+ Q+  I  +L       R L + +   GSGKT   L+ +   ++     
Sbjct: 16  LKELKFTTPTEVQDKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDEASDS 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHII 379
            QAVI AP   LA Q Y+  ++ + ++ + V ++   G   +A   + +E++A  Q HI+
Sbjct: 70  VQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKA---RQIEKLASNQPHIV 126

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTAT 429
           IGT     D ++   L +      +VDE         L+   K           ++ +AT
Sbjct: 127 IGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSAT 186

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            IP+ L         + K    P   K IKT  +  + ID  +   K    +  + Y + 
Sbjct: 187 -IPQKLQPF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-HDKNAQIYQLT 237

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             ++      F +   R + LH + T+    +A IHG ++  +++ +M+  +N   + ++
Sbjct: 238 QLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 298 ATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|209549507|ref|YP_002281424.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535263|gb|ACI55198.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 505

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 134/321 (41%), Gaps = 46/321 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            G+GKT   ++ M + +E G       + +I+ P   LA Q  E  +KY +N ++ V ++
Sbjct: 48  TGTGKTASFVLPMLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALL 107

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---- 406
            G +    + + LER     A ++I T     D  +  KL++     +++DE  R     
Sbjct: 108 IGGVSFEDQDRKLER----GADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMG 163

Query: 407 ------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPI 458
                  + + +  T++      L  +AT  P    L    L + +  ++ +  +  K +
Sbjct: 164 FIPDIERIAKMIPFTRQ-----TLFFSATMPPEIQKLADRFLQNPERIEVAKPASAAKTV 218

Query: 459 KTVIIPINRID----EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
               +  +  D     V+  L    +E K A   C     KK+     V + F SL  H 
Sbjct: 219 TQRFVASHSKDYEKRAVLRELVRAQTELKNAIIFC---NRKKD-----VADLFRSLERH- 269

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             S+  +HG M    +   + SF++G  +LL+A+ V   G+D+ D S +   +       
Sbjct: 270 GFSVGALHGDMDQRSRTMTLQSFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSED 329

Query: 575 QLHQLRGRVGRGEEISSCILL 595
            +H++ GR GR     +   L
Sbjct: 330 YVHRI-GRTGRAGRSGASFTL 349


>gi|254428748|ref|ZP_05042455.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
 gi|196194917|gb|EDX89876.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
          Length = 450

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 152/365 (41%), Gaps = 75/365 (20%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------EAGGQAV 325
           +PT  Q +AI   L+      R LR++    GSGKT   L+ M   +          +A+
Sbjct: 24  TPTPVQTAAIPAALE-----GRDLRVV-ARTGSGKTAAFLLPMLHQLLQYSRPRTDTRAL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN----MPQAHRRKALERIAHGQAHIIIG 381
           I+ P   LAQQ  + ++   + T I  E++TG     +  A  RK  E        I+IG
Sbjct: 78  ILLPTRELAQQTLKQVEALGRYTFIKAELLTGGEDFKVQAAKMRKNPE--------ILIG 129

Query: 382 THALFQDSIQYYKLIL-----VIVDEQHRF---GVQQR-LKLTQKATAP-HVLLMTATP- 430
           T     + +    L+L     +++DE  R    G     L+L  +  A    LL +AT  
Sbjct: 130 TPGRLIEHLDAGNLLLQDLEMLVLDESDRMLDMGFNDDVLRLAAECRAERQTLLFSATTG 189

Query: 431 -------------IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                         P++LVL S+ D++              ++V   I   D+V  + ++
Sbjct: 190 GNAMENMISSVLRDPKSLVLDSVRDLN--------------ESVSQQIITADDVKHKERL 235

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534
           V        W+      +K   F +  E+ + L     +S   + ++HG     D++  M
Sbjct: 236 V-------QWLLANETYEKAVVFTNTREQADRLGGVLVASNLKVFVLHGEKDQKDRKLAM 288

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR--GEEISSC 592
           D  K G  K+L+AT V   GI V +  ++I  +    G   +H++ GR GR  GE  +  
Sbjct: 289 DRLKAGAVKVLVATDVAARGIHVDNLDLVINFDMPRSGDEYVHRI-GRTGRVGGEGTAIS 347

Query: 593 ILLYH 597
           ++  H
Sbjct: 348 LIAAH 352


>gi|187734559|ref|YP_001876671.1| primosomal protein N' [Akkermansia muciniphila ATCC BAA-835]
 gi|187424611|gb|ACD03890.1| primosomal protein N' [Akkermansia muciniphila ATCC BAA-835]
          Length = 738

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 114/262 (43%), Gaps = 23/262 (8%)

Query: 212 PRKAKDFEWTSPARER---LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
           PR+A+  ++ S A+++   LA     A  +A  L  K F       ++ +    ++ +  
Sbjct: 136 PRQAQMLDYFSSAKQQSAPLAAFGAGALNVARSLEAKGFISLKEEAVHRDPSTGEQFVPT 195

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P      Q+ A+++I    + + +   +LQG  GSGKT V L A++  V++G  A+IM 
Sbjct: 196 QPMKLNSQQQKALEEITAMCAAERKKPVLLQGVTGSGKTEVYLQAVSQIVKSGKSALIMV 255

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L  Q  +  K         V ++   +    R      I  G+A I+IG  +    
Sbjct: 256 PEISLTPQTVQRFKSRFAELPSSVAVLHSLLSDGERFDEWHAIRSGKARIVIGPRSAVFA 315

Query: 389 SIQYYKLILVIVDEQHRFGVQQ--------------RLKLTQKATAPHVLLMTATPIPRT 434
            +Q   L LVIVDE+H    +Q              R  L   A    VLL +ATP   +
Sbjct: 316 PLQ--NLGLVIVDEEHDASYKQESSPRYHGRDLAVLRAHLENCA----VLLGSATPSLES 369

Query: 435 LVLTSLGDIDISKITEKPAGRK 456
           +    +G   + K+TE+  G++
Sbjct: 370 IHNALIGKYSLVKLTERADGQQ 391


>gi|329667004|gb|AEB92952.1| ATP-dependent RNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 409

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 126/305 (41%), Gaps = 24/305 (7%)

Query: 302 VGSGKTLV-ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G+GKTL   L  M    E GG+ +I+ P   LA Q    +  Y ++  +    + G   
Sbjct: 41  TGTGKTLAYGLPVMERIAEIGGRGIILEPTTELAIQTRNNLLPYAKSLGLKTIALVG--- 97

Query: 361 QAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
             +R++ LER+   +  III T   F     ++ I+Y  +  +++DE        +L L 
Sbjct: 98  AGNRKRQLERLKKEKPEIIIATPGRFFDFLSENRIKYQDINALVIDEADDILEFTKLDLL 157

Query: 416 QK-----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
                  ++   +LL  A+    T     L +     I  +P  +  +K   + ++  +E
Sbjct: 158 SSLGQNLSSTAQILLFGASESEITKDAEDLFNHTFLLIDVRPEQKSEVKHYFLQVS--NE 215

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
              +    L++  K   I     +  ES       RF  +  H  +  A++    S  ++
Sbjct: 216 YKMQFLQRLAKLDKFKGIL--FFDSTESEM-----RFARIFSHSKTKFAVLSNETSKQNR 268

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E ++ +F+ G  K L AT +   G+D+ D S +I           LH+  GR GR  +  
Sbjct: 269 EKILSNFRAGRIKFLFATDLAARGLDLPDVSYVINFEIPSEVNTYLHR-SGRTGRMNKSG 327

Query: 591 SCILL 595
           + + L
Sbjct: 328 TVVTL 332


>gi|126728360|ref|ZP_01744176.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Sagittula
           stellata E-37]
 gi|126711325|gb|EBA10375.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Sagittula
           stellata E-37]
          Length = 736

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 163/388 (42%), Gaps = 46/388 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQA---------VIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  +    QA         +++AP   LA Q  + ++   + 
Sbjct: 35  LVSAQTGSGKTVGFGLAIAPTLLGEEQAFGPAGTPLALVVAPTRELAFQVMQELRWLYEK 94

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
           T  +V    G M     R+ LER      HI++GT     D I+   L L     V++DE
Sbjct: 95  TGAMVNSCVGGMDVRQERRFLER----GTHIVVGTPGRLCDHIRRGALDLSDVRAVVLDE 150

Query: 403 QHR---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE---KPAGRK 456
                  G ++ L+          +L TA    RTL+ ++     I +I E   K A R 
Sbjct: 151 ADEMLDLGFREDLEF---------ILQTAPAERRTLLFSATVSPVIGRIAEEFQKDAFR- 200

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSLHE 512
            I T+       D   + L+V  ++   A +   +  + + +    N R+ V    +   
Sbjct: 201 -INTINKAQQHADIAYKALRVAQADSDHAIFNLLRFHDDESAIVFANTRAQVNHLTARLH 259

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   S+  + G +S  ++   + + ++G  ++ +AT V   GID+ + S++I  +     
Sbjct: 260 NRGLSVVSLSGELSQQERTHALQAMRDGRARVCVATDVAARGIDLPNLSLVIHADLPTNT 319

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT-EDGFLIAEEDLKQRKEG 631
            + LH+  GR GR  +     L+  P   K +   L   K T E     + ED+  R E 
Sbjct: 320 ESLLHR-SGRTGRAGKKGISALIVPPKSVKKAERLLKWAKITAEWAVPPSAEDISARDEE 378

Query: 632 EILGIK--QSGMPKFLIAQPELHDSLLE 657
           ++L     Q G+P+    Q E    LLE
Sbjct: 379 KLLTDPSWQMGVPE---DQAEFAARLLE 403


>gi|317472515|ref|ZP_07931836.1| primosomal protein N [Anaerostipes sp. 3_2_56FAA]
 gi|316900029|gb|EFV22022.1| primosomal protein N [Anaerostipes sp. 3_2_56FAA]
          Length = 741

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 7/132 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            +SQE  I++   D +   R   +L G  GSGKT V L A+   V  G QA+++ P   L
Sbjct: 209 NESQEKLIQEFKADYAAGERKTYLLHGVTGSGKTEVYLAAIEEVVRKGKQAIVLIPEIAL 268

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
               Y+ + ++T+     V I+   + +  +     R  +G   IIIG   ALF   + +
Sbjct: 269 T---YQTVCRFTKRFGDRVSILNSRLSKGEKYDQWLRAKNGDCDIIIGPRSALF---VPF 322

Query: 393 YKLILVIVDEQH 404
             L L+I+DE+H
Sbjct: 323 PNLGLIIMDEEH 334


>gi|167630200|ref|YP_001680699.1| primosomal protein n' [Heliobacterium modesticaldum Ice1]
 gi|167592940|gb|ABZ84688.1| primosomal protein n' [Heliobacterium modesticaldum Ice1]
          Length = 789

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 22/184 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V + A+  A+  G QA+++ P I +  Q      +++       V ++
Sbjct: 266 LLHGVTGSGKTEVYICAIREALARGRQALLLVPEIALTPQTERRLRERFGSQ----VALL 321

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ--RLK 413
              +  A RR+  +RI  G+A +++G  +     +   +L L+IVDE+H    +Q   LK
Sbjct: 322 HSGLADAARRQEWQRIYRGEADLVVGARSAVFAPLP--RLGLIIVDEEHEPSYRQDNDLK 379

Query: 414 LTQKATAPH--------VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
              + TA          V+  +ATP   T      G   + K+ ++PAG +     + P+
Sbjct: 380 YHARETAMERARHCGAVVVFGSATPALETYAQALSGRFQLLKLRQRPAGGQ-----LPPV 434

Query: 466 NRID 469
           + ID
Sbjct: 435 DVID 438


>gi|229582467|ref|YP_002840866.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.N.15.51]
 gi|228013183|gb|ACP48944.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.N.15.51]
          Length = 360

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 135/336 (40%), Gaps = 42/336 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
           PT+ QE  I +++   S       I+Q   GSGKT   +I +   +E    A+I++P   
Sbjct: 38  PTRVQEVVIPELMNSKSV------IVQAKTGSGKTAAYVIPI---LERNSTALILSPSRE 88

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD---- 388
           LA Q  + IKK  +  QI V +I G M    +R         Q+ I++GT     D    
Sbjct: 89  LATQILDEIKKLGKYKQIDVSLIIGGMSYDDQR---------QSKIVVGTPGRLLDLWSK 139

Query: 389 -SIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
             I +     VIVDE  R    G    +++        +    +  IP  ++  +     
Sbjct: 140 GKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIAGFFSATIPDEIMTLA----- 194

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSV 503
                 K   +   + V+     ++EV ++ +KV      K   +  +I  +K   F   
Sbjct: 195 ------KEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLLEEINGEKILVFART 248

Query: 504 VERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            +R   L+        ++ ++ G M    +      FK G   +L+AT +   GID++D 
Sbjct: 249 RDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATDLASRGIDIIDV 308

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           + +I  +        +H++ GR GR   +   I  Y
Sbjct: 309 NKVINFDIPRDVETYIHRV-GRTGRMGRVGQAITFY 343


>gi|302798402|ref|XP_002980961.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii]
 gi|300151500|gb|EFJ18146.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii]
          Length = 653

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 60/370 (16%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           KQFK E+G+   + G I ++   N    PT  Q  A+  +L        ++ I +   GS
Sbjct: 183 KQFK-ELGLDSLLMGAITKQGYEN----PTPIQCQALPIVLS----GRDIIGIAK--TGS 231

Query: 305 GKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           GKT   ++ M   +          G   VI AP   LAQQ +   +K+ +   I V  + 
Sbjct: 232 GKTAAFVLPMIVHIMDQEELGKGEGPIGVICAPTRELAQQIFNESRKFAKPYGIRVSGVF 291

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-----F 406
           G M +  + K L+        I++ T     D     ++  ++   +++DE  R     F
Sbjct: 292 GGMSKLDQFKELK----AGCEIVVATPGRLIDMLKMKALTMFRATYLVLDEADRMFDLGF 347

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             Q R  + Q       LL +AT +PR   TL    L                P++    
Sbjct: 348 EPQIRSIVGQIRPDRQTLLFSAT-MPRRVETLAREVLS--------------APVRVTAG 392

Query: 464 PINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS- 517
            + R +E V +  ++V ++  K  W+  ++ +  ++     F S   R   L +H   S 
Sbjct: 393 EVGRANEDVTQVAQIVATDADKLQWMLSKLPQMVDAGDVLVFASTKVRVEELEKHLQDSG 452

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +A +HG      +  V+  FK+G   +L+AT V   G+D+     ++  +        
Sbjct: 453 FKVAALHGDKDQASRVDVLQGFKSGQFHVLVATDVAARGLDIKSIKTVVNYDTAKDMDTH 512

Query: 576 LHQLRGRVGR 585
           +H++ GR GR
Sbjct: 513 VHRV-GRTGR 521


>gi|188585530|ref|YP_001917075.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350217|gb|ACB84487.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 474

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 137/328 (41%), Gaps = 49/328 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           I Q   G+GKT    I     ++       + +++ P   LA Q  E I +  Q   I  
Sbjct: 43  IGQAQTGTGKTAAFGIPYIERIQDPNNKEIKGLVVTPTRELAIQVAEEINRLGQYNGITA 102

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF- 406
             I G     H+ KAL++    +  II+GT       L + +I+   + +V +DE     
Sbjct: 103 LPIYGGQSIGHQIKALKK----RPQIIVGTPGRLIDHLNRKTIKLNNVNMVTLDEADEML 158

Query: 407 --GVQQRLKLTQKATAPH--VLLMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKT 460
             G  + +K   + T  H   L+ +AT P P ++L    + D +I         R   K 
Sbjct: 159 NMGFIEDIKTILQKTPSHKQTLMFSATMPGPIKSLAEQFMNDPEII--------RTKTKE 210

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS 517
           + +P       IE+  V + EG K    C  ++ +       F     R + L++     
Sbjct: 211 ITVP------SIEQQYVEVKEGDKFDVFCRLVDSQSPEKAIVFGRTKRRVDELYQALKKR 264

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
                 IHG M    ++ V+ +F+ G  +LL+AT V   G+DV   S I    I ++A+ 
Sbjct: 265 GYFAEGIHGDMPQTKRDHVIKNFRTGATELLVATDVASRGLDVTGISHIYNFDIPQDADS 324

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +    +H++ GR GR  +  + + L  P
Sbjct: 325 Y----VHRI-GRTGRAGQSGAAVTLVTP 347


>gi|167769539|ref|ZP_02441592.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM
           17241]
 gi|167668507|gb|EDS12637.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM
           17241]
          Length = 572

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 137/315 (43%), Gaps = 48/315 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I +   G+GKT    I     +E+G    Q ++++P   LA Q  + ++K+ +    + V
Sbjct: 45  IGRSSTGTGKTAAFGIPAVERIESGLKAPQVLVLSPTRELAMQIADEMRKFAKYKPGVCV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQH 404
             + G  P   + +AL       A+I+IGT     D ++ + L        +L   DE  
Sbjct: 105 AAVYGGAPMDAQIRALR-----AANIVIGTPGRVMDHMRRHTLRLDDLRTVVLDEADEML 159

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKT 460
             G    ++  L +       +L +AT  P  L +T   L D     I     G++ I  
Sbjct: 160 NMGFLDDIQTILAETPDTRQTVLFSATMPPAILKITDKFLHDPQTVDIR---TGQRTIAA 216

Query: 461 VIIPINRIDEV--IERLKVVLS--EGKKAYWICPQIEEKKESNFRSVVERFNS-LHEHFT 515
           V     R+ +   ++ L ++L   + K+A   C         N +++V+     L +H  
Sbjct: 217 VEQFFYRVPQARKMDALNLLLQYHDPKRAVVFC---------NTKAMVDSLTEYLSDHGF 267

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHF 571
            ++ I HG M    +  VM SF++G  ++L+AT V   GIDV +   +    I +  EH+
Sbjct: 268 RALGI-HGDMKQAGRTQVMQSFRDGKTRILVATDVAARGIDVENIEAVFNFDIPQEFEHY 326

Query: 572 GLAQLHQLRGRVGRG 586
               +H++ GR GR 
Sbjct: 327 ----IHRI-GRTGRA 336


>gi|110835269|ref|YP_694128.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110648380|emb|CAL17856.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 450

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 148/365 (40%), Gaps = 75/365 (20%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------EAGGQAV 325
           +PT  Q +AI   L+      R LR++    GSGKT   L+ M   +          +A+
Sbjct: 24  TPTPVQTAAIPAALE-----GRDLRVV-ARTGSGKTAAFLLPMLHQLLQYSRPRTDTRAL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN----MPQAHRRKALERIAHGQAHIIIG 381
           I+ P   LAQQ  + ++   + T I  E++TG     +  A  RK  E        I+IG
Sbjct: 78  ILLPTRELAQQTLKQVEALGRYTFIKAELLTGGEDFKVQAAKMRKNPE--------ILIG 129

Query: 382 THALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATP- 430
           T     + +    L+L     +++DE  R    G    +        P    LL +AT  
Sbjct: 130 TPGRLIEHLDAGNLLLQDLEMLVLDESDRMLDMGFNDDVLRLAAECRPERQTLLFSATTG 189

Query: 431 -------------IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                         PR+LVL S+ D++              ++V   I   D+V  + ++
Sbjct: 190 GNAMENMISSVLRDPRSLVLDSVRDLN--------------ESVSQQIITADDVKHKERL 235

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534
           V        W+       K   F +  E+ + L     +S   + ++HG     D++  M
Sbjct: 236 V-------QWLLANETYDKAVVFTNTREQADRLCGVLVASNLKVFVLHGEKDQKDRKLAM 288

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR--GEEISSC 592
           D  K G  K+L+AT V   GI V +  ++I  +    G   +H++ GR GR  GE  +  
Sbjct: 289 DRLKTGAVKVLVATDVAARGIHVDNLDLVINFDMPRSGDEYVHRI-GRTGRVGGEGTAIS 347

Query: 593 ILLYH 597
           ++  H
Sbjct: 348 LIAAH 352


>gi|308272111|emb|CBX28719.1| DEAD-box ATP-dependent RNA helicase cshA [uncultured
           Desulfobacterium sp.]
          Length = 548

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 132/319 (41%), Gaps = 32/319 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I+Q   G+GKT    + +   V  G    QA+I+ P   LA Q  E I     N  I++ 
Sbjct: 54  IVQAQTGTGKTAAFGLPLVEMVSTGSSMVQALILVPTRELAIQVSEEINSLRGNKDIVIA 113

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            I G      +   L R+  G  HI++GT     D +        +   LIL   DE   
Sbjct: 114 PIYGGQSIDQQ---LRRLQKG-VHIVVGTPGRVIDHLNRKTLKLEKIEHLILDEADEMLN 169

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKT 460
            G  + ++   K T P    LL +AT IP   + L    +   +  K+ ++       + 
Sbjct: 170 MGFIEDIEEIMKHTNPDKRTLLFSAT-IPQRIKDLAHKYMKGYEFLKVKKEQLTTNLTEQ 228

Query: 461 VIIPINRIDEVIERLKVV-LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           +   +   D+     +++ + +G      C     + +S+  SV      L +    + A
Sbjct: 229 IYFEVKAHDKFEALCRIIDIKDGFYGLIFC-----RTKSDVDSVA---THLMDRGYDAEA 280

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG +S   +E  ++ FK     +L+AT V   GIDV + + +I  +  H   A +H++
Sbjct: 281 I-HGDISQAQRERTLEKFKKQRVNILVATDVAARGIDVNNLTHVINYSLPHDTEAYVHRI 339

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR   + + I    P
Sbjct: 340 -GRTGRAGNVGTAITFITP 357


>gi|239930667|ref|ZP_04687620.1| DEAD-box RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291439029|ref|ZP_06578419.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341924|gb|EFE68880.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 496

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 145/339 (42%), Gaps = 46/339 (13%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEA-GGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  GQ   +++ P   LAQQ  + +  Y ++ ++ +
Sbjct: 112 RGRTGSGKTLAFGLALLARTAGQRAEAGQPLGLVLVPTRELAQQVTDALTPYARSVKLRL 171

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHR-- 405
             + G MP + +  AL R     A I++ T    +D I+       ++++ ++DE  +  
Sbjct: 172 ATVVGGMPISRQAGALRR----GAEIVVATPGRLKDLIERGDCRLDQVVVTVLDEADQMA 227

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIK 459
              F  Q    L Q       +L +AT + R    LV   L D  +  +    A    ++
Sbjct: 228 DMGFMPQVTALLDQVRPQGQRMLFSAT-LDRNVDLLVRRYLSDPVVHSVDPSAAAVTTME 286

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517
             ++ ++  D+     ++   +G+   ++          + +  V+R   L EH   S  
Sbjct: 287 HHVLHVHGADKHAAITEIAARDGRVIMFL----------DTKHAVDR---LTEHLLKSGV 333

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI--DVVDASIIIIENAEHFGLA 574
             A +HG  S   +   +  FKNG   +L+AT V   GI  D +D  + +    +H    
Sbjct: 334 RAASLHGGKSQPQRTRTLTQFKNGHVNVLVATNVAARGIHVDSLDLVVNVDPPTDHKDY- 392

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            LH+  GR  R  E  S + L  P   + + TRL  L  
Sbjct: 393 -LHR-GGRTARAGESGSVVTLVTPN-QRRAMTRLMALAG 428


>gi|229816635|ref|ZP_04446924.1| hypothetical protein COLINT_03684 [Collinsella intestinalis DSM
           13280]
 gi|229807763|gb|EEP43576.1| hypothetical protein COLINT_03684 [Collinsella intestinalis DSM
           13280]
          Length = 1126

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/358 (20%), Positives = 158/358 (44%), Gaps = 43/358 (12%)

Query: 263 QKILRNI------PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-AMA 315
           +++ RN+      P  P ++Q  A+     D  +  R +  + G  G GK+L+  + A+ 
Sbjct: 632 EQLTRNLIHTFIGPAEPHRAQMEAL-----DALKSRRGVLAVMG-TGRGKSLIFHVHAVR 685

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
            A+  G  ++ + P+  L       +++   +  + V ++TG+ P A R +A   +  G+
Sbjct: 686 EAILNGSASIFIYPLRALVTDQAYHLQETLASLGVRVGVLTGDTPSAARDRAFSLLGAGK 745

Query: 376 AHIIIGT-------HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL--LM 426
             I++ T        A F  S    ++  V+VDE H     +    T     P +L  L+
Sbjct: 746 LDIVLTTPEFLSIHRARFAAS---RRIGFVVVDEAHHVAGAKGGDRTAYLDMPQILHDLL 802

Query: 427 TATPIPRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIE------RLKVV 478
                P  L +T+    +++    +  P   + +   +     +D+  +      RL  +
Sbjct: 803 D----PTVLAVTATASAEVAAEIRRLLPVDAQVVDAAVRENLELDDGRDLSSRENRLVSI 858

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++ G+K+  +     ++ ++  R++  R   L     + IA  H  ++  ++ SV  +F+
Sbjct: 859 VATGQKSV-VYVNSRDQAQALCRTLRRRVPEL----GARIAFYHAGLTRPERASVEAAFR 913

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +G    +++T+    G+++ D   +++ +   FG  + +Q+ GR GR    +S  LLY
Sbjct: 914 DGELACIVSTSAFGEGVNIPDIRHVVLYHMP-FGDIEFNQMSGRAGRDGAPASIHLLY 970


>gi|146422655|ref|XP_001487263.1| hypothetical protein PGUG_00640 [Meyerozyma guilliermondii ATCC
           6260]
 gi|152013487|sp|A5DBI5|DBP5_PICGU RecName: Full=ATP-dependent RNA helicase DBP5
 gi|146388384|gb|EDK36542.1| hypothetical protein PGUG_00640 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 482

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 155/374 (41%), Gaps = 67/374 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+K QE A+  +L     KN    I Q   G+GKT    + M + V+      Q + ++P
Sbjct: 115 PSKIQEKALP-LLISNPPKNM---IGQSQSGTGKTAAFSLTMLSRVDVNDPNTQCICLSP 170

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E I    + T++  +++   +PQA     +E+    QAHI++GT     D 
Sbjct: 171 TRELARQTLEVITTMGKFTKVTTQLV---VPQA-----MEKNQGTQAHIVVGTPGTLLDM 222

Query: 390 IQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG-DI 443
           I+       K+ + ++DE       Q L       A  + +    P    LVL S     
Sbjct: 223 IKRKLLRTGKVKVFVLDEADNMLDGQGL------AAQCIRVKKVLPTSCQLVLFSATFPT 276

Query: 444 DISKITEKPAGRKPIKTVIIP-INRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----- 497
           ++ K  EK           +P  N ++   E L V     K+ Y  C   + K E     
Sbjct: 277 EVRKYAEK----------FVPNANSLELKQEELNV--DAIKQLYMDCDSEKHKAEVLSEL 324

Query: 498 -------SN--FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
                  S+  F       N L+    S   + +I+H  + + +++ ++D F+ G  K+L
Sbjct: 325 YGLLTIGSSIIFVKTKATANYLYAKMKSEGHACSILHSDLDNSERDKLIDDFREGRSKVL 384

Query: 546 IATTVIEVGIDVVDASII------IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           I T V+  GID+   S++      + ++ +      LH++ GR GR   +   +   H  
Sbjct: 385 ITTNVLARGIDIASVSMVVNYDIPVDKDDKPDPSTYLHRI-GRTGRFGRVGVAVSFVH-- 441

Query: 600 LSKNSYTRLSVLKN 613
             K SY  L  +++
Sbjct: 442 -DKKSYEDLEQIRS 454


>gi|45709504|gb|AAH67585.1| Ddx5 protein [Danio rerio]
          Length = 496

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 142/352 (40%), Gaps = 57/352 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y 
Sbjct: 136 MVGIAQ--TGSGKTLSYLLPAIVHINHQPFLEHGDGPICLVLAPTRELAQQVQQVAAEYG 193

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + ++I    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 194 KASRIKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEAGKTNLRRCTYLVL 249

Query: 401 DEQHR---FGVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G +             R  L   AT P  +   A    +  +  ++G + +
Sbjct: 250 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYIQINVGALQL 309

Query: 446 SKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           S      A    ++ V +  +  + D++I  L+ ++SE           +E K   F   
Sbjct: 310 S------ANHNILQIVDVCNDGEKEDKLIRLLEEIMSE-----------KENKTIIFVET 352

Query: 504 VERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             R + L             IHG  +  +++ V++ FK G   +LIAT V   G+DV D 
Sbjct: 353 KRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIATDVASRGLDVEDV 412

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             +I  +  +     +H++ GR  R ++  +    + P   K ++  +SVL+
Sbjct: 413 KFVINFDYPNNSEDYIHRI-GRTARSQKTGTAYTFFTPNNMKQAHDLVSVLR 463


>gi|295425078|ref|ZP_06817784.1| ATP-dependent helicase RecQ [Lactobacillus amylolyticus DSM 11664]
 gi|295065275|gb|EFG56177.1| ATP-dependent helicase RecQ [Lactobacillus amylolyticus DSM 11664]
          Length = 590

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 147/360 (40%), Gaps = 51/360 (14%)

Query: 262 AQKILRNI-PFSPTKS-QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           AQ+ILRN+  +   +S QE  I  +LQ    +  +L ++    G+GK+L   I   A + 
Sbjct: 3   AQRILRNVFGYKVFRSGQEKVINLVLQ----RQNVLAVMP--TGAGKSLCYQIP--ALLN 54

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G   VI   I ++  Q    I    QN  I    +    PQ      L +   G+  ++
Sbjct: 55  SGVTLVISPLISLMKDQ----IDSLHQNG-IEAAALNSATPQEEVNPILRQAYEGKIKLL 109

Query: 380 IGT-----HALFQDSIQYYKLILVIVDEQH---------RFGVQQRLK-LTQKATAPHVL 424
             T        F+  + +  + LV VDE H         R   +Q L  +    + P++L
Sbjct: 110 YMTPERLAMDYFRYQLNFIDVSLVAVDEAHCISQWGHDFRPAYRQILDGINSLKSKPNIL 169

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            +TAT  P      ++ D DI+K          + + + P           +VV S    
Sbjct: 170 ALTATATP------AVQD-DIAKQLNIKKENYVVTSFVRPN-------LSFQVVNSSKDN 215

Query: 485 AYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
             +I   I+          +N R  V    +  +    S A  HG M+  D++ + D F+
Sbjct: 216 NLYIYDYIKAHVNQAGIVYTNTRKRVGEITAYLQRKGISAASYHGGMATEDRDCIQDDFQ 275

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               ++++AT    +GID  +   +I  N+    +   +Q  GR GR  +  S ILLYHP
Sbjct: 276 FDRLQVIVATNAFGMGIDKSNVRFVIHANSAR-NIESYYQEAGRAGRDGDPCSAILLYHP 334


>gi|225377872|ref|ZP_03755093.1| hypothetical protein ROSEINA2194_03531 [Roseburia inulinivorans DSM
           16841]
 gi|225210310|gb|EEG92664.1| hypothetical protein ROSEINA2194_03531 [Roseburia inulinivorans DSM
           16841]
          Length = 731

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 163/427 (38%), Gaps = 117/427 (27%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
            + Q+S +  I +D+ QK     +++G  GSGKT V +  +A  +  G QA+++ P I +
Sbjct: 206 NEEQQSVVDAIERDLDQKIAKTYLIKGVTGSGKTEVYMELIAHMLAQGKQAIVLIPEIAL 265

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F  ++       V I+   +    R    ER  +G   I+IG   ALF     
Sbjct: 266 TFQTVMRFYNRFGDR----VSIMNSRLSPGERFDQFERAKNGDVDIMIGPRSALF---TP 318

Query: 392 YYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           + KL L+I+DE+H          R+  ++      +     V+L +ATP   +      G
Sbjct: 319 FSKLGLIIIDEEHESSYKSETLPRYHARETAIERARMCGASVVLGSATPSVESYYKAKTG 378

Query: 442 DIDI----SKITEKP--------------AGRKPIKTVIIPINRIDEVIE-RLK------ 476
           + ++     ++ EKP              AG + I +V     R+ E++E RLK      
Sbjct: 379 EYELLELKHRVAEKPLPKVEVVDLREELKAGNRSILSV-----RLQELMEDRLKKGQQMM 433

Query: 477 ---------------------------VVLS--------EGKK-----AYWI-----CPQ 491
                                      V LS        EGK       Y I     CP 
Sbjct: 434 LFINRRGVAGFVSCRACGHVLKCPHCDVSLSQHVTRQHPEGKMVCHYCGYEIPMPKTCPA 493

Query: 492 IEEKKESNFRSVVERFNSL-HEHFTSSIAIIHGRMSDIDK-------ESVMDSFKNGTCK 543
              +  S F++  ++   +  E F  +  +   RM D+D        E ++ +F N    
Sbjct: 494 CGSRYISGFKAGTQKIEMIVKERFPQARVL---RM-DMDTTRNKEGYEQILSAFANQEAD 549

Query: 544 LLIATTVIE----------VGIDVVDASIIIIE-NAEHFGLAQLHQLRGRVGRGEEISSC 592
           +LI T +I           VG+   D S+ + + +A       L Q  GR GRG E    
Sbjct: 550 ILIGTQMIVKGHDFPNVTLVGVLAADLSLYVSDYHAAERTFQLLTQAAGRAGRGSEPGEV 609

Query: 593 ILLYHPP 599
           ++  + P
Sbjct: 610 VIQTYQP 616


>gi|212543663|ref|XP_002151986.1| RNA helicase (Dbp), putative [Penicillium marneffei ATCC 18224]
 gi|210066893|gb|EEA20986.1| RNA helicase (Dbp), putative [Penicillium marneffei ATCC 18224]
          Length = 554

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 145/343 (42%), Gaps = 51/343 (14%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +     + A        G   +I+AP   LA Q    I K+ ++++I 
Sbjct: 169 AETGSGKTLTYCLPAIVHINAQPLLSPGDGPIVLILAPTRELAVQIQTEISKFGRSSRIR 228

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G +P+  + + L R       + I T     D ++  K  L     +++DE  R 
Sbjct: 229 NTCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRM 284

Query: 406 ----FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KI 448
               F  Q R  + Q           AT P  +   A+      +  ++G +D+S   +I
Sbjct: 285 LDMGFEPQIRKIIGQIRPDRQTCMWSATWPKEVRQLASDFLNDFIQVNIGSMDLSANHRI 344

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           T+       I  V+    + D++I+ L+ ++ + K    I    +   +      + RF 
Sbjct: 345 TQ-------IVEVVSDFEKRDKMIKHLEKIMEDRKNKCLIFTGTKRVADD-----ITRF- 391

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L +    +++I HG     +++ V+  FKNG   +++AT V   GIDV D + +I  + 
Sbjct: 392 -LRQDGWPALSI-HGDKQQNERDWVLQEFKNGKSPIMVATDVASRGIDVRDITHVINYDY 449

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            +     +H++ GR GR     + I  +    SK +   +++L
Sbjct: 450 PNNSEDYVHRI-GRTGRAGAKGTAITFFTTDNSKQARDLVTIL 491


>gi|14861844|ref|NP_149068.1| putative ATP-dependent RNA helicase Pl10 [Mus musculus]
 gi|130256|sp|P16381|DDX3L_MOUSE RecName: Full=Putative ATP-dependent RNA helicase Pl10
 gi|200389|gb|AAA39942.1| PL10 protein [Mus musculus]
 gi|26325502|dbj|BAC26505.1| unnamed protein product [Mus musculus]
 gi|148681106|gb|EDL13053.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
 gi|223460348|gb|AAI39288.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
 gi|223461116|gb|AAI39287.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
          Length = 660

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 93/408 (22%), Positives = 171/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           KA + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 129 KADEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 183

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-- 312
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+  
Sbjct: 184 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 237

Query: 313 -----------AMAAAVEAG--GQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
                      A+ A  E G  G+      ++++AP   LA Q YE  +K++  +++   
Sbjct: 238 LSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 297

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 298 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 353

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 354 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 412

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  I   +E KK ++    +E F   HE +  
Sbjct: 413 NITQKVVWVEEADKRSFLLDLLNATGKDSL-ILVFVETKKGAD---SLEDF-LYHEGY-- 465

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 466 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 513


>gi|190891965|ref|YP_001978507.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
 gi|190697244|gb|ACE91329.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
          Length = 527

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 154/363 (42%), Gaps = 50/363 (13%)

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++QK+L  +  +    PT  Q  AI   L+    +  +  I Q   G+GKT   ++ M +
Sbjct: 31  LSQKVLSAVTDAGYTIPTPIQAGAIPFALE----RRDICGIAQ--TGTGKTASFVLPMLS 84

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q  E  +KY +N ++ V ++ G +    + + LER
Sbjct: 85  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER 144

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKA 418
                A ++I T     D  +  KL++     +++DE  R         +++  KL    
Sbjct: 145 ----GADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFT 200

Query: 419 TAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKTVIIPINRID----EVI 472
                L  +AT  P    L    L + +  ++ +  +  K +    +  +  D     V+
Sbjct: 201 R--QTLFFSATMPPEIQKLADRFLQNPERIEVAKPASTAKTVTQRFVASHSKDYEKRAVL 258

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
             L    +E K A   C     KK+     V + F SL  H   S+  +HG M    + +
Sbjct: 259 RELVRAQTELKNAIIFC---NRKKD-----VADLFRSLERH-GFSVGALHGDMDQRSRTT 309

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           ++ +F++G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR     + 
Sbjct: 310 MLQNFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRI-GRTGRAGRSGAA 368

Query: 593 ILL 595
             L
Sbjct: 369 FTL 371


>gi|330812282|ref|YP_004356744.1| ATP-independent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380390|gb|AEA71740.1| putative ATP-independent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 560

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 109/441 (24%), Positives = 184/441 (41%), Gaps = 83/441 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  +    I V
Sbjct: 146 IAQAKTGSGKTAAFGIGLLNPINPRFFGCQALVMCPTRELADQVAKEIRRLARAEDNIKV 205

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 206 LTLCGGVSFGPQIASLE---HG-AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRML 261

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTV----- 461
                   +        ++  TP  R TL+ ++   + I +++ K   R P +       
Sbjct: 262 DMGFYDAIED-------IIQQTPERRQTLLFSATYPVGIKQLSSKFM-RNPQQVKAEAFH 313

Query: 462 -----------IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
                      I P  R+D V++    VL+  + A  +           F    ++    
Sbjct: 314 SDAQIEQRFYEISPEERMDAVVK----VLAHFRPASCVA----------FCFTKQQVQET 359

Query: 511 HEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            +H TS   S   +HG +   D++ V+  F N +  +L+AT V   G+D +DA  ++I N
Sbjct: 360 VDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVI-N 417

Query: 568 AEHFGLAQLHQLR-GRVGRGEEISSCILLYHPP----------LSKN--SYTRLSVLKNT 614
            E    +++H  R GR GR  E    I L  P           L K+  S+ +L  LK+ 
Sbjct: 418 VELARDSEIHIHRVGRTGRAGEKGIAISLVAPSEAHRAQAIEQLQKSPLSWDQLDNLKSQ 477

Query: 615 EDG--------FLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKD 662
             G          I      + + G+ILG    ++G+P   + +  + D  + + + R  
Sbjct: 478 GGGPLLPAMSTLCIGAGRKDKVRPGDILGALTGEAGIPGTQVGKIAIFDFQAYVAVERGI 537

Query: 663 AKHILTQDPDLTSVRGQSIRI 683
           AK  L +  D   ++G+S+R+
Sbjct: 538 AKQALQRLND-GKIKGRSLRV 557


>gi|293390957|ref|ZP_06635291.1| primosomal protein N' [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951491|gb|EFE01610.1| primosomal protein N' [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 732

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 100/208 (48%), Gaps = 28/208 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   ++ G Q +++ P IG+  Q     ++++     ++++++
Sbjct: 221 LLDGVTGSGKTEIYLQFIEDILQQGKQVLVLVPEIGLTPQT----VRRFQARFNVVIDVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
             N+    R +  +R  +GQ+ ++IGT  ALF    Q+ +L  +I+DE+H    +Q+   
Sbjct: 277 HSNLNDTQRLQVWQRARNGQSAVVIGTRSALF---TQFAELGAIIIDEEHDASFKQQDGW 333

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                   +   ++   P +L+ +ATP   +L     G      ++EK      +K  II
Sbjct: 334 RYHARDLAIVYAKQLNIP-ILMGSATPSLESLNNVQSGKYRHLSLSEKANNSTALKQQII 392

Query: 464 PINR-------IDEVIERLKVVLSEGKK 484
            + R        D +++R++  L +G +
Sbjct: 393 DLKRQPIHNGLSDVLLKRMQAHLEKGNQ 420


>gi|314933058|ref|ZP_07840424.1| putative ComF operon protein 1 [Staphylococcus caprae C87]
 gi|313654377|gb|EFS18133.1| putative ComF operon protein 1 [Staphylococcus caprae C87]
          Length = 360

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 162/373 (43%), Gaps = 58/373 (15%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           ++A K    +PF+ +K Q+ A   I++ +     +L  L    G+GKT +    ++ A +
Sbjct: 14  QVATKGKFELPFTLSKQQQYASDAIIKAIKNAEDLL--LYAVTGAGKTEMMFDGISLARQ 71

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G    I++P   +  +    IK+  ++ QI  +I+     Q +             H +
Sbjct: 72  LGHNVAILSPRVDVVIEISHRIKEAFKDEQI--DILHQKQSQKY-----------NGHFV 118

Query: 380 IGT-HALFQDSIQYYKLILVIVDEQHRF------GVQQRLKLTQKATAPHVLLMTATPIP 432
           I T H L++   Q++    V +DE   F       +   ++   KA   H+  MTATP P
Sbjct: 119 IATVHQLYRFK-QHFDT--VFIDEVEAFPLSMDPNISLAIQTASKAIHSHIY-MTATP-P 173

Query: 433 RTLVLTSLGDIDISKITEKPA--GRKPI-----KTVIIPINRI-DEVIERLKVVLSEGKK 484
           R L+      +   K+ + PA   R+P+     K   +  +R+  ++I   +  + + + 
Sbjct: 174 RQLI----KQMSSHKVIKLPARFHRQPLPVPHFKHFKLNTSRVQSQLIHLFQAQIKQQRY 229

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
                  IE  K++        ++    H  + I +    +   DK   +++ + G   +
Sbjct: 230 TLVFFNHIETMKDA--------YHKYRAHIPNLICVYSEDVYRFDK---VEALRRGEHSI 278

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG-EEISSCILLYHPPLSKN 603
           +  TT++E G  +    +I+I NAE F  A L Q+ GRVGR  EE    +L  H  +S  
Sbjct: 279 VFTTTILERGFTMARLDVIVI-NAETFSKAALIQIAGRVGRKMEEPKGLVLFLHEGVS-- 335

Query: 604 SYTRLSVLKNTED 616
               LS++K  +D
Sbjct: 336 ----LSMIKAKKD 344


>gi|147899364|ref|NP_001082035.1| RNA helicase II/Gu [Xenopus laevis]
 gi|16975508|gb|AAG22819.2|AF302423_1 RNA helicase II/Gu [Xenopus laevis]
          Length = 759

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 142/337 (42%), Gaps = 54/337 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE------AGGQA---VIMAPIGILAQQHYEFIKKYTQN 347
           ++Q   G+GKT    I +   +       A G+A   +I+ P   LA Q    I+  T+ 
Sbjct: 220 VVQARTGTGKTFSFAIPLVEKLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITK- 278

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +  A++         ++GT    +D +Q Y+L L     V++DE
Sbjct: 279 -KLKVSCFYGGTPYQQQVFAIK----DGIDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDE 333

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
                       V++ L +  KA     P  LL +AT  P  +   +           K 
Sbjct: 334 VDMMFDMGFSEQVEEILSVRYKADPEENPQTLLFSAT-CPDWMYNMA-----------KK 381

Query: 453 AGRKPIKTVIIPINRIDE---VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             RK  + + +  +R  +    +E L +  +  +KA  +   ++    S+ ++++   + 
Sbjct: 382 YMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQKAAVLGDLVQVYSGSHGKTIIFCDSK 441

Query: 510 LHEH--------FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           L  H           S   +HG +   ++E V+  F+ GT ++LIAT V   G+D+ +  
Sbjct: 442 LEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVD 501

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ++++ +A     A +H+  GR GR      CI LY P
Sbjct: 502 LVVLYSAPKEADAYVHR-SGRTGRAGRTGVCISLYEP 537


>gi|87307717|ref|ZP_01089860.1| primosomal protein N [Blastopirellula marina DSM 3645]
 gi|87289331|gb|EAQ81222.1| primosomal protein N [Blastopirellula marina DSM 3645]
          Length = 758

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 10/138 (7%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGIL 333
           + Q +A+K IL  + ++     +L G  GSGKT V L A+   V AG QA+++ P I + 
Sbjct: 224 EDQAAALKTILHAVDEERHQTVLLHGVTGSGKTEVYLQAIDRVVAAGKQAIVLVPEISLT 283

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            Q    F  +++Q     + ++  +M    R    +RIA G   +++G   A+F  +   
Sbjct: 284 PQTKQRFRARFSQ-----IALLHSHMNDVERHWQWKRIASGHIPVVVGARSAIFAPT--- 335

Query: 393 YKLILVIVDEQHRFGVQQ 410
            +L ++I+DE+H    +Q
Sbjct: 336 PRLGMIILDEEHDSSFKQ 353


>gi|227539695|ref|ZP_03969744.1| ATP-independent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240337|gb|EEI90352.1| ATP-independent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 434

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 127/313 (40%), Gaps = 50/313 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    G+GKTL  L+A + + +    G Q +++AP   LAQQ     KK     +++  
Sbjct: 33  ILLSPTGTGKTLAFLLAASYSFDTTKKGPQCLVLAPTRELAQQIESVSKKVFHGKRVVC- 91

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ--------DSIQYYKLILVIVDEQHR 405
              G       R AL+        IIIGT             D+ Q + LIL   D+   
Sbjct: 92  -CYGGHSTREERTALKH----APDIIIGTPGRIAYHLRSENLDTAQLHSLILDEFDKSLE 146

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGD-IDISKITEKPAGRKPIKTVI 462
           FG Q+ +   + Q +     +L +AT +      T + + + I  +    A         
Sbjct: 147 FGFQEDMSFIIDQLSVLKQRILTSATQMEEIPSFTGISNALTIDYLDNSDAA-------- 198

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---SNFRSVVERFNSL-------HE 512
            P   I +VI R K  L   +  + +  QI  K+     N R  V+  + L       H+
Sbjct: 199 -PDLTIKKVICRPKEKL---RTLFNLICQIGNKRMLIFCNHRDAVDHISELLMDRELIHD 254

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
            F       HG M   D+E  +  F+NGT ++LI T +   G+D+ +   II     +  
Sbjct: 255 AF-------HGGMEQADRELTLLKFRNGTSQILITTDLAARGLDIPEIDSIIHYQLPYKE 307

Query: 573 LAQLHQLRGRVGR 585
            A +H+  GR  R
Sbjct: 308 DAFVHR-NGRTAR 319


>gi|15889136|ref|NP_354817.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
 gi|15156946|gb|AAK87602.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 503

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 149/353 (42%), Gaps = 47/353 (13%)

Query: 261 IAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++QK+L  I      +PT  Q  AI   L+    K  +  I Q   G+GKT   ++ M  
Sbjct: 9   LSQKVLSAIADAGYTTPTPIQAGAIPPALE----KRDICGIAQ--TGTGKTASFVLPMLT 62

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q  E  +KY +N ++ V ++ G +    + + LER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLER 122

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-L 424
                A ++I T     D  +  KL++     +++DE  R        +      P +  
Sbjct: 123 ----GADVLICTPGRLLDHCERGKLLMTGVEILVIDEADR--------MLDMGFIPDIER 170

Query: 425 LMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           +    P  R TL  ++    +I K+ ++         V  P +    V +R+    ++  
Sbjct: 171 IAKMIPFTRQTLFFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDY 230

Query: 484 KAYWICPQIEEKKESNFRS----------VVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           +   +   +   +E+  ++          V + F SL  H   S+  +HG M    + ++
Sbjct: 231 EKRAVLRDLVRAEEAELKNAIIFCNRKKDVADLFRSLDRH-GFSVGALHGDMDQRSRTTM 289

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           + +F++G   LL+A+ V   G+D+ D S +   +        +H++ GR GR 
Sbjct: 290 LQNFRDGQLTLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRA 341


>gi|220927583|ref|YP_002504492.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
 gi|219997911|gb|ACL74512.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
           H10]
          Length = 437

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 147/343 (42%), Gaps = 60/343 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT  Q+ AI + L     KNR + IL    G+GKTL  L+ +   + A     QA+I+ P
Sbjct: 26  PTDIQQKAIPEAL-----KNRDV-ILHSSTGTGKTLAYLLPLFMKLSAEKKEMQALILVP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEI--ITGN---MPQAHRRKALERIAHGQAHIIIGTHA 384
              LA Q    I+  +QN++I      I G+   M Q  + K        + HII+GT  
Sbjct: 80  THELAIQVVRQIELLSQNSEIKATSTPIIGDVNIMRQIDKLKL-------KPHIIVGTPG 132

Query: 385 LFQDSIQYYKLI-----LVIVDEQHRF-------GVQQRLKLTQK--------ATAPHVL 424
              + IQ  K+       +I+DE  R         ++  +K T K        AT     
Sbjct: 133 RILELIQKRKISAHTIKTIIIDEADRLLDDYNLDNIKAIIKTTLKERQIVMCSATISKKT 192

Query: 425 LMTATPIPRT-LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           +  A P+ +  LV+ S  D+ +      P   + +  V    ++ID + + ++++  +  
Sbjct: 193 VERAMPLMKEPLVIESKADMGV------PDAIEHLYFVSEQRDKIDVLRKLVRMINPKKA 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            A++          +N   ++     L  H   +   IHG     D++  MD FKNG  +
Sbjct: 247 IAFF----------ANSEDILVSEEKLRYHKLKA-GGIHGSNIKSDRKKTMDDFKNGRLQ 295

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           LLIA+ +   G+D+ D + I   N     +  LH+  GR GR 
Sbjct: 296 LLIASDIAARGLDIEDVTHIFNVNIPERSMDYLHRA-GRTGRN 337


>gi|150390823|ref|YP_001320872.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950685|gb|ABR49213.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 529

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 137/314 (43%), Gaps = 45/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---IMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I M   V    +AV   IMAP   L+ Q  + I+K++ +   +  
Sbjct: 45  IGQAQTGTGKTAAFGIPMIERVNPKNKAVQILIMAPTRELSVQVADEIQKFSNHVIGVKT 104

Query: 354 I-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
           + I G  P + + KAL+R       II+GT     D I    L L     V++DE  +  
Sbjct: 105 LAIYGGQPISTQIKALKR----GVQIIVGTPGRILDHINRKTLKLGEVIGVVLDEADQML 160

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             G Q+ ++           ++  TP  R T + ++    +I +I +K   ++P K ++ 
Sbjct: 161 DMGFQEDMEA----------ILKETPTERQTAMFSATISREIERIAQKYM-KQPEKIMVA 209

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTS 516
                   I +    +   +K   +C  ++  K           RSV E    L     S
Sbjct: 210 QKALTVPQISQYYFEVKPHEKVEALCRILDMDKTDLGIIFCRTKRSVDELTEKLQNRGYS 269

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFG 572
           + AI HG +    ++ VM  F+N T  LL+AT V   GIDV D  ++    I E+ E++ 
Sbjct: 270 AAAI-HGDLKQTQRDRVMKKFRNRTIDLLVATDVAARGIDVNDVEMVMNYDIPEDFEYY- 327

Query: 573 LAQLHQLRGRVGRG 586
              +H++ GR GR 
Sbjct: 328 ---VHRI-GRTGRA 337


>gi|296114851|ref|ZP_06833499.1| primosome assembly protein PriA [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978557|gb|EFG85287.1| primosome assembly protein PriA [Gluconacetobacter hansenii ATCC
           23769]
          Length = 782

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 89/180 (49%), Gaps = 20/180 (11%)

Query: 275 KSQESAIKDILQDMSQKNRM-LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           + +++ +   L++   ++R  + +L+G  GSGKT + + A+AA +E G QA+++ P I +
Sbjct: 251 EGEQADVARALRNTVAEDRFSITLLEGVTGSGKTEIYMEAIAACLEKGLQALVLLPEIAL 310

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
            +Q    F +++     +    +   +    RR     +A G A +++G   ALF   + 
Sbjct: 311 SSQWTGRFARRFGTQPALWHSDLGTRL----RRVTWRSVADGAARVVVGARSALF---LP 363

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKA----------TAPHVLLMTATPIPRTLVLTSLG 441
           + +L L+IVDE+H    +Q   +T  A           A  ++L++ATP   TL     G
Sbjct: 364 FARLGLIIVDEEHETSFKQEEGVTYNARDMAVVRARMDAAPIVLVSATPSLETLANVGAG 423


>gi|325983359|ref|YP_004295761.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325532878|gb|ADZ27599.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 457

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 143/334 (42%), Gaps = 38/334 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT----LVALIAMAAAVE---AGGQA 324
           +PT  Q+ A+ +++           +     G+GKT    L AL  +A   +    G + 
Sbjct: 23  TPTPIQQQAVPELIAGHDV------MASAQTGTGKTAAFMLPALHTLATPAQIRSRGPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  E  KKY +   +I V  I G MP   + K L +       I++ T 
Sbjct: 77  LVLTPTRELALQVSEAAKKYGKYLPRINVVSILGGMPYPLQNKLLSQ----PVDILVATP 132

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVL 437
               D IQ     + +L ++++DE  R      ++  +   A       ATP  R TL+ 
Sbjct: 133 GRLIDHIQRGRIDFKRLQMLVLDEADRMLDMGFIEDVETIAA-------ATPATRQTLLF 185

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE--- 494
           ++  D  I ++  K         V  P +++D + +RL        K   +   + +   
Sbjct: 186 SATLDNAIDRVAAKLLKTPQRIQVSSPKSKLDNIEQRLHYADDMSHKNRLLDHVLRDETL 245

Query: 495 KKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           K+   F +     +SL +   +   + A +HG M+  ++   +   +NG  ++L+AT V 
Sbjct: 246 KQAIVFTATKRDADSLADTLYAQGYAAAALHGDMNQRERNRTLTRLRNGGLRVLVATDVA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
             GIDV D + +I  +   F    +H++ GR GR
Sbjct: 306 ARGIDVADITHVINFDLPKFAEDYVHRI-GRTGR 338


>gi|121602645|ref|YP_988916.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120614822|gb|ABM45423.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain
           protein [Bartonella bacilliformis KC583]
          Length = 462

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 145/343 (42%), Gaps = 51/343 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q   I  +LQ       +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 28  APTPIQSETIPHVLQ----HKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRAKARMPRTL 81

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +   H+ + LER     A ++I T   
Sbjct: 82  ILEPTRELAAQVKENFDKYGINHRLNVALLIGGVSFDHQDRKLER----GADVLIATPGR 137

Query: 386 FQDSIQYYKLILV-----IVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPR 433
             D  +   L+L+     ++DE  R         +++  KLT        L  +AT  P 
Sbjct: 138 LLDHFERGTLLLMGVEILVIDEADRMLDMGFIPDIERICKLT--PFTRQTLFFSATMAPE 195

Query: 434 TLVLT-----SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL----SEGKK 484
            + LT     S   ++I+K  E    R   + ++   ++       L+ ++     E K 
Sbjct: 196 IIKLTEQFLHSPVCVEITK--ESSTARTITQRLVKSGSKAWHKRAVLRKLIHDENKELKN 253

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A   C + ++  E  FRS+V+        +  S+ ++HG M    + + +  FK     L
Sbjct: 254 AIVFCNRKKDISEL-FRSLVK--------YNFSVGVLHGDMDQHSRMNTLADFKENKLTL 304

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
           L+A+ V   G+D+ D S +   +        +H++ GR GR +
Sbjct: 305 LVASDVAARGLDIPDVSHVFNYDVPTHAEDYIHRI-GRTGRAK 346


>gi|320165620|gb|EFW42519.1| ATP-dependent RNA helicase DBP5 [Capsaspora owczarzaki ATCC 30864]
          Length = 488

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 157/366 (42%), Gaps = 66/366 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
           P+K QE+A+  +L +   KN    I Q   G+GKT   ++ M + ++        A +  
Sbjct: 132 PSKIQETALPMMLAN-PPKNL---IAQSQAGTGKTAAFVLGMLSRIDETKPYPQTAEV-- 185

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
                 + + K+T+ T ++   +   +P+        RI +   H+++GT    QD I  
Sbjct: 186 -----IQAMAKFTKITTLLA--VKDGVPKG------ARITN---HLVVGTPGTVQDLISK 229

Query: 393 YK-----LILVIVDEQHRFGVQQ-------RLKLTQKATAPHVLLMTAT--PIPRTLVL- 437
                  +++ ++DE  +   QQ       R+  T K T    L  +AT  P  R + L 
Sbjct: 230 RAFDPSHVVVFVLDEADQMLDQQGMVDISFRVHRTLKPTT-QCLFFSATFKPEIRDMALR 288

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEK 495
            + G  +  K+  +      IK V I  +   +  E L  +  L    +A   C      
Sbjct: 289 VAGGSANTIKLQRQELALDRIKHVCIMCDSEAKKFEALSDIYGLVNVGQAIIFC------ 342

Query: 496 KESNFRSVVERFNSLHEHFTS---SIAIIHGR-MSDIDKESVMDSFKNGTCKLLIATTVI 551
                   V + +SL +  TS   ++++IHG+ M   D++ V+D F+ G  K+LIAT ++
Sbjct: 343 ------QTVAKVDSLAKQMTSAGHTVSVIHGQSMESADRDKVIDDFRKGATKVLIATNLL 396

Query: 552 EVGIDVVDASIII-IENAEHFG--------LAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
             GIDV+  +++I  E   HFG           +H++ GR GR       I   H   S+
Sbjct: 397 ARGIDVLQVNVVINYELPMHFGDKANEPDCETYMHRI-GRTGRFGRKGVAINFVHDARSR 455

Query: 603 NSYTRL 608
            +  ++
Sbjct: 456 QAMDQI 461


>gi|296121937|ref|YP_003629715.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296014277|gb|ADG67516.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 395

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 139/319 (43%), Gaps = 38/319 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   GSGKT   ++ +   V+A     QA+++ P   L+QQ  E   + +    +   
Sbjct: 47  IGQARTGSGKTAAFVLPILERVDAEKGYPQALVLTPTRELSQQIAEEASRLSLKHPLRSV 106

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF-- 406
              G     + R  +  +  G A ++IGT     D +Q       +L +V++DE  R   
Sbjct: 107 CCVGGR---NIRPQITDLKKG-AQLVIGTPGRIIDLMQRGELDTSRLKMVVLDEADRMLD 162

Query: 407 -GVQQRLK--LTQKATAPHVLLMTAT---PIPRTLVLTSLGD---IDISKITEKPAGRKP 457
            G +  ++  L +  T    LL++AT   P+ R L    + D   +D+S I      +  
Sbjct: 163 IGFRPDIERILRKCPTERQTLLLSATLPAPVAR-LAQKYMNDPERVDVSHIGAD--SQNS 219

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           I    +P+++  +    ++V+  E  +   +  + +   E  +R    R           
Sbjct: 220 ITQFYVPVDQDRKFRTLIRVLSQEKPQQVLVFTRTKRGAEEVYRKFSGRL--------PR 271

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  IHG +S   +E V+  F++G  +LLIAT V+  GID+   S I+  +        +H
Sbjct: 272 IGFIHGDLSQNLREGVLSRFRDGRLRLLIATDVMGRGIDISGISHIVNYDVPMDCDDYVH 331

Query: 578 QLRGRVGR---GEEISSCI 593
           ++ GR GR    E+I S I
Sbjct: 332 RI-GRTGRLSSTEKIGSAI 349


>gi|209965537|ref|YP_002298452.1| primosome assembly protein PriA [Rhodospirillum centenum SW]
 gi|209959003|gb|ACI99639.1| primosomal protein N' [Rhodospirillum centenum SW]
          Length = 748

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 9/139 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +  Q +A + + + ++       +L G  GSGKT V   A+AAA+ AG QA+++ P I +
Sbjct: 214 SPPQAAAAETLREKVAAGAYSATLLDGVTGSGKTEVYFEAIAAALRAGRQALVLLPEIAL 273

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F +++             ++P   RR     +A G+  +++G   ALF   + 
Sbjct: 274 SPQSLDRFARRFGARPA----EWHSDLPPPLRRNTWRAVASGEVRVVVGARSALF---LP 326

Query: 392 YYKLILVIVDEQHRFGVQQ 410
           Y  L L+IVDE+H    +Q
Sbjct: 327 YPDLGLIIVDEEHEPAFKQ 345


>gi|149178000|ref|ZP_01856597.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
 gi|148843193|gb|EDL57559.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
          Length = 418

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 132/305 (43%), Gaps = 30/305 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + +   ++    G QA+I+AP   L++Q    I+K   +  + + 
Sbjct: 56  IGQARTGTGKTAAFSLPVLQQLDLRRPGMQALILAPTRELSEQVAAEIRKLCTSKSLSIA 115

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRF-- 406
           ++ G  P   +   L++     A I +GT     D I     Q   L  V++DE  R   
Sbjct: 116 VLVGGKPVRPQENQLKK----GAQIAVGTPGRVIDHINRGNLQLGTLGFVVLDEADRMLD 171

Query: 407 -GVQQRLK--LTQKATAPHVLLMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            G +  ++  L +       LL++AT   P+ R L    + +  +  ++E       I  
Sbjct: 172 IGFRPDIEKILRKCPEKRQTLLLSATLPPPVER-LANRYMQNPVMIDLSEDKVSVDAIDQ 230

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             I ++  D  I+ L  +L + +    I         +  +   ++ + +       +A 
Sbjct: 231 YYITVDP-DRKIKLLSRLLFQERPKQTIV-------FTRTKRGADKLDRIFSKKLKEVAA 282

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG +    ++ V+  F+ G  +LLIAT V+  GIDV   S II  +   F    +H++ 
Sbjct: 283 IHGDLPQPKRDRVLKKFREGKIRLLIATDVMGRGIDVSGISHIINFDIPEFSDDYVHRI- 341

Query: 581 GRVGR 585
           GRVGR
Sbjct: 342 GRVGR 346


>gi|153801803|ref|ZP_01956389.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae MZO-3]
 gi|124122637|gb|EAY41380.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae MZO-3]
          Length = 428

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 119/278 (42%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E + +      +    + G
Sbjct: 66  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCG 125

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +A ++ AL        +I++ T      L Q  ++  ++  +++DE  R        
Sbjct: 126 GVDKAEQQNALAE----NPNILVATTGRLFDLTQSGLRLNRVTTLVLDEADR-------- 173

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 174 LLDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAV 233

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +      +HG  S
Sbjct: 234 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKS 293

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +E+ +  FKNGT ++LIAT ++  GI +    ++I
Sbjct: 294 QTQREAALAEFKNGTTQVLIATDLLARGIHIEQLPVVI 331


>gi|259013615|gb|ACV88438.1| AT04852p [Drosophila melanogaster]
          Length = 390

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 39/283 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q    +    +  ++   
Sbjct: 71  IAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSH 130

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-------QYYKL-ILVIVDEQHR 405
              G      R  A  RI     H+++GT     D I       QY KL +L   DE   
Sbjct: 131 ACIGGT--NVREDA--RILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLS 186

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + +++   K   P   V+L++AT  P  L ++            +   R P+    I
Sbjct: 187 RGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVS------------RCFMRDPVS---I 231

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--SNFRSVVERFNSLHEHFTSSIAII 521
            + + +  +E +K      K+  W    + +  +  S  +SV+  F + H +FT  ++ +
Sbjct: 232 LVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVI--FCNTH-NFT--VSAM 286

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           HG M   D+E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 287 HGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 329


>gi|121707307|ref|XP_001271794.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|143359800|sp|A1CHL3|PRP28_ASPCL RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|119399942|gb|EAW10368.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 798

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 129/299 (43%), Gaps = 45/299 (15%)

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAH---GQA 376
           G  A+++AP   LAQQ     KK+TQ     +V I+ G+        +LE  A+     A
Sbjct: 444 GPYAIVLAPTRELAQQIEIEAKKFTQPLGFNVVSIVGGH--------SLEEQAYSLRNGA 495

Query: 377 HIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQ-------RLKLTQKA--- 418
            III T     D I+   L+L     +I+DE  R    G ++        L +T +    
Sbjct: 496 EIIIATPGRLVDCIERRILVLSQCCYIIMDEADRMIDLGFEEPVNKILDALPVTNEKPDS 555

Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             A +   M +    +T++ T+     + +I  K   R  I T+      +D V +R+++
Sbjct: 556 DEAENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEL 615

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH----------EHFTSSIAIIHGRMSD 527
           +  E K+   +   +       FR  +  F ++           +H   S   +HG  + 
Sbjct: 616 IAGEDKRKKRLADIL---SSGEFRPPIIVFVNIKRNCDAIAREIKHMGFSSVTLHGSKTQ 672

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +E+ + S +NG+  +L+AT +   GIDV D S+++  N      +  H++ GR GR 
Sbjct: 673 DQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRI-GRTGRA 730


>gi|94501739|ref|ZP_01308253.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
 gi|94426139|gb|EAT11133.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
          Length = 449

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 151/362 (41%), Gaps = 47/362 (12%)

Query: 261 IAQKILRNI-PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM----- 314
           + Q+IL+ I     TK+ +   + I + + Q++ M+       GSGKT   ++ M     
Sbjct: 7   LDQRILKGIEALGFTKATDVQQQTIPEALKQQDLMV---CARTGSGKTAAFVVPMLQHLL 63

Query: 315 -AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
              A  +G +A+I+ P   LA+Q  +  +   + T I   +ITG   +   + AL R   
Sbjct: 64  THKAPNSGTRALILVPTRELAKQLLKQCQALAKFTGIQSGMITGGQ-EFKFQAALFR--- 119

Query: 374 GQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATA----P 421
               III T     D ++  K ++      I+DE  R    G ++ +     A +    P
Sbjct: 120 KNPEIIIATPGRLIDHLKQKKDLMEDVEYFILDEADRMLDMGFEEDVLTIANACSGKAKP 179

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             LL +AT   R L           K   K     P + V+         IE+  ++  +
Sbjct: 180 QTLLFSATLQQRGL-----------KHVIKQIQNDPEEIVVDSFRGEHSNIEQHYMLADD 228

Query: 482 GKKAY----WICPQIEEKKESNFRSVVERFNSLHEHFTS----SIAIIHGRMSDIDKESV 533
            K       W+    E ++   F +  E+    + HF S     +  +HG M+  ++  V
Sbjct: 229 DKHKQRILTWLLSNEEYRQAIIFTNTKEKTEQTY-HFLSYHNVEVGYLHGDMTQDERNHV 287

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M   +NG  K+L+AT V   G+D+    ++I  +    G   +H++ GR GR E   S I
Sbjct: 288 MTQMRNGRFKVLVATDVAARGLDIQSIDLVINFDMARSGDDYVHRI-GRTGRAEASGSAI 346

Query: 594 LL 595
            L
Sbjct: 347 SL 348


>gi|116252340|ref|YP_768178.1| cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256988|emb|CAK08082.1| putative cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 521

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 150/363 (41%), Gaps = 50/363 (13%)

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++QK+L  +  +    PT  Q  AI   L+    +  +  I Q   G+GKT   ++ M +
Sbjct: 15  LSQKVLSAVTDAGYTIPTPIQAGAIPFALE----RRDICGIAQ--TGTGKTASFVLPMLS 68

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q  E  +KY +N ++ V ++ G +    + + LER
Sbjct: 69  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER 128

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-L 424
                A ++I T     D  +  KL++     +++DE  R        +      P +  
Sbjct: 129 ----GADVLICTPGRLLDHFERGKLLMSGVEILVIDEADR--------MLDMGFIPDIER 176

Query: 425 LMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           +    P  R TL  ++    +I K+ ++         V  P +    V +R   V S GK
Sbjct: 177 IAKMIPFTRQTLFFSATMPSEIQKLADRFLQNPERIEVAKPASAAATVTQRF--VASHGK 234

Query: 484 K-------AYWICPQIEEKKESNF----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
                      +  Q E K    F    + V + F SL  H   S+  +HG M    +  
Sbjct: 235 DYEKRAVLRELVRAQTELKNAIIFCNRKKDVADLFRSLERH-GFSVGALHGDMDQRSRTM 293

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            + SF++G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR     + 
Sbjct: 294 TLQSFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRI-GRTGRAGRSGAA 352

Query: 593 ILL 595
             L
Sbjct: 353 FTL 355


>gi|306832864|ref|ZP_07465998.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           bovis ATCC 700338]
 gi|304425003|gb|EFM28135.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           bovis ATCC 700338]
          Length = 447

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 137/322 (42%), Gaps = 39/322 (12%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           +   GSGKT   L+ +   ++      Q VI AP   LA Q Y+  K+  + ++  + ++
Sbjct: 44  ESKTGSGKTHTFLLPIFEKLDENSNNVQVVITAPSRELATQIYQATKQIAEKSETEIRVV 103

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQ 410
              +    + + +E++   Q HI+IGT     D      ++ YK    +VDE        
Sbjct: 104 -NYVGGTDKLRQIEKLKSSQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMG 162

Query: 411 RLKLTQK--ATAP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            L    K   T P    +L+ +AT IP+ L         + K    P   K IKT  +  
Sbjct: 163 FLDTVDKIAGTLPKDVQILVFSAT-IPQKLQPF------LKKYLTNPVMEK-IKTTTVIA 214

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSS-- 517
           + ID  +     V ++G+        +E  K  N      F +  ER + LH +  S+  
Sbjct: 215 DTIDNWL-----VSTKGRDKN--AQILEITKALNPYLAMIFVNTKERADELHSYLVSNGL 267

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A IHG +   +++  M+  K  + + ++AT +   GID+   S +I +         +
Sbjct: 268 KVAKIHGDIPPRERKRTMNQIKKLSYEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFV 327

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           H++ GR GR +     I LY P
Sbjct: 328 HRV-GRTGRNDLNGIAITLYKP 348


>gi|113868675|ref|YP_727164.1| ATP-dependent helicase [Ralstonia eutropha H16]
 gi|113527451|emb|CAJ93796.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Ralstonia eutropha H16]
          Length = 520

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/292 (20%), Positives = 126/292 (43%), Gaps = 29/292 (9%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LA Q Y+ + +Y ++T +   ++ G +    +  AL R       I++ T
Sbjct: 116 RALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRR----GVEILVAT 171

Query: 383 HALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLV 436
                    Q S+   ++ ++++DE  R      L   Q+       ++   P  R TL+
Sbjct: 172 PGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQR-------IINLLPAHRQTLL 224

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I ++      + P+   +   N  +E + ++  ++ +G K   +   ++++ 
Sbjct: 225 FSATFSPEIKRLASSYL-KHPVTIEVARSNSTNENVRQMVYLVEDGHKQAAVVHLLKQRA 283

Query: 497 ESNF-RSVVERFNS------LHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E    R  +   NS      L  H      + A IHG  +  ++   ++ FK+GT   L+
Sbjct: 284 EQGLSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKSGTIDALV 343

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT V   G+D+ D   ++  +  +     +H++ GR GR       + +Y P
Sbjct: 344 ATDVAARGLDIPDMPCVVNFDVPYSAEDYVHRI-GRTGRAGASGDALSIYVP 394


>gi|256847374|ref|ZP_05552820.1| primosomal protein N [Lactobacillus coleohominis 101-4-CHN]
 gi|256716038|gb|EEU31013.1| primosomal protein N [Lactobacillus coleohominis 101-4-CHN]
          Length = 808

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 108/249 (43%), Gaps = 40/249 (16%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+ A+  + Q +  +   + +LQG  GSGKT V L AMA A++ G  A++M P   L  Q
Sbjct: 276 QQRALASVKQSIDNRQSTVFLLQGVTGSGKTEVYLQAMAHALQQGKTALLMVPEISLTPQ 335

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
             E ++    +    V ++   +    R     RI  G+A +++G  +     ++   + 
Sbjct: 336 IAERVRARFSSQ---VAVLHSGLSAGERYDEWRRIERGEAQVVVGARSAVFAPLK--NIG 390

Query: 397 LVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           ++I+DE+H          R+  ++  K   K     +LL +ATP   +      G+  + 
Sbjct: 391 IIIMDEEHETSYKQDDAPRYHSREVAKWRAKYHHAPLLLGSATPSLESYSRALAGNYQLL 450

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
           ++  +   ++P+     PI  +D                  + P+++ + ESNF + +  
Sbjct: 451 QLPHR-VNKRPLP----PIKIVD------------------MRPEVQRRGESNFSTAL-- 485

Query: 507 FNSLHEHFT 515
             +L E  T
Sbjct: 486 LTALQERLT 494


>gi|313159432|gb|EFR58795.1| putative DEAD-box ATP-dependent RNA helicase CshA [Alistipes sp.
           HGB5]
          Length = 653

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 136/317 (42%), Gaps = 28/317 (8%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE-AGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + +  ++E A G  QA+I+ P   LA Q  E +  Y +  ++ + 
Sbjct: 47  IAQSQTGTGKTAAYGLPILQSLEPARGPVQAIILVPTRELALQAAEELLSYNREKRLSIT 106

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
            I G    + +   L R+A G   I++GT    +D I+   L        +L   DE   
Sbjct: 107 AIYGGAAMSEQ---LRRLAKG-VDIVVGTPGRVRDHIRRGTLKLENVRYLVLDEADEMLN 162

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVL--TSLGDIDISKITEKPAGRKPIKTV 461
            G  + ++  ++  +    VLL +AT   R + L  T + D +I ++  K       + +
Sbjct: 163 MGFVEDVEEIMSHTSEERRVLLFSATMPERIIRLSKTYMRDTEIVRVENKQLTTDLTEQI 222

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
              +   D+     +++  E +    I  + +   +     +  R  +          ++
Sbjct: 223 YFEVREADKFDALTRIIDVEPEFYGIIFARTKIGADETVSRLAARGYAAE--------VL 274

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG +S   +E ++  F++ +  +L+AT V   GIDV + + +I  +      + +H++ G
Sbjct: 275 HGDVSQAQREKILRKFRDRSVNILVATDVAARGIDVGNLTHVINYSLPQDSESYVHRI-G 333

Query: 582 RVGRGEEISSCILLYHP 598
           R GR  +  + I    P
Sbjct: 334 RTGRAGKQGTAITFVSP 350


>gi|195342874|ref|XP_002038023.1| GM18587 [Drosophila sechellia]
 gi|195576880|ref|XP_002078301.1| GD23375 [Drosophila simulans]
 gi|194132873|gb|EDW54441.1| GM18587 [Drosophila sechellia]
 gi|194190310|gb|EDX03886.1| GD23375 [Drosophila simulans]
          Length = 403

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 126/294 (42%), Gaps = 48/294 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q    +    +  ++   
Sbjct: 71  IAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSH 130

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-------QYYKL-ILVIVDEQHR 405
              G      R  A  RI     H+++GT     D I       QY KL +L   DE   
Sbjct: 131 ACIGGT--NVREDA--RILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLS 186

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + +++   K   P   V+L++AT  P  L ++            +   R P+    I
Sbjct: 187 RGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVS------------RCFMRDPVS---I 231

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFN---SL 510
            + + +  +E +K      K+  W    + +  ++          N R  V++     SL
Sbjct: 232 LVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSL 291

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           H +FT  ++ +HG M   D+E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 292 H-NFT--VSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 342


>gi|49119283|gb|AAH73332.1| LOC398189 protein [Xenopus laevis]
          Length = 727

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 142/337 (42%), Gaps = 54/337 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE------AGGQA---VIMAPIGILAQQHYEFIKKYTQN 347
           ++Q   G+GKT    I +   +       A G+A   +I+ P   LA Q    I+  T+ 
Sbjct: 188 VVQARTGTGKTFSFAIPLVEKLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITK- 246

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +  A++         ++GT    +D +Q Y+L L     V++DE
Sbjct: 247 -KLKVSCFYGGTPYQQQVFAIK----DGIDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDE 301

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
                       V++ L +  KA     P  LL +AT  P  +   +           K 
Sbjct: 302 VDMMFDMGFSEQVEEILSVRYKADPEENPQTLLFSAT-CPDWMYNMA-----------KK 349

Query: 453 AGRKPIKTVIIPINRIDE---VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             RK  + + +  +R  +    +E L +  +  +KA  +   ++    S+ ++++   + 
Sbjct: 350 YMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQKAAVLGDLVQVYSGSHGKTIIFCDSK 409

Query: 510 LHEH--------FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           L  H           S   +HG +   ++E V+  F+ GT ++LIAT V   G+D+ +  
Sbjct: 410 LEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVD 469

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ++++ +A     A +H+  GR GR      CI LY P
Sbjct: 470 LVVLYSAPKEADAYVHR-SGRTGRAGRTGVCISLYEP 505


>gi|317128337|ref|YP_004094619.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315473285|gb|ADU29888.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 442

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 145/329 (44%), Gaps = 42/329 (12%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P  +EG IAQ    NI   PT+ QE  I  I      KN    I Q   G+GKT   L+ 
Sbjct: 15  PFLIEGLIAQ----NISL-PTEIQERLIPAI------KNGSDVIGQSQTGTGKTYAFLLP 63

Query: 314 MAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE--IITGNMPQAHRRKAL 368
           +   +   E   QAVI AP   LA Q Y  + K T + +  +E  ++ G      R + +
Sbjct: 64  ILDQINEDENETQAVITAPTRELASQLYYELNKLTSHAEKTIESQLVVGG---TDRLRMM 120

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAP-- 421
           E++ + + H+I+GT     D I    L +     ++VDE  +      ++   +A +   
Sbjct: 121 EKLKN-KPHVIVGTPGRVADMIDKQALNVREVNVLVVDEADQMLDMGFIEEVDRAASRMG 179

Query: 422 ---HVLLMTATPIPRTL---VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
               +L+ +AT IP  L   +   + +    ++  K    K IK  +IP    D   +R 
Sbjct: 180 DDLQMLVFSAT-IPEKLKPFLRKYMKNPKHVEVQPKDVSPKKIKHWLIP----DRDRDRK 234

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           ++++   KK       I   K+     V E    L++    ++ I+HG +S   ++ VM 
Sbjct: 235 EIIVDVSKKLNPYLAVIFTNKKETADEVYEEL--LNQGL--NVDIMHGGISPRQRKKVMK 290

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIII 564
             ++   + L+AT ++  GIDV   S II
Sbjct: 291 KLQDAEIQFLVATDLVARGIDVEGISHII 319


>gi|153803281|ref|ZP_01957867.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
 gi|153803543|ref|ZP_01958129.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
 gi|124120924|gb|EAY39667.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
 gi|124121185|gb|EAY39928.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
          Length = 406

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 119/278 (42%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E + +      +    + G
Sbjct: 44  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCG 103

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +A ++ AL        +I++ T      L Q  ++  ++  +++DE  R        
Sbjct: 104 GVDKAEQQNALAE----NPNILVATTGRLFDLTQSGLRLNRVTTLVLDEADR-------- 151

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 152 LLDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAV 211

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +      +HG  S
Sbjct: 212 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKS 271

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +E+ +  FKNGT ++LIAT ++  GI +    ++I
Sbjct: 272 QTQREAALAEFKNGTTQVLIATDLLARGIHIEQLPVVI 309


>gi|80477520|gb|AAI08449.1| LOC398188 protein [Xenopus laevis]
          Length = 768

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 144/331 (43%), Gaps = 42/331 (12%)

Query: 297 ILQGDVGSGKT------LVALIAMAAAVEAGGQA---VIMAPIGILAQQHYEFIKKYTQN 347
           ++Q   G+GKT      LV  ++      A G+A   +I+ P   LA Q    ++  T+ 
Sbjct: 230 VVQARTGTGKTFSFGIPLVERLSEDQQPLARGRAPRVIILTPTRELAIQITNELRSMTK- 288

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +  A++         ++GT    +D +Q Y+L L     V++DE
Sbjct: 289 -KLKVACFYGGTPYQQQVFAIK----DGIDFLVGTPGRIRDLVQNYRLDLTVLKHVVLDE 343

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIP----RTLVLTSLGDIDISKITEKPAGRKPI 458
                V     +        +L +   P P    +TL+ ++     +  + +K   RK  
Sbjct: 344 -----VDMMFDMGFSEQVEEILSVRYKPDPEENPQTLLFSATCPDWMYNVAKKYM-RKQY 397

Query: 459 KTVIIPINRIDE---VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           + V +  +R  +    +E L +  +  +KA  +   ++    S+ ++++   + L  H  
Sbjct: 398 EKVDLVGHRSQKAAITVEHLAIECNRSQKAAVLGDIVQVYSGSHGKTIIFCDSKLQAHEL 457

Query: 516 S--------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           S        S   +HG +   ++E V+  F+ GT ++LIAT V   G+D+ +  ++++ +
Sbjct: 458 STNCGSLKQSAKPLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYS 517

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           A     A +H+  GR GR      CI LY P
Sbjct: 518 APKEADAYVHR-SGRTGRAGRTGVCISLYEP 547


>gi|254577069|ref|XP_002494521.1| ZYRO0A03476p [Zygosaccharomyces rouxii]
 gi|238937410|emb|CAR25588.1| ZYRO0A03476p [Zygosaccharomyces rouxii]
          Length = 399

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 147/343 (42%), Gaps = 58/343 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q  AI  I+   S K+    I Q   G+GKT    I M   +E      QA++++
Sbjct: 45  APSSIQSRAITQII---SGKDV---IAQAQSGTGKTATFTIGMLQVLELKRKDLQALVLS 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +    +TG       +  L+RI     H++ GT     D
Sbjct: 99  PTRELASQSCQVVSNLGDYLNVKAFALTGG---KALKDDLKRIQSSGCHVVSGTPGRVLD 155

Query: 389 SI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            I     Q   + ++++DE     + + L   Q+    + +     P  + +V+++    
Sbjct: 156 LIKRQVVQTRNVQVLVLDEADEL-LSETLGFKQQI---YDIFARLPPGCQVVVVSATMSR 211

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           DI ++T+K     P+K ++          +R ++ L EG   Y++    EE K   F ++
Sbjct: 212 DILEVTKKFMS-DPVKILV----------KRDEISL-EGISQYYVDVSKEEWK---FDTL 256

Query: 504 VERFNSL-------------------HEHFTSSIAII--HGRMSDIDKESVMDSFKNGTC 542
            + ++SL                    +   S+ A++  HG M   D++ VM+ F+ G  
Sbjct: 257 CDLYDSLTITQCVIFCNTRKKVDWLSKKLIQSNFAVVSMHGDMKQEDRDKVMNDFRTGHS 316

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   GIDV   S++I  +        +H++ GR GR
Sbjct: 317 RVLISTDVWARGIDVQQISLVINYDMPEIMENYIHRI-GRSGR 358


>gi|195069886|ref|XP_001997052.1| GH22580 [Drosophila grimshawi]
 gi|193891570|gb|EDV90436.1| GH22580 [Drosophila grimshawi]
          Length = 793

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 134/330 (40%), Gaps = 59/330 (17%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ      ++  NTQ+   
Sbjct: 192 TGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQAVASEFGSNTQVRNT 251

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF-- 406
            I G  P+  + + LER       I+I T       L + +    +   +++DE  R   
Sbjct: 252 CIFGGAPKGQQARDLER----GVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLD 307

Query: 407 -GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KITE 450
            G + +++            L   AT P  +   A       +  ++G + +S    I +
Sbjct: 308 MGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQ 367

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
                  I  V     +I ++++ L  +  E +    I   +E KK      V E   ++
Sbjct: 368 -------IVDVCDESEKIAKLVQLLTQISGENETKTIIF--VETKKR-----VDEITRNI 413

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IE 566
                 + AI HG  S  +++ V+ SF+NG   +L+AT V   G+DV D   +I      
Sbjct: 414 SRQGWRACAI-HGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPS 472

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           N+E +    +H++ GR GR     +   L+
Sbjct: 473 NSEDY----VHRI-GRTGRSNNTGTAYTLF 497


>gi|218283314|ref|ZP_03489366.1| hypothetical protein EUBIFOR_01955 [Eubacterium biforme DSM 3989]
 gi|218215942|gb|EEC89480.1| hypothetical protein EUBIFOR_01955 [Eubacterium biforme DSM 3989]
          Length = 388

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 153/356 (42%), Gaps = 59/356 (16%)

Query: 260 KIAQKILRNIP---FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           K+  K  +  P   +  T SQ+ A  D+ + +S    +  IL    G+GKT +   ++  
Sbjct: 42  KLMHKTWKGKPKLDYELTASQKLASHDVYKHLSNGKDV--ILYASTGAGKTEICFESICG 99

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            + A G+ V  A                    Q+++EI T  + +A    ++  +A G  
Sbjct: 100 YL-AQGKKVGFA----------------ISRRQVVLEIAT-RLRKAFPELSICEVAQGYT 141

Query: 377 HI------IIGTHALFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMT 427
            I      +  TH L++     Y   L+I+DE   F   G +    +  +A     L+++
Sbjct: 142 QITDADIIVCTTHQLYRYP---YAFDLLILDELDAFPFAGNEVLQAIANQACVGQKLMLS 198

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI----ERLKVVLSEGK 483
           ATP   ++ L      ++  + E+P     I   +I ++   +V+    E +K    + K
Sbjct: 199 ATPDEESMRLVEEKKTELVCLFERPHKHPLIVPKVIQVSVFLQVLIVIYECIKFC-RDNK 257

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +     P+   K++  +  ++         F  + +++H   S  +K+ ++D F+N   +
Sbjct: 258 QTLVFVPR---KRDGTWLKMILNL------FVKT-SLVHS--STENKDEILDCFRNKELE 305

Query: 544 LLIATTVIEVGIDVVDASIIIIE-NAEHFGLAQLHQLRGRVGR------GEEISSC 592
           +L+ TT++E GI +    +++ + N   F  A L Q+ GRVGR      GE I  C
Sbjct: 306 VLVCTTLLERGITIPSVQVVVFKGNHSVFTTASLIQIFGRVGRSFKDPKGEGICLC 361


>gi|330925821|ref|XP_003301209.1| hypothetical protein PTT_12655 [Pyrenophora teres f. teres 0-1]
 gi|311324270|gb|EFQ90696.1| hypothetical protein PTT_12655 [Pyrenophora teres f. teres 0-1]
          Length = 690

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 164/412 (39%), Gaps = 66/412 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKT------LVALIAMAAAVEA---- 320
           PT  Q +AI   LQ         R L G    GSGKT      L+A I+    ++A    
Sbjct: 292 PTPIQRAAIPIALQ--------CRDLIGVAKTGSGKTAAFLLPLLAYISQLPPLDAINRH 343

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G  A+I+AP   LAQQ  E  +K+         ++ G     H  +         A II
Sbjct: 344 DGPYALILAPTRELAQQIEEEARKFATPLGFRTAVLVG----GHSIEEQSFQMRDGAEII 399

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHR----------------FGVQQRLKLTQKA 418
           I T     D I+   L+L     VI+DE  R                  V      T++A
Sbjct: 400 IATPGRLNDCIERRVLVLSQCTYVIMDEADRMIDMGFEEPVNKILAALPVSNEKPDTEEA 459

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P    M      +T++ T+     + +I ++ + R  I T+       D V +R++ +
Sbjct: 460 EDPDA--MKRGLYRQTMMYTATMPPALERIAKQYSRRPAIVTIGNLGEATDTVEQRVEFI 517

Query: 479 LSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
             E K+   +   +   + +       N +   +      +H   S A +HG  +   +E
Sbjct: 518 QGEEKRKKRLQEILTSGEFAPPIIVFVNIKRNCDAIARDIKHMGFSSATMHGSKTQEQRE 577

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           + + + K+G   +L+AT +   GID+ D S+++  N      A  H++ GR GR ++  +
Sbjct: 578 AALAALKSGQTNVLVATDLAGRGIDIPDVSLVVNFNMPSSIEAYTHRI-GRTGRQDKKGT 636

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ--------RKEGEILG 635
            I  +    +   Y    +L  T+       EDL++        +K GE++G
Sbjct: 637 AITFWGNEDADVLYDLKQIL--TKSNLSKVPEDLRKHEAAQQKGKKRGEVMG 686


>gi|239831816|ref|ZP_04680145.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
 gi|239824083|gb|EEQ95651.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
          Length = 484

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 150/356 (42%), Gaps = 47/356 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+    +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE----RKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFAKYGINQRLNVALLIGGVSFDDQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPR 433
             D  +  KL+L     +++DE  R         +++  KL         L  +AT  P 
Sbjct: 134 LLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTR--QTLFFSATMPPE 191

Query: 434 TLVLT-----SLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
              LT     S   ++++K   T K   ++ +K+     ++   + + ++      K A 
Sbjct: 192 ITKLTEQFLHSPTRVEVAKASSTAKTVTQRLVKSTKKDWDKRAVLRDLIRAEGDTLKNAI 251

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C        +  + V E F SL  H  ++ A +HG M    + +++ +FK+G  +LL+
Sbjct: 252 IFC--------NRKKDVSELFRSLTRHEFNAGA-LHGDMDQRARMTMLSNFKDGKLQLLV 302

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           A+ V   G+D+ D S +   +        +H++ GR GR         +  P  +K
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDIPIHSEDYVHRI-GRTGRAGRSGKAFTIVTPSDTK 357


>gi|332202625|gb|EGJ16694.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA41317]
          Length = 461

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 154/352 (43%), Gaps = 38/352 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + F+ PT+ Q+  I  +L       R L + +   GSGKT   L+ +   ++     
Sbjct: 16  LKELKFTTPTEVQDKLIPIVLA-----GRDL-VGESKTGSGKTHTFLLPIFQQLDEASDS 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHII 379
            QAVI AP   LA Q Y+  ++ + ++ + V ++   G   +A   + +E++A  Q HI+
Sbjct: 70  VQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKA---RQIEKLASNQPHIV 126

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTAT 429
           IGT     D ++   L +      +VDE         L+   K           ++ +AT
Sbjct: 127 IGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSAT 186

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            IP+ L         + K    P   K IKT  +  + ID  +   K    +  + Y + 
Sbjct: 187 -IPQKLQPF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-HDKNAQIYQLT 237

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             ++      F +   R + LH + T+    +A IHG ++  +++ +M+  +N   + ++
Sbjct: 238 QLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 298 ATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|307708913|ref|ZP_07645373.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
 gi|307620249|gb|EFN99365.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
          Length = 447

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 136/315 (43%), Gaps = 31/315 (9%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT-- 356
            GSGKT   L+ +   ++      QAVI AP   LA Q Y+  ++   ++ + V ++   
Sbjct: 47  TGSGKTHTFLLPIFQQLDEASDSVQAVITAPSRELATQIYQAARQIAAHSDVEVRVVNYV 106

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQR 411
           G   +A   + +E++A  Q HI+IGT     D ++      +K    +VDE         
Sbjct: 107 GGTDKA---RQIEKLASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGF 163

Query: 412 LKLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           L+   K           ++ +AT IP+ L         + K    P   K IKT  +  +
Sbjct: 164 LETVDKIAGSLPKDLQFMVFSAT-IPQKLQPF------LKKYLSNPVMEK-IKTKTVISD 215

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHG 523
            ID  +   K    +  + Y +   ++      F +   R + LH + T+    +A IHG
Sbjct: 216 TIDNWLISTKG-RDKNAQIYQLTQLMQPYLAMIFVNTKTRADELHAYLTAQGLKVAKIHG 274

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            ++  +++ +M+  KN   + ++AT +   GID+   S +I +         +H++ GR 
Sbjct: 275 DIAPRERKRIMNQVKNLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRT 333

Query: 584 GRGEEISSCILLYHP 598
           GR     + I LY P
Sbjct: 334 GRNGLPGTAITLYQP 348


>gi|227890338|ref|ZP_04008143.1| possible ATP-dependent RNA helicase [Lactobacillus johnsonii ATCC
           33200]
 gi|227849152|gb|EEJ59238.1| possible ATP-dependent RNA helicase [Lactobacillus johnsonii ATCC
           33200]
          Length = 420

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 125/305 (40%), Gaps = 24/305 (7%)

Query: 302 VGSGKTLV-ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G+GKTL   L  M    E GG+ +I+ P   LA Q    +  Y ++  +    + G   
Sbjct: 52  TGTGKTLAYGLPVMERIAEIGGRGIILEPTTELAIQTRNNLLPYAKSLGLKTIALVG--- 108

Query: 361 QAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
             +R++ LER+   +  III T   F     ++ I+Y  +  +++DE        +L L 
Sbjct: 109 AGNRKRQLERLKKEKPEIIIATSGRFFDFLSENRIKYQDINALVIDEADDILEFTKLDLL 168

Query: 416 QK-----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
                  ++   +LL  A+    T     L +     I  +P  +  +K   + ++  +E
Sbjct: 169 SSLGQNLSSTAQILLFGASESEITKDAEDLFNHTFLLIDVRPEQKSEVKHCFLQVS--NE 226

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
              +    L++  K   I     +  ES       RF  +  H  +  A++    S  ++
Sbjct: 227 YKMQFLQRLAKLDKFKGIL--FFDSTESEM-----RFVRIFSHSKTKFAVLSNETSKQNR 279

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E ++  F+ G  K L AT +   G+D+ D S +I           LH+  GR GR  +  
Sbjct: 280 EKILSDFRAGRIKFLFATDLAARGLDLPDVSYVINFEIPSEVNTYLHR-SGRTGRMNKSG 338

Query: 591 SCILL 595
           + + L
Sbjct: 339 TVVTL 343


>gi|251778058|ref|ZP_04820978.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082373|gb|EES48263.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 812

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 148/344 (43%), Gaps = 48/344 (13%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           K QE+ I +I+      N +L I+    G GK++   +    A+   G  ++++P+  L 
Sbjct: 20  KGQENIISNIIDG----NDVLAIMP--TGGGKSICYQVP---ALIFEGLTIVISPLISLM 70

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII-IGTHAL----FQDS 389
           +   + +K    N     E I  ++  A   + ++ I +GQ  I+ +    L    F + 
Sbjct: 71  KDQVDALKDMGING----EFINSSISSAEENRVIDNIRNGQCKILYVAPERLESLNFLNV 126

Query: 390 IQYYKLILVIVDEQH---RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI--D 444
           I    +  + +DE H   ++G   R   T+   +  + L+   PI      T+  ++  D
Sbjct: 127 ISECSVSQIAIDEAHCISQWGHDFRTSYTK--VSGFIKLLKTRPIITAFTATASEEVRED 184

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FR 501
           I ++       KP K  I   +R + +I     V+  G K  ++   I   KES+   + 
Sbjct: 185 IIRLLNL---NKP-KIFITGFDRENLLIN----VIKSGDKKSYLHNYINNNKESSGVIYA 236

Query: 502 SVVERFNSLHE---HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           +  +  + +HE   H   SI   H  +S+ D++   + F      +++AT    +GID  
Sbjct: 237 ATRKEVDKIHEELSHNGFSITKYHAGLSENDRKQNQEDFIYDRSNIMVATNAFGMGIDKP 296

Query: 559 DASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHP 598
           +   ++     H+ + +     +Q  GR GR  E S CILL+ P
Sbjct: 297 NIRFVV-----HYNMPKNIEGYYQEIGRAGRDGEKSECILLFSP 335


>gi|148553145|ref|YP_001260727.1| primosome assembly protein PriA [Sphingomonas wittichii RW1]
 gi|148498335|gb|ABQ66589.1| primosomal protein N' [Sphingomonas wittichii RW1]
          Length = 734

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L G  GSGKT V   A+A A+ AG Q +++ P   L +    F+K++      +     
Sbjct: 226 LLDGVTGSGKTEVYFEAVAEALRAGRQTLVLLPEIALTE---PFLKRFEARFGHLPVAWH 282

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             + Q+ RR+A   I HG+A +++G   ALF   + Y  L L+IVDE H    +Q
Sbjct: 283 SELRQSQRRRAWRGIVHGEAKVVVGARSALF---LPYRDLGLIIVDEAHETSFKQ 334


>gi|58263430|ref|XP_569125.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108386|ref|XP_777144.1| hypothetical protein CNBB3750 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687070|sp|Q5KME7|PRP5_CRYNE RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|50259829|gb|EAL22497.1| hypothetical protein CNBB3750 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223775|gb|AAW41818.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1072

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 142/335 (42%), Gaps = 59/335 (17%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+  L+ M   V          G  AV+M+P   LA Q Y+  + + +   I   
Sbjct: 449 TGSGKTVAFLLPMLRHVRDQRPVSGSEGPIAVVMSPTRELASQIYKECQPFLKVLNIRAS 508

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
              G    +    A+++     A ++I T     D +           +   +++DE  R
Sbjct: 509 CCVGGSSISEDIAAMKK----GAEVVICTPGRMIDLLTANNGRVTNVRRTTYIVMDEADR 564

Query: 406 F---GVQ-QRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
               G + Q +K+      +   +L +AT  P+T+   SL    + K  E   G +   +
Sbjct: 565 MFDMGFEPQVMKIINNVRPSAQKVLFSAT-FPKTM--ESLARRILVKPLEITVGGR---S 618

Query: 461 VIIPINRIDEVIE---------RLKVVLSEGKKAYWICPQIEEKKESNFRSV--VERFNS 509
           V+ P   ID+ +E         RL  +L E  +        E K E +FR++  V+R  S
Sbjct: 619 VVAP--EIDQRVEVRDGDTKFTRLLEILGEMGE--------EHKDEDDFRTLIFVDRQES 668

Query: 510 LHEHFTSSI------AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
             + F   +      A +HG    +D++  + +FKNG   +++AT+V   G+DV +  ++
Sbjct: 669 ADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNFKNGDVPIIVATSVAARGLDVKELKLV 728

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           I  +A +     +H+  GR GR     +CI    P
Sbjct: 729 INYDAPNHMEDYVHRA-GRTGRAGNKGTCITFITP 762


>gi|225678019|gb|EEH16303.1| ATP-dependent RNA helicase dbp3 [Paracoccidioides brasiliensis
           Pb03]
          Length = 486

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 43/326 (13%)

Query: 300 GDVGSGKTLV-ALIAMAAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +  +   +E  G        AVI+ P   LA Q Y+ + K+T N  + 
Sbjct: 114 AETGSGKTLAFGVPCIRKVLEINGSRSSSRISAVIITPTRELATQIYDQLIKFTPN-NVG 172

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
           +  I G   +  +R+AL++     A +++ T    +D     S++  K+  +++DE  R 
Sbjct: 173 IACIYGGASKDDQRRALKK-----ASVVVATTGRLKDFQGDESLRLDKVKYLVLDEADRM 227

Query: 407 ---GVQQRLKLTQKATAP----HVLLMTAT-PIP-RTLVLTSLGD---IDISKITEKPAG 454
              G +Q +K    A         ++ TAT PI  R L  T + D   I I  ++     
Sbjct: 228 LDKGFEQDIKDIVGAMPSSKKRQTVMFTATWPISVRKLAATFMKDHVTITIGDLSSDIRA 287

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSE---GKKAY-WICPQIEEKKESNFRSVVERFNSL 510
              IK  I+ + + ++   RL  +L++   GK A   +      KKE+   + +ERF   
Sbjct: 288 NTRIKQ-IVEVLKPEDKEHRLLSLLNQYQRGKNAMDKVLVFCLYKKEA---TRIERFIR- 342

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            + F   +A IHG M+  ++   +D+FK+G   LL+AT V   G+D+    +++      
Sbjct: 343 SKGF--KVAGIHGDMNQTERFKSLDAFKSGAVPLLVATDVAARGLDIPAVRLVLNVTFPL 400

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY 596
                +H++ GR GR       I ++
Sbjct: 401 TVEDYVHRI-GRTGRAGADGLAITMF 425


>gi|328711288|ref|XP_001948608.2| PREDICTED: ATP-dependent RNA helicase vasa, isoform A isoform 1
           [Acyrthosiphon pisum]
 gi|328711290|ref|XP_003244501.1| PREDICTED: ATP-dependent RNA helicase vasa, isoform A isoform 2
           [Acyrthosiphon pisum]
          Length = 579

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 131/320 (40%), Gaps = 48/320 (15%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +IM+P   LA Q  + + K T  T I   I+ G     H+R  L   A+G  HI++ T
Sbjct: 240 QCIIMSPTRELAIQIRDVVFKLTNGTCIKQSILYGGTATGHQRGTL---ANG-IHILVAT 295

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRF-------------------GVQQRLKLTQKA 418
                D      + +  L   ++DE  R                     V  R  L   A
Sbjct: 296 PGRLNDFVGRGYVSFNSLRFFVLDEADRMLDMGFKPDIEKILNHETMVDVNTRQTLLFSA 355

Query: 419 T-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
           T A  + +++   +    V  ++G+I            K +K  I  + + ++  E +KV
Sbjct: 356 TLADDIQMLSKAYLKPNYVFVAVGEI--------GGACKDVKQEIREVTKFEKKKELIKV 407

Query: 478 VLSEGK-KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           + S G  K   +   +E+K+ ++F   +  F S  ++ T+SI   HG     ++E  +  
Sbjct: 408 LESLGDCKGTMVF--VEQKRNADF---IAAFLSEKDYPTTSI---HGDREQPEREQALRD 459

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN   K+L+AT V   G+D+   + +I  +        +H++ GR GR       +  Y
Sbjct: 460 FKNNRMKILVATAVAARGLDIKGVNCVINFDMPSSIDEYVHRI-GRTGRLGNSGRAVSFY 518

Query: 597 HPPLSKN-SYTRLSVLKNTE 615
                 N S   + +LK  E
Sbjct: 519 DSTSDSNLSSDLVRILKQAE 538


>gi|116493012|ref|YP_804747.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC
           25745]
 gi|116103162|gb|ABJ68305.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC
           25745]
          Length = 453

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 143/324 (44%), Gaps = 43/324 (13%)

Query: 299 QGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   GSGKT   L+ +   ++      QAVI  P   LA Q YE  K+    +++ +EI 
Sbjct: 45  QSQTGSGKTHAFLLPIFNNIDPELNAIQAVITTPSRELAYQIYEDAKQLASASEVKIEI- 103

Query: 356 TGN-MPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQ 409
            GN +    +++ +E++ H Q  IIIGT     D     ++ + ++  +++DE       
Sbjct: 104 -GNYVGGTDKKRQVEKLGHHQPAIIIGTPGRVLDLLKERALNFRQVKYMVIDEADMTLDM 162

Query: 410 QRLKLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK-PIKTVII 463
             L    +  A       +L+ +AT IP+ L      ++ + K  + P   + P +T I 
Sbjct: 163 GFLNAVDQIAAAMPSKLQILVFSAT-IPQRL------NVFLKKYMDHPVIEEIPTETTIS 215

Query: 464 PINRIDEVIERLKVVLSEGKKA--YWICPQIEEKKESNFRSVVERFNSLHEHFTS---SI 518
           P   I  ++   K   S GK    Y +    E      F +  ER + L ++  +    +
Sbjct: 216 PT--IKNILISTK---SSGKNNLIYKLLTMGEPYLALVFTNTKERADELTDYLKAQGLDV 270

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE----NAEHFGLA 574
           A IHG +   +++ +M        + ++AT +   GID+   S++I +    + E F   
Sbjct: 271 AKIHGGIQPRERKRIMKDIHRLRYQYVVATDLAARGIDIDGVSLVINDDIPTDLEFF--- 327

Query: 575 QLHQLRGRVGRGEEISSCILLYHP 598
            +H++ GR GR     + I LY P
Sbjct: 328 -IHRV-GRTGRNGMSGTAITLYMP 349


>gi|190571463|ref|YP_001975821.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190357735|emb|CAQ55186.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 408

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 148/330 (44%), Gaps = 51/330 (15%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGKTL 308
           E+G+P  +     Q + +N    PT  Q  AI   LQ          IL     G+GKTL
Sbjct: 6   EMGLPTLLR----QALSKNNLCVPTPIQVQAIPLALQGKD-------ILGSAQTGTGKTL 54

Query: 309 VALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIVEIITGNMPQAHR 364
              I + A +    + G A+++ P   LA Q    I+K  +Q++ + V ++ G  P   +
Sbjct: 55  AFAIPLVAKLMNEPSIGSALVIVPTRELAHQVTSEIRKLLSQSSLLRVALLIGGEPIFRQ 114

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHR-----FGVQQRLKL 414
              L++    +  IIIGT     D I+   L+     ++++DE  R     FG+Q     
Sbjct: 115 LNQLQK----KPQIIIGTPGRIIDHIERKTLVTRNVGILVLDETDRMFDMGFGIQIEE-- 168

Query: 415 TQKATAPHVLLMTATP-IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                     +M   P I +TL+ ++    +I K+TEK    +P +  +         I+
Sbjct: 169 ----------IMKHLPKIRQTLMFSATLPGEIVKLTEKYLN-QPERVSVDCQATTSVKIK 217

Query: 474 RLKVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           +  V  SE +K   +  Q+ ++K S        R   +  + LH+   S++AI HG +  
Sbjct: 218 QEVVYASESEKYGKLVTQLCQRKGSIIIFVKTKRGADQLADKLHKDDYSALAI-HGDLRQ 276

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             +E V+DSF+ G  ++++AT V   G+D+
Sbjct: 277 HKRERVIDSFRRGRNQIMVATDVASRGLDI 306


>gi|325296847|ref|NP_001191665.1| ATP-dependent RNA helicase DDX5 [Aplysia californica]
 gi|304441889|gb|ADM34180.1| ATP-dependent RNA helicase DDX5 [Aplysia californica]
          Length = 600

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 164/378 (43%), Gaps = 47/378 (12%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE- 319
           +  +I RN   SPT  Q  A    L   S +N ++ I Q   GSGKTL  ++     V  
Sbjct: 116 VMSQIRRNSWQSPTAIQSQAWPIAL---SGRN-LVGIAQ--TGSGKTLGFILPAIVHVNH 169

Query: 320 -------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                   G   +++ P   LAQQ  E   ++ + +Q+    + G  P+  + + LER  
Sbjct: 170 QPYLEHGDGPIVLVLVPTRELAQQVLEVSNEFGRASQLKTACVYGGAPKGPQLRDLER-- 227

Query: 373 HGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPH 422
              A I I T     D ++  K  L     +++DE  R     F  Q R  L Q      
Sbjct: 228 --GAEICIATPGRLIDFLEAGKTNLRRTTYLVLDEADRMLDMGFEPQIRKILDQIRPDRQ 285

Query: 423 VLLMTATPIP---RTLVLTSLGD---IDISKITEKPAGRKPIKTVIIPIN--RIDEVIER 474
            L+ +AT  P   R L    L D   ++I  + +  A    ++ + + ++  + +++++ 
Sbjct: 286 TLMWSAT-WPKEVRRLAEEFLNDYIQVNIGAL-QLTANHNILQIIDVCMDHEKEEKLVKL 343

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  ++ E +    I   +E K++++   +  R     +     +  IHG  S  +++  +
Sbjct: 344 LNEIMQEKENKTLIF--VETKRKAD--DIARRM----KRDGWPVLSIHGDKSQQERDWAL 395

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F+NG   +L+AT V   G+DV D   +I  +  +     +H++ GR GR     +   
Sbjct: 396 NDFRNGRNPILVATDVASRGLDVEDIKFVINFDYPNCSEDYVHRI-GRTGRSTNTGTAYT 454

Query: 595 LYHPPLSKNSYTRLSVLK 612
            + P  +K +   ++VL+
Sbjct: 455 FFTPGNAKQASDLVNVLR 472


>gi|330873852|gb|EGH08001.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963764|gb|EGH64024.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 459

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 101/428 (23%), Positives = 186/428 (43%), Gaps = 57/428 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  ++   I V
Sbjct: 45  IAQAKTGSGKTAAFGIGLLNPINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 105 LTLCGGVSFGPQIGSLE---HG-AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRM- 159

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++   + I +++ K   R P +TV +   
Sbjct: 160 ------LDMGFYDSIADIIEQTPQRRQTLLFSATYPVGIKQLSSKFM-RDP-QTVKVEAL 211

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAI 520
             D  IE++   +S  ++   +   +   + ++   F    ++   + +H T+   S   
Sbjct: 212 HADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVG 271

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++ V+  F N +  +L+AT V   G+D +DA  +++ N E    +++H  R
Sbjct: 272 LHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVL-NVELARDSEIHIHR 329

Query: 581 -GRVGRGEEISSCILLYHP---------------PLSKNSYTRLSVLKNTE-----DGFL 619
            GR GR  E    + L  P               PL+   Y  LS+ +  +         
Sbjct: 330 VGRTGRAGETGIAVSLVAPSESQRARAIEELQKAPLNWQQYDNLSIKEGGKLLPAMTTLC 389

Query: 620 IAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAKHILTQDPDLTS 675
           I      + + G+ILG    ++G+    + +  + D  + + + R  AK  L +  +   
Sbjct: 390 IGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALERLNN-GK 448

Query: 676 VRGQSIRI 683
           ++G+S+R+
Sbjct: 449 IKGKSLRV 456


>gi|302774092|ref|XP_002970463.1| hypothetical protein SELMODRAFT_441099 [Selaginella moellendorffii]
 gi|300161979|gb|EFJ28593.1| hypothetical protein SELMODRAFT_441099 [Selaginella moellendorffii]
          Length = 1198

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 135/312 (43%), Gaps = 44/312 (14%)

Query: 300 GDVGSGKTLVALIAMAAAVE-------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           G+ GSGKTL  L+     +E       +G   +++AP   LA Q +E   K+ ++++I  
Sbjct: 224 GNTGSGKTLGYLLPAFMHLERRRNNPRSGPTVLVLAPTRELATQIHEEAVKFGRSSRITS 283

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G   +  + + +ER       I+I T     D ++  ++ L     +++DE  R  
Sbjct: 284 TCVYGGASKGPQLRDIER----GCDIVIATPGRLNDFLEMRRISLRQVSYLVLDEADRML 339

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI------TEKPAGRK 456
              F  Q R  + +       L+ TAT  P+  V    GD+ ++ I      T+  A  K
Sbjct: 340 DMGFEPQIRKIVNEVPVQRQTLMYTAT-WPKE-VRKIAGDLLMNPIQVNIGNTDDLAANK 397

Query: 457 PIKTVIIPINRIDEVIERLKVVL---SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            I   +  ++  D+   +L+++L     G K    C        S  R   +   SL   
Sbjct: 398 AITQCVEVVSPQDKA-RKLELILRTQEPGSKIIIFC--------STKRMCDQLARSLRRD 448

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F +    IHG  S  +++ V+  FK G   +L+AT V   G+D+ D  ++I  +      
Sbjct: 449 FGA--VAIHGDKSQGERDWVLSQFKAGKSPVLVATDVAARGLDIKDIRVVINYDFPTGVE 506

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 507 DYVHRI-GRTGR 517


>gi|116054184|ref|YP_788628.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254243551|ref|ZP_04936873.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192]
 gi|296386953|ref|ZP_06876452.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAb1]
 gi|313111919|ref|ZP_07797709.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016]
 gi|115589405|gb|ABJ15420.1| RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126196929|gb|EAZ60992.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192]
 gi|310884211|gb|EFQ42805.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016]
          Length = 458

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 142/331 (42%), Gaps = 56/331 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I Q   GSGKT    +A+ + +     G QA+++ P   LA Q  + I++  +    I V
Sbjct: 45  IAQAKTGSGKTAAFGLALLSPLNPRYFGCQALVLCPTRELADQVAKEIRRLARAADNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G +P   +  +LE   HG AH+++GT    Q+ ++   L+L     +++DE  R  
Sbjct: 105 LTLCGGVPYGPQVASLE---HG-AHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRML 160

Query: 406 -FGV------------QQRLKLTQKATAP---HVLLMTATPIPRTLVLTSL-GDIDISKI 448
             G             ++R  L   AT P     L  T    PR + + SL  D  I + 
Sbjct: 161 DMGFYDSIAEIIGQLPERRQTLLFSATYPDGIEKLAKTFMRDPRQVKVESLHADSQIEQR 220

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             +          I P  R+D V+  L+    +   A+    Q  ++ +       E  +
Sbjct: 221 FFE----------IDPKQRMDAVVRLLQHFRPQSCVAFC---QTRQQCQ-------ELAD 260

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +L     S++A +HG +   +++ V+  F N +C +L+AT V   G+D+     +I  N 
Sbjct: 261 ALKAQRISALA-LHGDLEQRERDQVLTVFANRSCNVLVATDVAARGLDIAALETVI--NV 317

Query: 569 EHFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
           E     ++H  R GR GR  E    + L  P
Sbjct: 318 ELARDPEVHIHRIGRSGRAGEKGLALSLVAP 348


>gi|325293235|ref|YP_004279099.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
 gi|325061088|gb|ADY64779.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
          Length = 533

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 149/353 (42%), Gaps = 47/353 (13%)

Query: 261 IAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++QK+L  I      +PT  Q  AI   L+    K  +  I Q   G+GKT   ++ M  
Sbjct: 38  LSQKVLSAIADAGYTTPTPIQAGAIPPALE----KRDICGIAQ--TGTGKTASFVLPMLT 91

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q  E  +KY +N ++ V ++ G +    + + LER
Sbjct: 92  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLER 151

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-L 424
                A ++I T     D  +  KL++     +++DE  R        +      P +  
Sbjct: 152 ----GADVLICTPGRLLDHCERGKLLMTGVEILVIDEADR--------MLDMGFIPDIER 199

Query: 425 LMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           +    P  R TL  ++    +I K+ ++         V  P +    V +R+    ++  
Sbjct: 200 IAKMIPFTRQTLFFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVASHNKDY 259

Query: 484 KAYWICPQIEEKKESNFRS----------VVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           +   +   +   +E+  ++          V + F SL  H   S+  +HG M    + ++
Sbjct: 260 EKRAVLRDLVRAEEAELKNAIIFCNRKKDVADLFRSLDRH-GFSVGALHGDMDQRSRTTM 318

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           + +F++G   LL+A+ V   G+D+ D S +   +        +H++ GR GR 
Sbjct: 319 LQNFRDGQLTLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRA 370


>gi|163815238|ref|ZP_02206615.1| hypothetical protein COPEUT_01398 [Coprococcus eutactus ATCC 27759]
 gi|158449433|gb|EDP26428.1| hypothetical protein COPEUT_01398 [Coprococcus eutactus ATCC 27759]
          Length = 754

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 17/200 (8%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q S I +   D+ +      +L G  GSGKT V +  +   +E G QA+++ P   L   
Sbjct: 214 QMSIINEFQDDVDKDVHRTYLLHGVTGSGKTEVYVQCIRRVIEQGKQAIVLIPEIALT-- 271

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKL 395
            Y+ IK +T+     V ++   +    R    ER   G   ++IG   ALF     + +L
Sbjct: 272 -YQTIKYFTRYFGERVTVVNSRLSSGERYDQFERAKKGDVDVVIGPRSALF---TPFERL 327

Query: 396 ILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            L+I+DE+H          ++  ++      +     V+L +ATP   +      G+  +
Sbjct: 328 GLIIIDEEHESSYKSDNPPKYHARETAIERARLEGASVILGSATPSVESYKKAMSGEFRL 387

Query: 446 SKITEKPAGRKPIKTVIIPI 465
             + E+ + RK   T I+ +
Sbjct: 388 WTMDERVSDRKMADTSIVDL 407


>gi|152986227|ref|YP_001345953.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PA7]
 gi|150961385|gb|ABR83410.1| DEAD/DEAH box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Pseudomonas aeruginosa PA7]
          Length = 458

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 144/330 (43%), Gaps = 54/330 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I Q   GSGKT    + + A +     G QA+++ P   LA Q  + I++  +    I V
Sbjct: 45  IAQAKTGSGKTAAFGLGLLAPLNPRYFGCQALVLCPTRELADQVAKEIRRLARAADNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P   +  +LE   HG AH+++GT    Q+ ++   L+L     +++DE  R  
Sbjct: 105 LTLCGGVPYGPQVASLE---HG-AHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRML 160

Query: 407 --GV------------QQRLKLTQKATAPHVLLMTATPI---PRTLVLTSLGDIDISKIT 449
             G             ++R  L   AT P  +   A      P+ + + SL   D S+I 
Sbjct: 161 DMGFYDSIAEIIGQLPERRQTLLFSATYPDGIEKLAKAFMRDPQQVKVESL-HTD-SQIE 218

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           ++          I P  R+D V+  L+    +   A+    Q  ++ +       E  ++
Sbjct: 219 QR-------FFEIDPKQRMDAVVRLLQHFRPQSCVAFC---QTRQQCQ-------ELADA 261

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L  H  S++A+ HG +   +++ V+  F N +C +L+AT V   G+D+     +I  N E
Sbjct: 262 LKAHRISALAL-HGDLEQRERDQVLTVFANRSCTVLVATDVAARGLDIAALETVI--NVE 318

Query: 570 HFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
                ++H  R GR GR  E    + L  P
Sbjct: 319 LARDPEVHIHRIGRSGRAGEKGLALSLVAP 348


>gi|114328724|ref|YP_745881.1| primosome assembly protein PriA [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316898|gb|ABI62958.1| primosomal protein N' [Granulibacter bethesdensis CGDNIH1]
          Length = 747

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 41/207 (19%)

Query: 261 IAQKILRNIPF-SPTK--SQESA--IKDILQDMSQKNRMLR-----------ILQGDVGS 304
           ++Q +L  +P   P++    ESA  + D+  D ++    LR           +L+G  GS
Sbjct: 187 VSQGLLEQVPMVRPSRYGVPESAFTVPDLSADQAEVAESLREAVRAHTFSVTLLEGVTGS 246

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT V L A+A A+  G Q +I+ P   L+ Q   ++ ++ +   +   I   ++    R
Sbjct: 247 GKTEVYLEAIAEALTCGRQTLILLPEIALSTQ---WLDRFRRRFGVEPAIWHSDLSSLTR 303

Query: 365 RKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQ------------- 410
           R+    +  G+A +++G   ALF   + +  L LV+VDE+H    +Q             
Sbjct: 304 RQCWRAVTSGEAKVVVGARSALF---LPFSNLGLVVVDEEHETAFKQEDGIIYHARDMAV 360

Query: 411 -RLKLTQKATAPHVLLMTATPIPRTLV 436
            R +  Q A+    LL++ATP   TL 
Sbjct: 361 VRARFEQAAS----LLVSATPSLETLA 383


>gi|47218719|emb|CAG05691.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 727

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 142/333 (42%), Gaps = 49/333 (14%)

Query: 297 ILQGDVGSGKT------LVALIAMAAAVEAGGQA---VIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT      LV  +   +A  A G+A   +++ P   LA Q  +  K   + 
Sbjct: 195 IAQARTGTGKTFSFAIPLVEKLQGDSAAPARGRAPKVLVLTPTRELAIQVAKDFKDIIKK 254

Query: 348 TQIIVEII-TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVD 401
             I+     T  MPQ      +E I +G   I++GT    +D +Q +KL L     V++D
Sbjct: 255 LSIVCFYGGTSYMPQ------IEAIRNG-IDILVGTPGRIKDHLQNHKLDLSKLKHVVLD 307

Query: 402 EQHRF-------GVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           E  +         V++ L L+ K  A   P  LL +AT  P           D++K   +
Sbjct: 308 EVDQMLDMGFAEQVEEILALSYKKDADTNPQTLLFSATCPPWVY--------DVAKKYMR 359

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ER 506
           P+  K +  +     +    +E L +     ++A  I   I     S+ R++V     + 
Sbjct: 360 PSC-KHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVIRVYSGSHGRAIVFCETKKE 418

Query: 507 FN--SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            N  +L+     +   +HG +    +E+ +  F+ G+ ++L+AT V   G+D+ +  +++
Sbjct: 419 ANELALNASIKQNAQSLHGDIPQKQRETTLKGFRKGSFEVLVATNVAARGLDIPEVDLVV 478

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             +      + +H+  GR GR      CI  Y 
Sbjct: 479 QCSPPKDVESYIHR-SGRTGRAGRTGICICFYQ 510


>gi|126290158|ref|XP_001370541.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Monodelphis domestica]
          Length = 1175

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 134/311 (43%), Gaps = 43/311 (13%)

Query: 302 VGSGKTLVALIAM------AAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+  L+ M        A+E G    AVIM P   LA Q  +  KK+++   + V 
Sbjct: 562 TGSGKTIAFLLPMFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVV 621

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G    + +   L+R     A II+ T     D +           ++  V++DE  R
Sbjct: 622 CVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADR 677

Query: 406 F---GVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
               G + Q +++          +M +   PR   + +L    +SK         PI+  
Sbjct: 678 MFDMGFEPQVMRIVDNVRPDRQTVMFSATFPR--AMEALARRILSK---------PIEVQ 726

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS 517
           +   + +   +E+  +V+ E  K   +   +   +ES     F    E  + L +    +
Sbjct: 727 VGGRSVVCSDVEQQVIVIEEENKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRA 786

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +    
Sbjct: 787 SYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYED 846

Query: 575 QLHQLRGRVGR 585
            +H+  GR GR
Sbjct: 847 YVHRA-GRTGR 856


>gi|194246516|ref|YP_002004155.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
 gi|193806873|emb|CAP18302.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
          Length = 531

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 144/342 (42%), Gaps = 36/342 (10%)

Query: 262 AQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
            QK L+ + F  PT  Q   I ++++          I Q   G+GKT    I +   ++ 
Sbjct: 14  TQKALKELNFLKPTAIQNLVISEMIEGYD------IIGQAQTGTGKTFAFGIPIIEKIDL 67

Query: 321 G---GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                Q++I+ P   LA Q ++  KK  +   +I + +I G      + K LE     + 
Sbjct: 68  NIKQTQSLILCPTRELALQVFQEFKKLIKFYVEIKIAVIYGGESYIKQFKVLE----TKP 123

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLM 426
           HIII T     D ++  K        L L   DE    G Q+ L+  L +       +L 
Sbjct: 124 HIIIATPGRVIDLLERKKIDFSGLKILTLDEADEMLNMGFQEALETILQKIPKKRQTVLF 183

Query: 427 TAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +AT  P  + +      +  + K+ +K      ++     +   D++   ++++  E   
Sbjct: 184 SATLPPTIQKIANKYQNNPKVLKVYQKNIAVSSVQQFYFLVKEFDKLKLLVRLLDLENPN 243

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +  I         +N +  V+  N+  +    S+  +HG +    ++ VM++F+N   K+
Sbjct: 244 SVIIF--------ANTKKDVDEINAYLQENNFSVDFLHGDLKQNQRQQVMNNFRNQKIKI 295

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           LIAT V   GID+   +++I  +        +H++ GR GR 
Sbjct: 296 LIATDVAARGIDISSITMVINYDLSRQNEIYVHRI-GRTGRA 336


>gi|54298857|ref|YP_125226.1| primosomal protein N' (replication factor Y) [Legionella
           pneumophila str. Paris]
 gi|53752642|emb|CAH14077.1| Primosomal protein N' (replication factor Y) [Legionella
           pneumophila str. Paris]
          Length = 725

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 111/242 (45%), Gaps = 27/242 (11%)

Query: 235 AGQIALLLMRK--QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
             QIA LL  +     +++ +P  +  K++       P +    Q  A+  IL+ +    
Sbjct: 162 GNQIATLLACQAINLSQQVTLPTKIPEKLSP------PLTLNPEQAVAVASILEHIHHYQ 215

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQII 351
             L  LQG  GSGKT V L  +A  +E G Q +++ P IG+  Q     + ++T      
Sbjct: 216 CFL--LQGVTGSGKTEVYLHVIAKILEQGKQVLVLVPEIGLTPQ----LLSRFTARFNHP 269

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           + ++  N+ ++ R+ A +     +  ++IGT +     +    L L+I+DE+H   ++Q 
Sbjct: 270 ITVLHSNLNESERQIAWQLAKENKVKMVIGTRSAVFTPLP--NLGLIIIDEEHDSSLKQM 327

Query: 412 --LKLTQKATA---PH-----VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
             ++ + + TA    H     ++L TATP   T+        ++ ++T K A   P+   
Sbjct: 328 EGVRYSARDTALMRAHLANIPIILGTATPSLETIHNCKQKKYNLLRLTHKAASTTPLHYQ 387

Query: 462 II 463
           +I
Sbjct: 388 LI 389


>gi|88706512|ref|ZP_01104216.1| ATP-dependent RNA helicase DbpA [Congregibacter litoralis KT71]
 gi|88699224|gb|EAQ96339.1| ATP-dependent RNA helicase DbpA [Congregibacter litoralis KT71]
          Length = 462

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 133/308 (43%), Gaps = 28/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQ-HYEFIKKYTQNTQIIV 352
           I +   GSGKT    I +   +     G QA+++ P   LA+Q   E  +  ++   I +
Sbjct: 45  IARARTGSGKTAAFGIGLLQTINPRFFGVQALVLCPTRELAEQVSGELRRLASRMANIKL 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFG 407
             + G  P   +  +LE   HG AHI++GT    QD     +++   L ++++DE  R  
Sbjct: 105 VTLCGGKPFGPQVGSLE---HG-AHIVVGTPGRIQDHLGRDTLKLDGLKVLVLDEADRM- 159

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++    +I K++     +  + TV   + 
Sbjct: 160 ------LDMGFADSMEAIVAKTPRSRQTLLFSATYPENIRKMSASIQRQPSMVTVDEEVA 213

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------RSVVERFNSLHEHFTSSIAI 520
             +EVIE+L   + + ++   +    E    +N       +   +   S+   +      
Sbjct: 214 HKEEVIEQLFYEVQKHERHTTLLALFEHYTPANAVVFCNTKKQCDEVASVLRDYDIEARA 273

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG +   +++ V+  F N +C +L+AT V   G+D+   +++I           +H++ 
Sbjct: 274 IHGDLDQRERDQVLVQFANNSCPVLVATDVAARGLDIKSLAMVINYELPRDPEVYVHRI- 332

Query: 581 GRVGRGEE 588
           GR GR  E
Sbjct: 333 GRTGRAGE 340


>gi|15595652|ref|NP_249146.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
 gi|107099439|ref|ZP_01363357.1| hypothetical protein PaerPA_01000451 [Pseudomonas aeruginosa PACS2]
 gi|254237315|ref|ZP_04930638.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719]
 gi|9946315|gb|AAG03844.1|AE004483_2 RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
 gi|126169246|gb|EAZ54757.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719]
          Length = 458

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 142/331 (42%), Gaps = 56/331 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I Q   GSGKT    +A+ + +     G QA+++ P   LA Q  + I++  +    I V
Sbjct: 45  IAQAKTGSGKTAAFGLALLSPLNPRYFGCQALVLCPTRELADQVAKEIRRLARAADNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G +P   +  +LE   HG AH+++GT    Q+ ++   L+L     +++DE  R  
Sbjct: 105 LTLCGGVPYGPQVASLE---HG-AHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRML 160

Query: 406 -FGV------------QQRLKLTQKATAP---HVLLMTATPIPRTLVLTSL-GDIDISKI 448
             G             ++R  L   AT P     L  T    PR + + SL  D  I + 
Sbjct: 161 DMGFYDSIAEIIGQLPERRQTLLFSATYPDGIEKLAKTFMRDPRQVRVESLHADSQIEQR 220

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             +          I P  R+D V+  L+    +   A+    Q  ++ +       E  +
Sbjct: 221 FFE----------IDPKQRMDAVVRLLQHFRPQSCVAFC---QTRQQCQ-------ELAD 260

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +L     S++A +HG +   +++ V+  F N +C +L+AT V   G+D+     +I  N 
Sbjct: 261 ALKAQRISALA-LHGDLEQRERDQVLTVFANRSCNVLVATDVAARGLDIAALETVI--NV 317

Query: 569 EHFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
           E     ++H  R GR GR  E    + L  P
Sbjct: 318 ELARDPEVHIHRIGRSGRAGEKGLALSLVAP 348


>gi|195146542|ref|XP_002014243.1| GL19047 [Drosophila persimilis]
 gi|194106196|gb|EDW28239.1| GL19047 [Drosophila persimilis]
          Length = 386

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 122/293 (41%), Gaps = 49/293 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q    +    + T+    
Sbjct: 57  IAQAQSGTGKTATFSIAILQQIDTAVRECQALILAPTRELATQIQRVVMALGECTR---- 112

Query: 354 IITGNMPQAHRRKALE--RIAHGQAHIIIGTHALFQDSI-------QYYKL-ILVIVDEQ 403
                MP        E  RI     H+++GT     D I       Q+ KL +L   DE 
Sbjct: 113 -----MPCIGGTNVREDARILESGCHVVVGTPGRVYDMINRKVLRTQHIKLFVLDEADEM 167

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + +++   K   P   V+L++AT  P  L ++            +   R+P+   
Sbjct: 168 LSRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVS------------RCFMREPVS-- 213

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + + +  +E +K      K+  W    + +  ++          N R  V++     
Sbjct: 214 -ILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEM 272

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                +++ +HG M   D+E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 273 SSHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 325


>gi|302038481|ref|YP_003798803.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
 gi|300606545|emb|CBK42878.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
          Length = 442

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 152/360 (42%), Gaps = 62/360 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM-AAAVEAG--------- 321
           +PT  Q +AI      ++ + R L + Q   GSGKTL  LI +   AV+ G         
Sbjct: 24  APTPIQSAAIP-----LALEGRDL-LAQAKTGSGKTLAFLIPLIERAVKEGWKPAGSARS 77

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+++AP   LA Q    ++KY   + +    + G +P     +AL +       I+IG
Sbjct: 78  PRALVLAPTRELALQIEMELRKYAPPS-VTSLAVYGGVPIERHYRALRQ----PPMIVIG 132

Query: 382 THALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKL--TQKATAPHVLLMT 427
           T     D      L L     V++DE  +         +Q+ L+L  +Q+ T    +L +
Sbjct: 133 TPGRLLDVAGTRHLDLRGIEYVVMDEADQMLDRGFLRDIQRILQLLPSQRQT----MLFS 188

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP-INRIDEVIERLKVVLSEGKKAY 486
           AT  P  L L        S +      + P +T + P +N    +     VV SE  +  
Sbjct: 189 ATFSPEILTLAE------SML------KNPARTAVDPGVNTPTTITHAYYVVPSESSRVQ 236

Query: 487 WICPQIEEKKESNFRSVV--------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            I   + +  ES  +S+V        +R  +      +S+  I G  S   +E  + +F+
Sbjct: 237 LIH-TLLQSPESGDQSMVFCDQKYKVKRLAARLGGEPASVGAITGNHSQAQRERTLTAFR 295

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G  + L+AT V   G+DV   S +I         + +H+  GR GR E   + +L+  P
Sbjct: 296 SGRLRTLVATDVAARGLDVPSVSQVIHYELPGNPTSYVHRT-GRTGRAERSGATLLILSP 354


>gi|15900655|ref|NP_345259.1| DEAD-box ATP dependent DNA helicase [Streptococcus pneumoniae
           TIGR4]
 gi|111658348|ref|ZP_01409036.1| hypothetical protein SpneT_02000488 [Streptococcus pneumoniae
           TIGR4]
 gi|149025531|ref|ZP_01836464.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|168484834|ref|ZP_02709779.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC1873-00]
 gi|225854268|ref|YP_002735780.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae JJA]
 gi|303261432|ref|ZP_07347380.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|303268729|ref|ZP_07354519.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS458]
 gi|307127689|ref|YP_003879720.1| ATP-dependent RNA helicase [Streptococcus pneumoniae 670-6B]
 gi|14972235|gb|AAK74899.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae TIGR4]
 gi|147929403|gb|EDK80400.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|172041993|gb|EDT50039.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC1873-00]
 gi|225722536|gb|ACO18389.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae JJA]
 gi|302637566|gb|EFL68053.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|302641789|gb|EFL72146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS458]
 gi|306484751|gb|ADM91620.1| ATP-dependent RNA helicase [Streptococcus pneumoniae 670-6B]
 gi|332077176|gb|EGI87638.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17545]
          Length = 447

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 154/352 (43%), Gaps = 38/352 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + F+ PT+ Q+  I  +L       R L + +   GSGKT   L+ +   ++     
Sbjct: 16  LKELKFTTPTEVQDKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDEASDS 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHII 379
            QAVI AP   LA Q Y+  ++ + ++ + V ++   G   +A   + +E++A  Q HI+
Sbjct: 70  VQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKA---RQIEKLASNQPHIV 126

Query: 380 IGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTAT 429
           IGT     D ++      +K    +VDE         L+   K           ++ +AT
Sbjct: 127 IGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSAT 186

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            IP+ L         + K    P   K IKT  +  + ID  +   K    +  + Y + 
Sbjct: 187 -IPQKLQPF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-HDKNAQIYQLT 237

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             ++      F +   R + LH + T+    +A IHG ++  +++ +M+  +N   + ++
Sbjct: 238 QLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 298 ATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|322374632|ref|ZP_08049146.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C300]
 gi|321280132|gb|EFX57171.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C300]
          Length = 447

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 149/345 (43%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +PT+ QE  I  +L       R L + +   GSGKT   L+ +   ++      QAVI A
Sbjct: 23  TPTEVQEKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDETSDSVQAVITA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           P   LA Q Y+  ++   ++ + V ++   G   +A   + +E++A  Q HI+IGT    
Sbjct: 77  PSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKA---RQIEKLASNQPHIVIGTPGRI 133

Query: 387 QDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTATPIPRTLV 436
            D ++      +K    ++DE         L+   K           ++ +AT IP+ L 
Sbjct: 134 YDLVKSGDLAIHKAKTFVIDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSAT-IPQKLQ 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   + K    P   K IKT  +  + ID  +   K    +  + Y +   ++   
Sbjct: 193 PF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-RDKNAQIYQLTQLMQPYL 244

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +   R + LH + T+    +A IHG ++  +++ +M+  KN   + ++AT +   
Sbjct: 245 AMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIVATDLAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 305 GIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|213967864|ref|ZP_03396010.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           T1]
 gi|213927207|gb|EEB60756.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           T1]
          Length = 473

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 101/428 (23%), Positives = 186/428 (43%), Gaps = 57/428 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  ++   I V
Sbjct: 59  IAQAKTGSGKTAAFGIGLLNPINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKV 118

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 119 LTLCGGVSFGPQIGSLE---HG-AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRM- 173

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++   + I +++ K   R P +TV +   
Sbjct: 174 ------LDMGFYDSIADIIEQTPQRRQTLLFSATYPVGIKQLSSKFM-RDP-QTVKVEAL 225

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAI 520
             D  IE++   +S  ++   +   +   + ++   F    ++   + +H T+   S   
Sbjct: 226 HADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVG 285

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++ V+  F N +  +L+AT V   G+D +DA  +++ N E    +++H  R
Sbjct: 286 LHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVL-NVELARDSEIHIHR 343

Query: 581 -GRVGRGEEISSCILLYHP---------------PLSKNSYTRLSVLKNTE-----DGFL 619
            GR GR  E    + L  P               PL+   Y  LS+ +  +         
Sbjct: 344 VGRTGRAGETGIAVSLVAPSESQRARAIEELQKAPLNWQQYDSLSIKEGGKLLPAMTTLC 403

Query: 620 IAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAKHILTQDPDLTS 675
           I      + + G+ILG    ++G+    + +  + D  + + + R  AK  L +  +   
Sbjct: 404 IGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALERLNN-GK 462

Query: 676 VRGQSIRI 683
           ++G+S+R+
Sbjct: 463 IKGKSLRV 470


>gi|110634124|ref|YP_674332.1| DEAD/DEAH box helicase-like [Mesorhizobium sp. BNC1]
 gi|110285108|gb|ABG63167.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1]
          Length = 477

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 145/344 (42%), Gaps = 59/344 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI   LQ       +L I Q   G+GKT   ++ M   +E G       + +I
Sbjct: 24  PTPIQAGAIPHALQGKD----VLGIAQ--TGTGKTASFVLPMLTRLERGRARARMPRTLI 77

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   KY +N ++ + ++ G +    + K LER     A ++I T    
Sbjct: 78  LEPTRELAAQVEENFVKYGKNHRLNIALLIGGVSFDEQEKKLER----GADVLIATPGRL 133

Query: 387 QDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLTS 439
            D  +  KL+L     +++DE  R        +      P +  +    P  R TL  ++
Sbjct: 134 LDHHERGKLLLTGVEILVIDEADR--------MLDMGFIPDIERICKLIPFTRQTLFFSA 185

Query: 440 LGDIDISKITE------------KPAG------RKPIKTVIIPINRIDEVIERLKVVLSE 481
               +I+K+TE            KPA       ++ +K+   P  + +++ + ++    E
Sbjct: 186 TMPPEITKLTEQFLQGPVRVEVSKPASTAVNITQRLVKSGSKPWAKREKLRDLIRAEGDE 245

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            K A   C +  E        V   F SL  H   + A+ HG M    +  ++++F+ G 
Sbjct: 246 LKNAIIFCNRKTE--------VATLFRSLVRHEFDAGAL-HGDMDQRARMMMLENFRKGK 296

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            KLL+A+ V   G+D+ D S +   +        +H++ GR GR
Sbjct: 297 LKLLVASDVAARGLDIPDVSHVFNFDVPTHSEDYVHRI-GRTGR 339


>gi|307203141|gb|EFN82321.1| ATP-dependent RNA helicase p62 [Harpegnathos saltator]
          Length = 410

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 139/351 (39%), Gaps = 63/351 (17%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
           G  GSGKTL  ++     + A        G  A+I+AP   LAQQ       +   + + 
Sbjct: 34  GQTGSGKTLGYILPAIVHINAQERLNHGDGPIALILAPTRELAQQIQSVTTDFGSLSYVR 93

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR- 405
              I G  P+  + + L R       I I T       L Q +    +   +++DE  R 
Sbjct: 94  STCIFGGAPRGGQARDLRR----GVEICIATPGRLIDFLEQGTTNLRRCTYLVLDEADRM 149

Query: 406 ----FGVQQRLKLTQKATAPHVLLMTATPIPR-------------------TLVLTSLGD 442
               F  Q R  + Q      VL+ +AT  P+                   +L L +  D
Sbjct: 150 LDMGFEPQIRKIIEQIRPDRQVLMWSAT-WPKEVRTLAKEYLKNYVQLNIGSLTLAANHD 208

Query: 443 I-DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           I  I ++ E+      +KT++  I+  +E   ++ ++  E KK          K ES  R
Sbjct: 209 ILQIVEVCEEYEKEAKLKTLLENIHDANEDSSKI-IIFVETKK----------KVESITR 257

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           S+          F      IHG  S  +++ V+  F+N    +L+AT V   G+DV D  
Sbjct: 258 SI--------RRFGWPAVCIHGDKSQHERDFVLREFRNKKSSILVATDVAARGLDVDDVK 309

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +I  +        +H++ GR GR     +   L+ P  ++ +   ++VLK
Sbjct: 310 YVINFDYPSSSEDYIHRI-GRTGRSGNTGTSYALFTPQNARQARDLINVLK 359


>gi|225856436|ref|YP_002737947.1| ATP-dependent RNA helicase [Streptococcus pneumoniae P1031]
 gi|225725948|gb|ACO21800.1| ATP-dependent RNA helicase [Streptococcus pneumoniae P1031]
          Length = 447

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 154/352 (43%), Gaps = 38/352 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + F+ PT+ Q+  I  +L       R L + +   GSGKT   L+ +   ++     
Sbjct: 16  LKELKFTTPTEVQDKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDEASDS 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHII 379
            QAVI AP   LA Q Y+  ++ + ++ + V ++   G   +A   + +E++A  Q HI+
Sbjct: 70  VQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKA---RQIEKLASNQPHIV 126

Query: 380 IGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTAT 429
           IGT     D ++      +K    +VDE         L+   K           ++ +AT
Sbjct: 127 IGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIADSLPKDLQFMVFSAT 186

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            IP+ L         + K    P   K IKT  +  + ID  +   K    +  + Y + 
Sbjct: 187 -IPQKLQPF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-HDKNAQIYQLT 237

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             ++      F +   R + LH + T+    +A IHG ++  +++ +M+  +N   + ++
Sbjct: 238 QSMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 298 ATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|186686894|ref|YP_001870087.1| ATP-dependent DNA helicase RecQ [Nostoc punctiforme PCC 73102]
 gi|186469246|gb|ACC85046.1| ATP-dependent DNA helicase, RecQ family [Nostoc punctiforme PCC
           73102]
          Length = 1675

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 143/353 (40%), Gaps = 49/353 (13%)

Query: 302 VGSGKTLV-ALIAMAAAVEAGGQAVIMAPI-GILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            G GK+L   L A           ++++P+  ++A Q    +    Q        I GN+
Sbjct: 294 TGGGKSLCYQLPAFMFHERHKALTIVISPLQALMADQ----VADLEQAGFFFSTFINGNL 349

Query: 360 PQAHRRKALERIAHGQAHII-IGTHALFQDSI----QYYKLILVIVDEQH---RFGVQ-- 409
             A RR+ LE +  G   ++ I    L   SI    +    +L ++DE H   ++G    
Sbjct: 350 SAAERRQRLEELRFGSKGLLYISPEQLRSMSIRALLEQRPPVLWVIDEAHCVSQWGHDFR 409

Query: 410 ----------QRLKLTQKATAPHVLLMTATPIPRTLV----LTSLGDIDISKITEKPAGR 455
                     Q L   ++   P + LMTAT   + +     L +   ++I++  +    R
Sbjct: 410 PDYRYIPKFIQELYQERQLAMPLLALMTATATVKVVEDIKKLFAQYQLNINRTIDGAITR 469

Query: 456 KPIKTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           + +   +IP+  N+   ++E++K  +  G         +      N   + E  N  H  
Sbjct: 470 ENLTFQVIPVAGNKEQVLLEQVKEAIKLGGSTL-----VYTTTRKNAEKLAELLNQSH-- 522

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                   HG+++   K+ V+  FK+G   ++ AT    +GI+  D    +I ++    L
Sbjct: 523 --IKAKYYHGKLAKEKKQEVLQEFKSGKLNVITATCAFGMGINRKDVR-AVIHHSMSANL 579

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
               Q  GR GR  E + C LL+ P    ++  RL  L        ++E+DLK
Sbjct: 580 EGYVQEAGRAGRDGEPAVCTLLFDPK-DADTVFRLQSLNQ------LSEQDLK 625


>gi|302798398|ref|XP_002980959.1| hypothetical protein SELMODRAFT_178562 [Selaginella moellendorffii]
 gi|302815225|ref|XP_002989294.1| hypothetical protein SELMODRAFT_129703 [Selaginella moellendorffii]
 gi|300142872|gb|EFJ09568.1| hypothetical protein SELMODRAFT_129703 [Selaginella moellendorffii]
 gi|300151498|gb|EFJ18144.1| hypothetical protein SELMODRAFT_178562 [Selaginella moellendorffii]
          Length = 539

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 139/339 (41%), Gaps = 52/339 (15%)

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP   L QQ Y  IKK+T+   +    + G    A +   L+R     A I++ T    
Sbjct: 1   MAPTRELVQQIYSDIKKFTRVIGLTCVPVYGGSGVAQQISELKR----GAEIVVCTPGRM 56

Query: 387 QDSI--------QYYKLILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPR 433
            D +           ++  +++DE  R    G + ++    + T P    +L +AT  PR
Sbjct: 57  IDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSAT-FPR 115

Query: 434 TLVLTSLGDIDISKITEKP-----AGRKPIKTVIIPI-------NRIDEVIERLKVVLSE 481
            + L +       K+ +KP      GR  +   I          +R   ++E L     +
Sbjct: 116 QVELLA------RKVLDKPVEIQVGGRSVVNKDITQTVEVRPEEDRFLRLLELLGEWYEK 169

Query: 482 GKKAYWICPQIEEKKESNFRSVVER-FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           GK   ++  Q  EK +S FR +++  +  L          +HG     D+ES +  FK+ 
Sbjct: 170 GKVLVFVHSQ--EKCDSLFRDLLKAGYPCLS---------LHGAKDQTDRESTLSDFKSN 218

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
            C LL+AT+V   G+DV +  +++  +  +     +H++ GR GR       +    P  
Sbjct: 219 VCNLLVATSVAARGLDVKELELVVNYDVPNHYEDYVHRV-GRTGRAGRKGCAVTFIAPDE 277

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
            + +      L+ +E       EDLK   +G I  + Q 
Sbjct: 278 DRYAPDLAKALELSEQPI---PEDLKSLADGFIAKVNQG 313


>gi|330993162|ref|ZP_08317099.1| Primosomal protein N' [Gluconacetobacter sp. SXCC-1]
 gi|329759713|gb|EGG76220.1| Primosomal protein N' [Gluconacetobacter sp. SXCC-1]
          Length = 754

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 21/147 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT + + A+AA V AG QA+++ P I + AQ    F +++     +    +
Sbjct: 246 LLEGVTGSGKTEIYMEAIAACVAAGRQALVLLPEIALSAQWTGRFARRFGAEPALWHSDL 305

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              +    RR     +A G A +++G   ALF   + + +L L+IVDE+H    +Q   +
Sbjct: 306 GARL----RRVTWRAVADGTARVVVGARSALF---LPFDQLGLIIVDEEHETAFKQEDGV 358

Query: 415 TQKA-----------TAPHVLLMTATP 430
           T  A            AP ++L++ATP
Sbjct: 359 TYHARDMAVVRARMSQAP-IVLVSATP 384


>gi|187935607|ref|YP_001886536.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723760|gb|ACD24981.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum B str.
           Eklund 17B]
          Length = 812

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 149/344 (43%), Gaps = 48/344 (13%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           K QE+ I +I+      N +L I+    G GK++   +    A+   G  ++++P+  L 
Sbjct: 20  KGQENIISNIIDG----NDVLAIMP--TGGGKSICYQVP---ALIFEGLTIVISPLISLM 70

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII-IGTHAL----FQDS 389
           +   + +K    N     E I  ++  A   + ++ I +GQ  I+ +    L    F + 
Sbjct: 71  KDQVDALKDMGING----EFINSSISSAEENRVIDNIRNGQCKILYVAPERLESLNFLNV 126

Query: 390 IQYYKLILVIVDEQH---RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI--D 444
           I    +  + +DE H   ++G   R   T+   +  + L+   PI      T+  ++  D
Sbjct: 127 ISECSVSQIAIDEAHCISQWGHDFRTSYTK--VSGFIKLLKTRPIITAFTATASEEVRED 184

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FR 501
           I ++ +     KP K  I   +R + +I     ++  G K  ++   I   KES+   + 
Sbjct: 185 IIRLLDL---NKP-KIFITGFDRENLLIN----IIKSGDKKSYLHNYINNNKESSGVIYA 236

Query: 502 SVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           +  +  + +HE  +    SI   H  +S+ D++   + F      +++AT    +GID  
Sbjct: 237 ATRKEVDKIHEELSYNGFSITKYHAGLSENDRKQNQEDFIYDRSNIMVATNAFGMGIDKP 296

Query: 559 DASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHP 598
           +   ++     H+ + +     +Q  GR GR  E S CILL+ P
Sbjct: 297 NIRFVV-----HYNMPKNIEGYYQEIGRAGRDGEKSECILLFSP 335


>gi|223938508|ref|ZP_03630400.1| primosomal protein N' [bacterium Ellin514]
 gi|223892770|gb|EEF59239.1| primosomal protein N' [bacterium Ellin514]
          Length = 773

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 24/224 (10%)

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFI 341
           D+ Q   +    + +L G  GSGKT V L A+A A+E G  A+++ P I +  Q    F 
Sbjct: 239 DVPQTEPKNASSVFLLHGVTGSGKTEVYLQALAHALEQGKGAIVLVPEISLTPQTVERFK 298

Query: 342 KKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            +++    Q +V ++  ++    R     +I  G+A I+IG  +     +    L L+IV
Sbjct: 299 ARFSSGPLQTLVAVLHSHLSAGERHDEWHKIRQGRARIVIGARSAIFAPVD--PLGLIIV 356

Query: 401 DEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           DE+H          R+  +    +  +     V+L +ATP   +    S G   + ++ E
Sbjct: 357 DEEHEHTYKQEESPRYHARDVAIVRGRMEGATVVLGSATPSMESFYNCSRGKYILLEMLE 416

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +   +K      +P+ R+ +    ++  + +GK      PQ++E
Sbjct: 417 RVDAKK------MPLVRVVD----MRQAMRKGKSIPIYSPQLKE 450


>gi|91977685|ref|YP_570344.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
 gi|91684141|gb|ABE40443.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
          Length = 691

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 138/329 (41%), Gaps = 46/329 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAA---------AVEAGGQAVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A          +  A   A+I+AP   LA Q H E    Y  
Sbjct: 40  LVSAQTGSGKTVAYGLAIARDLLGDSERFSSAAAPLALIVAPTRELALQVHRELGWVYGY 99

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILV 398
               +V  + G  P+  +R+    +A G AHI++GT     D ++  +L        +L 
Sbjct: 100 AGARVVSCVGGMDPRREQRE----LAEG-AHIVVGTPGRLCDHLRRNRLDVSQLKAVVLD 154

Query: 399 IVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPR---TLVLTSLGDIDISKITEKPA 453
             DE    G ++ ++   K T      LL +AT +PR    L  T   D    ++  +  
Sbjct: 155 EADEMLDLGFREDMEFILKTTPATRRTLLFSAT-LPRGIIALAKTYQHDAFRIEVEGREG 213

Query: 454 GRKPIK---TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           G   I+     I P +    V+  L+ V  E   A   C         N R+ V    + 
Sbjct: 214 GHADIEYRAMRIAPSDVEHAVVNTLRFV--ESPSAIVFC---------NTRNAVNHLQTS 262

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 S+  + G ++  ++   ++S ++G  ++ +AT V   GID+ +  ++I  +A+ 
Sbjct: 263 LLERGFSVVALSGELTQNERTQALNSLRDGRARVCVATDVAARGIDLPNLGLVI--HADL 320

Query: 571 FGLAQLHQLR-GRVGRGEEISSCILLYHP 598
               ++ Q R GR GR  +    +LL  P
Sbjct: 321 PNDPEVMQHRSGRTGRAGKKGVSVLLVPP 349


>gi|295094722|emb|CBK83813.1| replication restart DNA helicase PriA [Coprococcus sp. ART55/1]
          Length = 752

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 17/203 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
              Q+  + D + D  Q      +L G  GSGKT V +  +   V AG QA+++ P   L
Sbjct: 211 NSDQQRIVDDFVSDADQGIHRTYLLHGVTGSGKTEVYVRCIREVVRAGRQAIVLIPEIAL 270

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
             Q   +  +Y  +    V ++   +    +    ER   G   ++IG   ALF     +
Sbjct: 271 TYQTLTYFSRYFGDR---VTMVNSKLSSGEKYDQFERARKGDVDVVIGPRSALF---TPF 324

Query: 393 YKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            KL L+I+DE+H          ++  ++      +     V+L +ATP   +      G+
Sbjct: 325 EKLGLIIIDEEHESSYKSDSPPKYHARETAIERARLEGASVILGSATPSVESYKRALAGE 384

Query: 443 IDISKITEKPAGRKPIKTVIIPI 465
             +  +  +  GR   +T I+ +
Sbjct: 385 YRLWTMDSRIEGRAMAETSIVDL 407


>gi|148825377|ref|YP_001290130.1| primosome assembly protein PriA [Haemophilus influenzae PittEE]
 gi|229846429|ref|ZP_04466537.1| primosome assembly protein PriA [Haemophilus influenzae 7P49H1]
 gi|89892378|gb|ABD78968.1| HI0339-like protein [Haemophilus influenzae]
 gi|148715537|gb|ABQ97747.1| primosome assembly protein PriA [Haemophilus influenzae PittEE]
 gi|229810522|gb|EEP46240.1| primosome assembly protein PriA [Haemophilus influenzae 7P49H1]
          Length = 730

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 158/389 (40%), Gaps = 94/389 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +++G Q +++ P IG+  Q  + F  ++     + ++++
Sbjct: 222 LLDGVTGSGKTEIYLQYIEEILKSGKQVLVLVPEIGLTPQTVHRFKARFN----VEIDVL 277

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLK- 413
             N+    R    +R   GQ+ I+IGT  ALF    Q+  L  +I+DE+H    +Q+   
Sbjct: 278 HSNLTDTQRLYVWDRARSGQSAIVIGTRSALF---TQFSNLGAIILDEEHDTSYKQQDSW 334

Query: 414 ----------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                     L QK     VL+ +ATP   ++     G      ++++      ++  +I
Sbjct: 335 RYHARDLATVLAQKLNIA-VLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVI 393

Query: 464 PI------NRIDE-VIERLKVVLSEGKKAY------------------WI--CPQIEEKK 496
            +      N + + ++ER+K  L +G +                    WI  CP  E+  
Sbjct: 394 DLKNQHIQNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPY 453

Query: 497 ESNFRSVVERFN----------------SLH--------EHFTSSIAII--HGRMSDIDK 530
             +    V R +                S H        E    ++  +  H  ++ ID+
Sbjct: 454 TYHQHQNVLRCHHCGAQKTIPRQCGDCGSTHLVTTGLGTEQLEETLKTLFPHYSVARIDR 513

Query: 531 ---------ESVMDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHF 571
                    ES ++  + G  ++LI T ++           V +  VD+++  ++     
Sbjct: 514 DSTARKGKLESYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNVDSALFSLDFRAEE 573

Query: 572 GLAQLH-QLRGRVGRGEEISSCILLYHPP 599
            LAQL+ Q+ GR GR ++    +L  H P
Sbjct: 574 RLAQLYIQVAGRAGRADKQGEVVLQTHYP 602


>gi|311997|emb|CAA48790.1| eukaryotic translation initiation factor 4A (eIF-4A) [Drosophila
           melanogaster]
          Length = 402

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 121/290 (41%), Gaps = 41/290 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q    +    +  ++   
Sbjct: 71  IAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSH 130

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------QYYKL-ILVIVDEQHRF 406
              G      R  A  RI     H+++GT     D I      QY KL +L   DE    
Sbjct: 131 ACIGGT--NVREDA--RILESGCHVVVGTPGRVYDMINRKLRTQYIKLFVLDEADEMLSR 186

Query: 407 GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           G + +++   K   P   V+L++AT  P  L ++            +   R P+    I 
Sbjct: 187 GFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVS------------RCFMRDPVS---IL 231

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEHF 514
           + + +  +E +K      K+  W    + +  ++          N R  V++        
Sbjct: 232 VKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIH 291

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             +++ +HG M   D+E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 292 NFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 341


>gi|39935543|ref|NP_947819.1| ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009]
 gi|192291134|ref|YP_001991739.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39649396|emb|CAE27918.1| possible ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192284883|gb|ACF01264.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 472

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 141/357 (39%), Gaps = 58/357 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           SPT  Q+ AI  +L     +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 23  SPTPIQQQAIPHVLA----RKDVLGIAQ--TGTGKTAAFVLPMLTMLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +   L+L     +I+DE  R        +      P +  +    P  R TL  T
Sbjct: 133 LLDHTERGGLLLTGVEMLIIDEADR--------MLDMGFIPDIERICKLVPFTRQTLFFT 184

Query: 439 SLGDIDISKITE-------KPAGRKPIKTVI------IPINRID----EVIERLKVVLSE 481
           +    +I +ITE       K    KP  T +      +P  R      E + RL    ++
Sbjct: 185 ATMPTEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRRLIRGATD 244

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            K A   C        +  R V     SL  H   S+  +HG M    + + +++F+ G 
Sbjct: 245 LKNAIIFC--------NRKREVALLAKSLQRH-GFSVGALHGDMDQTARTAALEAFRKGD 295

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             +L+A+ V   G+D+ + S +   +  H     +H++ GR GR     + + +  P
Sbjct: 296 LPILVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRI-GRTGRAGRTGTAVTIVAP 351


>gi|322799058|gb|EFZ20513.1| hypothetical protein SINV_09810 [Solenopsis invicta]
          Length = 710

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 145/334 (43%), Gaps = 68/334 (20%)

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           L+   ++ E    A+I++P   L  Q Y   KK++ N+ I VE+I G    +H+     +
Sbjct: 339 LVKTGSSCEP--HAIIISPTRELTSQIYTQFKKFSLNSIIRVEVIYGGTSISHQ---TNK 393

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF------------------- 406
           + +G  H+++ T     D I   K++L      ++DE  R                    
Sbjct: 394 VFNG-CHVLVATPGRLLDFIGRGKVVLSSLRFFVLDEADRMLDMGFLPDIEKILDHETMV 452

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-----DISKITEKPAGRKPIKTV 461
             ++R  L   AT P+ +   A    R  +  ++G +     D+ +I  + +G +P K  
Sbjct: 453 AAEERQMLMFSATFPNDIQELAGRFLRNYLFLAVGIVGGACADVEQIFYQASG-QPDKRK 511

Query: 462 IIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           ++      E+IE+   + S EG   +     + +K+ ++F   +  F S + + T+SI  
Sbjct: 512 LLK-----ELIEKQNQLGSIEGTLVF-----VAQKRHTDF---IAAFLSENNYPTTSI-- 556

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----- 575
            HG     ++E  +  FK G   +L+AT V   G+D+ + S +I     +F L Q     
Sbjct: 557 -HGDRLQREREEALSDFKKGKMSILVATAVAARGLDIKNVSHVI-----NFDLPQTIDEY 610

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +H++ GR GR          + P    NS T L+
Sbjct: 611 VHRI-GRTGRVGNRGKATSFFDP----NSDTALT 639


>gi|313225950|emb|CBY21093.1| unnamed protein product [Oikopleura dioica]
          Length = 485

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 140/349 (40%), Gaps = 62/349 (17%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     + A        G  AVI+AP   LA+Q  E  +++ +   +   
Sbjct: 101 TGSGKTLAFVLPSIIHIMAQPDLRPGDGPVAVILAPTRELAKQVQEVAEQFGKPCGVNTV 160

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF-- 406
            + G   +  +  ALER     AHI++       D IQ      ++   +I+DE  R   
Sbjct: 161 AVYGGADKRAQIGALER----GAHIVVACPGRLLDLIQSGRTNLHRTTFLILDEADRMLD 216

Query: 407 -GV------------QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G             Q R  L   AT P  +   A+   +T     +G+    ++T  P 
Sbjct: 217 MGFEPQIRKIVGQIRQDRQTLMFSATWPKEIQKLASDFMKTPTQIFIGN---QELTANP- 272

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKA----YWICPQIEEKKESNFRSVVERFNS 509
                         I++V+E    V+S+  KA    YW   QI   K   F       ++
Sbjct: 273 -------------NIEQVVE----VVSDFDKAMRFNYWF-QQITSPKILVFTDTKRDCDN 314

Query: 510 LHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           L    ++     A IHG     ++E V+  F+NG   +L+AT V   G+D+ D   +I  
Sbjct: 315 LAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISVLVATDVAARGLDIDDIGTVINY 374

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +        +H++ GR  RGE+    I       +K++   + +L+  +
Sbjct: 375 DFPSQLEDYVHRI-GRTARGEKKGKSISFITAKSAKHASALVKLLEQAK 422


>gi|258645369|ref|ZP_05732838.1| primosomal protein [Dialister invisus DSM 15470]
 gi|260402718|gb|EEW96265.1| primosomal protein [Dialister invisus DSM 15470]
          Length = 791

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 7/142 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P   T  Q+ A++ I+  ++++     +L G  GSGKT V L A  +A+ AGG  ++  P
Sbjct: 258 PRKLTAEQKYAVEYIIGAVNEERYKGILLYGVTGSGKTEVYLRAAESAIAAGGTVLLEVP 317

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQD 388
              L  Q   +   Y  +  + +     N+ +  R    +RIA+ ++ IIIG+  ALF  
Sbjct: 318 EIALTNQMVSYFADYFGDKVVFMH---SNLSKGERYNNRQRIANEESSIIIGSRSALF-- 372

Query: 389 SIQYYKLILVIVDEQHRFGVQQ 410
            + +  L L+IVDE++    +Q
Sbjct: 373 -MPFKNLKLIIVDEEYDSSYKQ 393


>gi|28872121|ref|NP_794740.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|301384383|ref|ZP_07232801.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062325|ref|ZP_07253866.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           K40]
 gi|302132329|ref|ZP_07258319.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28855375|gb|AAO58435.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331014545|gb|EGH94601.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 459

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 147/325 (45%), Gaps = 32/325 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  ++   I V
Sbjct: 45  IAQAKTGSGKTAAFGIGLLNPINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 105 LTLCGGVSFGPQIGSLE---HG-AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRM- 159

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++   + I +++ K   R P +TV +   
Sbjct: 160 ------LDMGFYDSIADIIEQTPQRRQTLLFSATYPVGIKQLSSKFM-RDP-QTVKVEAL 211

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAI 520
             D  IE++   +S  ++   +   +   + ++   F    ++   + +H T+   S   
Sbjct: 212 HADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVG 271

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++ V+  F N +  +L+AT V   G+D +DA  +++ N E    +++H  R
Sbjct: 272 LHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVL-NVELARDSEIHIHR 329

Query: 581 -GRVGRGEEISSCILLYHPPLSKNS 604
            GR GR  E    + L  P  S+ +
Sbjct: 330 VGRTGRAGETGIAVSLVAPSESQRA 354


>gi|153827809|ref|ZP_01980476.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
 gi|148876654|gb|EDL74789.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
          Length = 428

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 120/278 (43%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E + +      +    + G
Sbjct: 66  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCG 125

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +A ++ AL        +I++ T      L Q  ++  ++  +++DE  R        
Sbjct: 126 GVDKAEQQNALAE----NPNILVATTGRLFDLTQSGLRLNRVTTLVLDEADR-------- 173

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 174 LLDMGFWPQVQALASQTATVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAV 233

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +      +HG  S
Sbjct: 234 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKS 293

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             ++E+ +  FKNG+ ++LIAT ++  GI +    ++I
Sbjct: 294 QSEREAALAEFKNGSTQVLIATDLLARGIHIEQLPVVI 331


>gi|148997163|ref|ZP_01824817.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|168575420|ref|ZP_02721356.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           MLV-016]
 gi|307067364|ref|YP_003876330.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
 gi|147756863|gb|EDK63903.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|183578611|gb|EDT99139.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           MLV-016]
 gi|306408901|gb|ADM84328.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
          Length = 447

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 154/352 (43%), Gaps = 38/352 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + F+ PT+ Q+  I  +L       R L + +   GSGKT   L+ +   ++     
Sbjct: 16  LKELKFTTPTEVQDKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDEASDS 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHII 379
            QAVI AP   LA Q Y+  ++ + ++ + V ++   G   +A   + +E++A  Q HI+
Sbjct: 70  VQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKA---RQIEKLASNQPHIV 126

Query: 380 IGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTAT 429
           IGT     D ++      +K    +VDE         L+   K           ++ +AT
Sbjct: 127 IGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSAT 186

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            IP+ L         + K    P   K IKT  +  + ID  +   K    +  + Y + 
Sbjct: 187 -IPQKLQPF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-HDKNAQIYQLT 237

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             ++      F +   R + LH + T+    +A IHG ++  +++ +M+  +N   + ++
Sbjct: 238 QLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 298 ATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|157804046|ref|YP_001492595.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel]
 gi|157785309|gb|ABV73810.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel]
          Length = 410

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 137/312 (43%), Gaps = 31/312 (9%)

Query: 302 VGSGKTLVALI-AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGKTL  L+  + + ++    A+I+ P   LA Q Y  + K T+  +I   ++ G  P
Sbjct: 45  TGSGKTLAYLLPVIDSFIKNKTTALILVPTRELATQIYSTLNKVTRYYKINSAVLIGGEP 104

Query: 361 QAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRL 412
              +   L++       +IIGT       L + S++  ++ + ++DE  R    G++++L
Sbjct: 105 MPKQFMQLKK----NPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQL 160

Query: 413 KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           +   K        LM +  +P+ ++  S   ++            P++  +   N+    
Sbjct: 161 EEINKFLPEKRQFLMFSATMPKHIITLSQKYLN-----------NPVRITVGANNKAAAE 209

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMS 526
           I++  + +++ +K   +  Q++ ++ S       R   ++  ++ ++       IHG +S
Sbjct: 210 IKQESIHIADKEKFSELTKQLDNREGSVIIFVKTRRSADQLANMLKYENHKAEAIHGDLS 269

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              +E V+ SF+    ++++AT V   G+D+     +I  +        LH++ GR GR 
Sbjct: 270 QRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRI-GRTGRA 328

Query: 587 EEISSCILLYHP 598
                 +    P
Sbjct: 329 GATGHALSFISP 340


>gi|291297189|ref|YP_003508587.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus ruber
           DSM 1279]
 gi|290472148|gb|ADD29567.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279]
          Length = 556

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 500 FRSVVERFNSLH---EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F S     N L    E    S A IHG M  ID+E VM+ F++G   +L+AT V   G+D
Sbjct: 244 FTSTKAECNDLALGLESRAHSAAPIHGDMGQIDRERVMERFRSGAVSVLVATDVAARGLD 303

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + +  +++         + LH+  GR GR       ++LY P
Sbjct: 304 IPEVDLVVHYRLPDQNESYLHR-SGRTGRAGRSGKVVILYGP 344


>gi|229822833|ref|ZP_04448903.1| hypothetical protein GCWU000282_00122 [Catonella morbi ATCC 51271]
 gi|229787646|gb|EEP23760.1| hypothetical protein GCWU000282_00122 [Catonella morbi ATCC 51271]
          Length = 801

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 93/417 (22%), Positives = 160/417 (38%), Gaps = 102/417 (24%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q++  + + Q +        +L+G  GSGKT V L  MA A + G  A+++ P   L
Sbjct: 267 TEAQKAVYEQVAQALEAHQDQTFLLEGVTGSGKTEVYLQLMAKASQMGRGAILLVPEIAL 326

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             Q    +++     Q  V ++   +  + +     RI  GQA I++G  +     I+  
Sbjct: 327 TPQ---MVRQVKSRFQTGVAVLHSGLTNSQKYDEWRRIIRGQATIVVGARSSIFAPIR-- 381

Query: 394 KLILVIVDEQHRFGVQQ----RLKLTQKA-------TAPHVLLMTATPIPRTLVLTSLGD 442
            L LVI+DE+H    +Q    R    + A        AP +LL +ATP   +     +G 
Sbjct: 382 DLGLVIIDEEHETTYKQSDTPRYHAREVAIWRCHYHQAP-LLLGSATPSLESRSRAQVGR 440

Query: 443 IDISKITEKPAGR--KPIKTVIIPINRIDEVIERLKVVLSE------------------- 481
               ++ E+  GR   P+  V +      +  + L  VL +                   
Sbjct: 441 YQHLRLPERVNGRPLPPVTLVDMTKEMAQQTTDELSSVLKDKITDRLAKGQQIVLLLNRR 500

Query: 482 GKKAYWI---------CPQIE-----EKKESNFRSVVERFNS------------------ 509
           G  +Y +         CP+ +      K E   +     + S                  
Sbjct: 501 GYASYMLCRECGQVIQCPRCDISLTYHKHEHRLKCHYCDYQSPVPDRCPNCHSDYLRTFG 560

Query: 510 ---------LHEHFTSSIAIIHGRMSDIDK-------ESVMDSFKNGTCKLLIATTVIEV 553
                    L++HF  +  I   RM D+D        E+++D F+     +L+ T +I  
Sbjct: 561 LGTQKIEELLNQHFPDARVI---RM-DMDTTRKKGQHEALLDRFRRHEADILLGTQMIAK 616

Query: 554 GIDVVDASIIIIENAE------HFGLAQ-----LHQLRGRVGRGE-EISSCILLYHP 598
           G+D    +++ + NA+       F   +     L Q+ GR GRG  E    I  Y+P
Sbjct: 617 GLDFEAVTLVGVINADTALNLPDFRAGEKTFQLLTQVAGRTGRGRFEGEVLIQTYNP 673


>gi|332704376|ref|ZP_08424464.1| primosomal protein N' [Desulfovibrio africanus str. Walvis Bay]
 gi|332554525|gb|EGJ51569.1| primosomal protein N' [Desulfovibrio africanus str. Walvis Bay]
          Length = 780

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 20/216 (9%)

Query: 251 IGIP-INVEGKIAQKILRNIPFSP--TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           IG+P  + E + A  +  + P  P  T  Q +A+ D+   M Q+N   R+L G  GSGKT
Sbjct: 220 IGLPPADQEDEAACAVDVSGPVWPEFTVEQTAALADMTAAMGQRNGQARLLYGITGSGKT 279

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +V L      + +G  A+++AP   LA   +   ++     +++  ++ G    A R +A
Sbjct: 280 MVYLRMAEECLSSGRSAILLAPEVALACSLHRQARERLPGWRVL--LVHGYQSPAKRERA 337

Query: 368 LERIAHGQAHI-IIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA------- 418
              +A  +  I ++GT  ALF   +   +  L+++DE+H    +Q  +L  +A       
Sbjct: 338 FREVAAVREPIVVVGTRSALF---LPVRRPGLIVLDEEHDESYKQDERLNYQAKEVAWVL 394

Query: 419 ---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
              T   ++L +ATP  +T      G +   ++ ++
Sbjct: 395 ARQTGSLLVLGSATPDVKTFHAAQNGHVPAVRLMQR 430


>gi|302815317|ref|XP_002989340.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii]
 gi|300142918|gb|EFJ09614.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii]
          Length = 653

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 126/310 (40%), Gaps = 43/310 (13%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   ++ M   +          G   VI AP   LAQQ +   +K+ +   I V 
Sbjct: 229 TGSGKTAAFVLPMIVHIMDQEELGKGEGPIGVICAPTRELAQQIFNESRKFAKPYGIRVS 288

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G M +  + K L+        I++ T     D     ++  ++   +++DE  R   
Sbjct: 289 GVFGGMSKLDQFKELK----AGCEIVVATPGRLIDMLKMKALTMFRATYLVLDEADRMFD 344

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             F  Q R  + Q       LL +AT +PR +           +   +     P++    
Sbjct: 345 LGFEPQIRSIVGQIRPDRQTLLFSAT-MPRRV-----------ETLAREVLSAPVRVTAG 392

Query: 464 PINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS- 517
            + R +E V +  ++V ++  K  W+  ++ +  ++     F S   R   L +H   S 
Sbjct: 393 EVGRANEDVTQVAQIVATDADKLQWMLSKLPQMVDAGDVLVFASTKVRVEELEKHLQDSG 452

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +A +HG      +  V+  FK+G   +L+AT V   G+D+     ++  +        
Sbjct: 453 FKVAALHGDKDQASRVDVLQGFKSGQFHVLVATDVAARGLDIKSIKTVVNYDTAKDMDTH 512

Query: 576 LHQLRGRVGR 585
           +H++ GR GR
Sbjct: 513 VHRV-GRTGR 521


>gi|149007640|ref|ZP_01831257.1| peptide chain release factor 2 [Streptococcus pneumoniae SP18-BS74]
 gi|147760795|gb|EDK67766.1| peptide chain release factor 2 [Streptococcus pneumoniae SP18-BS74]
          Length = 412

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 154/352 (43%), Gaps = 38/352 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + F+ PT+ Q+  I  +L       R L + +   GSGKT   L+ +   ++     
Sbjct: 16  LKELKFTTPTEVQDKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDEASDS 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHII 379
            QAVI AP   LA Q Y+  ++ + ++ + V ++   G   +A   + +E++A  Q HI+
Sbjct: 70  VQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKA---RQIEKLASNQPHIV 126

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTAT 429
           IGT     D ++   L +      +VDE         L+   K           ++ +AT
Sbjct: 127 IGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSAT 186

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            IP+ L         + K    P   K IKT  +  + ID  +   K    +  + Y + 
Sbjct: 187 -IPQKLQPF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-HDKNAQIYQLT 237

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             ++      F +   R + LH + T+    +A IHG ++  +++ +M+  +N   + ++
Sbjct: 238 QLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 298 ATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|226287504|gb|EEH43017.1| ATP-dependent RNA helicase DBP3 [Paracoccidioides brasiliensis
           Pb18]
          Length = 486

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 143/326 (43%), Gaps = 43/326 (13%)

Query: 300 GDVGSGKTLV-ALIAMAAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +  +   +E  G        AVI+ P   LA Q Y+ + K+T N  + 
Sbjct: 114 AETGSGKTLAFGVPCIRKVLEINGSRSSSRISAVIITPTRELATQIYDQLIKFTPN-NVG 172

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
           +  I G   +  +R+AL++     A +++ T    +D     S++  K+  +++DE  R 
Sbjct: 173 IACIYGGASKDDQRRALKK-----ASVVVATTGRLKDFQGDESLRLDKVKYLVLDEADRM 227

Query: 407 ---GVQQRLKLTQKATAP----HVLLMTAT-PIP-RTLVLTSLGD---IDISKITEKPAG 454
              G +Q +K    A         ++ TAT PI  R L  T + D   I I  ++     
Sbjct: 228 LDKGFEQDIKDIVDAMPSSKKRQTVMFTATWPISVRKLAATFMKDHVTITIGDLSSDIRA 287

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSE---GKKAY-WICPQIEEKKESNFRSVVERFNSL 510
              IK  I+ + + ++   RL  +L++   GK A   +      KKE+       R   L
Sbjct: 288 NTRIKQ-IVEVLKPEDKEHRLLSLLNQYQRGKNAMDKVLVFCLYKKEAT------RIERL 340

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  +A IHG M+  ++   +D+FK+G   LL+AT V   G+D+    +++      
Sbjct: 341 IRSKGFKVAGIHGDMNQTERFKSLDAFKSGAVPLLVATDVAARGLDIPAVRLVLNVTFPL 400

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY 596
                +H++ GR GR       I ++
Sbjct: 401 TVEDYVHRI-GRTGRAGADGLAITMF 425


>gi|195115577|ref|XP_002002333.1| GI13281 [Drosophila mojavensis]
 gi|193912908|gb|EDW11775.1| GI13281 [Drosophila mojavensis]
          Length = 649

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 134/327 (40%), Gaps = 52/327 (15%)

Query: 302 VGSGKTLVALIAMAAAV-------EAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   L+ + + +       E G  QAVI++P   LA Q +   +K+  +T + + 
Sbjct: 281 TGSGKTAAFLLPILSNILDESHDLEIGKPQAVIVSPTRELAIQIFNEARKFAYSTYLKIS 340

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHRF-- 406
           I+ G     ++ + + +      H++I T     D      I +     V++DE  R   
Sbjct: 341 IVYGGTSFKYQNECITK----GCHVLIATPGRLLDFVDRTFITFNDTRFVVLDEADRMLD 396

Query: 407 -GVQQRLKLT---QKATAPHVLLMTATPIP-----------RTLVLTSLGDIDISKITEK 451
            G    ++     Q   A H  LM +   P           R  V  ++G +        
Sbjct: 397 MGFSDSMRKIMHHQTMRAEHQTLMFSATFPEEIQRMAGEFLRNYVFVTIGVV-------- 448

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                 ++  I  +N+ ++   +L  +L EG     +   +E K+ ++F   +  F S  
Sbjct: 449 GGACSDVQQTIYEVNKFNKR-SKLMEILREGADGTIVF--VETKRAADF---LASFFSET 502

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E  T+SI   HG      +E  +  FKNGT K+LIAT+V   G+D+ +   +I  +    
Sbjct: 503 EFPTTSI---HGDRLQSQREQALRDFKNGTMKVLIATSVASRGLDIKNVKHVINYDMPSN 559

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHP 598
               +H++ GR GR          + P
Sbjct: 560 IDDYVHRI-GRTGRVGNSGRATSFFDP 585


>gi|225860734|ref|YP_002742243.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229616|ref|ZP_06963297.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255810|ref|ZP_06979396.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502545|ref|YP_003724485.1| ATP-dependent RNA helicase [Streptococcus pneumoniae TCH8431/19A]
 gi|225727110|gb|ACO22961.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238140|gb|ADI69271.1| ATP-dependent RNA helicase [Streptococcus pneumoniae TCH8431/19A]
 gi|327390117|gb|EGE88460.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA04375]
          Length = 447

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 154/352 (43%), Gaps = 38/352 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + F+ PT+ Q+  I  +L       R L + +   GSGKT   L+ +   ++     
Sbjct: 16  LKELKFTTPTEVQDKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDEASDS 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHII 379
            QAVI AP   LA Q Y+  ++ + ++ + V ++   G   +A   + +E++A  Q HI+
Sbjct: 70  VQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKA---RQIEKLASNQPHIV 126

Query: 380 IGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTAT 429
           IGT     D ++      +K    +VDE         L+   K           ++ +AT
Sbjct: 127 IGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSAT 186

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            IP+ L         + K    P   K IKT  +  + ID  +   K    +  + Y + 
Sbjct: 187 -IPQKLQPF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-HDKNAQIYQLT 237

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             ++      F +   R + LH + T+    +A IHG ++  +++ +M+  +N   + ++
Sbjct: 238 QLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 298 ATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|145631415|ref|ZP_01787185.1| primosome assembly protein PriA [Haemophilus influenzae R3021]
 gi|144982952|gb|EDJ90461.1| primosome assembly protein PriA [Haemophilus influenzae R3021]
          Length = 730

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 158/389 (40%), Gaps = 94/389 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +++G Q +++ P IG+  Q  + F  ++     + ++++
Sbjct: 222 LLDGVTGSGKTEIYLQYIEEILKSGKQVLVLVPEIGLTPQTVHRFKARFN----VEIDVL 277

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLK- 413
             N+    R    +R   GQ+ I+IGT  ALF    Q+  L  +I+DE+H    +Q+   
Sbjct: 278 HSNLTDTQRLYVWDRARSGQSAIVIGTRSALF---TQFSNLGAIILDEEHDTSYKQQDSW 334

Query: 414 ----------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                     L QK     VL+ +ATP   ++     G      ++++      ++  +I
Sbjct: 335 RYHARDLATVLAQKLNIA-VLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVI 393

Query: 464 PI------NRIDE-VIERLKVVLSEGKKAY------------------WI--CPQIEEKK 496
            +      N + + ++ER+K  L +G +                    WI  CP  E+  
Sbjct: 394 DLKNQHIQNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPY 453

Query: 497 ESNFRSVVERFN----------------SLH--------EHFTSSIAII--HGRMSDIDK 530
             +    V R +                S H        E    ++  +  H  ++ ID+
Sbjct: 454 TYHQHQNVLRCHHCGAQKTIPRQCGDCGSTHLVTTGLGTEQLEETLKTLFPHYSVARIDR 513

Query: 531 ---------ESVMDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHF 571
                    ES ++  + G  ++LI T ++           V +  VD+++  ++     
Sbjct: 514 DSTARKGKLESYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNVDSALFSLDFRAEE 573

Query: 572 GLAQLH-QLRGRVGRGEEISSCILLYHPP 599
            LAQL+ Q+ GR GR ++    +L  H P
Sbjct: 574 RLAQLYIQVAGRAGRADKQGEVVLQTHYP 602


>gi|224825377|ref|ZP_03698482.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224602298|gb|EEG08476.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 460

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 142/340 (41%), Gaps = 38/340 (11%)

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           NR   I Q   GSGKT    + +   +       QA+++ P   LA Q  + I++  ++ 
Sbjct: 40  NRQDLIAQAKTGSGKTAAFGLGLLDKINPRWFAVQALVLCPTRELADQVAKEIRRLARSV 99

Query: 349 -QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             I V  + G  P   +  +LE   HG AH+++GT     D +    L L     +++DE
Sbjct: 100 DNIKVVTLCGGTPMGPQIGSLE---HG-AHVVVGTPGRLHDHLSRNTLDLSTVETLVLDE 155

Query: 403 QHRF---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
             R    G  + +          V ++ A P  R  +L S    D  +       + P++
Sbjct: 156 ADRMVDMGFYEEI----------VGIVAACPRKRQTLLFSATYPDTIRKQSARFLKNPVE 205

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWIC------PQIEEKKESNFRSVVERFNSLHEH 513
             +  ++    + +    +  E + A          P       +  + V E  N L + 
Sbjct: 206 VKVESLHDAGHIEQHFYKIQPERRVATVAALLGHFRPVSTIAFCNTKQQVRELANELQQQ 265

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             S++A+ +G +   +++ ++  F N +C +L+AT V   G+D+     +I  +  H   
Sbjct: 266 GFSALAL-YGELEQRERDEILVQFANRSCSVLVATDVAARGLDISTLEAVINVDLSHDPE 324

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
             +H++ GR GRG E    + L  P    N   RL+++++
Sbjct: 325 IHIHRI-GRTGRGGEKGLALSLVGP----NDSKRLALIED 359


>gi|225016981|ref|ZP_03706173.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
           DSM 5476]
 gi|224950247|gb|EEG31456.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
           DSM 5476]
          Length = 563

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 138/340 (40%), Gaps = 79/340 (23%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA-----GGQAVIMAPIGILAQQ---HYEFIKKYTQNT 348
           I +   G+GKT+   +     ++        Q +I+ P   LA Q     E I KY +  
Sbjct: 45  IGRSQTGTGKTVAFGVPAVELIDTEELRNKTQVLILCPTRELAVQACSEIEKIAKYKRGV 104

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIV 400
           + +   I G  P     + + R+  G A+I++GT     D ++   L        IL   
Sbjct: 105 RAV--DIYGGAPMD---RQIMRLKRG-ANIVVGTPGRVMDHLRRRTLKLDHLKMIILDEA 158

Query: 401 DEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT-------SLGDIDISKIT-- 449
           DE    G ++ ++  L Q       +L +AT  P  L LT        L +I+  ++T  
Sbjct: 159 DEMLNMGFREDVETILKQTPDERQTILFSATMPPAILALTKQYQKDPQLIEINRKQVTLD 218

Query: 450 -------EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNF 500
                  E P GRK               ++ L ++L     A  I  C         N 
Sbjct: 219 NIEQQFYEVPMGRK---------------MDALGIILQYHDPALSIIFC---------NT 254

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           + +V+   +  +    S   +HG M    +  VMDSFK G  K+L+AT V   GIDV + 
Sbjct: 255 KRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKILVATDVAARGIDVNNV 314

Query: 561 SIII----IENAEHFGLAQLHQLRGRVGR----GEEISSC 592
             +I     +N E++    +H++ GR GR    G+ ++ C
Sbjct: 315 DYVINYDVPQNQEYY----VHRI-GRTGRAGKEGKAVTIC 349


>gi|121533704|ref|ZP_01665531.1| primosomal protein N' [Thermosinus carboxydivorans Nor1]
 gi|121307695|gb|EAX48610.1| primosomal protein N' [Thermosinus carboxydivorans Nor1]
          Length = 811

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 20/202 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q  A+  IL  ++ +     ++ G  GSGKT V + A AAA + G Q ++M P I +
Sbjct: 280 TNEQRQAVTQILAAIASREHKSFLIHGVTGSGKTQVYIEAAAAARQQGRQVIVMVPEIAL 339

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F +++ ++    V ++   +    R  A +RI  G+A I+IG   A+F    Q
Sbjct: 340 TGQTVSRFNERFGED----VVVVHSRLSAGERHDAWQRIRAGEAGIVIGARSAVFAPCTQ 395

Query: 392 YYKLILVIVDEQHRFGVQQRLK----------LTQKATAPHVLLMTATPIPRTLVLTSLG 441
              + L+I+DE+H F  +Q             +  +     V+L +ATP   +      G
Sbjct: 396 ---IGLIILDEEHEFTYKQEESPRYHTREVALMRARQAGASVVLGSATPSLESYYQALAG 452

Query: 442 DIDISKITEKPAGRK-PIKTVI 462
              +  ++E+  GR  P  TV+
Sbjct: 453 RHVLLTLSERVDGRALPAVTVV 474


>gi|313213311|emb|CBY37141.1| unnamed protein product [Oikopleura dioica]
          Length = 499

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 140/349 (40%), Gaps = 62/349 (17%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     + A        G  AVI+AP   LA+Q  E  +++ +   +   
Sbjct: 101 TGSGKTLAFVLPSIIHIMAQPDLRPGDGPVAVILAPTRELAKQVQEVAEQFGKPCGVNTV 160

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF-- 406
            + G   +  +  ALER     AHI++       D IQ      ++   +I+DE  R   
Sbjct: 161 AVYGGADKRAQIGALER----GAHIVVACPGRLLDLIQSGRTNLHRTTFLILDEADRMLD 216

Query: 407 -GV------------QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G             Q R  L   AT P  +   A+   +T     +G+    ++T  P 
Sbjct: 217 MGFEPQIRKIVGQIRQDRQTLMFSATWPKEIQKLASDFMKTPTQIFIGN---QELTANP- 272

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKA----YWICPQIEEKKESNFRSVVERFNS 509
                         I++V+E    V+S+  KA    YW   QI   K   F       ++
Sbjct: 273 -------------NIEQVVE----VVSDFDKAMRFNYWF-QQITSTKILVFTDTKRDCDN 314

Query: 510 LHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           L    ++     A IHG     ++E V+  F+NG   +L+AT V   G+D+ D   +I  
Sbjct: 315 LAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISVLVATDVAARGLDIDDIGTVINY 374

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +        +H++ GR  RGE+    I       +K++   + +L+  +
Sbjct: 375 DFPSQLEDYVHRI-GRTARGEKKGKSISFITAKSAKHASALVKLLEQAK 422


>gi|312793803|ref|YP_004026726.1| DEAD/DEAH box helicase domain-containing protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180943|gb|ADQ41113.1| DEAD/DEAH box helicase domain protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 1094

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 135/324 (41%), Gaps = 56/324 (17%)

Query: 302 VGSGKTLVALI-AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGK+L+  I A+  A E     +I++P+  L +   E +K    N     E I   + 
Sbjct: 334 TGSGKSLLFQIPAIYLAEEKNAVTIIVSPLISLMRDQVESLK---DNGVNFAETINSQVT 390

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQH-------RFGV 408
            + +   ++++  G+  II  +      S     I   KL L ++DE H        F V
Sbjct: 391 YSEKEIIIQKLKDGEISIIYLSPEFLLSSPIETLIGNRKLGLFVIDEAHLVTTWGRDFRV 450

Query: 409 Q--------QRLKLTQKATAPHVLLMTATPI---PRTLVLTSLGDIDISKITEK--PAGR 455
                    ++L+       P V+ +TAT +   P  +VL ++ ++++ K      PA R
Sbjct: 451 DYWYLGDYIKKLRELLNMKFP-VVCLTATAVYQGPDDMVLETVENLNLRKCKYYLGPAKR 509

Query: 456 KPI-------KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
           + I       K ++   +R  I+   ER++  L   +K+   CP       ++  S+   
Sbjct: 510 ENIEFEIKYHKDLVGSHDRFKIERAKERIEEFLERKEKSVIYCPYT-----THVESIYNE 564

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            ++ ++HF   +   +G +  + K      FK G  K++I T    +G+DV D     I 
Sbjct: 565 LDAKYKHF---VGKYYGDLDKLTKNDNQVEFKEGLKKIMICTKAFGMGVDVKD-----IV 616

Query: 567 NAEHFG----LAQLHQLRGRVGRG 586
           N  H+     LA   Q  GR  R 
Sbjct: 617 NIYHYAPTGNLADYVQEIGRAARN 640


>gi|71895253|ref|NP_001025971.1| ATP-dependent RNA helicase DDX3X [Gallus gallus]
 gi|60098425|emb|CAH65043.1| hypothetical protein RCJMB04_2a4 [Gallus gallus]
          Length = 651

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 170/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK----------- 260
           K+ + +W+ P    ERL   EL +G    +     F+K   IP+   G            
Sbjct: 122 KSDEDDWSKPLPPSERLE-QELFSGSNTGI----NFEKYDDIPVEATGSNCPPHIESFSD 176

Query: 261 --IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             + + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 177 VDMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 230

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + A G                      ++++AP   LA Q YE  +K+   +++   
Sbjct: 231 LSQIYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPC 290

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 291 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 346

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 347 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 405

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  +D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 406 NITQKVVWVEELDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---ALEDF-LYHEGY-- 458

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 459 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 506


>gi|312877326|ref|ZP_07737292.1| DEAD/DEAH box helicase domain protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795889|gb|EFR12252.1| DEAD/DEAH box helicase domain protein [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 1094

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 135/324 (41%), Gaps = 56/324 (17%)

Query: 302 VGSGKTLVALI-AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGK+L+  I A+  A E     +I++P+  L +   E +K    N     E I   + 
Sbjct: 334 TGSGKSLLFQIPAIYLAEEKNAVTIIVSPLISLMRDQVESLK---DNGVNFAETINSQVT 390

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQH-------RFGV 408
            + +   ++++  G+  II  +      S     I   KL L ++DE H        F V
Sbjct: 391 YSEKEIIIQKLKDGEISIIYLSPEFLLSSPIETLIGNRKLGLFVIDEAHLVTTWGRDFRV 450

Query: 409 Q--------QRLKLTQKATAPHVLLMTATPI---PRTLVLTSLGDIDISKITEK--PAGR 455
                    ++L+       P V+ +TAT +   P  +VL ++ ++++ K      PA R
Sbjct: 451 DYWYLGDYIKKLRELLNMKFP-VVCLTATAVYQGPDDMVLETVENLNLRKCKYYLGPAKR 509

Query: 456 KPI-------KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
           + I       K ++   +R  I+   ER++  L   +K+   CP       ++  S+   
Sbjct: 510 ENIEFEIKYHKDLVGSHDRFKIERAKERIEEFLERKEKSVIYCPYT-----THVESIYNE 564

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            ++ ++HF   +   +G +  + K      FK G  K++I T    +G+DV D     I 
Sbjct: 565 LDAKYKHF---VGKYYGDLDKLTKNDNQVEFKEGLKKIMICTKAFGMGVDVKD-----IV 616

Query: 567 NAEHFG----LAQLHQLRGRVGRG 586
           N  H+     LA   Q  GR  R 
Sbjct: 617 NIYHYAPTGNLADYVQEIGRAARN 640


>gi|218674642|ref|ZP_03524311.1| DEAD/DEAH box helicase domain protein [Rhizobium etli GR56]
          Length = 420

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 150/361 (41%), Gaps = 46/361 (12%)

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++QK+L  +  +    PT  Q  AI   L+    +  +  I Q   G+GKT   ++ M +
Sbjct: 9   LSQKVLSAVTDAGYTIPTPIQAGAIPFALE----RRDICGIAQ--TGTGKTASFVLPMLS 62

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q  E  +KY +N ++ V ++ G +    + + LER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER 122

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKA 418
                A ++I T     D  +  KL++     +++DE  R         +++  KL    
Sbjct: 123 ----GADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFT 178

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIER 474
                   T  P  + L    L + +  ++ +  +  K +    +  +  D     V+  
Sbjct: 179 RQTLFFSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRE 238

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L     E K A   C     KK+     V + F SL  H   S+  +HG M    +  ++
Sbjct: 239 LVRAQGELKNAIIFC---NRKKD-----VADLFRSLERH-GFSVGALHGDMDQRSRTMML 289

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            SF++G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR     +   
Sbjct: 290 QSFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRI-GRTGRAGRSGAAFT 348

Query: 595 L 595
           L
Sbjct: 349 L 349


>gi|213422340|ref|ZP_03355406.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 193

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 15/188 (7%)

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFH 146
           RR     ++DG+G +T+ FF     M KN    GR++   G+ K+ K    M+HP Y   
Sbjct: 11  RRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKRGKYGAEMIHPEYRLQ 69

Query: 147 NSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKKSFP 200
              D++ P ++     VY    G+     +K+  +AL  L    + E +  +L Q     
Sbjct: 70  G--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAIAELLPPELAQ--GMM 125

Query: 201 SIAEAFNIIHNPR---KAKDFEW-TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
           S+ EA   +H P    +  D E    PA+ RL  +ELLA  +++L +R   ++    P++
Sbjct: 126 SLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSMLALRAGAQRYHTQPLS 185

Query: 257 VEGKIAQK 264
               +  K
Sbjct: 186 TNNILKDK 193


>gi|195048170|ref|XP_001992482.1| GH24775 [Drosophila grimshawi]
 gi|193893323|gb|EDV92189.1| GH24775 [Drosophila grimshawi]
          Length = 977

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 3/105 (2%)

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           +E +T++   IHG  S  +++SV+  F+NG   +LIAT V   G+DV D   +I  +  +
Sbjct: 515 NEGYTATS--IHGDKSQSERDSVLRDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPN 572

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
                +H++ GR GR +++ +    + P  +K +   +SVL+  E
Sbjct: 573 SSENYVHRI-GRTGRCQQLGTAYTFFTPDNAKQARELISVLEEAE 616


>gi|319937738|ref|ZP_08012141.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1]
 gi|319807173|gb|EFW03787.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1]
          Length = 479

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 168/389 (43%), Gaps = 45/389 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N++G+I Q  L  + +S     +SA+   + ++ Q+  +  I++   GSGKT    I +
Sbjct: 6   LNIDGRI-QDALEKLGYSEATEVQSAV---IPELKQERDV--IVKAKTGSGKTAAFAIPL 59

Query: 315 AAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             +V   E   Q +++ P   LA Q  E         +I    I G  P   + + L++ 
Sbjct: 60  LDSVVWEENKPQVLVLTPTRELAIQVKEDFDNIGTYKKIKTLAIFGKQPYKFQTQDLKQ- 118

Query: 372 AHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFG-VQQRLKLTQKATAPH 422
              + H+++ T     D +Q           L+L   DE    G ++   K+ +K     
Sbjct: 119 ---KTHVVVATPGRILDHLQRGTFDASHLKYLVLDEADEMLNMGFIETVEKIIEKLPVKR 175

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
              + +  +P           +I K+  K   + P++  I     I++ IE     +   
Sbjct: 176 TTCLFSATLPE----------EIKKLAAKFM-KNPVQVNIKQSQVINQKIETYAYEVMSY 224

Query: 483 KKAYWICPQIEEKKESN---FRSVVERFNSLHEH-FTSSIAI--IHGRMSDIDKESVMDS 536
           +KA ++   I  +K S+   F    ER N +++  + + I++  IHG M   D+   M+ 
Sbjct: 225 EKAGFLLKLIVHEKPSSAIIFCETQERVNEVYDMLYKNGISVHKIHGGMLQTDRLENMND 284

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G  + L+AT V   GID+ + S +I  +        +H++ GR  R  +    I L 
Sbjct: 285 FRLGKVQFLVATDVAARGIDIENISHVINYDLPREAQNYIHRI-GRTARIGKAGIAISL- 342

Query: 597 HPPLSKNSYTRLSVLKN-TEDGFLIAEED 624
              LSK+ Y R   +++ TE  F I + +
Sbjct: 343 ---LSKDDYKRRMCIEDYTETSFDIKDNE 368


>gi|148985890|ref|ZP_01818984.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|169832682|ref|YP_001694222.1| ATP-dependent RNA helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|147922036|gb|EDK73160.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|168995184|gb|ACA35796.1| ATP-dependent RNA helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|301799777|emb|CBW32346.1| putative helicase [Streptococcus pneumoniae OXC141]
          Length = 447

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 137/315 (43%), Gaps = 31/315 (9%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT-- 356
            GSGKT   L+ +   ++      QAVI AP   LA Q Y+  ++ + ++ + V ++   
Sbjct: 47  TGSGKTHTFLLPIFQQLDEASDSVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYV 106

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQR 411
           G   +A   + +E++A  Q HI+IGT     D ++      +K    +VDE         
Sbjct: 107 GGTDKA---RQIEKLASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGF 163

Query: 412 LKLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           L+   K           ++ +AT IP+ L         + K    P   K IKT  +  +
Sbjct: 164 LETVDKIAGSLPKDLQFMVFSAT-IPQKLQPF------LKKYLSNPVMEK-IKTKTVISD 215

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHG 523
            ID  +   K    +  + Y +   ++      F +   R + LH + T+    +A IHG
Sbjct: 216 TIDNWLISTKG-HDKNAQIYQLTQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHG 274

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            ++  +++ +M+  +N   + ++AT +   GID+   S +I +         +H++ GR 
Sbjct: 275 DIAPRERKRIMNQVQNLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRT 333

Query: 584 GRGEEISSCILLYHP 598
           GR     + I LY P
Sbjct: 334 GRNGLPGTAITLYQP 348


>gi|125623300|ref|YP_001031783.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492108|emb|CAL97037.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300070051|gb|ADJ59451.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 446

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 152/361 (42%), Gaps = 51/361 (14%)

Query: 263 QKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            + L NI F  PT+ Q+  I  +L       R L + +   GSGKT   L+ +   +   
Sbjct: 13  NQTLENIKFEKPTEVQQKLIPIVLS-----GRDL-VGESKTGSGKTHTFLLPIFQNINPE 66

Query: 322 ---GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
               QAVI AP   LA Q Y+  +++ + N +I V    G   +A + K LE     Q H
Sbjct: 67  LDEVQAVITAPSRELATQIYKAAQEFVKVNDKIRVSNFVGGTDKARQIKKLE---AAQPH 123

Query: 378 IIIGTHALFQDSIQYYKLIL-----VIVDEQH---RFGVQQRLKLTQKATAPHV-LLMTA 428
           I+IGT     D ++   L++      +VDE       G    +     +    V +L+ +
Sbjct: 124 IVIGTPGRIHDLVKSNALVVHTARTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFS 183

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGKK 484
             IP+ L               +P  +K    P+   I     I + IE   +V ++G  
Sbjct: 184 ATIPQKL---------------QPFLKKYLHNPVMEKIANKTVISDTIENW-LVSTKGSS 227

Query: 485 AYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
              +  Q+ +         F +   R + +H   TS+   +A IHG +   +++ +M+S 
Sbjct: 228 HNQLLLQLTKALNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSI 287

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN   + ++AT +   GID+   S II +         +H++ GR GR     + I LY 
Sbjct: 288 KNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRV-GRSGRNGLRGTAITLYS 346

Query: 598 P 598
           P
Sbjct: 347 P 347


>gi|213018866|ref|ZP_03334674.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212995817|gb|EEB56457.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 402

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 129/277 (46%), Gaps = 39/277 (14%)

Query: 302 VGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIVEIITG 357
            G+GKTL   I + A +    + G A+++ P   LA Q    I+K  +Q++ + V ++ G
Sbjct: 42  TGTGKTLAFAIPLVAKLMNEPSIGSALVIVPTRELAHQVTSEIRKLLSQSSLLRVALLIG 101

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHR-----FG 407
             P   +   L++    +  IIIGT     D I+   L+     ++++DE  R     FG
Sbjct: 102 GEPIFRQLNQLQK----KPQIIIGTPGRIIDHIERKTLVTRNVGILVLDETDRMFDMGFG 157

Query: 408 VQQRLKLTQKATAPHVLLMTATP-IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           +Q               +M   P I +TL+ ++    +I K+TEK    +P +  +    
Sbjct: 158 IQIEE------------IMKHLPKIRQTLMFSATLPGEIVKLTEKYLN-QPERVSVDCQA 204

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAI 520
                I++  V  SE +K   +  Q+ ++K S        R   +  + LH+   S++AI
Sbjct: 205 TTSVKIKQEVVYASESEKYGKLVTQLCQRKGSIIIFVKTKRGADQLADKLHKDDYSALAI 264

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            HG +    +E V+DSF+ G  ++++AT V   G+D+
Sbjct: 265 -HGDLRQHKRERVIDSFRRGRNQIMVATDVASRGLDI 300


>gi|167624613|ref|YP_001674907.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167354635|gb|ABZ77248.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 458

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 141/356 (39%), Gaps = 55/356 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV-------ALIAMAAAVEAGGQA 324
           +PT+ QE AI   L   + K+ M        GSGKTL         LI+  A  +   + 
Sbjct: 33  TPTEIQEQAIPIAL---AGKDLMA---SSKTGSGKTLAFLLPAMQRLISCKALSKRDPRV 86

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI+ P   LA Q Y  ++    NTQ     I G      + KAL R      H ++ T  
Sbjct: 87  VILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKALAR----DPHFVVATPG 142

Query: 385 LFQDSIQYYK-----LILVIVDEQHR---FGVQQRLKLTQKATAPH----VLLMTATPIP 432
              D ++ +      L L+I+DE  R    G  ++LKL   A A H     L+ +A    
Sbjct: 143 RLADHLKQHHLHLNGLELLILDEADRMLDLGFAEQLKLINNA-ADHKRRQTLMFSA---- 197

Query: 433 RTLVLTSLGDI--DISKITEKPA------GRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            TL    + DI  ++ K  E  A        K I   I   + +D     L  +L E ++
Sbjct: 198 -TLDHGDVNDIANELLKFPEHVAIGASNLEHKDITQRIFLCDHLDHKEAILTRILKEEQQ 256

Query: 485 AYWICPQIEEKKESNFRS--VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              I      +      +    E F +         A + G +    +  +MD F  G  
Sbjct: 257 KQIIIFTATRQDTDRLATKLAAEGFKT---------ASLSGELKQNARNQIMDEFSRGLQ 307

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ++L+ T V   G+D+++ S++I  +   F    +H++ GR GR       I L  P
Sbjct: 308 QILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDAISLVGP 362


>gi|326430393|gb|EGD75963.1| vasa [Salpingoeca sp. ATCC 50818]
          Length = 873

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 137/321 (42%), Gaps = 35/321 (10%)

Query: 300 GDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKT   +  M   +          G  AV++AP   L  Q  +  ++Y ++  I 
Sbjct: 338 AETGSGKTAAFVWPMIKHILDQPDLKRGDGPIAVLLAPTRELCMQISQNTRRYAKHYNIR 397

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR- 405
           V  + G   +  + K L+        +++ T     D I+       ++  +++DE  R 
Sbjct: 398 VATVYGGGSRYEQVKTLK----DGCEVVVATPGRLIDLIKDKATNLRRVTYLVLDEADRM 453

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           F +   L++       + ++    P  +TL+ T+     + K+  + A R P++ V+  +
Sbjct: 454 FDMGFSLQV-------NSIINHTRPDRQTLLFTATFKKKVEKLARQ-ALRNPVRIVVGTV 505

Query: 466 NRIDEVIE-RLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS--- 517
            + +  IE R++++     K  W+   + E + +     F +      +LHE   ++   
Sbjct: 506 GKANTDIEQRVEIMQDTASKWGWLKAHLVEMQSAGNVLVFVNKKADAETLHESMVAAGFQ 565

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
             +IHG +  I ++ V+  FK  T ++L+AT V   G+D+     ++  +A        H
Sbjct: 566 AVVIHGDIDQITRQEVLSKFKKQTVRILVATDVAARGLDIPSVRNVVNFDAAMSIDTHTH 625

Query: 578 QLRGRVGRGEEISSCILLYHP 598
           ++ GR GR     +   L  P
Sbjct: 626 RI-GRTGRAGVKGTAWTLLLP 645


>gi|209808970|ref|YP_002264508.1| ATP-dependent RNA helicase DbpA [Aliivibrio salmonicida LFI1238]
 gi|208010532|emb|CAQ80900.1| ATP-independent RNA helicase (DEAD/DEAH box helicase) [Aliivibrio
           salmonicida LFI1238]
          Length = 462

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 140/322 (43%), Gaps = 39/322 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I QG  GSGKT    + + A ++      Q++++ P   LA Q    I+K  ++   I V
Sbjct: 45  IAQGKTGSGKTAAFGLGLLANLDVKRFRVQSLVLCPTRELADQVAVEIRKLARSIHNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P   +  +LE   HG AHII+GT    ++ ++   L L      ++DE  R  
Sbjct: 105 LTLCGGVPFGPQIGSLE---HG-AHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRML 160

Query: 407 --GVQQ--RLKLTQKATAPHVLLMTATPIPRTLVLTSLGD-IDISKITEKPAGRKPIKTV 461
             G Q    L L         LL +AT  P+   + S+ D I  + I  K   +    ++
Sbjct: 161 EMGFQDAIDLVLDHAPAKRQNLLFSATFPPQ---IKSIADRIMNNPIMTKAEDKIEETSI 217

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTS 516
                ++D+  +RLK        A  I   ++ + ES     N + V +       HF  
Sbjct: 218 TQHFYKVDDFEDRLK--------ALQIL-LLKHRPESTVIFCNTKRVTQEVADELRHFDF 268

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S+  +HG +   D++  +  F N +  +L+AT V   G+D+     +I  N E     ++
Sbjct: 269 SVTALHGDLEQRDRDKALVRFANKSTSILVATDVAARGLDIDSLDAVI--NFELSRDPEV 326

Query: 577 HQLR-GRVGRGEEISSCILLYH 597
           H  R GR GR  +    + L++
Sbjct: 327 HVHRIGRTGRAGKKGIALSLFN 348


>gi|261404961|ref|YP_003241202.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261281424|gb|ACX63395.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
          Length = 506

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 130/295 (44%), Gaps = 47/295 (15%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A++++P   LA Q  + +K Y+Q T++    I G + Q  + +AL++     A I+I T
Sbjct: 77  RALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERALQQ----GADILIAT 132

Query: 383 HA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTAT-PI 431
                  + Q  +    + ++++DE  R    G    +K  + +  +    L  +AT P 
Sbjct: 133 PGRLLDLMNQKHVDLQHVEILVLDEADRMLDMGFIHDVKRIIAKMPSKKQTLFFSATMPA 192

Query: 432 PRT-LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             T LV T L +              P+K  I P++   E IE+   +L  G K   +  
Sbjct: 193 EITQLVQTLLHN--------------PVKVEITPVSSTAERIEQSVYLLETGNKQQQLN- 237

Query: 491 QIEEKKESNFRSVV---------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
             E  K+ +  S +         +R          +   IHG  S   +++ +++FK+G 
Sbjct: 238 --ELMKDPSIVSALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGA 295

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
            ++L+AT +   GID+ + S +I  N  +     +H++ GR GR    G  IS C
Sbjct: 296 TRVLVATDIAARGIDIDELSHVINFNLPNIPETYVHRI-GRTGRAGLSGTAISFC 349


>gi|304320267|ref|YP_003853910.1| hypothetical protein PB2503_03462 [Parvularcula bermudensis
           HTCC2503]
 gi|303299169|gb|ADM08768.1| hypothetical protein PB2503_03462 [Parvularcula bermudensis
           HTCC2503]
          Length = 623

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 131/325 (40%), Gaps = 38/325 (11%)

Query: 297 ILQGDVGSGKTLVALIAMA-------AAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AM        A +  GG   A+++AP   LA Q    I      
Sbjct: 44  LVSAQTGSGKTVAFGLAMGPDLMRGQARLPRGGVPLALVVAPTRELAMQVAREITWLYAE 103

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399
           T   V    G M     R+AL+R     AHI++GT     D I    L        IL  
Sbjct: 104 TGATVATCVGGMDLRRERQALDR----GAHIVVGTPGRLVDHISRDALDLSALRVAILDE 159

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            DE  + G +Q L+    A A            RTL+ ++     I K+  +   R  ++
Sbjct: 160 ADEMLKLGFRQELEAILDACAEDR---------RTLMFSATVGGGIGKLAAQ-YQRDALR 209

Query: 460 -TVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKES----NFRSVVERFNSLHEH 513
            +   P    D++  +  V    + +KA     +  E + +      R+ V R  S   +
Sbjct: 210 ISASGPARSHDDIAYKAMVTSQHDAEKAIINTLRFHEAENAIVFCGTRAAVARLTSRLAN 269

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S+  + G +S  ++ + + + ++G  ++ +AT V   GID+    ++I  +      
Sbjct: 270 RGFSVVSLSGELSQQERTNALQAMRDGRARVCVATDVAARGIDLPGLELVIHADLPKDRE 329

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
             LH+  GR GR     + +L+  P
Sbjct: 330 GLLHR-SGRTGRAGRKGTSVLVVPP 353


>gi|302307011|ref|NP_983480.2| ACR078Wp [Ashbya gossypii ATCC 10895]
 gi|299788794|gb|AAS51304.2| ACR078Wp [Ashbya gossypii ATCC 10895]
          Length = 466

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 155/373 (41%), Gaps = 65/373 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+K QE A+  +L +  +      I Q   G+GKT    + M + V+      QA+ +AP
Sbjct: 100 PSKIQERALPLLLHNPPRN----MIAQSQSGTGKTAAFSLTMLSRVDVAVPATQAICLAP 155

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH-RRKALERIAHGQAHIIIGTHALFQD 388
              LA+Q  E I++  + T+I  ++I   +P ++ + KA+       AHII+GT     D
Sbjct: 156 SRELARQTLEVIQEMGKFTKIASQLI---VPDSYEKNKAI------NAHIIVGTPGTVLD 206

Query: 389 -----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
                 IQ  K+   ++DE      +Q L          + +    P    LVL S    
Sbjct: 207 LMRRKMIQLGKVKTFVLDEADNMLDKQGLG------DQCIRVKKFLPKDTQLVLFS---- 256

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK-------- 495
                T   + R+  + V+   N ++  ++R +V +S  K+ +  C     K        
Sbjct: 257 ----ATFDDSVREYARRVVPNANSLE--LQRNEVNVSAIKQLFMDCNDERHKFTVLCDLY 310

Query: 496 ------KESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                     F    +  N L+         ++I+HG +   D++ ++  F+ G  K+LI
Sbjct: 311 GLLTIGSSIIFVQTKQTANMLYTELKREGHQVSILHGDLQSADRDRLIGDFREGRSKVLI 370

Query: 547 ATTVIEVGIDVVDASIII------IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
            T V+  GID+   S+++        N +      +H++ GR GR       I   H   
Sbjct: 371 TTNVLARGIDIPTVSMVVNYDLPMTANGQPDPSTYVHRI-GRTGRFGRTGVAISFIH--- 426

Query: 601 SKNSYTRLSVLKN 613
            K SY  L+ +++
Sbjct: 427 DKKSYETLAAIQS 439


>gi|323529643|ref|YP_004231795.1| RecQ family ATP-dependent DNA helicase [Burkholderia sp. CCGE1001]
 gi|323386645|gb|ADX58735.1| ATP-dependent DNA helicase, RecQ family [Burkholderia sp. CCGE1001]
          Length = 582

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 147/348 (42%), Gaps = 48/348 (13%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILA 334
            QE  I+ +LQ       M        G+GK+L   +    A+   G  ++++P I ++ 
Sbjct: 26  GQEDIIRSVLQHRDTLATM------PTGAGKSLCYQLP---ALHLDGMTLVVSPLIALMK 76

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDS 389
            Q  + +        I   ++   +     R+AL+RIA G + I+  T        F ++
Sbjct: 77  DQADKLLA-----AGIDCTLVNSTLRSRAEREALQRIAAGHSGIVFVTPERLAQPAFIET 131

Query: 390 IQYY---KLILVIVDEQH---RFGVQQRLKLTQKATA------PHVLLMTATPIPRTL-- 435
           ++     ++ LV+VDE H    +G   R    + A A      P VL +TAT   R +  
Sbjct: 132 LRARPDNRVGLVVVDEAHCVSHWGHDFRPAFLEIAAAVKALGEPPVLALTATATQRVIDD 191

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           ++ SL   D  ++      R+ ++  ++ ++         + + ++ ++   +   +   
Sbjct: 192 IVHSLALRD-PRVVRTGTYRENLRYRVVQVSTAGGKDGAARAMAAKREQLSKLVASLAGA 250

Query: 496 K---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  R V   +  L E    S++  HGRM+   +E   + F +G  +L++AT    
Sbjct: 251 GIVYAATVRDVDRIYGWLPEA-GESVSRYHGRMAAGAREEAQEQFMSGATRLMVATNAFG 309

Query: 553 VGIDVVDASIIIIENAEHF----GLAQLHQLRGRVGRGEEISSCILLY 596
           +GID  D   +I     H+     L   +Q  GR GR  E + C+LL+
Sbjct: 310 MGIDKADIRFVI-----HYQIPGSLDAYYQETGRAGRDGEPADCVLLF 352


>gi|219847610|ref|YP_002462043.1| primosomal protein N' [Chloroflexus aggregans DSM 9485]
 gi|219541869|gb|ACL23607.1| primosomal protein N' [Chloroflexus aggregans DSM 9485]
          Length = 835

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 7/141 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           +IP   T +Q +A + I+ D+        +L G  GSGKT V L  +A A+  G QA+++
Sbjct: 273 DIPPPLTAAQRAAYELIVADLEAGAGGRFLLHGITGSGKTEVYLRLVARALRLGRQALVL 332

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALF 386
            P   L  Q    ++++       + ++   +    R  A  R+  G+A I+IG   ALF
Sbjct: 333 VPEIALTTQ---LVRRFAARFGNQLAVLHSGLSDGERYDAWRRLRRGEARIVIGARSALF 389

Query: 387 QDSIQYYKLILVIVDEQHRFG 407
                  +L LVIVDE+H  G
Sbjct: 390 A---PLPELGLVIVDEEHEPG 407


>gi|319896672|ref|YP_004134865.1| primosomal protein n' [Haemophilus influenzae F3031]
 gi|317432174|emb|CBY80525.1| primosomal protein N' [Haemophilus influenzae F3031]
          Length = 730

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/389 (20%), Positives = 157/389 (40%), Gaps = 94/389 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +++G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 222 LLDGVTGSGKTEIYLQYIEEILKSGKQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 277

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
             N+    R    +R   GQ+ I+IGT  ALF    Q+  L  +I+DE+H    +Q+   
Sbjct: 278 HSNLTDTQRLYVWDRARSGQSAIVIGTRSALF---TQFSNLGAIILDEEHDSSYKQQDSW 334

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                   + L QK     VL+ +ATP   ++     G      ++++      ++  +I
Sbjct: 335 RYHARDLAIVLAQKLNIA-VLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVI 393

Query: 464 PINRID-------EVIERLKVVLSEGKKAY------------------WI--CPQIEEKK 496
            +   +        ++ER+K  L +G +                    WI  CP  E+  
Sbjct: 394 DLKNQNIQNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPY 453

Query: 497 ESNFRSVVERFN----------------SLH--------EHFTSSIAII--HGRMSDIDK 530
             +    V R +                S H        E    ++  +  H  ++ ID+
Sbjct: 454 TYHQHQNVLRCHHCGAQKTIPRQCGDCGSTHLVTTGLGTEQLEETLKTLFPHYSVARIDR 513

Query: 531 ESV---------MDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHF 571
           +S          ++  + G  ++LI T ++           V +  VD+++  ++     
Sbjct: 514 DSTARKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNVDSALFSLDFRAEE 573

Query: 572 GLAQLH-QLRGRVGRGEEISSCILLYHPP 599
            LAQL+ Q+ GR GR ++    +L  H P
Sbjct: 574 RLAQLYIQVAGRAGRADKQGEVVLQTHYP 602


>gi|225627424|ref|ZP_03785461.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
 gi|256159665|ref|ZP_05457418.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           ceti M490/95/1]
 gi|256254934|ref|ZP_05460470.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           ceti B1/94]
 gi|260168662|ref|ZP_05755473.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           sp. F5/99]
 gi|261222116|ref|ZP_05936397.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261758136|ref|ZP_06001845.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|265998081|ref|ZP_06110638.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
 gi|225617429|gb|EEH14474.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
 gi|260920700|gb|EEX87353.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261738120|gb|EEY26116.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|262552549|gb|EEZ08539.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
          Length = 435

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 147/346 (42%), Gaps = 61/346 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+    +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE----RKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +  KL+L     +++DE  R        +      P +  +    P  R TL  +
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADR--------MLDMGFIPDIERICKLIPFTRQTLFFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDE-VIERL---------------KVVLSEG 482
           +    +I+K+TE+     P++  +   +   + V +RL                ++ SEG
Sbjct: 186 ATMPPEITKLTEQFL-HSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEG 244

Query: 483 ---KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
              K A   C        +  + V E F SL  H   + A+ HG M    + +++ SFK+
Sbjct: 245 DSLKNAIIFC--------NRKKDVSELFRSLTRHEFDAGAL-HGDMDQRARMAMLSSFKD 295

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR
Sbjct: 296 GKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGR 340


>gi|319783363|ref|YP_004142839.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169251|gb|ADV12789.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 474

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 143/330 (43%), Gaps = 43/330 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT    + + + + A G        +A+I+AP   LA Q  + IK   +   +   
Sbjct: 62  TGSGKTAAFALPILSKIIALGTKRRPKTARALILAPTRELAVQIEDTIKILAKGAHVSTA 121

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
           ++ G +    R   ++++A G   I+I T     D ++   L+L     +++DE  R   
Sbjct: 122 LVLGGV---SRFSQVKKVAPG-VDILIATPGRLTDLVREGDLMLADTKWLVLDEGDRMLD 177

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G    +K   KATAP    +L +AT +P  +   + G +           + PI+  + 
Sbjct: 178 MGFINDVKRIAKATAPDRQTVLFSAT-MPNEIAELAKGLL-----------KNPIRVEVA 225

Query: 464 PINRID-EVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSS 517
           P +    E+++ +    ++ K+        +E  +S       +   +R     E     
Sbjct: 226 PQSTAAAEIVQGVVFARTKQKRQVLSTMLADETMKSVIIFSRTKHGADRVTKDLERDGFK 285

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            A+IHG  S   ++  ++ F++G+ ++L+AT +   GIDV   S ++  +      + +H
Sbjct: 286 AAVIHGNKSQNARQKALNDFRDGSVRILVATDIAARGIDVPGISHVVNFDLPDEAESYVH 345

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           ++ GR GR       I L  P  S+NS  R
Sbjct: 346 RI-GRTGRNGMDGIAITLCDP--SENSKLR 372


>gi|317498701|ref|ZP_07956993.1| primosomal protein N [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894043|gb|EFV16233.1| primosomal protein N [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 741

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 97/216 (44%), Gaps = 25/216 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
            + Q+  I +  +D  +++    +L G  GSGKT V L A+   ++ G QA+++ P I +
Sbjct: 209 NEQQQELIDEFREDFLREDHKTYLLHGITGSGKTEVYLAAIEEVIKQGKQAIVLIPEIAL 268

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F K++ +     V I+   + +  R     R   G   +IIG   ALF   + 
Sbjct: 269 TYQTVTRFTKRFGER----VSILNSRLSKGERYDQWLRAQRGDVDVIIGPRSALF---VP 321

Query: 392 YYKLILVIVDEQHR--FGVQQRLKLTQKATA--------PHVLLMTATPIPRTLVLTSLG 441
           +  L L+++DE+H   +  +Q  K   +  A          V+L +ATP   +      G
Sbjct: 322 FSNLGLIVIDEEHEGSYKSEQTPKYHAREVAIKKAQMEGASVILGSATPSVESYKHALDG 381

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              + ++T++       K  ++P   I+++ E LK 
Sbjct: 382 TYRLWELTKRA------KEAVLPQVYIEDLREELKA 411


>gi|291446333|ref|ZP_06585723.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291349280|gb|EFE76184.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 507

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 129/318 (40%), Gaps = 33/318 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  +   A+++ P   LAQQ  + +  Y ++ ++ +
Sbjct: 176 RGRTGSGKTLAFGLALLARTAGRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRL 235

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFG 407
             + G M    +  AL     G A +++ T    +D I+       ++ + ++DE     
Sbjct: 236 ATVVGGMSIGRQASALR----GGAEVVVATPGRLKDLIERRDCKLDRVTVTVLDEAD--- 288

Query: 408 VQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                ++      P V  LL    P  + ++ ++  D ++  +      + P+   + P 
Sbjct: 289 -----QMADMGFMPQVTELLDQVNPDGQRMLFSATLDRNVDLLVRTYL-KDPVVHSVDPA 342

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAI 520
                 +E   V+  +G   Y    +I  +        + +  V++      H     A 
Sbjct: 343 AGAVTTMEH-HVLYVQGADKYATTTEIAARDGRVIMFLDTKHAVDKLTDHLLHSGVRAAA 401

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG  S   +   +D FK G   +L+AT V   GI V +  +++  +        LH+  
Sbjct: 402 LHGGKSQPQRTRTLDRFKTGQVTVLVATNVAARGIHVDNLDLVVNVDPPTDHKDYLHR-G 460

Query: 581 GRVGRGEEISSCILLYHP 598
           GR  R  E  S + L  P
Sbjct: 461 GRTARAGESGSVVTLVLP 478


>gi|294101359|ref|YP_003553217.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
           DSM 12261]
 gi|293616339|gb|ADE56493.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
           DSM 12261]
          Length = 555

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 180/434 (41%), Gaps = 78/434 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I++   GSGKTL  L+ +   + AG    + +I++P   L+QQ ++  K +     +   
Sbjct: 45  IVRAKTGSGKTLAFLLPLLQKITAGERESKVLILSPTRELSQQIWKEAKWFGNYINVSAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHR--- 405
            + G M  + + ++L     G A ++ GT     D I+   L      +V++DE      
Sbjct: 105 SLVGGMDMSQQIRSLR---DGSA-VVTGTPGRVLDHIRRGTLDTSGIKIVVLDEGDHMLD 160

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPI-- 458
            G ++ L+  L        V L +AT +P   + L    L       +TE+    + I  
Sbjct: 161 LGFKEELEAILDSLPNCQRVWLFSAT-MPAEIKNLAKRYLKTPVFISLTEEGEAHEDITH 219

Query: 459 KTVIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +  ++P    +E +  + V+L E   +A   C    E  E   R   E F ++       
Sbjct: 220 EVYLVPTRHKEEGL--INVLLWEKPSRAIVFCHTRAETVELTRRLHDENFQAM------- 270

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGL 573
              +HG MS  ++   +  F++G   LL+AT V   G+DV   S +I     +N E F  
Sbjct: 271 --CLHGEMSQRERNMALSQFRSGRTPLLVATNVAARGLDVEGVSHVIQMGLPDNRETF-- 326

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKN--SYTRLSVL----KNTEDGFLIAEEDLKQ 627
             +H+  GR GR       +L+  P  +    S  + S +    KN  D      +D+++
Sbjct: 327 --VHR-SGRTGRAGHEGRNLLVLSPKEATGFKSMVKTSTIPITWKNVPD-----PKDIRK 378

Query: 628 RK----EGEILGIKQSGMPKFLIAQPELHDSLLEI---------------ARKDAKHILT 668
           ++    E  +   +    P+ L    E  DSLLE                +RK+A + LT
Sbjct: 379 KQRISYEERVFAAEHYETPENL----EWADSLLECNESRAMIARLLGLLFSRKNAGYELT 434

Query: 669 QDPDLTSVRGQSIR 682
            D +    RG++ R
Sbjct: 435 ADLEQDLKRGRTPR 448


>gi|281183435|gb|ADA53586.1| RE22480p [Drosophila melanogaster]
          Length = 403

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 121/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q    +    +  ++   
Sbjct: 71  IAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSH 130

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-------QYYKL-ILVIVDEQHR 405
              G      R  A  RI     H+++GT     D I       QY KL +L   DE   
Sbjct: 131 ACIGGT--NVREDA--RILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLS 186

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + +++   K   P   V+L++AT  P  L ++            +   R P+    I
Sbjct: 187 RGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVS------------RCFMRDPVS---I 231

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      K+  W    + +  ++          N R  V++       
Sbjct: 232 LVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSI 291

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   D+E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 292 HNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 342


>gi|194856991|ref|XP_001968873.1| GG25110 [Drosophila erecta]
 gi|190660740|gb|EDV57932.1| GG25110 [Drosophila erecta]
          Length = 389

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 122/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q    +    +  ++   
Sbjct: 57  IAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSH 116

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-------QYYKL-ILVIVDEQHR 405
              G      R  A  RI     H+++GT     D I       QY KL +L   DE   
Sbjct: 117 ACIGGTNV--REDA--RILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLS 172

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + +++   K   P   V+L++AT  P  L ++            +   R+P+    I
Sbjct: 173 RGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVS------------RCFMREPVS---I 217

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      K+  W    + +  ++          N R  V++       
Sbjct: 218 LVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSI 277

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   D+E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 278 HNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 328


>gi|163745812|ref|ZP_02153171.1| primosome assembly protein PriA [Oceanibulbus indolifex HEL-45]
 gi|161380557|gb|EDQ04967.1| primosome assembly protein PriA [Oceanibulbus indolifex HEL-45]
          Length = 745

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 27/185 (14%)

Query: 267 RNIPF----------SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           R++PF          + T+ Q SA   + + +  +     +L+G  GSGKT V L A+AA
Sbjct: 195 RDLPFRRLDPSLPGKALTEDQASAAAVLREGIKAETYGTTLLRGVTGSGKTEVYLEAVAA 254

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           A+E+G QA+++ P   L +Q   F+ +  +            +    RR+    +  G A
Sbjct: 255 AIESGRQALVLLPEIALTEQ---FLDRVEERFGAKPAEWHSGVTMTERRRIWRMVGEGNA 311

Query: 377 HIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------TAPHVLL 425
            ++IG   ALF   + +  L L++VDE+H    +Q   +   A              V+L
Sbjct: 312 QLVIGARSALF---LPFQSLGLIVVDEEHDTSYKQEDGVLYNARDMAVLRASICGAQVVL 368

Query: 426 MTATP 430
            +ATP
Sbjct: 369 ASATP 373


>gi|145323964|ref|NP_001077571.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|332191920|gb|AEE30041.1| DEAD-box ATP-dependent RNA helicase 42 [Arabidopsis thaliana]
          Length = 828

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 155/371 (41%), Gaps = 58/371 (15%)

Query: 302 VGSGKTLVALIAM------AAAVEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++ M         VEAG   +  +MAP   L QQ +  I+K+++   I   
Sbjct: 237 TGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCV 296

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G    A +   L+R       I++ T     D +           ++  +++DE  R
Sbjct: 297 PVYGGSGVAQQISELKR----GTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADR 352

Query: 406 F---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKP-----AGR 455
               G + ++    +   P    +L +AT  PR +   +       K+  KP      GR
Sbjct: 353 MFDMGFEPQITRIIQNIRPERQTVLFSAT-FPRQVETLA------RKVLNKPVEIQVGGR 405

Query: 456 KPIKTVIIPI-------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             +   I  +       +R   ++E L     +GK   ++  Q +EK ++ +R +++   
Sbjct: 406 SVVNKDITQLVEVRPESDRFLRLLELLGEWSEKGKILVFV--QSQEKCDALYRDMIKS-- 461

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                 +     +HG     D+ES +  FKN  C LLIAT+V   G+DV +  +++  +A
Sbjct: 462 ------SYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDA 515

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
            +     +H++ GR GR       +       +K +   +  L+ +E       +DLK  
Sbjct: 516 PNHYEDYVHRV-GRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQ---PVPDDLKAL 571

Query: 629 KEGEILGIKQS 639
            +G ++ +KQ 
Sbjct: 572 ADGFMVKVKQG 582


>gi|148224339|ref|NP_001082033.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Xenopus laevis]
 gi|10764780|gb|AAG22818.1|AF302422_1 RNA helicase II/Gu [Xenopus laevis]
          Length = 800

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 144/331 (43%), Gaps = 42/331 (12%)

Query: 297 ILQGDVGSGKT------LVALIAMAAAVEAGGQA---VIMAPIGILAQQHYEFIKKYTQN 347
           ++Q   G+GKT      LV  ++      A G+A   +I+ P   LA Q    ++  T+ 
Sbjct: 262 VVQARTGTGKTFSFGIPLVERLSEDQQPLARGRAPRVIILTPTRELAIQITNELRSMTK- 320

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +  A++         ++GT    +D +Q Y+L L     V++DE
Sbjct: 321 -KLKVACFYGGTPYQQQVFAIK----DGIDFLVGTPGRIRDLVQNYRLDLTALKHVVLDE 375

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIP----RTLVLTSLGDIDISKITEKPAGRKPI 458
                V     +        +L +   P P    +TL+ ++     +  + +K   RK  
Sbjct: 376 -----VDMMFDVGFSEQVEEILSVRYKPDPEENPQTLLFSATCPDWMYNVAKKYM-RKQY 429

Query: 459 KTVIIPINRIDE---VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           + V +  +R  +    +E L +  +  +KA  +   ++    S+ ++++   + L  H  
Sbjct: 430 EKVDLVGHRSQKAAITVEHLAIECNRSQKAAVLGDIVQVYSGSHGKTIIFCDSKLQAHEL 489

Query: 516 S--------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           S        S   +HG +   ++E V+  F+ GT ++LIAT V   G+D+ +  ++++ +
Sbjct: 490 STNCGSLKQSAKPLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYS 549

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           A     A +H+  GR GR      CI LY P
Sbjct: 550 APKEADAYVHR-SGRTGRAGRTGVCISLYEP 579


>gi|331266730|ref|YP_004326360.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus oralis Uo5]
 gi|326683402|emb|CBZ01020.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus oralis Uo5]
          Length = 447

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 149/345 (43%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +PT+ QE  I  +L       R L + +   GSGKT   L+ +   ++      QAVI A
Sbjct: 23  TPTEVQEKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDETSDSVQAVITA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           P   LA Q Y+  ++   ++ + V ++   G   +A   + +E++A  Q HI+IGT    
Sbjct: 77  PSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKA---RQIEKLASNQPHIVIGTPGRI 133

Query: 387 QDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTATPIPRTLV 436
            D ++      +K    ++DE         L+   K           ++ +AT IP+ L 
Sbjct: 134 YDLVKSGDLAIHKAKTFVIDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSAT-IPQKLQ 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   + K    P   K IKT  +  + ID  +   K    +  + Y +   ++   
Sbjct: 193 PF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-RDKNAQIYQLTQLMQPYL 244

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +   R + LH + T+    +A IHG ++  +++ +M+  KN   + ++AT +   
Sbjct: 245 AMIFVNTKTRADELHAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIVATDLAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 305 GIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|315612843|ref|ZP_07887754.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314953|gb|EFU62994.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
          Length = 447

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 149/345 (43%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +PT+ QE  I  +L       R L + +   GSGKT   L+ +   ++      QAVI A
Sbjct: 23  TPTEVQEKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDETSDSVQAVITA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           P   LA Q Y+  ++   ++ + V ++   G   +A   + +E++A  Q HI+IGT    
Sbjct: 77  PSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKA---RQIEKLASNQPHIVIGTPGRI 133

Query: 387 QDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTATPIPRTLV 436
            D ++   L +      ++DE         L+   K           ++ +AT IP+ L 
Sbjct: 134 YDLVKSGDLAIHKAKTFVIDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSAT-IPQKLQ 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   + K    P   K IKT  +  + ID  +   K    +  + Y +   ++   
Sbjct: 193 PF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-RDKNAQIYQLTQLMQPYL 244

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +   R + LH + T+    +A IHG ++  +++ +M+  KN   + ++AT +   
Sbjct: 245 AMIFVNTKTRADELHAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIVATDLAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 305 GIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|145628692|ref|ZP_01784492.1| primosome assembly protein PriA [Haemophilus influenzae 22.1-21]
 gi|144979162|gb|EDJ88848.1| primosome assembly protein PriA [Haemophilus influenzae 22.1-21]
          Length = 677

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/389 (20%), Positives = 157/389 (40%), Gaps = 94/389 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +++G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 169 LLDGVTGSGKTEIYLQYIEEILKSGKQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 224

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
             N+    R    +R   GQ+ I+IGT  ALF    Q+  L  +I+DE+H    +Q+   
Sbjct: 225 HSNLTDTQRLYVWDRARSGQSAIVIGTRSALF---TQFSNLGAIILDEEHDSSYKQQDSW 281

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                   + L QK     VL+ +ATP   ++     G      ++++      ++  +I
Sbjct: 282 RYHARDLAIVLAQKLNIA-VLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVI 340

Query: 464 PINRID-------EVIERLKVVLSEGKKAY------------------WI--CPQIEEKK 496
            +   +        ++ER+K  L +G +                    WI  CP  E+  
Sbjct: 341 DLKNQNIQNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPY 400

Query: 497 ESNFRSVVERFN----------------SLH--------EHFTSSIAII--HGRMSDIDK 530
             +    V R +                S H        E    ++  +  H  ++ ID+
Sbjct: 401 TYHQHQNVLRCHHCGAQKTIPHQCGDCGSTHLVTTGLGTEQLEETLKTLFPHYSVARIDR 460

Query: 531 ESV---------MDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHF 571
           +S          ++  + G  ++LI T ++           V +  VD+++  ++     
Sbjct: 461 DSTARKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNVDSALFSLDFRAEE 520

Query: 572 GLAQLH-QLRGRVGRGEEISSCILLYHPP 599
            LAQL+ Q+ GR GR ++    +L  H P
Sbjct: 521 RLAQLYIQVAGRAGRADKRGEVVLQTHYP 549


>gi|306840076|ref|ZP_07472862.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
 gi|306404804|gb|EFM61097.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
          Length = 482

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 147/347 (42%), Gaps = 61/347 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+    +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE----RKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +  KL+L     +++DE  R        +      P +  +    P  R TL  +
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADR--------MLDMGFIPDIERICKLIPFTRQTLFFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDE-VIERL---------------KVVLSEG 482
           +    +I+K+TE+     P++  +   +   + V +RL                ++ SEG
Sbjct: 186 ATMPPEITKLTEQFL-HSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEG 244

Query: 483 ---KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
              K A   C        +  + V E F SL  H   + A+ HG M    + +++ SFK+
Sbjct: 245 DSLKNAIIFC--------NRKKDVSELFRSLTRHEFDAGAL-HGDMDQRARMAMLSSFKD 295

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR 
Sbjct: 296 GKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRA 341


>gi|148255365|ref|YP_001239950.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
 gi|146407538|gb|ABQ36044.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
          Length = 478

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 142/356 (39%), Gaps = 46/356 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI  +L     +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 23  TPTPIQEQAIPHVLA----RRDVLGIAQ--TGTGKTAAFVLPMLTILEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   +Y    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDTKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIP- 432
             D  +   L+L     +++DE  R         +++  KL         L  TAT  P 
Sbjct: 133 LLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTR--QTLFFTATMPPE 190

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYW 487
            R +  T L +    +++        +  + +P  R      EV+ +L     + K A  
Sbjct: 191 IRRVTETFLHNPQKVEVSRPATTAVTVTQLQVPGGREAHQKREVLRKLLREAKDLKNAII 250

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C        +  R V     SL +H   S+  +HG M    + + +D F+ G   LL+A
Sbjct: 251 FC--------NRKRDVAILHKSLQKH-GFSVCALHGDMDQSARMAALDQFRKGELPLLVA 301

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           + V   G+D+ + S +   +  H     +H++ GR GR     + I +  P   K+
Sbjct: 302 SDVAARGLDIPEVSHVFNFDVPHHSDDYVHRI-GRTGRAGRTGTAISIVSPADQKS 356


>gi|320589963|gb|EFX02419.1| RNA helicase [Grosmannia clavigera kw1407]
          Length = 537

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 144/344 (41%), Gaps = 49/344 (14%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +     + A        G   +++AP   LA Q  + I K+ ++++I 
Sbjct: 161 AETGSGKTLTYCLPSIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIR 220

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR- 405
              + G +P+  + + L R       + I T     D ++       ++  +++DE  R 
Sbjct: 221 NTCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRM 276

Query: 406 ----FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KI 448
               F  Q R  L+Q           AT P  +   A       +  ++G +D+S   +I
Sbjct: 277 LDMGFEPQIRKILSQIRPDRQTLMWSATWPKEVRNLAADFLTDFIQVNIGSLDLSANHRI 336

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           T+       I  V+   ++ D +++ L+ V+ + +K   +      K+      V +   
Sbjct: 337 TQ-------IVEVVSEGDKRDRMLKHLEKVMDDKEKENKVLIFTGTKR------VADDIT 383

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L          IHG     +++ V+D FK G   +++AT V   GIDV + + +I  + 
Sbjct: 384 RLLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVINYDY 443

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR GR     + I L+    +K +   +SVL+
Sbjct: 444 PNNSEDYIHRI-GRTGRAGANGTAITLFTTDNAKQARDLVSVLQ 486


>gi|270290969|ref|ZP_06197192.1| ATP-dependent RNA helicase YqfR [Pediococcus acidilactici 7_4]
 gi|270280365|gb|EFA26200.1| ATP-dependent RNA helicase YqfR [Pediococcus acidilactici 7_4]
          Length = 453

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 152/350 (43%), Gaps = 49/350 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT  QE  I  I +  S       + Q   GSGKT   L+ +   ++      QAVI  P
Sbjct: 25  PTPVQERVIPLIAEGQSV------VGQSQTGSGKTHAFLLPIFNQIDPAKNAIQAVITTP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGN-MPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q YE  K+    ++  +EI  GN +    +++ + ++ H Q  I+IGT     D
Sbjct: 79  SRELAYQIYEAAKQLAAASETPIEI--GNYVGGTDKKRQIAKLEHHQPAIVIGTPGRVLD 136

Query: 389 SIQ-----YYKLILVIVDEQHRFGVQQRLKLTQK--ATAP---HVLLMTATPIPRTLVLT 438
            +Q     + ++  +++DE         L    +  A+ P    +L+ +AT IP+ L   
Sbjct: 137 LLQARALNFRQVRYLVIDEADMTLDMGFLSAVDQIAASMPENLQMLVFSAT-IPQQL--- 192

Query: 439 SLGDIDISKITEKPAGRK-PIKTVIIPINRIDEVIERLKVVLSEGKKA--YWICPQIEEK 495
              ++ + K  E PA  + P+ T I P   I  ++   K   S+ K    Y +    E  
Sbjct: 193 ---NVFLQKYMEHPAIEEIPVATTISPT--IKNILISTK---SQDKNNLIYQLLTMGEPY 244

Query: 496 KESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F +  ER + L  +  S    +A IHG +   +++ +M        + ++AT +  
Sbjct: 245 LALVFTNTKERADELTNYLKSQGLPVAKIHGGIPPRERKRIMKDIHRLRYQYVVATDLAA 304

Query: 553 VGIDVVDASIIIIE----NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            GID+   S++I +    + E F    +H++ GR GR     + I LY P
Sbjct: 305 RGIDIEGVSLVINDDIPTDLEFF----IHRV-GRTGRNGLPGTAITLYMP 349


>gi|188996905|ref|YP_001931156.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931972|gb|ACD66602.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 405

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 156/358 (43%), Gaps = 58/358 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAP 329
           PT+ QE AI  +   M+ K+    + Q   G+GKT    V ++      +   QA+I+ P
Sbjct: 29  PTEIQEKAIPAV---MTGKDL---VAQAQTGTGKTAAFGVPIVEKVNPKQKKVQALILVP 82

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + IK+  +N ++    + G    +H+   L++   G   +++GT    +D 
Sbjct: 83  TRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQINFLKK---GSDVVVVGTPGRVRDL 139

Query: 390 IQYYKLIL-----VIVDEQHR---------------FGVQQRLKLTQKATAPHVLLMTAT 429
           ++   L L      ++DE  R               +  + R  L   AT P  +L  A 
Sbjct: 140 LERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQNLLFSATMPKEILDLAE 199

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                       + +  ++       + IK +I  +N  D+  ++L  VLS+ + A  + 
Sbjct: 200 EFLNE-------NYETIRVKPDEVTVEKIKQIIYRVNPRDK-FKKLTEVLSQNE-AEKVI 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
              + K E++   + ER N   E F +S   IHG  S   +E+V+ +F+ G  K+L+AT 
Sbjct: 251 IFTQTKIEAD--ELAERLN--EEGFNASA--IHGDFSQKKRETVLHNFRTGKLKILVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVGRGEEISSCILLYHPPLSK 602
           V   G+D+    ++I     ++GL +     +H++ GR GR     + I +  P   K
Sbjct: 305 VAARGLDIKGVDLVI-----NYGLPRDAESYIHRI-GRTGRAGREGTAISIMTPSEDK 356


>gi|153009579|ref|YP_001370794.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561467|gb|ABS14965.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 498

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 152/360 (42%), Gaps = 55/360 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+    +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 38  APTPIQAGAIPPALE----RKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 91

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 92  ILEPTRELAAQVEENFTKYGVNHRLNVALLIGGVSFDEQERKLER----GADVLIATPGR 147

Query: 386 FQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPR 433
             D  +  KL+L     +++DE  R         +++  KL         L  +AT  P 
Sbjct: 148 LLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTR--QTLFFSATMPPE 205

Query: 434 TLVLT-----SLGDIDISKITEKPAGRKPIKTVIIPINRID---EVIERLKVVLSEG--- 482
              LT     S   ++++K +   +  K +   ++  ++ D     + R  +V +EG   
Sbjct: 206 ITKLTEQFLHSPTRVEVAKAS---STAKTVTQRLVKSSKKDWDKRAVLR-DLVRAEGDTL 261

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           K A   C        +  + V E F SL  H  ++ A +HG M    + +++ +FK G  
Sbjct: 262 KNAIIFC--------NRKKDVSELFRSLTRHEFNAGA-LHGDMDQRARMTMLANFKEGKL 312

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           +LL+A+ V   G+D+ D S +   +        +H++ GR GR         +  P  +K
Sbjct: 313 QLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRI-GRTGRAGRSGKAFTIVTPSDTK 371


>gi|300362071|ref|ZP_07058248.1| ATP-dependent RNA helicase [Lactobacillus gasseri JV-V03]
 gi|300354690|gb|EFJ70561.1| ATP-dependent RNA helicase [Lactobacillus gasseri JV-V03]
          Length = 427

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 126/305 (41%), Gaps = 24/305 (7%)

Query: 302 VGSGKTLV-ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G+GKTL   L  M    + GG+ VI+ P   LA Q    +  Y +   +    + G   
Sbjct: 57  TGTGKTLAYGLPVMERVADIGGRGVILEPTTELAIQTRNNLLHYAKALGLKTIALVG--- 113

Query: 361 QAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
             +R++ LER+   +  III T   F     ++ I+Y  +  +++DE        +L L 
Sbjct: 114 AGNRKRQLERLKKEKPEIIIATPGRFFDFLSENRIKYQDINALVIDEADDILEFAKLDLL 173

Query: 416 QK-----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
                  ++   +LL  A+    T    +L +     +  +P  +  +K   + ++  +E
Sbjct: 174 SSLGQNLSSTAQILLFGASESEVTKNAENLFNHTFLLVDVRPEQKSEVKHYFLQVS--NE 231

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
              +    L++  K   I     E  E+       RF  +  H  +  A++    S  ++
Sbjct: 232 YKMQFLQRLAKLDKFKGIL--FFESSETEM-----RFARIFNHSKTKFAVLSNETSKQNR 284

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E ++ +F+ G  K L AT +   G+D+ D S +I           LH+  GR GR  +  
Sbjct: 285 EKLLSNFRAGRIKFLFATDLAARGLDLPDVSYVINFEIPSEVNTYLHR-SGRTGRMNKSG 343

Query: 591 SCILL 595
           + + L
Sbjct: 344 TVVTL 348


>gi|212635941|ref|YP_002312466.1| DEAD box family ATP-dependent RNA helicase [Shewanella
           piezotolerans WP3]
 gi|212557425|gb|ACJ29879.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
           piezotolerans WP3]
          Length = 447

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 151/380 (39%), Gaps = 64/380 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL-------IAMAAAVEAGGQA 324
           +PT+ QE AI   L   + K+ M        GSGKTL  L       I+  A  +   +A
Sbjct: 23  TPTEIQEQAIPIAL---AGKDLMA---SSKTGSGKTLAFLLPAMQRMISCKALSKRDPRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI+ P   LA Q Y  ++    NTQ     I G      + KAL R      H ++ T  
Sbjct: 77  VILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKALAR----DPHFVVATPG 132

Query: 385 LFQDSIQYYKL-----ILVIVDEQHR---FGVQQRLKLTQKATAPH----VLLMTATPIP 432
              D ++ + L      L+I DE  R    G  ++LK    A A H     L+ +AT   
Sbjct: 133 RLADHLKQHHLHLNGLELLIFDEADRMLDLGFAEQLKQINNA-ADHKRRQTLMFSAT--- 188

Query: 433 RTLVLTSLGDID--ISKITEKP------AGR---KPIKTVIIPINRIDEVIERLKVVLSE 481
                   GD+D   +++ + P      AG    K I   I   + +D     L  +L +
Sbjct: 189 -----LDHGDVDEIAAELLKTPEHVAIGAGNLEHKDITQRIFLCDHLDHKEALLSRILKD 243

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
            ++   I           F +  +  + L +         A + G +    +  +MD F 
Sbjct: 244 EQQKQIII----------FTATRQDTDRLAKKLADDGFKTASLSGELKQSARNQIMDEFS 293

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++L+ T V   G+D+++ S++I  +   F    +H++ GR GR       + L  P
Sbjct: 294 RGLQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDAVSLVGP 352

Query: 599 PLSKNSYTRLSVLKNTEDGF 618
               N +T++    N +  F
Sbjct: 353 KDWVN-FTQVQTFLNKQFAF 371


>gi|150016694|ref|YP_001308948.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903159|gb|ABR33992.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 402

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 159/360 (44%), Gaps = 60/360 (16%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIIT 356
            GSGKTL  L+ +   ++      Q +I+AP   LA+Q  + IK   +N+   I    I 
Sbjct: 49  TGSGKTLAYLLPLFHKIDTSKREMQGLILAPTHELAKQIEDQIKLLAENSSFPITSLSII 108

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRFGVQQR 411
           G++   ++ K L+ I   + HII+G+     D I+  K+       +++DE       +R
Sbjct: 109 GDVNINNQIKKLKEI---KPHIIVGSTGRILDLIRKKKITAHTIKTIVIDEGDNLLDPKR 165

Query: 412 LKLTQ---KATAP--HVLLMTATPIPRTL--VLTSLGDIDISKITEKPAGRKPIKTVIIP 464
             +T+   K+T     ++L +A+  P TL    + + +  I K  +KP     I+ + I 
Sbjct: 166 SNVTKDIVKSTMRDRQLMLFSASIKPETLETAKSLMKEPIIIKSEDKPLINPNIEHMFIL 225

Query: 465 INRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
             R D  E + ++ V +   K   ++         +N   +      L+ H     A+  
Sbjct: 226 CERRDKFETLRKVLVAVKPEKAIIFV---------NNNEDIELTTAKLNYHSKDCFAMT- 275

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQLH 577
           G++S  D++  ++SF+ G  K+L+++ V   G+DV D     I +  H  L       LH
Sbjct: 276 GKISKEDRKLAIESFRTGKIKILVSSDVTARGLDVAD-----ITHVFHLDLPLKLNEYLH 330

Query: 578 QLRGRVGRGEE--ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           +  GR  RG     S CIL         +  +L+++K  E  F I      Q KE ++ G
Sbjct: 331 R-SGRTARGNAHGTSICIL---------TVQQLNIIKKYEREFNI------QFKEKKVFG 374


>gi|328771766|gb|EGF81805.1| hypothetical protein BATDEDRAFT_16042 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 584

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 105/460 (22%), Positives = 183/460 (39%), Gaps = 89/460 (19%)

Query: 207 NIIHNPRKAKDF-------EWTSPARERLAYDELLAGQIALLLMRKQ----FKKEIGI-- 253
           NI+ + R A +        E  S    R+A+DE    +  L  M+ +    FK++  I  
Sbjct: 92  NIVQDRRSAAELDRAKYLIELQSLKDRRVAFDERHWSEKKLSEMKDRDWRIFKEDFSIST 151

Query: 254 -------PINV--EGKIAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQG 300
                  P+    E ++++ IL  I       PT  Q  AI      M  +NR + I   
Sbjct: 152 KGGNIPNPLRTWDECELSETILGAISRIGYKEPTPIQRQAIP-----MGLQNRDI-IGIA 205

Query: 301 DVGSGKTLVALIAMAAAV-----------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           + GSGKT   +I M   +             G  A+I+AP   LAQQ      K+ +   
Sbjct: 206 ETGSGKTASFVIPMLKFITEMPPLTEINSSQGPYALILAPTRELAQQIESETSKFAREMG 265

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
            I   I G     H  +         AHI+I T    +D ++   L+L     V++DE  
Sbjct: 266 FICVSIVG----GHAVEGQAFNLRNGAHIVIATPGRLRDCLEQRILVLSQCTYVVMDEAD 321

Query: 405 RF---GVQQRLKLTQKAT-----------APHVLLM-----TATPIPRTLVLTSLGDIDI 445
           R    G +  LK    A            + +V L+       TP  +T++ ++   + +
Sbjct: 322 RMVDMGFEPDLKFILDAMPVSNIKPDSDESENVQLLRELTGKVTPFRQTVMFSATMPVAV 381

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------- 498
            ++ +    R    T+ I    +D + +R++++  +G+K   +   +  ++         
Sbjct: 382 ERLAKAYLRRPATVTIGIAGQVVDRIEQRVEMINDDGRKLSRLQEILTSRQFEPPMIVFV 441

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           N +   E      +        +HG  S   +E+ +   K GT  +L+AT V   GIDV 
Sbjct: 442 NQKKGCEVIARALDRLGLKSTTLHGGKSQEQREASLLGLKQGTKDILVATDVAGRGIDVK 501

Query: 559 DASIIIIENAEHFGLAQ-----LHQLRGRVGRGEEISSCI 593
           + S++I     +F +A+      H++ GR GR  +  + I
Sbjct: 502 NVSVVI-----NFDMAKSIEDYTHRI-GRTGRAGKKGTAI 535


>gi|167768543|ref|ZP_02440596.1| hypothetical protein CLOSS21_03102 [Clostridium sp. SS2/1]
 gi|167710067|gb|EDS20646.1| hypothetical protein CLOSS21_03102 [Clostridium sp. SS2/1]
 gi|291560505|emb|CBL39305.1| replication restart DNA helicase PriA [butyrate-producing bacterium
           SSC/2]
          Length = 741

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 97/216 (44%), Gaps = 25/216 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
            + Q+  I +  +D  +++    +L G  GSGKT V L A+   ++ G QA+++ P I +
Sbjct: 209 NEQQQELIDEFREDFLREDHKTYLLHGITGSGKTEVYLAAIEEVIKQGKQAIVLIPEIAL 268

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F K++ +     V I+   + +  R     R   G   +IIG   ALF   + 
Sbjct: 269 TYQTVTRFTKRFGER----VSILNSRLSKGERYDQWLRAQRGDVDVIIGPRSALF---VP 321

Query: 392 YYKLILVIVDEQHR--FGVQQRLKLTQKATA--------PHVLLMTATPIPRTLVLTSLG 441
           +  L L+++DE+H   +  +Q  K   +  A          V+L +ATP   +      G
Sbjct: 322 FTNLGLIVIDEEHEGSYKSEQTPKYHAREVAIKKAQMEGASVILGSATPSVESYKHALDG 381

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              + ++T++       K  ++P   I+++ E LK 
Sbjct: 382 TYRLWELTKRA------KEAVLPQVYIEDLREELKA 411


>gi|162448970|ref|YP_001611337.1| ATP-independent RNA helicase [Sorangium cellulosum 'So ce 56']
 gi|161159552|emb|CAN90857.1| ATP-independent RNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 624

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 137/347 (39%), Gaps = 40/347 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVI 326
           PT  Q  AI  +L       R L + Q   G+GKT    + +   +E GG      +A++
Sbjct: 31  PTPIQREAIPHLL-----TGRDL-LGQAATGTGKTAAFALPLLQRLEIGGEPPRLPEALV 84

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH------GQAHIII 380
           + P   LA Q  E + +Y +   + V  + G  P   + +AL R  H      G+    I
Sbjct: 85  LVPTRELAMQVAEAMHRYGRRLGVQVLSVYGGQPFGQQLRALRRGVHVVVATPGRTLDHI 144

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
           G   L  D I+   ++L   DE    G  + L+  L+    A   +L +AT  PR   + 
Sbjct: 145 GRGTLALDGIR--TVVLDEADEMLDMGFAEALEEILSATPGARQTVLFSATLPPRIAAIA 202

Query: 439 S--LGDIDISKITEKPAGRKPIKTV-----IIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L +    KI  + A    +  V     I+P       + R+ + + +   A   C  
Sbjct: 203 GRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRAHKSAALTRV-LDMEDPSSAILFC-- 259

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    R+ V+               +HG  S   ++ VM  F+ GT +LL+AT V 
Sbjct: 260 -------RTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRAGTAELLVATDVA 312

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             G+D+   S +I  +        +H++ GR GR     + I L  P
Sbjct: 313 ARGLDIEHVSHVINYDVPCAPEVYVHRI-GRTGRAGREGAAITLVEP 358


>gi|119475746|ref|ZP_01616099.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium
           HTCC2143]
 gi|119451949|gb|EAW33182.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium
           HTCC2143]
          Length = 451

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 162/369 (43%), Gaps = 49/369 (13%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---- 318
           K L  + FS  T+ Q  AI + L     K R L ++    GSGKT   L+ +   +    
Sbjct: 15  KALDKLGFSEATEVQAQAIPEAL-----KRRDL-MVSAQTGSGKTAAFLLPILHQILTEE 68

Query: 319 --EAGGQAVIMAPIGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
              +G + +I+ P   LA   Q+++E +  +T    I   +I G     H+   L +   
Sbjct: 69  VSTSGTRVLILLPTRELALQTQKNFEMLAAFTY---IKSGLIIGGEAFKHQVATLRK--- 122

Query: 374 GQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               ++I T     D I+     + +L ++++DE  R      L +   A   + +  + 
Sbjct: 123 -DPEVLIATPGRLVDHIEKGTPDFRQLEVLVLDEADRM-----LDMG-FAIDMNTIASSC 175

Query: 429 TPIPRTLVLT-SLGDIDISKITEKPAGRKPIKTVI-IPINRIDEVIERLKVVLSEGKKAY 486
            P  + L+ + SL    + KI++  + R P+   +  P ++  ++ ++L +  +   K  
Sbjct: 176 NPERQNLLFSASLKHEGLGKISK--SFRDPVAIAVGSPDHQHQDICQQLVLADTIKHKEK 233

Query: 487 WICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +   I+E++        N R   ++ + L  +    +  IHG +S  D++ VM+ F+ G
Sbjct: 234 LVEALIDEEQAQKTLVFCNTRVQCQQLSHLLRYKKMKVGYIHGDISQNDRKQVMNQFRQG 293

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+D+    +++  N    G   LH++ GR GR  E    I L    +
Sbjct: 294 GIAVLVATDVAARGLDIKGVDLVVNFNIAQSGDDHLHRV-GRTGRAGEQGKAITL----I 348

Query: 601 SKNSYTRLS 609
             N + ++S
Sbjct: 349 DSNEWNQMS 357


>gi|261415282|ref|YP_003248965.1| ATP-dependent DNA helicase, RecQ family [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371738|gb|ACX74483.1| ATP-dependent DNA helicase, RecQ family [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327939|gb|ADL27140.1| ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain
           protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 1655

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 138/321 (42%), Gaps = 31/321 (9%)

Query: 302 VGSGKTLV-ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G GK++   L A+ A  + G   V+++PI  L +   + ++K  Q        I   + 
Sbjct: 296 TGGGKSMTFQLPALIAGTQIGALTVVISPIVALMKDQVDVLEKRRQIGD--AAYINSMLS 353

Query: 361 QAHRRKALERIAHGQAHII-IGTHALFQDS----IQYYKLILVIVDEQHRF-GVQQRLKL 414
            A R+  +E++ +G+ +I+ I   +L  ++    +++ ++  ++VDE H F G     ++
Sbjct: 354 PAERKDVIEKVNNGEKNILYISPESLRSNTTFNLLKHRRVERIVVDEAHCFSGWGHDFRV 413

Query: 415 TQKATAPHVLLMT-----ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV--IIPINR 467
                A  +  +       TPIP +    +     +  I      R  +  +  I P  R
Sbjct: 414 DYLYLADFLKDLQKEKNLETPIPVSCFTATAKQSVVDDICNYFKERLNLDLIKFISPAKR 473

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESN--FRSVVERFNSLHEHFTS---SIAIIH 522
            +   + L+   S  ++   +   + +       + S V+   SL E   +   + A  +
Sbjct: 474 TNLTYKVLESSESPNERRKQLVNVLRDYNGPKIIYASKVKTTESLAEELHNRGFASACYN 533

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF----GLAQLHQ 578
           G+M    K ++ D F+NG    ++ATT   +G+D  +  ++      H+     L    Q
Sbjct: 534 GKMESEKKMTIQDQFQNGEVDTMVATTAFGMGVDKDNVELVA-----HYEISSTLENYVQ 588

Query: 579 LRGRVGRGEEI-SSCILLYHP 598
             GR GR  ++ +SCI L++P
Sbjct: 589 EAGRAGRDPKLQASCIALFNP 609


>gi|197105174|ref|YP_002130551.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
 gi|196478594|gb|ACG78122.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
          Length = 513

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 136/338 (40%), Gaps = 42/338 (12%)

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKK 343
           Q   +L I Q   G+GKT    + M   + AG       +A+++AP   LA Q     +K
Sbjct: 38  QGRDVLGIAQ--TGTGKTAAFTLPMIDRLAAGRAKARMPRALVIAPTRELADQVSASFEK 95

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----V 398
           Y    ++   ++ G +    + + L+R       ++I T     D  +  KL++     +
Sbjct: 96  YAMGQKLTWALLIGGVSFKDQEQKLDR----GVDVLIATPGRLLDHFERGKLLMTGVQIM 151

Query: 399 IVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI-TE 450
           +VDE  R         +++  KLT        L  +AT  P    LT     D  +I   
Sbjct: 152 VVDEADRMLDMGFIPDLERIFKLTPAKK--QTLFFSATMPPEITRLTKQFLNDPVRIEAS 209

Query: 451 KPAGR-KPIKTVIIPINRIDEVIERLK----VVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +PA   + I   ++ I   D   +R      +  +E       C     K E +  +   
Sbjct: 210 RPATTAETITQYLVRIPSADPKAKRTALRELIGRAEINNGIVFC---NRKTEVDIVA--- 263

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              SL +H   + AI HG +    +   ++SF+NG  KLL A+ V   G+D+   S +  
Sbjct: 264 --KSLKKHGFDAAAI-HGDLDQATRMRTLESFRNGELKLLCASDVAARGLDIPAVSHVFN 320

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
            +  H     +H++ GR GR        ++  P  SKN
Sbjct: 321 FDVPHHADDYVHRI-GRTGRAGRTGEAFMIVTPADSKN 357


>gi|14591140|ref|NP_143216.1| ATP-dependent helicase [Pyrococcus horikoshii OT3]
 gi|3257752|dbj|BAA30435.1| 912aa long hypothetical ATP-dependent helicase [Pyrococcus
           horikoshii OT3]
          Length = 912

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 135/311 (43%), Gaps = 43/311 (13%)

Query: 303 GSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           GSGKT  A+I +  ++          + +AP+  L +   E +K + + T I VE+  G+
Sbjct: 41  GSGKTEAAIIPVINSILKDNLRPISCLYIAPLKALNRDLLERLKWWGEKTGIKVEVRHGD 100

Query: 359 MPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYY--KLILVIVDE-----QHRF 406
            PQ+ R K ++       HI+I T       L   S++ Y   +  VIVDE      ++ 
Sbjct: 101 TPQSMRAKQVK----NPPHILITTPESLPAILTTKSLRKYLENVKFVIVDEITELVDNKR 156

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE-----KPAGRKPIKTV 461
           G+Q  L L +       L + A  I   L  T   + +I +  E     KP  +K  K  
Sbjct: 157 GIQLILNLKR-------LSLIADFIRIGLSATVGNEEEIREWFEAKRIIKPHLKKRYKFK 209

Query: 462 II---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSLHEHF 514
           ++   P     E+ E+LKV      +   +   +E+ K++    N R   E      + +
Sbjct: 210 VLYPQPKPEDQELAEKLKVPGDVATRLRTLWEIVEKYKKALIFVNTRQFAEILGHRLKTW 269

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              + + HG +S   +       K G  K LI T+ +E+GID+ D  ++I    ++    
Sbjct: 270 GKPVEVHHGSLSKEARIEAERKLKEGKIKALICTSSMELGIDIGDVDVVI----QYMSPR 325

Query: 575 QLHQLRGRVGR 585
           Q+++L  R GR
Sbjct: 326 QVNRLIQRAGR 336


>gi|329123633|ref|ZP_08252193.1| primosome assembly protein PriA [Haemophilus aegyptius ATCC 11116]
 gi|327469832|gb|EGF15297.1| primosome assembly protein PriA [Haemophilus aegyptius ATCC 11116]
          Length = 730

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/389 (20%), Positives = 157/389 (40%), Gaps = 94/389 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +++G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 222 LLDGVTGSGKTEIYLQYIEEILKSGKQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 277

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
             N+    R    +R   GQ+ I+IGT  ALF    Q+  L  +I+DE+H    +Q+   
Sbjct: 278 HSNLTDTQRLYVWDRARSGQSAIVIGTRSALF---TQFSNLGAIILDEEHDSSYKQQDSW 334

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                   + L QK     VL+ +ATP   ++     G      ++++      ++  +I
Sbjct: 335 RYHARDLAIVLAQKLNIA-VLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVI 393

Query: 464 PINRID-------EVIERLKVVLSEGKKAY------------------WI--CPQIEEKK 496
            +   +        ++ER+K  L +G +                    WI  CP  E+  
Sbjct: 394 DLKNQNIQNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPY 453

Query: 497 ESNFRSVVERFN----------------SLH--------EHFTSSIAII--HGRMSDIDK 530
             +    V R +                S H        E    ++  +  H  ++ ID+
Sbjct: 454 TYHQHQNVLRCHHCGAQKTIPRQCDDCGSTHLVTTGLGTEQLEETLKTLFPHYSVARIDR 513

Query: 531 ESV---------MDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHF 571
           +S          ++  + G  ++LI T ++           V +  VD+++  ++     
Sbjct: 514 DSTARKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNVDSALFSLDFRAEE 573

Query: 572 GLAQLH-QLRGRVGRGEEISSCILLYHPP 599
            LAQL+ Q+ GR GR ++    +L  H P
Sbjct: 574 RLAQLYIQVAGRAGRADKQGEVVLQTHYP 602


>gi|124028145|ref|YP_001013465.1| DEAD/DEAH box helicase [Hyperthermus butylicus DSM 5456]
 gi|123978839|gb|ABM81120.1| DEAD/DEAH box helicase [Hyperthermus butylicus DSM 5456]
          Length = 955

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 157/353 (44%), Gaps = 58/353 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-AMAAAVEAGG-----QAVI 326
           PT+ QE AI  IL+     N +L  +    GSGKT  AL+ AM++ +   G       V 
Sbjct: 33  PTEIQEKAIPLILRG----NHVL--IVAPTGSGKTEAALLPAMSSILPMRGFTGKIYVVY 86

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT--HA 384
           + P+  L +  +  +K    +  + +E+  G+  +  +R+ LE       HI+I T    
Sbjct: 87  ITPLRSLNRDIFARMKSLASSVGLRLEVRHGDSTELEKRRFLE----NPPHIMITTPESF 142

Query: 385 LFQDSIQYYK-----LILVIVDEQHRF-----GVQQRLKLTQKATAPHV------LLMTA 428
            F  S++ ++     L  VIVDE H       G +  L L ++A + +V      + ++A
Sbjct: 143 YFLLSVEKFREAISELKYVIVDEVHELVGDKRGAELSLAL-ERAISLYVKGKVQLVGLSA 201

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE-GKKAY- 486
           T     LV+  L      +I E    RK    V++P    D  +  L+  LSE  ++ Y 
Sbjct: 202 TVAEPELVVRKLFGSRYVRIVEASMARKYNVGVVLPSR--DNTVNGLE--LSEFNEELYE 257

Query: 487 -------WICPQIEEKKE----SNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESV 533
                  +I   I EK      +N R   E   +L +     +SI + HG +S   + S+
Sbjct: 258 DTIDRIAYIANVIREKGSVIVFTNTRDTAELIGALLKKVLGENSIEVHHGSLSREHRLSI 317

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            + F+ G    L+AT+ +E+GID+     ++    ++    Q+ +L  RVGR 
Sbjct: 318 EERFRKGEIAALVATSSLELGIDIGHVGYVV----QYLSPRQVVKLVQRVGRA 366


>gi|332204769|gb|EGJ18834.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47901]
          Length = 447

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 153/350 (43%), Gaps = 34/350 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + F+ PT+ Q+  I  +L       R L + +   GSGKT   L+ +   ++     
Sbjct: 16  LKELKFTTPTEVQDKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDEASDS 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QAVI AP   LA Q Y+  ++ + ++ + V ++   +    + + +E++A  Q HI+IG
Sbjct: 70  VQAVITAPSRELATQIYQVARQISAHSDVEVRVVN-YVGGTDKDRQIEKLASNQPHIVIG 128

Query: 382 THALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTATPI 431
           T     D ++      +K    +VDE         L+   K           ++ +AT I
Sbjct: 129 TPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSAT-I 187

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           P+ L         + K    P   K IKT  +  + ID  +   K    +  + Y +   
Sbjct: 188 PQKLQPF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-HDKNAQIYQLTQL 239

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           ++      F +   R + LH + T+    +A IHG ++  +++ +M+  +N   + ++AT
Sbjct: 240 MQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIVAT 299

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 300 DLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|319775791|ref|YP_004138279.1| primosomal protein N' [Haemophilus influenzae F3047]
 gi|317450382|emb|CBY86598.1| primosomal protein N' [Haemophilus influenzae F3047]
          Length = 730

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/389 (20%), Positives = 157/389 (40%), Gaps = 94/389 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +++G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 222 LLDGVTGSGKTEIYLQYIEEILKSGKQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 277

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
             N+    R    +R   GQ+ I+IGT  ALF    Q+  L  +I+DE+H    +Q+   
Sbjct: 278 HSNLTDTQRLYVWDRARSGQSAIVIGTRSALF---TQFSNLGAIILDEEHDSSYKQQDSW 334

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                   + L QK     VL+ +ATP   ++     G      ++++      ++  +I
Sbjct: 335 RYHARDLAIVLAQKLNIA-VLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVI 393

Query: 464 PINRID-------EVIERLKVVLSEGKKAY------------------WI--CPQIEEKK 496
            +   +        ++ER+K  L +G +                    WI  CP  E+  
Sbjct: 394 DLKNQNIQNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPY 453

Query: 497 ESNFRSVVERFN----------------SLH--------EHFTSSIAII--HGRMSDIDK 530
             +    V R +                S H        E    ++  +  H  ++ ID+
Sbjct: 454 TYHQHQNVLRCHHCGAQKTIPRQCGDCGSTHLVTTGLGTEQLEETLKTLFPHYSVARIDR 513

Query: 531 ESV---------MDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHF 571
           +S          ++  + G  ++LI T ++           V +  VD+++  ++     
Sbjct: 514 DSTARKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNVDSALFSLDFRAEE 573

Query: 572 GLAQLH-QLRGRVGRGEEISSCILLYHPP 599
            LAQL+ Q+ GR GR ++    +L  H P
Sbjct: 574 RLAQLYIQVAGRAGRADKQGEVVLQTHYP 602


>gi|24213325|ref|NP_710806.1| ATP-dependent DNA helicase RecQ [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45658788|ref|YP_002874.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24194069|gb|AAN47824.1| ATP-dependent DNA helicase RecQ [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45602032|gb|AAS71511.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 631

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 23/117 (19%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF----GLAQLH 577
           H   +D  +E   D + NG   +L+AT    +G+D  D  ++I     H+     L   +
Sbjct: 283 HAGRTDSSRERAQDGYNNGKTNILVATNAFGMGLDQPDVRLVI-----HYQIPASLESYY 337

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           Q  GR GR  + S CIL YHP          S L     GF+I +E+   RK GE L
Sbjct: 338 QEAGRAGRDGKPSDCILFYHP----------SDL--VTQGFIIGKEN--NRKGGETL 380


>gi|256088555|ref|XP_002580396.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665966|emb|CAZ36635.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 1544

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 130/312 (41%), Gaps = 43/312 (13%)

Query: 302  VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
             GSGKTL  L+ +   +E         G  A+++AP   LA Q ++  KK  Q       
Sbjct: 896  TGSGKTLAFLVPLMRHLEHQAPLNPGDGPIALLLAPTRELALQIFKETKKLCQAADARAV 955

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
             + G    + +   L+R     A II+ T     D +          ++   V++DE  R
Sbjct: 956  CVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAANGGRVTNLHRCSYVVLDEADR 1011

Query: 406  ---FGVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                G + Q +++ +        LM +   PR +           +I  +     PI+  
Sbjct: 1012 MFDLGFEPQVMRIIENCRPDRQTLMFSATFPRQM-----------EILARKVLTLPIEIQ 1060

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIE-EKKESNFRSVVERFNSLHE------HF 514
            I   + +   +E+   +LSE +K Y +   +   ++E +    VE+  S  E       +
Sbjct: 1061 IGGRSVVCSDVEQHAFILSEEEKVYKVLELLGIYQEEGSVLVFVEKQESADELMRVLLKY 1120

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                  +HG +   D++SV+  FK G  +LLIAT+V   G+DV D  ++I  +  +    
Sbjct: 1121 GYPCLSLHGGIDQYDRDSVIMDFKRGNIRLLIATSVAARGLDVTDLLLVINYDCPNHYED 1180

Query: 575  QLHQLRGRVGRG 586
             +H+  GR GR 
Sbjct: 1181 YVHRC-GRTGRA 1191


>gi|17136248|ref|NP_476595.1| eukaryotic initiation factor 4a, isoform C [Drosophila
           melanogaster]
 gi|24582075|ref|NP_723137.1| eukaryotic initiation factor 4a, isoform A [Drosophila
           melanogaster]
 gi|24582078|ref|NP_723138.1| eukaryotic initiation factor 4a, isoform B [Drosophila
           melanogaster]
 gi|24582080|ref|NP_723139.1| eukaryotic initiation factor 4a, isoform D [Drosophila
           melanogaster]
 gi|12644381|sp|Q02748|IF4A_DROME RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|5052532|gb|AAD38596.1|AF145621_1 eukaryotic initiation factor-4a [Drosophila melanogaster]
 gi|17861902|gb|AAL39428.1| GM14109p [Drosophila melanogaster]
 gi|21464294|gb|AAM51950.1| GH17619p [Drosophila melanogaster]
 gi|22945717|gb|AAF52317.2| eukaryotic initiation factor 4a, isoform A [Drosophila
           melanogaster]
 gi|22945718|gb|AAN10566.1| eukaryotic initiation factor 4a, isoform C [Drosophila
           melanogaster]
 gi|22945719|gb|AAN10567.1| eukaryotic initiation factor 4a, isoform B [Drosophila
           melanogaster]
 gi|22945720|gb|AAN10568.1| eukaryotic initiation factor 4a, isoform D [Drosophila
           melanogaster]
 gi|260166767|gb|ACX32995.1| LD22268p [Drosophila melanogaster]
          Length = 403

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 121/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q    +    +  ++   
Sbjct: 71  IAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSH 130

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-------QYYKL-ILVIVDEQHR 405
              G      R  A  RI     H+++GT     D I       QY KL +L   DE   
Sbjct: 131 ACIGGT--NVREDA--RILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLS 186

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + +++   K   P   V+L++AT  P  L ++            +   R P+    I
Sbjct: 187 RGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVS------------RCFMRDPVS---I 231

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      K+  W    + +  ++          N R  V++       
Sbjct: 232 LVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSI 291

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   D+E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 292 HNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 342


>gi|282860327|ref|ZP_06269396.1| DEAD/DEAH box helicase [Prevotella bivia JCVIHMP010]
 gi|282586924|gb|EFB92160.1| DEAD/DEAH box helicase [Prevotella bivia JCVIHMP010]
          Length = 438

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 151/359 (42%), Gaps = 51/359 (14%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            KIL  +  +P + Q++    IL   + K+    ++    G+GK+   LI +   + A  
Sbjct: 4   NKILDKLGITPNEMQKATFDAILH--TDKDV---VVLSPTGTGKSFAYLIPLCQRINAKS 58

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              QAV++ P   LA Q    +K      + +   + G        + L  +   +  I+
Sbjct: 59  DNVQAVVVLPSRELALQSATVVKDLGSGLRAMA--LYGGRATMDEHRLLREV---KPQIV 113

Query: 380 IGTHALF-----QDSIQYYKLILVIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTAT 429
             T   F     +D++   +++ +++DE  +    G Q+ +   + +       +L++AT
Sbjct: 114 FTTPGRFNDHLDKDNLDVREVVWMVIDEFDKCLEMGFQKEMSSLIFKLPNIKRRILLSAT 173

Query: 430 ---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKK 484
               IP  + +  L  ID S   E  + R  IKT I+  P     E +  L     +   
Sbjct: 174 YSEEIPSFVSMGRLMKIDYSDKDEVVSDR--IKTFIVNSPDKDKLETLSDLLCTFRDQSS 231

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             ++          N+R  VER  S       ++++ HG +   ++E+ +  F NG+  +
Sbjct: 232 IVFL----------NYRDSVERTASFLREKGFTLSLFHGGLDQTEREAALYKFSNGSANI 281

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVGRGEEISSCILLYHP 598
           L++T +   G+D+ D + I+     H+ L +     +H++ GR  R ++  +   +  P
Sbjct: 282 LVSTDLAARGLDIPDVNNIV-----HYHLPEGEDSFVHRV-GRTARWDKEGATFFILGP 334


>gi|256088559|ref|XP_002580398.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665968|emb|CAZ36637.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 1476

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 131/312 (41%), Gaps = 43/312 (13%)

Query: 302  VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
             GSGKTL  L+ +   +E         G  A+++AP   LA Q ++  KK  Q       
Sbjct: 828  TGSGKTLAFLVPLMRHLEHQAPLNPGDGPIALLLAPTRELALQIFKETKKLCQAADARAV 887

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
             + G    + +   L+R     A II+ T     D +          ++   V++DE  R
Sbjct: 888  CVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAANGGRVTNLHRCSYVVLDEADR 943

Query: 406  ---FGVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                G + Q +++ +        LM +   PR + + +   + +           PI+  
Sbjct: 944  MFDLGFEPQVMRIIENCRPDRQTLMFSATFPRQMEILARKVLTL-----------PIEIQ 992

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIE-EKKESNFRSVVERFNSLHE------HF 514
            I   + +   +E+   +LSE +K Y +   +   ++E +    VE+  S  E       +
Sbjct: 993  IGGRSVVCSDVEQHAFILSEEEKVYKVLELLGIYQEEGSVLVFVEKQESADELMRVLLKY 1052

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                  +HG +   D++SV+  FK G  +LLIAT+V   G+DV D  ++I  +  +    
Sbjct: 1053 GYPCLSLHGGIDQYDRDSVIMDFKRGNIRLLIATSVAARGLDVTDLLLVINYDCPNHYED 1112

Query: 575  QLHQLRGRVGRG 586
             +H+  GR GR 
Sbjct: 1113 YVHRC-GRTGRA 1123


>gi|258542905|ref|YP_003188338.1| primosome assembly protein PriA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633983|dbj|BAH99958.1| primosomal protein N' [Acetobacter pasteurianus IFO 3283-01]
 gi|256637043|dbj|BAI03012.1| primosomal protein N' [Acetobacter pasteurianus IFO 3283-03]
 gi|256640095|dbj|BAI06057.1| primosomal protein N' [Acetobacter pasteurianus IFO 3283-07]
 gi|256643152|dbj|BAI09107.1| primosomal protein N' [Acetobacter pasteurianus IFO 3283-22]
 gi|256646207|dbj|BAI12155.1| primosomal protein N' [Acetobacter pasteurianus IFO 3283-26]
 gi|256649259|dbj|BAI15200.1| primosomal protein N' [Acetobacter pasteurianus IFO 3283-32]
 gi|256652246|dbj|BAI18180.1| primosomal protein N' [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655303|dbj|BAI21230.1| primosomal protein N' [Acetobacter pasteurianus IFO 3283-12]
          Length = 756

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 7/129 (5%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q++A   + Q +++    + +L+G  GSGKT + L A+A  +E G QA+I+ P   L+ Q
Sbjct: 228 QQTAAVALRQTVTENRFSVTLLEGVTGSGKTEIYLEAIAECLEQGKQALILLPEIALSAQ 287

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKL 395
              +++++++   +   +    + Q  RR      A G A +I+G   ALF   + ++ L
Sbjct: 288 ---WMERFSRRFGVQPAVWHSEIGQRARRLTWLGAADGSASVIVGARSALF---LPFHNL 341

Query: 396 ILVIVDEQH 404
            L+IVDE+H
Sbjct: 342 GLIIVDEEH 350


>gi|116511271|ref|YP_808487.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106925|gb|ABJ72065.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 446

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 152/361 (42%), Gaps = 51/361 (14%)

Query: 263 QKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            + L NI F  PT+ Q+  I  +L       R L + +   GSGKT   L+ +   +   
Sbjct: 13  NQTLENIKFEKPTEVQQKLIPIVLS-----GRDL-VGESKTGSGKTHTFLLPIFQNINPE 66

Query: 322 ---GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
               QAVI AP   LA Q Y+  +++ + N +I V    G   +A + K LE     Q H
Sbjct: 67  LDEVQAVITAPSRELATQIYKAAQEFVKVNGKIRVSNFVGGTDKARQIKKLE---AAQPH 123

Query: 378 IIIGTHALFQDSIQYYKLIL-----VIVDEQH---RFGVQQRLKLTQKATAPHV-LLMTA 428
           I+IGT     D ++   L++      +VDE       G    +     +    V +L+ +
Sbjct: 124 IVIGTPGRIHDLVKSNALVVHTARTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFS 183

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGKK 484
             IP+ L               +P  +K    P+   I     I + IE   +V ++G  
Sbjct: 184 ATIPQKL---------------QPFLKKYLHNPVMEKIANKTVISDTIENW-LVSTKGSS 227

Query: 485 AYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
              +  Q+ +         F +   R + +H   TS+   +A IHG +   +++ +M+S 
Sbjct: 228 HNQLLLQLTKALNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSI 287

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN   + ++AT +   GID+   S II +         +H++ GR GR     + I LY 
Sbjct: 288 KNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRV-GRSGRNGLRGTAITLYS 346

Query: 598 P 598
           P
Sbjct: 347 P 347


>gi|330997868|ref|ZP_08321702.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329569472|gb|EGG51242.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 440

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 128/322 (39%), Gaps = 41/322 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           +L    GSGKT+  L+ +  +++     Q V++ P   LA Q  +  K  +  T I V  
Sbjct: 36  VLLSPTGSGKTVAYLLPLVQSLKEENVLQTVVLVPSRELALQIEQVFK--SMGTGIPVMS 93

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF 406
             G  P     + ++ +      +IIGT     D +          + L++   D+    
Sbjct: 94  CYGGRPAMDEHRTMKSL---NPQVIIGTPGRMNDHLNKGNIDASHVHTLVIDEFDKCLEM 150

Query: 407 GVQQRLK--LTQKATAPHVLLMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           G Q+ +   + Q        L++AT    IPR +       ++  +  E+   R  + TV
Sbjct: 151 GFQEEMSEVIAQIPYLKRRFLLSATDALAIPRFVSEGDFLKLNFLEDEEQIPERIKVYTV 210

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
             P     EV+ +L   L  G K+  I          N+R  VER          S  + 
Sbjct: 211 KSPQKDKLEVLSKLLCYL--GNKSSLIF--------VNYRESVERVYRYLLQEGISCEMF 260

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQL 576
           HG M   D+E  +  F NG+C + ++T +   G+D+ +   +I     H+ L       +
Sbjct: 261 HGGMEQKDRERALYKFSNGSCNVFVSTDLAARGLDIPNIDHVI-----HYHLPLNEDTYI 315

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           H+  GR  R +   +  L+  P
Sbjct: 316 HR-NGRTARWDASGNVFLILGP 336


>gi|110835102|ref|YP_693961.1| primosomal protein N` [Alcanivorax borkumensis SK2]
 gi|110648213|emb|CAL17689.1| primosomal protein N` [Alcanivorax borkumensis SK2]
          Length = 724

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 98/224 (43%), Gaps = 26/224 (11%)

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           I ++   ++ ++ L   P +    Q  AI+ I      K     +L G  GSGKT V L 
Sbjct: 178 IHVDTRPEVPRETLAQAPLAANAEQRGAIQAI---QKAKGFAPFLLDGITGSGKTEVYLQ 234

Query: 313 AMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           AMA  + AG Q +++ P IG+  Q     ++++ Q   + V  +   +    R       
Sbjct: 235 AMAPLLAAGKQVMVLVPEIGLTPQT----VQRFKQRFAVPVVTLHSGLSDRERLDNWLAA 290

Query: 372 AHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-----------TQKAT 419
             G A IIIGT  A+F   +      L+IVDE H   ++Q+               Q+  
Sbjct: 291 REGHARIIIGTRSAIFTPMLNP---ALIIVDEAHDSSLKQQDGFRYHARDLATWRAQQLE 347

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG--RKPIKTV 461
            P V+L +ATP   TL LT  G     K++++     R PI+ V
Sbjct: 348 IP-VILGSATPALETLHLTRQGRFQWLKLSQRATAQSRPPIEIV 390


>gi|187933251|ref|YP_001885671.1| cold-shock deAd box protein a [Clostridium botulinum B str. Eklund
           17B]
 gi|187721404|gb|ACD22625.1| cold-shock deAd box protein a [Clostridium botulinum B str. Eklund
           17B]
          Length = 367

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 156/361 (43%), Gaps = 61/361 (16%)

Query: 272 SPTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVI 326
           +PT  QE +I  IL  +D+        I +   G+GKTL  L+ +   +     G Q +I
Sbjct: 23  TPTPIQEESIPKILLGKDV--------IGEAKTGTGKTLAFLLPIFQNISPNTNGTQVLI 74

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           ++P   LA Q  E  KK   N  I +    G      + K L+       H++I T    
Sbjct: 75  LSPTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLKKLKH----NIHLVIATPGRL 130

Query: 387 QD-----SIQYYKLILVIVDEQHRF---GVQQRL-KLTQKATAPHVLLMTATPIPRTLVL 437
            D     +I   KL  +++DE  +    G +  + K+ + A+  H          +TL  
Sbjct: 131 LDHIERKTIDLSKLKTIVIDEADQMLLMGFKNDIEKIMKAASKKH----------QTLCF 180

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK---VVLSEGKKAYWICPQIEE 494
           ++  D  + K+    A R  I  + I I      ++++K   V  ++  K   +C  ++E
Sbjct: 181 SATMDSQVKKL----AYRYMIDPLFIDIKSPTIAVDKIKQQVVETTDRWKQDSLCAALQE 236

Query: 495 KKESNFRSVV-----ERFN----SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             ++ F +++      R +    +LH+   +    IH  +    +E +M SF+N   + L
Sbjct: 237 --DNPFMAIIFCRTKRRADVLEIALHQKGLNC-QKIHSDVPQAKRERIMKSFRNADIQYL 293

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNS 604
           IAT V   GID+   S I   +      + +H++ GR GR GE+  +C+ +      K+S
Sbjct: 294 IATDVAARGIDISGVSHIYNYDTPETPESYIHRI-GRTGRAGEDGYTCMFV----APKDS 348

Query: 605 Y 605
           Y
Sbjct: 349 Y 349


>gi|18977876|ref|NP_579233.1| large helicase-related protein [Pyrococcus furiosus DSM 3638]
 gi|18893634|gb|AAL81628.1| large helicase-related protein [Pyrococcus furiosus DSM 3638]
          Length = 980

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 135/316 (42%), Gaps = 45/316 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            GSGKT  A+I +  A+         A+ +AP+  L +   E +K + + T +I+E+  G
Sbjct: 105 TGSGKTEAAVIPILDAILRENLKPIAAIYIAPLKALNRDLLERLKWWEEKTGVIIEVRHG 164

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHAL---------FQDSIQYYKLILVIVDE-----Q 403
           + P + R K ++       H++I T  +         F+  ++  K I  ++DE     +
Sbjct: 165 DTPTSKRLKQVK----NPPHLLITTPEMLPAILTTKSFRPYLKNTKFI--VIDEIGELIE 218

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE-----KPAGRKPI 458
           ++ G Q  L L +       L+    PI   L  T   +  +    E     KP  +K  
Sbjct: 219 NKRGTQLILNLKRLE-----LITEDKPIRIGLSATIGSEEKVRLWMEADEVVKPRLKKKY 273

Query: 459 KTVII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSLH 511
           K  ++   PI   +++ E LKV +    +   +   +E+ K+     N R   E      
Sbjct: 274 KFTVLYPQPIPEDEKLAEELKVPIEVATRLRVVWDIVEKHKKVLIFVNTRQFAEILGHRL 333

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           + +   + + HG +S   +       K G  K LI T+ +E+GID+ D   +I    ++ 
Sbjct: 334 KAWGKPVEVHHGSLSREARIEAEKKLKEGKIKALICTSSMELGIDIGDVDAVI----QYM 389

Query: 572 GLAQLHQLRGRVGRGE 587
              Q+++L  R GR +
Sbjct: 390 SPRQVNRLVQRAGRSK 405


>gi|327481375|gb|AEA84685.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri DSM 4166]
          Length = 443

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 150/352 (42%), Gaps = 52/352 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ------AVI 326
           PT  Q +AI   L+      R LR+     GSGKT   ++ M   +    Q      A+I
Sbjct: 23  PTPVQVAAIPPALE-----GRDLRV-TAQTGSGKTAAFVLPMLNRLIGDAQPRVDVRALI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + +++++Q T I   +ITG      +   L ++      ++IGT    
Sbjct: 77  LLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD----VLIGTPGRL 132

Query: 387 QDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            + +    LIL     +++DE  R     F    +  + +       LL +AT     L 
Sbjct: 133 IEHLNAGNLILKDVEVLVIDEADRMLDMGFAEDMQRLVGECEKRQQTLLFSATSGGAGLR 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE--RLKVVLSEG-----KKAYWIC 489
                   ++K+   P        + + +NR+ E+ E  R +++ ++      K  +W+ 
Sbjct: 193 EM------VAKVLNDP--------LHLQLNRVSELNESTRQQIITADDPAHKEKLVHWLL 238

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                +K   F +   + + L+ H  +    + ++HG     +++  ++  K G  K+L+
Sbjct: 239 ANETYQKAVIFTNTRAQADRLYGHLVAGDIKVFVLHGEKDQKERKLAIERLKQGGVKVLV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
           AT V   G+D+    ++I  +    G   +H++ GR GR G E  +  L+ H
Sbjct: 299 ATDVAARGLDIEGMDLVINFDMPRSGDEYVHRI-GRTGRAGAEGLAISLICH 349


>gi|229826164|ref|ZP_04452233.1| hypothetical protein GCWU000182_01536 [Abiotrophia defectiva ATCC
           49176]
 gi|229789034|gb|EEP25148.1| hypothetical protein GCWU000182_01536 [Abiotrophia defectiva ATCC
           49176]
          Length = 741

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 17/191 (8%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + Q+ A+  ++ D         +L G  GSGKT V +  M   + +G Q + + P   L+
Sbjct: 207 EEQKRAVDKVVNDYKSGIMGRYLLFGITGSGKTEVYMEIMEEVIRSGRQVIFLIPEIALS 266

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYY 393
              ++ +++ +      + ++   M Q  R     R  +G   II+G   ALF     + 
Sbjct: 267 ---FQMVERLSARFGERISVMNSKMSQGERYDQYLRAKNGDIDIIVGPRSALF---TPFS 320

Query: 394 KLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L L+IVDE+H          R+  ++            V+L +ATP    + L S   I
Sbjct: 321 NLGLIIVDEEHEGSYKSSKTPRYHARETALYRAGKENAAVILGSATPSLEAVKLASDKKI 380

Query: 444 DISKITEKPAG 454
           ++  +TE+PAG
Sbjct: 381 EVLMLTERPAG 391


>gi|189239856|ref|XP_974261.2| PREDICTED: similar to CG6418 CG6418-PB [Tribolium castaneum]
          Length = 699

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 151/368 (41%), Gaps = 45/368 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N + K+ + I++    SPT  Q  A+   LQ       +L I Q   GSGKT   L  +
Sbjct: 236 FNFDDKLLKAIIKAEYTSPTPIQAQAVPCALQGRD----VLGIAQ--TGSGKTAAFLWPL 289

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              V          G  A+I+AP   LA Q Y   KK+ +   + V    G   +  +  
Sbjct: 290 LKHVSTQPPVTAGEGPAALILAPTRELAIQIYNEAKKFARVYDLTVVCAYGGGSKWEQSL 349

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR---FGVQQRLKLTQKA 418
           AL+      A I++ T     D ++       ++  +++DE  R    G + +++     
Sbjct: 350 ALKE----GADIVVATPGRIIDHVKGGATNLQRVTFLVLDEADRMFELGFEPQVRSVCNH 405

Query: 419 TAP--HVLLMTATPIPR--TLVLTSLGD-IDISKITEKPAGRKPIKTVIIPIN---RIDE 470
             P    LL +AT   R   L   +L D + IS+     A     + V++  N   + D 
Sbjct: 406 VRPDRQTLLFSATFRKRIEKLAKDALNDPVRISQGITGQANEDVTQRVLLMENQQLKRDW 465

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           ++  L  +LS G    ++  +++ ++ +N   V E F  L         ++HG +   ++
Sbjct: 466 LVNNLVELLSAGSVLVFVTKKVDAEQLANDLKVKE-FECL---------LLHGDIEQAER 515

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             V+ +FK   C LL+AT V   G+D+     ++  +         H++ GR GR     
Sbjct: 516 NKVITAFKKKECSLLVATDVAARGLDIPHIRTVVNYDIARDIDTHTHRI-GRTGRAGNQG 574

Query: 591 SCILLYHP 598
           +   L  P
Sbjct: 575 TAYTLITP 582


>gi|326930919|ref|XP_003211585.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Meleagris
           gallopavo]
          Length = 597

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 137/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y++  ++   
Sbjct: 130 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKST 189

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 190 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLD 245

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  V  ++G +++S      A
Sbjct: 246 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELS------A 299

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + D++I  ++ ++SE           +E K   F     R + L 
Sbjct: 300 NHNILQIVDVCHDVEKDDKLIRLMEEIMSE-----------KENKTIVFVETKRRCDDLT 348

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 349 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 408

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 409 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVNDLISVLR 451


>gi|254719036|ref|ZP_05180847.1| ATP-dependent RNA helicase DDX17 [Brucella sp. 83/13]
 gi|265984026|ref|ZP_06096761.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|264662618|gb|EEZ32879.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 482

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 147/346 (42%), Gaps = 61/346 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+    +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE----RKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +  KL+L     +++DE  R        +      P +  +    P  R TL  +
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADR--------MLDMGFIPDIERICKLIPFTRQTLFFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDE-VIERL---------------KVVLSEG 482
           +    +I+K+TE+     P++  +   +   + V +RL                ++ SEG
Sbjct: 186 ATMPPEITKLTEQFL-HSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEG 244

Query: 483 ---KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
              K A   C        +  + V E F SL  H   + A+ HG M    + +++ SFK+
Sbjct: 245 DSLKNAIIFC--------NRKKDVSELFRSLTRHEFDAGAL-HGDMDQRARMAMLSSFKD 295

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR
Sbjct: 296 GKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGR 340


>gi|146291658|ref|YP_001182082.1| primosomal protein N' [Shewanella putrefaciens CN-32]
 gi|145563348|gb|ABP74283.1| primosomal protein N' [Shewanella putrefaciens CN-32]
          Length = 731

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 10/150 (6%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q +L   P    K Q  A+  + Q   Q+     +L+G  GSGKT V L  +   ++ G 
Sbjct: 192 QLVLDETPHRLNKEQAIAVTILNQ---QQGYHCTLLEGITGSGKTEVYLAVLEEILKQGK 248

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+I+ P IG+  Q    F +++  N  ++   +T N     R +A  +   GQA IIIG
Sbjct: 249 QALILVPEIGLTPQTINRFKRRFKVNVAVLHSGLTDN----QRLEAWRQARCGQAAIIIG 304

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           T +     + Y  +I  I+DE+H    +Q+
Sbjct: 305 TRSALFTPMAYPGMI--ILDEEHDSSFKQQ 332


>gi|328349839|emb|CCA36239.1| hypothetical protein PP7435_Chr1-0071 [Pichia pastoris CBS 7435]
          Length = 483

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 164/380 (43%), Gaps = 81/380 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+K QE A+  +L + ++      I Q   G+GKT    + M + V+      QA+ ++P
Sbjct: 116 PSKIQEKALPLLLSNPARN----MIGQSQSGTGKTAAFSLTMLSRVDESKPVVQAICLSP 171

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ---AHIIIGTHALF 386
              LA+Q  E +++  + T+I  +++   +P+A        +  GQ   A+I++GT  L 
Sbjct: 172 ARELARQTLEVVQQMGKYTKITTQLV---VPEA--------VPRGQPVTANILVGTPGLT 220

Query: 387 QD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            D      I    + + ++DE      +Q L   Q       L  TA      LVL S  
Sbjct: 221 LDLIRRKQIDTSNVKVFVLDEADNMLDKQGLG-DQCVRVKKFLPQTAQ-----LVLFSAT 274

Query: 442 DIDISKITEKPAGRKPIKTVIIP-INRIDEVIERLKVVLSEG-KKAYWICPQIEEKKESN 499
             D  +   K AG+       +P  N ++   E L V   +G K+ Y  C    + +E  
Sbjct: 275 FPDEVR---KYAGK------FVPNANSLELKHEELNV---DGIKQLYMDC----DSQEHK 318

Query: 500 FRSVVERF------------------NSLHEHFTS---SIAIIHGRMSDIDKESVMDSFK 538
           F  + E +                  N L++       +++I+HG +   +++ ++D F+
Sbjct: 319 FDVLCELYGLLTIGSSIIFVQRKETANMLYKRMKDEGHTVSILHGDLESSERDRLIDDFR 378

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIEN--AEHFGLAQ----LHQLRGRVGRGEEISSC 592
            G  K+LI T V+  GID+   S+++  +   +  G A     LH++ GR GR   +   
Sbjct: 379 EGRSKVLITTNVLARGIDIASVSMVVNYDLPVDRQGNADPSTYLHRI-GRTGRFGRVGVS 437

Query: 593 ILLYHPPLSKNSYTRLSVLK 612
           I   H    + SY +L  ++
Sbjct: 438 ISFVH---DRTSYEQLMAIR 454


>gi|254486082|ref|ZP_05099287.1| primosomal protein N', putative [Roseobacter sp. GAI101]
 gi|214042951|gb|EEB83589.1| primosomal protein N', putative [Roseobacter sp. GAI101]
          Length = 731

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 27/191 (14%)

Query: 261 IAQKILRNIPFS------PTK----SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
           I Q   R++PF+      P+K     Q +A   + + ++ +     +L+G  GSGKT V 
Sbjct: 175 IEQDSPRDVPFARMDPTLPSKELTADQAAASALLAKGVASETYATTLLRGVTGSGKTEVY 234

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           L A+AAA++AG QA+++ P   L +Q   F+ +                    RR+    
Sbjct: 235 LEAVAAALKAGRQALVLLPEIALTEQ---FLHRIAARFGTKPAEWHSGATMTERRRIWRM 291

Query: 371 IAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------T 419
           +  G A ++IG   ALF   + +  L L++VDE+H    +Q   +   A           
Sbjct: 292 VGQGNAQVVIGARSALF---LPFQNLGLIVVDEEHDTSYKQEEGVLYNARDMAVLRASIC 348

Query: 420 APHVLLMTATP 430
              V+L +ATP
Sbjct: 349 GAQVVLASATP 359


>gi|156720285|dbj|BAF76795.1| vasa-related protein [Enchytraeus japonensis]
          Length = 516

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 155/358 (43%), Gaps = 55/358 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q+ AI  IL     K  ++   Q   GSGKT   L+ + + +   G          
Sbjct: 100 PTPIQKWAIPIILA----KRDLMACAQ--TGSGKTAAFLLPVLSTMLRNGIEGSSYSEVQ 153

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             QA+I+ P   L  Q +   +K++ NT +   ++ G +  +++ + +E+     AH+I+
Sbjct: 154 EPQAIIVGPTRELVSQIFNEARKFSYNTIVRPVVVYGGVQTSYQLREIEK----GAHMIV 209

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLK--LTQKATAP----HVLLM 426
           GT     D I   K+ L     +I+DE  R    G +  +K  + +    P      L+ 
Sbjct: 210 GTPGRLLDFIGRGKISLKKVKFLILDEADRMLDLGFKDDIKKLMNELGMPPKQERQTLMF 269

Query: 427 TATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE---VIERLKVVLS 480
           +AT  P   ++L    L D     +         I+ ++  + + D+   +I+ L    +
Sbjct: 270 SAT-FPEEVQSLARELLNDYLFVTVGRVGGANTDIEQMVYNVGQFDKRQKLIDLLNACPN 328

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           E    +     +E+K+ ++F   +  F S  E  T+SI   HG     ++E  ++ FK+G
Sbjct: 329 ERVLVF-----VEQKRNADF---LASFLSQSELPTTSI---HGDREQREREIALNDFKSG 377

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              +L+AT+V   G+D+     ++  +        +H++ GR GR   +      ++P
Sbjct: 378 RKPILVATSVAARGLDIPGVMHVVNYDMPKEIDEYVHRI-GRTGRCGNMGKATTFFNP 434


>gi|68248944|ref|YP_248056.1| primosome assembly protein PriA [Haemophilus influenzae 86-028NP]
 gi|68057143|gb|AAX87396.1| primosomal protein N' [Haemophilus influenzae 86-028NP]
          Length = 730

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/389 (20%), Positives = 157/389 (40%), Gaps = 94/389 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +++G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 222 LLDGVTGSGKTEIYLQYIEEILKSGKQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 277

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
             N+    R    +R   GQ+ I+IGT  ALF    Q+  L  +I+DE+H    +Q+   
Sbjct: 278 HSNLTDTQRLYVWDRARSGQSAIVIGTRSALF---TQFSNLGAIILDEEHDSSYKQQDSW 334

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                   + L QK     VL+ +ATP   ++     G      ++++      ++  +I
Sbjct: 335 RYHARDLAIVLAQKLNIA-VLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVI 393

Query: 464 PINRID-------EVIERLKVVLSEGKKAY------------------WI--CPQIEEKK 496
            +   +        ++ER+K  L +G +                    WI  CP  E+  
Sbjct: 394 DLKNQNIQNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPY 453

Query: 497 ESNFRSVVERFN----------------SLH--------EHFTSSIAII--HGRMSDIDK 530
             +    V R +                S H        E    ++  +  H  ++ ID+
Sbjct: 454 TYHQHQNVLRCHYCGAQKTIPRQCGDCGSTHLVTTGLGTEQLEETLKTLFPHYSVARIDR 513

Query: 531 ESV---------MDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHF 571
           +S          ++  + G  ++LI T ++           V +  VD+++  ++     
Sbjct: 514 DSTARKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNVDSALFSLDFRAEE 573

Query: 572 GLAQLH-QLRGRVGRGEEISSCILLYHPP 599
            LAQL+ Q+ GR GR ++    +L  H P
Sbjct: 574 RLAQLYIQVAGRAGRADKQGEVVLQTHYP 602


>gi|325662246|ref|ZP_08150861.1| hypothetical protein HMPREF0490_01599 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471498|gb|EGC74719.1| hypothetical protein HMPREF0490_01599 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 747

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 17/206 (8%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +  K  +   F  T++Q++AI    ++  +  R   ++ G  GSGKT V +  +   +  
Sbjct: 193 VTAKRTKQQSFCYTEAQQAAIHTFCEEYRRGKRGTYLVYGVTGSGKTEVYMEMIEHVIAE 252

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G QA+++ P   L    Y+ + ++ Q     V II   + +  R   + R   G+ +++I
Sbjct: 253 GKQAIVLIPEIALT---YQTVMRFYQRFGDRVSIINSRLSKGERYDQMLRAKRGEINVMI 309

Query: 381 GTH-ALFQDSIQYYKLILVIVDEQHR--FGVQQRLKLTQKATA--------PHVLLMTAT 429
           G   ALF     + +L L+I+DE+H   +  +Q  +   + TA          V+L +AT
Sbjct: 310 GPRSALF---TPFERLGLIIIDEEHEGTYKSEQTPRYHARETAIARAAMEGASVVLGSAT 366

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGR 455
           P          G+  + ++ E+   R
Sbjct: 367 PSMEAFYKAVTGEFRLLRLPERAKQR 392


>gi|308810851|ref|XP_003082734.1| putative ethylene-responsive RNA helicase (ISS) [Ostreococcus
           tauri]
 gi|116061203|emb|CAL56591.1| putative ethylene-responsive RNA helicase (ISS) [Ostreococcus
           tauri]
          Length = 682

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 156/380 (41%), Gaps = 41/380 (10%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           + + +LR    +P+ +Q  A    L           +   + GSGKTL  ++     V A
Sbjct: 71  VTEDLLREKFEAPSAAQSLAWPSALSGRDV------VAVAETGSGKTLAYVLPAIVHVNA 124

Query: 321 --------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                   G  A+++AP   LA Q    + KY  ++Q+    + G  P+  + KAL+   
Sbjct: 125 QPVLAPGEGPIALVLAPTRELACQIELEVAKYAASSQLKHACVYGGAPKGPQVKALK--- 181

Query: 373 HGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR-----FGVQQRLKLTQKATAPH 422
            G+  I + T     D ++       +   V++DE  R     F  Q R  ++Q      
Sbjct: 182 SGECEICVATPGRLIDFLERGVTNLRRTTFVVLDEADRMLDMGFEPQIRRIVSQTRPDRQ 241

Query: 423 VLLMTAT------PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE-VIERL 475
            LL TAT       I RTLV  +  +  +S   +     K ++ ++  +N  +E   E+L
Sbjct: 242 TLLFTATWPVEVREIARTLVRNNPVEFRVSGAGDSLLASKNVEQIVHVMNGDEEDKYEKL 301

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              L        +   +E K      SV      L      ++ + HG     +++ V+ 
Sbjct: 302 IETLEREMDGERLLVFVETKA-----SVDALTRKLRVGGWPALGL-HGDKEQKERDWVLS 355

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCIL 594
            FK+G+  ++IAT V   G+DV    +++  +  + G  + +  R GR GR   +   + 
Sbjct: 356 EFKSGSSPIMIATDVASRGLDVEGVKLVVNYDFPNRGGVEEYVHRIGRTGRAGRLGKSVT 415

Query: 595 LYHPPLSKNSYTRLSVLKNT 614
            +     +++   + VL+++
Sbjct: 416 FFTIRDGRHARGLVDVLRSS 435


>gi|103487760|ref|YP_617321.1| primosome assembly protein PriA [Sphingopyxis alaskensis RB2256]
 gi|98977837|gb|ABF53988.1| primosomal protein N' [Sphingopyxis alaskensis RB2256]
          Length = 722

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 9/116 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V + A+AAAV+AG QA+++ P I +       F  ++       V   
Sbjct: 214 LLDGVTGSGKTEVYMEAIAAAVDAGRQALVLLPEIALTEPMLTRFAARFGCEP---VAWH 270

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQ 410
           +G +    RR+A   IA G+A I++G   ALF   + Y +L +++VDE H    +Q
Sbjct: 271 SG-LRSTERRRAWHAIASGEARIVVGARSALF---LPYARLGVIVVDEAHETSFKQ 322


>gi|254564599|ref|XP_002489410.1| Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family
           [Pichia pastoris GS115]
 gi|238029206|emb|CAY67127.1| Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family
           [Pichia pastoris GS115]
          Length = 482

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 164/380 (43%), Gaps = 81/380 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+K QE A+  +L + ++      I Q   G+GKT    + M + V+      QA+ ++P
Sbjct: 115 PSKIQEKALPLLLSNPARN----MIGQSQSGTGKTAAFSLTMLSRVDESKPVVQAICLSP 170

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ---AHIIIGTHALF 386
              LA+Q  E +++  + T+I  +++   +P+A        +  GQ   A+I++GT  L 
Sbjct: 171 ARELARQTLEVVQQMGKYTKITTQLV---VPEA--------VPRGQPVTANILVGTPGLT 219

Query: 387 QD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            D      I    + + ++DE      +Q L   Q       L  TA      LVL S  
Sbjct: 220 LDLIRRKQIDTSNVKVFVLDEADNMLDKQGLG-DQCVRVKKFLPQTAQ-----LVLFSAT 273

Query: 442 DIDISKITEKPAGRKPIKTVIIP-INRIDEVIERLKVVLSEG-KKAYWICPQIEEKKESN 499
             D  +   K AG+       +P  N ++   E L V   +G K+ Y  C    + +E  
Sbjct: 274 FPDEVR---KYAGK------FVPNANSLELKHEELNV---DGIKQLYMDC----DSQEHK 317

Query: 500 FRSVVERF------------------NSLHEHFTS---SIAIIHGRMSDIDKESVMDSFK 538
           F  + E +                  N L++       +++I+HG +   +++ ++D F+
Sbjct: 318 FDVLCELYGLLTIGSSIIFVQRKETANMLYKRMKDEGHTVSILHGDLESSERDRLIDDFR 377

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIEN--AEHFGLAQ----LHQLRGRVGRGEEISSC 592
            G  K+LI T V+  GID+   S+++  +   +  G A     LH++ GR GR   +   
Sbjct: 378 EGRSKVLITTNVLARGIDIASVSMVVNYDLPVDRQGNADPSTYLHRI-GRTGRFGRVGVS 436

Query: 593 ILLYHPPLSKNSYTRLSVLK 612
           I   H    + SY +L  ++
Sbjct: 437 ISFVH---DRTSYEQLMAIR 453


>gi|254706857|ref|ZP_05168685.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis
           M163/99/10]
 gi|254710035|ref|ZP_05171846.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis B2/94]
 gi|254714037|ref|ZP_05175848.1| ATP-dependent RNA helicase DDX17 [Brucella ceti M644/93/1]
 gi|254716905|ref|ZP_05178716.1| ATP-dependent RNA helicase DDX17 [Brucella ceti M13/05/1]
 gi|256031530|ref|ZP_05445144.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis M292/94/1]
 gi|261218712|ref|ZP_05932993.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261314321|ref|ZP_05953518.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261317582|ref|ZP_05956779.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261321790|ref|ZP_05960987.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|265988616|ref|ZP_06101173.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|260923801|gb|EEX90369.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261294480|gb|EEX97976.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261296805|gb|EEY00302.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261303347|gb|EEY06844.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|264660813|gb|EEZ31074.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
          Length = 482

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 147/347 (42%), Gaps = 61/347 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+    +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE----RKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +  KL+L     +++DE  R        +      P +  +    P  R TL  +
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADR--------MLDMGFIPDIERICKLIPFTRQTLFFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDE-VIERL---------------KVVLSEG 482
           +    +I+K+TE+     P++  +   +   + V +RL                ++ SEG
Sbjct: 186 ATMPPEITKLTEQFL-HSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEG 244

Query: 483 ---KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
              K A   C        +  + V E F SL  H   + A+ HG M    + +++ SFK+
Sbjct: 245 DSLKNAIIFC--------NRKKDVSELFRSLTRHEFDAGAL-HGDMDQRARMAMLSSFKD 295

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR 
Sbjct: 296 GKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRA 341


>gi|256088557|ref|XP_002580397.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665967|emb|CAZ36636.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 1500

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 131/312 (41%), Gaps = 43/312 (13%)

Query: 302  VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
             GSGKTL  L+ +   +E         G  A+++AP   LA Q ++  KK  Q       
Sbjct: 852  TGSGKTLAFLVPLMRHLEHQAPLNPGDGPIALLLAPTRELALQIFKETKKLCQAADARAV 911

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
             + G    + +   L+R     A II+ T     D +          ++   V++DE  R
Sbjct: 912  CVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAANGGRVTNLHRCSYVVLDEADR 967

Query: 406  ---FGVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                G + Q +++ +        LM +   PR + + +   + +           PI+  
Sbjct: 968  MFDLGFEPQVMRIIENCRPDRQTLMFSATFPRQMEILARKVLTL-----------PIEIQ 1016

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIE-EKKESNFRSVVERFNSLHE------HF 514
            I   + +   +E+   +LSE +K Y +   +   ++E +    VE+  S  E       +
Sbjct: 1017 IGGRSVVCSDVEQHAFILSEEEKVYKVLELLGIYQEEGSVLVFVEKQESADELMRVLLKY 1076

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                  +HG +   D++SV+  FK G  +LLIAT+V   G+DV D  ++I  +  +    
Sbjct: 1077 GYPCLSLHGGIDQYDRDSVIMDFKRGNIRLLIATSVAARGLDVTDLLLVINYDCPNHYED 1136

Query: 575  QLHQLRGRVGRG 586
             +H+  GR GR 
Sbjct: 1137 YVHRC-GRTGRA 1147


>gi|110678334|ref|YP_681341.1| DEAD-box ATP dependent DNA helicase [Roseobacter denitrificans OCh
           114]
 gi|109454450|gb|ABG30655.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Roseobacter
           denitrificans OCh 114]
          Length = 705

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 137/328 (41%), Gaps = 40/328 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQ-HYEFIKKYTQ 346
           ++    GSGKT+   +A+A  +         AG   A+I+AP   LAQQ   E    Y +
Sbjct: 43  LVSAQTGSGKTVGFGLAIAPTLLGEQEHFGPAGTPLALIIAPTRELAQQVARELSWLYAK 102

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVD 401
              +++  + G M     R+AL+R     AH+++ T     D     +I+   L  V++D
Sbjct: 103 AGAVVISCV-GGMDTRTERRALDR----GAHVVVATPGRLCDHIKRGNIELSGLRAVVLD 157

Query: 402 EQHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGR 455
           E       G ++ L+  L +  T    LL +AT +P+ +  L      D  +I      R
Sbjct: 158 EADEMLDLGFREELEFILDEAPTDRRTLLFSAT-VPKAIAKLAESYQRDAQRIETVSETR 216

Query: 456 KPIKTVIIPINRIDEVIERLKV-VLS--EGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           +        +N     +E   + VL   E K A   C         N R+ V R  +   
Sbjct: 217 QHADIEYRALNTHPRDVENAIINVLRFYEAKNAIVFC---------NTRAAVARLTTRFT 267

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   S+  + G ++  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 268 NRGFSVVALSGELTQSERSNALQALRDGRARVCVATDVAARGIDLPNLELVIHADLPSNS 327

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPL 600
              LH+  GR GR        L+  P L
Sbjct: 328 DTLLHR-SGRTGRAGRKGVSALIVPPKL 354


>gi|319424888|gb|ADV52962.1| primosomal protein N' [Shewanella putrefaciens 200]
          Length = 731

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 10/150 (6%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q +L   P    K Q  A+  + Q   Q+     +L+G  GSGKT V L  +   ++ G 
Sbjct: 192 QLVLDETPHRLNKEQAIAVTILNQ---QQGYHCTLLEGITGSGKTEVYLAVLEEILKQGK 248

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+I+ P IG+  Q    F +++  N  ++   +T N     R +A  +   GQA IIIG
Sbjct: 249 QALILVPEIGLTPQTINRFKRRFKVNVAVLHSGLTDN----QRLEAWRQARCGQAAIIIG 304

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           T +     + Y  +I  I+DE+H    +Q+
Sbjct: 305 TRSALFTPMAYPGMI--ILDEEHDSSFKQQ 332


>gi|145638750|ref|ZP_01794359.1| primosome assembly protein PriA [Haemophilus influenzae PittII]
 gi|145272345|gb|EDK12253.1| primosome assembly protein PriA [Haemophilus influenzae PittII]
 gi|309750240|gb|ADO80224.1| Primosomal protein N' putative [Haemophilus influenzae R2866]
          Length = 730

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/389 (20%), Positives = 157/389 (40%), Gaps = 94/389 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +++G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 222 LLDGVTGSGKTEIYLQYIEEILKSGKQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 277

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
             N+    R    +R   GQ+ I+IGT  ALF    Q+  L  +I+DE+H    +Q+   
Sbjct: 278 HSNLTDTQRLYVWDRARSGQSAIVIGTRSALF---TQFSNLGAIILDEEHDSSYKQQDSW 334

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                   + L QK     VL+ +ATP   ++     G      ++++      ++  +I
Sbjct: 335 RYHARDLAIVLAQKLNIA-VLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVI 393

Query: 464 PINRID-------EVIERLKVVLSEGKKAY------------------WI--CPQIEEKK 496
            +   +        ++ER+K  L +G +                    WI  CP  E+  
Sbjct: 394 DLKNQNIQNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPY 453

Query: 497 ESNFRSVVERFN----------------SLH--------EHFTSSIAII--HGRMSDIDK 530
             +    V R +                S H        E    ++  +  H  ++ ID+
Sbjct: 454 TYHQHQNVLRCHHCGAQKTIPRQCGDCGSTHLVTTGLGTEQLEETLKTLFPHYSVARIDR 513

Query: 531 ESV---------MDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHF 571
           +S          ++  + G  ++LI T ++           V +  VD+++  ++     
Sbjct: 514 DSTARKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNVDSALFSLDFRAEE 573

Query: 572 GLAQLH-QLRGRVGRGEEISSCILLYHPP 599
            LAQL+ Q+ GR GR ++    +L  H P
Sbjct: 574 RLAQLYIQVAGRAGRADKQGEVVLQTHYP 602


>gi|210633263|ref|ZP_03297728.1| hypothetical protein COLSTE_01641 [Collinsella stercoris DSM 13279]
 gi|210159181|gb|EEA90152.1| hypothetical protein COLSTE_01641 [Collinsella stercoris DSM 13279]
          Length = 238

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 12/199 (6%)

Query: 40  RFIDLLFYHPSSFID--RHYRPKISEISEERIVTITGYISQHSSFQLQKR--RPYKILLN 95
           R  DLL + P+ ++D  R Y  + + + E  + TI G I + S+    KR     ++ L 
Sbjct: 45  RVGDLLLHVPARYLDFSRAYSVESAPLGE--VCTIVGTIDRVSNRPTSKRGMTVTEVFLV 102

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL 155
           D TG + + FF  K   +      G ++ V GK++       M  PHY        +  +
Sbjct: 103 DATGVLKIAFF--KQPWIARELAVGERLAVIGKVEFAYGFKQMAAPHYERLEGDGASGTI 160

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
           +  V+ +  G+S    ++++  AL       + +   L  ++   S++ A   +  PR  
Sbjct: 161 LP-VHPVRDGVSQAWMRRLVSVALEGAGSFCDPVPAPLRSRRKLMSLSRAVRAVQFPRLM 219

Query: 216 KDFEWTSPARERLAYDELL 234
            +  +   AR+RLAYDELL
Sbjct: 220 PEVAF---ARKRLAYDELL 235


>gi|291616471|ref|YP_003519213.1| DbpA [Pantoea ananatis LMG 20103]
 gi|291151501|gb|ADD76085.1| DbpA [Pantoea ananatis LMG 20103]
          Length = 459

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 145/317 (45%), Gaps = 42/317 (13%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIK---KYTQNTQIIV 352
           Q   GSGKT    I +   +++     QA+I+ P   LA Q    ++   ++T+N +I+ 
Sbjct: 46  QAKTGSGKTAAFGIGLLQHIDSAHFQTQALILCPTRELADQVSNVLRQLARFTRNIKILT 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G  P + +R +L    H   HI++GT     D I+   L L     +++DE  R  
Sbjct: 106 --LCGGQPMSAQRDSL---VHA-PHIVVGTPGRILDHIKRETLKLESLRTLVLDEADRML 159

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             G +  ++           ++ ATP  R TL+ ++     I+ ++++   R+ +  V  
Sbjct: 160 EMGFRDDMET----------IIAATPASRQTLLFSATWPEGIAALSQR-FQREALSVVTE 208

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-------RSVVERFNSLHEHFTS 516
            ++ +   IE+  +  S G+K   +   + E++ S+        R   +   +L+    S
Sbjct: 209 EVSEL-PAIEQQFIEASHGEKLSLLISLLSERQPSSCVVFCNTKRECDDIAAALNARDIS 267

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++ + HG +   D+E V+  F NG+ ++L+AT V   G+D+   S+++           L
Sbjct: 268 ALPL-HGDLEQRDRERVLIRFANGSGRVLVATDVAARGLDIKLLSLVVNYQLAWDPEVHL 326

Query: 577 HQLRGRVGRGEEISSCI 593
           H++ GR  R  E  + +
Sbjct: 327 HRI-GRTARAGEQGAAV 342


>gi|300773838|ref|ZP_07083707.1| ATP-independent RNA helicase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760009|gb|EFK56836.1| ATP-independent RNA helicase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 434

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 126/313 (40%), Gaps = 50/313 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    G+GKTL  L+A + + +    G Q +++AP   LAQQ     KK     +++  
Sbjct: 33  ILLSPTGTGKTLAFLLAASYSFDTTKKGPQCLVLAPTRELAQQIESVSKKVFHGKRVVC- 91

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ--------DSIQYYKLILVIVDEQHR 405
              G       R AL+        IIIGT             D+ Q + LIL   D+   
Sbjct: 92  -CYGGHSTREERTALKH----APDIIIGTPGRIAYHLRSENLDTAQLHSLILDEFDKSLE 146

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGD-IDISKITEKPAGRKPIKTVI 462
           FG Q+ +   + Q       +L +AT +      T + + + I  +    A         
Sbjct: 147 FGFQEDMSFIIDQLPVLKQHILTSATQMEEIPSFTGISNALTIDYLDNSDAA-------- 198

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---SNFRSVVERFNSL-------HE 512
            P   I +VI R K  L   +  + +  QI  K+     N R  V+  + L       H+
Sbjct: 199 -PDLTIKKVICRPKEKL---RTLFNLICQIGNKRMLIFCNHRDAVDHISELLMDRELIHD 254

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
            F       HG M   D+E  +  F+NGT ++LI T +   G+D+ +   II     +  
Sbjct: 255 AF-------HGGMEQADRELTLLKFRNGTSQILITTDLAARGLDIPEIDSIIHYQLPYKE 307

Query: 573 LAQLHQLRGRVGR 585
            A +H+  GR  R
Sbjct: 308 DAFVHR-NGRTAR 319


>gi|71082939|ref|YP_265658.1| primosomal protein N [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062052|gb|AAZ21055.1| probable primosomal protein N [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 651

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 11/165 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +K Q++++K  +  ++QK R+  +LQG  GSGKT+V   A+   ++ G Q +I+ P IG+
Sbjct: 124 SKEQKNSLKK-MNVLNQKFRV-HVLQGTTGSGKTMVYFEALKEIIDKGFQGLILLPEIGL 181

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q   +FI+ +     +    IT    + ++      IA+ +  ++IG   +LF   + 
Sbjct: 182 TGQFQNKFIEFFGFKPAVWHSGIT----KKNKEIIWSGIANDKIKVVIGARSSLF---LP 234

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           + KL L+IVDE+H    +Q   +T  A    +   +   IP  L+
Sbjct: 235 FKKLGLIIVDEEHDQSYKQDEGVTYNARDMAISRASFENIPINLI 279


>gi|254473911|ref|ZP_05087305.1| dead-box ATP-dependent rna helicase 53 [Pseudovibrio sp. JE062]
 gi|211957021|gb|EEA92227.1| dead-box ATP-dependent rna helicase 53 [Pseudovibrio sp. JE062]
          Length = 607

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 137/337 (40%), Gaps = 43/337 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV----EAGGQA-----VIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   IA+A  +    E  G+A     + +AP   LA Q  + ++     
Sbjct: 41  LVSAQTGSGKTVAFGIAIAPELLGDEERMGRANEPLALCVAPTRELAIQVSKELEWLYGE 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVI 399
               +    G M     R+ L       AHI++GT    +D I+           ++L  
Sbjct: 101 AGARITTCVGGMDMRRERRNL----SAGAHIVVGTPGRLRDHIERGSFDTSALRTVVLDE 156

Query: 400 VDEQHRFGVQQRLKLTQKATAPH---VLLMTATPIPRTLVLTSLGDIDISKIT-----EK 451
            DE    G ++ L+    A AP     LL +AT  P+   L      D  +I+     E+
Sbjct: 157 ADEMLDLGFREDLEFILDA-APEERRTLLFSATVPPQIESLAKRFQRDAQRISTVTNREQ 215

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            A  +     + P +R + +I  L+    E +     C           R +V+  ++  
Sbjct: 216 HADIEYRAMQVAPNDRENAIINVLR--FYEAQNTIIFC---------GTREMVKHLSARL 264

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            +   ++  + G +S  ++   + + +NG  ++ +AT V   GID+ +  ++I  +  + 
Sbjct: 265 GNRGFAVVALSGELSQAERNHALGAMRNGRARVCVATDVAARGIDLPNLDLVIHADLPNN 324

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
               LH+  GR GR      C L+  P   + S TRL
Sbjct: 325 AETLLHR-SGRTGRAGRKGVCTLVV-PHTRRRSATRL 359


>gi|270016295|gb|EFA12741.1| Rm62 [Tribolium castaneum]
          Length = 776

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 135/343 (39%), Gaps = 51/343 (14%)

Query: 302 VGSGKTLVALIAM--------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++          + A   G  A+++AP   LAQQ  +    +  ++ +   
Sbjct: 173 TGSGKTLAYILPAIVHINNQPSIARGDGPIALVLAPTRELAQQIQQVAHDFGSSSYVRNT 232

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF-- 406
            I G  P+  + + LER       I I T       L + +    +   +++DE  R   
Sbjct: 233 CIFGGAPKGPQARDLER----GVEICIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 288

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    R  V  ++G + +S      A
Sbjct: 289 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVRKLAQDFLRNYVQINIGSLQLS------A 342

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSE----GKKAYWICPQIEEKKESNFRSVVERFNS 509
               ++  I+ + +  E   +L  +L E    G+    I   +E KK+      VE    
Sbjct: 343 NHNILQ--IVDVCQEHEKETKLNNLLQEIGNNGEPGAKIIIFVETKKK------VESITR 394

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
               +      +HG  S  +++ V+  F+NG   +LIAT V   G+DV     +I  +  
Sbjct: 395 TIRRYGWPAVCMHGDKSQQERDFVLREFRNGKSSILIATDVAARGLDVEGIKYVINYDYP 454

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     +H++ GR GR +   +    + P   + +   +SVLK
Sbjct: 455 NSSEDYIHRI-GRTGRSDTTGTSYAFFTPSNFRQAKDLVSVLK 496


>gi|238853039|ref|ZP_04643432.1| superfamily II DNA and RNA helicase [Lactobacillus gasseri 202-4]
 gi|238834337|gb|EEQ26581.1| superfamily II DNA and RNA helicase [Lactobacillus gasseri 202-4]
          Length = 411

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 124/307 (40%), Gaps = 28/307 (9%)

Query: 302 VGSGKTLV-ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G+GKTL   L  M    E GG+ VI+ P   LA Q    +  Y +   +    + G   
Sbjct: 41  TGTGKTLAYGLPVMERIDEIGGRGVILEPTTELAIQTRNNLLPYAKALGLKTVALVG--- 97

Query: 361 QAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
             +R++ LER+   +  III T   F     ++ I+Y  +  +++DE        +L L 
Sbjct: 98  AGNRKRQLERLKKEKPEIIIATPGRFFDFLSENRIKYQDINALVIDEADDILEFAKLDLL 157

Query: 416 QK-----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
                  ++   +LL  A+    T     L +     +  +P  +  +K   + ++   +
Sbjct: 158 SSLGQNLSSTAQILLFGASESEVTKNAEDLFNHTFLLVDVRPEQKSEVKHYFLQVSNEYK 217

Query: 471 V--IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
           +  ++RL  +       ++   + E            RF  +  H  +  A++    S  
Sbjct: 218 MQFLQRLAKLDKFKGILFFDSTETEM-----------RFARIFSHSKTKFAVLSNETSKQ 266

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           ++E ++  FK G  K L AT +   G+D+ D S +I           LH+  GR GR  +
Sbjct: 267 NREKLLSDFKAGRIKFLFATDLAARGLDLPDVSYVINFEIPSEVNTYLHR-SGRTGRMNK 325

Query: 589 ISSCILL 595
             + + L
Sbjct: 326 SGTVVTL 332


>gi|300794325|ref|NP_001179891.1| ATP-dependent RNA helicase DDX3X [Bos taurus]
 gi|297493243|ref|XP_002700250.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Bos
           taurus]
 gi|296470612|gb|DAA12727.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Bos taurus]
          Length = 661

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 129 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 183

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 184 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 237

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 238 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 297

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 298 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 353

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 354 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 412

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 413 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 465

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 466 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 513


>gi|330822482|ref|XP_003291680.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum]
 gi|325078116|gb|EGC31785.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum]
          Length = 397

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 130/312 (41%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I     ++      QA+I++P   LAQQ  +     ++   + V 
Sbjct: 64  IAQAQSGTGKTATFSIGALQCIDVNVRSPQALILSPTRELAQQIQKVALALSEYMNVQVH 123

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G    +   K LE       HI+ GT     D I    L        IL   DE   
Sbjct: 124 ACVGGKNMSDDIKKLET----GVHIVSGTPGRVLDMITRKSLSTRHIKMMILDEADEMLS 179

Query: 406 FGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G QQ++    +    A  ++L++AT       LT     D+  +TEK    KP++   I
Sbjct: 180 LGFQQQINDVYRYLPEATQIVLVSAT-------LTQ----DVVTMTEKFMS-KPVR---I 224

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  ++ +K      +K  W    + +  +S          N +  V++       
Sbjct: 225 LLKRDELTLDGIKQFFVSVEKEEWKFGTLCDIYDSLTITQAVIFCNTKKKVDQLTEKMRE 284

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              ++A +HG M   ++E ++ SF++G  ++LI T ++  GIDV   S++I  +      
Sbjct: 285 ANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRE 344

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 345 NYLHRI-GRSGR 355


>gi|312376077|gb|EFR23272.1| hypothetical protein AND_13185 [Anopheles darlingi]
          Length = 621

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 158/395 (40%), Gaps = 69/395 (17%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIP-FSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +LL  ++FK       ++EGK++   LR I     TK  E   K I   +  ++    + 
Sbjct: 120 VLLGNQEFK-------SLEGKVSDNTLRAIAEMGFTKMTEIQAKSIPPLLEGRDL---VG 169

Query: 299 QGDVGSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
               GSGKTL  LI     +         G  A+I++P   LA Q +  +K+   +    
Sbjct: 170 SAKTGSGKTLAFLIPAVELIHKLRFKPRNGAGAIIISPTRELAMQIFGVLKELMAHHHQT 229

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHR 405
             ++ G    A R    E++  G  +II+ T     D ++      Y  L  +I+DE  R
Sbjct: 230 YGLLMGG---ASRHTENEKLGKG-LNIIVATPGRLLDHLKSTPNFLYKNLQCLIIDECDR 285

Query: 406 F---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
               G ++ LK           +++  P  R  +L S      S++ E   GR  +K+  
Sbjct: 286 ILEIGFEEDLKQ----------IISILPKKRQTLLFSA--TQSSRLDE--LGRLALKSEP 331

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---------KESNFRSVVERFNSL--- 510
           I +   D   E     L +G   Y +CP   EK         K++  + V+  F+S    
Sbjct: 332 IYVGVDDNKTEATVTGLEQG---YIVCPS--EKRLLVLFTFLKKNRKKKVMVFFSSCLSV 386

Query: 511 ---HEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              HE F      +  IHG+     + SV   F N    +L+ T V   G+D+     I+
Sbjct: 387 KFHHELFNYIDLPVQSIHGKQKQAKRTSVFFQFCNAESGILLCTDVAARGLDIPAVDWIV 446

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             +  +     +H++ GR  RGE +    LL   P
Sbjct: 447 QYDPPNDTKEYIHRV-GRTARGENLCGHALLILRP 480


>gi|224551506|gb|ACN54195.1| Ddx3y [Bos taurus]
          Length = 635

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 166/397 (41%), Gaps = 78/397 (19%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-------------IAQKILRNI 269
           P  ERL  +    G   +      F+K   IP+ V G              + + I+ NI
Sbjct: 141 PPSERLEQELFSGGNTGI-----NFEKYDDIPVEVTGNNCPPHIESFSDVAMGEIIMGNI 195

Query: 270 PFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI------------- 312
             +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+             
Sbjct: 196 ELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPILSQIYTDGPGE 249

Query: 313 AMAAAVEAG--GQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           A+ A  E+G  G+      ++++AP   LA Q YE  +K++  ++++  ++ G      +
Sbjct: 250 ALKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVYGGADIGQQ 309

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKL 414
            + LER      H+++ T     D ++  K+ L     +++DE  R     F  Q R  +
Sbjct: 310 IRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRII 365

Query: 415 TQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINR 467
            Q    P    H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  
Sbjct: 366 EQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEE 424

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
            D+    L ++ + G  +  +   +E KK ++    +E F   HE +  +   IHG  S 
Sbjct: 425 ADKRSFLLDLLNATGTDSLTLV-FVETKKGAD---SLEDF-LYHEGY--ACTSIHGDRSQ 477

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 478 RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|195326563|ref|XP_002029995.1| GM24810 [Drosophila sechellia]
 gi|194118938|gb|EDW40981.1| GM24810 [Drosophila sechellia]
          Length = 854

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 157/351 (44%), Gaps = 59/351 (16%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQ 323
           RN   +PTK Q +AI   L ++        I+Q   G+GKTL+ +IA+  + +       
Sbjct: 42  RNNFVTPTKIQAAAIPMALANID------LIIQSKSGTGKTLIYIIAVVQSFQPNMNRPH 95

Query: 324 AVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           A+++ P   LA Q    F++              G    A  R  +      ++ +IIGT
Sbjct: 96  AMVIVPTRELAIQVQDTFVQLCKSFRDFKCSAFIGGTEVAKDRSRM-----NESRVIIGT 150

Query: 383 HA----LFQDSI-QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL--LMTATPIPRTL 435
                 L+++ +    KL L+++DE          +L Q  +  H +  L+ A P  R +
Sbjct: 151 PGRLLHLYENRVLDVSKLRLLVLDEAD--------QLYQTKSLQHTVSKLIEAMPKNRQI 202

Query: 436 VLTSLG---DID--ISKITEKPA--GRKPIKTVIIPI-----------NRIDEVIERLKV 477
           +  S     D+D  ++K+ +KP         TV++ I           N ++E+  +L++
Sbjct: 203 IACSATYDKDLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRLKLQI 262

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534
           +   G+    I  Q+  ++   F S   R +S   + T+S     +I G M   ++  V 
Sbjct: 263 L---GQ----IFSQLPYEQAIIFASSQMRADSYKNYLTASGVDCHLISGAMEQSERLHVF 315

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           + ++N T ++L+AT ++  G+D   A+++I  +     +  LH++ GR GR
Sbjct: 316 EGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRI-GRAGR 365


>gi|315645365|ref|ZP_07898490.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315279407|gb|EFU42713.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 506

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 131/294 (44%), Gaps = 45/294 (15%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A++++P   LA Q  + +K Y+Q T++    I G + Q  + +AL++     A I+I T
Sbjct: 93  RALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERALQQ----GADILIAT 148

Query: 383 HA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTAT-PI 431
                  + Q  I    + ++++DE  R    G    +K  +++  +    L  +AT P 
Sbjct: 149 PGRLLDLMNQKRIDLQHVEILVLDEADRMLDMGFIHDVKRIISKMPSKKQTLFFSATMPA 208

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
             T ++ +L              + P+K  I P++   E I++   +L  G K   +   
Sbjct: 209 EITQLVKTLL-------------QNPVKVEITPVSSTAERIKQSVYLLETGNKQKQLN-- 253

Query: 492 IEEKKESNFRSVV---------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            E  K+ +  S +         +R          +   IHG  S + +++ + +FK+G  
Sbjct: 254 -ELMKDPSIVSALVFTRTKRGADRVVRDLTKVNITAQAIHGNKSQVSRQTALKNFKSGET 312

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           ++L+AT +   GID+ + S +I  N  +     +H++ GR GR    G  IS C
Sbjct: 313 RVLVATDIAARGIDIDELSHVINFNLPNIPETYVHRI-GRTGRAGLSGTAISFC 365


>gi|301755322|ref|XP_002913508.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like [Ailuropoda
           melanoleuca]
          Length = 654

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 413

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 414 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 466

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|254447341|ref|ZP_05060807.1| primosomal protein N' [gamma proteobacterium HTCC5015]
 gi|198262684|gb|EDY86963.1| primosomal protein N' [gamma proteobacterium HTCC5015]
          Length = 731

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 117/257 (45%), Gaps = 44/257 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V    +   +  G QA+++ P IG+  Q     +++++Q  +  + ++
Sbjct: 224 LLRGVTGSGKTEVYFRWIERCLAQGRQALVLVPEIGLTPQ----LLERFSQRFEANLVVL 279

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
              M    R ++ +  A G+AHI++GT  ALF        L L+++DE+H          
Sbjct: 280 HSGMTDLERLRSWQLAAAGRAHIVLGTRSALF---TPMPALGLIVIDEEHDASFKQQEGF 336

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP--IKTVI 462
           R+  +    L  +A A  ++L TATP   +      G     +++++  G +P  I+ V 
Sbjct: 337 RYHARDLAALRAQAEAIPLILGTATPSFESHHNVRQGRYRELRLSQRAGGARPPIIRMVD 396

Query: 463 IPINR--------IDEVIERL-----KVVLSEGKKAY---WICPQIEEKKESNFRSVVER 506
              +R        +D  +E+      +V+L   ++ Y    ICPQ        + S  ER
Sbjct: 397 ARQHRSGSPLSHSLDRAVEQHLAAGNQVMLFLNRRGYAPTLICPQC------GWHSDCER 450

Query: 507 FNS-LHEHFTSSIAIIH 522
            ++ +  HF  S+   H
Sbjct: 451 CDAHMTLHFQPSVLRCH 467


>gi|194227826|ref|XP_001491482.2| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box
           protein 3, X-chromosomal) (Helicase-like protein 2)
           (HLP2) (DEAD box, X isoform) [Equus caballus]
          Length = 762

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 230 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 284

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 285 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 338

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 339 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 398

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 399 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 454

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 455 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 513

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 514 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 566

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 567 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 614


>gi|315651131|ref|ZP_07904163.1| primosomal protein N' [Eubacterium saburreum DSM 3986]
 gi|315486596|gb|EFU76946.1| primosomal protein N' [Eubacterium saburreum DSM 3986]
          Length = 741

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/409 (19%), Positives = 153/409 (37%), Gaps = 93/409 (22%)

Query: 277 QESAIKDILQ-DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILA 334
           ++  + DI + D     R   +L G  GSGKTLV +  +   +  G QA+++ P I +  
Sbjct: 216 EQKQVTDIFKTDFCTGERNTYLLHGITGSGKTLVFINMIKYVISNGLQAIVLIPEISLTY 275

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           Q     ++ +       V II   + +  +    +RI    A +IIG  +     ++  +
Sbjct: 276 QTVLRMVEYFGDR----VAIINSKLSKNEKFYQFDRIKKDDADVIIGPRSAIFAPVK--R 329

Query: 395 LILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L L+++DE+H           F ++       K     ++L +ATP P T      G+I 
Sbjct: 330 LGLIVIDEEHDSAYKNESVPTFNIRDVAGKLAKIAGASLILASATPTPETYNRAINGEIK 389

Query: 445 ISKITEKPAGRKPIKTVIIPI-------------NRIDEVIE-RLK----VVLSEGKKAY 486
           + ++ ++       K  I+ +             N++  +IE RL+    V+L   ++ Y
Sbjct: 390 LLELKKRAKNTSLPKVSIVDMRDELKRGNRSIFSNKLKTLIEDRLRKHEQVMLFMNRRGY 449

Query: 487 W------------------------------------------ICPQIEEKKESNFRSVV 504
                                                      +CP    K  +NF +  
Sbjct: 450 SSFVSCRFCGEAIKCKHCDVTMTLHNNNKLICHYCGYSVDLPKVCPSCGSKYIANFGTGT 509

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKES----VMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           ++   +      +  ++      + K++    ++  F  G   +LI T +I  G D  + 
Sbjct: 510 QKLEVMTREVFPNAKVLRMDTDSVSKKNSANDMIRDFARGDADILIGTQMIVKGHDFDNV 569

Query: 561 SIIIIENAE------HFGLAQ-----LHQLRGRVGRGEEISSCILLYHP 598
           +++ I  A+      ++  AQ     L Q  GR GR +   + I  Y P
Sbjct: 570 TLVGIMAADTSLYVSNYNSAQRTFELLTQAAGRAGRAKTGEAVIQTYKP 618


>gi|74006728|ref|XP_850382.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 2 [Canis familiaris]
          Length = 663

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 413

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 414 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 466

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|126176035|ref|YP_001052184.1| primosomal protein N' [Shewanella baltica OS155]
 gi|125999240|gb|ABN63315.1| primosomal protein N' [Shewanella baltica OS155]
          Length = 731

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 19/191 (9%)

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNT 348
           Q+     +L+G  GSGKT V L  +   ++ G QA+I+ P IG+  Q    F +++  N 
Sbjct: 216 QQGYHCTLLEGITGSGKTEVYLAVLEEILKQGKQALILVPEIGLTPQTINRFKRRFKVNV 275

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            I+   +T N     R +A  +   GQA IIIGT +     + Y  +I  I+DE+H    
Sbjct: 276 AILHSGLTDN----QRLEAWRQARCGQAAIIIGTRSALFTPMAYPGII--ILDEEHDSSF 329

Query: 409 QQRLKLTQKA-----------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +Q+  +   A           + P V+L TATP   +L     G     ++ E+    K 
Sbjct: 330 KQQEGVGYHARDLAVMRGHLESIP-VILGTATPSLESLQNALSGRYHHLQLDERAGAAKK 388

Query: 458 IKTVIIPINRI 468
           ++  II I  +
Sbjct: 389 VRQGIIDIKNM 399


>gi|321476533|gb|EFX87493.1| hypothetical protein DAPPUDRAFT_306483 [Daphnia pulex]
          Length = 805

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 146/368 (39%), Gaps = 65/368 (17%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----- 318
           ++R   F+ PT  Q  AI   L        ++ I Q   GSGKT   L  M   +     
Sbjct: 314 VIRKSEFTNPTPIQSQAIPAALSGRD----VIGIAQ--TGSGKTAAFLWPMIVHILDQPD 367

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +I+AP   L+QQ Y   KK+ +   I V    G   +  + K LE+     
Sbjct: 368 LKPGDGPIGLILAPTRELSQQIYTEAKKFCKVFGISVVCCYGGGSKWEQSKDLEQ----G 423

Query: 376 AHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAP--HVLL 425
           A I++ T     D     +    ++  +++DE  R    G + +++       P    LL
Sbjct: 424 AEIVVATPGRMIDLVKIKATNLQRVTFLVLDEADRMFDMGFEPQVRSICNHARPERQTLL 483

Query: 426 MTAT-------------PIPRTLVLTSLGDI--DISKITEKPAGRKPIKTVIIPINRIDE 470
            +AT               P  +V   +G+   D++++ E          VI P  +   
Sbjct: 484 FSATFKKRIEKLARDVLSDPIRIVQGDVGEANQDVTQVIE----------VIAPTAKYSW 533

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           +I RL   ++ G    ++       K++N     E  ++  +    S+A++HG M  +D+
Sbjct: 534 LITRLVEFMASGSVLIFVT------KKAN----AEELSASLKSRELSVALLHGDMDQVDR 583

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             V+ SFK     +L+AT V   G+D+     ++  +         H++ GR GR  E  
Sbjct: 584 NQVISSFKKKEMDILVATDVAARGLDIPHIRTVVNYDIARDIDTHTHRI-GRTGRAGEKG 642

Query: 591 SCILLYHP 598
           +   L  P
Sbjct: 643 TAYTLVTP 650


>gi|297303643|ref|XP_001095294.2| PREDICTED: ATP-dependent RNA helicase DDX3X [Macaca mulatta]
          Length = 738

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 227 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 281

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 282 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 335

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 336 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 395

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 396 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 451

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 452 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 510

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 511 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 563

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 564 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 611


>gi|15894071|ref|NP_347420.1| ATP-dependent RNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15023670|gb|AAK78760.1|AE007593_8 ATP-dependent RNA helicase, superfamily II [Clostridium
           acetobutylicum ATCC 824]
 gi|325508198|gb|ADZ19834.1| ATP-dependent RNA helicase, superfamily II [Clostridium
           acetobutylicum EA 2018]
          Length = 374

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 136/322 (42%), Gaps = 45/322 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I +   G+GKTL  L+ +   +    +  QA+I+ P   LA Q  E   K  +   I + 
Sbjct: 42  IGEAQTGTGKTLAFLLPIFENISPTLSAVQALIVTPTRELALQITEQALKLKEAKDINIL 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGV 408
              G    A ++K L     G  H+II T     D IQ       KL   ++DE      
Sbjct: 102 AAYGGKDIASQQKKL----RGSTHLIIATPGRLLDLIQRKTVDLRKLKSFVLDE-----A 152

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            Q L +  K     +L     P  R ++  S     IS   +K A R     + I   + 
Sbjct: 153 DQMLLMGFKNDVEEIL--KNAPKKRQMLCFS---ATISPAVKKLAYRYMTNPLTISTKKK 207

Query: 469 D---EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS---S 517
           +   E IE+  V  ++ KK   +C  +  K+++ F +++      R + L          
Sbjct: 208 EVTLENIEQFVVETTDRKKLEDLCTAL--KQDNPFMAIIFGRTKRRVDELEVELYRRGFD 265

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGL 573
              +H  ++   +E +M SF+NG  + L+AT V   G+D+   S I    + +N E +  
Sbjct: 266 CQKLHSDLTQTKRERIMKSFRNGDFQYLLATDVASRGLDISGVSHIYNYDVPDNPESY-- 323

Query: 574 AQLHQLRGRVGR-GEEISSCIL 594
             +H++ GR GR GEE  +C+ 
Sbjct: 324 --IHRI-GRTGRAGEEGYTCLF 342


>gi|306843833|ref|ZP_07476431.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
 gi|306275911|gb|EFM57627.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
          Length = 482

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 147/346 (42%), Gaps = 61/346 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+    +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE----RKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +  KL+L     +++DE  R        +      P +  +    P  R TL  +
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADR--------MLDMGFIPDIERICKLIPFTRQTLFFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDE-VIERL---------------KVVLSEG 482
           +    +I+K+TE+     P++  +   +   + V +RL                ++ SEG
Sbjct: 186 ATMPPEITKLTEQFL-HSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEG 244

Query: 483 ---KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
              K A   C        +  + V E F SL  H   + A+ HG M    + +++ SFK+
Sbjct: 245 DTLKNAIIFC--------NRKKDVSELFRSLTRHEFDAGAL-HGDMDQRARMAMLSSFKD 295

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR
Sbjct: 296 GKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGR 340


>gi|242399022|ref|YP_002994446.1| ATP-dependent RNA helicase, DEAD-family [Thermococcus sibiricus MM
           739]
 gi|242265415|gb|ACS90097.1| ATP-dependent RNA helicase, DEAD-family [Thermococcus sibiricus MM
           739]
          Length = 382

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 147/341 (43%), Gaps = 55/341 (16%)

Query: 290 QKNRMLRILQGD--------VGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHY 338
           QK  + R+L+GD         G+GKT    + +   ++      QA+++ P   LA Q  
Sbjct: 28  QKEVIPRLLRGDNDIIGQSQTGTGKTAAFALPLIELIDEEIKEVQAIVITPTRELAIQVA 87

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL- 397
           + I+      +I V  + G  P   + + L R      HI++GT     D I+   L L 
Sbjct: 88  DEIRSLRGKRRINVLPVYGGQPIGPQIRNLRR----GVHIVVGTPGRVIDHIERGTLSLD 143

Query: 398 ----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTS---LGDIDI 445
                I+DE  R    G  + ++  L   +    VL+ +AT IPR ++  +   L D ++
Sbjct: 144 GVSYFILDEADRMLDMGFIEDIERILRHTSEEKRVLMFSAT-IPREILRLARRYLKDYEV 202

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            +I ++          + P     E++E++   +   K+   +C  ++EK   +F  +V 
Sbjct: 203 IRIQDRS---------LAP-----ELVEQIYFEVRPNKRFSLLCSILDEK---DFYGIVF 245

Query: 505 -------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                      S  +    S+  ++G +    +E +++ F+ G  ++L+AT V   GIDV
Sbjct: 246 CQTKRETRELASKLKTKGYSVEALNGDIPQKGRERILERFRKGKIRVLVATDVAARGIDV 305

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            D + +I  +      A +H++ GR GR  +    I    P
Sbjct: 306 KDLTHVINYSIPQNPEAYVHRI-GRTGREGKRGKAITFVAP 345


>gi|45382259|ref|NP_990158.1| probable ATP-dependent RNA helicase DDX5 [Gallus gallus]
 gi|5114446|gb|AAD40318.1|AF158370_1 DEAD-box RNA helicase [Gallus gallus]
          Length = 595

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 137/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y++  ++   
Sbjct: 128 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKST 187

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 188 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLD 243

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  V  ++G +++S      A
Sbjct: 244 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELS------A 297

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + D++I  ++ ++SE           +E K   F     R + L 
Sbjct: 298 NHNILQIVDVCHDVEKDDKLIRLMEEIMSE-----------KENKTIVFVETKRRCDDLT 346

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 347 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 406

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 407 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVNDLISVLR 449


>gi|330448478|ref|ZP_08312126.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492669|dbj|GAA06623.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 494

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 145/348 (41%), Gaps = 56/348 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVG--SGKTLVALIAMAAAVEAGG---QAVIM 327
           P+  QE AI  IL+       ++   Q   G  +G TL  L  +A    A     +A+++
Sbjct: 24  PSPIQEKAIPAILEGKD----VMAAAQTGTGKTAGFTLPLLERLAGGCPARSNHVRALVL 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHIIIGTHA 384
            P   LA Q  E +  Y +N +I   ++ G +   PQ  R +    +       ++  H+
Sbjct: 80  TPTRELAAQVGESVATYGKNLRISSAVVFGGVKVNPQMLRMRKGADVLVATPGRLMDLHS 139

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
             Q+++++  + ++++DE  R      ++  +K       ++   P  R  +L S    D
Sbjct: 140 --QNAVKFRDIEILVLDEADRMLDMGFIRDIRK-------ILALLPKERQNLLFSATFSD 190

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-------- 496
             +   K     P++  + P N+    +++            WICP  ++KK        
Sbjct: 191 EIRELAKGLVNDPVEIDVNPRNQTARTVKQ------------WICPVDKKKKPNLLTKLL 238

Query: 497 -ESNFRSVV------ERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            E N++ V+         N L  H  S   + A IHG  S   +   + +FK G  ++L+
Sbjct: 239 SERNWKQVLVFTKTKHGANKLSAHLESRGITAAAIHGNKSQGARTKALANFKAGEIRVLV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
           AT +   G+D+     ++  +  H     +H++ GR GR    GE IS
Sbjct: 299 ATDIAARGLDIDQLPQVVNFDLPHVAEDYVHRI-GRTGRAGCEGEAIS 345


>gi|163843207|ref|YP_001627611.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
 gi|163673930|gb|ABY38041.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
          Length = 482

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 147/347 (42%), Gaps = 61/347 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+    +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE----RKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +  KL+L     +++DE  R        +      P +  +    P  R TL  +
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADR--------MLDMGFIPDIERICKLIPFTRQTLFFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDE-VIERL---------------KVVLSEG 482
           +    +I+K+TE+     P++  +   +   + V +RL                ++ SEG
Sbjct: 186 ATMPPEITKLTEQFL-HSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEG 244

Query: 483 ---KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
              K A   C        +  + V E F SL  H   + A+ HG M    + +++ SFK+
Sbjct: 245 DSLKNAIIFC--------NRKKDVSELFRSLTRHEFDAGAL-HGDMDQRARMAMLSSFKD 295

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR 
Sbjct: 296 GKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRA 341


>gi|126632201|gb|AAI33101.1| Ddx46 protein [Danio rerio]
          Length = 1032

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 134/311 (43%), Gaps = 43/311 (13%)

Query: 302 VGSGKTLVALIAMAAAV-------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+  L+ M   +       EA G  AVIM P   LA Q  +  KK++++  + V 
Sbjct: 400 TGSGKTIAFLLPMFRHILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVV 459

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G    + +   L+R     A II+ T     D +           ++  V++DE  R
Sbjct: 460 CVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADR 515

Query: 406 F---GVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
               G + Q +++          +M +   PRT+   +L    +SK  E   G + +   
Sbjct: 516 MFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRTM--EALARRILSKPVEVQVGGRSV--- 570

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS 517
                 +   +E+  +V+ E KK   +   +   +E      F    E  + L +    +
Sbjct: 571 ------VCSDVEQHVIVIEEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKA 624

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 +HG +   D++S+++ FKNG C+LL+AT+V   G+DV    +++  +  +    
Sbjct: 625 SYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSCPNHYED 684

Query: 575 QLHQLRGRVGR 585
            +H+  GR GR
Sbjct: 685 YVHRA-GRTGR 694


>gi|124486390|ref|YP_001031006.1| NADPH-dependent F420 reductase [Methanocorpusculum labreanum Z]
 gi|124363931|gb|ABN07739.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
           Z]
          Length = 903

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 141/338 (41%), Gaps = 50/338 (14%)

Query: 302 VGSGKTLVALIA-MAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITG-- 357
             SGKT +  +A +   +E  G+ + + P+  LA Q Y+ F +KY   TQ    I+TG  
Sbjct: 236 TASGKTFIGEMAGLKNYIEKRGRMLFLVPLVALANQKYDRFSEKYKSVTQ--TSIMTGVS 293

Query: 358 --NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDE--------- 402
             N+P+   R    R A G   I++GT+     L +  +    +  V++DE         
Sbjct: 294 RVNLPET--RPVGNRGAGG--GIVVGTYEGMDNLLRKGMPVSNIGTVVIDEVQMLEDPER 349

Query: 403 QHRF-GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI--- 458
            HR  G+  RLK    A     L ++AT     L+   L    +S      A  + +   
Sbjct: 350 GHRLDGLIARLKYV--APKAQFLYLSATIGSPNLLAKKLNAALVSYADRPVALERHLIFT 407

Query: 459 -KTVIIP-INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            K   IP I ++  V E      S+G K   I           F +   R +++ E    
Sbjct: 408 EKDGKIPFIKKL--VFEEFNKTSSKGYKGQTIV----------FTNARSRCHTIAEAIGG 455

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA---EHFGL 573
             A  H  ++  ++ +V   F+ G    ++ T  +  G+D   + +I    A   +   +
Sbjct: 456 MAAPYHAGLTSQERRAVERQFEEGKLACVVTTAALAAGVDFPASQVIFDALAMGIDWLSV 515

Query: 574 AQLHQLRGRVGRGE--EISSCILLYHPPLSKNSYTRLS 609
            + HQ+ GR GR +  ++   ++L  P +S +  T+L+
Sbjct: 516 QEFHQMMGRAGRPDFHDLGRVVVLAEPGVSYSRETKLT 553


>gi|330834348|ref|YP_004409076.1| DNA repair helicase RAD25 [Metallosphaera cuprina Ar-4]
 gi|329566487|gb|AEB94592.1| DNA repair helicase RAD25 [Metallosphaera cuprina Ar-4]
          Length = 538

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 134/335 (40%), Gaps = 73/335 (21%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GKTLV +   A  VE GG A+I++      +Q  E I KYT N   I    +     
Sbjct: 180 TGAGKTLVGI---AGIVETGGPALIVSFTNEQLKQWEESIAKYTSNQPKIGLYYS----- 231

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RRK +E I        I  H    D +  +KL+  I+DE H    ++  ++     AP
Sbjct: 232 --RRKDIEPITITTYQTAI-KHI---DKLSMFKLL--IIDEAHHLPAERFREIALSCLAP 283

Query: 422 HVLLMTATPI----PRTLVLTSLGDIDISK-----ITEKPAGRKPIKTVIIPINRIDEVI 472
             + ++ATP         +   +G +   K     + E    R  +  V IP+   +E  
Sbjct: 284 FRMGLSATPYRTDGKHVELFRLMGGLVYQKGVEELVVEGYLARFKVIRVKIPLT--EEEA 341

Query: 473 ERLKVV------LSEGKKAYWICPQIEE-----------------------KKESNFRSV 503
           E+   +      LSEGK+   +  +  E                        K    + +
Sbjct: 342 EQYNTLAKKFRSLSEGKRVLEVLRRAREGDRKALEAVRVYNAMNMIKGLTKGKLVKIKEI 401

Query: 504 VER--------FNSLHEHFT-----SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           VER        F    EH       +   ++ G+MS  +++  +D FKN    +L+ TTV
Sbjct: 402 VERERDKKIIIFTQYVEHANEIARLTGAKLLTGQMSKKERDLTLDEFKNQKSGVLVLTTV 461

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            + G+D+ DAS+ I+      G +   Q   R+GR
Sbjct: 462 GDEGLDIPDASVGILVA----GTSSRRQYVQRLGR 492


>gi|313247629|emb|CBY15795.1| unnamed protein product [Oikopleura dioica]
          Length = 595

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 135/316 (42%), Gaps = 46/316 (14%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     + A        G  AV++ P   LAQQ  +  K + +++ I   
Sbjct: 152 TGSGKTLAFLLPSMLHIRAQEPIRRGDGPIAVVLLPTRELAQQVEQVSKDFVESSDIYTT 211

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P+  + + LE+       I+I T     D ++  K  L     +++DE  R   
Sbjct: 212 CVFGGAPKGPQIRDLEK----GCEIVIATPGRLLDFLEAGKTNLKRCTYLVLDEADRMLD 267

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS--LGD--IDISKITEKPAGRKPIK 459
             F  Q R  + Q      +L+ +AT +     L    LGD  I  +  + K +  K I 
Sbjct: 268 MGFEPQIRKIIDQIRPDRQLLMYSATWLKEVQALADDFLGDNYIHATIGSTKLSCNKRIL 327

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLH---EH 513
            ++   ++  E  E+L  ++S           + E++ES    F     R + L    + 
Sbjct: 328 QIVDICDQY-EKDEKLMKLIS----------HLMEERESKTIVFTETKRRADELTYKMKR 376

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                A IHG  S  +++ V+  F++G   +LIAT V   G+D+ D   ++  N +  G 
Sbjct: 377 LRWEAAAIHGDKSQSERDHVLKRFRSGRIPILIATDVASRGLDINDVKFVV--NFDFPGQ 434

Query: 574 AQLHQLR-GRVGRGEE 588
            + +  R GR  RG++
Sbjct: 435 IEDYVHRIGRTARGKD 450


>gi|237755972|ref|ZP_04584559.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691876|gb|EEP60897.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 405

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 180/399 (45%), Gaps = 62/399 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAP 329
           PT+ QE AI  +   M+ K+    + Q   G+GKT    V ++      +   QA+I+ P
Sbjct: 29  PTEIQEKAIPAV---MTGKDL---VAQAQTGTGKTAAFGVPIVEKVNPKQKKVQALILVP 82

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + IK+  +N ++    + G    +H+   L++   G   +++GT    +D 
Sbjct: 83  TRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQINFLKK---GSDVVVVGTPGRVRDL 139

Query: 390 IQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTS 439
           ++   L L      ++DE  R    G    ++  ++       +LL +AT     L L  
Sbjct: 140 LERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQILLFSATMPKEILELAE 199

Query: 440 L---GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                + +  K+       + IK +I  +N  D+  ++L  VLS+ + A  +    + K 
Sbjct: 200 EFLNENYETIKVKPDEVTVEKIKQIIYRVNPRDK-FKKLTEVLSQNE-AEKVIIFTQTKI 257

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           E++   + ER N   E F +S   IHG  S   +E+V+ +F+ G  K+L+AT V   G+D
Sbjct: 258 EAD--ELAERLN--EEGFNASA--IHGDFSQKKRETVLHNFRTGKLKILVATDVAARGLD 311

Query: 557 VVDASIIIIENAEHFGLAQ-----LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           +    ++I     ++GL +     +H++ GR GR     + I               S++
Sbjct: 312 IKGVDLVI-----NYGLPRDAESYIHRI-GRTGRAGREGTAI---------------SIM 350

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            ++ED  L   ++++++ +  I  I ++   KF  AQ +
Sbjct: 351 TSSEDKQL---QNIQKKTKANIEVINEAQEKKFSSAQKD 386


>gi|223993165|ref|XP_002286266.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977581|gb|EED95907.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 480

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 149/354 (42%), Gaps = 54/354 (15%)

Query: 297 ILQGDVGSGKTLVALIAM-------AAAVEAGGQAVIM---APIGILAQQHYEFIKKYTQ 346
           I     GSGKT   L+          A    GG+  IM   AP   LA Q  +  +K+ +
Sbjct: 87  ICVAKTGSGKTCGFLLPSFHQYFQSKATANKGGKGPIMLVLAPTRELACQILDETQKFGR 146

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVD 401
              I      G  P+  +  ALER        +I T     D I+  K  L     V++D
Sbjct: 147 PIGIRSVCCYGGSPKYAQIAALER----GVECVIATPGRLNDLIEMKKANLSNVKFVVLD 202

Query: 402 EQHR-----FGVQQR--LKLTQKATAPHVLLMTATPIPRT---LVLTSLGD---IDISKI 448
           E  R     F  Q R  +     +T    LL +AT  P+    L    L D   I++ +I
Sbjct: 203 EADRMLDMGFEPQIRSIMGSVPDSTNRQTLLFSAT-WPKEIQRLAFDFLSDPIQINVGEI 261

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
               A +   + +++     D+ I+RLK +L++ K +  I   + +K  ++     E  N
Sbjct: 262 NVLNANKDITQKIMMCSE--DDKIDRLKEILTDLKHSKVIV-FVGKKYVAH-----ELAN 313

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII---- 564
            L +    ++  +HG     ++  V+++FK GT +LLIAT V   G+DV D  +++    
Sbjct: 314 QLWDE-GFAVDSLHGDREQWERTKVINAFKQGTLRLLIATDVAARGLDVKDVGVVVNYDM 372

Query: 565 ---IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +  AE +    +H++ GR GR         ++ P   K +   + +L+  E
Sbjct: 373 PVGVNGAEDY----IHRI-GRTGRAGAKGIAYTMFTPGDKKLATQLVEILEKAE 421


>gi|90408198|ref|ZP_01216366.1| putative ATP-dependent RNA helicase DbpA [Psychromonas sp. CNPT3]
 gi|90310728|gb|EAS38845.1| putative ATP-dependent RNA helicase DbpA [Psychromonas sp. CNPT3]
          Length = 462

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 142/344 (41%), Gaps = 35/344 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I QG  GSGKT    + +   +       Q++I+ P   LA Q    I++  +    I V
Sbjct: 45  IAQGKTGSGKTAAFALGLLQKLNVKRFRIQSLILCPTRELADQVSSEIRRLARGIHNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G  P   +  +LE   HG AHII+GT    QD ++   L L     +++DE  R  
Sbjct: 105 LTLCGGAPFGPQIGSLE---HG-AHIIVGTPGRIQDHLRKQTLCLDEVSMLVLDEADRML 160

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
             G    ++  + Q   +   LL +AT P     +  ++    +S   E       I   
Sbjct: 161 DMGFVDAIEDIIEQAPKSRQTLLFSATFPDQIQQISRNILRDPVSIKVEAMHDDNTISQY 220

Query: 462 IIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
              +   +E  +  RL ++  +   A   C        +  R V E    L+    S++A
Sbjct: 221 FYLVRSAEERMLALRLLILQYQPTSAVVFC--------NTKREVQEVAEELNNRGFSALA 272

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG +   D++  +  F N +C +L+AT V   G+D+ + S +   N  H     +H++
Sbjct: 273 -LHGDLDQKDRDQALIRFSNRSCSILVATDVAARGLDIENLSAVFNYNLAHDQEIHVHRI 331

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
            GR GR          Y    S     R+ +L++  D  + A+E
Sbjct: 332 -GRTGRAGSKGMAFSFY----SAKDEHRIHLLEDLLDRNIQAQE 370


>gi|58039204|ref|YP_191168.1| primosome assembly protein PriA [Gluconobacter oxydans 621H]
 gi|58001618|gb|AAW60512.1| Primosomal replication factor Y, primosomal protein N'
           [Gluconobacter oxydans 621H]
          Length = 746

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 11/143 (7%)

Query: 272 SPTKSQESA--IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           +P  S+E A   +++   +      + +L+G  GSGKT V   A+AA +  G Q +++ P
Sbjct: 211 APKLSEEQAEVAQELCGPVEAGRFQVTLLEGVTGSGKTEVYFEAVAACLAKGKQVLVLLP 270

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I + AQ    FI+++         +   ++    RR+    +A G A +++G   ALF 
Sbjct: 271 EIALSAQWTDRFIRRFGAEPA----VWHSDLGAKRRRETWRAVAEGSARVVVGARSALF- 325

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
             + +  L LV+VDE+H    +Q
Sbjct: 326 --LPFADLGLVVVDEEHESAFKQ 346


>gi|23501822|ref|NP_697949.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|161618894|ref|YP_001592781.1| ATP-dependent RNA helicase DDX17 [Brucella canis ATCC 23365]
 gi|254701699|ref|ZP_05163527.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           suis bv. 5 str. 513]
 gi|254704242|ref|ZP_05166070.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           suis bv. 3 str. 686]
 gi|256061039|ref|ZP_05451195.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           neotomae 5K33]
 gi|256369364|ref|YP_003106872.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|260566511|ref|ZP_05836981.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|261325038|ref|ZP_05964235.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261752249|ref|ZP_05995958.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261754908|ref|ZP_05998617.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|294852292|ref|ZP_06792965.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
 gi|23347756|gb|AAN29864.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
 gi|161335705|gb|ABX62010.1| Probable ATP-dependent RNA helicase DDX17 [Brucella canis ATCC
           23365]
 gi|255999524|gb|ACU47923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|260156029|gb|EEW91109.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|261301018|gb|EEY04515.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261742002|gb|EEY29928.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261744661|gb|EEY32587.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|294820881|gb|EFG37880.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
          Length = 482

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 147/347 (42%), Gaps = 61/347 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+    +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE----RKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +  KL+L     +++DE  R        +      P +  +    P  R TL  +
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADR--------MLDMGFIPDIERICKLIPFTRQTLFFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDE-VIERL---------------KVVLSEG 482
           +    +I+K+TE+     P++  +   +   + V +RL                ++ SEG
Sbjct: 186 ATMPPEITKLTEQFL-HSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEG 244

Query: 483 ---KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
              K A   C        +  + V E F SL  H   + A+ HG M    + +++ SFK+
Sbjct: 245 DSLKNAIIFC--------NRKKDVSELFRSLTRHEFDAGAL-HGDMDQRARMAMLSSFKD 295

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR 
Sbjct: 296 GKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRA 341


>gi|320547900|ref|ZP_08042183.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           equinus ATCC 9812]
 gi|320447440|gb|EFW88200.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           equinus ATCC 9812]
          Length = 447

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 132/317 (41%), Gaps = 29/317 (9%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           +   GSGKT   L+ +   ++      Q VI AP   LA Q Y+  K+  + ++   EI 
Sbjct: 44  ESKTGSGKTHTFLLPIFEKLDENNNNVQVVITAPSRELATQIYQATKQIAEKSE--TEIR 101

Query: 356 TGN-MPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQ 409
             N +    + + +E++   Q HI+IGT     D      ++ YK    +VDE       
Sbjct: 102 VANYVGGTDKLRQIEKLKSAQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDM 161

Query: 410 QRLKLTQK--ATAP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
             L    K   T P    +L+ +AT IP+ L         + K    P   K IKT  + 
Sbjct: 162 GFLDTVDKIAGTLPKDVQILVFSAT-IPQKLQPF------LKKYLTNPVMEK-IKTTTVI 213

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAII 521
            + ID  +   K    +  +   I   I       F +  ER + LH +  S+   +A I
Sbjct: 214 ADTIDNWLVSTKG-RDKNAQILEITKAINPYLAMIFVNTKERADELHSYLASNGLKVAKI 272

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG +   +++  M+  K  + + ++AT +   GID+   S +I +         +H++ G
Sbjct: 273 HGDIPPRERKRTMNQIKKLSYEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-G 331

Query: 582 RVGRGEEISSCILLYHP 598
           R GR       I LY P
Sbjct: 332 RTGRNGLNGIAITLYQP 348


>gi|87200406|ref|YP_497663.1| primosome assembly protein PriA [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87136087|gb|ABD26829.1| primosomal protein N' [Novosphingobium aromaticivorans DSM 12444]
          Length = 733

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 92/200 (46%), Gaps = 15/200 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L G  GSGKT      +AAA+EAG Q +++ P   L +    F+K++     +      
Sbjct: 225 LLDGVTGSGKTETYFEGVAAALEAGRQVLVLLPEIALTET---FLKRFEARFGVPPVTWH 281

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
            ++  + RR+A   ++ G A +++G   ALF   + +  L L++VDE H    +Q   + 
Sbjct: 282 SSLKSSERRRAWRSVSSGAAQVVVGARSALF---LPFADLGLIVVDEAHEISFKQDDGVR 338

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
             A    V+      IP   V+ +     +  +    AGR   + V++P       +  +
Sbjct: 339 YNARDVAVMRAHFEKIP---VILASATPALESLQMAEAGR--YERVVLPARFGGATMPHI 393

Query: 476 KVV---LSEGKKAYWICPQI 492
           +VV   + + ++ +WI P +
Sbjct: 394 QVVDLRVEQPERGHWIAPPL 413


>gi|15964184|ref|NP_384537.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
 gi|307301327|ref|ZP_07581089.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
 gi|15073360|emb|CAC41868.1| Putative ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
 gi|306903783|gb|EFN34370.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 630

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 131/314 (41%), Gaps = 40/314 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  +        +AG   A+++AP   LA Q    +    + 
Sbjct: 41  LVSAQTGSGKTVAFGLALAPTLIGSARKFAQAGAPLALVIAPTRELALQVMRELDWLYEM 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399
               +    G M     R+ LER     AHI++GT     D I+   L        +L  
Sbjct: 101 AGATIASCVGGMDMRSERRTLER----GAHIVVGTPGRLCDHIRRGSLDISGLKAVVLDE 156

Query: 400 VDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLV-LTSLGDIDISKI----TEKPA 453
            DE    G ++ L+   +A+ A    LM +  +PR++  L      D  +I     +K  
Sbjct: 157 ADEMLDLGFREDLEFILEASPADRRTLMFSATVPRSIATLAKSYQRDAVRIGVTSEQKQH 216

Query: 454 GRKPIKTVII-PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           G    +++++ P +R + +I  L+    E + A   C         + R+ V    +   
Sbjct: 217 GDIEYRSLLVAPSDRENAIINVLR--FYEARNAIVFC---------STRAAVNHLTARFN 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   S+  + G +S  ++   + + ++G  ++ IAT V   GID+    ++I  +     
Sbjct: 266 NRGFSVVALSGELSQNERTHALQAMRDGRARVCIATDVAARGIDLPGLELVIHADLPTNS 325

Query: 573 LAQLHQLRGRVGRG 586
              LH+  GR GR 
Sbjct: 326 DTLLHR-SGRTGRA 338


>gi|329889383|ref|ZP_08267726.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
 gi|328844684|gb|EGF94248.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
          Length = 490

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 135/346 (39%), Gaps = 62/346 (17%)

Query: 302 VGSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            G+GKT    + M   + +G       +AV++AP   LA Q  E   KY + T++   ++
Sbjct: 48  TGTGKTAAFTLPMVDRLASGRARARMPRAVVLAPTRELADQVAESFAKYAKGTRLNWVLL 107

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---G 407
            G +    +  AL +       ++I T     D     K++L     ++VDE  R    G
Sbjct: 108 IGGVSMGDQIAALNK----GVDVLIATPGRLLDLFDRGKMLLTGVELMVVDEADRMLDMG 163

Query: 408 VQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
               ++   K T P    L  +AT  P    LT     D ++I            V  P 
Sbjct: 164 FIPDIERIFKLTPPRRQTLFFSATMPPEITRLTQQFLKDPTRIE-----------VARPA 212

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN----------------- 508
              D + + +  + S   KA          K +  R++VER +                 
Sbjct: 213 TTADTITQHITRLPSSDPKA----------KRTALRALVERGDVQNGIVFCNRKSEVDIV 262

Query: 509 --SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             SL  H  ++ A IHG +    +   +  F++G  KLL+A+ V   G+D+   S +   
Sbjct: 263 AKSLQVHGFNA-APIHGDLDQSLRMKTLSDFRSGELKLLVASDVAARGLDIPAVSHVFNY 321

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +  H     +H++ GR GR   +    ++  P   K+    L ++K
Sbjct: 322 DVPHHADDYVHRI-GRTGRAGRLGEAFMIVTPADDKSLDKVLKLIK 366


>gi|255559765|ref|XP_002520902.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223540033|gb|EEF41611.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 535

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 141/321 (43%), Gaps = 49/321 (15%)

Query: 302 VGSGKTLV----ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            GSGKTL      L+ +  + + G +AVI+ P   LA Q     KK  +  +  ++++T 
Sbjct: 185 TGSGKTLAFVCPMLMKLKHSSKDGIRAVILCPTRELASQTTRECKKMAKGNKFRIKLMTK 244

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ 409
            +    R K L R+      I++ T    Q +I+  K+ L     +++DE  +    G+ 
Sbjct: 245 ELV---RTKDLSRLP---CDILVSTPLRLQLAIRKKKVDLSRVEYLVLDESDKLFELGLL 298

Query: 410 QRLKLTQKATA-PHVL--LMTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIKTVII 463
           +++    KA + P V+  L +AT +P +   L  T + D               ++ ++ 
Sbjct: 299 KQIDSVFKACSNPSVIRSLFSAT-LPESVEELARTIMHD--------------AVRVIVG 343

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-----FRSVVERFNSLHEH--FTS 516
             N   E I++ K+V +  ++   I  +    +  N     F    ER N L+E   F S
Sbjct: 344 RKNAASETIKQ-KLVFTGSEEGKLIALRQSFAESLNPPVLIFVQNKERANELYEELKFDS 402

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + +IH  +    +E  +D F+ G   +LIAT V+  G+D    + +I  +  +   A 
Sbjct: 403 IRVGVIHSDLLQTQREIAVDDFRAGNSWVLIATDVVARGMDFKGVNCVINYDFPNSAAAY 462

Query: 576 LHQLRGRVGRGEEISSCILLY 596
           +H++ GR GR       I  Y
Sbjct: 463 IHRI-GRSGRAGRTGEAITFY 482


>gi|42518736|ref|NP_964666.1| hypothetical protein LJ0811 [Lactobacillus johnsonii NCC 533]
 gi|41583022|gb|AAS08632.1| hypothetical protein LJ_0811 [Lactobacillus johnsonii NCC 533]
          Length = 409

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 125/305 (40%), Gaps = 24/305 (7%)

Query: 302 VGSGKTLV-ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G+GKTL   L  M    E GG+ +I+ P   LA Q    +  Y ++  +    + G   
Sbjct: 41  TGTGKTLAYGLPVMERIAEIGGRGIILEPTTELAIQTRNNLLPYAKSLGLKTIALVG--- 97

Query: 361 QAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
             +R++ LER+   +  III T   F     ++ I+Y  +  +++DE        +L L 
Sbjct: 98  AGNRKRQLERLKKEKPEIIIATPGRFFDFLSENRIKYQDINALVIDEADDILEFTKLDLL 157

Query: 416 QK-----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
                  ++   +LL  A+    T     L +     I  +P  +  +K   + ++  +E
Sbjct: 158 SSLGQNLSSTAQILLFGASESEITKDAEDLFNHIFLLIDVRPEQKSEVKHYFLQVS--NE 215

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
              +    L++  K   I     +  ES       RF  +  H  +  A++    S  ++
Sbjct: 216 YKMQFLQRLAKLDKFKGIL--FFDSTESEM-----RFARIFSHSKTKFAVLSNETSKQNR 268

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E ++  F+ G  K L AT +   G+D+ D S +I           LH+  GR GR  +  
Sbjct: 269 EKILSDFRAGRIKFLFATDLAARGLDLPDVSYVINFEIPSEVNTYLHR-SGRTGRMNKSG 327

Query: 591 SCILL 595
           + + L
Sbjct: 328 TVVTL 332


>gi|17987318|ref|NP_539952.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str.
           16M]
 gi|225852449|ref|YP_002732682.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis ATCC 23457]
 gi|254689182|ref|ZP_05152436.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 6 str. 870]
 gi|256044606|ref|ZP_05447510.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256113486|ref|ZP_05454320.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|256257432|ref|ZP_05462968.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 9 str. C68]
 gi|256264057|ref|ZP_05466589.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563958|ref|ZP_05834444.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260754681|ref|ZP_05867029.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260883707|ref|ZP_05895321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|265991030|ref|ZP_06103587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265994867|ref|ZP_06107424.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|297248281|ref|ZP_06931999.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
 gi|17982999|gb|AAL52216.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str.
           16M]
 gi|225640814|gb|ACO00728.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis ATCC 23457]
 gi|260153974|gb|EEW89066.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260674789|gb|EEX61610.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260873235|gb|EEX80304.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|262765980|gb|EEZ11769.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|263001814|gb|EEZ14389.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094252|gb|EEZ18122.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|297175450|gb|EFH34797.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
 gi|326408963|gb|ADZ66028.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
 gi|326538677|gb|ADZ86892.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
          Length = 482

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 147/347 (42%), Gaps = 61/347 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+    +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE----RKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +  KL+L     +++DE  R        +      P +  +    P  R TL  +
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADR--------MLDMGFIPDIERICKLIPFTRQTLFFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDE-VIERL---------------KVVLSEG 482
           +    +I+K+TE+     P++  +   +   + V +RL                ++ SEG
Sbjct: 186 ATMPPEITKLTEQFL-HSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEG 244

Query: 483 ---KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
              K A   C        +  + V E F SL  H   + A+ HG M    + +++ SFK+
Sbjct: 245 DSLKNAIIFC--------NRKKDVSELFRSLTRHEFDAGAL-HGDMDQRARMAMLSSFKD 295

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR 
Sbjct: 296 GKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRA 341


>gi|13473463|ref|NP_105030.1| primosome assembly protein PriA [Mesorhizobium loti MAFF303099]
 gi|14024212|dbj|BAB50816.1| primosomal replication factor Y; primosomal protein N'
           [Mesorhizobium loti MAFF303099]
          Length = 727

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 23/165 (13%)

Query: 257 VEGKIAQKILRNI-----PFSPTKSQESAIKDILQDMSQKNRMLR-----------ILQG 300
           +EG  AQ +   +     P         A+ +++ D S    MLR           +L G
Sbjct: 162 IEGLKAQGVFETVMIPPRPVVAAPDPSYAVPELMPDQSDAASMLRANVAAGAFNVALLDG 221

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
             GSGKT V   A+AAA++ G Q +I+ P   L    + F++++ Q           ++P
Sbjct: 222 VTGSGKTEVYFEAVAAALDQGKQVLILLPEIALT---HAFLERFQQRFGAKPGEWHSDLP 278

Query: 361 QAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH 404
              R K   ++A G   ++ G   ALF   + + +L L++VDE+H
Sbjct: 279 PRMREKVWRQVAEGTVRVVAGARSALF---LPFKELGLIVVDEEH 320


>gi|325125552|gb|ADY84882.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 589

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 138/337 (40%), Gaps = 43/337 (12%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           ++I++ + Q   +L ++    G GK+L   I    A+   G  V+++P+  L +   + +
Sbjct: 22  REIIEKVFQGKNVLAVMP--TGGGKSLCYQIP---ALMIPGATVVISPLISLMKDQVDSM 76

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLI 396
           ++Y     I    +  +  Q      L     G+  ++  T        F+  + + ++ 
Sbjct: 77  REYG----IPAAALNSSTAQEDVNPILRACYEGKIKLLYVTPERMEMDYFRYQLNFLEVN 132

Query: 397 LVIVDEQH---RFG-----VQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGD-IDI 445
           LV +DE H   ++G       ++LK    A  T P+VL +TAT      V   +G  +DI
Sbjct: 133 LVAIDEAHCISQWGHDFRPAYRKLKDGINALHTHPNVLALTATAT--KAVREDIGQQLDI 190

Query: 446 SK----ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           S+    IT         K V  P N    ++  LK    E    Y           SN R
Sbjct: 191 SEENFVITSFERKNLHFKLVNAPKNSRAYIVNYLKQHRGEAGIIY-----------SNTR 239

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             VE           ++A  H  MS+ ++  V D F+     L++AT    +GID  +  
Sbjct: 240 KKVEGLTEFLRREGFNVAAYHAGMSNEERAQVQDDFQYDRIPLIVATNAFGMGIDKSNVR 299

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            ++  N+    L   +Q  GR GR    S  ++L+HP
Sbjct: 300 FVLHANSAK-NLEAYYQEAGRAGRDGLESEAVMLFHP 335


>gi|255564033|ref|XP_002523015.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223537737|gb|EEF39357.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 956

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 124/287 (43%), Gaps = 39/287 (13%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI             + G   +++AP   LA Q  + + K+ +++++    
Sbjct: 534 TGSGKTLGYLIPAFILLRQCRNNPQNGPTVLVLAPTRELATQIQDEVIKFGRSSRVSCTC 593

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF--- 406
           + G  P+  + K L R     A I++ T     D      I + ++ L+++DE  R    
Sbjct: 594 LYGGAPKGPQLKELTR----GADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDM 649

Query: 407 GVQQRLKLTQKATAP--HVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
           G + +++       P    L+ TAT  P+ +      +L +   ++I  + E  A +   
Sbjct: 650 GFEPQIRKIVNEIPPRRQTLMYTAT-WPKEVRKIANDLLVNPVQVNIGSVDELAANKSIT 708

Query: 459 KTV-IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + V ++P    +  + ++      G K    C        S  R   +   S+   F + 
Sbjct: 709 QYVEVVPQMEKESRLGQILRAQERGSKVIIFC--------STKRLCDQLARSIGHQFGA- 759

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            A IHG  S  +++ V++ F++G   +L+AT V   G+D+ D  ++I
Sbjct: 760 -AAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVI 805


>gi|74006736|ref|XP_861449.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 8 [Canis familiaris]
          Length = 663

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 413

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 414 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 466

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|2580550|gb|AAC51829.1| dead box, X isoform [Homo sapiens]
 gi|2580552|gb|AAC51830.1| dead box, X isoform [Homo sapiens]
          Length = 662

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 413

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 414 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 466

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|116513890|ref|YP_812796.1| superfamily II DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093205|gb|ABJ58358.1| ATP-dependent DNA helicase, RecQ-like protein [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 589

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 138/337 (40%), Gaps = 43/337 (12%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           ++I++ + Q   +L ++    G GK+L   I    A+   G  V+++P+  L +   + +
Sbjct: 22  REIIEKVFQGKNVLAVMP--TGGGKSLCYQIP---ALMIPGATVVISPLISLMKDQVDSM 76

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLI 396
           ++Y     I    +  +  Q      L     G+  ++  T        F+  + + ++ 
Sbjct: 77  REYG----IPAAALNSSTAQEDVNPILRACYEGKIKLLYVTPERMEMDYFRYQLNFLEVN 132

Query: 397 LVIVDEQH---RFG-----VQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGD-IDI 445
           LV +DE H   ++G       ++LK    A  T P+VL +TAT      V   +G  +DI
Sbjct: 133 LVAIDEAHCISQWGHDFRPAYRKLKDGINALHTHPNVLALTATAT--KAVREDIGQQLDI 190

Query: 446 SK----ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           S+    IT         K V  P N    ++  LK    E    Y           SN R
Sbjct: 191 SEENFVITSFERKNLHFKLVNAPKNSRAYIVNYLKQHRGEAGIIY-----------SNTR 239

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             VE           ++A  H  MS+ ++  V D F+     L++AT    +GID  +  
Sbjct: 240 KKVEGLTEFLRREGFNVAAYHAGMSNEERAQVQDDFQYDRIPLIVATNAFGMGIDKSNVR 299

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            ++  N+    L   +Q  GR GR    S  ++L+HP
Sbjct: 300 FVLHANSAK-NLEAYYQEAGRAGRDGLESEAVMLFHP 335


>gi|303238460|ref|ZP_07324994.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593858|gb|EFL63572.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 481

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 151/365 (41%), Gaps = 44/365 (12%)

Query: 260 KIAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           K++ ++L+ I      SPTK QE  I  +L+          I++   GSGKT    I + 
Sbjct: 10  KLSSELLKAIDMLNYKSPTKVQEMVIPAVLEHKDV------IVKSQTGSGKTAAFAIPIC 63

Query: 316 AAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
             V   E   Q +++ P   LA Q  E I    +  ++ V  I G     ++ K L++  
Sbjct: 64  DLVDWDENKPQVLVITPTRELAIQVKEDIFNLGRFKRLKVSAIYGRSSFYNQEKELKQ-- 121

Query: 373 HGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF----GVQQRLKLTQKATAPHV 423
             + H+++GT     D ++       K+  +I+DE         V+Q   +  K      
Sbjct: 122 --KTHVVVGTPGRIIDHLERGTFDTSKIKYLIIDEADEMLSMGFVEQIEDIIGKLPDERT 179

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEG 482
            ++ +  +P+          DI+ + +K   + P+   I   N+ ID +++    V    
Sbjct: 180 TILLSATLPK----------DIAVLCDKYM-KNPVYAEIEEENKAIDRIVQERYEVDEND 228

Query: 483 KKAYWICPQIEEKKESN--FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSF 537
           K          E  +S   F S   + + L +       +   IHG M   D+  VM+ F
Sbjct: 229 KLNLLRDITTLENPDSCIIFCSTKIKTDELFDELAKLNYTCEKIHGGMEQSDRLRVMNDF 288

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  + L+AT V   GID+ D S++I  +      + +H++ GR GR +     I    
Sbjct: 289 KQGYFRYLVATDVAARGIDIDDISLVINYDIPQDKESYVHRI-GRTGRVDRNGKAITFVT 347

Query: 598 PPLSK 602
           P  SK
Sbjct: 348 PDESK 352


>gi|154300880|ref|XP_001550854.1| hypothetical protein BC1G_10578 [Botryotinia fuckeliana B05.10]
 gi|160380613|sp|A6SCT6|DBP3_BOTFB RecName: Full=ATP-dependent RNA helicase dbp3
 gi|150856326|gb|EDN31518.1| hypothetical protein BC1G_10578 [Botryotinia fuckeliana B05.10]
          Length = 592

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 138/335 (41%), Gaps = 38/335 (11%)

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            + GSGKT+   +     +  G +AV+++P   LA Q YE I K  + + +    + G +
Sbjct: 230 AETGSGKTMAFAVP---CINKGPRAVVVSPTRELAMQSYEQIVKLAKASGLECVCVYGGV 286

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF---GVQQR 411
           P+  + +AL+      A I++ T     D I        K   V++DE  R    G ++ 
Sbjct: 287 PKDEQIRALK-----TADIVVATPGRLNDLINQGCADLSKARYVVLDEADRMLDKGFEEE 341

Query: 412 LK----LTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVII- 463
           ++     T        L+ TAT  P   R L  T +       I + P G     + I+ 
Sbjct: 342 IRKIINTTPSLGKRQTLMFTAT-WPESVRELAATFMTSPVKIAIGDNPTGDLRANSRIVQ 400

Query: 464 ------PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
                 P ++   +++ LK   S  +K   I      KKE+       R  S        
Sbjct: 401 KVEVVEPRDKEYRLMQLLKQYQSGSQKDDRILVFCLYKKEAT------RVESFIRQKGFR 454

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A IHG +S   +   +++FK+G   +L+AT V   G+D+    ++I           +H
Sbjct: 455 VAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVH 514

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           ++ GR GR  +    I L+       S   ++VLK
Sbjct: 515 RI-GRTGRAGKDGLAITLFTEHDKAQSGALINVLK 548


>gi|145517226|ref|XP_001444496.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124411918|emb|CAK77099.1| unnamed protein product [Paramecium tetraurelia]
          Length = 434

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 153/362 (42%), Gaps = 72/362 (19%)

Query: 261 IAQKILRNIPFS-----PTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIA 313
           +++ +LR I FS     P+  Q+ AIK I+  +D+        + Q   G+GKT    I 
Sbjct: 63  LSKDLLRGI-FSYGFERPSAIQQKAIKPIILGKDV--------LAQAQSGTGKTGTFTIG 113

Query: 314 MAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
               ++      Q +I+AP+  LA+Q Y+ +K   Q   I      G       R   E+
Sbjct: 114 ALQRIDPNQRKTQVIILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTSTQETR---EK 170

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
              G  HIII T     D ++   L      L++VDE  +        L Q  +     +
Sbjct: 171 CKQG-VHIIIATPGRLIDMMKNKYLDATFMRLLVVDEADQM-------LDQGFSDNFAEI 222

Query: 426 MTATPIPRTLVLTSLGDIDISKITEK-PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +   P          GDI I+  +   P     +    +       ++++ ++ L EG +
Sbjct: 223 LKMVP----------GDIQIALFSATFPQEIIELSKQFLRDGTAKILVKKEQLTL-EGIR 271

Query: 485 AYWICPQIEEKKESNFRSVVERF------------------NSLHEHFTS---SIAIIHG 523
            ++I  Q E++K   F+ +VE +                  + L++  T+   +++ IH 
Sbjct: 272 QFYIAIQQEDQK---FKVLVELYKNLTVSQSILFCNSKKTVDDLYDKLTAEGFTVSKIHS 328

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M   ++E VM  FK G  ++L++T ++  GIDV   S++I           +H++ GR 
Sbjct: 329 QMEQKEREQVMQEFKKGAARILVSTDLMGRGIDVQQLSLVINYEFPRLKEQYIHRV-GRA 387

Query: 584 GR 585
           GR
Sbjct: 388 GR 389


>gi|328768074|gb|EGF78121.1| hypothetical protein BATDEDRAFT_33571 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 404

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 137/294 (46%), Gaps = 48/294 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+++AP   LAQQ  + I       QI   
Sbjct: 72  IAQAQSGTGKTATFSISILQNIDETVRECQALVLAPTRELAQQIQKVILALGDFLQIECH 131

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGV 408
              G     + R+ ++++  G  H+++GT     D     +++  K+ + ++DE      
Sbjct: 132 ACIGG---TNVREDMDKLQAG-PHVVVGTPGRVFDMINRGALRANKIKMFVLDE-----A 182

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            + L    K    +V  + ++ I + ++L++    D+ ++T         K+ ++   RI
Sbjct: 183 DEMLSRGFKEQIYNVFQLLSSEI-QVVLLSATMPADVLEVT---------KSFMVDPKRI 232

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------RFNSLHEH 513
             +++R ++ L EG K ++I  + EE K      + E               + + L EH
Sbjct: 233 --LVKRDELTL-EGIKQFYIAVEKEEWKFETLCDLYETVTVTQAVIFCNTKRKVDWLTEH 289

Query: 514 FTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             +   +++ +HG M   +++++M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 290 MRARDFTVSALHGEMEQKERQTIMGEFRSGSSRILITTDLLARGIDVQQVSLVI 343


>gi|303242448|ref|ZP_07328930.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302590033|gb|EFL59799.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 386

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 154/333 (46%), Gaps = 41/333 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT  Q+  I + L     KN+ + + Q   G+GKTL  L+ +   V A     QA+I+ P
Sbjct: 26  PTDIQQRVIPEAL-----KNKDI-VAQSGTGTGKTLAYLLPLFEKVNAELKEMQAIILCP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVE--IITGNMPQAHRRKALERIAHGQAHIIIGT----- 382
              LA Q    I++ +QN+ I ++   I GN+   +  + +E++   + HII+GT     
Sbjct: 80  THELAVQIMRQIERLSQNSDIKIKGTTIIGNV---NIDRQIEKLKE-KPHIIVGTPGRIL 135

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ---KATAP--HVLLMTATPIPR---T 434
             + +  I  + +  +I+DE  R   +   +  +   K+T     V+  +AT IP+   T
Sbjct: 136 ELIKKRKISAHTIKTIIIDEADRLMDENNTEFVKAVIKSTLKERQVMAYSAT-IPKRVET 194

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQI 492
            ++  + +  + ++ EK +    I  +     + D  EV+ +L  +L   K   ++  Q 
Sbjct: 195 GIIEQMKEAQVIRVEEKLSVPDTISHMCFLAEKRDKIEVLRKLVRILEPQKAIVFVNNQG 254

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +E F S  ++    +  IHG    ++++  M+ FK+G  +LLIA+ +  
Sbjct: 255 NE---------IEIFTSKLKYHGLGVEGIHGTTHKLERKKAMEEFKSGKIQLLIASDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            G+ +   + I   +      A +H++ GR GR
Sbjct: 306 RGLHIEGVTHIFNIDIPEDVKAYVHRV-GRSGR 337


>gi|302853426|ref|XP_002958228.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
           nagariensis]
 gi|300256416|gb|EFJ40682.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
           nagariensis]
          Length = 574

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 134/325 (41%), Gaps = 53/325 (16%)

Query: 301 DVGSGKTLVALIAMAAAV----------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQ 349
           + GSGKT   ++ M + +          EA G  AV++AP   LAQQ  E   K    T 
Sbjct: 200 ETGSGKTAAFVLPMLSYIMRQPPMTEENEADGPYAVVLAPTRELAQQIEEETHKLAYYTN 259

Query: 350 IIVEIITGNMP----QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
             +  + G        A  RK  E        I+I T     D I  +  +L     V++
Sbjct: 260 YRIASVVGGQSIEEQGAKLRKGCE--------IVIATPGRLLDCIDRHYAVLNQCNYVVL 311

Query: 401 DEQHR---FGVQQRLKLTQKATAPHVL-------LMTATPIPRTLVLTSLGDIDISKITE 450
           DE  R    G + ++     A     L       ++ A    RT  + S       +   
Sbjct: 312 DEADRMIDLGFEPQVIGVLDAMPSSFLKPDEDGAVLEANRTYRTTYMFSATMPPAVERLA 371

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE---EKKESNFRSVVERF 507
           K   R+P+  VI    ++ + + +   V+ E +K   +  ++E   EK+   F +   + 
Sbjct: 372 KKYLRRPVVVVIGSAGKVTDNVTQRVFVVKENEKPRVLEQEMESVDEKRVIVFVNTQRQC 431

Query: 508 NSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +++H H         I+HG  +   +E+ +  F++GT   LIAT V   GIDV D +++I
Sbjct: 432 DNVHRHLEELGYRCTILHGGKTQDQREAGIKGFRDGTYNCLIATDVAGRGIDVPDVALVI 491

Query: 565 ----IENAEHFGLAQLHQLRGRVGR 585
                 N E++     H++ GR GR
Sbjct: 492 NYDMPNNIENY----THRI-GRTGR 511


>gi|251778083|ref|ZP_04821003.1| cold-shock deAd box protein a [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082398|gb|EES48288.1| cold-shock deAd box protein a [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 367

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 152/349 (43%), Gaps = 53/349 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +PT  QE +I  IL   S K+    I +   G+GKTL  L+ +   +     G Q +I++
Sbjct: 23  TPTAIQEESIPKIL---SGKDV---IGEAKTGTGKTLAFLLPIFQNISPDTNGTQVLILS 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E  KK   N  I +    G      + K L+       H++I T     D
Sbjct: 77  PTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLKKLKH----NVHLVIATPGRLLD 132

Query: 389 -----SIQYYKLILVIVDEQHRF---GVQQRL-KLTQKATAPHVLLMTATPIPRTLVLTS 439
                +I   KL  +++DE  +    G +  + K+ + A+  H          +TL  ++
Sbjct: 133 HIDRKTIDLSKLKTIVIDEADQMLLMGFKNDIEKIMKVASKKH----------QTLCFSA 182

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK---VVLSEGKKAYWICPQIEEKK 496
             D  + K+    A R  I  + I I      ++++K   V  ++  K   +C  ++E  
Sbjct: 183 TMDSQVKKL----AYRYMIDPLFIDIKSPTIAVDKIKQQVVETTDRWKQDSLCATLQE-- 236

Query: 497 ESNFRSVV-----ERFN----SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           ++ F +++      R +    +LH+   +    IH  +    +E +M SF+N   + LIA
Sbjct: 237 DNPFMAIIFCRTKRRADVLEIALHQKGLNC-QKIHSDVPQAKRERIMKSFRNADIQYLIA 295

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILL 595
           T V   GID+   S I   +      + +H++ GR GR GE+  +C+ +
Sbjct: 296 TDVAARGIDISGVSHIYNYDTPETPESYIHRI-GRTGRAGEDGYTCMFV 343


>gi|145640288|ref|ZP_01795872.1| primosome assembly protein PriA [Haemophilus influenzae R3021]
 gi|145274874|gb|EDK14736.1| primosome assembly protein PriA [Haemophilus influenzae 22.4-21]
          Length = 697

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 92/447 (20%), Positives = 181/447 (40%), Gaps = 98/447 (21%)

Query: 242 LMRKQFKKEIGI---PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L  K F +EI I   P++ + ++    + N     T +++ A+    Q +      + +L
Sbjct: 165 LKAKGFIEEITIHTNPLSWQQRLGNNPIVNAENRLTLNKQQALA-FSQLLFHSGFNVWLL 223

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITG 357
            G  GSGKT + L  +   +++G Q +++ P IG+  Q     ++++     + ++++  
Sbjct: 224 DGVTGSGKTEIYLQYIEEILKSGKQVLVLVPEIGLTPQT----VQRFKARFNVEIDVLHS 279

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR----- 411
           N+    R    +R   GQ+ I+IGT  ALF    Q+  L  +I+DE+H    +Q+     
Sbjct: 280 NLTDTQRLYVWDRARSGQSAIVIGTRSALF---TQFSNLGAIILDEEHDSSYKQQDSWRY 336

Query: 412 ------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                 + L QK     VL+ +ATP   ++     G      ++++      ++  +I +
Sbjct: 337 HARDLAIVLAQKLNIS-VLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVIDL 395

Query: 466 NRID-------EVIERLKVVLSEGKKAY------------------WI--CPQIEEKKES 498
              +        ++ER+K  L +G +                    WI  CP  E+    
Sbjct: 396 KNQNIQNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPYTY 455

Query: 499 NFRSVVERFN----------------SLH--------EHFTSSIAII--HGRMSDIDKES 532
           +    V R +                S H        E    ++  +  H  ++ ID++S
Sbjct: 456 HQHQNVLRCHHCGAQKTIPRQCGDCGSTHLVTTGLGTEQLEETLKTLFPHYSVARIDRDS 515

Query: 533 V---------MDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHFGL 573
                     ++  + G  ++LI T ++           V +  VD+++  ++      L
Sbjct: 516 TARKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNVDSALFSLDFRAEERL 575

Query: 574 AQLH-QLRGRVGRGEEISSCILLYHPP 599
           AQL+ Q+ GR GR ++    +L  H P
Sbjct: 576 AQLYIQVAGRAGRADKQGEVVLQTHYP 602


>gi|46116580|ref|XP_384308.1| hypothetical protein FG04132.1 [Gibberella zeae PH-1]
 gi|91206540|sp|Q4IF76|DBP2_GIBZE RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 555

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 153/344 (44%), Gaps = 51/344 (14%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +     + A        G   +++AP   LA Q  E +KK+ ++++I 
Sbjct: 178 AETGSGKTLTYCLPSIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQEEMKKFGRSSRIR 237

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF 406
              + G +P+  + + L R       + I T     D ++  K  L     +++DE  R 
Sbjct: 238 NTCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRM 293

Query: 407 ---GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KI 448
              G + +++            L   AT P  +   A+   +  +  ++G ++++   +I
Sbjct: 294 LDMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRALASDFLQDFIQVNIGSMELAANHRI 353

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           T+       I  V+  + + D +I+ ++ V+   +    I   +  K+ ++    + RF 
Sbjct: 354 TQ-------IVEVVTEMEKRDRMIKHMEKVMENKENKILIF--VGTKRVAD---EITRF- 400

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L +    +++I HG     +++ V+D FK G   +++AT V   GIDV + + ++  + 
Sbjct: 401 -LRQDGWPALSI-HGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDY 458

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR GR   + + I L+     K +   ++VL+
Sbjct: 459 PNNSEDYIHRI-GRTGRAGAMGTAITLFTTDNQKQARDLVNVLQ 501


>gi|104773884|ref|YP_618864.1| ATP-dependent DNA helicase RecQ [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422965|emb|CAI97636.1| ATP-dependent DNA helicase RecQ [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 589

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 138/337 (40%), Gaps = 43/337 (12%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           ++I++ + Q   +L ++    G GK+L   I    A+   G  V+++P+  L +   + +
Sbjct: 22  REIIEKVFQGKNVLAVMP--TGGGKSLCYQIP---ALMIPGATVVISPLISLMKDQVDSM 76

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLI 396
           ++Y     I    +  +  Q      L     G+  ++  T        F+  + + ++ 
Sbjct: 77  REYG----IPAAALNSSTAQEDVNPILRACYEGKIKLLYVTPERMEMDYFRYQLNFLEVN 132

Query: 397 LVIVDEQH---RFG-----VQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGD-IDI 445
           LV +DE H   ++G       ++LK    A  T P+VL +TAT      V   +G  +DI
Sbjct: 133 LVAIDEAHCISQWGHDFRPAYRKLKDGINALHTHPNVLALTATAT--KAVREDIGQQLDI 190

Query: 446 SK----ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           S+    IT         K V  P N    ++  LK    E    Y           SN R
Sbjct: 191 SEENFVITSFERKNLHFKLVNAPKNSRAYIVNYLKQHRGEAGIIY-----------SNTR 239

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             VE           ++A  H  MS+ ++  V D F+     L++AT    +GID  +  
Sbjct: 240 KKVEGLTEFLRREGFNVAAYHAGMSNEERAQVQDDFQYDRIPLIVATNAFGMGIDKSNVR 299

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            ++  N+    L   +Q  GR GR    S  ++L+HP
Sbjct: 300 FVLHANSAK-NLEAYYQEAGRAGRDGLESEAVMLFHP 335


>gi|149908416|ref|ZP_01897079.1| putative ATP-dependent RNA helicase DbpA [Moritella sp. PE36]
 gi|149808579|gb|EDM68514.1| putative ATP-dependent RNA helicase DbpA [Moritella sp. PE36]
          Length = 438

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 128/312 (41%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I QG  GSGKT    + +   ++      Q +++ P   LA Q  + I+K  +    I V
Sbjct: 19  IGQGKTGSGKTAAFGLGLLQRLDVERFRIQTLVLCPTRELADQVAKEIRKLARGIHNIKV 78

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF- 406
             + G MP   +  +LE   HG AHII+GT       L + +++   L   ++DE  R  
Sbjct: 79  LTLCGGMPFGPQIGSLE---HG-AHIIVGTPGRVLDHLTKGTLRLDNLTTFVLDEADRML 134

Query: 407 --GVQQRLK-LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP-----AGRKPI 458
             G Q  L  + +KA +    L+ +   P+ +   +      +KI   P     A     
Sbjct: 135 EMGFQDALDAIVEKAPSDRQTLLFSATFPKKIQAIA------AKIMNNPEMVEVASTHDD 188

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEH 513
            T+     ++    ERL  V             ++ K ES     N +  V+       H
Sbjct: 189 STIKQHFYKVKNFGERLDTVRG---------LLLQHKPESTVIFCNTKKDVQDVADELGH 239

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F  S+  +HG +   D++  +  F N +  +++AT V   G+D+     +I     H   
Sbjct: 240 FGFSVIALHGDLEQRDRDQALVRFSNKSISVMVATDVASRGLDIESLDAVINFQVSHDSE 299

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 300 IHVHRI-GRTGR 310


>gi|260830758|ref|XP_002610327.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
 gi|229295692|gb|EEN66337.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
          Length = 655

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 138/336 (41%), Gaps = 52/336 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKTL   I +   ++  G ++         ++AP   LA Q YE  K  +  
Sbjct: 131 ITQARTGTGKTLAFSIPLVERLQKDGVSIKRGRAPVVIVLAPTRELAIQVYEDFKSIS-- 188

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
           T++    + G  P   +  A+ R       I++GT    QD ++  +L L     V++DE
Sbjct: 189 TKLTSFCVYGGTPYPPQNDAINR----GLDILVGTPGRIQDHVRSGRLNLSELRHVVLDE 244

Query: 403 QHRF---GVQQRL--------KLTQKATAPHVLLMTAT------PIPRTLVLTSLGDIDI 445
             R    G+ +++        K   K+  P  L  +AT         R  +      +D+
Sbjct: 245 VDRMLEMGMVEQVDEILEAAYKKDDKSQNPQTLFFSATLPNWVHEAARKYMKAEPKHVDM 304

Query: 446 SKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
              TE+      ++ + I      R   + + + +   +  +A   C   E KKE+N + 
Sbjct: 305 IG-TEQNRSATTVEHLAIRCGWQARAPVIADIITMYSGQHGRAMVFC---ETKKEAN-QL 359

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           V+E              ++HG +    +E  + SF++G  ++L+AT V   G+D+ +  +
Sbjct: 360 VLEGV------LKQEAQVLHGDIPQAQRELTLKSFRDGNIQVLVATDVAARGLDIPEVDL 413

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ++         + +H+  GR GR      C+  Y P
Sbjct: 414 VVQCEPPSDVDSYIHR-SGRTGRAGRTGVCVCFYKP 448


>gi|38233323|ref|NP_939090.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38199582|emb|CAE49235.1| Putative ATP-dependent RNA helicase [Corynebacterium diphtheriae]
          Length = 436

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 155/365 (42%), Gaps = 38/365 (10%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VA 310
           P  VE  +A++I   +     K +  AI+++   ++   R L I Q   G GKT    V 
Sbjct: 8   PTFVELGVAREITDALATVGVK-RTFAIQELTLPIALDGRDL-IGQARTGMGKTYGFGVP 65

Query: 311 LI------AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           LI      A  A ++   +A+++ P   LA Q  + +K  ++N  I V  I G  P   +
Sbjct: 66  LIDRVFDAADVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQ 125

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLIL----VIV----DEQHRFGVQQRL-KLT 415
              LE        +++GT     D  Q   L L    V+V    DE    G    + KL 
Sbjct: 126 IAQLE----SGVDVVVGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLL 181

Query: 416 QKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKT--VIIPINRIDE 470
              T PH  ++ +  +P    TL  T +      +  +  A +    T  VI   +R+D+
Sbjct: 182 AALTHPHQTMLFSATMPGAVVTLARTFMHHPVHIRAEDTGAAQTHASTTQVIFQAHRMDK 241

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
                +++ +EG+    I  + +       R+  E  + L +     +A +HG +    +
Sbjct: 242 SAVTARILQAEGRGKTIIFARTK-------RTAAELADDLAQR-GFRVAGVHGDLGQSAR 293

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E+ +D+F+ G   +L+AT V   G+D+ D + +I        +  +H++ GR GR     
Sbjct: 294 EASLDAFRTGKAHILVATDVAARGLDIDDVTHVINYQTPDDPMTYVHRI-GRTGRAGHTG 352

Query: 591 SCILL 595
           + + L
Sbjct: 353 TAVTL 357


>gi|262370047|ref|ZP_06063374.1| primosomal protein N' [Acinetobacter johnsonii SH046]
 gi|262315086|gb|EEY96126.1| primosomal protein N' [Acinetobacter johnsonii SH046]
          Length = 740

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +P   Q+ AI++IL+     +  L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 201 LAQMPLAPNDEQKRAIQNILKVRHSYHAFL--LDGLTGSGKTEVYLQVMQEVLKQGKQVL 258

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q     + ++       + ++   +  + R +A +    G+A I+IGT +
Sbjct: 259 VLVPEIGLTPQT----VSRFQSRFHCHIALLHSGLNDSKRLQAWQSAQTGKASIVIGTRS 314

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                + +  L L+++DE+H    +Q+
Sbjct: 315 AIYTPLPH--LGLIVLDEEHDLSFKQQ 339


>gi|163744883|ref|ZP_02152243.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanibulbus indolifex HEL-45]
 gi|161381701|gb|EDQ06110.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanibulbus indolifex HEL-45]
          Length = 699

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 143/341 (41%), Gaps = 61/341 (17%)

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAP 329
           +A+++ + D +  +  L ++    GSGKT+   +A+A  +        +AG   A+I+AP
Sbjct: 18  TAVQEAVTDPALNDADL-LVSAQTGSGKTVGFGLAIAPTLLGDDTHFGQAGAPLALIIAP 76

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q    +         IV    G M     R+AL+R     AHI++ T     D 
Sbjct: 77  TRELAMQVSRELTWLYGKAGAIVTTCVGGMDTRTERRALDR----GAHIVVATPGRLCDH 132

Query: 390 IQYYKLIL-----VIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTS 439
           I+   + L     V++DE       G ++ L+  L++       LL +AT +P  +    
Sbjct: 133 IKRNNINLDAIRAVVLDEADEMLDLGFREDLEFILSESPEDRRTLLFSAT-VPAAIA--- 188

Query: 440 LGDIDISKITEKPAGRKPIKTV---------------IIPINRIDEVIERLKVVLSEGKK 484
                ++K  ++ A R  I TV               + P +  + +I  L+    E K 
Sbjct: 189 ----KLAKSYQRDAQR--ITTVGEAKQHSDIEYRALNVHPRDTENAIINVLR--FYEAKN 240

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A   C         N R+ V R  S   +   S+  + G ++  ++ + + + ++G  ++
Sbjct: 241 AIVFC---------NTRAAVARLTSRFTNRGFSVVALSGELTQSERTNALQALRDGRARV 291

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            IAT V   GID+ +  ++I  +        LH+  GR GR
Sbjct: 292 CIATDVAARGIDLPNLELVIHADLPSNSDTLLHR-SGRTGR 331


>gi|71421857|ref|XP_811932.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70876653|gb|EAN90081.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 631

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 142/331 (42%), Gaps = 52/331 (15%)

Query: 302 VGSGKTLVALIAMAAAVEAG------GQ-------AVIMAPIGILAQQHYEFIKKYTQNT 348
            GSGKT   LI + +++ +       GQ       A++MAP   L+ Q +E  +K+T  T
Sbjct: 177 TGSGKTAAYLIPLVSSILSNATPNHQGQGSRSSPAALVMAPTRELSIQIHEEGRKFTYRT 236

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQ 403
            I   ++ G     H+   L R       +++ T     D      + +  +  +++DE 
Sbjct: 237 GIRCVVVYGGADPRHQVHELSR----GCGLLVATPGRLWDVFTRGYVTFSSIRFMVLDEA 292

Query: 404 HRF---GVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKP 457
            R    G + ++++  +         +  P P   +TL+ ++    +I ++  +   R  
Sbjct: 293 DRMLDMGFEPQIRMIVQGQE------SDMPPPGQRQTLLYSATFPTEIQQLAREFLHRHY 346

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYW-----------ICPQIEEKKESNFRSVVER 506
              V    +  + + + ++ V    K+ +            I   +E+K+++++     R
Sbjct: 347 FLQVGRVGSTTENITQDVRWVEDNDKREHLLRLLHENQNQLILVFVEKKRDADYLERFLR 406

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            N +      + A IHG     ++E  +  FK+ +C++L+AT V   G+D+ D SI+I  
Sbjct: 407 NNRV------ACASIHGDRVQREREEALKMFKSASCQVLVATDVASRGLDIPDVSIVIQY 460

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +        +H++ GR GR  ++   I  ++
Sbjct: 461 DMPSNIDDYVHRI-GRTGRAGKVGRAISFFN 490


>gi|296116253|ref|ZP_06834870.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977187|gb|EFG83948.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 431

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 152/355 (42%), Gaps = 63/355 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV--------ALIAMAAAVEAGGQ 323
           +PT  Q  AI  +LQ       +L + Q   G+GKT           L +   A   G +
Sbjct: 24  TPTPIQAGAIPYLLQGRD----LLGLAQ--TGTGKTAAFALPILNHLLTSKGRAHPKGAR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHGQAH 377
           A+++AP   LA Q  +    Y ++ +    ++ G + Q  + +AL R       A G+  
Sbjct: 78  ALVLAPTRELASQIADSFASYARHMKFTHAVVFGGVGQGRQIEALRRGVDVLVAAPGRLL 137

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--ATAP---HVLLMTATPIP 432
            ++G     Q  +    L ++++DE  R      ++  +K  AT P     LL +AT +P
Sbjct: 138 DLMG-----QGHVDLAGLEILVLDEADRMLDMGFVRDIRKIVATLPTDRQTLLFSAT-MP 191

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI---- 488
           +++   + G +           R P    + P +   + I +  + +  G K   +    
Sbjct: 192 KSISELAHGLL-----------RDPATVQVTPPSSTVDRIRQAVMYVDTGNKREALKLLV 240

Query: 489 -CPQIEE-------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             P++E        K E+N    V  F  L+EH  ++ AI HG  S   +E  M  F++G
Sbjct: 241 DSPKVERAVVFTLMKHEAN---KVAAF--LNEHGITAEAI-HGNKSQGARERAMSGFRSG 294

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL--RGRVGR-GEEISSC 592
             K+L+AT +   GIDV D + +   +  +   + +H++    R GR G  +S C
Sbjct: 295 AVKVLVATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSLC 349


>gi|62289879|ref|YP_221672.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699806|ref|YP_414380.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189024121|ref|YP_001934889.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237815373|ref|ZP_04594371.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
 gi|254697319|ref|ZP_05159147.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730216|ref|ZP_05188794.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|260545377|ref|ZP_05821118.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260757905|ref|ZP_05870253.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260761727|ref|ZP_05874070.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|62196011|gb|AAX74311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615907|emb|CAJ10911.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Brucella melitensis biovar Abortus 2308]
 gi|189019693|gb|ACD72415.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237790210|gb|EEP64420.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
 gi|260096784|gb|EEW80659.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260668223|gb|EEX55163.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260672159|gb|EEX58980.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
          Length = 482

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 147/346 (42%), Gaps = 61/346 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+    +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE----RKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +  KL+L     +++DE  R        +      P +  +    P  R TL  +
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADR--------MLDMGFIPDIERICKLIPFTRQTLFFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDE-VIERL---------------KVVLSEG 482
           +    +I+K+TE+     P++  +   +   + V +RL                ++ SEG
Sbjct: 186 ATMPPEITKLTEQFL-HSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEG 244

Query: 483 ---KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
              K A   C        +  + V E F SL  H   + A+ HG M    + +++ SFK+
Sbjct: 245 DSLKNAIIFC--------NRKKDVSELFRSLTRHEFDAGAL-HGDMDQRARMAMLSSFKD 295

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR
Sbjct: 296 GKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGR 340


>gi|302308377|ref|NP_985263.2| AER408Wp [Ashbya gossypii ATCC 10895]
 gi|299789426|gb|AAS53087.2| AER408Wp [Ashbya gossypii ATCC 10895]
          Length = 398

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 164/379 (43%), Gaps = 76/379 (20%)

Query: 256 NVEGKIAQKILRNIPFSPT----KSQESAIKDILQ------DMSQKNRMLRILQG-DV-- 302
           N +GK+  K    +P SPT    K QE+ ++ I           Q   + +I++G DV  
Sbjct: 6   NQDGKLKVKTSSKLPVSPTFESMKLQENLLRGIYGYGFEAPSAIQSRAITQIIRGKDVIA 65

Query: 303 ----GSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
               G+GKT    I M   +++     QA++++P   LA Q  + ++       ++    
Sbjct: 66  QAQSGTGKTATFTIGMLQVIDSSSKDLQALVLSPTRELAAQISQVVRNLGDYMNVVALAC 125

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQ 410
           TG       ++ + ++  G  H++ GT     D I+        + ++++DE        
Sbjct: 126 TGGKA---LQQDISKVNKG-CHVMSGTPGRVLDMIKRRIINTRHVKMLVLDEADEL---- 177

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI---DISKITEKPAGRKPIKTVIIPINR 467
              L++       L    T +P ++ +  +      D+ ++T+K     P+K ++     
Sbjct: 178 ---LSETLGFKQQLYDIFTKLPSSVQVVVVSATMSKDVLEVTKKFMS-DPVKILV----- 228

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL----------------- 510
                +R +V L EG K Y I     +K+E  F ++ + ++SL                 
Sbjct: 229 -----KRDEVSL-EGIKQYHINV---DKEEWKFDTLCDLYDSLTITQCVIFCNTKKKVDW 279

Query: 511 --HEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             H+   ++ A+  IHG M   D++ VM  F++G+ ++LI+T V   GIDV   S++I  
Sbjct: 280 LSHKLIQNNFAVASIHGDMKQDDRDKVMSDFRSGSSRVLISTDVWARGIDVQQVSLVINY 339

Query: 567 NAEHFGLAQLHQLRGRVGR 585
           +        +H++ GR GR
Sbjct: 340 DLPELLENYIHRI-GRSGR 357


>gi|110638219|ref|YP_678428.1| ATP-dependent RNA helicase protein [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280900|gb|ABG59086.1| ATP-dependent RNA helicase protein [Cytophaga hutchinsonii ATCC
           33406]
          Length = 413

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 138/326 (42%), Gaps = 42/326 (12%)

Query: 303 GSGKT-------LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           G+GKT       L  LI +  +       ++MAP   LA Q  E  KK    T++    I
Sbjct: 48  GTGKTAAFVIPVLNTLINVKKSEHTDISCLVMAPTRELAVQISEVFKKIGAYTRLRTVCI 107

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR---FG 407
           TG + Q  +  A    A     I++ T       ++Q  I+  ++ ++++DE       G
Sbjct: 108 TGGVEQEAQIAA----ADYGIDILVATPGRMFDLIYQKHIKITRVKILVLDEADHMLDLG 163

Query: 408 VQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
             + ++  +K   A H          +TL  ++  + +I K+      + PI+  I P +
Sbjct: 164 FIKDIQDVKKFLPARH----------QTLFFSATINEEIKKLAYSLV-KNPIRIQIAPKD 212

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF----RSVV--ERFNSLHEHFTSSIAI 520
           R+ + I      +    K +++   ++E  ES      R+ V  +R  +  E        
Sbjct: 213 RVSKNITHSVAFIGMDDKRFFLERLLKEHPESKVIVFVRTQVRADRVQAAMERVGLKSVT 272

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG      +++ MD+FKNGT  +LIAT +   GID+     ++  +        +H++ 
Sbjct: 273 MHGGKEQQARDAAMDAFKNGTVHVLIATDISARGIDIAGVEYVVNYDMPEVAENYVHRV- 331

Query: 581 GRVGRGEE----ISSCILLYHPPLSK 602
           GR GRG      IS C +   P L +
Sbjct: 332 GRTGRGVSKGFAISFCSMEEKPVLDE 357


>gi|322376932|ref|ZP_08051425.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           M334]
 gi|321282739|gb|EFX59746.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           M334]
          Length = 447

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 137/315 (43%), Gaps = 31/315 (9%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT-- 356
            GSGKT   L+ +   ++      QAVI AP   LA Q Y+  ++   ++++ V ++   
Sbjct: 47  TGSGKTHTFLLPIFQQLDETSDSVQAVITAPSRELATQIYQAARQIAAHSEVEVRVVNYV 106

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQR 411
           G   +A   + ++++A  Q HI+IGT     D ++      +K    +VDE         
Sbjct: 107 GGTDKA---RQIDKLASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGF 163

Query: 412 LKLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           L+   K           ++ +AT IP+ L         + K    P   K IKT  +  +
Sbjct: 164 LETVDKIAGSLPKDLQFMVFSAT-IPQKLQPF------LKKYLSNPVMEK-IKTKTVISD 215

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHG 523
            ID  +   K    +  + Y +   ++      F +   R + LH + T+    +A IHG
Sbjct: 216 TIDNWLISTKG-RDKNAQIYQLTQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHG 274

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            ++  +++ +M+  KN   + ++AT +   GID+   S +I +         +H++ GR 
Sbjct: 275 DIAPRERKRIMNQVKNLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRT 333

Query: 584 GRGEEISSCILLYHP 598
           GR     + I LY P
Sbjct: 334 GRNGLPGTAITLYQP 348


>gi|254491400|ref|ZP_05104579.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010]
 gi|224462878|gb|EEF79148.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010]
          Length = 460

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 134/319 (42%), Gaps = 32/319 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKK---YTQNTQI 350
           I Q   GSGKT    I +   +     G QA+++ P   LA+Q  + I+K   +  N ++
Sbjct: 45  IAQAKTGSGKTAAFGIGLLQKLNPRFFGAQALVLCPTRELAEQVGKEIRKLARFMPNIKL 104

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +  ++ G  P   +  +LE   HG AHI++GT    QD ++   L L     +++DE  R
Sbjct: 105 V--MLCGGKPIGPQIGSLE---HG-AHIVVGTPGRVQDHLRKNTLKLDGLTTLVLDEADR 158

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                   L          ++  TP  R  +L S    D  +   +   R P+ TV +  
Sbjct: 159 M-------LDMGFADAMQAIIGQTPKNRQTLLFSATYPDTIQHMSRQIQRNPV-TVTVEA 210

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIA 519
               EVI+++   +S+  +   +       +      F    ++ + + +   +      
Sbjct: 211 EHNKEVIQQVFYEVSKHDRNTALLSLFAHYQPETCVVFCHTKKQCDDVADFLNNEQIDAL 270

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG +   D++ V+  F N +C +L+AT V   G+D+    ++I           +H++
Sbjct: 271 AIHGDLDQRDRDQVLVRFANNSCPVLVATDVAARGLDIKALQMVINYELPRDPEVYVHRI 330

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR  +    + +  P
Sbjct: 331 -GRTGRAGQTGLAMSIVTP 348


>gi|149203731|ref|ZP_01880700.1| primosome assembly protein PriA [Roseovarius sp. TM1035]
 gi|149142848|gb|EDM30890.1| primosome assembly protein PriA [Roseovarius sp. TM1035]
          Length = 721

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 35/158 (22%)

Query: 267 RNIPFSP----------TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           R+ PF P          T+ Q +A   +   +   +    +L+G  GSGKT V L A+A 
Sbjct: 183 RDTPFVPLDPDLPAKALTEDQAAAAARLRMGLQAGSYGTTLLRGVTGSGKTEVYLEAVAE 242

Query: 317 AVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ--------AHRRKA 367
           A+  GGQA+++ P I + A    EF+ +        VE+  G  P           RR+ 
Sbjct: 243 ALRQGGQALVLLPEIALTA----EFLTR--------VEVRFGTRPAEWHSGVTMTERRRV 290

Query: 368 LERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH 404
            + +  G A +++G   ALF   + +  L L++VDE+H
Sbjct: 291 WKMVGQGGAQMVVGARSALF---LPFQNLALIVVDEEH 325


>gi|152999025|ref|YP_001364706.1| primosomal protein N' [Shewanella baltica OS185]
 gi|304411530|ref|ZP_07393143.1| primosomal protein N' [Shewanella baltica OS183]
 gi|307306694|ref|ZP_07586436.1| primosomal protein N' [Shewanella baltica BA175]
 gi|151363643|gb|ABS06643.1| primosomal protein N' [Shewanella baltica OS185]
 gi|304350057|gb|EFM14462.1| primosomal protein N' [Shewanella baltica OS183]
 gi|306910662|gb|EFN41091.1| primosomal protein N' [Shewanella baltica BA175]
          Length = 731

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 19/191 (9%)

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNT 348
           Q+     +L+G  GSGKT V L  +   ++ G QA+I+ P IG+  Q    F +++  N 
Sbjct: 216 QQGYHCTLLEGITGSGKTEVYLAVLEEILKQGKQALILVPEIGLTPQTINRFKRRFKVNV 275

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            I+   +T N     R +A  +   GQA IIIGT +     + Y  +I  I+DE+H    
Sbjct: 276 AILHSGLTDN----QRLEAWRQARCGQAAIIIGTRSALFTPMAYPGII--ILDEEHDSSF 329

Query: 409 QQRLKLTQKA-----------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +Q+  +   A           + P V+L TATP   +L     G     ++ E+    K 
Sbjct: 330 KQQEGVGYHARDLAVMRGHLESIP-VILGTATPSLESLQNALSGRYHHLQLGERAGAAKK 388

Query: 458 IKTVIIPINRI 468
           ++  II I  +
Sbjct: 389 VRQGIIDIKNM 399


>gi|71650107|ref|XP_813758.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70878673|gb|EAN91907.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 630

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 142/331 (42%), Gaps = 52/331 (15%)

Query: 302 VGSGKTLVALIAMAAAVEAG------GQ-------AVIMAPIGILAQQHYEFIKKYTQNT 348
            GSGKT   LI + +++ +       GQ       A++MAP   L+ Q +E  +K+T  T
Sbjct: 176 TGSGKTAAYLIPLVSSILSNVTPNHQGQGSRSSPAALVMAPTRELSIQIHEEGRKFTYRT 235

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQ 403
            I   ++ G     H+   L R       +++ T     D      + +  +  +++DE 
Sbjct: 236 GIRCVVVYGGADPRHQVHELSR----GCGLLVATPGRLWDVFTRGYVTFSSIRFMVLDEA 291

Query: 404 HRF---GVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKP 457
            R    G + ++++  +         +  P P   +TL+ ++    +I ++  +   R  
Sbjct: 292 DRMLDMGFEPQIRMIVQGQE------SDMPPPGQRQTLLYSATFPTEIQQLAREFLHRHY 345

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYW-----------ICPQIEEKKESNFRSVVER 506
              V    +  + + + ++ V    K+ +            I   +E+K+++++     R
Sbjct: 346 FLQVGRVGSTTENITQDVRWVEDNDKREHLLRLLHENQNQLILVFVEKKRDADYLERFLR 405

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            N +      + A IHG     ++E  +  FK+ +C++L+AT V   G+D+ D SI+I  
Sbjct: 406 NNRV------ACASIHGDRVQREREEALKMFKSASCQVLVATDVASRGLDIPDVSIVIQY 459

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +        +H++ GR GR  ++   I  ++
Sbjct: 460 DMPSNIDDYVHRI-GRTGRAGKVGRAISFFN 489


>gi|326202886|ref|ZP_08192753.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325986963|gb|EGD47792.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 439

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 145/340 (42%), Gaps = 54/340 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA--MAAAVEAGG-QAVIMAP 329
           PT  Q+ AI + L     KNR + IL    G+GKTL  L+   M  +V+    QA+I+ P
Sbjct: 26  PTDIQQKAIPEEL-----KNRDV-ILHSSTGTGKTLAYLLPLFMKLSVDKKEMQALILVP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEI--ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
              LA Q    I+  +QN++I      I G++    +   L+     + HII+GT     
Sbjct: 80  THELAIQVERQIELLSQNSEIKATSTPIIGDVNIMRQMDKLKL----KPHIIVGTAGRIL 135

Query: 388 DSIQYYKLI-----LVIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           + IQ  K+       +I+DE  R         ++  +K T K      ++M +  I +  
Sbjct: 136 ELIQKKKISAHTIKTIIIDEADRLLDDYNLDSIKAVIKTTLKERQ---IVMCSATISKKT 192

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           V  ++           P  ++P+         + + IE L  V  + +K   +   +   
Sbjct: 193 VERAM-----------PLMKEPLIIESKSDMGVPDAIEHLYFVAEQREKIDVLRKLV--- 238

Query: 496 KESNFRSVVERFNSLHEHFTSSIAI---------IHGRMSDIDKESVMDSFKNGTCKLLI 546
           +  N +  +  F +  + F S   +         IHG     D++  MD FKNG  +LLI
Sbjct: 239 RMINPKKAIAFFANSEDIFVSEEKLRYHKLKAGGIHGSHIKSDRKKTMDDFKNGKLQLLI 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           A+ +   G+D+ D + I   N     +  LH++ GR GR 
Sbjct: 299 ASDIAARGLDIEDVTHIFNVNIPERSMDYLHRV-GRTGRN 337


>gi|306840451|ref|ZP_07473211.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
 gi|306289585|gb|EFM60800.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
          Length = 482

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 147/347 (42%), Gaps = 61/347 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+    +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE----RKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +  KL+L     +++DE  R        +      P +  +    P  R TL  +
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADR--------MLDMGFIPDIERICKLIPFTRQTLFFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDE-VIERL---------------KVVLSEG 482
           +    +I+K+TE+     P++  +   +   + V +RL                ++ SEG
Sbjct: 186 ATMPPEITKLTEQFL-HSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEG 244

Query: 483 ---KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
              K A   C        +  + V E F SL  H   + A+ HG M    + +++ SFK+
Sbjct: 245 DTLKNAIIFC--------NRKKDVSELFRSLTRHEFDAGAL-HGDMDQRARMAMLSSFKD 295

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR 
Sbjct: 296 GKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRA 341


>gi|120600410|ref|YP_964984.1| primosomal protein N' [Shewanella sp. W3-18-1]
 gi|120560503|gb|ABM26430.1| primosomal protein N' [Shewanella sp. W3-18-1]
          Length = 731

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 10/150 (6%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q +L   P    K Q  A+  + Q   Q+     +L+G  GSGKT V L  +   ++ G 
Sbjct: 192 QLVLDETPHRLNKEQAIAVTILNQ---QQGYHCTLLEGITGSGKTEVYLAVLEEILKQGK 248

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+I+ P IG+  Q    F +++  N  ++   +T N     R +A  +   GQA IIIG
Sbjct: 249 QALILVPEIGLTPQTINRFKRRFKVNVAVLHSGLTDN----QRLEAWRQARCGQAAIIIG 304

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           T +     + Y  +I  I+DE+H    +Q+
Sbjct: 305 TRSALFTPMAYPGII--ILDEEHDSSFKQQ 332


>gi|313123505|ref|YP_004033764.1| ATP-dependent DNA helicase recq [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280068|gb|ADQ60787.1| ATP-dependent DNA helicase RecQ [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 589

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 141/348 (40%), Gaps = 49/348 (14%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F P +S+      I++ + Q   +L ++    G GK+L   I    A+   G  V+++P+
Sbjct: 17  FRPGQSE------IIEKVFQGKNVLAVMP--TGGGKSLCYQIP---ALMIPGTTVVISPL 65

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HAL 385
             L +   + +++Y     I    +  +  Q      L     G+  ++  T        
Sbjct: 66  ISLMKDQVDSLREYG----IPAAALNSSTAQEDVNPILRACYEGKIKLLYVTPERMEMDY 121

Query: 386 FQDSIQYYKLILVIVDEQH---RFG-----VQQRLKLTQKA--TAPHVLLMTATPIPRTL 435
           F+  + + ++ LV +DE H   ++G       ++LK    A  T P+VL +TAT      
Sbjct: 122 FRYQLNFLEVNLVAIDEAHCISQWGHDFRPAYRKLKDGINALHTHPNVLALTATAT--KA 179

Query: 436 VLTSLGD-IDISK----ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           V   +G  +DIS+    IT         K V  P N    ++  LK    E    Y    
Sbjct: 180 VREDIGQQLDISEENFVITSFERKNLHFKLVNAPKNSRAYIVNYLKQHRGEAGIIY---- 235

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  SN R  VE           ++A  H  MS+ ++  V D F+     L++AT  
Sbjct: 236 -------SNTRKKVEGLTEFLRRKGFNVAAYHAGMSNEERAQVQDDFQYDRIPLIVATNA 288

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             +GID  +   ++  N+    L   +Q  GR GR    S  ++L+HP
Sbjct: 289 FGMGIDKSNVRFVLHANSAK-NLEAYYQEAGRAGRDGLESEAVMLFHP 335


>gi|312079251|ref|XP_003142094.1| hypothetical protein LOAG_06510 [Loa loa]
 gi|307762742|gb|EFO21976.1| hypothetical protein LOAG_06510 [Loa loa]
          Length = 798

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 158/394 (40%), Gaps = 74/394 (18%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIM 327
           + P+K QE+A+  +L +      M  I Q   G+GKT   ++ M + V       Q + +
Sbjct: 424 YMPSKIQEAALPLLLVEPP----MNLIAQAQSGTGKTATFVLTMLSRVVPSNKWPQCLCL 479

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL--ERIAHGQ---AHIIIGT 382
           AP   LA Q  + +KK ++            +P+   R A+  ER++ G+     IIIGT
Sbjct: 480 APTYELAMQIGQVVKKMSEF-----------LPEIEIRYAIKGERMSRGEKIEEQIIIGT 528

Query: 383 HALFQDS------IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
                D       I   K+I +++DE      QQ  +   ++   H  L  +    ++L+
Sbjct: 529 PGKMLDWVTKLKVIDPSKIICLVLDEADVMISQQGHQ--DQSIRLHNELEKSGAKYQSLL 586

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++  D ++    +            I  + ++  + R +  L   K+ Y  C   EEK 
Sbjct: 587 FSATYDENVRSFADS-----------IIKDAVNITLRRDEQTLKNIKQYYVKCANREEKY 635

Query: 497 ESNF-----------------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           E+                   R   E   +        + ++HG M+  D+   +  FK+
Sbjct: 636 EAVMNLYGGLTIASAIIFCYTRKSAEWLAARMGQRGHDVTVLHGEMTIEDRARTIQQFKD 695

Query: 540 GTCKLLIATTVIEVGIDVVDASIII--------IENAEHFGLAQLHQLRGRVGRGEEISS 591
              K+LI T V   GIDV   S++I        ++N +      +H++ GR GR  +   
Sbjct: 696 SVYKVLITTNVCARGIDVSQVSVVINYDPPVTYVDNPQPDYETYIHRI-GRTGRFGKAGI 754

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            I L     S      LSV++   D F +A E L
Sbjct: 755 AINLVSDDFS------LSVIQRIGDYFGVAIESL 782


>gi|289342912|ref|NP_001166066.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Bos taurus]
 gi|284794217|gb|ADB93367.1| DEAD box polypeptide 3 Y-linked short isoform [Bos taurus]
 gi|296470425|gb|DAA12540.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Bos taurus]
          Length = 660

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 166/397 (41%), Gaps = 78/397 (19%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-------------IAQKILRNI 269
           P  ERL  +    G   +      F+K   IP+ V G              + + I+ NI
Sbjct: 141 PPSERLEQELFSGGNTGI-----NFEKYDDIPVEVTGNNCPPHIESFSDVAMGEIIMGNI 195

Query: 270 PFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI------------- 312
             +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+             
Sbjct: 196 ELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPILSQIYTDGPGE 249

Query: 313 AMAAAVEAG--GQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           A+ A  E+G  G+      ++++AP   LA Q YE  +K++  ++++  ++ G      +
Sbjct: 250 ALKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVYGGADIGQQ 309

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKL 414
            + LER      H+++ T     D ++  K+ L     +++DE  R     F  Q R  +
Sbjct: 310 IRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRII 365

Query: 415 TQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINR 467
            Q    P    H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  
Sbjct: 366 EQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEE 424

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
            D+    L ++ + G  +  +   +E KK ++    +E F   HE +  +   IHG  S 
Sbjct: 425 ADKRSFLLDLLNATGTDSLTLV-FVETKKGAD---SLEDF-LYHEGY--ACTSIHGDRSQ 477

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 478 RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|284794215|gb|ADB93366.1| DEAD box polypeptide 3 Y-linked long isoform [Bos taurus]
          Length = 661

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 166/397 (41%), Gaps = 78/397 (19%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-------------IAQKILRNI 269
           P  ERL  +    G   +      F+K   IP+ V G              + + I+ NI
Sbjct: 141 PPSERLEQELFSGGNTGI-----NFEKYDDIPVEVTGNNCPPHIESFSDVAMGEIIMGNI 195

Query: 270 PFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI------------- 312
             +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+             
Sbjct: 196 ELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPILSQIYTDGPGE 249

Query: 313 AMAAAVEAG--GQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           A+ A  E+G  G+      ++++AP   LA Q YE  +K++  ++++  ++ G      +
Sbjct: 250 ALKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVYGGADIGQQ 309

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKL 414
            + LER      H+++ T     D ++  K+ L     +++DE  R     F  Q R  +
Sbjct: 310 IRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRII 365

Query: 415 TQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINR 467
            Q    P    H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  
Sbjct: 366 EQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEE 424

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
            D+    L ++ + G  +  +   +E KK ++    +E F   HE +  +   IHG  S 
Sbjct: 425 ADKRSFLLDLLNATGTDSLTLV-FVETKKGAD---SLEDF-LYHEGY--ACTSIHGDRSQ 477

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 478 RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|197692141|dbj|BAG70034.1| ATP-dependent RNA helicase DDX3X [Homo sapiens]
 gi|197692387|dbj|BAG70157.1| ATP-dependent RNA helicase DDX3X [Homo sapiens]
          Length = 662

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVGATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 413

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 414 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 466

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|296121629|ref|YP_003629407.1| primosomal protein N' [Planctomyces limnophilus DSM 3776]
 gi|296013969|gb|ADG67208.1| primosomal protein N' [Planctomyces limnophilus DSM 3776]
          Length = 768

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 10/138 (7%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGIL 333
           ++Q SA+  +++ ++       +L G  GSGKT V +  +   V  G QA+++ P I + 
Sbjct: 233 RNQHSAVTRVIESLASGKSETFLLYGVTGSGKTEVYIRVIEEVVRYGRQAIVLVPEISLT 292

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            Q    F K++       V ++  ++  A R    ++IA GQ  +I+G   A+F  +   
Sbjct: 293 PQTIRRFRKRFAS-----VAVLHSHLSDAERHSYWQQIARGQVQVIVGARSAIFAPAP-- 345

Query: 393 YKLILVIVDEQHRFGVQQ 410
             L LV++DE+H    +Q
Sbjct: 346 -NLGLVVIDEEHETSFKQ 362


>gi|308198048|ref|XP_001386798.2| RNA helicase required for poly(A+) mRNA export [Scheffersomyces
           stipitis CBS 6054]
 gi|284018078|sp|A3GH91|DBP5_PICST RecName: Full=ATP-dependent RNA helicase DBP5
 gi|149388830|gb|EAZ62775.2| RNA helicase required for poly(A+) mRNA export [Pichia stipitis CBS
           6054]
          Length = 500

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 147/341 (43%), Gaps = 54/341 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           P+K QE A+  ++ +  +      I Q   G+GKT    + M + V+      Q + +AP
Sbjct: 133 PSKIQEKALPLLISNPPRN----MIGQSQSGTGKTAAFSLTMLSRVDPKVPSTQCLCLAP 188

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E I    + T I  ++I  +        AL R +   AHII+GT  +  D 
Sbjct: 189 TRELARQTLEVISTMGKFTNITTQLIVPD--------ALPRGSSTNAHIIVGTPGIVMDL 240

Query: 390 IQYYKL------ILVIVDEQHRFGVQQ------RLKLTQKATAPHVLLMTATPIP-RTLV 436
           I+  ++      + V+ +  +    Q       R+K T   T   VL     P   R   
Sbjct: 241 IRRKQINVNGVKVFVLDEADNMLDAQGLGDQCVRVKRTLPKTTQLVLFSATFPTKVRQYA 300

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRID---EVIERLKVVLSEGKKAYWICPQIE 493
              + + +  ++ ++      IK + +  +      EV+  L  +L+ G    ++     
Sbjct: 301 EKFVPNANSLELKQEELNVDGIKQLYMDCDSEKHKFEVLCELYGLLTIGSSIIFV----- 355

Query: 494 EKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E+K++         N L+    +   + +I+HG +   +++ ++D F+ G  K+LI T V
Sbjct: 356 ERKDT--------ANLLYAKMKAEGHACSILHGGLETSERDRLIDDFREGRSKVLITTNV 407

Query: 551 IEVGIDVVDASIIIIEN--AEHFGLAQ----LHQLRGRVGR 585
           +  GID+   S+++  +   +  G A     LH++ GR GR
Sbjct: 408 LARGIDIASVSMVVNYDLPTDKDGNADPSTYLHRI-GRTGR 447


>gi|325684264|gb|EGD26437.1| ATP-dependent helicase RecQ [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 589

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 141/348 (40%), Gaps = 49/348 (14%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F P +S+      I++ + Q   +L ++    G GK+L   I    A+   G  V+++P+
Sbjct: 17  FRPGQSE------IIEKVFQGKNVLAVMP--TGGGKSLCYQIP---ALMIPGTTVVISPL 65

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HAL 385
             L +   + +++Y     I    +  +  Q      L     G+  ++  T        
Sbjct: 66  ISLMKDQVDSLREYG----IPAAALNSSTAQEDVNPILRACYEGKIKLLYVTPERMEMDY 121

Query: 386 FQDSIQYYKLILVIVDEQH---RFG-----VQQRLKLTQKA--TAPHVLLMTATPIPRTL 435
           F+  + + ++ LV +DE H   ++G       ++LK    A  T P+VL +TAT      
Sbjct: 122 FRYQLNFLEVNLVAIDEAHCISQWGHDFRPAYRKLKDGINALHTHPNVLALTATAT--KA 179

Query: 436 VLTSLGD-IDISK----ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           V   +G  +DIS+    IT         K V  P N    ++  LK    E    Y    
Sbjct: 180 VREDIGQQLDISEENFVITSFERKNLHFKLVNAPKNSRAYIVNYLKQHRGEAGIIY---- 235

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  SN R  VE           ++A  H  MS+ ++  V D F+     L++AT  
Sbjct: 236 -------SNTRKKVEGLTEFLRRKGFNVAAYHAGMSNEERAQVQDDFQYDRIPLIVATNA 288

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             +GID  +   ++  N+    L   +Q  GR GR    S  ++L+HP
Sbjct: 289 FGMGIDKSNVRFVLHANSAK-NLEAYYQEAGRAGRDGLESESVMLFHP 335


>gi|301165769|emb|CBW25341.1| putative RNA helicase dead-box protein [Bacteriovorax marinus SJ]
          Length = 591

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 155/337 (45%), Gaps = 48/337 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           SPT  QE AI  +L+  +       + Q   G+GKT    + + A +++     QA++++
Sbjct: 23  SPTDIQEKAIPLLLEKDTD-----FVGQAQTGTGKTAAFSLPLLAKIDSKSGDVQAIVLS 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E +K + +  +I +  + G +P   + + L++   G+  +++GT     D
Sbjct: 78  PTRELANQITEEMKSFCKYEKIKILSVYGGVPLDGQIRTLKK---GRPQVVVGTPGRVLD 134

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPR---TL 435
            I+   L        +L   DE    G    +K  L++        + +AT +P+   +L
Sbjct: 135 LIKRGVLKLENAKLAVLDEADEMLDMGFIDDVKTILSELGDKKKTWMYSAT-MPKAILSL 193

Query: 436 VLTSLGDIDISKITEKPAGRKPI--KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           + + L + ++ KI +K    + I  K  +I    + E + R+   L++     +   +I+
Sbjct: 194 IKSYLNEPEVIKIEKKTLSNEDIEQKYFLIKRGNLGEAVCRILDSLTDYYGIVFCRTKID 253

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            KK S+       FN  +  F S    +HG MS   ++  M +FK    KLL+ T V   
Sbjct: 254 AKKLSD------EFN--YRGFPSDA--LHGDMSQTQRDLTMRAFKKKKVKLLVCTDVAAR 303

Query: 554 GIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVGR 585
           GIDV + + +I     ++GL Q     +H++ GR GR
Sbjct: 304 GIDVDNLTHVI-----NYGLPQDLESYVHRI-GRTGR 334


>gi|319651055|ref|ZP_08005189.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317397225|gb|EFV77929.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 481

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 149/345 (43%), Gaps = 40/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT+ Q   I      ++ KN+ L +++   GSGKT    I ++  VE      QA+I+ 
Sbjct: 26  TPTEVQSEVIP-----LAMKNQDL-VVKAQTGSGKTASFGIPVSDMVEWEEKKPQAIILT 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I    +  +I    + G  P + ++  L++    + H+++GT     D
Sbjct: 80  PTRELAVQVREDITNIGRFKRIKAVAVYGKEPFSKQKDELKQ----KTHVVVGTPGRVMD 135

Query: 389 SIQYYKLIL-----VIVDEQ----HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
            I+   LIL     +I+DE     +R  + +   + ++  +  V ++ +  +P+      
Sbjct: 136 HIERETLILDQIKYLIIDEADEMLNRGFIDEVEAIIKELPSNRVTMVFSATLPK------ 189

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP-QIEEKKES 498
               D+  +  K   + PI+  I       + IE   + + E +K   +    + E  +S
Sbjct: 190 ----DVENLCHKYM-KDPIQIKIESTKVTADTIEHSLIEVREEEKISLLKDVTVVENPDS 244

Query: 499 N--FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    E  ++++     +      +HG +   D+ SVM+ FK G  + L+AT V   
Sbjct: 245 CLIFCRTKEHVDTVYSELDKAGYPCERLHGGLEQEDRFSVMEGFKLGNFRYLVATDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GID+ + +++I  +      + +H+  GR GR       I    P
Sbjct: 305 GIDIDNVTLVINYDVPMEKESYVHRT-GRTGRAGNKGKAITFSTP 348


>gi|167515852|ref|XP_001742267.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778891|gb|EDQ92505.1| predicted protein [Monosiga brevicollis MX1]
          Length = 591

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 126/298 (42%), Gaps = 40/298 (13%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           +A+ MAP   LA Q     K++      +    + G  P   +  A+ R       +IIG
Sbjct: 74  RALCMAPTRELAHQ---VGKEFADIGPSLASTCVYGGAPYMPQESAIRR----GLDVIIG 126

Query: 382 THALFQDSIQYYKLIL-----VIVDEQHRFGVQ---------QRLKLTQKATAPHVLLMT 427
           T    +D +    L L     +I+DE  R   Q         Q++ + Q    P ++L +
Sbjct: 127 TPGRLKDHLDKGTLKLTDIKYLILDEADRMLEQGFVEAIDEIQKMTIAQSGGKPQMILFS 186

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           AT +P   +L+++ +   + +T        + TV    NR  + ++ L +     ++   
Sbjct: 187 AT-MP-DFILSTVKNYMPNHVT--------VDTVGSSRNRTSKGVDHLAIKCPWTERRAV 236

Query: 488 ICPQIEEKKESNFRSVV-----ERFN--SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           I   ++    ++ R+++     +  N  +L       + ++HG +    +E  + +F++G
Sbjct: 237 IADVVQMYSGAHGRTIIFTQTKKDANELALETDLRQEVQVLHGDIPQKQREMSLQAFRDG 296

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + L+AT V   G+D+ +  +++         + +H+  GR GR     +CI  Y P
Sbjct: 297 KVRCLVATDVAARGLDIPEVDLVVQCEPPKDVESYIHR-SGRTGRAGRTGTCICFYKP 353


>gi|322818320|gb|EFZ25769.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 631

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 142/331 (42%), Gaps = 52/331 (15%)

Query: 302 VGSGKTLVALIAMAAAVEAG------GQ-------AVIMAPIGILAQQHYEFIKKYTQNT 348
            GSGKT   LI + +++ +       GQ       A++MAP   L+ Q +E  +K+T  T
Sbjct: 177 TGSGKTAAYLIPLVSSILSNVTPNHQGQGSRSSPAALVMAPTRELSIQIHEEGRKFTYRT 236

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQ 403
            I   ++ G     H+   L R       +++ T     D      + +  +  +++DE 
Sbjct: 237 GIRCVVVYGGADPRHQVHELSR----GCGLLVATPGRLWDVFTRGYVTFSSIRFMVLDEA 292

Query: 404 HRF---GVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKP 457
            R    G + ++++  +         +  P P   +TL+ ++    +I ++  +   R  
Sbjct: 293 DRMLDMGFEPQIRMIVQGQE------SDMPPPGQRQTLLYSATFPTEIQQLAREFLHRHY 346

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYW-----------ICPQIEEKKESNFRSVVER 506
              V    +  + + + ++ V    K+ +            I   +E+K+++++     R
Sbjct: 347 FLQVGRVGSTTENITQDVRWVEDNDKREHLLRILHENQNQLILVFVEKKRDADYLERFLR 406

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            N +      + A IHG     ++E  +  FK+ +C++L+AT V   G+D+ D SI+I  
Sbjct: 407 NNRV------ACASIHGDRVQREREEALKMFKSASCQVLVATDVASRGLDIPDVSIVIQY 460

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +        +H++ GR GR  ++   I  ++
Sbjct: 461 DMPSNIDDYVHRI-GRTGRAGKVGRAISFFN 490


>gi|319935450|ref|ZP_08009887.1| helicase [Coprobacillus sp. 29_1]
 gi|319809666|gb|EFW06079.1| helicase [Coprobacillus sp. 29_1]
          Length = 455

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 156/347 (44%), Gaps = 46/347 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAVEAGGQAVIMA 328
           SPTK Q    K+I+  + ++  ++ I Q   G+GKT   L+ ++ M        QAVI A
Sbjct: 24  SPTKIQ----KEIIPLVYKQRDIIGISQ--TGTGKTHAFLIPIMDMIDVTSDCVQAVITA 77

Query: 329 PIGILAQQHYEFIK---KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q YE  K   KY Q+ ++ + II G    + ++KA++++   Q HI+IGT   
Sbjct: 78  PTRELASQIYEHAKLFMKYNQDLRVSL-IIGG----SDKQKAIDKLTI-QPHIVIGTPGR 131

Query: 386 FQD------SIQYYKLILVIVDEQH---RFGVQQRLKLTQKATAPHVLLMT-ATPIP--- 432
            +D      +++     + ++DE      FG  + +         ++ +M  +  IP   
Sbjct: 132 IKDLSLDEQALKITTADVFVIDEADMTLEFGYLEDIDAVLGKMKENLQMMVFSATIPQML 191

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICP 490
           R  +   + +  + +I E+    + +   +IP    D  ++++++  ++       +IC 
Sbjct: 192 RPFLQKYMQNPKLVEIDEELTTTRNVSHYLIPTKHRDRYQILKQIMGIIDP-----YICL 246

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
               K+       ++  N  ++     +  IHG +   ++  +M   KN   + ++AT +
Sbjct: 247 VFCNKRTEAADLTMKLRNDGYK-----VGEIHGDLEPRERRQMMRRIKNMDYQYIVATDI 301

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILLY 596
              GID+  AS II  N E       +  R GR GRG+    C  +Y
Sbjct: 302 AARGIDIDGASHII--NMEFPTELDFYIHRSGRCGRGKYTGECYSMY 346


>gi|227890675|ref|ZP_04008480.1| primosomal replication protein n [Lactobacillus salivarius ATCC
           11741]
 gi|227867613|gb|EEJ75034.1| primosomal replication protein n [Lactobacillus salivarius ATCC
           11741]
          Length = 792

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/415 (19%), Positives = 155/415 (37%), Gaps = 97/415 (23%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q   +K +  D+      + +LQG  GSGKT V L  +  A+  G  A+++ P   L
Sbjct: 257 TQEQSKVVKKLDDDIENDKARVSLLQGVTGSGKTEVYLQVIDTALNQGKTAIVLVPEISL 316

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             Q    +K++       V ++   +    +     RI   +A +++G  +     ++  
Sbjct: 317 TPQ---MVKRFRARFGTKVAVLHSGLSIGEKYDEWRRIEREEAQVVVGARSAIFAPLK-- 371

Query: 394 KLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L ++IVDE+H          R+  +   K      +  V+  +ATP   +      G  
Sbjct: 372 NLGVIIVDEEHESSYKQDEMPRYNAKDVAKWRGIYHSCPVIFGSATPSLESRARAQKGVY 431

Query: 444 DISKITEKPAG-----------RKPIKTVIIP------INRIDEVIERL-KVVLSEGKKA 485
           D  ++T++              R+ +KT  IP      +N I E +++  ++VL   ++ 
Sbjct: 432 DWLRLTKRVNNQKLPKVQIIDMREAVKTSPIPDFSLKMVNSIQEKLDKKEQIVLLLNRRG 491

Query: 486 Y-------------------------------------------WICPQIEEKKESNFRS 502
           Y                                           + CP    KK   + +
Sbjct: 492 YSTFMMCRECGYVIKCPNCDISLTVHLDSRSLKCHYCGYETRIPYECPSCSSKKIRYYGT 551

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDK-------ESVMDSFKNGTCKLLIATTVIEVGI 555
             ++     +       I+  RM D+D        E ++ +F +G   +L+ T +I  G+
Sbjct: 552 GTQKIEKELKGLFPQARIL--RM-DVDTTRKKGAYEKLLRTFGDGKADILLGTQMIAKGL 608

Query: 556 DVVDASIIIIENAE-HFGLAQ----------LHQLRGRVGRGEEISSCILLYHPP 599
           D  + + + + NA+   G++           L Q+ GR GR ++    I+    P
Sbjct: 609 DFPNVTFVGVLNADTSLGISDFRASERTFQLLTQVSGRAGRADKDGEVIIQTFNP 663


>gi|188588593|ref|YP_001920789.1| cold-shock deAd box protein a [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498874|gb|ACD52010.1| cold-shock deAd box protein a [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 367

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 152/349 (43%), Gaps = 53/349 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +PT  QE +I  IL   S K+    I +   G+GKTL  L+ +   +     G Q +I++
Sbjct: 23  TPTAIQEESIPKIL---SGKDV---IGEAKTGTGKTLAFLLPIFQNISPDTNGTQVLILS 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E  KK   N  I +    G      + K L+       H++I T     D
Sbjct: 77  PTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLKKLKH----NVHLVIATPGRLLD 132

Query: 389 -----SIQYYKLILVIVDEQHRF---GVQQRL-KLTQKATAPHVLLMTATPIPRTLVLTS 439
                +I   KL  +++DE  +    G +  + K+ + A+  H          +TL  ++
Sbjct: 133 HIDRKTIDLSKLKTIVIDEADQMLLMGFKNDIEKIMKVASKKH----------QTLCFSA 182

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK---VVLSEGKKAYWICPQIEEKK 496
             D  + K+    A R  I  + I I      ++++K   V  ++  K   +C  ++E  
Sbjct: 183 TMDSQVKKL----AYRYMIDPLFIDIKSPTIAVDKIKQQVVETTDRWKQDSLCATLQE-- 236

Query: 497 ESNFRSVV-----ERFN----SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           ++ F +++      R +    +LH+   +    IH  +    +E +M SF+N   + LIA
Sbjct: 237 DNPFMAIIFCRTKRRADVLEIALHQKGLNC-QKIHSDVPQAKRERIMKSFRNADIQYLIA 295

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILL 595
           T V   GID+   S I   +      + +H++ GR GR GE+  +C+ +
Sbjct: 296 TDVAARGIDISGVSHIYNYDTPETPESYIHRI-GRTGRAGEDGYTCMFV 343


>gi|318040201|ref|ZP_07972157.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0101]
          Length = 537

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 145/344 (42%), Gaps = 39/344 (11%)

Query: 273 PTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIM 327
           P+  Q++AI ++L  +D+        + Q   G+GKT    + M AA++      Q +++
Sbjct: 101 PSPIQKAAIPELLLGRDL--------VGQAQTGTGKTAAFALPMLAALDGQQRTPQVLVL 152

Query: 328 APIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P   LA Q  +  K Y  N   + V  + G    +  R  + R+  G   I++GT    
Sbjct: 153 TPTRELAIQVADAFKSYAANMPHLRVLPLYGG---SDFRDQIVRLKRG-VQIVVGTPGRV 208

Query: 387 QDSIQ--------YYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP--RT 434
            D ++           L+L   DE  R G    ++  L Q  +   V+L +AT  P  R 
Sbjct: 209 MDHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVEWVLEQLPSQRQVVLFSATMPPEIRR 268

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    L D     I  K A    I+   I +N   ++    +V+ SE K+   I      
Sbjct: 269 ISHKYLNDPAEVTIKTKGADSSRIRQRFITVNGPQKLEALTRVLESETKEGVIIF----- 323

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
              +  +++        E     +A+++G ++   +E  ++  KNGT  +L+AT V   G
Sbjct: 324 ---ARTKAITVTVAEALEAKGYDVAVLNGDVAQSQRERTIERLKNGTVDVLVATDVAARG 380

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +DV   ++++  +      A +H++ GR GR       IL   P
Sbjct: 381 LDVDRITLVVNYDIPFDSEAYVHRV-GRTGRAGRSGDAILFVTP 423


>gi|103486540|ref|YP_616101.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
 gi|98976617|gb|ABF52768.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
          Length = 458

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 150/363 (41%), Gaps = 47/363 (12%)

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKT------L 308
           ++ ++LR I  S    PT  Q  AI  +L        M+R + G    G+GKT      +
Sbjct: 8   LSDELLRAIDESGYSEPTAIQAGAIPSVL--------MMRDMIGIAQTGTGKTASFVLPM 59

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           + ++A   A     +++I+ P   LA Q  E  +KY +  ++ + ++ G +    + KAL
Sbjct: 60  IDILAHGRARALMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQIKAL 119

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
           E+       ++I T     D  +  K++L     +++DE  R        +      P +
Sbjct: 120 EK----GVDVLIATPGRLMDLFERGKILLTGCNLLVIDEADR--------MLDMGFIPDI 167

Query: 424 L-LMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             + T  P  R TL+ ++     I K+ +K         V  P +R +E IE+  V  SE
Sbjct: 168 ENICTKLPANRQTLLFSATMPPPIKKLADKFLSNPKTIEVARPASR-NENIEQFVVKTSE 226

Query: 482 GKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             K   +   IE +  S      N ++ V       +        IHG M    + + +D
Sbjct: 227 RGKRDTLRGLIEAEDLSTAIVFCNRKTTVRELAKSLQRSGYRAGEIHGDMDQSSRIAELD 286

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK GT  +L+A+ V   G+DV   S +   +A       +H++ GR GR         L
Sbjct: 287 RFKAGTINILVASDVAARGLDVKGVSHVFNFDAPWHPDDYVHRI-GRTGRAGAQGRAFTL 345

Query: 596 YHP 598
             P
Sbjct: 346 VTP 348


>gi|74006722|ref|XP_861268.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 3 [Canis familiaris]
 gi|74006724|ref|XP_861300.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 4 [Canis familiaris]
 gi|74006730|ref|XP_861379.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 6 [Canis familiaris]
 gi|74006732|ref|XP_538003.2| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 1 [Canis familiaris]
          Length = 662

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 413

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 414 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 466

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|87196351|ref|NP_001347.3| ATP-dependent RNA helicase DDX3X isoform 1 [Homo sapiens]
 gi|3023628|sp|O00571|DDX3X_HUMAN RecName: Full=ATP-dependent RNA helicase DDX3X; AltName: Full=DEAD
           box protein 3, X-chromosomal; AltName: Full=DEAD box, X
           isoform; AltName: Full=Helicase-like protein 2;
           Short=HLP2
 gi|2148924|gb|AAB95637.1| helicase like protein 2 [Homo sapiens]
 gi|3523150|gb|AAC34298.1| DEAD box RNA helicase DDX3 [Homo sapiens]
 gi|15080078|gb|AAH11819.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Homo sapiens]
 gi|57209229|emb|CAI41416.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Homo sapiens]
 gi|119579806|gb|EAW59402.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579807|gb|EAW59403.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579808|gb|EAW59404.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579809|gb|EAW59405.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|158255742|dbj|BAF83842.1| unnamed protein product [Homo sapiens]
 gi|168277370|dbj|BAG10663.1| ATP-dependent RNA helicase DDX3X [synthetic construct]
          Length = 662

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 413

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 414 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 466

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|153005772|ref|YP_001380097.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029345|gb|ABS27113.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 585

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 132/328 (40%), Gaps = 52/328 (15%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQ-HYEFIKKYTQNTQII 351
            GSGKT+   +A+A  +        EAG   A+++AP   LA Q   E    +      +
Sbjct: 48  TGSGKTVAFGLALAETLLGDADAFGEAGPPGALVVAPTRELAVQVQRELAWLFADAGGRV 107

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQ 403
              + G  P    R+    +A G  H+++GT     D ++           L+L   DE 
Sbjct: 108 ASCVGGMDP----RREARALAEGT-HVVVGTPGRLVDHLERGALDLSALRALVLDEADEM 162

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGRKPIKT 460
              G ++ L+    A  P    +L +AT +PR ++ L      D S+I   PAG      
Sbjct: 163 LDMGFREELEKLLGAAPPDRRTVLFSAT-LPRPILELAKRYTRDASRIAATPAGEAHADI 221

Query: 461 -----VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN----SLH 511
                V+ P  R   V+     VL E +    +           FR+  E       SL 
Sbjct: 222 AYRAHVVAPREREHAVVN----VLREAEPPSALV----------FRATREAVQHTAVSLG 267

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E     +AI  G ++  ++   + S ++G  ++L+AT V   G+D+   ++++  +    
Sbjct: 268 ERGFEVVAI-SGELTQAERTRALKSLRDGRARVLVATDVAARGLDLPGIALVLHADLPRD 326

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPP 599
             A  H+  GR GR       +LL  PP
Sbjct: 327 AEALQHR-SGRTGRAGRKGVAVLLAAPP 353


>gi|41282082|ref|NP_571016.2| pl10 [Danio rerio]
 gi|37590512|gb|AAH59794.1| Pl10 [Danio rerio]
          Length = 688

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 168/411 (40%), Gaps = 82/411 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           + +D +W+ P    ERL + EL +G    +     F+K   IP+   G            
Sbjct: 158 ECRDEDWSKPLPPNERLEH-ELFSGSNTGI----NFEKYDDIPVEATGHNGPQPIDRFHD 212

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV----- 309
            ++ + I+ NI  S    PT  Q+ AI  I      K  ++   Q   GSGKT       
Sbjct: 213 LEMGEIIMGNINLSRYTRPTPVQKHAIPII----KSKRDLMACAQ--TGSGKTAAFLLPV 266

Query: 310 -----------ALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQ 349
                      AL A   + +  G+         ++++AP   LA Q Y+  +K++  + 
Sbjct: 267 LSQIYTDGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSH 326

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  
Sbjct: 327 VRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLLDMMERGKIGLDYCNYLVLDEAD 382

Query: 405 R-----FGVQQRLKLTQKATAPHVL---LMTATPIPRTLVLTS---LGDIDISKITEKPA 453
           R     F  Q R  + Q    P  L   +M +   P+ + + +   L D     +    +
Sbjct: 383 RMLDMGFEPQIRRIVEQDTMPPKGLRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGS 442

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             + I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F     +
Sbjct: 443 TSENITQKVVWVEENDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---ALEDFLYREGY 498

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             +SI   HG  S  D+E  +  F++G C +L+AT V   G+D+ +   +I
Sbjct: 499 ACTSI---HGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVI 546


>gi|160873618|ref|YP_001552934.1| primosomal protein N' [Shewanella baltica OS195]
 gi|160859140|gb|ABX47674.1| primosomal protein N' [Shewanella baltica OS195]
 gi|315265847|gb|ADT92700.1| primosomal protein N' [Shewanella baltica OS678]
          Length = 731

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 19/191 (9%)

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNT 348
           Q+     +L+G  GSGKT V L  +   ++ G QA+I+ P IG+  Q    F +++  N 
Sbjct: 216 QQGYHCTLLEGITGSGKTEVYLAVLEEILKQGKQALILVPEIGLTPQTINRFKRRFKVNV 275

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            I+   +T N     R +A  +   GQA IIIGT +     + Y  +I  I+DE+H    
Sbjct: 276 AILHSGLTDN----QRLEAWRQARCGQAAIIIGTRSALFTPMAYPGII--ILDEEHDSSF 329

Query: 409 QQRLKLTQKA-----------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +Q+  +   A           + P V+L TATP   +L     G     ++ E+    K 
Sbjct: 330 KQQEGVGYHARDLAVMRGHLESIP-VILGTATPSLESLQNALSGRYHHLQLGERAGSAKK 388

Query: 458 IKTVIIPINRI 468
           ++  II I  +
Sbjct: 389 VRQGIIDIKNM 399


>gi|319408422|emb|CBI82077.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1]
          Length = 470

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 144/342 (42%), Gaps = 49/342 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q   I  +LQ    +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 28  APTPIQSETIPHVLQ----RKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 81

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LE+     A ++I T   
Sbjct: 82  ILEPTRELAAQVQENFDKYGLNHRLNVVLLIGGVSFEDQNRKLEQ----GADVLIATPGR 137

Query: 386 FQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +  KL+L+     ++DE  R        +      P +  +   TP  R TL  +
Sbjct: 138 LLDHFERGKLLLIGTEILVIDEADR--------MLDMGFIPDIERICKLTPFTRQTLFFS 189

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY--------WICP 490
           +    +I+K+TE+         V    +    + +RL   +  G KA+         I  
Sbjct: 190 ATMAPEITKLTEQFLHSPICVEVTKASSTATTITQRL---VKSGSKAWDKRAVLRELIDN 246

Query: 491 QIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           + +E K +       + + E F SL + +  S+  +HG M    + + +  FK+    LL
Sbjct: 247 EGDELKNAIIFCNRKKDISELFRSLTK-YNFSVGALHGDMDQHSRMNTLADFKDNKLTLL 305

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
           +A+ V   G+D+ D S +   +        +H++ GR GR +
Sbjct: 306 VASDVAARGLDIPDVSHVFNYDVPTHAEDYIHRI-GRTGRAK 346


>gi|300214408|gb|ADJ78824.1| Primosomal protein n-prim [Lactobacillus salivarius CECT 5713]
          Length = 792

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 80/415 (19%), Positives = 155/415 (37%), Gaps = 97/415 (23%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q   +K +  D+      + +LQG  GSGKT V L  +  A+  G  A+++ P   L
Sbjct: 257 TQEQSKVVKKLDNDIENDKARVSLLQGVTGSGKTEVYLQVIDTALNQGKTAIVLVPEISL 316

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             Q    +K++       V ++   +    +     RI   +A +++G  +     ++  
Sbjct: 317 TPQ---MVKRFRARFGTKVAVLHSGLSIGEKYDEWRRIEREEAQVVVGARSAIFAPLK-- 371

Query: 394 KLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L ++IVDE+H          R+  +   K      +  V+  +ATP   +      G  
Sbjct: 372 NLGVIIVDEEHESSYKQDEMPRYNAKDVAKWRGIYHSCPVIFGSATPSLESRARAQKGVY 431

Query: 444 DISKITEKPAG-----------RKPIKTVIIP------INRIDEVIERL-KVVLSEGKKA 485
           D  ++T++              R+ +KT  IP      +N I E +++  ++VL   ++ 
Sbjct: 432 DWLRLTKRVNNQKLPKVQIIDMREAVKTSPIPDFSLKMVNSIQEKLDKKEQIVLLLNRRG 491

Query: 486 Y-------------------------------------------WICPQIEEKKESNFRS 502
           Y                                           + CP    KK   + +
Sbjct: 492 YSTFMMCRECGYVIKCPNCDISLTVHLDSRSLKCHYCGYETRIPYECPSCSSKKIRYYGT 551

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDK-------ESVMDSFKNGTCKLLIATTVIEVGI 555
             ++     +       I+  RM D+D        E ++ +F +G   +L+ T +I  G+
Sbjct: 552 GTQKIEKELKGLFPQARIL--RM-DVDTTRKKGAHEKLLRTFGDGKADILLGTQMIAKGL 608

Query: 556 DVVDASIIIIENAE-HFGLAQ----------LHQLRGRVGRGEEISSCILLYHPP 599
           D  + + + + NA+   G++           L Q+ GR GR ++    I+    P
Sbjct: 609 DFPNVTFVGVLNADTSLGISDFRASERTFQLLTQVSGRAGRADKDGEVIIQTFNP 663


>gi|157962445|ref|YP_001502479.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847445|gb|ABV87944.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 448

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 141/356 (39%), Gaps = 55/356 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV-------ALIAMAAAVEAGGQA 324
           +PT+ QE AI   L   + K+ M        GSGKTL         LI+  A  +   + 
Sbjct: 23  TPTEIQEQAIPVAL---AGKDLMA---SSKTGSGKTLAFLLPAMQRLISCKALSKRDPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI+ P   LA Q Y  ++    NTQ     I G      + KAL R      H ++ T  
Sbjct: 77  VILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKALSR----DPHFVVATPG 132

Query: 385 LFQDSIQYYK-----LILVIVDEQHR---FGVQQRLKLTQKATAPH----VLLMTATPIP 432
              D ++ +      L L+I+DE  R    G  ++LK+   A A H     L+ +A    
Sbjct: 133 RLADHLKQHHLHLNGLELLILDEADRMLDLGFAEQLKMI-NAAADHKRRQTLMFSA---- 187

Query: 433 RTLVLTSLGDI--DISKITEKPA------GRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            TL    + DI  ++ K  E  A        K I   I   + +D     L  +L E ++
Sbjct: 188 -TLDHGDVNDIANELLKFPEHVAIGAGNLEHKDITQRIFLCDHLDHKEAILTRILKEEQQ 246

Query: 485 AYWICPQIEEKKESNFRS--VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              I      +      +    E F +         A + G +    +  +MD F  G  
Sbjct: 247 KQIIIFTATRQDTDRLATKLAAEGFKT---------ASLSGELKQNARNQIMDEFSRGLQ 297

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ++L+ T V   G+D+++ S++I  +   F    +H++ GR GR       I L  P
Sbjct: 298 QILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDAISLVGP 352


>gi|307317997|ref|ZP_07597434.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|306896399|gb|EFN27148.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
          Length = 630

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 138/324 (42%), Gaps = 41/324 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  +        +AG   A+++AP   LA Q    +    + 
Sbjct: 41  LVSAQTGSGKTVAFGLALAPTLIGSARKFAQAGAPLALVIAPTRELALQVMRELDWLYEM 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399
               +    G M     R+ LER     AHI++GT     D I+   L        +L  
Sbjct: 101 AGATIASCVGGMDMRSERRTLER----GAHIVVGTPGRLCDHIRRGSLDISGLKAVVLDE 156

Query: 400 VDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLV-LTSLGDIDISKI----TEKPA 453
            DE    G ++ L+   +A+ A    LM +  +PR++  L      D  +I     +K  
Sbjct: 157 ADEMLDLGFREDLEFILEASPADRRTLMFSATVPRSIATLAKNYQRDAVRIGVTSEQKQH 216

Query: 454 GRKPIKTVII-PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           G    +++++ P +R + +I  L+    E + A   C         + R+ V    +   
Sbjct: 217 GDIEYRSLLVAPSDRENAIINVLR--FYEARNAIVFC---------STRAAVNHLTARFN 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   S+  + G +S  ++   + + ++G  ++ IAT V   GID+    ++I  +     
Sbjct: 266 NRGFSVVALSGELSQNERTHALQAMRDGRARVCIATDVAARGIDLPGLELVIHADLPTNS 325

Query: 573 LAQLHQLRGRVGR-GEEISSCILL 595
              LH+  GR GR G++  S +++
Sbjct: 326 DTLLHR-SGRTGRAGQKGVSALIV 348


>gi|258593159|emb|CBE69477.1| putative Primosomal protein N' (ATP-dependent helicase priA)
           (Replication factor Y) [NC10 bacterium 'Dutch sediment']
          Length = 866

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +Q +AI  +L+ +S    +  +L G  GSGKT V L  +   V  GGQA+I+ P I 
Sbjct: 298 PNSAQHTAIHGLLEGLSSGAFLPALLYGATGSGKTEVYLRVIGEVVRQGGQALILVPEIA 357

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSI 390
           +       F  ++       V ++   +    R     RI  G A I++GT  A+F    
Sbjct: 358 LTPVTADRFRSRFGNR----VALLHSALSPGERLDQWRRIKRGLADIVVGTRSAVFAP-- 411

Query: 391 QYYKLILVIVDEQHRFGVQQR 411
              +L L++VDE+H    +Q+
Sbjct: 412 -LSRLRLIVVDEEHDASYKQQ 431


>gi|225621081|ref|YP_002722339.1| primosome assembly protein PriA [Brachyspira hyodysenteriae WA1]
 gi|225215901|gb|ACN84635.1| primosome assembly protein PriA [Brachyspira hyodysenteriae WA1]
          Length = 661

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 88/191 (46%), Gaps = 17/191 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            + QE+ +K I + +   N    +L G  GSGKT V L A+   V+ G QA+++ P   L
Sbjct: 124 NEEQEAVLKKINESIDSNNPKTFLLHGVTGSGKTEVYLQAIKKVVDMGKQAIVILPEISL 183

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
             Q    IK++ +  +  + ++   +    + +  + I   +  I+IG   A+F  +   
Sbjct: 184 TPQT---IKRFAERFEGKIAVLHSKLSPNSKYRYWQMIKKDEIKIVIGARSAIFSPTPN- 239

Query: 393 YKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
             L ++++DE+H          R+  +Q     +      +LL +ATP   +    S+G 
Sbjct: 240 --LGIIVIDEEHETSYKAGDTPRYHARQVAFYRKSQENATLLLGSATPSIESFYYASIGK 297

Query: 443 IDISKITEKPA 453
           I++  + ++ A
Sbjct: 298 IELLSLKKRAA 308


>gi|317478801|ref|ZP_07937952.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
 gi|316904977|gb|EFV26780.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
          Length = 445

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 138/361 (38%), Gaps = 65/361 (18%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           IL N+        + A K+  Q  S K+    +L    GSGKTL  L+ +   ++A   G
Sbjct: 6   ILHNLKIQELTPMQEAAKEAYQ--SAKDL---VLLSPTGSGKTLAFLLPLVQTLKADIQG 60

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q     K  +  T        G  P     + ++ I      +IIG
Sbjct: 61  VQALVLVPSRELALQIETVFK--SMGTPFKAMSCYGGRPAMEEHRTMKGI---HPTVIIG 115

Query: 382 THALFQDSIQ-----YYKLILVIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPI 431
           T     D ++        ++ +++DE  +   FG    +   + Q  +    +L++AT  
Sbjct: 116 TPGRMSDHLRKENFNAATVVTLVIDEFDKCLEFGFHDEMAEVIGQLPSLKKRVLLSATDA 175

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA---YWI 488
                   +G    S ++      +P+K   +    +   +   KVV  E  K    Y +
Sbjct: 176 EEIPQFAGVGGDSPSSVS------RPMKLDFLAPEALAPRLRLHKVVSPEKDKLETLYNL 229

Query: 489 CPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              +         N+R  VER     +       + HG M   D+E  +  F+NG+C +L
Sbjct: 230 LCTLGYHSTLVFCNYRESVERVVGYLKARKFPCDMFHGGMEQPDRERALYKFRNGSCAVL 289

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           I+T +   G+D+       IEN  H                         YHPP+++ +Y
Sbjct: 290 ISTDLAARGLDIPG-----IENVVH-------------------------YHPPVNEEAY 319

Query: 606 T 606
           T
Sbjct: 320 T 320


>gi|2558533|emb|CAA73349.1| putative RNA helicase (DEAD box) [Danio rerio]
          Length = 688

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 168/411 (40%), Gaps = 82/411 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           + +D +W+ P    ERL + EL +G    +     F+K   IP+   G            
Sbjct: 158 ECRDEDWSKPLPPNERLEH-ELFSGSNTGI----NFEKYDDIPVEATGHNGPQPIDSFHD 212

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV----- 309
            ++ + I+ NI  S    PT  Q+ AI  I      K  ++   Q   GSGKT       
Sbjct: 213 LEMGEIIMGNINLSRYTRPTPVQKHAIPII----KSKRDLMACAQ--TGSGKTAAFLLPV 266

Query: 310 -----------ALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQ 349
                      AL A   + +  G+         ++++AP   LA Q Y+  +K++  + 
Sbjct: 267 LSQIYTDGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSH 326

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  
Sbjct: 327 VRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEAD 382

Query: 405 R-----FGVQQRLKLTQKATAPHVL---LMTATPIPRTLVLTS---LGDIDISKITEKPA 453
           R     F  Q R  + Q    P  L   +M +   P+ + + +   L D     +    +
Sbjct: 383 RMLDMGFEPQIRRIVEQDTMPPKGLRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGS 442

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             + I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F     +
Sbjct: 443 TSENITQKVVWVEENDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---ALEDFLYREGY 498

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             +SI   HG  S  D+E  +  F++G C +L+AT V   G+D+ +   +I
Sbjct: 499 ACTSI---HGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVI 546


>gi|311276166|ref|XP_003135075.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Sus
           scrofa]
          Length = 662

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 413

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 414 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 466

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|114153757|sp|Q9LYJ9|RH46_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 46
 gi|332004672|gb|AED92055.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana]
          Length = 645

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 89/410 (21%), Positives = 171/410 (41%), Gaps = 50/410 (12%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA------- 313
           +  ++LR + +S   S  S I+     ++ +NR + +     GSGKTL  LI        
Sbjct: 168 LPNELLREV-YSAGFSAPSPIQAQSWPIAMQNRDI-VAIAKTGSGKTLGYLIPGFMHLQR 225

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +      G   ++++P   LA Q      K+ ++++I    + G  P+  + K +ER   
Sbjct: 226 IHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIER--- 282

Query: 374 GQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-----FGVQQRLKLTQKATAPHV 423
               I++ T     D      I  +++  +++DE  R     F  Q R  + +  T    
Sbjct: 283 -GVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQT 341

Query: 424 LLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPIKT--VIIPINRIDEVIERL 475
           L+ TAT  P+ +      +L +   ++I  + E  A +   +T  V+ P+    E   RL
Sbjct: 342 LMYTAT-WPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPM----EKHSRL 396

Query: 476 KVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           + +L     G K    C        S  R   +   +L   F +  A IHG  S  +++ 
Sbjct: 397 EQILRSQEPGSKIIIFC--------STKRMCDQLARNLTRTFGA--AAIHGDKSQAERDD 446

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           V++ F++G   +L+AT V   G+DV D  +++  +  +     +H++ GR GR       
Sbjct: 447 VLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRI-GRTGRAGATGLA 505

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
              +    +K++   + +L+           ++  R  G +   ++ G P
Sbjct: 506 YTFFGDQDAKHASDLIKILEGANQKVPPQVREMATRGGGGMNKFRRWGTP 555


>gi|79513425|ref|NP_196965.2| ATP binding / ATP-dependent helicase/ helicase/ nucleic acid
           binding / protein binding [Arabidopsis thaliana]
 gi|332004671|gb|AED92054.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana]
          Length = 712

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 153/369 (41%), Gaps = 48/369 (13%)

Query: 302 VGSGKTLVALIAMAAAVE-------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI     ++        G   ++++P   LA Q      K+ ++++I    
Sbjct: 275 TGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCAC 334

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR---- 405
           + G  P+  + K +ER       I++ T     D      I  +++  +++DE  R    
Sbjct: 335 LYGGAPKGPQLKEIER----GVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDM 390

Query: 406 -FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            F  Q R  + +  T    L+ TAT  P+ +      +L +   ++I  + E  A +   
Sbjct: 391 GFEPQIRKIVNEVPTKRQTLMYTAT-WPKEVRKIAADLLVNPAQVNIGNVDELVANKSIT 449

Query: 459 KT--VIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           +T  V+ P+    E   RL+ +L     G K    C        S  R   +   +L   
Sbjct: 450 QTIEVLAPM----EKHSRLEQILRSQEPGSKIIIFC--------STKRMCDQLARNLTRT 497

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F +  A IHG  S  +++ V++ F++G   +L+AT V   G+DV D  +++  +  +   
Sbjct: 498 FGA--AAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVE 555

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
             +H++ GR GR          +    +K++   + +L+           ++  R  G +
Sbjct: 556 DYVHRI-GRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMATRGGGGM 614

Query: 634 LGIKQSGMP 642
              ++ G P
Sbjct: 615 NKFRRWGTP 623


>gi|225432126|ref|XP_002274485.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1864

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 137/310 (44%), Gaps = 44/310 (14%)

Query: 302 VGSGKTLVALIAM-------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI            V+ G   +++AP   LA Q  +   K+ +++++    
Sbjct: 544 TGSGKTLGYLIPAFILLRRRRNNVQNGPTVMVLAPTRELATQIQDETIKFGRSSRVSCAC 603

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRF--- 406
           + G   +  + K L+R     A +++ T     D ++  K+      L+++DE  R    
Sbjct: 604 LYGGTSRNAQLKELDR----GADVVVATPGRLNDILESKKIDLGQISLLVLDEADRMLDM 659

Query: 407 GVQQRLKLTQKATAP--HVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
           G + +++       P    L+ TAT  P+ +      +L +   ++I  + E  A  K I
Sbjct: 660 GFEPQIRKIVNEIPPRRQTLMYTAT-WPKEVRKIAGDLLVNPVQVNIGSVDEL-AANKAI 717

Query: 459 KTVIIPINRIDEVIERLKVVL---SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            T  + +    E   RL+ +L     G K    C   ++  +   RS+   F +      
Sbjct: 718 -TQYVEVVSPPEKQRRLEQILRSQERGSKVIIFC-STKKLCDQLARSIGRNFGA------ 769

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
              A+IHG  S ++++ V++ F++G   +L+AT V   G+D+ D  ++I  +        
Sbjct: 770 ---AVIHGDKSQVERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDY 826

Query: 576 LHQLRGRVGR 585
           +H++ GR GR
Sbjct: 827 VHRI-GRTGR 835


>gi|126512824|gb|ABO15582.1| vasa-like protein [Acyrthosiphon pisum]
          Length = 494

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 113/268 (42%), Gaps = 46/268 (17%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +IM+P   LA Q  + + K T  T I   I+ G     H+R  L   A+G  HI++ T
Sbjct: 240 QCIIMSPTRELAIQIRDVVFKLTNGTCIKQSILYGGTATGHQRGTL---ANG-IHILVAT 295

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRF-------------------GVQQRLKLTQKA 418
                D      + +  L   ++DE  R                     V  R  L   A
Sbjct: 296 PGRLNDFVGRGYVSFNSLRFFVLDEADRMLDMGFKPDIEKILNHETMVDVNTRQTLLFSA 355

Query: 419 T-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
           T A  + +++   +    V  ++G+I            K +K  I  + + ++  E +KV
Sbjct: 356 TLADDIQMLSKAYLKPNYVFVAVGEIG--------GACKDVKQEIREVTKFEKKKELIKV 407

Query: 478 VLSEGK-KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           + S G  K   +   +E+K+ ++F   +  F S  ++ T+SI   HG     ++E  +  
Sbjct: 408 LESLGDCKGTMVF--VEQKRNADF---IAAFLSEKDYPTTSI---HGDREQPEREQALRD 459

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIII 564
           FKN   K+L+AT V   G+D+   + +I
Sbjct: 460 FKNNRMKILVATAVAARGLDIKGVNCVI 487


>gi|54295690|ref|YP_128105.1| primosomal protein N' (replication factor Y) [Legionella
           pneumophila str. Lens]
 gi|53755522|emb|CAH17021.1| Primosomal protein N' (replication factor Y) [Legionella
           pneumophila str. Lens]
          Length = 725

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 110/242 (45%), Gaps = 27/242 (11%)

Query: 235 AGQIALLLMRK--QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
             QIA LL  +     +++ +P  +  K++       P +    Q  A+  I + +    
Sbjct: 162 GAQIAALLACQAINLSQQVTLPTKIPEKLSP------PLTLNPEQAVAVASIFEHIHHYQ 215

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQII 351
             L  LQG  GSGKT V L  +A  +E G Q +++ P IG+  Q     + ++T      
Sbjct: 216 CFL--LQGVTGSGKTEVYLHVIAKILEQGKQVLVLVPEIGLTPQ----LLSRFTARFNHP 269

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           + ++  N+ ++ R+ A +     +  ++IGT +     +    L L+I+DE+H   ++Q 
Sbjct: 270 ITVLHSNLNESERQIAWQLAKENKVKMVIGTRSAVFTPLP--NLGLIIIDEEHDSSLKQM 327

Query: 412 --LKLTQKATA---PH-----VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
             ++ + + TA    H     ++L TATP   T+        ++ ++T K A   P+   
Sbjct: 328 EGVRYSARDTALMRAHLANIPIILGTATPSLETIHNCKQKKYNLLRLTHKAASTTPLHYQ 387

Query: 462 II 463
           +I
Sbjct: 388 LI 389


>gi|331003297|ref|ZP_08326801.1| hypothetical protein HMPREF0491_01663 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412646|gb|EGG92030.1| hypothetical protein HMPREF0491_01663 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 539

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 171/396 (43%), Gaps = 62/396 (15%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP- 329
           FS  +      ++++  + + N  L ++    G GK+L   I   A +      +I++P 
Sbjct: 13  FSEKEGFRDVQEEVIDSLLEGNSTLCLMP--TGGGKSL---IYQVAGICTKKTTIIISPL 67

Query: 330 IGILAQQHYEFIKK-----------YTQNTQIIVEIITGNMPQAHRRKALERIA-HGQAH 377
           + ++ QQ  E ++K           Y Q  +II ++ +G MPQ +   + ERI+  G   
Sbjct: 68  VALMNQQSQEMMEKGISTISFSGMDYKQQFKIITDMASGKMPQ-YMFTSPERISCDGYLE 126

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQH---RFGVQQR----------LKLTQKATAPHVL 424
            ++        S Q   + L+++DE H   ++G   R           ++   +  P VL
Sbjct: 127 YVL--------SKQKNNIGLIVIDEAHCISQWGDGFRPAYKNIPLFLDRIFGDSNWPVVL 178

Query: 425 LMTATPIPRTLVLTSLGDIDISK-ITEKPAGRKPIKTVIIPI-----NRIDEVIERLKVV 478
            +TAT +        + D  I+K I  +   RK ++  I  +     +  DE +E++ + 
Sbjct: 179 CLTAT-LNGQQQQQIIEDFHITKTIKGENLWRKNLQLEIFNLKSGKEDTKDEQLEKI-IE 236

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
             +G+K      ++  K  +  R++ +++  ++E     +A    +  D  K  V+ SF+
Sbjct: 237 KHKGEKILVFAHRVYGKHPTT-RTLYDKYKDVYE----GVAYFDSKADDKYKVQVLKSFQ 291

Query: 539 NGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           NG  K++ AT+   +G+D+ D  ++    I E  E     Q +Q  GR GR  E +   L
Sbjct: 292 NGDIKIVFATSAFGMGVDIPDVRVVVNYLISETVE-----QYYQEVGRGGRDGEQAYGYL 346

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           LY     +     L+    TE   +   ED + R E
Sbjct: 347 LYTNQSKRGRRMLLNQSLCTEKSLIDLYEDRRPRGE 382


>gi|198475917|ref|XP_001357204.2| GA21521 [Drosophila pseudoobscura pseudoobscura]
 gi|198137464|gb|EAL34273.2| GA21521 [Drosophila pseudoobscura pseudoobscura]
          Length = 404

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 122/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q    +    +  ++   
Sbjct: 72  IAQAQSGTGKTATFSIAILQQIDTAVRECQALILAPTRELATQIQRVVMALGEYMKVHSH 131

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-------QYYKL-ILVIVDEQHR 405
              G      R  A  RI     H+++GT     D I       Q+ KL +L   DE   
Sbjct: 132 ACIGGTNV--REDA--RILESGCHVVVGTPGRVYDMINRKVLRTQHIKLFVLDEADEMLS 187

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + +++   K   P   V+L++AT  P  L ++            +   R+P+    I
Sbjct: 188 RGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVS------------RCFMREPVS---I 232

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      K+  W    + +  ++          N R  V++       
Sbjct: 233 LVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSS 292

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   D+E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 293 HNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 343


>gi|168186565|ref|ZP_02621200.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
 gi|169295454|gb|EDS77587.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
          Length = 371

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 168/369 (45%), Gaps = 51/369 (13%)

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K +GI  N+   ++++ ++    SPT  QE++I+ I     +K + + I +   G+GKTL
Sbjct: 5   KNLGISKNIIDVLSREGIK----SPTPIQENSIEFI-----RKGKDV-IAEAQTGTGKTL 54

Query: 309 VALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
             L+ +   +       Q +I+ P   LA Q  E   K  +   I +    G      + 
Sbjct: 55  AFLLPIFENISLESNFVQVLIVTPTRELAIQITEEAMKLKKAKDINILAAYGGKDIQSQL 114

Query: 366 KALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           K L+    G   +II T     D     +I+  KL  +++DE       Q L +  K   
Sbjct: 115 KKLK----GNIQLIIATPGRLLDHLNRSTIKLDKLKTLVLDE-----ADQMLYMGFKNEV 165

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKVVL 479
             ++  T+    +TL  ++  + ++ K+  +    K  K V +    I  + I++  V  
Sbjct: 166 EKIINYTSKKY-QTLCFSATMNSEVKKLAYRYM--KDPKVVSVKTEEITLKNIKQFVVET 222

Query: 480 SEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS---SIAIIHGRMSDIDKE 531
           ++ +K   +C  ++E  ++ F +++      R ++L E       + + +HG ++   +E
Sbjct: 223 TDRRKQDSLCKVLDE--DNPFMAIIFCRTKRRVDNLEEALHKRGYNCSKLHGDLAQSKRE 280

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGR-G 586
            VM  FKN   + LIAT V   G+D+   + +    I ENAE +    +H++ GR GR G
Sbjct: 281 RVMKKFKNMDTQYLIATDVAARGLDITGVTHVYSYDIPENAESY----IHRI-GRTGRAG 335

Query: 587 EEISSCILL 595
           EE  +C+ +
Sbjct: 336 EEGKTCLFI 344


>gi|150396691|ref|YP_001327158.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150028206|gb|ABR60323.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae
           WSM419]
          Length = 499

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 150/353 (42%), Gaps = 50/353 (14%)

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++QK+L  +  +    PT  Q  AI   LQ    +  +L I Q   G+GKT   ++ M  
Sbjct: 9   LSQKVLSAVTDAGYTIPTPIQIGAIPPALQ----RRDILGIAQ--TGTGKTASFVLPMLT 62

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q  E   KY +N ++ + ++ G +    + + LER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLER 122

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKA 418
                A ++I T     D  +  KL++     +++DE  R         +++  KL    
Sbjct: 123 ----GADVLICTPGRLLDHCERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLI--P 176

Query: 419 TAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKTVIIPINRID----EVI 472
                L  +AT  P    L    L + +  ++  + +    +   ++  +  D     V+
Sbjct: 177 FTRQTLFFSATMPPEIQKLADRFLQNPERVEVARRSSTAITVTQRLVAAHGKDYEKRAVL 236

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
             L     + K A   C     KK+     V E F SL  H   S+  +HG M    + +
Sbjct: 237 RELIRSQEDLKNAIIFC---NRKKD-----VAELFRSLDRH-GFSVGALHGDMDQRSRMA 287

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++ +FK+G  KLL+A+ V   G+D+ D S +   +        +H++ GR GR
Sbjct: 288 MLANFKDGNIKLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGR 339


>gi|323452072|gb|EGB07947.1| hypothetical protein AURANDRAFT_26912 [Aureococcus anophagefferens]
          Length = 421

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 133/339 (39%), Gaps = 61/339 (17%)

Query: 301 DVGSGKTLV----ALIAMAAAVEAGGQ----AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL     AL     A+   G+     +++AP   LA Q +E ++++        
Sbjct: 40  ETGSGKTLGFGMPALSKFKQALAGRGKRQPAMLVLAPTRELANQSFEVLQEFCGKVGATA 99

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF- 406
            +  G +P+  +++ + + A      ++ T     D     S+   K+    +DE  R  
Sbjct: 100 AVAYGGVPKHEQKREIAKCA-----ALVATPGRLNDFIQEGSVDLSKVSFFCLDEADRML 154

Query: 407 --GVQQRLKLTQKATA-PHVL--LMTAT-PIPRTLVLTSLGDIDISKIT--------EKP 452
             G  Q +K    A A P  L  + +AT P     + +     D  ++         E P
Sbjct: 155 DMGFVQEVKKIAAACANPEKLTAMFSATWPTEVQNIASEFLKPDFVRVNVGAERGADEGP 214

Query: 453 AGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQI----EEKKESNFRSVVE 505
              K I   +I     +R   ++E LK     G  A +   ++      KKE        
Sbjct: 215 EANKRIDQSVIVTEERSRDGRLLEILKQRYQSGTSASYATARLIVFGLYKKE------CA 268

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII- 564
           R  +           IHG MS   +    + FK+G   LL+AT V   G+D+ +  +++ 
Sbjct: 269 RLETFLNSKKWKCVAIHGDMSQAARNQAFEDFKSGAVPLLVATDVAARGLDIPNVELVVN 328

Query: 565 ------IENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                 IE+        +H++ GR GR  +  + I L+H
Sbjct: 329 FSFPLTIED-------YVHRI-GRTGRAGKTGTAITLFH 359


>gi|16272291|ref|NP_438503.1| primosome assembly protein PriA [Haemophilus influenzae Rd KW20]
 gi|260581195|ref|ZP_05849014.1| primosomal protein N [Haemophilus influenzae RdAW]
 gi|1172617|sp|P44647|PRIA_HAEIN RecName: Full=Primosomal protein N'; AltName: Full=ATP-dependent
           helicase priA; AltName: Full=Replication factor Y
 gi|1573308|gb|AAC22001.1| primosomal protein N' (priA) [Haemophilus influenzae Rd KW20]
 gi|260092120|gb|EEW76064.1| primosomal protein N [Haemophilus influenzae RdAW]
          Length = 730

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 81/389 (20%), Positives = 157/389 (40%), Gaps = 94/389 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +++G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 222 LLDGVTGSGKTEIYLQYIEEILKSGKQVLVLVPEIGLTPQT----VQRFKVRFNVEIDVL 277

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
             N+    R    +R   GQ+ I+IGT  ALF    Q+  L  +I+DE+H    +Q+   
Sbjct: 278 HSNLTDTQRLYVWDRARSGQSAIVIGTRSALF---TQFSNLGAIILDEEHDSSYKQQDSW 334

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                   + L QK     VL+ +ATP   ++     G      ++++      ++  +I
Sbjct: 335 RYHARDLAIVLAQKLNIS-VLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVI 393

Query: 464 PINRID-------EVIERLKVVLSEGKKAY------------------WI--CPQIEEKK 496
            +   +        ++ER+K  L +G +                    WI  CP  E+  
Sbjct: 394 DLKNQNIQNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPY 453

Query: 497 ESNFRSVVERFN----------------SLH--------EHFTSSIAII--HGRMSDIDK 530
             +    V R +                S H        E    ++  +  H  ++ ID+
Sbjct: 454 TYHQHQNVLRCHHCGAQKTIPRQCGDCGSTHLVTTGLGTEQLEETLKTLFPHYSVARIDR 513

Query: 531 ESV---------MDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHF 571
           +S          ++  + G  ++LI T ++           V +  VD+++  ++     
Sbjct: 514 DSTSRKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNVDSALFSLDFRAEE 573

Query: 572 GLAQLH-QLRGRVGRGEEISSCILLYHPP 599
            LAQL+ Q+ GR GR ++    +L  H P
Sbjct: 574 RLAQLYIQVAGRAGRADKQGEVVLQTHYP 602


>gi|89096443|ref|ZP_01169336.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89089297|gb|EAR68405.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 543

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 156/351 (44%), Gaps = 57/351 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           PT  QE AI  +L+      R + I Q   G+GKTL  ++ +   ++      QA+I+ P
Sbjct: 45  PTAVQEKAIPIVLE-----GRDI-IAQAQTGTGKTLAFILPILEKIDPSNGSTQALIVTP 98

Query: 330 IGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q    +KK  ++   + V  + G      +   L+R    Q  I++ T     D
Sbjct: 99  TRELALQITSEVKKLIEDMPDLNVLAVYGGQDVEKQLHKLQR----QTQIVVATPGRLLD 154

Query: 389 -----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTS 439
                ++Q  ++  +++DE  +    G    ++L          +++ TP  R T++ ++
Sbjct: 155 HLRRGTVQLDEVSFLVLDEADQMLHIGFLNEMEL----------IISQTPASRQTMLFSA 204

Query: 440 LGDIDISKITEKPAGRKP----IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               DI K+++K   ++P    I+   +P    ++ IE+L +  ++  K   +  +I E 
Sbjct: 205 TMPDDIRKLSKKHL-KEPESIRIEKTFVP----EKAIEQLAIFTTDRAKQNALISRIRED 259

Query: 496 K---ESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +      F   + R   L++   S   S   +HG ++   +E VM  F+N   + LIAT 
Sbjct: 260 RPFLAIIFCRTIRRATKLYDALKSQRFSCEELHGDLTQAKREKVMKKFRNAEIQFLIATD 319

Query: 550 VIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           V   G+DV   + +    I +++E +    +H++ GR GR  +    +  Y
Sbjct: 320 VAARGLDVEGVTHVYNYDIPQDSESY----VHRI-GRTGRAGKDGLAVTFY 365


>gi|327392908|dbj|BAK10330.1| ATP-independent RNA helicase DbpA [Pantoea ananatis AJ13355]
          Length = 439

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 145/317 (45%), Gaps = 42/317 (13%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIK---KYTQNTQIIV 352
           Q   GSGKT    I +   +++     QA+I+ P   LA Q    ++   ++T+N +I+ 
Sbjct: 26  QAKTGSGKTAAFGIGLLQHIDSAHFQTQALILCPTRELADQVSNVLRQLARFTRNIKILT 85

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G  P + +R +L    H   HI++GT     D I+   L L     +++DE  R  
Sbjct: 86  --LCGGQPMSAQRDSL---VHA-PHIVVGTPGRILDHIKRETLKLESLRTLVLDEADRML 139

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             G +  ++           ++ ATP  R TL+ ++     I+ ++++   R+ +  V  
Sbjct: 140 EMGFRDDMET----------IIAATPASRQTLLFSATWPEGIAALSQRFQ-REALSVVTE 188

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-------RSVVERFNSLHEHFTS 516
            ++ +   IE+  +  S G+K   +   + E++ S+        R   +   +L+    S
Sbjct: 189 EVSEL-PAIEQQFIEASHGEKLSLLISLLSERQPSSCVVFCNTKRECDDIAAALNARDIS 247

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++ + HG +   D+E V+  F NG+ ++L+AT V   G+D+   S+++           L
Sbjct: 248 ALPL-HGDLEQRDRERVLIRFANGSGRVLVATDVAARGLDIKLLSLVVNYQLAWDPEVHL 306

Query: 577 HQLRGRVGRGEEISSCI 593
           H++ GR  R  E  + +
Sbjct: 307 HRI-GRTARAGEQGAAV 322


>gi|224042619|ref|XP_002190578.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
           [Taeniopygia guttata]
          Length = 675

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK----------- 260
           K+ + +W+ P    ERL   EL +G    +     F+K   IP+   G            
Sbjct: 146 KSDEDDWSKPLPPSERLE-QELFSGSNTGI----NFEKYDDIPVEATGSNCPPHIESFSD 200

Query: 261 --IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             + + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 201 VDMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 254

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + A G                      ++++AP   LA Q YE  +K+   +++   
Sbjct: 255 LSQIYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPC 314

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 315 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 370

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 371 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 429

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 430 NITQKVVWVEEPDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---ALEDF-LYHEGY-- 482

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 483 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 530


>gi|110737546|dbj|BAF00715.1| DRH1 DEAD box protein - like [Arabidopsis thaliana]
          Length = 450

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 154/369 (41%), Gaps = 48/369 (13%)

Query: 302 VGSGKTLVALIAMAAAVE-------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI     ++        G   ++++P   LA Q      K+ ++++I    
Sbjct: 12  TGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCAC 71

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---- 405
           + G  P+  + K +ER       I++ T     D ++  ++ L     +++DE  R    
Sbjct: 72  LYGGAPKGPQLKEIER----GVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDM 127

Query: 406 -FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            F  Q R  + +  T    L+ TAT  P+ +      +L +   ++I  + E  A +   
Sbjct: 128 GFEPQIRKIVNEVPTKRQTLMYTAT-WPKEVRKIAADLLVNPAQVNIGNVDELVANKSIT 186

Query: 459 KT--VIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           +T  V+ P+    E   RL+ +L     G K    C        S  R   +   +L   
Sbjct: 187 QTIEVLAPM----EKHSRLEQILRSQEPGSKIIIFC--------STKRMCDQLARNLTRT 234

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F +  A IHG  S  +++ V++ F++G   +L+AT V   G+DV D  +++  +  +   
Sbjct: 235 FGA--AAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVE 292

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
             +H++ GR GR          +    +K++   + +L+           ++  R  G +
Sbjct: 293 DYVHRI-GRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMATRGGGGM 351

Query: 634 LGIKQSGMP 642
              ++ G P
Sbjct: 352 NKFRRWGTP 360


>gi|254577027|ref|XP_002494500.1| ZYRO0A02948p [Zygosaccharomyces rouxii]
 gi|238937389|emb|CAR25567.1| ZYRO0A02948p [Zygosaccharomyces rouxii]
          Length = 557

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 184/418 (44%), Gaps = 84/418 (20%)

Query: 247 FKKEIGIPI---NVEG-----------KIAQKILRNIPF-SPTKSQESAIKDILQDMSQK 291
           FK++ GI I   +VE            ++A  I++N+ +  PT  Q +A+ ++       
Sbjct: 137 FKEDFGITIRGGSVENPLRSWYELKNEQMADAIVKNLKYHEPTPIQRAAVPNVC------ 190

Query: 292 NRMLRILQG--DVGSGKTLVALIAMAAAVEA------------GGQAVIMAPIGILAQQ- 336
           N+  R L G    GSGKTL  LI +   ++             G  A+I+AP   LAQQ 
Sbjct: 191 NKKFRDLLGIASTGSGKTLAFLIPILMKIDQLPSRPLVLKKMDGPLALILAPTRELAQQI 250

Query: 337 ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
                E I  + +N ++   I+ G     H  + +         I++ T     D ++ +
Sbjct: 251 EKEAEELIDAWGKNCEV-ASIVGG-----HSIEEISLQVSQGTDILVATPGRLIDCLENH 304

Query: 394 KLIL-----VIVDEQHRF---GVQQRL-----KLTQKATAPHVLLMTATPIPRTLVLTSL 440
            L L     +++DE  R    G ++++      LTQK      ++ TA+  P T  + + 
Sbjct: 305 VLTLGKVETLVLDEADRMIDMGFEEQVTSILGNLTQKR---QTMMFTASMTPGTEKIAAG 361

Query: 441 GDIDISKIT-EKPAGRKP-IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
              +  ++T     G  P I+ ++  I   ++  +R+   L + +    I   I  K+ +
Sbjct: 362 YLKNPVRVTVSGSQGSTPMIRQLVEHIGSEEQRFQRIVEFLPQYRAPIIIF--INYKRAA 419

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           ++  +V++F   ++     + +++G  S   +E  +   + G  +++IAT V   G+DV 
Sbjct: 420 DW--LVQKF---YKETQYKVTVLYGSKSQEQREQSLQLLRKGKVQIMIATNVAARGLDVP 474

Query: 559 DASIIIIENAEHFGLAQ-----LHQLRGRVGR-GEEISSCILL--YHPPLSKNSYTRL 608
           D S++I     +F L++     +H++ GR GR G E ++   L    P L K  Y  L
Sbjct: 475 DVSLVI-----NFQLSKTFEDYVHRI-GRTGRAGHEGTAITFLDDEDPELVKELYKYL 526


>gi|170747273|ref|YP_001753533.1| primosome assembly protein PriA [Methylobacterium radiotolerans JCM
           2831]
 gi|170653795|gb|ACB22850.1| primosomal protein N' [Methylobacterium radiotolerans JCM 2831]
          Length = 729

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 44/219 (20%)

Query: 222 SPARERL---AYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNI-----PFS 272
           +PAR ++   A D  L G+ AL        KE G+ ++V +G I   +L  +     P +
Sbjct: 124 TPARTKVLAAAADGALRGKSAL-------AKEAGVSLSVVDGLIDDGVLETVAVEPEPVA 176

Query: 273 P-----------TKSQESAIKDIL------QDMSQKNRMLR--ILQGDVGSGKTLVALIA 313
           P           + +Q  A+  ++      +   Q+   LR  +L+G  GSGKT V   A
Sbjct: 177 PRPDPDFPRAPLSPAQAEAVSALVAPFPWDRPQPQEADDLRPVLLEGVTGSGKTEVYFEA 236

Query: 314 MAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           +AA + AG QA+I+ P I + AQ    F  ++          I G      R +    +A
Sbjct: 237 VAACIRAGRQALILMPEIALTAQFLDRFAARFGVRPAAWHSGIGGR----RRERLRAAVA 292

Query: 373 HGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            G+A +++G   ALF   + + +L L++VDE+H    +Q
Sbjct: 293 EGEALVVVGARSALF---LPFARLGLIVVDEEHETAYKQ 328


>gi|289724644|gb|ADD18300.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 652

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 135/326 (41%), Gaps = 51/326 (15%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+I+AP   LAQQ  +   ++    Q+   
Sbjct: 164 TGSGKTLAYVLPAVVHINNQPRLEHSDGPIALILAPTRELAQQIQQVANEFGSQIQVRNT 223

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF-- 406
            I G  P+  + + LER       I+I T     D ++       +   +++DE  R   
Sbjct: 224 CIFGGAPKQPQSRDLER----GVEIVIATPGRLIDFLERGVTNLRRCTYLVLDEADRMLD 279

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKP 457
            G + +++   K   P   VL+ +AT  P+ +       L +   I+I  +T   A    
Sbjct: 280 MGFEPQIRKIIKQIRPDRQVLMWSAT-WPKEVRNLAEEFLDNYIQINIGSLTLS-ANHNI 337

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           ++  I+ +    E   +L  +L E          I  +K++     VE    + E  T S
Sbjct: 338 LQ--IVDVCEEAEKTNKLNKLLGE----------ISSEKDTKTIIFVETKKRVDE-ITRS 384

Query: 518 IA-------IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           I+        IHG  S  +++ V+ SF+NG   +L+AT V   G+DV D   +I  +   
Sbjct: 385 ISRQGWRACAIHGDKSQQERDYVLTSFRNGRSSILVATDVAARGLDVDDVKFVINYDYPS 444

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY 596
                +H++ GR GR     +   L+
Sbjct: 445 NSEDYVHRI-GRTGRSNNTGTAYTLF 469


>gi|254441744|ref|ZP_05055237.1| primosomal protein N', putative [Octadecabacter antarcticus 307]
 gi|198251822|gb|EDY76137.1| primosomal protein N', putative [Octadecabacter antarcticus 307]
          Length = 730

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 105/257 (40%), Gaps = 43/257 (16%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLR-----------ILQGDVGSGKTLVALIAMA 315
           R++P+ P    +   K +  D +   ++L            +L+G  GSGKT V L A+A
Sbjct: 180 RDVPY-PRLDPDHGGKQLTSDQAVGAKILSEAVRSGTYGTTLLKGVTGSGKTEVYLEAVA 238

Query: 316 AAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             + AG QA+++ P I + A    EF+ +               +    RR+    +  G
Sbjct: 239 ECLRAGRQALVLLPEIALTA----EFLTRVEARFGCKPAEWHSGVTMTERRRCWRMVGQG 294

Query: 375 QAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------TAPHV 423
            A +I+G   ALF   + Y  L L++VDE+H    +Q   +   A           A  V
Sbjct: 295 DAQLIVGARSALF---LPYRNLGLIVVDEEHDTSYKQEDGVLYNARDMTVLRASLNAAQV 351

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           +L +ATP      L S  +++  K        +    V+  ++ ID  IE L        
Sbjct: 352 VLASATP-----SLESWANVEAGKYARVTLASRYGAAVLPKMSAIDMRIEDL-------P 399

Query: 484 KAYWICPQIEEKKESNF 500
              W+ P +++  E+  
Sbjct: 400 GGRWVSPTLQKMVENRL 416


>gi|197337698|ref|YP_002157744.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197314950|gb|ACH64399.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 496

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHII 379
           +A+++ P   LA Q +E ++KY++N  +  +++ G +   PQ      ++R+  G   ++
Sbjct: 75  RALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQ------MQRLRRG-VDVL 127

Query: 380 IGTHALF-----QDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPI 431
           + T         Q++I++ +L ++++DE  R    G    +K           ++   P 
Sbjct: 128 VATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKK----------ILAKLPK 177

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  +   K   + P++  +   N   E +E+   V+ +G+K   +   
Sbjct: 178 NRQNLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKL 237

Query: 492 IEEKKESNFRSVV---------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           I   K+++++ V+          R     E    S A IHG  S   +   + +FK+G  
Sbjct: 238 I---KDNDWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQV 294

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           ++L+AT +   G+D+     +I  +        +H++ GR GR       I
Sbjct: 295 RVLVATDIAARGLDIEQLPQVINVDLPKVPEDYVHRI-GRTGRAGATGKAI 344


>gi|74006742|ref|XP_861537.1| PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide
           3 isoform 11 [Canis familiaris]
          Length = 646

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 114 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 168

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 169 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 222

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 223 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 282

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 283 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 338

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 339 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 397

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 398 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 450

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 451 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 498


>gi|62087546|dbj|BAD92220.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 variant [Homo
           sapiens]
          Length = 674

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 142 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 196

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 197 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 250

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 251 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 310

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 311 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 366

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 367 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 425

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 426 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 478

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 479 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 526


>gi|327279490|ref|XP_003224489.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Anolis
           carolinensis]
          Length = 600

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 136 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYGRACRLKST 195

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 196 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLD 251

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  V  ++G +++S      A
Sbjct: 252 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELS------A 305

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + D++I  ++ ++SE           +E K   F     R + L 
Sbjct: 306 NHNILQIVDVCHDVEKDDKLIRLMEEIMSE-----------KENKTIVFVETKRRCDDLT 354

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 355 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 414

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 415 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 457


>gi|270012072|gb|EFA08520.1| hypothetical protein TcasGA2_TC006173 [Tribolium castaneum]
          Length = 702

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 151/368 (41%), Gaps = 45/368 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N + K+ + I++    SPT  Q  A+   LQ       +L I Q   GSGKT   L  +
Sbjct: 236 FNFDDKLLKAIIKAEYTSPTPIQAQAVPCALQGRD----VLGIAQ--TGSGKTAAFLWPL 289

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              V          G  A+I+AP   LA Q Y   KK+ +   + V    G   +  +  
Sbjct: 290 LKHVSTQPPVTAGEGPAALILAPTRELAIQIYNEAKKFARVYDLTVVCAYGGGSKWEQSL 349

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR---FGVQQRLKLTQKA 418
           AL+      A I++ T     D ++       ++  +++DE  R    G + +++     
Sbjct: 350 ALKE----GADIVVATPGRIIDHVKGGATNLQRVTFLVLDEADRMFELGFEPQVRSVCNH 405

Query: 419 TAP--HVLLMTATPIPR--TLVLTSLGD-IDISKITEKPAGRKPIKTVIIPIN---RIDE 470
             P    LL +AT   R   L   +L D + IS+     A     + V++  N   + D 
Sbjct: 406 VRPDRQTLLFSATFRKRIEKLAKDALNDPVRISQGITGQANEDVTQRVLLMENQQLKRDW 465

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           ++  L  +LS G    ++  +++ ++ +N   V E F  L         ++HG +   ++
Sbjct: 466 LVNNLVELLSAGSVLVFVTKKVDAEQLANDLKVKE-FECL---------LLHGDIEQAER 515

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             V+ +FK   C LL+AT V   G+D+     ++  +         H++ GR GR     
Sbjct: 516 NKVITAFKKKECSLLVATDVAARGLDIPHIRTVVNYDIARDIDTHTHRI-GRTGRAGNQG 574

Query: 591 SCILLYHP 598
           +   L  P
Sbjct: 575 TAYTLITP 582


>gi|326913476|ref|XP_003203064.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like [Meleagris
           gallopavo]
          Length = 695

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 170/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK----------- 260
           K+ + +W+ P    ERL   EL +G    +     F+K   IP+   G            
Sbjct: 166 KSDEDDWSKPLPPSERLE-QELFSGSNTGI----NFEKYDDIPVEATGSNCPPHIESFSD 220

Query: 261 --IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             + + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 221 VDMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 274

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + A G                      ++++AP   LA Q YE  +K+   +++   
Sbjct: 275 LSQIYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPC 334

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 335 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 390

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 391 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 449

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  +D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 450 NITQKVVWVEELDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---ALEDF-LYHEGY-- 502

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 503 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 550


>gi|260466808|ref|ZP_05812993.1| primosomal protein N' [Mesorhizobium opportunistum WSM2075]
 gi|259029420|gb|EEW30711.1| primosomal protein N' [Mesorhizobium opportunistum WSM2075]
          Length = 727

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 28/199 (14%)

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRN--IPFSPTKSQES- 279
           ARER+    L   +  L   R       G+   V EG  AQ +     IP  P  +    
Sbjct: 132 ARERV----LEVAEGGLAWTRSGLAHAAGVSSTVIEGLKAQGVFETVMIPPRPVVAAPDS 187

Query: 280 --AIKDILQDMSQKNRMLR-----------ILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             A+ +++ D +    MLR           +L G  GSGKT V   A+AAA++ G Q +I
Sbjct: 188 LYAVPELMPDQNDAASMLRANVAAGTFNVALLDGVTGSGKTEVYFEAVAAALDQGKQVLI 247

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-AL 385
           + P   L    + F++++ Q           ++P   R K   ++A G   ++ G   AL
Sbjct: 248 LLPEIALT---HAFLERFQQRFGAKPGEWHSDLPPRMREKVWRQVAEGTVRVVAGARSAL 304

Query: 386 FQDSIQYYKLILVIVDEQH 404
           F   + + +L L++VDE+H
Sbjct: 305 F---LPFKELGLIVVDEEH 320


>gi|156845404|ref|XP_001645593.1| hypothetical protein Kpol_1033p40 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380615|sp|A7TJ36|DBP3_VANPO RecName: Full=ATP-dependent RNA helicase DBP3
 gi|156116258|gb|EDO17735.1| hypothetical protein Kpol_1033p40 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 530

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 138/325 (42%), Gaps = 41/325 (12%)

Query: 300 GDVGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            + GSGKT    +     +         + G Q +I++P   LA Q Y+ +   T    +
Sbjct: 159 AETGSGKTFAFGVPAINNILTKSGSKPGKNGIQVLIISPTRELASQIYDNLVILTDKVGL 218

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
               + G +P+  +R  L+R     + +++ T     D IQ     L     +++DE  R
Sbjct: 219 ECCCVYGGVPKDEQRTQLKR-----SQVVVATPGRLLDLIQEGAANLSNVNYLVLDEADR 273

Query: 406 F---GVQQRLK---LTQKATAPHVLLMTATPIP---RTLVLTSLGD---IDISKITEKPA 453
               G ++ +K      K+T    L+ TAT  P   R L  T +     + I    E  A
Sbjct: 274 MLEKGFEEDIKNIIRETKSTGRQTLMFTAT-WPKEVRELASTFMNSPIKVSIGNTDELSA 332

Query: 454 GRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            ++   I  VI P  +  +++E LK   S  KK   +      KKE+   + VER  + +
Sbjct: 333 NKRITQIVEVIDPFKKERKLLELLKKYQSGSKKDDKVLIFALYKKEA---ARVERNLNYN 389

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            +    ++ IHG +S   + + +D FK G   +L+AT V   G+D+ +   +I       
Sbjct: 390 GY---KVSAIHGDLSQQQRTNALDEFKTGRSSILLATDVAARGLDIPNVKTVINLTFPLT 446

Query: 572 GLAQLHQLRGRVGRGEEISSCILLY 596
               +H++ GR GR  +  +   L+
Sbjct: 447 VEDYVHRI-GRTGRAGKTGTAHTLF 470


>gi|281347447|gb|EFB23031.1| hypothetical protein PANDA_001323 [Ailuropoda melanoleuca]
          Length = 613

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 81  KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 135

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 136 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 189

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 190 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 249

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 250 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 305

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 306 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 364

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 365 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 417

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 418 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVSARGLDISNVKHVI 465


>gi|258624294|ref|ZP_05719243.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM603]
 gi|258583445|gb|EEW08245.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM603]
          Length = 434

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 132/312 (42%), Gaps = 27/312 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     Q +++ P   LA Q  E +        +    + G
Sbjct: 66  ANTGSGKTLAYGLPLLERLKTSPEQQTLVLVPTRELAMQVSEVLTHVGTPLGLNTLCLCG 125

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +A ++ AL        +I++ T      L Q  +   ++  +++DE  R        
Sbjct: 126 GVDKAEQQNALAE----NPNILVATTGRLFDLTQSGLSLNRVTTLVLDEADR-------- 173

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +     P +    P N I++ +
Sbjct: 174 LLDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMHAPTQVSANPENSINQAV 233

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSSIAI---IHGRMS 526
           +    ++++G K   +   +++ + S    F    E  +SL +    +  +   +HG  S
Sbjct: 234 QETLYLVNKGSKTQALVALLKQHQWSQVLVFIGAKENADSLTKKLNKAGVVATALHGDKS 293

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR- 585
              +E+ +  FKNGT ++LIAT ++  GI +    ++I         A +H++ GR  R 
Sbjct: 294 QAQRETALAEFKNGTTQVLIATDLLARGIHIEQLPVVINFELPMHAEAYVHRV-GRTARA 352

Query: 586 GEEISSCILLYH 597
           G++  +  L+ H
Sbjct: 353 GQQGIALSLVCH 364


>gi|283797830|ref|ZP_06346983.1| primosomal replication factor Y [Clostridium sp. M62/1]
 gi|291074518|gb|EFE11882.1| primosomal replication factor Y [Clostridium sp. M62/1]
          Length = 820

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 19/169 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V +  ++  +  G QA+++ P I +  Q    F +++       + II
Sbjct: 255 LLYGITGSGKTEVYMEMLSRVLAMGRQAIVLIPEIALTYQTVMRFYRRFGSR----ISII 310

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
              + Q  R    ER   G+  I+IG   ALF     +  L L+I+DE+H          
Sbjct: 311 NSRLSQGERYDQWERAMKGEVDIMIGPRSALF---TPFSNLGLIIIDEEHEGAYKSETMP 367

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           R+  ++   L  +     V+L +ATP   +      G+  + ++T + A
Sbjct: 368 RYHAREVAGLRARLCGADVVLGSATPSVESFTRALQGEYGLLRLTRRAA 416


>gi|295091957|emb|CBK78064.1| replication restart DNA helicase PriA [Clostridium cf.
           saccharolyticum K10]
          Length = 820

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 19/169 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V +  ++  +  G QA+++ P I +  Q    F +++       + II
Sbjct: 255 LLYGITGSGKTEVYMEMLSRVLAMGRQAIVLIPEIALTYQTVMRFYRRFGSR----ISII 310

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
              + Q  R    ER   G+  I+IG   ALF     +  L L+I+DE+H          
Sbjct: 311 NSRLSQGERYDQWERAMKGEVDIMIGPRSALF---TPFSNLGLIIIDEEHEGAYKSETMP 367

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           R+  ++   L  +     V+L +ATP   +      G+  + ++T + A
Sbjct: 368 RYHAREVAGLRARLCGADVVLGSATPSVESFTRALQGEYGLLRLTRRAA 416


>gi|171687132|ref|XP_001908507.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943527|emb|CAP69180.1| unnamed protein product [Podospora anserina S mat+]
          Length = 489

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 148/343 (43%), Gaps = 49/343 (14%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +I+AP   LA Q  + I K+ ++++I  
Sbjct: 106 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRN 165

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P+  + + L+R       + I T     D ++  K  L     +++DE  R  
Sbjct: 166 TCVYGGVPKGPQIRDLQR----GVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRML 221

Query: 407 --GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
             G + +++            L   AT P  +   A+      +  ++G +D+S   +IT
Sbjct: 222 DMGFEPQIRKIIGQIRPDRQTLMWSATWPKDVRNLASDFLTDFIQVTIGSMDLSANHRIT 281

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +       I  V+    + D++I+ L+ ++ E K A   C      K       + RF  
Sbjct: 282 Q-------IVEVVSESEKRDKMIKELEKIM-EDKTAENKCLIFTGTKR--VADEITRF-- 329

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +    +++I HG     +++ V+D FK G   +++AT V   GIDV + + +I  +  
Sbjct: 330 LRQDGWPALSI-HGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVINYDYP 388

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     +H++ GR GR     + I  +    +K +   + VL+
Sbjct: 389 NNSEDYIHRI-GRTGRAGAKGTAITYFTTDNAKQARDLVGVLR 430


>gi|7573310|emb|CAB87628.1| DRH1 DEAD box protein-like [Arabidopsis thaliana]
          Length = 713

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 153/369 (41%), Gaps = 48/369 (13%)

Query: 302 VGSGKTLVALIAMAAAVE-------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI     ++        G   ++++P   LA Q      K+ ++++I    
Sbjct: 275 TGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCAC 334

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR---- 405
           + G  P+  + K +ER       I++ T     D      I  +++  +++DE  R    
Sbjct: 335 LYGGAPKGPQLKEIER----GVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDM 390

Query: 406 -FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            F  Q R  + +  T    L+ TAT  P+ +      +L +   ++I  + E  A +   
Sbjct: 391 GFEPQIRKIVNEVPTKRQTLMYTAT-WPKEVRKIAADLLVNPAQVNIGNVDELVANKSIT 449

Query: 459 KT--VIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           +T  V+ P+    E   RL+ +L     G K    C        S  R   +   +L   
Sbjct: 450 QTIEVLAPM----EKHSRLEQILRSQEPGSKIIIFC--------STKRMCDQLARNLTRT 497

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F +  A IHG  S  +++ V++ F++G   +L+AT V   G+DV D  +++  +  +   
Sbjct: 498 FGA--AAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVE 555

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
             +H++ GR GR          +    +K++   + +L+           ++  R  G +
Sbjct: 556 DYVHRI-GRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMATRGGGGM 614

Query: 634 LGIKQSGMP 642
              ++ G P
Sbjct: 615 NKFRRWGTP 623


>gi|328859369|gb|EGG08478.1| hypothetical protein MELLADRAFT_47739 [Melampsora larici-populina
           98AG31]
          Length = 404

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 126/291 (43%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++  +++      QA+++AP   LAQQ  + +        I   
Sbjct: 72  IAQAQSGTGKTATFSISILQSIDVNIKACQALVLAPTRELAQQIQKVLVALGDYLNIECY 131

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
              G       R+ + ++  G  H+I+GT     D IQ   L     D    F + +  +
Sbjct: 132 AAVGG---TSVREGMAKLQEG-VHVIVGTPGRVYDMIQRRALK---TDHIKIFTLDEADE 184

Query: 414 LTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           +  +     +  +     P  + ++L++    D+ ++T K   R+PI+ ++         
Sbjct: 185 MLSRGFKDQIYDVFQLLPPTTQVVLLSATMPQDVLEVTSKFM-REPIRILV--------- 234

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------RFNSLHEHFTS 516
            +R ++ L EG K ++I  + EE K      + E               + + L E  T 
Sbjct: 235 -KRDELTL-EGIKQFYIAVEKEEWKLDTLCDLYETVTITQAVIFCNTRRKVDWLQEKLTG 292

Query: 517 ---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M    +E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 293 REFTVSSMHGDMEQGQREVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVI 343


>gi|311276168|ref|XP_003135076.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Sus
           scrofa]
          Length = 646

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 114 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 168

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 169 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 222

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 223 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 282

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 283 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 338

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 339 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 397

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 398 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 450

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 451 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 498


>gi|306825593|ref|ZP_07458932.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304431954|gb|EFM34931.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 447

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 150/345 (43%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +PT+ QE  I  +L       R L + +   GSGKT   L+ +   ++      QAVI A
Sbjct: 23  TPTEVQEKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDETSDSVQAVITA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           P   LA Q Y+  ++   ++ + V ++   G   +A   + +E++A  Q HI+IGT    
Sbjct: 77  PSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKA---RQIEKLASNQPHIVIGTPGRI 133

Query: 387 QDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTATPIPRTLV 436
            D ++      +K  + +VDE         L+   K           ++ +AT IP+ L 
Sbjct: 134 YDLVKSGDLAIHKAKIFVVDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSAT-IPQKLQ 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   + K    P   K IKT  +  + ID  +   K    +  + Y +   ++   
Sbjct: 193 PF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-RDKNAQIYELTQLMQPYL 244

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +   R + L+ + T+    +A IHG ++  +++ +M+  KN   + ++AT +   
Sbjct: 245 AMIFVNTKTRADELYAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIVATDLAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 305 GIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLSGTAITLYQP 348


>gi|90577494|ref|ZP_01233305.1| putative ATP-dependent RNA helicase RhlE [Vibrio angustum S14]
 gi|90440580|gb|EAS65760.1| putative ATP-dependent RNA helicase RhlE [Vibrio angustum S14]
          Length = 497

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 126/299 (42%), Gaps = 53/299 (17%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHII 379
           +A+++ P   LA Q  E +  Y +N ++   ++ G +   PQ      + R+  G A ++
Sbjct: 75  RALVLTPTRELAAQVGESVATYGKNLRLSSAVVFGGVKVNPQ------MLRMRKG-ADVL 127

Query: 380 IGTHALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T         Q+++++  + ++++DE  R      ++  +K       ++   P  R 
Sbjct: 128 VATPGRLMDLHSQNAVKFRDVEILVLDEADRMLDMGFIRDIRK-------ILALLPKERQ 180

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            +L S    D  +   K     P++  + P N+    +++            WICP  ++
Sbjct: 181 NLLFSATFSDEIRELAKGLVNNPVEIDVNPRNQTARTVKQ------------WICPVDQK 228

Query: 495 KK---------ESNFRSVV------ERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDS 536
           KK         E N++ V+         N L  H  S   S A IHG  S   +   + +
Sbjct: 229 KKPNLLTKLLNERNWKQVLVFTKTKHGANKLATHLESRGVSAAAIHGNKSQGARTKALAN 288

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           FK+G  ++L+AT +   G+D+     ++  +  H     +H++ GR GR   +   I L
Sbjct: 289 FKSGDVRVLVATDIAARGLDIDQLPQVVNFDLPHVAEDYVHRI-GRTGRAGCVGEAISL 346


>gi|90961590|ref|YP_535506.1| primosomal protein n-prim [Lactobacillus salivarius UCC118]
 gi|90820784|gb|ABD99423.1| Primosomal protein n-prim [Lactobacillus salivarius UCC118]
          Length = 792

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 80/415 (19%), Positives = 155/415 (37%), Gaps = 97/415 (23%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q   +K +  D+      + +LQG  GSGKT V L  +  A+  G  A+++ P   L
Sbjct: 257 TQEQSKVVKKLDDDIENDKARVSLLQGVTGSGKTEVYLQVIDTALNQGKAAIVLVPEISL 316

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             Q    +K++       V ++   +    +     RI   +A +++G  +     ++  
Sbjct: 317 TPQ---MVKRFRARFGTKVAVLHSGLSIGEKYDEWRRIEREEAQVVVGARSAIFAPLK-- 371

Query: 394 KLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L ++IVDE+H          R+  +   K      +  V+  +ATP   +      G  
Sbjct: 372 NLGVIIVDEEHESSYKQDEMPRYNAKDVAKWRGIYHSCPVIFGSATPSLESRARAQKGVY 431

Query: 444 DISKITEKPAG-----------RKPIKTVIIP------INRIDEVIERL-KVVLSEGKKA 485
           D  ++T++              R+ +KT  IP      +N I E +++  ++VL   ++ 
Sbjct: 432 DWLRLTKRVNNQKLPKVQIIDMREAVKTSPIPDFSLKMVNSIQEKLDKKEQIVLLLNRRG 491

Query: 486 Y-------------------------------------------WICPQIEEKKESNFRS 502
           Y                                           + CP    KK   + +
Sbjct: 492 YSTFMMCRECGYVIKCPNCDISLTVHLDSRSLKCHYCGYETRIPYECPSCSSKKIRYYGT 551

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDK-------ESVMDSFKNGTCKLLIATTVIEVGI 555
             ++     +       I+  RM D+D        E ++ +F +G   +L+ T +I  G+
Sbjct: 552 GTQKIEKELKGLFPQARIL--RM-DVDTTRKKGAHEKLLRTFGDGKADILLGTQMIAKGL 608

Query: 556 DVVDASIIIIENAE-HFGLAQ----------LHQLRGRVGRGEEISSCILLYHPP 599
           D  + + + + NA+   G++           L Q+ GR GR ++    I+    P
Sbjct: 609 DFPNVTFVGVLNADTSLGISDFRASERTFQLLTQVSGRAGRADKDGEVIIQTFNP 663


>gi|15965498|ref|NP_385851.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
 gi|307302618|ref|ZP_07582374.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
 gi|307318465|ref|ZP_07597899.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|15074679|emb|CAC46324.1| Putative ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
 gi|306895805|gb|EFN26557.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|306902982|gb|EFN33573.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 499

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 147/351 (41%), Gaps = 46/351 (13%)

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++QK+L  +  +    PT  Q  AI   LQ    +  +L I Q   G+GKT   ++ M  
Sbjct: 9   LSQKVLSAVTDAGYTIPTPIQVGAIPPALQ----RRDILGIAQ--TGTGKTASFVLPMLT 62

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q  E   KY +N ++ + ++ G +    + + LER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLER 122

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKA 418
                A ++I T     D  +  KL++     +++DE  R         +++  KL    
Sbjct: 123 ----GADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFT 178

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIER 474
                   T  P  + L    L + +  ++  + +    +    +  +  D     V+  
Sbjct: 179 RQTLFFSATMPPEIQKLADRFLQNPERLEVARRSSTAITVTQRFVAAHGKDYEKRAVLRE 238

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L     + K A   C     KK+     V E F SL  H   S+  +HG M    + +++
Sbjct: 239 LIRSQEDLKNAIIFC---NRKKD-----VAELFRSLDRH-GFSVGALHGDMDQRSRMAML 289

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            +FK+G  KLL+A+ V   G+D+ D S +   +        +H++ GR GR
Sbjct: 290 ANFKDGNIKLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGR 339


>gi|229587022|ref|YP_002845523.1| ATP-dependent RNA helicase RhlE [Rickettsia africae ESF-5]
 gi|228022072|gb|ACP53780.1| ATP-dependent RNA helicase RhlE [Rickettsia africae ESF-5]
          Length = 410

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 139/313 (44%), Gaps = 33/313 (10%)

Query: 302 VGSGKTLVALIAMAAA-VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGKTL  L+ +  + ++    A+I+ P   LA Q +  + K T + +I   ++ G  P
Sbjct: 45  TGSGKTLAYLLPLIDSFIKNKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEP 104

Query: 361 QAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRL 412
              +   L++       +IIGT       L + S++  ++ + ++DE  R    G++++L
Sbjct: 105 MPKQFMQLKK----NPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQL 160

Query: 413 KLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +   K       VL+ +AT +P+ ++  S   ++            P++  +   N+   
Sbjct: 161 EEINKFLPDKRQVLMFSAT-MPKHIIAVSQKYLN-----------NPVRITVGATNKAAA 208

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRM 525
            I++  + +S+ +K   +  Q+  ++ S       +   ++   + ++   +   IHG +
Sbjct: 209 EIKQESMHVSDKEKFSALTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDL 268

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S   +E V+ SF+    ++++AT V   G+D+     +I  +        LH++ GR GR
Sbjct: 269 SQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRI-GRTGR 327

Query: 586 GEEISSCILLYHP 598
                  +    P
Sbjct: 328 AGATGHALSFISP 340


>gi|45360981|ref|NP_989127.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [Xenopus (Silurana)
           tropicalis]
 gi|38511935|gb|AAH61342.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19 [Xenopus (Silurana)
           tropicalis]
 gi|89272120|emb|CAJ82182.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19 [Xenopus (Silurana)
           tropicalis]
          Length = 487

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 132/326 (40%), Gaps = 69/326 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+K QE+A+  +L + SQ      I Q   G+GKT   ++AM + V+      Q + ++P
Sbjct: 124 PSKIQENALPMMLAEPSQN----LIAQSQSGTGKTAAFVLAMLSRVDPANKYPQCLCLSP 179

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I++  Q + I        +  A R K LER      HI+IGT     D 
Sbjct: 180 TYELALQTGKVIEQMGQFSNI-------KLAYAVRGKKLERGQKIPEHIVIGTPGTVLDW 232

Query: 390 IQYYKLI------LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               + I      + ++DE         +  TQ      + +    P    ++L      
Sbjct: 233 CSKLRFIDPKKIKVFVLDEAD------VMIATQGHQDQSIRIQKMLPRDCQMLL------ 280

Query: 444 DISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             S   E+   R   K V    II + R +E ++ +       K+ Y  C      +E  
Sbjct: 281 -FSATFEESVWRFAQKVVPEPNIIKLKREEETLDTI-------KQYYVEC----HSREDK 328

Query: 500 FRSVVERFNSL---------HEHFTSS------------IAIIHGRMSDIDKESVMDSFK 538
           FR++   + S+         H   T+S            +A++ G M    + +V+D F+
Sbjct: 329 FRALCNIYGSITIAQAMIFCHTRKTASWLAGELYKEGHQVALLSGEMMVEQRAAVIDRFR 388

Query: 539 NGTCKLLIATTVIEVGIDVVDASIII 564
            G  K+L+ T V   GIDV   S++I
Sbjct: 389 EGKEKVLVTTNVCARGIDVEQVSVVI 414


>gi|296126017|ref|YP_003633269.1| primosomal protein N' [Brachyspira murdochii DSM 12563]
 gi|296017833|gb|ADG71070.1| primosomal protein N' [Brachyspira murdochii DSM 12563]
          Length = 661

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 17/188 (9%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           QE  IK I + +  +     +L G  GSGKT V L A+   V+ G QA+++ P   L  Q
Sbjct: 127 QEEVIKKINESLESEKPKTFLLHGVTGSGKTEVYLQAIKKVVDMGKQAIVILPEISLTPQ 186

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKL 395
               IK++ +  +  + ++   +    + +  + I   +  I+IG   A+F  +     L
Sbjct: 187 T---IKRFAERFEGKIAVLHSKLSPNSKYRYWQMIKKDEIKIVIGARSAIFSPTPN---L 240

Query: 396 ILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            ++++DE+H          R+  +Q     +      +LL +ATP   +    S+G I++
Sbjct: 241 GIIVIDEEHETSYKAGDTPRYHARQVAFYRKNHENALLLLGSATPSIESFYYASIGKIEL 300

Query: 446 SKITEKPA 453
            K+ ++ A
Sbjct: 301 LKLNKRAA 308


>gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114]
 gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114]
          Length = 500

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHII 379
           +A+++ P   LA Q +E ++KY++N  +  +++ G +   PQ      ++R+  G   ++
Sbjct: 75  RALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQ------MQRLRRG-VDVL 127

Query: 380 IGTHALF-----QDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPI 431
           + T         Q++I++ +L ++++DE  R    G    +K           ++   P 
Sbjct: 128 VATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKK----------ILAKLPK 177

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  +   K   + P++  +   N   E +E+   V+ +G+K   +   
Sbjct: 178 NRQNLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKL 237

Query: 492 IEEKKESNFRSVV---------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           I   K+++++ V+          R     E    S A IHG  S   +   + +FK+G  
Sbjct: 238 I---KDNDWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQV 294

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           ++L+AT +   G+D+     +I  +        +H++ GR GR       I
Sbjct: 295 RVLVATDIAARGLDIEQLPQVINVDLPKVPEDYVHRI-GRTGRAGATGKAI 344


>gi|301171475|ref|NP_001180346.1| ATP-dependent RNA helicase DDX3X isoform 3 [Homo sapiens]
 gi|296235291|ref|XP_002762846.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 2 [Callithrix
           jacchus]
 gi|297709770|ref|XP_002831597.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Pongo
           abelii]
 gi|194388152|dbj|BAG65460.1| unnamed protein product [Homo sapiens]
          Length = 646

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 114 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 168

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 169 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 222

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 223 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 282

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 283 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 338

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 339 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 397

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 398 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 450

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 451 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 498


>gi|291407356|ref|XP_002719895.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
           [Oryctolagus cuniculus]
          Length = 661

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 413

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 414 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 466

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|282158103|ref|NP_001164095.1| ATP-dependent RNA helicase p62 [Tribolium castaneum]
          Length = 549

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 135/343 (39%), Gaps = 51/343 (14%)

Query: 302 VGSGKTLVALIAM--------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++          + A   G  A+++AP   LAQQ  +    +  ++ +   
Sbjct: 159 TGSGKTLAYILPAIVHINNQPSIARGDGPIALVLAPTRELAQQIQQVAHDFGSSSYVRNT 218

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF-- 406
            I G  P+  + + LER       I I T       L + +    +   +++DE  R   
Sbjct: 219 CIFGGAPKGPQARDLER----GVEICIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 274

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    R  V  ++G + +S      A
Sbjct: 275 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVRKLAQDFLRNYVQINIGSLQLS------A 328

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSE----GKKAYWICPQIEEKKESNFRSVVERFNS 509
               ++  I+ + +  E   +L  +L E    G+    I   +E KK+      VE    
Sbjct: 329 NHNILQ--IVDVCQEHEKETKLNNLLQEIGNNGEPGAKIIIFVETKKK------VESITR 380

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
               +      +HG  S  +++ V+  F+NG   +LIAT V   G+DV     +I  +  
Sbjct: 381 TIRRYGWPAVCMHGDKSQQERDFVLREFRNGKSSILIATDVAARGLDVEGIKYVINYDYP 440

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     +H++ GR GR +   +    + P   + +   +SVLK
Sbjct: 441 NSSEDYIHRI-GRTGRSDTTGTSYAFFTPSNFRQAKDLVSVLK 482


>gi|239942861|ref|ZP_04694798.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           15998]
          Length = 457

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 129/318 (40%), Gaps = 33/318 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  +   A+++ P   LAQQ  + +  Y ++ ++ +
Sbjct: 126 RGRTGSGKTLAFGLALLARTAGRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRL 185

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFG 407
             + G M    +  AL     G A +++ T    +D I+       ++ + ++DE     
Sbjct: 186 ATVVGGMSIGRQASALR----GGAEVVVATPGRLKDLIERRDCKLDRVTVTVLDEAD--- 238

Query: 408 VQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                ++      P V  LL    P  + ++ ++  D ++  +      + P+   + P 
Sbjct: 239 -----QMADMGFMPQVTELLDQVNPDGQRMLFSATLDRNVDLLVRTYL-KDPVVHSVDPA 292

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAI 520
                 +E   V+  +G   Y    +I  +        + +  V++      H     A 
Sbjct: 293 AGAVTTMEH-HVLYVQGADKYATTTEIAARDGRVIMFLDTKHAVDKLTDHLLHSGVRAAA 351

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG  S   +   +D FK G   +L+AT V   GI V +  +++  +        LH+  
Sbjct: 352 LHGGKSQPQRTRTLDRFKTGQVTVLVATNVAARGIHVDNLDLVVNVDPPTDHKDYLHR-G 410

Query: 581 GRVGRGEEISSCILLYHP 598
           GR  R  E  S + L  P
Sbjct: 411 GRTARAGESGSVVTLVLP 428


>gi|227524619|ref|ZP_03954668.1| primosomal replication protein n [Lactobacillus hilgardii ATCC
           8290]
 gi|227088294|gb|EEI23606.1| primosomal replication protein n [Lactobacillus hilgardii ATCC
           8290]
          Length = 798

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 5/148 (3%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q + R+ P    + Q++A+  I   + ++     +L+G  GSGKT V L AMA A+  G 
Sbjct: 253 QPVSRSYPLDLNEDQQTAVNRINNAIGKQTDTTFLLEGVTGSGKTEVYLQAMAHALSIGK 312

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   L  Q    I+    +    V ++   M    R    +RI  GQA +++G 
Sbjct: 313 TALMLVPEITLTPQIVGRIRSRFGDQ---VAMLHSAMSSGERYDEWQRINSGQAKVVVGV 369

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            +     ++   + L+I+DE+H    +Q
Sbjct: 370 RSAIFAPLK--NIGLIIMDEEHDSSYKQ 395


>gi|161528690|ref|YP_001582516.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160339991|gb|ABX13078.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus
           SCM1]
          Length = 440

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 132/303 (43%), Gaps = 32/303 (10%)

Query: 299 QGDVGSGKTLVALIAMAAAVEA--GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           Q   GSGKT    ++M   ++   G Q +IMAP   LA Q  + IKK+ + T I V  + 
Sbjct: 45  QAHTGSGKTAAFSLSMLQEIQPKNGIQGLIMAPTRELAMQITDEIKKFGKYTGIKVATVY 104

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQR 411
           G      +  ALER       I++ T     D     SI+   +  +++DE         
Sbjct: 105 GGQGMGLQLDALER----GVEIVVATPGRLIDHLKRGSIELRDVTHIVLDEADTM----- 155

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLG-DIDISKITEKPAGRKPIKTVIIPINRIDE 470
             L          ++   P  R + L S     +I +++E+     P + ++   +   E
Sbjct: 156 --LDMGFIDDIGFILDLAPEDRVMSLFSATMPTEILRLSEEYL-NNPKQFLLDADDLSGE 212

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKK-------ESNFRSV-VERFNSLHEHFTSSIAIIH 522
            I++  +V+ +  K  ++   I+  K        + +R+  V +F  LH+    ++AI  
Sbjct: 213 GIDQSYLVIKDRDKFKYLIDFIKPTKGQAIVFCSTKYRTRDVAKF--LHQEKFDAVAI-E 269

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G MS   +E  M  F++G   +L+AT V   GIDV    ++I  +  +  +A  H++ GR
Sbjct: 270 GDMSQHRREQSMGKFRSGKADILVATDVASRGIDVPRVELVINYDVPNQEMAYFHRI-GR 328

Query: 583 VGR 585
             R
Sbjct: 329 TAR 331


>gi|84995424|ref|XP_952434.1| RNA helicase [Theileria annulata strain Ankara]
 gi|65302595|emb|CAI74702.1| RNA helicase, putative [Theileria annulata]
          Length = 628

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 159/398 (39%), Gaps = 58/398 (14%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGG 322
           + PT  Q   I  ILQ  +       I+  + GSGKT+  LI +   V           G
Sbjct: 159 YEPTPVQSQVIPCILQGRNT------IILSETGSGKTISYLIPIVVKVLDLIKQWKSVSG 212

Query: 323 Q----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           +    A+I+     L  Q Y  +KK  +   + + +IT  + +      + R  H    I
Sbjct: 213 KKNVYALILTLTRELCNQVYGLVKKLCKGINLRITLITTGVDKTE----MFRSVHNGCEI 268

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL-VL 437
            I T     D I    + L    E   F + +  K+  K     V+ +       TL VL
Sbjct: 269 AICTPQRLVDMISSKGINL---SETKFFVLDEADKMFTKEYESKVISILNLLRDDTLMVL 325

Query: 438 TSLGDID--ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE---GKKAYWI---C 489
            S    D    KI         +K  +  +  ++ +  +     S     +K  W+    
Sbjct: 326 VSASTTDEIYKKIKSLVRNTITVKVGLSDVINLENIQLKFLTAFSHNFLAQKNTWLEDNL 385

Query: 490 PQIEEKKE----SNFRSVVERFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           P +E + +     N R VVE+  S L+  + SS  + +G M   ++ S + SFK G+ + 
Sbjct: 386 PSLESQSQVIIFCNSREVVEQLYSFLYSGYKSSCKL-YGDMLPTERHSTISSFKKGSYRT 444

Query: 545 LIATTVIEVGIDVVDASIII-IENAEHFGLAQLHQLRGRVGRG--------------EEI 589
           LIAT ++  G+D+    ++I  +   HF    LH++ GR  RG               ++
Sbjct: 445 LIATDLVCRGLDIPAVGVVINYDTPRHFHTF-LHRV-GRCARGNSKGTSYTFFTKNDNKM 502

Query: 590 SSCILLYHPPLSKNSYTRLSVLKN-TEDGFLIAEEDLK 626
           ++ IL Y    SK    +++  KN T D ++   E LK
Sbjct: 503 AAYILNYLETESKKCKIKINATKNPTSDDYITIPEHLK 540


>gi|86357880|ref|YP_469772.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42]
 gi|86281982|gb|ABC91045.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42]
          Length = 527

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 152/363 (41%), Gaps = 50/363 (13%)

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++QK+L  +  +    PT  Q  AI   L+    +  +  I Q   G+GKT   ++ M +
Sbjct: 31  LSQKVLSAVTDAGYTIPTPIQAGAIPFALE----RRDICGIAQ--TGTGKTASFVLPMLS 84

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q  E  +KY +N ++ V ++ G +    + + LER
Sbjct: 85  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER 144

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKA 418
                A ++I T     D  +  KL++     +++DE  R         +++  KL    
Sbjct: 145 ----GADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFT 200

Query: 419 TAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKTVIIPINRID----EVI 472
                L  +AT  P    L    L + +  ++    +  K +    +  +  D     V+
Sbjct: 201 R--QTLFFSATMPPEIQKLADRFLQNPERIEVARPASAAKTVTQRFVASHSKDYEKRAVL 258

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
             L    +E K A   C     KK+     V + F SL  H   ++  +HG M    +  
Sbjct: 259 RELVRAQTELKNAIIFC---NRKKD-----VADLFRSLERH-GFNVGALHGDMDQRSRTM 309

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           ++ +F++G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR     + 
Sbjct: 310 MLQNFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRI-GRTGRAGRSGAA 368

Query: 593 ILL 595
             L
Sbjct: 369 FTL 371


>gi|288574292|ref|ZP_06392649.1| DEAD/DEAH box helicase domain protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570033|gb|EFC91590.1| DEAD/DEAH box helicase domain protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 574

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 142/324 (43%), Gaps = 42/324 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQ---HYEFIKKYTQNTQI 350
           ++Q   GSGKTL  L+ +   +    A  + ++++P   LAQQ     E+I KY     I
Sbjct: 49  VVQARTGSGKTLGFLLPLLNELPRETATPRILVLSPTRELAQQIAGEAEWIGKYMG---I 105

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL----ILVIVDEQHRF 406
               + G M    + K L R   G A +++GT     D I+   L    I  IV ++   
Sbjct: 106 TTASLVGGMDMERQIKDLRR---GSA-LVVGTPGRTMDHIRRRTLKTDTIQTIVLDEGDT 161

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            +    +   +A      ++   P P RT + ++    +++ +T++        T+    
Sbjct: 162 MLDMGFRDDIEA------ILNTLPDPHRTWLFSATMPDEVASLTKRYLDSPSWITLCHDE 215

Query: 466 NRIDEVIERLKVVLSEGKKA-------YWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           ++ +++  R  +V S GK+         W  P++           VE    L E   ++ 
Sbjct: 216 DQHEDITHRAYLVPS-GKRLEGLVNVLLWENPEMGLIFCHTKAGTVETMERLQEEGFAAS 274

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHFGLA 574
           A+ HG MS +++ SVM++F+ G    L+AT V   G+DV   S +I     +N E F   
Sbjct: 275 AL-HGDMSQLERNSVMNAFRQGRIPYLVATNVAARGLDVQGVSHVIQIGLPDNLETF--- 330

Query: 575 QLHQLRGRVGRGEEISSCILLYHP 598
            +H+  GR GR  +    IL+  P
Sbjct: 331 -VHR-SGRTGRAGQEGRNILVLTP 352


>gi|91762637|ref|ZP_01264602.1| probable primosomal protein N [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718439|gb|EAS85089.1| probable primosomal protein N [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 651

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 11/165 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +K Q++++K  +  ++QK R+  +LQG  GSGKT+V   A+   +  G Q +I+ P IG+
Sbjct: 124 SKEQKNSLKK-MNVLNQKFRV-HVLQGTTGSGKTMVYFEALKEIINKGFQGLILLPEIGL 181

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q   +FI+ +     +    IT    + ++      IA+ +  ++IG   +LF   + 
Sbjct: 182 TGQFQNKFIEFFGFKPAVWHSGIT----KKNKEIIWSGIANDKIKVVIGARSSLF---LP 234

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           + KL L+IVDE+H    +Q   +T  A    +   +   IP  L+
Sbjct: 235 FKKLGLIIVDEEHDQSYKQDEGVTYNARDMAISRASFENIPINLI 279


>gi|332982568|ref|YP_004464009.1| RecQ family ATP-dependent DNA helicase [Mahella australiensis 50-1
           BON]
 gi|332700246|gb|AEE97187.1| ATP-dependent DNA helicase, RecQ family [Mahella australiensis 50-1
           BON]
          Length = 491

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 155/390 (39%), Gaps = 58/390 (14%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           QE+ I+ +L      N  L ++    GSGK+L   +    A+   G A++++P+  L + 
Sbjct: 25  QEAVIRSVLSG----NDTLAVMP--TGSGKSLCYQLP---ALILPGTAIVVSPLIALMKD 75

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ-----DSIQ 391
             +F++    +  I    I   +  A +++ + R+  G+  +I      F+     D ++
Sbjct: 76  QVDFLR----HNGIPAAFINSTLTIAQQQECMRRLQKGRYKLIYVAPERFRSQSFLDGLK 131

Query: 392 YYKLILVIVDEQH---RFGVQQR---LKLTQK---ATAPHVLLMTATPIPRTLVLTSLGD 442
              + L  VDE H   ++G   R   L+L Q       P V+  TAT        TS   
Sbjct: 132 EVHISLFAVDEAHCISQWGHDFRPDYLRLAQAIEYTGRPPVIATTATA-------TSYVR 184

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----E 497
            DI +  +    R  +     P  R       +K V SE ++  +I   I + +      
Sbjct: 185 DDIIQQLKLVRPRCFVTGFERPNLRFI-----VKAVSSESQREAFILDTIGQLRFPGIIY 239

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  R   E   +         A  H  +SD  +  V D F  G   +++AT    +G+D 
Sbjct: 240 TATRKATEMLATRLNRAGIIAAPYHAGLSDQQRIRVQDDFMQGRLPVILATNAFGMGVDK 299

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-------LSKNSYTRLSV 610
            D   ++  N     L   +Q  GR GR  + + CILLY P        +  N+Y  L  
Sbjct: 300 PDVGFVLHYNMPA-SLEAYYQEAGRAGRDGQPACCILLYKPSDKHLQEFMINNNYPNLKA 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           ++   +    +  D+        LGIK++ 
Sbjct: 359 VRAVYNSLCRSGSDVV------TLGIKETA 382


>gi|217971705|ref|YP_002356456.1| primosomal protein N' [Shewanella baltica OS223]
 gi|217496840|gb|ACK45033.1| primosomal protein N' [Shewanella baltica OS223]
          Length = 731

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 19/191 (9%)

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNT 348
           Q+     +L+G  GSGKT V L  +   ++ G QA+I+ P IG+  Q    F +++  N 
Sbjct: 216 QQGYHCTLLEGITGSGKTEVYLAVLEEILKQGKQALILVPEIGLTPQTINRFKRRFKVNV 275

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            ++   +T N     R +A  +   GQA IIIGT +     + Y  +I  I+DE+H    
Sbjct: 276 AVLHSGLTDN----QRLEAWRQARCGQAAIIIGTRSALFTPMAYPGII--ILDEEHDSSF 329

Query: 409 QQRLKLTQKA-----------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +Q+  +   A           + P V+L TATP   +L     G     ++ E+    K 
Sbjct: 330 KQQEGVGYHARDLAVMRGHLESIP-VILGTATPSLESLQNALSGRYHHLQLGERAGAAKK 388

Query: 458 IKTVIIPINRI 468
           ++  II I  +
Sbjct: 389 VRQGIIDIKNM 399


>gi|304316977|ref|YP_003852122.1| primosomal protein N' [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778479|gb|ADL69038.1| primosomal protein N' [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 735

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 9/140 (6%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           PTK QE  I ++   + +      +L G  GSGKT V L  +   +E G +++++ P I 
Sbjct: 197 PTKEQEFVINEVKHSIGRNVFEKYLLFGVTGSGKTEVYLQLIEKCIEEGKESIVLVPEIS 256

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-HALFQDSI 390
           +  Q    FI ++      +V ++   +    R     RI +G+  +++G  +A+F    
Sbjct: 257 LTPQTIERFISRFGN----LVAVLHSGLSDGERFDEWRRIKNGEVKVVVGVRNAIFA--- 309

Query: 391 QYYKLILVIVDEQHRFGVQQ 410
            +  + L+I+DE+H    +Q
Sbjct: 310 PFSNIGLIIIDEEHENTYKQ 329


>gi|227541917|ref|ZP_03971966.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182360|gb|EEI63332.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 455

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 142/347 (40%), Gaps = 50/347 (14%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   L  Q  E + +   N  + V  I G  P   + KAL+        +++GT
Sbjct: 84  RALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTPYEEQEKALKD----GTDLVVGT 139

Query: 383 HALFQDSIQYYKL------ILVI--VDEQHRFGVQQRL-KLTQKATAPHVLLMTATPIPR 433
                D     +L      ILV+   DE    G    + K+    TA H  ++ +  +P 
Sbjct: 140 PGRLIDLYNRGELRLDTVRILVLDEADEMLDLGFLPAIEKIIAGITAEHQTMLFSATMPD 199

Query: 434 TLVLTSLGDIDI-----SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            ++  + G ++      ++++ +       K V+   +R+D+V    +V+ + G+    I
Sbjct: 200 AILGLARGFMNKPVHIRAEMSGEAETNATTKQVVFKSHRMDKVAVISRVLQARGRGRTII 259

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +       RS  E    L       +A +HG MS   +E  +  F++G   +L+AT
Sbjct: 260 FVRTK-------RSAAEVARDL-AGAGFQVASVHGDMSQSARERSLQGFRDGVVDILVAT 311

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+ D + +I        L  +H++ GR GR     + + L         Y  L
Sbjct: 312 DVAARGIDIDDVTHVINYQTPDDELTYVHRI-GRTGRAGHTGTAVTLV-------GYDEL 363

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
              K      LI +E          LG+ +  +P++    PEL++ L
Sbjct: 364 PKWK------LINDE----------LGLGKDELPEWFSTSPELYEEL 394


>gi|226951869|ref|ZP_03822333.1| ATP-dependent primosomal protein N' [Acinetobacter sp. ATCC 27244]
 gi|294649126|ref|ZP_06726568.1| DNA replication factor Y [Acinetobacter haemolyticus ATCC 19194]
 gi|226837409|gb|EEH69792.1| ATP-dependent primosomal protein N' [Acinetobacter sp. ATCC 27244]
 gi|292825009|gb|EFF83770.1| DNA replication factor Y [Acinetobacter haemolyticus ATCC 19194]
          Length = 755

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +  + Q+ AI+ IL++  Q +    +L G  GSGKT V L  M   ++ G Q +
Sbjct: 215 LAQVPLTANEDQKRAIQQILKE--QHHYQAFLLDGLTGSGKTEVYLQVMHEVLKQGKQVL 272

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q     + ++       + ++   +  + R +A +    G+A I+IGT +
Sbjct: 273 VLVPEIGLTPQT----VARFKSRFHCDIALLHSGLNDSKRLQAWQHAQTGKASIVIGTRS 328

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                + +  L L+I+DE+H    +Q+
Sbjct: 329 AIYTPLPH--LGLIILDEEHDLSYKQQ 353


>gi|166711813|ref|ZP_02243020.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 458

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 126/297 (42%), Gaps = 54/297 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + ++K      N ++
Sbjct: 43  IAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQVGKQLRKLATGIPNMKL 102

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +V  +TG MP   +  +LE  AH   H+++GT    Q+  +   L L     +++DE  R
Sbjct: 103 VV--LTGGMPLGPQLASLE--AH-DPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADR 157

Query: 406 F---GVQQ------------RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
               G ++            R  L   AT PH++   A  I +          D  +IT 
Sbjct: 158 MLDMGFEEPIREIASRCDKHRQSLLFSATFPHIIRALAREILK----------DPIEITV 207

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI---CPQIEEKKESNFRSVVERF 507
           + A   P          ID+    +     +   A  +    P+      +  + V E  
Sbjct: 208 EGADNAP---------EIDQQFFEVDPTYRQKAVAGLLLRFTPESSVVFCNTRKEVDEVA 258

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            SLHE   S++A+ HG M   D++ V+  F N +C +L+A+ V   G+DV D S ++
Sbjct: 259 GSLHEFGFSALAL-HGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVV 314


>gi|84514467|ref|ZP_01001831.1| primosomal protein N' [Loktanella vestfoldensis SKA53]
 gi|84511518|gb|EAQ07971.1| primosomal protein N' [Loktanella vestfoldensis SKA53]
          Length = 730

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 45/264 (17%)

Query: 200 PSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA-----GQIALLLMRKQFKKEIGIP 254
           P + +A ++    RK        P R+  A D++LA     G +A  L       ++G  
Sbjct: 107 PGLGDAPSM----RKVYRLGTRDPDRKTAARDKVLAVLRDYGGLAFTLGELADAADVGTS 162

Query: 255 INVEGKIAQKIL------RNIPFSPTKSQESAIKDILQDMSQKNRMLR-----------I 297
           + V+G +AQ  +      R++P+ P        K +  D +     LR           +
Sbjct: 163 V-VKGLVAQGAVLEEDAPRDVPYPPLDPDHGG-KALNPDQAVGADALRAALRKEGYGTTL 220

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           L+G  GSGKT V L A+A  +  G QA+++ P   L+    EFI++      +       
Sbjct: 221 LKGVTGSGKTEVYLEAVAECLRMGKQALVLLPEIALSG---EFIERVEARFGMRPAEWHS 277

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
            +    RR+    +  G A +++G   ALF   + +  L L++VDE+H    +Q   +  
Sbjct: 278 GVTMTERRRCFRMVGQGDAQLVVGARSALF---LPFRNLGLIVVDEEHDTSYKQEDGVLY 334

Query: 417 KA----------TAPHVLLMTATP 430
            A              V+L +ATP
Sbjct: 335 NARDMAVLRAALCGAQVVLASATP 358


>gi|301171467|ref|NP_001180345.1| ATP-dependent RNA helicase DDX3X isoform 2 [Homo sapiens]
          Length = 661

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 413

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 414 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 466

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|296235289|ref|XP_002762845.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 1 [Callithrix
           jacchus]
 gi|297709768|ref|XP_002831596.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Pongo
           abelii]
          Length = 660

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 413

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 414 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 466

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|195394063|ref|XP_002055665.1| GJ19487 [Drosophila virilis]
 gi|194150175|gb|EDW65866.1| GJ19487 [Drosophila virilis]
          Length = 953

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E +T++   IHG  S  +++SV+  F+NG   +LIAT V   G+DV D   +I  +  + 
Sbjct: 515 EGYTATS--IHGDKSQSERDSVLKDFRNGKSNILIATDVASRGLDVEDLQFVINYDYPNS 572

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
               +H++ GR GR +++ +    + P  +K +   +SVL+
Sbjct: 573 SENYVHRI-GRTGRCQQLGTAYTFFTPDNAKQARELISVLE 612


>gi|71000162|ref|XP_754798.1| eukaryotic translation initiation factor 4 [Aspergillus fumigatus
           Af293]
 gi|74674080|sp|Q4WX43|IF4A_ASPFU RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|66852435|gb|EAL92760.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           fumigatus Af293]
 gi|159127807|gb|EDP52922.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           fumigatus A1163]
          Length = 406

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 131/301 (43%), Gaps = 62/301 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    ++    G QA+I+AP   LAQQ  + +        I   
Sbjct: 66  IAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNIECH 125

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        KAL+        +++GT    QD IQ   L        IL   DE   
Sbjct: 126 ACIGGTNVREDMKALQE----GPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLS 181

Query: 406 FGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G  +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P++ +
Sbjct: 182 RGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPVRIL 227

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------R 506
           +          ++ ++ L EG K ++I  + EE K      + E               +
Sbjct: 228 V----------KKQELTL-EGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 276

Query: 507 FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++
Sbjct: 277 VDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 336

Query: 564 I 564
           I
Sbjct: 337 I 337


>gi|310756762|gb|ADP20522.1| ATP-dependent RNA helicase DDX3X [Heterocephalus glaber]
          Length = 662

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 413

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  ID+    L ++ + GK +  +   +E KK ++    +E F     +  +
Sbjct: 414 NITQKVVWVEDIDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDFLYREGYACT 469

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           SI   HG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 470 SI---HGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|302386507|ref|YP_003822329.1| primosomal protein N' [Clostridium saccharolyticum WM1]
 gi|302197135|gb|ADL04706.1| primosomal protein N' [Clostridium saccharolyticum WM1]
          Length = 742

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 100/244 (40%), Gaps = 26/244 (10%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P+  +     K+L N      + Q++ +     D SQ  R   ++ G  GSGKT V +  
Sbjct: 195 PVKTKTGKENKVLLN------EEQQAIVDSFCLDYSQNKRTTYLIHGITGSGKTEVYMEL 248

Query: 314 MAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           +   +E G Q +++ P I +  Q    F  ++       V +I   +    R    ER  
Sbjct: 249 IQKVIEDGKQVIVLIPEIALTYQTVLRFYARFGNR----VSMINSRLSAGERYDQFERAR 304

Query: 373 HGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAP 421
           +G   IIIG   ALF     +  L L+++DE+H          R+  ++           
Sbjct: 305 NGDIDIIIGPRSALF---TPFSHLGLILIDEEHEGAYKSEVSPRYHAREVAVKRASLQGA 361

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            ++L +ATP          G+  + ++TE+      + TV + ++   E+ E  K + S 
Sbjct: 362 SLVLGSATPSLEAYTKALQGEYKLFRLTERAKKNSRLATVSV-VDLRQELKEGNKSIFSR 420

Query: 482 GKKA 485
             KA
Sbjct: 421 SLKA 424


>gi|254585603|ref|XP_002498369.1| ZYRO0G08580p [Zygosaccharomyces rouxii]
 gi|238941263|emb|CAR29436.1| ZYRO0G08580p [Zygosaccharomyces rouxii]
          Length = 539

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 136/322 (42%), Gaps = 37/322 (11%)

Query: 300 GDVGSGKTLV-------ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            + GSGKT          L++   A     + ++++P   LA Q Y+ +   T    +  
Sbjct: 170 AETGSGKTFAFGVPAIDQLVSNGDAKRKSVKVLVISPTRELASQTYDNLIILTNKVGLEC 229

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF- 406
             + G +P+  +R  L       + +++ T     D     S+   ++  +++DE  R  
Sbjct: 230 CCVYGGVPKQEQRNQLR-----NSQVVVATPGRLLDLINEQSVDLSQVQYLVLDEADRML 284

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIP---RTLVLTSLGD---IDISKITEKPAGRK 456
             G ++ +K  + Q  +     LM     P   R L  T + D   + I    E  A ++
Sbjct: 285 EKGFEEDIKNIINQTNSRDRQTLMFTATWPKEVRELASTFMRDPVKVSIGNRDELSANKR 344

Query: 457 --PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
              I  VI P  +  +++E L+   S  KK   +      KKE+   S VE  N+L ++ 
Sbjct: 345 ITQIVEVIEPRQKDRKLLELLRKYQSGAKKDDKVLIFALYKKEA---SRVE--NNL-KYN 398

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A IHG +S   + S ++ FK G   LL+AT V   G+D+ +   +I          
Sbjct: 399 GYDVAAIHGDLSQQQRTSALNDFKAGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVED 458

Query: 575 QLHQLRGRVGRGEEISSCILLY 596
            +H++ GR GR  +  +   L+
Sbjct: 459 YVHRI-GRTGRAGQTGTAHTLF 479


>gi|238650986|ref|YP_002916842.1| ATP-dependent RNA helicase RhlE [Rickettsia peacockii str. Rustic]
 gi|238625084|gb|ACR47790.1| ATP-dependent RNA helicase RhlE [Rickettsia peacockii str. Rustic]
          Length = 410

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 139/313 (44%), Gaps = 33/313 (10%)

Query: 302 VGSGKTLVALIAMAAA-VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGKTL  L+ +  + ++    A+I+ P   LA Q +  + K T + +I   ++ G  P
Sbjct: 45  TGSGKTLAYLLPLIDSFIKNKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGAP 104

Query: 361 QAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRL 412
              +   L++       +IIGT       L + S++  ++ + ++DE  R    G++++L
Sbjct: 105 MPKQFMQLKK----NPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQL 160

Query: 413 KLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +   K       VL+ +AT +P+ ++  S   ++            P++  +   N+   
Sbjct: 161 EEINKFLPEKRQVLMFSAT-MPKHIIAVSQKYLN-----------NPVRITVGATNKAAA 208

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRM 525
            I++  + +S+ +K   +  Q+  ++ S       +   ++   + ++   +   IHG +
Sbjct: 209 EIKQESMHVSDKEKFSALTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDL 268

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S   +E V+ SF+    ++++AT V   G+D+     +I  +        LH++ GR GR
Sbjct: 269 SQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRI-GRTGR 327

Query: 586 GEEISSCILLYHP 598
                  +    P
Sbjct: 328 AGATGHALSFISP 340


>gi|307702030|ref|ZP_07639038.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           mitis NCTC 12261]
 gi|307616675|gb|EFN95864.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           mitis NCTC 12261]
          Length = 447

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 136/315 (43%), Gaps = 31/315 (9%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT-- 356
            GSGKT   L+ +   ++      QAVI AP   LA Q Y+  ++   ++ + V ++   
Sbjct: 47  TGSGKTHTFLLPIFQQLDEADDSVQAVITAPSRELATQIYQAARQIAAHSDVEVRVVNYV 106

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQR 411
           G   +A   + ++++A  Q HI+IGT     D ++   L +      +VDE         
Sbjct: 107 GGTDKA---RQIDKLASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGF 163

Query: 412 LKLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           L+   K           ++ +AT IP+ L         + K    P   K IKT  +  +
Sbjct: 164 LETVDKIAGSLPKDLQFMVFSAT-IPQKLQPF------LKKYLSNPVMEK-IKTKTVISD 215

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHG 523
            ID  +   K    +  + Y +   ++      F +   R + LH + T+    +A IHG
Sbjct: 216 TIDNWLISTKG-RDKNAQIYQLTQLMQPYLAMIFVNTKMRADELHSYLTAQGLKVAKIHG 274

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            ++  +++ +M+  KN   + ++AT +   GID+   S +I +         +H++ GR 
Sbjct: 275 DIAPRERKRIMNQVKNLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRT 333

Query: 584 GRGEEISSCILLYHP 598
           GR     + I LY P
Sbjct: 334 GRNGLPGTAITLYQP 348


>gi|251789631|ref|YP_003004352.1| ATP-dependent RNA helicase DbpA [Dickeya zeae Ech1591]
 gi|247538252|gb|ACT06873.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 457

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 148/332 (44%), Gaps = 34/332 (10%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEI 354
           Q   GSGKT    + +   ++AG    Q++++ P   LA Q    +++  +    I V  
Sbjct: 46  QAKTGSGKTAAFGLGLLQHLDAGRFNTQSLVLCPTRELADQVANELRRLARGMPNIKVLT 105

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRFGVQ 409
           + G +P   +R +L        H+I+ T       L ++++    L  +++DE  R    
Sbjct: 106 LCGGVPFGLQRDSLTH----APHVIVATPGRLLDHLKKETVSLDDLRTLVLDEADRM--- 158

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             L +        V+    TP  +TL+ ++     I+ I+ +   R P+   II I+ +D
Sbjct: 159 --LDMGFADAIDEVIAQVPTPC-QTLLFSATWPEAIAAISRR-IQRDPL---IIEIDTVD 211

Query: 470 EV--IERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAII 521
           E+  +E+    +S   K   +   +  ++ ++   F +  +   +++E  T+S   +  +
Sbjct: 212 ELPAVEQQFYEVSRSGKLDLLQKLLSREQPASCVVFCNTKKDCQAVYEALTNSNQSVLAL 271

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR- 580
           HG M   D++  +  F NG+ ++L+AT V   G+D+    ++I  N E     ++H  R 
Sbjct: 272 HGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKALEMVI--NYELSWDPEVHVHRI 329

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           GR  R  E    I L  P  ++ +     +LK
Sbjct: 330 GRTARAGESGLAISLCAPEEAQRANALEEMLK 361


>gi|119492517|ref|XP_001263624.1| eukaryotic translation initiation factor 4, putative [Neosartorya
           fischeri NRRL 181]
 gi|134034146|sp|A1D7N3|IF4A_NEOFI RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|119411784|gb|EAW21727.1| eukaryotic translation initiation factor 4, putative [Neosartorya
           fischeri NRRL 181]
          Length = 398

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 131/301 (43%), Gaps = 62/301 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    ++    G QA+I+AP   LAQQ  + +        I   
Sbjct: 66  IAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNIECH 125

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        KAL+        +++GT    QD IQ   L        IL   DE   
Sbjct: 126 ACIGGTNVREDMKALQE----GPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLS 181

Query: 406 FGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G  +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P++ +
Sbjct: 182 RGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPVRIL 227

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------R 506
           +          ++ ++ L EG K ++I  + EE K      + E               +
Sbjct: 228 V----------KKQELTL-EGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 276

Query: 507 FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++
Sbjct: 277 VDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 336

Query: 564 I 564
           I
Sbjct: 337 I 337


>gi|113931550|ref|NP_001039224.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Xenopus (Silurana)
           tropicalis]
 gi|89272468|emb|CAJ82454.1| novel GUCT (NUC152) domain containing DEAD/DEAH box helicase
           [Xenopus (Silurana) tropicalis]
          Length = 755

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 138/340 (40%), Gaps = 60/340 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE------AGGQA---VIMAPIGILAQQHYEFIKKYTQN 347
           ++Q   G+GKT    I +   +       A G+A   +I+ P   LA Q    I+  T+ 
Sbjct: 220 VVQARTGTGKTFSFAIPLVERLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKK 279

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI-------- 399
            ++      G  P    ++ +  I  G    ++GT    +D +Q Y+L L +        
Sbjct: 280 LKVCC--FYGGTP---YQQQVFSIKEG-FDFLVGTPGRVRDLVQNYRLDLTVLKHVVLDE 333

Query: 400 VDEQHRFG----VQQRLKLTQKATA---PHVLLMTATP------IPRTLVLTSLGDIDIS 446
           VD     G    V++ L +  K      P  LL +AT       + +  +      ID+ 
Sbjct: 334 VDMMFDMGFSEQVEEILSVRYKPDPEENPQTLLFSATCPDWMYNVAKKYMKKQFEKIDL- 392

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
                  G +  K  I         +E L +  +  +KA  +   ++    S+ +S++  
Sbjct: 393 ------VGHRSQKAAI--------TVEHLAIECTRSQKAAVLGDIVQVYSGSHGKSIIFC 438

Query: 507 FNSLHEH--------FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            + L  H           S   +HG +   ++E ++  F+ G+ ++L+AT V   G+D+ 
Sbjct: 439 DSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGFRQGSFEVLVATNVAARGLDIP 498

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +  ++++ +A     A +H+  GR GR      CI LY P
Sbjct: 499 EVDLVVLYSAPKEADAYVHR-SGRTGRAGRTGICISLYEP 537


>gi|168486746|ref|ZP_02711254.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC1087-00]
 gi|183570245|gb|EDT90773.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC1087-00]
          Length = 447

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 153/352 (43%), Gaps = 38/352 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + F+ PT+ Q+  I  +L       R L + +   GSGKT   L+ +   ++     
Sbjct: 16  LKELKFTTPTEVQDKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDEASDS 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHII 379
            QAVI AP   LA Q Y+  ++ + ++ + V ++   G   +A   + +E++   Q HI+
Sbjct: 70  VQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKA---RQIEKLESNQPHIV 126

Query: 380 IGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTAT 429
           IGT     D ++      +K    +VDE         L+   K           ++ +AT
Sbjct: 127 IGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGCLPKDLQFMVFSAT 186

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            IP+ L         + K    P   K IKT  +  + ID  +   K    +  + Y + 
Sbjct: 187 -IPQKLQPF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-HDKNAQIYQLT 237

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN   + ++
Sbjct: 238 QLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 298 ATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|261324240|ref|ZP_05963437.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261300220|gb|EEY03717.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
          Length = 537

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 42/330 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +        +AG   A+I+AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
           T   +    G M     R+ALER     +HI++GT    +D I        Q   ++L  
Sbjct: 101 TGARIASCVGGMDIRTERRALER----GSHIVVGTPGRLRDHITRNALDMSQLRAIVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD----IDISKITEKP 452
            DE    G ++ L+  L +       L+ +AT P P   +     +    I +   T + 
Sbjct: 157 ADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQH 216

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    +   + P  R   +I  L  +  + + +   C         + R  V+   S   
Sbjct: 217 ADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIFC---------STREAVKHMASRLS 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 266 NRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
              LH+  GR GR     +C+L+   P S+
Sbjct: 326 DTLLHR-SGRTGRAGRKGTCVLVV--PFSR 352


>gi|193573502|ref|XP_001943796.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Acyrthosiphon
           pisum]
          Length = 737

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 131/319 (41%), Gaps = 36/319 (11%)

Query: 302 VGSGKTLVALIAMAAAV-------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  +  M   +       E  G   +I+AP   L+QQ Y   KK+ +   + V 
Sbjct: 288 TGSGKTLAFIWPMLVHIMDQPELKEGDGPVGLILAPTRELSQQIYVEAKKFGKIYNLRVV 347

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGV 408
              G   +  + KALE    G A II+GT     D     +    ++  +++DE  R   
Sbjct: 348 CCYGGGSKWEQSKALE----GGAEIIVGTPGRVIDLVKMSATNLTRVTFLVLDEADRM-F 402

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
               +   ++   HV      P  +TL+ ++     I K+  +     PI+ V   +   
Sbjct: 403 NMGFEPQVRSICDHV-----RPDRQTLLFSATFKKKIEKLA-RDILTDPIRIVQGDVGEA 456

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHFTSSIAI------ 520
           +  + ++ +V+ +  K  W+   + +     S    V ++ ++  E   S++++      
Sbjct: 457 NTDVAQIMLVMPQSDKCQWLLDNLVQFTSTGSILVFVTKKLDA--EQLASTLSLKEYEVL 514

Query: 521 -IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG M   ++  V+  FK     +++AT V   G+D+     ++  +         H++
Sbjct: 515 LLHGDMDQAERNKVITKFKKQEVNIMVATDVAARGLDIAHIRTVVNYDIARDIDTHTHRI 574

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR  E  +   L  P
Sbjct: 575 -GRTGRAGEKGTAFTLVTP 592


>gi|145636392|ref|ZP_01792061.1| primosome assembly protein PriA [Haemophilus influenzae PittHH]
 gi|145270557|gb|EDK10491.1| primosome assembly protein PriA [Haemophilus influenzae PittHH]
          Length = 730

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 159/389 (40%), Gaps = 94/389 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +++G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 222 LLDGVTGSGKTEIYLQYIEEILKSGKQILVLVPEIGLTPQT----VQRFKARFNVEIDVL 277

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
             N+    R    +R   GQ+ I+IGT  ALF    Q+  L  +I+DE+H    +Q+   
Sbjct: 278 HSNLTDTQRLYVWDRARSGQSAIVIGTRSALF---TQFSNLGAIILDEEHDASYKQQDSW 334

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                   + L QK     VL+ +ATP   ++     G      ++++      ++  +I
Sbjct: 335 RYHARDLAIVLAQKLNIA-VLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVI 393

Query: 464 PI------NRIDE-VIERLKVVLSEGKKAY------------------WI--CPQIEEKK 496
            +      N + + ++ER+K  L +G +                    WI  CP  E+  
Sbjct: 394 DLKNQHIQNGLSKPLLERMKSHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPY 453

Query: 497 ESNFRSVVERFN----------------SLH--------EHFTSSIAII--HGRMSDIDK 530
             +    V R +                S H        E    ++  +  H  ++ ID+
Sbjct: 454 TYHQHQNVLRCHHCGAQKTIPRQCGDCGSTHLVTTGLGTEQLEETLKTLFPHYSVARIDR 513

Query: 531 ---------ESVMDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHF 571
                    ES ++  + G  ++LI T ++           V +  VD+++  ++     
Sbjct: 514 DSTSRKGKLESYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNVDSALFSLDFRAEE 573

Query: 572 GLAQLH-QLRGRVGRGEEISSCILLYHPP 599
            LAQL+ Q+ GR GR ++    +L  H P
Sbjct: 574 RLAQLYIQVAGRAGRADKQGEVVLQTHYP 602


>gi|307611738|emb|CBX01443.1| Primosomal protein N' [Legionella pneumophila 130b]
          Length = 725

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 110/240 (45%), Gaps = 27/240 (11%)

Query: 237 QIALLLMRK--QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           QIA LL  +     +++ +P  +  K++       P +    Q  A+  I + +      
Sbjct: 164 QIAALLACQAINLSQQVTLPTKIPEKLSP------PLTLNPEQAVAVASIFEHIHHYQCF 217

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVE 353
           L  LQG  GSGKT V L  +A  +E G Q +++ P IG+  Q     + ++T      + 
Sbjct: 218 L--LQGVTGSGKTEVYLHVIAKILEQGKQVLVLVPEIGLTPQ----LLSRFTARFNHPIT 271

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR-- 411
           ++  N+ ++ R+ A +     +  ++IGT +     +    L L+I+DE+H   ++Q   
Sbjct: 272 VLHSNLNESERQIAWQLAKENKVKMVIGTRSAVFTPLP--NLGLIIIDEEHDSSLKQMEG 329

Query: 412 LKLTQKATA---PH-----VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           ++ + + TA    H     ++L TATP   T+        ++ ++T K A   P+   +I
Sbjct: 330 VRYSARDTALMRAHLANIPIILGTATPSLETIHNCKQKKYNLLRLTHKAASTTPLHYQLI 389


>gi|159044475|ref|YP_001533269.1| primosome assembly protein PriA [Dinoroseobacter shibae DFL 12]
 gi|157912235|gb|ABV93668.1| primosomal protein N' [Dinoroseobacter shibae DFL 12]
          Length = 727

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 27/189 (14%)

Query: 263 QKILRNIPFSP----------TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           Q   R++P+ P          T  QE+A   +L  +  +     +L+G  GSGKT V L 
Sbjct: 173 QDTPRDLPYPPLDPARPGKPLTPEQEAAAGHLLHGIEAEAYGTTLLKGVTGSGKTEVYLE 232

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           A+AA +  G QA+++ P   L+    EF+ +               +    RR+    +A
Sbjct: 233 AVAACLAKGRQALVLLPEIALSA---EFLTRVEARFGARPAEWHSGVTMTERRRCWRMVA 289

Query: 373 HGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------TAP 421
            G A  ++G   ALF   + +  L L++VDE+H    +Q   +   A           + 
Sbjct: 290 EGGARFVVGARSALF---LPFQDLGLIVVDEEHDTSYKQEEGVLYNARDMAVLRASLASA 346

Query: 422 HVLLMTATP 430
            V+L +ATP
Sbjct: 347 QVVLASATP 355


>gi|50420221|ref|XP_458643.1| DEHA2D04048p [Debaryomyces hansenii CBS767]
 gi|74602737|sp|Q6BT27|FAL1_DEBHA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49654310|emb|CAG86782.1| DEHA2D04048p [Debaryomyces hansenii]
          Length = 399

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 138/335 (41%), Gaps = 45/335 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P+  Q  AI   +Q +S K+    I Q   G+GKT    I M   ++      QA+I++
Sbjct: 48  APSAIQSRAI---MQIISGKDT---IAQAQSGTGKTATFSIGMLEVIDTKSKDCQALILS 101

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ    +K       +      G     H  + ++++  GQ  I+ GT     D
Sbjct: 102 PTRELAQQIQSVVKHLGDYMNVHTHACIGG---THVGEDIKKLQQGQ-QIVSGTPGRVVD 157

Query: 389 SIQYYKLI-----LVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L      ++I+DE       G ++++    +   P V ++  +      VL   
Sbjct: 158 MIKRRNLATRNIKMMILDEADELMTKGFKEQIYEIYRYLPPGVQVVVVSATLSREVLEVT 217

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
           G     K T  P        V I + R D  +E +K    + +K  W    + +  +S  
Sbjct: 218 G-----KFTTDP--------VKILVKRDDITLEGIKQYHIQCEKEDWKFDTLCDLYDSLT 264

Query: 499 --------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   N +  V       +    ++  +HG M   +++S+M+ F+ G  ++LI+T V
Sbjct: 265 ITQAVIFCNTKVKVNWLTDQMKKANFTVVAMHGDMKQDERDSIMNDFRTGNSRVLISTDV 324

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              GIDV   S++I  +        +H++ GR GR
Sbjct: 325 WARGIDVQQVSLVINYDLPTDKENYVHRI-GRSGR 358


>gi|254693665|ref|ZP_05155493.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 3 str. Tulya]
 gi|261213932|ref|ZP_05928213.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|260915539|gb|EEX82400.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
          Length = 482

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 147/347 (42%), Gaps = 61/347 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+    +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQVGAIPPALE----RKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +  KL+L     +++DE  R        +      P +  +    P  R TL  +
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADR--------MLDMGFIPDIERICKLIPFTRQTLFFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDE-VIERL---------------KVVLSEG 482
           +    +I+K+TE+     P++  +   +   + V +RL                ++ SEG
Sbjct: 186 ATMPPEITKLTEQFL-HSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEG 244

Query: 483 ---KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
              K A   C        +  + V E F SL  H   + A+ HG M    + +++ SFK+
Sbjct: 245 DSLKNAIIFC--------NRKKDVSELFRSLTRHEFDAGAL-HGDMDQRARMAMLSSFKD 295

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR 
Sbjct: 296 GKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRA 341


>gi|294947724|ref|XP_002785462.1| ATP-dependent RNA helicase DBP3, putative [Perkinsus marinus ATCC
           50983]
 gi|239899373|gb|EER17258.1| ATP-dependent RNA helicase DBP3, putative [Perkinsus marinus ATCC
           50983]
          Length = 481

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 147/328 (44%), Gaps = 42/328 (12%)

Query: 301 DVGSGKTL-VALIAMAAAVEAGGQAVIM--APIGILAQQHYEFIKKYTQNTQIIVEI-IT 356
           + GSGKTL  AL  M+ A++ G  +++M  +P   LA+Q +E I    +  Q +  I + 
Sbjct: 89  ETGSGKTLGFALPFMSKAMQKGDDSMMMVLSPTRELARQIHEVIVDVDKKKQKLPSICLY 148

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHA----LFQD-SIQYYKLILVIVDEQHRFGVQQR 411
           G  P+  ++K L +  H    I++GT      L QD S+  YK+   ++DE  R      
Sbjct: 149 GGTPKWEQQKQL-KAEH--PRIVVGTPGRVLDLLQDGSLDLYKVNYAVLDEADRM----- 200

Query: 412 LKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---- 466
           L +    +   +     +P  R +L+ ++  + ++ +++ K   R+ I   ++  N    
Sbjct: 201 LDMGFLPSVTDIFGYLPSPDKRQSLMFSATWNKEVRRLSRKLMKRERITVTVMGSNETKG 260

Query: 467 ---------RIDEVIERLKVVLSEGKKAYW----ICPQIEEKKESNF----RSVVERFNS 509
                    RI + I+ ++    +  + ++    +CP     K   F    +       +
Sbjct: 261 NEDELTANTRITQTIDIVQDRKPKMNRLWYHLGNLCPNKGVWKVIVFALYKKEAAHLERT 320

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +++   +  +HG M+ + +E+ +  F  G   +L+AT V   G+DV D + +I     
Sbjct: 321 LRDYY--DVVGLHGDMTQMAREASIKRFTEGQNLILVATDVAARGLDVKDVTGVINYTFP 378

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYH 597
                 +H++ GR GR     + + +++
Sbjct: 379 LVIEDYVHRI-GRTGRAGRTGNAVTIFN 405


>gi|322388235|ref|ZP_08061839.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           infantis ATCC 700779]
 gi|321140907|gb|EFX36408.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           infantis ATCC 700779]
          Length = 447

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 155/358 (43%), Gaps = 38/358 (10%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           K  ++ L  + F+ PT+ QE  I  +L       R L + +   GSGKT   L+ +   +
Sbjct: 10  KYIEEALEELKFTTPTEVQEKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQL 63

Query: 319 EAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAH 373
           +      QAVI AP   LA Q Y+  ++   ++ + + ++   G   +A   + ++++A 
Sbjct: 64  DEESDSVQAVITAPSRELATQIYQAARQIASHSDVEIRVVNYVGGTDKA---RQIDKLAS 120

Query: 374 GQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HV 423
            Q HI+IGT     D ++      +K    +VDE         L+   K           
Sbjct: 121 NQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQF 180

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           ++ +AT IP+ L         + K    P   K IKT  +  + ID  +   K    +  
Sbjct: 181 MVFSAT-IPQKLQPF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-RDKNA 231

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           + Y +   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN 
Sbjct: 232 QIYELTQVMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|446778|prf||1912301A initiation factor eIF-4A
          Length = 402

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 123/290 (42%), Gaps = 41/290 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q    +    +  ++   
Sbjct: 71  IAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSH 130

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------QYYKL-ILVIVDEQHRF 406
              G      R  A  RI     H+++GT     D I      QY KL +L   DE    
Sbjct: 131 ACIGGT--NVREDA--RILESGCHVVVGTPGRVYDMINRKLRTQYIKLFVLDEADEMLSR 186

Query: 407 GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           G + +++   K   P   V+L++AT  P  L ++            +   R P+    I 
Sbjct: 187 GFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVS------------RCFMRDPVS---IL 231

Query: 465 INRIDEVIERLKVVLSEGKKAYW----ICPQIEE---KKESNFRSVVERFNSLHEHFT-- 515
           + + +  +E +K      K+  W    +C   +     +   F +   + + L +  +  
Sbjct: 232 VKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCTTRRKVDQLTQEMSIH 291

Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             +++ +HG M   D+E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 292 NFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 341


>gi|88857449|ref|ZP_01132092.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family protein [Pseudoalteromonas
           tunicata D2]
 gi|88820646|gb|EAR30458.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family protein [Pseudoalteromonas
           tunicata D2]
          Length = 435

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 125/288 (43%), Gaps = 25/288 (8%)

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           V +  +A+++AP   LA+Q     ++Y +   I V  I G +  +H+ +A++  A   A 
Sbjct: 71  VASNAKALVLAPTRELAEQIANSFERYGKYLDISVAAIFGGV--SHKGQAIKLKA--GAD 126

Query: 378 IIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATAP--HVLLMT 427
           II+ T     + IQ   + L     +++DE  R    G    +K+   A       LL +
Sbjct: 127 IIVATPGRLLEHIQMCNVSLSNVSFLVLDEADRMLDMGFINDIKMLMAAVNDERQTLLFS 186

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKA 485
           AT  P ++   S   +   KI +        +TV   +  ++E   R   +LSE  G+K 
Sbjct: 187 AT-YPSSMKQFSASVLKQPKIVQATKDNSTAETVQHVVYPVEE--RRKNELLSELIGRKN 243

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +         KE+   SVVE  N     F  S A+ HG  +   +   +  FK G  ++L
Sbjct: 244 WHQVLVFVNMKET-ASSVVEELN----QFGISAAVCHGDKTQGARRRALREFKEGKVRVL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +AT V   G+D+V    +I  +        +H++ GR GR   I   +
Sbjct: 299 VATEVAARGLDIVGLERVINVDLPFLAEDYVHRI-GRTGRAGNIGQAV 345


>gi|115398415|ref|XP_001214799.1| hypothetical protein ATEG_05621 [Aspergillus terreus NIH2624]
 gi|121737771|sp|Q0CL13|DBP3_ASPTN RecName: Full=ATP-dependent RNA helicase dbp3
 gi|114192990|gb|EAU34690.1| hypothetical protein ATEG_05621 [Aspergillus terreus NIH2624]
          Length = 493

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 138/323 (42%), Gaps = 37/323 (11%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AVI++P   LA Q ++ ++K+       V  I G + +  +R+ L+      A+I++ T 
Sbjct: 155 AVIISPTRELAMQIHDQLQKFAGPVGAKVACIFGGVRKDEQREVLK-----TANIVVATP 209

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLK---LTQKATAPHVLLMTAT--P 430
              +D     S+   K+  +++DE  R    G +Q +K        +    ++ TAT  P
Sbjct: 210 GRLKDLQNDGSVDLGKVRYLVLDEADRMLDKGFEQDIKDIIQPMPVSKRQTVMFTATWPP 269

Query: 431 IPRTLVLTSLGDIDISKITEKPAGR-------KPIKTVIIPINRIDEVIERLKVVLSEGK 483
           + R L  T +       I   P+         K +  V+ P  +   +++ LK      +
Sbjct: 270 VVRELASTFMSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKEGRLVQLLKQHQRGAE 329

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           K    C     KKE+   + +ERF    +     +A IHG +S  ++   +D+FK G   
Sbjct: 330 KVLAFC---LYKKEA---TRIERF---LQSRGFKVAGIHGDLSQQERFRSLDAFKTGAAT 380

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+D+    ++I           +H++ GR GR       I L+       
Sbjct: 381 VLVATDVAARGLDIPAVKLVINVTFPLTVEDYVHRI-GRTGRAGAEGHAITLFTETDKAQ 439

Query: 604 SYTRLSVLKNTEDGFLIAEEDLK 626
           S   ++VLK    G  + EE LK
Sbjct: 440 SGALINVLKAA--GQEVPEELLK 460


>gi|17647335|ref|NP_524019.1| Gemin3 [Drosophila melanogaster]
 gi|5679086|gb|AAD46851.1|AF160911_1 BcDNA.LD05563 [Drosophila melanogaster]
 gi|7294824|gb|AAF50157.1| Gemin3 [Drosophila melanogaster]
          Length = 1028

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 153/351 (43%), Gaps = 59/351 (16%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQ 323
           RN   +PTK Q +AI   L       +M  I+Q   G+GKTL+ +IA+  +         
Sbjct: 42  RNNFVTPTKIQAAAIPMALA------KMDLIIQSKSGTGKTLIYVIAVVQSFNPNINQPH 95

Query: 324 AVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           A+I+ P   LA Q    F                G    A  RK +      ++ +IIGT
Sbjct: 96  AMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDRKRM-----NESRVIIGT 150

Query: 383 HA----LFQDSI-QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL--LMTATPIPRTL 435
                 L+++ +    KL L+++DE          +L Q  +  H +  L+ A P  R +
Sbjct: 151 PGRLLHLYENRVFDVSKLRLLVLDEAD--------QLYQTKSLQHTVSKLIEAMPKNRQI 202

Query: 436 VLTSLG-----DIDISKITEKPA--GRKPIKTVIIPI-----------NRIDEVIERLKV 477
           +  S       D  ++K+ +KP         TV++ I           N ++E+  +L++
Sbjct: 203 IACSATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRLKLQI 262

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534
           +   G+    I  Q+  ++   F S   R +S   + T+S     +I G M   ++  V 
Sbjct: 263 L---GQ----IFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVF 315

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           + ++N T ++L+AT ++  G+D   A+++I  +     +  LH++ GR GR
Sbjct: 316 EGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRI-GRAGR 365


>gi|86139166|ref|ZP_01057736.1| primosomal protein N' [Roseobacter sp. MED193]
 gi|85824010|gb|EAQ44215.1| primosomal protein N' [Roseobacter sp. MED193]
          Length = 736

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 37/213 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L A+A+ +  G QA+++ P I + A    EF+K+  Q         
Sbjct: 226 LLKGVTGSGKTEVYLEAVASCLRKGRQALVLLPEIALTA----EFLKRVEQRFGATPAEW 281

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
                   RR+    +  G A ++IG   ALF   + +  L L+IVDE+H    +Q   +
Sbjct: 282 HSGATMTERRRVWRMLGQGNAQLVIGARSALF---LPFRDLGLIIVDEEHDSAYKQEEGV 338

Query: 415 TQKA----------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
              A           +  V+L +ATP   T      G      +T +        T ++P
Sbjct: 339 LYNARDMAVLRAAMCSAQVVLASATPSLETWSNAEAGKYKRVNLTAR------FGTAVLP 392

Query: 465 INRIDEVIERLKVVLSEGKK---AYWICPQIEE 494
           +         +K V   G+    A WI P +++
Sbjct: 393 V---------MKAVDMRGEDLAPATWISPTLKQ 416


>gi|331086047|ref|ZP_08335130.1| hypothetical protein HMPREF0987_01433 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406970|gb|EGG86475.1| hypothetical protein HMPREF0987_01433 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 747

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 17/206 (8%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +  K  +   F  T++Q++AI    ++  +  R   ++ G  GSGKT V +  +   +  
Sbjct: 193 VTAKRTKQQSFCYTEAQQAAIHIFCEEYRRGKRGTYLVYGVTGSGKTEVYMEMIEHVIAE 252

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G QA+++ P   L    Y+ + ++ Q     V II   + +  R   + R   G+ +++I
Sbjct: 253 GKQAIVLIPEIALT---YQTVMRFYQRFGDRVSIINSRLSKGERYDQMLRAKRGEINVMI 309

Query: 381 GTH-ALFQDSIQYYKLILVIVDEQHR--FGVQQRLKLTQKATA--------PHVLLMTAT 429
           G   ALF     + +L L+I+DE+H   +  +Q  +   + TA          V+L +AT
Sbjct: 310 GPRSALF---TPFERLGLIIIDEEHEGTYKSEQTPRYHARETAIARAAMEGASVVLGSAT 366

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGR 455
           P          G+  + ++ E+   R
Sbjct: 367 PSMEAFYKAVTGEFRLLRLPERAKQR 392


>gi|189205421|ref|XP_001939045.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187975138|gb|EDU41764.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 690

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 164/424 (38%), Gaps = 90/424 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKT------LVALIAMAAAVEA---- 320
           PT  Q +AI   LQ         R L G    GSGKT      L+A I+    ++A    
Sbjct: 292 PTPIQRAAIPIALQ--------CRDLIGVAKTGSGKTAAFLLPLLAYISQLPPLDAINRH 343

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G  A+I+AP   LAQQ  E  +K+         ++ G     H  +         A II
Sbjct: 344 DGPYALILAPTRELAQQIEEEARKFATPLGFRTAVLVG----GHSIEEQSFQMRDGAEII 399

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQ--------------------- 410
           I T     D I+   L+L     VI+DE  R    G ++                     
Sbjct: 400 IATPGRLNDCIERRVLVLSQCTYVIMDEADRMIDMGFEEPVNKILAALPVNNEKPDTEEA 459

Query: 411 -----------RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
                      R  +   AT P  L   A    R   + ++G++  +  T        ++
Sbjct: 460 EDADAMKRGLYRQTMMYTATMPPALERIAKQYSRRPAIVTIGNLGEATDT--------VE 511

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
             +  I   ++  +RL+ +L+ G+ A  I   +      N +   +      +H   S A
Sbjct: 512 QRVEFIQGEEKRKKRLQEILTSGEFAPPIIVFV------NIKRNCDAIARDIKHMGFSSA 565

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG  +   +E+ + + K+G   +L+AT +   GID+ D S+++  N      A  H++
Sbjct: 566 TMHGSKTQEQREAALAALKSGQTNVLVATDLAGRGIDIPDVSLVVNFNMPSSIEAYTHRI 625

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ--------RKEG 631
            GR GR ++  + I  +    +   Y    +L  T+       EDL++        +K G
Sbjct: 626 -GRTGRQDKKGTAITFWGNEDADVLYDLKQIL--TKSNLSKVPEDLRKHEAAQQKGKKRG 682

Query: 632 EILG 635
           E++G
Sbjct: 683 EVMG 686


>gi|148226262|ref|NP_001080283.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Xenopus laevis]
 gi|27924277|gb|AAH44972.1| Pl10-prov protein [Xenopus laevis]
          Length = 697

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 90/425 (21%), Positives = 172/425 (40%), Gaps = 77/425 (18%)

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGI 253
              SF       +   + R  +D +W+ P A       EL +G    +     F+K   I
Sbjct: 153 NNSSFGRFDRGNSRWSDERNDED-DWSKPLAPNDRVEQELFSGSNTGI----NFEKYDDI 207

Query: 254 PINVEGK-------------IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLR 296
           P++  G              + + I+ NI  +    PT  Q+ AI  I+     K  ++ 
Sbjct: 208 PVDATGSNCPPHIECFQDVDMGEIIMGNIQLTRYTRPTPVQKHAIPIIIG----KRDLMA 263

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------------------AVIMAPIGILAQ 335
             Q   GSGKT   L+ + + + A G                      ++++AP   LA 
Sbjct: 264 CAQ--TGSGKTAAFLLPILSQIYADGPGDAMKHLKDNGRYGRRKQFPLSLVLAPTRELAV 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           Q YE  +K+   +++   ++ G      + + LER      H+++ T     D ++  K+
Sbjct: 322 QIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKI 377

Query: 396 IL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVL---LMTATPIPRTLVLTSLGD 442
            L     +++DE  R     F  Q R  + Q    P  +   +M +   P+ + + +   
Sbjct: 378 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDF 437

Query: 443 ID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           +D      +    +  + I   ++ +  +D+    L ++ + GK +  +   +E KK ++
Sbjct: 438 LDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNATGKDSLTLV-FVETKKGAD 496

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
               +E F   HE +  +   IHG  S  D+E  +  F++G C +L+AT V   G+D+ +
Sbjct: 497 ---ALEDF-LYHEGY--ACTSIHGDRSQRDREEALHQFRSGKCPILVATAVAARGLDISN 550

Query: 560 ASIII 564
              +I
Sbjct: 551 VKHVI 555


>gi|34581357|ref|ZP_00142837.1| ATP-dependent RNA helicase RhlE [Rickettsia sibirica 246]
 gi|28262742|gb|EAA26246.1| ATP-dependent RNA helicase RhlE [Rickettsia sibirica 246]
          Length = 410

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 139/313 (44%), Gaps = 33/313 (10%)

Query: 302 VGSGKTLVALIAMAAA-VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGKTL  L+ +  + ++    A+I+ P   LA Q +  + K T + +I   ++ G  P
Sbjct: 45  TGSGKTLAYLLPLIDSFIKNKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEP 104

Query: 361 QAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRL 412
              +   L++       +IIGT       L + S++  ++ + ++DE  R    G++++L
Sbjct: 105 MPKQFMQLKK----NPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQL 160

Query: 413 KLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +   K       VL+ +AT +P+ ++  S   ++            P++  +   N+   
Sbjct: 161 EEINKFLPEKRQVLMFSAT-MPKHIIAVSQKYLN-----------NPVRITVGATNKAAA 208

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRM 525
            I++  + +S+ +K   +  Q+  ++ S       +   ++   + ++   +   IHG +
Sbjct: 209 EIKQESMHVSDKEKFSALTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDL 268

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S   +E V+ SF+    ++++AT V   G+D+     +I  +        LH++ GR GR
Sbjct: 269 SQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRI-GRTGR 327

Query: 586 GEEISSCILLYHP 598
                  +    P
Sbjct: 328 AGATGHALSFISP 340


>gi|220928950|ref|YP_002505859.1| primosomal protein N' [Clostridium cellulolyticum H10]
 gi|219999278|gb|ACL75879.1| primosomal protein N' [Clostridium cellulolyticum H10]
          Length = 818

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 115/252 (45%), Gaps = 36/252 (14%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P  PT+ Q + +  + + +  +     +L G  GSGKT V L  ++   E G +A+++ P
Sbjct: 278 PLPPTEDQANTLMFLKKQLDSRTFQETLLHGITGSGKTEVYLQLISHCFELGKKAILLVP 337

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            I +  Q    F+ ++       V +I   +    R    + I  G+  +++G  +    
Sbjct: 338 EISLTPQMVERFVSRFGNR----VAVIHSKLSLGERFDQWKLIRDGKVDVVVGARSAVFA 393

Query: 389 SIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLM---TATPIPRTL 435
            ++   L L+++DE+H          R+  ++   + QK    +  L+   +ATP   T 
Sbjct: 394 PVE--NLGLIVIDEEHESSYKSESLPRYNAKE---VAQKRCEINDCLLVYGSATPSIETY 448

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW---ICPQI 492
             T  G I + ++  +P      KT I+P  +++ V  RL+  L  G K  +   +  ++
Sbjct: 449 YNTETGKIQLLEMKNRP------KTAILP--KVELVDMRLE--LENGNKTPFSSRLVEEL 498

Query: 493 EEKKESNFRSVV 504
           ++ +E+N +S++
Sbjct: 499 QKNRENNQQSIL 510


>gi|118444590|ref|YP_878428.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118135046|gb|ABK62090.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 371

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 167/374 (44%), Gaps = 61/374 (16%)

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR--ILQGDVGSGK 306
           K +GI  N+   ++++ ++    SPT  QE++I+ I        +M +  I +   G+GK
Sbjct: 5   KNLGISKNIIDILSREGIK----SPTPIQENSIEFI--------KMGKDVIAEAQTGTGK 52

Query: 307 TLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           TL  L+ +   +       Q +I+ P   LA Q  E   K  +   I +    G      
Sbjct: 53  TLAFLLPIFENISLESNFVQVLIVTPTRELAIQITEEAMKLKKAKDINILAAYGGKDIQS 112

Query: 364 RRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           + K L+    G   +II T     D     +I+  KL  +++DE       Q L +  K 
Sbjct: 113 QLKKLK----GNIQLIIATPGRLLDHLNRSTIKLDKLKTLVLDE-----ADQMLYMGFKN 163

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV----IER 474
               ++  T+    +TL  ++  + D+ K+  +      + +V     + +EV    I++
Sbjct: 164 EVEKIISYTSKK-HQTLCFSATMNSDVKKLAYRYMKEPKVVSV-----KAEEVTLKNIQQ 217

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS---SIAIIHGRMS 526
             V  ++ +K   +C  ++E  ++ F +++      R ++L E       +   +HG ++
Sbjct: 218 FVVETTDRRKQDALCSVLDE--DNPFMAIIFCRTKRRVDNLEEALHKRGYNCDKLHGDLA 275

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGR 582
              +E VM  FKN   + LIAT V   G+D+   + +    I ENAE +    +H++ GR
Sbjct: 276 QAKRERVMKKFKNMDTQYLIATDVAARGLDITGVTHVYSYDIPENAESY----IHRI-GR 330

Query: 583 VGR-GEEISSCILL 595
            GR GEE  +C+ +
Sbjct: 331 TGRAGEEGKTCLFI 344


>gi|126343381|ref|XP_001380653.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
           [Monodelphis domestica]
          Length = 744

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 139/349 (39%), Gaps = 79/349 (22%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   +          +++AP   LA Q  +  +  T+ 
Sbjct: 183 IAQARTGTGKTFSFAIPLIEKLQRDQEELKKTRSPKVLVLAPTRELANQVAKDFQDITR- 241

Query: 348 TQIIVEIITGNMPQA----HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----V 398
            ++ V    G  P      H R+ ++        I++GT    +D +Q  +L L     V
Sbjct: 242 -KLSVACFYGGTPYQGQINHIRRGID--------ILVGTPGRIKDHLQSGRLDLSKLRHV 292

Query: 399 IVDEQHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVL 437
           ++DE     V Q L +               T     P  LL +AT       + +  + 
Sbjct: 293 VLDE-----VDQMLDMGFADQVEDIIHGSYKTGSEDNPQTLLFSATCPQWVYKVAKKYMK 347

Query: 438 TSLGDID-ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           T   +ID + K+T+K A                  +E L +     ++A  I   I+   
Sbjct: 348 TKYEEIDLVGKMTQKTA----------------TTVEHLAIQCHWSQRAAVIGDVIQVYS 391

Query: 497 ESNFRSVV---ERFN----SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            ++ R+++    + N    +L+ H   +   +HG ++   +E  +  F+ G+ K+L+AT 
Sbjct: 392 GNDGRAIIFCETKKNVAEMALNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATN 451

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           V   G+D+ +  ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 452 VAARGLDIPEVDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 499


>gi|89072882|ref|ZP_01159439.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34]
 gi|89051404|gb|EAR56859.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34]
          Length = 496

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 125/300 (41%), Gaps = 55/300 (18%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHII 379
           +A+++ P   LA Q  E +  Y++N ++   ++ G +   PQ      + R+  G A ++
Sbjct: 75  RALVLTPTRELAAQVGESVATYSKNLRLSSAVVFGGVKVNPQ------MLRMRKG-ADVL 127

Query: 380 IGTHALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T         Q+++++  + ++++DE  R      ++  +K       ++   P  R 
Sbjct: 128 VATPGRLMDLHSQNAVKFRDVEILVLDEADRMLDMGFIRDIRK-------ILALLPKERQ 180

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            +L S    D  +   K     P++  + P N+    +++            WICP +++
Sbjct: 181 NLLFSATFSDEIRELAKGLVSNPVEIDVNPRNQTARTVKQ------------WICP-VDQ 227

Query: 495 KKESN----------------FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMD 535
           KK+ N                F       N L  H  S   S A IHG  S   +   + 
Sbjct: 228 KKKPNLLTKLLNKRNWKQVLVFTKTKHGANKLATHLESRGISAAAIHGNKSQGARTKALA 287

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK+G  ++L+AT +   G+D+     ++  +  H     +H++ GR GR   +   I L
Sbjct: 288 NFKSGDIRVLVATDIAARGLDIEQLPQVVNFDLPHVAEDYVHRI-GRTGRAGCVGEAISL 346


>gi|332113313|gb|AEE02033.1| X-linked DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Sus scrofa]
          Length = 661

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 413

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 414 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 466

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514


>gi|312622191|ref|YP_004023804.1| DEAD/DEAH box helicase domain-containing protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202658|gb|ADQ45985.1| DEAD/DEAH box helicase domain protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 1094

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 135/324 (41%), Gaps = 56/324 (17%)

Query: 302 VGSGKTLVALI-AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGK+L+  I A+  A +     +I++P+  L +   E +K    N     E I   + 
Sbjct: 334 TGSGKSLLFQIPAIYLAEKKNAVTIIVSPLISLMRDQVESLK---DNGVNFAETINSQVT 390

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQH-------RFGV 408
            + +   ++++  G+  II  +      S     I   KL L ++DE H        F V
Sbjct: 391 YSEKEIIIQKLKDGEISIIYLSPEFLLSSPIETLIGNRKLGLFVIDEAHLVTTWGRDFRV 450

Query: 409 Q--------QRLKLTQKATAPHVLLMTATPI---PRTLVLTSLGDIDISKITEK--PAGR 455
                    ++L+       P V+ +TAT +   P  +VL ++ ++++ K      PA R
Sbjct: 451 DYWYLGDYIKKLRELLNMKFP-VVCLTATAVYQGPDDMVLETVENLNLRKCKYYLGPAKR 509

Query: 456 KPI-------KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
           + I       K ++   +R  I+   ER++  L   +K+   CP       ++  S+   
Sbjct: 510 ENIEFEIKYHKDLVGSHDRFKIERAKERIEEFLERKEKSVIYCPYT-----THVESIYNE 564

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            ++ ++HF   +   +G +  + K      FK G  K++I T    +G+DV D     I 
Sbjct: 565 LDAKYKHF---VGKYYGDLDKLTKNDNQVEFKEGVKKIMICTKAFGMGVDVKD-----IV 616

Query: 567 NAEHFG----LAQLHQLRGRVGRG 586
           N  H+     LA   Q  GR  R 
Sbjct: 617 NIYHYAPTGNLADYVQEIGRAARN 640


>gi|311110992|ref|ZP_07712389.1| ATP-dependent RNA helicase [Lactobacillus gasseri MV-22]
 gi|311066146|gb|EFQ46486.1| ATP-dependent RNA helicase [Lactobacillus gasseri MV-22]
          Length = 426

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 124/307 (40%), Gaps = 28/307 (9%)

Query: 302 VGSGKTLV-ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G+GKTL   L  M    E GG+ VI+ P   LA Q    +  Y +   +    + G   
Sbjct: 56  TGTGKTLAYGLPVMERIDEIGGRGVILEPTTELAIQTRNNLLPYAKALGLKTIALVG--- 112

Query: 361 QAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
             +R++ LER+   +  III T   F     ++ I+Y  +  +++DE        +L L 
Sbjct: 113 AGNRKRQLERLKKEKPEIIIATPGRFFDFLSENRIKYQDINALVIDEADDILEFAKLDLL 172

Query: 416 QK-----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
                  ++   +LL  A+    T     L +     +  +P  +  +K   + ++   +
Sbjct: 173 SSLGQNLSSTAQILLFGASESEVTKNAEDLFNHTFLLVDVRPEQKSEVKHYFLQVSNEYK 232

Query: 471 V--IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
           +  ++RL  +       ++   + E            RF  +  H  +  A++    S  
Sbjct: 233 MQFLQRLAKLDKFKGILFFDSTETEM-----------RFARIFSHSKTKFAVLSNETSKQ 281

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           ++E ++  FK G  K L AT +   G+D+ D S +I           LH+  GR GR  +
Sbjct: 282 NREKLLSDFKAGRIKFLFATDLAARGLDLPDVSYVINFEIPSEVNTYLHR-SGRTGRMNK 340

Query: 589 ISSCILL 595
             + + L
Sbjct: 341 SGTVVTL 347


>gi|77408189|ref|ZP_00784934.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
 gi|77173204|gb|EAO76328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
          Length = 447

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 136/313 (43%), Gaps = 27/313 (8%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +   ++      Q VI AP   LA Q Y+  K+  ++++  + ++   
Sbjct: 47  TGSGKTHTFLLPIFEKLDESSDDVQVVITAPSRELATQIYQATKQIAEHSEQEIRVVN-Y 105

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLK 413
           +    + + +E++   Q HI+IGT     D ++   L++      +VDE         L 
Sbjct: 106 VGGTDKLRQIEKLKVSQPHIVIGTPGRIYDLVKSGDLVIHKAHTFVVDEADMTLDMGFLD 165

Query: 414 LTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
              K          +L+ +AT IP+ L         + K    P   K IKT  +  + I
Sbjct: 166 TVDKIAGSLPKDVQILVFSAT-IPQKLQPF------LKKYLTNPVMEK-IKTATVIADTI 217

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRM 525
           D  +   K    +  +   +   ++      F +  ER + LH + +S+   +A IHG +
Sbjct: 218 DNWLLSTKG-RDKNAQILELSKLMQPYLAMIFVNTKERADELHSYLSSNGLKVAKIHGGI 276

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +  +++ +M+  KN   + ++AT +   GID+   S +I +         +H++ GR GR
Sbjct: 277 APRERKRIMNQVKNLEFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGR 335

Query: 586 GEEISSCILLYHP 598
                + I LY P
Sbjct: 336 NGLSGTAITLYQP 348


>gi|296237741|ref|XP_002763877.1| PREDICTED: ATP-dependent RNA helicase DDX3Y-like [Callithrix
           jacchus]
          Length = 647

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK----------- 260
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 117 KSDEDDWSKPLPPSERLERELFSGGNTGI-----NFEKYDEIPVEATGSNCPPHIENFSD 171

Query: 261 --IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             + + IL NI  +    PT  Q+ AI  I      K  ++   Q   GSGKT   L+ +
Sbjct: 172 IDMGEIILGNIELTRYTRPTPVQKHAIPII----KGKRDLMACAQ--TGSGKTAAFLLPI 225

Query: 315 AA------------AVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            +            AV+  G+         ++++AP   LA Q YE  +K++  +++   
Sbjct: 226 LSQIYTDGPGEALKAVKGNGRCGRRKQYPVSLVLAPTRELAVQIYEEARKFSYRSRVRPC 285

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  +   
Sbjct: 286 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIALDFCKYLVLDEADKMLD 341

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 342 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 400

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   +I +  +D+    L ++ + G+ +  +   +E KK ++    +E F     H  +
Sbjct: 401 NITQKVIWVEDLDKRSFLLDILGATGRDSLTLV-FVETKKGAD---SLEDFLYHEGHACT 456

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           SI   HG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 457 SI---HGDRSQRDREEALRQFRSGRSPILVATAVAARGLDISNVRHVI 501


>gi|163916596|gb|AAI57756.1| LOC734085 protein [Xenopus (Silurana) tropicalis]
          Length = 758

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 138/340 (40%), Gaps = 60/340 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE------AGGQA---VIMAPIGILAQQHYEFIKKYTQN 347
           ++Q   G+GKT    I +   +       A G+A   +I+ P   LA Q    I+  T+ 
Sbjct: 220 VVQARTGTGKTFSFAIPLVERLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKK 279

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI-------- 399
            ++      G  P    ++ +  I  G    ++GT    +D +Q Y+L L +        
Sbjct: 280 LKVCC--FYGGTP---YQQQVFSIKEG-FDFLVGTPGRVRDLVQNYRLDLTVLKHVVLDE 333

Query: 400 VDEQHRFG----VQQRLKLTQKATA---PHVLLMTATP------IPRTLVLTSLGDIDIS 446
           VD     G    V++ L +  K      P  LL +AT       + +  +      ID+ 
Sbjct: 334 VDMMFDMGFSEQVEEILSVRYKPDPEENPQTLLFSATCPDWMYNVAKKYMKKQFEKIDL- 392

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
                  G +  K  I         +E L +  +  +KA  +   ++    S+ +S++  
Sbjct: 393 ------VGHRSQKAAI--------TVEHLAIECTRSQKAAVLGDIVQVYSGSHGKSIIFC 438

Query: 507 FNSLHEH--------FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            + L  H           S   +HG +   ++E ++  F+ G+ ++L+AT V   G+D+ 
Sbjct: 439 DSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGFRQGSFEVLVATNVAARGLDIP 498

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +  ++++ +A     A +H+  GR GR      CI LY P
Sbjct: 499 EVDLVVLYSAPKEADAYVHR-SGRTGRAGRTGICISLYEP 537


>gi|67459931|ref|NP_001019988.1| probable ATP-dependent RNA helicase DDX46 [Danio rerio]
 gi|82277867|sp|Q4TVV3|DDX46_DANRE RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46
 gi|66473312|gb|AAY46301.1| DEAD box protein 46 [Danio rerio]
          Length = 1018

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 134/311 (43%), Gaps = 43/311 (13%)

Query: 302 VGSGKTLVALIAMAAAV-------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+  L+ M   +       EA G  AVIM P   LA Q  +  KK++++  + V 
Sbjct: 386 TGSGKTIAFLLPMFRHILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVV 445

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G    + +   L+R     A II+ T     D +           ++  V++DE  R
Sbjct: 446 CVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADR 501

Query: 406 F---GVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
               G + Q +++          +M +   PRT+   +L    +SK  E   G + +   
Sbjct: 502 MFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRTM--EALARRILSKPVEVQVGGRSV--- 556

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS 517
                 +   +E+  +V+ E KK   +   +   +E      F    E  + L +    +
Sbjct: 557 ------VCSDVEQHVIVIEEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKA 610

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 +HG +   D++S+++ FKNG C+LL+AT+V   G+DV    +++  +  +    
Sbjct: 611 SYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSCPNHYED 670

Query: 575 QLHQLRGRVGR 585
            +H+  GR GR
Sbjct: 671 YVHRA-GRTGR 680


>gi|23014876|ref|ZP_00054672.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 592

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 150/352 (42%), Gaps = 54/352 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---------EAGG 322
            PT  QE+    +L+  +    +L  +    GSGKT+   +AMA  +          A  
Sbjct: 21  DPTDVQEA----VLEPGAMGRDLL--VSAQTGSGKTVAYGLAMADTLLGDAFTLEPAAEP 74

Query: 323 QAVIMAPIGILAQQ-HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+I+AP   LA Q H E    Y      +V  + G  P+A +R     +  G AHI++G
Sbjct: 75  LALIVAPTRELALQVHRELSWLYEHAGARVVSCVGGMDPRAEQRS----LGQG-AHIVVG 129

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPI 431
           T    +D ++   L        +L   DE    G ++ L+   +AT      LL +AT +
Sbjct: 130 TPGRLRDHLERGGLRINRLKAVVLDEADEMLDLGFREDLEFILEATPQERRTLLFSAT-L 188

Query: 432 PRTLVLTS------LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           P  +V  +         I +S  T+  A  +  + V +  N I+  +  L +   E   A
Sbjct: 189 PHGIVAMAKRYQRNAWRIAVSAGTQGHADIE-YRAVRVAPNEIEHAVVNL-LRYFESPTA 246

Query: 486 YWICPQIEEKKESNFRSVVERFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              C         N R  V    + L E   +++A+  G +   ++ + + + ++G  ++
Sbjct: 247 MVFC---------NTRDSVRHLQAILLERGFAAVAL-SGELGQNERNNALQALRDGRARV 296

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILL 595
            +AT V   GID+ +  ++I  +AE    AQ  Q R GR GR  +    +LL
Sbjct: 297 CVATDVAARGIDLPNLGLVI--HAELPQNAQTLQHRSGRTGRAGKKGVSVLL 346


>gi|297736780|emb|CBI25981.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 137/313 (43%), Gaps = 50/313 (15%)

Query: 302 VGSGKTLVALIAM-------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI            V+ G   +++AP   LA Q  +   K+ +++++    
Sbjct: 37  TGSGKTLGYLIPAFILLRRRRNNVQNGPTVMVLAPTRELATQIQDETIKFGRSSRVSCAC 96

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRFGVQ 409
           + G   +  + K L+R     A +++ T     D ++  K+      L+++DE  R    
Sbjct: 97  LYGGTSRNAQLKELDR----GADVVVATPGRLNDILESKKIDLGQISLLVLDEADR---- 148

Query: 410 QRLKLTQKATAPHVLLMTATPIPR--TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               +      P +  +     PR  TL+ T+    ++ KI    AG   +  V + I  
Sbjct: 149 ----MLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKI----AGDLLVNPVQVNIGS 200

Query: 468 IDE------VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS---LHEHFTSSI 518
           +DE      + + ++VV    K+      QI   +E   + ++  F S   L +    SI
Sbjct: 201 VDELAANKAITQYVEVVSPPEKQRR--LEQILRSQERGSKVII--FCSTKKLCDQLARSI 256

Query: 519 ------AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                 A+IHG  S ++++ V++ F++G   +L+AT V   G+D+ D  ++I  +     
Sbjct: 257 GRNFGAAVIHGDKSQVERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGI 316

Query: 573 LAQLHQLRGRVGR 585
              +H++ GR GR
Sbjct: 317 EDYVHRI-GRTGR 328


>gi|222086115|ref|YP_002544647.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84]
 gi|221723563|gb|ACM26719.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84]
          Length = 506

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 152/359 (42%), Gaps = 42/359 (11%)

Query: 261 IAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++QK+L  +      +PT  Q  AI   LQ    +  +  I Q   G+GKT   ++ M  
Sbjct: 9   LSQKVLSAVTDAGYTTPTPIQAGAIPFALQ----RRDICGIAQ--TGTGKTASFVLPMLT 62

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q  E  +KY +N ++ + ++ G +    + + LER
Sbjct: 63  LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNIALLIGGVSFEEQDRKLER 122

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
                A ++I T     D  +  KL++  V+    F + +  ++      P +  + A  
Sbjct: 123 ----GADVLICTPGRLLDHFERGKLLMSAVEI---FVIDEADRMLDMGFIPDIERI-AKL 174

Query: 431 IP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK--- 484
           IP   +TL  ++    +I K+ ++         V  P +    V +R   V S GK    
Sbjct: 175 IPFTRQTLFFSATMPAEIQKLADRFLQNPERVEVSAPASTAKTVTQRF--VASHGKDYEK 232

Query: 485 ----AYWICPQIEEKKESNFRS----VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
                  I  Q + K    F +    V + F SL  H   S+  +HG M    + +++ +
Sbjct: 233 RAALRDLIRAQTDLKNAIIFCNRKVDVADLFRSLQRH-GFSVGALHGDMDQRSRTTMLQN 291

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           F++G  +LL+A+ V   G+D+ D   +   +        +H++ GR GR     +   L
Sbjct: 292 FRDGQIQLLVASDVAARGLDLPDVGHVFNFDVPIHSEDYVHRI-GRTGRAGRSGAAFTL 349


>gi|195385378|ref|XP_002051383.1| GJ15436 [Drosophila virilis]
 gi|194147840|gb|EDW63538.1| GJ15436 [Drosophila virilis]
          Length = 403

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 122/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q    +    +  ++   
Sbjct: 71  IAQAQSGTGKTATFSIAILQQIDTSMRECQALILAPTRELATQIQRVVMALGEYMKVHSH 130

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-------QYYKL-ILVIVDEQHR 405
              G      R  A  RI     H+++GT     D I       Q  KL +L   DE   
Sbjct: 131 ACIGGTNV--REDA--RILESGCHVVVGTPGRVYDMINRKVLRTQSIKLFVLDEADEMLS 186

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + +++   K   P   V+L++AT  P  L ++            +   R+P+    I
Sbjct: 187 RGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVS------------RCFMREPVS---I 231

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      K+  W    + +  ++          N R  V++      +
Sbjct: 232 LVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSN 291

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   D+E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 292 HNFTVSAMHGDMDQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 342


>gi|126325503|ref|XP_001378186.1| PREDICTED: similar to helicase like protein 2 [Monodelphis
           domestica]
          Length = 829

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 84/408 (20%), Positives = 172/408 (42%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    +RL  +    G   +      F+K   IP+   G            
Sbjct: 296 KSDEDDWSKPLPPSDRLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 350

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 351 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 404

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + +   G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 405 LSQIYTDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 464

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 465 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 520

Query: 407 -GVQQRLK-LTQKATAP-----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
            G + +++ + ++ T P     H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 521 MGFEPQIRRIVEQDTMPQKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 579

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 580 NITQKVVWVEEADKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 632

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 633 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 680


>gi|315172964|gb|EFU16981.1| primosomal protein [Enterococcus faecalis TX1346]
          Length = 810

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+  +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QRFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 405


>gi|229505875|ref|ZP_04395384.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229356226|gb|EEO21144.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
          Length = 416

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 116/271 (42%), Gaps = 25/271 (9%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E +        +    + G
Sbjct: 54  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCG 113

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +  ++ AL        +I++ T      L Q  ++  ++  +++DE  R        
Sbjct: 114 GVDKTEQQNALAE----NPNILVATTGRLFDLTQSGLRLNRVTTLVLDEADR-------- 161

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 162 LLDMGFWPQVQALASQTAGVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAV 221

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +     ++HG  S
Sbjct: 222 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKS 281

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             ++E+ +  FKNGT ++LIAT ++  GI +
Sbjct: 282 QSEREAALAEFKNGTTQVLIATDLLARGIHI 312


>gi|229510271|ref|ZP_04399751.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229517598|ref|ZP_04407043.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229605408|ref|YP_002876112.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|229345634|gb|EEO10607.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229352716|gb|EEO17656.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229371894|gb|ACQ62316.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
          Length = 416

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 116/271 (42%), Gaps = 25/271 (9%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E +        +    + G
Sbjct: 54  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCG 113

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +  ++ AL        +I++ T      L Q  ++  ++  +++DE  R        
Sbjct: 114 GVDKTEQQNALAE----NPNILVATTGRLFDLTQSGLRLNRVTTLVLDEADR-------- 161

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 162 LLDMGFWPQVQALASQTAGVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAV 221

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +     ++HG  S
Sbjct: 222 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKS 281

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             ++E+ +  FKNGT ++LIAT ++  GI +
Sbjct: 282 QSEREAALAEFKNGTTQVLIATDLLARGIHI 312


>gi|260459532|ref|ZP_05807787.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259035086|gb|EEW36342.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 477

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 144/334 (43%), Gaps = 51/334 (15%)

Query: 302 VGSGKT-------LVALIAMAAAVEA-GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT       L  +IA+     A   +A+I+AP   LA Q  + IK   +   +   
Sbjct: 66  TGSGKTAAFALPILSKIIALGTKRRAKTTRALILAPTRELAVQIEDTIKILAKGAHVSTA 125

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
           ++ G +    R   ++++A G   I+I T     D ++   LIL     +++DE  R   
Sbjct: 126 LVLGGV---SRFSQVKKVAPG-VDILIATPGRLTDLVREGDLILSDTKWLVLDEGDRMLD 181

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G    +K   KATAP     L +AT +P  +   + G +           + P++  + 
Sbjct: 182 MGFINDVKRIAKATAPDRQTALFSAT-MPDEIAELAKGLL-----------KNPVRIEVS 229

Query: 464 P-INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV---------ERFNSLHEH 513
           P      E+++   VV +  K+   +   +    ++  +SV+         +R     E 
Sbjct: 230 PQSTAAAEIVQ--GVVFARTKQKRQVLSTM--LADAAMKSVIIFSRTKHGADRVTKDLER 285

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                A+IHG  S   ++  ++ F++G+ ++L+AT +   GIDV   S ++  +      
Sbjct: 286 DGFKAAVIHGNKSQNARQKALNDFRDGSVRILVATDIAARGIDVPGISHVVNFDLPDEAE 345

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           + +H++ GR GR       I L  P  S+NS  R
Sbjct: 346 SYVHRI-GRTGRNGMDGIAITLCDP--SENSKLR 376


>gi|241747700|ref|XP_002414349.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215508203|gb|EEC17657.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 519

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 143/340 (42%), Gaps = 46/340 (13%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQ----HYEFIKKYTQNTQ 349
            GSGKTL  ++  A  +        + G   V++AP   L QQ     YE+     +   
Sbjct: 140 TGSGKTLAYVLPAAIHMSDQPQPERDEGPIGVVLAPTRELVQQISQVAYEWCGGAFRLKG 199

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQH 404
             V       PQ  R         G AHI I T     D     +I   +   +++DE  
Sbjct: 200 APVYGGVSKGPQIAR-------LQGGAHICIATPGRLLDILETGAINLLRCSYLVLDEAD 252

Query: 405 RF---GVQQRLKLTQKATAP--HVLLMTATPIP---RTLVLTSLGD-IDISKITEKPAGR 455
           R    G + +++     T P    ++ +AT  P   R L    L D + I+  +E     
Sbjct: 253 RMLDMGFEPQIRKIVDQTRPDRQTVMWSAT-WPSEVRDLAEEFLTDHVQITVGSEDLCAN 311

Query: 456 KPIKTVI---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             I+ V+       + ++++E L+ + +EG +   I    + +       VV    +L++
Sbjct: 312 HNIRQVVHVCQGFEKEEKLLETLREINAEGDQRTLIFVATKAR-------VVTIVQNLYK 364

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++A  HG +S   ++  +D F++G   +L+AT V   G+DV D   +I  +     
Sbjct: 365 NGFRAVAT-HGDLSQNKRDIALDRFRSGKTPILVATDVAARGLDVSDIKYVINYDYPDTS 423

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            + +H++ GR GR     + I L+ P  +  +   +SVL+
Sbjct: 424 ESYVHRI-GRTGRSNRSGTAITLFTPDNAGQAKQLVSVLQ 462


>gi|165933600|ref|YP_001650389.1| ATP-dependent RNA helicase [Rickettsia rickettsii str. Iowa]
 gi|165908687|gb|ABY72983.1| ATP-dependent RNA helicase [Rickettsia rickettsii str. Iowa]
          Length = 414

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 139/313 (44%), Gaps = 33/313 (10%)

Query: 302 VGSGKTLVALIAMAAA-VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGKTL  L+ +  + ++    A+I+ P   LA Q +  + K T + +I   ++ G  P
Sbjct: 49  TGSGKTLAYLLPLIDSFIKNKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEP 108

Query: 361 QAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRL 412
              +   L++       +IIGT       L + S++  ++ + ++DE  R    G++++L
Sbjct: 109 MPKQFMQLKK----NPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQL 164

Query: 413 KLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +   K       VL+ +AT +P+ ++  S   ++            P++  +   N+   
Sbjct: 165 EEINKFLPEKRQVLMFSAT-MPKHIIAVSQKYLN-----------NPVRITVGATNKAAA 212

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRM 525
            I++  + +S+ +K   +  Q+  ++ S       +   ++   + ++   +   IHG +
Sbjct: 213 EIKQESMHVSDKEKFSALTKQLGHREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDL 272

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S   +E V+ SF+    ++++AT V   G+D+     +I  +        LH++ GR GR
Sbjct: 273 SQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRI-GRTGR 331

Query: 586 GEEISSCILLYHP 598
                  +    P
Sbjct: 332 AGATGHALSFISP 344


>gi|146184027|ref|XP_001027635.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|146143373|gb|EAS07393.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 713

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 138/318 (43%), Gaps = 52/318 (16%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL  L+     + A        G   +++AP   LA Q     +++ +++++ 
Sbjct: 145 AETGSGKTLSFLLPSIVHINAQPTVKKGDGPIVLVLAPTRELAMQIERESERFGKSSKLK 204

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR- 405
              I G   +  +R  L++       ++I T       L  ++    ++  +++DE  R 
Sbjct: 205 CACIYGGADKYSQRALLQQ----GVDVVIATPGRLIDFLESETTTLRRVTYLVLDEADRM 260

Query: 406 ----FGVQQRLKLTQKATAPHVLLMTATPIPR------------TLVLTSLGDIDISKIT 449
               F +Q R  L Q       L+ +AT  P+            T V   +G  +++ I 
Sbjct: 261 LDMGFEIQIRKILGQIRPDRQTLMFSAT-WPKNVQNLAQDYCKNTPVYVQIGKHELA-IN 318

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV-VERFN 508
           E+    K I  V     +I+++I++L  +  + K    I  Q ++  ES  R +  E F 
Sbjct: 319 ER---IKQIVYVTDQSKKINQLIKQLDCLTQKDK--VLIFAQTKKGCESMSRILNKEGFK 373

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L          IHG  +  D++ VM+ FK+G C++LIAT V   G+DV D S +   + 
Sbjct: 374 CL---------AIHGDKAQKDRDYVMNKFKSGECRILIATDVASRGLDVKDVSHVFNYDF 424

Query: 569 EHFGLAQLHQLRGRVGRG 586
                  +H++ GR GR 
Sbjct: 425 PKVMEDYVHRI-GRTGRA 441


>gi|254496850|ref|ZP_05109700.1| ATP-dependent RNA helicase DbpA [Legionella drancourtii LLAP12]
 gi|254353922|gb|EET12607.1| ATP-dependent RNA helicase DbpA [Legionella drancourtii LLAP12]
          Length = 475

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 142/313 (45%), Gaps = 43/313 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +   ++      QA+++ P   LA+Q  + I++  +   N ++
Sbjct: 59  IAQAKTGSGKTAAFGLTLLNHLKVEFFATQALVLCPTRELAEQVSQAIRRLARLLPNVKV 118

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ-----DSIQYYKLILVIVDEQHR 405
           +   ++G MP   +   L+ + HG AHI++GT    Q     +S+    L  +++DE  R
Sbjct: 119 LN--LSGGMPFTPQ---LDSLRHG-AHIVVGTPGRIQKHLDKNSLSLKHLNTLVLDEADR 172

Query: 406 F---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
               G    +K          ++ T     +TL+ ++    +I  + ++   R P K + 
Sbjct: 173 MLDMGFFDEIK---------NIIRTCPTTRQTLLFSATYPAEIKNLADEFM-RDPQK-IT 221

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQI--EEKKESN--FRSVVERFNSLHEHFTS-- 516
           I  N  +  IE+    ++  K  + +   +    K  S   F +  E+ N +    T   
Sbjct: 222 IEENHDELNIEQHFYEVNNAKDKFALLNDLLRHHKPTSTLIFCNTKEQTNQVSRQLTQAG 281

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE-HFGLA 574
            S  +++G M  ID++  M  F N +C +L+AT V   G+D+ +   ++  N E  F LA
Sbjct: 282 FSATMLNGDMEQIDRDLAMIRFGNKSCSILVATDVAARGLDIKELPAVV--NYELAFDLA 339

Query: 575 -QLHQLRGRVGRG 586
             +H++ GR GR 
Sbjct: 340 VHIHRI-GRTGRA 351


>gi|50303057|ref|XP_451466.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660682|sp|Q6CX73|FAL1_KLULA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49640597|emb|CAH03054.1| KLLA0A10659p [Kluyveromyces lactis]
          Length = 398

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 150/349 (42%), Gaps = 53/349 (15%)

Query: 265 ILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +LR I F     P+  Q  AI  I+   S K+    I Q   G+GKT    I +  A+++
Sbjct: 34  LLRGIYFYGFEYPSSIQSRAISQII---SGKDV---IAQAQSGTGKTATFTIGLLQAIDS 87

Query: 321 GG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                QA++++P   LA Q    I        +     TG        K + +       
Sbjct: 88  KSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK----NCQ 143

Query: 378 IIIGTHALFQDSIQYYKL------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           ++ GT     D I+   L      ILV+ +     G  + L   Q+    + +     P 
Sbjct: 144 VVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLG--ETLGFKQQI---YDIFTKLPPT 198

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV-IERLKVVLSEGKKAYWICP 490
            + +V+++    DI +IT+K     P+K ++    + DE+ ++ +K    + +K  W   
Sbjct: 199 IQVVVVSATMSKDILEITKKFMS-DPVKILV----KRDEISLDVIKQYYVDVEKEEWKFD 253

Query: 491 QIEEKKES----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            + +  +S          N R  V+  +        S++ +HG M   +++ VM+ F++G
Sbjct: 254 TLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSG 313

Query: 541 TCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
             ++LI+T V   GIDV   S++I     +N E++    +H++ GR GR
Sbjct: 314 KARVLISTDVWARGIDVQQISLVINYDIPDNLENY----IHRI-GRSGR 357


>gi|297807481|ref|XP_002871624.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317461|gb|EFH47883.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 713

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 136/312 (43%), Gaps = 48/312 (15%)

Query: 302 VGSGKTLVALIAMAAAVE-------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI     ++        G   ++++P   LA Q      K+ ++++I    
Sbjct: 275 TGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCAC 334

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---- 405
           + G  P+  + K +ER       I++ T     D ++  ++ L     +++DE  R    
Sbjct: 335 LYGGAPKGPQLKEIER----GVDIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDM 390

Query: 406 -FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            F  Q R  + +  T    L+ TAT  P+ +      +L +   ++I  + E  A +   
Sbjct: 391 GFEPQIRKIVNEVPTKRQTLMYTAT-WPKEVRKIAADLLVNPAQVNIGNVDELVANKSIT 449

Query: 459 KT--VIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           +T  V+ P+    E   RL+ +L     G K    C        S  R   +   +L   
Sbjct: 450 QTIEVLAPM----EKHSRLEQILRSQEPGSKIIIFC--------STKRMCDQLARNLTRT 497

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F +  A IHG  S  +++ V++ F++G   +L+AT V   G+DV D  +++  +  +   
Sbjct: 498 FGA--AAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVE 555

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 556 DYVHRI-GRTGR 566


>gi|213408863|ref|XP_002175202.1| ATP-dependent RNA helicase dbp3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212003249|gb|EEB08909.1| ATP-dependent RNA helicase dbp3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 554

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 139/330 (42%), Gaps = 71/330 (21%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           + ++++P   LA Q YE ++       + V  + G  P+  + +A       +A +IIGT
Sbjct: 214 RVLVVSPTRELAIQTYENMRDLLAPLGLNVVAVYGGAPKFEQARAAR-----EASVIIGT 268

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIP-- 432
                D     ++   K+  +++DE  R    G +Q ++           +M+ATP P  
Sbjct: 269 PGRLLDLINDGAVNCSKVGYLVLDEADRMLDTGFEQDIRN----------IMSATPNPLA 318

Query: 433 -----------------RTLVLTSLGD-IDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                            R L  T L D + I+  +++ A    I  ++  I+   +   R
Sbjct: 319 GGQRQTVFFSATWPESVRELASTFLKDPVKITIGSDELAASHNITQIVEVIDDPRQKEYR 378

Query: 475 LKVVLSE-----GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           L+ +L +     GK    +   + +K+ +         N+L   F   +  IHG +S   
Sbjct: 379 LEALLRKHLKEIGKNGKVLVFALYKKEAARVE------NTLRRKF--DVVGIHGDLSQAA 430

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII-------IENAEHFGLAQLHQLRGR 582
           +   +DSFK+G C LL+AT V   G+D+    ++I       IE+        +H++ GR
Sbjct: 431 RIQALDSFKSGRCNLLVATDVAARGLDIPQVQLVINLTFPLTIED-------YIHRI-GR 482

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GR     + I L+ P    ++   ++VL+
Sbjct: 483 TGRANTKGTSITLFTPQDKGHAGELINVLR 512


>gi|66800751|ref|XP_629301.1| hypothetical protein DDB_G0293064 [Dictyostelium discoideum AX4]
 gi|60462682|gb|EAL60884.1| hypothetical protein DDB_G0293064 [Dictyostelium discoideum AX4]
          Length = 573

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 146/360 (40%), Gaps = 53/360 (14%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     + A        G   +++AP   LA Q  +  ++Y +   I + 
Sbjct: 185 TGSGKTLSFILPAIEHILAQPRQSYYPGPSVLVVAPTRELANQINQEAEQYLRLVNIEIA 244

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  ++  L R    +  I++GT     D ++   L L     ++VDE  R   
Sbjct: 245 TIYGGAPRRSQQLQLSR----RPKIVVGTPGRIIDFMESGDLSLKNISFLVVDEADRLME 300

Query: 407 -GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +Q++             L   AT P  +   A    RT +   +G    S++T    
Sbjct: 301 MGFEQQIDGIFNSIRPDRQVLYWSATWPKKVSSFAEKHIRTPIRLQIGS---SQLTANKN 357

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             +  K V    +++D +++ L  + S  +KA  +   + +K     +  ++        
Sbjct: 358 ISQKFKIVPTDADKVDALMDTLGEIYSADEKAQTLIFTMTKKGADTLKHYIQSNGD---- 413

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               I  +HG +    +E ++  FKN    +++AT V   G+D+   S +I  +      
Sbjct: 414 -NVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATDVASRGLDIKGISHVINFSLPSDCE 472

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
             +H++ GR GR   + +     H  LS NS   + ++ +          +L QR E E+
Sbjct: 473 TYVHRI-GRTGRAGALGTS----HSILSNNSLDDMELVGDL--------TNLLQRSEQEV 519


>gi|325295336|ref|YP_004281850.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065784|gb|ADY73791.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 425

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 167/391 (42%), Gaps = 53/391 (13%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAV 318
           QK L  + F SPT  Q+ AI   L+          + Q   G+GKT    + +I    + 
Sbjct: 23  QKSLEEMGFESPTPIQKEAIPLALEGYDI------VGQAQTGTGKTAAFGIPIIENINSR 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           E G +A+++ P   LA Q    +    +N  +    I G +    +   L+R   G+  I
Sbjct: 77  ERGVKAIVLTPTRELAIQVAHELSLIGKNKGVSAYPIYGGVSIERQANILKR---GRNQI 133

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGV----QQRLKLTQKATAPHVLLMTATPIPR- 433
           ++GT    +D I    L L    ++ RF V     Q L +        +L  + TP  + 
Sbjct: 134 VVGTPGRVKDLISRGLLKL----DRVRFAVLDEADQMLDMGFIEDIEEIL--SKTPREKQ 187

Query: 434 TLVLTSLGDIDISKITEK--PAGRKPIK---TVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TL+ ++    +I K+ +    +G K IK    +I P     +V +R+  V SE K     
Sbjct: 188 TLLFSATMPYEIRKLIDNYLKSGYKTIKVGKNLITP-----KVHQRIIFVKSEDKLKALE 242

Query: 489 CPQIEEKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
               E +  S        R   E    L +   ++ AI HG +S   +E+VM +FK G  
Sbjct: 243 KLLKEHQGTSTIVFVKTKRDAAEIEKELQKRSINARAI-HGDLSQRQRENVMKAFKEGKV 301

Query: 543 KLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           K L+AT V   GID+ D  ++I     EN E +    +H++ GR GR     + I L   
Sbjct: 302 KTLVATDVAARGIDIKDVGLVINYELPENPESY----VHRI-GRTGRAGREGTAISLVAD 356

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEE--DLKQ 627
              +  Y R+  LK+ +     A +  DLKQ
Sbjct: 357 NEKRRIY-RIKGLKHIKPEKFKANDLRDLKQ 386


>gi|323705508|ref|ZP_08117083.1| primosomal protein N' [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535410|gb|EGB25186.1| primosomal protein N' [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 731

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 9/140 (6%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           PTK QE  I ++ + + +      +L G  GSGKT V L  +   +E G +A+++ P I 
Sbjct: 193 PTKEQEQVISEVKKIIGKNIFEKYLLFGVTGSGKTEVYLQLIEKCIELGKEAIVLVPEIS 252

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-HALFQDSI 390
           +  Q    F+ ++      +V ++   +    R     +I +G   I++G  +A+F    
Sbjct: 253 LTPQTIERFVSRFGN----LVAVLHSGLSDGERFDEWRKIVNGDVKIVVGVRNAVFA--- 305

Query: 391 QYYKLILVIVDEQHRFGVQQ 410
            +  L L+I+DE+H    +Q
Sbjct: 306 PFSNLGLIIIDEEHETTYKQ 325


>gi|257076731|ref|ZP_05571092.1| ATP-dependent RNA helicase [Ferroplasma acidarmanus fer1]
          Length = 901

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 147/366 (40%), Gaps = 69/366 (18%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           + + + RN   +PT++Q+ AI +IL   S +N +L       GSGKT  AL+ +   +  
Sbjct: 16  LKESLARNGILNPTEAQKMAIPEIL---SGENTLL---ISPTGSGKTEAALVPLLNKIYL 69

Query: 321 GGQAVI----MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                I    + P+  L +     +  Y +   I V++   ++ QA R +    I+   A
Sbjct: 70  EKPQSIALLYITPLRALNRDMLSRVFDYCRTLDIRVQVRHSDISQAERNE----ISRNPA 125

Query: 377 HIIIGTHALFQ------------DSIQYYKLILVIVDEQHRFGVQQR------------- 411
            I+I T    Q             +I+Y     VIVDE H     +R             
Sbjct: 126 QILITTPESLQLLMMGKRLREHIKNIKY-----VIVDEVHEMAQNERGSQFAIAMERLKV 180

Query: 412 -------LKLTQKATAPHVLLMTATPIPRTLVLTSLGD--IDISKITEKPAGRKPIKTVI 462
                  + L+  A     L +  +P  +  +L  + D  +DI K+   P     I  ++
Sbjct: 181 LAGNFQVIGLSATAKNEDELSLFISPSSQCRILKPVIDKKMDI-KVILPPPSNDDIANIM 239

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAI 520
              N+    IE++  ++ E K               N R V E  +     +     I +
Sbjct: 240 ACDNQYAGSIEKIHSIVEENKGTIVFV---------NRRYVAEDISFRLRLWLKDPDIEV 290

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +S   +E+    FK    K LI T+ +E+GIDV  A +++  N+      Q++++ 
Sbjct: 291 HHGSLSRETRETAEMDFKENRVKALICTSSLELGIDVGSADMVVQFNSPR----QINKMV 346

Query: 581 GRVGRG 586
            R+GR 
Sbjct: 347 QRIGRA 352


>gi|157828874|ref|YP_001495116.1| ATP-dependent RNA helicase RhlE [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801355|gb|ABV76608.1| ATP-dependent RNA helicase RhlE [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 410

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 139/313 (44%), Gaps = 33/313 (10%)

Query: 302 VGSGKTLVALIAMAAA-VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGKTL  L+ +  + ++    A+I+ P   LA Q +  + K T + +I   ++ G  P
Sbjct: 45  TGSGKTLAYLLPLIDSFIKNKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEP 104

Query: 361 QAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRL 412
              +   L++       +IIGT       L + S++  ++ + ++DE  R    G++++L
Sbjct: 105 MPKQFMQLKK----NPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQL 160

Query: 413 KLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +   K       VL+ +AT +P+ ++  S   ++            P++  +   N+   
Sbjct: 161 EEINKFLPEKRQVLMFSAT-MPKHIIAVSQKYLN-----------NPVRITVGATNKAAA 208

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRM 525
            I++  + +S+ +K   +  Q+  ++ S       +   ++   + ++   +   IHG +
Sbjct: 209 EIKQESMHVSDKEKFSALTKQLGHREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDL 268

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S   +E V+ SF+    ++++AT V   G+D+     +I  +        LH++ GR GR
Sbjct: 269 SQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRI-GRTGR 327

Query: 586 GEEISSCILLYHP 598
                  +    P
Sbjct: 328 AGATGHALSFISP 340


>gi|311032368|ref|ZP_07710458.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. m3-13]
          Length = 481

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 136/321 (42%), Gaps = 41/321 (12%)

Query: 264 KILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---E 319
           K L+++ +  PT  QE  I   L           I++   GSGKT    + +   V   E
Sbjct: 16  KALKSLNYLKPTNVQEEVIPKALAKSDI------IVKSQTGSGKTAAFAVPLCDLVHWEE 69

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              QA+++ P   LA Q  + I    +  ++    I G   Q+ +R+ LE     ++HI+
Sbjct: 70  NKPQALVLTPTRELAAQVKDDITNIGRYKRVKATAIYGK--QSFQRQKLE--LKQKSHIV 125

Query: 380 IGTHALFQDSIQYYKL------ILVI--VDEQHRFG-VQQRLKLTQKATAPHVLLMTATP 430
           +GT     D ++   L       LVI   DE    G + Q   + Q      V ++ +  
Sbjct: 126 VGTPGRVLDHLEKGTLDVSRLEYLVIDEADEMLNMGFIDQVESIIQMLPKSRVTMLFSAT 185

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           +P           DI +++ +     P+   I       + IE +   + EG+K + +  
Sbjct: 186 LPE----------DIKQLSNQYM-TNPVFIEIESGGLTTDRIEHIWYEVGEGEKKFLLLK 234

Query: 491 QIE--EKKESN--FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCK 543
            I   E  +S   F +  E  + +H +   +      +HG +   D+ SVM++FK G  +
Sbjct: 235 DITVVENPDSCIVFCATQEEVDKVHRNLHRAGYPCGKLHGGLVQEDRFSVMNAFKRGEFR 294

Query: 544 LLIATTVIEVGIDVVDASIII 564
            LIAT V   GID+ D S++I
Sbjct: 295 YLIATDVASRGIDIEDISLVI 315


>gi|310790877|gb|EFQ26410.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 396

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 149/362 (41%), Gaps = 85/362 (23%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR------------------------ 296
           +A K L ++P    +S      D   DM+ K+ +LR                        
Sbjct: 1   MADKGLEDVPEGQIESNYDETVDSFDDMNLKSELLRGVYAYGFERPSAIQQRAIMPVIKG 60

Query: 297 ---ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +        I
Sbjct: 61  HDVIAQAQSGTGKTATFSISVLQKIDTNVKACQALILAPTRELAQQIQKVVVAIGDFMNI 120

Query: 351 IVEIITGNMPQAHRRKALERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                 G        KAL+          G+ H +I    L  DS++ +  +L   DE  
Sbjct: 121 ECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDSMKMF--VLDEADEML 178

Query: 405 RFGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
             G  +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P++ 
Sbjct: 179 SRGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPVRI 224

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE--------------- 505
           ++    + DE+         EG K ++I  + EE K      + E               
Sbjct: 225 LV----KKDELT-------LEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRR 273

Query: 506 RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + + L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S+
Sbjct: 274 KVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSL 333

Query: 563 II 564
           +I
Sbjct: 334 VI 335


>gi|260912790|ref|ZP_05919276.1| DNA replication factor Y [Pasteurella dagmatis ATCC 43325]
 gi|260633168|gb|EEX51333.1| DNA replication factor Y [Pasteurella dagmatis ATCC 43325]
          Length = 737

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 21/147 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   ++ G Q +++ P IG+  Q     ++++     ++++++
Sbjct: 226 LLDGVTGSGKTEIYLQFIEEVLKKGQQVLVLVPEIGLTPQT----VQRFRMRFNVVIDVL 281

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
             N+    R    +R   GQ+ I+IGT  ALF    Q+  L L+++DE+H    +Q+   
Sbjct: 282 HSNVNDTQRLNVWQRARTGQSAIVIGTRSALF---TQFSDLGLIVIDEEHDASFKQQDSF 338

Query: 412 --------LKLTQKATAPHVLLMTATP 430
                   L L ++   P VL+ +ATP
Sbjct: 339 RYHARDLSLVLAKQLNIP-VLMGSATP 364


>gi|190891857|ref|YP_001978399.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
 gi|190697136|gb|ACE91221.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
          Length = 651

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 127/313 (40%), Gaps = 40/313 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  +  G +         A+++AP   LA Q    ++   + 
Sbjct: 41  LVSAQTGSGKTVAFGLALAPTLLEGSERFGNAGAPLALVIAPTRELALQVKRELEWLYEM 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399
           T  ++    G M     R+ALER     AHI++GT     D I+   L        +L  
Sbjct: 101 TGAVIASCVGGMDIRSERRALER----GAHIVVGTPGRLCDHIRRRALDMSDLKAAVLDE 156

Query: 400 VDEQHRFGVQQRLK-LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGRKP 457
            DE    G ++ L+ +   A      LM +  +P  +  L      D  +I+     ++ 
Sbjct: 157 ADEMLDLGFREDLEFILDSAPDERRTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQH 216

Query: 458 IKT-----VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           +       ++ P +R + +I  L+    E   A   C         + R+ V    +   
Sbjct: 217 VDIEYRALMVAPSDRENAIINVLRYY--EATNAIVFC---------STRAAVNHLTARFN 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   S+  + G ++  ++   + + ++G  ++ IAT V   GID+    ++I  +     
Sbjct: 266 NRNFSVVALSGELTQNERSHALQAMRDGRARVCIATDVAARGIDLPGLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGR 585
              LH+  GR GR
Sbjct: 326 ETLLHR-SGRTGR 337


>gi|168490848|ref|ZP_02714991.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC0288-04]
 gi|183574625|gb|EDT95153.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC0288-04]
          Length = 445

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 153/352 (43%), Gaps = 38/352 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + F+ PT+ Q+  I  +L       R L + +   GSGKT   L+ +   ++     
Sbjct: 16  LKELKFTTPTEVQDKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDEASDS 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHII 379
            QAVI AP   LA Q Y+  ++ + ++ + V ++   G   +A   + +E++   Q HI+
Sbjct: 70  VQAVITAPSRELATQIYQVSRQISAHSDVEVRVVNYVGGTDKA---RQIEKLESNQPHIV 126

Query: 380 IGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTAT 429
           IGT     D ++      +K    +VDE         L+   K           ++ +AT
Sbjct: 127 IGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGCLPKDLQFMVFSAT 186

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            IP+ L         + K    P   K IKT  +  + ID  +   K    +  + Y + 
Sbjct: 187 -IPQKLQPF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-HDKNAQIYQLT 237

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN   + ++
Sbjct: 238 QLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 298 ATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|157422943|gb|AAI53508.1| Eif4a1b protein [Danio rerio]
          Length = 429

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++    G QA+++AP   LAQQ  + I            
Sbjct: 96  IAQAQSGTGKTATFAISILQQIDIELKGTQALVLAPTRELAQQIQKVILALGDYMGATCH 155

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S +Y K+ +L   DE   
Sbjct: 156 ACIGG---TNVRNEVQKLQAEAPHIVVGTPGRVYDMLNRKFLSSKYIKMFVLDEADEMLS 212

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK +T+  V+L++AT     L +T+               R+P++   I
Sbjct: 213 RGFKDQIYEIFQKLSTSIQVVLLSATMPAEVLDVTT------------KFMREPVR---I 257

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      +K  W    + +  E+          N R  V+        
Sbjct: 258 LVKKEELTLEGIRQFYINVEKEEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 317

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   D++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 318 RDFTVSALHGDMDQKDRDLIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 368


>gi|116629232|ref|YP_814404.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|116094814|gb|ABJ59966.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC
           33323]
          Length = 435

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 124/307 (40%), Gaps = 28/307 (9%)

Query: 302 VGSGKTLV-ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G+GKTL   L  M    E GG+ VI+ P   LA Q    +  Y +   +    + G   
Sbjct: 65  TGTGKTLAYGLPVMERIDEIGGRGVILEPTTELAIQTRNNLLPYAKALGLKTIALVG--- 121

Query: 361 QAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
             +R++ LER+   +  III T   F     ++ I+Y  +  +++DE        +L L 
Sbjct: 122 AGNRKRQLERLKKEKPEIIIATPGRFFDFLSENRIKYQDINALVIDEADDILEFAKLDLL 181

Query: 416 QK-----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
                  ++   +LL  A+    T     L +     +  +P  +  +K   + ++   +
Sbjct: 182 SSLGQNLSSTAQILLFGASESEVTKNAEDLFNHTFLLVDVRPEQKSEVKHYFLQVSNEYK 241

Query: 471 V--IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
           +  ++RL  +       ++   + E            RF  +  H  +  A++    S  
Sbjct: 242 MQFLQRLAKLDKFKGILFFDSTETEM-----------RFARIFSHSKTKFAVLSNETSKQ 290

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           ++E ++  FK G  K L AT +   G+D+ D S +I           LH+  GR GR  +
Sbjct: 291 NREKLLSDFKAGRIKFLFATDLAARGLDLPDVSYVINFEIPSEVNTYLHR-SGRTGRMNK 349

Query: 589 ISSCILL 595
             + + L
Sbjct: 350 SGTVVTL 356


>gi|298387706|ref|ZP_06997257.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_14]
 gi|298259562|gb|EFI02435.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_14]
          Length = 444

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 151/362 (41%), Gaps = 52/362 (14%)

Query: 260 KIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +I Q  L+N+   S    QE+A++   Q   +K+    IL    GSGKTL  L+ +   +
Sbjct: 6   EIIQSALQNLKIESLNPMQEAALE---QGTGRKDV---ILLSPTGSGKTLAYLLPLLLIL 59

Query: 319 EAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           +      Q +I+ P   LA Q     +  +  T        G  P A  +K+   IA  +
Sbjct: 60  KPNDDSVQVLILVPSRELALQIDTVFR--SMGTSWKTCCCYGGHPIAEEKKS---IAGNR 114

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             IIIGT     D +            LI+   D+   FG    +   +TQ       +L
Sbjct: 115 PAIIIGTPGRITDHLSKRNFDPETIETLIIDEFDKSLEFGFHDEMAEIITQLPGLKKRML 174

Query: 426 MTATP---IPRTLVLTSLGDID-ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           ++AT    IP+   L     +D + + TE+   R  +  V+ P    D++     ++ + 
Sbjct: 175 LSATDAEEIPQFTGLNRTVKLDFLPEATEEQENRLKLMKVLSPSK--DKIATLYNLLCTL 232

Query: 482 GKKAYWI-CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           G  +  + C         N R  V+R + L E    S    HG M   D+E  +  F+NG
Sbjct: 233 GSSSSIVFC---------NHRDAVDRVHKLLEDKKLSAERFHGGMEQPDRERALYKFRNG 283

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQLHQLRGRVGRGEEISSCILL 595
           +C +LI+T +   G+D+ +     IE+  H+ L     A  H+  GR  R +   +  L+
Sbjct: 284 SCHVLISTDLAARGLDIPE-----IEHIIHYHLPVNEEAFTHR-NGRTARWDATGTSYLI 337

Query: 596 YH 597
            H
Sbjct: 338 LH 339


>gi|254442721|ref|ZP_05056197.1| primosomal protein N', putative [Verrucomicrobiae bacterium DG1235]
 gi|198257029|gb|EDY81337.1| primosomal protein N', putative [Verrucomicrobiae bacterium DG1235]
          Length = 749

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 12/168 (7%)

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R  +  E+G   +VE    Q+I+ N      K Q + ++ I++ +     +  +L G  G
Sbjct: 190 RVAYDDELG---DVEYATNQEIVLN------KEQATCVQSIIESVRTGTFITHLLYGVTG 240

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           SGKT V + AM  A++AG   + + P + +  Q       ++T++      +   ++   
Sbjct: 241 SGKTEVYIAAMEEALKAGKSVLFLVPEVALTPQTVGRLRSRFTEHKDAHAVVWHSSLSDG 300

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            R  A   +A+G A +++G  +     +    L LVIVDE+H    +Q
Sbjct: 301 ERLDAWMALANGTARVVVGARSAVFAPLP--NLGLVIVDEEHEPAFKQ 346


>gi|223590190|sp|A5DAC8|DBP3_PICGU RecName: Full=ATP-dependent RNA helicase DBP3
 gi|190344457|gb|EDK36135.2| hypothetical protein PGUG_00233 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 534

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 124/290 (42%), Gaps = 46/290 (15%)

Query: 301 DVGSGKTLV----ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           + GSGKT      A+  +    + G + + ++P   LA Q Y+ +   T+N  +    I 
Sbjct: 174 ETGSGKTFAFGVPAINNIITDNKKGLRVLCISPTRELALQIYDNLTMLTKNCGLTCVAIY 233

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF----- 406
           G +P+  + KA++      A +++ T     D     ++    +  +++DE  R      
Sbjct: 234 GGVPKDQQIKAVK-----TASVVVATPGRLVDLLNDGAVDLSTIDYLVLDEADRMLEKGF 288

Query: 407 --------GV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
                   G   +QR  L   AT P  +   A       V  S+G+ D     E  A ++
Sbjct: 289 EEDIKNIIGCTNKQRQTLMFTATWPKEVRELAATFMNKAVKVSIGNRD-----ELAANKR 343

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER--FNSLHEHF 514
             +TV +   R D+    L+++   G     +   + +K+ +   +++ R  FN      
Sbjct: 344 ITQTVEVMDPR-DKERRLLQLLRQYGSDQKILVFALYKKEATRVEAMLRRSGFN------ 396

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +A IHG +S   + S +DSFK G   LL+AT V   G+D+ +  ++I
Sbjct: 397 ---VAAIHGDLSQQQRTSALDSFKRGDSNLLLATDVAARGLDIPNVKVVI 443


>gi|156938134|ref|YP_001435930.1| DEAD/DEAH box helicase [Ignicoccus hospitalis KIN4/I]
 gi|156567118|gb|ABU82523.1| DEAD/DEAH box helicase domain protein [Ignicoccus hospitalis
           KIN4/I]
          Length = 894

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 151/346 (43%), Gaps = 63/346 (18%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-----QAVI 326
           SPT  QE AI  ILQ          ++    GSGKT  AL+ +AA +   G     +A+ 
Sbjct: 22  SPTPIQEKAIPIILQGYHT------LITAPTGSGKTEAALLPVAARIIQKGSFGGLKALY 75

Query: 327 MAPIGILAQ----QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHGQA 376
           + P+  L +    +  E +++   N    V++  G+ P + R+K +E             
Sbjct: 76  ITPLRALNRDIGIRALELLREAGLN----VDVWHGDTPYSRRKKIIEHPPEVLVTTPESL 131

Query: 377 HIIIGTHALFQ--DSIQYYKLILVIVDEQHRFGVQQR--------LKLTQKATAPHVLLM 426
           +II+    + +  ++++Y     VIVDE H    ++R         +L+++A    +  +
Sbjct: 132 NIILANKEMLKHLNNVEY-----VIVDELHELIEEKRGAELTVALERLSERARVQRIG-V 185

Query: 427 TATPIPRTLVLTSLGD----IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +AT     L    LG     ID++  T K    KP   V +  +  + ++ ++K ++ + 
Sbjct: 186 SATISNVNLAKKFLGGGRFVIDVADETVK----KPEIKVYVE-DSFENMVSKVKEIIKKI 240

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                +         +N R   E     L E F   +A+ HG +S  ++E V    + G 
Sbjct: 241 DGTVLVF--------TNTRDTAEVLGKILKEEFGEEVAVHHGSLSKKEREGVERRARKGE 292

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            K+++AT+ +E+GID+     ++    +     ++  L  RVGR E
Sbjct: 293 LKVIVATSSLELGIDIGSVKHVV----QFASPRRVTNLVQRVGRAE 334


>gi|288799847|ref|ZP_06405306.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288333095|gb|EFC71574.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 445

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 153/349 (43%), Gaps = 58/349 (16%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIMAPI 330
           QE+ I  IL     K  +L + Q   G+GKT   L+ + + ++ GG        +IM+P 
Sbjct: 10  QEACIPAILN----KKDILGVAQ--TGTGKTAAYLLPVLSLLDNGGYPKDKINCIIMSPT 63

Query: 331 GILAQQHYEFIKKYTQNTQII--VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF-- 386
             LAQQ  + ++ ++   Q +  V +  GN    + ++ ++ +  G A +II T   F  
Sbjct: 64  RELAQQIDQAMQGFSYYLQEVSSVAVYGGNDGNRYDQE-IKSLKLG-ADVIIATPGRFIS 121

Query: 387 ---QDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHV--LLMTATPIPR--TLV 436
                +I    +   I+DE  R    G    +    K   PH   ++ +AT  P+  TL 
Sbjct: 122 HLSLGNIDTSGVSFFILDEADRMLDMGFYDDIMTIAKELPPHCQNIMFSATMPPKIETLA 181

Query: 437 LTSLGDIDISKIT-EKPAGR---------KPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
            T L + +  K+   KPA +         +P K  I+      + ++R  V++  GKK  
Sbjct: 182 RTILKNPETIKLAVSKPAEKIKQSAYVCYEPQKLKIVTSLFNADNLQR--VIIFSGKK-- 237

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                 ++ K+ N   + ++ NS           +H  +S  +++ VM  FK G   +L+
Sbjct: 238 ------DKVKDINKALLSKKINS---------GAMHSDLSQAERDEVMFKFKAGQIDVLV 282

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           AT ++  GID+ D  ++I  +  H     +H++ GR  R +     I L
Sbjct: 283 ATDIVSRGIDIDDIRMVINYDVPHDVEDYIHRI-GRTARADRDGKAITL 330


>gi|229522511|ref|ZP_04411927.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|229340496|gb|EEO05502.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
          Length = 416

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 118/278 (42%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  + +        +    + G
Sbjct: 54  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSDVLTHVGTPLGLNTLCLCG 113

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +A ++ AL        +I++ T      L Q  +   ++  +++DE  R        
Sbjct: 114 GVDKAEQQNALAE----NPNILVATTGRLFDLTQSGLSLNRVTTLVLDEADR-------- 161

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 162 LLDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAV 221

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +      +HG  S
Sbjct: 222 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKS 281

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             ++E+ +  FKNGT ++LIAT ++  GI +    ++I
Sbjct: 282 QSEREAALAEFKNGTTQVLIATDLLARGIHIEQLPVVI 319


>gi|21227489|ref|NP_633411.1| Hef nuclease [Methanosarcina mazei Go1]
 gi|20905864|gb|AAM31083.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina mazei
           Go1]
          Length = 864

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 16/140 (11%)

Query: 302 VGSGKTLVALIAMAAAVEA-GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G GKT++AL  +A+ ++  GG+A+I++P   L +QH  F KK     +  V   TG++ 
Sbjct: 47  TGLGKTIIALFVIASRLQRFGGKALILSPTKPLVEQHAAFFKKVMALPEEEVLAFTGSIS 106

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-FGVQQRLKL 414
            A R +  E     Q  +I+ T  + ++ I   ++ L     +  DE HR  G      +
Sbjct: 107 PAERERLWE-----QGKLIVSTPQVIENDILTRRISLENVSHITFDEAHRAVGNYAYTFI 161

Query: 415 TQK----ATAPHVLLMTATP 430
            +K    A  PHVL +TA+P
Sbjct: 162 AEKYFESAKNPHVLGITASP 181


>gi|327190854|gb|EGE57918.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
          Length = 651

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 127/313 (40%), Gaps = 40/313 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  +  G +         A+++AP   LA Q    ++   + 
Sbjct: 41  LVSAQTGSGKTVAFGLALAPTLLEGSERFGNAGAPLALVIAPTRELALQVKRELEWLYEM 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399
           T  ++    G M     R+ALER     AHI++GT     D I+   L        +L  
Sbjct: 101 TGAVIASCVGGMDIRSERRALER----GAHIVVGTPGRLCDHIRRRALDMSDLKAAVLDE 156

Query: 400 VDEQHRFGVQQRLK-LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGRKP 457
            DE    G ++ L+ +   A      LM +  +P  +  L      D  +I+     ++ 
Sbjct: 157 ADEMLDLGFREDLEFILDSAPDERRTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQH 216

Query: 458 IKT-----VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           +       ++ P +R + +I  L+    E   A   C         + R+ V    +   
Sbjct: 217 VDIEYRALMVAPSDRENAIINVLRYY--EATNAIVFC---------STRAAVNHLTARFN 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   S+  + G ++  ++   + + ++G  ++ IAT V   GID+    ++I  +     
Sbjct: 266 NRNFSVVALSGELTQNERSHALQAMRDGRARVCIATDVAARGIDLPGLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGR 585
              LH+  GR GR
Sbjct: 326 ETLLHR-SGRTGR 337


>gi|320588377|gb|EFX00846.1| eukaryotic translation initiation factor [Grosmannia clavigera
           kw1407]
          Length = 396

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 148/364 (40%), Gaps = 89/364 (24%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR------------------------ 296
           +A+K L ++P    +S      D   DM+ K  +LR                        
Sbjct: 1   MAEKGLEDVPEGQIESNYDETVDSFDDMNLKPDLLRGIYAYGFERPSAIQQRAIIPVIKN 60

Query: 297 ---ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +        I
Sbjct: 61  HDVIAQAQSGTGKTATFSISVLQKIDTNVKQCQALILAPTRELAQQIQKVVVAIGDFMNI 120

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDE 402
                 G        KAL+        +++GT    QD IQ   L        +L   DE
Sbjct: 121 ECHACIGGTSVREDMKALQ----DGPQVVVGTPGRVQDMIQRRFLKTDAMKMFVLDEADE 176

Query: 403 QHRFGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
               G  +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P+
Sbjct: 177 MLSRGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPV 222

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE------------- 505
           + ++    + DE+         EG K ++I  + EE K      + E             
Sbjct: 223 RILV----KKDELT-------LEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNT 271

Query: 506 --RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             + + L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   
Sbjct: 272 RRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQV 331

Query: 561 SIII 564
           S++I
Sbjct: 332 SLVI 335


>gi|268591855|ref|ZP_06126076.1| ATP-independent RNA helicase DbpA [Providencia rettgeri DSM 1131]
 gi|291312828|gb|EFE53281.1| ATP-independent RNA helicase DbpA [Providencia rettgeri DSM 1131]
          Length = 457

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 147/332 (44%), Gaps = 62/332 (18%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQ---NTQIIV 352
           Q   GSGKT    + +   ++A     Q++++ P   LA Q    +++  +   N +I+ 
Sbjct: 46  QAKTGSGKTAAFGLGLLQHIDAKLFKTQSLVLCPTRELADQVANELRRLARAIPNIKILT 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRFG 407
             + G +P + +R +L   AH  AHII+ T       L ++++Q   L  +++DE  R  
Sbjct: 106 --LCGGVPFSVQRDSL---AHA-AHIIVATPGRLLDHLNRETVQLDALQTLVLDEADR-- 157

Query: 408 VQQRLKLTQKATAPHV-LLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                 +      P +  ++   PI R TL+ ++    +I++I+++           I I
Sbjct: 158 ------MLDMGFMPDIETIIDYAPINRQTLLFSATWPEEIARISQQIQNNPQT----IEI 207

Query: 466 NRIDEV---------------IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           N +DE+               IE L+ +LS  + A  +           F +  +   ++
Sbjct: 208 NSVDELPAVEQQFYEVARHEKIELLQKLLSREQPASCVV----------FCNTKKDCQAV 257

Query: 511 HEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           ++  T+S   + ++HG M   +++  +  F NG+ ++L+AT V   G+D+    ++I  N
Sbjct: 258 YDALTASKQSVLVLHGDMEQRERDQTLVRFANGSSRVLVATDVASRGLDIKALEMVI--N 315

Query: 568 AEHFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
            E     ++H  R GR  R  E    I L  P
Sbjct: 316 YELSWDPEVHVHRIGRTARAGESGLAISLCAP 347


>gi|73539745|ref|YP_294265.1| ATP-dependent RNA helicase DbpA [Ralstonia eutropha JMP134]
 gi|72117158|gb|AAZ59421.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Ralstonia eutropha JMP134]
          Length = 474

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 138/331 (41%), Gaps = 75/331 (22%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+   ++A     QA+++ P   LA Q  + I++  +  + + V
Sbjct: 58  IAQAKTGSGKTAAFALALLHRLDARRFDVQAMVLCPTRELADQVTQEIRRLARAEENVKV 117

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P    R  ++ + HG AH+++GT     D I    L L     +++DE  R  
Sbjct: 118 LTLCGGSPM---RPQVDSLVHG-AHVVVGTPGRILDHIDRGSLELSAINTLVLDEADRM- 172

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
               L +       +V    A+  PR   T++ ++     I K+++K   RKP       
Sbjct: 173 ----LDMGFFDDISYV----ASRCPRERQTMLFSATYPAGIDKLSQKFL-RKP------- 216

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAI-- 520
                      +V L+E   +  I     E  ES   S V R   L +HF   S++A   
Sbjct: 217 ----------QEVKLAEKHDSSSIRQYFYEVDESERLSAVGR---LLDHFRPASTLAFCN 263

Query: 521 ---------------------IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                                +HG +   D++ V+  F NG+C +L+AT V   G+D+  
Sbjct: 264 TKARCRDLVDLLRGQGFQALALHGDLEQRDRDQVLVQFANGSCSVLVATDVAARGLDIAQ 323

Query: 560 ASIIIIENAEHFGLAQLHQLR-GRVGR-GEE 588
              +I  N E     ++H  R GR GR GEE
Sbjct: 324 LEAVI--NVEITPDPEVHIHRIGRTGRAGEE 352


>gi|229917498|ref|YP_002886144.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
 gi|229468927|gb|ACQ70699.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
          Length = 481

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 142/339 (41%), Gaps = 34/339 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           SPT+ Q+  I   L+      R   +++   GSGKT    + +I +    E   Q +++ 
Sbjct: 26  SPTEVQQQVIPRALE------REDLVVKAQTGSGKTAAFGIPVIELIDWAENKPQVLVLT 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E +    +  +I    + G  P + +R+ L++    + HI++GT     D
Sbjct: 80  PTRELAVQVREDMTNIGRFKRIKATAVYGKEPFSKQREELKQ----KTHIVVGTPGRVMD 135

Query: 389 SIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGD 442
            I+   L L     +I+DE           L +   A    ++   P  R T+V ++   
Sbjct: 136 HIERETLSLDRIEYLIIDEADEM-------LNRGFLADVEKILQQLPKDRVTMVFSATFP 188

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIE-RLKVVLSEGKKAYWICPQIEEKKESN-- 499
            DI ++ +K     P +  I         IE RL  V    K A      + E  +S   
Sbjct: 189 QDIERLCQKHMN-APARVAIESTGMTASTIEHRLLPVHRNEKLAVLQDITVVENPDSCMI 247

Query: 500 FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F    E  ++++        S   +HG +   D+ +VM+ FK G  + L+AT V   GID
Sbjct: 248 FCRTKENVDTVYAELDKAGYSAERLHGGLEQEDRFAVMNGFKMGNFRYLVATDVAARGID 307

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           V +  ++I  +      + +H+  GR GR  +  + I L
Sbjct: 308 VDNVELVINYDVPVEKESYVHRT-GRTGRAGKQGTAITL 345


>gi|332142673|ref|YP_004428411.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552695|gb|AEA99413.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 480

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 143/343 (41%), Gaps = 58/343 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT-------LVALIAMAAAVEAGGQA 324
           +P+  QE AI ++L+       +L   Q   G+GKT       L  L++         +A
Sbjct: 23  TPSPIQEKAIPEVLEGKD----VLAAAQ--TGTGKTAGFGLPILQRLMSGPKVSANNVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHIII 380
           +I+ P   LA Q  E I  +++   +   ++ G +   PQ  + RK ++        ++I
Sbjct: 77  LILTPTRELAAQVEESICAFSEFLPLKTAVVFGGVGINPQMIKLRKGVD--------VLI 128

Query: 381 GTHALF-----QDSIQYYKLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTA 428
            T         Q+++++ +L ++++DE  R         +++ LKL              
Sbjct: 129 ATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKRVLKLL------------- 175

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  R  +L S    D      K   R P+     P N   + +E+  V + + KK   +
Sbjct: 176 -PEDRQSLLFSATFSDEITTLAKTITRNPVSISTAPANTTVDAVEQHLVTIDKSKKTTAL 234

Query: 489 CPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTC 542
              I+++K      F       N + E  T S    A IHG  S   +   +  FKNG  
Sbjct: 235 ICLIKQQKWEQVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGDI 294

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           K+L+AT +   GID+ +  I++  +  +     +H++ GR GR
Sbjct: 295 KVLVATDIAARGIDISELPIVVNLDLPNTAADYVHRI-GRTGR 336


>gi|91206542|sp|Q4PHU9|DBP2_USTMA RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 552

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 149/369 (40%), Gaps = 55/369 (14%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ----------AV 325
           S+ SAI+     M+   R L +   + GSGKT+    A+ A V    Q          A+
Sbjct: 151 SEPSAIQSQAWPMALSGRDL-VAIAETGSGKTIG--FALPAMVHINAQPLLKPGDGPIAL 207

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+AP   LA Q      ++  ++++    + G +P+  + + L+R     A I I T   
Sbjct: 208 ILAPTRELANQIQVECNRFGGSSRLRTCAVYGGVPKGPQIRDLQR----GAEICIATPGR 263

Query: 386 FQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             D +   K  L     +++DE  R     F  Q R  L Q       L+ +AT  P+ +
Sbjct: 264 LIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQIRPDRQTLMFSAT-WPKEV 322

Query: 436 ------VLTSLGDIDISKITEKPAGR--KPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                  L +   ++I   TE  A    K I  V     +  ++I  L+ + +E  K   
Sbjct: 323 QRLAGDFLNNYAQVNIGS-TELAANHNVKQIIEVCTEFEKKGKLIGHLETISAENGKVII 381

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                     ++ + V +               IHG     +++ V+  FK+G   +++A
Sbjct: 382 F---------TSTKRVADDLTKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGRSPIMVA 432

Query: 548 TTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           T V   G+DV D S +I      N E +    +HQ+ GR GR     +    + P  SK+
Sbjct: 433 TAVASRGLDVKDISYVINYDFPTNTEDY----VHQI-GRTGRAGRTGTAYTYFTPENSKS 487

Query: 604 SYTRLSVLK 612
           +   + +L+
Sbjct: 488 ARELIGILR 496


>gi|30249765|ref|NP_841835.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30180802|emb|CAD85718.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 457

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 150/352 (42%), Gaps = 38/352 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT----LVA 310
           +N+   I + +L     +PT  Q+ AI D++           +     G+GKT    L A
Sbjct: 6   LNLHPAIVKAVLAAGYTAPTPIQQQAIPDLIAGHDV------MASAQTGTGKTAAFMLPA 59

Query: 311 LIAMAAAVEAGGQA---VIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRK 366
           L  +A   +  G+    +++ P   LA Q  +   KY +   +I V  I G MP   + K
Sbjct: 60  LHRLATPAQIRGRGPRILVLTPTRELALQVSDAASKYGKFLPRINVVSILGGMPYPLQNK 119

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
            L +       +++ T     D I+     + +L ++++DE  R      ++  ++    
Sbjct: 120 LLSQTVD----VLVATPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIQDVER---- 171

Query: 422 HVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +  +TP  R TL+ ++  D+ I KI  +         V     ++D + +R+  V  
Sbjct: 172 ---IALSTPATRQTLLFSATLDVAIEKIATRLLKAPKRIQVAAQHTKLDHIEQRMHYVDD 228

Query: 481 EGKKAYWICPQIEE---KKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534
              K   +   + +   K+   F +     +SL ++ +S     A +HG M+  ++   +
Sbjct: 229 LTHKNRLLDHLLRDTTIKQAIVFTATKRDADSLADNLSSQGHKAAAMHGDMTQRERTRTL 288

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              + G  K+L+AT V   GID+ D + +I  +   F    +H++ GR GR 
Sbjct: 289 TGLRQGRLKILVATDVAARGIDIADITHVINFDLPKFAEDYVHRI-GRTGRA 339


>gi|281422440|ref|ZP_06253439.1| ATP-dependent RNA helicase DbpA [Prevotella copri DSM 18205]
 gi|281403503|gb|EFB34183.1| ATP-dependent RNA helicase DbpA [Prevotella copri DSM 18205]
          Length = 439

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 136/338 (40%), Gaps = 41/338 (12%)

Query: 285 LQDMSQKNRMLRILQGD--------VGSGKTLVALIAMAAAVEAG---GQAVIMAPIGIL 333
           L DM Q++ M  IL G+         GSGKTL  L+ +   ++A     QAV++ P   L
Sbjct: 13  LNDM-QQDSMQAILHGNKDVVVLSPTGSGKTLAYLLPLTQLIDATDDEAQAVVVTPGREL 71

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD----- 388
           A Q    +K      + +     G        + ++++   +  I+ GT     D     
Sbjct: 72  ALQSANVLKNMGSGLRAMA--CYGGRATMDEHRVMKQV---RPQIVFGTPGRLNDHLDKG 126

Query: 389 SIQYYKLILVIVDEQHR---FGVQQ---RLKLTQKATAPHVLLMT--ATPIPRTLVLTSL 440
           ++  Y +  +I+DE  +    G Q    RL  +      H LL    A  IP  + +  +
Sbjct: 127 NLSPYHIKYLIIDEFDKCLEMGFQDEMSRLIKSLPGLRRHFLLSATEAEEIPHFVHMGRV 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
             ID     ++   R  I  V  P+   D++     ++ S G ++  +          N+
Sbjct: 187 EKIDYRVDEDQVPDRVHIYKVDSPVK--DKLESLSLLLRSLGDQSTIVF--------LNY 236

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           R  VER N        S +  HG +   ++E+ +  F NG+  +L++T +   G+D+ D 
Sbjct: 237 RDSVERTNKYLVEQGFSTSFFHGGLEQKEREASLYRFSNGSANILVSTDLASRGLDIPDI 296

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             II  +        +H++ GR  R E       L  P
Sbjct: 297 DNIIHYHMPESEDGYIHRV-GRTARWEAQGKAFFLLGP 333


>gi|145351012|ref|XP_001419882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580115|gb|ABO98175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 440

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 124/290 (42%), Gaps = 40/290 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            GSGKTL     M A  +   Q          +++AP   LAQQ  +      + + +  
Sbjct: 73  TGSGKTLA--FGMPALTQIHSQPPCKPGQPICLVLAPTRELAQQTAKVFDDAGEASGVRC 130

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             + G  P+  ++  ++  A G A +I+ T    +D      I+  ++ ++++DE  R  
Sbjct: 131 VCVYGGAPKYEQKAQMK--AGGGAAVIVATPGRLRDFMEEGVIKLDRVTMLVLDEADRML 188

Query: 406 -FGVQQRLKLTQKAT-APHVLLMTATPIPRTL-VLTSLGDIDISKITEKPAGRKPIKT-- 460
             G +  ++    AT A    +M +   P+++  L S    +  K+     G K  ++  
Sbjct: 189 DLGFEPEIRAIAGATRADRQTVMFSATWPQSVQSLASEFMCNPIKVRIGAEGLKASQSIT 248

Query: 461 ----VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
               V+ P ++   +   +K  L +GK         E  +   F    +   +LH+  + 
Sbjct: 249 QIVEVVEPQDKDRHLARVMKQYLGKGK---------EVPRTLIFGLYKKECANLHQRLSR 299

Query: 517 S--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                 IHG MS  D+E  +D+FK GT ++LIAT V   G+D+ +   +I
Sbjct: 300 EWPAVCIHGDMSQHDREKSVDAFKKGTSRILIATDVAARGLDIKEVEYVI 349


>gi|332977827|gb|EGK14583.1| primosome assembly protein PriA [Psychrobacter sp. 1501(2011)]
          Length = 778

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 7/147 (4%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +  + Q+ A+  I+    Q      +L G  GSGKT V L AM A +EAG Q +
Sbjct: 205 LAKMPLTLNEQQQQAVDKIVATAKQAKYGGFLLNGVTGSGKTEVYLQAMQAILEAGKQVL 264

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F  ++  N    + ++   +    R    E    G+A IIIGT +
Sbjct: 265 VLVPEIGLTPQTRARFAARFAAN----ILLLHSGLNVTQRLHGWEDCRQGRAQIIIGTRS 320

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                  +  L L++VDE H    +Q+
Sbjct: 321 SILHP--FADLGLIVVDESHDQSYKQQ 345


>gi|154505955|ref|ZP_02042693.1| hypothetical protein RUMGNA_03497 [Ruminococcus gnavus ATCC 29149]
 gi|153793973|gb|EDN76393.1| hypothetical protein RUMGNA_03497 [Ruminococcus gnavus ATCC 29149]
          Length = 742

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 19/195 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  QE AI+   Q+ S+  R   +L G  GSGKT V +  +   V  G QA+++ P I +
Sbjct: 206 TAEQEHAIECFWQEYSRDVRAAYLLYGVTGSGKTEVYIEMIRRVVSEGKQAIVLIPEIAL 265

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F +++       V I+   M    R   L R   G+  ++IG   ALF     
Sbjct: 266 TYQTVMRFYRRFGNR----VSILNSRMSAGERYDQLMRAKAGEIDVMIGPRSALF---TP 318

Query: 392 YYKLILVIVDEQHR--FGVQQ------RLKLTQKATAPH--VLLMTATPIPRTLVLTSLG 441
           + +L L+++DE+H   +  +Q      R    ++A   H  V+L +ATP    +  +  G
Sbjct: 319 FPELGLIVIDEEHETTYKSEQIPRYHARETAIERANLEHASVVLGSATPSLEAMYRSKNG 378

Query: 442 DIDISKITEKPAGRK 456
           +  + ++  +   +K
Sbjct: 379 EYRLLELKNRSGMQK 393


>gi|3775985|emb|CAA09195.1| RNA helicase [Arabidopsis thaliana]
 gi|9294443|dbj|BAB02563.1| RNA helicase [Arabidopsis thaliana]
          Length = 391

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 143/336 (42%), Gaps = 49/336 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  Q+ A+  ILQ          I Q   G+GKT +  +++   V+      QA+I++P
Sbjct: 41  PSAIQQRAVMPILQGRDV------IAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSP 94

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  + I+    +  I      G        + LE   HG  H++ GT     D 
Sbjct: 95  TRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLE---HG-VHVVSGTPGRVCDM 150

Query: 389 ----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
               S++   + L+I+DE       G + ++    +   P   V L++AT     L +TS
Sbjct: 151 IKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTS 210

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW----ICPQIEEK 495
                  K   +P        V I + R +  +E +K      +K  W    +C   +  
Sbjct: 211 -------KFMTEP--------VKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL 255

Query: 496 KESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +    F +   + + L E   S   +++ +HG M   +++++M+ F++G  ++LI T 
Sbjct: 256 TITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTD 315

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           V   GIDV   S++I  +  +     +H++ GR GR
Sbjct: 316 VWARGIDVQQVSLVINYDLPNNRELYIHRI-GRSGR 350


>gi|171677330|ref|XP_001903616.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936733|emb|CAP61391.1| unnamed protein product [Podospora anserina S mat+]
          Length = 652

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 130/322 (40%), Gaps = 42/322 (13%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +AVI+AP   LA Q +E +        +    I G   +  +R  L +  +  A II  T
Sbjct: 298 RAVIVAPTRELAMQTHEAVSGLASQVGLTAVCIYGGASKDDQRALLRK--NSGADIITAT 355

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAP----HVLLMTATP 430
               +D     ++    ++  ++DE  R    G +  +KL      P      L+ TAT 
Sbjct: 356 PGRLKDFLSDNTVNLGDVMFAVLDEADRMLDKGFEDDIKLILGGCPPKEERQTLMFTATW 415

Query: 431 IPRTLVLTSLGDIDISKIT---EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                VL     ++  K+T      AG     +  + +     + ++++VV   GK+   
Sbjct: 416 PTSVRVLAESFMVNPVKVTIGNRTRAGEDGNSSGTVELQANSRIEQKVEVVDPRGKEQRL 475

Query: 488 ICPQIEEKKESN----------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           +    E +K S           ++    R     E     +A IHG +    +   +++F
Sbjct: 476 LELLREAQKGSAKNDRILVFCLYKKEAVRVEQFLERRGIRVASIHGDLRQDQRTKSLEAF 535

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIII-------IENAEHFGLAQLHQLRGRVGRGEEIS 590
           K GT  +L+AT V   G+D+ +  ++I       IE+        +H++ GR GR  +  
Sbjct: 536 KAGTTSVLVATDVAARGLDIPEVKLVINVTFPLTIED-------YVHRI-GRTGRAGKTG 587

Query: 591 SCILLYHPPLSKNSYTRLSVLK 612
             I L+      +S + +++LK
Sbjct: 588 KAITLFTEHDKAHSGSLVNILK 609


>gi|159900617|ref|YP_001546864.1| primosomal protein N' [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893656|gb|ABX06736.1| primosomal protein N' [Herpetosiphon aurantiacus ATCC 23779]
          Length = 829

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 29/218 (13%)

Query: 265 ILRNIP---FSP--TKSQESAIKDIL--QDMSQKNRMLR--ILQGDVGSGKTLVALIAMA 315
           +L  IP   F P  T  QE   + I+  QD + +    +  +L G  GSGKT + L A+ 
Sbjct: 266 LLGRIPPLEFPPELTLEQERGWRQIVAAQDTASRTGKAKPILLHGVTGSGKTELYLRAIG 325

Query: 316 AAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
            A+  GGQA+++ P I +  Q    F  ++ Q     + ++   +    R     R+  G
Sbjct: 326 RALRNGGQALVLVPEIALTTQLVRRFAARFPQQ----LAVLHSELSVGERYDEWRRLRRG 381

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHV 423
            A + IG+ +     +   KL L+IVDE+H    +             +KL + A A  +
Sbjct: 382 DAQVAIGSRSAIWSPMS--KLQLIIVDEEHEHSFKHEATPYYHARDLAVKLAELAGA-VL 438

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           +L +ATP   T     +   ++ ++ E+  GRK +  V
Sbjct: 439 ILGSATPSLETAYAVQINKYEVLELHER-VGRKTVAGV 475


>gi|15230945|ref|NP_188610.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative / DEAD box RNA helicase, putative [Arabidopsis
           thaliana]
 gi|109893655|sp|Q94A52|RH2_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 2
 gi|332642762|gb|AEE76283.1| DEAD-box ATP-dependent RNA helicase 2 [Arabidopsis thaliana]
          Length = 408

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 143/336 (42%), Gaps = 49/336 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  Q+ A+  ILQ          I Q   G+GKT +  +++   V+      QA+I++P
Sbjct: 58  PSAIQQRAVMPILQGRDV------IAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSP 111

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  + I+    +  I      G        + LE   HG  H++ GT     D 
Sbjct: 112 TRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLE---HG-VHVVSGTPGRVCDM 167

Query: 389 ----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
               S++   + L+I+DE       G + ++    +   P   V L++AT     L +TS
Sbjct: 168 IKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTS 227

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW----ICPQIEEK 495
                  K   +P        V I + R +  +E +K      +K  W    +C   +  
Sbjct: 228 -------KFMTEP--------VKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL 272

Query: 496 KESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +    F +   + + L E   S   +++ +HG M   +++++M+ F++G  ++LI T 
Sbjct: 273 TITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTD 332

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           V   GIDV   S++I  +  +     +H++ GR GR
Sbjct: 333 VWARGIDVQQVSLVINYDLPNNRELYIHRI-GRSGR 367


>gi|94311518|ref|YP_584728.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93355370|gb|ABF09459.1| RNA helicase [Cupriavidus metallidurans CH34]
          Length = 556

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 124/292 (42%), Gaps = 29/292 (9%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LA Q Y+ + +Y ++T +   ++ G +    +  AL R       I++ T
Sbjct: 151 RALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRR----GVEILVAT 206

Query: 383 HALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLV 436
                    Q S+   ++ ++++DE  R      L   Q+       ++   P  R TL+
Sbjct: 207 PGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQR-------IINLLPAQRQTLL 259

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK- 495
            ++    +I K+      ++P+   +   N  +E + ++   + +G K   +   ++++ 
Sbjct: 260 FSATFSPEIKKLASSYL-KQPVTIEVARSNSTNENVRQVVYQVQDGHKQAAVVHLLKQRA 318

Query: 496 KESNFRSVVERFNS------LHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            E   R  +   NS      L  H      + A IHG  +  ++   +D FKNGT   L+
Sbjct: 319 NEQQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKNGTIDALV 378

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT V   G+D+     +I  +        +H++ GR GR       + ++ P
Sbjct: 379 ATDVAARGLDIPAMPCVINFDLPFSAEDYVHRI-GRTGRAGASGDALSIFVP 429


>gi|59713337|ref|YP_206112.1| ATP-dependent RNA helicase DbpA [Vibrio fischeri ES114]
 gi|59481585|gb|AAW87224.1| ATP-dependent RNA helicase, specific for 23S rRNA [Vibrio fischeri
           ES114]
          Length = 462

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 137/326 (42%), Gaps = 47/326 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I QG  GSGKT    + + A +       Q++++ P   LA Q  + I+K  +    I V
Sbjct: 45  IAQGKTGSGKTAAFGLGLLANLNVKRFRVQSLVLCPTRELADQVAKEIRKLARAIHNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P   +  +LE   HG AHII+GT    ++ ++   L L      ++DE  R  
Sbjct: 105 LTLCGGVPFGPQIGSLE---HG-AHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRML 160

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV- 461
             G Q  +   L         LL +AT  P+   + S+ D    +I   P   K  +TV 
Sbjct: 161 EMGFQDAIDAVLDHAPVKRQNLLFSATFPPQ---IKSIAD----RIMNDPIMTKAEETVE 213

Query: 462 -------IIPINRIDEVIERLKVVL--SEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
                     +   ++ +E L+++L   + +     C         N + V +       
Sbjct: 214 NTSINQHFFKVGDFEDRLEALQILLLKHQPESTVIFC---------NTKRVTQEVADELR 264

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           H+  S+  +HG +   D++  +  F N +  +L+AT V   G+D+   S+  + N E   
Sbjct: 265 HYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDVAARGLDI--ESLDAVVNFELSR 322

Query: 573 LAQLHQLR-GRVGRGEEISSCILLYH 597
             ++H  R GR GR       + L++
Sbjct: 323 DPEVHVHRIGRTGRAGNKGIALSLFN 348


>gi|70994152|ref|XP_751923.1| DEAD/DEAH box helicase [Aspergillus fumigatus Af293]
 gi|74671396|sp|Q4WPE9|PRP28_ASPFU RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|66849557|gb|EAL89885.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus Af293]
 gi|159125162|gb|EDP50279.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus A1163]
          Length = 796

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 129/298 (43%), Gaps = 45/298 (15%)

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAH---GQA 376
           G  A+++AP   LAQQ     +K+TQ     +V I+ G+        + E  A+     A
Sbjct: 442 GPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGH--------SFEEQAYSLRNGA 493

Query: 377 HIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQ-------RLKLTQKA--- 418
            III T     D I+   L+L     VI+DE  R    G ++        L +T +    
Sbjct: 494 EIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDT 553

Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             A +   M +    +T++ T+     + +I  K   R  I T+      +D V +R+++
Sbjct: 554 EEAENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEM 613

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----------SIAIIHGRMSD 527
           +  E K+   +   +       FR  +  F ++  +  +          S   +HG  + 
Sbjct: 614 IAGEDKRKKRLADIL---SSGEFRPPIIVFVNIKRNCDAIAREIKQMGFSSVTLHGSKTQ 670

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
             +E+ + S +NG+  +L+AT +   GIDV D S+++  N  +   +  H++ GR GR
Sbjct: 671 EQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRI-GRTGR 727


>gi|197337401|ref|YP_002157747.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Vibrio fischeri MJ11]
 gi|197314653|gb|ACH64102.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Vibrio fischeri MJ11]
          Length = 462

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 137/326 (42%), Gaps = 47/326 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I QG  GSGKT    + + A +       Q++++ P   LA Q  + I+K  +    I V
Sbjct: 45  IAQGKTGSGKTAAFGLGLLANLNVKRFRVQSLVLCPTRELADQVAKEIRKLARAIHNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P   +  +LE   HG AHII+GT    ++ ++   L L      ++DE  R  
Sbjct: 105 LTLCGGVPFGPQIGSLE---HG-AHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRML 160

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV- 461
             G Q  +   L         LL +AT  P+   + S+ D    +I   P   K  +TV 
Sbjct: 161 EMGFQDAIDAVLDHAPVKRQNLLFSATFPPQ---IKSIAD----RIMNDPIMTKAEETVE 213

Query: 462 -------IIPINRIDEVIERLKVVL--SEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
                     +   ++ +E L+++L   + +     C         N + V +       
Sbjct: 214 NTSINQHFFKVGDFEDRLEALQILLLKHQPESTVIFC---------NTKRVTQEVADELR 264

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           H+  S+  +HG +   D++  +  F N +  +L+AT V   G+D+   S+  + N E   
Sbjct: 265 HYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDVAARGLDI--ESLDAVVNFELSR 322

Query: 573 LAQLHQLR-GRVGRGEEISSCILLYH 597
             ++H  R GR GR       + L++
Sbjct: 323 DPEVHVHRIGRTGRAGNKGIALSLFN 348


>gi|117922105|ref|YP_871297.1| primosomal protein N' [Shewanella sp. ANA-3]
 gi|117614437|gb|ABK49891.1| primosomal protein N' [Shewanella sp. ANA-3]
          Length = 736

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 22/215 (10%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L   P    K Q  A+  + Q   Q+     +L+G  GSGKT V L  +   ++ G QA+
Sbjct: 200 LDEAPHRLNKEQAVAVTLLTQ---QQGYHCTLLEGITGSGKTEVYLAVLEHILKQGKQAL 256

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           I+ P IG+  Q    F +++  N  ++   +T N     R +A  +   GQA IIIGT +
Sbjct: 257 ILVPEIGLTPQTINRFKRRFKVNVAVLHSGLTDN----QRLEAWRQARCGQAAIIIGTRS 312

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-----------TAPHVLLMTATPIPR 433
                + +  +I  I+DE+H    +Q+  +   A           + P V+L +ATP   
Sbjct: 313 ALFTPMAFPGVI--ILDEEHDSSFKQQEGVGYHARDLAVMRGHLESIP-VILGSATPSLE 369

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           TL     G     ++ E+    K ++  II I  +
Sbjct: 370 TLQNALSGRYHHLQLGERAGNAKKVRQGIIDIKNL 404


>gi|304392954|ref|ZP_07374885.1| ATP-dependent RNA helicase protein [Ahrensia sp. R2A130]
 gi|303294952|gb|EFL89321.1| ATP-dependent RNA helicase protein [Ahrensia sp. R2A130]
          Length = 634

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 133/319 (41%), Gaps = 50/319 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   IA+A  +  G +         A+++AP   LA Q    ++    +
Sbjct: 41  LVSAQTGSGKTVAFGIAIAPTLLDGEERFGPADKPLALVIAPTRELALQVCRELEWLYAD 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVI 399
              ++    G M     R+ALER      HI++GT    +D I        Q   ++L  
Sbjct: 101 AGAVITSCVGGMDIRTERRALER----GVHIVVGTPGRLRDHISRRAMDCRQLQAVVLDE 156

Query: 400 VDEQHRFGVQQRLKLTQKATAPH---VLLMTATPIPRTLV-LTSLGDIDISKIT-----E 450
            DE    G ++ L+   +A AP     L+ +AT +P  +  L      D  +IT     +
Sbjct: 157 ADEMLDLGFKEDLEFILEA-APEERRTLMFSAT-VPNAIAGLAKSYQRDAVRITTEAERD 214

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           + A  +    V+ P  R + ++  L+    E   A   C         N R+ V   N +
Sbjct: 215 QHADIEYRALVVAPRERENAIVNVLRYYDPE--NALVFC---------NTRASV---NHM 260

Query: 511 HEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              FT+   S+  + G +S  ++   + + ++G  K+ IAT V   GID+    ++I  +
Sbjct: 261 VARFTNRGFSVVALSGELSQNERSHALQALRDGRAKVCIATDVAARGIDLPKLELVIHAD 320

Query: 568 AEHFGLAQLHQLRGRVGRG 586
                   LH+  GR GR 
Sbjct: 321 LPSNPETLLHR-SGRTGRA 338


>gi|209549420|ref|YP_002281337.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535176|gb|ACI55111.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 659

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 130/323 (40%), Gaps = 60/323 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  +  GG+         A+++AP   LA Q    ++   + 
Sbjct: 41  LVSAQTGSGKTVAFGLALAPTLLEGGERFGNAGAPLALVIAPTRELALQVKRELEWLYEM 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399
           T  ++    G M     R++LER     AHI++GT     D I+   L        +L  
Sbjct: 101 TGAVIASCVGGMDIRSERRSLER----GAHIVVGTPGRLCDHIRRRALDMSELKAAVLDE 156

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            DE    G ++ L+          +L +A    RTL+ ++     I+K+  K   R  ++
Sbjct: 157 ADEMLDLGFREDLEF---------ILDSAPDERRTLMFSATVPAAIAKLA-KSYQRNAVR 206

Query: 460 T-----------------VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
                             ++ P +R + +I  L+    E   A   C         + R+
Sbjct: 207 ISTAAEAKQHVDIEYRALMVAPSDRENAIINVLRYY--EATNAIVFC---------STRA 255

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            V    +   +   S+  + G ++  ++   + + ++G  ++ IAT V   GID+    +
Sbjct: 256 AVNHLTARFNNRNFSVVALSGELTQNERTHALQAMRDGRARVCIATDVAARGIDLPGLDL 315

Query: 563 IIIENAEHFGLAQLHQLRGRVGR 585
           +I  +        LH+  GR GR
Sbjct: 316 VIHADLPTNPDTLLHR-SGRTGR 337


>gi|41393175|ref|NP_958918.1| eukaryotic translation initiation factor 4A, isoform 1B [Danio
           rerio]
 gi|29612461|gb|AAH49427.1| Eukaryotic translation initiation factor 4A, isoform 1B [Danio
           rerio]
 gi|122890762|emb|CAM13210.1| eukaryotic translation initiation factor 4A isoform 1B [Danio
           rerio]
          Length = 406

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++    G QA+++AP   LAQQ  + I            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIDIELKGTQALVLAPTRELAQQIQKVILALGDYMGATCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRNEVQKLQAEAPHIVVGTPGRVYDMLNRKFLSSKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK +T+  V+L++AT     L +T+               R+P++   I
Sbjct: 190 RGFKDQIYEIFQKLSTSIQVVLLSATMPAEVLDVTT------------KFMREPVR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      +K  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEKEEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   D++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSALHGDMDQKDRDLIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|195131547|ref|XP_002010212.1| GI14822 [Drosophila mojavensis]
 gi|193908662|gb|EDW07529.1| GI14822 [Drosophila mojavensis]
          Length = 963

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG  S  +++SV+  F+NG   +LIAT V   G+DV D   +I  +  +     +H++ 
Sbjct: 519 IHGDKSQSERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRI- 577

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           GR GR +++ +    + P  +K +   +SVL+
Sbjct: 578 GRTGRCQQLGTAYTFFTPDNAKQARELISVLE 609


>gi|90075448|dbj|BAE87404.1| unnamed protein product [Macaca fascicularis]
          Length = 566

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 140 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKST 199

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 200 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  +  ++G +++S      A
Sbjct: 256 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------A 309

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + +++I  ++ ++SE           +E K   F     R + L 
Sbjct: 310 NHNILQIVDVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELT 358

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 359 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 418

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 419 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 461


>gi|15215678|gb|AAK91384.1| AT3g19760/MMB12_21 [Arabidopsis thaliana]
 gi|25090064|gb|AAN72219.1| At3g19760/MMB12_21 [Arabidopsis thaliana]
          Length = 408

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 143/336 (42%), Gaps = 49/336 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  Q+ A+  ILQ          I Q   G+GKT +  +++   V+      QA+I++P
Sbjct: 58  PSAIQQRAVMPILQGRDV------IAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSP 111

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  + I+    +  I      G        + LE   HG  H++ GT     D 
Sbjct: 112 TRGLATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLE---HG-VHVVSGTPGRVCDM 167

Query: 389 ----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
               S++   + L+I+DE       G + ++    +   P   V L++AT     L +TS
Sbjct: 168 IKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTS 227

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW----ICPQIEEK 495
                  K   +P        V I + R +  +E +K      +K  W    +C   +  
Sbjct: 228 -------KFMTEP--------VKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL 272

Query: 496 KESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +    F +   + + L E   S   +++ +HG M   +++++M+ F++G  ++LI T 
Sbjct: 273 TITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTD 332

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           V   GIDV   S++I  +  +     +H++ GR GR
Sbjct: 333 VWARGIDVQQVSLVINYDLPNNRELYIHRI-GRSGR 367


>gi|220922880|ref|YP_002498182.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219947487|gb|ACL57879.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 545

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 136/331 (41%), Gaps = 50/331 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQ-HYEFIKKYTQ 346
           ++    GSGKT+   +AMA  +  GG+         A+++AP   LA Q H E    Y  
Sbjct: 40  LVSAQTGSGKTVAYGLAMADTLLDGGETLPPPGAPLALVIAPTRELALQVHRELSWLYGA 99

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILV 398
               +   + G  P+   R   E +     HI++GT    +D ++   L        +L 
Sbjct: 100 AGARVAACVGGMDPRRESRLLGEGV-----HIVVGTPGRLRDHLERRNLDPSRMRATVLD 154

Query: 399 IVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTSLGD--------IDISKI 448
             DE    G ++ L+    AT      LL +AT +P+ +V  +L +        I ++  
Sbjct: 155 EADEMLDLGFREDLEFILGATPAERRTLLFSAT-LPKGIV--ALAEHYQREALRIAVAGE 211

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           T   A  +     I+P      V+  L++V  E + A   C         N R+ V    
Sbjct: 212 TRGHADIEYRALRILPRETELVVVNTLRLV--EARTAIVFC---------NTRNAVRHLQ 260

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           ++      +   + G +   ++ + + + ++G  ++ +AT V   GID+    ++I    
Sbjct: 261 AVLTERGFTAVALSGELGQGERNAALQALRDGRARVCVATDVAARGIDLPGLGLVIHAEL 320

Query: 569 EHFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
            H   A++ Q R GR GR  +    +LL  P
Sbjct: 321 PHD--AEVLQHRSGRTGRAGQKGISVLLVPP 349


>gi|152995705|ref|YP_001340540.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836629|gb|ABR70605.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 438

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 141/313 (45%), Gaps = 43/313 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKK---YTQNTQI 350
           + Q   GSGKTL   IA+   +     G QA++M P   LA Q  + I+K   Y  N ++
Sbjct: 24  LAQAQTGSGKTLAFSIALLLKINPRFFGVQALVMCPTRELADQVSKEIRKVARYQDNIKV 83

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR 405
           +   + G MP   +  +LE   HG AHI++GT       L + +++   L  +++DE  R
Sbjct: 84  LS--LCGGMPFGPQIGSLE---HG-AHIVVGTPGRLMEHLRKGTLKLNALNTLVLDEADR 137

Query: 406 F-------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
                    +++ ++LT   +    LL +AT       ++   +   + I+ K   ++ +
Sbjct: 138 MLDMGFVDSIREIVELT--PSNRQTLLFSATYGDGIEAISK--EFQSTPISIKVEAQEDL 193

Query: 459 KTVIIPINRIDEVIERLKVVLS-----EGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           K  I       E  ++ + +L+     E ++A   C     K ES   +     + L EH
Sbjct: 194 KPNIEQFFVRSENKDKCETLLATLQHFEPRQAIVFC---NTKAESQVVA-----DWLSEH 245

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             ++ A IHG +    ++ V+  F N +  +L+AT V   GIDV +  +++  +      
Sbjct: 246 KVAAQA-IHGDLEQRQRDQVLVRFSNQSSCVLVATDVAARGIDVKEIDLVVNYDTTRDTD 304

Query: 574 AQLHQLRGRVGRG 586
              H++ GR GR 
Sbjct: 305 VHTHRI-GRTGRA 316


>gi|253771018|gb|ACT35657.1| vasa-like protein [Haliotis asinina]
          Length = 763

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 141/323 (43%), Gaps = 41/323 (12%)

Query: 302 VGSGKTLVALI-AMAAAVEAG-----------GQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+  +   V+ G            QA+I+AP   L  Q +   +K+++ T+
Sbjct: 353 TGSGKTAAFLLPTLTCMVKEGLTTSQFSEVQEPQAIIVAPTRELVVQIHSDARKFSRGTE 412

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   ++ G     H+ + +ER     AH+++GT     D I+  K+ L     +I+DE  
Sbjct: 413 VRPVVVYGGTSVGHQLREVER----GAHVVVGTPGRLLDFIEKGKIGLGKVKFLILDEAD 468

Query: 405 RF---GVQQRL-KLTQKATAP-----HVLLMTAT-PIP-RTLVLTSLGDIDISKITEKPA 453
           R    G +  + KL ++   P       L+ +AT P   + L    L D     +     
Sbjct: 469 RMLDMGFEPCIRKLVEQLGMPPKTQRQTLMFSATFPTEIQKLAADFLNDYLFLTVGRVGG 528

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
               ++     ++R+ +  E+L  +L+E      +   +E+K+ ++F   +  + S    
Sbjct: 529 ANTDVEQNFFEVDRL-QKREKLCSILTESGSDKTLV-FVEQKRNADF---LASYLSQSGF 583

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
            T+SI   HG     ++E  +  FK GT  +LIAT+V   G+D+ +   ++  +      
Sbjct: 584 PTTSI---HGDRLQREREEALRDFKRGTAPILIATSVAARGLDIPEVKHVVNYDLPSSID 640

Query: 574 AQLHQLRGRVGRGEEISSCILLY 596
             +H++ GR GR   +      Y
Sbjct: 641 EYVHRI-GRTGRCGNLGKATSFY 662


>gi|91207081|sp|Q2UPY3|IF4A_ASPOR RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|83766239|dbj|BAE56382.1| unnamed protein product [Aspergillus oryzae]
          Length = 421

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 141/326 (43%), Gaps = 70/326 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+ AIK I++          I Q   G+GKT    I+    ++    G QA+I+AP
Sbjct: 71  PSAIQQRAIKPIIKGSD------VIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAP 124

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA-HIIIGTHALFQD 388
              LAQQ  + +        I      G        KAL     G+   +++GT     D
Sbjct: 125 TRELAQQIQKVVVAIGDFMNITCHACIGGTAVREDMKAL-----GEGPEVVVGTPGRVHD 179

Query: 389 SIQ--------YYKLILVIVDEQHRFGVQQRL----KLTQKATAPHVLLMTATPIPRTLV 436
            IQ          + IL   DE    G  +++    +L  ++T   V+L++AT +P+   
Sbjct: 180 MIQRRVLKTDHLKQFILDEADEMLSRGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ--- 233

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                  D+ ++T K   R P++ ++          ++ ++ L EG K ++I  + EE K
Sbjct: 234 -------DVLEVTTKFM-RDPVRILV----------KKQELTL-EGIKQFYIAVEKEEWK 274

Query: 497 ESNFRSVVE---------------RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFK 538
                 + E               + + L +  T+   +++ +HG M    ++ +M  F+
Sbjct: 275 LDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFR 334

Query: 539 NGTCKLLIATTVIEVGIDVVDASIII 564
           +G+ ++LIAT ++  GIDV   S++I
Sbjct: 335 SGSSRVLIATDLLARGIDVQQVSLVI 360


>gi|19113180|ref|NP_596388.1| ATP-dependent RNA helicase Dbp3 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|1723271|sp|Q10202|DBP3_SCHPO RecName: Full=ATP-dependent RNA helicase dbp3
 gi|3451298|emb|CAA20430.1| ATP-dependent RNA helicase Dbp3 (predicted) [Schizosaccharomyces
           pombe]
          Length = 578

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 137/312 (43%), Gaps = 35/312 (11%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           + ++++P   LA Q YE +    Q T +   ++ G  P++ + +A +      A +IIGT
Sbjct: 238 RVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAK-----NASVIIGT 292

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLK--------LTQKATAPHVLLM 426
                D     SI   ++  +++DE  R    G +Q ++         T+  +   V   
Sbjct: 293 PGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFS 352

Query: 427 TATPIP-RTLVLTSLGD-IDISKITEKPAGRKPIKTVI----IPINRIDEVIERLKVVLS 480
              P   R L  T L D + I+  +++ A  + I  ++     P ++   +   L+  LS
Sbjct: 353 ATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLS 412

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G K   I   +  KKE+   + VE   +L   +  ++  IHG MS   +   ++ FK+G
Sbjct: 413 SGGKDDKILIFVLYKKEA---ARVE--GTLARKY--NVVGIHGDMSQGARLQALNDFKSG 465

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
            C +L+AT V   G+D+    ++I           +H++ GR GR     + I  + P  
Sbjct: 466 KCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRI-GRTGRANTKGTAITFFTPQD 524

Query: 601 SKNSYTRLSVLK 612
             ++   ++VL+
Sbjct: 525 KSHAGELVNVLR 536


>gi|220908188|ref|YP_002483499.1| RecQ family ATP-dependent DNA helicase [Cyanothece sp. PCC 7425]
 gi|219864799|gb|ACL45138.1| ATP-dependent DNA helicase, RecQ family [Cyanothece sp. PCC 7425]
          Length = 552

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 141/345 (40%), Gaps = 50/345 (14%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            QE+AI  +L+       M        GSGK+ +  +A   A+E  G  ++++P+  L Q
Sbjct: 31  GQEAAIASLLKGQDTLAVM------PTGSGKSAIYQLA---AMELPGCTIVVSPLIALQQ 81

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ-----DSI 390
              E ++     +     +I     +  R++A   + +G    +      F      + I
Sbjct: 82  DQVETLQDQDWGS---AALINSTTKEGDRQRAFRDLQNGDLEFLFLAPEQFNNPEVLEQI 138

Query: 391 QYYKLILVIVDEQH---RFGVQQR---LKLTQKATA---PHVLLMTATPIP--RTLVLTS 439
           Q     L +VDE H    +G   R   L+L     A   P +L +TAT  P  R  ++  
Sbjct: 139 QAAHPSLFVVDEAHCVSEWGHDFRPDYLRLGTVIAALEHPTILALTATAAPPVRQEIVDR 198

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--E 497
           L   +   I +     +P   + + + R D+  E+L+ + +      W+  Q E      
Sbjct: 199 LQMREAQVIVQ--GFDRP--NIWLGVKRFDDEAEKLEALQA------WV-RQAERPGMIY 247

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  R   E+  +       +I   H  M   ++E    +F NG  ++++ATT   +G+D 
Sbjct: 248 AATRKNAEKVAAALADLGFAIGFYHAGMRAAEREHTQTAFMNGAIEVIVATTAFGMGVDK 307

Query: 558 VDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHP 598
            +   +      H+ +++     +Q  GR GR    ++ IL Y+P
Sbjct: 308 ANVRFVY-----HYDISESLDAYYQEIGRAGRDGAPATAILFYNP 347


>gi|124491306|gb|ABN12944.1| Lia2p [Tetrahymena thermophila]
          Length = 522

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 135/317 (42%), Gaps = 50/317 (15%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL  L+     + A        G   +++AP   LA Q     +++ +++++ 
Sbjct: 69  AETGSGKTLSFLLPSIVHINAQPTVKKGDGPIVLVLAPTRELAMQIERESERFGKSSKLK 128

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR- 405
              I G   +  +R  L++       ++I T       L  ++    ++  +++DE  R 
Sbjct: 129 CACIYGGADKYSQRALLQQ----GVDVVIATPGRLIDFLESETTTLRRVTYLVLDEADRM 184

Query: 406 ----FGVQQRLKLTQKATAPHVLLMTATP-----------IPRTLVLTSLGDIDISKITE 450
               F +Q R  L Q       L+ +AT               T V   +G  +++ I E
Sbjct: 185 LDMGFEIQIRKILGQIRPDRQTLMFSATWPKNVQNLAQDYCKNTPVYVQIGKHELA-INE 243

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV-VERFNS 509
           +    K I  V     +I+++I++L  +  + K    I  Q ++  ES  R +  E F  
Sbjct: 244 RI---KQIVYVTDQSKKINQLIKQLDCLTQKDK--VLIFAQTKKGCESMSRILNKEGFKC 298

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L          IHG  +  D++ VM+ FK+G C++LIAT V   G+DV D S +   +  
Sbjct: 299 L---------AIHGDKAQKDRDYVMNKFKSGECRILIATDVASRGLDVKDVSHVFNYDFP 349

Query: 570 HFGLAQLHQLRGRVGRG 586
                 +H + GR GR 
Sbjct: 350 KVMEDYVHSI-GRTGRA 365


>gi|121726416|ref|ZP_01679690.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae V52]
 gi|153818171|ref|ZP_01970838.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae NCTC
           8457]
 gi|227812555|ref|YP_002812565.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|298499762|ref|ZP_07009568.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
 gi|121631164|gb|EAX63539.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae V52]
 gi|126511277|gb|EAZ73871.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae NCTC
           8457]
 gi|227011697|gb|ACP07908.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|297541743|gb|EFH77794.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
          Length = 428

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 116/271 (42%), Gaps = 25/271 (9%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E +        +    + G
Sbjct: 66  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCG 125

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +  ++ AL        +I++ T      L Q  ++  ++  +++DE  R        
Sbjct: 126 GVDKTEQQNALAE----NPNILVATTGRLFDLTQSGLRLNRVTTLVLDEADR-------- 173

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 174 LLDMGFWPQVQALASQTAGVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAV 233

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +     ++HG  S
Sbjct: 234 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKS 293

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             ++E+ +  FKNGT ++LIAT ++  GI +
Sbjct: 294 QSEREAALAEFKNGTTQVLIATDLLARGIHI 324


>gi|326791603|ref|YP_004309424.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326542367|gb|ADZ84226.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 477

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 155/370 (41%), Gaps = 71/370 (19%)

Query: 273 PTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIM 327
           PT  QE  I ++L  QD+        I+Q   GSGKT    I +   V   E   QA+++
Sbjct: 24  PTPVQERVIPEVLRKQDL--------IVQSQTGSGKTAAFAIPICQEVIWEENKPQALVL 75

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LA Q  E   +  +  +I    + G  P   ++K L +    + H+++GT     
Sbjct: 76  TPTRELAIQVKEDFFQIGRFKRIKAVGLYGKAPFEVQQKELSQ----KTHVVVGTPGRVL 131

Query: 388 DSIQYYKL------ILVI--VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLT 438
           D ++   L       LVI   DE  R G   +++           ++ A P+ R TL+ +
Sbjct: 132 DHLERGTLEASHISYLVIDEADEMLRMGFIDQVES----------IIAALPLNRVTLLFS 181

Query: 439 SLGDIDISKITEKPAGRKP----IKTVIIPINRIDEVI----ERLKVVLSEGKKAYWICP 490
           +     I ++ EK   R P    I T +   N I+E+     E+ K+ + E   A  I  
Sbjct: 182 ATMAPHIQQLCEKYL-RTPKTIHITTDLSKPNNIEEIGIETHEQTKLAVLE---AVTIVE 237

Query: 491 QIEE-----KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             E       ++     V +R N L+      +  IHG M    + +VM+ F+ G  + L
Sbjct: 238 NPESCIIFCNRKERVEMVWKRLNDLN----YGVGKIHGDMEQKQRFAVMEDFRKGRFRYL 293

Query: 546 IATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           +AT V   GID+   + +I     E AE++    +H++ GR GR        +   P   
Sbjct: 294 VATDVAARGIDIDHITHVINFDVPEQAENY----VHRM-GRTGRAGRSGKTFIFIQPEDK 348

Query: 602 KN-----SYT 606
           +N     SYT
Sbjct: 349 RNLAVIESYT 358


>gi|15601743|ref|NP_233374.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|153821094|ref|ZP_01973761.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae B33]
 gi|254850153|ref|ZP_05239503.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|9658432|gb|AAF96886.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126521468|gb|EAZ78691.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae B33]
 gi|254845858|gb|EET24272.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
          Length = 428

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 116/271 (42%), Gaps = 25/271 (9%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E +        +    + G
Sbjct: 66  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCG 125

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +  ++ AL        +I++ T      L Q  ++  ++  +++DE  R        
Sbjct: 126 GVDKTEQQNALAE----NPNILVATTGRLFDLTQSGLRLNRVTTLVLDEADR-------- 173

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 174 LLDMGFWPQVQALASQTAGVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAV 233

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +     ++HG  S
Sbjct: 234 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKS 293

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             ++E+ +  FKNGT ++LIAT ++  GI +
Sbjct: 294 QSEREAALAEFKNGTTQVLIATDLLARGIHI 324


>gi|308496371|ref|XP_003110373.1| hypothetical protein CRE_05393 [Caenorhabditis remanei]
 gi|308243714|gb|EFO87666.1| hypothetical protein CRE_05393 [Caenorhabditis remanei]
          Length = 994

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 128/279 (45%), Gaps = 56/279 (20%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I++P   LA Q Y+ ++ ++++T+I V +  G   Q  R  +LE I +G  H+++GT 
Sbjct: 474 ALILSPTRELASQIYDSLRLFSRDTRIKVCLSYG---QQSRSNSLEEIRNG-CHVLVGTC 529

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA---------T 429
               D      I   +L  +++DE  R        L Q+A+   V  M+          T
Sbjct: 530 GRIMDLVEKGDISMCELRFLVLDEADR--------LLQEASRDPVGHMSRILDDREFKRT 581

Query: 430 PIPRTLVLTSLG-DIDISKITEKPAGRKPIKTVIIPI--------NRID----------E 470
              R  ++TS   D ++  + +    + P ++  + I        NR++          E
Sbjct: 582 SETRQTIMTSATFDRNVEAVAQTLMKKLPNESDFVKIVLTNSRLSNRVNLVFHETYGLSE 641

Query: 471 VIERLKVVLSEGKKAYWICPQ----IEEKKESNFRSV-VERFNSLHEHFTSSIAIIHGRM 525
            ++++K +LSE    +   P+    +++KK  +F ++ V ++ +L    T     +HG  
Sbjct: 642 KMKKMKEILSE-LNQHGEAPKTLIFVQKKKTCDFLAIRVAQYGNLIRSQT-----LHGDR 695

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           S   ++  ++ FK G   +++ T V+  GIDV D   +I
Sbjct: 696 SQDKRDQYINEFKTGKLNVMVTTDVLSRGIDVTDLERVI 734


>gi|297830638|ref|XP_002883201.1| hypothetical protein ARALYDRAFT_479492 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329041|gb|EFH59460.1| hypothetical protein ARALYDRAFT_479492 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 408

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 142/336 (42%), Gaps = 49/336 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  Q+ A+  ILQ          I Q   G+GKT +  +++   V+      QA+I++P
Sbjct: 58  PSAIQQRAVMPILQGRDV------IAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSP 111

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  + I+    +  I      G        + LE   HG  H++ GT     D 
Sbjct: 112 TRELATQTEKTIQAIGLHANIQAHACIGGKSVGEDIRKLE---HG-VHVVSGTPGRVCDM 167

Query: 389 ----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
               S++   + L+I+DE       G + ++    +   P   V L++AT     L +TS
Sbjct: 168 IKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTS 227

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW----ICPQIEEK 495
                  K   +P        V I + R +  +E +K      +K  W    +C   +  
Sbjct: 228 -------KFMTEP--------VKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL 272

Query: 496 KESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +    F +   + + L E   S   +++ +HG M   +++ +M+ F++G  ++LI T 
Sbjct: 273 TITQAVIFCNTKRKVDYLSEKMRSNNFTVSSMHGDMPQKERDEIMNQFRSGESRVLITTD 332

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           V   GIDV   S++I  +  +     +H++ GR GR
Sbjct: 333 VWARGIDVQQVSLVINYDLPNNRELYIHRI-GRSGR 367


>gi|149913402|ref|ZP_01901935.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. AzwK-3b]
 gi|149812522|gb|EDM72351.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. AzwK-3b]
          Length = 662

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 142/341 (41%), Gaps = 51/341 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKTL   +A+A  +          A   A+++AP   LA Q   E    + Q
Sbjct: 35  LVSAQTGSGKTLGFGLAIAPGLFGEAESFGPAAAPLALVIAPTRELALQVKRELAWLFGQ 94

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVD 401
              ++   + G M     R+ALER     AHI++ T    +D     SI    L  V++D
Sbjct: 95  ANAVLASTV-GGMDMRDERRALER----GAHIVVATPGRLRDHIMRGSIDLSALKAVVLD 149

Query: 402 EQHR---FGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKIT---EKPAG 454
           E       G ++ L+           ++   PI R TL+ ++     I+K+    +K A 
Sbjct: 150 EADEMLDLGFREDLEF----------ILEQAPIERQTLLFSATVPAAIAKLASNYQKDAI 199

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKA------YWICPQIEEKKESNFRSVVERFN 508
           R  I T        D     L V   + + A      Y+  P        N R++V R  
Sbjct: 200 R--ISTASGTTQHADIEYRALNVSARDAENAIINVLRYYEAPNA--IVFCNTRAMVNRLT 255

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +   + + S+  + G +S  ++   + + ++G  ++ +AT V   GID+ +  ++I    
Sbjct: 256 TRLSNRSFSVVALSGELSQSERTHALQAMRDGRARVCVATDVAARGIDLPNLELVIHAEL 315

Query: 569 EHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRL 608
                  LH+  GR GR G +  S +++  PP ++    RL
Sbjct: 316 PTNQDTLLHR-SGRTGRAGRKGVSALIV--PPAARKKAQRL 353


>gi|119500728|ref|XP_001267121.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
 gi|143359899|sp|A1CX72|PRP28_NEOFI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|119415286|gb|EAW25224.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
          Length = 796

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 125/294 (42%), Gaps = 37/294 (12%)

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+++AP   LAQQ     +K+TQ     V  I G      +  +L       A III
Sbjct: 442 GPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSL----RNGAEIII 497

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQ-------RLKLTQKA----TAP 421
            T     D I+   L+L     VI+DE  R    G ++        L +T +      A 
Sbjct: 498 ATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAE 557

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           +   M +    +T++ T+     + +I  K   R  I T+      +D V +R++++  E
Sbjct: 558 NSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEMIAGE 617

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----------SIAIIHGRMSDIDKE 531
            K+   +   +       FR  +  F ++  +  +          S   +HG  +   +E
Sbjct: 618 DKRKKRLADIL---SSGEFRPPIIVFVNIKRNCDAIAREIKQMGFSSVTLHGSKTQEQRE 674

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           + + S +NG+  +L+AT +   GIDV D S+++  N  +   +  H++ GR GR
Sbjct: 675 AALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRI-GRTGR 727


>gi|317140737|ref|XP_001818384.2| ATP-dependent RNA helicase eIF4A [Aspergillus oryzae RIB40]
          Length = 397

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 141/326 (43%), Gaps = 70/326 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+ AIK I++          I Q   G+GKT    I+    ++    G QA+I+AP
Sbjct: 47  PSAIQQRAIKPIIKGSD------VIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAP 100

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA-HIIIGTHALFQD 388
              LAQQ  + +        I      G        KAL     G+   +++GT     D
Sbjct: 101 TRELAQQIQKVVVAIGDFMNITCHACIGGTAVREDMKAL-----GEGPEVVVGTPGRVHD 155

Query: 389 SIQ--------YYKLILVIVDEQHRFGVQQRL----KLTQKATAPHVLLMTATPIPRTLV 436
            IQ          + IL   DE    G  +++    +L  ++T   V+L++AT +P+   
Sbjct: 156 MIQRRVLKTDHLKQFILDEADEMLSRGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ--- 209

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                  D+ ++T K   R P++ ++          ++ ++ L EG K ++I  + EE K
Sbjct: 210 -------DVLEVTTKFM-RDPVRILV----------KKQELTL-EGIKQFYIAVEKEEWK 250

Query: 497 ESNFRSVVE---------------RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFK 538
                 + E               + + L +  T+   +++ +HG M    ++ +M  F+
Sbjct: 251 LDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFR 310

Query: 539 NGTCKLLIATTVIEVGIDVVDASIII 564
           +G+ ++LIAT ++  GIDV   S++I
Sbjct: 311 SGSSRVLIATDLLARGIDVQQVSLVI 336


>gi|153821037|ref|ZP_01973704.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae B33]
 gi|255746274|ref|ZP_05420221.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|126521411|gb|EAZ78634.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae B33]
 gi|255736028|gb|EET91426.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
          Length = 406

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 116/271 (42%), Gaps = 25/271 (9%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E +        +    + G
Sbjct: 44  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCG 103

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +  ++ AL        +I++ T      L Q  ++  ++  +++DE  R        
Sbjct: 104 GVDKTEQQNALAE----NPNILVATTGRLFDLTQSGLRLNRVTTLVLDEADR-------- 151

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 152 LLDMGFWPQVQALASQTAGVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAV 211

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +     ++HG  S
Sbjct: 212 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKS 271

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             ++E+ +  FKNGT ++LIAT ++  GI +
Sbjct: 272 QSEREAALAEFKNGTTQVLIATDLLARGIHI 302


>gi|113971825|ref|YP_735618.1| primosomal protein N' [Shewanella sp. MR-4]
 gi|113886509|gb|ABI40561.1| primosomal protein N' [Shewanella sp. MR-4]
          Length = 736

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 22/215 (10%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L   P    K Q  A+  + Q   Q+     +L+G  GSGKT V L  +   ++ G QA+
Sbjct: 200 LDEAPHRLNKEQAVAVTLLTQ---QQGYHCTLLEGITGSGKTEVYLAVLEHILKQGKQAL 256

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           I+ P IG+  Q    F +++  N  ++   +T N     R +A  +   GQA IIIGT +
Sbjct: 257 ILVPEIGLTPQTINRFKRRFKVNVAVLHSGLTDN----QRLEAWRQARCGQAAIIIGTRS 312

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-----------TAPHVLLMTATPIPR 433
                + +  +I  I+DE+H    +Q+  +   A           + P V+L +ATP   
Sbjct: 313 ALFTPMAFPGVI--ILDEEHDSSFKQQEGVGYHARDLAVMRGHLESIP-VILGSATPSLE 369

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           TL     G     ++ E+    K ++  II I  +
Sbjct: 370 TLQNALSGRYHHLQLGERAGNAKKVRQGIIDIKNL 404


>gi|307726081|ref|YP_003909294.1| ATP-dependent DNA helicase, RecQ family [Burkholderia sp. CCGE1003]
 gi|307586606|gb|ADN60003.1| ATP-dependent DNA helicase, RecQ family [Burkholderia sp. CCGE1003]
          Length = 582

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 136/334 (40%), Gaps = 66/334 (19%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G+GK+L   +    A+   G  ++++P I ++  Q  + +        I   ++   + 
Sbjct: 46  TGAGKSLCYQLP---ALHLEGTTLVVSPLIALMKDQADKLLA-----AGIDCTLVNSTLK 97

Query: 361 QAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYY---KLILVIVDEQH---RFGVQ 409
               R+AL+RIA G + I+  T        F ++++     ++ LV+VDE H    +G  
Sbjct: 98  SRAEREALQRIAAGDSGIVFVTPERLAQPAFIETLRSRPENRVGLVVVDEAHCVSHWGHD 157

Query: 410 QRLKLTQKATA------PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            R    + A A      P VL +TAT  PR           I  I    A R+P + V  
Sbjct: 158 FRPAFLEIAAAVKLLGQPPVLALTATATPRV----------IDDIVRSLALREP-RVVRT 206

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-----------------SNFRSVVER 506
              R +     ++V  + GK        +  K+E                 +  R V   
Sbjct: 207 GTYRENLHYRVVQVSTAGGKDG--AARAMAAKREQLSTLIASLAGTGIVYAATVRDVDRI 264

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           +  L E    S++  HGRM+   +E   + F +G  +L++AT    +GID  D   +I  
Sbjct: 265 YGWLAEA-GESVSRYHGRMAAAAREQAQEQFMSGATRLMVATNAFGMGIDKADIRFVI-- 321

Query: 567 NAEHF----GLAQLHQLRGRVGRGEEISSCILLY 596
              H+     L   +Q  GR GR  E + C+LL+
Sbjct: 322 ---HYHIPGSLDAYYQETGRAGRDGEPADCVLLF 352


>gi|238484739|ref|XP_002373608.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           flavus NRRL3357]
 gi|220701658|gb|EED57996.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           flavus NRRL3357]
          Length = 439

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 141/326 (43%), Gaps = 70/326 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+ AIK I++          I Q   G+GKT    I+    ++    G QA+I+AP
Sbjct: 47  PSAIQQRAIKPIIKGSD------VIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAP 100

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA-HIIIGTHALFQD 388
              LAQQ  + +        I      G        KAL     G+   +++GT     D
Sbjct: 101 TRELAQQIQKVVVAIGDFMNITCHACIGGTAVREDMKAL-----GEGPEVVVGTPGRVHD 155

Query: 389 SIQ--------YYKLILVIVDEQHRFGVQQRL----KLTQKATAPHVLLMTATPIPRTLV 436
            IQ          + IL   DE    G  +++    +L  ++T   V+L++AT +P+   
Sbjct: 156 MIQRRVLKTDHLKQFILDEADEMLSRGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ--- 209

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                  D+ ++T K   R P++ ++          ++ ++ L EG K ++I  + EE K
Sbjct: 210 -------DVLEVTTKFM-RDPVRILV----------KKQELTL-EGIKQFYIAVEKEEWK 250

Query: 497 ESNFRSVVE---------------RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFK 538
                 + E               + + L +  T+   +++ +HG M    ++ +M  F+
Sbjct: 251 LDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFR 310

Query: 539 NGTCKLLIATTVIEVGIDVVDASIII 564
           +G+ ++LIAT ++  GIDV   S++I
Sbjct: 311 SGSSRVLIATDLLARGIDVQQVSLVI 336


>gi|319951788|ref|YP_004163055.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319420448|gb|ADV47557.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 429

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 126/286 (44%), Gaps = 29/286 (10%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LA Q  E    Y + T I   +I G + Q  +  AL +       I+I T
Sbjct: 76  KALVVTPTRELAIQIGESFTAYARFTGIKNTVIFGGVKQGKQTDALRQ----GVEILIAT 131

Query: 383 HA-----LFQDSIQYYKLILVIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATPIPR 433
                  + Q  I    L  V++DE  +      +    K+  K  A    L  +  +P+
Sbjct: 132 PGRLLDLMNQGFISLRDLEYVVLDEADQMLDMGFIHDVKKIIAKLPAKRQSLFFSATMPK 191

Query: 434 TLVLTS---LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           T+V  S   LG+ +   I  + A  + ++  I  + + D+V  +L V L E K+A  +  
Sbjct: 192 TIVELSQKILGEFEQVTIKPEQATAEKVEQAIYFVPKGDKV--KLLVHLIETKEAKAVLV 249

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
               K  +N      +   L +    + A IHG  S   +++ ++ FK+G   +L+AT +
Sbjct: 250 FSRTKHGAN------KIVKLLDKAGINAAAIHGNKSQTARQNALNDFKDGKLTVLVATDI 303

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
              GID+ D S+++  +  +     +H++ GR GR    G  +S C
Sbjct: 304 AARGIDIDDLSLVVNYDLPNVPETYVHRI-GRTGRANASGVALSFC 348


>gi|315171197|gb|EFU15214.1| primosomal protein [Enterococcus faecalis TX1342]
          Length = 810

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++IVDE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIVDEEHEASYKQ 405


>gi|288928387|ref|ZP_06422234.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288331221|gb|EFC69805.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 447

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 149/349 (42%), Gaps = 52/349 (14%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I  IL+       +L + Q   G+GKT   L+ + + ++ GG        +IM
Sbjct: 25  TPIQEHCIPQILEGKD----ILGVAQ--TGTGKTAAYLLPIMSMLDDGGFPHDAINCIIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +P   LAQQ  + ++ +      +  + I G        + ++ +  G A III T   F
Sbjct: 79  SPTRELAQQIDQAMQGFGYYLDSVSSLPIYGGNDGNRYDQEIKSLRLG-ADIIIATPGRF 137

Query: 387 QDSIQY-----YKLILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPR--T 434
              IQ       K+   ++DE  R    G  + +    K   P    ++ +AT  P+   
Sbjct: 138 ISHIQLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKQLPPTCQTIMFSATMPPKIEQ 197

Query: 435 LVLTSLGD-IDISKITEKPAGRKPIKTVIIPINRIDEVIERL-------KVVLSEGKKAY 486
           L  T L + ++I     KPA +   K  +    +  +V+E +       +V++  GKK  
Sbjct: 198 LAKTLLKNPVEIKLAVSKPAEKIAQKAYLCYEPQKLKVLEDIFKAGHLNRVIIFSGKK-- 255

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                 ++ KE N   V  + NS           +H  +S  +++ VM  FK+G   +L+
Sbjct: 256 ------QKVKEINRALVRMKINSDE---------MHSDLSQEERDQVMFKFKSGATDVLV 300

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           AT ++  GID+ D +++I  +  H     +H++ GR  R E     I L
Sbjct: 301 ATDILSRGIDIDDITMVINYDVPHDVEDYVHRI-GRTARAERDGVAITL 348


>gi|317127874|ref|YP_004094156.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315472822|gb|ADU29425.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 481

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 130/327 (39%), Gaps = 38/327 (11%)

Query: 292 NRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           N+   +++   GSGKT    + +  M    E   QA+I+ P   LA Q  E I    +  
Sbjct: 40  NKEDLVVKSQTGSGKTAAFGIPICEMMNWEERKPQALILTPTRELAVQVREDIANIGRFK 99

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILV 398
            I    + G  P A +++ L++    + H+++GT            L  D I+Y  LIL 
Sbjct: 100 LIKALAVYGKEPFAKQKEELKQ----RNHVVVGTPGRMLDHIERETLALDEIKY--LILD 153

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKP 457
             DE    G    ++           +M A P  R T+V ++    D+  +  K     P
Sbjct: 154 EADEMLNMGFINDVEE----------IMKALPADRVTMVFSATLPKDVEDLCHKYM-ENP 202

Query: 458 IKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLH 511
               I         IE  L  V  +GK A      + E  +S     N +  V+   S  
Sbjct: 203 QHIEIASSGITTASIEHHLMEVNPKGKLALLKDITVVENPDSCIIFCNTKEHVDTVFSEL 262

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E    S   +HG +   D+ SVMD FK G  + L+AT V   GIDV + +++I  +    
Sbjct: 263 ERANYSCEKLHGGLEQEDRFSVMDGFKRGNFRYLVATDVAARGIDVDNVTLVINYDVPME 322

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHP 598
               +H+  GR GR       I    P
Sbjct: 323 KEGYVHRT-GRTGRSGNKGRAITFVTP 348


>gi|320009868|gb|ADW04718.1| DEAD/DEAH box helicase domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 522

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 130/318 (40%), Gaps = 33/318 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  +   A+++ P   LAQQ  + +  Y ++ ++ +
Sbjct: 124 RGRTGSGKTLAFGLALLARTAGNRADARRPLALVLVPTRELAQQVTDALTPYARSLRLRL 183

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFG 407
             + G M    +  AL     G A +++ T    +D I+       ++ + ++DE     
Sbjct: 184 ATVVGGMSIGRQASALR----GGAEVVVATPGRLKDLIERGDCKLDRVAITVLDEAD--- 236

Query: 408 VQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                ++      P V  LL    P  + ++ ++  D ++  +  +     P+   + P 
Sbjct: 237 -----QMADMGFMPQVTELLDQVNPEGQRMLFSATLDRNVDLLVRRYL-HDPVVHSVDPA 290

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--NFRSVVERFNSLHEHFTSS---IAI 520
                 +E   V+  +G   Y    +I  +      F       + L +H  SS    A 
Sbjct: 291 AGAVTTMEH-HVLYVQGADKYATTTEIAARDGRVIMFLDTKHAVDKLTDHLLSSGVRAAA 349

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG  S   +   +D FK G   +L+AT V   GI V +  +++  +        LH+  
Sbjct: 350 LHGGKSQPQRTRTLDRFKTGHVTVLVATNVAARGIHVDNLDLVVNVDPPSDHKDYLHR-G 408

Query: 581 GRVGRGEEISSCILLYHP 598
           GR  R  E  S + L  P
Sbjct: 409 GRTARAGESGSVVTLVLP 426


>gi|168053931|ref|XP_001779387.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669185|gb|EDQ55777.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 741

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 125/310 (40%), Gaps = 43/310 (13%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   ++ M   +          G   VI AP   LAQQ Y   KK+ +   I + 
Sbjct: 280 TGSGKTAAFVLPMMVHIMDQPELGKGEGPIGVICAPTRELAQQIYSEAKKFAKVHGIRIS 339

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G M +  + K L+        +++ T     D I+   L +     +++DE  R   
Sbjct: 340 GVYGGMSKFEQFKELK----AGCEVVVATPGRLIDMIKMKALSMHRATYLVLDEADRMFD 395

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             F  Q R  + Q       LL +AT   R   L          +T+      PI+  + 
Sbjct: 396 LGFEPQIRSIVGQIRPDRQTLLFSATMPKRVERLAR------EILTD------PIRVTVG 443

Query: 464 PINRIDEVIERLKVVL-SEGKKAYWIC----PQIEEKKESNFRSVVERFNSLHEHFTSS- 517
            I   +E I ++  VL S+ +K  W+     P +++     F S   R   L    + + 
Sbjct: 444 EIGSANEDITQVVTVLPSDAEKTPWLLDRLQPFVDDGDVLVFASTKLRVEELEGKISEAG 503

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +A +HG      +  V+  FKNG   +L+AT V   G+D+     ++  +      + 
Sbjct: 504 FKVAALHGDKDQATRMEVLQKFKNGIYHILVATDVAARGLDIKSIKTVVNVDIARDMDSH 563

Query: 576 LHQLRGRVGR 585
           +H++ GR GR
Sbjct: 564 VHRI-GRTGR 572


>gi|114045967|ref|YP_736517.1| primosomal protein N' [Shewanella sp. MR-7]
 gi|113887409|gb|ABI41460.1| primosomal protein N' [Shewanella sp. MR-7]
          Length = 736

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 22/215 (10%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L   P    K Q  A+  + Q   Q+     +L+G  GSGKT V L  +   ++ G QA+
Sbjct: 200 LDEAPHRLNKEQAVAVTLLTQ---QQGYHCTLLEGITGSGKTEVYLAVLEHILKQGKQAL 256

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           I+ P IG+  Q    F +++  N  ++   +T N     R +A  +   GQA IIIGT +
Sbjct: 257 ILVPEIGLTPQTINRFKRRFKVNVAVLHSGLTDN----QRLEAWRQARCGQAAIIIGTRS 312

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-----------TAPHVLLMTATPIPR 433
                + +  +I  I+DE+H    +Q+  +   A           + P V+L +ATP   
Sbjct: 313 ALFTPMAFPGVI--ILDEEHDSSFKQQEGVGYHARDLAVMRGHLESIP-VILGSATPSLE 369

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           TL     G     ++ E+    K ++  II I  +
Sbjct: 370 TLQNALSGRYHHLQLGERAGNAKKVRQGIIDIKNL 404


>gi|307822012|ref|ZP_07652244.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307736578|gb|EFO07423.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 444

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 143/326 (43%), Gaps = 47/326 (14%)

Query: 297 ILQGDVGSGKTLVALIA------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           ++  + GSGKT   L+          + ++G +A+I+ P   LAQQ ++  ++ T+ T +
Sbjct: 51  LVSAETGSGKTAAFLLPALHHLLTLPSGKSGVRALILTPTRELAQQIFKHCQQLTEFTDL 110

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHR 405
              +ITG      ++  L R       I+I T       + Q+   +  L ++I+DE  R
Sbjct: 111 KTGLITGGDDFRLQQNMLRR----NTEIVIATPGRVLELMEQEIPDFSNLEVLILDEADR 166

Query: 406 F---GVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
               G  + +     +  T    LL +AT       LT  G I       K A R     
Sbjct: 167 MLDMGFSEDVLTIANSCNTQRQTLLFSAT-------LTHFGVI-------KMADRVLKNH 212

Query: 461 VIIPINRIDE---VIERLKVVLSEG-----KKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            ++ +N + +    IE+ ++VL++      K   W+       K   F +   + ++L  
Sbjct: 213 EVVALNTLHDGHRNIEQ-QIVLADDNDHKLKLLIWLLQNETYDKALVFTNSRIQADALRG 271

Query: 513 HFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                   + ++HG M   D+  +M+ F+ G  K+++AT +   G+D+   +++I  +  
Sbjct: 272 PLRGQKLRVGVLHGEMDQKDRNRMMELFREGEVKIMLATDLAARGLDIKGINLVINFDVP 331

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILL 595
             G+  +H++ GR GR +E+   I L
Sbjct: 332 RNGINYIHRI-GRTGRVDELGLTIAL 356


>gi|15902714|ref|NP_358264.1| ATP-dependent RNA helicase [Streptococcus pneumoniae R6]
 gi|116516888|ref|YP_816157.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae D39]
 gi|168492910|ref|ZP_02717053.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC3059-06]
 gi|182683681|ref|YP_001835428.1| DEAD-box ATP dependent DNA helicase [Streptococcus pneumoniae
           CGSP14]
 gi|221231556|ref|YP_002510708.1| helicase [Streptococcus pneumoniae ATCC 700669]
 gi|303260226|ref|ZP_07346197.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|303264099|ref|ZP_07350020.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS397]
 gi|15458257|gb|AAK99474.1| ATP-dependent RNA helicase [Streptococcus pneumoniae R6]
 gi|116077464|gb|ABJ55184.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae D39]
 gi|182629015|gb|ACB89963.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae CGSP14]
 gi|183576996|gb|EDT97524.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC3059-06]
 gi|220674016|emb|CAR68529.1| putative helicase [Streptococcus pneumoniae ATCC 700669]
 gi|302638550|gb|EFL69014.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|302646504|gb|EFL76730.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS397]
          Length = 447

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 153/352 (43%), Gaps = 38/352 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + F+ PT+ Q+  I  +L       R L + +   GSGKT   L+ +   ++     
Sbjct: 16  LKELKFTTPTEVQDKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDEASDS 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHII 379
            QAVI AP   LA Q Y+  ++ + ++ + V ++   G   +A   + +E++   Q HI+
Sbjct: 70  VQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKA---RQIEKLESNQPHIV 126

Query: 380 IGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTAT 429
           IGT     D ++      +K    +VDE         L+   K           ++ +AT
Sbjct: 127 IGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSAT 186

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            IP+ L         + K    P   K IKT  +  + ID  +   K    +  + Y + 
Sbjct: 187 -IPQKLQPF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-HDKNAQIYQLT 237

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             ++      F +   R + LH + T+    +A IHG ++  +++ +M+  +N   + ++
Sbjct: 238 QLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 298 ATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|319780673|ref|YP_004140149.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317166561|gb|ADV10099.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 624

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 127/318 (39%), Gaps = 48/318 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ------------AVIMAPIGILAQQHYEFIKKY 344
           ++    GSGKT+   +A+A  +  G +                  + +   +  E++ + 
Sbjct: 41  LVSAQTGSGKTVAFGLALAPTLLEGAERFGYAAAPLALAVAPTRELALQVTRELEWLYEL 100

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------I 396
           T  T   V    G M     R+ LER     AHI++GT    +D I    L        +
Sbjct: 101 TGAT---VASCVGGMDMRSERRVLER----GAHIVVGTPGRLRDHITRRSLDMSALKAVV 153

Query: 397 LVIVDEQHRFGVQQRLK-LTQKATAPHVLLMTATPIPRTLVLTSLG-DIDISKITEKPAG 454
           L   DE    G ++ L+ +   A A    LM +  +PR++   + G   D  +I+     
Sbjct: 154 LDEADEMLDLGFREDLEFILDAAPAERRTLMFSATVPRSIATLAQGYQRDAVRISAAGEE 213

Query: 455 RKPIK------TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           ++ +       +V  P +R + +I  L+    E K A   C         N R+ V    
Sbjct: 214 KQHLDIEYRALSVAQP-DRENAIINVLRYY--EAKNALVFC---------NTRAAVNHLT 261

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +   +   S+  + G +S  ++   + + ++G  K+ IAT V   GID+ +  ++I  + 
Sbjct: 262 ARFNNRNFSVVALSGELSQNERSHALQAMRDGRAKVCIATDVAARGIDLPNLELVIHADL 321

Query: 569 EHFGLAQLHQLRGRVGRG 586
                  LH+  GR GR 
Sbjct: 322 PTNPETLLHR-SGRTGRA 338


>gi|312953220|ref|ZP_07772066.1| primosomal protein [Enterococcus faecalis TX0102]
 gi|310628837|gb|EFQ12120.1| primosomal protein [Enterococcus faecalis TX0102]
 gi|315152789|gb|EFT96805.1| primosomal protein [Enterococcus faecalis TX0031]
 gi|315159376|gb|EFU03393.1| primosomal protein [Enterococcus faecalis TX0312]
          Length = 810

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++IVDE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIVDEEHEASYKQ 405


>gi|297845068|ref|XP_002890415.1| hypothetical protein ARALYDRAFT_472328 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336257|gb|EFH66674.1| hypothetical protein ARALYDRAFT_472328 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 827

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 154/371 (41%), Gaps = 58/371 (15%)

Query: 302 VGSGKTLVALIAM------AAAVEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++ M         VEAG   +  +MAP   L QQ +  I+K+++   I   
Sbjct: 237 TGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCV 296

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G    A +   L+R       I++ T     D +           ++  +++DE  R
Sbjct: 297 PVYGGSGVAQQISELKR----GTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADR 352

Query: 406 F---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKP-----AGR 455
               G + ++    +   P    +L +AT  PR +   +       K+  KP      GR
Sbjct: 353 MFDMGFEPQITRIIQNIRPERQTVLFSAT-FPRQVETLA------RKVLNKPVEIQVGGR 405

Query: 456 KPIKTVIIPI-------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             +   I  +       +R   ++E L     +GK   ++  Q +EK ++ +R +++   
Sbjct: 406 SVVNKDITQLVEVRPESDRFFRLLELLGEWYEKGKILVFV--QSQEKCDALYRDMIKS-- 461

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                 +     +HG     D+ES +  FK+  C LLIAT+V   G+DV +  +++  +A
Sbjct: 462 ------SYPCLSLHGGKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVVNFDA 515

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
            +     +H++ GR GR       +       +K +   +  L+ +E       +DLK  
Sbjct: 516 PNHYEDYVHRV-GRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQ---PVPDDLKAL 571

Query: 629 KEGEILGIKQS 639
            +G +  +KQ 
Sbjct: 572 ADGFMAKVKQG 582


>gi|118097584|ref|XP_414629.2| PREDICTED: similar to Prp5-like DEAD-box protein [Gallus gallus]
          Length = 1043

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 133/312 (42%), Gaps = 43/312 (13%)

Query: 302 VGSGKTLVALIAM------AAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+  L+ M        A+E G    AVIM P   LA Q  +  KK+++   + V 
Sbjct: 422 TGSGKTIAFLLPMFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVV 481

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G    + +   L+R     A II+ T     D +           ++  V++DE  R
Sbjct: 482 CVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADR 537

Query: 406 F---GVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
               G + Q +++          +M +   PR   + +L    +SK         PI+  
Sbjct: 538 MFDMGFEPQVMRIVDNVRPDRQTVMFSATFPR--AMEALARRILSK---------PIEVQ 586

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS 517
           +   + +   +E+  +V+ E  K   +   +   +E      F    E  + L +    +
Sbjct: 587 VGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHYQEKGSVIIFVDKQEHADGLLKDLMRA 646

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +    
Sbjct: 647 SYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYED 706

Query: 575 QLHQLRGRVGRG 586
            +H+  GR GR 
Sbjct: 707 YVHRA-GRTGRA 717


>gi|84998580|ref|XP_954011.1| eukaryotic translation initiation factor [Theileria annulata]
 gi|65305009|emb|CAI73334.1| eukaryotic translation initiation factor, putative [Theileria
           annulata]
          Length = 394

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 143/335 (42%), Gaps = 47/335 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK IL+          I+Q   G+GKT V  +     V +     Q ++++P
Sbjct: 44  PSAVQQRAIKPILEGRDV------IIQSQSGTGKTCVFCLGALQTVNSNVRETQVLLLSP 97

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE---RIAHGQ----AHIIIGT 382
              LA+Q  +          + V    G    +   KALE   +I  G      H+I   
Sbjct: 98  TRELAEQSQKVCLALGDYCNVEVHCCIGGKKVSDDIKALESGVQIVSGTPGRVNHMITDR 157

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSL 440
           H    ++    +LIL   DE    G ++++    +   P   V+L++AT +P        
Sbjct: 158 HL---NTRNIKQLILDEADEMLNRGFKEQVYSVYRYLPPTIQVVLVSAT-LPH------- 206

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW----ICPQIEE-- 494
              D+ +IT K     P K ++    R +  +E +K      +K  W    +C   E   
Sbjct: 207 ---DVIEITNKFMN-NPFKVLV---KRDELTLEGIKQFFISVEKEQWKFDTLCDLYESLI 259

Query: 495 -KKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             +   F +  E+ + L +    +   ++ +HG MS  ++  +M  F+ G  ++LI+T +
Sbjct: 260 ITQAVIFCNTKEKVDWLAKKMKDANFEVSKMHGEMSQKERNDIMQRFRKGESRVLISTDL 319

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              G+DV   S+++  +  +   + +H++ GR GR
Sbjct: 320 WGRGLDVQQVSLVVNYDLPNSRESYIHRI-GRSGR 353


>gi|71033289|ref|XP_766286.1| eukaryotic translation initiation factor 4A [Theileria parva strain
           Muguga]
 gi|68353243|gb|EAN34003.1| eukaryotic translation initiation factor 4A, putative [Theileria
           parva]
          Length = 394

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 141/335 (42%), Gaps = 47/335 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK IL+          I+Q   G+GKT V  +     V +     Q ++++P
Sbjct: 44  PSAVQQRAIKPILEGRDV------IIQSQSGTGKTCVFCLGALQTVNSNVRETQVLLLSP 97

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE---RIAHGQ----AHIIIGT 382
              LA+Q  +          I V    G    +   KALE   +I  G      H+I   
Sbjct: 98  TRELAEQSQKVCLALGDYCNIEVHCCIGGKKVSDDIKALESGVQIVSGTPGRVNHMITDR 157

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSL 440
           H    ++    +LIL   DE    G ++++    +   P   V+L++AT +P        
Sbjct: 158 HL---NTRNIKQLILDEADEMLNRGFKEQVYSVYRYLPPTIQVVLVSAT-LPH------- 206

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW----ICPQIEE-- 494
              D+ +IT K     P K ++    R +  +E +K      +K  W    +C   E   
Sbjct: 207 ---DVIEITNKFMN-NPFKVLV---KRDELTLEGIKQFFISVEKEQWKFDTLCDLYESLI 259

Query: 495 -KKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             +   F +  E+ + L +        +  +HG MS  ++  +M  F+ G  ++LI+T +
Sbjct: 260 ITQAVIFCNTKEKVDWLAKKMKDGNFEVCKMHGEMSQKERNDIMQRFRKGESRVLISTDL 319

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              G+DV   S+++  +  +   + +H++ GR GR
Sbjct: 320 WGRGLDVQQVSLVVNYDLPNSRESYIHRI-GRSGR 353


>gi|323479053|gb|ADX78492.1| primosomal protein N [Enterococcus faecalis 62]
          Length = 810

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++IVDE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIVDEEHEASYKQ 405


>gi|296421505|ref|XP_002840305.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636520|emb|CAZ84496.1| unnamed protein product [Tuber melanosporum]
          Length = 472

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 142/315 (45%), Gaps = 48/315 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AI  ++      NR + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 122 PSAIQQRAILPVI-----NNRDV-IAQAQSGTGKTATFSISVLQKIDLSVKQCQALILAP 175

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH------GQAHIIIGTH 383
              LAQQ  + +        +      G        K L+   H      G+ H +I   
Sbjct: 176 TRELAQQIQKVVVAIGDFMNVECHACIGGTVVREDMKILQDGVHVVVGTPGRVHDVIQRR 235

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTS 439
           AL  D+I+ +  +L   DE    G  +++    +L  ++T   V+L++AT +P+      
Sbjct: 236 ALKTDAIKLF--VLDEADEMLSRGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ------ 284

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D+ ++T K   R P++   I + + +  +E +K      +K  W    + +  E+ 
Sbjct: 285 ----DVLEVTTK-FMRDPVR---ILVKKAELTLEGIKQFYIAVEKEDWKLDTLSDLYETV 336

Query: 500 -------FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                  F +   + + L E  T+   +++ +HG M    ++ +M  F++G+ ++LIAT 
Sbjct: 337 TITQAVIFCNTRRKVDWLTEKLTARDFTVSAMHGDMDQHQRDLIMKEFRSGSSRVLIATD 396

Query: 550 VIEVGIDVVDASIII 564
           ++  GIDV   S++I
Sbjct: 397 LLARGIDVQQVSLVI 411


>gi|262191754|ref|ZP_06049928.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|262032393|gb|EEY50957.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
          Length = 406

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 118/278 (42%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E + +      +    + G
Sbjct: 44  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTQVGAPLGLNTLCLCG 103

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +  ++ AL        +I++ T      L Q  +   ++  +++DE  R        
Sbjct: 104 GVDKTEQQNALAE----NPNILVATTGRLFDLTQSGLSLNRVTTLVLDEADR-------- 151

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 152 LLDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAV 211

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ + S    F    E  +SL +    +      +HG  S
Sbjct: 212 QETLYLVNKGSKTQALVALLKQHQWSQVLVFIGAKENADSLTKKLNKAGIVATALHGDKS 271

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +E+ +  FK+GT ++LIAT ++  GI +    ++I
Sbjct: 272 QAQREAALAEFKDGTTQVLIATDLLARGIHIEQLPVVI 309


>gi|149185371|ref|ZP_01863688.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Erythrobacter sp. SD-21]
 gi|148831482|gb|EDL49916.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Erythrobacter sp. SD-21]
          Length = 820

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 136/329 (41%), Gaps = 57/329 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---EAGGQ------AVIMAPIGILAQ--QHYEFIKKYT 345
           +L  D G+GKTL   +   AA      GG+       + ++P+  LA   Q         
Sbjct: 39  LLVADTGAGKTLAGFLPTLAAFAPSRTGGEPPEGLHTLYVSPLKALAHDVQRNLLTPVQE 98

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL------FQDSIQYYK-LILV 398
               I VE  +G+ P   +R+   R      ++++ T         + DS + +  L  +
Sbjct: 99  MGLPITVETRSGDTPSDRKRRQRTR----PPNVLLTTPESLSLLLSYPDSFEMFAGLKRI 154

Query: 399 IVDEQHRFGVQQR-----LKLTQ-KATAPHV--LLMTAT---PIPRTLVLTSLGDIDISK 447
           ++DE H F   +R     L L++ +A AP +    ++AT   P      L   GD+D  +
Sbjct: 155 VIDEVHAFATGKRGDLLALALSRLQAIAPDMQRAALSATVAGPEGFREWLAPWGDLDSVE 214

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV--- 504
           + E   G      +++P        E  +V    G  A W  PQ+ E+   N  ++V   
Sbjct: 215 LVEGEEGAPAEVEILLP--------EEERVPWG-GHAATWAIPQLYEEIRQNNTTLVFTN 265

Query: 505 ERF--NSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            RF    + +H          I I HG +S   +  V  +   G  + L+AT  +++G+D
Sbjct: 266 TRFLAEYIFQHLWDVNEENLPIGIHHGSLSKEARRKVEGAMARGELRALVATASLDLGVD 325

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGR 585
             D  +++   A   G ++L Q   R+GR
Sbjct: 326 WGDIDLVVQMGAPK-GSSRLLQ---RIGR 350


>gi|221133360|ref|ZP_03559665.1| ATP-dependent RNA helicase SrmB [Glaciecola sp. HTCC2999]
          Length = 422

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 120/303 (39%), Gaps = 29/303 (9%)

Query: 302 VGSGKTLVALIAMAAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            G+GKT   L+  A  +           + +I++P   LA Q YE   + TQ+T I+  +
Sbjct: 46  TGTGKTAAFLLPAAQFLLDFPREYHGATRILILSPTRELAIQTYEHALEITQHTNIVCGV 105

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHA-LFQ----DSIQYYKLILVIVDEQHRFGVQ 409
           ITG +     R  L +       I++ T   LF+    +S     + ++I+DE  R    
Sbjct: 106 ITGGINYGTDRDTLAK----NLDILVATPGRLFEHIEKESFDCRDIEVMILDEADRM--- 158

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             L +  ++    +           L   +L    I++ + K     P    + P  +  
Sbjct: 159 --LDMGFRSIVNQIASEARWRKQSMLFSATLEGPGIAQFS-KDLLVNPESITVDPSRKEK 215

Query: 470 EVIERLKVVLSEGKKAYWICPQI-EEKKESN--FRSVVERFNSLHEHFTSS---IAIIHG 523
             I +   +  +    Y +   I  E+ ES   F    ER   L +   S    +  + G
Sbjct: 216 AKIHQWYHLADDASHKYQLLKHILSEQAESAIVFVKTRERLQQLKDRLASDDIDVCWLQG 275

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            M    +   M  FKNG  K+L+AT V   GIDV D S +I  +        LH++ GR 
Sbjct: 276 EMPQDKRNQAMSRFKNGEVKILLATDVAARGIDVDDISHVINFDMPRTSDVYLHRI-GRT 334

Query: 584 GRG 586
           GR 
Sbjct: 335 GRA 337


>gi|193606171|ref|XP_001946134.1| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
           [Acyrthosiphon pisum]
          Length = 641

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 161/392 (41%), Gaps = 69/392 (17%)

Query: 251 IGIPINV----EGKIAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           + +P N+    E  + + +L N+      +PT  Q+ AI  I+      N    I     
Sbjct: 215 MDVPKNITSFKESGLCEVLLSNLTECNYGNPTPIQKYAIPIIM------NGKDMIASAQT 268

Query: 303 GSGKT-------LVALIAMAAAV-----EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           GSGKT       L +LI+  + +         Q +I++P   LA Q   F  K +  T I
Sbjct: 269 GSGKTAAFVLPILNSLISEPSELVFDYNHCEPQCLILSPTRELASQISSFAFKLSNGTSI 328

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHR 405
               + G     H+R   E+I  G  HII+ T     D      I +  L  +++DE  R
Sbjct: 329 RCRALYGGTAVYHQR---EKILSG-VHIIVATPGRLIDFVNRGLITFSSLRFIVLDEADR 384

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE---KP---------- 452
                     Q   + + ++ +A     TL+ ++   ID+ +I +   KP          
Sbjct: 385 MLDMGFTPAIQCIFSDNTMVSSAER--STLMFSATLPIDVQQIAKSYLKPDYISVAVGEV 442

Query: 453 -AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               K +    + +N+  +  E L  +L+E          +E+K++++F   +  F S  
Sbjct: 443 GGACKDVTQTFVEVNKFSKKNE-LVALLNETNDCQGTIVFVEQKRQADF---IAAFLSEL 498

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            + T+SI   HG     ++E  +  FK    K+L+AT V   G+D++  + ++     +F
Sbjct: 499 NYPTTSI---HGDREQPEREKALRDFKTKKMKVLVATAVAARGLDIMGVTTVV-----NF 550

Query: 572 GLAQ-----LHQLRGRVGRGEEISSCILLYHP 598
            L +     +H++ GR GR       +  Y P
Sbjct: 551 DLPKTIEEYVHRI-GRTGRLGNSGRAVSFYDP 581


>gi|29377580|ref|NP_816734.1| primosomal protein n' [Enterococcus faecalis V583]
 gi|227554545|ref|ZP_03984592.1| primosomal replication protein n [Enterococcus faecalis HH22]
 gi|257417969|ref|ZP_05594963.1| primosomal protein N [Enterococcus faecalis T11]
 gi|29345047|gb|AAO82804.1| primosomal protein n' [Enterococcus faecalis V583]
 gi|227176343|gb|EEI57315.1| primosomal replication protein n [Enterococcus faecalis HH22]
 gi|257159797|gb|EEU89757.1| primosomal protein N [Enterococcus faecalis T11]
 gi|315573273|gb|EFU85464.1| primosomal protein [Enterococcus faecalis TX0309B]
 gi|315581153|gb|EFU93344.1| primosomal protein [Enterococcus faecalis TX0309A]
          Length = 810

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++IVDE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIVDEEHEASYKQ 405


>gi|194857377|ref|XP_001968940.1| GG25145 [Drosophila erecta]
 gi|190660807|gb|EDV57999.1| GG25145 [Drosophila erecta]
          Length = 512

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 157/380 (41%), Gaps = 61/380 (16%)

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS-----------QKNRM 294
            F K   IP+ V G+   K +RN        + + ++DI+++             QK  +
Sbjct: 72  NFSKYDNIPVKVSGENVPKAIRNF-------EHAQLRDIIRENVTKSGYKVPTPIQKVSI 124

Query: 295 LRILQG-------DVGSGKTLVALIAMAAAV-------EAGG-QAVIMAPIGILAQQHYE 339
             I+ G         GSGKT   L+ + + +       E G  QAVI++P   LA Q + 
Sbjct: 125 PVIVAGRDLMACAQTGSGKTAAFLVPILSKLLDDPQDLEIGKPQAVIVSPTRELAIQIFS 184

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYK 394
             +K+   + + + I+ G     H+ + + +      H++I T     D      I +  
Sbjct: 185 EARKFAFESYLKINIVYGGTSFKHQNECITK----GCHVLIATPGRLLDFVDRAFITFED 240

Query: 395 LILVIVDEQHR-----FGVQQRLKLTQKATAP-HVLLMTATPIP---RTLVLTSLGDIDI 445
              V++DE  R     F    R  +T     P H  LM +   P   + L    L +   
Sbjct: 241 TRFVVLDEADRMLDMGFSESMRKFMTHPTMRPEHQTLMFSATFPEEIQRLAGEFLNNYVF 300

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
             I         ++  I  +N+  +   +L  +L E      +   +E K+ ++F   + 
Sbjct: 301 VTIGVVGGACSDVQQTIYEVNKFAKR-SKLMEILREQADGTIVF--VETKRGADF---LA 354

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            F S  E  T+SI   HG      +E  +  FKNG+ K++IAT+V   G+D+ + + ++ 
Sbjct: 355 SFLSETEFPTTSI---HGDRLQSQREQALRDFKNGSMKVIIATSVAARGLDIKNINHVVN 411

Query: 566 ENAEHFGLAQLHQLRGRVGR 585
            +  +     +H++ GR GR
Sbjct: 412 FDMPNNIDDYVHRI-GRTGR 430


>gi|74354729|gb|AAI03319.1| DDX5 protein [Bos taurus]
          Length = 671

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 153/396 (38%), Gaps = 65/396 (16%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E   P NV   IA++        PT  Q       L  +     M+ + Q   GSGKTL 
Sbjct: 155 EANFPANVMDVIARQNFT----EPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLS 204

Query: 310 ALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L+     +          G   +++AP   LAQQ  +   +Y +  ++    I G  P+
Sbjct: 205 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 264

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ---- 409
             + + LER       I I T     D ++  K  L     +++DE  R    G +    
Sbjct: 265 GPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIR 320

Query: 410 --------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                    R  L   AT P  +   A    +  +  ++G +++S      A    ++ V
Sbjct: 321 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------ANHNILQIV 374

Query: 462 II--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517
            +   + + +++I  ++ ++SE           +E K   F     R + L         
Sbjct: 375 DVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELTRKMRRDGW 423

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  +  +     +
Sbjct: 424 PAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYI 483

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 484 HRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 518


>gi|332284754|ref|YP_004416665.1| ATP-dependent RNA helicase DbpA [Pusillimonas sp. T7-7]
 gi|330428707|gb|AEC20041.1| ATP-dependent RNA helicase DbpA [Pusillimonas sp. T7-7]
          Length = 444

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 139/320 (43%), Gaps = 34/320 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   GSGKT    + +   ++ G    QA+++ P   L++Q    +++  +    I V
Sbjct: 27  IAQAKTGSGKTAAFGLGIVHKLDPGAYNIQALVLCPTRELSEQVANELRRLARAIGNIKV 86

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHRFG 407
             + G  P    R  +E +  G AHI++GT         +D++ +  L  +++DE  R  
Sbjct: 87  ITLCGGTPI---RPQIESLKFG-AHIVVGTPGRLMDHIERDTVDFSGLHTLVLDEADRM- 141

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++ + P  R T + ++    DI K + +   RKP +  +  ++
Sbjct: 142 ------LDMGFYDDVTKIVGSCPGTRQTQLFSATYADDIRKASARFL-RKPKEVKVESVH 194

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEE--KKES-----NFRSVVERFNSLHEHFTSSIA 519
              ++ +R   +  +  + +    Q+ E  + ES     N ++      +  E    S  
Sbjct: 195 DASQIEQRFYEI--DADRRHSAVAQLLEHFRPESTLAFCNTKAQCRELAAYLESRGFSAL 252

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG +   D+E V+  F N +C +L+AT V   G+D +DA   +I N E     ++H  
Sbjct: 253 ALHGDLEQRDREDVLIQFANRSCSVLVATDVAARGLD-IDALDAVI-NVEITPDPEVHIH 310

Query: 580 R-GRVGRGEEISSCILLYHP 598
           R GR GRG+     + L  P
Sbjct: 311 RIGRTGRGDAKGLALSLCAP 330


>gi|329905038|ref|ZP_08273973.1| ATP-dependent RNA helicase DbpA [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547774|gb|EGF32547.1| ATP-dependent RNA helicase DbpA [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 461

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 134/320 (41%), Gaps = 34/320 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQ---HYEFIKKYTQNTQI 350
           I Q   GSGKT    I +   +       QA+++ P   LA Q       + ++  NT+I
Sbjct: 47  IAQAKTGSGKTAAFGIGILQRLNPTWFAIQALVICPTRELADQVSNELRRLARFADNTKI 106

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR 405
           +   + G  P    R  +  + HG AHII+GT    +D     SI    +  +++DE  R
Sbjct: 107 LT--LCGGAPM---RPQIASLEHG-AHIIVGTPGRLRDHIGRGSIDLSTVQTLVLDEADR 160

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                 +   ++ +     +++A P  R  +L S    D  + +  P  R P + + +  
Sbjct: 161 M---VDMGFYEEISG----IVSACPTRRQTLLFSATYPDDIRKSSAPFLRDPTE-ITVEA 212

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-------ERFNSLHEHFTSSI 518
              D  IE+    +    +   +   +   K ++  +         E  + L     S++
Sbjct: 213 QHDDNRIEQRFYEVGYDDRNDAVGRLLNNYKPASALAFCNTKIHCRELADELRAQGFSAM 272

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+ +G +   +++ ++  F NG+C +L+AT V   G+D+    ++I  +        +H+
Sbjct: 273 AL-YGELEQRERDEILVLFANGSCSVLVATDVAARGLDIQSLEMVINVDVSKDTEVHIHR 331

Query: 579 LRGRVGRGEEISSCILLYHP 598
           + GR GRG      + L  P
Sbjct: 332 V-GRTGRGAARGLALSLCAP 350


>gi|304385240|ref|ZP_07367585.1| ATP-dependent RNA helicase DbpA [Pediococcus acidilactici DSM
           20284]
 gi|304328447|gb|EFL95668.1| ATP-dependent RNA helicase DbpA [Pediococcus acidilactici DSM
           20284]
          Length = 453

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 152/350 (43%), Gaps = 49/350 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT  QE  I  I +  S       + Q   GSGKT   L+ +   ++      QAVI  P
Sbjct: 25  PTPVQERVIPLIAEGQSV------VGQSQTGSGKTHAFLLPIFNQIDPAKNAIQAVITTP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGN-MPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q YE  K+    ++  +EI  GN +    +++ + ++ H Q  I+IGT     D
Sbjct: 79  SRELAYQIYEAAKQLAAASETPIEI--GNYVGGTDKKRQIAKLEHHQPAIVIGTPGRVLD 136

Query: 389 SIQ-----YYKLILVIVDEQHRFGVQQRLKLTQK--ATAP---HVLLMTATPIPRTLVLT 438
            +Q     + ++  +++DE         L    +  A+ P    +L+ +AT IP+ L   
Sbjct: 137 LLQARALNFRQVQYLVIDEADMTLDMGFLSAVDQIAASMPENLQMLVFSAT-IPQQL--- 192

Query: 439 SLGDIDISKITEKPAGRK-PIKTVIIPINRIDEVIERLKVVLSEGKKA--YWICPQIEEK 495
              ++ + K  + PA  + P+ T I P   I  ++   K   S+ K    Y +    E  
Sbjct: 193 ---NVFLQKYMKHPAIEEIPVATTISPT--IKNILISTK---SQDKNNLIYQLLTMGEPY 244

Query: 496 KESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F +  ER + L  +  S    +A IHG +   +++ +M        + ++AT +  
Sbjct: 245 LALVFTNTKERADELTNYLKSQGLPVAKIHGGIPPRERKRIMKDIHRLRYQYVVATDLAA 304

Query: 553 VGIDVVDASIIIIE----NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            GID+   S++I +    + E F    +H++ GR GR     + I LY P
Sbjct: 305 RGIDIEGVSLVINDDIPTDLEFF----IHRV-GRTGRNGLPGTAITLYMP 349


>gi|282882139|ref|ZP_06290780.1| primosomal protein N' [Peptoniphilus lacrimalis 315-B]
 gi|281298169|gb|EFA90624.1| primosomal protein N' [Peptoniphilus lacrimalis 315-B]
          Length = 781

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 20/210 (9%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           KK++    + E K  +K +  +  + T ++E   +D ++ +    + + IL G  GSGKT
Sbjct: 227 KKDLVTEFDREVKTDKKYVGKVGTNHTLNEEQ--EDAIRSIEGTKKEVSILYGLTGSGKT 284

Query: 308 LVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
            V L     A++ G   +++ P IG+ +Q     I+++    Q  V II   + +  R +
Sbjct: 285 EVYLNLAKIALDRGEDVIVLVPEIGLTSQ----MIERFRNKFQDDVAIIHSKLSKGQRYE 340

Query: 367 ALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH--RFGVQQRLKLTQKATA--- 420
              +I +G  HI++G   A+F   + +    L+I+DE H   +     LK      A   
Sbjct: 341 EYRKILNGDVHIVVGVRSAVF---VPFTNCSLIILDEFHDSSYTFHDSLKYDSIEVAIKR 397

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDIS 446
                 V+L +ATP      L   G  ++S
Sbjct: 398 MENKGKVVLGSATPDISHYYLAQQGKYNLS 427


>gi|323341495|ref|ZP_08081736.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
 gi|323091106|gb|EFZ33737.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
          Length = 446

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 156/363 (42%), Gaps = 52/363 (14%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L+ I F  PT+ Q   I  IL+      R   + Q   GSGKT   L+ +   ++     
Sbjct: 18  LKEIGFKEPTEVQARLIPLILK------RRSVVGQSQTGSGKTHTFLLPIFQTIDPELTE 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRKALERIAHGQAHII 379
            QAVI  P   LA Q Y+  K+  ++++  I+V    G      +++ +E++ H Q  I+
Sbjct: 72  VQAVITTPSRELAYQIYDAAKQIAKHSEKEILVHNYVGG---TDKQRQIEKLEHRQPQIV 128

Query: 380 IGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           IGT     D     ++  +   +++VDE     +   L   ++  A       A+ +P+ 
Sbjct: 129 IGTPGRVLDLMKSQALDVHNASVLVVDEAD---MTLDLGFLKETDA------IASAMPKE 179

Query: 435 LVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           L +         K+  KP  RK    PI  V+   N I   I+   ++ ++G+    +  
Sbjct: 180 LQMMVFSATIPDKL--KPFLRKYMTDPIVEVVENKNVISPTIDNW-LISTKGRDRNQLIY 236

Query: 491 QIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Q+    +      F +  ER + L  +  S    +A IHG +   +++  M   +N   +
Sbjct: 237 QLLTMGQPYLALVFANTKERVDDLTRYLRSQGLRVAKIHGGIPPRERKRTMREIQNMEYQ 296

Query: 544 LLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            ++AT +   GID+   S +    I E+ E F    +H++ GR GR     + I LY P 
Sbjct: 297 FVVATDLAARGIDIEGVSQVINDDIPEDLEFF----IHRV-GRTGRNGMEGTAITLYAPS 351

Query: 600 LSK 602
             K
Sbjct: 352 EDK 354


>gi|227544381|ref|ZP_03974430.1| primosomal replication protein n [Lactobacillus reuteri CF48-3A]
 gi|300909758|ref|ZP_07127219.1| DNA replication factor Y [Lactobacillus reuteri SD2112]
 gi|227185644|gb|EEI65715.1| primosomal replication protein n [Lactobacillus reuteri CF48-3A]
 gi|300893623|gb|EFK86982.1| DNA replication factor Y [Lactobacillus reuteri SD2112]
          Length = 809

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 18/188 (9%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P+ ++G +    L   P      Q++A+  I Q +   +  + +LQG  GSGKT V L +
Sbjct: 255 PLAMQGTLDDAHL-AAPLQLNADQQNAVNQINQAIDNHDPKVFLLQGVTGSGKTEVYLQS 313

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +A A++ G  A+++ P   L  Q    + +  +     V ++  ++    R     RI  
Sbjct: 314 IANALQQGKTALMLVPEISLTPQ---IVNRVRRRFGSKVAVLHSSLSNGERYDEWRRIER 370

Query: 374 GQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPH 422
           G+A +++G   A+F        L L+I+DE+H          R+  ++  K   K     
Sbjct: 371 GEAQVVVGARSAVF---APLTNLGLIILDEEHESSYKQDESPRYQAREVAKWRGKYNQAP 427

Query: 423 VLLMTATP 430
           V+L +ATP
Sbjct: 428 VVLGSATP 435


>gi|306830625|ref|ZP_07463790.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304427133|gb|EFM30240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 447

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 136/323 (42%), Gaps = 41/323 (12%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           +   GSGKT   L+ +   ++      Q VI AP   LA Q Y+  K+  + ++   EI 
Sbjct: 44  ESKTGSGKTHTFLLPIFEKLDENSNNVQVVITAPSRELATQIYQATKQIAEKSE--TEIR 101

Query: 356 TGN-MPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQ 409
             N +    + + +E++   Q HI+IGT     D      ++ YK    +VDE       
Sbjct: 102 VANYVGGTDKLRQIEKLKSSQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDM 161

Query: 410 QRLKLTQK--ATAP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
             L    K   T P    +L+ +AT IP+ L         + K    P   K IKT  + 
Sbjct: 162 GFLDTVDKIAGTLPKDVQILVFSAT-IPQKLQPF------LKKYLTNPVMEK-IKTTTVI 213

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSS- 517
            + ID  +     V ++G+        +E  K  N      F +  ER + LH +  S+ 
Sbjct: 214 ADTIDNWL-----VSTKGRDKN--AQILEITKALNPYLAMIFVNTKERADELHSYLVSNG 266

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +A IHG +   +++  M+  K  + + ++AT +   GID+   S +I +         
Sbjct: 267 LKVAKIHGDIPPRERKRTMNQIKKLSYEYIVATDLAARGIDIEGVSHVINDAIPQDLSFF 326

Query: 576 LHQLRGRVGRGEEISSCILLYHP 598
           +H++ GR GR       I LY P
Sbjct: 327 VHRV-GRTGRNGLNGIAITLYKP 348


>gi|255970683|ref|ZP_05421269.1| primosomal protein n [Enterococcus faecalis T1]
 gi|255961701|gb|EET94177.1| primosomal protein n [Enterococcus faecalis T1]
          Length = 797

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 250 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 309

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 310 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 365

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++IVDE+H    +Q
Sbjct: 366 ARSAIFAPIE--NIGVIIVDEEHEASYKQ 392


>gi|240274195|gb|EER37713.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus H143]
 gi|325095426|gb|EGC48736.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus H88]
          Length = 487

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 146/334 (43%), Gaps = 58/334 (17%)

Query: 300 GDVGSGKTL---VALIAMAAAVEAGGQ-----AVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   V  I     + A        AVI+ P   LA Q Y+ + K+T N  + 
Sbjct: 114 AETGSGKTLAFGVPCIRKVLEINASHSSFRISAVIITPTRELAMQIYDQLVKFTPNG-VG 172

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
           +  I G   +  +R+AL++     A +I+ T    +D     S+   K+  +++DE  R 
Sbjct: 173 LACIYGGASKDDQRRALKK-----ASVIVATPGRLKDFHSDESLNLKKVKYLVLDEADRM 227

Query: 407 ---GVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKT 460
              G +Q +K           +++A P  R   T++ T+   I + K+      ++PI  
Sbjct: 228 LDKGFEQDIKD----------ILSAMPSSRKRQTVMFTATWPISVRKLATTFM-KEPITV 276

Query: 461 VI-------IPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF----- 507
            I       I  N RI +++E   VV  E K++  +    + ++  N    V  F     
Sbjct: 277 TIGGDLSSDIRANTRIKQIVE---VVKPENKESRLLSLLNQYQRGRNAMDKVLVFCLYKK 333

Query: 508 -NSLHEHFTSS----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             +  E F  S    +A IHG M+  ++ + +D+FK G+  +L+AT V   G+D+    +
Sbjct: 334 EATRIERFIRSKGFKVAGIHGDMNQTERFNSLDAFKLGSVPVLVATDVAARGLDIPAVKL 393

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           ++           +H++ GR GR       I ++
Sbjct: 394 VLNVTFPLTVEDYVHRI-GRTGRAGSDGLAITMF 426


>gi|224096586|ref|XP_002310663.1| predicted protein [Populus trichocarpa]
 gi|222853566|gb|EEE91113.1| predicted protein [Populus trichocarpa]
          Length = 407

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 134/312 (42%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKT-LVALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT ++AL A      A    QA+I++P   LA+Q  + I    +N  I V 
Sbjct: 75  IAQAQSGTGKTSMIALTACQLVDTANREVQALILSPTRELAEQTEKVITAIGENINIQVH 134

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL----ILVIV----DEQHR 405
              G        + LE   +G  H++ GT     D I+   L    I V+V    DE   
Sbjct: 135 ACIGGKSVGEDIRKLE---YG-VHVVSGTPGRVCDMIKRRSLRTRAIRVLVLDESDEMLS 190

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V+L++AT     L +TS    D            P+K   I
Sbjct: 191 RGFKDQIYDVYRYLPPELQVVLISATLPNEILEITSKFMTD------------PVK---I 235

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K      +K  W    + +  ++          N +  V+   +    
Sbjct: 236 LVKRDELTLEGIKQFFVAVEKEEWKFETLTDLYDTLTITQAVIFCNTKRKVDWLTAKMVE 295

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F  +++ +HG M   +++++M +F+ G  ++LI T V   G+DV   S++I  +  +   
Sbjct: 296 FNFTVSAMHGDMPQRERDAIMSNFRLGETRVLITTDVWARGLDVQQVSLVINYDLPNNRE 355

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 356 LYIHRI-GRSGR 366


>gi|302392198|ref|YP_003828018.1| primosomal protein N' [Acetohalobium arabaticum DSM 5501]
 gi|302204275|gb|ADL12953.1| primosomal protein N' [Acetohalobium arabaticum DSM 5501]
          Length = 747

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 29/178 (16%)

Query: 270 PFSPTKSQESAIKDI--LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           PFS T  Q+ A+  I  L++  +   +L  L+G  GSGKT V L A+A  ++ G  A+++
Sbjct: 204 PFSLTTEQQKALNQIENLREAPESGTLL--LKGVTGSGKTEVYLQAIAQVIDDGQDAIVL 261

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALF 386
            P   L  Q    +K++       + I   ++    R     R+  G+A +++G   A+F
Sbjct: 262 VPEISLTPQT---VKRFKSRFGDQIAIYHSHLSNGERYDEWLRMKRGEAKVVVGARSAIF 318

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQ--------------RLKLTQKATAPHVLLMTATP 430
                +  L L+I+DE+H    +Q              R +LT   T    +L TATP
Sbjct: 319 ---APFSNLGLIIIDEEHETSYKQGDHPKYQARKVANKRAELTGAVT----VLGTATP 369


>gi|258516456|ref|YP_003192678.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780161|gb|ACV64055.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 446

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 146/347 (42%), Gaps = 45/347 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + Q   G+GKTL  L+ +   +E      Q++I+ P   LA Q     K       I + 
Sbjct: 52  LAQSQTGTGKTLAFLLPVLEKIEVNKPQVQSLIITPTRELALQITGEAKNLGDKLGINIL 111

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
            + G      + K L+    G  H++IGT     D I+          KL+L   D+   
Sbjct: 112 SVYGGQDVERQIKKLK----GHIHMVIGTPGRLLDHIRRKTISLSGVSKLVLDEADQMLH 167

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  + ++  + +       +L +AT  PR   L +       +   KPA  + I++  +
Sbjct: 168 MGFLEDVEEIIRKSPVKKQTMLFSATLPPRIRALAA-------RYMRKPADIR-IQSRQV 219

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---S 517
            +++I +++    + L E +K   +C  I+E +      F    +R + L         +
Sbjct: 220 ILDKIKQIV----IELEEKEKLTQLCRLIDENQPYLAIIFCHTRQRASELAAALIQRGYA 275

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              +HG +S   ++ VM  F +   +LL+AT +   G+D+   + +   +  H+  + +H
Sbjct: 276 ADELHGDLSQAKRQQVMKRFSSARLQLLVATDIAARGLDIEGVTHVYSYDISHYLESYIH 335

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRL-------SVLKNTEDG 617
           ++ GR GR  E  + +    P   ++ Y R+       ++ K T DG
Sbjct: 336 RI-GRTGRAGESGTAVTFVLP--GEHRYLRIIEQGTGAAIEKYTADG 379


>gi|225028092|ref|ZP_03717284.1| hypothetical protein EUBHAL_02362 [Eubacterium hallii DSM 3353]
 gi|224954562|gb|EEG35771.1| hypothetical protein EUBHAL_02362 [Eubacterium hallii DSM 3353]
          Length = 750

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 8/134 (5%)

Query: 273 PTKSQESAIKDILQ-DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
           P   ++ A+ D  Q D     R   +L G  GSGKT V L  +   +    Q +++ P  
Sbjct: 210 PLNEEQQAVADNFQKDYDNGKRGTYLLYGVTGSGKTEVYLALIEQVLAKKKQVIVLIPEI 269

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSI 390
            L    Y+ ++++ +     + +I   M +  +  A ERI  G+A +IIG   ALF  + 
Sbjct: 270 SLT---YQTVRRFYERFGERIAVINSRMSKGEKSDACERIRAGEADVIIGARSALFAPT- 325

Query: 391 QYYKLILVIVDEQH 404
              +L L+I+DE+H
Sbjct: 326 --ERLGLIIIDEEH 337


>gi|74006740|ref|XP_861512.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 10 [Canis familiaris]
          Length = 640

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 85/405 (20%), Positives = 162/405 (40%), Gaps = 96/405 (23%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 130 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIESFSD 184

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ +
Sbjct: 185 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 238

Query: 315 AAAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + + G                      ++++AP   LA Q YE  +K++  +++   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 299 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 354

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D              +
Sbjct: 355 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLD--------------E 399

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            + + + R+    E +       +K       +E KK ++    +E F   HE +  +  
Sbjct: 400 YIFLAVGRVGSTSENIT------QKDSLTLVFVETKKGAD---SLEDF-LYHEGY--ACT 447

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 448 SIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 492


>gi|89069293|ref|ZP_01156656.1| primosomal protein N' [Oceanicola granulosus HTCC2516]
 gi|89045169|gb|EAR51237.1| primosomal protein N' [Oceanicola granulosus HTCC2516]
          Length = 751

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 107/264 (40%), Gaps = 45/264 (17%)

Query: 257 VEGKIAQKILR------NIPFSP----------TKSQESAIKDILQDMSQKNRMLRILQG 300
           V+G +AQ  +R      + P+ P          T  Q++    +   +        +L+G
Sbjct: 185 VKGLVAQGAVREEEAPRDGPYPPLDPDHGGKALTPDQQAGAAALRAGVRSGRYGTTLLRG 244

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
             GSGKT V L A+A  + AG QA+++ P   L+    EF+ +               + 
Sbjct: 245 VTGSGKTEVYLEAVAECLRAGRQALVLLPEIALSA---EFLARVEARFGARPAEWHSGLT 301

Query: 361 QAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA- 418
              RR+A + I  GQA +++G   ALF   + +  L LV+VDE+H    +Q   +   A 
Sbjct: 302 TTERRRAWKMIGEGQAQMVVGARSALF---LPFRDLGLVVVDEEHDTSYKQEDGVLYNAR 358

Query: 419 ---------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
                        V+L +ATP      L S  +++  K        +    V+  +  ID
Sbjct: 359 DMAVLRASMADAQVVLASATP-----SLESWANVEAGKYARLDLTSRFGPAVMPAMAAID 413

Query: 470 EVIERLKVVLSEGKKAYWICPQIE 493
             +E L         A WI P ++
Sbjct: 414 MRVEDL-------PGASWISPALQ 430


>gi|329767883|ref|ZP_08259397.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341]
 gi|328838671|gb|EGF88270.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341]
          Length = 486

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 147/352 (41%), Gaps = 42/352 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           LRN+ F SPT  Q   I  +L  +        + Q   GSGKT    I +   V    Q 
Sbjct: 17  LRNMNFISPTGIQTETIPYVLSGIDI------LAQAQTGSGKTGAFGIPLVDTVRKSDQL 70

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            ++I+AP   LAQQ  E ++  ++   + V I+ G      + + L++    +  II+GT
Sbjct: 71  QSLILAPTRELAQQVGEQLRLMSRAKGLKVSIVFGGTSIERQIQDLKK----RPQIIVGT 126

Query: 383 HALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK-LTQKATAPHVLLMTATPIPR 433
                D I            L+L   DE    G  + ++ +  K T+ H  L+ +  +P+
Sbjct: 127 PGRVIDHINRRTIKLDSLTHLVLDEADEMLNMGFIEDVRFILSKITSRHQTLLFSATMPK 186

Query: 434 TLVLTS---LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           T++  S   + D  + K T      KP  T    I R +E +E L   L        I  
Sbjct: 187 TIMELSKDFMKDYKLIK-TISDEDLKPDITEYATIARENEKLETLIGFLDVQNPNLAIVF 245

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
              +++     S +     L E        +HG ++   +  ++  FKN + ++L+AT V
Sbjct: 246 GRTKRRVDELSSALIAKGYLAEG-------LHGDITQSKRLEILRKFKNNSLQILVATDV 298

Query: 551 IEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              GID+ D + +    I ++ E +     H++ GR GR  +    I   +P
Sbjct: 299 AARGIDISDVTHVYNFDIPQDVESY----THRI-GRTGRAGKSGVAITFLNP 345


>gi|300176647|emb|CBK24312.2| unnamed protein product [Blastocystis hominis]
          Length = 348

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAVEAGGQAVIMAP 329
           P+  Q+ AI  +L+          I Q   G+GKT    +A + M    +   Q +IMAP
Sbjct: 15  PSVIQQKAILPVLEGHDT------IAQAQSGTGKTGTFCIAALQMLDLNDPSTQVLIMAP 68

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q +  ++  +    + +    G        K LE    G   +I+GT     D 
Sbjct: 69  TRELALQIFNVLRHLSHFMNVTMHCCVGGTALQEDMKMLE----GSIQMIVGTPGRVNDL 124

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTS 439
           +Q   L         L   DE    G ++++    ++   +V   L +AT +P+ +    
Sbjct: 125 LQRGLLNLSNCKLFCLDEADEMLSRGFKEQIYEVFQSLKDNVQVALFSAT-MPQDI---- 179

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
              +DISK       R P++   I + + +  +E +K    E  K  W    + +  ES 
Sbjct: 180 ---LDISK----KFMRDPVR---ILVKKDELTLEGIKQFYVEMDKESWKFETLCDLYESI 229

Query: 499 ---------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N R  V+       +     + IHG M    + S++  F++G  ++LI T 
Sbjct: 230 TIAQAIIYCNTRRKVDWLTRSMRNKDFVTSAIHGDMDMQVRNSILKEFRSGASRVLITTD 289

Query: 550 VIEVGIDVVDASIIII-------ENAEHFGLAQLHQLRGRVGRG 586
           ++  GIDV   S+++        EN  H    QLH  RG    G
Sbjct: 290 LLARGIDVQQVSLVVNYDFPTDRENYIHRYCHQLHSARGSSHDG 333


>gi|126737212|ref|ZP_01752947.1| primosome assembly protein PriA [Roseobacter sp. SK209-2-6]
 gi|126721797|gb|EBA18500.1| primosome assembly protein PriA [Roseobacter sp. SK209-2-6]
          Length = 731

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 103/250 (41%), Gaps = 43/250 (17%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRI-----------LQGDVGSGKTLVALIAMA 315
           R++P+ P    E   K++ QD S     L +           L+G  GSGKT V L A+A
Sbjct: 181 RDLPY-PRLDPELPGKELTQDQSAAAAALAVGVQSGGYGTTLLKGVTGSGKTEVYLEAVA 239

Query: 316 AAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           + +  G QA+++ P I + A    EF+K+  Q            +    RR+    +  G
Sbjct: 240 SCLRKGRQALVLLPEIALTA----EFLKRVEQRFGATPAEWHSGVTMTERRRVWRMVGQG 295

Query: 375 QAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------TAPHV 423
            A ++IG   ALF   + +  L L+IVDE+H    +Q   +   A           +  V
Sbjct: 296 NAQLVIGARSALF---LPFRDLGLIIVDEEHDTSYKQEDGVLYNARDMSVLRAALCSAQV 352

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           +L +ATP   T      G      +T +        T ++P       ++ L +   E  
Sbjct: 353 VLASATPSLETWANAEAGKYKRLDLTAR------FGTAVLP------EMKALDMRAEEML 400

Query: 484 KAYWICPQIE 493
            + WI P ++
Sbjct: 401 PSTWISPSLK 410


>gi|114569874|ref|YP_756554.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris
           MCS10]
 gi|114340336|gb|ABI65616.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
          Length = 498

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 156/367 (42%), Gaps = 50/367 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGGQAVI 326
           PT  Q  AI   L        +L I Q   G+GKT      L+  ++   A     +++I
Sbjct: 24  PTPIQAGAIPAALAGRD----VLGIAQ--TGTGKTASFTLPLIERLSRGRAKARMPRSLI 77

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHIIIGTH 383
           +AP   LA Q  E  + Y++  ++ + ++ G +   PQ       E I +  A ++I T 
Sbjct: 78  IAPTRELAAQCAENFETYSKGQKLSMALLIGGVAFGPQ-------EEILNKGADVLIATP 130

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPI 431
               D     KL++     ++VDE  R         +++   L   A     L  +AT +
Sbjct: 131 GRLLDHFGRGKLLMTGVQMLVVDEADRMLDMGFIPDLEKIFSLVPPAPRRQTLFFSAT-M 189

Query: 432 PR---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL---KVVLSEGKKA 485
           P+   +LV   L D +  +++        I  ++I +       +RL   + +  EG K 
Sbjct: 190 PKEIQSLVDRFLRDPERVEVSRPAQTGANITQLMIRLTDNSAKAKRLALRQAMSREGVKN 249

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             I      K++ +   VV R  SL  H  S+ A IHG +    + + +  FK GT + L
Sbjct: 250 GIIFSN--RKRDVD---VVAR--SLQRHGFSA-APIHGDLDQSARTATLADFKAGTLRFL 301

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +A+ V   G+D+ D S +   +  H     +H++ GR GR  +    + ++ P   K+  
Sbjct: 302 VASDVAARGLDIPDVSHVFNYDMPHHADDYVHRI-GRTGRAGKSGESVTIFAPGDEKSLA 360

Query: 606 TRLSVLK 612
             L ++K
Sbjct: 361 AVLKLIK 367


>gi|86147303|ref|ZP_01065617.1| primosome assembly protein PriA [Vibrio sp. MED222]
 gi|85834868|gb|EAQ53012.1| primosome assembly protein PriA [Vibrio sp. MED222]
          Length = 733

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 94/213 (44%), Gaps = 22/213 (10%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L N    P  S+E AI  I    SQ +    +L+G  GSGKT V L  +   ++ G QA+
Sbjct: 191 LENDQDKPKLSEEQAIA-IATVNSQTDFGCFLLEGVTGSGKTEVYLNMIKPILDQGKQAL 249

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH- 383
           ++ P IG+  Q     I ++ +   + VE+I   +  + R  A        A I+IGT  
Sbjct: 250 VLVPEIGLTPQT----INRFKRRFNVPVEVIHSGLNDSERLNAWLSARDKIAGIVIGTRS 305

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-----------TQKATAPHVLLMTATPIP 432
           ALF     +  L ++IVDE+H    +Q+  L             KA  P V+L +ATP  
Sbjct: 306 ALF---TPFADLGIIIVDEEHDASYKQQDSLRYHARDVAIMRAHKAQIP-VVLGSATPAF 361

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            TL    +G      +T +     P    ++ +
Sbjct: 362 ETLHNAQIGKYSYLTLTSRAGVALPTTNKVLDV 394


>gi|71019363|ref|XP_759912.1| hypothetical protein UM03765.1 [Ustilago maydis 521]
 gi|74701371|sp|Q4P7Z8|DBP5_USTMA RecName: Full=ATP-dependent RNA helicase DBP5
 gi|46099567|gb|EAK84800.1| hypothetical protein UM03765.1 [Ustilago maydis 521]
          Length = 456

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 147/339 (43%), Gaps = 50/339 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+K QE A+  +LQ+   KN    I Q   G+GKT   ++ M + ++      QA+ +AP
Sbjct: 87  PSKIQEKALPLLLQN-PPKNM---IGQSQSGTGKTAAFILTMLSRIDYDLQKPQAIALAP 142

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA+Q  +  +  ++ T +   +    +P   +R   E+I    A +IIGT     D 
Sbjct: 143 SRELARQIMDVARTMSKFTNVTTCLC---LPDEVKRG--EKIT---AQLIIGTPGKTFDM 194

Query: 389 ----SIQYYKLILVIVDE------QHRFGVQQ-RLKLTQKATAPHVLLMTATP--IPRTL 435
                I    + + ++DE      Q   G Q  R+K T   +   VL     P  +    
Sbjct: 195 IKSKGIDTAAIKVFVLDEADNMLDQQSLGEQSIRVKNTMPKSCQLVLFSATFPTNVYDFA 254

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRID---EVIERLKVVLSEGKKAYWICPQI 492
           V  + G  +I ++ ++    + IK   +     D   EV+  L  +L+ G+   + C + 
Sbjct: 255 VRIAPGANEI-RLKQEELSVEGIKQFYMDCKDEDHKYEVLVELYNLLTIGQSIIF-CAK- 311

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R   +R           +  +HGR+   D++  +D+F++G  K+LI+T VI 
Sbjct: 312 --------RETADRIAQKMTQEGHKVDSLHGRLETADRDRTIDAFRDGKSKVLISTNVIA 363

Query: 553 VGIDVVDASIII------IENAEHFGLAQLHQLRGRVGR 585
            GID+   +++I       +  E      LH++ GR GR
Sbjct: 364 RGIDIQQVTLVINYDMPLTQTGEADAETYLHRI-GRTGR 401


>gi|257088236|ref|ZP_05582597.1| primosomal protein n [Enterococcus faecalis D6]
 gi|256996266|gb|EEU83568.1| primosomal protein n [Enterococcus faecalis D6]
 gi|315026428|gb|EFT38360.1| primosomal protein [Enterococcus faecalis TX2137]
          Length = 810

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++IVDE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIVDEEHEASYKQ 405


>gi|270293066|ref|ZP_06199277.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           M143]
 gi|270279045|gb|EFA24891.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           M143]
          Length = 447

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 154/355 (43%), Gaps = 38/355 (10%)

Query: 263 QKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           +K L  + F+ PT+ Q+  I  +L       R L + +   GSGKT   L+ +   ++  
Sbjct: 13  EKALEELKFTTPTEVQDKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQLDET 66

Query: 322 G---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQA 376
               QAVI AP   LA Q Y+  ++   ++ + V ++   G   +A   + +E++A  Q 
Sbjct: 67  SDSVQAVITAPSRELATQIYQAARQIVAHSDVEVRVVNYVGGTDKA---RQIEKLAISQP 123

Query: 377 HIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAP-----HVLLM 426
           HI+IGT     D ++   L +      +VDE         L+   K           ++ 
Sbjct: 124 HIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFMVF 183

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +AT IP+ L         + K    P   + IKT  +  + ID  +   K    +  + Y
Sbjct: 184 SAT-IPQKLQPF------LKKYLSNPVMER-IKTKTVISDTIDNWLISTK-GRDKNAQIY 234

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCK 543
            +   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN   +
Sbjct: 235 ELTQVMQPYLAMIFVNTKTRADELHAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|254224718|ref|ZP_04918334.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae V51]
 gi|125622781|gb|EAZ51099.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae V51]
          Length = 428

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 115/271 (42%), Gaps = 25/271 (9%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E +        +    + G
Sbjct: 66  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCG 125

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +  ++ AL        +I++ T      L Q  ++  ++  +++DE  R        
Sbjct: 126 GVDKTEQQNALAE----NPNILVATTGRLFDLTQSGLRLNRVTTLVLDEADR-------- 173

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 174 LLDMGFWPQVQALASQTAGVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAV 233

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +     ++HG  S
Sbjct: 234 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKS 293

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +E+ +  FKNGT ++LIAT ++  GI +
Sbjct: 294 QAQRETALAEFKNGTTQVLIATDLLARGIHI 324


>gi|118575685|ref|YP_875428.1| superfamily II helicase [Cenarchaeum symbiosum A]
 gi|118194206|gb|ABK77124.1| superfamily II helicase [Cenarchaeum symbiosum A]
          Length = 434

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 165/380 (43%), Gaps = 45/380 (11%)

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPT-KSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +E+GI  NV        LR++ F      QE+AI  +L           + Q   G+GKT
Sbjct: 5   EELGIKQNV-----LDALRDMGFEKAFPIQEAAIPVLLTGRDV------VGQAHTGTGKT 53

Query: 308 LVALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
               I+M   ++ GG  Q +I+AP   LA Q  E +KK+ + T++    I G      + 
Sbjct: 54  GAYSISMLQEIKEGGGIQGLIVAPTRELAVQITEEVKKFAKYTKVRPVAIYGGQSMGVQL 113

Query: 366 KALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            AL+R     A I++ T     D     SI   ++  +++DE           L      
Sbjct: 114 DALKR----GAEILVATPGRLIDHIKRGSISIDRVTHLVLDEADTM-------LDMGFID 162

Query: 421 PHVLLMTATPIPRTLVL-TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               ++  TP  + + L ++   I+I +++E+   + P + ++   +   E I++  +V+
Sbjct: 163 DIQFILDLTPDEKVMSLFSATMPIEILRLSEEYL-KNPKQFLLDADDLSGEGIDQSYLVI 221

Query: 480 SEGKKAYWICPQIEEKKESN---FRSVVERFNS----LHEHFTSSIAIIHGRMSDIDKES 532
            + +K  ++   I+E  +     F S   R       LH+    ++AI  G MS   +E 
Sbjct: 222 RDREKMDYLVDFIKENGKGQTIVFCSTKYRTRDVARMLHKRNYGAVAI-EGDMSQHRREQ 280

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M  F+    ++L+AT V   GIDV   ++++  +  +  +   H++ GR  R       
Sbjct: 281 SMSRFRTAKAQILVATDVAARGIDVPRVALVVNYDVPNQEMIYFHRI-GRTARAGAKGRA 339

Query: 593 ILLYHPPLSKNSYTRLSVLK 612
           I L    +S +S +   V+K
Sbjct: 340 ITL----VSYSSVSEFDVIK 355


>gi|52843061|ref|YP_096860.1| primosomal protein N' (replication factor Y) [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52630172|gb|AAU28913.1| primosomal protein N' [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 725

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 110/240 (45%), Gaps = 27/240 (11%)

Query: 237 QIALLLMRK--QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           QIA LL  +     +++ +P  +  K++       P +    Q  A+  I + +      
Sbjct: 164 QIAALLACQAINLSQQVTLPTKIPEKLSP------PLTLNPEQAVAVDSIFEHIHHYQCF 217

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVE 353
           L  LQG  GSGKT V L  +A  +E G Q +++ P IG+  Q     + ++T      + 
Sbjct: 218 L--LQGVTGSGKTEVYLHVIAKILEQGKQVLVLVPEIGLTPQ----LLSRFTARFNHPIT 271

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR-- 411
           ++  N+ ++ R+ A +     +  ++IGT +     +    L L+I+DE+H   ++Q   
Sbjct: 272 VLHSNLNESERQIAWQLAKENKVKMVIGTRSAVFTPLP--NLGLIIIDEEHDSSLKQMEG 329

Query: 412 LKLTQKATA---PH-----VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           ++ + + TA    H     ++L TATP   T+        ++ ++T K A   P+   +I
Sbjct: 330 VRYSARDTALMRAHLANIPIILGTATPSLETIHNYKQKKYNLLRLTHKAASTTPLHYQLI 389


>gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
 gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
 gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
          Length = 487

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 150/364 (41%), Gaps = 62/364 (17%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKTLVALIAMAAAVE-- 319
           +L NI F  PT+ Q  AI  IL+         R + G    G+GKT    +     ++  
Sbjct: 17  LLENIGFEKPTEIQSKAIPAILEG--------RDVVGLSQTGTGKTAAYSLPFLEKIDLE 68

Query: 320 -AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               Q +I+ P   LA Q  + +K++  + ++ V  + G      + ++L++      HI
Sbjct: 69  QKTVQGLILTPTRELAVQVTQSLKEFAVDRRLWVLTVCGGQSMERQIRSLQK----GVHI 124

Query: 379 IIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTA 428
           ++GT     D ++  KL        +L   DE    G    +K  L Q       +  +A
Sbjct: 125 VVGTPGRVIDLLERGKLSFEELRWAVLDEADEMLSMGFIDDVKKILRQSPKTRQTVCFSA 184

Query: 429 T--PIPRTLVLTSLGDIDISKITEKPAGRKPIK-TVIIPINRIDEVIERLKVVLSEGKKA 485
           T  P  R LV   L D              PI  T+  P    D + + + ++     K 
Sbjct: 185 TMPPAIRDLVENFLND--------------PINITIKQPQVTPDRIAQEVYMIPRGWSKT 230

Query: 486 YWICPQIE-EKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
             + P +E    ES        R+  E  N L E   S+    HG ++   +E ++  FK
Sbjct: 231 KALLPILEMANPESAIIFVRTKRTASELTNELVEAGQSADEY-HGDLNQNQREKLVRRFK 289

Query: 539 NGTCKLLIATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           +G  K+++AT +   G+DV + S +I     +N E +    +H++ GR GR  +  + I 
Sbjct: 290 DGKIKMIVATDIAARGLDVENLSHVINFDLPDNTESY----IHRI-GRTGRAGKTGTAIA 344

Query: 595 LYHP 598
           L  P
Sbjct: 345 LVEP 348


>gi|39995239|ref|NP_951190.1| primosomal protein n` [Geobacter sulfurreducens PCA]
 gi|39982001|gb|AAR33463.1| primosomal protein n` [Geobacter sulfurreducens PCA]
 gi|298504244|gb|ADI82967.1| primosomal protein N', ATP-dependent helicase [Geobacter
           sulfurreducens KN400]
          Length = 751

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 32/215 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L+G  GSGKT V L A+A  +E G  A+++ P   L  Q    + ++ +  +  V ++ 
Sbjct: 242 LLRGVTGSGKTEVYLQAIAHCLEQGRSALVLVPEIALTPQ---LVSRFRRRFRCGVAVLH 298

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH----------R 405
             +    R     RI  G+A I+IG   A+F        L +++VDE+H          R
Sbjct: 299 SGLSDGERFDEWRRIRRGEAAIVIGARSAIFA---PLADLGMIVVDEEHEGSYKQGEGFR 355

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           +  +    +  K     V+L TATP   T    + G ++   + E+      +  + +P 
Sbjct: 356 YNARDMALVRGKMAGACVVLGTATPQVTTWYAVAGGKLECLDLPER------VNGLPLPS 409

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
             I +V          G + + + P++  + E+N 
Sbjct: 410 AEIIDV---------RGARGHVLHPRLAAEVEANL 435


>gi|13470594|ref|NP_102163.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
 gi|14021336|dbj|BAB47949.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
          Length = 467

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 141/330 (42%), Gaps = 43/330 (13%)

Query: 302 VGSGKT-------LVALIAMAAAVEA-GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT       L  +IA+     A   +A+I+AP   LA Q  + IK   +   +   
Sbjct: 56  TGSGKTAAFALPILSKIIALGTKRRAKTTRALILAPTRELAVQIEDTIKILAKGAHVSTA 115

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
           ++ G +    R   ++++A G   I+I T     D ++   LIL     +++DE  R   
Sbjct: 116 LVLGGV---SRFSQVKKVAPG-VDILIATPGRLTDLVREGDLILSDTKWLVLDEGDRMLD 171

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G    +K   KATAP     L +AT +P  +   + G +           + P++  + 
Sbjct: 172 MGFINDVKRIAKATAPDRQTALFSAT-MPDEIAELAKGLL-----------KNPVRIEVS 219

Query: 464 PINRID-EVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSS 517
           P +    E+++ +    ++ K+        +E  +S       +   +R     E     
Sbjct: 220 PQSTAAAEIVQGVVFARTKQKRQVLSTMLADEAMKSVIIFSRTKHGADRVTKDLERDGFK 279

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            A+IHG  S   ++  ++ F+ G+ ++L+AT +   GIDV   S ++  +      + +H
Sbjct: 280 AAVIHGNKSQNARQKALNDFREGSVRILVATDIAARGIDVPGISHVVNFDLPDEAESYVH 339

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           ++ GR GR       I L  P  S+NS  R
Sbjct: 340 RI-GRTGRNGMDGIAITLCDP--SENSKLR 366


>gi|242022378|ref|XP_002431617.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28, putative
           [Pediculus humanus corporis]
 gi|212516925|gb|EEB18879.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28, putative
           [Pediculus humanus corporis]
          Length = 788

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 141/338 (41%), Gaps = 66/338 (19%)

Query: 300 GDVGSGKTLVALIAMAAAVEA------------GGQAVIMAPIGILAQQHYEFIKKYTQN 347
            + GSGKTL  LI +   +++            G  A+I+AP   LAQQ  E   K+   
Sbjct: 404 AETGSGKTLAFLIPLIMWIQSLPKIQRMEDADQGPYAIILAPTRELAQQIEEETNKFGNP 463

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             I   ++ G +    R +   R+  G   I+I T     D ++   L+L     +++DE
Sbjct: 464 LGIRTVVVVGGL---SREEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 519

Query: 403 QHRF-------GVQQRLKL---------TQKATAPHVLLM---TATPIPRTLVLTSLGDI 443
             R         VQ+ L+          T++A     LL    +     +T++ T+    
Sbjct: 520 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDDKFLLANYNSKKKYRQTVMFTATMPP 579

Query: 444 DISKITEKPAGRKP----IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
            + ++  +   R+P    I +V  P+ R+++++     ++SE  K   +C  +    E  
Sbjct: 580 AVERLA-RTYLRRPAVVYIGSVGKPVERVEQIVH----IVSEQDKRRKLCELLARGVEPP 634

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N +   +      E    +   +HG      +E  + S KNGT  +L+AT V   
Sbjct: 635 VIIFVNQKKGADVLARGLEKLGYNACTLHGGKGQEQREYALSSLKNGTKDILVATDVAGR 694

Query: 554 GIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVGRG 586
           GID+ D S++I     ++ +A+      H++ GR GR 
Sbjct: 695 GIDIKDVSMVI-----NYDMAKTIEDYTHRI-GRTGRA 726


>gi|15892943|ref|NP_360657.1| ATP-dependent RNA helicase RhlE [Rickettsia conorii str. Malish 7]
 gi|15620136|gb|AAL03558.1| ATP-dependent RNA helicase RhlE [Rickettsia conorii str. Malish 7]
          Length = 414

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 139/313 (44%), Gaps = 33/313 (10%)

Query: 302 VGSGKTLVALIAMAAA-VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGKTL  L+ +  + ++    A+I+ P   LA Q +  + K T + +I   ++ G  P
Sbjct: 49  TGSGKTLAYLLPLIDSFIKNKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEP 108

Query: 361 QAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRL 412
              +   L++       +IIGT       L + S++  ++ + ++DE  R    G++++L
Sbjct: 109 MPKQFIQLKK----NPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQL 164

Query: 413 KLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +   K       VL+ +AT +P+ ++  S   ++            P++  +   N+   
Sbjct: 165 EEINKFLPEKRQVLMFSAT-MPKHIIAVSQKYLN-----------NPVRITVGATNKAAA 212

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRM 525
            I++  + +S+ +K   +  Q+  ++ S       +   ++   + ++   +   IHG +
Sbjct: 213 EIKQESMHVSDKEKFSALTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDL 272

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S   +E V+ SF+    ++++AT V   G+D+     +I  +        LH++ GR GR
Sbjct: 273 SQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRI-GRTGR 331

Query: 586 GEEISSCILLYHP 598
                  +    P
Sbjct: 332 AGATGHALSFISP 344


>gi|298246051|ref|ZP_06969857.1| primosomal protein N' [Ktedonobacter racemifer DSM 44963]
 gi|297553532|gb|EFH87397.1| primosomal protein N' [Ktedonobacter racemifer DSM 44963]
          Length = 882

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 13/147 (8%)

Query: 270 PFSPTKSQESAIKDILQ--DMSQKNRMLR--ILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           P   T  QE+A++ IL+  +  ++N + R  +L G  GSGKT V L AMA+ +  G + +
Sbjct: 347 PLQLTGEQEAALRAILEAVEEGKENSIPRPILLHGVTGSGKTEVYLQAMASVIAEGKRCI 406

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH- 383
           I+ P I +  Q       ++ +     V II   +    R     RI  G+  ++IG+  
Sbjct: 407 ILVPEIALTTQAVQRVAGRFPER----VAIIHSELSVGERYDEWRRIRAGEIDVVIGSRS 462

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQ 410
           ALF        L L+I+DE+H    +Q
Sbjct: 463 ALFAP---VPDLGLIIIDEEHEAAYKQ 486


>gi|47206275|emb|CAF95815.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 586

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 170/414 (41%), Gaps = 71/414 (17%)

Query: 216 KDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG-------------K 260
           KD +W+ P  + ERL + EL +G    +     F+K   IP+   G              
Sbjct: 92  KDDDWSKPTASNERLEH-ELFSGSNTGI----NFEKYDDIPVEATGTNCPSHIESFQDVD 146

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           + + I+ NI  S    PT  Q+ AI  I      K  ++   Q   GSGKT   L+ + +
Sbjct: 147 MGEIIMGNITLSRYTRPTPVQKYAIPII----KSKRDLMACAQ--TGSGKTAAFLLPVLS 200

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            +   G    +  I    Q  Y         +++   ++ G      + + LER      
Sbjct: 201 QIYTDGPGDALQAIKSSGQFAYR--------SRVRPCVVYGGADIGQQIRDLER----GC 248

Query: 377 HIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVL-- 424
           H+++ T     D ++  K+ L     +++DE  R     F  Q R  + Q    P  +  
Sbjct: 249 HLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGIRQ 308

Query: 425 -LMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            +M +   P+ + + +   L D     +    +  + I   ++ +  +D+    L ++ +
Sbjct: 309 TMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNA 368

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            GK +  +   +E KK ++    +E F     +  +SI   HG  S  D+E  +  F++G
Sbjct: 369 TGKDSLTLV-FVETKKGAD---ALEDFLYREGYACTSI---HGDRSQRDREEALHQFRSG 421

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-AQLHQLRGRVGRGEEISSCI 593
            C +L+AT V   G+D+ +   +I     +F L + + +   R+GR   +  C+
Sbjct: 422 RCPILVATAVAARGLDISNVKHVI-----NFDLPSDIEEYVHRIGRTGRVGFCL 470


>gi|68468357|ref|XP_721738.1| hypothetical protein CaO19.1661 [Candida albicans SC5314]
 gi|68468600|ref|XP_721619.1| hypothetical protein CaO19.9230 [Candida albicans SC5314]
 gi|74627413|sp|Q5AJD0|DBP5_CANAL RecName: Full=ATP-dependent RNA helicase DBP5
 gi|46443542|gb|EAL02823.1| hypothetical protein CaO19.9230 [Candida albicans SC5314]
 gi|46443670|gb|EAL02950.1| hypothetical protein CaO19.1661 [Candida albicans SC5314]
          Length = 540

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 157/365 (43%), Gaps = 51/365 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+K QE A+  +L +  +      I Q   G+GKT    + M + V+      Q + ++P
Sbjct: 173 PSKIQEKALPLLLSNPPRN----MIGQSQSGTGKTAAFSLTMLSRVDPTIKMPQCLCLSP 228

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E I    + T I  +++  N        A+ R +   A +++GT  +  D 
Sbjct: 229 TRELARQTLEVITTMGKFTNITTQLVVPN--------AIPRGSSVNAQVLVGTPGIAIDL 280

Query: 390 IQYYKLIL-----VIVDEQHRF----GVQQRLKLTQKATAPHV-LLMTATPIP---RTLV 436
           I+  +L L      ++DE        G+  +    +KA    V L++ +   P   R   
Sbjct: 281 IRRRQLNLSKMKVFVLDEADNMLEAQGLGDQAIRVKKALPRGVQLVLFSATFPTEVREYA 340

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRID---EVIERLKVVLSEGKKAYWICPQIE 493
              + D +  ++ ++      IK + +         EV+  L  +L+ G    ++     
Sbjct: 341 ERLVPDANSLELKQEELNVDGIKQLYMDCRSEQHKFEVLCELYGLLTIGSSIIFV----- 395

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           EKKE+      +      +    +++++HG + + D++ ++D F+ G  K+LI T V+  
Sbjct: 396 EKKET-----ADVLYGKMKKEGHTVSVLHGGLDNTDRDRLIDDFREGRSKVLITTNVLAR 450

Query: 554 GIDVVDASIIIIEN--AEHFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           GID+   S+++  +   + +G       LH++ GR GR   +   I   H    + SY  
Sbjct: 451 GIDIASVSMVVNYDMPTDKYGKPDPSTYLHRI-GRTGRFGRVGVSISFIH---DRRSYDI 506

Query: 608 LSVLK 612
           L  +K
Sbjct: 507 LMAIK 511


>gi|312880591|ref|ZP_07740391.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM
           12260]
 gi|310783882|gb|EFQ24280.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM
           12260]
          Length = 561

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 168/402 (41%), Gaps = 60/402 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I+Q   GSGKTL   + +   +E G    Q ++++P   LAQQ     +       I   
Sbjct: 46  IVQARTGSGKTLAFALPLLQRMERGERTPQVLVLSPTRELAQQTAREFQWVGGEMGIRPA 105

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHR 405
            + G M    + ++L       A +++GT     D ++           LIL   D    
Sbjct: 106 SLVGGMDMDRQIRSL----RDGAAVVVGTPGRVLDHLRRGTLRPEGIQSLILDEGDHMLD 161

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDID----ISKITEKPAGRKPI- 458
            G +  L+  ++   T     L +AT +P  +V  +   ++    IS +T+  A  + I 
Sbjct: 162 LGFRDELESIMSALGTVERTWLFSAT-MPEDVVTLARKYLNAPRKISLVTDA-ARHEDIA 219

Query: 459 -KTVIIPINRIDEVIERLKVVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            +  +IP  R  E +    V+L E  K+A   C    E +E   R   E F ++      
Sbjct: 220 QRAYVIPSRRRFEGL--ANVLLCEHPKRALLFCATRMETQELAERLGDEGFRAM------ 271

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               +HG M+  ++ + ++SF+ G   LL+AT V   G+D+   S +I      +GL   
Sbjct: 272 ---ALHGDMTQRERNNALESFRRGRVDLLVATDVAARGLDIDGLSHVI-----QYGLPGC 323

Query: 577 HQL----RGRVGR-GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
            +      GR GR G E  + ILL     ++ +    S++ +T     +  E L      
Sbjct: 324 LETFIHRSGRTGRAGHEGRNVILLT----AREARQFKSLVSHT----ALDIEWLPAPDAS 375

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIA-----RKDAKHILT 668
           E+ GI ++   K L+  PE  ++  E A     R+D + +L 
Sbjct: 376 EVEGISRAEFEKTLLESPEDEEAYREWAQQLLQREDTEELLA 417


>gi|58426933|gb|AAW75970.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 482

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 129/292 (44%), Gaps = 44/292 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + ++K      N ++
Sbjct: 67  IAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQVGKQLRKLATGIPNMKL 126

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +V  +TG MP   +  +LE  AH   H+++GT    Q+  +   L L     +++DE  R
Sbjct: 127 VV--LTGGMPLGPQLASLE--AH-DPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADR 181

Query: 406 F---GVQQRLKLTQKATAPH--VLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPI 458
               G ++ ++        H   LL +AT   I RTL    L D              PI
Sbjct: 182 MLDMGFEEPIREIASRCDKHRQSLLFSATFPDIIRTLAREILKD--------------PI 227

Query: 459 KTVIIPINRIDEVIERL-KVVLSEGKKAYW-----ICPQIEEKKESNFRSVVERFNSLHE 512
           +  +   +   E+ ++  +V  +  +KA         P+      +  + V E   SL E
Sbjct: 228 EITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLLRFTPESSVVFCNTRKEVDEVAGSLQE 287

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              S++A+ HG M   D++ V+  F N +C +L+A+ V   G+DV D S ++
Sbjct: 288 FGFSALAL-HGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVV 338


>gi|84624218|ref|YP_451590.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|161898981|ref|YP_201355.2| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188576177|ref|YP_001913106.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84368158|dbj|BAE69316.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188520629|gb|ACD58574.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 458

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 129/292 (44%), Gaps = 44/292 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + ++K      N ++
Sbjct: 43  IAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQVGKQLRKLATGIPNMKL 102

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +V  +TG MP   +  +LE  AH   H+++GT    Q+  +   L L     +++DE  R
Sbjct: 103 VV--LTGGMPLGPQLASLE--AH-DPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADR 157

Query: 406 F---GVQQRLKLTQKATAPH--VLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPI 458
               G ++ ++        H   LL +AT   I RTL    L D              PI
Sbjct: 158 MLDMGFEEPIREIASRCDKHRQSLLFSATFPDIIRTLAREILKD--------------PI 203

Query: 459 KTVIIPINRIDEVIERL-KVVLSEGKKAYW-----ICPQIEEKKESNFRSVVERFNSLHE 512
           +  +   +   E+ ++  +V  +  +KA         P+      +  + V E   SL E
Sbjct: 204 EITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLLRFTPESSVVFCNTRKEVDEVAGSLQE 263

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              S++A+ HG M   D++ V+  F N +C +L+A+ V   G+DV D S ++
Sbjct: 264 FGFSALAL-HGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVV 314


>gi|226313318|ref|YP_002773212.1| primosomal protein N' [Brevibacillus brevis NBRC 100599]
 gi|226096266|dbj|BAH44708.1| primosomal protein N' [Brevibacillus brevis NBRC 100599]
          Length = 811

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 20/202 (9%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F+P   QE  +  ILQ +        +L G  GSGKT V L A+   +E G +A+ + P 
Sbjct: 274 FTPL--QEEVLTPILQSIESGTYASYLLHGVTGSGKTEVYLEAIERTLEKGREAIFLVPE 331

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDS 389
             L  Q    ++++       V ++   + Q  R     +I   Q  +++G   A+F   
Sbjct: 332 IALTPQ---MVERFKARFGADVAVLHSALSQGERFDEWRKIIRKQVKVVVGARSAIFAP- 387

Query: 390 IQYYKLILVIVDEQHRFGVQQ---------RLKLTQKATAPHVLLM-TATPIPRTLVLTS 439
             +  + L+++DE+H    +Q          + L +      VL+M +ATP   T  L +
Sbjct: 388 --FRNVGLIVIDEEHESSYKQEETPRYHAREVALWRAKENQGVLVMGSATPALETYALAT 445

Query: 440 LGDIDISKITEKPAGRKPIKTV 461
            G  ++ ++ E+  G +P+  V
Sbjct: 446 RGRYELLRMPER-VGNRPMPEV 466


>gi|291527120|emb|CBK92706.1| replication restart DNA helicase PriA [Eubacterium rectale M104/1]
          Length = 753

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 9/131 (6%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILA 334
           +Q+S +  I  D++   R   +++G  GSGKT V +  +A  +++G QA+++ P I +  
Sbjct: 209 AQQSVVDAIEGDIAAGLRNTYLIKGVTGSGKTEVYMELIAHCIQSGRQAIVLIPEIALTY 268

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYY 393
           Q    F  ++       V II   +    R    ER  +G   I+IG   ALF     + 
Sbjct: 269 QTVMRFFARFGNR----VSIINSRLSNGERYDQFERAKNGDIDIMIGPRSALF---TPFS 321

Query: 394 KLILVIVDEQH 404
            L L+I+DE+H
Sbjct: 322 NLGLIIIDEEH 332


>gi|303278630|ref|XP_003058608.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459768|gb|EEH57063.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 471

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 155/381 (40%), Gaps = 66/381 (17%)

Query: 264 KILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKTLVALIAMAAA 317
           KIL +I F     PT  Q  AI  IL          R + G  + GSGKT    I M   
Sbjct: 56  KILLDIRFHEYDKPTPIQAQAIPIILSG--------RDVLGCAETGSGKTAAFSIPMIQH 107

Query: 318 V--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKAL 368
                      G  A++MAP   LAQQ  +  K ++++++     I+ G    + +R  L
Sbjct: 108 CLEQDPIKRGDGPFAIVMAPTRELAQQIEKEAKVFSRSSKGFKTTIVVGGTNMSDQRSDL 167

Query: 369 ERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRLK-LTQKAT 419
            +       + + T       L Q +    ++ LVI+DE  R    G + +++ + Q   
Sbjct: 168 RQ----GVEVCVATPGRLIDHLHQGNTNLGRVSLVILDEADRMLDMGFEPQIREVMQNLP 223

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH  L+ +  +P  +   SL     +    KP   K +  V +P   + + +E+L    
Sbjct: 224 TPHQTLLFSATMPAEV--ESLA----ADYLNKPVKVK-VGAVSVPTANVAQHLEKL---- 272

Query: 480 SEGKKAYWICPQI-EEKKESN-----------FRSVVERFNSLHEHFTS---SIAIIHGR 524
            + +K   +C  + EEK E+            F     R + + E   +   S A  HG 
Sbjct: 273 VDAQKVDRLCELLLEEKAEAEKFGGSLPMTVVFVERKARADEVMELLNAEGVSAAAFHGG 332

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
            S  ++E+ +  +KNG C +L AT V   G+DV   + ++  +        +H++ GR G
Sbjct: 333 RSQQEREAALSDYKNGKCSVLCATDVAARGLDVKGIAHVVNLDMPRMFEDYVHRV-GRTG 391

Query: 585 RGEEISSCILLYHPPLSKNSY 605
           R          Y     ++SY
Sbjct: 392 RAGMTGRATSFY---TDRDSY 409


>gi|149010613|ref|ZP_01831984.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|303255825|ref|ZP_07341866.1| putative helicase [Streptococcus pneumoniae BS455]
 gi|303266290|ref|ZP_07352181.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS457]
 gi|147765094|gb|EDK72023.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|301801607|emb|CBW34305.1| putative helicase [Streptococcus pneumoniae INV200]
 gi|302597209|gb|EFL64314.1| putative helicase [Streptococcus pneumoniae BS455]
 gi|302644220|gb|EFL74476.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS457]
          Length = 447

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 136/315 (43%), Gaps = 31/315 (9%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT-- 356
            GSGKT   L+ +   ++      QAVI AP   LA Q Y+  ++ + ++ + V ++   
Sbjct: 47  TGSGKTHTFLLPIFQQLDEASDSVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYV 106

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQR 411
           G   +A   + +E++   Q HI+IGT     D ++      +K    +VDE         
Sbjct: 107 GGTDKA---RQIEKLESNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGF 163

Query: 412 LKLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           L+   K           ++ +AT IP+ L         + K    P   K IKT  +  +
Sbjct: 164 LETVDKIAGSLPKDLQFMVFSAT-IPQKLQPF------LKKYLSNPVMEK-IKTKTVISD 215

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHG 523
            ID  +   K    +  + Y +   ++      F +   R + LH + T+    +A IHG
Sbjct: 216 TIDNWLISTKG-HDKNAQIYQLTQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHG 274

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            ++  +++ +M+  +N   + ++AT +   GID+   S +I +         +H++ GR 
Sbjct: 275 DIAPRERKRIMNQVQNLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRT 333

Query: 584 GRGEEISSCILLYHP 598
           GR     + I LY P
Sbjct: 334 GRNGLPGTAITLYQP 348


>gi|73965233|ref|XP_861802.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 12 [Canis
           familiaris]
          Length = 486

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 140 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKST 199

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 200 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  +  ++G +++S      A
Sbjct: 256 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------A 309

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + +++I  ++ ++SE           +E K   F     R + L 
Sbjct: 310 NHNILQIVDVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELT 358

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 359 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 418

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 419 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 461


>gi|327536242|gb|AEA95076.1| DNA replication factor Y [Enterococcus faecalis OG1RF]
          Length = 810

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++IVDE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIVDEEHEASYKQ 405


>gi|302038923|ref|YP_003799245.1| DEAd-box RNA helicase [Candidatus Nitrospira defluvii]
 gi|300606987|emb|CBK43320.1| DEAD-box RNA helicase [Candidatus Nitrospira defluvii]
          Length = 576

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 140/349 (40%), Gaps = 46/349 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ----AVIMA 328
           PT  Q  AI  +L+      R L + Q   G+GKT    + +   +  G +    A+++ 
Sbjct: 42  PTPIQREAIPPLLE-----GRDL-LGQAATGTGKTAAFALPLLQRIAHGPRQRPTALVLV 95

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA---- 384
           P   LA Q  E +++Y +  +I V  + G      + +AL R       +I+ T      
Sbjct: 96  PTRELAVQVSEAVQRYGKELRIGVLALYGGQAMGPQLQALRR----GVEVIVATPGRALD 151

Query: 385 -LFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
            L + +++   L +V++DE       G    L   L Q        L +AT  PR   + 
Sbjct: 152 HLRRKTLKLADLQVVVLDEADEMLDMGFADDLDAILEQTPAGKQTALFSATMPPR---IA 208

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIP-INRIDEVIERLKVV--------LSEGKKAYWIC 489
           S+    +    +    R+P+K    P + +   V+ R   V        ++  K A   C
Sbjct: 209 SIARRHLKNPVDVTIAREPVKAGAAPRVQQTAYVVARQHKVSALARVLDIATPKSALVFC 268

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      R  V+   +           IHG MS + ++ VM +F++G  +LL+AT 
Sbjct: 269 ---------RTRLEVDEVTAALNGRGYRAEAIHGGMSQVQRDRVMQAFRSGQTELLVATD 319

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           V   G+D+   S +I  +        +H++ GR GR     + + +  P
Sbjct: 320 VAARGLDIPSVSHVINYDLPSSLEVYVHRI-GRTGRAGREGAAMTIIEP 367


>gi|126308848|ref|XP_001379329.1| PREDICTED: similar to DDX5 protein [Monodelphis domestica]
          Length = 865

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 155/397 (39%), Gaps = 67/397 (16%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E   P NV   IA++        PT  Q       L  +     M+ + Q   GSGKTL 
Sbjct: 349 EANFPANVMDVIARQNFT----EPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLS 398

Query: 310 ALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L+     +          G   +++AP   LAQQ  +   +Y++  ++    I G  P+
Sbjct: 399 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPK 458

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLK 413
             + + LER       I I T     D ++  K  L     +++DE  R    G + +++
Sbjct: 459 GPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIR 514

Query: 414 ------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KITEKPAGRKPI 458
                       L   AT P  +   A    +  +  ++G +++S    I +       I
Sbjct: 515 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQ-------I 567

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS- 517
             V   + + +++I  ++ ++SE           +E K   F     R + L        
Sbjct: 568 VDVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELTRKMRRDG 616

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
                IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  +  +     
Sbjct: 617 WPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDY 676

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 677 IHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 712


>gi|67920440|ref|ZP_00513960.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Crocosphaera watsonii WH 8501]
 gi|67857924|gb|EAM53163.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Crocosphaera watsonii WH 8501]
          Length = 480

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 145/346 (41%), Gaps = 41/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           SPT+ QE AI  IL+     N +L   Q   G+GKT    + +   ++      Q +I+ 
Sbjct: 25  SPTEIQEKAIPLILES----NDILG--QSQTGTGKTAAYSLPILEQIDTKNPNVQTLILT 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  E +K ++   ++ +  + G      + ++LER       I++GT     D
Sbjct: 79  PTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIRSLER----GVQIVVGTPGRVID 134

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
            ++  KL+L  +        DE    G    +K  L +     +    +AT +PR     
Sbjct: 135 LLERKKLVLDCLRWAVLDEADEMLSMGFIDDVKTILRKTPETRNTACFSAT-MPR----- 188

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE-EKKE 497
            + D+ +++  + P      +    P +    + + L  V     K   + P +E E  E
Sbjct: 189 EIRDL-VNQFLKSPVTVSVERKQAAPTH----IDQHLYYVPRGWSKRKALQPILEMEDPE 243

Query: 498 SNF-----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           S       +       +  +    S+   HG +S   +E ++  F++G  KL++AT +  
Sbjct: 244 SAIIFVRTKQTASELTTRLQEIGHSVDEYHGNLSQSQRERLVYRFRDGKIKLVVATDIAA 303

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G+DV + S +I  +        +H++ GR GR  +  + I L  P
Sbjct: 304 RGLDVENLSHVINYDLPDNSETYIHRI-GRTGRAGKTGTAISLIEP 348


>gi|332076039|gb|EGI86505.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
           GA41301]
          Length = 411

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 136/315 (43%), Gaps = 31/315 (9%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT-- 356
            GSGKT   L+ +   ++      QAVI AP   LA Q Y+  ++ + ++ + V ++   
Sbjct: 47  TGSGKTHTFLLPIFQQLDEASDSVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYV 106

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQR 411
           G   +A   + +E++   Q HI+IGT     D ++   L +      +VDE         
Sbjct: 107 GGTDKA---RQIEKLESNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGF 163

Query: 412 LKLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           L+   K           ++ +AT IP+ L         + K    P   K IKT  +  +
Sbjct: 164 LETVDKIAGSLPKDLQFMVFSAT-IPQKLQPF------LKKYLSNPVMEK-IKTKTVISD 215

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHG 523
            ID  +   K    +  + Y +   ++      F +   R + LH + T+    +A IHG
Sbjct: 216 TIDNWLISTKG-HDKNAQIYQLTQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHG 274

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            ++  +++ +M+  +N   + ++AT +   GID+   S +I +         +H++ GR 
Sbjct: 275 DIAPRERKRIMNQVQNLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRT 333

Query: 584 GRGEEISSCILLYHP 598
           GR     + I LY P
Sbjct: 334 GRNGLPGTAITLYQP 348


>gi|326928709|ref|XP_003210518.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Meleagris gallopavo]
          Length = 1027

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 133/312 (42%), Gaps = 43/312 (13%)

Query: 302 VGSGKTLVALIAM------AAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+  L+ M        A+E G    AVIM P   LA Q  +  KK+++   + V 
Sbjct: 414 TGSGKTIAFLLPMFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVV 473

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G    + +   L+R     A II+ T     D +           ++  V++DE  R
Sbjct: 474 CVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADR 529

Query: 406 F---GVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
               G + Q +++          +M +   PR   + +L    +SK         PI+  
Sbjct: 530 MFDMGFEPQVMRIVDNVRPDRQTVMFSATFPR--AMEALARRILSK---------PIEVQ 578

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS 517
           +   + +   +E+  +V+ E  K   +   +   +E      F    E  + L +    +
Sbjct: 579 VGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHYQEKGSVIIFVDKQEHADGLLKDLMRA 638

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +    
Sbjct: 639 SYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYED 698

Query: 575 QLHQLRGRVGRG 586
            +H+  GR GR 
Sbjct: 699 YVHRA-GRTGRA 709


>gi|288556690|ref|YP_003428625.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288547850|gb|ADC51733.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 487

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 133/318 (41%), Gaps = 30/318 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I++   GSGKT    I +   V   E   QA+++ P   LA Q  E I    +  ++   
Sbjct: 51  IVKAQTGSGKTAAYAIPLCEKVIWEENKPQALVLTPTRELAAQVKEEIINIGRFKRVKAA 110

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI--VDEQHR 405
            + G   Q++ R+ +E     + HI+ GT     D I+   L       LVI   D+   
Sbjct: 111 AVYGK--QSYERQKIE--LKQKNHIVTGTPGRVLDHIEKNSLDTTNIRFLVIDEADQMLN 166

Query: 406 FG-VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK---ITEKPAGRKPIKTV 461
            G + Q   +  +  A  V ++ +   P  +   S   + + +   I    A R  I   
Sbjct: 167 MGFIDQVEAIIARIPANRVTMLFSATFPYGVEELSKRHMSLPEYIEINSTEASRPNINHA 226

Query: 462 IIPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           II +   DE  + LK V+++E   +  I  Q + + +   +S+      L   +   +  
Sbjct: 227 IIEV-EADEKTDVLKKVLITENPDSCIIFCQTQVEVDKLEKSL------LRSQY--PVEK 277

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG M   D+  VMD FK G  + L+AT V   GIDV D  ++I  +        +H++ 
Sbjct: 278 LHGGMKQEDRFDVMDRFKEGAFRYLVATGVAGRGIDVADIDLVINYDVPAEKENYVHRI- 336

Query: 581 GRVGRGEEISSCILLYHP 598
           GR GR  +      L  P
Sbjct: 337 GRTGRAGKKGKARTLVTP 354


>gi|321467260|gb|EFX78251.1| hypothetical protein DAPPUDRAFT_213150 [Daphnia pulex]
          Length = 487

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 141/337 (41%), Gaps = 43/337 (12%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL   +     +          G  A+I+AP   LAQQ     K +  +++I   
Sbjct: 106 TGSGKTLAYTLPAIVHINHQPYLEPGDGPIALILAPTRELAQQISSTAKDFGSSSRIRNT 165

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G  P+  + + +ER       I+I T     D ++  K  L     +++DE  R   
Sbjct: 166 CVFGGAPKGPQLRDIER----GVEIMIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLD 221

Query: 407 -GVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            G + ++ K+ ++       LM +   P+ +       LT    I++  +T   A    +
Sbjct: 222 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVRQLAEEFLTDYIQINVGSLTLS-ANHNIL 280

Query: 459 KTVIIPINRIDEVIERLKVVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +  II + +  E   +L  +L E G +        +E K   F     + +S+       
Sbjct: 281 Q--IIDVCQEHEKETKLMTLLQEIGAE--------DENKTIIFAETKRKVDSITRAMRRD 330

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 IHG  +  +++ V++ F++G   +L+AT V   G+DV D   +I  +  +    
Sbjct: 331 GWPAMCIHGDKAQPERDWVLNEFRSGKAPILVATDVAARGLDVDDVKFVINFDYPNCSED 390

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            +H++ GR GR +   +    + P  SK +   ++VL
Sbjct: 391 YVHRI-GRTGRSQRTGTAYTFFTPNNSKQAQDLVNVL 426


>gi|262173110|ref|ZP_06040787.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
 gi|261890468|gb|EEY36455.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
          Length = 412

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 118/278 (42%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     Q +++ P   LA Q  E +        +    + G
Sbjct: 44  ANTGSGKTLAYGLPLLERLKTSPEQQTLVLLPTRELAMQVSEVLTHVGTPLGLNTLCLCG 103

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +A ++ AL        +I++ T      L Q  +   ++  +++DE  R        
Sbjct: 104 GVDKAEQQNALAE----NPNILVATTGRLFDLTQSGLSLNRVTTLVLDEADR-------- 151

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 152 LLDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAV 211

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSSIAI---IHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +  +   +HG  S
Sbjct: 212 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGVVATALHGDKS 271

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             ++E+ +  FKNGT ++LIAT ++  GI +    ++I
Sbjct: 272 QAEREAALAEFKNGTTQVLIATDLLARGIHIEQLPVVI 309


>gi|195493240|ref|XP_002094331.1| GE20258 [Drosophila yakuba]
 gi|194180432|gb|EDW94043.1| GE20258 [Drosophila yakuba]
          Length = 789

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 134/322 (41%), Gaps = 47/322 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   +  M   V    Q         +I+AP   L+ Q Y   KK+ +   + V 
Sbjct: 315 TGSGKTAAFIWPMLMHVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVV 374

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRF-- 406
              G   +  + KALE+     A II+ T     D ++       ++  +++DE  R   
Sbjct: 375 CCYGGGSKWEQSKALEQ----GAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFH 430

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITE---KPAGRKPIKT 460
            G + +++       P    L+ +AT   R   L      D  +I +     A +   ++
Sbjct: 431 MGFEPQVRSICNHVRPDRQCLMFSATFKKRIERLARDVLTDPVRIVQGDLNEANQDITQS 490

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           V +   P+ + + ++  L   LSEG    ++  +++ +  SN   +++ +N L       
Sbjct: 491 VYVFPNPLQKWNWLLVHLVKFLSEGSVLIFVTKKVDAETVSN-NLLIKEYNCL------- 542

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA--- 574
             ++HG M   D+  V+  FK   C +L+AT V   G+D     I  I+N  ++  A   
Sbjct: 543 --LLHGDMDQADRNKVITQFKRKECDILVATDVAARGLD-----IPHIKNVVNYDTARDI 595

Query: 575 QLHQLR-GRVGRGEEISSCILL 595
           + H  R GR GR  E  +   L
Sbjct: 596 ETHTHRIGRTGRAGEKGNAFTL 617


>gi|168828898|gb|ACA33927.1| vasa [Salvelinus leucomaenis]
          Length = 662

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 79/383 (20%), Positives = 152/383 (39%), Gaps = 60/383 (15%)

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           E  + + + RN+  S  K      K  +  ++    ++   Q   GSGKT+  L+ +   
Sbjct: 230 EAALCESLNRNVSKSGYKKPTPVQKHGIPIIAAGRDLMACAQ--TGSGKTVAFLLPILQQ 287

Query: 318 VEAGGQA------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           +   G A            +I+AP   L  Q Y   +K+   T +   ++ G +   H  
Sbjct: 288 LMVDGVAASKFSEVQEPEVIIVAPTRELINQIYMEARKFAHGTCVRPVVVYGGISTGH-- 345

Query: 366 KALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
             +  I  G  +++ GT     D      I   KL  +++DE  R      L +  +   
Sbjct: 346 -TIREILKG-CNVLCGTPGRLMDIIGRGKIGLSKLRYLVLDEADRM-----LDMGFEPAM 398

Query: 421 PHVLLMTATPIP---RTLVLTSLGDIDISKITEK--------------PAGRKPIKTVII 463
            +V+     P     +TL+ ++    DI K+                       ++ V++
Sbjct: 399 RNVVGSPGMPAKEDRQTLMFSATYPEDIQKLAGDFLKKDYLFLAVGVVGGACSDVEQVVV 458

Query: 464 PINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            + +    D+++E LK   SE    +     +E K++++F   +  F    +  T+SI  
Sbjct: 459 QVTKFSKRDQLLEVLKTTGSERTMVF-----VETKRQADF---IATFLCQEKVNTTSI-- 508

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG     ++E  +  F++G C +L+AT+V   G+D+ D   I+  +  +     +H++ 
Sbjct: 509 -HGDREQREREQALGDFRSGKCPVLVATSVAARGLDIKDVQHIVNFDLPNNIDEYVHRI- 566

Query: 581 GRVGRGEEISSCILLYHPPLSKN 603
           GR GR       +  + P    N
Sbjct: 567 GRTGRCGNTGRAVCFFDPEADSN 589


>gi|328873234|gb|EGG21601.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 418

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 133/310 (42%), Gaps = 39/310 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I    +V+      Q +I++P   LAQQ  + +        + V 
Sbjct: 85  IAQAQSGTGKTATFSIGALQSVDVSIKNPQVIILSPTRELAQQIQKVVMALGGFMSVQVH 144

Query: 354 IITGNMPQAHRRKALERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
              G    +   + LE+  H      G+   +I   AL  ++ Q   LIL   DE    G
Sbjct: 145 SFVGQKTISEDVRRLEQGVHIASGTPGRVIDLISRKAL--NTRQIKMLILDEADEMLSLG 202

Query: 408 VQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            QQ++    +   P   ++L++AT       LT     D+  +TE+     P++   I +
Sbjct: 203 FQQQINDVYRYLPPATQIVLVSAT-------LTQ----DVVSMTERFM-TDPVR---ILL 247

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEHFT 515
            R +  +E +K      +K  W    + +  +S          N +S V+   +      
Sbjct: 248 KRDELTLEGIKQFFVSVEKEEWKFGTLCDIYDSLTITQAVIFCNTKSKVDALTNKMREAN 307

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            ++A +HG M   ++E ++ SF++G  ++LI T ++  GIDV   S++I  +        
Sbjct: 308 FTVASLHGDMDQKEREEIIRSFRSGENRVLITTDILARGIDVQQVSLVINYDLPMDRENY 367

Query: 576 LHQLRGRVGR 585
           +H++ GR GR
Sbjct: 368 IHRI-GRSGR 376


>gi|124806246|ref|XP_001350668.1| DEAD-box helicase [Plasmodium falciparum 3D7]
 gi|23496794|gb|AAN36348.1| DEAD-box helicase [Plasmodium falciparum 3D7]
          Length = 742

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 36/292 (12%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   L  Q  + IK + +N  I    + G +P+ ++   L++     A II+ T 
Sbjct: 430 GLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKK----GADIIVATP 485

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTAT-PIP 432
               D     +I   K I V++DE  R    G +++L+  +TQ      +L +TAT P  
Sbjct: 486 GRLLDFLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPEQ 545

Query: 433 RTLVLTSLGDIDISKI----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
              +       D  KI     E  A +   + VII        I+  K +L       W+
Sbjct: 546 VRKLAYDFCSYDPVKIQIGKNELTANKNIEQNVIIS-----SSIDMKKKLLD------WL 594

Query: 489 CPQIEEKKESNF----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
               E  K   F    R+       L  H  ++++I HG     +++ +++++K   C +
Sbjct: 595 KENYENNKILIFCDTKRNCDNLCKELRYHQYNALSI-HGDKQQRERDRILNNYKTDRCNI 653

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           L+AT V   G+D+ + S++I  +  +     +H++ GR GR  +    IL +
Sbjct: 654 LVATDVASRGLDIKNISVVINYDIPNTIEDYIHRI-GRTGRAGKKGKSILFF 704


>gi|320527333|ref|ZP_08028518.1| DEAD/DEAH box helicase [Solobacterium moorei F0204]
 gi|320132357|gb|EFW24902.1| DEAD/DEAH box helicase [Solobacterium moorei F0204]
          Length = 455

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 134/316 (42%), Gaps = 37/316 (11%)

Query: 302 VGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITG 357
            GSGKT   LI +   V+      Q +I AP   LA Q YE  K  T+   ++ V +  G
Sbjct: 48  TGSGKTHAYLIPIMEKVDPNKDEAQVIITAPTRELATQIYEMAKVMTEVIPELRVRLYVG 107

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQD------SIQYYKLILVIVDEQH---RFGV 408
                 R K +E++   Q HI++GT    +D      +++  K  +++VDE      +G 
Sbjct: 108 GR---ERSKDVEQLEKSQPHIVVGTPGRIKDLFLNGGALRIDKASMLVVDEADMTLEYGF 164

Query: 409 QQRLKLTQKATAPHV-LLMTATPIPRTL---VLTSLGDIDISKITEKPAGRKPIKTVIIP 464
              +         H+ +L  +  +P  L   +   +      +I EK      IK V++P
Sbjct: 165 LDEIDAFAGRLGDHLQMLAFSATMPDQLKPFINKYMHHPITYQIGEKVRFNPDIKHVLVP 224

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
                   E +  +L  G + Y        ++E++  +   R N +      S++ IHG 
Sbjct: 225 CYH-HSYAETILSILP-GFQPYVCLIFANTRQEASVIAEELRKNKV------SVSEIHGD 276

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLR 580
           ++   ++  M S  N     ++AT +   GID+ + + II     E+ E++    +H+  
Sbjct: 277 LTSRKRKQAMKSISNAEHTYVVATDLAARGIDIGEVTHIISCGFPEDLEYY----IHRA- 331

Query: 581 GRVGRGEEISSCILLY 596
           GR GR     +C  LY
Sbjct: 332 GRTGRAGSKGTCYALY 347


>gi|299143970|ref|ZP_07037050.1| primosomal protein N` [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518455|gb|EFI42194.1| primosomal protein N` [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 794

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 24/188 (12%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKD-----ILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           ++  K +   P+   +  ES I +     +L  +   N+   ++ G  GSGKT + L   
Sbjct: 242 ELYDKFIERNPYKDKQKLESKILNDEQLKVLNGIFNSNKETDLIYGLTGSGKTEIYLKLA 301

Query: 315 AAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
              ++AGGQ +++ P IG+  Q    F+ ++       V ++   +    R    ++I +
Sbjct: 302 EEVIKAGGQVIVLVPEIGLTPQMIERFMGRFENK----VSVLHSKLSTGERYDQWQKIKN 357

Query: 374 GQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH----RFGVQQR---LKLTQKAT---APH 422
           G   +++G   A+F     +  L LVI+DE+H    RF    R   L++ QK        
Sbjct: 358 GYVDVVVGARSAIFA---PFKNLKLVIIDEEHDSSYRFHNALRYDTLEVAQKRMNILNGK 414

Query: 423 VLLMTATP 430
           V++ +ATP
Sbjct: 415 VIIGSATP 422


>gi|288904629|ref|YP_003429850.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           gallolyticus UCN34]
 gi|288731354|emb|CBI12905.1| putative ATP-dependent RNA helicase, DEAD/DEAH box family
           [Streptococcus gallolyticus UCN34]
          Length = 447

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 136/323 (42%), Gaps = 41/323 (12%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           +   GSGKT   L+ +   ++      Q VI AP   LA Q Y+  K+  + ++   EI 
Sbjct: 44  ESKTGSGKTHTFLLPIFEKLDENSNNVQVVITAPSRELATQIYQATKQIAEKSE--TEIR 101

Query: 356 TGN-MPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQ 409
             N +    + + +E++   Q HI+IGT     D      ++ YK    +VDE       
Sbjct: 102 VANYVGGTDKLRQIEKLQSSQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDM 161

Query: 410 QRLKLTQK--ATAP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
             L    K   T P    +L+ +AT IP+ L         + K    P   K IKT  + 
Sbjct: 162 GFLDTVDKIAGTLPKDVQILVFSAT-IPQKLQPF------LKKYLTNPVMEK-IKTTTVI 213

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSS- 517
            + ID  +     V ++G+        +E  K  N      F +  ER + LH +  S+ 
Sbjct: 214 ADTIDNWL-----VSTKGRDKN--AQILEITKALNPYLAMIFVNTKERADELHSYLVSNG 266

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +A IHG +   +++  M+  K  + + ++AT +   GID+   S +I +         
Sbjct: 267 LKVAKIHGDIPPRERKRTMNQIKKLSYEYIVATDLAARGIDIEGVSHVINDAIPQDLSFF 326

Query: 576 LHQLRGRVGRGEEISSCILLYHP 598
           +H++ GR GR       I LY P
Sbjct: 327 VHRV-GRTGRNGLNGIAITLYKP 348


>gi|154420635|ref|XP_001583332.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121917573|gb|EAY22346.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 449

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 161/401 (40%), Gaps = 59/401 (14%)

Query: 260 KIAQKILR----NIPFSPTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIA 313
           K+A+ I+R    N   +PTK Q   I  IL  QD+              GSGK++  LI 
Sbjct: 13  KLAKPIIRALNENNFTNPTKVQAETIPKILSGQDICA--------TAITGSGKSMAFLIP 64

Query: 314 MAAAVEA-----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           +   +       G +A+IM+P   LAQQ          +  I   ++ G +    +R+ L
Sbjct: 65  IVQKLLTFRGLPGPKALIMSPTRELAQQLKAVCDMLAAHCAITSTLVIGGVSDEEQRELL 124

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLI------LVIVDEQHRF---GVQQRLK--LTQK 417
                    IIIGT   F DSI   K++        ++DE  R    G + +L   ++Q 
Sbjct: 125 T----PAPDIIIGTPGRFIDSIFNAKVLKLEHLQFFVLDEADRLLGKGFESQLNTIVSQL 180

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-- 475
                 LL TAT          L D  ++K+  K   +   K  I P   ++  I ++  
Sbjct: 181 PEKHQTLLFTAT----------LND-QVAKLATKIQKKSSEKISINPYMELNPNITQMFI 229

Query: 476 KVVLSEGKKAYWI--CPQIEEKKESNF---RSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           K    E +  Y +  C  + + K   F   +++      L ++   + A +H  +S   +
Sbjct: 230 KTKKEERRLPYLVALCRNMCKDKTLVFFPTKALAHHVFLLFKNLGIASAELHADLSQTAR 289

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII---IENAEHFGLAQLHQLRGRVGRGE 587
              ++ F+    + L+A+ +   GID+ D   +I   I N     L +     GR GR  
Sbjct: 290 NEAIEQFRESKVQYLLASDLAARGIDIPDIEYVINFTIPNE----LERYIHRTGRTGRAG 345

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           +  + I +Y  P  K    ++      E  F+   ++L+ +
Sbjct: 346 KKGTAISMYVTPEEKRVMKKMQKNSPGEVQFMTIPDNLRDQ 386


>gi|291526146|emb|CBK91733.1| replication restart DNA helicase PriA [Eubacterium rectale DSM
           17629]
          Length = 753

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 9/131 (6%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILA 334
           +Q+S +  I  D++   R   +++G  GSGKT V +  +A  +++G QA+++ P I +  
Sbjct: 209 AQQSVVDAIEGDIAAGLRNTYLIKGVTGSGKTEVYMELIAHCIQSGRQAIVLIPEIALTY 268

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYY 393
           Q    F  ++       V II   +    R    ER  +G   I+IG   ALF     + 
Sbjct: 269 QTVMRFFARFGNR----VSIINSRLSNGERYDQFERAKNGDIDIMIGPRSALF---TPFS 321

Query: 394 KLILVIVDEQH 404
            L L+I+DE+H
Sbjct: 322 NLGLIIIDEEH 332


>gi|331091588|ref|ZP_08340424.1| hypothetical protein HMPREF9477_01067 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403615|gb|EGG83171.1| hypothetical protein HMPREF9477_01067 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 742

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 17/168 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           TK QE+AI+    D  +  R   ++ G  GSGKT V +  +   +  G QAV + P   L
Sbjct: 206 TKEQENAIRLFKDDYDKGIRKTYLIHGVTGSGKTGVYMEMIEKVIREGKQAVFLIPEIAL 265

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
               Y+ + ++ Q     V I+   +    +   + R  +G+  ++IG   ALF     +
Sbjct: 266 T---YQTVMRFYQRFGDRVSIMHSRLSDGEKYDQMMRAKNGEIDVMIGPRSALF---TPF 319

Query: 393 YKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP 430
            KL L+++DE+H          R+  ++  +   +     V+L +ATP
Sbjct: 320 EKLGLIVIDEEHEATYKSEQIPRYHARETARRRAEMEGASVVLGSATP 367



 Score = 37.4 bits (85), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 14/94 (14%)

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
           +E ++ V+ EGK+A ++ P+I    ++  R         ++ F   ++I+H R+SD +K 
Sbjct: 243 MEMIEKVIREGKQAVFLIPEIALTYQTVMR--------FYQRFGDRVSIMHSRLSDGEKY 294

Query: 532 SVMDSFKNGTCKLLIA------TTVIEVGIDVVD 559
             M   KNG   ++I       T   ++G+ V+D
Sbjct: 295 DQMMRAKNGEIDVMIGPRSALFTPFEKLGLIVID 328


>gi|238924699|ref|YP_002938215.1| primosomal protein N (replication factor Y) - superfamily II
           helicase [Eubacterium rectale ATCC 33656]
 gi|238876374|gb|ACR76081.1| primosomal protein N (replication factor Y) - superfamily II
           helicase [Eubacterium rectale ATCC 33656]
          Length = 753

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 9/131 (6%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILA 334
           +Q+S +  I  D++   R   +++G  GSGKT V +  +A  +++G QA+++ P I +  
Sbjct: 209 AQQSVVDAIEGDIAAGLRNTYLIKGVTGSGKTEVYMELIAHCIQSGRQAIVLIPEIALTY 268

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYY 393
           Q    F  ++       V II   +    R    ER  +G   I+IG   ALF     + 
Sbjct: 269 QTVMRFFARFGNR----VSIINSRLSNGERYDQFERAKNGDIDIMIGPRSALF---TPFS 321

Query: 394 KLILVIVDEQH 404
            L L+I+DE+H
Sbjct: 322 NLGLIIIDEEH 332


>gi|150016695|ref|YP_001308949.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903160|gb|ABR33993.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 480

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 157/363 (43%), Gaps = 54/363 (14%)

Query: 260 KIAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           KI+ +IL++I      +P+K QE  I +IL +         I++   GSGKT    I + 
Sbjct: 9   KISDEILKSIEGLGYKNPSKVQEKVIPEILLNKDI------IVKSQTGSGKTAAFGIPLC 62

Query: 316 AAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
             V+      Q +++ P   LA Q  E I    +  +I    I G  P + + + L++  
Sbjct: 63  EKVDWNENIPQILVLTPTRELAVQVSEDITNIGRFKRIKSVSIFGKEPISEQERKLKQ-- 120

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFG-VQQRLKLTQKATAPHV 423
             + H+++GT     D I    L L  +        DE    G + Q   + ++     V
Sbjct: 121 --KTHVVVGTPGRILDHIDRGSLNLAQIKYFVIDEADEMLNMGFIGQVEGIIRRLPKKKV 178

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN----RIDEVIERLKVVL 479
            ++ +  IP  + +  L D  ++K  +     + +    I  N      +E IE+L  +L
Sbjct: 179 TMLFSATIPEEIKV--LCDKYMNKPVDISINNQKLINENIDHNLYYTNYEEKIEKLNDIL 236

Query: 480 SEGKKAYWICPQIEEKKESN--FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVM 534
                       I EK E+   F    E  +++ +   S   S+  IHG M   ++ S+M
Sbjct: 237 ------------ITEKPETVVIFAKTKENVDTVFQWLKSKGYSVNRIHGGMLQKERLSIM 284

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
           D F+ G  ++L++T +   GIDV   + +I  +      A +H++ GR GR    G+ IS
Sbjct: 285 DGFRLGDFRILVSTDLASRGIDVKGITHVINYDLPVEKEAYVHRI-GRTGRAGEKGKAIS 343

Query: 591 SCI 593
            C+
Sbjct: 344 FCV 346


>gi|157373021|ref|YP_001481010.1| primosome assembly protein PriA [Serratia proteamaculans 568]
 gi|157324785|gb|ABV43882.1| primosomal protein N' [Serratia proteamaculans 568]
          Length = 731

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 24/197 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ +     VE++
Sbjct: 220 LLAGVTGSGKTEVYLSVLENILAKGKQALVLVPEIGLTPQT----IARFRERFNAPVEVL 275

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              +  + R     R   G+A I+IGT  ALF     + +L ++I+DE+H    +Q+   
Sbjct: 276 HSGLNDSERLAVWLRARSGEAAIVIGTRSALF---TPFSRLGVIIIDEEHDSSYKQQEGW 332

Query: 415 TQKATAPHV----------LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
              A    V          ++ TATP   TL    LG     K+T++    KP    +I 
Sbjct: 333 RYHARDLAVFRAREENIPMVMGTATPALETLHNVQLGKYRQLKLTQRAGNAKPATQHLID 392

Query: 465 INRIDEVIERLKVVLSE 481
           +  +      LKV LS+
Sbjct: 393 LKGLP-----LKVGLSQ 404


>gi|294497529|ref|YP_003561229.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294347466|gb|ADE67795.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 481

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 133/321 (41%), Gaps = 36/321 (11%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  +    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCELVNWEENKPQALVLTPTRELAAQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFAKQKVELKQ----KTHIVVGTPGRVLDHIEKETLALEKIRYLVIDEADEMLN 160

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
              + Q   + Q   +  V ++ +  +P           DI +++ K   +KP+  V I 
Sbjct: 161 MGFIDQVEAIIQHLPSERVTMLFSATLPE----------DIEELSRKYM-KKPVD-VEIK 208

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEH---FTSS 517
            N +        V+  E ++ + +   +   +  +    F    E+ N+L +    F   
Sbjct: 209 ANGLTTSTIDHSVISVENERKFELLKDVTTVENPDSCIIFCRTQEQVNTLLDDLDDFGYP 268

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              IHG M   D+  VM+ FK G  + L+AT V   GID+ + + +I  +      + +H
Sbjct: 269 CDKIHGAMVQEDRFEVMNDFKKGKFRYLVATDVAARGIDIDNITHVINYDLPLEKESYVH 328

Query: 578 QLRGRVGRGEEISSCILLYHP 598
           +  GR GR  +    I    P
Sbjct: 329 RT-GRTGRAGKKGKAITFVTP 348


>gi|195030620|ref|XP_001988166.1| GH11018 [Drosophila grimshawi]
 gi|193904166|gb|EDW03033.1| GH11018 [Drosophila grimshawi]
          Length = 389

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 124/291 (42%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q    +    +  ++   
Sbjct: 57  IAQAQSGTGKTATFSIAILQQIDTAVRECQALILAPTRELATQIQRVVMALGEYMKVHSH 116

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-------QYYKL-ILVIVDEQHR 405
              G      R  A  RI     H+++GT     D I       Q  KL +L   DE   
Sbjct: 117 ACIGGTNV--REDA--RILESGCHVVVGTPGRVYDMINRKVLRTQSIKLFVLDEADEMLS 172

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + +++   K   P   V+L++AT  P  L ++            +   R+P+    I
Sbjct: 173 RGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVS------------RCFMREPVS---I 217

Query: 464 PINRIDEVIERLKVVLSEGKKAYW----ICPQIEE---KKESNFRSVVERFNSLHEHFTS 516
            + + +  +E +K      K+  W    +C   +     +   F +   + + L +  +S
Sbjct: 218 LVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSS 277

Query: 517 ---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   D+E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 278 HNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 328


>gi|226021|prf||1406327A growth regulated nuclear 68 protein
          Length = 594

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 153/396 (38%), Gaps = 65/396 (16%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E   P NV   IA++        PT  Q       L  +     M+ + Q   GSGKTL 
Sbjct: 78  EANFPANVMDVIARQNFT----EPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLS 127

Query: 310 ALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L+     +          G   +++AP   LAQQ  +   +Y +  ++    I G  P+
Sbjct: 128 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 187

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ---- 409
             + + LER       I I T     D ++  K  L     +++DE  R    G +    
Sbjct: 188 GPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIR 243

Query: 410 --------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                    R  L   AT P  +   A    +  +  ++G +++S      A    ++ V
Sbjct: 244 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------ANHNILQIV 297

Query: 462 II--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517
            +   + + +++I  ++ ++SE           +E K   F     R + L         
Sbjct: 298 DVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELTRKMRRDGW 346

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  +  +     +
Sbjct: 347 PAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYI 406

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 407 HRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 441


>gi|224068070|ref|XP_002188600.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Taeniopygia
           guttata]
          Length = 1031

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 133/311 (42%), Gaps = 43/311 (13%)

Query: 302 VGSGKTLVALIAM------AAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+  L+ M        A+E G    AVIM P   LA Q  +  KK+++   + V 
Sbjct: 418 TGSGKTIAFLLPMFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVV 477

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G    + +   L+R     A II+ T     D +           ++  V++DE  R
Sbjct: 478 CVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADR 533

Query: 406 F---GVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
               G + Q +++          +M +   PR   + +L    +SK         PI+  
Sbjct: 534 MFDMGFEPQVMRIVDNVRPDRQTVMFSATFPR--AMEALARRILSK---------PIEVQ 582

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS 517
           +   + +   +E+  +V+ E  K   +   +   +E      F    E  + L +    +
Sbjct: 583 VGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHYQEKGSVIIFVDKQEHADGLLKDLMRA 642

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +    
Sbjct: 643 SYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYED 702

Query: 575 QLHQLRGRVGR 585
            +H+  GR GR
Sbjct: 703 YVHRA-GRTGR 712


>gi|172058473|ref|YP_001814933.1| helicase domain-containing protein [Exiguobacterium sibiricum
           255-15]
 gi|171990994|gb|ACB61916.1| helicase domain protein [Exiguobacterium sibiricum 255-15]
          Length = 404

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 138/321 (42%), Gaps = 43/321 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q+   + I++ + Q+ R+L  +    G+GKT +    +  A+    + +I AP   +
Sbjct: 88  TSDQQRIAEAIVRTIDQRKRLL--VHAVCGAGKTPMLFPGIERALSTNRRVLITAPRADV 145

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            ++    +++  Q    IV +  G+      R  +  I     H +I   A F       
Sbjct: 146 VRELTGHLRRAFQQA-TIVSLFGGS----EDRLGIGDITISTTHQLIHYRACFD------ 194

Query: 394 KLILVIVDEQHRFGVQQRLKL---TQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKI 448
              +V +DE   F  +    L    ++ATAP   ++L++ATP  R   L ++      ++
Sbjct: 195 ---VVFIDEVDAFPYRTDRTLHRYVRQATAPGASLILLSATPSLRDRRLPTV------RL 245

Query: 449 TEKPAGRK-PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             +  G   P   + +P  + D V     V+   GK      PQ+E          +E +
Sbjct: 246 MRRYHGFPLPTPRLQVPYGKHDVVDW---VLTHAGKPRLLFVPQVE---------ALETW 293

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            +  +    +   +H   +D D+ + +  F+  T  +L+ TT++E G+ +++  + +++ 
Sbjct: 294 QTCLQQQGITCETVHA--ADPDRITKVARFRQTT-GVLLTTTILERGVTLINVQVAVLDA 350

Query: 568 AEHFGLAQLHQLRGRVGRGEE 588
              F  A L Q+ GRVGR  +
Sbjct: 351 DHSFSSAALIQISGRVGRSAD 371


>gi|325956686|ref|YP_004292098.1| ATP-dependent DNA helicase RecQ [Lactobacillus acidophilus 30SC]
 gi|325333251|gb|ADZ07159.1| ATP-dependent DNA helicase RecQ [Lactobacillus acidophilus 30SC]
          Length = 588

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 69/326 (21%), Positives = 127/326 (38%), Gaps = 59/326 (18%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK+L   +    A+   G  ++++P+  L +   + +K+      I    +    PQ
Sbjct: 39  TGAGKSLCYQVP---ALMNAGVTLVISPLISLMKDQIDTLKQ----NGINAAALNSATPQ 91

Query: 362 AHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQH---------RFG 407
                 L +   G+  +I  T        F+  + +  + LV VDE H         R  
Sbjct: 92  EEVNPILRQAYEGKIKLIYITPERLAIDYFRYQLNFLDIDLVAVDEAHCISQWGHDFRPA 151

Query: 408 VQQRLK-LTQKATAPHVLLMTATPIP--------------RTLVLTSLGDIDISKITEKP 452
            +Q L  +    + P++L +TAT  P              + +++TS    ++S      
Sbjct: 152 YRQLLDGINSLKSRPNILALTATATPAVQDDICEQLNIPKQNMIITSFARPNLS------ 205

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
                 K V  P N    + + +K+   E    Y           +N R  VE       
Sbjct: 206 -----FKVVNSPQNTPLYIAQYIKMHPDEAGIIY-----------TNTRKKVESLTDYLA 249

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               S+   HG M   +++ V ++F+    ++++AT    +GID  +   +I  ++    
Sbjct: 250 KKGISVGAYHGGMETKERDEVQEAFQFDQVQVIVATNAFGMGIDKSNVRFVIHASSAR-N 308

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
           +   +Q  GR GR  E S  I++YHP
Sbjct: 309 IESYYQEAGRAGRDGEESEAIMIYHP 334


>gi|221105846|ref|XP_002169876.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 473

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 135/321 (42%), Gaps = 56/321 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+K QE+A+  +L D    N M  I Q   G+GKT   ++AM + V+A     QA+ ++P
Sbjct: 106 PSKIQETALPMLLAD--PPNNM--IAQSQSGTGKTAAFVLAMLSRVDASKPYPQALCLSP 161

Query: 330 IGILAQQHYEFIKKY----TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
              LAQQ  + ++K      ++   +   I GN     R+           HIIIGT   
Sbjct: 162 TFELAQQTGKVLEKMGKFLIEDGLKVSYAIRGNKLSIGRK--------CNDHIIIGTPGS 213

Query: 386 FQDSIQYYKL-----ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D +  YK      I + V ++    + Q+    Q      +L     P  + L+ ++ 
Sbjct: 214 VLDWVMRYKAFDPQKITIFVLDEADVMISQQGHQDQSIRIKKLL----KPDCQLLLFSAT 269

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
            D ++               V+I + + +E ++ +K       + Y +C  +E K E+  
Sbjct: 270 YDSEVMNFANSVVS----DAVVIRLRKEEESLDNIK-------QFYVMCDSVEAKYEALA 318

Query: 499 ------------NFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCK 543
                        F    +  N L E  +    ++ ++ G +    +  +++ F++G  K
Sbjct: 319 NLYGALTIGQTMVFCHTKKSVNWLAEKLSKDGHAVGLLTGDLEIEQRIDILNRFRDGKEK 378

Query: 544 LLIATTVIEVGIDVVDASIII 564
           +LIAT V   GIDV   +I+I
Sbjct: 379 VLIATNVAARGIDVEQVTIVI 399


>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040059|gb|ACT56855.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 465

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 130/316 (41%), Gaps = 54/316 (17%)

Query: 302 VGSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            G+GKT   ++ M   +E G       + +I+ P   LA Q  +  +KY +N  + V ++
Sbjct: 47  TGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQ 410
            G +P   + K LER     A ++I T     D     KL++     +++DE  R     
Sbjct: 107 IGGIPFEAQNKKLER----GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR----- 157

Query: 411 RLKLTQKATAPHVLLMTA-TPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
              +      P++  +T+  P  R TL+ ++    ++ K++E    + P +  +   +  
Sbjct: 158 ---MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSST 213

Query: 469 DEVIERLKVVL------------------SEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            E IE   V                       K     C Q         ++VV   +SL
Sbjct: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK--------KNVVNLCHSL 265

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            E    S+  IHG +    +  ++ +FK GT +L++A+ +   G+D+ D   +   +  +
Sbjct: 266 -EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN 324

Query: 571 FGLAQLHQLRGRVGRG 586
                +H++ GR GR 
Sbjct: 325 RAENYIHRI-GRTGRA 339


>gi|126649550|ref|ZP_01721791.1| hypothetical protein BB14905_06418 [Bacillus sp. B14905]
 gi|126593875|gb|EAZ87798.1| hypothetical protein BB14905_06418 [Bacillus sp. B14905]
          Length = 382

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 145/335 (43%), Gaps = 44/335 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKTL  ++ +   V       Q +I+AP   LA Q  E I+++T  T I V+
Sbjct: 38  VAESPTGSGKTLAYVLPLLNKVNGAKKQTQGLIVAPSQELAMQIVEVIREWTAGTDITVQ 97

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE-----Q 403
            + G    A + + L++    +  I++GT     +  +  KL L     VI+DE      
Sbjct: 98  QLIGGANSARQIEKLKK----KPTIVVGTPGRLNELARAGKLKLKEIETVILDECDQLLS 153

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             + V  +  +   A    V++++AT      ++ S    +  +   KP     +  VI 
Sbjct: 154 REYRVVIKSFIEGSAFGRQVVVVSATITEEIELVASRMMFEPVRFKIKPEDMLKVGKVIH 213

Query: 464 PINRIDE-----VIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHFTS 516
              +++E      + RL    +EG +A      I++   KE+             ++ ++
Sbjct: 214 SFVKVEERDKTEFLRRLS--HTEGLRALAFVNNIDQLLMKETKL-----------QYRSA 260

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I  +H  M   +++  +D+F+ G  ++LIAT +   G+D+   + +I  +        L
Sbjct: 261 PIVTLHSDMKKEERKKALDAFRKGDARILIATDIAARGLDIAGLTHVIHVDVPRTIEQYL 320

Query: 577 HQLRGRVGR----GEEISSCILLYHPPLSKNSYTR 607
           H+  GR GR    GE ++  +L Y    +   +TR
Sbjct: 321 HR-SGRTGRAGADGEVLT--LLSYQDEKAYKKWTR 352


>gi|74693276|sp|Q755W0|FAL1_ASHGO RecName: Full=ATP-dependent RNA helicase FAL1
          Length = 398

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 166/383 (43%), Gaps = 84/383 (21%)

Query: 256 NVEGKIAQKILRNIPFSPT----KSQESAIKDILQ------DMSQKNRMLRILQG-DV-- 302
           N +GK+  K    +P SPT    K QE+ ++ I           Q   + +I++G DV  
Sbjct: 6   NQDGKLKVKTSSKLPVSPTFESMKLQENLLRGIYGYGFEAPSAIQSRAITQIIRGKDVIA 65

Query: 303 ----GSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
               G+GKT    I M   +++     QA++++P   LA Q  + ++       ++    
Sbjct: 66  QAQSGTGKTATFTIGMLQVIDSSSKDLQALVLSPTRELAAQISQVVRNLGDYMNVVALAC 125

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDE-----QHR 405
           TG       ++ + ++  G  H++ GT     D I+        + ++++DE        
Sbjct: 126 TGGKA---LQQDISKVNKG-CHVMSGTPGRVLDMIKRRIINTRHVKMLVLDEADELLSET 181

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G +Q+L    T+  ++  V++++AT     L +T            K     P+K ++ 
Sbjct: 182 LGFKQQLYDIFTKLPSSVQVVVVSATMSKVVLEVT------------KKFMSDPVKILV- 228

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL------------- 510
                    +R +V L EG K Y I     +K+E  F ++ + ++SL             
Sbjct: 229 ---------KRDEVSL-EGIKQYHINV---DKEEWKFDTLCDLYDSLTITQCVIFCNTKK 275

Query: 511 ------HEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
                 H+   ++ A+  IHG M   D++ VM  F++G+ ++LI+T V   GIDV   S+
Sbjct: 276 KVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFRSGSSRVLISTDVWARGIDVQQVSL 335

Query: 563 IIIENAEHFGLAQLHQLRGRVGR 585
           +I  +        +H++ GR GR
Sbjct: 336 VINYDLPELLENYIHRI-GRSGR 357


>gi|298674479|ref|YP_003726229.1| DEAD/H associated domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298287467|gb|ADI73433.1| DEAD/H associated domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 944

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 164/397 (41%), Gaps = 61/397 (15%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV- 318
           KI Q +      SPT+ QE A   IL+D +       +L    GSGKT  +++ +   + 
Sbjct: 13  KIQQALKEQGFVSPTEPQEKAFPVILKDNNT------LLIAPTGSGKTEASVLPVFNKIL 66

Query: 319 ------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                   G  A+ + P+  L +     IK + +   I V +  G+  +  R+K     +
Sbjct: 67  EKSDDERKGVSALYITPLRALNRDMLSRIKWWGEYLGIRVMVRHGDTSKHERQKQ----S 122

Query: 373 HGQAHIIIGT----HALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
                ++I T     A+F     + +++Y  +  VIVDE H  G  +R   +Q       
Sbjct: 123 QNPPDMLITTPETLQAMFTGKRLRGNLEY--VTHVIVDEIHEMGTSKRG--SQLTLGLER 178

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGR-KPIKTVIIPI-------------NRID 469
           L+  +    R  +  ++G+ ++  I    AG+ + I  V +P+              + D
Sbjct: 179 LVEISGNFKRIGLSATVGNPNL--IASFLAGKDRSISVVEVPMLSLMEFDILYPETTQKD 236

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGR 524
             I R      E          I EK ES     N R   E   S      + I++ HG 
Sbjct: 237 IEISRKTGFDPEFASHLRSIQDIVEKHESTLIFVNTRQSAESLASGFNIIDAPISVHHGS 296

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +S   +    DSFKNG  K LI T+ +E+GID+ +   +I    ++    Q+ +L  RVG
Sbjct: 297 LSFEARLEAEDSFKNGNLKGLICTSSMELGIDIGNIDHVI----QYGSPRQVSRLLQRVG 352

Query: 585 RG----EEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
           R      E+S   ++   P   ++   +++ K T DG
Sbjct: 353 RAGHKIHEVSRGTIISTGP--DDNTESMAITKATLDG 387


>gi|227937255|gb|ACP43273.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Gorilla gorilla]
          Length = 660

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 170/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK----------- 260
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 128 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGSNCPPHIENFSD 182

Query: 261 --IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             + + I+ NI  +    PT  Q+ AI  I      K  ++   Q   GSGKT   L+ +
Sbjct: 183 IDMGEIIMGNIELTRYTRPTPVQKHAIPII----KGKRDLMACAQ--TGSGKTAAFLLPI 236

Query: 315 AA------------AVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            +            AV+  G+         ++++AP   LA Q YE  +K++  +++   
Sbjct: 237 LSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 296

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 297 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 352

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 353 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 411

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  +D+    L ++ + G+ +  +   +E KK ++    +E F   HE +  
Sbjct: 412 NITQKVVWVEDLDKRSFLLDLLGATGRDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 464

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 465 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVI 512


>gi|254360561|ref|ZP_04976710.1| primosomal replication factor n prime [Mannheimia haemolytica
           PHL213]
 gi|153091101|gb|EDN73106.1| primosomal replication factor n prime [Mannheimia haemolytica
           PHL213]
          Length = 732

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 94/425 (22%), Positives = 168/425 (39%), Gaps = 111/425 (26%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++   Q +++ P IG+  Q     ++++     + ++++
Sbjct: 218 LLNGVTGSGKTEVYLQLIETVLKREEQVLLLVPEIGLTPQT----VQRFKARFNVEIDVL 273

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
             NM +  R  A  R  +G++ I+IGT  ALF    Q+ KL ++I+DE+H    +Q+   
Sbjct: 274 HSNMNETERLNAWLRAKNGESAIVIGTRSALF---TQFQKLGVIILDEEHDSSFKQQDGW 330

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE----KPAGRK--- 456
                   +   + A  P ++L +ATP      L SL ++   K  E      AG     
Sbjct: 331 RYHARDLAVVRAKNANIP-IVLGSATP-----SLESLHNVQNGKFIELTLTARAGNAQLA 384

Query: 457 -----PIKTVIIPINRIDEVIERLKVVLSEGKKAY------------------WIC---- 489
                 +KT  +     + ++  +K  L +G +                    W+C    
Sbjct: 385 NQQIIDLKTQRVTAGLSERLLSMMKTQLEQGNQVMLFLNRRGFAPVLLCHECGWVCECEA 444

Query: 490 ---PQIEEKKESNFR---SVVERFNSLHEHFTSSIAII------------------HGRM 525
              P    +K+   R      +R          S  +I                  H ++
Sbjct: 445 CNKPFTYHQKQKVLRCHHCATQRVIPRQCGHCGSTHLITTGVGTEQLEQVLNQQFPHYQV 504

Query: 526 SDIDKESV---------MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF----- 571
           + ID++S          + + + G  ++LI T ++  G    + +++ I N +       
Sbjct: 505 TRIDRDSTARKGALENHLTAIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTD 564

Query: 572 -----GLAQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF-LIAEED 624
                 LAQL+ Q+ GR GR E+    +L  H P     +  L  L   E G+   A+E 
Sbjct: 565 FRAEEKLAQLYIQVAGRAGRAEKKGEVVLQTHYP----DHPLLKTL--LEQGYRAFADEA 618

Query: 625 LKQRK 629
           LK R+
Sbjct: 619 LKMRQ 623


>gi|308808280|ref|XP_003081450.1| putative RNA helicase [Oryza sativa (ISS) [Ostreococcus tauri]
 gi|116059913|emb|CAL55972.1| putative RNA helicase [Oryza sativa (ISS) [Ostreococcus tauri]
          Length = 734

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 133/316 (42%), Gaps = 49/316 (15%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            GSGKTL     M A  +   Q          +++AP   LAQQ  +      + + +  
Sbjct: 367 TGSGKTLA--FGMPALTQIRSQPPCKPGQPICLVLAPTRELAQQTAKVFDDAGEASGVRC 424

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             + G  P+  ++ A++  A G A +I+ T    +D      I+  ++ ++++DE  R  
Sbjct: 425 VCVYGGAPKYEQKNAMK--AGGGAAVIVATPGRLRDFMEEGVIKLDRVTMLVLDEADRML 482

Query: 406 -FGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             G +  ++    AT A    +M +   P  + + SL    +        G + +K    
Sbjct: 483 DLGFEPEIRAIAGATRADRQTVMFSATWP--MSVQSLASEFMCNPVRVRIGSEGLKASQS 540

Query: 464 PINRIDEVIE------RLKVVLSEGKKAYWICPQ-----IEEKKESNFRSVVERFNSLHE 512
            I +I EV+E       L  V+ +   +   CP+     + +K+ +N          LH+
Sbjct: 541 -ITQIVEVVEPQDKDRHLARVMKQYLGSPKDCPRTLIFGLYKKECAN----------LHQ 589

Query: 513 HFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             +       IHG MS  D+E  +++FK GT ++LIAT V   G+D+     +I      
Sbjct: 590 RLSREWPAVCIHGDMSQADRERSVEAFKKGTSRILIATDVAARGLDIKGVEYVINYTFPL 649

Query: 571 FGLAQLHQLRGRVGRG 586
                +H++ GR GR 
Sbjct: 650 TTEDYVHRI-GRTGRA 664


>gi|256088516|ref|XP_002580378.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665945|emb|CAZ36617.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 959

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 140/333 (42%), Gaps = 43/333 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
           SP+  QES+I   L   + ++ M R   G   +G   V ++          QA+I+ P  
Sbjct: 573 SPSPIQESSIPIAL---THRDIMARAKNGTGKTGAYSVPVLESIDTTINKIQAIILVPTR 629

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-- 389
            LA Q  +   +  ++T I + ++ G       +  L R++    H++IGT     D   
Sbjct: 630 ELALQTSQICIELAKHTAIKIMLVIGG---TLLKDDLIRLSQ-TVHVLIGTPGRLVDLLS 685

Query: 390 ---IQYYKLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTAT-PIPRTLVLT 438
              I   K  +V++DE  +        GV++ L    K+    VL+ +AT P+     + 
Sbjct: 686 RGLIDISKCKIVVLDEADKLLSEELISGVEEILNGVDKSR--QVLVYSATYPV----TVQ 739

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S  +  +         R P +  ++    +  + E    V  E  K + +     + + S
Sbjct: 740 SFMNQHL---------RNPYQINLMETLTLKGITEYYAYV-QEKHKVHCLNTLFSKLQIS 789

Query: 499 N---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F S  +R   L +  T    S   IH RMS  D+  V   F+NG C+ L+ T ++ 
Sbjct: 790 QSIIFCSSAQRVELLAKKITQLGYSCYYIHARMSQQDRNRVFHDFRNGCCRNLVCTDLLT 849

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            GID+   +++I  +   +    LH++ GR GR
Sbjct: 850 RGIDIPTVNVVINFDFPKYSETYLHRI-GRSGR 881


>gi|156087226|ref|XP_001611020.1| eukaryotic initiation factor 4A-3 (eIF4A-3)  [Babesia bovis T2Bo]
 gi|154798273|gb|EDO07452.1| eukaryotic initiation factor 4A-3 (eIF4A-3) , putative [Babesia
           bovis]
          Length = 395

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 139/334 (41%), Gaps = 45/334 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  Q+ AIK IL           I+Q   G+GKT V  +     V       Q ++++P
Sbjct: 45  PSAVQQRAIKPILDGRDV------IIQSQSGTGKTCVFCLGALQIVNPASKQTQVLLLSP 98

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH------GQAHIIIGTH 383
              LA+Q  +          + V    G    +   KALE   H      G+ + +I   
Sbjct: 99  TRELAEQSQKVCLALGDYCNVEVHCCIGGKRVSDDIKALESGVHIVSGTPGRVNHMIAER 158

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLG 441
            L   +I+  ++IL   DE    G + ++    +   P   V+L++AT +P+ +V     
Sbjct: 159 HLNTRNIK--QMILDEADEMLNRGFKDQVYSIYRYLPPTLQVILVSAT-LPQEVV----- 210

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--- 498
                +ITEK     P + ++    R +  ++ +K      +K  W    + +  ES   
Sbjct: 211 -----EITEKFMN-NPFRVLV---KRDELTLDGIKQFFVAVEKEQWKFDTLCDLYESLII 261

Query: 499 -------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N R  V+      +    ++  +HG MS  ++  +M  F+ G  ++LI+T + 
Sbjct: 262 TQAVVFCNTREKVDWLAKRMQDSNFTVCKMHGEMSQKERNDIMQRFRRGESRVLISTDIW 321

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
             G+DV   S+++  +  +     +H++ GR GR
Sbjct: 322 GRGLDVQQVSLVVNYDLPNSRENYIHRI-GRSGR 354


>gi|52430509|gb|AAH82849.1| DDX5 protein [Xenopus laevis]
          Length = 608

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 138 TGSGKTLSYLLPGIVHINHQPFLQRGDGPILLVLAPTRELAQQVQQVAAEYGRACRLRST 197

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 198 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLD 253

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    R  V  ++G +++S      A
Sbjct: 254 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYVHINIGALELS------A 307

Query: 454 GRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +  +  + D+++  ++ ++SE           +E K   F     R + L 
Sbjct: 308 NHNILQIVDVCNDGEKDDKLVRLMEEIMSE-----------KENKTIVFVETKRRCDDLT 356

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 357 RRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIATDVASRGLDVEDVKFVINYDY 416

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 417 PNSSEDYIHRI-GRTARSSKTGTAYTFFTPGNIKQVNDLISVLR 459


>gi|148229654|ref|NP_001084230.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus laevis]
 gi|8163810|gb|AAF73861.1|AF218580_1 p68 RNA helicase [Xenopus laevis]
          Length = 608

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 138 TGSGKTLSYLLPGIVHINHQPFLQRGDGPILLVLAPTRELAQQVQQVAAEYGRACRLRST 197

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 198 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLD 253

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    R  V  ++G +++S      A
Sbjct: 254 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYVHINIGALELS------A 307

Query: 454 GRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +  +  + D+++  ++ ++SE           +E K   F     R + L 
Sbjct: 308 NHNILQIVDVCNDGEKDDKLVRLMEEIMSE-----------KENKTIVFVETKRRCDDLT 356

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 357 RRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIATDVASRGLDVEDVKFVINYDY 416

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 417 PNSSEDYIHRI-GRTARSSKTGTAYTFFTPGNIKQVNDLISVLR 459


>gi|332799423|ref|YP_004460922.1| primosomal protein N' [Tepidanaerobacter sp. Re1]
 gi|332697158|gb|AEE91615.1| primosomal protein N' [Tepidanaerobacter sp. Re1]
          Length = 731

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 87/445 (19%), Positives = 174/445 (39%), Gaps = 99/445 (22%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q++A+  I+++ +   R   ++ G  GSGKT V + A+   ++AG + +++ P I +
Sbjct: 200 TIEQQNALTTIIKNFNDSKRTT-LIYGVTGSGKTEVYIRAIENVLKAGKKVIMLVPEISL 258

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
             Q    F  ++   T     ++   + Q  R    +RI  G+A +++G  +     I+ 
Sbjct: 259 TPQMLSIFRSRFPGKTA----VLHSKLSQGERFDEWQRIYSGEALVVLGARSAIFAPIK- 313

Query: 393 YKLILVIVDEQHR----------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
             L ++I+DE+H           +  +   +   K     ++L +ATP   +    +  +
Sbjct: 314 -DLGMIIIDEEHESSYKNGEHPYYDARTVAEFRAKKQNASLVLGSATPSVESFYKAAKQE 372

Query: 443 IDISKITEKPAGRKPIKTVIIPI-------NR----------IDEVIERLKVVL------ 479
             ++K+T++ +GR   K  II +       NR          + E +E+ K ++      
Sbjct: 373 YSLAKLTKRVSGRSLPKLEIIDMREELKSGNRHIFSRKLLSGMKETLEKHKQIILFLNRR 432

Query: 480 ------------------------------SEGKKAYW--------ICPQIEEKKESNFR 501
                                           GK  Y         ICP+ + +    F 
Sbjct: 433 GHSTFVICRDCGFVLKCKYCDIALTYHFEDKSGKCHYCGYSIKAPDICPKCKSRNIRYFG 492

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDK----ESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  E+     + F      I        +    E ++ +FK G  ++LI T  +  G++ 
Sbjct: 493 AGTEKVEQEVKRFFPKCRTIRIDSDSTSRKGSLEKMLLNFKRGGAQILIGTQTVAKGLNF 552

Query: 558 VDASIIIIENAE------HFGLAQ-----LHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
            D +++ I +A+       F   +     + Q+ GR GRG+      ++Y    +  S+ 
Sbjct: 553 PDVALVGIISADTALNMPDFRSGERTFQLITQVAGRSGRGDTPG---MVYVQTYTPESFA 609

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEG 631
             +       GF   +E+LK R+E 
Sbjct: 610 IRAACNFDISGFY--QEELKIRREA 632


>gi|194868558|ref|XP_001972305.1| GG13958 [Drosophila erecta]
 gi|190654088|gb|EDV51331.1| GG13958 [Drosophila erecta]
          Length = 786

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 135/322 (41%), Gaps = 47/322 (14%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   +  M   V          G   +I+AP   L+ Q Y   KK+ +   + V 
Sbjct: 313 TGSGKTAAFIWPMLMHVMDQRQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVV 372

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRF-- 406
              G   +  + KALE+     A II+ T     D ++       ++  +++DE  R   
Sbjct: 373 CCYGGGSKWEQSKALEQ----GAEIIVATPGRMIDMVKMKATNLRRVTYLVLDEADRMFH 428

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPR--TLVLTSLGD-IDISKITEKPAGRKPIKT 460
            G + +++       P    L+ +AT   R   L    L D + I +     A +   ++
Sbjct: 429 MGFEPQVRSICNHVRPDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQS 488

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           V +   P+ + + ++  L   LSEG    ++  +++ +  SN   +++ +N L       
Sbjct: 489 VYVFPNPLQKWNWLLCHLVKFLSEGSVLIFVTKKVDAETVSN-NLLIKEYNCL------- 540

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA--- 574
             ++HG M   D+  V+  FK   C +L+AT V   G+D     I  I+N  ++  A   
Sbjct: 541 --LLHGDMDQADRNKVITQFKRKECDILVATDVAARGLD-----IPHIKNVVNYDTARDI 593

Query: 575 QLHQLR-GRVGRGEEISSCILL 595
           + H  R GR GR  E  +   L
Sbjct: 594 ETHTHRIGRTGRAGEKGNAFTL 615


>gi|19115766|ref|NP_594854.1| translation initiation factor eIF4A [Schizosaccharomyces pombe
           972h-]
 gi|1708418|sp|P47943|IF4A_SCHPO RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|1321961|emb|CAA56772.1| translation initiation factor eIF-4A [Schizosaccharomyces pombe]
 gi|2222814|gb|AAB61679.1| cell cycle control protein eIF-4A [Schizosaccharomyces pombe]
 gi|6318257|emb|CAB60237.1| translation initiation factor eIF4A [Schizosaccharomyces pombe]
          Length = 392

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 135/313 (43%), Gaps = 44/313 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AI  IL +         + Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 42  PSAIQQRAIMPILGERD------VLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH------GQAHIIIGTH 383
              LAQQ  + +        +      G         AL+   H      G+ H +I   
Sbjct: 96  TRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRR 155

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLG 441
           AL  D++Q +  +L   DE    G + ++    +   P   V+L++AT +P+        
Sbjct: 156 ALPTDAVQMF--VLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSAT-MPQ-------- 204

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW----ICPQIEEKKE 497
             D+ ++T K   R PI+   I + + +  +E +K      +K  W    +C   E    
Sbjct: 205 --DVLEVTTKFM-RDPIR---ILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTV 258

Query: 498 SN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +    F +   + + L E  T    +++ +HG M    ++++M  F+ G+ ++LI T ++
Sbjct: 259 TQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLL 318

Query: 552 EVGIDVVDASIII 564
             GIDV   S++I
Sbjct: 319 ARGIDVQQVSLVI 331


>gi|332995387|gb|AEF05442.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Alteromonas sp. SN2]
          Length = 837

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 136/326 (41%), Gaps = 35/326 (10%)

Query: 297 ILQGDVGSGKTLV----ALIAMAAAVEAGGQAVIMAPIGILAQQ-HYEFIKKYTQ-NTQI 350
           +L    G+GKTL     +L+ +A + + G   + ++P+  L Q  H   ++   + +  I
Sbjct: 61  LLIAPTGAGKTLSGFLPSLVELAQSPQQGLHTLYISPLKALTQDIHRNLLQPIEEMDLPI 120

Query: 351 IVEIITGNMP----QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
             E  TG+ P    Q  R+K    +      +++       D + + KL  VI+DE H  
Sbjct: 121 TAETRTGDTPSHKRQRQRKKPPNLLLTTPESLMLMLSYADADKL-FGKLKRVIIDETHSL 179

Query: 407 GVQQRLKLTQKATA---------PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
              +R      A A           V L      P TL     G    + I    AG KP
Sbjct: 180 VANKRGDFLSLALARLSVLSPEMKRVGLSATVAYPETLGAWLAGTEGTANIISVKAGEKP 239

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVER-FNSLHE 512
              ++   NR+       +  +++  KA      IE+ K +    N R+  E  F  L E
Sbjct: 240 KVEMLQSENRMPFGGFMARYAITDIYKA------IEDAKTTLVFVNTRAQSELIFQMLWE 293

Query: 513 HFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           H T++  IA+ HG +S   +        +G  + ++ T+ +E+GID  D   +I   A  
Sbjct: 294 HNTAALPIALYHGSLSKEQRRKTEAMMSSGLLRAVVCTSALELGIDWGDVDKVIQVGAPK 353

Query: 571 FGLAQLHQLRGRVG-RGEEISSCILL 595
            G+++L Q  GR   R +E S  +L+
Sbjct: 354 -GVSRLLQRIGRSNHRLDEPSEALLV 378


>gi|325977606|ref|YP_004287322.1| ATP-dependent RNA helicase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177534|emb|CBZ47578.1| ATP-dependent RNA helicase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 447

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 136/323 (42%), Gaps = 41/323 (12%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           +   GSGKT   L+ +   ++      Q VI AP   LA Q Y+  K+  + ++   EI 
Sbjct: 44  ESKTGSGKTHTFLLPIFEKLDENSNNVQVVITAPSRELATQIYQATKQIAEKSE--TEIR 101

Query: 356 TGN-MPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQ 409
             N +    + + +E++   Q HI+IGT     D      ++ YK    +VDE       
Sbjct: 102 VANYVGGTDKLRQIEKLKSSQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDM 161

Query: 410 QRLKLTQK--ATAP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
             L    K   T P    +L+ +AT IP+ L         + K    P   K IKT  + 
Sbjct: 162 GFLDTVDKIAGTLPKDVQILVFSAT-IPQKLQPF------LKKYLTNPVMEK-IKTTTVI 213

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSS- 517
            + ID  +     V ++G+        +E  K  N      F +  ER + LH +  S+ 
Sbjct: 214 ADTIDNWL-----VSTKGRDKN--AQILEITKALNPYLAMIFVNTKERADELHSYLVSNG 266

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +A IHG +   +++  M+  K  + + ++AT +   GID+   S +I +         
Sbjct: 267 LKVAKIHGGIPPRERKRTMNQIKKLSYEYIVATDLAARGIDIEGVSHVINDAIPQDLSFF 326

Query: 576 LHQLRGRVGRGEEISSCILLYHP 598
           +H++ GR GR       I LY P
Sbjct: 327 VHRV-GRTGRNGLNGIAITLYKP 348


>gi|317485703|ref|ZP_07944574.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
 gi|316923068|gb|EFV44283.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
          Length = 594

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 133/306 (43%), Gaps = 36/306 (11%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEII 355
           Q   G+GKT    + +   + +G   QA+++ P   LA Q  E + K   + + + V  I
Sbjct: 46  QAQTGTGKTAAFGLPILEKIASGKSVQALVLCPTRELAIQVSEELSKLAVHKRGVSVLPI 105

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---G 407
            G  P   + +AL   A G A +++GT     D +Q   L L     V++DE       G
Sbjct: 106 YGGQPIERQLRAL---AKG-AQVVVGTPGRVIDHLQRGTLRLNEARIVVLDEADEMLDMG 161

Query: 408 VQQRLKL---TQKATAPHVLLMTATPIP-RTLVLTSLGDIDISKITEKPAGRKPIKTV-- 461
            ++ ++L      A    VL     P P R L    L + ++  I  K      I+ V  
Sbjct: 162 FREDIELILEQSPADCQRVLFSATMPQPIRELSKRFLREPEMLTIAHKMLTVPAIEQVYY 221

Query: 462 -IIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            + P  ++D +    +V+ S+G +KA   C        +  RSV E    L +    +  
Sbjct: 222 EVRPYQKMDALC---RVLDSQGFRKALVFC--------ATKRSVDEITVHLQQRGYQADG 270

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG M+   ++ VM  F+    ++L+AT V   GIDV D   +I  +  H     +H++
Sbjct: 271 L-HGDMNQTQRDRVMSRFRTDGIEILVATDVAARGIDVDDVDAVINYDIPHDVEGYVHRI 329

Query: 580 RGRVGR 585
            GR GR
Sbjct: 330 -GRTGR 334


>gi|303240431|ref|ZP_07326948.1| ATP-dependent DNA helicase, RecQ family [Acetivibrio cellulolyticus
           CD2]
 gi|302591996|gb|EFL61727.1| ATP-dependent DNA helicase, RecQ family [Acetivibrio cellulolyticus
           CD2]
          Length = 1602

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 138/343 (40%), Gaps = 79/343 (23%)

Query: 302 VGSGKTLVALI-AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G GK++   + A+ + + + G  V+++P+  L +   + ++K      +    I G + 
Sbjct: 286 TGGGKSITFQVPALMSGINSKGLTVVISPLQSLMKDQVDNLEKAGITDAVT---INGLLD 342

Query: 361 QAHRRKALERIAHGQAHII-IGTHALFQDSIQYYKL----ILVIVDEQHRFG-------- 407
              + K+ ER+ +G A I+ I   AL   SI+   L    +  ++DE H F         
Sbjct: 343 PIEKAKSFERVENGSASILYISPEALRSKSIERLLLGRNVVRFVIDEAHCFSAWGQDFRV 402

Query: 408 -----------VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT------E 450
                      +Q+R  L +      V   TAT   +  V+  + +    K++       
Sbjct: 403 DYLYIGDFIKSIQERKNLEE---GIPVSCFTATAKQK--VIEDIREYFRQKLSIEMELFT 457

Query: 451 KPAGRKPIKTVIIP-------INRIDEVIERLK----VVLSEGKKAYWICPQIEEKKESN 499
             A R  +   +          N + ++IE+ K    + +S  KKAY +  ++       
Sbjct: 458 SGASRSNLHYKVFEKDNEEEKYNTVRDLIEQKKCPTIIYVSRTKKAYKLAQRLT------ 511

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                        H   S    HG+M   +K    D+F NG  ++++AT+   +G+D  D
Sbjct: 512 -------------HDGYSAKPYHGKMDKQEKSENQDAFVNGEVRIMVATSAFGMGVDKKD 558

Query: 560 ASIIIIENAEHF----GLAQLHQLRGRVGRGEEISS-CILLYH 597
             ++I     H+     L    Q  GR GR E IS+ C +L++
Sbjct: 559 VGMVI-----HYEISDSLENYVQEAGRAGRDETISADCYVLFN 596


>gi|87201324|ref|YP_498581.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM
           12444]
 gi|87137005|gb|ABD27747.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 804

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 130/335 (38%), Gaps = 58/335 (17%)

Query: 297 ILQGDVGSGKTLVA----LIAMAAAVEAGG--QAVIMAPIGILAQ--QHYEFIKKYTQNT 348
           +L  D G+GKTL      L+  A+A   G     + ++P+  LA   Q            
Sbjct: 36  LLVADTGAGKTLAGFLPTLVDFASATPPGDGLHTLYVSPLKALAHDVQRNLLAPVEEIGL 95

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF-------QDSIQYYKLILVIVD 401
            I VE  +G+ P    RKA +R      H+++ T           + +  +  L  VIVD
Sbjct: 96  PIRVETRSGDTPS--DRKARQRAK--PPHVLLTTPESLSLLLSYPEAATMFAGLRRVIVD 151

Query: 402 EQHRFGVQQRLKLTQ------KATAP---HVLLMTATPIPRTLV--LTSLGDIDISKITE 450
           E H F   +R  L        +A AP      L      PR     L+  GD    ++ +
Sbjct: 152 EVHAFATGKRGDLLALSLARLQAIAPGMRRAALSATVADPRDFCAWLSPGGDPGAVRLVD 211

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV---ERF 507
              G KP  +++ P +         + V   G  A W  PQ+ ++   N  ++V    RF
Sbjct: 212 GEPGAKPELSILNPED---------QRVPWGGHAAAWAVPQLYDEIRRNRTTLVFTNTRF 262

Query: 508 NSLHEHFTS----------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             L E+              I I HG +S   +  V  +   G  + L+ T  +++G+D 
Sbjct: 263 --LAEYIFQLLWDVNEDKLPIGIHHGSLSKEARRKVEGAMARGELRALVCTASLDLGVDW 320

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            D  +++   A   G ++L Q   R+GR      C
Sbjct: 321 GDVDLVVQMGAPK-GSSRLLQ---RIGRANHRLDC 351


>gi|119774410|ref|YP_927150.1| DEAD/DEAH box helicase-like protein [Shewanella amazonensis SB2B]
 gi|119766910|gb|ABL99480.1| DEAD/DEAH box helicase-like protein [Shewanella amazonensis SB2B]
          Length = 456

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 129/328 (39%), Gaps = 53/328 (16%)

Query: 302 VGSGKTLVAL-------IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L       I+  A  +   + +I+ P   LAQQ Y  ++    NTQ     
Sbjct: 47  TGSGKTLAFLLPAMQRVISSKALSKKDPRVLILLPTRELAQQVYAQLRLLVANTQYRAIS 106

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---F 406
           + G      + KAL R    + H I+ T     D +Q   L L     +++DE  R    
Sbjct: 107 VLGGENFNDQAKALAR----EPHFIVATPGRIADHLQQRHLFLNGLELLVLDEADRMLDL 162

Query: 407 GVQQRLKLTQKATAPH----VLLMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           G   +LK    A A H     L+ +AT        L    L + +   I     G   I+
Sbjct: 163 GFAPQLKAI-NAAADHRRRQTLMFSATLEHGEVHELAAELLKEPEHVAIDAVHLGHGDIE 221

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV---------ERFNSL 510
             I+  + ++     L+ +LS                 +NFR V+         ER  +L
Sbjct: 222 QQILLADHLEHKEALLERLLSG----------------NNFRQVMIFTATRQDTERLATL 265

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + A + G +    +  +MDSF     ++L+ T V   G+D+ + S+++  +   
Sbjct: 266 LAEKGYNTAALSGELRQAQRNQIMDSFSREHHRILVTTDVASRGLDISNVSLVVNFDMPK 325

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP 598
           F    +H++ GR GR     + I L  P
Sbjct: 326 FAEEYVHRI-GRTGRAGNKGTAISLVGP 352


>gi|332637856|ref|ZP_08416719.1| ATP-dependent DNA helicase RecQ [Weissella cibaria KACC 11862]
          Length = 480

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 141/340 (41%), Gaps = 49/340 (14%)

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           ++L+ ++     L +L    G GK+L+  + M    E  G  VI+ P+  L Q     + 
Sbjct: 25  EVLEALTAGKNTLAMLP--TGGGKSLIYQM-MGNLRE--GLVVIVTPLLSLMQDQVARLN 79

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII---IGTHALFQDSIQYYKLILVI 399
            Y   ++++   +   +PQ  RR  L  +   +   +   +    + Q +++  K+ L++
Sbjct: 80  -YAGESKVVA--LNSTLPQDARRTILRGLNQYKFLFVSPEMLGQTVVQSALRKVKINLLV 136

Query: 400 VDEQH---RFGVQQRL------KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           VDE H    +G   R       ++ QK   P +LL+TAT  P+ +          S IT 
Sbjct: 137 VDEAHTIVSWGPDFRPDYLALPQVHQKLGQPQLLLLTATATPQMM----------SNIT- 185

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVL------SEGKKAYWICPQIEEKKE------S 498
            P G  P    I       + ++R  + L      +EG+K   +   + + KE      S
Sbjct: 186 SPFGLVPEDWFIY-----RQSVDRPNIYLHTEQLDNEGRKRERLAELVRQLKEPGIVYFS 240

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           + +        L E     +A  H  +  + +  +   F  G   ++ AT+   +GID  
Sbjct: 241 SRKLATSMAEWLRETTGQRVAAYHAGLDTMSRYRIQQQFMMGQIDVITATSAFGMGIDKD 300

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           D   +I  +  +  LA   Q  GR GR  E S+ +LLY P
Sbjct: 301 DVRYVIHYHLSN-DLANYLQEIGRAGRDGEQSAAVLLYVP 339


>gi|316971006|gb|EFV54849.1| eukaryotic initiation factor 4A [Trichinella spiralis]
          Length = 465

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 123/312 (39%), Gaps = 36/312 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I +   +       QA++MAP   LAQQ  + I     +  + V 
Sbjct: 126 IAQAQSGTGKTATFAIGLLQQINTDFNDCQALVMAPTRELAQQIQKVILALGDHMGVKVL 185

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G    A  R   E++  G  H+ +GT     D I+ + L        +L   DE   
Sbjct: 186 TCIGGTSVATNR---EKLGQG-CHVAVGTPGRVLDMIRGHHLQTKGIKTFVLDEADEMLS 241

Query: 406 FGVQQRLKLT---QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA-GRKPIKTV 461
            G +Q++        A    VLL    P     V T   +  +  +  K       I+  
Sbjct: 242 RGFKQQIHEVFEFMPADVQVVLLSATMPDEVLQVTTKFMNNPVRILVRKEELTLDGIRQF 301

Query: 462 IIPINRIDEVIERLKVVLS--EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            I + R +  ++ L  + +     KA   C         N R  VE+          ++ 
Sbjct: 302 YIEVGREEWKLDTLCDIYTTLSISKAVIFC---------NSRQKVEKLARELTDRKFTVT 352

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG M+  D++ +M  F+ G+ ++LI+T ++  GID+   SI+I  +  H     +H+ 
Sbjct: 353 CMHGDMTQQDRDVIMQQFRTGSSRVLISTDLLARGIDIQQVSIVINYDIPHNRENYIHRY 412

Query: 580 R------GRVGR 585
                  GR GR
Sbjct: 413 EQPAVFIGRSGR 424


>gi|167755660|ref|ZP_02427787.1| hypothetical protein CLORAM_01175 [Clostridium ramosum DSM 1402]
 gi|167704599|gb|EDS19178.1| hypothetical protein CLORAM_01175 [Clostridium ramosum DSM 1402]
          Length = 456

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 135/320 (42%), Gaps = 46/320 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITG 357
            G+GKT   L+ +   ++      QAVI AP   LA Q Y   K +T+ N++I V +I G
Sbjct: 48  TGTGKTHAFLLPVMDRIDPKNNSVQAVITAPTRELATQIYNNAKLFTKYNSEIKVSLIVG 107

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQD------SIQYYKLILVIVDEQH---RFGV 408
                 R+K + ++A  Q H++IGT    +D      +++       IVDE      FG 
Sbjct: 108 G---NDRQKTVNKLAV-QPHVVIGTPGRIKDLSLDEQALKITTASTFIVDEADMTLEFGY 163

Query: 409 QQRLKLTQKATAPHVLLMT-ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT-VIIPIN 466
            + +          + +M  +  IP+ L               +P  +K +K+ V++ I+
Sbjct: 164 LEDIDAVAGKMRDDLRMMVFSATIPQML---------------RPFLKKYMKSPVLVEID 208

Query: 467 RIDEVIERLKVVL--SEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSS 517
                 E ++ +L  ++ K  Y +  +I E  +       +N RS V             
Sbjct: 209 DDKVTTENVEHILIATKHKNRYEVLKKIIESIDPYVCIIFANTRSDVASTTKKLREDGFK 268

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +  IHG +   +++ +M   +N   + ++AT +   GID+   S +I  N E       +
Sbjct: 269 VGEIHGDLEPRERKQMMRRIQNNEYQFIVATDIAARGIDIDGVSHVI--NMEFPKEPDFY 326

Query: 578 QLR-GRVGRGEEISSCILLY 596
             R GR GRG     C  +Y
Sbjct: 327 IHRSGRCGRGNYTGICYSMY 346


>gi|123464703|ref|XP_001317120.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121899846|gb|EAY04897.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 774

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 150/364 (41%), Gaps = 69/364 (18%)

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM--APIGILAQQHYE-FIKKYTQ 346
           QKN    I+      GKTL+A +A A A+E    A I+   P   LA + Y  F  ++  
Sbjct: 71  QKNA---IVLAPTAGGKTLIAEVAFAQALERNPSAKILYCVPFVALATEKYNLFTLRFPS 127

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
            T        G  P   R  ++    + +AH +I + A  +     + L L+++DE H  
Sbjct: 128 VTVRAYYHDIGAGPLTQR--SIGVCTYERAHSLINSSASGK-----FDLDLIVIDEFHML 180

Query: 407 GVQQRLKLTQK--------ATAPHVLLMTATPIPRTLVLTS--LGDIDI-SKITEKPAGR 455
               R    +          + P ++ +TAT  P   V  S  LG     ++I E P+ +
Sbjct: 181 DDNDRGANLESLIVLSMLLPSHPRIIGLTATLTPDDAVKLSIWLGGFSFKAEINESPSRQ 240

Query: 456 K-----------PI-KTVIIPINR---------IDEVI-------------------ERL 475
           +           P+ K  I P  R         I  +I                   E  
Sbjct: 241 QFYICRPNGELCPVRKGYICPAFRTLKKDDKFYISSIIAPFMKMNSKNVLIFAQTRKESE 300

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           ++ LS  +    I  + +E  ++  + ++E+ +       + IA  H  ++  ++  + D
Sbjct: 301 EIALSLAQMLGNINKE-DENIQTERKKLLEKLDESFSCVMNGIAFHHAGLTQEERSLIED 359

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL----AQLHQLRGRVGRGEEISS 591
           +F+NG  K+++AT+ +  G+D  + S+++I +A    L    ++  Q+ GR GR E  S 
Sbjct: 360 AFRNGIIKIIVATSTLSAGVDFQNISVVVILSAFKSNLQISPSKFMQMCGRAGRNERSSG 419

Query: 592 CILL 595
            +++
Sbjct: 420 TVVV 423


>gi|171914601|ref|ZP_02930071.1| primosome assembly protein PriA [Verrucomicrobium spinosum DSM
           4136]
          Length = 778

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 101/228 (44%), Gaps = 22/228 (9%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGKTLVALIAMAAAVEAG 321
           ++ L + P + T+ Q      +L+ + Q +    IL  G  GSGKT V L A+   +E  
Sbjct: 228 EEFLPSAPLTLTEEQAVVFAGVLKALEQPSEARPILLHGVTGSGKTEVYLQAIGRVLEKN 287

Query: 322 GQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             A+++ P I +  Q    F  ++ +  Q I  ++  ++    R     +I  G+A I+I
Sbjct: 288 KTALVLVPEISLTPQTIERFKCRFAERKQRIA-VLHSHLSDGERHDEWFKIHEGRADIVI 346

Query: 381 GTHALFQDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP 430
           G  +     ++   L ++IVDE+H          R+  +    +  K     VLL +ATP
Sbjct: 347 GARSAIFAPLE--NLGIIIVDEEHEPSYKQEEAPRYNARDLAVVRGKMEGCVVLLGSATP 404

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI-DEVIERLKV 477
              T      G  D+  +T +  G++      +P+ RI D  +E+ K 
Sbjct: 405 CLETFENARNGKYDLLGMTRRTDGKE------LPLIRIVDMRLEKRKT 446


>gi|163792315|ref|ZP_02186292.1| Primosomal protein N' (replication factor Y) - superfamily II
           helicase [alpha proteobacterium BAL199]
 gi|159182020|gb|EDP66529.1| Primosomal protein N' (replication factor Y) - superfamily II
           helicase [alpha proteobacterium BAL199]
          Length = 733

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 7/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  QE A   + + ++     +  L G  GSGKT V   A+A A+ AG QA+++ P   L
Sbjct: 202 TGEQEIAADALRRAVTAGAFSVAALDGVTGSGKTEVYFEAIATALTAGRQALVLLPEIAL 261

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
           + Q   +++++     +   +   ++    RR+    +A G A +++G   ALF   + +
Sbjct: 262 SAQ---WLERFEARFGVQPAVWHSDLKPKVRRETWRAVAEGTARVLVGARSALF---LPF 315

Query: 393 YKLILVIVDEQHRFGVQQ 410
           ++L L++VDE+H    +Q
Sbjct: 316 HELGLIVVDEEHEPAYKQ 333


>gi|148706200|gb|EDL38147.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Mus musculus]
          Length = 639

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 171/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           ++ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 110 RSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIENFSD 164

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-- 312
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+  
Sbjct: 165 IEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 218

Query: 313 -----------AMAAAVEAG--GQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
                      A+ A  E G  G+      ++++AP   LA Q YE  +K++  +++   
Sbjct: 219 LSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 278

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 279 VVYGGADTVQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 334

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 335 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 393

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  +D+    L ++ + GK +  +   +E KK ++    +E F     +  +
Sbjct: 394 NITQKVVWVEELDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLENFLFQERYACT 449

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           SI   HG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 450 SI---HGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVI 494


>gi|148559195|ref|YP_001258911.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|148370452|gb|ABQ60431.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
          Length = 482

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 147/347 (42%), Gaps = 61/347 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+    +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE----RKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  + ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGIDHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +  KL+L     +++DE  R        +      P +  +    P  R TL  +
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADR--------MLDMGFIPDIERICKLIPFTRQTLFFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDE-VIERL---------------KVVLSEG 482
           +    +I+K+TE+     P++  +   +   + V +RL                ++ SEG
Sbjct: 186 ATMPPEITKLTEQFL-HSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEG 244

Query: 483 ---KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
              K A   C        +  + V E F SL  H   + A+ HG M    + +++ SFK+
Sbjct: 245 DSLKNAIIFC--------NRKKDVSELFRSLTRHEFDAGAL-HGDMDQRARMAMLSSFKD 295

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           G  +LL+A+ V   G+D+ D S +   +        +H++ GR GR 
Sbjct: 296 GKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRA 341


>gi|315633568|ref|ZP_07888858.1| primosome assembly protein PriA [Aggregatibacter segnis ATCC 33393]
 gi|315477610|gb|EFU68352.1| primosome assembly protein PriA [Aggregatibacter segnis ATCC 33393]
          Length = 709

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 26/207 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +  G Q +++ P IG+  Q    F  ++     ++++++
Sbjct: 198 LLDGVTGSGKTEIYLQFIEEILNQGKQVLVLVPEIGLTPQTVSRFQARFN----VVIDVL 253

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
             N+    R    +R   GQ+ +IIGT  ALF    Q+  L  +I+DE+H          
Sbjct: 254 HSNLNDTQRLHVWQRARSGQSAVIIGTRSALF---TQFADLGAIIIDEEHDASFKQQDGW 310

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           R+  +    +  K     VL+ +ATP   +L     G      ++EK      ++  +I 
Sbjct: 311 RYHARDLAVVYAKQLNIPVLMGSATPCLESLNNVQQGKYQRLCLSEKANQSTALQQHVID 370

Query: 465 I------NRIDEV-IERLKVVLSEGKK 484
           +      N + E+ I+R++V L +G +
Sbjct: 371 LKHQSMRNGLSEILIKRMQVHLEKGNQ 397


>gi|315150902|gb|EFT94918.1| primosomal protein [Enterococcus faecalis TX0012]
          Length = 810

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 379 ARSALFAPIE--NIGVIIIDEEHEASYKQ 405


>gi|257869404|ref|ZP_05649057.1| DEAD-box ATP dependent DNA helicase [Enterococcus gallinarum EG2]
 gi|257803568|gb|EEV32390.1| DEAD-box ATP dependent DNA helicase [Enterococcus gallinarum EG2]
          Length = 448

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 149/349 (42%), Gaps = 45/349 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           SPT+ QE  I  I     QK R + + Q   GSGKT   L+ +   ++      Q VI A
Sbjct: 23  SPTEVQEKLIPVI-----QKGRSV-VGQSQTGSGKTHTFLLPLMDQIDPQKDEVQVVITA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q Y+  K+  +  Q  + + T  +    +++ ++R+ + Q  ++IGT     D
Sbjct: 77  PSRELATQIYQAAKQLAEFQQPEIRV-TNFVGGTDKQRQMDRLQNQQPQLVIGTPGRILD 135

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            I    L +       R  V     +T        +   A+ +P  L +         K+
Sbjct: 136 MINEQALAV----HTARAFVIDEADMTLDMGFLEEVDQIASRLPEKLQMLVFSATIPEKL 191

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----------- 497
             +P  +K ++  +I     +E+  R K V+SE  + + I  + ++K +           
Sbjct: 192 --RPFLKKYLENPLI-----EEI--RPKAVISESIENWLISTKGKDKNQLVYQLLTTGHP 242

Query: 498 ------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                 +N +S V+      +     +A IHG ++  +++ VM   +N   + ++AT + 
Sbjct: 243 YLAIVFANTKSRVDELTDYLKEKGLKVAKIHGDITPRERKRVMRQVQNLEYQYVVATDLA 302

Query: 552 EVGIDVVDASIIIIENAEHFGLAQ--LHQLRGRVGRGEEISSCILLYHP 598
             GID+   S +I  NAE        +H++ GR GR +   + I LY P
Sbjct: 303 ARGIDIEGVSHVI--NAEIPADLDFFIHRV-GRTGRNQLAGTAITLYDP 348


>gi|297579966|ref|ZP_06941893.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
 gi|297535612|gb|EFH74446.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
          Length = 437

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 118/277 (42%), Gaps = 23/277 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E + +      +    + G
Sbjct: 66  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCG 125

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALF---QDSIQYYKLILVIVDEQHRFGVQQRLKL 414
            + +A ++ AL   A     ++  T  LF   Q  +   ++  +++DE  R        L
Sbjct: 126 GVDKAEQQNAL---AENPTILVATTGRLFDLTQSGLSLNRVTTLVLDEADR--------L 174

Query: 415 TQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                 P V  L   T   R  V+ S    D  K+  +   R P +    P N I++ ++
Sbjct: 175 LDMGFWPQVQALAIQTASVRQTVMCSATFSDELKLKAQQLMRAPTQVSANPENSINQAVQ 234

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSD 527
               ++++G K   +   +++ +      F    E  +SL +    +      +HG  S 
Sbjct: 235 ETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQ 294

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            ++E+ +  FKNG+ ++LIAT ++  GI +    ++I
Sbjct: 295 SEREAALAEFKNGSTQVLIATDLLARGIHIEQLPVVI 331


>gi|315178880|gb|ADT85794.1| primosome assembly protein PriA [Vibrio furnissii NCTC 11218]
          Length = 733

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 89/204 (43%), Gaps = 18/204 (8%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    SQ+     +L G  GSGKT V L  +   +EAG QA+++ P IG
Sbjct: 198 PKLNQEQAIA-IASVNSQRGFGCYLLHGVTGSGKTEVYLNLIKPVLEAGKQALVLVPEIG 256

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q    F K++T    + VE+I   +    R  A        A I+IGT +       
Sbjct: 257 LTPQTINRFRKRFT----VPVEVIHSGLNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 310

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           +  L ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 311 FADLGIIIVDEEHDASYKQQDSLRYHARDVAVMRANLEQVPIVLGSATPALETLHNALTG 370

Query: 442 DIDISKITEKPAGRKPIKTVIIPI 465
                ++T++     P    ++ +
Sbjct: 371 KYHHLQLTQRAGTALPTTNRVLDV 394


>gi|315038238|ref|YP_004031806.1| ATP-dependent DNA helicase RecQ [Lactobacillus amylovorus GRL 1112]
 gi|312276371|gb|ADQ59011.1| ATP-dependent DNA helicase RecQ [Lactobacillus amylovorus GRL 1112]
          Length = 588

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/326 (21%), Positives = 127/326 (38%), Gaps = 59/326 (18%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK+L   +    A+   G  ++++P+  L +   + +K+      I    +    PQ
Sbjct: 39  TGAGKSLCYQVP---ALMNAGVTLVISPLISLMKDQIDTLKQ----NGINAAALNSATPQ 91

Query: 362 AHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQH---------RFG 407
                 L +   G+  +I  T        F+  + +  + LV VDE H         R  
Sbjct: 92  EEVNPILRQAYEGKIKLIYITPERLAIDYFRYQLNFLDIDLVAVDEAHCISQWGHDFRPA 151

Query: 408 VQQRLK-LTQKATAPHVLLMTATPIP--------------RTLVLTSLGDIDISKITEKP 452
            +Q L  +    + P++L +TAT  P              + +++TS    ++S      
Sbjct: 152 YRQLLDGINSLKSRPNILALTATATPAVQDDICEQLNIPKQNMIITSFARPNLS------ 205

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
                 K V  P N    + + +K+   E    Y           +N R  VE       
Sbjct: 206 -----FKVVNSPQNTPLYIAQYIKMHPDEAGIIY-----------TNTRKKVESLTDYLA 249

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               S+   HG M   +++ V ++F+    ++++AT    +GID  +   +I  ++    
Sbjct: 250 KKGISVGAYHGGMETKERDEVQEAFQFDQVQVIVATNAFGMGIDKSNVRFVIHASSAR-N 308

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
           +   +Q  GR GR  E S  I++YHP
Sbjct: 309 IESYYQEAGRAGRDGEESEAIMIYHP 334


>gi|261492311|ref|ZP_05988873.1| primosomal replication factor n prime [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496098|ref|ZP_05992506.1| primosomal replication factor n prime [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261308200|gb|EEY09495.1| primosomal replication factor n prime [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311994|gb|EEY13135.1| primosomal replication factor n prime [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 732

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 94/425 (22%), Positives = 168/425 (39%), Gaps = 111/425 (26%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++   Q +++ P IG+  Q     ++++     + ++++
Sbjct: 218 LLNGVTGSGKTEVYLQLIETVLKREEQVLLLVPEIGLTPQT----VQRFKARFNVEIDVL 273

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
             NM +  R  A  R  +G++ I+IGT  ALF    Q+ KL ++I+DE+H    +Q+   
Sbjct: 274 HSNMNETERLNAWLRAKNGESAIVIGTRSALF---TQFQKLGVIILDEEHDSSFKQQDGW 330

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE----KPAGRK--- 456
                   +   + A  P ++L +ATP      L SL ++   K  E      AG     
Sbjct: 331 RYHARDLAVVRAKNANIP-IVLGSATP-----SLESLHNVQNGKFIELTLTARAGNAQLA 384

Query: 457 -----PIKTVIIPINRIDEVIERLKVVLSEGKKAY------------------WIC---- 489
                 +KT  +     + ++  +K  L +G +                    W+C    
Sbjct: 385 NQQIIDLKTQRVTAGLSERLLSMMKTQLEQGNQVMLFLNRRGFAPVLLCHECGWVCECEA 444

Query: 490 ---PQIEEKKESNFR---SVVERFNSLHEHFTSSIAII------------------HGRM 525
              P    +K+   R      +R          S  +I                  H ++
Sbjct: 445 CNKPFTYHQKQKVLRCHHCATQRVIPRQCGHCGSTHLITTGVGTEQLEQVLNQQFPHYQV 504

Query: 526 SDIDKESV---------MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF----- 571
           + ID++S          + + + G  ++LI T ++  G    + +++ I N +       
Sbjct: 505 TRIDRDSTARKGALENHLTAIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTD 564

Query: 572 -----GLAQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF-LIAEED 624
                 LAQL+ Q+ GR GR E+    +L  H P     +  L  L   E G+   A+E 
Sbjct: 565 FRAEEKLAQLYIQVAGRAGRAEKKGEVVLQTHYP----DHPLLKTL--LEQGYRAFADEA 618

Query: 625 LKQRK 629
           LK R+
Sbjct: 619 LKMRQ 623


>gi|288930719|ref|YP_003434779.1| DEAD/DEAH box helicase [Ferroglobus placidus DSM 10642]
 gi|288892967|gb|ADC64504.1| DEAD/DEAH box helicase domain protein [Ferroglobus placidus DSM
           10642]
          Length = 764

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 150/362 (41%), Gaps = 53/362 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G GKT    I +  +++ G +A+I  P   LA   YE I  Y+           G+   
Sbjct: 112 TGFGKTEAFTIPILESLKKGEKALIFYPTKALASDQYEKISYYSSFFGFNAVKFDGDSGY 171

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYY------------KLILVIVDEQHRF--- 406
           + RR+ L     G+A +I+       D + Y+            K+  ++ DE H +   
Sbjct: 172 SERREVL----SGRADLILTN----PDMVDYHLRNTPAFRRVAEKVRFLVFDELHSYSGL 223

Query: 407 ---GVQQRLKLTQKATAPHVLLMTAT-PIPRTLVLTSLGDIDISKITE--KPAGRKPIKT 460
               V   +K  ++ +   V+  TAT   P+       G     K  E  K +GRK    
Sbjct: 224 LGSNVAWLVKRLERFSDFRVIASTATIANPKEFAEYVFG-----KKFEVVKSSGRKGTLH 278

Query: 461 VIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            I+    +    V + +K +L  GKK             +N    VE    +       +
Sbjct: 279 FIMRYTPSFYGAVKDCVKSLL--GKKTLVF---------ANSYKAVETIAWILNR-EGIV 326

Query: 519 AIIH-GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           A +H G M+  ++  V   FK G  K+++AT+ +E+GID+ D  +++   +E     Q  
Sbjct: 327 ARVHKGGMTKKERRRVEKEFKEGRVKIVVATSTLELGIDIGDVEVVV---SELVPFPQFL 383

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG-FLIAEEDLKQRKEGEILGI 636
           Q  GR GR  + S  +L+     S  +Y R +  +  +D  F  AE+D ++ K+  IL +
Sbjct: 384 QRCGRAGRKGQESVGVLILREDDSIANYYRNNPEEYFKDEMFCYAEKDNEELKKYHILSM 443

Query: 637 KQ 638
            +
Sbjct: 444 AK 445


>gi|145601979|ref|XP_001403327.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|152013478|sp|A4QSS5|DBP2_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP2
 gi|145010431|gb|EDJ95087.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 548

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 143/343 (41%), Gaps = 49/343 (14%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +I+AP   LA Q    I K+ ++++I  
Sbjct: 170 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRN 229

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P+  + + L R       + I T     D ++  K  L     +++DE  R  
Sbjct: 230 TCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRML 285

Query: 407 --GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
             G +             R  L   AT P  +   A    +  +  ++G +D+S   +IT
Sbjct: 286 DMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRIT 345

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +       I  V+    + D +I  ++ V+        I   +  K+ ++    + RF  
Sbjct: 346 Q-------IVEVVSESEKRDRMIRHMEKVMDGKDSKNKILIFVGTKRVAD---EITRF-- 393

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +    +++I HG     +++ V+D FK G   +++AT V   GIDV + + ++  +  
Sbjct: 394 LRQDGWPALSI-HGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYP 452

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     +H++ GR GR     + I  +    SK +   L VL+
Sbjct: 453 NNSEDYIHRI-GRTGRAGAKGTAITFFTTENSKQARDLLGVLQ 494


>gi|153824721|ref|ZP_01977388.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-2]
 gi|149741677|gb|EDM55706.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-2]
          Length = 406

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 117/278 (42%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  + +        +    + G
Sbjct: 44  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSDVLTHVGTPLGLNTLCLCG 103

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +A ++ AL        +I++ T      L Q  +   ++  +++DE  R        
Sbjct: 104 GVDKAEQQNALAE----NPNILVATTGRLFDLTQSGLSLNRVTTLVLDEADR-------- 151

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 152 LLDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAV 211

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +      +HG  S
Sbjct: 212 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKS 271

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +E+ +  FKNGT ++LIAT ++  GI +    ++I
Sbjct: 272 QTQREAALAEFKNGTTQVLIATDLLARGIHIEQLPVVI 309


>gi|322711331|gb|EFZ02905.1| ATP-dependent RNA helicase dbp-2 [Metarhizium anisopliae ARSEF 23]
          Length = 545

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 143/344 (41%), Gaps = 51/344 (14%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +     + A        G   +++AP   LA Q  + I K+ ++++I 
Sbjct: 180 AETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGRSSRIR 239

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF 406
              + G +P+  + + L R       + I T     D ++  K  L     +++DE  R 
Sbjct: 240 NTCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRM 295

Query: 407 ---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KI 448
              G +             R  L   AT P  +   A       +  ++G +D+S   +I
Sbjct: 296 LDMGFEPQIRKIIEQIRPDRQTLMYSATWPKEVRAMAADFQTDFIQVNIGSMDLSANHRI 355

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           T+       I  V+  + + D +I+ L+ V+   +    I    +   +      + RF 
Sbjct: 356 TQ-------IVEVVSDMEKRDRMIKHLEQVMENKENKILIFVGTKRVADD-----ITRF- 402

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L +    +++I HG     +++ V+D FK G   +++AT V   GIDV + + ++  + 
Sbjct: 403 -LRQDGWPALSI-HGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDY 460

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR GR     + I  +     K +   ++VL+
Sbjct: 461 PNNSEDYIHRI-GRTGRAGAKGTAITFFTTDNQKQARELVNVLQ 503


>gi|85703566|ref|ZP_01034670.1| primosomal protein N' [Roseovarius sp. 217]
 gi|85672494|gb|EAQ27351.1| primosomal protein N' [Roseovarius sp. 217]
          Length = 733

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 25/166 (15%)

Query: 257 VEGKIAQKIL------RNIPFS------PTKS----QESAIKDILQDMSQKNRMLRILQG 300
           V+G +AQ  +      R+ PF+      P K+    Q +A + +   +  +     +L+G
Sbjct: 167 VKGLVAQGAVLEEDTPRDTPFARLDPDLPAKALTEDQATAARSLCAGLRGQGYGTTLLRG 226

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
             GSGKT V L A+A A+  GGQA+++ P I + A    EF+ +               +
Sbjct: 227 VTGSGKTEVYLEAVAEALRQGGQALVLLPEIALTA----EFLTRVEARFGARPAEWHSGV 282

Query: 360 PQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH 404
               RR+  + +  G A +++G   ALF   + +  L L++VDE+H
Sbjct: 283 TMTERRRVWKMVGQGGAQMVVGARSALF---LPFQNLRLIVVDEEH 325


>gi|289168235|ref|YP_003446504.1| ATP-dependent RNA helicase [Streptococcus mitis B6]
 gi|288907802|emb|CBJ22642.1| ATP-dependent RNA helicase [Streptococcus mitis B6]
          Length = 447

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 136/315 (43%), Gaps = 31/315 (9%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT-- 356
            GSGKT   L+ +   ++      QAVI AP   LA Q Y+  ++   ++++ V ++   
Sbjct: 47  TGSGKTHTFLLPIFQQLDETSDSVQAVITAPSRELATQIYQAARQIAAHSEVEVRVVNYV 106

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQR 411
           G   +A   + ++++A  Q HI+IGT     D ++      +K    +VDE         
Sbjct: 107 GGTDKA---RQIDKLASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGF 163

Query: 412 LKLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           L+   K           ++ +AT IP+ L         + K    P   K IKT  +  +
Sbjct: 164 LETVDKIAGSLPKDLQFMVFSAT-IPQKLQPF------LKKYLSNPVMEK-IKTKTVISD 215

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHG 523
            ID  +   K    +  + Y +   ++      F +   R + LH + T+    +A IHG
Sbjct: 216 TIDNWLISTKG-RDKNAQIYQLTQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHG 274

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            ++  +++ +M+  KN   + ++AT +   GID+   S +I +         +H++ GR 
Sbjct: 275 DIAPRERKRIMNQVKNLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRT 333

Query: 584 GRGEEISSCILLYHP 598
           GR       I LY P
Sbjct: 334 GRNGLPGIAITLYQP 348


>gi|220923247|ref|YP_002498549.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219947854|gb|ACL58246.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 465

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 144/348 (41%), Gaps = 46/348 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI  +L     +  +L + Q   G+GKT    + M   +E G       + +
Sbjct: 23  TPTPIQAQAIPHVLA----RRDVLGVAQ--TGTGKTAAFTLPMLTRLEQGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  ++Y  N ++ V ++ G +  A +   + R       ++I T   
Sbjct: 77  ILEPTRELAAQVEENFERYGTNHKLNVALLIGGVSFADQDAKITR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +  KL+L     +++DE  R        +      P +  ++   P  R TL  +
Sbjct: 133 LLDHFERGKLLLTGVELLVIDEADR--------MLDMGFIPDIERIVKLVPFTRQTLFFS 184

Query: 439 SLGDIDISKITEKPAGRKPIK-TVIIPINRIDEVIERLKVVLSEG----KKAYWICPQIE 493
           +    +I ++ +      P++  V  P +    + +RL     EG    K    +    E
Sbjct: 185 ATMPPEIQRLADDFL-HNPVRIEVARPASTASTIEQRLVATGGEGHQKRKTLRRLIRGAE 243

Query: 494 EKKE-----SNFRSVVERFNSLHEH-FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           E K      +  R V +   SL  H FT  +A +HG M    + + +D+F++G   LL+A
Sbjct: 244 ELKNGIIFCNRKRDVAQLQKSLANHGFT--VAALHGDMDQRARMAALDAFRSGEIPLLVA 301

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           + V   G+D+   S +   +  H     +H++ GR GR     S   L
Sbjct: 302 SDVAARGLDIPAVSHVFNFDVPHHAEDYVHRI-GRTGRAGRNGSAFTL 348


>gi|168038086|ref|XP_001771533.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677260|gb|EDQ63733.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 684

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 134/313 (42%), Gaps = 50/313 (15%)

Query: 302 VGSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI     +E        G   +++AP   LA Q  +   K+ ++++I    
Sbjct: 196 TGSGKTLGYLIPAFLHLERHRNNSRLGPTVLVLAPTRELATQIQDECVKFGRSSRITSTC 255

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---- 405
           + G  P+  + + +ER     A I+I T     D ++  ++ L     +++DE  R    
Sbjct: 256 VYGGAPKVPQLRDIER----GADIVIATPGRLNDFLEVKRVSLRQVSYLVLDEADRMLDM 311

Query: 406 -FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI------TEKPAGRKPI 458
            F  Q R  + +  +    L+ TAT  P+  V    GD+ I+ +      T++ A  K I
Sbjct: 312 GFEPQIRKIVNEIPSRRQTLMYTAT-WPKE-VRKIAGDLLINPVQVNIGNTDELAANKSI 369

Query: 459 KT---VIIPINRIDEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
                V++P     E   RL+ +L     G K    C        S  R       +L  
Sbjct: 370 TQNVEVVVPY----EKQRRLEQILRSQEPGSKIIIFC--------STKRMCDTLSRNLGR 417

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
            F +  A IHG  S  +++ V+  F+ G   +L+AT V   G+D+ D  +++  +     
Sbjct: 418 DFGA--AAIHGDKSQSERDFVLSQFRTGRTPILVATDVAARGLDIKDIRVVVNYDFPTGV 475

Query: 573 LAQLHQLRGRVGR 585
              +H++ GR GR
Sbjct: 476 EDYVHRI-GRTGR 487


>gi|154151964|ref|YP_001405582.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Methanoregula boonei 6A8]
 gi|154000516|gb|ABS56939.1| DEAD/DEAH box helicase domain protein [Methanoregula boonei 6A8]
          Length = 698

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 133/328 (40%), Gaps = 58/328 (17%)

Query: 304 SGKTLVALIAMAAAV----EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GK+  ALI +   +      G   + +AP+  L     E I  + +   + +    G++
Sbjct: 31  GGKSEAALIPVLDDILKTGAPGISCLYIAPLKALINDQEERIAGFCRPVSLTLARWHGDV 90

Query: 360 PQAHRR--------------KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           P+  R               ++LE + H      +   AL   S++Y     VIVDE H 
Sbjct: 91  PKGDRGWKEDDAPQFLLITPESLEVLLHEP----VAASAL--SSVRY-----VIVDELHA 139

Query: 406 F-----GVQQRL---KLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITE--KPA 453
           F     GV  R+   +L + ATAP   + L      P  ++    G    SK+     P 
Sbjct: 140 FVESERGVHLRVLLDRLDRIATAPVRRIGLSATVGNPDEVLAWFSGGRGRSKVVSVAAPP 199

Query: 454 GRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            +K  + V+   P  RID ++      L  GKKA  +        E+  R V  R  +LH
Sbjct: 200 SQKVFRFVVESDPGKRIDALVR-----LVAGKKAL-VFVNSRSAAETVIREVSGRIENLH 253

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            H        H  ++ I K+   ++F+      +I T+ +E+GID+ D   I++++    
Sbjct: 254 IH--------HSSIAPIKKKEAEEAFRGSGGACIICTSTLELGIDIGDLD-IVVQDGPPD 304

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPP 599
            ++   Q  GR GR +  +S   +   P
Sbjct: 305 SVSSFLQRMGRAGRRDRAASVAWILSDP 332


>gi|27262418|gb|AAN87490.1| primosomal protein N' [Heliobacillus mobilis]
          Length = 753

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 126/286 (44%), Gaps = 53/286 (18%)

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFK----KEI----GIPINVEGKIAQKILRNIPFS 272
           TSP+ ERL    L AG + L+     F+    K++    G P  +E  + Q+        
Sbjct: 169 TSPSLERL----LEAGLVELVQRLPPFRFPEEKDVESSEGTPSMIEPALNQE-------- 216

Query: 273 PTKSQESAIKDILQDMSQKNRMLR--ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP- 329
               Q +A++ I+ D+ + +R  +  +L G  GSGKT + + A   A+  G Q + + P 
Sbjct: 217 ----QVAAVQAIIADLEKSHRDKKPFLLHGVTGSGKTEIYIQAAKKALAMGRQVLFLVPE 272

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I +  Q      +++  +    V ++   + +  RR    RI+ G+A ++IG  +     
Sbjct: 273 IALTPQMGRRLRERFGSD----VLLLHSGLTEKVRRSHWYRISRGEASLVIGPRSAVFAP 328

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKA------TAPH----VLLMTATPIPRTLVLTS 439
           +    L L+IVDE+H     Q   L   A       A H    V++ +ATP   T     
Sbjct: 329 VP--NLGLIIVDEEHEPSYHQENDLKYHAREVAIERARHCGALVIIGSATPAIETYDKAM 386

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
            G   I ++TE+  G +P+  V I    +D     ++  L+EG + 
Sbjct: 387 EGSYRILRLTERAQG-QPMPVVDI----VD-----MRAELTEGNRG 422


>gi|283779400|ref|YP_003370155.1| DEAD/DEAH box helicase domain-containing protein [Pirellula staleyi
           DSM 6068]
 gi|283437853|gb|ADB16295.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
          Length = 458

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 139/318 (43%), Gaps = 54/318 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAA--AVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQII 351
           + Q   G+GKT   +I +     +E G    QA+I+ P   LA Q  + + K ++  +I 
Sbjct: 53  VGQARTGTGKTASFVIPILELLDIERGAPTPQALILVPTRELAVQVRDEVVKLSEGLKIN 112

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
              + G  P    +  ++++  G  H+++GT     D     +I +  +  V++DE  R 
Sbjct: 113 CAAVYGGKPI---KSQVDKLKKG-CHVVVGTPGRVLDHIARGTIDFTHIECVVLDEADRM 168

Query: 407 -------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLT------------SLGDIDISK 447
                   +++ LK   +      LL++AT  P    L             S  D+ +  
Sbjct: 169 LDIGFRPDIERILKRCPRER--QTLLLSATVPPPIAKLAQRYMYEPEMLNFSPADVSVDT 226

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I +K           +  +R  +++ +L ++  E K+A   C + +   +  ++ + ++ 
Sbjct: 227 IEQK--------YFTVEHDRKFDLLMKL-LLREEPKQAIVFC-RTKRGTDKVYQKLTKKL 276

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            +         A IHG +S   ++ VM  F++G+ + L+AT VI  GIDV   S I+  +
Sbjct: 277 GN--------TAAIHGDLSQGQRDRVMAGFRDGSVRYLVATDVIGRGIDVSTVSHIVNFD 328

Query: 568 AEHFGLAQLHQLRGRVGR 585
              F    +H++ GR GR
Sbjct: 329 IPVFCDDYVHRV-GRTGR 345


>gi|121586999|ref|ZP_01676777.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           2740-80]
 gi|121548734|gb|EAX58781.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           2740-80]
          Length = 428

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 118/278 (42%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E +        +    + G
Sbjct: 66  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCG 125

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +  ++ AL        +I++ T      L Q  ++  ++  +++DE  R        
Sbjct: 126 GVDKTEQQNALAE----NPNILVATTGRLFDLTQSGLRLNRVTTLVLDEADR-------- 173

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 174 LLDMGFWPQVQALASQTAGVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAV 233

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSSIAI---IHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +  +   +HG  S
Sbjct: 234 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLKKAGVVATALHGDKS 293

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +E+ +  FKNGT ++LIAT ++  GI +    ++I
Sbjct: 294 QAQREAALAEFKNGTTQVLIATDLLARGIHIEQLPVVI 331


>gi|33151808|ref|NP_873161.1| primosome assembly protein PriA [Haemophilus ducreyi 35000HP]
 gi|33148029|gb|AAP95550.1| primosomal protein N' [Haemophilus ducreyi 35000HP]
          Length = 714

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 165/419 (39%), Gaps = 99/419 (23%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++   Q +++ P IG+  Q     + ++     + ++++
Sbjct: 200 LLNGITGSGKTEVYLQVIEQILKQDKQVLVLVPEIGLTPQ----MVNRFKTRFNVEIDVL 255

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
             N+ +  R K   +  +G++ I+IGT  ALF    Q+ +L L+I+DE+H    +Q+   
Sbjct: 256 HSNINETMRLKVWLKAKNGESAIVIGTRSALF---TQFQRLGLIIIDEEHDHSFKQQEGW 312

Query: 415 TQKATAPHVLLMTATPIP-----RTLVLTSLGDIDISKITE----KPAGRKPI------- 458
              A    +       IP      T  L S+ ++   K T+      AG   I       
Sbjct: 313 RYHARDVAIFRAKCLNIPIILGSATPSLESVYNVKNGKFTQLLLSTRAGNAEIAQQQLID 372

Query: 459 -KTVIIPINRIDEVIERLKVVLSEGKKAY------------------WIC-------PQI 492
            KT  I     D ++  ++  L +G +                    WIC       P  
Sbjct: 373 LKTQRITAGLSDRLLMLMQTHLQKGNQVMLFLNRRGFAPVLLCHECGWICECDACEKPYT 432

Query: 493 EEKKESNFR---SVVERFNSLHEHFTSSIAIIHG------------------RMSDIDKE 531
             +K+   R      +R       +  S  +I                    ++S ID++
Sbjct: 433 YHQKQRVLRCHHCASQRVIPRQCGYCGSTNLITTGIGTEQLEQLLSEYFPTYQISRIDRD 492

Query: 532 SV---------MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH--FG-------- 572
           S          +++ + G  ++LI T ++  G    + +++ + N +   F         
Sbjct: 493 STGRKGALEHHLNAIQTGKSQILIGTQMLAKGHHFPNVTLVALVNVDSALFSTDFRAEER 552

Query: 573 LAQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF-LIAEEDLKQRK 629
           LAQL+ Q+ GR GR E+    +L  H P     +  L  L   +DG+   AEE LK R+
Sbjct: 553 LAQLYLQVAGRAGRAEKTGEVVLQTHYP----DHPLLKCL--LKDGYNAFAEEALKMRQ 605


>gi|19112808|ref|NP_596016.1| ATP-dependent RNA helicase Dbp5 [Schizosaccharomyces pombe 972h-]
 gi|1175426|sp|Q09747|DBP5_SCHPO RecName: Full=ATP-dependent RNA helicase dbp5
 gi|984214|emb|CAA90819.1| ATP-dependent RNA helicase Dbp5 [Schizosaccharomyces pombe]
          Length = 503

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 158/377 (41%), Gaps = 75/377 (19%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+K QE A+  +L   S   R + I Q   G+GKT    + M + V+A     QA+ +AP
Sbjct: 137 PSKIQEKALPLLL---SNPPRNM-IGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAP 192

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA+Q  + + +  + T++     I  ++P+          A   A I+IGT     D
Sbjct: 193 SRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG---------AKIDAQIVIGTPGTVMD 243

Query: 389 SIQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            ++  +L      + ++DE      QQ L   Q     H+L     P    +VL S    
Sbjct: 244 LMKRRQLDARDIKVFVLDEADNMLDQQGLG-DQSMRIKHLL-----PRNTQIVLFSAT-- 295

Query: 444 DISKITEKPAGRKPIKTVIIP-INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
             S+  EK A R        P  N I    E L V   EG K  ++  Q EE K   +  
Sbjct: 296 -FSERVEKYAER------FAPNANEIRLKTEELSV---EGIKQLYMDCQSEEHK---YNV 342

Query: 503 VVERFN------------------SLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGT 541
           +VE +                    +    T+   ++A + G +    ++++MDSF+ GT
Sbjct: 343 LVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGT 402

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENA--EHFGLAQ----LHQLRGRVGRGEEISSCILL 595
            K+L+ T VI  GIDV   ++++  +   +  G       LH++ GR GR   +   I  
Sbjct: 403 SKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRI-GRTGRFGRVGVSINF 461

Query: 596 YHPPLSKNSYTRLSVLK 612
            H    K S+  ++ ++
Sbjct: 462 VH---DKKSWEEMNAIQ 475


>gi|313888530|ref|ZP_07822197.1| primosomal protein N' [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845559|gb|EFR32953.1| primosomal protein N' [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 779

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 20/172 (11%)

Query: 273 PTKSQESAIKD----ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           P ++ + A+ D     L+ + + + ++ +L G  GSGKT V L   +  +E GGQ +++ 
Sbjct: 244 PYRTNKLALNDEQQEALKSIQETDIVVSLLHGLTGSGKTEVYLNLTSKVIEDGGQVIVLV 303

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
           P   L  Q  E  K +  N    V II   +    R     ++ + Q  +++G   A+F 
Sbjct: 304 PEIGLTPQMIERFKSWFGNE---VAIIHSKLSAGERYDEYRKVLNDQVKVVVGVRSAVF- 359

Query: 388 DSIQYYKLILVIVDEQH--RFGVQQRLKLTQKATAPH-------VLLMTATP 430
             + +  L ++IVDE H   +     LK      A +       V+L +ATP
Sbjct: 360 --VPFKNLKMIIVDEAHDSSYDFHDNLKYDTIEVAINRIKDRGKVVLGSATP 409


>gi|310657448|ref|YP_003935169.1| ATP-dependent RNA helicase, dead/deah box family [Clostridium
           sticklandii DSM 519]
 gi|308824226|emb|CBH20264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           sticklandii]
          Length = 411

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 169/380 (44%), Gaps = 57/380 (15%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M+K F     I + +  ++++++L+    +PT+ Q  +I  IL+          I Q   
Sbjct: 1   MKKDF-----IELGITNELSERLLKLRIDTPTQVQVKSIPYILEGRDV------IAQAQT 49

Query: 303 GSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           G+GKTL  L+ +   ++      QA+I++P   LA Q        ++  Q ++ +   N+
Sbjct: 50  GTGKTLAFLLPILEKIDVDSEDTQALIISPTRELAIQ-------ISEEAQKLISVKGINI 102

Query: 360 PQAHRRKALERIAHGQAH---IIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQR 411
             A+  + +E+  +       +++GT     D     S+   KL ++++DE  +      
Sbjct: 103 LSAYGGQDVEKQLNKLKKNIPLVVGTPGRILDLIRRESLNLSKLKMLVLDEADQM---LH 159

Query: 412 LKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKP----IKTVIIPIN 466
           +    +  A    + + TP  +  +  ++  + ++ K+  K    +P    +K   + ++
Sbjct: 160 MGFLDEVDA----IFSYTPSEKQVMCFSATFNKEVKKLA-KTYMNEPHYVSVKGQNVTLD 214

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS---SI 518
            ID++I    V  ++ KK   +C  I+ ++   F ++V      R  +L+E  +    + 
Sbjct: 215 EIDQII----VHTTDRKKQEALCEMIDTQQP--FMAIVFCRTKRRVTALYEDLSQKGYNC 268

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG +S   +E VM  F+N   +LLIAT V   GIDV   + I   +        +H+
Sbjct: 269 DQLHGDLSQAKREKVMKDFRNAKIQLLIATDVAARGIDVDGITHIYNYDMVLDTDTYIHR 328

Query: 579 LRGRVGRGEEISSCILLYHP 598
           + GR GR  E  + +    P
Sbjct: 329 I-GRTGRAGEKGTAVTFVTP 347


>gi|254443756|ref|ZP_05057232.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
 gi|198258064|gb|EDY82372.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
          Length = 603

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 139/341 (40%), Gaps = 46/341 (13%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-V 352
           I Q   G+GKT    + L++M    E G +A+I+AP   LA Q  E I  Y +  + + V
Sbjct: 53  IGQAQTGTGKTAAFALPLLSMLDPNEDGPKAIILAPTRELALQVSEAISNYGRKVKRLEV 112

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQH 404
             I G      + +AL+R    +  I++GT     D I+   L        +L   DE  
Sbjct: 113 TAIYGGTDFTRQFRALDR----KPAIVVGTPGRIMDHIRRGSLDLSRISHVVLDEADEML 168

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT--SLGDIDISKITEKPAGRKPIKT 460
           R G  + ++  L    +     L +AT  PR   +    L +     I    A    ++ 
Sbjct: 169 RMGFIEDVEWILEHTPSERQTALFSATMPPRIAAIAKKQLKEPVTVAIKNTTATVSTVRQ 228

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--- 517
             I  N +   IE L  +L   ++   I           F       + + E   +S   
Sbjct: 229 RFIKCNGMRHKIEVLGNLLETEERDAAIV----------FTRTKSAASMIAEELAASGHA 278

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGL 573
           +  IHG ++   +E  +   K G   +L+AT V   G+DV   S +    I ++AE +  
Sbjct: 279 VEAIHGDITQNKREKAVSLLKEGKIDILVATDVAARGLDVDRISHVFNFDIPDDAEPY-- 336

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
             +H++ GR GR       ILL    L++  + +L  +++ 
Sbjct: 337 --IHRI-GRAGRAGRSGEAILL----LTRRDFRKLRDIEDA 370


>gi|328697425|ref|XP_003240334.1| PREDICTED: ATP-dependent RNA helicase p62-like isoform 2
           [Acyrthosiphon pisum]
          Length = 516

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 160/378 (42%), Gaps = 56/378 (14%)

Query: 265 ILRNIPFS---PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA- 320
           ++RN  F+   P ++Q   I      MS KN M+ + Q   GSGKTL   +     +   
Sbjct: 116 VIRNEGFTEPTPIQAQGWPIA-----MSGKN-MVGVAQ--TGSGKTLGYTLPAVVHINNQ 167

Query: 321 -------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                  G  A+++AP   LAQQ  +    + Q+T +    I G  P++H+ + L     
Sbjct: 168 EPLKKGDGPIALVLAPTRELAQQIQKVAGLFNQSTYLRSTCIYGGAPKSHQARDL----M 223

Query: 374 GQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQRL-KLTQKATAPHVL 424
               I+I T     D     +    +   +++DE  R    G + ++ K+ Q+      +
Sbjct: 224 NGVEIVIATPGRLLDFLESRATNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQV 283

Query: 425 LMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPIKTVII--PINRIDEVIERLK 476
           LM +   P+ +       L+    +++  +T   A    ++ V +     + D++++ L+
Sbjct: 284 LMWSATWPKEVQKLANDFLSDYIQLNVGSLTLS-ANHNILQNVDVCQEHEKEDKLMDLLQ 342

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI---IHGRMSDIDKESV 533
            + +           +EE K   F     + +++    T+  A    IHG  S  +++ V
Sbjct: 343 DIAN-----------MEENKTIIFAETKRKVDTITRKITNMGARAVGIHGDKSQSERDHV 391

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F+ G   +L+AT V   G+DV D   +I  +  +     +H++ GR GR  +  +  
Sbjct: 392 LKQFRGGRANILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRI-GRTGRSSQKGTSY 450

Query: 594 LLYHPPLSKNSYTRLSVL 611
             +    SK +   ++VL
Sbjct: 451 AFFTHSNSKQAKDLVAVL 468


>gi|145476289|ref|XP_001424167.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391230|emb|CAK56769.1| unnamed protein product [Paramecium tetraurelia]
          Length = 475

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 154/378 (40%), Gaps = 65/378 (17%)

Query: 257 VEGKIAQKILRNIPFSPTKSQES-AIKDILQDMS-QKNRMLRILQG-------DVGSGKT 307
           + GK+   I +N  F P   QE+   ++I    S Q+  M  I  G       + GSGKT
Sbjct: 95  IHGKVF-NIAQNFNFLPESLQETLKARNITSPSSIQQAIMPLIFDGHDVIAIAETGSGKT 153

Query: 308 LVALIA-----MAAAVEAGGQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIVEIITGNM 359
           L   +       A    AG + ++MAP   LAQQ    Y+   K           + G +
Sbjct: 154 LAYALPGIMHLQAQPPVAGPRILVMAPTRELAQQIQTQYDLFAKTC--------CLYGGI 205

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQ----YYKLILVIVDEQHR-----FGVQQ 410
           P+ H+  +L         +II T     D I+       +  V++DE  R     F  Q 
Sbjct: 206 PKPHQYVSLSETPQ----VIIATPGRLLDFIKGGLTLKSITQVVLDEADRMLDMGFEDQI 261

Query: 411 RLKLTQKATAPHVLLMTAT-PIPRTLVLTSLGDID--ISKITEK--PAGRKPIKTVIIPI 465
           R  L +       L  +AT P     +  SL   D    ++ E+     +   ++VII  
Sbjct: 262 RDVLKEVRKDRQTLFFSATWPQEVQRLANSLCSQDPIFLQLGERGLSVNKNITQSVIIAG 321

Query: 466 -NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
            N+ +++IE    +  + KK    C +  + ++  +R        L +H  ++   +HG 
Sbjct: 322 GNKFEQLIEYFNQI--KDKKVLVFCQKKIDTQKLEYR--------LSQHGVNA-RYLHGD 370

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLR 580
           +    ++ +M  F+NG    LI T +   G+DV D  ++I     EN E +    +H++ 
Sbjct: 371 LKQNQRDYIMQDFRNGKVNCLITTNLASRGLDVSDVDVVINYDFPENIEDY----IHRI- 425

Query: 581 GRVGRGEEISSCILLYHP 598
           GR GR  +    +    P
Sbjct: 426 GRTGRAGKKGEALSFIQP 443


>gi|187477179|ref|YP_785203.1| ATP-dependent RNA helicase DbpA [Bordetella avium 197N]
 gi|115421765|emb|CAJ48276.1| ATP-independent RNA helicase [Bordetella avium 197N]
          Length = 462

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 141/320 (44%), Gaps = 34/320 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +  +++      QA+++ P   LA Q  + +++  +   N ++
Sbjct: 45  IAQAKTGSGKTAAFGLGLLQSLDLTRLAPQALVLCPTRELADQVAQELRRLARLIPNVKV 104

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +   + G    A  R   E +A G AH+++GT    QD +    L L     +++DE  R
Sbjct: 105 LT--LCGG---AAGRPQAESLARG-AHLVVGTPGRVQDHLARGNLDLAALKTLVLDEADR 158

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
             V         A A H       P+ R TL+ ++    +I K++ +   R P + V + 
Sbjct: 159 M-VDMGFYDDIVAIASHC------PVKRQTLLFSATYPDNIRKLSARFL-RNPAE-VKVQ 209

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SI 518
                  IE++   + E  +   +   +   + ++   F +   R + L E   +   S 
Sbjct: 210 TQHDASRIEQIFYEIDEADRLDAVATLLAHYRPASTLVFCNTKIRSHELIERLRADGISA 269

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             ++G +   D++ ++  F N +C +L+AT V   G+D+ + S +I  +        +H+
Sbjct: 270 QALNGDLEQRDRDEILIQFANQSCAVLVATDVAARGLDIQNLSAVINVDVSKDTEVHVHR 329

Query: 579 LRGRVGRGEEISSCILLYHP 598
           + GR GRGE+    + L  P
Sbjct: 330 I-GRSGRGEQKGLALSLCSP 348


>gi|39951881|ref|XP_363657.1| hypothetical protein MGG_01583 [Magnaporthe oryzae 70-15]
 gi|152032663|sp|A4RK80|PRP28_MAGO7 RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|145020572|gb|EDK04701.1| hypothetical protein MGG_01583 [Magnaporthe oryzae 70-15]
          Length = 674

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 161/398 (40%), Gaps = 105/398 (26%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKTLVALIAMAAAVEA---------- 320
           PT  Q +AI   LQ         R L G    GSGKT   ++ M + +E           
Sbjct: 280 PTPVQRAAIPIALQ--------CRDLIGISKTGSGKTAAFVLPMLSYIEPLPPLNEVTKT 331

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA---HGQA 376
            G  A+I+AP   LA Q    + K+       V  + GN      ++ +E  A      A
Sbjct: 332 EGPYALILAPTRELATQIQAEVIKFATRMGFTVVCLIGN------KRTIEEDAFALRNGA 385

Query: 377 HIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKL-------------T 415
            II+ T     D ++ + L+L     V++DE  R    G +  +                
Sbjct: 386 EIIVATPGRLVDCLERHLLVLSQCSYVVLDEADRMVDGGFEDSIHKILAALPPSNGKPDD 445

Query: 416 QKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEK----PAGRKPIKTVIIPINRI 468
           + A  P+++    TP  R   T++ ++     + +I +     PA        ++ I  I
Sbjct: 446 RDAEDPNIMSKFLTPNLRYRQTVMYSATMPPSVERIAKNYLKHPA--------MVTIGTI 497

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF----------------NSLHE 512
            E ++ ++      ++A W+    E+++ +  R+++  +                +++ +
Sbjct: 498 GEAVDTVE------QQAMWVVS--EDERRNKLRAMLNTYGTGKLVIVFVNTKSNCDAVAK 549

Query: 513 HFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
              SS      +HG  +   +E+ + SF++G   +L+AT V   G+D+ D S++I  N  
Sbjct: 550 DLKSSSFSAVTLHGNKTQDQREAALQSFRDGRTNVLVATDVAARGLDIPDVSLVI--NFN 607

Query: 570 HFGLAQLHQLR-GRVGR----GEEISSC-----ILLYH 597
             G  +++  R GR GR    G  I+ C      +LYH
Sbjct: 608 MAGTIEVYTHRIGRTGRAGKEGMAITFCGPEDHGVLYH 645


>gi|51317205|gb|AAT99858.1| unknown [Diachasmimorpha longicaudata entomopoxvirus]
          Length = 379

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 141/323 (43%), Gaps = 65/323 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP---IGILAQQHYEFIKKYTQNTQI 350
           I+Q   G+GKT    I++   ++      QA+I+ P   + + AQ+  + I  Y  N + 
Sbjct: 47  IVQAQSGTGKTATYAISVLQQIDTSNSNIQALILTPTRELALQAQRVLQTIGNYLYNFK- 105

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHR 405
             ++  G       ++ L++     A ++IGT       L + SI    + +V++DE   
Sbjct: 106 -CQVCIGGTSIKESQETLKK-----AQVLIGTPGRMIDLLTRKSIDTKAIKIVVIDEADE 159

Query: 406 FGVQQRLKLTQK-----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
             +   L   Q       +   V+L++AT +P  ++ TS           +   R P+K 
Sbjct: 160 MLIDNFLDKIQDIFEFFESHVQVILLSAT-VPSRVINTS-----------QVFMRDPVKI 207

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---------------FRSVVE 505
           ++          +  ++ L EG + Y+I  +  + K                  F +   
Sbjct: 208 LV----------KNAELTL-EGIRQYYINVKKNDFKAETLFDLYDHLSLTQTLIFCNTRR 256

Query: 506 RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + + L E  T+   + + IHG MS  +++ +M  F++G  ++L++T ++  GIDV   S+
Sbjct: 257 QVDVLMECLTNRNFTASSIHGDMSQQERDFIMKEFRDGKTRILLSTNLLARGIDVQQISL 316

Query: 563 IIIENAEHFGLAQLHQLRGRVGR 585
           +I  +  H     +H++ GR GR
Sbjct: 317 VINYDLPHNRENYIHRI-GRSGR 338


>gi|148544397|ref|YP_001271767.1| replication restart DNA helicase PriA [Lactobacillus reuteri DSM
           20016]
 gi|184153761|ref|YP_001842102.1| primosomal protein N' [Lactobacillus reuteri JCM 1112]
 gi|227363178|ref|ZP_03847312.1| primosomal replication protein n [Lactobacillus reuteri MM2-3]
 gi|325682717|ref|ZP_08162233.1| primosome assembly protein PriA [Lactobacillus reuteri MM4-1A]
 gi|148531431|gb|ABQ83430.1| replication restart DNA helicase PriA [Lactobacillus reuteri DSM
           20016]
 gi|183225105|dbj|BAG25622.1| primosomal protein N' [Lactobacillus reuteri JCM 1112]
 gi|227071784|gb|EEI10073.1| primosomal replication protein n [Lactobacillus reuteri MM2-3]
 gi|324977067|gb|EGC14018.1| primosome assembly protein PriA [Lactobacillus reuteri MM4-1A]
          Length = 809

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 17/172 (9%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P      Q++A+  I Q +   +  + +LQG  GSGKT V L ++A A++ G  A+++ P
Sbjct: 270 PLQLNADQQNAVNQINQAIDNHDPKVFLLQGVTGSGKTEVYLQSIANALQQGKTALMLVP 329

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQD 388
              L  Q    + +  +     V ++  ++    R     RI  G+A +++G   A+F  
Sbjct: 330 EISLTPQ---IVNRVRRRFGSKVAVLHSSLSNGERYDEWRRIERGEAQVVVGARSAVF-- 384

Query: 389 SIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP 430
                 L L+I+DE+H          R+  ++  K   K     V+L +ATP
Sbjct: 385 -APLTNLGLIILDEEHESSYKQDESPRYQAREVAKWRGKYNQAPVVLGSATP 435


>gi|88799633|ref|ZP_01115209.1| primosome assembly protein PriA [Reinekea sp. MED297]
 gi|88777718|gb|EAR08917.1| primosome assembly protein PriA [Reinekea sp. MED297]
          Length = 730

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 19/172 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L A+   +  G +A+++ P IG+  Q    F +++     I+   +
Sbjct: 224 LLEGITGSGKTEVYLQAIERCLSRGHRALVLIPEIGLTPQTVARFERRFRDRCVILHSGL 283

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR---- 411
           T       R  A  +  HGQA I+IGT +     I    L L+++DE+H    +Q+    
Sbjct: 284 TDK----QRTLAWLQANHGQAAIVIGTRSAVLTPIP--DLGLIVIDEEHDASFKQQDTLR 337

Query: 412 -------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
                  LK  Q A  P ++L TATP   TL     G     ++ E+  G +
Sbjct: 338 YQARDVALKRAQLADIP-IILGTATPSLETLHNALTGRFGHLQLKERAGGAR 388


>gi|326793753|ref|YP_004311573.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326544517|gb|ADZ89737.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 425

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 137/309 (44%), Gaps = 41/309 (13%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHI 378
           +A+++ P   LA Q +E    Y+QN  +  E++ G +   PQ  + R+ ++ +      +
Sbjct: 75  RALVLTPTRELAAQVHENAAAYSQNLPLRAEVVFGGVKINPQMMKLRRGVDVLVATPGRL 134

Query: 379 IIGTHALF-QDSIQYYKLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATP 430
           +     LF Q++I + +L ++++DE  R         +++ LKL  K             
Sbjct: 135 L----DLFSQNAISFKQLEILVLDEADRMLDMGFIHDIKRILKLLPKER----------- 179

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +TL+ ++    DI ++ +    +  ++  + P N   EVI +  + + + KK+  +  
Sbjct: 180 --QTLLFSATFSDDIRELAQNVV-KDAVEVSVTPPNTTVEVIRQSLIPVDKSKKSAALKF 236

Query: 491 QIEEKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            I+ +  S        +    R  +L +      A IHG  S   +   +  FK+G  ++
Sbjct: 237 LIQSRDLSQVLVFSRTKHGANRLATLFQKAGIEAAAIHGNKSQGARTKALAGFKSGEIRV 296

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT +   GID+     ++  +  +     +H++ GR GR       I L    +S++ 
Sbjct: 297 LVATDIAARGIDIDQLPHVVNFDLPNVPADYVHRI-GRTGRAGATGEAISL----VSEDE 351

Query: 605 YTRLSVLKN 613
             +LS ++N
Sbjct: 352 ADQLSDIEN 360


>gi|160880625|ref|YP_001559593.1| primosomal protein N' [Clostridium phytofermentans ISDg]
 gi|160429291|gb|ABX42854.1| primosomal protein N' [Clostridium phytofermentans ISDg]
          Length = 792

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 9/146 (6%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           IA K   +   S    Q+  +  +L+D  +  R   ++ G  GSGKT V +  +   +++
Sbjct: 194 IASKTTDSYSISLNYEQQEIVSKVLKDYEEGIRKTYLIHGITGSGKTEVYMGIIDQVIQS 253

Query: 321 GGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           G Q +++ P I +  Q    F K++       + I+   M    R   +ER  +G   I+
Sbjct: 254 GRQVIMLIPEIALTYQTVVRFYKRFGNR----ISILNSKMSAGERYDQIERAKNGDIDIM 309

Query: 380 IGTH-ALFQDSIQYYKLILVIVDEQH 404
           IG   ALF     +  L L+I+DE+H
Sbjct: 310 IGPRSALF---TPFKDLGLIIIDEEH 332


>gi|197099326|ref|NP_001126958.1| probable ATP-dependent RNA helicase DDX5 [Pongo abelii]
 gi|75061603|sp|Q5R4I9|DDX5_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|55733290|emb|CAH93327.1| hypothetical protein [Pongo abelii]
          Length = 614

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 153/396 (38%), Gaps = 65/396 (16%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E   P NV   IA++        PT  Q       L  +     M+ + Q   GSGKTL 
Sbjct: 98  EANFPANVMDVIARQNFT----EPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLS 147

Query: 310 ALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L+     +          G   +++AP   LAQQ  +   +Y +  ++    I G  P+
Sbjct: 148 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 207

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ---- 409
             + + LER       I I T     D ++  K  L     +++DE  R    G +    
Sbjct: 208 GPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIR 263

Query: 410 --------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                    R  L   AT P  +   A    +  +  ++G +++S      A    ++ V
Sbjct: 264 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------ANHNILQIV 317

Query: 462 II--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517
            +   + + +++I  ++ ++SE           +E K   F     R + L         
Sbjct: 318 DVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELTRKMRRDGW 366

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  +  +     +
Sbjct: 367 PAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYI 426

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 427 HRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 461


>gi|14211584|dbj|BAB56110.1| vasa short form [Oreochromis niloticus]
          Length = 621

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/385 (20%), Positives = 153/385 (39%), Gaps = 74/385 (19%)

Query: 258 EGKIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           E  + + + RN+  S    PT  Q+  I  I    S    ++   Q   GSGKT   L+ 
Sbjct: 187 EAALCESLKRNVSKSGYVKPTPVQKHGIPII----SAGRDLMACAQ--TGSGKTAAFLLP 240

Query: 314 MAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           +   + A G             A+I+AP   L  Q Y   +K+   T +   ++ G +  
Sbjct: 241 ILQQLMADGAAASCFSEMQEPDAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVST 300

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQ 416
            H+ + L R      +++ GT     D I   K+ L     +++DE  R        +  
Sbjct: 301 GHQIRDLLR----GCNVLCGTPGRLLDMIGRGKVGLTKVRYLVLDEADR--------MLD 348

Query: 417 KATAPHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK--------------PAGRK 456
               P +  +  +P +P     +TL+ ++    DI ++                      
Sbjct: 349 MGFEPDMRRLVGSPGMPSKENRQTLMFSATFPEDIQRLAADFLKTDYLFLAVGIVGGACS 408

Query: 457 PIKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            ++   + + +    +++I+ LK   SE    +     +E K++++F + +       E 
Sbjct: 409 DVEQTFVQVTKFAKREQLIDLLKSTGSERTMVF-----VETKRQADFIATI----LCQEK 459

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F ++   IHG      +E  +  F++G C +L+AT+V   G+D+ D   ++  +  +   
Sbjct: 460 FPTTS--IHGDREQWQREQALGDFRSGKCSVLVATSVGARGLDIPDVQFVVNFDLPNNID 517

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
             +H++ GR GR       +  Y P
Sbjct: 518 EYVHRI-GRTGRCGNTGRAVSFYDP 541


>gi|301755882|ref|XP_002913779.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ailuropoda
           melanoleuca]
          Length = 739

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 136/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 180 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 239

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     +  I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 240 LSVAC-FYGGTSYQSQ----INHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 293

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTATPIP------RTLVLTSLG 441
                V Q L L               T     P  LL +AT  P      +  + +   
Sbjct: 294 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPPWVYKVAKKYMKSRYE 348

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 349 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 402

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 403 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 458

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 459 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 496


>gi|209559794|ref|YP_002286266.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
 gi|209540995|gb|ACI61571.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
          Length = 447

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 133/316 (42%), Gaps = 33/316 (10%)

Query: 302 VGSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK---KYTQNTQIIVEII 355
            GSGKT   L+ +       +A  Q VI AP   LA Q ++  K   KY+Q    +   +
Sbjct: 47  TGSGKTHTFLLPIFEKLDETKAEVQVVITAPSRELATQIFDVCKQIAKYSQEEIRLANYV 106

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQ 410
            G      + + +E++   Q HI+IGT     D ++      +K    +VDE        
Sbjct: 107 GGT----DKLRQIEKLKGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMG 162

Query: 411 RLKLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            L +  K  A       +L+++AT IP+ L         + K    P   + IKT  +  
Sbjct: 163 FLDMVDKIAASLPKSVQILVVSAT-IPQKLQPF------LKKYLTNPVIEQ-IKTKTVIA 214

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIH 522
           + ID  +   K     G+    I   ++      F +  ER + LH   T++   +A IH
Sbjct: 215 DTIDNWLVSTKGRDKNGQ-LLEILKTMQPYMAMLFVNTKERADDLHAFLTANGLKVAKIH 273

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G +   +++ +M+  K    + ++AT +   GID+   S +I +         +H++ GR
Sbjct: 274 GGIPPRERKRIMNQVKKLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GR 332

Query: 583 VGRGEEISSCILLYHP 598
            GR     + I LY P
Sbjct: 333 TGRNGMAGTAITLYQP 348


>gi|145234506|ref|XP_001400624.1| ATP-dependent RNA helicase dbp3 [Aspergillus niger CBS 513.88]
 gi|134034068|sp|A2QFL3|DBP3_ASPNC RecName: Full=ATP-dependent RNA helicase dbp3
 gi|134057571|emb|CAK37981.1| unnamed protein product [Aspergillus niger]
          Length = 495

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 145/346 (41%), Gaps = 50/346 (14%)

Query: 300 GDVGSGKTL----VALIAMAAAVEAGG----QAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL      L  +  + + G      AV+++P   LA Q ++ I K+ +   I 
Sbjct: 122 AETGSGKTLGFGLPCLKNLQDSAKKGKPYKPTAVMISPTRELAMQIHDQISKFAELVDIK 181

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
           V  I G + +  +R+AL+  A     I++ T    +D     S+   K+  +++DE  R 
Sbjct: 182 VACIFGGVKKEEQREALKTAA-----IVVATPGRLKDLQNDGSVDLGKVKYLVLDEADRM 236

Query: 407 ---GVQQRLK---LTQKATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPI 458
              G +Q +K        +    ++ TAT  P+ R L  T +       I  +P+     
Sbjct: 237 LDKGFEQDIKDIIRPMPVSKRQTVMFTATWPPVVRDLAATFMTSPVTVTIGGEPSADPRA 296

Query: 459 KTVIIPINRIDEVIERLKVVLSEGK-----KAYWICPQIEEK-------KESNFRSVVER 506
            T      RI +V+E +K    E +       Y   P   +K       K+   R  VER
Sbjct: 297 NT------RIKQVVEVVKPHEKEQRLVQLLNKYQKGPSSSDKILVFCLYKKEAVR--VER 348

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
               ++ F   +A IHG +   ++   ++SFK G   +L+AT V   G+D+    ++I  
Sbjct: 349 L-LWNKGF--KVAGIHGDLGQQERFKSLESFKKGVSTVLVATDVAARGLDIPSVKLVINV 405

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
                    +H++ GR GR       I L+       S   ++VLK
Sbjct: 406 TFPLTVEDYVHRI-GRTGRAGAEGHAITLFTEVDKAQSGALINVLK 450


>gi|39937062|ref|NP_949338.1| putative DEAD-box protein ATP-independent RNA helicase
           [Rhodopseudomonas palustris CGA009]
 gi|39650919|emb|CAE29442.1| putative DEAD-box protein, ATP-independent RNA helicase
           [Rhodopseudomonas palustris CGA009]
          Length = 694

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 142/329 (43%), Gaps = 46/329 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A  +    +         A+I+AP   LA Q H E    Y  
Sbjct: 43  LVSAQTGSGKTVAYGLAIAQDLLGDAEQFAPAAAPLALIVAPTRELALQVHRELSWLYRH 102

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILV 398
               IV  + G  P+  +R+    +A G AHI++GT     D ++  +L        +L 
Sbjct: 103 AGGRIVSCVGGMDPRREQRE----LADG-AHIVVGTPGRLCDHLRRNRLDVSQLKAVVLD 157

Query: 399 IVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV-LTSLGDIDISKITEKPA-- 453
             DE    G ++ ++   + T      LL +AT +PR ++ L      D  +I  + A  
Sbjct: 158 EADEMLDLGFREDMEFILETTPETRRTLLFSAT-LPRGIIALAKTYQHDAMRIEVEGAEG 216

Query: 454 GRKPI--KTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           G   I  + + I  N ++  V+  L+ V  E   A   C         N RS V    + 
Sbjct: 217 GHADIEYRAIRIAPNDVEHAVVNVLRYV--ESPTAIVFC---------NTRSAVNHLQTA 265

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 ++  + G ++  ++   +++ ++G  ++ +AT V   GID+ +  ++I  +AE 
Sbjct: 266 LLERGFAVVALSGELTQNERTGALNALRDGRARVCVATDVAARGIDLPNLGLVI--HAEL 323

Query: 571 FGLAQLHQLR-GRVGRGEEISSCILLYHP 598
              A++ Q R GR GR       +LL  P
Sbjct: 324 PNDAEVMQHRSGRTGRAGNKGVSVLLVPP 352


>gi|227513477|ref|ZP_03943526.1| primosomal replication protein n [Lactobacillus buchneri ATCC
           11577]
 gi|227083350|gb|EEI18662.1| primosomal replication protein n [Lactobacillus buchneri ATCC
           11577]
          Length = 798

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 5/148 (3%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q + ++ P    + Q++A+  I   + ++     +L+G  GSGKT V L AMA A+  G 
Sbjct: 253 QPVSKSYPLDLNEDQQTAVNRINNAIGKQTDTTFLLEGVTGSGKTEVYLQAMAHALSIGK 312

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   L  Q    I+    +    V ++   M    R    +RI  GQA +++G 
Sbjct: 313 TALMLVPEITLTPQIVGRIRSRFGDQ---VAMLHSAMSSGERYDEWQRINSGQAKVVVGV 369

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            +     ++   + L+I+DE+H    +Q
Sbjct: 370 RSAIFAPLE--NIGLIIMDEEHDSSYKQ 395


>gi|148235554|ref|NP_001080632.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [Xenopus laevis]
 gi|28436904|gb|AAH46696.1| Ddx19-prov protein [Xenopus laevis]
          Length = 487

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 133/326 (40%), Gaps = 69/326 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+K QE+A+  +L +  Q      I Q   G+GKT   ++AM + V+      Q + ++P
Sbjct: 124 PSKIQENALPMMLAEPPQN----LIAQSQSGTGKTAAFVLAMLSRVDPANRYPQCLCLSP 179

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I++  Q + I        +  A R K LER      HI+IGT     D 
Sbjct: 180 TYELALQTGKVIEQMGQFSNI-------KLAYAVRGKKLERGHKIPEHIVIGTPGTVLDW 232

Query: 390 IQYYKLI------LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               + I      + ++DE         +  TQ      + +    P    ++L      
Sbjct: 233 CSKLRFIDPKKIKVFVLDE------ADVMIATQGHQDQSIRIQKMLPRDCQMLL------ 280

Query: 444 DISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             S   E+   R   K V    II + R +E ++ +       K+ Y +C   ++K    
Sbjct: 281 -FSATFEESVWRFAQKVVPEPNIIKLKREEETLDTI-------KQYYVMCNNRDDK---- 328

Query: 500 FRSVVERFNSL---------HEHFTSS------------IAIIHGRMSDIDKESVMDSFK 538
           FR++   + S+         H   T+S            +A++ G M    + +V+D F+
Sbjct: 329 FRALCNIYGSITIAQAMIFCHTRKTASWLAGELYKEGHQVAMLSGEMMVEQRAAVIDRFR 388

Query: 539 NGTCKLLIATTVIEVGIDVVDASIII 564
            G  K+L+ T V   GIDV   S++I
Sbjct: 389 EGKEKVLVTTNVCARGIDVEQVSVVI 414


>gi|227510468|ref|ZP_03940517.1| primosomal replication protein n [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190120|gb|EEI70187.1| primosomal replication protein n [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 798

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 5/148 (3%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q + ++ P    + Q++A+  I   + ++     +L+G  GSGKT V L AMA A+  G 
Sbjct: 253 QPVSKSYPLDLNEDQQTAVNRINNAIGKQTDTTFLLEGVTGSGKTEVYLQAMAHALSIGK 312

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   L  Q    I+    +    V ++   M    R    +RI  GQA +++G 
Sbjct: 313 TALMLVPEITLTPQIVGRIRSRFGDQ---VAMLHSAMSSGERYDEWQRINSGQAKVVVGV 369

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            +     ++   + L+I+DE+H    +Q
Sbjct: 370 RSAIFAPLE--NIGLIIMDEEHDSSYKQ 395


>gi|221212569|ref|ZP_03585546.1| ATP-dependent DNA helicase RecQ [Burkholderia multivorans CGD1]
 gi|221167668|gb|EEE00138.1| ATP-dependent DNA helicase RecQ [Burkholderia multivorans CGD1]
          Length = 607

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF----G 572
           S+A  HGRM   ++    D F NG  +L++AT    +GID  D   +I     H+     
Sbjct: 274 SVARYHGRMPARERRDEQDRFMNGDARLIVATNAFGMGIDKPDVRFVI-----HYQIPGN 328

Query: 573 LAQLHQLRGRVGRGEEISSCILLY 596
           L   +Q  GR GR  E + C+LL+
Sbjct: 329 LDAYYQETGRAGRDGEAADCVLLF 352


>gi|163746995|ref|ZP_02154351.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161379556|gb|EDQ03969.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 529

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 162/379 (42%), Gaps = 52/379 (13%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------L 308
           +N+  K+ + ++     SPT  Q  AI   L+       +L I Q   G+GKT      +
Sbjct: 7   LNLNAKVLKAVVEAGYESPTPIQAGAIPPALEGRD----VLGIAQ--TGTGKTASFTLPM 60

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           ++L+A   A     +++++ P   LA Q  E    Y+++ ++   ++ G +    + K +
Sbjct: 61  LSLLARGRARARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLI 120

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQ 416
           ++       ++I T     D  +  KLIL     ++VDE  R         +++   LT 
Sbjct: 121 DK----GVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTP 176

Query: 417 KATAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIK--TVIIPINRID-EV 471
                  L  +AT  P    +T+  L + +  ++  +    + I    V+   +R D E 
Sbjct: 177 FTR--QTLFFSATMAPEIERITNTFLSNPERIEVARQATTSENITQGVVMFKASRKDREA 234

Query: 472 IERLKV----VLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
            E+ K+    + +EG+K   A   C      ++ +  +V +   SL +H   + A IHG 
Sbjct: 235 TEKRKLLRMLIDAEGEKCTNAIIFC-----NRKMDVDTVAK---SLKKHGYDA-APIHGD 285

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +    +   +D F+NG  + LIA+ V   G+DV   S +   +        +H++ GR G
Sbjct: 286 LDQSQRTKTLDGFRNGELRFLIASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRI-GRTG 344

Query: 585 RGEEISSCILLYHPPLSKN 603
           R       I++  P   KN
Sbjct: 345 RAGRDGKAIMICVPRDEKN 363


>gi|197099360|ref|NP_001124720.1| ATP-dependent RNA helicase DDX3Y [Pongo abelii]
 gi|73620771|sp|Q5RF43|DDX3Y_PONAB RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|55725665|emb|CAH89614.1| hypothetical protein [Pongo abelii]
          Length = 658

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 170/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK----------- 260
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 128 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGSNCPPHIENFSD 182

Query: 261 --IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-- 312
             + + I+ NI  +    PT  Q+ AI  I      K  ++   Q   GSGKT   L+  
Sbjct: 183 IDMGEIIMGNIELTRYTRPTPVQKHAIPII----KGKRDLMACAQ--TGSGKTAAFLLPI 236

Query: 313 -----------AMAAAVEAG--GQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
                      A+ A  E G  G+      ++++AP   LA Q YE  +K++  +++   
Sbjct: 237 LSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 296

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 297 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 352

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 353 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 411

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  +D+    L ++ + G+ +  +   +E KK ++    +E F   HE +  
Sbjct: 412 NITQKVVWVEDLDKRSFLLDLLGATGRDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 464

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 465 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVI 512


>gi|197692465|dbj|BAG70196.1| ATP-dependent RNA helicase DDX5 [Homo sapiens]
          Length = 614

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 153/396 (38%), Gaps = 65/396 (16%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E   P NV   IA++        PT  Q       L  +     M+ + Q   GSGKTL 
Sbjct: 98  EANFPANVMDVIARQNFT----EPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLS 147

Query: 310 ALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L+     +          G   +++AP   LAQQ  +   +Y +  ++    I G  P+
Sbjct: 148 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 207

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ---- 409
             + + LER       I I T     D ++  K  L     +++DE  R    G +    
Sbjct: 208 GPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIR 263

Query: 410 --------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                    R  L   AT P  +   A    +  +  ++G +++S      A    ++ V
Sbjct: 264 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------ANHNILQIV 317

Query: 462 II--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517
            +   + + +++I  ++ ++SE           +E K   F     R + L         
Sbjct: 318 DVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELTRKMRRDGW 366

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  +  +     +
Sbjct: 367 PAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYI 426

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 427 HRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 461


>gi|161521133|ref|YP_001584560.1| ATP-dependent DNA helicase RecQ [Burkholderia multivorans ATCC
           17616]
 gi|189352689|ref|YP_001948316.1| ATP-dependent DNA helicase [Burkholderia multivorans ATCC 17616]
 gi|160345183|gb|ABX18268.1| ATP-dependent DNA helicase, RecQ family [Burkholderia multivorans
           ATCC 17616]
 gi|189336711|dbj|BAG45780.1| ATP-dependent DNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 607

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V+R  +       S+A  HGRM   ++    D F NG  +L++AT    +GID  D   +
Sbjct: 261 VQRVWTWLAASGESVARYHGRMPARERRDEQDRFMNGDARLIVATNAFGMGIDKPDVRFV 320

Query: 564 IIENAEHF----GLAQLHQLRGRVGRGEEISSCILLY 596
           I     H+     L   +Q  GR GR  E + C+LL+
Sbjct: 321 I-----HYQIPGNLDAYYQETGRAGRDGEAADCVLLF 352


>gi|307326471|ref|ZP_07605666.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306887879|gb|EFN18870.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 559

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 137/345 (39%), Gaps = 37/345 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV-ALIAMAAAVEAGG----QAVIM 327
           PT  Q  AI  +L       R L + Q   G+GKT   AL  +    + GG     A+++
Sbjct: 33  PTPIQREAIPPLLD-----GRDL-LGQAATGTGKTAAFALPVLQRISQDGGGAEPSALVL 86

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHGQAHIIIG 381
            P   LA Q  E I +Y ++    V  + G  P   + +ALER         G+A   IG
Sbjct: 87  VPTRELAMQASEAIHRYGRDLGTRVLPVYGGQPIGRQLRALERGVDVVVATPGRALDHIG 146

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
              L  DS++   L+L   DE    G  + +    + T      +L +AT   R   +  
Sbjct: 147 RGTLRLDSLET--LVLDEADEMLDMGFAEDIDAILEGTPADRQTVLFSATMPARIDAMAR 204

Query: 440 L---GDIDISKITEKPA-GRKP-IKTVIIPINRIDEVIERLKVVLSEGKKAYWI-CPQIE 493
               G + I    EKPA G  P ++     + R  +     +V+  E  +A  + C    
Sbjct: 205 RHLRGPVRIQIEREKPAPGETPKVRQSAYVVARAQKPAALGRVLDVESPEATIVFC---- 260

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R  V++              +HG M    ++ VM   + GT  LL+AT V   
Sbjct: 261 -----RTRDQVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRVRGGTADLLVATDVAAR 315

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   + ++  +      + +H++ GRVGR       I L  P
Sbjct: 316 GLDIEQLTHVVNYDVPSAPESYVHRI-GRVGRAGREGVAITLAEP 359


>gi|291404258|ref|XP_002718495.1| PREDICTED: nucleolar protein GU2 [Oryctolagus cuniculus]
          Length = 735

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 136/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + V         ++AP   LA Q  +  K  T+ 
Sbjct: 176 IAQARTGTGKTFSFAIPLIERLQRNQETVKKSRSPKVLVLAPTRELANQVAKDFKDITRK 235

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     +  I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 236 LSVAC-FYGGTSYQSQ----INHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 289

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 290 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 344

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 345 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 398

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 399 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 454

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 455 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 492


>gi|240850330|ref|YP_002971723.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
           grahamii as4aup]
 gi|240267453|gb|ACS51041.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
           grahamii as4aup]
          Length = 467

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 141/340 (41%), Gaps = 47/340 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q   I  +LQ    +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 28  TPTPIQSETIPHVLQ----RKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 81

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   +A Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 82  ILEPTREIAAQVEENFDKYGINHRLNVALLIGGVSFELQDRKLER----GADVLIATPGR 137

Query: 386 FQDSIQYYKLILV-----IVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPR 433
             D  +  KL+L+     ++DE  R         +++  KLT        L  +AT  P 
Sbjct: 138 LLDHCERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLT--PFTRQTLFFSATMAPE 195

Query: 434 TLVLT-----SLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
              LT     S   ++++K   T     ++ +K+     ++   + E +    +E + A 
Sbjct: 196 ITKLTKQFLHSPVSVEVTKASSTATTITQRLVKSGSKSWDKRAVLRELIHNEGAELQNAI 255

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C        +  R + E F SL  H   S+  +HG M    + S +  FK+    LL+
Sbjct: 256 IFC--------NRKRDISELFRSLVRH-NFSVGALHGDMDQYSRMSTLADFKDNKLTLLV 306

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           A+ V   G+D+   S +   +        +H++ GR GR 
Sbjct: 307 ASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRI-GRTGRA 345


>gi|227893520|ref|ZP_04011325.1| ATP-dependent helicase [Lactobacillus ultunensis DSM 16047]
 gi|227864690|gb|EEJ72111.1| ATP-dependent helicase [Lactobacillus ultunensis DSM 16047]
          Length = 588

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 128/317 (40%), Gaps = 41/317 (12%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK++   +    A+   G  ++++P+  L +   + +K+      I    +    PQ
Sbjct: 39  TGAGKSVCYQVP---ALMNSGVTLVISPLISLMKDQIDSLKQ----NGINAAALNSATPQ 91

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---------RFG 407
                 L +   G+  +I  T        F+  + +  + LV VDE H         R  
Sbjct: 92  EEVNPILRQAYQGKIKLIYITPERLAMDYFRYQLNFLDIDLVAVDEAHCISQWGHDFRPA 151

Query: 408 VQQRLK-LTQKATAPHVLLMTATPIPRTLVLTSLGD-IDISK----ITEKPAGRKPIKTV 461
            +Q L+ +    + P++L +TAT  P   V   +G+ ++I K    IT         K V
Sbjct: 152 YRQLLEGINSLKSKPNILALTATATP--AVQDDIGEQLNIPKENFVITSFARPNLSFKVV 209

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
             P N    + + +K    E    Y           +N R  VE           S+   
Sbjct: 210 NSPQNTPLYIAKYIKAHEGEAGIVY-----------TNTRKKVESLTDYLAKKGISVGAY 258

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG M   +++ + ++F+    ++++AT    +GID  +   +I  ++    +   +Q  G
Sbjct: 259 HGGMDSKERDEIQEAFQFDRFQVIVATNAFGMGIDKSNVRFVIHASSAR-NIESYYQEAG 317

Query: 582 RVGRGEEISSCILLYHP 598
           R GR  E S  I++YHP
Sbjct: 318 RAGRDGEESEAIMIYHP 334


>gi|194216755|ref|XP_001495197.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX5
           (DEAD box protein 5) (RNA helicase p68) [Equus caballus]
          Length = 614

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 153/396 (38%), Gaps = 65/396 (16%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E   P NV   IA++        PT  Q       L  +     M+ + Q   GSGKTL 
Sbjct: 98  EANFPANVMDVIARQNFT----EPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLS 147

Query: 310 ALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L+     +          G   +++AP   LAQQ  +   +Y +  ++    I G  P+
Sbjct: 148 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 207

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ---- 409
             + + LER       I I T     D ++  K  L     +++DE  R    G +    
Sbjct: 208 GPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIR 263

Query: 410 --------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                    R  L   AT P  +   A    +  +  ++G +++S      A    ++ V
Sbjct: 264 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------ANHNILQIV 317

Query: 462 II--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517
            +   + + +++I  ++ ++SE           +E K   F     R + L         
Sbjct: 318 DVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELTRKMRRDGW 366

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  +  +     +
Sbjct: 367 PAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYI 426

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 427 HRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 461


>gi|30584123|gb|AAP36310.1| Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA
           helicase, 68kDa) [synthetic construct]
 gi|60653929|gb|AAX29657.1| DEAD box polypeptide 5 [synthetic construct]
          Length = 615

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 140 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKST 199

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 200 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  +  ++G +++S      A
Sbjct: 256 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------A 309

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + +++I  ++ ++SE           +E K   F     R + L 
Sbjct: 310 NHNILQIVDVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELT 358

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 359 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 418

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 419 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 461


>gi|83816893|ref|NP_031866.2| probable ATP-dependent RNA helicase DDX5 [Mus musculus]
 gi|26354006|dbj|BAC40633.1| unnamed protein product [Mus musculus]
 gi|74141529|dbj|BAE38540.1| unnamed protein product [Mus musculus]
 gi|74177712|dbj|BAE38954.1| unnamed protein product [Mus musculus]
 gi|82568932|gb|AAI08370.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|120537322|gb|AAI29875.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|123243266|emb|CAM18566.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|127799027|gb|AAH62916.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|148702364|gb|EDL34311.1| mCG2872, isoform CRA_a [Mus musculus]
 gi|148702366|gb|EDL34313.1| mCG2872, isoform CRA_a [Mus musculus]
 gi|148702367|gb|EDL34314.1| mCG2872, isoform CRA_a [Mus musculus]
          Length = 615

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 140 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKST 199

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 200 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  +  ++G +++S      A
Sbjct: 256 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------A 309

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + +++I  ++ ++SE           +E K   F     R + L 
Sbjct: 310 NHNILQIVDVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELT 358

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 359 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 418

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 419 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 461


>gi|120538559|gb|AAI29874.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
          Length = 615

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 140 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKST 199

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 200 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  +  ++G +++S      A
Sbjct: 256 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------A 309

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + +++I  ++ ++SE           +E K   F     R + L 
Sbjct: 310 NHNILQIVDVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELT 358

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 359 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 418

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 419 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 461


>gi|4758138|ref|NP_004387.1| probable ATP-dependent RNA helicase DDX5 [Homo sapiens]
 gi|300793700|ref|NP_001178324.1| probable ATP-dependent RNA helicase DDX5 [Bos taurus]
 gi|73965213|ref|XP_850467.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 2 [Canis
           familiaris]
 gi|109116805|ref|XP_001109860.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Macaca
           mulatta]
 gi|297487273|ref|XP_002696148.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2 [Bos
           taurus]
 gi|301778273|ref|XP_002924553.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Ailuropoda melanoleuca]
 gi|332227004|ref|XP_003262677.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Nomascus
           leucogenys]
 gi|129383|sp|P17844|DDX5_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5; AltName: Full=RNA helicase p68
 gi|35220|emb|CAA36324.1| unnamed protein product [Homo sapiens]
 gi|38318|emb|CAA33751.1| unnamed protein product [Homo sapiens]
 gi|2599360|gb|AAB84094.1| RNA helicase p68 [Homo sapiens]
 gi|16359122|gb|AAH16027.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens]
 gi|30582725|gb|AAP35589.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase,
           68kDa) [Homo sapiens]
 gi|61362303|gb|AAX42197.1| DEAD box polypeptide 5 [synthetic construct]
 gi|61362310|gb|AAX42198.1| DEAD box polypeptide 5 [synthetic construct]
 gi|119614608|gb|EAW94202.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, isoform CRA_a [Homo
           sapiens]
 gi|119614609|gb|EAW94203.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, isoform CRA_a [Homo
           sapiens]
 gi|123979568|gb|ABM81613.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [synthetic construct]
 gi|123994197|gb|ABM84700.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [synthetic construct]
 gi|168277560|dbj|BAG10758.1| ATP-dependent RNA helicase DDX5 [synthetic construct]
 gi|197692215|dbj|BAG70071.1| ATP-dependent RNA helicase DDX5 [Homo sapiens]
 gi|296476161|gb|DAA18276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2 [Bos taurus]
          Length = 614

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 153/396 (38%), Gaps = 65/396 (16%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E   P NV   IA++        PT  Q       L  +     M+ + Q   GSGKTL 
Sbjct: 98  EANFPANVMDVIARQNFT----EPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLS 147

Query: 310 ALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L+     +          G   +++AP   LAQQ  +   +Y +  ++    I G  P+
Sbjct: 148 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 207

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ---- 409
             + + LER       I I T     D ++  K  L     +++DE  R    G +    
Sbjct: 208 GPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIR 263

Query: 410 --------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                    R  L   AT P  +   A    +  +  ++G +++S      A    ++ V
Sbjct: 264 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------ANHNILQIV 317

Query: 462 II--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517
            +   + + +++I  ++ ++SE           +E K   F     R + L         
Sbjct: 318 DVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELTRKMRRDGW 366

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  +  +     +
Sbjct: 367 PAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYI 426

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 427 HRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 461


>gi|195480298|ref|XP_002101215.1| GE17497 [Drosophila yakuba]
 gi|194188739|gb|EDX02323.1| GE17497 [Drosophila yakuba]
          Length = 962

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E +T++   IHG  +  +++SV+  F+NG   +LIAT V   G+DV D   +I  +  + 
Sbjct: 516 EGYTATS--IHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNS 573

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
               +H++ GR GR +++ +    + P  +K +   +SVL+
Sbjct: 574 SENYVHRI-GRTGRCQQLGTAYTFFTPDNAKQARELISVLE 613


>gi|168015786|ref|XP_001760431.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688445|gb|EDQ74822.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 675

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 134/310 (43%), Gaps = 44/310 (14%)

Query: 302 VGSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI     +E        G   +++AP   LA Q  E   K+ ++++I    
Sbjct: 201 TGSGKTLGYLIPAFLHLERHRNNSRLGPSVLVIAPTRELATQIQEECVKFGRSSRITSTC 260

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---- 405
           + G  P+  + + +ER     A I+I T     D ++  K+ L     +++DE  R    
Sbjct: 261 VYGGAPKGPQLRDIER----GADIVIATPGRLNDFLEVKKISLRQVSYLVLDEADRMLDM 316

Query: 406 -FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI------TEKPAGRKPI 458
            F  Q R  + +  +    L+ TAT  P+  V    GD+ I+ +      T++ +  K I
Sbjct: 317 GFEPQIRKIVNEILSRRQTLMYTAT-WPKE-VRKIAGDLLINPVQVNIGNTDELSANKSI 374

Query: 459 KT---VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
                V++P     E   RL+ +L   +    I      K+  +  S      +L   F 
Sbjct: 375 TQHVEVVVPY----EKQRRLEQILRSQEPGSKIIVFCSTKRMCDMLS-----RNLGRDFG 425

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           +  A IHG  S  +++ V+  F+ G   +L+AT V   G+D+ D   ++  +        
Sbjct: 426 A--AAIHGDKSQSERDFVLSQFRTGRTPILVATDVAARGLDIKDIRFVVNYDFPTGVEDY 483

Query: 576 LHQLRGRVGR 585
           +H++ GR GR
Sbjct: 484 VHRI-GRTGR 492


>gi|56090441|ref|NP_001007614.1| probable ATP-dependent RNA helicase DDX5 [Rattus norvegicus]
 gi|50927691|gb|AAH79036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Rattus norvegicus]
 gi|149054596|gb|EDM06413.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
 gi|149054597|gb|EDM06414.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
 gi|149054598|gb|EDM06415.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
          Length = 615

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 140 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKST 199

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 200 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  +  ++G +++S      A
Sbjct: 256 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------A 309

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + +++I  ++ ++SE           +E K   F     R + L 
Sbjct: 310 NHNILQIVDVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELT 358

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 359 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 418

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 419 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 461


>gi|330951415|gb|EGH51675.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae Cit 7]
          Length = 385

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 176/398 (44%), Gaps = 54/398 (13%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           A++M P   LA Q  + I++  ++   I V  + G +    +  +LE   HG AHII+GT
Sbjct: 1   ALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLE---HG-AHIIVGT 56

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLV 436
               Q  ++   L+L     +I+DE  R        L          ++  TP  R TL+
Sbjct: 57  PGRIQQHLRKGSLVLDGLNTLILDEADRM-------LDMGFYDAIADIIEQTPQRRQTLL 109

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++   + I +++ K   R P +TV +     D  IE++   +S  ++   +   +   +
Sbjct: 110 FSATYPVGIKQLSSKFM-RDP-QTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLGHFR 167

Query: 497 ESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            ++   F    ++   + +H T+   S   +HG +   D++ V+  F N +  +L+AT V
Sbjct: 168 PTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDV 227

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILLYHP----------- 598
              G+D +DA  ++I N E    +++H  R GR GR  E    + L  P           
Sbjct: 228 AARGLD-IDALDMVI-NVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEE 285

Query: 599 ----PLSKNSYTRLSVLKNTE-----DGFLIAEEDLKQRKEGEILG--IKQSGMPKFLIA 647
               PL+   Y RLS+ +  +         I      + + G+ILG    ++G+P   + 
Sbjct: 286 LQKAPLNWQQYDRLSIKEGGKLLPAMTTLCIGSGRRDKLRPGDILGALTGEAGIPGTQVG 345

Query: 648 QPELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           +  + D  + + + R  AK  L +  +   ++G+S+R+
Sbjct: 346 KIAIFDFQAYVAVERSMAKQALERLNN-GKIKGKSLRV 382


>gi|328544847|ref|YP_004304956.1| DEAD/DEAH box helicase [Polymorphum gilvum SL003B-26A1]
 gi|326414589|gb|ADZ71652.1| DEAD/DEAH box helicase domain-containing protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 673

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 136/335 (40%), Gaps = 64/335 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A  +              A+ +AP   LA Q   E    Y +
Sbjct: 41  LVSAQTGSGKTVAFGLALAPTLLGDADRLGAAGAPLALAIAPTRELALQVKAELTWLYEE 100

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILV 398
                   + G  P++ RR ALER      HI++GT    +D I        Q   ++L 
Sbjct: 101 AGAQTASCVGGMDPRSERR-ALER----GTHIVVGTPGRLRDHIERGALDLSQLRAVVLD 155

Query: 399 IVDEQHRFGVQQRLKLTQKATAPH---VLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
             DE    G ++ L+    A AP     L+ +AT +P+ +        D+++  +K A R
Sbjct: 156 EADEMLDLGFREDLEFILDA-APEDRRTLMFSAT-VPKPIA-------DLARRFQKDAVR 206

Query: 456 KPIKTV---------------IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
             + T+               + P  R + +I  L+    E  KA   C         + 
Sbjct: 207 --LSTISAREQHGDIDYFAHPVAPNERENAIINVLRFY--EADKAIVFC---------ST 253

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           R  V R  S   +   S+A + G +S  ++   + + ++G  ++ +AT V   GID+ + 
Sbjct: 254 REAVRRLTSRLANRGFSVAALSGELSQNERTHALQAMRDGRARVCVATDVAARGIDLPNL 313

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            ++I  +    G A L    GR GR     S +L+
Sbjct: 314 DLVIHADLP-TGKAGLLHRSGRTGRAGRKGSSVLI 347


>gi|325104434|ref|YP_004274088.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324973282|gb|ADY52266.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 445

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 154/347 (44%), Gaps = 49/347 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-AGG---QAVIMA 328
           PT  QE AI  IL        +L I Q   G+GKT   ++ M   ++ A G   +A+I+A
Sbjct: 26  PTPIQEKAIPPILNGQD----VLGIAQ--TGTGKTAAYVLPMIMKLKFAQGDDIRALILA 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNM-PQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E +K +++ T +   ++ G + P+A      +++A G A I+I T   F 
Sbjct: 80  PTRELALQIEENVKIFSKYTDLRSVVVFGGIGPKAQ----ADQLAKG-ADILIATPGRFM 134

Query: 388 D-----SIQYYKLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           D      I   KL  +++DE  +         + + L++  K      LL +AT   +  
Sbjct: 135 DLYLDGHIVTKKLQFLVLDEADKMMDMGFMPQINKVLEIVPKKR--QNLLFSATMSEKVE 192

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTV---IIPINRIDEVIERLKVVLSEG---KKAYWIC 489
            L+    +  +K+   P    P +TV   +  +  +   I  LK+ + +     K    C
Sbjct: 193 RLSENFLLWPTKVEVTPQA-TPAETVEQELYFVPNLKTKINLLKIFVEDDPDVSKLIIFC 251

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +     E+ +R ++ RFN  H      + ++H       + + ++SFKN   ++L+AT 
Sbjct: 252 -RTRVVAENVYRFLLRRFNENH------VKVLHANKGQNTRINSINSFKNDEVRILVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           V   GIDV   S +I           +H++ GR GR    G+ I+ C
Sbjct: 305 VAARGIDVSSVSHVINFEVPVVYEDYVHRI-GRTGRAFSQGKAITFC 350


>gi|257083201|ref|ZP_05577562.1| primosomal protein n [Enterococcus faecalis Fly1]
 gi|256991231|gb|EEU78533.1| primosomal protein n [Enterococcus faecalis Fly1]
          Length = 810

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 405


>gi|148361177|ref|YP_001252384.1| primosomal protein N' [Legionella pneumophila str. Corby]
 gi|296108512|ref|YP_003620213.1| primosomal protein N' (replication factor Y) (superfamily II
           helicase) [Legionella pneumophila 2300/99 Alcoy]
 gi|148282950|gb|ABQ57038.1| Primosomal protein N' (replication factor Y) [Legionella
           pneumophila str. Corby]
 gi|295650414|gb|ADG26261.1| primosomal protein N' (replication factor Y) (superfamily II
           helicase) [Legionella pneumophila 2300/99 Alcoy]
          Length = 725

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 110/240 (45%), Gaps = 27/240 (11%)

Query: 237 QIALLLMRK--QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           QIA LL  +     +++ +P  +  K++       P +    Q  A+  I + +      
Sbjct: 164 QIAALLACQAINLSQQVILPTKIPEKLSP------PLALNPEQAVAVASIFEHIHHYQCF 217

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVE 353
           L  LQG  GSGKT V L  +A  +E G Q +++ P IG+  Q     + ++T      + 
Sbjct: 218 L--LQGVTGSGKTEVYLHVIAKILEQGKQVLVLVPEIGLTPQ----LLSRFTARFNHPIT 271

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR-- 411
           ++  N+ ++ R+ A +     +  ++IGT +     +    L L+I+DE+H   ++Q   
Sbjct: 272 VLHSNLNESERQIAWQLAKENKVKMVIGTRSAVFTPLP--NLGLIIIDEEHDSSLKQMEG 329

Query: 412 LKLTQKATA---PH-----VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           ++ + + TA    H     ++L TATP   T+        ++ ++T K A   P+   +I
Sbjct: 330 VRYSARDTALMRAHLANIPIILGTATPSLETIHNCKQKKYNLLRLTHKAASTTPLHYQLI 389


>gi|66825831|ref|XP_646270.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|74897412|sp|Q55D61|IF4A_DICDI RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=ATP-dependent RNA helicase tifA
 gi|60474009|gb|EAL71946.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 405

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 119/291 (40%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I     VE      Q +I++P   LAQQ  +     ++   I V 
Sbjct: 73  IAQAQSGTGKTATFSIGALQCVEVNVRSPQVLILSPTRELAQQIQKVALALSEFMNIQVH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G    +   K LE       HI+ GT     D I    L        IL   DE   
Sbjct: 133 ACVGGKNLSDDVKKLET----GVHIVSGTPGRVLDMITRKSLPTRHIKMMILDEADEMLS 188

Query: 406 FGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G QQ++    +       ++L++AT       LT     D+  +TEK    KP++   I
Sbjct: 189 LGFQQQINDVYRYLPNGTQIVLVSAT-------LTQ----DVVSMTEKFM-TKPVR---I 233

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  ++ +K      +K  W    + +  +S          N +  V++       
Sbjct: 234 LLKRDELTLDGIKQFFVSVEKEDWKFGTLCDIYDSLTITQAVIFCNTKKKVDQLTEQMRD 293

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              ++A +HG M   ++E ++ SF++G  ++LI T ++  GIDV   S++I
Sbjct: 294 ANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVI 344


>gi|307288890|ref|ZP_07568863.1| primosomal protein [Enterococcus faecalis TX0109]
 gi|306500162|gb|EFM69506.1| primosomal protein [Enterococcus faecalis TX0109]
 gi|315164417|gb|EFU08434.1| primosomal protein [Enterococcus faecalis TX1302]
          Length = 810

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 405


>gi|260770838|ref|ZP_05879767.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio furnissii CIP 102972]
 gi|260614075|gb|EEX39265.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio furnissii CIP 102972]
          Length = 733

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 94/210 (44%), Gaps = 24/210 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    SQ+     +L G  GSGKT V L  +   +EAG QA+++ P IG
Sbjct: 198 PKLNQEQAIA-IASINSQRGFGCYLLHGVTGSGKTEVYLNLIKPVLEAGKQALVLVPEIG 256

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q    F K++T    + VE+I   +    R  A        A I+IGT +       
Sbjct: 257 LTPQTINRFRKRFT----VPVEVIHSGLNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 310

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           +  L ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 311 FADLGIIIVDEEHDASYKQQDSLRYHARDVAVMRANLEQVPIVLGSATPALETLHNALTG 370

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEV 471
                ++T++ AG     T +   NR+ +V
Sbjct: 371 KYHHLQLTQR-AG-----TALPTTNRVLDV 394


>gi|167854823|ref|ZP_02477600.1| primosomal protein N' [Haemophilus parasuis 29755]
 gi|167854002|gb|EDS25239.1| primosomal protein N' [Haemophilus parasuis 29755]
          Length = 737

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 106/478 (22%), Positives = 191/478 (39%), Gaps = 105/478 (21%)

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS----QKNRMLRI 297
           L  K + +++ IP NV+    Q+ L   P   T+++ +  K     +S    Q+     +
Sbjct: 167 LFEKGYLEKLEIPFNVQS--WQEKLGEQPICNTQNRLTLNKQQTLVVSRLHYQQGFGAFL 224

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIIT 356
           L G  GSGKT V L  +   ++ G Q +++ P IG+  Q     I+++     + ++ + 
Sbjct: 225 LNGVTGSGKTEVYLQVIEEVLKRGEQVLVLVPEIGLTPQT----IQRFQARFNVEIDALH 280

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH----------R 405
            ++    R  A  R  +G++ I+IGT  ALF    Q+ +L L+I+DE+H          R
Sbjct: 281 SHLNDTQRLNAWLRAKNGESAIVIGTRSALF---TQFQQLGLIIIDEEHDGSFKQQDGWR 337

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           +  +    L  K     ++L +ATP   +L     G     ++T +    +  K  +I +
Sbjct: 338 YHARDLAVLRAKNNNIPIILGSATPSFESLQNVQNGKFIELQLTARAGNAQFSKQTLIDL 397

Query: 466 NR-------IDEVIERLKVVLSEGKKAY------------------WI--CPQIEEKKES 498
            +        ++++  ++  L +G +                    WI  CP  ++    
Sbjct: 398 KKQRIYSGLSEKLLAMMQSHLEKGNQVMLFLNRRGFAPVLLCHECGWIADCPSCDKPFTY 457

Query: 499 NFRSVVERFNSLHE---------HFTSSIAIIHG-----------------RMSDIDKES 532
           + +  V R +             H  S   I  G                  ++ ID++S
Sbjct: 458 HQKQRVLRCHHCASQKAIPRQCGHCGSVNLITTGIGTEQLEQVLAQRFPQYSITRIDRDS 517

Query: 533 V---------MDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHFGL 573
                     +   + G  ++LI T ++           V I  VD+S+   +      L
Sbjct: 518 TARKGSLEQHLAEIQAGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSSLFSTDYRAEERL 577

Query: 574 AQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL-IAEEDLKQRK 629
           AQL+ Q+ GR GR E+    +L  H P     +  L+ L N  DG+L  A + L  RK
Sbjct: 578 AQLYVQVSGRAGRAEKQGEVVLQTHYP----DHPLLTSLLN--DGYLAFASQALAMRK 629


>gi|2500527|sp|Q61656|DDX5_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box RNA helicase DEAD1; Short=mDEAD1; AltName:
           Full=DEAD box protein 5; AltName: Full=RNA helicase p68
 gi|51263|emb|CAA46581.1| p68 RNA helicase [Mus musculus]
          Length = 614

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 140 TGSGKTLSYLLPAIVHINHHPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKST 199

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 200 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  +  ++G +++S      A
Sbjct: 256 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------A 309

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + +++I  ++ ++SE           +E K   F     R + L 
Sbjct: 310 NHNILQIVDVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELT 358

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 359 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 418

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 419 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 461


>gi|256958402|ref|ZP_05562573.1| primosomal protein n [Enterococcus faecalis DS5]
 gi|257078287|ref|ZP_05572648.1| primosomal protein n [Enterococcus faecalis JH1]
 gi|294779978|ref|ZP_06745358.1| primosomal protein N' [Enterococcus faecalis PC1.1]
 gi|307270560|ref|ZP_07551858.1| primosomal protein [Enterococcus faecalis TX4248]
 gi|256948898|gb|EEU65530.1| primosomal protein n [Enterococcus faecalis DS5]
 gi|256986317|gb|EEU73619.1| primosomal protein n [Enterococcus faecalis JH1]
 gi|294452959|gb|EFG21381.1| primosomal protein N' [Enterococcus faecalis PC1.1]
 gi|306513141|gb|EFM81775.1| primosomal protein [Enterococcus faecalis TX4248]
 gi|315034826|gb|EFT46758.1| primosomal protein [Enterococcus faecalis TX0027]
 gi|315146581|gb|EFT90597.1| primosomal protein [Enterococcus faecalis TX4244]
 gi|329576777|gb|EGG58270.1| primosomal protein [Enterococcus faecalis TX1467]
          Length = 810

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 405


>gi|256761050|ref|ZP_05501630.1| primosomal protein n [Enterococcus faecalis T3]
 gi|256682301|gb|EEU21996.1| primosomal protein n [Enterococcus faecalis T3]
          Length = 797

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 250 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 309

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 310 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 365

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 366 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 392


>gi|255974263|ref|ZP_05424849.1| primosomal protein n [Enterococcus faecalis T2]
 gi|255967135|gb|EET97757.1| primosomal protein n [Enterococcus faecalis T2]
          Length = 797

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 250 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 309

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 310 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 365

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 366 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 392


>gi|288947725|ref|YP_003445108.1| ATP-dependent DNA helicase, RecQ family [Allochromatium vinosum DSM
           180]
 gi|288898241|gb|ADC64076.1| ATP-dependent DNA helicase, RecQ family [Allochromatium vinosum DSM
           180]
          Length = 1715

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 151/385 (39%), Gaps = 55/385 (14%)

Query: 302 VGSGKTLV-ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G GK+L   L A+A     G   V+++P+  L +     +             + G + 
Sbjct: 318 TGGGKSLCFQLPALARYERTGALTVVISPLQSLMKDQ---VDNLIARGLTCAGYLNGMLT 374

Query: 361 QAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFG----- 407
              RR  L+R+  G   +I           F  ++ + ++   I DE H   ++G     
Sbjct: 375 PIERRAMLDRLRLGDLGLIFVAPEQFRSTAFAQALSHREIAAWIFDEAHCLSKWGHDFRP 434

Query: 408 ----VQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKP 457
               V + +K TQK     V   TAT  P  +          LG +++ ++    +    
Sbjct: 435 DYLYVSKFIKATQKDRCSPVFGFTATAKPDVVDDIAAHFRERLG-LELDRLEGGVSRDNL 493

Query: 458 IKTV-IIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +  V  +P   ++ EV+ RLK  L E   A   C + +  +E+             E  T
Sbjct: 494 VYEVHAVPAQAKLGEVLRRLKEALREEGGAIIFCARQKTAQETA------------EFLT 541

Query: 516 SS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
            +    A  HG +    K +V + F  G  +++ AT    +G+D  D  ++I  +     
Sbjct: 542 QAGIDCAYFHGGLDSDIKRAVQEDFIAGRRRVIAATNAFGMGVDKPDVRLVIHLDTPG-S 600

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTEDGFL--IAEEDLKQ 627
           L    Q  GR GR +E + C+LLY      +  N   R  + +N     L  I   + K 
Sbjct: 601 LENYIQEAGRAGRDQEPAQCVLLYDDADLDIQFNLLKRSRLSQNDIRAILKAIRAIERKD 660

Query: 628 RKEGEILGIKQSGMPKFLIAQPELH 652
           R EGE+  +  +G  + L+  PE H
Sbjct: 661 RSEGEV--VVTTG--EILLETPESH 681


>gi|227517268|ref|ZP_03947317.1| primosomal replication protein n [Enterococcus faecalis TX0104]
 gi|227075275|gb|EEI13238.1| primosomal replication protein n [Enterococcus faecalis TX0104]
          Length = 810

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 405


>gi|156554534|ref|XP_001605420.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 775

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 147/348 (42%), Gaps = 49/348 (14%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  ++     +          G   +++AP   LAQQ     + + 
Sbjct: 151 MVGIAQ--TGSGKTLAYILPATVHINNQPRLSRGDGPIVLVLAPTRELAQQIQSVARDFG 208

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIV 400
            ++ I    I G  P+  + + LER       I I T       L + +    +   +++
Sbjct: 209 SSSCIRNTCIFGGSPKGPQARDLER----GVEICIATPGRLIDFLERGTTNLRRCTYLVL 264

Query: 401 DEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKIT 449
           DE  R     F  Q R  + Q      VL+ +AT  P+ +       LT    I+I  + 
Sbjct: 265 DEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT-WPKEVQALAEDFLTDYIQINIGSLN 323

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE-----GKKAYWICPQIEEKKESNFRSVV 504
              A    I+  II I +  E   +L V+L E     G K       +E KK+     V 
Sbjct: 324 L--AANHNIRQ-IIEICQEHEKENKLAVLLREIGCERGNKTIIF---VETKKK-----VD 372

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   ++  +   +IAI HG  S  +++ V+  F+NG   +L+AT V   G+DV D   ++
Sbjct: 373 DITKAIKRNGWPAIAI-HGDKSQPERDYVLSEFRNGKTAILVATDVAARGLDVEDVKYVV 431

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             +  +     +H++ GR GR +   +    + P  ++ +   +SVL+
Sbjct: 432 NFDYPNSSEDYIHRI-GRTGRCQSAGTAYAYFTPNNARQAKELISVLE 478


>gi|119505533|ref|ZP_01627605.1| primosome assembly protein PriA [marine gamma proteobacterium
           HTCC2080]
 gi|119458642|gb|EAW39745.1| primosome assembly protein PriA [marine gamma proteobacterium
           HTCC2080]
          Length = 735

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 106/235 (45%), Gaps = 30/235 (12%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P      Q  AI  I   + + +    +L+G  GSGKT V L A+AAA+    Q +++ P
Sbjct: 199 PLPANNEQSLAITHINASLGEFS--CHLLEGVTGSGKTEVYLQAIAAALARQEQTLVLIP 256

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            IG+  Q     ++++ +     +  +   +  A R +  +    GQA IIIGT  A+F 
Sbjct: 257 EIGLTPQ----LVRRFNERFDAPIVTLHSGLGNAERDRNWQAARSGQAAIIIGTRSAVFA 312

Query: 388 DSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATPIPRTLV 436
             +      L+IVDE+H   + Q+           +K  Q +  P ++L +ATP   ++ 
Sbjct: 313 PMLTPG---LIIVDEEHDVSLSQQDGLRYSARDVAVKRAQLSGCP-IVLGSATPSLESMA 368

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRI-------DEVIERLKVVLSEGKK 484
             +       ++T++ AG  P    I+ I  +        ++  ++  VLS G++
Sbjct: 369 NATNARYRWHRLTQRAAGASPPTKHIVDIRGLALRAGLSPQLQSKMTEVLSRGEQ 423


>gi|90023351|ref|YP_529178.1| putative ATP-dependent RNA helicase [Saccharophagus degradans 2-40]
 gi|89952951|gb|ABD82966.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 436

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 150/362 (41%), Gaps = 51/362 (14%)

Query: 263 QKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--- 318
           QK L  + F+ PT  Q   I  +L   + K+ M+       GSGKT   L+ M       
Sbjct: 13  QKALDKLTFTKPTDVQVQTIPAVL---AGKDIMV---SAKTGSGKTAAFLLPMLHKFLND 66

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR----RKALERI 371
                  +A+I+ P   LA Q  +  +++   TQI V +I G     H+    RK  E +
Sbjct: 67  PRPNTSTRALILLPTRELALQTVKAFEQFAGYTQIKVGLIMGGEAYKHQVATVRKNPEVL 126

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAP---HVLL 425
                 ++     +   ++ +  L  +++DE  R    G Q+ + L   A        LL
Sbjct: 127 VATPGRLV---EHIKNGNVDFSDLEFLVLDESDRMLDMGFQENM-LAIAAVCNEERQNLL 182

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI-----IPINRI----DEVIERLK 476
            +AT       L   G   I+ + + P  R  + +       I   R+    D   E+L 
Sbjct: 183 FSAT-------LKHKGIGGITGLLQDPV-RIQVDSAKEGHSNITQQRVFADDDSHKEKLV 234

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           V L   + A  +      + +    S + R N L   +      IHG ++  D++ VM+ 
Sbjct: 235 VKLIAEEDAQRVIVFCNTRLQCQKVSNILRANKLVSEY------IHGEVTQSDRKQVMNR 288

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G  ++L+AT V   G+D+ D  ++I  +A   G   +H++ GR GR ++    I L 
Sbjct: 289 FIDGKIRVLVATDVAARGLDIKDVDLVINFSAAFTGDEHVHRV-GRTGRSDKTGLAITLI 347

Query: 597 HP 598
            P
Sbjct: 348 SP 349


>gi|296201830|ref|XP_002748194.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 1
           [Callithrix jacchus]
          Length = 614

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 140 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKST 199

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 200 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  +  ++G +++S      A
Sbjct: 256 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------A 309

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + +++I  ++ ++SE           +E K   F     R + L 
Sbjct: 310 NHNILQIVDVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELT 358

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 359 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 418

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 419 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 461


>gi|239989321|ref|ZP_04709985.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           11379]
          Length = 527

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 129/318 (40%), Gaps = 33/318 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  +   A+++ P   LAQQ  + +  Y ++ ++ +
Sbjct: 126 RGRTGSGKTLAFGLALLARTAGRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRL 185

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFG 407
             + G M    +  AL     G A +++ T    +D I+       ++ + ++DE     
Sbjct: 186 ATVVGGMSIGRQASAL----RGGAEVVVATPGRLKDLIERRDCKLDRVTVTVLDEAD--- 238

Query: 408 VQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                ++      P V  LL    P  + ++ ++  D ++  +      + P+   + P 
Sbjct: 239 -----QMADMGFMPQVTELLDQVNPDGQRMLFSATLDRNVDLLVRTYL-KDPVVHSVDPA 292

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAI 520
                 +E   V+  +G   Y    +I  +        + +  V++      H     A 
Sbjct: 293 AGAVTTMEH-HVLYVQGADKYATTTEIAARDGRVIMFLDTKHAVDKLTDHLLHSGVRAAA 351

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG  S   +   +D FK G   +L+AT V   GI V +  +++  +        LH+  
Sbjct: 352 LHGGKSQPQRTRTLDRFKTGQVTVLVATNVAARGIHVDNLDLVVNVDPPTDHKDYLHR-G 410

Query: 581 GRVGRGEEISSCILLYHP 598
           GR  R  E  S + L  P
Sbjct: 411 GRTARAGESGSVVTLVLP 428


>gi|74149390|dbj|BAE22450.1| unnamed protein product [Mus musculus]
          Length = 615

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 153/396 (38%), Gaps = 65/396 (16%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E   P NV   IA++        PT  Q       L  +     M+ + Q   GSGKTL 
Sbjct: 98  EANFPANVMDVIARQNFT----EPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLS 147

Query: 310 ALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L+     +          G   +++AP   LAQQ  +   +Y +  ++    I G  P+
Sbjct: 148 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 207

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ---- 409
             + + LER       I I T     D ++  K  L     +++DE  R    G +    
Sbjct: 208 GPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEGDRMLDMGFEPQIR 263

Query: 410 --------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                    R  L   AT P  +   A    +  +  ++G +++S      A    ++ V
Sbjct: 264 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------ANHNILQIV 317

Query: 462 II--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517
            +   + + +++I  ++ ++SE           +E K   F     R + L         
Sbjct: 318 DVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELTRKMRRDGW 366

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  +  +     +
Sbjct: 367 PAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYI 426

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 427 HRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 461


>gi|291406391|ref|XP_002719530.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 3
           [Oryctolagus cuniculus]
          Length = 614

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 153/396 (38%), Gaps = 65/396 (16%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E   P NV   IA++        PT  Q       L  +     M+ + Q   GSGKTL 
Sbjct: 98  EANFPANVMDVIARQNFT----EPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLS 147

Query: 310 ALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L+     +          G   +++AP   LAQQ  +   +Y +  ++    I G  P+
Sbjct: 148 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 207

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ---- 409
             + + LER       I I T     D ++  K  L     +++DE  R    G +    
Sbjct: 208 GPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIR 263

Query: 410 --------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                    R  L   AT P  +   A    +  +  ++G +++S      A    ++ V
Sbjct: 264 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------ANHNILQIV 317

Query: 462 II--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517
            +   + + +++I  ++ ++SE           +E K   F     R + L         
Sbjct: 318 DVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELTRKMRRDGW 366

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  +  +     +
Sbjct: 367 PAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYI 426

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 427 HRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 461


>gi|261339970|ref|ZP_05967828.1| ATP-independent RNA helicase DbpA [Enterobacter cancerogenus ATCC
           35316]
 gi|288317887|gb|EFC56825.1| ATP-independent RNA helicase DbpA [Enterobacter cancerogenus ATCC
           35316]
          Length = 457

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 150/350 (42%), Gaps = 62/350 (17%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           T  Q +A+  IL+      R +R+ Q   GSGKT    + +   ++AG    Q++++ P 
Sbjct: 27  TPVQAAALPAILE-----GRDVRV-QAKTGSGKTAAFGLGLLQRIDAGLFQTQSLVLCPT 80

Query: 331 GILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             LA Q       + ++  NT+I+   + G  P   +R +L+       HII+ T     
Sbjct: 81  RELADQVAGELRRLARFLPNTKILT--LCGGQPFGAQRDSLQH----APHIIVATPGRLL 134

Query: 388 DSIQYYKL------ILVI--------------VDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           D +Q   +       LV+              +DE  RF    R  L   AT P  +   
Sbjct: 135 DHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSATWPEAIAAI 194

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           +  + +   LT    I+I  +   PA    I+     +++  + I  L+ VLS+ K A  
Sbjct: 195 SGRV-QNAPLT----IEIDTVDALPA----IEQQFFEVSQKGK-IALLQKVLSQHKPASC 244

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +   +    + + +SV +  N+  +   S    +HG +   D++  +  F NG+ ++L+A
Sbjct: 245 V---VFCNTKKDCQSVCDALNAAGQSALS----LHGDLEQRDRDQTLVRFANGSARVLVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
           T V   G+D+   S+ ++ N E     ++H  R GR  R    G  IS C
Sbjct: 298 TDVAARGLDI--KSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|205364353|gb|ACI04543.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Rattus norvegicus]
          Length = 614

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 140 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKST 199

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 200 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  +  ++G +++S      A
Sbjct: 256 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------A 309

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + +++I  ++ ++SE           +E K   F     R + L 
Sbjct: 310 NHNILQIVDVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELT 358

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 359 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 418

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 419 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 461


>gi|254168485|ref|ZP_04875329.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
           boonei T469]
 gi|197622540|gb|EDY35111.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
           boonei T469]
          Length = 694

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 168/402 (41%), Gaps = 79/402 (19%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           QE AIK +    S KN ++ I      SGKTL+  IA+  A + G ++V + P+  LA +
Sbjct: 28  QEEAIKKLF---SGKNLVVAI---PTASGKTLIGYIAILRAFKMGLKSVYIVPLRALAME 81

Query: 337 HYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-YK 394
            YE ++++ +   ++ + +   + P  + +     IA  +        ++ +  ++Y Y 
Sbjct: 82  KYEELRRFEKFGMKVALAMGDYDSPAGYLKYYDVVIATSEK-----MDSILRHDLEYAYN 136

Query: 395 LILVIVDEQHRFGVQQR--------LKLTQKATAPHVLLMTAT----------------- 429
           L +VIVDE H  G   R         K+        ++ ++AT                 
Sbjct: 137 LGVVIVDEVHLLGEASRGPTLEIVISKIRDVNDEAQIIALSATINNSQEIAEWLNGEHVY 196

Query: 430 ----PIP--------RTLVLTSLGDIDI--SKITEKPAGRKPIK---TVIIPINR----- 467
               P+P         TL+      ++I    I      R+ I+    V+I +NR     
Sbjct: 197 SEFRPVPLRLGVYYDDTLLFEDGEKVEIKHDAINIGNLVRRSIELGGQVLIFVNRRKSAE 256

Query: 468 --IDEVIERLKVVLSEGKKA--YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
              +++  R++  LSE  K+  Y +   I +++ + +    ER   L  H    +A  H 
Sbjct: 257 SLAEKLRRRVEGYLSEEDKSELYALADSIMDEEYTIYS---ERIAKLIRH---GVAFHHA 310

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH------ 577
            +S+  +  V  +FKN   K+++AT  +  GI++   ++I+ +   + G + ++      
Sbjct: 311 GLSNRHRSIVERAFKNKWLKVIVATPTLAAGINLPSRTVIVRDVTRYDGFSSVYIPVMEV 370

Query: 578 -QLRGRVGRG--EEISSCILLYHPPLSKNSYTRLSVLKNTED 616
            Q+ GR GR   ++    I+          Y  + +   TED
Sbjct: 371 KQMLGRAGRPKYDKYGEGIIYARSEKRAQDYMEMYIRGETED 412


>gi|39972035|ref|XP_367408.1| hypothetical protein MGG_07333 [Magnaporthe oryzae 70-15]
 gi|152013486|sp|A4RIF1|DBP5_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP5
 gi|145019844|gb|EDK04072.1| hypothetical protein MGG_07333 [Magnaporthe oryzae 70-15]
          Length = 504

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 163/396 (41%), Gaps = 73/396 (18%)

Query: 250 EIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E+G+P  + +G +A    +     P+K Q  A+  +L   S   R + I Q   G+GKT 
Sbjct: 100 ELGLPQGIIDGLLAMNFKK-----PSKIQARALPLML---SNPPRNM-IAQSQSGTGKTG 150

Query: 309 VALIAMAAAVEAGG----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
             ++ + + V+       QA+ +AP   LA+Q    I       Q I +  TG +  A  
Sbjct: 151 AFVVTILSRVDFNQPNQPQALALAPSRELARQIQSVI-------QSIGQFCTGLVVDAAI 203

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A+ R    +A++++GT     D I+       +L L++VDE      QQ L   Q   
Sbjct: 204 PGAISRETGVKANVVVGTPGTVMDLIRRRQFDVSQLKLLVVDEADNMLDQQGLG-EQCVR 262

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
             ++L  T     +TL+ ++     +    EK A             + +++  R + + 
Sbjct: 263 VKNMLPKTI----QTLLFSATFPDHVKSYAEKFA------------PQANQMKLRQQELT 306

Query: 480 SEG-KKAYWICPQIEEKKES-----------------NFRSVVERFNSLHEHFTSSIAII 521
            +G  + Y  CP ++EK E                    R   +      E     ++ +
Sbjct: 307 VKGISQMYMDCPSLKEKYEVLCKLYGLMTIGSSVIFVKTRESADEIQRRMEADGHKVSAL 366

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ------ 575
           HG     +++ ++D F++G  K+LI T V+  GIDV   S++I  +    G         
Sbjct: 367 HGAFQGQERDQLLDDFRSGKSKVLITTNVLARGIDVSSVSMVINYDIPMKGPGDQSPDAE 426

Query: 576 --LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
             LH++ GR GR   +   I   H    + S+T LS
Sbjct: 427 TYLHRI-GRTGRFGRVGVSISFVH---DRKSFTALS 458


>gi|50550293|ref|XP_502619.1| YALI0D09449p [Yarrowia lipolytica]
 gi|74659944|sp|Q6C9P3|DBP3_YARLI RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49648487|emb|CAG80807.1| YALI0D09449p [Yarrowia lipolytica]
          Length = 532

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 134/326 (41%), Gaps = 52/326 (15%)

Query: 301 DVGSGKTLVALIAMAAAV--EAGGQAV---IMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           + GSGKT    +     V   +GG+ V   +++P   LA Q Y+ IK+      +    +
Sbjct: 169 ETGSGKTFTFAVPALEHVLSTSGGKGVRVLVVSPTRELAMQIYDNIKELCDVVGLHAVCV 228

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---G 407
            G +P+  +R  L+R     A  +I T     D     S    K+  +++DE  R    G
Sbjct: 229 YGGVPKEQQRSDLKR-----ASFVIATPGRLCDLIDEGSCDLSKVSYLVLDEADRMLEKG 283

Query: 408 VQQRLKLTQKATAP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI-- 462
            ++ +K    +T P     ++ +AT  P           ++ K+ E    + P K +I  
Sbjct: 284 FEEDIKKIIGSTRPTGRQTVMFSATWPP-----------EVRKLAEGFM-KTPTKVMIGE 331

Query: 463 ---IPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV--------ERFNSL 510
              +  N RI + +E L     EG+    +   + +    +F+ ++         R  + 
Sbjct: 332 RDELAANKRITQSVEVLDPRAKEGR----LLDLLRQYANDDFKILIFALYKKEATRVENT 387

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  +A IHG +S   +   +D FK G   +L+AT V   G+D+ +  ++I      
Sbjct: 388 LTRRGYGVAAIHGDLSQQQRTKALDEFKKGEKNILLATDVAARGLDIPNVKLVINLTFPL 447

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY 596
                +H++ GR GR  +    I L+
Sbjct: 448 TVEDYVHRI-GRTGRAGKTGQAITLF 472


>gi|301169044|emb|CBW28641.1| Primosome factor n' (replication factor Y) [Haemophilus influenzae
           10810]
          Length = 730

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/389 (20%), Positives = 157/389 (40%), Gaps = 94/389 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +++G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 222 LLDGVTGSGKTEIYLQYIEEILKSGKQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 277

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
             N+    R    +R   GQ+ I+IGT  ALF    Q+  L  +I+DE+     +Q+   
Sbjct: 278 HSNLTDTQRLYVWDRARSGQSAIVIGTRSALF---TQFSNLGAIILDEEQDASYKQQDSW 334

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                   + L QK     VL+ +ATP   ++     G      ++++      ++  ++
Sbjct: 335 RYHARDLAIVLAQKLNIS-VLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVV 393

Query: 464 PINRID-------EVIERLKVVLSEGKKAY------------------WI--CPQIEEKK 496
            +   +        ++ER+KV L +G +                    WI  CP  E+  
Sbjct: 394 DLKNQNIQNGLSKPLLERMKVHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPY 453

Query: 497 ESNFRSVVERFN----------------SLH--------EHFTSSIAII--HGRMSDIDK 530
             +    V R +                S H        E    ++  +  H  ++ ID+
Sbjct: 454 TYHQHQNVLRCHHCGAQKTIPRQCGDCGSTHLVTTGLGTEQLEETLKTLFPHYSVARIDR 513

Query: 531 ESV---------MDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHF 571
           +S          ++  + G  ++LI T ++           V +  VD+++  ++     
Sbjct: 514 DSTACKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNVDSALFSLDFRAEE 573

Query: 572 GLAQLH-QLRGRVGRGEEISSCILLYHPP 599
            LAQL+ Q+ GR GR ++    +L  H P
Sbjct: 574 RLAQLYIQVAGRAGRADKQGEVVLQTHYP 602


>gi|257417252|ref|ZP_05594246.1| primosomal protein n [Enterococcus faecalis AR01/DG]
 gi|257159080|gb|EEU89040.1| primosomal protein n [Enterococcus faecalis ARO1/DG]
          Length = 810

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 405


>gi|300861573|ref|ZP_07107657.1| primosomal protein N' [Enterococcus faecalis TUSoD Ef11]
 gi|295114434|emb|CBL33071.1| replication restart DNA helicase PriA [Enterococcus sp. 7L76]
 gi|300849034|gb|EFK76787.1| primosomal protein N' [Enterococcus faecalis TUSoD Ef11]
 gi|315144144|gb|EFT88160.1| primosomal protein [Enterococcus faecalis TX2141]
          Length = 810

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 405


>gi|226324790|ref|ZP_03800308.1| hypothetical protein COPCOM_02576 [Coprococcus comes ATCC 27758]
 gi|225207238|gb|EEG89592.1| hypothetical protein COPCOM_02576 [Coprococcus comes ATCC 27758]
          Length = 101

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 38/65 (58%)

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL +L  + DGF IA EDLK R  G++ GI+QSG+  F I        LL+ A + +  I
Sbjct: 10  RLEILNKSNDGFFIANEDLKLRGPGDLFGIRQSGLMDFRIGDVFQDSELLKKAGEASGEI 69

Query: 667 LTQDP 671
           L +DP
Sbjct: 70  LREDP 74


>gi|254452872|ref|ZP_05066309.1| primosomal protein N [Octadecabacter antarcticus 238]
 gi|198267278|gb|EDY91548.1| primosomal protein N [Octadecabacter antarcticus 238]
          Length = 730

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 43/257 (16%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLR-----------ILQGDVGSGKTLVALIAMA 315
           R++P+ P    +   K++  D +   ++L            +L+G  GSGKT V L A+A
Sbjct: 180 RDVPY-PRLDPDRGGKELTNDQAVGAKILSEAVRSGTYGTTLLKGVTGSGKTEVYLEAVA 238

Query: 316 AAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             +  G QA+++ P I + A    EF+ +               +    RR+    +  G
Sbjct: 239 ECLRQGRQALVLLPEIALTA----EFLTRVEARFGCKPAEWHSGVTMTERRRCWRMVGQG 294

Query: 375 QAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------TAPHV 423
            A +I+G   ALF   + +  L LV+VDE+H    +Q   +   A           A  V
Sbjct: 295 DAQLIVGARSALF---LPFRDLGLVVVDEEHDTSYKQEDGVLYNARDMTVLRASLNAAQV 351

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           +L +ATP      L S  +++  K        +    V+  ++ ID  IE L        
Sbjct: 352 VLASATP-----SLESWANVEAGKYARVTLASRYGAAVLPKMSAIDMRIEDL-------P 399

Query: 484 KAYWICPQIEEKKESNF 500
              W+ P +++  E+  
Sbjct: 400 GGRWVSPTLQKMVEARL 416


>gi|144899404|emb|CAM76268.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 583

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 146/345 (42%), Gaps = 45/345 (13%)

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA----AAVEAGGQA-----VIMAP 329
           +++++ + D + + R L ++    GSGKT+   +A+A        A GQA     +I+AP
Sbjct: 23  TSVQNAVLDPAARGRDL-LVSAQTGSGKTVAFGLAIADTLLGDALAFGQASEPLALIVAP 81

Query: 330 IGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q   E    Y Q    +V  + G  P+A +R     +  G AHI++GT    +D
Sbjct: 82  TRELALQVQRELTWLYQQAGGQVVACVGGMDPRAEQRM----LGRG-AHIVVGTPGRLRD 136

Query: 389 SI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLV-L 437
            +        Q   ++L   DE    G ++ L+   +AT  +   LL +AT +P+ ++ L
Sbjct: 137 HLERGALRTGQLRAVVLDEADEMLDLGFREDLEFILEATPQNRRTLLFSAT-LPKLIIAL 195

Query: 438 TSLGDIDISKITEKPA--GRKPI--KTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQI 492
                 D  +I       G   I  + V +  N I+  V+  L+   S G  A   C   
Sbjct: 196 AKRYQRDSFRIAVSAGEHGHADIEYRAVRVAPNEIEHAVVNLLRYFESPG--ALVFC--- 250

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N R  V    ++ +    +   + G +   ++   + + ++G  ++ +AT V  
Sbjct: 251 ------NTRESVRHLQAILQERGFAAVALSGELGQNERNQSLQALRDGRARVCVATDVAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            GID+ + +++I       G    H+  GR GR       +LL  
Sbjct: 305 RGIDLPNINLVIHAELPQNGPTLQHR-SGRTGRAGRKGVSVLLVQ 348


>gi|319744243|gb|EFV96608.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           agalactiae ATCC 13813]
          Length = 419

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 135/313 (43%), Gaps = 27/313 (8%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +   ++      Q VI AP   LA Q Y+  K+  ++++  V ++   
Sbjct: 47  TGSGKTHTFLLPIFEKLDESSDDVQVVITAPSRELATQIYQATKQIAEHSEQEVRVVN-Y 105

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLK 413
           +    + + +E++   Q HI+IGT     D ++   L +      +VDE         L 
Sbjct: 106 VGGTDKLRQIEKLKVSQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTLDMGFLD 165

Query: 414 LTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
              K          +L+ +AT IP+ L         + K    P   K IKT  +  + I
Sbjct: 166 TVDKIAGSLPKDVQILVFSAT-IPQKLQPF------LKKYLTNPLMEK-IKTATVIADTI 217

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRM 525
           D  +   K    +  +   +   ++      F +  ER + LH + +S+   +A IHG +
Sbjct: 218 DNWLLSTK-GRDKNAQILELSKLMQPYLAMIFVNTKERADELHSYLSSNGLKVAKIHGGI 276

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +  +++ +M+  KN   + ++AT +   GID+   S +I +         +H++ GR GR
Sbjct: 277 APRERKRIMNQVKNLEFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGR 335

Query: 586 GEEISSCILLYHP 598
                + I LY P
Sbjct: 336 NGLSGTAITLYQP 348


>gi|312902125|ref|ZP_07761385.1| primosomal protein [Enterococcus faecalis TX0470]
 gi|311290789|gb|EFQ69345.1| primosomal protein [Enterococcus faecalis TX0470]
          Length = 810

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 405


>gi|257420428|ref|ZP_05597418.1| primosomal protein n [Enterococcus faecalis X98]
 gi|257162252|gb|EEU92212.1| primosomal protein n [Enterococcus faecalis X98]
 gi|315154710|gb|EFT98726.1| primosomal protein [Enterococcus faecalis TX0043]
          Length = 810

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 405


>gi|256962964|ref|ZP_05567135.1| primosomal protein n [Enterococcus faecalis HIP11704]
 gi|307273624|ref|ZP_07554852.1| primosomal protein [Enterococcus faecalis TX0855]
 gi|256953460|gb|EEU70092.1| primosomal protein n [Enterococcus faecalis HIP11704]
 gi|306509637|gb|EFM78679.1| primosomal protein [Enterococcus faecalis TX0855]
          Length = 810

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 405


>gi|163733504|ref|ZP_02140947.1| primosome assembly protein PriA [Roseobacter litoralis Och 149]
 gi|161393292|gb|EDQ17618.1| primosome assembly protein PriA [Roseobacter litoralis Och 149]
          Length = 745

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 19/146 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L A+AAA+ AG QA+++ P I + A    EF+ +  +         
Sbjct: 235 LLRGVTGSGKTEVYLEAVAAALTAGRQALVLLPEIALTA----EFLTRVQERFGARPAEW 290

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
                   RR+    +  G+A ++IG   ALF   + Y  L L++VDE+H    +Q   +
Sbjct: 291 HSGATMTERRRIFRMVGQGEAQLVIGARSALF---LPYQNLGLIVVDEEHDTSYKQEEGV 347

Query: 415 TQKA----------TAPHVLLMTATP 430
              A              V+L +ATP
Sbjct: 348 LYNARDMAVLRASICGAQVVLASATP 373


>gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 502

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 142/354 (40%), Gaps = 56/354 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGG---- 322
           PT  Q  AI  +L+ M        +     G+GKT      ++ L+   A   A      
Sbjct: 46  PTPIQAEAIPVVLKGMDV------MGAAQTGTGKTAGFSLPIIQLLMAHANSSASPARHP 99

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q    +K Y+++T +   ++ G M    +  AL     G   I+I 
Sbjct: 100 VRALILTPTRELADQVAANVKAYSRHTPLRSLVVFGGMDMTPQTAAL----RGGVEIVIA 155

Query: 382 THALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTAT 429
           T     D +Q   + L     +++DE  R         +Q+ + L  K     +   T +
Sbjct: 156 TPGRLLDHVQQKTINLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQRQNLMFSATFS 215

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV---VLSEGKKAY 486
           P  + L  T L D    ++    A  + +  +I    +++E  +R  V   +   G K  
Sbjct: 216 PEIKKLAATFLKDPVTIEVARSNATAENVTQIIY---KVEEEAKRDAVSFIIRERGLKQV 272

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +         SN +    R     E      + IHG  S  ++   ++ FKNGT ++L+
Sbjct: 273 IVF--------SNTKIGASRLARQLESEGVKASAIHGDKSQSERMQALEQFKNGTIEVLV 324

Query: 547 ATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           AT V   G+D+ +   +I      NAE +    +H++ GR GR       I L+
Sbjct: 325 ATDVAARGLDIAELPCVINFDLPYNAEDY----VHRI-GRTGRAGASGDAISLF 373


>gi|55562721|gb|AAH86320.1| Ddx5 protein [Mus musculus]
          Length = 648

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 173 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKST 232

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 233 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 288

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  +  ++G +++S      A
Sbjct: 289 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------A 342

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + +++I  ++ ++SE           +E K   F     R + L 
Sbjct: 343 NHNILQIVDVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELT 391

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 392 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 451

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 452 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 494


>gi|51556985|gb|AAU06262.1| DEAD box DNA helicase [Plasmodium falciparum]
          Length = 516

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 36/292 (12%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   L  Q  + IK + +N  I    + G +P+ ++   L++     A II+ T 
Sbjct: 204 GLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKK----GADIIVATP 259

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTAT-PIP 432
               D     +I   K I V++DE  R    G +++L+  +TQ      +L +TAT P  
Sbjct: 260 GRLLDFLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPEQ 319

Query: 433 RTLVLTSLGDIDISKI----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
              +       D  KI     E  A +   + VII        I+  K +L       W+
Sbjct: 320 VRKLAYDFCAYDPVKIQIGKNELTANKNIEQNVIIS-----SSIDMKKKLLD------WL 368

Query: 489 CPQIEEKKESNF----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
               E  K   F    R+       L  H  ++++I HG     +++ +++++K   C +
Sbjct: 369 KENYENNKILIFCDTKRNCDNLGKELRYHQYNALSI-HGDKQQRERDRILNNYKTDRCNI 427

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           L+AT V   G+D+ + S++I  +  +     +H++ GR GR  +    IL +
Sbjct: 428 LVATDVASRGLDIKNISVVINYDIPNTIEDYIHRI-GRTGRAGKKGKSILFF 478


>gi|307292142|ref|ZP_07572008.1| primosomal protein [Enterococcus faecalis TX0411]
 gi|306496795|gb|EFM66346.1| primosomal protein [Enterococcus faecalis TX0411]
          Length = 810

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 405


>gi|195552710|ref|XP_002076525.1| GD17585 [Drosophila simulans]
 gi|194202136|gb|EDX15712.1| GD17585 [Drosophila simulans]
          Length = 786

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 134/322 (41%), Gaps = 47/322 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   +  M   V    Q         +I+AP   L+ Q Y   KK+ +   + V 
Sbjct: 312 TGSGKTAAFIWPMLMHVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVV 371

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRF-- 406
              G   +  + KALE+     A II+ T     D ++       ++  +++DE  R   
Sbjct: 372 CCYGGGSKWEQSKALEQ----GAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFH 427

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPR--TLVLTSLGD-IDISKITEKPAGRKPIKT 460
            G + +++       P    L+ +AT   R   L    L D + I +     A +   ++
Sbjct: 428 MGFEPQVRSICNHVRPDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQS 487

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           V +   P+ + + ++  L   LSEG    ++  +++ +  SN   +++ +N L       
Sbjct: 488 VYVFPNPLQKWNWLLCHLVKFLSEGSVLIFVTKKVDAETVSN-NLLIKEYNCL------- 539

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA--- 574
             ++HG M   D+  V+  FK   C +L+AT V   G+D     I  I N  ++  A   
Sbjct: 540 --LLHGDMDQADRNKVITQFKRKECDILVATDVAARGLD-----IPHIRNVVNYDTARDI 592

Query: 575 QLHQLR-GRVGRGEEISSCILL 595
           + H  R GR GR  E  +   L
Sbjct: 593 ETHTHRIGRTGRAGEKGNAFTL 614


>gi|195588318|ref|XP_002083905.1| GD13105 [Drosophila simulans]
 gi|194195914|gb|EDX09490.1| GD13105 [Drosophila simulans]
          Length = 814

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 136/325 (41%), Gaps = 49/325 (15%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  NT +   
Sbjct: 200 TGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNT 259

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
            I G  P+  + + LER       I+I T     D     +    +   +++DE  R   
Sbjct: 260 CIFGGAPKGQQARDLER----GVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLD 315

Query: 407 -GVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            G + ++ K+ Q+      +LM +   P+ +       L +   ++I  ++   +    I
Sbjct: 316 MGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSL--SANHNI 373

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS- 517
             ++   +  +++++ +K++     +         E K   F    +R + +  + +   
Sbjct: 374 LQIVDVCDENEKLMKLIKLLTDISAE--------NETKTIIFVETKKRVDEITRNISRQG 425

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHF 571
                IHG  S  +++ V+ SF+NG   +L+AT V   G+DV D   +I      N+E +
Sbjct: 426 WRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDY 485

Query: 572 GLAQLHQLRGRVGRGEEISSCILLY 596
               +H++ GR GR     +   L+
Sbjct: 486 ----VHRI-GRTGRSNNTGTAYTLF 505


>gi|330819324|ref|YP_004348186.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
 gi|327371319|gb|AEA62674.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
          Length = 465

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 136/318 (42%), Gaps = 50/318 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ + ++A     QA+I+ P   LA Q  + I++  +  + I V
Sbjct: 49  IAQAKTGSGKTAAFSLALLSRLDARRFDVQAMILCPTRELADQVAQEIRRLARAEENIKV 108

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G  P   +  +LE   HG AHI++GT     D ++   L L     +++DE  R  
Sbjct: 109 LTLCGGTPMRPQAASLE---HG-AHIVVGTPGRIMDHLERGTLALGALNTLVLDEADRML 164

Query: 407 --------------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
                            +RL L   AT P  +    T + R      L D    K+ E+ 
Sbjct: 165 DMGFFDDIATVARQCPTERLTLLFSATYPEGI----TKLSRQF----LRDPKEIKLAEQH 216

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSL 510
             RK I+     +   DE +  +  +L+  + A  I  C       +   R +++  ++ 
Sbjct: 217 DARK-IRQRFYEVTE-DERLHAVGQLLNHYRPASTIAFC-----NTKQQCRDLLDVLSAQ 269

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             H  +    +HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +   
Sbjct: 270 GFHALA----LHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTP 325

Query: 571 FGLAQLHQLRGRVGRGEE 588
                +H++ GR GR ++
Sbjct: 326 DPEVHVHRI-GRTGRADQ 342


>gi|300023857|ref|YP_003756468.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525678|gb|ADJ24147.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 540

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 134/317 (42%), Gaps = 37/317 (11%)

Query: 302 VGSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            G+GKT   ++ M   +E G       +++I+AP   LA Q  +  +KY  N ++ V ++
Sbjct: 50  TGTGKTASFVLPMITRLETGRARARMPRSLILAPTRELAAQVAQSFEKYGTNHKLSVALL 109

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV-----IVDEQHRF---G 407
            G +    + K L+R       ++I T     D     +++L+     ++DE  R    G
Sbjct: 110 IGGVSMDDQVKKLDR----GVDVLIATPGRLLDHFGRGRVMLMGVEILVIDEADRMLDMG 165

Query: 408 VQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKI-TEKPAGR-KPIKTVII 463
               ++   K   P    L  +AT  P    L      D ++I   KPA   K I    +
Sbjct: 166 FIPDIEKICKLLPPRRQTLFFSATMPPEITRLVDQFLKDPTRIEVAKPATTAKTITQRFV 225

Query: 464 PINRIDEVIER--LKVVLSEG--KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
                ++  +R  L+ ++ +G  K A   C        +  R V   + SL +H  ++  
Sbjct: 226 YCQNGEDWAKREMLRELIRDGNVKNAIIFC--------NRKRDVAVLYKSLSKHGFNA-G 276

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG M    +   +D F+NG   LL A+ V   G+D+ D S +   +        +H++
Sbjct: 277 ELHGDMDQTSRTETLDKFRNGEIMLLAASDVAARGLDIPDVSHVFNFDLPWAADDYVHRI 336

Query: 580 RGRVGR-GEEISSCILL 595
            GR GR G E  S  L+
Sbjct: 337 -GRTGRAGREGHSASLV 352


>gi|198419625|ref|XP_002130533.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Ciona intestinalis]
          Length = 672

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/339 (20%), Positives = 129/339 (38%), Gaps = 58/339 (17%)

Query: 297 ILQGDVGSGKTL------VALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNT 348
           + Q   G+GKTL      V  + M    + G   + ++MAP   LA Q  +  +  +Q  
Sbjct: 131 VAQARTGTGKTLSFAIPLVEKLIMNRCKDYGRPPKVLVMAPTRELAIQVRKDFQDISQGL 190

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIV 400
             +   I G  P   +    ER   G   I++GT     D +Q   L        +L  V
Sbjct: 191 SSVC--IYGGTPYFQQ----ERSMRGGVDIVVGTPGRIMDHVQKGNLQLGSVEHVVLDEV 244

Query: 401 DEQHRFGVQQRLK-------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           D+    G   +++         ++   P  LL +AT  P           + S+   +P+
Sbjct: 245 DQMLDMGFAPKVEEILGYAYTEEREGPPQTLLFSATCPPWVR--------NTSRKYMRPS 296

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI--------------EEKKESN 499
               + T+   + R    +E L +      +A  I   +              + KK++N
Sbjct: 297 ETVHVDTIGKSLVRTATTVEHLAIRCQYSDRAECIGNVVQMYSGQHGRAMIFTDTKKDAN 356

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              V E              ++HG +    +E  + ++++GT + L+AT V   G+D+ +
Sbjct: 357 ELVVCEALQQQKAQ------VLHGDIEQRQREITLKAYRDGTVRCLVATNVAARGLDIPE 410

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      C+  Y P
Sbjct: 411 IDLVIQTSPPSDIDSYIHR-SGRTGRAGRTGVCVCFYKP 448


>gi|83313160|ref|YP_423424.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82948001|dbj|BAE52865.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 622

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 150/348 (43%), Gaps = 49/348 (14%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV-------ALIAMAAAVEAGGQ--AVI 326
           +  +A+++ + +     R L ++    GSGKT+         L+  A  +E   +  A+I
Sbjct: 56  TDPTAVQEAVLEPGAAGRDL-LVSAQTGSGKTVAYGLAIADTLLGDAFVLEPAAEPLALI 114

Query: 327 MAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +AP   LA Q H E    Y      +V  + G  P+A +R     +  G AHI++GT   
Sbjct: 115 VAPTRELALQVHRELTWLYEHAGARVVSCVGGMDPRAEQRM----LGQG-AHIVVGTPGR 169

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTL 435
            +D ++   L        +L   DE    G ++ L+   +AT      LL +AT +P  +
Sbjct: 170 LRDHLERGGLRINRLKAVVLDEADEMLDLGFREDLEFILEATPQERRTLLFSAT-LPHGI 228

Query: 436 VLTS------LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           V  +         I +S  T+  A  +  + V +  N I+  +  L +   E   A   C
Sbjct: 229 VAMAKRYQRNAWRIAVSAGTQGHADIE-YRAVRVAPNEIEHAVVNL-LRYFESPTAMVFC 286

Query: 490 PQIEEKKESNFRSVVERFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    N R  V    + L E   +++A+  G +   ++ + + + ++G  ++ +AT
Sbjct: 287 ---------NTRDSVRHLQAILLERGFAAVAL-SGELGQNERNNALQALRDGRARVCVAT 336

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILL 595
            V   GID+ +  ++I  +AE    AQ  Q R GR GR  +    +LL
Sbjct: 337 DVAARGIDLPNLGLVI--HAELPQNAQTLQHRSGRTGRAGKKGVSVLL 382


>gi|89092720|ref|ZP_01165673.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89083232|gb|EAR62451.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 427

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 123/287 (42%), Gaps = 23/287 (8%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++AP   LA Q  +   +Y ++  + V  + G +P  ++ K L+R       I++ T
Sbjct: 78  RALVLAPTRELAIQVADNTLEYGRDLGMRVISVYGGVPVENQIKRLKR----GTDILVAT 133

Query: 383 HA-----LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                  L Q +I   KL  +++DE  R      +   QK      ++  A    +TL+ 
Sbjct: 134 PGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQK------IMDYAADDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           T+  D  +  + E      P K  + P N   + I +    +  G+KA  +   I E K 
Sbjct: 188 TATADESVEVLAEFYLN-NPTKIKVTPRNSTAKQIRQFAYQVDYGQKADILSYLITEGKW 246

Query: 498 SN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F    +R + L ++      + A IHG  S  ++  +++ F  G   +L+AT V 
Sbjct: 247 GQTLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLHVLVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             G+D+     ++  +  +   A +H++ GR GR  E    + L  P
Sbjct: 307 ARGLDIESLPYVVNYDLPNQPEAYVHRI-GRTGRAGETGEAVSLVAP 352


>gi|315499759|ref|YP_004088562.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB
           48]
 gi|315417771|gb|ADU14411.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
           48]
          Length = 501

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 154/378 (40%), Gaps = 68/378 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI   L  +     +L I Q   G+GKT    + M   + +G       +A+
Sbjct: 24  TPTAIQEQAIPIALIGLD----VLGIAQ--TGTGKTAAFTLPMIEKLASGRSRARMPRAI 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E  +KY +  ++   ++ G +  A +   L++       ++I T   
Sbjct: 78  VLAPTRELADQVAEAFEKYAKYCKLNWALLIGGVSMADQVAKLDK----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPR 433
             D  +  K++L     ++VDE  R         +++  KLT              P  +
Sbjct: 134 LLDLFERSKVMLNGVQLMVVDEADRMLDMGFIPDIERIFKLT-------------PPSRQ 180

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL  ++    +I+++TE+   + P++  +      +E I +    +  G         + 
Sbjct: 181 TLFFSATMPPEITRLTEQ-FLKNPVRIEVSRPATTNENITQYVYRVPSGDSKL-----LA 234

Query: 494 EKKESNFRSVVERFN-------------------SLHEHFTSSIAIIHGRMSDIDKESVM 534
           + K    R+++ +                     SL  H  ++ A IHG +    +   +
Sbjct: 235 KAKRLALRTLIGQLEINNGIVFCNRKTDVDIVAKSLSVHGFNA-APIHGDLDQSLRMKTL 293

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           D+F++G  KLL+A+ V   G+D+   S +   +  H     +H++ GR GR        L
Sbjct: 294 DAFRSGELKLLVASDVAARGLDIPSVSHVFNFDVPHHADDYVHRI-GRTGRAGRTGEAYL 352

Query: 595 LYHPPLSKNSYTRLSVLK 612
           +  P   KN    L ++K
Sbjct: 353 ILAPNDEKNYDKVLKLIK 370


>gi|225569236|ref|ZP_03778261.1| hypothetical protein CLOHYLEM_05318 [Clostridium hylemonae DSM
           15053]
 gi|225162035|gb|EEG74654.1| hypothetical protein CLOHYLEM_05318 [Clostridium hylemonae DSM
           15053]
          Length = 742

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 19/182 (10%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           + Q++ +      TK Q + I     D  +  R   +L G  GSGKT V +  +   V+ 
Sbjct: 193 VRQRVKQRQEVEYTKEQRNVIDTFWGDYREGIRGTYLLYGVTGSGKTEVYMEMIHRVVQE 252

Query: 321 GGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           G QA+++ P I +  Q    F  ++       V I+   + Q  R   +ER+  G   ++
Sbjct: 253 GKQAIVLIPEIALTYQTVMRFYGRFGDR----VSILNSRLSQGERYDQMERVRSGAVDVM 308

Query: 380 IGTH-ALFQDSIQYYKLILVIVDEQHR--FGVQQRLKLTQKATA--------PHVLLMTA 428
           IG   ALF     +  L L+++DE+H   +  +Q  +   + TA          V+L +A
Sbjct: 309 IGPRSALF---TPFSDLGLIVLDEEHETTYKSEQVPRYHARETAIERAAIEGASVVLGSA 365

Query: 429 TP 430
           TP
Sbjct: 366 TP 367


>gi|297544787|ref|YP_003677089.1| primosomal protein N' [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842562|gb|ADH61078.1| primosomal protein N' [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 732

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 20/202 (9%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           + I R  P S T+ Q+ A++++ + +        +L G  GSGKT V L  +  A++ G 
Sbjct: 184 KDIERTKPLSLTEEQKRAVEEVKKSILTGTFDKYLLFGVTGSGKTEVYLQLIDEAIKIGK 243

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F+ ++       V +I   +    R     ++ +G   +++G
Sbjct: 244 SAIVLVPEISLTPQTIERFVSRFGNR----VAVIHSGLSPGERFDEWRKVKNGLVDVVVG 299

Query: 382 T-HALFQDSIQYYKLILVIVDEQHRFGVQQ---RLKLTQKATAPH-------VLLM-TAT 429
             +A+F     +  L L+I+DE+H    +Q   R K   K  A         VL+M +AT
Sbjct: 300 VRNAVFA---PFNNLGLIIIDEEHETTYKQSDLRPKYNAKEVAEKRCEIQKAVLVMASAT 356

Query: 430 PIPRTLVLTSLGDIDISKITEK 451
           P   T    + G+  + ++T++
Sbjct: 357 PSLETYYKANKGEYKLIRLTKR 378


>gi|256618120|ref|ZP_05474966.1| primosomal protein n [Enterococcus faecalis ATCC 4200]
 gi|256597647|gb|EEU16823.1| primosomal protein n [Enterococcus faecalis ATCC 4200]
 gi|315031810|gb|EFT43742.1| primosomal protein [Enterococcus faecalis TX0017]
          Length = 810

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 405


>gi|255013264|ref|ZP_05285390.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_7]
          Length = 426

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 146/354 (41%), Gaps = 68/354 (19%)

Query: 278 ESAIKDILQDMS-------QKNRMLRILQG-------DVGSGKTLVALIAMAAAVEAGG- 322
           E A+ D L DM+       Q+  +  IL+G         G+GKT   ++ +   +  G  
Sbjct: 9   EDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINELSKGCH 68

Query: 323 -----QAVIMAPIGILAQQHYEFIKKYT----QNTQIIVEIITGNMPQAHRRKALERIAH 373
                 AVIMAP   LAQQ  + I+ +T      + + V   T  +    +++ LE  A 
Sbjct: 69  PTDAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGAD 128

Query: 374 ------GQ--AHIIIGTHALFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPH 422
                 G+  +HI +GT       +   K+   ++DE  R    G    +    K   P+
Sbjct: 129 IVIATPGRLLSHIKLGT-------VDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPY 181

Query: 423 V--LLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
              ++ +AT  P  RTL  T L D +  KI                I+R  E I +   +
Sbjct: 182 CQTIMFSATMPPKIRTLAKTILKDPEEVKIA---------------ISRPPESIMQTAYI 226

Query: 479 LSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
             + +K   +     + +       S+ +  V+   S  +    ++A +H  +    +E 
Sbjct: 227 CYDPQKLKILQDLFTQSRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREE 286

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           VM  FK+G   +L+AT V+  GID+ D  +++  +  H     +H++ GR  RG
Sbjct: 287 VMKEFKSGHIDILVATDVVARGIDINDIKLVVNFDIPHDPEDYVHRI-GRTARG 339


>gi|229548019|ref|ZP_04436744.1| primosomal replication protein n [Enterococcus faecalis ATCC 29200]
 gi|257091367|ref|ZP_05585728.1| primosomal protein n [Enterococcus faecalis CH188]
 gi|307276654|ref|ZP_07557772.1| primosomal protein [Enterococcus faecalis TX2134]
 gi|312905431|ref|ZP_07764545.1| primosomal protein [Enterococcus faecalis TX0635]
 gi|229306895|gb|EEN72891.1| primosomal replication protein n [Enterococcus faecalis ATCC 29200]
 gi|257000179|gb|EEU86699.1| primosomal protein n [Enterococcus faecalis CH188]
 gi|306506764|gb|EFM75916.1| primosomal protein [Enterococcus faecalis TX2134]
 gi|310631160|gb|EFQ14443.1| primosomal protein [Enterococcus faecalis TX0635]
 gi|315161199|gb|EFU05216.1| primosomal protein [Enterococcus faecalis TX0645]
 gi|315167225|gb|EFU11242.1| primosomal protein [Enterococcus faecalis TX1341]
 gi|315577115|gb|EFU89306.1| primosomal protein [Enterococcus faecalis TX0630]
          Length = 810

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 405


>gi|255083352|ref|XP_002504662.1| predicted protein [Micromonas sp. RCC299]
 gi|226519930|gb|ACO65920.1| predicted protein [Micromonas sp. RCC299]
          Length = 462

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 136/337 (40%), Gaps = 40/337 (11%)

Query: 302 VGSGKT-------LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKT       L+ ++A         Q +++AP   LAQQ  +  +       +    
Sbjct: 94  TGSGKTMAFGLPALMQILAQPKCAPGSPQCLVLAPTRELAQQTAKVFEDAGTACGVRCVC 153

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR---F 406
           + G  P+  ++K +++   G   +I+ T    +D      ++  K+ ++++DE  R    
Sbjct: 154 VYGGAPKWEQKKLMQQ--GGGCAVIVATPGRLRDFMNDGDVKLDKVTMLVLDEADRMLDL 211

Query: 407 GVQQRLK-LTQKATAPHVLLMTATPIPRTL-VLTSLGDIDISKITEKPAGRKPIKTV--- 461
           G +  ++ +  K  A    +M +   P ++  L +    +  K+     G K   +V   
Sbjct: 212 GFEPEIREIAGKTRADRQTVMFSATWPTSIQGLAAEFMCNPVKVRIGAEGLKASHSVTQV 271

Query: 462 --IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TS 516
             ++  N  D  + R+      GKK           +   F    +    LHE+      
Sbjct: 272 VEVVEPNEKDAHLARVLKKYLGGKKPV--------PRTLVFALYKKECARLHENLRRQNW 323

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             A IHG MS  D+E  +++FK+G+  LLIAT V   G+D+     +I           +
Sbjct: 324 QAACIHGDMSQRDRELSVEAFKSGSSPLLIATDVAARGLDIKGVEYVINYTFPLTTEDYV 383

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           H++ GR GR  +      L H   +++   R   L N
Sbjct: 384 HRI-GRTGRAGQTG----LAHTFFTQHDKARAGELAN 415


>gi|197302410|ref|ZP_03167466.1| hypothetical protein RUMLAC_01138 [Ruminococcus lactaris ATCC
           29176]
 gi|197298531|gb|EDY33075.1| hypothetical protein RUMLAC_01138 [Ruminococcus lactaris ATCC
           29176]
          Length = 741

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 21/188 (11%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           R I F  T  QE  I+   +D     R   ++ G  GSGKT V +  +   VE G QA++
Sbjct: 201 RTITF--TSEQEQVIRGFREDYLAGKRKTYLIHGVTGSGKTEVYMEMIHTVVEHGRQAIV 258

Query: 327 MAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-A 384
           + P I +  Q    F +K+       V I+   +    R   + R   G+  ++IG   A
Sbjct: 259 LIPEIALTYQTVMRFYRKFGDR----VSIMNSRLSAGERYDQMMRAKRGEIDVMIGPRSA 314

Query: 385 LFQDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           LF     +  L LV++DE+H          R+  ++      K     V+L +ATP   +
Sbjct: 315 LF---TPFPNLGLVVIDEEHEPTYKSEQIPRYHARETAIQRAKEEDASVVLGSATPSMES 371

Query: 435 LVLTSLGD 442
           +     G+
Sbjct: 372 MYRARKGE 379


>gi|156938074|ref|YP_001435870.1| DEAD/DEAH box helicase [Ignicoccus hospitalis KIN4/I]
 gi|156567058|gb|ABU82463.1| DEAD/DEAH box helicase domain protein [Ignicoccus hospitalis
           KIN4/I]
          Length = 698

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/377 (21%), Positives = 159/377 (42%), Gaps = 73/377 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++    GSGKTLVA +A+  A++ G +AV + P+  LA + Y  +KK  +++++ + +  
Sbjct: 44  LVSAPTGSGKTLVAEMAIKNALDNGYKAVYLTPLRSLAFEKYASLKKIFKDSKVALSVGD 103

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH----ALFQDSIQYYKLI-LVIVDEQHRFGVQQ- 410
            + P+            G+A +++ T+    +L + +  + K +  V+VDE H  G ++ 
Sbjct: 104 YHAPEV-----------GEADVLVATYERMDSLLRHNSPWLKEVGTVVVDEVHYVGDEER 152

Query: 411 ---------RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK----- 456
                    RLKL  K     ++ ++AT +     L S  D ++     +P   +     
Sbjct: 153 GPTLEVVVTRLKLMGK----QIVALSAT-VGNPEDLASWLDAELVTHDWRPVKLEEGVMD 207

Query: 457 PIKTVIIPINRIDEVIERLKV--------VLSEGKKAYWICPQIEEK------------- 495
           P    ++  +R++EV E L           + EG+  Y+   +   +             
Sbjct: 208 PSSYEVLFEDRVEEVKEVLSDPGLDAALHYMREGQALYFASTRKRAENAAKKISKLLKPD 267

Query: 496 ---KESNFRSVVERFNSLHEHFTSSI----AIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              KE   R  +E    L E     +    A  H  +++  +  V ++F++G  K + AT
Sbjct: 268 KVTKEWAERVRIEVEGELGEVLAKMVERGAAFHHAGLTNEARLLVEEAFRSGAIKFVAAT 327

Query: 549 TVIEVGIDVVDASIII-------IENAEHFGLAQLHQLRGRVGR-GEEI-SSCILLYHPP 599
             +  G+++   +++I        E      +++  Q+ GR GR G ++  + +L+  P 
Sbjct: 328 PTLAAGVNLPARAVVIERYTRYTDEGEAPISVSEYKQMAGRAGRPGLDVKGTSVLVARPK 387

Query: 600 LSKNSYTRLSVLKNTED 616
                     VL   ED
Sbjct: 388 APPEEVYERYVLGQPED 404


>gi|91975034|ref|YP_567693.1| primosome assembly protein PriA [Rhodopseudomonas palustris BisB5]
 gi|91681490|gb|ABE37792.1| replication restart DNA helicase PriA [Rhodopseudomonas palustris
           BisB5]
          Length = 735

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 87/202 (43%), Gaps = 29/202 (14%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV------EGKIAQKILRNIPFSPTK 275
           +PAR RL   E+L+    LL  +    KE G+   V      EG +  + +   P +PT 
Sbjct: 137 TPARRRLI--EILSD--GLLHGKSDVAKEAGVSPGVIDGLVDEGTLHVEAMPREPAAPTP 192

Query: 276 SQESAIKDILQDMSQKNRMLR------------ILQGDVGSGKTLVALIAMAAAVEAGGQ 323
             + A  D   + ++    +R            +L G  GSGKT V   A+A  V  G Q
Sbjct: 193 DPDFAPADFSPEQARAAETMRELVKPGGGFQAALLDGVTGSGKTEVYFEAVAEVVRQGRQ 252

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   L  Q   F+ ++     +        +    R +    IA G+A +++G  
Sbjct: 253 CLILMPEIALTGQ---FLDRFALRFGVRPLEWHSELTPRTRARNWAAIAAGEAQVVVGAR 309

Query: 384 -ALFQDSIQYYKLILVIVDEQH 404
            ALF   + Y  L L+IVDE+H
Sbjct: 310 SALF---LPYADLGLIIVDEEH 328


>gi|307284850|ref|ZP_07565006.1| primosomal protein [Enterococcus faecalis TX0860]
 gi|306503109|gb|EFM72366.1| primosomal protein [Enterococcus faecalis TX0860]
          Length = 810

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 405


>gi|281346962|gb|EFB22546.1| hypothetical protein PANDA_001615 [Ailuropoda melanoleuca]
          Length = 710

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 136/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 151 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 210

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     +  I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 211 LSVAC-FYGGTSYQSQ----INHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 264

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTATPIP------RTLVLTSLG 441
                V Q L L               T     P  LL +AT  P      +  + +   
Sbjct: 265 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPPWVYKVAKKYMKSRYE 319

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 320 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 373

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 374 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 429

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 430 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 467


>gi|256840789|ref|ZP_05546297.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|298376614|ref|ZP_06986569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|301309869|ref|ZP_07215808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
 gi|256738061|gb|EEU51387.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|298266492|gb|EFI08150.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|300831443|gb|EFK62074.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
          Length = 426

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 146/354 (41%), Gaps = 68/354 (19%)

Query: 278 ESAIKDILQDMS-------QKNRMLRILQG-------DVGSGKTLVALIAMAAAVEAGG- 322
           E A+ D L DM+       Q+  +  IL+G         G+GKT   ++ +   +  G  
Sbjct: 9   EDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINELSKGCH 68

Query: 323 -----QAVIMAPIGILAQQHYEFIKKYT----QNTQIIVEIITGNMPQAHRRKALERIAH 373
                 AVIMAP   LAQQ  + I+ +T      + + V   T  +    +++ LE  A 
Sbjct: 69  PTDAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGAD 128

Query: 374 ------GQ--AHIIIGTHALFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPH 422
                 G+  +HI +GT       +   K+   ++DE  R    G    +    K   P+
Sbjct: 129 IVIATPGRLLSHIKLGT-------VDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPY 181

Query: 423 V--LLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
              ++ +AT  P  RTL  T L D +  KI                I+R  E I +   +
Sbjct: 182 CQTIMFSATMPPKIRTLAKTILKDPEEVKIA---------------ISRPPESIMQTAYI 226

Query: 479 LSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
             + +K   +     + +       S+ +  V+   S  +    ++A +H  +    +E 
Sbjct: 227 CYDPQKLKILQDLFTQSRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREE 286

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           VM  FK+G   +L+AT V+  GID+ D  +++  +  H     +H++ GR  RG
Sbjct: 287 VMKEFKSGHIDILVATDVVARGIDINDIKLVVNFDIPHDPEDYVHRI-GRTARG 339


>gi|229547450|ref|ZP_04436175.1| primosomal replication protein N [Enterococcus faecalis TX1322]
 gi|256854796|ref|ZP_05560160.1| primosomal protein n' [Enterococcus faecalis T8]
 gi|229307482|gb|EEN73469.1| primosomal replication protein N [Enterococcus faecalis TX1322]
 gi|256710356|gb|EEU25400.1| primosomal protein n' [Enterococcus faecalis T8]
 gi|315028352|gb|EFT40284.1| primosomal protein [Enterococcus faecalis TX4000]
          Length = 810

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 405


>gi|24662330|ref|NP_648413.1| CG6418 [Drosophila melanogaster]
 gi|7294797|gb|AAF50131.1| CG6418 [Drosophila melanogaster]
 gi|16769458|gb|AAL28948.1| LD32732p [Drosophila melanogaster]
 gi|220946788|gb|ACL85937.1| CG6418-PB [synthetic construct]
          Length = 791

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 134/322 (41%), Gaps = 47/322 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   +  M   V    Q         +I+AP   L+ Q Y   KK+ +   + V 
Sbjct: 315 TGSGKTAAFIWPMLMHVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVV 374

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRF-- 406
              G   +  + KALE+     A II+ T     D ++       ++  +++DE  R   
Sbjct: 375 CCYGGGSKWEQSKALEQ----GAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFH 430

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPR--TLVLTSLGD-IDISKITEKPAGRKPIKT 460
            G + +++       P    L+ +AT   R   L    L D + I +     A +   ++
Sbjct: 431 MGFEPQVRSICNHVRPDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQS 490

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           V +   P+ + + ++  L   LSEG    ++  +++ +  SN   +++ +N L       
Sbjct: 491 VYVFPNPLQKWNWLLCHLVKFLSEGSVLIFVTKKVDAETVSN-NLLIKEYNCL------- 542

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA--- 574
             ++HG M   D+  V+  FK   C +L+AT V   G+D     I  I N  ++  A   
Sbjct: 543 --LLHGDMDQADRNKVITQFKRKECDILVATDVAARGLD-----IPHIRNVVNYDTARDI 595

Query: 575 QLHQLR-GRVGRGEEISSCILL 595
           + H  R GR GR  E  +   L
Sbjct: 596 ETHTHRIGRTGRAGEKGNAYTL 617


>gi|294638413|ref|ZP_06716647.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda ATCC 23685]
 gi|291088471|gb|EFE21032.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda ATCC 23685]
          Length = 202

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 16/204 (7%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   +  L+KI            DLL + P  + D+ +   IS++      T
Sbjct: 10  PLTTLHGVGASQADKLAKI------GLVTIEDLLLHLPLRYEDQTHLYAISDLLPGIPAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           ++G + + +     +R+     ++DG+G +TL FF     M KN   +G+++   G++K+
Sbjct: 64  VSGEVLR-TEVSFGRRKMMTCQISDGSGILTLRFFNFTVAM-KNNLAQGKQVIAYGEVKR 121

Query: 132 LKNRIIMVHPHY-IFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
                 ++HP Y I     +V     +  +YS   GL     +K+I +AL    +L    
Sbjct: 122 GSRGPEIIHPEYKIKVAGAEVKLQETLTPIYSTTEGLRQTSLRKLIEQALE---LLDTCA 178

Query: 190 EKDLLQKK---SFPSIAEAFNIIH 210
             +LL  +     P +A A   +H
Sbjct: 179 INELLPDQFIHGLPPLATALRTLH 202


>gi|257080476|ref|ZP_05574837.1| primosomal protein N [Enterococcus faecalis E1Sol]
 gi|256988506|gb|EEU75808.1| primosomal protein N [Enterococcus faecalis E1Sol]
          Length = 810

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 405


>gi|256960471|ref|ZP_05564642.1| primosomal protein n [Enterococcus faecalis Merz96]
 gi|293385129|ref|ZP_06630955.1| primosomal proteiN n [Enterococcus faecalis R712]
 gi|293389102|ref|ZP_06633574.1| primosomal proteiN n [Enterococcus faecalis S613]
 gi|312906687|ref|ZP_07765687.1| primosomal protein [Enterococcus faecalis DAPTO 512]
 gi|312910851|ref|ZP_07769687.1| primosomal protein N' [Enterococcus faecalis DAPTO 516]
 gi|256950967|gb|EEU67599.1| primosomal protein n [Enterococcus faecalis Merz96]
 gi|291077606|gb|EFE14970.1| primosomal proteiN n [Enterococcus faecalis R712]
 gi|291081570|gb|EFE18533.1| primosomal proteiN n [Enterococcus faecalis S613]
 gi|310627335|gb|EFQ10618.1| primosomal protein [Enterococcus faecalis DAPTO 512]
 gi|311288874|gb|EFQ67430.1| primosomal protein N' [Enterococcus faecalis DAPTO 516]
          Length = 810

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q   +    S    Q+ A++ ILQ + ++     +L+G  GSGKT V L  +A  +  G 
Sbjct: 263 QTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEGITGSGKTEVYLQVIAEVLNQGK 322

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F  ++ ++    V ++   + Q  +     +I  G+A +++G
Sbjct: 323 TAIMLVPEISLTPQMVQRFKSRFGEH----VAVMHSGLSQGEKYDEWRKIERGEAEVVVG 378

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     I+   + ++I+DE+H    +Q
Sbjct: 379 ARSAIFAPIE--NIGVIIIDEEHEASYKQ 405


>gi|15668850|ref|NP_247653.1| DEAD-box ATP dependent DNA helicase [Methanocaldococcus jannaschii
           DSM 2661]
 gi|2500540|sp|Q58083|H669_METJA RecName: Full=Probable ATP-dependent RNA helicase MJ0669
 gi|1591383|gb|AAB98663.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 367

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 125/312 (40%), Gaps = 49/312 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           + Q   GSGKT    I +   V    G +A+I+ P   LA Q  + I+    N  + +  
Sbjct: 48  VAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAK 107

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRF 406
           I G      + KAL+      A+I++GT     D I    L        IL   DE    
Sbjct: 108 IYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNM 162

Query: 407 G-VQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           G ++   K+         +L+ +  +PR    L    +GD    K               
Sbjct: 163 GFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA-------------- 208

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV--------ERFNSLHEHF 514
               +I+  IE+  V ++E ++   +C  ++ K+   F  +V        +   S+    
Sbjct: 209 ----KINANIEQSYVEVNENERFEALCRLLKNKE---FYGLVFCKTKRDTKELASMLRDI 261

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 IHG +S   +E V+  FK    ++LIAT V+  GIDV D + +I  +      +
Sbjct: 262 GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPES 321

Query: 575 QLHQLRGRVGRG 586
            +H++ GR GR 
Sbjct: 322 YMHRI-GRTGRA 332


>gi|313113574|ref|ZP_07799162.1| primosomal protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624089|gb|EFQ07456.1| primosomal protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 752

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 14/207 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+N P + T+ Q++A   +L  +        +L G  GSGKTLV L  +A  +E G +A+
Sbjct: 205 LKNEPITLTQEQQAAYDALLPKLEDDAPHSALLYGVTGSGKTLVFLKLIARCLEQGRRAL 264

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P I +  Q       ++ +     V +    +    R    + I  G A I++GT +
Sbjct: 265 VLVPEISLTPQMILRLKSQFGRR----VAVQHSALNHTERLLQWQMIQDGGADIVVGTRS 320

Query: 385 LFQDSIQYYKLILVIVDEQH--------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
                ++   LI++  +++H        R+   +  +         +LL +ATP   +  
Sbjct: 321 AIFSPLENIGLIIIDEEQEHTYRSESAPRYSAHEVARQRAAENGALLLLASATPSTESFY 380

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVII 463
               G   + ++T++  G  P+ TV I
Sbjct: 381 AAQHGRTQLVRLTQRYGG-NPLPTVQI 406


>gi|194897089|ref|XP_001978588.1| GG17597 [Drosophila erecta]
 gi|190650237|gb|EDV47515.1| GG17597 [Drosophila erecta]
          Length = 955

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E +T++   IHG  +  +++SV+  F+NG   +LIAT V   G+DV D   +I  +  + 
Sbjct: 518 EGYTATS--IHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNS 575

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
               +H++ GR GR +++ +    + P  +K +   +SVL+
Sbjct: 576 SENYVHRI-GRTGRCQQLGTAYTFFTPDNAKQARELISVLE 615


>gi|11499053|ref|NP_070287.1| Hef nuclease [Archaeoglobus fulgidus DSM 4304]
 gi|2649107|gb|AAB89786.1| ATP-dependent RNA helicase, putative [Archaeoglobus fulgidus DSM
           4304]
          Length = 741

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 35/199 (17%)

Query: 303 GSGKTLVALIAMAAAV-EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           G GKT +A + +A+ +    G+ + +AP   L +QH  F+K+  +  +I+   ++G +P 
Sbjct: 39  GLGKTTIAALVIASRLLNEDGKVLFLAPTKPLVEQHARFLKRVLKVEEIVS--LSGEVPP 96

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHR--------FGV 408
             R++  E+     A I++ T     + L    I    +ILV+ DE HR        F  
Sbjct: 97  EKRKELWEK-----ARIVVSTPQVVENDLLAGRISLEDVILVVFDEAHRAVGNYAYVFIA 151

Query: 409 QQRLKLTQKATAPHVLLMTATP--IPRTL--VLTSLGDIDISKITEKPA------GRKPI 458
           ++ L+  +K   P +L MTA+P   P  +  V+ +LG   I   TE  +      G+K I
Sbjct: 152 KEYLRTAKK---PLILAMTASPGSDPERIMEVIQNLGIEAIEVRTEWDSDVAPYVGKKRI 208

Query: 459 KTVIIPI-NRIDEVIERLK 476
           + + + I   + EV ERLK
Sbjct: 209 EWIKVDIPEEMKEVKERLK 227


>gi|322700629|gb|EFY92383.1| ATP-dependent RNA helicase dbp-2 [Metarhizium acridum CQMa 102]
          Length = 552

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 143/343 (41%), Gaps = 51/343 (14%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +++AP   LA Q  + I K+ ++++I  
Sbjct: 181 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGRSSRIRN 240

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P+  + + L R       + I T     D ++  K  L     +++DE  R  
Sbjct: 241 TCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRML 296

Query: 407 --GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
             G +             R  L   AT P  +   A       +  ++G +D+S   +IT
Sbjct: 297 DMGFEPQIRKIIEQIRPDRQTLMYSATWPKEVRAMAADFQTDFIQVNIGSMDLSANHRIT 356

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +       I  V+  + + D +I+ L+ V+   +    I    +   +      + RF  
Sbjct: 357 Q-------IVEVVSDMEKRDRMIKHLEQVMENKENKILIFVGTKRVADD-----ITRF-- 402

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +    +++I HG     +++ V+D FK G   +++AT V   GIDV + + ++  +  
Sbjct: 403 LRQDGWPALSI-HGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYP 461

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     +H++ GR GR     + I  +     K +   ++VL+
Sbjct: 462 NNSEDYIHRI-GRTGRAGAKGTAITFFTTDNQKQARELVNVLQ 503


>gi|299535193|ref|ZP_07048517.1| RNA helicase-like protein [Lysinibacillus fusiformis ZC1]
 gi|298729314|gb|EFI69865.1| RNA helicase-like protein [Lysinibacillus fusiformis ZC1]
          Length = 382

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 145/335 (43%), Gaps = 44/335 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKTL  ++ +   V       Q +I+AP   LA Q  E I+++T  T I V+
Sbjct: 38  VAESPTGSGKTLAYVLPLLNKVNGAKKQTQGLIVAPSQELAMQIVEVIREWTAGTDITVQ 97

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE-----Q 403
            + G    A + + L++    +  I++GT     +  +  KL L     VI+DE      
Sbjct: 98  QLIGGANSARQIEKLKK----KPTIVVGTPGRLNELARAGKLKLKEVETVILDECDQLLS 153

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             + V  +  +   A    V++++AT      ++ S    +  +   KP     +  V+ 
Sbjct: 154 REYRVVIKSFIEGSAYGRQVVVVSATITEEIELVASRMMFEPLRFKIKPEDMLKVGKVVH 213

Query: 464 PINRIDE-----VIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHFTS 516
              +++E      + RL    +EG +A      I++   KE+             ++ ++
Sbjct: 214 SFVKVEERDKTDFLRRLS--HTEGLRALAFVNNIDQLLMKETKL-----------QYRSA 260

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I  +H  M   +++  +D+F+ G  ++LIAT +   G+D+   + +I  +        L
Sbjct: 261 PIVTLHSDMKKEERKKALDAFRKGDARILIATDIAARGLDIAGLTHVIHVDVPRTIEQYL 320

Query: 577 HQLRGRVGR----GEEISSCILLYHPPLSKNSYTR 607
           H+  GR GR    GE ++  +L Y    +   +TR
Sbjct: 321 HR-SGRTGRAGADGEVLT--LLSYRDEKTYKKWTR 352


>gi|281203069|gb|EFA77270.1| DEAD/DEAH box helicase domain-containing protein [Polysphondylium
           pallidum PN500]
          Length = 1147

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 142/334 (42%), Gaps = 45/334 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AI  I++          I Q   G+GKT    I    +++      Q +I++P
Sbjct: 71  PSAIQQRAILPIIKGHDT------IAQAQSGTGKTATFSIGALQSIDVSVKSPQVLILSP 124

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH------GQAHIIIGTH 383
              LAQQ  + +        + V    G    A   + LE   H      G+   +I   
Sbjct: 125 TRELAQQIQKVLMALGGFMSVQVHAFVGQKTIAEDLRRLEAGVHIVSGTPGRVLDLISRK 184

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLG 441
           AL    I+   LIL   DE    G QQ++    +   P   ++L++AT       LT   
Sbjct: 185 ALATRHIKM--LILDEADEMLGLGFQQQINDVYRYLPPATQIVLVSAT-------LTQ-- 233

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW----ICPQIEEKKE 497
             D+  +TEK     P++   I + R +  +E +K      +K  W    +C   +    
Sbjct: 234 --DVINMTEKFM-TDPVR---ILLKRDELTLEGIKQFFVSVEKEEWKFGTLCDIYDSLTI 287

Query: 498 SN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +    F +  ++ N L +       ++A +HG M   ++E ++ SF++G  ++LI T ++
Sbjct: 288 TQAVIFCNTKQKVNILTDKMREANFTVASMHGDMEQKEREEIIKSFRSGENRVLITTDIL 347

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
             GIDV   S++I  +  +     +H++ GR GR
Sbjct: 348 ARGIDVQQVSLVINYDLPNDRENYIHRI-GRSGR 380


>gi|307153172|ref|YP_003888556.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 7822]
 gi|306983400|gb|ADN15281.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7822]
          Length = 482

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 147/356 (41%), Gaps = 48/356 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L +I F+ PT  Q+ AI  +L+          + Q   G+GKT    + +   ++     
Sbjct: 18  LESIGFTNPTDIQQKAIPLLLEGHDV------VGQSQTGTGKTAAYSLPLLERIDRHSRS 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LAQQ  + IK +  + ++ +  + G      + ++LER       I++G
Sbjct: 72  VQALILTPTRELAQQVAQAIKDFVDDRRLFILTVYGGQSIDRQIRSLER----GVQIVVG 127

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPI 431
           T     D ++  KL        +L   DE    G    +K  L Q  +       +AT  
Sbjct: 128 TPGRVIDLLERKKLSLDELQMAVLDEADEMLSMGFIDDVKKILQQTPSTRQTACFSATMP 187

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           P    L       I +  + P      +    P  RID+ I  +    S+ K    I  +
Sbjct: 188 PEIKRL-------IDQFLKSPVVVSATQHEATP-ERIDQHIYMVPRGWSKLKALQPIL-E 238

Query: 492 IEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           IE+ + +       ++  E    L E     +   HG +S   +E ++  F+ G  KL++
Sbjct: 239 IEDPESAIIFVRTKQTATELTGKLQES-GHHVDEYHGNLSQAQRERLVQRFREGKIKLVV 297

Query: 547 ATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   G+DV D S +I     +N E +    +H++ GR GR  +  + I L  P
Sbjct: 298 ATDIAARGLDVEDLSHVINFDLPDNTETY----IHRI-GRTGRAGKTGTAISLIEP 348


>gi|73667161|ref|YP_303177.1| primosomal protein n [Ehrlichia canis str. Jake]
 gi|72394302|gb|AAZ68579.1| Primosomal protein n [Ehrlichia canis str. Jake]
          Length = 658

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 12/175 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQAV 325
           ++  S +  Q  A  DI+  +S  + +  +L G+ GSGKT V    +   +  +   QA+
Sbjct: 125 DVAISLSDEQRFAYDDIIDKVSGYSVI--VLDGETGSGKTEVYCEVIRELIKRDETAQAL 182

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-A 384
           I+ P  +L  Q  + IK+Y  ++   VE    N+   +RR+    +A+GQ+ I+IG   A
Sbjct: 183 ILLPEIVLTLQLIKRIKRYF-DSYYPVEW-HSNLTLKNRREYWLSVAYGQSLIVIGARSA 240

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           LF   + Y  L ++IVDE+H    +Q   +   A    ++L     IP  ++L+S
Sbjct: 241 LF---LPYNNLKVIIVDEEHDSSFKQESGVLYNARDMSIVLAKNLNIP--IILSS 290


>gi|301059813|ref|ZP_07200707.1| putative ATP-dependent RNA helicase RhlE [delta proteobacterium
           NaphS2]
 gi|300446139|gb|EFK10010.1| putative ATP-dependent RNA helicase RhlE [delta proteobacterium
           NaphS2]
          Length = 429

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 149/350 (42%), Gaps = 45/350 (12%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT----LVAL 311
           N   ++A  ++      PT  Q  AI  +L +    + ++ + Q   G+GKT    L  L
Sbjct: 7   NFHPRVAAGVVAAGYVDPTPIQARAIPQVLDN----HDIMGVAQ--TGTGKTAAFVLPIL 60

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKAL 368
             + A    G +A+IMAP   LA+Q ++ I+   + T +    + G +   PQ      +
Sbjct: 61  HRLMAKKSKGVRALIMAPTRELAEQIHQAIEVLGRETHVKSVTVYGGVGIHPQ------I 114

Query: 369 ERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-----FGVQQRLKLTQKA 418
           E + H  AHI++       D     ++ + +L +++VDE  +     F    R  L +  
Sbjct: 115 ENLKH--AHIVVACPGRLLDHMNRKTVDFSRLEMLVVDEADQMFDMGFLPDIRRILARLP 172

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                LL +AT  P    L   GDI I+    +     P +TV   +  +   ++   ++
Sbjct: 173 KKRQTLLFSATMPPEIRRLE--GDILINPSMVQIGAVAPAETVRHALYPVPHHLKTALLL 230

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
              G            K    F     R  SL +   S+    A + G +S   +++ ++
Sbjct: 231 KLLGDTVV--------KSVLVFTRTKYRAKSLGKKLVSAGYPCASLQGNLSQGRRQAALE 282

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            F++GT K+L+AT +   GID+   S +I  +      A +H++ GR GR
Sbjct: 283 GFRDGTYKILVATDIAARGIDITRVSHVINYDIPSTPEAYIHRI-GRTGR 331


>gi|194865632|ref|XP_001971526.1| GG15018 [Drosophila erecta]
 gi|190653309|gb|EDV50552.1| GG15018 [Drosophila erecta]
          Length = 824

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 136/325 (41%), Gaps = 49/325 (15%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  NT +   
Sbjct: 203 TGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNT 262

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
            I G  P+  + + LER       I+I T     D     +    +   +++DE  R   
Sbjct: 263 CIFGGAPKGQQARDLER----GVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLD 318

Query: 407 -GVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            G + ++ K+ Q+      +LM +   P+ +       L +   ++I  ++   +    I
Sbjct: 319 MGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSL--SANHNI 376

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS- 517
             ++   +  +++++ +K++     +         E K   F    +R + +  + +   
Sbjct: 377 LQIVDVCDENEKLMKLIKLLTDISAE--------NETKTIIFVETKKRVDEITRNISRQG 428

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHF 571
                IHG  S  +++ V+ SF+NG   +L+AT V   G+DV D   +I      N+E +
Sbjct: 429 WRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDY 488

Query: 572 GLAQLHQLRGRVGRGEEISSCILLY 596
               +H++ GR GR     +   L+
Sbjct: 489 ----VHRI-GRTGRSNNTGTAYTLF 508


>gi|154253690|ref|YP_001414514.1| DEAD/DEAH box helicase domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154157640|gb|ABS64857.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 504

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 150/351 (42%), Gaps = 57/351 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI  +L        +L I Q   G+GKT    + M   +  G       +++I
Sbjct: 24  PTPIQAQAIPHVLAGRD----VLGIAQ--TGTGKTASFTLPMIDKLSRGRARARMPRSLI 77

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  + Y +  ++ + ++ G +    + K L+R       ++I T    
Sbjct: 78  LEPTRELAAQVAENFETYGKYNKLSMALLIGGVSFGDQEKKLDR----GVDVLIATPGRL 133

Query: 387 QDSIQYYKLIL-----VIVDEQHRF----------GVQQRLKLTQKATAPHVLLMTATPI 431
            D     K++L     +++DE  R            + ++L  T++      L  +AT  
Sbjct: 134 LDHCNRGKVLLTGVQILVIDEADRMLDMGFIPDIEEICKKLPFTRQ-----TLFFSATMP 188

Query: 432 PRTLVLTSL-----GDIDISKITEKPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKK 484
           P    LT         I++++ +   A    IK V++   R    +V++R+ +     K 
Sbjct: 189 PEIQRLTDTFLHNPERIEVARASSTSAN---IKQVLLKTTRDGKRDVLQRM-IEEDNVKN 244

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A   C     K++    SV+ER  +L +   S+ AI HG +    +   +D F+NGT +L
Sbjct: 245 AIIFC---NRKRDV---SVLER--ALSKSGLSAGAI-HGDLDQSTRTRTLDGFRNGTIRL 295

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           L+A+ V   G+D+ D S +   +        +H++ GR GR  +  + + L
Sbjct: 296 LVASDVAARGLDIPDVSHVFNYDVPSHAEDYVHRI-GRTGRAGKSGTAVTL 345


>gi|148700137|gb|EDL32084.1| mCG141508, isoform CRA_c [Mus musculus]
          Length = 689

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 137/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 175 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 234

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     + +I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 235 LSVAC-FYGGTSYQSQ----INQIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 288

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 289 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 343

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 344 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 397

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 398 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 453

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      C+  Y P
Sbjct: 454 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICVCFYQP 491


>gi|56461561|ref|YP_156842.1| primosomal protein A [Idiomarina loihiensis L2TR]
 gi|56180571|gb|AAV83293.1| Primosomal protein A (replication factor Y), superfamily II
           helicase [Idiomarina loihiensis L2TR]
          Length = 736

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 8/135 (5%)

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQ 336
           E A+     +  QK+  L +L+G  GSGKT V L AM   +E G Q +++ P IG+  Q 
Sbjct: 210 EQAVAVSTINQQQKHSTL-LLEGVTGSGKTEVYLQAMEPVLERGEQVLVLVPEIGLTPQT 268

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
               ++++ +     V ++   M    R        HG A IIIGT +      Q  KL 
Sbjct: 269 ----LQRFKERFDAPVVMLHSGMSDRERLNTWLDAKHGHAAIIIGTRSAVFTPCQ--KLG 322

Query: 397 LVIVDEQHRFGVQQR 411
           L++VDE+H    +Q+
Sbjct: 323 LIVVDEEHDLSYKQQ 337


>gi|71749190|ref|XP_827934.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70833318|gb|EAN78822.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 660

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/338 (19%), Positives = 137/338 (40%), Gaps = 65/338 (19%)

Query: 302 VGSGKTLVALIAM--------------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
            GSGKT   LI                +    +  QA+I+AP   L+ Q Y   +K+T +
Sbjct: 203 TGSGKTASYLIPAINEILLNISNRPPYSPGSHSSPQALILAPTRELSLQIYGEARKFTYH 262

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDE 402
           T +   ++ G     H+   L R       +++ T     D      +++ ++  +I+DE
Sbjct: 263 TPVRCVVVYGGADPRHQVHELSR----GCKLLVATPGRLMDMFSRGYVRFSEIRFLILDE 318

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATP---IPR-----TLVLTSLGDIDISKITEKPAG 454
             R        +      P + ++   P   +PR     TL+ ++   ++I ++  +   
Sbjct: 319 ADR--------MLDMGFEPQIRMIVQGPDSDMPRAGQRQTLLYSATFPVEIQRLAREFMC 370

Query: 455 RKPIKTVIIPINRIDEVIERLK---------------VVLSEGKKAYWICPQIEEKKESN 499
           R       + + R+    E +                + L    +   +   +E+K++++
Sbjct: 371 RH----SFLQVGRVGSTTENITQDVRWIEDPDKRQALLTLLRENEGKLVLVFVEKKRDAD 426

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           +   +ERF    E    SI   HG     ++E  +  FK+G C++L+AT V   G+D+ +
Sbjct: 427 Y---LERFLRNSELACVSI---HGDRVQREREEALRLFKSGACQVLVATDVASRGLDIPN 480

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             ++I  +        +H++ GR GR  ++   I  ++
Sbjct: 481 VGVVIQYDMPSNIDDYVHRI-GRTGRAGKVGVAISFFN 517


>gi|257457231|ref|ZP_05622406.1| primosomal protein N' [Treponema vincentii ATCC 35580]
 gi|257445382|gb|EEV20450.1| primosomal protein N' [Treponema vincentii ATCC 35580]
          Length = 690

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 24/235 (10%)

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEG-KIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           + A  IAL  M    K+E G  +N +G + A         + ++ Q SA++ I      +
Sbjct: 120 ICAEGIALSAMLPSGKREAG-ELNTDGIEFAGTDFSASALTLSEEQRSAVEAISGCTGGE 178

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-YTQNTQI 350
                 + G  GSGKT V L A + A+ AG   + + P   L+ Q  E +KK +     +
Sbjct: 179 ---FFYVYGITGSGKTEVFLQAASRALAAGKSVIYLVPEITLSHQVAETVKKRFGDRCAV 235

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH------ 404
           +   +TG+   A  R    RI  G+A I++G  +     ++   L L+I+DE+H      
Sbjct: 236 LHSGLTGSKRLAEWR----RITRGEARIVVGVRSAIFAPVR--DLGLIIIDEEHDGSYKS 289

Query: 405 ----RFGVQQ-RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
               R+  +Q  + L +K   P +++ +ATP      L   G I   +++E+ +G
Sbjct: 290 GFAPRYHARQVAMYLCKKHGCP-LVMGSATPSVEAWHLMKTGAIRTLRLSERLSG 343


>gi|253741975|gb|EES98832.1| Translation initiation factor eIF-4A, putative [Giardia
           intestinalis ATCC 50581]
          Length = 391

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 133/307 (43%), Gaps = 35/307 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I M   ++      QA+I++P   LA Q  + ++      Q+ V 
Sbjct: 61  IAQAQSGTGKTAAFTIGMLQRIDIAMKSPQAIILSPTRELALQTLKVVEGIGSRLQVEVA 120

Query: 354 IITGNMPQAHRRKALERIAHGQA-HIIIGTHA-----LFQDSIQYYKLILVIVDEQH--- 404
              G        +  + I   Q+ H+I+ T       L +  +    + +VI+DE     
Sbjct: 121 QCIGGT------QVDDDITAAQSCHLIVATPGRLLSLLQKKYVTTSNVKMVILDEADEML 174

Query: 405 -RFGVQQRLKLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPA--GRKPIKT 460
            R   +Q + + +   A   ++L++AT  P  L LT     D   I  K A      I+ 
Sbjct: 175 SRGFTEQIVSIMKFMNADIQIVLVSATLPPEILELTRQFMRDPVSILVKEAELTLDGIRQ 234

Query: 461 VIIPINRI--DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            ++ +      EV+E +  VLS  ++    C  I   KE     + E+  S       +I
Sbjct: 235 YVVELQDAWKTEVVEDIYKVLSV-QQGVIFCNSIARVKE-----LAEKLKSAGH----TI 284

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           + IH  +   ++  +M  F++G  ++LIAT +I  GIDV + S++I  +        LH+
Sbjct: 285 SCIHSELDQAERNKIMGEFRSGQTRILIATNIIARGIDVQNVSLVINYDIPREAETYLHR 344

Query: 579 LRGRVGR 585
           + GR GR
Sbjct: 345 I-GRSGR 350


>gi|28574962|ref|NP_648062.2| CG10077, isoform A [Drosophila melanogaster]
 gi|20976828|gb|AAM27489.1| GH10652p [Drosophila melanogaster]
 gi|28380590|gb|AAF50635.2| CG10077, isoform A [Drosophila melanogaster]
 gi|220947070|gb|ACL86078.1| CG10077-PA [synthetic construct]
 gi|220960420|gb|ACL92746.1| CG10077-PA [synthetic construct]
          Length = 818

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 138/330 (41%), Gaps = 59/330 (17%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  NT +   
Sbjct: 203 TGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNT 262

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
            I G  P+  + + LER       I+I T     D     +    +   +++DE  R   
Sbjct: 263 CIFGGAPKGQQARDLER----GVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLD 318

Query: 407 -GVQQRL-KLTQKATAPHVLLMTATPIPRTL-----------VLTSLGDIDIS---KITE 450
            G + ++ K+ Q+      +LM +   P+ +           +  ++G + +S    I +
Sbjct: 319 MGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQ 378

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
                  I  V     ++ ++I+ L  + +E +    I   +E KK      V E   ++
Sbjct: 379 -------IVDVCDENEKLMKLIKLLTDISAENETKTIIF--VETKKR-----VDEITRNI 424

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IE 566
                 + AI HG  S  +++ V+ SF+NG   +L+AT V   G+DV D   +I      
Sbjct: 425 SRQGWRACAI-HGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPS 483

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           N+E +    +H++ GR GR     +   L+
Sbjct: 484 NSEDY----VHRI-GRTGRSNNTGTAYTLF 508


>gi|115524965|ref|YP_781876.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115518912|gb|ABJ06896.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 517

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 149/370 (40%), Gaps = 74/370 (20%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q+ AI  +   M++++ +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 23  TPTPIQDQAIPHV---MARRD-VLGIAQ--TGTGKTAAFVLPMLTLLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDIKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +   L+L     +++DE  R        +      P +  +    P  R TL  T
Sbjct: 133 LLDHTERGGLLLTGVELLVIDEADR--------MLDMGFIPDIERICKLVPFTRQTLFFT 184

Query: 439 SLGDIDISKITE------------KPA-------------GRKPIKTVIIPINRIDEVIE 473
           +    +I +ITE            KPA             GR+P        ++  E + 
Sbjct: 185 ATMPTEIRRITEAFLHNPVKIEVSKPASTAVTVTQSQVAAGREP--------HQKRETLR 236

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           +L    S+ + A   C        +  R V     SL +H   S+  +HG M    + + 
Sbjct: 237 QLLREASDLQNAIIFC--------NRKREVALLAKSLLKH-GFSVGALHGDMDQSARTAA 287

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +++F+ G   LL+A+ V   G+D+ + S +   +  H     +H++ GR GR     + +
Sbjct: 288 LEAFRKGELPLLVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRI-GRTGRAGRAGTAV 346

Query: 594 LLYHPPLSKN 603
            L  PP  K+
Sbjct: 347 TLVAPPDGKS 356


>gi|262340963|ref|YP_003283818.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272300|gb|ACY40208.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 551

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 162/387 (41%), Gaps = 57/387 (14%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGD 301
           M+K FK+      N   K   K L  I F  PT  QE  I  +L   S +  ++ + Q  
Sbjct: 1   MKKTFKE-----YNFFNKNILKALEAIGFQYPTTIQEKVIPFLL---SSERDVIALAQ-- 50

Query: 302 VGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQ----HYEFIKKYTQNTQIIVEI 354
            G+GKT    + +   V    +  QA I+ P   L  Q     Y F  K+    +II   
Sbjct: 51  TGTGKTAAFGLPIIQKVNFDLSIPQAFILCPTRELCVQITRDFYRF-SKFLSTIKIIS-- 107

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRF 406
           + G +    + K+L+     + HIIIGT     D I+  KL        IL   DE    
Sbjct: 108 LYGGVSIDSQIKSLQ----NKTHIIIGTPGRIIDLIKRKKLHLEKIKYLILDEADEMLNM 163

Query: 407 GVQQRLKLTQKATAPH--VLLMTAT------PIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           G ++ L    K    +   LL +AT       I RT  LT   +I   +      G K I
Sbjct: 164 GFKEELDYIVKMLPKNRQSLLFSATMSKYMNAIARTY-LTDPVEIIAGQKNIVSDGVKHI 222

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             ++  +N+    ++R+ V ++ G      C   +E KE     + + +N+         
Sbjct: 223 YYMVGHLNKKYSALKRI-VDINPGIYGIIFCETKKETKEIAEYLIKDGYNA--------- 272

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             ++G +S   +ESVM+ F+N   + L+AT V   G+DV + + +I  N        +H+
Sbjct: 273 DALYGDLSQTQRESVMNRFRNKNLQFLVATDVAARGLDVHNITHVINYNLPKESDIYIHR 332

Query: 579 LRGRVGRGEE--ISSCILLYHPPLSKN 603
             GR GR     IS CI+  H   ++N
Sbjct: 333 -SGRTGRAGNSGISVCII--HSKETRN 356


>gi|259502863|ref|ZP_05745765.1| ATP-dependent RNA helicase DbpA [Lactobacillus antri DSM 16041]
 gi|259169230|gb|EEW53725.1| ATP-dependent RNA helicase DbpA [Lactobacillus antri DSM 16041]
          Length = 463

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 169/401 (42%), Gaps = 63/401 (15%)

Query: 264 KILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           K ++ I F  PT  QE  I DIL   S       + Q   GSGKT   L+ + + ++   
Sbjct: 23  KAVKAINFHEPTAVQEKVIPDILAGKSV------VGQSATGSGKTHAFLLPIFSRLDPTV 76

Query: 323 Q---AVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           Q   AVI  P   LA Q Y   K+  Q  +  + +    G   + H+   LER    Q  
Sbjct: 77  QEVQAVITTPSRELAYQIYNAAKQLNQYADQPLTIHNYVGGTDKQHQIAQLER---KQPQ 133

Query: 378 IIIGTHALFQDSIQYYKL-----ILVIVDEQH---RFG-VQQRLKLTQKATAPHVLLMTA 428
           ++IGT     D I+   L      + +VDE       G ++Q  ++  +      +++ +
Sbjct: 134 LVIGTPGRVLDLIKSQHLDVHTATMFVVDEADMTLDMGFLEQVDQIAGRFPENLQMMVFS 193

Query: 429 TPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
             IP   R  +   + +  I +I        P  TVI P       +E   ++ ++G   
Sbjct: 194 ATIPEKLRPFLKKYMANPVIEEI--------PTATVINP------NVENW-LLSTKGHDR 238

Query: 486 YWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
             +  Q+    E      F +  ER   L  + T     +A+IHG +    ++  M   +
Sbjct: 239 NQLIYQLLTMGEPYLALVFANTKERAEELTRYLTEQGLKVALIHGGLEPRKRKRTMRQIR 298

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIE----NAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           N   + ++AT +   GID+   S++I +    + E+F    +H++ GR GR +   + I 
Sbjct: 299 NLDYQYVVATDLAARGIDIDGVSLVINDDLPTDLEYF----VHRV-GRTGRNQLTGTAIT 353

Query: 595 LYHPP----LSKNSYTRLS-VLKNTEDGFLIAEEDLKQRKE 630
           LY P     ++K     +S V K  ++G L+   D  +RK+
Sbjct: 354 LYEPAEDELIAKLEDRGISFVPKELKNGRLVTTHDRNRRKK 394


>gi|197337466|ref|YP_002157976.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
 gi|197314718|gb|ACH64167.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
          Length = 640

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 120/292 (41%), Gaps = 38/292 (13%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+IMAP   LA Q    +K   +N + + V  I G      + +AL R     AHII+G
Sbjct: 76  QAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALSR----GAHIIVG 131

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFG-VQQRLKLTQKA--TAPHVLL-MTAT 429
           T    +D +   +L        IL   DE  + G V     + +KA  TA  +L   T  
Sbjct: 132 TPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDTAQRILFSATMP 191

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLS-EGKKAYW 487
           P+ +T+V   L              R P +  +   N  +D+V +   VV   E  +A  
Sbjct: 192 PMVKTIVDRYL--------------RDPARVDVAGTNHTVDKVEQNFWVVKGVEKDEAMS 237

Query: 488 ICPQIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
              + EE   S      R   ER            A +HG +    +E  +D+ KNG   
Sbjct: 238 RLLETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVID 297

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +L+AT V+  G+DV   + +   +      + +H++ GR GR       ILL
Sbjct: 298 ILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILL 348


>gi|194763631|ref|XP_001963936.1| GF20995 [Drosophila ananassae]
 gi|190618861|gb|EDV34385.1| GF20995 [Drosophila ananassae]
          Length = 996

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E +T++   IHG  +  +++SV+  F+NG   +LIAT V   G+DV D   +I  +  + 
Sbjct: 523 EGYTATS--IHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNS 580

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
               +H++ GR GR +++ +    + P  +K +   +SVL+
Sbjct: 581 SENYVHRI-GRTGRCQQLGTAYTFFTPDNAKQARELISVLE 620


>gi|115375824|ref|ZP_01463075.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
 gi|310820250|ref|YP_003952608.1| ATP-dependent RNA helicase rhle [Stigmatella aurantiaca DW4/3-1]
 gi|115367134|gb|EAU66118.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
 gi|309393322|gb|ADO70781.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
          Length = 496

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 152/364 (41%), Gaps = 53/364 (14%)

Query: 260 KIAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           K+++ +LR +      +PT  Q+ AI   L        +L   Q   G+GKT    + + 
Sbjct: 7   KLSEPLLRAVKAEGYTTPTPIQQRAIPPALTGQD----VLGCAQ--TGTGKTAAFALPIL 60

Query: 316 AAVEAG-------GQAV---IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
             + AG       G+ +   ++ P   LA Q  +  + Y + T +   +I G + Q  + 
Sbjct: 61  HRLSAGRSPPPAQGRPIRVLVLTPTRELASQIADSFQAYGRFTGLSWAVIFGGVGQHAQE 120

Query: 366 KALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQK 417
           + L R       ++I T       + Q  + Y  L + ++DE  R    G    +K    
Sbjct: 121 QTLRR----GVDVLIATPGRLLDLMGQGLVSYKALEVFVLDEADRMLDMGFIHDVKRIIS 176

Query: 418 ATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           A  P    L  +AT +P  +   + G +           + P++  + P +   E +E+ 
Sbjct: 177 ALPPKRQTLFFSAT-MPPEIQSLAQGIL-----------KSPVRVEVTPESTTAETVEQK 224

Query: 476 KVVLSEGKKAYWICPQIEE---KKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDID 529
              +   +K + +   + +   ++   F       N + +H  SS      IHG  S   
Sbjct: 225 MFFVEREQKRHLLVHLLGDASIRRALVFTRTKHGANRVAKHLASSRISAEAIHGNKSQNA 284

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E  + +FK+G+C++L+AT +   GID+   + +I  +  +   + +H++ GR GR   +
Sbjct: 285 RERALGAFKDGSCRVLVATDIAARGIDIEGITHVINFDLPNIPESYVHRI-GRTGRAGAV 343

Query: 590 SSCI 593
            + +
Sbjct: 344 GTAL 347


>gi|268324317|emb|CBH37905.1| probable ATP-dependent DNA helicase [uncultured archaeon]
          Length = 781

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 142/346 (41%), Gaps = 56/346 (16%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           QE  IK++L   +QKN  L IL    G GK++   I    A+   G  V+++P+  L + 
Sbjct: 28  QEEIIKNVL---AQKN-TLAILP--TGVGKSICFQIP---ALIFDGLTVVVSPLIALMKD 78

Query: 337 HYEFIKKYTQNTQIIVEI--ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS----- 389
             + +KK+      I E   I   + QA + +  + +   +  ++      F D+     
Sbjct: 79  QVDNLKKHG-----IFEAAYINSMLDQATKEQIHKLLKESKLKMLYVAPETFVDNKLMSI 133

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++   + L+ +DE H   V              V+     P P  L LT+     +    
Sbjct: 134 LKTCNISLIAIDEVHCISVWGHNFRPDYLRLQRVIADLHNPPPPVLGLTATATKTVENDI 193

Query: 450 EKPAG-----------RKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           +K  G           RK +   +IP+   NR +  ++RL   L      Y         
Sbjct: 194 QKQLGIECDVFKDSFDRKNLLFSVIPMKNNNRKELSLKRLLGQLKGSTIVY--------- 244

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID-KESVMDSFKNGTCKLLIATTVIEVG 554
              NF    E   +  +    + +  HG++ D + ++ V + F NG  ++++AT    +G
Sbjct: 245 --VNFTKTAEWLATYLDDSGLNASYYHGQIRDSEERKRVQNDFINGRTRIVVATNAFGMG 302

Query: 555 IDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLY 596
           ID  D   II     H+ L +     +Q  GR GR + IS+CILLY
Sbjct: 303 IDKEDIRAII-----HYNLPKSIENYYQEVGRAGRDQNISNCILLY 343


>gi|195438679|ref|XP_002067260.1| GK16276 [Drosophila willistoni]
 gi|194163345|gb|EDW78246.1| GK16276 [Drosophila willistoni]
          Length = 950

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E +T++   IHG  +  +++SV+  F+NG   +LIAT V   G+DV D   +I  +  + 
Sbjct: 519 EGYTATS--IHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNS 576

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
               +H++ GR GR +++ +    + P  +K +   +SVL+
Sbjct: 577 SENYVHRI-GRTGRCQQLGTAYTFFTPDNAKQARELISVLE 616


>gi|149635102|ref|XP_001510775.1| PREDICTED: similar to DDX5 protein [Ornithorhynchus anatinus]
          Length = 682

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 137/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y++  ++   
Sbjct: 208 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKST 267

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 268 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 323

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  +  ++G +++S      A
Sbjct: 324 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------A 377

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + +++I  ++ ++SE           +E K   F     R + L 
Sbjct: 378 NHNILQIVDVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELT 426

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 427 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 486

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 487 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 529


>gi|82702922|ref|YP_412488.1| DEAD/DEAH box helicase-like [Nitrosospira multiformis ATCC 25196]
 gi|82410987|gb|ABB75096.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
           25196]
          Length = 472

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 143/335 (42%), Gaps = 40/335 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT----LVALIAMAAAVEA---GGQA 324
           SPT  QE AI ++L           +     G+GKT    L AL  +A+  +    G + 
Sbjct: 23  SPTPIQEQAIPELLTGHDV------LASAQTGTGKTAAFMLPALHRLASPSQVRSRGPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  E   KY +   +  V  I G MP   + K L ++      I++ T 
Sbjct: 77  LVLTPTRELALQVSEATAKYGKYLPRAKVVSILGGMPYPLQNKLLSQVVD----ILVATP 132

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPR 433
               D IQ     + +L ++++DE  R    G  + ++    AT      LL +AT    
Sbjct: 133 GRLIDHIQRGRIDFSRLEMLVLDEADRMLDMGFIEDVERIASATPATRQTLLFSAT---- 188

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
              L S  D   +++   P  R  + T    +N I++ +  +  +  + +    +   IE
Sbjct: 189 ---LDSAMDNVAARLLNSPK-RIQVATSKARLNNIEQRLHYVDDISHKNQLLDHLLRDIE 244

Query: 494 EKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            K+   F +     + L +  ++   + A +HG MS  D+   +   + G  ++L+AT V
Sbjct: 245 LKQAIVFTATKRDADMLADGLSAQGHAAAALHGDMSQRDRNRTLIKLRQGGIRVLVATDV 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              GIDV   + +I  +   F    +H++ GR GR
Sbjct: 305 AARGIDVAGITHVINFDLPKFAEDYVHRI-GRTGR 338


>gi|18857967|ref|NP_572424.1| CG10777 [Drosophila melanogaster]
 gi|7290853|gb|AAF46295.1| CG10777 [Drosophila melanogaster]
 gi|16648356|gb|AAL25443.1| LD32873p [Drosophila melanogaster]
 gi|220947598|gb|ACL86342.1| CG10777-PB [synthetic construct]
          Length = 945

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG  +  +++SV+  F+NG   +LIAT V   G+DV D   +I  +  +     +H++ 
Sbjct: 521 IHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRI- 579

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           GR GR +++ +    + P  +K +   +SVL+
Sbjct: 580 GRTGRCQQLGTAYTFFTPDNAKQARELISVLE 611


>gi|328955669|ref|YP_004373002.1| replication restart DNA helicase PriA [Coriobacterium glomerans
           PW2]
 gi|328455993|gb|AEB07187.1| replication restart DNA helicase PriA [Coriobacterium glomerans
           PW2]
          Length = 828

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P + T +Q +A+K I + +S     + ++ G  GSGKT V L A+   +EAG  A ++ P
Sbjct: 256 PETLTGAQVAALKAIGRAVSAGRGDVVLIDGVTGSGKTEVYLSAIEPVLEAGRSACVLVP 315

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I + AQ    F  ++       V +    +    R    +R+  G A +++G   ALF 
Sbjct: 316 EISLTAQTVGRFRSRFGAT----VAVFHSRLSAGERLDQWDRVRDGTARVVVGARSALF- 370

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 371 --CPFSDLGIIIIDEEHEQSYKQ 391


>gi|318056420|ref|ZP_07975143.1| DEAD-box RNA helicase [Streptomyces sp. SA3_actG]
 gi|318077530|ref|ZP_07984862.1| DEAD-box RNA helicase [Streptomyces sp. SA3_actF]
          Length = 473

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 130/318 (40%), Gaps = 33/318 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEA-GGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  GQ  A+++ P   LAQQ  + +  Y ++ ++ +
Sbjct: 91  RGRTGSGKTLAFGLALLARTAGKRAEAGQPLALVLVPTRELAQQVTDALTPYARSVRLRL 150

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRFG 407
             + G MP   +  AL R     A +++ T    +D I     +  ++ + ++DE     
Sbjct: 151 ATVVGGMPIGRQATALRR----GAEVLVATPGRLKDLIDRGHCRLDQVAVTVLDEAD--- 203

Query: 408 VQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                ++T     P V  LL    P  + ++ ++  D ++  +  +     P+   + P 
Sbjct: 204 -----QMTDMGFMPQVTALLDQVCPGGQRMLFSATLDRNVDLLVRRYL-NDPVVHSVDPS 257

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--FRSVVERFNSLHEHFTSS---IAI 520
                 +E   V+   G   + I  +I  +      F       + L EH   S    A 
Sbjct: 258 AGAVTTMEH-HVLHVHGADKHAIATEIAARDGRVLLFLDTKHAVDRLTEHLLRSGVRAAA 316

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG  S   +   ++ FK G   +L+AT V   GI V D  +++  +        LH+  
Sbjct: 317 LHGGKSQPQRTRTLEQFKTGHVSVLVATNVAARGIHVDDLDLVVNVDPPTDHKDYLHR-G 375

Query: 581 GRVGRGEEISSCILLYHP 598
           GR  R     S   L  P
Sbjct: 376 GRTARAGRSGSVATLVTP 393


>gi|195326619|ref|XP_002030023.1| GM24798 [Drosophila sechellia]
 gi|194118966|gb|EDW41009.1| GM24798 [Drosophila sechellia]
          Length = 786

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 134/322 (41%), Gaps = 47/322 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   +  M   V    Q         +I+AP   L+ Q Y   KK+ +   + V 
Sbjct: 312 TGSGKTAAFIWPMLMHVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVV 371

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRF-- 406
              G   +  + KALE+     A II+ T     D ++       ++  +++DE  R   
Sbjct: 372 CCYGGGSKWEQSKALEQ----GAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFH 427

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPR--TLVLTSLGD-IDISKITEKPAGRKPIKT 460
            G + +++       P    L+ +AT   R   L    L D + I +     A +   ++
Sbjct: 428 MGFEPQVRSICNHVRPDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQS 487

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           V +   P+ + + ++  L   LSEG    ++  +++ +  SN   +++ +N L       
Sbjct: 488 VYVFPNPLQKWNWLLCHLVKFLSEGSVLIFVTKKVDAETVSN-NLLIKEYNCL------- 539

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA--- 574
             ++HG M   D+  V+  FK   C +L+AT V   G+D     I  I N  ++  A   
Sbjct: 540 --LLHGDMDQADRNKVITQFKRKECDILVATDVAARGLD-----IPHIRNVVNYDTARDI 592

Query: 575 QLHQLR-GRVGRGEEISSCILL 595
           + H  R GR GR  E  +   L
Sbjct: 593 ETHTHRIGRTGRAGEKGNAFTL 614


>gi|182419538|ref|ZP_02950787.1| ATP-dependent RNA helicase [Clostridium butyricum 5521]
 gi|237668934|ref|ZP_04528918.1| dead/deah box helicase domain protein [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376573|gb|EDT74148.1| ATP-dependent RNA helicase [Clostridium butyricum 5521]
 gi|237657282|gb|EEP54838.1| dead/deah box helicase domain protein [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 408

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 182/404 (45%), Gaps = 57/404 (14%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N++  I + + +     PT  Q +AI   +++         I +   GSGKTL  L+ +
Sbjct: 7   LNLDSNIIEGLKKQGITDPTSIQATAITPAMENKDV------IGEAFTGSGKTLAYLLPI 60

Query: 315 AAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI--ITGNMPQAHRRKALE 369
              ++      QA+++AP   LA Q    IK   +N+ + V    + G++   ++ K L+
Sbjct: 61  FHKIDTSKREMQAIVLAPTHELALQIEAQIKLLAENSSVPVTSFSVIGDVNINNQIKKLK 120

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRFGVQQRLKLTQ---KATAP 421
            I   + HII+G+     D I+  K+       +++DE       +R ++T+   K T  
Sbjct: 121 EI---KPHIIVGSTGRILDLIRKKKITAHTIKTIVIDEGDNLLDPKRAQITKDIIKTTMR 177

Query: 422 --HVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKTVIIPINRID--EVIERL 475
              +L+ +A+  P TL+     + +  I K  EK      I+ ++   +R D  E + ++
Sbjct: 178 DRQLLVFSASIKPETLLTCERLMKEPVIIKSEEKAEMNPNIEHMLFVCDRRDKFETLRKI 237

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            +V ++ +KA       E+ + +  +        L+ H     A+ +G +S  D++  ++
Sbjct: 238 -IVAAKPEKAIVFVNSNEDIEMTTAK--------LNFHSKDCFAM-NGHISKEDRKLAIE 287

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQLHQLRGRVGRGEEIS 590
           SF+NG  K+L+++ V   G+DV   + I      H  L       LH+  GR  RG    
Sbjct: 288 SFRNGKIKILVSSDVTARGLDVEGVTHIF-----HLDLPLKVNEYLHRA-GRTARGNNTG 341

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
             I +        +  +L+++K  E  F I  E+ K+   G+IL
Sbjct: 342 ISIAIA-------TVKQLNIIKKYEKEFNIKFEE-KEAFGGKIL 377


>gi|85711526|ref|ZP_01042584.1| Primosomal protein A (replication factor Y), superfamily II
           helicase [Idiomarina baltica OS145]
 gi|85694678|gb|EAQ32618.1| Primosomal protein A (replication factor Y), superfamily II
           helicase [Idiomarina baltica OS145]
          Length = 731

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 24/186 (12%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q  L   P +  + Q  A+  I Q     + +L   +G  GSGKT V L A+   + AG 
Sbjct: 192 QMALSEEPLAVNQEQAVALSAIKQISGHASFLL---EGVTGSGKTEVYLQAIEHVLAAGR 248

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++ P IG+  Q     IK++ Q   + VE++  N+    R  A       +A I+IG
Sbjct: 249 QVLVLVPEIGLTMQT----IKRFRQRFDVPVEVLHSNLNDTERLHAWLNSRSNRAGIVIG 304

Query: 382 TH-ALFQDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTAT 429
           T  A+F     +  L +++VDE+H    +Q+           +K  Q    P ++L +AT
Sbjct: 305 TRSAIF---TPFADLGMIVVDEEHDLSYKQQDGFRYHARDIAIKRAQLLDIP-IILGSAT 360

Query: 430 PIPRTL 435
           P   TL
Sbjct: 361 PALETL 366


>gi|229526460|ref|ZP_04415864.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
 gi|229336618|gb|EEO01636.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
          Length = 437

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 116/278 (41%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E +        +    + G
Sbjct: 66  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTPLGLNTLCLCG 125

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +  ++ AL        +I++ T      L Q  +   ++  +++DE  R        
Sbjct: 126 GVDKTEQQNALAE----NPNILVATTGRLLDLTQSGLSLSRVTTLVLDEADR-------- 173

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 174 LLDMGFWPQVQALASQTAGVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAV 233

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSSIAI---IHGRMS 526
           +    ++++G K   +   +++        F    E  +SL +    +  +   +HG  S
Sbjct: 234 QETLYLVNKGSKTQALVALLKQNPWPQVLVFIGAKENADSLTKKLNKAGVVATALHGDKS 293

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +E+ +  FKNGT ++LIAT ++  GI +    ++I
Sbjct: 294 QAQREAALAEFKNGTTQVLIATDLLARGIHIEQLPVVI 331


>gi|225627526|ref|ZP_03785563.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo]
 gi|225617531|gb|EEH14576.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo]
          Length = 549

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 128/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 176 RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 231

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 232 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 283

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 284 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 331

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 332 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 391

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV  +S ++  +        +H++ GR GR     + I LY P
Sbjct: 392 DGTLRILVATDIAARGIDVPGSSHVVNYDPPDEPETYVHRI-GRTGRNGASGASITLYDP 450


>gi|328545833|ref|YP_004305942.1| priA family helicase (Primosomal protein N', replication factor Y)
           [polymorphum gilvum SL003B-26A1]
 gi|326415573|gb|ADZ72636.1| Putative priA family helicase (Primosomal protein N', replication
           factor Y) [Polymorphum gilvum SL003B-26A1]
          Length = 731

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 9/135 (6%)

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQ 336
           ++A+   L     +   + ++ G  GSGKT V   A+A AV  G QAV++ P I + AQ 
Sbjct: 203 QAAVATGLVAAFDRGYAVSLIDGVTGSGKTEVYFEAVAEAVRRGRQAVVLVPEISLTAQ- 261

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKL 395
              F+K++ Q   ++       +    R +    +A G   +++G   ALF   + +++L
Sbjct: 262 ---FLKRFEQRFGVLPAEWHSEVAPRRRARVWRGVASGDVRVVVGARSALF---LPFHEL 315

Query: 396 ILVIVDEQHRFGVQQ 410
            L++VDE+H    +Q
Sbjct: 316 GLIVVDEEHDTAFKQ 330


>gi|170760702|ref|YP_001787100.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407691|gb|ACA56102.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 421

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 159/336 (47%), Gaps = 46/336 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT+ Q  AI      ++ +N+ + I Q + G+GKTL  L+ +   +       QA+I+AP
Sbjct: 26  PTEIQAEAI-----PLAMENKDI-IGQSETGTGKTLAYLLPIFEKITTEKREMQAIILAP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q    IK  + N+ I V+ +   + +A+ ++ +E++   + HII+G+     + 
Sbjct: 80  THELAMQINNEIKNISSNSNIDVKSM-AIIGEANIKRQIEKLKE-KPHIIVGSPGRILEL 137

Query: 390 IQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTATPIPRTLVLTS 439
           I+  K+       +++DE  +   +  LK+ ++          ++L +AT    TL +  
Sbjct: 138 IKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLMLFSATITESTLNIAK 197

Query: 440 --LGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKVVLSEGKKAYWICPQIEE 494
             + D ++ K+ EK    + IK + I      RI E++ +L +  +  K+A     + EE
Sbjct: 198 DLMKDSEVVKVKEKNTVNENIKHLYITGEHRERI-EILRKL-IAATNPKRAIVFINRNEE 255

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            + +  +        L  H   +  I +G      ++  ++ F++G  ++L+++ +   G
Sbjct: 256 IELTTLK--------LQYHKIKAYGI-YGAAEKEQRKKALEDFRSGKVQILVSSDLSARG 306

Query: 555 IDVVDASII----IIENAEHFGLAQLHQLRGRVGRG 586
           +DV D + I    + EN + +    LH++ GR GR 
Sbjct: 307 LDVKDVTHIFNLDLPENPKEY----LHRV-GRTGRA 337


>gi|169769538|ref|XP_001819239.1| ATP-dependent RNA helicase dbp3 [Aspergillus oryzae RIB40]
 gi|91206543|sp|Q2UMH8|DBP3_ASPOR RecName: Full=ATP-dependent RNA helicase dbp3
 gi|83767097|dbj|BAE57237.1| unnamed protein product [Aspergillus oryzae]
          Length = 498

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 138/345 (40%), Gaps = 47/345 (13%)

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQI 350
            + GSGKTL   +     ++             AVI++P   LA Q Y+ + K++ +  +
Sbjct: 124 AETGSGKTLAFGLPCLKKIQDSAMTKQKPYRPLAVIISPTRELAMQIYDQLLKFSGSVGV 183

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR 405
            V  + G + +  +R+AL+      A +++ T    +D     S+   K+  +++DE  R
Sbjct: 184 RVACVFGGVRKEEQREALK-----TAGVVVATPGRLKDLQNDGSVDLGKVKYLVLDEADR 238

Query: 406 F---GVQQRLK---LTQKATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKP 457
               G +Q +K        +    ++ TAT  P  R L  T +       I   P+    
Sbjct: 239 MLDKGFEQDIKDIIRPMPVSKRQTIMFTATWPPSVRDLASTFMSSPVTVTIGGDPSADPR 298

Query: 458 IKTVIIPI----------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             T I  +          +R+ +++ R +  + E +K    C          ++    R 
Sbjct: 299 ANTRIKQVVEVVKPHEKESRLVQLLNRSQRGVPEPEKVLAFC---------LYKKEAMRI 349

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L       +A IHG +S  ++   +D+FK G   +L+AT V   G+D+     +I   
Sbjct: 350 ERLLRTKGFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPSVKQVINVT 409

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
                   +H++ GR GR       + L+       S   ++VL+
Sbjct: 410 FPLTVEDYVHRI-GRTGRAGAEGHAVTLFTETDKAQSGALINVLR 453


>gi|153948144|ref|YP_001399116.1| primosome assembly protein PriA [Yersinia pseudotuberculosis IP
           31758]
 gi|152959639|gb|ABS47100.1| primosomal protein n' [Yersinia pseudotuberculosis IP 31758]
          Length = 732

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 26/207 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+I+ P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENILAQGRQALILVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
              +  + R     R   G+A I+IGT  ALF     + +L ++I+DE+H          
Sbjct: 277 HSGLNDSERLSVWLRARSGEAAIVIGTRSALF---TPFSRLGVIIIDEEHDSSYKQQEGW 333

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP------- 457
           R+  +       +     +++ TATP   TL    +G      +T++    KP       
Sbjct: 334 RYHARDLAVFRAREEGIPIVMGTATPALETLHNVQMGKYRQLTLTKRAGSAKPAAQHLLD 393

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKK 484
           +K + + +     +++R+K  L  G +
Sbjct: 394 LKGLPLKVGLSQPLLKRMKTHLQAGNQ 420


>gi|238880613|gb|EEQ44251.1| ATP-dependent RNA helicase DDX19B [Candida albicans WO-1]
          Length = 537

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 157/365 (43%), Gaps = 51/365 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+K QE A+  +L +  +      I Q   G+GKT    + M + V+      Q + ++P
Sbjct: 170 PSKIQEKALPLLLSNPPRN----MIGQSQSGTGKTAAFSLTMLSRVDPTIKMPQCLCLSP 225

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E I    + T I  +++  N        A+ R +   A +++GT  +  D 
Sbjct: 226 TRELARQTLEVITTMGKFTNITTQLVVPN--------AIPRGSSVNAQVLVGTPGIAIDL 277

Query: 390 IQ-----YYKLILVIVDEQHRFGVQQRL---KLTQKATAP---HVLLMTAT-PIP-RTLV 436
           I+       K+ + ++DE       Q L    +  K   P    ++L +AT P   R   
Sbjct: 278 IRRRQLNLSKMKVFVLDEADNMLEAQGLGDQAIRVKKFLPRGVQLVLFSATFPTEVREYA 337

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRID---EVIERLKVVLSEGKKAYWICPQIE 493
              + D +  ++ ++      IK + +         EV+  L  +L+ G    ++     
Sbjct: 338 ERLVPDANSLELKQEELNVDGIKQLYMDCRSEQHKFEVLCELYGLLTIGSSIIFV----- 392

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           EKKE+      +      +    +++++HG + + D++ ++D F+ G  K+LI T V+  
Sbjct: 393 EKKET-----ADVLYGKMKKEGHTVSVLHGGLDNTDRDRLIDDFREGRSKVLITTNVLAR 447

Query: 554 GIDVVDASIIIIEN--AEHFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           GID+   S+++  +   + +G       LH++ GR GR   +   I   H    + SY  
Sbjct: 448 GIDIASVSMVVNYDMPTDKYGKPDPSTYLHRI-GRTGRFGRVGVSISFIH---DRRSYDI 503

Query: 608 LSVLK 612
           L  +K
Sbjct: 504 LMAIK 508


>gi|237734407|ref|ZP_04564888.1| helicase [Mollicutes bacterium D7]
 gi|229382637|gb|EEO32728.1| helicase [Coprobacillus sp. D7]
          Length = 448

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 135/320 (42%), Gaps = 46/320 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITG 357
            G+GKT   L+ +   ++      QAVI AP   LA Q Y   K +T+ N++I V +I G
Sbjct: 40  TGTGKTHAFLLPVMDRIDPKNNSVQAVITAPTRELATQIYNNAKLFTKYNSEIKVSLIVG 99

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQD------SIQYYKLILVIVDEQH---RFGV 408
                 R+K + ++A  Q H++IGT    +D      +++       IVDE      FG 
Sbjct: 100 G---NDRQKTVNKLAV-QPHVVIGTPGRIKDLSLDEQALKITTASTFIVDEADMTLEFGY 155

Query: 409 QQRLKLTQKATAPHVLLMT-ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT-VIIPIN 466
            + +          + +M  +  IP+ L               +P  +K +K+ V++ I+
Sbjct: 156 LEDIDAVAGKMRDDLRMMVFSATIPQML---------------RPFLKKYMKSPVLVEID 200

Query: 467 RIDEVIERLKVVL--SEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSS 517
                 E ++ +L  ++ K  Y +  +I E  +       +N RS V             
Sbjct: 201 DDKVTTENVEHILIATKHKNRYEVLKKIIESIDPYVCIIFANTRSDVASTTKKLREDGFK 260

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +  IHG +   +++ +M   +N   + ++AT +   GID+   S +I  N E       +
Sbjct: 261 VGEIHGDLEPRERKQMMRRIQNNEYQFIVATDIAARGIDIDGVSHVI--NMEFPKEPDFY 318

Query: 578 QLR-GRVGRGEEISSCILLY 596
             R GR GRG     C  +Y
Sbjct: 319 IHRSGRCGRGNYTGICYSMY 338


>gi|145632588|ref|ZP_01788322.1| primosome assembly protein PriA [Haemophilus influenzae 3655]
 gi|145634663|ref|ZP_01790372.1| primosome assembly protein PriA [Haemophilus influenzae PittAA]
 gi|229844570|ref|ZP_04464710.1| primosome assembly protein PriA [Haemophilus influenzae 6P18H1]
 gi|144986783|gb|EDJ93335.1| primosome assembly protein PriA [Haemophilus influenzae 3655]
 gi|145268208|gb|EDK08203.1| primosome assembly protein PriA [Haemophilus influenzae PittAA]
 gi|229812819|gb|EEP48508.1| primosome assembly protein PriA [Haemophilus influenzae 6P18H1]
          Length = 730

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/389 (20%), Positives = 157/389 (40%), Gaps = 94/389 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +++G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 222 LLDGVTGSGKTEIYLQYIEEILKSGKQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 277

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
             N+    R    +R   GQ+ I+IGT  ALF    Q+  L  +I+DE+     +Q+   
Sbjct: 278 HSNLTDTQRLYVWDRARSGQSAIVIGTRSALF---TQFSNLGAIILDEEQDASYKQQDSW 334

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                   + L QK     VL+ +ATP   ++     G      ++++      ++  +I
Sbjct: 335 RYHARDLAIVLAQKLNIA-VLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVI 393

Query: 464 PINRID-------EVIERLKVVLSEGKKAY------------------WI--CPQIEEKK 496
            +   +        ++ER+K  L +G +                    WI  CP  E+  
Sbjct: 394 DLKNQNIQNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPY 453

Query: 497 ESNFRSVVERFN----------------SLH--------EHFTSSIAII--HGRMSDIDK 530
             +    V R +                S H        E    ++  +  H  ++ ID+
Sbjct: 454 TYHQHQNVLRCHHCGAQKTIPRQCGDCGSTHLVTTGLGTEQLEETLKTLFPHYSVARIDR 513

Query: 531 ESV---------MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH--FG------- 572
           +S          ++  + G  ++LI T ++  G  + + +++ + N +   F        
Sbjct: 514 DSTARKGKLEGYLEDIQKGKSQILIGTQMLAKGHHLPNVTLVALVNVDSALFSLDFRAEE 573

Query: 573 -LAQLH-QLRGRVGRGEEISSCILLYHPP 599
            LAQL+ Q+ GR GR ++    +L  H P
Sbjct: 574 RLAQLYIQVAGRAGRADKQGEVVLQTHYP 602


>gi|60551791|gb|AAH90996.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Mus musculus]
          Length = 734

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 137/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 175 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 234

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     + +I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 235 LSVAC-FYGGTSYQSQ----INQIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 288

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 289 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 343

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 344 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 397

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 398 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 453

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      C+  Y P
Sbjct: 454 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICVCFYQP 491


>gi|16716475|ref|NP_444413.1| ATP-dependent RNA helicase DDX50 [Mus musculus]
 gi|55976576|sp|Q99MJ9|DDX50_MOUSE RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
           box protein 50; AltName: Full=Gu-beta; AltName:
           Full=Nucleolar protein Gu2
 gi|13540306|gb|AAK29403.1|AF334104_1 nucleolar protein GU2 [Mus musculus]
          Length = 734

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 137/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 175 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 234

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     + +I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 235 LSVAC-FYGGTSYQSQ----INQIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 288

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 289 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 343

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 344 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 397

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 398 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 453

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      C+  Y P
Sbjct: 454 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICVCFYQP 491


>gi|150008034|ref|YP_001302777.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
 gi|149936458|gb|ABR43155.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
          Length = 426

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 146/354 (41%), Gaps = 68/354 (19%)

Query: 278 ESAIKDILQDMS-------QKNRMLRILQG-------DVGSGKTLVALIAMAAAVEAGG- 322
           E A+ D L DM+       Q+  +  IL+G         G+GKT   ++ +   +  G  
Sbjct: 9   EDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINELSKGCH 68

Query: 323 -----QAVIMAPIGILAQQHYEFIKKYT----QNTQIIVEIITGNMPQAHRRKALERIAH 373
                 AVIMAP   LAQQ  + I+ +T      + + V   T  +    +++ LE  A 
Sbjct: 69  PTDAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGAD 128

Query: 374 ------GQ--AHIIIGTHALFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPH 422
                 G+  +HI +GT       +   K+   ++DE  R    G    +    K   P+
Sbjct: 129 IVIATPGRLLSHIKLGT-------VDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPY 181

Query: 423 V--LLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
              ++ +AT  P  RTL  T L D +  KI                I+R  E I +   +
Sbjct: 182 CQTIMFSATMPPKIRTLAKTILKDPEEVKIA---------------ISRPPESIMQTAYI 226

Query: 479 LSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
             + +K   +     + +       S+ +  V+   S  +    ++A +H  +    +E 
Sbjct: 227 CYDPQKLKILQDLFTQSRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREE 286

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           VM  FK+G   +L+AT V+  GID+ D  +++  +  H     +H++ GR  RG
Sbjct: 287 VMKEFKSGHIDILVATDVVARGIDINDIKLVVNFDIPHDPEDYVHRI-GRTARG 339


>gi|119481045|ref|XP_001260551.1| RNA helicase (Dbp), putative [Neosartorya fischeri NRRL 181]
 gi|134034066|sp|A1DGZ7|DBP2_NEOFI RecName: Full=ATP-dependent RNA helicase dbp2
 gi|119408705|gb|EAW18654.1| RNA helicase (Dbp), putative [Neosartorya fischeri NRRL 181]
          Length = 545

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 145/343 (42%), Gaps = 53/343 (15%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +I+AP   LA Q    I K+ ++++I  
Sbjct: 164 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQTEISKFGKSSRIRN 223

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR-- 405
             + G +P+  + + L R       + I T     D ++       ++  +++DE  R  
Sbjct: 224 TCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRML 279

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
              F  Q R  ++Q           AT P  +   AT      +  ++G +D+S   +IT
Sbjct: 280 DMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRIT 339

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           +       I  V+    + D++I+ L K++ + G K            E      + RF 
Sbjct: 340 Q-------IVEVVSDFEKRDKMIKHLEKIMENRGNKCLIFTGTKRIADE------ITRF- 385

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D + ++  + 
Sbjct: 386 -LRQDGWPALSI-HGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDY 443

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            +     +H++ GR GR     + I  +    SK +   +++L
Sbjct: 444 PNNSEDYIHRI-GRTGRAGAKGTAITFFTTENSKQARDLVTIL 485


>gi|115645582|ref|XP_001201765.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115666529|ref|XP_786714.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 492

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 155/359 (43%), Gaps = 86/359 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
           +P+K QE+A+  ++ D   KN    I Q   G+GKT   ++ M + V+     QA+ +AP
Sbjct: 122 APSKIQETALPLLMAD-PPKNM---IAQSQSGTGKTAAFVLTMLSRVDNNHYPQALCLAP 177

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL--ERIAHGQA---HIIIGTHA 384
              LA Q    I K       +VE +  N+P  + R A+  +R+  G+     IIIGT  
Sbjct: 178 TYELAIQ----IGK-------VVEEMGKNLPDINVRYAVRGQRVQRGEKVNQQIIIGTPG 226

Query: 385 LFQD------SIQYYKLILVIVDEQHRF----GVQ-QRLKLTQK-ATAPHVLLMTATPIP 432
              D      SI   ++ +  +DE        G Q Q +++ +K  +A  ++L +AT   
Sbjct: 227 TTLDWCLKLRSIDLSRMKVFCLDEADVMIATQGHQDQSIRIQKKLPSACQMMLFSATY-- 284

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK---VVLSEGKKAYWIC 489
                    D  + K            T ++P    D V+ RL+     LS  K+ Y +C
Sbjct: 285 ---------DNTVMKFA----------TTVVP----DPVVIRLRREEESLSNIKQYYVLC 321

Query: 490 PQIEEKKESN--------------FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKES 532
              EEK ES               F       N L E  T    ++A++ G ++   + +
Sbjct: 322 SNKEEKAESLSNIYGTITIGQAMIFCQTKRNANWLAERMTREGHAVALLSGDLTVEQRVA 381

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASII------IIENAEHFGLAQLHQLRGRVGR 585
           V++ ++ G  K+LI T V+  GID+   +++      +  N +      LH++ GR GR
Sbjct: 382 VLERYRAGKEKILITTNVMARGIDIEQVTVVVNFDLPVDMNGQADCETYLHRI-GRTGR 439


>gi|315122947|ref|YP_004064953.1| DNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315016707|gb|ADT70044.1| DNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 1058

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 17/162 (10%)

Query: 290 QKNRMLRILQGDVGSGKTL--VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           ++N++  IL  D+G GKTL  +A +A +      G  +I+ P  +++    E I K+ ++
Sbjct: 615 KRNQLGGILADDMGLGKTLQVIAYLASSYNTPQAGPTLIVCPTSLVSNWQNE-ITKFAKS 673

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL---VIVDEQH 404
            +  V  I G    AHR  +L+ +A  QA  I+ T+ L +  I YY  +    +I+DE  
Sbjct: 674 LK--VTTIFG----AHRNDSLQHLA--QAQCILTTYPLLKRDIAYYSPLYFENIILDEAQ 725

Query: 405 --RFGVQQRLKLTQKATAPHVLLMTATPIPRTLV-LTSLGDI 443
             +    Q  +L ++  A   L ++ TPI   L  L SL D 
Sbjct: 726 YIKNDTAQVSRLVKRLNADFKLCLSGTPIENNLFELKSLLDF 767


>gi|242822575|ref|XP_002487915.1| eukaryotic translation initiation factor 4, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218712836|gb|EED12261.1| eukaryotic translation initiation factor 4, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 397

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 130/301 (43%), Gaps = 62/301 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    +++     QA+I+AP   LAQQ  + +        I   
Sbjct: 65  IAQAQSGTGKTATFSISALQKIDSSLKACQALILAPTRELAQQIQKVVVAIGDFMSIECH 124

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        KAL+        +++GT    QD IQ   L        +L   DE   
Sbjct: 125 ACIGGTNVREDMKALQ----DGPQVVVGTPGRVQDMIQRRVLRTDNIKMFVLDEADEMLS 180

Query: 406 FGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G  +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P++ +
Sbjct: 181 RGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPVRIL 226

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------R 506
           +    + DE+         EG K ++I  + EE K      + E               +
Sbjct: 227 V----KKDELT-------LEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 275

Query: 507 FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++
Sbjct: 276 VDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 335

Query: 564 I 564
           I
Sbjct: 336 I 336


>gi|254469871|ref|ZP_05083276.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062]
 gi|211961706|gb|EEA96901.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062]
          Length = 476

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 154/364 (42%), Gaps = 56/364 (15%)

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +++K+L  +  S    PT  Q  AI  +L+    +  +L I Q   G+GKT    + M  
Sbjct: 8   LSEKVLAAVEASGYTEPTAIQAGAIPYVLE----RRDVLGIAQ--TGTGKTASFTLPMIT 61

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q  +   +Y  N ++ V ++ G +  A + + LER
Sbjct: 62  LLEKGRARARMPRTLILEPTRELAAQVEDNFNRYGVNHKLNVALLIGGVSFAEQDRKLER 121

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-L 424
                A ++I T     D  +  KL+L     +++DE  R        +      P +  
Sbjct: 122 ----GADVLIATPGRLLDHFERGKLLLQGVDILVIDEADR--------MLDMGFIPDIER 169

Query: 425 LMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE-VIERLKVVLSEG 482
           +    P  R TL  ++    +I ++T+    + P K  +   +   E V +R+     E 
Sbjct: 170 ICKLIPFTRQTLFFSATMPSEIQRLTDTFL-QNPAKVEVAKASTTAETVTQRIAAAEPED 228

Query: 483 KKAYWICPQIEEKKE---------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            +      ++ E  E         +  R V   F SL  H   S+  +HG M    + ++
Sbjct: 229 YEKRAKLRELIEGAEDLQNAIVFCNRKRDVATLFRSLVRH-EFSVGALHGDMDQRSRMTM 287

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN----AEHFGLAQLHQLRGRVGRGEEI 589
           +D+FK G  K+L+A+ V   G+D+   S +   +    AE +    +H++ GR GR    
Sbjct: 288 LDNFKKGNIKILVASDVAARGLDIPSVSHVFNFDLPIQAEDY----VHRI-GRTGRAGRD 342

Query: 590 SSCI 593
            + I
Sbjct: 343 GTAI 346


>gi|148700135|gb|EDL32082.1| mCG141508, isoform CRA_a [Mus musculus]
          Length = 624

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 137/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 110 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 169

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     + +I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 170 LSVAC-FYGGTSYQSQ----INQIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 223

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 224 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 278

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 279 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 332

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 333 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 388

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      C+  Y P
Sbjct: 389 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICVCFYQP 426


>gi|59713567|ref|YP_206342.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481815|gb|AAW87454.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 634

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 38/292 (13%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+IMAP   LA Q    +K   +N + + V  I G      + +AL R     AHII+G
Sbjct: 76  QAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALSR----GAHIIVG 131

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFG-VQQRLKLTQKA--TAPHVLL-MTAT 429
           T    +D +   +L        IL   DE  + G V     + +KA  TA  +L   T  
Sbjct: 132 TPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDTAQRILFSATMP 191

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLS-EGKKAYW 487
           P+ +T+V   L              R+P +  +   N  +D+V +   VV   E  +A  
Sbjct: 192 PMVKTIVDRYL--------------REPARVDVAGTNHTVDKVEQNFWVVKGVEKDEAMS 237

Query: 488 ICPQIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
              + EE   S      R   ER            A +HG +    +E  +D+ KNG   
Sbjct: 238 RLLETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVID 297

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +L+AT V+  G+DV   + +   +      + +H++ GR GR       ILL
Sbjct: 298 ILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILL 348


>gi|51594459|ref|YP_068650.1| primosome assembly protein PriA [Yersinia pseudotuberculosis IP
           32953]
 gi|170026306|ref|YP_001722811.1| primosome assembly protein PriA [Yersinia pseudotuberculosis YPIII]
 gi|186893448|ref|YP_001870560.1| primosome assembly protein PriA [Yersinia pseudotuberculosis PB1/+]
 gi|51587741|emb|CAH19341.1| primosomal protein n [Yersinia pseudotuberculosis IP 32953]
 gi|169752840|gb|ACA70358.1| primosomal protein N' [Yersinia pseudotuberculosis YPIII]
 gi|186696474|gb|ACC87103.1| primosomal protein N' [Yersinia pseudotuberculosis PB1/+]
          Length = 732

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 26/207 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+I+ P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENILAQGRQALILVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
              +  + R     R   G+A I+IGT  ALF     + +L ++I+DE+H          
Sbjct: 277 HSGLNDSERLSVWLRARSGEAAIVIGTRSALF---TPFSRLGVIIIDEEHDSSYKQQEGW 333

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP------- 457
           R+  +       +     +++ TATP   TL    +G      +T++    KP       
Sbjct: 334 RYHARDLAVFRAREEGIPIVMGTATPALETLHNVQMGKYRQLTLTKRAGSAKPAAQHLLD 393

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKK 484
           +K + + +     +++R+K  L  G +
Sbjct: 394 LKGLPLKVGLSQPLLKRMKTHLQAGNQ 420


>gi|253580143|ref|ZP_04857410.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848662|gb|EES76625.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 739

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 20/208 (9%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           R +P   T  QE+A+K I ++  + +    +++G  GSGKT V +  +   +  G +A++
Sbjct: 203 RRMPL--TDEQEAAVKQIQREWKKPSPKPVLIEGVTGSGKTQVYIKLIEQTLSQGKEAIV 260

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-AL 385
           + P   L    Y+ ++++       V +I     Q  R    +R   G+  ++IG   AL
Sbjct: 261 LIPEIALT---YQTVRRFYARFGDKVSVINSRQSQGERYDQFKRAKKGEVQVMIGPRSAL 317

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQ--------RLKLTQKATAPH--VLLMTATPIPRTL 435
           F     +  L L+I+DE+H    +         R    ++A   H  V++ +ATP     
Sbjct: 318 F---TPFASLGLIIIDEEHEPSYKSESTPRYHARETAIRRAVLEHANVVMGSATPSVEAY 374

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVII 463
                G+  + ++T +  G +P+  V I
Sbjct: 375 SKAMNGEYSLVRLTTR-YGSRPLPRVSI 401


>gi|87198262|ref|YP_495519.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM
           12444]
 gi|87133943|gb|ABD24685.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 498

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 142/336 (42%), Gaps = 60/336 (17%)

Query: 261 IAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT----LVALI 312
           +A+ ILR +       PT  Q  AI  +L+       +L I Q   G+GKT    L +L 
Sbjct: 9   LAEPILRALETKGYNDPTPIQRQAIPALLEGRD----LLGIAQ--TGTGKTAAFALPSLH 62

Query: 313 AMAAAVE----AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
            +AA  +    A  + ++++P   LA Q  + +K Y +N  +IV+ + G +P     K  
Sbjct: 63  RLAANPQPRKPASCRMLVLSPTRELAAQIADNMKGYARNLNLIVDCVFGGVPIG---KQA 119

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
            R+  G   I++ T     D I    L L      ++DE       Q + L       H 
Sbjct: 120 RRLVPG-VDILVATPGRLLDLIDNRALTLGRTEIFVLDE-----ADQMMDLGFI----HA 169

Query: 424 LLMTATPIPRT--------LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           L   A  +P+T         +  ++ D+    I        P++  + P +   E +E+ 
Sbjct: 170 LKRVANLLPKTRQSLFFSATMPKAIEDLGKQFIV------NPVRVEVAPNSTTAERVEQY 223

Query: 476 KVVLSEGKKAYWICPQIEE---KKESNFRSVVER----FNSLHEHFTSS---IAIIHGRM 525
              +++ +K   +  +I +    KE +   V  R     + +  H +S+      IHG  
Sbjct: 224 VTFINQAEKQALLTLRIRDLLKTKELDRALVFTRTKHGADRVVRHLSSAGIDARAIHGNK 283

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           S   + + +++F+ G+C +L+AT +   GIDV   S
Sbjct: 284 SQAQRTAALEAFRQGSCPVLVATDIAARGIDVSGVS 319


>gi|294507693|ref|YP_003571751.1| ATP-dependent DNA helicase RecQ [Salinibacter ruber M8]
 gi|294344021|emb|CBH24799.1| ATP-dependent DNA helicase RecQ [Salinibacter ruber M8]
          Length = 649

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 123/318 (38%), Gaps = 46/318 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G GK+L   +    AV   G  ++++P+  L Q   E +    Q   I    I   +P 
Sbjct: 48  TGGGKSLCYQLP---AVLGDGFVLVVSPLIALMQDQVEAL----QAQGIAATFINSTLPG 100

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQRLK 413
               +      HGQ  ++          +FQ   +   + L+ VDE H    +G   R  
Sbjct: 101 YEVEQRWTNAEHGQYDLVYMAPERFATEVFQARAERLDVSLMAVDEAHCASEWGHHFRPD 160

Query: 414 L-------TQKATAPHVLLM-TATPIPRT--LVLTSLGD-IDISKITEKPAGRKPIKTVI 462
                    Q  T P V L  TATP  R   L L  L D +++ +  ++P        + 
Sbjct: 161 YLQIPDARAQLGTPPTVALTATATPAVREDILELLELPDAVEVVRGFDRP-------NIT 213

Query: 463 IPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             + R D+  ERL+ V+    G    ++            R    R+    +    S+A+
Sbjct: 214 WSVFRTDKKWERLRAVVDAVPGTGIVYV----------PTRRDAARWRKRLDAHGVSVAV 263

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +    +E    ++ +   ++++AT    +GID  D    ++  A    L   +Q  
Sbjct: 264 YHGGLDSEAREHRQQAWVDDDVRVMVATNAFGMGIDKPDVR-FVVHMAPPSSLESYYQEA 322

Query: 581 GRVGRGEEISSCILLYHP 598
           GR GR  + +  +LLY P
Sbjct: 323 GRAGRDGKQAHAVLLYQP 340


>gi|254438889|ref|ZP_05052383.1| DbpA RNA binding domain family [Octadecabacter antarcticus 307]
 gi|198254335|gb|EDY78649.1| DbpA RNA binding domain family [Octadecabacter antarcticus 307]
          Length = 702

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 148/361 (40%), Gaps = 60/361 (16%)

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIG 331
           +++   D + + R L ++    GSGKTL   IA+A ++    +         A+++AP  
Sbjct: 20  VQEACSDPALEGRDL-LVSAQTGSGKTLGFGIAIAQSLLGDAERFDRADAPLALVIAPTR 78

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD--- 388
            LA Q    ++   + T  ++    G M     R+AL R     AHI++ T    +D   
Sbjct: 79  ELALQVKRELEWLYEKTGAVIASTVGGMDMRDERRALGR----GAHIVVSTPGRLRDHIM 134

Query: 389 --SIQYYKLILVIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTL------ 435
             SI    L  V++DE       G ++ L+  L +       L+ +AT +P ++      
Sbjct: 135 RKSIDLSSLKAVVLDEADEMLDLGFREDLEFILDESPKDRQTLMFSAT-VPASIAKLAQR 193

Query: 436 -------VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
                  V T+ G+   + I  +          +   +  + +I  L+    E   A   
Sbjct: 194 YQRDAERVATTTGEKQHADIEYR-------AFCVSARDTENAIINVLRYF--EAPNAIVF 244

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C         N R+ V R  +   +   S+  + G +S  ++   + S ++G  ++ +AT
Sbjct: 245 C---------NTRATVNRMTTRLSNRGFSVVALSGELSQSERTHALQSMRDGRARVCVAT 295

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTR 607
            V   GID+ +  ++I           LH+  GR GR G + +S +++  PP  +    R
Sbjct: 296 DVAARGIDLPNLDLVIHAELPTNQDTLLHR-SGRTGRAGRKGTSAMIV--PPAVRKKAER 352

Query: 608 L 608
           L
Sbjct: 353 L 353


>gi|50289021|ref|XP_446940.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661294|sp|Q6FS54|DBP3_CANGA RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49526249|emb|CAG59873.1| unnamed protein product [Candida glabrata]
          Length = 540

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 145/322 (45%), Gaps = 38/322 (11%)

Query: 300 GDVGSGKTL------VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + GSGKT       +  +  +++   G + ++++P   LA Q Y+ +   TQ   I   
Sbjct: 172 AETGSGKTFAFGVPAINNLLTSSSKPKGIKVLVISPTRELASQIYDNLVLLTQKVGIDCC 231

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
           ++ G +P+  +R+ +      ++++++ T     D I+   + L     +++DE  R   
Sbjct: 232 VVYGGVPKDDQRRQI-----AKSNVVVATPGRLLDLIEEGSVDLSPVDYMVLDEADRMLE 286

Query: 407 -GVQQRLKL---TQKATAPHVLLMTATPIP---RTLVLTSLGD---IDISKITEKPAGRK 456
            G ++ +K      K+     L+ TAT  P   R L  T + +   + I    E  A ++
Sbjct: 287 KGFEEDIKRIIGQTKSKDRQTLMFTAT-WPKEVRELASTFMKEPVKVSIGNRDELSANKR 345

Query: 457 --PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
              I  V+ P ++  ++++ LK   S  KK   +      KKE+   S VER  + + + 
Sbjct: 346 ITQIVEVVDPRSKERKLLDLLKKYQSGPKKNDKVLIFALYKKEA---SRVERNLNYNGY- 401

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A IHG +S   +   ++ FK+G   LL+AT V   G+D+ +   +I          
Sbjct: 402 --KVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVED 459

Query: 575 QLHQLRGRVGRGEEISSCILLY 596
            +H++ GR GR  +  +   L+
Sbjct: 460 YVHRI-GRTGRAGQTGTAHTLF 480


>gi|260168758|ref|ZP_05755569.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           F5/99]
          Length = 535

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 128/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 162 RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 217

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 218 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 269

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 270 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 317

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 318 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 377

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV  +S ++  +        +H++ GR GR     + I LY P
Sbjct: 378 DGTLRILVATDIAARGIDVPGSSHVVNYDPPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|82703421|ref|YP_412987.1| ATP-dependent DNA helicase RecQ [Nitrosospira multiformis ATCC
           25196]
 gi|82411486|gb|ABB75595.1| ATP-dependent DNA helicase RecQ [Nitrosospira multiformis ATCC
           25196]
          Length = 602

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 132/318 (41%), Gaps = 47/318 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G GK+L   +    A+   G A++++P+  L +   E +++   +   +  ++      
Sbjct: 78  TGGGKSLCYQLP---ALNLPGTAIVVSPLISLMKDQAEKLEEIGVDAAQVNSMLNAE--- 131

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQR-- 411
               +ALE I +  + ++  T     H  F   +Q   + L ++DE H   ++G   R  
Sbjct: 132 -QESEALENIRNADSDVVFVTPERVSHPDFIAELQAIPINLFVIDEAHCISQWGHDFRPA 190

Query: 412 -LKLTQKATA---PHVLLMTATPIPRTL--VLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            L L     A   P VL +TAT  P  +  +   LG   +  +      R  +   ++ +
Sbjct: 191 YLGLGDAIKALGKPTVLALTATATPEVIEDIAQQLGRSSMH-VVNTGIYRPNLNYSVLQV 249

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII---H 522
              +E +E+L+ ++ + + +  I           + + V+    L      +IA I   H
Sbjct: 250 TNPEEKLEKLQDLIQKSQGSGII-----------YTATVKAVEELAAALAGTIADIALYH 298

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF----GLAQLHQ 578
           GR+    +    ++F  G  ++++AT    +GID  D   ++     HF     L   +Q
Sbjct: 299 GRLPRKTRTENQETFMEGKSRIMVATNAFGMGIDKPDIRFVV-----HFQMPGTLEAYYQ 353

Query: 579 LRGRVGRGEEISSCILLY 596
             GR GR  + + C LLY
Sbjct: 354 ESGRAGRDGKTAECTLLY 371


>gi|251796764|ref|YP_003011495.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247544390|gb|ACT01409.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 477

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 136/332 (40%), Gaps = 32/332 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    I +   VE      QA+I+ P   LA Q  E I    +  +I   
Sbjct: 41  VVKSQTGSGKTAAYGIPLCELVEWNENKPQALILTPTRELAVQVTEDITNIGRFKRIKAT 100

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF-- 406
            + G  P   +R  L++    + H+++GT     D I+       KL  +++DE      
Sbjct: 101 ALYGKSPFHIQRAELKQ----RTHMVVGTPGRVLDHIERGTLALDKLAYLVIDEADEMLN 156

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV--- 461
              ++Q   + Q      V ++ +   P  +   S   +D     E  A      T+   
Sbjct: 157 MGFIEQVQSIIQALPKGRVTMLFSATFPEDVAKLSRRYMDSPAQIEIQASGLTTATIEHS 216

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           +I +   D++     V++ E   +  I  + +E  +  FRS+ E               I
Sbjct: 217 LIEVKEADKLALLQDVLVVENPDSCIIFCRTQENVDKLFRSMAE--------LDYPCDRI 268

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG +   ++  VM++F+ G  + LIAT V   GID+ + + +I  +      + +H+  G
Sbjct: 269 HGGLEQEERFEVMNAFRRGQFRYLIATDVAARGIDITNITHVINYDIPLEKESYVHRT-G 327

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           R GR  +    I    P    N   RL+ +++
Sbjct: 328 RTGRAGKNGKAITFLAP----NDGKRLAEIED 355


>gi|192292890|ref|YP_001993495.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192286639|gb|ACF03020.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 691

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 142/329 (43%), Gaps = 46/329 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A  +    +         A+I+AP   LA Q H E    Y  
Sbjct: 40  LVSAQTGSGKTVAYGLAIARDLLGDAEQFAPAAAPLALIVAPTRELALQVHRELSWLYRH 99

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILV 398
               IV  + G  P+  +R+    +A G AHI++GT     D ++  +L        +L 
Sbjct: 100 AGGRIVSCVGGMDPRREQRE----LADG-AHIVVGTPGRLCDHLRRNRLDVSQLKAVVLD 154

Query: 399 IVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV-LTSLGDIDISKITEKPA-- 453
             DE    G ++ ++   + T      LL +AT +PR ++ L      D  +I  + A  
Sbjct: 155 EADEMLDLGFREDMEFILETTPETRRTLLFSAT-LPRGIIALAKTYQHDAMRIEVEGAEG 213

Query: 454 GRKPI--KTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           G   I  + + I  N ++  V+  L+ V  E   A   C         N RS V    + 
Sbjct: 214 GHADIEYRAIRIAPNDVEHAVVNVLRYV--ESPTAIVFC---------NTRSAVNHLQTA 262

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 ++  + G ++  ++   +++ ++G  ++ +AT V   GID+ +  ++I  +AE 
Sbjct: 263 LLERGFAVVALSGELTQNERTGALNALRDGRARVCVATDVAARGIDLPNLGLVI--HAEL 320

Query: 571 FGLAQLHQLR-GRVGRGEEISSCILLYHP 598
              A++ Q R GR GR       +LL  P
Sbjct: 321 PNDAEVMQHRSGRTGRAGNKGISVLLVPP 349


>gi|163732640|ref|ZP_02140085.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseobacter litoralis Och 149]
 gi|161394000|gb|EDQ18324.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseobacter litoralis Och 149]
          Length = 703

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 143/337 (42%), Gaps = 43/337 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQ-HYEFIKKYTQ 346
           ++    GSGKT+   +A+A  +         AG   A+I+AP   LAQQ   E    Y +
Sbjct: 35  LVSAQTGSGKTVGFGLAIAPTLLDDQERFGPAGTPLALIIAPTRELAQQVARELSWLYAK 94

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVD 401
              +++  + G M     R+AL+R     AH+++ T     D     +I+   L  V++D
Sbjct: 95  AGAVVISCV-GGMDTRTERRALDR----GAHVVVATPGRLCDHIKRGNIELANLRAVVLD 149

Query: 402 EQHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGR 455
           E       G +  L+  L +       L+ +AT +P+ +  L      D  +I      R
Sbjct: 150 EADEMLDLGFRDELEFILDEAPKDRRTLMFSAT-VPKAIAKLAESYQRDAQRIATVSENR 208

Query: 456 KPIKTVIIPINRIDEVIERLKV-VLS--EGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           +        +N     +E   + VL   E K A   C         N R+ V R  +   
Sbjct: 209 QHADIEYRALNTHPRDVENAIINVLRFYEAKNAIVFC---------NTRAAVARLTTRFT 259

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   S+  + G ++  ++ + + + ++G  ++ +AT V   GID+ +  ++I  +     
Sbjct: 260 NRGFSVVALSGELTQSERSNALQALRDGRARVCVATDVAARGIDLPNLELVIHADLPSNS 319

Query: 573 LAQLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRL 608
              LH+  GR GR G +  S +++  PP  ++   RL
Sbjct: 320 DTLLHR-SGRTGRAGRKGVSALIV--PPKLRSKANRL 353


>gi|225437591|ref|XP_002277419.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743992|emb|CBI36962.3| unnamed protein product [Vitis vinifera]
          Length = 771

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 129/316 (40%), Gaps = 55/316 (17%)

Query: 302 VGSGKTLVALIAMAA--------AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   ++ M          A E G   VI AP   LA Q Y   KK+ +   I V 
Sbjct: 272 TGSGKTAAFVLPMIVHIMDQPELAKEEGPIGVICAPTRELAHQIYLESKKFAKPYGIRVS 331

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV-----IVDEQHR--- 405
            I G M +  + K L+        I+I T     D I+   L ++     ++DE  R   
Sbjct: 332 AIYGGMSKLEQFKELKS----GCEIVIATPGRLIDMIKMKALTMLRATYLVLDEADRMFD 387

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKP 457
             F  Q R  + Q       LL +AT +PR +      +LT                  P
Sbjct: 388 LGFEPQIRSIVGQIRPDRQTLLFSAT-MPRKVEKLAREILTD-----------------P 429

Query: 458 IKTVIIPINRIDEVIERL-KVVLSEGKKAYWIC---PQIEEKKE----SNFRSVVERFNS 509
           ++  +  +   +E I ++ +V+ S+ +K  W+    P + +  +    ++ ++ V+   S
Sbjct: 430 VRVTVGEVGMANEDITQVVQVIPSDAEKLPWLLDKLPGMIDDGDVLVFASKKATVDEIES 489

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                   IA +HG      +  ++  FK+G   +LIAT V   G+D+     ++  +  
Sbjct: 490 QLGQKGLKIAALHGDKDQASRMDILQKFKSGIYHVLIATDVAARGLDIKSIKSVVNFDIA 549

Query: 570 HFGLAQLHQLRGRVGR 585
               A +H++ GR GR
Sbjct: 550 RDMDAHVHRI-GRTGR 564


>gi|323507844|emb|CBQ67715.1| probable RNA helicase dbp2 (DEAD box protein) [Sporisorium
           reilianum]
          Length = 536

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 150/369 (40%), Gaps = 55/369 (14%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ----------AV 325
           S+ SAI+     M+   R L +   + GSGKT+    A+ A V    Q          A+
Sbjct: 134 SEPSAIQSQAWPMALSGRDL-VAIAETGSGKTIG--FALPAMVHINAQPLLKPGDGPIAL 190

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+AP   LA Q      ++  ++++    + G +P+  + + L+R     A I I T   
Sbjct: 191 ILAPTRELANQIQVECNRFGGSSRLRTCAVYGGVPKGPQIRDLQR----GAEICIATPGR 246

Query: 386 FQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             D +   K  L     +++DE  R     F  Q R  L Q       L+ +AT  P+ +
Sbjct: 247 LIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQIRPDRQTLMFSAT-WPKEV 305

Query: 436 ------VLTSLGDIDISKITEKPAGR--KPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                  L +   ++I   TE  A    K I  V     +  ++I  L+++ ++  K   
Sbjct: 306 QRLAGDFLNNFAQVNIGS-TELAANHNVKQIIEVCTEFEKRGKLIGHLELISADNGKVII 364

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                     ++ + V +               IHG     +++ V+  FK+G   +++A
Sbjct: 365 F---------TSTKRVADDITKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGRSPIMVA 415

Query: 548 TTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           T V   G+DV D S +I      N E +    +HQ+ GR GR     +    + P  SK+
Sbjct: 416 TAVASRGLDVKDISYVINYDFPTNTEDY----VHQI-GRTGRAGRTGTAYTYFTPENSKS 470

Query: 604 SYTRLSVLK 612
           +   + +L+
Sbjct: 471 ARELVGILR 479


>gi|331224777|ref|XP_003325060.1| eukaryotic initiation factor 4A-II [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309304050|gb|EFP80641.1| eukaryotic initiation factor 4A-II [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 405

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 122/283 (43%), Gaps = 26/283 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++  +++      QA+++AP   LAQQ  + +        I   
Sbjct: 73  IAQAQSGTGKTATFSISILQSIDVNIKACQALVLAPTRELAQQIQKVLVALGDYLNIECY 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
              G       R  + ++  G  H+I+GT     D IQ   L     D    F + +  +
Sbjct: 133 AAVGG---TSVRDGMAKLQEG-VHVIVGTPGRVFDMIQRRALK---TDHIKIFTLDEADE 185

Query: 414 LTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           +  +     +  +     P  + ++L++    D+ ++T K   R PI+   I + R +  
Sbjct: 186 MLSRGFKDQIYDVFQLLPPTTQVVLLSATMPQDVLEVTSKFM-RDPIR---ILVKRDELT 241

Query: 472 IERLKVVLSEGKKAYW----ICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAII 521
           +E +K      +K  W    +C   E    +    F +   + + L E  T    +++ +
Sbjct: 242 LEGIKQFYIAVEKEDWKLDTLCDLYETVTITQAVIFCNTRRKVDWLQEKLTGREFTVSSM 301

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           HG M    +E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 302 HGDMEQGQREVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVI 344


>gi|57113867|ref|NP_001008986.1| ATP-dependent RNA helicase DDX3Y [Pan troglodytes]
 gi|51315848|sp|Q6GVM6|DDX3Y_PANTR RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|48728366|gb|AAT46349.1| DDX3Y [Pan troglodytes]
          Length = 660

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK----------- 260
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 128 KSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGSNCPPHIENFGD 182

Query: 261 --IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             + + I+ NI  +    PT  Q+ AI  I      K  ++   Q   GSGKT   L+ +
Sbjct: 183 IDMGEIIMGNIQLTRYTRPTPVQKHAIPII----KGKRDLMACAQ--TGSGKTAAFLLPI 236

Query: 315 AA------------AVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            +            AV+  G+         ++++AP   LA Q YE  +K++  +++   
Sbjct: 237 LSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 296

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 297 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 352

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 353 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 411

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  +D+    L ++ + G  +  +   +E KK ++    +E F   HE +  
Sbjct: 412 NITQKVVWVEDLDKRSFLLDILGAAGTDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 464

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 465 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVI 512


>gi|295698591|ref|YP_003603246.1| primosomal protein N' [Candidatus Riesia pediculicola USDA]
 gi|291157016|gb|ADD79461.1| primosomal protein N' [Candidatus Riesia pediculicola USDA]
          Length = 529

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 22/193 (11%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   I+ IL+D   K  +  +L G  GSGKT V L  +   +  G Q +++ P   L  Q
Sbjct: 3   QSRIIERILED---KKFIPWLLVGITGSGKTEVYLRLIENTLILGKQTLMLVPEISLTPQ 59

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKL 395
                K++ +   + +E++  ++    +    ER  +G+  I+IGT  ALF +   +  L
Sbjct: 60  T---TKRFNERFNVPIEVLHSSLNNREKFFIWERSKNGENAIVIGTRSALFTN---FKDL 113

Query: 396 ILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
            L+IVDE+H    +Q+           +   +K   P +++ TATP   +L    +G   
Sbjct: 114 GLIIVDEEHDNSYKQQNGWCYHARNMAIWRAKKEKIP-IIMGTATPSLESLFNVEIGKYR 172

Query: 445 ISKITEKPAGRKP 457
              +T++P G  P
Sbjct: 173 RIDLTKRPKGILP 185


>gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
 gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
          Length = 598

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 132/319 (41%), Gaps = 37/319 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE--AGG-QAVIMAPIGILAQQHYEFIKKYTQNTQ--II 351
           + Q   G+GKT    + + A ++  AGG QA+++ P   LA Q  E  +KY + ++   +
Sbjct: 49  VGQAQTGTGKTAAFALPVLARLDTKAGGPQALVLTPTRELAIQVAEAFQKYARYSKGFKV 108

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQ 403
           V I  G+      R  L ++  G  HII+GT     D ++           L+L   DE 
Sbjct: 109 VPIYGGS----DYRTQLRQLQRG-VHIIVGTPGRVMDHMRRGSLDLSSLKTLVLDEADEM 163

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            R G    ++           ++  TP  R + L S    D  +   K   + P + + I
Sbjct: 164 LRMGFIDDVEW----------ILEQTPATRQIALFSATMPDAIRRIAKTHLQSP-QEITI 212

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--- 520
               +     R +V +  G +      +I E ++ +   +  R     +     +A    
Sbjct: 213 KRKTVTNASIRQRVWIMAGVQKLDALTRILETEDYDGVIIFVRTRIATQELADKLAARGF 272

Query: 521 ----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               ++G ++   +E  +DSFK G   LL+AT V   G+DV   S +I  +  +   A +
Sbjct: 273 ATAALNGDIAQNQREKTVDSFKRGQLDLLVATDVAARGLDVDRVSHVINYDIPNDPEAYI 332

Query: 577 HQLRGRVGRGEEISSCILL 595
           H++ GR GR       IL 
Sbjct: 333 HRI-GRTGRAGRTGEAILF 350


>gi|162605920|ref|XP_001713475.1| eukaryotic initiation factor 4a [Guillardia theta]
 gi|6690142|gb|AAF24007.1|AF083031_4 eukaryotic initiation factor 4a [Guillardia theta]
          Length = 385

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 129/308 (41%), Gaps = 35/308 (11%)

Query: 297 ILQGDVGSGKTLVALIAMA---AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + Q   G+GKT   +I      + +E   + +++ P   LA Q  +  K      +I  +
Sbjct: 53  VAQSQSGTGKTATFVIGTLQNLSNIENKIKNLVLVPTRELATQVEQVFKSIGFFMKIKTQ 112

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ---YY--KLILVIVDEQHR--- 405
           ++TG      R +   +  + +  I+IGT     DS+    YY   L  ++VDE      
Sbjct: 113 LLTG----GDRIQITNKEQYKKPQIVIGTPGKVLDSLSKKTYYIENLEYLVVDEADEMFS 168

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP--AGRKPIKTV 461
             F +Q    +        + L +AT    TL +  L   +  KI  K      + IK  
Sbjct: 169 RGFKIQVLKIIKYLPLEAKIALFSATMPIETLEIVELFMTNPVKILVKKDELTLEGIKQF 228

Query: 462 IIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            I I +    +D VIE    + S+ K    I          N R   E   ++ + +   
Sbjct: 229 YIAIEKEEWKLDSVIE----IYSKIKITQSIIY-------VNTRRKTEWLANIMKKYGFD 277

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +  +HG M  ID+ SVM  F++G  ++LI+T ++  GID+    ++I  +        +H
Sbjct: 278 VGYLHGEMLQIDRSSVMKDFRSGLFRILISTDLVSRGIDIQQVCLVINYDLPKLKEVYIH 337

Query: 578 QLRGRVGR 585
           ++ GR GR
Sbjct: 338 RI-GRSGR 344


>gi|74181660|dbj|BAE32549.1| unnamed protein product [Mus musculus]
          Length = 658

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 171/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           ++ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 129 RSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIENFSD 183

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-- 312
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+  
Sbjct: 184 IEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 237

Query: 313 -----------AMAAAVEAG--GQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
                      A+ A  E G  G+      ++++AP   LA Q YE  +K++  +++   
Sbjct: 238 LSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 297

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 298 VVYGGADTVQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 353

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 354 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 412

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  +D+    L ++ + GK +  +   +E KK ++    +E F     +  +
Sbjct: 413 NITQKVVWVEELDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLENFLFQERYACT 468

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           SI   HG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 469 SI---HGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVI 513


>gi|157964817|ref|YP_001499641.1| ATP-dependent RNA helicase RhlE [Rickettsia massiliae MTU5]
 gi|157844593|gb|ABV85094.1| ATP-dependent RNA helicase RhlE [Rickettsia massiliae MTU5]
          Length = 415

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 139/313 (44%), Gaps = 33/313 (10%)

Query: 302 VGSGKTLVALIAMAAA-VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGKTL  L+ +  + ++    A+I+ P   LA Q +  + K T + +I   ++ G  P
Sbjct: 50  TGSGKTLAYLLPLIDSFIKNKTTALILVPTRELATQIHSTLNKVTISYKINSAVLIGGEP 109

Query: 361 QAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRL 412
              +   L++       +IIGT       L + S++  ++ + ++DE  R    G++++L
Sbjct: 110 MPKQFMQLKK----NPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQL 165

Query: 413 KLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +   K       VL+ +AT +P+ ++  S   ++            P++  +   N+   
Sbjct: 166 EEINKFLPEKRQVLMFSAT-MPKHIIAVSQKYLN-----------NPVRITVGATNKAAA 213

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRM 525
            I++  + +S+ +K   +  Q+  ++ S       +   ++   + ++   +   IHG +
Sbjct: 214 EIKQESMHVSDKEKFSELTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDL 273

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S   +E V+ SF+    ++++AT V   G+D+     +I  +        LH++ GR GR
Sbjct: 274 SQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRI-GRTGR 332

Query: 586 GEEISSCILLYHP 598
                  +    P
Sbjct: 333 AGATGYALSFISP 345


>gi|309972499|gb|ADO95700.1| Primosomal protein N putative [Haemophilus influenzae R2846]
          Length = 730

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/389 (20%), Positives = 156/389 (40%), Gaps = 94/389 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +++G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 222 LLDGVTGSGKTEIYLQYIEEILKSGKQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 277

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
             N+    R    +R   GQ+ I+IGT  ALF    Q+  L  +I+DE+     +Q+   
Sbjct: 278 HSNLTDTQRLYVWDRARSGQSAIVIGTRSALF---TQFSNLGAIILDEEQDASYKQQDSW 334

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                   + L QK     VL+ +ATP   ++     G      ++++      ++  +I
Sbjct: 335 RYHARDLAIVLAQKLNIS-VLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVI 393

Query: 464 PINRID-------EVIERLKVVLSEGKKAY------------------WI--CPQIEEKK 496
            +   +        ++ER+K  L +G +                    WI  CP  E+  
Sbjct: 394 DLKNQNIQNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPY 453

Query: 497 ESNFRSVVERFN----------------SLH--------EHFTSSIAII--HGRMSDIDK 530
             +    V R +                S H        E    ++  +  H  ++ ID+
Sbjct: 454 TYHQHQNVLRCHHCGAQKTIPRQCGDCGSTHLVTTGLGTEQLEETLKTLFPHYSVARIDR 513

Query: 531 ESV---------MDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHF 571
           +S          ++  + G  ++LI T ++           V +  VD+++  ++     
Sbjct: 514 DSTARKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNVDSALFSLDFRAEE 573

Query: 572 GLAQLH-QLRGRVGRGEEISSCILLYHPP 599
            LAQL+ Q+ GR GR ++    +L  H P
Sbjct: 574 RLAQLYIQVAGRAGRADKQGEVVLQTHYP 602


>gi|312131519|ref|YP_003998859.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311908065|gb|ADQ18506.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 408

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 145/349 (41%), Gaps = 42/349 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           + ++M P   LAQQ  +  K   +NT++ +  + G+  Q  + KAL++   G   ++   
Sbjct: 73  RCLVMVPTHELAQQIADVFKSLAKNTRLKIMALYGSTDQEPQIKALQK---GVDVLVTTP 129

Query: 383 HALF----QDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAPHVLLMTATPIPR-- 433
             +F    Q  +    +  +I+DE  R    G  Q +   +K             IP+  
Sbjct: 130 GRMFDLQAQGHLSLEDIKFLILDEADRMLDLGFYQDIIDVKKR------------IPKRH 177

Query: 434 -TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            TL  ++  D  I K+      +  I+  I P + + + I+   V++S   K +++   I
Sbjct: 178 QTLFFSATLDEKIKKLAYSTV-KNAIRIQISPDDPVSKNIDHSVVMVSMEDKRFFLERMI 236

Query: 493 EEKKESNF----RSVV--ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            E  +       R+ V  ER  +           +H   S I++++ ++SFK G   +LI
Sbjct: 237 TENPQQKIIVFVRTKVRAERVAAAMARVNIKTVTLHSDKSHIERKAALESFKKGETWVLI 296

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+     +I  +        +H++ GR GRG +    +       S  S  
Sbjct: 297 ATDVSARGVDIPLVEYVINYDLPDVAENYVHRI-GRTGRGTQKGKAV-------SFCSDE 348

Query: 607 RLSVLKNTED--GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
            L +L++ ED  G+ IA + L + +  E L         F     E+ D
Sbjct: 349 ELPLLESIEDYLGYTIASQTLSELEYQETLIFSNESSRTFKDVMKEIAD 397


>gi|225181200|ref|ZP_03734646.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
 gi|225168169|gb|EEG76974.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
          Length = 470

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 139/338 (41%), Gaps = 56/338 (16%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  QE AI   L+ +        I Q   G+GKT    + M   +E  G   QA+++ P 
Sbjct: 26  TPIQEQAIPTALKGLDL------IGQAHTGTGKTAAFGVPMVEKLEKNGSTVQALVVTPT 79

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + K  Q   I    + G      + + L++    +  II+GT     D I
Sbjct: 80  RELAVQVAEELNKIGQYKGIRTLPVYGGQDIGRQIRGLQK----RPQIIVGTPGRLLDHI 135

Query: 391 --------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT---PIPRTLVL 437
                   Q   ++L   DE    G  + ++  L +       LL +AT   PI +   L
Sbjct: 136 RRRTVRLGQVSMVVLDEADEMLNMGFIEDIEAILQETPQERQTLLFSATMPGPIEQ---L 192

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                 D  KI+ +       K V +P        E+  +V+ E +K   +C  ++ +  
Sbjct: 193 ARRFMRDPQKISVRS------KEVTVPNT------EQFHMVMEERQKFDVLCRLLDTQSP 240

Query: 498 S---NFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L+E       S   IHG M+   ++SVM  FK+G+  +L+AT V 
Sbjct: 241 DLAIVFGRTKRRVDELYEALNKRGYSAEGIHGDMTQARRDSVMRQFKDGSIDILVATDVA 300

Query: 552 EVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGR 585
             G+D+   + +    I ++ E +    +H++ GR GR
Sbjct: 301 ARGLDITGVTHVYNFDIPQDPESY----VHRI-GRTGR 333


>gi|195355988|ref|XP_002044465.1| GM11962 [Drosophila sechellia]
 gi|194131630|gb|EDW53672.1| GM11962 [Drosophila sechellia]
          Length = 946

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG  +  +++SV+  F+NG   +LIAT V   G+DV D   +I  +  +     +H++ 
Sbjct: 522 IHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRI- 580

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           GR GR +++ +    + P  +K +   +SVL+
Sbjct: 581 GRTGRCQQLGTAYTFFTPDNAKQARELISVLE 612


>gi|154251913|ref|YP_001412737.1| primosome assembly protein PriA [Parvibaculum lavamentivorans DS-1]
 gi|154155863|gb|ABS63080.1| primosomal protein N' [Parvibaculum lavamentivorans DS-1]
          Length = 731

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 11/164 (6%)

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGKT 307
           + + +P  +     Q     I  SP +++ +A+   L    +  R   +L  G  GSGKT
Sbjct: 177 QPVDLPTELPFDAPQPNASGIDLSPQQAEAAAL---LTAHVEAERFAAVLLDGITGSGKT 233

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            V   A+AAA+  G Q +I+ P   L  Q   F++++ +           ++P   RR+ 
Sbjct: 234 EVYFEAVAAALRRGKQVLILLPEIALTSQ---FLERFERRFGCRPAEWHSDVPSRERRRV 290

Query: 368 LERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              +A G   +++G   ALF   + +  L L++VDE+H    +Q
Sbjct: 291 WRAVAEGSVSVVVGARSALF---LPFPDLGLIVVDEEHDAAFKQ 331


>gi|150020730|ref|YP_001306084.1| DEAD/DEAH box helicase domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149793251|gb|ABR30699.1| DEAD/DEAH box helicase domain protein [Thermosipho melanesiensis
           BI429]
          Length = 514

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 138/332 (41%), Gaps = 60/332 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           I+Q   G+GKT    I +   +E+ G  QA+I+ P   LA Q  E I    +    I+ +
Sbjct: 43  IVQAKTGTGKTAAFGIPLIELLESKGYVQAIILTPTRELALQVSEEINSLKRKRLKILPV 102

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD----------SIQYYKLILVIVDEQH 404
             G   Q+  R+ +E +  G   I++GT     D           ++Y+  IL   DE  
Sbjct: 103 YGG---QSISRQ-IEHLKRG-VDIVVGTPGRILDHLERKTIDLSKVEYF--ILDEADEML 155

Query: 405 RFGVQQRLKLTQKATAPH-VLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIKT 460
             G    ++   K+T+   + LM +  IPR ++  +   + + ++ KI +K         
Sbjct: 156 DMGFIDDVEKILKSTSDEKIFLMFSATIPRRIIDLAKKYIKNYEVIKIADKQL------- 208

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
                     + E++ + L+E  K   +C  I+   E +F  +V     +     SS  I
Sbjct: 209 -------TTNLTEQIYIELNENDKFEALCRIID--VEDDFYGMVFCRTKVEVDNVSSKLI 259

Query: 521 --------IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID------VVDASIIIIE 566
                   +HG  S   +E V+  FK     +L+AT V   GID      V++ SI +  
Sbjct: 260 ERGYDAEALHGDFSQYQRERVLKKFKEKRINILVATDVAARGIDISGLTHVINYSIPL-- 317

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N EH+    +H++ GR GR       I    P
Sbjct: 318 NPEHY----VHRV-GRTGRAGREGVAITFVTP 344


>gi|21910935|ref|NP_665203.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS315]
 gi|28895375|ref|NP_801725.1| ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
 gi|21905142|gb|AAM80006.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28810621|dbj|BAC63558.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
          Length = 447

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 134/314 (42%), Gaps = 29/314 (9%)

Query: 302 VGSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +       +A  Q VI AP   LA Q ++  K+  +++Q   EI   N
Sbjct: 47  TGSGKTHTFLLPIFEKLDEAKAEVQVVITAPSRELATQIFDACKQIAKHSQ--EEIRLAN 104

Query: 359 -MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRL 412
            +    + + +E++   Q HI+IGT     D ++      +K    +VDE         L
Sbjct: 105 YVGGTDKLRQIEKLKGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFL 164

Query: 413 KLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               K  A       +L+ +AT IP+ L         + K    P   + IKT  +  + 
Sbjct: 165 DTVDKIAASFPKSVQILVFSAT-IPQKLQPF------LKKYLTNPVIEQ-IKTKTVIADT 216

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGR 524
           ID  +   K     G+    I   ++      F +  ER + LH   T++   +A IHG 
Sbjct: 217 IDNWLVSTKGRDKNGQ-LLEILKTMQPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGG 275

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +S  +++ +M+  K    + ++AT +   GID+   S +I +         +H++ GR G
Sbjct: 276 ISPRERKRIMNQVKKLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTG 334

Query: 585 RGEEISSCILLYHP 598
           R     + I LY P
Sbjct: 335 RNGMAGTAITLYQP 348


>gi|254450953|ref|ZP_05064390.1| ATP-dependent rna helicase, dead/deah box family [Octadecabacter
           antarcticus 238]
 gi|198265359|gb|EDY89629.1| ATP-dependent rna helicase, dead/deah box family [Octadecabacter
           antarcticus 238]
          Length = 706

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 147/364 (40%), Gaps = 66/364 (18%)

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIG 331
           +++   D + + R L ++    GSGKTL   IA+A  +    +         A+++AP  
Sbjct: 20  VQEACGDPALEGRDL-LVSAQTGSGKTLGFGIAIAPNLLGDAERFDRADAPLALVIAPTR 78

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD--- 388
            LA Q    ++   + T  ++    G M     R+AL R     AHI++ T    +D   
Sbjct: 79  ELALQVKRELEWLYEKTGAVIASTVGGMDMRDERRALGR----GAHIVVSTPGRLRDHIM 134

Query: 389 --SIQYYKLILVIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTL------ 435
             SI    L  V++DE       G ++ L+  L +       LL +AT +P ++      
Sbjct: 135 RKSIDLSNLKAVVLDEADEMLDLGFREDLEFILDESPKDRQTLLFSAT-VPASIAKLAQR 193

Query: 436 -------VLTSLGD---IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
                  V T+ G+    DI     + + R   +  II + R             E   A
Sbjct: 194 YQRNAERVATTTGEKQHADIEYRAFRVSARD-TENAIINVLR-----------YFEAPNA 241

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              C         N R+ V R  +   +   S+  + G +S  ++   + S ++G  ++ 
Sbjct: 242 IVFC---------NTRATVNRMTTRLSNRGFSVVALSGELSQTERTHALQSMRDGRARVC 292

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNS 604
           +AT V   GID+ +  ++I           LH+  GR GR G + +S +++  PP  +  
Sbjct: 293 VATDVAARGIDLPNLDLVIHAELPTNQDTLLHR-SGRTGRAGRKGTSAMIV--PPAVRKK 349

Query: 605 YTRL 608
             RL
Sbjct: 350 AERL 353


>gi|195492387|ref|XP_002093968.1| GE20460 [Drosophila yakuba]
 gi|194180069|gb|EDW93680.1| GE20460 [Drosophila yakuba]
          Length = 818

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 137/325 (42%), Gaps = 49/325 (15%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  NT +   
Sbjct: 202 TGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNT 261

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF-- 406
            I G  P+  + + LER       I+I T       L + +    +   +++DE  R   
Sbjct: 262 CIFGGAPKGQQARDLER----GVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLD 317

Query: 407 -GVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            G + ++ K+ Q+      +LM +   P+ +       L +   ++I  ++   +    I
Sbjct: 318 MGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSL--SANHNI 375

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS- 517
             ++   +  +++++ +K++     +         E K   F    +R + +  + +   
Sbjct: 376 LQIVDVCDENEKLMKLIKLLTDISAE--------NETKTIIFVETKKRVDEITRNISRQG 427

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHF 571
                IHG  S  +++ V+ SF+NG   +L+AT V   G+DV D   +I      N+E +
Sbjct: 428 WRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDY 487

Query: 572 GLAQLHQLRGRVGRGEEISSCILLY 596
               +H++ GR GR     +   L+
Sbjct: 488 ----VHRI-GRTGRSNNTGTAYTLF 507


>gi|149633893|ref|XP_001512924.1| PREDICTED: similar to helicase like protein 2 [Ornithorhynchus
           anatinus]
          Length = 651

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 174/408 (42%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    +RL  +    G   +      F+K   IP+   G            
Sbjct: 116 KSDEDDWSKPLPPSDRLEQELFSGGNTGI-----NFEKYDDIPVEATGSNCPPHIESFSD 170

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-- 312
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+  
Sbjct: 171 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 224

Query: 313 -----------AMAAAVEAG--GQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
                      A+ A  E G  G+      ++++AP   LA Q YE  +K+   +++   
Sbjct: 225 LSQIYTDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPC 284

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 285 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 340

Query: 407 -GVQQRLK-LTQKATAP-----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
            G + +++ + ++ T P     H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 341 MGFEPQIRRIVEQDTMPQKGIRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 399

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  
Sbjct: 400 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 452

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 453 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 500


>gi|15218071|ref|NP_173516.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|108861895|sp|Q8H0U8|RH42_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 42
 gi|4836896|gb|AAD30599.1|AC007369_9 Similar to RNA helicases [Arabidopsis thaliana]
 gi|332191919|gb|AEE30040.1| DEAD-box ATP-dependent RNA helicase 42 [Arabidopsis thaliana]
          Length = 1166

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 149/363 (41%), Gaps = 66/363 (18%)

Query: 302 VGSGKTLVALIAM------AAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++ M         VEAG     ++MAP   L QQ +  I+K+++   I   
Sbjct: 575 TGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCV 634

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G    A +   L+R       I++ T     D +           ++  +++DE  R
Sbjct: 635 PVYGGSGVAQQISELKR----GTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADR 690

Query: 406 F---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKP-----AGR 455
               G + ++    +   P    +L +AT  PR +   +       K+  KP      GR
Sbjct: 691 MFDMGFEPQITRIIQNIRPERQTVLFSAT-FPRQVETLA------RKVLNKPVEIQVGGR 743

Query: 456 KPIKTVIIPI-------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             +   I  +       +R   ++E L     +GK   ++  Q +EK ++ +R +++   
Sbjct: 744 SVVNKDITQLVEVRPESDRFLRLLELLGEWSEKGKILVFV--QSQEKCDALYRDMIK--- 798

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                 +     +HG     D+ES +  FKN  C LLIAT+V   G+DV +  +++  +A
Sbjct: 799 -----SSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDA 853

Query: 569 EHFGLAQLHQLRGRVGRGEE-------ISSCILLYHPPLSK----NSYTRLSVLKNTEDG 617
            +     +H++ GR GR          IS     Y P L K    +       LK   DG
Sbjct: 854 PNHYEDYVHRV-GRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDLKALADG 912

Query: 618 FLI 620
           F++
Sbjct: 913 FMV 915


>gi|11990882|dbj|BAB19807.1| vasa [Oreochromis niloticus]
          Length = 645

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/385 (20%), Positives = 153/385 (39%), Gaps = 74/385 (19%)

Query: 258 EGKIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           E  + + + RN+  S    PT  Q+  I  I    S    ++   Q   GSGKT   L+ 
Sbjct: 211 EAALCESLKRNVSKSGYVKPTPVQKHGIPII----SAGRDLMACAQ--TGSGKTAAFLLP 264

Query: 314 MAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           +   + A G             A+I+AP   L  Q Y   +K+   T +   ++ G +  
Sbjct: 265 ILQQLMADGAAASCFSEMQEPDAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVST 324

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQ 416
            H+ + L R      +++ GT     D I   K+ L     +++DE  R        +  
Sbjct: 325 GHQIRDLLR----GCNVLCGTPGRLLDMIGRGKVGLTKVRYLVLDEADR--------MLD 372

Query: 417 KATAPHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK--------------PAGRK 456
               P +  +  +P +P     +TL+ ++    DI ++                      
Sbjct: 373 MGFEPDMRRLVGSPGMPSKENRQTLMFSATFPEDIQRLAADFLKTDYLFLAVGIVGGACS 432

Query: 457 PIKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            ++   + + +    +++I+ LK   SE    +     +E K++++F + +       E 
Sbjct: 433 DVEQTFVQVTKFAKREQLIDLLKSTGSERTMVF-----VETKRQADFIATI----LCQEK 483

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F ++   IHG      +E  +  F++G C +L+AT+V   G+D+ D   ++  +  +   
Sbjct: 484 FPTTS--IHGDREQWQREQALGDFRSGKCSVLVATSVGARGLDIPDVQFVVNFDLPNNID 541

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
             +H++ GR GR       +  Y P
Sbjct: 542 EYVHRI-GRTGRCGNTGRAVSFYDP 565


>gi|95930869|ref|ZP_01313600.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95133111|gb|EAT14779.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 463

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 136/332 (40%), Gaps = 63/332 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I QG  GSGKT    + +   +       QA+++ P   LA Q  + I+K  +    I V
Sbjct: 45  IGQGKTGSGKTAAFGLGLLQKLNVKRFHVQALVLCPTRELADQVAKEIRKLARTIHNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF- 406
             + G MP   +  +LE   HG AHII+GT    ++     +++   L L+++DE  R  
Sbjct: 105 LTLCGGMPFGPQLGSLE---HG-AHIIVGTPGRIEEHVRKGALKLDNLTLLVLDEADRML 160

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
             G Q+ L   + Q       LL +AT  PR +              E  AGR     V+
Sbjct: 161 EMGFQEALDAIIDQTPQTRQTLLFSAT-FPRQI--------------ESIAGRVMKTPVM 205

Query: 463 IPINRI--------------DEVIERLKVV-----LSEGKKAYWICPQIEEKKESNFRSV 503
           + +                 D+  +R + +       +   A   C       + + R V
Sbjct: 206 VQVEATHDSAVITQHFYEVADDTADRQQALRRLLRYYQPTSAVVFC-----NTKQDTRDV 260

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
               + L EH  S++A+ HG +   +++  +  F NG+  +L+AT V   G+D+     +
Sbjct: 261 A---DDLREHGFSALAL-HGDLEQRERDQSLVRFSNGSASILVATDVAARGLDIEALDAV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGR-GEEISSCIL 594
              +        +H++ GR GR G    +C L
Sbjct: 317 FNYHIARDTEVHVHRI-GRTGRAGSHGMACSL 347


>gi|219871421|ref|YP_002475796.1| primosome assembly protein PriA [Haemophilus parasuis SH0165]
 gi|219691625|gb|ACL32848.1| primosome assembly protein PriA [Haemophilus parasuis SH0165]
          Length = 737

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 104/477 (21%), Positives = 192/477 (40%), Gaps = 103/477 (21%)

Query: 242 LMRKQFKKEIGIPINVEG---KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L  K + +++ IP NV+    K+A++ + N     T +++  +  + +   Q+     +L
Sbjct: 167 LFEKGYLEKLEIPFNVQSWQEKLAEQPICNSQNRLTLNKQQTLV-VSRLHYQQGFGAFLL 225

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITG 357
            G  GSGKT V L  +   ++ G Q +++ P IG+  Q     I+++     + ++ +  
Sbjct: 226 NGVTGSGKTEVYLQVIEEVLKRGEQVLVLVPEIGLTPQT----IQRFQARFNVEIDALHS 281

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH----------RF 406
           ++    R  A  R  +G++ I+IGT  ALF    Q+ +L L+I+DE+H          R+
Sbjct: 282 HLNDTQRLNAWLRAKNGESAIVIGTRSALF---TQFQQLGLIIIDEEHDGSFKQQDGWRY 338

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
             +    L  K     ++L +ATP   +L     G     ++T +       K  +I + 
Sbjct: 339 HARDLAVLRAKNNNIPIILGSATPSFESLQNVQNGKFIELQLTARAGNAHFSKQTLIDLK 398

Query: 467 R-------IDEVIERLKVVLSEGKKAY------------------WI--CPQIEEKKESN 499
           +        ++++  ++  L +G +                    WI  CP  ++    +
Sbjct: 399 KQRIYSGLSEKLLAMMQAHLEKGNQVMLFLNRRGFAPVLLCHECGWIADCPSCDKPFTYH 458

Query: 500 FRSVVERFNSLHE---------HFTSSIAIIHG-----------------RMSDIDKESV 533
            +  V R +             H  S   I  G                  ++ ID++S 
Sbjct: 459 QKQRVLRCHHCASQKAIPRQCGHCGSVNLITTGIGTEQLEQVLAQRFPQYSITRIDRDST 518

Query: 534 ---------MDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHFGLA 574
                    +   + G  ++LI T ++           V I  VD+S+   +      LA
Sbjct: 519 ARKGSLEQHLAEIQAGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSSLFSTDYRAEERLA 578

Query: 575 QLH-QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL-IAEEDLKQRK 629
           QL+ Q+ GR GR E+    +L  H P     +  L+ L N  DG+L  A + L  RK
Sbjct: 579 QLYVQVSGRAGRAEKQGEVVLQTHYP----DHPLLTSLLN--DGYLAFASQALAMRK 629


>gi|194387478|dbj|BAG60103.1| unnamed protein product [Homo sapiens]
          Length = 603

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 129 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKST 188

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 189 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 244

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  +  ++G +++S      A
Sbjct: 245 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------A 298

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + +++I  ++ ++SE           +E K   F     R + L 
Sbjct: 299 NHNILQIVDVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELT 347

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 348 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 407

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 408 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 450


>gi|50122015|ref|YP_051182.1| ATP-dependent RNA helicase DbpA [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612541|emb|CAG75991.1| ATP-independent RNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 460

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 142/323 (43%), Gaps = 58/323 (17%)

Query: 302 VGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIVEII 355
            GSGKT    + L+      +   QA+++ P   LA Q       + ++ QN +I+   +
Sbjct: 50  TGSGKTAAFGIGLLDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILT--L 107

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQ 410
            G  P   +   L+ + H   HI++GT    QD ++   L L     +++DE  R     
Sbjct: 108 CGGQPMGQQ---LDSLVHA-PHIVVGTPGRIQDHLRKQSLALDSLKVLVLDEADRM---- 159

Query: 411 RLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPI---- 465
              L    T     +++ TP  R TL+ ++    +I +I+ +   R+P +  I       
Sbjct: 160 ---LDMGFTDAIDDVISYTPSDRQTLLFSATYPQEIEQISAR-VQRQPQRFEIADDVEES 215

Query: 466 --------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
                      D+ +  L  +LS  + A  +   +    + + +SV E      E    S
Sbjct: 216 AIEQRFYETTKDQRLPLLIAILSHYQPASCV---VFCNTKRDCQSVFEAL----EMRGIS 268

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA--- 574
           ++ +HG +   D++ V+  F N +C++L+AT V   G+D+ + ++++     +F LA   
Sbjct: 269 VSALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAARGLDIKELALVV-----NFELAFDP 323

Query: 575 QLHQLR-GRVGR----GEEISSC 592
           ++H  R GR GR    G  +S C
Sbjct: 324 EVHVHRIGRTGRAGTQGLAVSLC 346


>gi|127513380|ref|YP_001094577.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126638675|gb|ABO24318.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 460

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 133/325 (40%), Gaps = 47/325 (14%)

Query: 302 VGSGKTLVAL-------IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L       IA  A  +   + +I+ P   LA Q Y  ++    NTQ     
Sbjct: 60  TGSGKTLAFLLPAMQRVIATKALSKRDPRVLILLPTRELATQVYSQLRLLVANTQYKAIK 119

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---F 406
           I G      + KAL R      H ++ T     D +    L L     +I+DE  R    
Sbjct: 120 ILGGENFNDQAKALAR----DPHFVVATPGRLADHLAQRHLYLNGLELLILDEADRMLDL 175

Query: 407 GVQQRLKLTQKATAPH----VLLMTATPIPRTLVLTSLGDIDISKITEKPAGR-KPIKTV 461
           G  ++L+   +A A H     L+ +AT             +D  +I E  A   K  + V
Sbjct: 176 GFAEQLRAINQA-ADHKRRQTLMFSAT-------------LDHGQINEIAAELLKEPEHV 221

Query: 462 IIPINRID--EVIERLKVV--LSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEH 513
            I  + ++  ++ +++ +   LS  ++      Q+E  K+    +  R   +R   +   
Sbjct: 222 AIGASHVENQDIAQKIYLCDNLSHKEQLLTRLLQLEPHKQVIIFTATRGDTDRLAGVLAE 281

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S + + G +    +  +MD F  G  ++L+ T V   G+D+++ S++I  +   F  
Sbjct: 282 QGFSTSSLSGELKQAARNQIMDQFSRGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAE 341

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
             +H++ GR GR       I L  P
Sbjct: 342 EYIHRI-GRTGRAGAKGDAISLVGP 365


>gi|306829191|ref|ZP_07462381.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           mitis ATCC 6249]
 gi|304428277|gb|EFM31367.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           mitis ATCC 6249]
          Length = 454

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 135/315 (42%), Gaps = 31/315 (9%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT-- 356
            GSGKT   L+ +   ++      QAVI AP   LA Q Y+  ++   ++ + V ++   
Sbjct: 54  TGSGKTHTFLLPIFQQLDETSDSVQAVITAPSRELATQIYQAARQIAAHSDVEVRVVNYV 113

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQR 411
           G   +A   + ++++A  Q HI+IGT     D ++      +K    +VDE         
Sbjct: 114 GGTDKA---RQIDKLASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGF 170

Query: 412 LKLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           L+   K           ++ +AT IP+ L         + K    P   K IKT  +  +
Sbjct: 171 LETVDKIAGSLPKDLQFMVFSAT-IPQKLQPF------LKKYLSNPVMEK-IKTKTVISD 222

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHG 523
            ID  +   K    +  + Y +   ++      F +   R + LH + T+    +A IHG
Sbjct: 223 TIDNWLISTKG-RDKNAQIYELTQAMQPYLAMIFVNTKTRADELHTYLTAQGLKVAKIHG 281

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            ++  +++ +M+  KN   + ++AT +   GID+   S +I +         +H++ GR 
Sbjct: 282 DIAPRERKRIMNQVKNLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRT 340

Query: 584 GRGEEISSCILLYHP 598
           GR       I LY P
Sbjct: 341 GRNGLPGIAITLYQP 355


>gi|154485068|ref|ZP_02027516.1| hypothetical protein EUBVEN_02791 [Eubacterium ventriosum ATCC
           27560]
 gi|149734021|gb|EDM50140.1| hypothetical protein EUBVEN_02791 [Eubacterium ventriosum ATCC
           27560]
          Length = 587

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 91/195 (46%), Gaps = 19/195 (9%)

Query: 280 AIKDILQDMSQKNRM-LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           AIK+ + D  +K+++ + ++ G  GSGKT V +  +   ++ G   +++ P   L    Y
Sbjct: 60  AIKETM-DFKKKDKVNVHLIHGITGSGKTEVYMDLIDYTIKKGKSVIVLIPEIALT---Y 115

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLIL 397
           + + ++T+  +  V II   +    R    ER  +G   I+IG   ALF     +  L L
Sbjct: 116 QTVMRFTRRFKEKVSIINSRLSSGERYDQFERAKNGDVTIMIGPRSALF---TPFSNLGL 172

Query: 398 VIVDEQHRFGVQQR-------LKLTQK---ATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           +++DE+H    +         +++ QK    T   V+L +ATP   +      G   + K
Sbjct: 173 IVIDEEHESAYKSESVPKYHAIEVAQKRAYDTGATVVLGSATPSLESYYKAKNGTYILHK 232

Query: 448 ITEKPAGRKPIKTVI 462
           +T +  G  P  +++
Sbjct: 233 LTTREKGNLPSVSIV 247


>gi|315230959|ref|YP_004071395.1| cold-shock DEAD-box protein A [Thermococcus barophilus MP]
 gi|315183987|gb|ADT84172.1| cold-shock DEAD-box protein A [Thermococcus barophilus MP]
          Length = 389

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 146/344 (42%), Gaps = 62/344 (18%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   G+GKT    + L+ +    E   QA+I+ P   LA Q  + IK      +I V  +
Sbjct: 52  QSQTGTGKTASFALPLVDVINEYEREVQAIILTPTRELALQVADEIKSLRGKKRIKVLSV 111

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQHR 405
            G  P   + +AL +     AHI++GT            L  D IQY+     I+DE  R
Sbjct: 112 YGGQPIGPQIRALRK----GAHIVVGTPGRVLDHIRRGTLRLDGIQYF-----ILDEADR 162

Query: 406 -----FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
                F    R    +      VL+ +AT +PR ++  +   +   ++  + +  +P+  
Sbjct: 163 MLDMGFIDDIRAIFRETPRDKRVLMFSAT-MPREVLKLAKRYMKEYELI-RTSSDEPVPN 220

Query: 461 VI-------IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           ++       +P  +I  V+ER   +L+        C   + K+E+  R + E+   +   
Sbjct: 221 LVEQEYIEVVPARKIS-VLER---ILNSEFYGIVFC---QTKRET--RILAEKLARIG-- 269

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAE 569
              S   ++G MS   +E  +  FK     +L+AT V   GIDV D + I+     +NAE
Sbjct: 270 --YSAEALNGDMSQKSRERALMRFKRRKINILVATDVAARGIDVQDITHIVNYSLPQNAE 327

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            +    +H++ GR GR  +    I    P      Y RL  ++N
Sbjct: 328 MY----IHRI-GRTGRAGKKGKAITFIMP----GEYRRLRYIEN 362


>gi|242398904|ref|YP_002994328.1| Putative ski2-type helicase [Thermococcus sibiricus MM 739]
 gi|242265297|gb|ACS89979.1| Putative ski2-type helicase [Thermococcus sibiricus MM 739]
          Length = 744

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 137/335 (40%), Gaps = 61/335 (18%)

Query: 302 VGSGKTLVALIAMAAAV-EAGGQAVIMAPIGILAQQHY-EFIKKYTQNTQIIVEIITGNM 359
             SGKTLVA I M   +   GG+ V + P+  LA++ Y EF  K+ +   I + + TG+ 
Sbjct: 71  TASGKTLVAEIVMINKILREGGKTVYLVPLKALAEEKYKEF--KFWEKLGIRIAMTTGDY 128

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK------LILVIVDEQHRFGVQQR-- 411
                         G+  III T   F DS+  +K      + LVI DE H  G   R  
Sbjct: 129 DSTEE-------WLGKYDIIIATSEKF-DSLLRHKSPWIKDINLVIADEIHLLGSYDRGA 180

Query: 412 ---LKLTQKATAPHVLLMTAT---------PIPRTLVLTSLGDIDISK---------ITE 450
              + L        +L ++AT          +   LV++    + + K           +
Sbjct: 181 TLEMILAHLDDKAQILGLSATVGNAEEVAEWLNADLVMSEWRPVALRKGVFYHGELFWED 240

Query: 451 KPAGRKPIKT---VIIPINRIDEVIERLKVVLSEGKKAYWICPQIE----EKKESNFRSV 503
               R P +    VI  + +  + +  +    S  K+A  +  +I+    + +E   + +
Sbjct: 241 GSIERFPTQWDSLVIDALKKGKQALVFVNTRRSAEKEALLLAGKIQRFLTKPEERKLKQL 300

Query: 504 VERFNS------LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +  ++      L E  T  +A  H  +   ++  + D+F+ G  K++ AT  +  G+++
Sbjct: 301 ADGLDTTPTNQKLKEALTKGVAFHHAGLGRTERSIIEDAFREGLIKVITATPTLSAGVNL 360

Query: 558 VDASIIIIENAEH--FGLA-----QLHQLRGRVGR 585
               +II +   +  FG       ++ Q+ GR GR
Sbjct: 361 PAYRVIIRDTKRYSNFGWVDIPVLEIQQMMGRAGR 395


>gi|227820653|ref|YP_002824623.1| DEAD/DEAH box protein, ATP-dependent RNA helicase [Sinorhizobium
           fredii NGR234]
 gi|227339652|gb|ACP23870.1| DEAD/DEAH box protein, ATP-dependent RNA helicase [Sinorhizobium
           fredii NGR234]
          Length = 633

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 139/325 (42%), Gaps = 43/325 (13%)

Query: 297 ILQGDVGSGKTLV-------ALIAMAAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+         L+  A   ++ G   A+++AP   LA Q    ++   + 
Sbjct: 41  LVSAQTGSGKTVAFGLALGPTLLGPARQFDSPGAPLALVIAPTRELALQVKRELEWLYEI 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399
           T   +    G M     R+ALER     AHI++GT     D I+   L        +L  
Sbjct: 101 TGATIASCVGGMDIRSERRALER----GAHIVVGTPGRLCDHIRRDSLDISALRAIVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKI----TEKP 452
            DE    G ++ L+  L    T    L+ +AT +PR++  L      D  +I     +K 
Sbjct: 157 ADEMLDLGFREDLEFILEASPTERRTLMFSAT-VPRSIATLAKNYQRDAVRIGVASEQKQ 215

Query: 453 AGRKPIKTVII-PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            G    +++++ P +R + +I  L+    + + A   C         + R+ V    +  
Sbjct: 216 HGDIEYRSLLVAPSDRENAIINVLRYY--DARNAIVFC---------STRAAVNHLTARF 264

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            +   S+  + G +S  ++   + + ++G  ++ IAT V   GID+    ++I  +    
Sbjct: 265 NNRGFSVVALSGELSQNERNHALQAMRDGRARVCIATDVAARGIDLPGLELVIHADLPTN 324

Query: 572 GLAQLHQLRGRVGR-GEEISSCILL 595
               LH+  GR GR G++  S +++
Sbjct: 325 PDTLLHR-SGRTGRAGQKGVSALIV 348


>gi|219880759|gb|ACL51654.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Callithrix
           jacchus]
          Length = 654

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 168/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK----------- 260
           K+ + +W+ P    ER   +    G   +      F+K   IP+   G            
Sbjct: 124 KSDEDDWSKPLPPSERXERELFSGGNTGI-----NFEKYDXIPVEATGSNCPPHIENFSD 178

Query: 261 --IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             + + IL NI  +    PT  Q+ AI  I      K  ++   Q   GSGKT   L+ +
Sbjct: 179 IDMGEIILGNIELTRYTRPTPVQKHAIPII----KGKRDLMACAQ--TGSGKTAAFLLPI 232

Query: 315 AA------------AVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            +            AV+  G+         ++++AP   LA Q YE  +K++  +++   
Sbjct: 233 LSQIYTDGPGEALKAVKGNGRCGRRKQYPVSLVLAPTRELAVQIYEEARKFSYRSRVRPC 292

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  +   
Sbjct: 293 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIALDFCKYLVLDEADKMLD 348

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 349 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 407

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   +I +  +D+    L ++ + G+ +  +   +E KK ++    +E F     H  +
Sbjct: 408 NITQKVIWVEDLDKRSFLLDILGATGRDSLTLV-FVETKKGAD---SLEDFLYHEGHACT 463

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           SI   HG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 464 SI---HGDRSQRDREEALRQFRSGRSPILVATAVAARGLDISNVRHVI 508


>gi|194747363|ref|XP_001956121.1| GF24750 [Drosophila ananassae]
 gi|190623403|gb|EDV38927.1| GF24750 [Drosophila ananassae]
          Length = 613

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 141/339 (41%), Gaps = 43/339 (12%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ----------AVIMAPIGILAQQHYEFIKKYTQNTQII 351
            GSGKTL  +  + A +   GQ          A+++AP   LAQQ       +  +  + 
Sbjct: 162 TGSGKTLAFI--LPAILHINGQQPLQRGDGPIALVLAPTRELAQQIQSVANDFGSSAYVR 219

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF 406
              I G  P++ +   LER       I+I T     D +Q       +   +++DE  R 
Sbjct: 220 NTCIFGGAPRSRQANDLER----GVQIVIATPGRLLDFLQGGATNLKRCTYLVLDEADRM 275

Query: 407 ---GVQQRLK--LTQKATAPHVLLMTATPIP---RTLVLTSLGD-IDISKITEKPAGRKP 457
              G +Q+++  L Q      +L+ +AT  P   R L    LG+ I I+  + + +    
Sbjct: 276 LDMGFEQQIRKILGQIRPDRQILMWSAT-WPKEVRKLAEDFLGNYIQINIGSLELSANHN 334

Query: 458 IKTVIIPINRIDEVIERLKVVLS----EGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           I+   + +    E   +LK +LS    +      I   +  KK+      V+        
Sbjct: 335 IRQ-FVEVCAEHEKGGKLKDLLSHIYDQSTSPGKIIIFVATKKK------VDELARFINA 387

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F   +  IHG  S +D++SV++ F+NG   +L+AT V   G+DV     +I  +      
Sbjct: 388 FGVGVGSIHGDKSQMDRDSVLNDFRNGRHNILVATDVAARGLDVDGIKYVINFDFPQSSE 447

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             +H++ GR GR     +    +    +K +   + +L+
Sbjct: 448 DYVHRI-GRTGRKHSTGTSYAFFTRKNAKCARALIEILR 485


>gi|86357796|ref|YP_469688.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
 gi|86281898|gb|ABC90961.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
          Length = 651

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 127/313 (40%), Gaps = 40/313 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  +  G +         A+++AP   LA Q    ++   + 
Sbjct: 41  LVSAQTGSGKTVAFGLALAPTLLDGHERFGNAGAPLALVIAPTRELALQVKRELEWLYEM 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399
           T  ++    G M     R+ALER     AHI++GT     D I+   L        +L  
Sbjct: 101 TGAVIASCVGGMDIRSERRALER----GAHIVVGTPGRLCDHIRRRALDMSDLKAAVLDE 156

Query: 400 VDEQHRFGVQQRLK-LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGRKP 457
            DE    G ++ L+ +   A      LM +  +P  +  L      D  +I+     ++ 
Sbjct: 157 ADEMLDLGFREDLEFILDSAPDERRTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQH 216

Query: 458 IKT-----VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           +       ++ P +R + +I  L+    E   A   C         + R+ V    +   
Sbjct: 217 VDIEYRALMVAPSDRENAIINVLRYY--EATNAIVFC---------STRAAVNHLTARFN 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   S+  + G ++  ++   + + ++G  ++ IAT V   GID+    ++I  +     
Sbjct: 266 NRNFSVVALSGELTQNERSHALQAMRDGRARVCIATDVAARGIDLPGLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGR 585
              LH+  GR GR
Sbjct: 326 ETLLHR-SGRTGR 337


>gi|297560235|ref|YP_003679209.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844683|gb|ADH66703.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 489

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 137/323 (42%), Gaps = 49/323 (15%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL   +A+ A +E  G+        AV++AP   LAQQ  + +  Y ++ ++   
Sbjct: 106 TGSGKTLAFGLALLARLE--GRVAEPRRPLAVVLAPTRELAQQVNDSLAPYARSLRVRTT 163

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G MP + + +AL +       +++ T    +D ++    +L      ++DE  +   
Sbjct: 164 TVVGGMPISRQSRALRQ----GVELVVATPGRLRDLMERDDCVLDQVDVTVLDEADQMTD 219

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKT 460
             F  Q    LT+  T    +L +AT + R   TLV   L D  +  +         ++ 
Sbjct: 220 MGFMPQVTAILTEVPTGGQRMLFSAT-LDRNVDTLVRRFLNDPVVHSVDPSEGAVSTMEH 278

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--- 517
            ++ ++  D+     ++   +G+   ++          + +  V+R   + +H  +S   
Sbjct: 279 HVLHVSHADKQDAATRIAARDGQVILFL----------DTKHAVDR---MAKHLLNSGVR 325

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI--DVVDASIIIIENAEHFGLAQ 575
            A +HG  S   +   +  FK GT   L+AT V   GI  D +D  + I    +H     
Sbjct: 326 AAPLHGGRSQPQRTRTLKQFKEGTVTALVATNVAARGIHVDGLDLVVNIDPPTDHKDY-- 383

Query: 576 LHQLRGRVGRGEEISSCILLYHP 598
           LH+  GR  R  +  S + L  P
Sbjct: 384 LHR-GGRTARAGQTGSVVTLVLP 405


>gi|296201832|ref|XP_002748195.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 2
           [Callithrix jacchus]
          Length = 603

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 129 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKST 188

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 189 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 244

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  +  ++G +++S      A
Sbjct: 245 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------A 298

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + +++I  ++ ++SE           +E K   F     R + L 
Sbjct: 299 NHNILQIVDVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELT 347

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 348 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 407

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 408 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 450


>gi|242012227|ref|XP_002426835.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212511048|gb|EEB14097.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 678

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 141/340 (41%), Gaps = 41/340 (12%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+  ++     +          G  A+I+AP   LAQQ       + + T+I   
Sbjct: 173 TGSGKTIAYMLPAIVHIHNQPPLELNDGPIALILAPTRELAQQIQSVANDFGEATRIRNS 232

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            I G  P+  + + LE        I+I T     D     +    +   +++DE  R   
Sbjct: 233 CIFGGAPKGPQFRDLE----SGVEIVIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLD 288

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKP 457
             F  Q R  + Q      VL+ +AT  P+ +       LT    ++I  + +  A    
Sbjct: 289 MGFEPQIRKIVEQIRPDRQVLMWSAT-WPKEVRALAEDYLTDYIQLNIGSL-QLSANHNI 346

Query: 458 IKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           ++  I+ + +  E   +L+ +L E   +K       +E K++      V+    +     
Sbjct: 347 LQ--IVDVCQEHEKENKLRQLLHEIGSEKENKTIIFVETKRK------VDNITQILRKDG 398

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
                IHG  +  +++ V+  F+NG   +L+AT V   G+DV D   +II +        
Sbjct: 399 WPALSIHGDKNQQERDHVLTQFRNGRASILVATDVAARGLDVEDVKFVIIFDYPSSLEDY 458

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +H++ GR GR E+  +    + P   K++   ++VL+  +
Sbjct: 459 IHRI-GRTGRSEQTGTAYAFFTPHNVKHANALINVLEEAD 497


>gi|149908418|ref|ZP_01897081.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
 gi|149808581|gb|EDM68516.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
          Length = 449

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 129/292 (44%), Gaps = 32/292 (10%)

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAH 377
            + +I+ P   LA Q  E I+ Y+++ ++   ++ G +   PQ  R R+ ++        
Sbjct: 74  ARTLILTPTRELAAQIAENIEVYSKHLRLTSTVVFGGVKINPQMTRLRRGVD-------- 125

Query: 378 IIIGTHALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I++ T         Q++I++++L ++++DE  R      L+  +K       ++   P  
Sbjct: 126 ILVATPGRLLDLYNQNAIRFHQLEILVLDEADRMLDMGFLRDIRK-------ILAVLPQK 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R  +L S    D  +   +     P++  + P N   + +E+    + + KKA  +   I
Sbjct: 179 RQNLLFSATFSDDIRQLARGLINDPVEISVTPRNAAAKSVEQWMHPVDKKKKALLLTHLI 238

Query: 493 EEKKESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +E        F       N L +H      + A IHG  S   +   + +FK+G  + LI
Sbjct: 239 KENDWKQVLVFTKTKHGANKLTKHLEEQGINAAAIHGNKSQSARTKALANFKSGEVRALI 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
           AT +   GID+V    ++  +  +     +H++ GR GR G E ++  L+ H
Sbjct: 299 ATDIAARGIDIVQLPQVVNFDLPNVPEDYVHRI-GRTGRAGSEGTAISLVCH 349


>gi|302039343|ref|YP_003799665.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii]
 gi|300607407|emb|CBK43740.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii]
          Length = 620

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 9/101 (8%)

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           R  VE   +      SS+   H  +SD ++  V D F+ G  ++L AT    +GID  D 
Sbjct: 240 RRAVEEVAACLGASQSSVGYYHAGLSDEERRKVHDEFRVGAVRILAATNAFGMGIDKSDV 299

Query: 561 SIIIIENAEHF----GLAQLHQLRGRVGRGEEISSCILLYH 597
            +++     HF     L   +Q  GR GR    ++C+LL+H
Sbjct: 300 RLVV-----HFDIPGSLEAYYQEVGRAGRDGRPAACLLLFH 335


>gi|260582567|ref|ZP_05850357.1| primosomal protein N [Haemophilus influenzae NT127]
 gi|260094378|gb|EEW78276.1| primosomal protein N [Haemophilus influenzae NT127]
          Length = 730

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/389 (20%), Positives = 156/389 (40%), Gaps = 94/389 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +++G Q +++ P IG+  Q     ++++     + ++++
Sbjct: 222 LLDGVTGSGKTEIYLQYIEEILKSGKQVLVLVPEIGLTPQT----VQRFKARFNVEIDVL 277

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
             N+    R    +R   GQ+ I+IGT  ALF    Q+  L  +I+DE+     +Q+   
Sbjct: 278 HSNLTDTQRLYVWDRARSGQSAIVIGTRSALF---TQFSNLGAIILDEEQDASYKQQDSW 334

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                   + L QK     VL+ +ATP   ++     G      ++++      ++  +I
Sbjct: 335 RYHARDLAIVLAQKLNIS-VLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVI 393

Query: 464 PINRID-------EVIERLKVVLSEGKKAY------------------WI--CPQIEEKK 496
            +   +        ++ER+K  L +G +                    WI  CP  E+  
Sbjct: 394 DLKNQNIQNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPY 453

Query: 497 ESNFRSVVERFN----------------SLH--------EHFTSSIAII--HGRMSDIDK 530
             +    V R +                S H        E    ++  +  H  ++ ID+
Sbjct: 454 TYHQHQNVLRCHHCGAQKTIPRQCGDCGSTHLVTTGLGTEQLEETLKTLFPHYSVARIDR 513

Query: 531 ESV---------MDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHF 571
           +S          ++  + G  ++LI T ++           V +  VD+++  ++     
Sbjct: 514 DSTARKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNVDSALFSLDFRAEE 573

Query: 572 GLAQLH-QLRGRVGRGEEISSCILLYHPP 599
            LAQL+ Q+ GR GR ++    +L  H P
Sbjct: 574 RLAQLYIQVAGRAGRADKQGEVVLQTHYP 602


>gi|328697427|ref|XP_001946984.2| PREDICTED: ATP-dependent RNA helicase p62-like isoform 1
           [Acyrthosiphon pisum]
          Length = 551

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 155/375 (41%), Gaps = 50/375 (13%)

Query: 265 ILRNIPFS---PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA- 320
           ++RN  F+   P ++Q   I      MS KN M+ + Q   GSGKTL   +     +   
Sbjct: 151 VIRNEGFTEPTPIQAQGWPIA-----MSGKN-MVGVAQ--TGSGKTLGYTLPAVVHINNQ 202

Query: 321 -------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                  G  A+++AP   LAQQ  +    + Q+T +    I G  P++H+ + L     
Sbjct: 203 EPLKKGDGPIALVLAPTRELAQQIQKVAGLFNQSTYLRSTCIYGGAPKSHQARDL----M 258

Query: 374 GQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQRL-KLTQKATAPHVL 424
               I+I T     D     +    +   +++DE  R    G + ++ K+ Q+      +
Sbjct: 259 NGVEIVIATPGRLLDFLESRATNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQV 318

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-----EVIERLKVVL 479
           LM +   P+ +    L +  +S   +   G   +      +  +D     E  ++L  +L
Sbjct: 319 LMWSATWPKEV--QKLANDFLSDYIQLNVGSLTLSANHNILQNVDVCQEHEKEDKLMDLL 376

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI---IHGRMSDIDKESVMDS 536
            +          +EE K   F     + +++    T+  A    IHG  S  +++ V+  
Sbjct: 377 QD-------IANMEENKTIIFAETKRKVDTITRKITNMGARAVGIHGDKSQSERDHVLKQ 429

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G   +L+AT V   G+DV D   +I  +  +     +H++ GR GR  +  +    +
Sbjct: 430 FRGGRANILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRI-GRTGRSSQKGTSYAFF 488

Query: 597 HPPLSKNSYTRLSVL 611
               SK +   ++VL
Sbjct: 489 THSNSKQAKDLVAVL 503


>gi|260796379|ref|XP_002593182.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae]
 gi|229278406|gb|EEN49193.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae]
          Length = 614

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 90/413 (21%), Positives = 162/413 (39%), Gaps = 93/413 (22%)

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-------------IA 262
           +D +W+ P       +  L G+    +    F K   IP+   G+             + 
Sbjct: 90  EDADWSKPLPRNERMERELFGKSNTGI---NFDKYEDIPVEATGESCPQHISEFTDLDLG 146

Query: 263 QKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           + I  NI  S    PT  Q+ AI      +++ NR L +     GSGKT   LI + + +
Sbjct: 147 EIISNNIKLSNYMKPTPVQKYAIP-----IARANRDL-MACAQTGSGKTAAFLIPILSLI 200

Query: 319 -EAGGQ--------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            E G Q                    A+++AP   LA Q Y+  KK+   + +   ++ G
Sbjct: 201 YENGPQGLPQHGRQYGGSGSRKRYPLALVLAPTRELASQIYDESKKFAYRSHVRPCVVYG 260

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF------ 406
                 + + LER      H+++GT     D ++  ++ L     +I+DE  R       
Sbjct: 261 GADIGGQMRDLER----GCHLLVGTPGRLVDMMERGRIGLDYIKYLILDEADRMLDMGFE 316

Query: 407 -------------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS--KITEK 451
                        G  +R  +   AT P  + M A       +  ++G +  +   IT+K
Sbjct: 317 PQIRRIVEQDTMPGTGKRRTMMFSATFPKEIQMLARDFLDNYIFLAVGRVGSTSDNITQK 376

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                     ++ ++  D+    L ++ + GK+       +E KK ++    +E F    
Sbjct: 377 ----------VVWVDEQDKRSFLLDLLNATGKEDSLTLTFVETKKGAD---SLEAFLYSE 423

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +  SSI   HG  S  ++E  + +F+ G   +L+AT V   G+D+ +   +I
Sbjct: 424 GYPVSSI---HGDRSQREREDALMTFRTGVTPILVATAVAARGLDIPNVKHVI 473


>gi|209885134|ref|YP_002288991.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
 gi|209873330|gb|ACI93126.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
          Length = 469

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 142/351 (40%), Gaps = 46/351 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI  +L     +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 23  TPTPIQEQAIPHVLA----RRDVLGIAQ--TGTGKTAAFVLPMLTMLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E I  Y    ++ + ++ G M    +   L R       I+I T   
Sbjct: 77  ILEPTRELAAQVQENIDHYCAGQKLNIALLIGGMSFGDQDAKLMR----GVDILIATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIP- 432
             D  +  KL+L     +++DE  R         +++  KL         L  TAT  P 
Sbjct: 133 LLDHTERGKLLLTGVEMLVIDEADRMLDMGFIPDIERICKLVPFTR--QTLFFTATMPPE 190

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSEGKKAYW 487
            R +  T L + +  +I+   +    +    I I        E++ +L     + K A  
Sbjct: 191 IRRITETFLHNPEKVEISRPASTATTVTQSQIGIGSDAHAKRELLRQLLRDAKDLKNAII 250

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C        +  R V     SL +H   + A+ HG M    + + +D F+ G   LL+A
Sbjct: 251 FC--------NRKRDVAILHKSLQKHGFGAAAL-HGDMDQSARMTALDQFRKGELPLLVA 301

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + V   G+D+ + S +   +  +     +H++ GR GR   + + I +  P
Sbjct: 302 SDVAARGLDIPEVSHVFNFDVPYHPDDYVHRI-GRTGRAGRLGTAISIVSP 351


>gi|53728793|ref|ZP_00348243.1| COG1061: DNA or RNA helicases of superfamily II [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 529

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 136/327 (41%), Gaps = 53/327 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++Q D G+GKT +    +A   E   QAVI+    IL +Q  E +     + +I+     
Sbjct: 22  LVQLDTGAGKTPI----IAKLAEYYQQAVIVCHRNILIKQASEKLAACGLHHRILASREI 77

Query: 357 GNMPQAHRRKAL-ERIAHGQAHIIIGT----HALFQDS---IQYYKLILVIVDEQHRFGV 408
             +  ++  +   +   + ++HI++ +    ++ F+ S     + K  +V++DE H F  
Sbjct: 78  KKIAASNNIEVFGKHFINPKSHIVLISIDTWNSQFKRSSLKFDFSKRYIVLIDESHHFAE 137

Query: 409 QQRLKLTQKATAPHVLLMTATPI-----PRTLVLTSLGDIDISKITEKPAGRKPIKT--- 460
           + +  L Q       +  +ATPI     P   V     D  +     K  G + +     
Sbjct: 138 ENKWDLLQNTLNARCIGFSATPIRNDGMPLLKVFNGFFDRIVQAEGYKENGTERLIAEGY 197

Query: 461 --------VIIPINRIDEVIERLKVVLS-------------EGKKAYWICPQIEEKKESN 499
                    ++    + E +  LK  +S             E K+A  I P+I      N
Sbjct: 198 LAQYQAFVAMVGDKSLSESVVDLKQEMSVAMPPIRAYMQFGENKQAILIVPRI-----LN 252

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            ++  E  N L+       A+IH  +   + + ++ +FK    K+L+A  +I  G DV D
Sbjct: 253 AKTECEALNKLN----IPAAVIHSELPQYEIQRILQAFKQKNIKILVAVDMISEGFDVPD 308

Query: 560 ASIIII-ENAEHFGLAQLHQLRGRVGR 585
           A I+++      FGL +  Q+ GRV R
Sbjct: 309 ADILLLYRKIRSFGLYR--QVCGRVLR 333


>gi|300812703|ref|ZP_07093112.1| ATP-dependent DNA helicase RecQ [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496330|gb|EFK31443.1| ATP-dependent DNA helicase RecQ [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 589

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 137/337 (40%), Gaps = 43/337 (12%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           ++I++ + Q   +L ++    G GK+L   I    A+   G  V+++P+  L +   + +
Sbjct: 22  REIIEKVFQGKNVLAVMP--TGGGKSLCYQIP---ALMIPGTTVVISPLISLMKDQVDSL 76

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLI 396
           ++Y     I    +  +  Q      L     G+  ++  T        F+  + + ++ 
Sbjct: 77  REYG----IPAAALNSSTAQEDVNPILRACYEGKIKLLYVTPERMEMDYFRYQLNFLEVN 132

Query: 397 LVIVDEQH---RFG-----VQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGD-IDI 445
           LV +DE H   ++G       ++LK    A  T P+VL +TAT      V   +G  +DI
Sbjct: 133 LVAIDEAHCISQWGHDFRPAYRKLKDGINALHTHPNVLALTATAT--KAVREDIGQQLDI 190

Query: 446 SK----ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           S+    IT         K V  P N    ++  LK    E    Y           SN R
Sbjct: 191 SEENFVITSFERKNLHFKLVNAPKNSRAYIVNYLKQHRGEAGIIY-----------SNTR 239

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             VE           ++A  H  +S+  +  V D F+     L++AT    +GID  +  
Sbjct: 240 KKVEGLTEFLRREGFNVAAYHAGISNEKRAQVQDDFQYDRIPLIVATNAFGMGIDKSNVR 299

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            ++  N+    L   +Q  GR GR    S  ++L+HP
Sbjct: 300 FVLHANSAK-NLEAYYQEAGRAGRDGLESEAVMLFHP 335


>gi|147821303|emb|CAN74586.1| hypothetical protein VITISV_041989 [Vitis vinifera]
          Length = 771

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 129/316 (40%), Gaps = 55/316 (17%)

Query: 302 VGSGKTLVALIAMAA--------AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   ++ M          A E G   VI AP   LA Q Y   KK+ +   I V 
Sbjct: 272 TGSGKTAAFVLPMIVHIMDQPELAKEEGPIGVICAPTRELAHQIYLESKKFAKPYGIRVS 331

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV-----IVDEQHR--- 405
            I G M +  + K L+        I+I T     D I+   L ++     ++DE  R   
Sbjct: 332 AIYGGMSKLEQFKELKS----GCEIVIATPGRLIDMIKMKALTMLRATYLVLDEADRMFD 387

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKP 457
             F  Q R  + Q       LL +AT +PR +      +LT                  P
Sbjct: 388 LGFEPQIRSIVGQIRPDRQTLLFSAT-MPRKVEKLAREILTD-----------------P 429

Query: 458 IKTVIIPINRIDEVIERL-KVVLSEGKKAYWIC---PQIEEKKE----SNFRSVVERFNS 509
           ++  +  +   +E I ++ +V+ S+ +K  W+    P + +  +    ++ ++ V+   S
Sbjct: 430 VRVTVGEVGMANEDITQVVQVIPSDAEKLPWLLDKLPGMIDDGDVLVFASKKATVDEIES 489

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                   IA +HG      +  ++  FK+G   +LIAT V   G+D+     ++  +  
Sbjct: 490 QLGQKGLKIAALHGDKDQASRMDILQKFKSGIYHVLIATDVAARGLDIKSIKSVVNFDIA 549

Query: 570 HFGLAQLHQLRGRVGR 585
               A +H++ GR GR
Sbjct: 550 RDMDAHVHRI-GRTGR 564


>gi|254472453|ref|ZP_05085853.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
           JE062]
 gi|211958736|gb|EEA93936.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
           JE062]
          Length = 453

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 143/350 (40%), Gaps = 47/350 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------AVEAGGQA 324
           PT  QE+AI  IL        +L + Q   G+GKT    + +          A     ++
Sbjct: 25  PTPIQENAIPYILDGKD----LLGLAQ--TGTGKTAAFAVPLLQRLLESRYRAAPKSVRS 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + IK Y   T++    + G +P   +  AL+R       +++ T  
Sbjct: 79  LILTPTRELADQITKNIKAYAGRTKMYTSCVVGGVPFPPQFHALQR----GLDVLVATPG 134

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR---TLV 436
              D      + + +L + ++DE       Q L L   A    +  +    +P+   TL 
Sbjct: 135 RLLDLHRKNGVSFDELEIFVLDE-----ADQMLDLGFIAELEEIAYL----LPKKRQTLF 185

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I  ++E+        +   P   ++ V +++  +  + K  + +  ++ EK 
Sbjct: 186 FSATMPREIRDLSERFLTNPVEVSTAPPATTVETVTQQIAHLEKDAK--FPLLKELLEKD 243

Query: 497 ESNFRSVV--------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           E   R++V         R  +           IHG MS  +++  +D FK G  K L+AT
Sbjct: 244 ECE-RALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLKTLVAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   GIDV D S +I  +  +     +H++ GR  R  +  + I    P
Sbjct: 303 DVAARGIDVSDISHVINFDMPNATENYVHRI-GRTARAGKSGTAITFCLP 351


>gi|238019379|ref|ZP_04599805.1| hypothetical protein VEIDISOL_01243 [Veillonella dispar ATCC 17748]
 gi|237864078|gb|EEP65368.1| hypothetical protein VEIDISOL_01243 [Veillonella dispar ATCC 17748]
          Length = 727

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 9/144 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           NIP   T +Q++  K I + M+       +L G  GSGKT + L A A  +     A+I+
Sbjct: 196 NIPL--TDAQQAVYKPIQEAMNSHQHKTFLLHGVTGSGKTQLYLKATARCISQDKTAIIL 253

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALF 386
            P  IL  Q    ++++ +     V +    +    R    ER+    +HIIIG   A+F
Sbjct: 254 VPEIILTDQ---IVRRFVETFGDEVVVFHSKLTVQQRNNNWERLRRKDSHIIIGARSAVF 310

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQ 410
             +     + L++VDE+H    +Q
Sbjct: 311 APA---EDIGLIVVDEEHDTSYKQ 331


>gi|159030016|emb|CAO90397.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 479

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 151/362 (41%), Gaps = 73/362 (20%)

Query: 272 SPTKSQESAIKDILQ--DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVI 326
           +PT+ Q  AI  +L+  DM        +     G+GKT    + +   ++      QA+I
Sbjct: 25  TPTEIQTKAIPLLLEGHDM--------VGMSQTGTGKTAAYSLPLLERMDTKNPNVQALI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ    IK ++ + ++ +  + G      + ++LE+       I++GT    
Sbjct: 77  LTPTRELAQQVASAIKDFSDDRRLFILTVCGGQSMERQIRSLEK----GVQIVVGTPGRV 132

Query: 387 QDSIQYYKL--------ILVIVDEQHRFG-VQQRLKLTQKATAPHVLLMTATPIPRTL-- 435
            D +   KL        +L   DE    G +    K+ Q + +       +  +PR +  
Sbjct: 133 IDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVKKILQASPSTRQTACFSATMPREIRD 192

Query: 436 -----------VLTSLGDIDISKITEK----PAGRKPIKTVIIPINRIDEVIERLKVVLS 480
                      V  S      +KI +K    P G   +K V+ P+  I E +E   + + 
Sbjct: 193 LIANFLKSPISVTVSQPQAAPAKIEQKIYMIPRGWTKLK-VLQPLLEI-EPLESAIIFVR 250

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             + A  +  +++E  ++     V+ +              HG +S + +E ++  F+ G
Sbjct: 251 TKQTAAELTSKLQEAGQT-----VDEY--------------HGNLSQVQRERLVQRFREG 291

Query: 541 TCKLLIATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             KL++AT +   G+DV + S +I     +NAE +    +H++ GR GR  +  + I L 
Sbjct: 292 KIKLVVATDIAARGLDVENLSHVINYDLPDNAETY----IHRI-GRTGRAGKTGTAISLV 346

Query: 597 HP 598
            P
Sbjct: 347 EP 348


>gi|25141235|ref|NP_036138.1| ATP-dependent RNA helicase DDX3Y [Mus musculus]
 gi|73620958|sp|Q62095|DDX3Y_MOUSE RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName:
           Full=D1Pas1-related sequence 1; AltName: Full=DEAD box
           protein 3, Y-chromosomal; AltName: Full=DEAD-box RNA
           helicase DEAD2; Short=mDEAD2
 gi|3790186|emb|CAA07483.1| DBY protein [Mus musculus]
 gi|18204785|gb|AAH21453.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Mus musculus]
 gi|148706201|gb|EDL38148.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_b
           [Mus musculus]
          Length = 658

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 171/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           ++ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 129 RSDEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGNNCPPHIENFSD 183

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-- 312
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+  
Sbjct: 184 IEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPI 237

Query: 313 -----------AMAAAVEAG--GQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
                      A+ A  E G  G+      ++++AP   LA Q YE  +K++  +++   
Sbjct: 238 LSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 297

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 298 VVYGGADTVQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 353

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 354 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 412

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  +D+    L ++ + GK +  +   +E KK ++    +E F    E +  
Sbjct: 413 NITQKVVWVEELDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLENF-LFQERY-- 465

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 466 ACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVI 513


>gi|307264798|ref|ZP_07546360.1| primosomal protein N' [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920056|gb|EFN50268.1| primosomal protein N' [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 732

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 20/202 (9%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           + I R  P S T+ Q+ A++++ + +        +L G  GSGKT V L  +  A++ G 
Sbjct: 184 KDIERTKPLSLTEEQKRAVEEVKKSILTGTFDKYLLFGVTGSGKTEVYLQLIDEAIKIGK 243

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F+ ++       V +I   +    R     ++ +G   +++G
Sbjct: 244 SAIVLVPEISLTPQTIERFVGRFGNR----VAVIHSGLSPGERFDEWRKVKNGLVDVVVG 299

Query: 382 T-HALFQDSIQYYKLILVIVDEQHRFGVQQ---RLKLTQKATAPH-------VLLM-TAT 429
             +A+F     +  L L+I+DE+H    +Q   R K   K  A         VL+M +AT
Sbjct: 300 VRNAVFA---PFNNLGLIIIDEEHETTYKQSDLRPKYNAKEVAEKRCEIEKAVLVMASAT 356

Query: 430 PIPRTLVLTSLGDIDISKITEK 451
           P   T    + G+  + ++T++
Sbjct: 357 PSLETYYKANKGEYKLIRLTKR 378


>gi|302519357|ref|ZP_07271699.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
 gi|302428252|gb|EFL00068.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
          Length = 492

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 130/318 (40%), Gaps = 33/318 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEA-GGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  GQ  A+++ P   LAQQ  + +  Y ++ ++ +
Sbjct: 110 RGRTGSGKTLAFGLALLARTAGKRAEAGQPLALVLVPTRELAQQVTDALTPYARSVRLRL 169

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRFG 407
             + G MP   +  AL R     A +++ T    +D I     +  ++ + ++DE     
Sbjct: 170 ATVVGGMPIGRQATALRR----GAEVLVATPGRLKDLIDRGHCRLDQVAVTVLDEAD--- 222

Query: 408 VQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                ++T     P V  LL    P  + ++ ++  D ++  +  +     P+   + P 
Sbjct: 223 -----QMTDMGFMPQVTALLDQVCPGGQRMLFSATLDRNVDLLVRRYL-NDPVVHSVDPS 276

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--FRSVVERFNSLHEHFTSS---IAI 520
                 +E   V+   G   + I  +I  +      F       + L EH   S    A 
Sbjct: 277 AGAVTTMEH-HVLHVHGADKHAIATEIAARDGRVLLFLDTKHAVDRLTEHLLRSGVRAAA 335

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG  S   +   ++ FK G   +L+AT V   GI V D  +++  +        LH+  
Sbjct: 336 LHGGKSQPQRTRTLEQFKTGHVSVLVATNVAARGIHVDDLDLVVNVDPPTDHKDYLHR-G 394

Query: 581 GRVGRGEEISSCILLYHP 598
           GR  R     S   L  P
Sbjct: 395 GRTARAGRSGSVATLVTP 412


>gi|218710815|ref|YP_002418436.1| primosome assembly protein PriA [Vibrio splendidus LGP32]
 gi|218323834|emb|CAV20195.1| primosomal protein N' [Vibrio splendidus LGP32]
          Length = 733

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 22/213 (10%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L N    P  ++E AI  I    SQ +    +L+G  GSGKT V L  +   ++ G QA+
Sbjct: 191 LENDQDKPKLNEEQAIA-IATVNSQTDFGCFLLEGVTGSGKTEVYLNMIKPILDQGKQAL 249

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH- 383
           ++ P IG+  Q     I ++ +   + VE+I   +  + R  A        A I+IGT  
Sbjct: 250 VLVPEIGLTPQT----INRFKRRFNVPVEVIHSGLNDSERLNAWLSARDKIAGIVIGTRS 305

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-----------TQKATAPHVLLMTATPIP 432
           ALF     +  L ++IVDE+H    +Q+  L             KA  P V+L +ATP  
Sbjct: 306 ALF---TPFADLGIIIVDEEHDASYKQQDSLRYHARDVAIMRAHKAQIP-VVLGSATPAF 361

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            TL    +G      +T +     P    ++ +
Sbjct: 362 ETLHNAQIGKYSYLTLTSRAGVALPTTNKVLDV 394


>gi|212710051|ref|ZP_03318179.1| hypothetical protein PROVALCAL_01104 [Providencia alcalifaciens DSM
           30120]
 gi|212687258|gb|EEB46786.1| hypothetical protein PROVALCAL_01104 [Providencia alcalifaciens DSM
           30120]
          Length = 468

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 144/327 (44%), Gaps = 52/327 (15%)

Query: 299 QGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIV 352
           Q   GSGKT    + +   ++A     Q++++ P   LA Q       + +Y  N +I+ 
Sbjct: 57  QAKTGSGKTAAFGLGLLQRIDAKNFNTQSLVLCPTRELADQVANELRRLARYIPNLKILT 116

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR-- 405
             + G +P + +R +L    H  AHI++ T       L ++++Q   L  +++DE  R  
Sbjct: 117 --LCGGVPFSVQRDSL---VHA-AHILVATPGRLLDHLHKETVQLDHLQTLVLDEADRML 170

Query: 406 -------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
                        F  + R  L   AT P  +   +  I +  +      I+I+ + E P
Sbjct: 171 DMGFADDIDAVISFTPEDRQTLLFSATWPDSIAAISQRIQKNPLT-----IEINSVNELP 225

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
                ++     + R D+ I+ L+ +LS  + A  +   +    + + ++V   +++L +
Sbjct: 226 ----DVEQQFYEVARHDK-IDLLQKLLSREQPASCV---VFCNTKKDCQAV---YDALMD 274

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               S+ ++HG M   D++  +  F NG+ ++L+AT V   G+D+    ++I  N E   
Sbjct: 275 S-NQSVLVLHGDMEQRDRDQTLVRFANGSSRVLVATDVASRGLDIKALEMVI--NFELSW 331

Query: 573 LAQLHQLR-GRVGRGEEISSCILLYHP 598
             ++H  R GR  R  +    I L  P
Sbjct: 332 DPEVHVHRIGRTARAGKSGLAISLCSP 358


>gi|198470572|ref|XP_001355346.2| GA10556 [Drosophila pseudoobscura pseudoobscura]
 gi|198145515|gb|EAL32403.2| GA10556 [Drosophila pseudoobscura pseudoobscura]
          Length = 939

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG  +  +++SV+  F+NG   +LIAT V   G+DV D   +I  +  +     +H++ 
Sbjct: 522 IHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRI- 580

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           GR GR +++ +    + P  +K +   +SVL+
Sbjct: 581 GRTGRCQQLGTAYTFFTPDNAKQARELISVLE 612


>gi|194466507|ref|ZP_03072494.1| primosomal protein N' [Lactobacillus reuteri 100-23]
 gi|194453543|gb|EDX42440.1| primosomal protein N' [Lactobacillus reuteri 100-23]
          Length = 809

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 17/172 (9%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P      Q++A+  I Q +   +  + +LQG  GSGKT V L ++A A+  G  A+++ P
Sbjct: 270 PLQLNADQQNAVNQINQAIDNHDPKVFLLQGVTGSGKTEVYLQSIANALHQGKTALMLVP 329

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQD 388
              L  Q    + +  +     V ++  ++    R     RI  G+A +++G   A+F  
Sbjct: 330 EISLTPQ---IVNRVRRRFGSKVAVLHSSLSNGERYDEWRRIERGEAQVVVGARSAVF-- 384

Query: 389 SIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP 430
                 L L+I+DE+H          R+  ++  K   K     V+L +ATP
Sbjct: 385 -APLTNLGLIILDEEHESSYKQDESPRYQAREVAKWRGKYNQAPVVLGSATP 435


>gi|26334341|dbj|BAC30888.1| unnamed protein product [Mus musculus]
          Length = 669

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 137/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 110 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 169

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     + +I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 170 LSVAC-FYGGTSYQSQ----INQIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 223

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 224 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 278

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 279 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 332

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 333 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 388

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      C+  Y P
Sbjct: 389 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICVCFYQP 426


>gi|221123566|ref|XP_002167654.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Hydra magnipapillata]
          Length = 685

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 129/340 (37%), Gaps = 64/340 (18%)

Query: 297 ILQGDVGSGKTL------VALIAMAAAVEAGGQAVIMA--PIGILAQQHYEFIKKYTQNT 348
           I+Q   G+GKTL      +  +      E G   +++A  P   LA Q Y+ ++K+  N 
Sbjct: 97  IVQARTGTGKTLAFTLPVIERLNSENLTERGRVPLVLALAPTRELAMQIYQEVEKFKPNN 156

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQ 403
            + V    G      +   L R        ++GT     D IQ       KL  VI+DE 
Sbjct: 157 -VQVSCFYGGSSYEKQEGELRR----GVDFLVGTPGRIADLIQRGVLDLTKLKHVILDEA 211

Query: 404 HRF---GVQQRLKLTQK-----ATAPHVLLMTATPIP------RTLVLTSLGDIDISKIT 449
            R    G Q  ++   K     A  P  LL +AT  P      +  + ++L   D+    
Sbjct: 212 DRMMDMGFQDDVEKILKHSYTSARKPQTLLFSATVPPWLQQNSKKYLSSNLKVFDLIG-E 270

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP-------QIEEKKESN--- 499
           +K  G   ++  +I                   K +YW  P       Q+   K      
Sbjct: 271 DKNKGATTVQHKVI-------------------KCSYWERPLLIKDIMQLYSGKFGKTII 311

Query: 500 FRSVVERFNSLH-EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           F +  +  N L  E       ++HG +S   +E  +  F+NG    LIAT V   G+D+ 
Sbjct: 312 FTTTKQEANELSVESSIPDSQVLHGDISQSQREITLQGFRNGKFNCLIATDVAARGLDIP 371

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +  ++I     +     +H+  GR GR      C++ Y P
Sbjct: 372 EVDLVIQTEPPNDIDFYIHRA-GRTGRAGRSGVCVVFYKP 410


>gi|210617215|ref|ZP_03291459.1| hypothetical protein CLONEX_03681 [Clostridium nexile DSM 1787]
 gi|210149416|gb|EEA80425.1| hypothetical protein CLONEX_03681 [Clostridium nexile DSM 1787]
          Length = 741

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 19/190 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T+ Q+ AI    +D  +  R   ++ G  GSGKT V +  +A+ ++ G QA+++ P I +
Sbjct: 206 TEEQQHAIDTFREDYLKGIRKTYLIYGVTGSGKTEVYMEMIASVIKEGKQAIVLIPEIAL 265

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F K++ +     + I+   M    R   + R   G   ++IG   ALF     
Sbjct: 266 TYQTVMRFYKRFGER----ISIMNSKMSSGERYDQMMRAKEGAIDVMIGPRSALF---TP 318

Query: 392 YYKLILVIVDEQHR--FGVQQRLKLTQKATA--------PHVLLMTATPIPRTLVLTSLG 441
           +  L L+++DE+H   +  +Q  +   + TA          V+L +ATP          G
Sbjct: 319 FANLGLIVIDEEHESTYKSEQIPRYHARETAVERAHLEGASVVLGSATPSLEAFYRAQKG 378

Query: 442 DIDISKITEK 451
           + ++ ++  +
Sbjct: 379 EYELLRLQNR 388


>gi|146340215|ref|YP_001205263.1| putative DEAD-box cold-shock protein, ATP-independent RNA helicase
           [Bradyrhizobium sp. ORS278]
 gi|146193021|emb|CAL77030.1| Putative DEAD-box cold-shock protein, ATP-independent RNA helicase
           [Bradyrhizobium sp. ORS278]
          Length = 634

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 133/329 (40%), Gaps = 46/329 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +AMAA +          A   A+I+AP   LA Q   E    Y  
Sbjct: 27  LVSAQTGSGKTVAYGLAMAANMLGEAERFGPAAAPLALIVAPTRELALQVQRELAWLYQH 86

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILV 398
               ++  + G  P+  +R+ LE      AHI++GT     D ++  +L        +L 
Sbjct: 87  AGARVISCVGGMDPRREQRE-LE----AGAHIVVGTPGRLCDHLRRGRLDISELKAVVLD 141

Query: 399 IVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDIS---KITEKPA 453
             DE    G ++ L+   + T      LL +AT  PR +V  +    D +   ++     
Sbjct: 142 EADEMLNLGFREDLEFILETTPETRRTLLFSAT-FPRGIVALAKQYQDDAFRIEVEGDEG 200

Query: 454 GRKPIKTVIIPINRIDE---VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           G   I+   I I   D    V+  L+    E   A   C         N R  V    + 
Sbjct: 201 GHADIEYRAIRIAPDDAEHAVVNLLR--FYESPSAIVFC---------NTREAVRHLQAA 249

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 S+  + G ++  ++   + S ++G  ++ +AT V   GID+ +  ++I  +AE 
Sbjct: 250 LLERGFSVVALSGELTQNERTMALQSLRDGRSRVCVATDVAARGIDLANLDLVI--HAEL 307

Query: 571 FGLAQLHQLR-GRVGRGEEISSCILLYHP 598
               ++ Q R GR GR       +LL  P
Sbjct: 308 PNDPEVMQHRSGRTGRAGRKGVSVLLVSP 336


>gi|124088187|ref|XP_001346998.1| RNA helicase [Paramecium tetraurelia strain d4-2]
 gi|145474579|ref|XP_001423312.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057387|emb|CAH03371.1| RNA helicase, putative [Paramecium tetraurelia]
 gi|124390372|emb|CAK55914.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1157

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 134/332 (40%), Gaps = 55/332 (16%)

Query: 300 GDVGSGKTLVALIAM--------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL  L+ +        A     G  A+IMAP   LA Q Y   + +T    + 
Sbjct: 548 AETGSGKTLAYLLPLLRHVLDQPALKDGDGPIAIIMAPTRELAHQIYVNCRWFTSILNLN 607

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQ 403
           V    G    A +   L+R       I++ T     D +           ++  V++DE 
Sbjct: 608 VVCCVGGAGIAGQLSDLKR----GTEIVVCTPGRMIDVLTTSNGKITNLRRVTYVVIDEA 663

Query: 404 HR---FGVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            R    G + Q  K+ Q       L+M +   P+ +   +           K   RKPI+
Sbjct: 664 DRMFDLGFEPQICKIIQNIRPDRQLVMFSATFPKNVEQLA-----------KRVLRKPIE 712

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAY--------WICPQ-----IEEKKESNFRSVVER 506
            ++    +    IE++   + E  K Y        W         +E++ E++     + 
Sbjct: 713 CIVGGRGQAGGNIEQIIEFMDESDKLYKLLLLFQEWYTKGSILIFVEKQTEAD-----DL 767

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F  L ++   S  ++HG M   D+E  +  FK G   +++AT+V+  G+D+    ++I  
Sbjct: 768 FKELLKYGYKSF-VLHGGMDPQDREFTIHDFKKGIRTIMVATSVLARGLDIKHICLVINF 826

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +  +     +H++ GR GR  +  + I  + P
Sbjct: 827 SCPNHMEDYIHRI-GRTGRAGQKGTAITFFTP 857


>gi|124810293|ref|XP_001348829.1| helicase 45 [Plasmodium falciparum 3D7]
 gi|23497730|gb|AAN37268.1| helicase 45 [Plasmodium falciparum 3D7]
 gi|83272531|gb|ABC00776.1| eIF4A-like [Plasmodium falciparum]
 gi|112434012|gb|ABI18354.1| eIF4A-like [Plasmodium falciparum]
          Length = 398

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 148/353 (41%), Gaps = 55/353 (15%)

Query: 261 IAQKILRNIPFS-----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           + +K+LR I +S     P+  Q+  IK IL      N    I Q   G+GKT   +I+  
Sbjct: 30  LNEKLLRGI-YSYGFEKPSAIQQRGIKPIL------NGYDTIGQAQSGTGKTATFVISSL 82

Query: 316 AAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
             +       QA+I+AP   LAQQ  + +       ++      G       R+ ++++ 
Sbjct: 83  QLINYDYVACQALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVV---REDIDKLK 139

Query: 373 HGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF---GVQQRLKLTQKATAP--H 422
            G  H+++GT     D I        +L L I+DE       G + ++    K   P   
Sbjct: 140 QG-VHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQ 198

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           V L +AT     L LT+       +    P      KT+++  + +   +E ++      
Sbjct: 199 VALFSATMPQEILELTT-------RFMRDP------KTILVKKDEL--TLEGIRQFYVAV 243

Query: 483 KKAYWICPQIEEKKES----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           +K  W    + +  E+          N R  V+       +   +++ +HG M   D++ 
Sbjct: 244 EKEEWKLDTLCDLYETLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDL 303

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +M  F++G+ ++L+ T ++  GIDV   S++I  +        +H++ GR GR
Sbjct: 304 IMREFRSGSTRVLVTTDLLARGIDVQQVSLVINYDLPASPDTYIHRI-GRSGR 355


>gi|262164692|ref|ZP_06032430.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
 gi|262027072|gb|EEY45739.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
          Length = 430

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 118/278 (42%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E +        +    + G
Sbjct: 62  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTPLGLNTLCLCG 121

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +A ++ AL        +I++ T      L Q  +   ++  +++DE  R        
Sbjct: 122 GVDKAEQQNALAE----NPNILVATTGRLFDLTQSGLSLNRVTTLVLDEADR-------- 169

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +     P +    P N I++ +
Sbjct: 170 LLDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMHAPTQVSANPENSINQAV 229

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSSIAI---IHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +  +   +HG  S
Sbjct: 230 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGVVATALHGDKS 289

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             ++E+ +  FKNG+ ++LIAT ++  GI +    ++I
Sbjct: 290 QTEREAALAEFKNGSTQVLIATDLLARGIHIEQLPVVI 327


>gi|156099810|ref|XP_001615701.1| RNA helicase-1 [Plasmodium vivax SaI-1]
 gi|5679692|emb|CAB51741.1| RNA helicase-1 [Plasmodium cynomolgi]
 gi|148804575|gb|EDL45974.1| RNA helicase-1, putative [Plasmodium vivax]
          Length = 398

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 148/353 (41%), Gaps = 55/353 (15%)

Query: 261 IAQKILRNIPFS-----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           + +K+LR I +S     P+  Q+  IK IL      N    I Q   G+GKT   +I+  
Sbjct: 30  LNEKLLRGI-YSYGFEKPSAIQQRGIKPIL------NGYDTIGQAQSGTGKTATFVISSL 82

Query: 316 AAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
             +       QA+I+AP   LAQQ  + +       ++      G       R+ ++++ 
Sbjct: 83  QLINYDYVACQALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVV---REDIDKLK 139

Query: 373 HGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF---GVQQRLKLTQKATAP--H 422
            G  H+++GT     D I        +L L I+DE       G + ++    K   P   
Sbjct: 140 QG-VHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQ 198

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           V L +AT     L LT+       +    P      KT+++  + +   +E ++      
Sbjct: 199 VALFSATMPQEILELTT-------RFMRDP------KTILVKKDEL--TLEGIRQFYVAV 243

Query: 483 KKAYWICPQIEEKKES----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           +K  W    + +  E+          N R  V+       +   +++ +HG M   D++ 
Sbjct: 244 EKEEWKLDTLCDLYETLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDL 303

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +M  F++G+ ++L+ T ++  GIDV   S++I  +        +H++ GR GR
Sbjct: 304 IMREFRSGSTRVLVTTDLLARGIDVQQVSLVINYDLPCSPDTYIHRI-GRSGR 355


>gi|189500369|ref|YP_001959839.1| primosomal protein N' [Chlorobium phaeobacteroides BS1]
 gi|189495810|gb|ACE04358.1| primosomal protein N' [Chlorobium phaeobacteroides BS1]
          Length = 812

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/297 (20%), Positives = 126/297 (42%), Gaps = 27/297 (9%)

Query: 200 PSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           P  AEA   +H+     +  W+ P  E++     +A ++    + +  K E+    +   
Sbjct: 213 PRQAEAVRRLHD----LEMSWSFP--EQIGTKAAIARELVKKGIFESLKVEVDSGFSSGF 266

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
              +KI++N+    T +Q+SA++ ++           +L G  GSGKT++ +  +   + 
Sbjct: 267 TEPKKIIKNL----TGAQQSALESLIAGFRTGTFSTSLLHGITGSGKTIIYIELLKEVLS 322

Query: 320 AGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           AG  A+++ P I +  Q    F + +  N    ++I+   M    +  A  ++  G+A I
Sbjct: 323 AGKSAIVLVPEISLTPQTASRFRQHFGDN----IQILHSAMNNQEKYNAWHKLRTGKAKI 378

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTA 428
            +G  +     ++   +  +IVDE+H          R+  +    +  K      +L +A
Sbjct: 379 ALGARSTIFAPLE--NVGAIIVDEEHDSAYKQDRTPRYHGRDTAVMRAKLENAICVLGSA 436

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           TP   +      G  ++ ++ E+  G       ++P+    ++   L  VL E  KA
Sbjct: 437 TPSFESFHNAETGKYNLLRLPERVDGASIPSVKLVPLRENRKISFSLSEVLYEQIKA 493



 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 9/112 (8%)

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
           IE LK VLS GK A  + P+I    ++  R          +HF  +I I+H  M++ +K 
Sbjct: 314 IELLKEVLSAGKSAIVLVPEISLTPQTASR--------FRQHFGDNIQILHSAMNNQEKY 365

Query: 532 SVMDSFKNGTCKL-LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           +     + G  K+ L A + I   ++ V A I+  E+   +   +  +  GR
Sbjct: 366 NAWHKLRTGKAKIALGARSTIFAPLENVGAIIVDEEHDSAYKQDRTPRYHGR 417


>gi|293393518|ref|ZP_06637828.1| DNA replication factor Y [Serratia odorifera DSM 4582]
 gi|291423853|gb|EFE97072.1| DNA replication factor Y [Serratia odorifera DSM 4582]
          Length = 731

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 24/197 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ +     VE++
Sbjct: 220 LLAGVTGSGKTEVYLSVLENILAKGRQALVLVPEIGLTPQT----IARFRERFNAPVEVL 275

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
              +  + R     R   G+A I+IGT  ALF     + +L ++I+DE+H          
Sbjct: 276 HSGLNDSERLAVWLRARSGEAAIVIGTRSALF---TPFARLGVIIIDEEHDSSYKQQEGW 332

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           R+  +        A    +++ +ATP   TL    LG     K+T++    KP    +I 
Sbjct: 333 RYHARDLAVFRAHAENIPMVMGSATPALETLHNVQLGKYRQLKLTQRAGNAKPAAQHLID 392

Query: 465 INRIDEVIERLKVVLSE 481
           +  +      LKV LS+
Sbjct: 393 LKGLP-----LKVGLSQ 404


>gi|187779372|ref|ZP_02995845.1| hypothetical protein CLOSPO_02968 [Clostridium sporogenes ATCC
           15579]
 gi|187772997|gb|EDU36799.1| hypothetical protein CLOSPO_02968 [Clostridium sporogenes ATCC
           15579]
          Length = 374

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 151/353 (42%), Gaps = 58/353 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           PT  QE +I      M  KN    I +   G+GKTL  L+ M   +       Q +I+ P
Sbjct: 25  PTPIQEESI------MLIKNGNDVIAEAQTGTGKTLAFLLPMFENISPDINAIQGLIITP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA----- 384
              LA Q  E   K  +   + +    G      + K L+       H++I T       
Sbjct: 79  TRELAIQITEEAMKLKKAKDLNILAAYGGKDIGSQIKKLK----NNIHLVIATPGRLLDH 134

Query: 385 LFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSL 440
           L ++++ +  L  +++DE       G +  ++           ++  TP  R TL  ++ 
Sbjct: 135 LNRNTLNFKDLKTLVLDEADEMLLMGFKNEVRS----------IIDNTPRKRQTLCFSAT 184

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL---SEGKKAYWICPQIEEKKE 497
            + ++ K+  K   R P K VII    +   ++ +K VL   ++ +K   +C  ++E  E
Sbjct: 185 MNSEVKKLAYKNM-RDP-KLVIIEKEEV--TLKNIKQVLIETTDRRKQEDLCKILDE--E 238

Query: 498 SNFRSVV-----ERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           + F +++      R ++L E       +   +HG ++   +E +M SFKN   + LIAT 
Sbjct: 239 NPFMAIIFCRTKRRVDNLEEDLYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATD 298

Query: 550 VIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           V   G+D+   + +    I ENAE +    +H++ GR GR  E     L   P
Sbjct: 299 VAARGLDITGVTHVFNYDIPENAESY----IHRI-GRTGRAGEKGYTFLFVAP 346


>gi|310831360|ref|YP_003970003.1| putative superfamily II helicase/eIF-4AIII [Cafeteria roenbergensis
           virus BV-PW1]
 gi|309386544|gb|ADO67404.1| putative superfamily II helicase/eIF-4AIII [Cafeteria roenbergensis
           virus BV-PW1]
          Length = 384

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 137/313 (43%), Gaps = 46/313 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IV 352
           ILQ   G+GKT   L+     ++    G Q VI+ P   LA+Q Y+  KK  + T + IV
Sbjct: 49  ILQSQSGTGKTATYLLGTLHNLDEQTKGIQTVIITPTRELAEQVYDVAKKLAKYTNLKIV 108

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDE----- 402
             + G    + +R+A+      Q+H++IGT     H + ++     +L  + +DE     
Sbjct: 109 LCVGGTNIGSFKREAV------QSHLLIGTIGRIYHMMEENVFSLEQLKQLTLDEADSLL 162

Query: 403 QHRFG--VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           + ++G  V   +K T +      L  T     R +  + L + ++  + ++    K IK 
Sbjct: 163 EKKYGNKVYDLIKQTPQKCQKCFLSATVNRNLREISKSVLDNPELVLLKKEDIQVKAIKN 222

Query: 461 VIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             +       + D +++  +++ +        C  I +         +E   +  E    
Sbjct: 223 FYLDTVEEEYKFDTLLDLYQIIST--SHTMIFCNSINK---------IEFVKNKLEEEGF 271

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFG 572
               IHG +   ++  ++D F+ G  ++L+ T ++  GID+ +  ++I     +N E F 
Sbjct: 272 PTTTIHGGLEQEERSKIVDEFREGKTRILLTTDLLARGIDIPEVKLVINYDLPKNHETF- 330

Query: 573 LAQLHQLRGRVGR 585
              +H++ GR GR
Sbjct: 331 ---IHRI-GRSGR 339


>gi|258622228|ref|ZP_05717254.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM573]
 gi|258585552|gb|EEW10275.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM573]
          Length = 434

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 116/278 (41%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E +        +    + G
Sbjct: 66  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTPLGLNTLCLCG 125

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +  ++ AL        +I++ T      L Q  +   ++  +++DE  R        
Sbjct: 126 GVDKTEQQNALAE----NPNILVATTGRLFDLTQSGLSLNRVTTLVLDEADR-------- 173

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 174 LLDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAV 233

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ +      F    E  + L +    +      +HG  S
Sbjct: 234 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADGLTKKLNKAGIVATALHGDKS 293

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             ++E+ +  FKNGT ++LIAT ++  GI +    ++I
Sbjct: 294 QAEREAALAEFKNGTTQVLIATDLLARGIHIEQLPVVI 331


>gi|229528115|ref|ZP_04417506.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229334477|gb|EEN99962.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
          Length = 416

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 119/278 (42%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E + +      +    + G
Sbjct: 54  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCG 113

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +  ++ AL        +I++ T      L Q  ++  ++  +++DE  R        
Sbjct: 114 GVDKTEQQNALAE----NPNILVATTGRLFDLTQSGLRLNRVTTLVLDEADR-------- 161

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 162 LLDMGFWPQVQALASQTAGVRQTVMCSATFSDDLKLKAQQLMRVPTQVSANPENSINQAV 221

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +      +HG  S
Sbjct: 222 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKS 281

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             ++E+ +  FKNG+ ++LIAT ++  GI +    ++I
Sbjct: 282 QSEREAALAEFKNGSTQVLIATDLLARGIHIEQLPVVI 319


>gi|229514398|ref|ZP_04403859.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|229348378|gb|EEO13336.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
          Length = 416

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 119/278 (42%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E + +      +    + G
Sbjct: 54  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCG 113

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +  ++ AL        +I++ T      L Q  ++  ++  +++DE  R        
Sbjct: 114 GVDKTEQQNALAE----NPNILVATTGRLFDLTQSGLRLNRVTTLVLDEADR-------- 161

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 162 LLDMGFWPQVQALASQTAGVRQTVMCSATFSDDLKLKAQQLMRVPTQVSANPENSINQAV 221

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +      +HG  S
Sbjct: 222 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKS 281

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             ++E+ +  FKNG+ ++LIAT ++  GI +    ++I
Sbjct: 282 QSEREAALAEFKNGSTQVLIATDLLARGIHIEQLPVVI 319


>gi|188587876|ref|YP_001920681.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498157|gb|ACD51293.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 480

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 146/341 (42%), Gaps = 41/341 (12%)

Query: 264 KILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---E 319
           K + N+ + +P++ QE AI +IL     +N+ L +++   GSGKT    I +   +   E
Sbjct: 16  KAIDNLGYKTPSEVQEKAIPEIL-----RNKDL-VVKSQTGSGKTASFGIPLCEKIDWDE 69

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q +++AP   LA Q  E I    +  +I    I G      + + L++    + HI+
Sbjct: 70  NKPQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ----KTHIV 125

Query: 380 IGTHALFQD-----SIQYYKLILVIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATP 430
           +GT     D     S+   K+   ++DE         ++Q   + ++     V L+ +  
Sbjct: 126 VGTPGRVLDHIDRGSLDVSKINYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTLLFSAT 185

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IP           +I  + +K   R PI   I   N   + +      +   +K   +  
Sbjct: 186 IPD----------EIKNLCDKHMNR-PIDIAIKSQNLTSDNVSHYAYHVGYNQKLDLLNN 234

Query: 491 -QIEEKKESN--FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             I E  E++  F    E  +++HE+      S   IHG M   D+   M+ F+ G  ++
Sbjct: 235 ILISEMPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRI 294

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           L+AT +   GID+   + +I  +      A +H++ GR GR
Sbjct: 295 LVATDIASRGIDIEGITHVINYDIPVEKEAYVHRI-GRTGR 334


>gi|166365637|ref|YP_001657910.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
 gi|166088010|dbj|BAG02718.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
          Length = 479

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 151/362 (41%), Gaps = 73/362 (20%)

Query: 272 SPTKSQESAIKDILQ--DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVI 326
           +PT+ Q  AI  +L+  DM        +     G+GKT    + +   ++      QA+I
Sbjct: 25  TPTEIQTKAIPLLLEGHDM--------VGMSQTGTGKTAAYSLPLLERMDTKNPNVQALI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ    IK ++ + ++ +  + G      + ++LE+       I++GT    
Sbjct: 77  LTPTRELAQQVASAIKDFSDDRRLFILTVCGGQSMERQIRSLEK----GVQIVVGTPGRV 132

Query: 387 QDSIQYYKL--------ILVIVDEQHRFG-VQQRLKLTQKATAPHVLLMTATPIPRTL-- 435
            D +   KL        +L   DE    G +    K+ Q + +       +  +PR +  
Sbjct: 133 IDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVKKILQASPSTRQTACFSATMPREIRD 192

Query: 436 -----------VLTSLGDIDISKITEK----PAGRKPIKTVIIPINRIDEVIERLKVVLS 480
                      V  S      +KI +K    P G   +K V+ P+  I E +E   + + 
Sbjct: 193 LIANFLKSPISVTVSQPQAAPAKIEQKIYLIPRGWTKLK-VLQPLLEI-EPLESAIIFVR 250

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             + A  +  +++E  ++     V+ +              HG +S + +E ++  F+ G
Sbjct: 251 TKQTAAELTSKLQEAGQT-----VDEY--------------HGNLSQVQRERLVQRFREG 291

Query: 541 TCKLLIATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             KL++AT +   G+DV + S +I     +NAE +    +H++ GR GR  +  + I L 
Sbjct: 292 KIKLVVATDIAARGLDVENLSHVINYDLPDNAETY----IHRI-GRTGRAGKTGTAISLV 346

Query: 597 HP 598
            P
Sbjct: 347 EP 348


>gi|218532791|ref|YP_002423607.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218525094|gb|ACK85679.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 568

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 143/347 (41%), Gaps = 46/347 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAA-------AVEAGGQ--AVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A        A+   G   A+++AP   LA Q   E    Y Q
Sbjct: 39  LVSAQTGSGKTVAFGLAIAGTLLSEDEALPPPGAPLALVIAPTRELALQVQRELTWLYAQ 98

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVD 401
               IV  + G  P   RR+A  R      HI++GT    +D ++  +L+      VI+D
Sbjct: 99  TGARIVPCVGGMDP---RREA--RALEAGVHIVVGTPGRLRDHMERGRLVTEGLRAVILD 153

Query: 402 EQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGR 455
           E       G ++ L+    +T      LL +AT +P+ +V L      D  ++      R
Sbjct: 154 EADEMLDMGFREDLEFILASTPKDRRTLLFSAT-LPKAIVALAESYQRDALRLAVAGETR 212

Query: 456 KPIKTV-----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN-S 509
                V     ++P      V+  L+ V  +   A   C         N R  V     S
Sbjct: 213 GHADIVYRAVRVMPREVEHAVVNILRYV--DAPVAIVFC---------NTRDGVRHLQAS 261

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L E   S++A+  G +   ++ + + + ++G  ++ +AT V   GID+    ++I  +  
Sbjct: 262 LTERGFSAVAL-SGELGQGERNAALQALRDGRARVCVATDVAARGIDLPGLDLVIHADLP 320

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           H      H+  GR GR     + ++L  P   + +    ++ K + D
Sbjct: 321 HDAEVMQHR-SGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIAKVSPD 366


>gi|254563809|ref|YP_003070904.1| ATP-independent RNA helicase, DEAD/DEAH-box family protein
           [Methylobacterium extorquens DM4]
 gi|254271087|emb|CAX27094.1| putative ATP-independent RNA helicase, DEAD/DEAH-box family protein
           [Methylobacterium extorquens DM4]
          Length = 568

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 143/347 (41%), Gaps = 46/347 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAA-------AVEAGGQ--AVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A        A+   G   A+++AP   LA Q   E    Y Q
Sbjct: 39  LVSAQTGSGKTVAFGLAIAGTLLGEDEALPPPGAPLALVIAPTRELALQVQRELTWLYAQ 98

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVD 401
               IV  + G  P   RR+A  R      HI++GT    +D ++  +L+      VI+D
Sbjct: 99  TGARIVPCVGGMDP---RREA--RALEAGVHIVVGTPGRLRDHMERGRLVTEGLRAVILD 153

Query: 402 EQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGR 455
           E       G ++ L+    +T      LL +AT +P+ +V L      D  ++      R
Sbjct: 154 EADEMLDMGFREDLEFILASTPKDRRTLLFSAT-LPKAIVALAESYQRDALRLAVAGETR 212

Query: 456 KPIKTV-----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN-S 509
                V     ++P      V+  L+ V  +   A   C         N R  V     S
Sbjct: 213 GHADIVYRAVRVMPREVEHAVVNILRYV--DAPVAIVFC---------NTRDGVRHLQAS 261

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L E   S++A+  G +   ++ + + + ++G  ++ +AT V   GID+    ++I  +  
Sbjct: 262 LTERGFSAVAL-SGELGQGERNAALQALRDGRARVCVATDVAARGIDLPGLDLVIHADLP 320

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           H      H+  GR GR     + ++L  P   + +    ++ K + D
Sbjct: 321 HDAEVMQHR-SGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIAKVSPD 366


>gi|260945385|ref|XP_002616990.1| hypothetical protein CLUG_02434 [Clavispora lusitaniae ATCC 42720]
 gi|238848844|gb|EEQ38308.1| hypothetical protein CLUG_02434 [Clavispora lusitaniae ATCC 42720]
          Length = 397

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 124/291 (42%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I M  A++      QA++++P   LA Q +  I+       I   
Sbjct: 66  IAQAQSGTGKTATFSIGMLQAIDWNVRQCQALVLSPTRELAIQIHNVIRNLGTYMNIHTH 125

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRF-- 406
              G          L+++  GQ HI+ GT     D I+   L      ++I+DE      
Sbjct: 126 ACIGGKQVG---DDLKKLNQGQ-HIVSGTPGRVLDVIKRRNLATRNVQMLILDEADELMT 181

Query: 407 -GVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G ++++    +   +   V++++AT     L +TS       K T  P        V I
Sbjct: 182 KGFKEQIYEIYRHLPSTVQVVVVSATLTREVLEITS-------KFTTDP--------VKI 226

Query: 464 PINRIDEVIERLKVVLSEGKKAYW----ICPQIEEKKESN---FRSVVERFNSLHEHFTS 516
            + + D  +E +K    + +K  W    +C   +    +    F +   + N L +    
Sbjct: 227 LVKKEDVTLEGIKQYHIQCEKEEWKFDTLCDLYDSLTITQAVIFCNTKSKVNWLADQLRK 286

Query: 517 S---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   ++ +HG M   +++S+M+ F+ G  ++LI+T V   GIDV   S++I
Sbjct: 287 ANFAVSSMHGDMKQEERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVI 337


>gi|195565659|ref|XP_002106416.1| GD16140 [Drosophila simulans]
 gi|194203792|gb|EDX17368.1| GD16140 [Drosophila simulans]
          Length = 800

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG  +  +++SV+  F+NG   +LIAT V   G+DV D   +I  +  +     +H++ 
Sbjct: 522 IHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRI- 580

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           GR GR +++ +    + P  +K +   +SVL+
Sbjct: 581 GRTGRCQQLGTAYTFFTPDNAKQARELISVLE 612


>gi|61563575|gb|AAX46760.1| putative DEAD-box family RNA helicase PL10 [Carassius auratus]
          Length = 582

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 96/435 (22%), Positives = 177/435 (40%), Gaps = 93/435 (21%)

Query: 216 KDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK------------- 260
            D +W+ P    ER+ ++    G   +      F+K   IP+   G+             
Sbjct: 154 NDEDWSKPLPPSERVEHELFSGGNTGI-----NFEKYDDIPVEATGQNCPPHIESFHDVD 208

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV------- 309
           + + I+ NI  S    PT  Q+ AI  I      K  ++   Q   GSGKT         
Sbjct: 209 MGEIIMGNITLSRYTRPTPVQKYAIPII----KTKRDLMACAQ--TGSGKTAAFLLPVLS 262

Query: 310 ---------ALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQII 351
                    AL AM  + +  G+         ++++AP   LA Q YE  +K    + + 
Sbjct: 263 QIFTEGPGEALQAMKNSAQENGKYGRRKQYPISLVLAPTRELALQIYEEARKVAYRSHVR 322

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
             ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R 
Sbjct: 323 PCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRM 378

Query: 406 ----FGVQQRLKLTQKATAPHVL---LMTATPIPRTLVLTS---LGDIDISKITEKPAGR 455
               F  Q R  + Q    P  L   +M +   P+ + + +   L +     +    +  
Sbjct: 379 LDMGFEPQIRRIVEQDTMPPKGLRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTS 438

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           + I   ++ +   D+    L ++ + GK++  +   +E KK ++    +E F  L+    
Sbjct: 439 ENITQKVVWVEENDKRSFLLDLLNATGKESLTLV-FVETKKGAD---SLEDF--LYREGY 492

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           S  +I HG  +  D+E  +  F++G C +L+AT V   G+D+ +   +I     +F L+ 
Sbjct: 493 SCTSI-HGDRTQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVI-----NFDLSS 546

Query: 576 -----LHQLRGRVGR 585
                +H++ GR GR
Sbjct: 547 DIEEYVHRI-GRTGR 560


>gi|312870458|ref|ZP_07730578.1| DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus oris
           PB013-T2-3]
 gi|311094015|gb|EFQ52339.1| DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus oris
           PB013-T2-3]
          Length = 457

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 144/352 (40%), Gaps = 53/352 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMAP 329
           PT  QE  I DIL   S       + Q   GSGKT   L+ + + ++   Q   AVI  P
Sbjct: 27  PTAVQERVIPDILAGKSV------VGQSATGSGKTHAFLLPLFSRIDPAVQEVQAVITTP 80

Query: 330 IGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
              LA Q Y   K+  Q  +  + +    G   + H+   LER    Q  ++IGT     
Sbjct: 81  SRELAYQIYNAAKQLNQFADQPLTIHNYVGGTDKQHQIAQLER---KQPQLVIGTPGRVL 137

Query: 388 DSIQYYKL-----ILVIVDEQH---RFG-VQQRLKLTQKATAPHVLLMTATPIP---RTL 435
           D I+   L      + +VDE       G ++Q  ++  +      +++ +  IP   R  
Sbjct: 138 DLIKSQHLDVHTATMFVVDEADMTLDMGFLEQVDQIAGRFPENLQMMVFSATIPEKLRPF 197

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA--YWICPQIE 493
           +   + +  I +I        P  TVI P     +V   L       +    Y +    E
Sbjct: 198 LKKYMANPVIEEI--------PTATVINP-----DVENWLLSTKGHDRNQLIYQLLTMGE 244

Query: 494 EKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                 F +  ER   L  + +     +A+IHG +    ++ VM   +N   + ++AT +
Sbjct: 245 PYLALVFANTKERAEELTRYLSEQGLKVALIHGGLEPRRRKRVMRQIRNLDYQYVVATDL 304

Query: 551 IEVGIDVVDASIIIIE----NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              GID+   S++I +    + E+F    +H++ GR GR +   + I LY P
Sbjct: 305 AARGIDIDGVSLVINDDLPTDLEYF----VHRV-GRTGRNQMTGTAITLYEP 351


>gi|19387225|gb|AAL87143.1|AF479824_1 DEAD box RNA helicase Vasa [Melanotaenia fluviatilis]
          Length = 400

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 139/334 (41%), Gaps = 58/334 (17%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+ +   + A G            +A+I+AP   L  Q +   +K++  T 
Sbjct: 6   TGSGKTAAFLLPILQQLMADGVAASHFSDIQEPEAIIVAPTRELINQIFLEARKFSYGTC 65

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQH 404
           +   ++ G +   H+ + + R      +++ GT     D      I   KL  +++DE  
Sbjct: 66  VRPVVVYGGVSTGHQIREISR----GCNVVCGTPGRLLDLIGRGKIGLSKLRYLVLDEAD 121

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK------- 451
           R        +     AP +  +  +P +P     +TL+ ++    DI ++          
Sbjct: 122 R--------MLDMGFAPDMRRLVGSPGMPSKENRQTLMFSATYPDDIQRMAADFMKADYL 173

Query: 452 -------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
                        ++   I + +  +  + L+++ + G +   +   +E K++++F +V 
Sbjct: 174 FLAVGIVGGACTDVEQTFIQVTKFSKREQLLELLKTTGMERTMVF--VETKRQADFIAV- 230

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             F    +  T+SI   HG     ++E  +  F++G C +L+AT+V   G+D+ D   ++
Sbjct: 231 --FLCQEKVSTTSI---HGDREQREREQALGDFRSGKCPVLVATSVAARGLDIPDVQHVV 285

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             +  +     +H++ GR GR       I  Y P
Sbjct: 286 NFDLPNNIDEYVHRI-GRTGRCGNTGRAISFYDP 318


>gi|291557817|emb|CBL34934.1| primosomal protein N' [Eubacterium siraeum V10Sc8a]
          Length = 824

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 14/188 (7%)

Query: 264 KILRNIPFSPTKSQESAIKDILQD-MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           K +R+I       ++SA+   + + M  +     +L+G  GSGKT V L  +  A++ G 
Sbjct: 275 KAVRSIDDIVLSDEQSAVYSGMSELMDSQKPQCALLKGVTGSGKTTVFLKLIDKALKQGK 334

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F   +  N    V +I  N+    R    +RI  G+A I+IG
Sbjct: 335 TALMLVPEISLTPQMVRNFTDLFGSN----VAVIHSNLSLGQRTDEYKRIEKGEARIVIG 390

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH--------VLLMTATPIPR 433
           T +     +    +I++  + +H +  ++  +   ++ A          +LL +ATP   
Sbjct: 391 TRSAVFAPLDNIGIIVIDEEGEHTYKSEKSPRYQARSIAKQRCFYHNATLLLASATPSLE 450

Query: 434 TLVLTSLG 441
           +    S+G
Sbjct: 451 SAYFASIG 458


>gi|224081379|ref|XP_002306390.1| predicted protein [Populus trichocarpa]
 gi|222855839|gb|EEE93386.1| predicted protein [Populus trichocarpa]
          Length = 402

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 42/287 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT +  + +   V+      QA+I++P   LA+Q    I    +N  I V 
Sbjct: 60  IAQAQSGTGKTSMIALTVCQLVDTASREVQALILSPTRELAEQTQRVITVIGENINIQVH 119

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL----ILVIV----DEQHR 405
              G        + LE   HG  H++ GT     D I+   L    I V+V    DE   
Sbjct: 120 ACIGGKSVGEDIRKLE---HG-VHVVSGTPGRVCDMIKRRSLRTRAIRVLVLDESDEMLS 175

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V+L++AT     L +TS    D            P+K   I
Sbjct: 176 RGFKDQIYDVYRYLPPELQVVLISATLPNEILEITSKFMTD------------PVK---I 220

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K      +K  W    + +  ++          N +  V+   +    
Sbjct: 221 LVKRDELTLEGIKQFFVAVEKEEWKFETLTDLYDTLTITQAVIFCNTKRKVDWLTAKMVE 280

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           F  +++ +HG M   +++++M +F++G  ++LI T V   G+DV  A
Sbjct: 281 FNFTVSSMHGDMPQKERDAIMSNFRSGETRVLITTDVWARGLDVQQA 327


>gi|197334932|ref|YP_002155940.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197316422|gb|ACH65869.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 431

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 126/317 (39%), Gaps = 47/317 (14%)

Query: 297 ILQGDVGSGKTLV--------ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           +     G+GKT           L +  +A     +A+I+AP   LA+Q    I  YT+ T
Sbjct: 42  LANAQTGTGKTAAFALPVIQQLLDSKKSATRRTARALILAPTRELAEQIAVNIADYTKYT 101

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQ 403
            + V  + G    + + +ALE        I++ T    Q+ I+        L  ++ DE 
Sbjct: 102 SLTVTSVFGGKKMSSQERALE----PGVDILVATPGRLQEHIEEENVSIANLEFLVFDEA 157

Query: 404 HR-----FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            R     F    R  + +  T+P ++L +AT   +   L S    DI         RKP 
Sbjct: 158 DRMLDMGFVNAIRNIMMEVNTSPQIMLFSATSSAQMNKLAS----DIL--------RKPK 205

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV------ERFNSLHE 512
           +  + P N     I  +   + E +K   +   I  K   N++ V+      E  N + +
Sbjct: 206 RISVDPENTTASTIAHVVYPVDEERKTELLSELIGRK---NWQQVLVFVNYKETANEIVK 262

Query: 513 HFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                     + HG  +   +   ++ FK G  ++++AT V   G+D+ D   +I  +  
Sbjct: 263 ELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATDVAARGLDIADLPHVINYDMP 322

Query: 570 HFGLAQLHQLRGRVGRG 586
                 +H++ GR GR 
Sbjct: 323 FLAEDYVHRI-GRTGRA 338


>gi|67969935|dbj|BAE01315.1| unnamed protein product [Macaca fascicularis]
          Length = 509

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 35  TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKST 94

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 95  CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 150

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  +  ++G +++S      A
Sbjct: 151 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------A 204

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + +++I  ++ ++SE           +E K   F     R + L 
Sbjct: 205 NHNILQIVDVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELT 253

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 254 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 313

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 314 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 356


>gi|73952801|ref|XP_850174.1| PREDICTED: similar to nucleolar protein GU2 isoform 2 [Canis
           familiaris]
          Length = 738

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 179 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 238

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     +  I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 239 LSVAC-FYGGTSYQSQ----INHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 292

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 293 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 347

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 348 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 401

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 402 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 457

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 458 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 495


>gi|27366679|ref|NP_762206.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|37676391|ref|NP_936787.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|320158571|ref|YP_004190949.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|27358245|gb|AAO07196.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|37200933|dbj|BAC96757.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|319933883|gb|ADV88746.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 418

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 151/346 (43%), Gaps = 46/346 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGGQ-- 323
           +PT  Q+ AI  +LQ          +     G+GKT      L+ +++  +  E   +  
Sbjct: 25  TPTPIQQQAIPHLLQGRDV------LAAAQTGTGKTAAYGLPLIQMLSRQSREETAPKHP 78

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+AP   LAQQ ++ +K+Y Q+T++ +  + G       R   E++A G   I+I T
Sbjct: 79  RALILAPTRELAQQVFDNLKQYAQHTELAIVTVYGG---TSIRVQQEQLAKG-VDILIAT 134

Query: 383 HA-----LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLV 436
                  LF       +L ++++DE  R      L   Q+       +M   P  R TL+
Sbjct: 135 PGRLLDHLFTKKTSLNQLQMLVLDEADRMLDMGFLPDIQR-------IMKRMPEERQTLL 187

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++  +  +  +  +   ++P++  +   N   + ++++   + + +K+  +   I  + 
Sbjct: 188 FSATFETRVKALAYRLM-KEPVEVQVAAANSTADTVKQMVYPVDKKRKSELLAYLIGSR- 245

Query: 497 ESNFRSVV--ERFNSLHEHFTSSI-------AIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             N++ V+   +     +   S +       A I+G  S   ++  +D FK+G  + LIA
Sbjct: 246 --NWQQVLVFTKTKQGSDALVSELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIA 303

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           T V   G+D+     ++  +  +     +H++ GR GR  +    +
Sbjct: 304 TDVAARGLDIAQLEQVVNFDMPYKAEDYVHRI-GRTGRAGQTGLAV 348


>gi|170736688|ref|YP_001777948.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169818876|gb|ACA93458.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 465

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 138/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+I+ P   LA Q  + +++  +  + + V
Sbjct: 48  IAQAKTGSGKTAAFSLALLARLDARSFDVQAMILCPTRELADQVAQEVRRLARAEENVKV 107

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHI++GT     D +    L L     +++DE  R  
Sbjct: 108 LTLCGGTPMRPQAQSLE---HG-AHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRM- 162

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               L +        V  M  T   +TL+ ++     I+K++++   R P K + +    
Sbjct: 163 ----LDMGFFDDIAKVARMCPT-TRQTLLFSATYPDGIAKLSQQFL-RNP-KEIKLAERH 215

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 216 DDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 275

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 276 -HGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI- 333

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 334 GRTGRADQ 341


>gi|106364397|dbj|BAE95223.1| ATP-dependent RNA helicase [unclutured Candidatus Nitrosocaldus
           sp.]
          Length = 589

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 12/108 (11%)

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G GKT +AL+ +A  ++ GG+A+ +AP  +L  QHY F+K++  +  I V  +TGN P+ 
Sbjct: 67  GLGKTTIALLLIADTLKHGGRALFLAPTRVLVHQHYNFLKEHILHDGIAV--LTGNTPRH 124

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR 405
            R +         A ++  T  +  + I+          L++ DE HR
Sbjct: 125 ERIEVWN-----SASVVCSTPQVTLNDIERGLIDAGDFALLVFDEAHR 167


>gi|148230348|ref|NP_001079703.1| similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA
           helicase, 68kDa) [Xenopus laevis]
 gi|28838521|gb|AAH47981.1| MGC53795 protein [Xenopus laevis]
          Length = 607

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 136 TGSGKTLSYLLPGIVHINHQPFLQRGDGPILLVLAPTRELAQQVQQVAAEYGRACRLRTT 195

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 196 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLD 251

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  V  ++G +++S      A
Sbjct: 252 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELS------A 305

Query: 454 GRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +  +  + D+++  ++ ++SE           +E K   F     R + L 
Sbjct: 306 NHNILQIVDVCNDGEKDDKLVRLMEEIMSE-----------KENKTIVFVETKRRCDDLT 354

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 355 RRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIATDVASRGLDVEDVKFVINYDY 414

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 415 PNSSEDYIHRI-GRTARSSKTGTAYTFFTPGNIKQVNDLVSVLR 457


>gi|310789728|gb|EFQ25261.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 551

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 141/340 (41%), Gaps = 45/340 (13%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +I+AP   LA Q  + I K+ ++++I  
Sbjct: 173 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRN 232

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G +P+  + + L R       + I T     D ++  K  L     +++DE  R  
Sbjct: 233 TCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRML 288

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
              F  Q R  + Q       L+ +AT       L S    D  ++         I ++ 
Sbjct: 289 DMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRALASDFLTDFIQVN--------IGSLE 340

Query: 463 IPIN-RIDEVIERLKVVLSEGKKAYWICPQIE---EKKESNF------RSVVERFNSLHE 512
           +  N RI +V+E    V++E +K   +   +E   + KE+        + V +       
Sbjct: 341 LAANHRITQVVE----VVNESEKRDRMIKHLEKMMDNKENKVLIFVGTKRVADEITRFLR 396

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                   IHG     +++ V+D FK G   +++AT V   GIDV + + ++  +  +  
Sbjct: 397 QDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNS 456

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +H++ GR GR   + + +  +    SK +   ++VL+
Sbjct: 457 EDYIHRI-GRTGRAGAMGTAVTFFTTDNSKQARDLVNVLR 495


>gi|289619555|emb|CBI53838.1| unnamed protein product [Sordaria macrospora]
          Length = 626

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 142/356 (39%), Gaps = 70/356 (19%)

Query: 297 ILQGDVGSGKTLVALIAM---------AAAVEAGGQ--------AVIMAPIGILAQQHYE 339
           + Q   G+GKTL  L+ +         A A   GG+        A++++P   LA+Q  E
Sbjct: 116 VAQAKTGTGKTLGFLVPVIQKIVAQDPALADRFGGRRARSDDIRAIVISPTRELAEQIGE 175

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQY 392
             +K  + T +IV+   G      +R+ L +      HI++GT     D        I  
Sbjct: 176 EARKLVKGTGVIVQTAVGG---TQKREMLYKTRQQGCHILVGTPGRLNDLLSDSTSGIDA 232

Query: 393 YKLILVIVDEQHRF---GVQQRLK-----LTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
            +L  +++DE  R    G  + L+     L  +   P   L+ +  IP+ +V  +   ID
Sbjct: 233 PRLQTLVLDEADRMLEVGFDEELRQIINYLPDRKVLPRQTLLFSATIPKDVVGLARSYID 292

Query: 445 ISKI-------TEKPAGRKPIKTVIIPINRIDEV----IERLKVVLSEGK--------KA 485
            +          ++      I   I+P    + +    +E ++  ++E +        KA
Sbjct: 293 KNNFEFVQTVKADEVLTHDRIPQYIVPCKGFENIYPTMLELVEKAINESRTNPDALPFKA 352

Query: 486 YWICPQIEEKKESN--FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               P   E   +N  FR +  +F  + + +      IH +++   +    D FK  T  
Sbjct: 353 IVFLPTTAEVIMANAIFRRLQWKFRHIPKTWD-----IHSKLTQNARTRAADEFKRATTG 407

Query: 544 LLIATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +L ++ V   G+D  + S +I      N E +    +H+L GR GR  +     L+
Sbjct: 408 ILFSSDVTARGMDFPNVSHVIQLHTPPNREQY----IHRL-GRTGRANKSGQGWLI 458


>gi|147672130|ref|YP_001215089.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395]
 gi|146314513|gb|ABQ19053.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
 gi|227015635|gb|ACP11844.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
          Length = 428

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 119/278 (42%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E + +      +    + G
Sbjct: 66  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCG 125

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +  ++ AL        +I++ T      L Q  ++  ++  +++DE  R        
Sbjct: 126 GVDKTEQQNALAE----NPNILVATTGRLFDLTQSGLRLNRVTTLVLDEADR-------- 173

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 174 LLDMGFWPQVQALASQTAGVRQTVMCSATFSDDLKLKTQQLMRVPTQVSANPENSINQAV 233

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +      +HG  S
Sbjct: 234 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKS 293

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             ++E+ +  FKNG+ ++LIAT ++  GI +    ++I
Sbjct: 294 QSEREAALAEFKNGSTQVLIATDLLARGIHIEQLPVVI 331


>gi|152998122|ref|YP_001342957.1| primosomal protein N' [Marinomonas sp. MWYL1]
 gi|150839046|gb|ABR73022.1| primosomal protein N' [Marinomonas sp. MWYL1]
          Length = 743

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 80/176 (45%), Gaps = 23/176 (13%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +P +    Q  A + +L    Q N  + +L G  GSGKT V L  M   +E G Q ++M
Sbjct: 206 QVPPTLNPEQMRATEHLLDYRHQFN--VALLDGVTGSGKTEVFLRVMERLIEEGKQILVM 263

Query: 328 AP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-AL 385
            P IG+  Q    F  ++  NT I+  ++  NM    R  A    A G A IIIGT  A 
Sbjct: 264 VPEIGLTPQTLKRFEIRF--NTDIV--LMHSNMSDRERLDAWLLAACGHAKIIIGTRSAA 319

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATP 430
           F   I    L ++++DE+H    +Q            +K  Q    P VLL +ATP
Sbjct: 320 F---IPAPNLGMIVIDEEHDTSYKQHEGFRYHARDLAIKRAQALNIP-VLLASATP 371


>gi|115384944|ref|XP_001209019.1| eukaryotic initiation factor 4A [Aspergillus terreus NIH2624]
 gi|114196711|gb|EAU38411.1| eukaryotic initiation factor 4A [Aspergillus terreus NIH2624]
          Length = 419

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 167/382 (43%), Gaps = 75/382 (19%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF----SPTK 275
           WTS  + RL +  LLA    + ++   ++       ++E K   ++LR +       P+ 
Sbjct: 15  WTSSLKSRL-FGRLLAPSWWVGMIESNYEDVTDSFDSMELK--AELLRGVYAYGFERPSA 71

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGI 332
            Q+ AI  I++     N +  I Q   G+GKT    I+    ++      QA+I+AP   
Sbjct: 72  IQQRAIMPIIK----GNDV--IAQAQSGTGKTATFSISALQKIDPNLKACQALIVAPTRE 125

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LAQQ  + +        I      G        KAL+        I++GT    QD IQ 
Sbjct: 126 LAQQIQKVVVAIGDFMNINCHACIGGTAIRDDMKALQE----GPPIVVGTPGRIQDMIQR 181

Query: 393 Y-----KLILVIVDEQHRF---GVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSL 440
                 ++ L I+DE       G  +++    +L  +AT   V+L++AT +P+       
Sbjct: 182 RVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQAT--QVVLLSAT-MPQ------- 231

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
              D+ ++T K   R P++ ++          ++ ++ L EG K ++I  + EE K    
Sbjct: 232 ---DVLEVTTKFM-RDPVRILV----------KKQELTL-EGIKQFYIAVEKEEWKLDTL 276

Query: 501 RSVVE---------------RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTC 542
             + E               + + L +  T+   +++ +HG M    ++ +M  F++G+ 
Sbjct: 277 SDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDIIMKEFRSGSS 336

Query: 543 KLLIATTVIEVGIDVVDASIII 564
           ++LIAT ++  GIDV   S++I
Sbjct: 337 RVLIATDLLARGIDVQQVSLVI 358


>gi|89893464|ref|YP_516951.1| hypothetical protein DSY0718 [Desulfitobacterium hafniense Y51]
 gi|89332912|dbj|BAE82507.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1631

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 145/333 (43%), Gaps = 60/333 (18%)

Query: 302 VGSGKTLVALI-AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GN 358
            G GK++   I A+ +   A G  V+++P+  L +   + +++       I E +T  G 
Sbjct: 316 TGGGKSITFQIPALISGAAAKGLTVVISPLQSLMKDQVDNLERAG-----ITEAVTINGL 370

Query: 359 MPQAHRRKALERIAHGQAHII-IGTHALFQDSIQYYKL----ILVIVDEQHRFG------ 407
           +    R K+ ER+ +G A ++ I   +L   +I+   L    +  ++DE H F       
Sbjct: 371 LDPIERAKSYERVENGSASLLYISPESLRSKTIESLLLNRNVVRFVIDEAHCFSAWGQDF 430

Query: 408 -------------VQQRLKLTQKATAPHVLLMTATPIPRTL-----VLTSLGDIDISKIT 449
                        +Q++  L++      V   TAT  P+ +           D+D+ ++ 
Sbjct: 431 RVDYLYIGEFIRSLQEKKNLSEGIP---VSCFTATAKPKVIEDIRGYFKEKLDLDL-ELF 486

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE-KKESNFRSVVERFN 508
              A R  ++  +   +  DE    L+ +L EGK     CP I    +     ++ +R N
Sbjct: 487 SANASRVNLRYEVFAKSE-DEKYNALRDLL-EGKP----CPTIVYVTRTHTAENLAQRLN 540

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII---I 565
              + + +     HG+M   +K +  D+F  G  ++++AT+   +G+D  D  ++I   I
Sbjct: 541 --QDGYQA--GAYHGKMDKQEKSTNQDAFIQGQVRIMVATSAFGMGVDKKDVGMVIHYEI 596

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISS-CILLYH 597
            N+    L    Q  GR GR E +S+ C +L++
Sbjct: 597 SNS----LENYIQEAGRAGRDETLSADCYVLFN 625


>gi|321261964|ref|XP_003195701.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
 gi|317462175|gb|ADV23914.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
          Length = 549

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 156/372 (41%), Gaps = 66/372 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+K QE A+  +L   S   R L I Q   G+GKT    + M + V+      QA+ +AP
Sbjct: 174 PSKIQEKALPLLL---SNPPRNL-IGQSQSGTGKTAAFTLNMLSRVDPTIPTPQAICIAP 229

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E I +  Q TQ+   +    +P +  R A  RI      I+IGT     D 
Sbjct: 230 SRELARQIQEVIDQIGQFTQVGTFLA---VPGSWSRNA--RI---DKQILIGTPGTLVDM 281

Query: 390 IQYYKLIL-------VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           +     IL       +++DE      QQ L   Q      +L     P  + ++ ++  +
Sbjct: 282 LMRGSRILDPRMIRVLVLDEADELIAQQGLG-EQTFRIKQLL----PPNIQNVLFSATFN 336

Query: 443 IDISKITEK--PAGRK-----------PIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            D+ +  ++  P   K            I+ + +  +  D+  E L         A + C
Sbjct: 337 DDVQEFADRFAPEANKIFLRKEDITVDAIRQLYLECDSEDQKYEALS--------ALYDC 388

Query: 490 PQIEE-----KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             I +     K+++    + ER  S   H   ++A +HG     ++++++D F+NG  K+
Sbjct: 389 LVIGQSIVFCKRKATADHIAERLIS-EGH---AVASLHGDKFSQERDAILDGFRNGETKV 444

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQ--------LHQLRGRVGRGEEISSCILLY 596
           LI T VI  GID+   ++++  +    G           +H++ GR GR       ++  
Sbjct: 445 LITTNVIARGIDIPAVNMVVNYDVPDLGPGGSGPDIETYIHRI-GRTGRFGRKGCSVVFT 503

Query: 597 HPPLSKNSYTRL 608
           H   SK+   R+
Sbjct: 504 HDYRSKSDVERI 515


>gi|167041390|gb|ABZ06143.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
           HF4000_005K23]
          Length = 427

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 144/338 (42%), Gaps = 52/338 (15%)

Query: 302 VGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE--IITG 357
            G+GKTL   IA    +  + G  A+I+ P   LA Q  + +    +NT  I    +I G
Sbjct: 48  TGTGKTLCYGIACINKLLNDRGSNALIICPTRELAVQVGDVLNGLIENTMNIKSAVLIGG 107

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF------ 406
              Q   R+  +R       +IIGT     D     S++ ++   +++DE  R       
Sbjct: 108 ESMQKQLRQLQKR-----PRLIIGTPGRLNDHLKRKSLKLHQSYFLVLDETDRMLDMGFI 162

Query: 407 -GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG---RKPIKTVI 462
             V+Q LK   K    H  L+ +  +P+          +I KITE+      R  + +  
Sbjct: 163 PQVEQILKFVPKK---HQTLLFSATLPQ----------NILKITERYLNDPIRIRVGSTT 209

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTS 516
            PI++I + +    + +SEG K   +  ++ ++K S        R+  +  + LH+    
Sbjct: 210 TPISKIKQEV----IQVSEGDKYNKLQEELYKRKGSILLFVKTKRNADKMADRLHDD-GH 264

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               +HG +    ++  + +F++G  ++LI+T +   G+DV     +I  +        +
Sbjct: 265 RCDCMHGNLRQSKRQRTLIAFRSGKIRILISTELASRGLDVPSIQHVINYHLPQVPEDFI 324

Query: 577 HQLRGRVGR-GEEISSCILLYHPPLSKNSYTRLSVLKN 613
           H++ GR  R G E   C L +  P  +  +  +  L N
Sbjct: 325 HRI-GRTARAGAE--GCALTFITPNDRQMWNGIQRLIN 359


>gi|153004208|ref|YP_001378533.1| helicase domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152027781|gb|ABS25549.1| helicase domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 921

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 16/151 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAA-AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           +L  +VG GKT+ A I +A  A E  G+AVI+ P  + AQ   E   K+     +  E++
Sbjct: 73  VLADEVGLGKTVEAGIVLAQLAAEGKGRAVILVPASLRAQWREELRSKFG----LEAEVV 128

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH---ALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            G+  +   R+ L         I+I +H   AL Q  I+     + ++DE HR     R 
Sbjct: 129 DGDSVREKERQGLRTNPFDTGGIVICSHPFAALRQADIERVPWDVAVIDEAHRLRNAYRK 188

Query: 413 -----KLTQKA--TAPHVLLMTATPIPRTLV 436
                +  +KA   AP  LL+TATP+   L+
Sbjct: 189 DHRTGQALRKALRKAPK-LLLTATPLQNDLM 218


>gi|78186810|ref|YP_374853.1| primosomal protein n [Chlorobium luteolum DSM 273]
 gi|78166712|gb|ABB23810.1| Primosomal protein n [Chlorobium luteolum DSM 273]
          Length = 810

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 101/237 (42%), Gaps = 22/237 (9%)

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH--NPRKAKDFEWTSPARERLAYDEL 233
           V A  R PVLP   E++L   K+ P   E F  +    P  A   E T+ +R R+     
Sbjct: 190 VPAWRRAPVLPGEAEEEL---KNTPKQLETFRRVSAFGPGGA-SLEATAASR-RILNTLT 244

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +G +  + +  + + + G+P   E           P  PT  QE+ + ++     +   
Sbjct: 245 ASGYLEKIAVAVEGRFDTGMPTEQEE----------PKQPTAQQEAVLGELRSASRKGGY 294

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
              +L G  GSGKTLV +  +   ++ G  A+++ P   L  Q     +++  +T   V 
Sbjct: 295 KTFLLHGVTGSGKTLVYIEFLKEVLKEGRTAIVLVPEIALTPQTAGRFRQHFGDT---VA 351

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
           I+   M    +  A  R+  G+A I +G  +     +    L  VIVDE+H    +Q
Sbjct: 352 IMHSAMSNQEKYDAWHRLRSGRATIALGARSTIFAPLS--NLGAVIVDEEHDGAYKQ 406


>gi|68069123|ref|XP_676472.1| RNA helicase-1 [Plasmodium berghei strain ANKA]
 gi|56496186|emb|CAH99280.1| RNA helicase-1, putative [Plasmodium berghei]
          Length = 393

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 146/350 (41%), Gaps = 50/350 (14%)

Query: 261 IAQKILRNIPFS-----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           + +K+LR I +S     P+  Q+  IK IL+          I Q   G+GKT   +I+  
Sbjct: 30  LNEKLLRGI-YSYGFEKPSAIQQRGIKPILKGYDT------IGQAQSGTGKTATFVISSL 82

Query: 316 AAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
             +       QA+I+AP   LAQQ  + +       ++      G       R+ ++++ 
Sbjct: 83  QLINYDYVACQALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVV---REDIDKLK 139

Query: 373 HGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF---GVQQRLKLTQKATAP--H 422
            G  H+++GT     D I        +L L I+DE       G + ++    K   P   
Sbjct: 140 QG-VHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQ 198

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKVVLSE 481
           V L +AT     L LT+       +    P      KT+++  + +  E I+    V  E
Sbjct: 199 VALFSATMPQEILELTT-------RFMRDP------KTILVKKDELTLEGIQFYVAVEKE 245

Query: 482 GKKAYWICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             K   +C   E           N R  V+       +   +++ +HG M   D++ +M 
Sbjct: 246 EWKLDTLCDLYETLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMR 305

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            F++G+ ++L+ T ++  GIDV   S++I  +        +H++ GR GR
Sbjct: 306 EFRSGSTRVLVTTDLLARGIDVQQVSLVINYDLPCSPDTYIHRI-GRSGR 354


>gi|328849915|gb|EGF99087.1| hypothetical protein MELLADRAFT_50777 [Melampsora larici-populina
           98AG31]
          Length = 395

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 130/314 (41%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++  +++      QA++++P   LA Q    I        I   
Sbjct: 63  IAQAQSGTGKTATFSISILQSIDTQIRETQALVLSPTRELATQIQSVILALGDYMNIQCH 122

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        + + ++ HGQ H++ GT     D I+   L        +L   DE   
Sbjct: 123 ACIGGTSIG---EDIRKLDHGQ-HVVSGTPGRVYDMIRRRNLRTRNIKMLVLDEADELLN 178

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G + ++    +   P           + +VL++    D+ ++T K     PI+   I +
Sbjct: 179 LGFKDQIYDVYRYLPPQT---------QVVVLSATLPYDVLEMTTKFM-TDPIR---ILV 225

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEHFT 515
            R +  +E +K      +K  W    + +  ++          N R  V+          
Sbjct: 226 KRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMREAN 285

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHF 571
            +++ +HG M   +++++M  F+NGT ++LI T V   GIDV   S++I      N E++
Sbjct: 286 FTVSSMHGDMPQKERDTIMGEFRNGTSRVLITTDVWARGIDVQQVSLVINYDLPSNRENY 345

Query: 572 GLAQLHQLRGRVGR 585
               +H++ GR GR
Sbjct: 346 ----IHRI-GRSGR 354


>gi|154288372|ref|XP_001544981.1| hypothetical protein HCAG_02028 [Ajellomyces capsulatus NAm1]
 gi|160380612|sp|A6QXC1|DBP3_AJECN RecName: Full=ATP-dependent RNA helicase DBP3
 gi|150408622|gb|EDN04163.1| hypothetical protein HCAG_02028 [Ajellomyces capsulatus NAm1]
          Length = 487

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 147/334 (44%), Gaps = 58/334 (17%)

Query: 300 GDVGSGKTL---VALIAMAAAVEAGGQ-----AVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   V  I     + A        AVI+ P   LA Q ++ + K+T N  + 
Sbjct: 114 AETGSGKTLAFGVPCIRKVLEINASHSSFRISAVIITPTRELAMQIHDQLVKFTPNG-VG 172

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
           +  I G   +  +R+AL++     A +I+ T    +D     S+   K+  +++DE  R 
Sbjct: 173 LACIYGGASKDDQRRALKK-----ASVIVATPGRLKDFHSDESLNLKKVKYLVLDEADRM 227

Query: 407 ---GVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKT 460
              G +Q +K           +++A P  R   T++ T+   I + K+      ++P+  
Sbjct: 228 LDKGFEQDIKD----------IVSAMPSSRKRQTVMFTATWPISVRKLATTFM-KEPVTV 276

Query: 461 VI-------IPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF----- 507
            I       I  N RI +++E   VV  E K++  +    + ++  N    V  F     
Sbjct: 277 TIGGDLSSDIRANTRIKQIVE---VVKPENKESRLLSLLNQYQRGRNAMDKVLVFCLYKK 333

Query: 508 -NSLHEHFTSS----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             +  E F  S    +A IHG M+  ++ + +D+FK+G+  +L+AT V   G+D+    +
Sbjct: 334 EATRIERFIRSKGFKVAGIHGDMNQTERFNSLDAFKSGSVPVLVATDVAARGLDIPAVKL 393

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           ++           +H++ GR GR       I ++
Sbjct: 394 VLNVTFPLTVEDYVHRI-GRTGRAGSDGLAITMF 426


>gi|52079209|ref|YP_078000.1| putative ATP binding helicase [Bacillus licheniformis ATCC 14580]
 gi|52784575|ref|YP_090404.1| YfmL [Bacillus licheniformis ATCC 14580]
 gi|319647011|ref|ZP_08001237.1| YfmL protein [Bacillus sp. BT1B_CT2]
 gi|52002420|gb|AAU22362.1| putative ATP binding helicase [Bacillus licheniformis ATCC 14580]
 gi|52347077|gb|AAU39711.1| YfmL [Bacillus licheniformis ATCC 14580]
 gi|317390835|gb|EFV71636.1| YfmL protein [Bacillus sp. BT1B_CT2]
          Length = 376

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 139/344 (40%), Gaps = 42/344 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  Q++A+  IL           I +   G+GKTL  ++ +   +EA     QAVI+A
Sbjct: 26  DPTNVQKNAVDLILDGRDV------IAESPTGTGKTLAYVLPILEKLEADQKNVQAVILA 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L  Q ++ I ++ + + I    + G    A+ +K  E++     HII GT     +
Sbjct: 80  PSRELVMQIFDVIVEWKKGSDIRAASLIGG---ANIKKQQEKLKK-HPHIIAGTPGRVFE 135

Query: 389 SIQYYKLIL-----VIVDE-------QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I+  KL +     +++DE       +HR  +Q  +K T +         T        +
Sbjct: 136 LIKMKKLKMHEVKTIVLDETDHLLTPEHRGTIQSIIKSTLRDRQLLCFSATLKDDAEREL 195

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                D ++ KI         +K   +  ++ D+V    K     G +A      I    
Sbjct: 196 REMTKDAEVLKIKRSKEESAKVKHQFLVCDQRDKVKILQKFSRLPGMQALVFVKDI---- 251

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N     E+    H      I ++H     I++  ++ +F+ G   LL+AT +   GID
Sbjct: 252 -GNLNVYAEKLKFHH----VEIGVLHSEAKKIERAKILQAFEAGEFTLLLATDIAARGID 306

Query: 557 VVDASIII---IENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + D   +I   + N E +    +H+  GR GR     + I L +
Sbjct: 307 IEDLPYVIHADLPNVEGY----IHR-SGRTGRAGNEGTVISLVN 345


>gi|24375608|ref|NP_719651.1| primosomal protein N' [Shewanella oneidensis MR-1]
 gi|24350505|gb|AAN57095.1|AE015843_7 primosomal protein N' [Shewanella oneidensis MR-1]
          Length = 737

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 22/215 (10%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L   P    K Q  A+  + Q   Q+     +L+G  GSGKT V L  +   ++ G QA+
Sbjct: 201 LDETPHRLNKEQAVAVTVLTQ---QQGYHCTLLEGITGSGKTEVYLALLEHILKQGKQAL 257

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           I+ P IG+  Q    F +++  N  ++   +T N     R +A  +   GQA IIIGT +
Sbjct: 258 ILVPEIGLTPQTINRFKRRFRVNVAVLHSGLTDN----QRLEAWRQARCGQAAIIIGTRS 313

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-----------TAPHVLLMTATPIPR 433
                + +  +I  I+DE+H    +Q+  +   A           + P V+L +ATP   
Sbjct: 314 ALFTPMAFPGVI--ILDEEHDSSFKQQEGVGYHARDLAVMRGHLESIP-VVLGSATPSLE 370

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           +L     G     ++ E+    K ++  II I  +
Sbjct: 371 SLQNALSGRYHHLQLGERAGNAKKVRQGIIDIKNL 405


>gi|45361303|ref|NP_989229.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
 gi|38969901|gb|AAH63223.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
 gi|89271852|emb|CAJ81861.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
          Length = 609

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 134/344 (38%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 138 TGSGKTLSYLLPGIVHINHQPFLQRGDGPILLVLAPTRELAQQVQQVAAEYGRACRLRST 197

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 198 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLD 253

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    R  V  ++G +++S      A
Sbjct: 254 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYVHINIGALELS------A 307

Query: 454 GRKPIKTV-IIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +      DE + RL + ++SE           +E K   F     R + L 
Sbjct: 308 NHNILQIVDVCNDGEKDEKLVRLMEEIMSE-----------KENKTIVFVETKRRCDDLT 356

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 357 RRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIATDVASRGLDVEDVKFVINYDY 416

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 417 PNSSEDYIHRI-GRTARSSKTGTAYTFFTPGNIKQVNDLISVLR 459


>gi|107027331|ref|YP_624842.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054]
 gi|105896705|gb|ABF79869.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054]
          Length = 465

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 138/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+I+ P   LA Q  + +++  +  + + V
Sbjct: 48  IAQAKTGSGKTAAFSLALLARLDARSFDVQAMILCPTRELADQVAQEVRRLARAEENVKV 107

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHI++GT     D +    L L     +++DE  R  
Sbjct: 108 LTLCGGTPMRPQAQSLE---HG-AHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRM- 162

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               L +        V  M  T   +TL+ ++     I+K++++   R P K + +    
Sbjct: 163 ----LDMGFFDDIAKVARMCPT-TRQTLLFSATYPDGIAKLSQQFL-RNP-KEIKLAERH 215

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 216 DDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 275

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 276 -HGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI- 333

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 334 GRTGRADQ 341


>gi|187935259|ref|YP_001885538.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723412|gb|ACD24633.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 480

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 145/341 (42%), Gaps = 41/341 (12%)

Query: 264 KILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---E 319
           K + N+ + +P++ QE AI +IL     +N+ L +++   GSGKT    I +   +   E
Sbjct: 16  KAIDNLGYKTPSEVQEKAIPEIL-----RNKDL-VVKSQTGSGKTASFGIPLCEKIDWDE 69

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q +++AP   LA Q  E I    +  +I    I G      + + L++    + HI+
Sbjct: 70  NKPQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ----KTHIV 125

Query: 380 IGTHALFQDSIQYYKL--------ILVIVDEQHRFG-VQQRLKLTQKATAPHVLLMTATP 430
           +GT     D I    L        ++   DE    G ++Q   + ++     V L+ +  
Sbjct: 126 VGTPGRVLDHIDRGSLDVSKTNYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTLLFSAT 185

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IP           +I  + +K   R PI   I   N   + +      +   +K   +  
Sbjct: 186 IPE----------EIKNLCDKHMNR-PIDIAIKSQNLTSDNVSHYAYHVGYNQKLDLLNN 234

Query: 491 -QIEEKKESN--FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             I E  E++  F    E  +++HE+      S   IHG M   D+   M+ F+ G  ++
Sbjct: 235 ILISEMPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRI 294

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           L+AT +   GID+   + +I  +      A +H++ GR GR
Sbjct: 295 LVATDIASRGIDIEGITHVINYDIPVEKEAYVHRI-GRTGR 334


>gi|171915799|ref|ZP_02931269.1| recQ [Verrucomicrobium spinosum DSM 4136]
          Length = 725

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 30/228 (13%)

Query: 385 LFQDSIQYYKLILVIVDEQH---RFGVQQR---LKLTQ---KATAPHVLLMTATPIP--R 433
           +F +++Q   + L  VDE H   ++G   R   ++L +   K   P VL +TAT     R
Sbjct: 130 MFINALQDVNIALFAVDEAHCLSQWGHDFRPDYIRLGEALEKLGRPQVLALTATATAEVR 189

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T +L +L   D   ++ +   R  +   I P  +     +RL+ ++S  +     C    
Sbjct: 190 TDILNTLKLRD-PYLSVRGFSRPNLSLHITPTEKAKHKYDRLRDIVSHWQTGIIYCAT-- 246

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R  VE   SL + +       HG M D ++E   + F      + +AT    +
Sbjct: 247 -------RKKVEEVASLLDEWRIRAIAYHGGMDDKEREHAQNRFLQRDVAVAVATNAFGM 299

Query: 554 GIDVVDASIIIIENAEHF----GLAQLHQLRGRVGRGEEISSCILLYH 597
           GID  D   ++     HF     +   +Q  GR GR  E S C L ++
Sbjct: 300 GIDRSDVRFVV-----HFEVPGSVEAYYQEAGRAGRDGEPSHCELFFN 342


>gi|300811688|ref|ZP_07092163.1| primosomal protein N' [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497315|gb|EFK32362.1| primosomal protein N' [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 793

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P      Q +A+  + QD+  +     +L+G  GSGKT V L A++ A+  G  A+++ P
Sbjct: 254 PLDLNDEQAAALSRVSQDIKGRVSQTFLLEGVTGSGKTEVYLQAISQALALGRAALMLVP 313

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            I +  Q   +   ++ Q     V ++   + +  R     RI  GQA +++G  +    
Sbjct: 314 EISLTPQMVKQVQARFGQQ----VAVLHSALSEGERYDEWRRIRRGQAQVVVGARSAVFA 369

Query: 389 SIQYYKLILVIVDEQHRFGVQQ 410
            +    L L+I+DE+H    +Q
Sbjct: 370 PLD--NLGLIIIDEEHEGSYKQ 389


>gi|268573672|ref|XP_002641813.1| C. briggsae CBR-INF-1 protein [Caenorhabditis briggsae]
 gi|187026294|emb|CAP34430.1| CBR-INF-1 protein [Caenorhabditis briggsae AF16]
          Length = 402

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 140/328 (42%), Gaps = 75/328 (22%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQI-IV 352
           I Q   G+GKT    +++   ++      QA++MAP   LAQQ  + +    +   + I+
Sbjct: 70  IAQAQSGTGKTATFSVSILQRIDHSDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNIL 129

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQH 404
             I G   +  +RK    I     H+++GT     D I    L        +L   DE  
Sbjct: 130 PCIGGTSVRDDQRKLENGI-----HVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEML 184

Query: 405 RFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
             G + ++    ++      V+L++AT     L            +T++   R PI+ ++
Sbjct: 185 SRGFKDQIYDVFRSMPQDVQVVLLSATMPAEVL-----------DVTDRFM-RNPIRILV 232

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN-------------- 508
               + DE+         EG + ++I  Q   K E  F  + + +N              
Sbjct: 233 ----KKDELT-------LEGIRQFYINVQ---KDEWKFDCLCDLYNVVNVTQAVIFCNTR 278

Query: 509 ----SLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
                L E  TS   +++ +HG M   +++++M  F++G+ ++LI T ++  GIDV   S
Sbjct: 279 RKVDQLTEQMTSKQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVS 338

Query: 562 IIII----ENAEHFGLAQLHQLRGRVGR 585
           ++I      N E++    +H++ GR GR
Sbjct: 339 LVINYDLPSNRENY----IHRI-GRSGR 361


>gi|82540694|ref|XP_724645.1| RNA helicase-1 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479359|gb|EAA16210.1| RNA helicase-1 [Plasmodium yoelii yoelii]
          Length = 443

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 146/352 (41%), Gaps = 53/352 (15%)

Query: 261 IAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           + +K+LR I       P+  Q+  IK IL+          I Q   G+GKT   +I+   
Sbjct: 30  LNEKLLRGIYSYGFEKPSAIQQRGIKPILKGYDT------IGQAQSGTGKTATFVISSLQ 83

Query: 317 AVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
            +       QA+I+AP   LAQQ  + +       ++      G       R+ ++++  
Sbjct: 84  LINYDYVACQALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVV---REDIDKLKQ 140

Query: 374 GQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF---GVQQRLKLTQKATAP--HV 423
           G  H+++GT     D I        +L L I+DE       G + ++    K   P   V
Sbjct: 141 G-VHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQV 199

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            L +AT     L LT+       +    P      KT+++  + +   +E ++      +
Sbjct: 200 ALFSATMPQEILELTT-------RFMRDP------KTILVKKDEL--TLEGIRQFYVAVE 244

Query: 484 KAYWICPQIEEKKES----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           K  W    + +  E+          N R  V+       +   +++ +HG M   D++ +
Sbjct: 245 KEEWKLDTLCDLYETLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLI 304

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           M  F++G+ ++L+ T ++  GIDV   S++I  +        +H++ GR GR
Sbjct: 305 MREFRSGSTRVLVTTDLLARGIDVQQVSLVINYDLPCSPDTYIHRI-GRSGR 355


>gi|212546709|ref|XP_002153508.1| eukaryotic translation initiation factor 4, putative [Penicillium
           marneffei ATCC 18224]
 gi|210065028|gb|EEA19123.1| eukaryotic translation initiation factor 4, putative [Penicillium
           marneffei ATCC 18224]
          Length = 397

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 129/301 (42%), Gaps = 62/301 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    ++      QA+I+AP   LAQQ  + +        I   
Sbjct: 65  IAQAQSGTGKTATFSISALQKIDGSLKACQALILAPTRELAQQIQKVVVAIGDFMSIECH 124

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        KAL+        +++GT    QD IQ   L        +L   DE   
Sbjct: 125 ACIGGTNVREDMKALQ----DGPQVVVGTPGRVQDMIQRRVLRTDNIKMFVLDEADEMLS 180

Query: 406 FGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G  +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P++ +
Sbjct: 181 RGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPVRIL 226

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------R 506
           +    + DE+         EG K ++I  + EE K      + E               +
Sbjct: 227 V----KKDELT-------LEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 275

Query: 507 FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++
Sbjct: 276 VDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 335

Query: 564 I 564
           I
Sbjct: 336 I 336


>gi|194752113|ref|XP_001958367.1| GF10884 [Drosophila ananassae]
 gi|190625649|gb|EDV41173.1| GF10884 [Drosophila ananassae]
          Length = 822

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 133/324 (41%), Gaps = 47/324 (14%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  NT +   
Sbjct: 197 TGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNT 256

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
            I G  P+  + + LER       I+I T     D     +    +   +++DE  R   
Sbjct: 257 CIFGGAPKGQQARDLER----GVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLD 312

Query: 407 -GVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            G + ++ K+ Q+      +LM +   P+ +       L +   ++I  ++   A    +
Sbjct: 313 MGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLS-ANHNIL 371

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFT 515
           + V +     DE  + +K+V         +   I  + E+    F    +R + +  + +
Sbjct: 372 QIVDV----CDENEKLMKLVK--------LLTDISAENETKTIIFVETKKRVDEITRNIS 419

Query: 516 SS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                   IHG  S  +++ V+ SF+NG   +L+AT V   G+DV D   +I  +     
Sbjct: 420 RQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNS 479

Query: 573 LAQLHQLRGRVGRGEEISSCILLY 596
              +H++ GR GR     +   L+
Sbjct: 480 EDYVHRI-GRTGRSNNRGTAYTLF 502


>gi|73969117|ref|XP_860802.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 14 [Canis
           familiaris]
          Length = 614

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 134/345 (38%), Gaps = 57/345 (16%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +    Y + +++   
Sbjct: 138 TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKST 197

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 198 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLD 253

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KITE 450
            G +             R  L   AT P  +   A    R     ++G++++S    I +
Sbjct: 254 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQ 313

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
                  I  V +   +  ++I+ ++ +++E           +E K   F     R + L
Sbjct: 314 -------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVETKRRCDDL 355

Query: 511 HEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                        IHG  S  +++ V++ F++G   +LIAT V   G+DV D   +I  +
Sbjct: 356 TRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYD 415

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 416 YPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 459


>gi|221059063|ref|XP_002260177.1| RNA helicase [Plasmodium knowlesi strain H]
 gi|193810250|emb|CAQ41444.1| RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 398

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 148/353 (41%), Gaps = 55/353 (15%)

Query: 261 IAQKILRNIPFS-----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           + +K+LR I +S     P+  Q+  IK IL      N    I Q   G+GKT   +I+  
Sbjct: 30  LNEKLLRGI-YSYGFEKPSAIQQRGIKPIL------NGYDTIGQAQSGTGKTATFVISSL 82

Query: 316 AAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
             +       QA+I+AP   LAQQ  + +       ++      G       R+ ++++ 
Sbjct: 83  QLINYDVVACQALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVV---REDIDKLK 139

Query: 373 HGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF---GVQQRLKLTQKATAP--H 422
            G  H+++GT     D I        +L L I+DE       G + ++    K   P   
Sbjct: 140 QG-VHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQ 198

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           V L +AT     L LT+       +    P      KT+++  + +   +E ++      
Sbjct: 199 VALFSATMPQEILELTT-------RFMRDP------KTILVKKDEL--TLEGIRQFYVAV 243

Query: 483 KKAYWICPQIEEKKES----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           +K  W    + +  E+          N R  V+       +   +++ +HG M   D++ 
Sbjct: 244 EKEEWKLDTLCDLYETLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDL 303

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +M  F++G+ ++L+ T ++  GIDV   S++I  +        +H++ GR GR
Sbjct: 304 IMREFRSGSTRVLVTTDLLARGIDVQQVSLVINYDLPTSPDTYIHRI-GRSGR 355


>gi|83652036|gb|ABC36100.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
          Length = 562

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 137/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + +++  +  + + V
Sbjct: 146 IAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQVAQEVRRLARAEENVKV 205

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHII+GT     D +    L L     +++DE  R  
Sbjct: 206 LTLCGGTPMRPQTQSLE---HG-AHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRML 261

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K      +     P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 262 DMGFFDDIAK------VARLCPPTRQTLLFSATYPDGIAKLSQQFL-RNP-KEVKLEERH 313

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   ++  +        +  +   +  + LH     ++A+
Sbjct: 314 DDSKIRQRFYEVTEDERLHAVGLLLKHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 373

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 374 -HGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI- 431

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 432 GRTGRADQ 439


>gi|218508404|ref|ZP_03506282.1| ATP-dependent RNA helicase protein [Rhizobium etli Brasil 5]
          Length = 375

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 127/314 (40%), Gaps = 40/314 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  +  G +         A+++AP   LA Q    ++   + 
Sbjct: 41  LVSAQTGSGKTVAFGLALAPTLLEGSERFGNAGAPLALVIAPTRELALQVKRELEWLYEM 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399
           T  ++    G M     R+ALER     AHI++GT     D I+   L        +L  
Sbjct: 101 TGAVIASCVGGMDIRSERRALER----GAHIVVGTPGRLCDHIRRRALDMSDLKAAVLDE 156

Query: 400 VDEQHRFGVQQRLK-LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGRKP 457
            DE    G ++ L+ +   A      LM +  +P  +  L      D  +I+     ++ 
Sbjct: 157 ADEMLDLGFREDLEFILDSAPDERRTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQH 216

Query: 458 IKT-----VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           +       ++ P +R + +I  L+    E   A   C         + R+ V    +   
Sbjct: 217 VDIEYRALMVAPSDRENAIINVLRYY--EATNAIVFC---------STRAAVNHLTARFN 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   S+  + G ++  ++   + + ++G  ++ IAT V   GID+    ++I  +     
Sbjct: 266 NRNFSVVALSGELTQNERSHALQAMRDGRARVCIATDVAARGIDLPGLDLVIHADLPTNP 325

Query: 573 LAQLHQLRGRVGRG 586
              LH+  GR GR 
Sbjct: 326 ETLLHR-SGRTGRA 338


>gi|91794704|ref|YP_564355.1| primosomal protein N' [Shewanella denitrificans OS217]
 gi|91716706|gb|ABE56632.1| primosomal protein N' [Shewanella denitrificans OS217]
          Length = 734

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 104/236 (44%), Gaps = 21/236 (8%)

Query: 242 LMRKQFKKEIGIPINVEGKIAQKI-LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L  K + + + + +NV+    + + L   P    K Q  A+  + Q   Q      +L+G
Sbjct: 173 LETKGWLQRVQVQLNVDLSWREALNLGEAPHKLNKQQAVAVAVLTQ---QTGFACTLLEG 229

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
             GSGKT V L  +   ++ G QA+++ P IG+  Q    F +++  +  +I   +T N 
Sbjct: 230 ITGSGKTEVYLAMIETQLKQGKQALVLVPEIGLTPQTISRFKRRFKVDVAVIHSGLTDN- 288

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH--RFGVQQRLKLTQK 417
               R  A      GQA IIIGT +     + Y  +I  I+DE+H   F  Q+ ++   +
Sbjct: 289 ---QRLDAWRMARCGQAAIIIGTRSALFTPMAYPGVI--ILDEEHDASFKQQEGVRYHAR 343

Query: 418 ATAPH--------VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
             A          V+L TATP   +L     G     ++ E+    + +K  II I
Sbjct: 344 DLAVMRGQLENIPVILGTATPSLESLQNALSGRYSHLELGERAGAAQKVKQGIIDI 399


>gi|23099269|ref|NP_692735.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
 gi|22777498|dbj|BAC13770.1| ATP-dependent DNA helicase (recombination protein S)
           [Oceanobacillus iheyensis HTE831]
          Length = 517

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 101/440 (22%), Positives = 185/440 (42%), Gaps = 82/440 (18%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           ++I+ D+   N +L +L    GSGK++     + A ++ G   V+   I ++  Q  E  
Sbjct: 26  EEIITDVMNGNDVLGVL--PTGSGKSICY--QLPAILQDGVTIVVSPLISLMIDQVKELK 81

Query: 342 KKYTQNTQIIVEIITGN--MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL---- 395
            K       I ++I  N  + +  R   L  +  G   +I  +    Q++   +KL    
Sbjct: 82  AKG------IKKVIALNSFLSREERYNVLTNL--GDYRLIYVSPEWLQNASFVHKLKQIN 133

Query: 396 -ILVIVDEQH---RFGVQQR---LKLTQ---KATAPHVLLMTATPIP--RTLVLTSLGDI 443
             L ++DE H   ++G + R   LKL     K   P +L ++AT  P  +  ++ SL   
Sbjct: 134 VTLFVIDEAHCISQWGHEFRPDYLKLHDIIAKLENPTILALSATATPDVQEDIIHSLNRS 193

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA---YWICPQIEEKKESNF 500
            I+K    P  R  I   I  ++ I+E  ER++ ++ +       Y+    + E+     
Sbjct: 194 HITKHI-FPMDRDNIAFCIETMDSINEKKERIQELIQQYHVPTLIYFTSRYLAEETSRWL 252

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            S+V   N         IA  HG M   D+  +   F N    ++  T+   +GI+  D 
Sbjct: 253 SSIVPDRN---------IAYYHGGMEATDRVHIQQQFMNNQLDVICCTSAFGMGINKSDI 303

Query: 561 SIIIIENAEHFGL-AQLH---QLRGRVGRGEEISSCILLYHP--------------PLSK 602
            ++I     H+ L +Q+    Q  GR GR  E S  ++LY                P+ +
Sbjct: 304 RLVI-----HYHLPSQIESYIQEVGRAGRDGEESVAVILYATGDWILPKQIIQQELPMKE 358

Query: 603 NSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           + Y  +  LK   N +   LI EE +   +  E+         +F+ +Q E HD ++E  
Sbjct: 359 DIYRMIDWLKGLSNQDQSTLIDEEVIANLQISEV-------QWRFIRSQLEKHDMIVE-- 409

Query: 660 RKDAKHILTQDPDLTSVRGQ 679
                 ++T+D ++ +++ +
Sbjct: 410 ----NQLITEDVNIENIKAK 425


>gi|320582272|gb|EFW96489.1| RNA helicase [Pichia angusta DL-1]
          Length = 484

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 152/382 (39%), Gaps = 66/382 (17%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           K L  + FS P+K QE A+  ++Q+  +      I Q   G+GKT    +AM   V+   
Sbjct: 108 KGLYAMKFSKPSKIQEKALPLLIQNPPRN----MIGQSQSGTGKTAAFSLAMLTRVDEKD 163

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              QA+ ++P   LA+Q  E + +  + T I V+++           +LER       ++
Sbjct: 164 PMVQALCLSPARELARQTEEVVSQMCKYTNIKVKLVVPG--------SLERDEAVNGQVV 215

Query: 380 IGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT-PIPR 433
           I T  +  D      I +  L + ++DE           L ++  A   L +    P   
Sbjct: 216 IATPGVILDLLRRRKINFSHLKIFVLDEADNM-------LDKQGLADQCLRVKKNIPQST 268

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            LVL S         T     R+  +  +   N ++   E L V     K+ Y  C   +
Sbjct: 269 QLVLFS--------ATFPEEVRRYAEKFVPNANSLELKHEELNV--DAIKQLYMDCDSDQ 318

Query: 494 EKKES-----------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            K E                    +    +  +  +    +++I+HG +   +++ ++D 
Sbjct: 319 HKFEVLCELYGLLTIASSIIFVQTKDTASKLYARMKQEGHAVSILHGDLQPAERDRLIDD 378

Query: 537 FKNGTCKLLIATTVIEVGID------VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           F+ G  K+LI T V+  GID      VV+  I + ++ +      LH++ GR GR     
Sbjct: 379 FREGRSKVLITTNVLARGIDIPSVSMVVNYDIPLDKSGKPDPSTYLHRI-GRTGRFGRTG 437

Query: 591 SCILLYHPPLSKNSYTRLSVLK 612
             I L H    K SY  L  ++
Sbjct: 438 VSISLIH---DKKSYQDLEAIR 456


>gi|316935560|ref|YP_004110542.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315603274|gb|ADU45809.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 701

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 140/329 (42%), Gaps = 46/329 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A  +    +         A+I+AP   LA Q H E    Y  
Sbjct: 40  LVSAQTGSGKTVAYGLAIARDLLDDAEQFAPAAAPLALIVAPTRELALQVHRELSWLYRH 99

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILV 398
               IV  + G  P+  +R+    +A G AHI++GT     D ++  +L        +L 
Sbjct: 100 AGARIVSCVGGMDPRREQRE----LAEG-AHIVVGTPGRLCDHLRRNRLDVSQLKAVVLD 154

Query: 399 IVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV-LTSLGDIDISKITEKPA-- 453
             DE    G ++ ++   + T      LL +AT +PR ++ L      D  +I  + A  
Sbjct: 155 EADEMLDLGFREDMEFILETTPETRRTLLFSAT-LPRGIIALAKTYQHDAMRIEVEGAEG 213

Query: 454 GRKPIKTVIIPINRID---EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           G   I+   I I   D    V+  L+ V  E   A   C         N RS V    + 
Sbjct: 214 GHADIEYRAIRIAPGDVEHAVVNVLRYV--ESPTAIVFC---------NTRSAVNHLQTA 262

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 ++  + G ++  ++   +++ ++G  ++ +AT V   GID+ +  ++I  +AE 
Sbjct: 263 LLERGFAVVALSGELTQNERTGALNALRDGRARVCVATDVAARGIDLPNLGLVI--HAEL 320

Query: 571 FGLAQLHQLR-GRVGRGEEISSCILLYHP 598
              A++ Q R GR GR       +LL  P
Sbjct: 321 PNDAEVMQHRSGRTGRAGNKGISVLLVPP 349


>gi|289596778|ref|YP_003483474.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|289534565|gb|ADD08912.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 756

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 18/139 (12%)

Query: 303 GSGKTLVALIAMAAAVEA-GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           G GKT++A++ +   ++  GG+ + +AP   L +QH   IKK T+   +IV  +TG + +
Sbjct: 38  GLGKTIIAILVLVEVLQKKGGKILFLAPTKPLVEQHARTIKKLTKIEDVIV--LTGEVSR 95

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHR----FGVQQRL 412
             R++      +G A +++ T  + Q+ I   +L      LVI DE HR    +      
Sbjct: 96  KKRKE-----LYGSAKVVVATPQIIQNDIIAGELKIGDFSLVIFDEAHRAVGNYAYVYIA 150

Query: 413 KLTQKATAPHVLL-MTATP 430
           K  +K+   H++L +TA+P
Sbjct: 151 KKYRKSREDHLILGITASP 169


>gi|261820728|ref|YP_003258834.1| ATP-dependent RNA helicase DbpA [Pectobacterium wasabiae WPP163]
 gi|261604741|gb|ACX87227.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 490

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 146/324 (45%), Gaps = 60/324 (18%)

Query: 302 VGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIVEII 355
            GSGKT    + L+      +   QA+++ P   LA Q       + ++ QN +I+   +
Sbjct: 80  TGSGKTAAFGIGLLDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILT--L 137

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQ 410
            G  P   +   L+ + H   HI++GT    QD     S+    L ++++DE  R     
Sbjct: 138 CGGQPMGQQ---LDSLVHA-PHIVVGTPGRIQDHLRKRSLSLDSLKVLVLDEADRM---- 189

Query: 411 RLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
              L    T     +++ TP  R TL+ ++    +I +I+ +   R+P +   I  N  +
Sbjct: 190 ---LDMGFTDAIDDVISYTPSDRQTLLFSATYPEEIEQISAR-VQRQP-QRFEIADNVEE 244

Query: 470 EVIER-------------LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             IE+             L  +LS  + A  +   +    + + +SV   F++L     S
Sbjct: 245 SAIEQRFYETTKEQRLPLLIAILSHYQPASCV---VFCNTKRDCQSV---FDALDMRGIS 298

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA-- 574
            ++ +HG +   D++ V+  F N +C++L+AT V   G+D+ + ++++     +F LA  
Sbjct: 299 -VSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELALVV-----NFELAFD 352

Query: 575 -QLHQLR-GRVGR----GEEISSC 592
            ++H  R GR GR    G  +S C
Sbjct: 353 PEVHVHRIGRTGRAGTQGLAVSLC 376


>gi|86750102|ref|YP_486598.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
 gi|86573130|gb|ABD07687.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
          Length = 516

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 144/359 (40%), Gaps = 62/359 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI  +L     +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 23  TPTPIQEQAIPHVLA----RRDVLGIAQ--TGTGKTAAFVLPMLTMLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIP- 432
             D  +   L+L     +I+DE  R         +++  KL         L  TAT  P 
Sbjct: 133 LLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDIERVCKLVPFTR--QTLFFTATMPPE 190

Query: 433 -RTLVLTSLGD---IDISKI---------TEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            R +  T L +   I++SK          ++   GR+P        +   E +  L    
Sbjct: 191 IRRVTETFLHNPEKIEVSKPASTAVTVAQSQVACGREP--------HEKRETLRSLIRAA 242

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           ++ + A   C        +  R V     SL +H   S+  +HG M    + + +D F+ 
Sbjct: 243 TDLQNAIIFC--------NRKREVALLAKSLQKH-GFSVGALHGDMDQSARTAALDQFRK 293

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G   +L+A+ V   G+D+ + S +   +  H     +H++ GR GR   + + I +  P
Sbjct: 294 GELPILVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRV-GRTGRAGRLGTAISIVAP 351


>gi|332218196|ref|XP_003258245.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Nomascus
           leucogenys]
          Length = 737

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 178 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 237

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     +  I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 238 LSVAC-FYGGTSYQSQ----INHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 291

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 292 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 346

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 347 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 400

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 401 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 456

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 457 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 494


>gi|325126064|gb|ADY85394.1| Primosomal replication factor [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 793

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P      Q +A+  + QD+  +     +L+G  GSGKT V L A++ A+  G  A+++ P
Sbjct: 254 PLDLNDEQAAALSRVSQDIKGRVSQTFLLEGVTGSGKTEVYLQAISQALALGRTALMLVP 313

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            I +  Q   +   ++ Q     V ++   + +  R     RI  GQA +++G  +    
Sbjct: 314 EISLTPQMVKQVQARFGQQ----VAVLHSALSEGERYDEWRRIRRGQAQVVVGARSAVFA 369

Query: 389 SIQYYKLILVIVDEQHRFGVQQ 410
            +    L L+I+DE+H    +Q
Sbjct: 370 PLD--NLGLIIIDEEHEGSYKQ 389


>gi|260802690|ref|XP_002596225.1| hypothetical protein BRAFLDRAFT_276047 [Branchiostoma floridae]
 gi|229281479|gb|EEN52237.1| hypothetical protein BRAFLDRAFT_276047 [Branchiostoma floridae]
          Length = 924

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 179/405 (44%), Gaps = 58/405 (14%)

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV----EGKIAQKILRNIP- 270
           KDF    P  ++L+ DE+ A +  +  +R + K   G P  V    +  +++K+L  +  
Sbjct: 198 KDFYVEVPELQKLSEDEVKAMRAEMEDVRVKGK---GCPKPVLHWVQSGVSKKVLACLKK 254

Query: 271 ---FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------E 319
                PT  Q  AI  I   MS ++ M+ I +   GSGKTL  LI M   +         
Sbjct: 255 HGFEKPTPIQAQAIPVI---MSGRD-MIGIAK--TGSGKTLAFLIPMFRHILDQRPLEDT 308

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G   VIM P   LA Q  +  KK+T++  + V  + G    + +   L+R     A II
Sbjct: 309 EGPIGVIMTPTRELALQITKECKKFTRHMNLKVVCVYGGTGISEQIAELKR----GAEII 364

Query: 380 IGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL--LMTAT 429
           I T     D +           +   +++DE  R        +      P V+  + +  
Sbjct: 365 ICTPGRMIDMLAANNGRVTNLRRCTYLVLDEADR--------MFDMGFEPQVMHIVNSVR 416

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P  +T++ ++    ++  +  K   +KPI+  +   + +   +E+  +VL E +K + + 
Sbjct: 417 PDRQTVMFSATFPRNMEALARKVL-QKPIEVQVGGRSVVCSDVEQHVIVLEEEQKFFKLL 475

Query: 490 PQIEEKKESNFRSV-VER-------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
             +   +E     V VER          L +   S +++ HG +   D++S+++ FK+G 
Sbjct: 476 ELLGNYQEKGSVLVFVERQEVADTLLKDLLKAAYSCLSL-HGGIDQYDRDSIINDFKSGN 534

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            +LL+AT+V   G+DV    ++I  +  +     +H++ GR GR 
Sbjct: 535 IRLLVATSVAARGLDVKQLILVINYDCPNHYEDYVHRV-GRTGRA 578


>gi|194205945|ref|XP_001503679.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Equus
           caballus]
          Length = 738

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 178 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 237

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     +  I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 238 LSVAC-FYGGTSYQSQ----INHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 291

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 292 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 346

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 347 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 400

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 401 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 456

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 457 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 494


>gi|183598940|ref|ZP_02960433.1| hypothetical protein PROSTU_02380 [Providencia stuartii ATCC 25827]
 gi|188021152|gb|EDU59192.1| hypothetical protein PROSTU_02380 [Providencia stuartii ATCC 25827]
          Length = 457

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 143/327 (43%), Gaps = 52/327 (15%)

Query: 299 QGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIV 352
           Q   GSGKT    + +   ++A     Q++++ P   LA Q       + +Y  N +I+ 
Sbjct: 46  QAKTGSGKTAAFGLGLLQHIDAKQFSTQSLVLCPTRELADQVASELRRLARYMANIKILT 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR-- 405
             + G +P + +R +L    H  AHII+ T       L +++++   L  +++DE  R  
Sbjct: 106 --LCGGVPFSVQRDSL---IHA-AHIIVATPGRLLDHLNKETVKLDTLQTLVLDEADRML 159

Query: 406 -------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
                        +    R  L   AT P  +   +  I R  +      I+I+ + E P
Sbjct: 160 DMGFADDIDEVISYAPISRQTLLFSATWPETITAMSQRIQRNAIT-----IEINSVDELP 214

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    I+     + R  E I+ L+ +LS+ + A  +   +    + + ++V +  N  H+
Sbjct: 215 A----IEQRFYEVAR-HEKIDLLQKLLSQQQPASCV---VFCNTKKDCQAVYDALNECHQ 266

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               S+ ++HG M   +++  +  F NG+ ++L+AT V   G+D+    ++I  N E   
Sbjct: 267 ----SVLVLHGDMEQRERDQTLVRFANGSSRVLVATDVAARGLDIKSLDMVI--NYELSW 320

Query: 573 LAQLHQLR-GRVGRGEEISSCILLYHP 598
             ++H  R GR  R  E    I L  P
Sbjct: 321 DPEVHVHRIGRTARAGESGLAISLCAP 347


>gi|169831556|ref|YP_001717538.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638400|gb|ACA59906.1| DEAD/DEAH box helicase domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 533

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 127/322 (39%), Gaps = 42/322 (13%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   G+GKT    + L+    A     Q ++M P   LA Q  E   +  + T   V  +
Sbjct: 51  QAQTGTGKTAAFAIPLLMRLQARRGWPQVLVMTPTRELAIQVAEEFARVGRYTNTRVLPV 110

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFG 407
            G      + K L+R       +++GT     D +        Q   ++L   DE    G
Sbjct: 111 YGGQSIGRQIKTLQR----GVDVVVGTPGRVLDHLNRKTLRLEQLQAVVLDEADEMLDMG 166

Query: 408 VQQRLKLTQKATAP--HVLLMTAT-PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
               ++    AT P    LL +AT P P            I+++ EK   R P+   I P
Sbjct: 167 FIDDIESILNATPPSRQTLLFSATIPGP------------IARLAEKYM-RTPVHVSINP 213

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS--- 516
                  I ++   L        +C  ++   E+  R+++      R + L E   S   
Sbjct: 214 EYVAAPDIWQVYYELRNIDHLEALCRILD--AEAVERAIIFCRTKRRVDELAEALRSRGY 271

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S   IHG +    +  VM +F+ G   LL+AT V   GIDV + S +I  +      + +
Sbjct: 272 SADHIHGDLEQNQRNRVMGAFREGEIDLLVATDVAARGIDVQNISHVINYDCPQDPESYV 331

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           H++ GR GR     + I L +P
Sbjct: 332 HRI-GRTGRAGRTGTAITLVYP 352


>gi|109089503|ref|XP_001111043.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Macaca mulatta]
 gi|296220521|ref|XP_002756344.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Callithrix
           jacchus]
          Length = 737

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 178 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 237

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     +  I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 238 LSVAC-FYGGTSYQSQ----INHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 291

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 292 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 346

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 347 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 400

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 401 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 456

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 457 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 494


>gi|13129006|ref|NP_076950.1| ATP-dependent RNA helicase DDX50 [Homo sapiens]
 gi|297686803|ref|XP_002820928.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Pongo abelii]
 gi|55976580|sp|Q9BQ39|DDX50_HUMAN RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
           box protein 50; AltName: Full=Gu-beta; AltName:
           Full=Nucleolar protein Gu2
 gi|13540304|gb|AAK29402.1|AF334103_1 nucleolar protein GU2 [Homo sapiens]
 gi|12653021|gb|AAH00272.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
 gi|55664207|emb|CAH72376.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
 gi|119574689|gb|EAW54304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
 gi|123983644|gb|ABM83473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
 gi|123998165|gb|ABM86684.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
          Length = 737

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 178 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 237

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     +  I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 238 LSVAC-FYGGTSYQSQ----INHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 291

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 292 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 346

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 347 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 400

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 401 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 456

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 457 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 494


>gi|116514365|ref|YP_813271.1| primosomal protein N' [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|116093680|gb|ABJ58833.1| replication restart DNA helicase PriA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 793

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P      Q +A+  + QD+  +     +L+G  GSGKT V L A++ A+  G  A+++ P
Sbjct: 254 PLDLNDEQAAALSRVSQDIKGRVSQTFLLEGVTGSGKTEVYLQAISQALALGRTALMLVP 313

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            I +  Q   +   ++ Q     V ++   + +  R     RI  GQA +++G  +    
Sbjct: 314 EISLTPQMVKQVQARFGQQ----VAVLHSALSEGERYDEWRRIRRGQAQVVVGARSAVFA 369

Query: 389 SIQYYKLILVIVDEQHRFGVQQ 410
            +    L L+I+DE+H    +Q
Sbjct: 370 PLD--NLGLIIIDEEHEGSYKQ 389


>gi|329663131|ref|NP_001192982.1| ATP-dependent RNA helicase DDX50 [Bos taurus]
 gi|297491479|ref|XP_002698910.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus]
 gi|296472173|gb|DAA14288.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus]
          Length = 737

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 178 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDVTRK 237

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     +  I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 238 LSVAC-FYGGTSYQSQ----INHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 291

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 292 -----VDQMLDLGFAEQVEDILHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 346

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 347 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 400

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 401 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 456

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 457 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 494


>gi|104774280|ref|YP_619260.1| PriA (primosomal protein N') [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423361|emb|CAI98214.1| PriA (Primosomal protein N') [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 793

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P      Q +A+  + QD+  +     +L+G  GSGKT V L A++ A+  G  A+++ P
Sbjct: 254 PLDLNDEQAAALSRVSQDIKGRVSQTFLLEGVTGSGKTEVYLQAISQALALGRTALMLVP 313

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            I +  Q   +   ++ Q     V ++   + +  R     RI  GQA +++G  +    
Sbjct: 314 EISLTPQMVKQVQARFGQQ----VAVLHSALSEGERYDEWRRIRRGQAQVVVGARSAVFA 369

Query: 389 SIQYYKLILVIVDEQHRFGVQQ 410
            +    L L+I+DE+H    +Q
Sbjct: 370 PLD--NLGLIIIDEEHEGSYKQ 389


>gi|253689218|ref|YP_003018408.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755796|gb|ACT13872.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 460

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 137/317 (43%), Gaps = 46/317 (14%)

Query: 302 VGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIVEII 355
            GSGKT    + L+      +   QA+++ P   LA Q       + ++ QN +I+   +
Sbjct: 50  TGSGKTAAFGIGLLDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILT--L 107

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQ 410
            G  P   +   L+ + H   HI++GT    QD     S+    L ++++DE  R     
Sbjct: 108 CGGQPMGQQ---LDSLVHA-PHIVVGTPGRIQDHLRKQSLSLDSLKVLVLDEADRM---- 159

Query: 411 RLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
              L    T     +++ TP  R TL+ ++    +I +I+ +   R+P +  I    +  
Sbjct: 160 ---LDMGFTDAIDDVISYTPSDRQTLLFSATYPEEIEQISAR-VQRQPQRFEIADDVKES 215

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNF------RSVVERFNSLHEHFTSSIAIIHG 523
            + +R      E +    I      +  S        R     F++L     S +A+ HG
Sbjct: 216 AIEQRFYETTKEQRLPLLISILGHHQPSSCVVFCNTKRDCQSVFDALDMRGISVLAL-HG 274

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA---QLHQLR 580
            +   D++ V+  F N +C++L+AT V   G+D+ +  +++     +F LA   ++H  R
Sbjct: 275 DLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELELVV-----NFELAFDPEVHVHR 329

Query: 581 -GRVGR----GEEISSC 592
            GR GR    G  +S C
Sbjct: 330 IGRTGRAGMQGLAVSLC 346


>gi|160889762|ref|ZP_02070765.1| hypothetical protein BACUNI_02193 [Bacteroides uniformis ATCC 8492]
 gi|156860754|gb|EDO54185.1| hypothetical protein BACUNI_02193 [Bacteroides uniformis ATCC 8492]
          Length = 445

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 131/365 (35%), Gaps = 73/365 (20%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           IL N+        + A K+  Q          +L    GSGKTL  L+ +   ++A   G
Sbjct: 6   ILHNLKIQELTPMQEAAKEAYQSAQD-----LVLLSPTGSGKTLAFLLPLVQTLKADIQG 60

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q     K  +  T        G  P     + ++ I      +IIG
Sbjct: 61  VQALVLVPSRELALQIETVFK--SMGTPFKAMSCYGGRPAMEEHRTMKGI---HPTVIIG 115

Query: 382 THALFQDSIQ-----YYKLILVIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPI 431
           T     D ++        ++ +++DE  +   FG    +   + Q  +    +L++AT  
Sbjct: 116 TPGRMSDHLRKENFNAATVVTLVIDEFDKCLEFGFHDEMAEVIGQLPSLKKRVLLSATDA 175

Query: 432 PRTLVLTSLGDIDISKIT----------EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                   +G    S  +          E  A R  +  VI P     E +  L   L  
Sbjct: 176 EEIPQFAGVGGDSPSSGSRLMKLDFLAPEALAPRLRLHKVISPEKDKLETLYNLLCTLGY 235

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                +           N+R  VER     +       + HG M   D+E  +  F+NG+
Sbjct: 236 HSTLVF----------CNYRESVERVVGYLKARKFPCDMFHGGMEQPDRERALYKFRNGS 285

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           C +LI+T +   G+D+       IEN  H                         YHPP++
Sbjct: 286 CAVLISTDLAARGLDIPG-----IENVVH-------------------------YHPPVN 315

Query: 602 KNSYT 606
           + +YT
Sbjct: 316 EEAYT 320


>gi|254284613|ref|ZP_04959580.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           AM-19226]
 gi|150425398|gb|EDN17174.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           AM-19226]
          Length = 428

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 118/278 (42%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E + +      +    + G
Sbjct: 66  ANTGSGKTLAYGLPLLERLKTSPEQQALMLVPTRELAMQVSEVLTQVGTPLGLNTLCLCG 125

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +  ++ AL        +I++ T      L Q  +   ++  +++DE  R        
Sbjct: 126 GVDKTEQQNALAE----NPNILVATTGRLFDLTQSGLSLNRVTTLVLDEADR-------- 173

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 174 LLDMGFWPQVQALASQTAGVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAV 233

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +      +HG  S
Sbjct: 234 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKS 293

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             ++E+ +  FKNG+ ++LIAT ++  GI +    ++I
Sbjct: 294 QSEREAALAEFKNGSTQVLIATDLLARGIHIEQLPVVI 331


>gi|150390547|ref|YP_001320596.1| primosomal protein N' [Alkaliphilus metalliredigens QYMF]
 gi|149950409|gb|ABR48937.1| primosomal protein N' [Alkaliphilus metalliredigens QYMF]
          Length = 829

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 12/187 (6%)

Query: 261 IAQKILRNIP-FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           +AQ+     P F P + Q+  I +I Q + Q+ R   +L G  GSGKT + L  +     
Sbjct: 270 LAQQDYAAFPKFLPNEEQKGVIDEITQLIKQERRQNYLLHGITGSGKTEIYLQLIEEVNR 329

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G Q +++ P  +L  Q  E  K    +    + ++  ++    R     RI  G+ + +
Sbjct: 330 MGKQGIVLVPEIVLTPQTIERFKGRFGDG---IAVLHSHLSDGERFDEWRRIQSGEVNTV 386

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH--------VLLMTATPI 431
           IG  +     +Q   LI++  + +H +  +Q  K      A          V+L +ATP 
Sbjct: 387 IGARSAIFAPLQNLGLIIIDEEHEHTYKSEQNPKYHAVEVAKQRGVIENAIVILGSATPS 446

Query: 432 PRTLVLT 438
                LT
Sbjct: 447 VEDYSLT 453


>gi|296220523|ref|XP_002756345.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Callithrix
           jacchus]
          Length = 711

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 178 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 237

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     +  I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 238 LSVAC-FYGGTSYQSQ----INHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 291

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 292 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 346

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 347 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 400

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 401 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 456

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 457 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 494


>gi|221196848|ref|ZP_03569895.1| ATP-dependent DNA helicase RecQ [Burkholderia multivorans CGD2M]
 gi|221203518|ref|ZP_03576537.1| ATP-dependent DNA helicase RecQ [Burkholderia multivorans CGD2]
 gi|221177452|gb|EEE09880.1| ATP-dependent DNA helicase RecQ [Burkholderia multivorans CGD2]
 gi|221183402|gb|EEE15802.1| ATP-dependent DNA helicase RecQ [Burkholderia multivorans CGD2M]
          Length = 609

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF----G 572
           S+A  HGRM    +    D F NG  +L++AT    +GID  D   +I     H+     
Sbjct: 276 SVARYHGRMPARQRRDEQDRFMNGDARLIVATNAFGMGIDKPDVRFVI-----HYQIPGN 330

Query: 573 LAQLHQLRGRVGRGEEISSCILLY 596
           L   +Q  GR GR  E + C+LL+
Sbjct: 331 LDAYYQETGRAGRDGEAADCVLLF 354


>gi|74210167|dbj|BAE21355.1| unnamed protein product [Mus musculus]
          Length = 690

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 153/396 (38%), Gaps = 65/396 (16%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E   P NV   IA++        PT  Q       L  +     M+ + Q   GSGKTL 
Sbjct: 173 EANFPANVMDVIARQNFT----EPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLS 222

Query: 310 ALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L+     +          G   +++AP   LAQQ  +   +Y +  ++    I G  P+
Sbjct: 223 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 282

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ---- 409
             + + LER       I I T     D ++  K  L     +++DE  R    G +    
Sbjct: 283 GPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIR 338

Query: 410 --------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                    R  L   AT P  +   A    +  +  ++G +++S      A    ++ V
Sbjct: 339 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------ANHNILQIV 392

Query: 462 II--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517
            +   + + +++I  ++ ++SE           +E K   F     R + L         
Sbjct: 393 DVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELTRKMRRDGW 441

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  +  +     +
Sbjct: 442 PAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYI 501

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 502 HRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 536


>gi|74694926|sp|Q75C39|DBP5_ASHGO RecName: Full=ATP-dependent RNA helicase DBP5
          Length = 467

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 155/373 (41%), Gaps = 66/373 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+K QE A+  +L +  +      I Q   G+GKT    + M + V+      QA+ +AP
Sbjct: 102 PSKIQERALPLLLYNPPRN----MIAQSQSGTGKTAAFSLTMLSRVDVAVPATQAICLAP 157

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH-RRKALERIAHGQAHIIIGTHALFQD 388
              LA+Q  E I++  + T+I  ++I   +P ++ + KA+       AHII+GT     D
Sbjct: 158 -SRLARQTLEVIQEMGKFTKIASQLI---VPDSYEKNKAI------NAHIIVGTPGTVLD 207

Query: 389 -----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
                 IQ  K+   ++DE      +Q L          + +    P    LVL S    
Sbjct: 208 LMRRKMIQLGKVKTFVLDEADNMLDKQGLG------DQCIRVKKFLPKDTQLVLFS---- 257

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK-------- 495
                T   + R+  + V+   N ++  ++R +V +S  K+ +  C     K        
Sbjct: 258 ----ATFDDSVREYARRVVPNANSLE--LQRNEVNVSAIKQLFMDCNDERHKFTVLCDLY 311

Query: 496 ------KESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                     F    +  N L+         ++I+HG +   D++ ++  F+ G  K+LI
Sbjct: 312 GLLTIGSSIIFVQTKQTANMLYTELKREGHQVSILHGDLQSADRDRLIGDFREGRSKVLI 371

Query: 547 ATTVIEVGIDVVDASIII------IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
            T V+  GID+   S+++        N +      +H++ GR GR       I   H   
Sbjct: 372 TTNVLARGIDIPTVSMVVNYDLPMTANGQPDPSTYVHRI-GRTGRFGRTGVAISFIH--- 427

Query: 601 SKNSYTRLSVLKN 613
            K SY  L+ +++
Sbjct: 428 DKKSYETLAAIQS 440


>gi|84502634|ref|ZP_01000753.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597]
 gi|84389029|gb|EAQ01827.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597]
          Length = 471

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/377 (20%), Positives = 155/377 (41%), Gaps = 48/377 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------L 308
           +N++ K+ Q I      SPT  Q+ AI   L+       +L I Q   G+GKT      +
Sbjct: 7   LNLDPKVLQAIADAGYESPTPIQQGAIPPALEGRD----VLGIAQ--TGTGKTASFTLPM 60

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           + L++   A     +++++AP   LA Q  E    YT++ ++   ++ G +    +   +
Sbjct: 61  ITLLSKGRARARMPRSLVLAPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALI 120

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R       ++I T     D  +  KL+L     ++VDE  R        +      P +
Sbjct: 121 DR----GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADR--------MLDMGFIPDI 168

Query: 424 -LLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS- 480
             + + TP  R TL  ++    +I +IT       P +  +       E IE+  V+   
Sbjct: 169 ERIFSLTPFTRQTLFFSATMAPEIERITNTFLS-GPARVEVARQATASETIEQGVVMFKG 227

Query: 481 -----EGKKAYWICPQIEEKKESNFRSVVERFNSLHE---------HFTSSIAIIHGRMS 526
                EG +   +   + +++  + R+ +   N   +          +    A IHG + 
Sbjct: 228 SRRDREGSEKRQVLRDLIDREGEDCRNAIIFCNRKTDVDVTAKSLKKYGFDAAPIHGDLE 287

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              +   ++ F++G+ + L+A+ V   G+D+ + S +   +        +H++ GR GR 
Sbjct: 288 QSQRTKTLEGFRDGSLRFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRI-GRTGRA 346

Query: 587 EEISSCILLYHPPLSKN 603
                 I++  P   KN
Sbjct: 347 GRSGKAIMICVPRDEKN 363


>gi|160331247|ref|XP_001712331.1| eif4A [Hemiselmis andersenii]
 gi|159765778|gb|ABW98006.1| eif4A [Hemiselmis andersenii]
          Length = 401

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 126/308 (40%), Gaps = 34/308 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQ---HYEFIKKYTQ-NTQ 349
           I Q   G+GKT   +I     V+      Q +++ P   LA Q    YE I K+T+  TQ
Sbjct: 63  IAQAQSGTGKTATFVIGTLQNVQYDVFQVQCMVVCPSRELANQIKIVYESIGKFTKIRTQ 122

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQH 404
              E I G   +  R+    +    + HIIIGT     D +   KL+      +++DE  
Sbjct: 123 ---ECIGGTKIKDDRQLLFSK----KPHIIIGTPGRLFDILSIEKLLSQKLEYLVIDEAD 175

Query: 405 R-----FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA--GRKP 457
                 F VQ             + L +AT     L +  L   D  +I  K      + 
Sbjct: 176 EMFSRGFKVQIFRIFKYLPKECKIGLFSATLPKEILQVIELFISDPVRILVKKEELTLEG 235

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           IK   IPI + +  +E L  +    K    I          N R  VE   +  +    S
Sbjct: 236 IKQFYIPIEKEEWKLEALFDIYRSIKAEQSIIY-------VNARKKVEWLANKMKLNDFS 288

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA IHG M   ++   M +F+ G  ++LI T ++  GID+   + +I  +   +  + +H
Sbjct: 289 IAFIHGEMEQSERSETMKNFRFGKFRVLITTDLLSRGIDIEKVNFVINYDLPQYKESYIH 348

Query: 578 QLRGRVGR 585
           ++ GR GR
Sbjct: 349 RI-GRSGR 355


>gi|313126643|ref|YP_004036913.1| ATP dependent helicase, lhr family [Halogeometricum borinquense DSM
           11551]
 gi|312293008|gb|ADQ67468.1| ATP dependent helicase, Lhr family [Halogeometricum borinquense DSM
           11551]
          Length = 948

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 153/379 (40%), Gaps = 50/379 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------EAGGQA 324
           +PT+ Q  AI  +    + KN ++       G+GKT  A++ +  ++        AG  A
Sbjct: 31  TPTEPQRRAIPPL---AAGKNALV---IAPTGTGKTETAMLPVLDSIVESPDEDRAGLSA 84

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           + + P+  L +   E +  + +   I V++  G+  Q  R+K     A+    +++ T  
Sbjct: 85  LYVTPLRALNRDMRERLDWWGEELDIEVDVRHGDTTQYQRQKQ----ANDPPDVLVTTPE 140

Query: 385 LFQDSIQYYKLIL-------VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             Q  +   KL         V+VDE H     +R    Q       L   A P  R  + 
Sbjct: 141 TLQAMLTGEKLRTALSDVRHVVVDEVHELASAKRG--AQLTVGLERLRALAGPFQRIGLS 198

Query: 438 TSLGDID-ISK---------ITEKPAGRKPIKTVIIP-INRIDEVIERLKVVLSEGKKAY 486
            ++G  + + K         I E  AG K   TV+ P + R D+ +        E     
Sbjct: 199 ATVGSPEEVGKFLTGDRSFEIVEVDAGSKVAFTVVHPDVTREDQTLAGQLASEDEMASHV 258

Query: 487 WICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                I    ES     N R   E   S  +     IA+ HG +S   +  V D FK G 
Sbjct: 259 RAIRDIVRDHESTLVFVNTRQTAEALGSRFKRLNEPIAVHHGSLSKDVRIDVEDRFKTGE 318

Query: 542 CKLLIATTVIEVGIDV--VDASIIIIENAEHFGLAQLHQLRGRVG-RGEEISSCILLYHP 598
              LI T+ +E+GIDV  VD    +++      +++L Q  GR G R ++ S   ++   
Sbjct: 319 LDGLICTSSMELGIDVGRVDH---VVQYGSPREVSRLLQRVGRAGHRRDQTSRGTIVTSS 375

Query: 599 PLSKNSYTRLSVLKNTEDG 617
             + +++  L++ +  E G
Sbjct: 376 --ADDTHEALAIARKAEAG 392


>gi|295689524|ref|YP_003593217.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295431427|gb|ADG10599.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 524

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 143/336 (42%), Gaps = 34/336 (10%)

Query: 302 VGSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            G+GKT    + +   +++G       +A+++AP   LA Q     +KY + T++   ++
Sbjct: 48  TGTGKTAAFTLPLIDKLQSGRAKARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALL 107

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQ 410
            G +    + K L+R       ++I T     D  +  KL++     ++VDE  R     
Sbjct: 108 IGGVSFGDQEKKLDR----GVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRM---- 159

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            L +        +  MT  P  +TL  ++    +I+++T++   R P++  +      + 
Sbjct: 160 -LDMGFIPDIERIFKMTP-PKKQTLFFSATMPPEITRLTKQ-FLRDPVRIEVARPATTNA 216

Query: 471 VIERL--KVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERF-NSLHEHFTSSIAI 520
            I +L  KV  S+ K        + EK +        N ++ V+    SL  H   + A 
Sbjct: 217 NITQLLVKVPSSDPKAKRLALRALIEKAQIETGIVFCNRKTEVDIVAKSLKVHGYDA-AP 275

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG +    +   +  F++G  K+L+A+ V   G+D+   S +   +  H     +H++ 
Sbjct: 276 IHGDLDQTQRMKTLADFRSGALKILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRI- 334

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           GR GR        +L  P   K     + ++ +T D
Sbjct: 335 GRTGRAGRTGITYMLVTPADDKGFDKVVKLIGSTPD 370


>gi|322392273|ref|ZP_08065734.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           peroris ATCC 700780]
 gi|321144808|gb|EFX40208.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           peroris ATCC 700780]
          Length = 407

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 154/357 (43%), Gaps = 36/357 (10%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           K  ++ L  + F+ PT+ QE  I  +L       R L + +   GSGKT   L+ +   +
Sbjct: 10  KYIEEALEELKFTTPTEVQEKLIPIVL-----AGRDL-VGESKTGSGKTHTFLLPIFQQL 63

Query: 319 EAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN-MPQAHRRKALERIAHG 374
           +      Q VI AP   LA Q Y+  ++   +++  VEI   N +    + + ++++A  
Sbjct: 64  DEESDSVQVVITAPSRELATQIYQAARQIAGHSE--VEIRVANYVGGTDKARQIDKLASN 121

Query: 375 QAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAP-----HVL 424
           Q HI+IGT     D ++   L +      +VDE         L+   K           +
Sbjct: 122 QPHIVIGTPGRIYDLVKSGDLAIHKAQTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFM 181

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           + +AT IP+ L         + K    P   K IKT  +  + ID  +   K    +  +
Sbjct: 182 VFSAT-IPQKLQPF------LKKYLSNPVMEK-IKTKTVISDTIDNWLISTKG-RDKNAQ 232

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGT 541
            Y +   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN  
Sbjct: 233 IYELTQVMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLD 292

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            + ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|225557690|gb|EEH05975.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus G186AR]
          Length = 487

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 146/331 (44%), Gaps = 52/331 (15%)

Query: 300 GDVGSGKTL---VALIAMAAAVEAGGQ-----AVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   V  I     + A        AVI+ P   LA Q Y+ + K+T N  + 
Sbjct: 114 AETGSGKTLAFGVPCIRKVLEINASHSSFRISAVIITPTRELAMQIYDQLVKFTPNG-VG 172

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
           +  I G   +  +R+AL++     A +I+ T    +D     S+   K+  +++DE  R 
Sbjct: 173 LACIYGGASKDDQRRALKK-----ASVIVATPGRLKDFHSDESLNLKKVKYLVLDEADRM 227

Query: 407 ---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI- 462
              G +Q +K         V  M ++   +T++ T+   I + K+      ++P+   I 
Sbjct: 228 LDKGFEQDIKDI-------VSTMPSSRKRQTVMFTATWPISVRKLATTFM-KEPVTVTIG 279

Query: 463 ------IPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF------NS 509
                 I  N RI +++E   VV  E K++  +    + ++  N    V  F       +
Sbjct: 280 GDLSSDIRANTRIKQIVE---VVKPENKESRLLSLLNQYQRGRNAMDKVLVFCLYKKEAT 336

Query: 510 LHEHFTSS----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             E F  S    +A IHG M+  ++ + +++FK+G+  +L+AT V   G+D+    +++ 
Sbjct: 337 RIERFIRSKGFKVAGIHGDMNQTERFNSLNAFKSGSVPVLVATDVAARGLDIPAVKLVLN 396

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
                     +H++ GR GR       I ++
Sbjct: 397 VTFPLTVEDYVHRI-GRTGRAGSDGLAITMF 426


>gi|86747306|ref|YP_483802.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
 gi|86570334|gb|ABD04891.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
          Length = 679

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 146/341 (42%), Gaps = 46/341 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A  +          A   A+I+AP   LA Q H E    Y  
Sbjct: 40  LVSAQTGSGKTVAYGLAIAPDLLGEAERFEPAAAPLALIVAPTRELALQVHRELGWLYGA 99

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILV 398
               +V  + G  P+  +R+    +A G AHI++GT     D ++  +L        +L 
Sbjct: 100 TGARVVSCVGGMDPRREQRE----LAEG-AHIVVGTPGRLCDHLRRNRLDVSQLKAVVLD 154

Query: 399 IVDEQHRFGVQQRLKLTQKAT--APHVLLMTATPIPR---TLVLTSLGDIDISKITEKPA 453
             DE    G ++ ++   K T  +   LL +AT +PR    L  T   +    ++  +  
Sbjct: 155 EADEMLDLGFREDMEFILKTTPDSRRTLLFSAT-LPRGIIALAKTYQHNAFRVEVAGREG 213

Query: 454 GRKPI--KTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           G   I  + + I  N ++  V+  L+ V  E   A   C           RS V    + 
Sbjct: 214 GHADIEYRAIRIAPNDVEHAVVNTLRYV--ESPTAIVFC---------ATRSGVTHLQTA 262

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 S+  + G ++  ++ + +++ ++G  ++ +AT V   GID+ +  ++I  +A+ 
Sbjct: 263 LLERGFSVVALSGELTQNERTNALNALRDGRARVCVATDVAARGIDLPNLGLVI--HADL 320

Query: 571 FGLAQLHQLR-GRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
               ++ Q R GR GR  +    +LL  P   + + + L +
Sbjct: 321 PNDPEVMQHRSGRTGRAGKKGISVLLVPPARRRRAESLLGL 361


>gi|73952797|ref|XP_860793.1| PREDICTED: similar to nucleolar protein GU2 isoform 3 [Canis
           familiaris]
 gi|73952799|ref|XP_860823.1| PREDICTED: similar to nucleolar protein GU2 isoform 4 [Canis
           familiaris]
 gi|73952805|ref|XP_860916.1| PREDICTED: similar to nucleolar protein GU2 isoform 6 [Canis
           familiaris]
          Length = 673

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 114 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 173

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     +  I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 174 LSVAC-FYGGTSYQSQ----INHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 227

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 228 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 282

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 283 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 336

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 337 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 392

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 393 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 430


>gi|329894769|ref|ZP_08270570.1| Helicase PriA essential for oriC/DnaA-independent DNA replication
           [gamma proteobacterium IMCC3088]
 gi|328922758|gb|EGG30091.1| Helicase PriA essential for oriC/DnaA-independent DNA replication
           [gamma proteobacterium IMCC3088]
          Length = 730

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 44/257 (17%)

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
            I+ +P++A   E     R       L A   +  +++    K + IP  +E        
Sbjct: 134 GILRSPKQAALIERLQ--RHEATRSALKAEGFSSSIIKALIDKGLAIPCRIE-------- 183

Query: 267 RNIPFSPTKS---------QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  FSP++S         Q+ A+  + Q    K  +L    G  GSGKT V L  +A  
Sbjct: 184 -DSEFSPSESDPQPRLNSQQQFAVAQLSQHAGFKASLL---YGITGSGKTEVYLQTIANT 239

Query: 318 VEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           + +G QA+++ P I +  Q    F  ++       V ++   + +  R +  ER   G+ 
Sbjct: 240 IASGAQAMVLVPEIALTPQTAARFQGRFG----ACVGVLHSGLTETQRAREWERARTGKL 295

Query: 377 HIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVL 424
            +++GT  ALF     +  L L++VDE+H    +Q+           +K  Q    P ++
Sbjct: 296 QVLLGTRSALF---TPFQNLGLIVVDEEHDSAYKQQDGFRYHARDLAVKRAQIEQCP-II 351

Query: 425 LMTATPIPRTLVLTSLG 441
           L +ATP   T+   ++G
Sbjct: 352 LGSATPSLETISNVNIG 368


>gi|322516110|ref|ZP_08069045.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           vestibularis ATCC 49124]
 gi|322125405|gb|EFX96755.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           vestibularis ATCC 49124]
          Length = 447

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 152/361 (42%), Gaps = 50/361 (13%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGD--VGSGKTLVALIAMAAAVE 319
           QK L  I F  PT  Q+  I  +        R  R L G+   GSGKT   L+ +   + 
Sbjct: 13  QKALDEIKFKEPTPVQQKLIPVV--------RSGRDLVGESKTGSGKTHTFLLPIFEKLN 64

Query: 320 AGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 Q VI AP   LA Q Y+  K+  ++++  + ++   +    +++ +E++   Q 
Sbjct: 65  PKSGDVQVVITAPSRELATQIYQATKQIAKHSETEIRVVN-YVGGTDKQRQIEKLKVAQP 123

Query: 377 HIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAP-----HVLLM 426
           HI+IGT     D ++   L +      +VDE         L    K  A       +L+ 
Sbjct: 124 HIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTMDTGFLDTVDKIAASLPKEVQILVF 183

Query: 427 TATPIPRTL---VLTSLGDIDISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVLS 480
           +AT IP+ L   +   L +  + +I         I   ++     N+ ++++E LK    
Sbjct: 184 SAT-IPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVSTKGRNKNEQILEMLK---- 238

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
            G + Y             F +  ER + LH +  S+   +A IHG +   +++ +M+  
Sbjct: 239 -GMQPYLAMI---------FVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQV 288

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K    + ++AT +   GID+   S +I +         +H++ GR GR     + I LY 
Sbjct: 289 KKLEFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLSGTAITLYQ 347

Query: 598 P 598
           P
Sbjct: 348 P 348


>gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
           HB-1]
 gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
           HB-1]
          Length = 417

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 163/378 (43%), Gaps = 57/378 (15%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--- 318
           QK L  + F  PT  Q+ AI   L+          + Q   G+GKT    I + + +   
Sbjct: 13  QKSLEEMGFVEPTPIQKEAIPLALEGHDL------VGQAQTGTGKTAAFGIPLVSGISPR 66

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           E G +A+++ P   LA Q    +    +N  +    I G +    +  AL+R   G+  I
Sbjct: 67  ERGVKAIVLTPTRELAIQVAHELSLIGKNKGVSAFPIYGGVSIERQINALKR---GRHQI 123

Query: 379 IIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTA 428
           I+GT    +D I    L L      ++DE  +    G  + ++  L++       LL +A
Sbjct: 124 IVGTPGRVKDLINRGVLRLDRVRYAVLDEADQMLDMGFIEDIEEILSKTPKEKQTLLFSA 183

Query: 429 TPIP---RTLVLTSLG----DIDISK--ITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           T +P   R L+   L     ++ + K  IT K      +K  II + R ++ I+ L+ +L
Sbjct: 184 T-MPYEIRRLIGRYLKPDYKNVKVGKQLITPK------VKQRIILV-RSEDKIKALEKLL 235

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            E +    I     ++  ++    ++R          +   IHG +S   +E VM +F+ 
Sbjct: 236 KEHEGVSTIVFVKTKRDAADIEKELQRRGI-------NARAIHGDLSQRQREFVMRAFRE 288

Query: 540 GTCKLLIATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           G  K+L+AT V   GID+ D  ++I     EN E +    +H++ GR GR       I L
Sbjct: 289 GKVKVLVATDVAARGIDIKDVGLVINYELPENPESY----VHRI-GRTGRAGREGLAISL 343

Query: 596 YHPPLSKNSYTRLSVLKN 613
              P  +  Y R+  LK 
Sbjct: 344 VAEPEKRRLY-RIKGLKG 360


>gi|150016028|ref|YP_001308282.1| primosome assembly protein PriA [Clostridium beijerinckii NCIMB
           8052]
 gi|149902493|gb|ABR33326.1| primosomal protein N' [Clostridium beijerinckii NCIMB 8052]
          Length = 732

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/416 (20%), Positives = 158/416 (37%), Gaps = 104/416 (25%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T+ QE+ +  IL    QK     +++G  GSGKT V +  +   +      +++ P I +
Sbjct: 202 TREQENCLNTILNSPDQK----YLIKGVTGSGKTEVYIRLVEEMLSQNKSTIVLVPEISL 257

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
             Q    F  ++ +N    V +    +    R     R+  G+A ++IG  +     +Q 
Sbjct: 258 TPQMIERFKGRFGEN----VALFHSRLSDGERFDEWYRVKEGKAKLVIGARSALFLPLQ- 312

Query: 393 YKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
             L L+I+DE+H          ++  ++  +   +     +++ +ATP   +      G+
Sbjct: 313 -NLGLIIIDEEHENTYKSEHNPKYHTREVSEFICEIKDCKLVMGSATPSIESYYKAIRGE 371

Query: 443 IDISKITEKPAGR----------------------------------KPIKTVIIPINR- 467
             + ++ ++  G+                                  K  K VI+ +NR 
Sbjct: 372 YKLIEMHKRTNGKEMPHMEIVDMREELKSKNLSLFSRKLLAEIEATLKDKKQVILFLNRR 431

Query: 468 ----------IDEVIE--RLKVVLSEGKKAYWIC-------------PQIEEKKESNFRS 502
                        V +     V ++  K  Y IC             P+   K    F +
Sbjct: 432 GYSTFISCRSCGYVFKCPECDVSMTYHKNGYLICHYCGRAEKSKTVCPKCNSKYVKFFGA 491

Query: 503 VVERFN-SLHEHFTSSIAIIHGRMSDIDK-------ESVMDSFKNGTCKLLIATTVIEVG 554
             ER    + ++F  S A+   RM D+D        ES+ + FKNG   +LI T ++  G
Sbjct: 492 GTERVELEVKKYFPKSRAL---RM-DVDTTRHKNSHESIYNCFKNGEADILIGTQMVSKG 547

Query: 555 IDVVDASIIIIENAE-HFGLAQ----------LHQLRGRVGRGEEISSCILLYHPP 599
           +D  + +++ +  A+    L            + Q+ GR GRGE+    I+  + P
Sbjct: 548 LDFKNVTLVGVLAADMSLNLPDYRASERTYQIITQVAGRSGRGEDEGKVIVQSYTP 603


>gi|325685888|gb|EGD27954.1| primosome assembly protein PriA [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 793

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P      Q +A+  + QD+  +     +L+G  GSGKT V L A++ A+  G  A+++ P
Sbjct: 254 PLDLNDEQAAALSRVSQDIKGRVSQTFLLEGVTGSGKTEVYLQAISQALALGRAALMLVP 313

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            I +  Q   +   ++ Q     V ++   + +  R     RI  GQA +++G  +    
Sbjct: 314 EISLTPQMVKQVQARFGQQ----VAVLHSALSEGERYDEWRRIRRGQAQVVVGARSAVFA 369

Query: 389 SIQYYKLILVIVDEQHRFGVQQ 410
            +    L L+I+DE+H    +Q
Sbjct: 370 PLD--NLGLIIIDEEHEGSYKQ 389


>gi|239946654|ref|ZP_04698407.1| ATP-dependent RNA helicase RhlE [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920930|gb|EER20954.1| ATP-dependent RNA helicase RhlE [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 410

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 137/313 (43%), Gaps = 33/313 (10%)

Query: 302 VGSGKTLVALIAMAAA-VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGKTL  L+ +  + ++    A+I+ P   LA Q +  + K T   +I   ++ G  P
Sbjct: 45  TGSGKTLAYLLPLIDSFIKNKTTALILVPTRELATQIHSTLNKVTTPYKINSAVLIGGEP 104

Query: 361 QAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRL 412
              +   L++       +IIGT       L + S++  ++ + ++DE  R    G++++L
Sbjct: 105 MPKQFMQLKK----NPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQL 160

Query: 413 KLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +   K       VL+ +AT +P+ ++  S   ++            P++  +   N+   
Sbjct: 161 EGINKFLPEKRQVLMFSAT-MPKHIIALSQKYLN-----------NPVRITVGATNKAAA 208

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRM 525
            I++  + +S+ +K   +  Q+  ++ S       +   ++   + ++       IHG +
Sbjct: 209 EIKQESLHISDKEKFSELTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDL 268

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S   +E V+ SF+    ++++AT V   G+D+     +I  +        LH++ GR GR
Sbjct: 269 SQHQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRI-GRTGR 327

Query: 586 GEEISSCILLYHP 598
                  +    P
Sbjct: 328 AGATGYALSFISP 340


>gi|254508165|ref|ZP_05120290.1| putative primosomal protein N' [Vibrio parahaemolyticus 16]
 gi|219548887|gb|EED25887.1| putative primosomal protein N' [Vibrio parahaemolyticus 16]
          Length = 733

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 7/137 (5%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   +E G QA+++ P IG+  Q    F K++T    + VE+I
Sbjct: 221 LLEGVTGSGKTEVYLNLIKPVLEKGKQALVLVPEIGLTPQTINRFKKRFT----VPVEVI 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +  + R  A        A I+IGT +       ++ L ++IVDE+H    +Q+  L 
Sbjct: 277 HSGLNDSERLNAWLSARDNAAGIVIGTRSALLTP--FHNLGIIIVDEEHDASYKQQDSLR 334

Query: 416 QKATAPHVLLMTATPIP 432
             A    V+      IP
Sbjct: 335 YHARDVAVMRANKEQIP 351


>gi|159117719|ref|XP_001709079.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           ATCC 50803]
 gi|157437194|gb|EDO81405.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           ATCC 50803]
          Length = 391

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 134/307 (43%), Gaps = 35/307 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I M   ++ G    QA+I++P   LA Q  + +       ++ V 
Sbjct: 61  IAQAQSGTGKTAAFTIGMLQRIDIGLKSPQAIILSPTRELALQTLKVVDGIGSRLKVQVA 120

Query: 354 IITGNMPQAHRRKALERIAHGQA-HIIIGTHA-----LFQDSIQYYKLILVIVDEQH--- 404
              G        +  + IA  Q+ H+I+ T       L +  +    + +V++DE     
Sbjct: 121 QCIGGT------QVDDDIAAAQSCHLIVATPGRLLSLLQKKYVTTSNVKMVVLDEADEML 174

Query: 405 -RFGVQQRLKLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPA--GRKPIKT 460
            R   +Q + + +   A   ++L++AT  P  L LT     D   I  K A      I+ 
Sbjct: 175 SRGFTEQIVSIMKFMNADIQIVLVSATLPPEILELTRQFMRDPVSILVKEAELTLDGIRQ 234

Query: 461 VIIPINRI--DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            ++ +      EV+E +  VLS  ++    C  I   KE     + E+  S       ++
Sbjct: 235 YVVELQDAWKTEVVEDIYKVLSV-QQGVIFCNSIGRVKE-----LAEKLKSAGH----TL 284

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           + IH  +   ++  +M  F++G  ++LIAT +I  GIDV + S++I  +        LH+
Sbjct: 285 SCIHSELDQAERNKIMGEFRSGQTRILIATNIIARGIDVQNVSLVINYDIPREPETYLHR 344

Query: 579 LRGRVGR 585
           + GR GR
Sbjct: 345 I-GRSGR 350


>gi|318603865|emb|CBY25363.1| helicase PriA essential for oriC/DNAA-independent DNA replication
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 732

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 107/499 (21%), Positives = 196/499 (39%), Gaps = 134/499 (26%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENILAQGSQALVLVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
              +  + R     R  +G+A I+IGT  ALF     + +L ++I+DE+H          
Sbjct: 277 HSGLNDSERLSVWLRARNGEAAIVIGTRSALF---TPFSRLGVIIIDEEHDSSYKQQEGW 333

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP------- 457
           R+  +       +     +++ TATP   TL    +G      ++++    KP       
Sbjct: 334 RYHARDLAVFRAREEGIPIVMGTATPALETLHNVQMGKYRQLTLSKRAGNAKPAVQHLLD 393

Query: 458 IKTVIIPINRIDEVIERLK--------VVLSEGKKAY----------WICPQIEEKKESN 499
           +K + + +     +++R+K        V+L   ++ Y          WI    E ++  +
Sbjct: 394 LKGLPLKVGLSQPLLKRIKAHLQADNQVILFLNRRGYAPALLCHECGWIA---ECQRCDH 450

Query: 500 FRSVVERFNSLHEHFTSS----------------IAIIHGR---------------MSDI 528
           + ++ + +  L  H   S                +++  G                ++ I
Sbjct: 451 YYTLHQNYRQLRCHHCDSQRPVPQQCPKCGSTHLVSVGVGTEQLENELAPLFPDTPITRI 510

Query: 529 DKESV---------MDSFKNGTCKLLIATTVIEVGIDVVDASIIII------------EN 567
           D+++          +     G  ++LI T ++  G    D +++ +             +
Sbjct: 511 DRDTTSRKGSLEQHLADVHQGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSADFRS 570

Query: 568 AEHFGLAQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV-LKNTEDGFLIAEEDL 625
           AE F  AQL+ Q+ GR GR  +    IL  H P     +  L + L+   D F  A++ L
Sbjct: 571 AERF--AQLYTQVSGRAGRAGKQGEVILQTHHP----EHPLLQILLQQGYDAF--AKQAL 622

Query: 626 KQRKEGEILGIKQSGMPKF---LIAQPELHD------------SLLEIA--RKDAKHILT 668
            +RK           +P +   +I + E HD            +LLE +  + DA  I+ 
Sbjct: 623 AERKS--------VFLPPYTSHIIVRSEDHDNQQSALFLQQLRNLLETSPLKDDALWIMG 674

Query: 669 QDPDLTSVRGQSIRILLYL 687
             P L + RG   R  L L
Sbjct: 675 PVPALQAKRGGRFRWQLLL 693


>gi|258653503|ref|YP_003202659.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258556728|gb|ACV79670.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
           44233]
          Length = 607

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 163/371 (43%), Gaps = 52/371 (14%)

Query: 250 EIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E+G+P  +      + ++++ F +PT  Q +AI  +L        +  + Q   G+GKT 
Sbjct: 31  ELGLPGTL-----LRAVKDLGFATPTAIQAAAIPALLAGRD----ITGVAQ--TGTGKTA 79

Query: 309 VALIAMAAAVEA--GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII----TGNMPQA 362
              + + AA++   G QA+++ P   LA Q  + I  +      +  I     TG +PQ 
Sbjct: 80  AFGLPLLAAIDPTPGVQALVLCPTRELAVQVADAISSFATALPDVSVIAIYGGTGFLPQ- 138

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK- 413
             R AL       A +++GT     D ++   L        +L   DE  R G  + +  
Sbjct: 139 --RAAL----RAGAQVVVGTPGRIIDHLERGTLDLSGLRFLVLDEADEMLRMGFAEDVDR 192

Query: 414 -LTQKATAPHVLLMTAT--PIPRTLV---LTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
            L+    +    L +AT  P  R++    +T+  DI +S+ +      + I  V+   ++
Sbjct: 193 ILSDAPNSRQAALFSATMPPAIRSIAAKHMTNPVDIAVSRQSSTVDSVRQIYAVVPFRDK 252

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           +D +   L+V  +EG  A     + +E  +     ++ R          S A+++G +  
Sbjct: 253 VDALTRFLQV--TEGDAAIVFV-RTKEACDQVGTDLLAR--------GVSAAVMNGDVPQ 301

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            ++E +++  ++G   +L+AT V   G+DV    +++  +A     A +H++ GR GR  
Sbjct: 302 KEREKIIERLRDGRLDVLVATDVAARGLDVDRIDLVVNFDAPGEPEAYVHRI-GRTGRAG 360

Query: 588 EISSCILLYHP 598
              + +  + P
Sbjct: 361 RTGTALTFFTP 371


>gi|258541735|ref|YP_003187168.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256632813|dbj|BAH98788.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256635870|dbj|BAI01839.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256638925|dbj|BAI04887.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256641979|dbj|BAI07934.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645034|dbj|BAI10982.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648089|dbj|BAI14030.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256651142|dbj|BAI17076.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654133|dbj|BAI20060.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 445

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 150/355 (42%), Gaps = 62/355 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM--------AAAVEAGGQ 323
           +PT  QE +I  +LQ       +L + Q   G+GKT    + +         A      +
Sbjct: 24  TPTPIQERSIPYLLQGRD----LLGLAQ--TGTGKTASFALPILEHLIKNPRANTPKQPR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHGQAH 377
            +++AP   L  Q  +  K Y ++ +    ++ G + Q  + +A+ R       A G+  
Sbjct: 78  VLVLAPTRELVAQISDSFKAYARHMKFTQAVVFGGVGQGRQVEAMRRGVDVLVAAPGRLL 137

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIP 432
            ++G     Q  I    L ++++DE  R     F    R  +T        LL +AT +P
Sbjct: 138 DLMG-----QGFIDLSGLEILVLDEADRMLDMGFVRDIRRIMTFVPEQRQTLLFSAT-MP 191

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKT-VIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           R     S+ D+  S + +      P +  V  P + +D + + +  V   G K   +   
Sbjct: 192 R-----SIEDLAASLLND------PARVEVAPPSSTVDRIQQAVMFVNGAGDKRDALLNM 240

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIA-----------IIHGRMSDIDKESVMDSFKNG 540
           +E  K S  R+VV    +L +H  + +A            IHG  S   +E  M  F++G
Sbjct: 241 VESPKVS--RAVV---FTLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGFRSG 295

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL--RGRVGR-GEEISSC 592
           + K+L+AT +   GIDV D S +   +  +   + +H++    R GR G  +S C
Sbjct: 296 SVKVLVATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSFC 350


>gi|254706759|ref|ZP_05168587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
          Length = 535

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 128/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 162 RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 217

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 218 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 269

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 270 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 317

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 318 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 377

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV  +S ++  +        +H++ GR GR     + I LY P
Sbjct: 378 DGTLRILVATDIAARGIDVPGSSHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|300727088|ref|ZP_07060507.1| ATP-dependent RNA helicase [Prevotella bryantii B14]
 gi|299775632|gb|EFI72223.1| ATP-dependent RNA helicase [Prevotella bryantii B14]
          Length = 448

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 143/361 (39%), Gaps = 54/361 (14%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q+I+  +  +P   QE +I  +L         + IL    GSGKTL  L+ +   V    
Sbjct: 4   QEIINKLGITPNAMQEESIDAVLHHRDN----ITILS-PTGSGKTLAYLLPLTQLVSEDC 58

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              QAVI+ P   LA Q    +       + +   + G  P     + + ++   Q  I+
Sbjct: 59  NEVQAVIIVPGRELALQSSTVLNNMKCGLRSMA--VYGGRPTMDEHRMMRKV---QPQIL 113

Query: 380 IGTHALFQDSIQYYKLI-----LVIVDEQHR---FGVQQRL-----KLTQKATAPHVLLM 426
            GT     D +     +      +I+DE  +    G  + +     KL +KA     +L+
Sbjct: 114 FGTPGRLNDHLDKGNFLSDTVKFIIIDEFDKCLEMGFHEEMQNLISKLPEKARQ---ILL 170

Query: 427 TATPIPRT----LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +ATP        ++ T    ++  +  E+   R  I  V  P     + ++ L  +LS  
Sbjct: 171 SATPAEEMREQHIINTRFKTLNYLQDEEQVPARVRIYKVDSPEK---DKLQTLAYLLSSF 227

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           K    I          N+R  VER     +    S +  HG +    +E+ +  F NG+ 
Sbjct: 228 KGKSTIVFL-------NYRDSVERTVKYLQEQGFSTSFFHGGLEQKQREAALYKFSNGSV 280

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVGRGEEISSCILLYH 597
            +L+AT +   G+D+ +     I+N  H+ + +     +H++ GR  R E       L  
Sbjct: 281 NILVATDLASRGLDIPN-----IDNIVHYHIPESEDGYIHRV-GRTARWEAKGKAFFLLG 334

Query: 598 P 598
           P
Sbjct: 335 P 335


>gi|242784404|ref|XP_002480380.1| ATP dependent RNA helicase (Dbp8), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218720527|gb|EED19946.1| ATP dependent RNA helicase (Dbp8), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 538

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 138/371 (37%), Gaps = 83/371 (22%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAP 329
           PT  Q+S I +ILQ          I     GSGKT+   V ++   A    G  AV++ P
Sbjct: 131 PTAIQKSCIPEILQGKDC------IGGSRTGSGKTIAFAVPILQKWAEDPFGIFAVVLTP 184

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQ-AHIIIGTHAL 385
              LA Q +E  K  +    +   +ITG     PQA        IA  Q  H+II T   
Sbjct: 185 TRELALQIFEQFKAISAPQSLKPVLITGGTDMRPQA--------IALSQRPHVIIATPGR 236

Query: 386 FQDSIQYY---------KLILVIVDEQHRF----------GVQQRLKLTQKATAPHVLLM 426
             D I+           ++ ++++DE  R            V+  L     ++    LL 
Sbjct: 237 LADHIRTSGEDTIVGLNRVRMIVMDEADRLLTSGHGSMLPDVETCLSALPPSSERQTLLF 296

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK---------- 476
           TAT  P    L S+          +PA R PI    I    I  +   LK          
Sbjct: 297 TATVTPEVRALKSV---------PRPANRPPIHVTEIGTENIAPIPPTLKQTYLQVPMTH 347

Query: 477 ------VVLS-EG---KKAYWICPQIEEKK--ESNFRSVVERFNSLHEHFTSSIAIIHGR 524
                 V+LS EG   K A   C + +     E   R +  R  SLH     S       
Sbjct: 348 REAFLHVLLSTEGNSSKPAIIFCNRTKTADLLERMLRRLSHRVTSLHSLLPQS------- 400

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
               ++ + +  F+    +LL+AT V   G+D+ + S++I  +        +H++ GR  
Sbjct: 401 ----ERTANLSRFRASAARLLVATDVASRGLDIPNVSLVINFDVPRNPDDYVHRV-GRTA 455

Query: 585 RGEEISSCILL 595
           R       + L
Sbjct: 456 RAGRTGESVTL 466


>gi|118444315|ref|YP_878375.1| ATP-dependent DNA helicase [Clostridium novyi NT]
 gi|118134771|gb|ABK61815.1| ATP-dependent DNA helicase [Clostridium novyi NT]
          Length = 812

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 148/345 (42%), Gaps = 50/345 (14%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           K QE  IK +L      N +L I+    G GK++   I    A+   G  ++++P+  L 
Sbjct: 20  KGQEQVIKSVLDG----NDVLAIMP--TGGGKSICYQIP---ALMMDGLTIVISPLISLM 70

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII-IGTHAL----FQDS 389
           +   + IK    N  +    I  ++      + +E + + +  I+ +    L    F  +
Sbjct: 71  KDQVDSIK----NMGVSCAYINSSLGIYEFNEVIENLKNNKYKILYVAPERLESYEFLSA 126

Query: 390 IQYYKLILVIVDEQH---RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI--D 444
           I+  K+  V +DE H   ++G     +++ +  A  +      PI      T+  ++  D
Sbjct: 127 IKDVKISQVAIDEAHCVSQWG--HDFRVSYRNVAKFIDGFKERPIVTAFTATASNEVRDD 184

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAYWICPQIEEKKESN---F 500
           I  +       K  K  I   +R     E L + ++  G K  ++   IE  KE +   +
Sbjct: 185 IINLLR----LKNPKVFITGFDR-----ENLNITIIKSGSKKAYVLNYIENNKEDSGIIY 235

Query: 501 RSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +  +  ++++++ +    SI   H  +SD +++   + F +   ++++AT    +GID 
Sbjct: 236 AATRKEVDNIYDNLSKKGFSIGRYHAGLSDDERKQNQEDFIHDRVRIMVATNAFGMGIDK 295

Query: 558 VDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHP 598
            +   +I     H+ + +     +Q  GR GR  E S CILL+ P
Sbjct: 296 PNIRYVI-----HYSMPKNIEAYYQEIGRAGRDGEKSECILLFAP 335


>gi|297204692|ref|ZP_06922089.1| DEAD-box RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|297148758|gb|EDY54797.2| DEAD-box RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 486

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 130/316 (41%), Gaps = 29/316 (9%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  +   A+++ P   LAQQ  + +  Y ++ Q+ +
Sbjct: 101 RGRTGSGKTLAFGLALLARTAGQRAEPRQPLALVLVPTRELAQQVTDALTPYARSVQLRL 160

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRFG 407
             + G M    +  AL       A +++ T    +D I     +  ++ + ++DE  +  
Sbjct: 161 ATVVGGMSIGRQANALR----SGAEVVVATPGRLKDLIDRGECRLNQVAITVLDEADQMA 216

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               +    + TA   LL    P  + ++ ++  D ++ ++  +     P+   + P   
Sbjct: 217 ---DMGFMPQVTA---LLDQVRPEGQRMLFSATLDRNVDRLVRRYL-TDPVVHSVDPSAG 269

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIH 522
               +E   V+   G   +W   QI  ++       + +  V+R      +     A +H
Sbjct: 270 AVSTMEH-HVLHVHGADKHWTTTQIAAREGRVIMFLDTKHAVDRLTQDLLNSGVRAAALH 328

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G  S   +   +  FK G   +L+AT V   GI V +  +++  +        LH+  GR
Sbjct: 329 GGKSQPQRTRTLTQFKTGHVTVLVATNVAARGIHVDNLDLVVNVDPPTDHKDYLHR-GGR 387

Query: 583 VGRGEEISSCILLYHP 598
             R  E  S + L  P
Sbjct: 388 TARAGESGSVVTLVTP 403


>gi|217976419|ref|YP_002360566.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
 gi|217501795|gb|ACK49204.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
          Length = 505

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 153/359 (42%), Gaps = 54/359 (15%)

Query: 297 ILQGDVGSGKTLVALIAMA---------AAVEAGGQAVIMAPIGILA---QQHYEFIKKY 344
           ++    GSGKT+   +A+A                 A+I+ P   LA   Q+  E++  Y
Sbjct: 40  LVSAQTGSGKTVAYGLAIAEDLFAGAPALGAAGEPLALIITPTRELALQVQRELEWLYHY 99

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VI 399
                 ++  + G  P+  RR     +A G AHI++GT    +D I+   LI+     V+
Sbjct: 100 AGAR--VISCVGGMEPRRERRD----LAAG-AHIVVGTPGRLRDHIERGALIVSRLKAVV 152

Query: 400 VDEQHR---FGVQQRLKLTQKATAPH--VLLMTATPIPR---TLVLTSLGDIDISKITEK 451
           +DE       G ++ L+   + T P    LL +AT +P+   TL      +    ++  K
Sbjct: 153 LDEADEMLDLGFREDLEFILETTPPERRTLLFSAT-LPKGIATLAKRFQKNALRIEVAGK 211

Query: 452 PAGRKPI--KTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             G   I  + + +  N I+  V+  L+++   G  A   C         N R  V   +
Sbjct: 212 ERGHADIEYRAMRVAPNEIEHAVVNVLRMIDPPG--AIVFC---------NTREAVRHLH 260

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +       S A++ G +S  ++   + + ++G  ++ +AT V   GID+   +++I  + 
Sbjct: 261 AFLVERGFSAALLSGELSQNERNHALQALRDGRARVCVATDVAARGIDLPGLALVIHADL 320

Query: 569 EHFGLAQLHQLR-GRVGRGEEISSCILLYHPPLSKNSYTRL---SVLKNTEDGFLIAEE 623
            H   A++ Q R GR GR       I+L  P   K    RL   + L+ +  G   AEE
Sbjct: 321 PHD--AEILQHRSGRTGRAGRKGISIILV-PSARKRRAERLLMEAGLQPSWSGPPTAEE 376


>gi|118366889|ref|XP_001016660.1| P68-like protein, putative [Tetrahymena thermophila]
 gi|89298427|gb|EAR96415.1| P68-like protein, putative [Tetrahymena thermophila SB210]
          Length = 699

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 129/323 (39%), Gaps = 68/323 (21%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     + A        G  A+++AP   LA Q  E   K+    +I   
Sbjct: 259 TGSGKTLSFMLPALVHINAQDPVKPGEGPIALVLAPTRELANQIQEQCFKFGSKCKISSV 318

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF-- 406
            + G  P+ ++ K L         I+I T       L  + I   ++  +++DE  R   
Sbjct: 319 CVYGGAPKIYQEKEL----RNGCDIVIATPGRLIDFLESNVIDLKRVTYLVLDEADRMLD 374

Query: 407 -GVQQRL-KLTQKATAPHVLLMTATPIPRTL------------VLTSLGDI------DIS 446
            G +  + K+  +       LM +   P+T+            +   +GD+      DI 
Sbjct: 375 MGFEPSIRKIVGQIRPDRQTLMFSATWPQTVRRLALDFCHGDPIHIQIGDMENNVNNDID 434

Query: 447 K---ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK-KESNFRS 502
           +   I +K      +K ++  + R D+ I     + ++ KK    C  + +  +  N R+
Sbjct: 435 QQVEIIDKSQKYDRVKEILSTMTRSDKTI-----IFTQTKKD---CDDLSKALQTDNIRN 486

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +                 IHG  S  D++ VMD FK G    LIAT V   G+DV D  +
Sbjct: 487 IC----------------IHGDKSQRDRDKVMDLFKTGRVNTLIATDVASRGLDVKDIKL 530

Query: 563 IIIENAEHFGLAQLHQLRGRVGR 585
           +I  +        +H++ GR GR
Sbjct: 531 VINYDFPKQIEDYVHRV-GRTGR 552


>gi|317494076|ref|ZP_07952492.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917849|gb|EFV39192.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 459

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 143/312 (45%), Gaps = 41/312 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           S T  Q +A+  IL+      R +R  Q   GSGKT    + L+      +   QA+++ 
Sbjct: 25  SMTPVQAAALPAILE-----GRDVRA-QAKTGSGKTAAFGIGLLQQIDVTQFTTQALVLC 78

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q       + ++TQN +I+   + G  P +H+   L+ + H   HI++GT   
Sbjct: 79  PTRELADQVSKELRRLARFTQNIKILT--LCGGQPISHQ---LDSLVHA-PHIVVGTPGR 132

Query: 386 FQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTS 439
            Q+     S+    + ++++DE  R      L +        V+  + TP  R TL+ ++
Sbjct: 133 IQEHLRKKSVSLDAMKVLVLDEADRM-----LDMGFADAIDDVI--SYTPTARQTLLFSA 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I +I+ +   R+P+      ++ + + IE+     S G+K   +   +   + ++
Sbjct: 186 TYPQGIERISAR-VQREPVTIETGDVSALPD-IEQQFYETSRGEKLLLLQALLSNLQPAS 243

Query: 500 F-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R   + +++L     S +A+ HG +   +++ V+  F N +C++L+AT V  
Sbjct: 244 CVVFCNTKRDCQDVYDALSGQDISVLAL-HGDLEQRERDQVLVRFSNRSCRVLVATDVAA 302

Query: 553 VGIDVVDASIII 564
            G+D+ +  +++
Sbjct: 303 RGLDIKELEMVV 314


>gi|189203493|ref|XP_001938082.1| ATP-dependent RNA helicase eIF4A [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|330914916|ref|XP_003296835.1| hypothetical protein PTT_07032 [Pyrenophora teres f. teres 0-1]
 gi|187985181|gb|EDU50669.1| ATP-dependent RNA helicase eIF4A [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|311330840|gb|EFQ95065.1| hypothetical protein PTT_07032 [Pyrenophora teres f. teres 0-1]
          Length = 396

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 147/364 (40%), Gaps = 89/364 (24%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR------------------------ 296
           +A K L ++P    +S    I D   +M+ K  +LR                        
Sbjct: 1   MADKGLEDVPEGQIESNYDEITDSFDNMNLKAELLRGVYAYGFERPSAIQQRAIMPVIKG 60

Query: 297 ---ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              I Q   G+GKT    I+    +++     QA+I+AP   LAQQ  + +        I
Sbjct: 61  NDVIAQAQSGTGKTATFSISTLQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFMDI 120

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDE 402
                 G        KAL+        +++GT     D IQ   L        +L   DE
Sbjct: 121 QCHACIGGTSVRDDMKALQ----DGPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADE 176

Query: 403 QHRFGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
               G  +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P+
Sbjct: 177 MLSRGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPV 222

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE------------- 505
           + ++    + DE+         EG K ++I  + E+ K      + E             
Sbjct: 223 RILV----KKDELT-------LEGIKQFYIAVEKEDWKLDTLSDLYETVTITQAVIFCNT 271

Query: 506 --RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             + + L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   
Sbjct: 272 RRKVDWLTDKLTARDFTVSAMHGDMDQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQV 331

Query: 561 SIII 564
           S++I
Sbjct: 332 SLVI 335


>gi|78063799|ref|YP_373707.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. 383]
 gi|77971684|gb|ABB13063.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. 383]
          Length = 465

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 138/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+I+ P   LA Q  + +++  +  + + V
Sbjct: 48  IAQAKTGSGKTAAFSLALLARLDARRFDVQAMILCPTRELADQVTQEVRRLARAEENVKV 107

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHI++GT     D +    L L     +++DE  R  
Sbjct: 108 LTLCGGTPMRPQTQSLE---HG-AHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRM- 162

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               L +        V  M  T   +TL+ ++     I+K++++   R P K V +    
Sbjct: 163 ----LDMGFFDDIAKVARMCPT-TRQTLLFSATYPDGIAKLSQQFL-RNP-KEVKLAERH 215

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 216 DDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 275

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 276 -HGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI- 333

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 334 GRTGRADQ 341


>gi|332662377|ref|YP_004445165.1| primosomal protein N' [Haliscomenobacter hydrossis DSM 1100]
 gi|332331191|gb|AEE48292.1| primosomal protein N' [Haliscomenobacter hydrossis DSM 1100]
          Length = 823

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/413 (20%), Positives = 159/413 (38%), Gaps = 98/413 (23%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           +  QE AI +I     +KN +L  LQG  GSGKT V +  +  A+  G Q + + P   L
Sbjct: 289 SAQQERAIAEIHTQFEEKNVIL--LQGVTGSGKTRVYVELIREAMRRGEQVLYLLPEIAL 346

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             Q  E +++   +    V++    +    R +   R   G+A ++    ALF   + + 
Sbjct: 347 TTQIIERLQRVFGDQ---VDVYHSRLNNNERVEIWNRAKEGKALVLGARSALF---LPFR 400

Query: 394 KLILVIVDEQHRFGVQQR------------LKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            L LVI+DE+H    +Q+            + L Q   A  VLL TATP   +   T +G
Sbjct: 401 NLKLVIIDEEHDPSFKQQDPNPRYHGRDAGIYLAQLFGA-KVLLGTATPSVESFYNTQVG 459

Query: 442 DIDISKITEKPAG-----------RKPIKT-------VIIPINRIDEVIER-LKVVLSEG 482
              + ++ E+  G           +K ++         +  +N +   +ER  +V+L + 
Sbjct: 460 KYGLVRMPERFGGLELPEVEIVDLKKALRAGSMQSHFSVTLLNEMKATLERGEQVILFQN 519

Query: 483 KKAY----------WICPQIE-------EKKESNFRS---------------------VV 504
           ++ Y          W C  I         K ++N +                      +V
Sbjct: 520 RRGYAPVYKCSTCNWTCECIHCDVSLTYHKGQNNLKCHYCGYQTQLPKACPACGGKQLIV 579

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESV---------MDSFKNGTCKLLIATTVIEVGI 555
           + F +        I +   ++  +D ++V         ++ F+ G   +L+ T ++  G+
Sbjct: 580 QGFGTEKVEDELKIFLPDAKIGRMDLDTVRSKNAHTKIINDFEEGRINVLVGTQMVTKGL 639

Query: 556 DVVDASIIIIENAEHF-----------GLAQLHQLRGRVGRGEEISSCILLYH 597
           D     ++ + +A+                 + Q+ GR GR  +    I+  H
Sbjct: 640 DFEKVGLVGVLSADQLLQFPDFRAGERAFQLMLQVAGRAGRKHKRGKVIIQSH 692


>gi|322373643|ref|ZP_08048179.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
 gi|321278685|gb|EFX55754.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
          Length = 447

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 138/319 (43%), Gaps = 39/319 (12%)

Query: 302 VGSGKTLVALIAMAAAV--EAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +   +  E+G  Q VI AP   LA Q Y+  K+  +++   + ++   
Sbjct: 47  TGSGKTHTFLLPIFEKLSPESGDVQVVITAPSRELATQIYQATKQIAKHSATEIRVVN-Y 105

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLK 413
           +    +++ +E++   Q HI+IGT     D I+   L +      +VDE         L 
Sbjct: 106 VGGTDKQRQIEKLKVAQPHIVIGTPGRIYDLIKSGDLAIHKAHTFVVDEADMTMDMGFLD 165

Query: 414 LTQKATAP-----HVLLMTATPIPRTL---VLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
              K  A       +L+ +AT IP+ L   +   L +  + +I         I   ++  
Sbjct: 166 TVDKIAASLPKEVQILVFSAT-IPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVST 224

Query: 466 ---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IA 519
              N+ ++++E LK     G + Y             F +  ER + LH +  S+   +A
Sbjct: 225 KGRNKNEQILEMLK-----GMQPYLAMI---------FVNTKERADDLHSYLVSNGLKVA 270

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG +   +++ +M+  K    + ++AT +   GID+   S +I +         +H++
Sbjct: 271 KIHGGIPPRERKRIMNQVKKLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV 330

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR     + I LY P
Sbjct: 331 -GRTGRNGLSGTAITLYQP 348


>gi|302335522|ref|YP_003800729.1| exonuclease RecJ [Olsenella uli DSM 7084]
 gi|301319362|gb|ADK67849.1| exonuclease RecJ [Olsenella uli DSM 7084]
          Length = 1117

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/339 (20%), Positives = 141/339 (41%), Gaps = 38/339 (11%)

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-AMAAAVEAGGQAVIMAPI-GILAQQH 337
           A ++ L  ++    +L ++    G GK+L+  I A   A+  G  +V + P+  ++A Q 
Sbjct: 641 AQREALDRLAAGKSVLCVMA--TGRGKSLIFHIHAAREAIGRGRASVFVYPLRALVADQS 698

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY---- 393
           Y     + +   + V ++TG  P   R  +   +A G   +++ T        + +    
Sbjct: 699 YHLAGSFGR-LGMSVRVLTGETPLDERDDSFADLALGSVDVLLTTPEFLAIHAERFASSG 757

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           ++  V+VDE H  GV +    +     P VL     P+           + ++   E+  
Sbjct: 758 RVGFVVVDEAHHAGVAKGGSRSSYTALPRVLERLGGPVA----------LAVTATAEEGV 807

Query: 454 GRKPIKTVIIPINRIDEVI------ERLKVVLSEG---KKAYWICPQIEEKKESNFRSVV 504
            R+  +  ++ IN  D V+      E L VV   G   ++A  +       K   + +  
Sbjct: 808 AREICR--LLSINADDGVVVDRSVRENLHVVDYRGLHDREAALVSVVATGMKTVVYVNSR 865

Query: 505 ERFNSLHE-------HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           ER  SL              IA  +  ++  D+  V  +F++G    +++T+    G+++
Sbjct: 866 ERSVSLARMLRKNVPELGQRIAFYNAGLTREDRFRVEAAFRDGRLSCIVSTSAFGEGVNL 925

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            D   +++ +   FG  + +Q+ GR GR  + +   LL+
Sbjct: 926 PDIRNVVLYHMP-FGSIEFNQMSGRAGRDGDDAWVYLLF 963


>gi|29840673|ref|NP_829779.1| SNF2 family helicase [Chlamydophila caviae GPIC]
 gi|29835023|gb|AAP05657.1| helicase, Snf2 family [Chlamydophila caviae GPIC]
          Length = 1166

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 18/148 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAA-VEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL A+IA+  + +E G G ++I+ P  ++     EF K   +   +IV+ 
Sbjct: 724 ILADDMGLGKTLQAIIAITQSRLEKGKGCSLIVCPTSLVYNWKEEFRKFNPEFKTMIVDG 783

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL---VIVDEQHRFGVQQR 411
           I      +HRR+ L   A  +  + I ++ L Q  I  YK  +   V++DE H   ++ R
Sbjct: 784 IP-----SHRRRQL--AALSEYDVAITSYNLLQKDIDTYKDFVFDYVVLDEAHH--IKNR 834

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL 435
                K+     + H L++T TPI  +L
Sbjct: 835 TTRNAKSVKMIRSGHRLILTGTPIENSL 862


>gi|261333672|emb|CBH16667.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 616

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/338 (19%), Positives = 137/338 (40%), Gaps = 65/338 (19%)

Query: 302 VGSGKTLVALIAM--------------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
            GSGKT   LI                +    +  QA+I+AP   L+ Q Y   +K+T +
Sbjct: 161 TGSGKTASYLIPAINEILLNISNRPPYSPGSHSSPQALILAPTRELSLQIYGEARKFTYH 220

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDE 402
           T +   ++ G     H+   L R       +++ T     D      +++ ++  +I+DE
Sbjct: 221 TPVRCVVVYGGADPRHQVHELSR----GCKLLVATPGRLMDMFSRGYVRFSEIRFLILDE 276

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATP---IPR-----TLVLTSLGDIDISKITEKPAG 454
             R        +      P + ++   P   +PR     TL+ ++   ++I ++  +   
Sbjct: 277 ADR--------MLDMGFEPQIRMIVQGPDSDMPRAGQRQTLLYSATFPVEIQRLAREFMC 328

Query: 455 RKPIKTVIIPINRIDEVIERLK---------------VVLSEGKKAYWICPQIEEKKESN 499
           R       + + R+    E +                + L    +   +   +E+K++++
Sbjct: 329 RH----SFLQVGRVGSTTENITQDVRWIEDPDKRQALLTLLRENEGKLVLVFVEKKRDAD 384

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           +   +ERF    E    SI   HG     ++E  +  FK+G C++L+AT V   G+D+ +
Sbjct: 385 Y---LERFLRNSELACVSI---HGDRVQREREEALRLFKSGACQVLVATDVASRGLDIPN 438

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             ++I  +        +H++ GR GR  ++   I  ++
Sbjct: 439 VGVVIQYDMPSNIDDYVHRI-GRTGRAGKVGVAISFFN 475


>gi|195169451|ref|XP_002025535.1| GL15249 [Drosophila persimilis]
 gi|194109014|gb|EDW31057.1| GL15249 [Drosophila persimilis]
          Length = 688

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG  +  +++SV+  F+NG   +LIAT V   G+DV D   +I  +  +     +H++ 
Sbjct: 270 IHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRI- 328

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           GR GR +++ +    + P  +K +   +SVL+
Sbjct: 329 GRTGRCQQLGTAYTFFTPDNAKQARELISVLE 360


>gi|153212167|ref|ZP_01947962.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae 1587]
 gi|124116719|gb|EAY35539.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae 1587]
          Length = 406

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 119/278 (42%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  + +        +    + G
Sbjct: 44  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSDVLTHVGTPLGLNTLCLCG 103

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +A ++ AL        +I++ T      L Q  +   ++  +++DE  R        
Sbjct: 104 GVDKAEQQNALAE----NPNILVATTGRLFDLTQSGLSLNRVTTLVLDEADR-------- 151

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 152 LLDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAV 211

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSSIAI---IHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +  +   +HG  S
Sbjct: 212 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLKKAGVVATALHGDKS 271

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             ++E+ +  FKNG+ ++LIAT ++  GI +    ++I
Sbjct: 272 QSEREAALAEFKNGSTQVLIATDLLARGIHIEQLPVVI 309


>gi|116628137|ref|YP_820756.1| primosome assembly protein PriA [Streptococcus thermophilus LMD-9]
 gi|116101414|gb|ABJ66560.1| replication restart DNA helicase PriA [Streptococcus thermophilus
           LMD-9]
          Length = 798

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/400 (20%), Positives = 157/400 (39%), Gaps = 112/400 (28%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   +  G  A+++ P I +  Q    FI ++      +V I+
Sbjct: 285 LLEGVTGSGKTEVYLHLIERTLAMGKTAIVLVPEISLTPQMTNRFISRFGD----LVAIM 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ--DSIQYYKLILVIVDEQH-------- 404
              +    +     ++  GQA +++G   A+F   D+I       +I+DE+H        
Sbjct: 341 HSGLSDGEKFDEWRKVRSGQAKVVVGARSAIFAPLDNIG-----AIIIDEEHEATYKQES 395

Query: 405 --RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP---------- 452
             R+  +    L  K+    ++L +ATP   +      G     K+TE+           
Sbjct: 396 NPRYHARDVALLRSKSHGAILVLGSATPSIESRARAQKGVYHFFKLTERANPSAKIPQVE 455

Query: 453 -------AGRKPIKTVIIPINRIDEVIERL----KVVLSEGKKAYW-------------- 487
                   GR+       P+  ++++ ERL    +VVL   ++ Y               
Sbjct: 456 VVDFKDFVGRQEASDFTPPL--LEKIRERLARKEQVVLLLNRRGYSSFVMCRDCGYVDDC 513

Query: 488 -----------------------------ICPQIEEKKESNFRSVVER-FNSLHEHFTSS 517
                                        +CP  + ++   + +  ++ ++ L E F  +
Sbjct: 514 PNCDISLTLHMDTKTMNCHYCDFQKAIPNVCPNCQSRQIRYYGTGTQKAYDQLTELFPEA 573

Query: 518 IAIIHGRMSDIDK-------ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE- 569
             I   RM D+D        E ++++F +G   +L+ T +I  G+D  + +++ + NA+ 
Sbjct: 574 RVI---RM-DVDTTRKKGAHEKLLETFGSGKADILLGTQMIAKGLDFPNVTLVGVLNADT 629

Query: 570 -----HFGLAQ-----LHQLRGRVGRGEEISSCILLYHPP 599
                 F  A+     L Q+ GR GRG++    I+  + P
Sbjct: 630 SLNLPDFRSAERTFQLLTQVAGRAGRGDKEGEVIIQTYNP 669


>gi|194378748|dbj|BAG63539.1| unnamed protein product [Homo sapiens]
          Length = 657

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK----------- 260
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 125 KSVEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGSNCPPHIENFSD 179

Query: 261 --IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-- 312
             + + I+ NI  +    PT  Q+ AI  I      K  ++   Q   GSGKT   L+  
Sbjct: 180 IDMGEIIMGNIELTRYTRPTPVQKHAIPII----KGKRDLMACAQ--TGSGKTAAFLLPI 233

Query: 313 -----------AMAAAVEAG--GQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
                      A+ A  E G  G+      ++++AP   LA Q YE  +K++  +++   
Sbjct: 234 LSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 293

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 294 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 349

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 350 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 408

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  +D+    L ++ + G  +  +   +E KK ++    +E F   HE +  
Sbjct: 409 NITQKVVWVEDLDKRSFLLDILGATGSDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 461

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 462 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVI 509


>gi|195579332|ref|XP_002079516.1| GD23992 [Drosophila simulans]
 gi|194191525|gb|EDX05101.1| GD23992 [Drosophila simulans]
          Length = 547

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 132/319 (41%), Gaps = 36/319 (11%)

Query: 302 VGSGKTLVALIAMAAAV-------EAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   L+ + + +       E G  QAVI++P   LA Q ++  +K+   T + + 
Sbjct: 177 TGSGKTASFLLPIISKLLDDPQDLEFGRPQAVIVSPTRELAIQIFDEARKFAYETYLKIG 236

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR--- 405
           I+ G     H+   + +     +H++I T     D +      +     V++DE  R   
Sbjct: 237 IVYGGTSFRHQNDCITK----GSHVLIATLGRLLDFVDRTFVTFEDTRFVVLDEADRMLD 292

Query: 406 --FGVQQRLKLTQKATAP-HVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIK 459
             F    R  +T     P H  LM +   P   + L    L +     I         +K
Sbjct: 293 MGFSEGMRKLMTHVTMRPQHQTLMFSATFPEDIQRLAGEFLNNYVFVAIGMVGGACSDVK 352

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
             I  +++ ++  + ++++  E          +E K+ ++F   +  + S  E  T+SI 
Sbjct: 353 QTIYEVSKFNKRAKLMEILREEADGTIVF---VETKRGADF---LASYLSETEFPTTSI- 405

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG      +E  +  FKNG+ K+LIAT+V   G+D+ +   +I  +        +H++
Sbjct: 406 --HGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPKNIDDYVHRI 463

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR          + P
Sbjct: 464 -GRTGRVGNNGRATTFFDP 481


>gi|114630813|ref|XP_507824.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
           troglodytes]
          Length = 737

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 178 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 237

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     +  I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 238 LSVAC-FYGGTSYQSQ----INHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 291

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 292 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 346

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 347 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 400

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 401 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 456

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 457 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 494


>gi|218780681|ref|YP_002431999.1| primosomal protein N' [Desulfatibacillum alkenivorans AK-01]
 gi|218762065|gb|ACL04531.1| primosomal protein N' [Desulfatibacillum alkenivorans AK-01]
          Length = 824

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 8/149 (5%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP- 329
           F+ T  QE A  +I+  + +  + + +L G  GSGKT V L  +  A+E G   +++ P 
Sbjct: 280 FTLTSEQEVAYTEIVGALGRGYKSI-LLHGVTGSGKTEVYLRCVEKALEQGLSVIVLVPE 338

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I +++Q    F+ ++ +     V ++   +    R     RI  GQA I +G  +     
Sbjct: 339 IALISQMQRRFLARFGEK----VAVLHSGLTDGERLDQWMRIVRGQAPIALGARSSIFAP 394

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           ++     LVIVDE+H    +Q  +L  +A
Sbjct: 395 VKNPG--LVIVDEEHDESYKQDSRLRYQA 421


>gi|148701846|gb|EDL33793.1| mCG19408 [Mus musculus]
          Length = 615

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 140 TGSGKTLSYLLPAIVHIIHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKST 199

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 200 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255

Query: 406 FGVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  +  ++G +++S      A
Sbjct: 256 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------A 309

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + +++I  ++ ++SE           +E K   F     R + L 
Sbjct: 310 NHNILQIVDVCHDVEKDEKLILLMEEIMSE-----------KENKTIVFVETKRRCDELT 358

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V+  FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 359 RKMRRDGWPAMGIHGDKSQQERDWVLSEFKHGKASILIATDVASRGLDVEDVKFVINYDY 418

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K +   +SVL+
Sbjct: 419 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQASDLISVLR 461


>gi|332834199|ref|XP_003312636.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
           troglodytes]
          Length = 643

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 178 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 237

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     +  I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 238 LSVAC-FYGGTSYQSQ----INHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 291

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 292 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 346

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 347 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 400

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 401 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 456

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 457 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 494


>gi|313124094|ref|YP_004034353.1| replication restart DNA helicase pria [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280657|gb|ADQ61376.1| Replication restart DNA helicase PriA [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 793

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P      Q +A+  + QD+  +     +L+G  GSGKT V L A++ A+  G  A+++ P
Sbjct: 254 PLDLNDEQAAALSRVSQDIKGRVSQTFLLEGVTGSGKTEVYLQAISQALALGRTALMLVP 313

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            I +  Q   +   ++ Q     V ++   + +  R     RI  GQA +++G  +    
Sbjct: 314 EISLTPQMVKQVQARFGQQ----VAVLHSALSEGERYDEWRRIHRGQAQVVVGARSAVFA 369

Query: 389 SIQYYKLILVIVDEQHRFGVQQ 410
            +    L L+I+DE+H    +Q
Sbjct: 370 PLD--NLGLIIIDEEHEGSYKQ 389


>gi|281358347|ref|ZP_06244829.1| ATP-dependent DNA helicase, RecQ family [Victivallis vadensis ATCC
           BAA-548]
 gi|281315174|gb|EFA99205.1| ATP-dependent DNA helicase, RecQ family [Victivallis vadensis ATCC
           BAA-548]
          Length = 789

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA----QLH 577
           H  M D D+    D F N  C +L AT    +GID  D   +I     HF L       +
Sbjct: 259 HAGMPDADRTEAQDRFMNDPCPVLAATNAFGMGIDRPDVRQVI-----HFNLPGSLEAYY 313

Query: 578 QLRGRVGRGEEISSCILLY 596
           Q  GR GR  E + CILLY
Sbjct: 314 QEAGRAGRDGEAADCILLY 332


>gi|254249351|ref|ZP_04942671.1| Superfamily II DNA and RNA helicase [Burkholderia cenocepacia
           PC184]
 gi|124875852|gb|EAY65842.1| Superfamily II DNA and RNA helicase [Burkholderia cenocepacia
           PC184]
          Length = 436

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 138/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+I+ P   LA Q  + +++  +  + + V
Sbjct: 19  IAQAKTGSGKTAAFSLALLARLDARSFDVQAMILCPTRELADQVAQEVRRLARAEENVKV 78

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHI++GT     D +    L L     +++DE  R  
Sbjct: 79  LTLCGGTPMRPQAQSLE---HG-AHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRM- 133

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               L +        V  M  T   +TL+ ++     I+K++++   R P K + +    
Sbjct: 134 ----LDMGFFDDIAKVARMCPT-TRQTLLFSATYPDGIAKLSQQFL-RNP-KEIKLAERH 186

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 187 DDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 246

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 247 -HGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI- 304

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 305 GRTGRADQ 312


>gi|83944259|ref|ZP_00956714.1| dead-box protein, ATP-independent rna helicase [Sulfitobacter sp.
           EE-36]
 gi|83844803|gb|EAP82685.1| dead-box protein, ATP-independent rna helicase [Sulfitobacter sp.
           EE-36]
          Length = 731

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 133/323 (41%), Gaps = 60/323 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  +         AG   A+I+AP   LA Q    +      
Sbjct: 35  LVSAQTGSGKTVAFGLAIAPTLLGDDEKFGHAGAPLALIIAPTRELAMQVSRELTWLYGK 94

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
              +V    G M     R+AL+R     AHI++ T     D I+   + L     V++DE
Sbjct: 95  AGAVVTTCVGGMDTRTERRALDR----GAHIVVATPGRLCDHIKRNNINLSDIRAVVLDE 150

Query: 403 QHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
                  G ++ L+  L++       LL +AT +P  +         ++K  ++ A R  
Sbjct: 151 ADEMLDLGFREELEFILSEAPEERRTLLFSAT-VPAAIA-------KLAKSYQRDAQR-- 200

Query: 458 IKTV---------------IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           ++TV               + P +  + +I  L+    E K A   C         N R+
Sbjct: 201 VETVGEKKQHADIEYRALNVHPRDTENAIINVLR--FYEAKNAIVFC---------NTRA 249

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            V R  +   +   S+  + G ++  ++ + + + ++G  ++ IAT V   GID+ +  +
Sbjct: 250 AVARLTTRFTNRGFSVVALSGELTQSERTNALQALRDGRARVCIATDVAARGIDLPNLEL 309

Query: 563 IIIENAEHFGLAQLHQLRGRVGR 585
           ++  +        LH+  GR GR
Sbjct: 310 VVHADLPSNSDTLLHR-SGRTGR 331


>gi|330828193|ref|YP_004391145.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565]
 gi|328803329|gb|AEB48528.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565]
          Length = 459

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 133/336 (39%), Gaps = 66/336 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I +   GSGKT    + + A +       QA+++ P   LA Q  + I++  +   N ++
Sbjct: 45  IAKAKTGSGKTAAFGLGLLAKLNVNRLEVQALVLCPTRELADQVAQEIRRLARALPNVKL 104

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR 405
           +   + G  P A +   L   + G AHI +GT       L Q +++   L  +++DE  R
Sbjct: 105 VT--LCGGTPTAPQSATL---SFG-AHIAVGTPGRILKHLEQGTLELSGLKTLVLDEADR 158

Query: 406 ---------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL-----GDIDI 445
                          +  ++R  L   AT P  +   +  + R  V  S+     G    
Sbjct: 159 MLDMGFGEDINRVISYAPERRQTLLFSATYPEGIAQMSRGVQRNPVEVSVESLHEGSAIE 218

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            K+ E PAG+           R+D +               W+    +      F +   
Sbjct: 219 QKLYEVPAGQ-----------RLDALT--------------WLLSHYQPSSCVVFCNTKR 253

Query: 506 RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             N + +H  +   S   ++G +   +++ V+  F NG+  +L+AT V   G+D+ +   
Sbjct: 254 ACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILVATDVAARGLDIKELGA 313

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +I     +     +H++ GR GR  +    + LY P
Sbjct: 314 VINYELTYDPEVHVHRI-GRTGRAGQQGLALSLYQP 348


>gi|255078748|ref|XP_002502954.1| predicted protein [Micromonas sp. RCC299]
 gi|226518220|gb|ACO64212.1| predicted protein [Micromonas sp. RCC299]
          Length = 435

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 129/313 (41%), Gaps = 40/313 (12%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL  L+     + A        G   +I+AP   LA Q  E    + ++++I  
Sbjct: 93  ETGSGKTLAFLLPAVVHINAQPYLERGDGPIVLILAPTRELAVQIQEQAATFGKSSKIKS 152

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G  P+  +  AL         + + T     D     +    ++   ++DE  R  
Sbjct: 153 ACIYGGAPRNAQIAALRE----GVELCVATPGRLLDLLNAKATNLRRVTYFVLDEADRML 208

Query: 406 -FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR--KPIKT 460
             G + +++  ++ T P    LL TAT  P   V  + GD     +T +  G   +    
Sbjct: 209 DLGFEPQIRRVERLTRPDRQTLLFTAT-WP-AEVAAAAGDFTNDVVTVRIGGEALRASDN 266

Query: 461 VIIPINRIDEVIERLKVV------LSEGKKAYWICPQIEEKKESNFR--SVVERFNSLHE 512
           V   +  +DE  +  K+V      L E     W  P++     S  R  S   R    HE
Sbjct: 267 VSQIVEVVDEDDKHAKLVGWLERALGEADAGGWT-PRVIVFLSSKARVDSATRRLR--HE 323

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
            F +    IHG  +  ++E V+  F+ G   +++AT V   G+DV D S++I  +     
Sbjct: 324 GFPA--LSIHGDKTQEEREWVLGEFRAGKSPVMLATDVAARGLDVKDVSLVINYDFPAKM 381

Query: 573 LAQLHQLRGRVGR 585
              +H++ GR GR
Sbjct: 382 EDYVHRI-GRTGR 393


>gi|163853846|ref|YP_001641889.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163665451|gb|ABY32818.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
          Length = 568

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 141/347 (40%), Gaps = 46/347 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A  +              A+++AP   LA Q   E    Y Q
Sbjct: 39  LVSAQTGSGKTVAFGLAIAGTLLGEDETLPPPGAPLALVIAPTRELALQVQRELTWLYAQ 98

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVD 401
               IV  + G  P   RR+A  R      HI++GT    +D ++  +L+      VI+D
Sbjct: 99  TGARIVPCVGGMDP---RREA--RALEAGVHIVVGTPGRLRDHMERGRLVTEGLRAVILD 153

Query: 402 EQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGR 455
           E       G ++ L+    +T      LL +AT +P+ +V L      D  ++      R
Sbjct: 154 EADEMLDMGFREDLEFILASTPKDRRTLLFSAT-LPKAIVALAESYQRDALRLAVAGETR 212

Query: 456 KPIKTV-----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN-S 509
                V     ++P      V+  L+ V  +   A   C         N R  V     S
Sbjct: 213 GHADIVYRAVRVMPREVEHAVVNILRYV--DAPVAIVFC---------NTRDGVRHLQAS 261

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L E   S++A+  G +   ++ + + + ++G  ++ +AT V   GID+    ++I  +  
Sbjct: 262 LTERGFSAVAL-SGELGQGERNAALQALRDGRARVCVATDVAARGIDLPGLDLVIHADLP 320

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           H      H+  GR GR     + ++L  P   + +    ++ K + D
Sbjct: 321 HDAEVMQHR-SGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIAKVSPD 366


>gi|90418841|ref|ZP_01226752.1| primosomal protein N' [Aurantimonas manganoxydans SI85-9A1]
 gi|90336921|gb|EAS50626.1| primosomal protein N' [Aurantimonas manganoxydans SI85-9A1]
          Length = 788

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L+G  GSGKT V   A+AAA+E G Q +I+ P   L Q    FI ++            
Sbjct: 278 LLEGVTGSGKTEVYFEAVAAALEKGRQVLILLPEIALTQ---SFIDRFHARFGSPPAEWH 334

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH 404
            ++P   R K   +IA G+  I+ G   ALF   + +  L L+IVDE+H
Sbjct: 335 SDVPPRQREKVWRQIAEGRVRIVAGARSALF---LPFNDLGLIIVDEEH 380


>gi|224064557|ref|XP_002301515.1| predicted protein [Populus trichocarpa]
 gi|222843241|gb|EEE80788.1| predicted protein [Populus trichocarpa]
          Length = 807

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 135/317 (42%), Gaps = 57/317 (17%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   ++ M   +        E G   V+ AP   LA Q Y   KK++++  I V 
Sbjct: 271 TGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVVCAPTRELAHQIYLETKKFSKSHGIRVS 330

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G M +  + K L+        I+I T     D ++   L +     +++DE  R   
Sbjct: 331 AVYGGMSKLDQFKELK----AGCEIVIATPGRLIDMLKMKALNMSRATYLVLDEADRMFD 386

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKP 457
             F  Q R  + Q       LL +AT +PR +      +LT                  P
Sbjct: 387 LGFEPQIRSIVGQIRPDRQTLLFSAT-MPRKIEKLAREILTD-----------------P 428

Query: 458 IKTVIIPINRIDEVIERL-KVVLSEGKKAYWI---CPQIEEKKE----SNFRSVVERFNS 509
           ++  +  + R +E I ++ +V+ S+ +K  W+    P + ++ +    ++ ++ V+   S
Sbjct: 429 VRVTVGEVGRANEDITQVVQVIPSDAEKLPWLIEKLPGMIDEGDVLVFASKKATVDDIES 488

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD-ASIIIIENA 568
                   +A +HG      +  ++  FK+G   +L+AT V   G+D+    S++  + A
Sbjct: 489 QLAQKAFKVAALHGDKDQASRMEILQKFKSGVYHVLVATDVAARGLDIKSIKSVVNFDIA 548

Query: 569 EHFGLAQLHQLRGRVGR 585
               +  +H++ GR GR
Sbjct: 549 REMDV-HVHRI-GRTGR 563


>gi|170758353|ref|YP_001787402.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405342|gb|ACA53753.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 376

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 150/353 (42%), Gaps = 58/353 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV---IMAP 329
           PT  QE +I      M  KN    I +   G+GKTL  L+ M   +     A+   I+ P
Sbjct: 25  PTPIQEESI------MLIKNGNDVIAEAQTGTGKTLAFLLPMFENISPNINAIQGLIITP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA----- 384
              LA Q  E   K  +   + +    G      + K L+       H++I T       
Sbjct: 79  TRELAIQITEEAMKLKKAKDLNILAAYGGKDIGSQIKKLK----NNIHLVIATPGRLLDH 134

Query: 385 LFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSL 440
           L ++++ +  L  +++DE       G +  ++           ++  TP  R TL  ++ 
Sbjct: 135 LNRNTLNFKDLKTLVLDEADEMLLMGFKNEVRS----------IIENTPRKRQTLCFSAT 184

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL---SEGKKAYWICPQIEEKKE 497
            + ++ K+  K   R P K +II    +   ++ +K VL   ++ +K   +C  + E  E
Sbjct: 185 MNSEVKKLAYKNM-RDP-KLIIIEKEEV--TLKNIKQVLIETTDRRKQEDLCKILNE--E 238

Query: 498 SNFRSVV-----ERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           + F +++      R ++L E       +   +HG M+   +E +M SFKN   + LIAT 
Sbjct: 239 NPFMAIIFCRTKRRVDNLEEDLYKKGYNCEKLHGSMTQPKRERIMRSFKNLEIQYLIATD 298

Query: 550 VIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           V   G+D+   + +    I EN+E +    +H++ GR GR  E     L   P
Sbjct: 299 VAARGLDITGVTHVFNYDIPENSESY----IHRI-GRTGRAGEKGYTFLFVAP 346


>gi|291530591|emb|CBK96176.1| primosomal protein N' [Eubacterium siraeum 70/3]
          Length = 824

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 14/190 (7%)

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEA 320
             K +R+I       ++SA+   + ++    +    +L+G  GSGKT V L  +  A++ 
Sbjct: 273 GAKAVRSIDDIVLSDEQSAVYSGMSELMDSGKPQCALLKGVTGSGKTTVFLKLIDKALKQ 332

Query: 321 GGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           G  A+++ P I +  Q    F   +  N    V +I  N+    R    +RI  G+A I+
Sbjct: 333 GKTALMLVPEISLTPQMVRNFTDLFGSN----VAVIHSNLSLGQRTDEYKRIEKGEARIV 388

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH--------VLLMTATPI 431
           IGT +     +    +I++  + +H +  ++  +   ++ A          +LL +ATP 
Sbjct: 389 IGTRSAVFAPLDNIGIIVIDEEGEHTYKSEKSPRYQARSIAKQRCFYHNATLLLASATPS 448

Query: 432 PRTLVLTSLG 441
             +    S+G
Sbjct: 449 LESAYFASIG 458


>gi|76584014|gb|ABA53488.1| ATP-independent RNA helicase [Burkholderia pseudomallei 1710b]
          Length = 505

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 136/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + I++  +  + + V
Sbjct: 89  IAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKV 148

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHII+GT     D +    L L     +++DE  R  
Sbjct: 149 LTLCGGTPMRPQTQSLE---HG-AHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRML 204

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K      +     P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 205 DMGFFDDIAK------VARQCPPTRQTLLFSATYPDGIAKLSQQFL-RHP-KRVKLEERH 256

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 257 DDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 316

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 317 -HGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVYVHRI- 374

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 375 GRTGRADQ 382


>gi|15828540|ref|NP_325900.1| ATP-dependent RNA helicase [Mycoplasma pulmonis UAB CTIP]
 gi|14089482|emb|CAC13242.1| ATP-DEPENDENT RNA HELICASE [Mycoplasma pulmonis]
          Length = 480

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 160/368 (43%), Gaps = 50/368 (13%)

Query: 255 INVEGKIAQKILRNIPFS-PTKSQESAI------KDILQDMSQKNRMLRILQGDVGSGKT 307
           +N++ +I  K L  I F  PTK QE+ +      KDI            I Q   G+GKT
Sbjct: 6   MNIKSEIL-KSLDEIGFEKPTKIQEAVLPFAFEGKDI------------IGQAQTGTGKT 52

Query: 308 LVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
               I + + ++      Q +++AP   LA Q Y+ +    + T   + +I G +    +
Sbjct: 53  AAFAIPILSNLDCSINRIQHLVIAPTRELANQIYDQLNILGKYTCSKIALILGGVSYEKQ 112

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           + AL    +   +I++ T    +D +   K+ L  +     F + +  +L +      ++
Sbjct: 113 KAAL----NSGVNIVVATPGRLEDLLAQNKIDLSHI---KTFTLDEADELLKIGFYNEII 165

Query: 425 -LMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            +M   P  R     T+  D    K++++      + ++   +   +++ +   VV+SE 
Sbjct: 166 KIMNKLPKKRQNFFFTATFDEKTKKLSQEITNEAKMISMSSGLETTEKIDQNF-VVVSEE 224

Query: 483 KKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +K   +   ++ KK +         R V E  ++L E   S++ I  G M   D+ SV++
Sbjct: 225 EKLITLVKFLDFKKPTASVIFGRTKRRVDELASALQELGFSAVGI-QGDMVQKDRTSVLN 283

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISS 591
            FK+    +++AT V+  GIDV    ++    + E  E++     H++ GR GRG  I  
Sbjct: 284 RFKDQKVNIIVATDVMARGIDVSHVDLVFNFDLPEEIEYY----THRI-GRTGRGTRIGQ 338

Query: 592 CILLYHPP 599
            I     P
Sbjct: 339 AISFVKKP 346


>gi|328768329|gb|EGF78376.1| eIF4AIII protein [Batrachochytrium dendrobatidis JAM81]
          Length = 445

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 170/400 (42%), Gaps = 67/400 (16%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG-KIAQKILRNIPFS----- 272
           E T  A++  A + L  G+ A+L    +  +++ I  + +   + + +LR I F+     
Sbjct: 7   ERTGSAKKNSAVNRLSDGESAMLF---ETSEDVKIITSFDQMGLKEDLLRGI-FAYNFEK 62

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AI  IL     K R + I Q   G+GKT    I++   ++      QA+I++P
Sbjct: 63  PSAIQQRAIAPIL-----KGRDV-IAQAQSGTGKTATFSISVLQTIDTTRRQTQALILSP 116

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q    +        +      G        + + ++ HGQ H++ GT     D 
Sbjct: 117 TRELATQIQSVVLALGDYMNVQCHACIGGTSIG---EDIRKLDHGQ-HVVSGTPGRVFDM 172

Query: 389 ----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
               ++Q   + ++I+DE       G ++++    +   P   V++++AT     L +TS
Sbjct: 173 IKRRNLQTRDIKMLILDEADEMLSKGFKEQIYDVYRYLPPSTQVVILSATLPHDVLDMTS 232

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                  K    P        V + + R +  +E +K      +K  W    + +  ++ 
Sbjct: 233 -------KFMTDP--------VRVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL 277

Query: 499 ---------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N R  V+           ++A +HG M   +++++M  F++G  ++LI T 
Sbjct: 278 TITQAVIFCNTRRKVDWLTEKMREANFTVAAMHGEMPQKERDAIMQEFRSGASRVLITTD 337

Query: 550 VIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
           V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 338 VWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 372


>gi|256822194|ref|YP_003146157.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795733|gb|ACV26389.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 458

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 144/369 (39%), Gaps = 70/369 (18%)

Query: 263 QKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------A 315
           QK  + + F  P++ QE AI+ IL           ++  + GSGKT   L+ +       
Sbjct: 15  QKAFQKLKFEVPSEVQEKAIEPILDGHDV------MVSAETGSGKTAAFLLPIIHNLLEN 68

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
            +     + +I+AP   LA+Q  +  +  TQ TQI   +I G     ++    + I    
Sbjct: 69  PSRHTSTRVLILAPTRELARQIDKHARDLTQFTQIKTGLIIGGADYKYQ----QAIFRDN 124

Query: 376 AHIIIGT------HALFQ----DSIQYYKLILVIVDEQHRFGVQQRLKLTQK--ATAPHV 423
             III T      H   Q    + ++Y  L++   D+    G    ++       +    
Sbjct: 125 PEIIIATPGRMLEHCEKQGADLNDLEY--LVIDEADKMFEMGFTDDVQAIAGFCKSDRQT 182

Query: 424 LLMTAT--------------PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           LL +AT                P+ +VL S             A    I+  II     D
Sbjct: 183 LLFSATLKTKGIKHLTDYLMDEPQAIVLNSF-----------EAKNDSIEQFIITA---D 228

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
           +++ + K+         W+    E +K     N +  V+R   L  +   +   +HG +S
Sbjct: 229 DLVHKEKLT-------QWLLTNEEYRKAIVFCNTKEQVDRLGGLIRYHKIAAGTLHGDIS 281

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              +  VM  F++   K+LIA+ V   GIDV D  ++I  +  H     +H++ GR  R 
Sbjct: 282 QSVRNHVMTQFRDSKIKVLIASDVAARGIDVKDIDLVINFDMAHNAEDYIHRI-GRTARA 340

Query: 587 EEISSCILL 595
            E    + L
Sbjct: 341 GETGKAVSL 349


>gi|2580554|gb|AAC51831.1| dead box, Y isoform [Homo sapiens]
 gi|2580556|gb|AAC51832.1| dead box, Y isoform [Homo sapiens]
          Length = 660

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 168/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK----------- 260
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 128 KSVEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGSNCPPHIENFSD 182

Query: 261 --IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             + + I+ NI  +    PT  Q+ AI  I      K +   +     GSGKT   L+ +
Sbjct: 183 IDMGEIIMGNIELTRYTRPTPVQKHAIPII------KGKRDLVACAQTGSGKTAAFLLPI 236

Query: 315 AA------------AVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            +            AV+  G+         ++++AP   LA Q YE  +K++  +++   
Sbjct: 237 LSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 296

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 297 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 352

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 353 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 411

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  +D+    L ++ + G  +  +   +E KK ++    +E F   HE +  
Sbjct: 412 NITQKVVWVEDLDKRSFLLDILGATGSDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 464

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 465 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVI 512


>gi|164687595|ref|ZP_02211623.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
           16795]
 gi|164603369|gb|EDQ96834.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
           16795]
          Length = 541

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 143/345 (41%), Gaps = 46/345 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I Q   G+GKT    I +   V+      QA+++ P   LA Q  + I+K  +  + I  
Sbjct: 45  IGQAQTGTGKTAAFSIPILEKVDPNNKHLQAIVLCPTRELAIQVSKEIRKLGKFKSGIKT 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G  P   + KAL+        ++IGT     D I    L L     V++DE     
Sbjct: 105 LPVYGGQPIDRQIKALK----SGVQVVIGTPGRVIDHINRKTLKLDDVKMVVLDEADEML 160

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL--GDIDISKITEKPAGRKPIKT 460
              F     L L Q          +AT     L LT L   + +I K+  K      IK 
Sbjct: 161 DMGFREDIELILNQTPIERQTTFFSATMPKEILELTKLYQHEPEIIKVVRKELTVPNIKQ 220

Query: 461 VIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             I   R +  EV+ RL + +   K +   C        +  R   E  + L      + 
Sbjct: 221 FYIETRRANKLEVLCRL-IDVYNPKLSVVFC--------NTKRGSDELVSELQARGYFAD 271

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLA 574
           A+ HG +    ++ VMD F+ GT  +L+AT V   GIDV D  ++    + ++ E++   
Sbjct: 272 AL-HGDLKQTQRDIVMDKFRQGTIDILVATDVAARGIDVDDVDMVFNYDLPQDEEYY--- 327

Query: 575 QLHQLRGRVGR-GEEISSCILLYHPPLSK----NSYTRLSVLKNT 614
            +H++ GR GR G E  S   +Y   + K      YT+  ++K++
Sbjct: 328 -VHRI-GRTGRAGREGVSFSFVYGKEMRKMRDIERYTKCKLVKHS 370


>gi|154688021|ref|YP_001423182.1| DbpA [Bacillus amyloliquefaciens FZB42]
 gi|154353872|gb|ABS75951.1| DbpA [Bacillus amyloliquefaciens FZB42]
          Length = 479

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 139/341 (40%), Gaps = 34/341 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAP 329
           PT+ Q   I   LQ          +++   GSGKT    + +  +A   E   QA+I+ P
Sbjct: 25  PTEVQRRVIPAALQKKDL------VVKSQTGSGKTAAFGIPICELAEWEENKPQALILTP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I    +  +I    + G      ++  L++    ++H++ GT     D 
Sbjct: 79  TRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQ----KSHVVAGTPGRVLDH 134

Query: 390 IQ-----YYKLILVIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATPIP---RTLVL 437
           I+       +L  V++DE         ++Q   + Q      V ++ +  +P     L  
Sbjct: 135 IEKGTLPLERLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTMLFSATLPDDVEKLSR 194

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           T + D ++ ++  +    K I+  +      D+      V+++E   +  I  + +E+  
Sbjct: 195 TYMKDPELIEVKAEGLTTKDIEHFVTRTEEEDKTSLLRDVLITENPDSCIIFCRTKER-- 252

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                V++  + L +        IHG M   D+  VM+ FK G  + LIAT V   GID+
Sbjct: 253 -----VIQLTDEL-DRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIATDVAARGIDI 306

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            + S++I  +      + +H+  GR GR       I    P
Sbjct: 307 ENISLVINYDIPLEKESYVHRT-GRTGRAGHRGRAITFVTP 346


>gi|261758239|ref|ZP_06001948.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|261738223|gb|EEY26219.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
          Length = 462

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 128/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 89  RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 144

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 145 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 196

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 197 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 244

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 245 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 304

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV  +S ++  +        +H++ GR GR     + I LY P
Sbjct: 305 DGTLRILVATDIAARGIDVPGSSHVVNYDPPDEPETYVHRI-GRTGRNGASGASITLYDP 363


>gi|218134053|ref|ZP_03462857.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991428|gb|EEC57434.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC
           43243]
          Length = 559

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 139/311 (44%), Gaps = 43/311 (13%)

Query: 299 QGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    I M  +++      QAV++ P   LA Q  + I+K  +  + I V  
Sbjct: 69  QAQTGTGKTAAYGIPMLQSIDPKLKCVQAVVLCPTRELAIQVADEIRKLAKYMSSIKVLP 128

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF--- 406
           + G      + K+L+        I++GT     D     ++++ K+ +VI+DE       
Sbjct: 129 VYGGQEIVRQIKSLKT----GVQIVVGTPGRVMDHMRRKTVKFDKVKMVILDEADEMLDM 184

Query: 407 GVQQRLK--LTQKATAPHVLLMTATPIPRTLV---LTSLGDIDISKITEKPAGRKPIKTV 461
           G ++ ++  LTQ       ++ +AT +P+ ++    T   D ++ K+  K    + I+  
Sbjct: 185 GFREDMETILTQMPEERQTVMFSAT-MPKAIMDIARTFQNDAEVIKVVRKELTVENIEQY 243

Query: 462 IIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
              +     DE++ RL + +   K +   C         N +  V+   S  +       
Sbjct: 244 YFEVRSKNKDEILSRL-IDIYNPKLSVVFC---------NTKKQVDDLISELKGRGYFAD 293

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQ 575
            IHG M    ++ VM+ F+ G  ++LIAT V   GIDV D  I+    + ++ E++    
Sbjct: 294 GIHGDMKQAQRDRVMNDFRKGKTEILIATDVAARGIDVDDVDIVFNYDLPQDEEYY---- 349

Query: 576 LHQLRGRVGRG 586
           +H++ GR GR 
Sbjct: 350 VHRI-GRTGRA 359


>gi|156389356|ref|XP_001634957.1| predicted protein [Nematostella vectensis]
 gi|156222046|gb|EDO42894.1| predicted protein [Nematostella vectensis]
          Length = 794

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 149/357 (41%), Gaps = 49/357 (13%)

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           V+ KI   + +N    PT  Q  AI  I   MS ++ M+ I +   GSGKTL  LI M  
Sbjct: 144 VQLKILDVLKKNSYEKPTPIQAQAIPVI---MSGRD-MIGIAK--TGSGKTLAFLIPMFR 197

Query: 317 AV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
            +        E G  A++M P   LA Q +   KK+ +   +    + G    + +   L
Sbjct: 198 HIKDQPPLEREEGPIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQIAEL 257

Query: 369 ERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF---GVQ-QRLKLTQ 416
           +R     A II+ T     D +           +   +++DE  R    G + Q +++  
Sbjct: 258 KR----GAEIIVCTPGRMIDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEPQVMRIID 313

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                   +M +   PR +   +   +D           KPI+  +   + +   +E+  
Sbjct: 314 CIRPDRQTVMFSATFPRQMEALARKILD-----------KPIEIQVGGRSVVCSDVEQNV 362

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSV-VERFNSLHEHF------TSSIAIIHGRMSDID 529
           VV+ E  K   +   +   +E     V VE+ +S    F      +     +HG M   D
Sbjct: 363 VVIEEDDKFLKLLELLGLYQEQGSVLVFVEKQDSADSLFKDLLKRSYPCLSLHGGMDQFD 422

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           ++S +  FKNG  KL+IAT+V   G+DV   ++++  +  +     +H++ GR GR 
Sbjct: 423 RDSTIADFKNGVTKLMIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRV-GRTGRA 478


>gi|297741568|emb|CBI32700.3| unnamed protein product [Vitis vinifera]
          Length = 523

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 139/318 (43%), Gaps = 43/318 (13%)

Query: 302 VGSGKTLV----ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            GSGKTL      L+ +  A + G +AVI+ P   LA Q     KK  +  +  ++++T 
Sbjct: 173 TGSGKTLAFVCPMLMKLKHASKDGIRAVILCPTRELAAQTARESKKLAKGKKFYIKLLTK 232

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ 409
            + ++        I+     I+I T    + +I+  KL L     +++DE  +    G+ 
Sbjct: 233 ELLRSGD------ISKLPCDILISTPLRLRSAIRKKKLDLSRVEYLVLDESDKLFELGLV 286

Query: 410 QRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDI--DISKITEKPAGRKPIKTVIIPIN 466
           +++    KA + P ++        R+L   +L D   ++++     A    ++ +I   N
Sbjct: 287 KQIDAVVKACSNPSII--------RSLFSATLPDFVEELARTIMHDA----VRVIIGRKN 334

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-----FRSVVERFNSLHEHFTSS---I 518
              E+I++ K+V +  ++   +  +    +  N     F    ER   L+         +
Sbjct: 335 SASELIKQ-KLVFAGSEEGKLLALRQSFAESLNPPILLFVQSKERAKELYTELAFDDIRV 393

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            +IH  +S   +E+ +D F+ G   +LIAT VI  G+D    + +I  +      A +H+
Sbjct: 394 DVIHADLSQSQRENAVDDFRAGKTWVLIATDVIARGMDFKGINCVINYDFPDSPAAYIHR 453

Query: 579 LRGRVGRGEEISSCILLY 596
           + GR GR       I +Y
Sbjct: 454 I-GRSGRAGRTGEAITIY 470


>gi|167576699|ref|ZP_02369573.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis TXDOH]
          Length = 465

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 136/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + +++  +  + + V
Sbjct: 49  IAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQVAQEVRRLARAEENVKV 108

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHII+GT     D +    L L     +++DE  R  
Sbjct: 109 LTLCGGTPMRPQTQSLE---HG-AHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRML 164

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K            P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 165 DMGFFDDIAKVA------RLCPPTRQTLLFSATYPDGIAKLSQQFL-RNP-KEVKLEERH 216

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   ++  +        +  +   +  + LH     ++A+
Sbjct: 217 DDSKIRQRFYEVTEDERLHAVGLLLKHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 276

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 277 -HGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI- 334

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 335 GRTGRADQ 342


>gi|164424264|ref|XP_958421.2| eIF4A [Neurospora crassa OR74A]
 gi|161789047|sp|Q7RV88|IF4A_NEUCR RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|157070442|gb|EAA29185.2| eIF4A [Neurospora crassa OR74A]
          Length = 397

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 132/299 (44%), Gaps = 58/299 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +        I   
Sbjct: 65  IAQAQSGTGKTATFSISVLQKIDPSLKACQALILAPTRELAQQIQKVVVAIGDFMNIECH 124

Query: 354 IITGNMPQAHRRKALERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
              G        KAL+          G+ H +I    L  DS++ +  +L   DE    G
Sbjct: 125 ACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDSMKMF--VLDEADEMLSRG 182

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             +++    +L  ++T   V+L++AT +P+          D+ ++T K   R+P++ ++ 
Sbjct: 183 FTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-REPVRILV- 227

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------RFN 508
              + DE+         EG K ++I  + EE K      + E               + +
Sbjct: 228 ---KKDELT-------LEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVD 277

Query: 509 SLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 278 WLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 336


>gi|13514809|ref|NP_004651.2| ATP-dependent RNA helicase DDX3Y [Homo sapiens]
 gi|169881239|ref|NP_001116137.1| ATP-dependent RNA helicase DDX3Y [Homo sapiens]
 gi|73620957|sp|O15523|DDX3Y_HUMAN RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|23273291|gb|AAH34942.1| DDX3Y protein [Homo sapiens]
 gi|119612016|gb|EAW91610.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Homo sapiens]
 gi|119612017|gb|EAW91611.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Homo sapiens]
          Length = 660

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 169/408 (41%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK----------- 260
           K+ + +W+ P    ERL  +    G   +      F+K   IP+   G            
Sbjct: 128 KSVEDDWSKPLPPSERLEQELFSGGNTGI-----NFEKYDDIPVEATGSNCPPHIENFSD 182

Query: 261 --IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             + + I+ NI  +    PT  Q+ AI  I      K  ++   Q   GSGKT   L+ +
Sbjct: 183 IDMGEIIMGNIELTRYTRPTPVQKHAIPII----KGKRDLMACAQ--TGSGKTAAFLLPI 236

Query: 315 AA------------AVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            +            AV+  G+         ++++AP   LA Q YE  +K++  +++   
Sbjct: 237 LSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 296

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 297 VVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 352

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 353 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 411

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  +D+    L ++ + G  +  +   +E KK ++    +E F   HE +  
Sbjct: 412 NITQKVVWVEDLDKRSFLLDILGATGSDSLTLV-FVETKKGAD---SLEDF-LYHEGY-- 464

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 465 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVI 512


>gi|89096784|ref|ZP_01169676.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. NRRL B-14911]
 gi|89088799|gb|EAR67908.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. NRRL B-14911]
          Length = 480

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 134/320 (41%), Gaps = 34/320 (10%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + +  M    E   QA+I+ P   LA Q  E I    +  +I   
Sbjct: 44  VVKAQTGSGKTASFGIPVCDMVEWEEKSPQALILTPTRELAVQVREDITNIGRFKRIKAV 103

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQ----H 404
            + G  P   +++ L++    + H+++GT     D I    L+L     +I+DE     +
Sbjct: 104 AVYGKEPFTKQKEELKQ----KTHVVVGTPGRVMDHIDRETLVLDRIQYLIIDEADEMLN 159

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           R  + +   + ++  +  V ++ +  +P+          D+  +  +   + P+   I  
Sbjct: 160 RGFIDEVEAIIKELPSDRVTMVFSATLPK----------DVEALCHEYM-KDPVHVEIES 208

Query: 465 INRIDEVIERLKV-VLSEGKKAYWICPQIEEKKESN--FRSVVERFNSLHEHFTS---SI 518
                E IE L + V  E K +      + E  +S   F    E  ++++        S 
Sbjct: 209 TGVTAETIEHLLMEVKQEDKISLLKDITVTENPDSCLIFCRTKEHVDTVYTELDGAGYSS 268

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG +   D+ +VM+ FK G  + L+AT V   GID+ + S++I  +      + +H+
Sbjct: 269 ERLHGGLEQEDRFAVMEGFKMGNYRYLVATDVAARGIDIDNVSLVINYDVPMEKESYVHR 328

Query: 579 LRGRVGRGEEISSCILLYHP 598
             GR GR       I    P
Sbjct: 329 T-GRTGRAGNKGKAITFATP 347


>gi|240141300|ref|YP_002965780.1| putative ATP-independent RNA helicase, DEAD/DEAH-box family protein
           [Methylobacterium extorquens AM1]
 gi|240011277|gb|ACS42503.1| putative ATP-independent RNA helicase, DEAD/DEAH-box family protein
           [Methylobacterium extorquens AM1]
          Length = 568

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 141/347 (40%), Gaps = 46/347 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A  +              A+++AP   LA Q   E    Y Q
Sbjct: 39  LVSAQTGSGKTVAFGLAIAGTLLGEDETLPPPGAPLALVIAPTRELALQVQRELTWLYAQ 98

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVD 401
               IV  + G  P   RR+A  R      HI++GT    +D ++  +L+      VI+D
Sbjct: 99  TGARIVPCVGGMDP---RREA--RALEAGVHIVVGTPGRLRDHMERGRLVTEGLRAVILD 153

Query: 402 EQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGR 455
           E       G ++ L+    +T      LL +AT +P+ +V L      D  ++      R
Sbjct: 154 EADEMLDMGFREDLEFILASTPKDRRTLLFSAT-LPKAIVALAESYQRDALRLAVAGETR 212

Query: 456 KPIKTV-----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN-S 509
                V     ++P      V+  L+ V  +   A   C         N R  V     S
Sbjct: 213 GHADIVYRAVRVMPREVEHAVVNILRYV--DAPVAIVFC---------NTRDGVRHLQAS 261

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L E   S++A+  G +   ++ + + + ++G  ++ +AT V   GID+    ++I  +  
Sbjct: 262 LTERGFSAVAL-SGELGQGERNAALQALRDGRARVCVATDVAARGIDLPGLDLVIHADLP 320

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           H      H+  GR GR     + ++L  P   + +    ++ K + D
Sbjct: 321 HDAEVMQHR-SGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIAKVSPD 366


>gi|134034145|sp|Q0CXD0|IF4A_ASPTN RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
          Length = 396

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 132/301 (43%), Gaps = 62/301 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    ++      QA+I+AP   LAQQ  + +        I   
Sbjct: 64  IAQAQSGTGKTATFSISALQKIDPNLKACQALIVAPTRELAQQIQKVVVAIGDFMNINCH 123

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRF-- 406
              G        KAL+        I++GT    QD IQ       ++ L I+DE      
Sbjct: 124 ACIGGTAIRDDMKALQE----GPPIVVGTPGRIQDMIQRRVLKTDQMKLFILDEADEMLS 179

Query: 407 -GVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G  +++    +L  +AT   V+L++AT +P+          D+ ++T K   R P++ +
Sbjct: 180 RGFTEQIYDIFQLLPQAT--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPVRIL 225

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------R 506
           +          ++ ++ L EG K ++I  + EE K      + E               +
Sbjct: 226 V----------KKQELTL-EGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 274

Query: 507 FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++
Sbjct: 275 VDWLTDKLTARDFTVSAMHGDMEQSQRDIIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 334

Query: 564 I 564
           I
Sbjct: 335 I 335


>gi|167037337|ref|YP_001664915.1| DEAD/DEAH box helicase domain-containing protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115753|ref|YP_004185912.1| DEAD/DEAH box helicase domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856171|gb|ABY94579.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928844|gb|ADV79529.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 1085

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 133/334 (39%), Gaps = 66/334 (19%)

Query: 302 VGSGKTLVALI-AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT---G 357
            GSGK+L+  I A+  + +     +++ P+  L       + + TQ T + +E +T    
Sbjct: 336 TGSGKSLLFQIPAIYLSEKYKAVTIVITPLIALM------VDQVTQLTDLGLENVTFVNS 389

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALF-QDSIQYY----KLILVIVDEQH---RFG-- 407
           ++P   + + L++I  G+  I+  +  LF  +SI+      ++ L+++DE H    +G  
Sbjct: 390 DIPFDEKERRLKKIKEGEYSIVYLSPELFLANSIESLIGERRIGLLVIDEAHLVTTWGRD 449

Query: 408 -----------VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA--- 453
                      +++  KL        VL +TAT +      T + D  +S     P    
Sbjct: 450 FRADYWYLGEYIEKLRKLNHDKFNFPVLCLTATAVYMGTEDT-VNDTIVSLSLRNPKIYL 508

Query: 454 GRKPIKTVIIPINRIDE-----VIERLKV---------VLSEGKKAYWICPQIEEKKESN 499
           G      +   IN+ID       +E  K+          +    K    CP   +     
Sbjct: 509 GNVKRNNIHFEINKIDTKSITGSLENFKIEKTKENIIKCIDNNIKCIVYCPYTTQ----- 563

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              V + FNSL+E +   +   +G     +K      FK G   ++I+T    +G+D+ D
Sbjct: 564 ---VEDVFNSLNEKYKKRVGKYYGSFDKYEKSEAQYKFKYGDYTVMISTKAFGMGVDIKD 620

Query: 560 ASIIIIENAEHFG----LAQLHQLRGRVGRGEEI 589
                IE   H      LA   Q  GR  R +EI
Sbjct: 621 -----IEKVYHLAPTGNLADYVQEIGRAARNQEI 649


>gi|114330892|ref|YP_747114.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas
           eutropha C91]
 gi|114307906|gb|ABI59149.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
          Length = 455

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 154/354 (43%), Gaps = 42/354 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT----LVA 310
           +N+   I + +L     SPT  Q+ AI +++           +     G+GKT    L A
Sbjct: 6   LNLHPAIVKAVLAAGYTSPTPIQQQAIPELIAGHDV------MASAQTGTGKTAAFMLPA 59

Query: 311 LIAMAAAVEAGGQA---VIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRK 366
           L  +A   +  G+    +++ P   LA Q  E   KY +   ++ V  I G MP   + K
Sbjct: 60  LHRLATPAKIQGRGPRILVLTPTRELALQVSEAASKYGKFLPRVNVVSILGGMPYPLQNK 119

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
            L ++      +++ T     D I+     + +L ++++DE  R      +   ++    
Sbjct: 120 LLSQVVD----VLVATPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIHDVER---- 171

Query: 422 HVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVL 479
              + ++TP  R TL+ ++  D  I KI  +   + P +  I   + ++D + +R+  V 
Sbjct: 172 ---IASSTPTNRQTLLFSATLDTAIEKIATRLL-KMPKRIQIASQHAKLDHIEQRMHYVD 227

Query: 480 SEGKKA----YWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKES 532
               K     + +C     K+   F +     +SL ++ ++     A +HG M+  ++  
Sbjct: 228 DLTHKNRLLDHLLC-DTTIKQAIVFTATKRDADSLADNLSAQGHKAAAMHGDMTQRERTR 286

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            +   + G  K+L+AT V   GID+ D + +I  +   F    +H++ GR GR 
Sbjct: 287 TLTGLRQGRLKILVATDVAARGIDIADITHVINFDLPKFAEDYVHRI-GRTGRA 339


>gi|332995376|gb|AEF05431.1| ATP-dependent RNA helicase DbpA [Alteromonas sp. SN2]
          Length = 460

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 138/324 (42%), Gaps = 47/324 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQ---HYEFIKKYTQNTQI 350
           I Q   GSGKTL  +I     ++      Q +++ P   LA Q    Y    K   N ++
Sbjct: 45  IGQAQTGSGKTLCFVIPALEKIDPTLFATQVLVLCPTRELADQVAVQYRNAAKQIGNIKV 104

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV-----IVDEQHR 405
           +   I G  P   + ++L+   HG AH+++GT     + ++  +L+L      ++DE  R
Sbjct: 105 MT--ICGGQPMGPQIQSLK---HG-AHVVVGTPGRVMEHVEKRRLMLKDVRLRVLDEADR 158

Query: 406 F---GVQQRLKL--TQKATAPHVLLMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKP 457
               G +  LK+  +        LL +AT    I R +    L +  I K+    + +  
Sbjct: 159 MLDMGFEDDLKVIFSPMKKGVQTLLFSATYTEEIER-IADQYLTEPVICKVESDESNKPS 217

Query: 458 IKTV---IIPINRIDEVIERLKVVL--SEGKKAYWICPQIEEKKESNFR-SVVERFNSLH 511
           I  +   ++P  RI    + LK +L  S+ K A   C         N R  V E   SL 
Sbjct: 218 ITQIGYNVLPHTRI----QTLKAILTDSQPKTAIVFC---------NRRVQVTEVVASLL 264

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E   S+ A + G M   ++ +V++ F +   ++L+AT V   G+D+ D   +I       
Sbjct: 265 EDGFSA-AGLQGEMEQYERTAVLNQFASDALQVLVATDVAARGLDIDDIPCVINYTVSEE 323

Query: 572 GLAQLHQLRGRVGRGEEISSCILL 595
               +H++ GR  R     + I L
Sbjct: 324 PETHIHRI-GRTARAGAEGTAITL 346


>gi|332218198|ref|XP_003258246.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Nomascus
           leucogenys]
          Length = 643

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 178 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 237

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     +  I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 238 LSVAC-FYGGTSYQSQ----INHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 291

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 292 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 346

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 347 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 400

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 401 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 456

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 457 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 494


>gi|296191894|ref|XP_002743821.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
           [Callithrix jacchus]
          Length = 650

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 138/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 132 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 189

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 245

Query: 401 DEQHRF---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G +             R  L   AT P  +   A    R     ++G++++
Sbjct: 246 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 305

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 306 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 347

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 407

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 408 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 459


>gi|282862091|ref|ZP_06271154.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282563116|gb|EFB68655.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 545

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 130/328 (39%), Gaps = 33/328 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQA---VIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A   A   +++ P   LAQQ  + +  Y  +  + V
Sbjct: 105 RGRTGSGKTLAFGLALLARTAGRRAQPHAPLAMVLVPTRELAQQVTDALTPYATSVNLRV 164

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFG 407
             + G M  + +  +L R     A +++ T    +D I+       ++ + ++DE     
Sbjct: 165 ATVVGGMSISRQAGSLRR----GAEVLVATPGRLKDLIERGDCRLDEVTVTVLDEAD--- 217

Query: 408 VQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                ++      P V  LL    P  + ++ ++  D +I ++  K     P+   + P 
Sbjct: 218 -----QMADMGFMPQVVALLKQVEPDGQRMLFSATLDKNIDRLV-KMFLTDPVVHSVDPS 271

Query: 466 NRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSSIAI 520
                 +E   L V     KKA        E +   F   +   +RF           A 
Sbjct: 272 AGAVTTMEHHVLHVADETDKKAVATRIAAREGRVIMFVDTKRAADRFAKRLLASGVRAAA 331

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG  S   +   +D FKNG    L+AT V   GI V D  +++  +        LH+  
Sbjct: 332 LHGGRSQPQRNRTLDQFKNGQVTALVATNVAARGIHVDDLDLVVNVDPPTDHKDYLHR-G 390

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRL 608
           GR  R  E  S + L  P   K   TRL
Sbjct: 391 GRTARAGESGSVVTLVLPE-EKREMTRL 417


>gi|194374303|dbj|BAG57047.1| unnamed protein product [Homo sapiens]
          Length = 643

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 178 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 237

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     +  I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 238 LSVAC-FYGGTSYQSQ----INHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 291

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 292 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 346

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 347 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 400

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 401 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 456

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 457 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 494


>gi|167750832|ref|ZP_02422959.1| hypothetical protein EUBSIR_01815 [Eubacterium siraeum DSM 15702]
 gi|167656267|gb|EDS00397.1| hypothetical protein EUBSIR_01815 [Eubacterium siraeum DSM 15702]
          Length = 824

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 14/188 (7%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           K +R+I       ++SA+   + ++    +    +L+G  GSGKT V L  +  A++ G 
Sbjct: 275 KAVRSIDDIVLSDEQSAVYSGMSELMDSGKPQCALLKGVTGSGKTTVFLKLIDKALKQGK 334

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q    F   +  N    V +I  N+    R    +RI  G+A I+IG
Sbjct: 335 TALMLVPEISLTPQMVRNFTDLFGSN----VAVIHSNLSLGQRTDEYKRIEKGEARIVIG 390

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH--------VLLMTATPIPR 433
           T +     +    +I++  + +H +  ++  +   ++ A          +LL +ATP   
Sbjct: 391 TRSAVFAPLDNIGIIVIDEEGEHTYKSEKSPRYQARSIAKQRCFYHNATLLLASATPSLE 450

Query: 434 TLVLTSLG 441
           +    S+G
Sbjct: 451 SAYFASIG 458


>gi|167614869|ref|ZP_02383504.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis Bt4]
          Length = 465

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 137/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + +++  +  + + V
Sbjct: 49  IAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQVAQEVRRLARAEENVKV 108

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHII+GT     D +    L L     +++DE  R  
Sbjct: 109 LTLCGGTPMRPQTQSLE---HG-AHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRML 164

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K      +     P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 165 DMGFFDDIAK------VARLCPPTRQTLLFSATYPDGIAKLSQQFL-RNP-KEVKLEERH 216

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   ++  +        +  +   +  + LH     ++A+
Sbjct: 217 DDSKIRQRFYEVTEDERLHAVGLLLKHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 276

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 277 -HGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI- 334

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 335 GRTGRADQ 342


>gi|171185954|ref|YP_001794873.1| DEAD/DEAH box helicase domain-containing protein [Thermoproteus
           neutrophilus V24Sta]
 gi|170935166|gb|ACB40427.1| DEAD/DEAH box helicase domain protein [Thermoproteus neutrophilus
           V24Sta]
          Length = 937

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 153/368 (41%), Gaps = 78/368 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVI 326
           PT+ Q  AI +IL      N +L I     GSGKT  A++ + + +  GG        + 
Sbjct: 32  PTEPQRMAIPEILAG----NNVLVI--APTGSGKTETAMLPILSKMLEGGVEKPGIYVLY 85

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P+  L +   + I+ + +     V++  G+  +A R    +R +    HI+I T  + 
Sbjct: 86  ITPLRALNRDLLDRIRWWGERVGFRVDVRHGDTDKADR----QRQSKTPPHILITTPEML 141

Query: 387 QDSIQYYKLI-------LVIVDEQHRF-----GVQ-----QRLKLTQKATAPHVLLMTAT 429
           Q  +   +L+        V+VDE H       GVQ     +RL+         V L    
Sbjct: 142 QAIMTGRRLLEHLRELRWVVVDEVHELAEDKRGVQLSVALERLRYHVGRDFQIVGLSATV 201

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI----------DEVIERLKVVL 479
             P  +    +GD           GR P K V++   R           DE  E  K+  
Sbjct: 202 GSPVEVAKFLVGD-----------GR-PFKVVLVSFARYMKLDVARPKPDE--EDHKIAE 247

Query: 480 SEG------KKAYWICPQIEEKKES----NFRSVVE----RFNSLHEHFTSSIAIIHGRM 525
             G       +  +I   +EE + +    N RS+ E    RF+ L       IA+ H  +
Sbjct: 248 VSGLFPDVVARLRYIKRLVEENRSTLVFVNTRSMAELLGFRFSQLFNDL--PIAVHHSSL 305

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S + + SV +  K G  K ++AT+ +E+GID+    +++   + H    Q+ +L  RVGR
Sbjct: 306 SKMVRISVEERLKKGELKAVVATSSLELGIDIGHVDLVVQYISPH----QVTRLLQRVGR 361

Query: 586 -GEEISSC 592
            G  ++S 
Sbjct: 362 SGHRLTSV 369


>gi|149065924|gb|EDM15797.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_a [Rattus
           norvegicus]
          Length = 652

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 138/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 132 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 189

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 245

Query: 401 DEQHRF---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G +             R  L   AT P  +   A    R     ++G++++
Sbjct: 246 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 305

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 306 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 347

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 407

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 408 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 459


>gi|42521946|ref|NP_967326.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574476|emb|CAE77980.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus
           HD100]
          Length = 412

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 144/352 (40%), Gaps = 46/352 (13%)

Query: 261 IAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +++ +LRN+     F  T  Q  AI  IL+       +L I Q   G+GKT    I +  
Sbjct: 8   LSEDLLRNLTDNGFFRTTDIQYKAIPSILK----GEDVLAIAQ--TGTGKTAAFAIPIIN 61

Query: 317 AVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
            +          G + +I+ P   LAQQ  E   K +++T++    + G + Q  +   +
Sbjct: 62  MIHTEKSSKRAIGIKCLILVPTRELAQQIGEVFNKLSKHTKVKPFALFGGVEQDAQ---I 118

Query: 369 ERIAHGQAHIIIGTHALF----QDSIQYYKLILVIVDE-QHRFG---VQQRLKLTQKATA 420
           +++  G   +I     +F    Q  +   ++  +++DE  H      +     + +K T 
Sbjct: 119 QKLQDGIDILISTPGRMFDLIAQGHVDISRIETLVLDEADHMLDLGFIDDITSVKRKLTK 178

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            H          +TL  ++  + +I K+         I+  I P + + + I    + + 
Sbjct: 179 RH----------QTLFFSATINPEIKKLAFSQVRSSAIRIQISPEDPVSKNITHFVMHVE 228

Query: 481 EGKKAYWICPQIEEKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
              K +++   + +  +  F      R   ER              +HG     D+  VM
Sbjct: 229 MDDKRFFLAEYLRQNPDGKFIIFVRTRVRAERVAKALARVEVQSLTLHGEKDQTDRAEVM 288

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            +F+ G CK+LIAT +   GID+ D + +I  +        +H++ GR GRG
Sbjct: 289 KTFRKGDCKILIATDLSARGIDIPDVTHVINYDLPEKPENYVHRI-GRTGRG 339


>gi|332995307|gb|AEF05362.1| primosome assembly protein PriA [Alteromonas sp. SN2]
          Length = 734

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 19/202 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P K Q  AI  + Q        + +L+G  GSGKT V L ++   ++AG Q +I+ P IG
Sbjct: 195 PDKEQGVAIAALNQQ--HGTFAISLLEGVTGSGKTEVYLQSIEPLLKAGKQVLILVPEIG 252

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q    F K++     I V ++   +  A R    +R   G+  IIIGT +     ++
Sbjct: 253 LTPQTVSRFEKRFN----IPVGVLHSQLTDAARLSVWQRARAGELGIIIGTRSAIFTPLK 308

Query: 392 YYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
              +I  IVDE+H          R+  +    +  K  +  +LL +ATP   TL     G
Sbjct: 309 NPGMI--IVDEEHDESFKQQDGLRYHARDLAAMRAKEHSIPLLLGSATPALETLNNALNG 366

Query: 442 DIDISKITEKPAGRKPIKTVII 463
                ++T + AG +  K  ++
Sbjct: 367 RFAHLQLTRRAAGAQSTKQYLL 388


>gi|296220525|ref|XP_002756346.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 3 [Callithrix
           jacchus]
          Length = 643

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 178 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 237

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     +  I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 238 LSVAC-FYGGTSYQSQ----INHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 291

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 292 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 346

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 347 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 400

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 401 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 456

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 457 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 494


>gi|283782400|ref|YP_003373155.1| primosomal protein N' [Pirellula staleyi DSM 6068]
 gi|283440853|gb|ADB19295.1| primosomal protein N' [Pirellula staleyi DSM 6068]
          Length = 769

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 93/204 (45%), Gaps = 20/204 (9%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           + R  P +   +Q  A+  I + + ++     +L G  GSGKT V + A+   +  G QA
Sbjct: 224 LARTEPLALHPAQSHALAAINRAIDRRTSATILLHGVTGSGKTEVYIQAIERVISFGQQA 283

Query: 325 VIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P I +  Q    F  ++ +     V ++  ++  A R    E+IA G+  +I+G  
Sbjct: 284 IVLVPEISLTPQTRQRFRSRFDR-----VAVLHSHLSDAERHYHWEQIARGEVQVIVGAR 338

Query: 384 -ALFQDSIQYYKLILVIVDEQH--RFGVQQRLKLTQKATAPH--------VLLMTATPIP 432
            A+F  +     L L+++DE+H   F   +  +   +  A H        ++L TATP  
Sbjct: 339 SAVFAPAPH---LGLIVIDEEHDGSFKQSEAPRYHARDVAEHRALQLGIPLVLGTATPSL 395

Query: 433 RTLVLTSLGDIDISKITEKPAGRK 456
            +      G  ++  + ++  GR+
Sbjct: 396 ESYYRARSGKYELVPMPDRVEGRE 419


>gi|45198439|ref|NP_985468.1| AFL080Wp [Ashbya gossypii ATCC 10895]
 gi|74693084|sp|Q755A5|DBP3_ASHGO RecName: Full=ATP-dependent RNA helicase DBP3
 gi|44984326|gb|AAS53292.1| AFL080Wp [Ashbya gossypii ATCC 10895]
          Length = 535

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 126/294 (42%), Gaps = 45/294 (15%)

Query: 300 GDVGSGKTL------VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + GSGKT       +  +    +   G + ++++P   LA Q Y+ + + T    +   
Sbjct: 167 AETGSGKTFAFGVPAINSLMSEKSTPRGVKCLVISPTRELASQIYDNLVQLTDKVGLNCC 226

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G + +  +R+ L++     A +++ T     D I+     L     +++DE  R   
Sbjct: 227 CVYGGVQKDSQREQLKK-----AQVVVATPGRLLDLIEEGSAKLAGVQYLVLDEADRMLE 281

Query: 407 -GVQQRLKLTQKATAPHV---LLMTAT----------PIPRTLVLTSLGDIDISKITEKP 452
            G ++ +K   K T   V   L+ TAT             R  V  S+G+ D     E  
Sbjct: 282 KGFEEDIKRIIKETKSDVRQTLMFTATWPKEVRELASTFMRAPVKVSIGNRD-----ELS 336

Query: 453 AGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           A ++   +  VI P  +   ++E LK   S  KK   +      KKE+   S VER N  
Sbjct: 337 ANKRITQVVEVIDPFKKEKRLLELLKQYQSGAKKNDKVLIFALYKKEA---SRVER-NLK 392

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +  +  ++A IHG +S   +   +  FK GT  LL+AT V   G+D+ +   +I
Sbjct: 393 YNGY--NVAAIHGDLSQQQRTQALSEFKAGTANLLLATDVAARGLDIPNVKTVI 444


>gi|125973085|ref|YP_001036995.1| replication restart DNA helicase PriA [Clostridium thermocellum
           ATCC 27405]
 gi|256004588|ref|ZP_05429566.1| primosomal protein N' [Clostridium thermocellum DSM 2360]
 gi|281417280|ref|ZP_06248300.1| primosomal protein N' [Clostridium thermocellum JW20]
 gi|125713310|gb|ABN51802.1| replication restart DNA helicase PriA [Clostridium thermocellum
           ATCC 27405]
 gi|255991460|gb|EEU01564.1| primosomal protein N' [Clostridium thermocellum DSM 2360]
 gi|281408682|gb|EFB38940.1| primosomal protein N' [Clostridium thermocellum JW20]
 gi|316940694|gb|ADU74728.1| primosomal protein N' [Clostridium thermocellum DSM 1313]
          Length = 815

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 23/199 (11%)

Query: 267 RNIPFSPTKSQESAIKDI--LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           R +P  PT+ Q+  I  +  + D  + N +L  L G  GSGKT V L  +   +  G QA
Sbjct: 269 RTLPMKPTQEQQVVIDRVKSMLDSGEFNEVL--LHGITGSGKTEVYLQLIGHCISMGKQA 326

Query: 325 VIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P I +  Q    F  ++ ++    V ++   +    R      +  G+  +++G  
Sbjct: 327 IVLVPEISLTPQMVNRFKGRFGED----VAVMHSRLSLGERYDQWRLVRDGRTKVVVGAR 382

Query: 384 -ALFQDSIQYYKLILVIVDEQHRFGVQQRLK--------LTQKATAPHVLLM--TATPIP 432
            A+F     +  L LVI+DE+H    +  +           Q+    + +L+  +ATP  
Sbjct: 383 SAVFA---PFDNLGLVIIDEEHESSYKSEIVPKYHAAEIARQRCIMENAVLLYGSATPSV 439

Query: 433 RTLVLTSLGDIDISKITEK 451
            T      G+I++ ++T++
Sbjct: 440 ETYYRAKTGEIELLEMTKR 458


>gi|302845469|ref|XP_002954273.1| hypothetical protein VOLCADRAFT_121275 [Volvox carteri f.
           nagariensis]
 gi|300260478|gb|EFJ44697.1| hypothetical protein VOLCADRAFT_121275 [Volvox carteri f.
           nagariensis]
          Length = 542

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 522 HGR-MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           HGR MSD  ++ V++ FK   CK+L+AT+  E G+DV     ++  NA   G+ QL Q R
Sbjct: 428 HGRGMSDTQQQQVLNLFKETGCKVLVATSAAEEGLDVPSCEFVVRYNAAATGI-QLLQSR 486

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTR 607
           GR  R +    C +L    L  N + +
Sbjct: 487 GR-ARQKVAEFCAILQEGTLDNNLHVK 512


>gi|225439904|ref|XP_002279705.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 524

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 139/318 (43%), Gaps = 43/318 (13%)

Query: 302 VGSGKTLV----ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            GSGKTL      L+ +  A + G +AVI+ P   LA Q     KK  +  +  ++++T 
Sbjct: 174 TGSGKTLAFVCPMLMKLKHASKDGIRAVILCPTRELAAQTARESKKLAKGKKFYIKLLTK 233

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ 409
            + ++        I+     I+I T    + +I+  KL L     +++DE  +    G+ 
Sbjct: 234 ELLRSGD------ISKLPCDILISTPLRLRSAIRKKKLDLSRVEYLVLDESDKLFELGLV 287

Query: 410 QRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDI--DISKITEKPAGRKPIKTVIIPIN 466
           +++    KA + P ++        R+L   +L D   ++++     A    ++ +I   N
Sbjct: 288 KQIDAVVKACSNPSII--------RSLFSATLPDFVEELARTIMHDA----VRVIIGRKN 335

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-----FRSVVERFNSLHEHFTSS---I 518
              E+I++ K+V +  ++   +  +    +  N     F    ER   L+         +
Sbjct: 336 SASELIKQ-KLVFAGSEEGKLLALRQSFAESLNPPILLFVQSKERAKELYTELAFDDIRV 394

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            +IH  +S   +E+ +D F+ G   +LIAT VI  G+D    + +I  +      A +H+
Sbjct: 395 DVIHADLSQSQRENAVDDFRAGKTWVLIATDVIARGMDFKGINCVINYDFPDSPAAYIHR 454

Query: 579 LRGRVGRGEEISSCILLY 596
           + GR GR       I +Y
Sbjct: 455 I-GRSGRAGRTGEAITIY 471


>gi|198282005|ref|NP_001095463.1| probable ATP-dependent RNA helicase DDX17 [Bos taurus]
 gi|154757449|gb|AAI51649.1| DDX17 protein [Bos taurus]
 gi|296487004|gb|DAA29117.1| DEAD box polypeptide 17 [Bos taurus]
          Length = 650

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 138/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 132 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 189

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 245

Query: 401 DEQHRF---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G +             R  L   AT P  +   A    R     ++G++++
Sbjct: 246 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 305

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 306 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 347

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 407

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 408 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 459


>gi|262381389|ref|ZP_06074527.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
 gi|262296566|gb|EEY84496.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
          Length = 408

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 131/316 (41%), Gaps = 54/316 (17%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------QAVIMAPIGILAQQHYEFIKKYT----QNTQII 351
            G+GKT   ++ +   +  G        AVIMAP   LAQQ  + I+ +T      + + 
Sbjct: 29  TGTGKTAAYVLPVINELSKGCHPTDAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVA 88

Query: 352 VEIITGNMPQAHRRKALERIAH------GQ--AHIIIGTHALFQDSIQYYKLILVIVDEQ 403
           V   T  +    +++ LE  A       G+  +HI +GT       +   K+   ++DE 
Sbjct: 89  VYGGTDGIAWEQQKRGLEMGADIVIATPGRLLSHIKLGT-------VDLSKVSFFVLDEA 141

Query: 404 HRF---GVQQRLKLTQKATAPHV--LLMTATPIP--RTLVLTSLGDIDISKITEKPAGRK 456
            R    G    +    K   P+   ++ +AT  P  RTL  T L D +  KI        
Sbjct: 142 DRMLDMGFYDDIMQVHKQLPPYCQTIMFSATMPPKIRTLAKTILKDPEEVKIA------- 194

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSL 510
                   I+R  E I +   +  + +K   +     + +       S+ +  V+   S 
Sbjct: 195 --------ISRPPESIMQTAYICYDPQKLKILQDLFTQSRPQRVIIFSSSKMKVKELAST 246

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            +    ++A +H  +    +E VM  FK+G   +L+AT V+  GID+ D  +++  +  H
Sbjct: 247 LKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGIDINDIKLVVNFDIPH 306

Query: 571 FGLAQLHQLRGRVGRG 586
                +H++ GR  RG
Sbjct: 307 DPEDYVHRI-GRTARG 321


>gi|170058665|ref|XP_001865019.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167877695|gb|EDS41078.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 686

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 142/334 (42%), Gaps = 53/334 (15%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  +      ++         G  A+I+AP   LAQQ  +    + 
Sbjct: 156 MVGIAQ--TGSGKTLAYVAPALVHIQHQETVHRGDGPIALILAPTRELAQQIQQVANDFG 213

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIV 400
           Q T      + G  P+  + + LER     A I+I T     D ++       +   +++
Sbjct: 214 QRTNTNNTCVFGGAPKGPQIRDLER----GAEIVIATPGRLIDFLERGITNLRRCTYLVL 269

Query: 401 DEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGD---IDISKIT 449
           DE  R     F  Q R  + Q      VL+ +AT  P   R L    L D   I+I  + 
Sbjct: 270 DEADRMLDMGFEPQIRKIMGQIRPDRQVLMWSAT-WPKEVRNLAEEFLNDYIQINIGSLN 328

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVER 506
              A    ++  I+ +    E  ++L  +L+E      I  + E K        R V + 
Sbjct: 329 LS-ANHNILQ--IVDVCEDYEKDQKLMKLLTE------ISAEAETKTIVFVETKRRVDDI 379

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII-- 564
             S+  +   +++I HG  S  +++ V+++F+NG   +L+AT V   G+DV D   +I  
Sbjct: 380 TRSICRNGWRAVSI-HGDKSQQERDYVLNAFRNGRQGILVATDVAARGLDVEDVKFVINY 438

Query: 565 --IENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
               N+E +    +H++ GR GR     +   L+
Sbjct: 439 DYPSNSEDY----VHRI-GRTGRSNNTGTAYTLF 467


>gi|83953300|ref|ZP_00962022.1| dead-box protein, ATP-independent RNA helicase [Sulfitobacter sp.
           NAS-14.1]
 gi|83842268|gb|EAP81436.1| dead-box protein, ATP-independent RNA helicase [Sulfitobacter sp.
           NAS-14.1]
          Length = 731

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 133/323 (41%), Gaps = 60/323 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  +         AG   A+I+AP   LA Q    +      
Sbjct: 35  LVSAQTGSGKTVAFGLAIAPTLLGDDEKFGHAGAPLALIIAPTRELAMQVSRELTWLYGK 94

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
              +V    G M     R+AL+R     AHI++ T     D I+   + L     V++DE
Sbjct: 95  AGAVVTTCVGGMDTRTERRALDR----GAHIVVATPGRLCDHIKRNNINLSDIRAVVLDE 150

Query: 403 QHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
                  G ++ L+  L++       LL +AT +P  +         ++K  ++ A R  
Sbjct: 151 ADEMLDLGFREELEFILSEAPEERRTLLFSAT-VPAAIA-------KLAKSYQRDAQR-- 200

Query: 458 IKTV---------------IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           ++TV               + P +  + +I  L+    E K A   C         N R+
Sbjct: 201 VETVGEKKQHADIEYRALNVHPRDTENAIINVLR--FYEAKNAIVFC---------NTRA 249

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            V R  +   +   S+  + G ++  ++ + + + ++G  ++ IAT V   GID+ +  +
Sbjct: 250 AVARLTTRFTNRGFSVVALSGELTQSERTNALQALRDGRARVCIATDVAARGIDLPNLEL 309

Query: 563 IIIENAEHFGLAQLHQLRGRVGR 585
           ++  +        LH+  GR GR
Sbjct: 310 VVHADLPSNSDTLLHR-SGRTGR 331


>gi|91206537|sp|Q4X195|DBP2_ASPFU RecName: Full=ATP-dependent RNA helicase dbp2
          Length = 547

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 144/342 (42%), Gaps = 51/342 (14%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +I+AP   LA Q    I K+ ++++I  
Sbjct: 166 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRN 225

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR-- 405
             + G +P+  + + L R       + I T     D ++       ++  +++DE  R  
Sbjct: 226 TCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRML 281

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
              F  Q R  ++Q           AT P  +   AT      +  ++G +D+S   +IT
Sbjct: 282 DMGFEPQIRKIVSQIRPDRQTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRIT 341

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +       I  V+    + D++I+ L+ ++        I    +   +      + RF  
Sbjct: 342 Q-------IVEVVSDFEKRDKMIKHLEKIMENRSNKCLIFTGTKRIADE-----ITRF-- 387

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D + ++  +  
Sbjct: 388 LRQDGWPALSI-HGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYP 446

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           +     +H++ GR GR     + I  +    SK +   +++L
Sbjct: 447 NNSEDYIHRI-GRTGRAGAKGTAITFFTTENSKQARDLVTIL 487


>gi|32880087|gb|AAP88874.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17, 72kDa [synthetic
           construct]
 gi|61372130|gb|AAX43789.1| DEAD box polypeptide 17 [synthetic construct]
 gi|61372139|gb|AAX43790.1| DEAD box polypeptide 17 [synthetic construct]
          Length = 651

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 138/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 132 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 189

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 245

Query: 401 DEQHRF---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G +             R  L   AT P  +   A    R     ++G++++
Sbjct: 246 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 305

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 306 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 347

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 407

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 408 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 459


>gi|268565371|ref|XP_002639425.1| Hypothetical protein CBG04018 [Caenorhabditis briggsae]
 gi|187036206|emb|CAP24812.1| hypothetical protein CBG_04018 [Caenorhabditis briggsae AF16]
          Length = 393

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 144/333 (43%), Gaps = 50/333 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AI  IL     K R + I Q   G+GKT    I++  +++      QA+I++P
Sbjct: 50  PSAIQQRAIPAIL-----KARDV-IAQAQSGTGKTATFSISVLQSLDTQVRETQALILSP 103

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +      G     +  + + ++ +GQ H++ GT     D 
Sbjct: 104 TRELAVQIQKVVLALGDYMNVQCHACIGG---TNLGEDIRKLDYGQ-HVVSGTPGRVFDM 159

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G +++L    +   P   V+L++AT     L +TS
Sbjct: 160 IRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTS 219

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINR----IDEVIERLKVVLSEG-KKAYWICPQI 492
               D  +I  K      + IK   + ++R     D +I+    + S    K  W+  ++
Sbjct: 220 KFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTSSSFLKVDWLTDKM 279

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
              KE+NF                +++ +HG M   D++ VM  F+ G  ++LI+T V  
Sbjct: 280 ---KEANF----------------TVSSMHGDMEQKDRDEVMKEFRAGNTRVLISTDVWA 320

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            G+DV   S++I  +  +     +H++ GR GR
Sbjct: 321 RGLDVPQVSLVINYDLPNNRELYIHRI-GRSGR 352


>gi|329728852|gb|EGG65273.1| primosomal protein N' [Staphylococcus aureus subsp. aureus 21193]
          Length = 802

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 97/480 (20%), Positives = 187/480 (38%), Gaps = 108/480 (22%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T+ Q  A + I   +  + +   +L G  GSGKT V L  +   +  G QA+++ P I +
Sbjct: 266 TEDQYKAYEAIKAKIVSQEQETFLLHGVTGSGKTEVYLQTIEDVLSQGKQAMMLVPEIAL 325

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-LFQDSIQ 391
             Q    F +++  +    V ++   +    R    ++I  G+A + +G  + +F     
Sbjct: 326 TPQMVLRFKRRFGDD----VAVLHSGLSNGERYDEWQKIRDGRARVSVGARSSVF---AP 378

Query: 392 YYKLILVIVDEQHRFGVQQR-------LKLTQKATAPH---VLLMTATP----------- 430
           +  L L+I+DE+H    +Q         ++ Q  +  H   V+L +ATP           
Sbjct: 379 FKNLGLIIIDEEHESTYKQEDYPRYHAREIAQWRSEYHHCPVILGSATPCLESYARAEKG 438

Query: 431 ------IPRTLVLTSLGDIDISKITEK-PAGRKPI------KTVIIPINRIDEVI----- 472
                 +P  +   +L +IDI  + E+   G + +      + + + +NR ++V+     
Sbjct: 439 VYHLLSLPNRVNQQALPEIDIVDMREELSEGNRSMFSKDLREAIQLRLNRKEQVVLFLNR 498

Query: 473 ------------------ERLKVVLSEGK-----KAYWI---------CPQIEEKKESNF 500
                                 + L+  K     K ++          CP  E +     
Sbjct: 499 RGYASFMLCRDCGYVPQCPNCDISLTYHKTTDLLKCHYCGYQETPPNQCPNCESEHIRQV 558

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDK----ESVMDSFKNGTCKLLIATTVIEVGID 556
            +  ++   L +       II   +    K    E ++  F+ G   +L+ T +I  G+D
Sbjct: 559 GTGTQKVEELLQQEFEDARIIRMDVDTTSKKGAHEKLLTEFEKGNGDILLGTQMIAKGLD 618

Query: 557 VVDASIIIIENAE------HFGLAQ-----LHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
             + +++ + NA+       F  ++     L Q+ GR GR E+    I+  + P   + Y
Sbjct: 619 YPNITLVGVLNADTMLNLPDFRASERTYQLLTQVAGRAGRHEKAGQVIIQTYNP---DHY 675

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEI--------LGIKQSGMPKFLIAQPELHDSLLE 657
           + L V KN  D      ++++ RK G+           I    M K + A   +H  LL+
Sbjct: 676 SILDVQKN--DYLTFYRQEMEYRKLGKYPPYYYLINFTISHKEMKKVMEASQHVHKILLQ 733


>gi|161723115|ref|YP_438416.2| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
          Length = 465

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 136/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + +++  +  + + V
Sbjct: 49  IAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQVAQEVRRLARAEENVKV 108

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHII+GT     D +    L L     +++DE  R  
Sbjct: 109 LTLCGGTPMRPQTQSLE---HG-AHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRML 164

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K            P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 165 DMGFFDDIAKVA------RLCPPTRQTLLFSATYPDGIAKLSQQFL-RNP-KEVKLEERH 216

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   ++  +        +  +   +  + LH     ++A+
Sbjct: 217 DDSKIRQRFYEVTEDERLHAVGLLLKHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 276

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 277 -HGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI- 334

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 335 GRTGRADQ 342


>gi|156405006|ref|XP_001640523.1| predicted protein [Nematostella vectensis]
 gi|156227658|gb|EDO48460.1| predicted protein [Nematostella vectensis]
          Length = 407

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 152/357 (42%), Gaps = 61/357 (17%)

Query: 260 KIAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           K+ + +LR I       P+  Q+ AIK IL     K R + I Q   G+GKT    I++ 
Sbjct: 40  KLREDLLRGIYAYGFEKPSAIQQRAIKPIL-----KGRDV-IAQAQSGTGKTATFSISVL 93

Query: 316 AAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A++      QA++++P   LA Q  + +        +      G     +  + + ++ 
Sbjct: 94  QAIDTQLREPQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGG---TNIGEDIRKLD 150

Query: 373 HGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--H 422
           +GQ HI+ GT     D I+   L        +L   DE    G ++++    +   P   
Sbjct: 151 YGQ-HIVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 209

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE---------- 470
           V+L++AT     L +TS    D  +I  K      + IK   + + R +           
Sbjct: 210 VVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 269

Query: 471 --VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
              I +  +  +  +K  W+    E+ +E+NF                ++A +HG M   
Sbjct: 270 TLTITQAVIFCNTKRKVDWLT---EKMREANF----------------TVASMHGDMPQK 310

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++E++M  F+ G  ++LI+T V   G+DV   S++I  +  +     +H++ GR GR
Sbjct: 311 EREAIMKDFRAGQSRVLISTDVWARGLDVQQVSLVINYDLPNNRELYIHRI-GRSGR 366


>gi|47678395|emb|CAG30318.1| DDX17 [Homo sapiens]
 gi|109451124|emb|CAK54423.1| DDX17 [synthetic construct]
 gi|109451702|emb|CAK54722.1| DDX17 [synthetic construct]
 gi|119580647|gb|EAW60243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_c [Homo
           sapiens]
 gi|169145045|emb|CAQ08924.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
 gi|208967743|dbj|BAG72517.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [synthetic construct]
          Length = 652

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 138/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 132 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 189

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 245

Query: 401 DEQHRF---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G +             R  L   AT P  +   A    R     ++G++++
Sbjct: 246 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 305

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 306 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 347

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 407

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 408 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 459


>gi|21232073|ref|NP_637990.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|21113816|gb|AAM41914.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 642

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 134/322 (41%), Gaps = 41/322 (12%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + +++ A   +   QA+++AP   LA Q  E  +KY +      V  
Sbjct: 52  QAQTGTGKTAAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLP 111

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF 406
           + G  P A +  AL+R      H+++GT     D +        Q   L+L   DE  R 
Sbjct: 112 VYGGQPYAQQLSALKR----GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRM 167

Query: 407 G----VQQRLK-LTQKATAPHVLLMTAT--PIPRTLVLTSLGD---IDISKITEKPAGRK 456
           G    V+  LK L +K     V L +AT  P  R +  T L D   + I+  T   A  +
Sbjct: 168 GFIDDVEAVLKKLPEKR---QVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIR 224

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
                +  ++++D +   L+V   +G   +           +  ++  E      +    
Sbjct: 225 QRYWWVSGLHKLDALTRILEVEPFDGMIIF-----------ARTKAATEELAQKLQARGL 273

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           + A I+G M    +E  +   K+G   +L+AT V   G+DV   S ++  +  +   + +
Sbjct: 274 AAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYV 333

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           H++ GR GR       IL   P
Sbjct: 334 HRI-GRTGRAGRNGDAILFVTP 354


>gi|297261056|ref|XP_001092491.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Macaca
           mulatta]
 gi|297708870|ref|XP_002831174.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Pongo
           abelii]
 gi|332859781|ref|XP_525595.3| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Pan
           troglodytes]
 gi|3122595|sp|Q92841|DDX17_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX17; AltName:
           Full=DEAD box protein 17; AltName: Full=DEAD box protein
           p72; AltName: Full=RNA-dependent helicase p72
 gi|1592565|gb|AAC50787.1| DEAD-box protein p72 [Homo sapiens]
 gi|2832596|emb|CAB09792.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
 gi|119580650|gb|EAW60246.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_f [Homo
           sapiens]
          Length = 650

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 138/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 132 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 189

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 245

Query: 401 DEQHRF---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G +             R  L   AT P  +   A    R     ++G++++
Sbjct: 246 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 305

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 306 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 347

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 407

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 408 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 459


>gi|242007840|ref|XP_002424727.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus
           corporis]
 gi|212508220|gb|EEB11989.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus
           corporis]
          Length = 449

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 135/320 (42%), Gaps = 63/320 (19%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +         +    
Sbjct: 119 QAQSGTGKTATFSISILQQIDTSINECQALILAPTRELAQQIQKVVIALGDFMNAMCHAC 178

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFG 407
            G     + R+ + ++ HG  H+++GT     D I    L        +L   DE    G
Sbjct: 179 IGG---TNVREDMRKLEHG-VHVVVGTPGRVYDMINRRCLRTDRIKIFVLDEADEMLSRG 234

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
            + ++         H +  T     + ++L++    D+ ++++K   R PI  ++     
Sbjct: 235 FKDQI---------HDVFQTLDVDVQVILLSATMPHDVLEVSKKFM-RNPINILV----- 279

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE------------------SNFRSVVERFNS 509
                ++ ++ L EG K ++I  + EE K                    N R  V+    
Sbjct: 280 -----QKDELTL-EGIKQFYISVEREEWKFETLCDLYETLTITQAVIFCNTRRKVDMLTD 333

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII---- 565
                  +++ +HG M   ++E +M  F++G+ ++LI T ++  GIDV   S++I     
Sbjct: 334 FMHKKDFTVSAMHGDMEQREREFIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 393

Query: 566 ENAEHFGLAQLHQLRGRVGR 585
            N E++    +H++ GR GR
Sbjct: 394 SNRENY----IHRI-GRSGR 408


>gi|312977401|ref|ZP_07789149.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus CTV-05]
 gi|310895832|gb|EFQ44898.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus CTV-05]
          Length = 589

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 121/326 (37%), Gaps = 59/326 (18%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G GK++   I   A + +G   VI   I ++  Q    I    QN  I    +    PQ
Sbjct: 39  TGGGKSMCYQIP--ALINSGVTLVISPLISLMKDQ----IDNLKQNG-INAAALNSTTPQ 91

Query: 362 AHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQH---------RFG 407
                 L +   G+  +I  T        F+  + +  + LV VDE H         R  
Sbjct: 92  EEVNPILRQAYEGKIKLIYITPERLAIDYFRYQLNFLDIDLVAVDEAHCISQWGHDFRPA 151

Query: 408 VQQRLK-LTQKATAPHVLLMTATPIP--------------RTLVLTSLGDIDISKITEKP 452
            +Q L  +    + P++L +TAT  P                +++TS    +IS      
Sbjct: 152 YRQLLDGINSLKSRPNILALTATATPAVQDDICEQLNIPKENMIVTSFARPNIS------ 205

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
                 K V  P N    + E +K    +    Y           +N R  VE       
Sbjct: 206 -----FKVVNSPQNTPLYISEYIKAHQDKAGIIY-----------TNTRKKVESLTDYLA 249

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               S+   HG M   ++  V ++F+    ++++AT    +GID  +   +I  ++    
Sbjct: 250 KKGISVGAYHGGMDSSERSQVQEAFQFDEFQVIVATNAFGMGIDKSNVRFVIHASSAR-N 308

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
           +   +Q  GR GR  E S  IL+YHP
Sbjct: 309 MESYYQEAGRAGRDGEESKAILIYHP 334


>gi|312081503|ref|XP_003143055.1| ATP-dependent helicase DDX48 [Loa loa]
 gi|307761780|gb|EFO21014.1| ATP-dependent helicase DDX48 [Loa loa]
          Length = 399

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 145/340 (42%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    IA+  +++      QA+I++P
Sbjct: 54  PSAIQQRAIKQIV-----KGRDV-IAQAQSGTGKTATFSIAVLQSLDISLRETQALILSP 107

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +      G        + + ++ +GQ H++ GT     D 
Sbjct: 108 TRELAVQIQKVVLALGDYLNVQCHACIGGTNVG---EDIRKLDYGQ-HVVSGTPGRVFDM 163

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G +++L    +   P   V+L++AT     L +TS
Sbjct: 164 IRRRNLRTRSIKMLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTS 223

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGKKA 485
               D  +I  K      + IK   + ++R +   + L             +  +  +K 
Sbjct: 224 KFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLCDLYDTLTITQAVIFCNTRRKV 283

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ KE+NF                +++ +HG M   +++++M  F+ G  +LL
Sbjct: 284 DWLA---EKLKEANF----------------TVSSMHGEMEQKERDAIMKEFRGGASRLL 324

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I+T V   G+D+   S+++  +  +     +H++ GR GR
Sbjct: 325 ISTDVFARGLDIPQVSLVVNYDLPNNRELYIHRI-GRSGR 363


>gi|297565173|ref|YP_003684145.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus
           silvanus DSM 9946]
 gi|296849622|gb|ADH62637.1| DEAD/DEAH box helicase domain protein [Meiothermus silvanus DSM
           9946]
          Length = 538

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 9/84 (10%)

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL---AQ 575
           A IHG MS  ++E V+  F+ GT  +L+AT V   G+D+ +  +++     HF L   A+
Sbjct: 275 APIHGDMSQRERERVLGRFREGTDTVLVATDVAARGLDIPEVDLVV-----HFRLPEKAE 329

Query: 576 LHQLR-GRVGRGEEISSCILLYHP 598
            +Q R GR GR       IL Y P
Sbjct: 330 PYQHRSGRTGRAGRSGRVILFYGP 353


>gi|213162358|ref|ZP_03348068.1| Mfd protein [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
          Length = 33

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/33 (72%), Positives = 28/33 (84%)

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           T+IE GID+  A+ IIIE A+HFGLAQLHQLRG
Sbjct: 1   TIIETGIDIPTANTIIIERADHFGLAQLHQLRG 33


>gi|161784285|sp|Q5BCU6|PRP28_EMENI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|259486970|tpe|CBF85264.1| TPA: Pre-mRNA-splicing ATP-dependent RNA helicase prp28 (EC
           3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5BCU6]
           [Aspergillus nidulans FGSC A4]
          Length = 782

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 134/331 (40%), Gaps = 55/331 (16%)

Query: 302 VGSGKTLVALIAMAAAV-------------EAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
            GSGKT   L+ +   +               G  A+++AP   LAQQ     KK+T+  
Sbjct: 392 TGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPL 451

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQ 403
              V  I G      +  +L       A III T     D I+   L+L     VI+DE 
Sbjct: 452 GFNVVSIVGGHSFEEQAYSL----RNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEA 507

Query: 404 HR---FGVQQRL----------------KLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
            R    G ++ +                +  + ++A    L +     +T++ T+     
Sbjct: 508 DRMIDLGFEEPVNKILDALPVTNEKPDTEEAEDSSAMSRHLGSKDRYRQTMMYTATMPTA 567

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           + +I  K   R  I T+      +D V +R++++  E K+   +    E     +FR  +
Sbjct: 568 VERIARKYLRRPAIVTIGSAGEAVDTVEQRVEMIAGEDKRKKRLG---EILSSGDFRPPI 624

Query: 505 ERFNSLHEHFTS----------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F ++  +  +          S   +HG  +   +E+ + S +NG+  +L+AT +   G
Sbjct: 625 IVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRG 684

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           IDV D S++I  N      +  H++ GR GR
Sbjct: 685 IDVPDVSLVINFNMATSIESYTHRI-GRTGR 714


>gi|253731829|ref|ZP_04865994.1| DNA replication factor Y [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724428|gb|EES93157.1| DNA replication factor Y [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 802

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 97/480 (20%), Positives = 187/480 (38%), Gaps = 108/480 (22%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T+ Q  A + I   +  + +   +L G  GSGKT V L  +   +  G QA+++ P I +
Sbjct: 266 TEDQYKAYEAIKAKIVSQEQETFLLHGVTGSGKTEVYLQTIEDVLSQGKQAMMLVPEIAL 325

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-LFQDSIQ 391
             Q    F +++  +    V ++   +    R    ++I  G+A + +G  + +F     
Sbjct: 326 TPQMVLRFKRRFGDD----VAVLHSGLSNGERYDEWQKIRDGRARVSVGARSSVF---AP 378

Query: 392 YYKLILVIVDEQHRFGVQQR-------LKLTQKATAPH---VLLMTATP----------- 430
           +  L L+I+DE+H    +Q         ++ Q  +  H   V+L +ATP           
Sbjct: 379 FKNLGLIIIDEEHESTYKQEDYPRYHAREIAQWRSEYHHCPVILGSATPCLESYARAEKG 438

Query: 431 ------IPRTLVLTSLGDIDISKITEK-PAGRKPI------KTVIIPINRIDEVI----- 472
                 +P  +   +L +IDI  + E+   G + +      + + + +NR ++V+     
Sbjct: 439 VYHLLSLPNRVNQQALPEIDIVDMREELSEGNRSMFSKDLREAIQLRLNRKEQVVLFLNR 498

Query: 473 ------------------ERLKVVLSEGK-----KAYWI---------CPQIEEKKESNF 500
                                 + L+  K     K ++          CP  E +     
Sbjct: 499 RGYASFMLCRDCGYVPQCPNCDISLTYHKTTDLLKCHYCGYQETPPNQCPNCESEHIRQV 558

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDK----ESVMDSFKNGTCKLLIATTVIEVGID 556
            +  ++   L +       II   +    K    E ++  F+ G   +L+ T +I  G+D
Sbjct: 559 GTGTQKVEELLQQEFEDARIIRMDVDTTSKKGAHEKLLTEFEKGNGDILLGTQMIAKGLD 618

Query: 557 VVDASIIIIENAE------HFGLAQ-----LHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
             + +++ + NA+       F  ++     L Q+ GR GR E+    I+  + P   + Y
Sbjct: 619 YPNITLVGVLNADTMLNLPDFRASERTYQLLTQVAGRAGRHEKAGQVIIQTYNP---DHY 675

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEI--------LGIKQSGMPKFLIAQPELHDSLLE 657
           + L V KN  D      ++++ RK G+           I    M K + A   +H  LL+
Sbjct: 676 SILDVQKN--DYLTFYRQEMEYRKLGKYPPYYYLINFTISHKEMKKVMEASQHVHKILLQ 733


>gi|156848475|ref|XP_001647119.1| hypothetical protein Kpol_1036p3 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160385736|sp|A7TEF4|FAL1_VANPO RecName: Full=ATP-dependent RNA helicase FAL1
 gi|156117803|gb|EDO19261.1| hypothetical protein Kpol_1036p3 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 399

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 135/327 (41%), Gaps = 70/327 (21%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I M  A++      QA++++P   LA Q  + +        +   
Sbjct: 64  IAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQVVSNLGDYMNVQSY 123

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDE- 402
            +TG       +  L R+      ++ GT          H L   ++Q   LIL   DE 
Sbjct: 124 AMTGGKTM---KDDLNRMQKNGCQVVSGTPGRVLDMFKRHLLNTRNVQM--LILDEADEL 178

Query: 403 -QHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
                G +Q++    T+   A  V++++AT              DI ++T+K     P+K
Sbjct: 179 LGESLGFKQQIYDIFTKLPAACQVVVVSATMSK-----------DILEVTKKFMS-DPVK 226

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL--------- 510
            ++          +R ++ L EG K Y++     EK++  F ++ + ++SL         
Sbjct: 227 ILV----------KRDEISL-EGIKQYYVNV---EKEDWKFDTLCDLYDSLTITQCVIFC 272

Query: 511 ---------HEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                        T S   +  +HG M   D+  VM  F++G  ++LI+T V   GIDV 
Sbjct: 273 NTKKKVDWLSAKLTQSNFAVVSMHGDMKQEDRNKVMSDFRSGHSRVLISTDVWARGIDVQ 332

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGR 585
             S++I  +        +H++ GR GR
Sbjct: 333 QVSLVINYDIPEIMENYIHRI-GRSGR 358


>gi|309262543|ref|XP_003085827.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Mus
           musculus]
 gi|309271943|ref|XP_003085450.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Mus
           musculus]
          Length = 670

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 195 TGSGKTLSYLLPAIVHIIHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKST 254

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 255 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 310

Query: 406 FGVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  +  ++G +++S      A
Sbjct: 311 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------A 364

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + +++I  ++ ++SE           +E K   F     R + L 
Sbjct: 365 NHNILQIVDVCHDVEKDEKLILLMEEIMSE-----------KENKTIVFVETKRRCDELT 413

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V+  FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 414 RKMRRDGWPAMGIHGDKSQQERDWVLSEFKHGKASILIATDVASRGLDVEDVKFVINYDY 473

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K +   +SVL+
Sbjct: 474 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQASDLISVLR 516


>gi|261212735|ref|ZP_05927019.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
 gi|260837800|gb|EEX64477.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
          Length = 408

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 117/278 (42%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E +        +    + G
Sbjct: 44  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCG 103

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +  ++ AL        +I++ T      L Q  +   ++  +++DE  R        
Sbjct: 104 GVDKTEQQNALAE----NPNILVATTGRLFDLTQSGLSLNRVTTLVLDEADR-------- 151

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 152 LLDMGFWPQVQALASQTASVRQTVMCSATFSDELKLKAQQLMRAPTQVSANPENSINQAV 211

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSSIAI---IHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +  +   +HG  S
Sbjct: 212 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGVVATALHGDKS 271

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             ++E+ +  FKNG  ++LIAT ++  GI +    ++I
Sbjct: 272 QTEREAALAEFKNGLTQVLIATDLLARGIHIEQLPVVI 309


>gi|254457568|ref|ZP_05070996.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacterales
           bacterium GD 1]
 gi|207086360|gb|EDZ63644.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacterales
           bacterium GD 1]
          Length = 1646

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 153/366 (41%), Gaps = 53/366 (14%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLV-ALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           +DI+      + +L IL    G GKT    + A+  A    G  V+++P+  L + H + 
Sbjct: 279 RDIIASALGSDSILTILP--TGGGKTFTFQMPALIKAKAYKGLTVVISPLQALMKNHVDS 336

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII-IGTHALFQDSI----QYYKL 395
            K   QN  ++   I+G +    R   +  + +G   I+ I   AL  +S+    Q   +
Sbjct: 337 FKDANQNFSVVA--ISGYLSPIERMNIITEVENGVVDILYIAPEALRSNSVFKALQKRII 394

Query: 396 ILVIVDEQHRFG------------VQQRLKLTQKATAPH----VLLMTATPIPRTL---- 435
              ++DE H F             V   +K  ++++       V   TAT  P  L    
Sbjct: 395 ERFVIDEAHCFSSWGHDFRHDYYFVANSIKELEESSEFQPKIPVSCFTATAKPEVLKDIK 454

Query: 436 -VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KVVLSEGKKAYWI----- 488
                  DI++ +     + R  ++   I +N   +  E+L K ++  GKK   I     
Sbjct: 455 QYFADKLDIELKEFI-ASSKRYNLEYRAIEVNSKKDKYEQLIKELMRIGKKPTIIYIPQN 513

Query: 489 ---CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543
              C ++ E    + R  +   + + E F S I   I  G+    DK ++++ F +    
Sbjct: 514 ARECRELSETLNHDER--LHELDLVIEPFYSKIDDEIESGKREGRDKGAILNDFIDNKID 571

Query: 544 LLIATTVIEVGIDVVDASIII-IENAEHFGLAQLHQLRGRVGRGEEI-SSCILLYHPPLS 601
           ++IATT   +GID  D   +I  E ++   L    Q  GR  R +++ + CI+LY    S
Sbjct: 572 IVIATTAFGMGIDKPDIQTVIHYEQSD--SLESYLQESGRGARSDKLKAECIVLY----S 625

Query: 602 KNSYTR 607
           K+ + R
Sbjct: 626 KDDFNR 631


>gi|262169246|ref|ZP_06036939.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262022527|gb|EEY41235.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
          Length = 406

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 119/278 (42%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E + +      +    + G
Sbjct: 44  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCG 103

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +  ++ AL        +I++ T      L Q  ++  ++  +++DE  R        
Sbjct: 104 GVDKTEQQNALAE----NPNILVATTGRLFDLTQSGLRLNRVTTLVLDEADR-------- 151

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 152 LLDMGFWPQVQALASQTAGVRQTVMCSATFSDDLKLKTQQLMRVPTQVSANPENSINQAV 211

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +      +HG  S
Sbjct: 212 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKS 271

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             ++E+ +  FKNG+ ++LIAT ++  GI +    ++I
Sbjct: 272 QSEREAALAEFKNGSTQVLIATDLLARGIHIEQLPVVI 309


>gi|185134419|ref|NP_001117665.1| Vasa [Oncorhynchus mykiss]
 gi|6521014|dbj|BAA88059.1| Vasa [Oncorhynchus mykiss]
          Length = 647

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 80/386 (20%), Positives = 151/386 (39%), Gaps = 66/386 (17%)

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           E  + + + RNI  S  K      K  +  ++    ++   Q   GSGKT   L+ +   
Sbjct: 215 EAALCESLNRNISKSGYKKPTPVQKHGIPIIAAGRDLMACAQ--TGSGKTAAFLLPILQQ 272

Query: 318 VEAGGQA------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           +   G A            +I+AP   L  Q Y   +K+   T +   ++ G +   H  
Sbjct: 273 LMVDGVAASQFSEIQEPEVIIVAPTRELINQIYMEARKFAHGTCVRPVVVYGGISTGH-- 330

Query: 366 KALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
             +  I  G  +++  T     D      I   KL  +++DE  R        +      
Sbjct: 331 -TIREILKG-CNVLCATPGRLMDIIGRGKIGLSKLRYLVLDEADR--------MLDMGFE 380

Query: 421 PHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK--------------PAGRKPIKT 460
           P +  +  +P IP     +TL+ ++    DI K+                       ++ 
Sbjct: 381 PAMRKLVGSPGIPAKEDRQTLMFSATYPEDIQKLAADFLKKDYLFLAVGVVGGACSDVEQ 440

Query: 461 VIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           V++ + +    D+++E LK   SE    +     +E K++++F   +  F    +  T+S
Sbjct: 441 VVVQVTKFSKRDQLLEVLKTTGSERTMVF-----VETKRQADF---IATFLCREKVNTTS 492

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I   HG     ++E  +  F++G C +L+AT+V   G+D+ D   I+  +  +     +H
Sbjct: 493 I---HGDREQREREQALGDFRSGRCPVLVATSVAARGLDIKDVQHIVNFDLPNNIDEYVH 549

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKN 603
           ++ GR GR       +  + P    N
Sbjct: 550 RI-GRTGRCGNTGRAVCFFDPGADGN 574


>gi|327485960|gb|AEA80366.1| ATP-dependent RNA helicase VCA0990 [Vibrio cholerae LMA3894-4]
          Length = 406

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 119/278 (42%), Gaps = 25/278 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E + +      +    + G
Sbjct: 44  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCG 103

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + +  ++ AL        +I++ T      L Q  ++  ++  +++DE  R        
Sbjct: 104 GVDKTEQQNALAE----NPNILVATTGRLFDLTQSGLRLNRVTTLVLDEADR-------- 151

Query: 414 LTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L      P V  L + T   R  V+ S    D  K+  +   R P +    P N I++ +
Sbjct: 152 LLDMGFWPQVQALASQTAGVRQTVMCSATFSDDLKLKAQQLMRVPTQVSANPENSINQAV 211

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++++G K   +   +++ +      F    E  +SL +    +      +HG  S
Sbjct: 212 QETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKS 271

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             ++E+ +  FKNG+ ++LIAT ++  GI +    ++I
Sbjct: 272 QSEREAALAEFKNGSTQVLIATDLLARGIHIEQLPVVI 309


>gi|312215634|emb|CBX95586.1| similar to eukaryotic initiation factor 4A-I [Leptosphaeria
           maculans]
          Length = 396

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 147/364 (40%), Gaps = 89/364 (24%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR------------------------ 296
           +A K L ++P    +S      D   +M+ K  +LR                        
Sbjct: 1   MADKGLEDVPEGQIESNYDETTDSFDNMNLKAELLRGVYAYGFERPSAIQQRAIMPVIKG 60

Query: 297 ---ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              I Q   G+GKT    I+    +++     QA+I+AP   LAQQ  + +        +
Sbjct: 61  HDVIAQAQSGTGKTATFSISTLQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFMDV 120

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDE 402
                 G        KAL+        +++GT     D IQ   L        +L   DE
Sbjct: 121 QCHACIGGTSVRDDMKALQ----DGPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADE 176

Query: 403 QHRFGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
               G  +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P+
Sbjct: 177 MLSRGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPV 222

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE------------- 505
           + ++    + DE+         EG K ++I  + E+ K      + E             
Sbjct: 223 RILV----KKDELT-------LEGIKQFYIAVEKEDWKLDTLSDLYETVTITQAVIFCNT 271

Query: 506 --RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             + + L +  T+   +++ +HG M  I ++ +M  F++G+ ++LIAT ++  GIDV   
Sbjct: 272 RRKVDWLTDKLTARDFTVSAMHGDMDQIQRDVIMKEFRSGSSRVLIATDLLARGIDVQQV 331

Query: 561 SIII 564
           S++I
Sbjct: 332 SLVI 335


>gi|117617930|ref|YP_855071.1| ATP-independent RNA helicase DbpA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559337|gb|ABK36285.1| ATP-independent RNA helicase DbpA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 458

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 132/324 (40%), Gaps = 42/324 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I +   GSGKT    + + A ++      QA+++ P   LA Q    I++  +   N ++
Sbjct: 44  IAKAKTGSGKTAAFGLGLLANLDVNRLEVQALVLCPTRELADQVATEIRRLARTLPNVKL 103

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR 405
           +   + G  P A +   L       AHI +GT       L Q +++   L  +++DE  R
Sbjct: 104 VT--LCGGTPTAPQSATLSF----GAHIAVGTPGRILKHLEQGTLELDGLKTLVLDEADR 157

Query: 406 -----FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
                FG      ++        LL +AT  P  +   S G             R P++ 
Sbjct: 158 MLDMGFGEDINRVISHAPRDRQTLLFSAT-YPEGIAQMSRG-----------VQRNPVEV 205

Query: 461 VIIPINRIDEVIERLKVVLSEGKKA---YWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
            +  ++  D  IE+    +  G++     W+    +      F +     N + +H  + 
Sbjct: 206 SVESLHE-DSAIEQKLYEVPAGQRLDALGWLLSHYQPSSCVVFCNTKRACNDVADHLAAK 264

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             S   ++G +   +++ V+  F NG+  +L+AT V   G+D+ +   +I     +    
Sbjct: 265 GFSALALNGDLEQRERDQVLVRFANGSATILVATDVAARGLDIKELGAVINYELTYDPEV 324

Query: 575 QLHQLRGRVGRGEEISSCILLYHP 598
            +H++ GR GR  +    + LY P
Sbjct: 325 HVHRI-GRTGRAGQQGLALSLYQP 347


>gi|206562042|ref|YP_002232805.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia J2315]
 gi|198038082|emb|CAR54030.1| ATP-independent RNA helicase [Burkholderia cenocepacia J2315]
          Length = 465

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 138/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+I+ P   LA Q  + +++  +  + + V
Sbjct: 48  IAQAKTGSGKTAAFSLALLARLDARRFDVQAMILCPTRELADQVAQEVRRLARAEENVKV 107

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHI++GT     D +    L L     +++DE  R  
Sbjct: 108 LTLCGGTPMRPQAQSLE---HG-AHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRM- 162

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               L +        V  M  T   +TL+ ++     I+K++++   R P K + +    
Sbjct: 163 ----LDMGFFDDIAKVARMCPT-TRQTLLFSATYPDGIAKLSQQFL-RNP-KEIKLAERH 215

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 216 DDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 275

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 276 -HGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI- 333

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 334 GRTGRADQ 341


>gi|327400905|ref|YP_004341744.1| DEAD/DEAH box helicase domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327316413|gb|AEA47029.1| DEAD/DEAH box helicase domain protein [Archaeoglobus veneficus
           SNP6]
          Length = 389

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 123/274 (44%), Gaps = 26/274 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           + Q + GSGKTL   I +  A E G   QA+++ P   LA Q     ++++++  + +  
Sbjct: 44  VAQSETGSGKTLAFAIPIIEAAETGKGIQALVLTPTRELANQIENEFRRFSRHKGLRIAN 103

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR---F 406
           I G +P   + + L R     A +++GT     D     ++ + ++   ++DE  R    
Sbjct: 104 IHGGVPIEPQIRDLRR-----ADVVVGTPGRLLDHVRRKTVDFSRVEYFVIDEADRMLDM 158

Query: 407 GVQQRLKLTQKAT--APHVLLMTATPIPRTLVLTSLGDIDISKI-TEKPAGRKPIKTVII 463
           G    +K   + T      LL +AT  P    L S    +   I T++    K +     
Sbjct: 159 GFIDDVKAIMRCTPKTRQSLLFSATIPPEVRALASRYMKNPKTIRTKELVDPKLLNQYYY 218

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
            ++  ++    + ++  E  K   +   +  +K S+   +V + N     F +S  ++HG
Sbjct: 219 DVDDSEKFSMLVHLLRKENPKKALVFTNM--RKTSD---IVAK-NLFMHGFKAS--VLHG 270

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            ++   ++ +M+ F+ G  ++L+AT V   G+DV
Sbjct: 271 GLTQSKRDRMMERFRKGEIRVLVATDVASRGLDV 304


>gi|302891875|ref|XP_003044819.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256725744|gb|EEU39106.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 551

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 145/344 (42%), Gaps = 51/344 (14%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +     + A        G   +++AP   LA Q  + I K+ ++++I 
Sbjct: 180 AETGSGKTLTYCLPSIVHINAQPLLAPGDGPIVLVLAPTRELAVQIKQEIDKFGRSSRIR 239

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF 406
              + G +P+  + + L R       + I T     D ++  K  L     +++DE  R 
Sbjct: 240 NTCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRM 295

Query: 407 ---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KI 448
              G +             R  L   AT P  +   AT   +  +  ++G +D++   +I
Sbjct: 296 LDMGFEPQIRKIISQIRPDRQTLMWSATWPKEVRALATDFLQDFIQVNIGSMDLAANHRI 355

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           T+       I  V+  + + D +I+ L+ V+   +    I    +   +      + RF 
Sbjct: 356 TQ-------IVEVVTDMEKRDRMIKHLEKVMENKENKILIFVGTKRVADD-----ITRF- 402

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L +    +++I HG     +++ V+D FK+    +++AT V   GIDV + + ++  + 
Sbjct: 403 -LRQDGWPALSI-HGDKQQNERDWVLDQFKSAKSPIMVATDVASRGIDVRNITHVLNYDY 460

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR GR     + I  +     K +   ++VL+
Sbjct: 461 PNNSEDYIHRI-GRTGRAGAKGTAITFFTTDNQKQARDLVNVLQ 503


>gi|222153348|ref|YP_002562525.1| RNA helicase [Streptococcus uberis 0140J]
 gi|222114161|emb|CAR42666.1| putative RNA helicase [Streptococcus uberis 0140J]
          Length = 360

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 142/320 (44%), Gaps = 51/320 (15%)

Query: 302 VGSGKTLVALIAMAAAVEA--GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            G+GKTL  L+     +++    Q +I+AP   LA Q +E  K++ +   +  +++   +
Sbjct: 44  TGTGKTLAYLLPSLLNIKSQKSQQLLILAPNTELAGQIFEVTKEWAEPINLTAQLLISGI 103

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKL 414
            Q   ++ +ER+  G   IIIGT     + IQ+ K+ +     +I+DE        +++ 
Sbjct: 104 SQ---KRQIERLKKG-PQIIIGTPGRVYELIQHKKVKMMSVDTIILDEYDELLSDSQIQF 159

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIE 473
            QK +  HV        PR   +     I +S   + P       T +I ++  D   IE
Sbjct: 160 VQKISH-HV--------PRDHQM-----IYMSATNKVPVQSLEKNTKVIDLSDQDLSAIE 205

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHE--------HFTSSIAIIH 522
              + + +  K   +      +K SN   FR++V  FNSL +         F  + A+  
Sbjct: 206 HFYLSVDKRDKVDLL------RKFSNLPDFRALV-FFNSLSDLGASEEKLQFNGASAV-- 256

Query: 523 GRMSDID---KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              SDI    ++++++ FK    KLL+AT ++  GID+ +   +I           +H+ 
Sbjct: 257 SLASDISVPFRKTILEKFKQHDIKLLLATDLVARGIDIDNLEYVINFEVARDKENYIHR- 315

Query: 580 RGRVGR-GEEISSCILLYHP 598
            GR GR G+      L+ HP
Sbjct: 316 AGRTGRMGKSGRVITLVSHP 335


>gi|75076425|sp|Q4R6M5|DDX5_MACFA RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|67969804|dbj|BAE01250.1| unnamed protein product [Macaca fascicularis]
          Length = 614

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 152/396 (38%), Gaps = 65/396 (16%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E   P NV   IA++        PT  Q       L  +     M+ + Q   GSGKTL 
Sbjct: 98  EANFPANVMDVIARQNFT----EPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLS 147

Query: 310 ALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L+     +          G   +++AP   LAQQ  +   +Y +  ++    I G  P+
Sbjct: 148 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 207

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ---- 409
             + + LER       I I T     D ++  K  L     +++DE  R    G +    
Sbjct: 208 GPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIR 263

Query: 410 --------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                    R  L   AT P  +   A    +  +  ++G +++S      A    ++ V
Sbjct: 264 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------ANHNILQIV 317

Query: 462 II--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517
            +   + + +++I  ++ ++SE           +E K   F     R + L         
Sbjct: 318 DVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELTRKMRRDGW 366

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG  S  ++  V++ FK+G   +LIAT V   G+DV D   +I  +  +     +
Sbjct: 367 PAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYI 426

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 427 HRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 461


>gi|15890807|ref|NP_356479.1| cold-shock dead-box protein A [Agrobacterium tumefaciens str. C58]
 gi|15159093|gb|AAK89264.1| cold-shock dead-box protein A [Agrobacterium tumefaciens str. C58]
          Length = 615

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 140/325 (43%), Gaps = 43/325 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG----GQA-----VIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   IA+A  + +     GQA     + +AP   LA Q    ++   + 
Sbjct: 41  LVSAQTGSGKTVAFGIALATTLLSENTRFGQASAPLALAIAPTRELAMQVKRELEWLYEF 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             + +    G M   + R+ALER     AHI++GT     D I+   L L     V++DE
Sbjct: 101 AGVSIASCVGGMDIRNERRALER----GAHIVVGTPGRLCDHIKRNALDLSSIRAVVLDE 156

Query: 403 QHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGRK 456
                  G ++ L+  L +       L+ +AT +PR++  L      +  +I      ++
Sbjct: 157 ADEMLDLGFREDLEFILEESPDDRRTLMFSAT-VPRSIAKLAESYQKNAVRIATASEQKQ 215

Query: 457 PIKT-----VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            +       ++ P +R + +I  L+    E + A   C         + R+ V    +  
Sbjct: 216 HVDIEYRALLVSPSDRENAIINALR--FYEARNAIVFC---------STRAAVNHLTARL 264

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            +   S+  + G ++  ++   + + ++G  ++ +AT V   GID+    ++I  +    
Sbjct: 265 NNRGFSVVALSGELTQNERTHALQAMRDGRARVCVATDVAARGIDLPGLELVIHADLPTN 324

Query: 572 GLAQLHQLRGRVGR-GEEISSCILL 595
               LH+  GR GR G++  S I++
Sbjct: 325 SETLLHR-SGRTGRAGQKGVSAIVV 348


>gi|66767801|ref|YP_242563.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188990915|ref|YP_001902925.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
           campestris str. B100]
 gi|66573133|gb|AAY48543.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167732675|emb|CAP50869.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
           campestris]
          Length = 642

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 134/322 (41%), Gaps = 41/322 (12%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + +++ A   +   QA+++AP   LA Q  E  +KY +      V  
Sbjct: 52  QAQTGTGKTAAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLP 111

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF 406
           + G  P A +  AL+R      H+++GT     D +        Q   L+L   DE  R 
Sbjct: 112 VYGGQPYAQQLSALKR----GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRM 167

Query: 407 G----VQQRLK-LTQKATAPHVLLMTAT--PIPRTLVLTSLGD---IDISKITEKPAGRK 456
           G    V+  LK L +K     V L +AT  P  R +  T L D   + I+  T   A  +
Sbjct: 168 GFIDDVEAVLKKLPEKR---QVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIR 224

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
                +  ++++D +   L+V   +G   +           +  ++  E      +    
Sbjct: 225 QRYWWVSGLHKLDALTRILEVEPFDGMIIF-----------ARTKAATEELAQKLQARGL 273

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           + A I+G M    +E  +   K+G   +L+AT V   G+DV   S ++  +  +   + +
Sbjct: 274 AAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYV 333

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           H++ GR GR       IL   P
Sbjct: 334 HRI-GRTGRAGRNGDAILFVTP 354


>gi|311271292|ref|XP_003133100.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Sus scrofa]
          Length = 738

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 179 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITKK 238

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     +  I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 239 LSVAC-FYGGTSYQSQ----INHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 292

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 293 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 347

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 348 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 401

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 402 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 457

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 458 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 495


>gi|170578338|ref|XP_001894368.1| ATP-dependent helicase DDX48 [Brugia malayi]
 gi|158599081|gb|EDP36794.1| ATP-dependent helicase DDX48, putative [Brugia malayi]
          Length = 399

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 145/340 (42%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    IA+  +++      QA+I++P
Sbjct: 54  PSAIQQRAIKQIV-----KGRDV-IAQAQSGTGKTATFSIAVLQSLDISLRETQALILSP 107

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +      G        + + ++ +GQ H++ GT     D 
Sbjct: 108 TRELAVQIQKVVLALGDYLNVQCHACIGGTNVG---EDIRKLDYGQ-HVVSGTPGRVFDM 163

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G +++L    +   P   V+L++AT     L +TS
Sbjct: 164 IRRRNLRTRSIKMLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTS 223

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGKKA 485
               D  +I  K      + IK   + ++R +   + L             +  +  +K 
Sbjct: 224 KFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLCDLYDTLTITQAVIFCNTRRKV 283

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ KE+NF                +++ +HG M   +++++M  F+ G  +LL
Sbjct: 284 DWLA---EKLKEANF----------------TVSSMHGEMEQKERDAIMKEFRGGASRLL 324

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I+T V   G+D+   S+++  +  +     +H++ GR GR
Sbjct: 325 ISTDVFARGLDIPQVSLVVNYDLPNNRELYIHRI-GRSGR 363


>gi|195434729|ref|XP_002065355.1| GK14711 [Drosophila willistoni]
 gi|194161440|gb|EDW76341.1| GK14711 [Drosophila willistoni]
          Length = 425

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 123/291 (42%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q    +    +  ++   
Sbjct: 93  IAQAQSGTGKTATFSIAILQQIDTTSRECQALILAPTRELATQIQRVVMALGEYMKVHSH 152

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-------QYYKL-ILVIVDEQHR 405
              G      R  A  RI     H+++GT     D I       Q  KL +L   DE   
Sbjct: 153 ACIGGTNV--REDA--RILESGCHVVVGTPGRVYDMINRKVLRTQSIKLFVLDEADEMLS 208

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + +++   K   P   V+L++AT +P  ++  S           +   R+P+    I
Sbjct: 209 RGFKDQIQDVFKMLPPDVQVILLSAT-MPHDVLEVS-----------RCFMREPVS---I 253

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      K+  W    + +  ++          N R  V++      +
Sbjct: 254 LVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSN 313

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   D+E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 314 HNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 364


>gi|167584515|ref|ZP_02376903.1| ATP-dependent RNA helicase DbpA [Burkholderia ubonensis Bu]
          Length = 464

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 136/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + +++  +  + + V
Sbjct: 48  IAQAKTGSGKTAAFSLALLARLDARRFDVQAMVLCPTRELADQVAQEVRRLARAEENVKV 107

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHI++GT     D +    L L     +++DE  R  
Sbjct: 108 LTLCGGTPMRPQTQSLE---HG-AHIVVGTPGRIMDHLDRGTLALDALNTLVLDEADRML 163

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K      +     P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 164 DMGFFDDIAK------VARQCPPTRQTLLFSATYPDGIAKLSQQFL-RNP-KEVKLAERH 215

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 216 DDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 275

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 276 -HGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI- 333

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 334 GRTGRADQ 341


>gi|71800669|gb|AAZ41384.1| Ded1-like DEAD-box RNA helicase [Chironomus tentans]
          Length = 776

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 123/294 (41%), Gaps = 53/294 (18%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q YE  KK++  +++   ++ G    + + + L+R      H+I+ T 
Sbjct: 353 GLVLAPTRELATQIYEEAKKFSYRSRMRPAVLYGGNNTSEQMRELDR----GCHLIVATP 408

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF---GVQ----------------QRLKLTQKAT 419
               D I   K+ L     +++DE  R    G +                QR  L   AT
Sbjct: 409 GRLDDIINRGKIGLENLRFLVLDEADRMLDMGFEPQIRHIIENRDMPPTGQRQTLMFSAT 468

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV- 478
            P  +   A+      +  ++G +  +         + I   I+ +N  ++    L ++ 
Sbjct: 469 FPKNIQELASDFLSNYIFLAVGRVGSTS--------ENITQTILWVNENEKRSYLLDLLS 520

Query: 479 -LSEGKKAYWICPQ------IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
            L EG   Y   P       +E KK ++    +E F   ++H  +SI   HG  S  ++E
Sbjct: 521 RLREGSPDY--SPDSLTLIFVETKKGAD---ALEEFLYQNKHPVTSI---HGDRSQRERE 572

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
             +  F++G C +L+AT V   G+D+     +I  +        +H++ GR GR
Sbjct: 573 DALKCFRSGDCPILVATAVAARGLDIPHVKHVINYDLPSDVEEYVHRI-GRTGR 625


>gi|157278092|ref|NP_001098146.1| VASA [Oryzias latipes]
 gi|14522857|dbj|BAB61047.1| VASA [Oryzias latipes]
          Length = 617

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/385 (20%), Positives = 160/385 (41%), Gaps = 74/385 (19%)

Query: 258 EGKIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           E K+ + +  NI  S    PT  Q+  +  I    S    ++   Q   GSGKT   L+ 
Sbjct: 185 EAKLCESLENNISRSGYVKPTPVQKYGLPII----SAGRDLMACAQ--TGSGKTAAFLLP 238

Query: 314 MAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           +   + A G            +AVI+AP   L  Q Y+  +K++  T +   ++ G +  
Sbjct: 239 ILQQLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQEARKFSFGTCVRPVVVYGGVNT 298

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQ 416
            ++ + +E+      +++ GT     D I   K+ L     +++DE  R        +  
Sbjct: 299 GYQMREIEK----GCNVLCGTPGRLLDMIGRGKVGLSKVRHLVLDEADR--------MLD 346

Query: 417 KATAPHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK--------------PAGRK 456
               P +  +  +P +P     +TL+ ++    DI ++                      
Sbjct: 347 MGFEPDMRRLVGSPGMPSKEERQTLMFSATFPEDIQRLAADFLKVDYLFVAVGVVGGACT 406

Query: 457 PIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            ++   + +   N+ +++++ L+ + SE    +     +E K++++F   +  F    + 
Sbjct: 407 DVEQTFLQVTKFNKREQLLDLLRTIGSERTMVF-----VETKRQADF---IAAFLCQEKV 458

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
            T+SI   HG     ++E  +  F++G C +L+AT+V   G+D+ D   ++  +  +   
Sbjct: 459 PTTSI---HGDREQREREKALADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTID 515

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
             +H++ GR GR       +  Y P
Sbjct: 516 DYVHRI-GRTGRCGNTGRAVSFYDP 539


>gi|332231227|ref|XP_003264799.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Nomascus
           leucogenys]
          Length = 644

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 138/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 124 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 181

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 182 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 237

Query: 401 DEQHRF---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G +             R  L   AT P  +   A    R     ++G++++
Sbjct: 238 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 297

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 298 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 339

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 340 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 399

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 400 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 451


>gi|307352826|ref|YP_003893877.1| DEAD/DEAH box helicase domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307156059|gb|ADN35439.1| DEAD/DEAH box helicase domain protein [Methanoplanus petrolearius
           DSM 11571]
          Length = 536

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 138/317 (43%), Gaps = 55/317 (17%)

Query: 299 QGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP---IGILAQQHYEFIKKYTQNTQIIV 352
           Q   G+GKT    I +   +E      Q+++++P   + I   + +  + KY ++ +++ 
Sbjct: 48  QAQTGTGKTAAFAIPLIEKIEPEKCSVQSIVLSPTRELTIQISEEFNRLLKYRKDIRVL- 106

Query: 353 EIITGNMPQAHRRKALERIAH---GQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
                     +  +A+ER  H      HIIIGT     D ++   L L     V++DE  
Sbjct: 107 --------PVYGGQAIERQLHELKKGVHIIIGTPGRVMDHMKRGTLSLSGIKTVVLDEAD 158

Query: 405 RF---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +    G ++ ++  L++       +L +AT +P+ +       + ISK  +K    KP  
Sbjct: 159 QMLEMGFREDMEEILSKAPGERQTILFSAT-MPKPI-------LKISKSFQK----KPEF 206

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEH 513
             I P      +IE+  + + E  K   +C  I+           N +  V+  + +   
Sbjct: 207 VTINPGQLTVPLIEQKYLEVREKDKLEVLCRLIDINSSDLSMIFCNTKKAVDELSEMLRS 266

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAE 569
                  +HG M    ++ VM  F++G+  +LIAT V   GID+ D  ++    + ++ E
Sbjct: 267 RGYFAEGLHGDMKQQQRDRVMSRFRSGSIDILIATDVAARGIDIDDIDVVYNYDVPQDVE 326

Query: 570 HFGLAQLHQLRGRVGRG 586
           ++    +H++ GR GR 
Sbjct: 327 YY----IHRI-GRTGRA 338


>gi|254496623|ref|ZP_05109488.1| primosomal protein N (replication factor Y) [Legionella drancourtii
           LLAP12]
 gi|254354145|gb|EET12815.1| primosomal protein N (replication factor Y) [Legionella drancourtii
           LLAP12]
          Length = 726

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 23/211 (10%)

Query: 268 NIPFSPTKS----QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           + P SP  S    Q  A+  I + + Q    L  LQG  GSGKT V L  +A  ++ G Q
Sbjct: 188 DTPMSPALSLNPEQAEAVTAISEQLQQYQCFL--LQGVTGSGKTEVYLQVIANVLQQGKQ 245

Query: 324 AVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            +++ P IG+  Q    F  ++ Q     + +I  ++ ++ R+ A +     +  ++IGT
Sbjct: 246 VLVLVPEIGLTPQLLARFTARFNQ----AIAVIHSSLNESERQIAWQLAKENKVKMVIGT 301

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQR--LKLTQKATA---PH-----VLLMTATPIP 432
            A     +    L L+++DE+H   ++Q   ++ + + TA    H     ++L +ATP  
Sbjct: 302 RAAIFTPMP--DLGLIVIDEEHDTSLKQMEGVRYSARDTALMRAHLANIPIILGSATPSL 359

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            ++  +  G   + ++T K     P+   +I
Sbjct: 360 ESVHNSKQGKYKLLRLTHKALSTTPLHYQLI 390


>gi|254519975|ref|ZP_05132031.1| ATP-dependent RNA helicase DeaD [Clostridium sp. 7_2_43FAA]
 gi|226913724|gb|EEH98925.1| ATP-dependent RNA helicase DeaD [Clostridium sp. 7_2_43FAA]
          Length = 481

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 148/350 (42%), Gaps = 39/350 (11%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVE 319
           K L+N+ F  P++ Q+  I  IL      ++   +++   GSGKT    + L  +    E
Sbjct: 17  KALKNLGFEKPSEVQQEVIPYIL------DKKDLVVKSQTGSGKTASFGIPLCELVNVEE 70

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+ P   LA Q  E I    +  ++    I G  P   + + L++    + HI+
Sbjct: 71  NKVKALILVPTRELAIQVKEDISNIGRLKKVRCAAIFGKQPFNEQIRELKQ----RVHIV 126

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTAT 429
            GT     D I+   L +     VI+DE  +     F  Q    L +   + +  L +AT
Sbjct: 127 CGTPGRVIDHIERGNLDINDIDFVIIDEADKMLNMGFIDQITDVLDKLPQSKNTALFSAT 186

Query: 430 PIPRT---LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKA 485
            IP+    L    + +  +  I  K   R  I      ++R ++    LK + +   + A
Sbjct: 187 -IPKEIEGLYSNYMNNPTVLNIRSKVFNRDKISEKYFNVDREEKFKYLLKSLYAFTDESA 245

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              C         N +  V   +SL +    S+  +HG M   D+ + M++FKN   K+L
Sbjct: 246 IIFC---------NTKDSVRNLSSLLKKEKISVKELHGDMDQKDRLATMENFKNKEFKVL 296

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +AT V   GI +   + +          + +H++ GR GRG++    I L
Sbjct: 297 VATDVAARGIHINHITNVFNYEVPIEKESYVHRI-GRSGRGDKKGLAISL 345


>gi|149038674|gb|EDL92963.1| rCG22084, isoform CRA_b [Rattus norvegicus]
          Length = 689

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 137/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 175 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 234

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     + +I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 235 LNVAC-FYGGTSYQSQ----INQIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 288

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               +     P  LL +AT       + +  + +   
Sbjct: 289 -----VDQMLDLGFAEQVEDIIHESYKSDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 343

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 344 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 397

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 398 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 453

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      C+  Y P
Sbjct: 454 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICVCFYQP 491


>gi|148977248|ref|ZP_01813875.1| primosome assembly protein PriA [Vibrionales bacterium SWAT-3]
 gi|145963530|gb|EDK28793.1| primosome assembly protein PriA [Vibrionales bacterium SWAT-3]
          Length = 733

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 22/213 (10%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L N    P  ++E AI  I    SQ +    +L+G  GSGKT V L  +   ++ G QA+
Sbjct: 191 LENDQDKPKLNEEQAIA-IATVNSQNSFGCFLLEGVTGSGKTEVYLNMIKPILDQGKQAL 249

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH- 383
           ++ P IG+  Q     I ++ +   + VE+I   +  + R  A        A I+IGT  
Sbjct: 250 VLVPEIGLTPQT----INRFKRRFNVPVEVIHSGLNDSERLNAWLSARDKIAGIVIGTRS 305

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-----------TQKATAPHVLLMTATPIP 432
           ALF     +  L ++IVDE+H    +Q+  L             KA  P V+L +ATP  
Sbjct: 306 ALF---TPFADLGIIIVDEEHDASYKQQDSLRYHARDVAIMRAHKAQIP-VVLGSATPAF 361

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            TL    +G      +T +     P    ++ +
Sbjct: 362 ETLHNAQIGKYSHLTLTSRAGVALPTTNKVLDV 394


>gi|84390843|ref|ZP_00991535.1| primosome assembly protein PriA [Vibrio splendidus 12B01]
 gi|84376646|gb|EAP93523.1| primosome assembly protein PriA [Vibrio splendidus 12B01]
          Length = 733

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 93/213 (43%), Gaps = 22/213 (10%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L N    P  + E AI  I    SQ +    +L+G  GSGKT V L  +   ++ G QA+
Sbjct: 191 LENEQDKPKLNAEQAIA-IATVNSQTDFSCFLLEGVTGSGKTEVYLNMIKPILDQGKQAL 249

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH- 383
           ++ P IG+  Q     I ++ +   + VE+I   +  + R  A        A I+IGT  
Sbjct: 250 VLVPEIGLTPQT----INRFKRRFNVPVEVIHSGLNDSERLNAWLSARDKIAGIVIGTRS 305

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-----------TQKATAPHVLLMTATPIP 432
           ALF     +  L ++IVDE+H    +Q+  L             KA  P V+L +ATP  
Sbjct: 306 ALF---TPFADLGIIIVDEEHDASYKQQDSLRYHARDVAIMRAHKAQIP-VVLGSATPAF 361

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            TL    +G      +T +     P    ++ +
Sbjct: 362 ETLHNAQIGKYSYLTLTSRAGVALPTTNKVLDV 394


>gi|331701499|ref|YP_004398458.1| primosomal protein N' [Lactobacillus buchneri NRRL B-30929]
 gi|329128842|gb|AEB73395.1| primosomal protein N' [Lactobacillus buchneri NRRL B-30929]
          Length = 799

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 5/141 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF     Q++A+  I Q +  K   + +L+G  GSGKT V L ++A A+E G  A+++ P
Sbjct: 261 PFKLQPDQQAAVDSIEQAVVHKKDQVFLLEGVTGSGKTEVYLQSIAHALELGRTALMLVP 320

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q    I+    +    V ++   M    R    +RI  G+A +++G  +     
Sbjct: 321 EITLTPQIVGRIRSRFGDQ---VAMLHSAMSSGERYDEWQRINQGKAKVVVGVRSAVFAP 377

Query: 390 IQYYKLILVIVDEQHRFGVQQ 410
           +    + L+I+DE+H    +Q
Sbjct: 378 LS--NIGLIIMDEEHDSSYKQ 396


>gi|226949308|ref|YP_002804399.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226844168|gb|ACO86834.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 376

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 167/382 (43%), Gaps = 57/382 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           PT  QE +I      M  KN    I +   G+GKTL  L+ M   +       Q +I+ P
Sbjct: 25  PTPIQEESI------MFIKNGNDVIAEAQTGTGKTLAFLLPMFENISPDINAIQGLIITP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA----- 384
              LA Q  E   K  +   + +    G      + K L+       H++I T       
Sbjct: 79  TRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLK----NNIHLVIATPGRLLDH 134

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDI 443
           L ++++ +  L  +++DE       + L +  K     ++    TP  R TL  ++  + 
Sbjct: 135 LNRNTLNFKDLKTLVLDE-----ADEMLLMGFKNDVRSII--ENTPRKRQTLCFSATMNS 187

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL---SEGKKAYWICPQIEEKKESNF 500
           ++ K+  K   R P    +I I + +  ++ +K VL   ++ +K   +C  ++E  E+ F
Sbjct: 188 EVKKLAYKNM-RDP---RLIIIEKEEVTLKNIKQVLIETTDRRKQEDLCKILDE--ENPF 241

Query: 501 RSVV-----ERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            +++      R ++L E       +   +HG ++   +E +M SFKN   + LIAT V  
Sbjct: 242 MAIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAA 301

Query: 553 VGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            G+D+   + +    I ENAE +    +H++ GR GR  E     L   P   K+  T L
Sbjct: 302 RGLDITGVTHVFNYDIPENAESY----IHRI-GRTGRAGEKGYTFLFVAP---KDEQT-L 352

Query: 609 SVLKNTEDGFLIAEEDLKQRKE 630
           S+++  E  F I+ + L   KE
Sbjct: 353 SIIER-EIKFKISRKTLTNSKE 373


>gi|193890969|gb|ACF28638.1| translation initiation factor 4A [Amphidinium carterae]
          Length = 331

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 126/310 (40%), Gaps = 39/310 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT   +I     V+      Q +I+AP   LA Q  + +        +   
Sbjct: 15  IGQAQSGTGKTATFVIGSLZRVDFRLRECQTLILAPTRELADQTNKVVLALGDYCNVQSH 74

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--YYK---LILVIVDEQHRF-- 406
              G    ++ + ++ R+  GQ H+++ T     D I   Y K   L+  I DE      
Sbjct: 75  ACVGG---SNYKDSISRLREGQ-HVVVATPGRVYDMINKGYLKVDHLLTFICDEADVMLS 130

Query: 407 -GVQQRLKLTQKATAP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            G + +L    K T P    V L +AT  P  L LTS               R P++ ++
Sbjct: 131 KGFKDQLYDIFK-TLPSDVQVCLFSATMAPEVLDLTS------------KFMRDPVRILV 177

Query: 463 IPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKK------ESNFRSVVERFNSLHEHFT 515
                  E I +  V +  E  K   +C   E          SN+R  V+          
Sbjct: 178 KKDELTLEGIHQYYVAIEKEDWKLDTLCDLYECVTISQCIIYSNYRRKVDSLAHELSKRD 237

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            +++IIH  +   ++  VM  F+NG  ++LI+T ++  GIDV   S++I  +        
Sbjct: 238 FAVSIIHADLDQEERNLVMKEFRNGATRVLISTDLLARGIDVQQVSLVINYDMPMDMENY 297

Query: 576 LHQLRGRVGR 585
           LH++ GR GR
Sbjct: 298 LHRI-GRSGR 306


>gi|22536473|ref|NP_687324.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
           2603V/R]
 gi|25010353|ref|NP_734748.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae NEM316]
 gi|76787716|ref|YP_329013.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909]
 gi|77404947|ref|ZP_00782048.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
 gi|77410606|ref|ZP_00786966.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|22533303|gb|AAM99196.1|AE014204_14 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 2603V/R]
 gi|23094705|emb|CAD45924.1| unknown [Streptococcus agalactiae NEM316]
 gi|76562773|gb|ABA45357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae A909]
 gi|77163321|gb|EAO74272.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|77176386|gb|EAO79154.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
          Length = 447

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 134/313 (42%), Gaps = 27/313 (8%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +   ++      Q VI AP   L  Q Y+  K+  ++++  + ++   
Sbjct: 47  TGSGKTHTFLLPIFEKLDESSDDVQVVITAPSRELGTQIYQATKQIAEHSEQEIRVVN-Y 105

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLK 413
           +    + + +E++   Q HI+IGT     D ++   L +      +VDE         L 
Sbjct: 106 VGGTDKLRQIEKLKVSQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTLDMGFLD 165

Query: 414 LTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
              K          +L+ +AT IP+ L         + K    P   K IKT  +  + I
Sbjct: 166 TVDKIAGSLPKDVQILVFSAT-IPQKLQPF------LKKYLTNPVMEK-IKTATVIADTI 217

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRM 525
           D  +   K    +  +   +   ++      F +  ER + LH + +S+   +A IHG +
Sbjct: 218 DNWLLSTKG-RDKNAQILELSKLMQPYLAMIFVNTKERADELHSYLSSNGLKVAKIHGGI 276

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +  +++ +M+  KN   + ++AT +   GID+   S +I +         +H++ GR GR
Sbjct: 277 APRERKRIMNQVKNLEFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGR 335

Query: 586 GEEISSCILLYHP 598
                + I LY P
Sbjct: 336 NGLSGTAITLYQP 348


>gi|328955216|ref|YP_004372549.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
           PW2]
 gi|328455540|gb|AEB06734.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
           PW2]
          Length = 618

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 159/374 (42%), Gaps = 61/374 (16%)

Query: 249 KEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +++G+P      I  K +R + ++ PT  Q ++I  +L     K  +L   Q   G+GKT
Sbjct: 60  EDLGLP-----DIILKAVRGLHYTTPTPVQAASIPSVLA----KRDILAAAQ--TGTGKT 108

Query: 308 LVALI-AMA-------------AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
              L+ AM+             +A   G + +I+ P   LAQQ      +    T+ I  
Sbjct: 109 AAFLLPAMSNLGHVVHQGRSRRSAEGRGPKMLIITPTRELAQQIDSVCTQIATRTKHIAV 168

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF-- 406
            + G +    ++ AL R       I++ T     D I        ++ ++++DE  R   
Sbjct: 169 TVVGGVGYNPQKSALRR----GCDILVATPGRLIDLIDQGVCNLSEVEILVIDEADRMLD 224

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKI-TEKPAGRKPIKTV- 461
            G    +K     T P    LL +AT   +TL   S+ D+    +  E  A      TV 
Sbjct: 225 MGFLPSVKQIVALTPPERQTLLFSATLDEKTL--GSIRDLVRDPVRVEIAAATSTADTVD 282

Query: 462 --IIPIN---RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             ++P++   + D ++E LK    EG     +  + + + +S  R +         H   
Sbjct: 283 QFVLPVSFDSKNDVLVEVLK---REGASRVIVFMRTKHRADSCCRRLT--------HAGI 331

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S A IHG  S   +E  + +F++G   +L+AT VI  GID+ D   ++  +     +  +
Sbjct: 332 SAAAIHGDRSQAQRERALKAFRDGRSDVLVATDVIARGIDISDVRYVVNFDVPGEPIDYI 391

Query: 577 HQLRGRVGRGEEIS 590
           H++ GR GR  E+ 
Sbjct: 392 HRI-GRTGRAGEVG 404


>gi|253698821|ref|YP_003020010.1| primosomal protein N' [Geobacter sp. M21]
 gi|251773671|gb|ACT16252.1| primosomal protein N' [Geobacter sp. M21]
          Length = 752

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 19/174 (10%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +P +P +S+  A+  +   +  +     +L G  GSGKT V L  +A A+ AG  A++M 
Sbjct: 217 LPLNPAQSE--ALTRLTASIKARAFSPFLLHGVTGSGKTEVYLQTIAVALAAGRSALVMV 274

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
           P   L  Q    + ++ +     + ++   +    R     RI  G+A I+IG   ALF 
Sbjct: 275 PEIALTPQ---LVGRFKRRFDCGIAVLHSGLSDGERYDEWRRIRRGEASIVIGARSALFA 331

Query: 388 DSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPI 431
              +   + +++VDE+H          R+  +    +  K     V+L +ATP+
Sbjct: 332 PLTE---VGVIVVDEEHEGSYKQSEGVRYNARDLALVRGKLAGGVVILGSATPL 382


>gi|166711384|ref|ZP_02242591.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 634

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 134/322 (41%), Gaps = 41/322 (12%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + +++ A   +   QA+++AP   LA Q  E  +KY +      V  
Sbjct: 52  QAQTGTGKTAAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLP 111

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF 406
           + G  P A +  AL+R      H+++GT     D +        Q   L+L   DE  R 
Sbjct: 112 VYGGQPYAQQLSALKR----GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRM 167

Query: 407 G----VQQRLK-LTQKATAPHVLLMTAT--PIPRTLVLTSLGD---IDISKITEKPAGRK 456
           G    V+  LK L +K     V L +AT  P  R +  T L D   + I+  T   A  +
Sbjct: 168 GFIDDVEAVLKKLPEKR---QVALFSATMPPAIRRIAQTYLKDPVEVTIAAKTTTSASIR 224

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
                +  ++++D +   L+V   +G   +           +  ++  E      +    
Sbjct: 225 QRYWWVNGLHKLDALTRILEVEPFDGMIIF-----------ARTKAATEELAQKLQARGM 273

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           + A I+G M    +E  +   K+G   +L+AT V   G+DV   S ++  +  +   + +
Sbjct: 274 AAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYV 333

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           H++ GR GR       IL   P
Sbjct: 334 HRI-GRTGRAGRTGDAILFVTP 354


>gi|148613856|ref|NP_001091974.1| probable ATP-dependent RNA helicase DDX17 isoform 3 [Homo sapiens]
          Length = 731

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 140/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 211 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 268

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 269 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 324

Query: 401 DEQHRF---GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G + +++            L   AT P  +   A    R     ++G++++
Sbjct: 325 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 384

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 385 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 426

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 427 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 486

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 487 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 538


>gi|119900267|ref|YP_935480.1| primosomal protein N' [Azoarcus sp. BH72]
 gi|119672680|emb|CAL96594.1| primosomal protein N' (Replication factor Y) [Azoarcus sp. BH72]
          Length = 723

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 26/219 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQG  GSGKT V L     A+ AGGQ +++ P   L  Q    + +   + Q++   + 
Sbjct: 213 LLQGVTGSGKTEVYLRLAERALAAGGQVLMLVPEIALTPQLERRVAERFPSAQVVS--LH 270

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH----------R 405
             + +  R +   +   GQA I++GT  A+F       +L L++VDE+H          R
Sbjct: 271 SALAEGARSRGFVQALEGQADIVLGTRLAVF---APLPRLGLILVDEEHDASYKQQEGVR 327

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           +  +       +     V+L +ATP   T      G   +  +      R+ +   + P+
Sbjct: 328 YSARDVAVWRARQRGVPVVLGSATPSLETWQHARQGRYGLLSLR-----RRAVAAALPPV 382

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
             +D   +RL   LS       +C  IE++ E   +S+V
Sbjct: 383 RYVDTRRQRLDEGLSAA-----LCQAIEQRLERGEQSLV 416


>gi|38201710|ref|NP_006377.2| probable ATP-dependent RNA helicase DDX17 isoform 1 [Homo sapiens]
 gi|110611789|gb|AAH00595.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
          Length = 729

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 140/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 211 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 268

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 269 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 324

Query: 401 DEQHRF---GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G + +++            L   AT P  +   A    R     ++G++++
Sbjct: 325 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 384

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 385 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 426

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 427 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 486

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 487 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 538


>gi|88705209|ref|ZP_01102920.1| primosomal protein N` [Congregibacter litoralis KT71]
 gi|88700299|gb|EAQ97407.1| primosomal protein N` [Congregibacter litoralis KT71]
          Length = 730

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 25/170 (14%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           ++ Q SA+  +  D    +    +LQG  GSGKT V L  +AA ++ G QA+++ P IG+
Sbjct: 201 SEEQGSAVAAVEWD----SFSCHLLQGVTGSGKTEVYLRLIAACLDRGEQALVLIPEIGL 256

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q     +K++    Q  V ++   +    R  A +    G A I++GT  A+F     
Sbjct: 257 TPQT----VKRFEARFQSPVAVLHSGLSDGQRFAAWQAAQSGTAGIVMGTRSAIF---TP 309

Query: 392 YYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATP 430
             +  L+IVDE+H    +Q+           +K  Q    P V+L +ATP
Sbjct: 310 LARPGLIIVDEEHDGSYKQQDGFRYAARDVAVKRAQLEGCP-VMLGSATP 358


>gi|294495366|ref|YP_003541859.1| ERCC4 domain protein [Methanohalophilus mahii DSM 5219]
 gi|292666365|gb|ADE36214.1| ERCC4 domain protein [Methanohalophilus mahii DSM 5219]
          Length = 754

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 16/140 (11%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIM-APIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G GKT+VAL+ MA+ +E  G+ V+M +P   L +QH  F  +        V   TGN+P
Sbjct: 39  TGLGKTIVALLVMASRLETTGKKVVMLSPTKPLVEQHAAFFSQMLNLKPEEVMTFTGNLP 98

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-FGVQQRLKL 414
            A R K  E+       +I+ T  + ++ +   ++ L     +  DE HR  G      +
Sbjct: 99  PAKREKMWEK-----GRVIVSTPQVIENDLLTKRISLRDVAHITFDEAHRAVGNYSYTYI 153

Query: 415 TQ----KATAPHVLLMTATP 430
            +    +A  P  L +TA+P
Sbjct: 154 AEEYFNQAKEPLCLAITASP 173


>gi|313893406|ref|ZP_07826978.1| primosomal protein N' [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442047|gb|EFR60467.1| primosomal protein N' [Veillonella sp. oral taxon 158 str. F0412]
          Length = 733

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 9/144 (6%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           NIP   T++Q++  + I + M+       +L G  GSGKT + L A A  +     A+I+
Sbjct: 202 NIPL--TQAQQAVYEPIQEAMNSHEHKTFLLHGVTGSGKTQLYLRATAKCISQDKTAIIL 259

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALF 386
            P  IL  Q    ++++ +     V +    +    R    ER+    +HIIIG   A+F
Sbjct: 260 VPEIILTDQ---IVRRFVETFGDEVVVFHSKLTVQQRNNNWERLRRKDSHIIIGARSAVF 316

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQ 410
             +     + L++VDE+H    +Q
Sbjct: 317 APA---EDIGLIVVDEEHDTSYKQ 337


>gi|228936735|ref|ZP_04099526.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228822944|gb|EEM68785.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 481

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 134/319 (42%), Gaps = 32/319 (10%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE-KPAG--RKPIKT 460
             F  Q    + +  T    +L +AT +P  +   S   +D+    E K AG     I+ 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPEDVEKLSRTYMDLPTYIEIKAAGITTDKIEH 219

Query: 461 VIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            +    R +E +  LK V + E   +  I  + +E  +  FR +  R N   +       
Sbjct: 220 TLFE-TREEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVFRQL-NRVNYPCDK------ 271

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      + +H+ 
Sbjct: 272 -IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRT 330

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       I    P
Sbjct: 331 -GRTGRAGNKGKAITFITP 348


>gi|153939716|ref|YP_001391033.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str.
           Langeland]
 gi|152935612|gb|ABS41110.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. Langeland]
 gi|295319089|gb|ADF99466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. 230613]
          Length = 421

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 159/336 (47%), Gaps = 46/336 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT+ Q  AI      ++ +N+ + I Q + G+GKTL  L+ +   +       QA+I+AP
Sbjct: 26  PTEIQAEAI-----PLAMENKDI-IGQSETGTGKTLAYLLPIFEKITTEKREMQAIILAP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q    IK  + N+ + V+ +   + +A+ ++ +E++   + HII+G+     + 
Sbjct: 80  THELAMQINNEIKNISSNSNMDVKSM-AIIGEANIKRQIEKLKE-KPHIIVGSPGRILEL 137

Query: 390 IQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTATPIPRTLVLTS 439
           I+  K+       +++DE  +   +  LK+ ++          ++L +AT    TL +  
Sbjct: 138 IKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLMLFSATITESTLNIAK 197

Query: 440 --LGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKVVLSEGKKAYWICPQIEE 494
             + D ++ K+ EK    + IK + I      RI E++ +L +  +  K+A     + EE
Sbjct: 198 DLMKDSEVVKVKEKNTVNENIKHLYITGEHRERI-EILRKL-IAATNPKRAIVFINRNEE 255

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            + +  +        L  H   +  I +G      ++  ++ F++G  ++L+++ +   G
Sbjct: 256 IELTTLK--------LQYHKIKAYGI-YGAAEKEQRKKALEDFRSGKVQILVSSDLSARG 306

Query: 555 IDVVDASII----IIENAEHFGLAQLHQLRGRVGRG 586
           +DV D + I    + EN + +    LH++ GR GR 
Sbjct: 307 LDVKDVTHIFNLDLPENPKEY----LHRV-GRTGRA 337


>gi|331269837|ref|YP_004396329.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           botulinum BKT015925]
 gi|329126387|gb|AEB76332.1| DEAD/DEAH box helicase domain protein [Clostridium botulinum
           BKT015925]
          Length = 370

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 142/351 (40%), Gaps = 57/351 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +PT  QE +IK +     ++N +  I +   G+GKT   L+ M   +       Q +I+ 
Sbjct: 23  TPTPIQEKSIKLV----KEENDV--IAEAQTGTGKTFAFLLPMFENMSPNINTVQGLIVT 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  +   + +    G    + + K L+    G  H++I T     D
Sbjct: 77  PTRELAIQITEEANKLKKAKDLNILAAYGGKDISSQLKKLK----GNIHLVIATPGRLLD 132

Query: 389 -----SIQYYKLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
                +I   KL  +++DE  +         V++ +K T K         T     + L 
Sbjct: 133 HIKRNTINLQKLKTIVLDEADQMLYMGFKNEVEEIMKHTSKKKQILCFSATMNSQVKKLA 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              + +  I  I  +    K IK  ++      E  +R        +K   +C  ++E  
Sbjct: 193 YRYMKEPKIVSIQSEEVTLKNIKQAVV------ETTDR--------RKQDALCKVLDEDN 238

Query: 497 E-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      R V    ++LHE    +   IHG ++   +E VM  FK    + LIAT 
Sbjct: 239 PFMAIIFCRTKRRVDNLEDALHER-GYNCKKIHGDLNQAKRERVMKEFKKMDIQYLIATD 297

Query: 550 VIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGR-GEEISSCILL 595
           V   G+D+   + +    I ENAE +    +H++ GR GR GEE  +C+ +
Sbjct: 298 VAARGLDISGVTHVYSYDIPENAESY----IHRI-GRTGRAGEEGETCLFI 343


>gi|153938593|ref|YP_001391335.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str.
           Langeland]
 gi|152934489|gb|ABS39987.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. Langeland]
 gi|295319364|gb|ADF99741.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. 230613]
          Length = 376

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 151/350 (43%), Gaps = 52/350 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           PT  QE +I      M  KN    I +   G+GKTL  L+ M   +       Q +I+ P
Sbjct: 25  PTPIQEESI------MLIKNGNDVIAEAQTGTGKTLAFLLPMFENISPDINAIQGLIITP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA----- 384
              LA Q  E   K  +   + +    G      + K L+       H++I T       
Sbjct: 79  TRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLK----NNIHLVIATPGRLLDH 134

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDI 443
           L ++++ +  L  +++DE       + L +  K     ++    TP  R TL  ++  + 
Sbjct: 135 LNRNTLNFKDLKTLVLDE-----ADEMLLMGFKNDVRSII--ENTPRKRQTLCFSATMNS 187

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL---SEGKKAYWICPQIEEKKESNF 500
           ++ K+  K   R P K +II    +   ++ +K VL   ++ +K   +C  ++E  E+ F
Sbjct: 188 EVKKLAYKNM-RDP-KLIIIEKEEV--TLKNIKQVLIETTDRRKQEDLCKILDE--ENPF 241

Query: 501 RSVV-----ERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            +++      R ++L E       +   +HG ++   +E +M SFKN   + LIAT V  
Sbjct: 242 MAIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAA 301

Query: 553 VGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G+D+   + +    I ENAE +    +H++ GR GR  E     L   P
Sbjct: 302 RGLDITGVTHVFNYDIPENAESY----IHRI-GRTGRAGEKGYTFLFVAP 346


>gi|93587673|ref|NP_001035277.1| probable ATP-dependent RNA helicase DDX17 isoform 4 [Mus musculus]
 gi|76364169|sp|Q501J6|DDX17_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX17; AltName:
           Full=DEAD box protein 17
 gi|63146347|gb|AAH96036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Mus musculus]
          Length = 650

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 138/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 132 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 189

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 245

Query: 401 DEQHRF---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G +             R  L   AT P  +   A    R     ++G++++
Sbjct: 246 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 305

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 306 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 347

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 407

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 408 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 459


>gi|40068493|ref|NP_951062.1| probable ATP-dependent RNA helicase DDX17 isoform 1 [Mus musculus]
 gi|74181626|dbj|BAE30078.1| unnamed protein product [Mus musculus]
 gi|74220643|dbj|BAE31531.1| unnamed protein product [Mus musculus]
 gi|148672698|gb|EDL04645.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_a [Mus
           musculus]
          Length = 652

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 138/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 132 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 189

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 245

Query: 401 DEQHRF---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G +             R  L   AT P  +   A    R     ++G++++
Sbjct: 246 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 305

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 306 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 347

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 407

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 408 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 459


>gi|294505859|ref|YP_003569917.1| Cold-shock DEAD-box protein A [Salinibacter ruber M8]
 gi|294342187|emb|CBH22965.1| Cold-shock DEAD-box protein A [Salinibacter ruber M8]
          Length = 478

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 140/341 (41%), Gaps = 73/341 (21%)

Query: 297 ILQGDVGSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQ-HYEF--IKKYTQNTQI 350
           I+Q   GSGKT   L+ L  +    +   Q +I+ P   LA+Q H EF  +K  T  T  
Sbjct: 82  IVQSQTGSGKTGAFLLPLFDLVNPDKEEQQVLILTPTRELARQIHEEFEQMKIATPRTNR 141

Query: 351 IVEII----TGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVD 401
           +  ++     G  PQ      ++ + +G A ++IGT       + +D+     L ++++D
Sbjct: 142 MEAVLIYGGVGYQPQ------IDGLKNG-AQVVIGTPGRILDHIKKDNFDASTLRMLVLD 194

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E                 A  +L M   P  + +V    GD    +++   +   P K  
Sbjct: 195 E-----------------ADEMLSMGFYPDMKDIVEHVPGD----RVSYMYSATMPPKVR 233

Query: 462 IIPINRIDE----VIERLKVVLSEGKKAYWICPQIE-----------EKKES-----NFR 501
            +    +D+     +   KV + E +  Y++   ++           E+ ES     N +
Sbjct: 234 SVAREFLDDPGFLSLSTDKVSVEENEYRYYLVNPMDKDRVMAQLLELEEPESALIFANTK 293

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             V   N    +    I  + G +S  D+E  +D  + G  +LL+AT V   GIDV D S
Sbjct: 294 REVSYLNKFLSNKGYDIDEMSGDLSQRDREEALDRLREGKLRLLVATDVAARGIDVSDLS 353

Query: 562 IIIIENAEHFGLAQLHQL----RGRVGR-GEEISSCILLYH 597
            + I     + + Q H+      GR  R GEE ++ +L  H
Sbjct: 354 HVFI-----YDVPQDHEYIIHRSGRTARAGEEGTTIVLSTH 389


>gi|157826077|ref|YP_001493797.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford]
 gi|157800035|gb|ABV75289.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford]
          Length = 410

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 138/313 (44%), Gaps = 33/313 (10%)

Query: 302 VGSGKTLVALIAMAAA-VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGKTL  L+ +  + ++    A+I+ P   LA Q +  + K T + ++   ++ G  P
Sbjct: 45  TGSGKTLAYLLPLIDSFIKNKTTALILVPTRELATQIHSTLNKVTTSYKMNSAVLIGGEP 104

Query: 361 QAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRL 412
              +   L++        IIGT       L + S++  ++ + ++DE  R    G++++L
Sbjct: 105 MHKQFMQLKK----NPKAIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQL 160

Query: 413 KLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +   K       VL+ +AT +P+ +++ S   ++            P++  +   N+   
Sbjct: 161 EEINKFLPEKRQVLMFSAT-MPKHIIVVSQKYLN-----------NPVRITVGAANKAAA 208

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRM 525
            I++  + +S+ +K   +  Q+  ++ S       +   ++   + ++       IHG +
Sbjct: 209 EIKQESIHVSDKEKFSELTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDL 268

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S   +E V+ SF+    ++++AT V   G+D+     +I  +        LH++ GR GR
Sbjct: 269 SQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRI-GRTGR 327

Query: 586 GEEISSCILLYHP 598
                  +    P
Sbjct: 328 AGATGHALSFISP 340


>gi|213618724|ref|ZP_03372550.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 180

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 14/175 (8%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEV-LNCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRL 182
            K    M+HP Y      D++ P ++     VY    G+     +K+  +AL  L
Sbjct: 122 GKYGAEMIHPEYRLQG--DLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELL 174


>gi|254169443|ref|ZP_04876268.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
           boonei T469]
 gi|197621613|gb|EDY34203.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
           boonei T469]
          Length = 259

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 18/139 (12%)

Query: 303 GSGKTLVALIAMAAAVEA-GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           G GKT++A++ +   ++  GG+ + +AP   L +QH   IKK T+   +IV  +TG + +
Sbjct: 38  GLGKTIIAILVLVEVLQKKGGKILFLAPTKPLVEQHARTIKKLTKIEDVIV--LTGEVSR 95

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHR----FGVQQRL 412
             R++      +G A +++ T  + Q+ I   +L      LVI DE HR    +      
Sbjct: 96  KKRKE-----LYGSAKVVVATPQIIQNDIIAGELKIGDFSLVIFDEAHRAVGNYAYVYIA 150

Query: 413 KLTQKATAPHVLL-MTATP 430
           K  +K+   H++L +TA+P
Sbjct: 151 KKYRKSREDHLILGITASP 169


>gi|199561314|ref|NP_001013216.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus]
          Length = 734

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 137/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 175 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 234

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     + +I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 235 LNVAC-FYGGTSYQSQ----INQIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 288

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               +     P  LL +AT       + +  + +   
Sbjct: 289 -----VDQMLDLGFAEQVEDIIHESYKSDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 343

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 344 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 397

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 398 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 453

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      C+  Y P
Sbjct: 454 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICVCFYQP 491


>gi|268554558|ref|XP_002635266.1| Hypothetical protein CBG11510 [Caenorhabditis briggsae]
 gi|187030251|emb|CAP30458.1| hypothetical protein CBG_11510 [Caenorhabditis briggsae AF16]
          Length = 1248

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 122/276 (44%), Gaps = 47/276 (17%)

Query: 324  AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            A+++AP+  LAQQ  E  ++Y   T I + +  G   Q  R + L  I  G   +++GT 
Sbjct: 744  ALVIAPVRELAQQIVESFRQYACGTDIKIRLAIG---QQSRARCLADIREG-CDVVVGTS 799

Query: 384  ALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVL-------LMTATPI 431
                D I   ++ L     +++DE  R      L+  ++    H+         M     
Sbjct: 800  GRLMDLIGKGEVCLDHLKFLVLDEADRL-----LQDVKQDPCGHLGAIINDHDFMRNADN 854

Query: 432  PRTLVLTSLGDIDI----SKITEKPAGRKPIKTVIIPINRIDEVIE-------------R 474
             +TL+ ++  D  +    +++ +K  G+  +  +++   R+   ++              
Sbjct: 855  RQTLMTSATFDNAVEEVANRLMKKVDGQNDLVRIVLASGRLSNRVDLHFHEAGGAAKHDT 914

Query: 475  LKVVLSEGKKAYWICPQ----IEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDI 528
            LK +L +  +   I P+    +++K   +F  +  +   + +       +  +HG  S  
Sbjct: 915  LKKILLDTNERGEI-PKTLIFVQKKASCDF--LASKIQMIGQKLEKDFGVQTLHGDRSQD 971

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            ++++ + +FKNG+ K+L+ T V+  GIDVVD   ++
Sbjct: 972  NRDNTISAFKNGSLKILVTTDVLSRGIDVVDLERVV 1007


>gi|218259702|ref|ZP_03475335.1| hypothetical protein PRABACTJOHN_00994 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224948|gb|EEC97598.1| hypothetical protein PRABACTJOHN_00994 [Parabacteroides johnsonii
           DSM 18315]
          Length = 372

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 117/287 (40%), Gaps = 47/287 (16%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN---MPQAHRRKALERIAH------G 374
           A+IMAP   LAQQ  + I+ +T    +    + G    +    +++ +E  A       G
Sbjct: 21  AIIMAPTRELAQQIDQQIEGFTYFVPVSAVAVYGGTDGIAWEQQKRGMEMGADIVIATPG 80

Query: 375 Q--AHIIIGTHALFQDSIQYYKLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLL 425
           +  +HI +GT  L Q S         I+DE  R         + Q  KL  +     +  
Sbjct: 81  RLLSHIKLGTVDLSQVS-------FFILDEADRMLDMGFYDDIMQVYKLLPETCQTIMFS 133

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
            T  P  RTL  T L               K  + V I I+R  E I +   V  + +K 
Sbjct: 134 ATMPPKIRTLAQTIL---------------KNPEEVKIAISRPPETIMQTAYVCYDMQKL 178

Query: 486 YWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +     + +       S+ +  V+   S  +    ++A +H  +    +E VM  FKN
Sbjct: 179 RILEDLFSQSRPQRVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEFKN 238

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           G   +L+AT V+  GID+ D  ++I  +  H     +H++ GR  RG
Sbjct: 239 GRIDILVATDVVSRGIDINDIKLVINFDIPHDPEDYVHRI-GRTARG 284


>gi|254166516|ref|ZP_04873370.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
           boonei T469]
 gi|289596078|ref|YP_003482774.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|197624126|gb|EDY36687.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
           boonei T469]
 gi|289533865|gb|ADD08212.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 694

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 157/369 (42%), Gaps = 77/369 (20%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           QE AIK +    S KN ++ I      SGKTL+  IA+  A + G ++V + P+  LA +
Sbjct: 28  QEEAIKKLF---SGKNLVVAI---PTASGKTLIGYIAILRAFKMGLKSVYIVPLRALAME 81

Query: 337 HYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-YK 394
            YE ++++ +   ++ + +   + P  + +     IA  +        ++ +  ++Y Y 
Sbjct: 82  KYEELRRFEKFGMKVALAMGDYDSPAGYLKYYDVVIATSEK-----MDSILRHDLEYAYN 136

Query: 395 LILVIVDEQHRFGVQQR--------LKLTQKATAPHVLLMTAT----------------- 429
           L +VIVDE H  G   R         K+        ++ ++AT                 
Sbjct: 137 LGVVIVDEVHLLGEASRGPTLEMVISKIRDVNDEAQIIALSATINNSQEIAEWLNGEHVY 196

Query: 430 ----PIP--------RTLVLTSLGDIDI--SKITEKPAGRKPIK---TVIIPINR----- 467
               P+P         TL+      ++I    I      R+ I+    V+I +NR     
Sbjct: 197 SEFRPVPLRLGVYYDDTLLFEDGEKVEIKHDAINIGNLVRRSIELGGQVLIFVNRRKSAE 256

Query: 468 --IDEVIERLKVVLSEGKKA--YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
              +++  R++  L+E  K   Y +   I E++ + +    ER   L  H    +A  H 
Sbjct: 257 SLAEKLRRRVEGYLNEEDKNELYALSDSIMEEEYTIYS---ERIAKLIRH---GVAFHHA 310

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH------ 577
            +S+  +  V  +FKN   K+++AT  +  GI++   ++I+ +   + G + ++      
Sbjct: 311 GLSNRHRSIVERAFKNKWLKVIVATPTLAAGINLPSRTVIVRDVTRYDGFSSVYIPVMEV 370

Query: 578 -QLRGRVGR 585
            Q+ GR GR
Sbjct: 371 KQMLGRAGR 379


>gi|241888805|ref|ZP_04776111.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379]
 gi|241864481|gb|EER68857.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379]
          Length = 486

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 146/352 (41%), Gaps = 42/352 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           L N+ F SPT  Q   I  +L  +        + Q   GSGKT    I +   V    Q 
Sbjct: 17  LTNMNFISPTGIQTETIPYVLSGVDI------LAQAQTGSGKTGAFGIPLVDTVRRNDQL 70

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            ++I+AP   LAQQ  E ++  ++   + V I+ G      + + L++    +  II+GT
Sbjct: 71  QSLILAPTRELAQQVGEQLRLMSRAKGLKVSIVFGGTSIERQIQDLKK----RPQIIVGT 126

Query: 383 HALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLK-LTQKATAPHVLLMTATPIPR 433
                D I            L+L   DE    G  + ++ +  K T+ H  L+ +  +P+
Sbjct: 127 PGRVIDHINRRTIKLETLTHLVLDEADEMLNMGFIEDVRFILSKITSRHQTLLFSATMPK 186

Query: 434 TLVLTS---LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           T++  S   + D  + K T      KP  T    I R +E +E L   L        I  
Sbjct: 187 TIMELSKEFMKDYKLIK-TMSDEDLKPDITEYATIARENEKLETLVGFLDVQNPNLAIVF 245

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
              +++     S +     L E        +HG ++   +  ++  FKN + ++L+AT V
Sbjct: 246 GRTKRRVDELASALIAKGYLAEG-------LHGDITQSKRLEILRKFKNNSLQILVATDV 298

Query: 551 IEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              GID+ D + +    I ++ E +     H++ GR GR  +    I   +P
Sbjct: 299 AARGIDISDVTHVYNFDIPQDVESY----THRI-GRTGRAGKSGVAITFLNP 345


>gi|223042793|ref|ZP_03612841.1| ComF operon protein 1 (ATP-dependent helicase comFA)
           [Staphylococcus capitis SK14]
 gi|222443647|gb|EEE49744.1| ComF operon protein 1 (ATP-dependent helicase comFA)
           [Staphylococcus capitis SK14]
          Length = 430

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 154/349 (44%), Gaps = 52/349 (14%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF+ +K Q+ A   I++ +     +L  L    G+GKT +    ++ A + G    I++
Sbjct: 93  LPFTLSKQQQYASDAIIKAIKNSENLL--LYAVTGAGKTEMMFDGISLARQLGHNVAILS 150

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH------IIIGT 382
           P                    +++EI +  + +A + + ++ +   Q+       +I   
Sbjct: 151 P-----------------RVDVVIEI-SHRIKEAFKNEEIDILHQKQSQKYNGRFVIATV 192

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-----TQKATAPHVLLMTATPIPRTLVL 437
           H L++   Q++  I +  DE   F +     L     T   T    + MTATP  R L+ 
Sbjct: 193 HQLYRFK-QHFDTIFI--DEVDAFPLSMDPNLLLAIDTASKTIHSHIYMTATP-QRQLI- 247

Query: 438 TSLGDIDISKITEKPA--GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
                +  +KI + PA   R+P+     P+ R      +L     + +  + +  QI+++
Sbjct: 248 ---KQMSSNKIIKLPARFHRQPL-----PVPRFKYF--KLNTTRVQTQFIHLLQTQIKQQ 297

Query: 496 KES-NFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           + +  F + +E   + +  + + I  +I     D+ +   +++ + G   ++  TT++E 
Sbjct: 298 RYTLVFFNHIETMKNAYLRYRAHIPNLICVYSEDVYRFEKVEALRRGEHSIVFTTTILER 357

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG-EEISSCILLYHPPLS 601
           G  +    +I+I NAE F  A L Q+ GRVGR  EE +  +L  H  +S
Sbjct: 358 GFTMARLDVIVI-NAETFSKAALIQIAGRVGRKIEEPNGLVLFLHEGVS 405


>gi|254516120|ref|ZP_05128180.1| primosomal protein N' [gamma proteobacterium NOR5-3]
 gi|219675842|gb|EED32208.1| primosomal protein N' [gamma proteobacterium NOR5-3]
          Length = 715

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 21/147 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +AA +E G QA+++ P IG+  Q     ++++    +  + ++
Sbjct: 205 LLQGVTGSGKTEVYLRLIAACLERGDQALVLIPEIGLTPQT----VERFEARFKTPIAVL 260

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
              M    R  A +    G A I++GT  A+F       +  L++VDE+H    +Q+   
Sbjct: 261 HSGMADGQRFAAWQAAQSGSAGIVMGTRSAIF---TPLARPGLIVVDEEHDGSYKQQDGF 317

Query: 412 --------LKLTQKATAPHVLLMTATP 430
                   +K  Q    P V+L +ATP
Sbjct: 318 RYSARDVAVKRAQLEACP-VILGSATP 343


>gi|150395295|ref|YP_001325762.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150026810|gb|ABR58927.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae
           WSM419]
          Length = 626

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 129/314 (41%), Gaps = 40/314 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  +    +         A+++AP   LA Q    ++   + 
Sbjct: 41  LVSAQTGSGKTVAFGLALAPTLIGSARQFAQPGAPLALVIAPTRELALQVKRELEWLYEI 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399
               +    G M     R+ L+R     AHI++GT     D I+   L        +L  
Sbjct: 101 AGATIASCVGGMDMRSERRMLDR----GAHIVVGTPGRLCDHIRRGSLDISELKAVVLDE 156

Query: 400 VDEQHRFGVQQRLK-LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKI----TEKPA 453
            DE    G ++ L+ + + A A    LM +  +PR++  L      D  +I     +K  
Sbjct: 157 ADEMLDLGFREDLEFILEAAPADRRTLMFSATVPRSIATLAKNYQRDAVRIGVTSEQKQH 216

Query: 454 GRKPIKTVII-PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           G    + +++ P +R + +I  L+    E + A   C         + R+ V    +   
Sbjct: 217 GDIEYRALLVAPSDRENAIINVLR--FYEARNAIVFC---------STRAAVNHLTARFN 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   S+  + G +S  ++   + + ++G  ++ IAT V   GID+    ++I  +     
Sbjct: 266 NRGFSVVALSGELSQNERTHALQAMRDGRARVCIATDVAARGIDLPGLELVIHADLPTNS 325

Query: 573 LAQLHQLRGRVGRG 586
              LH+  GR GR 
Sbjct: 326 DTLLHR-SGRTGRA 338


>gi|67539522|ref|XP_663535.1| hypothetical protein AN5931.2 [Aspergillus nidulans FGSC A4]
 gi|74657087|sp|Q5B0J9|DBP2_EMENI RecName: Full=ATP-dependent RNA helicase dbp2
 gi|40738604|gb|EAA57794.1| hypothetical protein AN5931.2 [Aspergillus nidulans FGSC A4]
 gi|259479898|tpe|CBF70542.1| TPA: ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B0J9] [Aspergillus
           nidulans FGSC A4]
          Length = 563

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 145/343 (42%), Gaps = 53/343 (15%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +I+AP   LA Q    I K+ ++++I  
Sbjct: 185 ETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRN 244

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR-- 405
             + G +P+  + + L R       + I T     D ++       ++  +++DE  R  
Sbjct: 245 TCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRML 300

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
              F  Q R  ++Q           AT P  +   A+      +  ++G +D+S   +IT
Sbjct: 301 DMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNNYIQVNIGSMDLSANHRIT 360

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           +       I  VI    + D +I+ L K++ + G K    C      K       + RF 
Sbjct: 361 Q-------IVEVISEFEKRDRMIKHLEKIMENRGNK----CLVFTGTKR--IADEITRF- 406

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D + +I  + 
Sbjct: 407 -LRQDGWPALSI-HGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDY 464

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            +     +H++ GR GR     + I  +    +K +   +++L
Sbjct: 465 PNNSEDYVHRI-GRTGRAGAKGTAITFFTTDNAKQARDLVTIL 506


>gi|325108922|ref|YP_004269990.1| primosomal protein N' [Planctomyces brasiliensis DSM 5305]
 gi|324969190|gb|ADY59968.1| primosomal protein N' [Planctomyces brasiliensis DSM 5305]
          Length = 787

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 11/140 (7%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P +  E+A       M +  R L +L G  GSGKT + + A+  AVE G QA+++ P I 
Sbjct: 252 PPRRDEAASVLPADPMPEPLRTL-LLHGVTGSGKTEIYIRAIRHAVEFGRQAIVLVPEIS 310

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSI 390
           +  Q    F +++       V ++  ++  A R    +RIA G+  +I+G   A+F    
Sbjct: 311 LTPQTIRRFRRRFD-----TVAVLHSHLTDAERHFHWQRIAAGEVQVIVGARSAVFAPCP 365

Query: 391 QYYKLILVIVDEQHRFGVQQ 410
              +L L+++DE+H    +Q
Sbjct: 366 ---RLGLIVIDEEHENTFKQ 382


>gi|168179718|ref|ZP_02614382.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|182669435|gb|EDT81411.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
          Length = 376

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 151/350 (43%), Gaps = 52/350 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           PT  QE +I      M  KN    I +   G+GKTL  L+ M   +       Q +I+ P
Sbjct: 25  PTPIQEESI------MLIKNGNDVIAEAQTGTGKTLAFLLPMFENISPDINAIQGLIITP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA----- 384
              LA Q  E   K  +   + +    G      + K L+       H++I T       
Sbjct: 79  TRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLK----NNIHLVIATPGRLLDH 134

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDI 443
           L ++++ +  L  +++DE       + L +  K     ++    TP  R TL  ++  + 
Sbjct: 135 LNRNTLNFKDLKTLVLDE-----ADEMLLMGFKNDVRSII--ENTPRKRQTLCFSATMNS 187

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL---SEGKKAYWICPQIEEKKESNF 500
           ++ K+  K   R P K +II    +   ++ +K VL   ++ +K   +C  ++E  E+ F
Sbjct: 188 EVKKLAYKNM-RDP-KLIIIEKEEV--TLKNIKQVLIETTDRRKQEDLCKILDE--ENPF 241

Query: 501 RSVV-----ERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            +++      R ++L E       +   +HG ++   +E +M SFKN   + LIAT V  
Sbjct: 242 MAIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAA 301

Query: 553 VGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G+D+   + +    I ENAE +    +H++ GR GR  E     L   P
Sbjct: 302 RGLDITGVTHVFNYDIPENAESY----IHRI-GRTGRAGEKGYTFLFVAP 346


>gi|163750995|ref|ZP_02158227.1| primosomal protein N' [Shewanella benthica KT99]
 gi|161329285|gb|EDQ00283.1| primosomal protein N' [Shewanella benthica KT99]
          Length = 731

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 30/213 (14%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P +    Q  A+  + Q   Q      +L+G  GSGKT V L  + + ++ G QA+I+ P
Sbjct: 199 PLTLNPEQAVAVATLNQ---QSGYHCTLLEGVTGSGKTEVYLALLESVLKQGKQALILVP 255

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            IG+  Q     I ++    ++ V +I   +    R  A  +   G+A IIIGT +    
Sbjct: 256 EIGLTPQT----ISRFKSRFKVKVAVIHSGLTDNQRLAAWRQAKTGEAAIIIGTRSALFT 311

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH---------------VLLMTATPIPR 433
            + Y   I  I+DE+H    +Q     Q+    H               VLL TATP   
Sbjct: 312 PMAYPGTI--ILDEEHDASFKQ-----QEGVGYHARDLAVMRGHLEKIPVLLGTATPSLE 364

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           +L     G     +++++    K ++  II I+
Sbjct: 365 SLQNALSGRYKHLQLSQRAGNAKKVRQGIIDIS 397


>gi|238502010|ref|XP_002382239.1| ATP-dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
 gi|220692476|gb|EED48823.1| ATP-dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
          Length = 498

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 138/345 (40%), Gaps = 47/345 (13%)

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQI 350
            + GSGKTL   +     ++             AVI++P   LA Q Y+ + K++ +  +
Sbjct: 124 AETGSGKTLAFGLPCLKKIQDSAMTKQKPYRPLAVIISPTRELAMQIYDQLLKFSGSVGV 183

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR 405
            +  + G + +  +R+AL+      A +++ T    +D     S+   K+  +++DE  R
Sbjct: 184 RMACVFGGVRKEEQREALK-----TAGVVVATPGRLKDLQNDGSVDLGKVKYLVLDEADR 238

Query: 406 F---GVQQRLK---LTQKATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKP 457
               G +Q +K        +    ++ TAT  P  R L  T +       I   P+    
Sbjct: 239 MLDKGFEQDIKDIIRPMPVSKRQTIMFTATWPPSVRDLASTFMSSPVTVTIGGDPSADPR 298

Query: 458 IKTVIIPI----------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             T I  +          +R+ +++ R +  + E +K    C          ++    R 
Sbjct: 299 ANTRIKQVVEVVKPHEKESRLVQLLNRSQRGVPEPEKVLAFC---------LYKKEAMRI 349

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L       +A IHG +S  ++   +D+FK G   +L+AT V   G+D+     +I   
Sbjct: 350 ERLLRTKGFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPSVKQVINVT 409

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
                   +H++ GR GR       + L+       S   ++VL+
Sbjct: 410 FPLTVEDYVHRI-GRTGRAGAEGHAVTLFTETDKAQSGALINVLR 453


>gi|149191663|ref|ZP_01869906.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1]
 gi|148834504|gb|EDL51498.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1]
          Length = 460

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 132/308 (42%), Gaps = 35/308 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I QG  GSGKT    + + + +       Q++++ P   LA Q  + I+   +    I V
Sbjct: 45  IGQGKTGSGKTAAFSLGVLSNLRVKRFRVQSLVLCPTRELADQVAKEIRTLARGIHNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G MP   +  +LE   HG AHI++GT     D ++  ++ L     +++DE  R  
Sbjct: 105 LTLCGGMPMGPQIGSLE---HG-AHILVGTPGRILDHLEKGRINLSELNTLVLDEADRML 160

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIK 459
             G +  L   + Q       LL +AT  P   +T+    +   ++ K+ E       IK
Sbjct: 161 DMGFKDALDAIIDQAPKERQTLLFSAT-FPEQIQTIAARVMKQPEVVKV-ESKHDHSSIK 218

Query: 460 TVIIPINRIDEVIERLKVVL--SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
                 N ++E    L+ +L   + + A   C     KKE     V    + LH H   S
Sbjct: 219 QFFYQTNTLEERDNALENLLLTHQPESAVVFC---NTKKE-----VQNVADELH-HRGFS 269

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +  IHG +   D++  +  F N +  +L+AT V   G+DV +   +   +        +H
Sbjct: 270 VIDIHGDLEQRDRDQALVQFANKSVSILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVH 329

Query: 578 QLRGRVGR 585
           ++ GR GR
Sbjct: 330 RI-GRTGR 336


>gi|126339554|ref|XP_001367967.1| PREDICTED: similar to DEAD-box protein p72 [Monodelphis domestica]
          Length = 772

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 140/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 254 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 311

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 312 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 367

Query: 401 DEQHRF---GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G + +++            L   AT P  +   A    R     ++G++++
Sbjct: 368 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 427

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 428 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 469

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 470 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 529

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 530 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 581


>gi|157121045|ref|XP_001653747.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882993|gb|EAT47218.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 814

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 150/366 (40%), Gaps = 58/366 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------------ 320
           PT  Q  AI   LQ     NR + I   + GSGKTL  LI +   +++            
Sbjct: 409 PTPIQRQAIPIGLQ-----NRDI-IGIAETGSGKTLAFLIPLLTWIQSLPKIDRLETADQ 462

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+I+AP   LAQQ  E  +K+ Q   I   ++ G +    R +   R+  G   I+I
Sbjct: 463 GPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGL---SREEQGFRLRLG-CEIVI 518

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKL---------TQKAT 419
            T     D ++   L+L     +++DE  R         VQ+ L+          T++A 
Sbjct: 519 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAE 578

Query: 420 APHVLL---MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               L+    T     +T++ T+     + ++  +   R+P    I  + +  E  E++ 
Sbjct: 579 DASKLMENFNTKKKYRQTVMFTATMPPAVERLA-RTYLRRPATVYIGSVGKPTERTEQIV 637

Query: 477 VVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            +++E +K   +   +    E       N +   +      E    +   +HG      +
Sbjct: 638 HIMTENEKRKKLMEILSRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 697

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----G 586
           E  + S KNG+  +L+AT V   GID+ D S++I  +         H++ GR GR    G
Sbjct: 698 EYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRI-GRTGRAGKTG 756

Query: 587 EEISSC 592
             IS C
Sbjct: 757 CAISFC 762


>gi|83816639|ref|YP_444201.1| ATP-dependent RNA helicase [Salinibacter ruber DSM 13855]
 gi|83758033|gb|ABC46146.1| ATP-dependent RNA helicase [Salinibacter ruber DSM 13855]
          Length = 478

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 140/341 (41%), Gaps = 73/341 (21%)

Query: 297 ILQGDVGSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQ-HYEF--IKKYTQNTQI 350
           I+Q   GSGKT   L+ L  +    +   Q +I+ P   LA+Q H EF  +K  T  T  
Sbjct: 82  IVQSQTGSGKTGAFLLPLFDLVNPDKEEQQVLILTPTRELARQIHEEFEQMKIATPRTNR 141

Query: 351 IVEII----TGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVD 401
           +  ++     G  PQ      ++ + +G A ++IGT       + +D+     L ++++D
Sbjct: 142 MEAVLIYGGVGYQPQ------IDGLKNG-AQVVIGTPGRILDHIKKDNFDASTLRMLVLD 194

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E                 A  +L M   P  + +V    GD    +++   +   P K  
Sbjct: 195 E-----------------ADEMLSMGFYPDMKDIVEHVPGD----RVSYMYSATMPPKVR 233

Query: 462 IIPINRIDE----VIERLKVVLSEGKKAYWICPQIE-----------EKKES-----NFR 501
            +    +D+     +   KV + E +  Y++   ++           E+ ES     N +
Sbjct: 234 SVAREFLDDPGFLSLSTDKVSVEENEYRYYLVNPMDKDRVMAQLLELEEPESALIFANTK 293

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             V   N    +    I  + G +S  D+E  +D  + G  +LL+AT V   GIDV D S
Sbjct: 294 REVSYLNKFLSNKGYDIDEMSGDLSQRDREEALDRLREGKLRLLVATDVAARGIDVSDLS 353

Query: 562 IIIIENAEHFGLAQLHQL----RGRVGR-GEEISSCILLYH 597
            + I     + + Q H+      GR  R GEE ++ +L  H
Sbjct: 354 HVFI-----YDVPQDHEYIIHRSGRTARAGEEGTTIVLSTH 389


>gi|83592722|ref|YP_426474.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83575636|gb|ABC22187.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 677

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 153/355 (43%), Gaps = 63/355 (17%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-------AAVEAGGQ--AVI 326
           ++ +A++  + +   + R L ++    GSGKT+   +A+A       A +E   +  A+I
Sbjct: 20  TEPTAVQTAVLEPGAQGRDL-LVSAQTGSGKTVAYGLAIASTLLGDEAVLEPATEPLALI 78

Query: 327 MAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +AP   LA Q H E    Y      +V  + G  P+A  R    R+  G  HI++GT   
Sbjct: 79  VAPTRELALQVHRELAWLYGHAGAKVVSCVGGMDPRAETR----RLGEG-CHIVVGTPGR 133

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTL 435
            +D ++   L        +L   DE    G ++ L+   +AT      LL +AT +P+ +
Sbjct: 134 LRDHLERGNLAVGRLKAVVLDEADEMLDLGFREDLEFLLEATPQERRTLLFSAT-LPKAI 192

Query: 436 VLTSLGDIDISKITEKPAGRKPI------------KTVIIPINRIDE-VIERLKVVLSEG 482
           V        ++K  ++ A R  +            + + +  N ++  V+  L+ V S  
Sbjct: 193 VT-------LAKRYQREAWRIAVAAGKQGHADIEYRAISVAPNEVEHAVVNLLRYVESPA 245

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
              +  C         N R  V    + L E   +++A+  G +   ++   + + ++G 
Sbjct: 246 TLVF--C---------NTRESVRHLQAILLERGFAAVAL-SGELGQGERNQALQALRDGR 293

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILL 595
            ++ +AT V   GID+ +  ++I  +AE    AQ  Q R GR GR       +LL
Sbjct: 294 ARVCVATDVAARGIDLPNIGLVI--HAELPQNAQTLQHRSGRTGRAGRKGISVLL 346


>gi|260223703|emb|CAX28486.1| ATP-dependent DNA helicase [Candidatus Phlomobacter fragariae]
          Length = 160

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 12/151 (7%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFI-DLLFYHPSSFIDRHYRP 59
           MR   L+ +  PL++  GVG   +  L+KI         R I DLLF+ P  + D+    
Sbjct: 1   MRGKLLDAI--PLTSLNGVGTSQAEKLNKI-------GLRTIQDLLFHLPLRYEDQTQLY 51

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
            IS++     VT++G I Q +   L +RR     ++DG+G +TL FF   T  +KN    
Sbjct: 52  TISDVQPGCSVTVSGEILQ-TKIVLGRRRMMTSQISDGSGTLTLRFFNFSTA-IKNSLAV 109

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150
           G+ +   G+I++      ++HP Y    + D
Sbjct: 110 GKYVIAYGEIRRGNLGPEIIHPEYKIKPNAD 140


>gi|302667761|ref|XP_003025461.1| hypothetical protein TRV_00401 [Trichophyton verrucosum HKI 0517]
 gi|291189571|gb|EFE44850.1| hypothetical protein TRV_00401 [Trichophyton verrucosum HKI 0517]
          Length = 455

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 122/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    V+      QA+I+AP   LAQQ  + +        +   
Sbjct: 64  IAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMNVDCH 123

Query: 354 IITGNMPQAHRRKALERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
              G        KAL+          G+ H +I    L  D I+ +  +L   DE    G
Sbjct: 124 ACIGGTNVREDMKALQDGPQVVVGTPGRVHDMIQRRVLKTDHIKMF--VLDEADEMLSRG 181

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             +++    +   ++T   V+L++AT  P           D+ ++T K   R P++   I
Sbjct: 182 FTEQIYDIFQFLPQST--QVVLLSATMPP-----------DVLEVTTKFM-RDPVR---I 224

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      +K  W    + +  E+          N R  V+      + 
Sbjct: 225 LVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLQA 284

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 285 RDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335


>gi|302873473|ref|YP_003842106.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307688348|ref|ZP_07630794.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302576330|gb|ADL50342.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 380

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 150/339 (44%), Gaps = 37/339 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT+ Q+  IK  L++         I +   GSGKTL  L+ +   ++      QA+I+AP
Sbjct: 26  PTEIQQLVIKSALENKDI------IGESYTGSGKTLSYLLPIFHKIDTAKREMQAIILAP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q  E +    +N++I V  +T  + +A   K ++++   + HII+GT     D 
Sbjct: 80  THELVMQIEEQVSLLAKNSEIPVTSLTI-IGEASMEKQIKKLKDNKPHIIVGTIGRVLDL 138

Query: 390 IQYYKLI-----LVIVDEQHRFGVQQRLKLTQ---KATAPHVLLM--TATPIPRTLVLTS 439
           IQ  K+       +++DE      +  L       K T     LM  +AT  P+TL    
Sbjct: 139 IQKKKIKAHTVKTIVIDEADNLLSESSLGTVNNIIKTTMRDRQLMAFSATINPKTLDTAK 198

Query: 440 --LGDIDISKITEKPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEK 495
             + + ++ K   K A    I    I  +  D  E++ +L +  ++ ++A     + EE 
Sbjct: 199 ALMKEPEVFKTDGKVAMNPRISHEYIVCSHRDKFEILRKL-IAATKTERAIVFLNKNEE- 256

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                + + ++ N    + + +   I+G  S  ++++ ++SFK+G   LL+++ +   G+
Sbjct: 257 ----IQLITDKLN----YHSKNAGGIYGAASKEERKNTINSFKSGKINLLVSSDLSARGL 308

Query: 556 DVVDASIIIIENAEH-FGLAQLHQLRGRVGRGEEISSCI 593
           DV + + I   N +            GR  RG    +CI
Sbjct: 309 DVPEVTHIF--NLDFPVNTNDYSHRAGRTARGNLSGTCI 345


>gi|115375095|ref|ZP_01462364.1| superfamily II DNA and RNA helicase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310825404|ref|YP_003957762.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|115367933|gb|EAU66899.1| superfamily II DNA and RNA helicase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398476|gb|ADO75935.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 421

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/347 (20%), Positives = 146/347 (42%), Gaps = 48/347 (13%)

Query: 302 VGSGKTLVALIAMAAAVEA--GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            G+GKT   ++ +        G   +++AP   L QQ  E ++ + +   +   ++ G  
Sbjct: 49  TGTGKTAAYVLPLVERFSGRKGLLGLVLAPTRELVQQISEPVRLFAEPHGLTHTVVVGGE 108

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQR 411
             A + +AL+     +   ++ T     D     ++ + +L  +++DE  R    G Q +
Sbjct: 109 DMAAQVEALKE----RPTFLLATPGRLVDLMASQAVTFPQLEALVLDEADRMLDMGFQFQ 164

Query: 412 LKLTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVII----P 464
           ++   KA            +PR   TL+ ++    D+++   +    +P++  +     P
Sbjct: 165 IETILKA------------LPRRRQTLLFSATLGPDVTRFA-RDRLYQPVRVEVTRSGTP 211

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---I 518
             R ++   RL  V +E K A  +   +  K E     F    ER + +H+    +    
Sbjct: 212 AERAEQ---RLYSVKAEEKSALLLT--LMRKNEGTALIFTRTKERADKVHKALQRAGYPC 266

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++H   +   ++  +D+F+ GTC+ L+AT +   G+DV D   +I  +  H     +H+
Sbjct: 267 DVLHADRTQSQRKQALDAFRQGTCRCLVATDIAARGLDVEDVGHVINYDLPHAPEDYVHR 326

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRL-SVLKNTEDGFLIAEED 624
           + GR  R  + S     +  P    +  R+ S+++       +  ED
Sbjct: 327 I-GRTARA-QASGVATTFATPKDAPTLARIESIMRTKVPRLPVPRED 371


>gi|256847869|ref|ZP_05553314.1| ATP-dependent RNA helicase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715558|gb|EEU30534.1| ATP-dependent RNA helicase [Lactobacillus coleohominis 101-4-CHN]
          Length = 437

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 120/281 (42%), Gaps = 47/281 (16%)

Query: 302 VGSGKTLVALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GSGKTL     +   V+AG   Q V++ P   LA Q    ++++     I V+ +TG  
Sbjct: 40  TGSGKTLAFTWPLLTRVQAGTGIQIVVLEPSQELALQTARVMREWAGLMGIKVQSLTGG- 98

Query: 360 PQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQR 411
             A+ R+ +E +  G   I++GT     H L    ++   L  +++DE     R   Q  
Sbjct: 99  --ANLRRQVEHLKKGHPDIVVGTPGRILHLLDSRHLKLKHLKTLVIDEADDLLRDDTQAV 156

Query: 412 LKLTQKAT--APHVLLMTATPIPRTLVLTSLGDIDISK--ITEKPAGRKPIKTVII---P 464
           ++  ++ T  +  +   +AT   +      +   D+ K  + ++   R P+K  ++    
Sbjct: 157 VEDIERRTPLSTQLAFFSATSSKQLSQADVIFGRDVVKYDVRKQDDSRGPVKHGLLYART 216

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV--ERFNSLH------EHFTS 516
           + +  +++ERL                    K  NFR++V      +LH      +H   
Sbjct: 217 MAQKAQMLERLS-------------------KTKNFRALVFFSSIKTLHYTASRLKHAGV 257

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S A + GR    ++E VM  F+    KLL+ T V   GID+
Sbjct: 258 SSATLGGRQRQTEREKVMRQFRKHQIKLLLTTDVAARGIDI 298


>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040278|gb|ACT57074.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 573

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 130/318 (40%), Gaps = 50/318 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A+ + A            A+ +AP   LA Q    ++     
Sbjct: 41  LVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399
           T ++V +  G +     R+ L+      AHI++GT     D I+   L        +L  
Sbjct: 101 TGVVVAVCIGGVSVHRERRDLQ----NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK- 456
            DE    G +  ++  L        +L+ +AT  P    L      D  ++      R+ 
Sbjct: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216

Query: 457 ---PIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKKESNFRSVVERFNS-LH 511
                + V++ ++  D  I  + ++   G K A   C         + R+ V RF   L 
Sbjct: 217 SDIDYRAVLVALSDRDNAI--VNILRYHGAKNAIVFC---------STRASVSRFTKVLA 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IEN 567
           EH    +A+  G +S  ++ + +   ++G  ++ IAT V   GID+ D  ++I      N
Sbjct: 266 EHLFQVVAL-SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324

Query: 568 AEHFGLAQLHQLRGRVGR 585
            E+     LH+  GR GR
Sbjct: 325 PENL----LHR-SGRTGR 337


>gi|15605441|ref|NP_220227.1| SWF/SNF family helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|255311538|ref|ZP_05354108.1| SWF/SNF family helicase [Chlamydia trachomatis 6276]
 gi|255317839|ref|ZP_05359085.1| SWF/SNF family helicase [Chlamydia trachomatis 6276s]
 gi|255349101|ref|ZP_05381108.1| SWF/SNF family helicase [Chlamydia trachomatis 70]
 gi|255503638|ref|ZP_05382028.1| SWF/SNF family helicase [Chlamydia trachomatis 70s]
 gi|255507317|ref|ZP_05382956.1| SWF/SNF family helicase [Chlamydia trachomatis D(s)2923]
 gi|3329163|gb|AAC68303.1| SWF/SNF family helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|289525752|emb|CBJ15233.1| putative helicase [Chlamydia trachomatis Sweden2]
 gi|296435325|gb|ADH17503.1| SWF/SNF family helicase [Chlamydia trachomatis E/150]
 gi|296436253|gb|ADH18427.1| SWF/SNF family helicase [Chlamydia trachomatis G/9768]
 gi|296437182|gb|ADH19352.1| SWF/SNF family helicase [Chlamydia trachomatis G/11222]
 gi|296438113|gb|ADH20274.1| SWF/SNF family helicase [Chlamydia trachomatis G/11074]
 gi|296439042|gb|ADH21195.1| SWF/SNF family helicase [Chlamydia trachomatis E/11023]
 gi|297140614|gb|ADH97372.1| SWF/SNF family helicase [Chlamydia trachomatis G/9301]
 gi|297748839|gb|ADI51385.1| SWF/SNF family helicase [Chlamydia trachomatis D-EC]
 gi|297749719|gb|ADI52397.1| SWF/SNF family helicase [Chlamydia trachomatis D-LC]
          Length = 1163

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAA--VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL  +IA+  +   + GG ++I+ P  ++     EF K   +   ++V+ 
Sbjct: 721 ILADDMGLGKTLQTIIAVTQSRLEKGGGCSLIICPTSLVYNWKEEFRKFNPEFKTLVVDG 780

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL---VIVDEQHRFGVQQR 411
           I      + RRK L  +   +  + I ++ L Q  I  YK  L   V++DE H   ++ R
Sbjct: 781 IP-----SQRRKQLASLE--EYDVAITSYNLLQKDIDIYKDFLFDYVVLDEAHH--IKNR 831

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL-VLTSLGDI 443
                K+     A H L++T TPI  +L  L SL D 
Sbjct: 832 TTRNAKSVKMIRACHRLILTGTPIENSLEELWSLFDF 868


>gi|255548421|ref|XP_002515267.1| hypothetical protein RCOM_1346600 [Ricinus communis]
 gi|223545747|gb|EEF47251.1| hypothetical protein RCOM_1346600 [Ricinus communis]
          Length = 791

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 131/314 (41%), Gaps = 51/314 (16%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   ++ M   +        E G   VI AP   LA Q Y   KK++++  I V 
Sbjct: 270 TGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFSKSHGIRVS 329

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G M +  + K L+        I++ T     D     ++   K   +++DE  R   
Sbjct: 330 AVYGGMSKLEQFKELK----AGCDIVVATPGRLIDLLKMKALNMSKATYLVLDEADRMFD 385

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIKT 460
             F  Q R  + Q       LL +AT +PR    L    L D              PI+ 
Sbjct: 386 LGFEPQIRSIVGQIRPDRQTLLFSAT-MPRKVEKLAREILSD--------------PIRV 430

Query: 461 VIIPINRIDEVIERL-KVVLSEGKKAYWI---CPQIEEKKE----SNFRSVVERFNSLHE 512
            +  +   +E I ++ +V+ S+ +K  W+    P + +  +    ++ ++ V+   S   
Sbjct: 431 TVGEVGMANEDITQVVQVIPSDAEKLPWLFEKLPGMIDDGDVLVFASKKATVDEIESQLA 490

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD-ASIIIIENAEHF 571
                +A +HG      +  ++  FK+G   +LIAT V   G+D+    S++  + A   
Sbjct: 491 QKGFKVAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSLKSVVNFDIARDM 550

Query: 572 GLAQLHQLRGRVGR 585
            +  +H++ GR GR
Sbjct: 551 DM-HVHRI-GRTGR 562


>gi|146421825|ref|XP_001486856.1| hypothetical protein PGUG_00233 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 534

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 123/291 (42%), Gaps = 46/291 (15%)

Query: 300 GDVGSGKTLV----ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            + GSGKT      A+  +    + G + + ++P   LA Q Y+ +   T+N  +    I
Sbjct: 173 AETGSGKTFAFGVPAINNIITDNKKGLRVLCISPTRELALQIYDNLTMLTKNCGLTCVAI 232

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---- 406
            G +P+  + KA++      A +++ T     D     ++    +  +++DE  R     
Sbjct: 233 YGGVPKDQQIKAVK-----TASVVVATPGRLVDLLNDGAVDLSTIDYLVLDEADRMLEKG 287

Query: 407 ---------GV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
                    G   +QR  L   AT P  +   A       V  S+G+ D     E  A +
Sbjct: 288 FEEDIKNIIGCTNKQRQTLMFTATWPKEVRELAATFMNKAVKVSIGNRD-----ELAANK 342

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER--FNSLHEH 513
           +  +TV +   R D+    L+++   G     +   + +K+ +   +++ R  FN     
Sbjct: 343 RITQTVEVMDPR-DKERRLLQLLRQYGSDQKILVFALYKKEATRVEAMLRRSGFN----- 396

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               +A IHG +    + S +DSFK G   LL+AT V   G+D+ +  ++I
Sbjct: 397 ----VAAIHGDLLQQQRTSALDSFKRGDSNLLLATDVAARGLDIPNVKVVI 443


>gi|326923424|ref|XP_003207936.1| PREDICTED: hypothetical protein LOC100542017, partial [Meleagris
            gallopavo]
          Length = 1461

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 136/338 (40%), Gaps = 59/338 (17%)

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
            I Q   G+GKT    I +   ++A  Q          +++AP   LA Q  +  K  T+ 
Sbjct: 911  IAQAQTGTGKTFSFAIPLIEKLQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITR- 969

Query: 348  TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             ++ V    G  P   +   ++ I  G   I++GT    +D +Q  KL L     V++DE
Sbjct: 970  -KLTVACFYGGTPYNGQ---IDLIRSG-IDILVGTPGRIKDHLQNGKLDLTKVKHVVLDE 1024

Query: 403  QHRF-------GVQQRLKLTQKATA---PHVLLMTAT------PIPRTLVLTSLGDIDIS 446
              +         V+  L++  K  +   P  LL +AT       + +  + +    +D+ 
Sbjct: 1025 VDQMLDMGFAEQVEDILRVAYKKDSEDNPQTLLFSATCPNWVYDVAKKYMKSKYEQVDL- 1083

Query: 447  KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-- 504
                   GR+  K            +E L +     ++A  I   I+    S+ R++V  
Sbjct: 1084 ------IGRRTQKAAT--------TVEHLAIECHWSQRAAVIGDVIQVYSGSHGRTIVFC 1129

Query: 505  ---ERFN--SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
               +  N  +L+         +HG +    +E  +  F+NG  K+L+AT V   G+D+ +
Sbjct: 1130 ETKKDANELALNASIKQDCQSLHGDIPQKQREITLKGFRNGAFKVLVATNVAARGLDIPE 1189

Query: 560  ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
              +++  +      + +H+  GR GR      CI  Y 
Sbjct: 1190 VDLVVQSSPPKDVESYIHR-SGRTGRAGRTGICICFYQ 1226


>gi|313221076|emb|CBY31906.1| unnamed protein product [Oikopleura dioica]
          Length = 604

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 140/363 (38%), Gaps = 56/363 (15%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           +R + F  PT  Q +AI  IL        ++ I Q   GSGKT   +  +   V      
Sbjct: 244 IRKVGFLDPTPIQSTAIPQILAGRD----VIGIAQ--TGSGKTAGFVWPIIYHVTKQRPL 297

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQ 375
               G  A+IMAP   L QQ Y  ++K+ +N   I V I  G +    + K L+      
Sbjct: 298 KYGDGPMALIMAPTRELCQQLYAEVRKFAKNYDSIRVGICFGGVNMYEQGKELKM----G 353

Query: 376 AHIIIGTHALFQDSI-----QYYKLILVIVDEQHR---FGVQQRLKLTQKATAP--HVLL 425
             I++ T     D +     +  K  ++ +DE  R    G + +++       P    L 
Sbjct: 354 VEILVATPGRLIDHVKKGNTELSKCTIICLDEADRMLELGFEPQVRSICNHVRPDKQCLF 413

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAG---RKPIKTVIIPINRIDEVIERLKVVLSEG 482
            +AT                 K+ E+ A      P+K     I +++E + +   +L + 
Sbjct: 414 FSAT---------------FKKVIERLATEVLNDPVKLTQGQIGQVNENVTQNFKILGQD 458

Query: 483 KKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +K  W+   I +         F +      ++HE    S     +IHG M   ++  V+ 
Sbjct: 459 QKLQWLLGNIVQLNSVGSLLVFVTRKADCVTVHEELKKSGFKTGVIHGDMHQAERNDVIK 518

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK      LIAT V   G+D+     +I  +        +H++ GR  R     + I L
Sbjct: 519 AFKRQQLATLIATDVAARGLDISHIKTVINYDPARNYDTHVHRV-GRTARAGNTGTAISL 577

Query: 596 YHP 598
             P
Sbjct: 578 LTP 580


>gi|83814418|ref|YP_445792.1| ATP-dependent DNA helicase RecQ [Salinibacter ruber DSM 13855]
 gi|83755812|gb|ABC43925.1| ATP-dependent DNA helicase, RecQ family [Salinibacter ruber DSM
           13855]
          Length = 649

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 122/318 (38%), Gaps = 46/318 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G GK+L   +    AV   G  ++++P+  L Q   E +    Q   I    I   +P 
Sbjct: 48  TGGGKSLCYQLP---AVLGDGFVLVVSPLIALMQDQVEAL----QAQGIAATFINSTLPG 100

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQRLK 413
               +      HGQ  ++          +FQ   +   + L+ VDE H    +G   R  
Sbjct: 101 YEVEQRWTNAEHGQYDLVYMAPERFATEVFQARAERLDVSLMAVDEAHCASEWGHHFRPD 160

Query: 414 L-------TQKATAPHVLLM-TATPIPRT--LVLTSLGD-IDISKITEKPAGRKPIKTVI 462
                    Q  T P V L  TATP  R   L L  L D +++ +  ++P        + 
Sbjct: 161 YLQIPDARAQLGTPPTVALTATATPAVREDILELLELPDAVEVVRGFDRP-------NIT 213

Query: 463 IPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             + R D+  ERL+ V+    G    ++            R    R+    +    S+A 
Sbjct: 214 WSVFRTDKKWERLRAVVDAVPGTGIVYV----------PTRRDAARWRKRLDAHGVSVAA 263

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +    +E    ++ +   ++++AT    +GID  D    ++  A    L   +Q  
Sbjct: 264 YHGGLDSEAREHRQQAWVDDDVRVMVATNAFGMGIDKPDVR-FVVHMAPPSSLESYYQEA 322

Query: 581 GRVGRGEEISSCILLYHP 598
           GR GR  + +  +LLY P
Sbjct: 323 GRAGRDGKQAHAVLLYQP 340


>gi|62185488|ref|YP_220273.1| putative helicase [Chlamydophila abortus S26/3]
 gi|62148555|emb|CAH64326.1| putative helicase [Chlamydophila abortus S26/3]
          Length = 1165

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 19/157 (12%)

Query: 297 ILQGDVGSGKTLVALIAMA-AAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL A+IA+  + +E G G ++I+ P  ++     EF +K+  N +    I
Sbjct: 723 ILADDMGLGKTLQAIIAITQSKLEKGKGCSLIVCPTSLVYNWKEEF-RKF--NPEFKAVI 779

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL---VIVDEQHRFGVQQR 411
           I G +P +HRR+ L  ++     + I ++ L Q  I  YK  +   V++DE H   ++ R
Sbjct: 780 IDG-VP-SHRRRQLATLS--DYDVAITSYNLLQKDIDVYKDFVFDYVVLDEAHH--IKNR 833

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL-VLTSLGDI 443
                K+     + H L++T TPI  +L  L SL D 
Sbjct: 834 TTRNAKSVKMIRSGHRLILTGTPIENSLEELWSLFDF 870


>gi|83954478|ref|ZP_00963189.1| primosomal protein N' [Sulfitobacter sp. NAS-14.1]
 gi|83840762|gb|EAP79933.1| primosomal protein N' [Sulfitobacter sp. NAS-14.1]
          Length = 732

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 17/145 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L+G  GSGKT V L A+AAA+++G QA+++ P   L +Q   F+ +             
Sbjct: 222 LLRGVTGSGKTEVYLEAVAAALKSGRQALVLLPEIALTEQ---FLHRVQARFGAKPAEWH 278

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
                  RR+  + +  GQA ++IG   ALF   + +  L L++VDE+H    +Q   + 
Sbjct: 279 SGATMTERRRIWKMVGQGQAQVVIGARSALF---LPFQNLGLIVVDEEHDTSYKQEEGVL 335

Query: 416 QKA----------TAPHVLLMTATP 430
             A              V+L +ATP
Sbjct: 336 YNARDMAVLRASICGAQVVLASATP 360


>gi|302892891|ref|XP_003045327.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256726252|gb|EEU39614.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 596

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 52/350 (14%)

Query: 300 GDVGSGKTLVALIAMAAAVEA-GGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            + GSGKT+   +    AV A GG+   AVI++P   LA Q +  + +      +    +
Sbjct: 220 AETGSGKTMAFALPCVEAVSAIGGKSTKAVIVSPTRELAMQTHTQMAQVAALNGLKCVCL 279

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---G 407
            G   +  +R  L R     A II+ T       +  D++   +   V++DE  R    G
Sbjct: 280 FGGASKDDQRAQLRR----GADIIVATPGRLKDFMSDDTVDLSQAAFVVLDEADRMLDKG 335

Query: 408 VQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI- 462
            ++ +K    +  P      L+ TAT       L S   +   KIT   +G++     + 
Sbjct: 336 FEEDIKQILGSCPPREQRQTLMFTATWPQSVQALASSFMVSPVKITIGSSGKETAGGAVE 395

Query: 463 IPIN-RIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNFRSVV----ERFNSLHEHF 514
           +  N RI + +E    VL   +K + +   ++E    K+ N R +V    ++  +  E+F
Sbjct: 396 LQANARISQSVE----VLEPREKEFRLLQLLKEHQQGKQKNDRILVFCLYKKEATRVENF 451

Query: 515 TSSIAI----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII------ 564
            S   +    IHG +    +   +++FK G   +L+AT V   G+D+ +  ++I      
Sbjct: 452 LSRKGVRVCGIHGDLRQEQRTKSLEAFKTGVTPVLVATDVAARGLDIPEVKLVINVTFPL 511

Query: 565 -IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            IE+        +H++ GR GR  +    I  +      +S + +++L+ 
Sbjct: 512 TIED-------YVHRI-GRTGRAGKTGQAITFFTVEDKSHSGSLVNILRG 553


>gi|237805059|ref|YP_002889213.1| putative helicase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273359|emb|CAX10274.1| putative helicase [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 1163

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAA--VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL  +IA+  +   + GG ++I+ P  ++     EF K   +   ++V+ 
Sbjct: 721 ILADDMGLGKTLQTIIAVTQSRLEKGGGCSLIICPTSLVYNWKEEFRKFNPEFKTLVVDG 780

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL---VIVDEQHRFGVQQR 411
           I      + RRK L  +   +  + I ++ L Q  I  YK  L   V++DE H   ++ R
Sbjct: 781 IP-----SQRRKQLASLE--EYDVAITSYNLLQKDIDIYKDFLFDYVVLDEAHH--IKNR 831

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL-VLTSLGDI 443
                K+     A H L++T TPI  +L  L SL D 
Sbjct: 832 TTRNAKSVKMIRACHRLILTGTPIENSLEELWSLFDF 868


>gi|332159734|ref|YP_004296311.1| primosome assembly protein PriA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325663964|gb|ADZ40608.1| primosome assembly protein PriA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330858965|emb|CBX69327.1| primosomal protein N' [Yersinia enterocolitica W22703]
          Length = 732

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 111/516 (21%), Positives = 202/516 (39%), Gaps = 130/516 (25%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I  + +Q    L  L G  GSGKT V L  +   +  G QA+++ P IG+  Q
Sbjct: 203 QATAVGAIRSEDTQFAAWL--LAGVTGSGKTEVYLSVLENILAQGRQALVLVPEIGLTPQ 260

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
                I ++ +     VE++   +  + R     R  +G+A I+IGT  ALF     + +
Sbjct: 261 T----IARFRERFNAPVEVLHSGLNDSERLSVWLRARNGEAAIVIGTRSALF---TPFSR 313

Query: 395 LILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L ++I+DE+H          R+  +       +     +++ TATP   TL    +G   
Sbjct: 314 LGVIIIDEEHDSSYKQQEGWRYHARDLAVFRAREEGIPIVMGTATPALETLHNVQMGKYR 373

Query: 445 ISKITEKPAGRKP-------IKTVIIPINRIDEVIERLK--------VVLSEGKKAY--- 486
              ++++    KP       +K + + +     +++R+K        V+L   ++ Y   
Sbjct: 374 QLTLSKRAGNAKPAVQHLLDLKGLPLKVGLSQPLLKRIKAHLQADNQVILFLNRRGYAPA 433

Query: 487 -------WICPQIEEKKESNFRSVVERFNSLHEHFTSS----------------IAIIHG 523
                  WI    E ++  ++ ++ + +  L  H   S                +++  G
Sbjct: 434 LLCHECGWIA---ECQRCDHYYTLHQNYRQLRCHHCDSQRPVPQQCPKCGSTHLVSVGVG 490

Query: 524 R---------------MSDIDKESV---------MDSFKNGTCKLLIATTVIEVGIDVVD 559
                           ++ ID+++          +     G  ++LI T ++  G    D
Sbjct: 491 TEQLENELAPLFPDTPITRIDRDTTSRKGSLEQHLADVHQGGARILIGTQMLAKGHHFPD 550

Query: 560 ASIIII------------ENAEHFGLAQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYT 606
            +++ +             +AE F  AQL+ Q+ GR GR  +    IL  H P     + 
Sbjct: 551 VTLVALLDVDGALFSADFRSAERF--AQLYTQVSGRAGRAGKQGEVILQTHHP----EHP 604

Query: 607 RLSV-LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD------------ 653
            L + L+   D F  A++ L +RK      +        +I + E HD            
Sbjct: 605 LLQILLQQGYDAF--AKQALAERKS-----VFLPPYTSHIIVRSEDHDNQQSALFLQQLR 657

Query: 654 SLLEIA--RKDAKHILTQDPDLTSVRGQSIRILLYL 687
           +LLE +  + DA  I+   P L + RG   R  L L
Sbjct: 658 NLLETSPLKDDALWIMGPVPALQAKRGGRFRWQLLL 693


>gi|302502754|ref|XP_003013338.1| hypothetical protein ARB_00523 [Arthroderma benhamiae CBS 112371]
 gi|291176901|gb|EFE32698.1| hypothetical protein ARB_00523 [Arthroderma benhamiae CBS 112371]
          Length = 455

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 122/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    V+      QA+I+AP   LAQQ  + +        +   
Sbjct: 64  IAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMNVDCH 123

Query: 354 IITGNMPQAHRRKALERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
              G        KAL+          G+ H +I    L  D I+ +  +L   DE    G
Sbjct: 124 ACIGGTNVREDMKALQDGPQVVVGTPGRVHDMIQRRVLKTDHIKMF--VLDEADEMLSRG 181

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             +++    +   ++T   V+L++AT  P           D+ ++T K   R P++   I
Sbjct: 182 FTEQIYDIFQFLPQST--QVVLLSATMPP-----------DVLEVTTK-FMRDPVR---I 224

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      +K  W    + +  E+          N R  V+      + 
Sbjct: 225 LVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLQA 284

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 285 RDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335


>gi|256545172|ref|ZP_05472538.1| primosomal protein N, superfamily II helicase [Anaerococcus
           vaginalis ATCC 51170]
 gi|256399213|gb|EEU12824.1| primosomal protein N, superfamily II helicase [Anaerococcus
           vaginalis ATCC 51170]
          Length = 779

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 23/199 (11%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP- 329
           FS    Q  A   I+++ +       +L+G  GSGKT V L  +   ++ G  ++I+ P 
Sbjct: 243 FSLNNEQGQAFNKIIKNPNDS----YLLKGVTGSGKTEVFLQIVEENLKKGKDSIILVPE 298

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQD 388
           I +  Q    F  ++ Q     + I+   + Q  R +    I +G+  I++G   A+F  
Sbjct: 299 ISLTPQTIERFQGRFKQK----IAIMHSRLSQKERFQQWRMIKNGEVKIVVGARSAIFA- 353

Query: 389 SIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
              +  L L+I+DE+H          +F   +     +K     ++  +ATP  +T+   
Sbjct: 354 --PFKNLGLIIIDEEHDKSYISSQDPKFHTDELALFRKKYNKATLIFASATPSIKTMTKA 411

Query: 439 SLGDIDISKITEKPAGRKP 457
             GD  + ++  +  G+ P
Sbjct: 412 LDGDYKLLELKNRVNGKLP 430


>gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
           [Aliivibrio salmonicida LFI1238]
 gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
           [Aliivibrio salmonicida LFI1238]
          Length = 495

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 124/287 (43%), Gaps = 33/287 (11%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHI 378
           +A+I+ P   LA Q +E ++KY+ N  +  +++ G +   PQ  R RK ++ +      +
Sbjct: 75  RALILTPTRELAAQVHESVEKYSVNLPLTSDVVFGGVKANPQMQRLRKGVDVLVATPGRL 134

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           +       Q++I++ +L ++++DE  R    G    +K           ++   P  R  
Sbjct: 135 L---DLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKK----------ILNKLPKNRQN 181

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           +L S    D  +   K     P++  +   N   E +E+   V+ + KKA  +   I   
Sbjct: 182 LLFSATFSDEIRQLAKGLVNNPVEISVATRNTTAETVEQSVYVVDKTKKARVLTKLI--- 238

Query: 496 KESNFRSVV---------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           K+++++ V+          R     E    S A IHG  S   +   + +FK+G  ++L+
Sbjct: 239 KDNDWKQVLVFSKTKHGANRLAKTLEEKGISSAAIHGNKSQGARTKALANFKSGQVRVLV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           AT +   G+D+     +I  +        +H++ GR GR       I
Sbjct: 299 ATDIAARGLDIEQLPQVINVDLPKVPEDYVHRI-GRTGRAGATGKAI 344


>gi|304311991|ref|YP_003811589.1| Primosomal protein N\' [gamma proteobacterium HdN1]
 gi|301797724|emb|CBL45946.1| Primosomal protein N\' [gamma proteobacterium HdN1]
          Length = 785

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 10/142 (7%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP- 329
            S    Q++A+  I    S +   + +L+G  GSGKT V L A+A  V+ G QA+++ P 
Sbjct: 210 LSANPEQQAALDAIC---SHQGFKVWLLEGVTGSGKTEVYLQAIAHCVQQGHQALVLVPE 266

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           IG+  Q     I ++ +  ++ +  +   +    R  A      G+A IIIGT +    +
Sbjct: 267 IGLTPQT----IGRFQRRFRVPIAALHSGLSDRERLHAWRNSKSGKARIIIGTRSAVFAA 322

Query: 390 IQYYKLILVIVDEQHRFGVQQR 411
           +   +L L+++DE+H    +Q+
Sbjct: 323 VP--QLGLIVIDEEHDTSFKQQ 342


>gi|296087640|emb|CBI34896.3| unnamed protein product [Vitis vinifera]
          Length = 1180

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 135/307 (43%), Gaps = 38/307 (12%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI        +    + G   ++++P   LA Q  +   K+ +++++    
Sbjct: 68  TGSGKTLGYLIPGFIHLKRIRNNPQMGPTVLVLSPTRELATQIQDEAVKFGRSSRLSCTC 127

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--- 406
           + G  P+  + + L+R     A I++ T     D ++  ++ L     +++DE  R    
Sbjct: 128 LYGGAPKGPQLRDLDR----GADIVVATPGRLNDILEMRRVSLRQVSYLVLDEADRMLDM 183

Query: 407 GVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPIK 459
           G + ++ K+ ++  A    LM     P+ +      +L +   ++I  + E  A +   +
Sbjct: 184 GFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKAITQ 243

Query: 460 TV-IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            V ++P     + +E++      G K    C   ++  +   R++   F +         
Sbjct: 244 YVEVLPYMEKHKRLEQILRSQEPGSKIIIFC-STKKMCDQLARNLTRPFGA--------- 293

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A IHG  S  +++ V++ F+ G   +L+AT V   G+D+ D  ++I  +        +H+
Sbjct: 294 AAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHR 353

Query: 579 LRGRVGR 585
           + GR GR
Sbjct: 354 I-GRTGR 359


>gi|194376400|dbj|BAG62959.1| unnamed protein product [Homo sapiens]
          Length = 711

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 59/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   + +         ++AP   LA Q  +  K  T+ 
Sbjct: 178 IAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK 237

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             +      G   Q+     +  I +G   I++GT    +D +Q  +L L     V++DE
Sbjct: 238 LSVAW-FYGGTSYQSQ----INHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDE 291

Query: 403 QHRFGVQQRLKL---------------TQKATAPHVLLMTAT------PIPRTLVLTSLG 441
                V Q L L               T     P  LL +AT       + +  + +   
Sbjct: 292 -----VDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 346

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN 499
            +D + K+T+K A       +    ++   VI + L+V      +A   C   E KK   
Sbjct: 347 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFC---ETKK--- 400

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +V E   +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +
Sbjct: 401 --NVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 456

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +      + +H+  GR GR      CI  Y P
Sbjct: 457 VDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQP 494


>gi|194868374|ref|XP_001972279.1| GG13972 [Drosophila erecta]
 gi|190654062|gb|EDV51305.1| GG13972 [Drosophila erecta]
          Length = 1079

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 155/346 (44%), Gaps = 59/346 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PTK Q +AI   L +M        I+Q   G+GKTL+ +IA              +I+ 
Sbjct: 47  TPTKIQAAAIPMALANMD------LIIQSKSGTGKTLIYVIAAMQGYHPRMTRPHTLIVV 100

Query: 329 P---IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA- 384
           P   + I  +  + ++ +  ++ +    I   ++ +  RR    R+       IIGT   
Sbjct: 101 PTRELAIQVEDTFFYLCESFRDFKCAAFIGGTDVSKDRRRMQASRV-------IIGTPGR 153

Query: 385 ---LFQDSI-QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
              L+Q+ +    KL L+++DE  +    + L+ T         L+ A P  R ++  S 
Sbjct: 154 LLHLYQNRVLDVSKLGLLVLDEADQLYQTKSLQDTVSK------LIEALPKNRQIIACSA 207

Query: 441 G---DID--ISKITEKPA--GRKPIKTVIIPI-----------NRIDEVIERLKVVLSEG 482
               D+D  ++KI  KP         TV++ I           N ++E+  +L+V+   G
Sbjct: 208 TYDQDLDERLAKIMHKPMLISNSERATVLLGIRQFVYELPQQTNSVEEMRLKLQVL---G 264

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKN 539
           +    I  Q+  ++   F S   R +S   + T+S     +I G M   ++ +V + ++N
Sbjct: 265 Q----IFNQLPYEQAVIFASSQMRADSYKNYLTASGVECHLISGAMDQSERLNVFEGYRN 320

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            T ++L+AT ++  G+D   A+++I  +     +  LH++ GR GR
Sbjct: 321 FTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRI-GRAGR 365


>gi|16124601|ref|NP_419165.1| primosome assembly protein PriA [Caulobacter crescentus CB15]
 gi|221233290|ref|YP_002515726.1| primosome assembly protein PriA [Caulobacter crescentus NA1000]
 gi|13421497|gb|AAK22333.1| primosomal protein N' [Caulobacter crescentus CB15]
 gi|220962462|gb|ACL93818.1| primosomal protein N' [Caulobacter crescentus NA1000]
          Length = 719

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 21/177 (11%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRM-LRILQGDVGSGKTLVALIAMAAAV-EAGGQAV 325
           ++P       ++A  D+L+DM +       +L G  GSGKT V L A+A A+ +   Q +
Sbjct: 180 SLPARALNPGQAACVDVLKDMLESGGFQAALLDGVTGSGKTEVYLEAVAEALKDPETQVL 239

Query: 326 IMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH- 383
           ++ P   L Q     + ++ Q    +  E  +G  P   RR+  E +A G A I++G   
Sbjct: 240 VLLPEIALTQA---VMARFEQRFGALPAEWHSGVSPP-RRRQVWEAVAGGNARIVVGARS 295

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------TAPHVLLMTATP 430
           ALF   + + KL L++VDE+H    +Q      +A              VLL +ATP
Sbjct: 296 ALF---LPFRKLRLIVVDEEHDSSFKQEEGFIYQARDLAVARAKIEGASVLLASATP 349


>gi|227879149|ref|ZP_03997031.1| ATP-dependent helicase [Lactobacillus crispatus JV-V01]
 gi|256843180|ref|ZP_05548668.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus 125-2-CHN]
 gi|256850221|ref|ZP_05555650.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus MV-1A-US]
 gi|262046387|ref|ZP_06019349.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus MV-3A-US]
 gi|293381149|ref|ZP_06627160.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus 214-1]
 gi|227861265|gb|EEJ68902.1| ATP-dependent helicase [Lactobacillus crispatus JV-V01]
 gi|256614600|gb|EEU19801.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus 125-2-CHN]
 gi|256712858|gb|EEU27850.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus MV-1A-US]
 gi|260573258|gb|EEX29816.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus MV-3A-US]
 gi|290922289|gb|EFD99280.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus 214-1]
          Length = 589

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 120/326 (36%), Gaps = 59/326 (18%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G GK++   I   A +  G   VI   I ++  Q    I    QN  I    +    PQ
Sbjct: 39  TGGGKSMCYQIP--ALINPGVTLVISPLISLMKDQ----IDNLKQNG-INAAALNSTTPQ 91

Query: 362 AHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQH---------RFG 407
                 L +   G+  +I  T        F+  + +  + LV VDE H         R  
Sbjct: 92  EEVNPILRQAYEGKIKLIYITPERLAIDYFRYQLNFLDIDLVAVDEAHCISQWGHDFRPA 151

Query: 408 VQQRLK-LTQKATAPHVLLMTATPIP--------------RTLVLTSLGDIDISKITEKP 452
            +Q L  +    + P++L +TAT  P                +++TS    +IS      
Sbjct: 152 YRQLLDGINSLKSRPNILALTATATPAVQDDICEQLNIPKENMIVTSFARPNIS------ 205

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
                 K V  P N    + E +K    +    Y           +N R  VE       
Sbjct: 206 -----FKVVNSPQNTPLYISEYIKAHQDKAGIIY-----------TNTRKKVESLTDYLA 249

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               S+   HG M   ++  V ++F+    ++++AT    +GID  +   +I  ++    
Sbjct: 250 KKGISVGAYHGGMDSSERSQVQEAFQFDEFQVIVATNAFGMGIDKSNVRFVIHASSAR-N 308

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
           +   +Q  GR GR  E S  IL+YHP
Sbjct: 309 MESYYQEAGRAGRDGEESEAILIYHP 334


>gi|76789448|ref|YP_328534.1| SWF/SNF family helicase [Chlamydia trachomatis A/HAR-13]
 gi|76167978|gb|AAX50986.1| SWF/SNF family helicase [Chlamydia trachomatis A/HAR-13]
          Length = 1163

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAA--VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL  +IA+  +   + GG ++I+ P  ++     EF K   +   ++V+ 
Sbjct: 721 ILADDMGLGKTLQTIIAVTQSRLEKGGGCSLIICPTSLVYNWKEEFRKFNPEFKTLVVDG 780

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL---VIVDEQHRFGVQQR 411
           I      + RRK L  +   +  + I ++ L Q  I  YK  L   V++DE H   ++ R
Sbjct: 781 IP-----SQRRKQLASLE--EYDVAITSYNLLQKDIDIYKDFLFDYVVLDEAHH--IKNR 831

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL-VLTSLGDI 443
                K+     A H L++T TPI  +L  L SL D 
Sbjct: 832 TTRNAKSVKMIRACHRLILTGTPIENSLEELWSLFDF 868


>gi|323137907|ref|ZP_08072982.1| primosomal protein N' [Methylocystis sp. ATCC 49242]
 gi|322396910|gb|EFX99436.1| primosomal protein N' [Methylocystis sp. ATCC 49242]
          Length = 760

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 31/208 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  G+GKT V   A+AAA++ GGQA++M P I + AQ    F  ++ +      E  
Sbjct: 234 LLEGVTGAGKTEVYFEAIAAALKEGGQALVMMPEIALTAQFLERFATRFGEKP---AEWH 290

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +G  P+  R +     A G   ++ G   ALF   + +  L L++VDE+H    +Q   +
Sbjct: 291 SGVSPR-KRARIWRAAATGDLSVVAGARSALF---LPFRDLRLIVVDEEHEGAYKQDDGV 346

Query: 415 TQKATAPHVL----------LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           +  A    V+          L +ATP   T V    G     K+  + AG +P+      
Sbjct: 347 SYHARDMAVVRARMEDATIALASATPSIETRVNAQRGRYGHLKLDAR-AGSRPMP----- 400

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQI 492
                 ++E + + +    +  WI P++
Sbjct: 401 ------LLESIDMRVEGPPRGRWIAPRL 422


>gi|261314221|ref|ZP_05953418.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261303247|gb|EEY06744.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
          Length = 462

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 128/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 89  RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 144

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 145 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 196

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 197 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 244

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 245 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 304

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV  +S ++  +        +H++ GR GR     + I LY P
Sbjct: 305 DGTLRILVATDIAARGIDVPGSSHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 363


>gi|126444520|ref|YP_001061297.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 668]
 gi|126224011|gb|ABN87516.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 668]
          Length = 465

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 136/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + I++  +  + + V
Sbjct: 49  IAQAKTGSGKTAAFSLALLARIDARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKV 108

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHII+GT     D +    L L     +++DE  R  
Sbjct: 109 LTLCGGTPMRPQTQSLE---HG-AHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRML 164

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K      +     P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 165 DMGFFDDIAK------VARQCPPTRQTLLFSATYPDGIAKLSQQFL-RHP-KRVKLEERH 216

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 217 DDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 276

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 277 -HGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVYVHRI- 334

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 335 GRTGRADQ 342


>gi|291389880|ref|XP_002711450.1| PREDICTED: DEAD box polypeptide 17 [Oryctolagus cuniculus]
          Length = 835

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 132/339 (38%), Gaps = 59/339 (17%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 315 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 372

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 373 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 428

Query: 401 DEQHR-----FGVQ----------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R     F  Q           R  L   AT P  +   A    R     ++G++++
Sbjct: 429 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 488

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 489 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 530

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 531 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 590

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              +I  +  +     +H++ GR  R     +    + P
Sbjct: 591 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTP 628


>gi|289619969|emb|CBI53413.1| unnamed protein product [Sordaria macrospora]
          Length = 602

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 145/343 (42%), Gaps = 49/343 (14%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +I+AP   LA Q  + I K+ ++++I  
Sbjct: 216 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRN 275

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P+  + + L R       + I T     D ++  K  L     +++DE  R  
Sbjct: 276 TCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRML 331

Query: 407 --GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
             G +             R  L   AT P  +   A+      +  ++G +D++   +IT
Sbjct: 332 DMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRNLASDFLTNFIQVNIGSMDLAANHRIT 391

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +       I  V+    + D +I+ L+ ++   +    I      K+ ++    + RF  
Sbjct: 392 Q-------IVEVVSESEKRDRMIKHLEKIMEGRENTNKILIFTGTKRVAD---DITRF-- 439

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +    +++I HG     +++ V+D FK G   +++AT V   GIDV + + ++  +  
Sbjct: 440 LRQDGWPALSI-HGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYP 498

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     +H++ GR GR     + I  +    SK +   + VL+
Sbjct: 499 NNSEDYIHRI-GRTGRAGAKGTAITFFTTDNSKQARELVGVLQ 540


>gi|302915819|ref|XP_003051720.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732659|gb|EEU46007.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 397

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 147/359 (40%), Gaps = 85/359 (23%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLR--------------------------- 296
           K L ++P    +S      D   DM+ K+ +LR                           
Sbjct: 5   KGLEDVPEGQIESNYDETVDSFDDMNLKSELLRGVYAYGFERPSAIQQRAIMPVIKGHDV 64

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +        I   
Sbjct: 65  IAQAQSGTGKTATFSISVLQKIDTNVKACQALILAPTRELAQQIQKVVVAIGDFMNIECH 124

Query: 354 IITGNMPQAHRRKALERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
              G        KAL+          G+ H +I    L  DS++ +  +L   DE    G
Sbjct: 125 ACIGGTSVREDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDSMKMF--VLDEADEMLSRG 182

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P++ ++ 
Sbjct: 183 FTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPVRILV- 227

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------RFN 508
              + DE+         EG K ++I  + EE K      + E               + +
Sbjct: 228 ---KKDELT-------LEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVD 277

Query: 509 SLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 278 WLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 336


>gi|298208437|ref|YP_003716616.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
 gi|83848360|gb|EAP86229.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
          Length = 372

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 140/311 (45%), Gaps = 36/311 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +PT+ QE AI  +L+  +       + Q   G+GKT    + M   + A     QA+++ 
Sbjct: 24  NPTEIQEQAIPVLLEKPTD-----FVGQAQTGTGKTAAYGLPMLELINASKNHVQALVLC 78

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + + K+T+ + +I  E + G      + KAL+R      HII+ T     
Sbjct: 79  PTRELAMQVSKQLFKFTKYSDKIFSETVYGGAQIDKQIKALQR----PTHIIVATPGRLV 134

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP---RT 434
           D ++           ++L   DE    G ++ L   L+      +  L +AT +P   R 
Sbjct: 135 DLMKKKVVDLTNVKTVVLDEADEMLSMGFKKDLDTILSALPATKNRWLFSAT-LPEGIRQ 193

Query: 435 LVLTSLGDIDIS-KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           ++ + L    I  K++ K    K I+   I +   D++   L+ +  +GK+   +  + +
Sbjct: 194 IINSHLSSNAIKIKVSGKNVVNKKIEHKYILVEDADKLTTLLQYLKFKGKERGIVFCKTK 253

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              ++  + ++ +          S   IHG +   +++ VM +FKN + ++L+AT +   
Sbjct: 254 NTTKTLAKQLIAK--------NISADAIHGDLLQKERDKVMRAFKNESLRILVATDLTAR 305

Query: 554 GIDVVDASIII 564
           GIDV D + ++
Sbjct: 306 GIDVEDLAFVV 316


>gi|330443852|ref|YP_004376838.1| primosomal protein N' [Chlamydophila pecorum E58]
 gi|328806962|gb|AEB41135.1| primosomal protein N' [Chlamydophila pecorum E58]
          Length = 747

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 84/209 (40%), Gaps = 20/209 (9%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P  P   Q+ A+  I   +        +L G  GSGKT V + A+  A   G  A+++ P
Sbjct: 209 PLHP--EQQDALSKITSSIKTSRFCTHLLYGITGSGKTEVYIRAIREARALGKSAILLVP 266

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            I +  Q    F   + Q     V I+   +  + + K     A G  HIIIG  +    
Sbjct: 267 EISLTIQTETLFKALFHQE----VGILHHKLSDSDKNKVWREAAEGSIHIIIGPRSALFC 322

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLK-----------LTQKATAPHVLLMTATPIPRTLVL 437
            I+   L L+IVDE+H    +Q              +  K     V+L +ATP   +   
Sbjct: 323 PIK--NLGLIIVDEEHDPAYKQNESSPCYHARDVAVMRGKLCNATVVLGSATPSLESYTN 380

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPIN 466
              G   +S ++ K A   P K  +I +N
Sbjct: 381 ALSGKYTLSILSSKAAAAHPAKISLIDMN 409


>gi|301757526|ref|XP_002914626.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DDX17-like [Ailuropoda melanoleuca]
          Length = 775

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 140/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 255 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 312

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 313 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 368

Query: 401 DEQHRF---GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G + +++            L   AT P  +   A    R     ++G++++
Sbjct: 369 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 428

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 429 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 470

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 471 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 530

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 531 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 582


>gi|261755014|ref|ZP_05998723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|261744767|gb|EEY32693.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
          Length = 517

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 176 RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 231

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 232 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 283

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 284 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 331

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 332 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 391

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 392 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 450


>gi|217077055|ref|YP_002334771.1| ATP-dependent RNA helicase [Thermosipho africanus TCF52B]
 gi|217036908|gb|ACJ75430.1| ATP-dependent RNA helicase [Thermosipho africanus TCF52B]
          Length = 516

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 150/368 (40%), Gaps = 61/368 (16%)

Query: 261 IAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +++K LR I      +PT  QE  I  +L+   +KN    I+Q   G+GKT    I +  
Sbjct: 8   LSEKTLRAINEKGFENPTPVQEKVIPTLLK--KEKNL---IVQAKTGTGKTAAFGIPLIE 62

Query: 317 AVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ---AHRRKALERI 371
            +E  G  QA+I+ P   LA Q  E I    +    I+ I  G   Q    H RK ++  
Sbjct: 63  LLENKGYVQAIILTPTRELALQVSEEINSLKRKKLKILPIYGGQSIQRQIDHLRKGVD-- 120

Query: 372 AHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF----GVQQRLKLTQKATAPH 422
                 I++GT     D     +I   K+   I+DE         +    K+ +  +   
Sbjct: 121 ------IVVGTPGRILDHLERGTIDLSKVDYFILDEADEMLDMGFIDDVEKILKSTSDDK 174

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
             LM +  IP+ +       ID++K   K      I+   +  N    + E++ + L E 
Sbjct: 175 FFLMFSATIPKRI-------IDLAKKYIKNYEVIKIQDKQLTTN----LTEQIYIELRES 223

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--------IHGRMSDIDKESVM 534
            K   +C  I+ ++E  F  +V     +     SS  I        +HG  S   +E V+
Sbjct: 224 DKFEALCRIIDMEEE--FYGMVFCRTKVEVDTVSSKLIERGYDAEALHGDFSQYQRERVL 281

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIE----NAEHFGLAQLHQLRGRVGRGEEIS 590
             F+     +L+AT V   GID+   + +I      N EH+    +H++ GR GR  +  
Sbjct: 282 KKFREKKVNILVATDVAARGIDITGLTHVINYSIPLNPEHY----VHRI-GRTGRAGKEG 336

Query: 591 SCILLYHP 598
             I    P
Sbjct: 337 IAITFVTP 344


>gi|170757010|ref|YP_001781328.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str.
           Okra]
 gi|169122222|gb|ACA46058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum B1 str. Okra]
          Length = 421

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 159/336 (47%), Gaps = 46/336 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT+ Q  AI      ++ +N+ + I Q + G+GKTL  L+ +   +       QA+I+AP
Sbjct: 26  PTEIQAKAI-----PLAMENKDI-IGQSETGTGKTLAYLLPILEKITTEKREMQAIILAP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q    IK  + N+ + V+ +   + +A+ ++ +E++   + HII+G+     + 
Sbjct: 80  THELAMQINNEIKNISSNSNMDVKSM-AIIGEANIKRQIEKLKE-KPHIIVGSPGRILEL 137

Query: 390 IQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTATPIPRTLVLTS 439
           I+  K+       +++DE  +   +  LK+ ++          ++L +AT    TL +  
Sbjct: 138 IKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLMLFSATITESTLNIAK 197

Query: 440 --LGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKVVLSEGKKAYWICPQIEE 494
             + D ++ K+ EK    + IK + I      RI E++ +L +  +  K+A     + EE
Sbjct: 198 DLMKDSEVVKVKEKNTVNENIKHLYITGEHRERI-EILRKL-IAATNPKRAIVFINRNEE 255

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            + +  +        L  H   +  I +G      ++  ++ F++G  ++L+++ +   G
Sbjct: 256 IELTTLK--------LQYHKIKAYGI-YGAAEKEQRKKALEDFRSGKVQILVSSDLSARG 306

Query: 555 IDVVDASII----IIENAEHFGLAQLHQLRGRVGRG 586
           +DV D + I    + EN + +    LH++ GR GR 
Sbjct: 307 LDVKDITHIFNLDLPENPKEY----LHRV-GRTGRA 337


>gi|118443146|ref|YP_877555.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118133602|gb|ABK60646.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 377

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 167/375 (44%), Gaps = 47/375 (12%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           +L+N    PT  Q  +I  I+ + +       I Q   G+GKTL  L+ +   +++    
Sbjct: 18  LLKNNIEVPTDIQVKSIAPIMNNENI------IAQSQTGTGKTLAYLLPLFQRIDSTKRE 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRKALERIAHGQAHII 379
            Q +I+AP   L  Q +  I   ++N+   I    I G   + + ++ +E++   + HII
Sbjct: 72  MQVIILAPTHELVMQIHNEISLLSKNSNSNITSCPIIG---EVNIKRQIEKLKE-KPHII 127

Query: 380 IGTHA-----LFQDSIQYYKLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLMT 427
           +G+       + +  I  + +  +++DE  R         V+  +K T + T   +L+ +
Sbjct: 128 VGSAGRVFELIKKKKISAHTVKTIVLDEGDRLLDKSNAPKVKDVIKTTMRDT--QILMFS 185

Query: 428 ATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           AT   RTL + +  L +  + K+         I  +       D+ IE L+ +L+  K  
Sbjct: 186 ATISQRTLDIANVILKNPKVIKVKSSELMNPNISHMYFQCEARDK-IEILRKLLASIKPK 244

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             I   I +  E +  +   +++ ++ +       I G+ S  D++  +D FK G  ++L
Sbjct: 245 RAIV-FINKPTEIDVTTSKLQYHKINTYS------ISGKTSKEDRKKAIDGFKKGKYEIL 297

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           IA+ V   G+DV + + I   +     +  LH++ GR GRG  + + I +        + 
Sbjct: 298 IASDVAARGLDVSNITHIFNLDLPSDSMDYLHRV-GRCGRGNNLGTAISIV-------TE 349

Query: 606 TRLSVLKNTEDGFLI 620
             LS +K  E+ F I
Sbjct: 350 KELSFIKKYENKFNI 364


>gi|116329332|ref|YP_799052.1| DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330064|ref|YP_799782.1| DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116122076|gb|ABJ80119.1| DNA helicase, Superfamily II [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123753|gb|ABJ75024.1| DNA helicase, Superfamily II [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 621

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 143/359 (39%), Gaps = 58/359 (16%)

Query: 278 ESAIKDILQ----DMSQKNRMLRILQGD-------VGSGKTLVALIAMAAAVEAGGQAVI 326
           ES++K+I       + QK  +  +L G         G GK+L+    + A ++     ++
Sbjct: 13  ESSLKEIWGMSRFRIGQKESIESVLGGKDTLVILPTGGGKSLI--YQLPAVLDRSSLTLV 70

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT--HA 384
           ++P+  L +   + +K       I  E          + + L R + G+  I+  +   A
Sbjct: 71  ISPLIALMKDQVDSLKA----KGIAAEYCNSTQDDLEQLRILSRASTGKIRILYLSPEKA 126

Query: 385 LFQ---DSIQYYKLILVIVDEQH---RFGVQQR---LKLTQKATAPH----VLLMTATPI 431
           L +   + +    L  + VDE H   ++G   R    KL +     H    ++ +TAT  
Sbjct: 127 LSRQIFEILPKLPLCRIAVDEAHCVSQWGHDFRPEYRKLYELRDKYHHQIPIVALTATAT 186

Query: 432 PRTL--VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL------SEGK 483
           PR +  +  SLG  + + I           +V  P N   +  E LK+++      +E  
Sbjct: 187 PRVIQDIFNSLGLKNPTLIKGSFYRENLNFSVRFPQNETSKENELLKLLIRGNFQKTESG 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           KA   C           R  VE   +  +     +   H   +D  +E   + +  G   
Sbjct: 247 KAIIYCAT---------RQKVESIYNFLKKNGFKVGKYHAGRTDSSREKTQNGYNIGKTN 297

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHF----GLAQLHQLRGRVGRGEEISSCILLYHP 598
           +L+AT    +G+D  D  +I+     H+     L   +Q  GR GR  + S+CIL YHP
Sbjct: 298 VLVATNAFGMGLDNPDVRLIV-----HYQIPASLESYYQEAGRAGRDGKSSNCILFYHP 351


>gi|269987038|gb|EEZ93313.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 435

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 135/307 (43%), Gaps = 39/307 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           +++   GSGKT   +I +  ++E   +  A+I+ P   LA Q  E +++  ++ Q+    
Sbjct: 41  VVKSKTGSGKTAAFVIPILNSIEKNERQAAMIITPTRELALQVTEVVREIGRHMQLKAVT 100

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQH 404
           I G     ++   +  I +G A+IIIGT            L  DSI++  L+L  VD   
Sbjct: 101 IYGGASINYQ---IREIRNG-ANIIIGTPGRLIDLMKRRELNTDSIRF--LVLDEVDIML 154

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV- 461
             G    +K  L++       +  +AT IP  +   +L   +        AG   + T+ 
Sbjct: 155 DMGFIDDIKYILSKLPKKRQTMFFSAT-IPEEIKHITLNYTNNPINVNIDAGEVTVNTIQ 213

Query: 462 -IIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
               I    +    L   L+E K  KA   C     K + N     E+ +S+ ++     
Sbjct: 214 HFYSIASGSDKFATLLAYLNEKKPEKAIIFC-----KTQRN----AEKIHSIMQNMGMQA 264

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++HG +S   +E  ++ FK G   +LIAT V   G+D+ + S II  +AE    A +H 
Sbjct: 265 VLMHGGLSQNRREHSLNMFKEG-VNMLIATNVAARGLDIDNVSDIINFDAETDPKAYVH- 322

Query: 579 LRGRVGR 585
              RVGR
Sbjct: 323 ---RVGR 326


>gi|123479212|ref|XP_001322765.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121905617|gb|EAY10542.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 536

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 128/278 (46%), Gaps = 37/278 (13%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +V++ P   LA Q  E I K   N  I    +TG+       +ALE ++H + H+I+ T 
Sbjct: 220 SVVLVPTHELAVQVQEVIDKLGINLGIKSRTLTGSF--RLNDQALE-LSH-ENHVIVATP 275

Query: 384 ALFQDSIQYY-----KLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPR 433
              +D+I+ +     K+  +++DE  +      G Q    L +     H+++ +AT +P 
Sbjct: 276 GRLKDAIEAHLVSVKKVFFIVMDEADKMVDKSLGPQISFILNECPKEKHLMMFSAT-MPH 334

Query: 434 ---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWI 488
              ++V      +    + E     + IK V+    + D    RL ++L    G KA  I
Sbjct: 335 EVLSIVEEFFTKVVTVSVGEIGGASENIKQVVHYCRQAD----RLGLLLKSLRGMKAPII 390

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                  ++S  +S +E  N+    F S  A IHG  S  +++S+++  +N    +L+AT
Sbjct: 391 V--FTNTRDSCEKSAMEIQNN---GFRS--AFIHGGKSQKERDSIVEGIQNNLFDVLVAT 443

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQ-LHQLRGRVGR 585
            VI  GID+ +     +EN  +  L + +H    R+GR
Sbjct: 444 DVISRGIDIPN-----VENVVNLELPRNIHTYVHRIGR 476


>gi|37681196|ref|NP_935805.1| primosome assembly protein PriA [Vibrio vulnificus YJ016]
 gi|37199947|dbj|BAC95776.1| primosomal protein N' [Vibrio vulnificus YJ016]
          Length = 739

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 8/161 (4%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    SQ +    +L+G  GSGKT V L  +   +E G QA+++ P IG
Sbjct: 204 PKLNQEQAIA-IATVNSQTDFGCYLLEGVTGSGKTEVYLNLIKPILEQGKQALVLVPEIG 262

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + V +I   +    R  A        A I+IGT +     I 
Sbjct: 263 LTPQT----INRFRQRFDVPVAVIHSGLNDTERLNAWLSARDKAAGIVIGTRSAL--LIP 316

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           + +L ++IVDE+H    +Q+  L   A    V+      IP
Sbjct: 317 FAQLGIIIVDEEHDASYKQQDSLRYHARDVAVMRAAKEGIP 357


>gi|307728119|ref|YP_003905343.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307582654|gb|ADN56052.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 467

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 135/311 (43%), Gaps = 36/311 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + I++  +  + I V
Sbjct: 50  IAQAKTGSGKTAAFSLALLARLDARNFAVQAMVLCPTRELADQVTQEIRRLARAEENIKV 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G  P   +  +LE   HG AHI++GT     D ++   L L     +++DE  R  
Sbjct: 110 LTLCGGTPMRPQTASLE---HG-AHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRML 165

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIK 459
              F       + Q       LL +AT  P  +V  S   L +    K+ E+    K I+
Sbjct: 166 DMGFFDDIATVVKQCPKERQTLLFSAT-YPEGIVKLSQQFLRNPKEVKLAERHDNTK-IR 223

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHFTSS 517
                +   DE +  + ++L+  +    I  C       +   R ++E   +   H  + 
Sbjct: 224 QRFYEVTE-DERLHAVGLLLNHYRPVSTIAFC-----NTKQQCRDLLEVLRAQGFHALA- 276

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              +HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H
Sbjct: 277 ---LHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVH 333

Query: 578 QLRGRVGRGEE 588
           ++ GR GR ++
Sbjct: 334 RI-GRTGRADQ 343


>gi|83943905|ref|ZP_00956362.1| primosomal protein N' [Sulfitobacter sp. EE-36]
 gi|83845152|gb|EAP83032.1| primosomal protein N' [Sulfitobacter sp. EE-36]
          Length = 716

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 17/145 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L+G  GSGKT V L A+AAA+++G QA+++ P   L +Q   F+ +             
Sbjct: 206 LLRGVTGSGKTEVYLEAVAAALKSGRQALVLLPEIALTEQ---FLHRVQARFGAKPAEWH 262

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
                  RR+  + +  GQA ++IG   ALF   + +  L L++VDE+H    +Q   + 
Sbjct: 263 SGATMTERRRIWKMVGQGQAQVVIGARSALF---LPFQNLGLIVVDEEHDTSYKQEEGVL 319

Query: 416 QKA----------TAPHVLLMTATP 430
             A              V+L +ATP
Sbjct: 320 YNARDMAVLRASICGAQVVLASATP 344


>gi|224009464|ref|XP_002293690.1| eukaryotic translation initiation factor 4A [Thalassiosira
           pseudonana CCMP1335]
 gi|220970362|gb|EED88699.1| eukaryotic translation initiation factor 4A [Thalassiosira
           pseudonana CCMP1335]
          Length = 369

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 157/369 (42%), Gaps = 85/369 (23%)

Query: 260 KIAQKILRNIPF----SPTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIA 313
           +I +++LR I       P+  Q+ AIK  +  +D+        I Q   G+GKT    I 
Sbjct: 2   EIPEELLRGIYAYGFEKPSAIQQRAIKPTMLGRDL--------IAQAQSGTGKTATFAIG 53

Query: 314 MAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
             A ++      Q++I+AP   LAQQ  + +       ++ V    G        + L+ 
Sbjct: 54  TLAKLDPKLRECQSLILAPTRELAQQIQKVVIALGDYMELQVHACVGGTAVRDDIRTLQ- 112

Query: 371 IAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--A 418
              G  H+++GT           AL  DSI+ +   L   DE    G + ++    K   
Sbjct: 113 ---GGVHVVVGTPGRVYDMINRRALRLDSIRQF--FLDEADEMLSRGFKDQIYDIFKFLP 167

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            +  V L +AT +P          +D+ ++T++   R P++ ++    + DE+       
Sbjct: 168 ESVQVCLFSAT-MP----------LDVLEVTQRFM-RDPVRILV----KKDELT------ 205

Query: 479 LSEGKKAYWICPQIEEKK------------------ESNFRSVVERFNSLHEHFTSSIAI 520
             EG K ++I  + EE K                    N R  V+      +    +++ 
Sbjct: 206 -LEGIKQFYIAVEREEWKLDTLCDLYETLTITQAIIYCNTRRKVDWLQEQMQERDFTVSC 264

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQL 576
           +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I      N E++    +
Sbjct: 265 MHGDMDQRERDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTNRENY----I 320

Query: 577 HQLRGRVGR 585
           H++ GR GR
Sbjct: 321 HRI-GRSGR 328


>gi|254507841|ref|ZP_05119971.1| DNA helicase [Vibrio parahaemolyticus 16]
 gi|219549214|gb|EED26209.1| DNA helicase [Vibrio parahaemolyticus 16]
          Length = 643

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 128/313 (40%), Gaps = 39/313 (12%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            GSGK+L   +    AV      ++++P+  L +   EF+K    + QI    I  +  +
Sbjct: 46  TGSGKSLCYQLP---AVMLPHLTLVVSPLLALMKDQLEFLK----SKQIPAASIDSSQTK 98

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQR-- 411
              R+ ++ +  GQ  +++ +     +  F+  I    + L++VDE H    +G   R  
Sbjct: 99  EESRQVMDGVKQGQIKVLMISVERLKNERFRQFISQVPISLLVVDEAHCISEWGHNFRPD 158

Query: 412 ---LKLTQKA-TAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
              L L QK      VLL+TAT     +  +     I+ + I      R  +   + P +
Sbjct: 159 YLKLPLYQKELNIEQVLLLTATATQAVIQDMQQKFSIEPNHIVTTGFYRPNLDISVTPCD 218

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
             D+  E L  +L    KA    P I        +S  E+  +L      +    H  M+
Sbjct: 219 D-DQKPETLVKLLQSNPKA----PTI---VYVTLQSAAEQVATLLRDSGINANAYHAGMN 270

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGR 582
           + D+E +   F  G    ++AT    +G+D  D   +I     H+ L +      Q  GR
Sbjct: 271 NDDREQIQSHFMKGDIDCIVATIAFGMGVDKSDIRRVI-----HYDLPKSIENYAQEIGR 325

Query: 583 VGRGEEISSCILL 595
            GR   +S C+LL
Sbjct: 326 AGRDGNLSHCVLL 338


>gi|158796|gb|AAA29013.1| Mab4611 antigen (vasa) [Drosophila melanogaster]
          Length = 648

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 131/327 (40%), Gaps = 52/327 (15%)

Query: 302 VGSGKTLVALIAMAA-------AVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   L+ + +        +E G  Q  I++P   LA Q +   +K+   + + + 
Sbjct: 278 TGSGKTAAFLLPILSKLLEDPHELELGRPQVCIVSPTRELAIQIFNEARKFAFESYLKIG 337

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHR--- 405
           I+ G     H+ + + R      H++I T     D      I +     V++DE  R   
Sbjct: 338 IVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD 393

Query: 406 --FGVQQRLKLTQKATAP-HVLLMTATPIP-----------RTLVLTSLGDIDISKITEK 451
             F    R  +T     P H  LM +   P           +  V  ++G +        
Sbjct: 394 MGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV-------- 445

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                 +K  I  +N+     +R K++    ++A      +E K+ ++F   +  F S  
Sbjct: 446 GGACSDVKQTIYEVNK---YAKRSKLIEILSEQADGTIVFVETKRGADF---LASFLSEK 499

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E  T+SI   HG      +E  +  FKNG+ K+LIAT+V   G+D+ +   +I  +    
Sbjct: 500 EFPTTSI---HGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSK 556

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHP 598
               +H++ GR GR          +HP
Sbjct: 557 IDDYVHRI-GRTGRVGNNGRATSFFHP 582


>gi|62289973|ref|YP_221766.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699901|ref|YP_414475.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189024215|ref|YP_001934983.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|254689280|ref|ZP_05152534.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 6 str. 870]
 gi|254693764|ref|ZP_05155592.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 3 str. Tulya]
 gi|254697417|ref|ZP_05159245.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730315|ref|ZP_05188893.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|256257530|ref|ZP_05463066.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 9 str. C68]
 gi|297248372|ref|ZP_06932090.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196]
 gi|62196105|gb|AAX74405.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616002|emb|CAJ11028.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Brucella melitensis biovar Abortus 2308]
 gi|189019787|gb|ACD72509.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|297175541|gb|EFH34888.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196]
          Length = 531

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 35/293 (11%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 162 RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 217

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 218 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 269

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P       I ++   +   +K   +   +  
Sbjct: 270 -LFSATMPKEIASLAERLL-RDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAML-- 325

Query: 495 KKESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             +++ RSV+    + H         E     +A IHG  S   ++  ++ F++GT ++L
Sbjct: 326 -TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRIL 384

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 385 VATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|312863883|ref|ZP_07724121.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
           vestibularis F0396]
 gi|311101419|gb|EFQ59624.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
           vestibularis F0396]
          Length = 447

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 151/361 (41%), Gaps = 50/361 (13%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGD--VGSGKTLVALIAMAAAVE 319
           QK L  I F  PT  Q+  I  +        R  R L G+   GSGKT   L+ +   + 
Sbjct: 13  QKALDEIKFKEPTPVQQKLIPVV--------RSGRDLVGESKTGSGKTHTFLLPIFEKLN 64

Query: 320 AGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 Q VI AP   LA Q Y+  K+  +++   + ++   +    +++ +E++   Q 
Sbjct: 65  PESRDVQVVITAPSRELATQIYQATKQIAKHSATEIRVVN-YVGGTDKQRQIEKLKVAQP 123

Query: 377 HIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAP-----HVLLM 426
           HI+IGT     D ++   L +      +VDE         L    K  A       +L+ 
Sbjct: 124 HIVIGTPGRIYDLVKSRDLAIHKAHTFVVDEADMTMDMGFLDTVDKIAASLPKEVQILVF 183

Query: 427 TATPIPRTL---VLTSLGDIDISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVLS 480
           +AT IP+ L   +   L +  + +I         I   ++     N+ ++++E LK    
Sbjct: 184 SAT-IPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVSTKGRNKNEQILEMLK---- 238

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
            G + Y             F +  ER + LH +  S+   +A IHG +   +++ +M+  
Sbjct: 239 -GMQPYLAMI---------FVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQV 288

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K    + ++AT +   GID+   S +I +         +H++ GR GR     + I LY 
Sbjct: 289 KKLEFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLSGTAITLYQ 347

Query: 598 P 598
           P
Sbjct: 348 P 348


>gi|223984537|ref|ZP_03634669.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
           12042]
 gi|223963523|gb|EEF67903.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
           12042]
          Length = 556

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 135/325 (41%), Gaps = 66/325 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHYEFIKKYTQNTQII- 351
           I Q   G+GKT    I +   +E       QA+I++P   LA Q  + I+K+T+  + I 
Sbjct: 42  IGQSQTGTGKTAAFAIPIIEMLEVTDRKRPQALILSPTRELAMQVCDEIRKFTKYKEGIR 101

Query: 352 -VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDE 402
            V +  G   Q   ++ LE +  G A I++GT     D I        Q   L+L   DE
Sbjct: 102 TVAVYGG---QQISKQILE-LKKG-ADIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADE 156

Query: 403 QHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
               G ++ ++   +A       +L +AT +P+ ++  +      S+    P     IKT
Sbjct: 157 MLNMGFREDIETVIEALPQQRQTVLFSAT-MPKPILEIT------SQYQTNPVH---IKT 206

Query: 461 VIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKE-----------------SNFR 501
               IN  +I++V              Y++CP+ E KKE                  N +
Sbjct: 207 PQTQINTPKIEQV--------------YYVCPK-EAKKEILMQLISMQNPHLAMIFCNTK 251

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            +V+   S         A +HG M    +  VMD+FK G   +L+AT V   GIDV    
Sbjct: 252 KMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINILVATDVAARGIDVDSMD 311

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRG 586
           ++   +        +H++ GR GR 
Sbjct: 312 VVFNYDLPQESEYYVHRI-GRTGRA 335


>gi|219113631|ref|XP_002186399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583249|gb|ACI65869.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 414

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 154/358 (43%), Gaps = 63/358 (17%)

Query: 260 KIAQKILRNIPFS-----PTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALI 312
           ++ +++LR I FS     P+  Q+ AIK  +  +D+        I Q   G+GKT    I
Sbjct: 47  ELPEELLRGI-FSYGFEKPSAIQQRAIKPTILAKDL--------IAQAQSGTGKTATFAI 97

Query: 313 AMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
              A ++      QA+I+AP   LAQQ  + +        I V    G        + L+
Sbjct: 98  GTLARLDPKLRECQALILAPTRELAQQIQKVVLALGDYMDIQVHACVGGTAVRDDIRTLQ 157

Query: 370 RIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--ATAP 421
              H      G+   +I   AL  DSI+ +   L   DE    G + ++    K      
Sbjct: 158 AGVHVVVGTPGRVFDMINRRALRLDSIRQF--FLDEADEMLSRGFKDQIYDIFKFLPETV 215

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            V L +AT +P          +D+ ++TE+   R+P++   I + + +  +E +K     
Sbjct: 216 QVCLFSAT-MP----------LDVLEVTERFM-REPVR---ILVKKDELTLEGIKQFYIS 260

Query: 482 GKKAYWICPQIEEKKES----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
             K  W    + +  E+          N R  V+      +    +++ +HG M   +++
Sbjct: 261 VDKEDWKLETLCDLYETLTITQAIIYCNTRRKVDWLQEEMQKRDFTVSCMHGDMDQRERD 320

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            +M  F++G+ ++LI T ++  GIDV   S++I      N E++    +H++ GR GR
Sbjct: 321 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTNRENY----IHRI-GRSGR 373


>gi|170742455|ref|YP_001771110.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168196729|gb|ACA18676.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 482

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 143/347 (41%), Gaps = 44/347 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI  +L     +  +L + Q   G+GKT    + M   +E G       + +
Sbjct: 23  TPTPIQAQAIPHVLA----RRDVLGVAQ--TGTGKTAAFTLPMLTRLEQGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  ++Y  N ++ V ++ G +  A +   + R       ++I T   
Sbjct: 77  ILEPTRELAAQVVENFERYGTNHKLNVALLIGGVSFADQDAKITR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +  KL+L     +++DE  R        +      P +  ++   P  R TL  +
Sbjct: 133 LLDHFERGKLLLTGVELLVIDEADR--------MLDMGFIPDIERIVKLVPFTRQTLFFS 184

Query: 439 SLGDIDISKITEKPAGRKPIK-TVIIPINRIDEVIERLKVVLSEGKKAY-----WICPQI 492
           +    +I ++ +      P++  V  P +    + +RL     EG +        I   +
Sbjct: 185 ATMPPEIQRLADDFL-HNPVRIEVARPASTASTIAQRLVATGGEGHEKRKTLRGLIRGAV 243

Query: 493 EEKKESNF----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           E +    F    R V +   SL  H   ++A +HG M    + + +D+F++G   LL+A+
Sbjct: 244 ELRNGLIFCNRKRDVAQLQRSLANH-GFNVAALHGDMDQRARMAALDAFRSGEVPLLVAS 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   G+D+   S +   +  H     +H++ GR GR     +   L
Sbjct: 303 DVAARGLDIPAVSHVFNFDVPHHAEDYVHRI-GRTGRAGRSGAAFTL 348


>gi|167525138|ref|XP_001746904.1| p68DDX5 RNA helicase [Monosiga brevicollis MX1]
 gi|163774684|gb|EDQ88311.1| p68DDX5 RNA helicase [Monosiga brevicollis MX1]
          Length = 487

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 147/340 (43%), Gaps = 42/340 (12%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            D GSGKTL  ++     +          G  A+++AP   LAQQ  E   KY  +++I 
Sbjct: 105 ADTGSGKTLSFILPAIVHINNQPLLRPGDGPIALVLAPTRELAQQIAEVAHKYGSSSRIK 164

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF 406
              + G  P+  +   LER       ++IGT     D +   K  L     +++DE  R 
Sbjct: 165 TTCVFGGAPKRGQAMDLER----GVELLIGTPGRLIDFLDTRKTNLRRCTYLVLDEADRM 220

Query: 407 ---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
              G + +L+          ++    P  +TL+ ++    ++ ++  +  G+  I+  I 
Sbjct: 221 LDMGFEPQLR---------KIVSQIRPDRQTLMWSATWPKEVQQLAYEFLGQDVIRVQIG 271

Query: 464 PIN-RIDEVIERLKVVLSEGKKA---YWICPQIEEKKESNF-------RSVVERFNSLHE 512
            I    +  I++  +++ +  K    + +  +I  +KE+         R+V +   +L  
Sbjct: 272 AIGLSANHRIKQHVMIMQDYDKQRELFRLLDEIMRQKENKTIIFAETKRNVDDLTRNLRR 331

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               ++ + HG     ++++V+  F++G   +LIAT V   G+DV D   +I  +  +  
Sbjct: 332 EGFPAMCM-HGDKQQRERDTVLAEFRDGRHPILIATDVASRGLDVKDIKYVINFDYPNNS 390

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +H++ GR  RG    +    +    ++ +   +SVL+
Sbjct: 391 EDYVHRI-GRTARGGGEGTAYTFFSSKNARQAKDLVSVLE 429


>gi|270265173|ref|ZP_06193435.1| hypothetical protein SOD_l00230 [Serratia odorifera 4Rx13]
 gi|270040807|gb|EFA13909.1| hypothetical protein SOD_l00230 [Serratia odorifera 4Rx13]
          Length = 731

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 24/197 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ +     V+++
Sbjct: 220 LLAGVTGSGKTEVYLSVLENILAMGKQALVLVPEIGLTPQT----IARFRERFNAPVDVL 275

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              +  + R     R   G+A I+IGT  ALF     + +L ++I+DE+H    +Q+   
Sbjct: 276 HSGLNDSERLAVWLRARSGEAAIVIGTRSALF---TPFSRLGVIIIDEEHDSSYKQQEGW 332

Query: 415 TQKATAPHV----------LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
              A    V          ++ +ATP   TL    LG     K+T++    KP    +I 
Sbjct: 333 RYHARDLAVFRAREENIPMVMGSATPALETLHNVQLGKYRQLKLTQRAGNAKPATQHLID 392

Query: 465 INRIDEVIERLKVVLSE 481
           +  +      LKV LS+
Sbjct: 393 LKGLP-----LKVGLSQ 404


>gi|212550673|ref|YP_002308990.1| excinuclease ABC subunit B [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548911|dbj|BAG83579.1| excinuclease ABC subunit B [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 672

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/227 (20%), Positives = 102/227 (44%), Gaps = 31/227 (13%)

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           ++  P  + ++ATP    L +     I I ++        PI  V   +++ID+++E ++
Sbjct: 381 ESITPQKIFISATPAEYELRMCE--GIIIEQVVRPTGLLDPIIEVRSTLHQIDDLMEEIR 438

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             L + ++                + + E  NS   +     A IH  +  +++  ++D 
Sbjct: 439 QRLEKNERTLVTTLT---------KRMAEELNSYFVNLNIQAAYIHSDIKALERVGIIDE 489

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSC 592
           F+ G   +LI   ++  G+D+ + S++ + +A+  G  +    L Q+ GR  R   I+  
Sbjct: 490 FRRGVFDVLIGVNLLREGLDLPEVSLVAVLDADKEGFLRSYRSLTQIAGRAARN--INGK 547

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           ++ Y   ++K+       ++NT D       D  +R+E ++L  K++
Sbjct: 548 VIFYADKMTKS-------MRNTID-------DTNKRREKQLLYNKRN 580


>gi|311255076|ref|XP_003126098.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Sus
           scrofa]
          Length = 801

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 134/339 (39%), Gaps = 59/339 (17%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 281 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 338

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 339 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 394

Query: 401 DEQHRF---GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G + +++            L   AT P  +   A    R     ++G++++
Sbjct: 395 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 454

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 455 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 496

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 497 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 556

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              +I  +  +     +H++ GR  R     +    + P
Sbjct: 557 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTP 594


>gi|260584741|ref|ZP_05852487.1| primosomal protein [Granulicatella elegans ATCC 700633]
 gi|260157764|gb|EEW92834.1| primosomal protein [Granulicatella elegans ATCC 700633]
          Length = 800

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 73/149 (48%), Gaps = 5/149 (3%)

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            +KI+ + PF   + Q+   + +L++   +   + +LQG  GSGKT V L  +  A++ G
Sbjct: 254 GRKIINSKPFELNEEQKQVFQQVLEEEIDETSHVYLLQGVTGSGKTEVYLQWIGEAIQKG 313

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+++ P   L  Q  +  K+   N    V ++   +    +    ++I  G+A I++G
Sbjct: 314 KSAMMLVPEISLTPQMVQRFKERFGNR---VAVLHSGLNPGEKHDEWQKIKEGRADIVVG 370

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     ++   + ++I+DE+H    +Q
Sbjct: 371 ARSSVFAPLE--NIGIIILDEEHESTYKQ 397


>gi|302878957|ref|YP_003847521.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302581746|gb|ADL55757.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 546

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 141/348 (40%), Gaps = 44/348 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKT----- 307
           +N+   I + I       PT  QE AI +I+   D+        +     GSGKT     
Sbjct: 6   LNLNPSILKAIAETGYTEPTPIQEQAIPEIIAGHDL--------MASAQTGSGKTAAFIL 57

Query: 308 --LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
             L  L   +A    G + +++ P   LAQQ  +   KY +N +  +  I G MP     
Sbjct: 58  PALNRLATPSAMPGKGPRVLVLTPTRELAQQVCDAATKYGKNMRFKIISILGGMPY---- 113

Query: 366 KALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               R+      I++ T       L +  I + +L ++I+DE  R      +   ++  A
Sbjct: 114 PVQNRLLSSHVDILVATPGRLIDHLERGRIDFSRLEMLILDEADRMLDMGFVDDVERIAA 173

Query: 421 PHVLLMTATPIPRTLVLTS------LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                  ATP  R  +L S      +G++  S++ + P  R  +         I++ +  
Sbjct: 174 -------ATPATRQTLLFSATLEGVVGNL-ASRLLKTPK-RINVSAAKDKHENIEQRMMF 224

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKE 531
              V  + K    +    E  +   F +     + L +  ++   S+A +HG MS  ++ 
Sbjct: 225 ADDVAHKNKMLSHLLTDTEVNQALVFTATKRDADGLADQLSAQGHSVAALHGDMSQRERN 284

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             + + +NG  ++L+AT V   G+DV   S +I  +   F    +H++
Sbjct: 285 RTLLNMRNGNVRILVATDVAARGLDVRGISHVINFDLPKFAEDYVHRI 332


>gi|123468960|ref|XP_001317695.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121900435|gb|EAY05472.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 389

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 150/350 (42%), Gaps = 39/350 (11%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           ++ + I +N    P+  Q+ AI  I Q    KN M    Q   GSGKT    I   A + 
Sbjct: 30  ELIEAIKKNGWEKPSPIQQRAIYIISQG---KNIMF---QSQNGSGKTATFSIGTLARLR 83

Query: 320 AGGQA---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
              +    +I++P   LA Q    +K    NT+  V    G        KAL++      
Sbjct: 84  LTSKTTELIIVSPTRELAIQTENTLKSLGANTRACV----GGNSLGADVKALQK----GI 135

Query: 377 HIIIGT-----HALFQDSIQYYKLILVIVDEQHRFGVQQR---LKLTQKATAPHVLLMTA 428
           H + GT       L + +IQ  K+  V++DE        +   + + QK      +++TA
Sbjct: 136 HCVSGTPGRILQLLKEHNIQAEKVQSVVLDEADEMLTSFKSTIMDILQKLPHAQKVIVTA 195

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T      V   + ++  + +      R P     + +  ID+ + R++    +      I
Sbjct: 196 T------VSADVVELATAHLRNSVEIRVPRDE--LTLTGIDQYVVRVENEEWKFDTLIDI 247

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              I  +K   F + VE+ N L      S   +A++HG+M+  D+  + + F++G  ++L
Sbjct: 248 YQSIAIEKAVIFVNSVEKGNWLKGKMVDSGFTVALVHGQMTMDDRAKITEEFRSGEARVL 307

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL--RGRVGR-GEEISSC 592
           IAT V   GIDV + +++I  +        LH++   GR GR G  I+ C
Sbjct: 308 IATDVFSRGIDVRNVTLVINFDFALTCDVYLHRIGRSGRFGRKGLAITLC 357


>gi|27364755|ref|NP_760283.1| primosome assembly protein PriA [Vibrio vulnificus CMCP6]
 gi|27360900|gb|AAO09810.1| primosomal protein N' [Vibrio vulnificus CMCP6]
          Length = 734

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 8/161 (4%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    SQ +    +L+G  GSGKT V L  +   +E G QA+++ P IG
Sbjct: 199 PKLNQEQAIA-IATVNSQTDFGCYLLEGVTGSGKTEVYLNLIKPILEQGKQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + V +I   +    R  A        A I+IGT +     I 
Sbjct: 258 LTPQT----INRFRQRFDVPVAVIHSGLNDTERLNAWLSARDKAAGIVIGTRSAL--LIP 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           + +L ++IVDE+H    +Q+  L   A    V+      IP
Sbjct: 312 FAQLGIIIVDEEHDASYKQQDSLRYHARDVAVMRAAKEGIP 352


>gi|57640241|ref|YP_182719.1| DEAD/DEAH box RNA helicase [Thermococcus kodakarensis KOD1]
 gi|57158565|dbj|BAD84495.1| DEAD/DEAH box RNA helicase [Thermococcus kodakarensis KOD1]
          Length = 406

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 134/328 (40%), Gaps = 53/328 (16%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   GSGKT    + +  +++      QA+I+ P   LA Q  + ++      +I V  +
Sbjct: 45  QSKTGSGKTAAFGLPILDSIDESIREVQALILTPTRELAIQVTDELRSLRGKRRIYVYSV 104

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---G 407
            G  P   + +ALE    G  HI++GT     D I    L L      ++DE  R    G
Sbjct: 105 YGGQPIGPQIRALE----GGVHIVVGTPGRVLDHINRGTLNLDGVRFFVLDEADRMLDMG 160

Query: 408 VQQRLKLTQKATAPH--VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            Q+ ++   +AT     VL+ +AT +P  ++L +       K    P      +  ++P 
Sbjct: 161 FQEDIEAIFRATPKEKRVLMFSAT-MPMDVLLLA------KKYMRNPEVVIVSRDELVPG 213

Query: 466 NRIDEVIERL---------KVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHF 514
               E IE +         K++  E  + Y I  C    E +E + R     F +     
Sbjct: 214 EVEQEYIEAVPHRRFDLLTKILSDESNEFYGIVFCQTKAETRELSMRLRAAGFRA----- 268

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
                 ++G MS   +E   + FK    K+L+AT V   G+DV + + +    I  N E 
Sbjct: 269 ----EALNGDMSQPAREKTFNRFKARKTKILVATDVAARGLDVPEITHVINYSIPMNPEQ 324

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +    +H++ GR GR  +    I    P
Sbjct: 325 Y----IHRI-GRTGRMGKKGKAITFIAP 347


>gi|317501924|ref|ZP_07960108.1| primosomal protein N [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896604|gb|EFV18691.1| primosomal protein N [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 739

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 19/206 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T+ Q+ AI    +D     R   +L G  GSGKT V +  + + V+ G QA+++ P I +
Sbjct: 206 TQEQKRAIMRFCKDYENGIRKTYLLHGVTGSGKTEVYMEMIQSVVDKGKQAIVLIPEIAL 265

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F +++       V ++   +    R   + R   G+  ++IG   ALF     
Sbjct: 266 TYQTVMRFYRRFKDR----VSVMNSRLSAGERYDQMMRAKAGEVDVMIGPRSALF---TP 318

Query: 392 YYKLILVIVDEQHR--FGVQQRLKLTQKATA--------PHVLLMTATPIPRTLVLTSLG 441
           +  L L+++DE+H   +  +Q  +   + TA          V+L +ATP    +     G
Sbjct: 319 FPNLGLIVIDEEHEPTYKSEQTPRYHARETALRRAQTEGASVVLGSATPSMEAMYRAKNG 378

Query: 442 DIDISKITEKPAGRKPIKTVIIPINR 467
           +  + ++  +   + P +   + + +
Sbjct: 379 EYVLMEMKNRSKMQDPAEVYTVDMRK 404


>gi|308466625|ref|XP_003095565.1| CRE-DRH-3 protein [Caenorhabditis remanei]
 gi|308245160|gb|EFO89112.1| CRE-DRH-3 protein [Caenorhabditis remanei]
          Length = 979

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +++ V++ F +G  K+++AT+V+E G+DV   ++II  N       QL Q RGR  R + 
Sbjct: 653 EQQRVLEQFNSGKLKVIVATSVVEEGLDVTSCNLIIKYNCSSASAIQLVQRRGR-ARAKN 711

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
             S +L  H           S ++N E   +++E+ ++Q     +  I+Q+G     + +
Sbjct: 712 SRSVLLAVH-----------SRVQNDESNAMLSEKFMRQC----VKIIEQNGNK---MLE 753

Query: 649 PELHDSLLEIARKDA 663
            E+H + ++I R+ A
Sbjct: 754 KEVHKATVDIQRQRA 768


>gi|251778643|ref|ZP_04821563.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082958|gb|EES48848.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 480

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 146/341 (42%), Gaps = 41/341 (12%)

Query: 264 KILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---E 319
           K + N+ + +P++ QE AI ++L     +N+ L +++   GSGKT    I +   +   E
Sbjct: 16  KAIDNLGYKTPSEVQEKAIPEVL-----RNKDL-VVKSQTGSGKTASFGIPLCEKIDWDE 69

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q +++AP   LA Q  E I    +  +I    I G      + + L++    + HI+
Sbjct: 70  NKPQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ----KTHIV 125

Query: 380 IGTHALFQD-----SIQYYKLILVIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATP 430
           +GT     D     S+   K+   ++DE         ++Q   + ++     V L+ +  
Sbjct: 126 VGTPGRVLDHIDRGSLDVSKINYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTLLFSAT 185

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IP           +I  + +K   R PI   I   N   + +      +   +K   +  
Sbjct: 186 IPD----------EIKNLCDKHMNR-PIDIAIKSQNLTSDNVSHYAYHVGYNQKLDSLNN 234

Query: 491 -QIEEKKESN--FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             I E  E++  F    E  +++HE+      S   IHG M   D+   M+ F+ G  ++
Sbjct: 235 ILISEMPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRI 294

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           L+AT +   GID+   + +I  +      A +H++ GR GR
Sbjct: 295 LVATDIASRGIDIEGITHVINYDIPVEKEAYVHRI-GRTGR 334


>gi|237803138|ref|YP_002888332.1| putative helicase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274372|emb|CAX11167.1| putative helicase [Chlamydia trachomatis B/Jali20/OT]
          Length = 1163

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 18/148 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAA--VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL  +IA+  +   + GG ++I+ P  ++     EF K   +   ++V+ 
Sbjct: 721 ILADDMGLGKTLQTIIAVTQSRLEKGGGCSLIICPTSLVYNWKEEFRKFNPEFKTLVVDG 780

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL---VIVDEQHRFGVQQR 411
           I      + RRK L  +   +  + I ++ L Q  I  YK  L   V++DE H   ++ R
Sbjct: 781 IP-----SQRRKQLASLE--EYDVAITSYNLLQKDIDIYKDFLFDYVVLDEAHH--IKNR 831

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL 435
                K+     A H L++T TPI  +L
Sbjct: 832 TTRNAKSVKMIRACHRLILTGTPIENSL 859


>gi|50293589|ref|XP_449206.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74608568|sp|Q6FKN8|DBP5_CANGA RecName: Full=ATP-dependent RNA helicase DBP5
 gi|49528519|emb|CAG62178.1| unnamed protein product [Candida glabrata]
          Length = 504

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 152/366 (41%), Gaps = 51/366 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+K QE A+  +L +  +      I Q   G+GKT    + M + V+      QA+ +AP
Sbjct: 137 PSKIQERALPLLLSNPPRN----MIAQSQSGTGKTAAFSLTMLSRVDETQNVPQAICLAP 192

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E I++  + T+I  ++I  +        + E+     A++++GT     D 
Sbjct: 193 SRELARQTLEVIQEMGKYTKITTQLIVPD--------SFEKNTKINANVVVGTPGTLLDL 244

Query: 390 I-----QYYKLILVIVDEQHRFGVQQRL--------KLTQKATAPHVLLMTATPIPRTLV 436
           I     Q   + + ++DE      +Q L        K   K T   +   T     +   
Sbjct: 245 IRRKLIQLQNVKIFVLDEADNMLDKQGLGDQCIRVKKFLPKDTQLVLFSATFADAVKAYA 304

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRID---EVIERLKVVLSEGKKAYWICPQIE 493
              + + +  ++       K IK + +  N      EV+  L  +L+ G    ++     
Sbjct: 305 QKVIPNANTLELQRNEVNVKAIKQLYMDCNDEAHKYEVLCELYGLLTIGSSIIFVA---- 360

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           +K  +N       +  L +H    ++I+H  +   +++ ++D F+ G  K+LI T V+  
Sbjct: 361 KKDTANLL-----YGKL-KHEGHQVSILHSDLRTDERDRLIDDFREGRSKVLITTNVLAR 414

Query: 554 GIDVVDASIII------IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           GID+   S+++      + N        +H++ GR GR       I   H    K S+  
Sbjct: 415 GIDIPSVSMVVNYDLPTLPNGMPDYATYVHRI-GRTGRFGRTGVAISFVH---DKKSFKI 470

Query: 608 LSVLKN 613
           LS +++
Sbjct: 471 LSAIQD 476


>gi|320155147|ref|YP_004187526.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio vulnificus MO6-24/O]
 gi|319930459|gb|ADV85323.1| helicase PriA essential for OriC / DnaA-independent DNA replication
           [Vibrio vulnificus MO6-24/O]
          Length = 734

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 8/161 (4%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    SQ      +L+G  GSGKT V L  +   +E G QA+++ P IG
Sbjct: 199 PKLNQEQAIA-IATVNSQTGFACYLLEGVTGSGKTEVYLNLIKPILEQGKQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + V +I   +    R  A        A I+IGT +     I 
Sbjct: 258 LTPQT----INRFRQRFDVPVAVIHSGLNDTERLNAWLSARDKAAGIVIGTRSAL--LIP 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           + +L ++IVDE+H    +Q+  L   A    V+      IP
Sbjct: 312 FAQLGIIIVDEEHDASYKQQDSLRYHARDVAVMRAAKEGIP 352


>gi|299133793|ref|ZP_07026987.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
 gi|298591629|gb|EFI51830.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
          Length = 472

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 141/357 (39%), Gaps = 58/357 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI  +L     +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 23  TPTPIQEQAIPHVLD----RRDVLGIAQ--TGTGKTAAFVLPMLTLLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   +Y    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKENFDRYGVGQKLNVALLIGGVSFGDQDAKLGR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +  KL+     L+++DE  R        +      P +  +    P  R TL  T
Sbjct: 133 LLDHTERGKLLMTGVELLVIDEADR--------MLDMGFIPDIERICKLVPFTRQTLFFT 184

Query: 439 SLGDIDISKITE-------KPAGRKPIKTVIIPIN-------RIDEVIERLKVVLSEGK- 483
           +    +I +ITE       K    KP  T +              E  E L+ +L + K 
Sbjct: 185 ATMPAEIRRITETFLHNPVKVEVSKPASTAVTVTQFQISTGKESHEKRELLRQLLRDAKD 244

Query: 484 --KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
              A   C        +  R V     SL +H   + A+ HG M    + + ++ F+ G 
Sbjct: 245 LKNAIIFC--------NRKREVAILHKSLQKHGFGAAAL-HGDMDQSARMAALEQFRKGE 295

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             LL+A+ V   G+D+ + S +   +  H     +H++ GR GR   + + I +  P
Sbjct: 296 LPLLVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRI-GRTGRAGRLGTAISIVSP 351


>gi|256847961|ref|ZP_05553405.1| ATP-dependent RNA helicase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715021|gb|EEU29998.1| ATP-dependent RNA helicase [Lactobacillus coleohominis 101-4-CHN]
          Length = 462

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 141/348 (40%), Gaps = 45/348 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAVEAGGQAVIMAP 329
           PT  QE  I ++L+  +       + Q   GSGKT   L+ + +M    E   QAV+ AP
Sbjct: 28  PTPVQERVIPEVLKGENV------VGQSQTGSGKTHAFLLPIFSMMDVNEQRVQAVVTAP 81

Query: 330 IGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
              LA Q Y   K+  +     + +    G   + H+   +E++   Q  ++IGT     
Sbjct: 82  SRELATQTYNAAKQLNKFAPEPLTIHNYVGGTDKEHQ---IEQLKRKQPQLVIGTPGRIL 138

Query: 388 DSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSL 440
           D I    L +      ++DE         L+   +     P  L M        + L   
Sbjct: 139 DLINSGALDIHLATQFVIDEADMTLDMGFLEQVDQIAGHFPEKLQMMVFSATIPVGLRPF 198

Query: 441 GDIDISKITEKPAGRK-PIKTVIIPINRIDEVIERLKVVLSEGKKA--YWICPQIEEKKE 497
               + K  E P   + P +TVI P      V   L       K +  Y +    E    
Sbjct: 199 ----LKKYLENPVVEEIPTETVINP-----NVENWLMSTKGRDKNSLIYELLTMGEPFLA 249

Query: 498 SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F +  ER   ++ + T     +A+IHG +   +++ +M   +N   + ++AT +   G
Sbjct: 250 LVFANTRERATEIYHYLTEQGLKVALIHGGLEPRERKKMMRQVRNLDFQYVVATDLAARG 309

Query: 555 IDVVDASIIIIE----NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ID+   S++I +    + E+F    +H++ GR GRG    + I LY P
Sbjct: 310 IDIEGVSLVINDDIPSDLEYF----IHRV-GRTGRGNLHGTAITLYAP 352


>gi|182437304|ref|YP_001825023.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178465820|dbj|BAG20340.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 521

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 129/318 (40%), Gaps = 33/318 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  +   A+++ P   LAQQ  + +  Y ++ ++ +
Sbjct: 121 RGRTGSGKTLAFGLALLARTAGRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRI 180

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFG 407
             + G M    +  AL     G A +++ T    +D I+       ++ + ++DE     
Sbjct: 181 ATVVGGMSIGRQAGAL----RGGAEVVVATPGRLKDLIERGDCRLDRVTITVLDEAD--- 233

Query: 408 VQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                ++      P V  LL    P  + ++ ++  D ++  +      + P+   + P 
Sbjct: 234 -----QMADMGFMPQVTELLDQVNPDGQRMLFSATLDRNVDLLVRTYL-KDPVVHSVDPA 287

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAI 520
                 +E   V+  +G   Y    +I  +        + +  V++      H     A 
Sbjct: 288 AGAVTTMEH-HVLYVQGADKYATTTEIAARDGRVIMFLDTKHAVDKLTDHLLHSGVRAAA 346

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG  S   +   ++ FK G   +L+AT V   GI V +  +++  +        LH+  
Sbjct: 347 LHGGKSQPQRTRTLERFKTGHVTVLVATNVAARGIHVDNLDLVVNVDPPSDHKDYLHR-G 405

Query: 581 GRVGRGEEISSCILLYHP 598
           GR  R  E  S + L  P
Sbjct: 406 GRTARAGESGSVVTLVLP 423


>gi|166154925|ref|YP_001653180.1| putative helicase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|165930913|emb|CAP06475.1| putative helicase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 1163

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAA--VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL  +IA+  +   + GG ++I+ P  ++     EF K   +   ++V+ 
Sbjct: 721 ILADDMGLGKTLQTIIAVTQSRLEKGGGCSLIICPTSLVYNWKEEFRKFNPEFKTLVVDG 780

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL---VIVDEQHRFGVQQR 411
           I      + RRK L  +   +  + I ++ L Q  I  YK  L   V++DE H   ++ R
Sbjct: 781 IP-----SQRRKQLASLE--EYDVAITSYNLLQKDIDIYKDFLFDYVVLDEAHH--IKNR 831

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL-VLTSLGDI 443
                K+     A H L++T TPI  +L  L SL D 
Sbjct: 832 TTRNAKSVKMIRACHRLILTGTPIENSLEELWSLFDF 868


>gi|152013480|sp|A5E1W4|DBP3_LODEL RecName: Full=ATP-dependent RNA helicase DBP3
          Length = 535

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 127/293 (43%), Gaps = 43/293 (14%)

Query: 300 GDVGSGKTLV----ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            + GSGKT      A+  +  +       + ++P   LA Q Y+ ++  T+ T +    I
Sbjct: 170 AETGSGKTFAFGVPAINNIITSKNKDLSVLCISPTRELALQIYDNLEDLTRGTDVSCVAI 229

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---G 407
            G + +  +   +++I +G A++++ T     D     ++    +  +++DE  R    G
Sbjct: 230 YGGVSKDDQ---IKKIRNG-ANVVVATPGRLVDLINDGAVDLSSINYLVLDEADRMLEKG 285

Query: 408 VQQRLKLTQKATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVI--- 462
            ++ +KL          ++ +TP    +TL+ T+    ++ ++       +P+K  I   
Sbjct: 286 FEEDIKL----------IIGSTPAQGRQTLMFTATWPKEVRELANNFM-NQPVKVTIGDR 334

Query: 463 --IPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------FRSVVERFNSLH 511
             +  N RI +++E L     + KK   +  + +     +        ++    R  SL 
Sbjct: 335 DELSANKRITQIVEVLDDKFQKEKKLINLLQKYQNTGNGDNKILVFALYKKEASRIESLL 394

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                 +A IHG +S   +   + SFK+G C LL+AT V   G+D+ +   +I
Sbjct: 395 HRNKFKVAAIHGDLSQQQRTQALQSFKSGECNLLLATDVAARGLDIPNVKYVI 447


>gi|328872313|gb|EGG20680.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
          Length = 2876

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 4/78 (5%)

Query: 509 SLHEHFTSSIAIIHGR---MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           S H+ +  +  I H     M  ID+  +++ FK G CKLL+AT V+E G+DV + +++I 
Sbjct: 766 SFHKDYNINFLIGHNAGVGMDTIDQHRIIEQFKLGHCKLLVATNVLEEGLDVSECNLVIC 825

Query: 566 ENAEHFGLAQLHQLRGRV 583
             ++ F +  + Q RGR 
Sbjct: 826 FESD-FSMRSMIQRRGRA 842


>gi|255261566|ref|ZP_05340908.1| dead-box ATP-dependent rna helicase 53 [Thalassiobium sp. R2A62]
 gi|255103901|gb|EET46575.1| dead-box ATP-dependent rna helicase 53 [Thalassiobium sp. R2A62]
          Length = 736

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 141/342 (41%), Gaps = 53/342 (15%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQ------ 323
            +P +++ S  + I +DM        ++    GSGKT+   +A+A  + E  G       
Sbjct: 29  LTPVQTEVSKPELIGRDM--------LVSAQTGSGKTVGFGLAIAPVILEEDGNFERAAS 80

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+ +AP   LA Q    ++   +   +IV    G M     R++LER      HI++ 
Sbjct: 81  PLALCIAPTRELAMQVKRELEWLYRPAGVIVTSAVGGMDARQERRSLER----GTHIVVA 136

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPI 431
           T    +D I    L        +L   DE    G ++ L+  L +       LL +AT +
Sbjct: 137 TPGRLRDHIMRGSLDMSAIRSVVLDEADEMLDLGFREDLEYILGEAPEERQTLLFSAT-V 195

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PR +V        ++K  +K    + + TV       D     L+V  ++ + A     +
Sbjct: 196 PRGIV-------GLAKAYQKDDAVR-VSTVAEREQHADIEYRALRVAGNDPENAIINVLR 247

Query: 492 IEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             E   +    N R+VV R  S   +    +  + G ++  ++   + + ++G  ++ +A
Sbjct: 248 YYEAANALVFCNTRAVVNRLTSRFANRGFQVVALSGELTQAERTHALQAMRDGRARVCVA 307

Query: 548 TTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGR 585
           T V   GID+    +++      NAE      LH+  GR GR
Sbjct: 308 TDVAARGIDLPKLELVVHAELPSNAETL----LHR-SGRTGR 344


>gi|166154050|ref|YP_001654168.1| putative helicase [Chlamydia trachomatis 434/Bu]
 gi|301335252|ref|ZP_07223496.1| putative helicase [Chlamydia trachomatis L2tet1]
 gi|165930038|emb|CAP03521.1| putative helicase [Chlamydia trachomatis 434/Bu]
          Length = 1163

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 18/148 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAA--VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL  +IA+  +   + GG ++I+ P  ++     EF K   +   ++V+ 
Sbjct: 721 ILADDMGLGKTLQTIIAVTQSRLEKGGGCSLIICPTSLVYNWKEEFRKFNPEFKTLVVDG 780

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL---VIVDEQHRFGVQQR 411
           I      + RRK L  +   +  + I ++ L Q  I  YK  L   V++DE H   ++ R
Sbjct: 781 IP-----SQRRKQLASLE--EYDVAITSYNLLQKDIDIYKDFLFDYVVLDEAHH--IKNR 831

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL 435
                K+     A H L++T TPI  +L
Sbjct: 832 TTRNAKSVKMIRACHRLILTGTPIENSL 859


>gi|331088262|ref|ZP_08337181.1| hypothetical protein HMPREF1025_00764 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330408506|gb|EGG87972.1| hypothetical protein HMPREF1025_00764 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 739

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 19/206 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T+ Q+ AI    +D     R   +L G  GSGKT V +  + + V+ G QA+++ P I +
Sbjct: 206 TQEQKRAIMRFCKDYENGIRKTYLLHGVTGSGKTEVYMEMIQSVVDKGKQAIVLIPEIAL 265

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F +++       V ++   +    R   + R   G+  ++IG   ALF     
Sbjct: 266 TYQTVMRFYRRFKDR----VSVMNSRLSAGERYDQMMRAKAGEVDVMIGPRSALF---TP 318

Query: 392 YYKLILVIVDEQHR--FGVQQRLKLTQKATA--------PHVLLMTATPIPRTLVLTSLG 441
           +  L L+++DE+H   +  +Q  +   + TA          V+L +ATP    +     G
Sbjct: 319 FPNLGLIVIDEEHEPTYKSEQTPRYHARETALRRAQTEGASVVLGSATPSMEAMYRAKNG 378

Query: 442 DIDISKITEKPAGRKPIKTVIIPINR 467
           +  + ++  +   + P +   + + +
Sbjct: 379 EYVLMEMKNRSKMQDPAEVYTVDMRK 404


>gi|326795505|ref|YP_004313325.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546269|gb|ADZ91489.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 443

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 140/329 (42%), Gaps = 52/329 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAA-----AVEAG-----GQAVIMAPIGILAQQHYEFIKKYTQ 346
           I Q   G+GKT   L+AM +      VE        + +I+AP   LA Q  +  +K TQ
Sbjct: 102 IGQAQTGTGKTAAFLLAMVSDFLDYPVEEERARNMARGLIIAPTRELALQIADEAEKITQ 161

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVD 401
           N  + V  + G M    +++ALE     +  I++ T     D  +  K +L     +++D
Sbjct: 162 NCSLNVISLVGGMSYEKQKRALE---TERVDILVATPGRLLDFARSKKAMLNKVEVLVLD 218

Query: 402 EQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           E  R         V+  +++T        +L +AT  P+          DI  +  +   
Sbjct: 219 EADRMLSMGFIPDVKSIIRMTPHKERRQTMLFSAT-FPK----------DIQNLARQWT- 266

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFN 508
             P +  ++P    ++ I+++   +   +K   +   IE+         +N R       
Sbjct: 267 YFPKEVSVVPKEATNKNIDQVIYTVEADQKWPVLKSLIEDDGNQRTIIFANRRDETRELY 326

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII--- 565
            L +    + AI+ G +S   +   + +FK+G  ++L+AT V   GI V +  +++    
Sbjct: 327 ELLKEAKINCAILSGEVSQDKRVKTLKNFKDGRIQVLVATDVAGRGIHVDNIELVVNYTL 386

Query: 566 -ENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            E+ E +    +H++ GR GRG E+   +
Sbjct: 387 PEDPEDY----VHRI-GRTGRGGEMGKSV 410


>gi|149186080|ref|ZP_01864394.1| primosome assembly protein PriA [Erythrobacter sp. SD-21]
 gi|148830111|gb|EDL48548.1| primosome assembly protein PriA [Erythrobacter sp. SD-21]
          Length = 725

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 27/203 (13%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDI 284
           +RLA  E L G+ A +   ++     G+   V  G + Q +L  +     +  E+A  D 
Sbjct: 132 QRLAAMEALEGEQATI---RELSGIAGVSEGVLRGLVNQGVLEPVEVDCDRPYEAARPDF 188

Query: 285 LQ-DMSQKNRMLR---------------ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            Q ++S++ R +                +L G  GSGKT      +A A+  G Q +++ 
Sbjct: 189 AQVELSEQQREVSDIFSAAVREAKFAPFLLDGVTGSGKTETYFEPVAEALRMGRQVLVLL 248

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
           P   L +    F+ ++ +       +   ++    RR+A   +A G A +++G   ALF 
Sbjct: 249 PEIALTEN---FLHRFEERFGASPVLWHSSLKSTERRRAWRAVASGSAQVVVGARSALF- 304

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
             + + KL L++VDE H    +Q
Sbjct: 305 --LPFAKLGLIVVDEAHETSFKQ 325


>gi|52549818|gb|AAU83667.1| DNA helicase [uncultured archaeon GZfos32E7]
          Length = 781

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 148/350 (42%), Gaps = 64/350 (18%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           QE  I ++L   +QKN  L IL    G GK++   I    A+   G  V+++P+  L + 
Sbjct: 28  QEEIISNVL---AQKN-TLAILP--TGVGKSICFQIP---ALIFDGLTVVVSPLIALMKD 78

Query: 337 HYEFIKKYTQNTQIIVEI--ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS----- 389
             + +KK+      I E   I   + QA + +  + +   +  ++      F D+     
Sbjct: 79  QVDNLKKHG-----IFEAAYINSMLDQATKERIHKLLKESKLKMLYVAPETFVDNKLMSI 133

Query: 390 IQYYKLILVIVDEQHRFGVQ-----------QRLKLTQKATAPHVLLMTATPIPRTL--- 435
           ++   + L+ +DE H   V            QR+        P VL +TAT   RT+   
Sbjct: 134 LKTCNISLIAIDEVHCISVWGHNFRPDYLRLQRVIADLHNPPPPVLGLTATAT-RTVEED 192

Query: 436 VLTSLG-DIDISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQ 491
           +   LG + D+ K       RK +   +IP+   NR +  ++RL   L      Y     
Sbjct: 193 IQKQLGIECDVFK---DSFDRKNLLFSVIPMKNNNRKELSLKRLLGQLKGSTIVY----- 244

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID-KESVMDSFKNGTCKLLIATTV 550
                  NF    E   +       S +  HG++ D + ++ + + F NG  ++++AT  
Sbjct: 245 ------VNFTKTAEWLATYLADSGLSASYYHGQIRDSEERKRIQNDFINGRTRIVVATNA 298

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLY 596
             +GID  D   II     H+ L +     +Q  GR GR + IS+CILLY
Sbjct: 299 FGMGIDKEDIRAII-----HYNLPKSIENYYQEVGRAGRDQNISNCILLY 343


>gi|86147794|ref|ZP_01066101.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
 gi|85834432|gb|EAQ52583.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
          Length = 412

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 145/345 (42%), Gaps = 48/345 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT+ Q++ I  I+ +      +L + Q   GSGKTL   + +  +++      QA+I+ P
Sbjct: 23  PTEIQQAVIPTIIAEKD----VLALAQ--TGSGKTLAFGLPLLNSIKHDVNELQAIIIVP 76

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMP-QAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q  + ++       I    +TG +  +  +++ LE+       ++I T      
Sbjct: 77  TRELASQVAKALEPIATTLDIKTVTLTGGVDIEIQQQQLLEK-----PQLVIATPGRLHA 131

Query: 389 SIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            IQ  KL L     +I+DE  R         VQ  +    K    H  L+ +  +P+ L+
Sbjct: 132 VIQENKLELTQCKSLILDEADRLLDMGFWPDVQTIISALPKK---HQTLLFSATLPKELI 188

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
             +   +             P+K      N +   IE    ++++G KA  +   + +  
Sbjct: 189 SQTEALL-----------VNPVKVTTHQENSVVAAIEETLYLVNKGSKAQALIALLNQHA 237

Query: 497 ESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            S    F    +  ++L +  +    S+  +HG  S  ++E  ++SFKNG  ++LIAT V
Sbjct: 238 WSQVLVFIGAKDNADALTKRLSKAKISVNALHGNKSQEEREQALESFKNGKTRVLIATDV 297

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +  GI +    ++I  +        +H++ GR  R     S I L
Sbjct: 298 MARGIHIDQLPVVINFDLPSHSATYVHRV-GRTARAGSTGSAISL 341


>gi|295692937|ref|YP_003601547.1| ATP-dependent DNA helicase recq [Lactobacillus crispatus ST1]
 gi|295031043|emb|CBL50522.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus ST1]
          Length = 589

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 121/326 (37%), Gaps = 59/326 (18%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G GK++   I   A + +G   VI   I ++  Q    I    QN  I    +    PQ
Sbjct: 39  TGGGKSICYQIP--ALINSGVTLVISPLISLMKDQ----IDNLKQNG-INAAALNSTTPQ 91

Query: 362 AHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQH---------RFG 407
                 L +   G+  +I  T        F+  + +  + LV VDE H         R  
Sbjct: 92  EEVNPILRQAYEGKIKLIYITPERLAIDYFRYQLNFLDIDLVAVDEAHCISQWGHDFRPA 151

Query: 408 VQQRLK-LTQKATAPHVLLMTATPIP--------------RTLVLTSLGDIDISKITEKP 452
            +Q L  +    + P++L +TAT  P                +++TS    +IS      
Sbjct: 152 YRQLLDGINSLKSRPNILALTATATPAVQDDICEQLNIPKENMIVTSFARPNIS------ 205

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
                 K V  P N    + E +K    +    Y           +N R  VE       
Sbjct: 206 -----FKVVNSPQNTPLYISEYIKAHQDKAGIIY-----------TNTRKKVESLTDYLA 249

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               S+   HG M   ++  V ++F+    ++++AT    +GID  +   +I  ++    
Sbjct: 250 KKGISVGAYHGGMDSSERSQVQEAFQFDEFQVIVATNAFGMGIDKSNVRFVIHASSAR-N 308

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
           +   +Q  GR GR  E S  IL+YHP
Sbjct: 309 MESYYQEAGRAGRDGEESEAILIYHP 334


>gi|237815476|ref|ZP_04594474.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A]
 gi|237790313|gb|EEP64523.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A]
          Length = 545

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 176 RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 231

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 232 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 283

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 284 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 331

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 332 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 391

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 392 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 450


>gi|237713858|ref|ZP_04544339.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409233|ref|ZP_06085777.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645798|ref|ZP_06723482.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CC 2a]
 gi|294809471|ref|ZP_06768175.1| ATP-dependent RNA helicase RhlE [Bacteroides xylanisolvens SD CC
           1b]
 gi|229446014|gb|EEO51805.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352980|gb|EEZ02076.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638877|gb|EFF57211.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CC 2a]
 gi|294443343|gb|EFG12106.1| ATP-dependent RNA helicase RhlE [Bacteroides xylanisolvens SD CC
           1b]
          Length = 374

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 146/347 (42%), Gaps = 51/347 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM--------AAAVEAGGQA 324
           PT  QE AI   L     K  +L   Q   G+GKT    I +         AA   G +A
Sbjct: 24  PTPIQEKAIPPALA----KRDILGCAQ--TGTGKTASFAIPIIQHLQLDKEAARRQGIKA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR----RKALERIAH--GQAHI 378
           +I+ P   LA Q  E I  Y+++T+I   +I G + Q  +    RK ++ +    G+   
Sbjct: 78  LILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDLLRKGIDILVATPGRLLD 137

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPR 433
           ++    +  D+IQY+     ++DE  R    G    +K  L +       L  +AT +P 
Sbjct: 138 LMSQGHIHLDTIQYF-----VLDEADRMLDMGFIHDIKRILPKLPKEKQTLFFSAT-MPD 191

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +++  +           K   + P+K  I P +   + I++L V   E K+   +   I 
Sbjct: 192 SIISLT-----------KSLLKNPVKIYITPKSSTVDSIKQL-VYFVEKKEKSQLLISIL 239

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIA-------IIHGRMSDIDKESVMDSFKNGTCKLLI 546
            K E     +  R     +     +         IHG  S   ++S + +FK+G  ++++
Sbjct: 240 SKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           AT +   GID+ +  ++I  +        +H++ GR GR   + + +
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRI-GRTGRAGNMGTAL 345


>gi|153815689|ref|ZP_01968357.1| hypothetical protein RUMTOR_01925 [Ruminococcus torques ATCC 27756]
 gi|145846930|gb|EDK23848.1| hypothetical protein RUMTOR_01925 [Ruminococcus torques ATCC 27756]
          Length = 706

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 19/206 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T+ Q+ AI    +D     R   +L G  GSGKT V +  + + V+ G QA+++ P I +
Sbjct: 173 TQEQKRAIMRFCKDYENGIRKTYLLHGVTGSGKTEVYMEMIQSVVDKGKQAIVLIPEIAL 232

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F +++       V ++   +    R   + R   G+  ++IG   ALF     
Sbjct: 233 TYQTVMRFYRRFKDR----VSVMNSRLSAGERYDQMMRAKAGEVDVMIGPRSALF---TP 285

Query: 392 YYKLILVIVDEQHR--FGVQQRLKLTQKATA--------PHVLLMTATPIPRTLVLTSLG 441
           +  L L+++DE+H   +  +Q  +   + TA          V+L +ATP    +     G
Sbjct: 286 FPNLGLIVIDEEHEPTYKSEQTPRYHARETALRRAQTEGASVVLGSATPSMEAMYRAKNG 345

Query: 442 DIDISKITEKPAGRKPIKTVIIPINR 467
           +  + ++  +   + P +   + + +
Sbjct: 346 EYVLMEMKNRSKMQDPAEVYTVDMRK 371


>gi|84684523|ref|ZP_01012424.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84667502|gb|EAQ13971.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 719

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 151/367 (41%), Gaps = 55/367 (14%)

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAP 329
           + +++ + D     R L ++    GSGKT+   +A+A  +    +         A+++AP
Sbjct: 38  TPVQEAVSDPDLAGRDL-LVSAQTGSGKTVGFGLAIAPTLLGEDEEFGPAGLPLALVVAP 96

Query: 330 IGILAQQ-HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q   E I  + +    +   + G M     R+ALER     AHI++GT    +D
Sbjct: 97  TRELAMQVKRELIWLFGKTGARLASCV-GGMDMRDERRALER----GAHIVVGTPGRLRD 151

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
            IQ   L        +L   DE    G ++ L+  L +      +LL +AT +P T    
Sbjct: 152 HIQRGSLDMSELRAIVLDEADEMLDLGFREDLEFMLEEAPEERRILLFSAT-VPPT---- 206

Query: 439 SLGDIDISKITEK---PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
                 I+K+ E+    A R  + T+       D   + ++V  ++ + A +   +  + 
Sbjct: 207 ------IAKLAEQYQNDAAR--VNTITGATQHADIAYQAIRVAQTDTENAIFNLLRFHDS 258

Query: 496 KES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           + +    N R+ V    +   +   ++  + G +S  ++   + + ++G  ++ +AT V 
Sbjct: 259 ENAIVFANTRAQVAHLTARLSNRGLNVVSLSGELSQNERTHALQAMRDGRAQVCVATDVA 318

Query: 552 EVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
             GID+ +  ++I     H  L +    L    GR GR        L+  P   K +   
Sbjct: 319 ARGIDLPNLDLVI-----HADLPKNTESLTHRSGRTGRAGRKGISALIVPPRDVKKTERL 373

Query: 608 LSVLKNT 614
           L   K T
Sbjct: 374 LGWAKTT 380


>gi|82915542|ref|XP_729118.1| ATP-dependent helicase Ddx1 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485997|gb|EAA20683.1| ATP-dependent helicase ddx1 [Plasmodium yoelii yoelii]
          Length = 830

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 13/103 (12%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S  I+ G+MS+ ++++ +D+FK G  + LI T V   GID+ +   +II        A  
Sbjct: 618 SCVILKGKMSNDERKNNLDAFKKGEVRFLICTDVAARGIDIQNLRYLIIMTLSDNYSAFF 677

Query: 577 HQLRGRVGRGEEISSCILL----------YH--PPLSKNSYTR 607
           H++ GRVGR  + S CI+L          YH  P    N Y R
Sbjct: 678 HKV-GRVGRDGKNSLCIVLSSENEEEKVWYHSCPTRGVNCYNR 719


>gi|326389016|ref|ZP_08210598.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206616|gb|EGD57451.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 601

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 158/365 (43%), Gaps = 45/365 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--EAGG-----QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           ++    GSGKT+   +AMAA +  E  G      A+++AP   LA Q    +        
Sbjct: 54  LVSAQTGSGKTVAFGVAMAARLLSEDNGFNRAPGALVIAPTRELALQVSRELTWLFGKAG 113

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           I +    G M  A  R+ L   A G  H+++GT    +D ++   L L     V++DE  
Sbjct: 114 IRITTCVGGMDAARERRTL---AQG-THVVVGTPGRLRDHLERGALDLSALHHVVLDEAD 169

Query: 405 RF---GVQQRLKLTQKAT--APHVLLMTATPIPRTLVLTSL----GDIDISKITEKPAGR 455
                G ++ L+   +AT      LL +AT +P+ +V  +       + IS +++   G 
Sbjct: 170 EMLDMGFREDLEEILEATPEGRRTLLFSAT-MPKPIVALARRYQRDALRISTVSDN-VGH 227

Query: 456 KPI---KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             I      + P +  + VI  L+    E + A   C         N R +    +SL E
Sbjct: 228 GDITYQAVAVSPADIENAVINLLR--FHEAETAILFC-----ATRDNVRHL---HSSLIE 277

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +++A+  G  S  ++ + + + ++G  ++ +AT V   GID+   S++I  + E   
Sbjct: 278 RGFAAVAL-SGEHSQNERNNALQALRDGRARICVATDVAARGIDIPSLSLVI--HVEVPR 334

Query: 573 LAQLHQLR-GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI-AEEDLKQRKE 630
            A++ Q R GR GR       +++   P  +     L + + T +   + + E +++R  
Sbjct: 335 DAEVLQHRSGRTGRAGRKGVAVMIVPYPRRRRVEGMLRIARVTAEWVPVPSPESIRERDR 394

Query: 631 GEILG 635
             +L 
Sbjct: 395 ERLLA 399


>gi|154490238|ref|ZP_02030499.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
           43184]
 gi|154089130|gb|EDN88174.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
           43184]
          Length = 427

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 126/315 (40%), Gaps = 53/315 (16%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            G+GKT   ++ +   +  G        A+IMAP   LAQQ  + I+ +T    +    +
Sbjct: 47  TGTGKTAAYVLPVINELSKGLHPANAINAIIMAPTRELAQQIDQQIEGFTYFVPVSAVAV 106

Query: 356 TGN---MPQAHRRKALERIAH------GQ--AHIIIGTHALFQDSIQYYKLILVIVDEQH 404
            G    +    +++ +E  A       G+  +HI +GT  L Q S         ++DE  
Sbjct: 107 YGGTDGIAWEQQKRGMEMGADIVIATPGRLLSHIKLGTVDLSQVS-------FFVLDEAD 159

Query: 405 RF-------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           R         + Q  KL        +   T  P  RTL  T L               K 
Sbjct: 160 RMLDMGFYDDIMQVYKLLPATCQTIMFSATMPPKIRTLAQTIL---------------KN 204

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLH 511
            + V I I+R  E I +   V  + +K   +     + +       S+ +  V+   S  
Sbjct: 205 PEEVKIAISRPPETIMQTAYVCYDMQKLRILEDLFSKSRPQRVIIFSSSKMKVKELASTL 264

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +    ++A +H  +    +E VM  FKNG   +L+AT V+  GID+ D  ++I  +  H 
Sbjct: 265 KRMKFNVAAMHSDLEQSQREEVMKEFKNGRIDILVATDVVSRGIDINDIKLVINFDIPHD 324

Query: 572 GLAQLHQLRGRVGRG 586
               +H++ GR  RG
Sbjct: 325 PEDYVHRI-GRTARG 338


>gi|149239594|ref|XP_001525673.1| hypothetical protein LELG_03601 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451166|gb|EDK45422.1| hypothetical protein LELG_03601 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 461

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 127/293 (43%), Gaps = 43/293 (14%)

Query: 300 GDVGSGKTLV----ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            + GSGKT      A+  +  +       + ++P   LA Q Y+ ++  T+ T +    I
Sbjct: 170 AETGSGKTFAFGVPAINNIITSKNKDLSVLCISPTRELALQIYDNLEDLTRGTDVSCVAI 229

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---G 407
            G + +  +   +++I +G A++++ T     D     ++    +  +++DE  R    G
Sbjct: 230 YGGVSKDDQ---IKKIRNG-ANVVVATPGRLVDLINDGAVDLSSINYLVLDEADRMLEKG 285

Query: 408 VQQRLKLTQKATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVI--- 462
            ++ +KL          ++ +TP    +TL+ T+    ++ ++      + P+K  I   
Sbjct: 286 FEEDIKL----------IIGSTPAQGRQTLMFTATWPKEVRELANNFMNQ-PVKVTIGDR 334

Query: 463 --IPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------FRSVVERFNSLH 511
             +  N RI +++E L     + KK   +  + +     +        ++    R  SL 
Sbjct: 335 DELSANKRITQIVEVLDDKFQKEKKLINLLQKYQNTGNGDNKILVFALYKKEASRIESLL 394

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                 +A IHG +S   +   + SFK+G C LL+AT V   G+D+ +   +I
Sbjct: 395 HRNKFKVAAIHGDLSQQQRTQALQSFKSGECNLLLATDVAARGLDIPNVKYVI 447


>gi|117921047|ref|YP_870239.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613379|gb|ABK48833.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 449

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 141/366 (38%), Gaps = 75/366 (20%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL-------IAMAAAVEAGGQA 324
           +PT  QE A+   L   + K+ M        GSGKTL  L       I+  A  +   + 
Sbjct: 23  TPTAIQEQALPIAL---AGKDLMA---SSKTGSGKTLAFLLPAMQRVISTRALTKRDPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q Y  ++    NTQ     + G      + KAL +    + H I+ T  
Sbjct: 77  LILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAK----EPHFIVATPG 132

Query: 385 LFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLTQKATAPH----VLLMTATPIP 432
              D ++   L L     +++DE  R    G   +LK    A A H     L+ +AT   
Sbjct: 133 RIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAIN-AAADHKRRQTLMFSAT--- 188

Query: 433 RTLVLTSLGDIDISKITEKPAG--RKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWIC 489
                     +D S+I E  A   + P    I   +    ++ +R+           ++C
Sbjct: 189 ----------LDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRI-----------YLC 227

Query: 490 PQIEEKKE-----------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
             ++ K+                  +  R+  ER  S       + A + G +    +  
Sbjct: 228 DHLDHKEALLTRLLSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQ 287

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +MD F  G  ++L+ T V   G+D+++ S++I  +   F    +H++ GR GR       
Sbjct: 288 IMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDA 346

Query: 593 ILLYHP 598
           I L  P
Sbjct: 347 ISLVGP 352


>gi|194226836|ref|XP_001916530.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Equus
           caballus]
          Length = 791

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 140/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 273 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 330

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 331 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 386

Query: 401 DEQHRF---GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G + +++            L   AT P  +   A    R     ++G++++
Sbjct: 387 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 446

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 447 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 488

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 489 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 548

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 549 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 600


>gi|226944026|ref|YP_002799099.1| ATP-dependent DEAD/DEAH box helicase [Azotobacter vinelandii DJ]
 gi|226718953|gb|ACO78124.1| ATP-dependent DEAD/DEAH box helicase [Azotobacter vinelandii DJ]
          Length = 439

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 167/402 (41%), Gaps = 82/402 (20%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ------AVI 326
           PT  Q +AI   L+        LR++    GSGKT   ++ +   +    +      A+I
Sbjct: 23  PTPVQAAAIPPALEGHD-----LRVI-ARTGSGKTAAFVLPLLNGLIGDARPRVSIRALI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + +++++Q T I   ++TG      +   L ++      I+IGT    
Sbjct: 77  LLPTRELAQQTLKEVERFSQFTFIKSGLVTGGENFKVQAALLRKVPD----ILIGTPGRL 132

Query: 387 QDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPI----- 431
            + +    L L     +++DE  R     F    +  +   A     LL +AT       
Sbjct: 133 LEHLNAGHLDLRDVEVLVLDEADRMLDMGFAEDVQRLVESCANRRQTLLFSATTGGSGLR 192

Query: 432 ---------PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
                    PR L+L ++G++  S+ T     R+ I T   P ++     ERL       
Sbjct: 193 EMVAKVLREPRHLMLNAVGEL--SETT-----RQQIVTADDPAHK-----ERL------- 233

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKN 539
              +W+      +K   F +   + + L+ H  ++     ++HG     D++  ++  + 
Sbjct: 234 --VHWLLENETYRKAIVFTNTRAQADRLYGHLVAAGHKAFVLHGEKDQKDRKLAIERLRQ 291

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHP 598
           G  ++L+AT V   G+DV    ++I  +    G   +H++ GR GR G E  +  L+ H 
Sbjct: 292 GGARVLVATDVAARGLDVDGLDLVINFDMPRSGDEYVHRV-GRTGRAGAEGLAVSLICH- 349

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQS 639
               N +  +S +          E  LKQR E  ++ G+K S
Sbjct: 350 ----NDWNLMSSV----------ERYLKQRFERRVIKGLKGS 377


>gi|325284979|ref|YP_004260769.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324320433|gb|ADY27898.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 429

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 144/342 (42%), Gaps = 42/342 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGG-QA 324
           +P+  QE AI  +L+          +     G+GKT      L+ L++   A+     +A
Sbjct: 23  TPSPIQEKAIPPVLEGKDV------LASAQTGTGKTAGFTLPLLHLLSEQKALRHRPVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q +  +K+Y++   +   +I G + Q  +   L+R       +++ T  
Sbjct: 77  LILTPTRELAAQIFANVKEYSEFLDLRSAVIFGGVNQKPQIANLKR----GMDVLVATPG 132

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLT 438
              D      +   K+ + ++DE  R      L+  ++       +M   P  R  L+ +
Sbjct: 133 RLLDLHNQRFLSLDKVEIFVLDEADRMLDMGFLRDIER-------VMKLIPAKRQNLMFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    DI K+        PI+    P N   EVI++    +++GKK   I   I +    
Sbjct: 186 ATFSKDIKKLAHGIL-NNPIQVEATPENTAVEVIKQKVYRVAKGKKTGLIIKLISDGNWQ 244

Query: 499 N---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F       N+L +  +S   S A IHG  S   +   +D FK GT ++L+AT +  
Sbjct: 245 QVLVFTRTKHGANNLCKKMSSKGISAAAIHGNKSQGARTKALDGFKKGTLRVLVATDIAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
            G+D+     +I     +     +H++ GR GR    GE +S
Sbjct: 305 RGLDIPLLPHVINYEIPNISEDYVHRI-GRTGRAGASGEAVS 345


>gi|319780911|ref|YP_004140387.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317166799|gb|ADV10337.1| primosomal protein N' [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 727

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 23/165 (13%)

Query: 257 VEGKIAQKILRN--IPFSPTKSQES---AIKDILQDMSQKNRMLR-----------ILQG 300
           ++G  AQ +     IP  P  +      AI +++ D     +MLR           +L G
Sbjct: 162 IDGLRAQGVFETVMIPPRPVVAAPDPGYAIPELMPDQGAAAQMLRANVAAGVFNVALLDG 221

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
             GSGKT V   A+AAA++ G Q +I+ P   L    + F++++ Q           ++P
Sbjct: 222 VTGSGKTEVYFEAVAAALDQGRQVLILLPEIALT---HAFLERFQQRFGAKPGEWHSDLP 278

Query: 361 QAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH 404
              R +   ++A G   ++ G   ALF   + + +L L++VDE+H
Sbjct: 279 PRMRERVWRQVAEGGVRVVAGARSALF---LPFKELGLIVVDEEH 320


>gi|326777924|ref|ZP_08237189.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658257|gb|EGE43103.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 521

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 129/318 (40%), Gaps = 33/318 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  +   A+++ P   LAQQ  + +  Y ++ ++ +
Sbjct: 121 RGRTGSGKTLAFGLALLARTAGRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRI 180

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFG 407
             + G M    +  AL     G A +++ T    +D I+       ++ + ++DE     
Sbjct: 181 ATVVGGMSIGRQAGAL----RGGAEVVVATPGRLKDLIERGDCRLDRVTITVLDEAD--- 233

Query: 408 VQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                ++      P V  LL    P  + ++ ++  D ++  +      + P+   + P 
Sbjct: 234 -----QMADMGFMPQVTELLDQVNPDGQRMLFSATLDRNVDLLVRTYL-KDPVVHSVDPA 287

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAI 520
                 +E   V+  +G   Y    +I  +        + +  V++      H     A 
Sbjct: 288 AGAVTTMEH-HVLYVQGADKYATTTEIAARDGRVIMFLDTKHAVDKLTDHLLHSGVRAAA 346

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG  S   +   ++ FK G   +L+AT V   GI V +  +++  +        LH+  
Sbjct: 347 LHGGKSQPQRTRTLERFKTGHVTVLVATNVAARGIHVDNLDLVVNVDPPSDHKDYLHR-G 405

Query: 581 GRVGRGEEISSCILLYHP 598
           GR  R  E  S + L  P
Sbjct: 406 GRTARAGESGSVVTLVLP 423


>gi|196040612|ref|ZP_03107911.1| dead/deah box helicase domain protein [Bacillus cereus NVH0597-99]
 gi|196028402|gb|EDX67010.1| dead/deah box helicase domain protein [Bacillus cereus NVH0597-99]
          Length = 712

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 149/331 (45%), Gaps = 40/331 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQA----VIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           I+     SGKT  A + + + +E G +     + ++P+  L    +E I+K  +++ I +
Sbjct: 43  IVSSGTASGKTEAAFLPILSLIEEGAETQLKVLYISPLKALINNQFERIEKLCEHSHIPI 102

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK-----LILVIVDEQHRF- 406
               G++ Q+ + K ++              +LF +  ++ +     L  +++DE H F 
Sbjct: 103 HKWHGDVSQSRKNKFIKNPGGILQITPESVESLFINRTEHIRHLFKGLEFIVIDEIHSFI 162

Query: 407 ----GVQQRLKLTQ----KATAPHVLLMTATPIPRTLV--LTSLGDIDISKITEKPAGRK 456
               GVQ R  +++        P ++ ++AT     LV    +  D D  +I +     K
Sbjct: 163 DTERGVQLRSLMSRIEQYTEQRPRIIGLSATIDNFNLVKQWVNYKDSDNVEIIKVKGNSK 222

Query: 457 PIKTVII----------PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-FRSVVE 505
            +   ++          P+   +++ E     L++ +KA   C    E +E+  F + + 
Sbjct: 223 ELLYYLMHFQTEEDRKKPVELFEDIRE-----LTKNQKAIIFCNSRGEVEEATVFLNRLA 277

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             + + E + +  + I  +  +  ++ +++S      K +IAT+ +E+GID+ D  I+I 
Sbjct: 278 ERDGMGETYYAHHSSIDKKEREYVEKKMIES---NIPKSIIATSSLELGIDIGDVDIVIQ 334

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            ++  F ++ L Q  GR GR ++ +  + LY
Sbjct: 335 IDST-FTVSSLKQRLGRSGRKKDANQMLQLY 364


>gi|254176272|ref|ZP_04882930.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei ATCC 10399]
 gi|160697314|gb|EDP87284.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei ATCC 10399]
          Length = 476

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 136/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + I++  +  + + V
Sbjct: 60  IAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKV 119

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHII+GT     D +    L L     +++DE  R  
Sbjct: 120 LTLCGGTPMRPQTQSLE---HG-AHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRML 175

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K      +     P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 176 DMGFFDDIAK------VARQCPPTRQTLLFSATYPDGIAKLSQQFL-RHP-KRVKLEERH 227

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 228 DDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 287

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 288 -HGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVYVHRI- 345

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 346 GRTGRADQ 353


>gi|153852869|ref|ZP_01994306.1| hypothetical protein DORLON_00288 [Dorea longicatena DSM 13814]
 gi|149754511|gb|EDM64442.1| hypothetical protein DORLON_00288 [Dorea longicatena DSM 13814]
          Length = 624

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S+   H  +SD +++   ++F  G  ++++AT    +GID  D   +I  N     +   
Sbjct: 264 SVTRYHAGLSDEERKENQENFIYGKRQIMVATNAFGMGIDKPDVRFVIHYNMPK-NMESY 322

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           +Q  GR GR  E S CIL Y P   ++  T    ++N E+   + EE  K  KE ++  +
Sbjct: 323 YQEAGRAGRDGEPSECILYYEP---RDVRTNRLFIENGEENSELDEETRKIVKERDLERL 379

Query: 637 KQ 638
           KQ
Sbjct: 380 KQ 381


>gi|145506703|ref|XP_001439312.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406496|emb|CAK71915.1| unnamed protein product [Paramecium tetraurelia]
          Length = 493

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 148/351 (42%), Gaps = 57/351 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT----LVALIAMAAAVEAGGQAVIMA 328
           PT  Q  AI  ILQ    K  ++ I     GSGKT    L  L  +    E G + ++ A
Sbjct: 120 PTPIQMVAIPIILQ----KKNLIAI--APTGSGKTCAFALPTLHNLENHKEGGPRCLVFA 173

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q Y+   K+ +  +I        + + +R K   + A     I+I +   F  
Sbjct: 174 PAQELADQLYKEFNKFNKELKI------KQIQEMNREKQAFKQAWNHIDILISSPLKF-- 225

Query: 389 SIQYYKLI------LVIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            ++ +K++       VI+DE  ++        V+Q L++ +     ++      P P   
Sbjct: 226 -LKLHKVVDLSTVEYVIMDEADKYFELGLLAQVKQLLRILESLQITYMFFSATLPEPVED 284

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV----------IERLKVVLSEGKKA 485
           +   L  ID  KI     GR  +      ++RID+           I+ +K +++EG+  
Sbjct: 285 IYRELL-IDPIKIM--IGGRNHV------LSRIDQQLRYVSNEYGKIQEIKNLINEGQ-- 333

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             + P +    +S  R+    +  + +     +  IHG M    ++ +++ F  GT  +L
Sbjct: 334 --MTPPVLVFVQSKTRAEALMY-EIEQLKVIRVNCIHGDMESKTRQEIVEQFHKGTIWML 390

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           I T ++  GID  D  ++I  +     +  +H++ GR GR  +    I L+
Sbjct: 391 ICTDMMARGIDFKDVQLVINYDFPQSMITYVHRV-GRTGRAGKQGKAITLF 440


>gi|332525438|ref|ZP_08401597.1| ATP-dependent RNA helicase DbpA [Rubrivivax benzoatilyticus JA2]
 gi|332108706|gb|EGJ09930.1| ATP-dependent RNA helicase DbpA [Rubrivivax benzoatilyticus JA2]
          Length = 473

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 145/347 (41%), Gaps = 65/347 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I Q   GSGKT    + + A ++A     QA+++ P   LA+Q  + I++  +    + V
Sbjct: 52  IAQAKTGSGKTAAFSLPLLARLDAKRFATQALVLCPTRELAEQVSQEIRRLARAEDNVKV 111

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G    A  R  L  + HG AH+++GT     D ++   L L      ++DE  R  
Sbjct: 112 LTLCGG---AAIRPQLASLEHG-AHVVVGTPGRVLDHLERGSLALEALTTFVLDEADRML 167

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             G  + +    +   P        P  R TL+ ++    D++K+  +   R P +  + 
Sbjct: 168 DMGFAEDIAAVARHCPP--------PSKRQTLLFSATYPDDVAKLAARYL-RDPQEVRLA 218

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEE-KKESNFRSVVERFNSLHEHFTSSIAII- 521
             +   +++ER   V +E ++ + +   ++  + ES        F +  +     +A++ 
Sbjct: 219 ETHAASQIVERFYEV-TESQRLHAVGLLLQRFRPESTLA-----FCNTKQQCRDLVAVLQ 272

Query: 522 ---------HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII------- 565
                    HG +   D++ V+  F + +  +L+AT V   G+D+     +I        
Sbjct: 273 AQGIVALELHGDLEQRDRDQVLVRFAHRSASVLVATDVAARGLDISKLEAVINVDITPEP 332

Query: 566 --------------ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                         E+   F LA L ++ GRVGR +E+     ++HP
Sbjct: 333 EVHTHRIGRTGRAGESGLVFNLASLDEM-GRVGRIDEMQGRQSVWHP 378


>gi|330930035|ref|XP_003302864.1| hypothetical protein PTT_14848 [Pyrenophora teres f. teres 0-1]
 gi|311321492|gb|EFQ89040.1| hypothetical protein PTT_14848 [Pyrenophora teres f. teres 0-1]
          Length = 601

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 139/339 (41%), Gaps = 38/339 (11%)

Query: 300 GDVGSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            + GSGKTL   +     + A       G +AVI++P   LA Q Y+ +        + V
Sbjct: 231 AETGSGKTLAFGVPCVRYISALPQDKRKGIKAVIVSPTRELAVQIYDQLVALATPAGLSV 290

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF- 406
             + G +P+  +  A  +     AHI++ T     D     S    K   V++DE  R  
Sbjct: 291 VCVYGGVPKDPQVAACRK-----AHIVVATPGRLNDLIGEGSADLSKAEYVVLDEADRML 345

Query: 407 --GVQQRLK--LTQKATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGR----- 455
             G ++ ++  ++Q       L+ TAT  P  R L  T +       I +  +G      
Sbjct: 346 DKGFEEAIRQIISQTPKKRQTLMFTATWPPSVRDLASTFMNSPVKITIGDNQSGELRANV 405

Query: 456 --KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             K +  V+ P ++   +++ LK   S   K   I      KKE+     +E F  +   
Sbjct: 406 RIKQVVEVVDPRDKEQRLLQLLKQYQSGKNKDDRILVFCLYKKEA---VRIENFIRMKGF 462

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +  IHG +S   + + + +FK G   LL+AT V   G+D+    ++I         
Sbjct: 463 ---RVGGIHGDLSQEKRSASLAAFKEGHVPLLVATDVAARGLDIPAVKVVINVTFPLTAE 519

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             +H++ GR GR  +    I L+       S + ++VLK
Sbjct: 520 DYVHRI-GRTGRAGKEGLAITLFTDHDKSLSGSLINVLK 557


>gi|294852360|ref|ZP_06793033.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026]
 gi|294820949|gb|EFG37948.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026]
          Length = 488

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 162 RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 217

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 218 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 269

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 270 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 317

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 318 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 377

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 378 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|289621395|emb|CBI52178.1| unnamed protein product [Sordaria macrospora]
          Length = 372

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 132/299 (44%), Gaps = 58/299 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +        I   
Sbjct: 40  IAQAQSGTGKTATFSISVLQKIDPTLKACQALILAPTRELAQQIQKVVVAIGDFMNIECH 99

Query: 354 IITGNMPQAHRRKALERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
              G        KAL+          G+ H +I    L  DS++ +  +L   DE    G
Sbjct: 100 ACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDSMKMF--VLDEADEMLSRG 157

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             +++    +L  ++T   V+L++AT +P+          D+ ++T K   R+P++ ++ 
Sbjct: 158 FTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-REPVRILV- 202

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------RFN 508
              + DE+         EG K ++I  + EE K      + E               + +
Sbjct: 203 ---KKDELT-------LEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVD 252

Query: 509 SLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 253 WLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 311


>gi|260912300|ref|ZP_05918851.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633601|gb|EEX51740.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 447

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 153/350 (43%), Gaps = 54/350 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I  IL+       +L + Q   G+GKT   L+ + + ++ GG        +IM
Sbjct: 25  TPIQEHCIPQILEGKD----ILGVAQ--TGTGKTAAYLLPIMSMLDDGGFPHDAINCIIM 78

Query: 328 APIGILAQQHYEFIKK--YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +P   LAQQ  + ++   Y  ++   + I  GN    + ++ ++ +  G A III T   
Sbjct: 79  SPTRELAQQIDQAMQGFGYYLDSVSSLAIYGGNDGNRYDQE-IKSLRLG-ADIIIATPGR 136

Query: 386 FQDSIQY-----YKLILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPR-- 433
           F   IQ       K+   ++DE  R    G  + +    K   P    ++ +AT  P+  
Sbjct: 137 FISHIQLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKQLPPTCQTIMFSATMPPKIE 196

Query: 434 TLVLTSLGD-IDISKITEKPAGRKPIKTVIIPINRIDEVIERL-------KVVLSEGKKA 485
            L  T L + ++I     KPA +   K  +    +  +V++ +       +V++  GKK 
Sbjct: 197 QLAKTLLKNPVEIKLAVSKPAEKIAQKAYLCYEPQKLKVLQDIFKAGSLNRVIIFSGKK- 255

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
                  ++ KE N   V  + NS           +H  +S  +++ VM  FK+G   +L
Sbjct: 256 -------QKVKEINRALVRMKVNSDE---------MHSDLSQEERDRVMFKFKSGATDVL 299

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +AT ++  GID+ D +++I  +  H     +H++ GR  R E     I L
Sbjct: 300 VATDILSRGIDIDDITMVINYDVPHDVEDYVHRI-GRTARAERDGVAITL 348


>gi|161527751|ref|YP_001581577.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160339052|gb|ABX12139.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus
           SCM1]
          Length = 709

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 143/355 (40%), Gaps = 74/355 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQ---NTQIIV 352
           ++     SGKTL+A++AM + +    G+ + ++P+  LA + +   KK  +     +  V
Sbjct: 43  LVSAPTASGKTLIAMLAMMSYISKNKGKVIYLSPLRALAAEKFSEFKKLEKVGLGNKTKV 102

Query: 353 EIITG---NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
            I TG   N+ +   + ++  + + +   II   A + D I      LVI DE H  G +
Sbjct: 103 GISTGDFENIEKNLEKNSILILTNEKMDSIIRHGAEWIDEIG-----LVIADEVHLIGDE 157

Query: 410 QR----------LKLTQKATAPHVLLMTAT---------------------PIPRTLVLT 438
            R          LKL +  T P ++ ++AT                     P+P +  + 
Sbjct: 158 SRGPTLEMILTQLKLLE--TKPQIVGLSATITNSDEIADWLECVLVENSWRPVPLSEGVC 215

Query: 439 SLGDIDISKIT----EKPAGRKPIKTVIIPINRIDEVI---ERLKVVLSEGKKAYWICPQ 491
             G++ ++  T    E+     PI   +  +    + +   E      S   KA     Q
Sbjct: 216 DAGEVTMADGTVFEVERSIRGTPIDLGVQSVKDGGQSLVFAETRTRSKSLATKAADAISQ 275

Query: 492 IEEKKE-SNFRSVVERFNSLHEH----------FTSSIAIIHGRMSDIDKESVMDSFKNG 540
           I EKKE S      ++  S +EH              +A  H  ++   +E +   F+NG
Sbjct: 276 ILEKKEISQLEKTSKKILSENEHTELVKTLALLVKKGVAFHHAGLNQNCREIIETEFRNG 335

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFG----------LAQLHQLRGRVGR 585
           T KLL +T  +  G++ + A  ++I N   +           + +  QL GR GR
Sbjct: 336 TIKLLSSTPTLAAGVN-LPARRVVISNVNRYNAKVGANRPISILEYKQLCGRAGR 389


>gi|90413621|ref|ZP_01221611.1| primosome assembly protein PriA [Photobacterium profundum 3TCK]
 gi|90325394|gb|EAS41883.1| primosome assembly protein PriA [Photobacterium profundum 3TCK]
          Length = 698

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 9/138 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L A+   + AG QA+I+ P IG+  Q     I ++ +   + +E +
Sbjct: 186 LLEGVTGSGKTEVYLNALEPILAAGKQALILVPEIGLTPQT----INRFRRRFNVPLETV 241

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              +    R  +       QA IIIGT  ALF     ++ L ++IVDE+H    +Q+  L
Sbjct: 242 HSGLNDTERLSSWLAGRDNQAGIIIGTRSALF---TPFHNLGIIIVDEEHDASYKQQDSL 298

Query: 415 TQKATAPHVLLMTATPIP 432
              A    V+      IP
Sbjct: 299 RYHARDLAVMRANKENIP 316


>gi|24374367|ref|NP_718410.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24348927|gb|AAN55854.1|AE015722_4 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 449

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 141/365 (38%), Gaps = 73/365 (20%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL-------IAMAAAVEAGGQA 324
           +PT  QE A+   L   + K+ M        GSGKTL  L       I+  A  +   + 
Sbjct: 23  TPTAIQEQALPIAL---AGKDLMA---SSKTGSGKTLAFLLPALQRVISTRALSKRDPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q Y  ++    NTQ     + G      + KAL +    + H I+ T  
Sbjct: 77  LILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAK----EPHFIVATPG 132

Query: 385 LFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLTQKATAPH----VLLMTATPIP 432
              D ++   L L     +I+DE  R    G   +LK   +A A H     L+ +AT   
Sbjct: 133 RIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEA-ADHKRRQTLMFSAT--- 188

Query: 433 RTLVLTSLGDIDISKITEKPAG--RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
                     +D S+I E  A   + P+   I   +   + I           +  ++C 
Sbjct: 189 ----------LDHSEINEIAAALLKNPLHVAIGTAHAEHQDIS----------QRIYLCD 228

Query: 491 QIEEKKE-----------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            ++ K+                  +  R+  ER  +       + A + G +    +  +
Sbjct: 229 HLDHKEALLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQI 288

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           MD F  G  ++L+ T V   G+D+++ S++I  +   F    +H++ GR GR       I
Sbjct: 289 MDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDAI 347

Query: 594 LLYHP 598
            L  P
Sbjct: 348 SLVGP 352


>gi|325291343|ref|YP_004267524.1| helicase domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324966744|gb|ADY57523.1| helicase domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 578

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 169/392 (43%), Gaps = 73/392 (18%)

Query: 269 IPFSPTKSQESAIKDI-LQDMSQKNRMLR--ILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           +PF  T++QE A++++ L D + K   ++  ++    G+GKT V    +A A+  G + +
Sbjct: 228 LPFQLTRAQEKAVQELRLIDKNMKTGQVKEALVWAACGAGKTEVVFEVIAQALAEGERVL 287

Query: 326 IMAP----IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              P    +   AQ+  +   +  Q+TQ    I++G++P++ R+  L         +   
Sbjct: 288 YATPRRDVVHDTAQRSQQAFPE--QDTQ----ILSGDLPRSFRQAGL---------VTAT 332

Query: 382 THALFQDSIQYYKLI-LVIVDEQHRF----------GVQQRLKLTQKATAPHVLLMTATP 430
           TH ++     YY+   LVI+DE   F          G++Q +K         ++ +TATP
Sbjct: 333 THQVY----HYYQAFDLVILDEMDAFPYYGNKALEYGIRQAMK-----PGARIINLTATP 383

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-----RIDEVIERLKVVLSE---G 482
            P        G + + ++  +   RKP+   ++  +     R   + E++++ LS     
Sbjct: 384 SPEIRKKVQSGQVFLVRLPAR-HHRKPLPVPVLLKSKGLSMRTGSIEEQVRLELSRLRAN 442

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                  P I+         V +  N L   F  S  +     SD D++     F  G  
Sbjct: 443 GPVLVFVPVID--------LVPKIINQLQVSFKGS-KVGGSWSSDPDRQQKTQIFLKGEY 493

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEH--FGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              ++T+++E G+ +    ++++  A+H  F    L Q+ GR GR  E          P 
Sbjct: 494 DFFVSTSILERGVTLNGLQVMVL-FADHPVFDERSLVQMAGRAGRTLE---------RPE 543

Query: 601 SKNSYTRLSVLKNTEDGF-LIAEEDLKQRKEG 631
            K  ++ L++ K  ++    I E++   R+EG
Sbjct: 544 GKVIFSGLTLTKAMKEAVEWIEEQNEIARREG 575


>gi|322785598|gb|EFZ12253.1| hypothetical protein SINV_05205 [Solenopsis invicta]
          Length = 725

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 143/336 (42%), Gaps = 40/336 (11%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G   +I+AP   LAQQ     + +  ++ I   
Sbjct: 155 TGSGKTLAYILPAIVHINNQPRLSRGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNT 214

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR--- 405
            I G  P+  + + LER       I I T       L + +    +   +++DE  R   
Sbjct: 215 CIFGGSPKGPQARDLER----GVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLD 270

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKP 457
             F  Q R  + Q      VL+ +AT  P+ +       LT    I+I  +T   A    
Sbjct: 271 MGFEPQIRKIIEQIRPDRQVLMWSAT-WPKEVQALAEDFLTDYIQINIGSLTL--AANHN 327

Query: 458 IKTVIIPINRIDEVIERLKVVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           I+  II I +  E   +L  +L E G +   +   +E KK+     V +   ++      
Sbjct: 328 IRQ-IIEICQEHEKETKLSQLLREIGAERSKMIIFVETKKK-----VDDITKTIKRDGWP 381

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           +I+I HG  S  +++ V+  F+NG   +L+AT V   G+DV D   +I  +  +     +
Sbjct: 382 AISI-HGDKSQPERDYVLSEFRNGKTMILVATDVAARGLDVEDVKYVINFDYPNSSEDYI 440

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           H++ GR GR +   +    + P  ++ +   ++VL+
Sbjct: 441 HRI-GRTGRCQSAGTAYAYFTPNNARQAKELIAVLE 475


>gi|313674605|ref|YP_004052601.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312941303|gb|ADR20493.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 371

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 142/338 (42%), Gaps = 48/338 (14%)

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           KE+GI   +   +++  ++N    PTK QE  I  ++Q+         + Q   G+GKT 
Sbjct: 4   KELGISDKLIKGLSELNIQN----PTKIQELVIGHLMQNTGD-----LVAQAQTGTGKTA 54

Query: 309 VALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHR 364
              + +   +       QAVI++P   LAQQ    + K+T+ + ++ +E++ G      +
Sbjct: 55  AFGLPILERINPKDDKIQAVILSPTRELAQQIKHQLFKFTKYSDKVFMEVVFGGEKIEKQ 114

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--L 414
            + L+R       I++ T     D I+           ++L   DE    G ++ L+  L
Sbjct: 115 IQNLKR----PTQILVATPGRLNDLIRRKAVDIRDAKLMVLDEADEMLSMGFKKDLEFIL 170

Query: 415 TQKATAPHVLLMTAT-PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI----IPINRID 469
                   + L +AT P     ++    + +  +I  K +G + +   I    +P +  D
Sbjct: 171 NTMKHKKDIWLFSATIPTDIKYIIKQYLEPNAKQI--KASGNELVNEKIMHQYVPCD-TD 227

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMS 526
           E +  L   L   KK   I           F +      +LHE   +   S  I+ G M 
Sbjct: 228 EKMMVLDYFLKTQKKERGII----------FCNTKNSARALHEQLNARKISTGILEGDMH 277

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             D++  M +FKN    LLIAT V   GIDV + + ++
Sbjct: 278 QKDRDKEMRAFKNKKLDLLIATDVAARGIDVANLAFVV 315


>gi|261420592|ref|YP_003254274.1| helicase [Geobacillus sp. Y412MC61]
 gi|319768262|ref|YP_004133763.1| helicase [Geobacillus sp. Y412MC52]
 gi|261377049|gb|ACX79792.1| helicase domain protein [Geobacillus sp. Y412MC61]
 gi|317113128|gb|ADU95620.1| helicase domain protein [Geobacillus sp. Y412MC52]
          Length = 463

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 144/340 (42%), Gaps = 67/340 (19%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           + +QE A   + Q +  ++ +L  +    G+GKT +   A+AAA+E G +  +  P   +
Sbjct: 121 SAAQEDAAMAVKQAVLDRSELL--VWAVCGAGKTEILFPAIAAALEKGWRVGLATPRTDV 178

Query: 334 AQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            +   E   ++ Q   ++ + +  G   +  R  +L         ++  TH L +    Y
Sbjct: 179 VR---ELAPRFRQAFPRVPLAVWHGGSEERGRIASL---------VLSTTHQLLR---AY 223

Query: 393 YKLILVIVDEQHRF--GVQQRLKLT---QKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
               ++IVDE   F   V+  L+      +     ++ +TATP       +    +DI++
Sbjct: 224 RVFDVMIVDEVDAFPYSVEPMLEYAVREARKEQSSLIYLTATP-------SRAWQLDITR 276

Query: 448 ITEK----PA-----------------GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
              K    PA                  RK ++   +P N +  V+ RL    ++GK+A+
Sbjct: 277 GKRKAVVIPARYHGRPLPVPVFEWCGNWRKRLERGRLPENVLAWVLHRL----AQGKQAF 332

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              P I+E         +E    L +     I  +H    D  +   + +F++G   LL+
Sbjct: 333 LFVPHIDE---------LEAVTRLLQRVDPRIVGVHAEAPD--RAEHVQAFRDGRVPLLV 381

Query: 547 ATTVIEVGIDVVDASIIIIENAEH-FGLAQLHQLRGRVGR 585
            TT++E G+ V +  + ++   +  F  + L Q+ GRVGR
Sbjct: 382 TTTILERGVTVPNIDVAVLGAEDRIFTESALVQIAGRVGR 421


>gi|50823|emb|CAA31025.1| unnamed protein product [Mus musculus]
          Length = 407

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 129/291 (44%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 74  IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 133

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 134 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 190

Query: 406 FGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  ++ +  T+  V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 191 RGFKDQIYERVQKLNTSIQVVLLSAT-MP----------TDVLEVTKKFM-RDPIR---I 235

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+      + 
Sbjct: 236 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMQA 295

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 296 IYFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 346


>gi|76798781|ref|ZP_00780996.1| ATP-dependent RNA helicase [Streptococcus agalactiae 18RS21]
 gi|76585865|gb|EAO62408.1| ATP-dependent RNA helicase [Streptococcus agalactiae 18RS21]
          Length = 359

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 133/312 (42%), Gaps = 27/312 (8%)

Query: 303 GSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GSGKT   L+ +   ++      Q VI AP   L  Q Y+  K+  ++++  + ++   +
Sbjct: 48  GSGKTHTFLLPIFEKLDESSDDVQVVITAPSRELGTQIYQATKQIAEHSEQEIRVVN-YV 106

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKL 414
               + + +E++   Q HI+IGT     D ++   L +      +VDE         L  
Sbjct: 107 GGTDKLRQIEKLKVSQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTLDMGFLDT 166

Query: 415 TQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             K          +L+ +AT IP+ L         + K    P   K IKT  +  + ID
Sbjct: 167 VDKIAGSLPKDVQILVFSAT-IPQKLQPF------LKKYLTNPVMEK-IKTATVIADTID 218

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMS 526
             +   K    +  +   +   ++      F +  ER + LH + +S+   +A IHG ++
Sbjct: 219 NWLLSTKG-RDKNAQILELSKLMQPYLAMIFVNTKERADELHSYLSSNGLKVAKIHGGIA 277

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +++ +M+  KN   + ++AT +   GID+   S  +I +A    L+      GR GR 
Sbjct: 278 PRERKRIMNQVKNLEFEYIVATDLAARGIDIEGVS-HVINDAIPQDLSFFVHRVGRTGRN 336

Query: 587 EEISSCILLYHP 598
               + I LY P
Sbjct: 337 GLSGTAITLYQP 348


>gi|301336251|ref|ZP_07224453.1| SNF2 family helicase [Chlamydia muridarum MopnTet14]
          Length = 1163

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAA--VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL  +IA+  +   + GG ++I+ P  ++     EF K   +   ++++ 
Sbjct: 721 ILADDMGLGKTLQTIIAVTQSRLEKGGGCSLIICPTSLVYNWKEEFRKFNPEFKTLVIDG 780

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL---VIVDEQHRFGVQQR 411
           I      + RRK L  +   +  + I ++ L Q  I  YK  L   V++DE H   ++ R
Sbjct: 781 IP-----SQRRKQLSSLE--EYDVAITSYNLLQKDIDIYKDFLFDYVVLDEAHH--IKNR 831

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL-VLTSLGDI 443
                K+     A H L++T TPI  +L  L SL D 
Sbjct: 832 TTRNAKSVKMIRACHRLILTGTPIENSLEELWSLFDF 868


>gi|301299253|ref|ZP_07205539.1| primosomal protein N' [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300853097|gb|EFK80695.1| primosomal protein N' [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 792

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 79/415 (19%), Positives = 153/415 (36%), Gaps = 97/415 (23%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q   +K +  D+      + +LQG  GSGKT V L  +  A+  G  A+++ P   L
Sbjct: 257 TQEQSKVVKKLDDDIENDKARVSLLQGVTGSGKTEVYLQVIDTALNQGKTAIVLVPEISL 316

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             Q    +K++       V  +   +    +     RI   +  +++G  +     ++  
Sbjct: 317 TPQ---MVKRFRARFGTKVAALHSGLSIGEKYDEWRRIEREEVQVVVGARSAIFAPLK-- 371

Query: 394 KLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            L ++IVDE+H          R+  +   K      +  V+  +ATP   +      G  
Sbjct: 372 NLGVIIVDEEHESSYKQDEMPRYNAKDVAKWRGIYHSCPVIFGSATPSLESRARAQKGVY 431

Query: 444 DISKITEKPAG-----------RKPIKTVIIP------INRIDEVIERL-KVVLSEGKKA 485
           D  ++T++              R+ +KT  IP      +N I E +++  ++VL   ++ 
Sbjct: 432 DWLRLTKRVNNQKLPKVQIIDMREAVKTSPIPDFSLKMVNSIQEKLDKKEQIVLLLNRRG 491

Query: 486 Y-------------------------------------------WICPQIEEKKESNFRS 502
           Y                                           + CP    KK   + +
Sbjct: 492 YSTFMMCRECGYVIKCPNCDISLTVHLDSRSLKCHYCGYETRIPYECPSCSSKKIRYYGT 551

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDK-------ESVMDSFKNGTCKLLIATTVIEVGI 555
             ++     +       I+  RM D+D        E ++ +F +G   +L+ T +I  G+
Sbjct: 552 GTQKIEKELKGLFPQARIL--RM-DVDTTRKKGAHEKLLRTFGDGKADILLGTQMIAKGL 608

Query: 556 DVVDASIIIIENAE-HFGLAQ----------LHQLRGRVGRGEEISSCILLYHPP 599
           D  + + + + NA+   G++           L Q+ GR GR ++    I+    P
Sbjct: 609 DFPNVTFVGVLNADTSLGISDFRASERTFQLLTQVSGRAGRSDKDGEVIIQTFNP 663


>gi|45361237|ref|NP_989196.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Xenopus
           (Silurana) tropicalis]
 gi|38649000|gb|AAH63374.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Xenopus
           (Silurana) tropicalis]
          Length = 699

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 86/401 (21%), Positives = 164/401 (40%), Gaps = 76/401 (18%)

Query: 219 EWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-------------IAQK 264
           +W+ P A       EL +G    +     F+K   IP+   G              + + 
Sbjct: 177 DWSKPLAPNDRVEQELFSGSNTGI----NFEKYDDIPVEATGNNCPPHIESFQDVTMGEI 232

Query: 265 ILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           I+ NI  S    PT  Q+ AI  I++    K  ++   Q   GSGKT   L+ + + + A
Sbjct: 233 IMGNIQLSRYTRPTPVQKHAIPIIIE----KRDLMACAQ--TGSGKTAAFLLPILSQIYA 286

Query: 321 GGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            G                      ++++AP   LA Q YE  +K+   +++   ++ G  
Sbjct: 287 DGPGDAMKHLKENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGA 346

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-----FGVQ 409
               + + LER      H+++ T     D ++  K+ L     +++DE  R     F  Q
Sbjct: 347 DIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCNYLVLDEADRMLDMGFEPQ 402

Query: 410 QRLKLTQKATAPHVL---LMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVII 463
            R  + Q    P  +   +M +   P+ + + +   +D      +    +  + I   ++
Sbjct: 403 IRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVV 462

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
            +  +D+    L ++ + GK +  +   +E KK ++    +E F   HE +  +   IHG
Sbjct: 463 WVEEMDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---ALEDF-LYHEGY--ACTSIHG 515

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 516 DRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 556


>gi|4321650|gb|AAD15790.1| putative helicase [Chlamydophila abortus]
          Length = 159

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 18/148 (12%)

Query: 297 ILQGDVGSGKTLVALIAMA-AAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL A+IA+  + +E G G ++I+ P  ++     EF K   +   +I++ 
Sbjct: 2   ILADDMGLGKTLQAIIAITQSKLEKGKGCSLIVCPTSLVYNWKEEFRKFNPEFKAVIID- 60

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL---VIVDEQHRFGVQQR 411
               +P +HRR+ L  ++     + I ++ L Q  I  YK  +   V++DE H   ++ R
Sbjct: 61  ---GVP-SHRRRQLATLS--DYDVAITSYNLLQKDIDVYKDFVFDYVVLDEAHH--IKNR 112

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL 435
                K+     + H L++T TPI  +L
Sbjct: 113 TTRNAKSVKMIRSGHRLILTGTPIENSL 140


>gi|322436188|ref|YP_004218400.1| primosomal protein N' [Acidobacterium sp. MP5ACTX9]
 gi|321163915|gb|ADW69620.1| primosomal protein N' [Acidobacterium sp. MP5ACTX9]
          Length = 875

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 18/199 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
            + Q  A+  I   M +      +L G  GSGKT V   AM  A+ AG  ++++ P IG+
Sbjct: 328 NEEQMEAVGTIAAAMEKGGFRPHLLYGVTGSGKTAVYFAAMRRALAAGRSSLLLVPEIGL 387

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
                 +    + +   ++   +T +     R +   RI  G+A I++GT +     ++ 
Sbjct: 388 TPAMAGQMFAAFGEEVALLHSGLTPD----ERAEQWHRIRRGEARIVVGTRSAVFAPVR- 442

Query: 393 YKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            +L LVIVDE+H          R+  +    +  K +   V+L +ATP   +      G 
Sbjct: 443 -ELGLVIVDEEHDSSYKQEESPRYHGRDVAVMRAKLSDAVVVLGSATPSLESWANAERGR 501

Query: 443 IDISKITEKPAGRKPIKTV 461
             + ++T++ A R P+  V
Sbjct: 502 YALIEVTKRVANR-PLPVV 519


>gi|298708482|emb|CBJ30606.1| eukaryotic initiation factor 4A [Ectocarpus siliculosus]
          Length = 404

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 147/342 (42%), Gaps = 61/342 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+ A+K IL  M +      I Q   G+GKT    +++   ++   A  QA+++AP
Sbjct: 54  PSAIQQRAVKPIL--MGKDC----IAQAQSGTGKTATFAVSILQKIDVAAADCQALVLAP 107

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ  + ++      Q+ V    G       R  +  + +G  HI++GT     D 
Sbjct: 108 TRELAQQIVKVVRALGDFMQLQVHACVGGTAV---RDDIRTLQNG-VHIVVGTPGRVYDM 163

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV--LTSLGDIDISK 447
           I    L L   D    F + +  ++  +     +  +      R  V   ++   +D+ +
Sbjct: 164 ISRGALRL---DRVGLFVLDEADEMLSRGFKDQIYDVFQYLPERVQVALFSATMPLDVLE 220

Query: 448 ITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--------- 496
           +T +  P   +P++ ++    + DE+         EG K ++I    EE K         
Sbjct: 221 VTNRFMP---EPVRILV----KKDELT-------LEGIKQFYIAVDREEWKLDTLCDLYE 266

Query: 497 ---------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                      N R  V+  +   +    +I+ +HG M   +++ +M  F++G+ ++LI 
Sbjct: 267 TLTITQAIIYCNTRRRVDWLSEKMQERDFTISCMHGDMGQGERDVIMREFRSGSSRVLIT 326

Query: 548 TTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
           T ++  GIDV   S++I      N E++    +H++ GR GR
Sbjct: 327 TDLLARGIDVQQVSLVINYDLPTNRENY----IHRI-GRSGR 363


>gi|62088770|dbj|BAD92832.1| DEAD box polypeptide 17 isoform p82 variant [Homo sapiens]
          Length = 737

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 138/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 213 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 270

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 271 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 326

Query: 401 DEQHR-----FGVQ----------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R     F  Q           R  L   AT P  +   A    R     ++G++++
Sbjct: 327 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 386

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 387 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 428

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 429 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 488

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 489 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 540


>gi|62857657|ref|NP_001016781.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Xenopus (Silurana)
           tropicalis]
          Length = 609

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 133/345 (38%), Gaps = 57/345 (16%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +    Y +++++   
Sbjct: 128 TGSGKTLAYLLPAMVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKSSRLKST 187

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 188 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLD 243

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KITE 450
            G +             R  L   AT P  +   A    R  V  ++G++++S    I +
Sbjct: 244 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYVQINIGNLELSANHNILQ 303

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
                  I  V     +  ++I+ ++ +++E           +E K   F     R + L
Sbjct: 304 -------IVDVCQESEKDHKLIQLMEEIMAE-----------KENKTIIFVETKRRCDDL 345

Query: 511 HEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                        IHG  S  +++ V+  F+ G   +LIAT V   G+DV D   +I  +
Sbjct: 346 TRRMRRDGWPAMCIHGDKSQQERDWVLCEFRTGKAPILIATDVASRGLDVEDIKFVINYD 405

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 406 YPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELVKVLE 449


>gi|77464192|ref|YP_353696.1| DNA helicase [Rhodobacter sphaeroides 2.4.1]
 gi|77388610|gb|ABA79795.1| Possible DNA helicase [Rhodobacter sphaeroides 2.4.1]
          Length = 1715

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 156/350 (44%), Gaps = 42/350 (12%)

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALI-AMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           + + M+ +N +L IL    G+GK++   + A++   + G   V+++P+  L     + ++
Sbjct: 315 VAEAMAHQN-VLGILP--TGTGKSVCYQVPALSLFDKTGALTVVISPLVALMADQVQGME 371

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII-IGTHALFQDSIQYY----KLIL 397
           +   ++ + V    G +    R+ AL+R+  GQA I+ I    L   S++      ++ L
Sbjct: 372 RAGISSAVTV---NGMLSMPERQDALDRVRLGQAAILLISPEQLRSVSVRAVLAQREVGL 428

Query: 398 VIVDEQH---RFGVQQR----------LKLTQKATAPHVLLMTATPIP---RTLVLTSLG 441
            ++DE H   ++G   R           + +  AT   VL +TAT  P   R +     G
Sbjct: 429 WVLDEAHCVSKWGHDFRPDYRYIGRFIREFSGDATPAPVLCLTATAKPEVVRDITEHFRG 488

Query: 442 DIDIS-KITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            + +   + +  A R  +   ++     +++ +++  +   L   +++  +       + 
Sbjct: 489 RLGVELGLFDGGATRTNLTFSVLATTKESKLGDIMTTISGHLPADERSGAVIYCATRAET 548

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                 ++R     EHF       H  ++  DK++V + F+ G  +++ AT    +GID 
Sbjct: 549 ERIAEFLKRQGIAAEHF-------HAGLTPDDKQTVQERFRVGDLRVIAATNAFGMGIDK 601

Query: 558 VDASIIIIENAEHFG-LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
            D  +++  +A+  G L    Q  GR GR  + + C+LLYH    +  +T
Sbjct: 602 PDIRLVL--HADIPGSLENYLQEAGRAGRDRQPADCVLLYHSDDVERQFT 649


>gi|15834706|ref|NP_296465.1| SNF2 family helicase [Chlamydia muridarum Nigg]
 gi|8163131|gb|AAF73530.1| helicase, Snf2 family [Chlamydia muridarum Nigg]
          Length = 1181

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAA--VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL  +IA+  +   + GG ++I+ P  ++     EF K   +   ++++ 
Sbjct: 739 ILADDMGLGKTLQTIIAVTQSRLEKGGGCSLIICPTSLVYNWKEEFRKFNPEFKTLVIDG 798

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL---VIVDEQHRFGVQQR 411
           I      + RRK L  +   +  + I ++ L Q  I  YK  L   V++DE H   ++ R
Sbjct: 799 IP-----SQRRKQLSSLE--EYDVAITSYNLLQKDIDIYKDFLFDYVVLDEAHH--IKNR 849

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL-VLTSLGDI 443
                K+     A H L++T TPI  +L  L SL D 
Sbjct: 850 TTRNAKSVKMIRACHRLILTGTPIENSLEELWSLFDF 886


>gi|328555607|gb|AEB26099.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           TA208]
 gi|328913984|gb|AEB65580.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           LL3]
          Length = 479

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAP 329
           PT+ Q   I   LQ          +++   GSGKT    + +  +A   E   QA+I+ P
Sbjct: 25  PTEVQRRVIPAALQKKDL------VVKSQTGSGKTAAFGIPICELADWEENKPQALILTP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I    +  +I    + G      ++  L++    ++H++ GT     D 
Sbjct: 79  TRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQ----KSHVVCGTPGRVLDH 134

Query: 390 IQ-----YYKLILVIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATPIP---RTLVL 437
           I+       +L  V++DE         ++Q   + Q      V ++ +  +P     L  
Sbjct: 135 IEKGTLPLDRLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTMLFSATLPDDVEKLSR 194

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           T + D ++ ++  +    K I+  +      D+      V+++E   +  I  + +E+  
Sbjct: 195 TYMKDPELIEVKAEGLTTKDIEHFVTRAAEEDKSSLLRDVLITENPDSCIIFCRTKER-- 252

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                V++  + L +        IHG M   D+  VM+ FK G  + LIAT V   GID+
Sbjct: 253 -----VIQLTDEL-DRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIATDVAARGIDI 306

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            + S++I  +      + +H+  GR GR       I    P  S+
Sbjct: 307 ENISLVINYDIPLEKESYVHRT-GRTGRAGHRGRAITFVTPSESR 350


>gi|302188635|ref|ZP_07265308.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. syringae
           642]
          Length = 445

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 148/352 (42%), Gaps = 52/352 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AAAVEAGGQAVI 326
           PT  Q +AI   LQ      R LR+     GSGKT   ++ +       A V    +AVI
Sbjct: 23  PTPVQAAAIPLALQ-----GRDLRV-TAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAVI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + +++++Q T +   +ITG      +   L ++      I+IGT    
Sbjct: 77  LLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD----ILIGTPGRL 132

Query: 387 QDSIQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTL- 435
            + +    L L     +++DE  R    G  + ++    + A     +L +AT     L 
Sbjct: 133 LEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLR 192

Query: 436 -----VLTSLGDIDISKITEKPAG-RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                VL     + ++ ++E  +G R  I T        D  + + +V+        W+ 
Sbjct: 193 EMIGKVLKDPQHLQVNSVSELASGTRHQIITA-------DHNVHKEQVL-------NWLL 238

Query: 490 PQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                KK    +N +++ +R             ++HG     D+++ +D  K G  K+++
Sbjct: 239 ANETYKKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
           AT V   G+DV    ++I  +    G   +H++ GR GR G +  +  L+ H
Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICH 349


>gi|296532592|ref|ZP_06895297.1| DNA replication factor Y [Roseomonas cervicalis ATCC 49957]
 gi|296267083|gb|EFH13003.1| DNA replication factor Y [Roseomonas cervicalis ATCC 49957]
          Length = 741

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 26/182 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L G  GSGKT V L A+A  V  G QA+++ P   L+ Q  E  ++       +     
Sbjct: 220 LLTGVTGSGKTEVYLEAVAECVAQGRQALVLLPEIALSTQWLERFERRFGGPPALWHSEL 279

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQ----- 410
           G+     RR     +A G+   ++G   ALF   + Y  L L+IVDE+H    +Q     
Sbjct: 280 GSR---RRRDTWRAVAEGRVAALVGARSALF---LPYPDLGLIIVDEEHETAFKQEEGVV 333

Query: 411 ---------RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK-PIKT 460
                    R +L+Q A     +L++ATP   TL     G      + E+  G   P  T
Sbjct: 334 YHARDMAVVRARLSQAA----CVLVSATPSLETLTNAETGRYASLHLPERHGGAALPAVT 389

Query: 461 VI 462
           VI
Sbjct: 390 VI 391


>gi|262401852|ref|ZP_06078417.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC586]
 gi|262351824|gb|EEZ00955.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC586]
          Length = 460

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 130/313 (41%), Gaps = 45/313 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I QG  GSGKT    + + + +       QA+++ P   LA Q    I+   +    I V
Sbjct: 45  IGQGKTGSGKTAAFGLGVLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRTIHNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF- 406
             + G MP   +  +LE   HG AHI++GT       L +D I   +L  +++DE  R  
Sbjct: 105 LTLCGGMPMGPQIGSLE---HG-AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRML 160

Query: 407 --GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             G Q            QR  L   AT P  +   A  + R  ++     I ++   +  
Sbjct: 161 EMGFQEALEAIIAAAPTQRQTLLFSATYPASIEQVAQSVTRNAMM-----IKVAATHDTS 215

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           + R+    V     R DE +E L ++  +   +   C        +  R V    ++LH+
Sbjct: 216 SIRQYFYNVDGSTAR-DEALETL-LLHHQPTSSVVFC--------NTKREVQNVADALHQ 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              S I + HG M   +++  +  F N +  +L+AT V   G+DV +   +   +     
Sbjct: 266 SGFSVIEL-HGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVFNYDLSRDP 324

Query: 573 LAQLHQLRGRVGR 585
              +H++ GR GR
Sbjct: 325 EVHVHRI-GRTGR 336


>gi|104782944|ref|YP_609442.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95111931|emb|CAK16656.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           entomophila L48]
          Length = 454

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 154/355 (43%), Gaps = 58/355 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV-ALIAMAAAVEAGG-----QAVI 326
           PT  Q +AI   LQ      R LR+     GSGKT    L  +   V+  G     +A+I
Sbjct: 36  PTPVQAAAIPLALQ-----GRDLRV-TAQTGSGKTAAFVLPLLNRLVDLSGPRVEIRALI 89

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + ++ ++Q T I   ++TG      +   L ++      ++IGT    
Sbjct: 90  LLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRKVPD----VLIGTPGRL 145

Query: 387 QDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATA--PHVLLMTATPIPRTLV 436
            + +    L L     +I+DE  R    G  + ++   K        LL +AT       
Sbjct: 146 LEQLNAGNLDLSHVKVLILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGG---- 201

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE--RLKVVLSEGKK-----AYWIC 489
             +L DI I K+ + P          + +N + ++ E  R +++ ++  +       W+ 
Sbjct: 202 -AALRDI-IGKVLKDPEH--------LMLNSVSQLAEGTRQQIITADHDQHKEQIVQWLL 251

Query: 490 PQIEEKKE---SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCK 543
                +K    +N R++ +R   ++ H  +      ++HG     D++  +D FK+G  K
Sbjct: 252 ANETYQKAIIFTNTRALADR---IYGHLVAKEVKAFVLHGEKDQKDRKLAIDRFKDGGSK 308

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
           +L+AT V   G+D+    ++I  +    G   +H++ GR GR G E  +  L+ H
Sbjct: 309 VLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRI-GRTGRAGGEGLAISLITH 362


>gi|330977878|gb|EGH77781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 445

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 148/352 (42%), Gaps = 52/352 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AAAVEAGGQAVI 326
           PT  Q +AI   LQ      R LR+     GSGKT   ++ +       A V    +AVI
Sbjct: 23  PTPVQAAAIPLALQ-----GRDLRV-TAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAVI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + +++++Q T +   +ITG      +   L ++      I+IGT    
Sbjct: 77  LLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD----ILIGTPGRL 132

Query: 387 QDSIQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTL- 435
            + +    L L     +++DE  R    G  + ++    + A     +L +AT     L 
Sbjct: 133 LEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLR 192

Query: 436 -----VLTSLGDIDISKITEKPAG-RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                VL     + ++ ++E  +G R  I T        D  + + +V+        W+ 
Sbjct: 193 EMIGKVLKDPQHLQVNSVSELASGTRHQIITA-------DHNVHKEQVL-------NWLL 238

Query: 490 PQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                +K    +N R++ +R             ++HG     D+++ +D  K G  K+++
Sbjct: 239 ANETYQKAIIFTNTRAMADRLYCRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
           AT V   G+DV    ++I  +    G   +H++ GR GR G +  +  L+ H
Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICH 349


>gi|269838956|ref|YP_003323648.1| ATP-dependent DNA helicase, RecQ family [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790686|gb|ACZ42826.1| ATP-dependent DNA helicase, RecQ family [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 563

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 133/325 (40%), Gaps = 47/325 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK+L+  +A        G  +++ P+  L     E ++      ++ V+ +  +   
Sbjct: 43  TGAGKSLIYQLASQLLP---GVTLVVTPLLALMSDQLEAME------EVGVKAVGFSSLY 93

Query: 362 AHRRKALERIAHGQAHIII-----GTHALFQDSIQYYKLILVIVDEQH---------RFG 407
              R+ALE I  G+  ++       T    ++ +    + L +VDE H         R  
Sbjct: 94  PETREALEGIKRGEIKLVYVTPEGATGGNLREELDDRPVSLFVVDEAHCISEWGYDFRPS 153

Query: 408 VQQRLKLTQKATAPHVLLMTATPIP--RTLVLTSLGDID---ISKITEKPAGRKPIKTVI 462
             Q  ++ ++   P VL +TAT  P  R  +  +LG  D   ++   ++P        + 
Sbjct: 154 YLQLGEVVEEVGRPPVLALTATATPWVRQDIARTLGMRDPLVVAHGFDRP-------NLF 206

Query: 463 IPINRIDEVIER---LKVVLSEGKKAYW--ICPQIEEKKE------SNFRSVVERFNSLH 511
           + ++R+++  +    L+ +LS   +AY   +  +I    E      +N     E      
Sbjct: 207 LQVHRLEQHEDERQVLEALLSGQVEAYTEEVSARIRRALEGPGLIYTNTTRAAEETAGWL 266

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +         HGR    ++E V   F  G  ++++AT    +GID  D   +I  +A   
Sbjct: 267 KEMGIPAGYYHGRRRKSERERVQQDFMEGKLRVVVATNAFGMGIDKPDVRFVIHRDAPA- 325

Query: 572 GLAQLHQLRGRVGRGEEISSCILLY 596
            L   +Q  GR GR  E + C LL+
Sbjct: 326 SLEAYYQEAGRAGRDGEFAFCCLLH 350


>gi|189520693|ref|XP_001923830.1| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Danio rerio]
          Length = 671

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 136/336 (40%), Gaps = 53/336 (15%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 135 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYG 192

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           ++++I    + G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 193 KSSRIKSTCVYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEVGKTNLRRCTYLVL 248

Query: 401 DEQHR-----FGVQ----------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R     F  Q           R  L   AT P  +   A    +  V  ++G +++
Sbjct: 249 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINIGALEL 308

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   + +++I+ ++ +++E +    I   +E KK  +  +
Sbjct: 309 SANHNILQ-------IVDVCMENEKDNKLIQLMEEIMAEKENKTIIF--VETKKRCDELT 359

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
              R +            IHG  S  +++ V+  F++G   +LIAT V   G+DV D   
Sbjct: 360 RRMRRDGW------PAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKF 413

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +I  +  +     +H++ GR  R     +    + P
Sbjct: 414 VINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTP 448


>gi|125526364|gb|EAY74478.1| hypothetical protein OsI_02369 [Oryza sativa Indica Group]
          Length = 792

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 125/298 (41%), Gaps = 61/298 (20%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L+        +     +G   +++AP   LA Q  E   K+ ++++I    
Sbjct: 196 TGSGKTLGYLLPGFMHIKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTC 255

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--- 406
           + G  P+  + + L+R       +++ T     D ++  ++ L     +++DE  R    
Sbjct: 256 LYGGAPKGPQLRDLDR----GVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDM 311

Query: 407 GVQQRLKLTQKATAP--HVLLMTATPIPRTL-----------VLTSLGDID----ISKIT 449
           G + +++   K   P    L+ TAT  P+ +           V  ++G +D     S IT
Sbjct: 312 GFEPQIRKIVKEIPPRRQTLMYTAT-WPKEVRRIAEDLLVHPVQVTIGSVDELVANSAIT 370

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVL---SEGKKAYWICPQIEEKKESNFRSVVER 506
           +          +I P     E + RL+ +L     G K    C        +  R   + 
Sbjct: 371 QN-------VELITP----SEKLRRLEQILRSQDSGSKVLIFC--------TTKRMCDQL 411

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             +L   F +S   IHG  S  ++E V+  F++G   +L+AT V   G+D+ D  ++I
Sbjct: 412 ARTLTRQFGASA--IHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVI 467


>gi|115437436|ref|NP_001043295.1| Os01g0549400 [Oryza sativa Japonica Group]
 gi|143455968|sp|Q5JKF2|RH40_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 40
 gi|57899403|dbj|BAD88050.1| putative ATP-dependent RNA helicase DB10 [Oryza sativa Japonica
           Group]
 gi|113532826|dbj|BAF05209.1| Os01g0549400 [Oryza sativa Japonica Group]
 gi|125570769|gb|EAZ12284.1| hypothetical protein OsJ_02174 [Oryza sativa Japonica Group]
          Length = 792

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 134/319 (42%), Gaps = 62/319 (19%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L+        +     +G   +++AP   LA Q  E   K+ ++++I    
Sbjct: 196 TGSGKTLGYLLPGFMHIKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTC 255

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--- 406
           + G  P+  + + L+R       +++ T     D ++  ++ L     +++DE  R    
Sbjct: 256 LYGGAPKGPQLRDLDR----GVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDM 311

Query: 407 GVQQRLKLTQKATAP--HVLLMTATPIPRTL-----------VLTSLGDID----ISKIT 449
           G + +++   K   P    L+ TAT  P+ +           V  ++G +D     S IT
Sbjct: 312 GFEPQIRKIVKEIPPRRQTLMYTAT-WPKEVRRIAEDLLVHPVQVTIGSVDELVANSAIT 370

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVL---SEGKKAYWICPQIEEKKESNFRSVVER 506
           +          +I P     E + RL+ +L     G K    C        +  R   + 
Sbjct: 371 QN-------VELITP----SEKLRRLEQILRSQDSGSKVLIFC--------TTKRMCDQL 411

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             +L   F +S   IHG  S  ++E V+  F++G   +L+AT V   G+D+ D  ++I  
Sbjct: 412 ARTLTRQFGASA--IHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVINY 469

Query: 567 NAEHFGLAQLHQLRGRVGR 585
           +        +H++ GR GR
Sbjct: 470 DFPTGIEDYVHRI-GRTGR 487


>gi|90424330|ref|YP_532700.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
 gi|90106344|gb|ABD88381.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
          Length = 503

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 145/362 (40%), Gaps = 58/362 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q+ AI  +L     +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 30  TPTPIQDQAIPHVLA----RRDVLGIAQ--TGTGKTAAFVLPMLTLLEKGRARARMPRTL 83

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY    ++ V ++ G +    +   L R       ++I T   
Sbjct: 84  ILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDIKLTR----GVDVLIATPGR 139

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +   L+L     +++DE  R        +      P +  +    P  R TL  T
Sbjct: 140 LLDHTERGGLLLTGVELLVIDEADR--------MLDMGFIPDIERICKLVPFTRQTLFFT 191

Query: 439 SLGDIDISKITE-------KPAGRKPIKTVI------IPINR-IDEVIERLKVVLSEGK- 483
           +    +I +ITE       K    KP  T +      +   R   E  E L+ +L + K 
Sbjct: 192 ATMPNEIRRITETFLHNPVKIEVSKPASTAVTVTQSQVATGREPHEKRETLRRLLRDAKD 251

Query: 484 --KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
              A   C        +  R V     SL +H   S+  +HG M    + + +D F+ G 
Sbjct: 252 LQNAIIFC--------NRKREVALLAKSLEKH-GFSVGALHGDMEQSARTAALDQFRKGE 302

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+A+ V   G+D+ + S +I  +  H     +H++ GR GR     + I +  P  +
Sbjct: 303 LPILVASDVAARGLDIPEVSHVINFDVPHHPDDYVHRI-GRTGRAGRAGTAISIVCPSDT 361

Query: 602 KN 603
           K+
Sbjct: 362 KS 363


>gi|166014135|gb|ABY77970.1| vasa [Thunnus orientalis]
          Length = 644

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/341 (20%), Positives = 136/341 (39%), Gaps = 72/341 (21%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+ +   + A G            +A+I+AP   L  Q Y   +K+   T 
Sbjct: 254 TGSGKTAAFLLPILQQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTC 313

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   ++ G +   H+ + +ER      +++ GT     D I   K+ L     +++DE  
Sbjct: 314 VRPVVVYGGVSTGHQIREIER----GCNVVCGTPGRLLDMIGRGKVGLSKLRYLVLDEAD 369

Query: 405 RF-------------------GVQQRLKLTQKATAPHVLLMTATPIPRT--------LVL 437
           R                      + R  L   AT P  +   A    +T        +V 
Sbjct: 370 RMLDMGFEPDMRRLVGSPGMPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVG 429

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +  D++ + I             +   ++ +++++ LK   +E    +     +E K++
Sbjct: 430 GACSDVEQTFIQ------------VTKFSKREQLLDLLKTTGTERTMVF-----VETKRQ 472

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           ++F   +  F    +  T+SI   HG     ++E  +  F++G C +L+AT+V   G+D+
Sbjct: 473 ADF---IATFLCQEKVPTTSI---HGDREQREREQALADFRSGKCPVLVATSVAARGLDI 526

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            D   ++  +  +     +H++ GR GR       +  Y P
Sbjct: 527 PDVQHVVNFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFYDP 566


>gi|145603147|ref|XP_361955.2| hypothetical protein MGG_04400 [Magnaporthe oryzae 70-15]
 gi|152032534|sp|A4QVP2|IF4A_MAGO7 RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|145011448|gb|EDJ96104.1| hypothetical protein MGG_04400 [Magnaporthe oryzae 70-15]
          Length = 396

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 147/364 (40%), Gaps = 89/364 (24%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR------------------------ 296
           +A K L ++P    +S      D   +M+ K+ +LR                        
Sbjct: 1   MADKGLEDVPEGQIESNYDETVDSFDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKG 60

Query: 297 ---ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +        I
Sbjct: 61  HDVIAQAQSGTGKTATFSISVLQKIDTNVKQCQALILAPTRELAQQIQKVVVAIGDFMNI 120

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDE 402
                 G        KAL+        +++GT     D IQ   L        +L   DE
Sbjct: 121 ECHACIGGTSVRDDMKALQ----DGPQVVVGTPGRVHDMIQRRFLKTDGMKMFVLDEADE 176

Query: 403 QHRFGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
               G  +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P+
Sbjct: 177 MLSRGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPV 222

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE------------- 505
           + ++    + DE+         EG K ++I  + EE K      + E             
Sbjct: 223 RILV----KKDELT-------LEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNT 271

Query: 506 --RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             + + L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   
Sbjct: 272 RRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQV 331

Query: 561 SIII 564
           S++I
Sbjct: 332 SLVI 335


>gi|325183265|emb|CCA17723.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
 gi|325183911|emb|CCA18369.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 660

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 124/301 (41%), Gaps = 45/301 (14%)

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           + + P   LA+Q     +K   +T +    I G  P   +  A          I+IGT  
Sbjct: 173 ICVTPTRELARQVTTEFEKL--DTTLNTVCIYGGTPYQQQNAAF----RSGTDIVIGTTG 226

Query: 385 LFQDSI-----QYYKLILVIVDEQH-------RFGVQQRLKLTQKA-TAPHVLLMTATPI 431
              D I     ++     +I+DE         R  +Q+    TQK+   P +LL +AT I
Sbjct: 227 RIMDHIDRGNLRFANCEFLILDEADTMLEMGFREDIQRIFDATQKSGVKPQILLFSAT-I 285

Query: 432 PRTL--VLTSLGD-----IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           P+ L  +     D     +++ + ++  A    ++ V IP +          ++   GK+
Sbjct: 286 PKWLHEIADRYMDKKYEFVNLVQDSDDQASLD-VQHVAIPCHWQSRPTLLASLLGVYGKQ 344

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
                   E KK+ N  SV       H        ++HG ++   +E+ M +F++G  +L
Sbjct: 345 NARTIIFAETKKDCNELSV-------HPEIKQDCHVLHGDIAQAQRETTMKAFRDGQIRL 397

Query: 545 LIATTVIEVGIDVVDASIIIIENAE----HFGLAQLHQL---RGRVGRGEEISSCILLYH 597
           LIAT V   G+D+   ++ ++ N+E      G A +       GR GR  +   CI LY 
Sbjct: 398 LIATDVAARGLDM---NVDLVINSEPPRKASGYADVDTYVHRSGRTGRAGKKGVCITLYT 454

Query: 598 P 598
           P
Sbjct: 455 P 455


>gi|308175626|ref|YP_003922331.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           DSM 7]
 gi|307608490|emb|CBI44861.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           DSM 7]
          Length = 475

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 142/345 (41%), Gaps = 34/345 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAP 329
           PT+ Q   I   LQ      +   +++   GSGKT    + +  +A   E   QA+I+ P
Sbjct: 25  PTEVQRRVIPAALQ------KKDLVVKSQTGSGKTAAFGIPICELADWEENKPQALILTP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I    +  +I    + G      ++  L++    ++H++ GT     D 
Sbjct: 79  TRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQ----KSHVVCGTPGRVLDH 134

Query: 390 IQ-----YYKLILVIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATPIP---RTLVL 437
           I+       +L  V++DE         ++Q   + Q      V ++ +  +P     L  
Sbjct: 135 IEKGTLPLDRLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTMLFSATLPDDVEKLSR 194

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           T + D ++ ++  +    K I+  +      D+      V+++E   +  I  + +E+  
Sbjct: 195 TYMKDPELIEVKAEGLTTKDIEHFVTRAAEEDKSSLLRDVLITENPDSCIIFCRTKER-- 252

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                V++  + L +        IHG M   D+  VM+ FK G  + LIAT V   GID+
Sbjct: 253 -----VIQLTDEL-DRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIATDVAARGIDI 306

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            + S++I  +      + +H+  GR GR       I    P  S+
Sbjct: 307 ENISLVINYDIPLEKESYVHRT-GRTGRAGHRGRAITFVTPSESR 350


>gi|254579254|ref|XP_002495613.1| ZYRO0B15576p [Zygosaccharomyces rouxii]
 gi|238938503|emb|CAR26680.1| ZYRO0B15576p [Zygosaccharomyces rouxii]
          Length = 491

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 160/381 (41%), Gaps = 82/381 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----AGGQAVIMA 328
           P+K QE A+  +L +  +      I Q   G+GKT    +AM   V        QA+ +A
Sbjct: 123 PSKIQEHALPLLLHNPPRN----MIAQSQSGTGKTAAFSLAMLTRVNPELGEATQAICLA 178

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q  E I++  +  +I  ++I   +P+A      E+    +A +++GT     D
Sbjct: 179 PSRELARQTLEVIQEMGKFAKISTQLI---VPEA-----FEKGQQIKAQVVVGTPGTVLD 230

Query: 389 SIQYYKLI------LVIVDEQHRFGVQQRL--------KLTQKATAPHVLLMTATPIPRT 434
            I+  KLI      + ++DE      +Q L        K   K+T   ++L +AT  P  
Sbjct: 231 LIRR-KLINLSQVKIFVLDEADNMLDKQGLGDQCIRVKKFLPKST--QLVLFSAT-FPDQ 286

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +                   ++  K V+   N ++  ++R +V +S  K+ Y  C     
Sbjct: 287 V-------------------KEYAKRVVPDANSLE--LQRNEVNVSAIKQLYMDCNDESH 325

Query: 495 KKE------------SN--FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
           K E            S+  F S  +  N L+         ++I+HG +   +++ ++D F
Sbjct: 326 KYEVLTELYGLLTIGSSIIFVSTKKTANLLYARLKQEGHQVSILHGDLQSKERDRLIDDF 385

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ------LHQLRGRVGRGEEISS 591
           + G  K+LI T V+  GID+   S+++  +       Q      +H++ GR GR      
Sbjct: 386 REGRSKVLITTNVLARGIDIPTVSMVVNYDLPTTQTGQPDPSTYVHRV-GRTGRFGRKGV 444

Query: 592 CILLYHPPLSKNSYTRLSVLK 612
            I   H    K SY  LS ++
Sbjct: 445 AISFVH---DKKSYQILSSIQ 462


>gi|254704340|ref|ZP_05166168.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|260566411|ref|ZP_05836881.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|260155929|gb|EEW91009.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
          Length = 503

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 162 RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 217

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 218 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 269

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 270 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 317

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 318 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 377

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 378 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|253751272|ref|YP_003024413.1| primosomal protein N' [Streptococcus suis SC84]
 gi|253753173|ref|YP_003026313.1| primosomal protein N' [Streptococcus suis P1/7]
 gi|253754996|ref|YP_003028136.1| primosomal protein N' [Streptococcus suis BM407]
 gi|251815561|emb|CAZ51144.1| putative primosomal protein N' [Streptococcus suis SC84]
 gi|251817460|emb|CAZ55201.1| putative primosomal protein N' [Streptococcus suis BM407]
 gi|251819418|emb|CAR44889.1| putative primosomal protein N' [Streptococcus suis P1/7]
 gi|319757552|gb|ADV69494.1| primosome assembly protein PriA [Streptococcus suis JS14]
          Length = 796

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 30/207 (14%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q  A+++I+  + Q+++   +LQG  GSGKT V L  +   ++ G  A+++ P I +  Q
Sbjct: 264 QAIAVREIVASIGQESQTF-LLQGVTGSGKTEVYLQVIDRVLKMGKTAIMLVPEISLTPQ 322

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               FI ++ Q     V I+   +    +     +I  G A +++G   A+F        
Sbjct: 323 MTNRFISRFGQQ----VAILHSGLSDGEKYDEWRKIEAGNAQVVVGARSAIF---APLTN 375

Query: 395 LILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L ++I+DE+H          R+  +   KL        ++L +ATP   T    S G   
Sbjct: 376 LGVIIIDEEHEATYKQDSNPRYHARDVAKLRADYNRATLVLGSATPSLETRARASRG--- 432

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEV 471
                    GR  +     P+ RI EV
Sbjct: 433 -------VYGRLTLNQRANPLARIPEV 452


>gi|171687533|ref|XP_001908707.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943728|emb|CAP69380.1| unnamed protein product [Podospora anserina S mat+]
          Length = 396

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 148/362 (40%), Gaps = 85/362 (23%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR------------------------ 296
           +A K L ++P    +S      D   +M+ K+ +LR                        
Sbjct: 1   MADKGLEDVPEGQIESNYDETVDSFDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKG 60

Query: 297 ---ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +        I
Sbjct: 61  HDVIAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVAIGDFMNI 120

Query: 351 IVEIITGNMPQAHRRKALERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                 G        KAL           G+ H +I    L  DS++ +  +L   DE  
Sbjct: 121 ECHACIGGTSVRDDMKALGEGPQVVVGTPGRVHDMIQRRFLKTDSMKMF--VLDEADEML 178

Query: 405 RFGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
             G  +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P++ 
Sbjct: 179 SRGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPVRI 224

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE--------------- 505
           ++    + DE+         EG K ++I  + EE K      + E               
Sbjct: 225 LV----KKDELT-------LEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRR 273

Query: 506 RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + + L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S+
Sbjct: 274 KVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSL 333

Query: 563 II 564
           +I
Sbjct: 334 VI 335


>gi|99032027|pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032028|pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032029|pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032030|pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
          Length = 434

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 129/314 (41%), Gaps = 52/314 (16%)

Query: 302 VGSGKTLVALIAMAAAV-------EAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   L+ + + +       E G  Q VI++P   LA Q +   +K+   + + + 
Sbjct: 102 TGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIG 161

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHR--- 405
           I+ G     H+ + + R      H++I T     D      I +     V++DE  R   
Sbjct: 162 IVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD 217

Query: 406 --FGVQQRLKLTQKATAP-HVLLMTATPIP-----------RTLVLTSLGDIDISKITEK 451
             F    R  +T     P H  LM +   P           +  V  ++G +        
Sbjct: 218 MGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG------- 270

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                 +K  I  +N+  +   +L  +LSE      +   +E K+ ++F   +  F S  
Sbjct: 271 -GACSDVKQTIYEVNKYAKR-SKLIEILSEQADGTIVF--VETKRGADF---LASFLSEK 323

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E  T+SI   HG      +E  +  FKNG+ K+LIAT+V   G+D+ +   +I  +    
Sbjct: 324 EFPTTSI---HGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSK 380

Query: 572 GLAQLHQLRGRVGR 585
               +H++ GR GR
Sbjct: 381 IDDYVHRI-GRTGR 393


>gi|58271012|ref|XP_572662.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57228921|gb|AAW45355.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 577

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 159/370 (42%), Gaps = 62/370 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+K QE A+  +L   S   R L I Q   G+GKT    + M + V+      QA+ +AP
Sbjct: 202 PSKIQEKALPLLL---SNPPRNL-IGQSQSGTGKTAAFTLNMLSRVDPTIPTPQAICIAP 257

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E I +  Q TQ+   +    +P +  R +  RI      I+IGT     D 
Sbjct: 258 SRELARQIQEVIDQIGQFTQVGTFLA---IPGSWSRNS--RI---DKQILIGTPGTLVDM 309

Query: 390 IQYYKLIL-------VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           +     IL       +++DE      QQ L   Q      +L     P  + ++ ++  +
Sbjct: 310 LMRGSRILDPRMIRVLVLDEADELIAQQGLG-EQTFRIKQLL----PPNVQNVLFSATFN 364

Query: 443 IDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVL----SEGKK-----AYWICPQ 491
            D+ +  ++  P   K      I + + D  ++ ++ +     SE +K     A + C  
Sbjct: 365 DDVQEFADRFAPEANK------IFLRKEDITVDAIRQLYLECDSEDQKYEALSALYDCLV 418

Query: 492 IEE-----KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           I +     K++     + ER  S   H   ++A +HG     ++++++D F+NG  K+LI
Sbjct: 419 IGQSIVFCKRKVTADHIAERLIS-EGH---AVASLHGDKLSQERDAILDGFRNGETKVLI 474

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQ--------LHQLRGRVGRGEEISSCILLYHP 598
            T VI  GID+   ++++  +    G           +H++ GR GR       ++  H 
Sbjct: 475 TTNVIARGIDIPAVNMVVNYDVPDLGPGGNGPDIETYIHRI-GRTGRFGRKGCSVIFTHD 533

Query: 599 PLSKNSYTRL 608
             SK+   R+
Sbjct: 534 YRSKSDVERI 543


>gi|301163111|emb|CBW22660.1| putative ATP-independent RNA helicase [Bacteroides fragilis 638R]
          Length = 443

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 130/332 (39%), Gaps = 61/332 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA---PIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    GSGKTL  L+ +  +++A  + V +    P   LA Q  +  K     T+    
Sbjct: 39  ILLSPTGSGKTLAFLLPLVGSLKADVKGVQVVVLVPSRELALQIEQVFK--AMGTEFKAM 96

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
              G  P     + ++ +   Q  +IIGT     D     +     + L+++DE  +   
Sbjct: 97  SCYGGRPAMEEHRTMKGM---QPAVIIGTPGRMNDHLSKQNFDASTVSLLVIDEFDKCLE 153

Query: 406 FGVQQRLK-------------LTQKATAPHVLLMTATPIPRTLVLTSL-GDIDISKITEK 451
           FG Q+ +              LT    A  +   T   + RT+ L  L  D++ S++   
Sbjct: 154 FGFQEEMATVIGQLPDLKRRFLTSATDAEEIPQFTG--LNRTIKLDFLTNDVEESRLR-- 209

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                 +  V+ P     E + +L   L       +           N R  V+R ++L 
Sbjct: 210 ------LMKVVSPAKDKIETLYKLLCTLGSSSSIVFC----------NHRDAVDRVSALL 253

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                S    HG M   D+E  +  F+NG+C +L++T +   G+D+ +   II     H+
Sbjct: 254 TEKGVSNERFHGGMEQPDRERALYKFRNGSCPVLVSTDLAARGLDIPEVEHII-----HY 308

Query: 572 GL-----AQLHQLRGRVGRGEEISSCILLYHP 598
            L     A  H+  GR  R +   +  L+ +P
Sbjct: 309 HLPVNEEAFTHR-NGRTARWDATGTSYLILNP 339


>gi|224124820|ref|XP_002319430.1| predicted protein [Populus trichocarpa]
 gi|222857806|gb|EEE95353.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 134/325 (41%), Gaps = 39/325 (12%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKT    I M     A        G  A+++AP   LAQQ  + +K ++++ +  
Sbjct: 159 AETGSGKTAAFTIPMIQHCLAQPTVRRGDGPLALVLAPTRELAQQIEKEVKGFSRSLESF 218

Query: 352 -VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR 405
              I+ G    A +R  L         +I+ T     D +Q       ++  +++DE  R
Sbjct: 219 RTAIVVGGTNIADQRLEL----RAGVDVIVATPGRLIDHLQQGNTSLSRISFIVLDEADR 274

Query: 406 -----FGVQQRLKLTQKATAPHVLLMTAT-PIP-RTLV---LTSLGDIDISKITEKPAGR 455
                F  Q R  +         LL +AT P+   TL    LTS   + + K++   A  
Sbjct: 275 MLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIETLTQEYLTSPVQVRVGKVSSPTANV 334

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ----IEEKKESNFRSVVERFNSLH 511
             I T +    +ID ++  L    S+ +++    P     +E K   N     E   +L 
Sbjct: 335 SQILTKVSESEKIDCLLALLVEDASQAERSNQPFPLTIVFVERKTRCN-----EVAEALV 389

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                ++A+ HG  S  D+E+ +  F++G+  +L+AT V   G+DV   + +I  +    
Sbjct: 390 AQALQAVAL-HGGRSQSDREAALRDFRSGSTSILVATDVASRGLDVTGVAHVINLDLPKT 448

Query: 572 GLAQLHQLRGRVGRGEEISSCILLY 596
               +H++ GR GR          Y
Sbjct: 449 MEDYVHRI-GRTGRAGSTGQATSFY 472


>gi|194751055|ref|XP_001957842.1| GF23818 [Drosophila ananassae]
 gi|190625124|gb|EDV40648.1| GF23818 [Drosophila ananassae]
          Length = 795

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 134/322 (41%), Gaps = 47/322 (14%)

Query: 302 VGSGKT-------LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT       L+ L+         G   +I+AP   L+ Q Y   KK+ +   + V 
Sbjct: 311 TGSGKTAAFIWPLLMHLMDQKELQPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVV 370

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRF-- 406
              G   +  + KALE+     A I++ T     D ++       ++  +++DE  R   
Sbjct: 371 CCYGGGSKWEQSKALEQ----GAEIVVATPGRMIDMVKMKATNLKRVTFLVLDEADRMFH 426

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITE---KPAGRKPIKT 460
            G + +++       P    LL +AT   R   L      D  +I +     A +   ++
Sbjct: 427 MGFEPQVRSICNHVRPDRQTLLFSATFKKRIERLARDVLTDPVRIVQGDLNEANQDITQS 486

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           V +   P+ + + ++  L   LSEG    ++  + + +  +N   +V+ +N L       
Sbjct: 487 VFVFPNPLQKWNWLLCHLVKFLSEGSVLIFVTKKADAETVAN-NLLVKEYNCL------- 538

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-- 575
             ++HG M   D+  V+  FK   C +L+AT V   G+D     I  I N  ++ +A+  
Sbjct: 539 --LLHGDMDQADRNKVITQFKKKECDILVATDVAARGLD-----IPHIRNVVNYDIARDI 591

Query: 576 -LHQLR-GRVGRGEEISSCILL 595
             H  R GR GR  E  +   L
Sbjct: 592 DTHTHRIGRTGRAGEKGNAFTL 613


>gi|121705144|ref|XP_001270835.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           clavatus NRRL 1]
 gi|134034143|sp|A1CJT5|IF4A_ASPCL RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|119398981|gb|EAW09409.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           clavatus NRRL 1]
          Length = 398

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 132/301 (43%), Gaps = 62/301 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    ++      QA+I+AP   LAQQ  + +        +   
Sbjct: 66  IAQAQSGTGKTATFSISALQKIDPNLKACQALILAPTRELAQQIQKVVVAIGDFMSLECH 125

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRF-- 406
              G        KAL+        +++GT    QD IQ       ++ L I+DE      
Sbjct: 126 ACIGGTNVREDMKALQ----DGPQVVVGTPGRVQDMIQRRVLRTDQMKLFILDEADEMLS 181

Query: 407 -GVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G  +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P++ +
Sbjct: 182 RGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPVRIL 227

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------R 506
           +          ++ ++ L EG K ++I  + EE K      + E               +
Sbjct: 228 V----------KKQELTL-EGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 276

Query: 507 FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++
Sbjct: 277 VDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 336

Query: 564 I 564
           I
Sbjct: 337 I 337


>gi|259502427|ref|ZP_05745329.1| ATP-dependent helicase RecQ [Lactobacillus antri DSM 16041]
 gi|259169570|gb|EEW54065.1| ATP-dependent helicase RecQ [Lactobacillus antri DSM 16041]
          Length = 596

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 129/337 (38%), Gaps = 48/337 (14%)

Query: 289 SQKNRMLRILQGD-------VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            QK  + R++ G+        G GK+L   I   A V+ G   V+   I ++  Q    +
Sbjct: 19  GQKEVISRVINGENVLAVMPTGGGKSLCYQIP--ALVKPGVTLVVSPLISLMKDQ----V 72

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLI 396
               QN  I    I   +PQA     L +   G+  +I  T        F+  + +  + 
Sbjct: 73  DALRQNG-IAAAAINSTIPQAEVNPILRQAYEGRIKLIYVTPERLNMEYFRYQLNFLPVD 131

Query: 397 LVIVDEQH---RFG-------VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD---I 443
           LV +DE H   ++G        Q +  + Q  + P++L +TAT  P   V   +G+   I
Sbjct: 132 LVAIDEAHCISQWGHDFRPAYRQLKAAIDQLRSRPNILALTATATP--AVQADIGEQLAI 189

Query: 444 DISKITEKPAGRKPIK-TVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           + +        R  I   V+ P N     I E L     E    Y            N R
Sbjct: 190 EKANFVVTSFARPNISFQVVHPTNSSRRYIREYLAKHQDEAGIIY-----------VNTR 238

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             V++  +       S+A  H  M    +  V D F+      ++AT+   +GID  +  
Sbjct: 239 KGVDQLTAYLLEHQLSVAAYHAGMDPASRARVQDDFQFDRVSTIVATSAFGMGIDKSNVR 298

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +I   +    +   +Q  GR GR    S  IL+YHP
Sbjct: 299 FVIHATSAQ-NIESYYQEAGRAGRDGLPSEAILIYHP 334


>gi|213410166|ref|XP_002175853.1| translation initiation factor eIF4A [Schizosaccharomyces japonicus
           yFS275]
 gi|212003900|gb|EEB09560.1| translation initiation factor eIF4A [Schizosaccharomyces japonicus
           yFS275]
          Length = 392

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 135/321 (42%), Gaps = 60/321 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AI  IL D         + Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 42  PSAIQQRAIVPILGDRD------VLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH------GQAHIIIGTH 383
              LAQQ  + +        +      G         AL+   H      G+ H +I   
Sbjct: 96  TRELAQQIQKVVVALGDLMNVECHACIGGTLVREDMAALQAGVHVVVGTPGRVHDMIQRR 155

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLG 441
           AL  D+++ +  +L   DE    G + ++    +   P   V+L++AT +P+        
Sbjct: 156 ALPTDAVKMF--VLDEADEMLSRGFKDQIYDIFQLLPPTSQVVLLSAT-MPQ-------- 204

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D+ ++T K   R P++ ++    + DE+         EG K +++  + EE K     
Sbjct: 205 --DVLEVTTKFM-RDPVRILV----KKDELT-------LEGIKQFYVAVEKEEWKLDTLC 250

Query: 502 SVVE---------------RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCK 543
            + E               + + L E  T    +++ +HG M    ++ +M  F+ G+ +
Sbjct: 251 DLYETITVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDILMHEFRTGSSR 310

Query: 544 LLIATTVIEVGIDVVDASIII 564
           +LI T ++  GIDV   S++I
Sbjct: 311 ILITTDLLARGIDVQQVSLVI 331


>gi|50914756|ref|YP_060728.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
 gi|50903830|gb|AAT87545.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 447

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 150/354 (42%), Gaps = 36/354 (10%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAV 318
           Q+ L  I F +PT+ Q+  I      +    R L + +   GSGKT   L+ +       
Sbjct: 13  QQALEEIGFVNPTEVQQRLIP-----IVNSGRDL-VGESKTGSGKTHTFLLPIFEKLDEA 66

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN-MPQAHRRKALERIAHGQAH 377
           +A  Q VI AP   LA Q ++  K+  +++Q   EI   N +    + + +E++   Q H
Sbjct: 67  KAEVQVVITAPSRELATQIFDACKQIAKHSQ--EEIRLANYVGGTDKLRQIEKLKGSQPH 124

Query: 378 IIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMT 427
           I+IGT     D ++      +K    +VDE         L    K  A       +L+ +
Sbjct: 125 IVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKSVQILVFS 184

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           AT IP+ L         + K    P   + IKT  +  + ID  +   K     G+    
Sbjct: 185 AT-IPQKLQPF------LKKYLTNPVIEQ-IKTKTVIADTIDNWLVSTKGRDKNGQ-LLE 235

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKL 544
           I   ++      F +  ER + LH   T++   +A IHG +   +++ +M+  K    + 
Sbjct: 236 ILKTMQPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDFEY 295

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 296 IVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGMAGTAITLYQP 348


>gi|85716308|ref|ZP_01047281.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
 gi|85696824|gb|EAQ34709.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
          Length = 482

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 142/357 (39%), Gaps = 58/357 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           SPT  Q+ AI  +L     +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 23  SPTPIQDQAIPHVLA----RRDVLGIAQ--TGTGKTAAFVLPMLTLLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +   L+L     +++DE  R        +      P +  +    P  R TL  T
Sbjct: 133 LLDHTERGGLLLTGVELLVIDEADR--------MLDMGFIPDIERICKLVPFTRQTLFFT 184

Query: 439 SLGDIDISKITEK--------PAGRKPIKTVIIPINRID------EVIERLKVVLSEGKK 484
           +    +I ++T+            R       +  +++       E  E L+ +L E K+
Sbjct: 185 ATMPNEIRRVTDAFLHNPQRIEVSRPATTAATVTQSQVSCSREPHEKRELLRHLLREAKE 244

Query: 485 ---AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
              A   C        +  R V   + SL +H   S+  +HG M    + + +D F+ G 
Sbjct: 245 LKNAIIFC--------NRKRDVAIVYKSLQKH-GFSVGALHGDMDQSARTASLDQFRKGE 295

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             LL+A+ V   G+D+ + S ++  +  H     +H++ GR GR     + I +  P
Sbjct: 296 LPLLVASDVAARGLDIPEVSHVLNFDVPHHPDDYVHRI-GRTGRAGRTGTAITIVCP 351


>gi|297183584|gb|ADI19711.1| hypothetical protein [uncultured bacterium EB000_36F02]
          Length = 652

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 11/130 (8%)

Query: 285 LQDMSQKNRMLRI--LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFI 341
           L+ M++ N   R+  LQG  GSGKT+V   A+   ++ G Q ++M P IG+  Q    F 
Sbjct: 132 LKKMNEYNEKFRVHVLQGTTGSGKTMVYFEALKQLIKKGFQGLVMLPEIGLTGQ----FE 187

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIV 400
           KK+ +       +    + + ++      I +G+   +IG   +LF   + + KL L+IV
Sbjct: 188 KKFVEFFGFKPAVWHSGVSKKNKEIIWSGITNGEIKAVIGARSSLF---LPFKKLGLIIV 244

Query: 401 DEQHRFGVQQ 410
           DE++    +Q
Sbjct: 245 DEEYDQSYKQ 254


>gi|293401901|ref|ZP_06646041.1| DEAD/DEAH box family ATP-dependent RNA helicase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304559|gb|EFE45808.1| DEAD/DEAH box family ATP-dependent RNA helicase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 580

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 137/310 (44%), Gaps = 39/310 (12%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEI 354
           + + G+GKT    I     V  G +   A+I+ P   L  Q    ++K+++  + + +  
Sbjct: 45  RSNTGTGKTAAFGIPAIEKVIPGNKFPNALIICPTRELVTQVATELRKFSKYKEGVKIVP 104

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQ 409
           I G  P   + + L+R       I++GT     D +    L L     +I+DE       
Sbjct: 105 IYGGQPIDRQIQLLKR----GCGIVVGTPGRIMDHLNRRTLKLQDVNMIILDE-----AD 155

Query: 410 QRLKLTQKATAPHVL-LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           + L +  K     +L +M A    +T++ ++     I KITE+   + P++  I    R 
Sbjct: 156 EMLNMGFKEDIEEILSMMPADNEHQTILFSATWPQAILKITEQ-FQKDPVRVEIKSSQRT 214

Query: 469 DEVIERLKVVLSEGKKAYWI-------CPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            + +E++      GKKA  +        P +     +  + V E    L++H   + ++ 
Sbjct: 215 IDTVEQIYYEAPRGKKANALRVLLNHYDPDLCMIFCNTKKMVDELCEELNKHDIKATSL- 273

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----L 576
           HG M    +  VM+ F+NGT  +LIAT V   GIDV D  +++     +F + Q     +
Sbjct: 274 HGDMKQEFRSRVMEQFRNGTSPILIATDVAARGIDVDDIDLVV-----NFDIPQDMEYYI 328

Query: 577 HQLRGRVGRG 586
           H++ GR GR 
Sbjct: 329 HRV-GRTGRA 337


>gi|261278667|pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
 gi|261278668|pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
          Length = 508

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 146/353 (41%), Gaps = 71/353 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + M + V+A     QA+ +AP   LA+Q  + + +  + T++   
Sbjct: 162 IGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTA 221

Query: 354 I-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRFG 407
             I  ++P+          A   A I+IGT     D ++  +L      + ++DE     
Sbjct: 222 FGIKDSVPKG---------AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNML 272

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP-IN 466
            QQ L   Q     H+L     P    +VL S      S+  EK A R        P  N
Sbjct: 273 DQQGLG-DQSMRIKHLL-----PRNTQIVLFS---ATFSERVEKYAER------FAPNAN 317

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL---------------- 510
            I    E L V   EG K  ++  Q EE K   +  +VE +  L                
Sbjct: 318 EIRLKTEELSV---EGIKQLYMDCQSEEHK---YNVLVELYGLLTIGQSIIFCKKKDTAE 371

Query: 511 --HEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 T+   ++A + G +    ++++MDSF+ GT K+L+ T VI  GIDV   ++++ 
Sbjct: 372 EIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN 431

Query: 566 ENA--EHFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +   +  G       LH++ GR GR   +   I   H    K S+  ++ ++
Sbjct: 432 YDMPLDQAGRPDPQTYLHRI-GRTGRFGRVGVSINFVH---DKKSWEEMNAIQ 480


>gi|159154994|gb|AAI54494.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 132/331 (39%), Gaps = 57/331 (17%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +    Y ++++I   
Sbjct: 141 TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKST 200

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 201 CVYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLD 256

Query: 407 -GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KITE 450
            G + +++            L   AT P  +   A    +  V  ++G +++S    I +
Sbjct: 257 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQ 316

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
                  I  V +   + +++I+ ++ +++E           +E K   F    +R + L
Sbjct: 317 -------IVDVCMENEKDNKLIQLMEEIMAE-----------KENKTIIFVETKKRCDEL 358

Query: 511 HEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                        IHG  S  +++ V+  F++G   +LIAT V   G+DV D   +I  +
Sbjct: 359 TRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYD 418

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             +     +H++ GR  R     +    + P
Sbjct: 419 YPNSSEDYVHRI-GRTARSTNKGTAYTFFTP 448


>gi|15836382|ref|NP_300906.1| SWI/SNF family helicase_2 [Chlamydophila pneumoniae J138]
 gi|8979223|dbj|BAA99057.1| SWI/SNF family helicase_2 [Chlamydophila pneumoniae J138]
          Length = 1166

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 18/148 (12%)

Query: 297 ILQGDVGSGKTLVALIAMA-AAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL A+IA+  + +E G G ++I+ P  ++     EF +K+  N +    +
Sbjct: 724 ILADDMGLGKTLQAIIAVTQSKLEKGSGCSLIVCPTSLVYNWKEEF-RKF--NPEFRTLV 780

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK---LILVIVDEQHRFGVQQR 411
           I G +P + RRK L  +A     + I ++ L Q  ++ YK   L  V++DE H   ++ R
Sbjct: 781 IDG-VP-SQRRKQLTALA--DRDVAITSYNLLQKDVELYKSFRLDYVVLDEAHH--IKNR 834

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL 435
                K+     + H L++T TPI  +L
Sbjct: 835 TTRNAKSVKMIQSDHRLILTGTPIENSL 862


>gi|67522354|ref|XP_659238.1| hypothetical protein AN1634.2 [Aspergillus nidulans FGSC A4]
 gi|40745598|gb|EAA64754.1| hypothetical protein AN1634.2 [Aspergillus nidulans FGSC A4]
          Length = 767

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 129/303 (42%), Gaps = 50/303 (16%)

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAH---GQA 376
           G  A+++AP   LAQQ     KK+T+     +V I+ G+        + E  A+     A
Sbjct: 409 GPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGH--------SFEEQAYSLRNGA 460

Query: 377 HIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRL---------------- 412
            III T     D I+   L+L     VI+DE  R    G ++ +                
Sbjct: 461 EIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDT 520

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           +  + ++A    L +     +T++ T+     + +I  K   R  I T+      +D V 
Sbjct: 521 EEAEDSSAMSRHLGSKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVE 580

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----------SIAIIH 522
           +R++++  E K+   +    E     +FR  +  F ++  +  +          S   +H
Sbjct: 581 QRVEMIAGEDKRKKRLG---EILSSGDFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLH 637

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G  +   +E+ + S +NG+  +L+AT +   GIDV D S++I  N      +  H++ GR
Sbjct: 638 GSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRI-GR 696

Query: 583 VGR 585
            GR
Sbjct: 697 TGR 699


>gi|297564234|ref|YP_003683207.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848683|gb|ADH70701.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 764

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/354 (21%), Positives = 143/354 (40%), Gaps = 52/354 (14%)

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           D+++  R + I  G   SGK+L  L+  A A++AGG  + ++P   LAQ    +I   + 
Sbjct: 66  DLARSGRDVIIATG-TASGKSLAFLLPAADAIDAGGTVLYLSPTKALAQDQLRWITDLSL 124

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQ---------AHIIIGTHALFQDSIQYYKLIL 397
              +   +  G+ P   R    E   HG           H I+  H  +   ++  +L  
Sbjct: 125 -PGMRTAVYDGDTPAEERSWVRE---HGNYVLTNPDMLHHGILPRHGAWARFLR--RLRY 178

Query: 398 VIVDEQHR----FG--VQQRLKLTQKATA-----PHVLLMTATPIPRTLVLTSLGDIDIS 446
           V++DE HR    FG  V Q L+  ++  A     P  +L +AT          L  + ++
Sbjct: 179 VVIDEAHRYRGVFGSHVAQILRRLRRVCARYRSRPVFVLASATSGSPAESAARLTGVPVT 238

Query: 447 KITEKPAGRKPIKTVII-------------PINRI--DEVIERLKVVLSEGKKAYWICPQ 491
            ++   + R  +   ++             PI R    +  E L  ++ +G +   +  +
Sbjct: 239 AVSRDGSPRPGMSVALVEPELTDLTGEHGAPIRRTAPSQAAEMLADLVRDGVRTL-VFVR 297

Query: 492 IEEKKE----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             +  E    +  R + ER +         +A   G     ++  + ++ ++G    L +
Sbjct: 298 SRQGAEVVALTTQRLLAERGD---HALAGRVAAYRGGYLASERRELEEALRSGEILGLAS 354

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG-RGEEISSCILLYHPPL 600
           T  +E+G+D+     ++I       LA L Q  GR G RGE+  +  +    PL
Sbjct: 355 TNALELGVDISGLDAVLIAGWPGT-LASLWQQAGRAGRRGEDALAVFIARDDPL 407


>gi|223983404|ref|ZP_03633590.1| hypothetical protein HOLDEFILI_00870 [Holdemania filiformis DSM
           12042]
 gi|223964576|gb|EEF68902.1| hypothetical protein HOLDEFILI_00870 [Holdemania filiformis DSM
           12042]
          Length = 474

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 153/366 (41%), Gaps = 44/366 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           PT  QE  I   L+          ++Q   GSGKT    + +       +   QA+I+AP
Sbjct: 26  PTPVQEQVIPAFLEGRD------CLVQAKTGSGKTAAYALPVCQQCHFEDRLPQALILAP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I+ ++   ++    + G  P   ++  L++    +  I+IGT     D 
Sbjct: 80  TRELADQITQEIQNFSLFRRLTCARLVGRQPMKSQKYQLKQ----RVQIVIGTPGRVWDH 135

Query: 390 IQ-----YYKLILVIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT- 438
           I+       +L ++++DE  +    G+ + +   L Q  +     L +AT  P  L L  
Sbjct: 136 IEQGTLDLSQLKMIVLDEADQMFSLGLTETVHQILEQLPSPIQTCLFSATLSPEILQLAE 195

Query: 439 -SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKK 496
            ++ D    +I       + I+   + ++  +++   L V  + +   A   C      +
Sbjct: 196 ITVHDPLTIQIDSPCQTNQNIRLTSLTVSNTEKLTGLLHVFSTIQAPSAIVFC-----DR 250

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           +     V E+   L +    + A+ HG M    + +V+  F+ G  ++L AT V   G+D
Sbjct: 251 QMTAEEVAEQ---LKKRGLCADAL-HGGMEQDQRFAVLKQFRQGQLRILCATDVAARGLD 306

Query: 557 VVDASIIIIE----NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +   S+I+      N E F    +H+  GR GR +++ + + L  P       + L  L+
Sbjct: 307 IDGLSLIVHWDLPLNLESF----IHRC-GRCGRIDQLGTSVALLTPSQKSRYSSFLETLE 361

Query: 613 NTEDGF 618
             ++ F
Sbjct: 362 TQDEAF 367


>gi|160933491|ref|ZP_02080879.1| hypothetical protein CLOLEP_02337 [Clostridium leptum DSM 753]
 gi|156867368|gb|EDO60740.1| hypothetical protein CLOLEP_02337 [Clostridium leptum DSM 753]
          Length = 824

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 19/206 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T+ Q+ A ++ L      +  + +L G  GSGKT V L  +  AVE     ++M P I +
Sbjct: 283 TQEQQRAYEEQLAQYQSPDGGISLLYGVTGSGKTSVFLKLIDRAVEDKRGVILMVPEISL 342

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F ++Y +     V +    +    R    +R+ +G A I +GT  A+F     
Sbjct: 343 TPQMLALFQRRYGRQ----VAVFHSGLSMGERLDEWKRVKNGDALIALGTRSAVF---AP 395

Query: 392 YYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           +  L L+I+DE+           RF  ++  K   +     + L +ATP   +  L   G
Sbjct: 396 FENLGLIIMDEEQEYTYKSEQAPRFHAREIAKFRCRWHRCLLTLASATPSVESYYLAQKG 455

Query: 442 DIDISKITEKPAGRKPIKTVIIPINR 467
              +S I+ +  G K  + V+  +N+
Sbjct: 456 VYSLSTISNRYGGAKLPRVVVADMNQ 481


>gi|62740097|gb|AAH94097.1| Unknown (protein for MGC:115016) [Xenopus laevis]
          Length = 695

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 89/425 (20%), Positives = 171/425 (40%), Gaps = 77/425 (18%)

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGI 253
            K  F       +   + R  +D +W+ P A       EL +G    +     F+K   I
Sbjct: 151 DKSGFGRFDRGNSRWSDDRNDED-DWSKPLAPNDRVEQELFSGSNTGI----NFEKYDDI 205

Query: 254 PINVEGK-------------IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLR 296
           P+   G              + + I+ NI  +    PT  Q+ AI  I++    K  ++ 
Sbjct: 206 PVEATGSNCPPHIESFHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIE----KRDLMA 261

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------------------AVIMAPIGILAQ 335
             Q   GSGKT   L+ + + + A G                      ++++AP   LA 
Sbjct: 262 CAQ--TGSGKTAAFLLPILSQIYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAV 319

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           Q YE  +K+   +++   ++ G      + + LER      H+++ T     D ++  K+
Sbjct: 320 QIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKI 375

Query: 396 IL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVL---LMTATPIPRTLVLTSLGD 442
            L     +++DE  R     F  Q R  + Q    P  +   +M +   P+ + + +   
Sbjct: 376 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDF 435

Query: 443 ID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           +D      +    +  + I   ++ +  +D+    L ++ + GK +  +   +E KK ++
Sbjct: 436 LDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNATGKDSLTLV-FVETKKGAD 494

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
               +E F   HE +  +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +
Sbjct: 495 ---ALEDF-LYHEGY--ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 548

Query: 560 ASIII 564
              +I
Sbjct: 549 VKHVI 553


>gi|119946493|ref|YP_944173.1| primosomal protein N' [Psychromonas ingrahamii 37]
 gi|119865097|gb|ABM04574.1| replication restart DNA helicase PriA [Psychromonas ingrahamii 37]
          Length = 753

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 95/415 (22%), Positives = 158/415 (38%), Gaps = 102/415 (24%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q  AI  + Q +   N  L  L+G  GSGKT V L  +   + AG QA+++ P IG+
Sbjct: 217 TVEQAIAISCVNQQLEAFNCFL--LEGITGSGKTEVYLNIIKPVLLAGKQALVIVPEIGL 274

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q     IK++     + V +    +    +         G   IIIGT  ++F D   
Sbjct: 275 TPQT----IKRFQARFNVPVYLKHSGLNPREQLDTWLHAKQGSGAIIIGTRSSIFCD--- 327

Query: 392 YYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           +  L L+I+DE+H    +Q+           +K       P ++L +ATP   TL     
Sbjct: 328 FKNLGLIILDEEHDASFKQQDGFRYHARDFAIKRAALQKIP-IILGSATPSLETLNNALQ 386

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRI-------DEVIERLK--------VVLSEGKKA 485
           G      +TE+P   KP    +I +  +        ++IE +K        V+L   ++ 
Sbjct: 387 GKYQHLHLTERPGNAKPPTNSLINLAGLPLKSGLSPQLIELMKKHLDKNNQVILFLNRRG 446

Query: 486 Y----------WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD-------- 527
           Y          W+   ++  +   F +  +  N LH H  +S   +  +  D        
Sbjct: 447 YAPVLMCHECGWL---VKCGRCDAFYTYHKSANYLHCHHCASTLPVPHQCDDCGSTQLNS 503

Query: 528 -----------------------IDKESV---------MDSFKNGTCKLLIATTVIEVG- 554
                                  ID+++          +    +G  K+L+ T ++  G 
Sbjct: 504 TGVGTEQLEETLNDLFPDHPTVRIDRDNTRKKESFNQYLTDINSGKYKILLGTQMLAKGH 563

Query: 555 --IDVVDASIIIIENAEHFG-------LAQLH-QLRGRVGRGEEISSCILLYHPP 599
              DV   ++I ++ A           LAQL  Q+ GR GR E+    +L  H P
Sbjct: 564 HFPDVTLVALIDVDGALFCNDYRASERLAQLFTQVSGRAGRAEKKGQVVLQTHHP 618


>gi|295692541|ref|YP_003601151.1| comf operon protein 1 [Lactobacillus crispatus ST1]
 gi|295030647|emb|CBL50126.1| COMF operon protein 1 [Lactobacillus crispatus ST1]
          Length = 426

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 147/343 (42%), Gaps = 50/343 (14%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q++    ++Q+  Q+   L  +    G+GKT +    +A  ++ G +A I  P I +
Sbjct: 93  TPLQQNISDKLVQNFEQRKNTL--VHAVTGAGKTEMLFQLIAQCMKKGKRACIATPRIDV 150

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK----ALERIAHGQAHIIIGTHALFQD 388
           + +    F   + Q     VEI      + H R+     LE++       I  TH L   
Sbjct: 151 VNELFPRFSAAFAQ-----VEI-----GKYHGREFKEIGLEQLT------ICTTHQL--- 191

Query: 389 SIQYYKLI-LVIVDEQHRFGVQQRLKLTQKA-----TAPHVLLMTATPIPRTLVLTSLGD 442
            +++Y+   L+++DE   F      +L   A     T    + +TATP    L+    G 
Sbjct: 192 -MKFYRAFDLLVIDEVDSFPYVGNPQLHFAAKNAVKTTGTRMYLTATPTNDLLLEAKTGK 250

Query: 443 IDISKITEK-PAGRKPI---KTVIIPINRIDEV----IERLKVVLSEGKKAYWICPQIEE 494
           ++I ++  +   G  P+   +  I P  R  ++    ++ +K V+  G       P+IEE
Sbjct: 251 LEILRLNRRFHGGLLPVPRERFFIRPFLRKGQIHPKLMQEIKKVIQSGHPLLLFVPRIEE 310

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                   +     +L +   + I +      D  +   + +F++    LL+ TT++E G
Sbjct: 311 --------IPLYQEALRKKLQNKIKLAGVHAQDPQRLEKVQAFRDRKYDLLLTTTILERG 362

Query: 555 IDVVDASIIIIENAEH-FGLAQLHQLRGRVGRGEEISSCILLY 596
           +   +  +III   +  +  A L Q+ GRVGR  +  + ++LY
Sbjct: 363 VTFKNVWVIIIAADDAIYTAASLVQIAGRVGRAHDDQTGLVLY 405


>gi|225574495|ref|ZP_03783105.1| hypothetical protein RUMHYD_02572 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038282|gb|EEG48528.1| hypothetical protein RUMHYD_02572 [Blautia hydrogenotrophica DSM
           10507]
          Length = 738

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           ++KI +  P   T  Q   +  I+Q+   K+R   ++ G  GSGKT V +  +   ++ G
Sbjct: 196 SEKIQKLPPAKLTGEQRKVLDGIIQEWEGKSRPC-LIHGVTGSGKTEVYMELIDRTLKQG 254

Query: 322 GQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+ P I +  Q    F  ++ +    ++ ++   + Q  R     R   G+  I++
Sbjct: 255 KQAIILIPEIALTYQTVMRFYGRFGE----VMSVLHSRLSQGERYDQFCRAKEGKIQIMV 310

Query: 381 GTH-ALFQDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTAT 429
           G   ALF     + KL L+++DE+H          R+  ++           HV++ +AT
Sbjct: 311 GPRSALF---TPFPKLGLIVIDEEHENTYKSEITPRYHAREAAIWRAWKEQAHVVMGSAT 367

Query: 430 P 430
           P
Sbjct: 368 P 368


>gi|152978208|ref|YP_001343837.1| primosome assembly protein PriA [Actinobacillus succinogenes 130Z]
 gi|150839931|gb|ABR73902.1| primosomal protein N' [Actinobacillus succinogenes 130Z]
          Length = 746

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 158/388 (40%), Gaps = 92/388 (23%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   ++   Q +++ P IG+  Q     ++++     + ++++
Sbjct: 234 LLDGVTGSGKTEIYLQFIEETLKKNRQVLVLVPEIGLAPQT----VRRFRARFNVEIDVL 289

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
             N+  + R +   R  +GQ+ I+IGT  ALF     +  L  +++DE+H    +Q+   
Sbjct: 290 HSNLNDSQRLQVWRRAKNGQSAIVIGTRSALF---TPFRDLGAILLDEEHEASFKQQDGW 346

Query: 415 TQKATAPHVLLMTATPIPRTL-----VLTSLGDIDISKIT-----EKPAGRKPIKTVIIP 464
              A    V+      IP  L      L SL +++  K T     ++    K  ++ +I 
Sbjct: 347 RYHARDLAVVYAKQLDIPVVLGSATPSLESLHNVNQGKYTHIVLSQRAGQAKTAESQLID 406

Query: 465 IN--------------RIDEVIER-LKVVLSEGKKAY----------WI--CPQIEEKKE 497
           +               ++DE +++  +V+L   ++ +          W+  CP  ++   
Sbjct: 407 LKKQSVVNGLSGTLLRKMDEHLQKGNQVLLFLNRRGFAPVLLCHECGWMCCCPHCDKPFT 466

Query: 498 SNFRSVVERFN----------------SLH--------EHFTSSIA--IIHGRMSDIDKE 531
            + R  V R +                S H        E    ++     H  ++ ID++
Sbjct: 467 YHQRQRVMRCHHCASQRPIPMQCADCGSTHLITTGLGTEQLEQTLKERFPHYGITRIDRD 526

Query: 532 SV---------MDSFKNGTCKLLIATTVIEVG---IDV-------VDASIIIIENAEHFG 572
           S          +D  K G  ++LI T ++  G    DV       VD S+  ++      
Sbjct: 527 STARKGTLESHLDDIKQGKSRILIGTQMLAKGHHFPDVTLVALINVDGSLFSMDFRAEER 586

Query: 573 LAQLH-QLRGRVGRGEEISSCILLYHPP 599
           LAQL+ Q+ GR GR E+    +L  H P
Sbjct: 587 LAQLYVQVAGRAGRAEKPGEVLLQTHYP 614


>gi|67527053|gb|AAY68322.1| putative cold-shock dead-box protein A [uncultured marine bacterium
           66A03]
          Length = 659

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 134/333 (40%), Gaps = 59/333 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKTL   I++A  + A            A+I+AP   LA Q   E    Y +
Sbjct: 41  LVSAQTGSGKTLAFGISIATTLLAEKMEFDRPKIPLAIIIAPTRELALQVRKELEWLYVR 100

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVD 401
                   + G  P+A RR  LE      AHI++GT    +D I+   L L     V++D
Sbjct: 101 TKAQFASCVGGMDPRAERR-TLE----SGAHIVVGTPGRLRDHIERGVLRLSDIKAVVLD 155

Query: 402 EQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           E       G ++ L   L +       LL +AT +P  +V        ++K  +K + R 
Sbjct: 156 EADEMLDMGFREDLTFILGKAPVERRTLLFSAT-VPTQIV-------KLAKTYQKDSVRI 207

Query: 457 PIKTV-------------IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
            + +              I P +R   VI  L+     G  A   C         N R+ 
Sbjct: 208 SVSSKKSQHLDISYHAIKIQPSDRDKAVINLLRYHDVSG--AIVFC---------NTRAA 256

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V    S   +   S+  + G +S  ++   + S + G   + +AT V   GID+ +  ++
Sbjct: 257 VTHLASRLTNRGFSVVALSGELSQKERNFALQSMRAGKANVCVATDVAARGIDLPNLELV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGR-GEEISSCILL 595
           I  +      A LH+  GR GR G +  S +L+
Sbjct: 317 IHADLPQSNEAMLHR-SGRTGRAGRKGVSVVLI 348


>gi|270284872|ref|ZP_06194266.1| SNF2 family helicase [Chlamydia muridarum Nigg]
 gi|270288900|ref|ZP_06195202.1| SNF2 family helicase [Chlamydia muridarum Weiss]
          Length = 1163

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAA--VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL  +IA+  +   + GG ++I+ P  ++     EF K   +   ++++ 
Sbjct: 721 ILADDMGLGKTLQTIIAVTQSRLEKGGGCSLIICPTSLVYNWKEEFRKFNPEFKTLVIDG 780

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL---VIVDEQHRFGVQQR 411
           I      + RRK L  +   +  + I ++ L Q  I  YK  L   V++DE H   ++ R
Sbjct: 781 IP-----SQRRKQLSSLE--EYDVAITSYNLLQKDIDIYKDFLFDYVVLDEAHH--IKNR 831

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL-VLTSLGDI 443
                K+     A H L++T TPI  +L  L SL D 
Sbjct: 832 TTRNAKSVKMIRACHRLILTGTPIENSLEELWSLFDF 868


>gi|53716164|ref|YP_106468.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei ATCC 23344]
 gi|67639524|ref|ZP_00438373.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|254203477|ref|ZP_04909838.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei FMH]
 gi|254205355|ref|ZP_04911708.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei JHU]
 gi|52422134|gb|AAU45704.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei ATCC 23344]
 gi|147745716|gb|EDK52795.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei FMH]
 gi|147754941|gb|EDK62005.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei JHU]
 gi|238520075|gb|EEP83538.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei GB8 horse 4]
          Length = 465

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 136/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + I++  +  + + V
Sbjct: 49  IAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKV 108

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHII+GT     D +    L L     +++DE  R  
Sbjct: 109 LTLCGGTPMRPQTQSLE---HG-AHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRML 164

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K      +     P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 165 DMGFFDDIAK------VARQCPPTRQTLLFSATYPDGIAKLSQQFL-RHP-KRVKLEERH 216

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 217 DDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 276

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 277 -HGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVYVHRI- 334

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 335 GRTGRADQ 342


>gi|320166262|gb|EFW43161.1| ATP dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 633

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 119/258 (46%), Gaps = 27/258 (10%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++AP   LA Q YE  +K++  + I   ++ G      + + +ER       +++ T
Sbjct: 259 EALVLAPTRELAVQIYEEARKFSYRSGIRACVVYGGTDIGQQLRDIER----GCQLLVAT 314

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLK-LTQKATAPHV----LLMTAT 429
                D ++  K+ L     V++DE  R    G + +++ + +K   P +    +LM + 
Sbjct: 315 PGRLMDLLERGKISLDNCRYVVLDEADRMLDMGFEPQIREIVEKNDLPAMGERQMLMFSA 374

Query: 430 PIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
             P+    L    L D     +    +  + I   +I ++  D+    L ++ + G +  
Sbjct: 375 TFPKEIQALARDFLEDYLFLAVGRVGSTSENITQKLIWVDEHDKRSMLLDLLSAAGPECL 434

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +C  +E K+ ++    +E F   HE F +  A IHG  S  ++E  + +F++G   +L+
Sbjct: 435 TLC-FVETKRAAD---SLEDF-LYHEGFPA--ASIHGDRSQREREDALRTFRSGHTPILV 487

Query: 547 ATTVIEVGIDVVDASIII 564
           AT V   G+D+ +   +I
Sbjct: 488 ATAVAARGLDIPNVKHVI 505


>gi|282850136|ref|ZP_06259515.1| primosomal protein N' [Veillonella parvula ATCC 17745]
 gi|282579629|gb|EFB85033.1| primosomal protein N' [Veillonella parvula ATCC 17745]
          Length = 727

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 19/174 (10%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           NIP   T++Q++    I   M+       +L G  GSGKT + L A A  +     A+I+
Sbjct: 196 NIPL--TEAQQAVYGPIQDAMNSHEHKTFLLHGVTGSGKTQLYLRATARCISQDKTAIIL 253

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALF 386
            P  IL  Q    +K++ +     V +    +    R    ER+    +HIIIG   A+F
Sbjct: 254 VPEIILTDQ---IVKRFVETFGDEVVVFHSKLTVQQRNNNWERLRRKDSHIIIGARSAVF 310

Query: 387 QDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP 430
             +     + L++VDE+H          R+  +       +A    V+L +ATP
Sbjct: 311 APA---EDIGLIVVDEEHDPSYKQEDMVRYHARNVALWRAEAHGCPVILGSATP 361


>gi|108742054|gb|AAI17661.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 132/331 (39%), Gaps = 57/331 (17%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +    Y ++++I   
Sbjct: 141 TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKST 200

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 201 CVYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLD 256

Query: 407 -GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KITE 450
            G + +++            L   AT P  +   A    +  V  ++G +++S    I +
Sbjct: 257 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQ 316

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
                  I  V +   + +++I+ ++ +++E           +E K   F    +R + L
Sbjct: 317 -------IVDVCMENEKDNKLIQLMEEIMAE-----------KENKTIIFVETKKRCDEL 358

Query: 511 HEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                        IHG  S  +++ V+  F++G   +LIAT V   G+DV D   +I  +
Sbjct: 359 TRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYD 418

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             +     +H++ GR  R     +    + P
Sbjct: 419 YPNSSEDYVHRI-GRTARSTNKGTAYTFFTP 448


>gi|329943180|ref|ZP_08291954.1| primosomal protein N' [Chlamydophila psittaci Cal10]
 gi|332287762|ref|YP_004422663.1| putative primosome assembly protein [Chlamydophila psittaci 6BC]
 gi|313848334|emb|CBY17337.1| putative primosomal replication factor [Chlamydophila psittaci RD1]
 gi|325507212|gb|ADZ18850.1| putative primosome assembly protein [Chlamydophila psittaci 6BC]
 gi|328814727|gb|EGF84717.1| primosomal protein N' [Chlamydophila psittaci Cal10]
 gi|328915018|gb|AEB55851.1| primosomal protein N` [Chlamydophila psittaci 6BC]
          Length = 749

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 16/201 (7%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+ A+  I   +S       ++ G  GSGKT V   A+  A + G  A+++ P   L  Q
Sbjct: 214 QQDAVDKISSSLSSGKFQTHLIFGVTGSGKTEVYFQAIREARKLGKSAILLVPEIALTIQ 273

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
                K +       V I+   +  + R K     ++G  HIIIG  +     +Q   L 
Sbjct: 274 TVTLFKAHFGKE---VGILHHKLNDSDRNKTWREASNGNIHIIIGPRSALFCPLQ--NLG 328

Query: 397 LVIVDEQHRFGVQQRLK-----------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           L+IVDE+H    +Q              +  K     V+L +ATP   +      G   +
Sbjct: 329 LIIVDEEHDPAYKQSESHPCYHARDVAVMRGKLANATVVLGSATPSLESYAHALSGKYIL 388

Query: 446 SKITEKPAGRKPIKTVIIPIN 466
           S+++ + A   P K  +I +N
Sbjct: 389 SELSSRAAAAYPAKVSLIDMN 409


>gi|145591769|ref|YP_001153771.1| DEAD/DEAH box helicase domain-containing protein [Pyrobaculum
           arsenaticum DSM 13514]
 gi|145283537|gb|ABP51119.1| DEAD/DEAH box helicase domain protein [Pyrobaculum arsenaticum DSM
           13514]
          Length = 928

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 154/360 (42%), Gaps = 77/360 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------EAGGQAVI 326
           PT+ Q  AI +IL+     N +L I     GSGKT  A++ + + +       AG   + 
Sbjct: 22  PTEPQAKAIPEILEG----NNVLII--APTGSGKTEAAMLPILSKMLEQGTENAGIYVLY 75

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P+  L +   + I+ + +     V++  G+  +A R    +R +    HI+I T  + 
Sbjct: 76  ITPLRALNRDLLDRIRWWGERLGFRVDVRHGDTDKADR----QRQSKTPPHILITTPEML 131

Query: 387 QDSIQYYKLI-------LVIVDEQHRFGVQQR---LKLTQKATAPHV------LLMTAT- 429
           Q  +   +L+        V+VDE H     +R   L L  +    HV      + ++AT 
Sbjct: 132 QAVMTGRRLLGHLKEVRWVVVDEVHELAEDKRGVQLSLALERLRYHVGRDFQIVGLSATV 191

Query: 430 --PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVI-----ERLKVVL 479
             P+     L  +G              +P K V++ + R   +D V      E +K+  
Sbjct: 192 GSPVEVAKFLMGVG--------------RPFKIVMVNVVRNMQLDVVRPWPSEEDVKLAE 237

Query: 480 SEG------KKAYWICPQIEEKKES----NFRSVVE----RFNSLHEHFTSSIAIIHGRM 525
           S G       +   I   +EE + +    N RS+ E    R + L       +A+ H  +
Sbjct: 238 SSGLFPDVVARLRLIKKLVEENRSTLIFVNTRSMAELLGFRLSYLFPDL--PVAVHHSSL 295

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S + + SV +  K G  K ++AT+ +E+GID+    ++I   + H    Q+ +L  RVGR
Sbjct: 296 SKMVRVSVEERLKKGDLKAVVATSSLELGIDIGHIDLVIQYISPH----QVTRLLQRVGR 351


>gi|304382904|ref|ZP_07365386.1| ATP-dependent RNA helicase [Prevotella marshii DSM 16973]
 gi|304335929|gb|EFM02177.1| ATP-dependent RNA helicase [Prevotella marshii DSM 16973]
          Length = 439

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 127/319 (39%), Gaps = 44/319 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKTL  L+ +   ++      QA+++ P   LA Q    ++  +  T++      G 
Sbjct: 39  TGSGKTLAYLLPLVQMIDEDKESVQAIVLVPGRELALQSVNVLQ--SMGTRLRAMSCYGG 96

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE-----QHRFGV 408
            P     + +++I      I+  T     D I+     +     V++DE     +  F  
Sbjct: 97  RPTMDEHRLMKKI---NPQILFCTPGRLNDHIEKGNFSINTVKWVVIDEFDKCLEMGFRD 153

Query: 409 QQRLKLTQKATAPHVLLMTATP---IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           +    L +   A   +L++AT    IP  + +     I+    TE    R  +  V  P 
Sbjct: 154 EMSAVLNRLVDADRHILLSATDAAEIPHFVNINKTNRINYLDHTEMIPDRVSLFEVRSPD 213

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS-LHEH--FTSSIAIIH 522
               E + RL   L       ++          N+R  VER +  L EH  +TSS    H
Sbjct: 214 KDKLETLNRLLCCLGSESTIIFL----------NYRESVERTDRYLREHGFYTSSF---H 260

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ---LHQL 579
           G M    +E  +  F NG+  + ++T +   G+D+ D + II     H  +A+   +H++
Sbjct: 261 GGMEQKAREDALYKFANGSANIFVSTDLASRGLDIPDVNNII---HYHLPIAEENYIHRV 317

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR  R E       +  P
Sbjct: 318 -GRTARWEASGRSFFILSP 335


>gi|300120970|emb|CBK21212.2| unnamed protein product [Blastocystis hominis]
          Length = 617

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 130/314 (41%), Gaps = 51/314 (16%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     + A        G   ++++P   LA Q  E   ++  ++ I   
Sbjct: 238 TGSGKTLAFILPAIIHIRAQPMLRPGDGPICLVLSPTRELANQTQEECARFGTSSGIRNT 297

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF-- 406
            + G +P+  +   L R     A I+I T     D ++       ++  +++DE  R   
Sbjct: 298 CVYGGVPRRQQAYDLRR----GAEIVIATPGRLLDFLESGVTNLRRVTYLVMDEADRMLD 353

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A       +  ++G +D+ K+T+   
Sbjct: 354 MGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQALARDFLTNPIQVNIGSLDL-KVTDH-- 410

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER--FNSLH 511
               +K VI  +    ++ E LK++ S+  ++  I     ++       ++ +  FN+L 
Sbjct: 411 ----VKQVIKCVTEGQKLDETLKILRSKNPESRCIIFTQSKRGADELTRILRQRGFNAL- 465

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                    IHG     +++ V+  FK+G   +++AT V   G+DV D  ++I  +    
Sbjct: 466 --------AIHGDKEQRERDFVLHEFKSGRVTIMVATDVASRGLDVKDIRVVINYDFPSC 517

Query: 572 GLAQLHQLRGRVGR 585
               +H++ GR GR
Sbjct: 518 VEDYIHRV-GRAGR 530


>gi|284044842|ref|YP_003395182.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283949063|gb|ADB51807.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 590

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 142/347 (40%), Gaps = 41/347 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV-----IM 327
           PT  Q  AI  +L+      R L + Q   G+GKT    + +   +E G  A+     ++
Sbjct: 38  PTPIQREAIPPLLE-----GRDL-LGQAATGTGKTAAFALPILQRMEPGRSAIGPLALVL 91

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA--- 384
            P   LA Q  E + +Y ++    V  I G  P   +  AL+R       +++GT     
Sbjct: 92  VPTRELAVQVSEALHRYGRSLGARVLPIYGGQPIGRQLNALKR----GVDVVVGTPGRVL 147

Query: 385 --LFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKAT---APHVLLMTATPIPR--T 434
             + +++++  +L +V++DE       G  + ++     T       +L +AT  PR   
Sbjct: 148 DHISRNTLRLDELRIVVLDEADEMLDMGFAEDIESILAETPDGGRQTVLFSATMPPRIDR 207

Query: 435 LVLTSLGD-IDISKITEKPAGRKP-IKTVIIPINRIDEVIERLKVVLSEGKKAYWI-CPQ 491
           +    L D + I    E  AG  P ++     + R  +     +V+  E   A  + C  
Sbjct: 208 IARAHLSDPVRIEIARETSAGDTPLVRQSAYVVARAHKPAALGRVLDVESPTAAIVFC-- 265

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    R  V++              +HG M+   ++ VM   +NGT  LL+AT V 
Sbjct: 266 -------RTRDEVDQLTETLNGRGYRAEALHGGMTQEQRDRVMARLRNGTADLLVATDVA 318

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             G+DV   + ++  +      + +H++ GRVGR     + I L  P
Sbjct: 319 ARGLDVEQLTHVVNYDVPSSPESYVHRI-GRVGRAGREGAAITLAEP 364


>gi|316934368|ref|YP_004109350.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315602082|gb|ADU44617.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 469

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 142/362 (39%), Gaps = 58/362 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           SPT  Q+ AI  +L     +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 23  SPTPIQQQAIPHVLA----RRDVLGIAQ--TGTGKTAAFVLPMLTLLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLT 438
             D  +   L+L     +++DE  R        +      P +  +    P  R TL  T
Sbjct: 133 LLDHTERGGLLLTGVEMLVIDEADR--------MLDMGFIPDIERICKLVPFTRQTLFFT 184

Query: 439 SLGDIDISKITE-------KPAGRKPIKTVI------IPINRID----EVIERLKVVLSE 481
           +    +I +ITE       K    KP  T +      +P  R      E +  L    ++
Sbjct: 185 ATMPTEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRHLIRGATD 244

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            K A   C        +  R V     SL  H   S+  +HG M    + + +++F+ G 
Sbjct: 245 LKNAIIFC--------NRKREVALLARSLQRH-GFSVGALHGDMDQTARMAALEAFRKGE 295

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+A+ V   G+D+ + S +   +  H     +H++ GR GR     + + +  P   
Sbjct: 296 LPILVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRI-GRTGRAGRAGTALTIVAPSDQ 354

Query: 602 KN 603
           K+
Sbjct: 355 KS 356


>gi|241563473|ref|XP_002401718.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215501910|gb|EEC11404.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 371

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 137/313 (43%), Gaps = 33/313 (10%)

Query: 302 VGSGKTLVALIAMAAA-VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGKTL  L+ +  + ++    A+I+ P   LA Q +  + K T   +I   ++ G  P
Sbjct: 45  TGSGKTLAYLLPLIDSFIKNKTTALILVPTRELATQIHSTLNKVTTPYKINSAVLIGGEP 104

Query: 361 QAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRL 412
              +   L++       +IIGT       L + S++  ++ + ++DE  R    G++++L
Sbjct: 105 MPKQFMQLKK----NPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQL 160

Query: 413 KLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +   K       VL+ +AT +P+ ++  S   ++            P++  +   N+   
Sbjct: 161 EGINKFLPEKRQVLMFSAT-MPKHIIALSQKYLN-----------NPVRITVGATNKAAA 208

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRM 525
            I++  + +S+ +K   +  Q+  ++ S       +   ++   + ++       IHG +
Sbjct: 209 EIKQESLHISDKEKFSELTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDL 268

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S   +E V+ SF+    ++++AT V   G+D+     +I  +        LH++ GR GR
Sbjct: 269 SQHQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRI-GRTGR 327

Query: 586 GEEISSCILLYHP 598
                  +    P
Sbjct: 328 AGATGYALSFISP 340


>gi|169825879|ref|YP_001696037.1| RNA helicase-like protein [Lysinibacillus sphaericus C3-41]
 gi|168990367|gb|ACA37907.1| RNA helicase-like protein [Lysinibacillus sphaericus C3-41]
          Length = 382

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 144/335 (42%), Gaps = 44/335 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKTL  ++ +   V       Q +I+AP   LA Q  E I+++T  T I V+
Sbjct: 38  VAESPTGSGKTLAYVLPLLNKVNGAKKQTQGLIVAPSQELAMQIVEVIREWTAGTDITVQ 97

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE-----Q 403
            + G    A + + L++    +  I++GT     +  +  KL L     V++DE      
Sbjct: 98  QLIGGANSARQIEKLKK----KPTIVVGTPGRLNELARAGKLKLKEIETVVLDECDQLLS 153

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             + V  +  +   A    V++++AT      ++ S    +  +   KP     +  V  
Sbjct: 154 REYRVVIKSFIEGSAFGRQVVVVSATITEEIELVASRMMFEPVRFKIKPEDMLKVGKVTH 213

Query: 464 PINRIDE-----VIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVVERFNSLHEHFTS 516
              +++E      + RL    +EG +A      I++   KE+             ++ ++
Sbjct: 214 SFVKVEERDKTEFLRRLS--HTEGLRALAFVNNIDQLLMKETKL-----------QYRSA 260

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I  +H  M   +++  +D+F+ G  ++LIAT +   G+D+   + +I  +        L
Sbjct: 261 PIVTLHSDMKKEERKKALDAFRKGDARILIATDIAARGLDIAGLTHVIHVDVPRTIEQYL 320

Query: 577 HQLRGRVGR----GEEISSCILLYHPPLSKNSYTR 607
           H+  GR GR    GE ++  +L Y    +   +TR
Sbjct: 321 HR-SGRTGRAGADGEVLT--LLSYRDEKTYKKWTR 352


>gi|329115283|ref|ZP_08244038.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
 gi|326695726|gb|EGE47412.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
          Length = 488

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 150/355 (42%), Gaps = 62/355 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM--------AAAVEAGGQ 323
           +PT  QE +I  +LQ       +L + Q   G+GKT    + +         A      +
Sbjct: 72  TPTPIQERSIPYLLQGRD----LLGLAQ--TGTGKTASFALPILEHLIKNPRANTPKQPR 125

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHGQAH 377
            +++AP   L  Q  +  K Y ++ +    ++ G + Q  + +A+ R       A G+  
Sbjct: 126 VLVLAPTRELVAQISDSFKAYARHMKFTQAVVFGGVGQGRQVEAMRRGVDVLVAAPGRLL 185

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIP 432
            ++G     Q  I    L ++++DE  R     F    R  +T        LL +AT +P
Sbjct: 186 DLMG-----QGFIDLSGLEILVLDEADRMLDMGFVRDIRRIMTFVPEQRQTLLFSAT-MP 239

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKT-VIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           R     S+ D+  S + +      P +  V  P + +D + + +  V   G K   +   
Sbjct: 240 R-----SIEDLAASLLND------PARVEVAPPSSTVDRIQQAVMFVNGAGDKRDALLNM 288

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIA-----------IIHGRMSDIDKESVMDSFKNG 540
           +E  K S  R+VV    +L +H  + +A            IHG  S   +E  M  F++G
Sbjct: 289 VESPKVS--RAVV---FTLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGFRSG 343

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL--RGRVGR-GEEISSC 592
           + K+L+AT +   GIDV D S +   +  +   + +H++    R GR G  +S C
Sbjct: 344 SVKVLVATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSFC 398


>gi|312219930|emb|CBX99872.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1226

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 140/343 (40%), Gaps = 58/343 (16%)

Query: 301  DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            + GSGKTL   +     + A        G   +I+AP   LA Q  + I K+ ++++I  
Sbjct: 862  ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRN 921

Query: 353  EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
              + G +P+  + + L R       + I T     D ++  K  L     +++DE  R  
Sbjct: 922  TCVYGGVPKGPQIRDLAR----GVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRML 977

Query: 407  --GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              G +             R      AT P  +   A+      +  +LG +D+S      
Sbjct: 978  DMGFEPQIRKIIGQIRPDRQTCMWSATWPKEVRQLASDYQNDWIQVNLGSMDLSAH---- 1033

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
                         +RI +++E L+ ++S+ +    I    +   +      + RF  L +
Sbjct: 1034 -------------HRIQQIVEHLETIMSDKENKILIFTGTKRVADE-----ITRF--LRQ 1073

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                +++I HG     +++ V++ FK G   +++AT V   GIDV + + +   +  +  
Sbjct: 1074 DGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNS 1132

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
               +H++ GR GR     + I L+    SK +   + +L  ++
Sbjct: 1133 EDYVHRI-GRTGRAGANGTAITLFTTENSKQARDLVQILTESK 1174


>gi|239615016|gb|EEQ92003.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis ER-3]
 gi|327357154|gb|EGE86011.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 548

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 147/346 (42%), Gaps = 50/346 (14%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +++AP   LA Q    I K+ ++++I  
Sbjct: 175 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRN 234

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR-- 405
             + G +P+  + + L R       + I T     D ++       ++  +++DE  R  
Sbjct: 235 TCVYGGVPKGPQIRDLTR----GVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRML 290

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
              F  Q R  ++Q           AT P  +   A       +  ++G +D+S   +IT
Sbjct: 291 DMGFEPQIRKIVSQIRPDRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRIT 350

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +       I  ++    + D + + L  ++ E K A  +     ++   +    + RF  
Sbjct: 351 Q-------IVEIVSEFEKRDRMAKHLDRIMEENKNAKVLIFTGTKRVADD----ITRF-- 397

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D + ++  +  
Sbjct: 398 LRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYP 456

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +     +H++ GR GR     + I L+    +K +   +S+L  ++
Sbjct: 457 NNSEDYVHRI-GRTGRAGAKGTAITLFTTDNAKQARDLVSILTESK 501


>gi|187779628|ref|ZP_02996101.1| hypothetical protein CLOSPO_03224 [Clostridium sporogenes ATCC
           15579]
 gi|187773253|gb|EDU37055.1| hypothetical protein CLOSPO_03224 [Clostridium sporogenes ATCC
           15579]
          Length = 421

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 162/343 (47%), Gaps = 46/343 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT+ QE  I      ++ +N+ + I Q + G+GKTL  L+ +   +       QA+I+AP
Sbjct: 26  PTEIQEKTI-----PLAMENKDI-IGQSETGTGKTLAYLLPIFKKINTEKREMQAIILAP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q    IK  + N+ + V+ +   + +A+ ++ +E++   + HII+G+     + 
Sbjct: 80  THELAMQINNEIKNISSNSNMDVKSM-AIIGEANIKRQIEKLKE-KPHIIVGSPGRILEL 137

Query: 390 IQYYKLI-----LVIVDEQHRFGVQQRLKLTQ---KAT--APHVLLMTATPIPRTLVLTS 439
           I+  K+       +++DE  +   +  LK+ +   KAT     ++L +AT    TL +  
Sbjct: 138 IKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKDVIKATLRERQLMLFSATITESTLNIAK 197

Query: 440 --LGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKVVLSEGKKAYWICPQIEE 494
             + +  I K+ EK    + IK + I      RI E++ +L +  +  K+A     + EE
Sbjct: 198 DLMKEPQIVKVKEKNTVNENIKHLYITGEHRERI-EILRKL-IAATNPKRAIVFINRNEE 255

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            + +  +        L  H   +  I +G      ++  ++ F+ G  ++L+++ +   G
Sbjct: 256 IELTTLK--------LQYHKIKAYGI-YGAAEKEQRKKALEDFRLGKIQILVSSDLSARG 306

Query: 555 IDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +DV D + I    + EN + +    LH++ GR GR  +  + I
Sbjct: 307 LDVKDVTHIFNLDLPENPKEY----LHRV-GRTGRASKEGTAI 344


>gi|168180351|ref|ZP_02615015.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|168185059|ref|ZP_02619723.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|226949022|ref|YP_002804113.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum A2 str. Kyoto]
 gi|237795189|ref|YP_002862741.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum Ba4 str. 657]
 gi|182668710|gb|EDT80688.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|182671890|gb|EDT83851.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|226842744|gb|ACO85410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
 gi|229262468|gb|ACQ53501.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
          Length = 421

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 159/336 (47%), Gaps = 46/336 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT+ Q  AI      ++ +N+ + I Q + G+GKTL  L+ +   +       QA+I+AP
Sbjct: 26  PTEIQAKAI-----PLAMENKDI-IGQSETGTGKTLAYLLPIFEKITTEKREMQAIILAP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q    IK  + N+ + V+ +   + +A+ ++ +E++   + HII+G+     + 
Sbjct: 80  THELAMQINNEIKNISSNSNMDVKSM-AIIGEANIKRQIEKLKE-KPHIIVGSPGRILEL 137

Query: 390 IQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTATPIPRTLVLTS 439
           I+  K+       +++DE  +   +  LK+ ++          ++L +AT    TL +  
Sbjct: 138 IKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLMLFSATITESTLNIAK 197

Query: 440 --LGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKVVLSEGKKAYWICPQIEE 494
             + D ++ K+ EK    + IK + I      RI E++ +L +  +  K+A     + EE
Sbjct: 198 DLMKDSEVVKVKEKNTVNENIKHLYITGEHRERI-EILRKL-IAATNPKRAIVFINRNEE 255

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            + +  +        L  H   +  I +G      ++  ++ F++G  ++L+++ +   G
Sbjct: 256 IELTTLK--------LQYHKIKAYGI-YGAAEKEQRKKALEDFRSGKVQILVSSDLSARG 306

Query: 555 IDVVDASII----IIENAEHFGLAQLHQLRGRVGRG 586
           +DV D + I    + EN + +    LH++ GR GR 
Sbjct: 307 LDVKDITHIFNLDLPENPKEY----LHRV-GRTGRA 337


>gi|221307593|ref|NP_001138306.1| probable ATP-dependent RNA helicase DDX5 [Pan troglodytes]
 gi|156630859|sp|A5A6J2|DDX5_PANTR RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|146741418|dbj|BAF62365.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Pan troglodytes verus]
          Length = 614

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 135/344 (39%), Gaps = 55/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 140 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKST 199

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER         I T     D ++  K  L     +++DE  R   
Sbjct: 200 CIYGGAPKGPQIRDLERGVEN----CIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    +  +  ++G +++S      A
Sbjct: 256 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------A 309

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++ V +   + + +++I  ++ ++SE           +E K   F     R + L 
Sbjct: 310 NHNILQIVDVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELT 358

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  + 
Sbjct: 359 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 418

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 419 PNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 461


>gi|146318079|ref|YP_001197791.1| primosome assembly protein PriA [Streptococcus suis 05ZYH33]
 gi|146320258|ref|YP_001199969.1| primosome assembly protein PriA [Streptococcus suis 98HAH33]
 gi|145688885|gb|ABP89391.1| Primosomal protein N' (replication factor Y) - superfamily II
           helicase [Streptococcus suis 05ZYH33]
 gi|145691064|gb|ABP91569.1| Primosomal protein N' (replication factor Y) - superfamily II
           helicase [Streptococcus suis 98HAH33]
 gi|292557841|gb|ADE30842.1| Primosomal protein N [Streptococcus suis GZ1]
          Length = 812

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 30/207 (14%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q  A+++I+  + Q+++   +LQG  GSGKT V L  +   ++ G  A+++ P I +  Q
Sbjct: 280 QAIAVREIVASIGQESQTF-LLQGVTGSGKTEVYLQVIDRVLKMGKTAIMLVPEISLTPQ 338

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               FI ++ Q     V I+   +    +     +I  G A +++G   A+F        
Sbjct: 339 MTNRFISRFGQQ----VAILHSGLSDGEKYDEWRKIEAGNAQVVVGARSAIF---APLTN 391

Query: 395 LILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L ++I+DE+H          R+  +   KL        ++L +ATP   T    S G   
Sbjct: 392 LGVIIIDEEHEATYKQDSNPRYHARDVAKLRADYNRATLVLGSATPSLETRARASRG--- 448

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEV 471
                    GR  +     P+ RI EV
Sbjct: 449 -------VYGRLTLNQRANPLARIPEV 468


>gi|141796059|gb|AAI34864.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 132/331 (39%), Gaps = 57/331 (17%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +    Y ++++I   
Sbjct: 141 TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKST 200

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 201 CVYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLD 256

Query: 407 -GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KITE 450
            G + +++            L   AT P  +   A    +  V  ++G +++S    I +
Sbjct: 257 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQ 316

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
                  I  V +   + +++I+ ++ +++E           +E K   F    +R + L
Sbjct: 317 -------IVDVCMENEKDNKLIQLMEEIMAE-----------KENKTIIFVETKKRCDEL 358

Query: 511 HEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                        IHG  S  +++ V+  F++G   +LIAT V   G+DV D   +I  +
Sbjct: 359 TRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYD 418

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             +     +H++ GR  R     +    + P
Sbjct: 419 YPNSSEDYVHRI-GRTARSTNKGTAYTFFTP 448


>gi|22124216|ref|NP_667639.1| primosome assembly protein PriA [Yersinia pestis KIM 10]
 gi|45439974|ref|NP_991513.1| primosome assembly protein PriA [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108806257|ref|YP_650173.1| primosome assembly protein PriA [Yersinia pestis Antiqua]
 gi|108813904|ref|YP_649671.1| primosome assembly protein PriA [Yersinia pestis Nepal516]
 gi|145601039|ref|YP_001165115.1| primosome assembly protein PriA [Yersinia pestis Pestoides F]
 gi|150260796|ref|ZP_01917524.1| primosomal protein n' [Yersinia pestis CA88-4125]
 gi|165928409|ref|ZP_02224241.1| primosomal protein n' [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936178|ref|ZP_02224747.1| primosomal protein n' [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011502|ref|ZP_02232400.1| primosomal protein n' [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213722|ref|ZP_02239757.1| primosomal protein n' [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167402502|ref|ZP_02307956.1| primosomal protein n' [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167418787|ref|ZP_02310540.1| primosomal protein n' [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425954|ref|ZP_02317707.1| primosomal protein n' [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167469790|ref|ZP_02334494.1| primosome assembly protein PriA [Yersinia pestis FV-1]
 gi|218927324|ref|YP_002345199.1| primosome assembly protein PriA [Yersinia pestis CO92]
 gi|229836223|ref|ZP_04456391.1| Primosome factor n' (replication factor Y) [Yersinia pestis
           Pestoides A]
 gi|229839962|ref|ZP_04460121.1| Primosome factor n' (replication factor Y) [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842044|ref|ZP_04462199.1| Primosome factor n' (replication factor Y) [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904430|ref|ZP_04519541.1| Primosome factor n' (replication factor Y) [Yersinia pestis
           Nepal516]
 gi|270488708|ref|ZP_06205782.1| primosomal protein N' [Yersinia pestis KIM D27]
 gi|294502205|ref|YP_003566267.1| primosome assembly protein PriA [Yersinia pestis Z176003]
 gi|21956978|gb|AAM83890.1|AE013629_1 primosomal protein N' [Yersinia pestis KIM 10]
 gi|45434829|gb|AAS60390.1| primosomal protein n' [Yersinia pestis biovar Microtus str. 91001]
 gi|108777552|gb|ABG20071.1| replication restart DNA helicase PriA [Yersinia pestis Nepal516]
 gi|108778170|gb|ABG12228.1| replication restart DNA helicase PriA [Yersinia pestis Antiqua]
 gi|115345935|emb|CAL18797.1| primosomal protein n' [Yersinia pestis CO92]
 gi|145212735|gb|ABP42142.1| replication restart DNA helicase PriA [Yersinia pestis Pestoides F]
 gi|149290204|gb|EDM40281.1| primosomal protein n' [Yersinia pestis CA88-4125]
 gi|165915792|gb|EDR34400.1| primosomal protein n' [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165919591|gb|EDR36924.1| primosomal protein n' [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989648|gb|EDR41949.1| primosomal protein n' [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205124|gb|EDR49604.1| primosomal protein n' [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962781|gb|EDR58802.1| primosomal protein n' [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167048118|gb|EDR59526.1| primosomal protein n' [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055102|gb|EDR64901.1| primosomal protein n' [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229678548|gb|EEO74653.1| Primosome factor n' (replication factor Y) [Yersinia pestis
           Nepal516]
 gi|229690354|gb|EEO82408.1| Primosome factor n' (replication factor Y) [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696328|gb|EEO86375.1| Primosome factor n' (replication factor Y) [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706671|gb|EEO92677.1| Primosome factor n' (replication factor Y) [Yersinia pestis
           Pestoides A]
 gi|262360284|gb|ACY57005.1| primosome assembly protein PriA [Yersinia pestis D106004]
 gi|262364231|gb|ACY60788.1| primosome assembly protein PriA [Yersinia pestis D182038]
 gi|270337212|gb|EFA47989.1| primosomal protein N' [Yersinia pestis KIM D27]
 gi|294352664|gb|ADE63005.1| primosome assembly protein PriA [Yersinia pestis Z176003]
 gi|320013462|gb|ADV97033.1| transcription-repair coupling factor [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 732

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 26/207 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+I+ P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENILAQGRQALILVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
              +  + R     R   G+A I+IGT  ALF     + +L ++I+DE+H          
Sbjct: 277 HSGLNDSERLSVWLRARSGEAAIVIGTRSALF---TPFSRLGVIIIDEEHDSSYKQQEGW 333

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP------- 457
           R+  +       +     +++ TATP   TL    +G      +T++    KP       
Sbjct: 334 RYHARDLAVFRAREEGIPIVMGTATPALETLHNVQMGKYRQLTLTKRAGSAKPAAQHLLD 393

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKK 484
           +K + + +     +++++K  L  G +
Sbjct: 394 LKGLPLKVGLSQPLLKQMKTHLQAGNQ 420


>gi|254482751|ref|ZP_05095989.1| primosomal protein N', putative [marine gamma proteobacterium
           HTCC2148]
 gi|214037110|gb|EEB77779.1| primosomal protein N', putative [marine gamma proteobacterium
           HTCC2148]
          Length = 729

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 19/146 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +A  +E G QA+++ P IG+  Q    F  ++       + ++
Sbjct: 219 LLEGVTGSGKTEVYLQLIADCLERGLQALVLIPEIGLTPQTLARFRDRFDAE----IAVL 274

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR---- 411
              +    R  A E    G AHI+IGT +    ++    LI  +VDE+H    +Q+    
Sbjct: 275 HSGLSDGQRYTAWEAARSGTAHIVIGTRSAVFAALARPGLI--VVDEEHDQSYKQQDGFR 332

Query: 412 -------LKLTQKATAPHVLLMTATP 430
                  +K  Q    P VLL +ATP
Sbjct: 333 YSARDVAVKRGQLENCP-VLLGSATP 357


>gi|148359886|ref|YP_001251093.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
 gi|296107936|ref|YP_003619637.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
           Alcoy]
 gi|148281659|gb|ABQ55747.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
 gi|295649838|gb|ADG25685.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
           Alcoy]
          Length = 589

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 150/360 (41%), Gaps = 55/360 (15%)

Query: 279 SAIKDILQDMS-------QKNRMLRILQG-------DVGSGKTLVALIAMAAAVE---AG 321
           SA+   L+DM        Q   +  ILQG         G+GKT    + +   +    + 
Sbjct: 15  SALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNLSPEIST 74

Query: 322 GQAVIMAP---IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            QA+I+AP   + I   + +E + KY +N  + + ++ G      + K L       A +
Sbjct: 75  TQALILAPTRELAIQVAEQFELLSKYQRN--VTIAVLCGGQEYGRQLKQL----RSGAQV 128

Query: 379 IIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTA 428
           ++GT     D I    L        IL   DE  R G  + ++  L +      + L +A
Sbjct: 129 VVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMALFSA 188

Query: 429 TPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEG 482
           T +P   R +  T L D    +I  + A  K I+   +  +   + D +I  L+V   +G
Sbjct: 189 T-MPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVEDYQG 247

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +        + +S+   V E    L +H   ++AI HG ++   +E ++  FK G  
Sbjct: 248 VIVFV-------RTKSSTEEVAE---LLQQHGLRAMAI-HGDITQSLRERIIAQFKQGAI 296

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+DV   + +I  +  H     +H++ GR GR       IL   P  S+
Sbjct: 297 DILVATDVAARGLDVERVTHVINYDMPHDNETYVHRI-GRTGRAGRSGVTILFVTPKESR 355


>gi|308807146|ref|XP_003080884.1| DEAD box protein P68 (ISS) [Ostreococcus tauri]
 gi|116059345|emb|CAL55052.1| DEAD box protein P68 (ISS) [Ostreococcus tauri]
          Length = 571

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 136/327 (41%), Gaps = 67/327 (20%)

Query: 301 DVGSGKTLVALIAM------AAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQII- 351
           + GSGKT    I M       A +  G    A++MAP   LAQQ     K +T++++   
Sbjct: 156 ETGSGKTAAFSIPMIQHALNQAPLRQGDGPFAIVMAPTRELAQQIETEAKTFTRSSKGFR 215

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF 406
             II G    + +R  L     G   I++ T     D +Q       ++  V++DE  R 
Sbjct: 216 TAIIVGGTNMSEQRSML----RGGVQIVVATPGRLIDHLQQGNTNLARVSFVVLDEADRM 271

Query: 407 ---GVQQRLK-LTQKATAPH-VLLMTAT---------------PIPRTLVLTSLGDIDIS 446
              G + +++ +      PH  LL +AT               P+   +  TS    ++S
Sbjct: 272 LDMGFEPQIREVLMNLPKPHQTLLFSATMPVEVEALAADYLNKPVKVKVGQTSAPTANVS 331

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ----IEEKKESNFRS 502
           +  EK          ++   ++D ++  L     E +K     P     +E K  ++   
Sbjct: 332 QQLEK----------VVDAEKVDRLVTMLISEQREAQKLGHSMPMTVVFVERKHRAD--E 379

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E  N+ +     S A +HG  S  ++E+ +  +K G C +L+AT V   G+DV   + 
Sbjct: 380 IAELLNAEN----VSAAALHGGRSQGEREAALHDYKTGRCSVLVATDVAARGLDVKGVAH 435

Query: 563 II----IENAEHFGLAQLHQLRGRVGR 585
           ++      N E +    +H++ GR GR
Sbjct: 436 VVNLDLPRNFEDY----VHRI-GRTGR 457


>gi|54307478|ref|YP_128498.1| primosome assembly protein PriA [Photobacterium profundum SS9]
 gi|46911898|emb|CAG18696.1| putative primosomal protein N` [Photobacterium profundum SS9]
          Length = 733

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 9/138 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L A+   + AG QA+I+ P IG+  Q     I ++ +   + +E +
Sbjct: 221 LLEGVTGSGKTEVYLNALEPILAAGKQALILVPEIGLTPQT----INRFRRRFNVPLETV 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              +    R  +       QA IIIGT  ALF     ++ L ++IVDE+H    +Q+  L
Sbjct: 277 HSGLNDTERLSSWLAGRDNQAGIIIGTRSALF---TPFHNLGIIIVDEEHDASYKQQDSL 333

Query: 415 TQKATAPHVLLMTATPIP 432
              A    V+      IP
Sbjct: 334 RYHARDLAVMRANKENIP 351


>gi|238798289|ref|ZP_04641773.1| Primosomal protein N' [Yersinia mollaretii ATCC 43969]
 gi|238717836|gb|EEQ09668.1| Primosomal protein N' [Yersinia mollaretii ATCC 43969]
          Length = 732

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENILAQGRQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
              +  + R     R  +G+A I+IGT  ALF     + +L ++I+DE+H          
Sbjct: 277 HSGLNDSERLSVWLRARNGEAAIVIGTRSALF---TPFSRLGVIIIDEEHDSSYKQQEGW 333

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           R+  +       +     +++ TATP   TL    +G      ++++    KP
Sbjct: 334 RYHARDLAVFRAREEGIPIVMGTATPALETLHNVQMGKYRQLTLSKRAGNAKP 386


>gi|53721181|ref|YP_110166.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei K96243]
 gi|121596589|ref|YP_990560.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei SAVP1]
 gi|126458103|ref|YP_001074245.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1106a]
 gi|162210105|ref|YP_336816.2| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1710b]
 gi|166999117|ref|ZP_02264963.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei PRL-20]
 gi|167722070|ref|ZP_02405306.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei DM98]
 gi|167741069|ref|ZP_02413843.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 14]
 gi|167818249|ref|ZP_02449929.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 91]
 gi|167826638|ref|ZP_02458109.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 9]
 gi|167848158|ref|ZP_02473666.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei B7210]
 gi|217422828|ref|ZP_03454330.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 576]
 gi|226198779|ref|ZP_03794343.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|242313771|ref|ZP_04812788.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1106b]
 gi|254182850|ref|ZP_04889443.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1655]
 gi|254189582|ref|ZP_04896092.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254264638|ref|ZP_04955503.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1710a]
 gi|254299641|ref|ZP_04967090.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei 406e]
 gi|52211595|emb|CAH37590.1| ATP-independent RNA helicase [Burkholderia pseudomallei K96243]
 gi|121224387|gb|ABM47918.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei SAVP1]
 gi|126231871|gb|ABN95284.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1106a]
 gi|157809522|gb|EDO86692.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei 406e]
 gi|157937260|gb|EDO92930.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184213384|gb|EDU10427.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1655]
 gi|217393736|gb|EEC33756.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 576]
 gi|225929219|gb|EEH25242.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|242137010|gb|EES23413.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1106b]
 gi|243064681|gb|EES46867.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei PRL-20]
 gi|254215640|gb|EET05025.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1710a]
          Length = 465

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 136/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + I++  +  + + V
Sbjct: 49  IAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKV 108

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHII+GT     D +    L L     +++DE  R  
Sbjct: 109 LTLCGGTPMRPQTQSLE---HG-AHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRML 164

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K      +     P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 165 DMGFFDDIAK------VARQCPPTRQTLLFSATYPDGIAKLSQQFL-RHP-KRVKLEERH 216

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 217 DDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 276

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 277 -HGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVYVHRI- 334

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 335 GRTGRADQ 342


>gi|260564054|ref|ZP_05834540.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260154070|gb|EEW89162.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
          Length = 510

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 162 RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 217

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 218 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 269

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 270 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------ATASEITQVVHPVPTKEK 317

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 318 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 377

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 378 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|268318337|ref|YP_003292056.1| DEAD/DEAH box helicase domain-containing protein [Rhodothermus
           marinus DSM 4252]
 gi|262335871|gb|ACY49668.1| DEAD/DEAH box helicase domain protein [Rhodothermus marinus DSM
           4252]
          Length = 505

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 136/326 (41%), Gaps = 42/326 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQ---HYEFIKKYTQNTQI 350
           I+Q   GSGKT   L+ +   ++      QA+I+ P   LA+Q    +E +K      Q 
Sbjct: 79  IVQSQTGSGKTGAFLLPLFERLDPSRGQVQALILTPTRELARQISEAFEQMKTGVSGAQS 138

Query: 351 IVEIIT-GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI--VD 401
           +  ++  G +    + KALE+     A ++IGT     D I+   L      +LV    D
Sbjct: 139 LRAVLVYGGVRYGPQLKALEQ----GAQVVIGTPGRILDLIERGALRLGALQVLVFDEAD 194

Query: 402 EQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           E    G    ++  ++      +  + +AT  PR   L         +  + PA      
Sbjct: 195 EMLSMGFYPAMRQLKRYLPRERNTAMFSATMPPRVQALAR-------EFLKDPA------ 241

Query: 460 TVIIPINRID-EVIERLKVVLSEGKKAYWICPQIE-EKKES-----NFRSVVERFNSLHE 512
            V +  +RI  E IE    ++   +K   +   IE E  ES     N +  VE      +
Sbjct: 242 FVSLSTDRIAAETIEHRYFIVPPMEKDRALVQLIELENPESAIIFANTKRDVEYLGQFLK 301

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           ++  +   I G +    +E +MD  + G  +LL+AT V   GID+ D S + + +     
Sbjct: 302 NYGYNADAITGDLPQKQRERIMDRLRKGQLRLLVATDVAARGIDISDLSHVFMYDVPQDP 361

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
              +H+  GR GR  +  + I+L  P
Sbjct: 362 EYYVHR-SGRTGRVGKEGTTIVLVTP 386


>gi|193212781|ref|YP_001998734.1| primosomal protein N' [Chlorobaculum parvum NCIB 8327]
 gi|193086258|gb|ACF11534.1| primosomal protein N' [Chlorobaculum parvum NCIB 8327]
          Length = 810

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 104/229 (45%), Gaps = 20/229 (8%)

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIH-NPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           P LPE  EK + +    P   EAF ++   P K    E +  +R       +L G + L 
Sbjct: 197 PTLPEEPEKLIARS---PRKREAFELLFAEPDKPLRAEESGISRA------VLNGLVELG 247

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L  K    EI  P+  EG    ++ + I  + ++ Q+ A+  +   + ++     +L G 
Sbjct: 248 LAEK---VEIAAPLK-EGLRFDEVQKEIT-ALSRHQQQALDALTGSLEEERFRTFLLHGV 302

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            GSGKTLV +  +   +++G  A+++ P   L  Q     + Y  +    ++II   M  
Sbjct: 303 TGSGKTLVYIELLRRVLDSGKTAIVLVPEIALTPQTAARFRHYFGDE---IQIIHSAMSD 359

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             + +A +R++ G+A I +G  +     ++    I  IVDE+H    +Q
Sbjct: 360 QEKYEAWQRLSTGKARIALGARSTLFAPLENVGAI--IVDEEHDGAYKQ 406


>gi|163759551|ref|ZP_02166636.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
 gi|162283148|gb|EDQ33434.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
          Length = 509

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 159/364 (43%), Gaps = 51/364 (14%)

Query: 261 IAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++QK+L  +      +PT  Q  AI   L+    +  +L I Q   G+GKT   ++ M  
Sbjct: 9   LSQKVLSAVTDAGYTTPTPIQAGAIPPALE----RRDILGIAQ--TGTGKTASFVLPMLT 62

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q +E  +KY +N ++ + ++ G +    + + LER
Sbjct: 63  MLERGRARARMPRTLILEPTRELAAQVHENFEKYGKNHRLNIVLLIGGVSFEEQYRKLER 122

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAPHV-L 424
                A ++I T     D  +  KL+     L+++DE  R        +      P +  
Sbjct: 123 ----GADVLIATPGRLLDHTERGKLLMTGVELLVIDEADR--------MLDMGFIPDIER 170

Query: 425 LMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           ++   P  R TL  ++    +I K+ +K   + P +  + P +     + + K+V   GK
Sbjct: 171 IVKLIPFTRQTLFFSATMPPEIQKLADKFL-QNPARIEVAPPSSTAATVTQ-KLVACSGK 228

Query: 484 ---KAYWICPQIEEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
              K   +   I  + +        +  + V + + SL +H   S+  +HG M    + +
Sbjct: 229 DFEKRERLRDLIRSQTDLTNAIIFCNRKKDVADLYKSLEKH-GFSVGALHGDMDQRSRTN 287

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISS 591
           ++  FK+    LL+A+ V   G+D+   S +   +        +H++ GR GR G E ++
Sbjct: 288 MLQGFKDNEITLLVASDVAARGLDIPAVSHVFNFDVPIHAEDYVHRI-GRTGRAGREGAA 346

Query: 592 CILL 595
             L+
Sbjct: 347 FTLV 350


>gi|54295187|ref|YP_127602.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
 gi|53755019|emb|CAH16507.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
          Length = 589

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 150/360 (41%), Gaps = 55/360 (15%)

Query: 279 SAIKDILQDMS-------QKNRMLRILQG-------DVGSGKTLVALIAMAAAVE---AG 321
           SA+   L+DM        Q   +  ILQG         G+GKT    + +   +    + 
Sbjct: 15  SALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNLSPEIST 74

Query: 322 GQAVIMAP---IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            QA+I+AP   + I   + +E + KY +N  + + ++ G      + K L       A +
Sbjct: 75  TQALILAPTRELAIQVAEQFELLSKYQRN--VTIAVLCGGQEYGRQLKQL----RSGAQV 128

Query: 379 IIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTA 428
           ++GT     D I    L        IL   DE  R G  + ++  L +      + L +A
Sbjct: 129 VVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMALFSA 188

Query: 429 TPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEG 482
           T +P   R +  T L D    +I  + A  K I+   +  +   + D +I  L+V   +G
Sbjct: 189 T-MPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVEDYQG 247

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +        + +S+   V E    L +H   ++AI HG ++   +E ++  FK G  
Sbjct: 248 VIVFV-------RTKSSTEEVAE---LLQQHGLRAMAI-HGDITQSLRERIIAQFKQGAI 296

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+DV   + +I  +  H     +H++ GR GR       IL   P  S+
Sbjct: 297 DILVATDVAARGLDVERVTHVINYDMPHDNETYVHRI-GRTGRAGRSGVTILFVTPKESR 355


>gi|32477939|ref|NP_870933.1| ATP-dependent DNA helicase RecQ [Rhodopirellula baltica SH 1]
 gi|32448496|emb|CAD78011.1| ATP-dependent DNA helicase RecQ [Rhodopirellula baltica SH 1]
          Length = 560

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 133/318 (41%), Gaps = 43/318 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK+L   +     +   G  ++++P+  LA+   E +KK  Q T ++    T    +
Sbjct: 115 TGAGKSLCYQLP---GILRDGVTLVVSPLISLAKDQAEHLKKAGQPTVVLNSTRTKKQIE 171

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQH---RFGVQQRL- 412
           + R K    IA G+   ++ T    Q +     +    + L++VDE H   ++G   R  
Sbjct: 172 SARSK----IAAGKVKFVLTTPERLQKTDICELLAGVGVGLMVVDEAHCVSQWGHDFRPD 227

Query: 413 -----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                 + ++   P +  +TAT   RTL      ++  S     P        V   I+R
Sbjct: 228 YLCLPSIRERLGNPPLAALTATASERTL-----DEVRCSLRLNDPT------IVRTGIDR 276

Query: 468 IDEVIERLKVVLSEGK-----KAYWICPQIEEKKES-NFRSVVERFNSLHEHFTSSIAII 521
            +  IE ++   +E K     +A  I   +E  + +  +    +  + L + F       
Sbjct: 277 PNLRIEVVRCYSAEDKLKQLHRALEIEGMLERTEPAIVYCGTTKTADQLAKSFGG--LCY 334

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG-LAQLHQLR 580
           HG+M   D+ +  + F NG   ++ AT    +GID  D   +I  + E  G L   +Q  
Sbjct: 335 HGKMRKADRAAAQEEFMNGRPSVMFATNAFGLGIDKHDLRQVI--HVELPGSLESYYQEM 392

Query: 581 GRVGRGEEISSCILLYHP 598
           GR GR  + S C LLY P
Sbjct: 393 GRAGRDGKRSRCTLLYDP 410


>gi|294793651|ref|ZP_06758788.1| primosomal protein N' [Veillonella sp. 3_1_44]
 gi|294455221|gb|EFG23593.1| primosomal protein N' [Veillonella sp. 3_1_44]
          Length = 727

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 19/174 (10%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           NIP   T++Q++    I   M+       +L G  GSGKT + L A A  +     A+I+
Sbjct: 196 NIPL--TEAQQAVYGPIQDAMNSHEHKTFLLHGVTGSGKTQLYLRATARCISQDKTAIIL 253

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALF 386
            P  IL  Q    +K++ +     V +    +    R    ER+    +HIIIG   A+F
Sbjct: 254 VPEIILTDQ---IVKRFVETFGDEVVVFHSKLTVQQRNNNWERLRRKDSHIIIGARSAVF 310

Query: 387 QDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP 430
             +     + L++VDE+H          R+  +       +A    V+L +ATP
Sbjct: 311 APA---EDIGLIVVDEEHDTSYKQEDMVRYHARNVALWRAEAHGCPVILGSATP 361


>gi|126733323|ref|ZP_01749070.1| primosomal protein N' [Roseobacter sp. CCS2]
 gi|126716189|gb|EBA13053.1| primosomal protein N' [Roseobacter sp. CCS2]
          Length = 730

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 33/223 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L+G  GSGKT V L A+A  +  G QA+++ P   L+    EFI +      +      
Sbjct: 220 LLKGVTGSGKTEVYLEAVAECLRMGRQALVLLPEIALSG---EFINRVEARFGMKPAEWH 276

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
             +    RR+    +  G A +I+G   ALF   + Y  L L++VDE+H    +Q   + 
Sbjct: 277 SGVTMTERRRCWRMVGQGDAQLIVGARSALF---LPYQNLGLIVVDEEHDTSYKQEDGVL 333

Query: 416 QKA----------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
             A              V+L +ATP      L S  +++  K        +    V+  +
Sbjct: 334 YNARDMAVLRAAINGAQVVLASATP-----SLESWANVEAGKYQRLELTARYGAAVMPKM 388

Query: 466 NRIDEVIERLKVVLSEGKKAYWICP----QIEEKKESNFRSVV 504
           N ID  +E L           W+ P     I+++ E   +S++
Sbjct: 389 NAIDMRVEDL-------PGGRWVSPTLRSAIQQRLEKGEQSLI 424


>gi|308807238|ref|XP_003080930.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
 gi|116059391|emb|CAL55098.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
          Length = 1025

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 132/317 (41%), Gaps = 24/317 (7%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            GSGKTL A   M      G + +++AP   LA Q     +K+         ++ G    
Sbjct: 99  TGSGKTL-AFHGMKK--HGGVEGLVVAPTRELAIQIQAECEKFGAERGFHSVVVYGGASA 155

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQD------SIQYYKLILVIVDEQHRF---GVQQRL 412
             ++ AL      +  I+IGT     D       +   KL ++++DE  R    G + ++
Sbjct: 156 YEQKNALR---SKKPCIVIGTPGRLTDLMSQEGVLSLEKLSVIVLDEADRMLDMGFEPQI 212

Query: 413 KLTQKAT--APHVLLMTATPIPRTL--VLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           K    AT  +   LL +AT  P+++  +     + D S++ E   G       +     I
Sbjct: 213 KTIFGATPASRQTLLFSAT-WPKSVRKLAACYLNQDKSRVREVFIGEGAQDGELAANKAI 271

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRM 525
            +     +    +      IC   ++ +   F +   R  +L + F++    +  +HG  
Sbjct: 272 TQRFVEARDHEKDEHLYNLICELPDDSRVVIFANTKRRVENLAKTFSAEGFGVVSVHGDK 331

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S  D+E+ +  F +  C L++AT V   G+D+   + +I  +      + +H++ GR GR
Sbjct: 332 SQADREASLRKFIDNKCPLMMATDVAARGLDIKGVTHVINYDMARDVESYVHRI-GRTGR 390

Query: 586 GEEISSCILLYHPPLSK 602
             E+ + +  ++    K
Sbjct: 391 AGELGAAVTFWNCDYDK 407


>gi|83859788|ref|ZP_00953308.1| hypothetical protein OA2633_07304 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852147|gb|EAP90001.1| hypothetical protein OA2633_07304 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 685

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 142/349 (40%), Gaps = 68/349 (19%)

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILA 334
           +L D +    +L   Q   GSGKT+   +AMA  + AG           A+I+AP   LA
Sbjct: 30  VLTDEADGRDLLVSAQ--TGSGKTVAFGMAMAGTLLAGEDRLPQAGAPLALIIAPTRELA 87

Query: 335 -QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            Q   E    Y +    +   + G  P+  RR ALER     AHI++GT    +D I+  
Sbjct: 88  LQVQRELDWLYAEAGAKLASAVGGLDPRTERR-ALER----GAHIVVGTPGRLRDHIERK 142

Query: 394 KLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            L L  +        DE   FG ++ L+          +L +A    RTL+ ++    +I
Sbjct: 143 ALDLSNIRAIALDEADEMLDFGFREDLEF---------ILGSAPEERRTLLFSATVSKEI 193

Query: 446 SKITE---KPAGRKPIKTV---------------IIPINRIDEVIERLKVVLSEGKKAYW 487
           ++I E   + A R  I T+               +   +R + VI  L+   +   +A  
Sbjct: 194 ARIAETYQRDALR--ISTLSATNQHADITYLAHTVAGHDRENAVINVLRYHAA--PRALV 249

Query: 488 ICPQIEEKKESNFRSVVERFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            C           R  V R  + LH     ++A + G ++  ++   + + ++G   + +
Sbjct: 250 FCAT---------RDAVNRLAAKLHNRGFHAVA-LSGELTQAERTKALQALRDGRATVCV 299

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           AT V   GID+    +++         + LH+  GR GR     + + +
Sbjct: 300 ATDVAARGIDLPGLDLVVHAEPPTNAESLLHRS-GRTGRAGAKGTSVFV 347


>gi|67900874|ref|XP_680693.1| hypothetical protein AN7424.2 [Aspergillus nidulans FGSC A4]
 gi|74656963|sp|Q5AWA6|DBP3_EMENI RecName: Full=ATP-dependent RNA helicase dbp3
 gi|40742814|gb|EAA62004.1| hypothetical protein AN7424.2 [Aspergillus nidulans FGSC A4]
          Length = 498

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 144/343 (41%), Gaps = 46/343 (13%)

Query: 300 GDVGSGKTLV-ALIAMAAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   L  +   ++   +       AV+++P   LA Q Y+ + K+ +   I 
Sbjct: 117 AETGSGKTLAFGLPCLKKVLDLKTKQKSCRPLAVVISPTRELAMQIYDQLVKFAEKVDIQ 176

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
           V  I G + +  +R+AL+      A +++ T    +D     S+   ++  +++DE  R 
Sbjct: 177 VACIFGGVKKDEQREALK-----SAAVVVATPGRLKDLQNDGSLDLGRVKYLVLDEADRM 231

Query: 407 ---GVQQRLK---LTQKATAPHVLLMTAT--PIPRTLV---LTSLGDIDIS-KITEKPAG 454
              G +Q +K        +    ++ TAT  PI R L    +TS   + I    +  P  
Sbjct: 232 LDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLASTFMTSPVTVTIGGDPSADPRA 291

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGK-----KAYWICPQIEEKKESNFRSVVERFNS 509
              IK V+  + +  E  +RL  +L+  +     K    C          ++    R   
Sbjct: 292 NSRIKQVV-EVVKPHEKEQRLVQILNRHQRGTPDKVLAFC---------LYKKEAMRVER 341

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L       +A IHG +S  ++   +++FK+G   +L+AT V   G+D+    +++     
Sbjct: 342 LLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVVNVTFP 401

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
                 +H++ GR GR       I L+       S   ++VLK
Sbjct: 402 LTVEDYVHRI-GRTGRAGADGHAITLFTETDKAQSGALINVLK 443


>gi|333026815|ref|ZP_08454879.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
 gi|332746667|gb|EGJ77108.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
          Length = 492

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 120/284 (42%), Gaps = 32/284 (11%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEA-GGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  GQ  A+++ P   LAQQ  + +  Y ++ ++ +
Sbjct: 110 RGRTGSGKTLAFGLALLARTAGKRAEAGQPLALVLVPTRELAQQVTDALTPYARSVRLRL 169

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRFG 407
             + G MP   +  AL R     A +++ T    +D I     +  ++ + ++DE     
Sbjct: 170 ATVVGGMPIGRQATALRR----GAEVLVATPGRLKDLIDRGHCRLDQVAVTVLDEAD--- 222

Query: 408 VQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                ++T     P V  LL    P  + ++ ++  D ++  +  +     P+   + P 
Sbjct: 223 -----QMTDMGFMPQVTALLDQVRPGGQRMLFSATLDRNVDLLVRRYL-NDPVVHSVDPS 276

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--FRSVVERFNSLHEHFTSS---IAI 520
                 +E   V+   G   + I  +I  +      F       + L EH   S    A 
Sbjct: 277 AGAVTTMEH-HVLHVHGADKHAIATEIAARDGRVLLFLDTKHAVDRLTEHLLRSGVRAAA 335

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +HG  S   +   ++ FK G   +L+AT V   GI V D  +++
Sbjct: 336 LHGGKSQPQRTRTLEQFKTGHVSVLVATNVAARGIHVDDLDLVV 379


>gi|240850851|ref|YP_002972251.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup]
 gi|240267974|gb|ACS51562.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup]
          Length = 460

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 151/349 (43%), Gaps = 49/349 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QA 324
           P   QE AI  +L+     + +L + Q   GSGKTL   + + + + A G        +A
Sbjct: 30  PKPIQEQAIPVMLKG----HDILGVAQ--TGSGKTLAFGLPILSQILALGDKRCPKTARA 83

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+AP   LA Q  E I+   +   +   +I G +    R K ++R+  G   ++I T  
Sbjct: 84  LILAPTRELAVQIDETIRTAAKGAHLSTCLIFGGV---SRLKQIKRMEAG-VDVLIATPG 139

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIP 432
             +D ++   + L     +I+DE  R         V+Q  KL  +       L +AT +P
Sbjct: 140 RLKDLVREKCVDLSQSRFLILDEADRMLDMGFIHDVKQIAKLLHQER--QTALFSAT-MP 196

Query: 433 RTL-VLTSLGDIDISKITEKPAGRKPI----KTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           R + VL      D  KI   P G   +    K   +P N    V+ +L  + +    +  
Sbjct: 197 REIAVLAKCLLNDPVKIEVVPQGTTAVEICQKLYCVPTNEKKNVLSKL--LTNPAFNSVI 254

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +  + +   +S  RS+ +           S+A IHG  S   ++S + +F+  + ++L+A
Sbjct: 255 VFTRTKHGADSVTRSLAK--------IGYSVATIHGNKSQGARQSALKAFRERSVQILVA 306

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           T +   GID+   S +I  +      + +H++ GR GR       + L+
Sbjct: 307 TDIAARGIDIPGISHVINYDLPDEAESYVHRI-GRTGRNGASGEALTLF 354


>gi|162421864|ref|YP_001608121.1| primosome assembly protein PriA [Yersinia pestis Angola]
 gi|162354679|gb|ABX88627.1| primosomal protein n' [Yersinia pestis Angola]
          Length = 732

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 26/207 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+I+ P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENILAQGRQALILVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
              +  + R     R   G+A I+IGT  ALF     + +L ++I+DE+H          
Sbjct: 277 HSGLNDSERLSVWLRARSGEAAIVIGTRSALF---TPFSRLGVIIIDEEHDSSYKQQEGW 333

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP------- 457
           R+  +       +     +++ TATP   TL    +G      +T++    KP       
Sbjct: 334 RYHARDLAVFRAREEGIPIVMGTATPALETLHNVQMGKYRQLTLTKRAGSAKPAAQHLLD 393

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKK 484
           +K + + +     +++++K  L  G +
Sbjct: 394 LKGLPLKVGLSQPLLKQMKTHLQAGNQ 420


>gi|289192981|ref|YP_003458922.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
           FS406-22]
 gi|288939431|gb|ADC70186.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
           FS406-22]
          Length = 362

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 127/313 (40%), Gaps = 51/313 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           + Q   GSGKT    I +   V    G +A+I+ P   LA Q  + I+    N  + +  
Sbjct: 43  VAQARTGSGKTAAFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAK 102

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRF 406
           I G      + KAL+      A+I++GT     D I    L        IL   DE    
Sbjct: 103 IYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNM 157

Query: 407 GVQQRLKLTQKATA--PHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTV 461
           G  + ++    A      +LL +AT +PR    L    +GD    K              
Sbjct: 158 GFVEDVERILNACNRDKRILLFSAT-MPREILNLAKKYMGDYSFIKA------------- 203

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV--------ERFNSLHEH 513
                +I+  IE+  + ++E ++   +C  ++ K   +F  +V        +   ++   
Sbjct: 204 -----KINANIEQSYIEVNENERFEVLCRILKNK---DFYGLVFCKTKKDTKELANMLRD 255

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  IHG ++   +E V+  FK    K+LIAT V+  GIDV D + +I  +      
Sbjct: 256 IGFKAGAIHGDLNQSQREKVIRLFKQKRIKILIATDVMSRGIDVNDLNCVINYHLPQNPE 315

Query: 574 AQLHQLRGRVGRG 586
           + +H++ GR GR 
Sbjct: 316 SYMHRI-GRTGRA 327


>gi|255264544|ref|ZP_05343886.1| primosomal protein N' [Thalassiobium sp. R2A62]
 gi|255106879|gb|EET49553.1| primosomal protein N' [Thalassiobium sp. R2A62]
          Length = 739

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 35/177 (19%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  QE+  + +   +  ++    +L+G  GSGKT V L A+A  +  G QA+++ P I +
Sbjct: 206 TADQETGAEALRVGLRSQDYGTTLLKGVTGSGKTEVYLEAVAECLAQGRQALVLLPEIAL 265

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMP--------QAHRRKALERIAHGQAHIIIGTH- 383
            A    EF+ +        VE   G  P           RR+    +  G A +++G   
Sbjct: 266 TA----EFLTR--------VEACFGAKPAEWHSGVTMTERRRCWRMVGQGDAQLVVGARS 313

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------TAPHVLLMTATP 430
           ALF   + Y  L L+IVDE+H    +Q   +   A              V+L +ATP
Sbjct: 314 ALF---LPYQNLGLIIVDEEHDTSYKQEDGVLYNARDMAVLRASIVGAQVVLASATP 367


>gi|223932610|ref|ZP_03624610.1| primosomal protein N' [Streptococcus suis 89/1591]
 gi|302023428|ref|ZP_07248639.1| primosome assembly protein PriA [Streptococcus suis 05HAS68]
 gi|330832246|ref|YP_004401071.1| primosomal protein N' [Streptococcus suis ST3]
 gi|223898720|gb|EEF65081.1| primosomal protein N' [Streptococcus suis 89/1591]
 gi|329306469|gb|AEB80885.1| primosomal protein N' [Streptococcus suis ST3]
          Length = 796

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 30/207 (14%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q  A+++I+  + Q+++   +LQG  GSGKT V L  +   ++ G  A+++ P I +  Q
Sbjct: 264 QAIAVREIVASIGQESQTF-LLQGVTGSGKTEVYLQVIDRVLKMGKTAIMLVPEISLTPQ 322

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               FI ++ Q     V I+   +    +     +I  G A +++G   A+F        
Sbjct: 323 MTNRFISRFGQQ----VAILHSGLSDGEKYDEWRKIEAGNAQVVVGARSAIF---APLTN 375

Query: 395 LILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L ++I+DE+H          R+  +   KL        ++L +ATP   T    S G   
Sbjct: 376 LGVIIIDEEHEATYKQDSNPRYHARDVAKLRADYNRATLVLGSATPSLETRARASRG--- 432

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEV 471
                    GR  +     P+ RI EV
Sbjct: 433 -------VYGRLTLNQRANPLARIPEV 452


>gi|239500898|ref|ZP_04660208.1| primosomal protein N' [Acinetobacter baumannii AB900]
          Length = 742

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +  + Q+ A + +L    Q    L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 202 LAQMPLTLNEDQKKATQHVLNAQHQYQAFL--LDGLTGSGKTEVYLHIMHEVLKQGKQVL 259

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F  ++  +    + ++   +  + R +A ++   G+A II+GT +
Sbjct: 260 VLVPEIGLTPQTISRFKSRFNCD----IALLHSGLNDSKRLQAWQQAQTGKASIILGTRS 315

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                +   +L L+I+DE+H    +Q+
Sbjct: 316 AIYTPLP--RLGLIILDEEHDLSYKQQ 340


>gi|19746579|ref|NP_607715.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232]
 gi|94994869|ref|YP_602967.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
 gi|139473299|ref|YP_001128014.1| ATP-dependent RNA helicase [Streptococcus pyogenes str. Manfredo]
 gi|19748794|gb|AAL98214.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS8232]
 gi|94548377|gb|ABF38423.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
 gi|134271545|emb|CAM29769.1| putative helicase [Streptococcus pyogenes str. Manfredo]
          Length = 447

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 133/314 (42%), Gaps = 29/314 (9%)

Query: 302 VGSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +       +A  Q VI AP   LA Q ++  K+  +++Q   EI   N
Sbjct: 47  TGSGKTHTFLLPIFEKLDEAKAEVQVVITAPSRELATQIFDACKQIAKHSQ--EEIRLAN 104

Query: 359 -MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRL 412
            +    + + +E++   Q HI+IGT     D ++      +K    +VDE         L
Sbjct: 105 YVGGTDKLRQIEKLKGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFL 164

Query: 413 KLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               K  A       +L+ +AT IP+ L         + K    P   + IKT  +  + 
Sbjct: 165 DTVDKIAASLPKSVQILVFSAT-IPQKLQPF------LKKYLTNPVIEQ-IKTKTVIADT 216

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGR 524
           ID  +   K     G+    I   ++      F +  ER + LH   T++   +A IHG 
Sbjct: 217 IDNWLVSTKGRDKNGQ-LLEILKTMQPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGG 275

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +   +++ +M+  K    + ++AT +   GID+   S +I +         +H++ GR G
Sbjct: 276 IPPRERKRIMNQVKKLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTG 334

Query: 585 RGEEISSCILLYHP 598
           R     + I LY P
Sbjct: 335 RNGMAGTAITLYQP 348


>gi|257063702|ref|YP_003143374.1| primosomal protein N' [Slackia heliotrinireducens DSM 20476]
 gi|256791355|gb|ACV22025.1| primosomal protein N' [Slackia heliotrinireducens DSM 20476]
          Length = 695

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 9/192 (4%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLR--ILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           N   S T+ Q++A   I + +  K    R  ++ G  GSGKT V L ++   +E G  A+
Sbjct: 147 NDDLSLTEGQKAAFDAISEAIDGKPDAGRCIVVDGVTGSGKTEVYLRSIGKVLEVGQGAI 206

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-A 384
           ++ P   L  Q     K    NT   V ++  NM QA R      +  G+  +++G   A
Sbjct: 207 VLVPEIALTPQTVARFKGRFGNT---VAVMHSNMTQAQRYDEWTAVKRGERRVVVGARSA 263

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           LF       +L ++I+DE+H    +Q       A    V L     IP  L   +     
Sbjct: 264 LFA---PVGRLGIIIIDEEHESTYKQESAPRYHARDIAVWLGDRLGIPVVLGSATPSIES 320

Query: 445 ISKITEKPAGRK 456
           +     KP  RK
Sbjct: 321 LHACATKPGWRK 332


>gi|145342427|ref|XP_001416184.1| Ddx49-related DEAD box helicase superfamily II protein
           [Ostreococcus lucimarinus CCE9901]
 gi|144576409|gb|ABO94477.1| Ddx49-related DEAD box helicase superfamily II protein
           [Ostreococcus lucimarinus CCE9901]
          Length = 417

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 129/322 (40%), Gaps = 42/322 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           +R + F+ P+  Q+S I  ILQ          I   + GSGKT    + +   +     G
Sbjct: 17  IRQLGFTEPSSVQKSCIPPILQGRDV------IGIANTGSGKTAAFALPVVHVLSVDPHG 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+ ++P   LA Q  E    ++    +  E++ G      +  +L +    + HI++ 
Sbjct: 71  VFALCLSPTRELAYQIAEQFAVFSVGMSLRCEVVIGGEDLLRQASSLSK----RPHIVVA 126

Query: 382 THALF-------QDSIQYY-KLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTA 428
           T            D+I+ + +L  +I+DE  R     F  + R  LT        L+ +A
Sbjct: 127 TPGRLLEHFMHSSDTIECFQRLKFLILDEADRLLDSSFEAELRYLLTNLPQKRQTLMFSA 186

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERL--KVVLSEG 482
           T  P  + L  L         EK     P         +P    D  +  +  ++V S+ 
Sbjct: 187 TITPSVIALKPLLGQRAFYYEEKGELTTPTGCAQYYCFMPEKVKDTYLVHVLRELVSSKS 246

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            +A   CP +++          E  + +  +   +   +H      D+ S +++FK+   
Sbjct: 247 TRAMIFCPTVQK---------CEMVSHMLHNLGIAACSLHAAKKQRDRHSTLNAFKSTMV 297

Query: 543 KLLIATTVIEVGIDVVDASIII 564
           K+L+AT V   G+D+ D  +++
Sbjct: 298 KILVATDVAARGLDLPDVELVV 319


>gi|289207433|ref|YP_003459499.1| primosomal protein N' [Thioalkalivibrio sp. K90mix]
 gi|288943064|gb|ADC70763.1| primosomal protein N' [Thioalkalivibrio sp. K90mix]
          Length = 731

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 104/235 (44%), Gaps = 30/235 (12%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           ++ T  QE+AI  +  D  +      +L+G  GSGKT V L   A AV  G Q + + P 
Sbjct: 200 YTLTPEQEAAIAAVSPDDPRPM----LLEGVTGSGKTEVYLRMAADAVARGRQVLFLIPE 255

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDS 389
             L  Q      +  Q     V ++   + +  R +A E    G+  I++GT  ALF   
Sbjct: 256 IALTPQ---LAGRIQQRFPGQVALLHSGLAEGERLRAWEAARQGERRIVVGTRSALF--- 309

Query: 390 IQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATPIPRTLVLT 438
           +   +  L+IVDE+H    +Q+           +K  Q    P V+L +ATP   TL   
Sbjct: 310 VPLPEPGLIIVDEEHDSAFKQQDGFRYSARDLAIKRGQLEHTP-VVLGSATPTLETLHAA 368

Query: 439 SLGDIDISKITEKPAGRKP--IKTVIIPINRIDE-----VIERLKVVLSEGKKAY 486
             G      +  +P G +P  ++T+   ++  DE     +++ ++  L+ G + +
Sbjct: 369 RQGRYTHVHLRSRPDGTQPPSVETIDTRVHSPDEGLTAPLLDAMQQTLAAGAQCF 423


>gi|167913398|ref|ZP_02500489.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 112]
          Length = 465

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 136/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + I++  +  + + V
Sbjct: 49  IAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKV 108

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHII+GT     D +    L L     +++DE  R  
Sbjct: 109 LTLCGGTPMRPQTQSLE---HG-AHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRML 164

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K      +     P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 165 DMGFFDDIAK------VARQCPPTRQTLLFSATYPDGIAKLSQQFL-RHP-KRVKLEERH 216

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 217 DDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 276

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 277 -HGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVYVHRI- 334

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 335 GRTGRADQ 342


>gi|170576579|ref|XP_001893687.1| RNA-dependent helicase [Brugia malayi]
 gi|158600176|gb|EDP37484.1| RNA-dependent helicase, putative [Brugia malayi]
          Length = 553

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 135/323 (41%), Gaps = 45/323 (13%)

Query: 302 VGSGKT----LVALIAMAAAVEAGGQ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT    L A++        G Q     +++ P   LAQQ  E  K Y + T + + 
Sbjct: 174 TGSGKTFAFILPAIVHTINQPPRGHQKSPSVLVLLPTRELAQQVEEVAKDYCRATDLSIT 233

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P+A + + LER       III T     D ++  K  L     +++DE  R   
Sbjct: 234 CLFGGAPKATQARDLER----GVDIIIATPGRLMDFLEIGKTDLRRCTYLVLDEADRMLD 289

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKP 457
             F  Q R  ++Q       L+ +AT  P+ +       LT    +++  + E  A    
Sbjct: 290 MGFEPQIRKVVSQIRPDRQTLMFSAT-WPKDVRKLAMDFLTDAAHLNVGSL-ELSANHNI 347

Query: 458 IKTVIIPINRIDEVI--ERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            + V I    IDE    +RL  +LS+   K+       +E K++++  +   R +     
Sbjct: 348 TQIVEI----IDESNKQQRLMAILSDIMNKEDCKTIIFVETKRKADDLTRWMRRDGW--- 400

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  IHG     +++  +  F++G   +L+AT V   G+DV D   +I  +  +   
Sbjct: 401 ---PALCIHGDKGQSERDWALSEFRSGKTPILLATDVAARGLDVDDIKYVINFDYSNNSE 457

Query: 574 AQLHQLRGRVGRGEEISSCILLY 596
             +H++ GR GR ++       +
Sbjct: 458 DYVHRI-GRTGRRDKTGVAYTFF 479


>gi|332019714|gb|EGI60184.1| DEAD-box helicase Dbp80 [Acromyrmex echinatior]
          Length = 481

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 147/354 (41%), Gaps = 75/354 (21%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P++ QE+A+  +L D  Q      I Q   G+GKT   ++AM + V+      Q + ++
Sbjct: 116 APSRIQETALPTLLADPPQN----MIAQSQSGTGKTAAFVLAMLSRVDVTKEYPQVLCLS 171

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K ++    I       +  A R + + R +    HIIIGT     D
Sbjct: 172 PTYELAIQTGEVAAKMSRFCPEI------KIKYAVRGEEISRGSKISEHIIIGTPGKVLD 225

Query: 389 SIQYYKLI--------------LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
             Q +K                ++I  + H+    +  KL  +A    ++  +AT  P  
Sbjct: 226 WGQKFKFFDLSKISVFVLDEADVMIATQGHQDQCIRIHKLLPRAC--QMMFFSATYEPEV 283

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    +       I   P        +II + R +E ++ +K       + Y  C  ++E
Sbjct: 284 MNFAEI-------IVSNP--------LIIRLLREEESLDNIK-------QYYIRCKNVDE 321

Query: 495 KKE--SNFRSVVERFNSL---HEHFTSS------------IAIIHGRMSDIDKESVMDSF 537
           K    +N   V+    ++   H   T+S            +AI+ G ++   + SV+D F
Sbjct: 322 KYTAITNIYGVITIGQAIIFCHTKKTASWLAGKMTKDGHAVAILSGDLTVEQRISVLDRF 381

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIII------IENAEHFGLAQLHQLRGRVGR 585
           + G  K+LI T V+  GIDV   +I++       +N +      LH++ GR GR
Sbjct: 382 RAGLEKVLITTNVLARGIDVEQVTIVVNFDLPMDQNRQADCETYLHRI-GRTGR 434


>gi|327401630|ref|YP_004342469.1| helicase domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327317138|gb|AEA47754.1| helicase domain protein [Archaeoglobus veneficus SNP6]
          Length = 746

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 16/139 (11%)

Query: 303 GSGKTLVALIAMAAAV-EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           G GKT VAL+ +A+ +   GG+A+++AP   L +QH  F +K  +     V  ++G  P 
Sbjct: 39  GLGKTAVALLVIASRLHNEGGKALVLAPTKPLVEQHASFFRKNLRLNSEEVIALSGETPP 98

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-FGVQQRLKLT 415
             R +  E+     A +I+ T  + ++ +   ++ L     +  DE HR  G    + + 
Sbjct: 99  EKRAELWEK-----ARLIVSTPQVVENDVLAGRISLKDVVHITFDEAHRAVGEYSYVYIA 153

Query: 416 QK----ATAPHVLLMTATP 430
           +K    A  P VL MTA+P
Sbjct: 154 EKYFEEAKKPLVLAMTASP 172



 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           MS  ++   ++ F++G  K+L+AT+V E G+D+    +++   A    +  + Q +GR G
Sbjct: 405 MSQKEQVETLERFRSGEIKVLVATSVGEEGLDIPSTDLVVFYEAVPSEIRAI-QRKGRTG 463

Query: 585 RGEEISSCILL 595
           R  E    +L+
Sbjct: 464 RAREGRIVVLI 474


>gi|325280173|ref|YP_004252715.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324311982|gb|ADY32535.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 417

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 130/322 (40%), Gaps = 41/322 (12%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            G+GKT    + + + + A G      +AVIM P   LAQQ     + ++    I   ++
Sbjct: 47  TGTGKTAAYTLPLLSRLVAEGNPDNHIRAVIMVPTRELAQQIDMQFEGFSYFLPISTTVV 106

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---- 406
            G    A   +  + +  G A ++I T       +    I   ++   I+DE  R     
Sbjct: 107 YGGGDGAGWDQQKKGLLMG-ADVVIATPGRLLSHIANSGIDLSQVSYFILDEADRMLDMG 165

Query: 407 ---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
               + Q +K  Q  T    +L +AT  P+   L         +I + PA       + I
Sbjct: 166 FFDDIMQIVK--QMPTKRQTILFSATLPPKIRQLAK-------QILKDPA------EINI 210

Query: 464 PINRIDEVIERLKVVLSEGKKAYWI---CPQIEEKKESNFRSVVERFNSLH---EHFTSS 517
            I++ +E I +   +  E +K   I     +   KK   F S  ++   L    +    +
Sbjct: 211 AISKPNEAIIQSAYICYETQKMAIIQELFSKPNRKKTIIFSSSKQKVKDLAYSLKRMKLN 270

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A +H  +    +E+VM  FKNG   +L+AT ++  GID+ D  ++I  +  H     +H
Sbjct: 271 VAAMHSDLEQEQREAVMLDFKNGKTDILVATDIVARGIDIDDIGLVINYDVPHDPEDYIH 330

Query: 578 QLRGRVGRGEEISSCILLYHPP 599
           ++ GR  R       I     P
Sbjct: 331 RI-GRTARANADGVAITFVCEP 351


>gi|262045708|ref|ZP_06018672.1| competence protein [Lactobacillus crispatus MV-3A-US]
 gi|260573667|gb|EEX30223.1| competence protein [Lactobacillus crispatus MV-3A-US]
          Length = 426

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 147/343 (42%), Gaps = 50/343 (14%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q++    ++Q+  Q+   L  +    G+GKT +    +A  ++ G +A I  P I +
Sbjct: 93  TPLQQNISDKLVQNFEQRKNTL--VHAVTGAGKTEMLFQLIARCMKKGQRACIATPRIDV 150

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK----ALERIAHGQAHIIIGTHALFQD 388
           + +    F   + Q     VEI      + H R+     LE++       I  TH L   
Sbjct: 151 VNELFPRFSAAFAQ-----VEI-----GKYHGREFKEIGLEQLT------ICTTHQL--- 191

Query: 389 SIQYYKLI-LVIVDEQHRFGVQQRLKLTQKA-----TAPHVLLMTATPIPRTLVLTSLGD 442
            +++Y+   L+++DE   F      +L   A     T    + +TATP    L+    G 
Sbjct: 192 -MKFYRAFDLLVIDEVDSFPYVGNPQLHFAAKNAVKTTGTRMYLTATPTNDLLLEAKTGK 250

Query: 443 IDISKITEK-PAGRKPI---KTVIIPINRIDEV----IERLKVVLSEGKKAYWICPQIEE 494
           ++I ++  +   G  P+   +  I P  R  ++    ++ +K V+  G       P+IEE
Sbjct: 251 LEILRLNRRFHGGLLPVPRERLFIRPFLRKGQIHPKLMQEIKKVIQSGHPLLLFVPRIEE 310

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                   +     +L +   + I +      D  +   + +F++    LL+ TT++E G
Sbjct: 311 --------IPLYQEALRKKLQNKIKLAGVHAQDPQRLEKVQAFRDRKYDLLLTTTILERG 362

Query: 555 IDVVDASIIIIENAEH-FGLAQLHQLRGRVGRGEEISSCILLY 596
           +   +  +III   +  +  A L Q+ GRVGR  +  + ++LY
Sbjct: 363 VTFKNVWVIIIAADDAIYTAASLVQIAGRVGRAHDDQTGLVLY 405


>gi|220933462|ref|YP_002512361.1| primosomal protein N' [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994772|gb|ACL71374.1| primosomal protein N' [Thioalkalivibrio sp. HL-EbGR7]
          Length = 737

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 21/188 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQG  GSGKT V L  + AA+  G Q +++ P   L  Q    ++++       V ++ 
Sbjct: 228 LLQGVTGSGKTEVYLQLIEAALAEGRQTLVLVPEIALTPQ---LVRRFRSRLACPVAVLH 284

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR---- 411
             + +  R         G A +IIGT  A+F   + + +  L+IVDE+H    +Q     
Sbjct: 285 SGLGERERLDGWLAARSGAAGVIIGTRSAVF---VPWARPGLIIVDEEHDGSFKQHEGFR 341

Query: 412 -------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
                  +K     + P VLL +ATP   +L   + G     ++ E+  G  P +  ++ 
Sbjct: 342 YHARDVAVKRAHLESVP-VLLGSATPSFESLANVTRGQYTRLRLRERAGGAAPPRVELLD 400

Query: 465 INR--IDE 470
           + R  +DE
Sbjct: 401 LRRQTLDE 408


>gi|242280865|ref|YP_002992994.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
 gi|242123759|gb|ACS81455.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 517

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 132/334 (39%), Gaps = 76/334 (22%)

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNT 348
           NR L ++Q   GSGKT   ++ +   ++      QA+I+ P   LA+Q     +K  + +
Sbjct: 70  NRDL-MVQAKTGSGKTGAFVLPLLEKLDPNINYTQALILVPTRELARQVEREAEKIFEGS 128

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQ 403
            + V  + G +   H+R+ LE+     AH+++GT       L + +     L  +I DE 
Sbjct: 129 GLRVLSVYGGVGYGHQREELEK----GAHMVVGTPGRILDHLLKRTFDLEDLETLIFDEA 184

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            R                               + S+G     +  +    R+PI T + 
Sbjct: 185 DR-------------------------------MLSIGFYPDMREVKSYLPRRPISTYMF 213

Query: 464 PINRIDEVIERLK---------------VVLSEGKKAYWICPQIEEKKE----------- 497
                + VI   K               V ++E   AY+  P + ++++           
Sbjct: 214 SATFPEHVIRLSKEFMYKPQMLSLSSKQVHVTEIDHAYYEVPSMGKERQLMRILEMENPT 273

Query: 498 -----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N ++ VE   ++  +F  + A +   +S   +E V+   ++G+ + L+AT +  
Sbjct: 274 SAIIFCNTKANVEFVTAVLNNFGFNAADLTSDLSQSKRERVLAQLRDGSVRFLVATDIAA 333

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            GIDV D S +I+        + +H+  GR GR 
Sbjct: 334 RGIDVPDLSHVIMYEPPEDKESYIHRA-GRTGRA 366


>gi|19387221|gb|AAL87141.1|AF479822_1 DEAD box RNA helicase Vasa [Oryzias latipes]
          Length = 396

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 67/337 (19%), Positives = 142/337 (42%), Gaps = 64/337 (18%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+ +   + A G            +AVI+AP   L  Q Y+  +K++  T 
Sbjct: 6   TGSGKTAAFLLPILQQLMADGVAASRFSGIQEPEAVIVAPTRELINQIYQEARKFSFGTC 65

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   ++ G +   ++ + +E+      +++ GT     D I   K+ L     +++DE  
Sbjct: 66  VRPVVVYGGVNTGYQMREIEK----GCNVLCGTTGRMLDLIGRGKVGLSKVRHLVLDEAD 121

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK------- 451
           R        +      P +  +  +P +P     +TL+ ++    DI ++          
Sbjct: 122 R--------MLDMGFEPDMRRLVGSPGMPSKEERQTLMFSATFPEDIQRLAADFLKVDYL 173

Query: 452 -------PAGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
                        ++   + +   N+ +++++ L+ + SE    +     +E K++++F 
Sbjct: 174 FVAVGVVGGAVTDVEQTFLQVTKFNKREQLLDLLRTIGSERTMVF-----VETKRQADF- 227

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             +  F    +  T+SI   HG     ++E  +  F++G C +L+AT+V   G+D+ D  
Sbjct: 228 --IAAFLCQEKVPTTSI---HGDREQREREKALADFRSGKCPVLVATSVASRGLDIPDVQ 282

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            ++  +  +     +H++ GR GR       +  Y P
Sbjct: 283 HVVNFDLPNTIDDYVHRI-GRTGRCGNTGRAVSFYDP 318


>gi|326911972|ref|XP_003202329.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
           [Meleagris gallopavo]
          Length = 645

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 139/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 120 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 177

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 178 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEAGKTNLRRCTYLVL 233

Query: 401 DEQHRF---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G +             R  L   AT P  +   A    +  V  ++G++++
Sbjct: 234 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINVGNLEL 293

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 294 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 335

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 336 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 395

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 396 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 447


>gi|327284970|ref|XP_003227208.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Anolis
           carolinensis]
          Length = 647

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 138/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 126 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 183

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 184 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEAGKTNLRRCTYLVL 239

Query: 401 DEQHRF---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G +             R  L   AT P  +   A       V  ++G++++
Sbjct: 240 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLHDYVQINVGNLEL 299

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 300 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 341

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 342 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 401

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 402 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 453


>gi|291244806|ref|XP_002742284.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Saccoglossus kowalevskii]
          Length = 425

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 127/302 (42%), Gaps = 62/302 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   +E      QA+I+AP   LAQQ  + +            
Sbjct: 91  IAQAQSGTGKTATFSIAILQQLEITRMSSQALILAPTRELAQQIQKVVIALGDYMGAQCH 150

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK----------LILVIVDEQ 403
              G     + R+ + ++  GQ H+++GT     D I               +L   DE 
Sbjct: 151 ACIGG---TNVREDMRKLESGQ-HVVVGTPGRVHDMINRRAPLSDVSDIKIFVLDEADEM 206

Query: 404 HRFGVQQRLKLTQKATAPH---VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
              G + ++    +   PH   V+L++AT +P          +D+ ++T+K   R PI+ 
Sbjct: 207 LSRGFKDQIYDVFRL-LPHSVQVILLSAT-MP----------VDVLEVTKKFM-RDPIRI 253

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------------------SNFRS 502
           ++           R + +  EG + ++I  + EE K                   SN R 
Sbjct: 254 LV-----------RKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFSNTRR 302

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            V+      +    +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S+
Sbjct: 303 KVDWLTEKMQGRDFTVSSLHGDMDQKERDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 362

Query: 563 II 564
           +I
Sbjct: 363 VI 364


>gi|264681499|ref|NP_001161137.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Rattus
           norvegicus]
 gi|261263564|gb|ACX55119.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Rattus
           norvegicus]
          Length = 652

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 98/434 (22%), Positives = 184/434 (42%), Gaps = 91/434 (20%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG------------ 259
           K+ + +W+ P    ERL   EL +G  A +     F+K   IP+   G            
Sbjct: 123 KSDEDDWSKPLPPSERLE-QELFSGGNAGI----NFEKYDDIPVEATGNNCPPHIENFSD 177

Query: 260 -KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-- 312
            ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSG T   L+  
Sbjct: 178 VEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGCTAAFLLPI 231

Query: 313 -----------AMAAAVEAG--GQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
                      A+ A  E G  G+      ++++AP   LA Q YE  +K++  +++   
Sbjct: 232 LSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 291

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      + + LER      H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 292 VVYGGADTVQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 347

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 348 MGFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSE 406

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  +D+    L ++ + G+ +  +   +E KK ++    +E F    E +  
Sbjct: 407 NITQKVVWVEELDKRSFLLDLLNATGRDSLTLV-FVETKKGAD---SLENF-LFQERY-- 459

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ- 575
           +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I     +F L   
Sbjct: 460 ACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVI-----NFDLPSD 514

Query: 576 ----LHQLRGRVGR 585
               +H++ GR GR
Sbjct: 515 IEEYVHRI-GRTGR 527


>gi|219851698|ref|YP_002466130.1| Hef nuclease [Methanosphaerula palustris E1-9c]
 gi|219545957|gb|ACL16407.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
           E1-9c]
          Length = 754

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 21/144 (14%)

Query: 302 VGSGKTLVALIAMAAAV-EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ---IIVEIITG 357
            G GKT +AL+  A+ +    G+ ++MAP   L +QH+ F  K+ Q  +       + TG
Sbjct: 39  TGLGKTAIALLVAASRLLNHQGKVLVMAPTRPLVEQHFRFFSKFLQTKEGESFPAVLFTG 98

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHR------F 406
           + P A R+   E     QA +   T  + ++           + L+IVDE HR      +
Sbjct: 99  DTPPAERKAGWE-----QATLCFATPQVIKNDCIAGRYSLADVTLLIVDECHRAVGNYAY 153

Query: 407 GVQQRLKLTQKATAPHVLLMTATP 430
           G      L + A  P VL MTA+P
Sbjct: 154 GFITERYL-ETARRPLVLAMTASP 176


>gi|209515859|ref|ZP_03264721.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209503707|gb|EEA03701.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 467

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 140/309 (45%), Gaps = 32/309 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + I++  +  + I V
Sbjct: 50  IAQAKTGSGKTAAFSLALLARLDARKFDTQAMVLCPTRELADQVTQEIRRLARAEENIKV 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G  P   +  +LE   HG AH+++GT     D ++   L+L     +++DE  R  
Sbjct: 110 LTLCGGTPMRPQTASLE---HG-AHVVVGTPGRIMDHLERGTLVLQALNTLVLDEADRML 165

Query: 406 -FGVQQRL-KLTQKATAPHVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIKT 460
             G    + K+ ++       L+ +   P  +   S   L +    K+ E+    K I+ 
Sbjct: 166 DMGFFDDIAKVARQCPKERQTLLFSATYPEGIAKLSQQFLRNPKEVKLAERHDDSK-IRQ 224

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
               ++  DE +  + ++L+  +    I     +++  +   V+ R    H     ++A+
Sbjct: 225 RFYEVSE-DERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLLDVL-RAQGFH-----ALAL 277

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  N +     ++H  R
Sbjct: 278 -HGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVI--NVDVTPDPEVHTHR 334

Query: 581 -GRVGRGEE 588
            GR GR ++
Sbjct: 335 IGRTGRADQ 343


>gi|328353170|emb|CCA39568.1| eukaryotic initiation factor 4A [Pichia pastoris CBS 7435]
          Length = 486

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 124/286 (43%), Gaps = 36/286 (12%)

Query: 299 QGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   G+GKT    I+    ++      Q +I+AP   LA Q  + +     +  I V   
Sbjct: 148 QAQSGTGKTATFAISALQRLDEKLKAAQVLILAPTRELALQIKKVVLALGMHLNISVHAC 207

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR----- 405
            G +  A   KA     +    I++GT    QD I+        + +VI+DE        
Sbjct: 208 IGGVDPALDVKAF----NSGVQIVVGTPGRVQDMIERGAFRTENVKMVILDEADEMLSTG 263

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           F  Q     T   +   V+L++AT +P+          ++ ++T K     PI+ ++   
Sbjct: 264 FKEQIYTLFTLLPSTTQVVLLSAT-MPQ----------EVLEVTTK-FMNNPIRILVKKD 311

Query: 466 NRIDEVIERLKVVLSEGKKAY-WICP---QIEEKKESNFRSVVERFNSLHEHFTS---SI 518
               E I++  V + E +  +  +C     I   +   F +   +   L E  T+   ++
Sbjct: 312 QLTLEGIKQFYVDVGEEQYKFDCLCDLYDSISVTQAVIFCNTRRKVEELTERLTAQKFTV 371

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           + IH  +S  +++++M  F+ G+ ++LI+T ++  GIDV   S++I
Sbjct: 372 SAIHSELSQTERDTIMQEFRTGSSRILISTDLLARGIDVQQVSLVI 417


>gi|323203477|gb|EFZ88501.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
          Length = 380

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 139/326 (42%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI------ 399
              + G  P   +R +L+       HII+ T     D +Q   +      ILV+      
Sbjct: 105 T--LCGGQPFGAQRDSLQH----APHIIVATPGRLLDHLQKETVSLDALHILVMDEADRM 158

Query: 400 --------VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                   +DE  RF  + R  L   AT P  +   +  + +  +      I+I  +   
Sbjct: 159 LDMGFSDAIDEVIRFAPETRQTLLFSATWPDAIAAISGRVQQQPI-----RIEIDTVDAL 213

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           PA  +           + E I  L+ +LS+ + A  +   +    + + ++V +  N++ 
Sbjct: 214 PAIEQQFFE-----TSVHEKISLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALNAVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 Q---SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELVVNYELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFC 345


>gi|317494771|ref|ZP_07953183.1| primosomal protein N [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917373|gb|EFV38720.1| primosomal protein N [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 731

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 23/194 (11%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I  + +Q +  L  L G  GSGKT V L  +   +  G QA+++ P IG+  Q
Sbjct: 202 QATAVGAIRSEDNQFSAWL--LAGVTGSGKTEVYLSVIENILAQGRQALVLVPEIGLTPQ 259

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
                I ++ +     V+++   +  + R  A  R  +G++ I+IGT  ALF     + +
Sbjct: 260 T----IARFRERFNAPVDVLHSGLNDSERLAAWLRARNGESAIVIGTRSALF---TPFAR 312

Query: 395 LILVIVDEQHRFGVQQRLKLTQKA-----------TAPHVLLMTATPIPRTLVLTSLGDI 443
           L ++I+DE+H    +Q+      A             P ++L +ATP   TL    LG  
Sbjct: 313 LGVIIIDEEHDGSYKQQEGWRYHARDLAVFRAHQENIP-IVLGSATPALETLHNVELGKY 371

Query: 444 DISKITEKPAGRKP 457
              ++T++    KP
Sbjct: 372 RRLRLTQRAGNAKP 385


>gi|124381735|ref|YP_001025050.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei NCTC 10229]
 gi|126447168|ref|YP_001079394.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei NCTC 10247]
 gi|254356161|ref|ZP_04972438.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei 2002721280]
 gi|126240022|gb|ABO03134.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei NCTC 10247]
 gi|148025144|gb|EDK83313.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei 2002721280]
 gi|261826475|gb|ABN00540.2| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei NCTC 10229]
          Length = 463

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 136/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + I++  +  + + V
Sbjct: 49  IAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKV 108

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHII+GT     D +    L L     +++DE  R  
Sbjct: 109 LTLCGGTPMRPQTQSLE---HG-AHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRML 164

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K      +     P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 165 DMGFFDDIAK------VARQCPPTRQTLLFSATYPDGIAKLSQQFL-RHP-KRVKLEERH 216

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 217 DDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 276

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 277 -HGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVYVHRI- 334

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 335 GRTGRADQ 342


>gi|307721994|ref|YP_003893134.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM
           16294]
 gi|306980087|gb|ADN10122.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM
           16294]
          Length = 452

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 173/402 (43%), Gaps = 70/402 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQ---HYEFIKKYTQNTQI 350
           I Q   GSGKT    I +   +       Q++++ P   LA Q       + ++  N +I
Sbjct: 42  IAQAKTGSGKTAAFGIGLLHHLNVKKFRVQSLVLCPTRELADQVAKELRRLARFQHNIKI 101

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR 405
           +  +++G   ++  R+ L  +AH QAHII+GT       L ++S++   L  ++ DE  R
Sbjct: 102 L--MLSGG--ESFGRQ-LGSLAH-QAHIIVGTPGRVLKHLNKESLELSNLNTLVFDEADR 155

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITE---------KPAGR 455
                 L +        VL     P  R TL+ ++  D +I +I++         K A +
Sbjct: 156 M-----LDMGFIEEIESVLAFV--PKERQTLLFSATYDDEILQISKRIQNNALHVKTAAQ 208

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC---PQIEEKKESNFRSVVERFNSLHE 512
           +    ++      ++ ++ L  +L+  K    I     ++E K         E   SL +
Sbjct: 209 EVQNKIVQEFYETNDKVDTLIKILANYKPENVIVFTNTKLEAK---------ELAESLVQ 259

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++AI HG +   ++  V+  F N +C +L+AT V   G+D+ D S+++  +  H  
Sbjct: 260 NKIDALAI-HGDLEQYERNDVLVQFANKSCPVLVATDVAARGLDIKDLSMVVNYDLPHSM 318

Query: 573 LAQLHQLRGRVGRGEEISSCILLY----------HPPLSKNSYTRLSVLKNTEDGF---- 618
               H++ GR GR       + LY          +    K+ +   S LK  E GF    
Sbjct: 319 ETYTHRI-GRTGRAGAEGIAVTLYNEYEAQKIEPYEEDEKHVFLDASALKK-EQGFEMKP 376

Query: 619 ----LIAEEDLKQR-KEGEILG--IKQSGMPKFLIAQPELHD 653
               L+ E   K + + G+ILG     +G+    I + +L+D
Sbjct: 377 QYVTLVIEGGKKDKIRAGDILGALTGDAGLQGSSIGKIDLYD 418


>gi|91206538|sp|Q2U070|DBP2_ASPOR RecName: Full=ATP-dependent RNA helicase dbp2
 gi|83774922|dbj|BAE65045.1| unnamed protein product [Aspergillus oryzae]
          Length = 554

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 145/343 (42%), Gaps = 53/343 (15%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +++AP   LA Q    I K+ ++++I  
Sbjct: 175 ETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRN 234

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR-- 405
             + G +P+  + + L R       + I T     D ++       ++  +++DE  R  
Sbjct: 235 TCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRML 290

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
              F  Q R  ++Q           AT P  +   A+      +  ++G +D+S   +IT
Sbjct: 291 DMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRIT 350

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           +       I  V+    + D++I+ L K++ + G K            E      + RF 
Sbjct: 351 Q-------IVEVVSDFEKRDKMIKHLEKIMENRGNKCLIFTGTKRIADE------ITRF- 396

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D + ++  + 
Sbjct: 397 -LRQDGWPALSI-HGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDY 454

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            +     +H++ GR GR     + I  +    SK +   +++L
Sbjct: 455 PNNSEDYVHRI-GRTGRAGAKGTAITFFTTDNSKQARDLVTIL 496


>gi|310815281|ref|YP_003963245.1| primosomal protein N', putative [Ketogulonicigenium vulgare Y25]
 gi|308754016|gb|ADO41945.1| primosomal protein N', putative [Ketogulonicigenium vulgare Y25]
          Length = 738

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 28/205 (13%)

Query: 259 GKIAQKIL-RNIPFS------PTKS---QESAIKDILQDMSQKNRM-LRILQGDVGSGKT 307
           G I++++  +++PF       P K+   +++A  D L+   +  +    +L+G  GSGKT
Sbjct: 180 GAISEEVAPKDLPFQRLNPAHPGKALTDEQTAAADALRTSVRSGQYGTTLLKGVTGSGKT 239

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            V L A+A  + AG QA+++ P   L+    EF+++  +            +    RR+ 
Sbjct: 240 EVYLEAVAETLRAGRQALVLLPEIALSG---EFLRRVEERFGARPAEWHSGITMTERRRV 296

Query: 368 LERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHR----------FGVQQRLKLTQ 416
            + I  G A +++G   ALF   + +  L L++VDE+H           +  +    L  
Sbjct: 297 WKMIGTGDAQVVVGARSALF---LPFQDLGLIVVDEEHDGSYKQGDGVLYNARDMAVLRA 353

Query: 417 KATAPHVLLMTATPIPRTLVLTSLG 441
              A  V+L +ATP   T V    G
Sbjct: 354 SLNAAQVVLASATPSLETWVNADTG 378


>gi|262403250|ref|ZP_06079810.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
 gi|262350749|gb|EEY99882.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
          Length = 412

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 118/277 (42%), Gaps = 23/277 (8%)

Query: 300 GDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GSGKTL   + +   ++     QA+++ P   LA Q  E +       ++    + G
Sbjct: 44  ANTGSGKTLAYGLPLLERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTPLELNTLCLCG 103

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALF---QDSIQYYKLILVIVDEQHRFGVQQRLKL 414
            + +  ++ AL   A     ++  T  LF   Q  +   ++  +++DE  R        L
Sbjct: 104 GVDKTEQQNAL---AENPTILVATTGRLFDLTQSGLSLNRVSTLVLDEADR--------L 152

Query: 415 TQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                 P V  L + T   R  V+ S    D  K+  +     P +    P N I++ ++
Sbjct: 153 LDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMHAPTQVSANPENSINQAVQ 212

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSSIAI---IHGRMSD 527
               ++++G K   +   +++ +      F    E  +SL +    +  +   +HG  S 
Sbjct: 213 ETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGVVATALHGDKSQ 272

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            ++E+ +  FKNG+ ++LIAT ++  GI +    ++I
Sbjct: 273 TEREAALAEFKNGSTQVLIATDLLARGIHIEQLPVVI 309


>gi|260556269|ref|ZP_05828488.1| primosomal protein N [Acinetobacter baumannii ATCC 19606]
 gi|260410324|gb|EEX03623.1| primosomal protein N [Acinetobacter baumannii ATCC 19606]
          Length = 742

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +  + Q+ A + +L    Q    L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 202 LAQMPLTLNEDQKKATQHVLNAQHQYQAFL--LDGLTGSGKTEVYLHIMHEVLKQGKQVL 259

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F  ++  +    + ++   +  + R +A ++   G+A II+GT +
Sbjct: 260 VLVPEIGLTPQTISRFKSRFNCD----IALLHSGLNDSKRLQAWQQAQTGKASIILGTRS 315

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                +   +L L+I+DE+H    +Q+
Sbjct: 316 AIYTPLP--RLGLIILDEEHDLSYKQQ 340


>gi|187960121|ref|NP_001120807.1| nucleolar RNA helicase 2 [Danio rerio]
 gi|169642686|gb|AAI60629.1| Ddx21 protein [Danio rerio]
          Length = 759

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 138/331 (41%), Gaps = 45/331 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    + +   +++G Q          +++AP   LA Q  +  K  T+ 
Sbjct: 207 IGQARTGTGKTFSFAVPLVEKLQSGDQERRRGRPPKVLVLAPTRELAIQVTKDFKDITR- 265

Query: 348 TQIIVEIITGNM---PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VI 399
            ++ V    G     PQ      ++ I  G   +++GT    +D +Q  KL L     V+
Sbjct: 266 -KLSVTCFYGGSSYNPQ------IDAIRSG-IDVLVGTPGRIRDHLQNNKLDLSQLQHVV 317

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMT----ATPIPRTLVLTSLGDIDISKITEKPAGR 455
           +DE     V Q L +        +L  +    A   P+TL+ ++     +  + +K    
Sbjct: 318 LDE-----VDQMLDMGFAEQVEEILSASYKKDAEQKPQTLLFSATCPSWVYDVAKKYMRS 372

Query: 456 KPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV------ERF 507
           + I   +I     +    +E L +     ++A  I   I+    S+ R++V      E  
Sbjct: 373 QFIHVDLIGKKTQKAATTVEHLAIACHWSQRASVIGDVIQVYSGSHGRTIVFCETKKEAT 432

Query: 508 N-SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             SL+     S   +HG +    +E  +  F+NG+ ++L+AT V   G+D+ +  ++I  
Sbjct: 433 ELSLNTSIKQSAQSLHGDIPQKQREVTLKGFRNGSFEVLVATNVAARGLDIPEVDLVIQS 492

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +  +   + +H+  GR GR      CI  Y 
Sbjct: 493 SPPNDVESYIHR-SGRTGRAGRTGICICFYQ 522


>gi|320580361|gb|EFW94584.1| eukaryotic initiation factor 4A [Pichia angusta DL-1]
          Length = 381

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 128/286 (44%), Gaps = 36/286 (12%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   G+GKT    I+    ++      QA+I+AP   LA Q  + +     +  + V   
Sbjct: 50  QAQSGTGKTATFTISALQRIDEKLKKTQALILAPTRELALQIQKVVLAIGMHLDLTVHAS 109

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--YYK------LILVIVDEQHRFG 407
            G        +AL       A I++GT     D I+  Y+K       I+   DE    G
Sbjct: 110 IGGKAVQEDMEAL----RNGAQIVVGTPGRVYDMIERGYFKTDAIKMFIMDEADEMLSSG 165

Query: 408 VQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            ++++    +   T   V+L++AT +P+          D+ ++T K   R P++ ++   
Sbjct: 166 FKEQIYNVFRFLPTTTQVVLLSAT-MPQ----------DVLEVTTKFM-RNPVRILVKKD 213

Query: 466 NRIDEVIERLKVVLSEGKKAY-WICP---QIEEKKESNFRSVVERFNSLHEHFTS---SI 518
               E I++  + + E +  +  +C     I   +   F +   +  +L +  T    ++
Sbjct: 214 ELTLEGIKQFYIDVDEEQYKFDCLCDLYDSISVTQAVIFCNTRRKVETLTQQLTENNFTV 273

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           + IH  +S  D++++M+ F+ G+ ++LI+T ++  GIDV   S++I
Sbjct: 274 SAIHSDLSQQDRDTIMNEFRTGSSRILISTDLLARGIDVQQVSLVI 319


>gi|215741236|dbj|BAG97731.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 478

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 145/338 (42%), Gaps = 55/338 (16%)

Query: 302 VGSGKTLV-ALIAMAAAVEAGG------------------QAVIMAPIGILAQQHYEFIK 342
            GSGKT    L  ++  V AGG                  +A+++AP   LA Q  E  K
Sbjct: 6   TGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAKPRALVLAPTRELAAQINEEAK 65

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL----- 397
           K++  T + V +  G  P  ++ + LER     A I++ T     D ++  K+ L     
Sbjct: 66  KFSFQTGLRVVVAYGGTPMYNQLRDLER----GADILVATPGRLVDMVERSKVSLEAIKY 121

Query: 398 VIVDEQHRF---GVQQRL-KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +++DE  R    G + ++ K+ ++   P         + +T++ ++    +I ++     
Sbjct: 122 LVMDEADRMLDMGFEPQIRKIVERMNMPR------KSVRQTMLFSATFPPEIQRLASDFL 175

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER------- 506
                 TV    +  D +++++++ LS+G+K  ++   ++ +      S +++       
Sbjct: 176 SNYIFITVGRVGSSTDLIMQKVEL-LSDGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFV 234

Query: 507 -----FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                 +SL     S       IHG  +  ++ES + SFK G   +++AT V   G+DV 
Sbjct: 235 ETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVP 294

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           + + +I  +        +H++ GR GR  +  S    +
Sbjct: 295 NVAHVINYDLPKSIEDYVHRI-GRTGRAGKAGSATAFF 331


>gi|115468814|ref|NP_001058006.1| Os06g0602400 [Oryza sativa Japonica Group]
 gi|113596046|dbj|BAF19920.1| Os06g0602400 [Oryza sativa Japonica Group]
          Length = 484

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 145/338 (42%), Gaps = 55/338 (16%)

Query: 302 VGSGKTLV-ALIAMAAAVEAGG------------------QAVIMAPIGILAQQHYEFIK 342
            GSGKT    L  ++  V AGG                  +A+++AP   LA Q  E  K
Sbjct: 12  TGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAKPRALVLAPTRELAAQINEEAK 71

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL----- 397
           K++  T + V +  G  P  ++ + LER     A I++ T     D ++  K+ L     
Sbjct: 72  KFSFQTGLRVVVAYGGTPMYNQLRDLER----GADILVATPGRLVDMVERSKVSLEAIKY 127

Query: 398 VIVDEQHRF---GVQQRL-KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +++DE  R    G + ++ K+ ++   P         + +T++ ++    +I ++     
Sbjct: 128 LVMDEADRMLDMGFEPQIRKIVERMNMPR------KSVRQTMLFSATFPPEIQRLASDFL 181

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER------- 506
                 TV    +  D +++++++ LS+G+K  ++   ++ +      S +++       
Sbjct: 182 SNYIFITVGRVGSSTDLIMQKVEL-LSDGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFV 240

Query: 507 -----FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                 +SL     S       IHG  +  ++ES + SFK G   +++AT V   G+DV 
Sbjct: 241 ETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVP 300

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           + + +I  +        +H++ GR GR  +  S    +
Sbjct: 301 NVAHVINYDLPKSIEDYVHRI-GRTGRAGKAGSATAFF 337


>gi|90579695|ref|ZP_01235504.1| ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90439269|gb|EAS64451.1| ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 455

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 145/342 (42%), Gaps = 42/342 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           SPT  QE AI   L   + KN M        G+GKT   ++ +   ++ G +       A
Sbjct: 23  SPTPIQEKAIPVAL---TGKNLMA---AAQTGTGKTAGFVLPILQMLDDGTKVRAKRIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP-QAHRRKALERIAHGQAHIIIGTH 383
           +I+AP   LA Q  + IK+Y+++  +    + G +  +  +R+ +E +      I++ T 
Sbjct: 77  LILAPTRELAVQVEDNIKQYSKHLNLTSMAMYGGVDYEPQKRRLIEGV-----DILVATP 131

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     +I +  + ++++DE  R      ++   K       ++   P+ R  +L 
Sbjct: 132 GRLLDMYTKRAIHFDAIEILVLDEADRMLDMGFIEDINK-------IVERLPVDRQNMLF 184

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +   K A R PI+  +      D  I++  V + +  K+  +   I+E+K  
Sbjct: 185 SATLSDQVRFLAKTAVRNPIEISVAKDASADPKIDQWLVTVDKDMKSALLSHLIQEQKWD 244

Query: 499 NFRSVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +E  +   +  T       S    H   S   +  +++ FKNG  + LIAT V  
Sbjct: 245 QALIFIETKHGAAKLVTQLEKRGISAESFHSGRSQAVRSQLLEDFKNGKLQYLIATGVAS 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
            GID+   + ++  +        +H++ GR GR    GE IS
Sbjct: 305 RGIDIEQLTRVVNYDLPFPPEEYVHRI-GRTGRAGASGEAIS 345


>gi|78213173|ref|YP_381952.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
 gi|78197632|gb|ABB35397.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
          Length = 607

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 131/319 (41%), Gaps = 35/319 (10%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + +   +E+G    QA+++AP   LA Q  E  K Y+     + V  
Sbjct: 100 QAQTGTGKTAAFALPLLERLESGQKTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLA 159

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRF 406
           + G      +  AL R       +++GT     D ++           L+L   DE  R 
Sbjct: 160 VYGGTDFRSQISALRR----GVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRM 215

Query: 407 GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRKPIKT 460
           G    ++  L Q      V+L +AT  P    L+     D +++T    ++   R   ++
Sbjct: 216 GFIDDVEWILDQLPEQRQVVLFSATMPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRS 275

Query: 461 VIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + +P+    E ++R L    SEG   +           +  +++        E     +A
Sbjct: 276 ITVPMPHKLEALQRVLDACGSEGVIIF-----------ARTKAITLTVAETLEAGGHQVA 324

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           +++G +    +E  ++  ++G+  +L+AT V   G+DV    ++I  +      A +H++
Sbjct: 325 VLNGDVPQNQRERTVERLRSGSVDILVATDVAARGLDVERIGLVINYDMPFDSEAYVHRI 384

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       +L   P
Sbjct: 385 -GRTGRAGRTGEAVLFVTP 402


>gi|325959925|ref|YP_004291391.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
           sp. AL-21]
 gi|325331357|gb|ADZ10419.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. AL-21]
          Length = 529

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 136/310 (43%), Gaps = 41/310 (13%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQII-VEI 354
           Q   G+GKT    I +   V+      QAVI+ P   LA Q  E +KK ++  + I +  
Sbjct: 47  QAQTGTGKTAAFGIPILETVDPSNRDLQAVILCPTRELAIQVAEEMKKLSKYMRKIGILP 106

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRF 406
           + G  P   + KAL++       IIIGT     D ++           LIL   DE    
Sbjct: 107 VYGGQPIERQIKALKK----GVQIIIGTPGRVMDHMRRGTIDMGSVKMLILDEADEMLDM 162

Query: 407 GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI-KTVII 463
           G ++ ++  L        +LL +AT  P  L +T        +  E P   K + K + +
Sbjct: 163 GFREDIEFVLDYIPDERQILLFSATMSPDILYITR-------RYQESPEFLKVVPKELTV 215

Query: 464 P-INRID-EVIERLKV-VLSEGKKAYWICPQIEEKKES-NFRSVVERFNSLHEHFT---S 516
           P I +I  EV E++K+ VLS           I + K S  F +   R + L  H      
Sbjct: 216 PEIKQIYFEVKEKMKLDVLSR-------LLDINDFKLSLVFCNTKRRVDKLVNHLQIRGY 268

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           +   +HG MS   +++VM  F++G  ++L+AT V   GIDV +   +   +  +     +
Sbjct: 269 AADGLHGDMSQRQRDNVMSKFRSGNIEILVATDVAARGIDVDNVEAVFNFDVPNDDEYYV 328

Query: 577 HQLRGRVGRG 586
           H++ GR GR 
Sbjct: 329 HRI-GRTGRA 337


>gi|325287711|ref|YP_004263501.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324323165|gb|ADY30630.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 450

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 147/344 (42%), Gaps = 38/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA----MAAAVEAGGQAVIM 327
           +PT  Q+ A   +   MS K+ M+ I Q   G+GKT   ++     +A + +   + +I+
Sbjct: 24  TPTPIQKEAFPVV---MSGKD-MIGIAQ--TGTGKTFAYMLPILQDLAFSKQKNPRVLIL 77

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH------GQAHIIIG 381
            P   L  Q  E I  + +   + V  + G      + +A+ + +       G+ + ++ 
Sbjct: 78  VPTRELVLQVVEQINSFAKYINVRVMGVYGGTNMNTQAQAVSQGSDIIVATPGRLYDLVL 137

Query: 382 THALFQDSIQYYKLIL----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             AL   SI+  KL++    V++D   RF +    +L    T    ++ +AT       L
Sbjct: 138 ARALQLKSIK--KLVIDEVDVMLDLGFRFQITNIFELL--PTRRQNIMFSATMTDDVETL 193

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +   I+  K++   +G         P++ I +    +    ++      +    E  K+
Sbjct: 194 INDFFINPEKVSIAVSG--------TPLDNISQTCYAVPNFYTKANLLVHLLKDKETYKK 245

Query: 498 -----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +N R     FNSL E F+  + +IH   +   +   ++ F  G  ++L+ T V+ 
Sbjct: 246 VLVFVANKRFADRLFNSLEEIFSDELCVIHSNKTQNYRIRSINQFDEGINRILVTTDVMA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            G+D+   S +I  +   F    +H++ GR GR EE  + IL Y
Sbjct: 306 RGLDLDKISHVINFDTPTFPENYMHRI-GRTGRAEEQGNSILFY 348


>gi|221197472|ref|ZP_03570519.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M]
 gi|221204145|ref|ZP_03577163.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2]
 gi|221176311|gb|EEE08740.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2]
 gi|221184026|gb|EEE16426.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M]
          Length = 464

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 139/315 (44%), Gaps = 30/315 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ + ++A     QA+I+ P   LA Q  + +++  +  + + V
Sbjct: 48  IAQAKTGSGKTAAFSLALLSRLDARRFDVQAMILCPTRELADQVAQEVRRLARAEENVKV 107

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFG 407
             + G  P   + ++LE   HG AHI++GT     D     ++Q   L  +++DE  R  
Sbjct: 108 LTLCGGTPMRPQAQSLE---HG-AHIVVGTPGRIMDHLDRGNLQLDALNTLVLDEADRML 163

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K      +     P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 164 DMGFFDDIAK------VARQCPPTRQTLLFSATYPDGIAKLSQQFL-RNP-KEVKLEERH 215

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 216 DDSKIRQRFYEVTETERLHAVGMLLNHYRPVSTIAFCNTKQQCRDLIDVLHAQGFHALAL 275

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 276 -HGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI- 333

Query: 581 GRVGRGEEISSCILL 595
           GR GR ++    + L
Sbjct: 334 GRTGRADQAGWALSL 348


>gi|238493219|ref|XP_002377846.1| RNA helicase (Dbp), putative [Aspergillus flavus NRRL3357]
 gi|317157028|ref|XP_001826178.2| ATP-dependent RNA helicase dbp2 [Aspergillus oryzae RIB40]
 gi|220696340|gb|EED52682.1| RNA helicase (Dbp), putative [Aspergillus flavus NRRL3357]
          Length = 556

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 145/343 (42%), Gaps = 53/343 (15%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +++AP   LA Q    I K+ ++++I  
Sbjct: 177 ETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRN 236

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR-- 405
             + G +P+  + + L R       + I T     D ++       ++  +++DE  R  
Sbjct: 237 TCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRML 292

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
              F  Q R  ++Q           AT P  +   A+      +  ++G +D+S   +IT
Sbjct: 293 DMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRIT 352

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           +       I  V+    + D++I+ L K++ + G K            E      + RF 
Sbjct: 353 Q-------IVEVVSDFEKRDKMIKHLEKIMENRGNKCLIFTGTKRIADE------ITRF- 398

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D + ++  + 
Sbjct: 399 -LRQDGWPALSI-HGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDY 456

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            +     +H++ GR GR     + I  +    SK +   +++L
Sbjct: 457 PNNSEDYVHRI-GRTGRAGAKGTAITFFTTDNSKQARDLVTIL 498


>gi|254486145|ref|ZP_05099350.1| ATP-dependent rna helicase, dead/deah box family [Roseobacter sp.
           GAI101]
 gi|214043014|gb|EEB83652.1| ATP-dependent rna helicase, dead/deah box family [Roseobacter sp.
           GAI101]
          Length = 717

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 133/323 (41%), Gaps = 60/323 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  +         AG   A+++AP   LA Q    +      
Sbjct: 35  LVSAQTGSGKTVGFGLAIAPTLLGESETFGHAGAPLALVIAPTRELAMQVSRELTWLYGP 94

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
              +V    G M     R+AL+R     AH+++ T     D I+   + L     V++DE
Sbjct: 95  AGAVVTTCVGGMDTRTERRALDR----GAHVVVATPGRLCDHIKRNNINLNDIRAVVLDE 150

Query: 403 QHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
                  G ++ L+  L++       LL +AT +P  +         ++K  ++ A R  
Sbjct: 151 ADEMLDLGFREELEFILSEAPEDRRTLLFSAT-VPAAIA-------KLAKSYQRNAQR-- 200

Query: 458 IKTV---------------IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           ++T+               + P +  + +I  L+    E K A   C         N R+
Sbjct: 201 VETIGEAKQHTDIEYRALTVHPRDTENAIINVLR--FYEAKNAIVFC---------NTRA 249

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            V R  +   +   S+  + G +S  ++ + + + ++G  ++ IAT V   GID+ +  +
Sbjct: 250 AVARLTTRFTNRGFSVVALSGELSQSERTNALQALRDGRARVCIATDVAARGIDLPNLEL 309

Query: 563 IIIENAEHFGLAQLHQLRGRVGR 585
           +I  +        LH+  GR GR
Sbjct: 310 VIHADLPSNSDTLLHR-SGRTGR 331


>gi|213155808|ref|YP_002317853.1| primosomal protein N` [Acinetobacter baumannii AB0057]
 gi|301347516|ref|ZP_07228257.1| primosomal protein N` [Acinetobacter baumannii AB056]
 gi|301596761|ref|ZP_07241769.1| primosomal protein N` [Acinetobacter baumannii AB059]
 gi|213054968|gb|ACJ39870.1| primosomal protein N` [Acinetobacter baumannii AB0057]
          Length = 742

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +  + Q+ A + +L    Q    L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 202 LAQMPLTLNEDQKKATQHVLNAQHQYQAFL--LDGLTGSGKTEVYLHIMHEVLKQGKQVL 259

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F  ++  +    + ++   +  + R +A ++   G+A II+GT +
Sbjct: 260 VLVPEIGLTPQTISRFKSRFNCD----IALLHSGLNDSKRLQAWQQAQTGKASIILGTRS 315

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                +   +L L+I+DE+H    +Q+
Sbjct: 316 AIYTPLP--RLGLIILDEEHDLSYKQQ 340


>gi|126274138|ref|XP_001387431.1| RNA helicase involved in maturation of 18S rRNA [Scheffersomyces
           stipitis CBS 6054]
 gi|146286171|sp|A3GFV3|FAL1_PICST RecName: Full=ATP-dependent RNA helicase FAL1
 gi|126213301|gb|EAZ63408.1| RNA helicase involved in maturation of 18S rRNA [Pichia stipitis
           CBS 6054]
          Length = 399

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 144/351 (41%), Gaps = 77/351 (21%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P+  Q  AI  I+      N    I Q   G+GKT    I M  A++      QA+I++
Sbjct: 48  APSAIQSRAIMQII------NGRDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILS 101

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +K       I      G     H    ++++  GQ  I+ GT     D
Sbjct: 102 PTRELAVQIQNVVKHLGDYMNIHTHACIGG---THVGDDIKKLKQGQ-QIVSGTPGRVVD 157

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLM--TATPIPRTLVLT 438
            ++  +L        IL   DE    G ++++    K   P V ++  +AT     L +T
Sbjct: 158 MVKRQQLSTRNIKMLILDEADELFTKGFKEQIYEVYKYLPPSVQVVVVSATLSREVLEMT 217

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI-CPQIEEKKE 497
           +       K T  P               +  +++R ++ L EG K Y + C    EK++
Sbjct: 218 N-------KFTTDP---------------VKILVKRDQITL-EGIKQYHVQC----EKED 250

Query: 498 SNFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVM 534
             F ++ + +++L                        ++FT  +  +HG M   +++S+M
Sbjct: 251 WKFDTLCDLYDNLTITQAVIFCNTKLKVNWLTDQMRKQNFT--VVSMHGDMKQDERDSIM 308

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           + F+ G  ++LI+T V   GIDV   S++I  +        +H++ GR GR
Sbjct: 309 NDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRI-GRSGR 358


>gi|158320015|ref|YP_001512522.1| ATP-dependent DNA helicase RecQ [Alkaliphilus oremlandii OhILAs]
 gi|158140214|gb|ABW18526.1| ATP-dependent DNA helicase RecQ [Alkaliphilus oremlandii OhILAs]
          Length = 745

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 131/319 (41%), Gaps = 46/319 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G GK+L   I    A+   G A++++P+  L +   + +    Q   I    I  ++  
Sbjct: 40  TGGGKSLCYQIP---AMIMDGTAIVVSPLISLMKDQVDTL----QQMGIPAAFINSSLAF 92

Query: 362 AHRRKALERIAHGQAHII-IGTHAL----FQDSIQYYKLILVIVDEQH---RFG-----V 408
           +  ++  E    G+  ++ +    L    F + I+  K+ +V VDE H   R+G      
Sbjct: 93  SESQRIFEEAKRGEYKLLYVAPERLESEGFTELIRSIKISMVAVDEAHCVSRWGHDFRPS 152

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD-IDISKITEKPAG--RKPIKTVIIPI 465
             R+K  +  +  H +L   T    + V   + D I +    E   G  R+ +K  ++  
Sbjct: 153 YLRIKNLRSLSEDHPVLAAFTATATSEVKEDIIDLIGLEGPYEITTGFDRENLKFEVV-- 210

Query: 466 NRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
            R+ E +  +   +SE  GK     C   +  ++     V   FN++           H 
Sbjct: 211 -RVKEKLSYILKYVSEHKGKAGIIYCLTRKLTEQVCSELVRAGFNAIQ---------YHA 260

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQL 579
            + D+ +    D F     ++++AT    +GID +D   +I     H+ + Q     +Q 
Sbjct: 261 GLGDVQRSKNQDDFLFDNAEIMVATNAFGMGIDKLDIRYVI-----HYNMPQNIEAYYQE 315

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR  E S CILL+ P
Sbjct: 316 AGRAGRDGEPSECILLFSP 334


>gi|113970779|ref|YP_734572.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885463|gb|ABI39515.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 449

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 141/366 (38%), Gaps = 75/366 (20%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL-------IAMAAAVEAGGQA 324
           +PT  QE A+   L   + K+ M        GSGKTL  L       I+  A  +   + 
Sbjct: 23  TPTAIQEQALPIAL---AGKDLMA---SSKTGSGKTLAFLLPALQRVISTRALSKRDPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q Y  ++    NTQ     + G      + KAL +    + H I+ T  
Sbjct: 77  LILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAK----EPHFIVATPG 132

Query: 385 LFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLTQKATAPH----VLLMTATPIP 432
              D ++   L L     +++DE  R    G   +LK    A A H     L+ +AT   
Sbjct: 133 RIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAIN-AAADHKRRQTLMFSAT--- 188

Query: 433 RTLVLTSLGDIDISKITEKPAG--RKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWIC 489
                     +D S+I E  A   + P    I   +    ++ +R+           ++C
Sbjct: 189 ----------LDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRI-----------YLC 227

Query: 490 PQIEEKKE-----------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
             ++ K+                  +  R+  ER  S       + A + G +    +  
Sbjct: 228 DHLDHKEALLTRLLSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQ 287

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +MD F  G  ++L+ T V   G+D+++ S++I  +   F    +H++ GR GR       
Sbjct: 288 IMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDA 346

Query: 593 ILLYHP 598
           I L  P
Sbjct: 347 ISLVGP 352


>gi|323498085|ref|ZP_08103089.1| primosome assembly protein PriA [Vibrio sinaloensis DSM 21326]
 gi|323316796|gb|EGA69803.1| primosome assembly protein PriA [Vibrio sinaloensis DSM 21326]
          Length = 733

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 144/387 (37%), Gaps = 90/387 (23%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   +E G QA+++ P IG+  Q    F K++     + VE+I
Sbjct: 221 LLEGVTGSGKTEVYLNLIKPVLEKGRQALVLVPEIGLTPQTINRFKKRFN----VPVEVI 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +  + R  A        A I+IGT +       ++ L ++IVDE+H    +Q+  L 
Sbjct: 277 HSGLNDSERLNAWLSARDNAAGIVIGTRSALL--TPFHDLGIIIVDEEHDSSYKQQDSLR 334

Query: 416 QKATAPHVL----------LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
             A    V+          L +ATP   TL    +G      ++++     P    ++ I
Sbjct: 335 YHARDVAVMRANKEQIPIVLGSATPALETLHNALVGKYHHLVLSKRAGSATPTTNKVLDI 394

Query: 466 NRI-------DEVIERLKVVLSEGKKAYWI--------------CPQIEEKKESN-FRSV 503
             +         +I  ++  L  G +                  C  I E K  + + + 
Sbjct: 395 KGLYLESGLSAPLIAEMRRHLQAGNQVMLFLNRRGFSPALMCHECGWIAECKRCDAYYTY 454

Query: 504 VERFNSLHEHFTSS----IAIIHGRMSD---------------------------IDKES 532
            +  N +  H   S    I   HG  S                            ID++S
Sbjct: 455 HQNSNEIRCHHCGSQQPIIHQCHGCGSTHLVTVGVGTEQLETQLANLFPDYKAIRIDRDS 514

Query: 533 V---------MDSFKNGTCKLLIATTVIE----------VGIDVVDASIIIIENAEHFGL 573
                     + + +NG  ++LI T ++           VG+  VD S+   +      L
Sbjct: 515 TRRKGSLESALSAIRNGEYQILIGTQMLAKGHHFPDVTLVGLLDVDGSLYSSDFRASERL 574

Query: 574 AQLH-QLRGRVGRGEEISSCILLYHPP 599
           AQL  Q+ GR GR  +    IL  H P
Sbjct: 575 AQLFIQVAGRAGRASKPGEVILQTHHP 601


>gi|330834640|ref|YP_004409368.1| DEAD/DEAH box helicase domain-containing protein [Metallosphaera
           cuprina Ar-4]
 gi|329566779|gb|AEB94884.1| DEAD/DEAH box helicase domain-containing protein [Metallosphaera
           cuprina Ar-4]
          Length = 348

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 139/341 (40%), Gaps = 52/341 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
           PTK QE  I  ++   S       I+Q   GSGKT   LI +   +E     +I+ P   
Sbjct: 21  PTKVQELTIPVLMSGKSV------IVQAKTGSGKTASYLIPV---LEREEDTLILTPTRE 71

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD---- 388
           LA Q     K+  +  ++ + +I G +    + +         + II+GT     D    
Sbjct: 72  LADQVAYEAKRLGKYKRMSIGVIIGGVGYEKQER------ESNSDIIVGTPGRILDLWGK 125

Query: 389 -SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG--- 441
             +   +  + +VDE  R    G  + +++    T   +    +  +P  +   + G   
Sbjct: 126 GVLDLARFKVAVVDEVDRMLDMGFIEDVRMILSKTDADLFGFFSATVPSEVKKLAEGFAR 185

Query: 442 DIDISKITE-KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           D    K+ E KP     I+    P+   D   E++  VL + K    +    + + E+ +
Sbjct: 186 DASFLKVDEYKPV---EIEHEFYPVR--DNWNEKVYNVLKDAKSKTIVFTNTKSRAEALY 240

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             V +R          +++++HG MS   +   + +F+ G   +LI+T +   GIDV+D 
Sbjct: 241 DRVSDRL---------TVSLLHGDMSQGARRRNLMNFRKGYSDVLISTDLAARGIDVIDV 291

Query: 561 SIIIIENAEHFGLAQ-----LHQLRGRVGRGEEISSCILLY 596
             +I     +F L +     +H++ GR GR       I  Y
Sbjct: 292 EQVI-----NFDLPRDLDTYIHRV-GRTGRLGRTGRAISYY 326


>gi|323355122|gb|EGA86952.1| Dbp3p [Saccharomyces cerevisiae VL3]
          Length = 537

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 142/321 (44%), Gaps = 37/321 (11%)

Query: 300 GDVGSGKTL---VALIA--MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            + GSGKT    V  I+  M    + G Q ++++P   LA Q Y+ +   T    +    
Sbjct: 156 AETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCC 215

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF--- 406
           + G +P+  +R  L++     + +++ T     D     S+   ++  +++DE  R    
Sbjct: 216 VYGGVPKDEQRIQLKK-----SQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEK 270

Query: 407 GVQQRLK---LTQKATAPHVLLMTATPIP---RTLVLTSLGD---IDISKITEKPAGRK- 456
           G ++ +K       A+    L+ TAT  P   R L  T + +   + I    +  A ++ 
Sbjct: 271 GFEEDIKNIIRETDASKRQTLMFTAT-WPKEVRELASTFMNNPIKVSIGNTDQLTANKRI 329

Query: 457 -PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             I  V+ P  +  +++E LK   S  KK   +      KKE+   + VER N  +  + 
Sbjct: 330 TQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEA---ARVER-NLKYNGY- 384

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            ++A IHG +S   +   ++ FK+G   LL+AT V   G+D+ +   +I           
Sbjct: 385 -NVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDY 443

Query: 576 LHQLRGRVGRGEEISSCILLY 596
           +H++ GR GR  +  +   L+
Sbjct: 444 VHRI-GRTGRAGQTGTAHTLF 463


>gi|306840535|ref|ZP_07473294.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2]
 gi|306289550|gb|EFM60768.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2]
          Length = 549

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 35/293 (11%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 176 RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 231

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 232 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 283

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P       I ++   +   +K   +   +  
Sbjct: 284 -LFSATMPKEIASLAERLL-RDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAML-- 339

Query: 495 KKESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             +++ RSV+    + H         E     +A IHG  S   ++  ++ F++GT ++L
Sbjct: 340 -TDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRIL 398

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 399 VATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 450


>gi|260545280|ref|ZP_05821021.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260754789|ref|ZP_05867137.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260758012|ref|ZP_05870360.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260761835|ref|ZP_05874178.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883806|ref|ZP_05895420.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|261214040|ref|ZP_05928321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|260096687|gb|EEW80562.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260668330|gb|EEX55270.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260672267|gb|EEX59088.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260674897|gb|EEX61718.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260873334|gb|EEX80403.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|260915647|gb|EEX82508.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
          Length = 458

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 89  RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 144

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 145 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 196

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 197 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 244

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 245 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 304

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 305 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 363


>gi|158424139|ref|YP_001525431.1| helicase [Azorhizobium caulinodans ORS 571]
 gi|158331028|dbj|BAF88513.1| helicase [Azorhizobium caulinodans ORS 571]
          Length = 582

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 139/346 (40%), Gaps = 42/346 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI  +L     +  +L + Q   G+GKT    + M   +E G       + +
Sbjct: 86  TPTPIQAQAIPHVLA----RRDVLGLAQ--TGTGKTAAFTLPMLTLLEQGRARARMPRTL 139

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   +Y +N ++ V ++ G +    +   L R       ++I T   
Sbjct: 140 ILEPTRELAAQVEENFVRYGKNHKLNVALLIGGVSFGDQDTKLLR----GVDVLIATPGR 195

Query: 386 FQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPR 433
             D ++  +L+L     +++DE  R         +++  KL            T  P  +
Sbjct: 196 LLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFSATMPPEIQ 255

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKVVLSEG---KKAYWIC 489
            LV   L +    ++++  +    I  +++   R D E  E L+ ++      +     C
Sbjct: 256 RLVSQFLSNPVRVEVSKPASANTSITQLLVASGREDYEKRETLRELIRNADQLQNGIVFC 315

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   +  R V     SL +H   ++  +HG M    +   +D F+ G   LL+A+ 
Sbjct: 316 --------NRKRDVAVVHRSLQKH-GFNVVCLHGDMDQHARTQALDQFRTGEATLLVASD 366

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           V   G+D+   S +   +  H     +H++ GR GR     + I+L
Sbjct: 367 VAARGLDIPAVSHVFNYDVPHHSEDYVHRI-GRTGRAGRTGTAIML 411


>gi|193076207|gb|ABO10828.2| ATP-dependent primosomal protein N' [Acinetobacter baumannii ATCC
           17978]
          Length = 742

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +  + Q+ A + +L    Q    L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 202 LAQMPLTLNEDQKKATQHVLNAQHQYQAFL--LDGLTGSGKTEVYLHIMHEVLKQGKQVL 259

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F  ++  +    + ++   +  + R +A ++   G+A II+GT +
Sbjct: 260 VLVPEIGLTPQTISRFKSRFNCD----IALLHSGLNDSKRLQAWQQAQTGKASIILGTRS 315

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                +   +L L+I+DE+H    +Q+
Sbjct: 316 AIYTPLP--RLGLIILDEEHDLSYKQQ 340


>gi|169797377|ref|YP_001715170.1| primosomal protein N' (= factor Y) directs replication fork
           assembly at D-loops, ATP-dependent. [Acinetobacter
           baumannii AYE]
 gi|301511741|ref|ZP_07236978.1| primosomal protein N' (= factor Y) directs replication fork
           assembly at D-loops, ATP-dependent [Acinetobacter
           baumannii AB058]
 gi|169150304|emb|CAM88201.1| primosomal protein N' (= factor Y) directs replication fork
           assembly at D-loops, ATP-dependent [Acinetobacter
           baumannii AYE]
          Length = 742

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +  + Q+ A + +L    Q    L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 202 LAQMPLTLNEDQKKATQHVLNAQHQYQAFL--LDGLTGSGKTEVYLHIMHEVLKQGKQVL 259

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F  ++  +    + ++   +  + R +A ++   G+A II+GT +
Sbjct: 260 VLVPEIGLTPQTISRFKSRFNCD----IALLHSGLNDSKRLQAWQQAQTGKASIILGTRS 315

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                +   +L L+I+DE+H    +Q+
Sbjct: 316 AIYTPLP--RLGLIILDEEHDLSYKQQ 340


>gi|73965241|ref|XP_861914.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 15 [Canis
           familiaris]
          Length = 620

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 136/350 (38%), Gaps = 61/350 (17%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y +  ++   
Sbjct: 140 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKST 199

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 200 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255

Query: 407 -GVQ------------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
            G +                   R  L   AT P  +   A    +  +  ++G +++S 
Sbjct: 256 MGFEPQIRKIVDQIRVSTPKNPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS- 314

Query: 448 ITEKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                A    ++ V +   + + +++I  ++ ++SE           +E K   F     
Sbjct: 315 -----ANHNILQIVDVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKR 358

Query: 506 RFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           R + L             IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   
Sbjct: 359 RCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKF 418

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +I  +  +     +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 419 VINYDYPNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 467


>gi|325846581|ref|ZP_08169496.1| primosomal protein N' [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481339|gb|EGC84380.1| primosomal protein N' [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 792

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 23/196 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q   IK I   M Q N+   +L+G  GSGKT V L  +   ++ G  ++I+ P I +
Sbjct: 259 TAEQNKIIKKI---MDQPNKSY-LLKGVTGSGKTEVFLQIVEENLKKGKDSIILVPEISL 314

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F  ++ Q     + I+   + Q  + +    I +G   I++G   A+F     
Sbjct: 315 TPQTIERFQGRFNQK----IAILHSRLTQKEKFQQWRMIKNGDVKIVVGARSAIFA---P 367

Query: 392 YYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           +  +  +I+DE+H          +F   +     QK     ++  +ATP  +T+     G
Sbjct: 368 FKNIGAIIIDEEHDKSYISSQDPKFHTDELALFRQKYNKATLIFASATPSIKTMTKALNG 427

Query: 442 DIDISKITEKPAGRKP 457
             D+ ++  +  G+ P
Sbjct: 428 QYDLVELKNRVNGKMP 443


>gi|307611190|emb|CBX00835.1| hypothetical protein LPW_25391 [Legionella pneumophila 130b]
          Length = 589

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 150/360 (41%), Gaps = 55/360 (15%)

Query: 279 SAIKDILQDMS-------QKNRMLRILQG-------DVGSGKTLVALIAMAAAVE---AG 321
           SA+   L+DM        Q   +  ILQG         G+GKT    + +   +    + 
Sbjct: 15  SALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNLSPEIST 74

Query: 322 GQAVIMAP---IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            QA+I+AP   + I   + +E + KY +N  + + ++ G      + K L       A +
Sbjct: 75  TQALILAPTRELAIQVAEQFELLSKYQRN--VTIAVLCGGQEYGRQLKQL----RSGAQV 128

Query: 379 IIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTA 428
           ++GT     D I    L        IL   DE  R G  + ++  L +      + L +A
Sbjct: 129 VVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMALFSA 188

Query: 429 TPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEG 482
           T +P   R +  T L D    +I  + A  K I+   +  +   + D +I  L+V   +G
Sbjct: 189 T-MPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVEDYQG 247

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +        + +S+   V E    L +H   ++AI HG ++   +E ++  FK G  
Sbjct: 248 VIVFV-------RTKSSTEEVAE---LLQQHGLRAMAI-HGDITQSLRERIIAQFKQGAI 296

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+DV   + +I  +  H     +H++ GR GR       IL   P  S+
Sbjct: 297 DILVATDVAARGLDVERVTHVINYDMPHDNETYVHRI-GRTGRAGRSGVTILFVTPKESR 355


>gi|332873109|ref|ZP_08441066.1| primosomal protein [Acinetobacter baumannii 6014059]
 gi|322506587|gb|ADX02041.1| priA [Acinetobacter baumannii 1656-2]
 gi|332738621|gb|EGJ69491.1| primosomal protein [Acinetobacter baumannii 6014059]
          Length = 742

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +  + Q+ A + +L    Q    L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 202 LAQMPLTLNEDQKKATQHVLNAQHQYQAFL--LDGLTGSGKTEVYLHIMHEVLKQGKQVL 259

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F  ++  +    + ++   +  + R +A ++   G+A II+GT +
Sbjct: 260 VLVPEIGLTPQTISRFKSRFNCD----IALLHSGLNDSKRLQAWQQAQTGKASIILGTRS 315

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                +   +L L+I+DE+H    +Q+
Sbjct: 316 AIYTPLP--RLGLIILDEEHDLSYKQQ 340


>gi|255731175|ref|XP_002550512.1| eukaryotic initiation factor 4A-12 [Candida tropicalis MYA-3404]
 gi|240132469|gb|EER32027.1| eukaryotic initiation factor 4A-12 [Candida tropicalis MYA-3404]
          Length = 399

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 147/350 (42%), Gaps = 75/350 (21%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P+  Q  AI   +Q +S K+    I Q   G+GKT    I M   ++      QA+I++
Sbjct: 48  APSAIQSRAI---MQIISGKDT---IAQAQSGTGKTATFSIGMLEVIDTKSKECQALILS 101

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +K       I      G        K L++   GQ  I+ GT     D
Sbjct: 102 PTRELATQIQNVVKHLGDYMNIHTHACIGGKNVGDDVKKLQQ---GQ-QIVSGTPGRVLD 157

Query: 389 -----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
                ++Q   + ++I+DE       G ++++    K   P   V++++AT     L +T
Sbjct: 158 VIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPAVQVVVVSATLSREVLEMT 217

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D            P+K ++    + DE+       LS  K+ Y  C    E+++ 
Sbjct: 218 SKFTTD------------PVKILV----KQDEI------SLSGIKQYYVQC----EQEDW 251

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                        ++FT  +  +HG M   ++ES+M+
Sbjct: 252 KFDTLCDLYDNLTITQAVIFCNTKLKVNWLTDQMRKQNFT--VVSMHGDMKQDERESIMN 309

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I  +        +H++ GR GR
Sbjct: 310 DFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRI-GRSGR 358


>gi|261188002|ref|XP_002620418.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis SLH14081]
 gi|239593429|gb|EEQ76010.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis SLH14081]
          Length = 548

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 147/346 (42%), Gaps = 50/346 (14%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +++AP   LA Q    I K+ ++++I  
Sbjct: 175 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRN 234

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR-- 405
             + G +P+  + + L R       + I T     D ++       ++  +++DE  R  
Sbjct: 235 TCVYGGVPKGPQIRDLTR----GVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRML 290

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
              F  Q R  ++Q           AT P  +   A       +  ++G +D+S   +IT
Sbjct: 291 DMGFEPQIRKIVSQIRPDRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRIT 350

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +       I  ++    + D + + L  ++ E K A  +     ++   +    + RF  
Sbjct: 351 Q-------IVEIVSEFEKRDRMAKHLDRIMEENKSAKVLIFTGTKRVADD----ITRF-- 397

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D + ++  +  
Sbjct: 398 LRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYP 456

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +     +H++ GR GR     + I L+    +K +   +S+L  ++
Sbjct: 457 NNSEDYVHRI-GRTGRAGAKGTAITLFTTDNAKQARDLVSILTESK 501


>gi|326203182|ref|ZP_08193048.1| primosomal protein N' [Clostridium papyrosolvens DSM 2782]
 gi|325986828|gb|EGD47658.1| primosomal protein N' [Clostridium papyrosolvens DSM 2782]
          Length = 818

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 109/250 (43%), Gaps = 32/250 (12%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P SPT+ Q +A+  + + +  +N    +L G  GSGKT V L  ++     G +A+++ P
Sbjct: 278 PLSPTEDQANALAFLKKQLDCRNFQETLLHGITGSGKTEVYLQLISHCFLLGKKAILLVP 337

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            I +  Q    F+ ++       V +I   +    R    + I  G+  +++G  +    
Sbjct: 338 EISLTPQMVERFVSRFGNR----VAVIHSKLSLGERFDQWKLIRDGKVDVVVGARSAVFA 393

Query: 389 SIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            ++   L L+++DE+H          R+  +   +   +     ++  +ATP   T    
Sbjct: 394 PME--NLGLIVIDEEHEGSYKSESLPRYNAKDVARKRCEINNCLLVYGSATPSVETYYNA 451

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIP-INRIDEVIERLKVVLSEGKKAYWICPQIEE--- 494
               I + ++  +P      +T ++P +  +D     ++V L  G K  +    +EE   
Sbjct: 452 QTEKIHLLEMQNRP------RTAVLPKVELVD-----MRVELENGNKTPFSSRLVEELLK 500

Query: 495 KKESNFRSVV 504
            KE+N +S++
Sbjct: 501 NKENNQQSIL 510


>gi|260948446|ref|XP_002618520.1| eukaryotic initiation factor 4A [Clavispora lusitaniae ATCC 42720]
 gi|238848392|gb|EEQ37856.1| eukaryotic initiation factor 4A [Clavispora lusitaniae ATCC 42720]
          Length = 396

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 127/299 (42%), Gaps = 62/299 (20%)

Query: 299 QGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   G+GKT    I+    +   E   QA+I+AP   LA Q    I        + V   
Sbjct: 65  QAQSGTGKTATFTISALQNIDVNEKATQALILAPTRELALQIQNVISHIGLYLNVTVHAS 124

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--YYK------LILVIVDEQHRFG 407
            G    +   +A          I++GT     D I+  Y+K       IL   DE    G
Sbjct: 125 IGGTSMSDDIEAF----RSGVQIVVGTPGRVSDMIERRYFKTHKVKMFILDEADEMLSSG 180

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            ++++    KL  + T   V+L++AT +P+          D+ ++T K     P++ ++ 
Sbjct: 181 FKEQIYNIFKLLPETT--QVVLLSAT-MPQ----------DVLEVTTKFMN-NPVRILV- 225

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------------------SNFRSVVE 505
              + DE+         EG K Y+I  + EE K                    N RS VE
Sbjct: 226 ---KKDELT-------LEGIKQYYINVEEEEYKFDCLCDLYDSISVTQAVIFCNTRSKVE 275

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +  +    +++ IH  +   +++++M+ F++G+ ++LI+T ++  GIDV   S++I
Sbjct: 276 NLMAKLKANNFTVSAIHADLPQAERDTIMNEFRSGSSRILISTDLLARGIDVQQVSLVI 334


>gi|86211175|gb|ABC87271.1| vasa-like protein [Macrobrachium rosenbergii]
          Length = 710

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 141/342 (41%), Gaps = 74/342 (21%)

Query: 302 VGSGKTLVALIA-----MAAAVEAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+      MA  V A         +A+I+AP   L  Q +   +K+   T 
Sbjct: 324 TGSGKTAAFLLPILQQLMADGVAASSFVELQEPEAIIVAPTRELINQIFLEARKFAYGTC 383

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQH 404
           +   ++ G +    +   L  I+ G  +I+ GT     D IQ       KL  +++DE  
Sbjct: 384 VRPVVVYGGVNTGFQ---LREISKG-CNIVCGTPGRLLDVIQRGWIGLTKLRYLVLDEAD 439

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK------- 451
           R        +      P +  + A+P +P     +TL+ ++    DI K+          
Sbjct: 440 R--------MLDMGFEPDMRRLVASPGMPPKENRQTLLFSATYPQDIQKLAADFLKTDYL 491

Query: 452 -------PAGRKPIKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
                        ++   + + +    +++++ LK + +E    +     +E K++++F 
Sbjct: 492 FLAVGIVGGACSDVEQTFVQVTKYSKREQLLDFLKTIGNERTMVF-----VETKRQADF- 545

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             +  F    E  T+SI   HG     ++E  +  FK G C +L+AT+V   G+D+ +  
Sbjct: 546 --IATFLCQEELPTTSI---HGDREQREREQALADFKAGKCPILVATSVAARGLDIPEVQ 600

Query: 562 IIIIENAEHFGLAQ-----LHQLRGRVGRGEEISSCILLYHP 598
            ++     +F L +     +H++ GR GR   I   +  Y P
Sbjct: 601 HVV-----NFDLPKNIDEYVHRI-GRTGRCGNIGRAVSFYDP 636


>gi|118082784|ref|XP_416260.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
           [Gallus gallus]
          Length = 655

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 139/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 130 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 187

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 188 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEAGKTNLRRCTYLVL 243

Query: 401 DEQHRF---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G +             R  L   AT P  +   A    +  V  ++G++++
Sbjct: 244 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINVGNLEL 303

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 304 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 345

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 346 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 405

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 406 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 457


>gi|120612642|ref|YP_972320.1| ATP-dependent DNA helicase RecQ [Acidovorax citrulli AAC00-1]
 gi|120591106|gb|ABM34546.1| ATP-dependent DNA helicase, RecQ family [Acidovorax citrulli
           AAC00-1]
          Length = 630

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             E  ++L      S  I HGRM   ++    D F  G  ++++AT    +GID  D   
Sbjct: 257 AAEEVHALLAGAGESAGIYHGRMPAAERGRAQDRFMAGDLRVMVATNAFGLGIDKQDVRF 316

Query: 563 IIIENAEHF----GLAQLHQLRGRVGRGEEISSCILLY 596
           +I     H+    GL   +Q  GR GR  + + C LL+
Sbjct: 317 VI-----HYQMPGGLDAYYQESGRAGRDGQPAECTLLF 349


>gi|19387227|gb|AAL87144.1|AF479825_1 DEAD box RNA helicase Vasa [Oncorhynchus mykiss]
          Length = 396

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 135/342 (39%), Gaps = 64/342 (18%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQA------------VIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+ +   +   G A            +I+AP   L  Q Y   +K+   T 
Sbjct: 6   TGSGKTAAFLLPILQQLMVDGVAASQFSEIQEPEVIIVAPTRELINQIYMEARKFAHGTC 65

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQH 404
           +   ++ G +   H    +  I  G  +++  T     D      I   KL  +++DE  
Sbjct: 66  VRPVVVYGGISTGH---TIREILKG-CNVLCATPGRLMDIIGRGKIGLSKLRYLVLDEAD 121

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK------- 451
           R        +      P +  +  +P IP     +TL+ ++    DI K+          
Sbjct: 122 R--------MLDMGFEPAMRKLVGSPGIPAKEDRQTLMFSATYPEDIQKLAADFLKKDYL 173

Query: 452 -------PAGRKPIKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
                        ++ V++ + +    D+++E LK   SE    +     +E K++++F 
Sbjct: 174 FLAVGVVGGACSDVEQVVVQVTKFSKRDQLLEVLKTTGSERTMVF-----VETKRQADF- 227

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             +  F    +  T+SI   HG     ++E  +  F++G C +L+AT+V   G+D+ D  
Sbjct: 228 --IATFLCREKVNTTSI---HGDREQREREQALGDFRSGRCPVLVATSVAARGLDIKDVQ 282

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
            I+  +  +     +H++ GR GR       +  + P    N
Sbjct: 283 HIVNFDLPNNIDEYVHRI-GRTGRCGNTGRAVCFFDPGADGN 323


>gi|114048006|ref|YP_738556.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889448|gb|ABI43499.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 449

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 141/366 (38%), Gaps = 75/366 (20%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL-------IAMAAAVEAGGQA 324
           +PT  QE A+   L   + K+ M        GSGKTL  L       I+  A  +   + 
Sbjct: 23  TPTAIQEQALPIAL---AGKDLMA---SSKTGSGKTLAFLLPALQRVISTRALSKRDPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q Y  ++    NTQ     + G      + KAL +    + H I+ T  
Sbjct: 77  LILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAK----EPHFIVATPG 132

Query: 385 LFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLTQKATAPH----VLLMTATPIP 432
              D ++   L L     +++DE  R    G   +LK    A A H     L+ +AT   
Sbjct: 133 RIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAIN-AAADHKRRQTLMFSAT--- 188

Query: 433 RTLVLTSLGDIDISKITEKPAG--RKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWIC 489
                     +D S+I E  A   + P    I   +    ++ +R+           ++C
Sbjct: 189 ----------LDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRI-----------YLC 227

Query: 490 PQIEEKKE-----------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
             ++ K+                  +  R+  ER  S       + A + G +    +  
Sbjct: 228 DHLDHKEALLTHLLSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQ 287

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +MD F  G  ++L+ T V   G+D+++ S++I  +   F    +H++ GR GR       
Sbjct: 288 IMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDA 346

Query: 593 ILLYHP 598
           I L  P
Sbjct: 347 ISLVGP 352


>gi|325920710|ref|ZP_08182616.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
 gi|325548762|gb|EGD19710.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
          Length = 643

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 134/322 (41%), Gaps = 41/322 (12%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + +++ A   +   QA+++AP   LA Q  E  +KY +      V  
Sbjct: 52  QAQTGTGKTAAFALPVLSNADLNQLKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLP 111

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF 406
           + G  P A +  AL+R      H+++GT     D +        Q   L+L   DE  R 
Sbjct: 112 VYGGQPYAQQLSALKR----GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRM 167

Query: 407 G----VQQRLK-LTQKATAPHVLLMTAT--PIPRTLVLTSLGD---IDISKITEKPAGRK 456
           G    V+  LK L +K     V L +AT  P  R +  T L D   + I+  T   A  +
Sbjct: 168 GFIDDVEAVLKKLPEKR---QVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIR 224

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
                +  ++++D +   L+V   +G   +           +  ++  E      +    
Sbjct: 225 QRYWWVSGLHKLDALTRILEVEPFDGMIIF-----------ARTKAGTEELAQKLQARGL 273

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           + A I+G M    +E  +   K+G   +L+AT V   G+DV   S ++  +  +   + +
Sbjct: 274 AAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYV 333

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           H++ GR GR       IL   P
Sbjct: 334 HRI-GRTGRAGRTGDAILFVTP 354


>gi|238916652|ref|YP_002930169.1| primosomal protein N (replication factor Y) (superfamily II
           helicase) [Eubacterium eligens ATCC 27750]
 gi|238872012|gb|ACR71722.1| primosomal protein N (replication factor Y) (superfamily II
           helicase) [Eubacterium eligens ATCC 27750]
          Length = 738

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 19/169 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
            K Q+ A+  I+ D  + +    +L G  GSGKT V L A+   +  G QA+++ P I +
Sbjct: 206 NKQQKKAVDTIIADYDKGDYKTYLLHGVTGSGKTEVYLAAIEHVLNHGRQAIVLIPEIAL 265

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F  ++       V I+   M +  R     R   G   ++IG   ALF     
Sbjct: 266 TFQTVQRFYHRFGDK----VSIMNSRMSKGERYDQFLRAQRGDISVMIGPRSALF---TP 318

Query: 392 YYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP 430
           +  + ++I+DE+H          R+  ++      K     V+L +ATP
Sbjct: 319 FSNIGIIIIDEEHEGAYKSETVPRYHAREVACHMAKEAGASVILGSATP 367


>gi|169634523|ref|YP_001708259.1| primosomal protein N' (= factor Y) directs replication fork
           assembly at D-loops, ATP-dependent. [Acinetobacter
           baumannii SDF]
 gi|169153315|emb|CAP02424.1| primosomal protein N' (= factor Y) directs replication fork
           assembly at D-loops, ATP-dependent [Acinetobacter
           baumannii]
          Length = 742

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +  + Q+ A + +L    Q    L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 202 LAQMPLTLNEDQKKATQHVLNAQHQYQAFL--LDGLTGSGKTEVYLHIMHEVLKQGKQVL 259

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F  ++  +    + ++   +  + R +A ++   G+A II+GT +
Sbjct: 260 VLVPEIGLTPQTISRFKSRFNCD----IALLHSGLNDSKRLQAWQQAQTGKASIILGTRS 315

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                +   +L L+I+DE+H    +Q+
Sbjct: 316 AIYTPLP--RLGLIILDEEHDLSYKQQ 340


>gi|152988314|ref|YP_001347045.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150963472|gb|ABR85497.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 441

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 152/368 (41%), Gaps = 65/368 (17%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG- 321
           K L ++ FS PT  Q +AI   L+      R LR+     GSGKT   L+ +   + A  
Sbjct: 13  KALDSLSFSEPTPVQAAAIPQALE-----GRDLRV-TAQTGSGKTAAFLLPLLNRLLAEE 66

Query: 322 -----GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN----MPQAHRRKALERIA 372
                 +A+I+ P   LAQQ  + ++++ Q T I   +ITG     +  A  RK  E   
Sbjct: 67  KPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKNPE--- 123

Query: 373 HGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVL-LM 426
                I+IGT     +      L L     +++DE  R        +     A  VL L 
Sbjct: 124 -----IVIGTPGRLLEQRNAGNLPLQDIEVLVLDEADR--------MLDMGFADDVLALA 170

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAG-RKPIKTV-----IIPINRIDEVIERLKV-VL 479
            A P  R  +L S         T   AG  K I  V     ++ +N++ E+ E ++  V+
Sbjct: 171 NACPAERQTLLFS--------ATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVI 222

Query: 480 SEGKKAY------WICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           +    A+      W+       K    +N R   +R           + ++HG     D+
Sbjct: 223 TADDVAHKEQLLQWLLGNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDR 282

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEI 589
           +  ++  K G  K+L+AT V   G+DV    ++I  +    G   +H++ GR GR G E 
Sbjct: 283 KLAIERLKQGAVKILVATDVAARGLDVEGLDLVINFDMPRSGDEYVHRI-GRTGRAGAEG 341

Query: 590 SSCILLYH 597
            +  L+ H
Sbjct: 342 LAISLICH 349


>gi|71995724|ref|NP_490761.2| hypothetical protein Y65B4A.6 [Caenorhabditis elegans]
 gi|31746585|gb|AAK29954.2| Hypothetical protein Y65B4A.6 [Caenorhabditis elegans]
          Length = 399

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 148/342 (43%), Gaps = 61/342 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AI  IL     K R + I Q   G+GKT    I++  +++      QA+I++P
Sbjct: 49  PSAIQQRAIPAIL-----KARDV-IAQAQSGTGKTATFSISVLQSLDTQVRETQALILSP 102

Query: 330 IGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
              LA Q  + +       N Q    I   N+ +  R+     + +GQ H++ GT     
Sbjct: 103 TRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRK-----LDYGQ-HVVSGTPGRVF 156

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVL 437
           D I+   L        +L   DE    G +++L    +   P   V+L++AT     L +
Sbjct: 157 DMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEM 216

Query: 438 TSLGDIDISKITEK--PAGRKPIKTVIIPINR----IDEVIERLKVV--------LSEGK 483
           TS    D  +I  K      + IK   + ++R     D +I+    +         +  +
Sbjct: 217 TSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRR 276

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           K  W+  ++   KE+NF                +++ +HG M   D++ VM  F+ GT +
Sbjct: 277 KVDWLTDKM---KEANF----------------TVSSMHGDMEQKDRDEVMKEFRAGTTR 317

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +LI+T V   G+DV   S++I  +  +     +H++ GR GR
Sbjct: 318 VLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRI-GRSGR 358


>gi|313227809|emb|CBY22958.1| unnamed protein product [Oikopleura dioica]
          Length = 862

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 138/330 (41%), Gaps = 46/330 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGG-----------QAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            GSGKT   L+ +   +   G           Q +I++P   LA Q Y+  + + ++++I
Sbjct: 381 TGSGKTAAYLLPILNDLMEQGIKAEPAHRQFPQVLIISPTRELAIQIYDQCRLFAKDSRI 440

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHR 405
           + + + G       R   ++I+    +++IGT     D ++       KL   ++DE  R
Sbjct: 441 VAQCLYGG---TDVRFIHQKISESGCNVLIGTPGRINDFLEREYLGLNKLQYFVLDEADR 497

Query: 406 -----FG-VQQRLKLTQKATAP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
                FG + ++L    +   P     L+ +AT  P+T+   +   +D   +        
Sbjct: 498 MLDMGFGPIMKQLATGYRMPRPGKRKTLMFSAT-FPQTIQQFAADFMDSEYLF------- 549

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            IK  ++     D   E L +   E KK+  +   I+E  E+  R++V     +   F +
Sbjct: 550 -IKVGVVGGACADVSQEVLIIGSEESKKSGKLEELIKEVAETRQRTLVFVETKIKADFIA 608

Query: 517 SI--------AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            +          IHG     ++ES +  F++G C +L+AT+V   G+D+ +   +I    
Sbjct: 609 CMLSQTNVPTTSIHGGRLQPERESALADFRSGVCPILVATSVAARGLDIPEVEHVINYEL 668

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                  +H++ GR GR   +      Y P
Sbjct: 669 PREIEEYVHRI-GRTGRCGNLGKSTSFYDP 697


>gi|251793921|ref|YP_003008653.1| primosome assembly protein PriA [Aggregatibacter aphrophilus
           NJ8700]
 gi|247535320|gb|ACS98566.1| primosomal protein N' [Aggregatibacter aphrophilus NJ8700]
          Length = 732

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 26/207 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +  G Q +++ P IG+  Q    F  ++     ++++++
Sbjct: 221 LLDGVTGSGKTEIYLQFIEEILNQGKQVLVLVPEIGLTPQTVSRFQTRFN----VVIDVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
             N+    R    +R   GQ+ +IIGT  ALF    Q+  L  +I+DE+H          
Sbjct: 277 HSNLNDTQRLHVWQRARSGQSAVIIGTRSALF---TQFADLGAIIIDEEHDASFKQQDGW 333

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           R+  +    +  K     VL+ +ATP   +L     G      ++EK      ++  II 
Sbjct: 334 RYHARDLAVVYAKQLNIPVLMGSATPSLESLNNVQQGKYQRLCLSEKANHSTALQQQIID 393

Query: 465 I------NRIDEV-IERLKVVLSEGKK 484
           +      N + E+ ++R++  L +G +
Sbjct: 394 LKHQSMRNGLSEILLKRMQAHLEKGNQ 420


>gi|225011497|ref|ZP_03701935.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
 gi|225004000|gb|EEG41972.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
          Length = 415

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 151/353 (42%), Gaps = 58/353 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQ------ 323
           PT  QE AI  +L+     + +L + Q   G+GKT    + ++         GQ      
Sbjct: 24  PTPIQEQAIPILLKG----HDLLGVAQ--TGTGKTAAFGIPILNHLLKENNSGQGKRKIK 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA Q  E    Y+Q T +   +I G + Q+ +  +L++       I++ T 
Sbjct: 78  ALVVTPTRELAIQIAENFTDYSQFTHLRNTVIFGGVKQSKQVASLQQ----GVDILVATP 133

Query: 384 A-----LFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPH--VLLMTATPIPR 433
                 + Q  I +  L  V++DE  +    G    +K       P+   L  +AT +P+
Sbjct: 134 GRLLDLMNQGYITFRDLKYVVLDEADQMLDMGFIHDVKKIIAKLPPNRQSLFFSAT-MPK 192

Query: 434 TLVLTS---LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           T+V  S   LGD +              +  I P     E +++    +S+  K   +  
Sbjct: 193 TIVELSQKMLGDFE--------------RVTIKPEQATAEKVKQGVYFVSKNNKPNLLIH 238

Query: 491 QIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ++++ + +   F       N + +    +    A IHG  S   ++  +  FK+G+ K+
Sbjct: 239 LLDQRPQDSVLVFSRTKHGANKIVKTLDKAKIKSAAIHGNKSQAQRQKALGEFKDGSLKV 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSCI 593
           LIAT +   GIDV D +++I  +  +     +H++ GR GR    G  +S C+
Sbjct: 299 LIATDIAARGIDVDDLALVINYDLPNVSETYVHRI-GRTGRASASGIALSFCM 350


>gi|215484817|ref|YP_002327052.1| primosomal protein N' [Acinetobacter baumannii AB307-0294]
 gi|332851865|ref|ZP_08433768.1| primosomal protein [Acinetobacter baumannii 6013150]
 gi|332867436|ref|ZP_08437596.1| primosomal protein [Acinetobacter baumannii 6013113]
 gi|213987928|gb|ACJ58227.1| primosomal protein N' [Acinetobacter baumannii AB307-0294]
 gi|332729650|gb|EGJ60986.1| primosomal protein [Acinetobacter baumannii 6013150]
 gi|332733976|gb|EGJ65120.1| primosomal protein [Acinetobacter baumannii 6013113]
          Length = 742

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +  + Q+ A + +L    Q    L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 202 LAQMPLTLNEDQKKATQHVLNAQHQYQAFL--LDGLTGSGKTEVYLHIMHEVLKQGKQVL 259

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F  ++  +    + ++   +  + R +A ++   G+A II+GT +
Sbjct: 260 VLVPEIGLTPQTISRFKSRFNCD----IALLHSGLNDSKRLQAWQQAQTGKASIILGTRS 315

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                +   +L L+I+DE+H    +Q+
Sbjct: 316 AIYTPLP--RLGLIILDEEHDLSYKQQ 340


>gi|114049936|emb|CAK50953.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens]
 gi|114050158|emb|CAK51191.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens]
          Length = 499

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 140/334 (41%), Gaps = 46/334 (13%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  +    +++ P   LAQQ  + +  Y ++ ++ +
Sbjct: 112 RGRTGSGKTLAFGLALLARTAKRRAEARQPLGLVLVPTRELAQQVTDALTPYARSVKLRL 171

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHR-- 405
             + G MP   +  AL     G A I++ T    +D I     +  ++ + ++DE  +  
Sbjct: 172 ATVVGGMPIGRQASALR----GGAEIVVATPGRLKDLITRGDCRLDQVAVTVLDEADQMA 227

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIK 459
              F  Q    L Q       +L +AT + R    LV   L D  +  +         ++
Sbjct: 228 DMGFMPQVTALLDQVRPEGQRMLFSAT-LDRNVDLLVRRYLSDPVVHSVDPSAGAVTTME 286

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517
             ++ ++  D+     ++   +G+   ++          + +  V+R   L EH  +S  
Sbjct: 287 HHVLHVHGADKHAATTEIAARDGRVLMFL----------DTKHAVDR---LTEHLLNSGV 333

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI--DVVDASIIIIENAEHFGLA 574
             A +HG  S   +   +  FK+G   +L+AT V   GI  D +D  + +    +H    
Sbjct: 334 RAAALHGGKSQPQRTRTLTQFKDGHVSVLVATNVAARGIHVDSLDLVVNVDPPTDHKDY- 392

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            LH+  GR  R  E  S + L   P  +   TRL
Sbjct: 393 -LHR-GGRTARAGESGSVVTLVT-PNQRRGMTRL 423


>gi|156119497|ref|NP_001095245.1| putative ATP-dependent RNA helicase an3 [Xenopus laevis]
 gi|113825|sp|P24346|DDX3_XENLA RecName: Full=Putative ATP-dependent RNA helicase an3
 gi|65060|emb|CAA40605.1| ATP dependent RNA helicase [Xenopus laevis]
          Length = 697

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 89/425 (20%), Positives = 171/425 (40%), Gaps = 77/425 (18%)

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGI 253
            K  F       +   + R  +D +W+ P A       EL +G    +     F+K   I
Sbjct: 153 DKSGFGRFDRGNSRWSDDRNDED-DWSKPLAPNDRVEQELFSGSNTGI----NFEKYDDI 207

Query: 254 PINVEGK-------------IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLR 296
           P+   G              + + I+ NI  +    PT  Q+ AI  I++    K  ++ 
Sbjct: 208 PVEATGSNCPPHIESFHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIE----KRDLMA 263

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------------------AVIMAPIGILAQ 335
             Q   GSGKT   L+ + + + A G                      ++++AP   LA 
Sbjct: 264 CAQ--TGSGKTAAFLLPILSQIYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAV 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           Q YE  +K+   +++   ++ G      + + LER      H+++ T     D ++  K+
Sbjct: 322 QIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKI 377

Query: 396 IL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVL---LMTATPIPRTLVLTSLGD 442
            L     +++DE  R     F  Q R  + Q    P  +   +M +   P+ + + +   
Sbjct: 378 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDF 437

Query: 443 ID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           +D      +    +  + I   ++ +  +D+    L ++ + GK +  +   +E KK ++
Sbjct: 438 LDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNATGKDSLTLV-FVETKKGAD 496

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
               +E F   HE +  +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +
Sbjct: 497 ---ALEDF-LYHEGY--ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 550

Query: 560 ASIII 564
              +I
Sbjct: 551 VKHVI 555


>gi|330827848|ref|YP_004390800.1| Primosomal protein [Aeromonas veronii B565]
 gi|328802984|gb|AEB48183.1| Primosomal protein [Aeromonas veronii B565]
          Length = 735

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 35/211 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++AG QA++M P IG+  Q     I ++ +   + V  +
Sbjct: 225 LLDGITGSGKTEVYLSILEPLLKAGKQALVMVPEIGLTPQT----INRFRRRFNVPVVAM 280

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
              M    R  A      G A I+IGT  A+F     ++ L ++I+DE+H    +Q+   
Sbjct: 281 NSAMNDRERLDAWLACRDGGAAILIGTRSAVF---TPFHNLGIIIIDEEHDGSFKQQDGF 337

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                   +    +A  P +LL +ATP   TL     G      +T +    +  + VI+
Sbjct: 338 RYHARDLAVMRAHRAGIP-ILLGSATPSLETLHNARTGKYHHLTLTRRAGNAQTARQVIL 396

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            I  +     RL+  LS         PQ+E+
Sbjct: 397 DIKNV-----RLQAGLS---------PQLEQ 413


>gi|312279014|gb|ADQ63671.1| Peptide chain release factor 2 [Streptococcus thermophilus ND03]
          Length = 447

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 134/313 (42%), Gaps = 27/313 (8%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +   +       Q VI AP   LA Q Y+  K+  +++   + ++   
Sbjct: 47  TGSGKTHTFLLPIFEKLNPESRDVQVVITAPSRELATQIYQSTKQIAKHSDTEIRVVN-Y 105

Query: 359 MPQAHRRKALERIAHGQAHIIIGT----HALFQD-SIQYYKLILVIVDEQHRFGVQQRLK 413
           +    +++ +E++   Q HI+IGT    + LF+   +  +K    +VDE         L 
Sbjct: 106 VGGTDKQRQIEKLKVAQPHIVIGTPGRIYDLFKSGDLAIHKAHTFVVDEADMTMDMGFLA 165

Query: 414 LTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
              K  A       +L+ +AT IP+ L         + K    P   + IKT  +  + I
Sbjct: 166 TVDKIAASLPKEVQILVFSAT-IPQKLQPF------LKKYLTNPVMEQ-IKTSTVIADTI 217

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRM 525
           D  +   K     G+    I   ++      F +  ER + LH +  S+   +A IHG +
Sbjct: 218 DNWLVSTKGRNKNGQ-ILEILKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGI 276

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +++ +M+  K    + ++AT +   GID+   S +I +         +H++ GR GR
Sbjct: 277 PPRERKRIMNQVKKLEFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGR 335

Query: 586 GEEISSCILLYHP 598
                + I LY P
Sbjct: 336 NGLSGTAITLYQP 348


>gi|224060745|ref|XP_002196090.1| PREDICTED: eukaryotic translation initiation factor 4A2
           [Taeniopygia guttata]
          Length = 407

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 130/291 (44%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 74  IAQAQSGTGKTATFAISILQQLEIDLKESQALVLAPTRELAQQIQKVILALGDYMGATCH 133

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 134 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 190

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK +T   V+L++AT +P          +D+ ++T+K   R PI+   I
Sbjct: 191 RGFKDQIYEIFQKLSTNIQVVLLSAT-MP----------MDVLEVTKKFM-RDPIR---I 235

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 236 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHA 295

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 296 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 346


>gi|148910547|gb|ABR18348.1| unknown [Picea sitchensis]
 gi|224284155|gb|ACN39814.1| unknown [Picea sitchensis]
 gi|224286107|gb|ACN40764.1| unknown [Picea sitchensis]
          Length = 413

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 126/314 (40%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++      Q+ V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYGLLDCQALVLAPTRELAQQIEKVMRALGDYLQVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT          H+L  D I+ +  +L   DE 
Sbjct: 141 ACVGGTSV----RDDQRILMSGVHVVVGTPGRVFDMLRRHSLRPDYIKMF--VLDEADEM 194

Query: 404 HRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++        +   V + +AT  P  L +T        K   KP        V
Sbjct: 195 LSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR-------KFMSKP--------V 239

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 240 RILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKM 299

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 300 RARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 359

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 360 PENYLHRI-GRSGR 372


>gi|149278777|ref|ZP_01884912.1| ATP-independent RNA helicase [Pedobacter sp. BAL39]
 gi|149230396|gb|EDM35780.1| ATP-independent RNA helicase [Pedobacter sp. BAL39]
          Length = 435

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 126/306 (41%), Gaps = 36/306 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +L    GSGKTL  L+ +   ++A   G QA+++ P   LA Q  +  ++    T   V 
Sbjct: 33  VLLAPTGSGKTLGFLLPVLKNLDAARKGVQALVLVPSRELALQIEQVFRQM--GTGFKVN 90

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT---------HALFQDSIQYYKLILVIVDEQH 404
              G  P    R   E+       ++IGT         H  F +S     L+L   D+  
Sbjct: 91  CCYGGHPVRTERNNFEQ----PPAVLIGTPGRIAYHLRHENFDEST-ITTLVLDEFDKAL 145

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATP---IPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            FG Q+ +   + +  +    +L +AT    IP    +++   ID  K  +     K  K
Sbjct: 146 EFGFQEDMSYIIRRLLSLKQRMLTSATAMELIPDFTGVSNPIQIDFLKDQKAAPDLKLKK 205

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
                 +++D + +   ++   G++A  I          N R  V+R + L         
Sbjct: 206 VTTTAADKLDTLFQ---LICKIGERATLIF--------CNHRETVDRISDLLIDQRLGHD 254

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG M   ++E  +  F+NG+ ++LI T +   G+D+ +   II     +   A LH+ 
Sbjct: 255 IFHGGMEQDERERALLKFRNGSIRILITTDLASRGLDIPEVECIIHYQLPYTEDAFLHR- 313

Query: 580 RGRVGR 585
            GR  R
Sbjct: 314 NGRTAR 319


>gi|115522860|ref|YP_779771.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115516807|gb|ABJ04791.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 694

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 146/341 (42%), Gaps = 46/341 (13%)

Query: 297 ILQGDVGSGKTLVALIAMA----AAVE-----AGGQAVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A      VE     A   A+I+AP   LA Q H E    Y  
Sbjct: 40  LVSAQTGSGKTVAYGLAIARDLLGDVEQFAPAAAPLALIVAPTRELALQVHRELGWLYRN 99

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILV 398
               +V  + G  P+  +R+    +A G AHI++GT     D ++  +L        +L 
Sbjct: 100 AGARVVSCVGGMDPRREQRE----LAEG-AHIVVGTPGRLCDHLRRGRLDVSQLKAVVLD 154

Query: 399 IVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPR---TLVLTSLGDIDISKITEKPA 453
             DE    G ++ ++   K T      LL +AT +PR   TL  T   +    ++     
Sbjct: 155 EADEMLDLGFREDMEFILKTTPETRRTLLFSAT-LPRAIVTLAKTYQHNAFRVEVAGGEH 213

Query: 454 GRKPIKTVIIPINRID---EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           G   I+   I I   D    V+  L+ +  E   A   C         N R+ V    + 
Sbjct: 214 GHVDIEYRAIRIAPSDVEHAVVNVLRFI--ESPSAIVFC---------NTRNAVNHLQTS 262

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 S+  + G ++  ++ + ++S ++G  ++ +AT V   GID+ +  +++  +A+ 
Sbjct: 263 LLERGFSVVALSGELTQNERTTALNSLRDGRARVCVATDVAARGIDLPNLGLVV--HADL 320

Query: 571 FGLAQLHQLR-GRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
               ++ Q R GR GR  +    +LL  P   + + T L++
Sbjct: 321 PNDPEVMQHRSGRTGRAGKKGVSVLLVPPARRRRAETLLNL 361


>gi|89053524|ref|YP_508975.1| primosome assembly protein PriA [Jannaschia sp. CCS1]
 gi|88863073|gb|ABD53950.1| primosomal protein N' [Jannaschia sp. CCS1]
          Length = 732

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 9/139 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
           T+ QE A  D LQ+ S+  R   +L +G  GSGKT V L A+A  +  G QA+++ P   
Sbjct: 199 TEDQEIA-ADRLQEGSRARRYGAVLLKGVTGSGKTEVYLEAVAECLRQGRQALVLLPEIA 257

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
           L     EF+ +               +    RR+    +  G+A +++G   ALF   + 
Sbjct: 258 LTS---EFLTRVKARFGADPAEWHSGVTMTERRRCWRMVGQGEAQLVVGARSALF---LP 311

Query: 392 YYKLILVIVDEQHRFGVQQ 410
           Y  L L++VDE+H    +Q
Sbjct: 312 YRDLGLIVVDEEHDTSYKQ 330


>gi|163855229|ref|YP_001629527.1| putative ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
 gi|163258957|emb|CAP41256.1| putative ATP-dependent RNA helicase [Bordetella petrii]
          Length = 476

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 123/289 (42%), Gaps = 31/289 (10%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           + +I+ P   LA Q YE +K+Y+++T +   ++ G +    +++AL R       I++ T
Sbjct: 95  RTLILTPTRELADQVYESVKRYSKHTPLRSAVVFGGVDIGPQKEALRR----GCEILVAT 150

Query: 383 HALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                    Q ++   ++ ++++DE  R      L    +     V L+ A    + L+ 
Sbjct: 151 PGRLLDHVEQKTVNLSQVGILVLDEADRMLDMGFLPDLDRI----VRLLPAQR--QGLLF 204

Query: 438 TSLGDIDISKITEKPAGR----KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           ++    +I K+     GR    +P++  +   N   + + ++   +    K   +   ++
Sbjct: 205 SATFSNEIRKL-----GRTYLNQPVEIEVAARNATADTVSQIAYQMPSDAKRAAVVHLVK 259

Query: 494 EK--KE----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +  K+    SN +    R     E        IHG  S  D+   +D+FK G  ++L+A
Sbjct: 260 SRGLKQVIVFSNTKIGTARLARELERDGVRAESIHGDKSQADRMKALDAFKAGELEVLVA 319

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           T V   G+DV     +I  +  H     +H++ GR GR       I L+
Sbjct: 320 TDVAARGLDVAGVPCVINYDLPHNAEDYVHRI-GRTGRAGASGEAIALF 367


>gi|34558250|ref|NP_908065.1| excinuclease ABC subunit B [Wolinella succinogenes DSM 1740]
 gi|81832798|sp|Q7M806|UVRB_WOLSU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|34483969|emb|CAE10965.1| EXINUCLEASE ABC SUBUNIT B [Wolinella succinogenes]
          Length = 658

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 79/182 (43%), Gaps = 19/182 (10%)

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG-RKPIKTVIIPINRIDEVIERLKVV 478
           APH L ++ATP PR L    L    I++   +P G   P+  V    N++  + + +K V
Sbjct: 388 APHYLFVSATPAPREL---ELSQAQIAEQIVRPTGLLDPLYEVRDSQNQVAALFDEIKAV 444

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++ G++                + + E     +      +  +H  +  I++  ++   +
Sbjct: 445 VARGERVLITALT---------KKMAEELTKYYADLGIKVRYMHSEIDAIERNQIIRGLR 495

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL----AQLHQLRGRVGRGEEISSCIL 594
            G   +L+   ++  G+D+ + S++ I +A+  G       L Q  GR  R   ++  +L
Sbjct: 496 TGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGRAARN--LNGRVL 553

Query: 595 LY 596
           L+
Sbjct: 554 LF 555


>gi|85706796|ref|ZP_01037887.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. 217]
 gi|85668589|gb|EAQ23459.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. 217]
          Length = 662

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 143/341 (41%), Gaps = 51/341 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A  +  G +         A+I+AP   LA Q   E    Y +
Sbjct: 54  LVSAQTGSGKTVGFGLAIAPTLLDGAERLPPAAAPLALIVAPTRELALQVMRELSWLYAE 113

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILV 398
               +V  + G M     R+ALER     AHI++GT     D I    L        +L 
Sbjct: 114 AGARLVSCV-GGMDARDERRALER----GAHIVVGTPGRLCDHINRGALDMTSLRAIVLD 168

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK---PAGR 455
             DE    G ++ L+          +L  A    RTL+ ++     I+K+ EK    A R
Sbjct: 169 EADEMLDLGFREDLEF---------MLAAAPAERRTLMFSATVPPMIAKLAEKFQRDAHR 219

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSLH 511
             + T+       D   + L VV  + + A     +  + + +    N R++V R  +  
Sbjct: 220 --VTTLTGAKQHADISYQALTVVPHDAEGAVINLLRYHDAQNAIVFANTRAMVARLTARL 277

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IEN 567
            +   ++  + G +S  ++   + + ++G  ++ +AT V   GID+ +  +++      N
Sbjct: 278 ANRGFAVVSLSGELSQAERTHALQAMRDGRARVCVATDVAARGIDLPNLDLVVHAELPTN 337

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           +E  GL       GR GR + IS+ I+      S N   RL
Sbjct: 338 SE--GLLHRSGRTGRAGR-KGISALIVAVK---SANKAERL 372


>gi|329956784|ref|ZP_08297353.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
 gi|328523823|gb|EGF50910.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
          Length = 372

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 133/318 (41%), Gaps = 45/318 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            G+GKT    I +   ++AG +      A+I+ P   LA Q  E I  Y + TQ+   +I
Sbjct: 47  TGTGKTAAFAIPIIQHLQAGKERDKSIKALILTPTRELALQISECIDDYAKYTQVRHGVI 106

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--YYKLILV---IVDEQHRF---G 407
            G + Q    +A   + H    I++ T     D +   Y +L  V   ++DE  R    G
Sbjct: 107 FGGVNQ----RAQVNMLHKGVDILVATPGRLLDLMNQGYIRLDSVRHFVLDEADRMLDMG 162

Query: 408 VQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
               +K  L +       L  +AT +P T++  +   +           ++P+K  I P 
Sbjct: 163 FIHDIKRLLPKLPKEKQTLFFSAT-MPDTIIALTNSLL-----------KQPVKIAITPK 210

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA------ 519
           +   + IE+  V   E K+   +   I  K E     V  R     +     ++      
Sbjct: 211 SSTVDTIEQ-TVYFVEKKEKSKLLISILHKAEGQSVLVFSRTKHNADRIVRVLSKAGIGS 269

Query: 520 -IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG  S   ++S +++FK G  +++IAT +   GID+ +  ++I  +        +H+
Sbjct: 270 QAIHGNKSQNARQSALENFKTGKIRVMIATDIAARGIDINELPLVINYDLPDVPETYVHR 329

Query: 579 LRGRVGR----GEEISSC 592
           + GR GR    G  ++ C
Sbjct: 330 I-GRTGRAGNSGTALTFC 346


>gi|237713878|ref|ZP_04544359.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409213|ref|ZP_06085757.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647413|ref|ZP_06725001.1| ATP-dependent DNA helicase, RecQ family [Bacteroides ovatus SD CC
           2a]
 gi|294809804|ref|ZP_06768486.1| ATP-dependent DNA helicase, RecQ family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229446034|gb|EEO51825.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352960|gb|EEZ02056.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637240|gb|EFF55670.1| ATP-dependent DNA helicase, RecQ family [Bacteroides ovatus SD CC
           2a]
 gi|294442990|gb|EFG11775.1| ATP-dependent DNA helicase, RecQ family [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 1603

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 165/393 (41%), Gaps = 67/393 (17%)

Query: 302 VGSGKTLVALI-AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G GK++   + A+ +  +  G  V+++P+  L +   + ++K    + +    I G + 
Sbjct: 289 TGGGKSITFQVPALMSGEQVKGLTVVISPLQSLMKDQVDNLRKNDITSAVT---INGLLD 345

Query: 361 QAHRRKALERIAHGQAHII-IGTHALFQDSIQYY----KLILVIVDEQHRFG-------- 407
              R K+ E + +G A I+ I   +L   SI+      K++  ++DE H F         
Sbjct: 346 PIERAKSFENVENGFASILYISPESLRSRSIERLLLGRKVVRFVIDEAHCFSSWGQDFRV 405

Query: 408 ----VQQRLKLTQKATAPH----VLLMTATPIPRTL--VLTSLGD-IDIS-KITEKPAGR 455
               +   LK  Q+         V   TAT   + +  + T   D ++I  ++      R
Sbjct: 406 DYLYIGDYLKQLQEKKGLQQPIPVSCFTATAKQKVIEDISTYFKDKLNIRLELFRSDISR 465

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             ++  +   N+ +E    L+ ++ +       CP I     +  R+  +    L +   
Sbjct: 466 TNLQYQVFERNQENEKYNSLRDIIEQKS-----CPTIVYVART--RTATKLAARLKQD-G 517

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF---- 571
            S+A  HG+M   DK    + F  G  ++++AT+   +G+D  D  +++     H+    
Sbjct: 518 FSVAAFHGKMDIKDKTENQNDFIAGNIQIMVATSAFGMGVDKKDVGLVV-----HYEISD 572

Query: 572 GLAQLHQLRGRVGRGEEI-SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
            L    Q  GR GR E I +SC +L+               ++    F++    L Q K 
Sbjct: 573 SLENYVQEAGRAGRDEHINASCYILFDE-------------EDLNKHFIL----LNQTKL 615

Query: 631 --GEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
             GEI  + +S + +    +P++  S+LEIARK
Sbjct: 616 HIGEIQQVWKS-IKEITRLRPKVSQSVLEIARK 647


>gi|227877187|ref|ZP_03995261.1| superfamily II DNA/RNA helicase ComFA [Lactobacillus crispatus
           JV-V01]
 gi|256842741|ref|ZP_05548229.1| competence protein [Lactobacillus crispatus 125-2-CHN]
 gi|293380186|ref|ZP_06626268.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
 gi|227863241|gb|EEJ70686.1| superfamily II DNA/RNA helicase ComFA [Lactobacillus crispatus
           JV-V01]
 gi|256614161|gb|EEU19362.1| competence protein [Lactobacillus crispatus 125-2-CHN]
 gi|290923230|gb|EFE00151.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
          Length = 426

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 147/343 (42%), Gaps = 50/343 (14%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q++    ++Q+  Q+   L  +    G+GKT +    +A  ++ G +A I  P I +
Sbjct: 93  TPLQQNISDKLVQNFEQRKNTL--VHAVTGAGKTEMLFQLIARCMKKGQRACIATPRIDV 150

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK----ALERIAHGQAHIIIGTHALFQD 388
           + +    F   + Q     VEI      + H R+     LE++       I  TH L   
Sbjct: 151 VNELFPRFSAAFAQ-----VEI-----GKYHGREFKEIGLEQLT------ICTTHQL--- 191

Query: 389 SIQYYKLI-LVIVDEQHRFGVQQRLKLTQKA-----TAPHVLLMTATPIPRTLVLTSLGD 442
            +++Y+   L+++DE   F      +L   A     T    + +TATP    L+    G 
Sbjct: 192 -MKFYRAFDLLVIDEVDSFPYVGNPQLHFAAKNAVKTTGTRMYLTATPTNDLLLEAKTGK 250

Query: 443 IDISKITEK-PAGRKPI---KTVIIPINRIDEV----IERLKVVLSEGKKAYWICPQIEE 494
           ++I ++  +   G  P+   +  I P  R  ++    ++ +K V+  G       P+IEE
Sbjct: 251 LEILRLNRRFHGGLLPVPRERLFIRPFLRKGQIHPKLMQEIKKVIQSGHPLLLFVPRIEE 310

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                   +     +L +   + I +      D  +   + +F++    LL+ TT++E G
Sbjct: 311 --------IPLYQEALRKKLQNKIKLAGVHAQDPQRLEKVQAFRDRKYDLLLTTTILERG 362

Query: 555 IDVVDASIIIIENAEH-FGLAQLHQLRGRVGRGEEISSCILLY 596
           +   +  +III   +  +  A L Q+ GRVGR  +  + ++LY
Sbjct: 363 VTFKNVWVIIIAADDAIYTAASLVQIAGRVGRAHDDQTGLVLY 405


>gi|145257496|ref|XP_001401758.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Aspergillus
           niger CBS 513.88]
 gi|143359821|sp|A2QIL2|PRP28_ASPNC RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|134058672|emb|CAK38656.1| unnamed protein product [Aspergillus niger]
          Length = 810

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 149/366 (40%), Gaps = 70/366 (19%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------------ 320
           PT  Q +AI   +Q     NR L I     GSGKT   L+ +   +              
Sbjct: 395 PTPIQRAAIPIAMQ-----NRDL-IGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKA 448

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHG---Q 375
            G  A+++AP   LAQQ     KK+T      +V I+ G+        +LE  A+     
Sbjct: 449 DGPYAIVLAPTRELAQQIEIEAKKFTGPLGFNVVSIVGGH--------SLEEQAYSLRDG 500

Query: 376 AHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLTQKA--------- 418
           A III T     D I+   L+L     VI+DE  R    G ++ +     A         
Sbjct: 501 AEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPD 560

Query: 419 --TAPHVLLMT------ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
              A + L M+           +T++ T+     + +I  K   R  I T+      +D 
Sbjct: 561 SEDAENPLAMSRHINHDQHRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDT 620

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----------SIAI 520
           V +R++++  E K+   +   +       FR+ +  F ++  +  +          S   
Sbjct: 621 VEQRVEMIAGEDKRKKRLGDIL---SSGEFRAPIIVFVNIKRNCDAIAREIKQWGFSSVT 677

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG  +   +E+ + S +NGT  +L+AT +   GIDV D S+++  N      +  H++ 
Sbjct: 678 LHGSKTQDQREAALASVRNGTTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRI- 736

Query: 581 GRVGRG 586
           GR GR 
Sbjct: 737 GRTGRA 742


>gi|161521775|ref|YP_001585202.1| ATP-dependent RNA helicase DbpA [Burkholderia multivorans ATCC
           17616]
 gi|189352063|ref|YP_001947690.1| ATP-dependent RNA helicase DbpA [Burkholderia multivorans ATCC
           17616]
 gi|221210620|ref|ZP_03583600.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD1]
 gi|160345825|gb|ABX18910.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
 gi|189336085|dbj|BAG45154.1| ATP-independent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|221169576|gb|EEE02043.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD1]
          Length = 464

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 139/315 (44%), Gaps = 30/315 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ + ++A     QA+I+ P   LA Q  + +++  +  + + V
Sbjct: 48  IAQAKTGSGKTAAFSLALLSRLDARRFDVQAMILCPTRELADQVAQEVRRLARAEENVKV 107

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFG 407
             + G  P   + ++LE   HG AHI++GT     D     ++Q   L  +++DE  R  
Sbjct: 108 LTLCGGTPMRPQAQSLE---HG-AHIVVGTPGRIMDHLDRGNLQLDALNTLVLDEADRML 163

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K      +     P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 164 DMGFFDDIAK------VARQCPPTRQTLLFSATYPDGIAKLSQQFL-RSP-KEVKLEERH 215

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 216 DDSKIRQRFYEVTETERLHAVGMLLNHYRPVSTIAFCNTKQQCRDLIDVLHAQGFHALAL 275

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 276 -HGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI- 333

Query: 581 GRVGRGEEISSCILL 595
           GR GR ++    + L
Sbjct: 334 GRTGRADQAGWALSL 348


>gi|307823524|ref|ZP_07653753.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307735509|gb|EFO06357.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 419

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 130/298 (43%), Gaps = 44/298 (14%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN--TQIIVEIITGNM---PQAHRRKALERIAHGQAH 377
           + +I+ P   LA Q  E + KY  +   ++  E++ G +   PQ  R +       G   
Sbjct: 75  RVLILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMMRLR-------GGVD 127

Query: 378 IIIGTHALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I++ T         Q++++  ++  +I+DE  R      ++  +K       ++   P  
Sbjct: 128 ILVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRK-------IIAFLPKK 180

Query: 433 R-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           R  L+ ++    DI K+T       PIK  + P N   E++E++  ++++  K   +C  
Sbjct: 181 RQNLLFSATFSEDIRKLTTGLL-VNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHL 239

Query: 492 IEEKKESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           I+E        F +     N L E         A IHG  S   + S +  FK G  ++L
Sbjct: 240 IKEHDWQQVLVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEIRVL 299

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVGR-GEEISSCILLYH 597
           +AT V   GID     I ++ +  +F L +     +H++ GR GR GEE  +  L+ H
Sbjct: 300 VATDVAARGID-----INLLPHVVNFELPRAPEDYVHRI-GRTGRAGEEGQAISLVSH 351


>gi|271500546|ref|YP_003333571.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270344101|gb|ACZ76866.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 457

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 145/339 (42%), Gaps = 48/339 (14%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEI 354
           Q   GSGKT    + +   ++AG    Q++++ P   LA Q    +++  +    I V +
Sbjct: 46  QAKTGSGKTAAFGLGLLQHLDAGQFKTQSLVLCPTRELADQVANELRRLARGMPNIKVLV 105

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF--- 406
           + G +P + +R +L    H   HII+ T       L ++++    L  +++DE  R    
Sbjct: 106 LCGGVPFSIQRDSL---IHA-PHIIVATPGRLLDHLKKETVSLDALQTLVLDEADRMLDM 161

Query: 407 ------------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
                          +R  L   AT P  +   +  I R  ++     I+I  + E PA 
Sbjct: 162 GFADAIDEVIHHAPAERQTLLFSATWPEAIAAISRRIQRDPLV-----IEIDTVDELPA- 215

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
              ++     ++R +  ++ L+ +LS  + A  +   +    + + ++V +       H 
Sbjct: 216 ---VEQQFYEVSR-NGKLDLLQKLLSREQPASCV---VFCNTKKDCQAVYDALT----HS 264

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             S+  +HG M   D++  +  F NG+ ++L+AT V   G+D+    ++I  N E     
Sbjct: 265 NQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKALEMVI--NYELSWDP 322

Query: 575 QLHQLR-GRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           ++H  R GR  R  E    I L  P  ++ +     +LK
Sbjct: 323 EVHVHRIGRTARAGEQGLAISLCAPEEAQRANALEEMLK 361


>gi|157374733|ref|YP_001473333.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157317107|gb|ABV36205.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 465

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 142/355 (40%), Gaps = 55/355 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL-------IAMAAAVEAGGQAV 325
           PT+ Q+ AI      +S K+ M        GSGKTL  L       I+  A  +   + +
Sbjct: 43  PTEIQQQAIP---VGLSGKDLMA---SSKTGSGKTLAFLLPAMQRIISTRALSKRDPRVL 96

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q Y  ++    NTQ     I G      + K+LER      H ++ T   
Sbjct: 97  ILLPTRELANQVYSQLRLLVANTQYKAVKILGGENFNDQAKSLER----DPHFVVATPGR 152

Query: 386 FQDSIQYYKL-----ILVIVDEQHR---FGVQQRLKLTQKATAPH----VLLMTATPIPR 433
             D +  + L      L+I+DE  R    G   +LK    A A H     L+ +AT    
Sbjct: 153 LADHLAQHHLHLNGLELLILDEADRMLDLGFVDQLKAIN-AAADHKRRQTLMFSAT---- 207

Query: 434 TLVLTSLGDIDISKITEKPAG--RKPIKTVIIPINRIDEVIERLKVVLSEG---KKAYWI 488
                    +D +KI E  A   + P+  V I    I+ +    ++ LS+    K+A   
Sbjct: 208 ---------LDHNKINEIAAELLKDPMH-VSIGAGNIENLDITQRIYLSDHLDHKEALLN 257

Query: 489 CPQIEEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
                EK +     +  R   +R  +       + A + G +    +  +MD F  G   
Sbjct: 258 HILKNEKNKQVIIFTATRQDTDRLATKLAEAGFNTASLSGDLKQNARNQIMDQFSRGLQD 317

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +L+ T V   G+D+++ S++I  +   F    +H++ GR GR       I L  P
Sbjct: 318 ILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDAISLVGP 371


>gi|262375109|ref|ZP_06068343.1| primosomal protein N [Acinetobacter lwoffii SH145]
 gi|262310122|gb|EEY91251.1| primosomal protein N [Acinetobacter lwoffii SH145]
          Length = 740

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +    Q+ A++ +L+  +Q    L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 201 LAQMPLTANPEQKHAVEQVLKYRNQYQAFL--LDGLTGSGKTEVYLQIMEQVLKQGKQVL 258

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q     I ++       + ++   +  + R +A +    G+A I++GT +
Sbjct: 259 VLVPEIGLTPQT----ISRFQSRFHCHIALLHSGLNDSKRLQAWQSAETGKASIVLGTRS 314

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                +    L L+I+DE+H    +Q+
Sbjct: 315 AIYTPMP--NLGLIILDEEHDLSFKQQ 339


>gi|225626665|ref|ZP_03784704.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella ceti str. Cudo]
 gi|254709276|ref|ZP_05171087.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella pinnipedialis
           B2/94]
 gi|256030799|ref|ZP_05444413.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella pinnipedialis
           M292/94/1]
 gi|256158820|ref|ZP_05456681.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella ceti M490/95/1]
 gi|256254205|ref|ZP_05459741.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella ceti B1/94]
 gi|260169703|ref|ZP_05756514.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella sp. F5/99]
 gi|261221354|ref|ZP_05935635.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261316783|ref|ZP_05955980.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261759240|ref|ZP_06002949.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|265987854|ref|ZP_06100411.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|265997314|ref|ZP_06109871.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
 gi|225618322|gb|EEH15365.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella ceti str. Cudo]
 gi|260919938|gb|EEX86591.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261296006|gb|EEX99502.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261739224|gb|EEY27220.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|262551782|gb|EEZ07772.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
 gi|264660051|gb|EEZ30312.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
          Length = 575

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 121/294 (41%), Gaps = 33/294 (11%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q    ++    +T   +    G M     R+ALER     +HI++GT 
Sbjct: 26  AMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GSHIVVGTP 81

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIP 432
              +D I        Q   ++L   DE    G ++ L+  L +       L+ +AT P P
Sbjct: 82  GRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKP 141

Query: 433 RTLVLTSLGD----IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
              +     +    I +   T + A    +   + P  R   +I  L  +  + + +   
Sbjct: 142 IAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIF 199

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C         + R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +AT
Sbjct: 200 C---------STREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 250

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            V   GID+ +  ++I  +        LH+  GR GR     +C+L+   P S+
Sbjct: 251 DVAARGIDLPNLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGTCVLVV--PFSR 301


>gi|184156700|ref|YP_001845039.1| primosomal protein N' [Acinetobacter baumannii ACICU]
 gi|183208294|gb|ACC55692.1| Primosomal protein N' (replication factor Y) - superfamily II
           helicase [Acinetobacter baumannii ACICU]
          Length = 742

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +  + Q+ A + +L    Q    L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 202 LAQMPLTLNEDQKKATQHVLNAQHQYQAFL--LDGLTGSGKTEVYLHIMHEVLKQGKQVL 259

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F  ++  +    + ++   +  + R +A ++   G+A II+GT +
Sbjct: 260 VLVPEIGLTPQTISRFKSRFNCD----IALLHSGLNDSKRLQAWQQAQTGKASIILGTRS 315

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                +   +L L+I+DE+H    +Q+
Sbjct: 316 AIYTPLP--RLGLIILDEEHDLSYKQQ 340


>gi|171778129|ref|ZP_02919386.1| hypothetical protein STRINF_00221 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283111|gb|EDT48535.1| hypothetical protein STRINF_00221 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 447

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 135/323 (41%), Gaps = 41/323 (12%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           +   GSGKT   L+ +   ++      Q VI AP   L  Q Y+  K+    ++   EI 
Sbjct: 44  ESKTGSGKTHTFLLPIFEKLDETSDNVQVVITAPSRELVTQIYQATKQIADKSE--TEIR 101

Query: 356 TGN-MPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQ 409
             N +    + + +E++   Q HI+IGT     D      ++ YK    +VDE       
Sbjct: 102 VANYVGGTDKLRQIEKLKSSQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDM 161

Query: 410 QRLKLTQK--ATAP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
             L    K  +T P    +L+ +AT IP+ L         + K    P   K IKT  + 
Sbjct: 162 GFLDTVDKIASTLPKDVQILVFSAT-IPQKLQPF------LKKYLTNPVMEK-IKTTTVI 213

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSS- 517
            + ID  +     V ++G+        +E  K  N      F +  ER + LH +  S+ 
Sbjct: 214 ADTIDNWL-----VSTKGRDKN--AQILEITKALNPYLAMIFVNTKERADELHSYLVSNG 266

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +A IHG +   +++  M+  K  + + ++AT +   GID+   S +I +         
Sbjct: 267 LKVAKIHGGIPPRERKRTMNQTKKLSYEYIVATDLAARGIDIEGVSHVINDAIPQDLSFF 326

Query: 576 LHQLRGRVGRGEEISSCILLYHP 598
           +H++ GR GR       I LY P
Sbjct: 327 VHRV-GRTGRNGLNGIAITLYQP 348


>gi|160380616|sp|A6ZUA1|DBP3_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP3; AltName: Full=DEAD
           box protein 3; AltName: Full=Helicase CA3
 gi|151943729|gb|EDN62039.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
          Length = 523

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 142/321 (44%), Gaps = 37/321 (11%)

Query: 300 GDVGSGKTL---VALIA--MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            + GSGKT    V  I+  M    + G Q ++++P   LA Q Y+ +   T    +    
Sbjct: 156 AETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCC 215

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF--- 406
           + G +P+  +R  L++     + +++ T     D     S+   ++  +++DE  R    
Sbjct: 216 VYGGVPKDEQRIQLKK-----SQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEK 270

Query: 407 GVQQRLK---LTQKATAPHVLLMTATPIP---RTLVLTSLGD---IDISKITEKPAGRK- 456
           G ++ +K       A+    L+ TAT  P   R L  T + +   + I    +  A ++ 
Sbjct: 271 GFEEDIKNIIRETDASKRQTLMFTAT-WPKEVRELASTFMNNPIKVSIGNTDQLTANKRI 329

Query: 457 -PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             I  V+ P  +  +++E LK   S  KK   +      KKE+   + VER N  +  + 
Sbjct: 330 TQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEA---ARVER-NLKYNGY- 384

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            +IA IHG +S   +   ++ FK+G   LL+AT V   G+D+ +   +I           
Sbjct: 385 -NIAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDY 443

Query: 576 LHQLRGRVGRGEEISSCILLY 596
           +H++ GR GR  +  +   L+
Sbjct: 444 VHRI-GRTGRAGQTGTAHTLF 463


>gi|147668962|ref|YP_001213780.1| primosomal protein N' [Dehalococcoides sp. BAV1]
 gi|146269910|gb|ABQ16902.1| replication restart DNA helicase PriA [Dehalococcoides sp. BAV1]
          Length = 815

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 111/255 (43%), Gaps = 35/255 (13%)

Query: 274 TKSQESAIKDILQDMS-----QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +  QE  ++ I + ++      +N    +L G  GSGKT + L A+A A+  G +A+++ 
Sbjct: 278 SPPQEKCLESINRSLNTPPEDDQNPRTFLLHGITGSGKTEIYLQALAEALRLGKKAIVLV 337

Query: 329 P-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALF 386
           P I +  Q    F  ++       V ++   +    +    +RI +GQA I+IG   ALF
Sbjct: 338 PEISLTPQTIARFAGRFPGR----VAVLHSRLSPGEQFDEWQRIKNGQADIVIGPRSALF 393

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID-- 444
                  K  ++I+DE+H +  +Q+    +  T    L MT       ++ ++  DID  
Sbjct: 394 AP---LDKPGIIIIDEEHEWTYKQQNSQPRYHTRTVALKMTEEYGAVLVLGSATPDIDSY 450

Query: 445 ------ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                 + ++ E P    P +   +P   + +    ++  LSEG ++ +           
Sbjct: 451 FKAQNGLYQLLELPERLTPYRGASLPKTELVD----MRTELSEGNRSIF---------SR 497

Query: 499 NFRSVVERFNSLHEH 513
           N  + +E+  + HE 
Sbjct: 498 NLHASIEKVLAKHEQ 512


>gi|254253734|ref|ZP_04947051.1| Superfamily II DNA helicase [Burkholderia dolosa AUO158]
 gi|124898379|gb|EAY70222.1| Superfamily II DNA helicase [Burkholderia dolosa AUO158]
          Length = 654

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF----G 572
           S+A  HGR++  ++    D F NG  +L++AT    +GID  D   +I     H+     
Sbjct: 325 SVARYHGRLTANERREQQDRFMNGDARLIVATNAFGMGIDKPDVRFVI-----HYQIPGS 379

Query: 573 LAQLHQLRGRVGRGEEISSCILLY 596
           L   +Q  GR GR  + + C+LL+
Sbjct: 380 LDAYYQETGRAGRDGDNADCVLLF 403


>gi|325916975|ref|ZP_08179217.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536826|gb|EGD08580.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 458

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 122/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + ++K      N ++
Sbjct: 43  IAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQVGKQLRKLATGIPNMKL 102

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +V  +TG MP   +  +LE  AH    +++GT    Q+  +   L L     +++DE  R
Sbjct: 103 VV--LTGGMPLGPQLASLE--AH-DPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADR 157

Query: 406 F---GVQQRLKLTQKATAPH--VLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPI 458
               G ++ ++        H   LL +AT   I RTL    L D              P+
Sbjct: 158 MLDMGFEEPIREIASRCDKHRQSLLFSATFPDIIRTLAREILKD--------------PV 203

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEH 513
           +  +   +   E+ ++   V    ++       +    ES     N R  V+      + 
Sbjct: 204 EITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLLRFNPESSVVFCNTRKEVDEVAGSLQE 263

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           F  S   +HG M   D++ V+  F N +C +L+A+ V   G+DV D S ++
Sbjct: 264 FGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVV 314


>gi|195338535|ref|XP_002035880.1| GM15916 [Drosophila sechellia]
 gi|194129760|gb|EDW51803.1| GM15916 [Drosophila sechellia]
          Length = 681

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 132/319 (41%), Gaps = 36/319 (11%)

Query: 302 VGSGKTLVALIAMAAAV-------EAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   L+ + + +       E G  QAVI++P   LA Q ++  +K+   T + + 
Sbjct: 311 TGSGKTASFLLPIISKLLDDPQDLEFGRPQAVIVSPTRELAIQIFDEARKFAYETYLKIG 370

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR--- 405
           I+ G     H+   + +     +H++I T     D +      +     V++DE  R   
Sbjct: 371 IVYGGTSFRHQNDCITK----GSHVLIATLGRLLDFVDRAFVTFEDTRFVVLDEADRMLD 426

Query: 406 --FGVQQRLKLTQKATAP-HVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIK 459
             F    R  +T     P H  LM +   P   + L    L +     I         +K
Sbjct: 427 MGFSEGMRKLMTHVTMRPQHQTLMFSATFPEDIQRLAGEFLNNYVFVAIGMVGGACSDVK 486

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
             I  +++ ++  + ++++  E          +E K+ ++F   +  + S  E  T+SI 
Sbjct: 487 QTIYEVSKFNKRAKLMEILREEADGTIVF---VETKRGADF---LASYLSETEFPTTSI- 539

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG      +E  +  FKNG+ K+LIAT+V   G+D+ +   +I  +        +H++
Sbjct: 540 --HGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPKNIDDYVHRI 597

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR          + P
Sbjct: 598 -GRTGRVGNNGRATTFFDP 615


>gi|152993729|ref|YP_001359450.1| excinuclease ABC subunit B [Sulfurovum sp. NBC37-1]
 gi|151425590|dbj|BAF73093.1| excinuclease ABC, B subunit [Sulfurovum sp. NBC37-1]
          Length = 657

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 100/227 (44%), Gaps = 34/227 (14%)

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG-RKPIKTVIIPINRIDEVIERLKVV 478
           APH L ++ATP P  + L+S+    +++   +P G   P   VI    +++ + +R+K +
Sbjct: 388 APHYLFVSATPAPLEIELSSV----VAEQVVRPTGLLDPEIEVIDSTYQVENLHDRMKPI 443

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +  G++   I   +  KK      + E   S +         +H  +  I++  V+ S +
Sbjct: 444 IERGER---ILVTVLTKK------MAEELTSYYNDLGLKARYMHSDLDAIERNQVIRSLR 494

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL----AQLHQLRGRVGRGEEISSCIL 594
            G   +L+   ++  G+D+ + S++ I +A+  G       L Q  GR  R    +  +L
Sbjct: 495 LGEFDILVGINLLREGLDLPEVSLVAILDADKEGFLRSKTSLIQTAGRAARN--ANGKVL 552

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           +Y   ++              D      E  +QR+E +I+  K+ G+
Sbjct: 553 MYAKKMT--------------DSMKATIETTQQRREKQIVYNKKHGI 585


>gi|73668740|ref|YP_304755.1| Hef nuclease [Methanosarcina barkeri str. Fusaro]
 gi|72395902|gb|AAZ70175.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina barkeri
           str. Fusaro]
          Length = 938

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 22/164 (13%)

Query: 284 ILQDMSQKNRMLRILQGD------VGSGKTLVALIAMAAAVEA-GGQAVIMAPIGILAQQ 336
           + Q + Q N   + L+G        G GKT++AL  + + ++  GG+A++++P   L +Q
Sbjct: 23  VEQRLYQLNLAGKALEGSSLVVLPTGLGKTIIALFVIVSRLQRFGGKALVLSPTKPLVEQ 82

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H  F KK     +  +   TG++  A R K        Q  +I+ T  + ++ +   ++ 
Sbjct: 83  HAAFFKKVMALPEDKILTFTGSIAPAEREKLW-----AQGELIVSTPQVIENDLLTKRIS 137

Query: 397 L-----VIVDEQHR-FGVQQRLKLTQK----ATAPHVLLMTATP 430
           L     +  DE HR  G      + +K    A  PHVL +TA+P
Sbjct: 138 LEDVTHITFDEAHRAVGNYAYTFIAEKYFESAKNPHVLGITASP 181


>gi|77461141|ref|YP_350648.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77385144|gb|ABA76657.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 446

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 150/346 (43%), Gaps = 49/346 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAM-AAAVEAGG-Q 323
           +PT  Q  AI  +L       R L +     G+GKT      L+ L+AM    V A   +
Sbjct: 23  TPTPVQAQAIPVVL-----AGRDL-MAAAQTGTGKTAGFALPLLQLLAMEGPKVTANSVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHIII 380
           A+I+ P   LA+Q +E +++Y +N  +    + G +   PQ  + +       G   +++
Sbjct: 77  ALILVPTRELAEQVHEAVRQYAENLPLRTYAVYGGVSINPQMMKLR-------GGVDLLV 129

Query: 381 GTHA----LF-QDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP--HVLLMTAT- 429
            T      LF Q+++++ +L  +++DE  R    G  + L    +A       LL +AT 
Sbjct: 130 ATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYRALPKKRQTLLFSATF 189

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R L    L D    +++ +      +K  ++ +++      + ++ +   +K  W 
Sbjct: 190 SDDIRLLAGQMLNDPQSIEVSPRNVAANTVKQWVVTVDKK----RKPELFVHLMRKNKWK 245

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +  K  +   ++VE+   L  +       IHG      ++  +D FK    ++L+AT
Sbjct: 246 QVLVFAKTRNGVDALVEKLQGLGVNADG----IHGDKPQATRQRALDRFKLSEVQILVAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
            V   G+D+ D  +++  +        +H++ GR GR    GE IS
Sbjct: 302 DVAARGLDIEDLPLVVNFDLPIVAEDYIHRI-GRTGRAGSTGEAIS 346


>gi|260950467|ref|XP_002619530.1| hypothetical protein CLUG_00689 [Clavispora lusitaniae ATCC 42720]
 gi|238847102|gb|EEQ36566.1| hypothetical protein CLUG_00689 [Clavispora lusitaniae ATCC 42720]
          Length = 470

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 156/358 (43%), Gaps = 51/358 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+K QE A+  +L +         I Q   G+GKT    + + + V+      QAV +AP
Sbjct: 103 PSKIQEKALPLLLSNPPTN----MIGQSQSGTGKTAAFSLTLLSRVDESDNSVQAVCLAP 158

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E I+   + T++  +++   +P ++   +         HI++GT     D 
Sbjct: 159 ARELARQTLEVIQTMGRFTKVTSKLV---VPGSYSADST-----FNEHILVGTPGTLLDL 210

Query: 390 IQ-----YYKLILVIVDEQHRF----GVQQRLKLTQKATAP--HVLLMTAT-PIP-RTLV 436
           I+       K+ + ++DE        G+  +    +KA  P   ++L +AT P   R   
Sbjct: 211 IKRRRVNLSKVRVFVLDEADNMLDAQGLGDQCVRVKKALPPTAQLVLFSATFPTEVRAYA 270

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRID---EVIERLKVVLSEGKKAYWICPQIE 493
              + + +  ++ ++      IK + +  N      EV+  L  +L+ G    ++  +  
Sbjct: 271 ERFVPNANSLELKQEELNVDGIKQLYMDCNSEQHKFEVLCELYGLLTIGSSIIFVGTK-- 328

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R+    +  + +    +++++HG + + +++ ++D F+ G  K+LI T V+  
Sbjct: 329 -------RTADMLYQKMKQE-GHTVSVLHGSLDNAERDRLIDDFREGRSKVLITTNVLAR 380

Query: 554 GIDVVDASII------IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           GID+   S++      + ++ +      LH++ GR GR   +   I   H    K SY
Sbjct: 381 GIDIASVSMVVNYDLPVDKDGKPDPSTYLHRI-GRTGRFGRVGVSISFVH---DKRSY 434


>gi|16126090|ref|NP_420654.1| DEAD-box ATP dependent DNA helicase [Caulobacter crescentus CB15]
 gi|221234860|ref|YP_002517296.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
 gi|13423288|gb|AAK23822.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
           crescentus CB15]
 gi|220964032|gb|ACL95388.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
          Length = 517

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 137/334 (41%), Gaps = 30/334 (8%)

Query: 302 VGSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            G+GKT    + +   +++G       +A+++AP   LA Q     +KY + T++   ++
Sbjct: 48  TGTGKTAAFTLPLIDRLQSGRAKARMPRALVIAPTRELADQVAASFEKYAKGTKLSWALL 107

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---G 407
            G +    + K L+R       ++I T     D  +  KL++     ++VDE  R    G
Sbjct: 108 IGGVSFGDQEKKLDR----GVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMG 163

Query: 408 VQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKI-TEKPAGRKP-IKTVII 463
               ++   K T P    L  +AT  P    LT     D  +I   +PA     I  +++
Sbjct: 164 FIPDIERIFKMTPPKKQTLFFSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLV 223

Query: 464 PINRIDEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
            +   D   +RL +  L E             K E +   +V +   +H +     A IH
Sbjct: 224 KVPSSDPKAKRLALRALIEKAGIETGIVFCNRKTEVD---IVAKSLKVHGY---DAAPIH 277

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G +    +   +  F++G  K+L+A+ V   G+D+   S +   +  H     +H++ GR
Sbjct: 278 GDLDQTQRMKTLADFRSGALKILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRI-GR 336

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
            GR        +L  P   K     + ++ +T D
Sbjct: 337 TGRAGRTGITYMLVTPADDKGFDKVIKLIGSTPD 370


>gi|295706333|ref|YP_003599408.1| primosomal protein N' [Bacillus megaterium DSM 319]
 gi|294803992|gb|ADF41058.1| primosomal protein N' [Bacillus megaterium DSM 319]
          Length = 804

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 7/142 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q  AI  ILQD+ +    + ++ G  GSGKT V L ++   ++ G +A+++ P
Sbjct: 264 PFQLTDEQAEAIAPILQDIEENLHDVFLMYGVTGSGKTEVYLQSIDQVLKKGKEAIMLVP 323

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQD 388
              L  Q    +K++ +     V ++   +    +     +I   +  +++G   A+F  
Sbjct: 324 EISLTPQ---MVKRFKERFGSKVAVLHSGLSTGEKYDEWRKIQRKEVSVVVGARSAVFAP 380

Query: 389 SIQYYKLILVIVDEQHRFGVQQ 410
              +  L L+I+DE+H    +Q
Sbjct: 381 ---FENLGLLIIDEEHETSYKQ 399


>gi|17987217|ref|NP_539851.1| ATP-dependent RNA helicase RHLE [Brucella melitensis bv. 1 str.
           16M]
 gi|225852555|ref|YP_002732788.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis ATCC 23457]
 gi|256044711|ref|ZP_05447615.1| DEAD/DEAH box helicase domain protein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|17982889|gb|AAL52115.1| ATP-dependent RNA helicase rhle [Brucella melitensis bv. 1 str.
           16M]
 gi|225640920|gb|ACO00834.1| DEAD/DEAH box helicase domain protein [Brucella melitensis ATCC
           23457]
          Length = 535

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 162 RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 217

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 218 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 269

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 270 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------ATASEITQVVHPVPTKEK 317

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 318 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 377

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 378 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|262280790|ref|ZP_06058573.1| primosomal protein N' (replication factor Y)- superfamily II
           helicase [Acinetobacter calcoaceticus RUH2202]
 gi|262257690|gb|EEY76425.1| primosomal protein N' (replication factor Y)- superfamily II
           helicase [Acinetobacter calcoaceticus RUH2202]
          Length = 742

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +  + Q+ A + +++   Q    L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 202 LAQMPLTLNEDQKQATQQVIKAQHQYQAFL--LDGLTGSGKTEVYLHIMHEVLKQGKQVL 259

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F  ++  +    + ++   +  + R +A ++   G+A II+GT +
Sbjct: 260 VLVPEIGLTPQTISRFKSRFNCD----IALLHSGLNDSKRLQAWQQAQTGKASIILGTRS 315

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                +   +L L+I+DE+H    +Q+
Sbjct: 316 AIYTPLP--RLGLIILDEEHDLSYKQQ 340


>gi|163843319|ref|YP_001627723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis
           ATCC 23445]
 gi|163674042|gb|ABY38153.1| DEAD/DEAH box helicase domain protein [Brucella suis ATCC 23445]
          Length = 535

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 162 RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 217

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 218 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 269

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 270 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 317

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 318 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 377

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 378 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|134034065|sp|A2QC74|DBP2_ASPNC RecName: Full=ATP-dependent RNA helicase dbp2
 gi|134056301|emb|CAK37534.1| unnamed protein product [Aspergillus niger]
          Length = 565

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 144/343 (41%), Gaps = 51/343 (14%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +     + A        G   +I+AP   LA Q    I K+ ++++I 
Sbjct: 181 AETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIR 240

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR- 405
              + G +P+  + + L R       + I T     D ++       ++  +++DE  R 
Sbjct: 241 NTCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRM 296

Query: 406 ----FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KI 448
               F  Q R  ++Q           AT P  +   A+      +  ++G +D+S   +I
Sbjct: 297 LDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRI 356

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           T+       I  V+    + D++I+ L+ ++        I    +   +      + RF 
Sbjct: 357 TQ-------IVEVVSDFEKRDKMIKHLEKIMENRANKCLIFTGTKRIADE-----ITRF- 403

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D + ++  + 
Sbjct: 404 -LRQDGWPALSI-HGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDY 461

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            +     +H++ GR GR     + I  +    SK +   +++L
Sbjct: 462 PNNSEDYVHRI-GRTGRAGAKGTAITFFTTDNSKQARDLVTIL 503


>gi|158320459|ref|YP_001512966.1| primosomal protein N' [Alkaliphilus oremlandii OhILAs]
 gi|158140658|gb|ABW18970.1| primosomal protein N' [Alkaliphilus oremlandii OhILAs]
          Length = 824

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 9/136 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP- 329
           F P + Q+ AI  I   +  ++    ++ G  GSGKT + L  +   ++ G QA+++ P 
Sbjct: 277 FEPNEEQKKAIDQISASIKNESSETYLIHGVTGSGKTEIYLQLIEKVLKKGKQAIVLVPE 336

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQD 388
           I +  Q    F+ ++ +     + ++  N+    R     RI   +  I+IG   A+F  
Sbjct: 337 ISLTPQTVSRFMGRFGER----IAVLHSNLSDGERYDEWRRILRQEVDIVIGARSAIFA- 391

Query: 389 SIQYYKLILVIVDEQH 404
              +  L ++++DE+H
Sbjct: 392 --PFKNLGMIVIDEEH 405


>gi|317026711|ref|XP_001399394.2| ATP-dependent RNA helicase dbp2 [Aspergillus niger CBS 513.88]
          Length = 564

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 144/343 (41%), Gaps = 51/343 (14%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +     + A        G   +I+AP   LA Q    I K+ ++++I 
Sbjct: 181 AETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIR 240

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR- 405
              + G +P+  + + L R       + I T     D ++       ++  +++DE  R 
Sbjct: 241 NTCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRM 296

Query: 406 ----FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KI 448
               F  Q R  ++Q           AT P  +   A+      +  ++G +D+S   +I
Sbjct: 297 LDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRI 356

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           T+       I  V+    + D++I+ L+ ++        I    +   +      + RF 
Sbjct: 357 TQ-------IVEVVSDFEKRDKMIKHLEKIMENRANKCLIFTGTKRIADE-----ITRF- 403

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D + ++  + 
Sbjct: 404 -LRQDGWPALSI-HGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDY 461

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            +     +H++ GR GR     + I  +    SK +   +++L
Sbjct: 462 PNNSEDYVHRI-GRTGRAGAKGTAITFFTTDNSKQARDLVTIL 503


>gi|302383278|ref|YP_003819101.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193906|gb|ADL01478.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 521

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 128/298 (42%), Gaps = 32/298 (10%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++AP   LA Q     +KY + T++   ++ G +    +  AL +       ++I T
Sbjct: 75  RALVLAPTRELADQVAMSFEKYAKGTKLSWVLLIGGVSMGDQVAALNK----GVDVLIAT 130

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIP 432
                D  +  K++L     ++VDE  R    G    ++   K T P    L  +AT  P
Sbjct: 131 PGRLLDLFERGKMMLNGVELMVVDEADRMLDMGFIPDIERIFKLTPPKRQTLFFSATMPP 190

Query: 433 RTLVLTSLGDIDISKI-TEKPA-GRKPIKTVIIPINRIDEVIER--LKVVLSEG--KKAY 486
               LT     D ++I   +PA   + I   ++ I   D   +R  L+ +++    +   
Sbjct: 191 EITRLTQAFLKDPTRIEASRPAMTAETITQYLVRIPSSDPKAKRAALRELMARADVRNGI 250

Query: 487 WICPQIEEKKESNFRSVVERF-NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             C         N +S V+    SL +H   + A IHG +    +   +  F++G  K+L
Sbjct: 251 VFC---------NRKSEVDVVAKSLKQHGFDA-APIHGDLDQSLRTKTLADFRSGALKIL 300

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +A+ V   G+D+ D S +   +  H     +H++ GR GR  ++    ++  P   K+
Sbjct: 301 VASDVAARGLDIPDVSHVFNYDVSHHADDYVHRI-GRTGRAGKLGQAFMIVTPADDKS 357


>gi|256848949|ref|ZP_05554383.1| competence protein [Lactobacillus crispatus MV-1A-US]
 gi|256714488|gb|EEU29475.1| competence protein [Lactobacillus crispatus MV-1A-US]
          Length = 426

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 147/343 (42%), Gaps = 50/343 (14%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q++    ++Q+  Q+   L  +    G+GKT +    +A  ++ G +A I  P I +
Sbjct: 93  TPLQQNISDKLVQNFEQRKNTL--VHAVTGAGKTEMLFQLIARCMKKGQRACIATPRIDV 150

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK----ALERIAHGQAHIIIGTHALFQD 388
           + +    F   + Q     VEI      + H R+     LE++       I  TH L   
Sbjct: 151 VNELFPRFSAAFAQ-----VEI-----GKYHGREFKEIGLEQLT------ICTTHQL--- 191

Query: 389 SIQYYKLI-LVIVDEQHRFGVQQRLKLTQKA-----TAPHVLLMTATPIPRTLVLTSLGD 442
            +++Y+   L+++DE   F      +L   A     T    + +TATP    L+    G 
Sbjct: 192 -MKFYRAFDLLVIDEVDSFPYVGNPQLHFAAKNAVKTTGTRMYLTATPTNDLLLEAKTGK 250

Query: 443 IDISKITEK-PAGRKPI---KTVIIPINRIDEV----IERLKVVLSEGKKAYWICPQIEE 494
           ++I ++  +   G  P+   +  I P  R  ++    ++ +K V+  G       P+IEE
Sbjct: 251 LEILRLNRRFHGGLLPVPRERLFIRPFLRKGQIHPKLMQEIKKVIQSGHPLLLFVPRIEE 310

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                   +     +L +   + I +      D  +   + +F++    LL+ TT++E G
Sbjct: 311 --------IPLYQEALRKKLRNKIKLAGVHAQDPQRLEKVQAFRDRKYDLLLTTTILERG 362

Query: 555 IDVVDASIIIIENAEH-FGLAQLHQLRGRVGRGEEISSCILLY 596
           +   +  +III   +  +  A L Q+ GRVGR  +  + ++LY
Sbjct: 363 VTFKNVWVIIIAADDAIYTAASLVQIAGRVGRAHDDQTGLVLY 405


>gi|323516466|gb|ADX90847.1| primosomal protein N [Acinetobacter baumannii TCDC-AB0715]
          Length = 729

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +  + Q+ A + +L    Q    L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 189 LAQMPLTLNEDQKKATQHVLNAQHQYQAFL--LDGLTGSGKTEVYLHIMHEVLKQGKQVL 246

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F  ++  +    + ++   +  + R +A ++   G+A II+GT +
Sbjct: 247 VLVPEIGLTPQTISRFKSRFNCD----IALLHSGLNDSKRLQAWQQAQTGKASIILGTRS 302

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                +   +L L+I+DE+H    +Q+
Sbjct: 303 AIYTPLP--RLGLIILDEEHDLSYKQQ 327


>gi|322434403|ref|YP_004216615.1| ATP-dependent DNA helicase, RecQ family [Acidobacterium sp.
           MP5ACTX9]
 gi|321162130|gb|ADW67835.1| ATP-dependent DNA helicase, RecQ family [Acidobacterium sp.
           MP5ACTX9]
          Length = 587

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 12/104 (11%)

Query: 500 FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           + + V   + L++H T    S A  HG+M   D+E +   F +GT K++IAT    +GID
Sbjct: 243 YTASVRAADELYQHLTDQGISTAHYHGKMKTRDRELIQQEFMHGTHKVMIATKAFGLGID 302

Query: 557 VVDASIIIIENAEHF----GLAQLHQLRGRVGRGEEISSCILLY 596
             D   +      H+     L   +Q  GR GR  + +  +LLY
Sbjct: 303 KPDIRFVY-----HYEFPDSLETYYQEAGRAGRDGQPAHAVLLY 341


>gi|256113603|ref|ZP_05454423.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 535

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 162 RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 217

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 218 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 269

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 270 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 317

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 318 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 377

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 378 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|89093511|ref|ZP_01166459.1| primosome assembly protein PriA [Oceanospirillum sp. MED92]
 gi|89082201|gb|EAR61425.1| primosome assembly protein PriA [Oceanospirillum sp. MED92]
          Length = 731

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 20/206 (9%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++IL   P +    Q+  I+ I     Q    + +L+G  GSGKT V L A+   +  G 
Sbjct: 188 EQILHEAPLTLNSEQQLCIEHI---NGQHEFAINLLEGVTGSGKTEVYLQAIEKVLRQGK 244

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+++ P IG+  Q     + ++ Q   + +  +  NM    R  A  +   G A IIIG
Sbjct: 245 QALVLVPEIGLTPQT----VSRFKQRFSVPIVALHSNMTDRQRLDAWLQAREGIARIIIG 300

Query: 382 THALFQDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPI 431
           T +     ++   +I  I+DE+H          R+  +    +  +     V+L +ATP 
Sbjct: 301 TRSAIFTPMKAPGII--IIDEEHDASFKQQDGFRYSARDLSVMRARDEKIPVILGSATPS 358

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKP 457
             TL     G     ++T++     P
Sbjct: 359 LETLHNAIEGRYHWLRMTQRAGNSAP 384


>gi|325116173|emb|CBZ51727.1| putative ATP-dependent helicase, putaive [Neospora caninum
           Liverpool]
          Length = 395

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 139/336 (41%), Gaps = 49/336 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           P+  Q+ AI  I+     K R + I+Q   G+GKT V  +     ++      QA+I++P
Sbjct: 45  PSAVQQRAIVPIM-----KGRDV-IVQSQSGTGKTCVFCLGCLQCIDPKVRDPQALILSP 98

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HA 384
              LA+Q  +          + V    G        +ALE       HI+ GT     H 
Sbjct: 99  TRELAEQSQKVCLALGDYMSVQVHCCIGGKRVGDDIRALE----AGVHIVSGTPGRVFHM 154

Query: 385 LFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           + Q       + L+++DE       G ++++    +   P   V+L++AT     L +T+
Sbjct: 155 IAQRHFSTRHIKLLVLDEADEMLNRGFKEQVYDIYRYLPPSTQVVLVSATLPHEVLEMTT 214

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                  K  + P          + + R +  +E +K      ++  W    + +  ++ 
Sbjct: 215 -------KFMDDP--------FRVLVKRDELTLEGIKQFFVAVEREQWKFDTLTDLYDTL 259

Query: 499 ---------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N ++ VE      +    +++ +HG M   +++ +M  F+ G  ++LIAT 
Sbjct: 260 TITQAVIFCNTKAKVEWLAQKMKEANFTVSRMHGDMPQQERDEIMRQFRGGQSRVLIATD 319

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           V   G+DV   S++I  +  +     +H++ GR GR
Sbjct: 320 VWGRGLDVQQVSLVINYDLPNSRELYIHRI-GRSGR 354


>gi|304404872|ref|ZP_07386532.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304345751|gb|EFM11585.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 503

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 147/340 (43%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT  Q  AI  +L       R         GSGKTL  L+ M   +++     QAV++AP
Sbjct: 26  PTAVQSEAIAALLAGADVTAR------SQTGSGKTLAFLLPMLEQLDSASSAVQAVVLAP 79

Query: 330 IGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q     + Y +   I +V +I G    A   + +E +   +  +++GT     +
Sbjct: 80  TQELAMQITRVAQAYGEAVGIRVVSLIGG----AAMSRQVENLKKHKPQLVVGTPGRIHE 135

Query: 389 SIQYYKLIL-----VIVDEQHR---FGVQQRLKLTQKATAP--HVLLMTATPIPRTLV-- 436
                KL L     V++DE  +    G  + + +  K T+    V   +AT  P  +   
Sbjct: 136 LAAGRKLKLSSVTKVVIDEADQVFNLGSVREVDVILKGTSRERQVAFFSATR-PEEMAGM 194

Query: 437 ----LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV-IERLKVVLSEGKKAYWICPQ 491
               +     +D+S  T++ A  + IK   I +++ D+V + R  V L     A      
Sbjct: 195 ERKWMREPKLVDVSG-TQRVA--ESIKHHFIVVDKRDKVDVARRLVRLINPSAALLFLND 251

Query: 492 IEE--KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            E   + ES  R         +E F  S+ +++G  +   +   +D F++G+CKLL+AT 
Sbjct: 252 TENIAQWESKLR---------YEGF--SVEMLYGDANKQRRSVTLDRFRSGSCKLLLATD 300

Query: 550 VIEVGIDVVDASIIIIE----NAEHFGLAQLHQLRGRVGR 585
           V   G+D+    ++I      +A+H+    +H+  GR GR
Sbjct: 301 VAARGLDIEGLPLVINLDPPIDADHY----VHRA-GRTGR 335


>gi|228477005|ref|ZP_04061643.1| ATP-dependent RNA helicase [Streptococcus salivarius SK126]
 gi|228251024|gb|EEK10195.1| ATP-dependent RNA helicase [Streptococcus salivarius SK126]
          Length = 447

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 135/319 (42%), Gaps = 39/319 (12%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +   +       Q VI AP   LA Q Y+  K+  +++   + ++   
Sbjct: 47  TGSGKTHTFLLPIFEKLNPKSGDVQVVITAPSRELATQIYQATKQIAKHSDTEIRVVN-Y 105

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLK 413
           +    +++ +E++   Q HI+IGT     D ++   L +      +VDE         L 
Sbjct: 106 VGGTDKQRQIEKLKVAQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTMDMGFLD 165

Query: 414 LTQKATAP-----HVLLMTATPIPRTL---VLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
              K  A       +L+ +AT IP+ L   +   L +  + +I         I   ++  
Sbjct: 166 TVDKIAASLPKEVQILVFSAT-IPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVST 224

Query: 466 ---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IA 519
              N+ ++++E LK     G + Y             F +  ER + LH +  S+   +A
Sbjct: 225 KGRNKNEQILEMLK-----GMQPYLAMI---------FVNTKERADDLHSYLVSNGLKVA 270

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG +   +++ +M+  K    + ++AT +   GID+   S +I +         +H++
Sbjct: 271 KIHGGIPPRERKRIMNQVKKLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV 330

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR     + I LY P
Sbjct: 331 -GRTGRNGLSGTAITLYQP 348


>gi|256376393|ref|YP_003100053.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
 gi|255920696|gb|ACU36207.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
          Length = 561

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 127/320 (39%), Gaps = 32/320 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQA---VIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           Q   G+GKT    + ++   A VE  G A   +++ P   LA Q  E + +Y +     V
Sbjct: 53  QAATGTGKTAAFALPVLERLAQVEKRGDAPFALVLVPTRELAVQVSEAVHRYGRELGARV 112

Query: 353 EIITGNMPQAHRRKALER------IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
             I G  P   + + LER         G+A   +G   L  + +Q   ++L   DE    
Sbjct: 113 LPIYGGQPIGRQLRVLERGVDVVVATPGRAVDHLGRGTLNLEDLQV--VVLDEADEMLDM 170

Query: 407 GVQQRLK--LTQKATAPHVLLMTATPIPR-----TLVLTSLGDIDISKITEKPAGRKPIK 459
           G  + L   L +       +L +AT  PR        LT    I I++   +P     ++
Sbjct: 171 GFAEDLDTILAETPKQRQTVLFSATMPPRIDKLARQHLTEPARITINQERAEPGEAPRVR 230

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWI-CPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            V   + R  +     +V+  E   A  + C     +       + E  N       S  
Sbjct: 231 QVAYVVPRAHKPAALGRVLDVEAPTAAIVFC-----RTRDEVDQLTETLNGRGYRAES-- 283

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG +S   ++ VM   +NGT  LL+AT V   G+DV   + ++  N      + +H+
Sbjct: 284 --LHGGISQEQRDRVMARLRNGTADLLVATDVAARGLDVEQLTHVVNYNVPSAPESYVHR 341

Query: 579 LRGRVGRGEEISSCILLYHP 598
           + GRVGR       I L  P
Sbjct: 342 I-GRVGRAGREGVAITLAEP 360


>gi|296242576|ref|YP_003650063.1| DEAD/DEAH box helicase domain-containing protein [Thermosphaera
           aggregans DSM 11486]
 gi|296095160|gb|ADG91111.1| DEAD/DEAH box helicase domain protein [Thermosphaera aggregans DSM
           11486]
          Length = 935

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 135/320 (42%), Gaps = 49/320 (15%)

Query: 303 GSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           GSGKT  A+I +  ++   G      + + P+  L +   + +KK  +   + + +  G+
Sbjct: 42  GSGKTEAAVIPVMYSILKQGLKPIACIYVTPLRALNRDIEKRLKKLAECFGLEISLKHGD 101

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-------LVIVDEQHRFGVQQR 411
            P+  R+  LE+      HI++ T   F   +   +L         ++ DE H     +R
Sbjct: 102 TPEKTRKAILEK----PPHILVTTPENFNYIMVNERLAPSLANLRFIVFDEFHELLESKR 157

Query: 412 --LKLTQKATAPHVLLMTATPIPRTLVLTSL----------GDIDISKITEKPAGRKPIK 459
             L  T        L      I  +  L++L          GD   + + E  + +K   
Sbjct: 158 GLLAFTTTFLLEKRLGRRLVKIALSATLSNLDKAREIVGLGGD---ASVVEDSSVKKMSI 214

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKES-----NFRSVVERFNSLHE 512
           TV +P     E+  ++K ++ + ++A  I   IE  EK        N RS+ ER  SL +
Sbjct: 215 TVEVP-ECSSELCSKVKSLIGDERQAARISRIIELVEKHTGVLVFVNTRSLAERLGSLLK 273

Query: 513 HFTSSIA-------IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                +        + HG +S   +ESV  SFK    K L++T+ +E+GID+    ++I 
Sbjct: 274 TIPEKLGMQGLRVEVHHGSLSRSHRESVESSFKKREVKALVSTSSMELGIDIGHVDLVI- 332

Query: 566 ENAEHFGLAQLHQLRGRVGR 585
              ++    Q  +L  RVGR
Sbjct: 333 ---QYLSPRQATRLTQRVGR 349


>gi|198425852|ref|XP_002130131.1| PREDICTED: similar to p68 RNA helicase isoform 1 [Ciona
           intestinalis]
 gi|198425854|ref|XP_002130146.1| PREDICTED: similar to p68 RNA helicase isoform 2 [Ciona
           intestinalis]
          Length = 585

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 136/343 (39%), Gaps = 53/343 (15%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     + A        G  A+++ P   LAQQ       Y Q   I   
Sbjct: 160 TGSGKTLSFILPAMIHINAQPYLERGDGPIALVLCPTRELAQQVQAVANDYGQLCHIRNT 219

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G   +A + + LER       I+I T     D ++  K  L     +++DE  R   
Sbjct: 220 CVYGGASKAPQIRDLER----GCEIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLD 275

Query: 407 -GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G + +++            L   AT P  +   A    R  V   +G ++IS      A
Sbjct: 276 MGFEPQIRKIIDQIRPDRQTLMWSATWPKEVQKLANDFLRDNVHIQIGSVNIS------A 329

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----ESNFRSVVERFNS 509
               ++  I+ +   DE  E+L  ++ E      I  + E K     E+  +  +   N 
Sbjct: 330 NHNILQ--IVDVCTEDEKSEKLMRLMEE------IMGEAENKTIIFTETKRKCDILTRNM 381

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
             + + +    IHG  S  +++ V++ F+ G   +L+AT V   G+DV D   +I  +  
Sbjct: 382 RRDGWPA--MCIHGDKSQPERDWVLNEFRTGKSPILVATDVASRGLDVSDIKFVINFDFP 439

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     +H++ GR  R  +  +    +    +K     + +LK
Sbjct: 440 NQCEDYIHRI-GRTARANQTGTAYTFFTQANAKQCKDLIEILK 481


>gi|297271814|ref|XP_001110023.2| PREDICTED: sentrin-specific protease 3-like isoform 3 [Macaca
           mulatta]
          Length = 971

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 638 IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 697

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 698 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 754

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 755 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKK-FMRDPIR---I 799

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 800 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 859

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 860 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 910


>gi|264676543|ref|YP_003276449.1| primosomal protein N' [Comamonas testosteroni CNB-2]
 gi|262207055|gb|ACY31153.1| primosomal protein N' [Comamonas testosteroni CNB-2]
          Length = 723

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 33/227 (14%)

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAP-IGILAQ 335
           SA + ++ +  ++N    +L G  GSGKT V L A+ A ++A    QA++M P I +  Q
Sbjct: 165 SAEQSVVFEQIEQNPGPFLLYGSTGSGKTEVYLRAVQAVLDANPEAQALVMVPEINLTPQ 224

Query: 336 QHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYY 393
               F+ ++  Q  +  V  +   M    R K+      G+A I++GT  A+F    Q  
Sbjct: 225 LEERFVARFVPQYGKDAVVSMHSGMTNPQRLKSWLAAHTGRARIVLGTRMAIFASVPQ-- 282

Query: 394 KLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP-----------IP 432
            L L++VDE+H          R+  +       + T   V+L +ATP           + 
Sbjct: 283 -LALIVVDEEHDASYKQQEGARYSARDLAIWRGRDTGAKVILGSATPSLESWHASEPDVG 341

Query: 433 RTLVL---TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           R L L   + +G   + ++     G++P + V  P   I+ + ER+K
Sbjct: 342 RYLRLHMPSRIGAASLPRVRMVDMGQQPKRAVFSP-PLIEAITERVK 387


>gi|195403478|ref|XP_002060316.1| GJ16043 [Drosophila virilis]
 gi|194140655|gb|EDW57129.1| GJ16043 [Drosophila virilis]
          Length = 605

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 141/341 (41%), Gaps = 47/341 (13%)

Query: 302 VGSGKTLVAL------IAMAAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  +      I   A +E GG   A+++AP   LAQQ       +  ++ +   
Sbjct: 167 TGSGKTLAFILPAIVHIRGQAPLERGGGPIALVLAPTRELAQQIQSVANDFGSSSSVRNT 226

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR--- 405
            I G  P+  +   L+R       I+I T     D +Q       +   +++DE  R   
Sbjct: 227 CIFGGSPRTKQASDLQR----GVEIVIATPGRLLDFLQAGTTNLRRCTYLVLDEADRMMD 282

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGD-IDISKITEKPAGRKPIK 459
             F  Q R    Q       L+ +AT  P   R L    LG+ I I+  + + +    I+
Sbjct: 283 MGFEPQIRKIFGQIRPDRQTLMWSAT-WPKEVRQLAEDFLGNYIHINIGSMELSANHNIR 341

Query: 460 TVIIPINRIDEVIERLKVVLSE--------GKKAYWICPQIEEKKESNFRSVVERFNSLH 511
             +  +    E   +LK +LS         GK   ++  + +  K + F       N+L 
Sbjct: 342 QYV-EVCAEHEKGAKLKDLLSHIYDQAAMPGKIIIFVATKKKVDKLARF------INAL- 393

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                S+  IHG  S +D+++V++ F++G   +L+AT V   G+D+     +I  +    
Sbjct: 394 ---GVSVGSIHGDKSQMDRDNVLNDFRSGRANILVATDVAARGLDIDGIKYVINFDFPQS 450

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
               +H++ GR GR     +    +    +K +   + VL+
Sbjct: 451 SEDYIHRI-GRTGRNRSTGTSYAFFTRKNAKCARALIEVLR 490


>gi|160380699|sp|A7EYW0|DBP3_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp3
          Length = 596

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 138/345 (40%), Gaps = 47/345 (13%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKT+   +     + +        G +AV+++P   LA Q YE I K  + + + 
Sbjct: 223 AETGSGKTMAFAVPCVRYMSSLPKNQKNKGPRAVVVSPTRELAMQSYEQIVKLAKASGLE 282

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR- 405
              + G +P+  + +AL+      A I++ T     D I        K   V++DE  R 
Sbjct: 283 CVCVYGGVPKDEQIRALK-----TADIVVATPGRLNDLINQGCADLSKARYVVLDEADRM 337

Query: 406 ------------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
                              G +Q L  T  AT P  +   A+    + V  ++GD     
Sbjct: 338 LDKGFEEEIRKIINTTPSLGKRQTLMFT--ATWPESVRELASTFMTSPVKIAIGDNPTGD 395

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           +       + ++ V+ P ++   +++ LK   S  +K   I      KKE+       R 
Sbjct: 396 LRANSRIVQKVE-VVEPRDKEYRLMQLLKQYQSGSQKDDRILVFCLYKKEAT------RV 448

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                     +A IHG +S   +   +++FK+G   +L+AT V   G+D+    ++I   
Sbjct: 449 EGFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVINCT 508

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
                   +H++ GR GR  +    I L+       S   ++VLK
Sbjct: 509 FPLTVEDYVHRI-GRTGRAGKDGLAITLFTEHDKAQSGALINVLK 552


>gi|156044376|ref|XP_001588744.1| hypothetical protein SS1G_10291 [Sclerotinia sclerotiorum 1980]
 gi|160380622|sp|A7EY76|DBP5_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp5
 gi|154694680|gb|EDN94418.1| hypothetical protein SS1G_10291 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 470

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 147/353 (41%), Gaps = 75/353 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----AGGQAVIMA 328
           P+K QE A+  +L +         I Q   G+GKT   +I + + ++       QA+ +A
Sbjct: 92  PSKIQEKALPLLLGNPPTN----MIAQSQSGTGKTAAFVITILSRLDFSKPTTPQALCLA 147

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q    ++        I + + G   QA    A+ER A   A +I+GT     D
Sbjct: 148 PSRELARQIEGVVRS-------IGQFVEGLSVQAAIPGAVERNARVNAMVIVGTPGTVMD 200

Query: 389 -----SIQYYKLILVIVDE------QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                SI   ++ ++ +DE      Q   G  Q L++        +LL +AT  P     
Sbjct: 201 LIKRKSIDASQMKVLCLDEADNMLDQQGLG-DQCLRVKSMIKVEQILLFSAT-FPD---- 254

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                 ++    ++ + R          N I   ++R ++ +S  K+ +  CP    K E
Sbjct: 255 ------EVYGFAQQFSPRA---------NEIK--LKRDELTVSGIKQMFMDCPNEVGKYE 297

Query: 498 ------------SNFRSVVERFNSLH--EHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
                       S+   V  R  + H  E  T+    +A IHG     ++++V++ F+ G
Sbjct: 298 ILVKLYGLMTIGSSIIFVKRRDTASHIAERLTAEGHKVAAIHGAFEGAERDTVLEDFRQG 357

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ--------LHQLRGRVGR 585
             K+LI T V+  GIDV   S++I  +    G +         LH++ GR GR
Sbjct: 358 KAKVLITTNVLARGIDVQSVSMVINYDIPMKGRSDFEPDPETYLHRI-GRTGR 409


>gi|110633776|ref|YP_673984.1| DEAD/DEAH box helicase-like [Mesorhizobium sp. BNC1]
 gi|110284760|gb|ABG62819.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1]
          Length = 460

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 128/291 (43%), Gaps = 39/291 (13%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  + +++  +   +   ++ G +    R   ++R+A G   ++I T
Sbjct: 101 RALILVPTRELAVQIEKVVRELAKGAHVSTALVLGGV---SRHSQIKRMAQG-VDVLIAT 156

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIP 432
                D ++   ++L     +++DE  R    G    ++   KAT P     L +AT +P
Sbjct: 157 PGRLTDLVRDGAVVLSETTWLVLDEADRMLDMGFINDVRRIAKATHPARQTALFSAT-MP 215

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R +   +   +           ++P++  + P       I R  V+++  K+   +  ++
Sbjct: 216 REIEALASSLL-----------KEPVRIEVSPQGTTAAEI-RQSVIMARTKQKRKLLSEM 263

Query: 493 --EEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             +EK       S  +   +R     +H     A+IHG  S   ++  ++ F+ G  ++L
Sbjct: 264 LADEKMAQVIIFSRTKHGADRVTKDLQHDGFQAAVIHGNKSQNARQRALNDFREGAVRIL 323

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           +AT +   GIDV   S ++  +      + +H++ GR GR    GE I+ C
Sbjct: 324 VATDIAARGIDVPGISHVVNFDLPDEAESYVHRI-GRTGRNGAEGEAITLC 373


>gi|256369477|ref|YP_003106985.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|255999637|gb|ACU48036.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
          Length = 535

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 162 RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 217

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 218 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 269

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 270 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 317

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 318 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 377

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 378 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|254714133|ref|ZP_05175944.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|254716809|ref|ZP_05178620.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
          Length = 535

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 162 RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 217

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 218 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 269

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 270 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 317

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 318 RRLLSAMLTDADMRSVIVFTRTKHGADTVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 377

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 378 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|154685222|ref|YP_001420383.1| Yfml [Bacillus amyloliquefaciens FZB42]
 gi|154351073|gb|ABS73152.1| Yfml [Bacillus amyloliquefaciens FZB42]
          Length = 376

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 152/346 (43%), Gaps = 46/346 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           PT  QE A + I++          I +   G+GKTL   + +   +   +   Q +I+AP
Sbjct: 27  PTVIQEKAAQVIMEGKD------VIAESPTGTGKTLAYTLPVLERINPEQKHPQVIILAP 80

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q ++ I+ + + + +    + G    A+ +K +E++ + + HII GT     + 
Sbjct: 81  SRELVMQIFQVIQDWIKGSDLRALSLIGG---ANVKKQVEKLKN-KPHIIAGTPGRVLEL 136

Query: 390 IQYYKLIL-----VIVDE-------QHRFGVQQRLKLTQKATAPHVLLMTATPIPRT-LV 436
           IQ  KL +     +++DE       +HR  +++ +K T K     +L  +AT  P T  V
Sbjct: 137 IQAKKLKMHEVKTIVLDEADQLVTQEHRETMKKIIKTTLKDR--QLLSFSATLQPETEQV 194

Query: 437 LTSLG-DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           L ++  +  + K+    A +  +    +  ++ D+V    K+    G +A      I   
Sbjct: 195 LNTIAHEPAVLKVKRNTAEKARVTHQYLVCDQRDKVKLLQKLSRLNGMQALVFVRDI--- 251

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N     E+    H      + I+HG    +++  ++ +F+ G   LL+AT +   G+
Sbjct: 252 --GNLSVYAEKLAYHH----VDLGILHGEAKKMERAKILSAFERGEFPLLLATDIAARGL 305

Query: 556 DVVDASIII---IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           D+ D   +I   I N + +    +H+  GR GR  +  + + L  P
Sbjct: 306 DIDDLPYVIHADIPNEDGY----IHR-SGRTGRAGKEGTVLSLVTP 346


>gi|148560232|ref|YP_001258986.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|161619002|ref|YP_001592889.1| DEAD/DEAH box helicase domain-containing protein [Brucella canis
           ATCC 23365]
 gi|254701799|ref|ZP_05163627.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|256061140|ref|ZP_05451294.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|148371489|gb|ABQ61468.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
 gi|161335813|gb|ABX62118.1| DEAD/DEAH box helicase domain protein [Brucella canis ATCC 23365]
          Length = 535

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 162 RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 217

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 218 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 269

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 270 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 317

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 318 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 377

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 378 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|147902730|ref|NP_001084200.1| eukaryotic initiation factor 4A-III-B [Xenopus laevis]
 gi|82189798|sp|O42226|I4A3B_XENLA RecName: Full=Eukaryotic initiation factor 4A-III-B;
           Short=XeIF-4AIII; Short=eIF-4A-III-B; Short=eIF4A-III-B;
           AltName: Full=ATP-dependent RNA helicase DDX48-B;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3-B;
           AltName: Full=DEAD box protein 48-B; AltName:
           Full=Eukaryotic translation initiation factor 4A isoform
           3-B
 gi|2443810|gb|AAB71410.1| eukaryotic translation initiation factor XeIF-4AIII [Xenopus
           laevis]
          Length = 414

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 145/340 (42%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    +++   ++      QA+I+AP
Sbjct: 64  PSAIQQKAIKQII-----KGRDV-IAQSQSGTGKTATFCVSVLQCLDIQIRETQALILAP 117

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  + +        +      G     +  + + ++ +GQ H++ GT     D 
Sbjct: 118 TKELARQIQKVLLALGDYMNVQCHACIGG---TNVGEDIRKLDYGQ-HVVAGTPGRVFDM 173

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++    +   P   V L++AT     L +T+
Sbjct: 174 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTN 233

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGKKA 485
               D  +I  K      + IK   + + R +   + L             +  +  +K 
Sbjct: 234 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 293

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  ++L
Sbjct: 294 DWL---TEKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGASRVL 334

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 335 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 373


>gi|332978229|gb|EGK14960.1| ATP-dependent RNA helicase RhlE [Psychrobacter sp. 1501(2011)]
          Length = 383

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 134/314 (42%), Gaps = 35/314 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE------------AGGQAVIMAPIGILAQQHYEFIKKY 344
           I Q   G+GKT   LI +  A+                +AVI+AP   LA Q +E     
Sbjct: 46  IGQAQTGTGKTATFLITIIEALLKRPFAADEMRYLGEPRAVILAPTRELANQIFEDAIGL 105

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
           TQ+T +    I G +    +  AL+   H    I+I T     D I       V +D   
Sbjct: 106 TQHTDLHSVCIMGGVDYEKQTAALD---HAFTDILIATPGRLIDLIHKGH---VFLDRVE 159

Query: 405 RFGVQQRLKLTQKATAPHV----LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            F + +  ++      P +      M A    ++L+ ++  + D+  +  +     P+  
Sbjct: 160 AFVLDEADRMLDMGFIPDIKRLMRYMPANTDRQSLLFSATFNQDVMNLAYQWLS-NPVFV 218

Query: 461 VIIPINRIDEVIERLKVVLSEGKK--AYWICPQIEEKKE----SNFRSVVER-FNSLH-E 512
            I P ++  +++E+   +L+E  K  A       E+  +    +N +  V+R +N L  E
Sbjct: 219 EIKPEHKTSDLVEQHFYLLTESDKFKALNRILMAEDTHKVIVFANRKDQVKRLYNRLSAE 278

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           H   ++ ++ G +    +E  +D+FKNG  K+L+AT V   GI V D S ++        
Sbjct: 279 H---NVVMLSGDVDQSKRERYLDNFKNGDAKVLVATDVAGRGIHVDDISHVVNYTLPDQP 335

Query: 573 LAQLHQLRGRVGRG 586
              +H++ GR GR 
Sbjct: 336 DDYVHRI-GRTGRA 348


>gi|124430723|ref|NP_001037582.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
 gi|95102742|gb|ABF51312.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
          Length = 539

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 148/356 (41%), Gaps = 52/356 (14%)

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYE 339
           MS KN ++ + Q   GSGKTL  ++     +          G  A+++AP   LAQQ  +
Sbjct: 142 MSGKN-LVGVAQ--TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 198

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYK 394
               +   + +    + G  P+  + + LER       I+I T       L + +    +
Sbjct: 199 VAADFGHTSYVRNTCVFGGAPKREQARDLER----GVEIVIATPGRLIDFLEKGTTNLQR 254

Query: 395 LILVIVDEQHRF---GVQQRL-KLTQKATAPHVLLMTATPIPR---TLVLTSLGD---ID 444
              +++DE  R    G + ++ K+ ++       LM +   P+    L    LGD   I+
Sbjct: 255 CTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQIN 314

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           I  + +  A    ++  I+ I +  E   +L V+L E          I + +E   ++++
Sbjct: 315 IGSL-QLSANHNILQ--IVDICQEHEKENKLNVLLQE----------IGQSQEPGAKTII 361

Query: 505 --------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                   E  +     +      +HG  +  +++ V+  FK G   +L+AT V   G+D
Sbjct: 362 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLD 421

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           V     +I  +  +     +H++ GR GR +   +    + P  S+ +   +SVL+
Sbjct: 422 VDGIKYVINFDYPNSSEDYIHRI-GRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 476


>gi|88810926|ref|ZP_01126182.1| Primosomal protein n [Nitrococcus mobilis Nb-231]
 gi|88791465|gb|EAR22576.1| Primosomal protein n [Nitrococcus mobilis Nb-231]
          Length = 734

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 11/137 (8%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILA 334
           +Q  A++ I   ++    +L  L+G  GSGKT V L A+ A + AG Q +++ P IG+  
Sbjct: 207 AQSKAVRAITAALNNFQALL--LEGVTGSGKTEVYLAAIEAVLAAGRQTLLLVPEIGLTP 264

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYY 393
           Q     + ++T      + ++   +    R +A     +G A I+IGT  A+F       
Sbjct: 265 Q----LVARFTSRLDAPLAVLHSGLSDTERLEAWHAAGNGAAPIVIGTRSAVFAP---LA 317

Query: 394 KLILVIVDEQHRFGVQQ 410
           +  L++VDE+H   ++Q
Sbjct: 318 RPGLIVVDEEHDTSLKQ 334


>gi|313231677|emb|CBY08790.1| unnamed protein product [Oikopleura dioica]
          Length = 863

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 139/363 (38%), Gaps = 56/363 (15%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           +R + F  PT  Q +AI  IL        ++ I Q   GSGKT   +  +   V      
Sbjct: 244 IRKVGFLDPTPIQSTAIPQILAGRD----VIGIAQ--TGSGKTAGFVWPIIYHVTKQRPL 297

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQ 375
               G  A+IMAP   L QQ Y  ++K+ +N     V I  G +    + K L+      
Sbjct: 298 KYGDGPMALIMAPTRELCQQLYAEVRKFAKNYDSFRVGICFGGVNMYEQGKELKM----G 353

Query: 376 AHIIIGTHALFQDSI-----QYYKLILVIVDEQHR---FGVQQRLKLTQKATAP--HVLL 425
             I++ T     D +     +  K  ++ +DE  R    G + +++       P    L 
Sbjct: 354 VEILVATPGRLIDHVKKGNTELSKCTIICLDEADRMLELGFEPQVRSICNHVRPDKQCLF 413

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAG---RKPIKTVIIPINRIDEVIERLKVVLSEG 482
            +AT                 K+ E+ A      P+K     I +++E + +   +L + 
Sbjct: 414 FSAT---------------FKKVIERLATEVLNDPVKLTQGQIGQVNENVTQTFKILGQD 458

Query: 483 KKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +K  W+   I +         F +      ++HE    S     +IHG M   ++  V+ 
Sbjct: 459 QKLQWLLNNIVQLNSVGSLLVFVTRKADCVTVHEELKKSGYKTGVIHGDMHQAERNDVIK 518

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK      LIAT V   G+D+     +I  +        +H++ GR  R     + I L
Sbjct: 519 AFKKQQLATLIATDVAARGLDISHIKTVINYDPARNYDTHVHRV-GRTARAGNTGTAISL 577

Query: 596 YHP 598
             P
Sbjct: 578 LTP 580


>gi|240102927|ref|YP_002959236.1| ski2-like helicase [Thermococcus gammatolerans EJ3]
 gi|239910481|gb|ACS33372.1| ski2-type helicase, putative [Thermococcus gammatolerans EJ3]
          Length = 720

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 134/334 (40%), Gaps = 59/334 (17%)

Query: 302 VGSGKTLVALIAMAAA-VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
             SGKTLV+ I M    ++ GG+AV + P+  LA++ Y   K++ +   + V   TG+  
Sbjct: 48  TASGKTLVSEIVMVNKLIQEGGKAVYLVPLKALAEEKYREFKEW-EKLGLKVAATTGDYD 106

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQR---- 411
                        G+  II+ T   F   +++       + LV+ DE H  G   R    
Sbjct: 107 STDD-------WLGRYDIIVATAEKFDSLLRHGARWINDVKLVVADEVHLIGSYDRGATL 159

Query: 412 -LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA----GRKPIKTVIIPIN 466
            + LT       +L ++AT +     L    D  +     +P     G   + T+I    
Sbjct: 160 EMILTHMLGRAQILALSAT-VGNAEELAEWLDASLVVSDWRPVQLRRGVFHLGTLIWEDG 218

Query: 467 RID-----------EVIERLKVVL-------SEGKKAYWICPQIEEKKESNFRSVVERFN 508
           +++           + ++R K  L       S  K+A  +   +        +  +E   
Sbjct: 219 KVESYPENWYSLVVDAVKRGKGALVFVNTRRSAEKEALALSKLVSSHLTKPEKRALESLA 278

Query: 509 S-LHEHFTS---------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           S L ++ TS          +A  H  +S +++  + D+F+ G  K++ AT  +  G+++ 
Sbjct: 279 SQLEDNPTSEKLKRALRGGVAFHHAGLSRVERTLIEDAFREGLIKVITATPTLSAGVNLP 338

Query: 559 DASIIIIENAEHFGLA-------QLHQLRGRVGR 585
              +II +   + G         ++ Q+ GR GR
Sbjct: 339 SFRVIIRDTKRYAGFGWTDIPVLEIQQMMGRAGR 372


>gi|187736504|ref|YP_001878616.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426556|gb|ACD05835.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 400

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 74/338 (21%), Positives = 145/338 (42%), Gaps = 49/338 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAPI 330
           PT  QE AI  IL+      R L I     G+GKT    + +   ++  G  Q +++ P 
Sbjct: 24  PTPIQEQAIPIILE-----GRDL-IGASQTGTGKTAAFALPLLTRIQPIGKPQILVLEPT 77

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----L 385
             LA Q  E   +Y + T + V ++ G +    + + L++     A I++ T        
Sbjct: 78  RELADQVAESFAEYGEFTGLKVALLYGGVGYGKQTEDLKK----GADIVVATPGRLVDHF 133

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT------APHVLLMTATPIPRTLVLTS 439
           ++ ++++ ++  +++DE  R      L + +K            L  +AT  P   V+  
Sbjct: 134 YRCTMRFGEVKALVLDEVDRMLDMGFLPIVRKIVNLCPWEGRQTLFFSATMPP---VIAG 190

Query: 440 LGDIDISKITEKPAGRKPIKTVI------IPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
                ++   E    R+ +   I      + +++ DE++    + L +G     +     
Sbjct: 191 FAKWCLTDPAEVTIARREVAATISHAFYPVALDQRDELL----LALLKGTDFRSVMIFTR 246

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +KE++  +V       H  +   +A++H  +   ++   +  FK+G   +L+AT V   
Sbjct: 247 TRKEAD--AVCGMLK--HHGYRGEVAVMHSDIPQKERMEALKGFKSGKYDILVATDVAAR 302

Query: 554 GIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGE 587
           GID+   + +I     ENAE +    +H++ GR GR E
Sbjct: 303 GIDISGVTHVINYRVPENAEDY----VHRI-GRTGRAE 335


>gi|149639330|ref|XP_001510706.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46,
           partial [Ornithorhynchus anatinus]
          Length = 974

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 133/312 (42%), Gaps = 43/312 (13%)

Query: 302 VGSGKTLVALIAM------AAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+  L+ M        ++E G    AVIM P   LA Q  +  KK+++   + V 
Sbjct: 361 TGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKALGLRVV 420

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G    + +   L+R     A II+ T     D +           ++  V++DE  R
Sbjct: 421 CVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADR 476

Query: 406 F---GVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
               G + Q +++          +M +   PR +   +   ++           KP++  
Sbjct: 477 MFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILN-----------KPVEVQ 525

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS 517
           +   + +   +E+  +V+ E  K   +   +   +ES     F    E  + L +    +
Sbjct: 526 VGGRSVVCSDVEQQVIVIEEENKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRA 585

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 +HG +   D++S+++ FK+GTCKLL+AT+V   G+DV    +++  +  +    
Sbjct: 586 SYPCMSLHGGIDQYDRDSIINDFKSGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYED 645

Query: 575 QLHQLRGRVGRG 586
            +H+  GR GR 
Sbjct: 646 YVHRA-GRTGRA 656


>gi|28868793|ref|NP_791412.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213969602|ref|ZP_03397738.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           T1]
 gi|28852032|gb|AAO55107.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925698|gb|EEB59257.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           T1]
          Length = 453

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 158/375 (42%), Gaps = 56/375 (14%)

Query: 254 PINVEGKIAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           P+  E  + +++L+ +       PT  Q +AI   LQ      R LR+     GSGKT  
Sbjct: 8   PVFSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQ-----GRDLRV-TAQTGSGKTAA 61

Query: 310 ALIAM------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
            ++ +       A V    +AVI+ P   LAQQ  + +++++Q T +   +ITG      
Sbjct: 62  FVLPILNRLIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKV 121

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLK-- 413
           +   L ++      I+IGT     + +    L L     +++DE  R    G  + ++  
Sbjct: 122 QAAMLRKVPD----ILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERL 177

Query: 414 LTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAG-RKPIKTVIIPIN 466
             + A     +L +AT     L      VL     + ++ ++E  +G R  I T      
Sbjct: 178 AGECAGREQTMLFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITA----- 232

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHG 523
             D  + + +V+        W+      +K    +N +++ +R             ++HG
Sbjct: 233 --DHNVHKEQVL-------NWLLANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHG 283

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
                D+++ +D  K G  K+++AT V   G+DV    ++I  +    G   +H++ GR 
Sbjct: 284 DKDQKDRKAAIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRV-GRT 342

Query: 584 GR-GEEISSCILLYH 597
           GR G +  +  L+ H
Sbjct: 343 GRAGSDGLAISLICH 357


>gi|215426299|ref|ZP_03424218.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis T92]
 gi|289749550|ref|ZP_06508928.1| transcription-repair coupling factor [Mycobacterium tuberculosis
           T92]
 gi|289690137|gb|EFD57566.1| transcription-repair coupling factor [Mycobacterium tuberculosis
           T92]
          Length = 571

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F+ T  Q +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P 
Sbjct: 504 FTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 563

Query: 331 GILAQQH 337
            +LA QH
Sbjct: 564 TLLADQH 570


>gi|188994956|ref|YP_001929208.1| ATP-dependent exoDNAse alpha subunit [Porphyromonas gingivalis ATCC
           33277]
 gi|188594636|dbj|BAG33611.1| ATP-dependent exoDNAse alpha subunit [Porphyromonas gingivalis ATCC
           33277]
          Length = 471

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 3/104 (2%)

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKTLVALIAMA 315
           ++  +A++IL+N+PF+PT+SQ+SAI+ + + +  ++   + +L+G  G+GKT +    + 
Sbjct: 1   MDNYLAEQILKNLPFTPTQSQDSAIRSLAKYLFDREPYSVFLLRGYAGTGKTQLIASVVQ 60

Query: 316 AAVEAGGQAVIMAPIGILAQ--QHYEFIKKYTQNTQIIVEIITG 357
             +E G    ++AP G  A+    Y   + YT + QI      G
Sbjct: 61  TILEQGADCELLAPTGRAAKVLTTYTRHQAYTIHRQIYQATAAG 104


>gi|331270848|ref|YP_004397285.1| CRISPR-associated helicase Cas3 domain protein [Clostridium
           botulinum BKT015925]
 gi|329127566|gb|AEB77509.1| CRISPR-associated helicase Cas3 domain protein [Clostridium
           botulinum BKT015925]
          Length = 672

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 111/231 (48%), Gaps = 30/231 (12%)

Query: 397 LVIVDEQHRFGVQ------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++++DE H F ++      + LK  ++    ++ +M+A+ IP  ++      ++I+ +  
Sbjct: 324 IIVIDEIHCFDLRTFAFMMESLKYLRENFGINICIMSAS-IPTCMLEFMKETLNINTLIN 382

Query: 451 KPAGRKPIKTVIIPINRIDEVI----ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
                  I+     INR+D+ +    +++K  +   K+A  +C        +N  +  + 
Sbjct: 383 ADKEDFLIRH---HINRVDKELVNDLDKIKAAIENNKQA-LLCV-------NNVAASQKL 431

Query: 507 FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           F++L E +   +I +IHGR +  D+  +    KN  C +LI T  IEV +D +D  ++  
Sbjct: 432 FSNLKEQYPNKNIKLIHGRFNARDRSEIEKDLKN--CDVLIGTQAIEVSLD-IDYDVLYT 488

Query: 566 ENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           E A    L  L Q  GRV R GE+  + + +Y+     NS    +++  T+
Sbjct: 489 EMA---PLDALLQRFGRVNRKGEKGIADVYIYNKSKEYNSIYDNNIIDKTD 536


>gi|254719124|ref|ZP_05180935.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 535

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 162 RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 217

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 218 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 269

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 270 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 317

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 318 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 377

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 378 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|170580933|ref|XP_001895467.1| DEAD/DEAH box helicase family protein [Brugia malayi]
 gi|158597570|gb|EDP35685.1| DEAD/DEAH box helicase family protein [Brugia malayi]
          Length = 798

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 156/394 (39%), Gaps = 74/394 (18%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIM 327
           + P+K QE+A+  +L +      M  I Q   G+GKT   ++ M + V       Q + +
Sbjct: 424 YMPSKIQEAALPLLLVEPP----MNLIAQAQSGTGKTATFVLTMLSRVVPSNKWPQCLCL 479

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL--ERIAHGQA---HIIIGT 382
           AP   LA Q  + +KK ++            +P+   R A+  E+++ G+     IIIGT
Sbjct: 480 APTYELAMQIGQVVKKMSEF-----------LPEIEIRYAVKGEQMSRGEKIEEQIIIGT 528

Query: 383 HALFQDS------IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
                D       I   K+I +++DE      QQ  +   ++   H  L  +    ++L+
Sbjct: 529 PGKMLDWVTKLKVIDPSKIICLVLDEADVMISQQGHQ--DQSIRLHNELERSGAKYQSLL 586

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++  D  +    +            I  + ++  + R +  L   K+ Y  C   EEK 
Sbjct: 587 FSATYDESVRSFAD-----------YIIKDAVNITLRRDEQTLKNIKQYYVKCANREEKY 635

Query: 497 ESNF-----------------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           E+                   R   E   +        + ++HG M+  D+   +  FK+
Sbjct: 636 EAVMNLYGGLTIASAIIFCYTRKSAEWLAARMSQRGHDVTVLHGEMTIEDRARTIQQFKD 695

Query: 540 GTCKLLIATTVIEVGIDVVDASIII--------IENAEHFGLAQLHQLRGRVGRGEEISS 591
              K+LI T V   GIDV   S++I         +N +      +H++ GR GR  +   
Sbjct: 696 SIYKVLITTNVCARGIDVSQVSVVINYDPPVTFADNPQPDYETYIHRI-GRTGRFGKAGI 754

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            I L     S      LSV++   D F +A E L
Sbjct: 755 AINLVSDDFS------LSVIQRIGDYFGVAIESL 782


>gi|147784525|emb|CAN61726.1| hypothetical protein VITISV_032421 [Vitis vinifera]
          Length = 554

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 139/318 (43%), Gaps = 43/318 (13%)

Query: 302 VGSGKTLV----ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            GSGKTL      L+ +  A + G +AVI+ P   LA Q     KK  +  +  ++++T 
Sbjct: 170 TGSGKTLAFVCPMLMKLKHASKDGIRAVILCPTRELAAQTARESKKLAKGKKFYIKLLTK 229

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ 409
            + ++        I+     I+I T    + +I+  KL L     +++DE  +    G+ 
Sbjct: 230 ELLRSGD------ISKLPCDILISTPLRLRSAIRKKKLDLSRVEYLVLDESDKLFELGLV 283

Query: 410 QRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDI--DISKITEKPAGRKPIKTVIIPIN 466
           +++    KA + P ++        R+L   +L D   ++++     A    ++ +I   N
Sbjct: 284 KQIDAVVKACSNPSII--------RSLFSATLPDFVEELARTIMHDA----VRVIIGRKN 331

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-----FRSVVERFNSLHEHFTSS---I 518
              E+I++ K+V +  ++   +  +    +  N     F    ER   L+         +
Sbjct: 332 SASELIKQ-KLVFAGNEEGKLLALRQSFAESLNPPILLFVQSKERAKELYTELAFDDIRV 390

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            +IH  +S   +E+ +D F+ G   +LIAT VI  G+D    + +I  +      A +H+
Sbjct: 391 DVIHADLSQSQRENAVDDFRAGKTWVLIATDVIARGMDFKGINCVINYDFPDSPAAYIHR 450

Query: 579 LRGRVGRGEEISSCILLY 596
           + GR GR       I +Y
Sbjct: 451 I-GRSGRAGRTGEAITIY 467


>gi|197116585|ref|YP_002137012.1| primosomal protein N', ATP-dependent helicase [Geobacter
           bemidjiensis Bem]
 gi|197085945|gb|ACH37216.1| primosomal protein N', ATP-dependent helicase [Geobacter
           bemidjiensis Bem]
          Length = 752

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 17/146 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L G  GSGKT V L ++A A+ AG  A++M P   L  Q    + ++ +     + ++ 
Sbjct: 243 LLHGVTGSGKTEVYLQSIAVALAAGRSALVMVPEIALTPQ---LVGRFKRRFDCGIAVLH 299

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH----------R 405
             +    R     RI  G+A I+IG   ALF    +   + +++VDE+H          R
Sbjct: 300 SGLSDGERYDEWRRIRRGEASIVIGARSALFAPLTE---VGVIVVDEEHEGSYKQSEGVR 356

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPI 431
           +  +    +  K     V+L +ATP+
Sbjct: 357 YNARDLALVRGKLAGAVVILGSATPL 382


>gi|45383077|ref|NP_989880.1| eukaryotic initiation factor 4A-II [Gallus gallus]
 gi|82213243|sp|Q8JFP1|IF4A2_CHICK RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|21435808|gb|AAM53975.1|AF515726_1 translational eukaryotic inititation factor 4AII [Gallus gallus]
 gi|53132817|emb|CAG31939.1| hypothetical protein RCJMB04_14a6 [Gallus gallus]
          Length = 407

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 131/291 (45%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 74  IAQAQSGTGKTATFAISILQQLEIDLKETQALVLAPTRELAQQIQKVILALGDYMGATCH 133

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 134 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 190

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK +T   V+L++AT +P          +D+ ++T+K   R+PI+   I
Sbjct: 191 RGFKDQIYEIFQKLSTNIQVVLLSAT-MP----------MDVLEVTKKFM-REPIR---I 235

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 236 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHA 295

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 296 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 346


>gi|19075484|ref|NP_587984.1| U5 snRNP-associated protein Prp28 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74654533|sp|Q9Y7T7|PRP28_SCHPO RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|4539604|emb|CAB40015.1| U5 snRNP-associated protein Prp28 (predicted) [Schizosaccharomyces
           pombe]
          Length = 662

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 165/391 (42%), Gaps = 61/391 (15%)

Query: 264 KILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-- 320
           K+L+ + +  P+  Q +AI  +LQ      R   I   + GSGKT   +I +  A+    
Sbjct: 262 KVLKKVNYKEPSSIQRAAIPVLLQ------RKDLIGIAETGSGKTAAFIIPLIIAISKLP 315

Query: 321 ---------GGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALER 370
                    G  AV++AP   LAQQ      K+ +      V ++ G+   A   ++ + 
Sbjct: 316 PLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGH---AFEEQSFQ- 371

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF----------GVQQRLKLT 415
           ++ G AHI++ T     D ++    +L     V++DE  R            +   L  +
Sbjct: 372 MSQG-AHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSS 430

Query: 416 QKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-IDEV 471
             +     +L TA       +T++ ++     ++ +  K    +P+   I  I + +D V
Sbjct: 431 NASEKDGSILATANSSSSRRQTIMFSATLPPRVANLA-KSYLIEPVMLTIGNIGQAVDRV 489

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKES-----------NFRSVVERFNSLHEHFTSSIAI 520
            +R++++  + KK   +   +E  + S           N  ++ ++ N++  H  +    
Sbjct: 490 EQRVEMISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVT---- 545

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG  S   +E  ++  +N T  +L+AT +   GID+ + S+++  N         H++ 
Sbjct: 546 LHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRI- 604

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           GR GR  +  + I    P    + Y  L VL
Sbjct: 605 GRTGRAGKSGTAITFLGPE-DTDVYYDLRVL 634


>gi|294665477|ref|ZP_06730761.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292604731|gb|EFF48098.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 648

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 129/319 (40%), Gaps = 35/319 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + +++ A   +   QA+++AP   LA Q  E  +KY +      V  
Sbjct: 68  QAQTGTGKTAAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLP 127

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF 406
           + G  P A +  AL+R      H+++GT     D +        Q   L+L   DE  R 
Sbjct: 128 VYGGQPYAQQLSALKR----GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRM 183

Query: 407 G----VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD---IDISKITEKPAGRKPIK 459
           G    V+  LK   +     +   T  P  R +  T L D   + I+  T   A  +   
Sbjct: 184 GFIDDVEAVLKKLPEQRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY 243

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
             +  ++++D +   L+V   +G   +           +  ++  E      +    + A
Sbjct: 244 WWVSGLHKLDALTRILEVEPFDGMIIF-----------ARTKAATEELAQKLQARGMAAA 292

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I+G M    +E  +   K+G   +L+AT V   G+DV   S ++  +  +   + +H++
Sbjct: 293 AINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRI 352

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       IL   P
Sbjct: 353 -GRTGRAGRNGDAILFVTP 370


>gi|289432237|ref|YP_003462110.1| primosomal protein N' [Dehalococcoides sp. GT]
 gi|288945957|gb|ADC73654.1| primosomal protein N' [Dehalococcoides sp. GT]
          Length = 815

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 111/255 (43%), Gaps = 35/255 (13%)

Query: 274 TKSQESAIKDILQDMS-----QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +  QE  ++ I + ++      +N    +L G  GSGKT + L A+A A+  G +A+++ 
Sbjct: 278 SPPQEKCLESINRSLNTPPEDDQNPRTFLLHGITGSGKTEIYLQALAEALRLGKKAIVLV 337

Query: 329 P-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALF 386
           P I +  Q    F  ++       V ++   +    +    +RI +GQA I+IG   ALF
Sbjct: 338 PEISLTPQTIARFAGRFPGR----VAVLHSRLSPGEQFDEWQRIKNGQADIVIGPRSALF 393

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID-- 444
                  K  ++I+DE+H +  +Q+    +  T    L MT       ++ ++  DID  
Sbjct: 394 AP---LDKPGIIIIDEEHEWTYKQQNPQPRYHTRTVALKMTEEYGAVLVLGSATPDIDSY 450

Query: 445 ------ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                 + ++ E P    P +   +P   + +    ++  LSEG ++ +           
Sbjct: 451 FKAQNGLYQLLELPERLTPYRGASLPKTELVD----MRTELSEGNRSIF---------SR 497

Query: 499 NFRSVVERFNSLHEH 513
           N  + +E+  + HE 
Sbjct: 498 NLHASIEKVLAKHEQ 512


>gi|193208216|ref|NP_506383.2| hypothetical protein F58G11.2 [Caenorhabditis elegans]
          Length = 958

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 136/331 (41%), Gaps = 77/331 (23%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q +E ++ Y QNT IIV +  G   Q+ R ++L  I +G   I+IGT 
Sbjct: 460 ALILAPTRELAAQIHEALRTYCQNTDIIVLLSYG---QSDRARSLNEIRNG-CDILIGTC 515

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH-------VLLMTATPI 431
               D      I    L  ++ DE  R      L+  +K    H          M +   
Sbjct: 516 GRIMDFTVKSHISLLHLRFLVFDEADRL-----LQDMKKDPLGHLGAIIKDAGFMESAAT 570

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA------ 485
            +T++ ++  +  +  +  +   R P +         DE+I   K+VL+ G+ +      
Sbjct: 571 RQTIMTSATFNASVMTVANELMKRLPGQ---------DEMI---KIVLANGRLSKRVNLE 618

Query: 486 YWICPQIEEKKESNFRSVV------------------ERFNSLHEHFTSS---IAIIHGR 524
           ++ C  + EK  +  R ++                  ++ ++     TS       +HG 
Sbjct: 619 FFECKGLAEKN-AKLREILKQNVNGKTLKTIIFVQKKDQCDACAAKLTSGGMLAQTLHGD 677

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII---------IENAEHFGLAQ 575
            S   +E +++ FK+    LL+ T ++  GIDV D   +I          + A+ F    
Sbjct: 678 RSQDMREKLINDFKSNRVNLLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQGADTF---- 733

Query: 576 LHQL--RGRVGRGEEISSCILLYHPPLSKNS 604
           +H+    GR GR +E   C+    P   ++S
Sbjct: 734 IHRAGRTGRTGR-KENGLCVSFVDPQSDRDS 763


>gi|26991217|ref|NP_746642.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986267|gb|AAN70106.1|AE016650_5 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 440

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 154/355 (43%), Gaps = 58/355 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV-ALIAMAAAVEAGG-----QAVI 326
           PT  Q +AI   LQ      R LR+     GSGKT    L  +   V+  G     +A+I
Sbjct: 23  PTPVQAAAIPLALQ-----GRDLRV-TAQTGSGKTAAFVLPLLNRLVDLSGPRVEIRALI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + ++ ++Q T I   ++TG      +   L ++      ++IGT    
Sbjct: 77  LLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRKVPD----VLIGTPGRL 132

Query: 387 QDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATA--PHVLLMTATPIPRTLV 436
            + +    L L     +I+DE  R    G  + ++   K        LL +AT       
Sbjct: 133 LEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGG---- 188

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE--RLKVVLSEGKK-----AYWIC 489
             +L DI I K+ + P          + +N + ++ E  R +++ ++  +     A W+ 
Sbjct: 189 -AALRDI-IGKVLKDPEH--------LMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLL 238

Query: 490 PQIEEKKE---SNFRSVVERFNSLHEHFTSSIA---IIHGRMSDIDKESVMDSFKNGTCK 543
                 K    +N R++ +R   ++ H  +      ++HG     D++  ++ FK G+ K
Sbjct: 239 ANETFDKAIIFTNTRAMADR---IYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSK 295

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
           +L+AT V   G+D+    ++I  +    G   +H++ GR GR G E  +  L+ H
Sbjct: 296 VLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRV-GRTGRAGGEGLAISLITH 349


>gi|307202009|gb|EFN81574.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
          Length = 724

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 144/337 (42%), Gaps = 41/337 (12%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G   +I+AP   LAQQ     + +  ++ I   
Sbjct: 154 TGSGKTLAYILPATVHINHQPRLSRGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNT 213

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR--- 405
            I G  P+  + + LER       I I T       L + +    +   +++DE  R   
Sbjct: 214 CIFGGSPKGPQARDLER----GVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLD 269

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKP 457
             F  Q R  + Q      VL+ +AT  P+ +       LT    I+I  +T   A    
Sbjct: 270 MGFEPQIRKIIEQIRPDRQVLMWSAT-WPKEVQALAEDFLTDYIQINIGSLTL--AANHN 326

Query: 458 IKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           I+  I+ I +  E   +L  +L E   ++   +   +E KK+     V +   ++     
Sbjct: 327 IRQ-IVEICQEHEKETKLSQLLREIGTERGSKMIIFVETKKK-----VDDITKAIKREGW 380

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           S+I+I HG  S  +++ V+  F+NG   +L+AT V   G+DV D   +I  +  +     
Sbjct: 381 SAISI-HGDKSQPERDYVLSEFRNGKTMILVATDVAARGLDVEDVKYVINFDYPNSSEDY 439

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +H++ GR GR +   +    + P  ++ +   ++VL+
Sbjct: 440 IHRI-GRTGRCQSAGTAYAYFTPNNARQAKELIAVLE 475


>gi|126640446|ref|YP_001083430.1| ATP-dependent primosomal protein N' [Acinetobacter baumannii ATCC
           17978]
          Length = 649

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +  + Q+ A + +L    Q    L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 109 LAQMPLTLNEDQKKATQHVLNAQHQYQAFL--LDGLTGSGKTEVYLHIMHEVLKQGKQVL 166

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q     I ++       + ++   +  + R +A ++   G+A II+GT +
Sbjct: 167 VLVPEIGLTPQT----ISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRS 222

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                +   +L L+I+DE+H    +Q+
Sbjct: 223 AIYTPLP--RLGLIILDEEHDLSYKQQ 247


>gi|91199667|emb|CAI78022.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
 gi|96771714|emb|CAI78296.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
 gi|117164259|emb|CAJ87801.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
 gi|126347371|emb|CAJ89079.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
          Length = 499

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 140/334 (41%), Gaps = 46/334 (13%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  +    +++ P   LAQQ  + +  Y ++ ++ +
Sbjct: 112 RGRTGSGKTLAFGLALLARTAKRRAEARQPLGLVLVPTRELAQQVTDALTPYARSVKLRL 171

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHR-- 405
             + G MP   +  AL     G A I++ T    +D I     +  ++ + ++DE  +  
Sbjct: 172 ATVVGGMPIGRQASALR----GGAEIVVATPGRLKDLITRGDCRLDQVAVTVLDEADQMA 227

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIK 459
              F  Q    L Q       +L +AT + R    LV   L D  +  +         ++
Sbjct: 228 DMGFMPQVTALLDQVRPEGQRMLFSAT-LDRNVDLLVRRYLSDPVVHSVDPSAGAVTTME 286

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517
             ++ ++  D+     ++   +G+   ++          + +  V+R   L EH  +S  
Sbjct: 287 HHVLHVHGADKHAATTEIAARDGRVLMFL----------DTKHAVDR---LTEHLLNSGV 333

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI--DVVDASIIIIENAEHFGLA 574
             A +HG  S   +   +  FK+G   +L+AT V   GI  D +D  + +    +H    
Sbjct: 334 RAAALHGGKSQPQRTRTLTQFKDGHVSVLVATNVAARGIHVDSLDLVVNVDPPTDHKDY- 392

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            LH+  GR  R  E  S + L   P  +   TRL
Sbjct: 393 -LHR-GGRTARAGESGSVVTLVT-PNQRRGMTRL 423


>gi|326794221|ref|YP_004312041.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326544985|gb|ADZ90205.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 453

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 142/334 (42%), Gaps = 38/334 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +PT  QE AI +ILQ          I     GSGKT    + +  A++ G +A       
Sbjct: 50  APTSIQEQAIPEILQGHD------LIATAQTGSGKTAAFCLPILQALKDGEKAKPNHVRC 103

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+AP   LA Q    IK + ++  +  ++I G +    +RK L+R     + I++ T  
Sbjct: 104 LIIAPTRELAIQLNANIKAFNEHLTLRHQVIFGGVRVLPQRKYLKR----GSDILVATPG 159

Query: 385 LFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPH--VLLMTATPIP-- 432
              D      I +  L  +++DE  R    G  + L    +A       LL +AT  P  
Sbjct: 160 RLLDLHQRGDILFDSLTHLVLDEADRLLDLGFAKELDQIIQALPKQRQTLLFSATFAPPI 219

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           + L    L         +K A +  I   + P+++  +  E L  +L+    A  I    
Sbjct: 220 KKLAKKILNQPKDVTTIQKAAAKPNINQWLHPVDKKRKT-ELLLELLNRKPHAQVIV-FT 277

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
             KK ++  +      +L++   S+ A+   R  D ++  V D FKN    +L+AT V  
Sbjct: 278 NTKKNADLVA-----QALNQDGISAGALHSDRTQD-ERIHVFDQFKNNEISILVATDVAA 331

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            GID+ +  ++I  +        +H++ GR GR 
Sbjct: 332 RGIDIQNLPLVINYDLPKVSEDYIHRI-GRTGRA 364


>gi|325521922|gb|EGD00628.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. TJI49]
          Length = 464

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 137/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ + ++A     QA+++ P   LA Q  + +++  +  + + V
Sbjct: 48  IAQAKTGSGKTAAFSLALLSRLDARRFDVQAMVLCPTRELADQVAQEVRRLARAEENVKV 107

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFG 407
             + G  P   + ++LE   HG AHI++GT     D     ++Q   L  +++DE  R  
Sbjct: 108 LTLCGGTPMRPQAQSLE---HG-AHIVVGTPGRIMDHLDRGNLQLDALNTLVLDEADRML 163

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K      +     P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 164 DMGFFDDIAK------VARLCPPTRQTLLFSATYPDGIAKLSQQFL-RNP-KEVKLEERH 215

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 216 DDSKIRQRFYEVTETERLHAVGMLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 275

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 276 -HGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI- 333

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 334 GRTGRADQ 341


>gi|229170156|ref|ZP_04297843.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH621]
 gi|228613301|gb|EEK70439.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH621]
          Length = 481

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 134/328 (40%), Gaps = 50/328 (15%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLACLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP---IKT 460
             F  Q    + +  T    +L +AT +P           D+ K++ K         IK 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPE----------DVEKLSRKYMDSPTHIEIKA 209

Query: 461 VIIPINRIDEVI------ERLK----VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             I  ++I+  +      E+L     V  +E   +  I  + +E  +  F+ + +R N  
Sbjct: 210 AGITTDKIEHTLFETREEEKLSLLKDVTTTENPDSCIIFCRTQENVDHVFKQL-DRVNYP 268

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            +        IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +   
Sbjct: 269 CDK-------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPL 321

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP 598
              + +H+  GR GR       I    P
Sbjct: 322 EKESYVHRT-GRTGRAGNNGKAITFMTP 348


>gi|237831253|ref|XP_002364924.1| ATP-dependent helicase, putative [Toxoplasma gondii ME49]
 gi|211962588|gb|EEA97783.1| ATP-dependent helicase, putative [Toxoplasma gondii ME49]
 gi|221487231|gb|EEE25477.1| ATP-dependent helicase, putative [Toxoplasma gondii GT1]
 gi|221506914|gb|EEE32531.1| ATP-dependent helicase, putative [Toxoplasma gondii VEG]
          Length = 395

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 139/336 (41%), Gaps = 49/336 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           P+  Q+ AI  I+     K R + I+Q   G+GKT V  +     ++      QA+I++P
Sbjct: 45  PSAVQQRAIVPIM-----KGRDV-IVQSQSGTGKTCVFCLGCLQCIDPKVRDPQALILSP 98

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HA 384
              LA+Q  +          + V    G        +ALE       HI+ GT     H 
Sbjct: 99  TRELAEQSQKVCLALGDYMSVQVHCCIGGKRVGDDIRALE----AGVHIVSGTPGRVFHM 154

Query: 385 LFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           + Q       + L+++DE       G ++++    +   P   V+L++AT     L +T+
Sbjct: 155 IAQRHFSTRHIKLLVLDEADEMLNRGFKEQVYDIYRYLPPSTQVVLVSATLPHEVLEMTT 214

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                  K  + P          + + R +  +E +K      ++  W    + +  ++ 
Sbjct: 215 -------KFMDDP--------FRVLVKRDELTLEGIKQFFVAVEREQWKFDTLTDLYDTL 259

Query: 499 ---------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N ++ VE      +    +++ +HG M   +++ +M  F+ G  ++LIAT 
Sbjct: 260 TITQAVIFCNTKAKVEWLAQKMKEANFTVSRMHGDMPQQERDEIMRQFRGGQSRVLIATD 319

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           V   G+DV   S++I  +  +     +H++ GR GR
Sbjct: 320 VWGRGLDVQQVSLVINYDLPNSRELYIHRI-GRSGR 354


>gi|148546618|ref|YP_001266720.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148510676|gb|ABQ77536.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 453

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 154/355 (43%), Gaps = 58/355 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV-ALIAMAAAVEAGG-----QAVI 326
           PT  Q +AI   LQ      R LR+     GSGKT    L  +   V+  G     +A+I
Sbjct: 36  PTPVQAAAIPLALQ-----GRDLRV-TAQTGSGKTAAFVLPLLNRLVDLSGPRVEIRALI 89

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + ++ ++Q T I   ++TG      +   L ++      ++IGT    
Sbjct: 90  LLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRKVPD----VLIGTPGRL 145

Query: 387 QDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATA--PHVLLMTATPIPRTLV 436
            + +    L L     +I+DE  R    G  + ++   K        LL +AT       
Sbjct: 146 LEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGG---- 201

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE--RLKVVLSEGKK-----AYWIC 489
             +L DI I K+ + P          + +N + ++ E  R +++ ++  +     A W+ 
Sbjct: 202 -AALRDI-IGKVLKDPEH--------LMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLL 251

Query: 490 PQIEEKKE---SNFRSVVERFNSLHEHFTSSIA---IIHGRMSDIDKESVMDSFKNGTCK 543
                 K    +N R++ +R   ++ H  +      ++HG     D++  ++ FK G+ K
Sbjct: 252 ANETFDKAIIFTNTRAMADR---IYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSK 308

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
           +L+AT V   G+D+    ++I  +    G   +H++ GR GR G E  +  L+ H
Sbjct: 309 VLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRV-GRTGRAGGEGLAISLITH 362


>gi|315222026|ref|ZP_07863937.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
 gi|315188992|gb|EFU22696.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
          Length = 447

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 136/316 (43%), Gaps = 33/316 (10%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYT--QNTQIIVEIIT 356
            GSGKT   L+ +   +       Q VI AP   LA+Q Y+  ++     + +I V    
Sbjct: 47  TGSGKTHTFLLPIFQKLNEDADSVQVVITAPSRELARQIYQAARQIAAFSDKEIRVAHYV 106

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G      + + + +++  Q HI+IGT     D ++   L+   + + H F V +      
Sbjct: 107 GG---TDKNRQIGKLSSSQPHIVIGTPGRIYDLVESGDLV---IHKAHTFVVDE-----A 155

Query: 417 KATAPHVLLMT----ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
             T     LMT    A+ +P+ L           K+  +P  +K +   +I   +I  VI
Sbjct: 156 DMTLDMGFLMTVDKIASSLPKDLQFLVFSATIPQKL--QPFLKKYLSNPVIEQIKIKTVI 213

Query: 473 ERL---KVVLSEGK----KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIH 522
                  ++ ++G+    + Y I   ++      F +   R + LH + T+    +A IH
Sbjct: 214 SDTIENWLISTKGRDKNAQIYKITQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIH 273

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G ++  +++ +M+  KN   + ++AT +   GID+   S +I +         +H++ GR
Sbjct: 274 GDIAPRERKRIMNQVKNLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GR 332

Query: 583 VGRGEEISSCILLYHP 598
            GR     + I LY P
Sbjct: 333 TGRNGLPGTAITLYQP 348


>gi|190407035|gb|EDV10302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|207345345|gb|EDZ72198.1| YGL078Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259146428|emb|CAY79685.1| Dbp3p [Saccharomyces cerevisiae EC1118]
          Length = 523

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 142/321 (44%), Gaps = 37/321 (11%)

Query: 300 GDVGSGKTL---VALIA--MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            + GSGKT    V  I+  M    + G Q ++++P   LA Q Y+ +   T    +    
Sbjct: 156 AETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCC 215

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF--- 406
           + G +P+  +R  L++     + +++ T     D     S+   ++  +++DE  R    
Sbjct: 216 VYGGVPKDEQRIQLKK-----SQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEK 270

Query: 407 GVQQRLK---LTQKATAPHVLLMTATPIP---RTLVLTSLGD---IDISKITEKPAGRK- 456
           G ++ +K       A+    L+ TAT  P   R L  T + +   + I    +  A ++ 
Sbjct: 271 GFEEDIKNIIRETDASKRQTLMFTAT-WPKEVRELASTFMNNPIKVSIGNTDQLTANKRI 329

Query: 457 -PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             I  V+ P  +  +++E LK   S  KK   +      KKE+   + VER N  +  + 
Sbjct: 330 TQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEA---ARVER-NLKYNGY- 384

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            ++A IHG +S   +   ++ FK+G   LL+AT V   G+D+ +   +I           
Sbjct: 385 -NVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDY 443

Query: 576 LHQLRGRVGRGEEISSCILLY 596
           +H++ GR GR  +  +   L+
Sbjct: 444 VHRI-GRTGRAGQTGTAHTLF 463


>gi|167384810|ref|XP_001737104.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165900258|gb|EDR26629.1| hypothetical protein EDI_271170 [Entamoeba dispar SAW760]
          Length = 375

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 245 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 300

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 301 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 354


>gi|39933258|ref|NP_945534.1| primosome assembly protein PriA [Rhodopseudomonas palustris CGA009]
 gi|39652883|emb|CAE25625.1| putative priA family helicase (primosomal protein N', replication
           factor Y) [Rhodopseudomonas palustris CGA009]
          Length = 736

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 28/201 (13%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGI-PINVEGKIAQKILRNIPF-----SPTK 275
           +PAR RL   E+L+    LL  +    KE G+ P  ++G + +  L+  P      +P  
Sbjct: 139 TPARRRLL--EILSD--GLLHGKSDVAKEAGVSPGVIDGLVDEGTLQVEPMPRENPAPEP 194

Query: 276 SQESAIKDILQDMSQKNRMLR-----------ILQGDVGSGKTLVALIAMAAAVEAGGQA 324
             + A  D   + ++    +R           ++ G  GSGKT V   A+A  V  G Q+
Sbjct: 195 DPDFAPADFSPEQARAAETMRGLVTAGGFQAALIDGVTGSGKTEVYFEAVAEVVRQGRQS 254

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   L  Q   F+ ++ Q   +        +    R +    IA G+A +++G  +
Sbjct: 255 LILMPEIALTGQ---FLDRFAQRFGVRPLEWHSELTPRTRARNWASIAAGEARVVVGARS 311

Query: 385 -LFQDSIQYYKLILVIVDEQH 404
            LF   + Y  L L+IVDE+H
Sbjct: 312 SLF---LPYADLGLIIVDEEH 329


>gi|288553943|ref|YP_003425878.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288545103|gb|ADC48986.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 385

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 137/329 (41%), Gaps = 35/329 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           PT  Q   I + LQ  S       I +   G+GKTL  L+   A +   E G Q +I+AP
Sbjct: 26  PTDIQAKMIPEALQGQSI------IARSQTGTGKTLAFLLPALAKINSKEKGLQVLILAP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E  ++ T+   I +    G    A+ ++ LER+   +  + +GT     + 
Sbjct: 80  TQELAMQIVEVARELTKEAPIEIGSFIGG---ANVKRQLERLKKKKPQLAVGTPGRVLEL 136

Query: 390 IQYYKLIL-----VIVDEQHRFGVQQR-----LKLTQKATAPHVLLMTATPIPRTL--VL 437
           +   KL L     V VDE  R   ++       ++ ++A      L  +  +P     ++
Sbjct: 137 VDMKKLKLHELKVVAVDEADRMLGEKSSWDAFTEIAKRAGRDRQFLFVSATLPDDFADMI 196

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKK 496
            S     +    E       I+ ++I +   + V    K++ +E  +K      Q+E+  
Sbjct: 197 ASFAPFTVEMEAEGGLLVDHIEHLLIRVEARERVDMARKLIHAEKIEKGIVFVNQLEKLA 256

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           E+  + V  +  +         A +    +  ++E  ++ F+ G   +L+AT +   G+D
Sbjct: 257 ETTEKLVYRKIKA---------ASLSSDSTKQEREKALNQFRKGDIHILVATDIAARGLD 307

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           V D + II  +      + LH+  GR GR
Sbjct: 308 VDDVTHIIQLDPPASPDSYLHRA-GRTGR 335


>gi|197284022|ref|YP_002149894.1| ATP-dependent RNA helicase DbpA [Proteus mirabilis HI4320]
 gi|194681509|emb|CAR40383.1| ATP-independent RNA helicase [Proteus mirabilis HI4320]
          Length = 457

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 132/325 (40%), Gaps = 48/325 (14%)

Query: 299 QGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIV 352
           Q   GSGKT    + +   ++A     Q++++ P   LA Q       + ++  N +I+ 
Sbjct: 46  QAKTGSGKTAAFGLGLLQRIDAKQFNTQSLVLCPTRELADQVANELRRLARFLPNIKILT 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P + +R +L    H  AHII+ T     D +    + L     +++DE  R  
Sbjct: 106 --LCGGVPFSIQRDSL---IHA-AHIIVATPGRLLDHLNKQTVTLADVKTLVLDEADRML 159

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
             G    +   ++Q +T    LL +AT  P  +   S       KI + P        V 
Sbjct: 160 DMGFFDDISDIISQMSTQRQTLLFSAT-WPDEIAKIS------RKIQQDP--------VT 204

Query: 463 IPINRIDEV---------IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           I IN  DE+         I R   +    K      P       +  R   + + +L E 
Sbjct: 205 IEINSPDELPAVEQQFYEISRYGKLGLLQKLLSHHQPNSCVVFCNTKRDCQDVYEALTES 264

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             S +A+ HG M   +++  +  F NG+C++L+AT V   G+D+    ++I     H   
Sbjct: 265 NQSVLAL-HGDMEQKERDQTLIRFANGSCRVLVATDVAARGLDIKALEMVINYELSHDPE 323

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
             +H++ GR  R  E    I    P
Sbjct: 324 VHIHRI-GRTARAGESGLAISFCAP 347


>gi|118092587|ref|XP_001232052.1| PREDICTED: similar to Gu protein [Gallus gallus]
          Length = 713

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 135/338 (39%), Gaps = 59/338 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++A  Q          +++AP   LA Q  +  K  T+ 
Sbjct: 174 IAQARTGTGKTFSFAIPLIEKLQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITR- 232

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +   ++ I  G   I++GT    +D +Q  KL L     V++DE
Sbjct: 233 -KLTVACFYGGTPYNGQ---IDLIRSG-IDILVGTPGRIKDHLQNGKLDLTKVKHVVLDE 287

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTAT------PIPRTLVLTSLGDIDIS 446
             +         V+  L++  K  +   P  LL +AT       + +  + +    +D+ 
Sbjct: 288 VDQMLDMGFAEQVEDILRVAYKKDSEDNPQTLLFSATCPNWVYDVAKKYMKSKYEQVDL- 346

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-- 504
                  GRK  K            +E L +     ++A  I   I+    S  R++V  
Sbjct: 347 ------IGRKTQKAAT--------TVEHLAIECHWSQRAAVIGDVIQVYSGSYGRTIVFC 392

Query: 505 ---ERFN--SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              +  N  +L+         +HG +    +E  +  F+NG  K+L+AT V   G+D+ +
Sbjct: 393 ETKKDANELALNASIKQDCQSLHGDIPQKQREITLKGFRNGAFKVLVATNVAARGLDIPE 452

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             +++  +      + +H+  GR GR      CI  Y 
Sbjct: 453 VDLVVQSSPPKDVESYIHR-SGRTGRAGRTGICICFYQ 489


>gi|307595773|ref|YP_003902090.1| DEAD/DEAH box helicase domain-containing protein [Vulcanisaeta
           distributa DSM 14429]
 gi|307550974|gb|ADN51039.1| DEAD/DEAH box helicase domain protein [Vulcanisaeta distributa DSM
           14429]
          Length = 760

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 146/357 (40%), Gaps = 47/357 (13%)

Query: 297 ILQGDVGSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           ++    G GKT   L+ LI M      G +A+IM P   LA+     +++Y     + V 
Sbjct: 86  VIMAGTGVGKTEAFLLPLITMIG--REGIKAMIMYPTKALARDQLLRMQRYFTAINVSVM 143

Query: 354 IITGNMPQAHRRKAL-----------ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
              G+ P   R K             + ++    H+       F+D ++ Y +  V++D+
Sbjct: 144 PYDGDTPSDIRSKIYSSPPDILITNPDMVSEALTHV-----GKFRDLLRNYGV--VVLDD 196

Query: 403 QHRFG------VQQRLKLTQKATAPHVLLMTATPI--PRTLVLTSLGDIDISKITEKPAG 454
            H +       V   LK  ++    +  +++   +  P       LG +D  ++   P G
Sbjct: 197 FHVYNGVFGAHVHYVLKRMRRFMRNYQFVVSTATVGNPVDFARELLG-VDDVRLIRGPEG 255

Query: 455 RKPI--KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           R+ +    ++ PI+R  + E  E  +V +  G K               F  +++RF   
Sbjct: 256 RRGLVRHVLVSPISRGRLAEAAELARVCVRRGMKCLVFA------DSHRFVELIKRFVD- 308

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
              F   + +    ++  ++  V D F+ G   +L+ T  +E+GIDV DA + ++     
Sbjct: 309 KAGFGDRVRVHRAGLTIEERHEVEDGFREGRYLVLLTTPTLEMGIDVGDADVAVMATIPP 368

Query: 571 FGLAQLHQLRGRVG-RGEEISSCILLYHPPLSK--NSYTRLSVLKNTEDGFLIAEED 624
              ++  Q  GRVG RG+      +L   P+S   +S  R   ++  ED ++    D
Sbjct: 369 -SYSKYLQRSGRVGRRGQRAYVIQVLGDDPMSTYYSSNPREFYMRKPEDLYVEWRND 424


>gi|225011120|ref|ZP_03701583.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-3C]
 gi|225004754|gb|EEG42713.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-3C]
          Length = 455

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 130/316 (41%), Gaps = 32/316 (10%)

Query: 302 VGSGKTLVALIA----MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            G+GKTL  L+     +  A E   +A+++ P   L  Q  E  +K  QNT I V  + G
Sbjct: 53  TGTGKTLAYLLPILNDLKFAKEKTVRALVIVPTRELVSQVVEEAEKICQNTFIRVCGVHG 112

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDE-------QHR 405
                  R AL +     A II+ T     D      I+Y  +  V++DE         R
Sbjct: 113 GNSMKKDRDALAQ----SADIIVATPGRLYDLFLARVIKYAAIKKVVIDEVDVMLDLGFR 168

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR--KPIKTVII 463
           F +     L  K    H++  +AT       L S   I   +I    +G   K I     
Sbjct: 169 FQLTNIFDLLPKKRQ-HIMF-SATMTDEIESLISDFFIAPKRIYIAMSGTPLKNIAQTAY 226

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER-FNSLHEHFTSSIAIIH 522
            +      +  L+ +L + +    +   +  KK      + +R +  L   F  +I I+H
Sbjct: 227 AVPNYYTKVNLLQHLLEQEETFKKVLVFVSNKK------IADRIYEQLEPVFEKNIGIVH 280

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
              +   +  V+ +F  G  +++IAT ++  G+D+   S +I  +   +    +H++ GR
Sbjct: 281 ANKTQNHRNRVLSAFDAGRIRIVIATDLVARGLDIDQISHVINFDTPKYPENYMHRI-GR 339

Query: 583 VGRGEEISSCILLYHP 598
            GR     + ILL++P
Sbjct: 340 TGRANADGNSILLHNP 355


>gi|241952789|ref|XP_002419116.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223642456|emb|CAX42702.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 523

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 10/103 (9%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA--EHFGLA 574
           +++I+HG + + D++ ++D F+ G  K+LI T V+  GID+   S+++  +   + +G  
Sbjct: 397 TVSILHGGLDNEDRDRLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDMPIDKYGKP 456

Query: 575 Q----LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
                LH++ GR GR   +   I   H    K SY  L  +KN
Sbjct: 457 DPSTYLHRI-GRTGRFGRVGVSISFIH---DKRSYDILMAIKN 495


>gi|70943453|ref|XP_741771.1| ATP-dependent RNA helicase [Plasmodium chabaudi chabaudi]
 gi|56520361|emb|CAH82196.1| ATP-dependent RNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 557

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 120/289 (41%), Gaps = 30/289 (10%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   L  Q    IKK+     +    + G +P+  +   +  I  G A II+ T 
Sbjct: 245 GLILLPTRELCMQVLNEIKKFENELDLKAVAVYGGVPKYFQ---INNIKKG-ADIIVATP 300

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTAT-PIP 432
               D      I   + I V++DE  R    G +++L+  +TQ      +L +TAT P  
Sbjct: 301 GRLLDYLENGIINLLRCIYVVIDEADRLLDMGFEKQLRKIMTQINKNKQLLFLTATWPEQ 360

Query: 433 RTLVLTSLGDIDISKI----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYW 487
              +       D  KI    +E  A +   + VI+  +   +      +  + E  K   
Sbjct: 361 VRKLAYDFCSFDPVKIQIGKSELTANKNIEQQVIVSSSIDLKKKLLDWLKDNYENNKILI 420

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C           R+       L  H  +S++I HG     +++ +++++KN  C +L+A
Sbjct: 421 FCDTK--------RNCDNLCKELRYHQYNSLSI-HGDKQQRERDRILNNYKNDRCNILVA 471

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           T V   G+D+ + SI+I  +  +     +H++ GR GR       IL +
Sbjct: 472 TDVASRGLDIKNISIVINYDIPNTIEDYIHRI-GRTGRAGNKGKSILFF 519


>gi|299533009|ref|ZP_07046396.1| hypothetical protein CTS44_19497 [Comamonas testosteroni S44]
 gi|298719233|gb|EFI60203.1| hypothetical protein CTS44_19497 [Comamonas testosteroni S44]
          Length = 469

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 131/309 (42%), Gaps = 34/309 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I Q   GSGKT    + M   +       QA+++ P   LA Q    I++  +    I V
Sbjct: 55  IAQASTGSGKTAAFGLPMVDRLNPRWFAVQALVLCPTRELADQVATEIRRLARAQDNIKV 114

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G +P  ++  +LE      AHI++GT     D ++  KL +     +++DE  R  
Sbjct: 115 VTVYGGVPSRNQIASLEN----GAHIVVGTPGRVMDLMERGKLDIGNLKTLVLDEADRML 170

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS--LGDIDISKI-TEKPAGRKPIK 459
              F       + Q       LL +AT       L S  + D    K+ T+  AG+   +
Sbjct: 171 DMGFLGDIETVVRQCPADRQTLLFSATYPDGIASLASRFMRDPQTVKVATQHSAGKIAQR 230

Query: 460 TVIIPI-NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
              +   +++D V + L     E   A+    Q         R VV   + L     S++
Sbjct: 231 WYEVGARDKVDTVAKLLAHFRPESSIAFCNTKQ-------QCRDVV---SELQAQGFSAL 280

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+  G +   +++ V+  F N +C +L+AT V   G+D+ D S +I  +        +H+
Sbjct: 281 ALF-GELEQRERDEVLVQFANKSCSVLVATDVAARGLDIADLSAVINVDVTPDPEVHIHR 339

Query: 579 LRGRVGRGE 587
           + GR GRG+
Sbjct: 340 I-GRTGRGD 347


>gi|259500990|ref|ZP_05743892.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners DSM 13335]
 gi|302190561|ref|ZP_07266815.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus iners AB-1]
 gi|309803755|ref|ZP_07697841.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 11V1-d]
 gi|309804668|ref|ZP_07698733.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 09V1-c]
 gi|309806978|ref|ZP_07700960.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 03V1-b]
 gi|309808565|ref|ZP_07702461.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 01V1-a]
 gi|309809614|ref|ZP_07703471.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           2503V10-D]
 gi|312871555|ref|ZP_07731648.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           3008A-a]
 gi|312872588|ref|ZP_07732656.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2062A-h1]
 gi|312874281|ref|ZP_07734313.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2052A-d]
 gi|312874733|ref|ZP_07734752.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2053A-b]
 gi|315653950|ref|ZP_07906866.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
 gi|325912398|ref|ZP_08174793.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           143-D]
 gi|325913097|ref|ZP_08175467.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           60-B]
 gi|329920540|ref|ZP_08277272.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           1401G]
 gi|259167684|gb|EEW52179.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners DSM 13335]
 gi|308164164|gb|EFO66425.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 11V1-d]
 gi|308166060|gb|EFO68278.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 09V1-c]
 gi|308166598|gb|EFO68795.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 03V1-b]
 gi|308168193|gb|EFO70315.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 01V1-a]
 gi|308170095|gb|EFO72131.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           2503V10-D]
 gi|311089478|gb|EFQ47903.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2053A-b]
 gi|311090154|gb|EFQ48566.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2052A-d]
 gi|311091950|gb|EFQ50326.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092950|gb|EFQ51301.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           3008A-a]
 gi|315488646|gb|EFU78292.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
 gi|325475740|gb|EGC78911.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           143-D]
 gi|325477518|gb|EGC80660.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           60-B]
 gi|328936216|gb|EGG32669.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           1401G]
          Length = 487

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 171/422 (40%), Gaps = 67/422 (15%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + ++      + G QA+I+ P   LA Q  E + +  ++    V+
Sbjct: 42  IGQAQTGTGKTAAFGLPILQTLDKKQEGIQALIIEPTRELAIQTQEELFRLGRDENAHVQ 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
           ++ G      + ++L+++ +    I++GT     D     +I    L  VI+DE      
Sbjct: 102 VVYGGADIRRQIRSLKQVPN----ILVGTPGRLLDHLKRRTINLSHLKHVILDEADEMLD 157

Query: 407 -GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  Q ++  LT  +     LL +AT +P+ ++      +   +I +       IK+  +
Sbjct: 158 MGFIQDIESILTFASNDHQTLLFSAT-MPKPILQIGEKFMHDPQIVQ-------IKSKEL 209

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---NFRSVVERFNSLHEHFTS---S 517
             N ID+   RLK    E +K   +C  I+ +       F     R + L   F +    
Sbjct: 210 TANLIDQYFVRLK----ENEKFDILCRLIDVQDPELSVVFGRTKRRVDELTRGFQARGYD 265

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            A IHG ++   + SV+  FK G   +L+AT V   G+D+   S +   +      + +H
Sbjct: 266 AAGIHGDLTQTKRMSVLKRFKQGKLDILVATDVAARGLDISGVSHVYNYDIPQDPDSYVH 325

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           ++ GR GR  +    I    P                E G++   E L ++K        
Sbjct: 326 RI-GRTGRAGKNGMSITFVTP---------------NEIGYMKTIERLTRKKM------- 362

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
               P    +  E  D  L IA K  + +L  D DLT    ++ ++L    + N A   +
Sbjct: 363 ---TPLRPPSDKEAFDGQLSIANKKIQELL--DSDLTKYTKEAEKLL----ENNSALDLV 413

Query: 698 RA 699
            A
Sbjct: 414 AA 415


>gi|227486921|ref|ZP_03917237.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227092995|gb|EEI28307.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 455

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 121/287 (42%), Gaps = 27/287 (9%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   L  Q  E + +   N  + V  I G  P   + KAL+        +++GT
Sbjct: 84  RALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTPYEEQEKALKD----GTDLVVGT 139

Query: 383 HALFQDSIQYYKL------ILVI--VDEQHRFGVQQRL-KLTQKATAPHVLLMTATPIPR 433
                D     +L      ILV+   DE    G    + K+    TA H  ++ +  +P 
Sbjct: 140 PGRLIDLYNRGELRLGTVRILVLDEADEMLDLGFLPAIEKIIAGITAEHQTMLFSATMPD 199

Query: 434 TLVLTSLGDIDI-----SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            ++  + G ++      ++++ +       K V+   +R+D+V    +V+ + G+    I
Sbjct: 200 AILGLARGFMNKPVHIRAEMSGEAETNATTKQVVFKSHRMDKVAVISRVLQARGRGRTII 259

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +       RS  E    L       +A +HG MS   +E  +  F++G   +L+AT
Sbjct: 260 FVRTK-------RSAAEVARDL-AGAGFQVASVHGDMSQSARERSLQGFRDGVVDILVAT 311

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   GID+ D + +I        L  +H++ GR GR     + + L
Sbjct: 312 DVAARGIDIDDVTHVINYQTPDDELTYVHRI-GRTGRAGHTGTAVTL 357


>gi|194750993|ref|XP_001957811.1| GF23832 [Drosophila ananassae]
 gi|190625093|gb|EDV40617.1| GF23832 [Drosophila ananassae]
          Length = 1128

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 154/357 (43%), Gaps = 59/357 (16%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-AMAAAVE 319
           + + + RN   +PT+ Q +AI  +L +M        ++Q   G+GKTL+ ++ AM +   
Sbjct: 36  VMRGLQRNKFMTPTRIQAAAIPLVLDEMD------LLIQSKSGTGKTLIYVLGAMNSYFP 89

Query: 320 A--GGQAVIMAP---IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           A     A+I+ P   + I  +  + ++  Y Q  +    I   ++ +  +R +       
Sbjct: 90  AMRWPHALIVVPTRELAIQVEDTFFYLSYYMQGFRAHAFIGGTDVTKDRKRMS------- 142

Query: 375 QAHIIIGT-----HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           ++ +IIGT     H          K+ L+++DE  +  V + L+ T         L+   
Sbjct: 143 ESRVIIGTPGRLLHLYHNRVFDVTKIRLLVLDEADQLFVTKGLQDTVTE------LINVL 196

Query: 430 PIPRTLVLTSLG-----DIDISKITEKP-------------AGRKPIKTVIIPINRIDEV 471
           P  R ++  S       D  ++K+  KP               R+ +  V   IN I E+
Sbjct: 197 PERRQVIACSATYENNLDERLAKMMRKPVLISNSERATVLLGIRQFVYDVPQQINSIQEM 256

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
             +L+ VL        I  Q+  ++   F S   R +S   +   S    +++ G M   
Sbjct: 257 RCKLEAVLK-------IFAQLPYEQVILFASTQMRADSYRNYLMKSGIQCSLLTGAMDQA 309

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           D+  V +S+++   + L+AT V+  G+D   A+++I  +     +  LH++ GR GR
Sbjct: 310 DRLDVFESYRSFNMRTLVATDVMARGVDSKHANLVINLDPPKDHVTYLHRI-GRAGR 365


>gi|34540998|ref|NP_905477.1| helicase [Porphyromonas gingivalis W83]
 gi|34397313|gb|AAQ66376.1| helicase, putative [Porphyromonas gingivalis W83]
          Length = 471

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 3/104 (2%)

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN-RMLRILQGDVGSGKTLVALIAMA 315
           ++  +A++IL+N+PF+PT+SQ+SAI+ + + +  +    + +L+G  G+GKT +    + 
Sbjct: 1   MDNYLAEQILKNLPFTPTQSQDSAIRSLAKYLFDREPYSVFLLRGYAGTGKTQLIASVVQ 60

Query: 316 AAVEAGGQAVIMAPIGILAQ--QHYEFIKKYTQNTQIIVEIITG 357
             +E G    ++AP G  A+    Y   + YT + QI      G
Sbjct: 61  TILEQGADCELLAPTGRAAKVLTTYTRHQAYTIHRQIYQATAAG 104


>gi|308487516|ref|XP_003105953.1| CRE-INF-1 protein [Caenorhabditis remanei]
 gi|308254527|gb|EFO98479.1| CRE-INF-1 protein [Caenorhabditis remanei]
          Length = 402

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 143/328 (43%), Gaps = 75/328 (22%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQI-IV 352
           I Q   G+GKT    +++   ++      QA++MAP   LAQQ  + +    +   + I+
Sbjct: 70  IAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNIL 129

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQH 404
             I G   +  +RK    I     H+++GT     D I    L        +L   DE  
Sbjct: 130 PCIGGTSVRDDQRKLENGI-----HVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEML 184

Query: 405 RFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
             G + ++    ++      V+L++AT +P  ++           +T++   R PI+ ++
Sbjct: 185 SRGFKDQIYDVFRSMPQDVQVVLLSAT-MPSEVL----------DVTDRFM-RNPIRILV 232

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN-------------- 508
               + DE+         EG + ++I  Q   K E  F  + + +N              
Sbjct: 233 ----KKDELT-------LEGIRQFYINVQ---KDEWKFDCLCDLYNVVNVTQAVIFCNTR 278

Query: 509 ----SLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
                L E  T+   +++ +HG M   +++++M  F++G+ ++LI T ++  GIDV   S
Sbjct: 279 RKVDQLTEQMTNKQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVS 338

Query: 562 IIII----ENAEHFGLAQLHQLRGRVGR 585
           ++I      N E++    +H++ GR GR
Sbjct: 339 LVINYDLPSNRENY----IHRI-GRSGR 361


>gi|295982024|emb|CAB03153.4| C. elegans protein F58G11.2, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 959

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 136/331 (41%), Gaps = 77/331 (23%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q +E ++ Y QNT IIV +  G   Q+ R ++L  I +G   I+IGT 
Sbjct: 461 ALILAPTRELAAQIHEALRTYCQNTDIIVLLSYG---QSDRARSLNEIRNG-CDILIGTC 516

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH-------VLLMTATPI 431
               D      I    L  ++ DE  R      L+  +K    H          M +   
Sbjct: 517 GRIMDFTVKSHISLLHLRFLVFDEADRL-----LQDMKKDPLGHLGAIIKDAGFMESAAT 571

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA------ 485
            +T++ ++  +  +  +  +   R P +         DE+I   K+VL+ G+ +      
Sbjct: 572 RQTIMTSATFNASVMTVANELMKRLPGQ---------DEMI---KIVLANGRLSKRVNLE 619

Query: 486 YWICPQIEEKKESNFRSVV------------------ERFNSLHEHFTSS---IAIIHGR 524
           ++ C  + EK  +  R ++                  ++ ++     TS       +HG 
Sbjct: 620 FFECKGLAEKN-AKLREILKQNVNGKTLKTIIFVQKKDQCDACAAKLTSGGMLAQTLHGD 678

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII---------IENAEHFGLAQ 575
            S   +E +++ FK+    LL+ T ++  GIDV D   +I          + A+ F    
Sbjct: 679 RSQDMREKLINDFKSNRVNLLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQGADTF---- 734

Query: 576 LHQL--RGRVGRGEEISSCILLYHPPLSKNS 604
           +H+    GR GR +E   C+    P   ++S
Sbjct: 735 IHRAGRTGRTGR-KENGLCVSFVDPQSDRDS 764


>gi|295675110|ref|YP_003603634.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295434953|gb|ADG14123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 467

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 139/309 (44%), Gaps = 32/309 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + I++  +  + I V
Sbjct: 50  IAQAKTGSGKTAAFSLALLARLDARKFDTQAMVLCPTRELADQVTQEIRRLARAEENIKV 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G  P   +  +LE   HG AH+++GT     D ++   L+L     +++DE  R  
Sbjct: 110 LTLCGGTPMRPQTASLE---HG-AHVVVGTPGRIMDHLERGTLVLQALNTLVLDEADRML 165

Query: 406 -FGVQQRL-KLTQKATAPHVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIKT 460
             G    + K+ ++       L+ +   P  +   S   L +    K+ E+    K I+ 
Sbjct: 166 DMGFFDDIAKVARQCPKERQTLLFSATYPEGIAKLSQQFLRNPKEVKLAERHDDSK-IRQ 224

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
               +   DE +  + ++L+  +    I     +++  +   V+ R    H     ++A+
Sbjct: 225 RFYEVTE-DERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLLDVL-RAQGFH-----ALAL 277

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  N +     ++H  R
Sbjct: 278 -HGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVI--NVDVTPDPEVHTHR 334

Query: 581 -GRVGRGEE 588
            GR GR ++
Sbjct: 335 IGRTGRADQ 343


>gi|260429679|ref|ZP_05783655.1| dead-box ATP-dependent rna helicase 53 [Citreicella sp. SE45]
 gi|260419162|gb|EEX12416.1| dead-box ATP-dependent rna helicase 53 [Citreicella sp. SE45]
          Length = 772

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 129/301 (42%), Gaps = 29/301 (9%)

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
           T  +V    G M     R+ALER     AHI++GT    +D I+   L L     V++DE
Sbjct: 95  TGAVVASCVGGMDVRQERRALER----GAHIVVGTPGRLRDHIERESLDLSAIRAVVLDE 150

Query: 403 QHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
                  G ++ L+  L +       LL +AT  P  ++ T      ++K  ++ A R  
Sbjct: 151 ADEMLDLGFREDLEFMLGEAPEDRRTLLFSATVPP--MIAT------LAKSYQRDARR-- 200

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSLHEH 513
           + TV       D   + ++V  S+ + A +   +  + + +    N R+ V R  +   +
Sbjct: 201 VNTVDSASQHADISYQAIRVAQSDVEHAIFNLLRFHDDESAIVFANTRAAVSRLTARLAN 260

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +   + G +S  ++   + + ++G  ++ +AT V   GID+ + +++I  +      
Sbjct: 261 RGLATVSLSGELSQTERSHALQAMRDGRARVCVATDVAARGIDLPNLNLVIHADLPTNTE 320

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
             LH+  GR GR        L+    ++K +   L   K + +  +    D  QRK+ E 
Sbjct: 321 TLLHRS-GRTGRAGRKGISALIVPSKVAKKAERLLKWAKISAEWTVAPSVDDIQRKDEER 379

Query: 634 L 634
           L
Sbjct: 380 L 380


>gi|196016401|ref|XP_002118053.1| hypothetical protein TRIADDRAFT_33552 [Trichoplax adhaerens]
 gi|190579356|gb|EDV19453.1| hypothetical protein TRIADDRAFT_33552 [Trichoplax adhaerens]
          Length = 524

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 95/418 (22%), Positives = 165/418 (39%), Gaps = 100/418 (23%)

Query: 246 QFKKEIGIPINVEGKIAQK-------------ILRNIPFS----PTKSQESAIKDILQDM 288
            F K   IP+   G    K             IL NI       PT  Q+ AI  I    
Sbjct: 85  NFSKYQDIPVEATGSNCPKHIEEFNQCDLGEIILGNIELCQYNIPTPVQKYAISII---- 140

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-----------------AVIMAPIG 331
           + K  ++   Q   GSGKT   LI + + +  GG                  A+I+AP  
Sbjct: 141 TGKRDLMACAQ--TGSGKTAAFLIPILSLIFNGGPVVKPQSYYGSRRKQFPLALILAPTR 198

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
            LA Q YE  KK+T        ++ G     ++ K L+R      H+++ T     D ++
Sbjct: 199 ELAAQIYEEAKKFTYRAVARPCVVYGGADFGYQVKDLDR----GCHLLVATPGRLVDMLE 254

Query: 392 YYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVL 437
              + L     +++DE  R     F  Q R  + Q    P      ++ +AT  P+ + +
Sbjct: 255 RGMIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPSGQRQTMMFSAT-FPKEIQV 313

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRI----DEVIERLKVVLSEGKKAYWICPQIE 493
            +   +D                + + + R+    + +I+++  V  + K+AY +  ++ 
Sbjct: 314 LARDFLD--------------DYIFLAVGRVGSTSENIIQKMVWVEEDDKRAYLL--ELL 357

Query: 494 EKKESNFRSVV-----ERFNSLHEHFTS----SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              E    S+V     +  +SL E        S AI HG  S  D+E  + +F+ G   +
Sbjct: 358 NSTEPTSLSLVFVETKKGADSLQEFLVRMGYYSTAI-HGDRSQRDREDALRAFRAGVRPI 416

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVGRGEEISSCILLYH 597
           L+AT V   G+D+ + + +I     +F L       +H++ GR GR   + +    ++
Sbjct: 417 LVATAVAARGLDIPNVAHVI-----NFDLPSDIEEYVHRI-GRTGRVGNVGTATSFFN 468


>gi|154301827|ref|XP_001551325.1| hypothetical protein BC1G_10065 [Botryotinia fuckeliana B05.10]
 gi|160380621|sp|A6SBT4|DBP5_BOTFB RecName: Full=ATP-dependent RNA helicase dbp5
 gi|150855727|gb|EDN30919.1| hypothetical protein BC1G_10065 [Botryotinia fuckeliana B05.10]
          Length = 470

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 151/372 (40%), Gaps = 60/372 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----AGGQAVIMA 328
           P+K QE A+  +L++         I Q   G+GKT   +I + + ++       QA+ +A
Sbjct: 92  PSKIQEKALPLLLRNPPTN----MIAQSQSGTGKTAAFVITILSRLDFSKPTTPQALCLA 147

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q    I+        I + + G   QA    A+ER A   A +++GT     D
Sbjct: 148 PSRELARQIEGVIRS-------IGQFVDGLTVQAAIPGAVERNAKVNAMVVVGTPGTVMD 200

Query: 389 -----SIQYYKLILVIVDEQHRFGVQQRL-----KLTQKATAPHVLLMTATPIPRTLVLT 438
                SI   ++ ++ +DE      QQ L     ++        +LL +AT         
Sbjct: 201 LIKRRSIDASQMKILCLDEADNMLDQQGLGDQCMRVKSMIRVEQILLFSATFPDEVYGFA 260

Query: 439 SLGDIDIS------KITEKPAGRKPIKTVIIPI-NRID--EVIERLKVVLSEGKKAYWIC 489
                D S      K+         IK + +   N +   E++ +L  +++ G    ++ 
Sbjct: 261 Q----DFSPRANEIKLKRDELTVSGIKQMFMDCPNEVGKYEILVKLYGLMTIGSSIIFV- 315

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                K+     ++ ER      H    +A +HG     +++ V++ F+ G  K+LI T 
Sbjct: 316 -----KRRDTASNIAERLTK-EGH---KVAAVHGAFEGSERDQVLEDFRQGKAKVLITTN 366

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQ--------LHQLRGRVGRGEEISSCILLYHPPLS 601
           V+  GIDV   S++I  +    G +         LH++ GR GR   +   I        
Sbjct: 367 VLARGIDVQSVSMVINYDVPMKGRSDSDPPPETYLHRI-GRTGRFGRVGVSISFV---FD 422

Query: 602 KNSYTRLSVLKN 613
           + SY  L+ + N
Sbjct: 423 RKSYDALNQIAN 434


>gi|73748187|ref|YP_307426.1| primosomal protein N' [Dehalococcoides sp. CBDB1]
 gi|73659903|emb|CAI82510.1| primosomal protein N' [Dehalococcoides sp. CBDB1]
          Length = 815

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 111/255 (43%), Gaps = 35/255 (13%)

Query: 274 TKSQESAIKDILQDMS-----QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +  QE  ++ I + ++      +N    +L G  GSGKT + L A+A A+  G +A+++ 
Sbjct: 278 SPPQEKCLESINRSLNTPPEDDQNPRTFLLHGITGSGKTEIYLQALAEALRLGKKAIVLV 337

Query: 329 P-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALF 386
           P I +  Q    F  ++       V ++   +    +    +RI +GQA I+IG   ALF
Sbjct: 338 PEISLTPQTIARFAGRFPGR----VAVLHSRLSPGEQFDEWQRIKNGQADIVIGPRSALF 393

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID-- 444
                  K  ++I+DE+H +  +Q+    +  T    L MT       ++ ++  DID  
Sbjct: 394 AP---LDKPGIIIIDEEHEWTYKQQNPQPRYHTRTVALKMTEEYGAVLVLGSATPDIDSY 450

Query: 445 ------ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                 + ++ E P    P +   +P   + +    ++  LSEG ++ +           
Sbjct: 451 FKAQNGLYQLLELPERLTPYRGASLPKTELVD----MRTELSEGNRSIF---------SR 497

Query: 499 NFRSVVERFNSLHEH 513
           N  + +E+  + HE 
Sbjct: 498 NLHASIEKVLAKHEQ 512


>gi|313901321|ref|ZP_07834808.1| helicase C-terminal domain protein [Clostridium sp. HGF2]
 gi|312953929|gb|EFR35610.1| helicase C-terminal domain protein [Clostridium sp. HGF2]
          Length = 384

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 98/223 (43%), Gaps = 26/223 (11%)

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ---KATAPHVLLMTATPIPRT 434
           II   H L++    +    L+I+DE   F  +    L Q    A   + L +TATP    
Sbjct: 149 IICTMHQLYR---YHAAFDLLIMDEVDAFPYRGNAVLKQIAIHACIGNRLYLTATPDEEM 205

Query: 435 LVLTSLGDIDISKITEKPAGRK---PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           L     G + + ++ ++P G     P     +P  ++ ++I  LK    E  +     P 
Sbjct: 206 LSDVKQGKLQMVELFQRPHGYPLIVPDVKAALPSIQLYQLIRFLKRQKKEAAQTLVFVPT 265

Query: 492 IE-EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           I   ++ S +  +V R  S    FTS            DKE ++  F     + LIATTV
Sbjct: 266 IALAEQMSRWLRIVFRCTS----FTSKTK---------DKEKILKRFHEKRYECLIATTV 312

Query: 551 IEVGIDVVDASIIIIENAEH--FGLAQLHQLRGRVGRGEEISS 591
           +E GI +    ++I  +A+H  F  A L Q+ GRVGR  E+ +
Sbjct: 313 LERGITIKGVHVVIY-HADHPVFNEASLIQMIGRVGRNIEMPT 354


>gi|228924198|ref|ZP_04087469.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835416|gb|EEM80786.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 481

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 135/326 (41%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++AP   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLAPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID-ISKITEKPAGRKPIKTVI 462
             F  Q    + +  T    +L +AT +P         D++ +S+          IK   
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPE--------DVEKLSRTYMNSPTHIEIKAAG 211

Query: 463 IPINRID----EVIERLK------VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           I  ++I+    EVIE  K      V   E   +  I  + +E  +  +R + +R N   +
Sbjct: 212 ITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-KRANYPCD 270

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                   IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +     
Sbjct: 271 K-------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEK 323

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
            + +H+  GR GR       I    P
Sbjct: 324 ESYVHRT-GRTGRAGNSGKAITFITP 348


>gi|168009407|ref|XP_001757397.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691520|gb|EDQ77882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 482

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 159/378 (42%), Gaps = 70/378 (18%)

Query: 302 VGSGKTLV-ALIAMAAAVE---------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            GSGKTL   + AM   ++         A    +++AP   LAQQ  + +++      + 
Sbjct: 107 TGSGKTLAFGIPAMKHVLDKITKTKGKKAAPVCLVLAPTRELAQQIADVLEESGSACGVG 166

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF 406
           V  + G  P+  +R AL+      A +++ T    QD ++       ++  V++DE  R 
Sbjct: 167 VVCVYGGTPKGPQRSALK----AGARVVVATPGRLQDLMEEGVCSLDQVTYVVLDEADRM 222

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK-PIKTVIIP- 464
                L L  +  A   +L T   + +T++ ++   + +SK+  +    K P+K ++   
Sbjct: 223 -----LDLGFEP-AIRAILSTCCQVRQTVMFSATWPMAVSKLAMEFMNEKDPVKVMVGSQ 276

Query: 465 -------INRIDEVIE------RLKVVLSEGKKAYWICPQIEEKKESN-------FRSVV 504
                  + +I EVIE      RL+ +L           Q   K  +N       ++   
Sbjct: 277 DLAANHDVTQIVEVIEDRARDARLETLL-----------QKYHKSRTNRVLVFVLYKKEA 325

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            R  +  +     ++ +HG     D+   ++SFK+GT  LLIAT V   G+D+ D   +I
Sbjct: 326 VRVETALQRRGWKVSAVHGDKGQSDRTRAVNSFKDGTRPLLIATDVAARGLDIPDVEYVI 385

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT--EDGFLIAE 622
             +        +H++ GR GR  +      L H   ++    R   L N   E G  + E
Sbjct: 386 NYSFPLTTEDYVHRI-GRTGRAGKKG----LSHTFFTQADRARAGELVNVLREAGQTVPE 440

Query: 623 EDLK-----QRKEGEILG 635
           E LK     ++KE ++ G
Sbjct: 441 ELLKFGTHVKKKESKLYG 458


>gi|154492504|ref|ZP_02032130.1| hypothetical protein PARMER_02138 [Parabacteroides merdae ATCC
           43184]
 gi|154087729|gb|EDN86774.1| hypothetical protein PARMER_02138 [Parabacteroides merdae ATCC
           43184]
          Length = 1619

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 134/336 (39%), Gaps = 48/336 (14%)

Query: 302 VGSGKTLV-ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G GK++   L A+ +     G  V+++P+  L +   + + K   N  + V  I G + 
Sbjct: 288 TGGGKSITFQLPALMSGKRIKGLTVVISPLQSLMKDQVDNLWK---NEIMDVVTINGMLD 344

Query: 361 QAHRRKALERIAHGQAHII-IGTHALFQDSIQYY----KLILVIVDEQHRFGVQQ----- 410
              R  A++R+  G   I+ I   +    +I+      K++  ++DE H F         
Sbjct: 345 PVERAHAIQRVEEGSVSILYISPESFRSKTIERLLVGRKVVRFVIDEAHCFSAWGQDFRV 404

Query: 411 ---------RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK------PAGR 455
                    RL   QK     + +   T   +  V+  + D    K+  +       + R
Sbjct: 405 DYLYIGDFIRLLQEQKGGKQAIPVSCFTATAKQNVIQDIKDYFFEKLNIRFKTFCSGSTR 464

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           K +K  +  +   DE    L+ ++ +       CP I     S  R+  +    L +   
Sbjct: 465 KNLKYKVFKVENEDEKYGLLRSIIEDHD-----CPAI--VYVSRTRTAAKVATRLQQDGF 517

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF---- 571
           S+    HG+M    K S  + F +   ++++AT+   +G+D  +  +++     H+    
Sbjct: 518 SA-GTFHGKMETRMKTSSQNDFIDNKIRIMVATSAFGMGVDKKNVGLVV-----HYEISD 571

Query: 572 GLAQLHQLRGRVGRGEEI-SSCILLYH-PPLSKNSY 605
            L    Q  GR GR E I + C +L++   L K+ Y
Sbjct: 572 SLENYVQEAGRAGRDESIEADCYVLFNEEDLDKHFY 607


>gi|78485124|ref|YP_391049.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78363410|gb|ABB41375.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
          Length = 445

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 143/343 (41%), Gaps = 38/343 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVG--SGKTLVALIAMAAAVEAG---GQAVI 326
           +P+  Q  AI  +L+       ++   Q   G  +G TL  L  ++    AG    +A+I
Sbjct: 23  TPSPIQAQAIPAVLEGKD----VMAAAQTGTGKTAGFTLPILERLSKGKPAGPNQARALI 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHIIIGT 382
           + P   LA Q  + ++ Y +   +   ++ G +   PQ  R RK ++ +      ++   
Sbjct: 79  LTPTRELAAQVSDSVETYGKQLSLKSTVVFGGVKINPQMMRLRKGVDILVATPGRLL--- 135

Query: 383 HALF-QDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
             LF Q++I++ +L ++++DE  R    G    +K           ++ A P  R  +L 
Sbjct: 136 -DLFNQNAIKFDQLEILVLDEADRMLDMGFIHDIKR----------ILKALPKNRQNLLF 184

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    +  +   K     P++  + P N     + +    + +G+KA  +   I+E   S
Sbjct: 185 SATFSNEIRQLAKGLVNNPVEISVTPRNTTATTVTQWIYPVDKGRKAALLTKLIKENDWS 244

Query: 499 N---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F       N L +         A IHG  S   +   + SFK+GT + L+AT +  
Sbjct: 245 QVLIFSRTKHGANRLTKQLEGKGIKAAAIHGNKSQGARTKALASFKDGTVQALVATDIAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            GID+     ++  +  +     +H++ GR GR   +   + L
Sbjct: 305 RGIDIDQLPHVVNFDLPNVAEDYVHRI-GRTGRAGAVGEAVSL 346


>gi|143456452|sp|Q0DB53|RH52A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52A
 gi|51090883|dbj|BAD35456.1| putative DEAD-box protein 3 [Oryza sativa Japonica Group]
 gi|222635845|gb|EEE65977.1| hypothetical protein OsJ_21891 [Oryza sativa Japonica Group]
          Length = 602

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 145/347 (41%), Gaps = 73/347 (21%)

Query: 302 VGSGKTLV-ALIAMAAAVEAGG------------------QAVIMAPIGILAQQHYEFIK 342
            GSGKT    L  ++  V AGG                  +A+++AP   LA Q  E  K
Sbjct: 130 TGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAKPRALVLAPTRELAAQINEEAK 189

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL----- 397
           K++  T + V +  G  P  ++ + LER     A I++ T     D ++  K+ L     
Sbjct: 190 KFSFQTGLRVVVAYGGTPMYNQLRDLER----GADILVATPGRLVDMVERSKVSLEAIKY 245

Query: 398 VIVDEQHRF---GVQQRL-KLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKI 448
           +++DE  R    G + ++ K+ ++   P       +L +AT  P    L S    D    
Sbjct: 246 LVMDEADRMLDMGFEPQIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLAS----DFLS- 300

Query: 449 TEKPAGRKPIKTVIIPINRI----DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
                       + I + R+    D +++++++ LS+G+K  ++   ++ +      S +
Sbjct: 301 ----------NYIFITVGRVGSSTDLIMQKVEL-LSDGEKRGYLLDLLQRQSVGVANSKL 349

Query: 505 ER------------FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           ++             +SL     S       IHG  +  ++ES + SFK G   +++AT 
Sbjct: 350 QQPLTLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATD 409

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           V   G+DV + + +I  +        +H++ GR GR  +  S    +
Sbjct: 410 VASRGLDVPNVAHVINYDLPKSIEDYVHRI-GRTGRAGKAGSATAFF 455


>gi|322833585|ref|YP_004213612.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321168786|gb|ADW74485.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 460

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 153/351 (43%), Gaps = 56/351 (15%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           T  QE+++  IL  QD+  K +         GSGKT    I +  ++       QA+++ 
Sbjct: 28  TPIQEASLPAILLGQDVRAKAK--------TGSGKTAAFGIGLLNSITVSQFVAQALVLC 79

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNM--PQAHRRKALERIAHGQAHIIIGTH 383
           P   LA Q       + ++TQN +I+  +  G    PQ      LE + H   HI++GT 
Sbjct: 80  PTRELADQVSKELRRLARFTQNIKILT-LCGGQAIGPQ------LESLVH-PPHIVVGTP 131

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVL 437
              Q+     +++  +L ++++DE  R        L    +     +++ TP  R TL+ 
Sbjct: 132 GRIQEHLRKGTLKLDELKVLVLDEADRM-------LDMGFSEDIEDVVSYTPQDRQTLLF 184

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA---------YWI 488
           ++     I +I+ K   R+P+K   + I   D++ +  ++ +   K           Y  
Sbjct: 185 SATYPDGIERISSK-FQRQPLK---VEIEGEDDIADIRQIFIEADKHQRLSLLAAVLYQY 240

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            P       +  R   +  + L     S++A+ +G +   D++ V+  F NG+C++L+AT
Sbjct: 241 QPTSCVVFCNTKRDCQDVCDDLKAKGISALAL-NGDLEQRDRDRVLVRFSNGSCRVLVAT 299

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
            V   G+D+    ++I  N E     ++H  R GR GR       + L  P
Sbjct: 300 DVAARGLDIKQLGLVI--NYELSFDPEVHVHRVGRTGRAGTSGLAVSLVTP 348


>gi|284929135|ref|YP_003421657.1| primosomal protein N' [cyanobacterium UCYN-A]
 gi|284809594|gb|ADB95299.1| primosomal protein N' [cyanobacterium UCYN-A]
          Length = 839

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 91/183 (49%), Gaps = 12/183 (6%)

Query: 232 ELLA-GQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPT-KSQESAIKDILQDM 288
           ELLA  Q++  +++  + KK + I    + ++ ++ L  I    T  S ++   +I+  +
Sbjct: 255 ELLATSQVSFSVVQALENKKHLYIEYREKLRLPKQTLEKIGLKKTLTSDQAKALNIINSL 314

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQN 347
            Q   +L  L G  GSGKT V + A++  +  G  A+++ P IG+ +Q     + ++ + 
Sbjct: 315 EQYAEVL--LHGVTGSGKTEVYIQAISTLLNKGKSALVLVPEIGLTSQ----LMDRFQER 368

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
            + +V +   N+    R     ++  G+  I+IGT +     +  + L L+++DE+H   
Sbjct: 369 FEDLVFVYHSNLSDGERYDTWRQMLDGKPKIVIGTRSAVFSPL--FNLGLIVLDEEHDSS 426

Query: 408 VQQ 410
            +Q
Sbjct: 427 FKQ 429


>gi|270294044|ref|ZP_06200246.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275511|gb|EFA21371.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 445

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 130/365 (35%), Gaps = 73/365 (20%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           IL N+        + A K+  Q          +L    GSGKTL  L+ +   ++A    
Sbjct: 6   ILHNLKIQELTPMQEAAKEAYQSAQD-----LVLLSPTGSGKTLAFLLPLVQTLKADIQS 60

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q     K  +  T        G  P     + ++ I      +IIG
Sbjct: 61  VQALVLVPSRELALQIETVFK--SMGTPFKAMSCYGGRPAMEEHRTMKGI---HPAVIIG 115

Query: 382 THALFQDSIQ-----YYKLILVIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPI 431
           T     D ++        ++ +++DE  +   FG    +   + Q  +    +L++AT  
Sbjct: 116 TPGRMSDHLRKENFNAATVVTLVIDEFDKCLEFGFHDEMAEVIGQLPSLKKRVLLSATDA 175

Query: 432 PRTLVLTSLGDIDISKIT----------EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                   +G    S  +          E  A R  +  V+ P     E +  L   L  
Sbjct: 176 EEIPQFAGVGGDSPSSGSRLMKLDFLAPEALAPRLRLHKVVSPEKDKLETLYNLLCTLGY 235

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                +           N+R  VER     +       + HG M   D+E  +  F+NG+
Sbjct: 236 HSTLVFC----------NYRESVERVAGYLQARKFPCDMFHGGMEQPDRERALYKFRNGS 285

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           C +LI+T +   G+D+       IEN  H                         YHPP++
Sbjct: 286 CAVLISTDLAARGLDIPG-----IENVVH-------------------------YHPPVN 315

Query: 602 KNSYT 606
           + +YT
Sbjct: 316 EEAYT 320


>gi|86747396|ref|YP_483892.1| primosome assembly protein PriA [Rhodopseudomonas palustris HaA2]
 gi|86570424|gb|ABD04981.1| replication restart DNA helicase PriA [Rhodopseudomonas palustris
           HaA2]
          Length = 735

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 86/202 (42%), Gaps = 29/202 (14%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV------EGKIAQKILRNIPFSPTK 275
           +PAR RL   E+L+    LL  +    KE G    V      EG ++ + +   P +PT 
Sbjct: 137 TPARRRLI--EILSD--GLLHGKSDAAKEAGCSAGVIDGLVDEGTLSVEPMPREPAAPTP 192

Query: 276 SQESAIKDILQDMSQKNRMLR------------ILQGDVGSGKTLVALIAMAAAVEAGGQ 323
             + A  D   + +     +R            +L G  GSGKT V   A+A  +  G Q
Sbjct: 193 DPDFAPADFSPEQAAAAETMRELVKSGGGFQAALLDGVTGSGKTEVYFEAVAEIIRQGRQ 252

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   L  Q   F+ ++     +        +    R +    IA G+A +++G  
Sbjct: 253 TLILMPEIALTGQ---FLDRFALRFGVRPLEWHSELTPRTRARNWAAIAAGEAQVVVGAR 309

Query: 384 -ALFQDSIQYYKLILVIVDEQH 404
            ALF   + Y  L L+IVDE+H
Sbjct: 310 SALF---LPYADLGLIIVDEEH 328


>gi|71982860|ref|NP_492161.3| Dicer Related Helicase family member (drh-3) [Caenorhabditis
           elegans]
 gi|38422755|emb|CAB02082.3| C. elegans protein D2005.5, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1119

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 9/97 (9%)

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +++  +D F NG  K+++AT+V+E G+DV   ++II  N       QL Q RGR  R + 
Sbjct: 815 EQQLTLDKFNNGRLKVIVATSVVEEGLDVTACNLIIKYNCSSGSAIQLVQQRGR-ARAKN 873

Query: 589 ISSCILLYHPPLSKNS--------YTRLSVLKNTEDG 617
             S +L     +++          Y RL V K TE+G
Sbjct: 874 SRSVLLSVKSSINETETNALISEKYMRLCVKKITENG 910


>gi|222640112|gb|EEE68244.1| hypothetical protein OsJ_26445 [Oryza sativa Japonica Group]
          Length = 2897

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 120/285 (42%), Gaps = 37/285 (12%)

Query: 303 GSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           GSGKTL  LI     +         G   +++AP   LA Q  +   K+ +++++    +
Sbjct: 650 GSGKTLGYLIPAFIHLRRYQNNPMLGPTVLVLAPTRELASQIQDEAVKFGRSSRVSCTCL 709

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR----- 405
            G   +  + + LER     A I++ T     D ++  K+ L     +++DE  R     
Sbjct: 710 YGGTSKGLQLRELER----GADIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMG 765

Query: 406 FGVQQRLKLTQKATAPHVLLMTAT-PIPRTLVLTSL----GDIDISKITEKPAGRKPIKT 460
           F  Q R  + +       L+ TAT P   T +   L      ++I  I E  A +   + 
Sbjct: 766 FEPQIRKIVDEIPRNRQTLMYTATWPKEVTKIAGDLLKDPVQVNIGSIDELVANKSITQY 825

Query: 461 V-IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           V ++P       +E++      G K    C   ++  +   R +   F +         A
Sbjct: 826 VEVVPPLDKQRRLEQILRAQERGSKVIIFC-STKKMCDQLARDIGRSFGA---------A 875

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            IHG  S  ++++V++ F+ G   +L+AT V   G+D+ D  ++I
Sbjct: 876 SIHGDKSQAERDNVLNQFRTGRAPILVATDVAARGLDIKDIRVVI 920


>gi|160420299|ref|NP_666087.3| probable ATP-dependent RNA helicase DDX46 [Mus musculus]
          Length = 1031

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 707

Query: 581 GRVGR 585
           GR GR
Sbjct: 708 GRTGR 712


>gi|146297088|ref|YP_001180859.1| primosomal protein N' [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145410664|gb|ABP67668.1| replication restart DNA helicase PriA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 723

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 21/179 (11%)

Query: 267 RNIPFSP----TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           R  P  P    TK Q+ A++ I     +      +L G  GSGKT V + AM   +  G 
Sbjct: 182 RETPTEPQYKLTKDQKKALELITSTFDKGIYKNILLFGVTGSGKTEVYIQAMRYVISKGK 241

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             ++M P   L  Q  + +K+  ++  ++       M  + R++A  ++  G+A ++IG 
Sbjct: 242 SVILMVPEISLTPQMIQNVKRRIESEVVVYH---SKMNSSQRQRAWLKLKSGEAKVVIGP 298

Query: 383 H-ALFQDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP 430
             A+F  + +   L L+IVDE+H          R    +  ++  K  +  ++L +ATP
Sbjct: 299 RSAIFAPAKE---LGLIIVDEEHETSYKSEKSPRVNAVEVAQMRAKINSIPIVLGSATP 354


>gi|68171771|ref|ZP_00545117.1| Type III restriction enzyme, res subunit:DEAD/DEAH box helicase,
           N-terminal [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998810|gb|EAM85516.1| Type III restriction enzyme, res subunit:DEAD/DEAH box helicase,
           N-terminal [Ehrlichia chaffeensis str. Sapulpa]
          Length = 377

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 10/146 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           +L G+ GSGKT V    +   +  ++  QA+I+ P  +L  Q  + IK Y  ++   VE 
Sbjct: 152 VLDGETGSGKTEVYCEVIRELIKRDSTAQALILLPEIVLTLQLIKRIKHYF-DSYYPVEW 210

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
              N+   +R++    IA+GQ+ I+IG   ALF   + Y  L ++IVDE+H    +Q   
Sbjct: 211 -HSNLTLKNRKEYWLSIAYGQSLIVIGARSALF---LPYKNLKMIIVDEEHDSSFKQECG 266

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTS 439
           +   A    ++L     IP  ++L+S
Sbjct: 267 VLYNARDMSIVLAKNLDIP--IILSS 290


>gi|319793441|ref|YP_004155081.1| ATP-dependent DNA helicase, recq family [Variovorax paradoxus EPS]
 gi|315595904|gb|ADU36970.1| ATP-dependent DNA helicase, RecQ family [Variovorax paradoxus EPS]
          Length = 573

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 145/356 (40%), Gaps = 52/356 (14%)

Query: 273 PTKSQESAIKDILQD----MSQKNRMLRILQG-------DVGSGKTLVALIAMAAAVEAG 321
           P +  +  ++D+         Q + + R+L G         G+GK+L   +    AV   
Sbjct: 12  PARRVDQVLRDVFGHKRLRAGQADVIERVLAGLSTLAVMPTGAGKSLCYQLP---AVLLE 68

Query: 322 GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           GQ V+++P+  L +   + ++    +  Q+   +    + Q+        I  G A I++
Sbjct: 69  GQTVVVSPLIALMKDQCDRLRALGIRAVQVNSSLGAEELAQSE-----ADIDAGTARIVL 123

Query: 381 GTHALFQD-----SIQYYKLILVIVDEQH---RFGVQQRLKLTQKATA------PHVLLM 426
            T     D      +  + + LV VDE H   ++G   R    +   A      P VL +
Sbjct: 124 TTPERLSDPDFLRRLGVHPVALVAVDEAHCISQWGHDFRPAFLEIGPAIRALGSPPVLAL 183

Query: 427 TATPIPRTLV-LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           TAT        +  L DI  S + +  A R  ++  +  +    E + R    + E   +
Sbjct: 184 TATAGDDVAADVMKLLDIPPSGLVDTGAYRANLRFAVEQLANEKERLRRTVEFVRETPGS 243

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             +     +  E  F ++  R          S+A+ HG++   ++ +  ++F  G  +++
Sbjct: 244 GIVYAATVKAAEHAFDALKVR--------DESVALYHGKLGARERSAAQEAFMAGEVRVM 295

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGL-AQLH---QLRGRVGRGEEISSCILLYH 597
           +AT    +GID  D   ++     H  + A LH   Q  GR GR  + + C+LL+H
Sbjct: 296 VATNAFGMGIDKPDIRFVL-----HCQMPASLHAYYQEAGRAGRDGKEARCLLLFH 346


>gi|313234298|emb|CBY10365.1| unnamed protein product [Oikopleura dioica]
          Length = 408

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 101/426 (23%), Positives = 176/426 (41%), Gaps = 68/426 (15%)

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           ++ KE  IP N+      KI+ +  +  PT  Q  AI      +  +NR + I   + GS
Sbjct: 2   RYWKESIIPENI-----LKIISDAGYKDPTPIQRQAIP-----IGMQNRDI-IGVAETGS 50

Query: 305 GKTLVALIAMAAAVEA------------GGQAVIMAPIGILAQQHYEFIKKYTQNTQI-I 351
           GKTL  L+ +   +++            G  A+I+AP   LA Q  E + K+     I  
Sbjct: 51  GKTLAFLVPLLVWIDSLPRNIRVEDADKGPYAMILAPTRELATQIEEEVVKFGSPLGIRS 110

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF 406
           V +I G    A R +   ++  G   I+I T     D I+   L+L     +++DE  R 
Sbjct: 111 VAVIGG----ASREEQGLKLRMG-CEIVIATPGRLIDVIENRYLVLSQCTYIVLDEADR- 164

Query: 407 GVQQRLKLTQKATAPHVL-LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                  +      P V  +++  P  +T++ T+     + +I  K   R+P    I  +
Sbjct: 165 -------MIDMGFEPEVQKILSHMPFRQTVMFTATMPPPVERIA-KTFMRRPCTVYIGSV 216

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS----------LHEHFT 515
            +  + I +    + +G+KA  +   +E++       V+   N           L ++  
Sbjct: 217 GKAADRIVQKAFFVPDGQKAKKMISILEDENCLEQGPVIVFVNQKKGCDVLARQLEKYGY 276

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHF 571
            +I++ HG      ++  +   KNG   +L+AT V   GID+ D S+I+     +N E +
Sbjct: 277 DAISL-HGGKGQDQRDYALACIKNGEKNVLVATDVAGRGIDIKDVSLILNYDMAKNIEDY 335

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL---KQR 628
                H++ GR GR  +    +       S N Y    +L  +E      E D     Q+
Sbjct: 336 ----THRI-GRTGRAGKSGKAVTFLTQDDSHNFYDLRQMLIESECSSCPPELDRHPEAQQ 390

Query: 629 KEGEIL 634
           K G I+
Sbjct: 391 KPGTIM 396


>gi|260431121|ref|ZP_05785092.1| primosomal protein N' (ATP-dependent helicase PriA) [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414949|gb|EEX08208.1| primosomal protein N' (ATP-dependent helicase PriA) [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 731

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 45/252 (17%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLR-----------ILQGDVGSGKTLVALIAMA 315
           R++P+ PT   +   K +  D +     LR           +L+G  GSGKT V L A+A
Sbjct: 181 RDLPY-PTLDPDRPGKALTPDQTAAADTLRAALRSGTYGTTLLKGVTGSGKTEVYLEAVA 239

Query: 316 AAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
            A+  G QA+++ P I + A    EF+ +  +                 RR+    +  G
Sbjct: 240 EALRMGRQALVLLPEIALTA----EFLTRVEERFGARPAEWHSGATMTERRRVWRMVGQG 295

Query: 375 QAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------TAPHV 423
            A +++G   ALF   + +  L L++VDE+H    +Q   +   A              V
Sbjct: 296 DAQMVVGARSALF---LPFRDLGLIVVDEEHDTSYKQEDGVHYNARDMAVLRAAICGSRV 352

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP-INRIDEVIERLKVVLSEG 482
           +L +ATP   +      G  D   +T +          ++P +  ID   E++       
Sbjct: 353 ILASATPSLESWANAEAGKYDRLDLTSR------FGAAVLPDMKTIDMRAEKM------- 399

Query: 483 KKAYWICPQIEE 494
           +   WI P + +
Sbjct: 400 QPGTWISPSLRQ 411


>gi|256269719|gb|EEU04989.1| Dbp3p [Saccharomyces cerevisiae JAY291]
          Length = 523

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 142/321 (44%), Gaps = 37/321 (11%)

Query: 300 GDVGSGKTL---VALIA--MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            + GSGKT    V  I+  M    + G Q ++++P   LA Q Y+ +   T    +    
Sbjct: 156 AETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCC 215

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF--- 406
           + G +P+  +R  L++     + +++ T     D     S+   ++  +++DE  R    
Sbjct: 216 VYGGVPKDEQRIQLKK-----SQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEK 270

Query: 407 GVQQRLK---LTQKATAPHVLLMTATPIP---RTLVLTSLGD---IDISKITEKPAGRK- 456
           G ++ +K       A+    L+ TAT  P   R L  T + +   + I    +  A ++ 
Sbjct: 271 GFEEDIKNIIRETDASKRQTLMFTAT-WPKEVRELASTFMNNPIKVSIGNTDQLTANKRI 329

Query: 457 -PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             I  V+ P  +  +++E LK   S  KK   +      KKE+   + VER N  +  + 
Sbjct: 330 TQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEA---ARVER-NLKYNGY- 384

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            ++A IHG +S   +   ++ FK+G   LL+AT V   G+D+ +   +I           
Sbjct: 385 -NVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDY 443

Query: 576 LHQLRGRVGRGEEISSCILLY 596
           +H++ GR GR  +  +   L+
Sbjct: 444 VHRI-GRTGRAGQTGTAHTLF 463


>gi|89893428|ref|YP_516915.1| hypothetical protein DSY0682 [Desulfitobacterium hafniense Y51]
 gi|89332876|dbj|BAE82471.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1600

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 150/346 (43%), Gaps = 55/346 (15%)

Query: 302 VGSGKTLVALI-AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GN 358
            G GK++   + A+ + V   G  V+++P+  L +   + +++       I E +T  G 
Sbjct: 286 TGGGKSITFQVPALMSGVNTKGLTVVISPLQSLMKDQVDNLERAG-----ITEAVTINGL 340

Query: 359 MPQAHRRKALERIAHGQAHII-IGTHALFQDSIQYYKL----ILVIVDEQHRFGVQQR-- 411
           +    R K+ ER+ +G A ++ I   +L   +I+   L    +  ++DE H F    +  
Sbjct: 341 LNPIERAKSYERVENGSASLLYISPESLRSKTIEGLLLGRNVVRFVIDEAHCFSAWGQDF 400

Query: 412 ----------LKLTQ--KATAPHVLLMTATPIPRTLVLTSLGDIDISKIT------EKPA 453
                     +K+ Q  K  +  + +   T   +  V+  +      K++         A
Sbjct: 401 RVDYLYIGDFIKVLQEKKGLSEGIPVSCFTATAKQKVIEDIRSYFQEKLSLDLEVFSANA 460

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R  ++  +   N  +E    L+ +L EGKK    CP I     ++    +    S   H
Sbjct: 461 SRVNLRYEVFEKNE-EEKYNALRDLL-EGKK----CPTIVYMTRTHAAYALAERLSKDGH 514

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII---IENAEH 570
                   HG+M   +K +  D+F  G  ++++AT+   +G+D  D  ++I   I N+  
Sbjct: 515 QAKPY---HGKMDKQEKSANQDAFIQGQVQIMVATSAFGMGVDKKDVGMVIHYEISNS-- 569

Query: 571 FGLAQLHQLRGRVGRGEEISS-CILLYHP-PLSKN----SYTRLSV 610
             L    Q  GR GR E+IS+ C +L++   LSK+    + T+LS+
Sbjct: 570 --LENYIQEAGRAGRDEDISADCYVLFNDEDLSKHFILLNQTKLSI 613


>gi|39104531|dbj|BAC98030.2| mKIAA0801 protein [Mus musculus]
          Length = 1044

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 661 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 719

Query: 581 GRVGR 585
           GR GR
Sbjct: 720 GRTGR 724


>gi|20806137|ref|NP_620798.1| probable ATP-dependent RNA helicase DDX46 [Rattus norvegicus]
 gi|81890303|sp|Q62780|DDX46_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46; AltName: Full=Helicase of
           117.4 kDa
 gi|897915|gb|AAC52210.1| RNA helicase [Rattus norvegicus]
 gi|78174325|gb|AAI07591.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Rattus norvegicus]
          Length = 1032

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 707

Query: 581 GRVGR 585
           GR GR
Sbjct: 708 GRTGR 712


>gi|330811885|ref|YP_004356347.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379993|gb|AEA71343.1| Putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 445

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 126/286 (44%), Gaps = 33/286 (11%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHI 378
           +A+I+ P   LA+Q +E +++Y QN  +    + G +   PQ  + RK ++ +      +
Sbjct: 76  RALILVPTRELAEQVHESVRQYAQNLPLSTYAVYGGVSINPQMMKLRKGVDLLVATPGRL 135

Query: 379 IIGTHALF-QDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP--HVLLMTAT--P 430
           +     LF Q+++++ +L  +++DE  R    G  + L    KA       LL +AT   
Sbjct: 136 L----DLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYKALPKKRQTLLFSATFSD 191

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWI 488
             R L    L D    +++ +      +K  ++ ++  R  E+   L       +K  W 
Sbjct: 192 AIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKRKPELFVHLM------RKNKWR 245

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +  K  +   ++VE+   L  +       IHG      ++  +D FK    ++L+AT
Sbjct: 246 QVLVFAKTRNGVDALVEKLQGLGVNADG----IHGDKPQATRQRALDRFKASEVQILVAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
            V   G+D+ D  +++  +        +H++ GR GR    GE IS
Sbjct: 302 DVAARGLDIEDLPLVVNFDLPIVAEDYIHRI-GRTGRAGSTGEAIS 346


>gi|322818915|gb|EFZ26192.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 794

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 129/336 (38%), Gaps = 67/336 (19%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ-----------AVIMAPIGILAQQHYEFIKKYTQNTQI 350
            GSGKT   L+ +   +   G            AVIMAP   LA Q Y+ ++K T  T I
Sbjct: 385 TGSGKTAAFLVPVVHYILKHGVSPARERVSYPIAVIMAPTRELALQIYDEVRKLTFRTDI 444

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR 405
             +++ G  P   R          +  I++      +D      + + ++  +++DE  R
Sbjct: 445 FYDVVYGGTPYPTR---------FENDILVACPGRLKDIFDRGIVSFSRVKFLVLDEADR 495

Query: 406 -----------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT-----------SLGDI 443
                      + V  R     + T    L+ +AT   R L L            ++G +
Sbjct: 496 MLEMGFEEQIEYLVASRYTDMPQTTERQTLMFSATFPQRILNLAKRYLRQHYYLLTVGRV 555

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEV--IERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             +            K +   I R+ E   +++L  V+ + K+   +   +E K     R
Sbjct: 556 GST-----------TKNITQKIVRVQESEKMDKLFEVIYQQKQTDLVLIFVETK-----R 599

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           +  E   +L      S A IHG     D+E  +  FK+G   +L+AT V   G+DV + +
Sbjct: 600 AAEELHYALKSEGIPS-ATIHGDRRQFDRERALRDFKDGITPILVATDVASRGLDVPNVA 658

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +I  +         H++ GR GR     +    Y+
Sbjct: 659 HVIQYDLPKEMDDYTHRI-GRTGRAGNKGTATSFYN 693


>gi|41327773|ref|NP_055644.2| probable ATP-dependent RNA helicase DDX46 [Homo sapiens]
 gi|332821955|ref|XP_517939.3| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Pan
           troglodytes]
 gi|116241326|sp|Q7L014|DDX46_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46; AltName: Full=PRP5 homolog
 gi|15126766|gb|AAH12304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapiens]
 gi|119582645|gb|EAW62241.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_d [Homo
           sapiens]
          Length = 1031

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 707

Query: 581 GRVGR 585
           GR GR
Sbjct: 708 GRTGR 712


>gi|301754307|ref|XP_002912967.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Ailuropoda melanoleuca]
          Length = 1031

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 707

Query: 581 GRVGR 585
           GR GR
Sbjct: 708 GRTGR 712


>gi|91206541|sp|Q7SBC6|DBP2_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-2
          Length = 562

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 144/343 (41%), Gaps = 49/343 (14%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +I+AP   LA Q  + I K+ ++++I  
Sbjct: 177 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRN 236

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P+  + + L R       + I T     D ++  K  L     +++DE  R  
Sbjct: 237 TCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRML 292

Query: 407 --GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
             G +             R  L   AT P  +   A       +  ++G +D++   +IT
Sbjct: 293 DMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRNLAADFLTDFIQVNIGSMDLAANHRIT 352

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +       I  V+    + D +I+ L+ ++   +    I      K+ ++    + RF  
Sbjct: 353 Q-------IVEVVSESEKRDRMIKHLEKIMEGRENQNKILIFTGTKRVAD---DITRF-- 400

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +    +++I HG     +++ V+D FK G   +++AT V   GIDV + + ++  +  
Sbjct: 401 LRQDGWPALSI-HGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYP 459

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     +H++ GR GR     + I  +    SK +   + VL+
Sbjct: 460 NNSEDYIHRI-GRTGRAGAKGTAITFFTTDNSKQARELVGVLQ 501


>gi|73971268|ref|XP_531911.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Canis familiaris]
 gi|194219918|ref|XP_001918233.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX46
           (DEAD box protein 46) (PRP5 homolog) [Equus caballus]
          Length = 1031

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 707

Query: 581 GRVGR 585
           GR GR
Sbjct: 708 GRTGR 712


>gi|99082218|ref|YP_614372.1| primosome assembly protein PriA [Ruegeria sp. TM1040]
 gi|99038498|gb|ABF65110.1| primosomal protein N' [Ruegeria sp. TM1040]
          Length = 735

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 25/149 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L A+AA +  G QA+++ P I + A    EF+K+       +    
Sbjct: 225 LLKGVTGSGKTEVYLEAVAACLRKGRQALVLLPEIALTA----EFLKRVEARFGAVPAEW 280

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ----- 410
              +    RR+    +  G A ++IG  +     + +  L L+IVDE+H    +Q     
Sbjct: 281 HSGVTMTERRRVWRMVGQGAAQLVIGARSSLY--LPFRDLGLIIVDEEHDTSYKQEEGVL 338

Query: 411 ---------RLKLTQKATAPHVLLMTATP 430
                    R  L Q      V+L +ATP
Sbjct: 339 YNARDLAVWRASLCQA----QVVLASATP 363


>gi|302765659|ref|XP_002966250.1| hypothetical protein SELMODRAFT_85554 [Selaginella moellendorffii]
 gi|302801131|ref|XP_002982322.1| hypothetical protein SELMODRAFT_116103 [Selaginella moellendorffii]
 gi|300149914|gb|EFJ16567.1| hypothetical protein SELMODRAFT_116103 [Selaginella moellendorffii]
 gi|300165670|gb|EFJ32277.1| hypothetical protein SELMODRAFT_85554 [Selaginella moellendorffii]
          Length = 411

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 124/312 (39%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++      Q+ V 
Sbjct: 79  IQQAQSGTGKTATFCSGILQQLDYNNVECQALVLAPTRELAQQIEKVMRALGDYLQVKVH 138

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-------YYKL-ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++       Y K+ +L   DE   
Sbjct: 139 ACVGGTDV----RQDQRILQAGVHVVVGTPGRVYDMLRRRALRPDYIKMFVLDEADEMLS 194

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++        +   V L +AT  P  L +T        K   KP        V I
Sbjct: 195 RGFKDQIYDIFQLLPSKVQVGLFSATMPPEALEITR-------KFMNKP--------VRI 239

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 240 LVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFCNTRRKVDWLTDKMRS 299

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 300 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 359

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 360 NYLHRI-GRSGR 370


>gi|259417319|ref|ZP_05741238.1| primosomal protein N' (ATP-dependent helicase PriA) [Silicibacter
           sp. TrichCH4B]
 gi|259346225|gb|EEW58039.1| primosomal protein N' (ATP-dependent helicase PriA) [Silicibacter
           sp. TrichCH4B]
          Length = 735

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 25/149 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L A+AA +  G QA+++ P I + A    EF+K+       +    
Sbjct: 225 LLKGVTGSGKTEVYLEAVAACLRKGRQALVLLPEIALTA----EFLKRVEARFGAVPAEW 280

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ----- 410
              +    RR+    +  G A ++IG  +     + +  L L+IVDE+H    +Q     
Sbjct: 281 HSGVTMTERRRVWRMVGQGAAQLVIGARSSLY--LPFRDLGLIIVDEEHDTSYKQEEGVL 338

Query: 411 ---------RLKLTQKATAPHVLLMTATP 430
                    R  L Q      V+L +ATP
Sbjct: 339 YNARDLAVWRASLCQA----QVVLASATP 363


>gi|85540944|sp|Q569Z5|DDX46_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46
          Length = 1032

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 707

Query: 581 GRVGR 585
           GR GR
Sbjct: 708 GRTGR 712


>gi|167908511|ref|ZP_02495716.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei NCTC
           13177]
          Length = 435

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 135/308 (43%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + I++  +  + + V
Sbjct: 19  IAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKV 78

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHII+GT     D +    L L     +++DE  R  
Sbjct: 79  LTLCGGTPMRPQTQSLE---HG-AHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRML 134

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K            P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 135 DMGFFDDIAKVA------RQCPPTRQTLLFSATYPDGIAKLSQQFL-RHP-KRVKLEERH 186

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 187 DDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 246

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 247 -HGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVYVHRI- 304

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 305 GRTGRADQ 312


>gi|89074347|ref|ZP_01160829.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89049834|gb|EAR55375.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 455

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 144/342 (42%), Gaps = 42/342 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           SPT  QE AI   L   + KN M        G+GKT   ++ +   ++ G +       A
Sbjct: 23  SPTPIQEKAIPVAL---TGKNLMA---AAQTGTGKTAGFVLPILQMLDDGTKVRAKRIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP-QAHRRKALERIAHGQAHIIIGTH 383
           +I+AP   LA Q  + IK+Y+++  +    + G +  +  +R+ +E +      I++ T 
Sbjct: 77  LILAPTRELAVQVEDNIKQYSKHLNLASMAMYGGVDYEPQKRRLIEGV-----DILVATP 131

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     +I +  +  +++DE  R      ++   K       ++   P+ R  +L 
Sbjct: 132 GRLLDMYTKRAIHFDAIETLVLDEADRMLDMGFIEDINK-------IVERLPVDRQNMLF 184

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +   K A R PI+  +      D  I++  V + +  K+  +   I+E+K  
Sbjct: 185 SATLSDQVRFLAKTAVRNPIEISVAKDASADPKIDQWLVTVDKDMKSALLSSLIQEQKWD 244

Query: 499 NFRSVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +E  +   +  T       S    H   S   +  +++ FKNG  + LIAT V  
Sbjct: 245 QALIFIETKHGAAKLVTQLEKRGISAESFHSGRSQAVRSQLLEDFKNGKLQYLIATGVAS 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
            GID+   + ++  +        +H++ GR GR    GE IS
Sbjct: 305 RGIDIEQLTRVVNYDLPFPPEEYVHRI-GRTGRAGASGEAIS 345


>gi|85713712|ref|ZP_01044702.1| Primosomal protein n [Nitrobacter sp. Nb-311A]
 gi|85699616|gb|EAQ37483.1| Primosomal protein n [Nitrobacter sp. Nb-311A]
          Length = 738

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 9/133 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           ++SQ +A+  +    S     + +L G  GSGKT V   A+A  V  G Q +I+ P I +
Sbjct: 206 SRSQRAAVDAMRALASNGTFHVALLDGVTGSGKTEVYFEAVAETVRRGKQVLILMPEIAL 265

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F  ++ +     +E  +   P+ +R +    IA G+A +++G   ALF   + 
Sbjct: 266 TGQFRDRFAARFGERP---LEWHSELTPR-NRARNWAAIAAGEAQVVVGARSALF---LP 318

Query: 392 YYKLILVIVDEQH 404
           Y  L L+IVDE+H
Sbjct: 319 YAGLGLIIVDEEH 331


>gi|294625117|ref|ZP_06703762.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292600581|gb|EFF44673.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 648

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 129/319 (40%), Gaps = 35/319 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + +++ A   +   QA+++AP   LA Q  E  +KY +      V  
Sbjct: 68  QAQTGTGKTAAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLP 127

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF 406
           + G  P A +  AL+R      H+++GT     D +        Q   L+L   DE  R 
Sbjct: 128 VYGGQPYAQQLSALKR----GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRM 183

Query: 407 G----VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD---IDISKITEKPAGRKPIK 459
           G    V+  LK   +     +   T  P  R +  T L D   + I+  T   A  +   
Sbjct: 184 GFIDDVEAVLKKLPEQRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY 243

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
             +  ++++D +   L+V   +G   +           +  ++  E      +    + A
Sbjct: 244 WWVSGLHKLDALTRILEVEPFDGMIIF-----------ARTKAATEELAQKLQARGMAAA 292

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I+G M    +E  +   K+G   +L+AT V   G+DV   S ++  +  +   + +H++
Sbjct: 293 AINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRI 352

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       IL   P
Sbjct: 353 -GRTGRAGRNGDAILFVTP 370


>gi|163869192|ref|YP_001610444.1| primosome assembly protein PriA [Bartonella tribocorum CIP 105476]
 gi|161018891|emb|CAK02449.1| primosomal replication factor Y [Bartonella tribocorum CIP 105476]
          Length = 735

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 20/174 (11%)

Query: 271 FSPTK---SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           F P +   +Q  A K + + +      + +L G  GSGKT V   A+A A + G Q +I+
Sbjct: 197 FCPPQLQGAQNEAAKLLREGVLSSQFQVFLLDGVTGSGKTEVYFEAVAQAFKGGSQVLIL 256

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALF 386
            P   L QQ  +  + Y +      E  +  MP+  R +   ++A G+  ++ G   ALF
Sbjct: 257 LPEIALTQQFLD--RFYARFGAAAAEWHSDLMPR-RRERVWRQVAEGRVRVVAGARSALF 313

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKL--------TQKATAPH--VLLMTATP 430
              + ++ L L++VDE+H    +Q  ++          + +  H  V+L +ATP
Sbjct: 314 ---LPFHALGLIVVDEEHDSAYKQEERIFYHARDMAVARGSFEHFPVILASATP 364


>gi|119895518|ref|XP_586902.3| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
 gi|297477226|ref|XP_002689237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
 gi|296485325|gb|DAA27440.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
          Length = 1031

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 707

Query: 581 GRVGR 585
           GR GR
Sbjct: 708 GRTGR 712


>gi|119582644|gb|EAW62240.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_c [Homo
           sapiens]
          Length = 1032

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 707

Query: 581 GRVGR 585
           GR GR
Sbjct: 708 GRTGR 712


>gi|5410326|gb|AAD43033.1| RNA helicase [Homo sapiens]
          Length = 1031

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 648 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 706

Query: 581 GRVGR 585
           GR GR
Sbjct: 707 GRTGR 711


>gi|58337296|ref|YP_193881.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
 gi|227903882|ref|ZP_04021687.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
 gi|58254613|gb|AAV42850.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
 gi|227868273|gb|EEJ75694.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
          Length = 590

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 131/317 (41%), Gaps = 43/317 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK+L   +    A+   G  ++++P+  L +   + +K+   N   +    +     
Sbjct: 39  TGAGKSLCYQVP---ALMNSGITLVISPLISLMKDQIDALKQNGINAAALNSATSQEKVN 95

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQRLK 413
              R+A E    G+  +I  T        F+  + +  + LV VDE H   ++G   R  
Sbjct: 96  PILRQAYE----GKIKLIYITPERLAMDYFRYQLNFLDIALVAVDEAHCISQWGHDFRPA 151

Query: 414 -------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                  +T   + P+VL +TAT  P      ++ D DIS+    P       T+I    
Sbjct: 152 YRRIYEGITSLKSNPNVLALTATATP------AVQD-DISEQLNIPKK----NTIITSFT 200

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAI 520
           R +      KVV        +I   I+   +      +N R  VE   +       S+  
Sbjct: 201 RPNL---SFKVVAFPQNTPLYIAKYIKLHPDHAGIIYTNTRKKVEGLTNYLAKNNISVGA 257

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG M + ++E V ++F+    ++++AT    +GID  +   +I  ++    +   +Q  
Sbjct: 258 YHGGMENKEREDVQEAFQFDRFQVIVATNAFGMGIDKSNVRFVIHASSAR-NIESYYQEA 316

Query: 581 GRVGRGEEISSCILLYH 597
           GR GR  E S  I++YH
Sbjct: 317 GRAGRDGEESEAIMIYH 333


>gi|332088268|gb|EGI93388.1| primosomal protein N' domain protein [Shigella boydii 3594-74]
          Length = 376

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|326429375|gb|EGD74945.1| DEAD box polypeptide 47 isoform 1 [Salpingoeca sp. ATCC 50818]
          Length = 711

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/297 (20%), Positives = 119/297 (40%), Gaps = 42/297 (14%)

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++MAP   LA Q +   +K      +    I G      +R+A          +++GT  
Sbjct: 193 LVMAPTRELASQVWREFQKV--GPSLASTCIYGGTDYEPQRRAF----RNGLDVVVGTPG 246

Query: 385 LFQD-----SIQYYKLILVIVDEQHRF-------GVQQRLKLT--QKATAPHVLLMTATP 430
              D     ++Q   L  +++DE  R         V++ L +   Q    P ++L +AT 
Sbjct: 247 RLMDHMESGALQLTNLQYLVLDEADRMLEVGFVDTVEKMLSMAVEQAGQKPQMILFSATM 306

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
            P             S +T+     K + TV   +NR    ++ L +      +   I  
Sbjct: 307 PP----------FIKSTLTKYMPEHKVVDTVGKEMNRTSTGVQHLALRCPWQARNTVIAD 356

Query: 491 QIEEKKESNFRSVVERFN---------SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            ++    ++ R+++  F          +L++     + ++HG ++   +E  +  F++G 
Sbjct: 357 VVQVYSGAHGRTMI--FTQTKRDANELALNDTLKQEVQVLHGDIAQKQRELSLQCFRDGK 414

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            + L+AT V   GID+ +  +++         + +H+  GR GR     +CI  Y P
Sbjct: 415 VRCLVATDVAARGIDIPEVDLVVQCEPPKDVESYIHR-SGRTGRAGRKGTCICFYKP 470


>gi|325570266|ref|ZP_08146132.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156749|gb|EGC68923.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 448

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 168/395 (42%), Gaps = 72/395 (18%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +PT+ QE  I  I     QK R + + Q   GSGKT   L+ +   ++A     Q VI A
Sbjct: 23  NPTEVQEKLIPVI-----QKGRSV-VGQSQTGSGKTHTFLLPLMDKIDAEKDEVQVVITA 76

Query: 329 PIGILAQQHYEFIKKYT--QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           P   LA Q Y+  K+     + +I V    G      +++ L R+ + Q H++IGT    
Sbjct: 77  PSRELATQIYQAAKQIGGFHDPEIRVSNFVGG---TDKQRQLSRLQNQQPHVVIGTPGRI 133

Query: 387 QDSIQYYKL-----ILVIVDEQH---RFGVQQRL-----KLTQKATAPHVLLMTATPIP- 432
            D I    L      + +VDE       G  + +     +L +K     +L+ +AT IP 
Sbjct: 134 LDMINEQALGVHTANVFVVDEADMTLDMGFLEEVDQIAGRLPEKL---QMLVFSAT-IPE 189

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWI 488
             R  +   + +  I +I  K      I+  +I       +++I +L   L+ G     I
Sbjct: 190 KLRPFLKKYMANPLIEEIKSKAVISDTIENWLISTKGKNTNKLIYQL---LTTGHPYLAI 246

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    +N +S V+      +     +A IHG +S  +++ +M   +N   + ++AT
Sbjct: 247 V-------FANTKSRVDEITDYLKEQGLKVAKIHGDISPRERKRIMRQVQNLDYQYVVAT 299

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQ--LHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
            +   GID+   S +I  NAE        +H++ GR GR +   + I LY P        
Sbjct: 300 DLAARGIDIEGVSHVI--NAEIPADLDFFIHRV-GRTGRNQMDGTAITLYDP-------- 348

Query: 607 RLSVLKNTEDGFLIAEEDL------KQRKEGEILG 635
                  +++G + A EDL      K+ K GEI+ 
Sbjct: 349 -------SDEGAIQAIEDLGVVFQPKEIKNGEIVA 376


>gi|117621138|ref|YP_858621.1| primosomal protein N' [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117562545|gb|ABK39493.1| primosomal protein N' [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 735

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 35/211 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++AG QA++M P IG+  Q     I ++ +   + V  +
Sbjct: 225 LLDGITGSGKTEVYLSILEPLLKAGKQALVMVPEIGLTPQT----INRFRRRFNVPVVAM 280

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
              M    R  A      G A I+IGT  A+F     ++ L ++I+DE+H    +Q+   
Sbjct: 281 NSAMNDRERLDAWLACRDGGAAILIGTRSAVF---TPFHNLGIIIIDEEHDGSFKQQDGF 337

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                   +    +A  P +LL +ATP   TL     G      +T +    +  + VI+
Sbjct: 338 RYHARDLAVMRAHRAGIP-ILLGSATPSLETLHNARSGKYHHLTLTRRAGNAQTARQVIL 396

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            I  +     RL+  LS         PQ+E+
Sbjct: 397 DIKNV-----RLQAGLS---------PQLEQ 413


>gi|289671300|ref|ZP_06492375.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 458

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 122/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + ++K      N ++
Sbjct: 43  IAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQVGKQLRKLATGIPNMKL 102

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +V  +TG MP   +  +LE  AH    +++GT    Q+  +   L L     +++DE  R
Sbjct: 103 VV--LTGGMPLGPQLASLE--AH-DPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADR 157

Query: 406 F---GVQQRLKLTQKATAPH--VLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPI 458
               G ++ ++        H   LL +AT   I RTL    L D              P+
Sbjct: 158 MLDMGFEEPIREIASRCDKHRQSLLFSATFPDIIRTLAREILKD--------------PV 203

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEH 513
           +  +   +   E+ ++   V    ++       +    ES     N R  V+      + 
Sbjct: 204 EITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLLRFNPESSVVFCNTRKEVDEVAGSLQE 263

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           F  S   +HG M   D++ V+  F N +C +L+A+ V   G+DV D S ++
Sbjct: 264 FGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVV 314


>gi|192359134|ref|YP_001980830.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
 gi|190685299|gb|ACE82977.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
          Length = 469

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 137/309 (44%), Gaps = 35/309 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQ---HYEFIKKYTQNTQI 350
           I Q   GSGKT    I +   ++      QA+++ P   LA Q       + ++T N +I
Sbjct: 56  IAQAKTGSGKTAAFGIGLLEKLQVDSFAVQALVLCPTRELADQVAKELRRLARFTHNIKI 115

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR 405
           +   + G +    +  +LER     AHI++GT     D     S+   +L  +++DE  R
Sbjct: 116 LT--LCGGVAIGPQLGSLER----GAHIVVGTPGRIVDHLRKGSLHLDRLQQLVLDEADR 169

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                 L +   A   + ++ +A    +TL+ ++    +I +++ +   R P++  +  +
Sbjct: 170 M-----LDMG-FADDINTVIASANSERQTLLFSATYPANIQQMSARYQ-RDPVRVTVESL 222

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------NFRSVVERF-NSLHEHFTSSI 518
           +   ++ +    +     +   +   +   + +      N ++  E   + L     +++
Sbjct: 223 HTSQQIRQHFYELAEGDSRTSAVINLLAHFQPASTLIFCNTKAECEELADGLQAKKVAAL 282

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+ HG M   +++ V+  F N +C +LIAT V   GID+ D   +I  N E    +++H 
Sbjct: 283 AL-HGDMEQKERDRVLVRFANKSCAVLIATDVAARGIDIKDLDAVI--NYELARDSEVHV 339

Query: 579 LR-GRVGRG 586
            R GR GR 
Sbjct: 340 HRIGRTGRA 348


>gi|62089534|gb|AAH92240.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Mus musculus]
          Length = 1027

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 707

Query: 581 GRVGR 585
           GR GR
Sbjct: 708 GRTGR 712


>gi|332234495|ref|XP_003266442.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Nomascus
           leucogenys]
          Length = 1031

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 707

Query: 581 GRVGR 585
           GR GR
Sbjct: 708 GRTGR 712


>gi|148709275|gb|EDL41221.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Mus musculus]
          Length = 963

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 581 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 639

Query: 581 GRVGR 585
           GR GR
Sbjct: 640 GRTGR 644


>gi|50311547|ref|XP_455798.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74605081|sp|Q6CJU1|DBP5_KLULA RecName: Full=ATP-dependent RNA helicase DBP5
 gi|49644934|emb|CAG98506.1| KLLA0F15950p [Kluyveromyces lactis]
          Length = 469

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 149/368 (40%), Gaps = 57/368 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+K QE A+  +++D         I Q   G+GKT    + M   V+      QA+ ++P
Sbjct: 102 PSKIQEKALPLLIRDPPHN----MIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSP 157

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E I++  + T+   +++  +        + ER     A+I++GT     D 
Sbjct: 158 ARELARQTLEVIQEMGKFTKTSSQLVVPD--------SFERNKPITANIVVGTPGTVLDL 209

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT--LVLTSLGDIDISK 447
           I+   L L  +     F + +   +  K       +     +P+T  LVL S    D   
Sbjct: 210 IRRKMLNLGSI---KVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDD--- 263

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK------------ 495
                 G +     IIP   +   +++ +V +S  K+ +  C   E K            
Sbjct: 264 ------GVRQYAKKIIP-TAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLT 316

Query: 496 --KESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                 F    +  N L+         ++I+HG +   D++ ++D F+ G  K+LI T V
Sbjct: 317 IGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNV 376

Query: 551 IEVGIDVVDASIII------IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           +  GID+   S+++      + N +      +H++ GR GR       I   H    K S
Sbjct: 377 LARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHRI-GRTGRFGRTGVAISFIH---DKKS 432

Query: 605 YTRLSVLK 612
           +  LS ++
Sbjct: 433 FEVLSAIQ 440


>gi|21243540|ref|NP_643122.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109105|gb|AAM37658.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 632

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 129/319 (40%), Gaps = 35/319 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + +++ A   +   QA+++AP   LA Q  E  +KY +      V  
Sbjct: 52  QAQTGTGKTAAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLP 111

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF 406
           + G  P A +  AL+R      H+++GT     D +        Q   L+L   DE  R 
Sbjct: 112 VYGGQPYAQQLSALKR----GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRM 167

Query: 407 G----VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD---IDISKITEKPAGRKPIK 459
           G    V+  LK   +     +   T  P  R +  T L D   + I+  T   A  +   
Sbjct: 168 GFIDDVEAVLKKLPEQRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY 227

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
             +  ++++D +   L+V   +G   +           +  ++  E      +    + A
Sbjct: 228 WWVSGLHKLDALTRILEVEPFDGMIIF-----------ARTKAATEELAQKLQARGMAAA 276

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I+G M    +E  +   K+G   +L+AT V   G+DV   S ++  +  +   + +H++
Sbjct: 277 AINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRI 336

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       IL   P
Sbjct: 337 -GRTGRAGRNGDAILFVTP 354


>gi|297295088|ref|XP_002804561.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like isoform 2
           [Macaca mulatta]
 gi|297295090|ref|XP_001109331.2| PREDICTED: probable ATP-dependent RNA helicase DDX46-like isoform 1
           [Macaca mulatta]
          Length = 1032

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 707

Query: 581 GRVGR 585
           GR GR
Sbjct: 708 GRTGR 712


>gi|261204964|ref|XP_002627219.1| eukaryotic initiation factor 4A [Ajellomyces dermatitidis SLH14081]
 gi|239592278|gb|EEQ74859.1| eukaryotic initiation factor 4A [Ajellomyces dermatitidis SLH14081]
 gi|239611568|gb|EEQ88555.1| eukaryotic initiation factor 4A [Ajellomyces dermatitidis ER-3]
 gi|327348420|gb|EGE77277.1| ATP-dependent RNA helicase eIF4A [Ajellomyces dermatitidis ATCC
           18188]
          Length = 398

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 131/299 (43%), Gaps = 58/299 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    V+      QA+I+AP   LAQQ  + +        I   
Sbjct: 66  IAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECH 125

Query: 354 IITGNMPQAHRRKALERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
              G +      KAL+          G+ H +I    L  D ++ +  +L   DE    G
Sbjct: 126 ACIGGISVREDMKALQEGPQVVVGTPGRVHDMIERRVLKTDHLKMF--VLDEADEMLSHG 183

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P++ ++ 
Sbjct: 184 FTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPVRILV- 228

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------RFN 508
                    ++ ++ L EG K ++I  + EE K      + E               + +
Sbjct: 229 ---------KKAELTL-EGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVD 278

Query: 509 SLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 279 WLTDKLTARDFTVSAMHGDMEQQQRDIIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 337


>gi|158257008|dbj|BAF84477.1| unnamed protein product [Homo sapiens]
          Length = 1032

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 707

Query: 581 GRVGR 585
           GR GR
Sbjct: 708 GRTGR 712


>gi|155966195|gb|ABU41052.1| eukaryotic translation initiation factor 4A [Lepeophtheirus
           salmonis]
          Length = 413

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 124/304 (40%), Gaps = 68/304 (22%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LAQQ  + +       +    
Sbjct: 81  IAQAQSGTGKTATFSIAILQKIDISMNRTQALILAPTRELAQQIQKVVLSLGDFLKATCY 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G    +   +ALE   HG  HI++GT     D I    L        +L   DE   
Sbjct: 141 ACIGGRSISSDIRALE---HG-PHIVVGTPGRVFDMITREHLRTENIKMFVLDEADEMLS 196

Query: 406 FGVQQRL-----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            G ++++      L Q      V+LM+AT +P           D+  +T K   R PI+ 
Sbjct: 197 RGFKEQIYDVFRHLNQDI---QVVLMSAT-MPD----------DVLDVT-KRFMRDPIRI 241

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH--------- 511
           ++           R + +  EG   +++  + EE K S    + E               
Sbjct: 242 LV-----------RKEELTLEGILQFYVFVEKEEWKLSTLCDLYETLTITQAVIFCNTRR 290

Query: 512 -----------EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
                      +HFT S   +HG MS  ++E +M  F++G+ ++LI T ++  GIDV   
Sbjct: 291 KVCWLTEKMGLKHFTCSS--MHGEMSQEEREVIMREFRSGSSRVLITTDLLARGIDVQQI 348

Query: 561 SIII 564
           S++I
Sbjct: 349 SLVI 352


>gi|330448509|ref|ZP_08312157.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492700|dbj|GAA06654.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 432

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 117/290 (40%), Gaps = 39/290 (13%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA+Q    I  YT+ T I    + G    + + K LE+       I++ T
Sbjct: 76  RALILAPTRELAEQIANNISDYTKYTSITCTAVFGGKKMSSQEKRLEQ----GVDILVAT 131

Query: 383 HA-----LFQDSIQYYKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIP 432
                  +  +++    L  +I DE  R     F    R+ L    T P  +L +AT   
Sbjct: 132 PGRLIEHMELNNVSLANLEFLIFDEADRMLDMGFIGAIRVILDDIRTKPQTMLFSATSSA 191

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +   L +    DI          KP +  + P N   + +  +   + E +K   +   I
Sbjct: 192 QMNALAA----DIL--------HKPQRITVTPENSTADTVSHVVYPVDEDRKTELLSELI 239

Query: 493 EEKKESNFRSVV------ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCK 543
            +K   N+R V+      E  N L +          + HG  +   +   ++ FK G  +
Sbjct: 240 GKK---NWRQVLVFVNYKETANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKAR 296

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +++AT V   G+D+ +   ++  +        +H++ GR GR  +  + I
Sbjct: 297 VMVATEVAARGLDIQNLPYVVNYDMPFLAEDYVHRI-GRTGRAGQKGNAI 345


>gi|52842555|ref|YP_096354.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629666|gb|AAU28407.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 589

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 151/362 (41%), Gaps = 48/362 (13%)

Query: 264 KILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--- 319
           K L ++ F +P+  Q   I  ILQ          I     G+GKT    + +   +    
Sbjct: 19  KALEDMKFITPSPIQAQTIPLILQGRDA------IALAQTGTGKTAAFALPILQNLSPEI 72

Query: 320 AGGQAVIMAP---IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           +  QA+I+AP   + I   + +E + KY +N  + + ++ G      + K L       A
Sbjct: 73  STTQALILAPTRELAIQVAEQFELLSKYQRN--VTIAVLCGGQEYGRQLKQL----RSGA 126

Query: 377 HIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLM 426
            +++GT     D I    L        IL   DE  R G  + ++  L +      + L 
Sbjct: 127 QVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMALF 186

Query: 427 TATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLS 480
           +AT +P   R +  T L D    +I  + A  K I+   +  +   + D +I  L+V   
Sbjct: 187 SAT-MPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVEDY 245

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +G   +        + +S+   V E    L +H   ++AI HG ++   +E ++  FK G
Sbjct: 246 QGVIVFV-------RTKSSTEEVAE---LLQQHGLRAMAI-HGDITQSLRERIIAQFKQG 294

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+DV   + +I  +  H     +H++ GR GR       IL   P  
Sbjct: 295 AIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRI-GRTGRAGRSGVTILFVTPKE 353

Query: 601 SK 602
           S+
Sbjct: 354 SR 355


>gi|40788370|dbj|BAA34521.2| KIAA0801 protein [Homo sapiens]
          Length = 1058

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 675 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 733

Query: 581 GRVGR 585
           GR GR
Sbjct: 734 GRTGR 738


>gi|332997987|gb|EGK17593.1| primosomal protein N' domain protein [Shigella flexneri VA-6]
          Length = 376

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|322834993|ref|YP_004215020.1| primosomal protein N' [Rahnella sp. Y9602]
 gi|321170194|gb|ADW75893.1| primosomal protein N' [Rahnella sp. Y9602]
          Length = 731

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 94/197 (47%), Gaps = 24/197 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     V+++
Sbjct: 220 LLAGVTGSGKTEVYLSVLENILAQGRQALVMVPEIGLTPQT----IARFRERFSAPVDVL 275

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQ---- 410
              +  + R     R  +G+A I+IGT  +LF     + +L ++I+DE+H    +Q    
Sbjct: 276 HSGLNDSERLAVWLRARNGEAGIVIGTRSSLF---TPFARLGVIIIDEEHDSSYKQQEGW 332

Query: 411 ----RLKLTQKATAPH--VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
               R     +A A +  +++ +ATP   TL    LG     K+T++    K  +  ++ 
Sbjct: 333 RYHARDLAVYRAHAENIPIIMGSATPALETLHNVELGKYRQLKLTKRAGNAKLARQNLLD 392

Query: 465 INRIDEVIERLKVVLSE 481
           +  +     +LKV LS+
Sbjct: 393 LKGL-----QLKVGLSQ 404


>gi|269797907|ref|YP_003311807.1| primosomal protein N' [Veillonella parvula DSM 2008]
 gi|269094536|gb|ACZ24527.1| primosomal protein N' [Veillonella parvula DSM 2008]
          Length = 727

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 19/174 (10%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           NIP   T++Q++    I   M+       +L G  GSGKT + L A A  +     A+I+
Sbjct: 196 NIPL--TEAQQAVYGPIQAAMNSHEHKTFLLHGVTGSGKTQLYLRATAKCISQDKTAIIL 253

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALF 386
            P  IL  Q    ++++ +     V +    +    R    ER+    +HIIIG   A+F
Sbjct: 254 VPEIILTDQ---IVRRFVETFGDEVVVFHSKLTVQQRNNNWERLRRKDSHIIIGARSAVF 310

Query: 387 QDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP 430
             +     + L++VDE+H          R+  +       +A    V+L +ATP
Sbjct: 311 APA---EDIGLIVVDEEHDPSYKQEDMVRYHARNVALWRAEAHGCPVILGSATP 361


>gi|78048530|ref|YP_364705.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036960|emb|CAJ24661.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 648

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 131/319 (41%), Gaps = 35/319 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + +++ A   +   QA+++AP   LA Q  E  +KY +      V  
Sbjct: 68  QAQTGTGKTAAFALPVLSNADLHQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLP 127

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF 406
           + G  P A +  AL+R      H+++GT     D +        Q   L+L   DE  R 
Sbjct: 128 VYGGQPYAQQLSALKR----GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRM 183

Query: 407 GVQQRLK--LTQKATAPHVLLMTAT--PIPRTLVLTSLGD---IDISKITEKPAGRKPIK 459
           G    ++  L +      V L +AT  P  R +  T L D   + I+  T   A  +   
Sbjct: 184 GFIDDVEAVLKKLPAQRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY 243

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
             +  ++++D +   L+V   +G   +           +  ++  E      +    + A
Sbjct: 244 WWVSGLHKLDALTRILEVEPFDGMIIF-----------ARTKAATEELAQKLQARGMAAA 292

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I+G M    +E  +   K+G   +L+AT V   G+DV   S ++  +  +   + +H++
Sbjct: 293 AINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRI 352

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       IL   P
Sbjct: 353 -GRTGRAGRNGDAILFVTP 370


>gi|291387348|ref|XP_002710262.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Oryctolagus
           cuniculus]
          Length = 1030

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 648 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 706

Query: 581 GRVGR 585
           GR GR
Sbjct: 707 GRTGR 711


>gi|291001325|ref|XP_002683229.1| ATP-dependent dead box RNA helicase [Naegleria gruberi]
 gi|284096858|gb|EFC50485.1| ATP-dependent dead box RNA helicase [Naegleria gruberi]
          Length = 892

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 150/369 (40%), Gaps = 56/369 (15%)

Query: 261 IAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++Q +L+ I     F+PT  Q+S+I  I Q          I     GSGKT+  L  +  
Sbjct: 45  LSQLLLKQIKRCGFFNPTPIQQSSIPVITQGRDV------IAMARTGSGKTVSYLFPLFE 98

Query: 317 AVE------AGGQAVIMAPIGILAQQH----YEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
            ++       G +AVI+ P   L  Q     Y+FI K +     +  +  G   +     
Sbjct: 99  RLDYKHSSIVGARAVIIVPTRELVLQVNKVIYDFIGKTSDLKTCM--LFGGKSMEGQ--- 153

Query: 367 ALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQ 416
             ER++     III T     H + +  +   ++  V+ DE  R    G+ ++L   + +
Sbjct: 154 -FERLS-ANPDIIIATPGRLLHIILETGLSLKRVEYVVFDEADRLFEMGLSEQLYQIIAK 211

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITE-----KPAGRKPIKTVIIPIN-RIDE 470
             T    LL +AT +P  +   S   +   ++       K +    +  + +  N ++  
Sbjct: 212 LPTTRQTLLFSAT-LPSAVAEFSKAGLTSPELIRLDSEVKVSDNIRLSGLFVRSNEKVAA 270

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           ++  L  V+S  +      P          R   E F +L  H+     +++G M    +
Sbjct: 271 LLYLLNSVISHRETTIIFIPT---------RHHAEYFLTLFTHYKIEATVVYGSMDQQAR 321

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEI 589
              +D F+NG   +L+ T V   GID+ D + +I  N    G  +L   R GRVGR  ++
Sbjct: 322 MENLDKFRNGEANILLVTDVAARGIDIPDVNNVI--NYNFPGKPKLFVHRVGRVGRAGKV 379

Query: 590 SSCILLYHP 598
            +   L  P
Sbjct: 380 GTAYSLIAP 388


>gi|160899925|ref|YP_001565507.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160365509|gb|ABX37122.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 481

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 133/308 (43%), Gaps = 36/308 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I Q   GSGKT    +A+ A ++      Q +++ P   LA Q    I++  +    + V
Sbjct: 65  IAQAKTGSGKTAAFALALLAKLDTRNFSVQGLVLCPTRELADQVTTEIRRLARAEDNVKV 124

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             ++G +P   +  +LE      AH+I+GT     D +    L L     +++DE  R  
Sbjct: 125 VTLSGGVPLRGQNASLEN----GAHVIVGTPGRVIDHLDRGNLNLDSLNTLVLDEADRML 180

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
             G    +    K   P           +TL+ ++     I+K+  +   R P+ TV + 
Sbjct: 181 DMGFVDDIAKVAKQCPPQR---------QTLLFSATYPEGIAKLAARFM-RDPV-TVKVA 229

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEE-KKESN--FRSVVERFNSLHEHFTS---SI 518
                E IE+    + + ++   +   +E  + ES   F +   R  +L E   +   S 
Sbjct: 230 AQHSGEQIEQRWYEVDKEERLPSVARLLEHFRPESTLAFCNTKARCRALAELLQAQGYSA 289

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG +   D++ V+  F NG+C +L+AT V   G+DV +   +I  N +     ++H 
Sbjct: 290 LELHGDLEQRDRDQVLVRFVNGSCSVLVATDVAARGLDVTNLGAVI--NVDITPDPEVHV 347

Query: 579 LR-GRVGR 585
            R GR GR
Sbjct: 348 HRIGRTGR 355


>gi|119580652|gb|EAW60248.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_h [Homo
           sapiens]
          Length = 547

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 138/353 (39%), Gaps = 59/353 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 29  MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 86

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 87  KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 142

Query: 401 DEQHRF---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G +             R  L   AT P  +   A    R     ++G++++
Sbjct: 143 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 202

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 203 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 244

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 245 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 304

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 305 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 356


>gi|6137207|gb|AAF04377.1|AF188678_1 P72 DEAD box protein [Pisum sativum]
          Length = 716

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 136/311 (43%), Gaps = 46/311 (14%)

Query: 302 VGSGKTLVALI-------AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L+       A+    + G   +++   G LA Q  +   K+++ ++I    
Sbjct: 198 TGSGKTLGYLLPAFITSSALIITPKWGPTILVLHQQGELATQIQDEAVKFSKTSRIACTC 257

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--- 406
           + G  P+  + + ++R     A I++ T     D ++  ++ L     +++DE  R    
Sbjct: 258 LYGGAPKGPQLRDIDR----GADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDM 313

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           G + +++           ++   P  R TL+ T+    ++ KI    A    +  V + I
Sbjct: 314 GFEPQIRK----------IVNGVPARRQTLMFTATWPKEVRKI----AADLLVNPVQVNI 359

Query: 466 NRIDEVIERLKV-----VLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTS 516
             +DE++    +     VL+  +K   +   ++ + + +    F S  +  + L  + T 
Sbjct: 360 GNVDELVANKSITQHIEVLAHMEKQRRLESILQSQDQGSKIIIFCSTKKMCDQLARNLTR 419

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               A I G  S  D++ V++ F++G   +L+AT V   G+DV D  +++          
Sbjct: 420 QFGAAAIRGDKSQADRDHVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYTFPTGVED 479

Query: 575 QLHQLRGRVGR 585
            LH++ GR GR
Sbjct: 480 YLHRI-GRTGR 489


>gi|47217137|emb|CAG02638.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 602

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/403 (21%), Positives = 166/403 (41%), Gaps = 86/403 (21%)

Query: 246 QFKKEIGIPINVEG-------------KIAQKILRNIPFS----PTKSQESAIKDILQDM 288
            F+K   IP+   G              + + I+ NI  S    PT  Q+ AI  I    
Sbjct: 106 NFEKYDDIPVEATGTNCPSHIESFQDVDMGEIIMGNITLSRYTRPTPVQKYAIPII---- 161

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAA------------AVEAGGQ------------- 323
             K  ++   Q   GSGKT   L+ + +            A+++ GQ             
Sbjct: 162 KSKRDLMACAQ--TGSGKTAAFLLPVLSQIYTDGPGDALQAIKSSGQENGRYGRRKQYPI 219

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           ++++AP   LA Q Y+  +K+   +++   ++ G      + + LER      H+++ T 
Sbjct: 220 SLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLER----GCHLLVATP 275

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVL---LMTATP 430
               D ++  K+ L     +++DE  R     F  Q R  + Q    P  +   +M +  
Sbjct: 276 GRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGIRQTMMFSAT 335

Query: 431 IPRTLVLTS---LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            P+ + + +   L D     +    +  + I   ++ +  +D+    L ++ + GK +  
Sbjct: 336 FPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLT 395

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +   +E KK ++    +E F     +  +SI   HG  S  D+E  +  F++G C +L+A
Sbjct: 396 LV-FVETKKGAD---ALEDFLYREGYACTSI---HGDRSQRDREEALHQFRSGRCPILVA 448

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVGR 585
           T V   G+D+ +   +I     +F L       +H++ GR GR
Sbjct: 449 TAVAARGLDISNVKHVI-----NFDLPSDIEEYVHRI-GRTGR 485


>gi|296192757|ref|XP_002744211.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Callithrix jacchus]
          Length = 1032

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 707

Query: 581 GRVGR 585
           GR GR
Sbjct: 708 GRTGR 712


>gi|289742393|gb|ADD19944.1| eukaryotic initiation factor 4a [Glossina morsitans morsitans]
          Length = 403

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 122/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q    +    +  ++   
Sbjct: 71  IAQAQSGTGKTATFSIAILQQIDTSIRDCQALILAPTRELATQIQRVVMALGEYMKVHSH 130

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRF-- 406
              G        + LE       H+++GT     D I     +  ++ L ++DE      
Sbjct: 131 ACIGGTNVREDARNLE----AGCHVVVGTPGRVYDMINRKVLRTSRIRLFVLDEADEMLS 186

Query: 407 -GVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + +++   K       V+L++AT  P  L ++            +   R P+    I
Sbjct: 187 RGFKDQIQDVFKMLPNDVQVILLSATMPPDVLEVS------------RCFMRNPVS---I 231

Query: 464 PINRIDEVIERLKVVLSEGKKAYW----ICPQIEE---KKESNFRSVVERFNSLHEHFTS 516
            + + +  +E +K      K+  W    +C   +     +   F +   + + L E  T+
Sbjct: 232 LVKKEELTLEGIKQFYINVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTEEMTT 291

Query: 517 ---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   D+E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 292 HNFTVSAMHGDMEQRDRELIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 342


>gi|260426996|ref|ZP_05780975.1| primosomal protein N' (ATP-dependent helicase PriA) [Citreicella
           sp. SE45]
 gi|260421488|gb|EEX14739.1| primosomal protein N' (ATP-dependent helicase PriA) [Citreicella
           sp. SE45]
          Length = 729

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 40/191 (20%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q  A +D+   ++       +L+G  GSGKT V L A+A  +  G QA+++ P I + A 
Sbjct: 199 QAVAAQDLRAGVASGRYGTVLLKGVTGSGKTEVYLEAVAECLAQGRQALVLLPEIALTA- 257

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQ--------AHRRKALERIAHGQAHIIIGTH-ALF 386
              EF+ +        VE   G  P           RR+  ++IA G A +++G   ALF
Sbjct: 258 ---EFLTR--------VEARFGARPAEWHSGVTVTERRRVWKQIAAGGAQLVVGARSALF 306

Query: 387 QDSIQYYKLILVIVDEQHR----------FGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
              + Y  L LV+VDE+H           +  +    L     A  V+L +ATP      
Sbjct: 307 ---LPYRDLGLVVVDEEHDTSYKQDEGVFYNARDMAVLRASICAAQVVLASATP-----S 358

Query: 437 LTSLGDIDISK 447
           L S  + D  K
Sbjct: 359 LESWANADAGK 369


>gi|148979305|ref|ZP_01815437.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145961845|gb|EDK27137.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 424

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 138/346 (39%), Gaps = 50/346 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT+ Q++ I  I+        +L + Q   GSGKTL   + +   ++ G    QA+++ P
Sbjct: 23  PTEIQQAVIPTIVSGRD----VLALAQ--TGSGKTLAFGLPLLNNIDQGSNKLQALVIVP 76

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH----AL 385
              LA Q  E +K       I    +TG      +++ L         I I T     AL
Sbjct: 77  TRELASQVTESLKPIATALSIKTVTLTGGRNADEQQQQLSTAPQ----IAIATPGRLLAL 132

Query: 386 FQDS-IQYYKLILVIVDEQHRF---GVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTS 439
            +   ++  +   +++DE  R    G    ++    A  T    LL +AT  P    L S
Sbjct: 133 IKSGELELAQCTSLVLDEADRLIDMGFWPDIQAITAALPTKRQSLLFSATLPPE---LVS 189

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---- 495
             +  +S          P K      N + E IE    ++++G KA  +   + +     
Sbjct: 190 QAETLLSN---------PKKITTHKENSVVEAIEETLYLVNKGSKAQALIALLNQNPWPQ 240

Query: 496 ------KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                  + N  ++ +R N        S++ +HG  S  ++   +DSFKNG  ++LIAT 
Sbjct: 241 VLVFIGAKDNADALTKRLNKAK----ISVSALHGNKSQEERAQALDSFKNGDTRVLIATD 296

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           V+  GI +    I+I           +H++ GR  R       I L
Sbjct: 297 VMARGIHIDQLPIVINFELPPHAATYVHRV-GRTARAGSTGCAISL 341


>gi|92115299|ref|YP_575227.1| ATP-dependent RNA helicase DbpA [Chromohalobacter salexigens DSM
           3043]
 gi|91798389|gb|ABE60528.1| ATP-dependent RNA helicase DbpA [Chromohalobacter salexigens DSM
           3043]
          Length = 465

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 131/282 (46%), Gaps = 38/282 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I QG  GSGKT    + + A +E      QA+++ P   LA Q    +++  +    + V
Sbjct: 49  IGQGQTGSGKTAAFGLGVLAKLEVKAFRVQALVLCPTRELADQVAGEVRRLARGLGNVKV 108

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF- 406
             + G  P   +R +LE   HG AH+++GT       L + S+    L  +++DE  R  
Sbjct: 109 LTLCGGAPLKPQRDSLE---HG-AHVVVGTPGRIEEHLRKGSLTLGALTTLVLDEADRML 164

Query: 407 --GVQQRLK--LTQKATAPHVLLMTAT------PIPRTLVLTSLGDIDISKITEKPAGRK 456
             G Q  ++  + Q  T+   LL +AT      P+   L+   L  ++++   +  + R+
Sbjct: 165 DMGFQAAIETIVGQTPTSRQTLLFSATYGEGIRPVAERLMREPLA-VEVASTHDDTSIRQ 223

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWI-CPQIEEKKESNFRSVVERFNSLHEHFT 515
               V     R+   +ERL  +LS   ++  + C     K+E+  + V E  N+      
Sbjct: 224 HFFRVADEEARL-PALERL--LLSHRPESSVVFC---NTKRET--QQVAEALNAAG---F 272

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S++A+ +G +   D++ ++  F N +  +L+AT V   G+D+
Sbjct: 273 SALAL-NGDLEQPDRDRILAMFANKSVSVLVATDVAARGLDI 313


>gi|75061689|sp|Q5R6D8|DDX46_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46
 gi|55731939|emb|CAH92678.1| hypothetical protein [Pongo abelii]
          Length = 1032

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 707

Query: 581 GRVGR 585
           GR GR
Sbjct: 708 GRTGR 712


>gi|23336902|tpg|DAA00076.1| TPA_exp: Prp5-like DEAD-box protein [Homo sapiens]
          Length = 1032

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 707

Query: 581 GRVGR 585
           GR GR
Sbjct: 708 GRTGR 712


>gi|71656970|ref|XP_817024.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70882190|gb|EAN95173.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 798

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 129/336 (38%), Gaps = 67/336 (19%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ-----------AVIMAPIGILAQQHYEFIKKYTQNTQI 350
            GSGKT   L+ +   +   G            AVIMAP   LA Q Y+ ++K T  T I
Sbjct: 391 TGSGKTAAFLVPVVHYILKHGVSPARERVSYPIAVIMAPTRELALQIYDEVRKLTFRTDI 450

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR 405
             +++ G  P   R          +  I++      +D      + + ++  +++DE  R
Sbjct: 451 FYDVVYGGTPYPTR---------FENDILVACPGRLKDIFDRGIVSFSRVKFLVLDEADR 501

Query: 406 -----------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT-----------SLGDI 443
                      + V  R     + T    L+ +AT   R L L            ++G +
Sbjct: 502 MLEMGFEEQIEYLVASRYTDMPQTTERQTLMFSATFPQRILNLAKRYLRQHYYLLTVGRV 561

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEV--IERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             +            K +   I R+ E   +++L  V+ + K+   +   +E K     R
Sbjct: 562 GST-----------TKNITQKIVRVQESEKMDKLFEVIYQQKQTDLVLIFVETK-----R 605

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           +  E   +L      S A IHG     D+E  +  FK+G   +L+AT V   G+DV + +
Sbjct: 606 AAEELHYALKSEGIPS-ATIHGDRRQFDRERALRDFKDGITPILVATDVASRGLDVPNVA 664

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +I  +         H++ GR GR     +    Y+
Sbjct: 665 HVIQYDLPKEMDDYTHRI-GRTGRAGNKGTATSFYN 699


>gi|94495691|ref|ZP_01302271.1| primosomal protein N' [Sphingomonas sp. SKA58]
 gi|94425079|gb|EAT10100.1| primosomal protein N' [Sphingomonas sp. SKA58]
          Length = 723

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 93/189 (49%), Gaps = 9/189 (4%)

Query: 225 RERLAYDELLAGQIALLLMRKQFKKEIGIPI--NVEGKIAQKILRNIPFSPTKSQESAIK 282
           R+ L  +  + G ++  ++R   K++I  P+  +V+         + P   +++Q +A  
Sbjct: 141 RQGLIRELAMIGGVSDAVIRGLIKQDIFEPVEVSVDTPFPMPDPDHAPPDLSEAQRAAAG 200

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
            +   +   +    +L G  GSGKT V   A+AAA+ A  Q +++ P   L +    F++
Sbjct: 201 QMADAVRAADFAPFLLDGVTGSGKTEVYFEAIAAAIRADRQVLVLLPEIALTEP---FLE 257

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVD 401
           ++ +    +       + Q+ RR+A   IA GQA +++G   ALF   + Y KL L+IVD
Sbjct: 258 RFEKRFGCVPVNWHSGLRQSERRRAWRAIASGQAQVVVGARSALF---LPYPKLGLIIVD 314

Query: 402 EQHRFGVQQ 410
           E H    +Q
Sbjct: 315 EAHEASFKQ 323


>gi|90409951|ref|ZP_01217968.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
           3TCK]
 gi|90329304|gb|EAS45561.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
           3TCK]
          Length = 462

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 141/323 (43%), Gaps = 44/323 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I QG  GSGKT    + +   +       Q++++ P   LA Q  + I+K  +    I V
Sbjct: 45  IAQGKTGSGKTAAFGLGLLEKLNVKRFRVQSLVLCPTRELADQVAKEIRKLARTIHNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G MP   +  +LE   HG AHII+GT    ++ ++   L L     +I+DE  R  
Sbjct: 105 LTLCGGMPFGPQIGSLE---HG-AHIIVGTPGRIEEHVRKGTLNLDDLEMLILDEADRML 160

Query: 407 --GVQQRLKLTQKATAPH---VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
             G Q  L     A AP     LL +AT  P+   + S+ D    +I  KP   K     
Sbjct: 161 EMGFQDSLDEIIDA-APQRRQTLLFSATYPPQ---IKSIAD----RIMFKPVMAK----- 207

Query: 462 IIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNF------RSVVERFNSLHEH 513
            +     D  I++   KV  +E +        ++ + ES        R   E  + L ++
Sbjct: 208 -VESTHDDSSIQQHFYKVDGNEQRLTALRLLLLKHRPESTVVFCNTKREAQEVSDDLVDY 266

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             SSIA+ HG +   +++  +  F N +  +L+AT V   G+D+     +I  +      
Sbjct: 267 GFSSIAL-HGDLEQRERDQALVRFANKSTSVLVATDVAARGLDIDSLDAVINYHLARDTE 325

Query: 574 AQLHQLRGRVGR-GEEISSCILL 595
             +H++ GR GR G +  +C L+
Sbjct: 326 VHVHRI-GRTGRAGSKGVACSLI 347


>gi|297617044|ref|YP_003702203.1| primosomal protein N' [Syntrophothermus lipocalidus DSM 12680]
 gi|297144881|gb|ADI01638.1| primosomal protein N' [Syntrophothermus lipocalidus DSM 12680]
          Length = 798

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 29/235 (12%)

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP----FSPTKSQESAIKDI--LQDMS 289
           GQ+    + K+F +     +  +G I +K + + P      PT  Q++AI+ I  L +  
Sbjct: 221 GQVGAQELEKRFPRSSLASLLGKGIITKKRVTDSPSEQPLLPTSHQQNAIQVISSLVNSG 280

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           Q  R L  L G  GSGKT V L  +   +    Q +++ P   LAQQ    I+ ++    
Sbjct: 281 QFARCL--LFGVTGSGKTEVYLQVVERVLALRKQVMVLVPEIALAQQ---MIRVFSARVG 335

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG-- 407
             + ++   +  A R +   RI  G+  +++G  +     +    L L+I+DE+  +   
Sbjct: 336 SRMAVLHSGLSDAERYEEYRRILTGEVDLVLGARSAVFAPLN--NLGLIIIDEEQEYTFK 393

Query: 408 -----------VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                      V QR    Q A    +LL +ATP   T     +GD  + ++ E+
Sbjct: 394 QENFPRYHAREVAQRRAQLQNAV---LLLGSATPSVETFYRAQIGDYKLLELPER 445


>gi|224095173|ref|XP_002195734.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Taeniopygia
           guttata]
          Length = 842

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 135/339 (39%), Gaps = 59/339 (17%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 318 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 375

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 376 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEAGKTNLRRCTYLVL 431

Query: 401 DEQHRF---GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G + +++            L   AT P  +   A    +  V  ++G++++
Sbjct: 432 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINVGNLEL 491

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 492 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 533

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D
Sbjct: 534 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 593

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              +I  +  +     +H++ GR  R     +    + P
Sbjct: 594 VKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTP 631


>gi|170742785|ref|YP_001771440.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168197059|gb|ACA19006.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 545

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 133/335 (39%), Gaps = 64/335 (19%)

Query: 297 ILQGDVGSGKTLVALIAMA----AAVEAGGQ-----AVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A       EA G      A+++AP   LA Q H E    Y  
Sbjct: 40  LVSAQTGSGKTVAYGLALAETLLGEAEAFGAPGAPLALVIAPTRELALQVHRELAWLYGA 99

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILV 398
               +V  + G  P+   R   E +     HI++GT    +D ++   L        +L 
Sbjct: 100 AGARVVSCVGGMDPRRESRALAEGV-----HIVVGTPGRLRDHLERRNLDPSRLRAVVLD 154

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL----GDIDISKITEKPAG 454
             DE    G ++ L+           ++ ATP+ R  +L S     G + +++  ++ A 
Sbjct: 155 EADEMLDLGFREDLEF----------ILGATPVERRTLLFSATLPKGIVALAEHYQREAR 204

Query: 455 RKPIK-------------TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           R  +                I+P      V+  L++V  E + A   C         N R
Sbjct: 205 RIAVAGERRGHADIEYRAVRILPRETELVVVNTLRLV--EARTAIVFC---------NTR 253

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           + V    ++      +   + G +   ++ + + + ++G  ++ +AT V   GID+    
Sbjct: 254 NAVRHLQAVLTERGFAAVALSGELGQGERNAALQALRDGRARVCVATDVAARGIDLPGLG 313

Query: 562 IIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILL 595
           ++I     H   A++ Q R GR GR       +LL
Sbjct: 314 LVIHAELPHD--AEVLQHRSGRTGRAGRKGISVLL 346


>gi|23501930|ref|NP_698057.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|23347874|gb|AAN29972.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
          Length = 535

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 125/300 (41%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 162 RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 217

Query: 383 HALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +        Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 218 PGRLTDLMCDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 269

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 270 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 317

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 318 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 377

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 378 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|56421682|ref|YP_149000.1| late competence protein [Geobacillus kaustophilus HTA426]
 gi|56381524|dbj|BAD77432.1| late competence protein [Geobacillus kaustophilus HTA426]
          Length = 463

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 141/340 (41%), Gaps = 67/340 (19%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           + +QE A   + Q +  ++ +L  +    G+GKT +   A+AAA+E G +  +  P   +
Sbjct: 121 SAAQEDAAMAVKQAVLDRSELL--VWAVCGAGKTEILFPAIAAALEKGWRVGLATPRTDV 178

Query: 334 AQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            +   E   ++ Q   ++ + +  G   +  R  +L         ++  TH L +    Y
Sbjct: 179 VR---ELAPRFRQAFPRVPLAVWHGGSEERGRIASL---------VLSTTHQLLR---AY 223

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPH-----VLLMTATPIPRTLVLTSLGDIDISK 447
               ++IVDE   F       L    +        ++ +TATP       +    +DI++
Sbjct: 224 RVFDVMIVDEVDAFPYSAEPMLEYAVSQARKEQSSLIYLTATP-------SRAWQLDITR 276

Query: 448 ITEK----PA-----------------GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
              K    PA                  RK ++   +P N +  V+ RL    ++GK+A+
Sbjct: 277 GKRKAVVIPARYHGRPLPVPMFEWCGNWRKRLERGRLPENVLAWVLHRL----AQGKQAF 332

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              P I+E         +E    L +     I  +H    D  +   + +F++G   LL+
Sbjct: 333 LFVPHIDE---------LEAVTRLLQRVDPRIVGVHAEAPD--RAEHVQAFRDGRVPLLV 381

Query: 547 ATTVIEVGIDVVDASIIIIENAEH-FGLAQLHQLRGRVGR 585
            TT++E G+ V +  + ++   +  F  + L Q+ GRVGR
Sbjct: 382 TTTILERGVTVPNIDVAVLGAEDRIFTESALVQIAGRVGR 421


>gi|320163650|gb|EFW40549.1| eukaryotic translation initiation factor 4A isoform 1B [Capsaspora
           owczarzaki ATCC 30864]
          Length = 419

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 129/299 (43%), Gaps = 58/299 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++  +++      QA+I+AP   LAQQ  + +            
Sbjct: 87  IAQAQSGTGKTATFSISVLQSIDTSIPHCQALILAPTRELAQQIQKVVIALGDYMNANCH 146

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G     + ++ ++++ +G AHI++GT    QD I    L        +L   DE   
Sbjct: 147 ACIGG---TNVQEDMKKLQNG-AHIVVGTPGRVQDMINRRALRTDRIKMFVLDEADEMLS 202

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V+L++AT +P           D+ ++T     R PI+ ++ 
Sbjct: 203 RGFKDQIYDVFRLMPPTIQVVLLSAT-MP----------ADVLEVTTHFM-RNPIRILV- 249

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH-FTSS----- 517
                    +R ++ L +G + ++I    EE K      + E  N      FT++     
Sbjct: 250 ---------KREELTL-DGIRQFYIAVDKEEWKLDTLCDLYETLNVTQAVIFTNTRRKVD 299

Query: 518 ------------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                       ++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 300 WLTEKMHAKDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 358


>gi|302414618|ref|XP_003005141.1| ATP-dependent RNA helicase eIF4A [Verticillium albo-atrum VaMs.102]
 gi|261356210|gb|EEY18638.1| ATP-dependent RNA helicase eIF4A [Verticillium albo-atrum VaMs.102]
          Length = 397

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 131/299 (43%), Gaps = 58/299 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +        I   
Sbjct: 65  IAQAQSGTGKTATFSISVLQKIDPAVKQCQALILAPTRELAQQIQKVVIAIGDFMNIECH 124

Query: 354 IITGNMPQAHRRKALERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
              G        KAL+          G+ H +I    L  DS++ +  +L   DE    G
Sbjct: 125 ACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDSMKMF--VLDEADEMLSRG 182

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             +++    +L  ++T   V+L++AT +P+          D+ ++T K   R PI+ ++ 
Sbjct: 183 FTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPIRILV- 227

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------RFN 508
              + DE+         EG K ++I  + EE K      + E               + +
Sbjct: 228 ---KKDELT-------LEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVD 277

Query: 509 SLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 278 WLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 336


>gi|119474651|ref|ZP_01615004.1| primosome assembly protein PriA [marine gamma proteobacterium
           HTCC2143]
 gi|119450854|gb|EAW32087.1| primosome assembly protein PriA [marine gamma proteobacterium
           HTCC2143]
          Length = 714

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 19/151 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   + AG Q +++ P IG+  Q     + ++ Q     + ++
Sbjct: 201 LLDGVTGSGKTEVYLQLIEKCLHAGQQTLVLIPEIGLTPQT----LGRFQQRFNCPIALL 256

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
              +    R  A ++   G+A IIIGT  A+F  ++Q   L L+I+DE+H    +Q+   
Sbjct: 257 HSGLTDRERLLAWQQAKTGEAGIIIGTRSAVFTPTLQ---LGLIIIDEEHDSSYKQQDGF 313

Query: 412 ------LKLTQKATAPH-VLLMTATPIPRTL 435
                 + + + A AP  +LL +ATP   TL
Sbjct: 314 RYSARDVAIKRAAMAPCPILLGSATPSLETL 344


>gi|60115445|dbj|BAD90013.1| p68 RNA helicase [Tubifex tubifex]
          Length = 490

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 133/327 (40%), Gaps = 49/327 (14%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G   +++ P   LAQQ  +  + +   + +   
Sbjct: 107 TGSGKTLSYILPAIIHINHQPRLQYGDGPVCLVLVPTRELAQQVAQVAQLFGNTSSVRNV 166

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGV 408
            + G  P+  + + L+R     A I I T     D +   K  L     +++DE  R   
Sbjct: 167 CVYGGAPKGPQIRDLQR----GAEICIATPGRLIDLLDAGKTNLQRCTYLVLDEADR--- 219

Query: 409 QQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                +      P +  +L    P  +TL+ ++    ++ ++ E         T  I IN
Sbjct: 220 -----MLDMGFEPQIRKILEQVRPDRQTLMWSATWPKEVKQLAET------FLTDYIQIN 268

Query: 467 ------RIDEVIERLKVVLSEGKKAYWICPQIEE-KKESNFRSVV-----ERFNSLHEHF 514
                   +  I ++  V SE +K   +   ++E   ESN +++V      R N L    
Sbjct: 269 IGSTQLTANHSILQIVDVCSEEEKESKLNRLLQEIMGESNNKTMVFVETKRRANDLAYKM 328

Query: 515 TSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
             +    A IHG  S  +++SV+  F+NG   +L+AT V   G+DV D   ++  +  + 
Sbjct: 329 KRAGWMAACIHGDKSQEERDSVLRDFRNGRIPILVATDVAARGLDVDDVKFVVNFDYPNC 388

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHP 598
               +H++ GR GR     +   L+ P
Sbjct: 389 SEDYVHRI-GRTGRAGHTGTAYTLFTP 414


>gi|313217515|emb|CBY38596.1| unnamed protein product [Oikopleura dioica]
 gi|313229431|emb|CBY24018.1| unnamed protein product [Oikopleura dioica]
          Length = 401

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 140/340 (41%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I+    ++      QA+I+ P
Sbjct: 51  PSAIQQRAIKQII-----KGRDV-IAQAQSGTGKTATFSISTLQVLDTSVRETQALILCP 104

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ  + I        +   +  G        + + ++  GQ H+++GT     D 
Sbjct: 105 TRELAQQVQKVILALGDYMNVQAHVCIGGTNVG---EDIRKLDFGQ-HVVVGTPGRTFDM 160

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        IL   DE    G ++++    +   P   V L++AT     L +T 
Sbjct: 161 IRRRNLRTRNIKLLILDEADEMLNRGFKEQIYDVYRYLPPATQVCLVSATLPHEILEMTH 220

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGKKA 485
               D  +I  K      + IK   + + R +   + L             +  S  +K 
Sbjct: 221 KFMSDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCSTKRKV 280

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ +E+NF                +++ +HG M   ++  +M  F++G  ++L
Sbjct: 281 DWLA---EKMREANF----------------TVSAMHGDMPQKERNEIMREFRSGQTRVL 321

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 322 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 360


>gi|257784324|ref|YP_003179541.1| single-stranded-DNA-specific exonuclease RecJ [Atopobium parvulum
           DSM 20469]
 gi|257472831|gb|ACV50950.1| single-stranded-DNA-specific exonuclease RecJ [Atopobium parvulum
           DSM 20469]
          Length = 1120

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 133/330 (40%), Gaps = 25/330 (7%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLV-ALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           K  L+ +SQ    L ++    G GK+L+  + A   A+     +V + P+  L     + 
Sbjct: 642 KKTLEVLSQGESCLSVMA--TGRGKSLIFQVYAACVALLQHKMSVFVYPLRALINDQVQS 699

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ-DSIQY---YKLI 396
           +K   +   I VE++ G      R     R+A+ +  I++ T   F   + Q+   + + 
Sbjct: 700 MKNTFEPLGISVEVLNGETDLTSREDLFARMANNELDIVLTTPEFFSLHADQFAAAHNIS 759

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP----------IPRTLVLTSLGDIDIS 446
            V+ DE H  G+         A  P VL M   P                +  L  ID  
Sbjct: 760 FVVFDEAHHVGMNASEGRLAYAQMPQVLKMLGNPQVLATTATATTQVAQRICELLSIDAD 819

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            + +    R  ++   +   +  E    L  ++S+G K   +     E+ ++  R +  R
Sbjct: 820 HVYKDKTARTNLELKDLRSAKDRECA--LLSLVSDGTKTV-VYVNSREQAQALTRMLRHR 876

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              +       +A  H  ++   +++V  +F+ G    +IAT+    G+++ D   +I+ 
Sbjct: 877 IPEIGH----KVAFYHAGLTPQIRKNVERAFRRGDVCCIIATSAFGEGVNISDIRQVILY 932

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +   FG    +Q+ GR GR  + S   +L+
Sbjct: 933 HLP-FGRVAFNQMSGRAGRDGKPSKIYMLF 961


>gi|221633589|ref|YP_002522815.1| primosomal protein N' [Thermomicrobium roseum DSM 5159]
 gi|221156444|gb|ACM05571.1| primosomal protein N' [Thermomicrobium roseum DSM 5159]
          Length = 812

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 24/197 (12%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P + T  Q+ A + I     Q      +L G  GSGKT + L A+   +  G QA+++ P
Sbjct: 266 PLTLTPEQQQAWEAIRSMFDQDPPRPLLLHGVTGSGKTELYLRAIGECLRRGRQAIVLVP 325

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQD 388
              LA Q  + +        ++V      + ++ R    E I  GQA +++G   ALF  
Sbjct: 326 EIALATQVVQRVAARFPGRTVLVH---SGLRESERSAVWEAIHQGQAAVVVGPRSALF-- 380

Query: 389 SIQYYKLILVIVDEQH-----------RF---GVQQRLKLTQKATAPHVLLMTATPIPRT 434
            +    + L+++DE+H           R+    V QRL    +A    +LL +ATP   T
Sbjct: 381 -VPLRSIGLIVIDEEHEAAYKQQEPPPRYHARAVAQRLAELHRAV---LLLGSATPDVTT 436

Query: 435 LVLTSLGDIDISKITEK 451
               +   + ++++ ++
Sbjct: 437 AYAAATSQLAVARLRQR 453


>gi|6321360|ref|NP_011437.1| Dbp3p [Saccharomyces cerevisiae S288c]
 gi|1708151|sp|P20447|DBP3_YEAST RecName: Full=ATP-dependent RNA helicase DBP3; AltName: Full=DEAD
           box protein 3; AltName: Full=Helicase CA3
 gi|172582|gb|AAA73137.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|1322595|emb|CAA96783.1| DBP3 [Saccharomyces cerevisiae]
 gi|285812127|tpg|DAA08027.1| TPA: Dbp3p [Saccharomyces cerevisiae S288c]
          Length = 523

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 142/321 (44%), Gaps = 37/321 (11%)

Query: 300 GDVGSGKTL---VALIA--MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            + GSGKT    V  I+  M    + G Q ++++P   LA Q Y+ +   T    +    
Sbjct: 156 AETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCC 215

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF--- 406
           + G +P+  +R  L++     + +++ T     D     S+   ++  +++DE  R    
Sbjct: 216 VYGGVPKDEQRIQLKK-----SQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEK 270

Query: 407 GVQQRLK---LTQKATAPHVLLMTATPIP---RTLVLTSLGD---IDISKITEKPAGRK- 456
           G ++ +K       A+    L+ TAT  P   R L  T + +   + I    +  A ++ 
Sbjct: 271 GFEEDIKNIIRETDASKRQTLMFTAT-WPKEVRELASTFMNNPIKVSIGNTDQLTANKRI 329

Query: 457 -PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             I  V+ P  +  +++E LK   S  KK   +      KKE+   + VER N  +  + 
Sbjct: 330 TQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEA---ARVER-NLKYNGY- 384

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            ++A IHG +S   +   ++ FK+G   LL+AT V   G+D+ +   +I           
Sbjct: 385 -NVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDY 443

Query: 576 LHQLRGRVGRGEEISSCILLY 596
           +H++ GR GR  +  +   L+
Sbjct: 444 VHRI-GRTGRAGQTGTAHTLF 463


>gi|14520497|ref|NP_125972.1| Hef nuclease [Pyrococcus abyssi GE5]
 gi|5457712|emb|CAB49203.1| Putative ATP-dependent ERCC4-like helicase [Pyrococcus abyssi GE5]
          Length = 752

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 18/140 (12%)

Query: 303 GSGKTLVAL-IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           G GKT++A+ IA     + GG+ +++AP   L  QH E  +K+       +  +TG +  
Sbjct: 36  GLGKTIIAMMIADYRLNKYGGKVLMLAPTKPLVLQHAETFRKFFNLPPEKIVALTGEVSP 95

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHR------FGVQQ 410
           + R KA  R     A +II T     + L    I    ++LVI DE HR      +    
Sbjct: 96  SERVKAWNR-----AKVIIATPQTVENDLLTGKINLEDVVLVIFDEAHRAVGNYAYVYIA 150

Query: 411 RLKLTQKATAPHVLLMTATP 430
           R  L Q A  PHV+ +TA+P
Sbjct: 151 REYLNQ-AKNPHVIGLTASP 169



 Score = 38.1 bits (87), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           MS  +++ ++DSF  G   +L+AT+V E G+DV +  +++        +  + Q RGR G
Sbjct: 406 MSQREQKLILDSFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSV-QRRGRTG 464

Query: 585 R 585
           R
Sbjct: 465 R 465


>gi|326537854|gb|ADZ86069.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella melitensis
           M5-90]
          Length = 575

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 121/294 (41%), Gaps = 33/294 (11%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q    ++    +T   +    G M     R+ALER     +HI++GT 
Sbjct: 26  AMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GSHIVVGTP 81

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIP 432
              +D I        Q   ++L   DE    G ++ L+  L +       L+ +AT P P
Sbjct: 82  GRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDRRTLMFSATVPKP 141

Query: 433 RTLVLTSLGD----IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
              +     +    I +   T + A    +   + P  R   +I  L  +  + + +   
Sbjct: 142 IAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTL--LYYDSQNSIIF 199

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C         + R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +AT
Sbjct: 200 C---------STREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 250

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            V   GID+ +  ++I  +        LH+  GR GR     +C+L+   P S+
Sbjct: 251 DVAARGIDLPNLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGTCVLVV--PFSR 301


>gi|170756598|ref|YP_001781574.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str.
           Okra]
 gi|169121810|gb|ACA45646.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum B1 str. Okra]
          Length = 376

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 151/350 (43%), Gaps = 52/350 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           PT  Q+ +I      M  KN    I +   G+GKTL  L+ M   +       Q +I+ P
Sbjct: 25  PTPIQKESI------MLIKNGNDVIAEAQTGTGKTLAFLLPMFENISPDINAIQGLIITP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA----- 384
              LA Q  E   K  +   + +    G      + K L+       H++I T       
Sbjct: 79  TRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLK----NNIHLVIATPGRLLDH 134

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDI 443
           L ++++ +  L  +++DE       + L +  K     ++    TP  R TL  ++  + 
Sbjct: 135 LNRNTLNFKDLKTLVLDE-----ADEMLLMGFKNDVRSII--ENTPRKRQTLCFSATMNS 187

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL---SEGKKAYWICPQIEEKKESNF 500
           ++ K+  K   R P K +II    +   ++ +K VL   ++ +K   +C  ++E  E+ F
Sbjct: 188 EVKKLAYKNM-RDP-KLIIIEKEEV--TLKNIKQVLIETTDRRKQEDLCKILDE--ENPF 241

Query: 501 RSVV-----ERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            +++      R ++L E       +   +HG ++   +E +M SFKN   + LIAT V  
Sbjct: 242 MAIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAA 301

Query: 553 VGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G+D+   + +    I ENAE +    +H++ GR GR  E     L   P
Sbjct: 302 RGLDITGVTHVFNYDIPENAESY----IHRI-GRTGRAGEKGYTFLFVAP 346


>gi|146304259|ref|YP_001191575.1| DEAD/DEAH box helicase domain-containing protein [Metallosphaera
           sedula DSM 5348]
 gi|145702509|gb|ABP95651.1| DEAD/DEAH box helicase domain protein [Metallosphaera sedula DSM
           5348]
          Length = 348

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 144/339 (42%), Gaps = 70/339 (20%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
           PTK QE AI   +   S       I+Q   GSGKT   LI +   +E    A+I+ P   
Sbjct: 21  PTKVQEIAIPVFMNGESV------IVQAKTGSGKTASYLIPV---LERYHNALILVPTRE 71

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD---- 388
           LA+Q     K+  +  +  + +I G +   + R+  E      + II+GT     D    
Sbjct: 72  LAEQVAYEAKRLGKYKRTSIGVIIGGV--GYDRQERE----SDSDIIVGTPGRILDLWGR 125

Query: 389 -SIQYYKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            ++   +  L IVDE  R     F    R+ L+ K +A +    +AT  P          
Sbjct: 126 GTLDLSRFKLAIVDEVDRMLDMGFIDDVRMILS-KTSAENFGFFSATVPP---------- 174

Query: 443 IDISKITEK--PAGR-------KPIKT--VIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            ++ ++ E+  P  R       KP++      P+   D   E++  +L +      +   
Sbjct: 175 -EVKELAEEFSPNARFLKVDEYKPVEIDHEFYPVR--DNWHEKVTKLLKDVNGKAIVFTN 231

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            + + E+ + ++ +R          S +++HG MS   +   + SFK G   +LI+T + 
Sbjct: 232 TKARAEALYDNISDRV---------STSLLHGDMSQGSRRRNLMSFKRGDSDILISTDLA 282

Query: 552 EVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVGR 585
             GIDV+D     +E   +F L +     +H++ GR GR
Sbjct: 283 ARGIDVID-----VEQVVNFDLPRDVETYIHRV-GRTGR 315


>gi|221134107|ref|ZP_03560412.1| DEAD/DEAH box helicase domain-containing protein [Glaciecola sp.
           HTCC2999]
          Length = 442

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 117/277 (42%), Gaps = 29/277 (10%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E +K   Q+TQ+   ++ G +    + + L R       I+I T
Sbjct: 78  KALILTPTRELAAQVAESVKACAQHTQLRSMVVFGGVSINPQMQGLRR----GCDILIAT 133

Query: 383 HALF-----QDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIPRT 434
                    Q+++++ +L ++++DE  R    G    +K           +M   P  R 
Sbjct: 134 PGRLLDLHQQNAVKFSQLEILVLDEADRMLDMGFIHDIKR----------IMKLIPAKRQ 183

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            +L S    D  +   K   ++PI+  + P N    ++++L V   +  K   +   I++
Sbjct: 184 TLLFSATFSDPIRELAKQFTQEPIEISVTPKNSTTPLVKQLLVHAEKSSKTTLLIKLIKD 243

Query: 495 KKESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                   F       N + +   +   + A IHG  S   +   +  FK+G  ++L+AT
Sbjct: 244 NDWQQVLVFTRTKHGANRIAQKLGNKNITAAAIHGNKSQGARTKALADFKSGDVRVLVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            +   GID+     +I  +  H     +H++ GR GR
Sbjct: 304 DIAARGIDIDQLPNVINYDLPHVPEDYVHRI-GRTGR 339


>gi|20088995|ref|NP_615070.1| Hef nuclease [Methanosarcina acetivorans C2A]
 gi|19913848|gb|AAM03550.1| helicase [Methanosarcina acetivorans C2A]
          Length = 821

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 22/164 (13%)

Query: 284 ILQDMSQKNRMLRILQGD------VGSGKTLVALIAMAAAVEA-GGQAVIMAPIGILAQQ 336
           + Q + Q N   + L+G        G GKT++AL  +A+ ++  GG+A+I++P   L  Q
Sbjct: 11  VEQRLYQLNLAGKALEGSSLVVLPTGLGKTIIALFVIASRLQRFGGKALILSPTKPLVDQ 70

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H  F KK     +  +   TG++  A R K        Q  +I+ T  + ++ +   ++ 
Sbjct: 71  HAAFFKKVMALPEEEILAFTGSIAPAEREKLW-----AQGKLIVSTPQVIENDLLTKRIS 125

Query: 397 L-----VIVDEQHR-FGVQQRLKLTQK----ATAPHVLLMTATP 430
           L     +  DE HR  G      + +K    A  PH+L +TA+P
Sbjct: 126 LEDVSHITFDEAHRAVGNYAYTFIAEKYFESAKNPHILGITASP 169


>gi|115474897|ref|NP_001061045.1| Os08g0159900 [Oryza sativa Japonica Group]
 gi|75328149|sp|Q84UQ1|RH42_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 42
 gi|29467560|dbj|BAC66730.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|37806159|dbj|BAC99664.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113623014|dbj|BAF22959.1| Os08g0159900 [Oryza sativa Japonica Group]
 gi|218200507|gb|EEC82934.1| hypothetical protein OsI_27901 [Oryza sativa Indica Group]
 gi|222639953|gb|EEE68085.1| hypothetical protein OsJ_26125 [Oryza sativa Japonica Group]
          Length = 1049

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 134/315 (42%), Gaps = 51/315 (16%)

Query: 302 VGSGKTLVALIAM-------AAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++ M        A V   G   +IMAP   L  Q +  IKK+++   I   
Sbjct: 470 TGSGKTLAFVLPMLRHVKDQPAVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKALGINCV 529

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            I G    A +   L+R     A I++ T     D +           ++  +++DE  R
Sbjct: 530 AIYGGSGVAQQISELKR----GAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADR 585

Query: 406 F---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKP-----AGR 455
               G + ++    + T P    +L +AT  PR +      +I   K+  KP      GR
Sbjct: 586 MFDMGFEPQITRIVQNTRPDRQTVLFSAT-FPRQV------EILARKVLTKPVEIQVGGR 638

Query: 456 KPIK---TVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSL 510
             +    T ++ +   +E   RL  +L E   K    +    ++K +S  +        L
Sbjct: 639 SVVNKDITQLVEVRPENERFFRLLELLGEWFDKGKILVFVHSQDKCDSLLKD-------L 691

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            +H    +++ HG     D+ES +  FK+  C LLIAT+V   G+DV +  +++  +  +
Sbjct: 692 FQHGYPCLSL-HGGKDQTDRESTLADFKSNVCSLLIATSVAARGLDVKELELVVNYDVPN 750

Query: 571 FGLAQLHQLRGRVGR 585
                +H++ GR GR
Sbjct: 751 HYEDYVHRV-GRTGR 764


>gi|330896875|gb|EGH28465.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 445

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 147/352 (41%), Gaps = 52/352 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AAAVEAGGQAVI 326
           PT  Q +AI   LQ      R LR+     GSGKT   ++ +       A V    +AVI
Sbjct: 23  PTPVQAAAIPLALQ-----GRDLRV-TAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAVI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + +++++Q T +   +ITG      +   L ++      I+IGT    
Sbjct: 77  LLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD----ILIGTPGRL 132

Query: 387 QDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATA--PHVLLMTATPIPRTL- 435
            + +    L L     +++DE  R    G  + ++      A     +L +AT     L 
Sbjct: 133 LEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGGCAGREQTMLFSATTGGAGLR 192

Query: 436 -----VLTSLGDIDISKITEKPAG-RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                VL     + ++ ++E  +G R  I T        D  + + +V+        W+ 
Sbjct: 193 EMIGKVLKDPQHLQVNSVSELASGTRHQIITA-------DHNVHKEQVL-------NWLL 238

Query: 490 PQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                +K    +N +++ +R             ++HG     D+++ +D  K G  K+++
Sbjct: 239 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
           AT V   G+DV    ++I  +    G   +H++ GR GR G +  +  L+ H
Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICH 349


>gi|291406389|ref|XP_002719529.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2
           [Oryctolagus cuniculus]
          Length = 544

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 126/314 (40%), Gaps = 47/314 (14%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER       I I T 
Sbjct: 100 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 155

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF---GVQ------------QRLKLTQKATAPHV 423
               D ++  K  L     +++DE  R    G +             R  L   AT P  
Sbjct: 156 GRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 215

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII--PINRIDEVIERLKVVLSE 481
           +   A    +  +  ++G +++S      A    ++ V +   + + +++I  ++ ++SE
Sbjct: 216 VRQLAEDFLKDYIHINIGALELS------ANHNILQIVDVCHDVEKDEKLIRLMEEIMSE 269

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
                      +E K   F     R + L             IHG  S  +++ V++ FK
Sbjct: 270 -----------KENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 318

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    + P
Sbjct: 319 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTFFTP 377

Query: 599 PLSKNSYTRLSVLK 612
              K     +SVL+
Sbjct: 378 NNIKQVSDLISVLR 391


>gi|289665687|ref|ZP_06487268.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 458

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 122/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + ++K      N ++
Sbjct: 43  IAQAPTGSGKTAAFGLGLLQQLDPALTRAQALVLCPTRELADQVGKQLRKLATGIPNMKL 102

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +V  +TG MP   +  +LE  AH    +++GT    Q+  +   L L     +++DE  R
Sbjct: 103 VV--LTGGMPLGPQLASLE--AH-DPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADR 157

Query: 406 F---GVQQRLKLTQKATAPH--VLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPI 458
               G ++ ++        H   LL +AT   I RTL    L D              P+
Sbjct: 158 MLDMGFEEPIREIASRCDKHRQSLLFSATFPDIIRTLAREILKD--------------PV 203

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEH 513
           +  +   +   E+ ++   V    ++       +    ES     N R  V+      + 
Sbjct: 204 EITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLLRFNPESSVVFCNTRKEVDEVAGSLQE 263

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           F  S   +HG M   D++ V+  F N +C +L+A+ V   G+DV D S ++
Sbjct: 264 FGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVV 314


>gi|268324987|emb|CBH38575.1| putative ski2-type helicase [uncultured archaeon]
          Length = 672

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 160/366 (43%), Gaps = 61/366 (16%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA-LIAMAAAVEAG 321
           + I+R++   P   QE A+K  L D +       ++     SGKTL+A L+ + + ++  
Sbjct: 13  EPIVRDLELYP--PQEEAMKAGLLDTANN----FVISSPTASGKTLLAELVMLKSILQDS 66

Query: 322 GQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G+ + + P+  LA + Y+ F  KY+  +   V I TG+   + R   LER      +II+
Sbjct: 67  GKCLYVVPLNALAYEKYQNFKDKYS--SVATVGISTGDYESSSRY--LERY-----NIIL 117

Query: 381 GTHALFQDSIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            T     DS+         K+ +V+VDE H  G ++R    + A A     M+  P  R 
Sbjct: 118 LTLEKL-DSLTRLKPAWLSKISVVVVDEAHVLGEEKRGPRLEGALAR---FMSFNPSARI 173

Query: 435 LVLTS-------LGDIDISKITEKPAGRKPIKTVI--------IPINRIDEVIERLKVVL 479
           + L++        G+   + + +      P+K  +        I    I+EV E  +V++
Sbjct: 174 VALSATMSNVEEFGNWLHASVIKSEWRPVPLKEEVFLAEDDRGIITRVIEEVKEDAQVLV 233

Query: 480 SEGKK------AYWICPQIEEKKE--SNFRSVVE-RFNSLHEHFTSSIAIIHGRMSDIDK 530
               K      A  I  Q++ + E       +V+   + L E     +A  +  +    +
Sbjct: 234 FVNTKRGSASFARKIAAQLKLRNEELDKLAELVDVGVDDLAEMVRFGVAYHNSWLHPEQR 293

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ---------LHQLRG 581
            ++ DSF+N   K++  T  + +G+  + A ++II N + F L +         + Q+ G
Sbjct: 294 RAIEDSFRNRILKVICCTPTLAMGVS-LPAKMVIIRNYKFFTLGRGVEPMPVCWVKQVFG 352

Query: 582 RVGRGE 587
           R GR E
Sbjct: 353 RAGRPE 358


>gi|241895669|ref|ZP_04782965.1| primosomal replication protein n [Weissella paramesenteroides ATCC
           33313]
 gi|241871036|gb|EER74787.1| primosomal replication protein n [Weissella paramesenteroides ATCC
           33313]
          Length = 806

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 70/151 (46%), Gaps = 5/151 (3%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           K++  +  + P +    Q+ A   I  ++S+ +    +L+G  GSGKT + L A+A A+ 
Sbjct: 257 KLSTPVKNSQPLTLNAEQQEAYIAIANNISENDTKTFLLEGVTGSGKTEIYLQAIAKALS 316

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G  A+++ P   L  Q    +K    +    V ++   +    R     RI   + H++
Sbjct: 317 EGQTALMLVPEITLTPQMVRRVKSRFGDD---VAVMHSGLSDGERYDEWRRIQRSEVHVV 373

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
           +G  +     ++   + L+I+DE+H    +Q
Sbjct: 374 VGARSAVFAPLK--NIGLIIIDEEHESSYKQ 402


>gi|218884491|ref|YP_002428873.1| DEAD/DEAH box helicase domain protein [Desulfurococcus
           kamchatkensis 1221n]
 gi|218766107|gb|ACL11506.1| DEAD/DEAH box helicase domain protein [Desulfurococcus
           kamchatkensis 1221n]
          Length = 932

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 131/318 (41%), Gaps = 50/318 (15%)

Query: 303 GSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           GSGKT  A+I +   V         A+ + P+  L +     IKK      + V +  G+
Sbjct: 41  GSGKTEAAVIPVFYRVRIERLKPIAAIYITPLRALNRDIERRIKKIASCFGLSVAVRHGD 100

Query: 359 MPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYY--KLILVIVDEQHRFGVQQR 411
            P+  RR+    +A    H++I T     + +  + +++Y      +I+DE H     +R
Sbjct: 101 TPERARRE----LADNPPHVLITTPESFAYIIVNEKLRHYIANTRYLIIDEFHEMVRSKR 156

Query: 412 LKLTQKATA---------PHVLLMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
             L               P  + ++AT   P     +LT  G+ D+  I ++   +  +K
Sbjct: 157 GLLFLTMLYLLGEYHGFKPLRIALSATLSNPSEYLKLLTPTGE-DVEVIGDEYVKKMDVK 215

Query: 460 TVI------IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            VI      + +   D V  RL  +L  G++   +         +N RS+ E   SL   
Sbjct: 216 VVIPGKPSSLSLLGDDSVDPRLSYILDAGRRYNGVLVF------TNTRSLAEMLGSLLRK 269

Query: 514 FTSS------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                     + + HG +S   +E V   FK G   +L+AT+ +E+GID+     +I   
Sbjct: 270 LIEKHGLDLKVGVHHGSLSRSHREEVEAGFKQGELNILVATSSMELGIDIGHIDFVI--- 326

Query: 568 AEHFGLAQLHQLRGRVGR 585
            ++    Q  +L  R+GR
Sbjct: 327 -QYLSPRQSSRLIQRIGR 343


>gi|293331893|ref|NP_001169380.1| hypothetical protein LOC100383248 [Zea mays]
 gi|224029005|gb|ACN33578.1| unknown [Zea mays]
          Length = 498

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 135/320 (42%), Gaps = 64/320 (20%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L+        +  +   G   +++AP   LA Q  +   K+ ++++I    
Sbjct: 196 TGSGKTLGYLLPGFMHIKRLQNSTRNGPTVLVLAPTRELATQILDEAVKFGRSSRISCTC 255

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--- 406
           + G  P+  + + L+R       +++ T     D ++  K+ L     +++DE  R    
Sbjct: 256 LYGGAPKGPQLRDLDR----GVDVVVATPGRLNDILEMRKVSLKQVSYLVLDEADRMLDM 311

Query: 407 GVQQRLKLTQKATAPH---VLLMTATPIPRTL-----------VLTSLGDIDI----SKI 448
           G + +++   K   PH    L+ TAT  P+ +           V  ++G +D     S I
Sbjct: 312 GFEPQIRKIVKEI-PHRRQTLMYTAT-WPKEVRRIADDLLVHPVQVTIGSVDSLVANSSI 369

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVL---SEGKKAYWICPQIEEKKESNFRSVVE 505
           T+          +I P     E   RL+ +L     G K    C        +  R   +
Sbjct: 370 TQH-------VEIITP----SEKQRRLEQILRSQDSGSKILIFC--------TTKRMCDQ 410

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              +L   F +S   IHG  S  ++E V++ F++G   +L+AT V   G+D+ D  ++I 
Sbjct: 411 LARTLTRQFGASA--IHGDKSQSEREKVLNQFRSGRSPILVATDVAARGLDIKDIRVVIN 468

Query: 566 ENAEHFGLAQLHQLRGRVGR 585
            +        +H++ GR GR
Sbjct: 469 YDFPTGVEDYVHRI-GRTGR 487


>gi|254510324|ref|ZP_05122391.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221534035|gb|EEE37023.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 455

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 148/370 (40%), Gaps = 52/370 (14%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------L 308
           +N+  K+ + I      SPT  QE AI   L+       +L I Q   G+GKT      +
Sbjct: 12  LNLNPKVLKAIEEAGYESPTPIQEGAIPAALEGRD----VLGIAQ--TGTGKTASFTLPM 65

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           + L+A   A     +++++ P   LA Q  E    Y ++ ++   ++ G +    +   +
Sbjct: 66  ITLLARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHLKLTKALLIGGVSFKEQDALI 125

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R       ++I T     D  +  KL+L     ++VDE  R        +      P +
Sbjct: 126 DR----GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADR--------MLDMGFIPDI 173

Query: 424 -LLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             + + TP  R TL  ++    +I +IT+      P +  +       E IE+  V+   
Sbjct: 174 ERIFSLTPFTRQTLFFSATMAPEIERITDTFLS-APTRVEVARQATASETIEQGVVMFKG 232

Query: 482 GK---------KAYWICPQIEEKKESNFRSVVERFNSLH------EHFTSSIAIIHGRMS 526
           G+         K        E  K +N      R   +       + +    A IHG + 
Sbjct: 233 GRRDREASQKRKTLRALIDAEGDKCTNAIIFCNRKTDVDICAKSLKKYGYDAAAIHGDLD 292

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR- 585
              +   +D F++GT +LL+A+ V   G+DV   S +   +        +H++ GR GR 
Sbjct: 293 QSQRMKTLDGFRDGTLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRI-GRTGRA 351

Query: 586 ---GEEISSC 592
              G+ I+ C
Sbjct: 352 GREGKAITIC 361


>gi|71662019|ref|XP_818022.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70883249|gb|EAN96171.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 792

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 129/336 (38%), Gaps = 67/336 (19%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ-----------AVIMAPIGILAQQHYEFIKKYTQNTQI 350
            GSGKT   L+ +   +   G            AVIMAP   LA Q Y+ ++K T  T I
Sbjct: 384 TGSGKTAAFLVPVVHYILKHGVSPARERVSYPIAVIMAPTRELALQIYDEVRKLTFRTDI 443

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR 405
             +++ G  P   R          +  I++      +D      + + ++  +++DE  R
Sbjct: 444 FYDVVYGGTPYPTR---------FENDILVACPGRLKDIFDRGIVSFSRVKFLVLDEADR 494

Query: 406 -----------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT-----------SLGDI 443
                      + V  R     + T    L+ +AT   R L L            ++G +
Sbjct: 495 MLEMGFEEQIEYLVASRYTDMPQTTERQTLMFSATFPQRILNLAKRYLRQHYYLLTVGRV 554

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEV--IERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             +            K +   I R+ E   +++L  V+ + K+   +   +E K     R
Sbjct: 555 GST-----------TKNITQKIVRVQESEKMDKLFEVIYQQKQTDLVLIFVETK-----R 598

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           +  E   +L      S A IHG     D+E  +  FK+G   +L+AT V   G+DV + +
Sbjct: 599 AAEELHYALKSEGIPS-ATIHGDRRQFDRERALRDFKDGITPILVATDVASRGLDVPNVA 657

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +I  +         H++ GR GR     +    Y+
Sbjct: 658 HVIQYDLPKEMDDYTHRI-GRTGRAGNKGTATSFYN 692


>gi|326538779|gb|ADZ86994.1| DEAD/DEAH box helicase domain protein [Brucella melitensis M5-90]
          Length = 455

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 82  RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 137

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 138 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 189

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 190 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------ATASEITQVVHPVPTKEK 237

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 238 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 297

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 298 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 356


>gi|294638261|ref|ZP_06716514.1| primosomal protein [Edwardsiella tarda ATCC 23685]
 gi|291088514|gb|EFE21075.1| primosomal protein [Edwardsiella tarda ATCC 23685]
          Length = 731

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 21/199 (10%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I  D  Q +  L  L G  GSGKT V L  +   +  G QA+++ P IG+  Q
Sbjct: 202 QATAVGAIRADDEQFSPWL--LAGVTGSGKTEVYLSVIENLLARGKQALVLVPEIGLTPQ 259

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
                I ++ Q   + V+++   +  + R     R   G++ I+IGT  ALF     + +
Sbjct: 260 T----IARFRQRFNVPVDVLHSGLNDSERLATWLRARDGESAIVIGTRSALF---TPFAR 312

Query: 395 LILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L  +I+DE+H          R+  +    L        +LL +ATP   TL    +G   
Sbjct: 313 LGGIIIDEEHDGSYKQQEGWRYHARDLAVLRAHLEGIPILLGSATPALETLHNVEVGKYR 372

Query: 445 ISKITEKPAGRKPIKTVII 463
              +T++    KP    +I
Sbjct: 373 RLCLTQRAGNAKPATQHLI 391


>gi|254432488|ref|ZP_05046191.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
 gi|197626941|gb|EDY39500.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
          Length = 610

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 148/349 (42%), Gaps = 49/349 (14%)

Query: 273 PTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIM 327
           P+  Q++AI +++  +D+        + Q   G+GKT    + + A ++A     Q +++
Sbjct: 72  PSPIQKAAIPELMLGRDL--------VGQAQTGTGKTAAFALPLLAGLDAEQRKPQVLVL 123

Query: 328 APIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           AP   LA Q  E    Y  Q  Q+    + G    A  R  +  +  G A +++GT    
Sbjct: 124 APTRELALQVAESFNSYAAQLPQVRTVAVYGG---ADFRDQIHHLRRG-AQVVVGTPGRV 179

Query: 387 QDSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTL- 435
            D +        +   L+L   DE  R G    ++  L Q      V+L +AT +P  + 
Sbjct: 180 MDHMRQGTLDLSELRSLVLDEADEMLRMGFIDDVEWVLGQLPEQRQVVLFSAT-MPAEIR 238

Query: 436 -----VLTSLGDIDI-SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                 L    +I I +K  +    R+   TV  P+      +ER  V+ SE  +   I 
Sbjct: 239 RISQQYLNGPAEITIRTKAADASRIRQRFLTVPAPLKLA--ALER--VLESETSEGVIIF 294

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                + ++   +V E   SL  H    +A+++G +    +E  ++  KNG   +L+AT 
Sbjct: 295 ----ARTKAITLTVAE---SLEAH-GYDVAVLNGDVPQAQRERTIERLKNGQVDVLVATD 346

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           V   G+DV    ++I  +    G A +H++ GR GR       IL   P
Sbjct: 347 VAARGLDVERIGLVINYDIPFDGEAYVHRI-GRTGRAGRSGEAILFLTP 394


>gi|166154995|ref|YP_001653250.1| primosome assembly protein PriA [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|165930983|emb|CAP06545.1| primosomal protein N' [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 753

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 18/211 (8%)

Query: 269 IPFSPTKSQE--SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           +P +PT +QE   AI  I Q +  +     +L G  GSGKT V L  +  A   G   ++
Sbjct: 208 LPETPTLNQEQLDAINTISQSLVAEQFQTCLLFGVTGSGKTEVYLQVIRKARALGKSVIL 267

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   L  Q   F K +  +    V ++   +  + R +   + + G  +IIIG  +  
Sbjct: 268 LVPEVALTIQTLSFFKMHFGSE---VGVLHYKLSDSERTQTWHKASRGLINIIIGPRSAI 324

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATPIPRTL 435
              IQ   L L+IVDE+H    +Q              +  K T   V+L +ATP   + 
Sbjct: 325 FCPIQ--NLGLIIVDEEHDSAYKQSDLPPFYQARDVAVMRGKMTNATVILGSATPSLESY 382

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                    +S ++++ +   P K  +I +N
Sbjct: 383 TNALSKKYTLSVLSKRASTSTPTKVFLIDMN 413


>gi|168063959|ref|XP_001783934.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664528|gb|EDQ51244.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 127/317 (40%), Gaps = 53/317 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++      Q+ V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYQLLECQALVLAPTRELAQQIEKVMRALGDYLQVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT          +AL  DSI+ +  +L   DE 
Sbjct: 141 ACVGGTSV----REDQRILQAGVHVVVGTPGRVYDMLRRNALRADSIKCF--VLDEADEM 194

Query: 404 HRFGVQQRLK-----LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
              G + ++      L QK     V + +AT  P  L +T        K   KP      
Sbjct: 195 LSRGFKDQIYDIFQLLPQKL---QVGVFSATMPPEALEITR-------KFMNKP------ 238

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFN 508
             V I + R +  +E +K       +  W    + +  E+          N R  V+   
Sbjct: 239 --VKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDLYETLAITQSVIFINTRRKVDWLT 296

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  + 
Sbjct: 297 DKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356

Query: 569 EHFGLAQLHQLRGRVGR 585
                  LH++ GR GR
Sbjct: 357 PTQPENYLHRI-GRSGR 372


>gi|325269853|ref|ZP_08136463.1| DEAD/DEAH family ATP-dependent RNA helicase [Prevotella multiformis
           DSM 16608]
 gi|324987826|gb|EGC19799.1| DEAD/DEAH family ATP-dependent RNA helicase [Prevotella multiformis
           DSM 16608]
          Length = 437

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 126/301 (41%), Gaps = 37/301 (12%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +   ++A     QAV++ P   LA Q    +K      + +   + G 
Sbjct: 37  TGSGKTYAYLLPLIQRLKASSDELQAVVLVPGRELALQSASVLKDMGSGLRAMA--LYGG 94

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR---FGVQQ 410
            P     +AL  +   +  I+  T     D     +I    +  +++DE  +    G Q+
Sbjct: 95  RPAMEEHRALREV---KPQIVFATPGRLNDHLDKANIDAGTVKWLVIDEFDKCLELGFQE 151

Query: 411 RLK--LTQKATAPHVLLMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            +   L++       +L++AT    IP  + +     +D        + R  + TV  P 
Sbjct: 152 EMMHILSRLPGIERRILLSATESESIPDFVSMGRTVRLDYRTDNSGVSDRIRLYTVASPE 211

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
               E + RL  +LS G K+  +          N+R  VER     +    +++  HG +
Sbjct: 212 KDKLETLSRL--LLSLGDKSSIVF--------LNYRDSVERTALFLKEKGFTVSWFHGGL 261

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ-LRGRVG 584
              ++E+ +  F NG+  +L++T +   G+D+ D     ++N  H+ L +  +    RVG
Sbjct: 262 EQHEREAALYRFSNGSAPILVSTDLASRGLDIPD-----VDNIIHYHLPETEENYVHRVG 316

Query: 585 R 585
           R
Sbjct: 317 R 317


>gi|295105554|emb|CBL03098.1| primosomal protein N' [Faecalibacterium prausnitzii SL3/3]
          Length = 753

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 14/207 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           LRN P + T+ Q++A   +L  +        +L G  GSGKTLV L  ++  +E G +A+
Sbjct: 205 LRNDPITLTEQQQTAYDTLLPKLEDAAPHSALLYGVTGSGKTLVFLKLISRCLELGRKAL 264

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P I +  Q       ++ +     V +    +    R    + I  G A I++GT +
Sbjct: 265 VLVPEISLTPQMILRLKGQFGRR----VAVQHSALNHTERLLQWQMIQDGGADIVVGTRS 320

Query: 385 LFQDSIQYYKLILVIVDEQH--------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
                ++   LI++  +++H        R+   +  +         +LL +ATP   +  
Sbjct: 321 AVFSPLENIGLIIIDEEQEHTYRSESAPRYSAHEVARQRAAENGALLLLASATPSTESFH 380

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVII 463
               G   + ++T++  G  P+ +V I
Sbjct: 381 AAQNGRTQLVRLTKRYGG-NPLPSVQI 406


>gi|149181312|ref|ZP_01859810.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
 gi|148851037|gb|EDL65189.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
          Length = 481

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 145/345 (42%), Gaps = 40/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT+ Q   I   L++         +++   GSGKT    I ++  +E      QA+I+ 
Sbjct: 26  TPTEVQNKVIPSALENQDL------VVKAQTGSGKTAAFGIPVSDMIEWEEKKPQALILT 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I    +  +I    + G  P + ++  L++    + H+++GT     D
Sbjct: 80  PTRELAVQVREDITNIGRFKRIKAVAVYGKEPFSKQKDELKQ----KTHVVVGTPGRVMD 135

Query: 389 SIQYYKLIL-----VIVDEQ----HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
            I+   L L     +I+DE     +R  + +   + ++  +  V ++ +  +P+      
Sbjct: 136 HIERETLDLNQIKYLIIDEADEMLNRGFIDEVEAIIKELPSNRVTMVFSATLPK------ 189

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP-QIEEKKES 498
               D+  +  K     P++  I       + IE   + + E +K   +    + E  +S
Sbjct: 190 ----DVENLCHKYMNN-PLQIEIESTGVTADTIEHSLIEVREEEKISLLKDITVVENPDS 244

Query: 499 N--FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    E  ++++     +      +HG +   D+ SVM+ FK G  + L+AT V   
Sbjct: 245 CLIFCRTKENVDTVYSELEKAGYPCERLHGGLEQEDRFSVMEGFKLGNFRYLVATDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GID+ + +++I  +      + +H+  GR GR       I L  P
Sbjct: 305 GIDIDNVTLVINYDVPMEKESYVHRT-GRTGRAGNKGKAITLSTP 348


>gi|148379738|ref|YP_001254279.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933390|ref|YP_001384035.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153934793|ref|YP_001387577.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           Hall]
 gi|148289222|emb|CAL83317.1| putative ATP-dependent RNA helicase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929434|gb|ABS34934.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152930707|gb|ABS36206.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. Hall]
          Length = 421

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 158/336 (47%), Gaps = 46/336 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT+ Q  AI      ++ +N+ + I Q + G+GKTL  L+ +   +       QA+I+AP
Sbjct: 26  PTEIQAEAI-----PLAMENKDI-IGQSETGTGKTLAYLLPIFEKITTEKREMQAIILAP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q    IK  + N+ + V+ +   + +A+ ++ +E++   + HII+G+     + 
Sbjct: 80  THELAMQINNEIKNISSNSNMDVKSM-AIIGEANIKRQIEKLKE-KPHIIVGSPGRILEL 137

Query: 390 IQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTATPIPRTLVLTS 439
           I+  K+       +++DE  +   +  LK+ ++          ++L +AT    TL +  
Sbjct: 138 IKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLMLFSATITESTLNIAK 197

Query: 440 --LGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKVVLSEGKKAYWICPQIEE 494
             + D  I K+ EK    + IK + I      RI E++ +L +  +  K+A     + EE
Sbjct: 198 DLMKDSVIVKVKEKNTVNENIKHLYITGEHRERI-EILRKL-IAATNPKRAIVFINRNEE 255

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            + +  +        L  H   +  I +G      ++  ++ F++G  ++L+++ +   G
Sbjct: 256 IELTTLK--------LQYHKIKAYGI-YGAAEKEQRKKALEDFRSGKVQILVSSDLSARG 306

Query: 555 IDVVDASII----IIENAEHFGLAQLHQLRGRVGRG 586
           +DV D + I    + EN + +    LH++ GR GR 
Sbjct: 307 LDVKDVTHIFNLDLPENPKEY----LHRV-GRTGRA 337


>gi|126460298|ref|YP_001056576.1| DEAD/DEAH box helicase domain-containing protein [Pyrobaculum
           calidifontis JCM 11548]
 gi|126250019|gb|ABO09110.1| DEAD/DEAH box helicase domain protein [Pyrobaculum calidifontis JCM
           11548]
          Length = 928

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 161/368 (43%), Gaps = 77/368 (20%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------V 325
           PT+ Q +AI ++L      N +L I     GSGKT  A++ + + +   G A       +
Sbjct: 22  PTEPQRAAIPEVLSG----NNVLII--APTGSGKTEAAMLPILSKMLENGVADKSGIFVL 75

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
            + P+  L +   + IK + +     V++  G+  +A R    +R +    HI+I T  +
Sbjct: 76  YITPLRALNRDLLDRIKWWGERLGFSVDVRHGDTDKADR----QRQSRKPPHILITTPEM 131

Query: 386 FQDSIQYYKLI-------LVIVDEQHRFGVQQR---LKLTQKATAPHV------LLMTAT 429
            Q  +   KL+        V+VDE H     +R   L L  +    HV      + ++AT
Sbjct: 132 LQAILTGRKLLEHLRELRWVVVDEVHELAEDKRGVQLSLALERLRYHVGRDFQIVGLSAT 191

Query: 430 ---PI-----------PRTLVLTSLG---DIDISKITEKPAGRKPIK-TVIIPINRIDEV 471
              P+           P  +V+ +      +D+++       RK  + + + P     +V
Sbjct: 192 VGSPVEVAKFLVGDGRPFKVVMVNFARHIQLDVARPRASDEDRKLAEASGLFP-----DV 246

Query: 472 IERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVE----RFNSLHEHFTSSIAIIHGRM 525
           + RL+++  L E  ++  I         +N RS+ E    R + L+      +A+ H  +
Sbjct: 247 VARLRLIKRLIEENRSTLIF--------TNTRSMAELLGFRLSYLYGDL--PVAVHHSSL 296

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S + + SV +  K G  K ++AT+ +E+GID+    ++I   + H    Q  +L  RVGR
Sbjct: 297 SKMVRISVEERLKKGELKAVVATSSLELGIDIGHVDLVIQYVSPH----QATRLLQRVGR 352

Query: 586 -GEEISSC 592
            G  +S+ 
Sbjct: 353 SGHRLSAV 360


>gi|121715524|ref|XP_001275371.1| RNA helicase (Dbp), putative [Aspergillus clavatus NRRL 1]
 gi|134034064|sp|A1C6C4|DBP2_ASPCL RecName: Full=ATP-dependent RNA helicase dbp2
 gi|119403528|gb|EAW13945.1| RNA helicase (Dbp), putative [Aspergillus clavatus NRRL 1]
          Length = 549

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 145/342 (42%), Gaps = 51/342 (14%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +++AP   LA Q    I K+ ++++I  
Sbjct: 170 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRN 229

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR-- 405
             + G +P+  + + L R       + I T     D ++       ++  +++DE  R  
Sbjct: 230 TCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRML 285

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
              F  Q R  ++Q           AT P  +   A+      +  ++G +D+S   +IT
Sbjct: 286 DMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRIT 345

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +       I  V+    + D++I+ L+ ++ +      I    +   +      + RF  
Sbjct: 346 Q-------IVEVVSDFEKRDKMIKHLEKIMEDRSNKILIFTGTKRIADE-----ITRF-- 391

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D + ++  +  
Sbjct: 392 LRQDGWPALSI-HGDKQQQERDWVLNEFKAGKSPIMVATDVASRGIDVRDITHVLNYDYP 450

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           +     +H++ GR GR     + I  +    SK +   +++L
Sbjct: 451 NNSEDYIHRI-GRTGRAGAKGTAITFFTTDNSKQARDLVTIL 491


>gi|90421703|ref|YP_530073.1| primosome assembly protein PriA [Rhodopseudomonas palustris BisB18]
 gi|90103717|gb|ABD85754.1| replication restart DNA helicase PriA [Rhodopseudomonas palustris
           BisB18]
          Length = 734

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 88/201 (43%), Gaps = 28/201 (13%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGI-PINVEGKIAQKILRNIPFS-----PTK 275
           +PAR RL   E+L+    LL  +    KE G  P  V+G + +  L+  P +     P  
Sbjct: 137 TPARARLI--EILSD--GLLHGKSDAIKEAGCSPGVVDGLVDEGTLKVEPMARALAPPAP 192

Query: 276 SQESAIKDILQDMSQKNRMLR-----------ILQGDVGSGKTLVALIAMAAAVEAGGQA 324
             + A  D   + +     LR           +L G  GSGKT V   A+A  +  G Q 
Sbjct: 193 DPDFAQPDFSPEQTTAADSLRALAAGGAFKVALLDGVTGSGKTEVYFEAVAEIIRRGEQT 252

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH- 383
           +I+ P   L  Q   F+ ++ Q   +        +    R +    IA G+A +++G   
Sbjct: 253 LILMPEIALTGQ---FLDRFAQRFGVRPLEWHSELTPRTRARNWAAIAAGEAQVVVGARS 309

Query: 384 ALFQDSIQYYKLILVIVDEQH 404
           ALF   + Y KL L+IVDE+H
Sbjct: 310 ALF---LPYAKLGLIIVDEEH 327


>gi|318056099|gb|ADV36250.1| Vasa [Gadus morhua]
          Length = 644

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 136/336 (40%), Gaps = 62/336 (18%)

Query: 302 VGSGKTLVALIA-----MAAAVEAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+      MA  V A         +A+I+AP   L  Q +   +K+   T 
Sbjct: 254 TGSGKTAAFLLPILQKLMADGVAASSFSEQQEPEAIIVAPTRELINQIFLEARKFAHGTC 313

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   ++ G +   H+ + L R      +++ GT     D I   K+ L     +++DE  
Sbjct: 314 VRPVVLYGGISTGHQIRDLLR----GCNVLCGTPGRLMDMIGRGKVGLTKLRYLVMDEAD 369

Query: 405 RF-------------------GVQQRLKLTQKATAPH-VLLMTATPIPRTLVLTSLGDID 444
           R                      ++R  L   AT P  +  M    + +  +  ++G + 
Sbjct: 370 RMLDMGFEPEMRRLVGSPGMPSKEERQTLMFSATYPEDIQRMAGDFLKKDYLFLAVGVVG 429

Query: 445 --ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
              S + +K          +   ++ D++++ LK   +E    +     +E K++++F  
Sbjct: 430 GACSDVEQK-------LVQVTKFSKRDQLLDILKNTGTERTMVF-----VETKRQADF-- 475

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +  F       T+SI   HG     ++E  +  F++G C +L+AT+V   G+D+ D   
Sbjct: 476 -IAAFLCRENVATTSI---HGDREQREREQALGDFRSGKCPVLVATSVAARGLDIKDVQH 531

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ++  +  +     +H++ GR GR       +  Y P
Sbjct: 532 VVNFDLPNNIDDYVHRI-GRTGRCGNTGQAVSFYDP 566


>gi|306838409|ref|ZP_07471254.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF
           2653]
 gi|306406549|gb|EFM62783.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF
           2653]
          Length = 455

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 82  RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 137

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 138 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 189

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 190 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 237

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 238 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 297

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 298 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 356


>gi|300767251|ref|ZP_07077163.1| DNA replication factor Y [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180465|ref|YP_003924593.1| DNA replication factor Y [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|300495070|gb|EFK30226.1| DNA replication factor Y [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308045956|gb|ADN98499.1| DNA replication factor Y [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 805

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+ A+  I Q + Q      +L+G  GSGKT V L +MAAA+  G  A+++ P   L  Q
Sbjct: 273 QQVAVDQITQAVDQAATTTFLLEGVTGSGKTEVYLQSMAAALAQGKTALMLVPEISLTPQ 332

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
             + +K         V ++   +    +     RI  G+A +++G  +     ++   L 
Sbjct: 333 MVQRVKGRFGKA---VAVLHSGLSSGEKYDEWRRIQRGEAQVVVGARSAVFAPLK--NLG 387

Query: 397 LVIVDEQHRFGVQQ 410
           L+++DE+H    +Q
Sbjct: 388 LIVMDEEHESTYKQ 401


>gi|223939310|ref|ZP_03631190.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223892023|gb|EEF58504.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 412

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 145/349 (41%), Gaps = 56/349 (16%)

Query: 273 PTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIM 327
           PT  Q  AI  IL  QD+        I     G+GKT    + + + +E+     + +I+
Sbjct: 24  PTPIQLRAIPLILSGQDV--------IGSAQTGTGKTAAFALPILSKLESHQPRPRLLIL 75

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LA Q    I+ + + T +   ++ G +    +  AL+        III T     
Sbjct: 76  EPTRELAAQVETAIRDFARFTNLRAAVLYGGVGYGRQMDALK----AGVDIIIATPGRLL 131

Query: 388 D-----SIQYYKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPR--TL 435
           D     + ++ ++  +++DE  R     F    R  + +     H  L +AT  P+  TL
Sbjct: 132 DHLERGTCKFDQIKYLVLDEADRMLDMGFLPDVRRIVDKCPRDRHTSLFSATVPPQIETL 191

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           +  ++ +    +I  + +  + +K VI P+              +E +K+  +   +E  
Sbjct: 192 IKWAMKNPQTIEIGARRSPAETVKHVIYPV--------------AEDQKSDLLRELLER- 236

Query: 496 KESNFRSVV---------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              N+ SV+         +R   L +    ++A++H   +  ++E  +  F+NG  ++L+
Sbjct: 237 --VNYDSVIVFCRTKHRADRIAILLKRNNHAVAVLHSNRTQREREDALKGFRNGRFEVLV 294

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           AT +   G+D+ D S +I  +        +H++ GR GR         L
Sbjct: 295 ATDIAARGLDIADVSHVINYDVPQHPEDYIHRI-GRTGRAAATGDAFTL 342


>gi|168011049|ref|XP_001758216.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690672|gb|EDQ77038.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 414

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 127/317 (40%), Gaps = 53/317 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++      Q+ V 
Sbjct: 82  IQQAQSGTGKTATFCSGILQQLDYQLLECQALVLAPTRELAQQIEKVMRALGDYLQVKVH 141

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT          +AL  DSI+ +  +L   DE 
Sbjct: 142 ACVGGTSV----REDQRILQAGVHVVVGTPGRVYDMLRRNALRADSIKCF--VLDEADEM 195

Query: 404 HRFGVQQRLK-----LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
              G + ++      L QK     V + +AT  P  L +T        K   KP      
Sbjct: 196 LSRGFKDQIYDIFQLLPQKL---QVGVFSATMPPEALEITR-------KFMNKP------ 239

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFN 508
             V I + R +  +E +K       +  W    + +  E+          N R  V+   
Sbjct: 240 --VKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDLYETLAITQSVIFINTRRKVDWLT 297

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  + 
Sbjct: 298 DKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 357

Query: 569 EHFGLAQLHQLRGRVGR 585
                  LH++ GR GR
Sbjct: 358 PTQPENYLHRI-GRSGR 373


>gi|157734244|gb|ABV68940.1| ATP-dependent DEAD-box helicase [Apocynum venetum]
          Length = 447

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 139/347 (40%), Gaps = 71/347 (20%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-----QAVIM 327
           PT  Q+ A+  ++Q          I Q   GSGKT  ++IA++    A       QA+I+
Sbjct: 55  PTPIQQRAVMPLIQGRDA------IAQAQTGSGKT--SMIALSVCQVADTSVRDVQALIL 106

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LA Q    +        I   +  G          LE+      H++ GT     
Sbjct: 107 SPTRELATQTERVLIALGDRININAHVCIGGNSVGEDIHKLEK----GVHVVSGTPGRLI 162

Query: 388 DSIQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLV- 436
           D I+   L      ++++DE  R    G +  +    +   P   V L+TAT +P  L+ 
Sbjct: 163 DMIKRRTLRTRVIKILVLDEADRMLGRGFRDNIYDAYRYLPPELQVCLITAT-LPHELIE 221

Query: 437 LTSLGDIDISKITEKPAGR--KPIKTVIIPINRID-------EVIERLKVVLS-----EG 482
           +TS    D  KI  K        IK   + + R D       ++ + L + L+       
Sbjct: 222 MTSKFMTDPVKILAKREDLTLDGIKQWFVAVEREDWKFDTLCDIYDSLTISLAVIFCNTR 281

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+     +K  SN              FT+S+  +H  M + ++E +M+ FK G  
Sbjct: 282 RKVDWLT----DKMHSN-------------QFTASV--MHSDMPNKEREVIMNEFKGGAT 322

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR----GRVGR 585
           K LI T V   GIDV    I+I     ++ L Q  +L     GR G+
Sbjct: 323 KALITTDVWARGIDVQQVGIVI-----NYDLPQNRELYIHRIGRTGK 364


>gi|146328655|ref|YP_001209667.1| helicase family protein [Dichelobacter nodosus VCS1703A]
 gi|146232125|gb|ABQ13103.1| helicase family protein [Dichelobacter nodosus VCS1703A]
          Length = 537

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE-NAEHFGLAQ 575
           S A+IH +M   D E ++D F N   ++L+A  +I  G DV DA ++II      FGL  
Sbjct: 274 SSAVIHSKMPQYDIEKILDEFDNKNVQILVAVDMINEGFDVPDADVLIINRKVNSFGL-- 331

Query: 576 LHQLRGRVGRGEE 588
             QL GRV R  E
Sbjct: 332 YRQLCGRVLRPRE 344


>gi|170719840|ref|YP_001747528.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169757843|gb|ACA71159.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 439

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 130/285 (45%), Gaps = 31/285 (10%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHI 378
           +A+++ P   LA+Q +  +++Y +N  +    + G +   PQ  R R+ ++ +      +
Sbjct: 76  RALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMRLRRGVDLLVATPGRL 135

Query: 379 IIGTHALF-QDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP---HVLLMTATPI 431
           +     LF Q+++++ ++  +++DE  R    G  + L+ +  A  P     LL +AT  
Sbjct: 136 L----DLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQ-SVYAALPRKRQTLLFSATFS 190

Query: 432 PRTLVLTSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            +  +L  L   D   I   P  A    +K  ++P+++  +V     ++    +K  W  
Sbjct: 191 DQIRMLAGLALNDPLSIEVSPRNAAATTVKQWLVPVDKKRKVDLFCHLL----RKQRWKQ 246

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +  K  +    +VER   L E   +    IHG      ++  +DSFK    ++L+AT 
Sbjct: 247 VLVFAKTRNGVDQLVERL--LGEGVNADG--IHGDRPQATRQRALDSFKAREIQVLVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
           V   G+D+ D  +++  +        +H++ GR GR    GE IS
Sbjct: 303 VAARGLDIDDLPLVVNLDLPIVAEDYVHRI-GRTGRAGNKGEAIS 346


>gi|327282024|ref|XP_003225744.1| PREDICTED: eukaryotic initiation factor 4A-II-like [Anolis
           carolinensis]
          Length = 406

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 130/291 (44%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 73  IAQAQSGTGKTATFAISILQQLEIDLKETQALVLAPTRELAQQIQKVILALGDYMGATCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 133 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK +T   V+L++AT +P          +D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYEIFQKLSTNIQVVLLSAT-MP----------MDVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|306843924|ref|ZP_07476519.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO1]
 gi|306275679|gb|EFM57403.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO1]
          Length = 455

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 82  RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 137

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 138 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 189

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 190 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 237

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 238 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 297

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 298 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 356


>gi|265994970|ref|ZP_06107527.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|262766083|gb|EEZ11872.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 455

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 82  RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 137

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 138 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 189

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 190 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 237

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 238 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 297

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 298 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 356


>gi|225452412|ref|XP_002273908.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1226

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 133/309 (43%), Gaps = 42/309 (13%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI        +    + G   ++++P   LA Q  +   K+ +++++    
Sbjct: 208 TGSGKTLGYLIPGFIHLKRIRNNPQMGPTVLVLSPTRELATQIQDEAVKFGRSSRLSCTC 267

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--- 406
           + G  P+  + + L+R     A I++ T     D ++  ++ L     +++DE  R    
Sbjct: 268 LYGGAPKGPQLRDLDR----GADIVVATPGRLNDILEMRRVSLRQVSYLVLDEADRMLDM 323

Query: 407 GVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPIK 459
           G + ++ K+ ++  A    LM     P+ +      +L +   ++I  + E  A +   +
Sbjct: 324 GFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKAITQ 383

Query: 460 TV-IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-- 516
            V ++P     + +E++      G K    C            S  +  + L  + T   
Sbjct: 384 YVEVLPYMEKHKRLEQILRSQEPGSKIIIFC------------STKKMCDQLARNLTRPF 431

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             A IHG  S  +++ V++ F+ G   +L+AT V   G+D+ D  ++I  +        +
Sbjct: 432 GAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYV 491

Query: 577 HQLRGRVGR 585
           H++ GR GR
Sbjct: 492 HRI-GRTGR 499


>gi|307183175|gb|EFN70084.1| Probable ATP-dependent RNA helicase DDX17 [Camponotus floridanus]
          Length = 705

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 144/337 (42%), Gaps = 41/337 (12%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G   +I+AP   LAQQ     + +  ++ I   
Sbjct: 155 TGSGKTLAYILPATVHINHQPRLNRGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNT 214

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR--- 405
            I G  P+  + + LER       I I T       L + +    +   +++DE  R   
Sbjct: 215 CIFGGSPKGPQARDLER----GVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLD 270

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKP 457
             F  Q R  + Q      VL+ +AT  P+ +       LT    I+I  ++   A    
Sbjct: 271 MGFEPQIRKIIEQIRPDRQVLMWSAT-WPKEVQALAEDFLTDYIQINIGSLSL--AANHN 327

Query: 458 IKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           I+  II I +  E   +L  +L E   ++   +   +E KK+     V +   ++     
Sbjct: 328 IRQ-IIEICQEHEKEYKLSQLLREIGTERGSKMIIFVETKKK-----VDDITKTIKRDGW 381

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           S+I+I HG  S  +++ V+  F+NG   +L+AT V   G+DV D   +I  +  +     
Sbjct: 382 SAISI-HGDKSQPERDYVLSEFRNGKTMILVATDVAARGLDVEDVKYVINFDYPNSSEDY 440

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +H++ GR GR +   +    + P  ++ +   ++VL+
Sbjct: 441 IHRI-GRTGRCQSAGTAYAYFTPNNARQAKELIAVLE 476


>gi|258591206|emb|CBE67503.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
           (rhlE gene) [NC10 bacterium 'Dutch sediment']
          Length = 479

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 137/352 (38%), Gaps = 36/352 (10%)

Query: 264 KILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---- 318
           K + N+ F SPT  Q  A+  +L+    ++ M   +    GSGKT   L+ +   +    
Sbjct: 14  KAVHNMGFKSPTPIQRVAVPPLLEG---RDVMASAV---TGSGKTAAFLLPILHCLMEKP 67

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               +A+++AP   LA Q  + +++   +T +    + G +    + +A  R       +
Sbjct: 68  RGTTRALVLAPTRELAAQISDHLRELAAHTPLKGAAVYGGVSMGPQEQAFRR----GVDV 123

Query: 379 IIGTHALFQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTA 428
           +I T     D  QY    L     +++DE  R     F    R  L         LL +A
Sbjct: 124 LIATPGRLLDHFQYPYARLAGIEHLVLDEADRMLDMGFLPDIRRILQHVPKKRQTLLFSA 183

Query: 429 T-PIPRTLVLTSLGDIDIS-KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           T P P   +   +    +S  I  K A    I  V  P+    E+   L + L +   + 
Sbjct: 184 TLPAPIMELARDMLQNPVSLNIERKAAPAAGITHVAYPVP--HELKSTLFLELVKNSASK 241

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +      K  +N      R     E    +   IHG  S   +   + SFK G C++L+
Sbjct: 242 HVLAFTRTKHRAN------RLADFLEKHGVTCERIHGNRSQAQRTEALASFKRGRCRVLV 295

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   GIDV    +++  +        +H++ GR GR +       L  P
Sbjct: 296 ATDIAARGIDVEALGLVVNFDVPQLPEDYIHRV-GRTGRVDATGDAYTLVSP 346


>gi|195170555|ref|XP_002026077.1| GL16096 [Drosophila persimilis]
 gi|194110957|gb|EDW33000.1| GL16096 [Drosophila persimilis]
          Length = 554

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 135/328 (41%), Gaps = 58/328 (17%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ----------AVIMAPIGILAQQHYEFIKKYTQNTQII 351
            GSGKTL  +  + A +   GQ          A+++AP   LAQQ       +  +  + 
Sbjct: 149 TGSGKTLAFI--LPAILHINGQQPLQRGEGPIALVLAPTRELAQQIQSVANDFGSSAFVR 206

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR- 405
              + G  P++ +   L+R       III T     D +Q       +   +++DE  R 
Sbjct: 207 NTCVFGGAPRSKQASDLKR----GVEIIIATPGRLLDFLQSGATNLRRCTYLVLDEADRM 262

Query: 406 ----FGVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGD-IDISKI--------- 448
               F  Q R  L Q      +L+ +AT  P   R L    LG  I +S++         
Sbjct: 263 LDMGFEPQIRKVLGQIRPDRQILMWSAT-WPKEVRQLAEDFLGSYIQVSRVQILRIQIET 321

Query: 449 -----TEKPAGRKPIKTV--IIPINRIDEVIERLKVVLS----EGKKAYWICPQIEEKKE 497
                T  P   +P   +   + +    E   +LK +LS    +      I   +  KK+
Sbjct: 322 LSARSTSGPWSCRPNHNIRQYVEVCGEHEKSAKLKDLLSHIYDQAHAPGKIIIFVATKKK 381

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           ++    + RF +    F  S+  IHG  S +D++SV++ F++G   +L+AT V   G+DV
Sbjct: 382 TD---ELARFINA---FGVSVGSIHGDKSQMDRDSVLNDFRSGRANILVATDVAARGLDV 435

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGR 585
                +I  +        +H++ GR GR
Sbjct: 436 DGIKYVINFDYPQSSEDYIHRI-GRTGR 462


>gi|189211147|ref|XP_001941904.1| ATP-dependent RNA helicase DBP3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187977997|gb|EDU44623.1| ATP-dependent RNA helicase DBP3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 601

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 131/323 (40%), Gaps = 38/323 (11%)

Query: 300 GDVGSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            + GSGKTL   +     + A       G +AVI++P   LA Q Y+ +        + V
Sbjct: 231 AETGSGKTLAFGVPCVRYISALPQEKRKGIKAVIVSPTRELAVQIYDQLVALATPAGLSV 290

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF- 406
             + G +P+  +  A  +     AHI++ T     D     S    K   V++DE  R  
Sbjct: 291 VCVYGGVPKDPQVAACRK-----AHIVVATPGRLNDLIGEGSADLSKAEYVVLDEADRML 345

Query: 407 --GVQQRLK--LTQKATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGR----- 455
             G ++ ++  ++Q       L+ TAT  P  R L  T +       I +  +G      
Sbjct: 346 DKGFEEAIRQIISQTPKKRQTLMFTATWPPSVRDLASTFMNSPVKITIGDNQSGELRANV 405

Query: 456 --KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             K +  V+ P  +   +++ LK   S   K   I      KKE+     +E F  +   
Sbjct: 406 RIKQVVEVVDPRAKEQRLLQLLKQYQSGKNKDDRILVFCLYKKEA---VRIENFIRMKGF 462

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +  IHG +S   + + + +FK G   LL+AT V   G+D+    ++I         
Sbjct: 463 ---RVGGIHGDLSQEKRSASLAAFKEGHVPLLVATDVAARGLDIPAVKVVINVTFPLTAE 519

Query: 574 AQLHQLRGRVGRGEEISSCILLY 596
             +H++ GR GR  +    I L+
Sbjct: 520 DYVHRI-GRTGRAGKEGLAITLF 541


>gi|157963590|ref|YP_001503624.1| primosomal protein N' [Shewanella pealeana ATCC 700345]
 gi|157848590|gb|ABV89089.1| primosomal protein N' [Shewanella pealeana ATCC 700345]
          Length = 731

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 27/162 (16%)

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNT 348
           Q+     +L+G  GSGKT V L  +   ++ G QA+++ P IG+  Q    F +++    
Sbjct: 216 QQGYHCTLLEGVTGSGKTEVYLALLETVLKQGKQALVLVPEIGLTPQTINRFRRRFNVKV 275

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            +I   +T N     R  A  +   G+A IIIGT +     + Y  +I  I+DE+H    
Sbjct: 276 AVIHSGLTDN----QRLDAWRQAKSGEAAIIIGTRSALFTPMLYPGVI--ILDEEHDSSF 329

Query: 409 QQRLKLTQKATAPH---------------VLLMTATPIPRTL 435
           +Q     Q+    H               VLL TATP   TL
Sbjct: 330 KQ-----QEGVGYHARDLAVMRGHLEQIPVLLGTATPSLETL 366


>gi|51712358|ref|XP_485792.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus]
 gi|82902181|ref|XP_918907.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus]
          Length = 411

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 147/343 (42%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I+M   ++      QA+I+AP
Sbjct: 61  PSAIQQRAIKQIM-----KGRDV-IAQSQSGTGKTATFSISMLQCLDIQVRETQALILAP 114

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 115 TRELAVQIQKGLLTLGDY-MNVQCHACIGGTNVDEDIRK-----LDYGQ-HVVAGTPGRV 167

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   P   V+L++AT     L 
Sbjct: 168 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 227

Query: 437 LTS--LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK------------VVLSEG 482
           +T+  + D     +       + IK   + + R +   + L             +  +  
Sbjct: 228 MTNKFMTDPICILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 287

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 288 RKVDWL---TEKMREANF----------------TVSSMHGNMPQKERESIMKEFRSGAS 328

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T +   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 329 RVLISTDIWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 370


>gi|50555013|ref|XP_504915.1| YALI0F02695p [Yarrowia lipolytica]
 gi|74632960|sp|Q6C347|FAL1_YARLI RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49650785|emb|CAG77720.1| YALI0F02695p [Yarrowia lipolytica]
          Length = 397

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 150/354 (42%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q  AI  I++          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 46  APSAIQSRAITQIIKGRDT------IAQAQSGTGKTATFSISMLEVIDTKHRETQAMVLS 99

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G    +   K LE    GQ  ++ GT     D
Sbjct: 100 PTRELATQIQSVILALGDYMNVQCHACIGGTSLSVDMKKLE---AGQ-QVVSGTPGRCLD 155

Query: 389 SIQ-----YYKLILVIVDEQHRF---GVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I+        L ++I+DE       G Q+++    +    A  V++++AT     L +T
Sbjct: 156 MIKKGCLRTKNLKMLILDEADELLNKGFQEQIYDIYRYLPAATQVVVVSATLPHSVLEMT 215

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S                   K +  P+ RI  +++R ++ L EG K Y+I  + EE K  
Sbjct: 216 S-------------------KFMTDPV-RI--LVKRDELTL-EGLKQYFIAVEQEEWK-- 250

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  +  +HG M+  D++S+M+
Sbjct: 251 -FDTLCDLYDTLTITQAVIFCNTKKKVDWLTQQMKDNNFT--VCSMHGDMAQKDRDSIMN 307

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F++G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 308 EFRSGRSRVLISTDVWARGIDVQQVSLVINYDLPPNRENY----IHRI-GRSGR 356


>gi|311067228|ref|YP_003972151.1| putative ATP-dependent RNA helicase [Bacillus atrophaeus 1942]
 gi|310867745|gb|ADP31220.1| putative ATP-dependent RNA helicase [Bacillus atrophaeus 1942]
          Length = 376

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 142/322 (44%), Gaps = 40/322 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I +   G+GKTL   + +   ++      QAVI+AP   L  Q ++ I+ +   +++   
Sbjct: 45  IAESPTGTGKTLAYALPVLERIQPEQKHAQAVILAPSRELVMQIFQVIQDWKSGSELRAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE------ 402
            I G    A+ +K +E++     HII+GT     + I+  KL +     +++DE      
Sbjct: 105 SIIGG---ANVKKQVEKLKK-HPHIIVGTPGRVSELIKMKKLKMHEVKTIVLDEADQLIL 160

Query: 403 -QHRFGVQQRLKLTQKATAPHVLLMTATPIPRT-LVLTSLG-DIDISKITEKPAGRKPIK 459
            +HR  ++Q +K T K     +L  +AT    T  VL  +  + ++ K+         +K
Sbjct: 161 PEHRETMKQIIKTTLKDR--QLLCFSATLKQETEQVLREMTQEPEVLKVERSQHDAGKVK 218

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
              +  ++ D+V    K+   +G +A      I      N     E+    H      + 
Sbjct: 219 HQYLVCDQRDKVKLLQKLSRLQGMQALVFVRDI-----GNLSVYAEKLAYHH----VDLG 269

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII---IENAEHFGLAQL 576
           I+H     +++  ++ +F+NG   LL+AT +   G+D+ +   +I   I + + +    +
Sbjct: 270 ILHSEAKKMERAKILAAFENGEFPLLLATDIAARGLDIENLPYVIHADIPDEDGY----I 325

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           H+  GR GR  +  + I L  P
Sbjct: 326 HR-SGRTGRAGKEGTVISLVTP 346


>gi|229035098|ref|ZP_04189045.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1271]
 gi|228728283|gb|EEL79312.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1271]
          Length = 481

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 137/319 (42%), Gaps = 32/319 (10%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI-SKITEKPAG--RKPIKT 460
             F  Q    + +  T    +L +AT +P+ +   S   ++  + I  K AG     I+ 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPKDVEKLSRTYMNAPTHIEIKAAGITTDKIEH 219

Query: 461 VIIPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            +  + R +E +  LK + + E   +  I  + +E  +  +R + +R N   +       
Sbjct: 220 TLFEV-REEEKLSLLKDITMIENPDSCIIFCRTQENVDHVYRQL-KRVNYPCDK------ 271

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      + +H+ 
Sbjct: 272 -IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRT 330

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       I    P
Sbjct: 331 -GRTGRAGNSGKAITFITP 348


>gi|260783339|ref|XP_002586733.1| hypothetical protein BRAFLDRAFT_248039 [Branchiostoma floridae]
 gi|229271857|gb|EEN42744.1| hypothetical protein BRAFLDRAFT_248039 [Branchiostoma floridae]
          Length = 433

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 129/324 (39%), Gaps = 51/324 (15%)

Query: 302 VGSGKTLVALIAMAAAVE---------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            G+GKTL  L+     ++          G   ++++P   LA Q  +  KKY+      V
Sbjct: 121 TGTGKTLAFLLPGLIHIDLQPCPRSQRGGPNMLVLSPTRELALQIEKEAKKYSYKGIKCV 180

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRF- 406
            +  G      RR  +  +  G   II+ T     D +         +  +++DE  R  
Sbjct: 181 CVYGG----GSRRDQINLVQKG-VEIIVATPGRLNDLLMNGILNITSVTFLVLDEADRML 235

Query: 407 --GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             G +             R  +   AT P  +   AT   +   + ++G +D++      
Sbjct: 236 DMGFEPQIMKILLDIRPDRQTIMTSATWPPGVRRLATKYMKNPFMVNVGSLDLA------ 289

Query: 453 AGRKPIKTVIIPINR---IDEVIERLKVVLSEGKK----AYWICPQIEEKKESNFRSVVE 505
                +   ++ +N+   +  V + ++++  E KK     + +    EE K   F     
Sbjct: 290 VSAFNLSLFVVKVNKTLTVHSVTQYVEIIDDEEKKDRVRQFCMEEMDEEDKAMIFVGRKV 349

Query: 506 RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             + L   F+    +   IHG  S  D+ES +++ K+G  ++LIAT V   GID+ D + 
Sbjct: 350 TADDLSSDFSLDGINCECIHGDRSQCDRESALEALKDGVVRILIATDVASRGIDIKDVTW 409

Query: 563 IIIENAEHFGLAQLHQLRGRVGRG 586
           ++  +        +H++ GR GR 
Sbjct: 410 VVNYDFPRDMEEYVHRV-GRTGRA 432


>gi|290562842|ref|NP_001166829.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
 gi|95102744|gb|ABF51313.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
          Length = 512

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 148/356 (41%), Gaps = 52/356 (14%)

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYE 339
           MS KN ++ + Q   GSGKTL  ++     +          G  A+++AP   LAQQ  +
Sbjct: 115 MSGKN-LVGVAQ--TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 171

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYK 394
               +   + +    + G  P+  + + LER       I+I T       L + +    +
Sbjct: 172 VAADFGHTSYVRNTCVFGGAPKREQARDLER----GVEIVIATPGRLIDFLEKGTTNLQR 227

Query: 395 LILVIVDEQHRF---GVQQRL-KLTQKATAPHVLLMTATPIPR---TLVLTSLGD---ID 444
              +++DE  R    G + ++ K+ ++       LM +   P+    L    LGD   I+
Sbjct: 228 CTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQIN 287

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           I  + +  A    ++  I+ I +  E   +L V+L E          I + +E   ++++
Sbjct: 288 IGSL-QLSANHNILQ--IVDICQEHEKENKLNVLLQE----------IGQSQEPGAKTII 334

Query: 505 --------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                   E  +     +      +HG  +  +++ V+  FK G   +L+AT V   G+D
Sbjct: 335 FVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLD 394

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           V     +I  +  +     +H++ GR GR +   +    + P  S+ +   +SVL+
Sbjct: 395 VDGIKYVINFDYPNSSEDYIHRI-GRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 449


>gi|23014822|ref|ZP_00054620.1| COG1198: Primosomal protein N' (replication factor Y) - superfamily
           II helicase [Magnetospirillum magnetotacticum MS-1]
          Length = 733

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 7/109 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++ G  GSGKT V   A+AAA+  G Q +++ P   L+ Q   ++ ++ +   +   +  
Sbjct: 225 VIDGVTGSGKTEVYFEAVAAALGLGKQVLVLLPEIALSAQ---WLDRFRRRFGVKPALWH 281

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHA-LFQDSIQYYKLILVIVDEQH 404
            ++  A RRK    +A G+A I++G  + LF   + +  L L++VDE+H
Sbjct: 282 SDLGDATRRKTWRAVASGEAAIVVGARSGLF---LPFQNLGLIVVDEEH 327


>gi|325567765|ref|ZP_08144376.1| primosome assembly protein PriA [Enterococcus casseliflavus ATCC
           12755]
 gi|325158538|gb|EGC70685.1| primosome assembly protein PriA [Enterococcus casseliflavus ATCC
           12755]
          Length = 800

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 5/144 (3%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           + +P    + Q +A+  I      +     +L+G  GSGKT V L A+A  ++ G  A++
Sbjct: 257 KTVPLELNEEQAAAVAQITACADNQEAQTFLLEGITGSGKTEVYLQAIAQLLKKGKTAIM 316

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   L  Q    ++++       V ++   + Q  +     +I  G+A +++G  +  
Sbjct: 317 LVPEIALTPQ---MVERFKSRLGDAVAVLHSGLSQGEKYDEWRKIERGEAQVVVGARSAI 373

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQ 410
              ++   + ++IVDE+H    +Q
Sbjct: 374 FAPLK--NIGVIIVDEEHEASYKQ 395


>gi|304434516|dbj|BAJ15435.1| VASA-like gene [Mytilus galloprovincialis]
          Length = 745

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 141/330 (42%), Gaps = 55/330 (16%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+ +   +   G            QA+++AP   LA Q +   K++T  T 
Sbjct: 344 TGSGKTAAFLLPVLTGMMNNGLTGSSFSVVQEPQALVVAPTRELAVQIFTDAKRFTHGTM 403

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   ++ G     H+ + +E+     AHI++GT     D I   K+ L     +I+DE  
Sbjct: 404 LRPVVLYGGTSLGHQLRNVEQ----GAHIVVGTPGRLIDVIGKGKVSLEKLKYLILDEAD 459

Query: 405 R-----FGVQQRLKLTQKATAP-----HVLLMTATPIP---RTLVLTSLGDIDISKITEK 451
           R     FG + + K+  +  AP       L+ +AT  P   + L    L D     +   
Sbjct: 460 RMLDMGFGPEIK-KIVHELGAPPKEQRQTLMFSAT-FPEEIQRLAAEFLNDYLFLTVGRV 517

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                 +   +  + R D+  ++L  +LSE      +   +E+K+ ++F +    + S  
Sbjct: 518 GGACTDVAQYVHEVPR-DQKRQKLCDILSESGTDKTLV-FVEQKRNADFLAT---YLSQS 572

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
              T+SI   HG     ++E  +  FK G   +L+AT+V   G+D     I ++++  ++
Sbjct: 573 GFPTTSI---HGDRLQQEREEALRDFKTGRAPILVATSVAARGLD-----IPLVKHVINY 624

Query: 572 GLAQ-----LHQLRGRVGRGEEISSCILLY 596
            L Q     +H++ GR GR   +      Y
Sbjct: 625 DLPQSIDEYVHRI-GRTGRCGNVGKSTSFY 653


>gi|296201834|ref|XP_002748196.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 3
           [Callithrix jacchus]
          Length = 544

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 126/314 (40%), Gaps = 47/314 (14%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER       I I T 
Sbjct: 100 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 155

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF---GVQ------------QRLKLTQKATAPHV 423
               D ++  K  L     +++DE  R    G +             R  L   AT P  
Sbjct: 156 GRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 215

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII--PINRIDEVIERLKVVLSE 481
           +   A    +  +  ++G +++S      A    ++ V +   + + +++I  ++ ++SE
Sbjct: 216 VRQLAEDFLKDYIHINIGALELS------ANHNILQIVDVCHDVEKDEKLIRLMEEIMSE 269

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
                      +E K   F     R + L             IHG  S  +++ V++ FK
Sbjct: 270 -----------KENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 318

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    + P
Sbjct: 319 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTFFTP 377

Query: 599 PLSKNSYTRLSVLK 612
              K     +SVL+
Sbjct: 378 NNIKQVSDLISVLR 391


>gi|265984119|ref|ZP_06096854.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|264662711|gb|EEZ32972.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 462

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 89  RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 144

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 145 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 196

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 197 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 244

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 245 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 304

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 305 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 363


>gi|261218608|ref|ZP_05932889.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261321895|ref|ZP_05961092.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|260923697|gb|EEX90265.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261294585|gb|EEX98081.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
          Length = 462

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 89  RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 144

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 145 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 196

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 197 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 244

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 245 RRLLSAMLTDADMRSVIVFTRTKHGADTVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 304

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 305 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 363


>gi|225712874|gb|ACO12283.1| Eukaryotic initiation factor 4A-II [Lepeophtheirus salmonis]
 gi|290561827|gb|ADD38311.1| Eukaryotic initiation factor 4A-II [Lepeophtheirus salmonis]
          Length = 413

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 125/304 (41%), Gaps = 68/304 (22%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LAQQ  + +       +    
Sbjct: 81  IAQAQSGTGKTATFSIAILQKIDISMNRTQALILAPTRELAQQIQKVVLSLGDFLKATCY 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G    +   +ALE   HG  HI++GT     D I    L        +L   DE   
Sbjct: 141 ACIGGRSISSDIRALE---HG-PHIVVGTPGRVFDMITREHLRTENIKMFVLDEADEMLS 196

Query: 406 FGVQQRL-----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            G ++++      L Q      V+LM+AT +P           D+  +T K   R PI+ 
Sbjct: 197 RGFKEQIYDVFRHLNQDI---QVVLMSAT-MPD----------DVLDVT-KRFMRDPIRI 241

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH--------- 511
           ++           R + +  EG   +++  + EE K S    + E               
Sbjct: 242 LV-----------RKEELTLEGILQFYVFVEKEEWKLSTLCDLYETLTITQAVIFCNTRR 290

Query: 512 -----------EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
                      +HFT  ++ +HG MS  ++E +M  F++G+ ++LI T ++  GIDV   
Sbjct: 291 KVCWLTEKMGLKHFT--VSSMHGEMSQEEREVIMREFRSGSSRVLITTDLLARGIDVQQI 348

Query: 561 SIII 564
           S++I
Sbjct: 349 SLVI 352


>gi|194388512|dbj|BAG60224.1| unnamed protein product [Homo sapiens]
          Length = 544

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 126/314 (40%), Gaps = 47/314 (14%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER       I I T 
Sbjct: 100 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 155

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF---GVQ------------QRLKLTQKATAPHV 423
               D ++  K  L     +++DE  R    G +             R  L   AT P  
Sbjct: 156 GRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 215

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII--PINRIDEVIERLKVVLSE 481
           +   A    +  +  ++G +++S      A    ++ V +   + + +++I  ++ ++SE
Sbjct: 216 VRQLAEDFLKDYIHINIGALELS------ANHNILQIVDVCHDVEKDEKLIRLMEEIMSE 269

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
                      +E K   F     R + L             IHG  S  +++ V++ FK
Sbjct: 270 -----------KENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 318

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    + P
Sbjct: 319 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTFFTP 377

Query: 599 PLSKNSYTRLSVLK 612
              K     +SVL+
Sbjct: 378 NNIKQVSDLISVLR 391


>gi|160945221|ref|ZP_02092447.1| hypothetical protein FAEPRAM212_02740 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442952|gb|EDP19957.1| hypothetical protein FAEPRAM212_02740 [Faecalibacterium prausnitzii
           M21/2]
          Length = 753

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 90/207 (43%), Gaps = 14/207 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           LRN P + T  Q++A   +L  +        +L G  GSGKTLV L  ++  +E G +A+
Sbjct: 205 LRNDPITLTGQQQAAYDTLLPKLEDTAPHSALLYGVTGSGKTLVFLKLISRCLELGRKAL 264

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P I +  Q       ++ +     V +    +    R    + I  G A I++GT +
Sbjct: 265 VLVPEISLTPQMILRLKGQFGRR----VAVQHSALNHTERLLQWQMIQDGGADIVVGTRS 320

Query: 385 LFQDSIQYYKLILVIVDEQH--------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
                ++   LI++  +++H        R+   +  +         +LL +ATP   +  
Sbjct: 321 AVFSPLENIGLIIIDEEQEHTYRSESAPRYSAHEVARQRAAENGALLLLASATPSTESFY 380

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVII 463
               G   + ++T++  G  P+ +V I
Sbjct: 381 AAQNGRTQLVRLTKRYGG-NPLPSVQI 406


>gi|164424171|ref|XP_962960.2| ATP-dependent RNA helicase dbp-2 [Neurospora crassa OR74A]
 gi|157070404|gb|EAA33724.2| ATP-dependent RNA helicase dbp-2 [Neurospora crassa OR74A]
          Length = 546

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 146/344 (42%), Gaps = 49/344 (14%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +     + A        G   +I+AP   LA Q  + I K+ ++++I 
Sbjct: 160 AETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIR 219

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF 406
              + G +P+  + + L R       + I T     D ++  K  L     +++DE  R 
Sbjct: 220 NTCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRM 275

Query: 407 ---GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KI 448
              G + +++            L   AT P  +   A       +  ++G +D++   +I
Sbjct: 276 LDMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRNLAADFLTDFIQVNIGSMDLAANHRI 335

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           T+       I  V+    + D +I+ L+ ++   +    I      K+ ++    + RF 
Sbjct: 336 TQ-------IVEVVSESEKRDRMIKHLEKIMEGRENQNKILIFTGTKRVADD---ITRF- 384

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L +    +++I HG     +++ V+D FK G   +++AT V   GIDV + + ++  + 
Sbjct: 385 -LRQDGWPALSI-HGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDY 442

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +     +H++ GR GR     + I  +    SK +   + VL+
Sbjct: 443 PNNSEDYIHRI-GRTGRAGAKGTAITFFTTDNSKQARELVGVLQ 485


>gi|88658546|ref|YP_507299.1| primosomal protein N' [Ehrlichia chaffeensis str. Arkansas]
 gi|88600003|gb|ABD45472.1| primosomal protein N' [Ehrlichia chaffeensis str. Arkansas]
          Length = 658

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 10/146 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           +L G+ GSGKT V    +   +  ++  QA+I+ P  +L  Q  + IK Y  ++   VE 
Sbjct: 152 VLDGETGSGKTEVYCEVIRELIKRDSTAQALILLPEIVLTLQLIKRIKHYF-DSYYPVEW 210

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
              N+   +R++    IA+GQ+ I+IG   ALF   + Y  L ++IVDE+H    +Q   
Sbjct: 211 -HSNLTLKNRKEYWLSIAYGQSLIVIGARSALF---LPYKNLKMIIVDEEHDSSFKQECG 266

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTS 439
           +   A    ++L     IP  ++L+S
Sbjct: 267 VLYNARDMSIVLAKNLDIP--IILSS 290


>gi|261325143|ref|ZP_05964340.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261752356|ref|ZP_05996065.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261301123|gb|EEY04620.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261742109|gb|EEY30035.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
          Length = 462

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 89  RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 144

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 145 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 196

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 197 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------TTASEITQVVHPVPTKEK 244

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 245 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 304

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 305 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 363


>gi|166154120|ref|YP_001654238.1| primosome assembly protein PriA [Chlamydia trachomatis 434/Bu]
 gi|301335358|ref|ZP_07223602.1| primosome assembly protein PriA [Chlamydia trachomatis L2tet1]
 gi|165930108|emb|CAP03591.1| primosomal protein N' [Chlamydia trachomatis 434/Bu]
          Length = 753

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 18/211 (8%)

Query: 269 IPFSPTKSQE--SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           +P +PT +QE   AI  I Q +  +     +L G  GSGKT V L  +  A   G   ++
Sbjct: 208 LPETPTLNQEQLDAINTISQSLVAEQFQTCLLFGVTGSGKTEVYLQVIRKARALGKSVIL 267

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   L  Q   F K +  +    V ++   +  + R +   + + G  +IIIG  +  
Sbjct: 268 LVPEVALTIQTLSFFKMHFGSE---VGVLHYKLSDSERTQTWHKASRGLINIIIGPRSAI 324

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATPIPRTL 435
              IQ   L L+IVDE+H    +Q              +  K T   V+L +ATP   + 
Sbjct: 325 FCPIQ--NLGLIIVDEEHDSAYKQSDLPPFYQARDVAVMRGKMTNATVILGSATPSLESY 382

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                    +S ++++ +   P K  +I +N
Sbjct: 383 TNALSKKYTLSVLSKRASTSTPTKVFLIDMN 413


>gi|162451805|ref|YP_001614172.1| hypothetical protein sce3532 [Sorangium cellulosum 'So ce 56']
 gi|161162387|emb|CAN93692.1| deaD2 [Sorangium cellulosum 'So ce 56']
          Length = 478

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 145/346 (41%), Gaps = 46/346 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV-ALIAMAAAVEAGG------QA 324
           +PT  Q+ AI  IL+     N +L   Q   G+GKT   AL  +    ++GG      + 
Sbjct: 23  APTPIQQQAIPPILE----GNDLLGCAQ--TGTGKTAAFALPILQRLAQSGGPRQGGLRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E    Y +N  +   ++ G + Q  + +AL R       +++ T  
Sbjct: 77  LVLTPTRELAAQVAESFTTYGKNLGLRTAVVFGGVGQRPQMEALRR----GVDVLVATPG 132

Query: 385 LFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP---RTLV 436
              D        + +L  +++DE  R      L +        VL M    +P   +TL+
Sbjct: 133 RLLDLCSQGIAPFGRLDTLVLDEADRM-----LDMGFIHDIRRVLAM----LPERRQTLL 183

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE-- 494
            ++    DI K+      R P++  +  I    E I++  V +    K   +   +++  
Sbjct: 184 FSATMPPDILKLANSIL-RSPVRVEVARIATTAENIDQRVVFVERSDKRAMLEHVLKDPA 242

Query: 495 -KKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            ++   F       N + +  + +      IHG  S   +E  + SFK GT  +L+AT +
Sbjct: 243 LRRAIVFTRTKHGANRVVQQLSRARIEAVAIHGNKSQGARERALASFKQGTTSVLVATDI 302

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
              GID+ D S +I  +  +   + +H++ GR  R    G  +S C
Sbjct: 303 AARGIDIDDISHVINYDLPNIPESYVHRI-GRTARAGASGVALSFC 347


>gi|322806015|emb|CBZ03582.1| ATP-dependent RNA helicase YfmL [Clostridium botulinum H04402 065]
          Length = 421

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 158/336 (47%), Gaps = 46/336 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT+ Q  AI      ++ +N+ + I Q + G+GKTL  L+ +   +       QA+I+AP
Sbjct: 26  PTEIQAKAI-----PLAMENKDI-IGQSETGTGKTLAYLLPIFEKITTEKREMQAIILAP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q    IK  + N+ + V+ +   + +A+ ++ +E++   + HII+G+     + 
Sbjct: 80  THELAMQINNEIKNISSNSNMDVKSM-AIIGEANIKRQIEKLKE-KPHIIVGSPGRILEL 137

Query: 390 IQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTATPIPRTLVLTS 439
           I+  K+       +++DE  +   +  LK+ ++          ++L +AT    TL +  
Sbjct: 138 IKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLMLFSATITESTLNIAK 197

Query: 440 --LGDIDISKITEKPAGRKPIKTVIIP---INRIDEVIERLKVVLSEGKKAYWICPQIEE 494
             + D ++ K+ EK    + IK + I      RI E++ +L +  +  K+A     + EE
Sbjct: 198 DLMKDSEVVKVKEKNTVNENIKHLYITGEHRERI-EILRKL-IAATNPKRAIVFINRNEE 255

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            + +  +        L  H   +  I +G      ++  ++ F+ G  ++L+++ +   G
Sbjct: 256 IELTTLK--------LQYHKIKAYGI-YGAAEKEQRKKALEDFRLGKVQILVSSDLSARG 306

Query: 555 IDVVDASII----IIENAEHFGLAQLHQLRGRVGRG 586
           +DV D + I    + EN + +    LH++ GR GR 
Sbjct: 307 LDVKDVTHIFNLDLPENPKEY----LHRV-GRTGRA 337


>gi|58271014|ref|XP_572663.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|74683379|sp|Q5KBP5|DBP5_CRYNE RecName: Full=ATP-dependent RNA helicase DBP5
 gi|57228922|gb|AAW45356.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 546

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 155/372 (41%), Gaps = 66/372 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+K QE A+  +L   S   R L I Q   G+GKT    + M + V+      QA+ +AP
Sbjct: 171 PSKIQEKALPLLL---SNPPRNL-IGQSQSGTGKTAAFTLNMLSRVDPTIPTPQAICIAP 226

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E I +  Q TQ+   +    +P +  R +  RI      I+IGT     D 
Sbjct: 227 SRELARQIQEVIDQIGQFTQVGTFLA---IPGSWSRNS--RI---DKQILIGTPGTLVDM 278

Query: 390 IQYYKLIL-------VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           +     IL       +++DE      QQ L   Q      +L     P  + ++ ++  +
Sbjct: 279 LMRGSRILDPRMIRVLVLDEADELIAQQGLG-EQTFRIKQLL----PPNVQNVLFSATFN 333

Query: 443 IDISKITEK--PAGRK-----------PIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            D+ +  ++  P   K            I+ + +  +  D+  E L         A + C
Sbjct: 334 DDVQEFADRFAPEANKIFLRKEDITVDAIRQLYLECDSEDQKYEALS--------ALYDC 385

Query: 490 PQIEE-----KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             I +     K++     + ER  S   H   ++A +HG     ++++++D F+NG  K+
Sbjct: 386 LVIGQSIVFCKRKVTADHIAERLIS-EGH---AVASLHGDKLSQERDAILDGFRNGETKV 441

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQ--------LHQLRGRVGRGEEISSCILLY 596
           LI T VI  GID+   ++++  +    G           +H++ GR GR       ++  
Sbjct: 442 LITTNVIARGIDIPAVNMVVNYDVPDLGPGGNGPDIETYIHRI-GRTGRFGRKGCSVIFT 500

Query: 597 HPPLSKNSYTRL 608
           H   SK+   R+
Sbjct: 501 HDYRSKSDVERI 512


>gi|116191655|ref|XP_001221640.1| hypothetical protein CHGG_05545 [Chaetomium globosum CBS 148.51]
 gi|118575171|sp|Q2H720|DBP2_CHAGB RecName: Full=ATP-dependent RNA helicase DBP2
 gi|88181458|gb|EAQ88926.1| hypothetical protein CHGG_05545 [Chaetomium globosum CBS 148.51]
          Length = 562

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 148/343 (43%), Gaps = 49/343 (14%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +++AP   LA Q  + I K+ ++++I  
Sbjct: 181 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRN 240

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR-- 405
             + G +P+  + + L R       + I T     D ++       ++  +++DE  R  
Sbjct: 241 TCVYGGVPKGPQTRDLSR----GVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRML 296

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
              F  Q R  + Q           AT P  +   A+      +  ++G +D++   +IT
Sbjct: 297 DMGFEPQIRKIIGQIRPDRQTCMWSATWPKEVRALASDFLTDFIQVNIGSMDLAANHRIT 356

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +       +  V+    + D++I+ L+ ++ + +    I      K+ ++    + RF  
Sbjct: 357 Q-------VVEVVNESEKRDKMIKHLEKIMEDKESQNKILIFTGTKRVAD---EITRF-- 404

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +    +++I HG     +++ V+D FK G   +++AT V   GIDV + + ++  +  
Sbjct: 405 LRQDGWPALSI-HGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYP 463

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     +H++ GR GR     + I  +    SK +   + VL+
Sbjct: 464 NNSEDYIHRI-GRTGRAGAKGTAITFFTTDNSKQARDLVGVLQ 505


>gi|257877733|ref|ZP_05657386.1| primosomal protein N [Enterococcus casseliflavus EC20]
 gi|257811899|gb|EEV40719.1| primosomal protein N [Enterococcus casseliflavus EC20]
          Length = 800

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 5/144 (3%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           + +P    + Q +A+  I      +     +L+G  GSGKT V L A+A  ++ G  A++
Sbjct: 257 KTVPLELNEEQAAAVAQITACADNQEAQTFLLEGITGSGKTEVYLQAIAQLLKQGKTAIM 316

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   L  Q    ++++       V ++   + Q  +     +I  G+A +++G  +  
Sbjct: 317 LVPEIALTPQ---MVERFKSRLGDAVAVLHSGLSQGEKYDEWRKIERGEAQVVVGARSAI 373

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQ 410
              ++   + ++IVDE+H    +Q
Sbjct: 374 FAPLK--NIGVIIVDEEHEASYKQ 395


>gi|255325662|ref|ZP_05366759.1| ATP-dependent RNA helicase [Corynebacterium tuberculostearicum
           SK141]
 gi|255297272|gb|EET76592.1| ATP-dependent RNA helicase [Corynebacterium tuberculostearicum
           SK141]
          Length = 432

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 150/350 (42%), Gaps = 63/350 (18%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKT-------LVALIAMAAAVEAGGQAVIMAP 329
           Q++AI D L   + K+ + R   G  GSGKT       L  L    A+  A  +A+I+AP
Sbjct: 29  QKAAIPDAL---AGKDVLGR---GPTGSGKTYTFGLPMLARLAGTGASKPAHPRALILAP 82

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q ++ + +      + V  + G +   H  ++L R       +++ T    QD 
Sbjct: 83  TRELATQIHQRLDEPAATLGLRVLAVVGGVNINHHIRSLAR----PVDVLVATPGRAQDL 138

Query: 390 IQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTSLGDI 443
           I   KL L  V     DE  +      L   +K       L+  TP+  + L+ ++  D 
Sbjct: 139 IDQGKLHLDAVQITALDEADQMADMGFLPQVRK-------LLRLTPVQGQRLLFSATLDG 191

Query: 444 DISKITEK----PA--GRKPIKTVIIPINR----IDEVIERLKVVLS----EGKKAYWIC 489
           D++K+ E+    P      P++  +  ++     + E   R +VVL     +GK   ++ 
Sbjct: 192 DVNKLVEQFLHDPVVHSTAPVQAAVDSMSHHLFFVGERTARNEVVLRIAARQGKTIMFMR 251

Query: 490 PQ--IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +  ++ + +   RS +  +             +HG      +   ++ F +G+  +L+A
Sbjct: 252 TKHGVDRQVKKLRRSGINAYP------------LHGDKGQGARTRAIEGFADGSIPVLVA 299

Query: 548 TTVIEVGIDVVDASIIIIEN--AEHFGLAQLHQLRGRVGRGEEISSCILL 595
           T +   GID+ D S+++  +  AEH   A LH+  GR  RG    + I L
Sbjct: 300 TDIAARGIDIADVSLVVHADPPAEHK--AYLHRA-GRTARGGAAGTVITL 346


>gi|254556522|ref|YP_003062939.1| primosomal protein N' [Lactobacillus plantarum JDM1]
 gi|254045449|gb|ACT62242.1| primosomal protein N' [Lactobacillus plantarum JDM1]
          Length = 805

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+ A+  I Q + Q      +L+G  GSGKT V L +MAAA+  G  A+++ P   L  Q
Sbjct: 273 QQVAVDQITQAVDQAATTTFLLEGVTGSGKTEVYLQSMAAALAQGKTALMLVPEISLTPQ 332

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
             + +K         V ++   +    +     RI  G+A +++G  +     ++   L 
Sbjct: 333 MVQRVKGRFGKA---VAVLHSGLSSGEKYDEWRRIQRGEAQVVVGARSAVFAPLK--NLG 387

Query: 397 LVIVDEQHRFGVQQ 410
           L+++DE+H    +Q
Sbjct: 388 LIVMDEEHESTYKQ 401


>gi|162148995|ref|YP_001603456.1| cold-shock DEAD box protein A [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545253|ref|YP_002277482.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787572|emb|CAP57168.1| putative cold-shock DEAD box protein A [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532930|gb|ACI52867.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 423

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 131/297 (44%), Gaps = 47/297 (15%)

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHG 374
           G + +++AP   LA Q  E  K Y ++ ++   +I G + Q  + +A+ R       A G
Sbjct: 75  GARVLVLAPTRELASQIDESFKSYARHMRLSHTVIFGGVGQGRQVEAMRRGVDVLVAAPG 134

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTAT 429
           +   ++G     Q  I    L ++++DE  R     F    R  + +       LL +AT
Sbjct: 135 RLLDLMG-----QGHIDLSGLEVLVLDEADRMLDMGFVRDIRRIVAELPRDRQTLLFSAT 189

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW-- 487
            +P+++   + G      +   PA       V  P + +D + + +  V ++ K+A    
Sbjct: 190 -MPKSIADLAHG------LLRDPA----TVQVTPPSSTVDRIRQAVMFVDTDNKRAALQL 238

Query: 488 --ICPQIEE-------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
               P++E        K E+N    V  F  L++H   + AI HG  S   +E  M  F+
Sbjct: 239 LVDSPKVERAVVFTLMKHEAN---KVAAF--LNDHGIIAEAI-HGNKSQGARERAMAGFR 292

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL--RGRVGR-GEEISSC 592
           +G  K+L+AT +   GIDV D + +   +  +   + +H++    R GR G  +S C
Sbjct: 293 SGAVKVLVATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSLC 349


>gi|124002116|ref|ZP_01686970.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
 gi|123992582|gb|EAY31927.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
          Length = 571

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 147/345 (42%), Gaps = 47/345 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT  QE AI  +L   +++  +L   Q   G+GKT    + +  +++      QA+I+ P
Sbjct: 25  PTPIQEQAIPYLL---TEETDLLAFAQ--TGTGKTAAFSLPLLESIDPDSKQIQALILCP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q    I+ + +  +I    + G      +  AL+R      HI++GT     D 
Sbjct: 80  TRELCLQIARDIQSFAKFMKIRTTAVYGGASIDKQIDALKR----GVHIVVGTPGRSLDL 135

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP---HVLLMTATPIPRTLVLT 438
           I+  KL        +L   DE    G +Q L     AT P     LL +AT +P+ L+  
Sbjct: 136 IKRKKLKLEQIQWLVLDEADEMLNMGFKQELDAIL-ATTPKEKQTLLFSAT-MPQELIRI 193

Query: 439 SLGDIDISK---ITEKPAGRKPIK---TVIIPINRIDEVIERLKVVLSEGKKAYWI--CP 490
           +   +   K   + ++ +G K +     V+ P +R     + LK +       Y I  C 
Sbjct: 194 AEQYMHQPKKISVGQRNSGAKNVSHEFYVVQPRDRY----QALKRIADINPHIYGIVFCR 249

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
              E K+   + + + +N+           +HG +S   ++ VM  F++   ++L+AT V
Sbjct: 250 TRRETKDIANKLIQDGYNA---------DALHGDLSQAQRDHVMGRFRSRHLQILVATDV 300

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
              G+DV + + +I  N        +H+  GR GR  +    +L+
Sbjct: 301 AARGLDVDEITHVINFNLPDDLEVYIHR-SGRTGRAGKTGVSLLI 344


>gi|209879275|ref|XP_002141078.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556684|gb|EEA06729.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 397

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 135/309 (43%), Gaps = 36/309 (11%)

Query: 297 ILQGDVGSGKTLV----ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           ++Q   G+GKT V    AL       E   QA+I++P   LA+Q  +      +   I V
Sbjct: 64  VVQSQSGTGKTCVFTVGALQLCNRTTERLPQALILSPTRELAEQSQKVCSALGEYLDINV 123

Query: 353 EIITGNMPQAHRRKALER---IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR---F 406
               G        KAL+    I  G    +I  H + Q  +   ++ L+I+DE      F
Sbjct: 124 YCCVGGRKLNDDIKALQSGVTIVSGTPGRVI--HMIEQGYLITRRIRLLILDEADEMLDF 181

Query: 407 GVQQRLKLTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           G ++++    K   P + +++ +  +P  ++  +   +           + P+K ++   
Sbjct: 182 GFKRQVYDIYKYLPPRIQIILVSATLPEEIIEITEKIM-----------KDPLKILVKRD 230

Query: 466 NRIDEVIERLKV-VLSEGKKAYWICPQIEEKKES------NFRSVVERFNS--LHEHFTS 516
           N   E I +  + V  E  K   +C   +    +      N ++ VE  +S  +  HFT 
Sbjct: 231 NLTLEGIRQFYIYVEQEQWKFDTLCDLYDTLTITQSVIFCNKKAKVEWLSSKMIENHFT- 289

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            ++ +HG +S  D+E ++  F+ G  ++LIAT +   GID+   +++I  +        +
Sbjct: 290 -VSFVHGDLSQKDREQILREFRQGKTRVLIATDLWGRGIDIQQINLVINYDIPTNKELYI 348

Query: 577 HQLRGRVGR 585
           H++ GR GR
Sbjct: 349 HRI-GRSGR 356


>gi|149039843|gb|EDL93959.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Rattus norvegicus]
          Length = 940

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 707

Query: 581 GRVGR 585
           GR GR
Sbjct: 708 GRTGR 712


>gi|114566759|ref|YP_753913.1| primosomal protein N [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337694|gb|ABI68542.1| replication restart DNA helicase PriA [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 802

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 22/196 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            + QE+A + I + + + +R   +L G  GSGKT + + ++   +E G +A+++ P   L
Sbjct: 268 NREQEAAFRSIEKSLIKADREEFLLFGVTGSGKTEIYIRSVEKVIEQGRKAIVLVPEIAL 327

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            +          +N    + ++   MP   R     RI  G+  +++GT  A+F    Q 
Sbjct: 328 TRHLLADFSSRIEN----MAVMHSAMPDGERHDEWRRIRQGEVDLVLGTRSAIFAPLDQ- 382

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHV------------LLMTATPIPRTLVLTSL 440
             L L+I+DE+     +Q  + T K  A  V            L+ +ATP   TL     
Sbjct: 383 --LGLIIIDEEQESSYKQ--EETPKYHARDVARKRAELDGAVLLIGSATPSLDTLYRAVK 438

Query: 441 GDIDISKITEKPAGRK 456
           GD+ +  + ++ A  K
Sbjct: 439 GDMKLLTLKQRIAQAK 454


>gi|169603339|ref|XP_001795091.1| hypothetical protein SNOG_04678 [Phaeosphaeria nodorum SN15]
 gi|118593422|sp|Q0UU86|IF4A_PHANO RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|111067318|gb|EAT88438.1| hypothetical protein SNOG_04678 [Phaeosphaeria nodorum SN15]
          Length = 396

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 129/301 (42%), Gaps = 62/301 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    +++     QA+I+AP   LAQQ  + +        +   
Sbjct: 64  IAQAQSGTGKTATFSISTLQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFMDVACH 123

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        KAL+        +++GT     D IQ   L        +L   DE   
Sbjct: 124 ACIGGTSVRDDMKALQ----DGPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLS 179

Query: 406 FGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G  +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P++ +
Sbjct: 180 RGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPVRIL 225

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------R 506
           +    + DE+         EG K ++I  + E+ K      + E               +
Sbjct: 226 V----KKDELT-------LEGIKQFYIAVEKEDWKLDTLSDLYETVTITQAVIFCNTRRK 274

Query: 507 FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++
Sbjct: 275 VDWLTDKLTARDFTVSAMHGDMDQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 334

Query: 564 I 564
           I
Sbjct: 335 I 335


>gi|88858833|ref|ZP_01133474.1| Primosome factor Y, protein n' [Pseudoalteromonas tunicata D2]
 gi|88819059|gb|EAR28873.1| Primosome factor Y, protein n' [Pseudoalteromonas tunicata D2]
          Length = 725

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 20/152 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L A+A  +  G QA+++ P IG+  Q    F +++  NT I+  + 
Sbjct: 217 LLEGITGSGKTEVYLQALADVLAKGKQALVLVPEIGLTPQTVNRFRRRFP-NTPIM--LW 273

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              +  + R +       G   I+IGT  A+F     + +L ++IVDE+H    +Q+  L
Sbjct: 274 HSALTDSERLQTWRYCEQGSCAIVIGTRSAIF---TPFAQLGMIIVDEEHDSSFKQQDSL 330

Query: 415 -----------TQKATAPHVLLMTATPIPRTL 435
                        +A  P ++L TATP   TL
Sbjct: 331 RYHARDLAVYRAHQAKIP-LILGTATPALETL 361


>gi|332559068|ref|ZP_08413390.1| DNA helicase [Rhodobacter sphaeroides WS8N]
 gi|332276780|gb|EGJ22095.1| DNA helicase [Rhodobacter sphaeroides WS8N]
          Length = 1679

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 156/366 (42%), Gaps = 74/366 (20%)

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALI-AMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           + + M+ +N +L IL    G+GK++   + A++   + G   V+++P+  L     + ++
Sbjct: 278 VAEAMAHQN-VLGILP--TGTGKSVCYQVPALSLFDKTGALTVVISPLVALMADQVQGME 334

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII-IGTHALFQDSIQYY----KLIL 397
           +   ++ + V    G +    R+ AL+R+  GQA I+ I    L   S++      ++ L
Sbjct: 335 RAGISSAVTV---NGMLSMPERQDALDRVRLGQAAILLISPEQLRSVSVRAVLAQREVGL 391

Query: 398 VIVDEQH---RFGVQQR----------LKLTQKATAPHVLLMTATPIP----------RT 434
            ++DE H   ++G   R           + +  AT   VL +TAT  P          R 
Sbjct: 392 WVLDEAHCVSKWGHDFRPDYRYIGRFIREFSGDATPAPVLCLTATAKPEVVRDITEHFRE 451

Query: 435 LVLTSLGDIDISKI----------TEKPAGRKPIKTVI---IPINRIDEVIERLKVVLSE 481
            +   LG  D              T K +    I T I   +P +      ER   V+  
Sbjct: 452 RLGVELGLFDGGATRTNLTFSVLATTKESKLGDIMTTISGHLPAD------ERSGAVI-- 503

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                +   + E ++ + F   ++R     EHF       H  ++  DK++V + F+ G 
Sbjct: 504 -----YCATRAETERIAEF---LKRQGIAAEHF-------HAGLTPDDKQTVQERFRVGD 548

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFG-LAQLHQLRGRVGRGEEISSCILLYHPPL 600
            +++ AT    +GID  D  +++  +A+  G L    Q  GR GR  + + C+LLYH   
Sbjct: 549 LRVIAATNAFGMGIDKPDIRLVL--HADIPGSLENYLQEAGRAGRDRQPADCVLLYHSDD 606

Query: 601 SKNSYT 606
            +  +T
Sbjct: 607 VERQFT 612


>gi|325918892|ref|ZP_08180966.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
           35937]
 gi|325534878|gb|EGD06800.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
           35937]
          Length = 636

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 134/322 (41%), Gaps = 41/322 (12%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + +++ A   +   QA+++AP   LA Q  E  +KY +      V  
Sbjct: 52  QAQTGTGKTAAFALPVLSNADLNQLKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLP 111

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF 406
           + G  P A +  AL+R      H+++GT     D +        Q   L+L   DE  R 
Sbjct: 112 VYGGQPYAQQLSALKR----GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRM 167

Query: 407 G----VQQRLK-LTQKATAPHVLLMTAT--PIPRTLVLTSLGD---IDISKITEKPAGRK 456
           G    V+  LK L +K     V L +AT  P  R +  T L D   + I+  T   A  +
Sbjct: 168 GFIDDVEAVLKKLPEKR---QVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIR 224

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
                +  ++++D +   L+V   +G   +           +  ++  E      +    
Sbjct: 225 QRYWWVSGLHKLDALTRILEVEPFDGMIIF-----------ARTKAGTEELAQKLQARGL 273

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           + A I+G M    +E  +   K+G   +L+AT V   G+DV   S ++  +  +   + +
Sbjct: 274 AAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYV 333

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           H++ GR GR       IL   P
Sbjct: 334 HRI-GRTGRAGRNGDAILFVTP 354


>gi|294791790|ref|ZP_06756938.1| primosomal protein N' [Veillonella sp. 6_1_27]
 gi|294457020|gb|EFG25382.1| primosomal protein N' [Veillonella sp. 6_1_27]
          Length = 727

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 19/174 (10%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           NIP   T++Q++    I   M+       +L G  GSGKT + L A A  +     A+I+
Sbjct: 196 NIPL--TEAQQAVYGPIQDAMNSHEHKTFLLHGVTGSGKTQLYLRATARCISQDKTAIIL 253

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALF 386
            P  IL  Q    ++++ +     V +    +    R    ER+    +HIIIG   A+F
Sbjct: 254 VPEIILTDQ---IVRRFVETFGDEVVVFHSKLTVQQRNNNWERLRRKDSHIIIGARSAVF 310

Query: 387 QDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP 430
             +     + L++VDE+H          R+  +       +A    V+L +ATP
Sbjct: 311 APA---EDIGLIVVDEEHDPSYKQEDMVRYHARNVALWRAEAHGCPVILGSATP 361


>gi|265991134|ref|ZP_06103691.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265999460|ref|ZP_05466486.2| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|263001918|gb|EEZ14493.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094098|gb|EEZ18020.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409073|gb|ADZ66138.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis M28]
          Length = 462

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + I+  +++  I   ++ G + +  +   ++RIA G   ++I T
Sbjct: 89  RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQ---IKRIAPG-IDVLIAT 144

Query: 383 HA----LFQDSI----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 L +D +    Q   L+L   D     G    +K   KAT  H    TA      
Sbjct: 145 PGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKAT--HAERQTA------ 196

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++    +I+ + E+   R P++  + P               SE  +     P  E+
Sbjct: 197 -LFSATMPKEIASLAERLL-RDPVRVEVAPQG----------ATASEITQVVHPVPTKEK 244

Query: 495 KK-------ESNFRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++       +++ RSV+    + H         E     +A IHG  S   ++  ++ F+
Sbjct: 245 RRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFR 304

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT ++L+AT +   GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 305 DGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 363


>gi|295672568|ref|XP_002796830.1| ATP-dependent RNA helicase eIF4A [Paracoccidioides brasiliensis
           Pb01]
 gi|226282202|gb|EEH37768.1| ATP-dependent RNA helicase eIF4A [Paracoccidioides brasiliensis
           Pb01]
          Length = 398

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 126/299 (42%), Gaps = 58/299 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    V+      QA+I+AP   LAQQ  + +        I   
Sbjct: 66  IAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECH 125

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDE-----Q 403
              G +      KAL+        +++GT     D IQ   L      + ++DE      
Sbjct: 126 ACIGGISVRDDMKALQE----GPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLS 181

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           H F  Q          +  V+L++AT +P+          D+ ++T K   R P++ ++ 
Sbjct: 182 HGFTEQIYDIFQFLPQSTQVVLLSAT-MPQ----------DVLEVTTKFM-RDPVRILV- 228

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------RFN 508
                    ++ ++ L EG K ++I  + EE K      + E               + +
Sbjct: 229 ---------KKAELTL-EGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVD 278

Query: 509 SLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 279 WLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 337


>gi|170722989|ref|YP_001750677.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169760992|gb|ACA74308.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 452

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 151/357 (42%), Gaps = 62/357 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM--------AAAVEAGGQA 324
           PT  Q +AI   LQ      R LR+     GSGKT   ++ +         A VE   +A
Sbjct: 36  PTPVQAAAIPLALQ-----GRDLRV-TAQTGSGKTAAFVLPLLNRLVDLKGARVEI--RA 87

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LAQQ  + ++ ++Q T I   ++TG      +   L ++      ++IGT  
Sbjct: 88  LILLPTRELAQQTLKQVQLFSQFTYIKAGLVTGGEDFKEQAAMLRKVPD----VLIGTPG 143

Query: 385 LFQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              + +    L L     +I+DE  R     F         +       LL +AT     
Sbjct: 144 RLLEQLNAGNLDLSHVQVMILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGG-- 201

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE--RLKVVLSEGKK-----AYW 487
               +L DI I K+ + P          + +N + ++ E  R +V+ ++  +       W
Sbjct: 202 ---AALRDI-IGKVLKDPEH--------LMLNSVSQLAEGTRQQVITADHDQHKEAIVQW 249

Query: 488 ICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIA---IIHGRMSDIDKESVMDSFKNGT 541
           +    +  K    +N R + +R   ++ H  +      ++HG     D++  ++ FK G+
Sbjct: 250 LLANEKFDKAIIFTNTRVLADR---IYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGS 306

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
            K+L+AT V   G+D+    ++I  +    G   +H++ GR GR G E  +  L+ H
Sbjct: 307 SKVLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRI-GRTGRAGGEGLAISLITH 362


>gi|149244712|ref|XP_001526899.1| eukaryotic initiation factor 4A-12 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032453|sp|A5DWJ1|FAL1_LODEL RecName: Full=ATP-dependent RNA helicase FAL1
 gi|146449293|gb|EDK43549.1| eukaryotic initiation factor 4A-12 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 399

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 133/325 (40%), Gaps = 69/325 (21%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I M   +++     QA++++P   LA Q    IK       I   
Sbjct: 67  IAQAQSGTGKTATFSIGMLEVLDSKSKECQALVLSPTRELATQIQNVIKHLGDYMNIQTY 126

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G          ++R+  GQ  I+ GT     D I+   L        IL   DE   
Sbjct: 127 ACIGGKNVG---TDIKRLQQGQ-QIVSGTPGRVLDVIKRRNLSTRHIKMLILDEADELFT 182

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G ++++    K   P   V++++AT     L +T        K T  P           
Sbjct: 183 KGFKEQIYEIYKHLPPGVQVVVVSATLTHEVLEMTG-------KFTTDP----------- 224

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL------------- 510
               +  +++R +V LS  K+ Y  C    EK++  F ++ + +++L             
Sbjct: 225 ----VKILVKREEVSLSGIKQYYIQC----EKEDWKFDTLCDLYDNLTITQAVIFCNTKI 276

Query: 511 ----------HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
                      ++FT  +  +HG M   +++++M+ F++G  ++LI+T V   GIDV   
Sbjct: 277 KVNWLTDQMRKQNFT--VVAMHGDMKQEERDAIMNDFRSGNSRVLISTDVWARGIDVQQI 334

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGR 585
           S++I  +        +H++ GR GR
Sbjct: 335 SLVINYDLPLDKENYIHRI-GRSGR 358


>gi|20072320|gb|AAH26492.1| Ddx46 protein [Mus musculus]
          Length = 626

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 243 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 301

Query: 581 GRVGR 585
           GR GR
Sbjct: 302 GRTGR 306


>gi|257868124|ref|ZP_05647777.1| primosomal protein N [Enterococcus casseliflavus EC30]
 gi|257874601|ref|ZP_05654254.1| primosomal protein N [Enterococcus casseliflavus EC10]
 gi|257802238|gb|EEV31110.1| primosomal protein N [Enterococcus casseliflavus EC30]
 gi|257808765|gb|EEV37587.1| primosomal protein N [Enterococcus casseliflavus EC10]
          Length = 800

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 5/144 (3%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           + +P    + Q +A+  I      +     +L+G  GSGKT V L A+A  ++ G  A++
Sbjct: 257 KTVPLELNEEQAAAVAQITACADNQEAQTFLLEGITGSGKTEVYLQAIAQLLKQGKTAIM 316

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   L  Q    ++++       V ++   + Q  +     +I  G+A +++G  +  
Sbjct: 317 LVPEIALTPQ---MVERFKSRLGDAVAVLHSGLSQGEKYDEWRKIERGEAQVVVGARSAI 373

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQ 410
              ++   + ++IVDE+H    +Q
Sbjct: 374 FAPLK--NIGVIIVDEEHEASYKQ 395


>gi|171693103|ref|XP_001911476.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946500|emb|CAP73301.1| unnamed protein product [Podospora anserina S mat+]
          Length = 488

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 149/383 (38%), Gaps = 80/383 (20%)

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR-------------------- 296
            EG I +K    + FS +K  E  +    + MS K  +LR                    
Sbjct: 90  AEGGIDRKADEKLTFSTSK--EVTVHPTFESMSLKESLLRGIYAYGYESPSAVQSRAIVQ 147

Query: 297 -------ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQ 346
                  I Q   G+GKT    I+M   ++      QA++++P   LA Q    +     
Sbjct: 148 ICKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGD 207

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVD 401
              +      G        + + ++ +GQ HI+ GT     D I+   L      ++++D
Sbjct: 208 YMNVQCHACIGGTNVG---EDIRKLDYGQ-HIVSGTPGRVADMIRRRHLRTRHIKMLVLD 263

Query: 402 EQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           E       G ++++    +   P   V++++AT     L +T+       K    P    
Sbjct: 264 EADELLNQGFREQIYDVYRYLPPATQVVVVSATLPHDVLTMTT-------KFMTDP---- 312

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVER 506
               V I + R +  +E LK      +K  W    + +  ++          N R  V+ 
Sbjct: 313 ----VRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDW 368

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII- 565
                     +++ +HG M   +++S+M  F+ G  ++LI+T V   GIDV   S++I  
Sbjct: 369 LTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINY 428

Query: 566 ---ENAEHFGLAQLHQLRGRVGR 585
               N E++    +H++ GR GR
Sbjct: 429 DLPSNRENY----IHRI-GRSGR 446


>gi|152990085|ref|YP_001355807.1| primosome assembly protein PriA [Nitratiruptor sp. SB155-2]
 gi|151421946|dbj|BAF69450.1| primosomal replication factor Y [Nitratiruptor sp. SB155-2]
          Length = 610

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 17/151 (11%)

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           K++ + +L GD GSGKT V L  M   V+ G +A+ + P   L  Q    +K+       
Sbjct: 124 KDKGISLLFGDTGSGKTQVYLAWMKEVVQRGKEAIFLMPEIALTPQ---MLKRIEAVFGE 180

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH--RFG 407
            V +    + +  R + L RI  G+  ++ G   ALF   +    L L+IVDE+H   + 
Sbjct: 181 AVALWHSRLSKKKREETLRRIREGKVKVVAGPRSALF---LPLKNLGLIIVDEEHDDSYK 237

Query: 408 VQQRLKLTQKATAPH--------VLLMTATP 430
            Q R ++  +  A +        VLL +ATP
Sbjct: 238 SQSRPRIHARDIAVYMGKTLNIPVLLGSATP 268


>gi|123413907|ref|XP_001304373.1| eukaryotic translation initiation factor [Trichomonas vaginalis G3]
 gi|121885820|gb|EAX91443.1| eukaryotic translation initiation factor, putative [Trichomonas
           vaginalis G3]
          Length = 410

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 147/342 (42%), Gaps = 42/342 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q  AIK I     QK  +L   Q   G+GKT    I +   ++      QA+++AP
Sbjct: 52  PSDIQALAIKPI----CQKRNVLA--QAQSGTGKTGAFSIGVLNRIDTSLVETQALLLAP 105

Query: 330 IGILAQQHYEFIKKYTQNT-QIIVEIITGNMP-QAHRRKALER-----IAHGQAHIIIGT 382
              L  Q Y FIK+ ++    I +E+  G +     +RKA E+        G+A  +I  
Sbjct: 106 TRELVDQIYIFIKQISEKMPNITIEVFKGGLSVTEDQRKAQEKPMVAICTPGRALDLISK 165

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSL 440
             L    +Q +  +L   DE    G ++ +    K   P +   L +AT IP +      
Sbjct: 166 GYLQIGQLQMF--VLDEADEMLSEGFKETVDEICKYLDPEIQTCLFSAT-IPWST----- 217

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               ISKI        P+K ++       E I++  V + E      +   I        
Sbjct: 218 ----ISKIPN--LFDNPVKILVKAEKLTLEGIKQFYVNVGETSNKLSVLLDIYGALNITK 271

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               +N ++ V+   S  E    +++ IH  ++ ++++++M +F+    ++LI+T ++  
Sbjct: 272 AVIFANSKATVDFLKSELEANKFTVSAIHSNLTQVERDTIMKNFRINVSRVLISTDLLAR 331

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQL--RGRVGR-GEEISSC 592
           GIDV   +++I           LH++   GR GR G  I+ C
Sbjct: 332 GIDVQQITLVINFELPTTREKYLHRIGRSGRYGRKGVAINIC 373


>gi|119475471|ref|ZP_01615824.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
 gi|119451674|gb|EAW32907.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
          Length = 459

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 129/305 (42%), Gaps = 30/305 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKK---YTQNTQI 350
           I +   GSGKT    I +   +   + G Q +++ P   L+ Q    I++   Y QN ++
Sbjct: 44  IAKAKTGSGKTAAFGIGLLTKINPRDFGTQTMVICPTRELSTQVATEIRRLARYQQNIKV 103

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR 405
           +V  + G      +  +LE   HG AHI++GT    +D     ++   +L ++++DE  R
Sbjct: 104 VV--LCGGQSIGPQIGSLE---HG-AHIVVGTPGRIKDHLRKKTLSLSRLGILVLDEADR 157

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                   L     +    ++   P  R  +L S    D  K       R P++  +  +
Sbjct: 158 M-------LDMGFYSDIETIIHEMPDDRQTLLFSATYPDKIKTLSSSFQRSPVEISVESV 210

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--FRSVVERFNSLHEHFTS---SIAI 520
              +++ ++L +     + A      +    ES   F + ++    + ++      S   
Sbjct: 211 RGNEKIHQQLFICDKRERLAGLQRLLMNYPIESAVIFCNTIKLVKEVCDYLVDIGISAKA 270

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG +   D++ V+  F N +C LL+AT V   G+D+ D   +I           +H++ 
Sbjct: 271 IHGDLEQRDRDQVLIQFANHSCSLLVATDVAARGLDIEDLPAVINFELPREADVYIHRI- 329

Query: 581 GRVGR 585
           GR GR
Sbjct: 330 GRTGR 334


>gi|326426645|gb|EGD72215.1| DEAD box ATP-dependent RNA helicase [Salpingoeca sp. ATCC 50818]
          Length = 1054

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 152/354 (42%), Gaps = 60/354 (16%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----- 318
           +LR + +  PT  Q  A+  I   MS ++ ML I +   GSGKTL  L+ M   V     
Sbjct: 328 VLRALKYDDPTPIQAQALPVI---MSGRD-MLGIAK--TGSGKTLAFLLPMLRHVLDQRR 381

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  A+I++P   LA Q Y   KK+T++  + +  + G    A +   L+R     
Sbjct: 382 VRQGEGCIALILSPTRELAVQTYTEAKKFTKHLDLRIACVYGGSDIADQIAHLKR----S 437

Query: 376 AHIIIGTHALFQDSIQY--------YKLILVIVDEQHRF---GVQ-QRLKLTQKATAPHV 423
             II+ T     D +           ++  V++DE  R    G + Q +++         
Sbjct: 438 VEIIVCTPGRMIDMLTVNRGKVTNPRRITYVVLDEADRMFDMGFEPQVMRILDNIRPDRQ 497

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKP-----AGRKPIKT-------VIIPINRIDEV 471
            +M +   PR +      ++   KI +KP      GR  +         V+   N+ +++
Sbjct: 498 TVMFSATFPRAM------EVLARKILKKPIEIQVGGRSIVSDTVEQHVLVLEEQNKFNKL 551

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
           +E L +   +G    ++  Q  EK +           +L  H   S+ + HG +S  D++
Sbjct: 552 LELLGIYYVQGSVIVFVHRQ--EKADM-------LLTNLMGHGYMSLPL-HGAVSQEDRQ 601

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S +  FK G  K+LIAT+V   G+DV    +++  +  +     +H+  GR GR
Sbjct: 602 SNIRDFKLGNVKILIATSVAARGLDVKSLKLVVNYDCPNHYEDYVHRC-GRTGR 654


>gi|295085349|emb|CBK66872.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens
           XB1A]
          Length = 374

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 146/347 (42%), Gaps = 51/347 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM--------AAAVEAGGQA 324
           PT  QE AI   L     K  +L   Q   G+GKT    I +         AA   G +A
Sbjct: 24  PTPIQEKAIPPALA----KRDILGCAQ--TGTGKTASFAIPIIQHLQLDKEAARRQGIKA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR----RKALERIAH--GQAHI 378
           +I+ P   LA Q  E I  Y+++T+I   +I G + Q  +    RK ++ +    G+   
Sbjct: 78  LILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDLLRKGIDILVATPGRLLD 137

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPR 433
           ++    +  D+IQY+     ++DE  R    G    +K  L +       L  +AT +P 
Sbjct: 138 LMSQGHIHLDTIQYF-----VLDEADRMLDMGFIHDIKRILPKLPKEKQTLFFSAT-MPD 191

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +++  +           K   + P+K  I P +   + I+++ V   E K+   +   I 
Sbjct: 192 SIISLT-----------KSLLKNPVKIYITPKSSTVDSIKQV-VYFVEKKEKSQLLISIL 239

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIA-------IIHGRMSDIDKESVMDSFKNGTCKLLI 546
            K E     +  R     +     +         IHG  S   ++S + +FK+G  ++++
Sbjct: 240 SKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           AT +   GID+ +  ++I  +        +H++ GR GR   + + +
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRI-GRTGRAGNMGTAL 345


>gi|238750849|ref|ZP_04612347.1| Primosomal protein N' [Yersinia rohdei ATCC 43380]
 gi|238710993|gb|EEQ03213.1| Primosomal protein N' [Yersinia rohdei ATCC 43380]
          Length = 732

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 111/516 (21%), Positives = 201/516 (38%), Gaps = 130/516 (25%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I  + +Q    L  L G  GSGKT V L  +   +  G QA+++ P IG+  Q
Sbjct: 203 QATAVGAIRSEDTQFAAWL--LAGVTGSGKTEVYLSVLENILAQGRQALVLVPEIGLTPQ 260

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
                I ++ +     VE++   +  + R     R  +G+A I+IGT  ALF     + +
Sbjct: 261 T----IARFRERFNAPVEVLHSGLNDSERLAVWLRARNGEAAIVIGTRSALF---TPFAR 313

Query: 395 LILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L ++I+DE+H          R+  +       +     +++ TATP   TL    +G   
Sbjct: 314 LGVIIIDEEHDSSYKQQEGWRYHARDLAVFRAREENIPIVMGTATPALETLHNVQIGKYR 373

Query: 445 ISKITEKPAGRKP-------IKTVIIPINRIDEVIERLK--------VVLSEGKKAY--- 486
              ++++    KP       +K + + +     +++R+K        V+L   ++ Y   
Sbjct: 374 QLTLSKRAGNAKPAVQHLLDLKGLPLKVGLSQPLLKRMKTHLQADNQVILFLNRRGYAPA 433

Query: 487 -------WICPQIEEKKESNFRSVVERFNSLHEHFTSS----------------IAIIHG 523
                  WI    E ++  ++ +  + +  L  H   S                +++  G
Sbjct: 434 LLCHECGWIA---ECQRCDHYYTFHQNYRQLRCHHCDSQRPVPQQCPKCGSTHLVSVGVG 490

Query: 524 R---------------MSDIDKESV---------MDSFKNGTCKLLIATTVIEVGIDVVD 559
                           ++ ID+++          +     G  ++LI T ++  G    D
Sbjct: 491 TEQLENELAPLFPDTPITRIDRDTTSRKGSLEQHLADVHQGGARILIGTQMLAKGHHFPD 550

Query: 560 ASIIII------------ENAEHFGLAQLH-QLRGRVGRGEEISSCILLYHPPLSKNSYT 606
            +++ +             +AE F  AQL+ Q+ GR GR  +    IL  H P     + 
Sbjct: 551 VTLVALLDVDGALFSADFRSAERF--AQLYTQVSGRAGRAGKPGEVILQTHHP----EHP 604

Query: 607 RLSV-LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD------------ 653
            L + L+   D F  A++ L +RK      +        +I + E HD            
Sbjct: 605 LLQILLQQGYDAF--AKQALAERKS-----VFLPPYTSHIIVRSEDHDNQQSALFLQQLR 657

Query: 654 SLLEIA--RKDAKHILTQDPDLTSVRGQSIRILLYL 687
           +LLE +  + DA  I+   P L + RG   R  L L
Sbjct: 658 NLLEASPLKDDALWIMGPVPALQAKRGGRFRWQLLL 693


>gi|325923904|ref|ZP_08185503.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325545614|gb|EGD16869.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 458

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 122/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + ++K      N ++
Sbjct: 43  IAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQVGKQLRKLATGIPNMKL 102

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +V  +TG MP   +  +LE  AH    +++GT    Q+  +   L L     +++DE  R
Sbjct: 103 VV--LTGGMPLGPQLASLE--AH-DPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADR 157

Query: 406 F---GVQQRLKLTQKATAPH--VLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPI 458
               G ++ ++        H   LL +AT   I RTL    L D              PI
Sbjct: 158 MLDMGFEEPIREIASRCDKHRQSLLFSATFPDIIRTLAREILKD--------------PI 203

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEH 513
           +  +   +   E+ ++   V    ++       +    ES     N R  V+      + 
Sbjct: 204 EITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLLRFNPESSVVFCNTRKEVDEVAGSLQE 263

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           F  S   +HG M   D++ V+  F N +C +L+A+ V   G+DV D + ++
Sbjct: 264 FGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLAAVV 314


>gi|308162755|gb|EFO65133.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           P15]
          Length = 391

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 133/307 (43%), Gaps = 35/307 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I M   ++      QA+I++P   LA Q  + +       ++ V 
Sbjct: 61  IAQAQSGTGKTAAFTIGMLQRIDLALKSPQAIILSPTRELALQTLKVVDGIGSRLEVQVA 120

Query: 354 IITGNMPQAHRRKALERIAHGQA-HIIIGTHA-----LFQDSIQYYKLILVIVDEQH--- 404
              G        +  + IA  Q+ H+I+ T       L +  +    + +V++DE     
Sbjct: 121 QCIGGT------QVDDDIAAAQSCHLIVATPGRLLSLLQKKYVTTSNVKMVVLDEADEML 174

Query: 405 -RFGVQQRLKLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPA--GRKPIKT 460
            R   +Q + + +   A   ++L++AT  P  L LT     D   I  K A      I+ 
Sbjct: 175 SRGFTEQIVSIMKFMNADIQIVLVSATLPPEILELTRQFMRDPVSILVKEAELTLDGIRQ 234

Query: 461 VIIPINRI--DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            ++ +      EV+E +  VLS  ++    C  I   KE     + E+  S       ++
Sbjct: 235 YVVDLQDAWKAEVVEDIYKVLSV-QQGVIFCNSIGRVKE-----LAEKLKSAGH----TL 284

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           + IH  +   ++  +M  F++G  ++LIAT +I  GIDV + S++I  +        LH+
Sbjct: 285 SCIHSELDQAERNKIMGEFRSGQTRILIATNIIARGIDVQNVSLVINYDIPREPETYLHR 344

Query: 579 LRGRVGR 585
           + GR GR
Sbjct: 345 I-GRSGR 350


>gi|196004420|ref|XP_002112077.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
 gi|190585976|gb|EDV26044.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
          Length = 633

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 128/333 (38%), Gaps = 49/333 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQA---------VIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKTL   + +   +    ++         +++AP   LA Q     K  + +
Sbjct: 93  IGQARTGTGKTLSFALPITEKLIKKKRSDDKIRPPKVLVLAPTRELAIQITSEFKALSGS 152

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            +++   I G +P A +   L         I+IGT    +D I    L+L     V++DE
Sbjct: 153 LKVVC--IYGGVPYAEQENHLR----NGIDIVIGTPGRIKDHIDRKNLVLSKLKHVVLDE 206

Query: 403 QHRFGVQQRLKLTQ--------KATAPHVLLMTATPIPRTLVLT----SLGDIDISKITE 450
             R        + +        K   P  LL +AT +P+  + T       D  I  +  
Sbjct: 207 VDRMLDMGFCDIVEEILSHAYVKDRHPQTLLFSAT-MPKWALKTIDKYMKSDKKIVDLIG 265

Query: 451 KPAGRKPI----KTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           K A R       K +  P + R   + + +KV   +  +     P  +E  E    SV++
Sbjct: 266 KDALRTSTTVEHKVISCPYHERAATIGDLVKVYGGDHARTIIFSPTKKEANELALSSVLK 325

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           +           + ++HG +    +E  +  F+ G    L+AT V   G+D+ +  ++I 
Sbjct: 326 Q----------EVQVLHGDIQQAQREVTLKGFREGNFPCLVATDVAARGLDIPEVDLVIQ 375

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                     +H+  GR GR      CI  Y P
Sbjct: 376 CEPPKDADTYIHR-SGRTGRANRTGICITFYKP 407


>gi|167840691|ref|ZP_02467375.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis MSMB43]
          Length = 458

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 137/309 (44%), Gaps = 32/309 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + +++  +  + + V
Sbjct: 42  IAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQVAQEVRRLARAEENVKV 101

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G  P   + ++LE   HG AHII+GT     D +    L L     +++DE  R  
Sbjct: 102 LTLCGGTPMRPQTQSLE---HG-AHIIVGTPGRIMDHLDRGTLTLGALNTLVLDEADRML 157

Query: 407 --GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIK 459
             G    +    +   P    LL +AT  P  +   S   L +    K+ E+    K I+
Sbjct: 158 DMGFFDDIAKVARQCPPARQTLLFSAT-YPDGIAKLSQQFLRNPKEVKLDERHDDSK-IR 215

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
                +   DE +  + ++L+  +    I     +++  +   V+ R    H     ++A
Sbjct: 216 QRFYEVTE-DERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLLDVL-RAQGFH-----ALA 268

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++
Sbjct: 269 L-HGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI 327

Query: 580 RGRVGRGEE 588
            GR GR ++
Sbjct: 328 -GRTGRADQ 335


>gi|50305865|ref|XP_452893.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660558|sp|Q6CT46|DBP3_KLULA RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49642026|emb|CAH01744.1| KLLA0C15499p [Kluyveromyces lactis]
          Length = 504

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 143/324 (44%), Gaps = 42/324 (12%)

Query: 300 GDVGSGKTLV-ALIAMAAAVEAGGQA-----VIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + GSGKT    + A+   V +G ++     ++++P   LA Q Y+ +   T    +   
Sbjct: 136 AETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSC 195

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G +P+  +R+ L R     + +++ T     D I+   + L     +++DE  R   
Sbjct: 196 CVYGGVPKDQQREDLRR-----SQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLE 250

Query: 407 -GVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            G ++ +K      ++T+   L+ TAT  P+ +    L    +S+  +   G +   +  
Sbjct: 251 KGFEEDIKKIIRQTRSTSRQTLMFTAT-WPKEV--RELASSFMSEPVKVSIGNRDELSAN 307

Query: 463 IPINRIDEVIE--RLKVVLSEGKKAYWICPQIEEK--------KESNFRSVVERFNSLHE 512
             I +I EV++  R +  L E  K Y   P   +K        KE+   S VER N  + 
Sbjct: 308 KRITQIVEVVDPFRKEKKLLELLKKYHSGPTKNDKVLIFALYKKEA---SRVER-NLKYN 363

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
            +   +A IHG +S   +   ++ FK G C LL+AT V   G+D+ +   +I        
Sbjct: 364 GY--DVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTV 421

Query: 573 LAQLHQLRGRVGRGEEISSCILLY 596
              +H++ GR GR  +  +   L+
Sbjct: 422 EDYVHRI-GRTGRAGQYGTAHTLF 444


>gi|237836123|ref|XP_002367359.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii
           ME49]
 gi|14595111|emb|CAC43441.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii]
 gi|211965023|gb|EEB00219.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii
           ME49]
 gi|221484990|gb|EEE23280.1| conserved hypothetical protein [Toxoplasma gondii GT1]
 gi|221505957|gb|EEE31592.1| eukaryotic translation initiation factor 4A, putative [Toxoplasma
           gondii VEG]
          Length = 412

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 145/351 (41%), Gaps = 49/351 (13%)

Query: 260 KIAQKILRNIPFS-----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           K+ + +LR I +S     P+  Q+  IK IL      +R   I Q   G+GKT    IA 
Sbjct: 45  KLNESLLRGI-YSYGFEKPSAIQQRGIKPIL------DRHDTIGQAQSGTGKTATFAIAA 97

Query: 315 AAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
              ++      Q +I+AP   LAQQ  + +       Q+      G       R  + ++
Sbjct: 98  LQLIDYNINNCQVLILAPTRELAQQIQKVVLALGDYLQVRCHACVGGTVV---RDDIAKL 154

Query: 372 AHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAP-- 421
             G  H+++GT     D ++   L      L I+DE       G + ++    K   P  
Sbjct: 155 KAG-VHMVVGTPGRVHDMMEKRHLRVDDMKLFIMDEADEMLSRGFKSQIYDVFKKLPPDV 213

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS- 480
            V L +AT +P+          DI ++T K   R P + ++       E I +  V +  
Sbjct: 214 QVALFSAT-MPQ----------DILELTTKFM-RDPKRILVKNDELTLEGIRQFYVAVEK 261

Query: 481 EGKKAYWICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           E  K   +C   E           N R  V+   S       +++ +HG M    +E +M
Sbjct: 262 EDWKLETLCDLYETLTITQAIIYCNTRRKVDFLTSKMSERDFTVSSMHGDMDQKSREMIM 321

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
             F++G+ ++LI T ++  GIDV   S++I  +        +H++ GR GR
Sbjct: 322 REFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPATKENYIHRI-GRSGR 371


>gi|222148785|ref|YP_002549742.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
 gi|221735771|gb|ACM36734.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
          Length = 516

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 146/354 (41%), Gaps = 52/354 (14%)

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKTLVALIAM 314
           ++QK+L  +  +    PT  Q  AI   L        M R + G    G+GKT   ++ M
Sbjct: 1   MSQKVLSAVTDAGYTVPTPIQAGAIPPAL--------MRRDICGIAQTGTGKTASFVLPM 52

Query: 315 AAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
              +E G       + +IM P   LA Q  E  +KY +N ++ + ++ G +    + + L
Sbjct: 53  LTLLEKGRARARMPRTLIMEPTRELAAQVAENFEKYGKNHKLNIALLIGGVSFDEQDRKL 112

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
           ER     A ++I T     D  +  KL++     +++DE  R        +      P +
Sbjct: 113 ER----GADVLICTPGRLLDHCERGKLLMTGVEILVIDEADR--------MLDMGFIPDI 160

Query: 424 LLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             + A  IP   +TL  ++    +I K+ +K         V  P +    V +RL    +
Sbjct: 161 ERI-AKLIPFTRQTLFFSATMPPEIQKLADKFLQNPERIEVAPPSSTAKTVTQRLVACQN 219

Query: 481 EGKKAYWICPQIEEKKE---------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
           +  +       I   ++         +  + V + F SL  H   S+  +HG M    + 
Sbjct: 220 KDYEKRSTLRDIIRAQDDLKNAIIFCNRKKDVADLFRSLERH-GFSVGALHGDMDQRSRT 278

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +++  FK+    LL+A+ V   G+D+ D S +   +        +H++ GR GR
Sbjct: 279 NMLAGFKDNQITLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGR 331


>gi|254457791|ref|ZP_05071219.1| dead/deah box helicase domain protein [Campylobacterales bacterium
           GD 1]
 gi|207086583|gb|EDZ63867.1| dead/deah box helicase domain protein [Campylobacterales bacterium
           GD 1]
          Length = 453

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 134/336 (39%), Gaps = 52/336 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQ---HYEFIKKYTQNTQI 350
           I Q   GSGKT    I +   ++      Q++I+ P   LA Q       + + T N +I
Sbjct: 42  IAQAKTGSGKTAAFGIGLLTKLQVKKFRVQSLILCPTRELADQVAKELRMLARATHNVKI 101

Query: 351 IVEIITGNM---PQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDE 402
           +   + G     PQ      L  ++HG AHII+GT       L + ++    L ++++DE
Sbjct: 102 LT--LCGGAAFGPQ------LGSLSHG-AHIIVGTPGRILKHLKKATLSLEDLEMLVLDE 152

Query: 403 QHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
             R         + + L  T+K      LL +AT     +        DISK  +  A  
Sbjct: 153 ADRMLDMGFSEEINEVLSFTKKR--KQTLLFSATYTDEIM--------DISKNLQHEA-- 200

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHE 512
             +          + + ER   V ++ +K   I   +   K  N   F +       L E
Sbjct: 201 --VSVKTTSTETANNITERFYEV-NDHQKLDTIVNILSNFKPENVIIFTNTKIEAKELAE 257

Query: 513 HFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           +          IHG +   ++  V+  F N +C +LIAT V   G+D+ + S++I  +  
Sbjct: 258 NLLKKKIDALAIHGDLEQYERNDVLVQFANRSCPVLIATDVAARGLDIKEMSMVINYDLP 317

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           H      H++ GR GR  +      L+    +  +Y
Sbjct: 318 HGDETYTHRI-GRTGRAGQDGLAFTLFSQYEADKAY 352


>gi|254417807|ref|ZP_05031531.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
 gi|196183984|gb|EDX78960.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
          Length = 510

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 139/344 (40%), Gaps = 45/344 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA--------AAVEAGGQA 324
           PT  QE AI D++Q       +L I Q   G+GKT    + +         A      + 
Sbjct: 39  PTPIQEKAIPDVMQGKD----LLGIAQ--TGTGKTAAFALPILHRLAENRIAPKPRTTRV 92

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q  +  K Y  +    V +I G +    + +AL++       I++    
Sbjct: 93  LVLSPTRELATQIGDSFKAYGAHLGFRVAVIFGGVKYGAQERALQQ----GLDILVAAPG 148

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLT 438
              D IQ   L L     +++DE       Q L L      P   +++  P  R  L  +
Sbjct: 149 RLLDHIQQKNLDLSSTEILVLDE-----ADQMLDLG--FIKPIRQIVSRIPAKRQNLFFS 201

Query: 439 SLGDIDISKITEKPAG---RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           +    +I K+    AG   + P+K  + P +   + I +  V + +G+K   +     + 
Sbjct: 202 ATMPTEIGKL----AGELLKDPVKVQVTPQSTTVQRISQSVVHVEQGRKRALLTEMFSDP 257

Query: 496 KESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           + +        +   ++  +  E        IHG  S   +E  +D+FK G  ++L+AT 
Sbjct: 258 EYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLRVLVATD 317

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +   GIDV   S ++     H   A +H++ GR  R     + I
Sbjct: 318 IAARGIDVDGVSHVVNFELPHVPEAYVHRI-GRTARAGADGTAI 360


>gi|76800822|ref|YP_325830.1| Hef nuclease [Natronomonas pharaonis DSM 2160]
 gi|76556687|emb|CAI48259.1| probable nuclease domain protein/ probable ATP-dependent helicase
           [Natronomonas pharaonis DSM 2160]
          Length = 845

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 30/179 (16%)

Query: 510 LHEHFTSSIAIIHGR------MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           L EHF +   +  G       M+  +++  +D+F++G  ++L++T+V E G+DV D  ++
Sbjct: 392 LGEHFETRRFVGQGDKDGSDGMTQTEQKETLDAFRSGEFEVLVSTSVAEEGLDVPDVDLV 451

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-------LSKNSYTRLSVLKNTED 616
           +       G+  + Q +GR GR  +    +LL           +S+N   R+        
Sbjct: 452 LFYEPVPKGIRSI-QRKGRTGRASDGRVVVLLAEDTRDEAFFWMSRNEEKRM-------- 502

Query: 617 GFLIAEEDLKQRK--EGEILG-IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
                EE+L++ K  EGEI   I Q+ +  F  A PE  +     A  +A+    + PD
Sbjct: 503 -----EEELRKLKSIEGEIEAEIAQADLGSFAEAPPEGSEESEHTAEDEAESGEAEPPD 556


>gi|71987143|ref|NP_001022623.1| INitiation Factor family member (inf-1) [Caenorhabditis elegans]
 gi|124217|sp|P27639|IF4A_CAEEL RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Initiation factor 1
 gi|6700|emb|CAA78102.1| unnamed protein product [Caenorhabditis elegans]
 gi|532818|gb|AAA21170.1| Initiation factor protein 1, isoform a, confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 402

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 139/328 (42%), Gaps = 75/328 (22%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQI-IV 352
           I Q   G+GKT    +++   ++      QA++MAP   LAQQ  + +    +   + I+
Sbjct: 70  IAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNIL 129

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQH 404
             I G   +  +RK    I     H+++GT     D I    L        +L   DE  
Sbjct: 130 PCIGGTSVRDDQRKLEAGI-----HVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEML 184

Query: 405 RFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
             G + ++    ++      V+L++AT     L +T+               R PI+ ++
Sbjct: 185 SRGFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTN------------RFMRNPIRILV 232

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN-------------- 508
               + DE+         EG + ++I  Q   K E  F  + + +N              
Sbjct: 233 ----KKDELT-------LEGIRQFYINVQ---KDEWKFDCLCDLYNVVNVTQAVIFCNTR 278

Query: 509 ----SLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
               +L E  T    +++ +HG M   +++++M  F++G+ ++LI T ++  GIDV   S
Sbjct: 279 RKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVS 338

Query: 562 IIII----ENAEHFGLAQLHQLRGRVGR 585
           ++I      N E++    +H++ GR GR
Sbjct: 339 LVINYDLPSNRENY----IHRI-GRSGR 361


>gi|225562444|gb|EEH10723.1| ATP-dependent RNA helicase EIF4A [Ajellomyces capsulatus G186AR]
          Length = 386

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 129/301 (42%), Gaps = 62/301 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    V+      QA+I+AP   LAQQ  + +        I   
Sbjct: 66  IAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECH 125

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G +      KAL+        +++GT     D IQ   L        +L   DE   
Sbjct: 126 ACIGGISVREDMKALQ----DGPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLS 181

Query: 406 FGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G  +++    +   ++T   V+L++AT +P+          D+ ++T K   R P++ +
Sbjct: 182 HGFTEQIYDIFQFLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPVRIL 227

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------R 506
           +          ++ ++ L EG K ++I  + EE K      + E               +
Sbjct: 228 V----------KKAELTL-EGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 276

Query: 507 FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++
Sbjct: 277 VDWLTDKLTARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 336

Query: 564 I 564
           I
Sbjct: 337 I 337


>gi|218890286|ref|YP_002439150.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|218770509|emb|CAW26274.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 446

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 151/368 (41%), Gaps = 65/368 (17%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG- 321
           K L ++ FS PT  Q +AI   L+        LR+     GSGKT   L+ +   + A  
Sbjct: 18  KALESLSFSEPTPVQAAAIPKALEGHD-----LRV-TAQTGSGKTAAFLLPLLHRLLAED 71

Query: 322 -----GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN----MPQAHRRKALERIA 372
                 +A+I+ P   LAQQ  + ++++ Q T I   +ITG     +  A  RK  E   
Sbjct: 72  KPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKNPE--- 128

Query: 373 HGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVL-LM 426
                IIIGT     +      L L     +++DE  R        +     A  VL L 
Sbjct: 129 -----IIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADR--------MLDMGFADDVLALA 175

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAG-RKPIKTV-----IIPINRIDEVIERLKV-VL 479
            A P  R  +L S         T   AG  K I  V     ++ +N++ E+ E ++  V+
Sbjct: 176 NACPAERQTLLFS--------ATHSGAGLNKVIAEVLREPQVLRLNQVGELSENVRQQVI 227

Query: 480 SEGKKAY------WICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           +    A+      W+       K    +N R   +R           + ++HG     D+
Sbjct: 228 TADDVAHKEQLLQWLLSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDR 287

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEI 589
           +  ++  K G  K+L+AT V   G+DV    ++I  +    G   +H++ GR GR G E 
Sbjct: 288 KLAIERLKQGAVKILVATDVAARGLDVEGLDLVINFDMPRSGDEYVHRI-GRTGRAGAEG 346

Query: 590 SSCILLYH 597
            +  L+ H
Sbjct: 347 LAISLICH 354


>gi|187736197|ref|YP_001878309.1| ATP-dependent DNA helicase, RecQ family [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187426249|gb|ACD05528.1| ATP-dependent DNA helicase, RecQ family [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 716

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 92/230 (40%), Gaps = 30/230 (13%)

Query: 383 HALFQDSIQYYKLILVIVDEQH---RFGVQQR---LKLTQKATA---PHVLLMTATPIPR 433
           H  F  ++    + +V VDE H   ++G   R   LKL +       P V  +TAT  PR
Sbjct: 125 HEGFMHALAEVDVNMVAVDEAHCLSQWGHDFRPDYLKLGKAVEMMGRPQVAALTATATPR 184

Query: 434 TL--VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
               +L  LG  D   I    A R+ +   I   +   +  +RL  ++   K     C  
Sbjct: 185 VREDILKHLGLDDPVTIVRGFA-RENLHFRITACDTHKDKYKRLYELVKRYKTGIIYC-- 241

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  + R  VE+       F  S+   H  M+D  +E   ++F N    ++IAT   
Sbjct: 242 -------STRKKVEQVYEALSDFGLSVTAYHAGMTDEQREEAQNAFMNRHADIVIATNAF 294

Query: 552 EVGIDVVDASIIIIENAEHF----GLAQLHQLRGRVGRGEEISSCILLYH 597
            +GID  D   +      HF     +   +Q  GR GR  E + C LL++
Sbjct: 295 GMGIDRADVRFVA-----HFEIPGSVEAYYQEAGRAGRDGEEAYCELLFN 339


>gi|188584150|ref|YP_001927595.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179347648|gb|ACB83060.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 567

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 142/347 (40%), Gaps = 46/347 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A  +          A   A+++AP   LA Q   E    Y Q
Sbjct: 39  LVSAQTGSGKTVAFGLAIAGTLLGPEEALPPPAAPLALVIAPTRELALQVQRELTWLYAQ 98

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVD 401
               +V  + G  P   RR+A  R      HI++GT    +D ++  +L+      V++D
Sbjct: 99  TGARVVPCVGGMDP---RREA--RALEAGVHIVVGTPGRLRDHMERGRLVTEGLRAVVLD 153

Query: 402 EQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGR 455
           E       G ++ L+    AT      LL +AT +P+ +V L      D  ++      R
Sbjct: 154 EADEMLDMGFREDLEFILAATPEDRRTLLFSAT-LPKAIVALAESYQRDALRLAVAGETR 212

Query: 456 KPIKTV-----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN-S 509
                V     ++P      V+  L+ V  +   A   C         N R  V     S
Sbjct: 213 GHADIVYRAVRVMPREIEHAVVNVLRYV--DAPVAIVFC---------NTRDGVRHLQAS 261

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L E   S++A+  G +   ++ + + + ++G  ++ +AT V   GID+    ++I  +  
Sbjct: 262 LTERGFSAVAL-SGELGQGERNAALQALRDGRARVCVATDVAARGIDLPGLDLVIHADLP 320

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           H      H+  GR GR     + ++L  P   + +    ++ K + D
Sbjct: 321 HDAEVMQHR-SGRTGRAGRKGTSVVLVPPARRRRAEQMFAIAKVSPD 366


>gi|17507121|ref|NP_491703.1| hypothetical protein F33D11.10 [Caenorhabditis elegans]
 gi|2773184|gb|AAB96704.1| Hypothetical protein F33D11.10 [Caenorhabditis elegans]
          Length = 399

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 148/342 (43%), Gaps = 61/342 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ A+  IL     K R + I Q   G+GKT    I++  +++      QA+I++P
Sbjct: 49  PSAIQQRAVPAIL-----KARDV-IAQAQSGTGKTATFSISVLQSLDTQVRETQALILSP 102

Query: 330 IGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
              LA Q  + +       N Q    I   N+ +  R+     + +GQ H++ GT     
Sbjct: 103 TRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRK-----LDYGQ-HVVSGTPGRVF 156

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVL 437
           D I+   L        +L   DE    G +++L    +   P   V+L++AT     L +
Sbjct: 157 DMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEM 216

Query: 438 TSLGDIDISKITEK--PAGRKPIKTVIIPINR----IDEVIERLKVV--------LSEGK 483
           TS    D  +I  K      + IK   + ++R     D +I+    +         +  +
Sbjct: 217 TSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRR 276

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           K  W+  ++   KE+NF                +++ +HG M   D++ VM  F+ GT +
Sbjct: 277 KVDWLTDKM---KEANF----------------TVSSMHGDMEQKDRDEVMKEFRAGTTR 317

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +LI+T V   G+DV   S++I  +  +     +H++ GR GR
Sbjct: 318 VLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRI-GRSGR 358


>gi|58617278|ref|YP_196477.1| primosomal protein N' [Ehrlichia ruminantium str. Gardel]
 gi|58416890|emb|CAI28003.1| Primosomal protein N' [Ehrlichia ruminantium str. Gardel]
          Length = 664

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 10/176 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EA 320
           +K   +I  + + +Q+ A  +I+  +S  + +L  L G+ GSGKT V    +   V  + 
Sbjct: 126 KKYSSDIKINLSDAQKQAYNNIIGKISSYSVIL--LDGETGSGKTEVYCEVIRELVTRDN 183

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             Q +++ P  +L  Q  + IK Y  N    VE    N+    RR+    IA+GQ+ I+I
Sbjct: 184 TAQVLVLLPEIVLTLQLIKRIKYYFAN-YFPVEW-HSNLTVKSRREYWLSIAYGQSSIVI 241

Query: 381 GTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           G   ALF   + +  L ++IVDE+H    +Q   +   A    ++L     IP  L
Sbjct: 242 GARSALF---LPFKNLKMIIVDEEHDASFKQDYGVIYNARDMSIVLAKQFNIPVIL 294


>gi|329770525|ref|ZP_08261903.1| hypothetical protein HMPREF0433_01667 [Gemella sanguinis M325]
 gi|328836274|gb|EGF85943.1| hypothetical protein HMPREF0433_01667 [Gemella sanguinis M325]
          Length = 786

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 10/156 (6%)

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +E     KIL N      + Q+  +  IL+D ++ N    +L G  GSGKT + +  +  
Sbjct: 239 IETNFDNKILSN-NVQLNEKQQGVLNHILKDFNKNNFNEYLLHGVTGSGKTEIYIRLVEE 297

Query: 317 AVEAGGQAVIMAPIGILAQQ-HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           A+++   ++++ P  IL  Q   +F   +  N    + +I   +    +    ++I  G+
Sbjct: 298 ALKSNKNSIVLVPEIILTPQIEKKFRNIFGNN----ISVIHSRLSPKEKYHEWKKIKDGK 353

Query: 376 AHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            +I +GT  A+F     +  L L+I+DE+H    +Q
Sbjct: 354 VNICLGTRSAVFA---PFENLGLIIIDEEHENSYKQ 386


>gi|301384847|ref|ZP_07233265.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059212|ref|ZP_07250753.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           K40]
 gi|302130851|ref|ZP_07256841.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|331017330|gb|EGH97386.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 445

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 148/352 (42%), Gaps = 52/352 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AAAVEAGGQAVI 326
           PT  Q +AI   LQ      R LR+     GSGKT   ++ +       A V    +AVI
Sbjct: 23  PTPVQAAAIPLALQ-----GRDLRV-TAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAVI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + +++++Q T +   +ITG      +   L ++      I+IGT    
Sbjct: 77  LLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD----ILIGTPGRL 132

Query: 387 QDSIQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTL- 435
            + +    L L     +++DE  R    G  + ++    + A     +L +AT     L 
Sbjct: 133 LEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLR 192

Query: 436 -----VLTSLGDIDISKITEKPAG-RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                VL     + ++ ++E  +G R  I T        D  + + +V+        W+ 
Sbjct: 193 EMIGKVLKDPQHLQVNSVSELASGTRHQIITA-------DHNVHKEQVL-------NWLL 238

Query: 490 PQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                +K    +N +++ +R             ++HG     D+++ +D  K G  K+++
Sbjct: 239 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
           AT V   G+DV    ++I  +    G   +H++ GR GR G +  +  L+ H
Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICH 349


>gi|289742973|gb|ADD20234.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 616

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 138/337 (40%), Gaps = 39/337 (11%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  ++ +   
Sbjct: 179 TGSGKTLGYILPAIVHINNQQPLSRGEGPIALVLAPTRELAQQIQQVATEFGSSSYVRNT 238

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G  P+  + + L+R       I+I T     D     +    +   +++DE  R   
Sbjct: 239 CVFGGAPKGGQMRDLQR----GCEIVIATPGRLIDFLAAGATNLKRCTYLVLDEADRMLD 294

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGD-IDISKITEKPAGRKPIK 459
             F  Q R  L+Q       L+ +AT  P+    L    LG+ I I+  + + +    I+
Sbjct: 295 MGFEPQIRKILSQIRPDRQTLMWSAT-WPKEVKQLAEDFLGNYIQINIGSLELSANHNIR 353

Query: 460 TVIIPINRIDEVIERLKVVLSE----GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            VI   +  D+   +LK +LS+    G+    I   +E K+       V+        F 
Sbjct: 354 QVIEICDENDKET-KLKSLLSQIYDTGENPGKIIIFVETKRR------VDHLVRYIRSFG 406

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
                IHG  S  +++ V+  F++G   +L+AT V   G+DV     +I  +        
Sbjct: 407 VRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQSSEDY 466

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +H++ GR GR     +    +    +K S   L VLK
Sbjct: 467 IHRI-GRTGRSNTKGTSYAFFTRNNAKQSKALLEVLK 502


>gi|242242120|ref|ZP_04796565.1| superfamily II DNA/RNA helicase ComFA [Staphylococcus epidermidis
           W23144]
 gi|242234433|gb|EES36745.1| superfamily II DNA/RNA helicase ComFA [Staphylococcus epidermidis
           W23144]
          Length = 360

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 147/359 (40%), Gaps = 69/359 (19%)

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           A K    +PF  +K Q+ A + I+Q +   N +L  L    G+GKT +    +  A + G
Sbjct: 16  ATKANYQLPFELSKQQQYASEAIIQAIKNNNDLL--LYAVTGAGKTEMMFEGIRIARQMG 73

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL---ERI------- 371
               I++P                    +I+EI       +HR K     ERI       
Sbjct: 74  HNIAIVSP-----------------RVDVIIEI-------SHRIKDAFIDERIDVLHQSS 109

Query: 372 -AHGQAHIIIGT-HALFQDSIQYYKLILVIVDEQHRF------GVQQRLKLTQKATAPHV 423
                 H +I T H L +   Q++    V VDE   F       +   ++L  K    H+
Sbjct: 110 RQQYNGHFVIATIHQLLRFK-QHFD--TVFVDEVDAFPLSMDPQLSNAIQLASKLNHSHI 166

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPA--GRKPIKTVIIPINRIDEVIERLKVVLSE 481
             MTATP PR      L      KI + PA   R P     +PI +      +LK    +
Sbjct: 167 -FMTATP-PRHF----LKQFPPEKIIKLPARFHRHP-----LPIPKFKYF--KLKSTRKQ 213

Query: 482 GKKAYWICPQIEEKKES-NFRSVVERFNSLHEHFTSSIA---IIHGRMSDIDKESVMDSF 537
                    QI +++ +  F + +E  N  ++ +   IA    +H    D+  E + D  
Sbjct: 214 NLLLNLFRNQINQQRFTLVFFNNIEIMNKTYQQYKMDIADLICVHSE-DDLRFEKIED-L 271

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           + G  K++  TT++E G  +    +++++ A  F    L Q+ GRVGR ++  S ++L+
Sbjct: 272 RRGQYKIVFTTTILERGFTMTHLDVVVVD-AGSFQQEALIQIAGRVGRKQQSPSGLVLF 329


>gi|154252927|ref|YP_001413751.1| DEAD/DEAH box helicase domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154156877|gb|ABS64094.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 448

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 166/374 (44%), Gaps = 52/374 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT----LVALIAMAAAVEA----GGQ 323
           +PT  Q  AI  +L+       +L + Q   G+GKT    L  L  +AAA E       +
Sbjct: 26  NPTPIQAQAIPALLEGRD----LLGLAQ--TGTGKTAAFALPILQILAAANEKRQPKEAR 79

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  + I+ Y +N ++   +I G + Q  + KA+         I++ T 
Sbjct: 80  ALILAPTRELAVQISQSIESYGKNFKLRHTVIFGGVNQFRQVKAMT----AGVDIVVATP 135

Query: 384 A-----LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVL 437
                 + Q  +   +  L+++DE  R      ++  +K       ++ A P  R +L+ 
Sbjct: 136 GRLLDLMNQKHVNLSRTSLLVLDEADRMLDMGFIRDVRK-------IIAAMPRQRQSLLF 188

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++     I  + ++   R+P++  + P     + I++ +V+  +GK+   +  ++ +  E
Sbjct: 189 SATMPSSIQHLADEIL-REPVRVEVTPEVVTVDKIDQ-RVLHVDGKRKRELLAKLLDNSE 246

Query: 498 SN----FRSVVERFNSLHEHFTSSIAI---IHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +    F       N + E    S  +   IHG  S   ++  +D F+NG  ++L+AT +
Sbjct: 247 LSRVIVFTRTKHCANRVSEQLDKSGVLSEAIHGNKSQGARQRALDMFRNGKARVLVATDI 306

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR--- 607
              GIDV D + +I     +   + +H++ GR  R  +  S I L     S+ S+ R   
Sbjct: 307 AARGIDVSDITHVINYELPNEPESYVHRI-GRTARAGK--SGIALSFCDASERSHLRSIE 363

Query: 608 ------LSVLKNTE 615
                 L+V+  TE
Sbjct: 364 KLTKRPLTVMDTTE 377


>gi|119872132|ref|YP_930139.1| DEAD/DEAH box helicase domain-containing protein [Pyrobaculum
           islandicum DSM 4184]
 gi|119673540|gb|ABL87796.1| DEAD/DEAH box helicase domain protein [Pyrobaculum islandicum DSM
           4184]
          Length = 927

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 156/361 (43%), Gaps = 66/361 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA-----MAAAVEAGGQAVI- 326
           PT+ Q+ AI +IL      N +L I     GSGKT  A++      + + +E  G  V+ 
Sbjct: 22  PTEPQKLAIPEILAG----NNVLII--APTGSGKTEAAILPILSRMLESNIERPGIYVLY 75

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P+  L +   + IK + +     V++  G+  +A R+K     +    HI+I T  + 
Sbjct: 76  ITPLRALNRDLLDRIKWWGERVGFKVDVRHGDTDKADRQKQ----SKSPPHILITTPEML 131

Query: 387 QD------SIQYYK-LILVIVDEQHRFGVQQR---LKLTQKATAPHVLLMTATPIPRTLV 436
           Q        ++Y K L  V+VDE H     +R   L L  +    H        I R   
Sbjct: 132 QAIMTGRRLLEYLKELRWVVVDEVHELAEDKRGVQLSLALERLRYH--------IGRDFQ 183

Query: 437 LTSLG-----DIDISKITEKPAGRKPIKTVIIPINR---IDEVI-----ERLKVVLSEG- 482
           +  L       ++++K      G +P K V++   R   +D V      E  ++  + G 
Sbjct: 184 IVGLSATVGSPVEVAKFL--VGGSRPFKVVLVNFARQMKLDVVRPKPTEEDYRLAEASGL 241

Query: 483 -----KKAYWICPQIEEKKES----NFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKE 531
                 +  +I   +EE + +    N RS+ E       +      IA+ H  +S + + 
Sbjct: 242 FPDVIARLRFIRKLVEENRSTLVFVNTRSMAELLGFRLSYLFGDLPIAVHHSSLSKMVRV 301

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEIS 590
           SV +  K G  K ++AT+ +E+GID+    ++I   + H    Q+ +L  RVGR G  +S
Sbjct: 302 SVEERLKKGELKAVVATSSLELGIDIGHIDLVIQYISPH----QVTRLLQRVGRSGHRLS 357

Query: 591 S 591
           +
Sbjct: 358 A 358


>gi|59711751|ref|YP_204527.1| DNA and RNA helicase [Vibrio fischeri ES114]
 gi|59479852|gb|AAW85639.1| DNA and RNA helicase [Vibrio fischeri ES114]
          Length = 431

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 125/317 (39%), Gaps = 47/317 (14%)

Query: 297 ILQGDVGSGKTLV--------ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           +     G+GKT           L +  +A     +A+I+AP   LA+Q    I  Y + T
Sbjct: 42  LANAQTGTGKTAAFALPVIQQLLDSKKSATRRTARALILAPTRELAEQIAVNIADYIKYT 101

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQ 403
            + V  + G    + + +ALE        I++ T    Q+ I+        L  ++ DE 
Sbjct: 102 SLTVTSVFGGKKMSSQERALE----PGVDILVATPGRLQEHIEEENVSIANLEFLVFDEA 157

Query: 404 HR-----FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            R     F    R  + +  T+P ++L +AT   +   L S    DI         RKP 
Sbjct: 158 DRMLDMGFVNAIRNIMMEVNTSPQIMLFSATSSAQMNKLAS----DIL--------RKPK 205

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV------ERFNSLHE 512
           +  + P N     I  +   + E +K   +   I  K   N++ V+      E  N + +
Sbjct: 206 RISVDPENTTASTIAHVVYPVDEERKTELLSELIGRK---NWQQVLVFVNYKETANEIVK 262

Query: 513 HFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                     + HG  +   +   ++ FK G  ++++AT V   G+D+ D   +I  +  
Sbjct: 263 ELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATDVAARGLDIADLPHVINYDMP 322

Query: 570 HFGLAQLHQLRGRVGRG 586
                 +H++ GR GR 
Sbjct: 323 FLAEDYVHRI-GRTGRA 338


>gi|49475435|ref|YP_033476.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
 gi|49238241|emb|CAF27451.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
          Length = 467

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 143/349 (40%), Gaps = 48/349 (13%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG- 321
           K ++++ ++ PT  Q   I  +LQ    +  +L I Q   G+GKT   ++ M   +E G 
Sbjct: 19  KAVKSVGYTVPTPIQSGTIPHVLQ----RRDVLGIAQ--TGTGKTASFVLPMLTLLEKGR 72

Query: 322 -----GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 + +I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER      
Sbjct: 73  ARARMPRTLILEPTRELAAQVEENFDKYGINHRLNVALLIGGVSFEQQDRKLER----GV 128

Query: 377 HIIIGTHALFQDSIQYYKLILV-----IVDEQHRF-------GVQQRLKLTQKATAPHVL 424
            ++I T     D  +  KL+L+     ++DE  R         +++  KLT        L
Sbjct: 129 DVLIATPGRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPEIERICKLT--PFTRQTL 186

Query: 425 LMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLS 480
             +AT  P    LT   L      ++T+  +    I   ++       D+     +++ +
Sbjct: 187 FFSATMAPEITKLTKQFLHSPVTVEVTKASSTASTITQRLVKSGNKAWDKRAVLRELIHN 246

Query: 481 EG---KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           EG   K A   C        +  R + E   SL  H   S+  +HG M    + S +  F
Sbjct: 247 EGDKLKNAIIFC--------NRKRDISELLRSLIRH-NFSVGALHGDMDQYSRMSTLADF 297

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           K+    LL+A+ V   G+D+   S +   +        +H++ GR GR 
Sbjct: 298 KDNKITLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRI-GRTGRA 345


>gi|665989|dbj|BAA11693.1| deaD [Bacillus subtilis]
          Length = 479

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 147/350 (42%), Gaps = 46/350 (13%)

Query: 260 KIAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALI 312
           +I+  ILR +       PTK Q+S I   L+      R   +++   GSGKT    + L 
Sbjct: 8   QISHDILRALEGLGYTEPTKVQQSVIPAALE------RKDLVVKSQTGSGKTASFGIPLC 61

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            +A   E   QA+I+ P   LA Q  E I    +  +I    + G      ++  L++  
Sbjct: 62  ELANWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQ-- 119

Query: 373 HGQAHIIIGTHALFQDSIQYYKL------ILVI--VDEQHRFGVQQRLKLTQK--ATAPH 422
             ++HI++GT     D I+   L       LVI   DE    G  ++++   K   T   
Sbjct: 120 --KSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERT 177

Query: 423 VLLMTATPIPRTLVLTSLGDI-DISKITEKPAG--RKPIKTVIIPINRIDEVIERLKVVL 479
            +L +AT +P+ +   S   + +   I  K AG   + I+  +I +   ++      V++
Sbjct: 178 TMLFSAT-LPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLM 236

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDS 536
           +E   +  I           F    E  N L +           IHG M   D+  VM+ 
Sbjct: 237 TENPDSCII-----------FCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNE 285

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           FK G  + L+AT V   GID+ + S++I  +      + +H+  GR GR 
Sbjct: 286 FKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRT-GRTGRA 334


>gi|288942044|ref|YP_003444284.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288897416|gb|ADC63252.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 454

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 131/325 (40%), Gaps = 37/325 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           ++    GSGKT   L+ +          +   +A+I+ P   LA+Q +    +    T++
Sbjct: 44  LVSAATGSGKTAAFLLPIMQRFIDVPRHDGSTRALILVPTRELARQIHIHFMRLGSYTRL 103

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR 405
              +ITG   +AH+   L +       I++ T       L         L  +++DE  R
Sbjct: 104 TSGVITGGESKAHQIATLRK----NPEILVATPGRLLEFLETGQANLRDLEFLVLDEADR 159

Query: 406 FGVQQRLKLTQKATAPHVLLMT--ATPIPRTLVLT-SLGDIDISKITEKPAGRKPIKTVI 462
                   +     A  VL +   + P  ++L+ + +L    +S+ITE+   R P +  +
Sbjct: 160 --------MLDMGFADDVLAIIRYSRPERQSLLFSATLEQRGLSQITERLL-RDPQRVDV 210

Query: 463 IPINRIDEVIERLKVVLSEG-----KKAYWICPQIEEKKE---SNFRSVVERFNSLHEHF 514
            P+ +    I    ++LS+G     ++  W+      +K    +N R       +  +  
Sbjct: 211 DPVRQQHPDIAHC-MLLSDGLEHKQQQLLWLLRHETYEKALIFTNTREGAVALGNFLQGQ 269

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A++HG +   ++  VM    +G    LIAT +   GIDV     +   +    G  
Sbjct: 270 QQRVAVLHGELDQRERNRVMGLLHSGRVNTLIATDLAARGIDVPGVQRVFNFDLPRRGDD 329

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP 599
            LH+  GR GR  E    I L  PP
Sbjct: 330 YLHRT-GRTGRAGEAGVAISLVGPP 353


>gi|240281151|gb|EER44654.1| ATP-dependent RNA helicase eIF4A [Ajellomyces capsulatus H143]
 gi|325092352|gb|EGC45662.1| RNA helicase [Ajellomyces capsulatus H88]
          Length = 398

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 126/299 (42%), Gaps = 58/299 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    V+      QA+I+AP   LAQQ  + +        I   
Sbjct: 66  IAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECH 125

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDE-----Q 403
              G +      KAL+        +++GT     D IQ   L      + ++DE      
Sbjct: 126 ACIGGISVREDMKALQ----DGPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLS 181

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           H F  Q          +  V+L++AT +P+          D+ ++T K   R P++ ++ 
Sbjct: 182 HGFTEQIYDIFQFLPQSTQVVLLSAT-MPQ----------DVLEVTTKFM-RDPVRILV- 228

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------RFN 508
                    ++ ++ L EG K ++I  + EE K      + E               + +
Sbjct: 229 ---------KKAELTL-EGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVD 278

Query: 509 SLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 279 WLTDKLTARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 337


>gi|188994014|ref|YP_001928266.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
           33277]
 gi|188593694|dbj|BAG32669.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
           33277]
          Length = 427

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 126/311 (40%), Gaps = 45/311 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            G+GKT   L+ +   + AG        AVIMAP   LAQQ  + ++ ++    +    I
Sbjct: 47  TGTGKTAAYLLPILDRLSAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAI 106

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---- 406
            G        +    +A G A I+I T       L   S     +   ++DE  R     
Sbjct: 107 YGGTDGVAWEQQRRGMAMG-ADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMG 165

Query: 407 ---GVQQRLKLTQKATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTV 461
               + Q  K  Q  ++   ++ +AT  P  R L  + L              R PI+ V
Sbjct: 166 FFDDIMQIYK--QLPSSCQTVMFSATMPPKIRKLAASIL--------------RDPIE-V 208

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNFRSV---VERFNSLHEHFT 515
            I I+R  E I +   +  E +K   +    E+   K+   F S    V    S      
Sbjct: 209 EIAISRPPESIMQSAYICYEAQKLPILRKLFEQSAPKRTIIFASAKLKVRELTSTLRKMG 268

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            ++A +H  +    +E VM  FKNG   +L+AT ++  GID+ +  ++I  +  H     
Sbjct: 269 FNVADMHSDLEQSQREQVMRDFKNGYVDVLVATDIVARGIDIDNIRVVINYDIPHDPEDY 328

Query: 576 LHQLRGRVGRG 586
           +H++ GR  RG
Sbjct: 329 VHRI-GRTARG 338


>gi|296201836|ref|XP_002748197.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 4
           [Callithrix jacchus]
          Length = 535

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 126/314 (40%), Gaps = 47/314 (14%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER       I I T 
Sbjct: 91  CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 146

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF---GVQ------------QRLKLTQKATAPHV 423
               D ++  K  L     +++DE  R    G +             R  L   AT P  
Sbjct: 147 GRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 206

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII--PINRIDEVIERLKVVLSE 481
           +   A    +  +  ++G +++S      A    ++ V +   + + +++I  ++ ++SE
Sbjct: 207 VRQLAEDFLKDYIHINIGALELS------ANHNILQIVDVCHDVEKDEKLIRLMEEIMSE 260

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
                      +E K   F     R + L             IHG  S  +++ V++ FK
Sbjct: 261 -----------KENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 309

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    + P
Sbjct: 310 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTFFTP 368

Query: 599 PLSKNSYTRLSVLK 612
              K     +SVL+
Sbjct: 369 NNIKQVSDLISVLR 382


>gi|294139048|ref|YP_003555026.1| primosomal protein N' [Shewanella violacea DSS12]
 gi|293325517|dbj|BAJ00248.1| primosomal protein N' [Shewanella violacea DSS12]
          Length = 731

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 10/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P +    Q  A+  + Q   Q      +L+G  GSGKT V L  + + ++ G QA+I+ P
Sbjct: 199 PLTLNPEQAVAVATLNQ---QSGYHCTLLEGITGSGKTEVYLALLESVLKQGKQALILVP 255

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            IG+  Q     I ++    ++ V +I   +    R  A  +   G+A IIIGT +    
Sbjct: 256 EIGLTPQT----ISRFKSRFKVKVAVIHSGLTDNQRLTAWRQAKTGEAAIIIGTRSALFT 311

Query: 389 SIQYYKLILVIVDEQHRFGVQQR 411
            + Y   I  I+DE+H    +Q+
Sbjct: 312 PMAYPGTI--ILDEEHDSSFKQQ 332


>gi|293610166|ref|ZP_06692467.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827398|gb|EFF85762.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 742

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +  + Q+ A + ++    Q    L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 202 LAQMPLTLNEDQKKATQHVVNAQHQYQAFL--LDGLTGSGKTEVYLHIMHEVLKQGKQVL 259

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F  ++  +    + ++   +  + R +A ++   G+A II+GT +
Sbjct: 260 VLVPEIGLTPQTISRFKSRFNCD----IALLHSGLNDSKRLQAWQQAQTGKASIILGTRS 315

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                +   +L L+I+DE+H    +Q+
Sbjct: 316 AIYTPLP--RLGLIILDEEHDLSYKQQ 340


>gi|293192664|ref|ZP_06609618.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
 gi|292820171|gb|EFF79168.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
          Length = 722

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 158/373 (42%), Gaps = 55/373 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKTL---VALIAMAAAVEAGGQAVIM 327
           PT  Q +AI  +L+        LR + G    G+GKT    + L+A+  A E   QA+++
Sbjct: 68  PTPIQAAAIPPLLE--------LRDVVGIAQTGTGKTAAFGLPLLAIVDADERNVQALVL 119

Query: 328 APIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           AP   LA Q  + I+ +   T ++ V  + G  P   +  AL+R     A +++GT    
Sbjct: 120 APTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGALKR----GAQVVVGTPGRV 175

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            D I+   L        +L   DE  R G  + ++ T  ++AP   L        T + +
Sbjct: 176 IDLIEKGALDLSHVRMLVLDEADEMLRMGFAEDVE-TIASSAPDDRL--------TALFS 226

Query: 439 SLGDIDISKITEKPAGRKPIKTVI-IPINRIDEVIERLKVVLSEGK----------KAYW 487
           +     I K+  +   + P+K  +    + +D + +   VV  + K          +A  
Sbjct: 227 ATMPAAIEKVAREHL-KDPVKVAVSTESSTVDTIHQTYAVVPYKHKIGALSRVLATRAQH 285

Query: 488 ICPQIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           I    EE   +      R+ VE  +          A I G ++  ++E +++  KNG+  
Sbjct: 286 IKEGQEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKNGSLD 345

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSK 602
           +L+AT V   G+DV   S+++  +      A +H++ GR GR G E     L +  P   
Sbjct: 346 VLVATDVAARGLDVERISLVVNFDVPREPEAYVHRI-GRTGRAGRE--GRALTFFTPREH 402

Query: 603 NSYTRLSVLKNTE 615
               R+  L  TE
Sbjct: 403 GRLRRIEKLTGTE 415


>gi|213022338|ref|ZP_03336785.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 208

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 9/110 (8%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 106 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNTPVEVL 161

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH 404
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H
Sbjct: 162 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLFT---PFKNLGVIVIDEEH 208


>gi|210632534|ref|ZP_03297444.1| hypothetical protein COLSTE_01346 [Collinsella stercoris DSM 13279]
 gi|210159481|gb|EEA90452.1| hypothetical protein COLSTE_01346 [Collinsella stercoris DSM 13279]
          Length = 1127

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 95/477 (19%), Positives = 192/477 (40%), Gaps = 86/477 (18%)

Query: 166 LSVDLFKKIIVEALSRL---PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222
           ++ D    ++ EA++      V P+ + KD+L++    +   A  +    + A       
Sbjct: 535 VNCDTVVDLVFEAVAECWQGRVKPKLMIKDILRRCDDDARCSAVGVASADQGAS------ 588

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF----------- 271
            A + LA D L A      L      +++ +P + E + A   L  +P+           
Sbjct: 589 -AVQALA-DALPADPATCALSSSARGRDLPVPADAERRAA---LAQLPYDQLTRSLVHAL 643

Query: 272 ----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-AMAAAVEAGGQAVI 326
               +P ++Q  A+     D  +  R    + G  G GK+LV  + A+  A+  G  +V 
Sbjct: 644 IGSATPHRAQVEAL-----DALKCGRNTLAVMG-TGRGKSLVFHVHAVREAILNGRASVF 697

Query: 327 MAPI-GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           + P+  ++A Q +       +  T+  V ++TG  P   R +   ++A G+  I++ T  
Sbjct: 698 VYPLRALVADQSFHLAASLAKLGTR--VGVLTGETPSDARDRLFGQLAVGKLDIVLTTPE 755

Query: 385 LFQDSIQYY----KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
                 + +    ++  V+VDE H     +    T     P +L +  +P  R L  T+ 
Sbjct: 756 FLSIHRERFAASRRIGFVVVDEAHHMAGAKGGDRTAYLEMPAILDLLGSP--RVLAATAT 813

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVI---------------------ERLKVVL 479
              D++               I  + RID+V+                      RL  ++
Sbjct: 814 ASTDVAD-------------EICRLARIDKVVVDAAVRDNLGLDDERDLANRENRLVSIV 860

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + G+K   +     ++  +  R++  R   L     + IA  +  +S  D+ +V  +F++
Sbjct: 861 ANGEKCV-VYVNSRDQSVALCRTLRRRVPEL----GTRIAFYNAGLSRADRTAVEAAFRS 915

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           G    +++T+    G+++ D   +++ +   FG  + +Q+ GR GR    +   LLY
Sbjct: 916 GELTCIVSTSAFGEGVNLPDIRHVVLYHMP-FGSIEFNQMSGRAGRDGAPARIHLLY 971


>gi|154508882|ref|ZP_02044524.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798516|gb|EDN80936.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC
           17982]
          Length = 722

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 158/373 (42%), Gaps = 55/373 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKTL---VALIAMAAAVEAGGQAVIM 327
           PT  Q +AI  +L+        LR + G    G+GKT    + L+A+  A E   QA+++
Sbjct: 68  PTPIQAAAIPPLLE--------LRDVVGIAQTGTGKTAAFGLPLLAIVDADERNVQALVL 119

Query: 328 APIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           AP   LA Q  + I+ +   T ++ V  + G  P   +  AL+R     A +++GT    
Sbjct: 120 APTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGALKR----GAQVVVGTPGRV 175

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            D I+   L        +L   DE  R G  + ++ T  ++AP   L        T + +
Sbjct: 176 IDLIEKGALDLSHVRMLVLDEADEMLRMGFAEDVE-TIASSAPDDRL--------TALFS 226

Query: 439 SLGDIDISKITEKPAGRKPIKTVI-IPINRIDEVIERLKVVLSEGK----------KAYW 487
           +     I K+  +   + P+K  +    + +D + +   VV  + K          +A  
Sbjct: 227 ATMPAAIEKVAREHL-KDPVKVAVSTESSTVDTIHQTYAVVPYKHKIGALSRVLATRAQH 285

Query: 488 ICPQIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           I    EE   +      R+ VE  +          A I G ++  ++E +++  KNG+  
Sbjct: 286 IKEGQEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKNGSLD 345

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSK 602
           +L+AT V   G+DV   S+++  +      A +H++ GR GR G E     L +  P   
Sbjct: 346 VLVATDVAARGLDVERISLVVNFDVPREPEAYVHRI-GRTGRAGRE--GRALTFFTPREH 402

Query: 603 NSYTRLSVLKNTE 615
               R+  L  TE
Sbjct: 403 GRLRRIEKLTGTE 415


>gi|126733715|ref|ZP_01749462.1| Possible DNA helicase [Roseobacter sp. CCS2]
 gi|126716581|gb|EBA13445.1| Possible DNA helicase [Roseobacter sp. CCS2]
          Length = 1873

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 137/322 (42%), Gaps = 39/322 (12%)

Query: 302 VGSGKTLVALI-AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G+GK++   I A++   + G   V+++P+  L       +++   ++ +    I G M 
Sbjct: 330 TGTGKSVCYQIPALSRFDKTGALTVVVSPLVALMADQVHGMERAGISSSVT---INGMMS 386

Query: 361 QAHRRKALERIAHGQAHI-IIGTHALFQDSI----QYYKLILVIVDEQH---RFG----- 407
              R+ ALE++  G A I II    L   SI    +  ++   ++DE H   ++G     
Sbjct: 387 MPERQDALEKVRMGDASILIISPEQLRSTSIRNILKQREIGFWVLDEAHCVSKWGHDFRP 446

Query: 408 ----VQQRLKLTQKATAPH-VLLMTATPIPRTL--VLTSLGD---IDISKITEKPAGRKP 457
               V + +K       P  VL +TAT  P  +  +     D   +D+ K+ +  A R  
Sbjct: 447 DYRYVARFIKEFSGDEPPAPVLCLTATAKPEVVYDITAHFADRVGVDL-KLLDGGAARHN 505

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEHF 514
           + T  +   R +  +  +  V+SE      + PQ          + R   ER  +   H 
Sbjct: 506 L-TFDVRSTRKEAKLGDIYDVISE------MLPQDGRSGAVVYCSSRKSTERVAAFLAHQ 558

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + A  H  +S  +K+   + F+ G  +++ AT    +GID  D  ++I  +     L 
Sbjct: 559 GMAAAHFHAGLSPDEKKDTQEKFRIGDLRVIAATNAFGMGIDKPDIRLVIHCDIPG-SLE 617

Query: 575 QLHQLRGRVGRGEEISSCILLY 596
              Q  GR GR  + ++C+LLY
Sbjct: 618 NYLQEAGRAGRDRQDANCVLLY 639


>gi|118374919|ref|XP_001020647.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89302414|gb|EAS00402.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 396

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 144/344 (41%), Gaps = 65/344 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I+Q   G+GKT V  IA    V+      Q ++++P
Sbjct: 46  PSAVQQRAIKPII-----KGRDV-IVQSQAGTGKTGVFTIAALQIVDKNLREPQVIVLSP 99

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  +          I+V    G          LE+       II GT     D 
Sbjct: 100 TRELAEQTQKVCLALGDYMNILVHCCIGGKSMDDDINRLEK----GVQIISGTPGRIYDM 155

Query: 390 IQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           IQ   L      ++++DE       Q L +  K     +           +V  +L   +
Sbjct: 156 IQRRHLKTRNVKMLVLDE-----ADQMLSMGFKEQVYDIYRYLPHKNQNVVVSATLPQ-E 209

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           I ++T K     PIK ++          +R ++ L EG K ++I   + EK+E  F ++ 
Sbjct: 210 ILEMTNKFMN-DPIKFLV----------KRDELTL-EGIKQFFI---LVEKEEWKFETLC 254

Query: 505 ERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + +N++                        ++F  S+  IHG ++  +++ +M  F+NG 
Sbjct: 255 DLYNTITITQAVIFCNTIKAVKWLSGKMREQNF--SLCSIHGELNQKERDKIMQDFRNGE 312

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            ++L+AT +   G+DV   S++I  +        +H++ GR GR
Sbjct: 313 YRVLVATDIWGRGLDVQQVSVVINYDLPTNRELYIHRI-GRSGR 355


>gi|73969105|ref|XP_860607.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 10 [Canis
           familiaris]
          Length = 655

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 140/358 (39%), Gaps = 64/358 (17%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 132 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 189

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 245

Query: 401 DEQHRF---GVQQRLK-----------------LTQKATAPHVLLMTATPIPRTLVLTSL 440
           DE  R    G + +++                 L   AT P  +   A    R     ++
Sbjct: 246 DEADRMLDMGFEPQIRKIVDQIRVCKTDDTLQTLMWSATWPKEVRQLAEDFLRDYTQINV 305

Query: 441 GDIDIS---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           G++++S    I +       I  V +   +  ++I+ ++ +++E           +E K 
Sbjct: 306 GNLELSANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKT 347

Query: 498 SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F     R + L             IHG  S  +++ V++ F++G   +LIAT V   G
Sbjct: 348 IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRG 407

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +DV D   +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 408 LDVEDVKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 464


>gi|66047019|ref|YP_236860.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|63257726|gb|AAY38822.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|330971079|gb|EGH71145.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 445

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 148/352 (42%), Gaps = 52/352 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AAAVEAGGQAVI 326
           PT  Q +AI   LQ      R LR+     GSGKT   ++ +       A V    +AVI
Sbjct: 23  PTPVQAAAIPLALQ-----GRDLRV-TAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAVI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + +++++Q T +   +ITG      +   L ++      I+IGT    
Sbjct: 77  LLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD----ILIGTPGRL 132

Query: 387 QDSIQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTL- 435
            + +    L L     +++DE  R    G  + ++    + A     +L +AT     L 
Sbjct: 133 LEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLR 192

Query: 436 -----VLTSLGDIDISKITEKPAG-RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                VL     + ++ ++E  +G R  I T        D  + + +V+        W+ 
Sbjct: 193 EMIGKVLKDPQHLQVNSVSELASGTRHQIITA-------DHNVHKEQVL-------NWLL 238

Query: 490 PQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                +K    +N +++ +R             ++HG     D+++ +D  K G  K+++
Sbjct: 239 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
           AT V   G+DV    ++I  +    G   +H++ GR GR G +  +  L+ H
Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICH 349


>gi|210631565|ref|ZP_03296936.1| hypothetical protein COLSTE_00821 [Collinsella stercoris DSM 13279]
 gi|210160006|gb|EEA90977.1| hypothetical protein COLSTE_00821 [Collinsella stercoris DSM 13279]
          Length = 595

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 127/314 (40%), Gaps = 41/314 (13%)

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LAQQ  +  +   + T      + G +    +R  L+R       I+I T  
Sbjct: 121 LVVTPTRELAQQIEDVCRAIAKCTGHTSVTVVGGVSYNPQRDKLKR----GCDILIATPG 176

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIP 432
             QD I      L     +++DE  R         V++ +  T+       LL +AT   
Sbjct: 177 RLQDLIDQGACSLDQVQVLVLDEADRMLDMGFLPAVRRIVGYTRDDR--QTLLFSAT--- 231

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
             L   ++G I  + +   PA     +  I P+    + +E+  + +S   K   +   +
Sbjct: 232 --LDEQAVGSI--TDLVHDPA-----RVEIAPVTSTADTVEQYVLPVSLEAKNALLASVL 282

Query: 493 EEKKESNFRSVV-----ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKL 544
             K+E   R++V      R ++       +    A IHG  S   +E  + +F+ G C +
Sbjct: 283 --KREGASRAIVFCRTKHRADACSRRLARAGITCAAIHGDRSQAQRERALKAFRAGECDV 340

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT V+  GID+ D   ++  +     +  +H++ GR GR  E+   +    P      
Sbjct: 341 LVATDVLARGIDISDVRYVVNFDVPEDPVDYIHRI-GRTGRAGELGWSLTFVTPDDVAEF 399

Query: 605 YTRLSVLKNTEDGF 618
           Y   +++  T D F
Sbjct: 400 YDIEALMGKTADLF 413


>gi|167921338|ref|ZP_02508429.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei BCC215]
          Length = 465

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 135/308 (43%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + I++  +  + + V
Sbjct: 49  IAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKV 108

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHII+GT     D +    L L     +++DE  R  
Sbjct: 109 LTLCGGTPMRPQTQSLE---HG-AHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRML 164

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K      +     P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 165 DMGFFDDIAK------VARQCPPTRQTLLFSATYPDGIAKLSQQFL-RHP-KRVKLEERH 216

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH      +A+
Sbjct: 217 DDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHVLAL 276

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 277 -HGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVYVHRI- 334

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 335 GRTGRADQ 342


>gi|145300612|ref|YP_001143453.1| ATP-dependent RNA helicase DbpA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853384|gb|ABO91705.1| ATP-dependent RNA helicase DbpA [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 459

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 131/336 (38%), Gaps = 66/336 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I +   GSGKT    + + A +       QA+++ P   LA Q  + I++  +   N ++
Sbjct: 45  IAKAKTGSGKTAAFALGLLAKLNVNRLEVQALVLCPTRELADQVAQEIRRLARALPNVKL 104

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR 405
           +   + G    A +   L     G AHI +GT       L Q +++   L  +++DE  R
Sbjct: 105 VT--LCGGTQTAPQSATL---GFG-AHIAVGTPGRILKHLEQGTLELSGLKTLVLDEADR 158

Query: 406 ---------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL-----GDIDI 445
                          +  +QR  L   AT P  +   +  + R  V  S+     G    
Sbjct: 159 MLDMGFGEEINRVISYAPEQRQTLLFSATYPEGIAQMSRGVQRNPVEVSVESLHEGSAIE 218

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            K+ E PAG+           R+D +               W+    +      F +   
Sbjct: 219 QKLYEVPAGQ-----------RLDALT--------------WLLSHYQPASCVVFCNTKR 253

Query: 506 RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             N + +H  +   S   ++G +   +++ V+  F NG+  +L+AT V   G+D+ +   
Sbjct: 254 ACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILVATDVAARGLDIKELGA 313

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +I     +     +H++ GR GR  +    + LY P
Sbjct: 314 VINYELTYDPEVHVHRI-GRTGRAGQQGLALSLYQP 348


>gi|119182910|ref|XP_001242554.1| hypothetical protein CIMG_06450 [Coccidioides immitis RS]
          Length = 388

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 147/352 (41%), Gaps = 79/352 (22%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 18  SPSAIQSRAIVQICKGRDT------IAQAQSGTGKTATFAISILQVIDTALRETQALVLS 71

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + L+   HGQ H++ GT     D
Sbjct: 72  PTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLD---HGQ-HVVSGTPGRVAD 127

Query: 389 SIQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L      ++++DE       G ++++    +   P      AT +   +VL++ 
Sbjct: 128 MIRRRHLRTRHIKMLVLDEADDLLARGFREQIYDVYRYLPP------ATQV---VVLSAT 178

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
              D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E  F
Sbjct: 179 LPYDVLSMTTKFMT-DPVRILV----------KRDELTL-EGLKQYFIAV---EKEEWKF 223

Query: 501 RSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMDSF 537
            ++ + +++L                         +FT  ++ +HG M   +++S+M  F
Sbjct: 224 DTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQDF 281

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
           + G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 282 RQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 328


>gi|58465442|gb|AAW78519.1| DEAD box RNA helicase-PL10B [Monopterus albus]
          Length = 376

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 157/371 (42%), Gaps = 77/371 (20%)

Query: 246 QFKKEIGIPINVEGK-------------IAQKILRNIPFS----PTKSQESAIKDILQDM 288
            F K   IP+   G+             + + I+ NI  S    PT  Q+ AI  I    
Sbjct: 3   NFDKYDDIPVEATGQNCPHHIESFQDVDMGEIIMGNIALSRYTRPTPVQKYAIPII---- 58

Query: 289 SQKNRMLRILQGDVGSGKTLV----------------ALIAMAAAVEAGGQ--------- 323
             K  ++   Q   GSGKT                  AL A  A+ +  G+         
Sbjct: 59  KSKRDLMACAQ--TGSGKTAAFLPPILSQIYTDGPGEALNAAKASGQENGKYGRRKQYPI 116

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           ++++AP   LA Q Y+  +K++  +++   ++ G      + + LER      H+++ T 
Sbjct: 117 SLVLAPTRELALQIYDEARKFSYRSRVRPCVVYGGADIGQQIRDLER----GCHLLVATP 172

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLK-LTQKATAPH-----VLLMTAT 429
               D ++  K+ L     +++DE  R    G + +++ + ++ T PH      ++ +AT
Sbjct: 173 GRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPHKGIRQTMMFSAT 232

Query: 430 PIPRTLVLTS---LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
             P+ + + +   L +     +    +  + I   ++ +   D+    L ++ + GK + 
Sbjct: 233 -FPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLSATGKDSL 291

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +   +E KK ++    +E F     +  +SI   HG  S  D+E  ++ F++G C +L+
Sbjct: 292 TLV-FVETKKGAD---ALEDFLYREGYACTSI---HGDRSQRDREEALNQFRSGKCPILV 344

Query: 547 ATTVIEVGIDV 557
           AT V   G+D+
Sbjct: 345 ATAVAARGLDI 355


>gi|71736956|ref|YP_273717.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|289647906|ref|ZP_06479249.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298488177|ref|ZP_07006214.1| ATP-dependent RNA helicase SrmB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557509|gb|AAZ36720.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157456|gb|EFH98539.1| ATP-dependent RNA helicase SrmB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330869381|gb|EGH04090.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330988677|gb|EGH86780.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010277|gb|EGH90333.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 445

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 148/352 (42%), Gaps = 52/352 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AAAVEAGGQAVI 326
           PT  Q +AI   LQ      R LR+     GSGKT   ++ +       A V    +AVI
Sbjct: 23  PTPVQAAAIPLALQ-----GRDLRV-TAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAVI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + +++++Q T +   +ITG      +   L ++      I+IGT    
Sbjct: 77  LLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD----ILIGTPGRL 132

Query: 387 QDSIQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTL- 435
            + +    L L     +++DE  R    G  + ++    + A     +L +AT     L 
Sbjct: 133 LEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLR 192

Query: 436 -----VLTSLGDIDISKITEKPAG-RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                VL     + ++ ++E  +G R  I T        D  + + +V+        W+ 
Sbjct: 193 EMIGKVLKDPQHLQVNSVSELASGTRHQIITA-------DHNVHKEQVL-------NWLL 238

Query: 490 PQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                +K    +N +++ +R             ++HG     D+++ +D  K G  K+++
Sbjct: 239 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
           AT V   G+DV    ++I  +    G   +H++ GR GR G +  +  L+ H
Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICH 349


>gi|57239263|ref|YP_180399.1| primosomal protein N' [Ehrlichia ruminantium str. Welgevonden]
 gi|57161342|emb|CAH58265.1| primosomal protein N' [Ehrlichia ruminantium str. Welgevonden]
          Length = 659

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 10/176 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EA 320
           +K   +I  + +  Q+ A  +I+  +S  + +L  L G+ GSGKT V    +   V  + 
Sbjct: 121 KKYSSDIKINLSDVQKQAYNNIIGKISSYSVIL--LDGETGSGKTEVYCEVIRELVTRDN 178

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             Q +++ P  +L  Q  + IK Y +N    VE    N+    RR+    IA+GQ+ I+I
Sbjct: 179 TAQVLVLLPEIVLTLQLIKRIKYYFEN-YFPVEW-HSNLTVKSRREYWLSIAYGQSSIVI 236

Query: 381 GTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           G   ALF   + +  L ++IVDE+H    +Q   +   A    ++L     IP  L
Sbjct: 237 GARSALF---LPFKNLKMIIVDEEHDASFKQDYGVIYNARDMSIVLAKQFNIPVIL 289


>gi|332020302|gb|EGI60733.1| Putative ATP-dependent RNA helicase DDX5 [Acromyrmex echinatior]
          Length = 570

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 143/334 (42%), Gaps = 49/334 (14%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  ++     +          G  A+I+AP   LAQQ  +    + 
Sbjct: 154 MVGIAQ--TGSGKTLAYILPAIVHINHQPRLSRNDGPIALILAPTRELAQQIQQVASDFG 211

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIV 400
            ++Q+    I G  P+  + + LER       I I T     D     +    +   +++
Sbjct: 212 MSSQVRNTCIFGGAPKGPQARDLER----GVEICIATPGRLIDFLERGTTNLRRCTYLVL 267

Query: 401 DEQHR---FGVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITE 450
           DE  R    G + ++ K+ ++       LM +   P+ +       LT    I+I  + +
Sbjct: 268 DEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRNLAEEFLTDYIQINIGSL-Q 326

Query: 451 KPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             A    ++ V +     +  ++++ L+ + +E +    I   +E K     R V +   
Sbjct: 327 LAANHNILQIVDVCEEYEKESKLMKLLEEISNEPENKTIIF--VETK-----RKVDDITR 379

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII---- 564
           +++ +   +I  IHG  S  +++ V++ F+N    +L+AT V   G+DV D   +I    
Sbjct: 380 AINRYGWQAIG-IHGDKSQQERDYVLNQFRNSRSAILVATDVAARGLDVEDVKFVINLDY 438

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             N+E +    +H++ GR GR +   +    + P
Sbjct: 439 PSNSEDY----VHRI-GRTGRSQRTGTAYAFFTP 467


>gi|330501428|ref|YP_004378297.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina NK-01]
 gi|328915714|gb|AEB56545.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina NK-01]
          Length = 458

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 98/435 (22%), Positives = 189/435 (43%), Gaps = 57/435 (13%)

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN 347
           K R L I Q   GSGKT    I +   +     G QA+++ P   LA Q  + I++  + 
Sbjct: 40  KGRDL-IAQAKTGSGKTAAFGIGLLHPLNPRYFGCQALVLCPTRELADQVAKEIRRLARA 98

Query: 348 T-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVD 401
              I V  + G +P   +  +LE   HG AH+I+GT    Q+     +++   L  +++D
Sbjct: 99  ADNIKVLTLCGGVPFGPQIGSLE---HG-AHVIVGTPGRVQEHLRKGTLKVDGLNTLVLD 154

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKT 460
           E  R        L          ++  TP  R TL+ ++     I ++  +   R P + 
Sbjct: 155 EADRM-------LDMGFVDSISEIIEQTPARRQTLLFSATYPAGIEQLAARFL-RTPERV 206

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---NFRSVVERFNSLHEHFTS- 516
            +  ++  D++ +R   + + G++   +   +   ++     F +  ++ + L     + 
Sbjct: 207 EVEAMHDDDQIEQRFYEI-APGQRMQAVSILLRHFRKQPVVAFCATRQQCDELAAQLEAE 265

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             S A +HG +   +++ ++  F N +  +L+AT V   G+D+    ++I  N E    A
Sbjct: 266 KISAAALHGDLEQRERDQILALFANRSLSVLVATDVAARGLDIAGLEMVI--NVELSRDA 323

Query: 575 QLHQLR-GRVGRGEEISSCILLYHPPLSKN------------SYTRLSVLKNTEDGFLIA 621
           ++H  R GR GR  +    + L  PP +              ++  L   K+  +  L  
Sbjct: 324 EVHIHRIGRSGRAGDKGLALSLVAPPEASRAQAIETLQGKTLAWYPLPATKSGGEPLLPP 383

Query: 622 EEDL---KQRKE----GEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAKHILTQD 670
              L     RKE    G+ILG    ++G+P   + +  L D  +L+ + R  A+  L + 
Sbjct: 384 MHTLCIGAGRKEKLRPGDILGALTGEAGIPGDQVGKIALFDYQALVAVQRDVARQALKRL 443

Query: 671 PDLTSVRGQSIRILL 685
            +   ++G+++R+ L
Sbjct: 444 SE-GKIKGRTLRVRL 457


>gi|322614908|gb|EFY11833.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619348|gb|EFY16228.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623160|gb|EFY20002.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628449|gb|EFY25237.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634857|gb|EFY31588.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638578|gb|EFY35273.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640887|gb|EFY37535.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645384|gb|EFY41912.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651731|gb|EFY48103.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654369|gb|EFY50691.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661210|gb|EFY57436.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662662|gb|EFY58869.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667727|gb|EFY63887.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671861|gb|EFY67982.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677094|gb|EFY73158.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680244|gb|EFY76283.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685327|gb|EFY81323.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194310|gb|EFZ79506.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199386|gb|EFZ84480.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323205860|gb|EFZ90823.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323217187|gb|EGA01908.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323227265|gb|EGA11435.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323232049|gb|EGA16156.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234576|gb|EGA18663.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238029|gb|EGA22088.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243370|gb|EGA27389.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246177|gb|EGA30162.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253678|gb|EGA37505.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259111|gb|EGA42757.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260421|gb|EGA44034.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266491|gb|EGA49978.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271215|gb|EGA54642.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 457

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 139/326 (42%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI------ 399
              + G  P   +R +L+       HII+ T     D +Q   +      ILV+      
Sbjct: 105 T--LCGGQPFGAQRDSLQH----APHIIVATPGRLLDHLQKETVSLDALHILVMDEADRM 158

Query: 400 --------VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                   +DE  RF  + R  L   AT P  +   +  + +  +      I+I  +   
Sbjct: 159 LDMGFSDAIDEVIRFAPETRQTLLFSATWPDAIAAISGRVQQQPI-----RIEIDTVDAL 213

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           PA  +           + E I  L+ +LS+ + A  +   +    + + ++V +  N++ 
Sbjct: 214 PAIEQQFFE-----TSVHEKISLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALNAVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 Q---SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELVVNYELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFC 345


>gi|228918066|ref|ZP_04081594.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841546|gb|EEM86662.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 481

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 32/319 (10%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI-SKITEKPAG--RKPIKT 460
             F  Q    + +  T    +L +AT +P  +   S   ++  + I  K AG     I+ 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH 219

Query: 461 VIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            +  + R +E +  LK V + E   +  I  + +E  +  +R + +R N   +       
Sbjct: 220 TLFEV-REEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-DRVNYPCDK------ 271

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      + +H+ 
Sbjct: 272 -IHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRT 330

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       I    P
Sbjct: 331 -GRTGRAGNSGKAITFITP 348


>gi|118586721|ref|ZP_01544158.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
 gi|118432809|gb|EAV39538.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
          Length = 454

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 152/360 (42%), Gaps = 44/360 (12%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG- 321
           K +  I F+ PTK Q+  I  I+           + Q   GSGKT   L+ +  A++   
Sbjct: 16  KAIDGISFNKPTKVQKRIIPPIIAGRDV------VGQSQTGSGKTHAFLLPIFNALDPSL 69

Query: 322 --GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-----ITGNMPQAHRRKALERIAHG 374
              QAVI +P   LA+Q Y+  + + ++   I E      I   +    R K + ++   
Sbjct: 70  EETQAVITSPSRELAEQLYQAFRDFQKSLAAIDENFADLRIADYIGGTDRNKQIRQLERK 129

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           Q  I IGT    +D +    L++     Q+RF V     +         +   A+ +P  
Sbjct: 130 QPQIAIGTPGRLKDFLSKNFLLV----NQNRFFVVDEADMALDMGFLEDVDTIASAMPDN 185

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVII---PINRI-DEVIERLKVVLSEGKKAYWICP 490
           L +         K+T  P  ++ +K  +I   P++ +  + I+   ++ ++ K    +  
Sbjct: 186 LQMLVFSATIPDKLT--PFLKRYMKNPLIEEIPVSTVVADTIDNY-LLATKSKDKNEVIF 242

Query: 491 QIEEKKESN----FRSVVERFNSLHEHFTSS----IAIIHGRMSDIDKESVMDSFKNGTC 542
            +  +KES     F +  ER + L  HF  S    +A +HG +   ++   M   K    
Sbjct: 243 DLLTRKESYLTLVFANTKERVHELA-HFLDSQGLKVAEVHGGIEPRERRRTMKRIKKQEF 301

Query: 543 KLLIATTVIEVGIDVVDASIIIIE----NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + ++AT +   G+D+   S +I +    + E F    +H++ GR GR     + I LY P
Sbjct: 302 QYVVATDLAARGLDIQGVSEVINDDIPTDLEFF----IHRV-GRTGRNGLSGTAITLYGP 356


>gi|238764483|ref|ZP_04625431.1| Primosomal protein N' [Yersinia kristensenii ATCC 33638]
 gi|238697295|gb|EEP90064.1| Primosomal protein N' [Yersinia kristensenii ATCC 33638]
          Length = 732

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENILAQGRQALVLVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
              +  + R     R  +G+A I+IGT  ALF     + +L ++I+DE+H          
Sbjct: 277 HSGLNDSERLSVWLRARNGEAAIVIGTRSALF---TPFSRLGVIIIDEEHDSSYKQQEGW 333

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           R+  +       +     +++ TATP   TL    +G      ++++    KP
Sbjct: 334 RYHARDLAVFRAREEGIPIVMGTATPALETLHNVQMGKYRQLTLSKRAGNAKP 386


>gi|226315226|ref|YP_002775122.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226098176|dbj|BAH46618.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 513

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 189/448 (42%), Gaps = 64/448 (14%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEA 320
           + L N+ F     + +AI+D    ++ + R L I Q   G+GKT    + LI        
Sbjct: 15  RALSNMGFE----EATAIQDQTVPVALQGRDL-IGQAQTGTGKTAAFGIPLIERMDETSG 69

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             Q V++ P   LA Q  E I K  Q   I    I G      + KAL++    +  II+
Sbjct: 70  NIQGVVLTPTRELAVQVAEEINKIAQFKNISALPIYGGQDITRQIKALKK----RPQIIV 125

Query: 381 GTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATP 430
            T   F D     +I+   + +V++DE       G    +K  L +   +   LL +AT 
Sbjct: 126 ATPGRFMDHMRRRTIRLDAIEVVVLDEADEMLNMGFIDDIKEILKEVPESRQTLLFSAT- 184

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           +PR +   +   ++   I +  A     K V +P N   E +E     ++E +K   +C 
Sbjct: 185 MPRAIQEIAQQFMNEPTIIQVKA-----KEVTVP-NIAQEYME-----VAEKQKFDVLCR 233

Query: 491 QIEEKKESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ++         F     R + L E  T        IHG ++   ++SV+  FK GT ++
Sbjct: 234 LLDIHSPELAIIFGRTKRRVDELSEALTKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEV 293

Query: 545 LIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
           L+AT V   G+D+   + +    I +++E +    +H++ GR GR  +    I      +
Sbjct: 294 LVATDVAARGLDISGVTHVFNFDIPQDSESY----VHRI-GRTGRAGKTGLAITF----V 344

Query: 601 SKNSYTRLSVLKNTEDGFL------IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +      L +++ T +  +         E L+ +++  +  I ++     L A   L + 
Sbjct: 345 TSREIDHLRLIERTTNRRMERRAVPSMAEALEGQQKMTVDKILEASGRDDLSAYKTLAEQ 404

Query: 655 LLEIAR-----KDAKHILTQDPDLTSVR 677
           LLE          A  +LT++PD+T VR
Sbjct: 405 LLEDVDSVTLVSAALKLLTKEPDMTPVR 432


>gi|218709165|ref|YP_002416786.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218322184|emb|CAV18298.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 418

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 144/345 (41%), Gaps = 48/345 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT+ Q++ I  I+        +L + Q   GSGKTL   + +  +++      QA+I+ P
Sbjct: 29  PTEIQQAVIPTIIAG----KDVLALAQ--TGSGKTLAFGLPLLNSIKHDVNELQAIIIVP 82

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMP-QAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q  + ++       I    +TG +  +  +++ LE+       ++I T      
Sbjct: 83  TRELASQVAKALEPIATTLDIKTVTLTGGVDIEIQQQQLLEK-----PQLVIATPGRLHA 137

Query: 389 SIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            IQ  KL L     +I+DE  R         VQ  +    K    H  L+ +  +P+ L+
Sbjct: 138 VIQENKLELTQCKSIILDEADRLLDMGFWPDVQTIISALPKK---HQTLLFSATLPKELI 194

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
             +   +             P+K      N +   IE    ++++G KA  +   + +  
Sbjct: 195 SQTEALL-----------VNPVKVTTHQENSVVAAIEETLYLVNKGSKAQALIALLNQHA 243

Query: 497 ESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            S    F    +  ++L +  +    S+  +HG  +  ++E  ++SFKNG  ++LIAT V
Sbjct: 244 WSQVLVFIGAKDNADALTKRLSKAKISVNALHGNKNQEEREQALESFKNGKTRVLIATDV 303

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +  GI +    ++I  +        +H++ GR  R     S I L
Sbjct: 304 MARGIHIDQLPVVINFDLPSHSATYVHRV-GRTARAGSTGSAISL 347


>gi|119582642|gb|EAW62238.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_a [Homo
           sapiens]
 gi|119582646|gb|EAW62242.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_a [Homo
           sapiens]
          Length = 883

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 707

Query: 581 GRVGR 585
           GR GR
Sbjct: 708 GRTGR 712


>gi|58579226|ref|YP_197438.1| primosomal protein N' [Ehrlichia ruminantium str. Welgevonden]
 gi|58417852|emb|CAI27056.1| Primosomal protein N' [Ehrlichia ruminantium str. Welgevonden]
          Length = 664

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 10/176 (5%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EA 320
           +K   +I  + +  Q+ A  +I+  +S  + +L  L G+ GSGKT V    +   V  + 
Sbjct: 126 KKYSSDIKINLSDVQKQAYNNIIGKISSYSVIL--LDGETGSGKTEVYCEVIRELVTRDN 183

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             Q +++ P  +L  Q  + IK Y +N    VE    N+    RR+    IA+GQ+ I+I
Sbjct: 184 TAQVLVLLPEIVLTLQLIKRIKYYFEN-YFPVEW-HSNLTVKSRREYWLSIAYGQSSIVI 241

Query: 381 GTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           G   ALF   + +  L ++IVDE+H    +Q   +   A    ++L     IP  L
Sbjct: 242 GARSALF---LPFKNLKMIIVDEEHDASFKQDYGVIYNARDMSIVLAKQFNIPVIL 294


>gi|119947001|ref|YP_944681.1| 23S rRNA (Gm2251)-methyltransferase [Psychromonas ingrahamii 37]
 gi|119865605|gb|ABM05082.1| ATP-dependent DNA helicase RecQ [Psychromonas ingrahamii 37]
          Length = 636

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 135/321 (42%), Gaps = 55/321 (17%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            GSGK+L   +    A+      ++++P+  L Q   EF+    Q+  I    I      
Sbjct: 37  TGSGKSLCYQLP---ALHLPHLTLVVSPLLALIQDQLEFL----QSKGISAASIHSLQTP 89

Query: 362 AHRRKALERIAHGQAHII-IGTHALFQDSIQYY----KLILVIVDEQH---RFGVQQR-- 411
           A   +  + IA GQ  I+ I    L  +  + +     + L++VDE H    +G   R  
Sbjct: 90  AESSQVYKDIAGGQVKILFISVERLNSERFRLFLKKIPISLLVVDEAHCISEWGHNFRPD 149

Query: 412 -LKLT---QKATAPHVLLMTATPIPRTLVLTSLGD---IDISKITEKPAGRKPIKTVIIP 464
            LKL    ++   P VLL+TAT   +  V+  +G+   ID   IT   + R  +   ++ 
Sbjct: 150 YLKLALYRREFNIPQVLLLTATATQK--VIADMGNKFAIDADNITLTGSYRANLNLSVLG 207

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---I 518
           +   D    +L  +L          P ++++K+     + ++ +    + +  +SS    
Sbjct: 208 VGSFD----KLNTLL----------PWLDDRKQQAGIIYVTLQKTAEEVAKQLSSSGVPA 253

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ--- 575
              H  M+   ++S+   F +G   L++AT    +GID  D   ++     H+ L +   
Sbjct: 254 QAYHAGMNGEQRQSIQQQFMSGELPLIVATIAFGMGIDKSDIGFVV-----HYDLPKSIE 308

Query: 576 -LHQLRGRVGRGEEISSCILL 595
              Q  GR GR    + C++L
Sbjct: 309 NYAQEIGRAGRDGRPADCLVL 329


>gi|89075188|ref|ZP_01161619.1| primosome assembly protein PriA [Photobacterium sp. SKA34]
 gi|89049010|gb|EAR54577.1| primosome assembly protein PriA [Photobacterium sp. SKA34]
          Length = 733

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 21/152 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   + AG QA+I+ P IG+  Q    F +++     + +E +
Sbjct: 221 LLEGVTGSGKTEVYLNLLEPVLAAGKQALILVPEIGLTPQTINRFRRRFN----VPLETV 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              +  + R  A       QA IIIGT  ALF     +  L ++IVDE+H    +Q+  L
Sbjct: 277 HSGLNDSERMAAWLAGRDNQAGIIIGTRSALF---TPFANLGIIIVDEEHDASYKQQDSL 333

Query: 415 -----------TQKATAPHVLLMTATPIPRTL 435
                        K   P ++L +ATP   TL
Sbjct: 334 RYHARDLAVMRANKENIP-IILGSATPALETL 364


>gi|30265472|ref|NP_847849.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47531039|ref|YP_022388.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188291|ref|YP_031544.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|65317435|ref|ZP_00390394.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|165872531|ref|ZP_02217164.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167636244|ref|ZP_02394547.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167641411|ref|ZP_02399661.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170689199|ref|ZP_02880396.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|170708677|ref|ZP_02899116.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177651890|ref|ZP_02934473.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190568924|ref|ZP_03021826.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|218906634|ref|YP_002454468.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|228930460|ref|ZP_04093460.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228949176|ref|ZP_04111444.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229124957|ref|ZP_04254131.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 95/8201]
 gi|229600530|ref|YP_002869663.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254687105|ref|ZP_05150963.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254724112|ref|ZP_05185897.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. A1055]
 gi|254733618|ref|ZP_05191335.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254742162|ref|ZP_05199849.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Kruger B]
 gi|254755928|ref|ZP_05207960.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Vollum]
 gi|254761640|ref|ZP_05213660.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Australia 94]
 gi|30260150|gb|AAP29335.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47506187|gb|AAT34863.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49182218|gb|AAT57594.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|164711754|gb|EDR17298.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167510586|gb|EDR85982.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167528359|gb|EDR91130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170126459|gb|EDS95347.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|170666842|gb|EDT17608.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|172082594|gb|EDT67658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190559991|gb|EDV13974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|218536757|gb|ACK89155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|228658458|gb|EEL14124.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 95/8201]
 gi|228810459|gb|EEM56812.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228829179|gb|EEM74816.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229264938|gb|ACQ46575.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
          Length = 481

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 32/319 (10%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI-SKITEKPAG--RKPIKT 460
             F  Q    + +  T    +L +AT +P  +   S   ++  + I  K AG     I+ 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH 219

Query: 461 VIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            +  + R +E +  LK V + E   +  I  + +E  +  +R + +R N   +       
Sbjct: 220 TLFEV-REEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-DRVNYPCDK------ 271

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      + +H+ 
Sbjct: 272 -IHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRT 330

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       I    P
Sbjct: 331 -GRTGRAGNSGKAITFITP 348


>gi|327438664|dbj|BAK15029.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 410

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 131/308 (42%), Gaps = 34/308 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKTL   + +   V+      QA+I+AP   LA Q  E I+ +T  T I V+
Sbjct: 38  VAESPTGSGKTLAYTLPILNKVDGNKKQTQALIVAPSQELAMQIVEVIRDWTAGTDITVQ 97

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE-----Q 403
            + G    A + + L++    +  I++GT     +  +  KL L     +++DE      
Sbjct: 98  QLIGGANSARQIEKLKK----KPTIVVGTPGRLNELARQGKLKLKEIETIVLDECDQLLS 153

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             + V  +  +   A    V++++AT      ++      +   I  KP        V+ 
Sbjct: 154 REYRVVVKSFIENAAFGRQVVVVSATITEEIKLVAERLMFEPISIEIKPEDMVKFGKVVH 213

Query: 464 PINRIDE-----VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
              +++E     ++ RL  +  EG +             +N   V+ + N L E+  + I
Sbjct: 214 SFVKVEERDKTDMLRRLANI--EGLRGLAFV--------NNIDQVLMKQNKL-EYRDAPI 262

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +H  M   +++  +D+F+ G  ++LIAT +   G+D+   + +I  +     + Q   
Sbjct: 263 VALHSDMKKDERKKALDAFRKGEARILIATDIAARGLDISGLTHVIHVDVPRT-IEQYTH 321

Query: 579 LRGRVGRG 586
             GR GR 
Sbjct: 322 RSGRTGRA 329


>gi|27262288|gb|AAN87425.1| ATP-dependent DNA helicase recQ [Heliobacillus mobilis]
          Length = 542

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 10/131 (7%)

Query: 475 LKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSSIAIIHGR----MSD 527
             VV  E KK + I   I E KE     + +  +  ++L+E F     I  G+    +SD
Sbjct: 156 FSVVRGENKKDF-ILKYISENKERAGIIYAATRKEVDNLYE-FLRRKGITSGKYHAGLSD 213

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
           +++ S  D+F     ++++AT    +GID  +   +I  N     +   +Q  GR GR  
Sbjct: 214 LERSSGQDAFLYDNIRVMVATNAFGMGIDKSNVRFVIHYNMPK-NMESYYQEAGRAGRDG 272

Query: 588 EISSCILLYHP 598
           E   CILLY P
Sbjct: 273 EPGECILLYSP 283


>gi|15675529|ref|NP_269703.1| ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|71911177|ref|YP_282727.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
 gi|13622729|gb|AAK34424.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|71853959|gb|AAZ51982.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
          Length = 447

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 132/314 (42%), Gaps = 29/314 (9%)

Query: 302 VGSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +       +A  Q VI AP   LA Q ++  K+  ++ Q   EI   N
Sbjct: 47  TGSGKTHTFLLPIFEKLDEAKAEVQVVITAPSRELATQIFDACKQIAKHFQ--EEIRLAN 104

Query: 359 -MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRL 412
            +    + + +E++   Q HI+IGT     D ++      +K    +VDE         L
Sbjct: 105 YVGGTDKLRQIEKLKDSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFL 164

Query: 413 KLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               K  A       +L+ +AT IP+ L         + K    P   + IKT  +  + 
Sbjct: 165 DTVDKIAASLPKSVQILVFSAT-IPQKLQPF------LKKYLTNPVIEQ-IKTKTVIADT 216

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGR 524
           ID  +   K     G+    I   ++      F +  ER + LH   T++   +A IHG 
Sbjct: 217 IDNWLVSTKGRDKNGQ-LLEILKTMQPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGG 275

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +   +++ +M+  K    + ++AT +   GID+   S +I +         +H++ GR G
Sbjct: 276 IPPRERKRIMNQVKKLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTG 334

Query: 585 RGEEISSCILLYHP 598
           R     + I LY P
Sbjct: 335 RNGMAGTAITLYQP 348


>gi|89894521|ref|YP_518008.1| hypothetical protein DSY1775 [Desulfitobacterium hafniense Y51]
 gi|89333969|dbj|BAE83564.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 739

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 6/130 (4%)

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESN--FRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
           +L  +  E KK +     ++ + ES   + +  +  + L  +       +   H  MSD+
Sbjct: 218 KLSTLKGENKKVFISTYCLQHRSESGIIYAATRKEVDQLQTYLKGKGLLVGKYHAGMSDL 277

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++   ++F      L++AT    +GID  +   +I  N     +   +Q  GR GR  E
Sbjct: 278 DRQKAQEAFLYDKTPLMVATNAFGMGIDKSNVRFVIHYNMPK-NMEAYYQEAGRAGRDGE 336

Query: 589 ISSCILLYHP 598
            + CILL+ P
Sbjct: 337 PAECILLFAP 346


>gi|322806278|emb|CBZ03846.1| ATP-dependent RNA helicase BA2475 [Clostridium botulinum H04402
           065]
          Length = 376

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 142/326 (43%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I +   G+GKTL  L+ M   +       Q +I+ P   LA Q  E   K  +   + + 
Sbjct: 43  IAEAQTGTGKTLAFLLPMFENISPDIDAIQGLIITPTRELAIQITEEAMKLKEAKDLNIL 102

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRFGV 408
              G      + K L+       H++I T       L ++++ +  L  +++DE      
Sbjct: 103 ATYGGKDIGSQIKKLK----NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDE-----A 153

Query: 409 QQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
            + L +  K     ++    TP  R TL  ++  + ++ K+  K   R P K +II    
Sbjct: 154 DEMLLMGFKNDVRSII--ENTPRKRQTLCFSATMNSEVKKLAYKNM-RDP-KLIIIEKEE 209

Query: 468 IDEVIERLKVVL---SEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS--- 516
           +   ++ +K VL   ++ +K   +C  ++E  E+ F +++      R ++L E       
Sbjct: 210 V--TLKNIKQVLIETTDRRKQEDLCKILDE--ENPFMAIIFCRTKRRVDTLEEALYKKGY 265

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFG 572
           +   +HG ++   +E +M SFKN   + LIAT V   G+D+   + +    I ENAE + 
Sbjct: 266 NCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARGLDITGVTHVFNYDIPENAESY- 324

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
              +H++ GR GR  E     L   P
Sbjct: 325 ---IHRI-GRTGRAGEKGYTFLFVAP 346


>gi|307720439|ref|YP_003891579.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978532|gb|ADN08567.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 518

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 150/357 (42%), Gaps = 45/357 (12%)

Query: 264 KILRNIPFS----PTKSQESAIKDILQ--DMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +IL+++ F+    P+  Q  AI  IL+  DM        + Q   G+GKT    + + + 
Sbjct: 29  EILKSVKFAGFTIPSPIQAQAIPIILEGRDM--------VGQAHTGTGKTAAFSLPVLSN 80

Query: 318 VEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           ++  G  + +++ P   LA Q  + I KY +N  +    + G    +  ++ L+ I  G 
Sbjct: 81  MKLDGSVEMLVITPTRELATQVSDEIFKYGRNLGVKTVTVYGG---SSYKRQLDLIGRG- 136

Query: 376 AHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
           A +++ T     D ++   L        +L   DE    G    +    +   T    LL
Sbjct: 137 ASVVVATPGRMLDLLKRNMLNNFAPSVVVLDEADEMLDMGFLDDINEIFSYLPTNRQTLL 196

Query: 426 MTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKT--VIIPINRIDEVIERLKVVLSE 481
            +AT P P + L    L D     IT+       I+    +I  +  D+ I RL +   +
Sbjct: 197 FSATMPQPIKNLANRILKDPAFVSITKGETTNTDIEQEYYVIDEHERDDAIIRL-MDAED 255

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            KKA   C           +S V+R +++  +       +HG M    +E+V+  FKN +
Sbjct: 256 TKKAVVFC---------RTKSEVDRLSNVLSNAGYLANGLHGDMEQRQRETVIKGFKNDS 306

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            K+L+AT V   GI V + S +   +      + +H++ GR GR       I L  P
Sbjct: 307 VKVLVATDVAARGIHVNNISHVFNYHIPFDPESYVHRI-GRTGRAGTKGKAITLLTP 362


>gi|225679862|gb|EEH18146.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Paracoccidioides brasiliensis Pb03]
          Length = 615

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 147/365 (40%), Gaps = 69/365 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------------E 319
           P+  Q +AI   LQ     NR L I     GSGKT   L+ +   +              
Sbjct: 197 PSPIQRAAIPIALQ-----NRDL-IGVAVTGSGKTAAFLLPLLVYIGELPRLDEFEWRRN 250

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAH---GQ 375
            G  A+I+AP   LAQQ     KK++      +V I+ G+        +LE  A+     
Sbjct: 251 DGPYAIILAPTRELAQQIEIEAKKFSTPLGFNVVSIVGGH--------SLEEQAYSLRNG 302

Query: 376 AHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKL------------- 414
           A III T     D I+   ++L     VI+DE  R    G ++ +               
Sbjct: 303 AEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVANEKPD 362

Query: 415 TQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           T+ A  P  +        R   T++ T+     + +I  K   R  I T+      +D V
Sbjct: 363 TEDAENPQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNVGEAVDTV 422

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----------SIAII 521
            +R++ V  E K+   +   +  ++   FR  +  F ++  +  +          S   +
Sbjct: 423 EQRVEFVSGEDKRKKRLAEILASRE---FRPPIIVFVNIKRNCDAVARDIKNMGYSSVTL 479

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG  +   +E+ + S +NG   +L+AT +   GIDV D S+++  N      +  H++ G
Sbjct: 480 HGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRI-G 538

Query: 582 RVGRG 586
           R GR 
Sbjct: 539 RTGRA 543


>gi|85859652|ref|YP_461854.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
 gi|85722743|gb|ABC77686.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
          Length = 413

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 9/71 (12%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQL 576
           IHG     ++ SVM  FK G C LLIAT V   GID+ D + +I     E AE++    +
Sbjct: 275 IHGEKDQAERTSVMRKFKEGECNLLIATDVSARGIDIPDVNYVINYDLPEKAENY----V 330

Query: 577 HQLRGRVGRGE 587
           H++ GR GRG+
Sbjct: 331 HRV-GRTGRGD 340


>gi|66555009|ref|XP_395774.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Apis
           mellifera]
          Length = 566

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 139/338 (41%), Gaps = 43/338 (12%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     + +        G  A+++AP   LAQQ  +    +  ++ I   
Sbjct: 153 TGSGKTLSYILPAIVHINSQPKLGRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIRNT 212

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G  P+  + + L+    G   I+I T     D ++  +  L     +++DE  R   
Sbjct: 213 CLYGGAPKGAQARDLD----GGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLD 268

Query: 407 -GVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            G + ++ K+ ++       LM +   P+ +       L     I++  + +  A    +
Sbjct: 269 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKNLAEDFLKDYAQINVGSL-QLAANHNIL 327

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----ESNFRSVVERFNSLHEHF 514
           +  II + +  E   +L  +L E      I  + E K     E+  R  V+      +  
Sbjct: 328 Q--IIDVCQDYEKENKLSTLLKE------IMAESENKTIVFIETKRR--VDEITRKMKRD 377

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 IHG  +  +++ V+  F++G   +L+AT V   G+DV D   +I  +       
Sbjct: 378 GWPAVCIHGDKTQQERDWVLQDFRSGKAPILVATDVAARGLDVEDVKFVINFDYPSCSED 437

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +H++ GR GR ++  +    + P  S  +   + VLK
Sbjct: 438 YVHRI-GRTGRRQKTGTAYTFFTPNNSNKANDLIQVLK 474


>gi|55821673|ref|YP_140115.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55823593|ref|YP_142034.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55737658|gb|AAV61300.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55739578|gb|AAV63219.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 447

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 134/313 (42%), Gaps = 27/313 (8%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +   +       Q VI AP   LA Q Y+  K+  +++   + ++   
Sbjct: 47  TGSGKTHTFLLPIFEKLNPESRDVQVVITAPSRELATQIYQSTKQIAKHSDTEIRVVN-Y 105

Query: 359 MPQAHRRKALERIAHGQAHIIIGT----HALFQD-SIQYYKLILVIVDEQHRFGVQQRLK 413
           +    +++ +E++   Q HI+IGT    + LF+   +  +K    +VDE         L 
Sbjct: 106 VGGTDKQRQIEKLKVAQPHIVIGTPGRIYDLFKSGDLAIHKAHTFVVDEADMTMDMGFLA 165

Query: 414 LTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
              K  A       +L+ +AT IP+ L         + K    P   + IKT  +  + I
Sbjct: 166 TVDKIAASLPKEVQILVFSAT-IPQKLQPF------LKKYLTNPVMEQ-IKTSTVIADTI 217

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRM 525
           D  +   K     G+    +   ++      F +  ER + LH +  S+   +A IHG +
Sbjct: 218 DNWLVSTKGRNKNGQ-ILEMLKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGI 276

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +++ +M+  K    + ++AT +   GID+   S +I +         +H++ GR GR
Sbjct: 277 PPRERKRIMNQVKKLEFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGR 335

Query: 586 GEEISSCILLYHP 598
                + I LY P
Sbjct: 336 NGLSGTAITLYQP 348


>gi|15618758|ref|NP_225044.1| SWI/SNF family helicase_2 [Chlamydophila pneumoniae CWL029]
 gi|16752190|ref|NP_445557.1| SNF2 family helicase [Chlamydophila pneumoniae AR39]
 gi|33242209|ref|NP_877150.1| swf/snf helicase [Chlamydophila pneumoniae TW-183]
 gi|4377165|gb|AAD18987.1| SWI/SNF family helicase_2 [Chlamydophila pneumoniae CWL029]
 gi|8163540|gb|AAF73724.1| helicase, Snf2 family [Chlamydophila pneumoniae AR39]
 gi|33236720|gb|AAP98807.1| swf/snf helicase [Chlamydophila pneumoniae TW-183]
          Length = 1166

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 18/148 (12%)

Query: 297 ILQGDVGSGKTLVALIAMA-AAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL A+IA+  + +E G G ++I+ P  ++     EF +K+  N +    +
Sbjct: 724 ILADDMGLGKTLQAIIAVTQSKLEKGSGCSLIVCPTSLVYNWKEEF-RKF--NPEFRTLV 780

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK---LILVIVDEQHRFGVQQR 411
           I G +P + RRK L  +A     + I ++ L Q  ++ YK      V++DE H   ++ R
Sbjct: 781 IDG-VP-SQRRKQLTALA--DRDVAITSYNLLQKDVELYKSFRFDYVVLDEAHH--IKNR 834

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL 435
                K+     + H L++T TPI  +L
Sbjct: 835 TTRNAKSVKMIQSDHRLILTGTPIENSL 862


>gi|116628386|ref|YP_821005.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116101663|gb|ABJ66809.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus
           LMD-9]
          Length = 447

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 134/313 (42%), Gaps = 27/313 (8%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +   +       Q VI AP   LA Q Y+  K+  +++   + ++   
Sbjct: 47  TGSGKTHTFLLPIFEKLNPESRDVQVVITAPSRELATQIYQSTKQIAKHSDTEIRVVN-Y 105

Query: 359 MPQAHRRKALERIAHGQAHIIIGT----HALFQD-SIQYYKLILVIVDEQHRFGVQQRLK 413
           +    +++ +E++   Q HI+IGT    + LF+   +  +K    +VDE         L 
Sbjct: 106 VGGTDKQRQIEKLKVAQPHIVIGTPGRIYDLFKSGDLAIHKAHTFVVDEADMTMDMGFLA 165

Query: 414 LTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
              K  A       +L+ +AT IP+ L         + K    P   + IKT  +  + I
Sbjct: 166 TVDKIAASFPKEVQILVFSAT-IPQKLQPF------LKKYLTNPVMEQ-IKTSTVIADTI 217

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRM 525
           D  +   K     G+    +   ++      F +  ER + LH +  S+   +A IHG +
Sbjct: 218 DNWLVSTKGRNKNGQ-ILEMLKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGI 276

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +++ +M+  K    + ++AT +   GID+   S +I +         +H++ GR GR
Sbjct: 277 PPRERKRIMNQVKKLEFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGR 335

Query: 586 GEEISSCILLYHP 598
                + I LY P
Sbjct: 336 NGLSGTAITLYQP 348


>gi|321313476|ref|YP_004205763.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|320019750|gb|ADV94736.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
          Length = 479

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 147/349 (42%), Gaps = 44/349 (12%)

Query: 260 KIAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALI 312
           +I+  ILR +       PTK Q+S I   L+      R   +++   GSGKT    + L 
Sbjct: 8   QISHDILRALEGLGYTEPTKVQQSVIPAALE------RKDLVVKSQTGSGKTASFGIPLC 61

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            +A   E   QA+I+ P   LA Q  E I    +  +I    + G      ++  L++  
Sbjct: 62  ELANWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQ-- 119

Query: 373 HGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             ++HI++GT     D I+   L L     +++DE         +   ++  A    ++ 
Sbjct: 120 --KSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEM---LNMGFIEQVEA----IIK 170

Query: 428 ATPIPRTLVLTSLG-DIDISKITEKPAGRKP----IKTVIIPINRIDEVIERLKVVLSEG 482
             P  RT +L S     DI K++ +   +KP    IK   +    I+  + +++    E 
Sbjct: 171 HLPTERTTMLFSATLPQDIEKLSRQYM-QKPEHIEIKAAGLTTRNIEHAVIQVR---EEN 226

Query: 483 KKAYWICPQIEEKKESN--FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSF 537
           K +      + E  +S   F    E  N L +           IHG M   D+  VM+ F
Sbjct: 227 KFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEF 286

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           K G  + L+AT V   GID+ + S++I  +      + +H+  GR GR 
Sbjct: 287 KRGEYRYLVATDVAARGIDIENISLVINYDLPVEKESYVHRT-GRTGRA 334


>gi|221118846|ref|XP_002163229.1| PREDICTED: similar to Eukaryotic initiation factor 4A-II [Hydra
           magnipapillata]
          Length = 409

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 132/293 (45%), Gaps = 46/293 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+++AP   LAQQ  + I       ++ V 
Sbjct: 77  IAQAQSGTGKTATFSIAILQKLDLSNFNAQALVLAPTRELAQQIQKVIMALGDYQKVKVH 136

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G +     R+ L+ +  G  H+++GT           AL  DS++ +  IL   DE 
Sbjct: 137 ---GCIGGTAVRQDLDVLNAG-VHVVVGTPGRVFDMISRGALNTDSLKMF--ILDEADEM 190

Query: 404 HRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++     +  ++  V+L++AT +P           D+ ++T++   R PI   
Sbjct: 191 LSRGFKDQIYDVFRRLPSSIQVILLSAT-MPD----------DVLEVTKRFM-RDPIN-- 236

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-------FRSVVERFNSLHEHF 514
            I + + +  +E +K      +K  W    + +  ++        F +   + + L E  
Sbjct: 237 -ILVKKEELTLEGIKQFFINVEKEEWKLETLTDLYDTMTITQAVIFLNTRRKVDWLKEKL 295

Query: 515 TS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 296 NEKLFTVSSMHGDMDQSERDLIMKEFRSGSSRVLITTDLLARGIDVQQVSLVI 348


>gi|212007716|gb|ACJ22452.1| putative eukaryotic translation initiation factor 4A [Porphyra
           yezoensis]
          Length = 408

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 144/339 (42%), Gaps = 54/339 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  Q+ AI  ++Q+         I Q   G GKT    I +   ++      QA+I+AP
Sbjct: 74  PSAIQQRAIMPLIQNRDT------IAQAQSGMGKTATFSIGVLQNIDTSVRKVQALILAP 127

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA---HIIIGTHALF 386
              LAQQ ++ ++  +    I      G        + +E +   Q+   H+++GT    
Sbjct: 128 TRELAQQIHKVVQTLSDFMSISCHACIGGT------RVMEDVRVFQSETPHVVVGTPGRV 181

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRL-KLTQKATAPHVLLMTATPIPRTLVL 437
            D IQ   L         L   DE    G ++++ ++ Q   A   + + +  +P     
Sbjct: 182 FDMIQRRALDTGSIKAFCLDEADEMLSRGFKEQIYEIFQFMPATCQVGLFSATMPD---- 237

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKK 496
                 D+ ++T+K   R PI+ ++       E I++  V +  E  K   +C   E   
Sbjct: 238 ------DVLEMTQKFM-RDPIRILVKKDELTLEGIKQFYVAVEREDWKLETLCDLYETLN 290

Query: 497 ------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  +N R  VE   +       +++ +HG M   D++ +M  F+ G+ ++LI T +
Sbjct: 291 ITQSIIYTNTRRKVEWLVAKMNERDFTVSSLHGDMDQKDRDIIMREFRTGSTRVLITTDL 350

Query: 551 IEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
           +  GIDV   S+++      N E++    +H++ GR GR
Sbjct: 351 LARGIDVQQVSLVVNYDLPTNKENY----IHRI-GRSGR 384


>gi|295689355|ref|YP_003593048.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295431258|gb|ADG10430.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 732

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 138/322 (42%), Gaps = 44/322 (13%)

Query: 302 VGSGKTLVALIAMA----AAVEAGGQA-----VIMAPIGILAQQ-HYEFIKKYTQNTQII 351
            GSGKT+   +A A       E  GQA     +++AP   LA Q + E    Y +   ++
Sbjct: 45  TGSGKTVAFGLAAAPTLLGEAETFGQAAEPLALVIAPTRELAMQVNRELTWLYAEAKAVV 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRF 406
           V  + G M     ++AL    +G AHI++GT    +D I+       KL + ++DE    
Sbjct: 105 VNCV-GGMDARREQRALN---YG-AHIVVGTPGRLRDHIERGHLDLSKLQVAVLDEADEM 159

Query: 407 ---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
              G ++ L+          +L  A P  RTL+ ++    DI ++ ++      ++   I
Sbjct: 160 LDMGFREDLEF---------ILDAAPPERRTLLFSATLARDIVELAKR-YQNDAVRIDTI 209

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQI---EEKKESNFRSVVERFNSLHEHFTS---S 517
             N     IE   V ++  +  + +   +   E      F +  E    LH        +
Sbjct: 210 GRNEPHRDIEYRAVRVAPNEVEHAVVNLLRFFEAPGALVFANTRESVRGLHNKLRERGFA 269

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE-HFGLAQL 576
           +  + G +S  ++   + + ++G  ++ +AT V   G+D+ D  ++I  +AE     A L
Sbjct: 270 VVGLSGELSQRERADALQALRDGHARVCVATDVAARGLDLPDLGLVI--HAELPINKATL 327

Query: 577 HQLRGRVGRG--EEISSCILLY 596
               GR GR   + +S+ ++ Y
Sbjct: 328 LHRSGRTGRAGKKGVSALVVPY 349


>gi|291406387|ref|XP_002719528.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 1
           [Oryctolagus cuniculus]
          Length = 535

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 126/314 (40%), Gaps = 47/314 (14%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER       I I T 
Sbjct: 91  CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 146

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF---GVQ------------QRLKLTQKATAPHV 423
               D ++  K  L     +++DE  R    G +             R  L   AT P  
Sbjct: 147 GRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 206

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII--PINRIDEVIERLKVVLSE 481
           +   A    +  +  ++G +++S      A    ++ V +   + + +++I  ++ ++SE
Sbjct: 207 VRQLAEDFLKDYIHINIGALELS------ANHNILQIVDVCHDVEKDEKLIRLMEEIMSE 260

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
                      +E K   F     R + L             IHG  S  +++ V++ FK
Sbjct: 261 -----------KENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 309

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    + P
Sbjct: 310 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTFFTP 368

Query: 599 PLSKNSYTRLSVLK 612
              K     +SVL+
Sbjct: 369 NNIKQVSDLISVLR 382


>gi|269140774|ref|YP_003297475.1| primosomal protein N (replication factor Y) - superfamily II
           helicase [Edwardsiella tarda EIB202]
 gi|267986435|gb|ACY86264.1| primosomal protein N (replication factor Y) - superfamily II
           helicase [Edwardsiella tarda EIB202]
 gi|304560534|gb|ADM43198.1| Helicase PriA [Edwardsiella tarda FL6-60]
          Length = 731

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ Q   + V+++
Sbjct: 220 LLAGVTGSGKTEVYLSIIENLLARGRQALVLVPEIGLTPQT----IARFRQRFSVPVDVL 275

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              +    R  A  R   G++ I+IGT  ALF     + +L  +I+DE+H    +Q+   
Sbjct: 276 HSGLNDGERLAAWLRARDGESAIVIGTRSALF---TPFARLGGIIIDEEHDGSYKQQEGW 332

Query: 415 TQKATAPHVLLMTATPIP-----RTLVLTSLGDIDISK-----ITEKPAGRKP 457
              A    VL      IP      T  L +L ++D+ K     +T++    KP
Sbjct: 333 RYHARDLAVLRARLEDIPIVLGSATPALETLHNVDVGKYRRLCLTQRAGNAKP 385


>gi|194445037|ref|YP_002040904.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403700|gb|ACF63922.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 457

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 137/326 (42%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVSLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI------ 399
              + G  P   +R +L+       HII+ T     D +Q   +      ILV+      
Sbjct: 105 T--LCGGQPFGAQRDSLQH----APHIIVATPGRLLDHLQKETVSLDALHILVMDEADRM 158

Query: 400 --------VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                   +DE  RF    R  L   AT P  +   +  + +  +      I+I  +   
Sbjct: 159 LDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPI-----RIEIDTVDAL 213

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           PA  +             E I  L+ +LS+ K A  +   +    + + ++V +  N++ 
Sbjct: 214 PAIEQQFFE-----TSAHEKISLLQTLLSQHKPASCV---VFCNTKKDCQAVCDALNAVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 Q---SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELVVNYELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFC 345


>gi|167035770|ref|YP_001671001.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166862258|gb|ABZ00666.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 443

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 130/287 (45%), Gaps = 35/287 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHI 378
           +A+++ P   LA+Q +  +++Y +N  +    + G +   PQ  R R+ ++ +      +
Sbjct: 76  RALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMRLRRGVDLLVATPGRL 135

Query: 379 IIGTHALF-QDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP---HVLLMTATPI 431
           +     LF Q+++++ ++  +++DE  R    G  + L+ +  A  P     LL +AT  
Sbjct: 136 L----DLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQ-SVYAALPRKRQTLLFSATFS 190

Query: 432 PRTLVLTSLGDIDISKITEKP--AGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYW 487
            +  VL  L   D   I   P  A    +K  ++P++  R +++   L       +K  W
Sbjct: 191 DQIRVLAGLALNDPLSIEVSPRNATATSVKQWLVPVDKKRKEDLFCHLL------RKQRW 244

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
               +  K  +    +V+R   L E   +    IHG      ++  +DSFK    ++L+A
Sbjct: 245 TQVLVFAKTRNGVDQLVQRL--LAEGVNADG--IHGDRPQATRQRALDSFKAREVQVLVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
           T V   G+D+ D  +++  +        +H++ GR GR    GE IS
Sbjct: 301 TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRI-GRTGRAGNKGEAIS 346


>gi|146305516|ref|YP_001185981.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina ymp]
 gi|145573717|gb|ABP83249.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina ymp]
          Length = 458

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 172/424 (40%), Gaps = 62/424 (14%)

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN 347
           K R L I Q   GSGKT    I +   +     G QA+++ P   LA Q  + I++  + 
Sbjct: 40  KGRDL-IAQAKTGSGKTAAFGIGLLHPLNPRYFGCQALVLCPTRELADQVAKEIRRLARA 98

Query: 348 T-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVD 401
              I V  + G +P   +  +LE   HG AH+I+GT    Q+     +++   L  +++D
Sbjct: 99  ADNIKVLTLCGGVPFGPQIGSLE---HG-AHVIVGTPGRIQEHLRKGTLKVDGLNTLVLD 154

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKT 460
           E  R        L          ++  TP  R TL+ ++     I ++  +   R P + 
Sbjct: 155 EADRM-------LDMGFVDSISEIIEQTPARRQTLLFSATYPAGIEQLAARFL-RTP-ER 205

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---NFRSVVERFNSLHEHFTS- 516
           V +     D  IE+    ++ G++   +   +   ++     F +  ++ + L     + 
Sbjct: 206 VEVEAQHDDGQIEQRFYEIAPGQRMEAVSTLLRHFRKQPVVAFCATRQQCDELAAQLEAE 265

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             S A +HG +   D++ ++  F N +  +L+AT V   G+D+    ++I  N E    A
Sbjct: 266 KISAAALHGDLEQRDRDQILALFANRSLSVLVATDVAARGLDIAGLEMVI--NVELSRDA 323

Query: 575 QLHQLR-GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG-- 631
           ++H  R GR GR  E    + L  P                E G   A E L+ R+    
Sbjct: 324 EVHIHRIGRSGRAGEKGLALSLVAP---------------AEAGRAQAIETLQGRELAWY 368

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------ILTQDPDLTSVRGQSIRILL 685
            +   K SG P      P +H   +   RKD          LT D  L     Q  +I L
Sbjct: 369 PLPAAKASGEPLL----PPMHTLCIAAGRKDKLRPGDILGALTGDAGLPG--SQVGKIAL 422

Query: 686 YLYQ 689
           + YQ
Sbjct: 423 FDYQ 426


>gi|134299559|ref|YP_001113055.1| primosomal protein N' [Desulfotomaculum reducens MI-1]
 gi|134052259|gb|ABO50230.1| replication restart DNA helicase PriA [Desulfotomaculum reducens
           MI-1]
          Length = 732

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 9/139 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           TK Q  A+ +I Q ++ +     +L G  GSGKT + L  +   ++   QA+++ P I +
Sbjct: 195 TKEQSFAVGEICQALTAEKPSAWLLHGVTGSGKTEIYLRIIQDVLKINRQAIVLVPEIAL 254

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q  + F  +Y       V ++   + Q  R     RI  G A +++GT  A+F  +  
Sbjct: 255 TPQMVHRFKTRYGNQ----VALLHSGLSQGERYAEKVRIRSGTAKVVLGTRSAVFAPTPN 310

Query: 392 YYKLILVIVDEQHRFGVQQ 410
              L ++I+DE+H    +Q
Sbjct: 311 ---LGVIIIDEEHESSYKQ 326


>gi|322701035|gb|EFY92786.1| cell cycle control protein [Metarhizium acridum CQMa 102]
          Length = 397

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 143/361 (39%), Gaps = 89/361 (24%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLR--------------------------- 296
           K L ++P    +S      D   DMS K  +LR                           
Sbjct: 5   KGLEDVPEGQIESNYDETVDSFDDMSLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDV 64

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +        +   
Sbjct: 65  IAQAQSGTGKTATFSISVLQKIDPTVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECH 124

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        KAL+        +++GT     D IQ   L        +L   DE   
Sbjct: 125 ACIGGTSVRDDMKALQ----DGPQVVVGTPGRVHDMIQRRFLKTDAMKMFVLDEADEMLS 180

Query: 406 FGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G   ++    +L  ++T   V+L++AT +P+          D+ ++T +   R P++ +
Sbjct: 181 RGFTDQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTRFM-RDPVRIL 226

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------R 506
           +    + DE+         EG K ++I  + EE K      + E               +
Sbjct: 227 V----KKDELT-------LEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 275

Query: 507 FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L E  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++
Sbjct: 276 VDWLTEKLTARDFTVSAMHGDMDQTQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 335

Query: 564 I 564
           I
Sbjct: 336 I 336


>gi|289663283|ref|ZP_06484864.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 640

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 134/322 (41%), Gaps = 41/322 (12%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + +++ A   +   QA+++AP   LA Q  E  +KY +      V  
Sbjct: 52  QAQTGTGKTAAFALPVLSNADLNQLKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLP 111

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF 406
           + G  P A +  AL+R      H+++GT     D +        Q   L+L   DE  R 
Sbjct: 112 VYGGQPYAQQLSALKR----GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRM 167

Query: 407 G----VQQRLK-LTQKATAPHVLLMTAT--PIPRTLVLTSLGD---IDISKITEKPAGRK 456
           G    V+  LK L +K     V L +AT  P  R +  T L D   + I+  T   A  +
Sbjct: 168 GFIDDVEAVLKKLPEKR---QVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIR 224

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
                +  ++++D +   L+V   +G   +           +  ++  E      +    
Sbjct: 225 QRYWWVSGLHKLDALTRILEVEPFDGMIIF-----------ARTKAGTEELAQKLQARGL 273

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           + A I+G M    +E  +   K+G   +L+AT V   G+DV   S ++  +  +   + +
Sbjct: 274 AAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYV 333

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           H++ GR GR       IL   P
Sbjct: 334 HRI-GRTGRAGRNGDAILFVTP 354


>gi|237510128|ref|ZP_04522843.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|235002333|gb|EEP51757.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Burkholderia pseudomallei
           MSHR346]
          Length = 465

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 135/308 (43%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + I++  +  + + V
Sbjct: 49  IAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKV 108

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHII+GT     D +    L L     +++DE  R  
Sbjct: 109 LTLCGGTPMRPQTQSLE---HG-AHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRML 164

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K      +     P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 165 DMGFFDDIAK------VARQCPPTRQTLLFSATYPDGIAKLSQQFL-RHP-KKVKLEERH 216

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH      +A+
Sbjct: 217 DDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHVLAL 276

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 277 -HGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVYVHRI- 334

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 335 GRTGRADQ 342


>gi|257051636|ref|YP_003129469.1| DEAD/H associated domain protein [Halorhabdus utahensis DSM 12940]
 gi|256690399|gb|ACV10736.1| DEAD/H associated domain protein [Halorhabdus utahensis DSM 12940]
          Length = 943

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 127/311 (40%), Gaps = 37/311 (11%)

Query: 302 VGSGKTLVALIAMAAAVEA----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            GSGKT  A++ +  A+E     G  A+ + P+  L +   + ++ + +   + +++  G
Sbjct: 54  TGSGKTETAMLPVFDAIEGDPPDGIAALYVTPLRALNRDMRDRLEWWGETLDLEIDVRHG 113

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-------ILVIVDEQHRFGVQQ 410
           +  Q  R++     A     +++ T    Q  +   KL         V+VDE H     +
Sbjct: 114 DTTQYRRQQQ----AEDPPDVLVTTPETVQAILTGEKLREGLADVAHVVVDEVHELAAAK 169

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGD-IDISK---------ITEKPAGRKPIKT 460
           R    Q       L   A P  R  +  ++GD  ++ +         I E  AG      
Sbjct: 170 RG--AQLTVGLERLRDLAGPFQRIGLSATVGDPAEVGRFLTGDRGCSIVEIDAGSDIEID 227

Query: 461 VIIP-INRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHF 514
           V+ P I   DE +    V  +E         ++ E  ES     N R   E   S  + +
Sbjct: 228 VVRPSIEERDENVAGEIVTDAEVASHVRQIDELIETHESTLVFVNTRQTAEALGSRLKEY 287

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + + I HG ++   +  V D+FK G    L+ T+ +E+GIDV     ++  N+      
Sbjct: 288 GTDVGIHHGSLASDTRVEVEDAFKAGDLDALLCTSSMELGIDVGRVDHVVQYNSPR---- 343

Query: 575 QLHQLRGRVGR 585
           Q+ +L  R+GR
Sbjct: 344 QVSRLLQRIGR 354


>gi|209542781|ref|YP_002275010.1| primosome assembly protein PriA [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209530458|gb|ACI50395.1| primosomal protein N' [Gluconacetobacter diazotrophicus PAl 5]
          Length = 759

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 21/158 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT + + A+AA +  G Q +++ P I + +Q    F +++     +    +
Sbjct: 251 LLEGVTGSGKTEIYMEAIAACLARGKQVMVLLPEIALSSQWTGRFARRFGAEPALWHSDL 310

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              +    RR     +A G A +++G   ALF   + + +L L+IVDE+H    +Q   +
Sbjct: 311 GPRL----RRVTWHAVADGTARVVVGARSALF---LPFAELGLIIVDEEHETAFKQEDGV 363

Query: 415 TQKA-----------TAPHVLLMTATPIPRTLVLTSLG 441
           T  A            AP V+L++ATP   TL     G
Sbjct: 364 TYHARDMAVVRARMDRAP-VVLVSATPSLETLANVGAG 400


>gi|168026095|ref|XP_001765568.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683206|gb|EDQ69618.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 127/317 (40%), Gaps = 53/317 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++      Q+ V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYQLLECQALVLAPTRELAQQIEKVMRALGDYLQVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT          +AL  DSI+ +  +L   DE 
Sbjct: 141 ACVGGTSV----REDQRILQAGVHVVVGTPGRVYDMLRRNALRADSIKCF--VLDEADEM 194

Query: 404 HRFGVQQRLK-----LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
              G + ++      L QK     V + +AT  P  L +T        K   KP      
Sbjct: 195 LSRGFKDQIYDIFQLLPQKL---QVGVFSATMPPEALEITR-------KFMNKP------ 238

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFN 508
             V I + R +  +E +K       +  W    + +  E+          N R  V+   
Sbjct: 239 --VKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDLYETLAITQSVIFINTRRKVDWLT 296

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  + 
Sbjct: 297 DKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356

Query: 569 EHFGLAQLHQLRGRVGR 585
                  LH++ GR GR
Sbjct: 357 PTQPENYLHRI-GRSGR 372


>gi|220926974|ref|YP_002502276.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219951581|gb|ACL61973.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 506

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 123/292 (42%), Gaps = 37/292 (12%)

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHG 374
           G + ++++P   LA Q  +  + Y +       ++ G +    + +AL           G
Sbjct: 77  GCRVLVLSPTRELASQIADSFRDYGKFLPFSTTVVFGGVTIGRQERALANGIDVLVATPG 136

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP 432
           +   ++   +L  DS++Y  L+L   D+    G    LK  +T    A   L  +AT +P
Sbjct: 137 RLLDLVDRRSLSLDSVEY--LVLDEADQMLDLGFIHALKRIVTLLPKARQSLFFSAT-MP 193

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           + +   +   +           R P++  + P+    E +E+  + +S G K   +   +
Sbjct: 194 KNIATLAAQYL-----------RDPVQVAVTPVATTAERVEQRVIHVSTGAKQALLGTIL 242

Query: 493 EEKKESNFRSVV--------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +  ES  R +V        +R     E      A IHG  S   +E  + +F+ GTC++
Sbjct: 243 RD--ESIDRVLVFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTCRV 300

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           L+AT +   GIDV   + ++  +  +   A +H++ GR  R    G  IS C
Sbjct: 301 LVATDIAARGIDVEGVTHVVNFDLPNVPEAYVHRI-GRTARAGADGLAISFC 351


>gi|24584399|ref|NP_723899.1| vasa [Drosophila melanogaster]
 gi|12644110|sp|P09052|VASA1_DROME RecName: Full=ATP-dependent RNA helicase vasa, isoform A; AltName:
           Full=Antigen Mab46F11
 gi|7298204|gb|AAF53438.1| vasa [Drosophila melanogaster]
          Length = 661

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 129/314 (41%), Gaps = 52/314 (16%)

Query: 302 VGSGKTLVALIAMAA-------AVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   L+ + +        +E G  Q VI++P   LA Q +   +K+   + + + 
Sbjct: 291 TGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIG 350

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHR--- 405
           I+ G     H+ + + R      H++I T     D      I +     V++DE  R   
Sbjct: 351 IVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD 406

Query: 406 --FGVQQRLKLTQKATAP-HVLLMTATPIP-----------RTLVLTSLGDIDISKITEK 451
             F    R  +T     P H  LM +   P           +  V  ++G +        
Sbjct: 407 MGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV-------- 458

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                 +K  I  +N+     +R K++    ++A      +E K+ ++F   +  F S  
Sbjct: 459 GGACSDVKQTIYEVNK---YAKRSKLIEILSEQADGTIVFVETKRGADF---LASFLSEK 512

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E  T+SI   HG      +E  +  FKNG+ K+LIAT+V   G+D+ +   +I  +    
Sbjct: 513 EFPTTSI---HGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSK 569

Query: 572 GLAQLHQLRGRVGR 585
               +H++ GR GR
Sbjct: 570 IDDYVHRI-GRTGR 582


>gi|328697410|ref|XP_001948642.2| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 718

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 136/317 (42%), Gaps = 51/317 (16%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYT---QNTQI 350
            GSGKTL  ++  A  +          G  A+++AP   LAQQ     K ++   +NT I
Sbjct: 153 TGSGKTLAYMLPAAVHISNQEPLQRGDGPIALVLAPTRELAQQIQSVAKMFSSSIRNTCI 212

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR 405
                 G  PQAH       + +G   I+I T       L + S    ++  +++DE  R
Sbjct: 213 FGGTPKG--PQAHD------LQNG-VEIVIATPGRLIDFLERGSTNLKRVTYLVLDEADR 263

Query: 406 -----FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
                F  Q R  + Q      VL+ +AT       L +   +D  +I         + +
Sbjct: 264 MLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKEVQALAADFLVDYIQIN--------VGS 315

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE-KKESNFRSVV-----ERFNSLHEHF 514
           + +  N     I++L  V  + +K Y +   + +   E  F++++     ++ + L    
Sbjct: 316 LELAAN---HNIQQLIEVCEDHEKDYKLFDLLMKISNEPGFKAIIFVEKKKKVDELTRQI 372

Query: 515 TSSIAI---IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            +   I   +HG  S  D++ V++ F+NG   +L+AT V   G+DV D   +I  +  + 
Sbjct: 373 KNEGYIATSMHGDKSQQDRDHVLNEFRNGKSPILVATDVAARGLDVDDVKYVINFDYPNS 432

Query: 572 GLAQLHQLRGRVGRGEE 588
               +H++ GR GR ++
Sbjct: 433 SEDYVHRI-GRTGRSKQ 448


>gi|329943255|ref|ZP_08292029.1| type III restriction enzyme, res subunit [Chlamydophila psittaci
           Cal10]
 gi|332287834|ref|YP_004422735.1| SNF2 family helicase [Chlamydophila psittaci 6BC]
 gi|313848406|emb|CBY17410.1| putative helicase [Chlamydophila psittaci RD1]
 gi|325506467|gb|ADZ18105.1| SNF2 family helicase [Chlamydophila psittaci 6BC]
 gi|328814802|gb|EGF84792.1| type III restriction enzyme, res subunit [Chlamydophila psittaci
           Cal10]
          Length = 1165

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 19/157 (12%)

Query: 297 ILQGDVGSGKTLVALIAMA-AAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL A+IA+  + +E G G ++I+ P  ++     EF +K+  N +    I
Sbjct: 723 ILADDMGLGKTLQAIIAITQSKLEKGKGCSLIVCPTSLVYNWKEEF-RKF--NPEFKTVI 779

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL---VIVDEQHRFGVQQR 411
           I G +P ++RR+ L  ++     + I ++ L Q  I  YK  +   V++DE H   ++ R
Sbjct: 780 IDG-VP-SYRRRQLANLS--DYDVAITSYNLLQKDIDVYKDFVFDYVVLDEAHH--IKNR 833

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL-VLTSLGDI 443
                K+     + H L++T TPI  +L  L SL D 
Sbjct: 834 TTRNAKSVKMIRSGHRLILTGTPIENSLEELWSLFDF 870


>gi|261192430|ref|XP_002622622.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis SLH14081]
 gi|239589497|gb|EEQ72140.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis SLH14081]
          Length = 1155

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 134/343 (39%), Gaps = 53/343 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKK---YTQNTQ-I 350
           I+     SGK+L+  + M   +E     + + + P   LAQ     +K+   Y +  + I
Sbjct: 366 IISTSTSSGKSLIYQVPMLHELEQDPHSRGMYIFPTKALAQDQRRSLKELLGYIEGLEHI 425

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI----QYYKLIL-----VIVD 401
           +VE   G+ P A R    +     +A II     +   +I     +++  L     V+VD
Sbjct: 426 LVETFDGDTPMADRNTIRD-----EARIIFTNPDMLHITILPQESFWRTFLKNLKFVVVD 480

Query: 402 EQHRFG---------VQQRLKLTQKATAPH------VLLMTATPIPRTLVLTSLGDIDIS 446
           E H +          + +RL+    A               A P+     +  + D+ ++
Sbjct: 481 ELHVYNGLFGSHVAFIMRRLRRICAAVGNRRVKFISCSATVANPVEHMQTIFGIDDVKLT 540

Query: 447 KITEKPAGRKPIKTVIIPI-----------NRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            I   P+GRK       P            N I E       ++  G +    C ++ ++
Sbjct: 541 DIDGSPSGRKEFICWNTPFRDPGDPSSGRGNSIQESARLFCQLVLRGVRVIAFC-RVRKQ 599

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIH-GRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            E    +V + F SL     S   + + G  S  D+  +      G    ++AT  +E+G
Sbjct: 600 CELLLSAVRDEFKSLDRINVSRFVMGYRGGYSPQDRRKIERDMFEGKLLGIVATNALELG 659

Query: 555 IDV--VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +D+  +DA   +I +   + ++ L Q  GR GR  + S  IL+
Sbjct: 660 VDIGSLDA---VITHGFPYSISNLRQQSGRAGRRNKDSVSILV 699


>gi|296807429|ref|XP_002844208.1| eukaryotic initiation factor 4A [Arthroderma otae CBS 113480]
 gi|238843691|gb|EEQ33353.1| eukaryotic initiation factor 4A [Arthroderma otae CBS 113480]
          Length = 395

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 122/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    V+      QA+I+AP   LAQQ  + +        +   
Sbjct: 64  IAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVSIGDFMSVDCH 123

Query: 354 IITGNMPQAHRRKALERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
              G        KAL+          G+ H +I    L  D I+ +  +L   DE    G
Sbjct: 124 ACIGGTNVREDMKALQDGPQVVVGTPGRVHDMIQRRVLKTDHIKMF--VLDEADEMLSRG 181

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             +++    +   ++T   V+L++AT  P           D+ ++T K   R P++   I
Sbjct: 182 FTEQIYDIFQFLPQST--QVVLLSATMPP-----------DVLEVTTKFM-RDPVR---I 224

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      +K  W    + +  E+          N R  V+      + 
Sbjct: 225 LVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLQA 284

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 285 RDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335


>gi|254169048|ref|ZP_04875886.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
           boonei T469]
 gi|197622018|gb|EDY34595.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
           boonei T469]
          Length = 381

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 74/139 (53%), Gaps = 18/139 (12%)

Query: 303 GSGKTLVALIAMAAAVEA-GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           G GKT++A++ +   +E   G+ + +AP   L +QH + IKK T+  ++IV  +TG + +
Sbjct: 38  GLGKTIIAILVLVEVLEKKDGKILFLAPTKPLVEQHAKTIKKLTKIEEVIV--LTGEVSR 95

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHR----FGVQQRL 412
             R++      +G A I++ T  + Q+ I   +L      L+I DE HR    +      
Sbjct: 96  KKRKE-----LYGSAKIVVATPQIIQNDIIAGELKIGDFSLIIFDEAHRAVGNYAYVYIA 150

Query: 413 KLTQKATAPHVLL-MTATP 430
           K  +++   H++L +TA+P
Sbjct: 151 KKYRESREDHLILGITASP 169


>gi|297459070|ref|XP_613184.4| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 1 [Bos
           taurus]
 gi|297487271|ref|XP_002696147.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 1 [Bos
           taurus]
 gi|194386232|dbj|BAG59680.1| unnamed protein product [Homo sapiens]
 gi|296476160|gb|DAA18275.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 1 [Bos taurus]
          Length = 535

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 126/314 (40%), Gaps = 47/314 (14%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER       I I T 
Sbjct: 91  CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 146

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF---GVQ------------QRLKLTQKATAPHV 423
               D ++  K  L     +++DE  R    G +             R  L   AT P  
Sbjct: 147 GRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 206

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII--PINRIDEVIERLKVVLSE 481
           +   A    +  +  ++G +++S      A    ++ V +   + + +++I  ++ ++SE
Sbjct: 207 VRQLAEDFLKDYIHINIGALELS------ANHNILQIVDVCHDVEKDEKLIRLMEEIMSE 260

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
                      +E K   F     R + L             IHG  S  +++ V++ FK
Sbjct: 261 -----------KENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 309

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    + P
Sbjct: 310 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTFFTP 368

Query: 599 PLSKNSYTRLSVLK 612
              K     +SVL+
Sbjct: 369 NNIKQVSDLISVLR 382


>gi|195475588|ref|XP_002090066.1| GE20836 [Drosophila yakuba]
 gi|194176167|gb|EDW89778.1| GE20836 [Drosophila yakuba]
          Length = 1464

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 157/387 (40%), Gaps = 77/387 (19%)

Query: 247  FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS-----------QKNRML 295
            F K   IP+ V G+   K +RN        + + ++DI+++             QK  + 
Sbjct: 1028 FSKYDNIPVKVSGEDVPKAIRNF-------EHAELRDIIRENVTKSGYTVPTPIQKVSIP 1080

Query: 296  RILQG-------DVGSGKTLVALIAMAAAV-------EAGG-QAVIMAPIGILAQQHYEF 340
             I  G         GSGKT   L+ + + +       E G  QAVI++P   LA Q +  
Sbjct: 1081 VIAAGRDLMACAQTGSGKTAAFLVPILSKLLDDPQDLEFGKPQAVIVSPTRELAIQIFSE 1140

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKL 395
             +K+   + + + I+ G     H+ + + +      H++I T     D      I +   
Sbjct: 1141 ARKFAFESYLKISIVYGGTSFKHQNECITK----GCHVLIATPGRLLDFVDRTFITFEDT 1196

Query: 396  ILVIVDEQHR-----FGVQQRLKLTQKATAP-HVLLMTATPIP-----------RTLVLT 438
              V++DE  R     F    R  +  +   P H  LM +   P           ++ V  
Sbjct: 1197 RFVVLDEADRMLDMGFSESMRKFMNHQTMRPEHQTLMFSATFPEEIQRLAGEFLKSYVFV 1256

Query: 439  SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            ++G +              ++  I  +N+  +   +L  +L E      +   +E K+ +
Sbjct: 1257 TIGVVG--------GACSDVQQTIYEVNKFAKR-SKLMEILREQADGTIVF--VETKRGA 1305

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            +F   +  F S  E  T+SI   HG      +E  +  FKNG+ K++IAT+V   G+D+ 
Sbjct: 1306 DF---LASFLSETEFPTTSI---HGDRLQSQREQALRDFKNGSMKVIIATSVAARGLDIK 1359

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGR 585
            +   ++  +  +     +H++ GR GR
Sbjct: 1360 NIKHVVNFDMPNNIDDYVHRI-GRTGR 1385


>gi|160915730|ref|ZP_02077938.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991]
 gi|158432206|gb|EDP10495.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991]
          Length = 572

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 137/310 (44%), Gaps = 39/310 (12%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEI 354
           + + G+GKT    +  I M    +    A+I+ P   L  Q    ++K+++  + + +  
Sbjct: 45  RSNTGTGKTAAFGIPAIEMVQPQDKYANALIICPTRELVTQVAMELRKFSKYKEGVKIVP 104

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQ 409
           I G  P   + + L+R       I++GT     D ++   L L     VI+DE       
Sbjct: 105 IYGGQPIERQIQLLKR----GCGIVVGTPGRIMDHLRRRTLKLSDIRMVILDE-----AD 155

Query: 410 QRLKLTQKATAPHVL-LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           + L +  K     +L LM +    +T++ ++    +I +I  K     P+   I    R 
Sbjct: 156 EMLNMGFKEDIEEILSLMPSERSYQTILFSATWPSEIMRIA-KEFQNDPVTVEIKSAQRT 214

Query: 469 DEVIERLKVVLSEGKKAYWI-------CPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            + +E+L   +  GKKA  +        P++     +  + V E    L++H   + A+ 
Sbjct: 215 IDTVEQLYYEVPRGKKANALRVLLNHYDPELCMIFANTKKMVDELQGELNKHDIKACAL- 273

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----L 576
           HG M    +  VM+ F++G+  +LIAT V   GIDV D  ++I     +F + Q     +
Sbjct: 274 HGDMKQEFRSRVMEQFRSGSMPILIATDVAARGIDVDDVDLVI-----NFDIPQDNEYYI 328

Query: 577 HQLRGRVGRG 586
           H++ GR GR 
Sbjct: 329 HRI-GRTGRA 337


>gi|154279240|ref|XP_001540433.1| eukaryotic initiation factor 4A [Ajellomyces capsulatus NAm1]
 gi|160395527|sp|A6R3R5|IF4A_AJECN RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|150412376|gb|EDN07763.1| eukaryotic initiation factor 4A [Ajellomyces capsulatus NAm1]
          Length = 385

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 126/299 (42%), Gaps = 58/299 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    V+      QA+I+AP   LAQQ  + +        I   
Sbjct: 66  IAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECH 125

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDE-----Q 403
              G +      KAL+        +++GT     D IQ   L      + ++DE      
Sbjct: 126 ACIGGISVREDMKALQ----DGPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLS 181

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           H F  Q          +  V+L++AT +P+          D+ ++T K   R P++ ++ 
Sbjct: 182 HGFTEQIYDIFQFLPQSTQVVLLSAT-MPQ----------DVLEVTTKFM-RDPVRILV- 228

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------RFN 508
                    ++ ++ L EG K ++I  + EE K      + E               + +
Sbjct: 229 ---------KKAELTL-EGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVD 278

Query: 509 SLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 279 WLTDKLTARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 337


>gi|89094563|ref|ZP_01167501.1| probable ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89081162|gb|EAR60396.1| probable ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 410

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 135/321 (42%), Gaps = 43/321 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            GSGKT   LI +   + AG       +A+++ P+  LA+Q   F  K      +    I
Sbjct: 46  TGSGKTAAYLIPVIQELSAGKSPTRQPKAIVLVPVRELAEQIASFFDKLAAGLDLNAVAI 105

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---G 407
            G      + K L R     A +++ T       L   SI+   L L+++DE  R    G
Sbjct: 106 VGGEDFKKQEKQLAR-----ADLVVATPGRLIPHLENRSIELDSLDLLVLDEADRILETG 160

Query: 408 VQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            ++ L   LT    A   LL++AT +P +          + K+ E+   ++P    +   
Sbjct: 161 FKEALDQILTLCPEARQTLLVSAT-LPTS----------VRKLAERIL-QEPEWVRVGQK 208

Query: 466 NRIDEVIERLKVVLSEG-----KKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFTSS 517
             ++  IE+ +++LS+      K+  W+       K     N ++   R +    +    
Sbjct: 209 REVEANIEQ-RIILSDDQTLKDKQLCWLLENESYDKAVVFCNSKTEARRLDGFIRYHKFK 267

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            A++HG +    + + ++ F+ GT K+L+ T +   G+D+    ++I       G   +H
Sbjct: 268 AALLHGDVQQKGRFATIEGFRKGTTKILVTTDLAARGLDIEGVDLVINTEIPRKGDLYIH 327

Query: 578 QLRGRVGRGEEISSCILLYHP 598
           ++ GR GRG      + L  P
Sbjct: 328 RI-GRTGRGGASGKAVSLISP 347


>gi|89072912|ref|ZP_01159469.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89051434|gb|EAR56889.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 432

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 118/290 (40%), Gaps = 39/290 (13%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA+Q    I +Y + T +    I G    + + K LE+       I++ T
Sbjct: 76  RALILAPTRELAEQIANNINEYAKYTDVNCTAIFGGKKMSSQEKRLEQ----GVDILVAT 131

Query: 383 HA-----LFQDSIQYYKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIP 432
                  +  +++    L  ++ DE  R     F    R+ L    T P  +L +AT  P
Sbjct: 132 PGRLIEHMELNNVSLANLEFLVFDEADRMLDMGFIGAIRVILEDIRTKPQTMLFSATSSP 191

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +   L S    DI          KP +  + P N   + I  +   + E +K   +   I
Sbjct: 192 QMNSLAS----DIL--------HKPQRITVTPENSTADTIAHVVYPVDEDRKREMLSELI 239

Query: 493 EEKKESNFRSVV------ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCK 543
            +K   N++ V+      E  N L +          + HG  +   +   ++ FK G  +
Sbjct: 240 GKK---NWKQVLVFVNYKESANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKAR 296

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +++AT V   G+D+ +   ++  +        +H++ GR GR  +  + I
Sbjct: 297 VMVATEVAARGLDIQNLPYVVNYDMPFLAEDYVHRI-GRTGRAGQKGNAI 345


>gi|325124341|gb|ADY83864.1| primosomal protein, ATP-dependent [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 742

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +  + Q+ A + ++    Q    L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 202 LAQMPLTLNEDQKKATQHVVNAQHQYQAFL--LDGLTGSGKTEVYLHIMHEVLKQGKQVL 259

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F  ++  +    + ++   +  + R +A ++   G+A II+GT +
Sbjct: 260 VLVPEIGLTPQTISRFKSRFNCD----IALLHSGLNDSKRLQAWQQAQTGKASIILGTRS 315

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                +   +L L+I+DE+H    +Q+
Sbjct: 316 AIYTPLP--RLGLIILDEEHDLSYKQQ 340


>gi|239626560|ref|ZP_04669591.1| primosomal protein N' [Clostridiales bacterium 1_7_47_FAA]
 gi|239516706|gb|EEQ56572.1| primosomal protein N' [Clostridiales bacterium 1_7_47FAA]
          Length = 767

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
            ++Q+     IL+D  +  R   ++ G  GSGKT V +  +A  ++AG Q +++ P I +
Sbjct: 228 NQAQQEIADSILRDYGEGIRRTYLIHGITGSGKTEVYMELIAHVLQAGRQVIVLIPEISL 287

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F  ++       V ++   M    R    ER   G   IIIG   ALF     
Sbjct: 288 TWQTVMRFYTRFGNR----VSVMNSRMSAGERYDQYERARTGDIDIIIGPRSALFAP--- 340

Query: 392 YYKLILVIVDEQH 404
           +  L L+I+DE+H
Sbjct: 341 FSNLGLIIIDEEH 353


>gi|226494636|ref|NP_001147596.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
 gi|195612416|gb|ACG28038.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
          Length = 768

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 126/315 (40%), Gaps = 51/315 (16%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   ++ M   +        E G   VI AP   LA Q Y   KK+ +   + V 
Sbjct: 265 TGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLRVA 324

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G + +  + K L+        ++I T     D     +++ ++   +++DE  R   
Sbjct: 325 AVYGGVSKFDQFKELK----AGCEVVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFD 380

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKT 460
             F  Q R  + Q       LL +AT +P     L    L D              PI+ 
Sbjct: 381 LGFEPQIRSIVGQIRPGRQTLLFSAT-MPYKVERLAREILTD--------------PIRV 425

Query: 461 VIIPINRIDEVIERL-KVVLSEGKKAYWICPQ----IEEKKESNFRSVVERFNSLHEHFT 515
            +  +   +E I+++  V+ S+ +K  W+  +    I++     F S   R + +     
Sbjct: 426 TVGQVGGANEDIKQVVNVIPSDAEKMPWLLEKLPGMIDDGDVLVFASKKARVDEIERELN 485

Query: 516 SS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                IA +HG      +   +  FK+GT  +L+AT V   G+D+   SI  + N +   
Sbjct: 486 QRGFRIAALHGDKDQASRMETLQKFKSGTYHVLVATDVAARGLDI--KSIKTVVNFDIAK 543

Query: 573 LAQLHQLR-GRVGRG 586
              +H  R GR GR 
Sbjct: 544 EMDMHIHRIGRTGRA 558


>gi|162148141|ref|YP_001602602.1| primosome assembly protein PriA [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786718|emb|CAP56301.1| putative primosomal protein N [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 770

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 21/158 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT + + A+AA +  G Q +++ P I + +Q    F +++     +    +
Sbjct: 262 LLEGVTGSGKTEIYMEAIAACLARGKQVMVLLPEIALSSQWTGRFARRFGAEPALWHSDL 321

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              +    RR     +A G A +++G   ALF   + + +L L+IVDE+H    +Q   +
Sbjct: 322 GPRL----RRVTWHAVADGTARVVVGARSALF---LPFAELGLIIVDEEHETAFKQEDGV 374

Query: 415 TQKA-----------TAPHVLLMTATPIPRTLVLTSLG 441
           T  A            AP V+L++ATP   TL     G
Sbjct: 375 TYHARDMAVVRARMDRAP-VVLVSATPSLETLANVGAG 411


>gi|145297234|ref|YP_001140075.1| primosomal protein N' [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142850006|gb|ABO88327.1| primosomal protein N' [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 735

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 35/211 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++AG QA++M P IG+  Q     I ++ +  ++ V  +
Sbjct: 225 LLDGITGSGKTEVYLSILEPLLKAGKQALVMVPEIGLTPQT----INRFRRRFKVPVVAM 280

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
              M    R  A      G A I+IGT  A+F     +  L ++I+DE+H    +Q+   
Sbjct: 281 NSAMNDRERLDAWLACRDGGAAILIGTRSAVF---TPFKNLGIIIIDEEHDGSFKQQDGF 337

Query: 412 --------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                   +    +A  P +LL +ATP   TL     G      +T +    +  + VI+
Sbjct: 338 RYHARDLAVMRAHRAGIP-ILLGSATPSLETLHNARTGKYHHLSLTRRAGNAQTARQVIL 396

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            I  +     RL+  LS         PQ+E+
Sbjct: 397 DIKSV-----RLQAGLS---------PQLEQ 413


>gi|104779961|ref|YP_606459.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95108948|emb|CAK13644.1| putative ATP-dependent RNA helicase, DEAD box family (RhlE)
           [Pseudomonas entomophila L48]
          Length = 443

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 126/284 (44%), Gaps = 29/284 (10%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHI 378
           +A+++ P   LA+Q +  +++Y +N  +    + G +   PQ  R R+ ++ +      +
Sbjct: 76  RALVLVPTRELAEQVHANVREYAENLPLSTYAVYGGVSINPQMMRLRRGVDLLVATPGRL 135

Query: 379 IIGTHALF-QDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP--HVLLMTATPIP 432
           +     LF Q++I++ ++  +++DE  R    G  + L+    A       LL +AT   
Sbjct: 136 L----DLFRQNAIKFGQVQTLVLDEADRMLDLGFAEELQAVYAALPRKRQTLLFSATFSD 191

Query: 433 RTLVLTSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           +  +L  L   D   I   P  A    +K  ++P+++      +  +     +K  W   
Sbjct: 192 QIRMLAGLALNDPLSIEVSPRNAAASTVKQWLVPVDKK----RKADLFCHLLRKQRWKQV 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +  K  +    +VER   L E   +    IHG      ++  +DSFK    ++L+AT V
Sbjct: 248 LVFAKTRNGVDQLVERL--LAEGVNADG--IHGDRPQATRQRALDSFKAREVQVLVATDV 303

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
              G+D+ D  +++  +        +H++ GR GR    GE IS
Sbjct: 304 AARGLDIDDLPLVVNLDLPIVAEDYVHRI-GRTGRAGNKGEAIS 346


>gi|15598662|ref|NP_252156.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|254236418|ref|ZP_04929741.1| hypothetical protein PACG_02400 [Pseudomonas aeruginosa C3719]
 gi|9949609|gb|AAG06854.1|AE004767_5 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|126168349|gb|EAZ53860.1| hypothetical protein PACG_02400 [Pseudomonas aeruginosa C3719]
          Length = 446

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 151/368 (41%), Gaps = 65/368 (17%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG- 321
           K L ++ FS PT  Q +AI   L+        LR+     GSGKT   L+ +   + A  
Sbjct: 18  KALESLSFSEPTPVQAAAIPKALEGHD-----LRV-TAQTGSGKTAAFLLPLLHRLLAED 71

Query: 322 -----GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN----MPQAHRRKALERIA 372
                 +A+I+ P   LAQQ  + ++++ Q T I   +ITG     +  A  RK  E   
Sbjct: 72  KPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKNPE--- 128

Query: 373 HGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVL-LM 426
                IIIGT     +      L L     +++DE  R        +     A  VL L 
Sbjct: 129 -----IIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADR--------MLDMGFADDVLALA 175

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAG-RKPIKTV-----IIPINRIDEVIERLKV-VL 479
            A P  R  +L S         T   AG  K I  V     ++ +N++ E+ E ++  V+
Sbjct: 176 NACPAERQTLLFS--------ATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVI 227

Query: 480 SEGKKAY------WICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           +    A+      W+       K    +N R   +R           + ++HG     D+
Sbjct: 228 TADDVAHKEQLLQWLLSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDR 287

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEI 589
           +  ++  K G  K+L+AT V   G+DV    ++I  +    G   +H++ GR GR G E 
Sbjct: 288 KLAIERLKQGAVKILVATDVAARGLDVEGLDLVINFDMPRSGDEYVHRI-GRTGRAGAEG 346

Query: 590 SSCILLYH 597
            +  L+ H
Sbjct: 347 LAISLICH 354


>gi|317495876|ref|ZP_07954239.1| DEAD/DEAH box helicase [Gemella moribillum M424]
 gi|316914053|gb|EFV35536.1| DEAD/DEAH box helicase [Gemella moribillum M424]
          Length = 485

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 150/363 (41%), Gaps = 43/363 (11%)

Query: 255 INVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           + V  KI +  L N+ F SPT  Q   I  +L  +        + Q   GSGKT    I 
Sbjct: 7   LGVSSKIVES-LTNMNFVSPTGIQTETIPYVLSGIDI------LAQAQTGSGKTGAFGIP 59

Query: 314 MAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +   V      Q++I+AP   LAQQ  E ++  ++   + V II G      + + L++ 
Sbjct: 60  IVDTVRKTEELQSLILAPTRELAQQVGEQLRLMSRVKGLKVSIIFGGTSIERQIQDLKK- 118

Query: 372 AHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLK-LTQKATAPH 422
              +  II+GT     D I            L+L   DE    G  + ++ +  K T+ H
Sbjct: 119 ---RPQIIVGTPGRVIDHINRKTIRLETLTHLVLDEADEMLNMGFIEDVRFILSKITSRH 175

Query: 423 VLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
             L+ +  +P+T++  S   + D  + K T       P  T    I R +E +E L   L
Sbjct: 176 QTLLFSATMPKTIMELSKDFMKDYKLVK-TMSDEDLNPDITEFATIARENEKLETLIGFL 234

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
                   I     +++     S +     L E        +HG ++   +  ++  FKN
Sbjct: 235 DVQNPNLAIVFGRTKRRVDELSSALIAKGYLAEG-------LHGDITQSKRLEILRKFKN 287

Query: 540 GTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            + ++L+AT V   GID+ D + +    I ++ E +     H++ GR GR  +    +  
Sbjct: 288 NSLQILVATDVAARGIDISDVTHVYNFDIPQDTESY----THRI-GRTGRAGKSGVAVTF 342

Query: 596 YHP 598
            +P
Sbjct: 343 LNP 345


>gi|300118846|ref|ZP_07056566.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           cereus SJ1]
 gi|298723814|gb|EFI64536.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           cereus SJ1]
          Length = 481

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 32/319 (10%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI-SKITEKPAG--RKPIKT 460
             F  Q    + +  T    +L +AT +P  +   S   ++  + I  K AG     I+ 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH 219

Query: 461 VIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            +  + R +E +  LK V + E   +  I  + +E  +  +R + +R N   +       
Sbjct: 220 TLFEV-REEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-DRVNYPCDK------ 271

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      + +H+ 
Sbjct: 272 -IHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRT 330

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       I    P
Sbjct: 331 -GRTGRAGNSGKAITFITP 348


>gi|308080082|ref|NP_001183327.1| hypothetical protein LOC100501728 [Zea mays]
 gi|238010798|gb|ACR36434.1| unknown [Zea mays]
          Length = 649

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 135/327 (41%), Gaps = 42/327 (12%)

Query: 302 VGSGKTLVALIAMAAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVE 353
            GSGKTL  LI     +         G  A+++ P   LA Q +   K+  + ++Q +  
Sbjct: 198 TGSGKTLAFLIPAIEMLYHTHFSPRNGTGAIVVCPTRELAIQTHNVAKELMKYHSQTLGY 257

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHRFG 407
           +I GN    +RR   +++A G  ++++ T     D +Q      Y +L  +++DE  R  
Sbjct: 258 VIGGN----NRRSEADQLAKG-INLLVATPGRLLDHLQNTKSFIYRRLKCLVIDEADRI- 311

Query: 408 VQQRLKLTQKA------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           ++Q  +   K            +L +AT  P    +     +   K  E  + +KP+  V
Sbjct: 312 LEQNFEEDMKQIFKRLPQNRQTVLFSATQTPE---VEKFAKLSFEKNEE--SKKKPV-YV 365

Query: 462 IIPINRIDEVIERLK---VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL--HEHFTS 516
            +  ++    +E L+    V+S  K+   +   + +K+           NS+  H    +
Sbjct: 366 GVDDDKSKATVEGLQQGYCVISSDKRFLVLYAFLRKKRNKKIMVFFSSCNSVKFHAELLN 425

Query: 517 SIAI----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
            + I    IHG+     + +   SF      +L+ T V   G+D+ D   I+  +     
Sbjct: 426 FLGIECSDIHGKQKQQKRTTTFFSFCKAEKGILLCTNVAARGLDIPDVDYILQYDPPDEP 485

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP 599
              +H++ GR  RGE+     LL+  P
Sbjct: 486 KDYIHRV-GRTARGEKGKGSALLFLLP 511


>gi|148245005|ref|YP_001219699.1| ATP-dependent RNA helicase DbpA [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326832|dbj|BAF61975.1| ATP-dependent RNA helicase DbpA [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 462

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 136/321 (42%), Gaps = 39/321 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I QG  GSGKT+   + +   ++      Q++++ P   LA Q    I+K  +    I V
Sbjct: 45  IGQGKTGSGKTVAFGLGLLQKLDVKLFKLQSIVLCPTRELANQVAVEIQKLARVINNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
            ++ G M    +   ++ + HG  H+++GT    ++ ++   L L     +++DE  R  
Sbjct: 105 VVLCGGMSFGLQ---IDSLRHG-VHVVVGTPGRIEEHLRKGTLKLSYINTLVLDEADRML 160

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIPRTL-----VLTSLGDIDISKITEKPAGRKP 457
             G Q+ +   +    T    LL +AT +         V+ S   + +  I E    R  
Sbjct: 161 DMGFQESVDNIIETMPTNRQTLLFSATCLDTITNITQRVMRSPIMVKVPLINE----RST 216

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           IK     IN  +E +  L+++L++ K   +   C    + ++     V   F +L     
Sbjct: 217 IKQYFYKINTDNERMMALRLLLAKYKPESSLVFCNTKRDAQKVANELVYYGFYALA---- 272

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
                IHG +   +++  +  F N +  +L+AT V   G+D+    ++I  +  H     
Sbjct: 273 -----IHGDLDQRERDQALIRFSNKSVSILVATDVAARGLDIDSLDMVINFDIAHDDQVH 327

Query: 576 LHQLRGRVGRGEEISSCILLY 596
           +H++ GR GR         LY
Sbjct: 328 IHRI-GRTGRAGHFGIACTLY 347


>gi|118578871|ref|YP_900121.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118501581|gb|ABK98063.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 454

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 141/347 (40%), Gaps = 39/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT----LVAL--IAMAAAVEAGGQAV 325
           +PT  Q+ AI  ++           I     G+GKT    L AL  ++  ++V   G  V
Sbjct: 23  TPTPIQQQAIPVVMTGSDL------IATAQTGTGKTAAFVLPALQRLSTPSSVPGKGPRV 76

Query: 326 -IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            ++ P   LA Q  +  + Y +  ++    I G MP    R+ L R+      +I+ T  
Sbjct: 77  LVLTPTRELAGQCIDAARSYGRGARLRCGSILGGMPY---REQL-RLLSAPVDLIVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLT 438
              D     SI   +L ++++DE  R        L    +     +++A P  R TL+ T
Sbjct: 133 RLLDHLERGSIALNRLEMLVLDEADRM-------LDMGFSEDMEKIVSAAPQERQTLMFT 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE-RLKVVLSEGKKAYWICPQIEEKKE 497
           +     + K+ EK   R P +  +       E+IE RL V  + G K   +   + +K  
Sbjct: 186 ATMGTTVLKLAEKML-RNPQRIELAVRTSSHELIEQRLHVADNLGHKKELLRHLVSDKGL 244

Query: 498 SN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +    F +     + L    +      A +HG M+   +   ++  + G  +LL+AT V 
Sbjct: 245 TRAIIFSATKRDADELARELSREGHPAAPLHGDMNQFARNKTIERMRKGAIRLLVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             G+DV   S +I  +   F    +H++ GR GR       I    P
Sbjct: 305 ARGLDVNGISHVINFDLPRFAEDYVHRI-GRTGRAGASGIAISFVSP 350


>gi|312869285|ref|ZP_07729452.1| ATP-dependent DNA helicase RecQ [Lactobacillus oris PB013-T2-3]
 gi|311095159|gb|EFQ53436.1| ATP-dependent DNA helicase RecQ [Lactobacillus oris PB013-T2-3]
          Length = 597

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 130/350 (37%), Gaps = 74/350 (21%)

Query: 289 SQKNRMLRILQGD-------VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            QK  + R++ G+        G GK+L   I   A V+ G   V+   I ++  Q    +
Sbjct: 20  GQKEVISRVINGENVLAVMPTGGGKSLCYQIP--ALVKPGVTLVVSPLISLMKDQ----V 73

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLI 396
               QN  I    I   +PQ      L +   GQ  +I  T        F+  + +  + 
Sbjct: 74  DALRQNG-IAAAAINSTIPQEEVNPILRQAYEGQVKLIYVTPERLNMEYFRYQLNFLPVD 132

Query: 397 LVIVDEQH---RFG-------VQQRLKLTQKATAPHVLLMTATPIPR------------- 433
           LV +DE H   ++G        Q +  + Q  + P++L +TAT  P              
Sbjct: 133 LVAIDEAHCISQWGHDFRPAYRQLKEAIDQLKSRPNILALTATATPAVQEDIGQQLAIEK 192

Query: 434 -TLVLTSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
              ++TS    +IS     P  + R+ I+             E LK    E    Y    
Sbjct: 193 DNFIITSFARPNISFRVVHPEKSTRRYIR-------------EYLKAHAQEAGIIY---- 235

Query: 491 QIEEKKESNFRSVVERFNS--LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                   N R  V+   +  L  HF  ++A  H  M    +  V D F+      ++AT
Sbjct: 236 -------VNTRRGVDELTTYLLEHHF--AVAGYHAGMDAATRARVQDDFQFDRVSTIVAT 286

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +   +GID  +   +I   A    +   +Q  GR GR    S  +L+YHP
Sbjct: 287 SAFGMGIDKSNVRFVIHATAAQ-NIESYYQEAGRAGRDGLPSEAVLIYHP 335


>gi|294012703|ref|YP_003546163.1| putative helicase [Sphingobium japonicum UT26S]
 gi|292676033|dbj|BAI97551.1| putative helicase [Sphingobium japonicum UT26S]
          Length = 576

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 138/327 (42%), Gaps = 48/327 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           I+    GSGKT+   +AMA  +              A+ +AP   LA Q    ++     
Sbjct: 40  IVSAQTGSGKTVAFGLAMAKELLGDASRLPAPGLPLALAIAPTRELALQVARELEWLYGE 99

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            +  +    G M  A  R+AL   AHG AHI++GT    +D ++   L L     V++DE
Sbjct: 100 ARARIATCVGGMDAAKERRAL---AHG-AHIVVGTPGRLRDHLERGALDLSGLKTVVLDE 155

Query: 403 QHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKIT----EKP 452
                  G ++ L+  L         LL +AT +P+ +V L      D  +I+    E+ 
Sbjct: 156 ADEMLDMGFREDLEEILDGAPEGRRTLLFSAT-MPKPIVALAKRYQKDALRISTVSDERG 214

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            G    + V +    I+  +  L +   E + A   C         N R +     SL E
Sbjct: 215 HGDISYQAVTVAPADIENAVVNL-LRYHEAETAILFC-----ATRDNVRHL---HASLTE 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +++A+  G  S  ++   + + ++   ++ +AT V   GID+ + S+++     H  
Sbjct: 266 RGFAAVAL-SGEHSQNERNHALQALRDRRARVCVATDVAARGIDLPNLSLVV-----HVE 319

Query: 573 L---AQLHQLR-GRVGRGEEISSCILL 595
           L   A+  Q R GR GR  +  + +L+
Sbjct: 320 LPRDAETMQHRSGRTGRAGKKGTAVLI 346


>gi|260773326|ref|ZP_05882242.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260612465|gb|EEX37668.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 428

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 132/311 (42%), Gaps = 45/311 (14%)

Query: 302 VGSGKTLV-ALIAMAAAVEAG-------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            G+GKT   +L  +   +++G        +A+I+AP   LA Q  + IK Y + T + V 
Sbjct: 47  TGTGKTAAFSLPVIQRLLDSGKKPSPHTARALILAPTRELAAQIAQNIKDYVKYTSLSVT 106

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR--- 405
            + G    + + + LE        I++ T       L + ++    L  ++ DE  R   
Sbjct: 107 AVYGGNKMSSQVRQLE----SGVDILVATPGRLEEHLSEGNVSLANLEFLVFDEADRILD 162

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR-----KPI 458
             F    R  + +  T+P +++ +AT   +   L   GDI + K     A R       +
Sbjct: 163 MGFINPVRKIMLEVETSPQIMMFSATTSAQLNQLA--GDI-LRKPKRINADRVNTTASTV 219

Query: 459 KTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVE-RFNSLHEHFT 515
             V+ P+++     ER   +LSE  G+K +         KE+  + V E + + +     
Sbjct: 220 AHVVYPVDQ-----ERKTELLSELIGRKNWQQVLVFVNYKETANQVVKELKLDGI----- 269

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
               I HG      +   +D FK G  ++++AT V   G+D+VD   +I  +        
Sbjct: 270 -KAVICHGDKGQSARRRALDEFKEGKARVMVATDVAARGLDIVDLPHVINYDMPFLAEDY 328

Query: 576 LHQLRGRVGRG 586
           +H++ GR GR 
Sbjct: 329 VHRI-GRTGRA 338


>gi|123440508|ref|YP_001004502.1| primosome assembly protein PriA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087469|emb|CAL10250.1| primosomal protein n' [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 732

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENILAQGRQALVLVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
              +  + R     R  +G+A I+IGT  ALF     + +L ++I+DE+H          
Sbjct: 277 HSGLNDSERLSVWLRARNGEAAIVIGTRSALF---TPFSRLGVIIIDEEHDSSYKQQEGW 333

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           R+  +       +     +++ TATP   TL    +G      ++++    KP
Sbjct: 334 RYHARDLAVFRAREEGIPIVMGTATPALETLHNVQMGKYRQLTLSKRAGNAKP 386


>gi|163849364|ref|YP_001637408.1| primosomal protein N' [Chloroflexus aurantiacus J-10-fl]
 gi|222527361|ref|YP_002571832.1| primosomal protein N' [Chloroflexus sp. Y-400-fl]
 gi|163670653|gb|ABY37019.1| primosomal protein N' [Chloroflexus aurantiacus J-10-fl]
 gi|222451240|gb|ACM55506.1| primosomal protein N' [Chloroflexus sp. Y-400-fl]
          Length = 842

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 19/222 (8%)

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R+ F + +G  I  +         + P   T +Q  A + I+  +        +L G 
Sbjct: 254 LERRGFVQLVGREIYRDPLATVHPATDTPPPLTSAQRVAYETIVTALEAGTGGRFLLYGI 313

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGKT V L  +A A+  G QA+++AP I +  Q    F+ ++       + ++   + 
Sbjct: 314 TGSGKTEVYLRLIARALRLGRQALVLAPEIALTTQLVRRFVARFGHQ----LAVLHSGLS 369

Query: 361 QAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRL--KLTQK 417
              R     R+  G+A + IG   ALF        L LVIVDE+H  G +     +   +
Sbjct: 370 DGERYDEWRRLRRGEARVAIGARSALFAP---LPDLGLVIVDEEHEPGYKSDAAPRYHAR 426

Query: 418 ATAPH--------VLLMTATPIPRTLVLTSLGDIDISKITEK 451
             A H        V+L +ATP   T      G I + ++ E+
Sbjct: 427 DAALHLADLAGVTVVLGSATPSVETYYAARNGQIQLLELPER 468


>gi|325120651|emb|CBZ56206.1| DEAD-box ATP-dependent RNA helicase 34, related [Neospora caninum
           Liverpool]
          Length = 411

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 145/351 (41%), Gaps = 49/351 (13%)

Query: 260 KIAQKILRNIPFS-----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           K+ + +LR I +S     P+  Q+  IK IL      +R   I Q   G+GKT    IA 
Sbjct: 44  KLNESLLRGI-YSYGFEKPSAIQQRGIKPIL------DRHDTIGQAQSGTGKTATFAIAA 96

Query: 315 AAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
              ++      Q +I+AP   LAQQ  + +       Q+      G       R  + ++
Sbjct: 97  LQLIDYNINNCQVLILAPTRELAQQIQKVVLALGDYLQVRCHACVGGTVV---RDDIAKL 153

Query: 372 AHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAP-- 421
             G  H+++GT     D ++   L      L I+DE       G + ++    K   P  
Sbjct: 154 KAG-VHMVVGTPGRVHDMMEKRHLRVDDMKLFIMDEADEMLSRGFKSQIYDVFKKLPPDV 212

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS- 480
            V L +AT +P+          DI ++T K   R P + ++       E I +  V +  
Sbjct: 213 QVALFSAT-MPQ----------DILELTTKFM-RDPKRILVKNDELTLEGIRQFYVAVEK 260

Query: 481 EGKKAYWICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           E  K   +C   E           N R  V+   S       +++ +HG M    +E +M
Sbjct: 261 EDWKLETLCDLYETLTITQAIIYCNTRRKVDFLTSKMSERDFTVSSMHGDMDQKSREMIM 320

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
             F++G+ ++LI T ++  GIDV   S++I  +        +H++ GR GR
Sbjct: 321 REFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPATKENYIHRI-GRSGR 370


>gi|224010271|ref|XP_002294093.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220970110|gb|EED88448.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 471

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 129/307 (42%), Gaps = 34/307 (11%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     + A        G   +++AP   LA Q  E   K+  +++I   
Sbjct: 115 TGSGKTLAFLLPAMIHINAQQYLKPGEGPIVLVLAPTRELAVQIKEECDKFGASSEIKNT 174

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR--- 405
           ++ G +P++ + ++L         I+I T       L Q +    ++  +++DE  R   
Sbjct: 175 VVYGGVPKSKQVRSLRE----GVEIVIATPGRLIDHLEQGNTNLKRVTYLVLDEADRMLD 230

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGDI-DISKITEKPAGRKPIK 459
             F  Q R  ++Q      VL+ +AT  P+    L    L D   ++  +   AG K + 
Sbjct: 231 MGFEPQLRKIVSQIRPDRQVLMWSAT-WPKEVQNLARDYLSDFYQVTVGSLDLAGNKDVT 289

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            +I   +  D+    L+ +         +   +E KK  +  +   R +           
Sbjct: 290 QMIDVCSDQDKYRNLLRYLRENLTSKDRVLVFVETKKGCDMLTRSLRMDGFQAR------ 343

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG  S  +++ V+  FK+    LL+AT V   G+DV D  +++  +  +     +H++
Sbjct: 344 AMHGDKSQEERDWVLREFKSCQATLLVATDVAARGLDVDDIKMVVNFDFPNDTETYIHRI 403

Query: 580 RGRVGRG 586
            GR GR 
Sbjct: 404 -GRTGRA 409


>gi|227525|prf||1705301A ATP dependent RNA helicase
          Length = 697

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 89/425 (20%), Positives = 172/425 (40%), Gaps = 77/425 (18%)

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGI 253
            K  F       +   + R  +D +W+ P A       EL +G    +     F+K   I
Sbjct: 153 DKSGFGRFDRGNSRWSDDRNDED-DWSKPLAPNDRVEQELFSGSNTGI----NFEKYDDI 207

Query: 254 PINVEGK-------------IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLR 296
           P+   G              + + I+ NI  +    PT  Q+ AI  I++    K  ++ 
Sbjct: 208 PVEATGSNCPPHIESFHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIE----KRDLMA 263

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------------------AVIMAPIGILAQ 335
             Q   GSGKT   L+ + + + A G                      ++++AP   LA 
Sbjct: 264 CAQ--TGSGKTAAFLLPILSQIYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAV 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           Q YE  +K+   +++   ++ G      + + LER      H+++ T     D ++  K+
Sbjct: 322 QIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKI 377

Query: 396 IL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVL---LMTATPIPRTLVLTSLGD 442
            L     +++DE  R     F  Q R  + Q    P  +   +M +   P+ + + +   
Sbjct: 378 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDF 437

Query: 443 ID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           +D      +    +  + I   ++ +  +D+    L ++ + GK +  +   +E KK ++
Sbjct: 438 LDEYIFLAVGRVGSTSENITQKVVWVEEMDKRDFLLDLLNATGKDSLTLV-FVETKKGAD 496

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
               +E F  L+E   +  +I HG  S  D+E  +  F++G   +L+AT V   G+D+ +
Sbjct: 497 ---ALEDF--LYEEGYACTSI-HGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 550

Query: 560 ASIII 564
              +I
Sbjct: 551 VKHVI 555


>gi|3986287|dbj|BAA34994.1| DjVLGB [Dugesia japonica]
          Length = 781

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 95/431 (22%), Positives = 173/431 (40%), Gaps = 82/431 (19%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRK-----------------QFKKEIGIPINVEG-- 259
            W  P      YD + +  + L +++                   F K   IP++V G  
Sbjct: 117 SWRPPLNNGNIYDGVKSNPMGLHILQNGIDLYTNVDSNSVTSAINFDKYDSIPVSVTGPD 176

Query: 260 -------------KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDV 302
                        K+   I  NI  +    PT  Q++AI  IL+       ++   Q   
Sbjct: 177 YSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRD----IMACAQ--T 230

Query: 303 GSGKTLVALIAMAAAV------------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           GSGKT   LI +   +             A  + +I+AP   LA Q     +K++ NT +
Sbjct: 231 GSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPL 290

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
              ++ G    A     +  +  G  H+++ T     D I+  K+ L     +++DE  R
Sbjct: 291 RSCVVYGG---ADTHSQIREVQMG-CHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADR 346

Query: 406 F---GVQQRL-KLTQKATAPHVL----LMTATPIPR---TLVLTSLGDIDISKITEKPAG 454
               G + ++ K+ +++  P  +    LM +   P+    L    L +     +    + 
Sbjct: 347 MLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGST 406

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
              IK  II +  + E +  LK + +       I   +E KK ++    + RF  L + +
Sbjct: 407 SDSIKQEIIYMTDV-EKLNYLKNIFNTTAPNTLILIFVETKKGAD---SLARF-LLSKGY 461

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              ++ IHG  S +++E+ +  F+NG C +L+AT V   G+D+ +   +I  +       
Sbjct: 462 --PVSSIHGDRSQVEREAALSMFRNGQCPILVATAVAARGLDIPNVKHVINYDLPSDIEE 519

Query: 575 QLHQLRGRVGR 585
            +H++ GR GR
Sbjct: 520 YVHRI-GRTGR 529


>gi|83951704|ref|ZP_00960436.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius nubinhibens ISM]
 gi|83836710|gb|EAP76007.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius nubinhibens ISM]
          Length = 786

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 32/270 (11%)

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILV 398
           Y +    I   + G M     R+ LER     AHI++GT    +D     S+    L +V
Sbjct: 116 YAETGARIASCV-GGMDMRDERRTLER----GAHIVVGTPGRLRDHISRGSLDMDDLRVV 170

Query: 399 IVDEQHR---FGVQQRLKLTQKATAPH---VLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           ++DE       G ++ L+   +A AP     LL +AT  P    L      D  +I    
Sbjct: 171 VLDEADEMLDLGFREDLEFMLEA-APENRRTLLFSATVPPAIARLAGQFQRDARRIN--- 226

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVERFN 508
                  TV       D   + L+V   EG+ A +   +  + + +    N R+ V    
Sbjct: 227 -------TVSSTEQHADIAYQALRVAHGEGEAAIFNLLRFHDAEAAIVFANTRAAVNHLT 279

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +   +   ++  + G +S  ++   + + ++G  ++ +AT V   GID+ + +++I  + 
Sbjct: 280 TRLANRGFAVVSLSGELSQSERSHALQAMRDGRARICVATDVAARGIDLPNLNLVIHADL 339

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                + +H+  GR GR        L+  P
Sbjct: 340 PKNTESLMHR-SGRTGRAGRKGVSALIVAP 368


>gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 466

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 143/349 (40%), Gaps = 43/349 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM-----AAAVEAGGQ--- 323
           +PT  Q  AI  +++     + ++ + Q   G+GKT   ++ +     A   +A G+   
Sbjct: 41  TPTPIQARAIPAVMKG----HDLIGLAQ--TGTGKTAAFVLPLVHQLLAENKQAPGRSCR 94

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  E +K YT +T++   ++ G +    + KAL R       I++ T 
Sbjct: 95  ALILAPTRELAAQIEEQVKAYTAHTKLTSTVVFGGVKAGPQIKALAR----GVDILVATP 150

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPI 431
               D +   K  L     VI+DE  +         +++ L++  +      L+ +AT  
Sbjct: 151 GRLLDHLGERKARLDLTRFVILDEADQMLDLGFIPAIRKLLRMVGEER--QTLMFSATMA 208

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           P    +  L D D     E  A   P K    P+ RID+ +   +           + P+
Sbjct: 209 P---AIRQLAD-DFLDHPETVAVTPPSK----PVERIDQKVFYTEASAKPDALIDLMAPE 260

Query: 492 IEEKK--ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             ++    +  +   +R       +      IHG  S   +   +D+FK+G   +L+AT 
Sbjct: 261 AGKRAIIFTRTKYGADRVAKRLVKYGHKANAIHGDKSQNQRTRALDAFKSGEAPVLVATD 320

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +   GIDV    +++     +     +H++ GR  R       + L  P
Sbjct: 321 IAARGIDVDGVDLVVNYELPNVAENYVHRI-GRTARAGASGRAVALCAP 368


>gi|315606927|ref|ZP_07881933.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574]
 gi|315251308|gb|EFU31291.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574]
          Length = 375

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 147/346 (42%), Gaps = 61/346 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q+ AI   L+       +L I Q   G+GKT    I +   +            +
Sbjct: 23  TPTPIQQKAIPIGLEGRD----LLGIAQ--TGTGKTAAFAIPIIQQLAKSADDNRRRDIK 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  E  K Y++ T++   +I G + Q  + K LER       I+I T 
Sbjct: 77  ALILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKELER----GVDILIATP 132

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPI 431
               D I  + + L      ++DE  R         +++ + L  K      LL +AT +
Sbjct: 133 GRLLDLISQHIITLEHIRHFVLDEADRMLDMGFIHDIKKLIPLLPKRR--QTLLFSAT-M 189

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           P T          I+K++ K    KP +  + P++ + + IE+    + + +K   +   
Sbjct: 190 PET----------IAKLS-KSLLYKPARVEVAPVSSVVDTIEQRLYFVEKPQKTDLLVSV 238

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIA-----------IIHGRMSDIDKESVMDSFKNG 540
           +  K + N  ++V    S  +H    IA            IHG  S   ++  + +FK+G
Sbjct: 239 L--KNDGNRSALV---FSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSG 293

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             ++++AT +   GID+ +  ++I  +        +H++ GR GR 
Sbjct: 294 KTRVIVATDIAARGIDIANLQMVINYDLPDVAETYVHRI-GRTGRA 338


>gi|307181904|gb|EFN69344.1| ATP-dependent RNA helicase vasa [Camponotus floridanus]
          Length = 355

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 150/365 (41%), Gaps = 90/365 (24%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV--------------ALIAMAAAV 318
           PT  Q+ AI  I   MS ++ M        GSGKT                 LI  + + 
Sbjct: 22  PTPVQKYAIPII---MSGRDLMA---CAQTGSGKTAAFVVPILHTLLENPRDLITTSTSC 75

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           E   Q +I++P   L QQ Y+  KK++ N+ I  E+  G    +H R   E+I  G  H+
Sbjct: 76  EP--QVLIVSPTRELTQQIYQQAKKFSLNSIIRCEVAYGGTSVSHNR---EKIFAG-CHV 129

Query: 379 IIGTHALFQD----------SIQYYKL--------------ILVIVDEQHRFGVQQRLKL 414
           ++ T     D          S++++ L              I  IVD +     ++R  L
Sbjct: 130 LVATPGRLLDFIGRGRIKLSSLRFFVLDEADRMLDMGFLPDIEKIVDHETMVPAEERQTL 189

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDI---------DISKITEKPAGRKPIKTVIIPI 465
              AT P  +   A    +  +  ++G +         +  + + +P  RK +K ++   
Sbjct: 190 MFSATFPSEIQELAGRFLKNYLFLAVGIVGGACADVQQNFYQASGQPEKRKLLKELLDKQ 249

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           +++  +         EG   +     +E+K+ ++F   +  F S     T+SI   HG  
Sbjct: 250 SQMGSI---------EGTLVF-----VEQKRHTDF---IAAFLSESNFPTTSI---HGDR 289

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLR 580
              ++E  +  FK G   +L+AT V   G+D+ + + +I     +F L +     +H++ 
Sbjct: 290 LQREREEALSDFKRGKMSILVATAVAARGLDIKNVAHVI-----NFDLPKTIDEYVHRI- 343

Query: 581 GRVGR 585
           GR GR
Sbjct: 344 GRTGR 348


>gi|238786257|ref|ZP_04630201.1| Primosomal protein N' [Yersinia bercovieri ATCC 43970]
 gi|238712827|gb|EEQ04895.1| Primosomal protein N' [Yersinia bercovieri ATCC 43970]
          Length = 727

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 93/203 (45%), Gaps = 26/203 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q    F ++++      VE++
Sbjct: 216 LLAGVTGSGKTEVYLSVLENILAQGRQALVLVPEIGLTPQTIARFRERFSAP----VEVL 271

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
              +  + R     R  +G+A I+IGT  ALF     + +L ++I+DE+H          
Sbjct: 272 HSGLNDSERLSVWLRARNGEAAIVIGTRSALF---TPFSRLGVIIIDEEHDSSYKQQEGW 328

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP------- 457
           R+  +       +     +++ TATP   TL    +G      ++++    KP       
Sbjct: 329 RYHARDLAVFRAREEGIPIVMGTATPALETLHNVQMGKYRQLTLSKRAGNAKPAAQHLLD 388

Query: 458 IKTVIIPINRIDEVIERLKVVLS 480
           +K + + +     +++R+K  L+
Sbjct: 389 LKGLPLKVGLSQPLLKRMKAHLA 411


>gi|307297146|ref|ZP_07576960.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306877450|gb|EFN08680.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 584

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 135/339 (39%), Gaps = 72/339 (21%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQN 347
           I+    GSGKT+   +AMA  +        +AG   A+ +AP   LA Q    ++     
Sbjct: 40  IVSAQTGSGKTVAFGLAMAGELLGEQSRLPQAGKPLALAIAPTRELALQVSRELEWLYGE 99

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            +  +    G M  A  R+AL   +HG AHI++GT    +D ++   L L     V++DE
Sbjct: 100 ARARIATCVGGMDAAKERRAL---SHG-AHIVVGTPGRLRDHLERGALDLSDLKTVVLDE 155

Query: 403 QHRF---------------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL------- 440
                                Q+R  L   AT P  ++  A    +  +  S        
Sbjct: 156 ADEMLDMGFREDLEEILDGAPQERRTLLFSATMPKPIVALAKRYQKDALRISTVSDERGH 215

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           GDI    +T  PA    I+  ++ + R  E            + A   C         N 
Sbjct: 216 GDISYQALTVAPAD---IENAVVNLLRYHEA-----------ETAILFC-----ATRDNV 256

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           R +     SL E   +++A+  G  S  ++   + + ++   ++ +AT V   GID+ + 
Sbjct: 257 RHL---HASLTERGFAAVAL-SGEHSQNERNHALQALRDRRARVCVATDVAARGIDLPNL 312

Query: 561 SIIIIENAEHFGL---AQLHQLR-GRVGRGEEISSCILL 595
           S+++     H  L   A+  Q R GR GR  +  + +L+
Sbjct: 313 SLVV-----HVELPRDAETMQHRSGRTGRAGKKGTAVLI 346


>gi|254580545|ref|XP_002496258.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
 gi|238939149|emb|CAR27325.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
          Length = 494

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 121/300 (40%), Gaps = 26/300 (8%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT    I +   +    Q   A ++AP   LAQQ  E          +    I G 
Sbjct: 118 TGSGKTAAFAIPILNRLWEDKQPYYACVLAPTRELAQQTKETFDSLGALMGVRSTCIVGG 177

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHRFGVQQRL 412
           M    + + L R    + HIII T     D ++        KL  +++DE  R      L
Sbjct: 178 MNMMDQARELMR----KPHIIIATPGRLMDHLENTKGFSLRKLRFLVMDEADRL-----L 228

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEV 471
            +        +L +  T    T + ++     I K+ ++ +  +P+K  +      +D +
Sbjct: 229 DMEFGPVLDKILKVIPTQDRTTYLFSATMTSKIDKL-QRASLTEPVKCAVSNKYQTVDTL 287

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMS 526
           ++ L VV S  K  Y I    E   ++       ++  ER ++L      +   +HG ++
Sbjct: 288 VQTLMVVPSGLKNTYLIYLLNENIGKTVIIFTRTKANAERLSALCNLLEFNATALHGDLN 347

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              +   +D FK G   +L+AT V   G+D+    I+I  +      + +H++ GR  R 
Sbjct: 348 QNQRTGALDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRV-GRTARA 406


>gi|116252251|ref|YP_768089.1| cold-shock DEAD-box protein A (ATP-dependent RNA helicase DEAD)
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256899|emb|CAK07993.1| putative cold-shock DEAD-box protein A (ATP-dependent RNA helicase
           DEAD) [Rhizobium leguminosarum bv. viciae 3841]
          Length = 651

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 130/315 (41%), Gaps = 44/315 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  +  G +         A+++AP   LA Q    ++   + 
Sbjct: 41  LVSAQTGSGKTVAFGLALAPTLLEGRERFGNAGAPLALVIAPTRELALQVKRELEWLFEM 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399
           T  ++    G M     R++LER     AHI++GT     D I+   L        +L  
Sbjct: 101 TGAVIVSCVGGMDIRSERRSLER----GAHIVVGTPGRLCDHIRRRALDMSELKAAVLDE 156

Query: 400 VDEQHRFGVQQRLKLTQKATAP---HVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGR 455
            DE    G ++ L+    A AP     L+ +AT +P  +  L      D  +I+     +
Sbjct: 157 ADEMLDLGFREDLEFILDA-APDERRTLMFSAT-VPAAIAKLAKSYQRDAVRISTAAEEK 214

Query: 456 KPIKT-----VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           + I       ++ P +R + +I  L+    E   A   C         + R+ V    + 
Sbjct: 215 QHIDIEYRALMVAPSDRENAIINVLRYY--EATNAIVFC---------STRAAVNHLTAR 263

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             +   ++  + G ++  ++   + + ++G  ++ IAT V   GID+    ++I  +   
Sbjct: 264 FNNRNFAVVALSGELTQNERTHALQAMRDGRARVCIATDVAARGIDLPGLDLVIHADLPT 323

Query: 571 FGLAQLHQLRGRVGR 585
                LH+  GR GR
Sbjct: 324 NPDTLLHR-SGRTGR 337


>gi|75674625|ref|YP_317046.1| primosome assembly protein PriA [Nitrobacter winogradskyi Nb-255]
 gi|74419495|gb|ABA03694.1| replication restart DNA helicase PriA [Nitrobacter winogradskyi
           Nb-255]
          Length = 738

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 9/133 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           ++SQ +A+  +    S     + +L G  GSGKT V   A+A  V  G Q +I+ P I +
Sbjct: 206 SRSQRAAVDAMRALASNGTFHVALLDGVTGSGKTEVYFEAVAETVRRGRQVLILMPEIAL 265

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F  ++ +     +E  +   P+ +R +    IA G+A +++G   ALF   + 
Sbjct: 266 TGQFRDRFAARFGERP---LEWHSELTPR-NRARNWAAIAAGEAQVVVGARSALF---LP 318

Query: 392 YYKLILVIVDEQH 404
           Y  L L+I+DE+H
Sbjct: 319 YADLGLIIIDEEH 331


>gi|327538640|gb|EGF25295.1| ATP-dependent DNA helicase RecQ [Rhodopirellula baltica WH47]
          Length = 484

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 133/318 (41%), Gaps = 43/318 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK+L   +     +   G  ++++P+  LA+   E +K+  Q T ++    T    +
Sbjct: 39  TGAGKSLCYQLP---GILRDGVTLVVSPLISLAKDQAEHLKEAGQPTVVLNSTRTKKQIE 95

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQH---RFGVQQRL- 412
           + R K    IA G+   ++ T    Q +     +    + L++VDE H   ++G   R  
Sbjct: 96  SARSK----IAAGKVKFVLTTPERLQKTDICELLAGVGVGLMVVDEAHCVSQWGHDFRPD 151

Query: 413 -----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                 + ++   P +  +TAT   RTL      ++  S     P        V   I+R
Sbjct: 152 YLCLPSIRERLGNPPLAALTATASERTL-----DEVRCSLRMNDPT------IVRTGIDR 200

Query: 468 IDEVIERLKVVLSEGK-----KAYWICPQIEEKKES-NFRSVVERFNSLHEHFTSSIAII 521
            +  IE ++   +E K     +A  I   +E  + +  +    +  + L + F       
Sbjct: 201 PNLRIEVVRCYSAEDKLKQLHRALEIEGMLERTEPAIVYCGTTKTADQLAKSFGG--LCY 258

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG-LAQLHQLR 580
           HG+M   D+ +  + F NG   ++ AT    +GID  D   +I  + E  G L   +Q  
Sbjct: 259 HGKMRKADRAAAQEEFMNGRPSVMFATNAFGLGIDKHDLRQVI--HVELPGSLESYYQEM 316

Query: 581 GRVGRGEEISSCILLYHP 598
           GR GR  + S C LLY P
Sbjct: 317 GRAGRDGKRSRCTLLYDP 334


>gi|326796959|ref|YP_004314779.1| primosomal protein N' [Marinomonas mediterranea MMB-1]
 gi|326547723|gb|ADZ92943.1| primosomal protein N' [Marinomonas mediterranea MMB-1]
          Length = 743

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 19/146 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++   Q ++M P IG+  Q     +K++       + ++
Sbjct: 233 LLDGITGSGKTEVFLRVIDKLIKEDKQVLVMVPEIGLTPQT----LKRFENRLDTDIVLM 288

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR---- 411
             NM    R  A      G A +IIGT +     I+   L ++I+DE+H    +Q+    
Sbjct: 289 HSNMTDRERLDAWLLCRQGHAKVIIGTRSAVFMPIK--NLGMIIIDEEHDASYKQQDGFR 346

Query: 412 -------LKLTQKATAPHVLLMTATP 430
                  +K  Q A AP VLL +ATP
Sbjct: 347 YHARDLAIKQAQSANAP-VLLASATP 371


>gi|253575601|ref|ZP_04852937.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251844939|gb|EES72951.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 472

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 137/309 (44%), Gaps = 38/309 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + Q   G+GKTL  L+ +   +  G    Q +I+AP   LA Q     +KY +   I  +
Sbjct: 45  LAQSQTGTGKTLAYLLPLLQRINPGEKTLQGLILAPTQELAMQILREAEKYGEPLGIRSQ 104

Query: 354 IITGNMPQAHRRKALERIA-HGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFG 407
            + G    A  ++ LE++  H Q  +++GT    ++      ++ + L+ V+VDE     
Sbjct: 105 ALIGG---AAIKRQLEKLKLHPQ--LVVGTPGRIREILALRKLKLHTLLTVVVDE----- 154

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           V Q  +L   A   H+L  T     + + L++  + DI  +  K   ++P++  I P  R
Sbjct: 155 VDQMFQLGGTADVEHILRGTLRDR-QLMFLSATINPDIRALAAKEM-KEPLEIGIEPEQR 212

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAI 520
             + +E L  V SE +    +  +I    E        N    +    +   +   S   
Sbjct: 213 TSKTVEHLYFV-SEARDKIDMLRRIVRHFEPERTIVFINNTDQIAEVEAKMNYVGLSAGA 271

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE----NAEHFGLAQL 576
           ++G      +   +  F+ G  ++L+A+ V   G+D+ + ++++      ++EH+    +
Sbjct: 272 LYGDADKTARSLTLQRFREGKIRVLVASDVAARGLDIENLALVVNLDPPIDSEHY----V 327

Query: 577 HQLRGRVGR 585
           H++ GR GR
Sbjct: 328 HRV-GRTGR 335


>gi|227485114|ref|ZP_03915430.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236947|gb|EEI86962.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 550

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 145/351 (41%), Gaps = 55/351 (15%)

Query: 261 IAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           I+++ LR I      SP+  QE  I  +L           I Q   G+GKT    I +  
Sbjct: 22  ISEETLRAIADMGFKSPSPIQEETIPPLLDGKDV------IGQAQTGTGKTAAFAIPIIE 75

Query: 317 AVEAGG--QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAH 373
            +EA G  QA+++ P   L  Q  + I    + +T I +  + G      + KAL++   
Sbjct: 76  KIEANGLTQALVLCPTRELCIQVAKEIGNLAKYHTGIKILSVYGGTQIVKQIKALKK--- 132

Query: 374 GQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAP--HV 423
               I++GT     D      ++   L +V++DE       G +  +K    AT      
Sbjct: 133 -GVEIVVGTPGRLMDLMRRRVLKLDNLKIVVLDEADEMFDMGFRDDMKFILDATNDDRQT 191

Query: 424 LLMTATPIPRTLVLTSLGD--IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
              +AT          +G    + SKI +K      IK   + +N+ID+   +LK    E
Sbjct: 192 CFFSAT----------MGKEISEFSKIYQKNPVTIKIKAKELTVNKIDQHFIKLK----E 237

Query: 482 GKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSSIAII---HGRMSDIDKESVMD 535
             K   +   +E  K      F +   + + L E  +    ++   HG +    ++ VM 
Sbjct: 238 ADKEETLTRLLEINKPRLAIIFCNTKRKVDKLVESLSKKSYLVDGLHGDLKQTQRDIVMK 297

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGR 585
            F+N T  +L+AT V   G+DV D  ++I     ++ L QL +    R+GR
Sbjct: 298 KFRNNTIDILVATDVAARGLDVDDVDMVI-----NYDLPQLDEYYVHRIGR 343


>gi|221311883|ref|ZP_03593730.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221316207|ref|ZP_03598012.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221321119|ref|ZP_03602413.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221325403|ref|ZP_03606697.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|255767828|ref|NP_391790.2| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|254763269|sp|P42305|DBPA_BACSU RecName: Full=ATP-dependent RNA helicase dbpA
 gi|225185456|emb|CAB15947.2| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 479

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 147/350 (42%), Gaps = 46/350 (13%)

Query: 260 KIAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALI 312
           +I+  ILR +       PTK Q+S I   L+      R   +++   GSGKT    + L 
Sbjct: 8   QISHDILRALEGLGYTEPTKVQQSVIPAALE------RKDLVVKSQTGSGKTASFGIPLC 61

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            +A   E   QA+I+ P   LA Q  E I    +  +I    + G      ++  L++  
Sbjct: 62  ELANWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQ-- 119

Query: 373 HGQAHIIIGTHALFQDSIQYYKL------ILVI--VDEQHRFGVQQRLKLTQK--ATAPH 422
             ++HI++GT     D I+   L       LVI   DE    G  ++++   K   T   
Sbjct: 120 --KSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERT 177

Query: 423 VLLMTATPIPRTLVLTSLGDI-DISKITEKPAG--RKPIKTVIIPINRIDEVIERLKVVL 479
            +L +AT +P+ +   S   + +   I  K AG   + I+  +I +   ++      V++
Sbjct: 178 TMLFSAT-LPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLM 236

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDS 536
           +E   +  I           F    E  N L +           IHG M   D+  VM+ 
Sbjct: 237 TENPDSCII-----------FCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNE 285

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           FK G  + L+AT V   GID+ + S++I  +      + +H+  GR GR 
Sbjct: 286 FKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRT-GRTGRA 334


>gi|143636073|gb|ABO93350.1| vasa-like protein [Hydractinia echinata]
          Length = 680

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 154/369 (41%), Gaps = 68/369 (18%)

Query: 258 EGKIAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           E  +++ I +NI       PT  Q+ AI  IL D      ++   Q   GSGKT   L+ 
Sbjct: 227 EAGLSESIQKNIEKAKYLKPTPVQKYAIPIILGDRD----LMSCAQ--TGSGKTAAFLLP 280

Query: 314 MAAAVEAGGQAV------IMAPIGI-------LAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           + A++      +      + AP+G+       LA Q Y+  +K++  T +   ++ G + 
Sbjct: 281 VLASIMQHKDQLTSQLSEVQAPLGLIIAPTRELANQIYQEARKFSFQTSVRPVVVYGGVS 340

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQ------------ 403
            A++   L ++  G  H+++GT    +D I   K+ L     +++DE             
Sbjct: 341 VAYQ---LRQVQSG-CHLLVGTPGRLKDFIGKRKISLENLKYLVLDEADRMLDMGFMPDV 396

Query: 404 ----HRFGV---QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
               H FG+   + R  L   AT P  +   A       V  ++G +  +          
Sbjct: 397 KEIIHGFGMPAKEDRHTLMFSATFPEEIQKLAGEFLNNYVFLTIGKVGST--------HS 448

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I+  +I ++   +  + ++++  EG     +   ++ K++++F +     N      T+
Sbjct: 449 DIEQTVIEVDNASKRDKLVEMLGQEGGNKNLVF--VQTKRQADFLASYLCQNGFP---TT 503

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           SI   HG      +E  +  F+ G   +LIAT V   G+D+ D   +I  +        +
Sbjct: 504 SI---HGDRFQQQREEALREFRAGQQTVLIATAVAARGLDIADVKQVINYDLPDEIEEYI 560

Query: 577 HQLRGRVGR 585
           H++ GR GR
Sbjct: 561 HRI-GRTGR 568


>gi|164657065|ref|XP_001729659.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966]
 gi|159103552|gb|EDP42445.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966]
          Length = 560

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 149/368 (40%), Gaps = 53/368 (14%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTL------VALIAMAAAVEAGGQ--AVIM 327
           ++ SAI+     ++   R L +   + GSGKT+      +  I   A ++ G    A+I+
Sbjct: 156 TEPSAIQSQAWPLALSGRDL-VAIAETGSGKTIGFALPSILHIKAQAPLQYGDGPIALIL 214

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA Q     +++    ++    + G +P+  + ++L+R     A I+I T     
Sbjct: 215 APTRELAVQIQNECQRFGSACRVRTTSVYGGVPKGQQIRSLQR----GAEIVIATPGRLI 270

Query: 388 DSIQYYKLIL-----VIVDEQHRF---GVQ------------QRLKLTQKATAPHVLLMT 427
           D ++  K  L     +++DE  R    G +             R  L   AT P  +   
Sbjct: 271 DMMEIGKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVEQIRPDRQTLMFSATWPKEVQRM 330

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE---VIERLKVVLSEGKK 484
           A+      V  ++G +++       A    +K VI      D+   +I+ L+ +  E  K
Sbjct: 331 ASDFLNDYVQVNIGSMEL-------AANHNVKQVIEVCTEFDKRGRLIKHLEHISQENGK 383

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
                           R+  +    L +     +AI HG     +++ V+  FK+G   +
Sbjct: 384 VIIFT--------GTKRAADDLTKFLRQDGWPGLAI-HGDKQQDERDWVLREFKSGNSPI 434

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           ++AT V   G+DV D S +I  +        +HQ+ GR GR       I  +    SK++
Sbjct: 435 MVATAVASRGLDVKDISYVINSDFPTNTEDYIHQI-GRTGRAGRKGVAITFFTSENSKSA 493

Query: 605 YTRLSVLK 612
              + +L+
Sbjct: 494 RDLVGILR 501


>gi|126730496|ref|ZP_01746307.1| primosome assembly protein PriA [Sagittula stellata E-37]
 gi|126709229|gb|EBA08284.1| primosome assembly protein PriA [Sagittula stellata E-37]
          Length = 729

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 23/182 (12%)

Query: 278 ESAIKDILQDMSQKNRMLRIL-QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           ++A  D+L+D  Q      +L +G  GSGKT V L A+A  +  G QA+++ P   L+  
Sbjct: 199 QAAAADVLRDGQQSGTYGTVLLKGVTGSGKTEVYLEAVAECLRQGRQALVLLPEIALSA- 257

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKL 395
             EF+ +               +    RR+    +  G+A +++G   ALF   + + +L
Sbjct: 258 --EFLARVETRFGARPAEWHSGVTMTERRRVWRMVGEGRAQMVVGARSALF---LPFQRL 312

Query: 396 ILVIVDEQHRFGVQQRLKLTQKAT----------APHVLLMTATPIPRTLVLTSLGDIDI 445
            L++VDE+H    +Q   +   A              V+L +ATP      L S  + D 
Sbjct: 313 GLIVVDEEHDTSYKQEDGVLYNARDMAVLRASILGAQVVLASATP-----SLESWANADA 367

Query: 446 SK 447
            K
Sbjct: 368 GK 369


>gi|19527499|gb|AAL89864.1| RE20606p [Drosophila melanogaster]
          Length = 376

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 116/278 (41%), Gaps = 35/278 (12%)

Query: 302 VGSGKTLVALIAMAA-------AVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   L+ + +        +E G  Q VI++P   LA Q +   +K+   + + + 
Sbjct: 6   TGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIG 65

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHR--- 405
           I+ G     H+ + + R      H++I T     D      I +     V++DE  R   
Sbjct: 66  IVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD 121

Query: 406 --FGVQQRLKLTQKATAP-HVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIK 459
             F    R  +T     P H  LM +   P  +   +   L +     I         +K
Sbjct: 122 MGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVK 181

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
             I  +N+     +R K++    ++A      +E K+ ++F   +  F S  E  T+SI 
Sbjct: 182 QTIYEVNK---YAKRSKLIEILSEQADGTIVFVETKRGADF---LASFLSEKEFPTTSI- 234

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             HG      +E  +  FKNG+ K+LIAT+V   G+D+
Sbjct: 235 --HGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDI 270


>gi|52145260|ref|YP_086717.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
 gi|51978729|gb|AAU20279.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
          Length = 481

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 32/319 (10%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI-SKITEKPAG--RKPIKT 460
             F  Q    + +  T    +L +AT +P  +   S   ++  + I  K AG     I+ 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH 219

Query: 461 VIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            +  + R +E +  LK V + E   +  I  + +E  +  +R + +R N   +       
Sbjct: 220 TLFEV-REEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-DRVNYPCDK------ 271

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      + +H+ 
Sbjct: 272 -IHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRT 330

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       I    P
Sbjct: 331 -GRTGRAGNSGKAITFITP 348


>gi|15612059|ref|NP_223711.1| primosome assembly protein PriA [Helicobacter pylori J99]
 gi|8928280|sp|Q9ZKE4|PRIA_HELPJ RecName: Full=Primosomal protein N'; AltName: Full=ATP-dependent
           helicase priA; AltName: Full=Replication factor Y
 gi|4155576|gb|AAD06569.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
           J99]
          Length = 619

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 75/140 (53%), Gaps = 15/140 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + A+A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHPA-SLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      K + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKKVFKEN----LGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFGVQQR 411
             +L L+IVDE+H F  + +
Sbjct: 219 LKELGLIIVDEEHDFSYKSQ 238


>gi|319957469|ref|YP_004168732.1| dead/deah box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
 gi|319419873|gb|ADV46983.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
          Length = 477

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 143/363 (39%), Gaps = 47/363 (12%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           N + ++AQ I       P+  Q+ AI  IL+      R L I Q   G+GKT    + + 
Sbjct: 7   NFKPQLAQAIKEAGFREPSPVQKEAIPLILE-----GRDL-IAQAHTGTGKTAAFGLPVL 60

Query: 316 AAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
             +   G  +A+++ P   LA Q  + I ++ +   I    + G      +      I H
Sbjct: 61  QQLSCDGSVEALVIVPTRELATQVSDEIFRFGKALSIRTATVYGGSSYTRQ------IQH 114

Query: 374 GQ-AHIIIGTHALFQDSIQYYKLIL----VIVDEQHRF---GVQQRLK--LTQKATAPHV 423
            Q A +++ T     D +Q  K+ L    VI+DE       G    +K   T    +   
Sbjct: 115 VQSASVVVATPGRLIDLLQSGKISLSPRFVILDEADEMLDMGFLDDIKEIFTHLPESRQT 174

Query: 424 LLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           LL +AT     RTL    L D              P    I   N  +E I +L  V+ E
Sbjct: 175 LLFSATMSKEIRTLAQRILKD--------------PATVSITGGNVTNEKIRQLFYVVDE 220

Query: 482 GKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            ++   +   ++ K           +  V+R              +HG M    +E+ + 
Sbjct: 221 PERDDALVRLLDYKNPDKSIIFCRMKKEVDRLRDFLAAQGYDAKGLHGDMDQRQREATIR 280

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FKNG  ++LIAT V   G+DV D S +   +      + +H++ GR GR     + I +
Sbjct: 281 AFKNGQAEILIATDVAARGLDVNDVSHVFNYHLPFDPESYVHRI-GRTGRAGREGTAISI 339

Query: 596 YHP 598
             P
Sbjct: 340 VSP 342


>gi|156554399|ref|XP_001604593.1| PREDICTED: similar to DEAD box polypeptide 5 [Nasonia vitripennis]
          Length = 551

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 142/352 (40%), Gaps = 44/352 (12%)

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYE 339
           MS KN M+ I Q   GSGKTL  ++     + +        G  A+I+AP   LAQQ   
Sbjct: 160 MSGKN-MVGIAQ--TGSGKTLAYILPAIVHINSQQPLNRGDGPIALILAPTRELAQQIQT 216

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYK 394
               +   + +    I G  P+  + + LER       I+I T       L + +    +
Sbjct: 217 VASDFGSLSYVRNTCIFGGAPKGGQARDLER----GVEIVIATPGRLIDFLERGTTNLRR 272

Query: 395 LILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI- 448
              +++DE  R     F  Q R  + Q      VL+ +AT      +L     +D +++ 
Sbjct: 273 CTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKEVRMLAEEYLVDYTQLN 332

Query: 449 --TEKPAGRKPIKTVIIPI------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
             + + A    I  +I          ++  +++ +  V  +G K       +E KK+   
Sbjct: 333 IGSLQLAANHNILQIIDVCQEQEKETKLGTLLQEIGNVNDDGGKTIIF---VETKKK--- 386

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
              VE        +      +HG  S  +++ V+  F+N    +L+AT V   G+DV D 
Sbjct: 387 ---VENITRNIRRYGWPAVCMHGDKSQQERDYVLREFRNKKGSILVATDVAARGLDVDDV 443

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             +I  +        +H++ GR GR +   +    + P   + +   ++VL+
Sbjct: 444 RYVINFDYPSSSEDYIHRI-GRTGRSQSSGTSYAFFTPQNGRQAKDLINVLR 494


>gi|156400942|ref|XP_001639051.1| predicted protein [Nematostella vectensis]
 gi|156226176|gb|EDO46988.1| predicted protein [Nematostella vectensis]
          Length = 285

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 113/259 (43%), Gaps = 30/259 (11%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+ +AP   LA Q Y   +K+   T +   +  G +  +H+ + L+       ++++GT
Sbjct: 31  QAMCIAPTRELANQIYLEARKFAHGTMLRPVVCYGGVSVSHQLRQLQ----SGCNLLVGT 86

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLK-LTQKATAP-----HVLLMTA 428
                D I+  K+ L     +I+DE  R    G +  ++ + +    P       L+ +A
Sbjct: 87  PGRLTDFIEKGKVSLKGLQFLILDEADRMLDMGFEPAIRRIVESMGMPDKSERQTLMFSA 146

Query: 429 T---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           T    I R L    L D     +         I+  +I +   +E  +RL  +L +    
Sbjct: 147 TFPEEIQR-LAGDFLNDYLFLTVGRVGGTTSDIEQTVIEVTD-NEKRDRLTQILGDAGTD 204

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             +   +E K+ ++F ++   F S     T+SI   HG     ++E  +D F+ G C +L
Sbjct: 205 RTLV-FVESKRSADFLAI---FLSGEGFPTTSI---HGDRLQQEREEALDDFRKGRCPVL 257

Query: 546 IATTVIEVGIDVVDASIII 564
           IAT V   G+D+ D   +I
Sbjct: 258 IATNVAARGLDIDDVKHVI 276


>gi|34541680|ref|NP_906159.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis W83]
 gi|34397998|gb|AAQ67058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas
           gingivalis W83]
          Length = 427

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 126/311 (40%), Gaps = 45/311 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            G+GKT   L+ +   + AG        AVIMAP   LAQQ  + ++ ++    +    I
Sbjct: 47  TGTGKTAAYLLPILDRLSAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAI 106

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---- 406
            G        +    +A G A I+I T       L   S     +   ++DE  R     
Sbjct: 107 YGGTDGVAWEQQRRGMAMG-ADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMG 165

Query: 407 ---GVQQRLKLTQKATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTV 461
               + Q  K  Q  ++   ++ +AT  P  R L  + L              R PI+ V
Sbjct: 166 FFDDIMQIYK--QLPSSCQTVMFSATMPPKIRKLAASIL--------------RDPIE-V 208

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNFRSV---VERFNSLHEHFT 515
            I I+R  E I +   +  E +K   +    E+   K+   F S    V    S      
Sbjct: 209 EIAISRPPESIMQSAYICHEAQKLPILRKLFEQSAPKRTIIFASAKLKVRELTSTLRKMG 268

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            ++A +H  +    +E VM  FKNG   +L+AT ++  GID+ +  ++I  +  H     
Sbjct: 269 FNVADMHSDLEQSQREQVMRDFKNGYVDVLVATDIVARGIDIDNIRVVINYDIPHDPEDY 328

Query: 576 LHQLRGRVGRG 586
           +H++ GR  RG
Sbjct: 329 VHRI-GRTARG 338


>gi|325928505|ref|ZP_08189695.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
 gi|325541118|gb|EGD12670.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
          Length = 537

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 129/319 (40%), Gaps = 35/319 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + +++ A   +   QA+++AP   LA Q  E  +KY +      V  
Sbjct: 52  QAQTGTGKTAAFALPVLSNADLHQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLP 111

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF 406
           + G  P A +  AL+R      H+++GT     D +        Q   L+L   DE  R 
Sbjct: 112 VYGGQPYAQQLSALKR----GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRM 167

Query: 407 G----VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD---IDISKITEKPAGRKPIK 459
           G    V+  LK   +     +   T  P  R +  T L D   + I+  T   A  +   
Sbjct: 168 GFIDDVEAVLKKLPEQRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY 227

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
             +  ++++D +   L+V   +G   +           +  ++  E      +    + A
Sbjct: 228 WWVSGLHKLDALTRILEVEPFDGMIIF-----------ARTKAATEELAQKLQARGMAAA 276

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I+G M    +E  +   K+G   +L+AT V   G+DV   S ++  +  +   + +H++
Sbjct: 277 AINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRI 336

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       IL   P
Sbjct: 337 -GRTGRAGRNGDAILFVTP 354


>gi|320583801|gb|EFW98014.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Pichia angusta DL-1]
          Length = 396

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 143/350 (40%), Gaps = 75/350 (21%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q  AI  ++Q          I Q   G+GKT    I M   V+      QA++++
Sbjct: 45  APSAIQSRAIAQVIQGRDV------IAQAQSGTGKTATFTIGMLQVVDTSKFETQALVLS 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
               LA Q    I       +I      G        +AL +   GQ HI+ GT     D
Sbjct: 99  TTRELAAQIRSVISALGDYMKIRCHACVGGKSVGEDIRALSK---GQ-HIVSGTPGRVLD 154

Query: 389 SIQYYKLI-----LVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L      ++++DE       G Q ++    +   P   V++++AT     L LT
Sbjct: 155 MIKRRTLSIRNVKMLVLDEADELLGKGFQDQISEIYQYLPPSTQVVVVSATLPKAVLSLT 214

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +       K    P               +  +++R ++ L EG   Y+I  Q+E K++ 
Sbjct: 215 N-------KFMSDP---------------VKILVKRDELTL-EGINQYYI--QVE-KEDW 248

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + ++SL                         +FT  ++ +HG M   +++ VMD
Sbjct: 249 KFDTLCDLYDSLTITQAVIFCNTKKKVDWLSESLRKANFT--VSSMHGDMQQDERDRVMD 306

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T +   GIDV   S++I  +  +     +H++ GR GR
Sbjct: 307 EFRLGNSRVLISTDIWARGIDVQQVSLVINYDLPYDKENYVHRI-GRSGR 355


>gi|327302680|ref|XP_003236032.1| ATP-dependent RNA helicase DBP2 [Trichophyton rubrum CBS 118892]
 gi|326461374|gb|EGD86827.1| ATP-dependent RNA helicase DBP2 [Trichophyton rubrum CBS 118892]
          Length = 538

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 145/346 (41%), Gaps = 51/346 (14%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +++AP   LA Q    I K+ ++++I  
Sbjct: 167 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRN 226

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR-- 405
             + G +P+  + + L R       + I T     D ++       ++  +++DE  R  
Sbjct: 227 TCVYGGVPRGPQIRDLTR----GVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRML 282

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
              F  Q R  ++Q           AT P  +   A    +  +   +G  D+S   +IT
Sbjct: 283 DMGFEPQIRKIISQIRPDRQTCMWSATWPKDVRQLANDFLQDYIQVYIGSQDLSANHRIT 342

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +       I  V+    + D +I+ L+ ++ + K    I    +   +      + RF  
Sbjct: 343 Q-------IVEVVSEFEKRDRMIKHLERIMEDKKSKVLIFTGTKRVADD-----ITRF-- 388

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D + ++  +  
Sbjct: 389 LRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNHDYP 447

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +     +H++ GR GR     + I L+    +K +   + +L  ++
Sbjct: 448 NNSEDYVHRI-GRTGRAGANGTAITLFTTENAKQARDLVKILTESK 492


>gi|299771750|ref|YP_003733776.1| primosomal protein N' [Acinetobacter sp. DR1]
 gi|298701838|gb|ADI92403.1| primosomal protein N' [Acinetobacter sp. DR1]
          Length = 742

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +  + Q+ A + ++    Q    L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 202 LAQMPLTLNEDQKKATQHVVNAQHQYQAFL--LDGLTGSGKTEVYLHIMHEVLKRGKQVL 259

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F  ++  +    + ++   +  + R +A ++   G+A II+GT +
Sbjct: 260 VLVPEIGLTPQTISRFKSRFNCD----IALLHSGLNDSKRLQAWQQAQTGKASIILGTRS 315

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                +   +L L+I+DE+H    +Q+
Sbjct: 316 AIYTPLP--RLGLIILDEEHDLSYKQQ 340


>gi|260576816|ref|ZP_05844800.1| ATP-dependent DNA helicase, RecQ family [Rhodobacter sp. SW2]
 gi|259020959|gb|EEW24271.1| ATP-dependent DNA helicase, RecQ family [Rhodobacter sp. SW2]
          Length = 1415

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 152/366 (41%), Gaps = 49/366 (13%)

Query: 302 VGSGKTLVALI-AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G+GK++   I A++   + G   V+++P+  L     + + +   +  + V    G + 
Sbjct: 283 TGTGKSVCYQIPALSRFDKTGALTVVISPLVALMADQVQGLARAGISCAVTV---NGMLS 339

Query: 361 QAHRRKALERIAHGQAH-IIIGTHALFQDSI----QYYKLILVIVDEQH---RFGVQQR- 411
              R  AL+++  G A  ++I    L   SI    Q  ++ L ++DE H   ++G   R 
Sbjct: 340 LPERHDALDKVRMGDAAMLLISPEQLRSPSIRTVLQQREVGLWVLDEAHCISKWGHDFRP 399

Query: 412 ---------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT------EKPAGRK 456
                     + +  A AP VL +TAT  P   V+  + D   S++       +  A R 
Sbjct: 400 DYRYVSRFIKEFSGDAPAP-VLCLTATAKPE--VVRDIRDHFQSRVGVDLVLLDGGAVRT 456

Query: 457 PIKTVIIPINRIDEVIERLKVV-----LSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            +   ++P  +  ++ + L  +     L     A   C           RS  E+     
Sbjct: 457 NLSFAVLPTQKATKLTDILSAIAENLPLEGASGAVVYCAT---------RSATEKVAEFL 507

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +    +    H + S  +K  V ++F+ G  +++ AT    +GID  D  +++  +    
Sbjct: 508 KGQGLAADYFHAKRSPEEKREVQEAFRIGQLRVIAATNAFGMGIDKPDIRLVVHGDIPG- 566

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT---RLSVLKNTEDGFLIAEEDLKQR 628
            L    Q  GR GR  + +SC+LL+ P   +  ++   R  + ++     L A   +++ 
Sbjct: 567 SLENYLQEAGRAGRDRDPASCVLLFAPEDVERQFSLSARSRLARHEIGAILKALRRMEKH 626

Query: 629 KEGEIL 634
           K GE++
Sbjct: 627 KSGEVV 632


>gi|28278797|gb|AAH45237.1| LOC444845 protein [Xenopus laevis]
          Length = 404

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 128/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 71  IAQAQSGTGKTATFAISILQQIELDMKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 130

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 131 ACIGG---TNVRAEVQKLQSEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 187

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK ++   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 188 RGFKDQIYDIFQKLSSNAQVVLLSAT-MP----------ADVLEVTKKFM-RDPIR---I 232

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 233 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 292

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 293 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 343


>gi|47214951|emb|CAG10773.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 557

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 129/331 (38%), Gaps = 67/331 (20%)

Query: 302 VGSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            GSGKTL     +  +V          + +++AP   LAQQ  +   +Y + +++    I
Sbjct: 139 TGSGKTLAVTFHVCLSVCPSVPPSLRPKCLVLAPTRELAQQVQQVAAEYGRASRLKSTCI 198

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR----- 405
            G  P+  + + LER       I I T     D ++  K  L     +++DE  R     
Sbjct: 199 YGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRCTYLVLDEADRMLDMG 254

Query: 406 FGVQQRLKLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           F  Q R  + Q + +A H +L                 +D+    EK             
Sbjct: 255 FEPQIRKIVEQIRLSANHNILQI---------------VDVCSDMEKE------------ 287

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAII 521
               D++I  L+ ++SE           +E K   F     R + L             I
Sbjct: 288 ----DKLIRLLEEIMSE-----------KENKTIIFVETKRRCDELTRRMRRDGWPAMGI 332

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG  S  +++ V++ F+ G   +LIAT V   G+DV D   +I  +  +     +H++ G
Sbjct: 333 HGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-G 391

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           R  R ++  +    + P   K +   +SVL+
Sbjct: 392 RTARSQKTGTAYTFFTPNNMKQAGDLISVLR 422


>gi|260550554|ref|ZP_05824764.1| primosomal protein N [Acinetobacter sp. RUH2624]
 gi|260406469|gb|EEW99951.1| primosomal protein N [Acinetobacter sp. RUH2624]
          Length = 742

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 9/147 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +P +    Q+ A + ++    Q    L  L G  GSGKT V L  M   ++ G Q +
Sbjct: 202 LAQMPLTLNDDQKKATQHVINTQHQYQAFL--LDGLTGSGKTEVYLHIMHEVLKQGKQVL 259

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F  ++  +    + ++   +  + R +A ++   G+A II+GT +
Sbjct: 260 VLVPEIGLTPQTISRFKSRFNCD----IALLHSGLNDSKRLQAWQQAQTGKASIILGTRS 315

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQR 411
                +   +L L+I+DE+H    +Q+
Sbjct: 316 AIYTPLP--RLGLIILDEEHDLSYKQQ 340


>gi|239615215|gb|EEQ92202.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis ER-3]
          Length = 1155

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 134/343 (39%), Gaps = 53/343 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKK---YTQNTQ-I 350
           I+     SGK+L+  + M   +E     + + + P   LAQ     +K+   Y +  + I
Sbjct: 366 IISTSTSSGKSLIYQVPMLHELEQDPHSRGMYIFPTKALAQDQRRSLKELLGYIEGLEHI 425

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI----QYYKLIL-----VIVD 401
           +VE   G+ P A R    +     +A II     +   +I     +++  L     V+VD
Sbjct: 426 LVETFDGDTPMADRNTIRD-----EARIIFTNPDMLHITILPQESFWRTFLKNLKFVVVD 480

Query: 402 EQHRFG---------VQQRLKLTQKATAPH------VLLMTATPIPRTLVLTSLGDIDIS 446
           E H +          + +RL+    A               A P+     +  + D+ ++
Sbjct: 481 ELHVYNGLFGSHVAFIMRRLRRICAAVGNRRVKFISCSATVANPVEHMQTIFGIDDVKLT 540

Query: 447 KITEKPAGRKPIKTVIIPI-----------NRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            I   P+GRK       P            N I E       ++  G +    C ++ ++
Sbjct: 541 DIDGSPSGRKEFICWNTPFRDPGDPSSGRGNSIQESARLFCQLVLRGVRVIAFC-RVRKQ 599

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIH-GRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            E    +V + F SL     S   + + G  S  D+  +      G    ++AT  +E+G
Sbjct: 600 CELLLSAVRDEFKSLDRINVSRFVMGYRGGYSPQDRRKIERDMFEGKLLGIVATNALELG 659

Query: 555 IDV--VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +D+  +DA   +I +   + ++ L Q  GR GR  + S  IL+
Sbjct: 660 VDIGSLDA---VITHGFPYSISNLRQQSGRAGRRNKDSVSILV 699


>gi|296817029|ref|XP_002848851.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480]
 gi|302506162|ref|XP_003015038.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371]
 gi|238839304|gb|EEQ28966.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480]
 gi|291178609|gb|EFE34398.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371]
 gi|326469057|gb|EGD93066.1| eukaryotic initiation factor 4A-12 [Trichophyton tonsurans CBS
           112818]
 gi|326480615|gb|EGE04625.1| eukaryotic initiation factor 4A-12 [Trichophyton equinum CBS
           127.97]
          Length = 399

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 144/354 (40%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVLRESQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + LE   HGQ H++ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLE---HGQ-HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT     L +T
Sbjct: 157 MIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMT 216

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +       K    P              RI  +++R ++ L EG K Y+I     EK+E 
Sbjct: 217 T-------KFMTDPV-------------RI--LVKRDELTL-EGLKQYFIAV---EKEEW 250

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 251 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 308

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 309 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 357


>gi|91205891|ref|YP_538246.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii RML369-C]
 gi|157826748|ref|YP_001495812.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii OSU 85-389]
 gi|91069435|gb|ABE05157.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii RML369-C]
 gi|157802052|gb|ABV78775.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii OSU 85-389]
          Length = 411

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 137/313 (43%), Gaps = 33/313 (10%)

Query: 302 VGSGKTLVALIAMAAA-VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGKTL  L+ +  A ++     +I+ P   LA Q    + K T + +I   ++ G  P
Sbjct: 45  TGSGKTLAYLLPVINAFIKDKTTTLILVPTRELATQICSTLNKVTTSFKINNAVLIGGEP 104

Query: 361 QAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRL 412
              +   L++       +IIGT       L + S++  ++ + ++DE  R    G++++L
Sbjct: 105 MPKQFTQLKK----NPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQL 160

Query: 413 KLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +   K       VL+ +AT +P+ ++  S   ++            P++  +   N+   
Sbjct: 161 EEINKFLPEKRQVLMFSAT-MPKHIISLSQKYLN-----------NPVRITVGATNKAAA 208

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRM 525
            I++  V +++ +K   +  Q+ +++ S       +   ++   +  +       IHG +
Sbjct: 209 EIKQESVHITDKEKFTELNKQLGDREGSVIIFVKTKRSADQLAKMLRYENHKAEAIHGDL 268

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S   ++ V+ SF+    ++++AT V   G+D+     +I  +        LH++ GR GR
Sbjct: 269 SQRQRDRVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRI-GRTGR 327

Query: 586 GEEISSCILLYHP 598
                + +    P
Sbjct: 328 AGAKGNALSFISP 340


>gi|90580879|ref|ZP_01236681.1| primosome assembly protein PriA [Vibrio angustum S14]
 gi|90437950|gb|EAS63139.1| primosome assembly protein PriA [Vibrio angustum S14]
          Length = 733

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 21/152 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   + AG QA+I+ P IG+  Q    F +++     + +E +
Sbjct: 221 LLEGVTGSGKTEVYLNLLEPVLAAGKQALILVPEIGLTPQTINRFRRRFN----VPLETV 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              +  + R  A       QA IIIGT  ALF     +  L ++IVDE+H    +Q+  L
Sbjct: 277 HSGLNDSERMAAWLAGRDNQAGIIIGTRSALF---TPFANLGIIIVDEEHDASYKQQDSL 333

Query: 415 -----------TQKATAPHVLLMTATPIPRTL 435
                        K   P ++L +ATP   TL
Sbjct: 334 RYHARDLAVMRANKENIP-IILGSATPALETL 364


>gi|327349662|gb|EGE78519.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1155

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 134/343 (39%), Gaps = 53/343 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKK---YTQNTQ-I 350
           I+     SGK+L+  + M   +E     + + + P   LAQ     +K+   Y +  + I
Sbjct: 366 IISTSTSSGKSLIYQVPMLHELEQDPHSRGMYIFPTKALAQDQRRSLKELLGYIEGLEHI 425

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI----QYYKLIL-----VIVD 401
           +VE   G+ P A R    +     +A II     +   +I     +++  L     V+VD
Sbjct: 426 LVETFDGDTPMADRNTIRD-----EARIIFTNPDMLHITILPQESFWRTFLKNLKFVVVD 480

Query: 402 EQHRFG---------VQQRLKLTQKATAPH------VLLMTATPIPRTLVLTSLGDIDIS 446
           E H +          + +RL+    A               A P+     +  + D+ ++
Sbjct: 481 ELHVYNGLFGSHVAFIMRRLRRICAAVGNRRVKFISCSATVANPVEHMQTIFGIDDVKLT 540

Query: 447 KITEKPAGRKPIKTVIIPI-----------NRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            I   P+GRK       P            N I E       ++  G +    C ++ ++
Sbjct: 541 DIDGSPSGRKEFICWNTPFRDPGDPSSGRGNSIQESARLFCQLVLRGVRVIAFC-RVRKQ 599

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIH-GRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            E    +V + F SL     S   + + G  S  D+  +      G    ++AT  +E+G
Sbjct: 600 CELLLSAVRDEFKSLDRINVSRFVMGYRGGYSPQDRRKIERDMFEGKLLGIVATNALELG 659

Query: 555 IDV--VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +D+  +DA   +I +   + ++ L Q  GR GR  + S  IL+
Sbjct: 660 VDIGSLDA---VITHGFPYSISNLRQQSGRAGRRNKDSVSILV 699


>gi|313497676|gb|ADR59042.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida BIRD-1]
          Length = 440

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 156/355 (43%), Gaps = 58/355 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAVEAGG---QAVI 326
           PT  Q +AI   LQ      R LR+     GSGKT   ++ L+     ++ G    +++I
Sbjct: 23  PTPVQAAAIPLALQ-----GRDLRV-TAQTGSGKTAAFVLPLLNRLVDLKGGRVEIRSLI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + ++ ++Q T +   ++TG      +   L ++      ++IGT    
Sbjct: 77  LLPTRELAQQTLKQVQLFSQFTYVKAGLVTGGEDFKEQAAMLRKVPD----VLIGTPGRL 132

Query: 387 QDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATA--PHVLLMTATPIPRTLV 436
            + +    L L     +I+DE  R    G  + ++   K        LL +AT       
Sbjct: 133 LEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGG---- 188

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE--RLKVVLSEGKK-----AYWIC 489
             +L DI I K+ + P          + +N + ++ E  R +++ ++  +     A W+ 
Sbjct: 189 -AALRDI-IGKVLKDPEH--------LMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLL 238

Query: 490 PQIEEKKE---SNFRSVVERFNSLHEHFTSSIA---IIHGRMSDIDKESVMDSFKNGTCK 543
                 K    +N R++ +R   ++ H  +      ++HG     D++  ++ FK G+ K
Sbjct: 239 ANETFDKAIIFTNTRAMADR---IYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSK 295

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
           +L+AT V   G+D+    ++I  +    G   +H++ GR GR G E  +  L+ H
Sbjct: 296 VLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRV-GRTGRAGGEGLAISLITH 349


>gi|313203400|ref|YP_004042057.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312442716|gb|ADQ79072.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 449

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 132/322 (40%), Gaps = 47/322 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    GSGKTL  LI +  ++       QA+++ P   LAQQ  +  +  + +T   V 
Sbjct: 46  ILLSPTGSGKTLAYLIPLLLSLNPDIQKVQALVLVPTRELAQQIEQVWR--SMSTGYKVN 103

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGV 408
           I  G  P    ++ L   A   A ++IGT    QD I+     +     +++DE   F  
Sbjct: 104 ICFGGRPSNAEKREL---AFPPA-VLIGTPGRLQDHIERANFEIDAIRTLVLDE---FDK 156

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD-IDISKITEKPAGRKPIKTVIIPINR 467
              +  T +  A    +++  P     +LTS  D + I   T     + PI+   +  + 
Sbjct: 157 SLEMGFTDQMEA----IISRIPALNKRILTSATDAVAIPPFT---GIQNPIR---LDFSE 206

Query: 468 IDEVIERLKVVLSEGKKA------YWICPQIEEKKE---SNFRSVVERFNSLHEHFTSSI 518
            D V+  LK+   +G         Y +   +         N R  VE+ ++   +     
Sbjct: 207 KDRVLAGLKIFSIKGNNNDKMDLLYRLLCYLGNDSSLVFCNQRDTVEKVSAYLTNRKLKN 266

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA---- 574
              HG++   ++E  +  F+NG+C   I+T +   G+D+ +     I N  HF +     
Sbjct: 267 EFFHGKLEQPERERALSKFRNGSCTTFISTDLASRGLDIPE-----IRNVIHFDVPVRND 321

Query: 575 QLHQLRGRVGR-GEEISSCILL 595
           +     GR  R   E S+ +LL
Sbjct: 322 EFIHRNGRTARMSTEGSAFVLL 343


>gi|301058161|ref|ZP_07199213.1| primosomal protein N' [delta proteobacterium NaphS2]
 gi|300447793|gb|EFK11506.1| primosomal protein N' [delta proteobacterium NaphS2]
          Length = 819

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 7/129 (5%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q +A+ +I   + Q+     +L G  GSGKT V   A+   +E G QA++MAP  IL   
Sbjct: 277 QLTALAEIKNQLDQRTFGSFLLYGVTGSGKTEVYARAIEYLIEQGRQAILMAP-EILLAG 335

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKL 395
           + E + ++    +  V +    + +  R     R+A G+  ++IG   ALF   +   +L
Sbjct: 336 YLEGVLRHRLGKR--VALYHSKLSKRERLYQWSRMAAGEVDLVIGARSALF---VPLPRL 390

Query: 396 ILVIVDEQH 404
            L+IVDE+H
Sbjct: 391 GLIIVDEEH 399


>gi|291165171|gb|ADD81190.1| vasa [Scomber australasicus]
          Length = 645

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/382 (19%), Positives = 155/382 (40%), Gaps = 68/382 (17%)

Query: 258 EGKIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           E ++ + + +N+  S    PT  Q+  I  I    S    ++   Q   GSGKT   L+ 
Sbjct: 212 EAQLCESLRKNVSKSGYVKPTPVQKHGIPII----SAGRDLMACAQ--TGSGKTAAFLLP 265

Query: 314 MAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           +   + A G            +A+I+AP   L  Q Y   +K+   T +   ++ G +  
Sbjct: 266 ILQQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVST 325

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
            H+ + +ER      +I+ GT     D      +   KL  +++DE  R        +  
Sbjct: 326 GHQIRDIER----GCNIVCGTPGRLLDMIGRGKVGVSKLRYLVLDEADR--------MLD 373

Query: 417 KATAPHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK--------------PAGRK 456
               P +  +  +P +P     +TL+ ++    DI ++                      
Sbjct: 374 MGFEPDMRRLVGSPGMPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACS 433

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            ++   I + +  +  + L ++ + G +   +   +E K++++F   +  F    +  T+
Sbjct: 434 DVEQTFIQVTKFSKREQLLDLLKTTGMERTMVF--VETKRQADF---IATFLCQEKVPTT 488

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           SI   HG     ++E  +  F++G C +++AT+V   G+D+ D   ++  +  +     +
Sbjct: 489 SI---HGDREQREREQALADFRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPNNIDEYV 545

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           H++ GR GR       +  Y P
Sbjct: 546 HRI-GRTGRCGNTGRAVSFYDP 566


>gi|218676922|ref|YP_002395741.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus LGP32]
 gi|218325190|emb|CAV27104.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 468

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 133/310 (42%), Gaps = 39/310 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I QG  GSGKT    + +   +       Q++++ P   LA Q  + I+   +    I V
Sbjct: 54  IGQGKTGSGKTAAFGLGVLQNLRVKRFRVQSLVLCPTRELADQVAKEIRTLARGIHNIKV 113

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF- 406
             + G MP   +  +LE   HG AHI++GT       L +D I   +L  +++DE  R  
Sbjct: 114 LTLCGGMPMGPQIGSLE---HG-AHILVGTPGRILDHLERDRIDLSELNTLVLDEADRML 169

Query: 407 --GVQQRLKLTQKATAP---HVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPI 458
             G Q  L    +A AP     LL +AT  P+ +   +   + + ++ K+ E       I
Sbjct: 170 EMGFQDALDAVIEA-APKDRQTLLFSAT-FPKQIKSVADRIMNNPEMVKV-ESTHDHSSI 226

Query: 459 KTVIIPINRIDEVIERLKVVL--SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +     +   +   + L+++L   + + A   C         N +  V+  N    H   
Sbjct: 227 QQHFYKVEGTEARDDALELMLLHHQPESAVVFC---------NTKKEVQNVNDELSHRGF 277

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S+  +HG M   +++  +  F N T  +L+AT V   G+DV +   +   N E     ++
Sbjct: 278 SVIELHGDMEQRERDQALVQFSNKTISILVATDVAARGLDVDNLDAVF--NFELSRDPEV 335

Query: 577 HQLR-GRVGR 585
           H  R GR GR
Sbjct: 336 HVHRIGRTGR 345


>gi|167035034|ref|YP_001670265.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166861522|gb|ABY99929.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 453

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 156/355 (43%), Gaps = 58/355 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAVEAGG---QAVI 326
           PT  Q +AI   LQ      R LR+     GSGKT   ++ L+     ++ G    +++I
Sbjct: 36  PTPVQAAAIPLALQ-----GRDLRV-TAQTGSGKTAAFVLPLLNRLVDLKGGRVEIRSLI 89

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + ++ ++Q T +   ++TG      +   L ++      ++IGT    
Sbjct: 90  LLPTRELAQQTLKQVQLFSQFTYVKAGLVTGGEDFKEQAAMLRKVPD----VLIGTPGRL 145

Query: 387 QDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATA--PHVLLMTATPIPRTLV 436
            + +    L L     +I+DE  R    G  + ++   K        LL +AT       
Sbjct: 146 LEQLNAGNLDLSHVKVLILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGG---- 201

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE--RLKVVLSEGKK-----AYWIC 489
             +L DI I K+ + P          + +N + ++ E  R +++ ++  +     A W+ 
Sbjct: 202 -AALRDI-IGKVLKDPEH--------LMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLL 251

Query: 490 PQIEEKKE---SNFRSVVERFNSLHEHFTSSIA---IIHGRMSDIDKESVMDSFKNGTCK 543
                 K    +N R++ +R   ++ H  +      ++HG     D++  ++ FK G+ K
Sbjct: 252 ANETFDKAIIFTNTRAMADR---IYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSK 308

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
           +L+AT V   G+D+    ++I  +    G   +H++ GR GR G E  +  L+ H
Sbjct: 309 VLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRV-GRTGRAGGEGLAISLITH 362


>gi|74137238|dbj|BAE22002.1| unnamed protein product [Mus musculus]
          Length = 229

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  
Sbjct: 116 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA- 174

Query: 581 GRVGR 585
           GR GR
Sbjct: 175 GRTGR 179


>gi|330447097|ref|ZP_08310747.1| primosomal protein N' [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491288|dbj|GAA05244.1| primosomal protein N' [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 733

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 21/152 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   + AG QA+I+ P IG+  Q    F +++     + +E +
Sbjct: 221 LLEGVTGSGKTEVYLNLLEPVLAAGKQALILVPEIGLTPQTINRFRRRFN----VPLETV 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              +  + R  A       QA IIIGT  ALF     +  L ++IVDE+H    +Q+  L
Sbjct: 277 HSGLNDSERMAAWLAGRDNQAGIIIGTRSALF---TPFANLGIIIVDEEHDPSYKQQDSL 333

Query: 415 -----------TQKATAPHVLLMTATPIPRTL 435
                        K   P V+L +ATP   TL
Sbjct: 334 RYHARDLAVMRANKENIP-VVLGSATPALETL 364


>gi|327537759|gb|EGF24464.1| primosome assembly protein PriA [Rhodopirellula baltica WH47]
          Length = 796

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 21/209 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  QE+A+  I   +        +L G  GSGKT V + A+   V+  G A+++ P I +
Sbjct: 259 TAQQENALSRINSAVDSGRGRTLLLHGVTGSGKTEVYIQAIEHVVKQAGSAIVLVPEISL 318

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F  ++ QN    V ++   M  + R    +RI  G+  ++IG   A+F     
Sbjct: 319 TPQTRGRFEDRF-QN----VAVLHSQMSASERHFHWQRIRRGEVQVVIGPRSAVF---AP 370

Query: 392 YYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
              L L+++DE+H          R+  ++       A    ++L +ATP       T  G
Sbjct: 371 LPNLGLIVIDEEHDTSFKQDKQPRYHARKVAHARAMALGIPLVLGSATPSMEAWHATQTG 430

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDE 470
             ++  ++E+  G +P+  V +   R+ E
Sbjct: 431 HAELVTMSER-VGNRPMPDVQLVDLRVKE 458


>gi|114590950|ref|XP_001155683.1| PREDICTED: eukaryotic translation initiation factor 4A isoform 2
           [Pan troglodytes]
          Length = 369

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 83  IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 142

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 143 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 199

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK  T+  V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 200 RGFKDQIYEIFQKLNTSIQVVLLSAT-MP----------TDVLEVTKKFM-RDPIR---I 244

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 245 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHA 304

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 305 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 355


>gi|322706990|gb|EFY98569.1| DEAD-box helicases & Helicase superfamily domain-containing protein
           [Metarhizium anisopliae ARSEF 23]
          Length = 397

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 143/361 (39%), Gaps = 89/361 (24%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLR--------------------------- 296
           K L ++P    +S      D   DMS K  +LR                           
Sbjct: 5   KGLEDVPEGQIESNYDETVDSFDDMSLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDV 64

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +        +   
Sbjct: 65  IAQAQSGTGKTATFSISVLQKIDPTVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECH 124

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        KAL+        +++GT     D IQ   L        +L   DE   
Sbjct: 125 ACIGGTSVRDDMKALQ----DGPQVVVGTPGRVHDMIQRRFLKTDAMKMFVLDEADEMLS 180

Query: 406 FGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G   ++    +L  ++T   V+L++AT +P+          D+ ++T +   R P++ +
Sbjct: 181 RGFTDQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTRFM-RDPVRIL 226

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------R 506
           +    + DE+         EG K ++I  + EE K      + E               +
Sbjct: 227 V----KKDELT-------LEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 275

Query: 507 FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L E  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++
Sbjct: 276 VDWLTEKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 335

Query: 564 I 564
           I
Sbjct: 336 I 336


>gi|313238237|emb|CBY13329.1| unnamed protein product [Oikopleura dioica]
          Length = 598

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 131/342 (38%), Gaps = 46/342 (13%)

Query: 300 GDVGSGKTL----------VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            + GSGKT+          +  +  +     G QA+I+ P   LA Q ++ I+  ++ T 
Sbjct: 185 AETGSGKTIAYGLPILQKIIGYLDFSEEKTVGPQALILCPTRELAMQVHDSIRLVSKFTS 244

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------------SIQYYKLI 396
           +    I G M    +++ L +I   +  II+ T   F +             SI+Y+   
Sbjct: 245 VKTTAIVGGMAAEKQQRVLSKI---RPEIIVATPGRFWELRETGQEYLQNLRSIKYF--- 298

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
             +VDE  R   +       K                TL LT +    + ++  K    K
Sbjct: 299 --VVDEADRMAEKGHFAELDKIVGTLSRESQKFVFSATLTLTHVNSDRMDRMKIKTETTK 356

Query: 457 P-IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-----SNFRSVVERFNSL 510
             IK ++  I ++         +L+E  K  W+   +++++       N  + V R   L
Sbjct: 357 SKIKKLMKAIVKVS--------ILTEKDKDLWLYFMLKKQEGRSIVFCNSITGVLRLRGL 408

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            +     +  +H  +    +   +D+F+  T  +L+AT V   G+D+ +   II     +
Sbjct: 409 LDTLKLPVRSLHANLKQKQRLKNLDAFRKSTDGILLATDVAARGLDIPNVDQIIHFQFPN 468

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
                +H+  GR GR     + + L      KN    L  LK
Sbjct: 469 AAETYVHR-SGRCGRAGRSGTAVTLLKDSDVKNYKKVLHTLK 509


>gi|315049467|ref|XP_003174108.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893]
 gi|311342075|gb|EFR01278.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893]
          Length = 403

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 146/354 (41%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 51  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVLRESQALVLS 104

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + LE   HGQ H++ GT     D
Sbjct: 105 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLE---HGQ-HVVSGTPGRVAD 160

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT +P      
Sbjct: 161 MIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT-LP------ 213

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E 
Sbjct: 214 ----YDVLDMTTKFMT-DPVRILV----------KRDELTL-EGLKQYFIAV---EKEEW 254

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 255 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 312

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 313 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 361


>gi|312977735|ref|ZP_07789482.1| competence protein F [Lactobacillus crispatus CTV-05]
 gi|310895474|gb|EFQ44541.1| competence protein F [Lactobacillus crispatus CTV-05]
          Length = 388

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 147/348 (42%), Gaps = 60/348 (17%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q++    ++Q+  Q+   L  +    G+GKT +    +A  ++ G +A I  P I +
Sbjct: 55  TPLQQNISDKLVQNFEQRKNTL--VHAVTGAGKTEMLFQLIARCMKKGQRACIATPRIDV 112

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK----ALERIAHGQAHIIIGTHALFQD 388
           + +    F   + Q     VEI      + H R+     LE++       I  TH L   
Sbjct: 113 VNELFPRFSAAFAQ-----VEI-----GKYHGREFKEIGLEQLT------ICTTHQL--- 153

Query: 389 SIQYYKLI-LVIVDE----------QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +++Y+   L+++DE          Q  F  +  +K T        + +TATP    L+ 
Sbjct: 154 -MKFYRAFDLLVIDEVDSFPYVGNPQLHFAAKNAVKTTGTR-----MYLTATPTNDLLLE 207

Query: 438 TSLGDIDISKITEK-PAGRKPI---KTVIIPINRIDEV----IERLKVVLSEGKKAYWIC 489
              G ++I ++  +   G  P+   +  I P  R  ++    ++ +K V+  G       
Sbjct: 208 AKTGKLEILRLNRRFHGGLLPVPRERLFIRPFLRKGQIHPKLMQEIKKVIQSGHPLLLFV 267

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           P+IEE              +L +   + I +      D  +   + +F++    LL+ TT
Sbjct: 268 PRIEEIPLYQ--------EALRKKLQNKIKLAGVHAQDPQRLEKVQAFRDRKYDLLLTTT 319

Query: 550 VIEVGIDVVDASIIIIENAEH-FGLAQLHQLRGRVGRGEEISSCILLY 596
           ++E G+   +  +III   +  +  A L Q+ GRVGR  +  + ++LY
Sbjct: 320 ILERGVTFKNVWVIIIAADDAIYTAASLVQIAGRVGRAHDDQTGLVLY 367


>gi|306826916|ref|ZP_07460216.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           pyogenes ATCC 10782]
 gi|304430934|gb|EFM33943.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           pyogenes ATCC 10782]
          Length = 453

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 132/314 (42%), Gaps = 29/314 (9%)

Query: 302 VGSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +       +A  Q VI AP   LA Q ++  K+  ++ Q   EI   N
Sbjct: 47  TGSGKTHTFLLPIFEKLDETKAEVQVVITAPSRELATQIFDACKQIAKHFQ--EEIRLAN 104

Query: 359 -MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRL 412
            +    + + +E++   Q HI+IGT     D ++      +K    +VDE         L
Sbjct: 105 YVGGTDKLRQIEKLKGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFL 164

Query: 413 KLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               K  A       +L+ +AT IP+ L         + K    P   + IKT  +  + 
Sbjct: 165 DTVDKIAASLPKSVQILVFSAT-IPQKLQPF------LKKYLTNPVIEQ-IKTKTVIADT 216

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGR 524
           ID  +   K     G+    I   ++      F +  ER + LH   T++   +A IHG 
Sbjct: 217 IDNWLVSTKGRDKNGQ-LLEILKTMQPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGG 275

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +   +++ +M+  K    + ++AT +   GID+   S +I +         +H++ GR G
Sbjct: 276 IPPRERKRIMNQVKKLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTG 334

Query: 585 RGEEISSCILLYHP 598
           R     + I LY P
Sbjct: 335 RNGMAGTAITLYQP 348


>gi|227328700|ref|ZP_03832724.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 434

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 136/317 (42%), Gaps = 46/317 (14%)

Query: 302 VGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIVEII 355
            GSGKT    + L+      +   QA+++ P   LA Q       + ++ QN +I+   +
Sbjct: 24  TGSGKTAAFGIGLLDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILT--L 81

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQ 410
            G  P   +   L+ + H   HI++GT    QD     S+    L ++++DE  R     
Sbjct: 82  CGGQPMGQQ---LDSLVHA-PHIVVGTPGRIQDHLRKQSLSLDSLKVLVLDEADRM---- 133

Query: 411 RLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
              L    T     +++ TP  R TL+ ++    +I +I+ +   R+P +  +       
Sbjct: 134 ---LDMGFTDAIDDVISYTPTDRQTLLFSATYPEEIEQISAR-VQRQPQRFEVADGVEEP 189

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNF------RSVVERFNSLHEHFTSSIAIIHG 523
            + +R      E +    I      +  S        R     F++L     S ++ +HG
Sbjct: 190 AIEQRFYETTKEQRLPLLIAILGHYQPASCVVFCNTKRDCQSVFDALDMRGIS-VSALHG 248

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA---QLHQLR 580
            +   D++ V+  F N +C++L+AT V   G+D+ +  +++     +F LA   ++H  R
Sbjct: 249 DLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELELVV-----NFELAFDPEVHVHR 303

Query: 581 -GRVGR----GEEISSC 592
            GR GR    G  +S C
Sbjct: 304 IGRTGRAGTKGLAVSLC 320


>gi|255560866|ref|XP_002521446.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539345|gb|EEF40936.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 781

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 152/374 (40%), Gaps = 63/374 (16%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L+             + G   ++++P   LA Q  +   K+ ++++I    
Sbjct: 209 TGSGKTLGYLLPGFIHLKRCRNDPQLGPTVLVLSPTRELATQIQDEAVKFGRSSRISCTC 268

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---- 405
           + G  P+  + K L+R       I++ T     D ++  ++ L     +++DE  R    
Sbjct: 269 LYGGAPKGPQLKELDR----GVDIVVATPGRLNDILEMRRISLSQVSYLVLDEADRMLDM 324

Query: 406 -FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            F  Q R  + +  +    L+ TAT  PR          ++ KI    A    +  V + 
Sbjct: 325 GFEPQIRKIVKEVPSRRQTLMYTAT-WPR----------EVRKI----AADLLVNPVQVN 369

Query: 465 INRIDEVIERLKV-----VLSEGKKAYWICPQIEEKKESN-----FRSVVERFNSLHEHF 514
           I  +DE++    +     VL+  +K +    QI   +E       F S  +  + L  + 
Sbjct: 370 IGNVDELVANKSITQYIEVLAPMEK-HRRLEQILRSQEPGSKIIIFCSTKKMCDQLARNL 428

Query: 515 TSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           T +   A IHG  S  +++ V+  F+ G   +L+AT V   G+D+ D  ++I  +     
Sbjct: 429 TRTFGAAAIHGDKSQSERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVINYDFPTGV 488

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
              +H++ GR GR          +    +K +   + VL           E   QR   E
Sbjct: 489 EDYVHRI-GRTGRAGATGVAYTFFGDQDAKYASDLIKVL-----------EGASQRVPPE 536

Query: 633 I--LGIKQSGMPKF 644
           I  +  + SGM KF
Sbjct: 537 IRDMASRGSGMSKF 550


>gi|241204745|ref|YP_002975841.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858635|gb|ACS56302.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 651

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 130/315 (41%), Gaps = 44/315 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  +  G +         A+++AP   LA Q    ++   + 
Sbjct: 41  LVSAQTGSGKTVAFGLALAPTLLEGRERFGNAAAPLALVIAPTRELALQVKRELEWLFEM 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399
           T  ++    G M     R++LER     AHI++GT     D I+   L        +L  
Sbjct: 101 TGAVIVSCVGGMDIRSERRSLER----GAHIVVGTPGRLCDHIRRRALDMSELKAAVLDE 156

Query: 400 VDEQHRFGVQQRLKLTQKATAP---HVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGR 455
            DE    G ++ L+    A AP     L+ +AT +P  +  L      D  +I+     +
Sbjct: 157 ADEMLDLGFREDLEFILDA-APDERRTLMFSAT-VPAAIAKLAKSYQRDAVRISTAAEEK 214

Query: 456 KPIKT-----VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           + I       ++ P +R + +I  L+    E   A   C         + R+ V    + 
Sbjct: 215 QHIDIEYRALMVAPSDRENAIINVLRYY--EATNAIVFC---------STRAAVNHLTAR 263

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             +   ++  + G ++  ++   + + ++G  ++ IAT V   GID+    ++I  +   
Sbjct: 264 FNNRNFAVVALSGELTQNERTHALQAMRDGRARVCIATDVAARGIDLPGLDLVIHADLPT 323

Query: 571 FGLAQLHQLRGRVGR 585
                LH+  GR GR
Sbjct: 324 NPDTLLHR-SGRTGR 337


>gi|195385611|ref|XP_002051498.1| vas [Drosophila virilis]
 gi|21361025|gb|AAM49782.1|AF513908_1 DEAD-box RNA helicase [Drosophila virilis]
 gi|194147955|gb|EDW63653.1| vas [Drosophila virilis]
          Length = 625

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 133/327 (40%), Gaps = 52/327 (15%)

Query: 302 VGSGKTLVALIAM-------AAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   L+ +       +  +E G  QAVI++P   LA Q +   +K++  T + + 
Sbjct: 257 TGSGKTAAFLLPILNNILDESHDLEIGKPQAVIVSPTRELAIQIFNEARKFSYTTYLKIS 316

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHR--- 405
           I+ G     ++ + + +      H++I T     D      I +     +++DE  R   
Sbjct: 317 IVYGGTSFKYQNECITK----GCHVLIATPGRLLDFVDRTFITFDDTRFIVLDEADRMLD 372

Query: 406 --FGVQQRLKLTQKATAP-HVLLMTATPIP-----------RTLVLTSLGDIDISKITEK 451
             F    R  +  +   P H  LM +   P           +  V  ++G +        
Sbjct: 373 MGFSDSMRKIMHHQTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVTIGVV-------- 424

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                 ++  +  +N+ ++   +L  +L EG     +   +E K+ ++F   +  F S  
Sbjct: 425 GGACSDVQQTVYEVNKFNKR-SKLMEILREGADGTIVF--VETKRGADF---LASFFSET 478

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E  T+SI   HG      +E  +  FK GT K+LIAT+V   G+D+ +   +I  +    
Sbjct: 479 EFPTTSI---HGDRLQSQREQALRDFKTGTMKVLIATSVASRGLDIKNVKHVINYDMPTN 535

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHP 598
               +H++ GR GR          + P
Sbjct: 536 IDDYVHRI-GRTGRVGNSGRATSFFDP 561


>gi|176866061|ref|NP_001116510.1| eukaryotic initiation factor 4A-II isoform c [Mus musculus]
 gi|74003462|ref|XP_860499.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 7 [Canis familiaris]
 gi|74003474|ref|XP_860687.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 12 [Canis familiaris]
 gi|114590938|ref|XP_001156093.1| PREDICTED: similar to initiation factor 4AII isoform 7 [Pan
           troglodytes]
 gi|26353724|dbj|BAC40492.1| unnamed protein product [Mus musculus]
 gi|74215693|dbj|BAE21449.1| unnamed protein product [Mus musculus]
          Length = 362

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 74  IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 133

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 134 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 190

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK  T+  V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 191 RGFKDQIYEIFQKLNTSIQVVLLSAT-MP----------TDVLEVTKKFM-RDPIR---I 235

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 236 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHA 295

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 296 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 346


>gi|26991447|ref|NP_746872.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986522|gb|AAN70336.1|AE016675_6 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 443

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 128/285 (44%), Gaps = 31/285 (10%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHI 378
           +A+++ P   LA+Q +  +++Y +N  +    + G +   PQ  R R+ ++ +      +
Sbjct: 76  RALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMRLRRGVDLLVATPGRL 135

Query: 379 IIGTHALF-QDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP---HVLLMTATPI 431
           +     LF Q+++++ ++  +++DE  R    G  + L+ +  A  P     LL +AT  
Sbjct: 136 L----DLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQ-SVYAALPRKRQTLLFSATFS 190

Query: 432 PRTLVLTSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            +  +L  L   D   I   P  A    +K  ++P+++      +  +     +K  W  
Sbjct: 191 DQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKK----RKADLFCHLLRKQRWKQ 246

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +  K  +    +VER   L E   +    IHG      ++  +DSFK    ++L+AT 
Sbjct: 247 VLVFAKTRNGVDQLVERL--LAEGVNADG--IHGDRPQATRQRALDSFKAREVQVLVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
           V   G+D+ D  +++  +        +H++ GR GR    GE IS
Sbjct: 303 VAARGLDIDDLPLVVNLDLPIVAEDYVHRI-GRTGRAGNKGEAIS 346


>gi|315040958|ref|XP_003169856.1| ATP-dependent RNA helicase DBP2 [Arthroderma gypseum CBS 118893]
 gi|311345818|gb|EFR05021.1| ATP-dependent RNA helicase DBP2 [Arthroderma gypseum CBS 118893]
          Length = 558

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 145/346 (41%), Gaps = 51/346 (14%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +++AP   LA Q    I K+ ++++I  
Sbjct: 186 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRN 245

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR-- 405
             + G +P+  + + L R       + I T     D ++       ++  +++DE  R  
Sbjct: 246 TCVYGGVPRGPQIRDLTR----GVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRML 301

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
              F  Q R  ++Q           AT P  +   A    +  +   +G  D+S   +IT
Sbjct: 302 DMGFEPQIRKIISQIRPDRQTCMWSATWPKDVRQLANDFLQDYIQVYIGSQDLSANHRIT 361

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +       I  V+    + D +I+ L+ ++ + K    I    +   +      + RF  
Sbjct: 362 Q-------IVEVVSEFEKRDRMIKHLERIMEDKKSKVLIFTGTKRVADD-----ITRF-- 407

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D + ++  +  
Sbjct: 408 LRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNHDYP 466

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +     +H++ GR GR     + I L+    +K +   + +L  ++
Sbjct: 467 NNSEDYVHRI-GRTGRAGANGTAITLFTTENAKQARDLVKILTESK 511


>gi|301056918|ref|YP_003795129.1| ATP-dependent RNA helicase [Bacillus anthracis CI]
 gi|300379087|gb|ADK07991.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 481

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 32/319 (10%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI-SKITEKPAG--RKPIKT 460
             F  Q    + +  T    +L +AT +P  +   S   ++  + I  K AG     I+ 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH 219

Query: 461 VIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            +  + R +E +  LK V + E   +  I  + +E  +  +R + +R N   +       
Sbjct: 220 TLFEV-REEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-DRVNYPCDK------ 271

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      + +H+ 
Sbjct: 272 -IHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRT 330

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       I    P
Sbjct: 331 -GRTGRAGNSGKAITFITP 348


>gi|296108935|ref|YP_003615884.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
           ME]
 gi|295433749|gb|ADG12920.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
           ME]
          Length = 857

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 147/367 (40%), Gaps = 46/367 (12%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           N + K    +L  + F   K Q  A+K + +          +L     SGK+ V  +++ 
Sbjct: 26  NFKNKEVNALLEKLNFKLYKHQVEALKALYEGRDI------LLTTPTASGKSEVFRLSIL 79

Query: 316 AAV--EAGGQAVIMAPIGILAQQHYE----FIKKYTQ--NTQIIVEIITGNMPQAHRRKA 367
                E   + +++ P   L    YE     I+K+ +  N  + +E++TG+   + R K 
Sbjct: 80  DNFLSEREDKYLLIFPTRALIYNQYEKFKYIIEKFKELINEGLKIEVLTGDTSYSKRLKI 139

Query: 368 LERIAHGQAHIIIGTHALFQDSI----QYYKLIL-----VIVDEQHRFG------VQQRL 412
           LE     +  I+I T  +    I    + Y+ +L     ++VDE H +       V    
Sbjct: 140 LEE----KPEILIVTPDMLHFQILRFRERYRWLLDNLRYLVVDEIHEYNGVFGANVSYVF 195

Query: 413 KLTQKATAPHVLLMTAT-PIPRTLVLTSLG-DIDISKITEKPAGRKPIKTVIIPINRIDE 470
           K     T P ++ ++AT   P++   T    D ++      P+ +K    ++     IDE
Sbjct: 196 KRLLSLTEPQIIALSATLKDPKSFTKTLFERDFEVISKAYNPSPKKYF--LVFYSENIDE 253

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER-FNSLHEHFTSSIAIIHGRMSDID 529
             + L  +LS     Y I   I+     + R   E     L       I    G  +  D
Sbjct: 254 K-DLLGKILS-----YLISKNIKTLTFFDSRRKTEEILKFLLSRGLKKIITYRGTFTHED 307

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR--GE 587
           +  +   FK G   +L+ T  +E+GID+ D   +I       G+  L Q  GR GR   E
Sbjct: 308 RREIERKFKEGEYLVLLTTNALELGIDIGDVDTVINYGIPSTGIFSLIQRFGRAGRRDRE 367

Query: 588 EISSCIL 594
            I++ IL
Sbjct: 368 AINAIIL 374


>gi|153809826|ref|ZP_01962494.1| hypothetical protein RUMOBE_00207 [Ruminococcus obeum ATCC 29174]
 gi|149834004|gb|EDM89084.1| hypothetical protein RUMOBE_00207 [Ruminococcus obeum ATCC 29174]
          Length = 739

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 90/201 (44%), Gaps = 18/201 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++QE+A+  I ++  Q+     ++ G  GSGKT + +  +   V  G Q +++ P   L
Sbjct: 208 TETQEAALLQIQEEWKQETPRPVLIHGVTGSGKTQIYMKLIQQTVNEGKQVIVLIPEIAL 267

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
               Y+ ++++       V ++   + Q  R    +R   G+  I++G   ALF     +
Sbjct: 268 T---YQTVRRFYGWFGDKVSVLNSRLSQGERYDQFKRAKRGEIQIMVGPRSALF---TPF 321

Query: 393 YKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            +L L+I+DE+H          R+  ++  +   +     +++ +ATP          G+
Sbjct: 322 SRLGLIIIDEEHEQTYKSENSPRYHARETAEYRAQMENARLVMGSATPSLEAYTKAKDGE 381

Query: 443 IDISKITEKPAGRKPIKTVII 463
             + K+  +   R P+  V +
Sbjct: 382 YRLVKLEARYEDR-PLPEVTV 401


>gi|15616188|ref|NP_244493.1| late competence protein [Bacillus halodurans C-125]
 gi|10176250|dbj|BAB07345.1| late competence protein [Bacillus halodurans C-125]
          Length = 441

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 144/330 (43%), Gaps = 51/330 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +  Q  A    +Q   QK     I+    GSGKT +   A+A ++  G + ++  P + +
Sbjct: 112 SHGQRHASLQAVQYWKQKED--HIIWAVCGSGKTEIVFDAVAQSLANGERILLATPRVDV 169

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           + + +  F + +     I +  + G+ P          + H    +I  TH  F+    +
Sbjct: 170 VKELYPRFKQAFPS---ITITALYGDSPS---------VFHPAQLVIATTHQTFRFKKAF 217

Query: 393 YKLILVIVDE--QHRFGVQQRLKLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
                VIVDE     F   Q L+L+    ++  AP +L ++ATP  R+L+     +  I+
Sbjct: 218 ---DFVIVDEVDAFPFSCDQSLQLSVNEARRPLAP-ILYLSATP-SRSLLEQ---NKRIT 269

Query: 447 KITEKPAGRK-PIKTVIIPINRIDEVIER---LKVVL----SEGKKAYWICPQIEEKKES 498
           K++ +  G   P+ + +   N    V+ R    K+V        K  +   P I   ++ 
Sbjct: 270 KVSTRYHGHPLPLPSFVWIGNWRKTVMRRKLPSKLVTWLEKHHRKPVFLFVPSIPVLEQV 329

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           +  + +++   +H+        +H    D  +   +  F++G  KLL+ TT++E G+ V 
Sbjct: 330 S--AALKQLGYIHD-------AVHA--EDPHRHEKVTRFRDGVTKLLVTTTILERGVTVP 378

Query: 559 DASIIIIENAEH--FGLAQLHQLRGRVGRG 586
              + ++  AEH  F  A L Q+ GRVGR 
Sbjct: 379 RVQVAVL-GAEHSVFSEAALVQISGRVGRS 407


>gi|86132787|ref|ZP_01051379.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85816741|gb|EAQ37927.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 454

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L E F   + +IH   +   + + +++F  G  ++++AT V+  G+D+ D + +I  N  
Sbjct: 264 LEEAFPGQVDLIHSNKTQNYRINSINAFSEGKVRMMVATDVMARGLDIDDITHVINVNTP 323

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            F    LH++ GR GR ++  + I+L  P
Sbjct: 324 RFPENYLHRI-GRTGRAQKEGTSIVLSTP 351


>gi|328915095|gb|AEB55928.1| helicase, Snf2 family [Chlamydophila psittaci 6BC]
          Length = 1130

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 19/157 (12%)

Query: 297 ILQGDVGSGKTLVALIAMA-AAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL A+IA+  + +E G G ++I+ P  ++     EF +K+  N +    I
Sbjct: 688 ILADDMGLGKTLQAIIAITQSKLEKGKGCSLIVCPTSLVYNWKEEF-RKF--NPEFKTVI 744

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL---VIVDEQHRFGVQQR 411
           I G +P ++RR+ L  ++     + I ++ L Q  I  YK  +   V++DE H   ++ R
Sbjct: 745 IDG-VP-SYRRRQLANLS--DYDVAITSYNLLQKDIDVYKDFVFDYVVLDEAHH--IKNR 798

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL-VLTSLGDI 443
                K+     + H L++T TPI  +L  L SL D 
Sbjct: 799 TTRNAKSVKMIRSGHRLILTGTPIENSLEELWSLFDF 835


>gi|302654809|ref|XP_003019203.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517]
 gi|291182911|gb|EFE38558.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517]
          Length = 403

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 144/354 (40%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 51  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVLRESQALVLS 104

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + LE   HGQ H++ GT     D
Sbjct: 105 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLE---HGQ-HVVSGTPGRVAD 160

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT     L +T
Sbjct: 161 MIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMT 220

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +       K    P              RI  +++R ++ L EG K Y+I     EK+E 
Sbjct: 221 T-------KFMTDPV-------------RI--LVKRDELTL-EGLKQYFIAV---EKEEW 254

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 255 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 312

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 313 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 361


>gi|168185001|ref|ZP_02619665.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|237795441|ref|YP_002862993.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum Ba4 str. 657]
 gi|182671947|gb|EDT83908.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|229262402|gb|ACQ53435.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
          Length = 376

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 142/326 (43%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I +   G+GKTL  L+ M   +       Q +I+ P   LA Q  E   K  +   + + 
Sbjct: 43  IAEAQTGTGKTLAFLLPMFENISPDIDAIQGLIITPTRELAIQITEEAMKLKEAKDLNIL 102

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRFGV 408
              G      + K L+       H++I T       L ++++ +  L  +++DE      
Sbjct: 103 AAYGGKDIGSQIKKLK----NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDE-----A 153

Query: 409 QQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
            + L +  K     ++    TP  R TL  ++  + ++ K+  K   R P K +II    
Sbjct: 154 DEMLLMGFKNDVRSII--ENTPRKRQTLCFSATMNSEVKKLAYKNM-RDP-KLIIIEKEE 209

Query: 468 IDEVIERLKVVL---SEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS--- 516
           +   ++ +K VL   ++ +K   +C  ++E  E+ F +++      R ++L E       
Sbjct: 210 V--TLKNIKQVLIETTDRRKQEDLCKILDE--ENPFMAIIFCRTKRRVDTLEEALYKKGY 265

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFG 572
           +   +HG ++   +E +M SFKN   + LIAT V   G+D+   + +    I ENAE + 
Sbjct: 266 NCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARGLDITGVTHVFNYDIPENAESY- 324

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
              +H++ GR GR  E     L   P
Sbjct: 325 ---IHRI-GRTGRAGEKGYTFLFVAP 346


>gi|56785884|gb|AAW29074.1| DEAD box helicase Vasa2 [Nematostella vectensis]
          Length = 281

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 113/259 (43%), Gaps = 30/259 (11%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+ +AP   LA Q Y   +K+   T +   +  G +  +H+ + L+       ++++GT
Sbjct: 27  QAMCIAPTRELANQIYLEARKFAHGTMLRPVVCYGGVSVSHQLRQLQ----SGCNLLVGT 82

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLK-LTQKATAP-----HVLLMTA 428
                D I+  K+ L     +I+DE  R    G +  ++ + +    P       L+ +A
Sbjct: 83  PGRLTDFIEKGKVSLKGLQFLILDEADRMLDMGFEPAIRRIVESMGMPDKSERQTLMFSA 142

Query: 429 T---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           T    I R L    L D     +         I+  +I +   +E  +RL  +L +    
Sbjct: 143 TFPEEIQR-LAGDFLNDYLFLTVGRVGGTTSDIEQTVIEVTD-NEKRDRLTQILGDAGTD 200

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             +   +E K+ ++F ++   F S     T+SI   HG     ++E  +D F+ G C +L
Sbjct: 201 RTLV-FVESKRSADFLAI---FLSGEGFPTTSI---HGDRLQQEREEALDDFRKGRCPVL 253

Query: 546 IATTVIEVGIDVVDASIII 564
           IAT V   G+D+ D   +I
Sbjct: 254 IATNVAARGLDIDDVKHVI 272


>gi|308183171|ref|YP_003927298.1| primosome assembly protein PriA [Helicobacter pylori PeCan4]
 gi|308065356|gb|ADO07248.1| primosome assembly protein PriA [Helicobacter pylori PeCan4]
          Length = 619

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 72/136 (52%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q  A+K++     QK+    +L GD GSGKT + + ++A  +E    A+++ P I +
Sbjct: 112 SQTQTDALKEL-----QKHSA-SLLFGDTGSGKTEIYMHSIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      K + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKKAFKEN----LGLWHSKLSQTQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 219 LKELGLIIVDEEHDFS 234


>gi|269956525|ref|YP_003326314.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305206|gb|ACZ30756.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 712

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/400 (21%), Positives = 161/400 (40%), Gaps = 80/400 (20%)

Query: 251 IGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           +G+P  +E  +A     ++ F+ P+  Q  AI  +L        +  + Q   G+GKT  
Sbjct: 54  LGLPATLEAAVA-----DLGFTTPSAIQAQAIPALLGGRD----ITGVAQ--TGTGKTAA 102

Query: 310 ALIAMAAAVEAGG------QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQA 362
             + + A+VEA        QA+++ P   LA Q  E I+ +  +   + V  + G  P  
Sbjct: 103 FGLPLLASVEAHRGTRPTVQALVLTPTRELAMQVAEAIESFASHLPDVRVLSVYGGSPYV 162

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH---RFGVQQRLK- 413
            +++AL        H+++GT     D ++   L+L     +++DE     R G  + ++ 
Sbjct: 163 PQQRAL----RDGVHVVVGTPGRVIDHLERGGLVLDDARFLVLDEADEMLRMGFAEDVEK 218

Query: 414 -LTQKATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
             +   T   V L +AT  P  R +  T L D              P++  +        
Sbjct: 219 IFSYAPTQRQVALFSATMPPAIRAIADTHLND--------------PVEIAVA------- 257

Query: 471 VIERLKVVLSEGKKAYWICP---------QIEEKKESNFRSVVERFNSLHEHFTS----- 516
              R    ++   + Y I P         +I    +++   V  R  S  E   +     
Sbjct: 258 ---RQSSTVASVHQGYAIVPFRHKVGALTRILATSDADASIVFTRTRSAAEEVGAALIEK 314

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             S A I G ++  ++E +++  ++G   +L+AT V   G+DV    +++  +      A
Sbjct: 315 GISAATISGDVAQKEREKIVERLRSGALDVLVATDVAARGLDVDRIGLVVNFDIPREAEA 374

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
            +H++ GR GR       +    P    +   +L  ++NT
Sbjct: 375 YVHRI-GRTGRAGRTGRAVSFVTP----HERGKLKFIENT 409


>gi|269302635|gb|ACZ32735.1| SNF2/helicase domain protein [Chlamydophila pneumoniae LPCoLN]
          Length = 1166

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 19/157 (12%)

Query: 297 ILQGDVGSGKTLVALIAMA-AAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL A+IA+  + +E G G ++I+ P  ++     EF +K+  N +    +
Sbjct: 724 ILADDMGLGKTLQAIIAVTQSKLEKGSGCSLIVCPTSLVYNWKEEF-RKF--NPEFRTLV 780

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK---LILVIVDEQHRFGVQQR 411
           I G +P + RRK L  +A     + I ++ L Q  ++ YK      V++DE H   ++ R
Sbjct: 781 IDG-VP-SQRRKQLTALA--DHDVAITSYNLLQKDVELYKSFRFDYVVLDEAHH--IKNR 834

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL-VLTSLGDI 443
                K+     + H L++T TPI  +L  L SL D 
Sbjct: 835 TTRNAKSVKMIQSDHRLILTGTPIENSLEELWSLFDF 871


>gi|156043047|ref|XP_001588080.1| hypothetical protein SS1G_10526 [Sclerotinia sclerotiorum 1980]
 gi|154694914|gb|EDN94652.1| hypothetical protein SS1G_10526 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 548

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 133/335 (39%), Gaps = 59/335 (17%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKT+   +     + +        G +AV+++P   LA Q YE I K  + + + 
Sbjct: 223 AETGSGKTMAFAVPCVRYMSSLPKNQKNKGPRAVVVSPTRELAMQSYEQIVKLAKASGLE 282

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR- 405
              + G +P+  + +AL+      A I++ T     D I        K   V++DE  R 
Sbjct: 283 CVCVYGGVPKDEQIRALK-----TADIVVATPGRLNDLINQGCADLSKARYVVLDEADRM 337

Query: 406 ------------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI-- 445
                              G +Q L  T  AT P  +   A+    + V  ++GD     
Sbjct: 338 LDKGFEEEIRKIINTTPSLGKRQTLMFT--ATWPESVRELASTFMTSPVKIAIGDNPTGD 395

Query: 446 ----SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
               S+I +K         V+ P ++   +++ LK   S  +K   I      KKE+   
Sbjct: 396 LRANSRIVQK-------VEVVEPRDKEYRLMQLLKQYQSGSQKDDRILVFCLYKKEAT-- 446

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
               R           +A IHG +S   +   +++FK+G   +L+AT V   G+D+    
Sbjct: 447 ----RVEGFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVK 502

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           ++I           +H++ GR GR  +    I L+
Sbjct: 503 LVINCTFPLTVEDYVHRI-GRTGRAGKDGLAITLF 536


>gi|71904068|ref|YP_280870.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71803163|gb|AAX72516.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
          Length = 447

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 132/314 (42%), Gaps = 29/314 (9%)

Query: 302 VGSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +       +A  Q VI AP   LA Q ++  K+  ++ Q   EI   N
Sbjct: 47  TGSGKTHTFLLPIFEKLDEAKAEVQVVITAPSRELATQIFDACKQIAKHFQ--EEIRLAN 104

Query: 359 -MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRL 412
            +    + + +E++   Q HI+IGT     D ++      +K    +VDE         L
Sbjct: 105 YVGGTDKLRQIEKLKGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFL 164

Query: 413 KLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               K  A       +L+ +AT IP+ L         + K    P   + IKT  +  + 
Sbjct: 165 DTVDKIAASLPKSVQILVFSAT-IPQKLQPF------LKKYLTNPVIEQ-IKTKTVIADT 216

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGR 524
           ID  +   K     G+    I   ++      F +  ER + LH   T++   +A IHG 
Sbjct: 217 IDNWLVSTKGRDKNGQ-LLEILKTMQPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGG 275

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +   +++ +M+  K    + ++AT +   GID+   S +I +         +H++ GR G
Sbjct: 276 IPPRERKRIMNQVKKLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTG 334

Query: 585 RGEEISSCILLYHP 598
           R     + I LY P
Sbjct: 335 RNGMAGTAITLYQP 348


>gi|327292761|ref|XP_003231078.1| ATP-dependent RNA helicase eIF4A [Trichophyton rubrum CBS 118892]
 gi|326466708|gb|EGD92161.1| ATP-dependent RNA helicase eIF4A [Trichophyton rubrum CBS 118892]
          Length = 396

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 122/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    V+      QA+I+AP   LAQQ  + +        +   
Sbjct: 64  IAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMNVDCH 123

Query: 354 IITGNMPQAHRRKALERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
              G        KAL+          G+ H +I    L  D I+ +  +L   DE    G
Sbjct: 124 ACIGGTNVREDMKALQDGPQVVVGTPGRVHDMIQRRVLKTDHIKMF--VLDEADEMLSRG 181

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             +++    +   ++T   V+L++AT  P           D+ ++T K   R P++   I
Sbjct: 182 FTEQIYDIFQFLPQST--QVVLLSATMPP-----------DVLEVTTKFM-RDPVR---I 224

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      +K  W    + +  E+          N R  V+      + 
Sbjct: 225 LVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLQA 284

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 285 RDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335


>gi|229176129|ref|ZP_04303622.1| ATP-dependent RNA helicase dbpA [Bacillus cereus MM3]
 gi|228607364|gb|EEK64693.1| ATP-dependent RNA helicase dbpA [Bacillus cereus MM3]
          Length = 481

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 32/319 (10%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI-SKITEKPAG--RKPIKT 460
             F  Q    + +  T    +L +AT +P  +   S   ++  + I  K AG     I+ 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPEDVEKLSRTYMNAPTHIEIKAAGITTDKIEH 219

Query: 461 VIIPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            +  + R +E +  LK V + E   +  I  + +E  +  +R + +R N   +       
Sbjct: 220 TLFEV-REEEKLSLLKDVTMIENPDSCIIFCRTQENVDHVYRQL-KRVNYPCDK------ 271

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      + +H+ 
Sbjct: 272 -IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRT 330

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       I    P
Sbjct: 331 -GRTGRAGNNGKAITFITP 348


>gi|251764758|sp|B7ZTW1|IF4A3_XENTR RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|213624377|gb|AAI71014.1| hypothetical protein LOC100135173 [Xenopus (Silurana) tropicalis]
          Length = 415

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 144/340 (42%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    +++   ++      QA+I+AP
Sbjct: 65  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAP 118

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +      G     +  + + ++ +GQ H++ GT     D 
Sbjct: 119 TRELAGQIQKVLLALGDYMNVQCHACIGG---TNVGEDIRKLDYGQ-HVVAGTPGRVFDM 174

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++    +   P   V L++AT     L +T+
Sbjct: 175 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTN 234

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGKKA 485
               D  +I  K      + IK   + + R +   + L             +  +  +K 
Sbjct: 235 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 294

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  ++L
Sbjct: 295 DWL---TEKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGASRVL 335

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 336 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 374


>gi|166157858|ref|NP_001107349.1| eukaryotic initiation factor 4A-III [Xenopus (Silurana) tropicalis]
 gi|163916017|gb|AAI57178.1| LOC100135173 protein [Xenopus (Silurana) tropicalis]
          Length = 415

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 144/340 (42%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    +++   ++      QA+I+AP
Sbjct: 65  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAP 118

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +      G     +  + + ++ +GQ H++ GT     D 
Sbjct: 119 TRELAGQIQKVLLALGDYMNVQCHACIGG---TNVGEDIRKLDYGQ-HVVAGTPGRVFDM 174

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++    +   P   V L++AT     L +T+
Sbjct: 175 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTN 234

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGKKA 485
               D  +I  K      + IK   + + R +   + L             +  +  +K 
Sbjct: 235 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 294

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  ++L
Sbjct: 295 DWL---TEKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGASRVL 335

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 336 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 374


>gi|303319503|ref|XP_003069751.1| Eukaryotic translation initiation factor, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|142985565|sp|Q1DTB3|FAL1_COCIM RecName: Full=ATP-dependent RNA helicase FAL1
 gi|240109437|gb|EER27606.1| Eukaryotic translation initiation factor, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320040787|gb|EFW22720.1| ATP-dependent RNA helicase FAL1 [Coccidioides posadasii str.
           Silveira]
          Length = 399

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 147/352 (41%), Gaps = 79/352 (22%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAIQSRAIVQICKGRDT------IAQAQSGTGKTATFAISILQVIDTALRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G          + ++ HGQ H++ GT     D
Sbjct: 101 PTRELATQIQNVIMAVGDYMNVQCHACIGGTNVG---DDIRKLDHGQ-HVVSGTPGRVAD 156

Query: 389 SIQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L      ++++DE       G ++++    +   P      AT +   +VL++ 
Sbjct: 157 MIRRRHLRTRHIKMLVLDEADDLLARGFREQIYDVYRYLPP------ATQV---VVLSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
              D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E  F
Sbjct: 208 LPYDVLSMTTKFMT-DPVRILV----------KRDELTL-EGLKQYFIAV---EKEEWKF 252

Query: 501 RSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMDSF 537
            ++ + +++L                         +FT  ++ +HG M   +++S+M  F
Sbjct: 253 DTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQDF 310

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
           + G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 311 RQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 357


>gi|18977012|ref|NP_578369.1| ATP-dependent RNA helicase, putative [Pyrococcus furiosus DSM 3638]
 gi|18892643|gb|AAL80764.1| ATP-dependent RNA helicase, putative [Pyrococcus furiosus DSM 3638]
          Length = 658

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 50/241 (20%)

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A  Q+ +I     ++QD   Y   +L +V           + + ++A  P +++M+AT I
Sbjct: 155 AIAQSLVIFDEVQMYQDESMYMPRLLSLV-----------VGILEEANVP-LVIMSAT-I 201

Query: 432 PRTLVLTSLGD---IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           P  L     GD   I + K  +    R  +K  ++    I +V+  +K +L  GKK   +
Sbjct: 202 PSKLREMIAGDTEVITVDKNDKNKPSRGNVKVRLVE-GDITDVLNDIKKILKNGKKVLVV 260

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIA------IIHGRMSDID---KESVMDSFKN 539
                    +  R  VE +  L +    ++A      +IH R +  D   KE  +DS   
Sbjct: 261 --------RNTVRKAVETYQVLKKKLNDTLANPSDALLIHSRFTIGDRREKERALDS--- 309

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-----GEEISSCIL 594
              +L++AT V+E G+D+ +  +++ +      +A L  L  R+GR     GEE    IL
Sbjct: 310 --ARLIVATQVVEAGLDLPNVGLVVTD------IAPLDALIQRIGRCARRPGEEGEGIIL 361

Query: 595 L 595
           +
Sbjct: 362 I 362


>gi|107102999|ref|ZP_01366917.1| hypothetical protein PaerPA_01004068 [Pseudomonas aeruginosa PACS2]
 gi|296388016|ref|ZP_06877491.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 441

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 151/368 (41%), Gaps = 65/368 (17%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG- 321
           K L ++ FS PT  Q +AI   L+        LR+     GSGKT   L+ +   + A  
Sbjct: 13  KALESLSFSEPTPVQAAAIPKALEGHD-----LRV-TAQTGSGKTAAFLLPLLHRLLAED 66

Query: 322 -----GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN----MPQAHRRKALERIA 372
                 +A+I+ P   LAQQ  + ++++ Q T I   +ITG     +  A  RK  E   
Sbjct: 67  KPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKNPE--- 123

Query: 373 HGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVL-LM 426
                IIIGT     +      L L     +++DE  R        +     A  VL L 
Sbjct: 124 -----IIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADR--------MLDMGFADDVLALA 170

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAG-RKPIKTV-----IIPINRIDEVIERLKV-VL 479
            A P  R  +L S         T   AG  K I  V     ++ +N++ E+ E ++  V+
Sbjct: 171 NACPAERQTLLFS--------ATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVI 222

Query: 480 SEGKKAY------WICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           +    A+      W+       K    +N R   +R           + ++HG     D+
Sbjct: 223 TADDVAHKEQLLQWLLSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDR 282

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEI 589
           +  ++  K G  K+L+AT V   G+DV    ++I  +    G   +H++ GR GR G E 
Sbjct: 283 KLAIERLKQGAVKILVATDVAARGLDVEGLDLVINFDMPRSGDEYVHRI-GRTGRAGAEG 341

Query: 590 SSCILLYH 597
            +  L+ H
Sbjct: 342 LAISLICH 349


>gi|134114846|ref|XP_773721.1| hypothetical protein CNBH1760 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256349|gb|EAL19074.1| hypothetical protein CNBH1760 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 546

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 155/372 (41%), Gaps = 66/372 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+K QE A+  +L   S   R L I Q   G+GKT    + M + V+      QA+ +AP
Sbjct: 171 PSKIQEKALPLLL---SNPPRNL-IGQSQSGTGKTAAFTLNMLSRVDPTIPTPQAICIAP 226

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E + +  Q TQ+   +    +P +  R +  RI      I+IGT     D 
Sbjct: 227 SRELARQIQEVVDQIGQFTQVGTFLA---IPGSWSRNS--RI---DKQILIGTPGTLVDM 278

Query: 390 IQYYKLIL-------VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           +     IL       +++DE      QQ L   Q      +L     P  + ++ ++  +
Sbjct: 279 LMRGSRILDPRMIRVLVLDEADELIAQQGLG-EQTFRIKQLL----PPNVQNVLFSATFN 333

Query: 443 IDISKITEK--PAGRK-----------PIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            D+ +  ++  P   K            I+ + +  +  D+  E L         A + C
Sbjct: 334 DDVQEFADRFAPEANKIFLRKEDITVDAIRQLYLECDSEDQKYEALS--------ALYDC 385

Query: 490 PQIEE-----KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             I +     K++     + ER  S   H   ++A +HG     ++++++D F+NG  K+
Sbjct: 386 LVIGQSIVFCKRKVTADHIAERLIS-EGH---AVASLHGDKLSQERDAILDGFRNGETKV 441

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQ--------LHQLRGRVGRGEEISSCILLY 596
           LI T VI  GID+   ++++  +    G           +H++ GR GR       ++  
Sbjct: 442 LITTNVIARGIDIPAVNMVVNYDVPDLGPGGNGPDIETYIHRI-GRTGRFGRKGCSVIFT 500

Query: 597 HPPLSKNSYTRL 608
           H   SK+   R+
Sbjct: 501 HDYRSKSDVERI 512


>gi|71022799|ref|XP_761629.1| hypothetical protein UM05482.1 [Ustilago maydis 521]
 gi|74699660|sp|Q4P331|IF4A_USTMA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|46101182|gb|EAK86415.1| hypothetical protein UM05482.1 [Ustilago maydis 521]
          Length = 411

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 123/293 (41%), Gaps = 46/293 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LAQQ  + +       +I   
Sbjct: 79  IAQAQSGTGKTATFSIAILQRIDPSIKAVQALILAPTRELAQQIQKVVIALGDYMKIDCH 138

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
              G     + R+ + ++  G A +++GT     D I        Q     L   DE   
Sbjct: 139 ACIGG---TNVREDMAKLNEG-AQVVVGTPGRVYDMINRRAFKTDQLKMFCLDEADEMLS 194

Query: 406 FGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G + ++    +L  + T    +L++AT     L +T            K   R PI+  
Sbjct: 195 RGFKDQMYEVFQLLPQDT--QCVLLSATMPQEVLEVT------------KKFMRDPIR-- 238

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYW----ICPQIEEKKESN---FRSVVERFNSLHEHF 514
            I + R +  +E +K      +K  W    +C   E    +    F +   + + L +  
Sbjct: 239 -ILVKRDELTLEGIKQFYVAVEKEDWKLDTLCDLYETVTITQAVIFCNTRRKVDWLTDKL 297

Query: 515 TS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           TS   +++ +HG M    +E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 298 TSREFTVSAMHGDMEQAQREVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 350


>gi|324517616|gb|ADY46875.1| Eukaryotic initiation factor 4A-III [Ascaris suum]
          Length = 405

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 145/340 (42%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   +       QA+I++P
Sbjct: 55  PSAIQQRAIKQII-----KGRDV-IAQAQSGTGKTATFSISVLQGLNTTIRETQALILSP 108

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I        +      G        + + ++ +GQ H++ GT     D 
Sbjct: 109 TRELASQIQKVILALGDYMNVQCHACIGGTNVG---EDIRKLDYGQ-HVVSGTPGRVFDM 164

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G +++L    +   P   V+L++AT     L +TS
Sbjct: 165 IRRRNLRTRSIRMLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTS 224

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEGKKA 485
               +  +I  K      + IK   + ++R +              I +  +  +  +K 
Sbjct: 225 KFMTNPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLCDLYDTLTITQAVIFCNTRRKV 284

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ KE+NF                +++ +HG M   ++++++  F++GT +LL
Sbjct: 285 DWLA---EKLKEANF----------------TVSAMHGDMEQKERDAIVKEFRSGTSRLL 325

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I+T V   G+D+   S+++  +  +     +H++ GR GR
Sbjct: 326 ISTDVFARGLDIPQVSLVVNYDLPNNRELYIHRI-GRSGR 364


>gi|291519352|emb|CBK74573.1| hypothetical protein CIY_18410 [Butyrivibrio fibrisolvens 16/4]
          Length = 222

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 21/233 (9%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE-ISEE 67
           + + + T +GVG+K +  L+K+            D+L + P +++  +  P I +  S  
Sbjct: 3   MLSNIDTIKGVGEKTTKLLNKL------GVYTIEDILLFFPRTYL-VYPEPSIPDKDSVN 55

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            +++I+G I         + R   + +    G+I +   +  +  +KN    G+     G
Sbjct: 56  SLISISGRIKASPKTFRTRNRMDILSVTAYAGDIPVDLVWFNSNYIKNSMEPGKVYIFYG 115

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-- 184
           ++   K R  +  P  IF   + +     I+ +Y L  GLS     K + EAL+   +  
Sbjct: 116 RLVFDKGRFKISQPA-IFEPEKYLEIQKQIQPIYPLTKGLSNTTILKAVKEALNNCCIPD 174

Query: 185 --LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
             LPE++E    QK  F S ++A    H P     F+    AR+RLAY+E+ +
Sbjct: 175 NRLPEYLE----QKNGFMSYSDAIRTYHFP---DSFDSLVAARKRLAYEEMFS 220


>gi|323343014|ref|ZP_08083245.1| ATP-dependent RNA helicase DbpA [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463078|gb|EFY08273.1| ATP-dependent RNA helicase DbpA [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 487

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 144/368 (39%), Gaps = 60/368 (16%)

Query: 261 IAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           I   IL++I +    +PT  Q+  I  +L   S KN    ++Q   GSGKT    I +  
Sbjct: 10  IDDSILKSIQYLGYEAPTDVQQEVIPAVL---SGKNI---VVQSQTGSGKTASFGIPICH 63

Query: 317 AVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP---QAHRRKALER 370
            VE      Q +++AP   LA Q  E +    +  ++ VE + G      QA R K +  
Sbjct: 64  QVEWKKRKPQVLVLAPTRELAIQIQEDLFNLGRFKRLKVEALFGRSSFEKQAQRLKEM-- 121

Query: 371 IAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATA 420
                 HI++ T     D +            L++   DE    G   ++   + +    
Sbjct: 122 -----THILVATPGRLLDHMARETVDLSHIETLVIDEADEMFNMGFIDQITSIINRIPKK 176

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI-DEVIERLKVVL 479
              LL +AT   R   L +L              + P    I   +R+ D + ER  +V 
Sbjct: 177 SQKLLFSATMPERVKDLCTL------------YIKNPQWIDIETESRVEDRIDERYYIVD 224

Query: 480 SEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
              K A      I E  +S     N +  VE   +  E     +  +HG M    +  V+
Sbjct: 225 YPDKMALLESVLITENPDSSIIFCNTKEQVESVTNFMEDLGCKVDTLHGGMEQRFRTKVL 284

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGRGEEIS 590
             FK+G  + L+AT V   G+D+ D S+++     EN E +     H++ GR  R ++  
Sbjct: 285 ADFKHGLFRYLVATDVAARGLDIDDVSLVVNFDVPENTESY----THRV-GRTARVDKYG 339

Query: 591 SCILLYHP 598
             +    P
Sbjct: 340 KAVTFASP 347


>gi|170040294|ref|XP_001847939.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167863866|gb|EDS27249.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 818

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 152/372 (40%), Gaps = 68/372 (18%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------------AAAVE 319
            PT  Q  AI   LQ     NR + I   + GSGKTL  LI +                +
Sbjct: 412 EPTPIQRQAIPIGLQ-----NRDI-IGIAETGSGKTLAFLIPLLNWIQGLPKIERQETAD 465

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G  A+I+AP   LAQQ  E  +K+ Q   I   ++ G +    R +   R+  G   I+
Sbjct: 466 QGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGL---SREEQGFRLRLG-CEIV 521

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKL---------TQKA 418
           I T     D ++   L+L     +++DE  R         VQ+ L+          T++A
Sbjct: 522 IATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEA 581

Query: 419 TAPHVLL---MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                L+    T     +T++ T+     + ++  +   R+P    I  + +  E  E++
Sbjct: 582 EDATKLMENFNTKKKYRQTVMFTATMPPAVERLA-RTYLRRPATVYIGSVGKPTERTEQI 640

Query: 476 KVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             +++E +K   +   +    E       N +   +      E    +   +HG      
Sbjct: 641 VHIVTENEKRKKLMEILSRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 700

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVG 584
           +E  + S KNG+  +L+AT V   GID+ D S++I     ++ +A+      H++ GR G
Sbjct: 701 REYALASLKNGSKDILVATDVAGRGIDIKDVSLVI-----NYDMAKTIEDYTHRI-GRTG 754

Query: 585 R----GEEISSC 592
           R    G  IS C
Sbjct: 755 RAGKTGCAISFC 766


>gi|224128550|ref|XP_002329031.1| predicted protein [Populus trichocarpa]
 gi|118482674|gb|ABK93256.1| unknown [Populus trichocarpa]
 gi|222839702|gb|EEE78025.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 124/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L QD I+ +  +L   DE 
Sbjct: 141 ACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLRRQSLRQDYIKMF--VLDEADEM 194

Query: 404 HRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++        +   V + +AT  P  L +T        K   KP        V
Sbjct: 195 LSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR-------KFMNKP--------V 239

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K       K  W    + +  E+          N R  V+      
Sbjct: 240 RILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 299

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 300 RGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 359

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 360 PENYLHRI-GRSGR 372


>gi|40891625|gb|AAR37337.1| vasa-like protein [Crassostrea gigas]
          Length = 758

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 137/329 (41%), Gaps = 53/329 (16%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+ +   +   G            QA+++AP   LA Q +   +K+   T 
Sbjct: 356 TGSGKTAAFLLPVLTGMMKNGISGSSFSEVQEPQALVVAPTRELAVQIFMDARKFAHGTM 415

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQH 404
           +   ++ G     ++ + +E+      HI++GT     D      I   KL  +I+DE  
Sbjct: 416 LRAVVLYGGTSVGYQLRQVEQ----GTHILVGTPGRLIDIIGKGKISLSKLKYLILDEAD 471

Query: 405 R-----FGVQQRLKLTQKATAPHV---LLMTATPIP---RTLVLTSLGDIDISKITEKPA 453
           R     FG   R  + +  T P      LM +   P   + +    L D     +     
Sbjct: 472 RMLDMGFGPDIRKLVEELGTPPKTERQTLMFSATFPEEIQKMAGDFLNDYLFLTVGRVGG 531

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
               +   +  ++R  E   RL  +L+E G +   +   +E+K+ ++F   +  + S + 
Sbjct: 532 ACTDVTQTVYEVDR-QEKRSRLCDILTETGSEKTLVF--VEQKRNADF---LASYLSQNG 585

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
             T+SI   HG     ++E  +  FK G   +LIAT+V   G+D     I ++++  ++ 
Sbjct: 586 FPTTSI---HGDRLQAEREEALRDFKLGKAPVLIATSVAARGLD-----IPLVKHVINYD 637

Query: 573 LAQ-----LHQLRGRVGRGEEISSCILLY 596
           L Q     +H++ GR GR   +   I  Y
Sbjct: 638 LPQSIDEYVHRI-GRTGRCGNLGKAISFY 665


>gi|332084176|gb|EGI89381.1| primosomal protein N' [Shigella boydii 5216-82]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|319947548|ref|ZP_08021778.1| primosome assembly protein PriA [Streptococcus australis ATCC
           700641]
 gi|319746236|gb|EFV98499.1| primosome assembly protein PriA [Streptococcus australis ATCC
           700641]
          Length = 796

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/415 (20%), Positives = 163/415 (39%), Gaps = 104/415 (25%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           QE A++ +   + Q ++   +L+G  GSGKT V L  +   ++ G  A+++ P I +  Q
Sbjct: 264 QERAVQAVTIKIGQPSKPF-LLEGVTGSGKTEVYLQIIQEVLDKGKTAIMLVPEISLTPQ 322

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
               FI ++       V I+   +    +     R+  G+A +++G  +     ++   L
Sbjct: 323 VTDRFISRFGDR----VAILHSGLSNGEKYDEWRRVERGEAQVVVGARSAIFAPLK--NL 376

Query: 396 ILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             +I+DE+H          R+  ++   L  +     ++L +ATP   T      G  + 
Sbjct: 377 GAIIIDEEHEATYKQDSNPRYHAREVALLRAQYHQAVLVLGSATPSLETRARAGKGVYEF 436

Query: 446 SKITEK--PAGRKPIKTVIIPINRI-------------DEVIERL----KVVLSEGKKAY 486
            ++T++  P  R P   VI   + I             + + ERL    +VVL   ++ Y
Sbjct: 437 LQLTQRANPLARIPEVEVIDFRDYIGQQESGTYTPKLLEAIAERLQRKEQVVLMLNRRGY 496

Query: 487 -------------------------------------------WICPQIEEKKESNFRSV 503
                                                       +CP  + +    + + 
Sbjct: 497 SSFVMCRECGQVDTCPNCDISLTLHMDTKTMDCHYCNYHKAIPTVCPNCQSRSIRYYGTG 556

Query: 504 VER-FNSLHEHFTSSIAIIHGRMSDIDK-------ESVMDSFKNGTCKLLIATTVIEVGI 555
            ++ ++ L E F  +  +   RM D+D        E+++D F  G   +L+ T +I  G+
Sbjct: 557 TQKAYDELQEIFPEARIL---RM-DVDTTRKKGSHEALLDQFGQGQADILLGTQMIAKGL 612

Query: 556 DVVDASIIIIENAE------HFGLAQ-----LHQLRGRVGRGE-EISSCILLYHP 598
           D  + +++ + NA+       F  ++     L Q+ GR GR + E    I  Y+P
Sbjct: 613 DFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVAGRAGRADKEGQVLIQTYNP 667


>gi|148665241|gb|EDK97657.1| eukaryotic translation initiation factor 4A2, isoform CRA_c [Mus
           musculus]
          Length = 367

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 79  IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 138

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 139 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 195

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK  T+  V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 196 RGFKDQIYEIFQKLNTSIQVVLLSAT-MP----------TDVLEVTKKFM-RDPIR---I 240

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 241 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHA 300

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 301 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351


>gi|114590952|ref|XP_001155612.1| PREDICTED: similar to initiation factor 4AII isoform 1 [Pan
           troglodytes]
          Length = 343

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 57  IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 116

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 117 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 173

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK  T+  V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 174 RGFKDQIYEIFQKLNTSIQVVLLSAT-MP----------TDVLEVTKKFM-RDPIR---I 218

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 219 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHA 278

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 279 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 329


>gi|54298236|ref|YP_124605.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
 gi|53752021|emb|CAH13447.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
          Length = 589

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 150/360 (41%), Gaps = 55/360 (15%)

Query: 279 SAIKDILQDMS-------QKNRMLRILQG-------DVGSGKTLVALIAMAAAVE---AG 321
           SA+   L+DM        Q   +  IL+G         G+GKT    + +   +    + 
Sbjct: 15  SALNKALEDMKFITPSPIQAQTIPLILEGRDAIALAQTGTGKTAAFALPILQNLSPEIST 74

Query: 322 GQAVIMAP---IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            QA+I+AP   + I   + +E + KY +N  + + ++ G      + K L       A +
Sbjct: 75  TQALILAPTRELAIQVAEQFELLSKYQRN--VTIAVLCGGQEYGRQLKQL----RSGAQV 128

Query: 379 IIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTA 428
           ++GT     D I    L        IL   DE  R G  + ++  L +      + L +A
Sbjct: 129 VVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMALFSA 188

Query: 429 TPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEG 482
           T +P   R +  T L D    +I  + A  K I+   +  +   + D +I  L+V   +G
Sbjct: 189 T-MPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVEDYQG 247

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +        + +S+   V E    L +H   ++AI HG ++   +E ++  FK G  
Sbjct: 248 VIVFV-------RTKSSTEEVAE---LLQQHGLRAMAI-HGDITQSLRERIIAQFKQGAI 296

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+DV   + +I  +  H     +H++ GR GR       IL   P  S+
Sbjct: 297 DILVATDVAARGLDVERVTHVINYDMPHDNETYVHRI-GRTGRAGRSGVTILFVTPKESR 355


>gi|241953571|ref|XP_002419507.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
 gi|223642847|emb|CAX43102.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
          Length = 667

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 120/301 (39%), Gaps = 53/301 (17%)

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++MAP   L  Q YE  KK++  + +   ++ G      + + ++R       +++ T  
Sbjct: 274 LVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDR----GCDLLVATPG 329

Query: 385 LFQD----------SIQYYKL--------------ILVIVDEQHRFGVQQRLKLTQKATA 420
             +D          +I+Y  L              I  IVDE     V+ R  L   AT 
Sbjct: 330 RLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVDECDMPAVKDRQTLMFSATF 389

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDIS--KITEK--PAGRKPIKTVIIPINRIDEVIERLK 476
           P  + M A    +  +  S+G +  +   IT+K         K+VI+ +   +E    L 
Sbjct: 390 PRDIQMLARDFLKDYIFLSVGRVGSTSENITQKILYVEDDEKKSVILDLLSANE--NGLT 447

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           +V +E K                 R      + L++    + A IHG  S  ++E  + +
Sbjct: 448 IVFTETK-----------------RMADNLADYLYDQGFPATA-IHGDRSQYEREKALAA 489

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKNG   +L+AT V   G+D+ + S +I  +        +H++ GR GR   +      +
Sbjct: 490 FKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRI-GRTGRAGNVGIATAFF 548

Query: 597 H 597
           +
Sbjct: 549 N 549


>gi|149184420|ref|ZP_01862738.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
 gi|148831740|gb|EDL50173.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
          Length = 359

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 137/336 (40%), Gaps = 45/336 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKTLVALIAMAAAVEAG------GQA 324
           PT  Q  AI  IL        M++ + G    G+GKT   ++ M   + +G       ++
Sbjct: 24  PTPIQAQAIPPIL--------MMKDIIGIAQTGTGKTASFVLPMIDVMASGRRRALMPRS 75

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+AP   LA Q  E  +KY +N  + + ++ G +    + KAL         ++I T  
Sbjct: 76  LILAPTRELAAQVAENFEKYGKNHDLKLALLIGGVQMGDQIKALNE----GVDVLIATPG 131

Query: 385 LFQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIP-- 432
              D  +  K++L     +++DE  R     F        ++       +L +AT  P  
Sbjct: 132 RLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICSKLPEQRQTMLFSATMPPPI 191

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
             L    L +    +++      K I    IP+    +  E L+ +L        I    
Sbjct: 192 EKLAKKFLDNPKRIEVSRAATTNKDITAFKIPVESRKKR-ETLRWLLRNDHVETAII--- 247

Query: 493 EEKKESNFRSVVERFN-SLHEH-FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                +N ++ V   N SL +H F SS   IHG M    +   +D FKNG   +L+A+ V
Sbjct: 248 ----FANRKTTVRELNKSLQQHGFASSE--IHGDMDQSSRIKELDRFKNGEVNILVASDV 301

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              G+DV   S +   +        +H++ GR GR 
Sbjct: 302 AARGLDVKGVSHVFNFDTPWHPDDYVHRI-GRTGRA 336


>gi|32475360|ref|NP_868354.1| primosomal protein N [Rhodopirellula baltica SH 1]
 gi|32445901|emb|CAD78632.1| primosomal protein N [Rhodopirellula baltica SH 1]
          Length = 811

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 21/209 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  QE+A+  I   +        +L G  GSGKT V + A+   V+  G A+++ P I +
Sbjct: 274 TAQQENALSRINSAVDSGRGRTLLLHGVTGSGKTEVYIQAIEHVVKQAGSAIVLVPEISL 333

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F  ++ QN    V ++   M  + R    +RI  G+  ++IG   A+F     
Sbjct: 334 TPQTRGRFEDRF-QN----VAVLHSQMSASERHFHWQRIRRGEVQVVIGPRSAVFA---P 385

Query: 392 YYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
              L L+++DE+H          R+  ++       A    ++L +ATP       T  G
Sbjct: 386 LPNLGLIVIDEEHDTSFKQDKQPRYHARKVAHARAMALGIPLVLGSATPSMEAWHATQTG 445

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDE 470
             ++  ++E+  G +P+  V +   R+ E
Sbjct: 446 HAELVTMSER-VGNRPMPDVQLVDLRVKE 473


>gi|269962799|ref|ZP_06177140.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
 gi|269832489|gb|EEZ86607.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
          Length = 447

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 149/367 (40%), Gaps = 67/367 (18%)

Query: 302 VGSGKTLVALIAM-------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  ++ M        +      +AVI+AP   LA+Q Y  ++           +
Sbjct: 51  TGSGKTLAFVLPMLHKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLGGLSYDAAL 110

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---F 406
           I G      + KAL R        I+ T     D +++  L L     +I+DE  R    
Sbjct: 111 ILGGENFNDQVKALRRYPK----FIVATPGRLADHLEHRSLFLDGLETLILDEADRMLDL 166

Query: 407 GVQQRLKLTQKATAPH----VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           G    L+   KA A H     L+ +AT     L    + DI  S++   P      K + 
Sbjct: 167 GFAPELRRIHKA-AKHRRRQTLMFSAT-----LDHAEVNDI-ASEMLNAP------KRIA 213

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--------ESNFRSVV---------E 505
           I ++      E  K +  +    +++C  ++ K+        E+ +R V+         E
Sbjct: 214 IGVSN-----EEHKDITQK----FYLCDHLDHKEAILERVLEEAEYRQVIIFTATRDDTE 264

Query: 506 RF-NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           R  N L+E    ++A+  G ++   + ++M  F+    K+L+ T V   G+D+   + +I
Sbjct: 265 RLTNKLNEKKLKAVAL-SGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIATVTHVI 323

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
             +        +H++ GR GR       + L  P    +S+ R+      +  F +  ED
Sbjct: 324 NFDMPKHTEEYVHRV-GRTGRAGNKGDAVSLVGPK-DWDSFKRVETYLQQDLNFSVF-ED 380

Query: 625 LKQRKEG 631
           LK + +G
Sbjct: 381 LKGKFKG 387


>gi|254172045|ref|ZP_04878721.1| DEAD/DEAH box helicase domain protein [Thermococcus sp. AM4]
 gi|214033941|gb|EEB74767.1| DEAD/DEAH box helicase domain protein [Thermococcus sp. AM4]
          Length = 720

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 129/334 (38%), Gaps = 59/334 (17%)

Query: 302 VGSGKTLVALIAMAAAV-EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
             SGKTLV+ I M   +   GG+AV + P+  LA++ Y   K++ +   + V   TG+  
Sbjct: 48  TASGKTLVSEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKEW-EKLGLKVAATTGDYD 106

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFGVQQR---- 411
                        G+  II+ T   F   +++       + LV+ DE H  G   R    
Sbjct: 107 STDD-------WLGRYDIIVATAEKFDSLLRHGARWIDDVKLVVADEVHLIGSYDRGATL 159

Query: 412 -LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA----GRKPIKTVIIPIN 466
            + LT       +L ++AT +     L    D  +     +P     G   + T+I    
Sbjct: 160 EMILTHMLGRAQILALSAT-VGNAEELAEWLDASLVVSDWRPVQLRRGVFHLGTLIWEDG 218

Query: 467 RID-----------EVIERLKVVL-------SEGKKAYWICPQIEEKKESNFRSVVERFN 508
           ++            + ++R K  L       S  K+A  I   +        +  +E   
Sbjct: 219 KVQSYPENWYSLVTDAVKRGKGALVFVNTRRSAEKEALAISKLVSSHLTKPEKRALESLA 278

Query: 509 S----------LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           S          L +     +A  H  +S +++  + D+F+ G  K++ AT  +  G+++ 
Sbjct: 279 SQLEDNPTSEKLKKALRGGVAFHHAGLSRVERTLIEDAFREGLIKVITATPTLSAGVNLP 338

Query: 559 DASIIIIENAEHFGLA-------QLHQLRGRVGR 585
              +II +   + G         ++ Q+ GR GR
Sbjct: 339 SFRVIIRDTKRYAGFGWTDIPVLEIQQMMGRAGR 372


>gi|213028846|ref|ZP_03343293.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 31

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/31 (70%), Positives = 24/31 (77%)

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +IIEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 1   MIIENPERLGLAQLHQLRGRVGRGAVASHCV 31


>gi|205373319|ref|ZP_03226123.1| primosome assembly protein PriA [Bacillus coahuilensis m4-4]
          Length = 719

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q  AI  ILQ +        +L G  GSGKT V L +++  +E G +A+++ P
Sbjct: 262 PFPLTNEQAKAIHPILQSIKDNRHEAFLLYGVTGSGKTEVYLQSISRVLEEGKEAIMLVP 321

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 322 EISLTPQMVTRFKSRFGNR----VAVLHSGLSAGEKYDEWRKIQRKEVSVVVGARSAIFA 377

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 378 P---FENLGIIIIDEEHETSYKQ 397


>gi|148379972|ref|YP_001254513.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153932857|ref|YP_001384271.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936987|ref|YP_001387810.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           Hall]
 gi|148289456|emb|CAL83553.1| putative ATP-dependent RNA helicase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928901|gb|ABS34401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932901|gb|ABS38400.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. Hall]
          Length = 376

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 142/326 (43%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I +   G+GKTL  L+ M   +       Q +I+ P   LA Q  E   K  +   + + 
Sbjct: 43  IAEAQTGTGKTLAFLLPMFENISPDIDAIQGLIITPTRELAIQITEEAMKLKEAKDLNIL 102

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRFGV 408
              G      + K L+       H++I T       L ++++ +  L  +++DE      
Sbjct: 103 AAYGGKDIGSQIKKLK----NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDE-----A 153

Query: 409 QQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
            + L +  K     ++    TP  R TL  ++  + ++ K+  K   R P K +II    
Sbjct: 154 DEMLLMGFKNDVRSII--ENTPRKRQTLCFSATMNSEVKKLAYKNM-RDP-KLIIIEKEE 209

Query: 468 IDEVIERLKVVL---SEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS--- 516
           +   ++ +K VL   ++ +K   +C  ++E  E+ F +++      R ++L E       
Sbjct: 210 V--TLKNIKQVLIETTDRRKQEDLCKILDE--ENPFMAIIFCRTKRRVDTLEEALYKKGY 265

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFG 572
           +   +HG ++   +E +M SFKN   + LIAT V   G+D+   + +    I ENAE + 
Sbjct: 266 NCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARGLDITGVTHVFNYDIPENAESY- 324

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
              +H++ GR GR  E     L   P
Sbjct: 325 ---IHRI-GRTGRAGEKGYTFLFVAP 346


>gi|114590936|ref|XP_001155860.1| PREDICTED: similar to initiation factor 4AII isoform 3 [Pan
           troglodytes]
          Length = 361

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 74  IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 133

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 134 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 190

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK  T+  V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 191 RGFKDQIYEIFQKLNTSIQVVLLSAT-MP----------TDVLEVTKKFM-RDPIR---I 235

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 236 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHA 295

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 296 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 346


>gi|90408477|ref|ZP_01216636.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
 gi|90310409|gb|EAS38535.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
          Length = 426

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 141/344 (40%), Gaps = 48/344 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------V 325
           P+  QE AI  IL   S K+ M        G+GKT    + + A +  G +A       +
Sbjct: 24  PSPIQEQAIPVIL---SGKDVMA---AAQTGTGKTAGFTLPLLANLMKGERAKANQVRVL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q +E +  Y QN  +   ++ G +    + + L R       +++ T   
Sbjct: 78  ILTPTRELAAQIHESVCNYGQNLPLRSAVVFGGVKINPQMQLLRR----GVDVLVATPGR 133

Query: 386 F-----QDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIPR-TLV 436
                 Q+++++ +L ++++DE  R    G    +K           ++   P  R  L+
Sbjct: 134 LLDLYQQNAVRFKQLEVLVLDEADRMLDMGFIHDIKR----------IIKFLPEKRQNLL 183

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    DI K+  K     P++  + P N   E + +    + + KK+  +   I+E K
Sbjct: 184 FSATFSNDIRKLA-KGLVNDPVEISVSPRNTTAESVTQFIYEVDKTKKSPLLSTLIKENK 242

Query: 497 ESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                 F       N L +         A IHG  S   +   + SFK G   +L+AT +
Sbjct: 243 WKQVLVFSKTKHGANRLVKQLEGRGILSAAIHGNKSQAARTRALASFKEGKITVLVATDI 302

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
              GID+     ++  +  H     +H++ GR GR    GE IS
Sbjct: 303 AARGIDIDQLEQVVNFDLPHVSEDYVHRI-GRTGRAGNKGEAIS 345


>gi|83313352|ref|YP_423616.1| primosome assembly protein PriA [Magnetospirillum magneticum AMB-1]
 gi|82948193|dbj|BAE53057.1| Primosomal protein N' (replication factor Y) - superfamily II
           helicase [Magnetospirillum magneticum AMB-1]
          Length = 713

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 19/183 (10%)

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           ++++ G  GSGKT V   A+A A+  G Q +++ P   L+ Q   ++ ++ +   +   +
Sbjct: 203 VQLIDGVTGSGKTEVYFEAVAEALARGKQVLVLLPEIALSAQ---WLDRFRRRFGVRPAM 259

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHA-LFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
              ++  A RRK    +A G+A I++G  + LF   + ++ L L++VDE+H    +Q   
Sbjct: 260 WHSDLGDATRRKTWRAVASGEAAIVVGARSGLF---LPFHNLGLIVVDEEHDPAFKQEDH 316

Query: 414 LTQKA----------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           +   A              V+L +ATP   +L     G   +  + ++ AG   +   I+
Sbjct: 317 VCYHARDMAVVRARLGGFPVVLASATPSLESLANVQAGRYGLIHLPDRHAGA--VLPDIV 374

Query: 464 PIN 466
           P++
Sbjct: 375 PVD 377


>gi|84683491|ref|ZP_01011394.1| primosomal protein N' [Maritimibacter alkaliphilus HTCC2654]
 gi|84668234|gb|EAQ14701.1| primosomal protein N' [Rhodobacterales bacterium HTCC2654]
          Length = 729

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 41/259 (15%)

Query: 200 PSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           PS+ + + + H+    K     + ARER+   E+L  Q       K+  +E G+  +V  
Sbjct: 112 PSMRKIYRLGHHEPDRK-----TEARERVL--EVLESQAHSAFTLKELAEEAGVTSSVVK 164

Query: 260 KIA-------QKILRNIPF------SPTKS---QESAIKDILQDMSQKNRM-LRILQGDV 302
            +        ++  R++PF      +P K+    ++A    L+D  +       +L+G  
Sbjct: 165 GLVKLGAVEEEESPRDLPFPHLDYTAPGKALTGDQAAAAGALRDGVRSGTFGATLLRGVT 224

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT V L A+A  +  G QA+++ P   L     EF+K+  +            +   
Sbjct: 225 GSGKTEVYLEAVAECLAQGRQALVLLPEIALTS---EFLKRVEERFGAKPAEWHSGVTMT 281

Query: 363 HRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--- 418
            RR+    +A G A ++IG   ALF   + +  + L++VDE+H    +Q   +   A   
Sbjct: 282 ERRRVWRMVAEGGAQMVIGARSALF---LPFRDIGLIVVDEEHDNSYKQEDGVLYSARDM 338

Query: 419 -------TAPHVLLMTATP 430
                      V+L +ATP
Sbjct: 339 SVLRGSINGAQVVLASATP 357


>gi|331655633|ref|ZP_08356625.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Escherichia coli M718]
 gi|331046734|gb|EGI18819.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Escherichia coli M718]
          Length = 756

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 245 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 300

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 301 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 354


>gi|320180698|gb|EFW55624.1| Helicase PriA essential for oriC/DnaA-independent DNA replication
           [Shigella boydii ATCC 9905]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|309810029|ref|ZP_07703876.1| putative ComF operon protein 1 [Lactobacillus iners SPIN 2503V10-D]
 gi|308169669|gb|EFO71715.1| putative ComF operon protein 1 [Lactobacillus iners SPIN 2503V10-D]
          Length = 428

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 141/346 (40%), Gaps = 53/346 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q     D+L  +  +N    ++    G+GKT +   A+   ++ G    +  P   +
Sbjct: 90  TDRQAKVSADLLHAL--QNNQDHLVHAVTGAGKTEMLFKAVEYFLQQGKYVALATPRLDV 147

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             + Y  + +   NT+I          + H + A +     +  II  TH L    ++YY
Sbjct: 148 VNELYPRMCRAFANTKI---------GKYHGKMAQD--PDNEPFIICTTHQL----LKYY 192

Query: 394 KLI-LVIVDEQHRFGVQQRLKL---TQKATAP--HVLLMTATPIPRTLVLTSLGDIDISK 447
           +   L+I+DE   F       L    + A  P      +TATP    L     G++  S 
Sbjct: 193 QAFDLIIIDEVDAFPYVNNPMLYYGAKNAIKPTGQTFYLTATPSKDMLTEVKNGEMGYSL 252

Query: 448 ITEKPAG------------RKPIK-TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + ++  G            RK I    + P      +I+ L  +++ GK      P+I E
Sbjct: 253 LQQRFHGGLLAVPEEYLFWRKYISGESLHPF-----LIKVLNEIINSGKPLLVFVPRIAE 307

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                    +  + ++ +   S + I     SD +++  ++ F+N    +L+ TT++E G
Sbjct: 308 ---------LGLYQTILQKKYSQLVIASVHSSDKNRQQKVEQFRNREISILLTTTILERG 358

Query: 555 IDVVDASIIIIENAEH-FGLAQLHQLRGRVGRG--EEISSCILLYH 597
           +      +I+IE  +  +  A L Q+ GRVGR   +++   I  YH
Sbjct: 359 VTFPGVQVIVIEADDAIYTTAGLVQIAGRVGRAATDQVGRVIFCYH 404


>gi|288925923|ref|ZP_06419853.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17]
 gi|288337347|gb|EFC75703.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17]
          Length = 375

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 147/346 (42%), Gaps = 61/346 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q+ AI   L+       +L I Q   G+GKT    I +   +            +
Sbjct: 23  TPTPIQQKAIPIGLEGRD----LLGIAQ--TGTGKTAAFAIPIIQQLAKSADDNRRRDIK 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  E  K Y++ T++   +I G + Q  + K LER       I+I T 
Sbjct: 77  ALILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKELER----GVDILIATP 132

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPI 431
               D I  + + L      ++DE  R         +++ + L  K      LL +AT +
Sbjct: 133 GRLLDLISQHIITLEHICHFVLDEADRMLDMGFIHDIKKLIPLLPKRR--QTLLFSAT-M 189

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           P T          I+K++ K    KP +  + P++ + + IE+    + + +K   +   
Sbjct: 190 PET----------IAKLS-KSLLYKPARVEVAPVSSVVDTIEQRLYFVEKPQKTDLLVSV 238

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIA-----------IIHGRMSDIDKESVMDSFKNG 540
           +  K + N  ++V    S  +H    IA            IHG  S   ++  + +FK+G
Sbjct: 239 L--KNDGNRSALV---FSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSG 293

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             ++++AT +   GID+ +  ++I  +        +H++ GR GR 
Sbjct: 294 KTRVIVATDIAARGIDIANLQMVINYDLPDVAETYVHRI-GRTGRA 338


>gi|260434308|ref|ZP_05788278.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
 gi|260412182|gb|EEX05478.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
          Length = 607

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 132/318 (41%), Gaps = 33/318 (10%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + +   +E+G    QA+++AP   LA Q  E  K Y+     + V  
Sbjct: 100 QAQTGTGKTAAFALPLLERLESGQKTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLA 159

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRF 406
           + G      +  AL R       +++GT     D ++           L+L   DE  R 
Sbjct: 160 VYGGTDFRSQISALRR----GVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRM 215

Query: 407 GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRKPIKT 460
           G    ++  L Q      V+L +AT  P    L+     D +++T    ++   R   ++
Sbjct: 216 GFIDDVEWILDQLPEQRQVVLFSATMPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRS 275

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           + +P+    E ++R  V+ + G +   I         +  +++        E     +A+
Sbjct: 276 ITVPMPHKLEALQR--VLDACGGEGVIIF--------ARTKAITLTVAETLEAGGHQVAV 325

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           ++G +    +E  ++  ++G+  +L+AT V   G+DV    ++I  +      A +H++ 
Sbjct: 326 LNGDVPQNQRERTVERLRSGSVDILVATDVAARGLDVERIGLVINYDMPFDSEAYVHRI- 384

Query: 581 GRVGRGEEISSCILLYHP 598
           GR GR       +L   P
Sbjct: 385 GRTGRAGRTGEAVLFVTP 402


>gi|84387538|ref|ZP_00990556.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
 gi|84377586|gb|EAP94451.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
          Length = 531

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 127/290 (43%), Gaps = 35/290 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHII 379
           +A+++ P   LA Q    + KY  N  +   ++ G +   PQ      ++++  G + ++
Sbjct: 75  RALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQ------MQKLRKG-SDVL 127

Query: 380 IGTHALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T         Q+++++ +L ++++DE  R      ++  +K       ++   P  R 
Sbjct: 128 VATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRK-------ILAFLPKKRQ 180

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            +L S    D  +   K     P++  + P N     +E+    + + KK+  +   I  
Sbjct: 181 NLLFSATFSDDIRGLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKSAMLAKLI-- 238

Query: 495 KKESNFRSVVERFNSLH-----EHFTS----SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            K++++R V+    + H      HF      S A IHG  S   +   +++FK G  ++L
Sbjct: 239 -KDNDWRQVLVFSKTKHGANKLSHFLDEQGISAAPIHGNKSQGARTKALENFKTGKVRVL 297

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +AT +   GID+     ++  +  +     +H++ GR GR  E+   I L
Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRI-GRTGRAGEVGKAISL 346


>gi|327294865|ref|XP_003232128.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892]
 gi|326466073|gb|EGD91526.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892]
          Length = 399

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 144/352 (40%), Gaps = 79/352 (22%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVLRESQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + LE   HGQ H++ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLE---HGQ-HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++         + +     P  + +V+++ 
Sbjct: 157 MIRRRHLRTRNIKMLVLDEADELLNRGFREQI---------YDIYRYLPPATQVVVVSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
              D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E  F
Sbjct: 208 LPYDVLDMTTKFMT-DPVRILV----------KRDELTL-EGLKQYFIAV---EKEEWKF 252

Query: 501 RSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMDSF 537
            ++ + +++L                         +FT  ++ +HG M   +++S+M  F
Sbjct: 253 DTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQDF 310

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
           + G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 311 RQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 357


>gi|309777852|ref|ZP_07672798.1| competence protein ComFA [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914413|gb|EFP60207.1| competence protein ComFA [Erysipelotrichaceae bacterium 3_1_53]
          Length = 384

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 20/220 (9%)

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           II   H L++    +  LI+  VD     G      +   A   + L +TATP    L  
Sbjct: 149 IICTMHQLYRYHAAFDLLIMDEVDAFPYRGNDVLKHIATHACIGNRLYLTATPDEEMLSE 208

Query: 438 TSLGDIDISKITEKPAGRK---PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE- 493
              G++ + ++ ++P G     P     +P  ++  +I  LK    E  +     P I  
Sbjct: 209 VKKGNLQMVELFQRPHGYPLIVPKVRTALPSMQLLFLIRFLKEQHKEHAQTLVFVPTIAL 268

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +K S++  ++ R  S    FTS           +DKE+V+  F     + LIATTV+E 
Sbjct: 269 AEKMSHWLRILFRCTS----FTSK---------TMDKEAVLIKFHVHHYECLIATTVLER 315

Query: 554 GIDVVDASIIIIENAEH--FGLAQLHQLRGRVGRGEEISS 591
           GI +    ++I + A+H  F  A L Q+ GRVGR  E+ +
Sbjct: 316 GITIKGIHVVIYQ-ADHPVFNEASLIQMIGRVGRNIEMPT 354


>gi|298482320|ref|ZP_07000507.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
 gi|298271607|gb|EFI13181.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
          Length = 374

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 146/347 (42%), Gaps = 51/347 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM--------AAAVEAGGQA 324
           PT  QE AI   L     K  +L   Q   G+GKT    I +         AA   G +A
Sbjct: 24  PTPIQEKAIPPALA----KRDILGCAQ--TGTGKTASFAIPIIQHLQLDKEAARRQGIKA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR----RKALERIAH--GQAHI 378
           +I+ P   LA Q  E I  Y+++T+I   +I G + Q  +    RK ++ +    G+   
Sbjct: 78  LILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDLLRKGIDILVATPGRLLD 137

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPR 433
           ++    +  D+IQY+     ++DE  R    G    +K  L +       L  +AT +P 
Sbjct: 138 LMTQGHIHLDTIQYF-----VLDEADRMLDMGFIHDIKRILPKLPKEKQTLFFSAT-MPD 191

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +++  +           K   + P+K  I P +   + I+++ V   E K+   +   I 
Sbjct: 192 SIISLT-----------KSLLKNPVKIYITPKSSTVDSIKQV-VYFVEKKEKSQLLISIL 239

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIA-------IIHGRMSDIDKESVMDSFKNGTCKLLI 546
            K E     +  R     +     +         IHG  S   ++S + +FK+G  ++++
Sbjct: 240 SKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           AT +   GID+ +  ++I  +        +H++ GR GR   + + +
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRI-GRTGRAGNMGTAL 345


>gi|296121514|ref|YP_003629292.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296013854|gb|ADG67093.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 608

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 132/329 (40%), Gaps = 61/329 (18%)

Query: 302 VGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITG 357
            G+GKT    I M  A++   +  Q +I+AP   LA Q  E  +KY  N + + V  I G
Sbjct: 58  TGTGKTAAFAIPMLQAIDLSSSATQVLILAPTRELAMQVAEAFEKYAANLKGLRVAAIYG 117

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQ 409
                 + + L R     AH+I+GT     D I+   L        +L   DE  R G  
Sbjct: 118 GQDYQLQFRQLNR----GAHVIVGTPGRVMDHIRRGSLKLDSLKGLVLDEADEMLRMGFA 173

Query: 410 QRLK--LTQKATAPHVLLMTATPIPRTLV------LTSLGDIDISK------------IT 449
           + ++  L Q  +   + L +AT +P ++       L +  +I I +            IT
Sbjct: 174 EDVEWILEQTPSQRQIALFSAT-MPDSIRRIAQKHLKNPAEITIKRRTATAETIRQRFIT 232

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  ++ +   I+    ID VI  +K   +    A ++  Q        +R+       
Sbjct: 233 VPPFQKEAVLARILETEPIDAVIIFVKTKSTTVPLAEFLASQ-------GYRT------- 278

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                    A +   +    +E +++  K+G   ++IAT V   G+DV   + +I  +  
Sbjct: 279 ---------AALSSDVPQAQRERIVEHLKSGRLDIVIATDVAARGLDVQRITHVINFDLP 329

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               + +H++ GR GR       IL  HP
Sbjct: 330 SDSESYVHRI-GRTGRAGRQGDTILFLHP 357


>gi|170029482|ref|XP_001842621.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Culex
           quinquefasciatus]
 gi|167863205|gb|EDS26588.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Culex
           quinquefasciatus]
          Length = 815

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 152/372 (40%), Gaps = 68/372 (18%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------------AAAVE 319
            PT  Q  AI   LQ     NR + I   + GSGKTL  LI +                +
Sbjct: 409 EPTPIQRQAIPIGLQ-----NRDI-IGIAETGSGKTLAFLIPLLNWIQGLPKIERQETAD 462

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G  A+I+AP   LAQQ  E  +K+ Q   I   ++ G +    R +   R+  G   I+
Sbjct: 463 QGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGL---SREEQGFRLRLG-CEIV 518

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKL---------TQKA 418
           I T     D ++   L+L     +++DE  R         VQ+ L+          T++A
Sbjct: 519 IATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEA 578

Query: 419 TAPHVLL---MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                L+    T     +T++ T+     + ++  +   R+P    I  + +  E  E++
Sbjct: 579 EDATKLMENFNTKKKYRQTVMFTATMPPAVERLA-RTYLRRPATVYIGSVGKPTERTEQI 637

Query: 476 KVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             +++E +K   +   +    E       N +   +      E    +   +HG      
Sbjct: 638 VHIVTENEKRKKLMEILSRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 697

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVG 584
           +E  + S KNG+  +L+AT V   GID+ D S++I     ++ +A+      H++ GR G
Sbjct: 698 REYALASLKNGSKDILVATDVAGRGIDIKDVSLVI-----NYDMAKTIEDYTHRI-GRTG 751

Query: 585 R----GEEISSC 592
           R    G  IS C
Sbjct: 752 RAGKTGCAISFC 763


>gi|148652579|ref|YP_001279672.1| DEAD/DEAH box helicase domain-containing protein [Psychrobacter sp.
           PRwf-1]
 gi|148571663|gb|ABQ93722.1| DEAD/DEAH box helicase domain protein [Psychrobacter sp. PRwf-1]
          Length = 383

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 134/312 (42%), Gaps = 31/312 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE------------AGGQAVIMAPIGILAQQHYEFIKKY 344
           I Q   G+GKT   LI +  A+                +A+I+AP   LA Q Y+     
Sbjct: 46  IGQAQTGTGKTATFLITIIEALLKRPFADDEMRYIGEPRALILAPTRELANQIYDDAIAL 105

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
           T++T +    + G +    +  AL++       I+I T     D I  YK   V +D   
Sbjct: 106 TKHTSLHSVCVMGGIDYDKQIAALDK---SYTDILIATPGRLIDLI--YKG-HVFLDRIE 159

Query: 405 RFGVQQRLKLTQKATAPHV-LLMTATPIPRT----LVLTSLGDIDISKITEKPAGRKPIK 459
            F + +  ++      P +  LM   P P T    L+ ++  + D+  +  +     P+ 
Sbjct: 160 AFVLDEADRMLDMGFIPDIKRLMRYMP-PNTDRQSLLFSATFNQDVMNLAYQWL-MNPVF 217

Query: 460 TVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             I P ++  +++E+   +L+E  K      I  Q E KK   F +  ++   L+   ++
Sbjct: 218 VEIEPEHKTSDLVEQHFYLLTEADKHQALIQILAQPETKKVIVFANRKDQVKRLYTKLSA 277

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             ++ ++ G +    +E  +D FKNG  K+L+AT V   GI V D S ++          
Sbjct: 278 DHNVVMLSGDVDQAKRERYLDKFKNGNAKVLVATDVAGRGIHVDDISHVVNYTLPDQPDD 337

Query: 575 QLHQLRGRVGRG 586
            +H++ GR GR 
Sbjct: 338 YVHRI-GRTGRA 348


>gi|323497478|ref|ZP_08102496.1| putative ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323317561|gb|EGA70554.1| putative ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 426

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 124/287 (43%), Gaps = 31/287 (10%)

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +AVI+AP   LA Q    I+ YT+ T+I    I G    + ++KALE        +++ 
Sbjct: 75  ARAVILAPTRELAAQIATNIQDYTKYTEIKTVAIYGGAKMSSQQKALE----AGVDVLVA 130

Query: 382 THA-----LFQDSIQYYKLILVIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPI 431
           T       +  +++    L  ++ DE  R    G    ++  ++  AT P  +L +AT  
Sbjct: 131 TPGRLIEHMDLNNVSLVNLEFLVFDEADRMLDMGFISAIENIMSGVATKPQTMLFSATFS 190

Query: 432 PR--TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYW 487
            +  TL    L       +  + A  + +  V+ P+ +     ER + +LSE  G+K + 
Sbjct: 191 AQMNTLATKILRQPKRVSVARENATAETVAHVVYPVEQ-----ERKRELLSELIGRKNWQ 245

Query: 488 ICPQIEEKKESNFRSVVE-RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                   KE+    V E + + +         + HG  +   +   +D FK+G  +++I
Sbjct: 246 QVLVFVNYKETANELVKELKLDGI------KAVLCHGDKAQSARRRALDEFKSGKARVMI 299

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           AT V   G+D+ +   ++  +        +H++ GR GR  +  + +
Sbjct: 300 ATDVAARGLDIQNLPHVVNFDMPFLAEDYVHRI-GRTGRAGQRGNAV 345


>gi|323174326|gb|EFZ59952.1| primosomal protein N' [Escherichia coli LT-68]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH--RFGVQQRL 412
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H   +  Q+  
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQEGW 333

Query: 413 KLTQKATAPH--------VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +   +  A +        ++L +ATP   TL         + ++T +    +P
Sbjct: 334 RYHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARP 386


>gi|312866296|ref|ZP_07726514.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus downei
           F0415]
 gi|311097990|gb|EFQ56216.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus downei
           F0415]
          Length = 446

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 128/313 (40%), Gaps = 27/313 (8%)

Query: 302 VGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +   ++      QAVI AP   LA Q Y+  K+     +  + ++   
Sbjct: 46  TGSGKTHTFLLPIFEKLQENLNQVQAVITAPSRELASQIYQAAKQIADQAETEIRLVN-Y 104

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLK 413
           +    + + +E++  GQ  IIIGT     D I+      +K    +VDE         L 
Sbjct: 105 VGGTDKLRQIEKLKAGQPQIIIGTPGRIYDLIKSSHLDIHKASTFVVDEADMTMDMGFLD 164

Query: 414 LTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
              K  A       +L+ +AT IP+ L         + K    P   K IKT  +  + I
Sbjct: 165 TVDKIAASLPETVQILVFSAT-IPQKLQPF------LKKYLTNPVIEK-IKTQTVIADTI 216

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRM 525
           D  +   K    +  +   I   +       F +  ER + LH    ++   +A IHG +
Sbjct: 217 DNWLLSTKG-RDKNSQILEILTSLHPYLAMIFVNTKERADELHNFLLANGLKVAKIHGGI 275

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +++ +M+  K    + ++AT +   GID+   S  +I +A    L+      GR GR
Sbjct: 276 PPRERKRIMNQIKRLDYEYIVATDLAARGIDIEGVS-HVINDAIPQDLSFFVHRVGRTGR 334

Query: 586 GEEISSCILLYHP 598
                + I LY P
Sbjct: 335 NGLSGTAITLYQP 347


>gi|284924035|emb|CBG37134.1| primosomal protein replication factor [Escherichia coli 042]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH--RFGVQQRL 412
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H   +  Q+  
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQEGW 333

Query: 413 KLTQKATAPH--------VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +   +  A +        ++L +ATP   TL         + ++T +    +P
Sbjct: 334 RYHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTHRAGNARP 386


>gi|256811339|ref|YP_003128708.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
           AG86]
 gi|256794539|gb|ACV25208.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
           AG86]
          Length = 362

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 129/312 (41%), Gaps = 49/312 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           + Q   GSGKT    I +   ++  +G +A+I+ P   LA Q  + I     N  + +  
Sbjct: 43  VAQARTGSGKTASFAIPLIELIDEDSGIEAIILTPTRELAIQVADEIDSLKGNKNLKITK 102

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRF 406
           + G      + KAL++     A+I++GT     D I    L        IL   DE    
Sbjct: 103 VYGGKAIHPQIKALKK-----ANIVVGTPGRVLDHINRGTLNLKNVKYFILDEADEMLNM 157

Query: 407 G-VQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           G ++   K+         +L+ +  +P+    L    +GD +  K               
Sbjct: 158 GFIEDVEKILNACNKNKRILLFSATMPKEILNLAKKYMGDYEFVKA-------------- 203

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV--------ERFNSLHEHF 514
               +I+  IE+  + ++E ++   +C  +++++   F  +V        +   ++    
Sbjct: 204 ----KINANIEQSYIEINENERFETLCRILKDRE---FYGLVFCKTKKDTKDLANMLRDI 256

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 IHG ++   +E V+  FK    K+LIAT V+  GIDV D + +I  +      +
Sbjct: 257 GFKAGAIHGDLNQSQREKVIRLFKQKKIKILIATDVMSRGIDVNDLNCVINYHLPQNPES 316

Query: 575 QLHQLRGRVGRG 586
            +H++ GR GR 
Sbjct: 317 YMHRI-GRTGRA 327


>gi|317014451|gb|ADU81887.1| primosome assembly protein PriA [Helicobacter pylori Gambia94/24]
          Length = 619

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 75/140 (53%), Gaps = 15/140 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + A+A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHPA-SLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      K + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKKVFKEN----LGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFGVQQR 411
             +L L+IVDE+H F  + +
Sbjct: 219 LKELGLIIVDEEHDFSYKSQ 238


>gi|301022815|ref|ZP_07186656.1| primosomal protein [Escherichia coli MS 69-1]
 gi|300397364|gb|EFJ80902.1| primosomal protein [Escherichia coli MS 69-1]
          Length = 746

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 235 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 290

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH--RFGVQQRL 412
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H   +  Q+  
Sbjct: 291 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQEGW 347

Query: 413 KLTQKATAPH--------VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +   +  A +        ++L +ATP   TL         + ++T +    +P
Sbjct: 348 RYHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARP 400


>gi|73965229|ref|XP_861744.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 10 [Canis
           familiaris]
          Length = 616

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 154/398 (38%), Gaps = 67/398 (16%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E   P NV   IA++        PT  Q       L  +     M+ + Q   GSGKTL 
Sbjct: 98  EANFPANVMDVIARQNFT----EPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLS 147

Query: 310 ALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L+     +          G   +++AP   LAQQ  +   +Y +  ++    I G  P+
Sbjct: 148 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 207

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ---- 409
             + + LER       I I T     D ++  K  L     +++DE  R    G +    
Sbjct: 208 GPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIR 263

Query: 410 --------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                    R  L   AT P  +   A    +  +  ++G +++S      A    ++ V
Sbjct: 264 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------ANHNILQIV 317

Query: 462 II--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517
            +   + + +++I  ++ ++SE           +E K   F     R + L         
Sbjct: 318 DVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELTRKMRRDGW 366

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE--VGIDVVDASIIIIENAEHFGLA 574
               IHG  S  +++ V++ FK+G   +LIAT V    +G+DV D   +I  +  +    
Sbjct: 367 PAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLGLDVEDVKFVINYDYPNSSED 426

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 427 YIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 463


>gi|21231720|ref|NP_637637.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768154|ref|YP_242916.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188991291|ref|YP_001903301.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21113422|gb|AAM41561.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573486|gb|AAY48896.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733051|emb|CAP51249.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 458

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 122/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + ++K      N ++
Sbjct: 43  IAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQVGKQLRKLATGIPNMKL 102

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +V  +TG MP   +  +LE  AH    +++GT    Q+  +   L L     +++DE  R
Sbjct: 103 LV--LTGGMPLGPQLASLE--AH-DPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADR 157

Query: 406 F---GVQQRLKLTQKATAPH--VLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPI 458
               G ++ ++        H   LL +AT   I RTL    L D              P+
Sbjct: 158 MLDMGFEEPIREIASRCDKHRQSLLFSATFPDIIRTLARELLKD--------------PV 203

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEH 513
           +  +   +   E+ ++   V    ++       +    ES     N R  V+      + 
Sbjct: 204 EITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLLRFNPESSVVFCNTRKEVDEVAGSLQE 263

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           F  S   +HG M   D++ V+  F N +C +L+A+ V   G+DV D + ++
Sbjct: 264 FGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLAAVV 314


>gi|194433214|ref|ZP_03065495.1| primosomal protein N' [Shigella dysenteriae 1012]
 gi|194418498|gb|EDX34586.1| primosomal protein N' [Shigella dysenteriae 1012]
 gi|332085179|gb|EGI90357.1| primosomal protein N' [Shigella dysenteriae 155-74]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|62862008|ref|NP_001015151.1| dead box protein 80, isoform B [Drosophila melanogaster]
 gi|51951138|gb|EAL24621.1| dead box protein 80, isoform B [Drosophila melanogaster]
          Length = 447

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 144/349 (41%), Gaps = 68/349 (19%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+K QE+A+  +L D  Q      I Q   G+GKT   ++AM + V       Q + ++
Sbjct: 95  TPSKIQETALPTLLADPPQN----MIAQSQSGTGKTAAFVLAMLSRVNVCLNHPQVLCLS 150

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   +  Q  + I       +  A R + ++R    + HI+IGT     D
Sbjct: 151 PTYELAIQTGEVAARMGQFCREI------KLRFAVRGEEVDRSKKIEEHILIGTPGKLLD 204

Query: 389 -SIQYY-----KLILVIVDEQHRF----GVQQRLKLTQKATAPH--VLLMTATPIPRTLV 436
             I++      K+ + ++DE        G   +     K   PH  +L  +AT     + 
Sbjct: 205 WGIKFRLFDMKKISVFVLDEADVMIATQGHHDQCIRIHKMLNPHCQMLFFSATYGKEVMD 264

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              L       I   P         II + R +E +E +K         Y++  + EE K
Sbjct: 265 FARL-------IVADPT--------IIRLMREEESLENIK--------QYYVKCKNEEGK 301

Query: 497 ESNFR------SVVERFNSLHEHFTS------------SIAIIHGRMSDIDKESVMDSFK 538
            +  +      SV +     H   T+            S+A++ G ++ + +  V+D F+
Sbjct: 302 YNAIQNIYGCISVGQAIIFCHTKRTAAWLAAKMTSDGHSVAVLTGDLTVVQRLDVLDRFR 361

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIEN--AEHFGLAQLHQLRGRVGR 585
           +G  K+LI T ++  GID+   +I++  +   +  G+A       R+GR
Sbjct: 362 SGLEKVLITTNILSRGIDIEQVTIVVNFDLPVDLDGMADCETYLHRIGR 410


>gi|331675430|ref|ZP_08376180.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Escherichia coli TA280]
 gi|331067490|gb|EGI38895.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Escherichia coli TA280]
          Length = 756

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 245 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 300

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 301 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 354


>gi|324115663|gb|EGC09599.1| primosomal protein N [Escherichia coli E1167]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|293417440|ref|ZP_06660064.1| primosomal protein N' [Escherichia coli B185]
 gi|291430960|gb|EFF03956.1| primosomal protein N' [Escherichia coli B185]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH--RFGVQQRL 412
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H   +  Q+  
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQEGW 333

Query: 413 KLTQKATAPH--------VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +   +  A +        ++L +ATP   TL         + ++T +    +P
Sbjct: 334 RYHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARP 386


>gi|254563310|ref|YP_003070405.1| RNA helicase [Methylobacterium extorquens DM4]
 gi|254270588|emb|CAX26591.1| RNA helicase [Methylobacterium extorquens DM4]
          Length = 517

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 142/353 (40%), Gaps = 42/353 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + +  K+ Q +       PT  Q  AI  +L     +  +L I Q   G+GKT    + M
Sbjct: 6   LGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLA----RRDVLGIAQ--TGTGKTAAFTLPM 59

Query: 315 AAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
              +E G       + +I+ P   LA Q  E  ++Y  N ++ V +I G +  A +   L
Sbjct: 60  LTMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKL 119

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
            R       ++I T     D  +  KL+L     +++DE  R        +      P +
Sbjct: 120 TR----GTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADR--------MLDMGFIPDI 167

Query: 424 -LLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             ++   P  R TL  ++    +I ++ +          V  P +    + +RL    +E
Sbjct: 168 ERIVKMVPFTRQTLFFSATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAE 227

Query: 482 GKKAYWICPQ-IEEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           G +   +    I    E        +  R V +   SL  H  ++ A+ HG M    + +
Sbjct: 228 GHEKRKVLRHLIRSASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAAL-HGDMDQRARMA 286

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            +D F++G   LL+A+ V   G+D+   S +   +  H     +H++ GR GR
Sbjct: 287 ALDGFRSGEVPLLVASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRI-GRTGR 338


>gi|254571423|ref|XP_002492821.1| Translation initiation factor eIF4A, identical to Tif1p [Pichia
           pastoris GS115]
 gi|238032619|emb|CAY70642.1| Translation initiation factor eIF4A, identical to Tif1p [Pichia
           pastoris GS115]
          Length = 403

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 124/286 (43%), Gaps = 36/286 (12%)

Query: 299 QGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   G+GKT    I+    ++      Q +I+AP   LA Q  + +     +  I V   
Sbjct: 65  QAQSGTGKTATFAISALQRLDEKLKAAQVLILAPTRELALQIKKVVLALGMHLNISVHAC 124

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR----- 405
            G +  A   KA     +    I++GT    QD I+        + +VI+DE        
Sbjct: 125 IGGVDPALDVKAF----NSGVQIVVGTPGRVQDMIERGAFRTENVKMVILDEADEMLSTG 180

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           F  Q     T   +   V+L++AT +P+          ++ ++T K     PI+ ++   
Sbjct: 181 FKEQIYTLFTLLPSTTQVVLLSAT-MPQ----------EVLEVTTKFMN-NPIRILVKKD 228

Query: 466 NRIDEVIERLKVVLSEGKKAY-WICP---QIEEKKESNFRSVVERFNSLHEHFTS---SI 518
               E I++  V + E +  +  +C     I   +   F +   +   L E  T+   ++
Sbjct: 229 QLTLEGIKQFYVDVGEEQYKFDCLCDLYDSISVTQAVIFCNTRRKVEELTERLTAQKFTV 288

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           + IH  +S  +++++M  F+ G+ ++LI+T ++  GIDV   S++I
Sbjct: 289 SAIHSELSQTERDTIMQEFRTGSSRILISTDLLARGIDVQQVSLVI 334


>gi|237798870|ref|ZP_04587331.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021724|gb|EGI01781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 445

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 148/352 (42%), Gaps = 52/352 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AAAVEAGGQAVI 326
           PT  Q +AI   LQ      R LR+     GSGKT   ++ +       A V    +AVI
Sbjct: 23  PTPVQAAAIPLALQ-----GRDLRV-TAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAVI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + +++++Q T +   +ITG      +   L ++      I+IGT    
Sbjct: 77  LLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD----ILIGTPGRL 132

Query: 387 QDSIQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTL- 435
            + +    L L     +++DE  R    G  + ++    + A     +L +AT     L 
Sbjct: 133 LEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLR 192

Query: 436 -----VLTSLGDIDISKITEKPAG-RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                VL     + ++ ++E  +G R  I T        D  + + +V+        W+ 
Sbjct: 193 EMIGKVLKDPQHLQVNSVSELASGTRHQIITA-------DHNVHKEQVL-------NWLL 238

Query: 490 PQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                +K    +N +++ +R             ++HG     D+++ +D  K G  K+++
Sbjct: 239 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
           AT V   G+DV    +++  +    G   +H++ GR GR G +  +  L+ H
Sbjct: 299 ATDVAARGLDVEGLDMVVNFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICH 349


>gi|218701360|ref|YP_002408989.1| primosome assembly protein PriA [Escherichia coli IAI39]
 gi|218371346|emb|CAR19178.1| Primosome factor n' (replication factor Y) [Escherichia coli IAI39]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|319778865|ref|YP_004129778.1| ATP-dependent RNA helicase DbpA [Taylorella equigenitalis MCE9]
 gi|317108889|gb|ADU91635.1| ATP-dependent RNA helicase DbpA [Taylorella equigenitalis MCE9]
          Length = 457

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 135/306 (44%), Gaps = 41/306 (13%)

Query: 302 VGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITG 357
            GSGKTL   + +   +       Q +++ P   LA Q  + I+K  +    I V  + G
Sbjct: 48  TGSGKTLAFGLGIIQKINPSFFACQGLVLTPTHELADQVAQEIRKLARALPNIKVLTLCG 107

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF---GVQ 409
            +     R  +E + HG AHII+GT     D IQ       K+ + ++DE  R    G  
Sbjct: 108 GVAL---RPQIESLKHG-AHIIVGTPGRILDLIQRGDLDLSKVKVFVLDECDRMLDMGFF 163

Query: 410 QRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
             +    KAT          P+ + TL+ ++     I KI+E    R P+   +I   ++
Sbjct: 164 DDIGEISKAT----------PLRKQTLLFSATFPEHIKKISEG-FQRNPVHIELIEEEKV 212

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAII 521
              ++ +    S+ ++ +    QI +  +        N R+  E+ +S       S   +
Sbjct: 213 PTNLDHIFFKTSDSER-FAHSVQILKHYQPISTLAFCNTRTQCEKLSSFLNEQNISSKFL 271

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV--VDASIIIIENAEHFGLAQLHQL 579
           HG M   ++E V+  F N +  +L+AT V   G+D+  +DA ++ IE + +     +H++
Sbjct: 272 HGEMEKREREDVLLQFSNKSLSVLVATDVAARGLDIEGLDA-VLNIELSPNVP-THIHRI 329

Query: 580 RGRVGR 585
            GR GR
Sbjct: 330 -GRTGR 334


>gi|331665590|ref|ZP_08366488.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Escherichia coli TA143]
 gi|331057275|gb|EGI29265.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Escherichia coli TA143]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|291285350|ref|YP_003502168.1| Primosomal protein N' [Escherichia coli O55:H7 str. CB9615]
 gi|290765223|gb|ADD59184.1| Primosomal protein N' [Escherichia coli O55:H7 str. CB9615]
          Length = 756

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 245 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 300

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 301 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 354


>gi|290987403|ref|XP_002676412.1| predicted protein [Naegleria gruberi]
 gi|284090014|gb|EFC43668.1| predicted protein [Naegleria gruberi]
          Length = 407

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 124/309 (40%), Gaps = 35/309 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG-----QAVIMAPIGILAQQHYEFIKKYTQNTQII 351
           I Q   G+GKT    I++   +         Q +++AP   LAQQ ++ I    +  ++ 
Sbjct: 73  IGQAQSGTGKTATFTISLLQRLNISPDVIQPQGLVLAPTRELAQQIHKVIMSLGEYMKVK 132

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHRF 406
           V    G     H    LE       HII+GT     H +    +    + ++++DE    
Sbjct: 133 VHACVGGTKVQHDIAILEE----GVHIIVGTPGRVFHMIQSGHLNVNSIKMLVIDEADEM 188

Query: 407 ---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPA--GRKPIK 459
              G + ++    K       V L +AT     L +T     D  +I  K      + IK
Sbjct: 189 LSRGFKDQIYAIFKNLPQDMQVCLFSATMPTEVLEITDKFMRDPIRILVKKEELTLEGIK 248

Query: 460 TVIIPINRID---EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
              I ++R D   E +  L  VL+  +   +           N R  VE+          
Sbjct: 249 QFYISVDREDYKFETLCDLYKVLTISQCVIF----------CNSRKKVEQLAEQLNKKDF 298

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           +++ +HG M   D+E +M  F+    ++LI T ++  GIDV   S++I  +        L
Sbjct: 299 TVSCMHGEMDPKDRELIMHEFRTSASRVLITTDLLARGIDVHHVSLVINFDLPRHKENYL 358

Query: 577 HQLRGRVGR 585
           H++ GR GR
Sbjct: 359 HRI-GRSGR 366


>gi|283770273|ref|ZP_06343165.1| primosomal protein N' (replication factor Y) (superfamily II
           helicase) [Staphylococcus aureus subsp. aureus H19]
 gi|283460420|gb|EFC07510.1| primosomal protein N' (replication factor Y) (superfamily II
           helicase) [Staphylococcus aureus subsp. aureus H19]
          Length = 670

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 95/460 (20%), Positives = 181/460 (39%), Gaps = 114/460 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P I +  Q    F +++  +    V ++
Sbjct: 157 LLHGVTGSGKTEVYLQTIEDVLSQGKQAMMLVPEIALTPQMVLRFKRRFGDD----VAVL 212

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHA-LFQDSIQYYKLILVIVDEQHRFGVQQR--- 411
              +    R    ++I  G+A + +G  + +F     +  L L+I+DE+H    +Q    
Sbjct: 213 HSGLSNGERYDEWQKIRDGRARVSVGARSSVF---APFKNLGLIIIDEEHESTYKQEDYP 269

Query: 412 ----LKLTQKATAPH---VLLMTATP-----------------IPRTLVLTSLGDIDISK 447
                ++ Q  +  H   V+L +ATP                 +P  +   +L +IDI  
Sbjct: 270 RYHAREIAQWRSEYHHCPVILGSATPCLESYARAEKGVYHLLSLPNRVNQQALPEIDIVD 329

Query: 448 ITEK-PAGRKPI------KTVIIPINRIDEVI-----------------------ERLKV 477
           + E+   G + +      + + + ++R ++V+                           +
Sbjct: 330 MREELSEGNRSMFSKDLREAIQLRLDRQEQVVLFLNRRGYASFMLCRDCGYVPQCPNCDI 389

Query: 478 VLSEGK-----KAYWI---------CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
            L+  K     K ++          CP  E +      +  ++   L +       II  
Sbjct: 390 SLTYHKTTDLLKCHYCGYQETPPNQCPNCESEHIRQVGTGTQKVEELLQQEFEDARII-- 447

Query: 524 RMSDIDK-------ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE------H 570
           RM D+D        E ++  F+ G   +L+ T +I  G+D  + +++ + NA+       
Sbjct: 448 RM-DVDTTSKKGAHEKLLTEFEKGNGDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPD 506

Query: 571 FGLAQ-----LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           F  ++     L Q+ GR GR E+    I+  + P   + Y+ L V KN  D      +++
Sbjct: 507 FRASERTYQLLTQVAGRAGRHEKAGQVIIQTYNP---DHYSILDVQKN--DYLTFYRQEM 561

Query: 626 KQRKEGEI--------LGIKQSGMPKFLIAQPELHDSLLE 657
           + RK G+           I    M K + A   +H  LL+
Sbjct: 562 EYRKLGKYPPYYYLINFTISHKEMKKVMEASQHVHKILLQ 601


>gi|269468447|gb|EEZ80112.1| hypothetical protein Sup05_1361 [uncultured SUP05 cluster
           bacterium]
          Length = 461

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 132/317 (41%), Gaps = 31/317 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I QG  GSGKT    + +   ++      Q++++ P   LA Q    I+K  +    I V
Sbjct: 45  IGQGKTGSGKTAAFGLGLLQKLDVKSFKAQSIVLCPTRELADQVATEIRKLARAIHNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF- 406
             + G  P   +  +LE   HG  HI++GT       L + +++   +  +++DE  R  
Sbjct: 105 LTLCGGAPFGPQIGSLE---HG-VHIVVGTPGRIEEHLRKGTLKLGSITTLVLDEADRML 160

Query: 407 --GVQQRL-KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK--PIKTV 461
             G Q  + ++ +K  +    L+ +   P  +   +   +    + E P+  +   IK  
Sbjct: 161 DMGFQDTIDEIIEKIPSKRQTLLFSATFPNEIASIAERVMQNPTMVEAPSTHEESTIKQY 220

Query: 462 IIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
               N  D+ +  L+++L++ K       C    + ++     V   F +L         
Sbjct: 221 FYKANSADDRMTALRLLLAKHKPESVLIFCNTKIDTQDVADELVYYGFYAL--------- 271

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG +   +++  +  F N +  +L+AT V   G+D+    +++  N  H     +H++
Sbjct: 272 AIHGDLDQRERDQALIRFSNKSVSVLVATDVAARGLDIDALDMVVNFNIAHDPEVHVHRI 331

Query: 580 RGRVGRGEEISSCILLY 596
            GR GR         LY
Sbjct: 332 -GRTGRAGRSGIACTLY 347


>gi|238023679|ref|YP_002907911.1| ATP-dependent RNA helicase DbpA [Burkholderia glumae BGR1]
 gi|237878344|gb|ACR30676.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
          Length = 465

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 147/335 (43%), Gaps = 34/335 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+I+ P   LA Q  + I++  +  + + V
Sbjct: 49  IAQAKTGSGKTAAFSLALLARLDARRFEVQAMILCPTRELADQVAQEIRRLARAEENVKV 108

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   +  +LE   HG AHI++GT     D ++   L L     +++DE  R  
Sbjct: 109 LTLCGGTPMRPQTASLE---HG-AHIVVGTPGRIMDHLERGSLALGALNTLVLDEADRM- 163

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++   P  R T++ ++     I+K++ +   R P +  +   +
Sbjct: 164 ------LDMGFFDDIATVVRQCPTERLTMLFSATYPEGITKLSRQFL-RNPKEIRLEETH 216

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAI 520
              ++ +R   V +E ++ + +   +   + ++   F +  ++   L +  T+       
Sbjct: 217 DAGKIRQRFYEV-TEDQRLHAVGLLLNHYRPASTIAFCNTKQQCRDLLDVLTAQGFHALA 275

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 276 LHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI- 334

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           GR GR ++    + L     S N   R+  ++  +
Sbjct: 335 GRTGRADQEGWALSLA----SMNEMGRVGAIEQAQ 365


>gi|255083404|ref|XP_002504688.1| predicted protein [Micromonas sp. RCC299]
 gi|226519956|gb|ACO65946.1| predicted protein [Micromonas sp. RCC299]
          Length = 401

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 138/357 (38%), Gaps = 61/357 (17%)

Query: 302 VGSGKTLVALIAMAAAVEAGG-----------------QAVIMAPIGILAQQHYEFIKKY 344
            GSGKTL  L+ +   +EA                    A+++AP   LA Q +    K+
Sbjct: 46  TGSGKTLAFLLPILHRMEARAATPADESSAPASSVPEPDAMVLAPTRELALQIHAEADKF 105

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQ-------AHIIIGTHA-----LFQDSIQY 392
              T+     + G  P  H++K     AHG+         +++ T       + Q S+  
Sbjct: 106 GAATRAGAVAVYGGAPL-HKQKEELVAAHGRRKRGAATGTVVVATPGRLCDLMKQGSLSL 164

Query: 393 YKLILVIVDEQHRF---GVQQRLK-----LTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
            +   +++DE  R    G + +LK     L    +    LL TAT  P+   +  +    
Sbjct: 165 RRCDFIVLDEADRMLEMGFEPQLKEIFGELPSSESGRQTLLFTAT-WPK--AVRKMAASY 221

Query: 445 ISKITEKPAGR-KPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKE---- 497
           ++K TE   G         +  N+   V +R      +   KK Y +  ++ E       
Sbjct: 222 LAKDTESSEGNGDGGDGAELAANKA--VSQRFVHATDDEKDKKMYDVLCELPEGSRVVAF 279

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +N +  VE        F      +HG     ++E+ +  F +  C L+ AT V   G+D+
Sbjct: 280 ANTKRRVENLAKTFWDFGFGTVSVHGDKKQNEREAALKKFVDNQCPLMFATDVAARGLDI 339

Query: 558 VDASIIIIENAEHFGLAQ-----LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
              + ++     +F +A+     +H++ GR GR  E+   +  ++P   K     L 
Sbjct: 340 KGVTHVV-----NFDMARDVESYVHRI-GRTGRAGELGESVTFWNPDYDKECAPALC 390


>gi|221053806|ref|XP_002258277.1| eukaryotic initiation factor [Plasmodium knowlesi strain H]
 gi|193808110|emb|CAQ38814.1| eukaryotic initiation factor, putative [Plasmodium knowlesi strain
           H]
          Length = 390

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 140/335 (41%), Gaps = 47/335 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+  IK IL           ILQ   G+GKT V  +     V    +  Q +I++P
Sbjct: 40  PSAIQQRGIKPILSGRDV------ILQSQSGTGKTCVFAVGALNCVNRNLSETQVIILSP 93

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA----- 384
              LA+Q  +          + +    G    +   KAL    +   HII GT       
Sbjct: 94  TRELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDIKAL----NNGVHIISGTPGRIYHM 149

Query: 385 --LFQDSIQYYK-LILVIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPRTLVLTSL 440
             L     +Y K L++   DE    G ++++    +  +P+  +++++  +P+       
Sbjct: 150 LNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIVLSSATLPQ------- 202

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
              ++ +IT K   R P+K   I + R +  +E +K      +K  W    + +  ES  
Sbjct: 203 ---EVLEITNKFMHR-PVK---ILVKRDELTLEGIKQFFVSIEKEQWKYETLADLYESLT 255

Query: 499 --------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   N +  V+      +    ++  +H  MS  +++ +M  F+    ++LI+T +
Sbjct: 256 ITQAVVFCNTKMKVDWLTKKMQEANFTVCKMHAGMSQSERDDIMLKFRQCKFRVLISTDI 315

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              G+DV + S+++  +  +   + +H++ GR GR
Sbjct: 316 WGRGLDVQEVSLVVNYDLPNSRESYIHRI-GRSGR 349


>gi|91213477|ref|YP_543463.1| primosome assembly protein PriA [Escherichia coli UTI89]
 gi|117626201|ref|YP_859524.1| primosome assembly protein PriA [Escherichia coli APEC O1]
 gi|237702968|ref|ZP_04533449.1| primosome factor n [Escherichia sp. 3_2_53FAA]
 gi|91075051|gb|ABE09932.1| primosomal protein N' [Escherichia coli UTI89]
 gi|115515325|gb|ABJ03400.1| primosome factor n' (replication factor Y) [Escherichia coli APEC
           O1]
 gi|226902905|gb|EEH89164.1| primosome factor n [Escherichia sp. 3_2_53FAA]
          Length = 756

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 245 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 300

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 301 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 354


>gi|82778889|ref|YP_405238.1| primosome assembly protein PriA [Shigella dysenteriae Sd197]
 gi|309783878|ref|ZP_07678523.1| primosomal protein N' [Shigella dysenteriae 1617]
 gi|81243037|gb|ABB63747.1| primosomal protein N' [Shigella dysenteriae Sd197]
 gi|308928249|gb|EFP73711.1| primosomal protein N' [Shigella dysenteriae 1617]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|191166459|ref|ZP_03028290.1| primosomal protein N' [Escherichia coli B7A]
 gi|309796649|ref|ZP_07691055.1| primosomal protein [Escherichia coli MS 145-7]
 gi|190903559|gb|EDV63277.1| primosomal protein N' [Escherichia coli B7A]
 gi|308119805|gb|EFO57067.1| primosomal protein [Escherichia coli MS 145-7]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|304395420|ref|ZP_07377303.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304356714|gb|EFM21078.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 460

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 155/344 (45%), Gaps = 45/344 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           LR + + S T  Q + +  ILQ      R +R  Q   GSGKT    I +   +++    
Sbjct: 18  LREMGYTSMTPVQAATLPAILQ-----GRDVRA-QAKTGSGKTAAFGIGLLHHIDSTRFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIK---KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            QA+I+ P   LA Q    ++   ++T+N +++   + G  P + +R +L        HI
Sbjct: 72  TQALILCPTRELADQVGNVLRQLARFTRNIKVLT--LCGGQPMSAQRDSLVH----PPHI 125

Query: 379 IIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKAT--APHVLLMTA 428
           ++GT     D I    L L     +++DE  R    G    ++   +AT  +   LL +A
Sbjct: 126 VVGTPGRILDHINRENLKLDQLNTLVLDEADRMLEMGFLNDMETIIEATPASRQTLLFSA 185

Query: 429 T-PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           T P   T + T      +S +TE+ +    I       +  +E +  L  +LS+ + +  
Sbjct: 186 TWPDGITAISTRFQRDALSVVTEEVSELPSIDQQFFEASH-NEKLGLLIALLSDRQPSSC 244

Query: 488 I--CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +  C     K+E +     +   +L+    S++ + HG +   D+E V+  F NG+ ++L
Sbjct: 245 VVFC---NTKRECD-----DVAAALNARDISALPL-HGDLEQRDRERVLIRFANGSGRVL 295

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEE 588
           +AT V   G+D+   S+ ++ N +     ++H  R GR  R  E
Sbjct: 296 VATDVAARGLDI--KSLAMVVNYQLAWDPEIHLHRIGRTARAGE 337


>gi|229099881|ref|ZP_04230804.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-29]
 gi|228683496|gb|EEL37451.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-29]
          Length = 481

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 134/319 (42%), Gaps = 32/319 (10%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI-SKITEKPAG--RKPIKT 460
             F  Q    + +  T    +L +AT +P  +   S   +D  + I  K AG     I+ 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPEDVEKLSRTYMDSPTHIEIKAAGITTDKIEH 219

Query: 461 VIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            +    R +E +  LK V + E   +  I  + +E  +  FR +  R N   +       
Sbjct: 220 TLFE-TREEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVFRQL-NRVNYPCDK------ 271

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      + +H+ 
Sbjct: 272 -IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRT 330

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       I    P
Sbjct: 331 -GRTGRAGNKGKAITFITP 348


>gi|90075746|dbj|BAE87553.1| unnamed protein product [Macaca fascicularis]
          Length = 396

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 135/345 (39%), Gaps = 57/345 (16%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +    Y + +++   
Sbjct: 35  TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKST 94

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 95  CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLD 150

Query: 407 -GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KITE 450
            G + +++            L   AT P  +   A    R     ++G++++S    I +
Sbjct: 151 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQ 210

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
                  I  V +   +  ++I+ ++ +++E           +E K   F     R + L
Sbjct: 211 -------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVETKRRCDDL 252

Query: 511 HEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                        IHG     +++ V++ F++G   +LIAT V   G+DV D   +I  +
Sbjct: 253 TRRMRRDGWPAMCIHGDKGQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYD 312

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 313 YPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 356


>gi|323490311|ref|ZP_08095526.1| ATP-dependent RNA helicase [Planococcus donghaensis MPA1U2]
 gi|323395981|gb|EGA88812.1| ATP-dependent RNA helicase [Planococcus donghaensis MPA1U2]
          Length = 481

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 143/350 (40%), Gaps = 52/350 (14%)

Query: 273 PTKSQESAIKDILQ--DMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIM 327
           PT+ QE  I   L   D++ K++         GSGKT    I +   V   E   QA+I+
Sbjct: 27  PTEVQEKVIPVALSKTDLTVKSQ--------TGSGKTAAFGIPICELVDWEENKPQALIL 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LA Q  E I    +  +I    + G  P A+++  L++    + H+++GT     
Sbjct: 79  TPTRELADQVKEDITNIGRFKRIKAAAVYGKQPFAYQQAELKQ----KCHVVVGTPGRVL 134

Query: 388 DSI--------QYYKLILVIVDEQHRFG-VQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           D I        Q   L+L   DE    G V+Q   +  K       ++ +  +P      
Sbjct: 135 DHIERGTLKLEQIEYLVLDEADEMLNMGFVEQVESIINKLPKQRTTMLFSATLPE----- 189

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEE-- 494
                ++ K+ +K     P    I     + + I+    V++E KK   +     IE   
Sbjct: 190 -----NVEKL-QKKYMIDPQHIEIASTETLTDQIDHSLFVVAEQKKFSLLRDVTIIENPD 243

Query: 495 ------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                 + + N   V+E+   L +H+ +   + HG M   D+ +VM+ FK G  + L+AT
Sbjct: 244 SCIIFCRTKDNVDFVMEQ---LEKHYYTCDKL-HGGMLQEDRTAVMNEFKRGEFRYLVAT 299

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   GID+   + +I  +      + +H+  GR GR  +    I    P
Sbjct: 300 DVAARGIDIDSITHVINFDLPMEKESYVHR-SGRTGRAGKTGKAISFVTP 348


>gi|148975750|ref|ZP_01812581.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
 gi|145964823|gb|EDK30075.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
          Length = 551

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 129/293 (44%), Gaps = 41/293 (13%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHII 379
           +A+++ P   LA Q    + KY  N  +   ++ G +   PQ      ++++  G + ++
Sbjct: 75  RALVLTPTRELAAQVNGSVVKYGLNLPLTSSVVFGGVKINPQ------MQKLRKG-SDVL 127

Query: 380 IGTHALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T         Q+++++ +L ++++DE  R      ++  +K       ++   P  R 
Sbjct: 128 VATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRK-------ILAFLPKKRQ 180

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            +L S    D  +   K     P++  + P N   + +E+    + + KK+  +   I  
Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAKTVEQSIYPVDKKKKSPMLAKLI-- 238

Query: 495 KKESNFRSVV------------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            K++++R V+             RF  L E   ++ A IHG  S   +   +++FK G  
Sbjct: 239 -KDNDWRQVLVFSKTKHGANKLARF--LDEQGITA-APIHGNKSQGARTKALENFKTGKV 294

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           ++L+AT +   GID+     ++  +  H     +H++ GR GR  E+   I L
Sbjct: 295 RVLVATDIAARGIDIPQLPQVVNFDLPHVSEDYVHRI-GRTGRAGEVGKAISL 346


>gi|2370593|emb|CAA73168.1| translation initiation factor eIF4A II [Xenopus laevis]
          Length = 413

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 138/316 (43%), Gaps = 50/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 79  IAQAQSGTGKTATFAISILQQIELDMKATQALMLAPTRELAQQIQKVVMALGDYMGASCH 138

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 139 ACIGG---TNVRAEVQKLQSEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 195

Query: 406 FGVQQRL-KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            G + ++  + QK     VL M A    + ++L++    D+ ++T+K   R PI+   I 
Sbjct: 196 RGFKDQIYDIFQK-----VLSMNA----QVVLLSATMPADVLEVTKKFM-RDPIR---IL 242

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEHF 514
           + + +  +E ++      ++  W    + +  E+          N R  V+         
Sbjct: 243 VKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR 302

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEH 570
             +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I      N E+
Sbjct: 303 DFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNREN 362

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H    R+GRG
Sbjct: 363 Y----IH----RIGRG 370


>gi|50291147|ref|XP_448006.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661189|sp|Q6FP38|DBP1_CANGA RecName: Full=ATP-dependent RNA helicase DBP1
 gi|49527317|emb|CAG60957.1| unnamed protein product [Candida glabrata]
          Length = 604

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/293 (19%), Positives = 128/293 (43%), Gaps = 33/293 (11%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q ++  KKYT  + +   ++ G  P   + + ++R      ++++ T
Sbjct: 223 SALVLAPTRELAIQIFDEAKKYTYRSWVKPYVVYGGAPIGQQMRDMDR----GCNLLVAT 278

Query: 383 HALFQDSIQYYKLILV-----IVDEQHRF---GVQQRLK-LTQKATAPHV----LLMTAT 429
                D ++  K+ LV     ++DE  R    G + +++ + +    P V     LM + 
Sbjct: 279 PGRLNDLLERGKISLVNVKYLVLDEADRMLDMGFEPQIRHIVEDCDMPSVNDRQTLMFSA 338

Query: 430 PIPRT---LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKK 484
             PR    L    L D     +    +  + I+  ++ +   D+    L ++++E  G  
Sbjct: 339 TFPREIQHLARDFLKDYIFLSVGRVGSTSENIQQKVLFVEDYDKNSALLDILINEIDGLT 398

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             ++  +    + ++F  +V+ F +           IHG  +  ++E  + +F+NG   +
Sbjct: 399 LVFVETKRMADQLTDFL-IVQNFKA---------TAIHGDRTQAERERALHAFRNGIANI 448

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           L+AT V   G+D+ + + +I  +        +H++ GR GR   +      ++
Sbjct: 449 LVATAVAARGLDIPNVTNVINYDLPTDIDDYVHRI-GRTGRAGNVGVATSFFN 500


>gi|332998433|gb|EGK18031.1| primosomal protein N' [Shigella flexneri K-272]
 gi|333014126|gb|EGK33483.1| primosomal protein N' [Shigella flexneri K-227]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|297531386|ref|YP_003672661.1| helicase [Geobacillus sp. C56-T3]
 gi|297254638|gb|ADI28084.1| helicase domain protein [Geobacillus sp. C56-T3]
          Length = 463

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 136/314 (43%), Gaps = 69/314 (21%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMP 360
            G+GKT +   A+AAA+E G +  +  P   + +   E   ++ Q   ++ + +  G   
Sbjct: 147 CGAGKTEILFPAIAAALEKGWRVGLATPRTDVVR---ELAPRFRQAFPRVPLAVWYGGSE 203

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG------VQQRLKL 414
           +  R  +L         ++  TH L +    Y    ++IVDE   F       ++  ++ 
Sbjct: 204 ERGRIASL---------VLSTTHQLLR---AYRVFDVMIVDEVDAFPYSVEPMLEYAVRE 251

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK----PA----------------- 453
            +K  A  ++ +TATP       +    +DI++   K    PA                 
Sbjct: 252 ARKEQA-SLIYLTATP-------SRAWQLDITRGKRKAVVIPARYHGRPLPVPMFEWCGN 303

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            RK ++   +P N +  V+ RL    ++GK+A+   P I+E         +E    L + 
Sbjct: 304 WRKRLERGRLPENVLAWVLHRL----AQGKQAFLFVPHIDE---------LEAVTRLLQR 350

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV--VDASIIIIENAEHF 571
               I  +H     +D+   + +F++G   LL+ TT++E G+ V  +D +++  E+   F
Sbjct: 351 VDPRIVGVHA--EALDRAEHVQAFRDGRVPLLVTTTILERGVTVPNIDVAVLGAEDCI-F 407

Query: 572 GLAQLHQLRGRVGR 585
             + L Q+ GRVGR
Sbjct: 408 TESALVQIAGRVGR 421


>gi|293413376|ref|ZP_06656037.1| primosome assembly protein PriA [Escherichia coli B354]
 gi|291468124|gb|EFF10622.1| primosome assembly protein PriA [Escherichia coli B354]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|167896715|ref|ZP_02484117.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 7894]
          Length = 435

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 134/308 (43%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + I++  +  + + V
Sbjct: 19  IAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKV 78

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHII+GT     D +    L L     +++DE  R  
Sbjct: 79  LTLCGGTPMRPQTQSLE---HG-AHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRML 134

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K            P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 135 DMGFFDDIAKVA------RQCPPTRQTLLFSATYPDGIAKLSQQFL-RHP-KRVKLEERH 186

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH      +A+
Sbjct: 187 DDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHVLAL 246

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 247 -HGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVYVHRI- 304

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 305 GRTGRADQ 312


>gi|332186818|ref|ZP_08388560.1| primosome assembly protein PriA [Sphingomonas sp. S17]
 gi|332013151|gb|EGI55214.1| primosome assembly protein PriA [Sphingomonas sp. S17]
          Length = 723

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 95/230 (41%), Gaps = 29/230 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           ++ Q +A   ++  ++       +L G  GSGKT V   A+A AV  G Q +++ P   L
Sbjct: 192 SEDQRAAADTLVAGVAAHAFQPVLLDGVTGSGKTEVYFEAVAEAVAEGRQVLVLLPEIAL 251

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            +    F+K++              +  + RR+A   IA GQ  + +G   ALF   + Y
Sbjct: 252 TE---PFLKRFHDRFGCEPVAWHSGLRSSQRRRAWRAIASGQGLVTVGARSALF---LPY 305

Query: 393 YKLILVIVDEQHRFGVQQR----------LKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
             L L++VDE H    +Q             +  K     V+L +ATP   T    +LG 
Sbjct: 306 RNLGLIVVDEAHETSFKQEDGVHYHARDVAVMRGKFEPCPVILASATPAIETRQQVALGR 365

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
               K+   P    P +            IE + ++ +  ++  WI P++
Sbjct: 366 YTEVKL---PGRFGPAQM---------PTIEAIDLIQNPPERGRWIAPKL 403


>gi|326475356|gb|EGD99365.1| eukaryotic translation initiation factor 4 [Trichophyton tonsurans
           CBS 112818]
 gi|326482351|gb|EGE06361.1| eukaryotic initiation factor 4A [Trichophyton equinum CBS 127.97]
          Length = 396

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 122/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    V+      QA+I+AP   LAQQ  + +        +   
Sbjct: 64  IAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMNVDCH 123

Query: 354 IITGNMPQAHRRKALERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
              G        KAL+          G+ H +I    L  D I+ +  +L   DE    G
Sbjct: 124 ACIGGTNVREDMKALQDGPQVVVGTPGRVHDMIQRRVLKTDHIKMF--VLDEADEMLSRG 181

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             +++    +   ++T   V+L++AT  P           D+ ++T K   R P++   I
Sbjct: 182 FTEQIYDIFQFLPQST--QVVLLSATMPP-----------DVLEVTTKFM-RDPVR---I 224

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      +K  W    + +  E+          N R  V+      + 
Sbjct: 225 LVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLQA 284

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 285 RDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335


>gi|320325391|gb|EFW81456.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327468|gb|EFW83481.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330877269|gb|EGH11418.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 445

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 148/352 (42%), Gaps = 52/352 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AAAVEAGGQAVI 326
           PT  Q +AI   LQ      R LR+     GSGKT   ++ +       A V    +AVI
Sbjct: 23  PTPVQAAAIPLALQ-----GRDLRV-TAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAVI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + +++++Q T +   +ITG      +   L ++      I+IGT    
Sbjct: 77  LLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD----ILIGTPGRL 132

Query: 387 QDSIQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTL- 435
            + +    L L     +++DE  R    G  + ++    + A     +L +AT     L 
Sbjct: 133 LEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLR 192

Query: 436 -----VLTSLGDIDISKITEKPAG-RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                VL     + ++ ++E  +G R  I T        D  + + +V+        W+ 
Sbjct: 193 EMIGKVLKDPQHLQVNSVSELASGTRHQIITA-------DHNVHKEQVL-------NWLL 238

Query: 490 PQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                +K    +N +++ +R             ++HG     D+++ +D  K G  K+++
Sbjct: 239 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKYQKDRKAAIDRLKQGGAKIMV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
           AT V   G+DV    ++I  +    G   +H++ GR GR G +  +  L+ H
Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICH 349


>gi|291165179|gb|ADD81194.1| vasa [Auxis thazard]
          Length = 627

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/341 (20%), Positives = 135/341 (39%), Gaps = 72/341 (21%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+ +   + A G            +A+I+AP   L  Q Y   +K+   T 
Sbjct: 240 TGSGKTAAFLLPILQQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTC 299

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   ++ G +   H+ + + R      +++ GT     D I   K+ L     +++DE  
Sbjct: 300 VRPVVVYGGVSTGHQIREISR----GCNVVCGTPGRLLDMIGRGKVGLTKLRYLVLDEAD 355

Query: 405 RF-------------------GVQQRLKLTQKATAPHVLLMTATPIPRT--------LVL 437
           R                      + R  L   AT P  +   A    +T        +V 
Sbjct: 356 RMLDMGFEPDMRRLVGSPGMPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVG 415

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +  D++ + I             +   ++ +++++ LK   SE    +     +E K++
Sbjct: 416 GACSDVEQTFIQ------------VTKFSKREQLLDLLKTTGSERTMVF-----VETKRQ 458

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           ++F   +  F    +  T+SI   HG     ++E  +  F++G C +L+AT+V   G+D+
Sbjct: 459 ADF---IATFLCQEKVPTTSI---HGDREQREREQALADFRSGKCPVLVATSVAARGLDI 512

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            D   ++  +  +     +H++ GR GR       +  Y P
Sbjct: 513 PDVQHVVNFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFYDP 552


>gi|258676573|gb|ACV87294.1| VASA DEAD-box protein [Phallusia mammillata]
          Length = 851

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 150/371 (40%), Gaps = 88/371 (23%)

Query: 246 QFKKEIGIPINVEGKIAQKILR-----NIP------------FSPTKSQESAIKDILQDM 288
            F K   IP+ V G  A K +      N+P             SPT  Q+ ++  IL D 
Sbjct: 363 NFNKYDAIPVEVTGVNAPKFINSFEAANLPETIAANVKRANYDSPTPVQKFSLPIILADR 422

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQ 336
                ++   Q   GSGKT   L+ +   +   G            QA+I+ P   L  Q
Sbjct: 423 D----LMACAQ--TGSGKTAAFLLPVLTNLVRTGLASSSFSEKQLPQAIIVGPTRELVYQ 476

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            Y   +K+++ T I   +  G     ++ K L++      H++I T     D I   K+ 
Sbjct: 477 IYLEARKFSRGTIIRPVVAYGGTSTNYQLKELQK----GCHLLIATPGRLMDFINRGKIG 532

Query: 397 L-----VIVDEQHRF---GVQQRL-KLTQKATAP-----HVLLMTAT-P----------I 431
           L     +I+DE  R    G +  + KL      P     H L+ +AT P          +
Sbjct: 533 LSSVQYIILDEADRMLDMGFETEIRKLVDSPGMPAKNERHTLMFSATFPDEIQKLAHDFL 592

Query: 432 PRTLVLTSLGDID--ISKITEKPAGRKPIKTVIIPINRIDE---VIERLKVVLSEGKKAY 486
               +  ++G I    S +T+          V++ +++ D+   +IE L  V   G +  
Sbjct: 593 REDFLFLTVGRIGGACSDVTQ----------VVLQVDQGDKRNKLIELLADVADTGSRTL 642

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                +E K+ ++F +      SL +    + +I HG     ++E  +  FK+G C +L+
Sbjct: 643 VF---VETKRSADFLAC-----SLCQEGYPTTSI-HGDRLQQEREEALRDFKSGKCPILV 693

Query: 547 ATTVIEVGIDV 557
           AT+V   G+D+
Sbjct: 694 ATSVAARGLDI 704


>gi|196248942|ref|ZP_03147642.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
 gi|196211818|gb|EDY06577.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
          Length = 436

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 147/351 (41%), Gaps = 46/351 (13%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIM 327
           + PT+ QE  I   L+  S       + Q   G+GKT   L+ +   ++   A  QAVI 
Sbjct: 25  YKPTEIQERIIPKALRGESM------VGQSQTGTGKTHAYLLPIIEKIDPERAEVQAVIT 78

Query: 328 APIGILAQQHYEFIKKYTQ----NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AP   LA Q Y    K T+    +  I+     G      ++KALE++ H Q HI+IGT 
Sbjct: 79  APTRELATQIYHETLKITKFCPKDRMIVARCFIGG---TDKQKALEKL-HVQPHIVIGTP 134

Query: 384 ALFQDSIQYYKL-----ILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPI 431
               D I+   L       ++VDE            V Q      K     +L+ +AT I
Sbjct: 135 GRINDFIREQALDVHTACTLVVDEADLMLDMGFITDVDQIAARMPKEL--QMLVFSAT-I 191

Query: 432 PRTL---VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           P  L   +   + +    ++  K    K I+ V+IP+   ++V     V++S     Y  
Sbjct: 192 PEKLKPFLKKYMENPTFIQVEPKQTANKNIEHVLIPLRGREKVKLLYDVLVSYN--PYLA 249

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +  +K ++     E  + L E     + ++HG ++  +++ +M+  ++   + ++AT
Sbjct: 250 IVFVNTRKRAD-----EVADQLAEQ-GLKVGVLHGDLTPRERKKMMNQIRDLEFQYVVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
            +   GID+   S +I  N E     Q +  R GR  R         +Y P
Sbjct: 304 DLAARGIDIEGVSHVI--NYELPDDLQFYIHRAGRTARAGYSGIAATIYEP 352


>gi|187934350|ref|YP_001885537.1| ATP-dependent RNA helicase [Clostridium botulinum B str. Eklund
           17B]
 gi|187722503|gb|ACD23724.1| ATP-dependent RNA helicase [Clostridium botulinum B str. Eklund
           17B]
          Length = 382

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 136/310 (43%), Gaps = 29/310 (9%)

Query: 303 GSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GSGKTL  L+ +   +       QA+I+AP   L  Q    IK  + N+ I V+ + G +
Sbjct: 50  GSGKTLAYLLPIFERINTETKDIQAIILAPTHELVMQIEAQIKLLSDNSGINVKSL-GII 108

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRFGVQQRLKL 414
              +    ++++   + HII+G+     D I+  K+       +++DE       +R ++
Sbjct: 109 GDVNINNQIKKLKEVKPHIIVGSTGRVLDLIRKKKITAHTIKTIVIDEVDNLLDPKRAQI 168

Query: 415 TQ---KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINR 467
            +   K T     LM  +      ++ SL ++    +  K  G+  I      V +  +R
Sbjct: 169 VKDIIKTTMRDRQLMAFSASITPEIVDSLNELMKDPLIVKSQGKSSINPNISHVYVKCDR 228

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
            D+     K++ +E  K   I   + + K+    S+      L+ H     A+  G +S 
Sbjct: 229 RDKFEVLRKIIAAEDPKRALIF--VNDNKDIELTSL-----KLNYHNRECFAM-SGSISK 280

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE-HFGLAQLHQLRGRVGRG 586
            ++++ +DSFK G  K+L+++ V   G+D+ D + +   N +    L +     GR  RG
Sbjct: 281 EERKNAIDSFKTGKIKILVSSDVSARGLDITDITHVF--NLDLPLKLDEYLHRSGRTARG 338

Query: 587 EE--ISSCIL 594
                S CI+
Sbjct: 339 NAKGTSICIV 348


>gi|161505406|ref|YP_001572518.1| primosome assembly protein PriA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866753|gb|ABX23376.1| hypothetical protein SARI_03561 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 756

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 14/135 (10%)

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQH 337
            AI   L D S       +L G  GSGKT V L  +   +  G QA++M P IG+  Q  
Sbjct: 232 GAIHSALDDFSAW-----LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT- 285

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLI 396
              I ++ +     VE++   +  + R  A  +  +G+A I+IGT  +LF     +  L 
Sbjct: 286 ---IARFRERFNAPVEVLHSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLG 339

Query: 397 LVIVDEQHRFGVQQR 411
           ++++DE+H    +Q+
Sbjct: 340 VIVIDEEHDSSYKQQ 354


>gi|149923795|ref|ZP_01912187.1| primosomal protein N' [Plesiocystis pacifica SIR-1]
 gi|149815366|gb|EDM74908.1| primosomal protein N' [Plesiocystis pacifica SIR-1]
          Length = 857

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 19/171 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +A+ +EAGG A+++ P I +  Q    F  ++     ++   +
Sbjct: 330 LLHGITGSGKTEVYLRLIASVIEAGGGAIVLVPEIALTPQLAQRFRARFGDAVAVLHSGL 389

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
           T       R  A E I  G+  I+IG   A+F       KL +++VDE+H          
Sbjct: 390 TAQ----QRLDAWEHIRAGERPIVIGARSAIFA---PVPKLRVIVVDEEHDGSFKQEEGV 442

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
           R+  +    +  ++    V+L +ATP   +      G + +  +T +P  R
Sbjct: 443 RYNARDVALVRGRSLDAVVVLGSATPSLESWRNAREGRLALWSLTTRPTPR 493


>gi|90081060|dbj|BAE90010.1| unnamed protein product [Macaca fascicularis]
          Length = 407

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 132/299 (44%), Gaps = 57/299 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 74  IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 133

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 134 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 190

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK  T+  V+L++AT +P           D+ ++T+K   R PI+    
Sbjct: 191 RGFKDQIYEIFQKLNTSIQVVLLSAT-MP----------TDVLEVTKKFM-RDPIR---- 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------RFN 508
                  ++ + + +  EG K ++I  + EE K      + E               + +
Sbjct: 235 -------ILXKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVD 287

Query: 509 SLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            L E   +   +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 288 WLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 346


>gi|148231181|ref|NP_001086413.1| translation initiation factor eIF4A II [Xenopus laevis]
 gi|50603985|gb|AAH77641.1| LOC444845 protein [Xenopus laevis]
          Length = 406

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 128/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDMKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQSEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK ++   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLSSNAQVVLLSAT-MP----------ADVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|41055130|ref|NP_957372.1| eukaryotic initiation factor 4A-III [Danio rerio]
 gi|82209617|sp|Q7ZVA6|IF4A3_DANRE RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|28277876|gb|AAH45939.1| Eukaryotic translation initiation factor 4A, isoform 3 [Danio
           rerio]
 gi|182892106|gb|AAI65833.1| Eif4a3 protein [Danio rerio]
          Length = 406

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 144/340 (42%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    +++   ++      QA+I+AP
Sbjct: 56  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAP 109

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +      G     +  + + ++ +GQ H++ GT     D 
Sbjct: 110 TRELAGQIQKVLLALGDYMNVQCHACIGG---TNVGEDIRKLDYGQ-HVVAGTPGRVFDM 165

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++    +   P   V L++AT     L +T+
Sbjct: 166 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTN 225

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGKKA 485
               D  +I  K      + IK   + + R +   + L             +  +  +K 
Sbjct: 226 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 285

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  ++L
Sbjct: 286 DWL---TEKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGASRVL 326

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 327 ISTDVWARGLDVSQVSLIINYDLPNNRELYIHRI-GRSGR 365


>gi|15804526|ref|NP_290566.1| primosome assembly protein PriA [Escherichia coli O157:H7 EDL933]
 gi|15834116|ref|NP_312889.1| primosome assembly protein PriA [Escherichia coli O157:H7 str.
           Sakai]
 gi|168748765|ref|ZP_02773787.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4113]
 gi|168755621|ref|ZP_02780628.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4401]
 gi|168761679|ref|ZP_02786686.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4501]
 gi|168768239|ref|ZP_02793246.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4486]
 gi|168775227|ref|ZP_02800234.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4196]
 gi|168780854|ref|ZP_02805861.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4076]
 gi|168786793|ref|ZP_02811800.1| primosomal protein N' [Escherichia coli O157:H7 str. EC869]
 gi|168799482|ref|ZP_02824489.1| primosomal protein N' [Escherichia coli O157:H7 str. EC508]
 gi|195937579|ref|ZP_03082961.1| primosome assembly protein PriA [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807288|ref|ZP_03249625.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4206]
 gi|208813721|ref|ZP_03255050.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4045]
 gi|208821617|ref|ZP_03261937.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4042]
 gi|209398783|ref|YP_002273456.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4115]
 gi|217324946|ref|ZP_03441030.1| primosomal protein N' [Escherichia coli O157:H7 str. TW14588]
 gi|254795937|ref|YP_003080774.1| primosome assembly protein PriA [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223569|ref|ZP_05937850.1| Primosome factor n' (replication factor Y) [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257331|ref|ZP_05949864.1| Primosome factor n' (replication factor Y) [Escherichia coli
           O157:H7 str. FRIK966]
 gi|12518841|gb|AAG59130.1|AE005624_6 primosomal protein N'(= factor Y)(putative helicase) [Escherichia
           coli O157:H7 str. EDL933]
 gi|13364338|dbj|BAB38285.1| primosomal protein N' [Escherichia coli O157:H7 str. Sakai]
 gi|187769176|gb|EDU33020.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4196]
 gi|188016740|gb|EDU54862.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4113]
 gi|189001499|gb|EDU70485.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4076]
 gi|189357171|gb|EDU75590.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4401]
 gi|189362760|gb|EDU81179.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4486]
 gi|189367926|gb|EDU86342.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4501]
 gi|189373221|gb|EDU91637.1| primosomal protein N' [Escherichia coli O157:H7 str. EC869]
 gi|189378101|gb|EDU96517.1| primosomal protein N' [Escherichia coli O157:H7 str. EC508]
 gi|208727089|gb|EDZ76690.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4206]
 gi|208734998|gb|EDZ83685.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4045]
 gi|208741740|gb|EDZ89422.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4042]
 gi|209160183|gb|ACI37616.1| primosomal protein N' [Escherichia coli O157:H7 str. EC4115]
 gi|209752208|gb|ACI74411.1| 50S ribosomal subunit protein L31 [Escherichia coli]
 gi|209752210|gb|ACI74412.1| 50S ribosomal subunit protein L31 [Escherichia coli]
 gi|209752212|gb|ACI74413.1| 50S ribosomal subunit protein L31 [Escherichia coli]
 gi|209752214|gb|ACI74414.1| 50S ribosomal subunit protein L31 [Escherichia coli]
 gi|209752216|gb|ACI74415.1| 50S ribosomal subunit protein L31 [Escherichia coli]
 gi|217321167|gb|EEC29591.1| primosomal protein N' [Escherichia coli O157:H7 str. TW14588]
 gi|254595337|gb|ACT74698.1| Primosome factor n' (replication factor Y) [Escherichia coli
           O157:H7 str. TW14359]
 gi|320190965|gb|EFW65615.1| Helicase PriA essential for oriC/DnaA-independent DNA replication
           [Escherichia coli O157:H7 str. EC1212]
 gi|320644575|gb|EFX13632.1| primosome assembly protein PriA [Escherichia coli O157:H- str.
           493-89]
 gi|320649898|gb|EFX18410.1| primosome assembly protein PriA [Escherichia coli O157:H- str. H
           2687]
 gi|320655299|gb|EFX23245.1| primosome assembly protein PriA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660926|gb|EFX28372.1| primosome assembly protein PriA [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665991|gb|EFX33014.1| primosome assembly protein PriA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326338051|gb|EGD61881.1| Helicase PriA essential for oriC/DnaA-independent DNA replication
           [Escherichia coli O157:H7 str. 1044]
 gi|326342654|gb|EGD66427.1| Helicase PriA essential for oriC/DnaA-independent DNA replication
           [Escherichia coli O157:H7 str. 1125]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|157163410|ref|YP_001460728.1| primosome assembly protein PriA [Escherichia coli HS]
 gi|170022054|ref|YP_001727008.1| primosome assembly protein PriA [Escherichia coli ATCC 8739]
 gi|188491974|ref|ZP_02999244.1| primosomal protein N' [Escherichia coli 53638]
 gi|312971775|ref|ZP_07785949.1| primosomal protein N' [Escherichia coli 1827-70]
 gi|157069090|gb|ABV08345.1| primosomal protein N' [Escherichia coli HS]
 gi|169756982|gb|ACA79681.1| primosomal protein N' [Escherichia coli ATCC 8739]
 gi|188487173|gb|EDU62276.1| primosomal protein N' [Escherichia coli 53638]
 gi|309704360|emb|CBJ03709.1| primosomal protein replication factor [Escherichia coli ETEC
           H10407]
 gi|310334152|gb|EFQ00357.1| primosomal protein N' [Escherichia coli 1827-70]
 gi|323934425|gb|EGB30838.1| primosomal protein N [Escherichia coli E1520]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|157155621|ref|YP_001465429.1| primosome assembly protein PriA [Escherichia coli E24377A]
 gi|300921943|ref|ZP_07138092.1| primosomal protein [Escherichia coli MS 182-1]
 gi|301328295|ref|ZP_07221411.1| primosomal protein [Escherichia coli MS 78-1]
 gi|157077651|gb|ABV17359.1| primosomal protein N' [Escherichia coli E24377A]
 gi|300421667|gb|EFK04978.1| primosomal protein [Escherichia coli MS 182-1]
 gi|300845257|gb|EFK73017.1| primosomal protein [Escherichia coli MS 78-1]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|332029665|gb|EGI69554.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
          Length = 595

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 139/338 (41%), Gaps = 43/338 (12%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     + +        G  A+++AP   LAQQ  +    +  ++ I   
Sbjct: 175 TGSGKTLSYILPAIVHINSQPKLSRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIRNT 234

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G  P+  + + L+    G   I+I T     D ++  K  L     +++DE  R   
Sbjct: 235 CLYGGAPKGAQARDLD----GGVEIVIATPGRLLDFLESGKTNLKRCTYLVLDEADRMLD 290

Query: 407 -GVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            G + ++ K+ ++       LM +   P+ +       L     I++  + +  A    +
Sbjct: 291 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKNLAEDFLKDYAQINVGSL-QLSANHNIL 349

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----ESNFRSVVERFNSLHEHF 514
           +  II + +  E   +L  +L E      I  + E K     E+  R  V+      +  
Sbjct: 350 Q--IIDVCQDYEKENKLSTLLKE------IMAESENKTIVFIETKRR--VDEITRKMKRD 399

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 IHG  +  +++ V+  F++G   +L+AT V   G+DV D   +I  +       
Sbjct: 400 GWPAVCIHGDKTQQERDWVLQDFRSGKAPILVATDVAARGLDVEDVKFVINFDYPSCSED 459

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +H++ GR GR ++  +    + P  +  +   + VLK
Sbjct: 460 YVHRI-GRTGRRQKTGTAYTFFTPNNANKANDLIQVLK 496


>gi|331680052|ref|ZP_08380714.1| primosomal protein N [Escherichia coli H591]
 gi|331072378|gb|EGI43711.1| primosomal protein N [Escherichia coli H591]
          Length = 756

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 245 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 300

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 301 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 354


>gi|317404068|gb|EFV84523.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 462

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 141/329 (42%), Gaps = 52/329 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQII-V 352
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + +++  +  QI  V
Sbjct: 45  IAQAKTGSGKTAAFGLGVLQKLDPARLAPQALLLCPTRELADQVAQELRRLAR--QIANV 102

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFG 407
           +I+T     A R +A E +A G AHI++GT    QD     S+    L  +++DE  R  
Sbjct: 103 KILTLCGGAAARPQA-ESLARG-AHIVVGTPGRIQDHLERGSLDLSGLTTLVLDEADRM- 159

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEK----PAGRK------ 456
           V         A A H       P  R TL+ ++    +I K++ +    PA  K      
Sbjct: 160 VDMGFYDDIVAIASHC------PAKRQTLLFSATYPDNIRKLSARFLRNPAEVKVEAQHD 213

Query: 457 -----PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS--VVERFNS 509
                 I   I P  R+D V   L         A+           +  RS  +VER   
Sbjct: 214 ASRIEQIFYEIDPAERLDAVATLLAHFRPVSTLAFC---------NTKIRSHDLVER--- 261

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L     S++A+ +G +   +++ ++  F N +C +L+AT V   G+D+ +   +I  +  
Sbjct: 262 LQAAGISALAL-NGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVINVDVT 320

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                 +H++ GR GRG++    + L  P
Sbjct: 321 KDTEVHVHRI-GRSGRGDQKGLALSLCSP 348


>gi|313108824|ref|ZP_07794809.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
 gi|310881311|gb|EFQ39905.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
          Length = 441

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 151/368 (41%), Gaps = 65/368 (17%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG- 321
           K L ++ FS PT  Q +AI   L+        LR+     GSGKT   L+ +   + A  
Sbjct: 13  KALESLSFSEPTPVQAAAIPKALEGHD-----LRV-TAQTGSGKTAAFLLPLLHRLLAED 66

Query: 322 -----GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN----MPQAHRRKALERIA 372
                 +A+I+ P   LAQQ  + ++++ Q T I   +ITG     +  A  RK  E   
Sbjct: 67  KPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKNPE--- 123

Query: 373 HGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVL-LM 426
                IIIGT     +      L L     +++DE  R        +     A  VL L 
Sbjct: 124 -----IIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADR--------MLDMGFADDVLALA 170

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAG-RKPIKTV-----IIPINRIDEVIERLKV-VL 479
            A P  R  +L S         T   AG  K I  V     ++ +N++ E+ E ++  V+
Sbjct: 171 NACPAERQTLLFS--------ATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVI 222

Query: 480 SEGKKAY------WICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           +    A+      W+       K    +N R   +R           + ++HG     D+
Sbjct: 223 TADDVAHKEQLLQWLLSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDR 282

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEI 589
           +  ++  K G  K+L+AT V   G+DV    ++I  +    G   +H++ GR GR G E 
Sbjct: 283 KLAIERLKQGAVKILVATDVAARGLDVEGLDLVINFDMPRSGDEYVHRI-GRTGRAGAEG 341

Query: 590 SSCILLYH 597
            +  L+ H
Sbjct: 342 LAISLICH 349


>gi|297833696|ref|XP_002884730.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
 gi|297330570|gb|EFH60989.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
          Length = 393

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 135/326 (41%), Gaps = 70/326 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  Q+ AI  ILQ          I Q   G+GKT +  +++   V+      QA+I++P
Sbjct: 58  PSAIQQRAIMPILQGRDV------IAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSP 111

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q    I+    +  +      G        + LE   HG  H++ GT     D 
Sbjct: 112 TRELASQTEMTIQAIGSHGNVQAHACIGGKSVGEDIRKLE---HG-VHVVSGTPGRVCDM 167

Query: 389 ----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
               S++   + L+I+DE       G + ++    +   P   V L++AT     L +T+
Sbjct: 168 IKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDIQVCLVSATLPHEILEMTT 227

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D            P+K ++          +R ++ L EG K ++I     EK+E  
Sbjct: 228 KFMTD------------PVKILV----------KRDELAL-EGIKNFFISV---EKEEWK 261

Query: 500 FRSVVERFNSL------------------HEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
           F ++ + +++L                   E   SS   ++ +HG M   +++ +M+ F+
Sbjct: 262 FETLCDLYDTLTITQAVIFCNTKRKVDFLSEKMRSSNFTVSSMHGDMPQKERDEIMNQFR 321

Query: 539 NGTCKLLIATTVIEVGIDVVDASIII 564
            G  ++LI T V   GIDV   S++I
Sbjct: 322 TGESRVLITTDVFARGIDVHQVSLVI 347


>gi|114794734|pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
          Length = 417

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 71/373 (19%)

Query: 260 KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           ++ + I+ NI  +    PT  Q+ AI  I     +K  ++   Q   GSGKT   L+ + 
Sbjct: 21  EMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQ--TGSGKTAAFLLPIL 74

Query: 316 AAVEAGGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           + + + G                      ++++AP   LA Q YE  +K++  +++   +
Sbjct: 75  SQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCV 134

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---- 405
           + G      + + LER      H+++ T     D ++  K+ L     +++DE  R    
Sbjct: 135 VYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDM 190

Query: 406 -FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKP 457
            F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  + 
Sbjct: 191 GFEPQIRRIVEQDTMPPKGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSEN 249

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F   HE +  +
Sbjct: 250 ITQKVVWVEESDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---SLEDF-LYHEGYACT 304

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-- 575
              IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I     +F L    
Sbjct: 305 S--IHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI-----NFDLPSDI 357

Query: 576 ---LHQLRGRVGR 585
              +H++ GR GR
Sbjct: 358 EEYVHRI-GRTGR 369


>gi|147345|gb|AAA24416.1| primosomal protein n' [Escherichia coli]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|125979227|ref|XP_001353646.1| GA19578 [Drosophila pseudoobscura pseudoobscura]
 gi|54642411|gb|EAL31160.1| GA19578 [Drosophila pseudoobscura pseudoobscura]
          Length = 812

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 134/322 (41%), Gaps = 47/322 (14%)

Query: 302 VGSGKT-------LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT       L+ L+         G   +I+AP   L+ Q Y   KK+ +   I V 
Sbjct: 321 TGSGKTAAFIWPLLMHLMDQRELKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVV 380

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRF-- 406
              G   +  + KALE+     A I++ T     D ++       ++  +++DE  R   
Sbjct: 381 CCYGGGSKWEQSKALEQ----GAEIVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFH 436

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPR--TLVLTSLGD-IDISKITEKPAGRKPIKT 460
            G + +++       P    LL +AT   R   L    L D + I +     A +   ++
Sbjct: 437 MGFEPQVRSICNHVRPDRQTLLFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQS 496

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           V +   P+ + + ++  L   LSEG    ++  + + +  +N   +V+  N L       
Sbjct: 497 VYVFPNPLQKWNWLLCHLVKFLSEGSVLIFVTKKADAETVAN-NLLVKEHNCL------- 548

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-- 575
             ++HG M   D+  V+  FK   C +L+AT V   G+D     I  I N  ++ +A+  
Sbjct: 549 --LLHGDMDQADRNKVITQFKRKECDILVATDVAARGLD-----IPHIRNVVNYDIARDI 601

Query: 576 -LHQLR-GRVGRGEEISSCILL 595
             H  R GR GR  E  +   L
Sbjct: 602 DTHTHRIGRTGRAGEKGNAFTL 623


>gi|331685675|ref|ZP_08386258.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Escherichia coli H299]
 gi|331077146|gb|EGI48361.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Escherichia coli H299]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|300906263|ref|ZP_07123972.1| primosomal protein [Escherichia coli MS 84-1]
 gi|301303413|ref|ZP_07209537.1| primosomal protein [Escherichia coli MS 124-1]
 gi|300401944|gb|EFJ85482.1| primosomal protein [Escherichia coli MS 84-1]
 gi|300841367|gb|EFK69127.1| primosomal protein [Escherichia coli MS 124-1]
 gi|315254308|gb|EFU34276.1| primosomal protein [Escherichia coli MS 85-1]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|300948285|ref|ZP_07162400.1| primosomal protein [Escherichia coli MS 116-1]
 gi|300954664|ref|ZP_07167105.1| primosomal protein [Escherichia coli MS 175-1]
 gi|300318375|gb|EFJ68159.1| primosomal protein [Escherichia coli MS 175-1]
 gi|300452186|gb|EFK15806.1| primosomal protein [Escherichia coli MS 116-1]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|289621648|emb|CBI52431.1| unnamed protein product [Sordaria macrospora]
          Length = 730

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 143/379 (37%), Gaps = 58/379 (15%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDV--GSGKTLVALIAMAAAVEA- 320
           I++N+ +  PT  Q +AI   LQ         R L G    GSGKT   L+ +   +   
Sbjct: 309 IVKNVGYDEPTPIQRAAIPIALQ--------ARDLIGVAVTGSGKTAAFLLPLLVYISEL 360

Query: 321 ----------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                     G  A+I+AP   L QQ     KK+       V  I G      +  AL  
Sbjct: 361 PPLTEYNKNDGPYALILAPTRELVQQIESEAKKFATPLGFTVVSIVGGHSLEEQAYAL-- 418

Query: 371 IAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF---GVQQRLKL-------- 414
                A II+ T     D ++     + +    I+DE  R    G ++ L          
Sbjct: 419 --RNGAEIIVATPGRLVDCLERRLLVFSQCCYTIMDEADRMIDQGFEEPLTKILDAMPVT 476

Query: 415 -----TQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                T  A  P ++        R   T++ T+     + +I +K   R  I T+     
Sbjct: 477 NEKPDTDDAENPQLMSRYVDGKDRYRQTMMYTATMPPIVERIAKKYLRRPAIVTIGNAGE 536

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIA 519
            +D V +R++ V  E K+   +   +   +         N +   +      +H   S  
Sbjct: 537 AVDTVEQRVEFVAGEDKRKKRLQEILNSGQFKPPIIVFVNIKRNCDMVARDIKHMGFSAV 596

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG  +   +E+ + S +NG   +L+AT +   GIDV D S+++  N      +  H++
Sbjct: 597 TLHGSKTQEQREAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRI 656

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR  +    I    P
Sbjct: 657 -GRTGRAGKSGVAITFLGP 674


>gi|170681937|ref|YP_001746322.1| primosome assembly protein PriA [Escherichia coli SMS-3-5]
 gi|170519655|gb|ACB17833.1| primosomal protein N' [Escherichia coli SMS-3-5]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH--RFGVQQRL 412
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H   +  Q+  
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQEGW 333

Query: 413 KLTQKATAPH--------VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +   +  A +        ++L +ATP   TL         + ++T +    +P
Sbjct: 334 RYHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARP 386


>gi|94988990|ref|YP_597091.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94990990|ref|YP_599090.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
 gi|94992883|ref|YP_600982.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
 gi|94542498|gb|ABF32547.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94544498|gb|ABF34546.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
 gi|94546391|gb|ABF36438.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
          Length = 447

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 132/314 (42%), Gaps = 29/314 (9%)

Query: 302 VGSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +       +A  Q VI AP   LA Q ++  K+  ++ Q   EI   N
Sbjct: 47  TGSGKTHTFLLPIFEKLDEAKAEVQVVITAPSRELATQIFDACKQIAKHFQ--EEIRLAN 104

Query: 359 -MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRL 412
            +    + + +E++   Q HI+IGT     D ++      +K    +VDE         L
Sbjct: 105 YVGGTDKLRQIEKLKGSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFL 164

Query: 413 KLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               K  A       +L+ +AT IP+ L         + K    P   + IKT  +  + 
Sbjct: 165 DTVDKIAASLPKSVQILVFSAT-IPQKLQPF------LKKYLTNPVIEQ-IKTKTVIADT 216

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGR 524
           ID  +   K     G+    I   ++      F +  ER + LH   T++   +A IHG 
Sbjct: 217 IDNWLVSTKGRDKNGQ-LLEILKTMQPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGG 275

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +   +++ +M+  K    + ++AT +   GID+   S +I +         +H++ GR G
Sbjct: 276 IPPRERKRIMNQVKKLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTG 334

Query: 585 RGEEISSCILLYHP 598
           R     + I LY P
Sbjct: 335 RNGMAGTAITLYQP 348


>gi|90020294|ref|YP_526121.1| ATP-dependent RNA helicase DbpA [Saccharophagus degradans 2-40]
 gi|89949894|gb|ABD79909.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 464

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 149/344 (43%), Gaps = 53/344 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I QG  GSGKT    + +  +++      Q++++ P   LA Q  + I++  +    I V
Sbjct: 48  IGQGKTGSGKTAAFGLGLLNSLDVKRFYVQSLVLCPTRELADQVAKEIRRLARAIHNIKV 107

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF- 406
             + G MP   +  +LE   HG AHI++GT       + ++++   KL ++++DE  R  
Sbjct: 108 LTLCGGMPFGPQIGSLE---HG-AHIVVGTPGRVEEHVRKNNLDLSKLSVLVLDEADRML 163

Query: 407 --GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             G Q            QR  L   AT P  +   A+ I    V+T +         E  
Sbjct: 164 EMGFQAALDAIIETMPKQRQTLLFSATFPEEIQAIASRIMTAPVMTQV---------EST 214

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSL 510
                IK     ++  D+ +  ++++L + K   A   C     K+E+   +     + L
Sbjct: 215 HDTSTIKQRFYKVDNDDQRLLAVRLLLLQHKPESAVVFC---NTKRETQMVA-----DDL 266

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             H  +++A+ HG +   D++  +  F NG+  +L+AT V   G+D+     +I  +   
Sbjct: 267 AGHGFTALAL-HGDLEQRDRDLTLVRFANGSATVLVATDVAARGLDIESLDAVINYHIAR 325

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
                +H++ GR GR         +Y    S+  + +L+ L+ T
Sbjct: 326 DMEVHVHRI-GRTGRAGAKGIACSIY----SEKEHFKLARLEET 364


>gi|74003456|ref|XP_860391.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 4 [Canis familiaris]
 gi|114590940|ref|XP_001155920.1| PREDICTED: similar to initiation factor 4AII isoform 4 [Pan
           troglodytes]
 gi|114590942|ref|XP_001156431.1| PREDICTED: similar to initiation factor 4AII isoform 10 [Pan
           troglodytes]
          Length = 360

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 74  IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 133

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 134 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 190

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK  T+  V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 191 RGFKDQIYEIFQKLNTSIQVVLLSAT-MP----------TDVLEVTKKFM-RDPIR---I 235

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 236 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHA 295

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 296 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 346


>gi|74314435|ref|YP_312854.1| primosome assembly protein PriA [Shigella sonnei Ss046]
 gi|73857912|gb|AAZ90619.1| primosomal protein N (factor Y), putative helicase [Shigella sonnei
           Ss046]
 gi|323167404|gb|EFZ53112.1| primosomal protein N' [Shigella sonnei 53G]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|325499327|gb|EGC97186.1| primosome assembly protein PriA [Escherichia fergusonii ECD227]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH--RFGVQQRL 412
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H   +  Q+  
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQEGW 333

Query: 413 KLTQKATAPH--------VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +   +  A +        ++L +ATP   TL         + ++T +    +P
Sbjct: 334 RYHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARP 386


>gi|303232077|ref|ZP_07318780.1| primosomal protein N' [Veillonella atypica ACS-049-V-Sch6]
 gi|302513183|gb|EFL55222.1| primosomal protein N' [Veillonella atypica ACS-049-V-Sch6]
          Length = 727

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 7/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T++Q+   + I Q M  ++    +L G  GSGKT + L A A  +  G  A+I+ P  IL
Sbjct: 200 TEAQQIVYEPIKQMMDLESYNTFLLHGVTGSGKTQIYLKAAARCIGKGKTAIILVPEIIL 259

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
             Q    ++++       V +    +  + R    ERI    +HIIIG   A+F  +   
Sbjct: 260 TDQ---IVRRFVSTFGDEVVVFHSKLTISERNNNWERIRRKDSHIIIGARSAVFAPA--- 313

Query: 393 YKLILVIVDEQHRFGVQQ 410
             + L+++DE+H    +Q
Sbjct: 314 EDIGLIVLDEEHDTSYKQ 331


>gi|281181005|dbj|BAI57335.1| primosomal protein N' [Escherichia coli SE15]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|260072689|gb|ACX30586.1| hypothetical protein SUP05_FGYC65E210031 [uncultured SUP05 cluster
           bacterium]
          Length = 440

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 132/317 (41%), Gaps = 31/317 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I QG  GSGKT    + +   ++      Q++++ P   LA Q    I+K  +    I V
Sbjct: 24  IGQGKTGSGKTAAFGLGLLQKLDVKSFKAQSIVLCPTRELADQVATEIRKLARAIHNIKV 83

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G  P   +  +LE   HG  HI++GT    ++ ++   L L     +++DE  R  
Sbjct: 84  LTLCGGAPFGPQIGSLE---HG-VHIVVGTPGRIEEHLRKGTLKLGSITTLVLDEADRML 139

Query: 407 --GVQQRL-KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK--PIKTV 461
             G Q  + ++ +K  +    L+ +   P  +   +   +    + E P+  +   IK  
Sbjct: 140 DMGFQDTIDEIIEKIPSKRQTLLFSATFPNEIASIAERVMQNPTMVEAPSTHEESTIKQY 199

Query: 462 IIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
               N  D+ +  L+++L++ K       C    + ++     V   F +L         
Sbjct: 200 FYKANSADDRMTALRLLLAKHKPESVLIFCNTKIDTQDVADELVYYGFYAL--------- 250

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG +   +++  +  F N +  +L+AT V   G+D+    +++  N  H     +H++
Sbjct: 251 AIHGDLDQRERDQALIRFSNKSVSVLVATDVAARGLDIDALDMVVNFNIAHDPEVHVHRI 310

Query: 580 RGRVGRGEEISSCILLY 596
            GR GR         LY
Sbjct: 311 -GRTGRAGRSGIACTLY 326


>gi|260777558|ref|ZP_05886451.1| ATP-dependent RNA helicase DbpA [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605571|gb|EEX31856.1| ATP-dependent RNA helicase DbpA [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 458

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 130/310 (41%), Gaps = 37/310 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I QG  GSGKT    + + + +       Q +++ P   LA Q  + ++   +    I V
Sbjct: 44  IGQGKTGSGKTAAFTLGLLSNLSVKRFRVQTLVLCPTRELADQVAKEVRTLARGIHNIKV 103

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G MP   +  +LE   HG AHI++GT     D +   ++ L     +++DE  R  
Sbjct: 104 LTLCGGMPMGPQIGSLE---HG-AHILVGTPGRILDHLSKGRINLAEMNTLVLDEADRML 159

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIK 459
             G ++ +   + +       LL +AT  P+   +L    + D  + K+ E       I+
Sbjct: 160 EMGFEEAIDAIIDEAPQDRQTLLFSAT-FPKNIESLASKVMRDPQMIKV-ESTHQTTTIE 217

Query: 460 TVIIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
                +N  +E  + L+ +L   K   +   C         N +  V++      H   S
Sbjct: 218 QRFYKLNATEERDDALEALLLTHKPESSVVFC---------NTKKEVQKVTDELSHRGFS 268

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +  IHG M   ++E  +  F N +  +L+AT V   G+DV +   +   N E     ++H
Sbjct: 269 VVEIHGDMEQREREQALTMFANKSVSILVATDVAARGLDVDNLDAVF--NFELSRDPEVH 326

Query: 578 QLR-GRVGRG 586
             R GR GR 
Sbjct: 327 VHRIGRTGRA 336


>gi|257141454|ref|ZP_05589716.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
          Length = 465

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 134/302 (44%), Gaps = 30/302 (9%)

Query: 303 GSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGN 358
           GSGKT    +A+ A ++A     QA+++ P   LA Q  + +++  +  + + V  + G 
Sbjct: 55  GSGKTAAFSLALLARLDARRFDVQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGG 114

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLK 413
            P   + ++LE   HG AHII+GT     D +    L L     +++DE  R        
Sbjct: 115 TPMRPQTQSLE---HG-AHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFD 170

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
              K            P  +TL+ ++     I+K++++   R P K V +     D  I 
Sbjct: 171 DIAKVA------RLCPPTRQTLLFSATYPDGIAKLSQQFL-RNP-KEVKLEERHDDSKIR 222

Query: 474 RLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
           +    ++E ++ + +   ++  +        +  +   +  + LH     ++A+ HG + 
Sbjct: 223 QRFYEVTEDERLHAVGLLLKHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL-HGELE 281

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ GR GR 
Sbjct: 282 QRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRA 340

Query: 587 EE 588
           ++
Sbjct: 341 DQ 342


>gi|256021580|ref|ZP_05435445.1| primosome assembly protein PriA [Shigella sp. D9]
 gi|323182349|gb|EFZ67758.1| primosomal protein N' [Escherichia coli 1357]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|254039197|ref|ZP_04873247.1| primosome factor n [Escherichia sp. 1_1_43]
 gi|331644673|ref|ZP_08345792.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Escherichia coli H736]
 gi|226838633|gb|EEH70662.1| primosome factor n [Escherichia sp. 1_1_43]
 gi|331036135|gb|EGI08371.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Escherichia coli H736]
          Length = 756

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 245 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 300

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 301 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 354


>gi|227885323|ref|ZP_04003128.1| DNA replication factor Y [Escherichia coli 83972]
 gi|300975846|ref|ZP_07173195.1| primosomal protein [Escherichia coli MS 45-1]
 gi|301048651|ref|ZP_07195663.1| primosomal protein [Escherichia coli MS 185-1]
 gi|222035647|emb|CAP78392.1| Primosomal protein N' [Escherichia coli LF82]
 gi|227837699|gb|EEJ48165.1| DNA replication factor Y [Escherichia coli 83972]
 gi|300299518|gb|EFJ55903.1| primosomal protein [Escherichia coli MS 185-1]
 gi|300410199|gb|EFJ93737.1| primosomal protein [Escherichia coli MS 45-1]
 gi|307556078|gb|ADN48853.1| primosomal protein N' [Escherichia coli ABU 83972]
 gi|312948510|gb|ADR29337.1| primosome assembly protein PriA [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315292707|gb|EFU52059.1| primosomal protein [Escherichia coli MS 153-1]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|673433|emb|CAA40268.1| protein synthesis initiation factor 4A [Mus musculus]
 gi|15214821|gb|AAH12547.1| Eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
 gi|29126861|gb|AAH48105.1| Eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
 gi|119598580|gb|EAW78174.1| eukaryotic translation initiation factor 4A, isoform 2, isoform
           CRA_c [Homo sapiens]
          Length = 408

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 75  IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 134

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 135 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 191

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK  T+  V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 192 RGFKDQIYEIFQKLNTSIQVVLLSAT-MP----------TDVLEVTKKFM-RDPIR---I 236

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 237 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHA 296

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 297 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 347


>gi|193063994|ref|ZP_03045080.1| primosomal protein N' [Escherichia coli E22]
 gi|193068098|ref|ZP_03049063.1| primosomal protein N' [Escherichia coli E110019]
 gi|194427391|ref|ZP_03059940.1| primosomal protein N' [Escherichia coli B171]
 gi|218556497|ref|YP_002389411.1| primosome assembly protein PriA [Escherichia coli IAI1]
 gi|260846645|ref|YP_003224423.1| primosome factor n' [Escherichia coli O103:H2 str. 12009]
 gi|293470248|ref|ZP_06664659.1| primosomal protein N' [Escherichia coli B088]
 gi|192929459|gb|EDV83067.1| primosomal protein N' [Escherichia coli E22]
 gi|192958718|gb|EDV89156.1| primosomal protein N' [Escherichia coli E110019]
 gi|194414431|gb|EDX30704.1| primosomal protein N' [Escherichia coli B171]
 gi|218363266|emb|CAR00911.1| Primosome factor n' (replication factor Y) [Escherichia coli IAI1]
 gi|257761792|dbj|BAI33289.1| primosome factor n' [Escherichia coli O103:H2 str. 12009]
 gi|291321458|gb|EFE60897.1| primosomal protein N' [Escherichia coli B088]
 gi|323161224|gb|EFZ47140.1| primosomal protein N' [Escherichia coli E128010]
 gi|323943673|gb|EGB39779.1| primosomal protein N [Escherichia coli H120]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|68475061|ref|XP_718416.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|68475598|ref|XP_718147.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|241948159|ref|XP_002416802.1| ATP-dependent RNA helicase eif4A, putative; eukaryotic initiation
           factor 4A, putative [Candida dubliniensis CD36]
 gi|2500523|sp|P87206|IF4A_CANAL RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|2190248|dbj|BAA20371.1| translation initiation factor [Candida albicans]
 gi|46439903|gb|EAK99215.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|46440181|gb|EAK99490.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|223640140|emb|CAX44387.1| ATP-dependent RNA helicase eif4A, putative [Candida dubliniensis
           CD36]
 gi|238879373|gb|EEQ43011.1| eukaryotic initiation factor 4A [Candida albicans WO-1]
          Length = 397

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 131/301 (43%), Gaps = 66/301 (21%)

Query: 299 QGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   G+GKT    I+    +   E   QA+I+AP   LA Q    I       ++ V   
Sbjct: 66  QAQSGTGKTATFTISALQRINENEKATQALILAPTRELALQIKNVITAIGLYLKVTVHAS 125

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--YYK------LILVIVDEQHRFG 407
            G    +   +A          I++GT     D I+  Y+K       IL   DE    G
Sbjct: 126 IGGTSMSDDIEAF----RSGVQIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSSG 181

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            ++++    +L  + T   ++L++AT +P+          D+ ++T K     P++ ++ 
Sbjct: 182 FKEQIYNIFRLLPETT--QIVLLSAT-MPQ----------DVLEVTTKFMN-NPVRILV- 226

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------------------SNFRSVVE 505
              + DE+         EG K ++I  ++E+ K                    N RS VE
Sbjct: 227 ---KKDELT-------LEGIKQFYINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVE 276

Query: 506 RF-NSLHE-HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
              N L E HFT  ++ IH  +   +++++M  F++G+ ++LI+T ++  GIDV   S++
Sbjct: 277 FLTNKLREQHFT--VSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 334

Query: 564 I 564
           I
Sbjct: 335 I 335


>gi|324006731|gb|EGB75950.1| primosomal protein [Escherichia coli MS 57-2]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH--RFGVQQRL 412
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H   +  Q+  
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQEGW 333

Query: 413 KLTQKATAPH--------VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +   +  A +        ++L +ATP   TL         + ++T +    +P
Sbjct: 334 RYHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARP 386


>gi|331660490|ref|ZP_08361424.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Escherichia coli TA206]
 gi|331052439|gb|EGI24476.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Escherichia coli TA206]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|300819908|ref|ZP_07100092.1| primosomal protein [Escherichia coli MS 107-1]
 gi|300527548|gb|EFK48610.1| primosomal protein [Escherichia coli MS 107-1]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|261838400|gb|ACX98166.1| primosomal protein replication factor [Helicobacter pylori 51]
          Length = 619

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K+ LQ  S       +L GD GSGKT + + ++A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKE-LQKYSAS-----LLFGDTGSGKTEIYMHSIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      K + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKKVFKEN----LGLWHSKLSQTQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 219 LKELGLIIVDEEHDFS 234


>gi|255075181|ref|XP_002501265.1| predicted protein [Micromonas sp. RCC299]
 gi|226516529|gb|ACO62523.1| predicted protein [Micromonas sp. RCC299]
          Length = 432

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 153/363 (42%), Gaps = 53/363 (14%)

Query: 259 GKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           G+   + LR+  F  PT  Q  AI  +L+     + +L +     GSGKTL  L+ M   
Sbjct: 40  GRAMLQRLRDAGFHEPTPIQRQAIPILLEG----SELLAV--APTGSGKTLAFLLPMVTK 93

Query: 318 V-----EAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +     EAGG +A++++P   LAQQ +  +K   + T  +  + +          A +  
Sbjct: 94  LAAKDDEAGGPRALLLSPTKELAQQSFRILKLLCRGTNTLRCVWS---------SATQNN 144

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG----VQQRLKLTQKATAPH 422
              +  I++ T    +  I+  K+ L     +++DE  +      V+Q          P+
Sbjct: 145 EFAKVDILVATPLRLKSLIEKNKVSLGAVRYLVLDEADKLFEMGFVEQVDAAVAACDGPN 204

Query: 423 VL--LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           +   L +AT +P T+      ++  S +T+      PI+  +   N     I +  V   
Sbjct: 205 ITRALFSAT-LPETVE-----NLARSVMTQ------PIRLTVGERNSASGAIAQSLVFCG 252

Query: 481 EGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESV 533
           + +       Q+ ++        F    +R   L +  +     + +IH  MSD  + + 
Sbjct: 253 QERGKLLALRQLIDRGIKPPIIVFVQSKDRAKQLAKELSGDGLHLGLIHAAMSDAKRRAQ 312

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +D F+ G   +L+AT ++  G+D V  S +I  +      + +H++ GR GR     + +
Sbjct: 313 VDRFRAGDTWVLVATDLMARGMDFVGVSTVINYDFPGSPHSYIHRI-GRSGRAGRPGAAV 371

Query: 594 LLY 596
            L+
Sbjct: 372 TLF 374


>gi|218551081|ref|YP_002384872.1| primosome assembly protein PriA [Escherichia fergusonii ATCC 35469]
 gi|218358622|emb|CAQ91272.1| Primosome factor n' (replication factor Y) [Escherichia fergusonii
           ATCC 35469]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH--RFGVQQRL 412
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H   +  Q+  
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQEGW 333

Query: 413 KLTQKATAPH--------VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +   +  A +        ++L +ATP   TL         + ++T +    +P
Sbjct: 334 RYHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARP 386


>gi|218697649|ref|YP_002405316.1| primosome assembly protein PriA [Escherichia coli 55989]
 gi|218354381|emb|CAV01142.1| Primosome factor n' (replication factor Y) [Escherichia coli 55989]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|170782265|ref|YP_001710598.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156834|emb|CAQ02001.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 520

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 136/309 (44%), Gaps = 35/309 (11%)

Query: 297 ILQGDVGSGKT----LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           I Q   G+GKT    L  +  +    E G QA+++ P   LA Q  E ++  T++    V
Sbjct: 42  IGQAKTGTGKTFGFGLPLIQRLGLTPEPGVQALVVVPTRELAVQVTEDLQIATKHRATTV 101

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYK-LILVIVDEQH 404
             I G   +A+  + +E++  G A I++GT     D       S++Y + ++L   D+  
Sbjct: 102 VSIYGG--KAYEGQ-IEQLKAG-AQIVVGTPGRLLDLVGQRLLSLKYVREMVLDEADKML 157

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGDIDIS-KITEKPAG--RKPI 458
             G    ++    Q     H +L +AT P P   +        I  + T+   G  +  I
Sbjct: 158 DLGFLSDIEKLFAQTPAVRHTMLFSATMPGPIVALARRFMTKPIHIRATDPDEGLMQANI 217

Query: 459 KTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           + ++   + +D  EVI R+      GK   +        K +  R +VE  N     F +
Sbjct: 218 RHLVYRAHNMDKDEVIGRILQAEGRGKTVIFT-----RTKRAAAR-LVEELND--RGFNA 269

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             A +HG ++   +E  M +FK G   +LIAT V   GIDV+D + +I         A L
Sbjct: 270 --AAVHGDLNQEQRERAMAAFKAGKKDILIATDVAARGIDVLDVTHVINHTIPEDDKAYL 327

Query: 577 HQLRGRVGR 585
           H++ GR GR
Sbjct: 328 HRV-GRTGR 335


>gi|90416956|ref|ZP_01224885.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2207]
 gi|90331303|gb|EAS46547.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2207]
          Length = 584

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 142/324 (43%), Gaps = 52/324 (16%)

Query: 302 VGSGKTLVALIAMAA-----AVE-----AGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            G+GKT   L+++ +      VE        +A+I+AP   LA Q  E  ++  Q+T + 
Sbjct: 102 TGTGKTAAFLVSIISDLLKHPVEDERYIGEARALILAPTRELAVQIGEDAEQLVQHTDLK 161

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
           V  + G M  A   K L +I      I++GT     D      +   ++ ++++DE  R 
Sbjct: 162 VHTLVGGMDYA---KQLHKIKRAHCDILVGTPGRLLDFASNKDVHLDQVEVLVIDEADRM 218

Query: 407 ---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
              G   +++   +AT P           +TL+ ++    D+ +++E+    KP+K  + 
Sbjct: 219 LDMGFIPQVRRLVRATPPKEDR-------QTLLFSATFTDDVMRLSEQ-WTDKPVKLEME 270

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN------SLHEHFTSS 517
           P     + +E+ K+ ++   + + +   I   K  + +SV+   N      +L E     
Sbjct: 271 PERVATDTVEQ-KIFITTANEKFALLQNI--LKSDDVKSVMVFANRRDICRTLFERLKKQ 327

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              + +I G +    +   ++ FK+G  K+++AT V   GI V   S +I     +F L 
Sbjct: 328 GFKVGLIAGDVPQARRMKTLEGFKSGALKVMVATDVAGRGIHVNGVSHVI-----NFTLP 382

Query: 575 Q-----LHQLRGRVGRGEEISSCI 593
           +     +H++ GR GR  E    I
Sbjct: 383 EEPEDYVHRI-GRTGRAGETGISI 405


>gi|216620|dbj|BAA00491.1| PriA [Escherichia coli K-12]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|332998547|gb|EGK18144.1| primosomal protein N' [Shigella flexneri K-218]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|300938381|ref|ZP_07153128.1| primosomal protein [Escherichia coli MS 21-1]
 gi|300456651|gb|EFK20144.1| primosomal protein [Escherichia coli MS 21-1]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|301112965|ref|XP_002998253.1| eukaryotic initiation factor 4A-III, putative [Phytophthora
           infestans T30-4]
 gi|262112547|gb|EEY70599.1| eukaryotic initiation factor 4A-III, putative [Phytophthora
           infestans T30-4]
          Length = 406

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 150/347 (43%), Gaps = 71/347 (20%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  Q+ AIK  +Q      R L I Q   G+GKT V  I++  +++      QA++++P
Sbjct: 56  PSAIQQRAIKPAIQ-----GRDL-IAQSQSGTGKTAVFSISILQSLDTSSNETQALVVSP 109

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  + +        +      G        + + R+  G   ++ GT     D 
Sbjct: 110 TRELAEQTQKVVLALGDFMNVQCHACIGGKSVG---EDIRRLDFG-VQVVSGTPGRIFDM 165

Query: 390 IQYYKL------ILVI--VDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L      +LVI   DE    G ++++    +   P   VLL++AT     L LT 
Sbjct: 166 IRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLVSATMPQEVLDLT- 224

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                      +    +P+K ++          +R ++ L EG K +++     EK+E  
Sbjct: 225 -----------RKFMNEPVKVLV----------KRDELTL-EGIKQFFVAV---EKEEWK 259

Query: 500 FRSVVERFNSLH--------------EHFTS-------SIAIIHGRMSDIDKESVMDSFK 538
           F ++ + +++L               +  TS       +++ +HG M   +++++M  F+
Sbjct: 260 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMREANFTVSAMHGDMPQKERDAIMQEFR 319

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +G  ++LI T V   G+DV   S++I  +  +     +H++ GR GR
Sbjct: 320 SGGSRVLITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRI-GRSGR 365


>gi|26250702|ref|NP_756742.1| primosome assembly protein PriA [Escherichia coli CFT073]
 gi|26111133|gb|AAN83316.1|AE016770_116 Primosomal protein N' [Escherichia coli CFT073]
          Length = 756

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 245 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 300

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 301 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 354


>gi|332282821|ref|ZP_08395234.1| primosome assembly protein PriA [Shigella sp. D9]
 gi|332105173|gb|EGJ08519.1| primosome assembly protein PriA [Shigella sp. D9]
          Length = 756

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 245 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 300

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 301 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 354


>gi|332186551|ref|ZP_08388295.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
 gi|332013534|gb|EGI55595.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
          Length = 469

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 132/309 (42%), Gaps = 46/309 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKTLVALIAMAAAVEAG------GQA 324
           PT  Q SAI  +L        M+R + G    G+GKT   ++ M   +  G       ++
Sbjct: 24  PTPIQASAIPSVL--------MMRDIIGIAQTGTGKTASFVLPMIDILAHGRSRARMPRS 75

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E  +KY  N ++ + ++ G +    + KALE+       ++I T  
Sbjct: 76  LILEPTRELAAQVAENFEKYGANHKLSMALLIGGVSMGDQIKALEK----GVDVLIATPG 131

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTAT-PIP- 432
              D  Q   ++L     +++DE  R    G    ++   T+       LL +AT P P 
Sbjct: 132 RLMDLFQRGNILLTGCSMLVIDEADRMLDMGFIPDIEEICTKLPKQRQTLLFSATMPPPI 191

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKVVL--SEGKKAYWIC 489
           + L    L +  + ++    +    I   ++P+     E  +RL+ +L   E + A   C
Sbjct: 192 KKLADKFLENPKMIEVARPASTNINITQFVVPVAPQSFEKRKRLRQLLKQDEVRTAIIFC 251

Query: 490 PQIEEKKESNFRSVVERFN-SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    N ++ V   N SL +H   S   IHG M    + + +D FK G   +L+A+
Sbjct: 252 ---------NRKTTVRELNKSLKQHGFRS-GEIHGDMEQPQRLAELDLFKRGEVNILVAS 301

Query: 549 TVIEVGIDV 557
            V   G+D+
Sbjct: 302 DVAARGLDI 310


>gi|331649789|ref|ZP_08350869.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Escherichia coli M605]
 gi|331041422|gb|EGI13572.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Escherichia coli M605]
          Length = 756

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 245 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 300

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 301 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 354


>gi|324012502|gb|EGB81721.1| primosomal protein [Escherichia coli MS 60-1]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|315289634|gb|EFU49027.1| primosomal protein [Escherichia coli MS 110-3]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|307315158|ref|ZP_07594739.1| primosomal protein N' [Escherichia coli W]
 gi|306905417|gb|EFN35953.1| primosomal protein N' [Escherichia coli W]
 gi|315063266|gb|ADT77593.1| primosome factor n' (replication factor Y) [Escherichia coli W]
 gi|323380669|gb|ADX52937.1| primosomal protein N' [Escherichia coli KO11]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
 gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
          Length = 493

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 124/292 (42%), Gaps = 33/292 (11%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q +E +K+Y++ T +   ++ G +    +++AL R       I++ T
Sbjct: 95  RALILTPTRELADQVFESVKRYSKQTPLRSAVVFGGVDIGPQKEALRR----GCEILVAT 150

Query: 383 HALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT-LV 436
                    Q ++   ++ ++++DE  R      L   ++       ++   P  R  L+
Sbjct: 151 PGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLER-------IIRLLPAQRQGLL 203

Query: 437 LTSLGDIDISKITEKPAGR----KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            ++    +I K+     GR    +P++  +   N     I ++   +S   K   +   +
Sbjct: 204 FSATFSNEIRKL-----GRSYLNQPVEIEVAARNATATTITQIAYKMSSDAKRAAVVHLV 258

Query: 493 EEK--KE----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + +  K+    SN +    R     E        IHG  +  D+   +++FK G  ++L+
Sbjct: 259 KSRGLKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGDLEVLV 318

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT V   G+DV     +I  +  +     +H++ GR GR       I L+ P
Sbjct: 319 ATDVAARGLDVAGVPCVINYDLPYNAEDYVHRI-GRTGRAGASGEAIALFTP 369


>gi|291486518|dbj|BAI87593.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. natto BEST195]
          Length = 479

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 145/356 (40%), Gaps = 58/356 (16%)

Query: 260 KIAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALI 312
           +I+  ILR +       PTK Q+S I   L+      R   +++   GSGKT    + L 
Sbjct: 8   QISHDILRALEGLGYTEPTKVQQSVIPAALE------RKDLVVKSQTGSGKTASFGIPLC 61

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            +A   E   QA+I+ P   LA Q  E I    +  +I    + G      ++  L++  
Sbjct: 62  ELADWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQ-- 119

Query: 373 HGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             ++HI++GT     D I+   L L     +++DE         +   ++  A    ++ 
Sbjct: 120 --KSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEM---LNMGFIEQVEA----IIK 170

Query: 428 ATPIPRTLVLTSLG-DIDISKITE-----------KPAG--RKPIKTVIIPINRIDEVIE 473
             P  RT +L S     DI K++            K AG   + I+  +I +   ++   
Sbjct: 171 HLPTERTTMLFSATLPEDIEKLSRQYMQNPEHIEIKAAGLTTRNIEHAVIQVREENKFSL 230

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDK 530
              V+++E   +  I           F    E  N L +           IHG M   D+
Sbjct: 231 LKDVLMTENPDSCII-----------FCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDR 279

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             VM+ FK G  + L+AT V   GID+ + S++I  +      + +H+  GR GR 
Sbjct: 280 FDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPVEKESYVHRT-GRTGRA 334


>gi|281603329|gb|ADA76313.1| Primosome assembly protein PriA [Shigella flexneri 2002017]
          Length = 756

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 245 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 300

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 301 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 354


>gi|260857664|ref|YP_003231555.1| primosome factor n' [Escherichia coli O26:H11 str. 11368]
 gi|260870654|ref|YP_003237056.1| primosome factor n' [Escherichia coli O111:H- str. 11128]
 gi|257756313|dbj|BAI27815.1| primosome factor n' [Escherichia coli O26:H11 str. 11368]
 gi|257767010|dbj|BAI38505.1| primosome factor n' [Escherichia coli O111:H- str. 11128]
 gi|323153988|gb|EFZ40197.1| primosomal protein N' [Escherichia coli EPECa14]
 gi|323177957|gb|EFZ63541.1| primosomal protein N' [Escherichia coli 1180]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|218707561|ref|YP_002415080.1| primosome assembly protein PriA [Escherichia coli UMN026]
 gi|293407555|ref|ZP_06651474.1| primosome assembly protein PriA [Escherichia coli FVEC1412]
 gi|298383303|ref|ZP_06992896.1| primosomal protein N' [Escherichia coli FVEC1302]
 gi|300899913|ref|ZP_07118121.1| primosomal protein [Escherichia coli MS 198-1]
 gi|218434658|emb|CAR15591.1| Primosome factor n' (replication factor Y) [Escherichia coli
           UMN026]
 gi|291425472|gb|EFE98511.1| primosome assembly protein PriA [Escherichia coli FVEC1412]
 gi|298276337|gb|EFI17857.1| primosomal protein N' [Escherichia coli FVEC1302]
 gi|300356541|gb|EFJ72411.1| primosomal protein [Escherichia coli MS 198-1]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|209921415|ref|YP_002295499.1| primosome assembly protein PriA [Escherichia coli SE11]
 gi|300825074|ref|ZP_07105169.1| primosomal protein [Escherichia coli MS 119-7]
 gi|331670788|ref|ZP_08371624.1| primosomal protein N [Escherichia coli TA271]
 gi|209914674|dbj|BAG79748.1| primosomal protein N' [Escherichia coli SE11]
 gi|300522426|gb|EFK43495.1| primosomal protein [Escherichia coli MS 119-7]
 gi|320198857|gb|EFW73455.1| Helicase PriA essential for oriC/DnaA-independent DNA replication
           [Escherichia coli EC4100B]
 gi|324020552|gb|EGB89771.1| primosomal protein [Escherichia coli MS 117-3]
 gi|331062043|gb|EGI33966.1| primosomal protein N [Escherichia coli TA271]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|254464245|ref|ZP_05077656.1| primosomal protein N', putative [Rhodobacterales bacterium Y4I]
 gi|206685153|gb|EDZ45635.1| primosomal protein N', putative [Rhodobacterales bacterium Y4I]
          Length = 735

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 35/154 (22%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L A+AA + AG QA+++ P I + A    EF+ +        VE  
Sbjct: 225 LLKGVTGSGKTEVYLEAVAATLRAGRQALVLLPEIALTA----EFLTR--------VEAR 272

Query: 356 TGNMPQ--------AHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRF 406
            G  P           RR+  + +  G A ++IG   ALF   + +  L L+IVDE+H  
Sbjct: 273 FGAKPAEWHSGATLTERRRVWKMVGQGAAQLVIGARSALF---LPFRDLGLIIVDEEHDT 329

Query: 407 GVQQRLKLTQKA----------TAPHVLLMTATP 430
             +Q   +   A           +  V+L +ATP
Sbjct: 330 SYKQEDGVLYNARDMAVLRAAMCSAQVVLASATP 363


>gi|116051486|ref|YP_789681.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586707|gb|ABJ12722.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 446

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 151/368 (41%), Gaps = 65/368 (17%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG- 321
           K L ++ FS PT  Q +AI   L+        LR+     GSGKT   L+ +   + A  
Sbjct: 18  KALESLSFSEPTPVQAAAIPKALEGHD-----LRV-TAQTGSGKTAAFLLPLLHRLLAED 71

Query: 322 -----GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN----MPQAHRRKALERIA 372
                 +A+I+ P   LAQQ  + ++++ Q T I   +ITG     +  A  RK  E   
Sbjct: 72  KPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKNPE--- 128

Query: 373 HGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVL-LM 426
                IIIGT     +      L L     +++DE  R        +     A  VL L 
Sbjct: 129 -----IIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADR--------MLDMGFADDVLALA 175

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAG-RKPIKTV-----IIPINRIDEVIERLKV-VL 479
            A P  R  +L S         T   AG  K I  V     ++ +N++ E+ E ++  V+
Sbjct: 176 NACPAERQTLLFS--------ATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVI 227

Query: 480 SEGKKAY------WICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           +    A+      W+       K    +N R   +R           + ++HG     D+
Sbjct: 228 TADDVAHKEQLLQWLLSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDR 287

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEI 589
           +  ++  K G  K+L+AT V   G+DV    ++I  +    G   +H++ GR GR G E 
Sbjct: 288 KLAIERLKQGAVKILVATDVAARGLDVEGLDLVINFDMPRSGDEYVHRI-GRTGRAGAEG 346

Query: 590 SSCILLYH 597
            +  L+ H
Sbjct: 347 LAISLICH 354


>gi|78042906|ref|YP_359101.1| DEAD-box ATP dependent DNA helicase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995021|gb|ABB13920.1| ATP-dependent RNA helicase, DEAD box family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 430

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 142/344 (41%), Gaps = 43/344 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAPI 330
           PT  Q+ AI  IL+  +       + Q   G+GKT   L+ +   ++ G   Q +I+ P 
Sbjct: 25  PTPIQKEAIPLILEGHNL------VGQAPTGTGKTAAYLLPVLQRIQRGKKAQVLIVTPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG---QAHIIIGTHALFQ 387
             LA Q  + + K  +  ++    + G        +A+ER   G      +I+GT     
Sbjct: 79  RELALQVADEVAKLGKYLKVRALAVYGG-------QAIERQIRGLRQGVEVIVGTPGRIL 131

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIP-RTL 435
           D I        +   +IL   DE    G    ++  L         LL +AT P P +T+
Sbjct: 132 DHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPIKTI 191

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK-KAYWICPQIEE 494
           +   LG     K+  +      I+ V   +   +++   + ++ SE   +A   C     
Sbjct: 192 IKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSELPIQAIVFC----- 246

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAI-IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           + +     VVE+ N     F    A  +HG MS  ++   + SFK G  +LL+AT V   
Sbjct: 247 RTKKRVDEVVEQLN-----FRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAAR 301

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           G+D+ D S +I  +      + +H++ GR GR       I L +
Sbjct: 302 GLDIPDVSHVINFDIPQNPESYIHRI-GRTGRAGREGKAITLIN 344


>gi|56605748|ref|NP_001008336.1| eukaryotic initiation factor 4A-II [Rattus norvegicus]
 gi|77404209|ref|NP_001029216.1| eukaryotic initiation factor 4A-II [Bos taurus]
 gi|83700235|ref|NP_001958.2| eukaryotic initiation factor 4A-II [Homo sapiens]
 gi|154147698|ref|NP_001093665.1| eukaryotic initiation factor 4A-II [Sus scrofa]
 gi|176865892|ref|NP_038534.2| eukaryotic initiation factor 4A-II isoform a [Mus musculus]
 gi|197098908|ref|NP_001126879.1| eukaryotic initiation factor 4A-II [Pongo abelii]
 gi|307548907|ref|NP_001182590.1| eukaryotic translation initiation factor 4A2 [Macaca mulatta]
 gi|55621670|ref|XP_516936.1| PREDICTED: eukaryotic initiation factor 4A-II isoform 11 [Pan
           troglodytes]
 gi|74003468|ref|XP_545242.2| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 2 [Canis familiaris]
 gi|194222679|ref|XP_001498096.2| PREDICTED: similar to Eukaryotic initiation factor 4A-II
           (ATP-dependent RNA helicase eIF4A-2) (eIF4A-II)
           (eIF-4A-II) [Equus caballus]
 gi|291400269|ref|XP_002716499.1| PREDICTED: eukaryotic translation initiation factor 4A, isoform 2
           [Oryctolagus cuniculus]
 gi|301758024|ref|XP_002914858.1| PREDICTED: eukaryotic initiation factor 4A-II-like [Ailuropoda
           melanoleuca]
 gi|2507330|sp|P10630|IF4A2_MOUSE RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|45645183|sp|Q14240|IF4A2_HUMAN RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|73621053|sp|Q5R4X1|IF4A2_PONAB RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|81889423|sp|Q5RKI1|IF4A2_RAT RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|109892472|sp|Q3SZ65|IF4A2_BOVIN RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|673434|emb|CAA40269.1| protein synthesis initiation factor 4A [Mus musculus]
 gi|15489200|gb|AAH13708.1| Eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
 gi|26345442|dbj|BAC36372.1| unnamed protein product [Mus musculus]
 gi|32880063|gb|AAP88862.1| eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
 gi|55716055|gb|AAH85859.1| Eukaryotic translation initiation factor 4A2 [Rattus norvegicus]
 gi|55733019|emb|CAH93195.1| hypothetical protein [Pongo abelii]
 gi|61359891|gb|AAX41782.1| eukaryotic translation initiation factor 4A isoform 2 [synthetic
           construct]
 gi|62969091|gb|AAH94422.1| Eukaryotic translation initiation factor 4A2 [Mus musculus]
 gi|74267868|gb|AAI03107.1| Eukaryotic translation initiation factor 4A, isoform 2 [Bos taurus]
 gi|85792276|gb|ABC84195.1| eukaryotic translation initiation factor 4A isoform 2 [Sus scrofa]
 gi|119598578|gb|EAW78172.1| eukaryotic translation initiation factor 4A, isoform 2, isoform
           CRA_a [Homo sapiens]
 gi|119598583|gb|EAW78177.1| eukaryotic translation initiation factor 4A, isoform 2, isoform
           CRA_a [Homo sapiens]
 gi|123981670|gb|ABM82664.1| eukaryotic translation initiation factor 4A, isoform 2 [synthetic
           construct]
 gi|123996477|gb|ABM85840.1| eukaryotic translation initiation factor 4A, isoform 2 [synthetic
           construct]
 gi|148665242|gb|EDK97658.1| eukaryotic translation initiation factor 4A2, isoform CRA_d [Mus
           musculus]
 gi|149019926|gb|EDL78074.1| eukaryotic translation initiation factor 4A2, isoform CRA_a [Rattus
           norvegicus]
 gi|296491283|gb|DAA33346.1| eukaryotic initiation factor 4A-II [Bos taurus]
 gi|307684696|dbj|BAJ20388.1| eukaryotic translation initiation factor 4A, isoform 2 [synthetic
           construct]
 gi|227239|prf||1617105C initiation factor 4AII
          Length = 407

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 74  IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 133

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 134 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 190

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK  T+  V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 191 RGFKDQIYEIFQKLNTSIQVVLLSAT-MP----------TDVLEVTKKFM-RDPIR---I 235

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 236 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHA 295

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 296 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 346


>gi|327262891|ref|XP_003216257.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like [Anolis
           carolinensis]
          Length = 1021

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 139/335 (41%), Gaps = 60/335 (17%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   LI + A +   G            + +I+AP   L  Q +   +K++  T 
Sbjct: 260 TGSGKTAAFLIPILAHMLRDGITATHFKEQQEPECIIVAPTRELINQIFLESRKFSYGTC 319

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQH 404
           +   +I G +   H    + +I  G  +I+  T     D      I   KL  +++DE  
Sbjct: 320 VRPVVIYGGIQMGH---TIHQIMQG-CNILCATPGRLLDIINRGKIGLTKLKYLVLDEAD 375

Query: 405 R-----FGVQQRLKLTQKATAP-----HVLLMTAT-PIPRTLVLTSLGDIDISKITEKPA 453
           R     FG   + KL      P       L+ +AT P     +      +D   +     
Sbjct: 376 RMLDMGFGPDMK-KLISSPGMPSKDQRQTLMFSATFPEEIQRLAGEFLKVDYLFVVVGQV 434

Query: 454 GR--KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           G     ++  I+ +N+ D+  + L+++ + GK+   +   +E KK+++F +       L 
Sbjct: 435 GGACSDVEQTILQVNQYDKREKLLEILNAIGKERTMVF--VETKKKADFIATF-----LC 487

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH- 570
           + +  + +I HG     ++E  +  F++G C +L+AT+V   G+D        IEN +H 
Sbjct: 488 QEYIPTTSI-HGDREQREREEALQCFRSGKCPVLVATSVAARGLD--------IENVQHV 538

Query: 571 --FGLAQ-----LHQLRGRVGRGEEISSCILLYHP 598
             F L       +H++ GR GR       I  + P
Sbjct: 539 INFDLPSAIDEYVHRI-GRTGRCGNTGKAISFFDP 572


>gi|323974344|gb|EGB69473.1| primosomal protein N [Escherichia coli TW10509]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH--RFGVQQRL 412
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H   +  Q+  
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQEGW 333

Query: 413 KLTQKATAPH--------VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +   +  A +        ++L +ATP   TL         + ++T +    +P
Sbjct: 334 RYHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARP 386


>gi|315042486|ref|XP_003170619.1| ATP-dependent RNA helicase eIF4A [Arthroderma gypseum CBS 118893]
 gi|311344408|gb|EFR03611.1| ATP-dependent RNA helicase eIF4A [Arthroderma gypseum CBS 118893]
          Length = 396

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 122/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    V+      QA+I+AP   LAQQ  + +        +   
Sbjct: 64  IAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSVDCH 123

Query: 354 IITGNMPQAHRRKALERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
              G        KAL+          G+ H +I    L  D I+ +  +L   DE    G
Sbjct: 124 ACIGGTNVRDDMKALQDGPQVVVGTPGRVHDMIQRRVLKTDHIKMF--VLDEADEMLSRG 181

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             +++    +   ++T   V+L++AT  P           D+ ++T K   R P++   I
Sbjct: 182 FTEQIYDIFQFLPQST--QVVLLSATMPP-----------DVLEVTTKFM-RDPVR---I 224

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      +K  W    + +  E+          N R  V+      + 
Sbjct: 225 LVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLQA 284

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 285 RDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335


>gi|330908257|gb|EGH36776.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Escherichia coli AA86]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|285017902|ref|YP_003375613.1| ATP-independent RNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283473120|emb|CBA15626.1| probable atp-independent rna helicase protein [Xanthomonas
           albilineans]
          Length = 458

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 123/287 (42%), Gaps = 34/287 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYT---QNTQI 350
           I+Q   GSGKT    + +   ++      QA+++ P   LA Q  + ++K      N ++
Sbjct: 43  IVQAPTGSGKTAAFGLGLLHKLDPALVRAQALVLCPTRELADQVGKQVRKLATGIANMKL 102

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +V  +TG MP A +  +LE  AH    +++GT    Q+  +   L L     +++DE  R
Sbjct: 103 VV--LTGGMPLAPQLASLE--AH-DPQVVVGTPGRIQELARKRVLHLGGVRTLVLDEADR 157

Query: 406 F---GVQQRLKLTQKATAPH--VLLMTATPIPRTL-VLTSLGDIDISKITEKPAGRKPIK 459
               G ++ ++        H   LL +AT  P T+  L      D ++IT   A   P  
Sbjct: 158 MLDMGFEEPIREIAGRCDKHRQSLLFSAT-FPETIRALARELLKDPTEITVAGAESAP-- 214

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--SNFRSVVERFNSLHEHFTSS 517
                   ID+    +     +   A  +     E      N R  V+   S  + F  S
Sbjct: 215 -------EIDQQFFEVDPSYRQKAVAGLLLRFAPESSVVFCNTRKEVDEVASSLQQFGFS 267

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +HG M   D++ V+  F N +C +L+A+ V   G+DV D + ++
Sbjct: 268 ALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLAAVL 314


>gi|256853014|ref|ZP_05558384.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256711473|gb|EEU26511.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
          Length = 449

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 147/345 (42%), Gaps = 39/345 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT+ QE  I  I     QK + + I Q   GSGKT   L+ +   V+      Q VI AP
Sbjct: 25  PTEVQEKLIPII-----QKGKSV-IGQSQTGSGKTHTFLLPLMDKVKPTIDEVQIVITAP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q Y+  ++  + +Q  + + +  +    +++ L ++ H Q H++IGT     D 
Sbjct: 79  SRELANQIYQEAQQLARFSQPEIRV-SNFVGGTDKQRQLNKLKHQQPHVVIGTPGRILDM 137

Query: 389 ----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
               +++ +     +VDE         L +   A    +    A  +P  L +       
Sbjct: 138 MNEQALKVHTAFAFVVDE-----ADMTLDMGFLAEVDQI----AGRLPEKLQMLVFSATI 188

Query: 445 ISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
             K+  +P  +K    P+   I P   I E I+   ++ ++GK +  I  Q+        
Sbjct: 189 PEKL--RPFLKKYLENPVIEHIKPKAVISETIDNW-LISTKGKNSNQIIYQLLTIGHPYL 245

Query: 500 ---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +  +R + + ++       +A IHG ++  +++ VM   +N   + ++AT +   
Sbjct: 246 AIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GID+   S +I     H     +H++ GR GR     + I LY P
Sbjct: 306 GIDIEGVSHVINAEVPHELDFFIHRV-GRTGRNGLNGTAITLYSP 349


>gi|224002607|ref|XP_002290975.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972751|gb|EED91082.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 681

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 137/317 (43%), Gaps = 51/317 (16%)

Query: 302 VGSGKTLVALIAMA---------AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            GSGKTL  ++ M          A  E G   +I+AP   LA Q +   K +T++  +  
Sbjct: 106 TGSGKTLAFVLPMLRHILDQPPLAPGETGPIGLILAPARELAYQIHVVCKGFTKHLGLKS 165

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD--SIQYYKLI------LVIVDEQH 404
             + G    A +   L+R      HI+  T     D  ++Q  KLI      +V +DE  
Sbjct: 166 TAVYGGAGVAEQIGDLKR----GTHILCATPGRLIDILTMQSGKLISLQRVSMVCLDEAD 221

Query: 405 R---FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           R    G + ++     A  P    +L +AT  P+           + ++ +K   R P++
Sbjct: 222 RAFDMGFESQISAILSAVRPDRQTVLFSAT-FPKA----------VEQLAKKSL-RAPLE 269

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHF 514
            ++   +   + +++   V+ E  K   +   + +  +   + +V     E+ +SL E  
Sbjct: 270 IIVGGRSVASDSVDQYAEVVEEEDKFLRLLQILGDHADDQKKVIVFVGRQEQADSLFEQL 329

Query: 515 T----SSIAIIHGRMSDIDKESVMDSFK--NGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           T    SS++I HG M   D++S M  FK  +    +L+AT+V   G+DV     ++   +
Sbjct: 330 TRCGYSSLSI-HGGMDQEDRDSNMSDFKRVDSGVNVLVATSVAGRGLDVPSCGCVVNYAS 388

Query: 569 EHFGLAQLHQLRGRVGR 585
            +     +H++ GR GR
Sbjct: 389 PNHLEDYVHRV-GRTGR 404


>gi|218561002|ref|YP_002393915.1| primosome assembly protein PriA [Escherichia coli S88]
 gi|218367771|emb|CAR05565.1| Primosome factor n' (replication factor Y) [Escherichia coli S88]
 gi|294490227|gb|ADE88983.1| primosomal protein N' [Escherichia coli IHE3034]
 gi|307629009|gb|ADN73313.1| primosome assembly protein PriA [Escherichia coli UM146]
 gi|323949425|gb|EGB45314.1| primosomal protein N [Escherichia coli H252]
 gi|323954294|gb|EGB50079.1| primosomal protein N [Escherichia coli H263]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|260827517|ref|XP_002608711.1| hypothetical protein BRAFLDRAFT_120585 [Branchiostoma floridae]
 gi|229294063|gb|EEN64721.1| hypothetical protein BRAFLDRAFT_120585 [Branchiostoma floridae]
          Length = 392

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 9/88 (10%)

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           + F +S+A  H  MS   K  V+  FK+   ++++AT    +GID+ D S +++     +
Sbjct: 135 DRFKASVAYFHSSMSPDLKAKVLKRFKDAEVRVVVATVAFGMGIDIPDISCVVV-----Y 189

Query: 572 GL----AQLHQLRGRVGRGEEISSCILL 595
           GL    +QL+Q  GR GR  E ++ ++ 
Sbjct: 190 GLPKSMSQLYQEIGRAGRSGEPATAVVF 217


>gi|170769654|ref|ZP_02904107.1| primosomal protein N' [Escherichia albertii TW07627]
 gi|170121462|gb|EDS90393.1| primosomal protein N' [Escherichia albertii TW07627]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|77461469|ref|YP_350976.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf0-1]
 gi|77385472|gb|ABA76985.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf0-1]
          Length = 478

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 138/331 (41%), Gaps = 56/331 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I Q   GSGKT    I +   +     G QA+++ P   LA Q  + I++  +    I V
Sbjct: 64  IAQAKTGSGKTAAFGIGLLNPINPRYFGCQALVICPTRELADQVAKEIRRLARAEDNIKV 123

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  ++   L+L     +I+DE  R  
Sbjct: 124 LTLCGGVSFGPQIGSLE---HG-AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRM- 178

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++   + I ++  K   R P +TV     
Sbjct: 179 ------LDMGFYDAIEDIIEQTPARRQTLLFSATYPVGIKQLASKFM-RDP-QTVKAEAF 230

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH--------------- 511
             D  IE         ++ Y I P   E++ S    V+  F                   
Sbjct: 231 HDDTQIE---------QRFYEISP---EERMSAVTKVLHHFRPASTVAFCFTKQQVQETV 278

Query: 512 EHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +H TS   S   +HG +   D++ V+  F N +  +L+AT V   G+D +DA  ++I N 
Sbjct: 279 DHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVI-NV 336

Query: 569 EHFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
           E    +++H  R GR GR  E    + L  P
Sbjct: 337 ELARDSEIHIHRVGRTGRAGEKGIAVSLVAP 367


>gi|116181632|ref|XP_001220665.1| hypothetical protein CHGG_01444 [Chaetomium globosum CBS 148.51]
 gi|118597484|sp|Q2HEB0|PRP28_CHAGB RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|88185741|gb|EAQ93209.1| hypothetical protein CHGG_01444 [Chaetomium globosum CBS 148.51]
          Length = 705

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 143/372 (38%), Gaps = 68/372 (18%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-- 320
           +I+ N+ +  PT  Q +AI      ++Q+ R L I     GSGKT   L+ +   +    
Sbjct: 282 EIVENVGYDEPTPIQRAAIP-----IAQQARDL-IGVAVTGSGKTAAFLLPLLVYISELP 335

Query: 321 ---------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G  A+I+AP   L QQ     +K+       V  I G      +  AL   
Sbjct: 336 PLTEFNKNDGPYALILAPTRELVQQIETEARKFAGPLGFTVVSIVGGHSLEEQAFAL--- 392

Query: 372 AHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
               A II+ T     D ++     + +   +I+DE  R        + Q    P   ++
Sbjct: 393 -RNGAEIIVATPGRLVDCLERRLLVFSQCCYIIMDEADRM-------IDQGFEEPLTKIL 444

Query: 427 TATPI----PRT-------LVLTSLGDID---------------ISKITEKPAGRKPIKT 460
            A P+    P T       L+   LG  D               + KI +K   R  I T
Sbjct: 445 DALPVANEKPDTEDAENSQLMSRYLGGKDRYRQTMMYTATMPPLVEKIAKKYLRRPAIVT 504

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEH 513
           +      +D V +R++ V  E K+   +   +   +         N +   E      + 
Sbjct: 505 IGNAGEAVDTVEQRVEFVSGEDKRKRRLQEILNSGQFKPPVIVFVNIKRNCEMVAKDIKS 564

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           +  S   +HG  +   +E+ + S +NG   +L+AT +   GIDV D S+++  N      
Sbjct: 565 WGYSTVTLHGSKTQEQREASLASVRNGQANILVATDLAGRGIDVADVSLVVNFNMPSSIE 624

Query: 574 AQLHQLRGRVGR 585
           A  H++ GR GR
Sbjct: 625 AYTHRI-GRTGR 635


>gi|187732612|ref|YP_001882631.1| primosome assembly protein PriA [Shigella boydii CDC 3083-94]
 gi|187429604|gb|ACD08878.1| primosomal protein N' [Shigella boydii CDC 3083-94]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|332670437|ref|YP_004453445.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332339475|gb|AEE46058.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 596

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 151/375 (40%), Gaps = 87/375 (23%)

Query: 251 IGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           +G+P  +E  +A     ++ F +P+  Q  A+  +L        ++ + Q   G+GKT  
Sbjct: 30  LGLPAPLERAVA-----DLGFVTPSAIQSQAVPALLA----GRDIVGVAQ--TGTGKTAA 78

Query: 310 ALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKY-TQNTQIIVEIITGNMPQAHRR 365
             + + AAV+AG    QA+++ P   LA Q  + I  + T    + V  + G  P   ++
Sbjct: 79  FGLPLLAAVDAGTAGVQAIVLTPTRELAMQVADAITSFATHLPGLAVVAVYGGSPFLPQQ 138

Query: 366 KALERIAHGQAHIIIGTHA----------LFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +A+ R     A +++GT            L  D ++Y  L+L   DE  R G  + +   
Sbjct: 139 RAIAR----GAQVVVGTPGRVLDHLDRGTLVLDQVRY--LVLDEADEMLRMGFAEDVDR- 191

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE----- 470
                    ++ +TP  R + L S                    T+  PI R+ E     
Sbjct: 192 ---------VLASTPDRRQVALFS-------------------ATMPAPIRRVAEQHLHQ 223

Query: 471 ----VIERLKVVLSEGKKAYWICP---------QIEEKKESNFRSVVERFNSLHEHFTS- 516
                + R    ++  ++ Y + P         ++    +++   V  R     E   S 
Sbjct: 224 PVEITVARQSSTVTTVRQTYAVVPYRHKIGALGRVLAVTDADATIVFVRTRGAAEEVGSA 283

Query: 517 ------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 S A I G ++  D+E ++D  ++G   +L+AT V   G+DV    +++  +   
Sbjct: 284 LVERGISAAHISGDVAQSDREKIVDRLRSGALDVLVATDVAARGLDVERIGLVVNFDVPR 343

Query: 571 FGLAQLHQLRGRVGR 585
                +H++ GR GR
Sbjct: 344 EAETYVHRI-GRTGR 357


>gi|320175378|gb|EFW50481.1| Helicase PriA essential for oriC/DnaA-independent DNA replication
           [Shigella dysenteriae CDC 74-1112]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|315298412|gb|EFU57667.1| primosomal protein [Escherichia coli MS 16-3]
 gi|323189643|gb|EFZ74922.1| primosomal protein N' [Escherichia coli RN587/1]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|223649022|gb|ACN11269.1| Probable ATP-dependent RNA helicase DDX5 [Salmo salar]
          Length = 614

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 140/352 (39%), Gaps = 57/352 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +   +Y 
Sbjct: 134 MVGIAQ--TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYG 191

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK-----LILVIV 400
           + +++    + G  P+  + + L+R       I I T     D ++  K        +++
Sbjct: 192 RASRLKSVCVYGGAPKGPQLRDLDR----GVEICIATPGRLIDFLEAGKTNMRRCTYLVL 247

Query: 401 DEQHR-----FGVQ----------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R     F  Q           R  L   AT P  +   A    +  V  ++G + +
Sbjct: 248 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQINVGALQL 307

Query: 446 SKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           S      A    ++ V +  +  + D+++  L+ ++SE           +E K   F   
Sbjct: 308 S------ANHNILQIVDVCNDGEKEDKLLRLLEEIMSE-----------KENKTIIFTET 350

Query: 504 VERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             R + +             IHG  S  +++ V++ FK G   +LIAT V   G+DV D 
Sbjct: 351 KRRCDEITRRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDV 410

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             +I  +  +     +H++ GR  R ++  +    + P   + +   ++VL+
Sbjct: 411 KFVINFDYPNNSEDYIHRI-GRTARSQKTGTAYTFFTPNNMRQASDLVAVLR 461


>gi|218532241|ref|YP_002423057.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218524544|gb|ACK85129.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 519

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 142/353 (40%), Gaps = 42/353 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + +  K+ Q +       PT  Q  AI  +L     +  +L I Q   G+GKT    + M
Sbjct: 6   LGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLA----RRDVLGIAQ--TGTGKTAAFTLPM 59

Query: 315 AAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
              +E G       + +I+ P   LA Q  E  ++Y  N ++ V +I G +  A +   L
Sbjct: 60  LTMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKL 119

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
            R       ++I T     D  +  KL+L     +++DE  R        +      P +
Sbjct: 120 TR----GTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADR--------MLDMGFIPDI 167

Query: 424 -LLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             ++   P  R TL  ++    +I ++ +          V  P +    + +RL    +E
Sbjct: 168 ERIVKMVPFTRQTLFFSATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAE 227

Query: 482 GKKAYWICPQ-IEEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           G +   +    I    E        +  R V +   SL  H  ++ A+ HG M    + +
Sbjct: 228 GHEKRKVLRHLIRSASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAAL-HGDMDQRARMA 286

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            +D F++G   LL+A+ V   G+D+   S +   +  H     +H++ GR GR
Sbjct: 287 ALDGFRSGEVPLLVASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRI-GRTGR 338


>gi|149189181|ref|ZP_01867468.1| primosome assembly protein PriA [Vibrio shilonii AK1]
 gi|148836935|gb|EDL53885.1| primosome assembly protein PriA [Vibrio shilonii AK1]
          Length = 744

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 7/145 (4%)

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQN 347
           SQ      +L+G  GSGKT V L  +A  +E G QA+++ P IG+  Q    F K++   
Sbjct: 224 SQTEFGCYLLEGVTGSGKTEVYLQMIAPVLERGQQALVLVPEIGLTPQTINRFKKRFN-- 281

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + +E+I   +    R  A        A I+IGT +       +  L ++IVDE+H   
Sbjct: 282 --VPIEVIHSGLNDTERLNAWLSARDKVAGIVIGTRSALLTP--FADLGIIIVDEEHDTS 337

Query: 408 VQQRLKLTQKATAPHVLLMTATPIP 432
            +Q+  L   A    V+      IP
Sbjct: 338 YKQQDSLRYHARDVAVMRANKEQIP 362


>gi|121700863|ref|XP_001268696.1| DEAD box RNA helicase HelA, putative [Aspergillus clavatus NRRL 1]
 gi|119396839|gb|EAW07270.1| DEAD box RNA helicase HelA, putative [Aspergillus clavatus NRRL 1]
          Length = 663

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 89/396 (22%), Positives = 154/396 (38%), Gaps = 97/396 (24%)

Query: 281 IKDILQDMS-------QKNRMLRILQGD-------VGSGKTLVAL------IAMAAAVEA 320
           I+ I++DM        Q   +  ILQGD        G+GKTL  L      I    +++ 
Sbjct: 91  IRAIVKDMKIQTMTDVQSQTIQEILQGDDVLAQAKTGTGKTLAFLTPVLQNIMKDPSIQQ 150

Query: 321 GG------------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           GG            +A+I++P   LA+Q  +  ++   +T ++V+   G     H+R+ L
Sbjct: 151 GGSRRSSHASASDIRALIISPTRELAEQIAKEARRLAAHTNVVVQTAVGG---THKREGL 207

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYK-------LILVIVDEQHRF---GVQ------QRL 412
            RI     H+++GT    +D +  ++       L  +++DE  R    G        QRL
Sbjct: 208 RRIQREGCHLLVGTPGRLKDILSDHRSGVTAPNLSTLVLDEADRLLDDGFSEDIMEIQRL 267

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
                      L+ +AT +P+ +       + +  +T KP   K IKTV     R +EV 
Sbjct: 268 LPDPMKVERQTLMFSAT-VPKEV-------MKMVHLTMKP-DFKFIKTV-----RDNEVP 313

Query: 473 ERLK-----VVLSEGKKAY---------WICPQIEEKKESNFRSVV------------ER 506
             L      VVL   + A+         +I    E+     F+++V            E 
Sbjct: 314 THLTVPQKYVVLKGYENAFPALLEYVTRYIEASNEDPTRRPFKAIVYFNSTVQTNLAFET 373

Query: 507 FNSLHEHFTSSIAI-----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           F  + E   S +       IH +++   +    D F+     +L ++ V   G+D  D +
Sbjct: 374 FRQIFEDRRSQLRDVRLFEIHSQLTQARRTRSSDHFRASRSAILFSSDVTARGMDFPDVT 433

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +   +        +H+L GR  R  +     L  H
Sbjct: 434 HVFQFSLPKDRATYIHRL-GRTARANKTGEGWLFLH 468


>gi|254195234|ref|ZP_04901662.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei S13]
 gi|169651981|gb|EDS84674.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei S13]
          Length = 465

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 135/308 (43%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++      QA+++ P   LA Q  + I++  +  + + V
Sbjct: 49  IAQAKTGSGKTAAFSLALLARLDTRRFDVQALVLCPTRELADQVAQEIRRLARAEENVKV 108

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHII+GT     D +    L L     +++DE  R  
Sbjct: 109 LTLCGGTPMRPQTQSLE---HG-AHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRML 164

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    K      +     P  +TL+ ++     I+K++++   R P K V +    
Sbjct: 165 DMGFFDDIAK------VARQCPPTRQTLLFSATYPDGIAKLSQQFL-RHP-KRVKLEERH 216

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            D  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 217 DDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 276

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 277 -HGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVYVHRI- 334

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 335 GRTGRADQ 342


>gi|30064772|ref|NP_838943.1| primosome assembly protein PriA [Shigella flexneri 2a str. 2457T]
 gi|56480486|ref|NP_709739.2| primosome assembly protein PriA [Shigella flexneri 2a str. 301]
 gi|110807796|ref|YP_691316.1| primosome assembly protein PriA [Shigella flexneri 5 str. 8401]
 gi|30043032|gb|AAP18754.1| primosomal protein N (factor Y), putative helicase [Shigella
           flexneri 2a str. 2457T]
 gi|56384037|gb|AAN45446.2| primosomal protein N (factor Y), putative helicase [Shigella
           flexneri 2a str. 301]
 gi|110617344|gb|ABF06011.1| primosome assembly protein PriA [Shigella flexneri 5 str. 8401]
 gi|313648822|gb|EFS13261.1| primosomal protein N' [Shigella flexneri 2a str. 2457T]
 gi|332751574|gb|EGJ81973.1| primosomal protein N' [Shigella flexneri 4343-70]
 gi|332751846|gb|EGJ82243.1| primosomal protein N' [Shigella flexneri K-671]
 gi|332752555|gb|EGJ82941.1| primosomal protein N' [Shigella flexneri 2747-71]
 gi|332764525|gb|EGJ94757.1| primosomal protein N' [Shigella flexneri 2930-71]
 gi|333013890|gb|EGK33252.1| primosomal protein N' [Shigella flexneri K-304]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|16131773|ref|NP_418370.1| Primosome factor n' (replication factor Y) [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89110094|ref|AP_003874.1| primosome factor n' [Escherichia coli str. K-12 substr. W3110]
 gi|170083405|ref|YP_001732725.1| primosome factor n' (replication factor Y) [Escherichia coli str.
           K-12 substr. DH10B]
 gi|194438280|ref|ZP_03070371.1| primosomal protein N' [Escherichia coli 101-1]
 gi|238903001|ref|YP_002928797.1| Primosome factor n' (replication factor Y) [Escherichia coli
           BW2952]
 gi|253775426|ref|YP_003038257.1| primosome assembly protein PriA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163885|ref|YP_003046993.1| primosome assembly protein PriA [Escherichia coli B str. REL606]
 gi|256026027|ref|ZP_05439892.1| primosome assembly protein PriA [Escherichia sp. 4_1_40B]
 gi|300931623|ref|ZP_07146933.1| primosomal protein [Escherichia coli MS 187-1]
 gi|301024064|ref|ZP_07187779.1| primosomal protein [Escherichia coli MS 196-1]
 gi|301645126|ref|ZP_07245084.1| primosomal protein [Escherichia coli MS 146-1]
 gi|307140633|ref|ZP_07499989.1| primosome assembly protein PriA [Escherichia coli H736]
 gi|33112657|sp|P17888|PRIA_ECOLI RecName: Full=Primosomal protein N'; AltName: Full=ATP-dependent
           helicase priA; AltName: Full=Replication factor Y
 gi|305038|gb|AAB03067.1| primosomal protein replication factor [Escherichia coli str. K-12
           substr. MG1655]
 gi|1790370|gb|AAC76917.1| Primosome factor n' (replication factor Y) [Escherichia coli str.
           K-12 substr. MG1655]
 gi|85676125|dbj|BAE77375.1| primosome factor n' [Escherichia coli str. K12 substr. W3110]
 gi|169891240|gb|ACB04947.1| Primosome factor n' (replication factor Y) [Escherichia coli str.
           K-12 substr. DH10B]
 gi|194422717|gb|EDX38713.1| primosomal protein N' [Escherichia coli 101-1]
 gi|238863277|gb|ACR65275.1| Primosome factor n' (replication factor Y) [Escherichia coli
           BW2952]
 gi|242379471|emb|CAQ34286.1| primosome factor N', subunit of primosome [Escherichia coli
           BL21(DE3)]
 gi|253326470|gb|ACT31072.1| primosomal protein N' [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975786|gb|ACT41457.1| primosome assembly protein PriA [Escherichia coli B str. REL606]
 gi|253979943|gb|ACT45613.1| primosome assembly protein PriA [Escherichia coli BL21(DE3)]
 gi|260451228|gb|ACX41650.1| primosomal protein N' [Escherichia coli DH1]
 gi|299880568|gb|EFI88779.1| primosomal protein [Escherichia coli MS 196-1]
 gi|300460587|gb|EFK24080.1| primosomal protein [Escherichia coli MS 187-1]
 gi|301076553|gb|EFK91359.1| primosomal protein [Escherichia coli MS 146-1]
 gi|315138501|dbj|BAJ45660.1| primosome factor n [Escherichia coli DH1]
 gi|315617731|gb|EFU98336.1| primosomal protein N' [Escherichia coli 3431]
 gi|323939017|gb|EGB35235.1| primosomal protein N [Escherichia coli E482]
 gi|323959296|gb|EGB54957.1| primosomal protein N [Escherichia coli H489]
 gi|323969687|gb|EGB64971.1| primosomal protein N [Escherichia coli TA007]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|260574445|ref|ZP_05842449.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
 gi|259023341|gb|EEW26633.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
          Length = 829

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 132/335 (39%), Gaps = 47/335 (14%)

Query: 297 ILQGDV-----------GSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQ 336
           +L GDV           GSGKT+   IA+A  +  G           A+I+AP   LA Q
Sbjct: 29  VLSGDVTGRDLLVSAQTGSGKTVAFGIAIADELLRGADRLLFADTPMALIIAPTRELALQ 88

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL- 395
               +      T  I+    G M     ++AL+R     AHI++GT    +D I+   L 
Sbjct: 89  VARELDWLYAETGAIIATCVGGMDYRTEKRALDR----GAHIVVGTPGRLRDHIERRSLD 144

Query: 396 -------ILVIVDEQHRFGVQQRLK-LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
                  +L   DE    G ++ L+ + Q A A    LM +  +P+ +        +++K
Sbjct: 145 LSGLRAAVLDEADEMLDLGFREDLEFILQAAPAERRTLMFSATVPKAIA-------ELAK 197

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSV 503
             +  A R  ++T       +D     L V   + + A +   +  E + +      R  
Sbjct: 198 DFQNNALR--LQTAGEARQHVDIEYRALNVSTRDREHAIFNLLRFYEARSAIVFCKTRVA 255

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V    +   +    +  + G +S  ++   + S ++G  ++ IAT V   GID+    ++
Sbjct: 256 VNHLLARMGNRGFQVVALSGELSQQERTHALQSLRDGRARVCIATDVAARGIDLPGLDLV 315

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           I  +        LH+  GR GR        L+  P
Sbjct: 316 IHADLPSNSEVLLHR-SGRTGRAGSKGVSALIVTP 349


>gi|213511116|ref|NP_001134430.1| eukaryotic initiation factor 4A-III [Salmo salar]
 gi|251764756|sp|B5DG42|IF4A3_SALSA RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|197631985|gb|ACH70716.1| eukaryotic translation initiation factor 4A isoform 3 [Salmo salar]
 gi|209733202|gb|ACI67470.1| Eukaryotic initiation factor 4A-III [Salmo salar]
          Length = 406

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 144/340 (42%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    +++   ++      QA+I+AP
Sbjct: 56  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAP 109

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +      G     +  + + ++ +GQ H++ GT     D 
Sbjct: 110 TRELAGQIQKVLLALGDYMNVQCHSCIGG---TNVGEDIRKLDYGQ-HVVAGTPGRVFDM 165

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++    +   P   V L++AT     L +T+
Sbjct: 166 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTN 225

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGKKA 485
               D  +I  K      + IK   + + R +   + L             +  +  +K 
Sbjct: 226 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 285

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  ++L
Sbjct: 286 DWL---TEKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGASRVL 326

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 327 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 365


>gi|332345932|gb|AEE59266.1| primosomal protein N' PriA [Escherichia coli UMNK88]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|282599579|ref|ZP_05971084.2| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
 gi|282568585|gb|EFB74120.1| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
          Length = 457

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 142/344 (41%), Gaps = 38/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVG--SGKTLVALIAMAAAVEAGG-----QA 324
           SPT  Q+ AI  +L      N +L   Q   G  +G TL  L  +  A  +G      +A
Sbjct: 31  SPTPIQQQAIPAVLAG----NDLLASAQTGTGKTAGFTLPILQKLVDAPRSGNNRRPIRA 86

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHIII 380
           +I+ P   LA Q  E +K+Y+++  I   ++ G +   PQ  + R  ++ +      ++ 
Sbjct: 87  LILTPTRELAAQVAENVKEYSRHLNIRSFVVFGGVSINPQMMKLRSGVDVLIATPGRLLD 146

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR---TLVL 437
             H   Q+++   ++ ++++DE  R      +         H +    T +P+    L+ 
Sbjct: 147 LEH---QNAVDLSQVEILVLDEADRMLDMGFI---------HDIRRVITKLPKKRQNLLF 194

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    DI ++  K     P+   + P N   E + +   ++ + +KA  +   I  +  
Sbjct: 195 SATFSDDIKQLASKLLN-NPVSIEVAPRNSASEQVTQYVHLVDKKRKAELLSFMIGRENW 253

Query: 498 SN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F       N L EH        A IHG  S   +   +  FK+G  ++L+AT + 
Sbjct: 254 QQVLVFTRTKHGANRLAEHLNKDGIKSAAIHGNKSQGARTRALADFKSGDIRVLVATDIA 313

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             G+D+     ++     +     +H++ GR GR E     I L
Sbjct: 314 ARGLDIEQLPHVVNFELPNVAEDYVHRI-GRTGRAEATGQAISL 356


>gi|215489266|ref|YP_002331697.1| primosome assembly protein PriA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|306813801|ref|ZP_07447977.1| primosome assembly protein PriA [Escherichia coli NC101]
 gi|312969312|ref|ZP_07783514.1| primosomal protein N' [Escherichia coli 2362-75]
 gi|215267338|emb|CAS11787.1| Primosome factor n' (replication factor Y) [Escherichia coli
           O127:H6 str. E2348/69]
 gi|305852799|gb|EFM53246.1| primosome assembly protein PriA [Escherichia coli NC101]
 gi|312285859|gb|EFR13777.1| primosomal protein N' [Escherichia coli 2362-75]
 gi|320196801|gb|EFW71423.1| Helicase PriA essential for oriC/DnaA-independent DNA replication
           [Escherichia coli WV_060327]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|56552313|ref|YP_163152.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241761630|ref|ZP_04759717.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753995|ref|YP_003226888.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|56543887|gb|AAV90041.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373938|gb|EER63471.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258553358|gb|ACV76304.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 458

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 145/349 (41%), Gaps = 56/349 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT----LVALIAMAAAVEA----GGQA 324
           PT  Q  AI  +L+       +  I Q   G+GKT    L ++  +A   +A    G + 
Sbjct: 29  PTPIQAQAIPHLLEGKD----LCGIAQ--TGTGKTAAFALPSIHYLATNPQARPQRGCRM 82

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I++P   LA Q       YT++ ++ V  + G +P   + + L+R       I++ T  
Sbjct: 83  LILSPTRELASQIARACNDYTRHLRMSVNAVFGGVPIGRQMRMLDR----GTDILVATPG 138

Query: 385 LFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLTQKATAPH--VLLMTATPIPRT 434
              D I    L+L      ++DE  +    G    L+   K    +   L  +AT +P+T
Sbjct: 139 RLLDLIDQRALVLKDVEVFVLDEADQMLDLGFIHALRRIDKLLPKNRQTLFFSAT-MPKT 197

Query: 435 LVLTS---LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           +   S   L D              P+   + P +   E +E+  + +++ +K   +   
Sbjct: 198 IQELSSQFLSD--------------PVTVSVAPQSSTAERVEQFGIFVNQSEKQALLTIT 243

Query: 492 IEEKKESNFRSVVER----FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKL 544
           ++     +   V  R     + +  H  ++    A IHG  S   +E  +++F+NG  K+
Sbjct: 244 LKNTPGLDRALVFTRTKHGADRVVRHLEAAGLPAAAIHGNKSQPQRERALNAFRNGRLKI 303

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL--RGRVGR-GEEIS 590
           L+AT +   GIDV   S +      +     +H++    R GR G+ IS
Sbjct: 304 LVATDIAARGIDVPGVSHVFNYELPNVAEQYVHRIGRTARAGRDGQAIS 352


>gi|89893419|ref|YP_516906.1| hypothetical protein DSY0673 [Desulfitobacterium hafniense Y51]
 gi|89332867|dbj|BAE82462.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 855

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 133/323 (41%), Gaps = 43/323 (13%)

Query: 298 LQGDVGSGKTL-VALIAMAAAVE-AGGQAVIMAPIGILAQQHYEFIKKYTQNTQI---IV 352
           L     SGK+L     AM   +  +  +A+ + PI  LA      +K    +  +   IV
Sbjct: 69  LCTSTASGKSLGFCYPAMQEILNNSNARALFVYPIKALANDQIAKLKSLATDLALKPDIV 128

Query: 353 EIITGNMPQAHRRKALE--RIAHGQAHIIIGTHALFQDSIQYYK----LILVIVDEQHRF 406
               G++    R +ALE  RI      ++  T     D   Y +    L LVI+DE H +
Sbjct: 129 RKFDGDVKATDRVEALEKSRILVVTPDVLHTTLLRLNDEPLYSRFFENLSLVILDECHTY 188

Query: 407 G---------VQQRLK--LTQKATAPHVLLMTAT---PIPRTLVLTSLGDIDISKITEKP 452
                     V  RL+    +K + P  ++ +AT   P      LT + DI I  I E+ 
Sbjct: 189 SGVFGSNMAYVLSRLRQVCQKKGSNPRFMMSSATVGNPQEHLRQLTGIEDITI--IDERF 246

Query: 453 AGRKPIKT---VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            G    +    ++ P   ++     L   L +    + +  Q  ++ E     +VE F  
Sbjct: 247 NGSPQFEREFFMVQPTRYLEGYTLDLMGELIQQNTRFLVFGQSRQQIER----LVESFRL 302

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            +  + S +       +  +++ + +SF+ G    L+AT+ +E+G+D+ + S+ II    
Sbjct: 303 KYPKYRSKVEPYRAGFTPTERQQIENSFRKGELVGLVATSALELGVDLPNLSVCII---- 358

Query: 570 HFGL----AQLHQLRGRVGRGEE 588
             GL    +   Q  GR+GR  E
Sbjct: 359 -LGLPSTKSSFWQQSGRIGRSNE 380


>gi|28378315|ref|NP_785207.1| primosomal protein N' [Lactobacillus plantarum WCFS1]
 gi|28271150|emb|CAD64055.1| primosomal protein N' [Lactobacillus plantarum WCFS1]
          Length = 805

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+ A+  I Q + Q      +L+G  GSGKT V L +MAAA+  G  A+++ P   L  Q
Sbjct: 273 QQVAVDQITQAVDQAATTTFLLEGVTGSGKTEVYLQSMAAALVQGKTALMLVPEISLTPQ 332

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
             + +K         V ++   +    +     RI  G+A +++G  +     ++   L 
Sbjct: 333 MVQRVKGRFGKA---VAVLHSGLSSGEKYDEWRRIQRGEAQVVVGARSAVFAPLK--NLG 387

Query: 397 LVIVDEQHRFGVQQ 410
           L+++DE+H    +Q
Sbjct: 388 LIVMDEEHESTYKQ 401


>gi|308322209|gb|ADO28242.1| eukaryotic initiation factor 4a-iii [Ictalurus furcatus]
          Length = 406

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 147/342 (42%), Gaps = 61/342 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    +++   ++      QA+I+AP
Sbjct: 56  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAP 109

Query: 330 IGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
              LA Q  + +       N Q    I   N+ +  R+     + +GQ H++ GT     
Sbjct: 110 TRELAGQIQKVLLALGDFMNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRVF 163

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVL 437
           D I+   L        +L   DE    G ++++    +   P   V+L++AT     L +
Sbjct: 164 DMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEM 223

Query: 438 TSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGK 483
           T+    D  +I  K      + IK   + + R +   + L             +  +  +
Sbjct: 224 TNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKR 283

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  +
Sbjct: 284 KVDWL---TEKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGASR 324

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 325 VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 365


>gi|300919133|ref|ZP_07135670.1| primosomal protein [Escherichia coli MS 115-1]
 gi|300413767|gb|EFJ97077.1| primosomal protein [Escherichia coli MS 115-1]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|326318693|ref|YP_004236365.1| ATP-dependent DNA helicase, RecQ family [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375529|gb|ADX47798.1| ATP-dependent DNA helicase, RecQ family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 623

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             E  ++L      S  + HGRM   ++    D F  G  ++++AT    +GID  D   
Sbjct: 257 AAEEVHALLAGAGESAGLYHGRMPAAERGEAQDRFMAGDLRVMVATNAFGLGIDKQDVRF 316

Query: 563 IIIENAEHF----GLAQLHQLRGRVGRGEEISSCILLY 596
           ++     H+    GL   +Q  GR GR  + + C LL+
Sbjct: 317 VV-----HYQMPGGLDAYYQESGRAGRDGQPAECTLLF 349


>gi|239994839|ref|ZP_04715363.1| primosome assembly protein PriA [Alteromonas macleodii ATCC 27126]
          Length = 729

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 21/196 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P   Q  AI  +  +  Q N  + +L+G  GSGKT V L A+   +  G Q +I+ P IG
Sbjct: 199 PDTEQSVAIAAL--NRQQGNFAVSLLEGVTGSGKTEVYLQAIEPLLRDGKQVLILVPEIG 256

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSI 390
           +  Q    F K++     I V ++   +    R +  +R   G+  IIIGT  A+F    
Sbjct: 257 LTPQTVSRFEKRFG----IAVGVLHSQLSDKERLQVWQRAKAGELGIIIGTRSAIF---T 309

Query: 391 QYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             +   ++IVDE+H          R+  +    +  K     +LL +ATP   TL     
Sbjct: 310 PLHNPGMLIVDEEHDESFKQQDGLRYHARDLAAMRAKQHNIPLLLGSATPALETLNNALS 369

Query: 441 GDIDISKITEKPAGRK 456
           G     ++T++  G K
Sbjct: 370 GRYAHLQLTKRAGGAK 385


>gi|33598402|ref|NP_886045.1| ATP-dependent RNA helicase DbpA [Bordetella parapertussis 12822]
 gi|33574531|emb|CAE39177.1| probable ATP-dependent RNA helicase [Bordetella parapertussis]
          Length = 462

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 139/320 (43%), Gaps = 34/320 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + +++  +   N ++
Sbjct: 45  IAQAKTGSGKTAAFGLGVLQNLDVNRLAPQALVLCPTRELADQVAQELRRLARLIPNVKV 104

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR 405
           +   + G    A  R   E +A G  H+++GT    QD     S+    L  +++DE  R
Sbjct: 105 LT--LCGG---AAARPQAESLARG-THLVVGTPGRIQDHLARGSLDLSTLNTLVLDEADR 158

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
             V         A A H       P  R TL+ ++    +I K++ +   R P + + + 
Sbjct: 159 M-VDMGFYDDIAAIASHC------PARRQTLLFSATYPDNIRKLSARFL-RNPAE-IKVE 209

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SI 518
                  IE+L   + EG++   +   +   + ++   F +   R + L E   +   S 
Sbjct: 210 AQHDASRIEQLFFEIDEGQRLDAVAALLAHFRPASTLAFCNTKIRSHDLVERLRAQGISA 269

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             ++G +   +++ ++  F N +C +L+AT V   G+D+ +   +I  +        +H+
Sbjct: 270 EALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVINVDVTKDTEVHVHR 329

Query: 579 LRGRVGRGEEISSCILLYHP 598
           + GR GRG++    + L  P
Sbjct: 330 I-GRSGRGDQKGLALSLCSP 348


>gi|127511313|ref|YP_001092510.1| primosomal protein N' [Shewanella loihica PV-4]
 gi|126636608|gb|ABO22251.1| primosomal protein N' [Shewanella loihica PV-4]
          Length = 731

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 19/158 (12%)

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNT 348
           Q+     +L+G  GSGKT V L  +   ++ G QA+I+ P IG+  Q     I ++ +  
Sbjct: 216 QQGYHCTLLEGITGSGKTEVYLALLETVLKQGKQALILVPEIGLTPQT----ISRFKRRF 271

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
           ++ V +I   +    R  A      G+A IIIGT +     ++Y  +I  I+DE+H    
Sbjct: 272 KVQVAVIHSGLTDNQRLSAWRLARSGEAAIIIGTRSALFTPMRYPGII--ILDEEHDASF 329

Query: 409 QQRLKLTQKA-----------TAPHVLLMTATPIPRTL 435
           +Q+  +   A           + P VLL +ATP   TL
Sbjct: 330 KQQEGIGYHARDLAVMRGHLESIP-VLLGSATPSLETL 366


>gi|110644271|ref|YP_672001.1| primosome assembly protein PriA [Escherichia coli 536]
 gi|191172717|ref|ZP_03034255.1| primosomal protein N' [Escherichia coli F11]
 gi|300986112|ref|ZP_07177726.1| primosomal protein [Escherichia coli MS 200-1]
 gi|110345863|gb|ABG72100.1| primosomal protein N' [Escherichia coli 536]
 gi|190907021|gb|EDV66622.1| primosomal protein N' [Escherichia coli F11]
 gi|300306420|gb|EFJ60940.1| primosomal protein [Escherichia coli MS 200-1]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|332215079|ref|XP_003256667.1| PREDICTED: eukaryotic initiation factor 4A-II [Nomascus leucogenys]
          Length = 407

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 74  IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 133

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 134 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 190

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK  T+  V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 191 RGFKDQIYEIFQKLNTSIQVVLLSAT-MP----------TDVLEVTKKFM-RDPIR---I 235

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 236 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHA 295

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 296 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 346


>gi|281350720|gb|EFB26304.1| hypothetical protein PANDA_002799 [Ailuropoda melanoleuca]
          Length = 399

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 66  IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 125

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 126 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 182

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK  T+  V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 183 RGFKDQIYEIFQKLNTSIQVVLLSAT-MP----------TDVLEVTKKFM-RDPIR---I 227

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 228 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHA 287

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 288 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 338


>gi|323524408|ref|YP_004226561.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323381410|gb|ADX53501.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 467

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 138/309 (44%), Gaps = 32/309 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + I++  +  + I V
Sbjct: 50  IAQAKTGSGKTAAFSLALLARLDARKFAVQAMVLCPTRELADQVTQEIRRLARAEENIKV 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G  P   +  +LE   HG AHI++GT     D ++   L L     +++DE  R  
Sbjct: 110 LTLCGGTPMRPQTASLE---HG-AHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRML 165

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIK 459
              F       + Q       LL +AT  P  +V  S   L +    K+ E+    K I+
Sbjct: 166 DMGFFDDIATVVRQCPKERQTLLFSAT-YPEGIVKLSQQFLRNPKEVKLAERHDDTK-IR 223

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
                ++  DE +  + ++L+  +    +     +++  +   V+ R    H     ++A
Sbjct: 224 QRFYEVSE-DERLHAVGLLLNHYRPVSTLAFCNTKQQCRDLLDVL-RAQGFH-----ALA 276

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++
Sbjct: 277 L-HGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI 335

Query: 580 RGRVGRGEE 588
            GR GR ++
Sbjct: 336 -GRTGRADQ 343


>gi|225717006|gb|ACO14349.1| Eukaryotic initiation factor 4A-III [Esox lucius]
          Length = 406

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 144/340 (42%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    +++   ++      QA+I+AP
Sbjct: 56  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAP 109

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +      G     +  + + ++ +GQ H++ GT     D 
Sbjct: 110 TRELAGQIQKVLLALGDYMNVQCHACIGG---TNVGEDIRKLDYGQ-HVVAGTPGRVFDM 165

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++    +   P   V L++AT     L +T+
Sbjct: 166 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTN 225

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGKKA 485
               D  +I  K      + IK   + + R +   + L             +  +  +K 
Sbjct: 226 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 285

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  ++L
Sbjct: 286 DWL---TEKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGASRVL 326

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 327 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 365


>gi|326502382|dbj|BAJ95254.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 412

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 132/312 (42%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT +  +++   +E      QA+I++P   LA Q    ++       + V 
Sbjct: 80  IAQAQSGTGKTSMISLSVCQVIETNVHEVQALILSPTRELATQTERVMQAVGSFMSVSVH 139

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        + LE       H++ GT     D I+   L        +L   DE   
Sbjct: 140 ACVGGKSIGEDIRKLE----SGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDEADEMLS 195

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V+L++AT +P           DI +IT K     P++   I
Sbjct: 196 RGFKDQIYDVYRYLPPELQVVLISAT-LPH----------DILEITSKFM-TDPVR---I 240

Query: 464 PINRIDEVIERLKVVLSEGKKAYW----ICPQIEEKKESN---FRSVVERFNSLHEHFTS 516
            + R +  +E +K      +K  W    +C   +    +    F +   + + L E   +
Sbjct: 241 LVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRT 300

Query: 517 ---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++ +HG M   +++++M+ F+ GT ++LI T V   G+DV   S++I  +  +   
Sbjct: 301 NNFTVSAMHGDMPQKERDAIMNEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRE 360

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 361 LYIHRI-GRSGR 371


>gi|300703503|ref|YP_003745105.1| ATP-dependent RNA helicase, dead-box family [Ralstonia solanacearum
           CFBP2957]
 gi|299071166|emb|CBJ42480.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           CFBP2957]
          Length = 495

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 122/296 (41%), Gaps = 37/296 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q Y+ + KY + T +   ++ G +    + + L R       I++ T
Sbjct: 93  RALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRR----GVEILVAT 148

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLV 436
                D     S+   ++ ++++DE  R      L   Q+       ++   P  R TL+
Sbjct: 149 PGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQR-------IINLLPAHRQTLL 201

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I K+      R P    +   N   + + ++   + +G K   +   + ++ 
Sbjct: 202 FSATFSPEIKKLAAS-YLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQRA 260

Query: 497 E----------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E          SN +    R     E    +   IHG  + I++   +++FK GT  +L+
Sbjct: 261 EQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGTVDVLV 320

Query: 547 ATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT V   G+D+     +I      NAE +    +H++ GR GR       + L+ P
Sbjct: 321 ATDVAARGLDISQMPCVINFDLPFNAEDY----VHRI-GRTGRAGASGDALSLFAP 371


>gi|269103962|ref|ZP_06156659.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163860|gb|EEZ42356.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 734

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 9/138 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   + AG QA+I+ P IG++ Q    F +++     + ++ I
Sbjct: 222 LLEGITGSGKTEVYLNLLEPVLAAGKQALILVPEIGLMPQTINRFRRRFN----VPLKTI 277

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              +    R  A       QA IIIGT  ALF     +  L ++IVDE+H    +Q+  L
Sbjct: 278 HSGLNDTERLTAWLAGRDNQAGIIIGTRSALF---TPFANLGIIIVDEEHDASYKQQDSL 334

Query: 415 TQKATAPHVLLMTATPIP 432
              A    V+  +   IP
Sbjct: 335 RYHARDLAVMRASQDNIP 352


>gi|207723759|ref|YP_002254157.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|207743814|ref|YP_002260206.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|206588963|emb|CAQ35925.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|206595214|emb|CAQ62141.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 495

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 122/296 (41%), Gaps = 37/296 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q Y+ + KY + T +   ++ G +    + + L R       I++ T
Sbjct: 93  RALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRR----GVEILVAT 148

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLV 436
                D     S+   ++ ++++DE  R      L   Q+       ++   P  R TL+
Sbjct: 149 PGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQR-------IINLLPAHRQTLL 201

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I K+      R P    +   N   + + ++   + +G K   +   + ++ 
Sbjct: 202 FSATFSPEIKKLAAS-YLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQRA 260

Query: 497 E----------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E          SN +    R     E    +   IHG  + I++   +++FK GT  +L+
Sbjct: 261 EQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGTVDVLV 320

Query: 547 ATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT V   G+D+     +I      NAE +    +H++ GR GR       + L+ P
Sbjct: 321 ATDVAARGLDISQMPCVINFDLPFNAEDY----VHRI-GRTGRAGASGDALSLFAP 371


>gi|58584965|ref|YP_198538.1| superfamily II DNA/RNA helicase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58419281|gb|AAW71296.1| Superfamily II DNA/RNA helicase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 408

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 150/362 (41%), Gaps = 58/362 (16%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAI------KDILQDMSQKNRMLRILQGDVG 303
           E+G+P+     +AQ + +N    PT  Q  AI      KDIL                 G
Sbjct: 6   EMGLPL----LLAQALDKNSFSVPTPVQAQAIPLALKGKDILGS------------AQTG 49

Query: 304 SGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQ-HYEFIKKYTQNTQIIVEIITGNM 359
           +GKTL   + LIA          A+++ P   LAQQ   E  K   +N+ + + ++ G  
Sbjct: 50  TGKTLAFAIPLIAKLLGEPNASTALVIVPTRELAQQVTNEIGKLLLKNSVLKIALLIGGE 109

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-----FGVQ 409
           P   +   L+R    +  I+IGT     D I+   LI      +++DE  R     FG+Q
Sbjct: 110 PIFRQLNQLQR----RPRIVIGTPGRIIDHIERKTLITNNVSTLVLDEVDRMFDMGFGIQ 165

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
               +         L+ +AT +P           DI K+ EK +  +P +  +       
Sbjct: 166 IEGIMKYLPKMRQNLMFSAT-LPG----------DIVKLAEKYSN-QPERVSVENEATTS 213

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKES--NFRSVVERFNSLHEHF---TSSIAIIHGR 524
             I++  +  SE +K   +  Q+ ++K S   F    +R + L         S   IHG 
Sbjct: 214 VKIKQEIIYASESEKYGKLVTQLYQRKGSIIVFVRTKQRADQLAYKLRKDNHSALAIHGD 273

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +    ++ V++SF+ G  ++++AT V   G+D+     +I  +A       +H+  GR  
Sbjct: 274 LKQRKRKRVINSFRRGHNQIMVATDVASRGLDIPHIQHVINYDAPESQANYIHRT-GRTA 332

Query: 585 RG 586
           R 
Sbjct: 333 RA 334


>gi|324111444|gb|EGC05425.1| primosomal protein N [Escherichia fergusonii B253]
          Length = 732

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|311279320|ref|YP_003941551.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308748515|gb|ADO48267.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 457

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 141/322 (43%), Gaps = 42/322 (13%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEI 354
           Q   GSGKT    + +   ++A     Q++++ P   LA Q    ++K  +    I V  
Sbjct: 46  QAKTGSGKTAAFGLGLLQHIDASQFITQSLVLCPTRELADQVASALRKLARFMPNIKVLT 105

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRFGVQ 409
           + G +P + +R +L        HII+ T       L ++++    L  +++DE  R    
Sbjct: 106 LCGGLPFSVQRDSLTH----APHIIVATPGRLLDHLKKETVSLDALQTLVLDEADRM--- 158

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             L +   A A   ++  A    +TL+ ++    +I+ I+ +   R P+   I  ++ + 
Sbjct: 159 --LDMG-FADALDEVIAWAPEKRQTLLFSATWPAEIAAISRR-IQRDPLTIEIDTVDELP 214

Query: 470 EVIER------------LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            V +R            L+ +LS+ + A  +   +    + + ++V +  +  ++    S
Sbjct: 215 AVEQRFYEVSRSGKIGLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALSDSNQ----S 267

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +  +HG M   D++  +  F NG+ ++L+AT V   G+D+    ++I  N E     ++H
Sbjct: 268 VLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKALEMVI--NYELSWDPEVH 325

Query: 578 QLR-GRVGRGEEISSCILLYHP 598
             R GR  R  E    I L  P
Sbjct: 326 VHRIGRTARAGERGLAISLCAP 347


>gi|308185825|ref|YP_003929956.1| ATP-dependent RNA helicase dbpA [Pantoea vagans C9-1]
 gi|308056335|gb|ADO08507.1| ATP-dependent RNA helicase dbpA [Pantoea vagans C9-1]
          Length = 460

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 152/343 (44%), Gaps = 43/343 (12%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           LR + + S T  Q + +  ILQ      R +R  Q   GSGKT    I +   +++    
Sbjct: 18  LREMGYTSMTPVQAATLPAILQ-----GRDVRA-QAKTGSGKTAAFGIGLLHHIDSTRFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIK---KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            QA+I+ P   LA Q    ++   ++T+N +++   + G  P + +R +L        HI
Sbjct: 72  TQALILCPTRELADQVGNVLRQLARFTRNIKVLT--LCGGQPMSAQRDSLVH----PPHI 125

Query: 379 IIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKAT--APHVLLMTA 428
           ++GT     D I    L L     +++DE  R    G    ++   +AT  +   LL +A
Sbjct: 126 VVGTPGRILDHINRENLKLDQLSTLVLDEADRMLEMGFLNDMETIIEATPASRQTLLFSA 185

Query: 429 T-PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           T P   T + T      +S +TE  +    I       +  +E +  L  +LS+ + +  
Sbjct: 186 TWPDGITAISTRFQRDALSVVTEDVSELPSIDQQFFEASH-NEKLGLLIALLSDRQPSSC 244

Query: 488 I--CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +  C     K+E +     +   +L+    S++ + HG +   D+E V+  F NG+ ++L
Sbjct: 245 VVFC---NTKRECD-----DVAAALNARDISALPL-HGDLEQRDRERVLIRFANGSGRVL 295

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +AT V   G+D+   ++++           LH++ GR  R  E
Sbjct: 296 VATDVAARGLDIKSLAMVVNYQLAWDPEVHLHRI-GRTARAGE 337


>gi|153809380|ref|ZP_01962048.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185]
 gi|149127966|gb|EDM19188.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185]
          Length = 375

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 157/354 (44%), Gaps = 62/354 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---------VALIAMAAAVEAGGQ 323
           PT  QE AI   L     K  +L   Q   G+GKT          + +++  +    G +
Sbjct: 24  PTPIQEKAIPAALA----KRDILGCAQ--TGTGKTASFAIPIIQHLQVVSKESVKRQGIK 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR----RKALERIAH--GQAH 377
           A+I+ P   LA Q  E I  Y++ T++   +I G + Q  +    RK ++ +    G+  
Sbjct: 78  ALILTPTRELALQISECIDDYSKYTRVRHGVIFGGVNQRPQVDMLRKGIDILVATPGRLL 137

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIP 432
            ++    +  D+IQY+     ++DE  R    G    +K  L +       L  +AT +P
Sbjct: 138 DLMNQGHIHLDTIQYF-----VLDEADRMLDMGFIHDIKRILPKLPKEKQTLFFSAT-MP 191

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIP----INRIDEVI------ERLKVVLSEG 482
            T+V  +           K   + P+K  I P    ++ I++V+      E+ ++++S  
Sbjct: 192 DTIVTLT-----------KSLLKNPVKIYITPKSSTVDSINQVVYFVEKKEKSQLLISIL 240

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +KA      I  + + N   +V+    L +    S AI HG  S   ++S + +FK+G  
Sbjct: 241 QKAEDQSVLIFSRTKHNADKIVK---ILGKAGIGSQAI-HGNKSQAARQSALGNFKSGKT 296

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           ++++AT +   GID+ +  ++I  +        +H++ GR GR    G  ++ C
Sbjct: 297 RVMVATDIASRGIDISELPMVINYDLPDVPETYVHRI-GRTGRAGNTGTALTFC 349


>gi|50954624|ref|YP_061912.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951106|gb|AAT88807.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 491

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 129/319 (40%), Gaps = 55/319 (17%)

Query: 297 ILQGDVGSGKT----LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           I Q   G+GKT    L  +  + A  E G QA+++ P   LA Q YE +++   N    +
Sbjct: 42  IGQAKTGTGKTFGFGLPIIQRLGADPEPGVQALVVVPTRELAVQVYEDLEQAASNRPTSI 101

Query: 353 EIITGNMPQAHRRKALE-RIAH--GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
             I G        KA E +IA     A +++GT     D      L L  V E       
Sbjct: 102 AAIYGG-------KAYEGQIAQLKAGAQVVVGTPGRLLDLAGQRLLNLSTVREMVLDEAD 154

Query: 410 QRLKL----------TQKATAPHVLLMTATPIPRTLVLTS-----------LGDIDISKI 448
           + L L           Q     H +L +AT +P  +V  +             D D  +I
Sbjct: 155 KMLDLGFLSDIEKLFAQTPATRHTMLFSAT-MPGPIVALARRFMTRPIHIRATDPDEGQI 213

Query: 449 TEKPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
                    IK ++   + +D  EV+ R  ++ SEG+    I  + +       RS  + 
Sbjct: 214 QAN------IKHLVYRAHSLDKDEVVAR--ILQSEGRGKTVIFTRTK-------RSAAKL 258

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              L++   ++ A+ HG ++   +E  M +FK G   +LIAT V   GIDV D + +I  
Sbjct: 259 MEELNDRGFNAAAV-HGDLNQEQRERAMAAFKAGKKDVLIATDVAARGIDVDDVTHVINH 317

Query: 567 NAEHFGLAQLHQLRGRVGR 585
                    LH+  GR GR
Sbjct: 318 TIPDDEKTYLHRA-GRTGR 335


>gi|323964288|gb|EGB59771.1| primosomal protein N [Escherichia coli M863]
 gi|327250573|gb|EGE62281.1| primosomal protein N' [Escherichia coli STEC_7v]
          Length = 732

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|259503545|ref|ZP_05746447.1| DNA replication factor Y [Lactobacillus antri DSM 16041]
 gi|259168623|gb|EEW53118.1| DNA replication factor Y [Lactobacillus antri DSM 16041]
          Length = 809

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 100/242 (41%), Gaps = 40/242 (16%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P      Q+ A+  I   +  +     +LQG  GSGKT V L A+A A+  G  A+++ P
Sbjct: 270 PLQLNADQQRAVDAIGAQVHSRQATTFLLQGVTGSGKTEVYLQAIAQALAEGRTALMLVP 329

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            I +  Q    F +++       V ++   +    +     RI  G+A +++G  +    
Sbjct: 330 EISLTPQIVNRFRRRFGSQ----VAVLHSGLANGEQYDEWRRIERGEAKVVVGARSAVFA 385

Query: 389 SIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            ++  +L L+I+DE+H          R+  ++  K   +     V+L +ATP   +    
Sbjct: 386 PLK--QLGLIILDEEHESSYKQDEAPRYHAREVAKWRGRYHGAPVVLGSATPSLESRARA 443

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
             G     ++  +   R+P+     PI  +D                  + P+I+ + ES
Sbjct: 444 LKGRYQFLRLPHR-VNRQPLP----PIQVVD------------------MRPEIKRRGES 480

Query: 499 NF 500
           NF
Sbjct: 481 NF 482


>gi|255280387|ref|ZP_05344942.1| putative helicase, ATP-dependent [Bryantella formatexigens DSM
           14469]
 gi|255268852|gb|EET62057.1| putative helicase, ATP-dependent [Bryantella formatexigens DSM
           14469]
          Length = 566

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 4/99 (4%)

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           R   E +  L +HF   +   H RM      + ++ F++G+ ++LIA   I+ G+DV DA
Sbjct: 364 RQAEELYTLLQKHFPGKVGRYHSRMGQQANRNTLNRFRDGSIRILIACKAIDEGLDVPDA 423

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGR---GEEISSCILLY 596
           +  II +       ++ +L GR+ R   G+E +S   L+
Sbjct: 424 ATGIILSGTSMQRQRIQRL-GRILRRADGKEYASLYYLH 461


>gi|224141279|ref|XP_002324002.1| predicted protein [Populus trichocarpa]
 gi|222867004|gb|EEF04135.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 138/316 (43%), Gaps = 56/316 (17%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI             + G   ++++P   LA Q  +   K+ ++++I    
Sbjct: 200 TGSGKTLGYLIPGFIHLKRCRNDPQLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTC 259

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--- 406
           + G  P+  + K L+R     A I++ T     D ++  ++ L     +++DE  R    
Sbjct: 260 LYGGAPKGPQLKELDR----GADIVVATPGRLNDILEMRRVSLNQVKYLVLDEADRMLDM 315

Query: 407 GVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPIK 459
           G + ++ K+ ++  A    LM     P+ +      +L +   ++I  I E  A +   +
Sbjct: 316 GFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNIDELVANKSITQ 375

Query: 460 TV--IIPIN---RIDEVIERLK-----VVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            V  + P+    R+++++   +     ++    KK   +C Q+        R++  +F +
Sbjct: 376 HVELLAPLEKHRRLEQILRSQEPGSKIIIFCSTKK---MCDQLA-------RNLTRQFGA 425

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                    A IHG  S  +++ V+  F+ G   +L+AT V   G+D+ D  +++  +  
Sbjct: 426 ---------AAIHGDKSQSERDHVLSQFRTGRSPILVATDVAARGLDIKDIRVVVNYDFP 476

Query: 570 HFGLAQLHQLRGRVGR 585
                 +H++ GR GR
Sbjct: 477 TGVEDYVHRI-GRTGR 491


>gi|240140800|ref|YP_002965280.1| RNA helicase [Methylobacterium extorquens AM1]
 gi|240010777|gb|ACS42003.1| RNA helicase [Methylobacterium extorquens AM1]
          Length = 519

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 142/353 (40%), Gaps = 42/353 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + +  K+ Q +       PT  Q  AI  +L     +  +L I Q   G+GKT    + M
Sbjct: 6   LGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLA----RRDVLGIAQ--TGTGKTAAFTLPM 59

Query: 315 AAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
              +E G       + +I+ P   LA Q  E  ++Y  N ++ V +I G +  A +   L
Sbjct: 60  LTMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKL 119

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
            R       ++I T     D  +  KL+L     +++DE  R        +      P +
Sbjct: 120 TR----GTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADR--------MLDMGFIPDI 167

Query: 424 -LLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             ++   P  R TL  ++    +I ++ +          V  P +    + +RL    +E
Sbjct: 168 ERIVKMVPFTRQTLFFSATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAE 227

Query: 482 GKKAYWICPQ-IEEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           G +   +    I    E        +  R V +   SL  H  ++ A+ HG M    + +
Sbjct: 228 GHEKRKVLRHLIRSASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAAL-HGDMDQRARMA 286

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            +D F++G   LL+A+ V   G+D+   S +   +  H     +H++ GR GR
Sbjct: 287 ALDGFRSGEVPLLVASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRI-GRTGR 338


>gi|295668368|ref|XP_002794733.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28
           [Paracoccidioides brasiliensis Pb01]
 gi|226286149|gb|EEH41715.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28
           [Paracoccidioides brasiliensis Pb01]
          Length = 803

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 147/365 (40%), Gaps = 69/365 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------------E 319
           P+  Q +AI   LQ     NR L I     GSGKT   L+ +   +              
Sbjct: 385 PSPIQRAAIPIALQ-----NRDL-IGVAVTGSGKTAAFLLPLLVYIGELPRLDEFEWRRN 438

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAH---GQ 375
            G  A+I+AP   LAQQ     KK++      +V I+ G+        +LE  A+     
Sbjct: 439 DGPYAIILAPTRELAQQIEIEAKKFSTPLGFNVVSIVGGH--------SLEEQAYSLRNG 490

Query: 376 AHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKL------------- 414
           A III T     D I+   ++L     VI+DE  R    G ++ +               
Sbjct: 491 AEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVANEKPD 550

Query: 415 TQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           T+ A  P  +        R   T++ T+     + +I  K   R  I T+      +D V
Sbjct: 551 TEDAENPQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNVGEAVDTV 610

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----------SIAII 521
            +R++ V  E K+   +   +  ++   FR  +  F ++  +  +          S   +
Sbjct: 611 EQRVEFVSGEDKRKKRLAEILASRE---FRPPIIVFVNIKRNCDAVARDIKNMGYSSVTL 667

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG  +   +E+ + S +NG   +L+AT +   GIDV D S+++  N      +  H++ G
Sbjct: 668 HGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRI-G 726

Query: 582 RVGRG 586
           R GR 
Sbjct: 727 RTGRA 731


>gi|222098932|ref|YP_002532990.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|229199584|ref|ZP_04326245.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1293]
 gi|221242991|gb|ACM15701.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|228583989|gb|EEK42146.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1293]
          Length = 481

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 134/326 (41%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWAENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID-ISKITEKPAGRKPIKTVI 462
             F  Q    + +  T    +L +AT +P         D++ +S+          IK   
Sbjct: 161 MGFIDQVEAIIDELPTNRMTMLFSAT-LPE--------DVERLSRTYMNAPTHIEIKAAG 211

Query: 463 IPINRI---------DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           I  ++I         DE +  LK V + E   +  I  + +E  +  +R + +R N   +
Sbjct: 212 ITTDKIEHTLFEAIEDEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-KRANYPCD 270

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                   IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +     
Sbjct: 271 K-------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEK 323

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
            + +H+  GR GR       I    P
Sbjct: 324 ESYVHRT-GRTGRAGNSGKAITFITP 348


>gi|163853383|ref|YP_001641426.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163664988|gb|ABY32355.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
          Length = 519

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 142/353 (40%), Gaps = 42/353 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + +  K+ Q +       PT  Q  AI  +L     +  +L I Q   G+GKT    + M
Sbjct: 6   LGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLA----RRDVLGIAQ--TGTGKTAAFTLPM 59

Query: 315 AAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
              +E G       + +I+ P   LA Q  E  ++Y  N ++ V +I G +  A +   L
Sbjct: 60  LTMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKL 119

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
            R       ++I T     D  +  KL+L     +++DE  R        +      P +
Sbjct: 120 TR----GTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADR--------MLDMGFIPDI 167

Query: 424 -LLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             ++   P  R TL  ++    +I ++ +          V  P +    + +RL    +E
Sbjct: 168 ERIVKMVPFTRQTLFFSATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAE 227

Query: 482 GKKAYWICPQ-IEEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           G +   +    I    E        +  R V +   SL  H  ++ A+ HG M    + +
Sbjct: 228 GHEKRKVLRHLIRSASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAAL-HGDMDQRARMA 286

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            +D F++G   LL+A+ V   G+D+   S +   +  H     +H++ GR GR
Sbjct: 287 ALDGFRSGEVPLLVASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRI-GRTGR 338


>gi|86145730|ref|ZP_01064059.1| ATP-dependent RNA helicase DbpA [Vibrio sp. MED222]
 gi|85836429|gb|EAQ54558.1| ATP-dependent RNA helicase DbpA [Vibrio sp. MED222]
          Length = 459

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 133/310 (42%), Gaps = 39/310 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I QG  GSGKT    + +   +       Q++++ P   LA Q  + I+   +    I V
Sbjct: 45  IGQGKTGSGKTAAFGLGVLQNLRVKRFRVQSLVLCPTRELADQVAKEIRTLARGIHNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF- 406
             + G MP   +  +LE   HG AHI++GT       L +D I   +L  +++DE  R  
Sbjct: 105 LTLCGGMPMGPQIGSLE---HG-AHILVGTPGRILDHLERDRIDLSELNTLVLDEADRML 160

Query: 407 --GVQQRLKLTQKATAP---HVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPI 458
             G Q  L    +A AP     LL +AT  P+ +   +   + + ++ K+ E       I
Sbjct: 161 EMGFQDALDAVIEA-APKDRQTLLFSAT-FPKQIKSVADRIMNNPEMVKV-ESTHDHSSI 217

Query: 459 KTVIIPINRIDEVIERLKVVL--SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +     +   +   + L+++L   + + A   C         N +  V+  N    H   
Sbjct: 218 QQHFYKVEGTEARDDALELMLLHHQPESAVVFC---------NTKKEVQNVNDELSHRGF 268

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S+  +HG M   +++  +  F N T  +L+AT V   G+DV +   +   N E     ++
Sbjct: 269 SVIELHGDMEQRERDQALVQFSNKTISILVATDVAARGLDVDNLDAVF--NFELSRDPEV 326

Query: 577 HQLR-GRVGR 585
           H  R GR GR
Sbjct: 327 HVHRIGRTGR 336


>gi|268325930|emb|CBH39518.1| putative ATP-dependent RNA helicase [uncultured archaeon]
          Length = 780

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 16/139 (11%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G GKT +AL  +   + A G+ + +AP   L +QH  F+         +++ +TGN+  
Sbjct: 44  TGLGKTTIALFVLINRL-AKGKVLFLAPTRPLVEQHSAFLNDVLNIDPSVIQTLTGNVLA 102

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHR-FG----VQQR 411
             R K  +      A II+ T     + L  + I    + L+I DE HR  G    V   
Sbjct: 103 DKRAKLWD-----DAKIIVSTPQIIENDLLSNRINLSAVSLIIFDECHRAVGNYSYVYIA 157

Query: 412 LKLTQKATAPHVLLMTATP 430
            K  ++A AP VL MTA+P
Sbjct: 158 EKYAEQAIAPLVLGMTASP 176


>gi|257066452|ref|YP_003152708.1| primosomal protein N' [Anaerococcus prevotii DSM 20548]
 gi|256798332|gb|ACV28987.1| primosomal protein N' [Anaerococcus prevotii DSM 20548]
          Length = 790

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +  G +A+I+ P I +  Q    F  ++ +     + I+
Sbjct: 277 LLYGVTGSGKTEIFLQMVEKVISEGKEAIILVPEISLTPQTIERFKGRFNEK----IAIM 332

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
              +    R      I +G+  I+IG   A+F     +  L ++I+DE+H          
Sbjct: 333 HSRLTPKERFNQWRMINNGEVKIVIGARSAIFA---PFRNLGIIIIDEEHDQSYVSSQDP 389

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           ++   +      +A + +++L TATP  R++     GD ++ K+  +     P
Sbjct: 390 KYHTDEIAIERARAHSCNLILATATPSIRSMARVEEGDFELIKLNNRVNNHMP 442


>gi|82196760|sp|Q5U526|I4A3A_XENLA RecName: Full=Eukaryotic initiation factor 4A-III-A;
           Short=eIF-4A-III-A; Short=eIF4A-III-A; AltName:
           Full=ATP-dependent RNA helicase DDX48-A; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3-A; AltName:
           Full=DEAD box protein 48-A; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3 A
 gi|54311504|gb|AAH84859.1| Unknown (protein for MGC:85498) [Xenopus laevis]
          Length = 415

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 144/340 (42%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    +++   ++      QA+I+AP
Sbjct: 65  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAP 118

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +      G     +  + + ++ +GQ H++ GT     D 
Sbjct: 119 TRELAGQIQKVLLALGDYMNVQCHACIGG---TNVGEDIRKLDYGQ-HVVAGTPGRVFDM 174

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++    +   P   V L++AT     L +T+
Sbjct: 175 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTN 234

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGKKA 485
               D  +I  K      + IK   + + R +   + L             +  +  +K 
Sbjct: 235 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 294

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  ++L
Sbjct: 295 DWL---TEKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGASRVL 335

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 336 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 374


>gi|16198386|gb|AAH15842.1| Eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
          Length = 407

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 74  IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 133

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 134 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 190

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK  T+  V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 191 RGFKDQIYEIFQKLNTSIQVVLLSAT-MP----------TDVLEVTKKFM-RDPIR---I 235

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 236 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHA 295

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 296 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 346


>gi|82546284|ref|YP_410231.1| primosome assembly protein PriA [Shigella boydii Sb227]
 gi|81247695|gb|ABB68403.1| primosomal protein N' [Shigella boydii Sb227]
 gi|320184933|gb|EFW59717.1| Helicase PriA essential for oriC/DnaA-independent DNA replication
           [Shigella flexneri CDC 796-83]
          Length = 732

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|228942602|ref|ZP_04105134.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228982168|ref|ZP_04142457.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis Bt407]
 gi|228777520|gb|EEM25798.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis Bt407]
 gi|228817028|gb|EEM63121.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943251|gb|AEA19147.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 481

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 133/324 (41%), Gaps = 42/324 (12%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGV 408
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEM-- 158

Query: 409 QQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKP---IKTVIIP 464
              +    +  A    ++   PI R T++ ++    D+ K++           IK   I 
Sbjct: 159 -LNMGFIDQVEA----IIDELPIKRMTMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGIT 213

Query: 465 INRID----EVIERLK------VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            ++I+    EVIE  K      V   E   +  I  + +E  +  +R +  R N   +  
Sbjct: 214 TDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-NRANYPCDK- 271

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      +
Sbjct: 272 ------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKES 325

Query: 575 QLHQLRGRVGRGEEISSCILLYHP 598
            +H+  GR GR       I    P
Sbjct: 326 YVHRT-GRTGRAGNSGKAITFITP 348


>gi|227114116|ref|ZP_03827772.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 460

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 144/319 (45%), Gaps = 50/319 (15%)

Query: 302 VGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIVEII 355
            GSGKT    + L+      +   QA+++ P   LA Q       + ++ QN +I+   +
Sbjct: 50  TGSGKTAAFGIGLLDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILT--L 107

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQ 410
            G  P   +   L+ + H   HI++GT    QD     S+    L ++++DE  R     
Sbjct: 108 CGGQPMGQQ---LDSLVHA-PHIVVGTPGRIQDHLRKQSLSLDSLKVLVLDEADRM---- 159

Query: 411 RLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
              L    T     +++ TP  R TL+ ++    +I +I+ +   R+P +  I   + ++
Sbjct: 160 ---LDMGFTDAIDDVISYTPSDRQTLLFSATYPEEIEQISAR-VQRQPQRFEIA--DGVE 213

Query: 470 E-VIERLKVVLSEGKKAYWICPQIEEKKESNF-------RSVVERFNSLHEHFTSSIAII 521
           E  IE+     ++ ++   +   +   + S+        R     F++L     S ++ +
Sbjct: 214 ESAIEQRFYETTKDQRLPLLIAILGHYQPSSCVVFCNTKRDCQSVFDALDMRGIS-VSAL 272

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA---QLHQ 578
           HG +   D++ V+  F N +C++L+AT V   G+D+ +  +++     +F LA   ++H 
Sbjct: 273 HGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELELVV-----NFELAFDPEVHV 327

Query: 579 LR-GRVGR----GEEISSC 592
            R GR GR    G  +S C
Sbjct: 328 HRIGRTGRAGTKGLAVSLC 346


>gi|29840602|ref|NP_829708.1| primosome assembly protein PriA [Chlamydophila caviae GPIC]
 gi|29834952|gb|AAP05586.1| primosomal protein N' [Chlamydophila caviae GPIC]
          Length = 749

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 84/208 (40%), Gaps = 18/208 (8%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P  P   Q+SA+  I   +S       +L G  GSGKT V   A+  A + G  A+++ P
Sbjct: 209 PLHP--QQQSAVDKISSSLSLGKFQTHLLFGITGSGKTEVYFQAIREARKLGKSAILLVP 266

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q     K +       V I+   +  + R K     + G   IIIG  +     
Sbjct: 267 EIALTIQTVTLFKAHFGKE---VGILHHKLSDSDRNKTWREASKGNISIIIGPRSALFCP 323

Query: 390 IQYYKLILVIVDEQHRFGVQQRLK-----------LTQKATAPHVLLMTATPIPRTLVLT 438
           +Q   L L+IVDE+H    +Q              +  K     V+L +ATP   +    
Sbjct: 324 VQ--NLGLIIVDEEHDPAYKQSESHPCYHARDVAVMRGKLAHATVILGSATPSLESYSNA 381

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN 466
             G   +S+++ + A   P K  +I +N
Sbjct: 382 LSGKYILSELSTRAAAASPAKVSLIDMN 409


>gi|95928576|ref|ZP_01311323.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95135366|gb|EAT17018.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 587

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 162/390 (41%), Gaps = 56/390 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITG 357
            G+GKT    + +   ++      Q +++AP   LA Q  E ++ + +   ++ V  + G
Sbjct: 50  TGTGKTAAFGLPLLGKIDPSKKYPQMLVLAPTRELAIQVSEALQSFAKYLPKVKVLAVYG 109

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQ 409
             P   + KAL    H    +++GT     D +        Q   ++L   DE  R G  
Sbjct: 110 GQPMYQQLKAL----HDGVQVVVGTPGRIMDHMERKSLRLEQISAVVLDEADEMLRMGFI 165

Query: 410 QRLKLTQKATAP--HVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           + ++    AT P     L +AT  P  R +    LGD    +I  +              
Sbjct: 166 EDVETILGATPPRCQCALFSATMPPAIRRVAERYLGDAQEVQIASR-------------T 212

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS----LHEHFTS---SI 518
           + +D++ +R  ++ +  K  + +  ++ E +E +   V  R  +    L E   +   + 
Sbjct: 213 STVDQIEQRYLMLRANQK--FDVLTRLIEAQEIDGTIVFVRTKTATTELAERLEARGYNA 270

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A ++G +S   +E  +   KNG+  ++IAT V   G+DV   S +   +      A +H+
Sbjct: 271 APLNGDLSQQVRERTIGRLKNGSLDIVIATDVAARGLDVERISHVFNYDIPFDTEAYIHR 330

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           + GR GR     + IL   P   +       +LK+ E      + D+   K  ++    Q
Sbjct: 331 I-GRTGRAGRTGTAILFVTPQERR-------LLKSIERA---TKRDI---KPIDVPTSDQ 376

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            G  +    + ++HD+L + +  D + +LT
Sbjct: 377 IGARRIATFKKQIHDTLDQYSLADLRELLT 406


>gi|328780921|ref|XP_394723.3| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
           mellifera]
          Length = 726

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 144/337 (42%), Gaps = 41/337 (12%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G   +I+AP   LAQQ     + +  ++ I   
Sbjct: 152 TGSGKTLAYILPATVHINHQPRLSRGDGPIVLILAPTRELAQQIQSVARDFGSSSCIRNT 211

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR--- 405
            I G  P+  + + LER       I I T       L + +    +   +++DE  R   
Sbjct: 212 CIFGGSPKGPQARDLER----GVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLD 267

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKP 457
             F  Q R  + Q      VL+ +AT  P+ +       L+    I+I  +T   A    
Sbjct: 268 MGFEPQIRKIIEQIRPDRQVLMWSAT-WPKEVQALAEDFLSDYIQINIGSLTL--AANHN 324

Query: 458 IKTVIIPINRIDEVIERLKVVLSE-GK-KAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           I+  I+ I +  E   +L  +L E GK +   +   +E KK+     V +   ++     
Sbjct: 325 IRQ-IVEICQEHEKEMKLSNLLREIGKDRGSKMIIFVETKKK-----VDDITKAIKREGW 378

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            +I+I HG  S  +++ V+  F+NG   +L+AT V   G+DV D   +I  +  +     
Sbjct: 379 PAISI-HGDKSQPERDYVLSEFRNGKTMILVATDVAARGLDVEDVKYVINFDYPNSSEDY 437

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +H++ GR GR +   +    + P  ++ +   +SVL+
Sbjct: 438 IHRI-GRTGRCQSAGTAYAYFTPNNARQAKELISVLE 473


>gi|317127486|ref|YP_004093768.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315472434|gb|ADU29037.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 500

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 131/310 (42%), Gaps = 38/310 (12%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT+   +  +      E   QA+++ P   LA Q  E + K  Q   I   
Sbjct: 43  IGQAQTGTGKTVAFGIPCVEQVVVEEKHPQALVLTPTRELAIQVAEELNKLGQVKGIKAL 102

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-------QYYKLILVI-VDEQHR 405
            I G      +  AL++    +  II+ T   + D +       ++ K++++   DE   
Sbjct: 103 PIYGGQEITRQITALKK----RPQIIVATPGRYMDHMRRKTIRPEFLKIVVLDEADEMLS 158

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  + ++  L +       LL +AT  P+   L ++ D  ++K         P+   + 
Sbjct: 159 MGFIEDIETILQEVPGERQTLLFSATMPPK---LKTIADRFMNK---------PVSIAVK 206

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--- 520
                 E IE+  + LSE +K   +C  + + +      +  R     +  T S++I   
Sbjct: 207 AKQLTVENIEQRYIALSEKEKFDTLC-NLLDMETPELAIIFGRTKRRVDELTESLSIRGF 265

Query: 521 ----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               +HG M    ++ V+  FK G+  +++AT V   G+DV D S +I  +      + +
Sbjct: 266 AVEGLHGDMKQERRDQVIRKFKRGSIDVMVATDVAARGLDVNDVSHVINFDLPQDSESYV 325

Query: 577 HQLRGRVGRG 586
           H++ GR GR 
Sbjct: 326 HRI-GRTGRA 334


>gi|328779158|ref|XP_001122489.2| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
           mellifera]
          Length = 616

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 139/339 (41%), Gaps = 59/339 (17%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  ++     +          G  A+I+AP   LAQQ  +    + 
Sbjct: 150 MVGIAQ--TGSGKTLAYILPAIVHINHQPRLNRNDGPIALILAPTRELAQQIQQVASDFG 207

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIV 400
            ++Q+    I G  P+  + + LER       I I T     D     +    +   +++
Sbjct: 208 ISSQVRNTCIFGGAPKGPQARDLER----GVEICIATPGRLIDFLERGTTNLRRCTYLVL 263

Query: 401 DEQHRF---GVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITE 450
           DE  R    G + ++ K+ ++       LM +   P+ +       LT    I+I  +  
Sbjct: 264 DEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRNLAEEFLTDYIQINIGSLQ- 322

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-------RSV 503
                      +   + I ++++  +    EGK    +  +I  + E+         R V
Sbjct: 323 -----------LAANHNILQIVDVCEEYEKEGKLMK-LLEEISNEPENKTIIFVETKRKV 370

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +   +++ +   +I I HG  S  +++ V++ F+N    +L+AT V   G+DV D   +
Sbjct: 371 DDITRAINRYGWQAIGI-HGDKSQQERDYVLNQFRNSRSAILVATDVAARGLDVEDVKFV 429

Query: 564 II----ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           I      N+E +    +H++ GR GR +   +    + P
Sbjct: 430 INLDYPSNSEDY----VHRI-GRTGRSQRTGTAYAFFTP 463


>gi|311743209|ref|ZP_07717016.1| DeaD protein [Aeromicrobium marinum DSM 15272]
 gi|311313277|gb|EFQ83187.1| DeaD protein [Aeromicrobium marinum DSM 15272]
          Length = 567

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 149/369 (40%), Gaps = 46/369 (12%)

Query: 302 VGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-VEIITG 357
            G+GKT    + +   ++   A  QA+I+AP   LA Q  +    Y   T  + +  + G
Sbjct: 52  TGTGKTAAFALPILERLDPDRAETQALILAPTRELALQVSDAFATYAARTPGLRILPVYG 111

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQ 409
               A + + L+R     AH+++GT     D +    L        +L   DE    G  
Sbjct: 112 GQGYAAQLRGLQR----GAHVVVGTPGRVIDHLDRGSLELSGLDHLVLDEADEMLTMGFA 167

Query: 410 QRLK--LTQKATAPHVLLMTAT--PIPRTLVLTSLGD-IDISKITEKPAGRKPIKTV--- 461
           + ++  L        V L +AT  P  R L    L D +D++     PA  +   TV   
Sbjct: 168 EDVERILADTPEDKQVALFSATMPPAIRRLAKKYLNDPVDVAT----PAATRSTTTVRQR 223

Query: 462 --IIPI-NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
              +P   + D +   L+V   +G   +    Q  E+     RS    F++         
Sbjct: 224 WISVPHHGKFDALTRLLEVENGDGMIIFVRTKQATEELAEKLRS--RGFDA--------- 272

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A ++G +    +E ++   K G+  +L+AT V   G+DV   + +I  +  H   + +H+
Sbjct: 273 AALNGDLVQAQRERIVGQLKGGSLDILVATDVAARGLDVDRITHVINHDIPHDAESYVHR 332

Query: 579 LRGRVGRGEEISSCILLYHPPLSK--NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           + GR GR       +L   P   +  ++  ++S     E     AEE   QR E     I
Sbjct: 333 I-GRTGRAGRSGEAVLFVTPRERRMLSAIEKVSGRPVEEMSVPSAEEVNTQRSERFAAAI 391

Query: 637 KQS-GMPKF 644
            +S G P+F
Sbjct: 392 TESLGSPQF 400


>gi|152981080|ref|YP_001353634.1| ATP-dependent RNA helicase DbpA [Janthinobacterium sp. Marseille]
 gi|151281157|gb|ABR89567.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 478

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 136/321 (42%), Gaps = 36/321 (11%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    + L+          QA+++ P   LA Q    +++  + T+ I V
Sbjct: 60  IAQAKTGSGKTAAFGIGLLQKLNPTWFAVQALVICPTRELADQVSNELRRLARATENIKV 119

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF- 406
             + G  P    R  +  + HG AHI++GT    +D     +I   K+  +++DE  R  
Sbjct: 120 LTLCGGAPM---RPQIASLEHG-AHIVVGTPGRIRDHISRETINLSKVQTLVLDEADRMV 175

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             G  + +            +++A P  R TL+ ++    DI + + +   R P++  + 
Sbjct: 176 DMGFYEEI----------AGIVSACPTRRQTLLFSATYPDDIRRASAEFL-RDPVEIKVE 224

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS------LHEHFTSS 517
             +   ++ +R   V  + + A         +  S       + +       L     S+
Sbjct: 225 AQHDDSQIEQRFYAVDYDDRNAAVATLLKHYRPVSTLAFCNTKIHCRELAAELRAQGFSA 284

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A+ +G +   +++ ++  F N +C +L+AT V   G+D+     +I  +        +H
Sbjct: 285 LAL-YGELEQRERDEILVLFANQSCSVLVATDVAARGLDIQSLGAVINVDVSKDTEVHIH 343

Query: 578 QLRGRVGRGEEISSCILLYHP 598
           ++ GR GRG++    + L  P
Sbjct: 344 RI-GRTGRGQDKGLALSLCAP 363


>gi|62185415|ref|YP_220200.1| primosome assembly protein PriA [Chlamydophila abortus S26/3]
 gi|62148482|emb|CAH64252.1| putative primosomal replication factor [Chlamydophila abortus
           S26/3]
          Length = 749

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 16/201 (7%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+ A+  I   +S       ++ G  GSGKT V   A+  A + G  A+++ P   L  Q
Sbjct: 214 QQDAVDKISSSLSSGKFQTHLIFGVTGSGKTEVYFQAIREARKLGKSAILLVPEIALTIQ 273

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
                K +       V I+   +  + R K     ++G  HI+IG  +     +Q   L 
Sbjct: 274 TVTLFKAHFGKE---VGILHHKLNDSDRNKTWRDASNGNIHIVIGPRSALFCPLQ--NLG 328

Query: 397 LVIVDEQHRFGVQQRLK-----------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           L+IVDE+H    +Q              +  K     V+L +ATP   +      G   +
Sbjct: 329 LIIVDEEHDPAYKQSESHPCYHARDVAVMRGKLANATVILGSATPSLESYANALSGKYIL 388

Query: 446 SKITEKPAGRKPIKTVIIPIN 466
           S+++ + A   P K  +I +N
Sbjct: 389 SELSSRAASAYPAKISLIDMN 409


>gi|15834779|ref|NP_296538.1| primosome assembly protein PriA [Chlamydia muridarum Nigg]
 gi|270284947|ref|ZP_06194341.1| primosome assembly protein PriA [Chlamydia muridarum Nigg]
 gi|270288973|ref|ZP_06195275.1| primosome assembly protein PriA [Chlamydia muridarum Weiss]
 gi|301336345|ref|ZP_07224547.1| primosome assembly protein PriA [Chlamydia muridarum MopnTet14]
 gi|14195052|sp|Q9PLE5|PRIA_CHLMU RecName: Full=Primosomal protein N'; AltName: Full=ATP-dependent
           helicase priA; AltName: Full=Replication factor Y
 gi|7190196|gb|AAF39035.1| primosomal protein N` [Chlamydia muridarum Nigg]
          Length = 753

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 89/212 (41%), Gaps = 18/212 (8%)

Query: 269 IPFSPTKSQES--AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           +P  PT +QE   AI  I Q +        +L G  GSGKT V L  +  A   G   ++
Sbjct: 208 LPEPPTLTQEQIEAINTISQSLITTKFQTCLLFGVTGSGKTEVYLQVIRKARSLGKSVIL 267

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   L  Q   F K +       V ++   + ++ R +   + A G  +IIIG  +  
Sbjct: 268 LVPEVALTIQTLSFFKMHFGAE---VGVLHYKLSESERTQTWHKAARGLINIIIGPRSAI 324

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATPIPRTL 435
              +Q   L L+IVDE+H    +Q              +  K T   V+L +ATP   + 
Sbjct: 325 FCPMQ--NLGLIIVDEEHDGAYKQSDLPPFYQARDVAVMRGKFTNATVILGSATPSLESY 382

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                    +S ++++ +   P K  +I +NR
Sbjct: 383 TNALSKKYTLSVLSKRASTSIPTKVSLIDMNR 414


>gi|295399200|ref|ZP_06809182.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110198|ref|YP_003988514.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
 gi|294978666|gb|EFG54262.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215299|gb|ADP73903.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
          Length = 435

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 152/360 (42%), Gaps = 43/360 (11%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIM 327
           + PT+ QE  I   L+  S       I Q   G+GKT   L+ +   ++      QAVI 
Sbjct: 25  YKPTEIQERIIPIALRGKSA------IGQSQTGTGKTHAYLLPIIEKIDPDRKAVQAVIT 78

Query: 328 APIGILAQQHYEFIKKYTQ----NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AP   LA Q Y  I K T+    + QI      G      ++KA+E++   Q HI++GT 
Sbjct: 79  APTRELATQIYHEILKITKFCPSDRQITARCFIGG---TDKQKAIEKL-KTQPHIVVGTP 134

Query: 384 ALFQDSIQYYKLIL-----VIVDEQH-----RFGVQQRLKLTQKATAPHVLLMTATPIPR 433
               D I+   L++     ++VDE        F V       +      +L+ +AT IP 
Sbjct: 135 GRINDLIREQALLVRTANTLVVDEADLMLDMGFIVDVDQIAARMPKELQMLVFSAT-IPE 193

Query: 434 TL---VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
            L   +   + + +   +  K    + I+ V++P+   D+V    +++L+       +  
Sbjct: 194 KLKPFLKKYMENPEYVHVAPKQVAAEKIEHVLVPLRSRDKVKLLHEMLLAYNPYLAIVFT 253

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             ++  +     ++E+           + I+HG +S  +++ +M   ++   + ++AT +
Sbjct: 254 NTKKMADEVADKLIEK--------GMKVGILHGDLSPRERKKMMKQIRDLEFQYIVATDL 305

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILLYHPPLSKNSYTRLS 609
              GID+   S +I  N E     Q +  R GR  R         +Y P   +++ T+L 
Sbjct: 306 AARGIDIEGVSHVI--NYELPKDLQFYIHRAGRTARAGYTGMAATIYEPS-DQDAITKLE 362


>gi|237745550|ref|ZP_04576030.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
 gi|229376901|gb|EEO26992.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
          Length = 470

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 120/286 (41%), Gaps = 29/286 (10%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q YE ++KY + T +   ++ G +  + +      I    A I+I T
Sbjct: 93  RALILVPTRELADQVYEDVRKYAKYTSLRTAVVFGGVDMSGQTG----ILRAGAEILIAT 148

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLV 436
                D IQ   + L     +++DE  R      L   Q+       ++   P  R  L+
Sbjct: 149 PGRLLDHIQQKNVNLGQTGILVLDEADRMLDMGFLPDLQR-------IVNLLPKKRQNLL 201

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK--AYWICPQIEE 494
            ++    +I K+      R P+   +   N   + + +    + E  K  A     ++ +
Sbjct: 202 FSATFSSEIRKLANSFLDR-PVSVEVARQNATADNVTQTVYRIDEADKNDAVEYLLRLHK 260

Query: 495 KKE----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +++    SN ++   R     E      A IHG  +  ++ + +D+FK G   +L+AT V
Sbjct: 261 REQVLIFSNTKAGASRLARQLEKKGLKAAAIHGDKTQAERMAALDAFKEGNITVLVATDV 320

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
              G+ + +   +I  +        +H++ GR GR    GE IS C
Sbjct: 321 AARGLHIEELPCVINFDLPFVAEDYVHRI-GRTGRAGASGEAISLC 365


>gi|255657870|ref|ZP_05403279.1| ATP-dependent RNA helicase DeaD [Mitsuokella multacida DSM 20544]
 gi|260850060|gb|EEX70067.1| ATP-dependent RNA helicase DeaD [Mitsuokella multacida DSM 20544]
          Length = 441

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 138/318 (43%), Gaps = 40/318 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I++   G+GKTL  L+ +   ++   A  QA+++ P   LA Q  +  +  +    I   
Sbjct: 43  IVKAQTGTGKTLAFLLPIIEKIKPQAAVTQALVITPTRELAIQIAKVAQSLSAAADISSL 102

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
           +I G      +++ L R  H Q  +IIGT     D +        Q  K++L   DE  R
Sbjct: 103 VIFGGQDIERQKQKLRR--HPQ--LIIGTPGRLLDHLRRQTIDLSQVNKVVLDEADEMMR 158

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  + ++   +ATA    ++L +AT   R   L++       +    P   + IK+  +
Sbjct: 159 LGFIEDVETLLEATAADRQLMLFSATMPDRVKALSA-------RYMTAPQNLE-IKSEHV 210

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAI-- 520
            ++ ID+VI    +   E  K   +C  I +  E  + ++V        H  T ++A   
Sbjct: 211 TLDAIDQVI----IDTREETKIDKLCEIINQ--EQPYLAMVFCHTKQRAHMVTMALAARG 264

Query: 521 -----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
                +HG +S + +  V+  F+    ++L AT +   G+D+   + +   +  H   + 
Sbjct: 265 YLVDELHGDLSQVQRTLVLKRFRKAELQILCATDIAARGLDIEGVTHVFNYDIPHDAESY 324

Query: 576 LHQLRGRVGRGEEISSCI 593
           +H++ GR GR  E    I
Sbjct: 325 IHRI-GRTGRAGERGKAI 341


>gi|213618976|ref|ZP_03372802.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 211

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 56  LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNTPVEVL 111

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 112 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 165


>gi|192359487|ref|YP_001981876.1| ATP-dependent RNA helicase [Cellvibrio japonicus Ueda107]
 gi|190685652|gb|ACE83330.1| ATP-dependent RNA helicase, DEAD box family [Cellvibrio japonicus
           Ueda107]
          Length = 493

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 154/339 (45%), Gaps = 46/339 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT-------LVALIAMAAAVEAGGQAV 325
           PT+ Q++AI   L+    KN ++       GSGKT       L  ++A +A      + +
Sbjct: 51  PTEVQQAAIPRALEG---KNLLV---SSKTGSGKTAAFLLPCLQQILAQSAVNPRSTRLL 104

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA+Q  +  +   + T I V  I G     +++  L +       I++ T   
Sbjct: 105 ILTPTRELARQIVKNAQSLLRFTSIKVGSICGGEELRYQKALLRK----NPEIVVATPGR 160

Query: 386 FQD-----SIQYYKLILVIVDEQHRF---GVQQR-LKLTQKATAP-HVLLMTATPIPRTL 435
             +     S  +  L  +++DE  R    G+ +  LK+ +   A    LL +AT   + L
Sbjct: 161 LAEHVAHKSTDFSGLEFLVLDEADRMLDMGLSEDVLKIVESCDAARQTLLFSATLEQKGL 220

Query: 436 --VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL---SEGKKA-YWIC 489
             ++  +   +  +I  + +  +  + +++  +  D+  ERL V L   +E +KA  ++ 
Sbjct: 221 RHLIKQVITGEAEEIYIEDSSNQIEQQMVLADD--DKHKERLAVALLNRAEYQKAIVFVN 278

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            ++   +  N    + R+N L          +HG ++  D++ V+++F+ G  ++L+AT 
Sbjct: 279 TKVRASQLDN----ILRYNQLRS------TALHGDITQDDRKRVLEAFRQGKTRVLVATD 328

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           V   G+D+    ++I     H G   LH++ GR GR ++
Sbjct: 329 VAARGLDIDGVDLVINLEMAHSGDEYLHRV-GRTGRADQ 366


>gi|163758459|ref|ZP_02165547.1| ATP-dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
 gi|162284748|gb|EDQ35031.1| ATP-dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
          Length = 729

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 147/365 (40%), Gaps = 78/365 (21%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---------A 324
           T  QES +   L+D         ++    GSGKT+   I++A  +              A
Sbjct: 24  TPVQESMLAPELRDADL------LVSAQTGSGKTVAFGISLAPTLMGEEDRLPRAETPLA 77

Query: 325 VIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++AP   LA Q   E    Y +    I   + G M     R+ L+R     AHI++GT 
Sbjct: 78  IVIAPTRELALQVERELAWLYAEAGAQIATCV-GGMNMMTERRTLQR----GAHIVVGTP 132

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLTQKATAP---HVLLMTATPIP 432
              +D I+   L L     V++DE       G +  L+    A AP     L+ +AT +P
Sbjct: 133 GRLRDHIERGSLNLTSIRAVVLDEADEMLDLGFRDDLEFILDA-APDQRRTLMFSAT-VP 190

Query: 433 ------------RTLVLTSLG------DIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                       + + +T+ G      DI+   ++            + P +R + VI  
Sbjct: 191 SGIANLAKRYQTKAVRVTTAGEQKQHLDIEYRALS------------VAPNDRENAVINV 238

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L+    + K A   C         + R+ V    +   +   ++  + G +S  ++   +
Sbjct: 239 LR--FYDAKNAIVFC---------STRATVNHLTARFSNRGFAVVALSGELSQNERSHAL 287

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG--EEISSC 592
            + ++G  K+ +AT V   G+D+ D  ++I  +        LH+  GR GR   + +S+ 
Sbjct: 288 QALRDGRAKVCVATDVAARGLDLPDLELVIHADLPKSPETLLHR-SGRTGRAGRKGVSAM 346

Query: 593 ILLYH 597
           I+ Y+
Sbjct: 347 IVPYN 351


>gi|242032643|ref|XP_002463716.1| hypothetical protein SORBIDRAFT_01g004730 [Sorghum bicolor]
 gi|241917570|gb|EER90714.1| hypothetical protein SORBIDRAFT_01g004730 [Sorghum bicolor]
          Length = 623

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 132/327 (40%), Gaps = 42/327 (12%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVE 353
            GSGKTL  LI        +  +   G   +++ P   LA Q +   K+  + ++Q +  
Sbjct: 173 TGSGKTLAFLIPAIELLYHLRFSSRNGTGVIVVCPTRELAIQTHNVAKELMKYHSQTLGY 232

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHRFG 407
           +I GN    +RR   +++A G  ++++ T     D +Q      Y +L  +++DE  R  
Sbjct: 233 VIGGN----NRRSEADQLAKG-VNLLVATPGRLLDHLQNTKSFIYKRLKCLVIDEADRI- 286

Query: 408 VQQRLKLTQKA------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           ++Q  +   K            +L +AT  P       L      +  EKP        V
Sbjct: 287 LEQNFEEDMKQIFKRLPQNRQTVLFSATQTPEVEKFAKLSFEKNEESKEKPV------YV 340

Query: 462 IIPINRIDEVIERLK---VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL--HEHFTS 516
            +  ++    +E L+    V+S  K+   +   +++K+           NS+  H    +
Sbjct: 341 GVDDDKSKATVEGLQQGYCVISSEKRFLVLYAFLKKKQNKKIMVFFSSCNSVKFHAELLN 400

Query: 517 SIAI----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
            + I    IHG+     + +   SF      +L+ T V   G+D+ D   I+  +     
Sbjct: 401 FLGIDCSDIHGKQKQQKRTTTFFSFCKAEKGILLCTNVAARGLDIPDVDYIVQYDPPDEP 460

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP 599
              +H++ GR  RGE+     LL+  P
Sbjct: 461 KDYIHRV-GRTARGEKGKGSALLFLLP 486


>gi|226329076|ref|ZP_03804594.1| hypothetical protein PROPEN_02979 [Proteus penneri ATCC 35198]
 gi|225202262|gb|EEG84616.1| hypothetical protein PROPEN_02979 [Proteus penneri ATCC 35198]
          Length = 340

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 129/307 (42%), Gaps = 63/307 (20%)

Query: 323 QAVIMAPIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           Q++I+ P   LA Q       + +Y  N +++   + G +P + +R +L    H  AHII
Sbjct: 15  QSLILCPTRELADQVANELRRLARYLPNIKVLT--LCGGVPFSIQRDSL---IHA-AHII 68

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTAT 429
           + T     D ++   + L     +++DE  R    G    +   +++  TA   LL +AT
Sbjct: 69  VATPGRLLDHLKKETVTLDDVKTLVLDEADRMLDMGFFDDINDIISRMPTARQTLLFSAT 128

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV---------------IER 474
             P  +   S       KI + P        + I IN +DE+               I  
Sbjct: 129 -WPNEIATIS------RKIQQNP--------ITIEINSVDELPAVEQQFYEISRHGKIGL 173

Query: 475 LKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           L+ +LS  + A  +  C        +  R   + + +L E   S +A+ HG M   +++ 
Sbjct: 174 LQKLLSREQPASCVVFC--------NTKRDCQDVYETLTESNQSVLAL-HGDMEQRERDQ 224

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISS 591
            +  F NG+C++L+AT V   G+D+    ++I  N E     ++H  R GR  R  E   
Sbjct: 225 TLIRFANGSCRVLVATDVAARGLDIKALEMVI--NYELSWDPEVHVHRIGRTARAGESGL 282

Query: 592 CILLYHP 598
            I    P
Sbjct: 283 AISFCAP 289


>gi|114705391|ref|ZP_01438299.1| DEAD/DEAH box helicase [Fulvimarina pelagi HTCC2506]
 gi|114540176|gb|EAU43296.1| DEAD/DEAH box helicase [Fulvimarina pelagi HTCC2506]
          Length = 587

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 141/333 (42%), Gaps = 48/333 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQ-HYEFIKKYTQ 346
           ++    GSGKT+   +AMA  +    +         A+I+AP   LA Q   E    Y  
Sbjct: 40  LVSAQTGSGKTIAYGLAMAGTLLGEAERFGPADEPVALIVAPTRELAMQVTNELGWLYAG 99

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILV 398
               +  ++ G  P+A RR    R+  G  HI++GT    +D +            L+L 
Sbjct: 100 TGAKLATLVGGMDPRAERR----RLGDG-VHIVVGTPGRLRDHLTRGALQIGNLKTLVLD 154

Query: 399 IVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTSLG---DIDISKITEKPA 453
             DE    G ++ L+   +AT      LL +AT +P+ ++  +     +    +I +  +
Sbjct: 155 EADEMLNLGFREDLEFLLQATPAERRTLLFSAT-LPKPIIQMTRNYQRNAHRIEIAKGQS 213

Query: 454 GRKPI--KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS-L 510
           G   I  + V I  N ++  +  + +  +E   A   C         N R  V   +S L
Sbjct: 214 GHADIEYRAVRIAPNEVEHAVTNV-LRHAEQPSAIVFC---------NTRETVRHLSSGL 263

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            E   +++  + G +   ++   + + ++G  ++ +AT V   G+D+    ++I  +A+ 
Sbjct: 264 IERGFAAV-TLSGELGQAERNQAIQALRDGRARVCVATDVAARGLDLPSLGLVI--HADL 320

Query: 571 FGLAQLHQLR-GRVGRGEEISSCILLYHPPLSK 602
              A+  Q R GR GR       +LL   P+S+
Sbjct: 321 PSDAETLQHRSGRTGRAGRKGVSVLLV--PISR 351


>gi|49483007|ref|YP_040231.1| helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257424870|ref|ZP_05601297.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257427538|ref|ZP_05603937.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257430169|ref|ZP_05606553.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257432870|ref|ZP_05609230.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257435774|ref|ZP_05611822.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|282903380|ref|ZP_06311271.1| putative comf operon protein 1 [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905160|ref|ZP_06313017.1| competence protein ComFA [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908136|ref|ZP_06315967.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910395|ref|ZP_06318199.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282913590|ref|ZP_06321379.1| putative comf operon protein 1 [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918543|ref|ZP_06326280.1| competence protein ComFA [Staphylococcus aureus subsp. aureus C427]
 gi|282923509|ref|ZP_06331189.1| competence protein ComFA [Staphylococcus aureus subsp. aureus C101]
 gi|283957582|ref|ZP_06375035.1| putative comf operon protein 1 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293500635|ref|ZP_06666486.1| competence protein ComFA [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509583|ref|ZP_06668294.1| competence protein ComFA [Staphylococcus aureus subsp. aureus M809]
 gi|293524169|ref|ZP_06670856.1| putative comf operon protein 1 [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295427328|ref|ZP_06819963.1| competence protein ComFA [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297590318|ref|ZP_06948957.1| helicase [Staphylococcus aureus subsp. aureus MN8]
 gi|49241136|emb|CAG39814.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257272440|gb|EEV04563.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275731|gb|EEV07204.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257279366|gb|EEV09967.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257282285|gb|EEV12420.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284965|gb|EEV15084.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|282314377|gb|EFB44767.1| competence protein ComFA [Staphylococcus aureus subsp. aureus C101]
 gi|282317677|gb|EFB48049.1| competence protein ComFA [Staphylococcus aureus subsp. aureus C427]
 gi|282322622|gb|EFB52944.1| putative comf operon protein 1 [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325787|gb|EFB56095.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327801|gb|EFB58083.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331567|gb|EFB61079.1| competence protein ComFA [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596335|gb|EFC01296.1| putative comf operon protein 1 [Staphylococcus aureus subsp. aureus
           C160]
 gi|283791033|gb|EFC29848.1| putative comf operon protein 1 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290921132|gb|EFD98193.1| putative comf operon protein 1 [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095640|gb|EFE25901.1| competence protein ComFA [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467680|gb|EFF10195.1| competence protein ComFA [Staphylococcus aureus subsp. aureus M809]
 gi|295128716|gb|EFG58347.1| competence protein ComFA [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297576617|gb|EFH95332.1| helicase [Staphylococcus aureus subsp. aureus MN8]
 gi|312438823|gb|ADQ77894.1| helicase [Staphylococcus aureus subsp. aureus TCH60]
 gi|315194368|gb|EFU24760.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 360

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 160/363 (44%), Gaps = 74/363 (20%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++ F  ++ Q  A + I++ +  +  +L  L    G+GKT +    +  A   G    I+
Sbjct: 22  HLSFELSEQQSYASEHIVRAIRMRQTIL--LYAVTGAGKTEMMFQGIQYARRQGDNIAIV 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA------HIIIG 381
           +P                    ++VEI +  +  A   + ++ I H Q+      H ++ 
Sbjct: 80  SP-----------------RVDVVVEI-SKRIKDAFLNEDID-ILHQQSSQQFEGHFVVC 120

Query: 382 T-HALFQDSIQYYKLILVIVDEQHRF------GVQQRLKLTQKATAPHVLLMTATPIPRT 434
           T H L++   Q++  I +  DE   F       +QQ LK + K      + MTATP P+ 
Sbjct: 121 TVHQLYRFK-QHFDTIFI--DEVDAFPLSMDKSLQQALKSSSKVEHA-TIYMTATP-PKQ 175

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPI--------NRIDEVIERLKVVLSEGKKAY 486
           L    L +I +  I + PA R   K++ +P         N+I +++ R+           
Sbjct: 176 L----LSEIPLENIIKLPA-RFHKKSLPVPKYRYFKLNNNKIQKMLYRI----------- 219

Query: 487 WICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            +  QI  ++ +     N  ++++ F S+++   + +  +H    D+ +   ++  +NG 
Sbjct: 220 -LQDQINNQRYTLVFFNNIETMIKTF-SIYKQKITKLTYVHS--EDVFRFEKVEQLRNGQ 275

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI-SSCILLYHPPL 600
             ++  TT++E G  + +  +++I+ A  +    L Q+ GRVGR  E  +  +L +H  +
Sbjct: 276 YDVIFTTTILERGFTMANLDVVVID-AHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGV 334

Query: 601 SKN 603
           S N
Sbjct: 335 SMN 337


>gi|85107121|ref|XP_962312.1| hypothetical protein NCU07670 [Neurospora crassa OR74A]
 gi|21552987|gb|AAM62413.1|AF497975_1 CYT-19 DEAD-box protein precursor [Neurospora crassa]
 gi|28923915|gb|EAA33076.1| predicted protein [Neurospora crassa OR74A]
          Length = 626

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 136/347 (39%), Gaps = 66/347 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---------EAGGQ--------AVIMAPIGILAQQHYE 339
           + Q   G+GKTL  L+ +   +           GG+        A+I++P   LA+Q  E
Sbjct: 116 VAQAKTGTGKTLGFLVPVIQKIITQDPDLAHRFGGKRARSDDIRAIIISPTRELAEQIGE 175

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQY 392
             +K  + T IIV+   G      +   L +      HI++GT     D        I  
Sbjct: 176 EARKLVKGTGIIVQTAVGG---TQKNAMLYKTRQQGCHILVGTPGRLNDLLSDSHSGIDA 232

Query: 393 YKLILVIVDEQHRF---GVQQRLK-----LTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
            +L  +++DE  R    G  + L+     L  +   P   L+ +  IP+ +V  +   ID
Sbjct: 233 PRLSTLVLDEADRMLEVGFNEELRQIINYLPDRKVLPRQTLLYSATIPKDVVGLARSYID 292

Query: 445 ISKI-------TEKPAGRKPIKTVIIPINRIDEV----IERLKVVLSEGK--------KA 485
            +          ++      I   I+P    + +    +E ++  L+E +        KA
Sbjct: 293 KNNFEFVQTVKADEVLTHDRIPQYIVPCKGFENIYPAMLELIEKALNESRTNPEALPFKA 352

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
               P   E   +N  ++ +R     +H   +  I H +++   +    D FKN    +L
Sbjct: 353 IVFLPTTAEVIMAN--AIFKRLQWKFKHIPKTWDI-HSKLTQNARTRAADEFKNARTGIL 409

Query: 546 IATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEE 588
            ++ V   G+D  + S +    I  N E +    +H+L GR GR  +
Sbjct: 410 FSSDVTARGMDFPNVSHVIQTHIPPNREQY----IHRL-GRTGRANK 451


>gi|297847510|ref|XP_002891636.1| hypothetical protein ARALYDRAFT_474250 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337478|gb|EFH67895.1| hypothetical protein ARALYDRAFT_474250 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 392

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 150/345 (43%), Gaps = 67/345 (19%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P++ Q+ A+  IL     K R + I Q   G+GKT +  I++   V       QA++++P
Sbjct: 45  PSEIQQRALVPIL-----KGRDV-IAQAQSGTGKTSMIAISVCQIVNTSSRKVQALVLSP 98

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  + I+    +T I      G        K LER      H + GT     D 
Sbjct: 99  SRELASQTEKTIQVIGAHTNIQAHACIGGKSIGEDIKKLER----GVHAVSGTPGRVYDM 154

Query: 389 ----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPH---VLLMTATPIPRTLVLT 438
               S+Q   + L+++DE       G++ ++    +A  PH   V L++AT +P+     
Sbjct: 155 IKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRAL-PHDIQVCLISAT-LPQ----- 207

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                +I ++TEK     P++ ++ P    DE+         EG K Y++    EE K  
Sbjct: 208 -----EILEMTEKFM-TDPVRILVKP----DELT-------LEGIKQYYVDVDKEEWKFD 250

Query: 499 N---------------FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
                           F +  ++ + L E   SS   ++ +HG     +++ +M+ F++ 
Sbjct: 251 TLCDLYGRLIINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDEIMNQFRSF 310

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
             ++LIA+ V   GIDV   S +I  +  +     +H++ GR GR
Sbjct: 311 KSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRI-GRAGR 354


>gi|145349088|ref|XP_001418972.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579202|gb|ABO97265.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 413

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 122/314 (38%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +  +++      QA+++AP   LAQQ  + ++      Q+   
Sbjct: 81  IQQAQSGTGKTATFCAGILQSLDYSVHECQALVLAPTRELAQQIEKVMRALGDYLQVKCH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +   RI     H+I+GT           AL  DSI+ + L     DE 
Sbjct: 141 ACVGGTSV----REDTRILQAGVHVIVGTPGRVYDMLRRRALKSDSIKIFALDEA--DEM 194

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++        P   V + +AT  P  L +T        K   KP        V
Sbjct: 195 LSRGFKDQIYDIFTLLPPKVQVGVFSATLPPEALEITR-------KFMTKP--------V 239

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K       K  W    + +  E+          N R  V+      
Sbjct: 240 RILVKRDELTLEGIKQFYVNVDKEQWKLDTLCDLYETLAITQSVIFANTRRKVDWLTDNM 299

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 300 RARDFTVSATHGDMDQNTRDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 359

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 360 PENYLHRI-GRSGR 372


>gi|146313670|ref|YP_001178744.1| primosome assembly protein PriA [Enterobacter sp. 638]
 gi|145320546|gb|ABP62693.1| replication restart DNA helicase PriA [Enterobacter sp. 638]
          Length = 731

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +  A+  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 220 LLAGVTGSGKTEVYLSVLENALAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 275

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +    R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 276 HSGLNDTERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 329


>gi|320583326|gb|EFW97541.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pichia angusta
           DL-1]
          Length = 533

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 128/336 (38%), Gaps = 56/336 (16%)

Query: 300 GDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL  LI     +          G   +I+ P   LA Q      K+      +
Sbjct: 172 AETGSGKTLAFLIPSVNYILQLPRLGRFEGPYVLILVPTRELALQIEREFSKFASLGFDV 231

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHRF 406
           + +I G+    H  K LER       +II T       L Q  +   +   +++DE  R 
Sbjct: 232 ISLIGGHSYDEHAEK-LER----GVEVIIATPGRLVDCLEQQLVSLDRCFFLVMDEADRM 286

Query: 407 ---GVQQRLK-----LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK------- 451
              G +  L      L   +  PH  L +  P   T++ T+     I KI+ K       
Sbjct: 287 IDMGFENDLNKILESLPDGSENPH-YLGSGEPKRTTMMFTATMPPQIEKISAKYLKNPGT 345

Query: 452 ------PAGRKPIKTVIIPINRIDEV-IERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
                       ++   I ++  DE  ++ L+ VL+ G  +  I   +      NFR   
Sbjct: 346 VMVGEVGGAVDSVRQEAIQVDDSDEKRLQMLQKVLTRGIYSPPIIIFV------NFRKTC 399

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           E      E    +   +HG  +   +E  +   K G   +L+AT V   GID+ D S+++
Sbjct: 400 EMVAEFLEQLGFNAVTMHGSKTQEQREYAIQQIKEGRSDILVATDVAGRGIDIPDVSLVV 459

Query: 565 ----IENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
                +N E +     H++ GR GR  +  + I  +
Sbjct: 460 NFQMAKNIEDY----THRI-GRTGRAGKEGTAITFW 490


>gi|307824791|ref|ZP_07655014.1| primosomal protein N' [Methylobacter tundripaludum SV96]
 gi|307734149|gb|EFO05003.1| primosomal protein N' [Methylobacter tundripaludum SV96]
          Length = 743

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 135/312 (43%), Gaps = 41/312 (13%)

Query: 148 SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLPEWIEKDLLQKK-SFPSIAE 204
           S+  + PL E V+S    +++   K ++++A  R  L    + I+ +LL++     S+ E
Sbjct: 95  SRYYHHPLGE-VFSAAFPVALRQGKSVVIQAEKRYALTDAGKAIDSELLKRTPKQKSVLE 153

Query: 205 AFNI-IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263
            F    H+  +A+  EW      R +  +L+  Q+  L    +F              ++
Sbjct: 154 KFQAHQHSLSEAELSEWNE--NWRTSVKQLVDRQLLQLAASSEFG----------ASASE 201

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            I+RN        Q++AI  +   + Q    L  L+G  GSGKT V +  +   +E G Q
Sbjct: 202 SIIRNTALQCNPQQQAAITAVCDSLGQFGVFL--LEGVTGSGKTEVYMQIIRTVLERGQQ 259

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   L  Q  E   ++ Q   + + I    +    R  A   +  G+  I++GT 
Sbjct: 260 VLVLLPEITLTPQLEE---RFRQRFTVSIAISHSKLTDRQRACAWLTMQRGECSILLGTR 316

Query: 384 ALFQDSIQYYKLILVIVDEQH--RFGVQQRLKLTQKATA---------PHVLLMTATPIP 432
           +     ++   LI  I+DE+H   F  Q+  + + +  A         P VLL +ATP  
Sbjct: 317 SALFTPLKNPGLI--ILDEEHDASFKQQEGFRFSARDVAVVRGKLLNIP-VLLGSATP-- 371

Query: 433 RTLVLTSLGDID 444
               L SL ++D
Sbjct: 372 ---ALESLHNVD 380


>gi|167761544|ref|ZP_02433671.1| hypothetical protein CLOSCI_03955 [Clostridium scindens ATCC 35704]
 gi|167661210|gb|EDS05340.1| hypothetical protein CLOSCI_03955 [Clostridium scindens ATCC 35704]
          Length = 622

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           +N   E F  S+   H  +SD++++   D F     ++++AT    +GID  D   +I  
Sbjct: 254 YNLRKEGF--SVTRYHAGLSDMERKENQDDFIYDRRQIMVATNAFGMGIDKSDVRFVIHY 311

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           N     +   +Q  GR GR  E S CIL Y P    +  T    ++N ED
Sbjct: 312 NMPK-NMESYYQEAGRAGRDGEPSDCILYYEP---MDVRTNRFFIENNED 357


>gi|154498953|ref|ZP_02037331.1| hypothetical protein BACCAP_02945 [Bacteroides capillosus ATCC
           29799]
 gi|150271793|gb|EDM99019.1| hypothetical protein BACCAP_02945 [Bacteroides capillosus ATCC
           29799]
          Length = 420

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           N L   F + +A  H  M    ++     F  G  ++++ATT   +G+DV D  ++I   
Sbjct: 263 NYLSAQFPNQVAKCHAYMDSDKRQKNELKFIGGKKRIMVATTAFGMGVDVPDIRLVI--- 319

Query: 568 AEHFGLA----QLHQLRGRVGRGEEISSCILLY 596
             HF L       +Q  GR GR  E S C+LLY
Sbjct: 320 --HFNLPLSVIDYYQQIGRAGRDGEKSRCVLLY 350


>gi|156095410|ref|XP_001613740.1| DEAD-box subfamily ATP-dependant helicase [Plasmodium vivax SaI-1]
 gi|148802614|gb|EDL44013.1| DEAD-box subfamily ATP-dependent helicase, putative [Plasmodium
           vivax]
          Length = 816

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 9/83 (10%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFG 572
           S  I+ G+MS+ ++++ +D+FK G  + LI T V   GID+ +   +II    +N   F 
Sbjct: 607 SCVILKGKMSNTERKNNLDAFKKGEVRFLICTDVAARGIDIQNLRYLIIMTLSDNINSF- 665

Query: 573 LAQLHQLRGRVGRGEEISSCILL 595
               H++ GRVGR  + S CI+L
Sbjct: 666 ---FHKI-GRVGRDGKNSLCIVL 684


>gi|158298823|ref|XP_318978.3| AGAP009863-PA [Anopheles gambiae str. PEST]
 gi|157014071|gb|EAA43551.3| AGAP009863-PA [Anopheles gambiae str. PEST]
          Length = 404

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q  + +       +    
Sbjct: 72  IAQAQSGTGKTATFSIAILQQIKTEIPDCQALILAPTRELASQIQKVVISLGDFLKAQCH 131

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRF-- 406
              G     + R  + R+  G  HI++GT     D I     Q   + + ++DE      
Sbjct: 132 ACIGG---TNVRDDMRRLEQG-CHIVVGTPGRVHDMISRNVLQPKNIKMFVLDEADEMLS 187

Query: 407 -GVQQRLK-LTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + +++ + QK  A   V+L++AT +P           D+ ++++    R P+K   I
Sbjct: 188 RGFKDQIQDVFQKLPADVQVILLSAT-MP----------ADVLEVSQHFM-RNPVK---I 232

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++    + K   W    + +  ++          N R  V++       
Sbjct: 233 LVKKEELTLEGIRQFYVDVKYEDWKIGTLCDLYDTLSITQAVIFCNTRRKVDQLTEQMTE 292

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            T +++ +HG M   D++ +M  F+ G+ ++LI T ++  GIDV   S++I
Sbjct: 293 KTFTVSAMHGDMEQRDRDLIMKQFRTGSSRVLITTDLLARGIDVQQVSLVI 343


>gi|15895945|ref|NP_349294.1| DNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15025719|gb|AAK80634.1|AE007766_7 RecQ protein, superfamily II DNA helicase [Clostridium
           acetobutylicum ATCC 824]
 gi|325510097|gb|ADZ21733.1| RecQ protein, superfamily II DNA helicase [Clostridium
           acetobutylicum EA 2018]
          Length = 714

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 22/222 (9%)

Query: 386 FQDSIQYYKLILVIVDEQH---RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           F+++I+   + +V +DE H   ++G     +++ K   P + +    PI      T+  +
Sbjct: 123 FRNAIKDLTISMVAIDEAHCVSQWG--HDFRVSYKRIVPFINIFDKRPIVAAFTATATDE 180

Query: 443 I--DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
           +  DI  + E     K     I   +R D +     +V +E K  + I   + + KE + 
Sbjct: 181 VKKDIINLLE----LKEPNCFITGFDR-DNLF--FSIVKNENKFDF-ITKYLSKHKELSG 232

Query: 500 --FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             + +  +  +SLH+   S   S+   H  M D ++    D F     KL+IAT    +G
Sbjct: 233 IIYAATRKEVDSLHQKLISQGYSVGKYHAGMGDKERSESQDLFLYDETKLMIATNAFGMG 292

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           ID  +   +I  N     L   +Q  GR GR  E S CI+L+
Sbjct: 293 IDKSNVRFVIHYNMPK-NLESYYQEAGRAGRDGEKSECIILF 333


>gi|322412436|gb|EFY03344.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 447

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 131/313 (41%), Gaps = 27/313 (8%)

Query: 302 VGSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +       +A  Q VI AP   LA Q ++  K+  +++   + + T  
Sbjct: 47  TGSGKTHTFLLPIFEKLDEAKAEVQVVITAPSRELATQIFDACKQIAKHSPKDIRL-TNY 105

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLK 413
           +    + + +E++   Q HI+IGT     D ++      +K    +VDE         L 
Sbjct: 106 VGGTDKLRQIEKLKSSQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLD 165

Query: 414 LTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
              K  A       +L+ +AT IP+ L         + K    P   + IKT  +  + I
Sbjct: 166 TVDKIAASLPKSVQILVFSAT-IPQKLQPF------LKKYLSNPVIEQ-IKTETVIADTI 217

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRM 525
           D  +   K     G+    I   ++      F +  ER + LH    ++   +A IHG +
Sbjct: 218 DNWLVSTKGRDKNGQ-ILEILKTMQPYMAMLFVNTKERADDLHAFLVANGLKVAKIHGGI 276

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +++ +M+  K    + ++AT +   GID+   S +I +         +H++ GR GR
Sbjct: 277 PPRERKRIMNQVKKLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGR 335

Query: 586 GEEISSCILLYHP 598
                + I LY P
Sbjct: 336 NGMAGTAITLYQP 348


>gi|296134289|ref|YP_003641536.1| helicase domain protein [Thermincola sp. JR]
 gi|296032867|gb|ADG83635.1| helicase domain protein [Thermincola potens JR]
          Length = 595

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 154/364 (42%), Gaps = 60/364 (16%)

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           E   A+ +LR    S   +QE A   +   +  K R + +++   G+GKT VA   +A A
Sbjct: 237 ETYAAEPVLRCRGLS--AAQEMAAARLEGFIKDKFRQICLVEAVCGAGKTEVAFRGIAQA 294

Query: 318 VEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           ++   + +  AP   ++ + +  F++ +     + +  + G  P            +G+A
Sbjct: 295 LKEEARVLYAAPRRDVITELYPRFVEAF---PGVTITALYGGSP----------TKYGEA 341

Query: 377 HIIIG-THALFQDSIQYYKLILVIVDEQHRF---------GVQQR-LKLTQKATAPHVLL 425
            I +  TH L + +    K  +V +DE   +         GV QR LK   K     ++ 
Sbjct: 342 AITLATTHQLMRFA---GKFDIVFLDEADAYPYRENSVLRGVLQRALKEGSK-----IIY 393

Query: 426 MTATPIPRTLVLTSLGDIDISKI---TEKPAGRKPI----KTVIIPINRIDEVIERLKVV 478
           +TATP P   +   + D   +KI         R P+    K+ II   ++D V+  +  +
Sbjct: 394 ITATPDP--FLYRQVRDRHATKILLPARYHGYRLPVPEILKSYIIRNGQMDPVL--VDWL 449

Query: 479 LSEG----KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
              G     K +   P + +         +  ++ L ++F           +D +++   
Sbjct: 450 FERGIRRQAKVFIFVPHVSD--------TLVVYDILRQYFADDKCACAVHAADPERDRKK 501

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIII--ENAEHFGLAQLHQLRGRVGRGEEISSC 592
            +F+ G    L+ TT++E GI V +A ++++  +N   F    L Q+ GR GR  +  + 
Sbjct: 502 LAFQKGPVPFLVTTTIMERGITVPNAHVLVLWADNERIFTEGALIQMAGRAGRTVDYPAG 561

Query: 593 ILLY 596
            +LY
Sbjct: 562 DVLY 565


>gi|226292640|gb|EEH48060.1| ATP-dependent RNA helicase eIF4A [Paracoccidioides brasiliensis
           Pb18]
          Length = 366

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 128/303 (42%), Gaps = 59/303 (19%)

Query: 294 MLRI-LQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           MLR   Q   G+GKT    I+    V+      QA+I+AP   LAQQ  + +        
Sbjct: 30  MLRCHRQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMS 89

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDE-- 402
           I      G +      KAL+        +++GT     D IQ   L      + ++DE  
Sbjct: 90  IECHACIGGISVRDDMKALQE----GPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEAD 145

Query: 403 ---QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
               H F  Q          +  V+L++AT +P+          D+ ++T K   R P++
Sbjct: 146 EMLSHGFTEQIYDIFQFLPQSTQVVLLSAT-MPQ----------DVLEVTTKFM-RDPVR 193

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE-------------- 505
            ++          ++ ++ L EG K ++I  + EE K      + E              
Sbjct: 194 ILV----------KKAELTL-EGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTR 242

Query: 506 -RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            + + L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S
Sbjct: 243 RKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVS 302

Query: 562 III 564
           ++I
Sbjct: 303 LVI 305


>gi|218658884|ref|ZP_03514814.1| ATP-dependent RNA helicase protein [Rhizobium etli IE4771]
          Length = 329

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 119/292 (40%), Gaps = 39/292 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  +  G +         A+++AP   LA Q    ++   + 
Sbjct: 41  LVSAQTGSGKTVAFGLALAPTLLEGRERFGNAGAPLALVIAPTRELALQVKRELEWLYEM 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399
           T  ++    G M     R+ALER     AHI++GT     D I+   L        +L  
Sbjct: 101 TGAVIASCVGGMDIRSERRALER----GAHIVVGTPGRLCDHIRRNALDMSELKAAVLDE 156

Query: 400 VDEQHRFGVQQRLK-LTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGRKP 457
            DE    G ++ L+ +   A      LM +  +P  +  L      D  +I+     ++ 
Sbjct: 157 ADEMLDLGFREDLEFILDSAPDERRTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQH 216

Query: 458 IKT-----VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           I       ++ P +R + +I  L+    E   A   C         + R+ V    +   
Sbjct: 217 IDIEYRALMVAPSDRENAIINVLRYY--EATNAIVFC---------STRAAVNHLTARFN 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   ++  + G ++  ++   + + ++G  ++ IAT V   GID+    ++I
Sbjct: 266 NRNFAVVALSGELTQNERSHALQAMRDGRARVCIATDVAARGIDLPGLDLVI 317


>gi|28211174|ref|NP_782118.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28203614|gb|AAO36055.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 481

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 140/353 (39%), Gaps = 56/353 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +P+K Q+  I      ++ KN+ + I++   GSGKT    I +   V   E   QA+++ 
Sbjct: 26  NPSKVQQKVIP-----VAIKNKDI-IVKSKTGSGKTASFGIPICENVNLEERKPQALVLT 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L  Q  E IK   +  +I    I G  P   + +ALE     + H+++GT     D
Sbjct: 80  PTRELCIQVKEDIKNIGRFKRIKCSAIFGKQP--FKTQALE--LKQRTHVVVGTPGRTLD 135

Query: 389 -----SIQYYKLILVIVDEQHRFG----VQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
                +I   K+   IVDE         + Q   + +K     V ++ +  IP       
Sbjct: 136 HIERGTIDLDKIKYFIVDEGDEMFNMGFIDQVESIMRKLPKKRVNMLFSATIPEK----- 190

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL--------------KVVLSEGKKA 485
                I K+ EK   + PI   + P    +E I+ +              K++++E   +
Sbjct: 191 -----IEKLCEKYM-KSPIMIEVNPEEFTEEKIQHIYYEIEDKNKFDLLNKILITENPDS 244

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             I  + +E         V +   L E+       +HG M    +  +M+ FK G    L
Sbjct: 245 SIIFCRTQEN--------VNKLAKLMENKDYPCKALHGGMMQDKRIDIMNRFKRGEFMFL 296

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +AT +   GIDV + + II  +        +H+  GR GR       I L  P
Sbjct: 297 VATDLAARGIDVENVTHIINYDIPMEKENYVHRT-GRTGRAGREGCAISLVTP 348


>gi|307204462|gb|EFN83169.1| ATP-dependent RNA helicase DDX42 [Harpegnathos saltator]
          Length = 770

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 130/318 (40%), Gaps = 39/318 (12%)

Query: 302 VGSGKTLVALIAMAAAV------EAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   +  M   +      +AG     +I+AP   L+QQ Y+  KK+ +   I V 
Sbjct: 300 TGSGKTAAFIWPMLVHIMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVC 359

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
              G   +  + KALE      A I++ T     D     +    ++  +++DE  R   
Sbjct: 360 CCYGGGSKWEQSKALE----SGAEIVVATPGRMIDLVKMKATNLIRVTFLVLDEADRMFD 415

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT--- 460
            G + +++       P    LL +AT   R   L     +D  +I +   G         
Sbjct: 416 MGFEPQVRSICNHVRPDRQTLLFSATFKKRVEKLARDVLMDPVRIVQGDVGEANTDVTQH 475

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           VI+   P  + + +++ L   LS G    ++  ++  ++ +N   + E F+ L       
Sbjct: 476 VIMFHNPGGKWNWLLQNLVEFLSAGSLLIFVTKKLNAEELANNLKLKE-FDVL------- 527

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
             ++HG M  I++  V+ +FK      L+AT V   G+D+     +I  +         H
Sbjct: 528 --LLHGDMDQIERNKVITAFKKKDVSTLVATDVAARGLDIPHIKTVINYDVARDIDTHTH 585

Query: 578 QLRGRVGRGEEISSCILL 595
           ++ GR GR  E  +   L
Sbjct: 586 RI-GRTGRAGEKGTAYTL 602


>gi|303228560|ref|ZP_07315388.1| primosomal protein N' [Veillonella atypica ACS-134-V-Col7a]
 gi|302516807|gb|EFL58721.1| primosomal protein N' [Veillonella atypica ACS-134-V-Col7a]
          Length = 727

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 7/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q+   + I Q M  ++    +L G  GSGKT + L A A  +  G  A+I+ P  IL
Sbjct: 200 TDAQQIVYEPIKQMMDLESYNTFLLHGVTGSGKTQIYLKAAARCIGKGKTAIILVPEIIL 259

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
             Q    ++++       V +    +  + R    ERI    +HIIIG   A+F  +   
Sbjct: 260 TDQ---IVRRFVSTFGDEVVVFHSKLTISERNNNWERIRRKDSHIIIGARSAVFAPA--- 313

Query: 393 YKLILVIVDEQHRFGVQQ 410
             + L+++DE+H    +Q
Sbjct: 314 EDIGLIVLDEEHDTSYKQ 331



 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 27/135 (20%)

Query: 488 ICPQIEEKKESNFRSVVERFNS-LHEHFTSSIAIIHGRMSDIDK---------ESVMDSF 537
           +CP+   K+   F S  ++    L  HF  +      R++ +D+         E ++  F
Sbjct: 480 VCPKCHSKRIKFFGSGTQKVEEELRRHFKGA------RIARLDQDVTKHKDMGEEILQDF 533

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF-----------GLAQLHQLRGRVGRG 586
            N    +L+ T ++  G D  D + + I  A+                 L Q  GR GRG
Sbjct: 534 GNHKYDILLGTQMVSKGHDFKDVTAVGILTADSVLNIPVYSASERAFDLLTQTSGRAGRG 593

Query: 587 EEISSCILLYHPPLS 601
           +++ S ++  + PL+
Sbjct: 594 DKVGSVVIQTYNPLN 608


>gi|254416593|ref|ZP_05030344.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes
           PCC 7420]
 gi|196176559|gb|EDX71572.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes
           PCC 7420]
          Length = 1053

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 132/347 (38%), Gaps = 62/347 (17%)

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILA----QQHY 338
           LQ + Q   +L  L     SGKTL  L+ +     +     A+ + P+  LA    +Q +
Sbjct: 270 LQALRQGGDIL--LSTPTASGKTLAFLLPILETCLSNPHATALFIFPLKALAVDQLRQIH 327

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL--------FQDSI 390
           + I    +  +I V ++TG++P A R K LE+       II  T  L        F+   
Sbjct: 328 DIIDLIPKFQRINVVMLTGDVPMAERIKLLEQ----SPQIICITPDLLHHQLFKVFKPQW 383

Query: 391 QYYKLIL-----VIVDEQHRF---------GVQQRLKLT------QKATAPHVLLMTATP 430
           Q ++L L     +++DE H +          + +RL+L             H+       
Sbjct: 384 QSWQLFLRNLRYLVIDEAHTYRGSFGAHFANLMRRLRLAIDQSGGDSTQLQHIFATATIG 443

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS---EGKKAYW 487
            P  L  T  G      + E        +T +         ++   +VLS   +G K   
Sbjct: 444 NPGELAETFSGRQGNLSLIENSGAATAARTTLCLAPSKYANMDSCAIVLSWLEQGLKGIV 503

Query: 488 ICPQIEEKKESNFR-SVVERFNSLHEHFT--------SSIAIIHGRMSDIDKESVMDSFK 538
            C         N R S+    N + EH          S + I +G +    +  ++    
Sbjct: 504 FC---------NSRISLKSLLNQIQEHLEQRGQGYLKSQVRIFYGSLKSHHRRQIIQQLS 554

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            G   +++AT+ +E GID+ +    ++       L QL Q +GR GR
Sbjct: 555 AGEISIILATSALEAGIDIPELDCCLLRGYPG-SLMQLRQRQGRAGR 600


>gi|195579916|ref|XP_002079802.1| GD24145 [Drosophila simulans]
 gi|194191811|gb|EDX05387.1| GD24145 [Drosophila simulans]
          Length = 641

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 146/363 (40%), Gaps = 54/363 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------------ 320
           PT  Q  AI   LQ     NR + I   + GSGKTL  LI + + +++            
Sbjct: 236 PTPIQRQAIPIGLQ-----NRDI-IGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQ 289

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+IMAP   LAQQ  E   K+ Q   I   ++ G +    R +   R+  G   I+I
Sbjct: 290 GPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGL---SREEQGFRLRLG-CEIVI 345

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKL---------TQKAT 419
            T     D ++   L+L     +++DE  R         VQ+ L+          T++A 
Sbjct: 346 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAE 405

Query: 420 APHVLL---MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               L+    T     +T++ T+     + ++  +   R+P    I  + +  E  E++ 
Sbjct: 406 DETKLMENFYTKKKYRQTVMFTATMPPAVERLA-RTYLRRPATVYIGSVGKPTERTEQIV 464

Query: 477 VVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            ++ E  K   +   +  K +       N +   +      E    +   +HG      +
Sbjct: 465 YMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQR 524

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E  + + K+G   +L+AT V   GID+ D S++I  +         H++ GR GR  +  
Sbjct: 525 EYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRI-GRTGRAGKTG 583

Query: 591 SCI 593
             I
Sbjct: 584 CAI 586


>gi|195171504|ref|XP_002026545.1| GL21821 [Drosophila persimilis]
 gi|194111461|gb|EDW33504.1| GL21821 [Drosophila persimilis]
          Length = 812

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 134/322 (41%), Gaps = 47/322 (14%)

Query: 302 VGSGKT-------LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT       L+ L+         G   +I+AP   L+ Q Y   KK+ +   I V 
Sbjct: 321 TGSGKTAAFIWPLLMHLMDQRELKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVV 380

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRF-- 406
              G   +  + KALE+     A I++ T     D ++       ++  +++DE  R   
Sbjct: 381 CCYGGGSKWEQSKALEQ----GAEIVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFH 436

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPR--TLVLTSLGD-IDISKITEKPAGRKPIKT 460
            G + +++       P    LL +AT   R   L    L D + I +     A +   ++
Sbjct: 437 MGFEPQVRSICNHVRPDRQTLLFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQS 496

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           V +   P+ + + ++  L   LSEG    ++  + + +  +N   +V+  N L       
Sbjct: 497 VYVFPNPLQKWNWLLCHLVKFLSEGSVLIFVTKKADAETVAN-NLLVKEHNCL------- 548

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-- 575
             ++HG M   D+  V+  FK   C +L+AT V   G+D     I  I N  ++ +A+  
Sbjct: 549 --LLHGDMDQADRNKVITQFKRKECDILVATDVAARGLD-----IPHIRNVVNYDIARDI 601

Query: 576 -LHQLR-GRVGRGEEISSCILL 595
             H  R GR GR  E  +   L
Sbjct: 602 DTHTHRIGRTGRAGEKGNAFTL 623


>gi|124265326|ref|YP_001019330.1| replication restart DNA helicase PriA [Methylibium petroleiphilum
           PM1]
 gi|124258101|gb|ABM93095.1| replication restart DNA helicase PriA [Methylibium petroleiphilum
           PM1]
          Length = 715

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 22/172 (12%)

Query: 273 PTKSQESAIKDILQDM--SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP- 329
           P  S E A   +LQ +  S  +  + +L G  GSGKT + L      VEAG QA+++ P 
Sbjct: 165 PAPSAEQA--QVLQALAASAGDAPVTLLHGSTGSGKTEIYLREAQRVVEAGRQALVLVPE 222

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQD 388
           I +  Q    F+ ++      +V + +G  P A R K    +  G+A +++GT  A+F  
Sbjct: 223 INLTPQLEERFLARFPGRR--VVSLHSGLTP-ARRLKHWLMVLLGEADLVLGTRLAVF-- 277

Query: 389 SIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP 430
                +L LVIVDE+H          R+  +    +  +     VLL +ATP
Sbjct: 278 -APLPRLGLVIVDEEHDPSYKQQEGARYSARDLAVVRGRVEGVPVLLGSATP 328


>gi|219668952|ref|YP_002459387.1| ATP-dependent DNA helicase RecQ [Desulfitobacterium hafniense
           DCB-2]
 gi|219539212|gb|ACL20951.1| ATP-dependent DNA helicase RecQ [Desulfitobacterium hafniense
           DCB-2]
          Length = 728

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           H  MSD+D++   ++F      L++AT    +GID  +   +I  N     +   +Q  G
Sbjct: 260 HAGMSDLDRQKAQEAFLYDKTPLMVATNAFGMGIDKSNVRFVIHYNMPK-NMEAYYQEAG 318

Query: 582 RVGRGEEISSCILLYHP 598
           R GR  E + CILL+ P
Sbjct: 319 RAGRDGEPAECILLFAP 335


>gi|16768302|gb|AAL28370.1| GM01081p [Drosophila melanogaster]
          Length = 641

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 146/363 (40%), Gaps = 54/363 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------------ 320
           PT  Q  AI   LQ     NR + I   + GSGKTL  LI + + +++            
Sbjct: 236 PTPIQRQAIPIGLQ-----NRDI-IGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQ 289

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+IMAP   LAQQ  E   K+ Q   I   ++ G +    R +   R+  G   I+I
Sbjct: 290 GPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGL---SREEQGFRLRLG-CEIVI 345

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKL---------TQKAT 419
            T     D ++   L+L     +++DE  R         VQ+ L+          T++A 
Sbjct: 346 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAE 405

Query: 420 APHVLL---MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               L+    T     +T++ T+     + ++  +   R+P    I  + +  E  E++ 
Sbjct: 406 DETKLMENFYTKKKYRQTVMFTATMPPAVERLA-RTYLRRPATVYIGSVGKPTERTEQIV 464

Query: 477 VVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            ++ E  K   +   +  K +       N +   +      E    +   +HG      +
Sbjct: 465 YMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQR 524

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E  + + K+G   +L+AT V   GID+ D S++I  +         H++ GR GR  +  
Sbjct: 525 EYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRI-GRTGRAGKTG 583

Query: 591 SCI 593
             I
Sbjct: 584 CAI 586


>gi|86142428|ref|ZP_01060938.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis
           MED217]
 gi|85831180|gb|EAQ49637.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis
           MED217]
          Length = 442

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 135/314 (42%), Gaps = 54/314 (17%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGK    L           +A+I+ P   LA Q  + +K+Y++ T I   +I G + Q
Sbjct: 67  VGSGKGKRKL-----------KALIVTPTRELAIQIEDNVKEYSKYTGIQSTVIFGGVKQ 115

Query: 362 AHR----RKALERIAHGQAHIIIGTHALFQD--SIQYYKLILVIVDEQHRFGVQQRLKLT 415
           A +    RK ++ +      ++      F D  +I+Y  L+L   D+    G    +K  
Sbjct: 116 ASQVQAMRKGVDVLTATPGRLLDLVKQGFIDLGTIEY--LVLDEADQMLDMGFIHDIKKI 173

Query: 416 QKATAPH---VLLMTATPIPRTLVLTS---LGDID-ISKITEKPAGRKPIKTVIIPINRI 468
            K   PH    L  +AT +P+ ++  S   LGD + +S   EKP              R+
Sbjct: 174 LK-LVPHKRQSLFFSAT-MPKEIIDLSKLILGDFEKVSIAPEKPTA-----------ERV 220

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIH 522
           D+ +      +S+  KA  +   I+ +K       S  +    +   + +      A IH
Sbjct: 221 DQAV----YFVSKKNKAKLLKHLIDTEKPETLLVFSRTKHGANKIVKVLDKAGIQAAAIH 276

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G  S   ++  +++FK G   +L+AT +   GIDV +  ++I  +  +     +H++ GR
Sbjct: 277 GNKSQAARQKALNAFKEGKLHVLVATDIAARGIDVSELELVIQYDLPNVPETYVHRI-GR 335

Query: 583 VGR----GEEISSC 592
            GR    G  IS C
Sbjct: 336 TGRAKASGIAISFC 349


>gi|332025289|gb|EGI65460.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
          Length = 706

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 144/337 (42%), Gaps = 41/337 (12%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G   +I+AP   LAQQ     + +  ++ I   
Sbjct: 153 TGSGKTLAYILPATVHINHQPRLSRGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNT 212

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR--- 405
            I G  P+  + + LER       I I T       L + +    +   +++DE  R   
Sbjct: 213 CIFGGSPKGPQARDLER----GVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLD 268

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKP 457
             F  Q R  + Q      VL+ +AT  P+ +       L+    I+I  +T   A    
Sbjct: 269 MGFEPQIRKIIEQIRPDRQVLMWSAT-WPKEVQALAEDFLSDYIQINIGSLTL--AANHN 325

Query: 458 IKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           I+  I+ I +  E   +L  +L E   ++   +   +E KK+     V +   ++     
Sbjct: 326 IRQ-IVEICQEHEKEMKLSQLLREIGTERGSKMIIFVETKKK-----VDDITKTIKREGW 379

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           S+I+I HG  S  +++ V+  F+NG   +L+AT V   G+DV D   +I  +  +     
Sbjct: 380 SAISI-HGDKSQPERDYVLSEFRNGKTMILVATDVAARGLDVEDVKYVINFDYPNSSEDY 438

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +H++ GR GR +   +    + P  ++ +   ++VL+
Sbjct: 439 IHRI-GRTGRCQSAGTAYAYFTPNNARQAKELIAVLE 474


>gi|307316356|ref|ZP_07595800.1| primosomal protein N' [Sinorhizobium meliloti AK83]
 gi|306898196|gb|EFN28938.1| primosomal protein N' [Sinorhizobium meliloti AK83]
          Length = 734

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 9/130 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q+ A  D+L  + ++   + ++ G  GSGKT V   A+AA + AG Q +I+ P I + A 
Sbjct: 206 QKQAAADLLAAVEERKFSVSLIDGITGSGKTEVYFEAIAATLRAGKQVLILLPEIALTAS 265

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               F++++             ++    R K   ++  GQ  ++ G   ALF   + +  
Sbjct: 266 ----FLERFQDRFGAKPAEWHSDLAPRMREKVWRQVTTGQVRVVAGARSALF---LPFED 318

Query: 395 LILVIVDEQH 404
           L L+IVDE+H
Sbjct: 319 LGLIIVDEEH 328


>gi|282863805|ref|ZP_06272863.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282561506|gb|EFB67050.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 492

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 138/329 (41%), Gaps = 36/329 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  +   A+++ P   LAQQ  + +  Y ++ ++ +
Sbjct: 106 RGRTGSGKTLAFGLALLARTAGRRAEPRQPLALVLVPTRELAQQVTDALTPYARSVRLRL 165

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHR-- 405
             + G M    +  AL     G + I++ T    +D I     +  ++ + ++DE  +  
Sbjct: 166 AAVVGGMSIGRQASALR----GGSEIVVATPGRLKDLIDRGDCRLDQVDITVLDEADQMA 221

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIK 459
              F  Q    L Q +     +L +AT + R    LV   L D  +  +    A    ++
Sbjct: 222 DMGFMPQVTALLDQVSPGGQRMLFSAT-LDRNVDLLVRRYLTDPVVHSVDPSSATVTTME 280

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
             ++ ++  D+     ++   EG+   ++          + +  V+R      +     A
Sbjct: 281 HHVLHVHGADKQATTTEIAAREGRVIMFL----------DTKHAVDRLTRDLLNSGVRAA 330

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG  S   +   +  FK+G   +L+AT V   GI V +  +++  +        LH+ 
Sbjct: 331 ALHGGKSQPQRTRTLAQFKSGHVTVLVATNVAARGIHVDNLDLVVNVDPPTDHKDYLHR- 389

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            GR  R  E  S + L  P   + S TRL
Sbjct: 390 GGRTARAGESGSVVTLVTPD-QRRSMTRL 417


>gi|224756704|gb|ACN62375.1| ATP dependent RNA helicase Hel61p [Leishmania tarentolae]
          Length = 545

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 133/350 (38%), Gaps = 57/350 (16%)

Query: 302 VGSGKTLV----ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            GSGKT+     AL       +     +++AP   L QQ  +  +        + E   G
Sbjct: 139 TGSGKTVAFAVPALAGFKPNPDGTPSVLVLAPTRELVQQTTKVFQNLGCGQVRVCEAYGG 198

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---GVQ 409
               A R     R+ +G   +++      +D      +    L  ++ DE  R    G Q
Sbjct: 199 ----APRDLQARRLRNG-CDVLVACPGRLKDFLDGGEVSLRNLSFLVFDEADRLLDMGFQ 253

Query: 410 QRLK----LTQKATAPHVLLMTATPIPRT---LVLTSLGDIDISKITEKPAG-----RKP 457
             L         A+ P  ++ +AT  P +   +V   L D D   I    AG      + 
Sbjct: 254 VHLDEIMAYLDSASHPQTMMWSAT-WPESVQEMVRKYLSD-DRVLIRAGTAGAGLQVNEH 311

Query: 458 IKTVIIPINRIDEVIERLKVVLSEG-----KKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           IK  +I      E IE+L +++ +G          I  + +   E+  R+   R      
Sbjct: 312 IKQELIFCRTFTERIEKLGLLVEDGTIDDNSDKLIIFVERQADTENTARAFSHRLGI--- 368

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
             T  +  IHG +S   ++ VM  FKN   +LL+AT V   G+D+ D + ++   A    
Sbjct: 369 -DTRYVGAIHGGLSQRQRDRVMSMFKNNQIRLLVATDVASRGLDIPDVTCVVNFQAPKTI 427

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
            +  H++ GR GR     +            +YT LS     EDG L  E
Sbjct: 428 DSYCHRI-GRTGRAGRTGT------------AYTFLS----EEDGGLATE 460


>gi|29346564|ref|NP_810067.1| ATP-independent RNA helicase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29338460|gb|AAO76261.1| ATP-independent RNA helicase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 444

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 147/362 (40%), Gaps = 52/362 (14%)

Query: 260 KIAQKILRNIPFSPTKS-QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +I Q  L+N+      S QE+A++   Q   +K+    IL    GSGKTL  L+ +   +
Sbjct: 6   EIIQSALQNLKIESLNSMQEAALE---QGTGRKDV---ILLSPTGSGKTLAYLLPLLLTL 59

Query: 319 EAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           +      Q +I+ P   LA Q     +  +  T        G  P A  +K+   IA   
Sbjct: 60  KPNDDSVQVLILVPSRELALQIDTVFR--SMGTSWKTCCCYGGHPIAEEKKS---IAGNH 114

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             II+GT     D +            LI+   D+   FG    +   +TQ       +L
Sbjct: 115 PAIILGTPGRITDHLSKGNFDPETIETLIIDEFDKSLEFGFHDEMAEIITQLPGLKKRML 174

Query: 426 MTATP---IPRTLVLTSLGDID-ISKITEKPAGRKPIKTVIIPI-NRIDEVIERLKVVLS 480
           ++AT    IP+   L     +D + + TE+   R  +  V+ P  ++ID +   L  + S
Sbjct: 175 LSATDAEEIPQFTGLNRTVKLDFLPEATEEQENRLKLMKVLSPSKDKIDTLYNLLCSLGS 234

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
                +            N R  V+R + L E         HG M   D+E  +  F+NG
Sbjct: 235 SSSIVF-----------CNHRDAVDRVHKLLEDKKLLAERFHGGMEQPDRERALYKFRNG 283

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQLHQLRGRVGRGEEISSCILL 595
           +C +LI+T +   G+D+ +   II     H+ L     A  H+  GR  R +   +  L+
Sbjct: 284 SCHVLISTDLAARGLDIPEIEHII-----HYHLPVNEEAFTHR-NGRTARWDATGTSYLI 337

Query: 596 YH 597
            H
Sbjct: 338 LH 339


>gi|327467234|gb|EGF12738.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK330]
          Length = 447

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 150/358 (41%), Gaps = 44/358 (12%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAV 318
           Q+ LR++ F   T  QE  I  +L       R L + +   GSGKT   L+ +  M    
Sbjct: 13  QEALRDLNFVEATPVQEKLIPVVLS-----GRDL-VGESKTGSGKTHTFLLPIFQMLDEE 66

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               QAVI AP   LA Q Y+  ++       +I V    G   +A +   LE     Q 
Sbjct: 67  ADSVQAVITAPSRELAAQIYQAARQLASFSEREIRVANYVGGTDKARQIGKLE---SSQP 123

Query: 377 HIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           HI+IGT     D ++   L +      +VDE         L +   AT   +    A  +
Sbjct: 124 HIVIGTPGRIYDLVESGDLAIHKAKTFVVDE-----ADMTLDMGFLATVDKI----AGRL 174

Query: 432 PRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGK---- 483
           P+ L           K+  +P  +K    P+   I     I + IE   ++ ++G+    
Sbjct: 175 PKDLQFLVFSATIPQKL--QPFLKKYLSNPVIEQIKTKTVIADTIENW-LLSTKGRDKNA 231

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           + Y I   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN 
Sbjct: 232 QIYQISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + ++AT +   GID+   S +I +         +H++ GR GR   + + I LY P
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLLGTAITLYQP 348


>gi|313500721|gb|ADR62087.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida BIRD-1]
          Length = 443

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 128/285 (44%), Gaps = 31/285 (10%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHI 378
           +A+++ P   LA+Q +  +++Y +N  +    + G +   PQ  R R+ ++ +      +
Sbjct: 76  RALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMRLRRGVDLLVATPGRL 135

Query: 379 IIGTHALF-QDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP---HVLLMTATPI 431
           +     LF Q+++++ ++  +++DE  R    G  + L+ +  A  P     LL +AT  
Sbjct: 136 L----DLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQ-SVYAALPRKRQTLLFSATFS 190

Query: 432 PRTLVLTSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            +  +L  L   D   I   P  A    +K  ++P+++      +  +     +K  W  
Sbjct: 191 DQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKK----RKADLFCHLLRKQRWKQ 246

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +  K  +    +VER   L E   +    IHG      ++  +DSFK    ++L+AT 
Sbjct: 247 VLVFAKTRNGVDQLVERL--LAEGVNADG--IHGDRPQATRQRALDSFKAREVQVLVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
           V   G+D+ D  +++  +        +H++ GR GR    GE IS
Sbjct: 303 VAARGLDIDDLPLVVNLDLPIVAEDYVHRI-GRTGRAGNKGEAIS 346


>gi|238917309|ref|YP_002930826.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
 gi|238872669|gb|ACR72379.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
          Length = 571

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 135/315 (42%), Gaps = 47/315 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   G+GKT    I M   +       QA+++ P   LA Q  E I+K  +  + I V
Sbjct: 42  IGQAQTGTGKTAAYSIPMLQKINPDVKKPQAIVLCPTRELAVQVAEEIRKLAKYMSDIKV 101

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF- 406
             + G      + K+L+        II+GT     D     ++++  + +VI+DE     
Sbjct: 102 LPVYGGQEIVRQIKSLK----AGVQIIVGTPGRVMDHMRRKTVKFDSVSMVILDEADEML 157

Query: 407 --GVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSL-GDIDISKITEKPAGRKPIKT 460
             G ++ ++  LT+       +L +AT P P   +      D  I K+  K      I  
Sbjct: 158 DMGFREDMETILTETPEERQTVLFSATMPKPIMEIARKFQKDARIIKVVRKELTVSNIDQ 217

Query: 461 V---IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL--HEHFT 515
               + P N+  E++ RL + +   K +   C        +  R V E  + L    +F 
Sbjct: 218 FYYEVRPKNKT-EILSRL-IDIYNPKLSVVFC--------NTKRQVDELISELKGRGYFA 267

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHF 571
             I   HG M    ++ VMD F++G  ++LIAT V   GIDV    I+    + ++ E++
Sbjct: 268 DGI---HGDMKQQQRDRVMDDFRSGKTEILIATDVAARGIDVDGVDIVFNYDLPQDEEYY 324

Query: 572 GLAQLHQLRGRVGRG 586
               +H++ GR GR 
Sbjct: 325 ----VHRI-GRTGRA 334


>gi|238754730|ref|ZP_04616082.1| Primosomal protein N' [Yersinia ruckeri ATCC 29473]
 gi|238707038|gb|EEP99403.1| Primosomal protein N' [Yersinia ruckeri ATCC 29473]
          Length = 732

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+I+ P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENILAQGRQALILVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R  +G+A I+IGT  ALF     + +L ++I+DE+H    +Q+
Sbjct: 277 HSGLNDSERLSVWLRARNGEAAIVIGTRSALF---TPFSRLGVIIIDEEHDSSYKQQ 330


>gi|241148960|ref|XP_002405949.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215493782|gb|EEC03423.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 460

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/335 (20%), Positives = 133/335 (39%), Gaps = 62/335 (18%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++ + +++   
Sbjct: 136 TGSGKTLGYILPAIIHINHQPYLQRGDGPIALVLAPTRELAQQIQQVSSEFGKASRVRST 195

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL----VIVDEQHRFGVQ 409
            + G  P+  + + +ER     + I I T     D ++  K+ L     + D Q      
Sbjct: 196 CVFGGAPKGPQLRDIER----GSEICIATPGRLIDFLEAGKVNLRRCTYLPDCQ------ 245

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD------------IDISKITEKPAGRKP 457
               L   AT P  +   A    R  +  ++G             ID+ + TEK      
Sbjct: 246 ---TLMWSATWPKEVRSLAEEFLRDYIQINIGALQLCANHRILQIIDVCQETEKE----- 297

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
                      D++++  + +L+E +    +  + + K        V+        +   
Sbjct: 298 -----------DKLMKLHQEILNEKENKTIVFAETKRK--------VDDLTRKMRRYGWP 338

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              IHG  +  +++ V++ F++G   +L+AT V   G+DV D   +I  +  +     +H
Sbjct: 339 AICIHGDKTQQERDWVLNEFRSGRAPILVATDVAARGLDVDDVRFVINYDYPNCSEDYIH 398

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           ++ GR  R  +  +    + P  S+ +   +SVL+
Sbjct: 399 RI-GRTARSNKTGTAYTFFTPNNSRQAKELISVLQ 432


>gi|138896049|ref|YP_001126502.1| DEAD-box ATP dependent DNA helicase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134267562|gb|ABO67757.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
           thermodenitrificans NG80-2]
          Length = 436

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 148/348 (42%), Gaps = 40/348 (11%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIM 327
           + PT+ QE  I   L+  S       + Q   G+GKT   L+ +   ++   A  QAVI 
Sbjct: 25  YKPTEIQERIIPRALRGESM------VGQSQTGTGKTHAYLLPIIEKIDPERAEVQAVIT 78

Query: 328 APIGILAQQHYEFIKKYTQ----NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AP   LA Q Y    K T+    +  I+     G      ++KALE++ H Q HI+IGT 
Sbjct: 79  APTRELATQIYHETLKITKFCPKDRMIVARCFIGG---TDKQKALEKL-HVQPHIVIGTP 134

Query: 384 ALFQDSIQYYKLIL-----VIVDEQH---RFG-VQQRLKLTQKATAPHVLLMTATPIPRT 434
               D I+   L +     ++VDE       G +    ++  +      +L+ +  IP  
Sbjct: 135 GRINDFIREQALDVHTARTLVVDEADLMLDMGFITDVDQIAARMPKELQMLVFSATIPEK 194

Query: 435 L---VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           L   +   + +    ++  K    K I+ V+IP+   ++V     V++S     Y     
Sbjct: 195 LKPFLKKYMENPTFIQVEPKQTANKNIEHVLIPLRGREKVKLLYDVLVSYN--PYLAIVF 252

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +  +K ++     E  + L E     + ++HG ++  +++ +M+  ++   + ++AT + 
Sbjct: 253 VNTRKRAD-----EVADQLAEQ-GLKVGVLHGDLTPRERKKMMNQIRDLEFQYVVATDLA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
             GID+   S +I  N E     Q +  R GR  R         +Y P
Sbjct: 307 ARGIDIEGVSHVI--NYELPDDLQFYIHRAGRTARAGYSGIAATIYEP 352


>gi|33603341|ref|NP_890901.1| ATP-dependent RNA helicase DbpA [Bordetella bronchiseptica RB50]
 gi|33577465|emb|CAE34730.1| probable ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 462

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 139/320 (43%), Gaps = 34/320 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + +++  +   N ++
Sbjct: 45  IAQAKTGSGKTAAFGLGVLQNLDVNRLAPQALVLCPTRELADQVAQELRRLARLIPNVKV 104

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR 405
           +   + G    A  R   E +A G  H+++GT    QD     S+    L  +++DE  R
Sbjct: 105 LT--LCGG---AAARPQAESLARG-THLVVGTPGRIQDHLARGSLDLSTLNTLVLDEADR 158

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
             V         A A H       P  R TL+ ++    +I K++ +   R P + + + 
Sbjct: 159 M-VDMGFYDDIAAIASHC------PARRQTLLFSATYPDNIRKLSARFL-RNPAE-IKVE 209

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SI 518
                  IE+L   + EG++   +   +   + ++   F +   R + L E   +   S 
Sbjct: 210 AQHDASRIEQLFFEIDEGQRLDAVAALLAHFRPASTLAFCNTKIRSHDLVERLRAQGISA 269

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             ++G +   +++ ++  F N +C +L+AT V   G+D+ +   +I  +        +H+
Sbjct: 270 QALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVINVDVTKDTEVHVHR 329

Query: 579 LRGRVGRGEEISSCILLYHP 598
           + GR GRG++    + L  P
Sbjct: 330 I-GRSGRGDQKGLALSLCSP 348


>gi|50659095|ref|NP_004719.2| nucleolar RNA helicase 2 [Homo sapiens]
 gi|76803555|sp|Q9NR30|DDX21_HUMAN RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
           protein 21; AltName: Full=Gu-alpha; AltName:
           Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
           RNA helicase II; AltName: Full=RH II/Gu
 gi|31455230|gb|AAH08071.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
 gi|55664208|emb|CAH72377.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
 gi|119574691|gb|EAW54306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Homo
           sapiens]
 gi|261858100|dbj|BAI45572.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
          Length = 783

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 133/340 (39%), Gaps = 63/340 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   +             Q +++AP   LA Q  +     T+ 
Sbjct: 227 IAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITK- 285

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +    ER+ +G   I++GT    +D IQ  KL L     V++DE
Sbjct: 286 -KLSVACFYGGTPYGGQ---FERMRNG-IDILVGTPGRIKDHIQNGKLDLTKLKHVVLDE 340

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTAT------PIPRTLVLTSLGDIDIS 446
             +         V++ L +  K  +   P  LL +AT       + +  + ++   +D+ 
Sbjct: 341 VDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDL- 399

Query: 447 KITEKPAGRKPIKTVIIP---------INRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                  G+K  KT I             R   + + ++V      +    C   +E +E
Sbjct: 400 ------IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQE 453

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +  S +++              +HG +    +E  +  F+NG+  +L+AT V   G+D+
Sbjct: 454 LSQNSAIKQ----------DAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDI 503

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +  ++I  +      + +H+  GR GR      CI  Y 
Sbjct: 504 PEVDLVIQSSPPKDVESYIHR-SGRTGRAGRTGVCICFYQ 542


>gi|331268828|ref|YP_004395320.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum BKT015925]
 gi|329125378|gb|AEB75323.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum BKT015925]
          Length = 377

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 163/358 (45%), Gaps = 40/358 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + ++  + + +L+N    PT  Q  +I  IL++ +       I Q   G+GKTL  L+ +
Sbjct: 8   LGLDSNLIEGLLKNNIKEPTDIQIKSIPLILENKNV------IAQSQTGTGKTLAYLLPL 61

Query: 315 AAAVEAGG---QAVIMAPIGILAQQ-HYEFIK-KYTQNTQIIVEIITGNMPQAHRRKALE 369
              +++     Q +++AP   L  Q H E        N+ I    I G   + + ++ +E
Sbjct: 62  FQKIDSTKREMQVIVLAPTHELVMQIHNEITTLANNSNSNITSCPIIG---EVNIKRQIE 118

Query: 370 RIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF-------GVQQRLKLTQK 417
           ++   + HII+G+       + +  I  + +  +++DE  R         V+  +K T +
Sbjct: 119 KLRE-KPHIIVGSAGRVFELIKKRKISAHTIKTIVLDEGDRLLDKSNLSKVKDVIKTTMR 177

Query: 418 ATAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            T   +LL++AT   RT  +    + D  + K+         I  +       D+ IE L
Sbjct: 178 DT--QLLLVSATISQRTFDVAQDIMKDPKVVKVKASDLINPNISHMYFQCEARDK-IEIL 234

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + +++  K +  I   I +  E +  +   +++ ++ +       I G+ S  D++  +D
Sbjct: 235 RKLIASTKPSRAIVF-INKPTEIDITTSKLQYHKINAYS------ISGKTSKEDRKKAID 287

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            FK+G  ++LIA+ V   G+DV + + I   +     +  LH++ GR GR +++ + +
Sbjct: 288 GFKHGKYQILIASDVAARGLDVENITHIFNLDLPSDSMDYLHRV-GRCGRADKLGTAM 344


>gi|298674218|ref|YP_003725968.1| DEAD/DEAH box helicase domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298287206|gb|ADI73172.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 431

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 130/313 (41%), Gaps = 44/313 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I     V+      Q +++ P   LA Q  + + K  +  +I V 
Sbjct: 45  IGQAQTGTGKTAAFGIPALEKVDRNSKKVQTIVLCPTRELANQVADELNKLARYKKIKVL 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
            I G  P   + KAL +     A I+IGT     D ++ + L        +L   DE   
Sbjct: 105 PIYGGQPIERQIKALNK----GAQIVIGTPGRILDHMERHTLSLDNVKMTVLDEADEMLD 160

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKP-IKTV-- 461
            G ++ ++L          +++  P  R T + ++     I K+T+K       IKTV  
Sbjct: 161 MGFREDIEL----------ILSKLPDKRQTTLFSATMPGPIMKMTKKYQDNPELIKTVHK 210

Query: 462 --IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNFRSVVERFNSLHEHFTS 516
              +P       +E+    + E  K   +C   +    K    F +  +  ++L E   +
Sbjct: 211 KLTVP------QVEQTYFEVKERSKPEALCRLTDFYNIKSSLVFCNTKKGVDNLVETLKT 264

Query: 517 SIAI---IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +   +HG M    ++ VM +FKNG  + L+AT V   GIDV +  ++   +      
Sbjct: 265 RGYLADGLHGDMKQKQRDKVMSNFKNGEIETLVATDVAARGIDVENIEVVFNYDVPQDEE 324

Query: 574 AQLHQLRGRVGRG 586
           + +H++ GR GR 
Sbjct: 325 SYVHRI-GRTGRA 336


>gi|229545940|ref|ZP_04434665.1| ATP-dependent RNA helicase [Enterococcus faecalis TX1322]
 gi|307291362|ref|ZP_07571246.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|229308903|gb|EEN74890.1| ATP-dependent RNA helicase [Enterococcus faecalis TX1322]
 gi|306497593|gb|EFM67126.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|315030003|gb|EFT41935.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
          Length = 452

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 147/346 (42%), Gaps = 41/346 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT+ QE  I  I     QK + + I Q   GSGKT   L+ +   V+      Q VI AP
Sbjct: 28  PTEVQEKLIPII-----QKGKSV-IGQSQTGSGKTHTFLLPLMDKVKPTIDEVQIVITAP 81

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGN-MPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q Y+  ++  + +Q   EI   N +    +++ L ++ H Q H++IGT     D
Sbjct: 82  SRELANQIYQEAQQLARFSQ--PEIRVSNFVGGTDKQRQLNKLKHQQPHVVIGTPGRILD 139

Query: 389 -----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
                +++ +     +VDE         L +   A    +    A  +P  L +      
Sbjct: 140 MMNEQALKVHTAFAFVVDE-----ADMTLDMGFLAEVDQI----AGRLPEKLQMLVFSAT 190

Query: 444 DISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              K+  +P  +K    P+   I P   I E I+   ++ ++GK +  I  Q+       
Sbjct: 191 IPEKL--RPFLKKYLENPVIEHIKPKAVISETIDNW-LISTKGKNSNQIIYQLLTIGHPY 247

Query: 500 ----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F +  +R + + ++       +A IHG ++  +++ VM   +N   + ++AT +  
Sbjct: 248 LAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAA 307

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            GID+   S +I     H     +H++ GR GR     + I LY P
Sbjct: 308 RGIDIEGVSHVINAEVPHELDFFIHRV-GRTGRNGLNGTAITLYSP 352


>gi|66547453|ref|XP_624946.1| PREDICTED: DEAD-box helicase Dbp80 [Apis mellifera]
          Length = 475

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 145/352 (41%), Gaps = 71/352 (20%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P+K QE+A+  +L D  Q      I Q   G+GKT   ++AM + V+      Q + ++
Sbjct: 110 APSKIQETALPTLLADPPQN----MIAQSQSGTGKTAAFVLAMLSRVDTTKNYPQVLCLS 165

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K +     I       +  A R + + R      HIIIGT     D
Sbjct: 166 PTYELAIQTGEVAAKMSAFCNEI------KIKYAVRGEEISRGTKVTEHIIIGTPGKVLD 219

Query: 389 ---SIQYY---KLILVIVDEQHRF----GVQQRLKLTQKA--TAPHVLLMTATPIPRTLV 436
                +++   K+ + ++DE        G Q +     K       ++  +AT  P  + 
Sbjct: 220 WAFKFKFFSLSKISVFVLDEADVMIATQGHQDQCIRIHKQLPRTCQMMFFSATYEPEVMK 279

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              +       I   P        +II + + +E ++ +K       + Y  C  ++EK 
Sbjct: 280 FAEI-------IVNNP--------LIIRLLKEEETLDNIK-------QYYVKCKDLDEKY 317

Query: 497 E--SNFRSVV------------ERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKN 539
              +N   V+            +  N L E  T    ++A++ G ++   + SV+D F+ 
Sbjct: 318 AAITNIYGVITIGQAIIFCHTRKTANWLAEKMTKDGHAVAVLSGELTVEQRISVLDRFRA 377

Query: 540 GTCKLLIATTVIEVGIDVVDASIII------IENAEHFGLAQLHQLRGRVGR 585
           G  K+LI T V+  GIDV   +I++       +N +      LH++ GR GR
Sbjct: 378 GLEKVLITTNVLARGIDVEQVTIVVNFDLPMDQNRQADCETYLHRI-GRAGR 428


>gi|74219920|dbj|BAE40541.1| unnamed protein product [Mus musculus]
          Length = 406

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDLKASQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|13470499|ref|NP_102068.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
 gi|14021241|dbj|BAB47854.1| probable ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
          Length = 527

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 134/312 (42%), Gaps = 47/312 (15%)

Query: 302 VGSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            G+GKT   ++ M   +E G       + +I+ P   LA Q  E   KY +N ++ + ++
Sbjct: 58  TGTGKTASFVLPMLTRLEKGRARARMPRTLILEPTRELAAQVEENFVKYGKNHKLNIALL 117

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---- 406
            G +    + K LER     A ++I T     D  +  KL+L     +++DE  R     
Sbjct: 118 IGGVSFDEQDKKLER----GADVLIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMG 173

Query: 407 ------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLT-----SLGDIDISKITEKPAG- 454
                  + + +  T++      L  +AT  P    LT     +   +++SK        
Sbjct: 174 FIPDIERICEMIPFTRQ-----TLFFSATMPPEITKLTEKFLHAPVRVEVSKAASAATNI 228

Query: 455 -RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            ++ +K+   P ++ + +   +K   +E K A   C +  E        V E F SL ++
Sbjct: 229 TQRLVKSGSKPWDKRETLRNLIKAEDAELKNAIIFCNRKVE--------VSELFRSLLKY 280

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              + A+ HG M    +  ++ +F++G  + L+A+ V   G+D+ D S +   +      
Sbjct: 281 DFDAGAL-HGDMDQRARMQMLANFRDGKLRYLVASDVAARGLDIPDVSHVFNYDVPIHAE 339

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 340 DYVHRI-GRTGR 350


>gi|1170508|sp|P41381|IF4A8_TOBAC RecName: Full=Eukaryotic initiation factor 4A-8; Short=eIF-4A-8;
           AltName: Full=ATP-dependent RNA helicase eIF4A-8
 gi|475219|emb|CAA55639.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
 gi|475221|emb|CAA55640.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
          Length = 413

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 121/312 (38%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        +  +RI     H+I+GT     D ++   L        +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILAAGVHVIVGTPGRVFDMLRRQSLRPDYLRMFVLDEADEMLS 196

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++        T   V + +AT  P  L +T        K   KP        V I
Sbjct: 197 RGFKDQIYDIFQMLPTKVQVGVFSATMPPEALDITR-------KFMNKP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRT 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 361

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 362 NYLHRI-GRSGR 372


>gi|222479859|ref|YP_002566096.1| DEAD/DEAH box helicase domain protein [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222452761|gb|ACM57026.1| DEAD/DEAH box helicase domain protein [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 807

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/350 (19%), Positives = 135/350 (38%), Gaps = 62/350 (17%)

Query: 297 ILQGDVGSGKTLVALI-AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN----TQII 351
           +L  +  SGK+L   + A  AA++ GG+ + + P   L     E + +        + + 
Sbjct: 70  VLATETASGKSLAYTVPAFEAAMDHGGRTLYVGPQNALIADQEESLSELAHGLGFGSGVS 129

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY----------KLILVIVD 401
           VE  TG + +  +R   +R    +  +++    +   ++  Y           L  V++D
Sbjct: 130 VESYTGRLSRGEKRDVRDR----EPTVLLSNPDMLHYALLPYAGRLWDWFFSSLEYVVID 185

Query: 402 EQHR----FGVQQRLKLTQKA-------TAPHVLLMTAT---PIPRTLVLTSLGDIDISK 447
           E H     FG Q  + L + A       ++P  +  +AT   P+     +T      I+ 
Sbjct: 186 EVHSYRGVFGSQVAMTLRRLARTCERFGSSPQFVCCSATINNPVEHVATVTGRDPTGITL 245

Query: 448 ITEKPAGRKPIKTVII-PINRIDEVIER----LKVVLSEGKK-----------------A 485
           + E  +GR P   V+  P    D+  ER     K   +E K+                 A
Sbjct: 246 VDEDTSGRGPRDWVLWNPPEYDDDWQERGSGRRKSSHTESKRLFVDLVTAGAQTLAFTRA 305

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
                Q      S+ R   ER           +      ++D  +  +     +G  + +
Sbjct: 306 RQTAEQYATDSASDLRERGER------GLAGKVGAYQAALNDDRRREIEADLHSGDLRGV 359

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            +T+ +E+G+DV     +I++      ++  +Q  GR GRG++ +  +++
Sbjct: 360 WSTSALELGVDVGGLDAVILDGYPGTRMSA-YQRAGRAGRGDDPALVVMV 408


>gi|188583653|ref|YP_001927098.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179347151|gb|ACB82563.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 501

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 135/335 (40%), Gaps = 42/335 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI  +L     +  +L I Q   G+GKT    + M   +E G       + +I
Sbjct: 24  PTPIQAQAIPHVLA----RRDVLGIAQ--TGTGKTAAFTLPMLTMLETGRARARMPRTLI 77

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  ++Y  N ++ V +I G +  A +   L R       ++I T    
Sbjct: 78  LEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTR----GTDVLIATPGRL 133

Query: 387 QDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLTS 439
            D  +  KL+L     +++DE  R        +      P +  ++   P  R TL  ++
Sbjct: 134 LDHFERGKLLLTGVELLVIDEADR--------MLDMGFIPDIERIVKMVPFTRQTLFFSA 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               +I ++ +          V  P +    + +RL    +EG +   I   +    +  
Sbjct: 186 TMPPEIERLADMFLHNPQRVEVARPSSTATTIEQRLVATGAEGHEKRKILRHLIRSADEL 245

Query: 498 -------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  +  R V     SL  H   ++A +HG M    + + +D F++G   LL+A+ V
Sbjct: 246 QNGIIFCNRKRDVALLQKSLASH-GFNVAALHGDMDQRARTAALDGFRSGEVPLLVASDV 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              G+D+   S +   +  H     +H++ GR GR
Sbjct: 305 AARGLDIPAVSHVFNFDVPHHPEDYVHRI-GRTGR 338


>gi|108761880|ref|YP_632259.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
           1622]
 gi|108465760|gb|ABF90945.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
           1622]
          Length = 501

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 147/352 (41%), Gaps = 57/352 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT----LVALIAMAAAVEAGG----Q 323
           +PT  Q+ AI   L        +L + Q   G+GKT    L  L  ++A   AGG    +
Sbjct: 23  TPTPIQQKAIPHALAGRD----VLGVAQ--TGTGKTAAFALPILQRLSAKAPAGGARPVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA Q  +    Y +   +   +I G + Q  + + L         +++ T 
Sbjct: 77  CLVLTPTRELAGQVGDSFGTYGKGLPLRHAVIFGGVGQNPQVQTLRN----GVDVLVATP 132

Query: 384 A-----LFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPR 433
                 + Q  +    L + ++DE  R    G    ++   KA  P    L  +AT +P 
Sbjct: 133 GRLLDLMEQGFVSLRSLEVFVLDEADRMLDMGFIHDVRRVIKALPPKRQTLFFSAT-LPP 191

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            +V     D+  S +T+      PI+  + P +   E + + +V   E ++   +   + 
Sbjct: 192 DIV-----DLARSILTD------PIRVEVTPASSTAETVSQ-QVYFVEREQKRGLLTHL- 238

Query: 494 EKKESNF-RSVV--------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             KE N  R++V         R     E    S A IHG  S   +E  +D F++GT ++
Sbjct: 239 -LKEGNIHRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGTLRV 297

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           L+AT +   GID+   S ++  +  +     +H++ GR GR    G  +S C
Sbjct: 298 LVATDIAARGIDIDGLSYVVNYDLPNVPEQYVHRI-GRTGRAGASGTAVSFC 348


>gi|50421353|ref|XP_459226.1| DEHA2D17072p [Debaryomyces hansenii CBS767]
 gi|74602368|sp|Q6BRE4|DBP5_DEBHA RecName: Full=ATP-dependent RNA helicase DBP5
 gi|49654893|emb|CAG87398.1| DEHA2D17072p [Debaryomyces hansenii]
          Length = 493

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 151/375 (40%), Gaps = 69/375 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+K QE A+  +L     KN    I Q   G+GKT    + M + V+      Q + +AP
Sbjct: 126 PSKIQEKALP-LLISNPPKNM---IGQSQSGTGKTAAFSLTMLSRVDESDPNTQCICLAP 181

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E I   ++ T+I  ++I  +        A++R     AH+++GT     D 
Sbjct: 182 ARELARQTLEVITTMSKFTKITSQLIVPD--------AMQRGQSTCAHVLVGTPGTLLDL 233

Query: 390 IQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           I+       K+ + ++DE       Q L          V +    P    LVL S    D
Sbjct: 234 IRRKLINTSKVKVFVLDEADNMLESQGL------GDQCVRVKRTLPKATQLVLFSATFPD 287

Query: 445 -ISKITEKPAGRKPIKTVIIP-INRIDEVIERLKVVLSEG-KKAYWICPQIEEKKE---- 497
            + K  EK           +P  N ++   E L V   EG K+ Y  C     K E    
Sbjct: 288 EVRKYAEK----------FVPNANSLELKQEELNV---EGIKQLYMDCDSANHKFEVLSE 334

Query: 498 --------SN--FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKL 544
                   S+  F    +  N L+          +I+H  +   +++ ++D F+ G  K+
Sbjct: 335 LYGLLTIGSSIIFVKTKDTANILYAKMKKEGHKCSILHAGLETSERDRLIDDFREGRSKV 394

Query: 545 LIATTVIEVGIDVVDASIIIIEN--AEHFGLAQ----LHQLRGRVGRGEEISSCILLYHP 598
           LI T V+  GID+   S+++  +   +  G       LH++ GR GR   +   I   H 
Sbjct: 395 LITTNVLARGIDIASVSMVVNYDLPVDQKGAPDPSTYLHRI-GRTGRFGRVGVSISFVH- 452

Query: 599 PLSKNSYTRLSVLKN 613
              + SY  L  +++
Sbjct: 453 --DQKSYQDLMAIRS 465


>gi|1054723|emb|CAA31405.1| vasa [Drosophila melanogaster]
          Length = 661

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 117/281 (41%), Gaps = 41/281 (14%)

Query: 302 VGSGKTLVALIAMAA-------AVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   L+ + +        +E G  Q VI++P   LA Q +   +K+   + + + 
Sbjct: 291 TGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIG 350

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHR--- 405
           I+ G     H+ + + R      H++I T     D      I +     V++DE  R   
Sbjct: 351 IVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD 406

Query: 406 --FGVQQRLKLTQKATAP-HVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRK 456
             F    R  +T     P H  LM +   P  +       L +   + I  +        
Sbjct: 407 MGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVSVAIGIVG---GACS 463

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            +K  I  +N+     +R K++    ++A      +E K+ ++F   +  F S  E  T+
Sbjct: 464 DVKQTIYEVNK---YAKRSKLIEILSEQADGTIVFVETKRGADF---LASFLSEKEFPTT 517

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           SI   HG      +E  +  FKNG+ K+LIAT+V   G+D+
Sbjct: 518 SI---HGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDI 555


>gi|83858471|ref|ZP_00951993.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853294|gb|EAP91146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 480

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 152/352 (43%), Gaps = 56/352 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  QE AI   L        +L I Q   G+GKT    + M   +  G       ++++
Sbjct: 24  PTPIQEGAIPVALTGRD----VLGIAQ--TGTGKTASFTLPMIERLSRGRARARMPRSLV 77

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +AP   LA Q  + +K Y +N ++ + ++ G +    ++K L++     A I+I T    
Sbjct: 78  LAPTRELAAQVADNVKLYAKNHKLNMALLIGGVSFEPQKKILDQ----GADILIATPGRL 133

Query: 387 QDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIP-- 432
            D  +   L+L     +++DE  R         +++ LKL         L  +AT +P  
Sbjct: 134 LDHFERGGLLLTGVEILVIDEADRMLDMGFIPDIERILKLLPPRR--QTLFFSAT-MPGE 190

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI--NRIDEVIERLKVVLSEG--KKAYW 487
            + LV T L D +  ++T        I   I+ +  N+     E L+  ++    K    
Sbjct: 191 IKHLVDTFLRDPERVEVTRPAQTADTITQFILRVSDNQARTKREALRAAINRDGVKNGII 250

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C     K++ +   +V R  SL  H  S+ A IHG +    +   +  FK+G  +LL+A
Sbjct: 251 FC---NRKRDVD---IVAR--SLQRHGFSA-APIHGDLDQSQRTKTLAEFKSGELRLLVA 301

Query: 548 TTVIEVGIDVVDAS----IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           + V   G+D+   S    + I  NA+ +    +H++ GR GR  +    + L
Sbjct: 302 SDVAARGLDIPAVSHVFNVDIPRNADDY----VHRI-GRTGRAGQKGEAVTL 348


>gi|311281621|ref|YP_003943852.1| primosomal protein N' [Enterobacter cloacae SCF1]
 gi|308750816|gb|ADO50568.1| primosomal protein N' [Enterobacter cloacae SCF1]
          Length = 732

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLDGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQ---- 410
              +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H    +Q    
Sbjct: 277 HSALNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFNNLGVIVIDEEHDSSYKQQEGW 333

Query: 411 ----RLKLTQKATAPH--VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
               R     +A +    V+L +ATP   TL     G     K++++    +P
Sbjct: 334 RYHARDLAVWRAHSEQIPVILGSATPALETLHNVRQGKYRKLKLSKRAGNARP 386


>gi|294633723|ref|ZP_06712281.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
 gi|292830365|gb|EFF88716.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
          Length = 498

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 127/316 (40%), Gaps = 29/316 (9%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI-------LAQQHYEFIKKYTQNTQII 351
           +G  GSGKTL   +A+ A V AG  A    P+G+       LAQQ  + +  Y ++ ++ 
Sbjct: 112 RGRTGSGKTLAFGLALLARV-AGQPAAARQPLGLILVPTRELAQQVSDALAPYARSVKLR 170

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRF 406
           +  + G M    +   L       A +++ T    +D I     +  ++ + ++DE  + 
Sbjct: 171 LATVVGGMSTGRQAGVLRS----GAEVVVATPGRLKDLIDRGDCRLDQVCVTVLDEADQM 226

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                +    + TA   LL    P  + ++ ++  D D+ ++  +      + +V  P  
Sbjct: 227 ---ADMGFMPQVTA---LLDQVRPGGQRMLFSATLDRDVDRLVRRYLSDPVVHSVDPPAG 280

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHG 523
            +  +   +  V    K+A        + +   F       + L EH  SS    A +HG
Sbjct: 281 AVTTMEHHVLHVHGADKRAATTEIAARDGRVIMFLDTEHAVDRLTEHLLSSGVRAAALHG 340

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG-R 582
             +   +   +  FK G   +L+AT V   GI V +  +++  +        LH  RG R
Sbjct: 341 GKTQPQRTRTLAQFKTGHVSVLVATNVAARGIHVDNLDLVVNVDPPTDHKDYLH--RGDR 398

Query: 583 VGRGEEISSCILLYHP 598
             R  E  S + L  P
Sbjct: 399 TARAGEPGSVVTLVTP 414


>gi|229094565|ref|ZP_04225632.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-42]
 gi|228688812|gb|EEL42643.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-42]
          Length = 481

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 135/319 (42%), Gaps = 32/319 (10%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI-SKITEKPAG--RKPIKT 460
             F  Q    + +  T    +L +AT +P  +   S   ++  + I  K AG     I+ 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH 219

Query: 461 VIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            +  + R +E +  LK V + E   +  I  + +E  +  +R +  R N   +       
Sbjct: 220 TLFEV-REEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-NRVNYPCDK------ 271

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      + +H+ 
Sbjct: 272 -IHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRT 330

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       I    P
Sbjct: 331 -GRTGRAGNSGKAITFITP 348


>gi|197106923|ref|YP_002132300.1| superfamily II DNA and RNA helicase [Phenylobacterium zucineum
           HLK1]
 gi|196480343|gb|ACG79871.1| superfamily II DNA and RNA helicase [Phenylobacterium zucineum
           HLK1]
          Length = 587

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 129/323 (39%), Gaps = 40/323 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A A A+  GG+          +++AP   LA Q    ++     
Sbjct: 39  LVSAQTGSGKTVAFGLAAAPALLDGGERFEAPAAPLGLVIAPTRELALQVARELEWLYAE 98

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
           T   V    G M     ++AL   A G  H+++GT    +D ++   L L     V++DE
Sbjct: 99  TAARVVTCVGGMDARREQRAL---AAG-CHLVVGTPGRLRDHLERGNLDLSALRVVVLDE 154

Query: 403 QHR---FGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTSLGDIDISKIT----EKPA 453
                  G ++ L+    AT       L +AT     + L      D  +I     ++P 
Sbjct: 155 ADEMLDLGFREDLEEILDATPKERRTFLFSATLAKDIVALARRYQQDAVRIDTVRRDEPH 214

Query: 454 GRKPIKTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           G    + V +  N ++  V+  L+    E   A   C   E        +V   + +L E
Sbjct: 215 GDIEYRAVRVAPNELENAVVNVLRYF--ESPSALIFCATRE--------AVRHLYGALRE 264

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                +A+  G M   ++   + + ++G  +  +AT V   G+D+ D  ++I        
Sbjct: 265 RGFPVVAL-SGEMGQKERSDALQALRDGHARACVATDVAARGLDLPDLGLVIHAELPVNK 323

Query: 573 LAQLHQLRGRVGRGEEISSCILL 595
            A LH+  GR GR       +LL
Sbjct: 324 AALLHR-SGRTGRAGRKGVSVLL 345


>gi|15615910|ref|NP_244214.1| RNA helicase [Bacillus halodurans C-125]
 gi|10175971|dbj|BAB07067.1| RNA helicase [Bacillus halodurans C-125]
          Length = 389

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 140/342 (40%), Gaps = 41/342 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           PT+ Q+  I + L   +       I+    G+GKTL  L+ M    E      QA+I+AP
Sbjct: 25  PTEIQQQVIPEALDGQN------LIVHSQTGTGKTLAYLLPMLTKTEELPEQTQALILAP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E  K+ T  T I V  + G    A+ ++ +E++   + H+ +GT     + 
Sbjct: 79  TQELAMQIVEVAKQLTATTSITVLPLIGG---ANIKRQVEKLKKKKPHVAVGTPGRILEL 135

Query: 390 IQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           ++  KL      +++VDE  R        + ++ +A +     A  I        +    
Sbjct: 136 MEMKKLKVPHVKMIVVDEADR--------MMEETSAWNAFENVAKRIGNEAQYLFVSATF 187

Query: 445 ISKITEKPAGRKP-IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
            S+ TE  A   P I+TV    N + + +    +   + ++   +   I    E+  R +
Sbjct: 188 ASRFTELVAPYVPFIETVSAQGNTVQQAVNHWFIRCEKRERMDVVRKLIHH--ENIQRGI 245

Query: 504 VERFNSLHEHFTSSIA----------IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           V  F +  EH   + A           +    +  ++E  +   K    ++LIA+ V   
Sbjct: 246 V--FVNRLEHVAETTAKLQFKGIKAVALSSDQTKQERERALHQLKTSEAQVLIASDVAAR 303

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           G+DV D S +I         A +H+  GR GR  +  + I L
Sbjct: 304 GLDVDDVSHVIQLEPPTTSEAYVHRA-GRTGRMGKEGTVITL 344


>gi|134292614|ref|YP_001116350.1| ATP-dependent RNA helicase DbpA [Burkholderia vietnamiensis G4]
 gi|134135771|gb|ABO56885.1| ATP-dependent RNA helicase DbpA [Burkholderia vietnamiensis G4]
          Length = 465

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 138/309 (44%), Gaps = 32/309 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ + ++A     QA+I+ P   LA Q  + +++  +  + + V
Sbjct: 48  IAQAKTGSGKTAAFSLALLSRLDARRFDVQAMILCPTRELADQVAQEVRRLARAEENVKV 107

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AH+++GT     D ++   L L     +++DE  R  
Sbjct: 108 LTLCGGTPMRPQAQSLE---HG-AHVVVGTPGRIMDHLERGNLKLDALNTLVLDEADRM- 162

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L        V +    P  R TL+ ++     I+K++++   R P K V +   
Sbjct: 163 ------LDMGFFDDIVKVARMCPATRQTLLFSATYPDGIAKLSQQFL-RNP-KEVKLAER 214

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIA 519
             D  I +    +++ ++ + +   +   +        +  +   +  + LH     ++A
Sbjct: 215 HDDSKIRQRFYEVTDTERLHAVGQLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALA 274

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++
Sbjct: 275 L-HGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI 333

Query: 580 RGRVGRGEE 588
            GR GR ++
Sbjct: 334 -GRTGRADQ 341


>gi|315652888|ref|ZP_07905858.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315484846|gb|EFU75258.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 660

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 140/336 (41%), Gaps = 69/336 (20%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G GK+++  +A    +E GG  +I++P+  L ++  + IK++       V ++ G +  
Sbjct: 47  TGGGKSIIYWMA---GIECGGTTIIVSPLIALIEEQAQKIKEHGYE----VLVLHGRIKV 99

Query: 362 AHRRKALERIAHGQ--------AHIIIGTHALF-------QDSIQYYKLILVIVDEQH-- 404
             +   L   A G+        +   I T   F       QDSI+     L+++DE H  
Sbjct: 100 NKQVSVLTDYAMGKITPDFIFVSPEKIATDGYFEFCLDKRQDSIK-----LMVIDEVHCV 154

Query: 405 -RFGVQQR----------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            ++G+  R            L  +     VL +TAT  P  L        DI  +T +  
Sbjct: 155 SQWGLSFRPFYKRIPEFLDNLFGREKWCKVLGLTATINPMELK-------DIC-LTFRID 206

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-----FRSVVER-- 506
            +  +K  I+  + I   +++     +E +K  +    +E  K+       +R   ER  
Sbjct: 207 SKNILKDNILMRSEIQLHVKKFG---NENEKEEYFWNLVERHKDEKILVYIYRKKGERGV 263

Query: 507 --FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                  +++    A+ HG M+  D+ +++D FK+    ++ +T    +GID+ D  ++I
Sbjct: 264 EGLAQKAKNYGYKAALFHGDMTAKDRMNIIDEFKSNRINMVFSTNAFGMGIDIPDIRVVI 323

Query: 565 IENAEHFGL----AQLHQLRGRVGRGEEISSCILLY 596
                HF +     Q +Q  GR  R    ++  LLY
Sbjct: 324 -----HFMIPESAEQYYQEVGRAARDGNGANAYLLY 354


>gi|255524857|ref|ZP_05391806.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|255511427|gb|EET87718.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
          Length = 375

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 155/357 (43%), Gaps = 52/357 (14%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI----AMAAAV 318
           KIL+N   + PT  Q  +I  I      KN    I++   G+GKTL  L+     ++  V
Sbjct: 14  KILKNNGITEPTPVQAESISLI------KNGRDVIVESQTGTGKTLAFLLPIFENISTKV 67

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           +A  QA+I+ P   LA Q  E   K  Q   I +    G      + K L+       H+
Sbjct: 68  DAV-QALILTPTRELALQITEEALKLKQAKDINILAAYGGKDIGSQLKKLK----TGIHL 122

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           II T     D     +I   KL   ++DE       Q L +  K     ++  T+    +
Sbjct: 123 IIATPGRLLDHLERKTIDLSKLKTFVLDE-----ADQMLLMGFKNDVETIIKETSKK-RQ 176

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK---VVLSEGKKAYWICP 490
           TL  ++  + D+ ++    A R   + + + IN+ +  ++ +K   V  ++ +K   +C 
Sbjct: 177 TLCFSATINSDVKRL----AYRYTKEPLAVTINKEEVTLDAIKQQVVETTDRRKQDALCT 232

Query: 491 QIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            + +             R V E   SL++        +H  +    +E +M +F+NG  +
Sbjct: 233 VLNQDNPYMAIIFCRTKRRVDELEVSLYKR-GCDCKKLHSDILQSKRERIMKAFRNGDFQ 291

Query: 544 LLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGR-GEEISSCILL 595
            LIAT V   G+D+   S I    I E+AE +    +H++ GR GR GEE  +C+ +
Sbjct: 292 YLIATDVASRGLDISGVSHIYNYDIPESAESY----IHRI-GRTGRAGEEGYTCLFI 343


>gi|251783115|ref|YP_002997418.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391745|dbj|BAH82204.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127866|gb|ADX25163.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 447

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 148/353 (41%), Gaps = 34/353 (9%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAV 318
           Q+ L  I F +PT+ Q+  I      +    R L + +   GSGKT   L+ +       
Sbjct: 13  QQALEEIGFVNPTEVQQRLIP-----IVNSGRDL-VGESKTGSGKTHTFLLPIFEKLDEA 66

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           +A  Q V+ AP   LA Q ++  K+  +++   + +    +    + + +E++  GQ HI
Sbjct: 67  KAEVQVVVTAPSRELATQIFDACKQIAKHSPKDIRL-ANYVGGTDKLRQIEKLKSGQPHI 125

Query: 379 IIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTA 428
           +IGT     D ++      +K    +VDE         L    K  A       +L+ +A
Sbjct: 126 VIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKSVQILVFSA 185

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T IP+ L         + K    P   + IKT  +  + ID  +   K     G+    I
Sbjct: 186 T-IPQKLQPF------LKKYLTNPVIEQ-IKTETVIADTIDNWLVSTKGRDKNGQ-ILEI 236

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              ++      F +  ER + LH    ++   +A IHG +   +++ +M+  K    + +
Sbjct: 237 LKTMQPYMAMLFVNTKERADDLHAFLVANGLKVAKIHGGIPPRERKRIMNQVKKLDFEYI 296

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 297 VATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGMAGTAITLYQP 348


>gi|226325273|ref|ZP_03800791.1| hypothetical protein COPCOM_03065 [Coprococcus comes ATCC 27758]
 gi|225206621|gb|EEG88975.1| hypothetical protein COPCOM_03065 [Coprococcus comes ATCC 27758]
          Length = 742

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 19/192 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T+ QE AI+    D  +  R   +L G  GSGKT V +  +   V+   QA+++ P I +
Sbjct: 206 TEEQERAIRTFENDYKKGIRKTYLLYGVTGSGKTEVYMEMIRQVVKEKRQAIVLIPEIAL 265

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F + + +     V I+   +    R   + R   G+  ++IG   ALF     
Sbjct: 266 TYQTVMRFYRTFGER----VSIMNSRLSAGERYDQMMRAKKGEIDVMIGPRSALF---TP 318

Query: 392 YYKLILVIVDEQHR--FGVQQRLKLTQKATA--------PHVLLMTATPIPRTLVLTSLG 441
           +  L L+++DE+H   +  +Q  +   + TA          V+L +ATP         LG
Sbjct: 319 FPSLGLIVIDEEHEAAYKSEQVPRYHARETAIERASLEGASVVLGSATPSMEAFYRCELG 378

Query: 442 DIDISKITEKPA 453
           +  + ++  + A
Sbjct: 379 EYTLLELKRRTA 390


>gi|210135226|ref|YP_002301665.1| primosome assembly protein PriA [Helicobacter pylori P12]
 gi|210133194|gb|ACJ08185.1| primosomal protein replication factor [Helicobacter pylori P12]
          Length = 619

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + A+A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHPA-SLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      + + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKRVFKEN----LCLWHSKLSQTQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 219 LKELGLIIVDEEHDFS 234


>gi|78224236|ref|YP_385983.1| DEAD/DEAH box helicase-like [Geobacter metallireducens GS-15]
 gi|78195491|gb|ABB33258.1| DEAD/DEAH box helicase-like protein [Geobacter metallireducens
           GS-15]
          Length = 452

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 150/363 (41%), Gaps = 61/363 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT----LVALIAMAAAVEAGGQA---V 325
           PT  Q  AI   L+       +L   Q   G+GKT    L AL  +A   +  G+    +
Sbjct: 24  PTPIQAQAIPRALEGRD----LLATAQ--TGTGKTAAFVLPALQRLARPAQKPGRGPRVL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LAQQ  + ++ Y +  +I    I G MP    R+ L R+      +I+ T   
Sbjct: 78  VLTPTRELAQQVTDAVRSYGKFLRIRSGAILGGMPY---REQL-RLLSAPVDLIVATPGR 133

Query: 386 FQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTS 439
             D     S+   +L L+I+DE  R        L    +     +  A+P  R TL+ T+
Sbjct: 134 LVDLLDRRSLDLSRLELLILDEADRM-------LDMGFSDDVDRVAAASPSDRQTLLFTA 186

Query: 440 LGDIDISKITEKPAGR---KPIKTVIIPINRIDEVIER--------------LKVVLSEG 482
             D  ++++    AGR   +P +  +       E IE+              L+ ++++G
Sbjct: 187 TMDATMARL----AGRLLNEPERIEVAGTKTTHEHIEQRLHVADDLSHKNRLLQHLITDG 242

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                I     ++   N    +E  +  H     S A +HG M    +   + + K G  
Sbjct: 243 DVRKAIIFSATKRDAENM--AIELRSQGH-----SAAALHGDMPQSARNRTIAAMKQGRI 295

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           +LL+AT V   G+DV   S +I  +   F    +H++ GR GR    +S I +    L++
Sbjct: 296 RLLVATDVAARGLDVSGISHVINFDLPKFAEDYVHRI-GRTGRAG--ASGIAISFASLNE 352

Query: 603 NSY 605
            SY
Sbjct: 353 VSY 355


>gi|238789601|ref|ZP_04633385.1| Primosomal protein N' [Yersinia frederiksenii ATCC 33641]
 gi|238722354|gb|EEQ14010.1| Primosomal protein N' [Yersinia frederiksenii ATCC 33641]
          Length = 732

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q    F ++++      VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENILAQGRQALVLVPEIGLTPQTIARFRERFSAP----VEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
              +  + R     R  +G+A I+IGT  ALF     + +L ++I+DE+H          
Sbjct: 277 HSGLNDSERLSVWLRARNGEAAIVIGTRSALF---TPFSRLGVIIIDEEHDSSYKQQEGW 333

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           R+  +       +     +++ TATP   TL    +G      ++++    KP
Sbjct: 334 RYHARDLAVFRAREENIPIVMGTATPALETLHNVQMGKYRQLTLSKRAGNAKP 386


>gi|296190482|ref|XP_002743273.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Callithrix
           jacchus]
          Length = 437

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 147/340 (43%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R +   Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 61  PSAIQQRAIKQII-----KGRDV-TAQSQSGTGKTATFNISVLQCLDIQVRETQALILAP 114

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  + +        +      G     +  + + ++ +GQ H++ GT     D 
Sbjct: 115 TRELAVQIQKGLLALGDYMNVQCHTCIGG---TNVGEDIRKLDYGQ-HVVAGTPGRVFDM 170

Query: 389 ----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
               S++   + ++++DE       G ++++    +   P   V+L++AT     L +T+
Sbjct: 171 IRGRSLRTCAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEGKKA 485
               D  +I  K      + IK   + + R +              I ++ +  +  +K 
Sbjct: 231 KFMTDPVRILVKRDKLTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQVVIFCNTKRKV 290

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ +E+NF                +++ IHG M   + ES+M  F+ GT ++L
Sbjct: 291 DWL---TEKMREANF----------------TVSSIHGDMPQKEWESIMKEFRAGTSQVL 331

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 332 ISTDVWARGLDVPQVSLIITYDLTNNRELYIHRI-GRSGR 370


>gi|288931017|ref|YP_003435077.1| helicase [Ferroglobus placidus DSM 10642]
 gi|288893265|gb|ADC64802.1| helicase domain protein [Ferroglobus placidus DSM 10642]
          Length = 761

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 18/140 (12%)

Query: 303 GSGKTLVALIAMAAAV-EAGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMP 360
           G GKT+VAL+ +A+ + +  G+ + +AP   L +QH  F+K+    N + IV   TG +P
Sbjct: 39  GLGKTVVALLVIASRLHKLDGKVLFLAPTKPLVEQHAFFLKRTLNINEEEIVS-FTGEIP 97

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHR-FGVQQRL-- 412
              R++  E+     A +I+ T  + ++ I   +L     +L + DE HR  G    +  
Sbjct: 98  PEKRQRMYEK-----ARVIVSTPQVIENDIISGRLTLSDFVLAVFDEAHRAVGNYSYVFI 152

Query: 413 --KLTQKATAPHVLLMTATP 430
             +  +++  P +L +TA+P
Sbjct: 153 ARRFVEESKNPLILAITASP 172


>gi|257866121|ref|ZP_05645774.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC30]
 gi|257872451|ref|ZP_05652104.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC10]
 gi|257875753|ref|ZP_05655406.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC20]
 gi|257800055|gb|EEV29107.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC30]
 gi|257806615|gb|EEV35437.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC10]
 gi|257809919|gb|EEV38739.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC20]
          Length = 448

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 166/394 (42%), Gaps = 72/394 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT+ QE  I  I     QK R + + Q   GSGKT   L+ +   ++A     Q VI AP
Sbjct: 24  PTEVQEKLIPVI-----QKGRSV-VGQSQTGSGKTHTFLLPLMDKIDAEKDEVQVVITAP 77

Query: 330 IGILAQQHYEFIKKYT--QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
              LA Q Y   K+     + +I V    G      +++ L R+ + Q H++IGT     
Sbjct: 78  SRELATQIYHAAKQIGGFHDPEIRVSNFVGG---TDKQRQLSRLQNQQPHVVIGTPGRIL 134

Query: 388 DSIQYYKL-----ILVIVDEQH---RFGVQQRL-----KLTQKATAPHVLLMTATPIP-- 432
           D I    L      + +VDE       G  + +     +L +K     +L+ +AT IP  
Sbjct: 135 DMINEQALGVHTANVFVVDEADMTLDMGFLEEVDQIAGRLPEKL---QMLVFSAT-IPEK 190

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWIC 489
            R  +   + +  I +I  K      I+  +I       +++I +L   L+ G     I 
Sbjct: 191 LRPFLKKYMANPLIEEIKSKAVISDTIENWLISTKGKNTNKLIYQL---LTTGHPYLAIV 247

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   +N +S V+      +     +A IHG +S  +++ +M   +N   + ++AT 
Sbjct: 248 -------FANTKSRVDEITDYLKEQGLKVAKIHGDISPRERKRIMRQVQNLDYQYVVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQ--LHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           +   GID+   S +I  NAE        +H++ GR GR +   + I LY P         
Sbjct: 301 LAARGIDIEGVSHVI--NAEIPADLDFFIHRV-GRTGRNQMDGTAITLYDP--------- 348

Query: 608 LSVLKNTEDGFLIAEEDL------KQRKEGEILG 635
                 +++G + A EDL      K+ K GEI+ 
Sbjct: 349 ------SDEGAIQAIEDLGVVFQPKEIKNGEIVA 376


>gi|298489929|ref|YP_003720106.1| DEAD/DEAH box helicase domain-containing protein ['Nostoc azollae'
           0708]
 gi|298231847|gb|ADI62983.1| DEAD/DEAH box helicase domain protein ['Nostoc azollae' 0708]
          Length = 513

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 153/362 (42%), Gaps = 56/362 (15%)

Query: 264 KILRNIPFS-PTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +IL  + F+ PT  Q  AI  +L  +D+        + Q   G+GKT    + M   ++ 
Sbjct: 16  EILEKLSFTTPTNIQTQAIPQLLAGRDV--------VGQSQTGTGKTAAFSLPMLEKLDV 67

Query: 321 GG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                QAV++ P   LA Q ++ I ++  N  + V  I G      +   L+R      H
Sbjct: 68  SKKAVQAVVLTPTRELAMQVHDAISQFMGNDGLRVLAIYGGQSIDRQMMQLKR----GVH 123

Query: 378 IIIGT----------HALFQDSIQYYKLILVIVDEQHRFG-VQQRLK-LTQKATAPHVLL 425
           +++GT           +L  D ++++  +L   DE    G +   ++ L+Q  T     L
Sbjct: 124 VVVGTPGRVIDLLERGSLKLDQVKWF--VLDEADEMLSMGFIDDVIRILSQAPTERQTAL 181

Query: 426 MTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT  P  R LV   L +  ++   E+P      K     IN++  +I R         
Sbjct: 182 FSATMPPSIRQLVNKFL-NSPVTVTVEQP------KAAPNKINQVAYLIPR------HWT 228

Query: 484 KAYWICPQIE-EKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           KA  + P +E E  E+        R+  E  N L +    S+   HG +S   +E ++  
Sbjct: 229 KAKALQPILEMEDPETALIFVRTRRTAAELTNQL-QAAGHSVDEYHGDLSQQARERLLTR 287

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+N   + ++AT +   G+DV   S +I  +        +H++ GR GR  +  + I L 
Sbjct: 288 FRNRQVRWVVATDIAARGLDVDLLSHVINFDLPDSVETYVHRI-GRTGRAGKEGTAISLV 346

Query: 597 HP 598
            P
Sbjct: 347 QP 348


>gi|168186859|ref|ZP_02621494.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum C str.
           Eklund]
 gi|169295183|gb|EDS77316.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum C str.
           Eklund]
          Length = 812

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 146/347 (42%), Gaps = 54/347 (15%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           K QE  I  +L      N +L I+    G GK++   I    A+   G  ++++P+  L 
Sbjct: 20  KGQEQVITSVLSG----NDVLAIMP--TGGGKSICYQIP---ALIMEGMTIVISPLISLM 70

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII-IGTHAL----FQDS 389
           +   + IK    +  I    I  ++      + +E +   +  I+ +    L    F  +
Sbjct: 71  KDQVDSIK----SMGISSAYINSSLSTYEFNEVIESLKDNKYKILYVAPERLESYEFLSA 126

Query: 390 IQYYKLILVIVDEQH---RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI--D 444
           I+  K+  V +DE H   ++G     +++ +  +  +      PI      T+  ++  D
Sbjct: 127 IENIKISQVAIDEAHCVSQWG--HDFRVSYRNVSKFIKRFRVRPIVTAFTATASNEVRED 184

Query: 445 ISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAYWICPQIEEKKESN-- 499
           I K+    KP      +  I   +R     E L + V+  G K  ++   IE  KE +  
Sbjct: 185 IIKLLRLNKP------QVFITGFDR-----ENLSISVIKSGSKKTYLLNYIENNKEESGI 233

Query: 500 -FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            + +  +  ++++E+      S+   H  +SD ++    + F +   ++++AT    +GI
Sbjct: 234 IYAATRKEVDNIYENLNKKGYSVGRYHAGLSDDERNKNQEDFIHDRVRIMVATNAFGMGI 293

Query: 556 DVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHP 598
           D  +   +I     H+ + +     +Q  GR GR  E S CILL+ P
Sbjct: 294 DKPNIRYVI-----HYSMPKNIESYYQEIGRAGRDGEKSECILLFAP 335


>gi|187734531|ref|YP_001876643.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424583|gb|ACD03862.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 423

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 147/365 (40%), Gaps = 60/365 (16%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV-ALIAMAAAVEAGGQ 323
           L N+ + +PT  Q + I  +LQ     N+ L  L    G+GKT   AL  +    E  G+
Sbjct: 19  LENLEYKTPTPIQAACIPLLLQ-----NKDLMGL-AQTGTGKTAAFALPLIQQLSERSGK 72

Query: 324 -------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                  A+I++P   LA Q +E I+ Y +   +   +I G +  A + K L     G  
Sbjct: 73  PPGRRVRALILSPTRELAAQIHENIRAYARGLHLSTAVIFGGVGYASQFKELA----GGL 128

Query: 377 HIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP- 430
            I++ T     D ++   + L     +I+DE                 A H+L M   P 
Sbjct: 129 DILVATPGRLIDHLERRTVSLDGVETLILDE-----------------ADHMLDMGFAPA 171

Query: 431 -------IPR---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
                  IPR   T + ++    +I ++ +    +     V  P +  D V + L +V S
Sbjct: 172 LKKIVSKIPRKRHTQMFSATMPDNIRQLAQTLLQKPETVRVSPPSSTADRVEQFLCMVGS 231

Query: 481 EGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           + +K       +++++        +  R   +R  S         + IHG  S   +E +
Sbjct: 232 QSEKRLLTLELLKQQELPGRTLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERM 291

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F++G   +L+AT +   GIDV D  ++I  +        +H++ GR  R       I
Sbjct: 292 LREFRSGKTPVLVATDIAARGIDVKDVRLVINYDLPEEPEVYVHRI-GRTARAGAAGQAI 350

Query: 594 LLYHP 598
            L  P
Sbjct: 351 ALCSP 355


>gi|114630811|ref|XP_507825.2| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan troglodytes]
          Length = 783

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 133/340 (39%), Gaps = 63/340 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   +             Q +++AP   LA Q  +     T+ 
Sbjct: 227 IAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITK- 285

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +    ER+ +G   I++GT    +D IQ  KL L     V++DE
Sbjct: 286 -KLSVACFYGGTPYGGQ---FERMRNG-IDILVGTPGRIKDHIQNGKLDLTKLKHVVLDE 340

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTAT------PIPRTLVLTSLGDIDIS 446
             +         V++ L +  K  +   P  LL +AT       + +  + ++   +D+ 
Sbjct: 341 VDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDL- 399

Query: 447 KITEKPAGRKPIKTVIIP---------INRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                  G+K  KT I             R   + + ++V      +    C   +E +E
Sbjct: 400 ------IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQE 453

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +  S +++              +HG +    +E  +  F+NG+  +L+AT V   G+D+
Sbjct: 454 LSQNSAIKQ----------DAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDI 503

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +  ++I  +      + +H+  GR GR      CI  Y 
Sbjct: 504 PEVDLVIQSSPPKDVESYIHR-SGRTGRAGRTGVCICFYQ 542


>gi|114706541|ref|ZP_01439442.1| primosome assembly protein PriA [Fulvimarina pelagi HTCC2506]
 gi|114537933|gb|EAU41056.1| primosome assembly protein PriA [Fulvimarina pelagi HTCC2506]
          Length = 742

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 34/235 (14%)

Query: 235 AGQIALLLMRKQFKKEIGI-PINVEGKIAQKILRNIPFSP----------------TKSQ 277
           A + AL+  +       G+ P  V+G +     R + F P                ++ Q
Sbjct: 154 AAEEALVWTKSGLAHAAGVTPSVVDGLMKLGAFRAVKFPPPPAVAEPDTSYGRAELSEEQ 213

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
                ++     Q    + +L+G  GSGKT V   A+A+A++AG Q +I+ P   L Q  
Sbjct: 214 SEVAGELAATGCQNEFSVTLLEGVTGSGKTEVYFEAVASALDAGKQVLILLPEIALTQS- 272

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLI 396
             F+ ++ +           ++    R K   ++  G+  ++ G   ALF   + + +L 
Sbjct: 273 --FLDRFHERFGAPPAEWHSDIAPRMREKIWRQVTEGRVRVVAGARSALF---LPFKELG 327

Query: 397 LVIVDEQHRFGVQQRLK----------LTQKATAPHVLLMTATPIPRTLVLTSLG 441
           LV+VDE+H    +Q  +          +  +     V+L +ATP   T V   LG
Sbjct: 328 LVVVDEEHDPAYKQEDRTFYHARDMAVVRGRVGGFPVILASATPSVETRVNADLG 382


>gi|169600899|ref|XP_001793872.1| hypothetical protein SNOG_03302 [Phaeosphaeria nodorum SN15]
 gi|118575175|sp|Q0UY62|DBP3_PHANO RecName: Full=ATP-dependent RNA helicase DBP3
 gi|111068913|gb|EAT90033.1| hypothetical protein SNOG_03302 [Phaeosphaeria nodorum SN15]
          Length = 592

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 127/310 (40%), Gaps = 36/310 (11%)

Query: 301 DVGSGKTLV-------ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + GSGKTL        A++++      G +AVI++P   LA Q Y+ +        + V 
Sbjct: 223 ETGSGKTLAFGVPCVRAILSLPKDKRKGIKAVIVSPTRELAVQIYDQLVALAHPAGLSVV 282

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
            + G +P+  +  A  +     AHI++ T     D     S        V++DE  R   
Sbjct: 283 CVYGGVPKDPQVAACRK-----AHIVVATPGRLNDLIGDGSADLSNADYVVLDEADRMLD 337

Query: 407 -GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G ++ ++  ++Q       L+ TAT  P    L S   +   +IT        ++  + 
Sbjct: 338 KGFEEPIRQIISQTPKKRQTLMFTATWPPSVRDLASTFMVSPVRITIGDNQSGELRANV- 396

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV--------ERFNSLHEHFT 515
              RI +++E L     E ++   +  Q +  K  + R +V         R  +      
Sbjct: 397 ---RIKQLVEVLDPHAKE-QRLLQLLKQYQSGKNKDDRILVFCLYKKEAMRIENFIRMKG 452

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +  IHG +S   + + + +FK G   LL+AT V   G+D+    ++I           
Sbjct: 453 FRVGGIHGDLSQEKRSASLAAFKEGQVPLLVATDVAARGLDIPAVKLVINVTFPLTAEDY 512

Query: 576 LHQLRGRVGR 585
           +H++ GR GR
Sbjct: 513 VHRI-GRTGR 521


>gi|116180670|ref|XP_001220184.1| cell cycle control protein-related [Chaetomium globosum CBS 148.51]
 gi|118593420|sp|Q2HFP1|IF4A_CHAGB RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|88185260|gb|EAQ92728.1| cell cycle control protein-related [Chaetomium globosum CBS 148.51]
          Length = 397

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 141/353 (39%), Gaps = 73/353 (20%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLR--------------------------- 296
           K L ++P    +S      D   DM+ K+ +LR                           
Sbjct: 5   KGLEDVPEGQIESNYDETVDSFDDMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDV 64

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +        I   
Sbjct: 65  IAQAQSGTGKTATFSISVLQKIDPTVKSCQALILAPTRELAQQIQKVVIAIGDFMNIECH 124

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        KAL+        +I+GT     D IQ   L        +L   DE   
Sbjct: 125 ACIGGTSVRDDMKALQ----DGPQVIVGTPGRVHDMIQRRILKTDQMKMFVLDEADEMLS 180

Query: 406 FGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G  +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P++  
Sbjct: 181 RGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPVR-- 224

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + + +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 225 -ILVKKDELTLEGIKQFYIAVEKEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL 283

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +    +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 284 QARDFTVSAMHGDMDQTQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 336


>gi|95928230|ref|ZP_01310978.1| primosomal protein N' [Desulfuromonas acetoxidans DSM 684]
 gi|95135501|gb|EAT17152.1| primosomal protein N' [Desulfuromonas acetoxidans DSM 684]
          Length = 736

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 6/146 (4%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +  ++  + P +  ++Q+SA+  I + +   +    +L G  GSGKT V L ++AA + A
Sbjct: 191 VGCQVTADQPPTLNEAQQSAVHSIAEGLDGGDFKPFLLHGITGSGKTEVYLHSIAAVLAA 250

Query: 321 GGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
             QA+++ P I +  Q    F  ++ Q  Q I  ++   +  A R      I   +  I+
Sbjct: 251 DKQALVLVPEIALTPQLVARFRARFEQQGQRI-GVLHSGLSAAERYDMWRAIVRDEVTIV 309

Query: 380 IGTH-ALFQDSIQYYKLILVIVDEQH 404
           IG   A+F       +L +++VDE+H
Sbjct: 310 IGARSAVF---APLTRLGMIVVDEEH 332


>gi|307637730|gb|ADN80180.1| Helicase [Helicobacter pylori 908]
 gi|325996332|gb|ADZ51737.1| Helicase [Helicobacter pylori 2018]
 gi|325997921|gb|ADZ50129.1| Primosomal protein [Helicobacter pylori 2017]
          Length = 619

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L GD GSGKT + + A+A  +E    A+++ P I +  Q      K + +N    + + 
Sbjct: 129 LLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIALTPQMQQRLKKVFKEN----LGLW 184

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              + Q  +++ LE++   +  +++GT  ALF   +   +L L+IVDE+H F  + +
Sbjct: 185 HSKLSQNQKKQFLEKLYSQEIKLVVGTRSALF---LPLKELGLIIVDEEHDFSYKSQ 238


>gi|1230564|gb|AAB02546.1| Gu protein [Homo sapiens]
          Length = 801

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 133/340 (39%), Gaps = 63/340 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   +             Q +++AP   LA Q  +     T+ 
Sbjct: 245 IAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITK- 303

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +    ER+ +G   I++GT    +D IQ  KL L     V++DE
Sbjct: 304 -KLSVACFYGGTPYGGQ---FERMRNG-IDILVGTPGRIKDHIQNGKLDLTKLKHVVLDE 358

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTAT------PIPRTLVLTSLGDIDIS 446
             +         V++ L +  K  +   P  LL +AT       + +  + ++   +D+ 
Sbjct: 359 VDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDL- 417

Query: 447 KITEKPAGRKPIKTVIIP---------INRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                  G+K  KT I             R   + + ++V      +    C   +E +E
Sbjct: 418 ------IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQE 471

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +  S +++              +HG +    +E  +  F+NG+  +L+AT V   G+D+
Sbjct: 472 LSQNSAIKQ----------DAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDI 521

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +  ++I  +      + +H+  GR GR      CI  Y 
Sbjct: 522 PEVDLVIQSSPPKDVESYIHR-SGRTGRAGRTGVCICFYQ 560


>gi|322619230|gb|EFY16113.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322626097|gb|EFY22909.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626443|gb|EFY23249.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632443|gb|EFY29191.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635075|gb|EFY31796.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642723|gb|EFY39313.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646451|gb|EFY42962.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650761|gb|EFY47162.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652945|gb|EFY49282.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657259|gb|EFY53539.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662253|gb|EFY58468.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666786|gb|EFY62962.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672058|gb|EFY68173.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675779|gb|EFY71851.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681804|gb|EFY77830.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684000|gb|EFY80009.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323193272|gb|EFZ78487.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197629|gb|EFZ82762.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323200796|gb|EFZ85867.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207198|gb|EFZ92150.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211401|gb|EFZ96242.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323218554|gb|EGA03262.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220964|gb|EGA05396.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226040|gb|EGA10258.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231620|gb|EGA15732.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236927|gb|EGA20998.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239447|gb|EGA23496.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243960|gb|EGA27971.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249322|gb|EGA33239.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250435|gb|EGA34318.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258889|gb|EGA42541.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260912|gb|EGA44512.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265252|gb|EGA48749.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270474|gb|EGA53920.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 732

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH--RFGVQQRL 412
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H   +  Q+  
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQEGW 333

Query: 413 KLTQKATAPH--------VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +   +  A +        ++L +ATP   TL         + ++T++    +P
Sbjct: 334 RYHARDLAVYRAHSEQIPIILGSATPALETLCNVRQKKYRMLRLTQRAGNARP 386


>gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 514

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/354 (19%), Positives = 145/354 (40%), Gaps = 60/354 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGG-QA 324
           +P+  Q  AI  +LQ    K+ M        G+GKT      ++ L++     +AG  +A
Sbjct: 23  TPSPIQAQAIPAVLQG---KDVMA---AAQTGTGKTAGFTLPMLELLSKGNRAQAGQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +N  +   +I G +P   +   + ++ HG   +++ T  
Sbjct: 77  LVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQ---IAKLRHG-VDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 133 RLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRK-------ILAILPKQRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
               D  +   K     P++  + P N     +++            W+CP  + +K   
Sbjct: 186 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQ------------WVCPVDKSQKSAL 233

Query: 497 ------ESNFRSVV---------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 +++++ V+          R     E      A IHG  S   +   +  FKNG 
Sbjct: 234 LIQLIKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQ 293

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            ++L+AT +   G+D+     ++  +  +     +H++ GR GR       + L
Sbjct: 294 ARVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGQAVSL 346


>gi|291280174|ref|YP_003497009.1| ATP-dependent RNA helicase DEAD/DEAH box family [Deferribacter
           desulfuricans SSM1]
 gi|290754876|dbj|BAI81253.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Deferribacter
           desulfuricans SSM1]
          Length = 525

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 138/327 (42%), Gaps = 38/327 (11%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IV 352
           + Q   G+GKT    + LI M    ++G + +I+ P   LA Q  E I       ++ IV
Sbjct: 47  VAQAQTGTGKTAAFGIPLIEMIDRKKSGVKCLILTPTRELANQVAEEINSLKGRRKLKIV 106

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQH 404
            +  G   +      L+R+  G A I++GT     D ++   L        IL   DE  
Sbjct: 107 PVYGGQSMELQ----LKRLKEG-ADIVVGTPGRILDHLKRKSLDISKIDFFILDEADEML 161

Query: 405 RFGVQQRLKLTQKATAPH--VLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIK 459
             G    +K   + T  +  VLL +AT +PR    L  T + D ++ K+  K       +
Sbjct: 162 NMGFIDDIKTIFRYTPENRRVLLFSAT-MPREILNLAKTFMKDYELIKVDAKQLTTSLTE 220

Query: 460 TVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER-FNSLHEHFTS 516
            +   +   D  E + R++ +  E     +   +++    +N   +++R +N+       
Sbjct: 221 QIYFEVREEDKFEALCRIRDMYPEFYGLIFCRTKVDVDTVAN--KLIDRGYNAEG----- 273

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               +HG +S   +E ++  FK     +L+AT V   GID+ + + +I  +      + +
Sbjct: 274 ----LHGDLSQYQRERILHKFKTKRINMLVATDVAARGIDIDNLTHVINYSLPQNPESYV 329

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKN 603
           H++ GR GR  +    I    P   +N
Sbjct: 330 HRI-GRTGRAGKKGIAITFVTPSEYRN 355


>gi|14475569|emb|CAC41974.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
          Length = 1883

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 6/103 (5%)

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE---SVMDSFKNGTCKLLIATTVIEVG 554
           SN  S++++     E+  +   + H  +  +D E   S++  F++G C+L++ T V+E G
Sbjct: 414 SNLTSMLKK-EPFQEYLHTKRLVGHNGVDGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEG 472

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           IDV D +I+I  +     L  L Q RGR  R +  S  I++Y+
Sbjct: 473 IDVQDCNIVICYDG-ILSLKSLIQRRGR-ARSKNESKFIIIYN 513


>gi|51476855|emb|CAH18395.1| hypothetical protein [Homo sapiens]
 gi|119574692|gb|EAW54307.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_c [Homo
           sapiens]
 gi|123993911|gb|ABM84557.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
 gi|124000685|gb|ABM87851.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
 gi|189054973|dbj|BAG37957.1| unnamed protein product [Homo sapiens]
          Length = 715

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 133/340 (39%), Gaps = 63/340 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   +             Q +++AP   LA Q  +     T+ 
Sbjct: 159 IAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITK- 217

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +    ER+ +G   I++GT    +D IQ  KL L     V++DE
Sbjct: 218 -KLSVACFYGGTPYGGQ---FERMRNG-IDILVGTPGRIKDHIQNGKLDLTKLKHVVLDE 272

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTAT------PIPRTLVLTSLGDIDIS 446
             +         V++ L +  K  +   P  LL +AT       + +  + ++   +D+ 
Sbjct: 273 VDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDL- 331

Query: 447 KITEKPAGRKPIKTVIIP---------INRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                  G+K  KT I             R   + + ++V      +    C   +E +E
Sbjct: 332 ------IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQE 385

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +  S +++              +HG +    +E  +  F+NG+  +L+AT V   G+D+
Sbjct: 386 LSQNSAIKQ----------DAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDI 435

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +  ++I  +      + +H+  GR GR      CI  Y 
Sbjct: 436 PEVDLVIQSSPPKDVESYIHR-SGRTGRAGRTGVCICFYQ 474


>gi|77413322|ref|ZP_00789517.1| competence protein F [Streptococcus agalactiae 515]
 gi|77160636|gb|EAO71752.1| competence protein F [Streptococcus agalactiae 515]
          Length = 429

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 160/368 (43%), Gaps = 66/368 (17%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q    +++L+ +S K  +L  +    G+GKT +   ++A  ++ GG   I +P I +
Sbjct: 93  TPYQNEVSEELLKGISSKENLL--VHAVTGAGKTEMIYHSIAKVIDTGGSVCIASPRIDV 150

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
             + H    K+ + + +  + ++ G  P +++R  L          I  TH L +    Y
Sbjct: 151 CLELH----KRLSNDFRCAITLMHGESP-SYQRSPL---------TIATTHQLLKF---Y 193

Query: 393 YKLILVIVDEQHRF----------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           +   L+IVDE   F          GV+Q LK  +  T+  +   + T + R +    L  
Sbjct: 194 HAFDLLIVDEVDAFPYVDNPILYHGVKQALK--ENGTSIFLTATSTTELERKVARKELKK 251

Query: 443 IDISKITEKPAGRKPIKTVIIP----INRIDEVIE------RLKVVLSEGKKAYW----I 488
           + +++       R     ++IP    ++ I + ++      +L  ++++ ++  +     
Sbjct: 252 LHLAR-------RFHANPLVIPEMVWVSGIQKSLQTQKLPPKLYQLINKQRQTRYPLLLF 304

Query: 489 CPQIEEKKESNFRSVVERFNSLHE-HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            P I E +   F  ++ +   + +  F SS            +  ++  F++    +L++
Sbjct: 305 FPHISEGQV--FTEMLRQAFPMEKIGFVSS--------KSTSRLKLVQDFRDNKLSILVS 354

Query: 548 TTVIEVGIDVVDASIIIIENAEH-FGLAQLHQLRGRVGRGEEISSCILLY-HPPLSKNSY 605
           TT++E G+      + +I+   H F  + L Q+ GRVGR  E    +L + H   SK+ +
Sbjct: 355 TTILERGVTFPSVDVFVIQANHHLFTKSSLVQISGRVGRALERPEGLLYFLHDGKSKSMH 414

Query: 606 TRLSVLKN 613
             +  +KN
Sbjct: 415 QAIKEIKN 422


>gi|328552365|gb|AEB22857.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens TA208]
 gi|328910714|gb|AEB62310.1| putative ATP-dependent RNA helicase [Bacillus amyloliquefaciens
           LL3]
          Length = 376

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 155/362 (42%), Gaps = 78/362 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           PT  QE A + I++          I +   G+GKTL   + +   +   +   Q +I+AP
Sbjct: 27  PTVIQEKAAQVIMEGKDV------IAESPTGTGKTLAYTLPVLERINPEQKHPQVIILAP 80

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q ++ I+ + + + +    + G    A+ +K +E++ + + HII GT     + 
Sbjct: 81  SRELVMQIFQVIQDWKKGSDLRALSLIGG---ANVKKQVEKLKN-KPHIIAGTPGRVLEL 136

Query: 390 IQYYKLIL-----VIVDE-------QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           IQ  KL +     +++DE       +HR  +++ +K T +     +L  +AT  P T  +
Sbjct: 137 IQAKKLKMHEVKTIVLDEADQLVTKEHRETMKKIIKTTLRDR--QLLSFSATLQPETEEV 194

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                  ++ I  +P+        ++ + R  E  E+ +V        Y +C Q ++ K 
Sbjct: 195 -------LNAIAHEPS--------VLRVKRNTE--EKARVT-----HQYLVCDQRDKVK- 231

Query: 498 SNFRSVVERFNSLHE------------------HFTSSIAIIHGRMSDIDKESVMDSFKN 539
                 + R N +H                   +    + I+HG    +++ +++ +F+ 
Sbjct: 232 --LLQKLSRLNGMHALVFVRDIGNLSVYAEKLAYHHVGLGILHGEAKKMERANILSAFER 289

Query: 540 GTCKLLIATTVIEVGIDVVDASIII---IENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           G   LL+AT +   G+D+ D   +I   I N + +    +H+  GR GR  +  + + L 
Sbjct: 290 GEFPLLLATDIAARGLDIDDLPYVIHADIPNEDGY----IHR-SGRTGRAGKEGTVLSLV 344

Query: 597 HP 598
            P
Sbjct: 345 TP 346


>gi|269125741|ref|YP_003299111.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
           curvata DSM 43183]
 gi|268310699|gb|ACY97073.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
           43183]
          Length = 694

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 131/326 (40%), Gaps = 42/326 (12%)

Query: 297 ILQGDVGSGKTLVALIAM-AAAVEAGGQAV---IMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +L      GKT  AL  +     E G Q +    + P+  L       I +Y       V
Sbjct: 39  LLVAPTAGGKTEAALFPLLTVMAEQGWQGLSVLYICPLKALLNNLEPRIAQYAGWLGRTV 98

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLIL----VIVDEQ 403
            +  G+     RR+A+ R       I++ T       L   S+ + +L+     V++DE 
Sbjct: 99  RLWHGDT-SVTRRQAILR---NPPDILLTTPESLESMLISASVDHRRLLSGVRSVVIDEV 154

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP------ 457
           H F    R           +  +T  P+ R  +  ++GD        + AGR+P      
Sbjct: 155 HAFAKDDR-GWHLLCVLERIARLTGRPLQRIGLSATVGDPSGLLAWLQGAGRRPAQVVEP 213

Query: 458 -IKTVIIP----INRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            I++ + P    ++R+  +    K++  L  G+K    C         + R  VE     
Sbjct: 214 AIESAVGPPEIELDRVGNLANAAKIISMLHHGEKRLVFC---------DSRQTVEELGEA 264

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 ++ + H  +S  ++    ++F      +++AT+ +E+GIDV D   +I  N+  
Sbjct: 265 LRKLGVTVFLSHASLSANERRRAEEAFSQARDCVIVATSTLELGIDVGDLDRVIQINSP- 323

Query: 571 FGLAQLHQLRGRVGRGE-EISSCILL 595
           + ++   Q  GR GR   ++ +C+LL
Sbjct: 324 WSVSSFLQRLGRTGRRPGQVRNCLLL 349


>gi|195970129|ref|NP_387145.2| primosome assembly protein PriA [Sinorhizobium meliloti 1021]
 gi|307301620|ref|ZP_07581379.1| primosomal protein N' [Sinorhizobium meliloti BL225C]
 gi|187904220|emb|CAC47618.2| Probable primosomal protein N' (replication factor Y)
           [Sinorhizobium meliloti 1021]
 gi|306903318|gb|EFN33907.1| primosomal protein N' [Sinorhizobium meliloti BL225C]
          Length = 734

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 9/130 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q+ A  D+L  + ++   + ++ G  GSGKT V   A+AA + AG Q +I+ P I + A 
Sbjct: 206 QKQAAADLLAAVEERKFSVSLIDGITGSGKTEVYFEAIAATLRAGKQVLILLPEIALTAS 265

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               F++++             ++    R K   ++  GQ  ++ G   ALF   + +  
Sbjct: 266 ----FLERFQDRFGAKPAEWHSDLAPRMREKVWRQVTTGQVRVVAGARSALF---LPFED 318

Query: 395 LILVIVDEQH 404
           L L+IVDE+H
Sbjct: 319 LGLIIVDEEH 328


>gi|156052539|ref|XP_001592196.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980]
 gi|160385735|sp|A7EM88|FAL1_SCLS1 RecName: Full=ATP-dependent RNA helicase fal1
 gi|154704215|gb|EDO03954.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 399

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 147/354 (41%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + + ++ +GQ HI+ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVG---EDIRKLDYGQ-HIVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT +P      
Sbjct: 157 MIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT-LP------ 209

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E 
Sbjct: 210 ----YDVLDMTTKFMT-DPVRILV----------KRDELTL-EGLKQYFIAV---EKEEW 250

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 251 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 308

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIE----NAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 309 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENY----IHRI-GRSGR 357


>gi|157373674|ref|YP_001472274.1| primosomal protein N' [Shewanella sediminis HAW-EB3]
 gi|157316048|gb|ABV35146.1| primosomal protein N' [Shewanella sediminis HAW-EB3]
          Length = 742

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 10/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P +    Q  A+  + Q   Q      +L+G  GSGKT V L  + + +  G QA+I+ P
Sbjct: 210 PLTLNPEQAIAVATLNQ---QTGYHCTLLEGITGSGKTEVYLALLESVLSKGKQALILVP 266

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            IG+  Q     I ++    ++ V +I   +    R  A ++   G+A IIIGT +    
Sbjct: 267 EIGLTPQT----ISRFKSRFKVQVAVIHSGLTDNQRLAAWQQAKTGEAAIIIGTRSALFT 322

Query: 389 SIQYYKLILVIVDEQHRFGVQQR 411
            + +  +I  I+DE+H    +Q+
Sbjct: 323 PMAFPGVI--ILDEEHDSSFKQQ 343


>gi|156100409|ref|XP_001615932.1| helicase [Plasmodium vivax SaI-1]
 gi|148804806|gb|EDL46205.1| helicase, putative [Plasmodium vivax]
          Length = 528

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 134/315 (42%), Gaps = 39/315 (12%)

Query: 297 ILQGDVGSGKTL-------VALIAMAAAVEAGGQAV-IMAPIGILAQQHYEFIKKYTQNT 348
           I + + GSGKTL       V ++A  +     G  V +MAP   LA+Q  +   K++  +
Sbjct: 154 IGKAETGSGKTLAFILPAFVHILAQPSLKYGDGPIVLVMAPTRELAEQIRQECIKFSIES 213

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQ 403
           +I      G +P++ +  AL++      HI+I         L Q+     ++  +++DE 
Sbjct: 214 KIRNTCAYGGVPKSGQIYALKQ----GVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEA 269

Query: 404 HR-----FGVQQRLKLTQKATAPHVLLMTAT------PIPRTLVLTSLGDIDISKITEKP 452
            +     F +Q R  + Q       L+ +AT       + R L       +++  +T   
Sbjct: 270 DKMLDMGFEIQIRKIVEQIRPDRQTLMWSATWPKEVQSLARDLCKQQPIHVNVGSLTLTA 329

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLH 511
             R  IK  I  I    E I  LK++L    +    I   +E KK ++F +   R + + 
Sbjct: 330 CRR--IKQEIYLIEE-HEKIANLKLLLQRIFRDNDRIIVFVETKKNADFITKALRLDGV- 385

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                    IHG     ++  V++ FK G   +LIAT V   G+D+ D   +I  +  + 
Sbjct: 386 -----PALCIHGDKKQDERRWVLNDFKTGKSPILIATDVASRGLDIKDVKYVINFDFPNQ 440

Query: 572 GLAQLHQLRGRVGRG 586
               +H++ GR GR 
Sbjct: 441 IEDYVHRI-GRTGRA 454


>gi|83746502|ref|ZP_00943553.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|83726833|gb|EAP73960.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
          Length = 566

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 122/296 (41%), Gaps = 37/296 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q Y+ + KY + T +   ++ G +    + + L R       I++ T
Sbjct: 164 RALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRR----GVEILVAT 219

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLV 436
                D     S+   ++ ++++DE  R      L   Q+       ++   P  R TL+
Sbjct: 220 PGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQR-------IINLLPAHRQTLL 272

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I K+      R P    +   N   + + ++   + +G K   +   + ++ 
Sbjct: 273 FSATFSPEIKKLAAS-YLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQRA 331

Query: 497 E----------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E          SN +    R     E    +   IHG  + I++   +++FK GT  +L+
Sbjct: 332 EQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGTVDVLV 391

Query: 547 ATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT V   G+D+     +I      NAE +    +H++ GR GR       + L+ P
Sbjct: 392 ATDVAARGLDISQMPCVINFDLPFNAEDY----VHRI-GRTGRAGASGDALSLFAP 442


>gi|315646176|ref|ZP_07899296.1| primosomal protein N [Paenibacillus vortex V453]
 gi|315278375|gb|EFU41691.1| primosomal protein N [Paenibacillus vortex V453]
          Length = 844

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 27/179 (15%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P + T+ Q+   + I+  + ++   + +L G  GSGKT + L  +   +E   QA+++
Sbjct: 284 STPLALTQEQQVVYRSIVNKLDEREHGVFLLHGVTGSGKTEIYLQTIQRCLEQERQAIVL 343

Query: 328 AP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-AL 385
            P I +  Q    F  ++       V ++   +    R     +I  G+A +++G   A+
Sbjct: 344 VPEISLTPQMVERFKARFGDR----VAVMHSRLSDGERYDEWRKIREGRASVVVGARSAV 399

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQ--------------RLKLTQKATAPHVLLMTATP 430
           F     + +L L+I+DE+H    +Q              R  LT  A    V+L +ATP
Sbjct: 400 F---APFDRLGLIIMDEEHETSYKQEETPKYHARDVAIHRASLTGAA----VILGSATP 451


>gi|313905224|ref|ZP_07838592.1| primosomal protein N' [Eubacterium cellulosolvens 6]
 gi|313469977|gb|EFR65311.1| primosomal protein N' [Eubacterium cellulosolvens 6]
          Length = 741

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 18/168 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  A++ I ++    +R   +L G  GSGKT V +  +   ++ G Q +++ P   L
Sbjct: 211 TDEQRRAVEGICEEWRTSDRPC-LLMGVTGSGKTQVYMELIERTLQEGKQVIVLIPEISL 269

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
           +   ++ ++++       V ++   M +  R    E+I +G A I+IG   ALF     +
Sbjct: 270 S---WQTVRRFRGRFGGRVTVLHSKMSRGERFDQFEKIKNGSADIVIGPRSALFS---PF 323

Query: 393 YKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP 430
             L L+I+DE+           R+  ++      +    HV++ +ATP
Sbjct: 324 PNLGLIIIDEEQENSYRSETAPRYDARETALERARMENAHVVMGSATP 371


>gi|307328239|ref|ZP_07607417.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306886073|gb|EFN17081.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 503

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 151/371 (40%), Gaps = 43/371 (11%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  +   A+++ P   LAQQ  + +  Y ++ ++ +
Sbjct: 118 RGRTGSGKTLAFGLALLARTAGQRAEPRQPLALVLVPTRELAQQVTDALTPYARSVKLRL 177

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHR-- 405
             + G MP   +   L     G A +++ T    +D I     +  ++ + ++DE  +  
Sbjct: 178 ATVVGGMPIGRQANVLR----GGAEVVVATPGRLKDLIDRGDCRLNQVAITVLDEADQMA 233

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIK 459
              F  Q    L Q       +L +AT + R    LV   L D  +  +         ++
Sbjct: 234 DMGFMPQVTALLDQVRPEGQRMLFSAT-LDRNVDRLVRRYLTDPVVHSVDPSAGAVTTME 292

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
             ++ ++  D+     ++   EG+   ++          + +  V+R      +     A
Sbjct: 293 HHVLHVHGADKHRTTTEIAAREGRVIMFL----------DTKHAVDRLTQDLLNSGVRAA 342

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG  S   +   +  FK G   +L+AT V   GI V D  +++  +        LH+ 
Sbjct: 343 ALHGGKSQPQRTRTLAQFKTGHVTVLVATNVAARGIHVDDLDLVVNIDPPTDHKDYLHR- 401

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE--GEILGIK 637
            GR  R  E  S + L   P  +   TRL     T  G +     ++  +E  G I G +
Sbjct: 402 GGRTARAGESGSVVTLVT-PNQRRDMTRLM----TAAGIVPRTTQVRSGEEALGRITGAQ 456

Query: 638 Q-SGMPKFLIA 647
             SG+P  + A
Sbjct: 457 APSGIPVTITA 467


>gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
 gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
          Length = 719

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 148/354 (41%), Gaps = 53/354 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT----LVALIAMAAAVEAGG-----Q 323
           P+  QE  I  +L      N ++ + Q   G+GKT    L AL  MA   +  G     Q
Sbjct: 151 PSPIQEQTIPPLLD----GNDVVGLAQ--TGTGKTAAFALPALSRMAELADINGVSRDTQ 204

Query: 324 AVIMAPIGILAQQHYEFIKKY-TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            +++AP   LA Q  E    Y T      V  I G  P   +   L R     A +++GT
Sbjct: 205 VLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRR----GAQVVVGT 260

Query: 383 HALFQD----------SIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--APHVLLMTATP 430
                D          ++QY  L+L   DE  R G  + ++   + T  A  V L +AT 
Sbjct: 261 PGRVIDHLEKGSLDLSNLQY--LVLDEADEMLRMGFAEDVETILEGTPDAKQVALFSAT- 317

Query: 431 IP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKK 484
           +P   R +    L D    ++  K      I+   + +   +++D +   L+V   +G  
Sbjct: 318 MPNSIRKIAQQYLNDPTEVRVKTKTTTGANIRQRYMQVMHSHKLDAMTRVLEVENYDG-- 375

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              I   +  KKE+    V ++  +    F +  A I+G +    +E  +D+ ++G   +
Sbjct: 376 ---IIVFVRTKKETE--EVADKLKA--RGFQA--AAINGDIPQQLRERTVDALRDGRIDI 426

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           L+AT V   G+DV   S+++  +  H   + +H++ GR GR       IL   P
Sbjct: 427 LVATDVAARGLDVERISLVVNYDIPHDTESYVHRI-GRTGRAGRDGEAILFVTP 479


>gi|66804721|ref|XP_636093.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
 gi|60464394|gb|EAL62541.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
          Length = 2417

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 6/103 (5%)

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE---SVMDSFKNGTCKLLIATTVIEVG 554
           SN  S++++     E+  +   + H  +  +D E   S++  F++G C+L++ T V+E G
Sbjct: 667 SNLTSMLKK-EPFQEYLHTKRLVGHNGVDGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEG 725

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           IDV D +I+I  +     L  L Q RGR  R +  S  I++Y+
Sbjct: 726 IDVQDCNIVICYDG-ILSLKSLIQRRGR-ARSKNESKFIIIYN 766


>gi|255717290|ref|XP_002554926.1| KLTH0F17050p [Lachancea thermotolerans]
 gi|238936309|emb|CAR24489.1| KLTH0F17050p [Lachancea thermotolerans]
          Length = 478

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 134/318 (42%), Gaps = 55/318 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+K QE A+  +L +  +      I Q   G+GKT    + M + V+      QA+ +AP
Sbjct: 111 PSKIQERALPLLLHNPPRN----MIAQSQSGTGKTAAFSLTMLSRVDPAVPQTQAICLAP 166

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA+Q  E I++  + T+I  ++I  +        + E+     A I++GT     D 
Sbjct: 167 ARELARQTLEVIQEMGKFTKISSQLIVPD--------SFEKNKPVNAQIVVGTPGTVLDL 218

Query: 389 ----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA-TPIPRTLVLTSLGDI 443
                IQ  ++ + ++DE           L ++      L +    P    LVL S    
Sbjct: 219 MRRKMIQLGQVKVFVLDEADNM-------LDKQGLGDQCLRVKKFLPKSAQLVLFS---- 267

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------ 497
                T     R   + V+   N ++  ++R +V ++  K+ +  C     K E      
Sbjct: 268 ----ATFDDGVRNYARKVVPDANSLE--LQRNEVNVAAIKQLFMDCTDENNKFEVLTELY 321

Query: 498 ------SN--FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                 S+  F    +  N L+     +   ++I+HG +   +++ ++D F+ G  K+LI
Sbjct: 322 GLLTIGSSIIFVQTKQTANVLYAKLKQAGHQVSILHGDLQASERDRLIDDFREGRSKVLI 381

Query: 547 ATTVIEVGIDVVDASIII 564
            T V+  GID+   S+++
Sbjct: 382 TTNVLARGIDIPTVSMVV 399


>gi|227823631|ref|YP_002827604.1| primosome assembly protein PriA [Sinorhizobium fredii NGR234]
 gi|227342633|gb|ACP26851.1| primosomal protein N' [Sinorhizobium fredii NGR234]
          Length = 734

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 19/166 (11%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q+ A  D+L  +      + ++ G  GSGKT V   A+AA + AG Q +I+ P I + A 
Sbjct: 206 QKEAAADLLAAVEDGKFSVSLIDGVTGSGKTEVYFEAIAATLRAGKQVLILLPEIALTAG 265

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               F++++             ++    R K   ++  GQ  ++ G   ALF   + + +
Sbjct: 266 ----FLERFQDRFGAKPAEWHSDLAPRTREKVWRQVTTGQVRVVAGARSALF---LPFEE 318

Query: 395 LILVIVDEQHRFGVQQRLKLTQKA----------TAPHVLLMTATP 430
           L L+IVDE+H    +Q  ++   A          +A  V+L++ATP
Sbjct: 319 LGLIIVDEEHDPAYKQEDRVFYNARDMAVVRGRISAFPVVLVSATP 364


>gi|168037666|ref|XP_001771324.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677413|gb|EDQ63884.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 127/317 (40%), Gaps = 53/317 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++      Q+ V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYQLLECQALVLAPTRELAQQIEKVMRALGDYLQVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT          +AL  D+I+ +  +L   DE 
Sbjct: 141 ACVGGTSV----REDQRILQAGVHVVVGTPGRVYDMLRRNALRADAIKCF--VLDEADEM 194

Query: 404 HRFGVQQRLK-----LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
              G + ++      L QK     V + +AT  P  L +T        K   KP      
Sbjct: 195 LSRGFKDQIYDIFQLLPQKL---QVGVFSATMPPEALEITR-------KFMNKP------ 238

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFN 508
             V I + R +  +E +K       +  W    + +  E+          N R  V+   
Sbjct: 239 --VKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDLYETLAITQSVIFINTRRKVDWLT 296

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  + 
Sbjct: 297 DKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356

Query: 569 EHFGLAQLHQLRGRVGR 585
                  LH++ GR GR
Sbjct: 357 PTQPENYLHRI-GRSGR 372


>gi|304319730|ref|YP_003853373.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis
           HTCC2503]
 gi|303298633|gb|ADM08232.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis
           HTCC2503]
          Length = 460

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 159/375 (42%), Gaps = 59/375 (15%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------L 308
           + ++ KI + +  +    PT  Q  AI + L+       +L I Q   G+GKT      +
Sbjct: 19  LGLDTKILEALTESGYTHPTPIQADAIPEALRGRD----VLGIAQ--TGTGKTASFVLPV 72

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           +  +A   A     +++I+AP   LA Q  E  +KY +N ++ + ++ G +  A +   L
Sbjct: 73  IHRLARGRARARMPRSLILAPTRELAAQVSEQFEKYGKNHKLSMALLIGGVSFADQDAKL 132

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQ 416
            R       ++I T     D  +  KL+L     ++VDE  R         +++  KLT 
Sbjct: 133 TR----GVDVLIATPGRLLDHHERGKLLLTGLEVMVVDEADRMLDMGFIPDLERIFKLTP 188

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKI-TEKPAGRKPIKTVIIPINRIDEVIERL 475
                  L  +AT  P    LT       ++I   KPA     KT+   I R+    ++L
Sbjct: 189 FTR--QTLFFSATMPPEIQRLTDQFLSAPARIEVAKPA--TTAKTITQRIARLPSGEDKL 244

Query: 476 K-------VVLSEG-KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           K       V  +E  K     C      ++ N   + +   SL EH   +  I HG +  
Sbjct: 245 KRAALRHLVETAENLKNGIIFC-----NRKKNVDVIAK---SLQEHGFDARPI-HGDLPQ 295

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRV 583
             +   +  F++G  KLL+A+ V   G+D+ D S +    +  NA+ +    +H++ GR 
Sbjct: 296 SFRTETLQMFRDGGLKLLVASDVAARGLDIPDVSHVFNFSVPINADDY----VHRI-GRT 350

Query: 584 GRGEEISSCILLYHP 598
           GR   +   ++L  P
Sbjct: 351 GRAGRLGHAVMLVTP 365


>gi|258571293|ref|XP_002544450.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704]
 gi|237904720|gb|EEP79121.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704]
          Length = 399

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 145/354 (40%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAIQSRAIVQICKGRDT------IAQAQSGTGKTATFAISILQVIDTALRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + L+   HGQ H++ GT     D
Sbjct: 101 PTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLD---HGQ-HVVSGTPGRVAD 156

Query: 389 SIQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L      ++++DE       G + ++    +   P   V++++AT     L +T
Sbjct: 157 MIRRRHLRTRHIKMLVLDEADDLLARGFRDQIYDVYRYLPPATQVVVLSATLPYDVLSMT 216

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +       K    P              RI  +++R ++ L EG K Y+I     EK+E 
Sbjct: 217 T-------KFMTDPV-------------RI--LVKRDELTL-EGLKQYFIAV---EKEEW 250

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 251 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 308

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 309 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 357


>gi|229159014|ref|ZP_04287070.1| ATP-dependent RNA helicase dbpA [Bacillus cereus ATCC 4342]
 gi|228624433|gb|EEK81204.1| ATP-dependent RNA helicase dbpA [Bacillus cereus ATCC 4342]
          Length = 481

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 135/319 (42%), Gaps = 32/319 (10%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI-SKITEKPAG--RKPIKT 460
             F  Q    + +  T    +L +AT +P  +   S   ++  + I  K AG     I+ 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH 219

Query: 461 VIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            +  + R +E +  LK V + E   +  I  + +E  +  +R +  R N   +       
Sbjct: 220 TLFEV-REEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-NRVNYPCDK------ 271

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      + +H+ 
Sbjct: 272 -IHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRT 330

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       I    P
Sbjct: 331 -GRTGRAGNSGKAITFITP 348


>gi|254445656|ref|ZP_05059132.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198259964|gb|EDY84272.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 426

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 154/370 (41%), Gaps = 48/370 (12%)

Query: 254 PINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           PIN       K L  + F  PT  QE AI  +L+      R L I     G+GKT    +
Sbjct: 38  PIN-------KALSELGFEKPTPIQEQAIPIVLE-----GRDL-IGSAQTGTGKTAAFGL 84

Query: 313 AMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +   +  G   Q +I+ P   LA Q  E +  + +N  I + +I G +    + K +E 
Sbjct: 85  PILQRIVPGKPFQCLILEPTRELAAQVEEALTVFAKNLGIKIGLIYGGVKYGGQLKMME- 143

Query: 371 IAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GV---QQRLKLTQKAT 419
              G A II+ T       L Q ++   ++  +++DE  R    G     +R+     + 
Sbjct: 144 ---GGAEIIVATPGRLLDHLGQGNLSLKQMDYLVLDEVDRMLDMGFLPDVKRIVQNYCSA 200

Query: 420 APHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-- 474
               LL TAT +P   +TL    L +  + +I +  +  + +     P      V+ER  
Sbjct: 201 ERQTLLFTAT-MPAAIKTLTGWVLKNPAVVEIGKNRSAAETVSHAFYP------VVERQK 253

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
            K++L   ++ ++    I  + + N   +  R     E     +A +H   S  ++ + +
Sbjct: 254 YKLLLELLERTHYESVLIFTRTKFNADMITRRL----ERLDHKVAALHSDRSQSERTAAL 309

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+G  ++L+AT +   G+D+   + +I  +        +H++ GR GR  +      
Sbjct: 310 KGFKDGRYEVLVATDIAARGLDIAGVTHVINYDVPLHAEDYVHRI-GRTGRASKEGDAFT 368

Query: 595 LYHPPLSKNS 604
           L      KN+
Sbjct: 369 LLTEDEVKNA 378


>gi|118639520|gb|ABL09512.1| ATP-dependent RNA helicase [Halobacillus halophilus DSM 2266]
          Length = 395

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 141/340 (41%), Gaps = 55/340 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +PT  Q+ AI  ++           I Q   G+GKT   L+ +   +   EA  QAVI+ 
Sbjct: 25  APTPIQQEAIPALMDGRDV------IAQAQTGTGKTFAFLLPILQNIRVDEASVQAVIVT 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGN--MPQAHRRKALERIAHGQAHIIIGTHALF 386
           P   LA Q  E ++K       ++ +  G     QAH+         GQAHI+I T    
Sbjct: 79  PTRELALQITEEVRKLKTEDMHVLAVYGGQDVAKQAHK-------LDGQAHIVIATPGRM 131

Query: 387 QD-------SIQYYK-LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLV 436
            D       S++  K ++L   D+    G    +K  L+Q   A   +L +AT    T  
Sbjct: 132 LDHLRRGTISLEAVKYMVLDEADQMLEAGFLPDVKDILSQTPEAKQTMLFSATI---TTQ 188

Query: 437 LTSLGD---IDISKIT--EKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEGKK--AY 486
           +  LG     D  +IT  EK    + IK ++       + D +IE    ++ E +   A 
Sbjct: 189 VNQLGKKILKDPRRITVQEKTVTLEGIKQLVYETTDRAKQDTLIE----IMQEHRPFLAL 244

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C      ++ N        ++L  H   +   +HG +S   +E VM  F++   + L+
Sbjct: 245 IFCRTKRRARKLN--------DALLSHGFEADE-LHGDLSQAKREKVMKRFRDAKIQYLV 295

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           AT V   G+DV   + +   +      + +H++ GR GR 
Sbjct: 296 ATDVAARGLDVEGVTHVFNYDIPQDPESYIHRI-GRTGRA 334


>gi|2500520|sp|Q40467|IF414_TOBAC RecName: Full=Eukaryotic initiation factor 4A-14; Short=eIF-4A-14;
           AltName: Full=ATP-dependent RNA helicase eIF4A-14
 gi|485943|emb|CAA55742.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 121/312 (38%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++   L        +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLS 196

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V + +AT  P  L +T        K   KP        V I
Sbjct: 197 RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMSKP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R D  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 361

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 362 NYLHRI-GRSGR 372


>gi|305667396|ref|YP_003863683.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170]
 gi|88709444|gb|EAR01677.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170]
          Length = 432

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 144/346 (41%), Gaps = 44/346 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           SPT  QE A+  +L+       +L   Q   G+GKT    I +   +    Q        
Sbjct: 23  SPTPIQEQAVPILLKGKD----LLGCAQ--TGTGKTAAFAIPILQQIHNDRQSNDRHRKI 76

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   LA Q  E    Y + T I   +I G + Q  + +AL+        I+I T
Sbjct: 77  KALVVTPTRELAIQIGESFTAYGKFTGIRNTVIFGGVKQGKQTQALKN----GVDILIAT 132

Query: 383 HA-----LFQDSIQYYKLILVIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATPIPR 433
                  + Q  I    +   ++DE  +      +    K+  K       L  +  +P+
Sbjct: 133 PGRLLDLMNQGFISLRDIEYAVLDEADQMLDMGFIHDIRKIIAKLPPKRQSLFFSATMPK 192

Query: 434 TLVLTS---LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
            +V  S   LGD +   I  + A  + ++ ++  +N+ ++V  +L V L E +    +  
Sbjct: 193 DIVALSRTILGDFERVTIKPEQATAEKVEQLVYFVNKSNKV--KLLVHLLENRPNSSVLV 250

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
               K  +N   +V++          + A IHG  S   ++  +  FK G  K+LIAT +
Sbjct: 251 FSRTKHGAN--KIVKKLG----QADIASAAIHGNKSQTARQKALGDFKAGELKVLIATDI 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
              GIDV D ++++  +  +     +H++ GR GR    G  IS C
Sbjct: 305 AARGIDVDDLALVVNFDLPNVPETYVHRI-GRTGRASASGIAISFC 349


>gi|319744324|gb|EFV96687.1| competence protein FA [Streptococcus agalactiae ATCC 13813]
          Length = 429

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 159/366 (43%), Gaps = 62/366 (16%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q    +++L+ +S K  +L  +    G+GKT +   ++A  ++ GG   I +P I +
Sbjct: 93  TPYQNEVSEELLKGISSKENLL--VHAVTGAGKTEMIYHSVAKVIDTGGSVCIASPRIDV 150

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
             + H    K+ + + +  + ++ G  P +++R  L          I  TH L +    Y
Sbjct: 151 CLELH----KRLSNDFRCAITLMHGESP-SYQRSPL---------TIATTHQLLKF---Y 193

Query: 393 YKLILVIVDEQHRF----------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           +   L+IVDE   F          GV+Q LK  +  T+  +   + T + R +    L  
Sbjct: 194 HAFDLLIVDEVDAFPYVDNPILYHGVKQALK--ENGTSIFLTATSTTELERKVARKELKK 251

Query: 443 IDISKITEKPAGRKPIKTVIIP----INRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           + +++       R     ++IP    ++ I + ++  K+      K Y    Q+  K+  
Sbjct: 252 LHLAR-------RFHANPLVIPEMVWVSGIQKSLQTQKL----PPKLY----QLINKQRQ 296

Query: 499 NFRSVVERFNSLHEH--FTSSI--AIIHGRMSDIDKES-----VMDSFKNGTCKLLIATT 549
               ++  F  + E   FT  +  A    ++  +  +S     ++  F++    +L++TT
Sbjct: 297 TRYPLLLFFPHISEGQVFTEMLRQAFPMEKIGFVSSKSTSRLKLVQDFRDNKLSILVSTT 356

Query: 550 VIEVGIDVVDASIIIIENAEH-FGLAQLHQLRGRVGRGEEISSCILLY-HPPLSKNSYTR 607
           ++E G+      + +I+   H F  + L Q+ GRVGR  E    +L + H   SK+ +  
Sbjct: 357 ILERGVTFPSVDVFVIQANHHLFTKSSLVQISGRVGRALERPEGLLYFLHDGKSKSMHQA 416

Query: 608 LSVLKN 613
           +  +KN
Sbjct: 417 IKEIKN 422


>gi|225010798|ref|ZP_03701266.1| ATP-dependent DNA helicase, RecQ family [Flavobacteria bacterium
           MS024-3C]
 gi|225005006|gb|EEG42960.1| ATP-dependent DNA helicase, RecQ family [Flavobacteria bacterium
           MS024-3C]
          Length = 630

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 9/87 (10%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF----G 572
           S+AI HG +S I++E+ ++++     K++IAT    +GID  + S +I     HF     
Sbjct: 252 SVAIYHGGLSKIEREAALNNWLKDHAKIMIATNAFGMGIDKGNVSDVI-----HFQIPES 306

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP 599
           L   +Q  GR GR  + ++ I+L+  P
Sbjct: 307 LENYYQESGRAGRDGDPANAIILWATP 333


>gi|213418139|ref|ZP_03351205.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 270

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q    F +++  NT   VE++
Sbjct: 98  LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERF--NTP--VEVL 153

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH--RFGVQQRL 412
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H   +  Q+  
Sbjct: 154 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQEGW 210

Query: 413 KLTQKATAPH--------VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +   +  A +        ++L +ATP   TL         + ++T +    +P
Sbjct: 211 RYHARDLAVYRAHSEQIPIILGSATPALETLCNVRQKKYRMLRLTRRAGNARP 263


>gi|86171847|ref|XP_966291.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Plasmodium
           falciparum 3D7]
 gi|46361260|emb|CAG25121.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Plasmodium
           falciparum 3D7]
 gi|223673362|gb|ACN12798.1| DEAD-box helicase 9 [Plasmodium falciparum]
          Length = 601

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 123/322 (38%), Gaps = 47/322 (14%)

Query: 302 VGSGKTLVALIAMAAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L+     +       + G   +I++P   L  Q Y+  K   +       I
Sbjct: 194 TGSGKTLAFLVPSINILYNIKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGI 253

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHRF-- 406
           I G M +   +K   +  HG  +I+I T     D +Q      Y  LI +I+DE  R   
Sbjct: 254 IIGGMSRNEEKK---KFIHG-INILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQ 309

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G ++ + L  K         L +AT   +   L  L         +KP        + I
Sbjct: 310 IGFEEEINLIIKRLPKKRQTALFSATQTTKVESLIRLS-------LQKP--------IFI 354

Query: 464 PINRIDEVIERLK--VVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHF 514
            +      +ERL+    L +  K + +     +K  S       N    V+ +N L  + 
Sbjct: 355 EVTTKIATVERLQQGYALVDEDKRFLLLFTFLKKNMSKKIMVFFNNCMSVQFYNDLLNYI 414

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 IHG+     +      F    C +L+ T V   G+D+ + + II  +       
Sbjct: 415 DIPTYCIHGKKKQNKRLKSFHDFSAAKCAILLCTNVAARGLDIPNVNYIIQYDPPDDSKE 474

Query: 575 QLHQLRGRVGRGEEISSCILLY 596
            +H++ GR  RG++ +   +++
Sbjct: 475 YIHRV-GRTCRGQDSNGSAIIF 495


>gi|54301892|ref|YP_131885.1| ATP-dependent RNA helicase DbpA [Photobacterium profundum SS9]
 gi|46915312|emb|CAG22085.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
           SS9]
          Length = 462

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 141/323 (43%), Gaps = 44/323 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I QG  GSGKT    + +   +       Q++++ P   LA Q  + I+K  +    I V
Sbjct: 45  IAQGKTGSGKTAAFGLGLLEKLNVKRFRVQSLVLCPTRELADQVAKEIRKLARTIHNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G MP   +  +LE   HG AHII+GT    ++ ++   L L     +I+DE  R  
Sbjct: 105 LTLCGGMPFGPQIGSLE---HG-AHIIVGTPGRIEEHVRKGTLNLDDLEILILDEADRML 160

Query: 407 --GVQQRLKLTQKATAPH---VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
             G Q  L     A AP     LL +AT  P+   + S+ D    +I  KP   K     
Sbjct: 161 EMGFQDSLDEIIDA-APQRRQTLLFSATYPPQ---IKSVAD----RIMHKPVMAK----- 207

Query: 462 IIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNF------RSVVERFNSLHEH 513
            +     +  I++   KV  +E +        ++ + ES        R   E  + L ++
Sbjct: 208 -VESTHDESTIQQHFYKVDGNEQRLTALRLLLLKHRPESTVVFCNTKREAQEVSDDLVDY 266

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             SSIA+ HG +   +++  +  F N +  +L+AT V   G+D+     +I  +      
Sbjct: 267 GFSSIAL-HGDLEQRERDQALVLFANKSTSVLVATDVAARGLDIDSLDAVINYHLARDTE 325

Query: 574 AQLHQLRGRVGR-GEEISSCILL 595
             +H++ GR GR G +  +C L+
Sbjct: 326 VHVHRI-GRTGRAGSKGIACSLI 347


>gi|332685778|ref|YP_004455552.1| helicase PriA [Melissococcus plutonius ATCC 35311]
 gi|332369787|dbj|BAK20743.1| helicase PriA essential for oriC/ DnaA-independent DNA replication
           [Melissococcus plutonius ATCC 35311]
          Length = 809

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/149 (19%), Positives = 70/149 (46%), Gaps = 7/149 (4%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++ ++ +P +    Q+ A+  I+  ++ +     +L+G  GSGKT + L  +A  +  G 
Sbjct: 262 KQFIKTLPLTLNTEQQIAVDKIIHSINTQQNKTYLLEGITGSGKTEIYLQVIAETLNQGK 321

Query: 323 QAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++ P I +  Q  + F  ++       V ++   +    +     ++   +A ++IG
Sbjct: 322 TAIMLVPEISLTPQTVHRFKSRFGDQ----VAVMHSGLSHGEKYDEWRKVERKEARVVIG 377

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +     ++   L ++I+DE+H    +Q
Sbjct: 378 ARSAIFSPVE--SLGVIIIDEEHEASYKQ 404


>gi|300122033|emb|CBK22607.2| unnamed protein product [Blastocystis hominis]
          Length = 408

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 140/336 (41%), Gaps = 49/336 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AI  I+     K R + I Q   G+GKT V  I +   ++      QA+I++P
Sbjct: 19  PSAIQQRAILPII-----KGRDV-IAQSQSGTGKTGVFCIGVLQNIDPSLMETQALILSP 72

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  + +       ++      G    +     + R+ +G   ++ GT     D 
Sbjct: 73  TRELAEQSQKVLLSIGDCMKVQCHACVGGKSLSD---DIRRLDYG-VQVVSGTPGRVYDM 128

Query: 390 IQYYKL------ILVI--VDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I    L      ILVI   DE    G +++L    +   P   V+L++AT     L +TS
Sbjct: 129 INRRHLRTRNIKILVIDEGDEMLNQGFKEQLYDIYRYLPPATQVVLVSATMPKEVLDMTS 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW----ICPQIEEK 495
                  K   +P        V I + R +  +E +K      ++  W    +C      
Sbjct: 189 -------KFMNEP--------VKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYNNL 233

Query: 496 KES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +      N R  VE   +       +++ +HG M   +++ +M+ F+ G  ++LIAT 
Sbjct: 234 TITQAVIFCNTRRKVEWLAAKLREANFTVSSMHGDMPQKERDRIMEEFRAGNSRVLIATD 293

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           V   G+DV   S++I  +  +     +H++ GR GR
Sbjct: 294 VWGRGLDVQQVSLVINYDLPNSRELYIHRI-GRSGR 328


>gi|259418800|ref|ZP_05742717.1| ATP-dependent rna helicase, dead/deah box family [Silicibacter sp.
           TrichCH4B]
 gi|259345022|gb|EEW56876.1| ATP-dependent rna helicase, dead/deah box family [Silicibacter sp.
           TrichCH4B]
          Length = 681

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 133/331 (40%), Gaps = 50/331 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV-EAGGQ--------AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  +    GQ        A+++AP   LA Q    +     +
Sbjct: 35  LVSAQTGSGKTVGFGLAIAPTILNEDGQFERAASPLALVIAPTRELALQVKRELSWLYGD 94

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDE 402
              ++    G M     R+ALER     AHI++ T    +D     SI    +  V++DE
Sbjct: 95  AGAVLASCVGGMDMRDERRALER----GAHIVVATPGRLRDHITRGSIDLSGVAAVVLDE 150

Query: 403 QHR---FGVQQRLK--LTQKATAPHVLLMTAT---PIPRTLVLTSLGDID-ISKI--TEK 451
                  G ++ L+  L +       LL +AT   PI   L  T   D   IS I  +E+
Sbjct: 151 ADEMLDLGFREDLEFILEETPEDRQTLLFSATVSKPIA-ALAQTYQNDAQRISTINKSEQ 209

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            +       V+ P +  + +I  L+    E   A            +N R+ V R  +  
Sbjct: 210 HSDISYFSHVVAPHDIENAIINVLR--FHEAPNAIVF---------ANTRAAVNRLLTRL 258

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            +    +  + G +S  ++   + + ++G  ++ +AT V   GID+ +  +++     H 
Sbjct: 259 SNRGFQVVALSGELSQSERAGALQAMRDGRARICVATDVAARGIDLPNLDLVV-----HA 313

Query: 572 GLAQLHQL----RGRVGRGEEISSCILLYHP 598
            L   H+      GR GR     +  L+  P
Sbjct: 314 DLPSSHETLLHRSGRTGRAGRKGASALMVTP 344


>gi|255975964|ref|ZP_05426550.1| helicase [Enterococcus faecalis T2]
 gi|255968836|gb|EET99458.1| helicase [Enterococcus faecalis T2]
          Length = 449

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 146/345 (42%), Gaps = 39/345 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT+ QE  I  I +  S       I Q   GSGKT   L+ +   V+      Q VI AP
Sbjct: 25  PTEVQEKLIPIIKKGKSV------IGQSQTGSGKTHTFLLPLMDKVKPTIDEVQIVITAP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q Y+  ++  + +Q  +++ +  +    +++ L ++ H Q H++IGT     D 
Sbjct: 79  SRELANQIYQEAQQLARFSQPEIQV-SNFVGGTDKQRQLNKLKHQQPHVVIGTPGRILDM 137

Query: 389 ----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
               +++ +     +VDE         L +   A    +    A  +P  L +       
Sbjct: 138 MNEQALKVHTAFAFVVDE-----ADMTLDMGFLAEVDQI----AGRLPEKLQMLVFSATI 188

Query: 445 ISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
             K+  +P  +K    P+   I P   I E I+   ++ ++GK +  I  Q+        
Sbjct: 189 PEKL--RPFLKKYLENPVIEHIKPKAVISETIDNW-LISTKGKNSNQIIYQLLTIGHPYL 245

Query: 500 ---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +  +R + + ++       +A IHG ++  +++ VM   +N   + ++AT +   
Sbjct: 246 AIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GID+   S +I     H     +H++ GR GR     + I LY P
Sbjct: 306 GIDIEGVSHVINAEVPHELDFFIHRV-GRTGRNGLNGTAITLYSP 349


>gi|224036359|pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-Eif4a
 gi|224036361|pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-Eif4a
          Length = 414

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 81  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 141 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 197

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 198 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 242

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 243 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 302

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 303 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353


>gi|78224528|ref|YP_386275.1| primosomal protein n [Geobacter metallireducens GS-15]
 gi|78195783|gb|ABB33550.1| replication restart DNA helicase PriA [Geobacter metallireducens
           GS-15]
          Length = 746

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/268 (20%), Positives = 109/268 (40%), Gaps = 36/268 (13%)

Query: 249 KEIGIPINVEGKIAQKILR------NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +E+G+ +  E ++ +   R      + P      Q  A   I+  +        +L G  
Sbjct: 183 RELGLVVTEEREVYRDPFREESVTPDAPLPLNPGQTEARDRIVAAIDTGRFAPFLLHGVT 242

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT V L  +A  ++AG  A+++ P   L  Q    + ++ +  +  + ++   +   
Sbjct: 243 GSGKTEVYLQTIAHLLDAGRTALVLVPEIALTPQ---LVNRFRRRFRCGIAVLHSGLSDG 299

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH----------RFGVQQRL 412
            R     RI  G+  I+IG  +     ++  ++ +++VDE+H          R+  +   
Sbjct: 300 ERYDEWRRIRRGEVAIVIGARSAIFAPLE--RIGMIVVDEEHESSYKQSEGFRYNARDLA 357

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            +  K     V+L +ATP   T      G + +  + E+  G        +P+   +   
Sbjct: 358 LVRGKMEKASVVLGSATPQVTTWHAAVTGKLTLLSLPERVNG--------LPVPHAE--- 406

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNF 500
               ++ + GKKA  I P + +   +N 
Sbjct: 407 ----IIDARGKKADAILPLLADATAANL 430


>gi|21243124|ref|NP_642706.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21108643|gb|AAM37242.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 458

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 123/292 (42%), Gaps = 44/292 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + ++K      N ++
Sbjct: 43  IAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQVGKQLRKLATGIPNMKL 102

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +V  +TG MP   +  +LE  AH    +++GT    Q+  +   L L     +++DE  R
Sbjct: 103 VV--LTGGMPLGPQLASLE--AH-DPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADR 157

Query: 406 F---GVQQRLKLTQKATAPH--VLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKP 457
               G ++ ++        H   LL +AT  P   RTL    L              ++P
Sbjct: 158 MLDMGFEEPIREIASRCDKHRQSLLFSAT-FPDSIRTLARELL--------------KEP 202

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHE 512
           ++  +   +   E+ ++   V    ++       +    ES     N R  V+      +
Sbjct: 203 VEITVEGADSAPEIDQQFFEVDPTYRQKAVAGLLLRFNPESSVVFCNTRKEVDEVAGSLQ 262

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            F  S   +HG M   D++ V+  F N +C +L+A+ V   G+DV D S ++
Sbjct: 263 EFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVV 314


>gi|71005310|ref|XP_757321.1| hypothetical protein UM01174.1 [Ustilago maydis 521]
 gi|74703958|sp|Q4PFD9|PRP5_USTMA RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|46096725|gb|EAK81958.1| hypothetical protein UM01174.1 [Ustilago maydis 521]
          Length = 1156

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/339 (20%), Positives = 139/339 (41%), Gaps = 41/339 (12%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+  L+ M   ++         G   +IM P   LA Q Y  ++ + +   +   
Sbjct: 522 TGSGKTMAFLLPMFRHIKDQRPVEPSEGPVGIIMTPTRELAVQIYREMRPFIKALGLRAA 581

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G  P + +   +++ A     I++ T     D +          Y++  +++DE  R
Sbjct: 582 CVYGGAPISEQIAEMKKTAD----IVVATPGRLIDLLTANSGRVTNLYRVTYLVLDEADR 637

Query: 406 FGVQQRLKLTQKATAPHVL--LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                   +      P V+  L    P  +T++ ++     +  +  K    KP++  + 
Sbjct: 638 --------MFDMGFEPQVMKILNNIRPDRQTVLFSATFPKQMESLARKVLKNKPLEITVG 689

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSV--VERFNSLHEHFTSSI- 518
             + +   IE++  V SE  K + +   + E   +E + R++  V+R  +  +     I 
Sbjct: 690 GRSVVAAEIEQIVEVRSEDTKFHRLLEILGELYNREKDARTLIFVDRQEAADDLLKDLIR 749

Query: 519 -----AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  +HG    +D++  +  FK G   ++ AT+V   G+DV    ++I  +  +   
Sbjct: 750 KGYVTMSLHGGKDQVDRDETISDFKAGNVPIVTATSVAARGLDVKQLKLVINYDVPNHME 809

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             +H+  GR GR  +  +CI    P   + +   ++ LK
Sbjct: 810 DYVHRA-GRTGRAGQKGTCITFITPEQDRYARDIIAALK 847


>gi|308274050|emb|CBX30649.1| hypothetical protein N47_E41610 [uncultured Desulfobacterium sp.]
          Length = 820

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 18/169 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           PT  QE+ I ++L  +  K     +L G  GSGKT V +   +AA++ G   +++ P I 
Sbjct: 277 PTHEQENVISNVLNFLG-KGFSPFLLNGVTGSGKTEVYMKLASAAIDRGYSVLVLVPEIA 335

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +++Q    F  ++ +     V I+   +    +     RI  G+  I IG  +     + 
Sbjct: 336 LISQIEKRFRARFGE----CVAILHSGLSSGEKFDQWNRITDGRISITIGARSAVFAPLS 391

Query: 392 YYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP 430
              + L++VDE+H          R+  +    +  K     VLL +ATP
Sbjct: 392 --NIGLIVVDEEHDSSYKQEGGLRYNARDLAVVRAKLENCIVLLGSATP 438


>gi|307278457|ref|ZP_07559532.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
 gi|306504963|gb|EFM74158.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
          Length = 536

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 139/337 (41%), Gaps = 42/337 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + M   ++A     Q +++AP   LA Q  E + +  ++ +I V+
Sbjct: 63  IGQAQTGTGKTAAFGLPMLNKIDADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQ 122

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHR 405
            + G      + + L+     + HI++GT     D I    L L  V        DE   
Sbjct: 123 AVYGGADIGRQIRGLK----DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLN 178

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  + ++  ++Q       LL +AT  P      ++ +I + K  ++P   K IK   +
Sbjct: 179 MGFLEDIEKIISQVPEQRQTLLFSATMPP------AIKNIGV-KFMKQPEHVK-IKAKEM 230

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--- 520
             + ID+       V S+  + + I  ++ + +      V  R     +     +     
Sbjct: 231 TADLIDQY-----YVRSKDFEKFDIMTRLLDVQTPELTIVFGRTKRRVDELARGLEARGY 285

Query: 521 ----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG +S   + SV+ SFKNG   +L+AT V   G+D+   + +   +      + +
Sbjct: 286 KAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYV 345

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           H++ GR GR  +    +    P    N    L V++N
Sbjct: 346 HRI-GRTGRAGKGGMSVTFVTP----NEMGYLHVIEN 377


>gi|212275354|ref|NP_001130628.1| hypothetical protein LOC100191727 [Zea mays]
 gi|194689682|gb|ACF78925.1| unknown [Zea mays]
          Length = 614

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 168/412 (40%), Gaps = 94/412 (22%)

Query: 253 IPINVEGK-------------IAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRML 295
           +P++V GK             +A+ +LRN+      SPT  Q  A+  +   M+ ++ M 
Sbjct: 66  MPVDVSGKGAPGPADGFEAAGLAEAVLRNVARCGYESPTPVQRYAMPIV---MAGRDLMA 122

Query: 296 RILQGDVGSGKT-------LVALIAMAAA--------------VEAGGQAVIMAPIGILA 334
                  GSGKT       +  L+A A                V A  +A+++AP   LA
Sbjct: 123 ---CAQTGSGKTAAFCLPVVSGLVAPAGGGNGHGPRDRGSFDRVAAKPRALVLAPTRELA 179

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            Q  E  KK++  T + V +  G  P   + + LE+       +++ T     D ++  +
Sbjct: 180 AQINEEAKKFSFQTGLRVVVAYGGTPMFSQLRDLEK----GVDLLVATPGRLVDLVERSR 235

Query: 395 LIL-----VIVDEQHR-----FGVQQR-----LKLTQK---------ATAPHVLLMTATP 430
           + L     +++DE  R     F  Q R     + + +K         AT P  +   AT 
Sbjct: 236 ISLEAIKYLVMDEADRMLNMGFEPQIRKIVDMMNMPKKSVRQTMLFSATFPPEIQRLATD 295

Query: 431 IPRTLVLTSLGDIDIS------KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                +  ++G +  S      KI     G K  +  ++      +++++  V LS+ K+
Sbjct: 296 FLHNYIFVTVGRVGSSTDLIDQKIEFVNGGEK--RGFLL------DILQKQSVGLSKNKQ 347

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              +   +E K+E++      + N        S   IHG  +  ++E  + SFK+G   +
Sbjct: 348 PLTLV-FVETKREADSLQYCLQSNGF------SATSIHGDRTQQERERALKSFKSGATPI 400

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           L+AT V   G+DV + + +I  +        +H++ GR GR  +      L+
Sbjct: 401 LVATDVASRGLDVPNVAHVINYDLPKSIDDYVHRI-GRTGRAGKAGKATALF 451


>gi|170593931|ref|XP_001901717.1| DEAD/DEAH box helicase family protein [Brugia malayi]
 gi|158590661|gb|EDP29276.1| DEAD/DEAH box helicase family protein [Brugia malayi]
          Length = 534

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 136/320 (42%), Gaps = 48/320 (15%)

Query: 302 VGSGKTLVALIAM-------AAAVEAGGQ----AVIMAPIGILAQQHYEFIKKYTQNTQI 350
            GSGKT   LI +        +  E G       ++++P   LA+Q YE    ++     
Sbjct: 152 TGSGKTAAFLIPVINYISTQKSRTEYGWNTYPYCIVVSPTKELAEQLYEDTLAFSVGLNC 211

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
           +  +  G +P   R+ ++ RI  G   I I T     D +Q   L L  +   H     +
Sbjct: 212 VTVVSFGEIP---RKDSIARIKEG-CDIFICTVGRLCDYLQNKILDLRCL---HFLVFDE 264

Query: 411 RLKLTQKATAPHVLLMTATP----IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
             KL Q     H L+    P    IP  R ++ ++    D++++  +       K V+  
Sbjct: 265 ADKLLQMEGFYHDLIENLLPKCHEIPNLRKMLFSATDYNDLAELKGECLMPNATKVVVGT 324

Query: 465 INRIDEVIER--LKVVLSEGKKAYW-ICPQIEEKKESN-------------FRSVVERFN 508
           +N ++  IE+  LKV + E + A   +  +I  K++ N             F SV+  + 
Sbjct: 325 LNSVNPFIEQRVLKVEVHEKRDALLNLMQEIYLKRDDNSPPKIIIFVNTKRFASVIACYL 384

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII---I 565
           SL  +       IH  ++   +   +++ ++  C +L++T V   G+D+   S II   I
Sbjct: 385 SLKGY---KAYPIHANLTAKLRREAIEALQSSDCHILVSTDVAARGLDIKGISHIINYEI 441

Query: 566 ENAEHFGLAQLHQLRGRVGR 585
              E F L+ +H++ GR GR
Sbjct: 442 PRPESF-LSYVHRV-GRTGR 459


>gi|148973895|ref|ZP_01811428.1| RhlE [Vibrionales bacterium SWAT-3]
 gi|145965592|gb|EDK30840.1| RhlE [Vibrionales bacterium SWAT-3]
          Length = 401

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 156/361 (43%), Gaps = 46/361 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QAV 325
           PT  QE AI  +L   S KN    I     G+GKT   ++ +   +  G        +AV
Sbjct: 24  PTSIQEKAIPIVL---SGKNL---IAAAQTGTGKTASFVLPILEMLSKGETQRKKRIRAV 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  + IKKY +   +    + G +   H++   +R+  G   I++ T   
Sbjct: 78  ILTPTRELAVQVEQNIKKYAKFLNLTSLAMYGGVSYQHQK---DRLIEG-VDILVATPGR 133

Query: 386 F-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTAT---PIP 432
                 Q ++ + ++ ++++DE  R      ++   K  A        LL +AT   P+ 
Sbjct: 134 LIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARLPQDVQNLLFSATLSTPV- 192

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R L  +++ D +   I +  A +  I+  ++ +++ D     L  +++EG    W    I
Sbjct: 193 RALAKSAISDAEEISIAKTDASKANIEQWLVTVDK-DRKSALLSHMITEGN---WDQALI 248

Query: 493 E-EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
             E K    + V +    L +    + A   GR   I +E ++  FK G  K L+AT V 
Sbjct: 249 FIETKHGAAKLVAQ----LEKRGIQAEAFHSGRSQAI-REKILADFKKGHLKFLVATGVA 303

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ +   ++  +        +H++ GR GR +     I      LSK+++  L ++
Sbjct: 304 ARGIDIDNLPRVVNYDMPFPADDYVHRI-GRTGRADATGEAISF----LSKDNFKNLCII 358

Query: 612 K 612
           +
Sbjct: 359 E 359


>gi|68490782|ref|XP_710786.1| potential DEAD box RNA helicase [Candida albicans SC5314]
 gi|68490809|ref|XP_710773.1| potential DEAD box RNA helicase [Candida albicans SC5314]
 gi|46432016|gb|EAK91525.1| potential DEAD box RNA helicase [Candida albicans SC5314]
 gi|46432030|gb|EAK91538.1| potential DEAD box RNA helicase [Candida albicans SC5314]
          Length = 496

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 11/139 (7%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++ +IH   +   +E V+  FKNG   +LI T V+  G+D    +++I  +      A +
Sbjct: 322 NVDVIHAERTPKQREEVIKRFKNGDIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYV 381

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT--EDGFLIAEEDL--------K 626
           H++ GR GRG +    +  +     K     L+V+K +   DG+    ED+        K
Sbjct: 382 HRI-GRTGRGGKAGKAVTFFTKEDDKAIKPILNVMKQSGCNDGYSQWMEDMGKLSKKEKK 440

Query: 627 QRKEGEILGIKQSGMPKFL 645
           Q K  EI   K S +PK +
Sbjct: 441 QIKTHEIQRKKISTVPKVI 459


>gi|317970363|ref|ZP_07971753.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0205]
          Length = 598

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 135/320 (42%), Gaps = 37/320 (11%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKY-TQNTQIIVEI 354
           Q   G+GKT    + M AA++      Q +++ P   LA Q  +  K Y T+   + V  
Sbjct: 74  QAQTGTGKTAAFALPMLAALDETQRTPQVLVLTPTRELAIQVADSFKSYATKLPHLRVLP 133

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRF 406
           + G    +  R  + ++  G   +++GT     D ++           L+L   DE  R 
Sbjct: 134 VYGG---SDFRDQIHKLKRG-VQVVVGTPGRVMDHMRQGTLDVSGLRSLVLDEADEMLRM 189

Query: 407 GVQQRLK--LTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
           G    ++  L+Q      V+L +AT +P  +       L S  +I I     K +    I
Sbjct: 190 GFIDDVEWVLSQLPEKRQVVLFSAT-MPSEIRRISHQYLNSPAEITIKT---KGSDSSRI 245

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +   I +N   ++    +V+ +E K+   I         +  +++        E     +
Sbjct: 246 QQRFITVNGPMKLEALSRVLEAETKEGVIIF--------ARTKAITVTVAEALEAKGYGV 297

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+++G ++   +E  ++  KNGT  +L+AT V   G+DV   S++I  +      A +H+
Sbjct: 298 AVLNGDVAQSQRERTIERLKNGTVDVLVATDVAARGLDVDRISLVINYDIPFDSEAYVHR 357

Query: 579 LRGRVGRGEEISSCILLYHP 598
           + GR GR     + IL   P
Sbjct: 358 I-GRTGRAGRTGNAILFVTP 376


>gi|296329829|ref|ZP_06872313.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305676555|ref|YP_003868227.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152868|gb|EFG93733.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305414799|gb|ADM39918.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 479

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 145/356 (40%), Gaps = 58/356 (16%)

Query: 260 KIAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALI 312
           +I+  ILR +       PTK Q+S I   L+      R   +++   GSGKT    + L 
Sbjct: 8   QISHDILRALEGLGYTEPTKVQQSVIPAALE------RKDLVVKSQTGSGKTASFGIPLC 61

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            +A   E   QA+I+ P   LA Q  E I    +  +I    + G      ++  L++  
Sbjct: 62  ELADWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATSVFGKSSFDKQKAELKQ-- 119

Query: 373 HGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             ++H+++GT     D I+   L L     +++DE         +   ++  A    ++ 
Sbjct: 120 --KSHMVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEM---LNMGFIEQVEA----IIK 170

Query: 428 ATPIPRTLVLTSLG-DIDISKITE-----------KPAG--RKPIKTVIIPINRIDEVIE 473
             P  RT +L S     DI K++            K AG   K I+  +I +   ++   
Sbjct: 171 HLPTERTTMLFSATLPEDIEKLSRQYMQNPQHIEIKAAGLTTKNIEHAVIQVREENKFSL 230

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDK 530
              V+++E   +  I           F    E  N L +           IHG M   D+
Sbjct: 231 LKDVLMTENPDSSII-----------FCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDR 279

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             VM+ FK G  + L+AT V   GID+ + S++I  +      + +H+  GR GR 
Sbjct: 280 FDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRT-GRTGRA 334


>gi|302408591|ref|XP_003002130.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102]
 gi|261359051|gb|EEY21479.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102]
          Length = 401

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 136/341 (39%), Gaps = 57/341 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q  AI  + +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 49  SPSAVQSRAIVQVCKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRESQALVLS 102

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + + ++ +GQ HI+ GT     D
Sbjct: 103 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVG---EDIRKLDYGQ-HIVSGTPGRVAD 158

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT     L +T
Sbjct: 159 MIRRRDLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMT 218

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +       K    P        V I + R +  +E LK      +K  W    + +  ++
Sbjct: 219 T-------KFMTDP--------VRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDT 263

Query: 499 ----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T
Sbjct: 264 LTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLIST 323

Query: 549 TVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 324 DVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 359


>gi|37522077|ref|NP_925454.1| hypothetical protein gll2508 [Gloeobacter violaceus PCC 7421]
 gi|35213076|dbj|BAC90449.1| gll2508 [Gloeobacter violaceus PCC 7421]
          Length = 437

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 132/318 (41%), Gaps = 30/318 (9%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + Q   G+GKT    + L+  +   +A  QA+++AP   LA Q  E I  Y++++ + V 
Sbjct: 44  LAQAQTGTGKTAAFGLPLVDRSDPQDARVQALVLAPTRELAVQVCEAIHTYSKHSGVRVL 103

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGV 408
            I G  P     + + R+  G A I++GT     D     S+    L  +++DE  +   
Sbjct: 104 PIYGGQPID---RQMRRLRAG-AQIVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLD 159

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG-DIDISKITEKPAGRKPIKTVIIPINR 467
              ++  Q        ++ A P  R LV  S      I K+  +   R P+ T+ +P   
Sbjct: 160 MGFIEEVQT-------ILDAAPPERQLVFFSATLPASIRKLAARHL-RTPM-TLTMPAEE 210

Query: 468 ID--EVIERLKVVLSEGKKAYWICPQIEEKKESN--FRSVVERFNSLHEHFTSS---IAI 520
            D   + +R+  V  + +          E   S   F    +  + L E           
Sbjct: 211 RDTPAIAQRVYFVNFKNRAQALTRVLAAEDPASALIFTRTKQAADELAEQLQDDGHRAEA 270

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG ++   +E+V+  F+     +++AT V   G+D+ D S +I  +    G + +H++ 
Sbjct: 271 LHGDLNQSAREAVLGRFRRQQLNVVVATDVAARGLDIADLSHVINYDMPQDGESYIHRI- 329

Query: 581 GRVGRGEEISSCILLYHP 598
           GR GR       I    P
Sbjct: 330 GRTGRAGRTGVAISFALP 347


>gi|33593906|ref|NP_881550.1| ATP-dependent RNA helicase DbpA [Bordetella pertussis Tohama I]
 gi|33563980|emb|CAE43244.1| probable ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|332383325|gb|AEE68172.1| ATP-dependent RNA helicase DbpA [Bordetella pertussis CS]
          Length = 462

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 139/320 (43%), Gaps = 34/320 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + +++  +   N ++
Sbjct: 45  IAQAKTGSGKTAAFGLGVLQNLDVNRLAPQALVLCPTRELADQVAQELRRLARLIPNVKV 104

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR 405
           +   + G    A  R   E +A G  H+++GT    QD     S+    L  +++DE  R
Sbjct: 105 LT--LCGG---AAARPQAESLARG-THLVVGTPGRIQDHLARGSLDLSTLNTLVLDEADR 158

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
             V         A A H       P  R TL+ ++    +I K++ +   R P + + + 
Sbjct: 159 M-VDMGFYDDIAAIASHC------PARRQTLLFSATYPDNIRKLSARFL-RNPAE-IKVE 209

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SI 518
                  IE+L   + EG++   +   +   + ++   F +   R + L E   +   S 
Sbjct: 210 AQHDASRIEQLFFEIDEGQRLDAVATLLAHFRPASTLAFCNTKIRSHDLVERLRAQGISA 269

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             ++G +   +++ ++  F N +C +L+AT V   G+D+ +   +I  +        +H+
Sbjct: 270 QALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVINVDVTKDTEVHVHR 329

Query: 579 LRGRVGRGEEISSCILLYHP 598
           + GR GRG++    + L  P
Sbjct: 330 I-GRSGRGDQKGLALSLCSP 348


>gi|15604513|ref|NP_221031.1| putative ATP-dependent RNA helicase RHLE (rhlE) [Rickettsia
           prowazekii str. Madrid E]
 gi|3861207|emb|CAA15107.1| PUTATIVE ATP-DEPENDENT RNA HELICASE RHLE (rhlE) [Rickettsia
           prowazekii]
 gi|292572297|gb|ADE30212.1| ATP-dependent RNA helicase RhlE [Rickettsia prowazekii Rp22]
          Length = 407

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 137/313 (43%), Gaps = 33/313 (10%)

Query: 302 VGSGKTLVALIAMAAA-VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGKTL  L+ +  A ++    A+I+ P   LA Q +  + K T   ++   ++ G  P
Sbjct: 45  TGSGKTLAYLLPLIDAFIKNKTTALILVPTRELATQIHSTLNKVTTAYKMNSAVLIGGEP 104

Query: 361 QAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRL 412
              +   L++       +IIGT       L + S++   + ++++DE  R    G++++L
Sbjct: 105 MFKQFMQLKK----NPKVIIGTPGRIIEHLNRRSLKIEHIGIIVLDEMDRMLDMGMKEQL 160

Query: 413 KLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +   K       VL+ +AT +P+ ++  S   ++            P++ ++   N+   
Sbjct: 161 EEINKFLPEKRQVLMFSAT-MPKHIIAVSQKYLN-----------NPVRIMVGATNKAAA 208

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRM 525
            I++  + +S  +K   +  Q+  +  S       +   ++   + ++       IHG +
Sbjct: 209 EIKQELMHVSNKEKFSELTKQLGNRVGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDL 268

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S   +E V+ SF+    ++++AT V   G+D+     +I  +        LH++ GR GR
Sbjct: 269 SQSQRERVILSFRKLNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRI-GRTGR 327

Query: 586 GEEISSCILLYHP 598
              I   +    P
Sbjct: 328 AGAIGHALSFISP 340


>gi|330004453|ref|ZP_08304947.1| primosomal protein [Klebsiella sp. MS 92-3]
 gi|328536611|gb|EGF62938.1| primosomal protein [Klebsiella sp. MS 92-3]
          Length = 755

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ Q     VE++
Sbjct: 244 LLAGITGSGKTEVYLSVLENVLAQGRQALVMVPEIGLTPQT----IARFRQRFNAPVEVL 299

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 300 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKDLGVIVIDEEHDSSYKQQ 353


>gi|299066188|emb|CBJ37372.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           CMR15]
          Length = 481

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 125/295 (42%), Gaps = 35/295 (11%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHI 378
           +A+I+ P   LA Q Y+ + KY ++T +   ++ G +   PQ  + R+ +E +      +
Sbjct: 79  RALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQTEQLRRGVEVLVATPGRL 138

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVL 437
           +     + Q S+   ++ ++++DE  R      L   Q+       ++   P  R TL+ 
Sbjct: 139 L---DHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQR-------IINLLPAHRQTLLF 188

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I K+      R P    +   N   + + ++   + +G K   +   + ++ E
Sbjct: 189 SATFSPEIKKLAASYL-RHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQRAE 247

Query: 498 ----------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                     SN +    R     E    +   IHG  +  ++   +++FK GT  +L+A
Sbjct: 248 QGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQGTVDVLVA 307

Query: 548 TTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           T V   G+D+     +I      NAE +    +H++ GR GR       + L+ P
Sbjct: 308 TDVAARGLDISQMPCVINFDLPFNAEDY----VHRI-GRTGRAGASGDALSLFAP 357


>gi|257815096|gb|ACV69940.1| vasa [Osphronemus goramy]
          Length = 653

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/339 (20%), Positives = 139/339 (41%), Gaps = 68/339 (20%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+ +   + A G            +A+I+AP   L  Q Y   +K++  T 
Sbjct: 264 TGSGKTAAFLLPILQQLMADGVAASRFSELQEPEALIVAPTRELINQIYLEARKFSFGTC 323

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   ++ G +  AH+ + + R      +++ GT     D I   K+ L     +++DE  
Sbjct: 324 VRPVVVYGGVSTAHQIREISR----GCNVLCGTPGRLLDVIGRGKVGLSKLRYLVLDEAD 379

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK------- 451
           R        +      P +  +  +P +P     +TL+ ++    DI ++          
Sbjct: 380 R--------MLDMGFEPDMRRLVGSPGMPSKENRQTLMFSATYPEDIQRMAADFLKTDYL 431

Query: 452 -------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
                        ++   + + +  +  + L ++ + G +   +   +E K++++F   +
Sbjct: 432 FLAVGVVGGACSDVEQTFVQVTKFSKREQLLDLLKTTGTERTMVF--VETKRQADF---I 486

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             F    +  T+SI   HG     ++E  +  F++G C +L+AT+V   G+D+ D   ++
Sbjct: 487 ATFLCQEKVPTTSI---HGDREQREREQALADFRSGKCPVLVATSVAARGLDIPDVQHVV 543

Query: 565 IENAEHFGLAQ-----LHQLRGRVGRGEEISSCILLYHP 598
                +F L       +H++ GR GR       +  Y P
Sbjct: 544 -----NFDLPSNIDEYVHRI-GRTGRCGNTGRAVSFYDP 576


>gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 515

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/354 (19%), Positives = 145/354 (40%), Gaps = 60/354 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGG-QA 324
           +P+  Q  AI  +LQ    K+ M        G+GKT      ++ L++     +AG  +A
Sbjct: 23  TPSPIQAQAIPAVLQG---KDVMA---AAQTGTGKTAGFTLPMLELLSKGNRAQAGQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +N  +   +I G +P   +   + ++ HG   +++ T  
Sbjct: 77  LVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQ---IAKLRHG-VDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 133 RLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRK-------ILAILPKQRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
               D  +   K     P++  + P N     +++            W+CP  + +K   
Sbjct: 186 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQ------------WVCPVDKSQKSAL 233

Query: 497 ------ESNFRSVV---------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 +++++ V+          R     E      A IHG  S   +   +  FKNG 
Sbjct: 234 LIQLIKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQ 293

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            ++L+AT +   G+D+     ++  +  +     +H++ GR GR       + L
Sbjct: 294 ARVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGQAVSL 346


>gi|25083096|gb|AAN72041.1| putative RNA helicase [Arabidopsis thaliana]
          Length = 559

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG     D+ES +  FKN  C LLIAT+V   G+DV +  +++  +A +     +H++ 
Sbjct: 199 LHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRV- 257

Query: 581 GRVGRGEEISSCILL-------YHPPLSKN-SYTRLSV---LKNTEDGFLI 620
           GR GR       +         Y P L K+   +   V   LK   DGF++
Sbjct: 258 GRTGRAGRKGCAVTFISEDDAKYAPDLVKDLELSEQPVPDDLKALADGFMV 308


>gi|58331980|ref|NP_001011139.1| eukaryotic translation initiation factor 4A1 [Xenopus (Silurana)
           tropicalis]
 gi|54261694|gb|AAH84468.1| eukaryotic translation initiation factor 4A, isoform 1 [Xenopus
           (Silurana) tropicalis]
 gi|89267437|emb|CAJ82477.1| eukaryotic translation initiation factor 4A, isoform 1 [Xenopus
           (Silurana) tropicalis]
          Length = 406

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 128/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDMKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQSEAPHIVVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK ++   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLSSNAQVVLLSAT-MP----------ADVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|291279950|ref|YP_003496785.1| DEAD/DEAH box helicase domain protein [Deferribacter desulfuricans
           SSM1]
 gi|290754652|dbj|BAI81029.1| DEAD/DEAH box helicase domain protein [Deferribacter desulfuricans
           SSM1]
          Length = 927

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 172/394 (43%), Gaps = 67/394 (17%)

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN------------------RM 294
           IP   +GKI Q I+        K++  +I DI+Q+ + K+                  R+
Sbjct: 6   IPYLKKGKIGQYIVFEREIGENKAKYKSI-DIIQNQTIKDALNKNGIENLYLHQAKAYRL 64

Query: 295 LR-----ILQGDVGSGKTLV-ALIAMAAAVEAGGQAVIMAPIGILAQQHYEF---IKKYT 345
           L+     ++     SGKTL   L  +   +E   +A+ + P+  L     E    I K+ 
Sbjct: 65  LKNGENILITTPTASGKTLCYNLPILEDILENRAKALYLFPMKALGYDQKEKLLEIAKFI 124

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLI---- 396
            + ++ V+I+ G+  +  RR    RI   +  III       + L     ++Y  I    
Sbjct: 125 PDFKLNVQILDGDTSKVKRR----RILSSEPDIIITNIDIVHYYLLPKMDEWYNFISNLK 180

Query: 397 LVIVDEQHR----FGVQQRLKLTQ-KATAPHV-LLMTATPIPRTLVLTS-LGDIDISKIT 449
            +++DE H     FG   +    + K   P V ++ ++  +   L  T+ L +I+ + IT
Sbjct: 181 YIVIDELHVYRGVFGAHFKNIFDRLKRFIPDVQVIASSATVGNPLEFTNDLLNINFNHIT 240

Query: 450 EK--PAGRKP---IKTVIIPINRIDEVIERLKVVLSEGKKAYWIC-PQIEEKKESNFRSV 503
           E   P  +K    I    IP   I   +  +K ++  G K   +C  +   + ES ++S+
Sbjct: 241 ESGAPTAKKYFLLINPEDIPPANIATYL--IKTLIESGIKT--LCFTKSRMQTESIYKSL 296

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV--VDAS 561
           +   N   +  +S  A   G + + ++  +  +F++G  K +I+T+  E+GID+  +DA+
Sbjct: 297 INNKNIKKDSVSSYRA---GFLPE-ERREIEKNFRDGNLKAVISTSAFELGIDIGGIDAT 352

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           I++        L  L Q  GR GR    S  IL+
Sbjct: 353 ILV---GYPGSLMSLWQRAGRSGRHGNDSLIILI 383


>gi|254779621|ref|YP_003057727.1| primosome assembly protein PriA [Helicobacter pylori B38]
 gi|254001533|emb|CAX29551.1| Primosomal protein N'(ATP-dependent helicase priA) (Replication
           factor Y) [Helicobacter pylori B38]
          Length = 619

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + A+A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHSA-SLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      + + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKRVFKEN----LGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 219 LKELGLIIVDEEHDFS 234


>gi|238760311|ref|ZP_04621453.1| Primosomal protein N' [Yersinia aldovae ATCC 35236]
 gi|238701439|gb|EEP94014.1| Primosomal protein N' [Yersinia aldovae ATCC 35236]
          Length = 732

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 11/137 (8%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I  +  Q +  L  L G  GSGKT V L  +   +  G QA+++ P IG+  Q
Sbjct: 203 QATAVGAIRSEDCQFSAWL--LAGVTGSGKTEVYLSVLENILAQGRQALVLVPEIGLTPQ 260

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
                I ++ +     VE++   +  + R     R  +G+A I+IGT  ALF     + +
Sbjct: 261 T----IARFRERFNAPVEVLHSGLNDSERLSVWLRARNGEAAIVIGTRSALF---TPFSR 313

Query: 395 LILVIVDEQHRFGVQQR 411
           L ++I+DE+H    +Q+
Sbjct: 314 LGVIIIDEEHDSSYKQQ 330


>gi|289803389|ref|ZP_06534018.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 151

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 8/132 (6%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEV-LNCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHY 143
            K    M+HP Y
Sbjct: 122 GKYGAEMIHPEY 133


>gi|170747431|ref|YP_001753691.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653953|gb|ACB23008.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 527

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 146/363 (40%), Gaps = 44/363 (12%)

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +++K+L  +  +    PT  Q  AI  +L     +  +L I Q   G+GKT    + M  
Sbjct: 8   LSEKVLNAVEAAGYTEPTPIQAEAIPHVLA----RRDVLGIAQ--TGTGKTAAFTLPMLT 61

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q  E   +Y  N ++ V +I G +  A +   L R
Sbjct: 62  LLENGRARARMPRTLILEPTRELAAQVVENFDRYGTNHKLNVALIIGGVSFADQDAKLMR 121

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLL 425
                  ++I T     D  +  KL+L     +++DE  R      L +        ++ 
Sbjct: 122 ----GTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRM-----LDMGFIPDIERIVK 172

Query: 426 MTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-- 482
           M   P  R TL  ++    +I ++ +          V  P +    + +RL    +EG  
Sbjct: 173 MV--PFTRQTLFFSATMPPEIERLADMFLHNPQRVEVARPASTATTITQRLVATGAEGHA 230

Query: 483 --KKAYWICPQIEEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             ++   +    E+ K      +  R V     SL  H   + A+ HG M    + + +D
Sbjct: 231 KRERLRGLIRGEEDLKNGIIFCNRKRDVALLQKSLVSHGFDAAAL-HGDMDQRARTTALD 289

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F+NG   LL+A+ V   G+D+   S +   +  H     +H++ GR GR     +   L
Sbjct: 290 GFRNGETALLVASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRI-GRTGRAGRSGTAYTL 348

Query: 596 YHP 598
             P
Sbjct: 349 VAP 351


>gi|50123178|ref|YP_052345.1| primosome assembly protein PriA [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613704|emb|CAG77155.1| primosomal protein N' [Pectobacterium atrosepticum SCRI1043]
          Length = 732

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ +   + V+++
Sbjct: 221 LLAGITGSGKTEVYLSVLENVLAQGKQALVLVPEIGLTPQT----IARFRERFNVPVDVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   G+A I+IGT  ALF     + +L L+++DE+H    +Q+
Sbjct: 277 HSALNDSERLAVWLRARSGEAAIVIGTRSALF---TPFARLGLIVIDEEHDSSYKQQ 330


>gi|322796814|gb|EFZ19232.1| hypothetical protein SINV_01003 [Solenopsis invicta]
          Length = 1201

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 140/334 (41%), Gaps = 49/334 (14%)

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
            M+ I Q   GSGKTL  ++     +          G  A+I+AP   LAQQ  +    + 
Sbjct: 745  MVGIAQ--TGSGKTLAYILPAIVHINHQPRLSRNDGPIALILAPTRELAQQIQQVASDFG 802

Query: 346  QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIV 400
             ++Q+    I G  P+  + + LER       I I T       L + +    +   +++
Sbjct: 803  MSSQVRNTCIFGGAPKGPQARDLER----GVEICIATPGRLIDFLERGTTNLRRCTYLVL 858

Query: 401  DEQHR---FGVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITE 450
            DE  R    G + ++ K+ ++       LM +   P+ +       LT    I+I  + +
Sbjct: 859  DEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRNLAEEFLTDYIQINIGSL-Q 917

Query: 451  KPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              A    ++ V +     +  ++++ L+ + +E +    I  + + K +   R++     
Sbjct: 918  LAANHNILQIVDVCEEYEKESKLMKLLEEISNEPENKTIIFVETKRKVDDITRAI----- 972

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII--- 565
                 +      IHG  S  +++ V++ F+N    +L+AT V   G+DV D   +I    
Sbjct: 973  ---NRYGWQAIGIHGDKSQQERDYVLNQFRNSRSAILVATDVAARGLDVEDVKFVINLDY 1029

Query: 566  -ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              N+E +    +H++ GR GR +   +    + P
Sbjct: 1030 PSNSEDY----VHRI-GRTGRSQRTGTAYAFFTP 1058



 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 137/342 (40%), Gaps = 51/342 (14%)

Query: 302 VGSGKTL-------VALIAMAAAVEAGGQAV-IMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL       V +I         G  V I+AP   LAQQ  E    + +   +   
Sbjct: 158 TGSGKTLGYILPAIVHIIHQPRISSGDGPIVLILAPTRELAQQIQEVANSFGEMAAVRNT 217

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR--- 405
            I G  P+  +   LE+       I I T       L + +   Y+   +++DE  R   
Sbjct: 218 CIFGGAPKGPQAHDLEK----GIEICIATPGRLIDFLEKGTTNLYRCTYLVLDEADRMLD 273

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKP 457
             F  Q R  + Q      VL+ +AT  P+ +       LT    ++I  +T        
Sbjct: 274 MGFEPQIRKIIEQIRPDRQVLMWSAT-WPKEVRALAEDFLTDYIHLNIGSLT-------- 324

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-------RSVVERFNSL 510
             +    I +I +V +  +  L    K Y +  +I  +KE+         R V +   ++
Sbjct: 325 -LSANHNITQIIDVCQEYEKDL----KLYRLLQEIGTEKENKTIIFVETKRKVDDITKNI 379

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 +++I HG  +  +++ V+  F+NG   +L+AT V   G+DV D   +I  +   
Sbjct: 380 RREGWQAVSI-HGDKNQQERDHVLQEFRNGKAPILVATDVAARGLDVDDVKYVINFDFPS 438

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
                +H++ GR GR  +  +    +     K++   + VL+
Sbjct: 439 SSEDYIHRI-GRTGRKRQTGTAYAFFTTHNMKHAGDLIEVLR 479


>gi|238921647|ref|YP_002935162.1| primosome assembly protein PriA [Edwardsiella ictaluri 93-146]
 gi|238871216|gb|ACR70927.1| primosomal protein N', putative [Edwardsiella ictaluri 93-146]
          Length = 731

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ Q   + V+++
Sbjct: 220 LLAGVTGSGKTEVYLSIIENLLVRGRQALVLVPEIGLTPQT----IARFRQRFSVPVDVL 275

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              +    R  A  R   G++ I+IGT  ALF     + +L  +I+DE+H    +Q+   
Sbjct: 276 HSGLNDGERLAAWLRARDGESAIVIGTRSALF---TPFARLGGIIIDEEHDGSYKQQEGW 332

Query: 415 TQKATAPHVLLMTATPIP-----RTLVLTSLGDIDISK-----ITEKPAGRKP 457
              A    VL      IP      T  L +L ++D+ K     +T++    KP
Sbjct: 333 RYHARDLAVLRARLEDIPIILGSATPALETLHNVDVGKYRRLCLTQRAGNAKP 385


>gi|193290168|ref|NP_001123270.1| pitchoune [Nasonia vitripennis]
          Length = 643

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 135/337 (40%), Gaps = 68/337 (20%)

Query: 302 VGSGKTLVALIAMAAAV-------EAGGQAVIMAPIGILAQQHYEFIK---KYTQNTQII 351
            GSGKTL  LI     +         G   +I++P   L+ Q +  +K   KY  +T  +
Sbjct: 187 TGSGKTLSFLIPAVELIYKLKFMPRNGTGCIIISPTRELSMQTFGVLKELMKYHYHTYGL 246

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHR 405
           +      M  A R+   ++++ G  +I++ T     D +Q      Y  L  +I+DE  R
Sbjct: 247 L------MGGASRQTEAQKLSKG-VNIVVATPGRLLDHLQNTPDFLYKNLQCLIIDEADR 299

Query: 406 F---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
               G ++ LK  +         +L +AT   +T  LT+L       + ++P        
Sbjct: 300 ILDIGFEEELKQIINILPKRRQTMLFSATQTKKTEALTTLA------VKKEP-------- 345

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---------KESNFRSVVERFNSL- 510
           V + ++      E+ K  +   ++ Y  CP   EK         K++  + V+  F+S  
Sbjct: 346 VYVGVDD-----EKEKATVEGLEQGYVACPS--EKRFLLLFTFLKKNRQKKVMVFFSSCM 398

Query: 511 ----HEHFTSSIAI----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
               H    + I +    IHG+     + +    F N    +L+ T V   G+D+ D   
Sbjct: 399 SVKYHHELLNYIDLPVMSIHGKQKQTKRTTTFFQFCNAQSGILLCTDVAARGLDIPDVDW 458

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           I+  +        +H++ GR  RGE  S   LL   P
Sbjct: 459 IVQYDPPDDPKEYIHRV-GRTARGEGSSGHALLILRP 494


>gi|87200597|ref|YP_497854.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136278|gb|ABD27020.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 590

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 135/327 (41%), Gaps = 48/327 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +              A+++AP   LA Q    +      
Sbjct: 54  VVSAQTGSGKTVAFGLAMAGELLGDEATLPFATAPLALVVAPTRELALQVSRELTWLYAP 113

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
           TQ  +    G M  +  R+AL   +HG AHI++GT    +D ++   L L     V++DE
Sbjct: 114 TQARIATCVGGMDPSRERRAL---SHG-AHIVVGTPGRLRDHLERGALDLSALRCVVLDE 169

Query: 403 QHRF---GVQQRLKLTQKAT--APHVLLMTAT---PIPRTLVLTSLGDIDISKITE-KPA 453
                  G ++ L+    AT      LL +AT   PI           + IS + E +  
Sbjct: 170 ADEMLDMGFREDLEELLDATPEGRRTLLFSATMPKPIEALARRYQRDALRISTVGEARGH 229

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN-SLHE 512
           G    + V +    I+  +  L +   E + A   C           R  V R + +L E
Sbjct: 230 GDIAYRAVAVAPAEIEAAVVNL-LRFHEAETAMLFC---------ATRDNVRRLHATLVE 279

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENA 568
              +++A+  G  S  ++ + + + ++   ++ +AT V   GID+   S++    I  +A
Sbjct: 280 RGFTAVAL-SGEHSQSERNNALQALRDRRARVCVATDVAARGIDLPSLSLVVHVEIPRDA 338

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILL 595
           E      L    GR GR  +  + +L+
Sbjct: 339 E-----TLQHRSGRTGRAGKKGTAVLI 360


>gi|89896500|ref|YP_519987.1| hypothetical protein DSY3754 [Desulfitobacterium hafniense Y51]
 gi|89335948|dbj|BAE85543.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 478

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 136/322 (42%), Gaps = 50/322 (15%)

Query: 302 VGSGKT------LVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            G+GKT      ++  +AM   +  G +   A+++AP   LA Q  E    Y  N  +  
Sbjct: 100 TGTGKTAAFAIPILQSLAMGQGLLKGKRQIRALVLAPTRELATQIAESFTAYGVNLPLRT 159

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            +I G + QA + + LE+       I++ T     D I    + L  V+        Q L
Sbjct: 160 LVIFGGVGQAPQTRKLEK----GIDILVATPGRLLDLINQGFIDLSHVEHFVLDETDQML 215

Query: 413 KLTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
            +       H +    T +PR    ++ ++   ++I K+ +    + P+K  + P     
Sbjct: 216 DMGML----HDVKRIITYLPRERQNMLFSATMPVEIEKLADTIL-KGPVKIAMTPEFSPL 270

Query: 470 EVIERLKVVLSEGKKA----YWICPQIEEKKESNFRSVVERFNSLH-----------EHF 514
           ++IE+    + +  KA    YW+       K + + SV+    + H           + F
Sbjct: 271 DIIEQEVYFVDKANKAALLTYWL-------KNNEYDSVLVFSRTKHGADKIVKELNKKGF 323

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           T+    IHG  S  ++E  + +FK    ++L+AT +   G+D+ + S +I  N       
Sbjct: 324 TA--VAIHGNKSQANREQALHAFKKRKTRILVATDIAARGLDIQELSHVINYNLPEVPET 381

Query: 575 QLHQLRGRVGR----GEEISSC 592
            +H++ GR GR    G+ I+ C
Sbjct: 382 YIHRI-GRTGRAGLGGKAITFC 402


>gi|89897903|ref|YP_515013.1| SWF/SNF family helicase [Chlamydophila felis Fe/C-56]
 gi|89331275|dbj|BAE80868.1| swi/snf family helicase 2 [Chlamydophila felis Fe/C-56]
          Length = 1165

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 19/157 (12%)

Query: 297 ILQGDVGSGKTLVALIAMA-AAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL A+IA+  + +E G G ++I+ P  ++     EF K   +   +IV+ 
Sbjct: 723 ILADDMGLGKTLQAIIAITQSKLEKGKGCSLIVCPTSLVYNWKEEFRKFNPEFKTMIVDG 782

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL---VIVDEQHRFGVQQR 411
           +      ++RR+ L  ++     + I ++ L Q  I  YK  +   V++DE H   ++ R
Sbjct: 783 VP-----SYRRRQLADLS--DYDVAITSYNLLQKDIDIYKDFVFDYVVLDEAHH--IKNR 833

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL-VLTSLGDI 443
                K+     + H L++T TPI  +L  L SL D 
Sbjct: 834 TTRNAKSVKMIRSGHRLILTGTPIENSLEELWSLFDF 870


>gi|148549843|ref|YP_001269945.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148513901|gb|ABQ80761.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 443

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 128/285 (44%), Gaps = 31/285 (10%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHI 378
           +A+++ P   LA+Q +  +++Y +N  +    + G +   PQ  R R+ ++ +      +
Sbjct: 76  RALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMRLRRGVDLLVATPGRL 135

Query: 379 IIGTHALF-QDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP---HVLLMTATPI 431
           +     LF Q+++++ ++  +++DE  R    G  + L+ +  A  P     LL +AT  
Sbjct: 136 L----DLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQ-SVYAALPRKRQTLLFSATFS 190

Query: 432 PRTLVLTSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            +  +L  L   D   I   P  A    +K  ++P+++      +  +     +K  W  
Sbjct: 191 DQIRMLAGLALNDPLSIEVSPRNATATSVKQWLVPVDKK----RKADLFCHLLRKQRWKQ 246

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +  K  +    +VER   L E   +    IHG      ++  +DSFK    ++L+AT 
Sbjct: 247 VLVFAKTRNGVDQLVERL--LAEGVNADG--IHGDRPQATRQRALDSFKAREVQVLVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
           V   G+D+ D  +++  +        +H++ GR GR    GE IS
Sbjct: 303 VAARGLDIDDLPLVVNLDLPIVAEDYVHRI-GRTGRAGNKGEAIS 346


>gi|323499260|ref|ZP_08104237.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
 gi|323315648|gb|EGA68682.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
          Length = 646

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 141/335 (42%), Gaps = 25/335 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           SPT  Q ++I  +++ +        + +   G+GKT    + +   ++ G    QA+++A
Sbjct: 28  SPTPIQAASIPHLMEGVDA------LGKAQTGTGKTAAFSLPLLNKLDLGQRKPQAIVLA 81

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN + + V  I G      + +AL+   HG AHI++GT    Q
Sbjct: 82  PTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIVDQMRALK---HG-AHIVVGTPGRVQ 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL-LMTATPIPRTLVLTSLGDIDIS 446
           D I   +L L   DE H F + +  ++        V  +M   P     VL S     + 
Sbjct: 138 DLINRDRLHL---DEVHTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPML 194

Query: 447 KITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLS-EGKKAYWICPQIEEKKES----NF 500
           K   +   R+P+   +   N  +D+V ++  VV   E  +A     + EE   S      
Sbjct: 195 KNIVERFLREPVTIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVFVRT 254

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           R   ER            + +HG +    +E  +D  K G   +L+AT V+  G+DV   
Sbjct: 255 RQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRI 314

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           + +   +      + +H++ GR GR       ILL
Sbjct: 315 THVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILL 348


>gi|256419120|ref|YP_003119773.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256034028|gb|ACU57572.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 414

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 141/345 (40%), Gaps = 45/345 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQA 324
           PT  Q  AI  IL+     + +L I Q   G+GKT    I +   ++           + 
Sbjct: 24  PTDIQFKAIPSILK----GDDVLAIAQ--TGTGKTAAFAIPVLHKLQQYHPRKTKGEVRC 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           V+M P   LA Q  E  ++  + T++ +  + G + QA +   L+++A G   +I     
Sbjct: 78  VVMVPTRELAVQISEVFERLAKYTKLNILGLHGGVDQAPQ---LKKLAQGVDVLIATPGR 134

Query: 385 LF----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR---TLVL 437
           +F    Q  I   +  ++I+DE         L L        VL      +PR   TL  
Sbjct: 135 MFDLISQGFIDLSQTGILILDEADHM-----LDLGFIRDIRDVL----KHLPRRHQTLFF 185

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D DI  +        PI+  I P + + + ++     +    K +++   ++E  E
Sbjct: 186 SATIDEDIKDLAYSVVN-NPIRIQISPQDPVSKNVQHAVAYVGMDDKRFFLERLVKEFPE 244

Query: 498 SNFRSVV------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +     V      ER  +  E        +HG     ++  VMD FK G  KLLI T V 
Sbjct: 245 NKILVFVRTKVRAERVAAAMERVGIKSLTMHGGKEQDNRLQVMDEFKKGDIKLLITTDVN 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
             GID+ D   ++  +        +H++ GR GR    G+ +S C
Sbjct: 305 ARGIDIPDVEYVVNYDLPDVPENYVHRV-GRTGRGVKKGQAVSFC 348


>gi|229020923|ref|ZP_04177614.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273]
 gi|229026894|ref|ZP_04183218.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272]
 gi|228734397|gb|EEL85067.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272]
 gi|228740374|gb|EEL90681.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273]
          Length = 481

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 135/319 (42%), Gaps = 32/319 (10%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLACLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI-SKITEKPAG--RKPIKT 460
             F  Q    + +  T    +L +AT +P  +   S   +D  + I  K AG     I+ 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPEDVEKLSRKYMDSPTHIEIKAAGITTDKIEH 219

Query: 461 VIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            +    R +E +  LK V + E   +  I  + +E  +  F+ + +R N   +       
Sbjct: 220 TLFE-TREEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVFKQL-DRVNYPCDK------ 271

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      + +H+ 
Sbjct: 272 -IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRT 330

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       I    P
Sbjct: 331 -GRTGRAGNKGKAITFITP 348


>gi|220906008|ref|YP_002481319.1| primosome assembly protein PriA [Cyanothece sp. PCC 7425]
 gi|219862619|gb|ACL42958.1| primosomal protein N' [Cyanothece sp. PCC 7425]
          Length = 836

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 9/116 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L A+A  +EAG  A+++ P IG+  Q    F  ++       V + 
Sbjct: 311 LLHGVTGSGKTEVYLQAIAPLLEAGKSALVLVPEIGLTPQLTDRFRSRFGDR----VCVY 366

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              +    R     ++  G   +IIGT  A+F    Q   L L+I+DE+H  G +Q
Sbjct: 367 HSALSDGERYDTWRQLLEGMPQVIIGTRSAVFSPLPQ---LGLIILDEEHDSGFKQ 419


>gi|91205740|ref|YP_538095.1| primosome assembly protein PriA [Rickettsia bellii RML369-C]
 gi|123266194|sp|Q1RI08|PRIA_RICBR RecName: Full=Primosomal protein N'; AltName: Full=ATP-dependent
           helicase priA; AltName: Full=Replication factor Y
 gi|91069284|gb|ABE05006.1| Primosomal protein N' [Rickettsia bellii RML369-C]
          Length = 648

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 106/234 (45%), Gaps = 31/234 (13%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           PI V+    QKI  N    P  S+E   K  LQ ++  N+ + +++G  GSGKT V    
Sbjct: 105 PIKVK---EQKINNNFTL-PDLSEEQ--KQALQMLNDSNKPI-LIKGVTGSGKTEVYFYL 157

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +A  +  G QA++M P   L+ Q    I ++ +       I   ++ +A ++  L  I  
Sbjct: 158 IAEYLAKGKQALVMLPEIALSTQ---IINRFKERFGFDPIIWNSSVTKAQKKMILRGILE 214

Query: 374 GQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--TA--------PH 422
            +  I+IG   +LF   + +  L L+++DE+H    +Q   +   A  TA          
Sbjct: 215 DKVKIVIGARSSLF---LPFKNLGLIVIDEEHDDSYKQDDGVLYNARDTAIVRSTFDKAQ 271

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP-INRIDEVIERL 475
           ++L +ATP   T+   ++G   +  ++ +       K  ++P I  ID   E L
Sbjct: 272 IVLCSATPSIETMYNANIGKYSVINLSSR------YKNAVLPNIEMIDMTKEEL 319


>gi|28211493|ref|NP_782437.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28203934|gb|AAO36374.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 386

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 165/364 (45%), Gaps = 46/364 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   GSGKTL  L+ +   ++      QA+I+AP   LA Q  + I+  + N+++ V 
Sbjct: 44  IGQSPTGSGKTLAYLLPIFQKIDTSKREMQAIILAPTHELAMQINKEIQLLSGNSKVSVT 103

Query: 354 I--ITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF 406
              I GN   A+ ++ +E++   + H+I+G+       + +  I  + +  ++VDE  + 
Sbjct: 104 STPIIGN---ANVKRQIEKLKE-KPHVIVGSSGRILELIKKKKISAHTIKTIVVDEGDKL 159

Query: 407 -------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKP 457
                   ++  +K T +     +++ +AT   +TL +    + D +  K   + A    
Sbjct: 160 LDHSNLSSIKDVIKTTMRDR--QLMVFSATINEKTLNVAKGLMKDAEFIKAKSENAINPN 217

Query: 458 IKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           I  +    ++ D  EV+ +L   ++  K   +I     +  E+   +   +++ +     
Sbjct: 218 ITHMYFISDQRDKIEVLRKLVASINPEKAIVFI----NKSDETEIITAKLKYHKIKAEG- 272

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
                IHG  S  D++  ++ F++G  +LL+A+ +   G+D+ + S I   +        
Sbjct: 273 -----IHGSSSKKDRQKALEGFRSGKLQLLVASDIAARGLDIKNVSHIFNLDLPSDPKEY 327

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LH++ GR  R  E  + I +        +   LS++K  E  F I E + K   +G+IL 
Sbjct: 328 LHRV-GRTSRTGETGTAISIV-------TDKELSLIKKYERDFKI-EINSKTIYKGKILN 378

Query: 636 IKQS 639
            K+S
Sbjct: 379 SKKS 382


>gi|29375434|ref|NP_814588.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis V583]
 gi|227520091|ref|ZP_03950140.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX0104]
 gi|227554958|ref|ZP_03985005.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           HH22]
 gi|229546689|ref|ZP_04435414.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX1322]
 gi|229548784|ref|ZP_04437509.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           ATCC 29200]
 gi|293383725|ref|ZP_06629632.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|293388799|ref|ZP_06633292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|307267925|ref|ZP_07549313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|307271845|ref|ZP_07553113.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|307275145|ref|ZP_07556297.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|307286655|ref|ZP_07566741.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|307290778|ref|ZP_07570673.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|312901614|ref|ZP_07760885.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|312904406|ref|ZP_07763566.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|312907060|ref|ZP_07766056.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|312952884|ref|ZP_07771745.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|312978684|ref|ZP_07790411.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|29342894|gb|AAO80658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis V583]
 gi|227072435|gb|EEI10398.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX0104]
 gi|227175901|gb|EEI56873.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           HH22]
 gi|229306092|gb|EEN72088.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           ATCC 29200]
 gi|229308195|gb|EEN74182.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX1322]
 gi|291078801|gb|EFE16165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|291081956|gb|EFE18919.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|306498159|gb|EFM67681.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|306502133|gb|EFM71417.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|306508173|gb|EFM77291.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|306511351|gb|EFM80353.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|306515566|gb|EFM84093.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|310627045|gb|EFQ10328.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|310629187|gb|EFQ12470.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|310632233|gb|EFQ15516.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|311288391|gb|EFQ66947.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|311291302|gb|EFQ69858.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|315027034|gb|EFT38966.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
 gi|315029211|gb|EFT41143.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
 gi|315032370|gb|EFT44302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
 gi|315034370|gb|EFT46302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
 gi|315145185|gb|EFT89201.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
 gi|315148006|gb|EFT92022.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
 gi|315149607|gb|EFT93623.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
 gi|315153133|gb|EFT97149.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
 gi|315155152|gb|EFT99168.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
 gi|315158764|gb|EFU02781.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
 gi|315163093|gb|EFU07110.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
 gi|315165079|gb|EFU09096.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
 gi|315167890|gb|EFU11907.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
 gi|315171750|gb|EFU15767.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
 gi|315174909|gb|EFU18926.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
 gi|315574115|gb|EFU86306.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
 gi|315577243|gb|EFU89434.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
 gi|315581764|gb|EFU93955.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
 gi|327534429|gb|AEA93263.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
          Length = 536

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 139/337 (41%), Gaps = 42/337 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + M   ++A     Q +++AP   LA Q  E + +  ++ +I V+
Sbjct: 63  IGQAQTGTGKTAAFGLPMLNKIDADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQ 122

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHR 405
            + G      + + L+     + HI++GT     D I    L L  V        DE   
Sbjct: 123 AVYGGADIGRQIRGLK----DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLN 178

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  + ++  ++Q       LL +AT  P      ++ +I + K  ++P   K IK   +
Sbjct: 179 MGFLEDIEKIISQVPEQRQTLLFSATMPP------AIKNIGV-KFMKQPEHVK-IKAKEM 230

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--- 520
             + ID+       V S+  + + I  ++ + +      V  R     +     +     
Sbjct: 231 TADLIDQY-----YVRSKDFEKFDIMTRLLDVQTPELTIVFGRTKRRVDELARGLEARGY 285

Query: 521 ----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG +S   + SV+ SFKNG   +L+AT V   G+D+   + +   +      + +
Sbjct: 286 KAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYV 345

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           H++ GR GR  +    +    P    N    L V++N
Sbjct: 346 HRI-GRTGRAGKGGMSVTFVTP----NEMGYLHVIEN 377


>gi|1170511|sp|P41382|IF410_TOBAC RecName: Full=Eukaryotic initiation factor 4A-10; Short=eIF-4A-10;
           AltName: Full=ATP-dependent RNA helicase eIF4A-10
 gi|475213|emb|CAA55642.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
 gi|475216|emb|CAA55641.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
          Length = 413

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 121/312 (38%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++   L        +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLS 196

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V + +AT  P  L +T        K   KP        V I
Sbjct: 197 RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMNKP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R D  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 361

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 362 NYLHRI-GRSGR 372


>gi|307110891|gb|EFN59126.1| hypothetical protein CHLNCDRAFT_137938 [Chlorella variabilis]
          Length = 1343

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 8/138 (5%)

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           F S  +R ++L        A +HG     D+ES +  +K   C +L+AT+V   G+DV D
Sbjct: 730 FVSSQDRCDTLFRDLLR--AGLHGGKDQSDRESTIVDYKANVCNILVATSVAARGLDVKD 787

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT----- 614
             +++  +  +     +H++ GR GR     S I    P   + +   +  LK +     
Sbjct: 788 LVLVVNYDVPNHHEDYVHRV-GRTGRAGAKGSAITFIGPDEEQYAPDLVKALKESGAPIP 846

Query: 615 EDGFLIAEEDLKQRKEGE 632
           +D   +AE   K+R+EG+
Sbjct: 847 QDLAAMAEAFGKKRREGK 864


>gi|261222221|ref|ZP_05936502.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|265998185|ref|ZP_06110742.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
 gi|260920805|gb|EEX87458.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|262552653|gb|EEZ08643.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
          Length = 323

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV  +S ++  +        +H
Sbjct: 145 VAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGSSHVVNYDLPDEPETYVH 204

Query: 578 QLRGRVGRGEEISSCILLYHP 598
           ++ GR GR     + I LY P
Sbjct: 205 RI-GRTGRNGASGASITLYDP 224


>gi|260663555|ref|ZP_05864445.1| primosomal protein N [Lactobacillus fermentum 28-3-CHN]
 gi|260552096|gb|EEX25149.1| primosomal protein N [Lactobacillus fermentum 28-3-CHN]
          Length = 805

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 269 IPFSPT------KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +P SPT      + Q  A+K I Q   Q+     +LQG  GSGKT V L A+  A+  G 
Sbjct: 259 LPTSPTAPPTLNQEQAQAVKRINQATDQRTAETFLLQGVTGSGKTEVYLRAIERALANGR 318

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   L  Q    + +        V ++   +    R     RI  G+A +++G 
Sbjct: 319 SALMLVPEISLTPQ---IVSRVRGRFGKQVAVLHSGLSNGERYDEWRRIKRGEAKVVVGA 375

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            +     +    + L+I+DE+H    +Q
Sbjct: 376 RSAVFAPLD--NVGLIIMDEEHESSYKQ 401


>gi|255349176|ref|ZP_05381183.1| primosome assembly protein PriA [Chlamydia trachomatis 70]
 gi|255503713|ref|ZP_05382103.1| primosome assembly protein PriA [Chlamydia trachomatis 70s]
          Length = 753

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 89/211 (42%), Gaps = 18/211 (8%)

Query: 269 IPFSPTKSQE--SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           +P  PT +QE   A+  I Q +  +     +L G  GSGKT V L  +  A   G   ++
Sbjct: 208 LPDPPTLNQEQLDAVNTISQSLVAEQFQTCLLFGVTGSGKTEVYLQVIRKARALGKSVIL 267

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   L  Q   F K +  +    V ++   +  + R +   + + G  +IIIG  +  
Sbjct: 268 LVPEVALTIQTLSFFKMHFGSE---VGVLHYKLSDSERTQTWHKASRGLINIIIGPRSAI 324

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATPIPRTL 435
              IQ   L L+IVDE+H    +Q              +  K T   V+L +ATP   + 
Sbjct: 325 FCPIQ--NLGLIIVDEEHDSAYKQSDLPPFYQARDVAVMRGKMTNATVILGSATPSLESY 382

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                    +S ++++ +   P K  +I +N
Sbjct: 383 TNALSKKYTLSVLSKRASTSTPTKVFLIDMN 413


>gi|222144592|gb|ACM46113.1| DDX3/PL10 DEAD-box RNA helicase [Schmidtea polychroa]
          Length = 458

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 143/327 (43%), Gaps = 45/327 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ---------------AVIMAPIGILAQQHYEFIKKYTQ 346
            GSGKT   LI +   +   G                A+I+AP   LA Q YE  +K++ 
Sbjct: 2   TGSGKTAAFLIPLLNMMYNDGPGNSLSRTGYKKEYPVALILAPTRELALQIYEEARKFSY 61

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVD 401
            + +   ++ G    A  R  L+ ++ G  ++++ T     D ++  ++ L     +++D
Sbjct: 62  RSLVRPCVVYGG---ADIRNQLQDLSQG-CNMLVATPGRLSDMLERCRIGLDCIRYLVLD 117

Query: 402 EQHRF---GVQQRL-KLTQKATAP-----HVLLMTATPIPRTLVLTS--LGDIDISKITE 450
           E  R    G + ++ K+ ++   P       L+ +AT      +L S  L D    ++ +
Sbjct: 118 EADRMLDMGFEPQIRKIVEQTNMPPPGQRQTLMFSATFPKEIQMLASDFLQDYLFLRVGK 177

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             +  + I   I+ ++   E  + L  +L++      I   +E K+ ++    +E F  L
Sbjct: 178 VGSTSQNITQRIVYVDE-SEKRDHLLDILADIDSESLILVFVETKRGAD---SLEGF--L 231

Query: 511 H-EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           H E F   +A IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I  +  
Sbjct: 232 HGEGF--RVASIHGDRSQSDRELALQCFRDGRTPILVATAVAARGLDIPNVKFVINYDLP 289

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY 596
                 +H++ GR GR   +   I  Y
Sbjct: 290 TDIEEYVHRI-GRTGRVGNLGEAISFY 315


>gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 678

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 28/291 (9%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++AP   LA Q     +KY + T++   ++ G +    + K L+R       ++I T
Sbjct: 75  RALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQEKKLDR----GVDVLIAT 130

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D  +  KL++     ++VDE  R      L +        +  MT  P  +TL  
Sbjct: 131 PGRLLDHFERGKLLMTGVQFLVVDEADRM-----LDMGFIPDIERIFKMT-PPKKQTLFF 184

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL--KVVLSEGKKAYWICPQIEEK 495
           ++    +I+++T++   + P++         +E I +L  KV  S+ K        + EK
Sbjct: 185 SATMPPEITRLTKQ-FLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLALRALIEK 243

Query: 496 KE-------SNFRSVVERF-NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +        N ++ V+    SL  H   + AI HG +    +   + +F++G+ K+L+A
Sbjct: 244 AQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAI-HGDLDQSQRTKTLAAFRDGSLKILVA 302

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + V   G+D+   S +   +  H     +H++ GR GR        +L  P
Sbjct: 303 SDVAARGLDIPAVSHVFNYDVPHHADDYVHRI-GRTGRAGRSGVTYMLVTP 352


>gi|332834196|ref|XP_003312635.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan troglodytes]
          Length = 715

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 137/335 (40%), Gaps = 53/335 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   +             Q +++AP   LA Q  +     T+ 
Sbjct: 159 IAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITK- 217

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +    ER+ +G   I++GT    +D IQ  KL L     V++DE
Sbjct: 218 -KLSVACFYGGTPYGGQ---FERMRNG-IDILVGTPGRIKDHIQNGKLDLTKLKHVVLDE 272

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTAT------PIPRTLVLTSLGDID-I 445
             +         V++ L +  K  +   P  LL +AT       + +  + ++   +D I
Sbjct: 273 VDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 332

Query: 446 SKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
            K T+K A    ++ + I  +   R   + + ++V      +    C   +E +E +  S
Sbjct: 333 GKKTQKTA--ITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 390

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +++              +HG +    +E  +  F+NG+  +L+AT V   G+D+ +  +
Sbjct: 391 AIKQ----------DAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDL 440

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +I  +      + +H+  GR GR      CI  Y 
Sbjct: 441 VIQSSPPKDVESYIHR-SGRTGRAGRTGVCICFYQ 474


>gi|298291343|ref|YP_003693282.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296927854|gb|ADH88663.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 499

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 151/380 (39%), Gaps = 53/380 (13%)

Query: 253 IPINVEGKIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +P N  G ++ K+L  +  +    PT  Q  AI  +L     +  +L + Q   G+GKT 
Sbjct: 1   MPFNELG-LSDKVLSAVADAGYTEPTPIQAQAIPHVLA----RRDVLGLAQ--TGTGKTA 53

Query: 309 VALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
              + M   +E G       + +I+ P   LA Q  E   KY +N ++ V ++ G +   
Sbjct: 54  AFTLPMLTMLEQGRARARMPRTLILEPTRELAAQVEENFTKYGKNHKLNVALLIGGVSFG 113

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQ 410
            +   L R       ++I T     D ++  +L+L     +++DE  R         +++
Sbjct: 114 DQDAKLLR----GVDVLIATPGRLLDHVERGRLLLSGIEILVIDEADRMLDMGFIPDIER 169

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGD---IDISKITEKPAGRKPIKTVIIPINR 467
             KL            T  P  + LV   L +   ++ S+ +   A    I   ++   +
Sbjct: 170 VCKLVPFTRQTLFFSATMPPEIQRLVAQFLSNPVQVEASRPSSTAAN---ITQFLVACGK 226

Query: 468 ID----EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
            D    E +  L       +     C +  E       +VV +  SL  H  + +A+ HG
Sbjct: 227 EDFAKRETLRELINSADNLQNGIIFCNRKSEV------AVVHK--SLKRHGFNVVAL-HG 277

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            M    +   +D F+ G   LL+A+ V   G+D+   S +   +  H     +H++ GR 
Sbjct: 278 DMDQRSRMQALDQFRTGEANLLVASDVAARGLDIPAVSHVFNYDTPHHAEDYVHRI-GRT 336

Query: 584 GRGEEISSCILLYHPPLSKN 603
           GR     +   L  P  +K+
Sbjct: 337 GRAGRSGAAFTLVTPADTKS 356


>gi|302910116|ref|XP_003050220.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256731157|gb|EEU44507.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 407

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 143/355 (40%), Gaps = 61/355 (17%)

Query: 262 AQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           A+ +LR I      SP+  Q  AI  + +          I Q   G+GKT    I+M   
Sbjct: 41  AENLLRGIYAYGYESPSAVQSRAIVQVCKGRDT------IAQAQSGTGKTATFSISMLQV 94

Query: 318 VEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           +       QA++++P   LA Q    +        +      G        + + ++ HG
Sbjct: 95  INIAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVG---EDIRKLDHG 151

Query: 375 QAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAP--HVL 424
           Q HI+ GT     D I+   L      ++++DE       G ++++    +   P   V+
Sbjct: 152 Q-HIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVV 210

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +++AT     L +T+       K    P        V I + R +  +E LK      +K
Sbjct: 211 VVSATLPYDVLDMTT-------KFMTDP--------VRILVKRDELTLEGLKQYFIAVEK 255

Query: 485 AYWICPQIEEKKES----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             W    + +  ++          N R  V+           +++ +HG M   +++S+M
Sbjct: 256 EDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIM 315

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
             F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 316 QDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 365


>gi|227515680|ref|ZP_03945729.1| primosomal replication protein n [Lactobacillus fermentum ATCC
           14931]
 gi|227085928|gb|EEI21240.1| primosomal replication protein n [Lactobacillus fermentum ATCC
           14931]
          Length = 805

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 269 IPFSPT------KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +P SPT      + Q  A+K I Q   Q+     +LQG  GSGKT V L A+  A+  G 
Sbjct: 259 LPTSPTAPPTLNQEQAQAVKRINQATDQRTAETFLLQGVTGSGKTEVYLRAIERALANGR 318

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   L  Q    + +        V ++   +    R     RI  G+A +++G 
Sbjct: 319 SALMLVPEISLTPQ---IVSRVRGRFGKQVAVLHSGLSNGERYDEWRRIKRGEAKVVVGA 375

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            +     +    + L+I+DE+H    +Q
Sbjct: 376 RSAVFAPLD--NVGLIIMDEEHESSYKQ 401


>gi|210623578|ref|ZP_03293904.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
 gi|210153448|gb|EEA84454.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
          Length = 538

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 139/331 (41%), Gaps = 46/331 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I +   ++      QA+++ P   LA Q  + I+K  +  Q I  
Sbjct: 45  IGQAQTGTGKTAAFSIPILEKIDPNDRSLQAIVLCPTRELAIQVSQEIRKLAKYMQGIKT 104

Query: 354 I-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF- 406
           + I G  P   + KAL+    G   +IIGT     D     +I+   + +V++DE     
Sbjct: 105 LPIYGGQPIDRQIKALK----GGVQVIIGTPGRTIDHIKRKTIKPGNVKMVVLDEADEML 160

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKT 460
             G ++ ++  L            +AT     L LT     + +  K+  K    + IK 
Sbjct: 161 DMGFREDIETILENVPEERQTTFFSATMPKAILELTKKYQNEPEHIKVVRKELTVENIKQ 220

Query: 461 VIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             I     N+I EV+ RL + +   K +   C        +  +   E    L      +
Sbjct: 221 YYIETRASNKI-EVLSRL-IDVYNPKLSVVFC--------NTKKGADELVGELQGRGYFA 270

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-- 575
            A+ HG +  + ++ VMD F+NGT  +L+AT V   GIDV D   +      +F L Q  
Sbjct: 271 DAL-HGDLKQVQRDIVMDKFRNGTIDILVATDVAARGIDVDDVECVF-----NFDLPQDE 324

Query: 576 ---LHQLRGRVGR-GEEISSCILLYHPPLSK 602
              +H++ GR GR G E  S   +Y   + K
Sbjct: 325 EYYVHRI-GRTGRAGREGLSFSFVYGRDMRK 354


>gi|76789520|ref|YP_328606.1| primosome assembly protein PriA [Chlamydia trachomatis A/HAR-13]
 gi|237803208|ref|YP_002888402.1| primosome assembly protein PriA [Chlamydia trachomatis B/Jali20/OT]
 gi|237805129|ref|YP_002889283.1| primosome assembly protein PriA [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311612|ref|ZP_05354182.1| primosome assembly protein PriA [Chlamydia trachomatis 6276]
 gi|255317913|ref|ZP_05359159.1| primosome assembly protein PriA [Chlamydia trachomatis 6276s]
 gi|255507393|ref|ZP_05383032.1| primosome assembly protein PriA [Chlamydia trachomatis D(s)2923]
 gi|76168050|gb|AAX51058.1| primosomal protein N' [Chlamydia trachomatis A/HAR-13]
 gi|231273429|emb|CAX10344.1| primosomal protein N' [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274442|emb|CAX11237.1| primosomal protein N' [Chlamydia trachomatis B/Jali20/OT]
 gi|289525822|emb|CBJ15303.1| primosomal protein N' [Chlamydia trachomatis Sweden2]
 gi|296435401|gb|ADH17579.1| primosome assembly protein PriA [Chlamydia trachomatis E/150]
 gi|296436327|gb|ADH18501.1| primosome assembly protein PriA [Chlamydia trachomatis G/9768]
 gi|296437257|gb|ADH19427.1| primosome assembly protein PriA [Chlamydia trachomatis G/11222]
 gi|296438186|gb|ADH20347.1| primosome assembly protein PriA [Chlamydia trachomatis G/11074]
 gi|296439118|gb|ADH21271.1| primosome assembly protein PriA [Chlamydia trachomatis E/11023]
 gi|297140687|gb|ADH97445.1| primosome assembly protein PriA [Chlamydia trachomatis G/9301]
          Length = 753

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 89/211 (42%), Gaps = 18/211 (8%)

Query: 269 IPFSPTKSQE--SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           +P  PT +QE   A+  I Q +  +     +L G  GSGKT V L  +  A   G   ++
Sbjct: 208 LPDPPTLNQEQLDAVNTISQSLVAEQFQTCLLFGVTGSGKTEVYLQVIRKARALGKSVIL 267

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   L  Q   F K +  +    V ++   +  + R +   + + G  +IIIG  +  
Sbjct: 268 LVPEVALTIQTLSFFKMHFGSE---VGVLHYKLSDSERTQTWHKASRGLINIIIGPRSAI 324

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATPIPRTL 435
              IQ   L L+IVDE+H    +Q              +  K T   V+L +ATP   + 
Sbjct: 325 FCPIQ--NLGLIIVDEEHDSAYKQSDLPPFYQARDVAVMRGKMTNATVILGSATPSLESY 382

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                    +S ++++ +   P K  +I +N
Sbjct: 383 TNALSKKYTLSVLSKRASTSTPTKVFLIDMN 413


>gi|302812373|ref|XP_002987874.1| hypothetical protein SELMODRAFT_447130 [Selaginella moellendorffii]
 gi|300144493|gb|EFJ11177.1| hypothetical protein SELMODRAFT_447130 [Selaginella moellendorffii]
          Length = 483

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 147/355 (41%), Gaps = 84/355 (23%)

Query: 258 EGKIAQKILRNIPFS------PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           E KI++ +LR I +S      P+K Q   +  I   M+  +R L + Q   GSGKT   +
Sbjct: 85  ELKISEPLLRGI-YSEMKFERPSKIQAETLPLI---MNPPHRNL-VAQAHNGSGKTTCFV 139

Query: 312 IAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           + M + V       QA+ + P   LA Q+   +++  + TQI    I   +P     K+ 
Sbjct: 140 LGMLSRVNTSLHEPQALCVCPTRELALQNQAVLERMARFTQITSTCI---IPPTENIKSS 196

Query: 369 ERIAHGQAHIIIGT-----HALFQD-SIQYYKLILVIVDEQHR---------FGVQQRLK 413
            R  H    +I GT      A+  D ++    L +++ DE            F ++   +
Sbjct: 197 LR-GHIHDQVIFGTPGSLERAILNDRNLDVQHLNVLVFDEADHMLDQNGFRDFSMKLLRR 255

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-NRIDEVI 472
           + ++A +  +LL +AT                   +EK    K   +  IPI NR+   +
Sbjct: 256 INKQAPSCQLLLFSAT------------------FSEKV---KNFVSKSIPIANRV--FV 292

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKE--------------------SNFRSVVERFNSLHE 512
           E+L++ L   K+    CP    K E                     + RSV E    LHE
Sbjct: 293 EKLELSLDVIKQYRVNCPTERAKFEVLKDRIYPIAEKLGQSIIFAESRRSVTE----LHE 348

Query: 513 HFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +     + IHG      ++ ++D F+ G  ++LI+T V+  G DV   ++++
Sbjct: 349 KLEADGHKCSSIHGGYKPDVRDKIIDEFRQGITRILISTDVLSRGFDVAQVTLVV 403


>gi|297595326|gb|ADI48178.1| vasa [Crepidula fornicata]
          Length = 502

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 145/354 (40%), Gaps = 51/354 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKTLVALIAMAAAVEAGG-------- 322
           PT  Q+ AI  IL          R L G    GSGKT   ++ +  A+   G        
Sbjct: 80  PTPIQKHAIPSILAG--------RDLMGCAQTGSGKTAAFILPVLTAMVKEGLTCSPMSE 131

Query: 323 ----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               Q +++AP   LA Q Y   +K+   T +   ++ G +  AH+ + +E      A++
Sbjct: 132 FQEPQTIVVAPTRELASQIYTEARKFALRTDVRPVVVYGGVSVAHQLRQVE----SGANL 187

Query: 379 IIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRL-KLTQKATAP-----HVL 424
           ++GT     D I+  K+ +     +I+DE  R    G +  + KL +    P       L
Sbjct: 188 VVGTPGRLLDFIERGKISVKKVKFLILDEADRMLDMGFEPSIRKLVESLGMPSKSERQTL 247

Query: 425 LMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           + +AT     + L    + D     +         ++   + ++R+ +      ++ S G
Sbjct: 248 MFSATFKAEIQQLAADFMNDYLFITVGIVGGACSDVEQTFLEVDRLQKREYLCDILNSSG 307

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                +   + +K+ ++F   +  F S   + T+SI   HG     ++E  +  FK G  
Sbjct: 308 TNRVLVF--VGQKRNADF---LASFLSQSGYPTTSI---HGDRLQREREEALMDFKRGKS 359

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            +LIAT V   G+D+ D + ++  +        +H++ GR GR   +      Y
Sbjct: 360 PVLIATNVAARGLDIPDVTHVVNYDLPTDIDEYVHRI-GRTGRCGNLGKATSFY 412


>gi|160886022|ref|ZP_02067025.1| hypothetical protein BACOVA_04028 [Bacteroides ovatus ATCC 8483]
 gi|156108835|gb|EDO10580.1| hypothetical protein BACOVA_04028 [Bacteroides ovatus ATCC 8483]
          Length = 444

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 141/369 (38%), Gaps = 50/369 (13%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           +I Q  LRN+        + A   + Q   +K+    IL    GSGKTL  L+ +   ++
Sbjct: 6   EIIQSALRNLKIEELNPMQEA--SLEQATGRKDV---ILLSPTGSGKTLAYLLPLLLTLK 60

Query: 320 AGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 Q +I+ P   LA Q     K     T        G  P A  +K+   I     
Sbjct: 61  PNDDSVQVLILVPSRELALQIDSVFK--AMGTSWKTCCCYGGHPIAEEKKS---ILSNHP 115

Query: 377 HIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLM 426
            IIIGT     D +            LI+   D+   FG    +   +TQ       +L+
Sbjct: 116 AIIIGTPGRITDHLSKGNFNPETIETLIIDEFDKSLEFGFHDEMAEIITQLPGLKKRMLL 175

Query: 427 TATP---IPRTLVLTSLGDID-ISKITEKPAGRKPIKTVIIPI-NRIDEVIERLKVVLSE 481
           +AT    IP    L     +D +S  +E+   R  +  V+ P  ++ID +   L  + S 
Sbjct: 176 SATDAAEIPEFTGLNRTVKLDFLSDDSEEQESRLKLMKVLSPSKDKIDTLYNLLCTLGSS 235

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
               +            N R  V+R + L           HG M   D+E  +  F+NG+
Sbjct: 236 SSIVF-----------CNHRDAVDRVHQLLADKKLLAERFHGGMEQPDRERALYKFRNGS 284

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQLHQLRGRVGRGEEISSCILLY 596
           C +LI+T +   G+D+ +   II     H+ L     A  H+  GR  R +   +  L+ 
Sbjct: 285 CHVLISTDLAARGLDIPEVGHII-----HYHLPVNEEAFTHR-NGRTARWDATGTSYLIL 338

Query: 597 HPPLSKNSY 605
           H      SY
Sbjct: 339 HAEEKLPSY 347


>gi|156540306|ref|XP_001599143.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 476

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 146/345 (42%), Gaps = 57/345 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           SP+K QE+A+  +L D  Q      I Q   G+GKT   ++AM + V+      Q + ++
Sbjct: 111 SPSKIQETALPTLLADPPQN----MIAQSQSGTGKTAAFVLAMLSRVDTSKMYPQILCLS 166

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   + ++    I       +  A R + + R +  + HI+IGT     D
Sbjct: 167 PTYELAIQTGEVAARMSKFCPDI------KLKFAVRGEEMARGSKIEEHIVIGTPGKVLD 220

Query: 389 SIQYYKL-----ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               +K      I V+V ++    +  +    Q      +L  T     + +  ++  D 
Sbjct: 221 WALKFKFFDLKKISVLVLDEADVMIATQGHQDQCIRIHKMLPQTC----QMMFFSATYDK 276

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--SNFR 501
           ++    E          +II + + +E ++ +K       + Y  C    EK +  +N  
Sbjct: 277 EVMDFAEIIVSN----PIIIRLLKEEESLDNIK-------QYYVKCKDPAEKYQAITNIY 325

Query: 502 SVV------------ERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            V+            +  + L E  T    S+AI+ G ++  ++ SV+D F+ G  K+LI
Sbjct: 326 GVITIGQAIIFCHTKKTASWLAEKMTKDGHSVAILSGDLTVSERISVLDRFREGLEKVLI 385

Query: 547 ATTVIEVGIDVVDASIII------IENAEHFGLAQLHQLRGRVGR 585
            T V+  GIDV   +I++       +N E      LH++ GR GR
Sbjct: 386 TTNVLARGIDVEQVTIVVNFDLPMDQNREADCETYLHRI-GRTGR 429


>gi|186473609|ref|YP_001860951.1| ATP-dependent DNA helicase RecQ [Burkholderia phymatum STM815]
 gi|184195941|gb|ACC73905.1| ATP-dependent DNA helicase, RecQ family [Burkholderia phymatum
           STM815]
          Length = 590

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 13/148 (8%)

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            ER  +    +  + A+ HGR++   + +  D+F  G  +++IAT    +GID  D   +
Sbjct: 277 AERLAAAIREWGVTTALYHGRLTARARHAAQDTFMRGEARVMIATNAFGMGIDKGDIRFV 336

Query: 564 IIENAEHF----GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           +     H+     +   +Q  GR GR  E + C+LL+   LS     +  ++    D  L
Sbjct: 337 V-----HYQMPGSIDAYYQETGRAGRDGEPADCMLLFD--LSDRRVQQFLMIGRYPDRDL 389

Query: 620 IAE--EDLKQRKEGEILGIKQSGMPKFL 645
           +A   + L++       G+    + K L
Sbjct: 390 VARVHDALRRSDAASGTGVSAGDLAKLL 417


>gi|85859100|ref|YP_461302.1| primosomal protein N' [Syntrophus aciditrophicus SB]
 gi|85722191|gb|ABC77134.1| primosomal protein N' - superfamily II helicase [Syntrophus
           aciditrophicus SB]
          Length = 809

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 90/213 (42%), Gaps = 16/213 (7%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q +A  ++   +S +     +L G  GSGKT V   A+  A+ +GG A+ + P   L  Q
Sbjct: 272 QAAACGELESALSSRRFKPFLLHGVTGSGKTEVYFHAIKQALNSGGGALYLVPEIGLTPQ 331

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKL 395
               ++   Q  +I V  I  ++ +  R     R+  G+  +++G   ALF        L
Sbjct: 332 LLSRVRNRFQGEEIAV--IHSDIARGIRYDFWRRLQRGEIRLVVGARSALFA---PLPNL 386

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLGDIDI 445
            L+++DE+H    +Q +++   A    VL          L +ATP  RT      G  D 
Sbjct: 387 RLIVIDEEHDSSYKQDVRMRYHARDLAVLRAKLQNAVIVLGSATPDMRTFYQARQGKYDC 446

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             +  +   R   +  I+ +    E   R+ V+
Sbjct: 447 LSLPRRVENRPLPQVRIVDMKAEREETGRIPVL 479


>gi|323492311|ref|ZP_08097466.1| primosome assembly protein PriA [Vibrio brasiliensis LMG 20546]
 gi|323313438|gb|EGA66547.1| primosome assembly protein PriA [Vibrio brasiliensis LMG 20546]
          Length = 733

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 7/137 (5%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   +E G QA+++ P IG+  Q    F K++     + VE+I
Sbjct: 221 LLEGVTGSGKTEVYLNLIKPVLEKGRQALVLVPEIGLTPQTINRFRKRFN----VPVEVI 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    R  A        A I+IGT +       +  L ++IVDE+H    +Q+  L 
Sbjct: 277 HSGLNDTERLNAWLSARDNAAGIVIGTRSALLTP--FANLGIIIVDEEHDASYKQQDSLR 334

Query: 416 QKATAPHVLLMTATPIP 432
             A    V+      IP
Sbjct: 335 YHARDVAVMRANKEQIP 351


>gi|323138624|ref|ZP_08073691.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
 gi|322396112|gb|EFX98646.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
          Length = 496

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 143/360 (39%), Gaps = 65/360 (18%)

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++QK+L  +  S    PT  Q  AI   LQ       +L I Q   G+GKT    + M +
Sbjct: 8   LSQKVLAAVQASGYTTPTPIQAQAIPPALQGRD----ILGIAQ--TGTGKTAAFTLPMLS 61

Query: 317 AVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +E G       + +I+ P   LA Q  E   KY  N ++ V ++ G +    +   + R
Sbjct: 62  RLEQGRARARVPRTLILEPTRELAAQVEESFAKYGANHKLNVALLIGGVSFGDQEAKIMR 121

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-L 424
                A ++I T     D     KL+L     +++DE  R        +      P +  
Sbjct: 122 ----GADVLIATPGRLLDFFDRGKLLLTGIEILVIDEADR--------MLDMGFIPDIER 169

Query: 425 LMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG- 482
           +    P  R TL  ++    +I+++TE      PI+  +   +     I R  +V S G 
Sbjct: 170 VCKLVPFTRQTLFFSATMPPEITRLTEA-FLHNPIRIEVARASTTASTI-RQALVASRGH 227

Query: 483 -----------------KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
                            K A   C        +  R V     SL +H   + A+ HG M
Sbjct: 228 ADKRETLRNLIRGAENLKNAIVFC--------NRKRDVAILHRSLVKHGFPAGAL-HGDM 278

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
             + + + +D+FKNG   +L+ + V   G+D+ D S +   +        +H++ GR GR
Sbjct: 279 DQLARMASLDAFKNGDVAILVCSDVAARGLDIPDVSHVFNFDVPTHSEDYVHRI-GRTGR 337


>gi|317182320|dbj|BAJ60104.1| primosome assembly protein PriA [Helicobacter pylori F57]
          Length = 619

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + ++A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHSA-SLLFGDTGSGKTEIYMHSIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      + + +N    + +    + Q  +++ LER+   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKRVFKEN----LGLWHSKISQTQKKQFLERLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 219 LKELGLIIVDEEHDFS 234


>gi|262041706|ref|ZP_06014898.1| primosomal protein N [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259040968|gb|EEW42047.1| primosomal protein N [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 755

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ Q     VE++
Sbjct: 244 LLAGITGSGKTEVYLSVLENVLAQGRQALVMVPEIGLTPQT----IARFRQRFNAPVEVL 299

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 300 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKDLGVIVIDEEHDSSYKQQ 353


>gi|332360395|gb|EGJ38207.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK49]
          Length = 363

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 141/339 (41%), Gaps = 51/339 (15%)

Query: 302 VGSGKTLVALIA--MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            G+GKTL  L    +    +   Q +I+AP   LA Q +E  K + +   +  +++    
Sbjct: 46  TGTGKTLAYLFPSLLRLTPKKAQQLLILAPNTELAGQIFEVCKTWAEPLGLTAQLLLSGS 105

Query: 360 PQAHRRKALERIAHGQAHIIIGTHA-LFQ----DSIQYYKLILVIVDEQHRFGVQQRLKL 414
            Q   ++ +ER+  G   IIIGT   +F+      I+   +  +I+DE  +     +   
Sbjct: 106 SQ---KRQIERLKKG-PEIIIGTSGRIFELAKLKKIKMMNVETIILDEFDQLLSDSQYHF 161

Query: 415 TQKAT--AP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             K T  AP    ++ M+AT              D  KITE         T+ I I+  D
Sbjct: 162 VDKITHYAPRDHQLVYMSAT-----------AKFDHDKITEN--------TLEISID--D 200

Query: 470 EVIERLKVVLSEGKKAYWI-----CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
           +V++ ++    + +K   +        +EE +   F + +    S  E      A     
Sbjct: 201 QVLDNIQHFYMQVEKRDKVDLLRKLSNVEEFRGLVFFNALSDLGSAEEKLQYREANAVSL 260

Query: 525 MSDID---KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            SD++   ++ ++D FK     LL+AT ++  GID +D+   ++       L       G
Sbjct: 261 ASDVNVKFRKVILDKFKEHQITLLLATDLVARGID-IDSLECVVNYELPRDLETYTHRSG 319

Query: 582 RVGR-GEEISSCILLYHP----PLSKNSYTRLSVLKNTE 615
           R GR G+E     L+ HP     L K +  R  VLKN E
Sbjct: 320 RTGRMGKEGYVITLISHPEEVKTLKKYASVREIVLKNQE 358


>gi|308498555|ref|XP_003111464.1| hypothetical protein CRE_03767 [Caenorhabditis remanei]
 gi|308241012|gb|EFO84964.1| hypothetical protein CRE_03767 [Caenorhabditis remanei]
          Length = 405

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 145/344 (42%), Gaps = 62/344 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AI  IL     K R + I Q   G+GKT    I++  +++      QA+I++P
Sbjct: 52  PSAIQQRAIPAIL-----KARDV-IAQAQSGTGKTATFSISVLQSLDTQVRETQALILSP 105

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +      G     +  + + ++ +GQ H++ GT     D 
Sbjct: 106 TRELAVQIQKVVLALGDYMNVQCHACIGG---TNLGEDIRKLDYGQ-HVVSGTPGRVFDM 161

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G +++L    +   P   V+L++AT     L +TS
Sbjct: 162 IRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTS 221

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINR----IDEVIERLKVV--------LSEGKKA 485
               D  +I  K      + IK   + ++R     D +I+    +         +  +K 
Sbjct: 222 KFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKV 281

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+  ++   KE+NF                +++ +HG M   D++ VM  F+ GT ++L
Sbjct: 282 DWLTDKM---KEANF----------------TVSSMHGDMEQKDRDEVMKEFRAGTTRVL 322

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR----GRVGR 585
           I+T V   G+DV   S  ++ N  ++ L    +L     GR GR
Sbjct: 323 ISTDVWARGLDVPQVS--LVSNVINYDLPNNRELYIHRIGRSGR 364


>gi|307104817|gb|EFN53069.1| eukaryotic initiation factor 4A (ATP-dependent RNA helicase eIF4A)
           [Chlorella variabilis]
          Length = 410

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 124/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       +   
Sbjct: 78  IQQAQSGTGKTATFCAGILQNLDYTLVECQALVLAPTRELAQQIEKVMRALGDYLNVKCH 137

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +   RI     H+++GT           AL  D+I+ +  +L   DE 
Sbjct: 138 ACVGGTSV----REDTRILQSGVHVVVGTPGRVYDMLRRRALRADAIKMF--VLDEADEM 191

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++    +   P   V + +AT  P  L +T        K   KP        V
Sbjct: 192 LSRGFKDQIYDIFQLLPPKIQVGVFSATLPPEALEITR-------KFMNKP--------V 236

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      ++  W    + +  E+          N R  V+      
Sbjct: 237 RILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFANTRRKVDWLTDKM 296

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +  + 
Sbjct: 297 RERDHTVSATHGDMDQNTRDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPNN 356

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 357 PENYLHRI-GRSGR 369


>gi|290513058|ref|ZP_06552421.1| primosomal protein N [Klebsiella sp. 1_1_55]
 gi|289774440|gb|EFD82445.1| primosomal protein N [Klebsiella sp. 1_1_55]
          Length = 731

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ Q     VE++
Sbjct: 220 LLAGITGSGKTEVYLSVLENVLAQGRQALVMVPEIGLTPQT----IARFRQRFNAPVEVL 275

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 276 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKDLGVIVIDEEHDSSYKQQ 329


>gi|238892338|ref|YP_002917072.1| primosome assembly protein PriA [Klebsiella pneumoniae NTUH-K2044]
 gi|238544654|dbj|BAH61005.1| primosome assembly protein [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 755

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ Q     VE++
Sbjct: 244 LLAGITGSGKTEVYLSVLENVLAQGRQALVMVPEIGLTPQT----IARFRQRFNAPVEVL 299

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 300 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKDLGVIVIDEEHDSSYKQQ 353


>gi|228968588|ref|ZP_04129573.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791080|gb|EEM38697.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 481

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 134/326 (41%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID-ISKITEKPAGRKPIKTVI 462
             F  Q    + +  T    +L +AT +P         D++ +S+          IK   
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPE--------DVEKLSRTYMNSPTHIEIKAAG 211

Query: 463 IPINRID----EVIERLK------VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           I  ++I+    E IE  K      V + E   +  I  + +E  +  +R + +R N   +
Sbjct: 212 ITTDKIEHTLFEAIEDEKFSLLKDVTMIENPDSCIIFCRTQENVDHVYRQL-KRANYPCD 270

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                   IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +     
Sbjct: 271 K-------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEK 323

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
            + +H+  GR GR       I    P
Sbjct: 324 ESYVHRT-GRTGRAGNSGKAITFITP 348


>gi|229014620|ref|ZP_04171734.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides DSM 2048]
 gi|228746631|gb|EEL96520.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides DSM 2048]
          Length = 464

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 139/348 (39%), Gaps = 48/348 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAP 329
           PT+ Q   I   LQ      R   +++   GSGKT    + L  M    E   QA+++ P
Sbjct: 27  PTEVQGEVIPVALQ------RKDLVVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTP 80

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I    +  +I    + G  P A ++  L++    + HI++GT     D 
Sbjct: 81  TRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDH 136

Query: 390 IQYYKL------ILVI--VDEQHRFG-VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           I+   L       LVI   DE    G + Q   +  +     + ++ +  +P+ +   S 
Sbjct: 137 IEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTMLFSATLPKDVEKLSR 196

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK----------VVLSEGKKAYWICP 490
             +D     E       IK   I  ++I+ ++  ++          V   E   +  I  
Sbjct: 197 TYMDSPTHIE-------IKATGITTDKIEHILFEMREEEKLSLLKDVTTIENPDSCIIFC 249

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           + +E  +  F+ + +R N   +        IHG M   D+  VMD F+ G  + L+AT V
Sbjct: 250 RTQENVDHVFQQL-KRVNYPCDK-------IHGGMVQEDRFEVMDDFRKGKFRYLVATDV 301

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              GID+ + + +I  +      + +H+  GR GR       I    P
Sbjct: 302 AARGIDIDNITHVINYDIPLEKESYVHRT-GRTGRAGNNGKAITFMTP 348


>gi|218248985|ref|YP_002374356.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 8801]
 gi|257062070|ref|YP_003139958.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
 gi|218169463|gb|ACK68200.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8801]
 gi|256592236|gb|ACV03123.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
          Length = 485

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 149/349 (42%), Gaps = 47/349 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGKTLVALIAMAAAVEAGG---QAVIM 327
           SPT+ Q+ AI  +L+          IL Q   G+GKT    + +   V+      QA+I+
Sbjct: 25  SPTEIQQKAIPLLLEGHD-------ILGQSQTGTGKTAAYSLPILEQVDVKNPNVQALIL 77

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LAQQ    +K ++   ++ +  + G      + ++LER       I++GT     
Sbjct: 78  TPTRELAQQVALALKDFSTERRLYILTVYGGQSIERQIRSLER----GVQIVVGTPGRVI 133

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTL-- 435
           D +   KL        +L   DE    G    +K  L Q          +AT +PR +  
Sbjct: 134 DLLDRKKLSFEGLRWAVLDEADEMLSMGFIDDVKKILKQTPDTRSTACFSAT-MPREIRE 192

Query: 436 VLTSLGDIDISKITEKP-AGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIE 493
           ++       ++   E+P A    I+  +  + R    ++ L+ +L  E  ++  I  + +
Sbjct: 193 LVNQFLKSPVTVAVEQPQAAPSKIEQHLYNVPRGWSKLKALQPILELEAPESAIIFVRTK 252

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           +        + E   S+ E+        HG +S   +E ++  F+ G  KL++AT +   
Sbjct: 253 QTAAELTCKLQEAGQSVDEY--------HGNLSQSQRERLVYRFREGKIKLVVATDIAAR 304

Query: 554 GIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+DV + S +I     +NAE +    +H++ GR GR  +  + I L  P
Sbjct: 305 GLDVENLSHVINYDLPDNAETY----IHRI-GRTGRAGKTGTAISLVEP 348


>gi|154285130|ref|XP_001543360.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1]
 gi|160385733|sp|A6QSQ0|FAL1_AJECN RecName: Full=ATP-dependent RNA helicase FAL1
 gi|150407001|gb|EDN02542.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1]
          Length = 450

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 147/354 (41%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVLRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + + ++ HGQ H++ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVG---EDIRKLDHGQ-HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT +P      
Sbjct: 157 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT-LP------ 209

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E 
Sbjct: 210 ----YDVLDMTTKFMT-DPVRILV----------KRDELTL-EGLKQYFIAV---EKEEW 250

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 251 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 308

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 309 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 357


>gi|327262701|ref|XP_003216162.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Anolis
           carolinensis]
          Length = 420

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 60  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 113

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 114 TRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 166

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   P   V+L++AT     L 
Sbjct: 167 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 226

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEG 482
           +T+    D  +I  K      + IK   + + R +   + L             +  +  
Sbjct: 227 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 286

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 287 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 327

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 328 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 369


>gi|304411082|ref|ZP_07392698.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307301795|ref|ZP_07581553.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304350617|gb|EFM15019.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913833|gb|EFN44254.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 515

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/354 (19%), Positives = 145/354 (40%), Gaps = 60/354 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGG-QA 324
           +P+  Q  AI  +LQ    K+ M        G+GKT      ++ L++     +AG  +A
Sbjct: 23  TPSPIQAQAIPAVLQG---KDVMA---AAQTGTGKTAGFTLPMLELLSKGNRAQAGQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +N  +   +I G +P   +   + ++ HG   +++ T  
Sbjct: 77  LVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQ---IAKLRHG-VDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 133 RLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRK-------ILAILPKQRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
               D  +   K     P++  + P N     +++            W+CP  + +K   
Sbjct: 186 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQ------------WVCPVDKSQKSAL 233

Query: 497 ------ESNFRSVV---------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 +++++ V+          R     E      A IHG  S   +   +  FKNG 
Sbjct: 234 LIQLIKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQ 293

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            ++L+AT +   G+D+     ++  +  +     +H++ GR GR       + L
Sbjct: 294 ARVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGQAVSL 346


>gi|238491382|ref|XP_002376928.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
 gi|220697341|gb|EED53682.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
          Length = 665

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 121/300 (40%), Gaps = 42/300 (14%)

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+++AP   LAQQ     KK+T+     V  I G      +  +L       A III
Sbjct: 326 GPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSL----RNGAEIII 381

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLTQKA-----------TAP 421
            T     D I+   L+L     VI+DE  R    G ++ +     A            A 
Sbjct: 382 ATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSEEAE 441

Query: 422 HVLLM-----TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           + + M     T     +T++ T+     + +I  K   R  I T+      +D V +R++
Sbjct: 442 NSMAMSQHIGTKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVE 501

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----------SIAIIHGRMS 526
            +  E K+   +   +       FR  +  F ++  +  +          S   +HG  +
Sbjct: 502 FIAGEDKRKKRLGDIL---SSGEFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKT 558

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              +E+ + S +NG   +L+AT +   GIDV D S++I  N      +  H++ GR GR 
Sbjct: 559 QEQREAALASVRNGQTDVLVATDLAGRGIDVPDVSLVINFNMATTIESYTHRI-GRTGRA 617


>gi|146301226|ref|YP_001195817.1| primosomal protein N' [Flavobacterium johnsoniae UW101]
 gi|146155644|gb|ABQ06498.1| primosomal protein N' [Flavobacterium johnsoniae UW101]
          Length = 815

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 90/431 (20%), Positives = 163/431 (37%), Gaps = 127/431 (29%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           +++Q++A   I Q +++K   L  L G   SGKT + +  +   +  G Q + + P   L
Sbjct: 279 SEAQQNAFTAIKQSLTEKEVCL--LHGVTSSGKTEIYIKLIEEYLHTGRQVLYLLPEIAL 336

Query: 334 AQQ-------HYE-----FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             Q       H+      F  KY+ N +  VE+    +  + +           A I+IG
Sbjct: 337 TTQLVSRLRLHFGDKVAVFHSKYSNNER--VEVWKQTLENSEK-----------AQIVIG 383

Query: 382 TH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH---------------VLL 425
              ALF   + +  L L+IVDE+H    +Q  K T  A   H               VLL
Sbjct: 384 ARSALF---LPFNDLGLLIVDEEH----EQTFKQTDPAPRYHARDAAIVLANFHNAKVLL 436

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---------------IDE 470
            +ATP   T   T      +  +TE+    +  + V++ +                 I+E
Sbjct: 437 GSATPSIETYFNTQNDKYGLVTLTERYKNVRLPEVVLVDLKDKHFRKRMTGHFSDLLIEE 496

Query: 471 VIERL----KVVLSEGKKAY------WICPQIEEKKESNFRSVVERF-NSLHEHFT---- 515
           + E L    +V+L + ++ Y        C  +   ++ +      +F N L  H+     
Sbjct: 497 ITEALSLGEQVILFQNRRGYSPIIECLTCGHVPHCQQCDVSLTYHKFKNQLRCHYCGYAI 556

Query: 516 ---------SSIAII------------------HGRMSDIDK---------ESVMDSFKN 539
                    SSI +                     + + +D+         E ++D+FKN
Sbjct: 557 AKPTNCHSCSSIDLTTKGFGTEQIEQELASLFPKAKTARMDQDTTRGKFGFEKIIDTFKN 616

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHF-----------GLAQLHQLRGRVGRGEE 588
               +L+ T ++  G+D  + S++ I NA++                + Q+ GR GR E+
Sbjct: 617 REIDILVGTQMLAKGLDFDNVSLVGIMNADNMLHHPDFRAFERSFQMMTQVAGRAGRSEK 676

Query: 589 ISSCILLYHPP 599
               ++  + P
Sbjct: 677 QGKVVIQTYNP 687


>gi|1169228|sp|P46942|DB10_NICSY RecName: Full=ATP-dependent RNA helicase-like protein DB10
 gi|563986|dbj|BAA03763.1| RNA helicase like protein DB10 [Nicotiana sylvestris]
          Length = 607

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 148/359 (41%), Gaps = 50/359 (13%)

Query: 302 VGSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L+     ++        G   ++++P   LA Q      K+ ++++I    
Sbjct: 191 TGSGKTLGYLMPAFIHLQQRRKNPQLGPTILVLSPTRELATQIQAEAVKFGKSSRISCTC 250

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--- 406
           + G  P+  + + L R       I++ T     D ++  ++ L     +++DE  R    
Sbjct: 251 LYGGAPKGPQLRELSR----GVDIVVATPGRLNDILEMRRVSLGQVSYLVLDEADRMLDM 306

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           G + +++           ++   P+ R TL+ T+     + KI    A    + +V + I
Sbjct: 307 GFEPQIRK----------IVKEVPVQRQTLMYTATWPKGVRKI----AADLLVNSVQVNI 352

Query: 466 NRIDEVI------ERLKVVLSEGKKAYWICPQIEEKKESN-----FRSVVERFNSLHEHF 514
             +DE++      + ++VVL   K+      QI   KE       F S  +  + L  + 
Sbjct: 353 GNVDELVANKSITQHIEVVLPMEKQRR--VEQILRSKEPGSKIIIFCSTKKMCDQLSRNL 410

Query: 515 TSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           T +   A IHG  S  +++ V+  F+ G   +L+AT V   G+D+ D  ++I  +     
Sbjct: 411 TRNFGAAAIHGDKSQGERDYVLSQFRAGRSPVLVATDVAARGLDIKDIRVVINYDFPTGI 470

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
              +H++ GR GR          +    SK++   + VL+           D+  R  G
Sbjct: 471 EDYVHRI-GRTGRAGASGLAYTFFSDQDSKHALDLVKVLEGANQCVPTELRDMASRGGG 528


>gi|320580417|gb|EFW94640.1| Putative ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 499

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 128/287 (44%), Gaps = 34/287 (11%)

Query: 300 GDVGSGKTLV----ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            + GSGKT+     A+  +  +     Q +I++P   LA Q Y+ + + T    +    +
Sbjct: 134 AETGSGKTMAFGVPAVEHLLKSDSKALQVLIISPTRELASQIYDNLNELTAKVGLECVCV 193

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHA----LFQD-SIQYYKLILVIVDEQHRF---G 407
            G + +  +R+A++R     +  +I T      L +D SI   K+  +++DE  R    G
Sbjct: 194 YGGVSKDDQRRAVKR-----SQCVIATPGRLIDLIEDGSISLDKINYLVLDEADRMLEKG 248

Query: 408 VQQRLKLTQKATAPH--VLLMTATPIPRTLVLTSLGDID------ISKITEKPAGRK--P 457
            ++ +K   K T  +   L+ TAT  P+ +   ++  +D      I +  E  A ++   
Sbjct: 249 FEEDIKKVMKLTNGNRQTLMFTAT-WPKEVRELAMNFMDKPVKVTIGQRDELSANKRIQQ 307

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           I  V+ P  +  ++++ L+   S  KK   +      KKE+       R      +   S
Sbjct: 308 IVEVVDPREKEQKLLQLLRKYQSGSKKDDKLLIFALYKKEA------ARVEKTLTYKGFS 361

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +A +HG ++   +   +  FK G   +L+AT V   G+D+ +  ++I
Sbjct: 362 VAALHGDLNQAQRTQALQDFKAGKHNILLATDVAARGLDIPNVKVVI 408


>gi|295426392|ref|ZP_06819042.1| competence protein F [Lactobacillus amylolyticus DSM 11664]
 gi|295063760|gb|EFG54718.1| competence protein F [Lactobacillus amylolyticus DSM 11664]
          Length = 428

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 146/340 (42%), Gaps = 43/340 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q+     +L++ ++K   L  +    G+GKT +    +AA ++ G +A I  P I +
Sbjct: 94  TSQQQKVSTALLENFNKKKNTL--VHAVTGAGKTEMLFELIAACMKEGKRACIATPRIDV 151

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI-IIGTHALFQDSIQ 391
           + + +  F   + +       I  G   + H R   E    G   + I  TH L +    
Sbjct: 152 VNELYPRFEAAFAK-------IKIG---KYHGR---EYHDPGNDQLTICTTHQLLK---F 195

Query: 392 YYKLILVIVDEQHRF---GVQQ---RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           Y    L+++DE   F   G  Q     K   K T   V L TATP    L+    G+++I
Sbjct: 196 YQAFDLLVIDEVDSFPYVGNSQLHFAAKNAVKKTGVRVYL-TATPTEDLLLEAKSGELEI 254

Query: 446 SKITEK-PAGRKPI---KTVIIPI---NRID-EVIERLKVVLSEGKKAYWICPQIEEKKE 497
            K+  +   G  P+   K  + P    N+I+  ++  +K VL+         P+I+E   
Sbjct: 255 VKLNRRFHGGLLPVPKEKLFLRPFLKKNKINPNLLREVKKVLATDHPLLLFVPRIDE--- 311

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                 ++   +  +     IA +H   +D ++   +  F+ G   LLI TT++E G+  
Sbjct: 312 --VNIYLQALRTDPDLKKVHIAGVHA--ADSERIKKVQQFREGQLDLLITTTILERGVTF 367

Query: 558 VDASIIIIENAEH-FGLAQLHQLRGRVGRGEEISSCILLY 596
               +II+   +  +  A L Q+ GRVGR +     ++LY
Sbjct: 368 KHVWVIIVAADDPIYTTASLVQIAGRVGRDKNDQDGLVLY 407


>gi|184155728|ref|YP_001844068.1| primosomal protein N' [Lactobacillus fermentum IFO 3956]
 gi|183227072|dbj|BAG27588.1| primosomal protein N' [Lactobacillus fermentum IFO 3956]
          Length = 805

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 269 IPFSPT------KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +P SPT      + Q  A+K I Q   Q+     +LQG  GSGKT V L A+  A+  G 
Sbjct: 259 LPTSPTAPPTLNQEQAQAVKRINQATDQRTAETFLLQGVTGSGKTEVYLRAIERALANGR 318

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   L  Q    + +        V ++   +    R     RI  G+A +++G 
Sbjct: 319 SALMLVPEISLTPQ---IVSRVRGRFGKQVAVLHSGLSNGERYDEWRRIKRGEAKVVVGA 375

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            +     +    + L+I+DE+H    +Q
Sbjct: 376 RSAVFAPLD--NVGLIIMDEEHESSYKQ 401


>gi|115699930|ref|XP_001199247.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115978412|ref|XP_001188400.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 561

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 144/353 (40%), Gaps = 56/353 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA-MAAAVEAGGQ------- 323
           +PT  Q SAI  IL+    KN +      + GSGKTL  L+  M   VE   Q       
Sbjct: 169 TPTSIQLSAIPVILRG---KNTLC---AAETGSGKTLTYLLPLMQRLVEESKQTDNFTAE 222

Query: 324 -----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                 V++ P+G L  Q +E  K    +  + V+ I G        K+LE+       I
Sbjct: 223 PGLPRGVVLVPVGELVHQVWEVAKVLADSAGLSVQYIDGET----SLKSLEKRLSLSTDI 278

Query: 379 IIGTHALFQDSIQ--YYKLILV---IVDEQHRF----GVQQRLKLTQ----------KAT 419
           II T     ++++  Y  L  V   ++DE         +QQ LK+ +          K T
Sbjct: 279 IISTPGPIINAVRQGYGSLDCVSHIVIDESDTMLDDSFIQQTLKILKRVNVGEGKACKVT 338

Query: 420 AP--HVLLMTATPIPR--TLVLTSLGDIDISKITEKPAGRKPIKTV---IIPINRIDEVI 472
           AP    L M    +PR  T +L  +   +  ++   P   + +  V    + ++  D+ +
Sbjct: 339 APGEAQLTMVGATMPRKATNILAEIIPPENLEVISTPHVHRIMPHVHQKFLRLHSEDKAL 398

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           + L++V  E K+      ++      N  S  +    +          +H +M    +  
Sbjct: 399 KILELVKREQKR------RVPTMVFCNMASTCDWLAHILTENGIPALRLHSKMGGKSRSG 452

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           VM++FK+G   +L+ + +   G+D V    ++  +   F    +H+  GRVGR
Sbjct: 453 VMEAFKSGEAHILVCSDIASRGVDTVQVQHVVNFDFPPFMSDYIHRA-GRVGR 504


>gi|226823309|ref|NP_001152847.1| eukaryotic initiation factor 4A-I isoform 2 [Mus musculus]
 gi|74151289|dbj|BAE38776.1| unnamed protein product [Mus musculus]
          Length = 364

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|62858607|ref|NP_001016345.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 [Xenopus (Silurana)
           tropicalis]
 gi|89266955|emb|CAJ81385.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 [Xenopus (Silurana)
           tropicalis]
          Length = 479

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 148/352 (42%), Gaps = 73/352 (20%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+K QE+A+  +L D  Q      I Q   G+GKT   ++AM + V+A     Q + ++P
Sbjct: 116 PSKIQENALPMMLADPPQN----LIAQSQSGTGKTAAFVLAMLSRVDAKKTYPQCMCLSP 171

Query: 330 IGILAQQH---YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA Q     E + K+    ++I  +  GN P         +    +A I+IGT    
Sbjct: 172 TFELALQTGKVVEEMGKFCNGIKVIYAV-RGNRPG--------KGTQIEAQIVIGTPGTV 222

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQR-LKLTQKATAPHVLLMTATPIPRT----LVLTSLG 441
            D    +KL L+ V     F + +  + +  +  + H + +  + +P+T    L   + G
Sbjct: 223 LDWC--FKLRLINVKNISVFVLDEADVMINVQGHSDHSVRVKRS-MPKTCQMLLFSATFG 279

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           D  +    E+          I+P   I + +++ ++ L   ++ Y  C    E KE  + 
Sbjct: 280 D-SVWAFAER----------IVPDPNIIK-LKKEELTLDNIQQFYDKC----ENKEQKYS 323

Query: 502 SVVERF------------------NSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           ++   +                  N L  H       +A++ G +S  D+  ++  F+ G
Sbjct: 324 ALCNMYGIITIAQAIVFCQTRKIANWLSRHMLEDGHQVALLSGELSVCDRAEMIQRFREG 383

Query: 541 TCKLLIATTVIEVGIDVVDASIII-------IENAEHFGLAQLHQLRGRVGR 585
             K+L+ T V   GIDV   SI++       ++ +  F    LH++ GR GR
Sbjct: 384 KDKVLVTTNVCARGIDVEQVSIVVNFDLPVNVDGSVDFE-TYLHRI-GRTGR 433


>gi|229524656|ref|ZP_04414061.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae bv. albensis VL426]
 gi|254225409|ref|ZP_04919020.1| primosomal protein N` [Vibrio cholerae V51]
 gi|125622043|gb|EAZ50366.1| primosomal protein N` [Vibrio cholerae V51]
 gi|229338237|gb|EEO03254.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae bv. albensis VL426]
          Length = 734

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    SQ+     +L+G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 199 PKLNQEQAIA-IAAVNSQQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 258 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 312 FAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALTG 371

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 372 KYHHLQLTQRAGNALPTRN 390


>gi|294500985|ref|YP_003564685.1| primosomal protein N' [Bacillus megaterium QM B1551]
 gi|294350922|gb|ADE71251.1| primosomal protein N' [Bacillus megaterium QM B1551]
          Length = 804

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q  AI  IL D+ +    + ++ G  GSGKT V L ++   ++ G +A+++ P
Sbjct: 264 PFQLTDEQAEAIAPILHDIEENLHDVFLMYGVTGSGKTEVYLQSIDQVLKKGKEAIMLVP 323

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQD 388
              L  Q    +K++ +     V ++   +    +     +I   +  +++G   A+F  
Sbjct: 324 EISLTPQ---MVKRFKERFGSKVAVLHSGLSTGEKYDEWRKIQRKEVSVVVGARSAVFAP 380

Query: 389 SIQYYKLILVIVDEQHRFGVQQ 410
              +  L L+I+DE+H    +Q
Sbjct: 381 ---FENLGLLIIDEEHETSYKQ 399


>gi|212633368|ref|YP_002309893.1| Primosomal protein n [Shewanella piezotolerans WP3]
 gi|212554852|gb|ACJ27306.1| Primosomal protein n [Shewanella piezotolerans WP3]
          Length = 731

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 27/162 (16%)

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNT 348
           Q N    +L+G  GSGKT V L  +   ++ G QA+++ P IG+  Q    F +++    
Sbjct: 216 QSNYHCTLLEGVTGSGKTEVYLALLETILKQGKQALVLVPEIGLTPQTINRFRRRFNVKV 275

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            +I   +T N     R  A      G+A IIIGT +     + +  +I  I+DE+H    
Sbjct: 276 AVIHSGLTDN----QRLDAWRHAKTGEAAIIIGTRSALFTPMAHPGVI--ILDEEHDSSF 329

Query: 409 QQRLKLTQKATAPH---------------VLLMTATPIPRTL 435
           +Q     Q+    H               VLL TATP   TL
Sbjct: 330 KQ-----QEGVGYHARDLAVMRGHLEDIPVLLGTATPSLETL 366


>gi|183979315|dbj|BAG30754.1| DEAD box polypeptide 5 [Papilio xuthus]
          Length = 539

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 139/342 (40%), Gaps = 49/342 (14%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +    +   + +   
Sbjct: 153 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVACDFGNASYVRNT 212

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF-- 406
            + G  P+  + + LER       I+I T       L + +    +   +++DE  R   
Sbjct: 213 CVFGGAPKREQARDLER----GVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 268

Query: 407 -GVQQRL-KLTQKATAPHVLLMTATPIPR---TLVLTSLGD---IDISKITEKPAGRKPI 458
            G + ++ K+ ++       LM +   P+    L    LGD   I+I  + +  A    +
Sbjct: 269 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYLQINIGSL-QLSANHNIL 327

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV--------VERFNSL 510
           +  I+ + +  E   +L V+L E          I + +E   +++        VE     
Sbjct: 328 Q--IVDVCQEHEKENKLNVLLQE----------IGQSQEPGAKTIIFVETKRKVENITRN 375

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
              F      +HG  +  +++ V+  FK G   +L+AT V   G+DV     +I  +  +
Sbjct: 376 IRRFGWPAVCMHGDKTQQERDDVLYQFKQGRASILVATDVAARGLDVDGIKYVINFDYPN 435

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
                +H++ GR GR +   +    + P  S+ +   ++VL+
Sbjct: 436 SSEDYIHRI-GRTGRSKSKGTSYAFFTPSNSRQAKDLVNVLQ 476


>gi|149053067|gb|EDM04884.1| eukaryotic translation initiation factor 4A1, isoform CRA_a [Rattus
           norvegicus]
          Length = 393

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
          Length = 525

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/354 (19%), Positives = 145/354 (40%), Gaps = 60/354 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGG-QA 324
           +P+  Q  AI  +LQ    K+ M        G+GKT      ++ L++     +AG  +A
Sbjct: 34  TPSPIQAQAIPAVLQG---KDVMA---AAQTGTGKTAGFTLPMLELLSKGNRAQAGQVRA 87

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +N  +   +I G +P   +   + ++ HG   +++ T  
Sbjct: 88  LVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQ---IAKLRHG-VDVLVATPG 143

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 144 RLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRK-------ILAILPKQRQNLMFS 196

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
               D  +   K     P++  + P N     +++            W+CP  + +K   
Sbjct: 197 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQ------------WVCPVDKSQKSAL 244

Query: 497 ------ESNFRSVV---------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 +++++ V+          R     E      A IHG  S   +   +  FKNG 
Sbjct: 245 LIQLIKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQ 304

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            ++L+AT +   G+D+     ++  +  +     +H++ GR GR       + L
Sbjct: 305 ARVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGQAVSL 357


>gi|78048143|ref|YP_364318.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036573|emb|CAJ24264.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 458

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 123/292 (42%), Gaps = 44/292 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + ++K      N ++
Sbjct: 43  IAQAPTGSGKTAAFGLGLLQKLDPAVTRAQALVLCPTRELADQVGKQLRKLATGIPNMKL 102

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +V  +TG MP   +  +LE  AH    +++GT    Q+  +   L L     +++DE  R
Sbjct: 103 VV--LTGGMPLGPQLASLE--AH-DPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADR 157

Query: 406 F---GVQQRLKLTQKATAPH--VLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKP 457
               G ++ ++        H   LL +AT  P   RTL    L              ++P
Sbjct: 158 MLDMGFEEPIREIASRCDKHRQSLLFSAT-FPDSIRTLARELL--------------KEP 202

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHE 512
           ++  +   +   E+ ++   V    ++       +    ES     N R  V+      +
Sbjct: 203 VEITVEGADSAPEIDQQFFEVDPTYRQKAVAGLLLRFNPESSVVFCNTRKEVDEVAGSLQ 262

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            F  S   +HG M   D++ V+  F N +C +L+A+ V   G+DV D S ++
Sbjct: 263 EFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVV 314


>gi|282162799|ref|YP_003355184.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
 gi|282155113|dbj|BAI60201.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
          Length = 933

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 146/363 (40%), Gaps = 65/363 (17%)

Query: 263 QKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--E 319
           +K L ++ F+ PT++QE AI  I+      + +L I     G+GKT  A++     V   
Sbjct: 13  RKALASMGFTEPTETQEKAIPAIMSG----DDVLVI--APTGTGKTETAMLPALHGVLNG 66

Query: 320 AGGQA---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            GG+    + + P+  L +   + + ++++   + +E+  G+ P   RRK     A    
Sbjct: 67  EGGEGFKVLYITPLRALNRDMLKRLTQWSKELGVSIEVRHGDTPMHERRKQ----ALKPP 122

Query: 377 HIIIGTHALFQDSIQYYKL-------ILVIVDEQHRFGVQQR--------LKLTQKATAP 421
            ++I T    Q      ++         VIVDE H     +R         +L + A   
Sbjct: 123 DVLITTPETLQAIFMGLRMRNHLKTVKYVIVDEVHELASSKRGTQLSIALERLAKYADFQ 182

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            + L      P   V   LG +D           + ++ V + I +  +    +  V  E
Sbjct: 183 RIGLSATVGAPEE-VAHFLGGVD-----------RKVRIVQVSIEKTLDFHVTVPKVSEE 230

Query: 482 GKKAYW-------ICPQIEE------KKES-----NFRSVVERFNSLHEHFTSSIAIIHG 523
            KK          I  QI E      +  S     N R   E   +  +    SIA+ HG
Sbjct: 231 DKKLARKLLTDPDIASQIREMIALIHRNRSTLMFVNTRQSAEAIGARFKRLGESIAVHHG 290

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +S   +    D+FK+G    L+ T+ +E+GID+ D   +I    ++    ++ +L  RV
Sbjct: 291 SLSKEARIEAEDAFKDGRVPALVCTSSMELGIDIGDIDHVI----QYMSPREVCRLVQRV 346

Query: 584 GRG 586
           GR 
Sbjct: 347 GRA 349


>gi|229513598|ref|ZP_04403062.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae TMA 21]
 gi|229349475|gb|EEO14431.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae TMA 21]
          Length = 734

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    SQ+     +L+G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 199 PRLNQEQAIA-IAAVNSQQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 258 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 312 FAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALTG 371

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 372 KYHHLQLTQRAGNALPTRN 390


>gi|206576976|ref|YP_002241196.1| primosomal protein N' [Klebsiella pneumoniae 342]
 gi|206566034|gb|ACI07810.1| primosomal protein N' [Klebsiella pneumoniae 342]
          Length = 731

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ Q     VE++
Sbjct: 220 LLAGITGSGKTEVYLSVLENVLAQGRQALVMVPEIGLTPQT----IARFRQRFNAPVEVL 275

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 276 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKDLGVIVIDEEHDSSYKQQ 329


>gi|195484183|ref|XP_002090584.1| GE13195 [Drosophila yakuba]
 gi|194176685|gb|EDW90296.1| GE13195 [Drosophila yakuba]
          Length = 821

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 146/368 (39%), Gaps = 64/368 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA------------AVEA 320
           PT  Q  AI   LQ     NR + I   + GSGKTL  LI + +             V+ 
Sbjct: 416 PTPIQRQAIPIGLQ-----NRDI-IGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQ 469

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+IMAP   LAQQ  E   K+ Q   I   ++ G +    R +   R+  G   I+I
Sbjct: 470 GPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGL---SREEQGFRLRLG-CEIVI 525

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQ--------RLKLTQKATA 420
            T     D ++   L+L     +++DE  R         VQ+         LK   +   
Sbjct: 526 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAE 585

Query: 421 PHVLLM----TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               LM    T     +T++ T+     + ++  +   R+P    I  + +  E  E++ 
Sbjct: 586 DETKLMENFYTKKKYRQTVMFTATMPPAVERLA-RTYLRRPATVYIGSVGKPTERTEQIV 644

Query: 477 VVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            ++ E  K   +   +  K +       N +   +      E    +   +HG      +
Sbjct: 645 YMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQR 704

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVGR 585
           E  + + K+G   +L+AT V   GID+ D S++I     ++ +A+      H++ GR GR
Sbjct: 705 EYALAALKSGAKDILVATDVAGRGIDIKDVSLVI-----NYDMAKTIEDYTHRI-GRTGR 758

Query: 586 GEEISSCI 593
             +    I
Sbjct: 759 AGKTGCAI 766


>gi|81429147|ref|YP_396148.1| putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610790|emb|CAI55841.1| Putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 448

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 125/308 (40%), Gaps = 48/308 (15%)

Query: 302 VGSGKTLVALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GSGKTL   + +   +  G   Q +I+AP   L  Q  + I+ Y +     V+ ITG  
Sbjct: 42  TGSGKTLAFSLPLLEKIMPGEGLQVLILAPSQELVIQTRDVIQPYAKAIDCNVQAITG-- 99

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALF----QDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
            +A+ ++ +ER+      I+  T  L     Q  I+++ L  +I+DE           LT
Sbjct: 100 -KANVKRQIERLKTKPEIIVATTGRLLELSEQRKIKFHTLQAIIMDEADEL-------LT 151

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
               +    ++  +P    L   S    D     E   G  PI+T  I +  ID+     
Sbjct: 152 DSGLSETRHIVQESPADVQLGFFSATSTDTLTDLETWFG-VPIET--IDVRSIDK----- 203

Query: 476 KVVLSEGKKAYWICPQIEEKK---------ESNFRSVVERFNSLHE---------HFTSS 517
               + G   +   P    +K         + NFR +V  FN   +         H   +
Sbjct: 204 ----TGGDVLHAFIPTGNAQKVNVLRHLAHQKNFRGLV-IFNQSAQLLQAAQTLKHQKVT 258

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            A + G+    +++  +  F+ G  +LL+AT V   G+D+ D   +I  +  +  +  +H
Sbjct: 259 YAALSGQGRQTERQKALKDFREGKIQLLLATDVAGRGLDITDLPYVINFDVPNAKITYIH 318

Query: 578 QLRGRVGR 585
           +  GR GR
Sbjct: 319 RA-GRTGR 325


>gi|238794361|ref|ZP_04637972.1| Primosomal protein N' [Yersinia intermedia ATCC 29909]
 gi|238726262|gb|EEQ17805.1| Primosomal protein N' [Yersinia intermedia ATCC 29909]
          Length = 732

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENILAQGRQALVLVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R  +G+A I+IGT  ALF     + +L ++I+DE+H    +Q+
Sbjct: 277 HSGLNDSERLSVWLRARNGEAAIVIGTRSALF---TPFSRLGVIIIDEEHDSSYKQQ 330


>gi|312172469|emb|CBX80726.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora ATCC BAA-2158]
          Length = 459

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 134/334 (40%), Gaps = 65/334 (19%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIV 352
           Q   GSGKT    + +   V+A     QA+++ P   LA Q       + ++T N +I+ 
Sbjct: 46  QAKTGSGKTAAFGLGVMHRVDASQYVTQALVLCPTRELADQVTKELRRLARFTSNIKILT 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G  P   +R +L    H   HI++GT     D +Q   L L     +++DE  R  
Sbjct: 106 --LCGGQPVGAQRDSL---LHA-PHIVVGTPGRILDHLQRETLKLDAINTLVLDEADRML 159

Query: 407 --------------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DISKITE- 450
                           Q R  L   AT P  +   +  I R  +    GD+ D+  I + 
Sbjct: 160 EMGFREDIDAIISHSPQTRQTLLFSATWPQAIAQISQSIQRNPLTIETGDVSDLPAIEQT 219

Query: 451 --KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVER 506
             + A R+ +  +I               +LSE + +  +  C         N +   + 
Sbjct: 220 FYEAASREKLTALI--------------GLLSERQPSSCVVFC---------NTKRECDD 256

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                +    S   +HG +   +++ ++  F NG+C++L+AT V   G+D+   ++++  
Sbjct: 257 IAYALDKAQISAQPLHGDLEQRERDQMLIRFANGSCRVLVATDVAARGLDIKALAMVVNY 316

Query: 567 NAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPP 599
                    +H++ GR  R G+E   C + +  P
Sbjct: 317 QLSFDPEVHVHRI-GRTARAGQE--GCAVSFVAP 347


>gi|288937832|ref|YP_003441891.1| primosomal protein N' [Klebsiella variicola At-22]
 gi|288892541|gb|ADC60859.1| primosomal protein N' [Klebsiella variicola At-22]
          Length = 731

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ Q     VE++
Sbjct: 220 LLAGITGSGKTEVYLSVLENVLAQGRQALVMVPEIGLTPQT----IARFRQRFNAPVEVL 275

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 276 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKDLGVIVIDEEHDSSYKQQ 329


>gi|219113561|ref|XP_002186364.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583214|gb|ACI65834.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 370

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 144/349 (41%), Gaps = 74/349 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  Q+ AI+ I++          I Q   G+GKT V  ++    ++      Q +I++P
Sbjct: 19  PSAIQQRAIRPIIRGRDV------IAQSQSGTGKTAVFSVSSLQLLQENSRECQVLILSP 72

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  + ++       +      G         ALE+   G   II GT     D 
Sbjct: 73  TRELAEQTQKVVQALGDFMNVHCHACIGGKSLGQDLNALEK---GGIQIISGTPGRVFDL 129

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTS 439
           I+   L        IL   DE    G ++++    +    +  V+LM+AT     L +T 
Sbjct: 130 IRRNALSPNHLKAMILDEADEMLNRGFKEQIYDIYRFLPASTQVVLMSATLPASVLDMT- 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                      +     PI+ ++    R DE+         EG + ++I     EK+E  
Sbjct: 189 -----------RKFMNDPIRILV----RRDELT-------LEGIRQFFINV---EKEEWK 223

Query: 500 FRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMDS 536
           F ++ + +++L                        ++FT  ++ +HG M    +++VM+ 
Sbjct: 224 FDTLCDLYDTLTITQAVIFCNTKQKVDWLAGKMKDKNFT--VSAMHGDMDQGARDAVMEE 281

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           F++G+ ++LIAT +   GIDV   S++I  +        +H++ GR GR
Sbjct: 282 FRSGSSRVLIATDLWGRGIDVQQVSLVICYDLPTNRELYIHRI-GRSGR 329


>gi|161503259|ref|YP_001570371.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864606|gb|ABX21229.1| hypothetical protein SARI_01328 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 457

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 134/325 (41%), Gaps = 54/325 (16%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVSLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI------ 399
              + G  P   +R +L+       HII+ T     D +Q   +      ILV+      
Sbjct: 105 T--LCGGQPFGVQRDSLQH----APHIIVATPGRLLDHLQKRTVSLDALHILVMDEADRM 158

Query: 400 --------VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                   +DE  RF    R  L   AT P  +   +  + +  +      IDI  +   
Sbjct: 159 LDMGFSDAIDEVIRFAPATRQTLLFSATWPETIAAISGRVQQQPM-----HIDIDTVDAL 213

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           PA  +             E I  L+ +LS+ + A  +   +    + + ++V +  N+  
Sbjct: 214 PAIEQQFFE-----TSAQEKISLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALNAAG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+    +++       
Sbjct: 266 Q---SALAL-HGDLEQRDRDQTLVRFTNGSARILVATDVAARGLDIKSLELVVNYELAWD 321

Query: 572 GLAQLHQLRGRVGR----GEEISSC 592
             A +H++ GR  R    G  IS C
Sbjct: 322 PEAHVHRI-GRTARAGSSGLAISFC 345


>gi|148977343|ref|ZP_01813957.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
 gi|145963456|gb|EDK28720.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
          Length = 646

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 138/349 (39%), Gaps = 53/349 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +       QA+IMA
Sbjct: 28  SPTPIQAAAIPLLLEGRDA------LGKAQTGTGKTAAFSLPLLNKINLNQHKPQAIIMA 81

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   ++ + +  I I G      + +AL R     AHI++GT    +
Sbjct: 82  PTRELAIQVAAEIKNLGRDIKGLKVIEIYGGASIVDQMRALSR----GAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRF---GVQQRLK----------LTQKATAPHVLLMTAT--PIP 432
           D +   +L L   DE H F      + LK          L Q   +   +L +AT  P+ 
Sbjct: 138 DLLTRDRLHL---DEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPMV 194

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLS-EGKKAYWICP 490
           +T+V   L              R P K  +   N  +D+V +   VV   E  +A     
Sbjct: 195 KTIVDRYL--------------RNPAKVDVAGTNHTVDKVAQNFWVVKGVEKDEAMSRLL 240

Query: 491 QIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + EE   S      R   ER            A +HG +    +E  +D  K G   +L+
Sbjct: 241 ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           AT V+  G+DV   + +   +      + +H++ GR GR       ILL
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILL 348


>gi|30023480|ref|NP_835111.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|229130700|ref|ZP_04259653.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-Cer4]
 gi|29899041|gb|AAP12312.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|228652717|gb|EEL08602.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-Cer4]
          Length = 481

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 134/326 (41%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID-ISKITEKPAGRKPIKTVI 462
             F  Q    + +  T    +L +AT +P         D++ +S+          IK   
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPE--------DVEKLSRTYMNSPTHIEIKAAG 211

Query: 463 IPINRID----EVIERLK------VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           I  ++I+    EVIE  K      V   E   +  I  + +E  +  +R + +R N   +
Sbjct: 212 ITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-KRANYPCD 270

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                   IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +     
Sbjct: 271 K-------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEK 323

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
            + +H+  GR GR       I    P
Sbjct: 324 ESYVHRT-GRTGRAGNSGKAITFITP 348


>gi|18313289|ref|NP_559956.1| ATP-dependent helicase [Pyrobaculum aerophilum str. IM2]
 gi|18160812|gb|AAL64138.1| ATP-dependent helicase [Pyrobaculum aerophilum str. IM2]
          Length = 928

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 148/355 (41%), Gaps = 67/355 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------EAGGQAVI 326
           PT+ Q+ AI +IL      N +L I     GSGKT  AL+ + + +        G   + 
Sbjct: 22  PTEPQKRAIPEILSG----NNVLII--APTGSGKTEAALLPILSKMLERDIDRPGIYVLY 75

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P+  L +   + IK + +     V++  G+  +A R    +R +    HI+I T  + 
Sbjct: 76  ITPLRALNRDLLDRIKWWGERLGFRVDVRHGDTDKADR----QRQSKTPPHILITTPEML 131

Query: 387 QDSIQYYKLI-------LVIVDEQHRFGVQQR---LKLTQKATAPHV------LLMTATP 430
           Q  +   +L+         I+DE H     +R   L L  +    HV      + ++AT 
Sbjct: 132 QAIMTGKRLLTHLKELQWAIIDEVHELAEDKRGVQLSLALERLRYHVGRDFQIVGLSATV 191

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEV-----IERLKVVLSEG 482
                V   L  +D           +P K V++ I R   +D V      E  K+  + G
Sbjct: 192 GSPVEVAKFLMGVD-----------RPFKIVMVNITRQMKLDVVRPKPTAEDYKLAETSG 240

Query: 483 ------KKAYWICPQIEEKKES----NFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDK 530
                  +   I   +EE + +    N RS+ E       +    I  A+ H  +S + +
Sbjct: 241 LFPDVIARLKLIKKLVEENRSTLIFVNTRSMAELLGFRLTYLFPDIPAAVHHSSLSKMVR 300

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            SV +  K G  K ++AT+ +E+GID+    ++I   + H    Q+ +L  RVGR
Sbjct: 301 VSVEERLKRGELKAVVATSSLELGIDIGHVDLVIQYISPH----QVTRLLQRVGR 351


>gi|15645015|ref|NP_207185.1| primosome assembly protein PriA [Helicobacter pylori 26695]
 gi|3183133|sp|O25149|PRIA_HELPY RecName: Full=Primosomal protein N'; AltName: Full=ATP-dependent
           helicase priA; AltName: Full=Replication factor Y
 gi|2313488|gb|AAD07452.1| primosomal protein replication factor (priA) [Helicobacter pylori
           26695]
          Length = 619

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + A+A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHSA-SLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      + + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKRVFKEN----LGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 219 LKELGLIIVDEEHDFS 234


>gi|330923164|ref|XP_003300130.1| hypothetical protein PTT_11286 [Pyrenophora teres f. teres 0-1]
 gi|311325925|gb|EFQ91808.1| hypothetical protein PTT_11286 [Pyrenophora teres f. teres 0-1]
          Length = 483

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 72/347 (20%), Positives = 137/347 (39%), Gaps = 51/347 (14%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +     + A        G   +I+AP   LA Q  + I K+ ++++I 
Sbjct: 105 AETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIR 164

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G +P+  + + L R       + I T     D ++  K  L     +++DE  R 
Sbjct: 165 NTCVYGGVPKGPQIRDLAR----GVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRM 220

Query: 406 ----FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KI 448
               F  Q R  + Q           AT P  +   A    +  +  ++G +D+S   +I
Sbjct: 221 LDMGFEPQIRKIIGQIRPDRQTCMWSATWPKEVRQLAADYQKDWIQVNIGSMDLSANHRI 280

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            +       I  V     + D + + L+ ++S+      I         +  + V +   
Sbjct: 281 QQ-------IVEVCTEFEKRDRMAKHLETIMSDKDNKILIF--------TGTKRVADEIT 325

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       IHG     +++ V++ FK G   +++AT V   GIDV + + +   + 
Sbjct: 326 RFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDY 385

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
            +     +H++ GR GR     + I L+    SK +   + +L  ++
Sbjct: 386 PNNSEDYVHRI-GRTGRAGANGTAITLFTTDNSKQARDLVQILTESK 431


>gi|228474931|ref|ZP_04059660.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
 gi|314935968|ref|ZP_07843318.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
 gi|228271163|gb|EEK12543.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
 gi|313655974|gb|EFS19716.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
          Length = 503

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 138/335 (41%), Gaps = 68/335 (20%)

Query: 299 QGDVGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           Q   G+GKT    I +   V  ++G QA+I+AP   LA Q  E ++++++   I V  + 
Sbjct: 45  QAQTGTGKTGAFGIPLIEKVVGKSGVQALILAPTRELAMQVAEQLREFSRGQNIQVVTVF 104

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGV 408
           G MP   + KAL+R       I++GT     D +          + LIL   DE    G 
Sbjct: 105 GGMPIDRQIKALKR----GPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGF 160

Query: 409 QQRLKLTQK---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
              ++       A     +L +AT +P                       K I+T++   
Sbjct: 161 IDDMRFIMDKIPAEQRQTMLFSAT-MP-----------------------KAIQTLVQQF 196

Query: 466 NRIDEVIERLKVVLSEGK--KAYWICPQIEE-KKESNFRSVVE--------RFNSLHEHF 514
            +  ++++ +   +S+ +  + Y I  ++E+    +NF  V +        R     +  
Sbjct: 197 MKSPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDEL 256

Query: 515 TSSIAI-------IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII---- 563
           TS++         +HG ++   +  V+  FKN    +L+AT V   G+D+   S +    
Sbjct: 257 TSALLTKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFD 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           I ++ E +     H++ GR GR  +    +   +P
Sbjct: 317 IPQDTESY----THRI-GRTGRAGKEGIAVTFVNP 346


>gi|212634102|ref|YP_002310627.1| DEAD box family ATP-dependent RNA helicase [Shewanella
           piezotolerans WP3]
 gi|212555586|gb|ACJ28040.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
           piezotolerans WP3]
          Length = 422

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 140/349 (40%), Gaps = 49/349 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT-------LVALIAMAAAVEAGG-QA 324
           PT  Q +AI  IL   S K+ M        G+GKT       L  L   +A  E    +A
Sbjct: 37  PTPIQTAAIPVIL---SGKDLMA---SAQTGTGKTAAFTLPILQKLAMQSAGKETDSIRA 90

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + + +Y  NT +   +I G +    +  +L   A G   I++ T  
Sbjct: 91  LILVPTRELAVQVNKSVTEYGVNTALKSMVIYGGVSIDAQASSL---AAG-VDIVVATPG 146

Query: 385 LFQDSIQYYKLILV-----IVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRT 434
              D ++   L L+     + DE  R    G    +   L Q  T    LL +AT     
Sbjct: 147 RLLDHLRRGSLSLMAIDTLVFDEADRMLDMGFMDEINAILKQLPTERQTLLFSAT----- 201

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
                  D  I ++++K    KP++  +   N   + +E++   +   +KA  I   I +
Sbjct: 202 -----FSDA-IYRLSKKLLS-KPVRIEVDKANSAADSVEQIVYAVDSDRKAALISHLINK 254

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAI-------IHGRMSDIDKESVMDSFKNGTCKLLIA 547
                   +  R     +  TS +          HG +S   +E V++ FK G  K L+A
Sbjct: 255 YHWQQVL-IFSRKKQTADTITSKLVAAGVAAKAFHGDLSQGAREQVLNDFKAGNIKALVA 313

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           T V   G+D+V+ + ++           +H++ GR GR       I LY
Sbjct: 314 TDVAARGLDIVELNYVVNYEIPFVAEDYIHRI-GRTGRAGNSGKAITLY 361


>gi|148228442|ref|NP_001082679.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Xenopus laevis]
 gi|51704021|gb|AAH80992.1| LOC398649 protein [Xenopus laevis]
          Length = 610

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 131/345 (37%), Gaps = 57/345 (16%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     +          G   +++AP   LAQQ  +    Y + +++   
Sbjct: 128 TGSGKTLAYLLPAMVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKTSRLKST 187

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + LER       I I T     D ++  K  L     +++DE  R   
Sbjct: 188 CIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLD 243

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KITE 450
            G +             R  L   AT P  +   A    R     ++G++++S    I +
Sbjct: 244 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYSQINIGNLELSANHNILQ 303

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
                  I  V     +  ++I+ ++ +++E           +E K   F     R + L
Sbjct: 304 -------IVDVCQESEKDHKLIQLMEEIMAE-----------KENKTIIFVETKRRCDEL 345

Query: 511 HEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                        IHG  S  +++ V+  F+ G   +LIAT V   G+DV D   +I  +
Sbjct: 346 TRRMRRDGWPAMCIHGDKSQQERDWVLCEFRTGKAPILIATDVASRGLDVEDIKFVINYD 405

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 406 YPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELVKVLE 449


>gi|70606120|ref|YP_254990.1| DEAD box helicase [Sulfolobus acidocaldarius DSM 639]
 gi|68566768|gb|AAY79697.1| DEAD box helicase [Sulfolobus acidocaldarius DSM 639]
          Length = 746

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 139/343 (40%), Gaps = 46/343 (13%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           K QE A   I    S  N ++ I+ G  G+GKT   LI +      G ++V++ P   LA
Sbjct: 60  KFQEEAYNKI----SHGNNVM-IVSG-TGTGKTEAFLIPLLDLALKGERSVLVYPTKALA 113

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT----HALFQDSI 390
           +   E +++      + + +  G+ P+  R+    R+     HI+I      H     S 
Sbjct: 114 RDQLERVRRLASPLGVEMGVFDGDTPEKERK----RLYENPPHILITNPDMIHIGLPLSY 169

Query: 391 QYYKLILV----IVDEQHRFG---------VQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           ++ +LI      + DE H +          +  RL+   + T  HV+  +AT      + 
Sbjct: 170 RFRRLIRTADHFVFDEVHSYDGVLGSHIRMISDRLR---ELTDYHVIGSSATIDASPYLF 226

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
             L  +    I   P  +      ++ I           +     K+ Y +   ++ ++ 
Sbjct: 227 EELFGVKGEIIYGSPRRKGVAIHALLNIGSASRWTLSAYLTAFLVKEGYKVLTFVDSQQM 286

Query: 498 SNF-RSVVERFNSLHEHFTSSIAIIHGRMSDIDKES---VMDSFKNGTCKLLIATTVIEV 553
           +     +  RF   +         IH   + I+KE    V +S K+G  K +IAT  +E+
Sbjct: 287 AELIAKITARFGEEN---------IHVHRAGINKEDRLKVEESIKSGKIKGVIATPTLEL 337

Query: 554 GIDVVDASIIII-ENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           GID+ D  ++I+ EN  ++   +  Q  GR GR  +I     L
Sbjct: 338 GIDIGDLDVVIMAENPPNY--TKYLQRAGRAGRRSKIGYIFTL 378


>gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 526

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/354 (19%), Positives = 145/354 (40%), Gaps = 60/354 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGG-QA 324
           +P+  Q  AI  +LQ    K+ M        G+GKT      ++ L++     +AG  +A
Sbjct: 34  TPSPIQAQAIPAVLQG---KDVMA---AAQTGTGKTAGFTLPMLELLSKGNRAQAGQVRA 87

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +N  +   +I G +P   +   + ++ HG   +++ T  
Sbjct: 88  LVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQ---IAKLRHG-VDVLVATPG 143

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 144 RLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRK-------ILAILPKQRQNLMFS 196

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
               D  +   K     P++  + P N     +++            W+CP  + +K   
Sbjct: 197 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQ------------WVCPVDKSQKSAL 244

Query: 497 ------ESNFRSVV---------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 +++++ V+          R     E      A IHG  S   +   +  FKNG 
Sbjct: 245 LIQLIKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQ 304

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            ++L+AT +   G+D+     ++  +  +     +H++ GR GR       + L
Sbjct: 305 ARVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGQAVSL 357


>gi|319653444|ref|ZP_08007544.1| hypothetical protein HMPREF1013_04161 [Bacillus sp. 2_A_57_CT2]
 gi|317394928|gb|EFV75666.1| hypothetical protein HMPREF1013_04161 [Bacillus sp. 2_A_57_CT2]
          Length = 374

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 136/316 (43%), Gaps = 52/316 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---IMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I +   G+GKTL  L+ +   ++   QAV   I+A    L  Q    I+K+ + + I   
Sbjct: 43  IAESPTGTGKTLAYLLPVLENIDPDKQAVQAVILASSQELVMQILSEIQKWAEGSGIKAA 102

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDE------ 402
              G    A+ ++ LE++     HI +GT       + Q  ++ +++  V++DE      
Sbjct: 103 SFIGG---ANVKRQLEKLKK-HPHIALGTPGRVLELIKQKKLKMHEVKTVVLDEGDQLLV 158

Query: 403 -QHRFGVQQRLKLTQKATAPHVLLMTAT--PIPRTLVLTSLGDIDISKI----TEKPAGR 455
            +H   VQ  +K T K     VLL +AT  P+   L      D ++ ++    T + AG 
Sbjct: 159 PEHAQTVQNIVKSTLKER--QVLLFSATLPPVVEQLAKELTADAEVIRVEKDETIQAAGV 216

Query: 456 KPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             I  V    ++I   E I RL     E  KA      I      N   + E+ +   ++
Sbjct: 217 DHIYFVAEARDKIKMLEKISRL-----EDIKALVFVKDI-----GNLTVMAEKLD--FKN 264

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF-- 571
            +SS   +H  +S  D++  + +F+ G   +LIAT V   G+D+   + ++     HF  
Sbjct: 265 ISSST--LHSDLSKFDRQKAIKNFRTGKTNMLIATDVAARGLDIKGVTHVV-----HFDF 317

Query: 572 --GLAQLHQLRGRVGR 585
              + Q     GR GR
Sbjct: 318 PKDMNQYVHRSGRTGR 333


>gi|300692366|ref|YP_003753361.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
           solanacearum PSI07]
 gi|299079426|emb|CBJ52099.2| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
           solanacearum PSI07]
          Length = 471

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 136/309 (44%), Gaps = 32/309 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++A     QA+++ P   LA Q  + I++  +  + + V
Sbjct: 55  IAQAKTGSGKTAAFSLALLARLDARRFDVQAMVLCPTRELADQVTQEIRRLARAEENVKV 114

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G  P   +  +LE   HG AH+++GT     D ++   L L     +++DE  R  
Sbjct: 115 LTLCGGTPMRPQTASLE---HG-AHVVVGTPGRIMDHLERGNLALGALKTLVLDEADRML 170

Query: 407 --GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIK 459
             G    +    +   P    LL +AT  P  +   S   L +    K+ E+    K I+
Sbjct: 171 DMGFFDDIATVVRQCPPERQTLLFSAT-YPDGIAKLSRQILRNPKEVKLEERHDDSK-IR 228

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
                +   DE +  + ++L   +    +     +++  N   V+ R    H     ++A
Sbjct: 229 QRFYEVTD-DERLHAVGLLLKHYRPVSTLAFCNTKQQCRNLLDVL-RAQGFH-----ALA 281

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++
Sbjct: 282 L-HGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI 340

Query: 580 RGRVGRGEE 588
            GR GR ++
Sbjct: 341 -GRTGRADQ 348


>gi|149511215|ref|XP_001519332.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
           [Ornithorhynchus anatinus]
          Length = 790

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/344 (19%), Positives = 131/344 (38%), Gaps = 69/344 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           + Q   G+GKT    I +   ++   +          +++ P   LA Q  +  K  T+ 
Sbjct: 223 VAQARTGTGKTFSFAIPLTEKLQRKREEQKRGYPPKVLVLTPTRELANQVAKDFKDITRT 282

Query: 348 TQIIVEIITGNMPQAHR----RKALERIAHGQAHIIIGTHALFQDSIQY--------YKL 395
             + V    G  P   +    RK ++        I++GT    +D ++         Y +
Sbjct: 283 --LTVACFYGGTPYNGQIDLIRKGID--------ILVGTPGRIKDHLESGRLDLTKLYHV 332

Query: 396 ILVIVDEQHRFGVQQRLKL-------TQKATAPHVLLMTAT------PIPRTLVLTSLGD 442
           +L  VD+    G  + ++         +    P  LL +AT       + +  +      
Sbjct: 333 VLDEVDQMLDMGFAEDVEKIISGAYNRESEDNPQTLLFSATCPQWVYKVAKKYMKAKYEQ 392

Query: 443 ID-ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           +D I K+T+K A                  +E L +   E ++A  I   I+    +  R
Sbjct: 393 VDLIGKLTQKAA----------------TTVEHLAIQCRENQRAAVIGDVIQVYSGNQGR 436

Query: 502 SVV-------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           ++V           +L+ +       +HG ++   +E  +  F+NG  K+L+AT V   G
Sbjct: 437 AIVFCETKKDATEMALNSNIKQEAQALHGDIAQSQREITLKGFRNGVFKVLVATNVAARG 496

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +D+ +  ++I  +      + +H+  GR GR      CI  + P
Sbjct: 497 LDIPEVDLVIQSSPPKDVESYIHR-SGRTGRAGRTGICICFFQP 539


>gi|153831607|ref|ZP_01984274.1| ATP-dependent rna helicase, dead box family [Vibrio harveyi HY01]
 gi|148872117|gb|EDL70934.1| ATP-dependent rna helicase, dead box family [Vibrio harveyi HY01]
          Length = 443

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 149/367 (40%), Gaps = 67/367 (18%)

Query: 302 VGSGKTLVALIAM-------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  ++ M        +      +AVI+AP   LA+Q Y  ++           +
Sbjct: 47  TGSGKTLAFVLPMLHKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLGGLTYDAAL 106

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---F 406
           I G      + KAL R        I+ T     D +++  L L     +++DE  R    
Sbjct: 107 ILGGENFNDQVKALRRYPK----FIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDL 162

Query: 407 GVQQRLKLTQKATAPH----VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           G    L+   KA A H     L+ +AT     L    + DI  S++   P      K + 
Sbjct: 163 GFAPELRRIHKA-AKHRRRQTLMFSAT-----LDHAEVNDI-ASEMLNAP------KRIA 209

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--------ESNFRSVV---------E 505
           I ++      E  K +  +    +++C  ++ K+        E+ +R V+         E
Sbjct: 210 IGVSN-----EEHKDITQK----FYLCDHLDHKEAILERVLEEAEYRQVIIFTATRDDTE 260

Query: 506 RF-NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           R  N L+E    ++A+  G ++   + ++M  F+    K+L+ T V   G+D+   + +I
Sbjct: 261 RLTNKLNEKKLKAVAL-SGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIATVTHVI 319

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
             +        +H++ GR GR       + L  P    +S+ R+      +  F +  ED
Sbjct: 320 NFDMPKHTEEYVHRV-GRTGRAGNKGDAVSLVGPK-DWDSFKRVETYLQQDLNFSVF-ED 376

Query: 625 LKQRKEG 631
           LK + +G
Sbjct: 377 LKGKFKG 383


>gi|38198643|ref|NP_938180.1| eukaryotic translation initiation factor 4A, isoform 1A [Danio
           rerio]
 gi|29294689|gb|AAH48899.1| Eukaryotic translation initiation factor 4A, isoform 1A [Danio
           rerio]
          Length = 406

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 128/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIDVELKATQAMVLAPTRELAQQIQKVVLALGDYMGATCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKLI-LVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S +Y K+  L   DE   
Sbjct: 133 ACIGG---TNVRNDVQKLQADVPHIVVGTPGRVFDMLNRRYLSPKYIKMFALDEADEMLS 189

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK AT   V+L++AT +P+          ++ ++T K   R P++   I
Sbjct: 190 RGFKDQIYEIFQKLATDTQVILLSAT-MPQ----------EVLEVTTKFM-RDPVR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      +K  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEKEEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSALHGDMEQKERDVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|317009676|gb|ADU80256.1| primosome assembly protein PriA [Helicobacter pylori India7]
          Length = 619

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + A+A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHSA-SLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      + + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKRVFKEN----LGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 219 LKELGLIIVDEEHDFS 234


>gi|312887813|ref|ZP_07747400.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311299632|gb|EFQ76714.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 433

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 139/353 (39%), Gaps = 48/353 (13%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQ--DMSQKNRMLRILQGDVGSGKTL---VALIAMAAA 317
           +K L N+  +     + A  ++ Q  DM        +L    GSGKTL   + ++++  +
Sbjct: 3   KKALENLNIAALNEMQHAALNVPQHADM--------VLLSPTGSGKTLGFLLPVLSLLDS 54

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
            +AG Q +++ P   LA Q  +  K     T   V    G       + +L +       
Sbjct: 55  GKAGVQVLVLVPSRELALQIEKVFK--AMGTGFKVNCCYGGHATRIEKNSLSQ----PPA 108

Query: 378 IIIGTHALFQ--------DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMT 427
           ++IGT             D+   + LIL   D+   FG Q+ +    +        +L +
Sbjct: 109 VLIGTPGRLAYHIRNESFDASTVHTLILDEFDKALEFGFQEDMAYIIRGLTGVKKRILTS 168

Query: 428 ATPIPRTLVLTSLGDI----DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           AT +      T++        +  +  KP  +  IK VI      D++     ++   G 
Sbjct: 169 ATKMDEIPAFTAVKHAVELNYLKDLVTKPDLK--IKAVIADAE--DKLSALFALICKIGD 224

Query: 484 KAYWI-CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           KA  + C         N R  V+R + L  +   S  + HG M   D+E  +  F+NG+ 
Sbjct: 225 KATLVFC---------NHREAVDRISELLSYMGLSHGVFHGGMEQEDREHALLKFRNGSN 275

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +LLI T +   G+D+ +   +I     H   A  H+  GR  R     +  LL
Sbjct: 276 RLLITTDLASRGLDIPEIECVIHYQLPHNEEAFTHR-NGRTARMHAKGTAYLL 327


>gi|256860908|gb|ACV32356.1| vasa [Scomber japonicus]
          Length = 643

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 75/382 (19%), Positives = 155/382 (40%), Gaps = 68/382 (17%)

Query: 258 EGKIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           E ++ + + +N+  S    PT  Q+  I  I    S    ++   Q   GSGKT   L+ 
Sbjct: 212 EAELCESLRKNVSKSGYVKPTPVQKHGIPII----SAGRDLMACAQ--TGSGKTAAFLLP 265

Query: 314 MAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           +   + A G            +A+I+AP   L  Q Y   +K+   T +   ++ G +  
Sbjct: 266 ILQQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVST 325

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
            H+ + +ER      +++ GT     D      +   KL  +++DE  R        +  
Sbjct: 326 GHQIRDIER----GCNVVCGTPGRLLDMIGRGKVGVSKLRYLVLDEADR--------MLD 373

Query: 417 KATAPHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK--------------PAGRK 456
               P +  +  +P +P     +TL+ ++    DI ++                      
Sbjct: 374 MGFEPDMRRLVGSPGMPSKEDRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACS 433

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            ++   I + +  +  + L ++ + G +   +   +E K++++F   +  F    +  T+
Sbjct: 434 DVEQTFIQVTKFSKREQLLDLLKTTGMERTMVF--VETKRQADF---IATFLCQEKVPTT 488

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           SI   HG     ++E  +  F++G C +++AT+V   G+D+ D   ++  +  +     +
Sbjct: 489 SI---HGDREQREREQALADFRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPNNIDEYV 545

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           H++ GR GR       +  Y P
Sbjct: 546 HRI-GRTGRCGNTGRAVSFYDP 566


>gi|208434963|ref|YP_002266629.1| primosomal protein replication factor [Helicobacter pylori G27]
 gi|208432892|gb|ACI27763.1| primosomal protein replication factor [Helicobacter pylori G27]
          Length = 580

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + A+A  +E    A+++ P I +
Sbjct: 73  SQTQTNALKEL-----QKHSA-SLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIAL 126

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      + + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 127 TPQMQQRLKRVFKEN----LGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRSALF---LP 179

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 180 LKELGLIIVDEEHDFS 195


>gi|126338208|ref|XP_001370190.1| PREDICTED: similar to initiation factor 4AII [Monodelphis
           domestica]
          Length = 620

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 287 IAQAQSGTGKTATFAISILQQLEIELKETQALVLAPTRELAQQIQKVILALGDYMGATCH 346

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 347 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 403

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK +T   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 404 RGFKDQIYEIFQKLSTNIQVVLLSAT-MP----------TDVLEVTKKFM-RDPIR---I 448

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 449 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHA 508

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 509 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 559


>gi|308800454|ref|XP_003075008.1| Ddx49 Ddx49-related DEAD box helicase superfamily II protein (IC)
           [Ostreococcus tauri]
 gi|119358858|emb|CAL52279.2| Ddx49 Ddx49-related DEAD box helicase superfamily II protein (IC)
           [Ostreococcus tauri]
          Length = 419

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 139/325 (42%), Gaps = 44/325 (13%)

Query: 264 KILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVE 319
           KIL+ + F SP+  Q + I  IL           I   + GSGKT    + ++ M +   
Sbjct: 15  KILKRVHFRSPSDVQSTCIPQILAGKDV------IGIANTGSGKTAAFALPIVDMLSRDP 68

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G  A+ ++P   LA Q  +    +   T +   +ITG      +  AL R    + +I+
Sbjct: 69  YGIFALCLSPTRELANQIADQFTVFGAGTGLNCMVITGGEDLIQQATALSR----RPNIV 124

Query: 380 IGTHA-LFQ------DSIQYY-KLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLM 426
           + T   LF+      +++QY+ KL  +I+DE  R     F  + +  ++        L+ 
Sbjct: 125 VATPGRLFEHFMHSSNTVQYFSKLKCLILDEADRLLDSSFAAELKYLMSNLPQQRQTLMF 184

Query: 427 TATPIPRTLVLTS-LGDIDI---SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +AT       L S LGD       K  +K A R       +P  RI +V   +K+V    
Sbjct: 185 SATITKSVTALQSMLGDAVFYYEDKSVKKTAVRCSQSYCFMP-ERIKDV-NLVKLVRE-- 240

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKN 539
                    +E K+   F + +++   L +  T+     + +H      ++ + +  FKN
Sbjct: 241 ------LALVEAKRTIIFTATIQKCELLSQMLTTLGIPSSSLHAAKKQKERLNSLGVFKN 294

Query: 540 GTCKLLIATTVIEVGIDVVDASIII 564
           GT ++L+AT V   G+D+    +I+
Sbjct: 295 GTVQILVATDVAARGLDLPSVDMIL 319


>gi|58039465|ref|YP_191429.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58001879|gb|AAW60773.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 432

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 141/322 (43%), Gaps = 51/322 (15%)

Query: 302 VGSGKT----LVALIAMAA----AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            G+GKT    L  L  +AA    A + G + +++AP   L  Q  +  + ++++  + V 
Sbjct: 53  TGTGKTASFALPLLHRLAATPRPAPKNGARVLVLAPTRELVSQIADGFESFSRHQPVRVT 112

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            I G + Q H+ KALE        II+       D I        Q   L+L   D+   
Sbjct: 113 TIFGGVSQVHQVKALEE----GVDIIVAAPGRLLDLIEQGLCDLSQLETLVLDEADQMLD 168

Query: 406 FGVQQRLKLTQKATAP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            G  + ++    AT P   H +L +AT +P++          I+ + E    R P K  I
Sbjct: 169 MGFAKPIERI-VATLPEDRHTVLFSAT-MPKS----------IAALVESLL-RNPAKVEI 215

Query: 463 IPINR-IDEVIERLKVVLSEGKKAYWIC----PQIEEKK----ESNFRSVVERFNSLHEH 513
            P +  +D + + +  + +  KKA  +     P I +      + N  + V  F  L E 
Sbjct: 216 APPSSTVDRIAQSVMFLNASDKKAALLAQLRTPGIGQAVVFTLQKNIANDVCTF--LTES 273

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             ++ A+ HG  S   +E  +++F+ G  ++L+AT +   GIDV   + +I  +      
Sbjct: 274 GITAEAL-HGNRSQGQRERALNAFREGDVQVLVATDIAARGIDVDTVTHVINHDLPSLPE 332

Query: 574 AQLHQL--RGRVGR-GEEISSC 592
           + +H++   GR GR G  I+ C
Sbjct: 333 SYVHRIGRTGRAGRSGFAITLC 354


>gi|68478729|ref|XP_716633.1| hypothetical protein CaO19.7392 [Candida albicans SC5314]
 gi|74656359|sp|Q5A4E2|DED1_CANAL RecName: Full=ATP-dependent RNA helicase DED1
 gi|46438305|gb|EAK97638.1| hypothetical protein CaO19.7392 [Candida albicans SC5314]
 gi|238881007|gb|EEQ44645.1| ATP-dependent RNA helicase ded1 [Candida albicans WO-1]
          Length = 672

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 120/301 (39%), Gaps = 53/301 (17%)

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++MAP   L  Q YE  KK++  + +   ++ G      + + ++R       +++ T  
Sbjct: 273 LVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDR----GCDLLVATPG 328

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRF-------------------GVQQRLKLTQKATA 420
             +D +   K+ L     +++DE  R                     V+ R  L   AT 
Sbjct: 329 RLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVEECDMPAVKDRQTLMFSATF 388

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDIS--KITEK--PAGRKPIKTVIIPINRIDEVIERLK 476
           P  + M A    +  V  S+G +  +   IT+K         K+VI+ +   +E    L 
Sbjct: 389 PRDIQMLARDFLKDYVFLSVGRVGSTSENITQKILYVEDDEKKSVILDLLSANE--NGLT 446

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           +V +E K                 R      + L++    + AI HG  S  ++E  + +
Sbjct: 447 IVFTETK-----------------RMADNLADYLYDQGFPATAI-HGDRSQYEREKALAA 488

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKNG   +L+AT V   G+D+ + S +I  +        +H++ GR GR   +      +
Sbjct: 489 FKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRI-GRTGRAGNVGIATAFF 547

Query: 597 H 597
           +
Sbjct: 548 N 548


>gi|328949667|ref|YP_004367002.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
           DSM 14884]
 gi|328449991|gb|AEB10892.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
           DSM 14884]
          Length = 517

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 9/82 (10%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL---AQLH 577
           +HG +S   +E V+  F+ G  ++L+AT V   G+DV +  +++     H+ L    +++
Sbjct: 268 VHGDLSQAARERVVARFRKGLVRVLVATDVAARGLDVPEVELVV-----HYRLPERVEVY 322

Query: 578 QLR-GRVGRGEEISSCILLYHP 598
           Q R GR GR     + +LLY P
Sbjct: 323 QHRSGRTGRAGRTGTVVLLYGP 344


>gi|237728049|ref|ZP_04558530.1| primosome assembly protein PriA [Citrobacter sp. 30_2]
 gi|226910306|gb|EEH96224.1| primosome assembly protein PriA [Citrobacter sp. 30_2]
          Length = 746

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 235 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----ITRFRERFNAPVEVL 290

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH--RFGVQQRL 412
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H   +  Q+  
Sbjct: 291 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQEGW 347

Query: 413 KLTQKATAPH--------VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +   +  A +        ++L +ATP   TL         + ++T +    +P
Sbjct: 348 RYHARDLAVYRAHSEQIPIILGSATPALETLCNVRQNKYRMLRLTRRAGNARP 400


>gi|218233461|ref|YP_002370229.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|229153612|ref|ZP_04281789.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1550]
 gi|218161418|gb|ACK61410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228629841|gb|EEK86493.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1550]
          Length = 481

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 134/326 (41%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID-ISKITEKPAGRKPIKTVI 462
             F  Q    + +  T    +L +AT +P         D++ +S+          IK   
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPE--------DVEKLSRTYMNSPTHIEIKAAG 211

Query: 463 IPINRID----EVIERLK------VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           I  ++I+    EVIE  K      V   E   +  I  + +E  +  +R + +R N   +
Sbjct: 212 ITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-KRANYPCD 270

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                   IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +     
Sbjct: 271 K-------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEK 323

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
            + +H+  GR GR       I    P
Sbjct: 324 ESYVHRT-GRTGRAGNSGKAITFITP 348


>gi|126309196|ref|XP_001369799.1| PREDICTED: similar to eukaryotic initiation factor 4AI [Monodelphis
           domestica]
          Length = 460

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 127 IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 186

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 187 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 243

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK +    V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 244 RGFKDQIYDIFQKLSGNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 288

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 289 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 348

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 349 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 399


>gi|28897027|ref|NP_796632.1| primosome assembly protein PriA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362279|ref|ZP_05775246.1| putative primosomal protein N' [Vibrio parahaemolyticus K5030]
 gi|260897594|ref|ZP_05906090.1| primosomal protein N` [Vibrio parahaemolyticus Peru-466]
 gi|28805235|dbj|BAC58516.1| primosomal protein N' [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087539|gb|EFO37234.1| primosomal protein N` [Vibrio parahaemolyticus Peru-466]
 gi|308111321|gb|EFO48861.1| putative primosomal protein N' [Vibrio parahaemolyticus K5030]
          Length = 734

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 19/159 (11%)

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQN 347
           SQ      +L+G  GSGKT V L  +   +E G QA+++ P IG+  Q     I ++ + 
Sbjct: 214 SQTGFACYLLEGVTGSGKTEVYLNLIKPVLEKGKQALVLVPEIGLTPQT----INRFKRR 269

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + V++I   + +  R  A        A IIIGT +       +  L ++IVDE+H   
Sbjct: 270 FNVPVDVIHSGLNETERLNAWLSARDKAAGIIIGTRSALLAP--FADLGIIIVDEEHDTS 327

Query: 408 VQQRLKL-----------TQKATAPHVLLMTATPIPRTL 435
            +Q+  L             K   P ++L +ATP   TL
Sbjct: 328 YKQQDSLRYHARDVAVMRAHKEQVP-IVLGSATPALETL 365


>gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 481

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 122/290 (42%), Gaps = 33/290 (11%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q YE +K+Y++ T +   ++ G +    +++AL R       +++ T
Sbjct: 96  RALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEALRR----GCEVLVAT 151

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT-LV 436
                D ++   + L     +++DE  R      L   ++       ++   P  R  L+
Sbjct: 152 PGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLER-------IIRLLPAQRQGLL 204

Query: 437 LTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            ++    +I K+     GR     P++  +   N     I ++   +S  +K   +   +
Sbjct: 205 FSATFSNEIRKL-----GRSYLNHPVEIEVAARNATANTITQIAYKMSGDQKRAAVVHLV 259

Query: 493 EEK--KE----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + +  K+    SN +    R     E        IHG  +  D+   +++FK G  ++L+
Sbjct: 260 KSRGLKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGELEVLV 319

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           AT V   G+DV     +I  +  +     +H++ GR GR       I L+
Sbjct: 320 ATDVAARGLDVAGVPCVINYDLPYNAEDYVHRI-GRTGRAGATGEAIALF 368


>gi|294495760|ref|YP_003542253.1| DEAD/DEAH box helicase [Methanohalophilus mahii DSM 5219]
 gi|292666759|gb|ADE36608.1| DEAD/DEAH box helicase domain protein [Methanohalophilus mahii DSM
           5219]
          Length = 431

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 132/316 (41%), Gaps = 50/316 (15%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT--QNTQII 351
           I Q   G+GKT    +  + M        Q +++ P   LA Q  E + K    QNT+++
Sbjct: 45  IGQAQTGTGKTAAFGIPALEMLDVKSKKVQVLVLCPTRELANQVAEEMSKLAKYQNTKML 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF 406
              + G  P   + KAL R      HI+IGT     D +Q   L L     V++DE    
Sbjct: 105 P--VYGGQPIDRQIKALRR----GVHIVIGTPGRIMDHLQRKTLKLDDVKMVVLDEADEM 158

Query: 407 ---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI-KT 460
              G ++ ++  L++       +L +AT +P+ ++  +       K  + P   K + K 
Sbjct: 159 LDMGFREDIEFILSRAPGKKQTVLFSAT-MPKPIIKLT------KKYQQNPQMVKTVHKK 211

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           + +P       IE+    + +  K   +C  I+     NF+S +  F +  ++    +  
Sbjct: 212 LTVP------QIEQYYFEVKDNAKTEVLCRLIDI---YNFKSSL-VFCNTKKNVDKQVET 261

Query: 521 I----------HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           +          HG M    +E VM +F+ G  + L+AT V   GIDV     +   +   
Sbjct: 262 LKARGYLVDGMHGDMRQAQRERVMSNFRKGEIETLVATDVAARGIDVESIEAVFNYDIPQ 321

Query: 571 FGLAQLHQLRGRVGRG 586
              + +H++ GR GR 
Sbjct: 322 DEESYVHRI-GRTGRA 336


>gi|260899524|ref|ZP_05907919.1| putative primosomal protein N' [Vibrio parahaemolyticus AQ4037]
 gi|308108816|gb|EFO46356.1| putative primosomal protein N' [Vibrio parahaemolyticus AQ4037]
          Length = 734

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 19/159 (11%)

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQN 347
           SQ      +L+G  GSGKT V L  +   +E G QA+++ P IG+  Q     I ++ + 
Sbjct: 214 SQTGFACYLLEGVTGSGKTEVYLNLIKPVLEKGKQALVLVPEIGLTPQT----INRFKRR 269

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + V++I   + +  R  A        A IIIGT +       +  L ++IVDE+H   
Sbjct: 270 FNVPVDVIHSGLNETERLNAWLSARDKAAGIIIGTRSALLAP--FADLGIIIVDEEHDTS 327

Query: 408 VQQRLKL-----------TQKATAPHVLLMTATPIPRTL 435
            +Q+  L             K   P ++L +ATP   TL
Sbjct: 328 YKQQDSLRYHARDVAVMRAHKEQVP-IVLGSATPALETL 365


>gi|239820939|ref|YP_002948124.1| ATP-dependent DNA helicase, RecQ family [Variovorax paradoxus S110]
 gi|239805792|gb|ACS22858.1| ATP-dependent DNA helicase, RecQ family [Variovorax paradoxus S110]
          Length = 590

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 130/320 (40%), Gaps = 51/320 (15%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE-----FIKKYTQNTQIIVEIIT 356
            G+GK+L   +    AV A GQ V+++P+  L +   E      +     N+Q   + I 
Sbjct: 70  TGAGKSLCYQVP---AVLAPGQTVVVSPLIALMKDQCEKLNATGVSAVQLNSQCTAQEID 126

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQH---RFGV 408
                     A   IA G A +I  T     D+     +Q +   L++VDE H   ++G 
Sbjct: 127 ---------DAQAAIADGSARVIFSTPERLADADFLALLQRHPTSLLVVDEAHCISQWGH 177

Query: 409 QQR---LKLTQKATA---PHVLLMTATPIPRTL--VLTSLGDIDISKITEKPAGRKPIKT 460
             R   L+L     A   P VL +TAT        ++  LG I  + + +  A R  +  
Sbjct: 178 DFRPAYLELGAAVRALNHPVVLALTATANGEVAGEIMEKLG-IPRAGLVDTGAYRPNLHY 236

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            + P  R ++ + R  + L  G K   I      K    F + +            S  +
Sbjct: 237 AVEPAMREEDKLRR-ALALVAGLKGSGIVYTATVKAAEAFFAELAAAGE-------SAGL 288

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF----GLAQL 576
            HGR    ++ +  D+F  G  ++++AT    +G+D  D   ++     H+     L   
Sbjct: 289 YHGRRRAGERRAAQDAFMAGKLRVMVATNAFGMGVDKPDIRFVL-----HYQMPSSLDAY 343

Query: 577 HQLRGRVGRGEEISSCILLY 596
           +Q  GR GR  E + CILLY
Sbjct: 344 YQESGRAGRDGERADCILLY 363


>gi|323305584|gb|EGA59325.1| Fal1p [Saccharomyces cerevisiae FostersB]
          Length = 408

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 147/343 (42%), Gaps = 58/343 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q  AI  I+   S K+    I Q   G+GKT    I +  A++      QA+I++
Sbjct: 45  APSSIQSRAITQII---SGKDV---IAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILS 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +K       +    ITG        K +++  HG    + GT     D
Sbjct: 99  PTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQK--HG-CQAVSGTPGRVLD 155

Query: 389 SI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            I     Q   + ++++DE     + + L   Q+    + +        + +V+++  + 
Sbjct: 156 MIKRQMLQTRNVQMLVLDEADEL-LSETLGFKQQI---YDIFAKLPKNCQVVVVSATMNK 211

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           DI ++T K     P+K ++          +R ++ L EG K Y +     +K+E  F ++
Sbjct: 212 DILEVTRKFMN-DPVKILV----------KRDEISL-EGIKQYVVNV---DKEEWKFDTL 256

Query: 504 VERFNSL-------------------HEHFTSSIAII--HGRMSDIDKESVMDSFKNGTC 542
            + ++SL                        S+ A++  HG M   +++ VM+ F+ G  
Sbjct: 257 CDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHS 316

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   GIDV   S++I  +        +H++ GR GR
Sbjct: 317 RVLISTDVWXRGIDVQQVSLVINYDLPEIIEXYIHRI-GRSGR 358


>gi|316968374|gb|EFV52655.1| eukaryotic initiation factor 4A-III [Trichinella spiralis]
          Length = 970

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 150/361 (41%), Gaps = 46/361 (12%)

Query: 253 IPINVEGKIAQKILRNI---PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           IP   E  + +++LR I    F+ P+  Q+ AI+ I+           I Q   G+GKT 
Sbjct: 39  IPTFEEMNLKRELLRGIYAYGFNKPSMIQKRAIRPIVSGRDV------IAQSQSGTGKTA 92

Query: 309 VALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
              I +   ++      QA+++AP   LAQQ  + +        +      G     +  
Sbjct: 93  TFSIGLLQVIDTQLRETQALVLAPTRELAQQIQKVVLALGDRMNVQAHACIGG---TNVG 149

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + + ++ +GQ H+++GT     D I    L     D    F + +  ++  K      L+
Sbjct: 150 EDIRKLDYGQ-HVVVGTPGRVFDMITRQNLR---TDSLKVFVMDEADEMLTKGNELLYLI 205

Query: 426 MT-----------ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
           +              P  + +V+++    +I ++T    G+   + V I + R +  +E 
Sbjct: 206 LGFKDQIYDIYRFLPPGIQVVVISATLPHEILEMT----GKFMTEPVRILVKRDELTLEG 261

Query: 475 LKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEHFTSSIAIIHGR 524
           ++      ++  W    + +  +S          N R  VE  +   +    ++  IHG 
Sbjct: 262 IRQYFVHVEREDWKFETLCDLYDSITISQAVVFCNTRHKVEWLDEKMKESNFTVGAIHGE 321

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   D+  V+  F++G  ++LI+T V   G+D+   S++I  +      A LH++ GR G
Sbjct: 322 MDQKDRNEVVRKFRDGIYRVLISTDVWSRGLDIPGVSLVINYDVPTNREAYLHRI-GRSG 380

Query: 585 R 585
           R
Sbjct: 381 R 381


>gi|282881448|ref|ZP_06290122.1| DEAD/DEAH box helicase [Prevotella timonensis CRIS 5C-B1]
 gi|281304674|gb|EFA96760.1| DEAD/DEAH box helicase [Prevotella timonensis CRIS 5C-B1]
          Length = 438

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 140/324 (43%), Gaps = 45/324 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    GSGKTL  L+ +   ++      QAV++ P   LA Q  E ++  T+  +    
Sbjct: 34  ILLSPTGSGKTLAYLLPILQKLDVSSKEVQAVVIVPNRELAIQSAEVMQLLTKAMKGFA- 92

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
              G  P     + L ++   Q  I+  T     D +    + +     V++DE  +   
Sbjct: 93  -CYGGRPTMDEHRQLRQV---QPQIVFATPGRLNDHLDKRNIAIETIQYVVIDEFDKCLE 148

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATP---IPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            G Q+ + K+ +K TA    +L++AT    IP  + + +   +D   +T      + ++ 
Sbjct: 149 MGFQEEMSKILEKLTAVKQRILLSATDAVEIPHFVNMNNGERLDY--LTSATVSHQ-VRV 205

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL--HEHFTSSI 518
             +     D++    +++LS G ++  +         +N+R   ER +     +HF S++
Sbjct: 206 FSVHSPDKDKLQTLKQLLLSFGNQSTIVF--------TNYRESAERIHDYLTFQHFYSTV 257

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              HG +   ++ES +  F NG+  +L++T +   G+D+ D     ++N  H+ L    +
Sbjct: 258 --FHGGLDQQERESSIYKFSNGSVNILVSTDLASRGLDIPD-----VDNIVHYQLPDQEE 310

Query: 579 ----LRGRVGRGEEISSCILLYHP 598
                 GR  R E+     LL  P
Sbjct: 311 NYVHRTGRTARWEKEGRAFLLIGP 334


>gi|239636308|ref|ZP_04677310.1| primosomal protein N' [Staphylococcus warneri L37603]
 gi|239597663|gb|EEQ80158.1| primosomal protein N' [Staphylococcus warneri L37603]
          Length = 802

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 9/139 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q+SA   I + +        +L G  GSGKT V L A+ +A+  G QA+++ P I +
Sbjct: 266 THDQQSAFDAIKEKIDANEERTFLLHGVTGSGKTEVYLQAIESALNQGKQAMMLVPEIAL 325

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      +++  +    V ++   +    R    ++I  G+A + +G   ++F     
Sbjct: 326 TPQMVLRVKRRFGDD----VAVLHSGLSNGERYDEWQKIRDGRAQVSVGARSSIF---AP 378

Query: 392 YYKLILVIVDEQHRFGVQQ 410
           +  L L+I+DE+H    +Q
Sbjct: 379 FKNLGLIIIDEEHESTYKQ 397



 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 34/195 (17%)

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK-------ESVMDSFKNGT 541
           CP  E +      +  +R   L +       II  RM D+D        E +++ F+NG 
Sbjct: 547 CPNCESEHIRQVGTGTQRVEELLQQEFEQAKII--RM-DVDTTSRKGAHEKLLNDFENGK 603

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAE------HFGLAQ-----LHQLRGRVGRGEEIS 590
             +L+ T +I  G+D  + +++ + NA+       F  ++     L Q+ GR GR E+  
Sbjct: 604 GDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPDFRASERTYQLLTQVAGRAGRHEKEG 663

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI--------LGIKQSGMP 642
             I+  + P     Y    V KN  D     E+++  RK G+           I    M 
Sbjct: 664 KVIIQTYNP---EHYAIEDVKKN--DYLTFYEQEMTYRKLGKYPPYYFLINFTISHKEMK 718

Query: 643 KFLIAQPELHDSLLE 657
           K + A   +H  LL+
Sbjct: 719 KVMEASKHIHKILLQ 733


>gi|227358108|ref|ZP_03842449.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|227161444|gb|EEI46481.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 457

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 131/325 (40%), Gaps = 48/325 (14%)

Query: 299 QGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIV 352
           Q   GSGKT    + +   ++A     Q++++ P   LA Q       + ++  N +I+ 
Sbjct: 46  QAKTGSGKTAAFGLGLLQRIDAKQFNTQSLVLCPTRELADQVANELRRLARFLPNIKILT 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P + +R +L    H  AHII+ T     D +    + L     +++DE  R  
Sbjct: 106 --LCGGVPFSIQRDSL---IHA-AHIIVATPGRLLDHLNKQTVTLADVKTLVLDEADRML 159

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
             G    +   ++Q +     LL +AT  P  +   S       KI + P        V 
Sbjct: 160 DMGFFDDISDIISQMSAQRQTLLFSAT-WPDEIAKIS------RKIQQDP--------VT 204

Query: 463 IPINRIDEV---------IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           I IN  DE+         I R   +    K      P       +  R   + + +L E 
Sbjct: 205 IEINSPDELPAVEQQFYEISRYGKLGLLQKLLSHHQPNSCVVFCNTKRDCQDVYEALTES 264

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             S +A+ HG M   +++  +  F NG+C++L+AT V   G+D+    ++I     H   
Sbjct: 265 NQSVLAL-HGDMEQKERDQTLIRFANGSCRVLVATDVAARGLDIKALEMVINYELSHDPE 323

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
             +H++ GR  R  E    I    P
Sbjct: 324 VHIHRI-GRTARAGESGLAISFCAP 347


>gi|158257374|dbj|BAF84660.1| unnamed protein product [Homo sapiens]
          Length = 406

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|152972730|ref|YP_001337876.1| primosome assembly protein PriA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150957579|gb|ABR79609.1| primosome assembly protein PriA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 731

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ Q     VE++
Sbjct: 220 LLAGITGSGKTEVYLSVLENVLAQGRQALVMVPEIGLTPQT----IARFRQRFNAPVEVL 275

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 276 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKDLGVIVIDEEHDSSYKQQ 329


>gi|156098189|ref|XP_001615127.1| eukaryotic initiation factor [Plasmodium vivax SaI-1]
 gi|148804001|gb|EDL45400.1| eukaryotic initiation factor, putative [Plasmodium vivax]
          Length = 388

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 142/335 (42%), Gaps = 47/335 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+  IK IL           ILQ   G+GKT V  +     V    +  Q +I++P
Sbjct: 38  PSAIQQRGIKPILSGRDV------ILQSQSGTGKTCVFAVGALNCVNRNLSETQVIILSP 91

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA----- 384
              LA+Q  +          + +    G    +   KAL   ++G  HII GT       
Sbjct: 92  TRELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDIKAL---SNG-VHIISGTPGRIYHM 147

Query: 385 --LFQDSIQYYK-LILVIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPRTLVLTSL 440
             L     +Y K L++   DE    G ++++    +  +P+  +++++  +P+       
Sbjct: 148 LNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIVLSSATLPQ------- 200

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
              ++ +IT K   R P+K   I + R +  +E +K      +K  W    + +  ES  
Sbjct: 201 ---EVLEITNKFMHR-PVK---ILVKRDELTLEGIKQFFVSIEKEQWKYETLADLYESLT 253

Query: 499 --------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   N +  V+      +    ++  +H  MS  +++ +M  F+    ++LI+T +
Sbjct: 254 ITQAVVFCNTKLKVDWLTKKMQEANFTVCKMHAGMSQSERDDIMLKFRQCKFRVLISTDI 313

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              G+DV + S+++  +  +   + +H++ GR GR
Sbjct: 314 WGRGLDVQEVSLVVNYDLPNSRESYIHRI-GRSGR 347


>gi|119719922|ref|YP_920417.1| DEAD/DEAH box helicase domain-containing protein [Thermofilum
           pendens Hrk 5]
 gi|119525042|gb|ABL78414.1| DEAD/DEAH box helicase domain protein [Thermofilum pendens Hrk 5]
          Length = 946

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 135/312 (43%), Gaps = 42/312 (13%)

Query: 297 ILQGDVGSGKTLVALI-AMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           ++    G+GKT  A++  +   VE GG+   A+ + P+  L +  Y+ + +  +      
Sbjct: 58  LISAPTGAGKTEAAVLPVLRDLVEKGGKPIYALYVTPLRALNRDIYDRMVELFRALGFEA 117

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGT---------HALFQDSIQYYKLILVIVDEQ 403
           E+  G+ PQ  RR    RIA    H++I T            +++ ++  +   V+VDE 
Sbjct: 118 EVRHGDTPQRVRR----RIAESPPHMLITTPETTQFLLVDGRYREHLKNTRW--VVVDEV 171

Query: 404 HRF-----GVQQRLKLTQ-KATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
           H       G Q  L L + +  +P   V+ ++AT       L  L    +  + E    R
Sbjct: 172 HELLDDKRGAQLSLALERLRLISPGLRVVGLSATLRDPEAALRLLSGGRVGTVVEWFE-R 230

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS-LHEHF 514
           K  + V+  I+   ++  R+K V         +C        +N R   E     L   +
Sbjct: 231 KAYELVVEDIDEEGDLAGRVKRVAE-------LCRGGGVIVFTNTRDTAEFIGRVLARDY 283

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             ++ + HG +S  ++E     FK+G    ++AT+ +E+G+D+  A +++      FG  
Sbjct: 284 GLNVRVHHGSLSRQEREEAERLFKSGRVDAIVATSSLELGVDIGYARLVV-----QFGSP 338

Query: 575 -QLHQLRGRVGR 585
            Q  +L  RVGR
Sbjct: 339 RQAIKLAQRVGR 350


>gi|92116156|ref|YP_575885.1| primosome assembly protein PriA [Nitrobacter hamburgensis X14]
 gi|91799050|gb|ABE61425.1| replication restart DNA helicase PriA [Nitrobacter hamburgensis
           X14]
          Length = 738

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 9/133 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           ++SQ +A+  +    S     + +L G  GSGKT V   A+A  +  G QA+I+ P  +L
Sbjct: 206 SRSQRTAVDAMRALASNGTFHVALLDGVTGSGKTEVYFEAVAETIRRGKQALILMPEIVL 265

Query: 334 AQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q  + F  ++ +     +E  +   P+  R +    IA G+  +++G   ALF   + 
Sbjct: 266 TGQFRDRFAARFGERP---LEWHSELTPRT-RARNWAAIAAGEGQVVVGARSALF---LP 318

Query: 392 YYKLILVIVDEQH 404
           Y  L L+IVDE+H
Sbjct: 319 YADLGLIIVDEEH 331


>gi|4503529|ref|NP_001407.1| eukaryotic initiation factor 4A-I isoform 1 [Homo sapiens]
 gi|21450625|ref|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mus musculus]
 gi|40786436|ref|NP_955404.1| eukaryotic initiation factor 4A-I [Rattus norvegicus]
 gi|77735407|ref|NP_001029400.1| eukaryotic initiation factor 4A-I [Bos taurus]
 gi|154147660|ref|NP_001093666.1| eukaryotic initiation factor 4A-I [Sus scrofa]
 gi|326807000|ref|NP_001192066.1| eukaryotic initiation factor 4A-I [Callithrix jacchus]
 gi|149724255|ref|XP_001504824.1| PREDICTED: eukaryotic translation initiation factor 4A, isoform 1
           [Equus caballus]
 gi|291405131|ref|XP_002718844.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Oryctolagus cuniculus]
 gi|301778191|ref|XP_002924476.1| PREDICTED: eukaryotic initiation factor 4A-I-like [Ailuropoda
           melanoleuca]
 gi|46397463|sp|P60842|IF4A1_HUMAN RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|46397464|sp|P60843|IF4A1_MOUSE RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|109892471|sp|Q3SZ54|IF4A1_BOVIN RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|219403|dbj|BAA02897.1| eukaryotic initiation factor 4AI [Homo sapiens]
 gi|2943740|dbj|BAA25075.1| eIF4A [Mus musculus]
 gi|16307020|gb|AAH09585.1| Eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|26346290|dbj|BAC36796.1| unnamed protein product [Mus musculus]
 gi|29612606|gb|AAH49915.1| Eukaryotic translation initiation factor 4A1 [Mus musculus]
 gi|39793992|gb|AAH63812.1| Eukaryotic translation initiation factor 4A1 [Rattus norvegicus]
 gi|49522221|gb|AAH73752.1| Eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|54696622|gb|AAV38683.1| eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|54696624|gb|AAV38684.1| eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|58864806|emb|CAI51943.1| eukaryotic translation initiation factor 4A1 [Mus musculus]
 gi|61357581|gb|AAX41409.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
 gi|61357587|gb|AAX41410.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
 gi|74138684|dbj|BAE27158.1| unnamed protein product [Mus musculus]
 gi|74138757|dbj|BAE27191.1| unnamed protein product [Mus musculus]
 gi|74139346|dbj|BAE40818.1| unnamed protein product [Mus musculus]
 gi|74139356|dbj|BAE40821.1| unnamed protein product [Mus musculus]
 gi|74139407|dbj|BAE40845.1| unnamed protein product [Mus musculus]
 gi|74141945|dbj|BAE41037.1| unnamed protein product [Mus musculus]
 gi|74151432|dbj|BAE38831.1| unnamed protein product [Mus musculus]
 gi|74151508|dbj|BAE38862.1| unnamed protein product [Mus musculus]
 gi|74177669|dbj|BAE38935.1| unnamed protein product [Mus musculus]
 gi|74185163|dbj|BAE39182.1| unnamed protein product [Mus musculus]
 gi|74188940|dbj|BAE39241.1| unnamed protein product [Mus musculus]
 gi|74189138|dbj|BAE39326.1| unnamed protein product [Mus musculus]
 gi|74189153|dbj|BAE39332.1| unnamed protein product [Mus musculus]
 gi|74193609|dbj|BAE22765.1| unnamed protein product [Mus musculus]
 gi|74198159|dbj|BAE35256.1| unnamed protein product [Mus musculus]
 gi|74201277|dbj|BAE26099.1| unnamed protein product [Mus musculus]
 gi|74204464|dbj|BAE39979.1| unnamed protein product [Mus musculus]
 gi|74208421|dbj|BAE26397.1| unnamed protein product [Mus musculus]
 gi|74211475|dbj|BAE26477.1| unnamed protein product [Mus musculus]
 gi|74220076|dbj|BAE40614.1| unnamed protein product [Mus musculus]
 gi|74220399|dbj|BAE31424.1| unnamed protein product [Mus musculus]
 gi|74268155|gb|AAI03131.1| Eukaryotic translation initiation factor 4A, isoform 1 [Bos taurus]
 gi|85792232|gb|ABC84193.1| eukaryotic translation initiation factor 4A isoform 1 [Sus scrofa]
 gi|90076216|dbj|BAE87788.1| unnamed protein product [Macaca fascicularis]
 gi|119610573|gb|EAW90167.1| eukaryotic translation initiation factor 4A, isoform 1, isoform
           CRA_b [Homo sapiens]
 gi|119610574|gb|EAW90168.1| eukaryotic translation initiation factor 4A, isoform 1, isoform
           CRA_b [Homo sapiens]
 gi|123992423|gb|ABM83970.1| eukaryotic translation initiation factor 4A, isoform 1 [synthetic
           construct]
 gi|123999458|gb|ABM87287.1| eukaryotic translation initiation factor 4A, isoform 1 [synthetic
           construct]
 gi|149053069|gb|EDM04886.1| eukaryotic translation initiation factor 4A1, isoform CRA_c [Rattus
           norvegicus]
 gi|168279007|dbj|BAG11383.1| eukaryotic initiation factor 4A-I [synthetic construct]
 gi|189069177|dbj|BAG35515.1| unnamed protein product [Homo sapiens]
 gi|296476703|gb|DAA18818.1| eukaryotic translation initiation factor 4A isoform 1 [Bos taurus]
 gi|227238|prf||1617105B initiation factor 4AI
          Length = 406

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|300708923|ref|XP_002996632.1| hypothetical protein NCER_100260 [Nosema ceranae BRL01]
 gi|239605948|gb|EEQ82961.1| hypothetical protein NCER_100260 [Nosema ceranae BRL01]
          Length = 490

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 133/334 (39%), Gaps = 59/334 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYE---------FIKKYT 345
           I +   GSGKTL  +I +   +      +AVI+ P+  L  Q            F+ K  
Sbjct: 66  ICKAPTGSGKTLCYIIPVIQKILKNPNSKAVIICPVRELCDQIKSVCLELTKKLFVNKKN 125

Query: 346 QNTQIIVEIITGNMP---QAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLIL 397
           +N  +     T N P      R    E + +  A+III T       L +  I +  L  
Sbjct: 126 ENCDLYYNPKTANQPISVMTIRSDKQELVDYSDANIIIATPGRLIFNLEKKFINFDNLDT 185

Query: 398 VIVDEQHRF---GVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKP 452
           ++ DE  +      ++++   +      V   + +AT              DI  +  KP
Sbjct: 186 IVFDEADKLYDSTFKRQIDTIKSFIKKDVQTCMFSATYCKEIR--------DIFNLITKP 237

Query: 453 AG---------RKPIKTVIIP-INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
                      +  +K  I P   +ID+++E LK +   G    W    +E +K   F  
Sbjct: 238 DRVYFEADFEIKTNVKQEIYPNFKKIDKIVEVLKSLTLVGN---WR-ETVESEKVMIF-- 291

Query: 503 VVER-------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            VER        N L+    +S+ + HG  S  ++   +  FK+G   +LIAT V   G+
Sbjct: 292 -VERKVDCLKVANLLNSKGYNSVTL-HGDKSQYERNEAISKFKSGLSSILIATNVAARGL 349

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEE 588
           D+ +  ++I  +        +H++ GR GR GEE
Sbjct: 350 DIREVKLVINYDLPRTIDEYIHRI-GRTGRAGEE 382


>gi|269792122|ref|YP_003317026.1| DEAD/DEAH box helicase domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099757|gb|ACZ18744.1| DEAD/DEAH box helicase domain protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 558

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 134/322 (41%), Gaps = 43/322 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQA---VIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I+Q   GSGKTL   + +   +E G ++   ++++P   LA Q     +    + +I V 
Sbjct: 47  IVQAKTGSGKTLAFALPLLNRMEFGERSPKVLVLSPTRELALQTAREFQWLGYDLRIRVA 106

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
            + G M    + KAL       A +++GT     D I+           L+L   D    
Sbjct: 107 SLVGGMDMERQVKALRE----GAAVVVGTPGRVLDHIRRGTFRADLVESLVLDEGDHMLD 162

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK---ITEKPAGRKPI-- 458
            G +  L+  +          L +AT +P  +V  +   +D  +   + E  A    I  
Sbjct: 163 LGFKDELEDIMAAMTQVERSWLFSAT-MPEEVVTLAKQYLDAPRKISLVEDAAKHDDIVQ 221

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +  IIP  R  E +  + ++    ++    C    + +E     + ER     E F +S 
Sbjct: 222 RAYIIPARRRFEGLANV-LLFERPRRGIVFCATKLQTQE-----LAERL--CDEGFKASA 273

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG M+  ++   +++ + G  ++L+AT V   G+D+   S +I      FGL    +
Sbjct: 274 --LHGDMTQRERNMALENLRRGRSQILVATDVAARGLDISGVSHVI-----QFGLPGCLE 326

Query: 579 L----RGRVGR-GEEISSCILL 595
                 GR GR G+E  + ILL
Sbjct: 327 TFIHRSGRTGRAGQEGRNLILL 348


>gi|229112867|ref|ZP_04242398.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock1-15]
 gi|296505875|ref|YP_003667575.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|228670546|gb|EEL25859.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock1-15]
 gi|296326927|gb|ADH09855.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 481

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 134/326 (41%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID-ISKITEKPAGRKPIKTVI 462
             F  Q    + +  T    +L +AT +P         D++ +S+          IK   
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPE--------DVEKLSRTYMNSPTHIEIKAAG 211

Query: 463 IPINRID----EVIERLK------VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           I  ++I+    EVIE  K      V   E   +  I  + +E  +  +R + +R N   +
Sbjct: 212 ITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-KRANYPCD 270

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                   IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +     
Sbjct: 271 K-------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEK 323

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
            + +H+  GR GR       I    P
Sbjct: 324 ESYVHRT-GRTGRAGNSGKAITFITP 348


>gi|255539651|ref|XP_002510890.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223550005|gb|EEF51492.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 690

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 130/330 (39%), Gaps = 52/330 (15%)

Query: 302 VGSGKTLVALIAMAAAVEAG-------------GQAVIMAPIGILAQQHYEFIKKYTQNT 348
            G GKTL  ++ +  ++  G                +++ P   LA Q ++  K Y ++ 
Sbjct: 151 TGQGKTLAFVLPILESITNGHAKESRKTGYGRPPSVLVLLPTRELASQVFDDFKVYGESL 210

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-------YYKL-ILVIV 400
            +    + G      +  +L+R       I++GT    +D I+       Y K  +L   
Sbjct: 211 GLTSCCLYGGASYHPQEMSLKR----GVDIVVGTPGRVKDHIERGNINLSYLKFRVLDEA 266

Query: 401 DEQHRFGVQQRLKL----TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT------E 450
           DE  R G  + ++L     +  +    LL +AT +P  +   S   +  SK T      E
Sbjct: 267 DEMLRMGFVEDVELILGKVEDVSKVQTLLFSAT-LPEWVKQISSRFLKASKKTIDLVGNE 325

Query: 451 KPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           K      ++ +I+P +   I +VI  +    S G +         EK+ES      E   
Sbjct: 326 KMKASTNVRHIILPCSASAIPQVIPDIIRCYSSGGRTIIFT----EKRES----ANELAG 377

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            LH         +HG +    +E  +  F++G    L+AT V   G+D+ D  +II    
Sbjct: 378 LLH-----GARALHGEIQQSQREVTLSGFRSGKFLTLVATNVAARGLDINDVQLIIQCEP 432

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                A +H+  GR GR       ++LY P
Sbjct: 433 PRDVEAYIHR-SGRTGRAGNTGVAVMLYDP 461


>gi|161501867|ref|NP_762119.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6]
 gi|319999566|gb|AAO07109.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6]
          Length = 459

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 133/310 (42%), Gaps = 37/310 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I QG  GSGKT    + + + +       Q++++ P   LA Q    I+   +    I V
Sbjct: 44  IGQGKTGSGKTATFALGLLSNLNVSRFRVQSLVLCPTRELADQVATEIRTLARGIHNIKV 103

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF- 406
             + G MP   +  +LE   HG AHI++GT       L +  I   +L  +++DE  R  
Sbjct: 104 LTLCGGMPMGPQILSLE---HG-AHILVGTPGRILDHLSKGRIDLAELNTLVLDEADRML 159

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIK 459
             G Q  +   +    T    LL +AT  P    T+    + + ++ K+ E    +  I+
Sbjct: 160 EMGFQDAIDAIIDVAPTQRQTLLFSAT-FPEQIETIASKVMQNPEMVKV-ESTHQKSTIE 217

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHFTSS 517
                +   +E    L+ +L   +    +  C     KKE   ++V +  N  H  F  S
Sbjct: 218 QRFYQLENTEERDNALEALLLTHRPESTVVFC---NTKKE--VQNVTDELN--HRRF--S 268

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +  +HG M   ++E  +  F N +  +L+AT V   G+DV +   +I  N E     ++H
Sbjct: 269 VIELHGDMEQRERERALTMFANKSISILVATDVAARGLDVDNLDAVI--NFELSRDPEVH 326

Query: 578 QLR-GRVGRG 586
             R GR GR 
Sbjct: 327 VHRIGRTGRA 336


>gi|148727325|ref|NP_001092045.1| eukaryotic initiation factor 4A-I [Pan troglodytes]
 gi|158514251|sp|A5A6N4|IF4A1_PANTR RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|146741502|dbj|BAF62407.1| eukaryotic translation initiation factor 4A, isoform 1 [Pan
           troglodytes verus]
          Length = 406

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 525

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/354 (19%), Positives = 145/354 (40%), Gaps = 60/354 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGG-QA 324
           +P+  Q  AI  +LQ    K+ M        G+GKT      ++ L++     +AG  +A
Sbjct: 34  TPSPIQAQAIPAVLQG---KDVMA---AAQTGTGKTAGFTLPMLELLSKGNRAQAGQVRA 87

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +N  +   +I G +P   +   + ++ HG   +++ T  
Sbjct: 88  LVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQ---IAKLRHG-VDVLVATPG 143

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 144 RLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRK-------ILAILPKQRQNLMFS 196

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
               D  +   K     P++  + P N     +++            W+CP  + +K   
Sbjct: 197 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQ------------WVCPVDKSQKSAL 244

Query: 497 ------ESNFRSVV---------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 +++++ V+          R     E      A IHG  S   +   +  FKNG 
Sbjct: 245 LIQLIKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQ 304

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            ++L+AT +   G+D+     ++  +  +     +H++ GR GR       + L
Sbjct: 305 ARVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGQAVSL 357


>gi|113197617|gb|AAI21215.1| zinc responsive protein Zd10A [Xenopus (Silurana) tropicalis]
          Length = 479

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 148/352 (42%), Gaps = 73/352 (20%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+K QE+A+  +L D  Q      I Q   G+GKT   ++AM + V+A     Q + ++P
Sbjct: 116 PSKIQENALPMMLADPPQN----LIAQSQSGTGKTAAFVLAMLSRVDAKKTYPQCMCLSP 171

Query: 330 IGILAQQH---YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA Q     E + K+    ++I  +  GN P         +    +A I+IGT    
Sbjct: 172 TFELALQTGKVVEEMGKFCNGIKVIYAV-RGNRPG--------KGTQIEAQIVIGTPGTV 222

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQR-LKLTQKATAPHVLLMTATPIPRT----LVLTSLG 441
            D    +KL L+ V     F + +  + +  +  + H + +  + +P+T    L   + G
Sbjct: 223 LDWC--FKLRLINVKNISVFVLDEADVMINVQGHSDHSVRVKRS-MPKTCQMLLFSATFG 279

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           D  +    E+          I+P   I + +++ ++ L   ++ Y  C    E KE  + 
Sbjct: 280 D-SVWAFAER----------IVPDPNIIK-LKKEELTLDNIQQFYDKC----ENKEQKYS 323

Query: 502 SVVERF------------------NSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           ++   +                  N L  H       +A++ G +S  D+  ++  F+ G
Sbjct: 324 ALCNMYGIITIAQAIVFCQTRKIANWLSRHMLEDGHQVALLSGELSVCDRAEMIQRFREG 383

Query: 541 TCKLLIATTVIEVGIDVVDASIII-------IENAEHFGLAQLHQLRGRVGR 585
             K+L+ T V   GIDV   SI++       ++ +  F    LH++ GR GR
Sbjct: 384 KDKVLVTTNVCARGIDVEQVSIVVNFDLPVNVDGSVDFE-TYLHRI-GRTGR 433


>gi|37676305|ref|NP_936701.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus YJ016]
 gi|37200846|dbj|BAC96671.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 459

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 131/310 (42%), Gaps = 37/310 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I QG  GSGKT    + + + +       Q++++ P   LA Q    I+   +    I V
Sbjct: 44  IGQGKTGSGKTATFALGLLSNLNVSRFRVQSLVLCPTRELADQVATEIRTLARGIHNIKV 103

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR-- 405
             + G MP   +  +LE   HG AHI++GT       L +  I   +L  +++DE  R  
Sbjct: 104 LTLCGGMPMGPQILSLE---HG-AHILVGTPGRILDHLSKGRIDLAELNTLVLDEADRML 159

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIK 459
              F       +    T    LL +AT  P    T+    + + ++ K+ E    +  I+
Sbjct: 160 EMGFQDAIDAIIDAAPTQRQTLLFSAT-FPEQIETIASKVMQNPEMVKV-ESTHQKSTIE 217

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHFTSS 517
                +   +E    L+ +L   +    +  C     KKE   ++V +  N  H  F  S
Sbjct: 218 QRFYQLESTEERDNALEALLLTHRPESTVVFC---NTKKE--VQNVTDELN--HRRF--S 268

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +  +HG M   ++E  +  F N +  +L+AT V   G+DV +   +I  N E     ++H
Sbjct: 269 VIELHGDMEQRERERALTMFANKSISILVATDVAARGLDVDNLDAVI--NFELSRDPEVH 326

Query: 578 QLR-GRVGRG 586
             R GR GR 
Sbjct: 327 VHRIGRTGRA 336


>gi|319955547|ref|YP_004166814.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319424207|gb|ADV51316.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 438

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 136/313 (43%), Gaps = 42/313 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    G+GKTL  L+ +   ++A     QA+I+ P   LA Q  + ++     T   V 
Sbjct: 38  ILLSPTGTGKTLAFLLPLLKTLDATIDEVQALIVVPSRELAIQIEQVLR--IMGTGFKVN 95

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF-- 406
            + G    A  +  L+   H  A I+IGT          D      +  +I+DE  +   
Sbjct: 96  AVYGGRTMAKDKSELK---HNPA-ILIGTPGRILDHFMNDRFSKESIKTLILDEFDKCLD 151

Query: 407 -GVQQRLKLTQKATAPHV---LLMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            G    +K    A  P +   +L +AT    IP  + L     + I+ + EK A +  IK
Sbjct: 152 KGFSDEMKGII-ANVPRINKRILTSATQNIEIPPFVRLDK--PVLINYLKEKKALKLEIK 208

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           TVI P+    + +  L +V+  G +   +   ++E  E   + + E+  S H  F+    
Sbjct: 209 TVISPLRNKSQTL--LDLVMHLGNEQGIVFCNLKENIEYLDKFLTEKKIS-HSTFS---- 261

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-AQLHQ 578
              G M   D++  +  F+NGT +LLIAT +   GIDV +   II     H+ + A   +
Sbjct: 262 ---GEMEQYDRDRALIKFRNGTSQLLIATDLAARGIDVPELKYII-----HYDVPASEEE 313

Query: 579 LRGRVGRGEEISS 591
              R GR   +++
Sbjct: 314 FTHRNGRTARVNT 326


>gi|310767698|gb|ADP12648.1| ATP-dependent RNA helicase DbpA [Erwinia sp. Ejp617]
          Length = 459

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 97/443 (21%), Positives = 175/443 (39%), Gaps = 87/443 (19%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIV 352
           Q   GSGKT    + +   V+A     QA+++ P   LA Q       + ++T N +I+ 
Sbjct: 46  QAKTGSGKTAAFGLGVMHRVDASQYVTQALVLCPTRELADQVTKELRRLARFTSNIKILT 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G  P   +R +L    H   HI++GT     D ++   L L     +++DE  R  
Sbjct: 106 --LCGGQPVGAQRDSL---LHA-PHIVVGTPGRILDHLKRETLKLGAINTLVLDEADRML 159

Query: 407 --------------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DISKITEK 451
                           Q R  L   AT P  +   +  I R  +    GD+ D+  I + 
Sbjct: 160 EMGFREDIDTIISHSPQARQTLLFSATWPQAIAQISQSIQRDPLTIETGDVSDLPAIEQT 219

Query: 452 --PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERF 507
              AG +   T +I +             LSE + +  +  C         N +   +  
Sbjct: 220 FYEAGAREKLTALIGL-------------LSERQPSSCVVFC---------NTKRECDEI 257

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
               +    S   +HG +   +++ ++  F NG+C++L+AT V   G+D+   ++++   
Sbjct: 258 AYALDKAQISAQPLHGDLEQRERDQMLIRFANGSCRVLVATDVAARGLDIKALALVVNYQ 317

Query: 568 AEHFGLAQLHQLRGRVGR-GEEISSCILLYHPP-------------LSKNSYTRLSVLKN 613
                   +H++ GR  R G+E   C + +  P               K  +  LS LK 
Sbjct: 318 LSFDPEVHVHRI-GRTARAGQE--GCAVSFVAPDEMIRAHALEDYLQQKLVWCNLSALKA 374

Query: 614 TEDGFLIAE------EDLKQRK--EGEILG--IKQSGMPKFLIAQPELHDSLLEIA-RKD 662
                L+AE      E  ++ K   G+ILG    + G+    + + ++  +L  +A R++
Sbjct: 375 VAARPLLAEMVTVSLEGGRKAKIRPGDILGALTGEGGLNGDQVGKIDIASTLAYVAIRRE 434

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
               + Q      ++G+S R  L
Sbjct: 435 LARKVMQQLQQVKIKGKSCRARL 457


>gi|229148341|ref|ZP_04276624.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST24]
 gi|228635135|gb|EEK91682.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST24]
          Length = 481

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 134/326 (41%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID-ISKITEKPAGRKPIKTVI 462
             F  Q    + +  T    +L +AT +P         D++ +S+          IK   
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPE--------DVEKLSRTYMNSPTHIEIKAAG 211

Query: 463 IPINRID----EVIERLK------VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           I  ++I+    EVIE  K      V   E   +  I  + +E  +  +R + +R N   +
Sbjct: 212 ITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-KRANYPCD 270

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                   IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +     
Sbjct: 271 K-------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEK 323

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
            + +H+  GR GR       I    P
Sbjct: 324 ESYVHRT-GRTGRAGNSGKAITFITP 348


>gi|187934290|ref|YP_001887690.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722443|gb|ACD23664.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
           Eklund 17B]
          Length = 432

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 148/348 (42%), Gaps = 48/348 (13%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  E    Y+++T I   +I G + Q    K   RI      I+I T
Sbjct: 77  KALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQ----KPQTRILGEGVDILIAT 132

Query: 383 HALFQDSI--QYYKLILV---IVDEQHRFGVQQRLKLTQKATA--PHV---LLMTATPIP 432
                D I  +Y  L  V   ++DE  R      ++  +K  A  P V   LL +AT +P
Sbjct: 133 PGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKVRQNLLFSAT-MP 191

Query: 433 ---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWI 488
              ++LV + L D              P+K  + P++  ID + + +  V  + KK+  +
Sbjct: 192 SEVKSLVNSILKD--------------PVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLV 237

Query: 489 CPQIEEKKESNFRSVVERFNS------LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
               +E  +S       ++ +      L +  T S AI HG  S   ++  + +FK G  
Sbjct: 238 HLLKDESIKSLLVFSRTKYGANNIVKDLAKTGTESQAI-HGNKSQNARQLALSNFKEGKI 296

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSCILLYHP 598
           ++L+AT +   GIDV   S +I  +        +H++ GR GR    G  IS C +    
Sbjct: 297 RVLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRI-GRTGRAGNSGVAISFCDVDEKS 355

Query: 599 PLSKNSYT---RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
            L     T    + V+KN E   +    +  QRKE +      +  PK
Sbjct: 356 ALKDIEKTIGKNIPVMKNVEFERIAITREPAQRKEADKKTTDANKKPK 403


>gi|70732712|ref|YP_262475.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5]
 gi|68347011|gb|AAY94617.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           fluorescens Pf-5]
          Length = 444

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 124/287 (43%), Gaps = 29/287 (10%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHI 378
           +A+I+ P   LA+Q +E +++Y ++  +    + G +   PQ  + RK ++ +      +
Sbjct: 76  RALILVPTRELAEQVHESVRQYAEHLPLRTYAVYGGVSINPQMMKLRKGVDLLVATPGRL 135

Query: 379 IIGTHALF-QDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP--HVLLMTAT--P 430
           +     LF Q+++++ +L  +++DE  R    G  + LK    A       LL +AT   
Sbjct: 136 L----DLFRQNAVKFSQLQTLVLDEADRMLDLGFSEELKSIYAALPKKRQTLLFSATFSD 191

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWI 488
             R L    L D    +++ +      +K  ++P++  R  E+   L       +K  W 
Sbjct: 192 AIRQLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELFSHLL------RKNRWK 245

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +  K  +   ++VE+      +       IHG      ++  +D FK    ++L+AT
Sbjct: 246 QVLVFAKTRNGVDALVEKLQGQGVNADG----IHGDKPQATRQRALDRFKASEIQILVAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   G+D+ D  +++  +        +H++ GR GR       I L
Sbjct: 302 DVAARGLDIEDLPLVVNFDLPIVAEDYIHRI-GRTGRAGSTGEAISL 347


>gi|260063256|ref|YP_003196336.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata
           HTCC2501]
 gi|88783350|gb|EAR14522.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata
           HTCC2501]
          Length = 422

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 149/380 (39%), Gaps = 60/380 (15%)

Query: 260 KIAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           ++A+ ILR +       PT  Q  AI  +L      NR   +     G+GKT    I + 
Sbjct: 7   ELAEPILRALKKENYSRPTDIQAQAIPHVL------NRRDVMGSAQTGTGKTAAFAIPIL 60

Query: 316 AAVEA----GGQ-----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
             +E     GG+     A+I+ P   LA Q  E +  Y   T I   +I G + Q  + +
Sbjct: 61  QHLERDRRYGGKRGVVNALIVTPTRELAIQIGESLTAYGHYTGIRNTVIFGGVKQGKQVE 120

Query: 367 ALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF----GVQQRLKLTQK 417
           AL R       I++ T       + Q  I   K+   ++DE  R      +    K+  +
Sbjct: 121 ALRR----GVDILVATPGRLLDLMDQGIISLSKVEYFVLDEADRMLDMGFIHDIRKIIAR 176

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             A    L  +  +P  +V  S       KI   P     +K  + P++   E I +   
Sbjct: 177 LPAERQSLFFSATMPDDIVSLS------RKILSDP-----VKVAVSPVSSTAETIRQYLY 225

Query: 478 VLSEGKKAYWIC-----PQIEE-----KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++  K   +      P +++     + +     +V+           S A IHG  S 
Sbjct: 226 YTNKSDKNDLLLHILKDPDMDQVLLFARTKHGADRIVKNLGKKK----ISAAAIHGNKSQ 281

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             ++  +  FK+G  ++L+AT +   GID+     ++  +  +     +H++ GR GR  
Sbjct: 282 NQRQKALGQFKDGKVRVLVATDIAARGIDIDQLRYVVNFDIPNVAETYVHRI-GRSGRAG 340

Query: 588 EISSCILLYHPPLSKNSYTR 607
           E    I L  P   +N+Y R
Sbjct: 341 EEGVSISLCEP--EENAYIR 358


>gi|320011360|gb|ADW06210.1| DEAD/DEAH box helicase domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 571

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 127/328 (38%), Gaps = 33/328 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   +      A+++ P   LAQQ  + +  Y     + V
Sbjct: 105 RGRTGSGKTLAFGLALLARTAGRRSEPHAPLALVLVPTRELAQQVTDALTPYATAVNLRV 164

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G M  + +  AL R     A +++ T    +D I+     L      ++DE     
Sbjct: 165 ATVVGGMSISRQSGALRR----GAEVLVATPGRLKDLIERGDCRLDAVSITVLDEAD--- 217

Query: 408 VQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                ++      P V  LL    P  + ++ ++  D +I ++  K     P+   + P 
Sbjct: 218 -----QMADMGFMPQVVALLKQVEPDGQRMLFSATLDKNIDRLV-KMFLTDPVVHSVDPS 271

Query: 466 NRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAI 520
                 +E   L V     KKA        + +   F       +   +   +S    A 
Sbjct: 272 AGAVTTMEHHVLHVADETDKKAVATRIAARDGRVIMFVDTKRGADRFAKRLLASGVRAAA 331

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG  S   +   +D FKNG    L+AT V   GI V D  +++  +        LH+  
Sbjct: 332 LHGGRSQPQRNRTLDQFKNGQVTALVATNVAARGIHVDDLDLVVNVDPPTDHKDYLHR-G 390

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRL 608
           GR  R  E  S + L  P   K   TRL
Sbjct: 391 GRTARAGESGSVVTLVLPD-EKRDMTRL 417


>gi|307279184|ref|ZP_07560242.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
 gi|306504309|gb|EFM73521.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
          Length = 452

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 146/345 (42%), Gaps = 39/345 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT+ QE  I  I +  S       I Q   GSGKT   L+ +   V+      Q VI AP
Sbjct: 28  PTEVQEKLIPIIKKGKSV------IGQSQTGSGKTHTFLLPLMDKVKPTIDEVQIVITAP 81

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q Y+  ++  + +Q  +++ +  +    +++ L ++ H Q H++IGT     D 
Sbjct: 82  SRELANQIYQEAQQLARFSQPEIQV-SNFVGGTDKQRQLNKLKHQQPHVVIGTPGRILDM 140

Query: 389 ----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
               +++ +     +VDE         L +   A    +    A  +P  L +       
Sbjct: 141 MNEQALKVHTAFAFVVDE-----ADMTLDMGFLAEVDQI----AGRLPEKLQMLVFSATI 191

Query: 445 ISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
             K+  +P  +K    P+   I P   I E I+   ++ ++GK +  I  Q+        
Sbjct: 192 PEKL--RPFLKKYLENPVIEHIKPKAVISETIDNW-LISTKGKNSNQIIYQLLTIGHPYL 248

Query: 500 ---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +  +R + + ++       +A IHG ++  +++ VM   +N   + ++AT +   
Sbjct: 249 AIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAAR 308

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GID+   S +I     H     +H++ GR GR     + I LY P
Sbjct: 309 GIDIEGVSHVINAEVPHELDFFIHRV-GRTGRNGLNGTAITLYSP 352


>gi|308071529|ref|YP_003873134.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681]
 gi|305860808|gb|ADM72596.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681]
          Length = 481

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 131/317 (41%), Gaps = 28/317 (8%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKT    I +   V   E   QA+I+ P   LA Q  E I    +  +I   
Sbjct: 45  VAKSQTGSGKTAAYGIPICELVDWNENKPQALILTPTRELALQVTEDITNIGRFKRIKAT 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI--VDEQHR 405
            + G  P   ++  L++    + H+ +GT     D I+   L       LVI   DE   
Sbjct: 105 PLYGKHPFHIQKAELKQ----RTHVAVGTPGRVLDHIERGTLSLDRIAYLVIDEADEMLN 160

Query: 406 FG-VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DISKITEKPAG--RKPIKTV 461
            G ++Q   + Q   +  V ++ +   P  +   S   + D  KI  K  G     I   
Sbjct: 161 MGFIEQVQSIIQALPSDRVTMLFSATFPEDVATLSRKYMNDPVKIEIKATGITTATIDHS 220

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           +I +   D++     +++ E   +  I  + +E  ++ FR++ +               I
Sbjct: 221 LIQVKESDKLALLQDLLIVENPDSCIIFCRTQENVDTLFRALAD--------LEYPCDRI 272

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG M   ++  VM++F+ G  + LIAT V   GID+ + + +I  +      + +H+  G
Sbjct: 273 HGGMEQDERFEVMNAFRRGQFRYLIATDVAARGIDITNITHVINYDIPLEKESYVHRT-G 331

Query: 582 RVGRGEEISSCILLYHP 598
           R GR  +    I L  P
Sbjct: 332 RTGRAGKTGKAISLITP 348


>gi|301612896|ref|XP_002935944.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 isoform 1
           [Xenopus (Silurana) tropicalis]
          Length = 1049

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNG CKLL+AT+V   G+DV    ++I     +     +H+  
Sbjct: 648 LHGGIDQYDRDSIINDFKNGVCKLLVATSVAARGLDVKQLILVINYACPNHYEDYVHRA- 706

Query: 581 GRVGRG 586
           GR GR 
Sbjct: 707 GRTGRA 712


>gi|297563397|ref|YP_003682371.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847845|gb|ADH69865.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 462

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 136/331 (41%), Gaps = 46/331 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            GSGKTL   +A+ A ++          AV++AP   LAQQ  + +  Y ++  +    +
Sbjct: 98  TGSGKTLAFGLALLAQLDGRKAEPRRPLAVVLAPTRELAQQVADALAPYARSVGVHATTV 157

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR----- 405
            G MP + + +AL +       +++ T    +D ++    +L      ++DE  +     
Sbjct: 158 VGGMPISRQSRALRQ----GVELVVATPGRLRDLMERGDCVLDQVEVTVLDEADQMTDMG 213

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           F  Q    L Q       +L +AT + R   TLV   L D  +  +         ++  +
Sbjct: 214 FMPQVTAILQQVPADGRRMLFSAT-LDRNVDTLVRRFLNDPVVHSVDLSEGAVSTMEHHV 272

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IA 519
           + ++  D+     ++   +G+   ++          + +  V+R   + EH  ++    A
Sbjct: 273 MHVSHADKQDVVTRIAARDGRVIMFL----------DTKRAVDR---MAEHLLANGVLAA 319

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI--DVVDASIIIIENAEHFGLAQLH 577
            +HG  S   +   +D FK G    L+AT V   GI  D +D  + I    +H     LH
Sbjct: 320 PLHGGRSQPQRTRTLDQFKRGAVTALVATNVAARGIHVDGLDLVVNIDPPTDHKDY--LH 377

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           +  GR  R  E  S + L  P   +   TRL
Sbjct: 378 R-GGRTARAGEAGSVVTLVLPS-QRRDMTRL 406


>gi|258578393|ref|XP_002543378.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237903644|gb|EEP78045.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 958

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 35/179 (19%)

Query: 500 FRSVVERFNSLHEHF----------TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           F   + R  +LH             +S IA++H  +SD  +  VM  F+ G   +LI T 
Sbjct: 734 FTQTISRAVALHSELMYDIPPEAGGSSRIAVLHSELSDSRRSDVMAGFRKGEIWILITTD 793

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR-- 607
           ++  G+D    + ++  +  +   A +H++ GR GR        + +        YT+  
Sbjct: 794 LLARGVDFKGINGVVNYDIPNSSAAYVHRV-GRTGRAGRDGGVAVTF--------YTKED 844

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           +S +KN  +  + A E L+  +EGE +       PK+L+      D+L  +++KD + +
Sbjct: 845 ISYVKNIAN-VISASEKLRGTEEGERI-------PKWLL------DALPSLSKKDKEDL 889


>gi|188590398|ref|YP_001920680.1| ATP-dependent RNA helicase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500679|gb|ACD53815.1| ATP-dependent RNA helicase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 382

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 136/310 (43%), Gaps = 29/310 (9%)

Query: 303 GSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GSGKTL  L+ +   +       QA+I+AP   L  Q    IK  + N+ I V+ + G +
Sbjct: 50  GSGKTLAYLLPIFERINTETKDIQAIILAPTHELVMQIEAQIKLLSDNSGINVKSL-GII 108

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRFGVQQRLKL 414
              +    ++++   + HII+G+     D I+  K+       +++DE       +R ++
Sbjct: 109 GDVNINNQIKKLKEVKPHIIVGSTGRVLDLIRKKKITAHTIKTIVIDEVDNLLDPKRAQI 168

Query: 415 TQ---KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINR 467
            +   K T     LM  +      ++ SL ++    +  K  G+  I      V +  +R
Sbjct: 169 VKDIIKTTMRDRQLMAFSASITPEIVDSLKELMKDPLIVKSQGKSSINPNISHVYVKCDR 228

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
            D+     K++ +E  K   I   + + K+    S+      L+ H     A+  G +S 
Sbjct: 229 RDKFEVLRKIIAAEDPKRALIF--VNDNKDIELTSL-----KLNYHNRECFAM-SGSISK 280

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE-HFGLAQLHQLRGRVGRG 586
            ++++ +DSFK G  K+L+++ V   G+D+ D + +   N +    L +     GR  RG
Sbjct: 281 EERKNAIDSFKTGKIKILVSSDVSARGLDITDITHVF--NLDLPLKLDEYLHRSGRTARG 338

Query: 587 EE--ISSCIL 594
                S CI+
Sbjct: 339 NAKGTSICIV 348


>gi|71051290|gb|AAH99392.1| Eif4a1 protein [Mus musculus]
          Length = 405

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 72  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 131

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 132 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 188

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 189 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 233

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 234 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 293

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 294 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 344


>gi|56964675|ref|YP_176406.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
 gi|56910918|dbj|BAD65445.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
          Length = 378

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 140/320 (43%), Gaps = 38/320 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   G+GKTL  L+ + A ++      QAVI+AP   LA Q  + +K+ T +T I   
Sbjct: 44  VARSQTGTGKTLAYLMPLLAKIDVSKQATQAVIVAPSQELAMQIVQVLKETTDHTTITSM 103

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGV 408
              G    A+ ++ +E++  G+ HI++GT     + ++  K+ L      ++DE  RF  
Sbjct: 104 PFIGG---ANIKRQIEKLKKGKPHIVVGTPGRLLELVRLKKIKLAMVHTCVIDEVDRFVE 160

Query: 409 QQRLKLTQK-----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK----PAGRKPIK 459
            ++   T++           L ++AT   +     +L    I +I  K    PA  + + 
Sbjct: 161 DEQWAETEELGKRIGRDAQYLFVSATVPDKLEEKLALFAPAIKRIEAKGSLVPASVEHLC 220

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE--HFTSS 517
             +   NR+D  + R K++ +E          IE  K   F + ++R N   E   F   
Sbjct: 221 LWVEARNRVD--VTR-KLIAAE---------NIE--KGIVFVNHLQRLNETVEKLRFRKV 266

Query: 518 IAI-IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            A+ +       ++E  + SF      +L+AT V   G+D+   + II   A     + L
Sbjct: 267 KAVALSSESGKQEREKAIASFSANEAHILVATDVAARGLDLEGVTHIIQLEAPSDPDSYL 326

Query: 577 HQLRGRVGRGEEISSCILLY 596
           H+  GR GR +     + L+
Sbjct: 327 HRA-GRTGRMQRSGKVVTLF 345


>gi|327356974|gb|EGE85831.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 798

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 146/370 (39%), Gaps = 79/370 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------------E 319
           P+  Q +AI   LQ     NR L I     GSGKT   L+ +   +              
Sbjct: 380 PSPIQRAAIPIALQ-----NRDL-IGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEWRRN 433

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAH---GQ 375
            G  A+I+AP   LAQQ     KK++      +V I+ G+        +LE  A+     
Sbjct: 434 DGPYAIILAPTRELAQQIELEAKKFSAPLGFNVVSIVGGH--------SLEEQAYSLRNG 485

Query: 376 AHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR----------------FGVQQRLKL 414
           A III T     D I+     + +   VI+DE  R                  V  +   
Sbjct: 486 AEIIIATPGRLVDCIERRMIVFSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNQKPD 545

Query: 415 TQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           T+ A  P  +        R   T++ T+     + +I  K   R  I T+      +D V
Sbjct: 546 TEDAENPQAMSQHIGGKDRYRQTMMYTATMPPAVERIARKYLRRPAIVTIGNIGEAVDTV 605

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----------SIAII 521
            +R++ +  E K+   +   +  ++   FR  +  F ++  +  +          S   +
Sbjct: 606 EQRVEFISGEDKRKKRLAEILSSRE---FRPPIIVFVNIKRNCDAVARDIKNMGYSSVTL 662

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----L 576
           HG  +   +E+ + S +NG   +L+AT +   GIDV D S+++     +F +A       
Sbjct: 663 HGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVV-----NFNMATNIENYT 717

Query: 577 HQLRGRVGRG 586
           H++ GR GR 
Sbjct: 718 HRI-GRTGRA 726


>gi|241896593|ref|ZP_04783889.1| ATP-dependent RNA helicase [Weissella paramesenteroides ATCC 33313]
 gi|241870185|gb|EER73936.1| ATP-dependent RNA helicase [Weissella paramesenteroides ATCC 33313]
          Length = 452

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 145/354 (40%), Gaps = 55/354 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAVEAGGQAVIMAP 329
           PT  Q   I  ILQ  S       + Q   GSGKT   LV +     A     QAVI  P
Sbjct: 25  PTTVQSRLIPVILQGRS------VVGQSQTGSGKTHTFLVPIFQQYDATNQKVQAVITTP 78

Query: 330 IGILAQQHYEFIKK----YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
              LAQQ YE  K+    +T++TQ  + +  G M    + + + ++ + Q  I+IGT   
Sbjct: 79  SRELAQQIYEAAKQLASTFTEDTQPRISLYVGGM---DKSRQIHQLQNKQPQIVIGTPGR 135

Query: 386 FQDSIQYYKL-----ILVIVDEQH---RFGVQQRLKLTQKATAPHV-LLMTATPIPRTL- 435
            +D  Q  +L       ++VDE       G    +     A    + +L+ +  IP+ L 
Sbjct: 136 IKDLYQAGELDIHTATTLVVDEADMTLDLGFLPDVDAIASAMPEDLKMLVFSATIPQKLQ 195

Query: 436 --VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA--YWICPQ 491
             +   L +  I +I        P +TVI P   I  ++   K    E K    Y +   
Sbjct: 196 PFLKKYLSNPVIEEI--------PSETVIAPT--IKNILVGTK---GETKDTLVYNLLTM 242

Query: 492 IEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                   F +   R   L +   S    +A IHG +   +++  M   ++   + ++AT
Sbjct: 243 GNPYLALVFTNTKTRARELTKSLRSRGLKVAEIHGGIQPRERKRTMQQIQHLDYQYVVAT 302

Query: 549 TVIEVGIDVVDASIIIIEN----AEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +   GID+   S+II +      E F    +H++ GR GR     + I +Y+P
Sbjct: 303 DLAARGIDIPGVSLIINDGIPTELEFF----IHRV-GRTGRNGMSGTAITIYNP 351


>gi|223042095|ref|ZP_03612269.1| primosomal protein N' [Actinobacillus minor 202]
 gi|223017107|gb|EEF15545.1| primosomal protein N' [Actinobacillus minor 202]
          Length = 736

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 9/118 (7%)

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQN 347
           +QK     +L G  GSGKT V L  +   ++ G Q +++ P IG+  Q     I+++   
Sbjct: 214 AQKEFGCFLLNGVTGSGKTEVYLQFIEEVLQRGKQVLVLVPEIGLTPQT----IQRFQAR 269

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH 404
             + ++ +  ++ +  R     R  HG++ I+IGT  ALF    Q+  L  +I+DE+H
Sbjct: 270 FNVEIDALHSHLNETERLNVWLRARHGESAIVIGTRSALF---TQFKDLGAIIIDEEH 324


>gi|156976352|ref|YP_001447258.1| ATP-dependent RNA helicase [Vibrio harveyi ATCC BAA-1116]
 gi|156527946|gb|ABU73031.1| hypothetical protein VIBHAR_05125 [Vibrio harveyi ATCC BAA-1116]
          Length = 447

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 149/367 (40%), Gaps = 67/367 (18%)

Query: 302 VGSGKTLVALIAM-------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  ++ M        +      +AVI+AP   LA+Q Y  ++           +
Sbjct: 51  TGSGKTLAFVLPMLHKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLGGLTYDAAL 110

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---F 406
           I G      + KAL R        I+ T     D +++  L L     +++DE  R    
Sbjct: 111 ILGGENFNDQVKALRRYPK----FIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDL 166

Query: 407 GVQQRLKLTQKATAPH----VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           G    L+   KA A H     L+ +AT     L    + DI  S++   P      K + 
Sbjct: 167 GFAPELRRIHKA-AKHRRRQTLMFSAT-----LDHAEVNDI-ASEMLNAP------KRIA 213

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--------ESNFRSVV---------E 505
           I ++      E  K +  +    +++C  ++ K+        E+ +R V+         E
Sbjct: 214 IGVSN-----EEHKDITQK----FYLCDHLDHKEAILERVLEEAEYRQVIIFTATRDDTE 264

Query: 506 RF-NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           R  N L+E    ++A+  G ++   + ++M  F+    K+L+ T V   G+D+   + +I
Sbjct: 265 RLTNKLNEKKLKAVAL-SGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIATVTHVI 323

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
             +        +H++ GR GR       + L  P    +S+ R+      +  F +  ED
Sbjct: 324 NFDMPKHTEEYVHRV-GRTGRAGNKGDAVSLVGPK-DWDSFKRVETYLQQDLNFSVF-ED 380

Query: 625 LKQRKEG 631
           LK + +G
Sbjct: 381 LKGKFKG 387


>gi|31077172|sp|P29562|IF4A1_RABIT RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
          Length = 398

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 65  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 124

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 125 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 181

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 182 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 226

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 227 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 286

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 287 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 337


>gi|326433130|gb|EGD78700.1| eukaryotic initiation factor 4A [Salpingoeca sp. ATCC 50818]
          Length = 473

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 119/297 (40%), Gaps = 54/297 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I+Q   G GKT    I     V+      Q ++++P   LA Q  +  +       + V 
Sbjct: 140 IVQAPSGMGKTATFSIGSLQRVDTTLPSCQLLVLSPTRELAIQTADACQSLGSYVGVRVL 199

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHRFGV 408
            + G      +R AL        H++ GT     H L  DS+   +L  +++DE      
Sbjct: 200 PLIGGQSVRDQRTALREDG---IHVVCGTPGRVKHMLSDDSLDCRQLTTIVLDEADEL-- 254

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
              L+  Q        +    P    +VL +    D+     K   R P+  ++ P    
Sbjct: 255 ---LEYFQDDIYD---VFQFVPRDAQVVLVTATTTDVLLKISKKVLRNPVNILVKP---- 304

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS------------ 516
               E L++   EG + +++  Q    K   + ++ + +NSL+   T             
Sbjct: 305 ----EELRL---EGIQHFFVDVQQHLHK---YPTLCDLYNSLNTAQTVVFVNRRRTALEL 354

Query: 517 ---------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                    ++++IHG M   ++ + +D F++G  ++L+AT V+  GIDV   S++I
Sbjct: 355 EDRLVRDKFAVSVIHGEMEQDERIATLDRFRSGQSRVLVATNVVARGIDVQQVSLVI 411


>gi|302388236|ref|YP_003824058.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302198864|gb|ADL06435.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 471

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 149/351 (42%), Gaps = 56/351 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA----MAAAVEAGG-----Q 323
           PT  QE AI  IL        +L   Q   G+GKT    I     +    E+ G     +
Sbjct: 24  PTPIQEEAIPVILSGRD----LLGCAQ--TGTGKTAAFAIPTIQLLREEKESHGAKQNIR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q YE    Y + T +   ++ G + Q  + + L++    +  I++ T 
Sbjct: 78  ALIVTPTRELALQIYESFNTYGKFTDLKCCVVFGGVSQKPQEEKLKQ----RVDILVATP 133

Query: 384 A-----LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVL 437
                 + Q  +    + ++I+DE  R      +   +K       ++  TP+ + TL+ 
Sbjct: 134 GRLLALIDQKIVNIDHIKILILDEADRMLDMGFIHDVKK-------IIARTPLKKQTLLF 186

Query: 438 TSLGDIDISKITEKPAG---RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++    DI+K+    AG   + P K  I P++   + I +    + +  K   +   +  
Sbjct: 187 SATMPPDIAKL----AGTILKAPAKIEITPVSSTVDTIGQYVYFVDKSNKKDLLLHVL-- 240

Query: 495 KKESNFRSVV---------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            K++N  S +         +R N            IHG  S   ++S +++FKN + ++L
Sbjct: 241 -KDNNIVSALVFTRTKHGADRLNKQLSRNNVIAQAIHGDKSQGARQSALNNFKNKSLRIL 299

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           IAT +   GID+ + + +I  +        +H++ GR GR    G  IS C
Sbjct: 300 IATDIAARGIDIDELTHVINYDLPDIPETYVHRI-GRTGRAGLGGTAISFC 349


>gi|268593400|ref|ZP_06127621.1| primosomal protein [Providencia rettgeri DSM 1131]
 gi|291311097|gb|EFE51550.1| primosomal protein [Providencia rettgeri DSM 1131]
          Length = 732

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ +     V+++
Sbjct: 221 LLAGITGSGKTEVYLSVLENVLAQGKQALVLVPEIGLTPQT----ISRFRERFNAPVDVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   GQ  IIIGT  ALF     + +L ++I+DE+H    +Q+
Sbjct: 277 HSGLNDSERLAVWLRTKQGQNAIIIGTRSALF---TPFARLGIIIIDEEHDSSYKQQ 330


>gi|154497003|ref|ZP_02035699.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC
           29799]
 gi|150273402|gb|EDN00530.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC
           29799]
          Length = 400

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 161/366 (43%), Gaps = 72/366 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I +   G+GKT    I M   ++      QA+++AP   LA Q  + ++   +  + +  
Sbjct: 53  IAKAPTGTGKTFAFGIPMVEHIDPESDAVQALVLAPTRELALQIQDELRDLCEFKEGVRS 112

Query: 354 I-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF- 406
           + + G  P   +   L++  H Q  I++ T     D     +++  K+  V++DE  R  
Sbjct: 113 VCLYGGAPIEKQITTLKK--HPQ--IVVATPGRLMDHMKRRTVKLDKVETVVLDEADRML 168

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
             G    +   L Q  +  ++ L +AT I R +       +DIS + +    R P++ V+
Sbjct: 169 DMGFIHDVTRILDQIKSRKNLGLFSAT-ISREV-------MDISWVYQ----RDPVEIVV 216

Query: 463 IPIN---------RID-----EVIERLKVVLSEG--KKAYWICPQIEEKKESNFRSVVER 506
            P           RID     + +E +  +L+ G  ++A   C         N +++ +R
Sbjct: 217 RPDEENKPDIQQYRIDLEGRGDKLETMVALLTHGGYERAIAFC---------NTKNMTDR 267

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII--- 563
            + L +    +   IHG +    +E  + +F+ G  ++L+AT V   G+D+ D  ++   
Sbjct: 268 LSGLLQMRGITAQAIHGDIQQRIREKTLQAFREGKMRVLVATDVAARGLDIDDVDVVFNY 327

Query: 564 -IIENAEHFGLAQLHQLRGRVGRGEE--------ISSCILLYHPPLSKNSYTRLSVLKNT 614
            + +  E++    +H++ GR GR +         +     +    ++KN+   ++VLK  
Sbjct: 328 DVPDEIEYY----IHRI-GRTGRAKRHGVAYSLVVGITEQMKMEQIAKNTKADITVLKYD 382

Query: 615 EDGFLI 620
           +DG L+
Sbjct: 383 KDGCLL 388


>gi|91082293|ref|XP_973907.1| PREDICTED: similar to DEAD-box helicase Dbp80 [Tribolium castaneum]
 gi|270007465|gb|EFA03913.1| hypothetical protein TcasGA2_TC014047 [Tribolium castaneum]
          Length = 458

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 136/327 (41%), Gaps = 68/327 (20%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+K QE+A+  +L +  Q      I Q   G+GKT   ++AM + V+A     Q + ++
Sbjct: 93  APSKIQETALPTLLANPPQN----LIAQAQSGTGKTAAFVLAMLSRVDASLKYPQVLCLS 148

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E         +   EI    M  A R + + R +H   HIIIGT     D
Sbjct: 149 PTYELAIQTGEVAAHM---AKFCPEI---EMKYAVRGEEVSRGSHLTEHIIIGTPGKVLD 202

Query: 389 SIQYY------KLILVIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               +      KL + ++DE        G Q +     K   P+  +M           +
Sbjct: 203 WALKFRVFDLKKLTVFVLDEADVMIATQGHQDQCIRIHKNLGPNCQMM---------FFS 253

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +  D  I +  E          +I+P + I   ++R +  L   ++ Y  C   +EK   
Sbjct: 254 ATYDQQIMEFAE----------MIVP-DSITIRLKREEESLDNIQQYYVKCSGPQEK--- 299

Query: 499 NFRSVVERFNSL---------HEHFTSS------------IAIIHGRMSDIDKESVMDSF 537
            + +V   + ++         H   T+S            +A++ G ++   + +V+D F
Sbjct: 300 -YNAVTNIYGTVGVGQAIIFCHTRRTASWLAEKMSKDGHAVAVLTGDLTVEQRINVLDRF 358

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIII 564
           ++G  K+LI T V+  GIDV   +I++
Sbjct: 359 RSGQEKVLITTNVLSRGIDVEQVTIVV 385


>gi|127512383|ref|YP_001093580.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126637678|gb|ABO23321.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 441

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 137/340 (40%), Gaps = 56/340 (16%)

Query: 302 VGSGKTL---VALIAMAAAVEAGGQ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKT    + L+       AGG     A+++ P   LAQQ  +    Y        ++
Sbjct: 70  TGSGKTAAFALPLLQKLVGQRAGGGNHVGALVLVPTRELAQQVADSFISYGAELAPRAKV 129

Query: 355 IT--GNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR-- 405
           I   G +    +  AL     G A I++ T       L  ++++  +L  +++DE  R  
Sbjct: 130 IAVFGGVSVNSQMLAL----RGGADILVATPGRLLDLLGSNAVKLSQLKALVLDEADRML 185

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
             G  + L   L Q       LL +AT     L LT+    D  +I  + A    I+  +
Sbjct: 186 NLGFTEELGEILKQLPDQKQTLLFSATFPEEVLSLTAKLLTDPVEIQMQEAQSADIEQRV 245

Query: 463 IPINRIDE---VIERLKV-------VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             +NR ++   + E +KV       V +  K++   C  + +K E   R +         
Sbjct: 246 YTVNRSNKTALLAELIKVRQWRQVLVFASAKRS---CDHLAQKLEK--RGI--------- 291

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               S  + HG  +   +  V+D FKNG   +LIAT +   GID+    ++I        
Sbjct: 292 ----SAQVFHGDKAQGARSRVLDGFKNGEITVLIATDIAARGIDIDKLPVVINFELPRSP 347

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              LH++ GR GR  E    I L    +S + Y    V++
Sbjct: 348 ADYLHRI-GRSGRAGETGEAISL----ISHDEYHHFKVIE 382


>gi|301612898|ref|XP_002935945.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 isoform 2
           [Xenopus (Silurana) tropicalis]
          Length = 1024

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FKNG CKLL+AT+V   G+DV    ++I     +     +H+  
Sbjct: 623 LHGGIDQYDRDSIINDFKNGVCKLLVATSVAARGLDVKQLILVINYACPNHYEDYVHRA- 681

Query: 581 GRVGRG 586
           GR GR 
Sbjct: 682 GRTGRA 687


>gi|281352202|gb|EFB27786.1| hypothetical protein PANDA_013869 [Ailuropoda melanoleuca]
          Length = 400

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 67  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 126

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 127 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 183

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 184 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 228

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 229 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 288

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 289 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 339


>gi|295660379|ref|XP_002790746.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226281299|gb|EEH36865.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 408

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 147/354 (41%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVLRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + + ++ HGQ H++ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVG---EDIRKLDHGQ-HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT +P      
Sbjct: 157 MIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT-LP------ 209

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E 
Sbjct: 210 ----YDVLDMTTKFMT-DPVRILV----------KRDELTL-EGLKQYFIAV---EKEEW 250

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 251 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 308

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 309 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 357


>gi|54696620|gb|AAV38682.1| eukaryotic translation initiation factor 4A, isoform 1 [synthetic
           construct]
 gi|61367705|gb|AAX43035.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
          Length = 407

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|76253275|emb|CAH61467.1| Pl10-related protein [Rana lessonae]
          Length = 687

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 87/413 (21%), Positives = 164/413 (39%), Gaps = 100/413 (24%)

Query: 219 EWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG-------------KIAQK 264
           +W+ P A       EL +G    +     F+K   IP+   G              + + 
Sbjct: 178 DWSKPLAPNDRVEQELFSGSNTGI----NFEKYDDIPVEATGSNCPPHIESFHDVNMGEI 233

Query: 265 ILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           I+ NI  +    PT  Q+ AI  I+     K  ++   Q   GSGKT   L+ + + + A
Sbjct: 234 IMGNIQLTRYTRPTPVQKHAIPIIID----KRDLMACAQ--TGSGKTAAFLLPILSQIYA 287

Query: 321 GGQ---------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            G                      ++++AP   LA Q YE  +K+   +++   ++ G  
Sbjct: 288 DGPGDAMKHLKDNGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSKVRPCVVYGGA 347

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------- 406
               + + LER      H+++ T     D ++  K+ L     +++DE  R         
Sbjct: 348 DIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQ 403

Query: 407 -------------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS--KITEK 451
                        GV+Q +  +  AT P  + + A       +  ++G +  +   IT+K
Sbjct: 404 IRRIVEQDTMPPKGVRQTMMFS--ATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQK 461

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                     ++ +  +D+    L ++ + GK +  +   +E KK ++    +E F   H
Sbjct: 462 ----------VVWVEEMDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---ALEDF-LYH 506

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           E +  +   IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 507 EGY--ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 557


>gi|294053581|ref|YP_003547239.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293612914|gb|ADE53069.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 373

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 149/369 (40%), Gaps = 46/369 (12%)

Query: 251 IGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           +G+P + VEG  A  I       PT  Q   I  +L+D S       I Q   G+GKT  
Sbjct: 9   MGVPDDLVEGISALGI-----HEPTPIQTKVIPLLLEDQSD-----LIAQAQTGTGKTAA 58

Query: 310 ALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHR 364
             + +   V+    G QA+I+AP   LA+Q  + + ++T+    ++ VE+  G      +
Sbjct: 59  FGLPLLTKVDPSKEGIQALIVAPTRELAKQIGKQLFRFTKFSKKKVFVEVTAGGDKIEIQ 118

Query: 365 RKALERIAHGQAHIIIGTHALFQD----------SIQYYKLILVIVDEQHRFGVQQRL-- 412
            + L+R       I++ T     D          S+QY  L+L   DE    G +  L  
Sbjct: 119 AERLQR----PTQIVVATPGRLMDLLELNALNLESVQY--LVLDEADEMLSMGFRAELAK 172

Query: 413 --KLTQKATAPHVLLMTATPIPRTLVLTSLG-DIDISKITEKPAGRKPIKTVIIPINRID 469
             KLT++     +   T     + L   +L  D  + K+ +K    + I+      +R D
Sbjct: 173 IFKLTKRRRGTWLFSATFQDKVKRLAADNLSPDARMLKVAKKEVVNRNIEHSFAVCSRED 232

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           +    L  + S+G +   I  +         ++   R   +       + ++ G +S  D
Sbjct: 233 KDEFILDYLKSKGTQRGMIFVRT--------KAGAIRLGEVLRDAGVPVGVLQGDLSQRD 284

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           ++ VM  FK    ++L+AT V   GID+   + +I       G    H+  GR  R  + 
Sbjct: 285 RDKVMRIFKRKESQVLVATDVAARGIDIEALAFVIQHQLPDAGQYYTHRA-GRTARAGKR 343

Query: 590 SSCILLYHP 598
              + L  P
Sbjct: 344 GVSLTLIEP 352


>gi|74654532|sp|Q9Y7C4|ROK1_CANAL RecName: Full=ATP-dependent RNA helicase CHR1
 gi|4589366|gb|AAD26468.1| DEAD box RNA helicase [Candida albicans]
          Length = 578

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 11/139 (7%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++ +IH   +   +E V+  FKNG   +LI T V+  G+D    +++I  +      A +
Sbjct: 404 NVDVIHAERTPKQREEVIKRFKNGDIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYV 463

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT--EDGFLIAEEDL--------K 626
           H++ GR GRG +    +  +     K     L+V+K +   DG+    ED+        K
Sbjct: 464 HRI-GRTGRGGKAGKAVTFFTKEDDKAIKPILNVMKQSGCNDGYSQWMEDMGKLSKKEKK 522

Query: 627 QRKEGEILGIKQSGMPKFL 645
           Q K  EI   K S +PK +
Sbjct: 523 QIKTHEIQRKKISTVPKVI 541


>gi|66522071|ref|XP_624210.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Apis mellifera]
          Length = 772

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 130/319 (40%), Gaps = 40/319 (12%)

Query: 302 VGSGKT-------LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT       LV ++      E  G   +I+AP   L+QQ Y+  +K+ +   + V 
Sbjct: 301 TGSGKTAAFIWPMLVHIMDQRELKEGDGPIGLILAPTRELSQQIYQEARKFGKVYNVQVC 360

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
              G   +  + KALE    G A I++ T     D     +    ++  +++DE  R   
Sbjct: 361 CCYGGGSKWEQSKALE----GGAEIVVATPGRIIDLVKMKATNLTRVTFLVLDEADRMFD 416

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP---IKT 460
            G + +++       P    LL +AT   R   L      D  +I +   G       + 
Sbjct: 417 MGFEPQVRSICNHVRPDRQTLLFSATFKKRVEKLARDVLTDPVRIVQGDVGEANADVTQH 476

Query: 461 VII----PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           VI+    P  +   +++ L   LS G    ++  ++  ++ +N   + E F+ L      
Sbjct: 477 VIVFNNNPTGKWTWLLQNLIEFLSAGSLLIFVTKKLNAEELANNLKLKE-FDVL------ 529

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
              ++HG M  I++  V+ +FK      L+AT V   G+D+     ++  +         
Sbjct: 530 ---LLHGDMDQIERNKVITAFKKKEVSTLVATDVAARGLDIPHIRTVLNYDVARDIDTHT 586

Query: 577 HQLRGRVGRGEEISSCILL 595
           H++ GR GR  E  +   L
Sbjct: 587 HRI-GRTGRAGEKGTAYTL 604


>gi|24584994|ref|NP_609888.2| CG10333 [Drosophila melanogaster]
 gi|22946759|gb|AAF53680.2| CG10333 [Drosophila melanogaster]
 gi|60677727|gb|AAX33370.1| RH55640p [Drosophila melanogaster]
          Length = 822

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 146/369 (39%), Gaps = 64/369 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA------------AVE 319
            PT  Q  AI   LQ     NR + I   + GSGKTL  LI + +             V+
Sbjct: 416 EPTPIQRQAIPIGLQ-----NRDI-IGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVD 469

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G  A+IMAP   LAQQ  E   K+ Q   I   ++ G +    R +   R+  G   I+
Sbjct: 470 QGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGL---SREEQGFRLRLG-CEIV 525

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQ--------RLKLTQKAT 419
           I T     D ++   L+L     +++DE  R         VQ+         LK   +  
Sbjct: 526 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEA 585

Query: 420 APHVLLM----TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                LM    T     +T++ T+     + ++  +   R+P    I  + +  E  E++
Sbjct: 586 EDETKLMENFYTKKKYRQTVMFTATMPPAVERLA-RTYLRRPATVYIGSVGKPTERTEQI 644

Query: 476 KVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             ++ E  K   +   +  K +       N +   +      E    +   +HG      
Sbjct: 645 VYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQ 704

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVG 584
           +E  + + K+G   +L+AT V   GID+ D S++I     ++ +A+      H++ GR G
Sbjct: 705 REYALAALKSGAKDILVATDVAGRGIDIKDVSLVI-----NYDMAKTIEDYTHRI-GRTG 758

Query: 585 RGEEISSCI 593
           R  +    I
Sbjct: 759 RAGKTGCAI 767


>gi|320167743|gb|EFW44642.1| eIF4AIII protein [Capsaspora owczarzaki ATCC 30864]
          Length = 413

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 147/348 (42%), Gaps = 73/348 (20%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  Q+ AI+ IL     K R + I Q   G+GKT    I+    VE      QA++++P
Sbjct: 60  PSAIQQRAIRPIL-----KGRDV-IAQAQSGTGKTATFSISALNCVEPATRETQALVLSP 113

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ  + +        +      G +  A   K L+   +GQ H++ GT     D 
Sbjct: 114 TRELAQQIQKVVLALGDYMGVQCHACIGGVSVAEDIKKLD---YGQ-HVVSGTPGRVFDM 169

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        IL   DE    G ++++    +   P   V++++AT     L +T+
Sbjct: 170 IKRRHLRTRNIKMLILDEADEMLSRGFKEQIYDIYRYLPPTTQVVIVSATLPHEVLEITT 229

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                              K +  PI RI  +++R ++ L EG K ++I  + EE K   
Sbjct: 230 -------------------KFMTDPI-RI--LVKRDELTL-EGIKQFFISVEREEWKFDT 266

Query: 498 ----------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                            N R  VE           +++ +HG M   +++++M  F++G 
Sbjct: 267 LCDLYDTLIITQAVIFCNTRRKVEFLAEEMAKANFTVSHMHGEMDQKERDTIMKQFRSGA 326

Query: 542 CKLLIATTVIEVGIDVVDASIIIIE----NAEHFGLAQLHQLRGRVGR 585
            ++LI T +   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 327 TRVLITTDLWARGIDVQQVSLVINYDLPINRENY----IHRI-GRSGR 369


>gi|308485730|ref|XP_003105063.1| hypothetical protein CRE_20763 [Caenorhabditis remanei]
 gi|308257008|gb|EFP00961.1| hypothetical protein CRE_20763 [Caenorhabditis remanei]
          Length = 401

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 144/339 (42%), Gaps = 53/339 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AI  IL     K R + I Q   G+GKT    I++   ++      QA+I++P
Sbjct: 49  PSAIQQRAIPAIL-----KARDV-IAQAQSGTGKTATFSISVLQTLDTQVRETQALILSP 102

Query: 330 IGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
              LA Q  + +       N Q    I   N+ +  R+     + +GQ H++ GT     
Sbjct: 103 TRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRK-----LDYGQ-HVVSGTPGRVF 156

Query: 388 DSIQYYKL------ILVI--VDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVL 437
           D I+   L      +LV+   DE    G +++L    +   P   V+L++AT     L +
Sbjct: 157 DMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEM 216

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           TS    D            PI+   I + R +  +E +K       K  W    + +  +
Sbjct: 217 TSKFMTD------------PIR---ILVKRDELTLEGIKQFFVAVDKEEWKFDTLIDLYD 261

Query: 498 S----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +          N R  V+      +    +++ +HG M   D++ VM  F+ GT ++LI+
Sbjct: 262 TLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLIS 321

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGR 585
           T V   G+DV   S++ + N +     +L+  R GR GR
Sbjct: 322 TDVWARGLDVPQVSLVSVINYDLPNNRELYIHRIGRSGR 360


>gi|226291622|gb|EEH47050.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28
           [Paracoccidioides brasiliensis Pb18]
          Length = 443

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 147/365 (40%), Gaps = 69/365 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------------E 319
           P+  Q +AI   LQ     NR L I     GSGKT   L+ +   +              
Sbjct: 25  PSPIQRAAIPIALQ-----NRDL-IGVAVTGSGKTAAFLLPLLVYIGELPRLDEFEWRRN 78

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAH---GQ 375
            G  A+I+AP   LAQQ     KK++      +V I+ G+        +LE  A+     
Sbjct: 79  DGPYAIILAPTRELAQQIEIEAKKFSTPLGFNVVSIVGGH--------SLEEQAYSLRNG 130

Query: 376 AHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKL------------- 414
           A III T     D I+   ++L     VI+DE  R    G ++ +               
Sbjct: 131 AEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVANEKPD 190

Query: 415 TQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           T+ A  P  +        R   T++ T+     + +I  K   R  I T+      +D V
Sbjct: 191 TEDAENPQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNVGEAVDTV 250

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----------SIAII 521
            +R++ V  E K+   +   +  ++   FR  +  F ++  +  +          S   +
Sbjct: 251 EQRVEFVSGEDKRKKRLAEILASRE---FRPPIIVFVNIKRNCDAVARDIKNMGYSSVTL 307

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG  +   +E+ + S +NG   +L+AT +   GIDV D S+++  N      +  H++ G
Sbjct: 308 HGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRI-G 366

Query: 582 RVGRG 586
           R GR 
Sbjct: 367 RTGRA 371


>gi|223056226|gb|ACM80365.1| vasa [Asterias forbesi]
          Length = 715

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 90/424 (21%), Positives = 169/424 (39%), Gaps = 89/424 (20%)

Query: 246 QFKKEIGIPINVEGK-------------IAQKILRNIPFS----PTKSQESAIKDILQDM 288
            F K   IP+ V G+             ++ ++ RN+  +    PT  Q+  I  I    
Sbjct: 240 NFDKYYDIPVEVTGREPPKCINSFDEAQLSPEVRRNVTKAKYDRPTPVQKYGIPII---- 295

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQ 336
           +    ++   Q   GSGKT   L+ +   +   G            Q +I++P   L  Q
Sbjct: 296 NSGRDLMACAQ--TGSGKTAAFLLPIXTGMLNNGITGSSFSDXQEPQCIIVSPTRELTSQ 353

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            Y+   K+ ++T +   +I G     H+ K +ER      H+ + T     D I   K+ 
Sbjct: 354 IYKXAYKFARDTILRPVVIYGGTSVXHQLKEVER----GCHLXVATPGRLMDFINRGKVK 409

Query: 397 L-----VIVDEQHR-----FGVQ--------------QRLKLTQKATAPHVLLMTATPIP 432
           +     +++DE  R     FG +              +R  L   AT P+ +   A    
Sbjct: 410 VNNCKFLVLDEADRMLDMGFGPEMERLIYXPDMPXKGERQCLMFSATFPNEVXEKAAEYL 469

Query: 433 RTLVLTSLGDID--ISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           +  +  ++G +    S IT+     G+   K  ++ + +  +  +R  V           
Sbjct: 470 QDYLFLTVGRVGGAASDITQSVLEVGQYGKKDQLLALLQAQDATDRTLVF---------- 519

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +E K+ ++F + V    S  E  T+SI   HG     ++E  +  F++G   +L+AT
Sbjct: 520 ---VETKRSADFXASVL---SQSEFPTTSI---HGDREQREREEALADFRSGRAPVLVAT 570

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           +V   G+D+ +   ++  +        +H++ GR GR   +      Y P  SK+S +  
Sbjct: 571 SVAARGLDIPNVKHVVNYDLPSGIDEYVHRI-GRTGRVGNLGKATSFYDP--SKDSQSAR 627

Query: 609 SVLK 612
           +++K
Sbjct: 628 ALIK 631


>gi|218900583|ref|YP_002448994.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|218541686|gb|ACK94080.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
          Length = 481

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 134/326 (41%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID-ISKITEKPAGRKPIKTVI 462
             F  Q    + +  T    +L +AT +P         D++ +S+          IK   
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPE--------DVEKLSRTYMNSPTHIEIKAAG 211

Query: 463 IPINRID----EVIERLK------VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           I  ++I+    E IE  K      V + E   +  I  + +E  +  +R + +R N   +
Sbjct: 212 ITTDKIEHTLFEAIEDEKFSLLKDVTMIENPDSCIIFCRTQENVDHVYRQL-KRANYPCD 270

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                   IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +     
Sbjct: 271 K-------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEK 323

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
            + +H+  GR GR       I    P
Sbjct: 324 ESYVHRT-GRTGRAGNSGKAITFITP 348


>gi|161613874|ref|YP_001587839.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168230079|ref|ZP_02655137.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194471340|ref|ZP_03077324.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|161363238|gb|ABX67006.1| hypothetical protein SPAB_01610 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194457704|gb|EDX46543.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205335550|gb|EDZ22314.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 457

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 138/326 (42%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI------ 399
              + G  P   +R +L+       HII+ T     D +Q   +      ILV+      
Sbjct: 105 T--LCGGQPFGAQRDSLQH----APHIIVATPGRLLDHLQKETVSLDALHILVMDEADRM 158

Query: 400 --------VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                   +DE  RF  + R  L   AT P  +   +  + +  +      I+I  +   
Sbjct: 159 LDMGFSDAIDEVIRFAPETRQTLLFSATWPEAIAAISGRVQQQPI-----RIEIDTVDAL 213

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           PA  +             E I  L+ +LS+ + A  +   +    + + ++V +  N++ 
Sbjct: 214 PAIEQQFFE-----TSAHEKISLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALNAVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 Q---SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELVVNYELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFC 345


>gi|156089485|ref|XP_001612149.1| eukaryotic translation initiation factor 4A [Babesia bovis T2Bo]
 gi|154799403|gb|EDO08581.1| eukaryotic translation initiation factor 4A, putative [Babesia
           bovis]
          Length = 402

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 147/355 (41%), Gaps = 57/355 (16%)

Query: 260 KIAQKILRNIPFS-----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           K+ + +LR I +S     P+  Q+  IK I+++         I Q   G+GKT    IA 
Sbjct: 35  KLNEDLLRGI-YSYGFERPSAIQQRGIKPIIENHDT------IGQAQSGTGKTATFSIAA 87

Query: 315 AAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKAL 368
              ++      Q +I+AP   LAQQ  + +       ++      G        H+ KA 
Sbjct: 88  LQLIDYSVVSCQVLILAPTRELAQQIQKVVLALGDYLKVQCHACVGGTIVRDDVHKLKA- 146

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRF---GVQQRLKLTQKATA 420
                   H+++GT     D I    L+     L I+DE       G + ++    +   
Sbjct: 147 ------GVHMVVGTPGRVYDMIDKKALLTNKIKLFILDEADEMLSRGFKGQIHEVFRRMP 200

Query: 421 P--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKV 477
           P   V L +AT     L LT+       K    P      K +++  + +  E I++  V
Sbjct: 201 PDVQVALFSATMPNEILELTT-------KFMRSP------KRILVKKDELTLEGIKQFYV 247

Query: 478 VLS-EGKKAYWICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           ++  E  K   +C   E           N R  V+   S  +    +++ +HG MS  ++
Sbjct: 248 MIDKEEYKFDTLCDLYESVTITQAIIYCNTRRKVDMLTSKMQERDFTVSSMHGDMSQNER 307

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           + +M  F++G+ ++LI T ++  GIDV   S++I  +        +H++ GR GR
Sbjct: 308 DLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPMSPDNYIHRI-GRSGR 361


>gi|134057099|emb|CAK44387.1| unnamed protein product [Aspergillus niger]
          Length = 491

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 142/345 (41%), Gaps = 65/345 (18%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    ++++ +   V    QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVVRESQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G     +  + + ++ +GQ H++ GT     D
Sbjct: 101 PTRELATQIQSVIMALGDYMNVQCHACIGG---TNIGEDIRKLDYGQ-HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT +P  ++  
Sbjct: 157 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT-LPYDVL-- 213

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
              D+    +T+      P++ ++          +R ++ L EG K Y+I  + EE K  
Sbjct: 214 ---DMTTKFMTD------PVRVLV----------KRDELTL-EGIKQYFIAVEKEEWKFD 253

Query: 498 -----------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
                             N R  V+           +++ +HG M   +++S+M  F+ G
Sbjct: 254 TLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQG 313

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
             ++LI+T V   GIDV   S++I  +        +H++ GR GR
Sbjct: 314 NSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRI-GRSGR 357


>gi|302503157|ref|XP_003013539.1| hypothetical protein ARB_00357 [Arthroderma benhamiae CBS 112371]
 gi|291177103|gb|EFE32899.1| hypothetical protein ARB_00357 [Arthroderma benhamiae CBS 112371]
          Length = 812

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 130/332 (39%), Gaps = 57/332 (17%)

Query: 302 VGSGKTLVALIAMAAAVEA-------------GGQAVIMAPIGILAQQ-HYEFIKKYTQN 347
            GSGKT   L+ +   + +             G  A+I+AP   LAQQ   E +K     
Sbjct: 415 TGSGKTAAFLLPLLVYISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPL 474

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHG---QAHIIIGTHALFQDSIQYYKLIL-----VI 399
              +V I+ G+        +LE  A+     A III T     D I+   L+L     VI
Sbjct: 475 NFNVVSIVGGH--------SLEEQAYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVI 526

Query: 400 VDEQHR----------------FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSL 440
           +DE  R                  V      T++A     +        R   T++ T+ 
Sbjct: 527 MDEADRMIDLGFEEPVNKILDALPVSNEKPDTEEAENAQAMSQHIGGKDRYRQTMMYTAT 586

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
               + +I  K   R  I T+      +D V +R++ V  E K+   +   +  ++    
Sbjct: 587 MPSAVERIARKYLRRPAIVTIGNIGEAVDTVEQRVEFVAGEDKRKKRLAEILTSREYRPP 646

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N +   +      +H   S   +HG  +   +E+ + S +NG+  +L+AT +   
Sbjct: 647 IIVFVNIKRNCDAVARDIKHMGFSAVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGR 706

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           GIDV D S+++  N      +  H++ GR GR
Sbjct: 707 GIDVPDVSLVVNFNMATNIESYTHRI-GRTGR 737


>gi|224052117|ref|XP_002190981.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 708

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 135/339 (39%), Gaps = 61/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   Q          +++ P   LA Q  +  K  T+ 
Sbjct: 169 IAQARTGTGKTFSFAIPLIEKLQGESQERRRGRPPKVLVLCPTRELANQVAKDFKDITR- 227

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +   ++ +  G   I++GT    +D +Q  KL L     V++DE
Sbjct: 228 -KLTVGCFYGGTPYNGQ---IDLMRSG-IDILVGTPGRIKDHLQNGKLDLTKVKHVVLDE 282

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTAT------PIPRTLVLTSLGDID-I 445
             +         V+  L++  K  +   P  LL +AT       + +  + T    ID I
Sbjct: 283 VDQMLDMGFAEQVEDILRVAYKKDSEDNPQTLLFSATCPHWVYDVAKKYMKTRYEQIDLI 342

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K T+K A                  +E L +     ++A  I   I+    S  R++V 
Sbjct: 343 GKKTQKAA----------------TTVEHLAIECHWSQRAAVIGDVIQVYSGSQGRTIVF 386

Query: 505 ----ERFN--SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               +  N  +L+         +HG +    +E  +  F+NG+ K+L+AT V   G+D+ 
Sbjct: 387 CETKKEANELALNASIKQDCQSLHGDIPQKQREITLKGFRNGSFKVLVATNVAARGLDIP 446

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +  +++  +      + +H+  GR GR      CI  Y 
Sbjct: 447 EVDLVVQSSPPKDVESYIHR-SGRTGRAGRTGICICFYQ 484


>gi|294658482|ref|XP_460822.2| DEHA2F10538p [Debaryomyces hansenii CBS767]
 gi|218511820|sp|Q6BLU9|PRP28_DEBHA RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|202953164|emb|CAG89165.2| DEHA2F10538p [Debaryomyces hansenii]
          Length = 580

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 498 SNFRSVVERFN-SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           +NF+   E     L     S   +IHG  S   +E  +DSF+ G  K+LIAT V   GID
Sbjct: 443 ANFKKACEELAYELSRKGFSDNTVIHGSKSQEARERAIDSFREGKDKILIATDVAARGID 502

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILL 595
           + + S+++           +H++ GR GR G + +SC  +
Sbjct: 503 IPNVSLVVNYQMTKKFDEYIHRI-GRTGRAGNKGTSCTFI 541


>gi|73953311|ref|XP_851746.1| PREDICTED: similar to Nucleolar RNA helicase II (Nucleolar RNA
           helicase Gu) (RH II/Gu) (DEAD-box protein 21) [Canis
           familiaris]
          Length = 784

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 137/350 (39%), Gaps = 83/350 (23%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++            Q +++AP   LA Q        T+ 
Sbjct: 228 IAQARTGTGKTFSFAIPLIVKLQGELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITR- 286

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +   +ER+ +G   I++GT    +D +Q  KL L     V++DE
Sbjct: 287 -KLAVACFYGGTPYGGQ---IERMRNG-IDILVGTPGRIKDHLQNGKLDLTKLKHVVLDE 341

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTAT------PIPRTLVLTSLGDIDIS 446
             +         V++ L +  K  +   P  LL +AT       + +  + ++   +D+ 
Sbjct: 342 VDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDL- 400

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
                  G+K  KT I         +E L +      K +W       ++ +    V+  
Sbjct: 401 ------IGKKTQKTAI--------TVEHLAI------KCHWT------QRAAVIGDVIRV 434

Query: 507 FNSLH-------------EHFTSSIAI------IHGRMSDIDKESVMDSFKNGTCKLLIA 547
           ++  H             +  + +++I      +HG +    +E  +  F+NG   +L+A
Sbjct: 435 YSGFHGRTIIFCETKKEAQELSQNVSIRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVA 494

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           T V   G+D+ +  ++I  +      + +H+  GR GR      CI  Y 
Sbjct: 495 TNVAARGLDIPEVDLVIQSSPPKDVESYIHR-SGRTGRAGRTGICICFYQ 543


>gi|328471831|gb|EGF42708.1| primosome assembly protein PriA [Vibrio parahaemolyticus 10329]
          Length = 734

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 19/159 (11%)

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQN 347
           SQ      +L+G  GSGKT V L  +   +E G QA+++ P IG+  Q     I ++ + 
Sbjct: 214 SQTGFACYLLEGVTGSGKTEVYLNLIKPVLEKGKQALVLVPEIGLTPQT----INRFKRR 269

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + V++I   + +  R  A        A IIIGT +       +  L ++IVDE+H   
Sbjct: 270 FNVPVDVIHSGLNETERLNAWLSARDKAAGIIIGTRSALLAP--FADLGIIIVDEEHDTS 327

Query: 408 VQQRLKL-----------TQKATAPHVLLMTATPIPRTL 435
            +Q+  L             K   P ++L +ATP   TL
Sbjct: 328 YKQQDSLRYHARDVAVMRAHKEQVP-IVLGSATPALETL 365


>gi|301166278|emb|CBW25853.1| putative ATP-dependent RNA helicase [Bacteriovorax marinus SJ]
          Length = 654

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 133/325 (40%), Gaps = 54/325 (16%)

Query: 300 GDVGSGKT-------LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            + GSGKT       +  L+   A      Q VI++P   LAQQ  +F ++      I  
Sbjct: 49  AETGSGKTGSFAIPIMEILLEEKALDNPSQQIVILSPTRELAQQTNKFFEQVGAELGIKS 108

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF- 406
             I G        K +E +  G  H+++ T     D      I     + V+ DE  R  
Sbjct: 109 SCIIGG---EKIEKQIEELKEG-VHVLVATPGRLNDLTKQKEIDLANCLAVVFDEADRLF 164

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS-LGDIDISKITEKPAGRKPIKTVI- 462
             G ++ ++           ++   P  R L++ S   ++D+     K  G +P++  + 
Sbjct: 165 DMGFKKDIEF----------ILNGIPKTRQLIMVSATTNMDVLNTAFK-FGSQPLEIKLN 213

Query: 463 ---IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517
              I ++ ID  I     ++ + +K   +  Q++  +++   +++        H  +   
Sbjct: 214 EESILVDNIDHKI----AMIDKNEKMPLLVKQLQTHEDA--YAIIFCNTQFQTHLVAEWL 267

Query: 518 ------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                    I GRM    +  +M+ F++    +L+ T V   G+D+ D +++I  +  + 
Sbjct: 268 KKMNFKAKPISGRMPQNKRTRLMEEFRSKETTILVCTDVAARGLDIKDVNLVINFDLPNE 327

Query: 572 GLAQLHQLRGRVGR----GEEISSC 592
             + +H++ GR GR    G+ IS C
Sbjct: 328 AASYVHRI-GRTGRAGKDGQAISFC 351


>gi|302817541|ref|XP_002990446.1| hypothetical protein SELMODRAFT_160867 [Selaginella moellendorffii]
 gi|300141831|gb|EFJ08539.1| hypothetical protein SELMODRAFT_160867 [Selaginella moellendorffii]
          Length = 483

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 147/355 (41%), Gaps = 84/355 (23%)

Query: 258 EGKIAQKILRNIPFS------PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           E KI++ +LR I +S      P+K Q   +  I   M+  +R L + Q   GSGKT   +
Sbjct: 85  ELKISEPLLRGI-YSEMKFERPSKIQAETLPLI---MNPPHRNL-VAQAHNGSGKTTCFV 139

Query: 312 IAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           + M + V       QA+ + P   LA Q+   +++  + TQI    I   +P     K+ 
Sbjct: 140 LGMLSRVNTSLHEPQALCVCPTRELALQNQAVLERMARFTQITSTCI---IPPTENIKSS 196

Query: 369 ERIAHGQAHIIIGT-----HALFQD-SIQYYKLILVIVDEQHR---------FGVQQRLK 413
            R  H    +I GT      A+  D ++    L +++ DE            F ++   +
Sbjct: 197 LR-GHIHDQVIFGTPGSLERAILNDRNLDVQHLNVLVFDEADHMLDQNGFRDFSMKLLRR 255

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-NRIDEVI 472
           + ++A +  +LL +AT                   +EK    K   +  IPI NR+   +
Sbjct: 256 INKQAPSCQLLLFSAT------------------FSEKV---KNFVSKSIPIANRV--FV 292

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKE--------------------SNFRSVVERFNSLHE 512
           E+L++ L   K+    CP    K E                     + RSV E    LHE
Sbjct: 293 EKLELSLDVIKQYRVNCPTERAKFEVLKDRIYPIAEKLGQSIIFAESRRSVTE----LHE 348

Query: 513 HFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +     + IHG      ++ ++D F+ G  ++LI+T V+  G DV   ++++
Sbjct: 349 KLEADGHKCSSIHGGYKPDVRDKIIDEFRQGITRILISTDVLSRGFDVAQVTLVV 403


>gi|297380243|gb|ADI35130.1| primosomal protein N' [Helicobacter pylori v225d]
          Length = 619

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + ++A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHSA-SLLFGDTGSGKTEIYMHSIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      K + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKKVFKEN----LGLWHSKLSQTQKKQFLEKLYLQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 219 LKELGLIIVDEEHDFS 234


>gi|302660003|ref|XP_003021686.1| hypothetical protein TRV_04197 [Trichophyton verrucosum HKI 0517]
 gi|291185595|gb|EFE41068.1| hypothetical protein TRV_04197 [Trichophyton verrucosum HKI 0517]
          Length = 813

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 130/332 (39%), Gaps = 57/332 (17%)

Query: 302 VGSGKTLVALIAMAAAVEA-------------GGQAVIMAPIGILAQQ-HYEFIKKYTQN 347
            GSGKT   L+ +   + +             G  A+I+AP   LAQQ   E +K     
Sbjct: 416 TGSGKTAAFLLPLLVYISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPL 475

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHG---QAHIIIGTHALFQDSIQYYKLIL-----VI 399
              +V I+ G+        +LE  A+     A III T     D I+   L+L     VI
Sbjct: 476 NFNVVSIVGGH--------SLEEQAYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVI 527

Query: 400 VDEQHR----------------FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSL 440
           +DE  R                  V      T++A     +        R   T++ T+ 
Sbjct: 528 MDEADRMIDLGFEEPVNKILDALPVSNEKPDTEEAENAQAMSQHIGGKDRYRQTMMYTAT 587

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
               + +I  K   R  I T+      +D V +R++ V  E K+   +   +  ++    
Sbjct: 588 MPSAVERIARKYLRRPAIVTIGNIGEAVDTVEQRVEFVAGEDKRKKRLAEILTSREYRPP 647

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N +   +      +H   S   +HG  +   +E+ + S +NG+  +L+AT +   
Sbjct: 648 IIVFVNIKRNCDAVARDIKHMGFSAVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGR 707

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           GIDV D S+++  N      +  H++ GR GR
Sbjct: 708 GIDVPDVSLVVNFNMATNIESYTHRI-GRTGR 738


>gi|260877946|ref|ZP_05890301.1| primosomal protein N` [Vibrio parahaemolyticus AN-5034]
 gi|308089839|gb|EFO39534.1| primosomal protein N` [Vibrio parahaemolyticus AN-5034]
          Length = 734

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 19/159 (11%)

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQN 347
           SQ      +L+G  GSGKT V L  +   +E G QA+++ P IG+  Q     I ++ + 
Sbjct: 214 SQTGFACYLLEGVTGSGKTEVYLNLIKPVLEKGKQALVLVPEIGLTPQT----INRFKRR 269

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + V++I   + +  R  A        A IIIGT +       +  L ++IVDE+H   
Sbjct: 270 FNVPVDVIHSGLNETERLNAWLSARDKAAGIIIGTRSALLAP--FADLGIIIVDEEHDTS 327

Query: 408 VQQRLKL-----------TQKATAPHVLLMTATPIPRTL 435
            +Q+  L             K   P ++L +ATP   TL
Sbjct: 328 YKQQDSLRYHARDVAVMRAHKEQVP-IVLGSATPALETL 365


>gi|225872284|ref|YP_002753739.1| primosomal protein N' [Acidobacterium capsulatum ATCC 51196]
 gi|225794313|gb|ACO34403.1| primosomal protein N' [Acidobacterium capsulatum ATCC 51196]
          Length = 825

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 17/167 (10%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGIL 333
           ++Q+ A+  I   + +      +L G  GSGKT V L AM  A+E G  ++++ P IG+ 
Sbjct: 280 EAQQQALAQITGSVEEGGFRPYLLHGVTGSGKTAVYLAAMRHALERGKSSILLVPEIGLT 339

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            Q   +  + +     ++   +   +P+  R +   RI   +A +++GT +     ++  
Sbjct: 340 PQMAAQLHRAFGSEVALLHSAL---LPE-ERAEQWHRIRRREARVVVGTRSAIFAPVE-- 393

Query: 394 KLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP 430
            L L++VDE+H          R+  +    +  K     V+L +ATP
Sbjct: 394 DLGLILVDEEHDGSYKQESVPRYHARDVAVMRAKLAGATVVLGSATP 440


>gi|149911775|ref|ZP_01900380.1| primosome assembly protein PriA [Moritella sp. PE36]
 gi|149805163|gb|EDM65184.1| primosome assembly protein PriA [Moritella sp. PE36]
          Length = 714

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 14/162 (8%)

Query: 255 INVEGKIAQKILRNIPFS---PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           I ++   AQ   +N+  S   PT + E AI     D++     L  L G  GSGKT V L
Sbjct: 179 IKIQDNDAQHWRQNLVISDNRPTLNTEQAITIAAIDINHFATYL--LDGVTGSGKTEVYL 236

Query: 312 IAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
             +   ++ G QA+++ P IG+  Q    F +++  N  I+   +   +  A RR+A   
Sbjct: 237 NVIEKVLKTGRQALVLVPEIGLTPQTISRFKRRF--NVPIVA--LHSGLNDAERREAWLE 292

Query: 371 IAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              G A I+IGT  A+F      + L ++I+DE+H   ++Q+
Sbjct: 293 AQAGVAGIVIGTRSAIF---TPMHDLGVIIIDEEHDGSLKQQ 331


>gi|74139596|dbj|BAE40935.1| unnamed protein product [Mus musculus]
          Length = 406

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWRLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|77408110|ref|ZP_00784857.1| competence protein F [Streptococcus agalactiae COH1]
 gi|77173294|gb|EAO76416.1| competence protein F [Streptococcus agalactiae COH1]
          Length = 429

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 160/368 (43%), Gaps = 66/368 (17%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q    +++L+ +S K  +L  +    G+GKT +   ++A  ++ GG   I +P I +
Sbjct: 93  TPYQNEVSEELLKGISSKENLL--VHAVTGAGKTEMIYHSIAKVIDTGGSVCIASPRIDV 150

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
             + H    K+ + + +  + ++ G  P +++R  L          I  TH L +    Y
Sbjct: 151 CLELH----KRLSNDFRCAITLMHGESP-SYQRSPL---------TIATTHQLLKF---Y 193

Query: 393 YKLILVIVDEQHRF----------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           +   L+IVDE   F          GV+Q LK  +  T+  +   + T + R +    L  
Sbjct: 194 HAFDLLIVDEVDAFPYVDNPILYHGVKQALK--KNGTSIFLTATSTTELERKVARKELKK 251

Query: 443 IDISKITEKPAGRKPIKTVIIP----INRIDEVIE------RLKVVLSEGKKAYW----I 488
           + +++       R     ++IP    ++ I + ++      +L  ++++ ++  +     
Sbjct: 252 LHLAR-------RFHANPLVIPEMVWVSGIQKSLQTQKLPPKLYQLINKQRQTRYPLLLF 304

Query: 489 CPQIEEKKESNFRSVVERFNSLHE-HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            P I E +   F  ++ +   + +  F SS            +  ++  F++    +L++
Sbjct: 305 FPHIAEGQV--FTEMLRQAFPMEKIGFVSS--------KSTSRLKLVQDFRDNKLSILVS 354

Query: 548 TTVIEVGIDVVDASIIIIENAEH-FGLAQLHQLRGRVGRGEEISSCILLY-HPPLSKNSY 605
           TT++E G+      + +I+   H F  + L Q+ GRVGR  E    +L + H   SK+ +
Sbjct: 355 TTILERGVTFPSVDVFVIQANHHLFTKSSLVQISGRVGRALERPEGLLYFLHDGKSKSMH 414

Query: 606 TRLSVLKN 613
             +  +KN
Sbjct: 415 QAIKEIKN 422


>gi|302341870|ref|YP_003806399.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
 gi|301638483|gb|ADK83805.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
          Length = 573

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 139/350 (39%), Gaps = 50/350 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SPT  Q + I  +L+          I Q   G+GKT    + +   +  G    QA+++A
Sbjct: 38  SPTPIQTAMIPLMLEGRDV------IGQAQTGTGKTAAFGLPLLHNISPGVGQAQALVLA 91

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMP---QAHR-RKALERIAH--GQAHIIIGT 382
           P   LA Q  E ++ Y +     V  + G  P   Q  R RK ++ +    G+   +IG 
Sbjct: 92  PTRELAIQVAEALQGYGRKMGARVMAVYGGAPYGLQISRLRKGVDVVVGTPGRVLDLIGQ 151

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            AL  D ++      V++DE           L+    A    ++ ATP  R   L S   
Sbjct: 152 KALRLDMVET-----VVIDEADEM-------LSMGFIADIQAILEATPSQRQTALFS--- 196

Query: 443 IDISKITEKPAGRK--------PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
                 T  PA R+        P    + P     E +E+   +L E  K   +C  +E 
Sbjct: 197 -----ATLPPAIRQMSQSYMVEPQSVSVSPRQLTVEAVEQRYYLLDERDKLAALCRLLEV 251

Query: 495 KKESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +  ++   F         L +  ++   +   I+G +S   +  V+  F+N   KLL+AT
Sbjct: 252 EPVASALIFCRTKAGTGQLADELSARGFAAEAINGDLSQEARIRVLGRFRNNQLKLLVAT 311

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+ D S +I  +        +H++ GR GR       I L  P
Sbjct: 312 DVAARGLDIDDISHVINFDPPQDPEVYVHRI-GRTGRAGRDGVAISLLSP 360


>gi|291165177|gb|ADD81193.1| vasa [Auxis rochei]
          Length = 627

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/334 (19%), Positives = 136/334 (40%), Gaps = 58/334 (17%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+ +   + A G            +A+I+AP   L  Q Y   +K+   T 
Sbjct: 239 TGSGKTAAFLLPILQQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTC 298

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   ++ G +   H+ + + R      +++ GT     D I   K+ L     +++DE  
Sbjct: 299 VRPVVVYGGVSTGHQIREISR----GCNVVCGTPGRLLDMIGRGKVGLTKLRYLVLDEAD 354

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK------- 451
           R        +      P +  +  +P +P     +TL+ ++    DI ++          
Sbjct: 355 R--------MLDMGFEPDMRRLVGSPGMPSKENRQTLMFSATYPEDIQRMAADFLKTDYL 406

Query: 452 -------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
                        ++   I + +  +  + L ++ + G +   +   +E K++++F   +
Sbjct: 407 FLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTTGTERTMVF--VETKRQADF---I 461

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             F    +  T+SI   HG     ++E  +  F++G C +L+AT+V   G+D+ D   ++
Sbjct: 462 ATFLCQEKVPTTSI---HGDREQREREQALADFRSGKCPVLVATSVAARGLDIPDVQHVV 518

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             +  +     +H++ GR GR       +  Y P
Sbjct: 519 NFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFYDP 551


>gi|170092587|ref|XP_001877515.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647374|gb|EDR11618.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 397

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 152/365 (41%), Gaps = 93/365 (25%)

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR------------------------- 296
           A++ L+++P +  +S    + D   +M  K  +LR                         
Sbjct: 3   AEEQLQDVPENEIESNWDQVVDNFDNMDLKPELLRGIYAYGFERPSAIQQRAIVPVVKGH 62

Query: 297 --ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             I Q   G+GKT    I++   ++    G QA+I+AP   LAQQ  + +        I 
Sbjct: 63  DVIAQAQSGTGKTATFSISILQQLDMSIKGTQALILAPTRELAQQIQKVVIALGDYMNIE 122

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVD 401
                G     + R+ + ++  G   +++GT           AL  D+I+ +   L   D
Sbjct: 123 CHACVGG---TNVREDMAKLQEG-VQVVVGTPGRVFDMINRRALRTDNIKIF--CLDEAD 176

Query: 402 EQHRFGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           E    G + ++    +L  + T   V+L++AT +P           D+ ++T+K   R P
Sbjct: 177 EMLSRGFKDQIYEVFQLLPQDT--QVVLLSAT-MP----------ADVLEVTKKFM-RDP 222

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE------------ 505
           ++ ++          +R ++ L EG K ++I  + EE K      + E            
Sbjct: 223 VRILV----------KRDELTL-EGIKQFYIAVEKEEWKLDTLCDLYETVTITQAVIFCN 271

Query: 506 ---RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              + + L E   S   +++ +HG M    +E +M  F++G+ ++LI T ++  GIDV  
Sbjct: 272 TRRKVDWLTEKMHSREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLITTDLLARGIDVQQ 331

Query: 560 ASIII 564
            S++I
Sbjct: 332 VSLVI 336


>gi|17546930|ref|NP_520332.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
 gi|17429230|emb|CAD15918.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 495

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 125/295 (42%), Gaps = 35/295 (11%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHI 378
           +A+I+ P   LA Q Y+ + KY ++T +   ++ G +   PQ  + R+ +E +      +
Sbjct: 93  RALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQTEQLRRGVEVLVATPGRL 152

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVL 437
           +     + Q S+   ++ ++++DE  R      L   Q+       ++   P  R TL+ 
Sbjct: 153 L---DHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQR-------IINLLPAHRQTLLF 202

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I K+      R P    +   N   + + ++   + +G K   +   + ++ E
Sbjct: 203 SATFSPEIKKLAASYL-RHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQRAE 261

Query: 498 ----------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                     SN +    R     E    +   IHG  +  ++   +++FK GT  +L+A
Sbjct: 262 QGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQGTVDVLVA 321

Query: 548 TTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           T V   G+D+     +I      NAE +    +H++ GR GR       + L+ P
Sbjct: 322 TDVAARGLDISQMPCVINFDLPFNAEDY----VHRI-GRTGRAGASGDALSLFAP 371


>gi|2500516|sp|Q40470|IF4A7_TOBAC RecName: Full=Eukaryotic initiation factor 4A-7; Short=eIF-4A-7;
           AltName: Full=ATP-dependent RNA helicase eIF4A-7
 gi|485949|emb|CAA55738.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 121/312 (38%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++   L        +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLS 196

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V + +AT  P  L +T        K   KP        V I
Sbjct: 197 RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMNKP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R D  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRT 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 361

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 362 NYLHRI-GRSGR 372


>gi|99080431|ref|YP_612585.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
 gi|99036711|gb|ABF63323.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
          Length = 710

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 132/331 (39%), Gaps = 50/331 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +A+A  +          A   A+++AP   LA Q    +     +
Sbjct: 43  LVSAQTGSGKTVGFGLAIAPTILGEDGTFERAASPLALVIAPTRELALQVKRELSWLYGD 102

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDE 402
              ++    G M     R+ALER     AHI++ T    +D     SI    +  V++DE
Sbjct: 103 AGAVLASCVGGMDMRDERRALER----GAHIVVATPGRLRDHITRGSIDLSGVAAVVLDE 158

Query: 403 QHR---FGVQQRLK--LTQKATAPHVLLMTAT---PIPRTLVLTSLGDID-ISKI--TEK 451
                  G ++ L+  L +       LL +AT   PI   L  T   D   IS I  +E+
Sbjct: 159 ADEMLDLGFREDLEFILEETPEDRQTLLFSATVSKPIA-ALAQTYQNDAQRISTINKSEQ 217

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            +    +  V+ P +  + +I  L+    E   A             N R+ V R  +  
Sbjct: 218 HSDISYLAHVVAPHDIENAIINVLR--FHEAPNAIVFA---------NTRAAVNRLLTRL 266

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            +    +  + G +S  ++   + + ++G  ++ +AT V   GID+ +  +++     H 
Sbjct: 267 SNRGFQVVALSGELSQSERAGALQAMRDGRARICVATDVAARGIDLPNLDLVV-----HA 321

Query: 572 GLAQLHQL----RGRVGRGEEISSCILLYHP 598
            L   H+      GR GR     +  L+  P
Sbjct: 322 DLPSSHETLLHRSGRTGRAGRKGASALMVTP 352


>gi|238919400|ref|YP_002932915.1| ATP-dependent RNA helicase DbpA [Edwardsiella ictaluri 93-146]
 gi|238868969|gb|ACR68680.1| ATP-independent RNA helicase DbpA [Edwardsiella ictaluri 93-146]
          Length = 457

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 132/317 (41%), Gaps = 32/317 (10%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKK---YTQNTQIIV 352
           Q   GSGKT    + +   ++A     Q++++ P   LA Q    +++   Y  N +++ 
Sbjct: 46  QAKTGSGKTAAFGLGLLQHIDASRFITQSLVLCPTRELADQVAAALRRLARYMPNIKVLT 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +P   +R +L    H   HII+ T     D ++   L L     +I+DE  R  
Sbjct: 106 --LCGGVPFGAQRDSL---IHA-PHIIVATPGRLLDHLKKETLSLEALQTLILDEADRM- 158

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               L +   A A   ++  A    +TL+ ++    +I+ I+ +   R P+   I     
Sbjct: 159 ----LDMG-FADALDEVISWAPEKRQTLLFSATWPAEIAAISRR-IQRDPLTIEIDTDGE 212

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIH 522
           +  V +R   V   GK         + +  S     N +   +      E    S+ ++H
Sbjct: 213 LPAVEQRFYEVSRSGKTGLLQALLSQHQPASCVVFCNTKKDCQAVYDALEESGQSVLVLH 272

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-G 581
           G M   D++  +  F NG+ ++L+AT V   G+D+   +++I  N E     ++H  R G
Sbjct: 273 GDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKALAMVI--NYELSWDPEVHVHRIG 330

Query: 582 RVGRGEEISSCILLYHP 598
           R  R       I L  P
Sbjct: 331 RTARAGASGLAISLCAP 347


>gi|221487611|gb|EEE25843.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
          Length = 685

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 157/389 (40%), Gaps = 67/389 (17%)

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKT 307
           +E G P  +     Q  LR + F+    + +AI+ I    +   R M+ I Q   GSGKT
Sbjct: 280 EETGFPTAI-----QNQLRKMNFA----EPTAIQKIGWPTALSGRDMIGIAQ--TGSGKT 328

Query: 308 LVALI-----AMAAAVEAGGQA---VIMAPIGILAQQHYEFIKKYTQ------------- 346
           L  L+     A A    A GQ    +++AP   LA Q      ++T+             
Sbjct: 329 LGFLLPGLVHAAAQPPLAQGQGPIVLVLAPTRELAMQIRHECMRFTEGLSLTSSEDPQRA 388

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVD 401
           +T+     + G +P   R+     + +G A I+I T     D +        ++  +++D
Sbjct: 389 DTKFRTACVYGGVP---RQGQATELRNG-AEILIATPGRLIDFLDLGVTNLKRVSYIVLD 444

Query: 402 EQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           E  R     F  Q R   +Q       LL +AT       L S  +   +++ +   G+ 
Sbjct: 445 EADRMMDMGFEPQVRKIFSQVRPDRQTLLWSATWPKEVRGLAS--EFCRTRVVKLQVGKA 502

Query: 457 PIKTVIIPINRI-----DEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFN 508
            ++       RI     +++  RL  VL E   G+K    C   E K++ +      R+ 
Sbjct: 503 DLQANANVTQRIEVVSSNQLQHRLLSVLQEEVTGQKTLIFC---ETKRQCDQLCRELRYR 559

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L          IHG     +++ ++  F+ G C++L+AT V   G+D+ D   +I  + 
Sbjct: 560 QLR------ALAIHGDKEQRERDRILHDFRKGDCEILLATDVASRGLDIQDVKFVINYDV 613

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                + +H++ GR GR     + I  + 
Sbjct: 614 PKNIESYIHRI-GRTGRAGNKGTAISFFQ 641


>gi|237830475|ref|XP_002364535.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211962199|gb|EEA97394.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|221507408|gb|EEE33012.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 685

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 157/389 (40%), Gaps = 67/389 (17%)

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKT 307
           +E G P  +     Q  LR + F+    + +AI+ I    +   R M+ I Q   GSGKT
Sbjct: 280 EETGFPTAI-----QNQLRKMNFA----EPTAIQKIGWPTALSGRDMIGIAQ--TGSGKT 328

Query: 308 LVALI-----AMAAAVEAGGQA---VIMAPIGILAQQHYEFIKKYTQ------------- 346
           L  L+     A A    A GQ    +++AP   LA Q      ++T+             
Sbjct: 329 LGFLLPGLVHAAAQPPLAQGQGPIVLVLAPTRELAMQIRHECMRFTEGLSLASSEDPQRA 388

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVD 401
           +T+     + G +P   R+     + +G A I+I T     D +        ++  +++D
Sbjct: 389 DTKFRTACVYGGVP---RQGQATELRNG-AEILIATPGRLIDFLDLGVTNLKRVSYIVLD 444

Query: 402 EQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           E  R     F  Q R   +Q       LL +AT       L S  +   +++ +   G+ 
Sbjct: 445 EADRMMDMGFEPQVRKIFSQVRPDRQTLLWSATWPKEVRGLAS--EFCRTRVVKLQVGKA 502

Query: 457 PIKTVIIPINRI-----DEVIERLKVVLSE---GKKAYWICPQIEEKKESNFRSVVERFN 508
            ++       RI     +++  RL  VL E   G+K    C   E K++ +      R+ 
Sbjct: 503 DLQANANVTQRIEVVSSNQLQHRLLSVLQEEVTGQKTLIFC---ETKRQCDQLCRELRYR 559

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L          IHG     +++ ++  F+ G C++L+AT V   G+D+ D   +I  + 
Sbjct: 560 QLR------ALAIHGDKEQRERDRILHDFRKGDCEILLATDVASRGLDIQDVKFVINYDV 613

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                + +H++ GR GR     + I  + 
Sbjct: 614 PKNIESYIHRI-GRTGRAGNKGTAISFFQ 641


>gi|113477200|ref|YP_723261.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101]
 gi|110168248|gb|ABG52788.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101]
          Length = 495

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 152/358 (42%), Gaps = 45/358 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  I F+ PT  Q  AI  +L+          + Q   G+GKT    + +   ++     
Sbjct: 18  LETIGFTEPTPIQAQAIPPLLEGKDI------VGQAQTGTGKTAAFSLPILEQIDIDTNA 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYT-------QNTQIIVEIITGNMPQAHRRKALERIAHG 374
            QA+I+ P   LA Q  E I+++T          ++ V  + G   Q+  R++ +R+  G
Sbjct: 72  VQALILTPTRELALQVTEAIRQFTGINSKGPTKRRLFVLTVYGG--QSIERQS-QRLQKG 128

Query: 375 QAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             HI++GT       L ++S++   L ++++DE         ++  +K       ++ A 
Sbjct: 129 -VHIVVGTPGRIIDMLNRNSLKLDHLKMMVLDEADEMLSMGFIQDVEK-------ILEAA 180

Query: 430 PIPR-TLVLTSLGDIDISKITEK----PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           P  R T   ++  D  I K+  K    P   K  +    P  RI + +  L    S+GK 
Sbjct: 181 PAERQTAFFSATMDYSIRKLVNKYLQSPVTVKVAQQKTTP-KRITQTVYILPRGWSKGKA 239

Query: 485 AYWICPQIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
              I  ++E+ + +      R       +  +    S+   HG ++   +E ++  F+N 
Sbjct: 240 LQPIL-ELEDPEAALIFVRTRQAAAELTNQLQSAGHSVDEYHGNLNQSQRERLLTRFRNQ 298

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + ++AT +   G+DV   + +I  +      + +H++ GR GR     + I L HP
Sbjct: 299 QVRWVVATDIAARGLDVDHLTHVINYDLPDSVDSYVHRI-GRTGRAGREGTAISLIHP 355


>gi|251780900|ref|ZP_04823820.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243085215|gb|EES51105.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 432

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 148/348 (42%), Gaps = 48/348 (13%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  E    Y+++T I   +I G + Q    K   RI      I+I T
Sbjct: 77  KALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQ----KPQTRILGEGVDILIAT 132

Query: 383 HALFQDSI--QYYKLILV---IVDEQHRFGVQQRLKLTQKATA--PHV---LLMTATPIP 432
                D I  +Y  L  V   ++DE  R      ++  +K  A  P V   LL +AT +P
Sbjct: 133 PGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKVRQNLLFSAT-MP 191

Query: 433 ---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWI 488
              ++LV + L D              P+K  + P++  ID + + +  V  + KK+  +
Sbjct: 192 SEVKSLVNSILKD--------------PVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLV 237

Query: 489 CPQIEEKKESNFRSVVERFNS------LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
               +E  +S       ++ +      L +  T S AI HG  S   ++  + +FK G  
Sbjct: 238 HLLKDESIKSLLVFSRTKYGANNIVKDLAKTGTESQAI-HGNKSQNARQLALSNFKEGKI 296

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSCILLYHP 598
           ++L+AT +   GIDV   S +I  +        +H++ GR GR    G  IS C +    
Sbjct: 297 RVLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRI-GRTGRAGNSGVAISFCDVDEKS 355

Query: 599 PLSKNSYT---RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
            L     T    + V+KN E   +    +  QRKE +      +  PK
Sbjct: 356 ALKDIEKTIGKNIPVMKNVEFERIAITREPAQRKEADKKTTDANKKPK 403


>gi|261204203|ref|XP_002629315.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis SLH14081]
 gi|239587100|gb|EEQ69743.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis SLH14081]
 gi|239614347|gb|EEQ91334.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis ER-3]
          Length = 804

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 146/370 (39%), Gaps = 79/370 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------------E 319
           P+  Q +AI   LQ     NR L I     GSGKT   L+ +   +              
Sbjct: 386 PSPIQRAAIPIALQ-----NRDL-IGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEWRRN 439

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAH---GQ 375
            G  A+I+AP   LAQQ     KK++      +V I+ G+        +LE  A+     
Sbjct: 440 DGPYAIILAPTRELAQQIELEAKKFSAPLGFNVVSIVGGH--------SLEEQAYSLRNG 491

Query: 376 AHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR----------------FGVQQRLKL 414
           A III T     D I+     + +   VI+DE  R                  V  +   
Sbjct: 492 AEIIIATPGRLVDCIERRMIVFSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNQKPD 551

Query: 415 TQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           T+ A  P  +        R   T++ T+     + +I  K   R  I T+      +D V
Sbjct: 552 TEDAENPQAMSQHIGGKDRYRQTMMYTATMPPAVERIARKYLRRPAIVTIGNIGEAVDTV 611

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----------SIAII 521
            +R++ +  E K+   +   +  ++   FR  +  F ++  +  +          S   +
Sbjct: 612 EQRVEFISGEDKRKKRLAEILSSRE---FRPPIIVFVNIKRNCDAVARDIKNMGYSSVTL 668

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----L 576
           HG  +   +E+ + S +NG   +L+AT +   GIDV D S+++     +F +A       
Sbjct: 669 HGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVV-----NFNMATNIENYT 723

Query: 577 HQLRGRVGRG 586
           H++ GR GR 
Sbjct: 724 HRI-GRTGRA 732


>gi|227824655|ref|ZP_03989487.1| primosomal protein N [Acidaminococcus sp. D21]
 gi|226905154|gb|EEH91072.1| primosomal protein N [Acidaminococcus sp. D21]
          Length = 798

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 17/168 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q++AI  +     +      +L+G  GSGKT V L     A+  G Q +++ P   L
Sbjct: 265 TDEQQAAINAVEICRKRGTFHTFLLRGVTGSGKTEVYLRLTDKALRDGKQVMVLVPEIAL 324

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
             Q  +  K +  N    V +    +  + R    +R+ +G+A ++IG   A+F     +
Sbjct: 325 TDQIVKRFKSWFGNA---VAVAHSKLSASERADVWDRMRNGKARVLIGVRSAVF---CPF 378

Query: 393 YKLILVIVDEQH--------RFGVQQRLKLTQKATA--PHVLLMTATP 430
             L LV++DE+H        R G   RL    +A A    V+L +ATP
Sbjct: 379 KDLGLVVIDEEHESTYKQEERPGYNARLVAQVRANAHGAPVVLGSATP 426


>gi|170694034|ref|ZP_02885190.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170141106|gb|EDT09278.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 467

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 136/309 (44%), Gaps = 32/309 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++      QA+++ P   LA Q  + I++  +  + I V
Sbjct: 50  IAQAKTGSGKTAAFSLALLARLDTRNFAVQAMVLCPTRELADQVTQEIRRLARAEENIKV 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G  P   +  +LE   HG AHI++GT     D ++   L L     +++DE  R  
Sbjct: 110 LTLCGGTPMRPQTASLE---HG-AHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRML 165

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIK 459
              F       + Q       LL +AT  P  +V  S   L +    K+ E+    K I+
Sbjct: 166 DMGFFDDIATVVRQCPKERQTLLFSAT-YPEGIVKLSQQFLRNPKEVKLAERHDNTK-IR 223

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
                +   DE +  + ++L+  +    +     +++  +   V+ R    H     ++A
Sbjct: 224 QRFYEVTE-DERLHAVGLLLNHYRPVSTLAFCNTKQQCRDLLDVL-RAQGFH-----ALA 276

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++
Sbjct: 277 L-HGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI 335

Query: 580 RGRVGRGEE 588
            GR GR ++
Sbjct: 336 -GRTGRADQ 343


>gi|153835022|ref|ZP_01987689.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
 gi|148868543|gb|EDL67640.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
          Length = 430

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 123/312 (39%), Gaps = 47/312 (15%)

Query: 302 VGSGKTLVALIAM--------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            G+GKT    + M         +A     +A+IMAP   LA+Q  + IK YT+ T + V 
Sbjct: 47  TGTGKTAAFSLPMIQQLLESGRSASRKTARALIMAPTRELAEQIADNIKAYTKYTDLSVA 106

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHR--- 405
            I G    + +  ALE    G   I++ T         Q ++    +  ++ DE  R   
Sbjct: 107 AIFGGRKMSSQVTALE----GGVDILVATPGRLEEHIEQGNVSVANIEFLVFDEADRILD 162

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             F    R  +    T P +++ +AT   +  +L             K   RKP +  + 
Sbjct: 163 MGFIHAVRKIMMDVDTDPQIMMFSATTSSQLNLLA------------KDILRKPKRIEVE 210

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV------ERFNSLHEHFTSS 517
             N   + I  +   + + +K   +   I  K   N++ V+      E  N + +     
Sbjct: 211 RANTTAQTIAHVLYPVDQERKTELLSELIGRK---NWKQVLVFVNYKETANDVVKELKLD 267

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                + HG  +   +   ++ FK G  ++++AT V   G+D+ D   ++  +       
Sbjct: 268 GIKAVVCHGDRAQSARRRALEEFKTGKARVMVATDVAARGLDIEDLPHVVNYDMPFLAED 327

Query: 575 QLHQLRGRVGRG 586
            +H++ GR GR 
Sbjct: 328 YVHRI-GRTGRA 338


>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 504

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 143/357 (40%), Gaps = 61/357 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKT------LVALIAMAAAVEAGG-- 322
           PT  Q +AI  +LQ         R + G    G+GKT      ++ L+   A+  A    
Sbjct: 39  PTPIQAAAIPVVLQG--------RDVMGAAQTGTGKTAGFSLPIIQLLLANASNSASPAR 90

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+ P   LA Q  E +K Y ++T +   ++ G M  A +  AL         I+
Sbjct: 91  HPVRALILTPTRELADQVAENVKAYCRHTPLRSTVVFGGMDMAPQTAAL----RAGVEIV 146

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           I T     D +Q   L L     +++DE  R      L   Q+       ++   P  R 
Sbjct: 147 IATPGRLLDHVQQKTLNLSQTQILVMDEADRMLDMGFLPDLQR-------IINLLPKKRQ 199

Query: 435 LVLTSL---GDID--ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL----SEGKKA 485
            ++ S    G+I    S   + P        V I + R ++  +R+  V+    S+  K 
Sbjct: 200 NLMFSATFSGEIKKLASSFLDNP--------VTIEVARSNQTADRVTQVVYKVDSDDAKR 251

Query: 486 YWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +   I  ++       SN +    R     E      + IHG  +  ++ + +++FK 
Sbjct: 252 DIVAHLIRGRQLKQVLVFSNTKIGASRLARELEKGGVKASAIHGDKTQSERMAALEAFKG 311

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           G   +L+AT V   G+D+ D   +I  +  +     +H++ GR GR       I L+
Sbjct: 312 GEIDVLVATDVAARGLDISDLPCVINYDLPYNAEDYVHRI-GRTGRAGASGDAISLF 367


>gi|298372119|ref|ZP_06982109.1| ATP-dependent DNA helicase RecQ [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275023|gb|EFI16574.1| ATP-dependent DNA helicase RecQ [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 640

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 135/324 (41%), Gaps = 49/324 (15%)

Query: 302 VGSGKTLVALIAMAA---------AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           VG G++ +AL+             A+   G  ++++P+  L +   E ++       I  
Sbjct: 32  VGRGESSLALMPTGGGKSITFQVPAMALDGLCLVVSPLVALMKDQVENLRA----RGIKA 87

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH--- 404
             +   M        LE   +G    +  +       LF + + + ++ ++ VDE H   
Sbjct: 88  AAVYSGMTHEQILTTLEDCEYGNFKFLYVSPERLKTELFLNHVNFLRISMIAVDEAHCIS 147

Query: 405 RFGVQQRLKLTQKA-------TAPHVLLMTATPIPRTLVLTSLGD---IDISKITEKPAG 454
           ++G   R      A       TA  VL +TAT  P  +V+  + D       ++  K   
Sbjct: 148 QWGYDFRPSYLHIADVLDMLDTAVPVLALTATATP--VVVDDIQDKLRFPQHRVFRKSFE 205

Query: 455 RKPIKTVIIPI-NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           RK +  V+    N++++++  L+ V   G    ++  + + K+ S+F +     N +   
Sbjct: 206 RKNLNYVVRHTDNKLEQMLRILRRV--AGTSIVYVRSRQQTKEISDFLNK----NGICAD 259

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII-IENAEHFG 572
           F       H  ++  DK    D++K G+ ++++AT    +GID  D   ++ +E  +   
Sbjct: 260 F------FHAGLASDDKNRKQDAWKRGSTRVIVATNAFGMGIDKPDVRTVVHLELPD--S 311

Query: 573 LAQLHQLRGRVGRGEEISSCILLY 596
           L    Q  GR GR E  +  +LLY
Sbjct: 312 LEAYFQEAGRAGRDERTAYAVLLY 335


>gi|283787384|ref|YP_003367249.1| primosomal protein replication factor [Citrobacter rodentium
           ICC168]
 gi|282950838|emb|CBG90515.1| primosomal protein replication factor [Citrobacter rodentium
           ICC168]
          Length = 778

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 267 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 322

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 323 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 376


>gi|260779597|ref|ZP_05888487.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604406|gb|EEX30710.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 733

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 17/180 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   +E G QA+++ P IG+  Q     I ++     + VE+I
Sbjct: 221 LLEGVTGSGKTEVYLNLIKPVLEKGRQALVLVPEIGLTPQT----INRFRHRFDVPVEVI 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +  + R  A        A I+IGT +       +  L ++IVDE+H    +Q+  L 
Sbjct: 277 HSGLNDSERLNAWLSARDKAAGIVIGTRSALLTP--FADLGIIIVDEEHDASYKQQDSLR 334

Query: 416 QKATAPHVL----------LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
             A    V+          L +ATP   TL     G      +TE+     P    ++ +
Sbjct: 335 YHARDVAVMRANKEQIPIVLGSATPALETLHNALSGKYHHLTLTERAGNAVPTSNKVLDV 394


>gi|242239282|ref|YP_002987463.1| ATP-dependent RNA helicase DbpA [Dickeya dadantii Ech703]
 gi|242131339|gb|ACS85641.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 457

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 140/327 (42%), Gaps = 52/327 (15%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIV 352
           Q   GSGKT    + +   ++AG    Q++++ P   LA Q       + +Y  N +++ 
Sbjct: 46  QAKTGSGKTAAFGLGLLQHLDAGRFNTQSLVLCPTRELADQVANELRRLARYMPNIKVLT 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF- 406
             + G +P + +R +L        HII+ T       L ++++    L  +++DE  R  
Sbjct: 106 --LCGGVPFSIQRDSLTH----APHIIVATPGRLLDHLEKETVNLDALQTLVLDEADRML 159

Query: 407 --GV------------QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             G              QR  L   AT P  +   +  I    ++     I+I  + E P
Sbjct: 160 DMGFADAIDAVIAHVPDQRQTLLFSATWPDAIAAISHRIQHDPLV-----IEIDTVDELP 214

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    ++     ++R  + ++ L+ +LS  + A  +   +    + + ++V +   + H+
Sbjct: 215 A----VEQQFYEVSRSGK-LDLLQKLLSREQPASCV---VFCNTKKDCQAVYDALTASHQ 266

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               S+  +HG M   D++  +  F NG+ ++L+AT V   G+D+    +++  N E   
Sbjct: 267 ----SVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKALEMVV--NFELSW 320

Query: 573 LAQLHQLR-GRVGRGEEISSCILLYHP 598
             ++H  R GR  R  E    I L  P
Sbjct: 321 DPEVHIHRIGRTARAGESGLAISLCAP 347


>gi|261187455|ref|XP_002620151.1| ATP-dependent RNA helicase DBP3 [Ajellomyces dermatitidis SLH14081]
 gi|239594201|gb|EEQ76782.1| ATP-dependent RNA helicase DBP3 [Ajellomyces dermatitidis SLH14081]
 gi|239609244|gb|EEQ86231.1| ATP-dependent RNA helicase [Ajellomyces dermatitidis ER-3]
 gi|327356484|gb|EGE85341.1| ATP-dependent RNA helicase DBP3 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 489

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 145/329 (44%), Gaps = 48/329 (14%)

Query: 300 GDVGSGKTL---VALIAMAAAVEAGGQA-----VIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   V  I    A+ A   +     VI+ P   LA Q Y+ + K+T    + 
Sbjct: 116 AETGSGKTLAFGVPCIRKVLAINASRSSSRISAVIITPTRELAMQIYDQLVKFTPKG-VG 174

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
           +  I G   +  +R+AL++     A +++ T    +D     S+   K+  +++DE  R 
Sbjct: 175 LACIYGGASKDDQRRALKK-----ASVVVATPGRLKDLHSDQSLDLQKVKYLVLDEADRM 229

Query: 407 ---GVQQRLKLTQKATAP----HVLLMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKP 457
              G +Q +K    A         ++ TAT P+  R L  T + D     +T    G   
Sbjct: 230 LDKGFEQDIKDIVGAMPSSRKRQTVMFTATWPMSVRKLAATFMKD----PVTVTIGGD-- 283

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVV----ERFNSLH 511
           + + I    RI +++E   VV  E K  +   +  Q +  K +  + +V    ++  +  
Sbjct: 284 LSSDIRANTRIKQIVE---VVKPEDKEYRLLSLLNQYQRGKNAMDKVLVFCLYKKEATRI 340

Query: 512 EHFTSS----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           E F  S    +A IHG M+  ++   +D+FK+G+  LL+AT V   G+D+    +++   
Sbjct: 341 ERFIRSKGFKVAGIHGDMNQTERFKSLDAFKSGSVPLLVATDVAARGLDIPAVKLVLNVT 400

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY 596
                   +H++ GR GR       I ++
Sbjct: 401 FPLTVEDYVHRI-GRTGRAGSDGLAITMF 428


>gi|156549439|ref|XP_001603249.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 795

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 124/319 (38%), Gaps = 40/319 (12%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   +  M   +          G   +I+AP   L+QQ Y   KK+ +   I V 
Sbjct: 301 TGSGKTAAFVWPMLVHIMDQKELDSGDGPIGLILAPTRELSQQIYHEAKKFGKVYNIRVC 360

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
              G   +  + KALE      A I++ T     D     +    ++  +++DE  R   
Sbjct: 361 CCYGGGSKWEQSKALE----SGAEIVVATPGRIIDLVKMKATNLSRVTFLVLDEADRMFD 416

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT--- 460
            G + +++       P    LL +AT   R   L      D  +I +   G         
Sbjct: 417 MGFEPQVRSICNHVRPDRQTLLFSATFKKRIEKLARDALTDPIRIVQGDVGEANTDVTQH 476

Query: 461 VII----PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           VI+    P  +   + + +   LS G    ++  ++  ++ +N   + E           
Sbjct: 477 VIVFYKNPTGKWTWLNQNIVEYLSSGSLLIFVTKKLNAEELANNLKLKEY---------- 526

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            + ++HG M  +++  V+ SFK  T  +L+AT V   G+D+     +I  +         
Sbjct: 527 EVLLLHGDMDQVERNKVITSFKKKTVSILVATDVAARGLDIPHIRTVINYDVARDIDTHT 586

Query: 577 HQLRGRVGRGEEISSCILL 595
           H++ GR GR  E  +   L
Sbjct: 587 HRI-GRTGRAGEKGTAYTL 604


>gi|39644658|gb|AAH18637.2| DDX50 protein [Homo sapiens]
          Length = 423

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +  ++I  + 
Sbjct: 92  AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSP 151

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                + +H+  GR GR      CI  Y P
Sbjct: 152 PQDVESYIHR-SGRTGRAGRTGICICFYQP 180


>gi|22536519|ref|NP_687370.1| helicase [Streptococcus agalactiae 2603V/R]
 gi|25010398|ref|NP_734793.1| competence protein ComFA [Streptococcus agalactiae NEM316]
 gi|76788009|ref|YP_329058.1| competence protein ComFA [Streptococcus agalactiae A909]
 gi|77406961|ref|ZP_00783980.1| competence protein F [Streptococcus agalactiae H36B]
 gi|77410656|ref|ZP_00787016.1| competence protein F [Streptococcus agalactiae CJB111]
 gi|22533352|gb|AAM99242.1|AE014207_3 helicase, putative [Streptococcus agalactiae 2603V/R]
 gi|23094750|emb|CAD45969.1| competence protein ComFA [Streptococcus agalactiae NEM316]
 gi|76563066|gb|ABA45650.1| competence protein ComFA, putative [Streptococcus agalactiae A909]
 gi|77163371|gb|EAO74322.1| competence protein F [Streptococcus agalactiae CJB111]
 gi|77174439|gb|EAO77289.1| competence protein F [Streptococcus agalactiae H36B]
          Length = 429

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 159/368 (43%), Gaps = 66/368 (17%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q    +++L+ +S K  +L  +    G+GKT +   ++A  ++ GG   I +P I +
Sbjct: 93  TPYQNEVSEELLKGISSKENLL--VHAVTGAGKTEMIYHSVAKVIDTGGSVCIASPRIDV 150

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
                 E  K+ + + +  + ++ G  P +++R  L          I  TH L +    Y
Sbjct: 151 C----LELYKRLSNDFRCAITLMHGESP-SYQRSPL---------TIATTHQLLKF---Y 193

Query: 393 YKLILVIVDEQHRF----------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           +   L+IVDE   F          GV+Q LK  +  T+  +   + T + R +    L  
Sbjct: 194 HAFDLLIVDEVDAFPYVDNPILYQGVKQALK--ENGTSIFLTATSTTELERKVARKELKK 251

Query: 443 IDISKITEKPAGRKPIKTVIIP----INRIDEVIE------RLKVVLSEGKKAYW----I 488
           + +++       R     ++IP    ++ I + ++      +L  ++++ ++  +     
Sbjct: 252 LHLAR-------RFHANPLVIPEMVWVSGIQKSLQTQKLPPKLYQLINKQRQTRYPLLLF 304

Query: 489 CPQIEEKKESNFRSVVERFNSLHE-HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            P I E +   F  ++ +   + +  F SS            +  ++  F++    +L++
Sbjct: 305 FPHISEGQV--FTEILRQAFPMEKIGFVSS--------KSTSRLKLVQDFRDNKLSILVS 354

Query: 548 TTVIEVGIDVVDASIIIIENAEH-FGLAQLHQLRGRVGRGEEISSCILLY-HPPLSKNSY 605
           TT++E G+      + +I+   H F  + L Q+ GRVGR  E    +L + H   SK+ +
Sbjct: 355 TTILERGVTFPSVDVFVIQANHHLFTKSSLVQISGRVGRALERPEGLLYFLHDGKSKSMH 414

Query: 606 TRLSVLKN 613
             +  +KN
Sbjct: 415 QAIKEIKN 422


>gi|284929206|ref|YP_003421728.1| superfamily I DNA/RNA helicaseI [cyanobacterium UCYN-A]
 gi|284809650|gb|ADB95347.1| DNA/RNA helicase, superfamily II [cyanobacterium UCYN-A]
          Length = 477

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 143/351 (40%), Gaps = 48/351 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L+ + F +PT+ QE AI  +L+          + Q   G+GKT    + +   V+     
Sbjct: 18  LKELGFENPTEIQEKAIPLMLEGHDV------LGQSQTGTGKTAAYSLPILEKVDIQDPS 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +I+ P   LAQQ  E +K +T   ++ +  + G      + ++LER       I++G
Sbjct: 72  VQVLILTPTRELAQQVAEALKDFTVRRRLYILTVYGGQSIDRQIRSLER----GVQIVVG 127

Query: 382 THALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTAT 429
           T     D I+  KLIL      ++DE            V+  LK T ++ +      T  
Sbjct: 128 TPGRVIDLIERKKLILDSLRWAVLDEADEMLSMGFIDDVKTILKKTPESRSTACFSATMP 187

Query: 430 PIPRTLV---LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
              R LV   L S   I + +    P              RI++ I  +    S+ +KA 
Sbjct: 188 REIRELVNQFLKSPVTISVERTQAAP-------------TRIEQNIYMVPRGWSK-RKAL 233

Query: 487 WICPQIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
               +IE+ + +      +       +  +     +   HG +S   +E ++  F++G  
Sbjct: 234 QPVLEIEDPESAIIFVRTKQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRI 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           KL++AT +   G+DV   S +I  +        +H++ GR GR  +    I
Sbjct: 294 KLVVATDIAARGLDVEGLSHVINYDLPDNSETYIHRI-GRTGRAGKTGKAI 343


>gi|261839800|gb|ACX99565.1| primosomal protein N' (replication factor Y) [Helicobacter pylori
           52]
          Length = 619

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + ++A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHSA-SLLFGDTGSGKTEIYMHSIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      + + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKRVFKEN----LGLWHSKLSQTQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 219 LKELGLIIVDEEHDFS 234


>gi|556308|gb|AAA50407.1| protein synthesis initiation factor 4A [Mus musculus]
          Length = 406

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 126/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              ++  +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVCAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|294945500|ref|XP_002784711.1| helicase with zinc finger protein motif, putative [Perkinsus
           marinus ATCC 50983]
 gi|239897896|gb|EER16507.1| helicase with zinc finger protein motif, putative [Perkinsus
           marinus ATCC 50983]
          Length = 1086

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 13/81 (16%)

Query: 287 DMSQKNRMLRILQGD-------VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY- 338
           D  QK  +LR+ QGD         +GKT VA  A+A A++ GG+A+  +PI  L+ Q Y 
Sbjct: 115 DDFQKRAVLRVSQGDSVFVAAHTSAGKTAVAEYAIADAIKQGGRAIYTSPIKALSNQKYR 174

Query: 339 EFIKKYTQNTQIIVEIITGNM 359
           EF +K+       V ++TG++
Sbjct: 175 EFTQKFDS-----VGVVTGDV 190


>gi|198243415|ref|YP_002215491.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937931|gb|ACH75264.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326623237|gb|EGE29582.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 457

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 137/326 (42%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVSLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI------ 399
              + G  P   +R +L+       HII+ T     D +Q   +      ILV+      
Sbjct: 105 T--LCGGQPFGAQRDSLQH----APHIIVATPGRLLDHLQKETVSLDALHILVMDEADRM 158

Query: 400 --------VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                   +DE  RF    R  L   AT P  +   +  + +  +      I+I  +   
Sbjct: 159 LDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPI-----RIEIDTVDAL 213

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           PA  +             E I  L+ +LS+ + A  +   +    + + ++V +  N++ 
Sbjct: 214 PAIEQQFFE-----TSAHEKISLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALNAVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 Q---SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELVVNYELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFC 345


>gi|160881936|ref|YP_001560904.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160430602|gb|ABX44165.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 527

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 137/313 (43%), Gaps = 47/313 (15%)

Query: 299 QGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI- 354
           Q   G+GKT    I +   ++    G QAVI+ P   LA Q  + + K+++    I  I 
Sbjct: 46  QAQTGTGKTAAFSIPILQKIDPKVKGLQAVILCPTRELAIQVSDEMHKFSKFMHGIKAIP 105

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF--- 406
           I G      + ++L+        I+IGT     D     ++++ K+ ++ +DE       
Sbjct: 106 IYGGQDITRQIRSLK----AGVQIVIGTPGRVMDHMRRKTVKFDKVSMIALDEADEMLNM 161

Query: 407 GVQQRLK--LTQKATAPHVLLMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKTV- 461
           G ++ ++  L +       LL +AT P P   +  T   D  I K+ +K      I+   
Sbjct: 162 GFREDIETILKEMPEDRQTLLFSATMPQPIMDIARTYQKDATIVKVVKKELTVPKIEQYY 221

Query: 462 --IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH--FTSS 517
             + P N++D V+ RL  + S  K+    C        +  R V E   +L     F   
Sbjct: 222 YEVRPKNKVD-VLSRLLDMYSP-KRCLVFC--------NTKRQVDELVTALSGRGFFAEG 271

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGL 573
           +   HG +    ++ VM SF+ G  ++L+AT V   GIDV D   +    + ++ E++  
Sbjct: 272 L---HGDLKQQQRDRVMSSFRTGKAEILVATDVAARGIDVDDVEAVFNYDVPQDEEYY-- 326

Query: 574 AQLHQLRGRVGRG 586
             +H++ GR GR 
Sbjct: 327 --VHRI-GRTGRA 336


>gi|332704265|ref|ZP_08424353.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554414|gb|EGJ51458.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 529

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 133/327 (40%), Gaps = 54/327 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           ++Q   GSGKT   ++ +   ++   A  QA+++ P   LA+Q     +    +   +V 
Sbjct: 83  MVQSRTGSGKTGAFVLPILERIDPNLAATQALVLVPTRELARQVAHEAEVLVGDRARVVA 142

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF-- 406
           +  G        K +E    G AHI++GT       L + +    +L  +I DE  R   
Sbjct: 143 VYGG----VSFGKQVEGFKAG-AHIVVGTPGRILDHLLRHNFNLQELRALIFDEADRMLS 197

Query: 407 -GVQQRLKLTQK-------------ATAPHVLLMTATPI---PRTLVLTSLGDIDISKIT 449
            G    +K  Q+             AT P  ++  A      P+ L L+S          
Sbjct: 198 IGFYPDMKQVQRYMPKRRVNTFMFSATYPAFVMRLAGEFMHKPQMLSLSS---------- 247

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKKESNFRSVVERFN 508
            K      ++ VI  + R+      ++++  E    A+  C         N ++ VE  +
Sbjct: 248 -KQVHVAEVQHVIYEVPRMGRERCLMRIIEVENPTSAFIFC---------NTKAQVEYVS 297

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           ++  +F      + G +S   +ES++D  + G+ +LL++T V   GID+ D S +I+   
Sbjct: 298 TVLANFGYDADGLTGDLSQSKRESILDRVRAGSLRLLVSTDVAARGIDIPDLSHVIMYEP 357

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILL 595
                + +H+  GR GR       I L
Sbjct: 358 PEDPESYIHRA-GRTGRAGASGEVITL 383


>gi|330443927|ref|YP_004376913.1| helicase, swi/snf2 family [Chlamydophila pecorum E58]
 gi|328807037|gb|AEB41210.1| helicase, swi/snf2 family [Chlamydophila pecorum E58]
          Length = 1167

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 19/157 (12%)

Query: 297 ILQGDVGSGKTLVALIAMA-AAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL A+IA+  + +E G G ++I+ P  ++     EF +K+  N +    +
Sbjct: 725 ILADDMGLGKTLQAIIAVTQSKLEKGQGCSLIVCPTSLVYNWKEEF-RKF--NPEFKTLV 781

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK---LILVIVDEQHRFGVQQR 411
           I G +P + RRK ++ +A     + I ++ L Q  I+ +K      V++DE H   ++ R
Sbjct: 782 IDG-IP-SQRRKQIQSLA--DYDVAITSYNLLQKDIELHKDFHFDYVVLDEAHH--IKNR 835

Query: 412 LKLTQKAT----APHVLLMTATPIPRTL-VLTSLGDI 443
                K+     + H L++T TPI  +L  L SL D 
Sbjct: 836 TTRNAKSVKMIQSDHRLILTGTPIENSLEELWSLFDF 872


>gi|255973920|ref|ZP_05424506.1| helicase [Enterococcus faecalis T2]
 gi|255966792|gb|EET97414.1| helicase [Enterococcus faecalis T2]
          Length = 515

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 139/337 (41%), Gaps = 42/337 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + M   ++A     Q +++AP   LA Q  E + +  ++ +I V+
Sbjct: 42  IGQAQTGTGKTAAFGLPMLNKIDADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQ 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHR 405
            + G      + + L+     + HI++GT     D I    L L  V        DE   
Sbjct: 102 AVYGGADIGRQIRGLK----DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLN 157

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  + ++  ++Q       LL +AT  P      ++ +I + K  ++P   K IK   +
Sbjct: 158 MGFLEDIEKIISQVPEQRQTLLFSATMPP------AIKNIGV-KFMKQPEHVK-IKAKEM 209

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--- 520
             + ID+       V S+  + + I  ++ + +      V  R     +     +     
Sbjct: 210 TADLIDQY-----YVRSKDFEKFDIMTRLLDVQTPELTIVFGRTKRRVDELARGLEARGY 264

Query: 521 ----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG +S   + SV+ SFKNG   +L+AT V   G+D+   + +   +      + +
Sbjct: 265 KAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYV 324

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           H++ GR GR  +    +    P    N    L V++N
Sbjct: 325 HRI-GRTGRAGKGGMSVTFVTP----NEMGYLHVIEN 356


>gi|224074379|ref|XP_002304361.1| predicted protein [Populus trichocarpa]
 gi|222841793|gb|EEE79340.1| predicted protein [Populus trichocarpa]
          Length = 361

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 119/287 (41%), Gaps = 44/287 (15%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q    ++   +   +    I G   +  + K+L+        I+IGT 
Sbjct: 19  CLVLAPTRELADQISVVLRDAGEPCGVRSVCIYGGTSKGPQIKSLK----AGVDIVIGTP 74

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPR 433
              +D I+   L L     V++DE  R    G +Q ++  L+   +A  +++ +AT    
Sbjct: 75  GRLKDLIEMNVLHLAEVSFVVLDEADRMLDMGFRQEVRSILSNTCSARQMIMFSAT---- 130

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIP--------INRIDEVIE------RLKVVL 479
                    +D+  + E+     P+K V+          + +I EV+E      RL  +L
Sbjct: 131 -------WPLDVHNLAEEYMDPNPVKVVVGSEDTAANHDVMQIVEVLEDHLRDQRLLALL 183

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +    Y    Q      + ++   ER + +      ++  IHG  +   +   +  FK 
Sbjct: 184 EK----YHKSQQNRVLVFALYQKEAERLDGMLRKSGWNVVSIHGNKAQEQRTKALSLFKK 239

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           G+C L++AT V   G+DV D  ++I           +H++ GR GR 
Sbjct: 240 GSCPLMVATDVAARGLDVPDVEVVINYTFPLTAEDYVHRI-GRTGRA 285


>gi|110740927|dbj|BAE98559.1| eukaryotic protein synthesis initiation factor 4A [Arabidopsis
           thaliana]
          Length = 412

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 125/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 80  IQQAQSGTGKTTTFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 139

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 140 ACVGGTSV----REDQRILQASVHVVVGTPGRVFDMLKRQSLRADNIKMF--VLDEADEM 193

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++    +   P   V + +AT  P  L +T        K   KP        V
Sbjct: 194 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMSKP--------V 238

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 239 RILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 298

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 299 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQ 358

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 359 PENYLHRI-GRSGR 371


>gi|61367710|gb|AAX43036.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
          Length = 407

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|73966209|ref|XP_851852.1| PREDICTED: similar to eukaryotic translation initiation factor 4A,
           isoform 1 isoform 2 [Canis familiaris]
          Length = 406

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|152976234|ref|YP_001375751.1| primosome assembly protein PriA [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152024986|gb|ABS22756.1| primosomal protein N' [Bacillus cytotoxicus NVH 391-98]
          Length = 801

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 262 PFPLTDEQKQVITPILSAITNETYKSFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 321

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQD 388
              L  Q    ++++       V ++   +    +     +I   +  +++G   A+F  
Sbjct: 322 EIALTPQ---MVERFKGRFGSQVAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAIFAP 378

Query: 389 SIQYYKLILVIVDEQHRFGVQQ 410
              +  L ++I+DE+H    +Q
Sbjct: 379 ---FENLGIIIIDEEHEASYKQ 397


>gi|325928093|ref|ZP_08189306.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|325541591|gb|EGD13120.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 458

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 123/292 (42%), Gaps = 44/292 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + ++K      N ++
Sbjct: 43  IAQAPTGSGKTAAFGLGLLQKLDPAVTRAQALVLCPTRELADQVGKQLRKLATGIPNMKL 102

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +V  +TG MP   +  +LE  AH    +++GT    Q+  +   L L     +++DE  R
Sbjct: 103 VV--LTGGMPLGPQLASLE--AH-DPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADR 157

Query: 406 F---GVQQRLKLTQKATAPH--VLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKP 457
               G ++ ++        H   LL +AT  P   RTL    L              ++P
Sbjct: 158 MLDMGFEEPIREIAGRCDKHRQSLLFSAT-FPDSIRTLARELL--------------KEP 202

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHE 512
           ++  +   +   E+ ++   V    ++       +    ES     N R  V+      +
Sbjct: 203 VEITVEGADSAPEIDQQFFEVDPTYRQKAVAGLLLRFNPESSVVFCNTRKEVDEVAGSLQ 262

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            F  S   +HG M   D++ V+  F N +C +L+A+ V   G+DV D S ++
Sbjct: 263 EFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVV 314


>gi|229109595|ref|ZP_04239184.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock1-15]
 gi|228673843|gb|EEL29098.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock1-15]
          Length = 389

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 149/346 (43%), Gaps = 48/346 (13%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           T+ Q+ AI  IL  QD+        I +   G+GKTL  L+ +   +       Q V++A
Sbjct: 22  TEIQKQAIPTILEGQDV--------IAESPTGTGKTLAYLLPLLHKINPEVKQPQVVVLA 73

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L  Q +E ++K+T  T+I    + G    A  ++ +E++      +I+G+     +
Sbjct: 74  PTRELVMQIHEEVQKFTAGTEISGASLIGG---ADIKRQVEKLKK-HPRVIVGSPGRILE 129

Query: 389 SIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            I+  KL +     ++ DE  +   Q+ +   Q        ++ +T   R LV  S    
Sbjct: 130 LIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQD-------VIKSTMRDRQLVFFS---A 179

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWI--CPQIEEKKESN 499
            ++K+ E  A    ++  ++ + R +   ++E   ++    +K  ++     + + K   
Sbjct: 180 TMTKVAEDAARDLAVEPQLVRVTRAESKSLVEHTYIICERREKNDYVRRIMHMGDVKAVA 239

Query: 500 FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F +   R + + E         A +H   S  ++E+ M +F+ G  ++L+AT +   GID
Sbjct: 240 FLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGID 299

Query: 557 VVDASIIIIENAEHFGLA----QLHQLRGRVGRGEEISSCILLYHP 598
           + D + +I     H  L     Q     GR GR  +  + + L  P
Sbjct: 300 IDDLTHVI-----HLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTP 340


>gi|194880138|ref|XP_001974373.1| GG21122 [Drosophila erecta]
 gi|190657560|gb|EDV54773.1| GG21122 [Drosophila erecta]
          Length = 816

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 146/368 (39%), Gaps = 64/368 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA------------AVEA 320
           PT  Q  AI   LQ     NR + I   + GSGKTL  LI + +             V+ 
Sbjct: 411 PTPIQRQAIPIGLQ-----NRDI-IGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQ 464

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+IMAP   LAQQ  E   K+ Q   I   ++ G +    R +   R+  G   I+I
Sbjct: 465 GPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGL---SREEQGFRLRLG-CEIVI 520

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQ--------RLKLTQKATA 420
            T     D ++   L+L     +++DE  R         VQ+         LK   +   
Sbjct: 521 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAE 580

Query: 421 PHVLLM----TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               LM    T     +T++ T+     + ++  +   R+P    I  + +  E  E++ 
Sbjct: 581 DETKLMENFYTKKKYRQTVMFTATMPPAVERLA-RTYLRRPATVYIGSVGKPTERTEQIV 639

Query: 477 VVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            ++ E  K   +   +  K +       N +   +      E    +   +HG      +
Sbjct: 640 YMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQR 699

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVGR 585
           E  + + K+G   +L+AT V   GID+ D S++I     ++ +A+      H++ GR GR
Sbjct: 700 EYALAALKSGAKDILVATDVAGRGIDIKDVSLVI-----NYDMAKTIEDYTHRI-GRTGR 753

Query: 586 GEEISSCI 593
             +    I
Sbjct: 754 AGKTGCAI 761


>gi|254285870|ref|ZP_04960832.1| primosomal protein N` [Vibrio cholerae AM-19226]
 gi|150424052|gb|EDN15991.1| primosomal protein N` [Vibrio cholerae AM-19226]
          Length = 734

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    SQ+     +L+G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 199 PKLNQEQAIA-IAAVNSQQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 258 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 312 FAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 372 KYHHLQLTQRAGNALPTRN 390


>gi|89890308|ref|ZP_01201818.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
 gi|89517223|gb|EAS19880.1| ATP-dependent RNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 425

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 132/303 (43%), Gaps = 51/303 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LA Q  E  K Y + T I   +I G + QA +   + R+  G   +++ T
Sbjct: 76  KALVVTPTRELAIQIDENFKAYAKYTDIRNTVIYGGVKQAQQ---VNRLKSG-IDVLVAT 131

Query: 383 HALFQD----------SIQYYKLILVIVDEQHRFG----VQQRLKLTQKATAPH---VLL 425
                D           I+Y+  +L   D+    G    +++ LKL      PH    L 
Sbjct: 132 PGRLLDLINQGFITLKHIEYF--VLDEADQMLDMGFIHDIKKLLKLL-----PHERQSLF 184

Query: 426 MTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIKTVIIPINRIDE---VIERLKVVL 479
            +AT +P+T+V  S   LGD +   I  +    + ++  I  +N+ ++   +IE L+  L
Sbjct: 185 FSAT-MPKTIVELSRQILGDFERVTIAPEKTTAEKVEQQIYHVNKKNKTKLLIELLETKL 243

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +    +        + +     +V+      E      A IHG  S   ++  + +FK 
Sbjct: 244 LDSTLVF-------SRTKHGANKIVKDL----EKAGIGSAAIHGNKSQAARQRALGAFKE 292

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSCILL 595
           G  + L+AT +   GID+ + S ++  +  +   + +H++ GR GR    G  +S C+L 
Sbjct: 293 GKIQTLVATDIAARGIDIDELSYVVNYDLPNVAESYVHRI-GRTGRAGASGLAVSFCMLE 351

Query: 596 YHP 598
             P
Sbjct: 352 ERP 354


>gi|46447008|ref|YP_008373.1| hypothetical protein pc1374 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400649|emb|CAF24098.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 1161

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 101/196 (51%), Gaps = 31/196 (15%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQD-----MSQKNRMLR-----ILQGDVGSGKTLV 309
           +I Q++L N+P  P++    +IK  L++     +   NR+       IL  D+G GKTL 
Sbjct: 674 EIQQQMLGNLP-CPSREIPKSIKASLRNYQIDGIHWLNRLRGMHLNGILADDMGLGKTLQ 732

Query: 310 ALIAMAA-AVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           A+I +    ++   Q ++++ P  ++     E I K+  N ++ V  + GN  Q  R+K 
Sbjct: 733 AIITLTQYKMDHPKQPSIVVCPTSLVYNWQEE-ITKF--NPKLKVLPVDGNPSQ--RKKL 787

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLI---LVIVDE-QH--RFGVQ--QRLKLTQKAT 419
           L  + +    +II ++ L Q  I++YK +    +I+DE QH    G +  Q +K+ Q   
Sbjct: 788 LNDLDY--YDVIITSYTLLQKDIEFYKTVPFGYIILDEAQHIKNRGTRNAQSVKMIQ--- 842

Query: 420 APHVLLMTATPIPRTL 435
           A H L++T TPI  +L
Sbjct: 843 AAHRLILTGTPIENSL 858


>gi|315649839|ref|ZP_07902922.1| helicase domain protein [Paenibacillus vortex V453]
 gi|315274813|gb|EFU38194.1| helicase domain protein [Paenibacillus vortex V453]
          Length = 633

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 132/316 (41%), Gaps = 43/316 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPI-GILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G+GKT +    + + ++AGG+ ++ AP   ++ +      K + + T   V  + G  P
Sbjct: 308 TGAGKTEMIFPLLQSILDAGGRVLVAAPRRDVVLELAPRLSKAFPEET---VVTLYGGSP 364

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG------VQQRLKL 414
              +R ++          +  TH L +    +    LV++DE   F       +    K 
Sbjct: 365 DRWKRGSI---------TLATTHQLLRFRGAFD---LVVIDEIDAFPYHNDPMLDYAAKG 412

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK---PIKTVIIPINRIDE- 470
             KA   ++ L    P P      + G +  +K+  +  G     P K  I  +NR  + 
Sbjct: 413 ACKAGGKYIYLSATPPAPLQREAAA-GRLPHAKVPARFHGHPLPVPHKLKIPTVNRCLQE 471

Query: 471 ------VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
                 ++  L   LS G + +    +I+          +E F  L      +  I    
Sbjct: 472 KKLPPGLVRNLSASLSRGAQVFLFASRIKH---------IEPFLELLRKAIPNAPIEGTS 522

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE-NAEHFGLAQLHQLRGRV 583
             D ++ S + SF+N   +LL+ TT++E G+ V  + + I++ ++E F  A L Q+ GR 
Sbjct: 523 SIDPNRTSKVMSFRNREIRLLVTTTILERGVTVPKSDVFILDADSELFDEAALIQMAGRA 582

Query: 584 GRGEEISSCILLYHPP 599
           GR ++  +  +++  P
Sbjct: 583 GRSKDDPAGRVVFAAP 598


>gi|292488330|ref|YP_003531212.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora CFBP1430]
 gi|292899529|ref|YP_003538898.1| ATP-independent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291199377|emb|CBJ46494.1| ATP-independent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291553759|emb|CBA20804.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora CFBP1430]
          Length = 459

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 116/291 (39%), Gaps = 61/291 (20%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIV 352
           Q   GSGKT    + +   V+A     QA+++ P   LA Q       + ++T N +I+ 
Sbjct: 46  QAKTGSGKTAAFGLGVMHRVDASQYVTQALVLCPTRELADQVTKELRRLARFTSNIKILT 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G  P   +R +L    H   HI++GT     D +Q   L L     +++DE  R  
Sbjct: 106 --LCGGQPVGAQRDSL---LHA-PHIVVGTPGRILDHLQRETLKLDAINTLVLDEADRML 159

Query: 407 --------------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DISKITE- 450
                           Q R  L   AT P  +   +  I R  +    GD+ D+  I + 
Sbjct: 160 EMGFREDIDAIISHSPQTRQTLLFSATWPQAIAQISQSIQRNPLTIETGDVSDLPAIEQT 219

Query: 451 --KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVER 506
             + A R+ +  +I               +LSE + +  +  C         N +   + 
Sbjct: 220 FYEAASREKLTALI--------------GLLSERQPSSCVVFC---------NTKRECDD 256

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                +    S   +HG +   +++ ++  F NG+C++L+AT V   G+D+
Sbjct: 257 IAYALDKAQISAQPLHGDLEQRERDQMLIRFANGSCRVLVATDVAARGLDI 307


>gi|229527397|ref|ZP_04416789.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae 12129(1)]
 gi|229335029|gb|EEO00514.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae 12129(1)]
          Length = 734

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    SQ+     +L+G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 199 PKLNQEQAIA-IAAVNSQQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 258 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 312 FAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 372 KYHHLQLTQRAGNALPTRN 390


>gi|224373572|ref|YP_002607944.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH]
 gi|223588451|gb|ACM92187.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH]
          Length = 467

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 146/355 (41%), Gaps = 48/355 (13%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           K L  I F  P+  QE AI  +LQ          + Q   G+GKT    + +   +E G 
Sbjct: 14  KRLEEIGFEKPSPIQEKAIPVVLQGKDI------VAQAQTGTGKTAAFGLPILNMLEKGQ 67

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH-GQAHIIIG 381
           +A+I+ P   LA Q  E I ++ ++  I    + G    + +      I H   + +I+ 
Sbjct: 68  KALIITPTRELAIQVSEEIFRFGKHLGIHTATVYGGSSYSRQ------INHIKNSEVIVA 121

Query: 382 THALFQDSIQYYKL-------ILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTAT-PI 431
           T     D +   K+       +L   DE    G    +K   K    +   LL +AT P 
Sbjct: 122 TPGRLIDLLSSGKIDIAPEYVVLDEADEMLDMGFLDDIKEIFKYVPSNRQTLLFSATMPK 181

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEGKKAYW 487
           P  +L  T L D +  +IT+K    + IK     I+   R D +I RL +   +  KA  
Sbjct: 182 PILSLAKTILKDPEFIQITKKEVTNENIKEYFYVIDEHERNDALI-RL-IDYKQPNKAIV 239

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI----IHGRMSDIDKESVMDSFKNGTCK 543
            C     + + +  +V +        F S +      +HG M    +E V+  FK    +
Sbjct: 240 FC-----RTKKDVDTVAD--------FLSGVGFDAKGLHGDMDQRKREEVIKGFKGNRIE 286

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +L+AT V   G+DV D + +   +      + +H++ GR GR  +    I L  P
Sbjct: 287 ILVATDVAARGLDVNDVTHVFNYHLPLDPESYVHRI-GRTGRAGKEGMAISLVTP 340


>gi|193666978|ref|XP_001948493.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 666

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 144/351 (41%), Gaps = 44/351 (12%)

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYE 339
           +S +N M+ I Q   GSGKTL  ++     +          G   +++AP   LAQQ  +
Sbjct: 157 LSGRN-MVGIAQ--TGSGKTLAYMLPAILHINHQPRLLRYDGPIVLVLAPTRELAQQIQQ 213

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYK 394
               +  +T +    + G  P+  +   LER       I+I T       L +++    +
Sbjct: 214 VAVSFGTSTFVRNTCVFGGAPKGPQVDDLER----GVEIVIATPGRLIDFLERNTTNLKR 269

Query: 395 LILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
              +++DE  R     F  Q R  + Q      VL+ +AT  P    L      D  ++ 
Sbjct: 270 CTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPPEVKNLAEEFLDDYIQVN 329

Query: 450 EKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-------R 501
                   + ++ +  N  I +V++       E +K Y +   I  + ++         R
Sbjct: 330 --------VGSLNLSANHNISQVVDVCDDYEKE-QKLYALLTDIFSQPDNKTIIFVETKR 380

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           SV      ++ +   SI I HG  S  +++  ++ F++G   +L+AT V   G+DV D  
Sbjct: 381 SVDNIVKLVNRNGWRSIGI-HGNKSQNERDHTLNQFRSGQANILVATDVAARGLDVDDVK 439

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +I  +  +     +H++ GR GR     +      P  ++ +   +SVL+
Sbjct: 440 YVINFDYPNSSEDYVHRI-GRTGRSSRTGTAFTFVTPSNARQAKDLISVLQ 489


>gi|168235783|ref|ZP_02660841.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168819458|ref|ZP_02831458.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194736572|ref|YP_002114683.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712074|gb|ACF91295.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291228|gb|EDY30581.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|205343740|gb|EDZ30504.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320085851|emb|CBY95627.1| ATP-dependent RNA helicase DBP2 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 457

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 138/326 (42%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI------ 399
              + G  P   +R +L+       HII+ T     D +Q   +      ILV+      
Sbjct: 105 T--LCGGQPFGAQRDSLQH----APHIIVATPGRLLDHLQKETVSLDALHILVMDEADRM 158

Query: 400 --------VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                   +DE  RF  + R  L   AT P  +   +  + +  +      I+I  +   
Sbjct: 159 LDMGFSDAIDEVIRFAPETRQTLLFSATWPDAIAAISGRVQQQPI-----RIEIDTVDAL 213

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           PA  +             E I  L+ +LS+ + A  +   +    + + ++V +  N++ 
Sbjct: 214 PAIEQQFFE-----TSAHEKISLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALNAVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 Q---SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELVVNYELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFC 345


>gi|71024093|ref|XP_762276.1| hypothetical protein UM06129.1 [Ustilago maydis 521]
 gi|74699014|sp|Q4P184|FAL1_USTMA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|46101778|gb|EAK87011.1| hypothetical protein UM06129.1 [Ustilago maydis 521]
          Length = 397

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 130/316 (41%), Gaps = 51/316 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+M  +++      QA++++P   LA Q    +        +   
Sbjct: 65  IAQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQIQSVVLALGDYLNVQCH 124

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        + + ++ +GQ HI+ GT     D I+   L        IL   DE   
Sbjct: 125 ACIGGTSVG---EDIRKLDYGQ-HIVSGTPGRVYDMIRRRHLRTKNIKMLILDESDELLN 180

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V+L++AT     L +TS       K    P        V I
Sbjct: 181 MGFKDQIYDVYRYLPPSTQVVLLSATLPQDVLEMTS-------KFMTDP--------VRI 225

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K      +K  W    + +  ++          N R  V+  ++  + 
Sbjct: 226 LVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLSAKMKE 285

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAE 569
               ++ +HG M   +++ VM  F+ G+ ++LI T V   GID+ + S++I      N E
Sbjct: 286 NNFQVSSMHGEMQQKERDEVMAEFRQGSSRVLITTDVWARGIDIANISLVINYDLPTNRE 345

Query: 570 HFGLAQLHQLRGRVGR 585
           ++    +H++ GR GR
Sbjct: 346 NY----IHRI-GRSGR 356


>gi|323349512|gb|EGA83736.1| Fal1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 399

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 136/318 (42%), Gaps = 52/318 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I +  A++      QA+I++P   LA Q  + +K       +   
Sbjct: 64  IAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAF 123

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRFGV 408
            ITG        K +++  HG    + GT     D I     Q   + ++++DE     +
Sbjct: 124 AITGGKTLKDDLKKMQK--HG-CQAVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADEL-L 179

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            + L   Q+    + +        + +V+++  + DI ++T K     P+K ++      
Sbjct: 180 SETLGFKQQI---YDIFAKLPKNCQVVVVSATMNKDILEVTRKFMN-DPVKILV------ 229

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL------------------ 510
               +R ++ L EG K Y +     +K+E  F ++ + ++SL                  
Sbjct: 230 ----KRDEISL-EGIKQYVVNV---DKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWL 281

Query: 511 -HEHFTSSIAII--HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                 S+ A++  HG M   +++ VM+ F+ G  ++LI+T V   GIDV   S++I  +
Sbjct: 282 SQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYD 341

Query: 568 AEHFGLAQLHQLRGRVGR 585
                   +H++ GR GR
Sbjct: 342 LPEIIENYIHRI-GRSGR 358


>gi|283769452|ref|ZP_06342350.1| conserved hypothetical protein [Bulleidia extructa W1219]
 gi|283103977|gb|EFC05362.1| conserved hypothetical protein [Bulleidia extructa W1219]
          Length = 373

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH--FGLAQLHQLRGRVGR 585
           +KE V+ SF+ G C LL  TTV+E GI  ++   + +  A+H  F  A L Q+ GRVGR
Sbjct: 280 NKEEVLTSFRKGKCHLLFCTTVMERGI-TIEGVDVCVWQAQHIVFDQASLIQIAGRVGR 337


>gi|259483726|tpe|CBF79353.1| TPA: ATP-dependent RNA helicase dbp3 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5AWA6] [Aspergillus
           nidulans FGSC A4]
          Length = 413

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 125/296 (42%), Gaps = 47/296 (15%)

Query: 300 GDVGSGKTLV-ALIAMAAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   L  +   ++   +       AV+++P   LA Q Y+ + K+ +   I 
Sbjct: 117 AETGSGKTLAFGLPCLKKVLDLKTKQKSCRPLAVVISPTRELAMQIYDQLVKFAEKVDIQ 176

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF 406
           V  I G + +  +R+AL+      A +++ T    +D     S+   ++  +++DE  R 
Sbjct: 177 VACIFGGVKKDEQREALK-----SAAVVVATPGRLKDLQNDGSLDLGRVKYLVLDEADRM 231

Query: 407 ---GVQQRLK---LTQKATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPI 458
              G +Q +K        +    ++ TAT  PI R L  T +       I   P+     
Sbjct: 232 LDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLASTFMTSPVTVTIGGDPSADPRA 291

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----------FRSVVERFN 508
            +      RI +V+E   VV    K+   +  QI  + +            ++    R  
Sbjct: 292 NS------RIKQVVE---VVKPHEKEQRLV--QILNRHQRGTPDKVLAFCLYKKEAMRVE 340

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            L       +A IHG +S  ++   +++FK+G   +L+AT V   G+D+    +++
Sbjct: 341 RLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVV 396


>gi|229587838|ref|YP_002869957.1| putative ATP-dependent DNA helicase [Pseudomonas fluorescens SBW25]
 gi|229359704|emb|CAY46552.1| putative ATP-dependent DNA helicase [Pseudomonas fluorescens SBW25]
          Length = 647

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 159/383 (41%), Gaps = 55/383 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            GSGK+L   ++   AV      V+++P+  L Q    F++++         I  G++  
Sbjct: 37  TGSGKSLCYQLS---AVLLPHLTVVVSPLLALMQDQLGFLQRHG--------ISAGSIDS 85

Query: 362 AHRR----KALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQ 409
           A  R    + + R   G+  I++ +     +  F++ +Q  ++ L++VDE H    +G  
Sbjct: 86  AQSRDEANEVMARARSGELKILMISVERLKNERFRNFLQSVQISLLVVDEAHCISEWGHN 145

Query: 410 QR---LKL---TQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGRKPIKTVI 462
            R   LKL    ++   P  LL+TAT  P+ +  + +   I    +      R  +  ++
Sbjct: 146 FRPDYLKLPDYQRQFNIPQALLLTATATPKVIADMQAKFAIAPDDVVTTGFYRPNLNLLV 205

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
            P++  D+   RL   ++E      I     +K        + R     E +       H
Sbjct: 206 EPVSGSDKR-RRLVEWMNERANQPSIVYVTLQKTAEQIAEHLNRNGIQAEAY-------H 257

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQ 578
             +    +E +   F  G    ++AT    +GID  D     I N  HF L +      Q
Sbjct: 258 AGLPHDKREGIQQRFMGGRSHCIVATIAFGMGIDKSD-----IRNVVHFDLPKSIENYSQ 312

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
             GR GR  + S C++L     +++S   L+VL+N   G    E+D  +R   E+   + 
Sbjct: 313 EIGRAGRDGQPSDCLVL----ANRDS---LNVLENFVYGD-TPEQDGIRRVLDELQAARS 364

Query: 639 SGMPKFLIAQPELHDSLLEIARK 661
            G  +FL+     H ++ E+  K
Sbjct: 365 EGQWEFLLRSLSDHSNIRELPLK 387


>gi|154308886|ref|XP_001553778.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10]
 gi|160385734|sp|A6S4N4|FAL1_BOTFB RecName: Full=ATP-dependent RNA helicase fal1
 gi|150852597|gb|EDN27789.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10]
          Length = 399

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 136/341 (39%), Gaps = 57/341 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + + ++ +GQ HI+ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVG---EDIRKLDYGQ-HIVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT     L +T
Sbjct: 157 MIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMT 216

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +       K    P        V I + R +  +E LK      +K  W    + +  ++
Sbjct: 217 T-------KFMTDP--------VRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDT 261

Query: 499 ----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T
Sbjct: 262 LTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIST 321

Query: 549 TVIEVGIDVVDASIIIIE----NAEHFGLAQLHQLRGRVGR 585
            V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 322 DVWARGIDVQQVSLVINYDLPVNRENY----IHRI-GRSGR 357


>gi|55821415|ref|YP_139857.1| primosome assembly protein PriA [Streptococcus thermophilus LMG
           18311]
 gi|55737400|gb|AAV61042.1| primosomal replication factor Y [Streptococcus thermophilus LMG
           18311]
          Length = 798

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/400 (20%), Positives = 156/400 (39%), Gaps = 112/400 (28%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   +  G  A+++ P I +  Q    FI ++      +V I+
Sbjct: 285 LLEGVTGSGKTEVYLHLIERTLAMGKTAIVLVPEISLTPQMTNRFISRFGD----LVAIM 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ--DSIQYYKLILVIVDEQH-------- 404
              +    +     ++  GQA +++G   A+F   D+I       +I+DE+H        
Sbjct: 341 HSGLSDGEKFDEWRKVRSGQAKVVVGARSAIFAPLDNIG-----AIIIDEEHEATYKQES 395

Query: 405 --RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP---------- 452
             R+  +    L  K+    ++L +ATP   +      G     ++TE+           
Sbjct: 396 NPRYHARDVALLRSKSHGAILVLGSATPSIESRARAQKGVYHFFELTERANPSAKIPQVE 455

Query: 453 -------AGRKPIKTVIIPINRIDEVIERL----KVVLSEGKKAYW-------------- 487
                   GR+       P+  ++++ ERL    +VVL   ++ Y               
Sbjct: 456 VVDFKDFVGRQEASDFTPPL--LEKIRERLARKEQVVLLLNRRGYSSFVMCRDCGYVDDC 513

Query: 488 -----------------------------ICPQIEEKKESNFRSVVER-FNSLHEHFTSS 517
                                        +CP  + ++   + +  ++ ++ L E F  +
Sbjct: 514 PNCDISLTLHMDTKTMNCHYCDFQKAIPNVCPNCQSRQIRYYGTGTQKAYDQLTELFPEA 573

Query: 518 IAIIHGRMSDIDK-------ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE- 569
             I   RM D+D        E ++++F +G   +L+ T +I  G+D  + +++ + NA+ 
Sbjct: 574 RVI---RM-DVDTTRKKGAHEKLLETFGSGKADILLGTQMIAKGLDFPNVTLVGVLNADT 629

Query: 570 -----HFGLAQ-----LHQLRGRVGRGEEISSCILLYHPP 599
                 F  A+     L Q+ GR GR ++    I+  + P
Sbjct: 630 SLNLPDFRSAERTFQLLTQVAGRAGRADKEGEVIIQTYNP 669


>gi|332798288|ref|YP_004459787.1| DEAD/DEAH box helicase domain-containing protein [Tepidanaerobacter
           sp. Re1]
 gi|332696023|gb|AEE90480.1| DEAD/DEAH box helicase domain protein [Tepidanaerobacter sp. Re1]
          Length = 529

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 124/283 (43%), Gaps = 44/283 (15%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK---KYTQNTQI 350
           I Q   G+GKT    + ++ M    +   QA+I+ P   LA Q  E +K   KY +  +I
Sbjct: 45  IGQAQTGTGKTAAFGLPILDMIDTDDKNQQAIILCPTRELAIQVAEELKALSKYKEGMKI 104

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH- 404
           +   + G  P   +  AL+R       IIIGT     D ++ + L L     V++DE   
Sbjct: 105 LP--VYGGQPIERQIHALKR----GVQIIIGTPGRVMDHMRRHTLKLQNTKIVVLDEADE 158

Query: 405 ------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGR 455
                 R  +++ L+ T KA     L+ +AT IP+ ++  +   L +  + K+  K    
Sbjct: 159 MLDMGFREDIEKILEDTPKAR--QTLMFSAT-IPKPILELAERYLNNPQLIKVVHKELTV 215

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             ++     +   D+V E L  ++       +  P +       F +  +R + L E   
Sbjct: 216 PSVEQYYFEVKERDKV-EALSRLID------FYNPNLA----LVFCNTKKRVDELMEQLQ 264

Query: 516 S---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           +   S   +HG MS   ++ VM  FKNGT  +L+AT V   G+
Sbjct: 265 ARGYSADGLHGDMSQSQRDRVMTKFKNGTIDILVATDVAARGL 307


>gi|319941925|ref|ZP_08016246.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Sutterella wadsworthensis 3_1_45B]
 gi|319804578|gb|EFW01448.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Sutterella wadsworthensis 3_1_45B]
          Length = 503

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 146/358 (40%), Gaps = 54/358 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDV------GSGKT------LVALIAMAAAVEA 320
           PT  QE AI  +L            + GDV      G+GKT      L+A I   A    
Sbjct: 51  PTPIQEKAIPVVL------------MGGDVMGAAQTGTGKTAGYGLPLIARILPKANTSM 98

Query: 321 GG-----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERI 371
                  +A+I+AP   LA Q  + + KY  +T +   ++ G +   PQA   R+ +E +
Sbjct: 99  SPARHPVRALILAPTRELADQVSDNLVKYCADTPLRAGVVYGGVDIRPQADMLRRGVEIL 158

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF-------GVQQRLKLTQKATAPHVL 424
                 ++     + Q S+   ++ +V++DE  R         + + L+L  +     + 
Sbjct: 159 TATPGRLL---DHVQQRSVNLSQVEIVVLDEADRMLDMGFLPDISRILQLLPQHRQSLLF 215

Query: 425 LMTATPIPRTLVLTSLGD-IDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLS 480
             T +P  + L  + L D   + ++  + +  + +   +  +N   + D +I+ LK    
Sbjct: 216 SATFSPEIKKLAKSFLKDNPTVIEVARENSTAETVTQELFAVNDREKTDVLIDMLKTRGP 275

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           EG     +   +      N +    R     E    +   IHG  +  +++  ++ FKNG
Sbjct: 276 EGTPLTQVLVFV------NAKITCRRLARTLERVGINADAIHGDKTQEERQVALEGFKNG 329

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              +L+AT V   G+D+ +   +I  +  +     +H++ GR GR        +L  P
Sbjct: 330 AIHVLVATDVAARGLDIKELPFVINYDVPYSAEDYVHRI-GRTGRAGAKGVATMLATP 386


>gi|311104225|ref|YP_003977078.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
 gi|310758914|gb|ADP14363.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
          Length = 493

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/292 (20%), Positives = 120/292 (41%), Gaps = 33/292 (11%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q YE +K+Y++ T +   ++ G +    +++AL R       +++ T
Sbjct: 95  RALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEALRR----GCEVLVAT 150

Query: 383 HALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT-LV 436
                    Q ++   ++ ++++DE  R      L   ++       ++   P  R  L+
Sbjct: 151 PGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLER-------IIRLLPAQRQGLL 203

Query: 437 LTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            ++    +I K+     GR     P++  +   N     I ++   +    K   +   +
Sbjct: 204 FSATFSNEIRKL-----GRSYLNHPVEIEVAARNATANTITQIAYKMPSDAKRAAVVHLV 258

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + +        SN +    R     E        IHG  +  D+   +++FK G  ++L+
Sbjct: 259 KSRGLNQVIVFSNTKIGTARLARDLERDGVKAESIHGDKTQADRMKALEAFKAGELEVLV 318

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT V   G+DV     +I  +  +     +H++ GR GR       I L+ P
Sbjct: 319 ATDVAARGLDVAGVPCVINYDLPYNAEDYVHRI-GRTGRAGASGEAIALFTP 369


>gi|297846156|ref|XP_002890959.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336801|gb|EFH67218.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 539

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 131/317 (41%), Gaps = 48/317 (15%)

Query: 302 VGSGKTLVALIAMAAAV-----EAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKTL   I     V     + GG         ++++P   LA Q  + + +  +   
Sbjct: 162 TGSGKTLAFGIPAIMHVLKKNKKLGGGSKNVNPTCLVLSPTRELAVQISDVLSEAGEPCG 221

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +    + G    + +R  +  I  G   I+IGT    +D I+  +L L     V++DE  
Sbjct: 222 LKSICVYGG---SSKRPQINAIRSG-VDIVIGTPGRLRDLIESNELRLSDVSFVVLDEAD 277

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL-TSLGDIDISKITEKPAGRKPIKTVII 463
           R        L      P   +++ T   R +V+ ++   +D+ K+ ++     PIK VI 
Sbjct: 278 RM-------LDMGFEEPVRFILSKTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVVIG 330

Query: 464 PIN-----RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---------FRSVVERFNS 509
            ++      + ++IE    VL E  +   +   +E+  +S          ++   ER   
Sbjct: 331 SVDLAANHDVMQIIE----VLDERARDQRLVALLEKYHKSQKNRVLVFALYKVEAERLER 386

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
             +        IHG  +  ++   +  FK G+C LL+AT V   G+D+ D  ++I  +  
Sbjct: 387 FLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYSFP 446

Query: 570 HFGLAQLHQLRGRVGRG 586
                 +H++ GR GR 
Sbjct: 447 LTTEDYVHRI-GRTGRA 462


>gi|197099748|ref|NP_001126779.1| eukaryotic initiation factor 4A-I [Pongo abelii]
 gi|73621051|sp|Q5R5F5|IF4A1_PONAB RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|55732624|emb|CAH93011.1| hypothetical protein [Pongo abelii]
          Length = 406

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|319939694|ref|ZP_08014053.1| ATP-dependent RNA helicase [Streptococcus anginosus 1_2_62CV]
 gi|319811283|gb|EFW07589.1| ATP-dependent RNA helicase [Streptococcus anginosus 1_2_62CV]
          Length = 447

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 135/317 (42%), Gaps = 35/317 (11%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYT--QNTQIIVEIIT 356
            GSGKT   L+ +   +       Q VI AP   LA+Q Y+  ++     + +I V    
Sbjct: 47  TGSGKTHTFLLPIFQKLNEDADSVQVVITAPSRELARQIYQAARQIAAFSDKEIRVAHYV 106

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G      + + + +++  Q HI+IGT     D ++   L    + + H F V +      
Sbjct: 107 GG---TDKNRQIGKLSSSQPHIVIGTPGRIYDLVESGDLA---IHKAHTFVVDE-----A 155

Query: 417 KATAPHVLLMT----ATPIPRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRI 468
             T     LMT    A+ +P+ L           K+  +P  +K    P+   I     I
Sbjct: 156 DMTLDMGFLMTVDKIASSLPKDLQFLVFSATIPQKL--QPFLKKYLSNPVIEQIKTKTVI 213

Query: 469 DEVIERLKVVLSEGK----KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAII 521
            + IE   ++ ++G+    + Y I   ++      F +   R + LH + T+    +A I
Sbjct: 214 SDTIENW-LISTKGRDKNAQIYEITQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKI 272

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG ++  +++ +M+  KN   + ++AT +   GID+   S +I +         +H++ G
Sbjct: 273 HGDIAPRERKRIMNQVKNLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-G 331

Query: 582 RVGRGEEISSCILLYHP 598
           R GR     + I LY P
Sbjct: 332 RTGRNGLSGTAITLYQP 348


>gi|269104380|ref|ZP_06157076.1| ATP-dependent RNA helicase DbpA [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161020|gb|EEZ39517.1| ATP-dependent RNA helicase DbpA [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 437

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 134/318 (42%), Gaps = 34/318 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I QG  GSGKT    + +   +       Q +++ P   LA Q  + I++  +    I V
Sbjct: 19  IAQGKTGSGKTAAFGLGLLNNLNVKRFRVQTLVLCPTRELADQVAKEIRRLARAIHNIKV 78

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G MP   +  +LE   HG AHII+GT    ++ ++   L L     +++DE  R  
Sbjct: 79  LTLCGGMPFGPQIGSLE---HG-AHIIVGTPGRVEEHLRKGNLSLDNLNTLVLDEADRML 134

Query: 407 --GVQQRLKLTQKATAP---HVLLMTAT-PIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
             G Q  +       AP     LL +AT P     +  S+ +       E       I  
Sbjct: 135 EMGFQDAIDAVIDC-APKQRQTLLFSATYPTQIASIANSIMNKPAMVKVEATHDNSSISQ 193

Query: 461 VIIPINRIDEVIERLKVVLSEG--KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
               ++  +E ++ ++++L++   + A   C    E +E     V E F++L        
Sbjct: 194 HFYKVDNNEERMDAVRLLLAKHHPESAVIFCNTKREAQEVADTLVDEGFSAL-------- 245

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG +   +++  +    N +C +L+AT V   G+D+     +I  +        +H+
Sbjct: 246 -ALHGDLEQRERDRTLVRLANKSCSILVATDVAARGLDIDALDAVINYHLARDTEVHVHR 304

Query: 579 LRGRVGR-GEEISSCILL 595
           + GR GR G +  +C L 
Sbjct: 305 I-GRTGRAGSKGIACSLF 321


>gi|148233734|ref|NP_001085314.1| eukaryotic translation initiation factor 4A1 [Xenopus laevis]
 gi|46329822|gb|AAH68800.1| LOC443739 protein [Xenopus laevis]
 gi|76780122|gb|AAI06280.1| LOC443739 protein [Xenopus laevis]
          Length = 406

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 128/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDMKATQALVLAPTRELAQQIQKVVMALGDYMGAGCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQSEAPHIVVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK ++   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLSSNAQVVLLSAT-MP----------ADVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|6320224|ref|NP_010304.1| Fal1p [Saccharomyces cerevisiae S288c]
 gi|2500524|sp|Q12099|FAL1_YEAST RecName: Full=ATP-dependent RNA helicase FAL1; AltName:
           Full=Translation initiation factor four A-like protein 1
 gi|160385737|sp|A6ZXY5|FAL1_YEAS7 RecName: Full=ATP-dependent RNA helicase FAL1; AltName:
           Full=Translation initiation factor four A-like protein 1
 gi|840874|emb|CAA89846.1| unknown [Saccharomyces cerevisiae]
 gi|1216228|emb|CAA65213.1| orf:PZC399 [Saccharomyces cerevisiae]
 gi|1431450|emb|CAA98842.1| FAL1 [Saccharomyces cerevisiae]
 gi|51830220|gb|AAU09684.1| YDR021W [Saccharomyces cerevisiae]
 gi|151942009|gb|EDN60365.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|256273263|gb|EEU08206.1| Fal1p [Saccharomyces cerevisiae JAY291]
 gi|285811043|tpg|DAA11867.1| TPA: Fal1p [Saccharomyces cerevisiae S288c]
          Length = 399

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 136/318 (42%), Gaps = 52/318 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I +  A++      QA+I++P   LA Q  + +K       +   
Sbjct: 64  IAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAF 123

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRFGV 408
            ITG        K +++  HG    + GT     D I     Q   + ++++DE     +
Sbjct: 124 AITGGKTLKDDLKKMQK--HG-CQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADEL-L 179

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            + L   Q+    + +        + +V+++  + DI ++T K     P+K ++      
Sbjct: 180 SETLGFKQQI---YDIFAKLPKNCQVVVVSATMNKDILEVTRKFMN-DPVKILV------ 229

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL------------------ 510
               +R ++ L EG K Y +     +K+E  F ++ + ++SL                  
Sbjct: 230 ----KRDEISL-EGIKQYVVNV---DKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWL 281

Query: 511 -HEHFTSSIAII--HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                 S+ A++  HG M   +++ VM+ F+ G  ++LI+T V   GIDV   S++I  +
Sbjct: 282 SQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYD 341

Query: 568 AEHFGLAQLHQLRGRVGR 585
                   +H++ GR GR
Sbjct: 342 LPEIIENYIHRI-GRSGR 358


>gi|294899270|ref|XP_002776564.1| helicase with zinc finger protein motif, putative [Perkinsus
           marinus ATCC 50983]
 gi|239883606|gb|EER08380.1| helicase with zinc finger protein motif, putative [Perkinsus
           marinus ATCC 50983]
          Length = 1069

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 13/81 (16%)

Query: 287 DMSQKNRMLRILQGD-------VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY- 338
           D  QK  +LR+ QGD         +GKT VA  A+A A++ GG+A+  +PI  L+ Q Y 
Sbjct: 97  DDFQKRAVLRVSQGDSVFVAAHTSAGKTAVAEYAIADAIKQGGRAIYTSPIKALSNQKYR 156

Query: 339 EFIKKYTQNTQIIVEIITGNM 359
           EF +K+       V ++TG++
Sbjct: 157 EFTQKFDS-----VGVVTGDV 172


>gi|188587881|ref|YP_001922673.1| putative ATP-dependent RNA helicase RhlE [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498162|gb|ACD51298.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 432

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 148/348 (42%), Gaps = 48/348 (13%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  E    Y+++T I   +I G + Q    K   RI      I+I T
Sbjct: 77  KALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQ----KPQTRILGEGVDILIAT 132

Query: 383 HALFQDSI--QYYKLILV---IVDEQHRFGVQQRLKLTQKATA--PHV---LLMTATPIP 432
                D I  +Y  L  V   ++DE  R      ++  +K  A  P V   LL +AT +P
Sbjct: 133 PGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKVRQNLLFSAT-MP 191

Query: 433 ---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWI 488
              ++LV + L D              P+K  + P++  ID + + +  V  + KK+  +
Sbjct: 192 SEVKSLVNSILKD--------------PVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLV 237

Query: 489 CPQIEEKKESNFRSVVERFNS------LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
               +E  +S       ++ +      L +  T S AI HG  S   ++  + +FK G  
Sbjct: 238 HLLKDESIKSLLVFSRTKYGANNIVKDLAKTGTESQAI-HGNKSQNARQLALSNFKEGKI 296

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSCILLYHP 598
           ++L+AT +   GIDV   S +I  +        +H++ GR GR    G  IS C +    
Sbjct: 297 RVLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRI-GRTGRAGNSGVAISFCDVDEKS 355

Query: 599 PLSKNSYT---RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
            L     T    + V+KN E   +    +  QRKE +      +  PK
Sbjct: 356 SLKDIEKTIGKNIPVMKNVEFERIAITREPAQRKEADKKTTDANKKPK 403


>gi|16762340|ref|NP_457957.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143828|ref|NP_807170.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213053440|ref|ZP_03346318.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213426203|ref|ZP_03358953.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213650492|ref|ZP_03380545.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213852555|ref|ZP_03382087.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289828424|ref|ZP_06546306.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25512821|pir||AF0938 primosomal protein replication factor [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504644|emb|CAD09528.1| primosomal protein replication factor [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139464|gb|AAO71030.1| primosomal protein replication factor [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 732

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNTPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|327485152|gb|AEA79559.1| Helicase PriA essential for oriC/DnaA- independent DNA replication
           [Vibrio cholerae LMA3894-4]
          Length = 734

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    SQ+     +L+G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 199 PKLNQEQAIA-IAAVNSQQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 258 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 312 FAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 372 KYHHLQLTQRAGNALPTRN 390


>gi|310644788|ref|YP_003949547.1| dead/deah box helicase domain protein [Paenibacillus polymyxa SC2]
 gi|309249739|gb|ADO59306.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
          Length = 481

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 132/321 (41%), Gaps = 28/321 (8%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKT    I +   V   E   QA+I+ P   LA Q  E I    +  +I   
Sbjct: 45  VAKSQTGSGKTAAYGIPLCELVDWNENKPQALILTPTRELALQVTEDITNIGRFKRIKAT 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI--VDEQHR 405
            + G  P   ++  L++    + H+ +GT     D I+   L       LVI   DE   
Sbjct: 105 PLYGKHPFHIQKAELKQ----RTHVAVGTPGRVLDHIERGTLSLNRIAYLVIDEADEMLN 160

Query: 406 FG-VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DISKITEKPAG--RKPIKTV 461
            G ++Q   + Q      V ++ +   P  +   S   + D  +I  K  G     I   
Sbjct: 161 MGFIEQVQSIIQALPNDRVTMLFSATFPEDVAKLSRKYMNDPVEIEIKATGVTTATIDHS 220

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           +I +   D++     +++ E   +  I  + +E  ++ FR++ +               I
Sbjct: 221 LIQVREADKLALLQDLLVVENPDSCIIFCRTQEHVDTLFRALAD--------LEYPCDRI 272

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG M   ++  VM++F+ G  + LIAT V   GID+ + + +I  +      + +H+  G
Sbjct: 273 HGGMEQDERFEVMNAFRRGQFRYLIATDVAARGIDITNITHVINYDIPLEKESYVHRT-G 331

Query: 582 RVGRGEEISSCILLYHPPLSK 602
           R GR  +    I L  P  SK
Sbjct: 332 RTGRAGKTGKAITLITPKDSK 352


>gi|300716861|ref|YP_003741664.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299062697|emb|CAX59817.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 459

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 125/284 (44%), Gaps = 33/284 (11%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIV 352
           Q   GSGKT    + +   ++      Q++++ P   LA Q       + ++  N +I+ 
Sbjct: 46  QAKTGSGKTAAFGLGVLHRIDVTQFVTQSLVLCPTRELADQVAKELRRLARFAANIKILT 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   +R +L    H   HI++GT     D ++   L L     +++DE  R  
Sbjct: 106 --LCGGQPMGAQRDSL---VHA-PHIVVGTPGRILDHLKRETLKLDQIGTLVLDEADRM- 158

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
               L++  +     ++     P  R TL+ ++    DI++I++    R+P+      ++
Sbjct: 159 ----LEMGFREDIEEII--KYCPASRQTLLFSATWPQDIARISQN-IQREPVAVETDVVS 211

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------RSVVERFNSLHEHFTSSIAI 520
            +  + +R     +  K    I    +EK  S        R   +   +L     S++A+
Sbjct: 212 DLPTIDQRFYEAGAREKLTALIGLLSDEKPSSCVVFCNTKRECDDVAYALDSAKISALAL 271

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            HG +   D++ V+  F NG+C++L+AT V   G+D+   ++++
Sbjct: 272 -HGDLEQRDRDQVLIQFANGSCRVLVATDVAARGLDIKSLAMVV 314


>gi|182677108|ref|YP_001831254.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182632991|gb|ACB93765.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 484

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 140/348 (40%), Gaps = 43/348 (12%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           K+ Q +      SPT  Q  AI   L        +L I Q   G+GKT    + M + +E
Sbjct: 11  KVLQAVAATGYTSPTPIQAEAIPHALAGRD----ILGIAQ--TGTGKTAAFTLPMLSRLE 64

Query: 320 AG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
            G       + +I+ P   LA Q  E   +Y  N ++ V ++ G +  A +   + R   
Sbjct: 65  QGRARARMPRTLILEPTRELAAQVEESFARYGINHKLNVALLIGGVSFAEQENKIMR--- 121

Query: 374 GQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMT 427
             A ++I T     D  +  KL+L     +++DE  R        +      P +  +  
Sbjct: 122 -GADVLIATPGRLLDFSERGKLLLTGIEILVIDEADR--------MLDMGFIPDIERICK 172

Query: 428 ATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
             P  R TL  ++    +I+++TE      P++  +   +     I +  V  + G    
Sbjct: 173 LVPFTRQTLFFSATMPPEITRLTETFL-HNPVRIEVARASSTATTITQGLVASAHGPAKR 231

Query: 487 WICPQIEEKKES---------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
               Q+    E+           R V     SL +H  S+ A+ HG M    + + +D+F
Sbjct: 232 ETLRQLIRGAENLKNAIIFCNRKRDVAVLHKSLQKHGFSAGAL-HGDMDQRARMTSLDAF 290

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           K+G   LL+ + V   G+D+ D S +   +        +H++ GR GR
Sbjct: 291 KSGDVNLLVCSDVAARGLDIPDVSHVFNFDVPTHAEDYVHRI-GRTGR 337


>gi|153845038|ref|ZP_01993724.1| primosomal protein N' [Vibrio parahaemolyticus AQ3810]
 gi|149745159|gb|EDM56410.1| primosomal protein N' [Vibrio parahaemolyticus AQ3810]
          Length = 275

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 19/189 (10%)

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQN 347
           SQ      +L+G  GSGKT V L  +   +E G QA+++ P IG+  Q     I ++ + 
Sbjct: 15  SQTGFACYLLEGVTGSGKTEVYLNLIKPVLEKGKQALVLVPEIGLTPQT----INRFKRR 70

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + V++I   + +  R  A        A IIIGT +       +  L ++IVDE+H   
Sbjct: 71  FNVPVDVIHSGLNETERLNAWLSARDKAAGIIIGTRSALLAP--FADLGIIIVDEEHDTS 128

Query: 408 VQQRLKL-----------TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            +Q+  L             K   P ++L +ATP   TL     G      +T++     
Sbjct: 129 YKQQDSLRYHARDVAVMRAHKEQVP-IVLGSATPALETLHNALSGKYHHLTLTQRAGSAV 187

Query: 457 PIKTVIIPI 465
           P    ++ +
Sbjct: 188 PTSNKVLDV 196


>gi|312899136|ref|ZP_07758514.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
 gi|310619803|gb|EFQ03385.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
          Length = 419

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 135/326 (41%), Gaps = 27/326 (8%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           PT  QE A+   L+  +       ++Q   G+GKTL  L+ +   ++   +  QA+IMAP
Sbjct: 26  PTAVQEQAVPAALKGHNL------LVQAQTGTGKTLAFLLPIFQGIKKDVSMTQALIMAP 79

Query: 330 IGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              L++Q       +T  T + I+ +I G   +   +K      H +  +IIGT     D
Sbjct: 80  TRELSEQLATVADSFTPVTGLDILNLIGGKTIENQLQKL-----HRRPQVIIGTPGRLLD 134

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPRTLVLTSLGDIDISK 447
             +   L L  V   H   V +  ++ Q      V  L+  TP  R L+  S    D  +
Sbjct: 135 HCRRNSLDLSGV---HYVVVDEADQMLQSGFLSEVDELIGMTPKKRQLLFFSATIPDKVR 191

Query: 448 ITEKPAGRKPIKTVIIPINRID-EVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSV 503
              K    +P+   +     +  E IE+   ++SE +K   +C  + E        F + 
Sbjct: 192 SLAKKHMDRPLSLTVREGETVTLENIEQRIYMMSEDRKFEKLCDMLTEFNPYLAVVFCNT 251

Query: 504 VERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            +R   L     +   ++A + G MS   +  VM  F     ++L+A+ +   GID+   
Sbjct: 252 KDRTKKLASDLIARGFNVAELQGDMSQGRRNQVMRDFAKAKTQILVASDIAARGIDIEGI 311

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRG 586
           S +   +        +H++ GR GR 
Sbjct: 312 SHVFSYDVPGDTDYYIHRI-GRTGRA 336


>gi|300122867|emb|CBK23874.2| unnamed protein product [Blastocystis hominis]
          Length = 394

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 129/312 (41%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT V  I +   ++      QA+I++P   LA+Q  + +       ++   
Sbjct: 37  IAQSQSGTGKTGVFCIGVLQNIDPSLMETQALILSPTRELAEQSQKVLLSIGDCMKVQCH 96

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI--VDEQHR 405
              G    +     + R+ +G   ++ GT     D I    L      ILVI   DE   
Sbjct: 97  ACVGGKSLSD---DIRRLDYG-VQVVSGTPGRVYDMINRRHLRTRNIKILVIDEGDEMLN 152

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G +++L    +   P   V+L++AT     L +TS       K   +P        V I
Sbjct: 153 QGFKEQLYDIYRYLPPATQVVLVSATMPKEVLDMTS-------KFMNEP--------VKI 197

Query: 464 PINRIDEVIERLKVVLSEGKKAYW----ICPQIEEKKES------NFRSVVERFNSLHEH 513
            + R +  +E +K      ++  W    +C        +      N R  VE   +    
Sbjct: 198 LVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYNNLTITQAVIFCNTRRKVEWLAAKLRE 257

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++ +HG M   +++ +M+ F+ G  ++LIAT V   G+DV   S++I  +  +   
Sbjct: 258 ANFTVSSMHGDMPQKERDRIMEEFRAGNSRVLIATDVWGRGLDVQQVSLVINYDLPNSRE 317

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 318 LYIHRI-GRSGR 328


>gi|296132117|ref|YP_003639364.1| SNF2-related protein [Thermincola sp. JR]
 gi|296030695|gb|ADG81463.1| SNF2-related protein [Thermincola potens JR]
          Length = 1084

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 15/147 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           IL  D+G GKTL  +IA   + +  GQ  A+++AP   L    YE +KK+  + +  VE+
Sbjct: 645 ILADDMGLGKTL-QVIAFILSEKGAGQPPALVIAPTS-LVYNWYEEVKKFAPSLR--VEV 700

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK---LILVIVDEQHRFGVQQR 411
           +TG    A R++ L+++A  +A I++ ++ L +  I++Y+        +DE         
Sbjct: 701 VTGG--PAERQEKLKKLA--EADIVVTSYPLIRRDIEHYRQFEFAYCFLDEAQHIKNPNT 756

Query: 412 L--KLTQKATAPHVLLMTATPIPRTLV 436
           +  +  Q+  A     +T TPI  +L 
Sbjct: 757 INARSVQQINARSYFALTGTPIENSLT 783


>gi|189242416|ref|XP_001811064.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
          Length = 1142

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 147/361 (40%), Gaps = 43/361 (11%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+I+AP   LAQQ  +   ++   T +   
Sbjct: 596 TGSGKTLAYMLPAVVHINNQQRPQRGEGPVALILAPTRELAQQIQKVAHEFGSTTMVRNT 655

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR--- 405
            I G  P+  + + LER       I+I T       L + +    +   +++DE  R   
Sbjct: 656 CIFGGSPKGPQARDLER----GVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 711

Query: 406 FGVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            G + ++ K+ Q+      +LM +   P+ +       L     ++I  ++   A    I
Sbjct: 712 MGFEPQIRKIIQQIRPDRQVLMWSATWPKQVQALAEEFLVDYIQVNIGGLSL--AANHNI 769

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI----EEKKESNFRSVVERFNSLHEHF 514
           K ++      ++  +  K++   G  +   C +I    E KK+     V +    +    
Sbjct: 770 KQIVEVCEESEKEEKLCKLLKEIGSDS---CNKIIVFVETKKK-----VDDITKCIRREG 821

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            ++I+ IHG  S  +++ V+  F+ G   +L+AT V   G+DV D   +I  +  +    
Sbjct: 822 YAAIS-IHGDKSQPERDYVLSEFRTGKSSILVATDVAARGLDVEDVKYVINFDYPNSSED 880

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
            +H++ GR GR ++  +    +     + +   ++VL+           DL Q   G   
Sbjct: 881 YVHRI-GRTGRCQQAGTAYAFFTSNNQRQAKDLIAVLEEAGQNVSAELRDLAQNSRGSQN 939

Query: 635 G 635
           G
Sbjct: 940 G 940


>gi|153825090|ref|ZP_01977757.1| primosomal protein N` [Vibrio cholerae MZO-2]
 gi|149741236|gb|EDM55278.1| primosomal protein N` [Vibrio cholerae MZO-2]
          Length = 734

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    SQ+     +L+G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 199 PKLNQEQAIA-IAAVNSQQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 258 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 312 FAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 372 KYHHLQLTQRAGNALPTRN 390


>gi|124481673|gb|AAI33163.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
          Length = 709

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 98/461 (21%), Positives = 183/461 (39%), Gaps = 97/461 (21%)

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG--------- 259
           +   R  +D+    P  ERL ++   A    +      F+K   IP+   G         
Sbjct: 170 VEESRDEEDWSKPMPPNERLEHELFSASNTGI-----NFEKYDDIPVEATGTNSPGHIES 224

Query: 260 ----KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                + + I+ NI  S    PT  Q+ AI  I      K  ++   Q   GSGKT   L
Sbjct: 225 FHDVDMGEIIMGNITLSRYTRPTPVQKYAIPII----KTKRDLMACAQ--TGSGKTAAFL 278

Query: 312 IAMAAAV--EAGGQAV------------------------IMAPIGILAQQHYEFIKKYT 345
           + + + +  E  G+A+                        ++AP   LA Q Y+  +K+ 
Sbjct: 279 LPVLSQIYSEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFA 338

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
             +++   ++ G      + + LER      H+++ T     D ++  K+ L     +++
Sbjct: 339 YRSRVRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDYCKYLVL 394

Query: 401 DEQHR-----FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTS---LGDIDISKI 448
           DE  R     F  Q R  + Q    P      ++ +AT  P+ + + +   L +     +
Sbjct: 395 DEADRMLDMGFEPQIRRIVEQDTMPPKGSRQTMMFSAT-FPKEIQILARDFLEEYIFLAV 453

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
               +  + I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F 
Sbjct: 454 GRVGSTSENITQKVVWVEENDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---ALEDFL 509

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
               +  +SI   HG  S  D+E  +  F++G C +++AT V   G+D+ +   +I    
Sbjct: 510 YREGYACTSI---HGDRSQRDREEALHQFRSGRCPIMVATAVAARGLDISNVKHVI---- 562

Query: 569 EHFGLAQ-----LHQLRGRVGRGEEISSCILLYHPPLSKNS 604
            +F L       +H++ GR GR   +      Y+    KNS
Sbjct: 563 -NFDLPSDIEEYVHRI-GRTGRVGNLGLATSFYN---DKNS 598


>gi|319937469|ref|ZP_08011874.1| helicase [Coprobacillus sp. 29_1]
 gi|319807309|gb|EFW03918.1| helicase [Coprobacillus sp. 29_1]
          Length = 520

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 144/339 (42%), Gaps = 51/339 (15%)

Query: 272 SPTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVI 326
           SP+  QE +I  +L  QD+        I Q   G+GKTL     + + ++  G+   A+I
Sbjct: 26  SPSPIQEKSIPVLLEGQDI--------IGQAQTGTGKTLAFGSVLLSKIQKEGKHVKALI 77

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           ++P   LA Q +E +K+  + T + +  + G      + K L+R     A I++GT    
Sbjct: 78  LSPTRELALQIHEELKRIGKCTNLSIVSVFGGSDIERQIKDLKR----GADIVVGTPGRV 133

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLV 436
           QD ++   L        +L   DE    G  + ++   KAT  +   +L +AT +P T  
Sbjct: 134 QDLMRRRVLKINNIDFMVLDEADEMLNMGFVEDIETILKATPDNKQTVLFSAT-MPAT-- 190

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   I KI         +   I    +    + +         K   +C  ++ ++
Sbjct: 191 --------IKKIASNYMQDDYMHIQIKSKTKTASTVSQYYFETRPTNKFETLCRILDSRQ 242

Query: 497 ESNF-------RSVVERFNSLHE-HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             N        RSV E   S+ + H+   +  +HG +S   + + +  FK+G  + L+AT
Sbjct: 243 MENTIIFCKTKRSVDEVVASMQQKHY--DVEAMHGDLSQNQRTNTLKRFKSGHIQYLVAT 300

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRG 586
            V   GIDV + S +I  N E     +L+  R GR GR 
Sbjct: 301 DVAARGIDVDNISHVI--NYEMPQDEELYIHRIGRTGRA 337


>gi|299139527|ref|ZP_07032701.1| primosomal protein N' [Acidobacterium sp. MP5ACTX8]
 gi|298598455|gb|EFI54619.1| primosomal protein N' [Acidobacterium sp. MP5ACTX8]
          Length = 848

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 11/168 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
            ++Q  A+  ++  M +      +L G  GSGKT V + AM  A+ AG  A+++ P IG+
Sbjct: 300 NEAQTEALGTLVAAMEKGGFRPHLLYGITGSGKTAVYVAAMQRALAAGKSALLLVPEIGL 359

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
                 + +  +     ++   +T +     R +   RI  G+A +++GT  A+F     
Sbjct: 360 TPGIAAQMVAAFAGEVALLHSQLTPD----ERAEQWHRIRRGEARVVVGTRSAVF---AP 412

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              L L++VDE+H    +Q  + T +     V +M A  +  T+VL S
Sbjct: 413 MPDLGLILVDEEHDGSYKQ--EETPRYHGRDVAVMRAKLLGCTVVLGS 458


>gi|259145266|emb|CAY78530.1| Fal1p [Saccharomyces cerevisiae EC1118]
 gi|323309503|gb|EGA62714.1| Fal1p [Saccharomyces cerevisiae FostersO]
 gi|323334268|gb|EGA75650.1| Fal1p [Saccharomyces cerevisiae AWRI796]
          Length = 399

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 136/318 (42%), Gaps = 52/318 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I +  A++      QA+I++P   LA Q  + +K       +   
Sbjct: 64  IAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAF 123

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRFGV 408
            ITG        K +++  HG    + GT     D I     Q   + ++++DE     +
Sbjct: 124 AITGGKTLKDDLKKMQK--HG-CQAVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADEL-L 179

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            + L   Q+    + +        + +V+++  + DI ++T K     P+K ++      
Sbjct: 180 SETLGFKQQI---YDIFAKLPKNCQVVVVSATMNKDILEVTRKFMN-DPVKILV------ 229

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL------------------ 510
               +R ++ L EG K Y +     +K+E  F ++ + ++SL                  
Sbjct: 230 ----KRDEISL-EGIKQYVVNV---DKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWL 281

Query: 511 -HEHFTSSIAII--HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                 S+ A++  HG M   +++ VM+ F+ G  ++LI+T V   GIDV   S++I  +
Sbjct: 282 SQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYD 341

Query: 568 AEHFGLAQLHQLRGRVGR 585
                   +H++ GR GR
Sbjct: 342 LPEIIENYIHRI-GRSGR 358


>gi|228911292|ref|ZP_04075096.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis IBL 200]
 gi|228848310|gb|EEM93160.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis IBL 200]
          Length = 481

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 133/328 (40%), Gaps = 50/328 (15%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK---PIKT 460
             F  Q    + +  T    +L +AT +P           D+ K++           IK 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPE----------DVEKLSRTYMNSPIHIEIKA 209

Query: 461 VIIPINRID----EVIERLK------VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             I  ++I+    EV E  K      V + E   +  I  + +E  +  +R + +R N  
Sbjct: 210 AGITTDKIEHTLFEVTEEEKLSLLKDVTIIENPDSCIIFCRTQENVDHVYRQL-KRVNYP 268

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            +        IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +   
Sbjct: 269 CDK-------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPL 321

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP 598
              + +H+  GR GR       I    P
Sbjct: 322 EKESYVHRT-GRTGRAGNSGKAITFITP 348


>gi|221194702|ref|ZP_03567759.1| primosomal protein N' [Atopobium rimae ATCC 49626]
 gi|221185606|gb|EEE17996.1| primosomal protein N' [Atopobium rimae ATCC 49626]
          Length = 768

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P  +    AQK     P   T  Q  A+  I +  +  N  + ++ G  GSGKT V L A
Sbjct: 206 PTTLSSATAQK-----PAHLTDGQARALLAISKATASANGDVVLVDGVTGSGKTEVYLAA 260

Query: 314 MAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           +   +  G  A+++ P I + AQ    F  ++  +    V ++   +    R    + + 
Sbjct: 261 IEEVLAKGKGAIVLVPEISLTAQTVGRFRSRFGDD----VAVLHSRLSAGERFDQWDLVR 316

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            G AH+++G  +     ++   LI  I+DE+H    +Q
Sbjct: 317 QGSAHVVVGARSALFAPLKNPGLI--IIDEEHEASYKQ 352


>gi|168244145|ref|ZP_02669077.1| putative primosomal protein N' [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262998|ref|ZP_02684971.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|194451927|ref|YP_002048098.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194410231|gb|ACF70450.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205336927|gb|EDZ23691.1| putative primosomal protein N' [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205348164|gb|EDZ34795.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 732

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|217962948|ref|YP_002341526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|229142204|ref|ZP_04270728.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST26]
 gi|217066069|gb|ACJ80319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|228641222|gb|EEK97529.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST26]
          Length = 481

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 134/326 (41%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID-ISKITEKPAGRKPIKTVI 462
             F  Q    + +  T    +L +AT +P         D++ +S+          IK   
Sbjct: 161 MGFIDQVEAIIDELPTNRMTMLFSAT-LPE--------DVERLSRTYMNAPTHIEIKAAG 211

Query: 463 IPINRI---------DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           I  ++I         DE +  LK V + E   +  I  + +E  +  +R + +R N   +
Sbjct: 212 ITTDKIEHTLFEAIEDEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-KRANYPCD 270

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                   IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +     
Sbjct: 271 K-------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEK 323

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
            + +H+  GR GR       I    P
Sbjct: 324 ESYVHRT-GRTGRAGNSGKAITFITP 348


>gi|134301686|ref|YP_001121654.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049463|gb|ABO46534.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 569

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 47/334 (14%)

Query: 299 QGDVGSGKTLVALIAM-----AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           Q   G+GKT    + +      A+ +   Q +++AP   LA Q  E  + + +N   + V
Sbjct: 50  QAQTGTGKTAAFALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDV 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQH 404
             I G      + +AL++       +++GT     D I+           L+L   DE  
Sbjct: 110 ACIYGGQEYGSQIRALKQ----GVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEML 165

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           R G    +K  L+  +     LL +AT IP           DI+ I E+   R P K  +
Sbjct: 166 RMGFIDDVKFVLSHVSEQSQRLLFSAT-IP----------TDIADIIEEYL-RNPCKIQV 213

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--------RSVVERFNSLHEHF 514
               +    + + K ++ +G +      ++ E +E++          S +E  ++L +  
Sbjct: 214 KAKTKTANTVTQ-KFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTSTIEVADNL-KAL 271

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A I+G M    +E ++D F++    +L+AT V+  GID+   S +I  +  +    
Sbjct: 272 GYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPNDTDT 331

Query: 575 QLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTR 607
            +H++ GR GR G E +S  L+   PL +  + R
Sbjct: 332 YVHRI-GRTGRAGREGTSISLV---PLKEMRFLR 361


>gi|187608185|ref|NP_001119895.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
 gi|169154730|emb|CAQ14635.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
          Length = 709

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 98/461 (21%), Positives = 183/461 (39%), Gaps = 97/461 (21%)

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG--------- 259
           +   R  +D+    P  ERL ++   A    +      F+K   IP+   G         
Sbjct: 170 VEESRDEEDWSKPMPPNERLEHELFSASNTGI-----NFEKYDDIPVEATGTNSPGHIES 224

Query: 260 ----KIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                + + I+ NI  S    PT  Q+ AI  I      K  ++   Q   GSGKT   L
Sbjct: 225 FHDVDMGEIIMGNITLSRYTRPTPVQKYAIPII----KTKRDLMACAQ--TGSGKTAAFL 278

Query: 312 IAMAAAV--EAGGQAV------------------------IMAPIGILAQQHYEFIKKYT 345
           + + + +  E  G+A+                        ++AP   LA Q Y+  +K+ 
Sbjct: 279 LPVLSQIYSEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFA 338

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
             +++   ++ G      + + LER      H+++ T     D ++  K+ L     +++
Sbjct: 339 YRSRVRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDYCKYLVL 394

Query: 401 DEQHR-----FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTS---LGDIDISKI 448
           DE  R     F  Q R  + Q    P      ++ +AT  P+ + + +   L +     +
Sbjct: 395 DEADRMLDMGFEPQIRRIVEQDTMPPKGSRQTMMFSAT-FPKEIQILARDFLEEYIFLAV 453

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
               +  + I   ++ +   D+    L ++ + GK +  +   +E KK ++    +E F 
Sbjct: 454 GRVGSTSENITQKVVWVEENDKRSFLLDLLNATGKDSLTLV-FVETKKGAD---ALEDFL 509

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
               +  +SI   HG  S  D+E  +  F++G C +++AT V   G+D+ +   +I    
Sbjct: 510 YREGYACTSI---HGDRSQRDREEALHQFRSGRCPIMVATAVAARGLDISNVKHVI---- 562

Query: 569 EHFGLAQ-----LHQLRGRVGRGEEISSCILLYHPPLSKNS 604
            +F L       +H++ GR GR   +      Y+    KNS
Sbjct: 563 -NFDLPSDIEEYVHRI-GRTGRVGNLGLATSFYN---DKNS 598


>gi|119897299|ref|YP_932512.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119669712|emb|CAL93625.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 494

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 122/290 (42%), Gaps = 35/290 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHI 378
           +A+I+AP   LA Q YE +K Y+++  +    I G +   PQ    R+ +E        I
Sbjct: 79  RALILAPTRELAMQVYESVKTYSKHLPLRATCIYGGVDMNPQIQELRRGIE--------I 130

Query: 379 IIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIP 432
           +I T     D +Q       ++ ++++DE  R        +      P +  ++   P  
Sbjct: 131 VIATPGRLLDHVQQKTINLTQVEMLVLDEADR--------MLDMGFIPDIKRILALLPAS 182

Query: 433 R-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           R +L+ ++    +I K+ ++   + P    +   N + E I      +S G K   +   
Sbjct: 183 RQSLLFSATFSDEIKKLADQ-MLKNPQLIEVARRNMVSETITHRVHPVSSGMKRNLLAHL 241

Query: 492 IEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +  + ++      + + V  R     E  + S   IHG  S   +   +++FK G  ++L
Sbjct: 242 LRHQPDTQALVFVDTKLVCGRLAHFLERHSISADSIHGDKSQQQRTETLEAFKAGKLRVL 301

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +AT V   GID+ +   +I     H     +H++ GR GR     + + L
Sbjct: 302 VATDVAARGIDIDELPYVINYELPHTAEDYVHRI-GRTGRAGHQGNAVSL 350


>gi|62638007|gb|AAX92639.1| Vasa protein [Monopterus albus]
          Length = 450

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/377 (20%), Positives = 152/377 (40%), Gaps = 58/377 (15%)

Query: 258 EGKIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           E ++ + + RN+  S    PT  Q+  I  I    S    ++   Q   GSGKT   L+ 
Sbjct: 28  EAELCETLRRNVSKSGYVKPTPVQKHGIPII----SAGRDLMACAQ--TGSGKTASFLLP 81

Query: 314 MAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           +   +   G            +A+I+AP   L  Q Y   +K+   T +   ++ G +  
Sbjct: 82  ILQQLMVDGVAASCFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVST 141

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-----FGVQQR 411
            ++   +  I  G  +++ GT     D I   K+ L     +++DE  R     F    R
Sbjct: 142 GYQ---IREILKG-CNVLCGTPGRLLDMIGRAKVGLSKLRYLVLDEADRMLDMGFEPDMR 197

Query: 412 LKLTQKATAP---HVLLMTATPIPRTL-------VLTSLGDIDISKITEKPAGRKPIKTV 461
             +      P   H  LM +   P  +       + T    + +  +       +     
Sbjct: 198 RLVGSPGMPPKENHQTLMFSATFPEDIQRMAADFLKTDYLFLAVGVVGGACTDVEQTFVQ 257

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           +   ++ D+++E LK   +E    +     +E K++++F   +  F    +  T+SI   
Sbjct: 258 VTKFSKRDQLLEFLKTTGTERTMVF-----VETKRQADF---IALFLCQEKVPTTSI--- 306

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG     ++E  +  F++G C +L+AT+V   G+D+ D   ++  +  +     +H++ G
Sbjct: 307 HGDREQPEREKALADFRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRI-G 365

Query: 582 RVGRGEEISSCILLYHP 598
           R GR   I   +  + P
Sbjct: 366 RTGRCGNIGRAVSFFDP 382


>gi|254229424|ref|ZP_04922839.1| primosomal protein N', putative [Vibrio sp. Ex25]
 gi|262392519|ref|YP_003284373.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio sp. Ex25]
 gi|151937995|gb|EDN56838.1| primosomal protein N', putative [Vibrio sp. Ex25]
 gi|262336113|gb|ACY49908.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio sp. Ex25]
          Length = 733

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 19/159 (11%)

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQN 347
           SQ      +L+G  GSGKT V L  +   +E G QA+++ P IG+  Q     I ++   
Sbjct: 213 SQTGFACYLLEGVTGSGKTEVYLNLIKPVLEQGKQALVLVPEIGLTPQT----INRFKHR 268

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + V++I   + +  R  A        A IIIGT +       +  L ++IVDE+H   
Sbjct: 269 FNVPVDVIHSGLNETERLNAWLSARDKAAGIIIGTRSALLTP--FADLGIIIVDEEHDSS 326

Query: 408 VQQRLKL-----------TQKATAPHVLLMTATPIPRTL 435
            +Q+  L             K   P ++L +ATP   TL
Sbjct: 327 YKQQDSLRYHARDVAVMRAHKEQVP-IVLGSATPALETL 364


>gi|325579297|ref|ZP_08149253.1| ATP-dependent helicase RecQ [Haemophilus parainfluenzae ATCC 33392]
 gi|325159532|gb|EGC71666.1| ATP-dependent helicase RecQ [Haemophilus parainfluenzae ATCC 33392]
          Length = 621

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 131/321 (40%), Gaps = 51/321 (15%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK+L   I    A+   G  ++++P+  L +   + +    Q   I  + +  +   
Sbjct: 54  TGNGKSLCYQIP---ALCFPGLTLVISPLISLMKDQVDQL----QANGIEADFLNSSQTP 106

Query: 362 AHRRKALERIAHGQAHII------IGTHALFQDSIQYYKLILVIVDEQH---RFGVQQRL 412
             +++   ++  GQ  ++      + T++ FQ  I Y ++  + +DE H   ++G   R 
Sbjct: 107 EQQQQVENKLISGQLKLLYISPEKVMTNSFFQ-LISYAQISFIAIDEAHCISQWGHDFRP 165

Query: 413 KLTQ----KATAPHVLLM----TATPIPRTLVLTSLGDIDISKIT---EKPAGRKPIKTV 461
           + TQ    KA  P+  +M    TA    R  +LT L      K     ++P  R  ++  
Sbjct: 166 EYTQLGGLKAAFPNAPIMALTATADYATRQDILTHLKLDHPHKYIGSFDRPNIRYTLEEK 225

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
             P+ ++        V+  +GK     C         N RS VER   +  +   S A  
Sbjct: 226 FKPMEQLTRF-----VLAQKGKSGIVYC---------NSRSKVERIAEILRNKGVSAAAY 271

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LH 577
           H  M    +E V   F+    ++++AT    +GI+  +   +      HF L +     +
Sbjct: 272 HAGMETALRECVQQDFQRDNIQVVVATIAFGMGINKSNVRFVA-----HFDLPRSIESYY 326

Query: 578 QLRGRVGRGEEISSCILLYHP 598
           Q  GR GR +  +  +L Y P
Sbjct: 327 QETGRAGRDDLPAEAVLFYEP 347


>gi|270016294|gb|EFA12740.1| hypothetical protein TcasGA2_TC002367 [Tribolium castaneum]
          Length = 668

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 147/361 (40%), Gaps = 43/361 (11%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+I+AP   LAQQ  +   ++   T +   
Sbjct: 122 TGSGKTLAYMLPAVVHINNQQRPQRGEGPVALILAPTRELAQQIQKVAHEFGSTTMVRNT 181

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR--- 405
            I G  P+  + + LER       I+I T       L + +    +   +++DE  R   
Sbjct: 182 CIFGGSPKGPQARDLER----GVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 237

Query: 406 FGVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            G + ++ K+ Q+      +LM +   P+ +       L     ++I  ++   A    I
Sbjct: 238 MGFEPQIRKIIQQIRPDRQVLMWSATWPKQVQALAEEFLVDYIQVNIGGLSL--AANHNI 295

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI----EEKKESNFRSVVERFNSLHEHF 514
           K ++      ++  +  K++   G  +   C +I    E KK+     V +    +    
Sbjct: 296 KQIVEVCEESEKEEKLCKLLKEIGSDS---CNKIIVFVETKKK-----VDDITKCIRREG 347

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            ++I+ IHG  S  +++ V+  F+ G   +L+AT V   G+DV D   +I  +  +    
Sbjct: 348 YAAIS-IHGDKSQPERDYVLSEFRTGKSSILVATDVAARGLDVEDVKYVINFDYPNSSED 406

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
            +H++ GR GR ++  +    +     + +   ++VL+           DL Q   G   
Sbjct: 407 YVHRI-GRTGRCQQAGTAYAFFTSNNQRQAKDLIAVLEEAGQNVSAELRDLAQNSRGSQN 465

Query: 635 G 635
           G
Sbjct: 466 G 466


>gi|238878350|gb|EEQ41988.1| ATP-dependent RNA helicase ROK1 [Candida albicans WO-1]
          Length = 640

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 11/139 (7%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++ ++H   +   +E V+  FKNG   +LI T V+  G+D    +++I  +      A +
Sbjct: 466 NVDVVHAERTPKQREEVIKRFKNGDIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYV 525

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT--EDGFLIAEEDL--------K 626
           H++ GR GRG +    +  +     K     L+V+K +   DG+    ED+        K
Sbjct: 526 HRI-GRTGRGGKAGKAVTFFTKEDDKAIKPILNVMKQSGCNDGYSQWMEDMGKLSKKEKK 584

Query: 627 QRKEGEILGIKQSGMPKFL 645
           Q K  EI   K S +PK +
Sbjct: 585 QIKTHEIQRKKISTVPKVI 603


>gi|229828479|ref|ZP_04454548.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
           14600]
 gi|229793073|gb|EEP29187.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
           14600]
          Length = 538

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 147/342 (42%), Gaps = 41/342 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT----LVALIAMAAAVEAGGQAVIMA 328
           PT  QE +I  IL+       M+   Q   G+GKT    L  L  +        +A+++ 
Sbjct: 85  PTPVQEESIPVILEGRD----MIGCAQ--TGTGKTAAFALPVLHKLTLLKRPRVRALVLT 138

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA---- 384
           P   LA Q ++  KKY +   +    + G   +  +  AL R     A I++ T      
Sbjct: 139 PTRELAIQIFDNFKKYGRYLHLRTVCLYGGAKRGPQIGALRR----GADILVATPGRLLD 194

Query: 385 -LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLTSLG 441
            + QD +    + ++++DE  R        +      P V  ++ +TP  R TL+ ++  
Sbjct: 195 FMGQDLVDLSSVEILVLDEADR--------MLDMGFLPDVSRIVESTPSKRQTLMFSATM 246

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS--EGKKAYWICPQIEEKKESN 499
           + ++ ++ ++   + P++  + P N   + +E+ K++ S  E K+        +E  ES 
Sbjct: 247 EKEVRQLADRML-KDPVQVQVTPENEAADTVEQ-KLIFSSREDKREIIASLLTDEAVESA 304

Query: 500 FRSVVERFNS------LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                 +  +      L      S+AI HG  +   ++  ++ FK+G  ++++AT V   
Sbjct: 305 IVFTRTKHGADKLSRELKRRGIESVAI-HGDKTQGQRQDALNRFKSGKVRVMVATDVAAR 363

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           G+D+   S +   +      A +H++ GR GR  E    I L
Sbjct: 364 GLDIPKLSHVFNYDVPEEAGAYIHRI-GRTGRAGESGIAITL 404


>gi|168233041|ref|ZP_02658099.1| putative primosomal protein N' [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194442479|ref|YP_002043358.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194472960|ref|ZP_03078944.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194401142|gb|ACF61364.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194459324|gb|EDX48163.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205332780|gb|EDZ19544.1| putative primosomal protein N' [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 732

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|149179168|ref|ZP_01857736.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
 gi|148841986|gb|EDL56381.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
          Length = 445

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 127/289 (43%), Gaps = 37/289 (12%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LA Q  +    Y ++ ++   +I G + Q ++ KAL+R     AHI++ T 
Sbjct: 78  ALVLAPTRELAIQIGDSFDAYGRHLKLRSVLIYGGVGQGNQVKALKR----GAHILVATP 133

Query: 384 A-----LFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPR 433
                 + Q  I+  +L + ++DE  R    G    LK  +TQ  T    L  +AT  P+
Sbjct: 134 GRLLDLMNQGHIKLNQLEVFVLDEADRMLDMGFLPDLKRIITQLPTQRQSLFFSATLAPK 193

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIP-INRIDEVIERLKVVLSEGKKAYW--ICP 490
              +T L    +SK         P+   + P    ++++ ++L  V    K+     I  
Sbjct: 194 ---ITELAHSLLSK---------PVTVNVTPKTTSVEKIQQQLMFVERNFKQPLLQKILG 241

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             E ++   F       N+L +    S      IHG  S   ++  +++F+    ++L+A
Sbjct: 242 GDEVERALVFTKTKRTANTLSQRLVRSGFKATAIHGNKSQGARQQALEAFRRKQVQVLVA 301

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           T V   GID+   + +I  +      A +H++ GR GR    G  IS C
Sbjct: 302 TDVAARGIDIDGITHVINFDLPVEPEAYVHRI-GRTGRAGANGIAISFC 349


>gi|78776342|ref|YP_392657.1| ATP-dependent RNA helicase DbpA [Sulfurimonas denitrificans DSM
           1251]
 gi|78496882|gb|ABB43422.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 457

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 135/334 (40%), Gaps = 66/334 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQ---HYEFIKKYTQNTQI 350
           I Q   GSGKT    I +   ++      QA+I+ P   L+ Q       + +++ N +I
Sbjct: 46  IAQAKTGSGKTAAFGIGLLHKLQVKKFRVQALILCPTRELSDQVARELRVLARFSHNIKI 105

Query: 351 IVEIITGNM---PQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDE 402
           +   + G +   PQ      L  + HG AHII+GT       L +D++    +  +++DE
Sbjct: 106 LT--LCGGVAFGPQ------LGSLRHG-AHIIVGTPGRILKHLKKDTLSLEDVDTLVLDE 156

Query: 403 QHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
             R         + + L+   K      LL +AT     L        DISK  +   G 
Sbjct: 157 ADRMLDMGFSEEINEVLEFVPKNR--QTLLFSATYTDEIL--------DISKSIQN--GA 204

Query: 456 KPIKTVIIPI-NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR------------S 502
             +KT    I N+I+E    +    +   K   +   +     SNFR             
Sbjct: 205 IHVKTTSTEIANKIEERFYEV----NNADKIKTVIDIL-----SNFRPQNVIIFANTKVE 255

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           V E    L E    ++AI HG +   D+  V+  F N +C +L+AT V   G+D+ + S+
Sbjct: 256 VDEIAKRLQESKVDALAI-HGDLEQYDRNDVLVQFANKSCPVLVATDVAARGLDIKELSM 314

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +I  +  H      H++ GR  R         LY
Sbjct: 315 VINYDLPHSLETYTHRI-GRTARAGAEGLAFTLY 347


>gi|75773731|gb|AAI04622.1| DDX50 protein [Bos taurus]
          Length = 446

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +  ++I  + 
Sbjct: 115 AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSP 174

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                + +H+  GR GR      CI  Y P
Sbjct: 175 PQDVESYIHR-SGRTGRAGRTGICICFYQP 203


>gi|117927011|ref|YP_867628.1| replication restart DNA helicase PriA [Magnetococcus sp. MC-1]
 gi|117610767|gb|ABK46222.1| replication restart DNA helicase PriA [Magnetococcus sp. MC-1]
          Length = 738

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 7/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            + Q+ A+  ++  +  ++    +L G  GSGKT V    +   +  G QA+++ P   L
Sbjct: 202 NEQQQQAVGQLVAALEAQHFAAFLLDGVTGSGKTEVYFRGVEHCLAQGRQALLLVPEIAL 261

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
             Q    I++Y       + +    M  A R +  +R   G A ++IG   ALF     +
Sbjct: 262 TPQ---LIQRYEARFHENLAVFHSEMSAARRYRDWQRAKSGAARVVIGARSALFAP---F 315

Query: 393 YKLILVIVDEQHRFGVQQ 410
            KL L++VDE+H    +Q
Sbjct: 316 AKLGLIVVDEEHEGSYKQ 333


>gi|308172603|ref|YP_003919308.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|307605467|emb|CBI41838.1| putative ATP-dependent RNA helicase [Bacillus amyloliquefaciens DSM
           7]
          Length = 376

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 155/362 (42%), Gaps = 78/362 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           PT  QE A + I++          I +   G+GKTL   + +   +   +   Q +I+AP
Sbjct: 27  PTVIQEKAAQVIMEGKDV------IAESPTGTGKTLAYTLPVLERINPEQKHPQVIILAP 80

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q ++ I+ + + + +    + G    A+ +K +E++ + + HII GT     + 
Sbjct: 81  SRELVMQIFQVIQDWKKGSDLRALSLIGG---ANVKKQVEKLKN-KPHIIAGTPGRVLEL 136

Query: 390 IQYYKLIL-----VIVDE-------QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           IQ  KL +     +++DE       +HR  +++ +K T +     +L  +AT  P T  +
Sbjct: 137 IQAKKLKMHEVKTIVLDEADQLVTKEHRETMKKIIKTTLRDR--QLLSFSATLQPETEEV 194

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                  +++I  +PA        ++ + R  E  E+ +V        Y +C Q ++ K 
Sbjct: 195 -------LNEIAHEPA--------VLKVKRNTE--EKARVT-----HQYLVCDQRDKVK- 231

Query: 498 SNFRSVVERFNSLHE------------------HFTSSIAIIHGRMSDIDKESVMDSFKN 539
                 + R N +                    +    + I+HG    +++ +++ +F+ 
Sbjct: 232 --LLQKLSRLNGMQALVFVRDIGNLSVYAEKLAYHHVDLGILHGEAKKMERANILSAFER 289

Query: 540 GTCKLLIATTVIEVGIDVVDASIII---IENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           G   LL+AT +   G+D+ D   +I   I N + +    +H+  GR GR  +  + + L 
Sbjct: 290 GEFPLLLATDIAARGLDIDDLPYVIHADIPNEDGY----IHR-SGRTGRAGKEGTVLSLV 344

Query: 597 HP 598
            P
Sbjct: 345 TP 346


>gi|269964737|ref|ZP_06178975.1| Primosomal protein N' [Vibrio alginolyticus 40B]
 gi|269830636|gb|EEZ84857.1| Primosomal protein N' [Vibrio alginolyticus 40B]
          Length = 734

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 19/159 (11%)

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQN 347
           SQ      +L+G  GSGKT V L  +   +E G QA+++ P IG+  Q     I ++ + 
Sbjct: 214 SQTGFACYLLEGVTGSGKTEVYLNLIKPVLEQGKQALVLVPEIGLTPQT----INRFKRR 269

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + V++I   + +  R  A        A IIIGT +       +  L ++IVDE+H   
Sbjct: 270 FNVPVDVIHSGLNETERLNAWLSARDKAAGIIIGTRSALLAP--FADLGIIIVDEEHDTS 327

Query: 408 VQQRLKL-----------TQKATAPHVLLMTATPIPRTL 435
            +Q+  L             K   P ++L +ATP   TL
Sbjct: 328 YKQQDSLRYHARDVAVMRAHKEQVP-IVLGSATPALETL 365


>gi|227550039|ref|ZP_03980088.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227077885|gb|EEI15848.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 430

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 68/358 (18%), Positives = 144/358 (40%), Gaps = 52/358 (14%)

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           A  A ++   +A+I+ P   LA Q  E + +  + T + +  + G  P     +A   + 
Sbjct: 79  ADVAELDGTPRALIIVPTRELAVQVGEDLSRAAKYTPVRITTVYGGRPY----EAQIAVL 134

Query: 373 HGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR------FGVQQRLKLTQKATAP 421
                +++GT       L + ++Q  ++ ++++DE         F   Q+L         
Sbjct: 135 SSGVDVVVGTPGRLIDLLNRGNLQLDRVAVLVLDEADEMLDLGFFPDIQKLWAALPQPVQ 194

Query: 422 HVLLMTATPIPRTLVLTSLGDIDI---SKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            +L     P P   +  SL +  +   ++    P+     + V+   +R+D++    +++
Sbjct: 195 AMLFSATMPGPILTLARSLMNRPVHIRAEAANTPSTHSTTRQVVFRSHRMDKLEVTARIL 254

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVER-FNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            + G+    +  +++       R + ER F+         +  +HG +    +E  +++F
Sbjct: 255 QARGRGRTIVFTRMKRTAAEVARDLAERGFD---------VGSVHGDLGQGAREQALEAF 305

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G   +L+AT V   GIDV D + +I        +  +H++ GR GR  +    + L  
Sbjct: 306 RSGEVSILVATDVAARGIDVDDVTHVINFQTPDDPMTYVHRI-GRTGRAGQTGIAVTLV- 363

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
                              GF   +E  K       LG++    P +    PEL+++L
Sbjct: 364 -------------------GF---DEGQKWTAINAELGLEMPDPPAWFSTSPELYEAL 399


>gi|225684976|gb|EEH23260.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb03]
 gi|226294288|gb|EEH49708.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 399

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 147/354 (41%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVLRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + + ++ HGQ H++ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVG---EDIRKLDHGQ-HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT +P      
Sbjct: 157 MIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT-LP------ 209

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E 
Sbjct: 210 ----YDVLDMTTKFMT-DPVRILV----------KRDELTL-EGLKQYFIAV---EKEEW 250

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 251 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 308

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 309 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 357


>gi|255553305|ref|XP_002517695.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223543327|gb|EEF44859.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 585

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 132/319 (41%), Gaps = 55/319 (17%)

Query: 302 VGSGKTLVAL-----------IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-- 348
            GSGKTL  +           I M  A   G   +I+ P   LA+Q YE ++++   T  
Sbjct: 185 TGSGKTLAFVLPMITIAFQEEIMMPIAPREGPFGLIICPSRELARQTYEVVEQFLIPTRR 244

Query: 349 ----QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VI 399
               ++   +  G +     R  LE +  G  HI++ T    +D +   K+ L     + 
Sbjct: 245 AGYPELRALLCVGGV---DMRSQLEVVKKG-VHIVVATPGRLKDMLAKKKMNLDNCRYLT 300

Query: 400 VDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           +DE  R    G +  ++   +        LL +AT      + T + +   S +      
Sbjct: 301 LDEADRLVDLGFEDDIREIFSYFKAQRQTLLFSAT------MPTKVQNFAKSAL------ 348

Query: 455 RKPIKTVIIPINRID----EVIERLKVVLSEGKKAYWI-CPQIEEKKESNFRSVVERFNS 509
              +K VI+ ++R      +VI+ ++ V  E K AY + C +    +   F       + 
Sbjct: 349 ---VKPVIVNVSRAGAANLDVIQEIEYVKQEDKTAYLLKCLEKTPPQVLIFCESKADVDK 405

Query: 510 LHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           +HE+       +  IHG     ++E  + SFK+G   +LIAT V+  G+D  D   +I  
Sbjct: 406 IHEYLLLKGVEVVAIHGGKDQEEREYAISSFKSGKKDVLIATDVVSKGLDFPDIQHVINY 465

Query: 567 NAEHFGLAQLHQLRGRVGR 585
           +        +H++ GR GR
Sbjct: 466 DMPAEIENYVHRI-GRTGR 483


>gi|119872530|ref|YP_930537.1| DEAD/DEAH box helicase domain-containing protein [Pyrobaculum
           islandicum DSM 4184]
 gi|119673938|gb|ABL88194.1| DEAD/DEAH box helicase domain protein [Pyrobaculum islandicum DSM
           4184]
          Length = 744

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 147/360 (40%), Gaps = 60/360 (16%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAVEAGGQAVIMAPIG 331
           + Q  AI+ I     + NR   I+ G  G GKT   L  L   +     G  A+++ P  
Sbjct: 54  RYQYDAIQSI-----RSNRDTVIVAG-TGMGKTEAFLAPLFETSLESLGGPVALVLYPTK 107

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
            LA+  +   +K+     + V +  G+ PQ  RR   E       HIII    +   ++ 
Sbjct: 108 ALARDQFARFRKFADKLGVRVMVYDGDTPQRERRILYEM----PPHIIISNPDMVSLALM 163

Query: 392 YY--------KLILVIVDEQHRFG------VQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           +         +L  V++D+ H +       +   L+  ++ T P  +  +AT        
Sbjct: 164 HVAKFRELVKRLKYVVLDDFHVYSGVFGSHMYYLLRRLKRFTRPVFIATSATVGNPAEFA 223

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEK 495
            +L D +   +   P GR+          R+ +V+ R   +   +E  +   +C      
Sbjct: 224 QALFDSNKINVVWGPLGRR---------GRLIQVLVRPKFRSKWAEAARLSSLC------ 268

Query: 496 KESNFRSVVERFNSLHEH------------FTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            E+  + +V  F   H +            +   +A+    +   ++++V ++FK G   
Sbjct: 269 IENGLKCIV--FTDSHRYSEIIYRALKMGGYGDKVAVHRAGLEPEERKNVEEAFKRGDVN 326

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPLSK 602
           ++I+T  +E+GID+ D    I+ +        L ++ GRVGR  +    + +L + P+S+
Sbjct: 327 VVISTPTLELGIDIGDIDAAILASIPPSYNRYLQRI-GRVGRRGQTGYVVQILGNDPISQ 385


>gi|70727140|ref|YP_254056.1| hypothetical protein SH2141 [Staphylococcus haemolyticus JCSC1435]
 gi|68447866|dbj|BAE05450.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 300

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 34/235 (14%)

Query: 376 AHIIIGT-HALFQDSIQYYKLILVIVDEQHRFGVQ------QRLKLTQKATAPHVLLMTA 428
            H I+ T H LF+    +    ++ +DE   F +       + ++L+ K    H+  MTA
Sbjct: 55  GHFIVATVHQLFRFKSHFD---VIFIDEVDAFPLSMDPRLMEAIRLSSKQKHSHIF-MTA 110

Query: 429 TPIPRTLVLTSLGDIDISKITEKPA--GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TP P+ L    L  +   +I   PA   + P+     P+        +L V   + K   
Sbjct: 111 TP-PKEL----LNRLSSEQIITLPARFHKHPL-----PVPNFTYF--KLNVKHIQLKLKR 158

Query: 487 WICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            +  QI EK+ +     N   +VE +     HF+    +I+    D  + S + + +NG 
Sbjct: 159 ILMNQINEKRYTLVFFNNIELMVETYQHYRYHFSD---LIYVSSKDALRFSKVQALRNGE 215

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             ++  TT++E G  +    +I+I NA  F  A L Q+ GRVGR +E  +  +++
Sbjct: 216 HAIVFTTTILERGFTMAQLDVIVI-NAHTFEKAALIQIAGRVGRKQEAPTGKVIF 269


>gi|89100613|ref|ZP_01173471.1| late competence protein [Bacillus sp. NRRL B-14911]
 gi|89084637|gb|EAR63780.1| late competence protein [Bacillus sp. NRRL B-14911]
          Length = 382

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 140/344 (40%), Gaps = 50/344 (14%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           +  Q++A     Q + Q   +L  +    G+GKT V    +  A++AG +  +  P   +
Sbjct: 35  SNGQQTASNRTAQAIQQNKELL--VWAVCGAGKTEVLFAGIDLALQAGKRVCLATPRTDV 92

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             +    +KK     +I V  + G     H    L          I  TH LF+    Y 
Sbjct: 93  VLELTPRLKKVF--PEITVASLYGGSEDRHLFAPL---------TIATTHQLFRF---YQ 138

Query: 394 KLILVIVDEQHRF--GVQQRLKLT-QKATAPH--VLLMTATPIPRTLVLTSLGDIDISKI 448
               +I+DE   F   + + L+   Q+A  P   ++ +TATP  +     S G  D   I
Sbjct: 139 AFDTIILDEVDAFPYSIDKTLQYAVQQARKPESSMIYLTATPNQKWQRDCSFGKRDHVTI 198

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA----YWICPQIEEKKE------- 497
             +   R P+    +P  R     E+L   L + K       WI  +I+  K+       
Sbjct: 199 PAR-YHRHPLP---VPEYRWCGNWEKL---LKKSKLPNPLISWINQRIQTSKQILLFFPR 251

Query: 498 -SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                + +     LH+   S    +H    D D++S +   +N   ++L+ TT++E G+ 
Sbjct: 252 IDIMEAALPLIQKLHQQTDS----VHA--EDPDRKSKVQKMRNKETQILLTTTILERGVT 305

Query: 557 VVDASIIIIENAEH--FGLAQLHQLRGRVGRGEEI-SSCILLYH 597
             +  + +I  AEH  F  + L Q+ GRVGR  +  S  I  +H
Sbjct: 306 FPNIDVAVI-GAEHHVFTESALVQISGRVGRSADYPSGTITFFH 348


>gi|331018940|gb|EGH98996.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 442

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 120/285 (42%), Gaps = 25/285 (8%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHI 378
           +A+++AP   LA Q +E I++Y +N  +      G +   PQ  + RK ++ +      +
Sbjct: 76  RALVLAPTRELADQVHESIRQYAENLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPGRL 135

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP---HVLLMTATPIP 432
           +       Q +I++ +L  +I+DE  R    G  + L+    A  P     LL +AT   
Sbjct: 136 L---DLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIY-AVLPKQRQTLLFSATFSD 191

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             R L    L D    +++ +      +K  ++ +++      +  + +   KK  W   
Sbjct: 192 EIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKK----RKADLFIHLMKKHRWGQV 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +  K       +V+R   L  +       IHG      ++  +D FK+   K+L+AT V
Sbjct: 248 LVFAKTRVGVDQLVDRLQGLGLNADG----IHGDKPQATRQRALDRFKSNEVKILVATDV 303

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
              G+D+ D   ++  +        +H++ GR GR  +    I L
Sbjct: 304 AARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGQTGEAISL 347


>gi|307546355|ref|YP_003898834.1| primosomal protein N' [Halomonas elongata DSM 2581]
 gi|307218379|emb|CBV43649.1| K04066 primosomal protein N' (replication factor Y) (superfamily II
           helicase) [Halomonas elongata DSM 2581]
          Length = 745

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 26/207 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  + A V    QA+++ P IG+  Q    F K++    Q+ V  +
Sbjct: 232 LLHGVTGSGKTEVYLQLIEAVVGRQRQALVLVPEIGLTPQTLERFRKRF----QVPVVAL 287

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH--RFGVQQRL 412
              +    R  A E  A+G+A I+IGT  A+F       +   +IVDE+H   F  Q+ L
Sbjct: 288 HSGLTDHERLDAWEAAANGRAPIVIGTRSAIF---TPLARPGAIIVDEEHDGSFKQQEGL 344

Query: 413 KLTQKATA---PH-----VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           +   +  A    H     ++L +ATP   +L     GD    ++T + +   P +  ++ 
Sbjct: 345 RYHARDLAVIRAHRHGIPIVLGSATPSLESLHRARAGDYRHLRLTRRASRHAPARLELVD 404

Query: 465 INR-------IDEVIERLKVVLSEGKK 484
           +         I  V++ +K  L+ G +
Sbjct: 405 LRGRPRKGGLIAPVLDAIKTTLNAGHQ 431


>gi|269302711|gb|ACZ32811.1| primosomal protein N' [Chlamydophila pneumoniae LPCoLN]
          Length = 749

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 21/218 (9%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q+SAI  I   +        +L G  GSGKT + L A + A++ G   +++ P I +  Q
Sbjct: 214 QQSAIDKIFSSLKTSQFHTHLLFGITGSGKTEIYLRATSEALKQGKSTILLVPEIALTVQ 273

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               F  ++ ++    V ++   +  + + +   + + G   I+IG   ALF        
Sbjct: 274 TVSLFKARFGKD----VGVLHHKLSDSDKSRTWRQASEGSLRILIGPRSALF---CPMKN 326

Query: 395 LILVIVDEQHRFGVQQ---------RLKLTQKATAPH--VLLMTATPIPRTLVLTSLGDI 443
           L L+IVDE+H    +Q         R     +    H  V+L +ATP   +      G  
Sbjct: 327 LGLIIVDEEHDPAYKQTESPPCYHARDVAVMRGKLAHATVVLGSATPSLESYTNALSGKY 386

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +S+++ + A   P K  +I +N ++    + K++ S+
Sbjct: 387 VLSRLSSRAAAAHPAKISLINMN-LEREKSKTKILFSQ 423


>gi|260460697|ref|ZP_05808947.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259033274|gb|EEW34535.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 525

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 132/312 (42%), Gaps = 47/312 (15%)

Query: 302 VGSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            G+GKT   ++ M   +E G       + +I+ P   LA Q  E   KY +N ++ + ++
Sbjct: 47  TGTGKTASFVLPMLTRLEKGRARARMPRTLILEPTRELAAQVEENFIKYGKNHKLNIALL 106

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---- 406
            G +    + K LER     A ++I T     D  +  KL+L     +++DE  R     
Sbjct: 107 IGGVSFDEQDKKLER----GADVLIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMG 162

Query: 407 ------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLT-----SLGDIDISKITEKPAG- 454
                  + + +  T++      L  +AT  P    LT     +   +++SK        
Sbjct: 163 FIPDIERICEMIPFTRQ-----TLFFSATMPPEITKLTEKFLHAPVRVEVSKAASAATNI 217

Query: 455 -RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            ++ +K+   P ++ + +   +K   +E K A   C +  E        V E F SL + 
Sbjct: 218 IQRLVKSGSKPWDKRETLRNLIKAEDAELKNAIIFCNRKVE--------VSELFRSLLK- 268

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           +      +HG M    +  ++ +F++G  + L+A+ V   G+D+ D S +   +      
Sbjct: 269 YDFDAGALHGDMDQRARMQMLANFRDGKLRYLVASDVAARGLDIPDVSHVFNYDVPIHAE 328

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 329 DYVHRI-GRTGR 339


>gi|15605511|ref|NP_220297.1| primosome assembly protein PriA [Chlamydia trachomatis D/UW-3/CX]
 gi|8928258|sp|O84783|PRIA_CHLTR RecName: Full=Primosomal protein N'; AltName: Full=ATP-dependent
           helicase priA; AltName: Full=Replication factor Y
 gi|3329242|gb|AAC68373.1| Primosomal Protein N' [Chlamydia trachomatis D/UW-3/CX]
          Length = 753

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 89/211 (42%), Gaps = 18/211 (8%)

Query: 269 IPFSPTKSQE--SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           +P  PT +QE   A+  I Q +  +     +L G  GSGKT V L  +  A   G   ++
Sbjct: 208 LPDPPTLNQEQLDAVNTISQSLVAEQFQTCLLFGVTGSGKTEVYLQVIRKARALGKSVIL 267

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   L  Q   F K +  +    V ++   +  + R +   + + G  +IIIG  +  
Sbjct: 268 LVPEVALTIQTLSFFKMHFGSE---VGVLHYKLSDSERTQTWYKASRGLINIIIGPRSAI 324

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATPIPRTL 435
              IQ   L L+IVDE+H    +Q              +  K T   V+L +ATP   + 
Sbjct: 325 FCPIQ--NLGLIIVDEEHDSAYKQSDLPPFYQARDVAVMRGKMTNATVILGSATPSLESY 382

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                    +S ++++ +   P K  +I +N
Sbjct: 383 TNALSKKYTLSVLSKRASTSTPTKVFLIDMN 413


>gi|325479664|gb|EGC82756.1| ATP-dependent DNA helicase RecQ [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 591

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 125/313 (39%), Gaps = 39/313 (12%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G GK++   +    A+   G +++++P+  L +   + +++      I    I  ++  
Sbjct: 42  TGGGKSICYQLP---ALMTDGVSLVISPLISLMKDQVDSLRE----NGINAGFINSSLDS 94

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
              RK L  +  GQ  I+  +     +  F++ I+   +  V VDE H            
Sbjct: 95  EEYRKILSDVKTGQIKILYISPERLENEFFRNFIRDIDICFVAVDEAHCI---------- 144

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDI--------SKITEKPAGRKPIKTVIIPINRI 468
            +   H    +   IP    +  LGD+ I         ++ E       +    I +   
Sbjct: 145 -SQWGHDFRPSYKLIPDLYQI--LGDVQILAFTATATKEVREDIINNLQLSNPFIKVTGF 201

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESN--FRSVVERFNSLHEHFTS---SIAIIHG 523
           D      KV   + K  Y      + + ES   + S  ++ + ++++  S   +I   H 
Sbjct: 202 DRKNLYFKVAKPKNKLTYLNSYLKDHRDESGIIYASTRKKVDDIYKNLKSRGYAIEKYHA 261

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +S+ +++   D+F     K+++AT    +GID  +   +I  N     +   +Q  GR 
Sbjct: 262 GLSEDERKKAQDNFIYDRAKIIVATNAFGMGIDKSNVRFVIHYNMPK-DMESYYQEAGRA 320

Query: 584 GRGEEISSCILLY 596
           GR  E ++CILLY
Sbjct: 321 GRDGEDATCILLY 333


>gi|156061783|ref|XP_001596814.1| hypothetical protein SS1G_03037 [Sclerotinia sclerotiorum 1980]
 gi|154700438|gb|EDO00177.1| hypothetical protein SS1G_03037 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 688

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 131/303 (43%), Gaps = 55/303 (18%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I++P   LA+Q      K T+NT +IV++  G    + +R+ L ++     HI++GT
Sbjct: 165 RAIIISPTRELAEQIAVEAVKITRNTDLIVQVAVGG---SSKREMLRKVQREGCHILVGT 221

Query: 383 HALFQD-------SIQYYKLILVIVDEQHRF---GVQQRLK------LTQKATAPHVLLM 426
               QD        +    L  +++DE  R    G  + ++        +K      LL 
Sbjct: 222 PGRLQDLLMDEYSQVSAPGLTTLVLDEADRLLDDGFSKDIENIEALLPNRKEVDRQTLLF 281

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEG 482
           +AT +PR +       + + K T KP G + ++TV    +    RI + I     + +  
Sbjct: 282 SAT-VPREV-------MRLVKRTLKP-GYQFVQTVKEGDVATHERIPQKIAATVGLENTI 332

Query: 483 KKAYWICPQIEEKKE----SNFRSVV---------------ERFNSLHEHFTSSIAIIHG 523
                +C +  EK      S F+++V               +  +SLH   TS+   IHG
Sbjct: 333 PALVELCKKGIEKANTEGTSPFKAIVYFNSTASVQLAGEIFKGIDSLHSVETSA---IHG 389

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           ++S   +  V D F+     ++ ++ V   G+D  + + +I  +        +H++ GR 
Sbjct: 390 KLSQERRTRVTDRFRRAQSAIMFSSDVTARGMDFPNVTHVIQVSVPRDRDTYIHRV-GRT 448

Query: 584 GRG 586
           GRG
Sbjct: 449 GRG 451


>gi|20094271|ref|NP_614118.1| helicase [Methanopyrus kandleri AV19]
 gi|19887311|gb|AAM02048.1| Archaea-specific Superfamily II helicase [Methanopyrus kandleri
           AV19]
          Length = 818

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 132/323 (40%), Gaps = 64/323 (19%)

Query: 302 VGSGKTLVA-LIAMAAAVEAGGQAVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNM 359
            GSGKTLVA L  +   +  G + V + P+  LA Q+H EF++KY +   I V +  G  
Sbjct: 235 TGSGKTLVAELAGLTEVLREGRKMVYLVPLVALANQKHREFMEKYGRPLGIGVRLQVG-- 292

Query: 360 PQAHRRKALERIAHG----QAHIIIGTHALFQ-----DSIQYYKLILVIVDEQHRFGVQQ 410
             A R K       G     A II+GT+  F       ++    + +V++DE H    ++
Sbjct: 293 --AARLKEFSGPERGPSPRDADIIVGTYEGFDLLLRTGAVDPDDIGVVVIDEVHTLADER 350

Query: 411 RLKLT------QKATAPHVLLMTAT-PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             +L       +  T   +L ++AT   P  L       +D   I      R+P     +
Sbjct: 351 GPRLDGLVCRLKTLTGAQLLGLSATVGNPEELAEY----LDAEPIVHN---RRP-----V 398

Query: 464 PINRIDEVIERLKVVLSEGKKAYW--ICPQIEEKKESNFRS---------VVERFNS--- 509
           P+           +V+++ ++  W  I   +E + E+ + +            R N+   
Sbjct: 399 PLE--------YHLVINQDRRQKWDRIARLVESEWETEYSTGYRGQTIVFTYSRRNTHRL 450

Query: 510 ---LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              L+E     +A  H  +    + S+  +F+ G    ++ T  +  G+D   AS +I E
Sbjct: 451 ADLLNERTGLDVAPYHAGLPYDRRRSIERAFERGELAAVVTTAALGAGVD-FPASQVIFE 509

Query: 567 NA----EHFGLAQLHQLRGRVGR 585
           +     E     +  Q+ GR GR
Sbjct: 510 SLAMGIEWLTPREFQQMAGRAGR 532


>gi|68061551|ref|XP_672775.1| RNA helicase [Plasmodium berghei strain ANKA]
 gi|56490118|emb|CAI02126.1| RNA helicase , putative [Plasmodium berghei]
          Length = 434

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 119/289 (41%), Gaps = 30/289 (10%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   L  Q    IK +     +    + G +P+  +   +  I  G A II+ T 
Sbjct: 126 GLILLPTRELCMQVLNEIKNFESELNLKAVAVYGGVPKYFQ---INNIKKG-ADIIVATP 181

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTAT-PIP 432
               D      I   + I V++DE  R    G +++L+  +TQ      +L +TAT P  
Sbjct: 182 GRLLDYLENGIINLLRCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPEQ 241

Query: 433 RTLVLTSLGDIDISKI----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYW 487
              +       D  KI    +E  A +   + VI+  +   +      +  + E  K   
Sbjct: 242 VRKLAYDFCSFDPVKIQIGKSELTANKNIEQQVIVSSSIDLKKKLLDWLKDNYENNKILI 301

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C           R+       L  H  +S++I HG     +++ +++++KN  C +L+A
Sbjct: 302 FC--------DTKRNCDNLCKELRYHQYNSLSI-HGDKQQRERDRILNNYKNDRCNILVA 352

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           T V   G+D+ + SI+I  +  +     +H++ GR GR       IL +
Sbjct: 353 TDVASRGLDIKNISIVINYDIPNTIEDYIHRI-GRTGRAGNKGQSILFF 400


>gi|115444197|ref|NP_001045878.1| Os02g0146600 [Oryza sativa Japonica Group]
 gi|75325389|sp|Q6Z2Z4|IF4A3_ORYSJ RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 23;
           AltName: Full=eIF4A-2
 gi|45736055|dbj|BAD13081.1| putative translational initiation factor eIF-4A [Oryza sativa
           Japonica Group]
 gi|113535409|dbj|BAF07792.1| Os02g0146600 [Oryza sativa Japonica Group]
 gi|125538069|gb|EAY84464.1| hypothetical protein OsI_05839 [Oryza sativa Indica Group]
 gi|215707096|dbj|BAG93556.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222622164|gb|EEE56296.1| hypothetical protein OsJ_05367 [Oryza sativa Japonica Group]
          Length = 414

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 123/312 (39%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    Q++++AP   LAQQ  + ++       + V 
Sbjct: 82  IQQAQSGTGKTATFCSGILQQLDYGLVECQSLVLAPTRELAQQIEKVMRALGDYLGVKVH 141

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++   L        +L   DE   
Sbjct: 142 ACVGGTSV----REDQRILASGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLS 197

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V + +AT  P  L +T        K   KP        V I
Sbjct: 198 RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMNKP--------VRI 242

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K      +K  W    + +  E+          N R  V+        
Sbjct: 243 LVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 302

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 303 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 362

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 363 NYLHRI-GRSGR 373


>gi|323964518|gb|EGB59993.1| DEAD/DEAH box helicase [Escherichia coli M863]
          Length = 398

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 127/326 (38%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQKIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q        L ++++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNMLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAITAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                  K  I  + R+        + L +       C       + + ++V +  N + 
Sbjct: 219 QFYETSSKGKIPLLQRL--------LSLHQPSSCVVFC-----NTKKDCQAVCDALNDIG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S    +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 QSALS----LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELVVNFELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|298735933|ref|YP_003728458.1| primosomal protein N' [Helicobacter pylori B8]
 gi|298355122|emb|CBI65994.1| primosomal protein N' (replication factor Y) (superfamily II
           helicase) [Helicobacter pylori B8]
          Length = 619

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + A+A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHPA-SLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      + + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKRVFKEN----LGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 219 LKELGLIIVDEEHDFS 234


>gi|291236621|ref|XP_002738237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like
           [Saccoglossus kowalevskii]
          Length = 700

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 136/336 (40%), Gaps = 54/336 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE-----AG--GQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           I Q   G+GKTL   + +   ++     AG   Q ++MAP   LA+Q  E  +    N +
Sbjct: 159 IAQARTGTGKTLAFALPLVEKLKNTEFKAGRPPQVLVMAPTRELAKQVSEDFQ--ASNPR 216

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +    + G      +  A+ R       +++GT     D +Q   L L     VI+DE  
Sbjct: 217 LSTLCVYGGTAYWPQESAIRR----GVDVLVGTPGRILDYVQKNTLNLSQLKHVILDEVD 272

Query: 405 RF-------GVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           R         V++ L    K+      P  LL +AT +P  +  T+   +          
Sbjct: 273 RMLDMGFADTVEEILSASYKMDNPGENPQTLLFSAT-LPEWVYRTAKKYMKSEIKRVDLI 331

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP--QIEEKKESNFRSVVERFNSLH 511
           G++ +KT           +E L +     ++A  I    Q+   K        E     +
Sbjct: 332 GQQKLKTAT--------TVEHLAIRCHYRQRAATISDVVQVYSGKHGRCMIFTETKKDAN 383

Query: 512 EHFTSS-----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII- 565
           E   SS     + ++HG ++   +E  +  F++G  + L+AT V   G+D+ +  +I++ 
Sbjct: 384 EMGLSSSIRQDVQVLHGDIAQNQREITLKGFRDGKFRCLVATDVAARGLDIPEVDLIVMC 443

Query: 566 ---ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              ++AE++    +H+  GR GR       +  Y P
Sbjct: 444 EPPKDAENY----IHR-SGRTGRAGRTGVSVCFYKP 474


>gi|229061471|ref|ZP_04198816.1| Primosomal protein N' [Bacillus cereus AH603]
 gi|228717894|gb|EEL69542.1| Primosomal protein N' [Bacillus cereus AH603]
          Length = 771

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 232 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 291

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++     ++   ++        RK L +    +  +++G   A+F 
Sbjct: 292 EIALTPQMVDRFKGRFGSQVAVLHSALSVGEKYDEWRKILRK----EVKVVVGARSAIFA 347

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 348 P---FENLGIIIIDEEHESSYKQ 367


>gi|221640075|ref|YP_002526337.1| DNA helicase [Rhodobacter sphaeroides KD131]
 gi|221160856|gb|ACM01836.1| DNA helicase [Rhodobacter sphaeroides KD131]
          Length = 1695

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 156/366 (42%), Gaps = 74/366 (20%)

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALI-AMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           + + M+ +N +L IL    G+GK++   + A++   + G   V+++P+  L     + ++
Sbjct: 294 VAEAMAHQN-VLGILP--TGTGKSVCYQVPALSLFDKTGALTVVISPLVALMADQVQGME 350

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII-IGTHALFQDSIQYY----KLIL 397
           +   ++ +    I G +    R+ AL+R+  G+A I+ I    L   S++      ++ L
Sbjct: 351 RAGISSAVT---INGMLSMPERQDALDRVRLGKAAILLISPEQLRSVSVRTVLAQREVGL 407

Query: 398 VIVDEQH---RFGVQQR----------LKLTQKATAPHVLLMTATPIP----------RT 434
            ++DE H   ++G   R           + +  AT   VL +TAT  P          R 
Sbjct: 408 WVLDEAHCVSKWGHDFRPDYRYIGRFIREFSGDATPAPVLCLTATAKPEVVRDITEHFRE 467

Query: 435 LVLTSLGDIDISKI----------TEKPAGRKPIKTVI---IPINRIDEVIERLKVVLSE 481
            +   LG  D              T K +    I T I   +P +      ER   V+  
Sbjct: 468 RLGVELGLFDGGATRTNLTFSVLATTKESKLGDIMTTISGHLPAD------ERSGAVI-- 519

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                +   + E ++ + F   ++R     EHF       H  ++  DK++V + F+ G 
Sbjct: 520 -----YCATRAETERIAEF---LKRQGIAAEHF-------HAGLTPDDKQTVQERFRVGD 564

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFG-LAQLHQLRGRVGRGEEISSCILLYHPPL 600
            +++ AT    +GID  D  +++  +A+  G L    Q  GR GR  + + C+LLYH   
Sbjct: 565 LRVIAATNAFGMGIDKPDIRLVL--HADIPGSLENYLQEAGRAGRDRQPADCVLLYHSDD 622

Query: 601 SKNSYT 606
            +  +T
Sbjct: 623 VERQFT 628


>gi|116199007|ref|XP_001225315.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51]
 gi|118573324|sp|Q2GWJ5|FAL1_CHAGB RecName: Full=ATP-dependent RNA helicase FAL1
 gi|88178938|gb|EAQ86406.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51]
          Length = 394

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 139/341 (40%), Gaps = 57/341 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 49  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 102

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G     +  + + ++ +GQ HI+ GT     D
Sbjct: 103 PTRELATQIQSVVMALGDYMNVQCHACIGG---TNVGEDIRKLDYGQ-HIVSGTPGRVAD 158

Query: 389 SIQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L      ++++DE       G ++++    +   P   V++++AT     L +T
Sbjct: 159 MIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMT 218

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +       K    P        V I + R +  +E LK      +K  W    + +  ++
Sbjct: 219 T-------KFMTDP--------VRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDT 263

Query: 499 ----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T
Sbjct: 264 LTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLIST 323

Query: 549 TVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 324 DVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 359


>gi|317477122|ref|ZP_07936363.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906665|gb|EFV28378.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 392

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 159/393 (40%), Gaps = 66/393 (16%)

Query: 236 GQIALLLMRKQFKKEIGIP---INVEGKIAQKILRNIPFSPTKSQESAI------KDILQ 286
            QI L+LM   + K   +    +N+   I + I      +PT  Q  AI      KDIL 
Sbjct: 4   AQIILMLMFLAYSKTTFMTFKDLNITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILG 63

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIMAPIGILAQQHYEF 340
                           G+GKT    I +   ++A        +A+I+ P   LA Q  E 
Sbjct: 64  ------------CAQTGTGKTAAFAIPIIQQLQADRNLNKSIKALILTPTRELALQISEC 111

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--YYKLILV 398
           I  Y + TQ+   +I G + Q  +   L    H    I++ T     D +   Y +L  +
Sbjct: 112 IDDYARYTQVCHGVIFGGVNQRTQVNML----HKGVDILVATPGRLLDLMNQGYVRLNNI 167

Query: 399 ---IVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
              ++DE  R    G    +K  L +       LL +AT +P T++  SL +  +     
Sbjct: 168 QHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLLFSAT-MPDTII--SLTNSLL----- 219

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
               ++P+K  I P +   + IE+  V   E K+   +   I  K +     V  R    
Sbjct: 220 ----KQPVKISITPKSSTVDAIEQ-TVYFVEKKEKSKLLISILHKTQGQSVLVFSRTKHN 274

Query: 511 HEHFTSSIA-------IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +     +         IHG  S   ++S +++FK+G  +++IAT +   GID+ +  ++
Sbjct: 275 ADRIVRVLGKAGIGSQAIHGNKSQNARQSALENFKSGKIRVMIATDIAARGIDINELPLV 334

Query: 564 IIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           I  +        +H++ GR GR    G  +S C
Sbjct: 335 INYDLPDVPETYVHRI-GRTGRAGNSGTALSFC 366


>gi|256843398|ref|ZP_05548886.1| primosomal replication factor [Lactobacillus crispatus 125-2-CHN]
 gi|256614818|gb|EEU20019.1| primosomal replication factor [Lactobacillus crispatus 125-2-CHN]
          Length = 799

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 13/138 (9%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q+ A+  I Q + Q+     +L+G  GSGKT V L A++ A++ G  A+++ P I +  Q
Sbjct: 267 QQGALNQITQAIEQRQAETFLLEGITGSGKTEVYLHAISKALKQGRNALMLVPEISLTPQ 326

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ--DSIQY 392
              +   ++ Q     V ++   + +  +     RI  G+  +++G   A+F   D+I  
Sbjct: 327 MVRQVKARFGQE----VAVLHSALSEGEKYDEWRRIRRGETKVVVGARSAVFAPLDNIG- 381

Query: 393 YKLILVIVDEQHRFGVQQ 410
               L+++DE+H    +Q
Sbjct: 382 ----LIVIDEEHESSYKQ 395


>gi|255730427|ref|XP_002550138.1| eukaryotic initiation factor 4A [Candida tropicalis MYA-3404]
 gi|240132095|gb|EER31653.1| eukaryotic initiation factor 4A [Candida tropicalis MYA-3404]
          Length = 397

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 127/301 (42%), Gaps = 66/301 (21%)

Query: 299 QGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   G+GKT    I+    +   E   QA+I+AP   LA Q    I        + V   
Sbjct: 66  QAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITAIGLYLNVTVHAS 125

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--YYK------LILVIVDEQHRFG 407
            G    +   +A          I++GT     D I+  Y+K       IL   DE    G
Sbjct: 126 IGGTSMSDDIEAF----RSGVQIVVGTPGRVYDMIERRYFKTDKVKMFILDEADEMLSSG 181

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            ++++    +L  + T   V+L++AT     L +T+       K    P           
Sbjct: 182 FKEQIYNIFRLLPETT--QVVLLSATMPQEVLEVTT-------KFMNNPV---------- 222

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------------------SNFRSVVE 505
              RI  ++++ ++ L EG K ++I  ++EE K                    N R+ VE
Sbjct: 223 ---RI--LVKKDELTL-EGIKQFYINVELEEYKFDCLCDLYDSISVTQAVIFCNTRTKVE 276

Query: 506 RF-NSLHE-HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
              N L E HFT  ++ IH  +   +++++M  F++G+ ++LI+T ++  GIDV   S++
Sbjct: 277 FLTNKLREQHFT--VSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 334

Query: 564 I 564
           I
Sbjct: 335 I 335


>gi|255972909|ref|ZP_05423495.1| helicase [Enterococcus faecalis T1]
 gi|256618957|ref|ZP_05475803.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256762384|ref|ZP_05502964.1| helicase [Enterococcus faecalis T3]
 gi|256958868|ref|ZP_05563039.1| helicase [Enterococcus faecalis DS5]
 gi|256962038|ref|ZP_05566209.1| helicase [Enterococcus faecalis Merz96]
 gi|256965236|ref|ZP_05569407.1| helicase [Enterococcus faecalis HIP11704]
 gi|257078900|ref|ZP_05573261.1| helicase [Enterococcus faecalis JH1]
 gi|257085363|ref|ZP_05579724.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|257086858|ref|ZP_05581219.1| helicase [Enterococcus faecalis D6]
 gi|257089771|ref|ZP_05584132.1| helicase [Enterococcus faecalis CH188]
 gi|257415987|ref|ZP_05592981.1| helicase [Enterococcus faecalis AR01/DG]
 gi|257422733|ref|ZP_05599723.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294779570|ref|ZP_06744964.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300861181|ref|ZP_07107268.1| DEAD-box ATP-dependent RNA helicase CshB [Enterococcus faecalis
           TUSoD Ef11]
 gi|255963927|gb|EET96403.1| helicase [Enterococcus faecalis T1]
 gi|256598484|gb|EEU17660.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256683635|gb|EEU23330.1| helicase [Enterococcus faecalis T3]
 gi|256949364|gb|EEU65996.1| helicase [Enterococcus faecalis DS5]
 gi|256952534|gb|EEU69166.1| helicase [Enterococcus faecalis Merz96]
 gi|256955732|gb|EEU72364.1| helicase [Enterococcus faecalis HIP11704]
 gi|256986930|gb|EEU74232.1| helicase [Enterococcus faecalis JH1]
 gi|256993393|gb|EEU80695.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|256994888|gb|EEU82190.1| helicase [Enterococcus faecalis D6]
 gi|256998583|gb|EEU85103.1| helicase [Enterococcus faecalis CH188]
 gi|257157815|gb|EEU87775.1| helicase [Enterococcus faecalis ARO1/DG]
 gi|257164557|gb|EEU94517.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294453360|gb|EFG21768.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300850220|gb|EFK77970.1| DEAD-box ATP-dependent RNA helicase CshB [Enterococcus faecalis
           TUSoD Ef11]
 gi|323480612|gb|ADX80051.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
          Length = 449

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 145/345 (42%), Gaps = 39/345 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT+ QE  I  I +  S       I Q   GSGKT   L+ +   V+      Q VI AP
Sbjct: 25  PTEVQEKLIPIIKKGKSV------IGQSQTGSGKTHTFLLPLMDKVKPTIDEVQIVITAP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q Y+  ++  + +Q  + + +  +    +++ L ++ H Q H++IGT     D 
Sbjct: 79  SRELANQIYQEAQQLARFSQPEIRV-SNFVGGTDKQRQLNKLKHQQPHVVIGTPGRILDM 137

Query: 389 ----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
               +++ +     +VDE         L +   A    +    A  +P  L +       
Sbjct: 138 MNEQALKVHTAFAFVVDE-----ADMTLDMGFLAEVDQI----AGRLPEKLQMLVFSATI 188

Query: 445 ISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
             K+  +P  +K    P+   I P   I E I+   ++ ++GK +  I  Q+        
Sbjct: 189 PEKL--RPFLKKYLENPVIEHIKPKAVISETIDNW-LISTKGKNSNQIIYQLLTIGHPYL 245

Query: 500 ---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +  +R + + ++       +A IHG ++  +++ VM   +N   + ++AT +   
Sbjct: 246 AIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GID+   S +I     H     +H++ GR GR     + I LY P
Sbjct: 306 GIDIEGVSHVINAEVPHELDFFIHRV-GRTGRNGLNGTAITLYSP 349


>gi|229521743|ref|ZP_04411161.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae TM 11079-80]
 gi|229341337|gb|EEO06341.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae TM 11079-80]
          Length = 734

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    SQ+     +L+G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 199 PKLNQEQAIA-IAAVNSQQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 258 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 312 FAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 372 KYHHLQLTQRAGNALPTRN 390


>gi|168821550|ref|ZP_02833550.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205341873|gb|EDZ28637.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088506|emb|CBY98265.1| Primosomal protein N' ATP-dependent helicase priA; Replication
           factor Y [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 732

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|196038839|ref|ZP_03106147.1| primosomal protein N` [Bacillus cereus NVH0597-99]
 gi|196030562|gb|EDX69161.1| primosomal protein N` [Bacillus cereus NVH0597-99]
          Length = 801

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 262 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 321

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 322 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 377

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 378 P---FENLGIIIIDEEHESSYKQ 397


>gi|164683438|gb|ABY66383.1| eukaryotic initiation factor 4A [Plutella xylostella]
          Length = 422

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 127/296 (42%), Gaps = 52/296 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +     +      
Sbjct: 90  IAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 149

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRFGV 408
              G     + R+ + ++  G  H+++GT     D I    L      L ++DE      
Sbjct: 150 ACIGG---TNVREDMRQLESG-VHVVVGTPGRVYDMITRRALRANTIKLFVLDE-----A 200

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            + L    K     V  M +  +   L+  ++ D D+ +++ +   R+PI+ ++      
Sbjct: 201 DEMLSRGFKDQIHDVFKMLSADVQVILLSATMPD-DVLEVS-RCFMREPIRILV------ 252

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKE------------------SNFRSVVERFN-S 509
               ++ ++ L EG K ++I  + EE K                    N R  V+    S
Sbjct: 253 ----QKEELTL-EGIKQFFISIEQEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTES 307

Query: 510 LHEH-FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +HE  FT  ++ +HG M   ++E +M  F+ G+ ++LI T ++  GIDV   S +I
Sbjct: 308 MHERDFT--VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 361


>gi|73966205|ref|XP_864504.1| PREDICTED: similar to eukaryotic translation initiation factor 4A,
           isoform 1 isoform 4 [Canis familiaris]
          Length = 351

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 18  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 77

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 78  ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 134

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 135 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 179

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 180 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 239

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 240 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 290


>gi|16767361|ref|NP_462976.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167991672|ref|ZP_02572771.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|16422662|gb|AAL22935.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|205329942|gb|EDZ16706.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261249211|emb|CBG27073.1| primosomal protein replication factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996395|gb|ACY91280.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160602|emb|CBW20133.1| primosomal protein replication factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915211|dbj|BAJ39185.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225387|gb|EFX50445.1| Helicase PriA essential for oriC/DnaA-independent DNA replication
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|323132441|gb|ADX19871.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990924|gb|AEF09907.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 732

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|312278743|gb|ADQ63400.1| Replication restart DNA helicase PriA [Streptococcus thermophilus
           ND03]
          Length = 798

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/400 (20%), Positives = 156/400 (39%), Gaps = 112/400 (28%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   +  G  A+++ P I +  Q    FI ++      +V I+
Sbjct: 285 LLEGVTGSGKTEVYLHLIERTLAMGKTAIVLVPEISLTPQMTNRFISRFGD----LVAIM 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ--DSIQYYKLILVIVDEQH-------- 404
              +    +     ++  GQA +++G   A+F   D+I       +I+DE+H        
Sbjct: 341 HSGLSDGEKFDEWRKVRSGQAKVVVGARSAIFAPLDNIG-----AIIIDEEHEATYKQES 395

Query: 405 --RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP---------- 452
             R+  +    L  K+    ++L +ATP   +      G     ++TE+           
Sbjct: 396 NPRYHARDVALLRSKSHGAILVLGSATPSIESRARAQKGVYHFFELTERANPSAKIPQVE 455

Query: 453 -------AGRKPIKTVIIPINRIDEVIERL----KVVLSEGKKAYW-------------- 487
                   GR+       P+  ++++ ERL    +VVL   ++ Y               
Sbjct: 456 VVDFKDFVGRQEASDFTPPL--LEKIRERLARKEQVVLLLNRRGYSSFVMCRDCGYVDDC 513

Query: 488 -----------------------------ICPQIEEKKESNFRSVVER-FNSLHEHFTSS 517
                                        +CP  + ++   + +  ++ ++ L E F  +
Sbjct: 514 PNCDISLTLHMDTKTMNCHYCDFQKAIPNVCPNCQSRQIRYYGTGTQKAYDQLTELFPEA 573

Query: 518 IAIIHGRMSDIDK-------ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE- 569
             I   RM D+D        E ++++F +G   +L+ T +I  G+D  + +++ + NA+ 
Sbjct: 574 RVI---RM-DVDTTRKKGAHEKLLETFGSGKADILLGTQMIAKGLDFPNVTLVGVLNADT 629

Query: 570 -----HFGLAQ-----LHQLRGRVGRGEEISSCILLYHPP 599
                 F  A+     L Q+ GR GR ++    I+  + P
Sbjct: 630 SLNLPDFRSAERTFQLLTQVAGRAGRADKEGEVIIQTYNP 669


>gi|300021887|ref|YP_003754498.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523708|gb|ADJ22177.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 652

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 135/325 (41%), Gaps = 44/325 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQ-HYEFIKKYTQ 346
           ++    GSGKT+   +AMA+ +    +         A+I+AP   LA Q   E    Y  
Sbjct: 40  LVSAQTGSGKTVAFGLAMASTLLGEAERLSQAAEPLALIIAPTRELAMQVQRELDWLYAD 99

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVD 401
               +V  + G   +A  R+    +  G AHI++GT    +D ++  +L L     V++D
Sbjct: 100 TGARVVTCVGGMDARAEARQ----LGFG-AHIVVGTPGRLRDHLERRRLDLTKLAAVVLD 154

Query: 402 EQHR---FGVQQRLKLTQKAT--APHVLLMTATPIPR---TLVLTSLGD---IDISKITE 450
           E       G ++ L+    AT      LL +AT +PR    L      D   I+  K  E
Sbjct: 155 EADEMLDLGFREDLEFILDATPEGRQTLLFSAT-MPREIEALARRYQRDAVRIETVKRNE 213

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           + A        I P +  + ++  L+    E   A   C   E  K ++ R +   F ++
Sbjct: 214 QHADIDYRAIRIAPADTENAIVNVLR--FHEADAALVFCSTREAVKRTHARLLERGFAAV 271

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                     + G ++  ++   + + ++   ++L+AT V   G+D+   +++I  +  +
Sbjct: 272 ---------ALSGELTQNERTHALQALRDSRARVLVATDVAARGLDLPALALVIHADLPN 322

Query: 571 FGLAQLHQLRGRVGRGEEISSCILL 595
                LH+  GR GR       +L+
Sbjct: 323 NAETLLHR-SGRTGRAGNKGLSVLI 346


>gi|197251488|ref|YP_002149023.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197215191|gb|ACH52588.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 732

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|196035838|ref|ZP_03103240.1| primosomal protein N` [Bacillus cereus W]
 gi|195991487|gb|EDX55453.1| primosomal protein N` [Bacillus cereus W]
          Length = 801

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 262 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 321

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 322 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 377

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 378 P---FENLGIIIIDEEHESSYKQ 397


>gi|12381896|dbj|BAB21258.1| eukaryotic initiation factor 4A [Oryza sativa]
 gi|12381898|dbj|BAB21259.1| eukaryotic initiation factor 4A [Oryza sativa]
          Length = 414

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 125/312 (40%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    Q++++AP   LAQQ  + ++       + V 
Sbjct: 82  IQQAQSGTGKTATFCSGILQQLDYGLVECQSLVLAPTRELAQQIEKVMRALGDYLGVKVH 141

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G      +    +RI     H+++GT     D ++   L        +L   DE   
Sbjct: 142 ACVGGTSVREQ----QRILASGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLS 197

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V + +AT  P  L +T        +  +KP        V I
Sbjct: 198 RGFKDQIYDIFQLLPPKIQVGVFSATMPPEGLEITL-------RFMDKP--------VRI 242

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +   E +K      +K  W    + +  +S          N   +V+        
Sbjct: 243 LVKRDELTREGIKQFYVNVEKEDWKLDTLCDLYDSLAITQSVIFVNTLRMVDWLTDKMRS 302

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M  I ++ +M  F++G+ ++LI T +++ GIDV   S++I  +      
Sbjct: 303 RDHTVSATHGDMDQITRDIIMREFRSGSSRVLITTDLLDRGIDVQQVSLVINYDLSTQTE 362

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 363 NYLHRI-GRSGR 373


>gi|86144457|ref|ZP_01062789.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
 gi|85837356|gb|EAQ55468.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
          Length = 523

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 128/293 (43%), Gaps = 41/293 (13%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHII 379
           +A+++ P   LA Q    + KY  N  +   ++ G +   PQ      ++++  G + ++
Sbjct: 75  RALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQ------MQKLRKG-SDVL 127

Query: 380 IGTHALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T         Q+++++ +L ++++DE  R      ++  +K       ++   P  R 
Sbjct: 128 VATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRK-------ILAFLPKKRQ 180

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            +L S    D  +   K     P++  + P N     +E+    + + KKA  +   I  
Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLI-- 238

Query: 495 KKESNFRSVV------------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            K++++R V+             RF  L E   +S A IHG  S   +   +++FK G  
Sbjct: 239 -KDNDWRQVLVFSKTKHGANKLARF--LEEQDITS-APIHGNKSQGARTKALENFKTGKV 294

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           ++L+AT +   GID+     ++  +  +     +H++ GR GR  E+   I L
Sbjct: 295 RVLVATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRI-GRTGRAGEVGKAISL 346


>gi|308063850|gb|ADO05737.1| primosome assembly protein PriA [Helicobacter pylori Sat464]
          Length = 619

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + ++A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHSA-SLLFGDTGSGKTEIYMHSIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      + + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKRVFKEN----LGLWHSKLSQTQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 219 LKELGLIIVDEEHDFS 234


>gi|257081095|ref|ZP_05575456.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
 gi|256989125|gb|EEU76427.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
          Length = 513

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 139/337 (41%), Gaps = 42/337 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + M   ++A     Q +++AP   LA Q  E + +  ++ +I V+
Sbjct: 42  IGQAQTGTGKTAAFGLPMLNKIDADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQ 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHR 405
            + G      + + L+     + HI++GT     D I    L L  V        DE   
Sbjct: 102 AVYGGADIGRQIRGLK----DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLN 157

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  + ++  ++Q       LL +AT  P      ++ +I + K  ++P   K IK   +
Sbjct: 158 MGFLEDIEKIISQVPEQRQTLLFSATMPP------AIKNIGV-KFMKQPEHVK-IKAKEM 209

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--- 520
             + ID+       V S+  + + I  ++ + +      V  R     +     +     
Sbjct: 210 TADLIDQY-----YVRSKDFEKFDIMTRLLDVQTPELTIVFGRTKRRVDELARGLEARGY 264

Query: 521 ----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG +S   + SV+ SFKNG   +L+AT V   G+D+   + +   +      + +
Sbjct: 265 KAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYV 324

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           H++ GR GR  +    +    P    N    L V++N
Sbjct: 325 HRI-GRTGRAGKGGMSVTFVTP----NEMGYLHVIEN 356


>gi|242372984|ref|ZP_04818558.1| superfamily II DNA/RNA helicase ComFA [Staphylococcus epidermidis
           M23864:W1]
 gi|242349310|gb|EES40911.1| superfamily II DNA/RNA helicase ComFA [Staphylococcus epidermidis
           M23864:W1]
          Length = 418

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 154/347 (44%), Gaps = 59/347 (17%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF+ ++ Q+ A K I+  +     +L  L    G+GKT +    +  A + G    I++
Sbjct: 81  LPFTLSEQQQYASKSIVNAIKHSKSLL--LYAVTGAGKTEMMFEGIRLARQLGHNIAILS 138

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-HALFQ 387
           P   +  +  + IK   +N +I +          H++++ E       H +I T H LF+
Sbjct: 139 PRVDVVIEISQRIKDAFKNEEIDI---------LHQKRSQEY----NGHFVISTVHQLFR 185

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLT------QKATAPHVLLMTATPIPRTLVLTSLG 441
              Q++  I +  DE   F +    +LT       K+   H+  MTATP PR L    L 
Sbjct: 186 FK-QHFDTIFI--DEVDAFPLSMDPQLTIAIQTASKSIYSHIY-MTATP-PRHL----LQ 236

Query: 442 DIDISKITEKPA--GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ---IEEKK 496
            +  +++ + PA   R P+     P+ +     +  K+  S       + PQ   I +K+
Sbjct: 237 QMSSNQVIKLPARFHRHPL-----PVPQF----KYFKLNQSR------VQPQLLNIFQKQ 281

Query: 497 ESNFRSVVERFN---SLHEHFTSSIAIIHGRMS----DIDKESVMDSFKNGTCKLLIATT 549
               R  +  FN   ++H+ +     +I   +S    D  +   +++ + G   ++  TT
Sbjct: 282 MDQQRYTLVFFNHIETMHQTYLKYRTLIPNLISVSSEDAHRFEKVEALRRGEHFIVFTTT 341

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           ++E G  +    +I++ NAE F  A L Q+ GRVGR  E    ++L+
Sbjct: 342 ILERGFTMAKLDVIVM-NAETFEKAALVQIAGRVGRKIEAPQGLVLF 387


>gi|255971301|ref|ZP_05421887.1| helicase [Enterococcus faecalis T1]
 gi|256617719|ref|ZP_05474565.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256761605|ref|ZP_05502185.1| helicase [Enterococcus faecalis T3]
 gi|256854305|ref|ZP_05559669.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256957293|ref|ZP_05561464.1| helicase [Enterococcus faecalis DS5]
 gi|256959973|ref|ZP_05564144.1| helicase [Enterococcus faecalis Merz96]
 gi|256964332|ref|ZP_05568503.1| helicase [Enterococcus faecalis HIP11704]
 gi|257077733|ref|ZP_05572094.1| helicase [Enterococcus faecalis JH1]
 gi|257083763|ref|ZP_05578124.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|257086188|ref|ZP_05580549.1| helicase [Enterococcus faecalis D6]
 gi|257089260|ref|ZP_05583621.1| helicase [Enterococcus faecalis CH188]
 gi|257415413|ref|ZP_05592407.1| helicase [Enterococcus faecalis AR01/DG]
 gi|257418444|ref|ZP_05595438.1| helicase [Enterococcus faecalis T11]
 gi|257421095|ref|ZP_05598085.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294781261|ref|ZP_06746607.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300859873|ref|ZP_07105961.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TUSoD Ef11]
 gi|255962319|gb|EET94795.1| helicase [Enterococcus faecalis T1]
 gi|256597246|gb|EEU16422.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256682856|gb|EEU22551.1| helicase [Enterococcus faecalis T3]
 gi|256709865|gb|EEU24909.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256947789|gb|EEU64421.1| helicase [Enterococcus faecalis DS5]
 gi|256950469|gb|EEU67101.1| helicase [Enterococcus faecalis Merz96]
 gi|256954828|gb|EEU71460.1| helicase [Enterococcus faecalis HIP11704]
 gi|256985763|gb|EEU73065.1| helicase [Enterococcus faecalis JH1]
 gi|256991793|gb|EEU79095.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|256994218|gb|EEU81520.1| helicase [Enterococcus faecalis D6]
 gi|256998072|gb|EEU84592.1| helicase [Enterococcus faecalis CH188]
 gi|257157241|gb|EEU87201.1| helicase [Enterococcus faecalis ARO1/DG]
 gi|257160272|gb|EEU90232.1| helicase [Enterococcus faecalis T11]
 gi|257162919|gb|EEU92879.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294451597|gb|EFG20053.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300850691|gb|EFK78440.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TUSoD Ef11]
 gi|323480025|gb|ADX79464.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
          Length = 515

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 139/337 (41%), Gaps = 42/337 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + M   ++A     Q +++AP   LA Q  E + +  ++ +I V+
Sbjct: 42  IGQAQTGTGKTAAFGLPMLNKIDADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQ 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHR 405
            + G      + + L+     + HI++GT     D I    L L  V        DE   
Sbjct: 102 AVYGGADIGRQIRGLK----DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLN 157

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  + ++  ++Q       LL +AT  P      ++ +I + K  ++P   K IK   +
Sbjct: 158 MGFLEDIEKIISQVPEQRQTLLFSATMPP------AIKNIGV-KFMKQPEHVK-IKAKEM 209

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--- 520
             + ID+       V S+  + + I  ++ + +      V  R     +     +     
Sbjct: 210 TADLIDQY-----YVRSKDFEKFDIMTRLLDVQTPELTIVFGRTKRRVDELARGLEARGY 264

Query: 521 ----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG +S   + SV+ SFKNG   +L+AT V   G+D+   + +   +      + +
Sbjct: 265 KAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYV 324

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           H++ GR GR  +    +    P    N    L V++N
Sbjct: 325 HRI-GRTGRAGKGGMSVTFVTP----NEMGYLHVIEN 356


>gi|227878884|ref|ZP_03996789.1| primosomal replication factor [Lactobacillus crispatus JV-V01]
 gi|256849780|ref|ZP_05555211.1| primosomal replication factor [Lactobacillus crispatus MV-1A-US]
 gi|262046521|ref|ZP_06019482.1| primosomal replication factor [Lactobacillus crispatus MV-3A-US]
 gi|227861518|gb|EEJ69132.1| primosomal replication factor [Lactobacillus crispatus JV-V01]
 gi|256713269|gb|EEU28259.1| primosomal replication factor [Lactobacillus crispatus MV-1A-US]
 gi|260572970|gb|EEX29529.1| primosomal replication factor [Lactobacillus crispatus MV-3A-US]
          Length = 799

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 13/138 (9%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q+ A+  I Q + Q+     +L+G  GSGKT V L A++ A++ G  A+++ P I +  Q
Sbjct: 267 QQGALNQITQAIEQRQAETFLLEGITGSGKTEVYLHAISKALKQGRNALMLVPEISLTPQ 326

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ--DSIQY 392
              +   ++ Q     V ++   + +  +     RI  G+  +++G   A+F   D+I  
Sbjct: 327 MVRQVKARFGQE----VAVLHSALSEGEKYDEWRRIRRGETKVVVGARSAVFAPLDNIG- 381

Query: 393 YKLILVIVDEQHRFGVQQ 410
               L+++DE+H    +Q
Sbjct: 382 ----LIVIDEEHESSYKQ 395


>gi|171315596|ref|ZP_02904831.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171099267|gb|EDT44026.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 465

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 138/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++      QA+++ P   LA Q  + +++  +  + + V
Sbjct: 48  IAQAKTGSGKTAAFSLALLARLDTRRFDVQAMVLCPTRELADQVAQEVRRLARAEENVKV 107

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHI++GT     D ++   L L     +++DE  R  
Sbjct: 108 LTLCGGTPMRPQAQSLE---HG-AHIVVGTPGRIMDHLERGNLKLDALNTLVLDEADRM- 162

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               L +        V  M  T   +TL+ ++     I+K++++   R P K V +    
Sbjct: 163 ----LDMGFFDDIAKVARMCPT-TRQTLLFSATYPDGIAKLSQQFL-RNP-KEVKLEERH 215

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            +  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 216 DNSKIRQRFYEVTETERLHAVGQLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 275

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 276 -HGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI- 333

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 334 GRTGRADQ 341


>gi|204930216|ref|ZP_03221193.1| putative primosomal protein N' [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320620|gb|EDZ05822.1| putative primosomal protein N' [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 732

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|157145669|ref|YP_001452988.1| ATP-dependent RNA helicase DbpA [Citrobacter koseri ATCC BAA-895]
 gi|157082874|gb|ABV12552.1| hypothetical protein CKO_01417 [Citrobacter koseri ATCC BAA-895]
          Length = 457

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 135/332 (40%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     Q++++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQHIDASLFQTQSLVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI------ 399
              + G  P   +R +L+   H    II+ T     D +Q   +       LV+      
Sbjct: 105 T--LCGGQPFGAQRDSLQHAPH----IIVATPGRLLDHLQKGTVSLDALQTLVMDEADRM 158

Query: 400 --------VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                   +DE  RF   +R  L   AT P  +   +  + +  +   +  +D     E+
Sbjct: 159 LDMGFSDAIDEVIRFAPSRRQTLLFSATWPEAIAAISGRVQQNPLTIEIDSVDALPSIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+                L+ +LS+ + A  +   +    + + +SV +
Sbjct: 219 QFFETSSQGKIPL----------------LQKLLSQHQPASCV---VFCNTKKDCQSVCD 259

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             NS+ +   S    +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 260 ALNSVGQSALS----LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|148667738|gb|EDL00155.1| mCG1035528 [Mus musculus]
          Length = 406

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKIFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|124505577|ref|XP_001351530.1| eukaryotic initiation factor, putative [Plasmodium falciparum 3D7]
 gi|23498289|emb|CAD49261.1| eukaryotic initiation factor, putative [Plasmodium falciparum 3D7]
 gi|117956286|gb|ABK58711.1| eIF4A-like protein [Plasmodium falciparum]
          Length = 390

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 143/337 (42%), Gaps = 51/337 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+  IK IL      N    ILQ   G+GKT V  +     V       Q +I++P
Sbjct: 40  PSAIQQRGIKPIL------NGRDVILQSQSGTGKTCVFAVGALNCVNRNLNETQVIILSP 93

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HA 384
              LA+Q  +          + +    G    +   KAL    +   H+I GT     H 
Sbjct: 94  TRELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDIKAL----NNGVHVISGTPGRIYHM 149

Query: 385 LFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHV-LLMTATPIPRTLVLTSL 440
           L    ++   +  +++DE       G ++++    +  +P+  +++++  +P+       
Sbjct: 150 LNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIILSSATLPQ------- 202

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
              ++ +IT K    KP+K   I + R +  +E +K      +K  W    + +  ES  
Sbjct: 203 ---EVLEITNKFM-HKPVK---ILVKRDELTLEGIKQFFVSIEKEQWKYETLADLYESLT 255

Query: 499 --------NFRSVVERFNS--LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                   N +  V+      L  +FT  +  +H  MS  +++ +M  F+    ++LI+T
Sbjct: 256 ITQAVVFCNTQMKVDWLTKKMLESNFT--VCKMHAGMSQSERDDIMLKFRQCKFRVLIST 313

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            +   G+DV + S+++  +  +   + +H++ GR GR
Sbjct: 314 DIWGRGLDVQEVSLVVNYDLPNSRESYIHRI-GRSGR 349


>gi|52424504|ref|YP_087641.1| primosome assembly protein PriA [Mannheimia succiniciproducens
           MBEL55E]
 gi|52306556|gb|AAU37056.1| PriA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 739

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 7/116 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L G  GSGKT + L  +   ++   Q +++ P   L  Q    ++++     + +++I 
Sbjct: 226 LLDGVTGSGKTEIYLQYIEEILKQDKQVLVLVPEISLTPQT---VQRFQARFNVDIDVIH 282

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
            NM  + R    +R   GQ+ I+IGT  ALF    Q+ +L L+++DE+H    +Q+
Sbjct: 283 SNMNDSQRLLVWQRARTGQSAIVIGTRSALF---TQFKRLGLIVIDEEHDNSFKQQ 335


>gi|325299294|ref|YP_004259211.1| primosomal protein N' [Bacteroides salanitronis DSM 18170]
 gi|324318847|gb|ADY36738.1| primosomal protein N' [Bacteroides salanitronis DSM 18170]
          Length = 819

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 22/207 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           G++A+     +P +P +++Q+ A   I+Q  + K   L  L G   SGKT + +  +  A
Sbjct: 268 GRLARGTADTVPLNPLSEAQQKAYDAIMQAFASKQTCL--LHGVTSSGKTEIYIHLIEQA 325

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER-IAHGQA 376
           + AG Q + + P   L  Q  E +++   N    + I     P A R +  ++ ++    
Sbjct: 326 IRAGKQVLYLLPEIALTTQITERLRRVFGNR---LGIYHSKFPDAERVEIWQKQLSEHDY 382

Query: 377 HIIIGTHA-LFQDSIQYYKLILVIVDEQH-----------RFGVQQRLKLTQKATAPHVL 424
            +I+G  + +F   + + +L LVIVDE+H           R+  +    +         L
Sbjct: 383 DVILGVRSSVF---LPFRRLGLVIVDEEHENTYKQQEPAPRYHARNAAMVLASMFGAKTL 439

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEK 451
           L TATP   T      G     ++TE+
Sbjct: 440 LGTATPSIETYYNAVQGKYGFVQLTER 466


>gi|229072918|ref|ZP_04206114.1| ATP-dependent RNA helicase dbpA [Bacillus cereus F65185]
 gi|228710164|gb|EEL62142.1| ATP-dependent RNA helicase dbpA [Bacillus cereus F65185]
          Length = 481

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 133/328 (40%), Gaps = 50/328 (15%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK---PIKT 460
             F  Q    + +  T    +L +AT +P           D+ K++           IK 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPE----------DVEKLSRTYMNSPIHIEIKA 209

Query: 461 VIIPINRID----EVIERLK------VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             I  ++I+    EVIE  K      V   E   +  I  + +E  +  +R + +R N  
Sbjct: 210 AGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-KRANYP 268

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            +        IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +   
Sbjct: 269 CDK-------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPL 321

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP 598
              + +H+  GR GR       I    P
Sbjct: 322 EKESYVHRT-GRTGRAGNSGKAITFITP 348


>gi|195998213|ref|XP_002108975.1| hypothetical protein TRIADDRAFT_63563 [Trichoplax adhaerens]
 gi|190589751|gb|EDV29773.1| hypothetical protein TRIADDRAFT_63563 [Trichoplax adhaerens]
          Length = 654

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 133/319 (41%), Gaps = 37/319 (11%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     ++         G  A+I+ P   LAQQ +     + +  +I   
Sbjct: 125 TGSGKTLAYVLPSIIHIKNQPPLRHGDGPIALILCPTRELAQQVHSVSTTFGRLARINCA 184

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G  P+  + + L R       I + T     D ++  +  L     +++DE  R   
Sbjct: 185 CIYGGSPKGPQLRELSR----GVEICVATPGRLLDFLESRRTNLNRCSYLVLDEADRMLD 240

Query: 407 -GVQQRLK-LTQKATAPHVLLMTATPIP---RTLVLTSLGD-IDISKITEKPAGRKPIKT 460
            G + ++K +      P   +M +   P   RTL    L D + I+  +        IK 
Sbjct: 241 MGFEPQIKQIIGSIKCPRQTVMWSATWPKEIRTLAREFLRDYVQINIGSSDLTTNHNIKQ 300

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--- 517
            I+ + R +E  ++L  +LS+      I  Q +EKK   F    ++ + L      S   
Sbjct: 301 -IVEVCREEEKEDKLCKLLSD------ILRQ-DEKKTIVFVETKKKSDYLSRRLVRSGWP 352

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +  IHG     +++ V+  F++G   +LIAT V   G+D+ D  ++I  +  +     +H
Sbjct: 353 VLCIHGDKCQSERDRVLSEFRSGRIPVLIATDVAARGLDISDVKLVINYDFPNNSEDYVH 412

Query: 578 QLRGRVGRGEEISSCILLY 596
           ++ GR  R  +  +    +
Sbjct: 413 RI-GRTARSGKTGTAYTFF 430


>gi|149038672|gb|EDL92961.1| rCG22084, isoform CRA_a [Rattus norvegicus]
 gi|149038673|gb|EDL92962.1| rCG22084, isoform CRA_a [Rattus norvegicus]
          Length = 398

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +  ++I  + 
Sbjct: 112 AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSP 171

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                + +H+  GR GR      C+  Y P
Sbjct: 172 PQDVESYIHR-SGRTGRAGRTGICVCFYQP 200


>gi|120564784|gb|ABM30181.1| VASA3n [Paragonimus westermani]
          Length = 606

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 146/360 (40%), Gaps = 78/360 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-------------AMAAAVE 319
           PT  Q+ AI  I       NR L +     GSGKT   LI             ++ A +E
Sbjct: 154 PTPVQKHAIPIIA-----SNRDL-MACAQTGSGKTAAFLIPILNRMIEEGPGDSLIATME 207

Query: 320 AGGQ-----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
              +     A+I+AP   LA Q +E  +K+   ++I   ++ G    A  R  L  ++ G
Sbjct: 208 TNRRKQFPVALILAPTRELASQIFEDARKFAYRSRIRPCVLYGG---ADMRAQLIEVSKG 264

Query: 375 QAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ----------------Q 410
             ++++ T     D+I+  ++ L     +I+DE  R    G +                +
Sbjct: 265 -CNLLVATPGRLTDAIERGRIGLDHCRFLILDEADRMLDMGFEPQIRRIVEQDNLPPSGK 323

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           R  L   AT PH + M A       +  ++G +  +            + +   I+ ++E
Sbjct: 324 RQTLMFSATFPHEIQMLAKDFLSRYIFLAVGRVGSTS-----------ENITQSISWVEE 372

Query: 471 VIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRM 525
             +R  +V  LS           +E K+ ++         SL ++  S    +A IHG  
Sbjct: 373 DKKRDALVDLLSSSDPGVLTLVFVETKRGAD---------SLEDYLFSQKFHVASIHGDR 423

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +  D+E  +  F+NG   +L+AT V   G+D+ +   +I  +        +H++ GR GR
Sbjct: 424 TQDDRELALPCFRNGRTPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRI-GRTGR 482


>gi|170727393|ref|YP_001761419.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169812740|gb|ACA87324.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 447

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 139/361 (38%), Gaps = 65/361 (18%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL-------IAMAAAVEAGGQA 324
           +PT+ QE AI      +S K+ M        GSGKTL  L       I+  A  +   + 
Sbjct: 23  TPTEIQEMAIP---VGLSGKDLMA---SSKTGSGKTLAFLLPAMQRIISTKALSKRDPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q Y  ++    NTQ     I G      + KAL R      H ++ T  
Sbjct: 77  LILLPTRELANQVYSQLRLLVANTQYKALKILGGENFNDQAKALAR----DPHFVVATPG 132

Query: 385 LFQDSIQYYK-----LILVIVDEQHR---FGVQQRLKLTQKATAPH----VLLMTAT--- 429
              D +  +      L L+I+DE  R    G   +LK    A A H     L+ +AT   
Sbjct: 133 RLADHLAQHHFHLNGLELLILDEADRMLDLGFADQLKAIN-AAADHKRRQTLMFSATLNH 191

Query: 430 ----PIPRTL------VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
                I   L      V     +I+   IT+K          I   + +D     L+ +L
Sbjct: 192 NEINEIASELLKDPKHVAVGASNIENQDITQK----------IYLCDHLDHKEALLQSIL 241

Query: 480 SEG-KKAYWICPQIEEKKESNFRSVVER-FNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
             G +K   I     +  +   + + E  FN+         A + G ++   +  +MD F
Sbjct: 242 KRGEQKQVIIFTATRQDTDRLAKKLAEEGFNT---------ASLSGDLNQSARNQIMDQF 292

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G   +L+ T V   G+D+++ S++I  +   F    +H++ GR  R       I    
Sbjct: 293 SRGMQDILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTARAGAKGDAISFVG 351

Query: 598 P 598
           P
Sbjct: 352 P 352


>gi|50405707|ref|XP_456492.1| DEHA2A03454p [Debaryomyces hansenii CBS767]
 gi|74659594|sp|Q6BZ77|DBP3_DEBHA RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49652156|emb|CAG84444.1| DEHA2A03454p [Debaryomyces hansenii]
          Length = 527

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 122/287 (42%), Gaps = 33/287 (11%)

Query: 300 GDVGSGKTLV----ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            + GSGKT      A+  +    + G + + ++P   LA Q Y+ +   T NT +    +
Sbjct: 161 AETGSGKTFAFGVPAINNILTHDKKGLKVLCISPTRELALQIYDNLVDLTANTPLKCVAV 220

Query: 356 TGNMPQAHRRKALERIA-----HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF---G 407
            G + +  +  +L   +      G+   ++   AL  DSI+Y     +++DE  R    G
Sbjct: 221 YGGVSKHEQVSSLRNASVVVATPGRLIDLLNDGALSLDSIEY-----LVLDEADRMLEKG 275

Query: 408 VQQRLK--LTQKATAPHVLLMTATPIPR------TLVLTSLGDIDISKITEKPAGRK--P 457
            +Q +K  + Q   A    LM     P+      +  + S   + I    E  A ++   
Sbjct: 276 FEQDIKSVMQQTNHANRQTLMFTATWPKEVRELASTFMNSPVKVSIGDRNELSANKRITQ 335

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           I  VI P ++  +++  L+   S   K   +      KKE+       R  +L    +  
Sbjct: 336 IVEVIEPYDKEKKLLSLLRKYQSGSNKDDKVLIFALYKKEAT------RIENLLVRNSFK 389

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           ++ +HG +S   + S + +FK G   LL+AT V   G+D+ +  ++I
Sbjct: 390 VSAVHGDLSQQQRTSALGAFKAGKTTLLLATDVAARGLDIPNVKVVI 436


>gi|73966207|ref|XP_536623.2| PREDICTED: similar to eukaryotic translation initiation factor 4A,
           isoform 1 isoform 1 [Canis familiaris]
 gi|50814|emb|CAA26842.1| unnamed protein product [Mus musculus]
 gi|50819|emb|CAA26845.1| unnamed protein product [Mus musculus]
          Length = 390

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 57  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 116

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 117 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 173

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 174 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 218

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 219 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 278

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 279 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 329


>gi|25027342|ref|NP_737396.1| putative ATP-dependent RNA helicase [Corynebacterium efficiens
           YS-314]
 gi|23492623|dbj|BAC17596.1| putative ATP-dependent RNA helicase [Corynebacterium efficiens
           YS-314]
          Length = 369

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 138/347 (39%), Gaps = 50/347 (14%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LA Q  E +++   N  + V    G  P   +  ALE        +++GT
Sbjct: 29  RALVIVPTRELAVQVGEDLERAAVNLPLKVFTFYGGTPYEEQIDALET----GVDVVVGT 84

Query: 383 HALFQDSIQYYKL------ILVI--VDEQHRFGVQQRL-KLTQKATAPH-VLLMTAT-PI 431
                D  Q   L      ILV+   DE    G    + K+ +  T  H  +L +AT P 
Sbjct: 85  PGRLLDLYQRGALRLDKVAILVLDEADEMLDLGFLPDIEKIMRALTHKHQTMLFSATMPG 144

Query: 432 PRTLVLTSLGDIDI---SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           P   +  S  D  +   ++  +  A     + ++   +R+D+     +++ + G+    I
Sbjct: 145 PILTLARSFLDKPVHIRAESADSAATHATTRQIVFQAHRMDKEAVTARILQARGRGKTII 204

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +         +  R       FT  +  +HG M    +E  +++F++G   +L+AT
Sbjct: 205 FARTKRTAAQVAEDLAAR------GFT--VGSVHGDMGQPARERSLNAFRSGKIDILVAT 256

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+ D + +I        +  +H++ GR GR     + + L             
Sbjct: 257 DVAARGIDIDDVTHVINYQTPDDPMTYVHRI-GRTGRAGHTGTAVTLV------------ 303

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
                   G+   +E LK       L + Q   P++    PEL+D+L
Sbjct: 304 --------GY---DELLKWTAINNELELGQPNPPQWFSTSPELYDTL 339


>gi|13399860|pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
           Hyperthermophile Methanococcus Jannaschii
 gi|13399861|pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
           Hyperthermophile Methanococcus Jannaschii
          Length = 367

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 132/337 (39%), Gaps = 41/337 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GG 322
           +RN  F  PT  Q   I   L D         + Q   GSGKT    I +   V    G 
Sbjct: 21  IRNKGFEKPTDIQXKVIPLFLNDEYNI-----VAQARTGSGKTASFAIPLIELVNENNGI 75

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  + I+    N  + +  I G      + KAL+      A+I++GT
Sbjct: 76  EAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGT 130

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D I    L L      I+DE         +K  +K      +L       R L+ 
Sbjct: 131 PGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEK------ILNACNKDKRILLF 184

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I  + +K  G        I  N     IE+  V ++E ++   +C  ++ K+ 
Sbjct: 185 SATXPREILNLAKKYXGDYSFIKAKINAN-----IEQSYVEVNENERFEALCRLLKNKE- 238

Query: 498 SNFRSVV--------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             F  +V        +   S           IHG +S   +E V+  FK    ++LIAT 
Sbjct: 239 --FYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD 296

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           V   GIDV D + +I  +      +  H++ GR GR 
Sbjct: 297 VXSRGIDVNDLNCVINYHLPQNPESYXHRI-GRTGRA 332


>gi|83953889|ref|ZP_00962610.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1]
 gi|83841834|gb|EAP81003.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1]
          Length = 554

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 162/399 (40%), Gaps = 54/399 (13%)

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           AGQ+ +   R    K   +  N+  K+ + I      +PT  Q  AI   L+       +
Sbjct: 9   AGQVYVRYHRTHMTKFSDL--NLNPKVLKAINEAGYETPTPIQAGAIPPALEGKD----V 62

Query: 295 LRILQGDVGSGKT------LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           L I Q   G+GKT      ++ L+A   A     +++++ P   LA Q  E    YT++ 
Sbjct: 63  LGIAQ--TGTGKTASFTLPMITLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHL 120

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQ 403
           ++   ++ G +    + K +++       ++I T     D  +  KLIL     ++VDE 
Sbjct: 121 KLTKALLIGGVSFGEQDKLIDK----GVDVLIATPGRLIDHFERGKLILSDVKIMVVDEA 176

Query: 404 HRF-------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAG 454
            R         +++  ++T        L  +AT  P    +T+  L   +  ++  +   
Sbjct: 177 DRMLDMGFIPDIERIFQMTPFTR--QTLFFSATMAPEIERITNTFLSAPERIEVARQATT 234

Query: 455 RKPIK--TVIIPINRID-EVIERLKV----VLSEGKK---AYWICPQIEEKKESNFRSVV 504
            + I+   ++   +R D E  E+ KV    + +EG K   A   C         N +  V
Sbjct: 235 SENIEQGVLMFKASRKDREATEKRKVLRALIDAEGDKCTNAIIFC---------NRKMDV 285

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +      + +    A IHG +    +   ++ F+NG  + L+A+ V   G+DV   S + 
Sbjct: 286 DTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNGDLRFLVASDVAARGLDVPSVSHVY 345

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
             +        +H++ GR GR       I++  P   KN
Sbjct: 346 NYDVPSHAEDYVHRI-GRTGRAGRDGKAIMICVPRDEKN 383


>gi|218676102|ref|YP_002394921.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324370|emb|CAV25741.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 523

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 128/293 (43%), Gaps = 41/293 (13%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHII 379
           +A+++ P   LA Q    + KY  N  +   ++ G +   PQ      ++++  G + ++
Sbjct: 75  RALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQ------MQKLRKG-SDVL 127

Query: 380 IGTHALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T         Q+++++ +L ++++DE  R      ++  +K       ++   P  R 
Sbjct: 128 VATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRK-------ILAFLPKKRQ 180

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            +L S    D  +   K     P++  + P N     +E+    + + KKA  +   I  
Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLI-- 238

Query: 495 KKESNFRSVV------------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            K++++R V+             RF  L E   +S A IHG  S   +   +++FK G  
Sbjct: 239 -KDNDWRQVLVFSKTKHGANKLARF--LEEQDITS-APIHGNKSQGARTKALENFKTGKV 294

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           ++L+AT +   GID+     ++  +  +     +H++ GR GR  E+   I L
Sbjct: 295 RVLVATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRI-GRTGRAGEVGKAISL 346


>gi|193664366|ref|XP_001952053.1| PREDICTED: eukaryotic initiation factor 4A-like [Acyrthosiphon
           pisum]
          Length = 411

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 136/316 (43%), Gaps = 51/316 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +       +    
Sbjct: 79  IAQAQSGTGKTATFSISILQQIDTSLNECQALILAPTRELAQQIQKVVIALGDFMKADCH 138

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-------QYYKL-ILVIVDEQHR 405
              G     + R  + ++  G +H+++GT     D I       Q+ K+ +L   DE   
Sbjct: 139 ACIGG---TNVRDDMRKLDTG-SHVVVGTPGRVYDMIARKSLRTQFIKIFVLDEADEMLS 194

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++K   K       V+L++AT +P  +       +D+S        R P++   I
Sbjct: 195 RGFKDQIKEVFKFLEEDIQVILLSAT-MPEDV-------LDVST----HFMRNPVR---I 239

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K       K  W    + +  ++          N R  VE        
Sbjct: 240 LVQKEELTLEGIKQFYINVTKEEWKFDTLCDLYDTLSITQAVIFCNTRRKVEWLTENMRL 299

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAE 569
            T +++ +HG M    +E +M  F++G+ ++LI T ++  GIDV   S++I      N E
Sbjct: 300 KTFTVSAMHGEMDQRQRELIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRE 359

Query: 570 HFGLAQLHQLRGRVGR 585
           ++    +H++ GR GR
Sbjct: 360 NY----IHRI-GRSGR 370


>gi|156976669|ref|YP_001447575.1| ATP-dependent RNA helicase [Vibrio harveyi ATCC BAA-1116]
 gi|156528263|gb|ABU73348.1| hypothetical protein VIBHAR_05443 [Vibrio harveyi ATCC BAA-1116]
          Length = 430

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 123/312 (39%), Gaps = 47/312 (15%)

Query: 302 VGSGKTLVALIAM--------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            G+GKT    + M         +A     +A+IMAP   LA+Q  + IK YT+ T + V 
Sbjct: 47  TGTGKTAAFSLPMIQQLLESGRSASRKTARALIMAPTRELAEQIADNIKAYTKYTDLSVA 106

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHR--- 405
            I G    + +  ALE    G   I++ T         Q ++    +  ++ DE  R   
Sbjct: 107 AIFGGRKMSSQVTALE----GGVDILVATPGRLEEHIEQGNVSVASIEFLVFDEADRILD 162

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             F    R  +    T P +++ +AT   +  +L             K   RKP +  + 
Sbjct: 163 MGFIHAVRKIMMDVDTDPQIMMFSATTSSQLNLLA------------KDILRKPKRIEVE 210

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV------ERFNSLHEHFTSS 517
             N   + I  +   + + +K   +   I  K   N++ V+      E  N + +     
Sbjct: 211 RANTTAQTIAHVLYPVDQERKTELLSELIGRK---NWKQVLVFVNYKETANDVVKELKLD 267

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                + HG  +   +   ++ FK G  ++++AT V   G+D+ D   ++  +       
Sbjct: 268 GIKAVVCHGDRAQSARRRALEEFKTGKARVMVATDVAARGLDIEDLPHVVNYDMPFLAED 327

Query: 575 QLHQLRGRVGRG 586
            +H++ GR GR 
Sbjct: 328 YVHRI-GRTGRA 338


>gi|148700136|gb|EDL32083.1| mCG141508, isoform CRA_b [Mus musculus]
          Length = 398

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +  ++I  + 
Sbjct: 112 AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSP 171

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                + +H+  GR GR      C+  Y P
Sbjct: 172 PQDVESYIHR-SGRTGRAGRTGICVCFYQP 200


>gi|150401787|ref|YP_001325553.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           aeolicus Nankai-3]
 gi|150014490|gb|ABR56941.1| DEAD/DEAH box helicase domain protein [Methanococcus aeolicus
           Nankai-3]
          Length = 529

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 141/336 (41%), Gaps = 42/336 (12%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   G+GKT    + +I      +   QA+I+ P   LA Q  + +     +  + +  +
Sbjct: 48  QAQTGTGKTAAFGLPIIEKLENTDKEVQAIILTPTRELALQVSDELNSLRGSKNLKIVAM 107

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQD----------SIQYYKLILVIVDEQHR 405
            G  P   + + L++      ++++GT     D          +I+Y+  +L   DE   
Sbjct: 108 YGGQPIQEQIRQLKK----GVNVVVGTPGRIMDHLKRGTLRLHTIKYF--VLDEADEMLD 161

Query: 406 FGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIKT 460
            G    ++   + T P   +LL +AT +PR ++  +   +G   +  +  +      ++ 
Sbjct: 162 MGFIDDIEDILRYTNPDKKMLLFSAT-LPRRIMGLAKRYMGKYKVISVKSENLTTDMVEQ 220

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           V   +   D+  E L  V+   K+ Y I  C     K  +    +  +  S   +F   +
Sbjct: 221 VYYEVRSSDK-FEALCRVIDINKEFYGIVFC-----KTRAEVNDIANKL-SAKGYFAEGL 273

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              HG ++   +E +++ FK    K+L+AT V   GIDV D + ++  +      A +H+
Sbjct: 274 ---HGDIAQNQREKILNRFKAKRTKILVATDVAARGIDVTDLTHVVNYDIPQNPEAYVHR 330

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           + GR GR  +  + I    P    + + RL  +K T
Sbjct: 331 I-GRTGRAGKRGTAITFVQP----DEFRRLKDIKRT 361


>gi|332716889|ref|YP_004444355.1| cold-shock DEAD box protein [Agrobacterium sp. H13-3]
 gi|325063574|gb|ADY67264.1| cold-shock DEAD box protein [Agrobacterium sp. H13-3]
          Length = 615

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 139/323 (43%), Gaps = 39/323 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG----GQA-----VIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   IA+A  + +     GQA     + +AP   LA Q    ++   + 
Sbjct: 41  LVSAQTGSGKTVAFGIALATTLLSENTRFGQASAPLALAIAPTRELAMQVKRELEWLYEF 100

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             + +    G M     R+ALER     AHII+GT     D I+   L L     V++DE
Sbjct: 101 AGVSIASCVGGMDIRSERRALER----GAHIIVGTPGRLCDHIKRGALDLSSLRAVVLDE 156

Query: 403 QHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
                  G ++ L+  L +       L+ +AT +PR++         +++  +K A R  
Sbjct: 157 ADEMLDLGFREDLEFILEESPDNRRTLMFSAT-VPRSIA-------KLAESYQKNAVR-- 206

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSLHEH 513
           I T       +D     L V  S+ + A     +  E + +    + R+ V    +   +
Sbjct: 207 IATASEQKQHVDIEYRALLVTGSDRENAIINALRFYEARNAIVFCSTRAAVNHLTARLNN 266

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S+  + G ++  ++   + + ++G  ++ +AT V   GID+    ++I  +      
Sbjct: 267 RGFSVVALSGELTQNERTHALQAMRDGRARVCVATDVAARGIDLPGLELVIHADLPTNSE 326

Query: 574 AQLHQLRGRVGR-GEEISSCILL 595
             LH+  GR GR G++  S I++
Sbjct: 327 TLLHR-SGRTGRAGQKGVSAIVV 348


>gi|312384402|gb|EFR29139.1| hypothetical protein AND_02178 [Anopheles darlingi]
          Length = 819

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 123/291 (42%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q  + +       +    
Sbjct: 228 IAQAQSGTGKTATFSIAILQLIDTSLNECQALILAPTRELASQIQKVVISLGDFLKAQCH 287

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G     + R  + R+  G  HI++GT     D I    L        +L   DE   
Sbjct: 288 ACIGG---TNVRDDMRRLEQG-CHIVVGTPGRVHDMISRNVLRTSNIKLFVLDEADEMLS 343

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + +++    +  +   V+L++AT +P           D+ ++++    R P+K   I
Sbjct: 344 RGFKDQIQDVFRKLPSDVQVILLSAT-MP----------ADVLEVSQHFM-RDPVK---I 388

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K    + K   W    + +  ++          N R  V++       
Sbjct: 389 LVKKEELTLEGIKQFYVDVKFEDWKLGTLCDLYDTLSITQAVIFCNTRRKVDQLTEEMTE 448

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            T +++ +HG M   D++ +M  F+ G+ ++LI T ++  GIDV   S++I
Sbjct: 449 KTFTVSAMHGDMEQRDRDLIMKQFRTGSSRVLITTDLLARGIDVQQVSLVI 499


>gi|224585906|ref|YP_002639705.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224470434|gb|ACN48264.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 732

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|206970279|ref|ZP_03231232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206734856|gb|EDZ52025.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
          Length = 481

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 133/328 (40%), Gaps = 50/328 (15%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK---PIKT 460
             F  Q    + +  T    +L +AT +P           D+ K++           IK 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPE----------DVEKLSRTYMNSPIHIEIKA 209

Query: 461 VIIPINRID----EVIERLK------VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             I  ++I+    EVIE  K      V   E   +  I  + +E  +  +R + +R N  
Sbjct: 210 AGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-KRANYP 268

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            +        IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +   
Sbjct: 269 CDK-------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPL 321

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP 598
              + +H+  GR GR       I    P
Sbjct: 322 EKESYVHRT-GRTGRAGNSGKAITFITP 348


>gi|206976742|ref|ZP_03237646.1| primosomal protein N` [Bacillus cereus H3081.97]
 gi|217961288|ref|YP_002339856.1| primosome assembly protein PriA [Bacillus cereus AH187]
 gi|222097313|ref|YP_002531370.1| primosome assembly protein pria [Bacillus cereus Q1]
 gi|206745052|gb|EDZ56455.1| primosomal protein N` [Bacillus cereus H3081.97]
 gi|217066666|gb|ACJ80916.1| primosomal protein N` [Bacillus cereus AH187]
 gi|221241371|gb|ACM14081.1| primosomal protein N` [Bacillus cereus Q1]
          Length = 801

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 262 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 321

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 322 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 377

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 378 P---FENLGIIIIDEEHESSYKQ 397


>gi|154248677|ref|YP_001419635.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154162762|gb|ABS69978.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 537

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 141/348 (40%), Gaps = 43/348 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI  +L     +  +L + Q   G+GKT    + M   +E G       + +I
Sbjct: 24  PTPIQAQAIPHVLA----RRDVLGLAQ--TGTGKTAAFTLPMLTLLEHGRARARMPRTLI 77

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   +Y +N ++ V ++ G +    +   L R       ++I T    
Sbjct: 78  LEPTRELAAQVEENFTRYGKNHKLNVALLIGGVSFGDQDSKLLR----GVDVLIATPGRL 133

Query: 387 QDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRT 434
            D ++  +L+L     +++DE  R         +++  KL            T  P  + 
Sbjct: 134 LDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFSATMPPEIQR 193

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSEGKKAYWICP 490
           LV   L +    ++++  +    +  +++   R D    EV+  L       +     C 
Sbjct: 194 LVSQFLSNPVRVEVSKPASTAATVTHMLVASGREDYDKREVLRELIRNCDGLQNGIIFC- 252

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  +  R V     SL +H  +++A+ HG M    +   +D F++G   LL+A+ V
Sbjct: 253 -------NRKRDVAVLHRSLQKHGFNAVAL-HGDMDQHARIKALDQFRSGEATLLVASDV 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
              G+D+   S +   +  H     +H++ GR GR G   ++  L+ H
Sbjct: 305 AARGLDIPAVSHVFNYDVPHHSEDYVHRV-GRTGRAGRAGTAYTLVTH 351


>gi|118479090|ref|YP_896241.1| primosome assembly protein PriA [Bacillus thuringiensis str. Al
           Hakam]
 gi|118418315|gb|ABK86734.1| replication restart DNA helicase PriA [Bacillus thuringiensis str.
           Al Hakam]
          Length = 801

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 262 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 321

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 322 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 377

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 378 P---FENLGIIIIDEEHESSYKQ 397


>gi|52141622|ref|YP_085209.1| primosome assembly protein PriA [Bacillus cereus E33L]
 gi|51975091|gb|AAU16641.1| primosomal protein N' [Bacillus cereus E33L]
          Length = 801

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 262 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 321

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 322 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 377

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 378 P---FENLGIIIIDEEHESSYKQ 397


>gi|52545677|emb|CAH10627.2| hypothetical protein [Homo sapiens]
          Length = 652

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 139/355 (39%), Gaps = 61/355 (17%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 132 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 189

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 245

Query: 401 DEQHRF---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G +             R  L   AT P  +   A    R     ++G++++
Sbjct: 246 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 305

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 306 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 347

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE--VGIDV 557
              R + L             IHG  S  +++ V++ F++G   +LIAT V    +G+DV
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLGLDV 407

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            D   +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 408 EDVKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 461


>gi|15642673|ref|NP_232306.1| primosome assembly protein PriA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121590912|ref|ZP_01678234.1| primosomal protein N` [Vibrio cholerae 2740-80]
 gi|121727584|ref|ZP_01680692.1| primosomal protein N` [Vibrio cholerae V52]
 gi|147674045|ref|YP_001218167.1| primosome assembly protein PriA [Vibrio cholerae O395]
 gi|227082794|ref|YP_002811345.1| primosomal protein N' [Vibrio cholerae M66-2]
 gi|229507274|ref|ZP_04396779.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae BX 330286]
 gi|229509803|ref|ZP_04399284.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae B33]
 gi|229516927|ref|ZP_04406373.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae RC9]
 gi|229606780|ref|YP_002877428.1| primosome assembly protein PriA [Vibrio cholerae MJ-1236]
 gi|254851215|ref|ZP_05240565.1| primosome assembly protein PriA [Vibrio cholerae MO10]
 gi|255744361|ref|ZP_05418313.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholera CIRS 101]
 gi|262158529|ref|ZP_06029644.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae INDRE 91/1]
 gi|262170077|ref|ZP_06037766.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae RC27]
 gi|298500504|ref|ZP_07010308.1| primosome assembly protein PriA [Vibrio cholerae MAK 757]
 gi|9657272|gb|AAF95819.1| primosomal protein N` [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547234|gb|EAX57358.1| primosomal protein N` [Vibrio cholerae 2740-80]
 gi|121630075|gb|EAX62480.1| primosomal protein N` [Vibrio cholerae V52]
 gi|146315928|gb|ABQ20467.1| primosomal protein N` [Vibrio cholerae O395]
 gi|227010682|gb|ACP06894.1| primosomal protein N' [Vibrio cholerae M66-2]
 gi|227014566|gb|ACP10776.1| primosomal protein N' [Vibrio cholerae O395]
 gi|229345990|gb|EEO10962.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae RC9]
 gi|229353277|gb|EEO18216.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae B33]
 gi|229354779|gb|EEO19700.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae BX 330286]
 gi|229369435|gb|ACQ59858.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae MJ-1236]
 gi|254846920|gb|EET25334.1| primosome assembly protein PriA [Vibrio cholerae MO10]
 gi|255737886|gb|EET93279.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholera CIRS 101]
 gi|262021485|gb|EEY40197.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae RC27]
 gi|262029690|gb|EEY48339.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae INDRE 91/1]
 gi|297540673|gb|EFH76730.1| primosome assembly protein PriA [Vibrio cholerae MAK 757]
          Length = 734

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    SQ+     +L+G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 199 PRLNQEQAIA-IAAVNSQQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 258 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 312 FAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 372 KYHHLQLTQRAGNALPTRN 390


>gi|326474132|gb|EGD98141.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           tonsurans CBS 112818]
          Length = 809

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 130/332 (39%), Gaps = 57/332 (17%)

Query: 302 VGSGKTLVALIAMAAAVEA-------------GGQAVIMAPIGILAQQ-HYEFIKKYTQN 347
            GSGKT   L+ +   + +             G  A+I+AP   LAQQ   E +K     
Sbjct: 415 TGSGKTAAFLLPLLVYISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPL 474

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHG---QAHIIIGTHALFQDSIQYYKLIL-----VI 399
              +V I+ G+        +LE  A+     A III T     D I+   L+L     VI
Sbjct: 475 NFNVVSIVGGH--------SLEEQAYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVI 526

Query: 400 VDEQHR----------------FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSL 440
           +DE  R                  V      T++A     +        R   T++ T+ 
Sbjct: 527 MDEADRMIDLGFEEPVNKILDALPVSNEKPDTEEAENAQAMSQHIGGKDRYRQTMMYTAT 586

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
               + +I  K   R  I T+      +D V +R++ V  E K+   +   +  ++    
Sbjct: 587 MPSAVERIARKYLRRPAIVTIGNIGEAVDTVEQRVEFVAGEDKRKKRLAEILTSREYRPP 646

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N +   +      +H   S   +HG  +   +E+ + S +NG+  +L+AT +   
Sbjct: 647 IIVFVNIKRNCDAVARDIKHMGFSAVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGR 706

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           GIDV D S+++  N      +  H++ GR GR
Sbjct: 707 GIDVPDVSLVVNFNMATNIESYTHRI-GRTGR 737


>gi|149180840|ref|ZP_01859342.1| probable ATP-dependent RNA helicase [Bacillus sp. SG-1]
 gi|148851359|gb|EDL65507.1| probable ATP-dependent RNA helicase [Bacillus sp. SG-1]
          Length = 858

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 122/299 (40%), Gaps = 59/299 (19%)

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           G+  +GKT  AL +M  A    G  + +AP+ +LA + Y+ +     N  +   + TG  
Sbjct: 380 GETNTGKTHQALESMREA----GSGIYLAPLRLLALEVYDRL----NNEGVPCNLKTGEE 431

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR----LKLT 415
                    E+   G  H+       ++      +  +V++DE      + R     K  
Sbjct: 432 ---------EKTVPGANHVACTVEMFYEKE----EFDVVVIDEAQMMADKDRGFSWYKAI 478

Query: 416 QKATAPHVLLMTATPI-PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            KA A  V ++ +  + P  L L    D++I++               IP+      +E 
Sbjct: 479 TKARAREVHIIGSRNVKPMLLGLLENCDVEINEYNRD-----------IPLQ-----VEE 522

Query: 475 LKVVLSEGKKA-YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            +  L   K+    +C         + R V+E  + L  +   S+++I+G M    ++  
Sbjct: 523 REFSLKHAKRGDALVC--------FSRRRVLETASKLQNN-GHSVSMIYGSMPPETRKKQ 573

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-------AQLHQLRGRVGR 585
           M  F  G  ++++AT  I +G+++    I+ +EN +  G         ++ Q+ GR GR
Sbjct: 574 MQRFIKGETRVIVATDAIGMGLNLPIRRIVFLENDKFDGTRRRILTSQEVKQIAGRAGR 632


>gi|92113448|ref|YP_573376.1| ATP-dependent DNA helicase RecQ [Chromohalobacter salexigens DSM
           3043]
 gi|91796538|gb|ABE58677.1| ATP-dependent DNA helicase, RecQ-like protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 664

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 125/321 (38%), Gaps = 51/321 (15%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            GSGK+L   +    A+      ++++P+  L Q   EF++++     I    +     +
Sbjct: 40  TGSGKSLCYQLP---ALHLPHLTLVVSPLLALMQDQLEFLRRHG----IAAASLDSRQSR 92

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQR-- 411
                 ++ +  G   I++ +     +  F+  +Q   + L++ DE H    +G   R  
Sbjct: 93  EEASAVMDGVRRGDIRILMISVERLKNERFRAFLQRVPVSLLVADEAHCLSEWGHNFRPD 152

Query: 412 -LKLT--QKATA-PHVLLMTATPIPRTLVLTSLGD---IDISKITEKPAGRKPIKTVIIP 464
            LKL   Q+  A P  LL+TAT  PR  V+  + D   ID   +      R  +   + P
Sbjct: 153 YLKLPAYQREFAIPQALLLTATATPR--VIDDMRDSFAIDARDVAATGFYRPNLDLQVQP 210

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSI 518
                   ER    L E     W+ P++              +   E+  +         
Sbjct: 211 T-----ATERRPRALVE-----WLGPRLAASPPQPSIVYVTLQKTAEQMAAYLGKAGLEA 260

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ--- 575
              H  +    ++++  +F NG    ++AT    +GID  D     I N  HF L +   
Sbjct: 261 RAYHAGLDGETRDALQQAFMNGEINCIVATIAFGMGIDKAD-----IRNVVHFDLPKSIE 315

Query: 576 -LHQLRGRVGRGEEISSCILL 595
              Q  GR GR  + SSC++L
Sbjct: 316 NYSQEIGRAGRDGQPSSCLML 336


>gi|332673868|gb|AEE70685.1| DNA replication factor Y [Helicobacter pylori 83]
          Length = 619

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + A+A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHPA-SLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      + + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKRVFKEN----LGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 219 LKELGLIIVDEEHDFS 234


>gi|317177817|dbj|BAJ55606.1| primosome assembly protein PriA [Helicobacter pylori F16]
          Length = 619

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + ++A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHSA-SLLFGDTGSGKTEIYMHSIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      + + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKRVFKEN----LGLWHSKLSQTQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 219 LKELGLIIVDEEHDFS 234


>gi|303315651|ref|XP_003067830.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240107506|gb|EER25685.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320034056|gb|EFW16002.1| ATP-dependent RNA helicase DBP2 [Coccidioides posadasii str.
           Silveira]
          Length = 545

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 72/346 (20%), Positives = 141/346 (40%), Gaps = 51/346 (14%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +++AP   LA Q    I K+ ++++I  
Sbjct: 173 ETGSGKTLTYCLPAIVHINAQPLLGPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRN 232

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P+  + + L R       + I T     D ++  K  L     +++DE  R  
Sbjct: 233 TCVYGGVPRGPQIRDLSR----GVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRML 288

Query: 407 --GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
             G +             R      AT P  +   A       +   +G  D+S   +IT
Sbjct: 289 DMGFEPQIRKIIGQIRPDRQTCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRIT 348

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +       I  ++    + D +I  L+ ++ + K    I    +   +      + RF  
Sbjct: 349 Q-------IVEIVSDFEKRDRMINHLERIMDDKKSKILIFTGTKRVADD-----ITRF-- 394

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D + ++  +  
Sbjct: 395 LRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYP 453

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +     +H++ GR GR     + I L+    +K +   +++L  ++
Sbjct: 454 NNSEDYVHRI-GRTGRAGAKGTAITLFTTDNAKQARDLVNILTESK 498


>gi|255728265|ref|XP_002549058.1| hypothetical protein CTRG_03355 [Candida tropicalis MYA-3404]
 gi|240133374|gb|EER32930.1| hypothetical protein CTRG_03355 [Candida tropicalis MYA-3404]
          Length = 531

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/293 (19%), Positives = 120/293 (40%), Gaps = 44/293 (15%)

Query: 300 GDVGSGKTLV----ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            + GSGKT      A+ ++          + ++P   LA Q Y+ + + T +T +    +
Sbjct: 164 AETGSGKTFAFGVPAINSIITTKNKNLSVLCISPTRELALQIYDNLIELTNDTNVKCVAV 223

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---- 406
            G + +  + + ++      A++++ T     D     +I    +  +++DE  R     
Sbjct: 224 YGGVSKDEQIQKIK-----TANVVVATPGRLVDLINDGAINLSNIDYLVLDEADRMLEKG 278

Query: 407 ------------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
                         + R  L   AT P  +   A    ++ +  ++GD D      + + 
Sbjct: 279 FEEDIKRIISSTNAEDRQTLMFTATWPKEVRELANNFMKSPIKVTVGDRD------ELSA 332

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVERFNSLH 511
            K I  ++  +N+ D+  + + ++       Y       E K    + ++    R  +L 
Sbjct: 333 NKRITQIVEVVNKFDKEKKLINLL-----HKYQGNNNDSENKILVFALYKKEASRIENLL 387

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +     +A IHG +S   +   ++SFK+G C LL+AT V   G+D+ +  ++I
Sbjct: 388 KRNRFQVAAIHGDLSQQQRTQALNSFKSGQCNLLLATDVAARGLDIPNVKVVI 440


>gi|150398124|ref|YP_001328591.1| primosome assembly protein PriA [Sinorhizobium medicae WSM419]
 gi|150029639|gb|ABR61756.1| primosomal protein N' [Sinorhizobium medicae WSM419]
          Length = 734

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 9/130 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q  A  D+L  + ++   + ++ G  GSGKT V   A+AA + AG Q +I+ P I + A 
Sbjct: 206 QRQAAVDLLAAVEERKFSVSLIDGITGSGKTEVYFEAIAATLRAGRQVLILLPEIALTAS 265

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               F++++             ++    R K   ++  GQ  ++ G   ALF   + + +
Sbjct: 266 ----FLERFQDRFGAKPAEWHSDLAPRTREKVWRQVTTGQVRVVAGARSALF---LPFEE 318

Query: 395 LILVIVDEQH 404
           L L+IVDE+H
Sbjct: 319 LGLIIVDEEH 328


>gi|332849248|ref|XP_511724.3| PREDICTED: eukaryotic initiation factor 4A-III [Pan troglodytes]
          Length = 411

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 61  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 114

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 115 TRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 167

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   P   V+L++AT     L 
Sbjct: 168 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 227

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEG 482
           +T+    D  +I  K      + IK   + + R +              I +  +  +  
Sbjct: 228 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 287

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 288 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 328

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 329 RVLISTDVWARGLDVPQVSLIINYDLPNNRELSIHRI-GRSGR 370


>gi|324327766|gb|ADY23026.1| primosome assembly protein PriA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 801

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 262 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 321

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 322 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 377

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 378 P---FENLGIIIIDEEHESSYKQ 397


>gi|293380310|ref|ZP_06626384.1| primosomal protein N' [Lactobacillus crispatus 214-1]
 gi|290923125|gb|EFE00054.1| primosomal protein N' [Lactobacillus crispatus 214-1]
          Length = 799

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 13/138 (9%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q+ A+  I Q + Q+     +L+G  GSGKT V L A++ A++ G  A+++ P I +  Q
Sbjct: 267 QQGALNQITQAIEQRQAETFLLEGITGSGKTEVYLHAISKALKQGRNALMLVPEISLTPQ 326

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ--DSIQY 392
              +   ++ Q     V ++   + +  +     RI  G+  +++G   A+F   D+I  
Sbjct: 327 MVRQVKARFGQE----VAVLHSALSEGEKYDEWRRIRRGETKVVVGARSAVFAPLDNIG- 381

Query: 393 YKLILVIVDEQHRFGVQQ 410
               L+++DE+H    +Q
Sbjct: 382 ----LIVIDEEHESSYKQ 395


>gi|229013052|ref|ZP_04170217.1| Primosomal protein N' [Bacillus mycoides DSM 2048]
 gi|229134676|ref|ZP_04263485.1| Primosomal protein N' [Bacillus cereus BDRD-ST196]
 gi|229168608|ref|ZP_04296331.1| Primosomal protein N' [Bacillus cereus AH621]
 gi|228615014|gb|EEK72116.1| Primosomal protein N' [Bacillus cereus AH621]
 gi|228648722|gb|EEL04748.1| Primosomal protein N' [Bacillus cereus BDRD-ST196]
 gi|228748306|gb|EEL98166.1| Primosomal protein N' [Bacillus mycoides DSM 2048]
          Length = 771

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 232 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 291

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++     ++   ++        RK L +    +  +++G   A+F 
Sbjct: 292 EIALTPQMVDRFKGRFGSQVAVLHSALSVGEKYDEWRKILRK----EVKVVVGARSAIFA 347

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 348 P---FENLGIIIIDEEHESSYKQ 367


>gi|254482117|ref|ZP_05095359.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037807|gb|EEB78472.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 459

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 138/337 (40%), Gaps = 72/337 (21%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK---YTQNTQI 350
           I Q   GSGKT    + L+      + G QA+++ P   LA Q    I++   Y QN ++
Sbjct: 45  IAQAKTGSGKTAAFSLPLLDKLNPRDFGTQALVLCPTRELATQVSGEIRRLARYRQNIKV 104

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +   + G      +  +LE   HG AHI++GT     D ++   L L     +++DE  R
Sbjct: 105 VT--LCGGQSIGPQIGSLE---HG-AHIVVGTPGRISDHLRKKTLNLTRVDTLVLDEADR 158

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
                 +   +  ++    ++  TP  R TL+ ++    DI  ++ +   +K  + + + 
Sbjct: 159 M---LEMGFVEDISS----IIEQTPAARQTLLFSATYPDDIEALSAR--FQKQPERISVE 209

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII--- 521
               D+ I+          + +++C     +K +    +V   N    HF    A++   
Sbjct: 210 TMHNDQQID----------QQFFVC-----QKSARLDGLVTLLN----HFAPQTAVVFCN 250

Query: 522 ----------------------HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                                 HG M   D++ V+  F+  +C +L+AT V   G+D+ D
Sbjct: 251 TKQLVRDVTAHLDESGIRALALHGDMEQRDRDQVLIQFRQQSCSVLVATDVAARGLDIDD 310

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             +++           +H++ GR GR  +    + L+
Sbjct: 311 LPVVVNFELPRETEVYVHRV-GRTGRAGKAGLALSLF 346


>gi|168237723|ref|ZP_02662781.1| putative primosomal protein N' [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737086|ref|YP_002117016.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712588|gb|ACF91809.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289431|gb|EDY28796.1| putative primosomal protein N' [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 732

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|153800715|ref|ZP_01955301.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|227812335|ref|YP_002812345.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229522328|ref|ZP_04411744.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|298499563|ref|ZP_07009369.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
 gi|124123690|gb|EAY42433.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|227011477|gb|ACP07688.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229340313|gb|EEO05319.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|297541544|gb|EFH77595.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
          Length = 422

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 151/391 (38%), Gaps = 50/391 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQG-DVGSGKTLV-------ALIAMAAAVEAGGQ 323
           +PT  Q+ AI  +LQ          +L G   G+GKT           I      EA  +
Sbjct: 28  NPTPIQQQAIPHVLQGKD-------VLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSK 80

Query: 324 ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I
Sbjct: 81  EIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHL----RGGVDILI 136

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D      L L     +++DE  R      +   Q+      +L   +P+ +TL
Sbjct: 137 ATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR------VLRRLSPLRQTL 190

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             ++  D  I  +  +   R PI+  + P N   E ++++   + + +K   +   I  K
Sbjct: 191 FFSATFDSKIKAVAYRIM-RDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSK 249

Query: 496 KESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                  F    +  ++L E           I+G  S   ++  +D FK G  + LIAT 
Sbjct: 250 NWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATD 309

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYH---PPLSK--- 602
           V   G+D+     ++  +        +H++ GR GR       I LL H   P L     
Sbjct: 310 VAARGLDIAQLEQVVNYDMPFKAEDYVHRI-GRTGRAGLAGLAISLLSHDEQPQLEAIER 368

Query: 603 --NSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
             N+      LK  E   ++ EE+  +R  G
Sbjct: 369 LLNTRLPQEWLKGFEPSPVVHEENSPRRSAG 399


>gi|153214000|ref|ZP_01949193.1| primosomal protein N` [Vibrio cholerae 1587]
 gi|153829451|ref|ZP_01982118.1| primosomal protein N` [Vibrio cholerae 623-39]
 gi|124115570|gb|EAY34390.1| primosomal protein N` [Vibrio cholerae 1587]
 gi|148875034|gb|EDL73169.1| primosomal protein N` [Vibrio cholerae 623-39]
          Length = 734

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    SQ+     +L+G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 199 PKLNQEQAIA-IAAVNSQQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 258 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 312 FAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 372 KYHHLQLTQRAGNALPTRN 390


>gi|160880140|ref|YP_001559108.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160428806|gb|ABX42369.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 514

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 144/312 (46%), Gaps = 35/312 (11%)

Query: 302 VGSGKT----LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            G+GKT    L  L +++    +G +A+I+ P   LA Q YE  + + + T +   +I G
Sbjct: 47  TGTGKTAAFALPILQSLSKGEGSGVRALIITPTRELAIQIYESFECFGKYTSLKQSVIYG 106

Query: 358 NMPQAHRRKALER------IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG---- 407
            + Q+ +  +L+          G+ + +IG   +  D+I+ +  +L   D+    G    
Sbjct: 107 GVGQSLQVNSLKAGIDILIATPGRLNDLIGQGYITLDAIEMF--VLDEADQMLDMGFLND 164

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           +++ +KL  K      LL +AT +P+   +L    L + +I KI+   +    I+  +  
Sbjct: 165 IKKVIKLLPKTR--QTLLFSAT-MPKEIESLATNLLNNPEIIKISPVTSTVDSIEQSVYF 221

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
           ++R+++ I  L  ++ E K +  +   +  K +     V ++ N       +    IHG 
Sbjct: 222 VDRLNK-ISLLTSLIKEHKMSRVL---VFTKTKHGADRVADKLNKAKVKTQA----IHGG 273

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
                +++ +  FK G  K+L+AT +   GID+ + S ++  +  +     +H++ GR G
Sbjct: 274 KGQNARQTALSDFKEGKIKVLVATDIAARGIDISELSYVVNYDIPNQAEIYIHRI-GRTG 332

Query: 585 R----GEEISSC 592
           R    G  I+ C
Sbjct: 333 RAGLGGNAINLC 344


>gi|73969111|ref|XP_850120.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 2 [Canis
           familiaris]
          Length = 652

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 139/355 (39%), Gaps = 61/355 (17%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 132 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 189

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 245

Query: 401 DEQHRF---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G +             R  L   AT P  +   A    R     ++G++++
Sbjct: 246 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 305

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 306 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 347

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE--VGIDV 557
              R + L             IHG  S  +++ V++ F++G   +LIAT V    +G+DV
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLGLDV 407

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            D   +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 408 EDVKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 461


>gi|73964736|ref|XP_533130.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48
           isoform 1 [Canis familiaris]
          Length = 411

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 61  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 114

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 115 TRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 167

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   P   V+L++AT     L 
Sbjct: 168 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 227

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEG 482
           +T+    D  +I  K      + IK   + + R +              I +  +  +  
Sbjct: 228 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 287

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 288 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 328

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 329 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 370


>gi|62182554|ref|YP_218971.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62130187|gb|AAX67890.1| primosomal protein N' (= factor Y) directs replication fork
           assembly at D-loops [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322717052|gb|EFZ08623.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 732

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|83942648|ref|ZP_00955109.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36]
 gi|83846741|gb|EAP84617.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36]
          Length = 559

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 162/399 (40%), Gaps = 54/399 (13%)

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           AGQ+ +   R    K   +  N+  K+ + I      +PT  Q  AI   L+       +
Sbjct: 9   AGQVYVRYHRTHMTKFSDL--NLNPKVLKAIDEAGYETPTPIQAGAIPPALEGKD----V 62

Query: 295 LRILQGDVGSGKT------LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           L I Q   G+GKT      ++ L+A   A     +++++ P   LA Q  E    YT++ 
Sbjct: 63  LGIAQ--TGTGKTASFTLPMITLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHL 120

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQ 403
           ++   ++ G +    + K +++       ++I T     D  +  KLIL     ++VDE 
Sbjct: 121 KLTKALLIGGVSFGEQDKLIDK----GVDVLIATPGRLIDHFERGKLILSDVKIMVVDEA 176

Query: 404 HRF-------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAG 454
            R         +++  ++T        L  +AT  P    +T+  L   +  ++  +   
Sbjct: 177 DRMLDMGFIPDIERIFQMTPFTR--QTLFFSATMAPEIERITNTFLSAPERIEVARQATT 234

Query: 455 RKPIK--TVIIPINRID-EVIERLKV----VLSEGKK---AYWICPQIEEKKESNFRSVV 504
            + I+   ++   +R D E  E+ KV    + +EG K   A   C         N +  V
Sbjct: 235 SENIEQGVLMFKASRKDREATEKRKVLRALIDAEGDKCTNAIIFC---------NRKMDV 285

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +      + +    A IHG +    +   ++ F+NG  + L+A+ V   G+DV   S + 
Sbjct: 286 DTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNGDLRFLVASDVAARGLDVPSVSHVY 345

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
             +        +H++ GR GR       I++  P   KN
Sbjct: 346 NYDVPSHAEDYVHRI-GRTGRAGRDGKAIMICVPRDEKN 383


>gi|317180133|dbj|BAJ57919.1| primosome assembly protein PriA [Helicobacter pylori F32]
          Length = 620

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + ++A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHSA-SLLFGDTGSGKTEIYMHSIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      + + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKRVFKEN----LGLWHSKLSQTQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 219 LKELGLIIVDEEHDFS 234


>gi|297686801|ref|XP_002820927.1| PREDICTED: nucleolar RNA helicase 2-like [Pongo abelii]
          Length = 783

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 133/340 (39%), Gaps = 63/340 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---------GQAVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   +             Q +++AP   LA Q  +     T+ 
Sbjct: 227 IAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITK- 285

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +    ER+ +G   I++GT    +D IQ  KL L     V++DE
Sbjct: 286 -KLSVACFYGGTPYGGQ---FERMRNG-IDILVGTPGRIKDHIQNGKLDLTKLKHVVLDE 340

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTAT------PIPRTLVLTSLGDIDIS 446
             +         V++ L +  K  +   P  LL +AT       + +  + ++   +D+ 
Sbjct: 341 VDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDL- 399

Query: 447 KITEKPAGRKPIKTVIIP---------INRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                  G+K  KT I             R   + + ++V      +    C   +E +E
Sbjct: 400 ------IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQE 453

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +  S +++              +HG +    +E  +  F+NG+  +L+AT V   G+D+
Sbjct: 454 LSQNSAIKQ----------DAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDI 503

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +  ++I  +      + +H+  GR GR      CI  Y 
Sbjct: 504 PEVDLVIQSSPPKDVESYIHR-SGRTGRAGRTGVCICFYQ 542


>gi|242373863|ref|ZP_04819437.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
 gi|242348417|gb|EES40019.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
          Length = 447

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 162/374 (43%), Gaps = 64/374 (17%)

Query: 270 PFSPTKSQESAIKDILQDMS------QKNRML-RILQG-------DVGSGKTLVALIAMA 315
           PF      ES IK + QD++       +NR++ RIL+G         G+GK+   L+ + 
Sbjct: 5   PFEHFNLDESLIKAV-QDLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHSFLLPLM 63

Query: 316 AAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERI 371
             ++      QA+++AP   LAQQ ++     +Q  Q + V++  G       ++   R 
Sbjct: 64  QKIDVDVQEPQAIVVAPTRELAQQLFQAASHLSQFKQDVSVKLFIGGTDIEKDKQRCNR- 122

Query: 372 AHGQAHIIIGTHALFQDSIQ--YYKLIL---VIVDEQH---RFGVQQRL-----KLTQKA 418
              Q  +IIGT     D  Q  Y    L   +IVDE       G+ + +     +L  +A
Sbjct: 123 ---QPQLIIGTPTRINDLAQGGYLHAHLASNLIVDEADLMIDLGLIEDVDYIAARLDDEA 179

Query: 419 TAPHVLLMTATPIPRTL---VLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVI 472
              H+ + +AT IP++L   +   L   +  ++  K   +K I+  +IP     +ID+ +
Sbjct: 180 ---HIAVFSAT-IPKSLQPFLNKYLSQPEFVEVDSKSQNKKNIEFYLIPTKGTAKIDKTL 235

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
             + ++        ++C      +E+      E  NSL+      + +IHG ++  +++ 
Sbjct: 236 SLIDMLNP------YLCIIFCNSREN----ANELANSLNNEGIK-VGMIHGGLTPRERKQ 284

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIII---IENAEHFGLAQLHQLRGRVGRGEEI 589
            M   +N   + +IA+ +   GID+   S +I   + N   F   ++    GR GRG   
Sbjct: 285 QMKRIRNLDFQYVIASDLASRGIDIEGVSHVINFDVPNDIDFFTHRV----GRTGRGNYK 340

Query: 590 SSCILLYHPPLSKN 603
              I LY P    N
Sbjct: 341 GVAITLYSPDEEHN 354


>gi|241950191|ref|XP_002417818.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
 gi|223641156|emb|CAX45533.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
          Length = 563

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 11/139 (7%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++ +IH   +   +E V+  FKNG   +LI T V+  G+D    +++I  +      A +
Sbjct: 398 NVDVIHAERTPKQREEVIKRFKNGDIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYV 457

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT--EDGFLIAEEDL--------K 626
           H++ GR GRG +    +  +     K     L+V+K +   DG+    ED+        K
Sbjct: 458 HRI-GRTGRGGKSGKAVTFFTKEDDKAIKPILNVMKQSGCNDGYSQWMEDMGKLSKKEKK 516

Query: 627 QRKEGEILGIKQSGMPKFL 645
           Q K  EI   K S +PK +
Sbjct: 517 QIKTHEIQRKKISTVPKVI 535


>gi|207093042|ref|ZP_03240829.1| primosome assembly protein PriA [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 327

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + A+A  +E    A+++ P I +
Sbjct: 14  SQTQTNALKEL-----QKHSA-SLLFGDTGSGKTEIYMHAIAQILEQKKSALLLVPEIAL 67

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      K + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 68  TPQMQQRLKKVFKEN----LGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRSALF---LP 120

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 121 LKELGLIIVDEEHDFS 136


>gi|198244145|ref|YP_002218021.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197938661|gb|ACH75994.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
          Length = 732

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|197263443|ref|ZP_03163517.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197241698|gb|EDY24318.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 732

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|157147267|ref|YP_001454586.1| primosome assembly protein PriA [Citrobacter koseri ATCC BAA-895]
 gi|157084472|gb|ABV14150.1| hypothetical protein CKO_03059 [Citrobacter koseri ATCC BAA-895]
          Length = 732

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|156064127|ref|XP_001597985.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|160380609|sp|A7E449|DBP2_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp2
 gi|154690933|gb|EDN90671.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 572

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 145/342 (42%), Gaps = 51/342 (14%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +++AP   LA Q  + I K+ ++++I  
Sbjct: 194 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRN 253

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G +P+  +   +  +A G   + I T     D I+  K  L     +++DE  R  
Sbjct: 254 TCVYGGVPKGGQ---IRDLAKG-VEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRML 309

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
              F  Q R  L Q           AT P  +   A+      +  ++G +++S   +IT
Sbjct: 310 DMGFEPQIRKILGQIRPDRQTCMWSATWPKEVRALASDYLNDFIQVNIGSLELSANHRIT 369

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +       I  V+    + D++ + L+ ++ +      I    +   +      + RF  
Sbjct: 370 Q-------IVEVVSEFEKRDKMTKHLEKIMEDKDNKILIFTGTKRVADD-----ITRF-- 415

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +    +++I HG     +++ V++ FK G   +++AT V   GIDV + + +   +  
Sbjct: 416 LRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYP 474

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           +     +H++ GR GR  +  + I L+     K +   ++VL
Sbjct: 475 NNSEDYIHRI-GRTGRAGQKGTAITLFTTDNQKQARDLVNVL 515


>gi|42782960|ref|NP_980207.1| primosome assembly protein PriA [Bacillus cereus ATCC 10987]
 gi|42738887|gb|AAS42815.1| primosomal protein N` [Bacillus cereus ATCC 10987]
          Length = 801

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 262 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 321

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 322 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 377

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 378 P---FENLGIIIIDEEHESSYKQ 397


>gi|30263871|ref|NP_846248.1| primosome assembly protein PriA [Bacillus anthracis str. Ames]
 gi|47529298|ref|YP_020647.1| primosome assembly protein PriA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186718|ref|YP_029970.1| primosome assembly protein PriA [Bacillus anthracis str. Sterne]
 gi|165872266|ref|ZP_02216903.1| primosomal protein N` [Bacillus anthracis str. A0488]
 gi|167636427|ref|ZP_02394726.1| primosomal protein N` [Bacillus anthracis str. A0442]
 gi|167641150|ref|ZP_02399405.1| primosomal protein N` [Bacillus anthracis str. A0193]
 gi|170688846|ref|ZP_02880049.1| primosomal protein N` [Bacillus anthracis str. A0465]
 gi|170708809|ref|ZP_02899245.1| primosomal protein N` [Bacillus anthracis str. A0389]
 gi|177654898|ref|ZP_02936615.1| primosomal protein N` [Bacillus anthracis str. A0174]
 gi|190565936|ref|ZP_03018855.1| primosomal protein N` [Bacillus anthracis Tsiankovskii-I]
 gi|227813224|ref|YP_002813233.1| primosomal protein N' [Bacillus anthracis str. CDC 684]
 gi|229602838|ref|YP_002868105.1| primosomal protein N' [Bacillus anthracis str. A0248]
 gi|254683423|ref|ZP_05147283.1| primosome assembly protein PriA [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721400|ref|ZP_05183189.1| primosome assembly protein PriA [Bacillus anthracis str. A1055]
 gi|254735907|ref|ZP_05193613.1| primosome assembly protein PriA [Bacillus anthracis str. Western
           North America USA6153]
 gi|254739845|ref|ZP_05197538.1| primosome assembly protein PriA [Bacillus anthracis str. Kruger B]
 gi|254751035|ref|ZP_05203074.1| primosome assembly protein PriA [Bacillus anthracis str. Vollum]
 gi|254756700|ref|ZP_05208729.1| primosome assembly protein PriA [Bacillus anthracis str. Australia
           94]
 gi|30258515|gb|AAP27734.1| primosomal protein N' [Bacillus anthracis str. Ames]
 gi|47504446|gb|AAT33122.1| primosomal protein N` [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180645|gb|AAT56021.1| primosomal protein N` [Bacillus anthracis str. Sterne]
 gi|164711942|gb|EDR17482.1| primosomal protein N` [Bacillus anthracis str. A0488]
 gi|167510930|gb|EDR86321.1| primosomal protein N` [Bacillus anthracis str. A0193]
 gi|167528169|gb|EDR90956.1| primosomal protein N` [Bacillus anthracis str. A0442]
 gi|170126294|gb|EDS95185.1| primosomal protein N` [Bacillus anthracis str. A0389]
 gi|170667201|gb|EDT17961.1| primosomal protein N` [Bacillus anthracis str. A0465]
 gi|172080409|gb|EDT65496.1| primosomal protein N` [Bacillus anthracis str. A0174]
 gi|190562855|gb|EDV16821.1| primosomal protein N` [Bacillus anthracis Tsiankovskii-I]
 gi|227003719|gb|ACP13462.1| primosomal protein N' [Bacillus anthracis str. CDC 684]
 gi|229267246|gb|ACQ48883.1| primosomal protein N' [Bacillus anthracis str. A0248]
          Length = 801

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 262 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 321

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 322 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 377

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 378 P---FENLGIIIIDEEHESSYKQ 397


>gi|170717269|ref|YP_001784384.1| primosome assembly protein PriA [Haemophilus somnus 2336]
 gi|168825398|gb|ACA30769.1| primosomal protein N' [Haemophilus somnus 2336]
          Length = 730

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 74/138 (53%), Gaps = 10/138 (7%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-AVIMAPIGILA 334
           +QE A+  + Q + Q   +  +L+G  GSGKT + L  +   ++   Q  V+++ IG+  
Sbjct: 202 NQEQALA-LSQLIFQSGFICWLLEGVTGSGKTEIYLQFIEEILQQEKQILVLVSEIGLTP 260

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYY 393
           Q     ++++     I ++++  N+    R K  +R  +G++ +IIGT  ALF     + 
Sbjct: 261 QT----VQRFQARFNIEIDVLHSNLNDNQRLKVWQRSKNGESAVIIGTRSALF---TPFK 313

Query: 394 KLILVIVDEQHRFGVQQR 411
           +L L+IVDE+H    +Q+
Sbjct: 314 QLGLIIVDEEHDLSFKQQ 331


>gi|65321195|ref|ZP_00394154.1| COG1198: Primosomal protein N' (replication factor Y) - superfamily
           II helicase [Bacillus anthracis str. A2012]
          Length = 801

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 262 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 321

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 322 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 377

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 378 P---FENLGIIIIDEEHESSYKQ 397


>gi|259908378|ref|YP_002648734.1| ATP-dependent RNA helicase DbpA [Erwinia pyrifoliae Ep1/96]
 gi|224964000|emb|CAX55505.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283478319|emb|CAY74235.1| ATP-dependent RNA helicase dbpA [Erwinia pyrifoliae DSM 12163]
          Length = 459

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 97/443 (21%), Positives = 175/443 (39%), Gaps = 87/443 (19%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIV 352
           Q   GSGKT    + +   V+A     QA+++ P   LA Q       + ++T N +I+ 
Sbjct: 46  QAKTGSGKTAAFGLGVMHRVDASQYVTQALVLCPTRELADQVTKELRRLARFTSNIKILT 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G  P   +R +L    H   HI++GT     D ++   L L     +++DE  R  
Sbjct: 106 --LCGGQPVGAQRDSL---LHA-PHIVVGTPGRILDHLKRETLKLDAISTLVLDEADRML 159

Query: 407 --------------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DISKITEK 451
                           Q R  L   AT P  +   +  I R  +    GD+ D+  I + 
Sbjct: 160 EMGFREDIDTIISHSPQARQTLLFSATWPQAIAQISQSIQRDPLTIETGDVSDLPAIEQT 219

Query: 452 --PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERF 507
              AG +   T +I +             LSE + +  +  C         N +   +  
Sbjct: 220 FYEAGAREKLTALIGL-------------LSERQPSSCVVFC---------NTKRECDEI 257

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
               +    S   +HG +   +++ ++  F NG+C++L+AT V   G+D+   ++++   
Sbjct: 258 AYALDKAQISAQPLHGDLEQRERDRMLIRFANGSCRVLVATDVAARGLDIKALAMVVNYQ 317

Query: 568 AEHFGLAQLHQLRGRVGR-GEEISSCILLYHPP-------------LSKNSYTRLSVLKN 613
                   +H++ GR  R G+E   C + +  P               K  +  LS LK 
Sbjct: 318 LSFDPEVHVHRI-GRTARAGQE--GCAVSFVAPDEMIRAHALEDYLQQKLVWCNLSALKA 374

Query: 614 TEDGFLIAE------EDLKQRK--EGEILG--IKQSGMPKFLIAQPELHDSLLEIA-RKD 662
                L+AE      E  ++ K   G+ILG    + G+    + + ++  +L  +A R++
Sbjct: 375 VAARPLLAEMVTVSLEGGRKAKIRPGDILGALTGEGGLNGDQVGKIDIASTLAYVAIRRE 434

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
               + Q      ++G+S R  L
Sbjct: 435 LARKVMQQLQQVKIKGKSCRARL 457


>gi|251764757|sp|B5FZY7|IF4A3_TAEGU RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|197128100|gb|ACH44598.1| putative DEAD box polypeptide 48 [Taeniopygia guttata]
          Length = 410

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 60  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 113

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 114 TRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 166

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   P   V+L++AT     L 
Sbjct: 167 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 226

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEG 482
           +T+    D  +I  K      + IK   + + R +   + L             +  +  
Sbjct: 227 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 286

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 287 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 327

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 328 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 369


>gi|161617232|ref|YP_001591197.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167551407|ref|ZP_02345162.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|238912241|ref|ZP_04656078.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|161366596|gb|ABX70364.1| hypothetical protein SPAB_05073 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205323747|gb|EDZ11586.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 732

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|164657394|ref|XP_001729823.1| hypothetical protein MGL_2809 [Malassezia globosa CBS 7966]
 gi|159103717|gb|EDP42609.1| hypothetical protein MGL_2809 [Malassezia globosa CBS 7966]
          Length = 402

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 125/293 (42%), Gaps = 46/293 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    +A+   ++      QA+++AP   LAQQ    +        I   
Sbjct: 70  IAQAQSGTGKTATFSVAILQRIDPNLKAVQALVLAPTRELAQQIQNVVVALGDYMNIQCH 129

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-------YYKL-ILVIVDEQHR 405
              G     + R+ + R++ G A +++GT     D I        + K+  L   DE   
Sbjct: 130 ACIGG---TNVREDMARLSDG-AQVVVGTPGRVYDMINRRAFRTDHLKMFCLDEADEMLS 185

Query: 406 FGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G + ++    +L  + T   V+L++AT +P           D+  +T+K   R P++  
Sbjct: 186 RGFKDQMYEVFQLLPQDT--QVVLLSAT-MPE----------DVLAVTKKFM-RDPVR-- 229

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 230 -ILVKRDELTLEGIKQFYIAVEKEEWKFETLTDLYETVTITQAVIFCNTRRKVDWLTEQL 288

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                +++ +HG M    +E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 289 HAMEFTVSAMHGDMDQQQREVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 341


>gi|116668332|pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
           A Resolution
          Length = 374

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 145/340 (42%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    +++   ++      QA+I+AP
Sbjct: 24  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAP 77

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +      G     +  + + ++ +GQ H++ GT     D 
Sbjct: 78  TRELAVQVQKGLLALGDYMNVQCHACIGG---TNVGEDIRKLDYGQ-HVVAGTPGRVFDM 133

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++    +   P   V+L++AT     L +T+
Sbjct: 134 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 193

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGKKA 485
               D  +I  K      + IK   + + R +   + L             +  +  +K 
Sbjct: 194 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 253

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  ++L
Sbjct: 254 DWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGASRVL 294

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 295 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 333


>gi|114794619|pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794620|pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794621|pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794622|pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
          Length = 391

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 39  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 92

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 93  TRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 145

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   P   V+L++AT     L 
Sbjct: 146 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 205

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEG 482
           +T+    D  +I  K      + IK   + + R +   + L             +  +  
Sbjct: 206 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 265

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 266 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 306

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 307 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 348


>gi|91781411|ref|YP_556617.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400]
 gi|91685365|gb|ABE28565.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400]
          Length = 467

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 145/336 (43%), Gaps = 36/336 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++      QA+++ P   LA Q  + I++  +  + I V
Sbjct: 50  IAQAKTGSGKTAAFSLALLARLDVRNFAVQAMVLCPTRELADQVTQEIRRLARAEENIKV 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G  P   +  +LE   HG AHI++GT     D ++   L L     +++DE  R  
Sbjct: 110 LTLCGGTPMRPQTASLE---HG-AHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRML 165

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIK 459
              F       + Q       LL +AT  P  +V  S   L +    K+ E+    K I+
Sbjct: 166 DMGFFDDIATVVKQCPKERQTLLFSAT-YPEGIVKLSQQFLRNPKEVKLAERHDNTK-IR 223

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
                +   DE +  + ++L+  +    +     +++  +   V+ R    H     ++A
Sbjct: 224 QRFYEVTE-DERLHAVGLLLNHYRPVSTLAFCNTKQQCRDLLDVL-RAQGFH-----ALA 276

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++
Sbjct: 277 L-HGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI 335

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
            GR GR ++    + L     S N   R+  L+  +
Sbjct: 336 -GRTGRADQEGWALSLA----SMNEMGRVGSLEQAQ 366


>gi|49478905|ref|YP_037929.1| primosome assembly protein PriA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196047447|ref|ZP_03114659.1| primosomal protein N` [Bacillus cereus 03BB108]
 gi|218904998|ref|YP_002452832.1| primosomal protein N` [Bacillus cereus AH820]
 gi|225865849|ref|YP_002751227.1| primosomal protein N' [Bacillus cereus 03BB102]
 gi|301055359|ref|YP_003793570.1| primosome assembly protein PriA [Bacillus anthracis CI]
 gi|49330461|gb|AAT61107.1| primosomal protein N' [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|196021755|gb|EDX60450.1| primosomal protein N` [Bacillus cereus 03BB108]
 gi|218536635|gb|ACK89033.1| primosomal protein N` [Bacillus cereus AH820]
 gi|225790378|gb|ACO30595.1| primosomal protein N' [Bacillus cereus 03BB102]
 gi|300377528|gb|ADK06432.1| primosome assembly protein PriA [Bacillus cereus biovar anthracis
           str. CI]
          Length = 801

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 262 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 321

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 322 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 377

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 378 P---FENLGIIIIDEEHESSYKQ 397


>gi|55823340|ref|YP_141781.1| primosome assembly protein PriA [Streptococcus thermophilus
           CNRZ1066]
 gi|55739325|gb|AAV62966.1| primosomal replication factor Y [Streptococcus thermophilus
           CNRZ1066]
          Length = 798

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/400 (20%), Positives = 156/400 (39%), Gaps = 112/400 (28%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   +  G  A+++ P I +  Q    FI ++      +V I+
Sbjct: 285 LLEGVTGSGKTEVYLHLIERTLAMGKTAIVLVPEISLTPQMTNRFISRFGD----LVAIM 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ--DSIQYYKLILVIVDEQH-------- 404
              +    +     ++  GQA +++G   A+F   D+I       +I+DE+H        
Sbjct: 341 HSGLSDGEKFDEWRKVRSGQAKVVVGARSAIFAPLDNIG-----AIIIDEEHEATYKQES 395

Query: 405 --RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP---------- 452
             R+  +    L  K+    ++L +ATP   +      G     ++TE+           
Sbjct: 396 NPRYHARDVALLRSKSHGAILVLGSATPSIESRARAQKGVYHFFELTERANPSAKIPQVE 455

Query: 453 -------AGRKPIKTVIIPINRIDEVIERL----KVVLSEGKKAYW-------------- 487
                   GR+       P+  ++++ ERL    +VVL   ++ Y               
Sbjct: 456 VVDFKDFVGRQEASDFTPPL--LEKIRERLARKEQVVLLLNRRGYSSFVMCRDCGYVDDC 513

Query: 488 -----------------------------ICPQIEEKKESNFRSVVER-FNSLHEHFTSS 517
                                        +CP  + ++   + +  ++ ++ L E F  +
Sbjct: 514 PNCDISLTLHMDTKTMNCHYCDFQKAIPNVCPNCQSRQIRYYGTGTQKAYDQLTELFPEA 573

Query: 518 IAIIHGRMSDIDK-------ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE- 569
             I   RM D+D        E ++++F +G   +L+ T +I  G+D  + +++ + NA+ 
Sbjct: 574 RVI---RM-DVDTTRKKGAHEKLLETFGSGKADILLGTQMIAKGLDFPNVTLVGVLNADT 629

Query: 570 -----HFGLAQ-----LHQLRGRVGRGEEISSCILLYHPP 599
                 F  A+     L Q+ GR GR ++    I+  + P
Sbjct: 630 SLNLPDFRSAERTFQLLTQVAGRAGRADKEGEVIIQTYNP 669


>gi|68474769|ref|XP_718592.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
 gi|68474936|ref|XP_718509.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
 gi|74627388|sp|Q5A9Z6|FAL1_CANAL RecName: Full=ATP-dependent RNA helicase FAL1
 gi|46440277|gb|EAK99585.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
 gi|46440366|gb|EAK99673.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
          Length = 399

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 135/324 (41%), Gaps = 67/324 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I M   ++      QA+I++P   LA Q    +K       I   
Sbjct: 67  IAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTH 126

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
              G        K L++   GQ  I+ GT     D     ++Q   + ++I+DE      
Sbjct: 127 ACIGGKNVGEDVKKLQQ---GQ-QIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFT 182

Query: 407 -GVQQRLKLTQKATAPHVLLMT-ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            G ++++    K   P V ++  +  +PR ++  +      SK T  P            
Sbjct: 183 KGFKEQIYEIYKHLPPSVQVVVVSATLPREVLEMT------SKFTTDP------------ 224

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-------------- 510
              +  +++R ++ LS  K+ Y  C    E+++  F ++ + +++L              
Sbjct: 225 ---VKILVKRDEISLSGIKQYYVQC----EREDWKFDTLCDLYDNLTITQAVIFCNTKLK 277

Query: 511 ---------HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
                     ++FT  +  +HG M   +++S+M+ F+ G  ++LI+T V   GIDV   S
Sbjct: 278 VNWLADQMKKQNFT--VVAMHGDMKQDERDSIMNDFRRGNSRVLISTDVWARGIDVQQVS 335

Query: 562 IIIIENAEHFGLAQLHQLRGRVGR 585
           ++I  +        +H++ GR GR
Sbjct: 336 LVINYDLPTDKENYIHRI-GRSGR 358


>gi|116491279|ref|YP_810823.1| superfamily II DNA/RNA helicase [Oenococcus oeni PSU-1]
 gi|116092004|gb|ABJ57158.1| Superfamily II DNA and RNA helicase [Oenococcus oeni PSU-1]
          Length = 454

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 151/360 (41%), Gaps = 44/360 (12%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG- 321
           K +  I F+ PTK Q+  I  I+           + Q   GSGKT   L+ +   ++   
Sbjct: 16  KAIDGISFNKPTKVQKRIIPPIIAGRDV------VGQSQTGSGKTHAFLLPIFNGLDPSL 69

Query: 322 --GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-----ITGNMPQAHRRKALERIAHG 374
              QAVI +P   LA+Q Y+  + + ++   I E      I   +    R K + ++   
Sbjct: 70  EETQAVITSPSRELAEQLYQAFRDFQKSLAAIDENFADLRIADYIGGTDRNKQIRQLERK 129

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           Q  I+IGT    +D +    L++     Q+RF V     +         +   A+ +P  
Sbjct: 130 QPQIVIGTPGRLKDFLSKNFLLV----NQNRFFVVDEADMALDMGFLEDVDTIASAMPDN 185

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVII---PINRI-DEVIERLKVVLSEGKKAYWICP 490
           L +         K+T  P  ++ +K  +I   P++ +  + I+   ++ ++ K    +  
Sbjct: 186 LQMLVFSATIPDKLT--PFLKRYMKNPLIEEIPVSTVVADTIDNY-LLATKSKDKNEVIF 242

Query: 491 QIEEKKESN----FRSVVERFNSLHEHFTSS----IAIIHGRMSDIDKESVMDSFKNGTC 542
            +  +KES     F +  ER + L  HF  S     A +HG +   ++   M   K    
Sbjct: 243 DLLTRKESYLTLVFANTKERVHELA-HFLDSQGLKAAEVHGGIEPRERRRTMKRIKKQEF 301

Query: 543 KLLIATTVIEVGIDVVDASIIIIE----NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + ++AT +   G+D+   S +I +    + E F    +H++ GR GR     + I LY P
Sbjct: 302 QYVVATDLAARGLDIQGVSEVINDDIPTDLEFF----IHRV-GRTGRNGLPGTAITLYGP 356


>gi|225451679|ref|XP_002276467.1| PREDICTED: similar to DEAD/DEAH box helicase family protein [Vitis
           vinifera]
          Length = 540

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 159/389 (40%), Gaps = 98/389 (25%)

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIA 313
           + QK+L+NI  +    PT  Q  AI   L     KN ++     D GSGKT   LV +++
Sbjct: 144 LPQKLLQNIEAAGYEIPTPVQMQAIPAAL---VGKNLLV---SADTGSGKTASFLVPIVS 197

Query: 314 MAAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN--MPQAHR 364
              ++       +    A+++ P   L  Q  E  K   +       ++ G   MP    
Sbjct: 198 RCTSIRPDHSPNQKNPLAMVLTPTRELCMQVEEQAKLLGKGLPFKTALVVGGDAMP---- 253

Query: 365 RKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQ----HRFGVQQRLKLT 415
            + L RI  G   +I+GT     D      I+   + ++++DE      R    Q +++ 
Sbjct: 254 -RQLHRIQQG-VELIVGTPGRLIDLLSKHEIELDDVFMLVLDEVDCMLERGFRDQVMQIY 311

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI---NRIDEVI 472
           +  + P VL+ +AT               IS+  EK A       ++I +   NR +  +
Sbjct: 312 RALSQPQVLMYSAT---------------ISQEVEKVASSMAKDIIVISVGKSNRPNIAV 356

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI------------ 520
           ++L         A W+  + ++KK+  F  +  +     +HFT  + +            
Sbjct: 357 KQL---------AIWV--ESKQKKQKLFDILTSK-----QHFTPPVVVFVGSRLGADLLT 400

Query: 521 -------------IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                        IHG  S  ++  +M SF  G   +++AT V+  G+D++    +I+ +
Sbjct: 401 EAITITTGLKALSIHGEKSMKERREIMSSFLVGEVPVMVATGVLSRGVDLLSVRQVIVFD 460

Query: 568 AEHFGLAQLHQLRGRVGR-GEEISSCILL 595
             +     +HQ+ GR  R GEE ++ + L
Sbjct: 461 MPNSIKEYVHQI-GRASRLGEEGTAILFL 488


>gi|221069351|ref|ZP_03545456.1| primosomal protein N' [Comamonas testosteroni KF-1]
 gi|220714374|gb|EED69742.1| primosomal protein N' [Comamonas testosteroni KF-1]
          Length = 738

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 20/150 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAP-IGILAQQHYEFIKKYTQ--NTQII 351
           +L G  GSGKT V L A+ A ++A    QA++M P I +  Q    FI ++      + +
Sbjct: 183 LLYGSTGSGKTEVYLRAVQAMLDASPEAQALVMVPEINLTPQLEERFIARFVPRYGREAV 242

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH------ 404
           V + +G M    R K+      G+A I++GT  A+F    Q   L L++VDE+H      
Sbjct: 243 VSMHSG-MTNPQRLKSWLAAHTGRARIVLGTRMAIFASVPQ---LALIVVDEEHDASYKQ 298

Query: 405 ----RFGVQQRLKLTQKATAPHVLLMTATP 430
               R+  +       + T   V+L +ATP
Sbjct: 299 QEGARYSARDLAIWRGRDTGAKVILGSATP 328


>gi|207859282|ref|YP_002245933.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206711085|emb|CAR35459.1| primosomal protein replication factor [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 732

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|149203654|ref|ZP_01880623.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. TM1035]
 gi|149142771|gb|EDM30813.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. TM1035]
          Length = 759

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 143/342 (41%), Gaps = 53/342 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---------GQAVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A  +  G           A+I+AP   LA Q   E    Y +
Sbjct: 36  LVSAQTGSGKTVGFGLAIAPTLLGGEDRLPPAAAPLALIVAPTRELALQVMRELSWLYAE 95

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILV 398
               +V  + G M     R+ALER     AHI++GT     D I    L        +L 
Sbjct: 96  AGARLVTCV-GGMDARDERRALER----GAHIVVGTPGRLCDHINRGALDMTSLRAIVLD 150

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK---PAGR 455
             DE    G ++ L+          +L  A    RTL+ ++     I+K+ EK    A R
Sbjct: 151 EADEMLDLGFREDLEF---------MLAAAPEDRRTLMFSATVPPMIAKLAEKFQRDAQR 201

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSLH 511
             + T+       D   + L V   + + A     +  + + +    N R++V R  +  
Sbjct: 202 --VTTLTGAKQHADIAYQALTVSPQDAEGAVINLLRYHDAQNAIVFANTRAMVARLTARL 259

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IEN 567
            +   ++  + G +S  ++   + + ++G  ++ +AT V   GID+ +  +++      N
Sbjct: 260 SNRGFAVVSLSGELSQSERTHALQAMRDGRARVCVATDVAARGIDLPNLDLVVHAELPTN 319

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL-SKNSYTRL 608
           +E  GL       GR GR + IS+ I+    PL S N   RL
Sbjct: 320 SE--GLLHRSGRTGRAGR-KGISALIV----PLKSANKAERL 354


>gi|119469744|ref|ZP_01612613.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Alteromonadales bacterium TW-7]
 gi|119446991|gb|EAW28262.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Alteromonadales bacterium TW-7]
          Length = 435

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 154/361 (42%), Gaps = 50/361 (13%)

Query: 263 QKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--E 319
           Q  L ++ +S PT  Q  AI  +L           I   + GSGKT    + M   +  E
Sbjct: 20  QARLTDLEYSQPTPIQAKAIPSVLAGSD------LIAGANTGSGKTATFALPMLQKLFLE 73

Query: 320 AGGQ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKA 367
            G +           +I+ P   LA Q  + +K Y+ N    ++ +   G +    + +A
Sbjct: 74  QGAKKTASKGNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQA 133

Query: 368 LERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
           L     G A II+ T     D     +I+  K+  +++DE  R      L  T++  A  
Sbjct: 134 L----RGGADIIVATPGRLLDLISSNAIKLDKVTTLVLDEADRM---LSLGFTEE-LAEL 185

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLS 480
           + LM A    +T++ ++     ++++T+K     P++   I +   DE  +++R+  V +
Sbjct: 186 LALMPAKK--QTMLFSATFPEQVTQLTQKLL-TNPVE---IQVQSKDESTLVQRVFTV-N 238

Query: 481 EGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           +G+K   +   I+E K        N +   E      E    +  + HG     ++  V+
Sbjct: 239 KGEKTTVLAHLIKEHKWRQALIFVNAKKDCEHLAGKLEKRGINAQVFHGDKGQSERTRVI 298

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + FK G  ++LIAT +   G+D+    ++I  N        +H++ GR GR  E+   + 
Sbjct: 299 EKFKAGEIEVLIATDIAARGLDIAKLPVVINFNLPRSPADYMHRI-GRSGRAGEVGLALS 357

Query: 595 L 595
           L
Sbjct: 358 L 358


>gi|94501002|ref|ZP_01307527.1| primosome assembly protein PriA [Oceanobacter sp. RED65]
 gi|94426942|gb|EAT11925.1| primosome assembly protein PriA [Oceanobacter sp. RED65]
          Length = 733

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 131/302 (43%), Gaps = 43/302 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELL-AG---QIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           PR+    EW      ++++ + L AG    I   L+ KQ   E+    N        + +
Sbjct: 137 PRQKAFLEWLQKQNHKVSHKQALDAGFTPSIIGQLIDKQLVSELWQD-NFNALCGDSVEQ 195

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGKTLVALIAMAAAVEAGGQAVI 326
            +  +  K QE A+K I    S+KN    +L +G  GSGKT V L A+++AV    Q ++
Sbjct: 196 ALALN--KEQEQALKGI----SEKNGFNPVLLEGVTGSGKTEVYLQAISSAVTQRKQVLV 249

Query: 327 MAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL---ERIAHGQAHIIIGT 382
           + P IG+  Q     ++++ Q     + ++   +    R  A     R  + +A IIIGT
Sbjct: 250 LIPEIGLTPQT----VQRFQQRFNADILLLHSGLNDQQRLNAWLQASRHKNEKAQIIIGT 305

Query: 383 H-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-----------TQKATAPHVLLMTATP 430
             A+F    +   L  +IVDE+H    +Q+  +             K   P ++L +ATP
Sbjct: 306 RSAVF---TEMPNLDFIIVDEEHDASYKQQEGIRYHGRDIAVIRAAKRNIP-IILGSATP 361

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-------IDEVIERLKVVLSEGK 483
              +L    +      ++T++     P    I  I +        DE+++ ++  L +G 
Sbjct: 362 SLDSLHNALVKKYQHIRLTQRAGDASPANLEIYDIRKQSVEHGIADELLQHIEETLEQGD 421

Query: 484 KA 485
           +A
Sbjct: 422 QA 423


>gi|219667645|ref|YP_002458080.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
 gi|219537905|gb|ACL19644.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 428

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 136/322 (42%), Gaps = 50/322 (15%)

Query: 302 VGSGKT------LVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            G+GKT      ++  +AM   +  G +   A+++AP   LA Q  E    Y  N  +  
Sbjct: 50  TGTGKTAAFAIPILQSLAMGQGLLKGKRQIRALVLAPTRELATQIAESFTAYGVNLPLRT 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            +I G + QA + + LE+       I++ T     D I    + L  V+        Q L
Sbjct: 110 LVIFGGVGQAPQTRKLEK----GIDILVATPGRLLDLINQGFIDLSHVEHFVLDETDQML 165

Query: 413 KLTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
            +       H +    T +PR    ++ ++   ++I K+ +    + P+K  + P     
Sbjct: 166 DMGML----HDVKRIITYLPRERQNMLFSATMPVEIEKLADTIL-KGPVKIAMTPEFSPL 220

Query: 470 EVIERLKVVLSEGKKA----YWICPQIEEKKESNFRSVVERFNSLH-----------EHF 514
           ++IE+    + +  KA    YW+       K + + SV+    + H           + F
Sbjct: 221 DIIEQEVYFVDKANKAALLTYWL-------KNNEYDSVLVFSRTKHGADKIVKELNKKGF 273

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           T+    IHG  S  ++E  + +FK    ++L+AT +   G+D+ + S +I  N       
Sbjct: 274 TA--VAIHGNKSQANREQALHAFKKRKTRILVATDIAARGLDIQELSHVINYNLPEVPET 331

Query: 575 QLHQLRGRVGR----GEEISSC 592
            +H++ GR GR    G+ I+ C
Sbjct: 332 YIHRI-GRTGRAGLGGKAITFC 352


>gi|76781331|gb|ABA54551.1| vasa-like protein [Monopterus albus]
          Length = 618

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 151/377 (40%), Gaps = 58/377 (15%)

Query: 258 EGKIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           E ++ + + RN+  S    PT  Q+  I  I    S    ++   Q   GSGKT   L+ 
Sbjct: 196 EAELCETLRRNVSKSGYVKPTPVQKHGIPII----SAGRDLMACAQ--TGSGKTASFLLP 249

Query: 314 -----MAAAVEAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
                M   V A         +A+I+AP   L  Q Y   +K+   T +   ++ G +  
Sbjct: 250 ILQQLMVDGVAASCFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVST 309

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-----FGVQQR 411
            ++   +  I  G  +++ GT     D I   K+ L     +++DE  R     F    R
Sbjct: 310 GYQ---IREILKG-CNVLCGTPGRLLDMIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMR 365

Query: 412 LKLTQKATAP---HVLLMTATPIPRTLVLTSLG----DIDISKITEKPAGRKPIKTVIIP 464
             +      P   H  LM +   P  +   +      D     + E       ++   + 
Sbjct: 366 RLVGSPGMPPKENHQTLMFSATFPEDIQRMAADFLKTDYLFLAVGEVGGACTDVEQTFVQ 425

Query: 465 INRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           + +    D+++E LK   +E    +      E K++++F   +  F    +  T+SI   
Sbjct: 426 VTKFSKRDQLVEFLKTTGTERTMVF-----AETKRQADF---IALFLCQEKVPTTSI--- 474

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG     ++E  +  F++G C +L+AT+V   G+D+ D   ++  +  +     +H++ G
Sbjct: 475 HGDREQPEREKALADFRSGKCLVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRI-G 533

Query: 582 RVGRGEEISSCILLYHP 598
           R GR   I   +  + P
Sbjct: 534 RTGRCGNIGRAVSFFDP 550


>gi|70725957|ref|YP_252871.1| hypothetical protein SH0956 [Staphylococcus haemolyticus JCSC1435]
 gi|123660708|sp|Q4L7W0|Y956_STAHJ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SH0956
 gi|68446681|dbj|BAE04265.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 503

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 138/335 (41%), Gaps = 68/335 (20%)

Query: 299 QGDVGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           Q   G+GKT    I +   V  ++G QA+I+AP   LA Q  E ++++++   + V  + 
Sbjct: 45  QAQTGTGKTGAFGIPLIEKVVGQSGVQALILAPTRELAMQVAEQLREFSRGQNVQVVTVF 104

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGV 408
           G MP   + KAL+R       I++GT     D +          + LIL   DE    G 
Sbjct: 105 GGMPIDRQIKALKR----GPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGF 160

Query: 409 QQRLKLTQK---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
              ++       A     +L +AT +P                       K I+T++   
Sbjct: 161 IDDMRFIMDKIPAEQRQTMLFSAT-MP-----------------------KAIQTLVQQF 196

Query: 466 NRIDEVIERLKVVLSEGK--KAYWICPQIEE-KKESNFRSVVE--------RFNSLHEHF 514
            +  ++++ +   +S+ +  + Y I  ++E+    +NF  V +        R     +  
Sbjct: 197 MKSPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDEL 256

Query: 515 TSSI-------AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII---- 563
           TS++         +HG ++   +  V+  FKN    +L+AT V   G+D+   S +    
Sbjct: 257 TSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFD 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           I ++ E +     H++ GR GR  +    +   +P
Sbjct: 317 IPQDTESY----THRI-GRTGRAGKEGIAVTFVNP 346


>gi|47569495|ref|ZP_00240175.1| primosomal protein N` [Bacillus cereus G9241]
 gi|47553824|gb|EAL12195.1| primosomal protein N` [Bacillus cereus G9241]
          Length = 801

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 262 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 321

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 322 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 377

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 378 P---FENLGIIIIDEEHESSYKQ 397


>gi|320158479|ref|YP_004190857.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus MO6-24/O]
 gi|319933792|gb|ADV88655.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus MO6-24/O]
          Length = 459

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 131/310 (42%), Gaps = 37/310 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I QG  GSGKT    + + + +       Q++++ P   LA Q    I+   +    I V
Sbjct: 44  IGQGKTGSGKTATFSLGLLSNLNVSRFRVQSLVLCPTRELADQVATEIRTLARGIHNIKV 103

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR-- 405
             + G MP   +  +LE   HG AHI++GT       L +  I   +L  +++DE  R  
Sbjct: 104 LTLCGGMPMGPQILSLE---HG-AHILVGTPGRILDHLSKGRIDLAELNTLVLDEADRML 159

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIK 459
              F       +    T    LL +AT  P    T+    + + ++ K+ E    +  I+
Sbjct: 160 EMGFQDAIDAIIDAAPTQRQTLLFSAT-FPEQIETIASKVMQNPEMVKV-ESTHQKSTIE 217

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHFTSS 517
                +   +E    L+ +L   +    +  C     KKE   ++V +  N  H  F  S
Sbjct: 218 QRFYQLESTEERDNALEALLLTHRPESTVVFC---NTKKE--VQNVTDELN--HRRF--S 268

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +  +HG M   ++E  +  F N +  +L+AT V   G+DV +   +I  N E     ++H
Sbjct: 269 VIELHGDMEQRERERALTMFANKSISILVATDVAARGLDVDNLDAVI--NFELSRDPEVH 326

Query: 578 QLR-GRVGRG 586
             R GR GR 
Sbjct: 327 VHRIGRTGRA 336


>gi|312375100|gb|EFR22532.1| hypothetical protein AND_15065 [Anopheles darlingi]
          Length = 821

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 151/372 (40%), Gaps = 68/372 (18%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
            PT  Q  AI   LQ     NR + I   + GSGKTL  LI +   +++           
Sbjct: 415 DPTPIQRQAIPIGLQ-----NRDI-IGIAETGSGKTLAFLIPLLTWIQSLPKIERQETAD 468

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G  A+I+AP   LAQQ  E  +K+     I   ++ G +    R +   R+  G   I+
Sbjct: 469 QGPYAIILAPTRELAQQIEEETQKFGTPLGIRTVVVVGGL---SREEQGFRLRLG-CEIV 524

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKL---------TQKA 418
           I T     D ++   L+L     +++DE  R         VQ+ L+          T++A
Sbjct: 525 IATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEA 584

Query: 419 TAPHVLL---MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                L+    T     +T++ T+     + ++  +   R+P    I  I +  E  E++
Sbjct: 585 EDASKLMENFNTKKKYRQTVMFTATMPPAVERLA-RTYLRRPATVYIGSIGKPTERTEQI 643

Query: 476 KVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             ++ E  K   +   +    E       N +   +      E    +   +HG      
Sbjct: 644 IHIMGENDKRKKLMEILSRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 703

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVG 584
           +E  + S KNG+  +L+AT V   GID+ D S++I     ++ +A+      H++ GR G
Sbjct: 704 REYALASLKNGSKDILVATDVAGRGIDIKDVSLVI-----NYDMAKSIEDYTHRI-GRTG 757

Query: 585 R----GEEISSC 592
           R    G  IS C
Sbjct: 758 RAGKTGCAISFC 769


>gi|310793610|gb|EFQ29071.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 474

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 141/354 (39%), Gaps = 76/354 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----AGGQAVIMA 328
           P+K QE A+  +L D  +      I Q   G+GKT   ++   + V+       QA+I+A
Sbjct: 86  PSKIQEKALPLMLADPPRN----MIAQSQSGTGKTAAFVVTTLSRVDYTQLEQPQALILA 141

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q    + K       I     G    A    ALER A  +A++I+GT     D
Sbjct: 142 PSRELARQIEGVVGK-------IGSFCEGLRVAAALPGALERNAPVRANVIVGTPGTVMD 194

Query: 389 SIQ-----YYKLILVIVDEQHRFGVQQRLK---LTQKATAP---HVLLMTATPIPRTLVL 437
            I+       KL L+++DE      QQ L    +  K   P    +LL +AT  P  ++ 
Sbjct: 195 IIRRRQLDVSKLRLLVIDEADNMLDQQGLGDQCVRVKNMLPRDIQILLFSAT-FPDKVM- 252

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV-IERLKVVLSEGKKAYWICPQIEEKK 496
                       EK A             + D++ ++  ++ +    + Y  CP  ++K 
Sbjct: 253 ---------GFAEKFA------------PKADQIRLKHTELTVKGISQMYMDCPTEQDKY 291

Query: 497 E-----------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           E                    R   +      E     ++ +HG     +++ +++ F++
Sbjct: 292 EVLVKLYGLMTIGSSVIFVKTRESADEIKRRMEADGHRVSALHGAKDGPERDRLLEEFRS 351

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ--------LHQLRGRVGR 585
           G  K+L+ T V+  GIDV   S++I  +    G           LH++ GR GR
Sbjct: 352 GQSKVLLTTNVLARGIDVSSVSMVINYDIPMKGRGDSEPDPETYLHRI-GRTGR 404


>gi|331249448|ref|XP_003337341.1| ATP-dependent RNA helicase DBP5 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309316331|gb|EFP92922.1| ATP-dependent RNA helicase DBP5 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 536

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 153/368 (41%), Gaps = 64/368 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+K QE A+  +LQ+  +      I Q   G+GKT   ++ M + V+   +  QA+ + P
Sbjct: 155 PSKIQERALPLLLQNPPRN----MIGQSQSGTGKTAAFVLTMLSRVDVSQSCPQAICVCP 210

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  +  ++  Q        +TG   +   +  LER      HII+GT    +D+
Sbjct: 211 SRELARQIMDVAEQMGQ-------YVTGLTKRLASKDTLERGEKITEHIIVGTPGTIKDA 263

Query: 390 IQYYKLI-------------LVIVDE-----------QHRFGVQQRLKLTQKATAPHVLL 425
           +  +++              +++ DE           +   GV+    +T+      ++L
Sbjct: 264 LTSHRISGTRESVIDPSGIKVLVADEADVLVGTGSLGEQTIGVKN--AITRSNNTVQIVL 321

Query: 426 MTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID---EVIERLKVVL 479
            +AT  P   R        + +  K+ +     + IK   +  N  +   EV+  L  +L
Sbjct: 322 FSAT-FPEHVRKYASKFAPNANEIKLKKDELTLEGIKQFYMDCNDAEHKYEVLVELYHLL 380

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + G+   +     +E++ ++   +  R N         +A++HG      ++  +D F+ 
Sbjct: 381 TVGQSIIFA----QERRTAD--EIAHRMNKDGH----KVAVLHGAQMGEGRDQTIDDFRE 430

Query: 540 GTCKLLIATTVIEVGIDVVDASIII---IENAEHFGL---AQLHQLRGRVGRGEEISSCI 593
           G  K+L+ T V+  GID+   ++++   +    H G      LH++ GR GR       I
Sbjct: 431 GRSKVLVTTNVVARGIDISQVNLVVNYDLPKDPHKGADAETYLHRI-GRTGRFGRKGISI 489

Query: 594 LLYHPPLS 601
              H P S
Sbjct: 490 NFIHDPRS 497


>gi|253681398|ref|ZP_04862195.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
 gi|253561110|gb|EES90562.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
          Length = 370

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 142/351 (40%), Gaps = 59/351 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT  QE ++  I      KN    I +   G+GKT   L+ M   +       Q +I+ P
Sbjct: 24  PTPIQEKSMDLI------KNGNDVIAEAQTGTGKTFAFLLPMFENMSPNINKIQGLIVTP 77

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  E   K  +   + +    G    + + K L+    G  H+II T     D 
Sbjct: 78  TRELAIQITEEANKLKKAKDLNILAAYGGKDISSQLKKLK----GNIHLIIATPGRLLDH 133

Query: 389 ----SIQYYKLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
               +I   KL  +++DE  +         V++ +K   K T       T     + L  
Sbjct: 134 IKRNTINIEKLKTIVLDEADQMLYMGFKNEVEEIMKHISKKTQILCFSATMNSQVKKLAY 193

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
             + + ++  I  +    K IK  ++      E  +R        +K   +C  ++E  +
Sbjct: 194 RYMKEPNVVSIQNEEVTLKNIKQAVV------ETTDR--------RKQDALCKVLDE--D 237

Query: 498 SNFRSVV-----ERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           + F +++      R ++L         +   IHG ++   +E VM  FKN   + LIAT 
Sbjct: 238 NAFMAIIFCRTKRRVDNLEAALHQRGYNCKKIHGDLTQSKRERVMKEFKNMDIQYLIATD 297

Query: 550 VIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGR-GEEISSCILL 595
           V   G+D+   + +    I EN E +    +H++ GR GR GE+  +C+ +
Sbjct: 298 VAARGLDISGVTHVYSYDIPENTESY----IHRI-GRTGRAGEKGETCLFI 343


>gi|194017071|ref|ZP_03055683.1| ATP-dependent RNA helicase DbpA [Bacillus pumilus ATCC 7061]
 gi|194010939|gb|EDW20509.1| ATP-dependent RNA helicase DbpA [Bacillus pumilus ATCC 7061]
          Length = 480

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 155/367 (42%), Gaps = 51/367 (13%)

Query: 292 NRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           +R   I++   GSGKT    + +  M    E   QA+I+ P   LA Q  + +    +  
Sbjct: 40  SRQDLIVKSQTGSGKTAAYGLPICEMVDWAENKPQALILVPTRELAMQVKQDLTSLGRLK 99

Query: 349 QIIVEIITGNMP-QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399
           +I    I G  P QA + +  ++      HI+ GT     D ++   L        +L  
Sbjct: 100 RIKAAAIYGKAPFQAQKVELAQK-----NHIVCGTPGRVLDHLEKGTLSLENLKFFVLDE 154

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            DE    G  +++    +   P  + M        L   ++ D ++ K++E+   + P  
Sbjct: 155 ADEMLNMGFIEQVSSIIEYLPPKRMSM--------LFSATMSD-EMKKLSEQFL-QSP-- 202

Query: 460 TVIIPINRIDEVIERLK--VVLSEGKKAYWICPQ--IEEKKESN--FRSVVERFNSLH-- 511
             +I I R +  + ++   V+ +E +  + +  +  + E  +S   F +  +R N L   
Sbjct: 203 -KVIEIAREETSVPQITHTVIETEEEAKFSLLQRTIVIENPDSCIIFCNTQDRVNELTMK 261

Query: 512 -EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            + +      IHG M   D+ +VMD FKNG  + LIAT +   GIDV D + +I  +  +
Sbjct: 262 LDDWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIATDIAARGIDVSDMTHVIHYDLPY 321

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI------AEED 624
                +H+  GR GR  +    I      ++KN+   +  LK  E G          +ED
Sbjct: 322 EKERYIHRT-GRTGRAGKSGKTIAF----MTKNAKPLIDELKQ-EAGIDFKTQPYPTKED 375

Query: 625 LKQRKEG 631
            +Q  EG
Sbjct: 376 AEQHVEG 382


>gi|208779079|ref|ZP_03246425.1| conserved hypothetical protein [Francisella novicida FTG]
 gi|254374120|ref|ZP_04989602.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548]
 gi|151571840|gb|EDN37494.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548]
 gi|208744879|gb|EDZ91177.1| conserved hypothetical protein [Francisella novicida FTG]
          Length = 569

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 47/334 (14%)

Query: 299 QGDVGSGKTLVALIAM-----AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           Q   G+GKT    + +      A+ +   Q +++AP   LA Q  E  + + +N   + V
Sbjct: 50  QAQTGTGKTAAFALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDV 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQH 404
             I G      + +AL++       +++GT     D I+           L+L   DE  
Sbjct: 110 ACIYGGQEYGSQIRALKQ----GVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEML 165

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           R G    +K  L+  +     LL +AT IP           DI+ I E+   R P K  +
Sbjct: 166 RMGFIDDVKFVLSHVSDECQRLLFSAT-IP----------TDIADIIEEYL-RNPCKIQV 213

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--------RSVVERFNSLHEHF 514
               +    + + K ++ +G +      ++ E +E++          S +E  ++L +  
Sbjct: 214 KAKTKTANTVTQ-KFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTSTIEVTDNL-KAL 271

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A I+G M    +E ++D F++    +L+AT V+  GID+   S +I  +  +    
Sbjct: 272 GYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPNDTDT 331

Query: 575 QLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTR 607
            +H++ GR GR G E +S  L+   PL +  + R
Sbjct: 332 YVHRI-GRTGRAGREGTSISLV---PLKEMRFLR 361


>gi|308062342|gb|ADO04230.1| primosome assembly protein PriA [Helicobacter pylori Cuz20]
          Length = 619

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + ++A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHSA-SLLFGDTGSGKTEIYMHSIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      + + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKRVFKEN----LGLWHSKLSQTQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 219 LKELGLIIVDEEHDFS 234


>gi|258645737|ref|ZP_05733206.1| ATP-dependent RNA helicase DeaD [Dialister invisus DSM 15470]
 gi|260403106|gb|EEW96653.1| ATP-dependent RNA helicase DeaD [Dialister invisus DSM 15470]
          Length = 424

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 132/310 (42%), Gaps = 40/310 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I + + G+GKTL  L+ +   V+    G Q +IM P   LA+Q ++ ++ +    +  V 
Sbjct: 43  IGRSETGTGKTLAYLLPLVQRVDVKKGGTQVLIMTPTRELAKQIFDVLRPFAILMEADVA 102

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G     ++ + L+R    + HIIIGT     D I+   L L     V++DE  +   
Sbjct: 103 DIIGGRTIENQIQKLKR----EPHIIIGTPGRLLDHIRRRSLDLSGVKTVVLDEADQMLA 158

Query: 407 -GVQQRLK--LTQKATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G ++ +   + +      VLL +AT  P  + L    +    ++ + EK       + V
Sbjct: 159 AGFREDIDALVDETPKKRQVLLFSATMPPEAKKLAHKYMKSAVVADVAEKAVASTVEQRV 218

Query: 462 --IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
              +  ++   ++  LK +      A   C   E   E   R        L E     + 
Sbjct: 219 YETVKTHKFSLLVRHLKEI--NPYMAVVFCNTREGAHELAGR--------LQEETDLVVD 268

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQ 575
            IHG MS   +  V+  F+    ++L+A+ +   G+DV   + +    I  N E++    
Sbjct: 269 EIHGNMSQGQRNQVIREFEKARTQVLVASDIAARGLDVEGITHVFNYDIPRNLEYY---- 324

Query: 576 LHQLRGRVGR 585
           +H++ GR GR
Sbjct: 325 IHRI-GRTGR 333


>gi|219847371|ref|YP_002461804.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219541630|gb|ACL23368.1| DEAD/DEAH box helicase domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 550

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 135/320 (42%), Gaps = 35/320 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           I Q   G+GKT    + M   V  E   QA+++AP   LA Q  E + +Y ++  + V  
Sbjct: 43  IAQAQTGTGKTAAFALPMIEQVTDEPVVQALVLAPTRELAVQVAEAVHRYGRHRALRVLP 102

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF--- 406
           I G  P     + L  +A G   +++GT       L + ++++  L LV++DE       
Sbjct: 103 IYGGQPI---ERQLRGLAQG-VQVVVGTPGRVLDHLRRGTLRFDHLRLVVLDEADEMLDM 158

Query: 407 GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT---SLGDIDISKITEK---PAGRKPI 458
           G  + L+   + T       L +AT  P    LT   +   + +S   E+   P  R+ I
Sbjct: 159 GFAEELEAILQLTPAERQTALFSATLPPAVQSLTLRYTRQPVRVSIAAEQLTTPHIRQ-I 217

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
              I+  +++D +   L   + +   A   C   +E  E     + ER         S  
Sbjct: 218 YYEILARDKLDALCRVLDAEMPQ--LAIVFCRTRQEVDE-----IGERLQGRGYAAES-- 268

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG +S   ++ VM  F+ G   +L+AT V   G+D+ + S +I  +      + +H+
Sbjct: 269 --LHGDLSQAVRDRVMRRFREGQLDVLVATDVAARGLDIAEVSHVINYDVPTDPESYVHR 326

Query: 579 LRGRVGRGEEISSCILLYHP 598
           + GR GR       I    P
Sbjct: 327 I-GRTGRAGRAGVAITFITP 345


>gi|168467442|ref|ZP_02701279.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195630123|gb|EDX48763.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 732

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|156553787|ref|XP_001602045.1| PREDICTED: similar to GH10652p [Nasonia vitripennis]
          Length = 682

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 139/338 (41%), Gaps = 57/338 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  ++     +          G  A+++AP   LAQQ  +    + 
Sbjct: 192 MVGIAQ--TGSGKTLAYILPAIVHINNQPRLQRGDGPIALVLAPTRELAQQIQQVAADFG 249

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIV 400
            ++Q+    I G  P+  + + LER       I I T       L + +    +   +++
Sbjct: 250 VSSQVRNTCIFGGAPKGPQARDLER----GVEICIATPGRLIDFLERGTTNLRRCTYLVL 305

Query: 401 DEQHRF---GVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITE 450
           DE  R    G + ++ K+ ++       LM +   P+ +       LT    I+I  +  
Sbjct: 306 DEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVRNLAEEFLTDYIQINIGSLQ- 364

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNF----RSVV 504
                      +   + I ++++  +    EGK  K      Q  E K   F    R V 
Sbjct: 365 -----------LAANHNILQIVDVCEEYEKEGKLMKLLEEISQEAENKTIIFVETKRKVD 413

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           E   +++ +   +I I HG  S  +++ V++ F++    +L+AT V   G+DV D   +I
Sbjct: 414 EITRAINRYGWQAIGI-HGDKSQQERDYVLNQFRSSRSAILVATDVAARGLDVEDVKFVI 472

Query: 565 ----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                 N+E +    +H++ GR GR +   +    + P
Sbjct: 473 NLDYPSNSEDY----VHRI-GRTGRSQRTGTAYAFFTP 505


>gi|115910860|ref|XP_001177628.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68
           [Strongylocentrotus purpuratus]
 gi|115968720|ref|XP_001178951.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 1
           [Strongylocentrotus purpuratus]
          Length = 600

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 134/343 (39%), Gaps = 52/343 (15%)

Query: 302 VGSGKTLVALIAMAAAVE---------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            GSGKTL  L+     +           G  A+++AP   LAQQ  +    + ++++I  
Sbjct: 155 TGSGKTLSYLLPSIVHINHQPFLERGVDGPIALVLAPTRELAQQVQQVAFAFGRSSKIKS 214

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G  P+  + + LER       I I T     D ++  K  L     V++DE  R  
Sbjct: 215 TCVYGGAPKGQQIRDLER----GVEICIATPGRLIDFLENNKTNLRRCTYVVLDEADRML 270

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              F  Q R  + Q           AT P  +   A    R  ++ ++G + +S      
Sbjct: 271 DMGFEPQIRKIMEQIRPDRQVQMWSATWPKDVRNLAEDFIRDYIMVNIGSLTLS------ 324

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    ++  II +    E  ++L  +L E         Q ++ K   F     R + L  
Sbjct: 325 ANHNILQ--IIDVCEDSEKDKKLIQLLEE-------IMQEKDNKTLVFCETKRRTDDLVR 375

Query: 513 HFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                      +HG  S  +++ V+  F++G   +L+AT V   G+DV D   +I  +  
Sbjct: 376 RMRRDGWPAMCLHGDKSQPERDWVLSEFRDGRAPILVATDVASRGLDVTDIKFVINYDYP 435

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     +H++ GR  R     +    +     K +   ++VL+
Sbjct: 436 NSSEDYVHRI-GRTARSTRTGTAYTFFTRNNMKQAADLINVLQ 477


>gi|15889610|ref|NP_355291.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
 gi|15157502|gb|AAK88076.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 502

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 122/295 (41%), Gaps = 38/295 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           + +I+AP   L  Q  + ++ + + T + +  + G      ++  LE+       I++ T
Sbjct: 89  RTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQLQLEK----GTDILVAT 144

Query: 383 HALFQD-----SIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP--HVLLMTATPIP 432
                D     +I   K+  +++DE  +    G    L+   +   P    LL +AT +P
Sbjct: 145 PGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPPKRQTLLFSAT-MP 203

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI-DEVIERLKVVLSEGKKAYWICPQ 491
           +     ++ ++  + +T+      PIK  + P  +  D+V + +  V  +  K   +   
Sbjct: 204 K-----AISELASNFLTD------PIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKS 252

Query: 492 IEEKKESNFRSVV--------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           + E  +   RS+V        E+     EH    +A IHG  S   +E  +  FK+G  K
Sbjct: 253 LNENPDG--RSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIK 310

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +L+AT V   GID+   + +   +      A +H++ GR  R       I    P
Sbjct: 311 VLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRI-GRTARAGRDGIAIAFCAP 364


>gi|15618833|ref|NP_225119.1| primosome assembly protein PriA [Chlamydophila pneumoniae CWL029]
 gi|15836457|ref|NP_300981.1| primosome assembly protein PriA [Chlamydophila pneumoniae J138]
 gi|16752112|ref|NP_445479.1| primosome assembly protein PriA [Chlamydophila pneumoniae AR39]
 gi|33242287|ref|NP_877228.1| primosome assembly protein PriA [Chlamydophila pneumoniae TW-183]
 gi|8928278|sp|Q9Z6Y2|PRIA_CHLPN RecName: Full=Primosomal protein N'; AltName: Full=ATP-dependent
           helicase priA; AltName: Full=Replication factor Y
 gi|4377246|gb|AAD19062.1| Primosomal Protein N' [Chlamydophila pneumoniae CWL029]
 gi|7189855|gb|AAF38725.1| primosomal protein N` [Chlamydophila pneumoniae AR39]
 gi|8979298|dbj|BAA99132.1| primosomal protein N' [Chlamydophila pneumoniae J138]
 gi|33236798|gb|AAP98885.1| primosomal replication factor Y [Chlamydophila pneumoniae TW-183]
          Length = 749

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 20/203 (9%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q+SAI  I   +        +L G  GSGKT + L A + A++ G   +++ P I +  Q
Sbjct: 214 QQSAIDKIFSSLKTSQFHTHLLFGITGSGKTEIYLRATSEALKQGKSTILLVPEIALTVQ 273

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               F  ++ ++    V ++   +  + + +   + + G   I+IG   ALF        
Sbjct: 274 TVSLFKARFGKD----VGVLHHKLSDSDKSRTWRQASEGSLRILIGPRSALF---CPMKN 326

Query: 395 LILVIVDEQHRFGVQQ---------RLKLTQKATAPH--VLLMTATPIPRTLVLTSLGDI 443
           L L+IVDE+H    +Q         R     +    H  V+L +ATP   +      G  
Sbjct: 327 LGLIIVDEEHDPAYKQTESPPCYHARDVAVMRGKLAHATVVLGSATPSLESYTNALSGKY 386

Query: 444 DISKITEKPAGRKPIKTVIIPIN 466
            +S+++ + A   P K  +I +N
Sbjct: 387 VLSRLSSRAAAAHPAKISLINMN 409


>gi|315586956|gb|ADU41337.1| DNA replication factor Y [Helicobacter pylori 35A]
          Length = 619

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + ++A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHSA-SLLFGDTGSGKTEIYMHSIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      + + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKRVFKEN----LGLWHSKLSQTQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 219 LKELGLIIVDEEHDFS 234


>gi|262191439|ref|ZP_06049626.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae CT 5369-93]
 gi|262032679|gb|EEY51230.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio cholerae CT 5369-93]
          Length = 734

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    SQ+     +L+G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 199 PRLNQEQAIA-IAAVNSQQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 258 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIMIGTRSALLTP-- 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 312 FAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALTG 371

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 372 KYHHLQLTQRAGNALPTRN 390


>gi|238878985|gb|EEQ42623.1| eukaryotic initiation factor 4A-12 [Candida albicans WO-1]
          Length = 399

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 135/324 (41%), Gaps = 67/324 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I M   ++      QA+I++P   LA Q    +K       I   
Sbjct: 67  IAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTH 126

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
              G        K L++   GQ  I+ GT     D     ++Q   + ++I+DE      
Sbjct: 127 ACIGGKNVGEDVKKLQQ---GQ-QIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFT 182

Query: 407 -GVQQRLKLTQKATAPHVLLMT-ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            G ++++    K   P V ++  +  +PR ++  +      SK T  P            
Sbjct: 183 KGFKEQIYEIYKHLPPSVQVVVVSATLPREVLEMT------SKFTTDP------------ 224

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-------------- 510
              +  +++R ++ LS  K+ Y  C    E+++  F ++ + +++L              
Sbjct: 225 ---VKILVKRDEISLSGIKQYYVQC----EREDWKFDTLCDLYDNLTITQAVIFCNTKLK 277

Query: 511 ---------HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
                     ++FT  +  +HG M   +++S+M+ F+ G  ++LI+T V   GIDV   S
Sbjct: 278 VNWLADQMKKQNFT--VVAMHGDMKQDERDSIMNDFRRGNSRVLISTDVWARGIDVQQVS 335

Query: 562 IIIIENAEHFGLAQLHQLRGRVGR 585
           ++I  +        +H++ GR GR
Sbjct: 336 LVINYDLPTDKENYIHRI-GRSGR 358


>gi|205354329|ref|YP_002228130.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205274110|emb|CAR39119.1| primosomal protein replication factor [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326629454|gb|EGE35797.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 732

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVM 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|200388655|ref|ZP_03215267.1| putative primosomal protein N' [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199605753|gb|EDZ04298.1| putative primosomal protein N' [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 732

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|169773397|ref|XP_001821167.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Aspergillus
           oryzae RIB40]
 gi|91207407|sp|Q2UH00|PRP28_ASPOR RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|83769028|dbj|BAE59165.1| unnamed protein product [Aspergillus oryzae]
          Length = 803

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 121/299 (40%), Gaps = 42/299 (14%)

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+++AP   LAQQ     KK+T+     V  I G      +  +L       A III
Sbjct: 445 GPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSL----RNGAEIII 500

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLTQKA-----------TAP 421
            T     D I+   L+L     VI+DE  R    G ++ +     A            A 
Sbjct: 501 ATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSEEAE 560

Query: 422 HVLLM-----TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           + + M     T     +T++ T+     + +I  K   R  I T+      +D V +R++
Sbjct: 561 NSMAMSQHIGTKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVE 620

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----------SIAIIHGRMS 526
            +  E K+   +   +       FR  +  F ++  +  +          S   +HG  +
Sbjct: 621 FIAGEDKRKKRLGDIL---SSGEFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKT 677

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +E+ + S +NG   +L+AT +   GIDV D S++I  N      +  H++ GR GR
Sbjct: 678 QEQREAALASVRNGQTDVLVATDLAGRGIDVPDVSLVINFNMATTIESYTHRI-GRTGR 735


>gi|42524591|ref|NP_969971.1| ATP-dependent DNA helicase RecQ [Bdellovibrio bacteriovorus HD100]
 gi|39576801|emb|CAE78030.1| ATP-dependent DNA helicase RecQ [Bdellovibrio bacteriovorus HD100]
          Length = 530

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 501 RSVVERFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           R V E   + L + F  S+   H  ++   + S  +++  G  ++L+AT    +GID  D
Sbjct: 249 RKVTESIAAFLQKKFGKSVGYYHAGLTSEVRTSTQEAYAKGELRILVATNAFGMGIDQPD 308

Query: 560 ASIIIIENAEHF----GLAQLHQLRGRVGRGEEISSCILLY 596
             +++     HF     +  L+Q  GR GR  E S+C+ LY
Sbjct: 309 VRLVV-----HFQIPANIDALYQEMGRAGRDGEHSTCLTLY 344


>gi|163941606|ref|YP_001646490.1| primosome assembly protein PriA [Bacillus weihenstephanensis KBAB4]
 gi|163863803|gb|ABY44862.1| primosomal protein N' [Bacillus weihenstephanensis KBAB4]
          Length = 801

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 262 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 321

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++     ++   ++        RK L +    +  +++G   A+F 
Sbjct: 322 EIALTPQMVDRFKGRFGSQVAVLHSALSIGEKYDEWRKILRK----EVKVVVGARSAIFA 377

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 378 P---FENLGIIIIDEEHESSYKQ 397


>gi|46111511|ref|XP_382813.1| hypothetical protein FG02637.1 [Gibberella zeae PH-1]
 gi|91206544|sp|Q4IJH1|DBP3_GIBZE RecName: Full=ATP-dependent RNA helicase DBP3
          Length = 581

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 138/333 (41%), Gaps = 52/333 (15%)

Query: 300 GDVGSGKTLVALIAMAAAVEA----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            + GSGKT+   +    A+ A      +AV+++P   LA Q YE +       ++    +
Sbjct: 205 AETGSGKTMAFALPCVEAISALKHKHTKAVVVSPTRELAMQTYEQMASVAALNRMKCVCL 264

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---G 407
            G   +  +R  L R     A II+ T    +D     ++        ++DE  R    G
Sbjct: 265 YGGASKDDQRNLLNR----GADIIVATPGRLKDFMSDGTVDLSHSAFAVLDEADRMLDKG 320

Query: 408 VQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI- 462
            ++ +K+   +  P      L+ TAT       L +   +   KI     G++     + 
Sbjct: 321 FEEDIKMILSSCPPREKRQTLMFTATWPQSVQTLAATFMVSPVKIAIGSGGKETAGGAVE 380

Query: 463 IPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS-------VVERFNSLHEHF 514
           +  N RI + +E    VL    K + +   ++E ++ + ++       + ++  +  E+F
Sbjct: 381 LQANARISQSVE----VLEPRGKEFRLLEVLKEHQQGSKKNDRILVFCLYKKEATRIENF 436

Query: 515 TSSIAI----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII------ 564
            S   I    IHG +    +   +++FK+G   +L+AT V   G+D+ +  ++I      
Sbjct: 437 LSRKGIRVGGIHGDLRQEQRTRSLEAFKSGQTPVLVATDVAARGLDIPEVKLVINVTFPL 496

Query: 565 -IENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            IE+        +H++ GR GR  +    I  +
Sbjct: 497 TIED-------YVHRI-GRTGRAGKTGQAITFF 521


>gi|328849200|gb|EGF98385.1| hypothetical protein MELLADRAFT_22529 [Melampsora larici-populina
           98AG31]
          Length = 815

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 137/333 (41%), Gaps = 58/333 (17%)

Query: 302 VGSGKTLVALIAM------AAAVEA--GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+ M         +EA  G  A+IM P   LA Q Y+  + + +   +   
Sbjct: 194 TGSGKTLAFLLPMFRHIKDQRPLEALEGPIAMIMTPTRELATQIYKEGRPFLKALGLRAA 253

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDS---IQYYKLILVIVDEQHR 405
              G  P       ++R     A +I+ T       L  +S   I   ++  +++DE  R
Sbjct: 254 CAYGGSPLKDNIADMKR----GAEVIVCTPGRMIELLTTNSGRVINMRRVTYLVLDEADR 309

Query: 406 F---GVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP-----AGRK 456
               G + Q +K+  +       ++ +   P+ +   +       KI  +P      GR 
Sbjct: 310 MFDMGFEPQVMKIVNQIRPDRQTVLFSATFPKQMEALA------RKILRRPLEITVGGRS 363

Query: 457 PIKTVIIPI----------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            + + I  I          NR+ E++ R     SE +   ++  Q  E  ++ FR ++++
Sbjct: 364 VVASEIEQIVEVRDDSTKFNRLLEILGRFYNEDSESRSLVFVDRQ--ESADNLFRDLLKK 421

Query: 507 -FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            +  L          +HG    +D++ V+  FK G   ++IAT+V   G+DV    ++I 
Sbjct: 422 GYPCLS---------LHGGKEQVDRDQVIADFKAGVTPIVIATSVAARGLDVKQLKLVIN 472

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +A +     +H+  GR GR     +CI    P
Sbjct: 473 YDAPNHMEDYVHRA-GRTGRAGNKGTCITFISP 504


>gi|325289283|ref|YP_004265464.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964684|gb|ADY55463.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 382

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 128/292 (43%), Gaps = 41/292 (14%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  E ++ Y +   I   +I G + Q  + +A++        I++ T
Sbjct: 77  RALILAPTRELALQTGENLRAYGKYLGIKHTVIFGGVSQDAQTRAMK----AGVDILVAT 132

Query: 383 HA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIP 432
                  + Q  ++   + L+++DE  R    G    +K  L +   A   LL +AT  P
Sbjct: 133 PGRLLDLMGQGYVRLDHIKLLVLDEADRMLDMGFAHDMKRILAKLPAAKQTLLFSATMPP 192

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQ 491
               + ++    +S          P+K  + P++   + I++ +  V   GKKA  I  +
Sbjct: 193 E---MKAMAGAILSN---------PVKIEVAPVSSTADTIDQSVYFVEKSGKKALLI--E 238

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIA-------IIHGRMSDIDKESVMDSFKNGTCKL 544
           +   +  +   V  R     ++   ++         IHG  S   +++ +++FK    ++
Sbjct: 239 LLRNQSVDSALVFTRTKHGADNVVRALEKARIKAQAIHGNKSQAARQTALNNFKAKRTRV 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           L+AT +   GIDV + S +I  +  +     +H++ GR GR    G  +S C
Sbjct: 299 LVATDIAARGIDVQELSHVINFDLPNIPETYVHRI-GRTGRAGMGGTALSFC 349


>gi|229526712|ref|ZP_04416116.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
 gi|229336870|gb|EEO01888.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
          Length = 422

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 132/337 (39%), Gaps = 41/337 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQG-DVGSGKTLV-------ALIAMAAAVEAGGQ 323
           +PT  Q+ AI  +LQ          +L G   G+GKT           I      EA  +
Sbjct: 28  NPTPIQQQAIPHVLQGKD-------VLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSK 80

Query: 324 ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I
Sbjct: 81  EIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHL----RGGVDILI 136

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D      L L     +++DE  R      +   Q+      +L   +P+ +TL
Sbjct: 137 ATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR------VLRRLSPLRQTL 190

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             ++  D  I  +  +   R PI+  + P N   E ++++   + + +K   +   I  K
Sbjct: 191 FFSATFDSKIKAVAYRIM-RDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSK 249

Query: 496 KESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                  F    +  ++L E           I+G  S   ++  +D FK G  + LIAT 
Sbjct: 250 NWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATD 309

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           V   G+D+     ++  +        +H++ GR GR 
Sbjct: 310 VAARGLDIAQLEQVVNYDMPFKAEDYVHRI-GRTGRA 345


>gi|229140514|ref|ZP_04269069.1| Primosomal protein N' [Bacillus cereus BDRD-ST26]
 gi|228643075|gb|EEK99351.1| Primosomal protein N' [Bacillus cereus BDRD-ST26]
          Length = 767

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 228 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|229162804|ref|ZP_04290761.1| Primosomal protein N' [Bacillus cereus R309803]
 gi|228620686|gb|EEK77555.1| Primosomal protein N' [Bacillus cereus R309803]
          Length = 767

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 228 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|209550473|ref|YP_002282390.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536229|gb|ACI56164.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 567

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 125/297 (42%), Gaps = 34/297 (11%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHGQA 376
           + +I+AP   L  Q  E +KK+ + + + + ++ G +    ++  LE+         G+ 
Sbjct: 77  RTLILAPTRELVNQIAETLKKFIRKSHLRINVVVGGVSINKQQLQLEKGTDVLVATPGRL 136

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRT 434
             +I   A+   +++Y  L+L   D+    G    L+   K        +L +AT +P+ 
Sbjct: 137 LDLINRRAISLTTVRY--LVLDEADQMLDLGFVHDLRKIAKMVPKKRQTMLFSAT-MPKA 193

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI-DEVIERLKVVLSEGKKAYWICPQIE 493
           +   + GD  +           P+K  + P  +  D+V + +  V  +  K   +   + 
Sbjct: 194 IADLA-GDYLVD----------PVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKSLT 242

Query: 494 EKKESNFRSVV--------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           E  +   R++V        E+     E+   S+A IHG  S   +E  + +F++G+ K L
Sbjct: 243 ENPDG--RAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTL 300

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           IAT V   GID+   S +   +      A +H++ GR  R       I    P  +K
Sbjct: 301 IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRI-GRTARAGRDGIAIAFCAPDEAK 356


>gi|190405005|gb|EDV08272.1| eukaryotic initiation factor 4A-12 [Saccharomyces cerevisiae
           RM11-1a]
          Length = 399

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 136/318 (42%), Gaps = 52/318 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I +  A++      QA+I++P   LA Q  + +K       +   
Sbjct: 64  IAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAF 123

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRFGV 408
            ITG        K +++  HG    + GT     D I     Q   + ++++DE     +
Sbjct: 124 AITGGKTLKDDLKKMQK--HG-CQAVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADEL-L 179

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            + L   Q+    + +        + +V+++  + DI ++T K     P+K ++      
Sbjct: 180 SETLGFKQQI---YDIFAKLPKNCQVVVVSATMNKDILEVTRKFMN-DPVKILV------ 229

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL------------------ 510
               +R ++ L EG K Y +     +K+E  F ++ + ++SL                  
Sbjct: 230 ----KRDEISL-EGIKQYVVNV---DKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWL 281

Query: 511 -HEHFTSSIAII--HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                 S+ A++  HG M   +++ VM+ F+ G  ++LI+T V   GIDV   S++I  +
Sbjct: 282 SQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYD 341

Query: 568 AEHFGLAQLHQLRGRVGR 585
                   +H++ GR GR
Sbjct: 342 LPEIIENYIHRI-GRSGR 358


>gi|188527848|ref|YP_001910535.1| primosome assembly protein PriA [Helicobacter pylori Shi470]
 gi|188144088|gb|ACD48505.1| primosome assembly protein PriA [Helicobacter pylori Shi470]
          Length = 619

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + ++A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHSA-SLLFGDTGSGKTEIYMHSIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      + + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKRVFKEN----LGLWHSKLSQTQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 219 LKELGLIIVDEEHDFS 234


>gi|6807980|emb|CAB70733.1| hypothetical protein [Homo sapiens]
          Length = 399

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +  ++I  + 
Sbjct: 68  AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSP 127

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                + +H+  GR GR      CI  Y P
Sbjct: 128 PQDVESYIHR-SGRTGRAGRTGICICFYQP 156


>gi|326625813|gb|EGE32158.1| primosomal protein N' [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 732

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|295693194|ref|YP_003601804.1| primosomal protein n' [Lactobacillus crispatus ST1]
 gi|295031300|emb|CBL50779.1| Primosomal protein N' [Lactobacillus crispatus ST1]
          Length = 799

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 13/138 (9%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q+ A+  I Q + Q+     +L+G  GSGKT V L A++ A++ G  A+++ P I +  Q
Sbjct: 267 QQGALNQITQAIEQRQAETFLLEGITGSGKTEVYLHAISKALKQGRNALMLVPEISLTPQ 326

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ--DSIQY 392
              +   ++ Q     V ++   + +  +     RI  G+  +++G   A+F   D+I  
Sbjct: 327 MVRQVKARFGQE----VAVLHSALSEGEKYDEWRRIRRGETKVVVGARSAVFAPLDNIG- 381

Query: 393 YKLILVIVDEQHRFGVQQ 410
               L+++DE+H    +Q
Sbjct: 382 ----LIVIDEEHESSYKQ 395


>gi|196232968|ref|ZP_03131817.1| primosomal protein N' [Chthoniobacter flavus Ellin428]
 gi|196222946|gb|EDY17467.1| primosomal protein N' [Chthoniobacter flavus Ellin428]
          Length = 741

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 4/115 (3%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L G  GSGKT + L A+   +E G  A+++ P   L  Q  E  K     T+  V ++ 
Sbjct: 229 LLHGVTGSGKTEIYLQAIQLVLERGQTAIMLVPEISLTPQTVERFKSRFAATRHEVAVLH 288

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            ++ +  R     +I  G+A I+IG   A+F        L L++VDE+H    +Q
Sbjct: 289 SHLSEGERHDEWHKIRDGRARIVIGARSAIFAPCAN---LGLIVVDEEHENTYKQ 340


>gi|221056913|ref|XP_002259594.1| DEAD-box subfamily ATP-dependant helicase [Plasmodium knowlesi
           strain H]
 gi|193809666|emb|CAQ40367.1| DEAD-box subfamily ATP-dependant helicase,putative [Plasmodium
           knowlesi strain H]
          Length = 816

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 9/83 (10%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFG 572
           S  I+ G+MS+ ++++ +D+F+ G  + LI T V   GID+ +   +II    +N   F 
Sbjct: 607 SCVILKGKMSNTERKNNLDAFRKGEVRFLICTDVAARGIDIQNLRYLIIMTLSDNINSF- 665

Query: 573 LAQLHQLRGRVGRGEEISSCILL 595
               H++ GRVGR  + S CI+L
Sbjct: 666 ---FHKI-GRVGRDGKNSLCIVL 684


>gi|71897163|ref|NP_001025820.1| eukaryotic initiation factor 4A-III [Gallus gallus]
 gi|82197884|sp|Q5ZM36|IF4A3_CHICK RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|53127756|emb|CAG31207.1| hypothetical protein RCJMB04_3e17 [Gallus gallus]
          Length = 412

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 62  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 115

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 116 TRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 168

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   P   V+L++AT     L 
Sbjct: 169 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 228

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEG 482
           +T+    D  +I  K      + IK   + + R +              I +  +  +  
Sbjct: 229 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 288

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 289 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 329

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 330 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 371


>gi|326915068|ref|XP_003203843.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Meleagris
           gallopavo]
          Length = 369

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 145/340 (42%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 19  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 72

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +      G     +  + + ++ +GQ H++ GT     D 
Sbjct: 73  TRELAVQIQKGLLALGDYMNVQCHACIGG---TNVGEDIRKLDYGQ-HVVAGTPGRVFDM 128

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++    +   P   V+L++AT     L +T+
Sbjct: 129 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 188

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGKKA 485
               D  +I  K      + IK   + + R +   + L             +  +  +K 
Sbjct: 189 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 248

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  ++L
Sbjct: 249 DWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGASRVL 289

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 290 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 328


>gi|320586704|gb|EFW99374.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 498

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 171/396 (43%), Gaps = 63/396 (15%)

Query: 249 KEIGI-PINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           +E+G+ P  +EG      LR++ F  P+K QE A+  +L D  +      I Q   G+GK
Sbjct: 65  EELGLKPSIIEG------LRSLSFIKPSKIQERALPLMLSDPPRN----MIAQSQSGTGK 114

Query: 307 TLVALIAMAAAVEAG----GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           T   ++ + + V+       QA+++AP   LA+Q    I         I +   G    A
Sbjct: 115 TAAFVVTVLSRVDFSIPHTPQALVLAPSRELARQIESVINS-------IGQFCEGLQVAA 167

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRFGVQQRLK---L 414
                + R +  QA++++GT     D ++  +L      ++++DE      QQ L    +
Sbjct: 168 AIPGVIGRGSAVQANVVVGTPGTVMDLMRRRQLDPAGLKVLVIDEADNMLDQQGLGEQCV 227

Query: 415 TQKATAP---HVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIKTVIIPI--- 465
             K   P    VLL +AT  P  ++  +     + +  ++ ++    K I  + +     
Sbjct: 228 RVKEKLPKTIQVLLFSAT-FPEKVMRYAEKFASNANQMRLRQQELTIKGISQMYMDCPSE 286

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           N   E++ +L  +++ G    ++       K  N  + ++R      H    +A +HG  
Sbjct: 287 NDKYEILCKLYGLMTIGSSVIFV-------KTRNSATEIQRRMEADGH---QVAALHGAY 336

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII--------IENAEHFGLAQLH 577
               ++ +++ F++G  K+LI T V+  GIDV   S++I        + + E      LH
Sbjct: 337 EGEARDVLLNDFRSGKYKVLITTNVLARGIDVSSVSMVINYDIPMKGVGDREPDAETYLH 396

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           ++ GR GR   +   I   +    K S+  L+ + N
Sbjct: 397 RI-GRTGRFGRVGVSISFVY---DKKSFNALAEIAN 428


>gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
 gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
          Length = 695

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 136/325 (41%), Gaps = 47/325 (14%)

Query: 302 VGSGKT----LVALIAMAAAVEAGG-----QAVIMAPIGILAQQHYEFIKKY-TQNTQII 351
            G+GKT    L AL  MA   +  G     Q +++AP   LA Q  E    Y T      
Sbjct: 150 TGTGKTAAFALPALSRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFT 209

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD----------SIQYYKLILVIVD 401
           V  I G  P   +   L R     A +++GT     D          ++QY  L+L   D
Sbjct: 210 VLPIYGGSPYGPQLAGLRR----GAQVVVGTPGRVIDHLEKGSLDLSNLQY--LVLDEAD 263

Query: 402 EQHRFGVQQRLKLTQKAT--APHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRK 456
           E  R G  + ++   + T  A  V L +AT +P   R +    L D    ++  K     
Sbjct: 264 EMLRMGFAEDVETILEGTPDAKQVALFSAT-MPNSIRKIAQQYLNDPTEVRVKTKTTTGA 322

Query: 457 PIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            I+   + +   +++D +   L+V   +G     I   +  KKE+    V ++  +    
Sbjct: 323 NIRQRYMQVMHSHKLDAMTRVLEVENYDG-----IIVFVRTKKETE--EVADKLKA--RG 373

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F +  A I+G +    +E  +D+ ++G   +L+AT V   G+DV   S+++  +  H   
Sbjct: 374 FQA--AAINGDIPQQLRERTVDALRDGRIDILVATDVAARGLDVERISLVVNYDIPHDTE 431

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
           + +H++ GR GR       IL   P
Sbjct: 432 SYVHRI-GRTGRAGRDGEAILFVTP 455


>gi|316931850|ref|YP_004106832.1| primosomal protein N' [Rhodopseudomonas palustris DX-1]
 gi|315599564|gb|ADU42099.1| primosomal protein N' [Rhodopseudomonas palustris DX-1]
          Length = 736

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 28/201 (13%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGI-PINVEGKIAQKILRNIP---------- 270
           +PAR RL   E+L+    LL  +    KE G+ P  ++G + +  L   P          
Sbjct: 139 TPARRRLL--EILSD--GLLHGKSDVAKEAGVSPGVIDGLVDEGTLSVEPMPRENPAPEP 194

Query: 271 ---FSP---TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
              F+P   +  Q  A + I   ++       ++ G  GSGKT V   A+A  +  G Q+
Sbjct: 195 DPDFAPAAFSPEQARAAETIRGLVTAGGFQAALIDGVTGSGKTEVYFEAVAEVIRQGRQS 254

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH- 383
           +I+ P   L  Q   F+ ++ Q   +        +    R +    IA G+A +++G   
Sbjct: 255 LILMPEIALTGQ---FLDRFAQRFGVRPLEWHSELTPRTRARNWAAIAAGEARVVVGARS 311

Query: 384 ALFQDSIQYYKLILVIVDEQH 404
           ALF   + Y  L L+IVDE+H
Sbjct: 312 ALF---LPYADLGLIIVDEEH 329


>gi|255715335|ref|XP_002553949.1| KLTH0E10890p [Lachancea thermotolerans]
 gi|238935331|emb|CAR23512.1| KLTH0E10890p [Lachancea thermotolerans]
          Length = 589

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 163/396 (41%), Gaps = 83/396 (20%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           + + +   IP  + G I  K+       PT  Q + I ++L      N    +     GS
Sbjct: 185 RNWTETNSIPTEIVGIIETKLKY---LEPTPIQRATIPNVL------NGRDFVGVAATGS 235

Query: 305 GKTLVALIAMAAAVEA-----------GGQAVIMAPIGILAQQ---HYEFIKKYTQNTQI 350
           GKTL  LI     +             G  A+I+AP   LAQQ       + K+      
Sbjct: 236 GKTLAFLIPPLCQLNNTPPLNDITKMDGPSALILAPTRELAQQIEAEANKVVKFLHRPTK 295

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAH---IIIGTHALFQDSIQYYKLIL-----VIVDE 402
           +V ++ G+        ++E I++  +H   I++ T     D ++   L+L     +I+DE
Sbjct: 296 VVSLVGGH--------SVEEISYSLSHGCDILVATPGRLIDCLESNILVLQQVRTLILDE 347

Query: 403 QHR---FGVQQRLKL----TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA-- 453
             R   FG + +L      T+       ++ TAT +  T+   + G ++      KPA  
Sbjct: 348 ADRMIDFGFEDQLTTILARTESVKGRQTMMFTAT-MSSTIERIANGYLN------KPAYV 400

Query: 454 --GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF---- 507
             G +  K       +I +V++ L    SE ++   +C  +  +    FRS +  F    
Sbjct: 401 RVGSQDTKA------QIKQVVQYLP---SEEQRFSRLCRDVLPR----FRSPIMIFINYK 447

Query: 508 ---NSLHEHFTSS----IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
              + L   F+S     +  +HG  S   +E  ++  ++G   ++IAT V   GID+ + 
Sbjct: 448 RTADWLAAKFSSETRYRVTTLHGSKSQEQREHSLNLLRSGKADIMIATDVAGRGIDIPNV 507

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           S+++           +H++ GR GR  + S C L +
Sbjct: 508 SLVVNFQMCTSFEGYIHRI-GRTGRAGK-SGCALTF 541


>gi|228922622|ref|ZP_04085922.1| Primosomal protein N' [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228837051|gb|EEM82392.1| Primosomal protein N' [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 767

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 228 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|225434327|ref|XP_002266157.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297745752|emb|CBI15808.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 70/330 (21%), Positives = 134/330 (40%), Gaps = 49/330 (14%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKT    I M     A        G  A+++AP   LAQQ  + +K ++++    
Sbjct: 167 AETGSGKTAAFAIPMIQHCLAQPPVRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSF 226

Query: 352 -VEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHR 405
              I+ G    + +R  L        +I++ T     H L + +    ++  V++DE  R
Sbjct: 227 RTAIVVGGTNISEQRSEL----RAGVNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADR 282

Query: 406 F---GVQQRLK-LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
               G + +++ + Q     H  L+ +  +P  + + +L    ++   +   G+     V
Sbjct: 283 MLDMGFEPQIREVMQNLPQKHQTLLFSATMP--MEIETLAQEYLNNPVQVKVGK-----V 335

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS---------VVERFNSLHE 512
             P   + +++E++    SE +K   +   + E+     R           VER     E
Sbjct: 336 SCPTANVSQILEKV----SESEKIDGLLALLVEEASQAERCGRPFPLTIVFVERKTRCDE 391

Query: 513 HFTSSIA------IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              + +A       +HG  S  ++E+ +  F+NG   +L+AT V   G+DV   + +I  
Sbjct: 392 VAEALVAQGLRAVALHGGRSQAEREAALRDFRNGATNILVATDVASRGLDVTGVAHVINL 451

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +        +H++ GR GR          Y
Sbjct: 452 DLPKAMENYVHRI-GRTGRAGSTGQATSFY 480


>gi|156937925|ref|YP_001435721.1| CRISPR-associated helicase Cas3 [Ignicoccus hospitalis KIN4/I]
 gi|156566909|gb|ABU82314.1| CRISPR-associated helicase Cas3 [Ignicoccus hospitalis KIN4/I]
          Length = 543

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 11/128 (8%)

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L  +F S + ++HGR+S+ DK++ ++  +    K++++T VIE G+D VDA+ +I E A 
Sbjct: 271 LRPYFGSDLVLVHGRLSEEDKKNSVNKIEKA--KVVVSTQVIEAGVD-VDATWLITEAAP 327

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS-----VLKNTEDGFLIAEED 624
              ++ L Q  GR+ R  +     +    P   + Y   S      +K   +G  I   +
Sbjct: 328 ---VSSLAQRAGRLCRSRDCDVAKVTVLAPSKGDPYGDASEKAFKTVKEVAEGGGIEWRE 384

Query: 625 LKQRKEGE 632
           L   + G+
Sbjct: 385 LDDTQSGK 392


>gi|118497286|ref|YP_898336.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. novicida U112]
 gi|194323589|ref|ZP_03057366.1| conserved hypothetical protein, putative [Francisella tularensis
           subsp. novicida FTE]
 gi|118423192|gb|ABK89582.1| DEAD-box subfamily ATP-dependent helicase [Francisella novicida
           U112]
 gi|194322444|gb|EDX19925.1| conserved hypothetical protein, putative [Francisella tularensis
           subsp. novicida FTE]
          Length = 569

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 47/334 (14%)

Query: 299 QGDVGSGKTLVALIAM-----AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           Q   G+GKT    + +      A+ +   Q +++AP   LA Q  E  + + +N   + V
Sbjct: 50  QAQTGTGKTAAFALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDV 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQH 404
             I G      + +AL++       +++GT     D I+           L+L   DE  
Sbjct: 110 ACIYGGQEYGSQIRALKQ----GVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEML 165

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           R G    +K  L+  +     LL +AT IP           DI+ I E+   R P K  +
Sbjct: 166 RMGFIDDVKFVLSHVSDECQRLLFSAT-IP----------TDIADIIEEYL-RNPCKIQV 213

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--------RSVVERFNSLHEHF 514
               +    + + K ++ +G +      ++ E +E++          S +E  ++L +  
Sbjct: 214 KAKTKTANTVTQ-KFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTSTIEVTDNL-KAL 271

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A I+G M    +E ++D F++    +L+AT V+  GID+   S +I  +  +    
Sbjct: 272 GYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPNDTDT 331

Query: 575 QLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTR 607
            +H++ GR GR G E +S  L+   PL +  + R
Sbjct: 332 YVHRI-GRTGRAGREGTSISLV---PLKEMRFLR 361


>gi|62261419|gb|AAX77988.1| unknown protein [synthetic construct]
          Length = 604

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 47/334 (14%)

Query: 299 QGDVGSGKTLVALIAM-----AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           Q   G+GKT    + +      A+ +   Q +++AP   LA Q  E  + + +N   + V
Sbjct: 76  QAQTGTGKTAAFALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDV 135

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQH 404
             I G      + +AL++       +++GT     D I+           L+L   DE  
Sbjct: 136 ACIYGGQEYGSQIRALKQ----GVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEML 191

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           R G    +K  L+  +     LL +AT IP           DI+ I E+   R P K  +
Sbjct: 192 RMGFIDDVKFVLSHVSEQCQRLLFSAT-IP----------TDIADIIEEYL-RNPCKIQV 239

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--------RSVVERFNSLHEHF 514
               +    + + K ++ +G +      ++ E +E++          S +E  ++L +  
Sbjct: 240 KAKTKTANTVTQ-KFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTSTIEVADNL-KAL 297

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A I+G M    +E ++D F++    +L+AT V+  GID+   S +I  +  +    
Sbjct: 298 GYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPNDTDT 357

Query: 575 QLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTR 607
            +H++ GR GR G E +S  L+   PL +  + R
Sbjct: 358 YVHRI-GRTGRAGREGTSISLV---PLKEMRFLR 387


>gi|67524949|ref|XP_660536.1| hypothetical protein AN2932.2 [Aspergillus nidulans FGSC A4]
 gi|74657405|sp|Q5B948|IF4A_EMENI RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|40744327|gb|EAA63503.1| hypothetical protein AN2932.2 [Aspergillus nidulans FGSC A4]
          Length = 421

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 130/302 (43%), Gaps = 64/302 (21%)

Query: 297 ILQGDVGSGKT----LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           I Q   G+GKT    + AL  +   V+A  QA+I+AP   LAQQ  + +        I  
Sbjct: 89  IAQAQSGTGKTATFSISALQKLDPNVKAC-QALIVAPTRELAQQIQKVVIAIGDFMNIQC 147

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQH 404
               G         AL         I++GT     D IQ   L        IL   DE  
Sbjct: 148 HACIGGTAVRDDMNALRE----GPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEML 203

Query: 405 RFGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
             G  +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P++ 
Sbjct: 204 SRGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPVRI 249

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE--------------- 505
           ++          ++ ++ L EG K ++I  + EE K      + E               
Sbjct: 250 LV----------KKQELTL-EGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRR 298

Query: 506 RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + + L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S+
Sbjct: 299 KVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSL 358

Query: 563 II 564
           +I
Sbjct: 359 VI 360


>gi|281345231|gb|EFB20815.1| hypothetical protein PANDA_010757 [Ailuropoda melanoleuca]
          Length = 404

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 59  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 112

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 113 TRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 165

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   P   V+L++AT     L 
Sbjct: 166 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 225

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEG 482
           +T+    D  +I  K      + IK   + + R +              I +  +  +  
Sbjct: 226 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 285

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 286 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 326

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 327 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 368


>gi|228947587|ref|ZP_04109877.1| Primosomal protein N' [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228812107|gb|EEM58438.1| Primosomal protein N' [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 767

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 228 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++     ++   ++        RK L +    +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQVAVLHSALSVGEKYDEWRKILRK----EVKVVVGARSAVFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|228987011|ref|ZP_04147137.1| Primosomal protein N' [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228772789|gb|EEM21229.1| Primosomal protein N' [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 767

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 228 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++     ++   ++        RK L +    +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQVAVLHSALSVGEKYDEWRKILRK----EVKVVVGARSAVFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|182419575|ref|ZP_02950823.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237668830|ref|ZP_04528814.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182376610|gb|EDT74185.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237657178|gb|EEP54734.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 480

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 153/368 (41%), Gaps = 68/368 (18%)

Query: 261 IAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           I+++IL+ +       P++ QE  I +I+ +         I++   GSGKT    I +  
Sbjct: 10  ISEEILKAVDGLGYKKPSEVQEKVIPEIILNKDV------IVKSQTGSGKTAAFAIPICE 63

Query: 317 AV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
            V   E   Q ++++P   LA Q  E      +  +I    + G  P + + +AL++   
Sbjct: 64  KVDWNENAPQVLVLSPTRELAVQVSEDFVNIGRFKRIKSVAVFGKQPISEQARALKQ--- 120

Query: 374 GQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            + H++ GT     D     S+   K+   ++DE       + L +        V+    
Sbjct: 121 -KTHVVCGTPGRVLDHIDRGSLDVKKIKYFVIDE-----ADEMLNMGFIGQVEGVIRRLP 174

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE----------RLKVV 478
                TL   ++ D +I  + EK   R P+   I     +++ IE          R K++
Sbjct: 175 KKKVTTLFSATISD-EIRTLCEKYMDR-PVDISIEKQKVVNDNIEHGLYYVDYNERFKLL 232

Query: 479 LSEGKKAYWICPQIEEKKESN--FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESV 533
                    IC    EK E+   F    E  + ++    S   S   IHG M   ++ S 
Sbjct: 233 -----NELLIC----EKPETAVIFGRTKENVDEIYNFLKSKGYSCGRIHGGMLQKERLSA 283

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQLHQLRGRVGR--- 585
           MDSF+ G  ++L AT V   GID+ + + +I     +F L     A +H++ GR GR   
Sbjct: 284 MDSFRKGEFRILSATDVAARGIDIENITHVI-----NFELPVEKEAYVHRI-GRSGRAGK 337

Query: 586 -GEEISSC 592
            G+ IS C
Sbjct: 338 SGKAISIC 345


>gi|156973048|ref|YP_001443955.1| primosome assembly protein PriA [Vibrio harveyi ATCC BAA-1116]
 gi|156524642|gb|ABU69728.1| hypothetical protein VIBHAR_00727 [Vibrio harveyi ATCC BAA-1116]
          Length = 733

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 19/189 (10%)

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQN 347
           SQ      +L+G  GSGKT V L  +   +E G QA+++ P IG+  Q     I ++ + 
Sbjct: 213 SQTGFACYLLEGVTGSGKTEVYLNLIKPVLEQGKQALVLVPEIGLTPQT----INRFKRR 268

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + V++I   +    R  A        A IIIGT +       +  L ++IVDE+H   
Sbjct: 269 FNVPVDVIHSGLNDTERLNAWLSARDKAAGIIIGTRSALLTP--FADLGIIIVDEEHDSS 326

Query: 408 VQQRLKL-----------TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            +Q+  L             K   P ++L +ATP   TL     G      +T++     
Sbjct: 327 YKQQDSLRYHARDVAVMRAHKEQVP-IVLGSATPALETLHNALTGKYHHLTLTQRAGSAV 385

Query: 457 PIKTVIIPI 465
           P    ++ +
Sbjct: 386 PTTNKVLDV 394


>gi|148556699|ref|YP_001264281.1| DEAD/DEAH box helicase domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148501889|gb|ABQ70143.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1]
          Length = 593

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 132/338 (39%), Gaps = 70/338 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---------IMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A  +  G +A+         I+AP   LA Q   E    Y +
Sbjct: 40  LVSAQTGSGKTVAYGLAIAETLLQGAEALPRAGEPLALIIAPTRELALQVQRELQWLYAK 99

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVD 401
               +V  + G   +  +R+    +++G  HI++GT    +D     ++Q   L  VI+D
Sbjct: 100 LGARVVSCVGGMNVRVEQRQ----LSYG-CHIVVGTPGRLKDHLERGALQPGSLRAVILD 154

Query: 402 EQHR---FGVQQRLKLTQKATAPH--VLLMTATPIPRTLVL------------------T 438
           E       G ++ L+     T P    LL +AT +P+ + L                   
Sbjct: 155 EADEMLDLGFREDLEEILDLTPPERRTLLFSAT-MPKPIALLAKRYQRDALRIQTTSERE 213

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S  DID   +   PA    I+  ++ + R             E K A   C         
Sbjct: 214 SHADIDYRAMAVAPAD---IQNAVVNVLR-----------FHEAKGAMVFC--------- 250

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             R  V R ++       S   + G +S  ++   + + ++   ++ +AT V   GID+ 
Sbjct: 251 ATRENVRRLSATLTERGFSAVTLSGELSQNERNHALQALRDRRARVCVATDVAARGIDLP 310

Query: 559 DASIIIIENAE-HFGLAQLHQLRGRVGRGEEISSCILL 595
              ++I  +AE       L    GR GR     +C+L+
Sbjct: 311 GLELVI--HAELPIDPETLQHRSGRTGRAGRKGTCVLI 346


>gi|50815|emb|CAA26843.1| unnamed protein product [Mus musculus]
 gi|50820|emb|CAA26846.1| unnamed protein product [Mus musculus]
          Length = 370

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 37  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 96

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 97  ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 153

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 154 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 198

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 199 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 258

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 259 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 309


>gi|300854098|ref|YP_003779082.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300434213|gb|ADK13980.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 382

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 142/322 (44%), Gaps = 45/322 (13%)

Query: 299 QGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE-- 353
           + + GSGKTL  ++ +   ++      QA I+AP   LA Q +  IK    N+ I V   
Sbjct: 47  ESETGSGKTLAYIVPIFQKIDFESKDVQAYILAPTHELAIQIHNVIKNLACNSDIPVRSA 106

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRF-- 406
            I GN+   + ++ +E + + + HI++G+       I+  KL      +++VDE  +   
Sbjct: 107 AIIGNV---NIKRQVEILKNEKPHIVVGSTGRILQLIKMKKLKSHNVKIIVVDEADKLLD 163

Query: 407 -----GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIK 459
                 V+  +K T K     ++  +AT   RTL +    + D    K  +K +  + IK
Sbjct: 164 KNNINDVKAIIKTTLKER--QLMFFSATIDDRTLDIARDLMKDYKFIKAEQKTSMNENIK 221

Query: 460 TVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +     R D+++   K+V +   K+A     + +E         +E      ++     
Sbjct: 222 HMCFMCERRDKILILRKLVHILNPKRAIVFVNKPDE---------IEILTEKLKYHKLRA 272

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLA 574
             I+G      ++  ++SFK G   LL+A+ +   G+D+ D   +    I E+ +++   
Sbjct: 273 QAIYGAEDKKVRKRALESFKLGKINLLVASDIAARGLDIDDVDYVFSYDIPEDPDNY--- 329

Query: 575 QLHQLRGRVGRG--EEISSCIL 594
            LH+  GR  R   E  S CI+
Sbjct: 330 -LHR-SGRTARAGKEGTSICII 349


>gi|257082654|ref|ZP_05577015.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
 gi|256990684|gb|EEU77986.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
          Length = 449

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 143/345 (41%), Gaps = 39/345 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT+ QE  I  I +  S       I Q   GSGKT   L+ +   V+      Q VI AP
Sbjct: 25  PTEVQEKLIPIIKKGKSV------IGQSQTGSGKTHTFLLPLMDKVKPTIDEVQIVITAP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q Y+  ++  + +Q  + + +  +    +++ L ++ H Q H++IGT     D 
Sbjct: 79  SRELANQIYQEAQQLARFSQPEIRV-SNFVGGTDKQRQLNKLKHQQPHVVIGTPGRILDM 137

Query: 389 ----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
               +++ +     +VDE         L +   A    +    A  +P  L +       
Sbjct: 138 MNEQALKVHTAFAFVVDE-----ADMTLDMGFLAEVDQI----AGRLPEKLQMLVFSATI 188

Query: 445 ISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
             K+  +P  +K    P+   I P   I E I+   ++ ++GK +  I  Q+        
Sbjct: 189 PEKL--RPFLKKYLENPVIEHIKPKAVISETIDNW-LISTKGKNSNQIIYQLLTIGHPYL 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               +N +  V+      +     +A IHG ++  +++ VM   +N   + ++AT +   
Sbjct: 246 AIVFANTKQTVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GID+   S +I     H     +H++ GR GR     + I LY P
Sbjct: 306 GIDIEGVSHVINAEVPHELDFFIHRV-GRTGRNGLNGTAITLYSP 349


>gi|229550132|ref|ZP_04438857.1| ATP-dependent RNA helicase [Enterococcus faecalis ATCC 29200]
 gi|293383060|ref|ZP_06628978.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|293387787|ref|ZP_06632331.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|307271133|ref|ZP_07552416.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|307273339|ref|ZP_07554584.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|307277485|ref|ZP_07558577.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|307288127|ref|ZP_07568137.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|312900642|ref|ZP_07759939.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|312904121|ref|ZP_07763289.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|312907351|ref|ZP_07766342.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|312909967|ref|ZP_07768815.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|312952381|ref|ZP_07771256.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|229304718|gb|EEN70714.1| ATP-dependent RNA helicase [Enterococcus faecalis ATCC 29200]
 gi|291079725|gb|EFE17089.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|291082857|gb|EFE19820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|306500863|gb|EFM70181.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|306505750|gb|EFM74928.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|306509866|gb|EFM78891.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|306512631|gb|EFM81280.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|310626379|gb|EFQ09662.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|310629765|gb|EFQ13048.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|310632597|gb|EFQ15880.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|311289925|gb|EFQ68481.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|311292123|gb|EFQ70679.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|315027381|gb|EFT39313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
 gi|315033779|gb|EFT45711.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
 gi|315036865|gb|EFT48797.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
 gi|315145689|gb|EFT89705.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
 gi|315147874|gb|EFT91890.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
 gi|315150649|gb|EFT94665.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
 gi|315153344|gb|EFT97360.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
 gi|315155879|gb|EFT99895.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
 gi|315157954|gb|EFU01971.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
 gi|315160224|gb|EFU04241.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
 gi|315164257|gb|EFU08274.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
 gi|315166649|gb|EFU10666.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
 gi|315170067|gb|EFU14084.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
 gi|315174457|gb|EFU18474.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
 gi|315578466|gb|EFU90657.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
 gi|327535018|gb|AEA93852.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           faecalis OG1RF]
          Length = 452

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 145/346 (41%), Gaps = 41/346 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT+ QE  I  I +  S       I Q   GSGKT   L+ +   V+      Q VI AP
Sbjct: 28  PTEVQEKLIPIIKKGKSV------IGQSQTGSGKTHTFLLPLMDKVKPTIDEVQIVITAP 81

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGN-MPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q Y+  ++  + +Q   EI   N +    +++ L ++ H Q H++IGT     D
Sbjct: 82  SRELANQIYQEAQQLARFSQ--PEIRVSNFVGGTDKQRQLNKLKHQQPHVVIGTPGRILD 139

Query: 389 -----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
                +++ +     +VDE         L +   A    +    A  +P  L +      
Sbjct: 140 MMNEQALKVHTAFAFVVDE-----ADMTLDMGFLAEVDQI----AGRLPEKLQMLVFSAT 190

Query: 444 DISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              K+  +P  +K    P+   I P   I E I+   ++ ++GK +  I  Q+       
Sbjct: 191 IPEKL--RPFLKKYLENPVIEHIKPKAVISETIDNW-LISTKGKNSNQIIYQLLTIGHPY 247

Query: 500 ----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F +  +R + + ++       +A IHG ++  +++ VM   +N   + ++AT +  
Sbjct: 248 LAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAA 307

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            GID+   S +I     H     +H++ GR GR     + I LY P
Sbjct: 308 RGIDIEGVSHVINAEVPHELDFFIHRV-GRTGRNGLNGTAITLYSP 352


>gi|228935182|ref|ZP_04098009.1| Primosomal protein N' [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824547|gb|EEM70352.1| Primosomal protein N' [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 767

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 228 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|229197979|ref|ZP_04324693.1| Primosomal protein N' [Bacillus cereus m1293]
 gi|228585458|gb|EEK43562.1| Primosomal protein N' [Bacillus cereus m1293]
          Length = 767

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 228 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|224036248|pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
 gi|224036250|pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
 gi|224036251|pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
 gi|224036253|pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
          Length = 388

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 55  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 114

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 115 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 171

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 172 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 216

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 217 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 276

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 277 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 327


>gi|198462622|ref|XP_002135340.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
 gi|198150906|gb|EDY73967.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
          Length = 537

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 133/312 (42%), Gaps = 43/312 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ----------AVIMAPIGILAQQHYEFIKKYTQNTQII 351
            GSGKTL  +  + A +   GQ          A+++AP   LAQQ       +  +  + 
Sbjct: 149 TGSGKTLAFI--LPAILHINGQQPLQRGEGPIALVLAPTRELAQQIQSVANDFGSSAFVR 206

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR- 405
              + G  P++ +   L+R       III T     D +Q       +   +++DE  R 
Sbjct: 207 NTCVFGGAPRSKQASDLKR----GVEIIIATPGRLLDFLQSGATNLRRCTYLVLDEADRM 262

Query: 406 ----FGVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGD-IDISKITEKPAGRKP 457
               F  Q R  L Q      +L+ +AT  P   R L    LG  I I+  + + +    
Sbjct: 263 LDMGFEPQIRKVLGQIRPDRQILMWSAT-WPKEVRQLAEDFLGSYIQINIGSLELSANHN 321

Query: 458 IKTVIIPINRIDEVIERLKVVLS----EGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           I+  +  +    E   +LK +LS    +      I   +  KK+++    + RF +    
Sbjct: 322 IRQYV-EVCGEHEKSAKLKDLLSHIYDQAHAPGKIIIFVATKKKTD---ELARFINA--- 374

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F  S+  IHG  S +D++SV++ F++G   +L+AT V   G+DV     +I  +      
Sbjct: 375 FGVSVGSIHGDKSQMDRDSVLNDFRSGRANILVATDVAARGLDVDGIKYVINFDYPQSSE 434

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 435 DYIHRI-GRTGR 445


>gi|154271069|ref|XP_001536388.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1]
 gi|160380608|sp|A6RGE3|DBP2_AJECN RecName: Full=ATP-dependent RNA helicase DBP2
 gi|150409611|gb|EDN05055.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1]
          Length = 542

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 145/354 (40%), Gaps = 66/354 (18%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +++AP   LA Q    I K+ ++++I  
Sbjct: 170 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRN 229

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G +P+  + + L R       + I T     D ++  K  L     +++DE  R  
Sbjct: 230 TCVYGGVPKGPQIRDLTR----GVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRML 285

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              F  Q R  ++Q           AT P  +   A       +  ++G +D+S      
Sbjct: 286 DMGFEPQIRKIVSQIRPDRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSAN---- 341

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS--- 509
                        +RI +++E    ++SE +K   +   ++   E+N  S V  F     
Sbjct: 342 -------------HRITQIVE----IVSEFEKRDRMAKHLDRIMEANKHSKVLIFTGTKR 384

Query: 510 --------LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
                   L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D +
Sbjct: 385 VADDITRFLRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRDIT 443

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
            ++  +  +     +H++ GR GR     + I L+    +K +   +++L  ++
Sbjct: 444 HVLNYDYPNNSEDYVHRI-GRTGRAGAKGTAITLFTTDNAKQARDLVAILSESK 496


>gi|170744521|ref|YP_001773176.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168198795|gb|ACA20742.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 499

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 139/349 (39%), Gaps = 49/349 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT----------LVALIAMAAAVEAG 321
           +PT  Q  A+    Q M+ ++ +  I Q   G+GKT          L +      A   G
Sbjct: 24  TPTPIQAQAVP---QAMAGRD-LCGIAQ--TGTGKTAAFALPILHRLASETPQRRAPRRG 77

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHGQ 375
            + ++++P   LA Q  E    Y +       ++ G +    + +AL           G+
Sbjct: 78  CRVLVLSPTRELASQIAESFGDYGKFLPFSTTVVFGGVTIGRQERALANGVDILVATPGR 137

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPR 433
              +I   +L  D+++Y  L+L   D+    G    LK  +T    A   L  +AT +PR
Sbjct: 138 LLDLIDRRSLSLDAVEY--LVLDEADQMLDLGFIHALKRIVTLLPKARQSLFFSAT-MPR 194

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            +   +   +           R P++  + P+    E +E+  V +  G K   +   + 
Sbjct: 195 NIATLAAQYL-----------RDPVQVAVTPVATTAERVEQRVVHVPTGAKQALLATILR 243

Query: 494 EKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +         +  +   +R     E      A IHG  S   +E  + +F+ G C++L+A
Sbjct: 244 DASIDRVLVFTRTKHGADRVVRGLEKAGIGSAAIHGNKSQPQRERALAAFRAGICRVLVA 303

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           T +   GIDV   S ++  +  +   A +H++ GR  R    G  IS C
Sbjct: 304 TDIAARGIDVEGVSHVVNFDLPNVPEAYVHRI-GRTARAGADGLAISFC 351


>gi|55821267|ref|YP_139709.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55823179|ref|YP_141620.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55737252|gb|AAV60894.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55739164|gb|AAV62805.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 360

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 162/370 (43%), Gaps = 62/370 (16%)

Query: 276 SQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAPIGI 332
           + E+AI K++   +++   +L I     G+GKTL  L  +  +++     Q +I+AP   
Sbjct: 19  TTETAIQKELFTPITEGENILGI--SPTGTGKTLAYLFPLLLSLKPKKAQQLLILAPNSE 76

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA Q ++  K++ +   I  ++    +  + +++ +ER+  G   I+IGT     + I+ 
Sbjct: 77  LAGQIFDVTKQWAEPLGITAQLF---LSGSSQKRQIERLKKG-PEILIGTPGRVFELIKL 132

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT---LVLTSLGDIDISKIT 449
            K+ ++ V+        + L  +Q     H ++  +  +PR    + +++   ID   + 
Sbjct: 133 KKIKMMNVNTIVLDEFDELLSDSQY----HFVIKISHHVPRNHQMIYISATNKIDSQNLV 188

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--------SNFR 501
           E         T++  ++      + L  +     K Y+I      + E         NFR
Sbjct: 189 EN--------TIVYDLSN-----QELDTI-----KHYYISVDKRNRVELLRKFSNIPNFR 230

Query: 502 SVVERFNSLHE--------HFTSSIAIIHGRMSDID---KESVMDSFKNGTCKLLIATTV 550
            +V  FNSL +         F  + A+     SDI+   ++ +++ FKN    LL+ T +
Sbjct: 231 GLV-FFNSLSDLGATEERLQFNGASAV--SLASDINVKFRKVILEKFKNHEISLLLGTDL 287

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHP----PLSKNSY 605
           +  GID+ +  ++I  +      A  H+  GR GR G E     L+ HP     L K + 
Sbjct: 288 LARGIDIENLEVVINFDIPRDREAYTHR-SGRTGRMGNEGRVISLVSHPEDLKKLKKFAK 346

Query: 606 TRLSVLKNTE 615
               VLKN E
Sbjct: 347 VSEIVLKNQE 356


>gi|310800687|gb|EFQ35580.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 401

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 136/341 (39%), Gaps = 57/341 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q  AI  + +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 49  SPSAVQSRAIVQVCKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 102

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + + ++ +GQ HI+ GT     D
Sbjct: 103 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVG---EDIRKLDYGQ-HIVSGTPGRVAD 158

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT     L +T
Sbjct: 159 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMT 218

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +       K    P        V I + R +  +E LK      +K  W    + +  ++
Sbjct: 219 T-------KFMTDP--------VRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDT 263

Query: 499 ----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T
Sbjct: 264 LTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLIST 323

Query: 549 TVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 324 DVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 359


>gi|229815661|ref|ZP_04445988.1| hypothetical protein COLINT_02712 [Collinsella intestinalis DSM
           13280]
 gi|229808891|gb|EEP44666.1| hypothetical protein COLINT_02712 [Collinsella intestinalis DSM
           13280]
          Length = 334

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           + A IHG  S   +E  + +F++G C +L+AT V+  GID+ D   ++  +     +  +
Sbjct: 5   TCAAIHGDRSQAQRERALKAFRSGECDVLVATDVLARGIDISDVRYVVNFDVPEDPVDYI 64

Query: 577 HQLRGRVGR-GEE 588
           H++ GR GR GEE
Sbjct: 65  HRI-GRTGRAGEE 76


>gi|162146723|ref|YP_001601182.1| cold-shock DEAD box protein A [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161785298|emb|CAP54844.1| putative cold-shock DEAD box protein A [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 596

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 143/362 (39%), Gaps = 45/362 (12%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIM 327
           + + ++  + D++   R L ++    GSGKT+   +AMA  +  G +         AVI+
Sbjct: 21  EPTPVQKAVLDVAADGRDL-LVSAQTGSGKTVAFGLAMADTLLGGAERFGPAGAPLAVII 79

Query: 328 APIGILAQQ-HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           AP   LA Q   E    Y      IV  I G M      +ALE      AHI++GT    
Sbjct: 80  APTRELAMQVQRELSWLYAPAGARIVSCI-GGMDARREARALEI----GAHIVVGTPGRL 134

Query: 387 QDSIQYYKLIL-----VIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLV 436
            D     +L+L     V++DE       G +  L+  L         LL +AT       
Sbjct: 135 CDHQSRGRLVLSELRVVVLDEADEMLDLGFRDELQQLLDAMPDTRRTLLFSATIAKDIAT 194

Query: 437 LTSLGDIDISKITEKPAGRK----PIKTVII-PINRIDEVIERLKVVLSEGKKAYWICPQ 491
           L      D  +I      R+      + V+  P   I  V+  L+   ++   A   C  
Sbjct: 195 LARRYQRDALRIDTLSGARQHADITYRAVMADPREIIPAVVNILR--FTDSPTAMVFC-- 250

Query: 492 IEEKKESNFRSVVERF-NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                    R +V     +L E   SS+A+  G +   ++   ++S + G  ++ +AT V
Sbjct: 251 -------ATRELVRHMQGALLERGFSSVAL-SGELGQSERTRAIESLRTGQARVCVATDV 302

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GID+   S+++  +        LH+  GR GR      C L+    + + +   L++
Sbjct: 303 AARGIDIPALSLVVHASLPTDSATLLHR-SGRTGRAGRKGVCALIVPVSMRRRAERLLTM 361

Query: 611 LK 612
            K
Sbjct: 362 AK 363


>gi|158424747|ref|YP_001526039.1| putative DEAD-box protein [Azorhizobium caulinodans ORS 571]
 gi|158331636|dbj|BAF89121.1| putative DEAD-box protein [Azorhizobium caulinodans ORS 571]
          Length = 678

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 143/355 (40%), Gaps = 56/355 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +P +S  +A +   +DM        ++    GSGKT+   +A+   +    +        
Sbjct: 113 TPVQSAVTAPEATGRDM--------LVSAQTGSGKTVAYGLAVGQTLLGSDERLPAPGAP 164

Query: 324 -AVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+++AP   LA Q H E    Y +    IV  + G  P   +R+  +      AH+++G
Sbjct: 165 LALVIAPTRELALQVHKELAWLYAEAGGRIVACVGGMDPLREKRQLQD-----GAHVVVG 219

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPI 431
           T    +D ++  +L        +L   DE    G ++ L+    +T      LL +AT +
Sbjct: 220 TPGRLRDHLERGRLDMSQLAAVVLDEADEMLDLGFREDLEFILDSTPGKRQTLLFSAT-M 278

Query: 432 PRTLV-LTSLGDIDISKITEKPAGRK------PIKTVIIPINRIDEVIERLKVVLSEGKK 484
           PR +  L      D  +I  + AG+K        + V +    I+  +  L +   E   
Sbjct: 279 PRDIAALARQYQHDALRI--EVAGQKVGHADIEYRAVRVSPREIEHAVVNL-LRFFEAPG 335

Query: 485 AYWICPQIEEKKESNFRSVVERFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           A   C         N R  V    + L E   S++A+  G +   ++   + + ++G  +
Sbjct: 336 AIVFC---------NTREAVRHLTATLQERGFSAVAL-SGELGQNERNLALQALRDGRAR 385

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + +AT V   GID+    ++I     H   +  H+  GR GR       +LL  P
Sbjct: 386 VCVATDVAARGIDLPGLGLVIHAELPHDAESLQHR-SGRTGRAGRKGVSVLLVPP 439


>gi|156057455|ref|XP_001594651.1| eukaryotic initiation factor 4A [Sclerotinia sclerotiorum 1980]
 gi|160395529|sp|A7EGL7|IF4A_SCLS1 RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|154702244|gb|EDO01983.1| eukaryotic initiation factor 4A [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 398

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 130/291 (44%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +        +   
Sbjct: 66  IAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECH 125

Query: 354 IITGNMPQAHRRKALERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
              G        KAL+          G+ H +I    L  DS++ +  +L   DE    G
Sbjct: 126 ACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDSMKMF--VLDEADEMLSRG 183

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P++   I
Sbjct: 184 FTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPVR---I 226

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-------FRSVVERFNSLHEHFTS 516
            + + +  +E +K      +K  W    + +  E+        F +   + + L +  T+
Sbjct: 227 LVKKAELTLEGIKQFYIAVEKEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTA 286

Query: 517 ---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 287 RDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 337


>gi|291165173|gb|ADD81191.1| vasa [Euthynnus affinis]
          Length = 640

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/334 (19%), Positives = 137/334 (41%), Gaps = 58/334 (17%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+ +   + A G            +A+I+AP   L  Q Y   +K+   T 
Sbjct: 250 TGSGKTAAFLLPILQQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTC 309

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   ++ G +   H+ + + R      +++ GT     D I   K+ L     +++DE  
Sbjct: 310 VRPVVVYGGVSTGHQIREISR----GCNVVCGTPGRLLDMIGRGKVGLTKLRYLVLDEAD 365

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK------- 451
           R        +      P +  + ++P +P     +TL+ ++    DI ++          
Sbjct: 366 R--------MLDMGFEPDMRRLVSSPGMPSKENRQTLMFSATYPEDIQRLAADFLKTDYL 417

Query: 452 -------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
                        ++   I + +  +  + L ++ + G +   +   +E K++++F   +
Sbjct: 418 FLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTTGMERTMVF--VETKRQADF---I 472

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             F    +  T+SI   HG     ++E  +  F++G C +L+AT+V   G+D+ D   ++
Sbjct: 473 ATFLCQEKVPTTSI---HGDREQREREQALADFRSGKCPVLVATSVAARGLDIPDVQHVV 529

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             +  +     +H++ GR GR       +  Y P
Sbjct: 530 NFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFYDP 562


>gi|295691142|ref|YP_003594835.1| primosomal protein N' [Caulobacter segnis ATCC 21756]
 gi|295433045|gb|ADG12217.1| primosomal protein N' [Caulobacter segnis ATCC 21756]
          Length = 719

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 20/147 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV-EAGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           +L G  GSGKT V L A+A A+ +   Q +++ P   L Q     + ++ Q    +  E 
Sbjct: 210 LLDGVTGSGKTEVYLEAVAEALKDPEAQVLVLLPEIALTQA---VMARFEQRFGAVPAEW 266

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            +G  P   RR+  E +A+G A I++G   ALF   + Y KL L++VDE+H    +Q   
Sbjct: 267 HSGVSPP-RRRQVWEAVANGDARIVVGARSALF---LPYRKLRLLVVDEEHDGSFKQEEG 322

Query: 414 LTQKA----------TAPHVLLMTATP 430
              +A              VLL +ATP
Sbjct: 323 FIYQARDLAVARAKIEGASVLLASATP 349


>gi|229123382|ref|ZP_04252586.1| Primosomal protein N' [Bacillus cereus 95/8201]
 gi|228660158|gb|EEL15794.1| Primosomal protein N' [Bacillus cereus 95/8201]
          Length = 767

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 228 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|227893307|ref|ZP_04011112.1| primosomal replication factor [Lactobacillus ultunensis DSM 16047]
 gi|227864887|gb|EEJ72308.1| primosomal replication factor [Lactobacillus ultunensis DSM 16047]
          Length = 798

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 13/138 (9%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q++A+  I Q + Q+     +L+G  GSGKT V L A++ A+  G  A+++ P I +  Q
Sbjct: 266 QQNALDQIAQKIDQQKSKTFLLEGITGSGKTEVYLHAISEALAQGRNALMLVPEISLTPQ 325

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ--DSIQY 392
              +   ++ Q     V ++   + +  +     RI  G+  +++G   A+F   D+I  
Sbjct: 326 MVRQVRARFGQE----VAVLHSALSEGEKYDEWRRIRRGETKVVVGARSAVFAPLDNIG- 380

Query: 393 YKLILVIVDEQHRFGVQQ 410
               L+++DE+H    +Q
Sbjct: 381 ----LIVIDEEHESSYKQ 394


>gi|261202786|ref|XP_002628607.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis
           SLH14081]
 gi|225556973|gb|EEH05260.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus G186AR]
 gi|239590704|gb|EEQ73285.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis
           SLH14081]
 gi|239612419|gb|EEQ89406.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis ER-3]
 gi|240277518|gb|EER41026.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H143]
 gi|325093598|gb|EGC46908.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H88]
 gi|327355221|gb|EGE84078.1| ATP-dependent RNA helicase FAL1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 399

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 147/354 (41%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVLRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + + ++ HGQ H++ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVG---EDIRKLDHGQ-HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT +P      
Sbjct: 157 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT-LP------ 209

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E 
Sbjct: 210 ----YDVLDMTTKFMT-DPVRILV----------KRDELTL-EGLKQYFIAV---EKEEW 250

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 251 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 308

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 309 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 357


>gi|206975837|ref|ZP_03236748.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|206745931|gb|EDZ57327.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
          Length = 481

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 134/326 (41%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID-ISKITEKPAGRKPIKTVI 462
             F  Q    + +  T    +L +AT +P         D++ +S+          IK   
Sbjct: 161 MGFIDQVEAIIDELPTNRMTMLFSAT-LPE--------DVERLSRTYMNAPTHIEIKVAG 211

Query: 463 IPINRI---------DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           I  ++I         DE +  LK V + E   +  I  + +E  +  +R + +R N   +
Sbjct: 212 ITTDKIEHTLFEAIEDEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-KRANYPCD 270

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                   IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +     
Sbjct: 271 K-------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEK 323

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
            + +H+  GR GR       I    P
Sbjct: 324 ESYVHRT-GRTGRAGNSGKAITFITP 348


>gi|254369546|ref|ZP_04985557.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122500|gb|EDO66635.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 569

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 47/334 (14%)

Query: 299 QGDVGSGKTLVALIAM-----AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           Q   G+GKT    + +      A+ +   Q +++AP   LA Q  E  + + +N   + V
Sbjct: 50  QAQTGTGKTAAFALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDV 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQH 404
             I G      + +AL++       +++GT     D I+           L+L   DE  
Sbjct: 110 ACIYGGQEYGSQIRALKQ----GVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEML 165

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           R G    +K  L+  +     LL +AT IP           DI+ I E+   R P K  +
Sbjct: 166 RMGFIDDVKFVLSHVSEQCQRLLFSAT-IP----------TDIADIIEEYL-RNPCKIQV 213

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--------RSVVERFNSLHEHF 514
               +    + + K ++ +G +      ++ E +E++          S +E  ++L +  
Sbjct: 214 KAKTKTANTVTQ-KFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTSTIEVADNL-KAL 271

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A I+G M    +E ++D F++    +L+AT V+  GID+   S +I  +  +    
Sbjct: 272 GYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPNDTDT 331

Query: 575 QLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTR 607
            +H++ GR GR G E +S  L+   PL +  + R
Sbjct: 332 YVHRI-GRTGRAGREGTSISLV---PLKEMRFLR 361


>gi|89897978|ref|YP_515088.1| primosome assembly protein PriA [Chlamydophila felis Fe/C-56]
 gi|89331350|dbj|BAE80943.1| replication factor Y superfamily II helicase [Chlamydophila felis
           Fe/C-56]
          Length = 749

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 85/208 (40%), Gaps = 18/208 (8%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P  P   Q+SA+  I   +S  N    +L G  GSGKT V   A+  A + G  A+++ P
Sbjct: 209 PLHP--QQKSAVDKISASLSVGNFQTHLLFGVTGSGKTEVYFQAIHEARKLGKSAILLVP 266

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L        K +       V I+   +  + R K     + G  +IIIG  +     
Sbjct: 267 EIALTIPTVTLFKAHFGKE---VGILHHKLTDSDRNKTWRAASRGDINIIIGPRSALFCP 323

Query: 390 IQYYKLILVIVDEQHRFGVQQRLK-----------LTQKATAPHVLLMTATPIPRTLVLT 438
           +Q   L L+IVDE+H    +Q              +  K     V+L +ATP   +    
Sbjct: 324 VQ--NLGLIIVDEEHDPAYKQSESHPCYHARDVAVMRGKLANATVILGSATPSLESYANA 381

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN 466
             G   +S+++ + A   P K  ++ +N
Sbjct: 382 LSGKYILSELSTRAAAALPAKVSLVDMN 409


>gi|330904451|gb|EGH35023.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 61

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 29/45 (64%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY
Sbjct: 3   MDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHY 47


>gi|329766732|ref|ZP_08258275.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329136987|gb|EGG41280.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 711

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 141/308 (45%), Gaps = 39/308 (12%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ-----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            GSGKT  ++I + + V+   +      + + P+  L +  +  I KY Q+ ++ +EI  
Sbjct: 53  TGSGKTECSVIPVFSLVKKSKKIGKIKVLYITPLRALNRDVFRRITKYAQSNELSIEIRH 112

Query: 357 GNMPQAHRRKALER-----IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF-GVQQ 410
           G+  Q  RRK  E      I   +  +I+ T     +++   +L  +I+DE H   G ++
Sbjct: 113 GDTTQTARRKISENPPDVLITTPETLVILLTQIKMLNALS--ELEWIIIDEVHELLGSER 170

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS-----------KITEKPAGRK-PI 458
             +L+   +   + L +  P+ +  +  ++G+I+ +           +I    + RK  +
Sbjct: 171 GSQLS--LSVERLQLNSKFPLTKIGLSATVGNIEEAGKFVVGTKRKCQIIRDTSIRKYDV 228

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +   +P   I +V E++   + E      +      + E+ F + +     L E  T SI
Sbjct: 229 EVKFVP-GTISDVAEKIIEYVLELNLDSPVLLFTNTRGEAEFLASM-----LKEKSTISI 282

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA-QLH 577
            + HG +S   +E    S + GT  +++ T+ +E+G+D+    ++I     H+G   Q+ 
Sbjct: 283 ELHHGSLSKEVREDTELSLREGTRGIVVCTSSLELGLDIGAIELVI-----HYGSPRQVS 337

Query: 578 QLRGRVGR 585
           +L  R+GR
Sbjct: 338 KLVQRIGR 345


>gi|293400666|ref|ZP_06644811.1| ATP-dependent RNA helicase, DEAD/DEAH box family
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305692|gb|EFE46936.1| ATP-dependent RNA helicase, DEAD/DEAH box family
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 467

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 133/312 (42%), Gaps = 30/312 (9%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITG 357
            G+GKT   LI +   V++     QAVI AP   LA Q Y+  +K ++ + ++++ +ITG
Sbjct: 62  TGTGKTHAFLIPIMEKVDSSKPCVQAVITAPTRELALQIYQRCEKMSEADPKLVIRLITG 121

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI------LVIVDEQH---RFGV 408
            + ++   + L+     Q HI++GT    +D     +++      +++VDE      FG 
Sbjct: 122 GIEKSRMIEQLK----AQPHIVVGTPGRIKDLFLNEQVLRVDTADIMVVDEADMTLEFGF 177

Query: 409 QQRLKLTQKATAPHVLLMT-ATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIP 464
            + +          + +M+ +  IP+ L L     +D     +I E+ A    I+ +++P
Sbjct: 178 LEDVDAIAGKMRKDLQMMSFSATIPQELRLFLKKYMDRPQTVQIEEQSAFHPKIQHILVP 237

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
           +       + L+++ S      ++C        +N RS      S        +  +HG 
Sbjct: 238 VQHKTYAEKVLEILPS---FTPYVCLIF-----ANTRSEAANVASNMRDAGYGVIELHGD 289

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           ++  ++   M    N     ++AT +   GID+   S +I           +H+  GR G
Sbjct: 290 LTPRERTKAMKDLSNLQKSYVVATDIAARGIDIEGISHVISMGFPKELDYYIHR-SGRTG 348

Query: 585 RGEEISSCILLY 596
           R      C  LY
Sbjct: 349 RAGHEGICYALY 360


>gi|282892035|ref|ZP_06300512.1| hypothetical protein pah_c205o067 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498077|gb|EFB40419.1| hypothetical protein pah_c205o067 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 746

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 18/182 (9%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           I ++ L   P   +  Q+ A   I   +        +L G  GSGKT V L A+  A++ 
Sbjct: 195 IGEEYLLTKPKILSAEQQEAFTKIAHSLEAGIFQTHLLYGITGSGKTEVYLQAIEKALQM 254

Query: 321 GGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              A+++ P I + AQ    F  ++  N    + I+   +    R     +I  G+A I+
Sbjct: 255 QKSAIMLVPEISLTAQTIERFKSRFPDN----IAILHHRLSHGERFDEWHKIRRGEARIV 310

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK-----------LTQKATAPHVLLMTA 428
           IG  +     +    L LVIVDE+H    +Q+ +           +  K     VLL +A
Sbjct: 311 IGARSAVFSPVP--NLGLVIVDEEHEQSYKQQEESPCYHARDIAVMRGKIAQATVLLGSA 368

Query: 429 TP 430
           TP
Sbjct: 369 TP 370


>gi|281355042|ref|ZP_06241536.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281317922|gb|EFB01942.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 627

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 140/334 (41%), Gaps = 38/334 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQI-IV 352
           I Q   G+GKT    I +    E GG   QA+I++P   L+ Q  E +       ++ I 
Sbjct: 47  IGQAQTGTGKTAAFGIPVIELCEGGGKKPQALILSPTRELSIQIAEELNSLKGKRKLRIA 106

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQH 404
               G M +      L+R+  G   ++IGT     D ++  KL        +L   DE  
Sbjct: 107 PFYGGQMIEIQ----LQRLRDG-IDVVIGTPGRIMDLMERGKLDFSELKFAVLDEADEML 161

Query: 405 RFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKT 460
             G  + ++    AT     +L+ +AT  P  L +    +   +  +        +  + 
Sbjct: 162 DMGFVEDIEKILGATNSDKRMLMFSATMPPEILKIAERFMRSYETVRAESAQLNTELTEQ 221

Query: 461 VIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +   + R D  E + R+ + + +   A   C     +  ++   +VE+   L  H    +
Sbjct: 222 IYFEVRREDKFEALSRI-IDVEQDLYALVFC-----RTRNDVDELVEKLK-LRGH---RV 271

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG ++ + +  V++ FK+   K+LIAT V   GIDV D + +I  +        +H+
Sbjct: 272 EALHGDIAQMQRTRVINQFKDKKFKILIATDVAARGIDVNDLTHVINYSMPQGTETYVHR 331

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           + GR GR  +  + I    P      Y +L++++
Sbjct: 332 I-GRTGRAGKNGTAITFVTPA----EYRKLTMIQ 360


>gi|228916505|ref|ZP_04080071.1| Primosomal protein N' [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228928916|ref|ZP_04091948.1| Primosomal protein N' [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229186108|ref|ZP_04313277.1| Primosomal protein N' [Bacillus cereus BGSC 6E1]
 gi|228597284|gb|EEK54935.1| Primosomal protein N' [Bacillus cereus BGSC 6E1]
 gi|228830723|gb|EEM76328.1| Primosomal protein N' [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843084|gb|EEM88166.1| Primosomal protein N' [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 767

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 228 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|148539566|ref|NP_001091916.1| eukaryotic initiation factor 4a [Strongylocentrotus purpuratus]
 gi|126722145|emb|CAM57102.1| eukaryotic initiation factor 4a [Strongylocentrotus purpuratus]
          Length = 426

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 128/301 (42%), Gaps = 62/301 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +   E   QA+++AP   LAQQ ++ I       ++   
Sbjct: 94  IAQAQSGTGKTATFAISILQQLNVEEKQCQALVLAPTRELAQQIHKVIVALGDYLEVKCH 153

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHR--- 405
              G     + R  +  ++ G   +I+GT     D ++      +K+ + ++DE      
Sbjct: 154 PCIGG---TNVRDDMNLLSEG-VQVIVGTPGRVFDMLKRKVLSPFKICMFVLDEADEMLS 209

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             F  Q     +   +   V+L++AT +P          +D+ ++T+K   R PI+ ++ 
Sbjct: 210 RGFKDQIYDVFSWLPSEVQVVLLSAT-MP----------VDVLEVTKKFM-RDPIRILVK 257

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN--------------- 508
                    E L +   +G K ++I  + EE K      + E                  
Sbjct: 258 K--------EELSL---DGIKQFYIAVEKEEWKLDTLCDLYETLTITQAVIFCNTRRKVD 306

Query: 509 ----SLHEH-FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
                +HE  FT  ++I+H  M   +++ +M  F+ G+ ++LI T ++  GIDV   S++
Sbjct: 307 WLCQKMHERDFT--VSIMHRDMDQKERDKIMKEFRTGSSRVLICTDLLARGIDVQQVSLV 364

Query: 564 I 564
           I
Sbjct: 365 I 365


>gi|119178046|ref|XP_001240731.1| conserved hypothetical protein [Coccidioides immitis RS]
 gi|118575172|sp|Q1DP69|DBP2_COCIM RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 542

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 143/346 (41%), Gaps = 51/346 (14%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +++AP   LA Q    I K+ ++++I  
Sbjct: 170 ETGSGKTLTYCLPAIVHINAQPLLGPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRN 229

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G +P+  + + L R       + I T     D ++  K  L     +++DE  R  
Sbjct: 230 TCVYGGVPRGPQIRDLSR----GVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRML 285

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
              F  Q R  + Q           AT P  +   A       +   +G  D+S   +IT
Sbjct: 286 DMGFEPQIRKIIGQIRPDRQTCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRIT 345

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +       I  ++    + D +I  L+ ++ + K    I    +   +      + RF  
Sbjct: 346 Q-------IVEIVSDFEKRDRMINHLERIMDDKKSKILIFTGTKRVADD-----ITRF-- 391

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D + ++  +  
Sbjct: 392 LRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYP 450

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +     +H++ GR GR     + I L+    +K +   +++L  ++
Sbjct: 451 NNSEDYVHRI-GRTGRAGAKGTAITLFTTDNAKQARDLVNILTESK 495


>gi|330828434|ref|YP_004391386.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
 gi|328803570|gb|AEB48769.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
           B565]
          Length = 416

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 128/294 (43%), Gaps = 37/294 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LA Q  E + +Y Q T +    + G +  A +  AL+        ++I T
Sbjct: 79  RALVLVPTRELAVQVAESVARYGQGTGLTSTQVYGGVSIAAQVDALKN----GVDLLIAT 134

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLV 436
                D ++   L L     ++ DE  R      +    + TA    L+   P+ R TL+
Sbjct: 135 PGRLLDHLRQGALSLDSLRHLVFDEADRM---LDMGFMDEITA----LLKQLPVDRQTLL 187

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKVVLSEGKKAY--------- 486
            ++  D ++  ++ K   R P    + P N    EV +R+  V S+ K A          
Sbjct: 188 FSATCDDNLFALS-KVLLRDPELIEVAPRNTTAAEVEQRVYTVDSDRKLALVEHMLKVKG 246

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           W    I  +       + ++   L +   +++A  HG +S   +E V+  F+ GT + L+
Sbjct: 247 WAPALIFSRTRQGADKLAQQ---LGKSGINALAF-HGDLSQSAREKVLLEFRAGTLQALV 302

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQ--LHQLRGRVGRGEEISSCILLYHP 598
           AT V   G+D+ D + +I  N E   +A+  +H++ GR GR       I L+ P
Sbjct: 303 ATDVAARGLDITDLNYVI--NLEFPFVAEDYVHRI-GRTGRAGNKGLAITLFSP 353


>gi|326505994|dbj|BAJ91236.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 685

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 97/435 (22%), Positives = 171/435 (39%), Gaps = 94/435 (21%)

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG-------------KI 261
           A + +WT P       +E L G  +  +    F K   IP+   G             K+
Sbjct: 151 APNQDWTKPLPPDERLEEELFGNRSTGI---NFNKYEDIPVEATGEDIPSHINTFDDIKL 207

Query: 262 AQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
              I  NI  +    PT  Q+ AI  I+       R   +     GSGKT   L+ +   
Sbjct: 208 TDIIRMNIALTRYDTPTPVQKYAIPIII------GRRDVMACAQTGSGKTAAFLVPILNQ 261

Query: 318 VEAGGQA-----------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           +   G A                 +I+AP   LA Q Y+  KK+   +++   ++ G   
Sbjct: 262 IYEKGPAAYNVGPKLQSRRKYPLGLILAPTRELATQIYDEAKKFAYRSRVRPCVVYGG-- 319

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-----FGVQQ 410
            +H    +  +  G  H+++ T     D ++  K+ L     +++DE  R     F  Q 
Sbjct: 320 -SHVMDQIRDLEQG-CHLLVATPGRLVDMLERGKIGLDFCRYLVLDEADRMLDMGFETQI 377

Query: 411 RLKLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           R ++ +K + P       L+ +AT  P+ + + +   +D                + + I
Sbjct: 378 R-RIVEKDSMPPPGDRQTLMFSAT-FPKEIQMLARDFLD--------------NYIFLAI 421

Query: 466 NRIDEVIERL--KVVLSE--GKKAYWI-----CPQIEEKKESNFRSVVER---FNSLHEH 513
            R+    E +  K+V  E   K++Y +      P   +  ES     VE     +SL E 
Sbjct: 422 GRVGSTSENITQKIVWVEDRNKRSYLLDLLNATPIRSQPAESLILVFVETKKGADSLEEF 481

Query: 514 FTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             S+   +  IHG  +  ++E  + SF++G   +L+AT V   G+D+   + +I  +   
Sbjct: 482 LYSNGYPVTSIHGDRTQREREDALKSFRSGNTPVLVATAVAARGLDIPHVTHVINYDLPS 541

Query: 571 FGLAQLHQLRGRVGR 585
                +H++ GR GR
Sbjct: 542 DVEEYVHRI-GRTGR 555


>gi|321314473|ref|YP_004206760.1| putative ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|320020747|gb|ADV95733.1| putative ATP-dependent RNA helicase [Bacillus subtilis BSn5]
          Length = 376

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 148/340 (43%), Gaps = 39/340 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +PT  QE A + I   M  K+    I +   G+GKTL   + +   +   +   QAVI+A
Sbjct: 26  TPTPVQEQAAQLI---MDGKDV---IAESPTGTGKTLAYALPVLERIKPEQKHPQAVILA 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L  Q ++ I+ +   +++    + G    A+ +K +E++     HII+GT     +
Sbjct: 80  PSRELVMQIFQVIQDWKAGSELRAASLIGG---ANVKKQVEKLKK-HPHIIVGTPGRVFE 135

Query: 389 SIQYYKLIL-----VIVDE-------QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL- 435
            I+  KL +     +++DE       +HR  ++Q +K T +     +L  +AT    T  
Sbjct: 136 LIKAKKLKMHEVKTIVLDEADQLILPEHRETIKQIIKTTLRDR--QLLCFSATLKKETED 193

Query: 436 VLTSLG-DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           VL  L  + ++ K+    A    +K   +  ++ D+V    K+   EG +A      I  
Sbjct: 194 VLRELAQEPEVLKVQRSKAEAGKVKHQYLICDQRDKVKLLQKLSRLEGMQALVFVRDI-- 251

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N     E+    H      + ++H     +++  ++ +F++G   LL+AT +   G
Sbjct: 252 ---GNLSVYAEKLAYHH----VELGVLHSEAKKMERAKIISAFEDGEFPLLLATDIAARG 304

Query: 555 IDVVDASIIIIEN-AEHFGLAQLHQLRGRVGRGEEISSCI 593
           +D+ +   +I  +  +  G        GR G+   + S +
Sbjct: 305 LDIENLPYVIHADIPDEDGYVHRSGRTGRAGKEGNVLSLV 344


>gi|228909693|ref|ZP_04073516.1| Primosomal protein N' [Bacillus thuringiensis IBL 200]
 gi|228849982|gb|EEM94813.1| Primosomal protein N' [Bacillus thuringiensis IBL 200]
          Length = 767

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 228 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|164687249|ref|ZP_02211277.1| hypothetical protein CLOBAR_00890 [Clostridium bartlettii DSM
           16795]
 gi|164603673|gb|EDQ97138.1| hypothetical protein CLOBAR_00890 [Clostridium bartlettii DSM
           16795]
          Length = 371

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 146/348 (41%), Gaps = 51/348 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV---IMA 328
           +PT  QE +I  I      KN    + Q   G+GKTL  LI +  ++    Q +   I+A
Sbjct: 23  TPTPIQEESILHI------KNNKDILAQSQTGTGKTLAFLIPIFDSISPKNQNIQTLILA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q Y   +K  ++  I V    G      +   L+R       ++I T     D
Sbjct: 77  PTRELAIQIYNEAEKLNKDKNINVLAAYGGKDIKSQLNKLKR----NIQLVIATPGRLLD 132

Query: 389 -----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
                SI   KL  +++DE  +    G +  ++   K T             +TL  ++ 
Sbjct: 133 HLDRKSIDLSKLNTLVLDEADQMILMGFKNEIEAIIKETNKK---------RQTLCFSAT 183

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D  + K+  +   + P++  I       E I++  V  ++  K   +C  ++E  ++ F
Sbjct: 184 LDSQVKKLAYRYM-KDPVEVTIKSKEITLETIKQEVVETTDRHKQEALCKVLDE--DNPF 240

Query: 501 RSVV-----ERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            +++      R ++L E       +   +H  +    +E ++ SF+    + LIAT V  
Sbjct: 241 MAIIFCRTKRRVDALDEALAVKGYNCEKLHSDIPQAKRERIIKSFRKADLQYLIATDVAS 300

Query: 553 VGIDVVDASII----IIENAEHFGLAQLHQLRGRVGR-GEEISSCILL 595
            G+D+   + I    I E +E +    +H++ GR GR G +  +C+ +
Sbjct: 301 RGLDITGITHIYNYDIPETSEDY----IHRI-GRTGRIGNDGYTCMFV 343


>gi|32401300|gb|AAP80822.1| transcription-repair coupling factor [Griffithsia japonica]
          Length = 174

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALI 312
           P  V+ +  ++      FS T  Q+ A + I  DMS++   M R+L GDVG GKT VA+ 
Sbjct: 103 PFEVDEEAERQFFSACEFSLTADQQEATRHIFHDMSERRSPMDRLLCGDVGIGKTEVAIR 162

Query: 313 AMAAAVEAGGQ 323
           A   AV AG Q
Sbjct: 163 AAFRAVRAGKQ 173


>gi|56415939|ref|YP_153014.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364866|ref|YP_002144503.1| primosome assembly protein PriA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56130196|gb|AAV79702.1| primosomal protein replication factor [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096343|emb|CAR61947.1| primosomal protein replication factor [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 732

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH--RFGVQQRL 412
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H   +  Q+  
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDRSYKQQEGW 333

Query: 413 KLTQKATAPH--------VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +   +  A +        ++L +ATP   TL         + ++T +    +P
Sbjct: 334 RYHARDLAVYRAHSEQIPIILGSATPALETLCNVRQKKYRMLRLTRRAGNARP 386


>gi|325273395|ref|ZP_08139652.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324101468|gb|EGB99057.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 426

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 155/355 (43%), Gaps = 58/355 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAVEAGG---QAVI 326
           PT  Q +AI   LQ      R LR+     GSGKT   ++ L+     ++ G    +++I
Sbjct: 36  PTPVQAAAIPLALQ-----GRDLRV-TAQTGSGKTAAFVLPLLNRLVDLKGGRVEIRSLI 89

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + ++ ++Q T I   ++TG      +   L ++      ++IGT    
Sbjct: 90  LLPTRELAQQTLKQVQLFSQFTYIKAGLVTGGEDFKEQAAMLRKVPD----VLIGTPGRL 145

Query: 387 QDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATA--PHVLLMTATPIPRTLV 436
            + +    L L     +I+DE  R    G  + ++   K        LL +AT       
Sbjct: 146 LEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGG---- 201

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE--RLKVVLSEGKK-----AYWIC 489
             +L DI I K+ + P          + +N + ++ E  R +++ ++  +       W+ 
Sbjct: 202 -AALRDI-IGKVLKDPEH--------LMLNSVSQLAEGTRQQIITADHDQHKEQIVQWLL 251

Query: 490 PQIEEKKE---SNFRSVVERFNSLHEHFTSSIA---IIHGRMSDIDKESVMDSFKNGTCK 543
                 K    +N R++ +R   ++ H  +      ++HG     D++  ++ FK G+ K
Sbjct: 252 ANETFDKAIVFTNTRALADR---IYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSK 308

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
           +L+AT V   G+D+    ++I  +    G   +H++ GR GR G E  +  L+ H
Sbjct: 309 VLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRV-GRTGRAGGEGLAISLITH 362


>gi|315924965|ref|ZP_07921182.1| DEAD/DEAH family ATP-dependent RNA helicase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621864|gb|EFV01828.1| DEAD/DEAH family ATP-dependent RNA helicase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 550

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 126/303 (41%), Gaps = 35/303 (11%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITG 357
            G+GKTL   I     V+      Q +I+ P   LA Q   EF K  T +  + +  + G
Sbjct: 52  TGTGKTLAFAIPAVQKVDPAAKRPQVLILLPTRELALQVAGEFEKLLTCSEGVAIAAVFG 111

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRL 412
                 + +A +      A I++GT     D     ++++  + +V++DE       + L
Sbjct: 112 GASMPKQIRAFK----SGAQIVVGTPGRIMDHLRRGTLRFDAMRMVVLDE-----ADEML 162

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            +  +     +L     P+ +T + ++     I+K+ E    R P    I P N +   I
Sbjct: 163 DMGFREDIEAILDRVDHPV-QTALFSATMPAPITKMAELYQ-RDPETVAIAPKNMVAAGI 220

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
           E     + +G+K   +   +   +        N +  V+   +  +    S   IHG M 
Sbjct: 221 EERYYSIVDGQKFEALTRLLAVYRPRRALIFCNTKKYVDELTNALQDRGYSADKIHGDMR 280

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGR 582
              + +V+  F  G   +L+AT V   GIDV D  I+    + +N E++    +H++ GR
Sbjct: 281 QEARLAVLRRFAEGRLAILVATDVAARGIDVDDVDIVFNYDVPDNEEYY----VHRI-GR 335

Query: 583 VGR 585
            GR
Sbjct: 336 TGR 338


>gi|229157444|ref|ZP_04285522.1| Primosomal protein N' [Bacillus cereus ATCC 4342]
 gi|228626171|gb|EEK82920.1| Primosomal protein N' [Bacillus cereus ATCC 4342]
          Length = 767

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 228 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++     ++   ++        RK L +    +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQVAVLHSALSVGEKYDEWRKILRK----EVKVVVGARSAVFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|254506632|ref|ZP_05118773.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
 gi|219550505|gb|EED27489.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
          Length = 458

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 129/318 (40%), Gaps = 53/318 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I QG  GSGKT    + + + +       Q +++ P   LA Q  + I+   +    I V
Sbjct: 44  IGQGKTGSGKTATFSLGLLSNLNVSRFRVQTLVLCPTRELADQVAKEIRTLARGIHNIKV 103

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G MP   +  +LE   HG AHI++GT     D +   ++ L     +++DE  R  
Sbjct: 104 LTLCGGMPMGPQIGSLE---HG-AHILVGTPGRILDHMSKGRISLKELNTLVLDEADRML 159

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEK------------ 451
             G ++ +            ++ A P  R TL+ ++    +I  ++EK            
Sbjct: 160 DMGFEEAIDT----------IIEAAPSKRQTLLFSATFPDNIESLSEKVMVAPEMVKVES 209

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNS 509
              +  I+     +N  +E  + L+ +L   K   +   C         N +  V+    
Sbjct: 210 THQKSTIEQRFFKLNSTEERDDALEALLLTHKPESSVVFC---------NTKKEVQNVTD 260

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
              H   S+  +HG M   ++E  +  F N +  +L+AT V   G+DV +   +   N E
Sbjct: 261 ELSHRGFSVVELHGDMEQREREQALTMFANKSISILVATDVAARGLDVDNLDAVF--NFE 318

Query: 570 HFGLAQLHQLR-GRVGRG 586
                ++H  R GR GR 
Sbjct: 319 LSRDPEVHVHRIGRTGRA 336


>gi|116074911|ref|ZP_01472172.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
 gi|116068133|gb|EAU73886.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
          Length = 449

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 141/351 (40%), Gaps = 54/351 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  QE AI  +L   S ++ M        G+GKT    + M   +  G +       A
Sbjct: 37  TPSPIQEQAIPAVL---SGRDLMA---AAQTGTGKTAGFTLPMLETLSHGARPGRGQIRA 90

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHIIIG 381
           +++ P   LA Q  +  + Y+++ ++  E++ G +   PQ      ++R+  G   ++  
Sbjct: 91  LVLTPTRELAAQVLDNARDYSRHLRLRSEVVFGGVKINPQ------IQRLQQGVDLLVAT 144

Query: 382 THALF----QDSIQYYKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTAT--P 430
              L     Q ++++ ++  +++DE  R     F    R  L++       LL +AT  P
Sbjct: 145 PGRLLDLHQQGAVRFERVEFLVLDEADRMLDMGFIHDIRRVLSRLPERRQNLLFSATFSP 204

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             R L    L D              P++  I P N+    ++++       +K   +  
Sbjct: 205 SIRKLATGLLND--------------PLQIQITPPNQTARTVQQVVHPCDMKRKPDLLSH 250

Query: 491 QIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            I          F       N + E  T+     A IHG  S   +   +  FK+G+ ++
Sbjct: 251 LIRSNDWQQVLVFSRTKHGANRVAEKLTNEGLVAAAIHGNKSQGARTRALQGFKDGSVRV 310

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           L+AT +   GID+     ++  +  +     +H++ GR GR  E    I L
Sbjct: 311 LVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRI-GRTGRAGECGHAISL 360


>gi|332251086|ref|XP_003274677.1| PREDICTED: eukaryotic initiation factor 4A-I isoform 1 [Nomascus
           leucogenys]
          Length = 410

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 126/292 (43%), Gaps = 39/292 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+ ++ 
Sbjct: 190 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIRILVK 237

Query: 464 PINRIDEVIERLKV-VLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHE 512
                 E I +  + V + G    W    + +  ++          N R  V+       
Sbjct: 238 KEELTLEGIRQFYINVETRGGAPEWKLDTLCDLYKTLTITQAVIFINTRRKVDWLTEKMH 297

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 298 ARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 349


>gi|300711243|ref|YP_003737057.1| DEAD/H associated domain protein [Halalkalicoccus jeotgali B3]
 gi|299124926|gb|ADJ15265.1| DEAD/H associated domain protein [Halalkalicoccus jeotgali B3]
          Length = 946

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 135/329 (41%), Gaps = 40/329 (12%)

Query: 302 VGSGKTLVALIAMAAAVEA-----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            G+GKT  A++ +  ++       G  A+ + P+  L +   E +  + +   I + +  
Sbjct: 55  TGTGKTETAMLPVFDSITRSETPFGLSALYITPLRALNRDMRERLDWWGERLGIEIAVRH 114

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-------LVIVDEQHRFGVQ 409
           G+     R+K     A+    +++ T    Q  +   KL         V+VDE H     
Sbjct: 115 GDTSDYQRQKQ----ANDPPDVLVTTPETVQAMLTGSKLREALSDIEFVVVDEVHELAAS 170

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI----------SKITEKPAGRKPIK 459
           +R    Q A A   L+  A    R  +  ++GD +            +I E  AG +   
Sbjct: 171 KRG--AQMAIALERLVKLAGDFQRIGLSATVGDPESVGAFLTGNRPCEICEVEAGSRLDL 228

Query: 460 TVIIP-INRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEH 513
            V+ P I   DE +    V   E         ++ E+ ES     N R   E   S    
Sbjct: 229 RVLTPEIEPGDEGLASELVTEPEMASHVRAIREVVEENESTLIFVNTRQTAEALGSRFNV 288

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV--VDASIIIIENAEHF 571
             ++I + HG ++   +  V D+FK G    L+ T+ +E+GIDV  VD    +++ +   
Sbjct: 289 LEANIGVHHGSLAKDARIEVEDAFKAGELDGLLCTSSMELGIDVGQVDH---VVQYSSPR 345

Query: 572 GLAQLHQLRGRVG-RGEEISSCILLYHPP 599
            +++L Q  GR G R +++S   ++   P
Sbjct: 346 EVSRLLQRVGRAGHRSDQVSQGTVIATSP 374


>gi|259486129|tpe|CBF83723.1| TPA: ATP-dependent RNA helicase eIF4A (EC 3.6.1.-)(Eukaryotic
           initiation factor 4A)(eIF-4A)(Translation initiation
           factor 1) [Source:UniProtKB/Swiss-Prot;Acc:Q5B948]
           [Aspergillus nidulans FGSC A4]
          Length = 398

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 132/302 (43%), Gaps = 64/302 (21%)

Query: 297 ILQGDVGSGKT----LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           I Q   G+GKT    + AL  +   V+A  QA+I+AP   LAQQ  + +        I  
Sbjct: 66  IAQAQSGTGKTATFSISALQKLDPNVKAC-QALIVAPTRELAQQIQKVVIAIGDFMNIQC 124

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQH 404
               G       R  +  +  G   I++GT     D IQ   L        IL   DE  
Sbjct: 125 HACIGG---TAVRDDMNALREG-PQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEML 180

Query: 405 RFGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
             G  +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P++ 
Sbjct: 181 SRGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPVRI 226

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE--------------- 505
           ++          ++ ++ L EG K ++I  + EE K      + E               
Sbjct: 227 LV----------KKQELTL-EGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRR 275

Query: 506 RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + + L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S+
Sbjct: 276 KVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSL 335

Query: 563 II 564
           +I
Sbjct: 336 VI 337


>gi|168025828|ref|XP_001765435.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683285|gb|EDQ69696.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 535

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 136/341 (39%), Gaps = 57/341 (16%)

Query: 300 GDVGSGKT----------LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNT 348
            + GSGKT          +  L  M   +EA G  AV+MAP   LAQQ  +   K+    
Sbjct: 158 AETGSGKTAAFVLPMLTYISKLPPMTEEIEAEGPYAVVMAPTRELAQQIEDETVKFAHFL 217

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQ 403
            I V  I G   Q+   +   ++  G   ++I T     D ++    +L     V++DE 
Sbjct: 218 DIRVVSIVGG--QSIEEQGF-KLRQG-CEVVIATPGRLLDCLERRYAVLNQCNYVVLDEA 273

Query: 404 HRFGVQQRLKLTQKATAPHVL-LMTATPIPRTLVLTSLGDIDISKI---------TEKPA 453
            R        +      P V+ ++ A P           ++D  KI         T  PA
Sbjct: 274 DR--------MIDMGFEPQVMGVLDAMPSSNLKPENEDAELDTHKIYRTTYMFSATMPPA 325

Query: 454 G--------RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRS 502
                    R P+   I    +  ++I +  +++ E +K   +C  + +  +     F +
Sbjct: 326 VERLARKYLRNPVVVTIGTAGKATDLITQHVIMVKETEKLDRLCRVLNDMGDKTAIIFVN 385

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +  ++L      +   +  +HG  +   +E  +D F+N     L+AT V   GID+ D
Sbjct: 386 TKKSADTLSRQLDKNGYRVTTLHGGKTQEQREVSLDGFRNKRFNCLVATDVAGRGIDIPD 445

Query: 560 ASIIIIENAEHFGLAQLHQLR-GRVGRGEE--ISSCILLYH 597
            + +I  N +  G  +++  R GR GR  +  I++  L  H
Sbjct: 446 VAHVI--NYDMPGNIEMYTHRIGRTGRAGKTGIATTFLTLH 484


>gi|163790825|ref|ZP_02185250.1| primosomal protein n' [Carnobacterium sp. AT7]
 gi|159873893|gb|EDP67972.1| primosomal protein n' [Carnobacterium sp. AT7]
          Length = 804

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 72/145 (49%), Gaps = 7/145 (4%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           + + F   + QE AI+ IL+ +S++   + +L+G  GSGKT + L  +A  ++    A++
Sbjct: 262 QTVSFQLNEGQEKAIQPILKAVSEERPEVFLLKGVTGSGKTEIYLQTIAQTLQNNKSALM 321

Query: 327 MAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           + P I +  Q    F  ++ +     V ++   +    +     +I  G+A +++G  + 
Sbjct: 322 LVPEIALTPQMVNHFKGRFGEE----VAVLHSGLSVGEKYDEWRKIERGEARVVVGARSS 377

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQ 410
               ++   + ++I+DE+H    +Q
Sbjct: 378 IFAPVK--NIGVIIIDEEHEATYKQ 400


>gi|332800411|ref|YP_004461910.1| ATP-dependent DNA helicase RecQ [Tepidanaerobacter sp. Re1]
 gi|332698146|gb|AEE92603.1| ATP-dependent DNA helicase RecQ [Tepidanaerobacter sp. Re1]
          Length = 729

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 1/98 (1%)

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           R  VE      + +  S+   HG MS   ++   D+F     +++ AT    +GID  D 
Sbjct: 238 RKTVESLVKKLQDYDISVVGYHGGMSSEARQENQDNFMLDKVRIIAATNAFGMGIDKPDI 297

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             +I  N     +   +Q  GR GR  E S CIL+Y P
Sbjct: 298 RFVIHYNMPK-NMEAYYQEAGRAGRDGEKSDCILMYSP 334


>gi|332203914|gb|EGJ17981.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47368]
          Length = 396

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 139/320 (43%), Gaps = 41/320 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGD--VGSGKTLVALIAMAAAVEAGG 322
           L+ + F+ PT+ Q+  I  +L          R L G+   GSGKT   L+ +   ++   
Sbjct: 16  LKELKFTTPTEVQDKLIPIVLAG--------RDLVGESKTGSGKTHTFLLPIFQQLDEAS 67

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              QAVI AP   LA Q Y+  ++ + ++ + V ++   +    + + +E++A  Q HI+
Sbjct: 68  DSVQAVITAPSRELATQIYQVARQISAHSDVEVRVV-NYVGGTDKARQIEKLASNQPHIV 126

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTAT 429
           IGT     D ++   L +      +VDE         L+   K           ++ +AT
Sbjct: 127 IGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSAT 186

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA--YW 487
            IP+ L         + K    P   K IKT  +  + ID  +   K      K A  Y 
Sbjct: 187 -IPQKL------QPFLKKYLSNPVMEK-IKTKTVISDTIDNWLISTK---GHDKNAQIYQ 235

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  +N   + 
Sbjct: 236 LTQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEY 295

Query: 545 LIATTVIEVGIDVVDASIII 564
           ++AT +   GID+   S +I
Sbjct: 296 IVATDLAARGIDIEGVSHVI 315


>gi|326477553|gb|EGE01563.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           equinum CBS 127.97]
          Length = 812

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 130/332 (39%), Gaps = 57/332 (17%)

Query: 302 VGSGKTLVALIAMAAAVEA-------------GGQAVIMAPIGILAQQ-HYEFIKKYTQN 347
            GSGKT   L+ +   + +             G  A+I+AP   LAQQ   E +K     
Sbjct: 415 TGSGKTAAFLLPLLVYISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPL 474

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHG---QAHIIIGTHALFQDSIQYYKLIL-----VI 399
              +V I+ G+        +LE  A+     A III T     D I+   L+L     VI
Sbjct: 475 NFNVVSIVGGH--------SLEEQAYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVI 526

Query: 400 VDEQHR----------------FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSL 440
           +DE  R                  V      T++A     +        R   T++ T+ 
Sbjct: 527 MDEADRMIDLGFEEPVNKILDALPVSNEKPDTEEAENAQAMSQHIGGKDRYRQTMMYTAT 586

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
               + +I  K   R  I T+      +D V +R++ V  E K+   +   +  ++    
Sbjct: 587 MPSAVERIARKYLRRPAIVTIGNIGEAVDTVEQRVEFVAGEDKRKKRLAEILTSREYRPP 646

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N +   +      +H   S   +HG  +   +E+ + S +NG+  +L+AT +   
Sbjct: 647 IIVFVNIKRNCDAVARDIKHMGFSAVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGR 706

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           GIDV D S+++  N      +  H++ GR GR
Sbjct: 707 GIDVPDVSLVVNFNMATNIESYTHRI-GRTGR 737


>gi|281178534|dbj|BAI54864.1| ATP-dependent RNA helicase [Escherichia coli SE15]
          Length = 457

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 128/326 (39%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                  K  I  + R+        + L +       C     KKE   +SV +  N + 
Sbjct: 219 QFYETSSKGKIPLLQRL--------LSLHQPSSCVVFC---NTKKEC--QSVCDALNEVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S    +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 QSALS----LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELVVNFELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|239993440|ref|ZP_04713964.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii ATCC 27126]
          Length = 459

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 129/311 (41%), Gaps = 40/311 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I Q   GSGKTL  +I     VE      QA+I+ P   LA Q  +  +   +N   I V
Sbjct: 45  IGQAQTGSGKTLCFVIPALQHVEVNDFTTQAIILCPTRELADQVAQQCRSAAKNIGNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV-----IVDEQHRF- 406
             + G  P   + ++L+       HII+GT     D ++  ++ L      ++DE  R  
Sbjct: 105 TTLCGGQPMGPQIQSLKH----SPHIIVGTPGRVMDHVEKRRIDLSNVKLRVLDEADRML 160

Query: 407 --GVQQRLKLTQKATAPHV--LLMTAT---PIPRTL--VLTSLGDIDISKITEKPAGRKP 457
             G +  L++    T   V  LL +AT    I R     L +     +     KPA  + 
Sbjct: 161 DMGFEDDLRIIFGQTPKQVQTLLFSATFTEQIERVAKQYLHNPVTCKVESQDSKPAITQ- 219

Query: 458 IKTVIIPINRIDEVIERLKVVLS--EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +   ++P  R     + LK VL+  + K A   C      ++     VVE    + + F 
Sbjct: 220 LGYNVLPHTRT----QALKAVLTHYQPKNAIVFC-----NRKVQVNEVVEEL--IEDGF- 267

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            S A + G +    + SV+  F +   ++L+AT V   G+D+ D + +I           
Sbjct: 268 -SAAGLQGDLEQHQRTSVLMQFASDALQVLVATDVAARGLDIDDVACVINYTVSEEPETH 326

Query: 576 LHQLRGRVGRG 586
           +H++ GR  R 
Sbjct: 327 IHRI-GRTARA 336


>gi|153823991|ref|ZP_01976658.1| primosomal protein N` [Vibrio cholerae B33]
 gi|126518487|gb|EAZ75710.1| primosomal protein N` [Vibrio cholerae B33]
          Length = 688

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    SQ+     +L+G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 153 PRLNQEQAIA-IAAVNSQQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 211

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 212 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 265

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 266 FAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALSG 325

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 326 KYHHLQLTQRAGNALPTRN 344


>gi|330686035|gb|EGG97658.1| ATP-dependent DNA helicase, RecQ family [Staphylococcus epidermidis
           VCU121]
          Length = 459

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 130/320 (40%), Gaps = 50/320 (15%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            GSGK+L     +   +      VI   I ++  Q    + +   N +  V  I   M  
Sbjct: 38  TGSGKSLC--YQLPTYIIEKPTLVISPLISLMDDQ----VMQMKLNGERAVCCIHSGMDN 91

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI------LVIVDEQH---RFGVQQRL 412
             +R+ L  I   +  I +    + Q   Q +KLI      L+++DE H    +G   R 
Sbjct: 92  TEKRQNLSNIRQSK-FIYLSPEFILQP--QNFKLIANIDFGLIVLDEAHCLSEWGYDFRP 148

Query: 413 ------KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 K+T    +  +L +TAT  P         + D+S++           T+   +N
Sbjct: 149 HYALIGKITNSFKSATILALTATAPPHL-------ESDLSEML-----NVNFSTIKTSMN 196

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN-SLHEHFTSS---IAIIH 522
           R++  ++ L    S+ +K  W+ PQ+ E   +      ++   +L +    S     I H
Sbjct: 197 RMNISLKHLNFG-SDEEKIEWLLPQLNETGPTIIYVSSKKLCLTLAQLIYDSGFLTGIYH 255

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL----AQLHQ 578
           G +S  ++++V   F N    +++AT+   +GI+  D   +I     HF L    +   Q
Sbjct: 256 GDLSYQERQTVQHQFLNNDIPIIVATSAFGMGINKKDIRTVI-----HFHLSSSPSNYLQ 310

Query: 579 LRGRVGRGEEISSCILLYHP 598
             GR GR  E S  I L+ P
Sbjct: 311 EIGRAGRDGEASQAISLFQP 330


>gi|325913092|ref|ZP_08175462.1| putative ComF operon protein 1 [Lactobacillus iners UPII 60-B]
 gi|325477513|gb|EGC80655.1| putative ComF operon protein 1 [Lactobacillus iners UPII 60-B]
          Length = 429

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 140/346 (40%), Gaps = 53/346 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q     D+L  +  +N    ++    G+GKT +   A+   ++ G    +  P   +
Sbjct: 91  TDRQAKVSADLLHAL--QNNQDHLVHAVTGAGKTEMLFKAVEYFLQQGKYVALATPRLDV 148

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             + Y  + +   NT+I          + H + A +     +  II  TH L    ++YY
Sbjct: 149 VNELYPRMCQAFANTKI---------GKYHGKMAQD--PDNEPFIICTTHQL----LKYY 193

Query: 394 KLI-LVIVDEQHRFGVQQRLKL---TQKATAP--HVLLMTATPIPRTLVLTSLGDIDISK 447
           +   L+I+DE   F       L    + A  P      +TATP    L     G++  S 
Sbjct: 194 QAFDLIIIDEVDAFPYVNNPMLYYGAKNAIKPTGQTFYLTATPSKDMLTKVKNGEMGYSL 253

Query: 448 ITEKPAG------------RKPIKTVII-PINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + ++  G            RK I    + P      +I+ L  +++ GK      P+I E
Sbjct: 254 LQQRFHGGLLAVPEEYLFWRKYISGEFLHPF-----LIKVLNEIINSGKPLLVFVPRIAE 308

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                    +  + ++ +   S + I     SD +++  ++ F+N    +L+ TT++E G
Sbjct: 309 ---------LGLYQTILQKKYSQLVIASVHSSDKNRQQKVEQFRNREISILLTTTILERG 359

Query: 555 IDVVDASIIIIENAEH-FGLAQLHQLRGRVGRG--EEISSCILLYH 597
           +      +I+I   +  +  A L Q+ GRVGR   +++   I  YH
Sbjct: 360 VTFPGVQVIVIAADDAIYTTAGLVQIAGRVGRAATDQVGRVIFCYH 405


>gi|29375944|ref|NP_815098.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis V583]
 gi|257419189|ref|ZP_05596183.1| helicase [Enterococcus faecalis T11]
 gi|29343406|gb|AAO81168.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis V583]
 gi|257161017|gb|EEU90977.1| helicase [Enterococcus faecalis T11]
          Length = 449

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 145/345 (42%), Gaps = 39/345 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT+ QE  I  I +  S       I Q   GSGKT   L+ +   V+      Q VI AP
Sbjct: 25  PTEVQEKLIPIIKKGKSV------IGQSQTGSGKTHTFLLPLMDKVKPTIDEVQIVITAP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q Y+  ++  + +Q  + + +  +    +++ L ++ H Q H++IGT     D 
Sbjct: 79  SRELANQIYQEAQQLARFSQPEIRV-SNFVGGTDKQRQLNKLKHQQPHVVIGTPGRILDM 137

Query: 389 ----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
               +++ +     +VDE         L +   A    +    A  +P  L +       
Sbjct: 138 MNEQALKVHTAFAFVVDE-----ADMTLDMGFLAEVDQI----AGRLPEKLQMLVFSATI 188

Query: 445 ISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
             K+  +P  +K    P+   I P   I E I+   ++ ++GK +  I  Q+        
Sbjct: 189 PEKL--RPFLKKYLENPVIEHIKPKAVISETIDNW-LISTKGKNSNKIIYQLLTIGHPYL 245

Query: 500 ---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +  +R + + ++       +A IHG ++  +++ VM   +N   + ++AT +   
Sbjct: 246 AIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GID+   S +I     H     +H++ GR GR     + I LY P
Sbjct: 306 GIDIEGVSHVINAEVPHELDFFIHRV-GRTGRNGLNGTAITLYSP 349


>gi|325188273|emb|CCA22813.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 465

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 141/340 (41%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ A+K IL           I Q   G+GKT    +++   +       QA+I+AP
Sbjct: 115 PSAIQQRAVKPILLGHDC------IAQAQSGTGKTATFTVSILQKININLKETQALILAP 168

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ  + I        I V    G       R  +  +  G  HI++GT     D 
Sbjct: 169 TRELAQQIVKVIAAIGDYMSINVHACVGGTAV---RDDIHTLQQG-VHIVVGTPGRVGDM 224

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTS 439
           I    L        +L   DE    G Q ++    +    +  V L +AT +P+      
Sbjct: 225 INQGALRTEAVKMFVLDEADEMLSRGFQDQIYDVFRFLPESVQVALFSAT-MPQ------ 277

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
               ++ ++T+K   R PI+   I + R +  +E +K      ++  W    + +  E+ 
Sbjct: 278 ----EVLEVTQKFM-RDPIR---IMVKRDELTLEGIKQFFVAIEREEWKFDTLCDLYETL 329

Query: 499 ---------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N R  V+      +    +++ +HG M    ++ +M  F++G+ ++LI T 
Sbjct: 330 TITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVLITTD 389

Query: 550 VIEVGIDVVDASIIIIE----NAEHFGLAQLHQLRGRVGR 585
           ++  GIDV   S+++      N E++    +H++ GR GR
Sbjct: 390 LLARGIDVQQVSLVVNYDLPLNRENY----IHRI-GRSGR 424


>gi|323448840|gb|EGB04734.1| hypothetical protein AURANDRAFT_70371 [Aureococcus anophagefferens]
          Length = 383

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 134/309 (43%), Gaps = 51/309 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT V  IAM   +E+     Q + ++P   LA+Q  +          +   
Sbjct: 65  IAQSQSGTGKTAVFCIAMLQVLESATNETQMLTISPTRELAEQTQKVCLALGDYMNVQCH 124

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI--VDEQHR 405
              G        + + R+ +G   I+ GT     D I+   L      +LVI   DE   
Sbjct: 125 ACIGGKSIG---EDIRRLDYG-VQIVSGTPGRVFDMIKRRNLRTRNLKMLVIDEADEMLN 180

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G ++++    +   P   V+L++AT     L +T            +    +P++ ++ 
Sbjct: 181 RGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMT------------RKFMNEPVRVLV- 227

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-------HEHFTS 516
                    +R ++ L EG K +++  + EE K   F ++ + +++L         +   
Sbjct: 228 ---------KRDELTL-EGIKQFFVAVEREEWK---FDTLCDLYDTLTITQAVIFCNTKR 274

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            ++ +HG M   +++++M  F+ G  ++LIAT +   G+DV   S++I  +  +     +
Sbjct: 275 KVSAMHGDMPQRERDAIMAEFRGGASRVLIATDIWGRGLDVQQVSLVICYDLPNNRELYI 334

Query: 577 HQLRGRVGR 585
           H++ GR GR
Sbjct: 335 HRI-GRSGR 342


>gi|307215190|gb|EFN89962.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
          Length = 540

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 138/338 (40%), Gaps = 43/338 (12%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     + +        G  A+++AP   LAQQ  +    +  ++ I   
Sbjct: 128 TGSGKTLSYILPAIVHINSQPKLSRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIRNT 187

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G  P+  + + L+        I+I T     D ++  K  L     +++DE  R   
Sbjct: 188 CLYGGAPKGAQARDLD----SGVEIVIATPGRLLDFLESGKTNLKRCTYLVLDEADRMLD 243

Query: 407 -GVQQRL-KLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
            G + ++ K+ ++       LM +   P+ +       L     I++  + +  A    +
Sbjct: 244 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKNLAEDFLKDYAQINVGSL-QLAANHNIL 302

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----ESNFRSVVERFNSLHEHF 514
           +  II + +  E   +L  +L E      I  + E K     E+  R  V+      +  
Sbjct: 303 Q--IIDVCQDYEKENKLSTLLKE------IMAESENKTIVFIETKRR--VDEITRKMKRD 352

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 IHG  +  +++ V+  F++G   +L+AT V   G+DV D   +I  +       
Sbjct: 353 GWPAVCIHGDKTQQERDWVLQDFRSGKAPILVATDVAARGLDVEDVKFVINFDYPSCSED 412

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +H++ GR GR ++  +    + P  S  +   + VLK
Sbjct: 413 YVHRI-GRTGRRQKTGTAYTFFTPNNSNKANDLIQVLK 449


>gi|270158633|ref|ZP_06187290.1| ATP-independent RNA helicase DbpA [Legionella longbeachae D-4968]
 gi|289166549|ref|YP_003456687.1| ATP-dependent RNA helicase [Legionella longbeachae NSW150]
 gi|269990658|gb|EEZ96912.1| ATP-independent RNA helicase DbpA [Legionella longbeachae D-4968]
 gi|288859722|emb|CBJ13695.1| putative ATP-dependent RNA helicase [Legionella longbeachae NSW150]
          Length = 470

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 140/323 (43%), Gaps = 63/323 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYT---QNTQI 350
           I Q   GSGKT    +++   ++      Q +++ P   LA+Q  + I++      N +I
Sbjct: 52  IAQAQTGSGKTAAFALSLLNNLKISFFAVQGLVLCPTRELAEQVSQAIRRLACLMPNVKI 111

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR 405
           I   ++G +P    +  L+ + HG AH+I+GT       L   S+   +L  +++DE  R
Sbjct: 112 IN--LSGGIPM---KPQLDSLRHG-AHLIVGTPGRILKHLKNGSLDLSQLKALVLDEADR 165

Query: 406 F---GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKIT------------ 449
               G    +K           +++  P  R TL+ ++    +I +I+            
Sbjct: 166 MLDMGFFDDMKS----------IISVCPKQRQTLLFSATYPEEIKQISKQFMNNPQEIRV 215

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERF 507
           E PA    I+     + +  +    LK +L   +    +  C        +  +  VE  
Sbjct: 216 ESPAEEINIEEYFYEVTKQAQKFPLLKSLLLHYRPVSTLIFC--------NTRQQTVEVT 267

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           + L E   S+IA+ +G M  +D++  +  F N +C +L+AT V   G+D+ + S +I   
Sbjct: 268 DLLIEEGFSAIAL-NGDMEQVDRDLAVLRFANHSCSILVATDVAARGLDIKELSTVI--- 323

Query: 568 AEHFGLAQLHQLR----GRVGRG 586
             +F LA  H++     GR GR 
Sbjct: 324 --NFDLAFDHEVHIHRIGRTGRA 344


>gi|218192669|gb|EEC75096.1| hypothetical protein OsI_11255 [Oryza sativa Indica Group]
          Length = 1023

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 127/317 (40%), Gaps = 51/317 (16%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   ++ M   +        E G   V+ AP   LA Q Y   KK+ +   + V 
Sbjct: 277 TGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVA 336

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G + +  + K L+        I+I T     D     +++ ++   +++DE  R   
Sbjct: 337 AVYGGVSKFDQFKELK----AGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFD 392

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKT 460
             F  Q R  + Q       LL +AT +P     L    L D              PI+ 
Sbjct: 393 LGFEPQIRSIVGQIRPDRQTLLFSAT-MPYKVERLAREILTD--------------PIRV 437

Query: 461 VIIPINRIDEVIERL-KVVLSEGKKAYWICPQ----IEEKKESNFRSVVERFNSLHEHFT 515
            +  +   +E I+++  V+LS+ +K  W+  +    I++     F +   R + +     
Sbjct: 438 TVGQVGSANEDIKQVVNVLLSDAEKMPWLLEKLPGMIDDGDVLVFAAKKARVDEIESQLN 497

Query: 516 SS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                IA +HG      +   +  FK+G   +L+AT V   G+D+   SI  + N +   
Sbjct: 498 QRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAARGLDI--KSIKTVVNFDIAK 555

Query: 573 LAQLHQLR-GRVGRGEE 588
              +H  R GR GR  +
Sbjct: 556 EMDMHIHRIGRTGRAGD 572


>gi|90578695|ref|ZP_01234505.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein [Vibrio
           angustum S14]
 gi|90439528|gb|EAS64709.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein [Vibrio
           angustum S14]
          Length = 427

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 118/290 (40%), Gaps = 35/290 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LAQQ Y+ I  Y + T+I V +  G      + KAL    +  A I++ T
Sbjct: 88  RALILTPTRELAQQVYDSITTYAKYTEIKVAVAYGGTSMNVQVKAL----NAGAEILVAT 143

Query: 383 HA-----LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                  +F  S+   ++   ++DE  R      +   Q+       +M   P  R  + 
Sbjct: 144 PGRLLDHVFNGSVSLSEVETFVLDEADRMLDMGFIVDIQR-------IMKRMPAERQTLF 196

Query: 438 TSLGDIDISKITEKPAG---RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            S      SK  +K A      P    + P N   E +E++   + + +KA  +   I  
Sbjct: 197 FS---ATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQMVYPVDKHRKAELLAYLIGS 253

Query: 495 KKESNFRSVV--ERFNSLHEHFTSSIAI-------IHGRMSDIDKESVMDSFKNGTCKLL 545
           +   N+R V+   +     +     + +       I+G  S   ++  +D FK+G  ++L
Sbjct: 254 R---NWRQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQRALDDFKSGKTRVL 310

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +AT V   G+D+     ++  +        +H++ GR GR       I L
Sbjct: 311 VATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRI-GRTGRAGMTGHAITL 359


>gi|60551600|gb|AAH91427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus]
          Length = 380

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +  ++I  + 
Sbjct: 49  AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSP 108

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                + +H+  GR GR      C+  Y P
Sbjct: 109 PQDVESYIHR-SGRTGRAGRTGICVCFYQP 137


>gi|12652909|gb|AAH00210.1| DDX50 protein [Homo sapiens]
          Length = 467

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +++ H   +   +HG ++   +E  +  F+ G+ K+L+AT V   G+D+ +  ++I  + 
Sbjct: 136 AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSP 195

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                + +H+  GR GR      CI  Y P
Sbjct: 196 PQDVESYIHR-SGRTGRAGRTGICICFYQP 224


>gi|56708511|ref|YP_170407.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670982|ref|YP_667539.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457676|ref|ZP_03666149.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371138|ref|ZP_04987140.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875360|ref|ZP_05248070.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56605003|emb|CAG46104.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321315|emb|CAL09487.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569378|gb|EDN35032.1| hypothetical protein FTBG_00898 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841359|gb|EET19795.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159724|gb|ADA79115.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 569

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 47/334 (14%)

Query: 299 QGDVGSGKTLVALIAM-----AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           Q   G+GKT    + +      A+ +   Q +++AP   LA Q  E  + + +N   + V
Sbjct: 50  QAQTGTGKTAAFALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDV 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQH 404
             I G      + +AL++       +++GT     D I+           L+L   DE  
Sbjct: 110 ACIYGGQEYGSQIRALKQ----GVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEML 165

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           R G    +K  L+  +     LL +AT IP           DI+ I E+   R P K  +
Sbjct: 166 RMGFIDDVKFVLSHVSEQCQRLLFSAT-IP----------TDIADIIEEYL-RNPCKIQV 213

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--------RSVVERFNSLHEHF 514
               +    + + K ++ +G +      ++ E +E++          S +E  ++L +  
Sbjct: 214 KAKTKTANTVTQ-KFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTSTIEVADNL-KAL 271

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A I+G M    +E ++D F++    +L+AT V+  GID+   S +I  +  +    
Sbjct: 272 GYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPNDTDT 331

Query: 575 QLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTR 607
            +H++ GR GR G E +S  L+   PL +  + R
Sbjct: 332 YVHRI-GRTGRAGREGTSISLV---PLKEMRFLR 361


>gi|327275873|ref|XP_003222696.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Anolis
           carolinensis]
          Length = 924

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 129/321 (40%), Gaps = 40/321 (12%)

Query: 302 VGSGKTLVALIAM------AAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   +  M         +E G    AVI+ P   L QQ +   K++ +   +   
Sbjct: 299 TGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSV 358

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGV 408
            + G      + KAL+      A I++ T     D ++       ++  ++ DE  R   
Sbjct: 359 AVYGGGSMWEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRM-F 413

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR---KPIKTVIIPI 465
               +   ++ A HV      P  +TL+ ++       K  EK A      PI+ V   I
Sbjct: 414 DMGFEYQVRSVASHVR-----PERQTLLFSAT----FRKKIEKLARDILIDPIRVVQGDI 464

Query: 466 NRIDEVIERLKVVLSEGKKAY-WICPQIEEKKESNF-------RSVVERFNSLHEHFTSS 517
              +E I ++  + + G   + W+  ++ E   S         ++  E   +  +    S
Sbjct: 465 GEANEDITQIVEIFASGPNKWNWLTSRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHS 524

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + ++HG M   ++  V+  FK G   +L+AT V   G+D+     +I  +         H
Sbjct: 525 LGLLHGDMDQSERNKVISDFKKGAFPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTH 584

Query: 578 QLRGRVGR-GEEISSCILLYH 597
           ++ GR GR GE+  +  LL H
Sbjct: 585 RI-GRTGRAGEKGVAYTLLTH 604


>gi|307596489|ref|YP_003902806.1| helicase domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307551690|gb|ADN51755.1| helicase domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 1035

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           R   E +  L E     +A+I  + SD  ++S+  +F  G  K+++ATTV++ GIDV DA
Sbjct: 892 RQAEELYKVLKEELGPIVALITSKTSD--RDSIFKAFARGVYKVIVATTVLDEGIDVPDA 949

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGR 585
            + II +    G     Q+  RVGR
Sbjct: 950 DVAIILS----GTGSQRQMIQRVGR 970


>gi|296161858|ref|ZP_06844659.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295887877|gb|EFG67694.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 467

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 136/309 (44%), Gaps = 32/309 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++      QA+++ P   LA Q  + I++  +  + I V
Sbjct: 50  IAQAKTGSGKTAAFSLALLARLDVRNFAVQAMVLCPTRELADQVTQEIRRLARAEENIKV 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G  P   +  +LE   HG AHI++GT     D ++   L L     +++DE  R  
Sbjct: 110 LTLCGGTPMRPQTASLE---HG-AHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRML 165

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIK 459
              F       + Q       LL +AT  P  +V  S   L +    K+ E+    K I+
Sbjct: 166 DMGFFDDIATVVKQCPKERQTLLFSAT-YPEGIVKLSQQFLRNPKEVKLAERHDNTK-IR 223

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
                +   DE +  + ++L+  +    +     +++  +   V+ R    H     ++A
Sbjct: 224 QRFYEVTE-DERLHAVGLLLNHYRPVSTLAFCNTKQQCRDLLDVL-RAQGFH-----ALA 276

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++
Sbjct: 277 L-HGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI 335

Query: 580 RGRVGRGEE 588
            GR GR ++
Sbjct: 336 -GRTGRADQ 343


>gi|269966225|ref|ZP_06180314.1| putative ATP-dependent DNA helicase RecQ [Vibrio alginolyticus 40B]
 gi|269829140|gb|EEZ83385.1| putative ATP-dependent DNA helicase RecQ [Vibrio alginolyticus 40B]
          Length = 641

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 135/331 (40%), Gaps = 46/331 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            GSGK+L   +    A       ++++P+  L +    F+    Q+  I    I  +  +
Sbjct: 42  TGSGKSLCYQLP---ATILPNLTLVISPLLALMKDQLSFL----QSKGIAAASIDSSQSR 94

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQR-- 411
              ++ +  + +GQ  I++ +     +  F++ I+   + L+++DE H    +G   R  
Sbjct: 95  EEAQQVMAGVKNGQIKILMISVERLKNERFREFIRQVPISLMVIDESHCISEWGHNFRPD 154

Query: 412 -LKLTQ---KATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
            LKL Q   +   P  LL+TAT  P  +  +    DI    IT     R  +   +IP  
Sbjct: 155 YLKLPQYQRELNIPQSLLLTATATPAVIEDMQKKFDISSEHITVTGFYRSNLDISVIPCE 214

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
              +  +  +++ S  K    +    ++  E   +S++        H   +    H  M 
Sbjct: 215 ETKKQEQLSEIIASSPKLPTIVYVTQQQTAERVAKSLI--------HIGINAHAYHAGMK 266

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGR 582
              +E +   F +G    ++AT    +G+D  D   +I     HF L +      Q  GR
Sbjct: 267 SDVREQIQQQFMDGQIDCIVATIAFGMGVDKSDIRRVI-----HFDLPKSIENYAQEIGR 321

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            GR  + S CILL        + + L+VL+N
Sbjct: 322 AGRDGQRSECILL-------GNTSGLTVLEN 345


>gi|256370208|ref|YP_003107719.1| primosome assembly protein PriA [Brucella microti CCM 4915]
 gi|256000371|gb|ACU48770.1| primosome assembly protein PriA [Brucella microti CCM 4915]
          Length = 744

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 7/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           ++ Q++A + + + +      + +L G  GSGKT V   A+A A++AG Q +I+ P   L
Sbjct: 212 SQDQQAAAEMLSEAVEAGGFSVSLLDGVTGSGKTEVYFEAVAKALDAGRQVLILLPEIAL 271

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            QQ   F+ ++             ++    R +   ++A G   ++ G   ALF   + +
Sbjct: 272 TQQ---FLDRFHDRFGAKPAEWHSDLAPRTRERVWRQVAEGTVRVVAGARSALF---LSF 325

Query: 393 YKLILVIVDEQHRFGVQQ 410
            +L L++VDE+H    +Q
Sbjct: 326 KELGLIVVDEEHDPAYKQ 343


>gi|325271804|ref|ZP_08138271.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324103051|gb|EGC00431.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 396

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 129/287 (44%), Gaps = 35/287 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHI 378
           +A+++ P   LA+Q +  +++Y +N  +    + G +   PQ  R R+ ++ +      +
Sbjct: 29  RALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMRLRRGVDLLVATPGRL 88

Query: 379 IIGTHALF-QDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP---HVLLMTATPI 431
           +     LF Q+++++ ++  +++DE  R    G  + L+ +  A  P     LL +AT  
Sbjct: 89  L----DLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQ-SVYAALPRKRQTLLFSATFS 143

Query: 432 PRTLVLTSLGDIDISKITEKP--AGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYW 487
            +  +L  L   D   I   P  A    +K  ++P++  R +++   L       +K  W
Sbjct: 144 EQIRLLAGLALSDPLSIEVSPRNAAAASVKQWLVPVDKKRKEDLFCHLM------RKQRW 197

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
               +  K  +    +V R   L E   +    IHG      ++  +DSFK    ++L+A
Sbjct: 198 KQVLVFAKTRNGVDQLVARL--LAEGVNADG--IHGDRPQATRQRALDSFKAREIQVLVA 253

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
           T V   G+D+ D  +++  +        +H++ GR GR    GE IS
Sbjct: 254 TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRI-GRTGRAGNKGEAIS 299


>gi|323355798|gb|EGA87612.1| Fal1p [Saccharomyces cerevisiae VL3]
          Length = 372

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 147/343 (42%), Gaps = 58/343 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q  AI  I+   S K+    I Q   G+GKT    I +  A++      QA+I++
Sbjct: 18  APSSIQSRAITQII---SGKDV---IAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILS 71

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +K       +    ITG        K +++  HG    + GT     D
Sbjct: 72  PTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQK--HG-CQAVSGTPGRVLD 128

Query: 389 SI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            I     Q   + ++++DE     + + L   Q+    + +        + +V+++  + 
Sbjct: 129 MIKRQMLQTRNVQMLVLDEADEL-LSETLGFKQQI---YDIFAKLPKNCQVVVVSATMNK 184

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           DI ++T K     P+K ++          +R ++ L EG K Y +     +K+E  F ++
Sbjct: 185 DILEVTRKFMN-DPVKILV----------KRDEISL-EGIKQYVVNV---DKEEWKFDTL 229

Query: 504 VERFNSL-------------------HEHFTSSIAII--HGRMSDIDKESVMDSFKNGTC 542
            + ++SL                        S+ A++  HG M   +++ VM+ F+ G  
Sbjct: 230 CDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHS 289

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   GIDV   S++I  +        +H++ GR GR
Sbjct: 290 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRI-GRSGR 331


>gi|300853611|ref|YP_003778595.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300433726|gb|ADK13493.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 496

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 144/345 (41%), Gaps = 40/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P++ QE  I  I      KN+ + I++   GSGKT    I +   +E      Q +++A
Sbjct: 41  NPSQVQEKVIPLIF-----KNKDI-IVKSQTGSGKTAAFAIPICEKIELEEKNPQVLVLA 94

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA---- 384
           P   LA Q  E      +  +I    I G  P   + K L++    + H+I+GT      
Sbjct: 95  PTRELALQIKEDFYDIGRFKRINCTAIFGKEPITTQIKELKQ----RTHVIVGTPGRTLD 150

Query: 385 -LFQDSIQYYKLILVIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
            + +D++   K+  +I+DE         + Q   +  K     V L+ +  IP+ ++   
Sbjct: 151 HIEKDTLSLKKIQYLIIDEADEMLNMGFIDQVKAVLDKLPKNRVTLLFSATIPQEILKLC 210

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEV---IERLKVVLSEGKKAYWICPQ---IE 493
              ++ + I  +     P+      INRI+++   IE  K      K  Y   P+   I 
Sbjct: 211 AAYMN-NPINVEIDAEDPV------INRINQIYYQIEAYKKFDLLNKLVYTQRPESSMIF 263

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            + + N   +V +          S + +HG M   ++  VM  FK G    L+ T V   
Sbjct: 264 CRTKKNVEDLVLQMKGKG----YSCSGLHGGMLQSERIDVMKRFKRGEFIFLVCTDVAAR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GIDV + + II  +      + +H++ GR GR  +  + I    P
Sbjct: 320 GIDVENITHIINYDIPMEKESYVHRI-GRTGRAGKSGTAITFVTP 363


>gi|302801091|ref|XP_002982302.1| hypothetical protein SELMODRAFT_228839 [Selaginella moellendorffii]
 gi|300149894|gb|EFJ16547.1| hypothetical protein SELMODRAFT_228839 [Selaginella moellendorffii]
          Length = 412

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 123/312 (39%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++      Q  V 
Sbjct: 80  IQQAQSGTGKTATFCSGILQQLDGHLNECQALVLAPTRELAQQIEKVMRALGDYLQTKVH 139

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++   L        +L   DE   
Sbjct: 140 ACVGGTDV----RQDQRICQSGVHVVVGTPGRVYDMLRRRALRSEHIRMFVLDEADEMLS 195

Query: 406 FGVQQRL-KLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + Q   A   V L +AT  P  L +T        K   KP        V I
Sbjct: 196 RGFKDQIYDIFQLLPAKVQVGLFSATMPPEALEITR-------KFMSKP--------VRI 240

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 241 LVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFCNTRRKVDWLTDKLRS 300

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 301 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPE 360

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 361 NYLHRI-GRSGR 371


>gi|326790482|ref|YP_004308303.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326541246|gb|ADZ83105.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 470

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 142/326 (43%), Gaps = 44/326 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I++   GSGKTL  ++ +   ++      QA+I+AP   L  Q +E I    +N+ + ++
Sbjct: 44  IIESHTGSGKTLAFVLPLFEKIDLTKREMQAIILAPTHELVMQIHEQITVLAKNSSLNIQ 103

Query: 354 I--ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRF 406
              I G +   H+ K L      +  II+GT     D +   K+       VI+DE    
Sbjct: 104 SCPIIGEVNIDHQIKKLR----DKPQIIVGTAGRILDLMTKKKITASTIQTVILDEADHL 159

Query: 407 GVQQRLKLTQK-----ATAPHVLLMTATPIPRTL--VLTSLGDIDISKITEKPAGRKPIK 459
             Q +    +K          + L +A+  P  +  V T +    I +  E+      IK
Sbjct: 160 LDQNQANTIKKMLYLLPKDRQICLCSASMSPTAIEAVKTFMTHPVIVRTAEQTVLNPRIK 219

Query: 460 TVIIPINRIDEVIERLK--VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
              + ++   E  + L+  +V +  ++A     Q      ++  ++VE+     +H   S
Sbjct: 220 HFCL-VSEQREKFDMLRKLLVATHTQRALIFVSQ-----NTDTTTLVEKL----KHHGHS 269

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA--- 574
           +A I G+++   +++ + +F++G  KLLI++ +   G+DV D + +I     HF      
Sbjct: 270 VATISGKLTKEARKAALTAFRSGKVKLLISSDLSARGLDVPDITHVI-----HFDFPLTA 324

Query: 575 --QLHQLRGRVGRGEEISSCILLYHP 598
              LH+  GR  RG +    I L  P
Sbjct: 325 HEYLHRA-GRSARGFKEGHSICLATP 349


>gi|242096928|ref|XP_002438954.1| hypothetical protein SORBIDRAFT_10g028940 [Sorghum bicolor]
 gi|241917177|gb|EER90321.1| hypothetical protein SORBIDRAFT_10g028940 [Sorghum bicolor]
          Length = 414

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 127/314 (40%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 82  IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 141

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 142 ACVGGTSV----REDQRILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMF--VLDEADEM 195

Query: 404 HRFGVQQRL-KLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++  + Q   A   V + +AT  P  L +T        K   KP        V
Sbjct: 196 LSRGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEITR-------KFMNKP--------V 240

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 241 RILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKM 300

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 301 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 360

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 361 PENYLHRI-GRSGR 373


>gi|229106040|ref|ZP_04236660.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-28]
 gi|228677375|gb|EEL31632.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-28]
          Length = 345

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 119/284 (41%), Gaps = 29/284 (10%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI-SKITEKPAG--RKPIKT 460
             F  Q    + +  T    +L +AT +P  +   S   +D  + I  K AG     I+ 
Sbjct: 161 MGFIDQVEAIIDELPTQRMTMLFSAT-LPEDVEKLSRTYMDSPTHIEIKAAGITTDKIEH 219

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            +      D++     V   E   +  I  + +E  +  FR +  R N   +        
Sbjct: 220 TLFETREEDKLSLLKDVTTIENPDSCIIFCRTQENVDHVFRQL-NRVNYPCDK------- 271

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I
Sbjct: 272 IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVI 315


>gi|315230394|ref|YP_004070830.1| ATP-dependent helicase [Thermococcus barophilus MP]
 gi|315183422|gb|ADT83607.1| ATP-dependent helicase [Thermococcus barophilus MP]
          Length = 925

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 133/313 (42%), Gaps = 45/313 (14%)

Query: 303 GSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           GSGKT  A++ +  A+   G     A+ +API  L +   E ++ +   T I VE+  G+
Sbjct: 40  GSGKTEAAVLPVLDAILKNGLKPISALYIAPIKALNRDLLERLEWWGAKTGIRVEVRHGD 99

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYY--KLILVIVDE-----QHRF 406
                + K          H++I T       L   S++ Y   +  VIVDE      ++ 
Sbjct: 100 TSAYKKAKQ----TKNPPHLLIITPETLGVILTMKSLRAYLKNIKFVIVDEIAELVDNKR 155

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK------ITEKPAGRKPIKT 460
           GVQ  L L +        L       R  +  ++G+ +  K      +  KP+ RK    
Sbjct: 156 GVQLILGLER--------LSEIAEFQRIGLSATIGNEEEIKEWLKADVIVKPSLRKEYSV 207

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH---- 513
            ++   P  R  ++ E+LK+ +    +   +   +E+ K +   +   +F  +  H    
Sbjct: 208 KVLFPSPDERDLKLAEKLKLPVDVATRLRVLWDIVEKHKRALIFTNTRQFAEILAHRLKA 267

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           +   + + HG +S   +       K G  K LI T+ +E+GID+ D  +++    ++   
Sbjct: 268 WGKPVEVHHGSLSKEARIQAERFLKEGKIKALICTSSMELGIDIGDVDVVV----QYMSP 323

Query: 574 AQLHQLRGRVGRG 586
            Q+++L  R+GR 
Sbjct: 324 RQVNRLIQRIGRA 336


>gi|187931511|ref|YP_001891495.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712420|gb|ACD30717.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 569

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 47/334 (14%)

Query: 299 QGDVGSGKTLVALIAM-----AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           Q   G+GKT    + +      A+ +   Q +++AP   LA Q  E  + + +N   + V
Sbjct: 50  QAQTGTGKTAAFALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDV 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQH 404
             I G      + +AL++       +++GT     D I+           L+L   DE  
Sbjct: 110 ACIYGGQEYGSQIRALKQ----GVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEML 165

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           R G    +K  L+  +     LL +AT IP           DI+ I E+   R P K  +
Sbjct: 166 RMGFIDDVKFVLSHVSEQCQRLLFSAT-IP----------TDIADIIEEYL-RNPCKIQV 213

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--------RSVVERFNSLHEHF 514
               +    + + K ++ +G +      ++ E +E++          S +E  ++L +  
Sbjct: 214 KAKTKTANTVTQ-KFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTSTIEVADNL-KAL 271

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A I+G M    +E ++D F++    +L+AT V+  GID+   S +I  +  +    
Sbjct: 272 GYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPNDTDT 331

Query: 575 QLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTR 607
            +H++ GR GR G E +S  L+   PL +  + R
Sbjct: 332 YVHRI-GRTGRAGREGTSISLV---PLKEMRFLR 361


>gi|209543288|ref|YP_002275517.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530965|gb|ACI50902.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 596

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 136/345 (39%), Gaps = 45/345 (13%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIM 327
           + + ++  + D++   R L ++    GSGKT+   +AMA  +  G +         AVI+
Sbjct: 21  EPTPVQKAVLDVAADGRDL-LVSAQTGSGKTVAFGLAMADTLLGGAERFGPAGAPLAVII 79

Query: 328 APIGILAQQ-HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           AP   LA Q   E    Y      IV  I G M      +ALE      AHI++GT    
Sbjct: 80  APTRELAMQVQRELSWLYAPAGARIVSCI-GGMDARREARALEI----GAHIVVGTPGRL 134

Query: 387 QDSIQYYKLIL-----VIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLV 436
            D     +L+L     V++DE       G +  L+  L         LL +AT       
Sbjct: 135 CDHQSRGRLVLSELRVVVLDEADEMLDLGFRDELQQLLDAMPDTRRTLLFSATIAKDIAT 194

Query: 437 LTSLGDIDISKITEKPAGRK----PIKTVII-PINRIDEVIERLKVVLSEGKKAYWICPQ 491
           L      D  +I      R+      + V+  P   I  V+  L+   ++   A   C  
Sbjct: 195 LARRYQRDALRIDTLSGARQHADITYRAVMADPREIIPAVVNILR--FTDSPTAMVFC-- 250

Query: 492 IEEKKESNFRSVVERF-NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                    R +V     +L E   SS+A+  G +   ++   ++S + G  ++ +AT V
Sbjct: 251 -------ATRELVRHMQGALLERGFSSVAL-SGELGQSERTRAIESLRTGQARVCVATDV 302

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
              GID+   S+++  +        LH+  GR GR      C L+
Sbjct: 303 AARGIDIPALSLVVHASLPTDSATLLHR-SGRTGRAGRKGVCALI 346


>gi|157126319|ref|XP_001654592.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882564|gb|EAT46789.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 699

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 138/337 (40%), Gaps = 59/337 (17%)

Query: 294 MLRILQGDVGSGKTLV----ALIAMAAAVE----AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL     AL+ +    +     G  A+++AP   LAQQ  +    + 
Sbjct: 162 MVGIAQ--TGSGKTLAYIAPALVHITHQDQLRRGDGPIALVLAPTRELAQQIQQVATDFG 219

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIV 400
           Q        + G  P+  + + LER     A I+I T     D ++       +   +++
Sbjct: 220 QRINANNTCVFGGAPKGPQIRDLER----GAEIVIATPGRLIDFLERGITNLRRCTYLVL 275

Query: 401 DEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGD---IDISKIT 449
           DE  R     F  Q R  + Q      VL+ +AT  P   R L    L D   I+I  + 
Sbjct: 276 DEADRMLDMGFEPQIRKIMGQIRPDRQVLMWSAT-WPKEVRNLAEEFLNDYIQINIGSLN 334

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVER 506
                       I+ I  + E  E+ + ++        +  +I  + E+    F     R
Sbjct: 335 LS------ANHNILQIVDVCEDYEKDQKLMK-------LLTEISAENETKTIIFVETKRR 381

Query: 507 FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + +  +   +      IHG  S  +++ V+++F+NG   +L+AT V   G+DV D   +
Sbjct: 382 VDDITRNINRNGWRAVSIHGDKSQQERDYVLNAFRNGRQGILVATDVAARGLDVEDVKFV 441

Query: 564 I----IENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           I      N+E +    +H++ GR GR     +   L+
Sbjct: 442 INYDYPSNSEDY----VHRI-GRTGRSNNTGTAYTLF 473


>gi|3097266|emb|CAA76677.1| translation initiation factor [Pisum sativum]
          Length = 407

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 139/328 (42%), Gaps = 32/328 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  Q+ A+  I+Q          I Q   G+GKT +  + +   V+      QA+I++P
Sbjct: 56  PSAIQQRAVAPIIQGRDV------IAQAQSGTGKTSMIALTVCQVVDTSVREVQALIVSP 109

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I     +  I      G        + LE   HG  H++ GT     D 
Sbjct: 110 TRELATQTEKVILAIGDHINIQAHACIGGKSVGEDIRKLE---HG-VHVVSGTPGRVCDM 165

Query: 390 IQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L      L+++DE       G + ++    +   P   V L++ T     L +T+
Sbjct: 166 IKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISRTLPHEILEMTN 225

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
               D  +I  K      + IK   + + + D   + L V+      +  +   +  K++
Sbjct: 226 KFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCVIFMILSPSLKLLYSVNTKRK 285

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            ++ +   R N+       +++ +HG M   +++++M  F+ GT ++LI T V   G+DV
Sbjct: 286 VDWLTEKMRNNNF------TVSSMHGDMPQKERDAIMGEFRAGTTRVLITTDVWARGLDV 339

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGR 585
              S++I  +  +     +H++ GR GR
Sbjct: 340 QQVSLVINYDLPNNRELYIHRI-GRSGR 366


>gi|268563240|ref|XP_002638790.1| Hypothetical protein CBG05145 [Caenorhabditis briggsae]
 gi|187035232|emb|CAP25672.1| hypothetical protein CBG_05145 [Caenorhabditis briggsae AF16]
          Length = 400

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 142/338 (42%), Gaps = 53/338 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AI  IL     K R + I Q   G+GKT    I++  +++      QA+I++P
Sbjct: 50  PSAIQQRAIPAIL-----KARDV-IAQAQSGTGKTATFSISVLQSLDTQVRETQALILSP 103

Query: 330 IGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
              LA Q  + +       N Q    I   N+ +  R+     + +GQ H++ GT     
Sbjct: 104 TRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRK-----LDYGQ-HVVSGTPGRVF 157

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVL 437
           D I+   L        +L   DE    G +++L    +   P   V+L++AT     L +
Sbjct: 158 DMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEM 217

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           TS    D            PI+   I + R +  +E +K       K  W    + +  +
Sbjct: 218 TSKFMTD------------PIR---ILVKRDELTLEGIKQFFVAVDKEEWKFDTLIDLYD 262

Query: 498 S----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +          N R  V+      +    +++ +HG M   D++ VM  F+ G  ++LI+
Sbjct: 263 TLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGNTRVLIS 322

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           T V   G+DV   S++I  +  +     +H++ GR GR
Sbjct: 323 TDVWARGLDVPQVSLVINYDLPNNRELYIHRI-GRSGR 359


>gi|163848628|ref|YP_001636672.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526563|ref|YP_002571034.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163669917|gb|ABY36283.1| DEAD/DEAH box helicase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450442|gb|ACM54708.1| DEAD/DEAH box helicase domain protein [Chloroflexus sp. Y-400-fl]
          Length = 552

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 132/319 (41%), Gaps = 33/319 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           I Q   G+GKT    + M   V      QA+++AP   LA Q  E I +Y ++  + V  
Sbjct: 43  IAQAQTGTGKTAAFALPMIERVTDALVVQALVLAPTRELAVQVAEAIHRYGRHRSLRVLP 102

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF--- 406
           I G  P     + L  +A G   +++GT     D     S+++  L +V++DE       
Sbjct: 103 IYGGQPI---ERQLRGLAQG-TQVVVGTPGRVLDHLKRGSLRFDHLRMVVLDEADEMLDM 158

Query: 407 GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT---SLGDIDISKITEKPAGRKPIKTV 461
           G  + L+  L    T     L +AT  P    LT   +   + +S   E+    +  +T 
Sbjct: 159 GFAEELEAILQLTPTERQTALFSATLPPAVQNLTLRYTRQPVRVSIAAEQLTTPRIRQTY 218

Query: 462 --IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
             ++  +++D +   L   + +   A   C   +E  +     + ER         S   
Sbjct: 219 YEVLARDKLDALCRVLDAEMPQ--LAIVFCRTRQEADD-----IGERLQGRGYAAES--- 268

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG +S   ++ VM  F+ G   +L+AT V   G+D+ + S +I  +      + +H++
Sbjct: 269 -LHGDLSQAARDRVMRRFREGQLDVLVATDVAARGLDIAEVSHVINYDVPTDPESYVHRI 327

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       I    P
Sbjct: 328 -GRTGRAGREGVAITFITP 345


>gi|296105367|ref|YP_003615513.1| primosome assembly protein PriA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059826|gb|ADF64564.1| primosome assembly protein PriA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 731

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 220 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 275

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 276 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 329


>gi|253568074|ref|ZP_04845485.1| ATP-independent RNA helicase [Bacteroides sp. 1_1_6]
 gi|251842147|gb|EES70227.1| ATP-independent RNA helicase [Bacteroides sp. 1_1_6]
          Length = 444

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 147/362 (40%), Gaps = 52/362 (14%)

Query: 260 KIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +I Q  L+N+   S    QE+A++   Q   +K+    IL    GSGKTL  L+ +   +
Sbjct: 6   EIIQSALQNLKIESLNPMQEAALE---QGTGRKDV---ILLSPTGSGKTLAYLLPLLLTL 59

Query: 319 EAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           +      Q +I+ P   LA Q     +  +  T        G  P A  +K+   IA   
Sbjct: 60  KPNDDSVQVLILVPSRELALQIDTVFR--SMGTSWKTCCCYGGHPIAEEKKS---IAGNH 114

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             II+GT     D +            LI+   D+   FG    +   +TQ       +L
Sbjct: 115 PAIILGTPGRITDHLSKGNFDPETIETLIIDEFDKSLEFGFHDEMAGIITQLPGLKKRML 174

Query: 426 MTATP---IPRTLVLTSLGDID-ISKITEKPAGRKPIKTVIIPI-NRIDEVIERLKVVLS 480
           ++AT    IP+   L     +D + + TE+   R  +  V+ P  ++ID +   L  + S
Sbjct: 175 LSATDAEEIPQFTGLNRTVKLDFLPEATEEQENRLKLMKVLSPSKDKIDTLYNLLCSLGS 234

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
                +            N R  V+R + L E         HG M   D+E  +  F+NG
Sbjct: 235 SSSIVF-----------CNHRDAVDRVHKLLEDKKLLAERFHGGMEQPDRERALYKFRNG 283

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQLHQLRGRVGRGEEISSCILL 595
           +C +LI+T +   G+D+ +   II     H+ L     A  H+  GR  R +   +  L+
Sbjct: 284 SCHVLISTDLAARGLDIPEIEHII-----HYHLPVNEEAFTHR-NGRTARWDATGTSYLI 337

Query: 596 YH 597
            H
Sbjct: 338 LH 339


>gi|156105935|gb|ABU49329.1| vasa [Ilyanassa obsoleta]
          Length = 411

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 141/335 (42%), Gaps = 41/335 (12%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+ +   +   G            QA+++AP   LA Q Y+  +K++  T 
Sbjct: 11  TGSGKTAAFLLPVLTEMMKEGLTCSPMSVVKEPQAIVVAPTRELADQIYKEARKFSTGTD 70

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   ++ G +   H+   L ++  G A++++GT     D I+  K+ L     +I+DE  
Sbjct: 71  LRPVVVYGGVAVNHQ---LRQVDLG-ANLVVGTPGRLLDFIERGKIGLGKVKYLILDEAD 126

Query: 405 R---FGVQQRL-KLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
           R    G +  + KL      P       LL +AT  P    L +    D   IT    G 
Sbjct: 127 RMLDMGFEPSIRKLVDGLGMPPKSQRQTLLFSATFKPDIQQLAADFMKDYLFITVGIVGG 186

Query: 456 K--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
               ++   + ++R+ +      ++ + G     +   + +K+ ++F   +  + S   +
Sbjct: 187 ACTDVEQTFLEVDRVQKREYLCDILNTSGTNRVLVF--VGQKRNADF---LASYLSQSGY 241

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
            T++   IHG     ++E  +  FK+G   +LIAT V   G+D+ D + ++  +      
Sbjct: 242 PTTT---IHGDRLQREREEALRDFKSGKSPVLIATNVAARGLDIPDVTHVVNYDLPMDID 298

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
             +H++ GR GR   +      Y      N  + L
Sbjct: 299 EYVHRI-GRTGRCGNLGKATSFYSHDTDANLASNL 332


>gi|159041384|ref|YP_001540636.1| reverse gyrase [Caldivirga maquilingensis IC-167]
 gi|157920219|gb|ABW01646.1| reverse gyrase [Caldivirga maquilingensis IC-167]
          Length = 1284

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN--MP 360
           GSGKT   L+A       GG+ +++ P   LA Q Y+    Y  +  + +++IT N  + 
Sbjct: 119 GSGKTTFGLVASIYVASKGGRVLMVFPTSTLAYQVYKRALTYRDSAAVNIKVITYNGLLS 178

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQY---YKLILVIVDE 402
           +  + + L  I  G  +I+I T+A     ++    Y+  LV VD+
Sbjct: 179 EKDKSEVLNAIKAGDFNILIVTNAFLPKGMEILSKYRFDLVFVDD 223


>gi|24644483|ref|NP_731032.1| Rm62, isoform E [Drosophila melanogaster]
 gi|320542448|ref|NP_001189182.1| Rm62, isoform I [Drosophila melanogaster]
 gi|10727150|gb|AAF51927.2| Rm62, isoform E [Drosophila melanogaster]
 gi|257286223|gb|ACV53058.1| LP18603p [Drosophila melanogaster]
 gi|318068719|gb|ADV37273.1| Rm62, isoform I [Drosophila melanogaster]
          Length = 578

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 145/354 (40%), Gaps = 47/354 (13%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  ++ +   
Sbjct: 186 TGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNT 245

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G  P+  + + L+R       I+I T     D     S    +   +++DE  R   
Sbjct: 246 CVFGGAPKGGQMRDLQR----GCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLD 301

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGD-IDISKITEKPAGRKPIK 459
             F  Q R  ++Q       L+ +AT  P+    L    LG+ I I+  + + +    I+
Sbjct: 302 MGFEPQIRKIVSQIRPDRQTLMWSAT-WPKEVKQLAEDFLGNYIQINIGSLELSANHNIR 360

Query: 460 TVIIPINRIDEVIERLKVVLSE----GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            V+   +   +  E+LK +LS+     +    I   +E K+       V+        F 
Sbjct: 361 QVVDVCDEFSKE-EKLKTLLSDIYDTSESPGKIIIFVETKRR------VDNLVRFIRSFG 413

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHF 571
                IHG  S  +++ V+  F++G   +L+AT V   G+DV     +I     +N+E +
Sbjct: 414 VRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDY 473

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
               +H++ GR GR     +    +    +K +   + VL+        A E+L
Sbjct: 474 ----IHRI-GRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENL 522


>gi|116753548|ref|YP_842666.1| Hef nuclease [Methanosaeta thermophila PT]
 gi|116664999|gb|ABK14026.1| DEAD/DEAH box helicase domain protein [Methanosaeta thermophila PT]
          Length = 749

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 15/138 (10%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G GKT+VAL+ M A +E  G+ + +AP   L +QH  F+++   +  ++   +TG    
Sbjct: 38  TGLGKTIVALMVMLARLEK-GRVLFLAPTRPLVEQHAAFLRRVLTSPDLVAS-VTGETDP 95

Query: 362 AHRRKALE--RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG-------VQQRL 412
             R +     RIA     ++   + L    +    + LVI DE HR         + +R 
Sbjct: 96  ESRAEIWRSCRIAVSTPQVV--ENDLLSGRMDLRDVSLVIFDEAHRAAGNYAYVYIAERY 153

Query: 413 KLTQKATAPHVLLMTATP 430
           +  ++A  P VL MTA+P
Sbjct: 154 R--REARDPLVLGMTASP 169


>gi|332523902|ref|ZP_08400154.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332315166|gb|EGJ28151.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 447

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 146/353 (41%), Gaps = 34/353 (9%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           QK L  I F  PT+ Q+  I      +    R L + +   GSGKT   L+ +   ++  
Sbjct: 13  QKALEEINFKEPTEVQKKLIP-----IVNSGRDL-VGESKTGSGKTHTFLLPIFEKLDEN 66

Query: 322 G---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               Q +I AP   LA Q +E  K+   ++Q  + ++   +    + + +E++   Q HI
Sbjct: 67  SRDVQVLITAPSRELATQIFEAAKQIANHSQKEIRLVN-YVGGTDKLRQIEKLKGSQPHI 125

Query: 379 IIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTA 428
           ++GT     D ++      +K    +VDE         L    K  +       +L+ +A
Sbjct: 126 VVGTPGRIYDLVKSGDLAIHKASTFVVDEADMTMDMGFLDTVDKIASSLSKEVQILVFSA 185

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T IP+ L         + K    P   + IKT  +  + ID  +   K     G     I
Sbjct: 186 T-IPQKLQPF------LKKYLRNPLIEQ-IKTETVIADNIDNWLVSTKGRDKNGH-ILEI 236

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              I+      F +  ER + LH    ++   +A IHG +   +++ +M+  K    + +
Sbjct: 237 LKNIQPYLAMIFVNTKERADDLHSFLVANGLKVAKIHGGVPPRERKRIMNQVKKLDFEYI 296

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 297 VATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLSGTAITLYQP 348


>gi|229019510|ref|ZP_04176327.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1273]
 gi|229025752|ref|ZP_04182153.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1272]
 gi|228735552|gb|EEL86146.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1272]
 gi|228741766|gb|EEL91949.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1273]
          Length = 436

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 140/325 (43%), Gaps = 40/325 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYT----QNTQ 349
           I Q   GSGKT   L+     ++A     Q VI AP   LAQQ YE I K T    ++  
Sbjct: 45  IGQSQTGSGKTHAYLLPTLNRIDASREEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQM 104

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQH 404
           I    + G      +++++E++   Q HI++GT    +D ++      YK   +IVDE  
Sbjct: 105 ITARCLIGG---TDKQRSIEKLKK-QPHIVVGTPGRIKDLVEEKALFVYKANTIIVDEAD 160

Query: 405 ---RFG-VQQRLKLTQKATAPHVLLMTATPIPRTL---VLTSLGDIDISKITEKPAGRKP 457
                G +Q   K+  +      +L+ +  IP+ L   +   + + +   I  K      
Sbjct: 161 LMLDMGFIQDVDKIAGRMPKNLQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGN 220

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           I+  ++P +R    IE +K +L + K    I     +KK        E  + L E     
Sbjct: 221 IEHYLVP-SRHRNKIELVKNMLLQFKPYLAIVFTNTKKKAD------EVADGLAER-GLK 272

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHFGL 573
           +  IHG +S  D++ +M   ++   + ++AT +   GID+   S +I      + + F  
Sbjct: 273 VGRIHGDLSPRDRKKMMKQVRDLEFQYIVATDLAARGIDIEGISHVINYELPSDLDFF-- 330

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
             +H++ GR  R       + +Y P
Sbjct: 331 --VHRV-GRTARAGHSGIAVTIYDP 352


>gi|227818223|ref|YP_002818232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|227005726|gb|ACP15469.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
          Length = 481

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 135/319 (42%), Gaps = 32/319 (10%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   Q +++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQVLVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI-SKITEKPAG--RKPIKT 460
             F  Q    + +  T    +L +AT +P  +   S   ++  + I  K AG     I+ 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH 219

Query: 461 VIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            +  + R +E +  LK V + E   +  I  + +E  +  +R + +R N   +       
Sbjct: 220 TLFEV-REEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-DRVNYPCDK------ 271

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      + +H+ 
Sbjct: 272 -IHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRT 330

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       I    P
Sbjct: 331 -GRTGRAGNSGKAITFITP 348


>gi|238606744|ref|XP_002396798.1| hypothetical protein MPER_02894 [Moniliophthora perniciosa FA553]
 gi|215470018|gb|EEB97728.1| hypothetical protein MPER_02894 [Moniliophthora perniciosa FA553]
          Length = 288

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 120/276 (43%), Gaps = 63/276 (22%)

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G QA I AP G LAQQ  +          I      G     + R+ + ++  G  H+++
Sbjct: 1   GTQAFIFAPTGELAQQIQKVFVALGDYMNIECHACVGG---TNVREDMAKLQEG-VHVVV 56

Query: 381 GT----------HALFQDSIQYYKLILVIVDEQHRFGVQQRL----KLTQKATAPHVLLM 426
           GT           AL  DSI+ +   L   DE    G + ++    +L  + T   V+L+
Sbjct: 57  GTPGRVYDMINRRALKSDSIKIF--CLDEADEMLSRGFKDQIYEVFQLLPQDT--QVVLL 112

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +AT +P           D+ ++T+K   R P++ ++          +R ++ L EG K +
Sbjct: 113 SAT-MP----------ADVLEVTKKFM-RDPVRILV----------KRDELTL-EGIKQF 149

Query: 487 WICPQIEEKKESNFRSVVE---------------RFNSLHEHFTS---SIAIIHGRMSDI 528
           +I  + EE K      + E               + + L E   S   +++ +HG M   
Sbjct: 150 YIAVEKEEWKLDTLCDLYETVTITQAVIFCNTRRKVDWLTEKMHSREFTVSAMHGDMEQK 209

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 210 QREVLMKEFRSGSSRVLITTDLLARGIDVQQVSLVI 245


>gi|195125432|ref|XP_002007182.1| GI12524 [Drosophila mojavensis]
 gi|193918791|gb|EDW17658.1| GI12524 [Drosophila mojavensis]
          Length = 602

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 138/340 (40%), Gaps = 45/340 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ----------AVIMAPIGILAQQHYEFIKKYTQNTQII 351
            GSGKTL  +  + A V   GQ          A+++AP   LAQQ       +  ++ + 
Sbjct: 155 TGSGKTLAFI--LPAIVHINGQPTLKRGDGPIALVVAPTRELAQQIQTVANDFGSSSYVR 212

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHR- 405
              I G  P++ +   L+        I+I T     D +Q       +   +++DE  R 
Sbjct: 213 NTCIFGGAPRSKQASDLQN----GVEIVIATPGRLLDFLQSGTTNLRRCTYLVLDEADRM 268

Query: 406 ----FGVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGD-IDISKITEKPAGRKP 457
               F  Q R  L+Q      +L+ +AT  P   R L    LG+ I I+  + + +    
Sbjct: 269 LDMGFEPQIRKILSQIRPDRQILMWSAT-WPKEVRQLAEDFLGNYIQINIGSLELSANHN 327

Query: 458 IKTVIIPINRIDEVIERLKVVLS-----EGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           I+  +  +    E   +LK +LS      G     I     +KK       V+       
Sbjct: 328 IRQYV-DVCAEHEKGSKLKDLLSHIYDQSGMPGKIIIFVATKKK-------VDELARFIN 379

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
            F   +  IHG  S +D+++V++ F++G   +L+AT V   G+DV     +I  +     
Sbjct: 380 AFGVGVGSIHGDKSQMDRDNVLNDFRSGRANILVATDVAARGLDVDGIKYVINFDFPQSS 439

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              +H++ GR GR     +    +    +K +   + +L+
Sbjct: 440 EDYIHRI-GRTGRKHSTGTSYAFFTRKNAKCARALIEILR 478


>gi|168260141|ref|ZP_02682114.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205350697|gb|EDZ37328.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 457

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 137/326 (42%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI------ 399
              + G  P   +R +L+       HII+ T     D +Q   +      ILV+      
Sbjct: 105 T--LCGGQPFGAQRDSLQH----APHIIVATPGRLLDHLQKETVSLDALHILVMDEADRM 158

Query: 400 --------VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                   +DE  RF    R  L   AT P  +   +  + +  +      I+I  +   
Sbjct: 159 LDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPI-----RIEIDTVDAL 213

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           PA  +             E I  L+ +LS+ + A  +   +    + + ++V +  N++ 
Sbjct: 214 PAIEQQFFE-----TSAHEKISLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALNAVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 Q---SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELVVNYELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFC 345


>gi|196036086|ref|ZP_03103486.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|195991253|gb|EDX55221.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
          Length = 481

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 135/319 (42%), Gaps = 32/319 (10%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P   ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AIYGKSPFVRQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI-SKITEKPAG--RKPIKT 460
             F  Q    + +  T    +L +AT +P  +   S   ++  + I  K AG     I+ 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH 219

Query: 461 VIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            +  + R +E +  LK V + E   +  I  + +E  +  +R + +R N   +       
Sbjct: 220 TLFEV-REEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-DRVNYPCDK------ 271

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      + +H+ 
Sbjct: 272 -IHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRT 330

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR       I    P
Sbjct: 331 -GRTGRAGNSGKAITFITP 348


>gi|16764999|ref|NP_460614.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992838|ref|ZP_02573934.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197262502|ref|ZP_03162576.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|16420182|gb|AAL20573.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197240757|gb|EDY23377.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205329063|gb|EDZ15827.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246847|emb|CBG24663.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993587|gb|ACY88472.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158183|emb|CBW17681.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912646|dbj|BAJ36620.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224281|gb|EFX49344.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129924|gb|ADX17354.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988542|gb|AEF07525.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 457

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 137/326 (42%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI------ 399
              + G  P   +R +L+       HII+ T     D +Q   +      ILV+      
Sbjct: 105 T--LCGGQPFGAQRDSLQH----APHIIVATPGRLLDHLQKETVSLDALHILVMDEADRM 158

Query: 400 --------VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                   +DE  RF    R  L   AT P  +   +  + +  +      I+I  +   
Sbjct: 159 LDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPI-----RIEIDTVDAL 213

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           PA  +             E I  L+ +LS+ + A  +   +    + + ++V +  N++ 
Sbjct: 214 PAIEQQFFE-----TSAHEKISLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALNAVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 Q---SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELVVNYELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFC 345


>gi|313890658|ref|ZP_07824285.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120969|gb|EFR44081.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 447

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 148/360 (41%), Gaps = 48/360 (13%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           QK L  I F  PT+ Q+  I      +    R L + +   GSGKT   L+ +   ++  
Sbjct: 13  QKALEEINFREPTEVQKKLIP-----VVNSGRDL-VGESKTGSGKTHTFLLPIFEKLDED 66

Query: 322 G---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               Q +I AP   LA Q +E  K+   ++Q  + ++   +    + + +E++   Q HI
Sbjct: 67  SRDVQVLITAPSRELATQIFEAAKQIASHSQKEIRLVN-YVGGTDKLRQIEKLKGSQPHI 125

Query: 379 IIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAP-----HVLLMTA 428
           ++GT     D ++      +K    +VDE         L    K  A       +L+ +A
Sbjct: 126 VVGTPGRIYDLVKSGDLAIHKASTFVVDEADMTMDMGFLDTVDKIAASLAKNVQILVFSA 185

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-----ERLKVVLSEGK 483
           T IP+ L               +P  +K ++  +I   R + VI       L       K
Sbjct: 186 T-IPQKL---------------QPFLKKYLRNPLIEQIRTETVIADNIDNWLVSTKGRDK 229

Query: 484 KAY--WICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
            A+   I   I+      F +  ER + LH    ++   +A IHG +   +++ +M+  K
Sbjct: 230 NAHILEILTNIQPYLAMIFVNTKERADELHSFLVANGLKVAKIHGGVPPRERKRIMNQVK 289

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               + ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 290 KLEFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFIHRV-GRTGRNGLSGTAITLYQP 348


>gi|289668633|ref|ZP_06489708.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 35

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/26 (84%), Positives = 24/26 (92%)

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGR 585
           AS++IIENAE  GLAQLHQLRGRVGR
Sbjct: 1   ASLMIIENAERLGLAQLHQLRGRVGR 26


>gi|228940956|ref|ZP_04103515.1| Primosomal protein N' [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228973885|ref|ZP_04134461.1| Primosomal protein N' [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228980475|ref|ZP_04140785.1| Primosomal protein N' [Bacillus thuringiensis Bt407]
 gi|228779295|gb|EEM27552.1| Primosomal protein N' [Bacillus thuringiensis Bt407]
 gi|228785910|gb|EEM33913.1| Primosomal protein N' [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228818792|gb|EEM64858.1| Primosomal protein N' [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 767

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q   I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 228 PFPLTEEQNQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|114797126|ref|YP_760597.1| primosome assembly protein PriA [Hyphomonas neptunium ATCC 15444]
 gi|114737300|gb|ABI75425.1| primosomal protein N' [Hyphomonas neptunium ATCC 15444]
          Length = 732

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 93/424 (21%), Positives = 158/424 (37%), Gaps = 106/424 (25%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L G  GSGKT V   A+A  +++  +A I+  +  +A       +   +         +
Sbjct: 222 LLDGVTGSGKTEVYFEAIAETLKSDPEAQILVLLPEIALTQAILARFEARFGAAPAPWHS 281

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           G  P+  RR   E + HG+A I+IG   ALF   + Y KL L+IVDE+H    +Q   +T
Sbjct: 282 GLSPKDRRRTWREAV-HGRARIVIGARSALF---LPYRKLRLIIVDEEHDTSFKQEDGVT 337

Query: 416 ----------QKATAPHVLLMTATPIPRTLVLTSLG-----------------DIDISKI 448
                      K     V+L +ATP   T V    G                 DI++  +
Sbjct: 338 YHARDLAVMRAKLEGGQVILASATPALETAVNAEAGRYVHLRLAARPGASRLPDIELVDL 397

Query: 449 TEKPAGRKPIKTVII------------------------PINRIDEVIERLKVVLSE--- 481
              P G+    + ++                        P+       ERLK   +E   
Sbjct: 398 RTAPPGKGKWLSPVLERALMETLANGEQSLLFLNRRGYAPLVICKACGERLKTPGTENWL 457

Query: 482 ------GK-----KAYWI-----CPQIEEKKE-----SNFRSVVERFNSLHEH-----FT 515
                 G+       Y I     CPQ                V E   +L  H     F+
Sbjct: 458 TEHRYSGRLVCHVTGYSIPKPTKCPQCGAPDSLMGVGPGVERVAEEVRTLLPHARIEIFS 517

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           S  A    + +D+ + S+++  +     ++I T ++  G +  + +++ + +A+  GL  
Sbjct: 518 SDTA----QGADVTR-SLVERMERSEIDVMIGTQIVAKGHNFPNLTLVGVVDADS-GLKG 571

Query: 576 ------------LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
                       L Q+ GR GR E     ++  + P   ++    ++  N  DGFL  E 
Sbjct: 572 GDLRAGERTYQLLSQVAGRAGRAERPGRALVQTYAP---DNPAMEALAANDRDGFLQIER 628

Query: 624 DLKQ 627
           D++ 
Sbjct: 629 DVRS 632


>gi|159901065|ref|YP_001547312.1| ATP-dependent DNA helicase RecQ [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894104|gb|ABX07184.1| ATP-dependent DNA helicase, RecQ family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 864

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 93/226 (41%), Gaps = 31/226 (13%)

Query: 386 FQDSIQYYKLILVIVDEQHR---FGVQQR------LKLTQKATAPHVLLMTATPIPRT-- 434
           F  ++Q   + L +VDE H    +G   R       +  ++   P VL +TAT  P T  
Sbjct: 146 FLYALQQVGISLFVVDEAHCVSLWGFSFRPDYLFIREALRELGNPLVLGLTATASPATEK 205

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA--YWICPQI 492
            +   LGD++               TV   + R +   E +K    E K+A    +C QI
Sbjct: 206 AICEQLGDLE---------------TVRTNVFRPNLHFELIKASNKEKKQAAILSLCSQI 250

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI-DKESVMDSFKNGTCKLLIATTVI 551
           +       RS       L E    +  +     +   D++++ D F  G  ++++AT   
Sbjct: 251 DGAIIVYARSR-NSCEELAEQLRKTGVVAEAYHAGCPDRDAIQDRFMRGETRVIVATIAF 309

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G+D  D   +I  N     L    Q  GR GR  +IS CI+LY+
Sbjct: 310 GMGVDKRDVRAVIHANLPK-SLEDYAQEAGRAGRDGQISRCIMLYN 354


>gi|108563430|ref|YP_627746.1| primosome assembly protein PriA [Helicobacter pylori HPAG1]
 gi|107837203|gb|ABF85072.1| primosomal protein replication factor [Helicobacter pylori HPAG1]
          Length = 619

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + A+A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHPA-SLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      + + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKRVFKEN----LGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L++VDE+H F 
Sbjct: 219 LKELGLIVVDEEHDFS 234


>gi|332293602|ref|YP_004432211.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171688|gb|AEE20943.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 452

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L E F   + +IH   +   + + +++F  G  ++++AT V+  G+D+ D + +I  N  
Sbjct: 262 LEEAFPGDVDLIHSNKTQNYRINSINAFAKGKVRMMVATDVMARGLDIDDITHVININTP 321

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            F    LH++ GR GR ++    I+L  P
Sbjct: 322 RFPENYLHRI-GRTGRAQKEGVSIVLSTP 349


>gi|320580546|gb|EFW94768.1| ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 529

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 67/339 (19%), Positives = 133/339 (39%), Gaps = 45/339 (13%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL   +     + A        G   +++AP   LA Q  +   K+ ++++I   
Sbjct: 142 TGSGKTLSYCLPAIVHINAQPLLQPGDGPICLVLAPTRELAVQIQKECSKFGRSSRIRNT 201

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G +P+  + + L R     A I I T     D +   +  L     +++DE  R   
Sbjct: 202 CVYGGVPKGQQIRDLAR----GAEICIATPGRLLDMLDSGRTNLKRVTYLVLDEADRMLD 257

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A       +  ++G +D++       
Sbjct: 258 MGFEPQIRKIVDQIRPDRQTLMWSATWPKSVQTLARDYLNDYIQVNIGSLDLAASHNI-- 315

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             K I  V     + D++ + L+  + +        PQ +    ++ +   +   +    
Sbjct: 316 --KQIIDVCSEYEKRDKLAKHLETAMQD--------PQAKVIVFASTKRTCDEITAYMRS 365

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  IHG     +++ V+  F++G   +++AT V   GIDV   + +I  +      
Sbjct: 366 EGWPALAIHGDKEQRERDWVLSEFRSGRSPIMVATDVAARGIDVKGVTTVINHDMPGNVE 425

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             +H++ GR GR  E  + I ++    S  ++  +++L+
Sbjct: 426 DYVHRI-GRTGRAGEKGTAITMFTDGNSGQAHDLITILR 463


>gi|319939673|ref|ZP_08014032.1| primosome assembly protein PriA [Streptococcus anginosus 1_2_62CV]
 gi|319811262|gb|EFW07568.1| primosome assembly protein PriA [Streptococcus anginosus 1_2_62CV]
          Length = 793

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 8/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
            + QE+A++ I Q +    +   +L+G  GSGKT V L  +  A+  G  A+++ P I +
Sbjct: 258 NEEQEAAVQAITQQIGHDGKPF-LLEGVTGSGKTEVYLQVIQEALSRGKTAIMLVPEISL 316

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
             Q    FI ++ +     V I+   +    R     ++  G+A +++G  +     ++ 
Sbjct: 317 TPQVTNRFISRFGKK----VAILHSGLSNGERYDEWRKVERGEAQVVVGARSAIFAPLK- 371

Query: 393 YKLILVIVDEQHRFGVQQ 410
             +  +I+DE+H    +Q
Sbjct: 372 -NIGAIIIDEEHEASYKQ 388


>gi|317575704|ref|NP_001187588.1| eukaryotic initiation factor 4a-i [Ictalurus punctatus]
 gi|308323440|gb|ADO28856.1| eukaryotic initiation factor 4a-i [Ictalurus punctatus]
          Length = 406

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 129/291 (44%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++    G QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIDIELKGTQAMVLAPTRELAQQIQKVVLALGDYMGATCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKLI-LVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S +Y K+  L   DE   
Sbjct: 133 ACIGG---TNVRNEVQKLQADVPHIVVGTPGRVFDMLNRRYLSPKYIKMFALDEADEMLS 189

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK +T   V+L++AT +P+          ++ ++T K   R P++   I
Sbjct: 190 RGFKDQIYEIFQKLSTDIQVILLSAT-MPQ----------EVLEVTTKFM-RDPVR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSALHGDMDQKERDLIMKEFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|325982541|ref|YP_004294943.1| primosomal protein N' [Nitrosomonas sp. AL212]
 gi|325532060|gb|ADZ26781.1| primosomal protein N' [Nitrosomonas sp. AL212]
          Length = 737

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 101/228 (44%), Gaps = 19/228 (8%)

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN--VEGKIAQKILRNIPFSPTKSQE 278
           T PAR R+A   L   Q A LL  +Q K+     IN  +E K    ++       + S+ 
Sbjct: 142 TIPARNRVARRLLTEFQNATLLTTQQIKQISPRAINLLIEWKRLGWVVEKPTIETSSSKA 201

Query: 279 SAIKDILQDMSQKNRMLR---------ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           + I  +  D ++   ++          +L G  GSGKT + L  + +A+  G QA+++ P
Sbjct: 202 TLIPTLTADQAKAVTIVTAGLERFNTWLLHGITGSGKTEIYLRLIESALSHGKQALVLIP 261

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++  +T  ++ + +G +    R     +   G+A II+GT  A+F 
Sbjct: 262 EINLTPQLEAVFRARF--HTVSLINLHSG-LNDTQRLTGWLQAQRGEAKIILGTRLAIFT 318

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
                  L L+IVDE+H    +Q+  L   A    +     T IP  L
Sbjct: 319 P---LSNLGLIIVDEEHDSSFKQQDGLRYSARDLAIFRARETNIPVVL 363


>gi|228477219|ref|ZP_04061857.1| primosomal protein N' [Streptococcus salivarius SK126]
 gi|228251238|gb|EEK10409.1| primosomal protein N' [Streptococcus salivarius SK126]
          Length = 798

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 82/420 (19%), Positives = 165/420 (39%), Gaps = 113/420 (26%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q  A++++ + + Q  +   +L+G  GSGKT V L  +   +  G  A+++ P I +  Q
Sbjct: 266 QAHAVEEMTRQIGQGGKPF-LLEGVTGSGKTEVYLHLIERTLAMGKTAIVLVPEISLTPQ 324

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ--DSIQY 392
               FI ++      +V I+   +    +     ++  GQA +++G   A+F   D+I  
Sbjct: 325 MTNRFISRFGD----LVAIMHSGLSDGEKFDEWRKVRSGQAKVVVGARSAIFAPLDNIG- 379

Query: 393 YKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                +I+DE+H          R+  +    L  K+    ++L +ATP   T      G 
Sbjct: 380 ----AIIIDEEHEATYKQESNPRYHARDVALLRAKSHGAVLVLGSATPSIETRARAQKGV 435

Query: 443 IDISKITEKP-----------------AGRKPIKTVIIPINRIDEVIERL----KVVLSE 481
               ++T++                   GR+       P+  ++++ ERL    +VVL  
Sbjct: 436 YHFLELTQRANPNAKIPQVEVVDFKDFVGRQEASDFTPPL--LEKIRERLGRKEQVVLML 493

Query: 482 GKKAY-------------------------------------------WICPQIEEKKES 498
            ++ Y                                            +CP  + ++  
Sbjct: 494 NRRGYSSFVMCRDCGYVDDCPNCDISLTLHMDTKTMNCHYCDFQKAIPHVCPNCQSRQIR 553

Query: 499 NFRSVVER-FNSLHEHFTSSIAIIHGRMSDIDK-------ESVMDSFKNGTCKLLIATTV 550
            + +  ++ ++ L E    +  I   RM D+D        E ++++F +G   +L+ T +
Sbjct: 554 YYGTGTQKAYDQLTELLPEAKVI---RM-DVDTTRKKGAHEKLLEAFGSGKADILLGTQM 609

Query: 551 IEVGIDVVDASIIIIENAE------HFGLAQ-----LHQLRGRVGRGEEISSCILLYHPP 599
           I  G+D  + +++ + NA+       F  A+     L Q+ GR GR ++    I+  + P
Sbjct: 610 IAKGLDFPNVTLVGVLNADTSLNLPDFRSAERTFQLLTQVAGRAGRADKEGEVIIQTYNP 669


>gi|254487565|ref|ZP_05100770.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
 gi|214044434|gb|EEB85072.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
          Length = 533

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 152/379 (40%), Gaps = 52/379 (13%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------L 308
           +N+  K+ + I      +PT  Q  AI   L+       +L I Q   G+GKT      +
Sbjct: 7   LNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGKD----VLGIAQ--TGTGKTASFTLPM 60

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           + ++A   A     +++++ P   LA Q  E    YT++  +   ++ G +    + K +
Sbjct: 61  ITMLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLNLTKALLIGGVSFGEQDKLI 120

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQ 416
           ++       ++I T     D  +  KLIL     ++VDE  R         +++  ++T 
Sbjct: 121 DK----GVDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTP 176

Query: 417 KATAPHVLLMTATPIPRTLVLTSL---GDIDISKITEKPAGRKPIKTVII-PINRID-EV 471
                  L  +AT  P    +T+      + I    +   G    + V++   +R D E 
Sbjct: 177 FTR--QTLFFSATMAPEIERITNTFLSNPVRIEVARQATTGENIEQGVLMFKASRKDREA 234

Query: 472 IERLKV----VLSEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
            E+ KV    + +EG K   A   C         N +  V+      + +    A IHG 
Sbjct: 235 TEKRKVLRALIDAEGDKCTNAIIFC---------NRKMDVDTVAKSLKKYGYDAAPIHGD 285

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +    +   ++ F+NG  + L+A+ V   G+DV   S +   +        +H++ GR G
Sbjct: 286 LDQSQRTKTLEGFRNGDLRFLVASDVAARGLDVPSVSHVYNFDVPSHAEDYVHRI-GRTG 344

Query: 585 RGEEISSCILLYHPPLSKN 603
           R       I++  P   KN
Sbjct: 345 RAGRDGKAIMICVPRDEKN 363


>gi|194898941|ref|XP_001979021.1| GG10666 [Drosophila erecta]
 gi|190650724|gb|EDV47979.1| GG10666 [Drosophila erecta]
          Length = 720

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 145/354 (40%), Gaps = 47/354 (13%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  ++ +   
Sbjct: 327 TGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNT 386

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G  P+  + + L+R       I+I T     D     S    +   +++DE  R   
Sbjct: 387 CVFGGAPKGGQMRDLQR----GCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLD 442

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGD-IDISKITEKPAGRKPIK 459
             F  Q R  ++Q       L+ +AT  P+    L    LG+ I I+  + + +    I+
Sbjct: 443 MGFEPQIRKIVSQIRPDRQTLMWSAT-WPKEVKQLAEDFLGNYIQINIGSLELSANHNIR 501

Query: 460 TVIIPINRIDEVIERLKVVLSE----GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            V+   +   +  E+LK +LS+     +    I   +E K+       V+        F 
Sbjct: 502 QVVDVCDEFSKE-EKLKTLLSDIYDTSESPGKIIIFVETKRR------VDNLVRFIRSFG 554

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHF 571
                IHG  S  +++ V+  F++G   +L+AT V   G+DV     +I     +N+E +
Sbjct: 555 VRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDY 614

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
               +H++ GR GR     +    +    +K +   + VL+        A E+L
Sbjct: 615 ----IHRI-GRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENL 663


>gi|24644481|ref|NP_731031.1| Rm62, isoform D [Drosophila melanogaster]
 gi|281361218|ref|NP_001163528.1| Rm62, isoform H [Drosophila melanogaster]
 gi|23175946|gb|AAN14331.1| Rm62, isoform D [Drosophila melanogaster]
 gi|51092049|gb|AAT94438.1| RE56857p [Drosophila melanogaster]
 gi|272476832|gb|ACZ94826.1| Rm62, isoform H [Drosophila melanogaster]
          Length = 575

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 145/354 (40%), Gaps = 47/354 (13%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  ++ +   
Sbjct: 183 TGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNT 242

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G  P+  + + L+R       I+I T     D     S    +   +++DE  R   
Sbjct: 243 CVFGGAPKGGQMRDLQR----GCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLD 298

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGD-IDISKITEKPAGRKPIK 459
             F  Q R  ++Q       L+ +AT  P+    L    LG+ I I+  + + +    I+
Sbjct: 299 MGFEPQIRKIVSQIRPDRQTLMWSAT-WPKEVKQLAEDFLGNYIQINIGSLELSANHNIR 357

Query: 460 TVIIPINRIDEVIERLKVVLSE----GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            V+   +   +  E+LK +LS+     +    I   +E K+       V+        F 
Sbjct: 358 QVVDVCDEFSKE-EKLKTLLSDIYDTSESPGKIIIFVETKRR------VDNLVRFIRSFG 410

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHF 571
                IHG  S  +++ V+  F++G   +L+AT V   G+DV     +I     +N+E +
Sbjct: 411 VRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDY 470

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
               +H++ GR GR     +    +    +K +   + VL+        A E+L
Sbjct: 471 ----IHRI-GRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENL 519


>gi|150016621|ref|YP_001308875.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903086|gb|ABR33919.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 369

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 138/325 (42%), Gaps = 49/325 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I +   G+GKTL  L+ +   + +     QA+I+ P   LA Q      K  +   I + 
Sbjct: 42  IAEAATGTGKTLAFLLPLLENINSKSNEIQALILTPTRELAIQITNEANKLKEFNDINIL 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGV 408
            + G    A + K L    +   H+II T     D     +I   KL   I+DE      
Sbjct: 102 PVYGGKDIASQLKKL----NNNIHLIIATPGRLLDHLERKTIDLSKLKTFILDE-----A 152

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            Q L +  K     ++    + +PR    L  ++  D  + K+  +   + PI+  I   
Sbjct: 153 DQMLLMGFKNEVESII----SKMPRKKQLLCFSATIDSSVKKLAYRYM-KDPIEVFIKQD 207

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           +   + IE+  V  ++ KK   +C  ++E  ++ F +++  F           A++H R 
Sbjct: 208 DISLDAIEQDIVETTDRKKRDALCKVLDE--DNPFMAII--FCRTKRRVDELEAVLHTRK 263

Query: 526 SDIDK----------ESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHF 571
            + +K          E +M SF+N   + LIAT V   G+D+   + I    I E+ E +
Sbjct: 264 YNCEKLHSDIPQNKRERIMKSFRNAEIQYLIATDVAARGLDINGITHIYNYDIPESVESY 323

Query: 572 GLAQLHQLRGRVGR-GEEISSCILL 595
               +H++ GR GR GE   +C+ +
Sbjct: 324 ----IHRI-GRTGRAGESGYTCMFI 343


>gi|332291649|ref|YP_004430258.1| DEAD/H associated domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169735|gb|AEE18990.1| DEAD/H associated domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 823

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 139/347 (40%), Gaps = 68/347 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV-----------EAGGQAVIMAPIGILAQQHYEFIKKYT 345
           +L    GSGKT      +               + G +A+ + P+  L+ +      + T
Sbjct: 39  LLNAPTGSGKTYALWFPVVLNYIKKNPDYKTKHKKGLKAIWITPLRSLSNEIELSASRIT 98

Query: 346 QN--TQIIVEIITGNMPQAHRRKALER-----IAHGQAHIII----GTHALFQDSIQYYK 394
           Q+  TQ+ V I  G+ PQ+ R K         I   ++ +++    G   +F+D      
Sbjct: 99  QDLGTQMTVGIRNGDTPQSDRAKQKRSMPDLLITTPESLMLLIASKGYEKVFKDCSA--- 155

Query: 395 LILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
              VIVDE H       GVQ  L L++  T    + +         +  ++G+++ ++  
Sbjct: 156 ---VIVDEWHELLGTKRGVQMELALSRLKTVASDMRIWG-------ISATIGNLEQAREV 205

Query: 450 ----EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW-----------ICPQIEE 494
               E  A R+   +VII  N I++ I    ++  E +   W           + P I  
Sbjct: 206 LLGYESDAFRE---SVIIKAN-INKKITVKSIIPDEMETFPWRGHLGLHLLEYVVPIINN 261

Query: 495 KKES----NFRSVVE----RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            K +    N RS  E    R  + H  +   IA+ HG ++   +  V  + +NG+ K ++
Sbjct: 262 SKTTLLFTNTRSQCEIWFQRILAAHPEYAGEIAMHHGSINKETRTWVEGAIRNGSLKAVV 321

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            T+ +++G+D      II       G+A+  Q  GR G      S I
Sbjct: 322 CTSSLDLGVDFAPVETIIQIGGPK-GVARFLQRAGRSGHSPGKESVI 367


>gi|326941637|gb|AEA17533.1| primosome assembly protein PriA [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 801

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q   I  IL  ++ +     +L G  GSGKT V L ++AA +E G +A+++ P
Sbjct: 262 PFPLTEEQNQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLEKGKEAIVLVP 321

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 322 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 377

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 378 P---FENLGIIIIDEEHESSYKQ 397


>gi|323438897|gb|EGA96632.1| late competence operon protein FA [Staphylococcus aureus O11]
          Length = 317

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 147/334 (44%), Gaps = 72/334 (21%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L    G+GKT +    +  A   G    I++P                    ++VEI +
Sbjct: 6   LLYAVTGAGKTEMMFQGIQYARRQGDNIAIVSP-----------------RVDVVVEI-S 47

Query: 357 GNMPQAHRRKALERIAHGQA------HIIIGT-HALFQDSIQYYKLILVIVDEQHRF--- 406
             +  A   + ++ I H Q+      H ++ T H L++   Q++  I +  DE   F   
Sbjct: 48  KRIKDAFLNEDID-ILHQQSSQQFEGHFVVCTVHQLYRFK-QHFDTIFI--DEVDAFPLS 103

Query: 407 ---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
               +QQ LK + K      + MTATP P+ L    L +I    I + PA R   K++ +
Sbjct: 104 MDKSLQQALKSSSKVEHA-TIYMTATP-PKQL----LSEIPHENIIKLPA-RFHKKSLPV 156

Query: 464 PI--------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSL 510
           P         N+I +++ R+            +  QI +++ +     N  ++++ F S+
Sbjct: 157 PKYRYFKLNNNKIQKMLYRI------------LQDQINKQRYTLVFFNNIEAMIKTF-SV 203

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           ++H  + +  +H    D+ +   ++  +NG   ++  TT++E G  + +  +++I+ A  
Sbjct: 204 YKHKITKLTYVHS--EDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVID-AHQ 260

Query: 571 FGLAQLHQLRGRVGRGEEI-SSCILLYHPPLSKN 603
           +    L Q+ GRVGR  E  +  +L +H  +S N
Sbjct: 261 YTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMN 294


>gi|318054604|ref|NP_001187599.1| eukaryotic initiation factor 4a-iii [Ictalurus punctatus]
 gi|308323464|gb|ADO28868.1| eukaryotic initiation factor 4a-iii [Ictalurus punctatus]
          Length = 389

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 145/342 (42%), Gaps = 61/342 (17%)

Query: 273 PTKSQESAIKDILQ--DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIM 327
           P+  Q+ AIK I++  D+S         Q   G+GKT    +++   ++      QA+I+
Sbjct: 39  PSAIQQRAIKQIIKGRDVSA--------QSQSGTGKTATFCVSVLQCLDIQVRETQALIL 90

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA Q  + +        +      G     +  + + ++ +GQ H++ GT     
Sbjct: 91  APTRELAGQIQKVLLALGDFMNVQCHACIGG---TNVGEDIRKLDYGQ-HVVAGTPGRVF 146

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVL 437
           D I+   L        +L   DE    G ++++    +   P   V+L++AT     L +
Sbjct: 147 DMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEM 206

Query: 438 TSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGK 483
           T+    D  +I  K      + IK   + + R +   + L             +  +  +
Sbjct: 207 TNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKR 266

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  +
Sbjct: 267 KVDWL---TEKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGASR 307

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 308 VLISTDVWAGGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 348


>gi|294666446|ref|ZP_06731689.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292603752|gb|EFF47160.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 458

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 44/292 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + +++      N ++
Sbjct: 43  IAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQVGKQLRRLATGIPNMKL 102

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +V  +TG MP   +  +LE  AH    +++GT    Q+  +   L L     +++DE  R
Sbjct: 103 VV--LTGGMPLGPQLASLE--AH-DPQVVVGTPGRIQELARKLALHLGGVRTLVLDEADR 157

Query: 406 F---GVQQRLKLTQKATAPH--VLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKP 457
               G ++ ++        H   LL +AT  P   RTL    L              ++P
Sbjct: 158 MLDMGFEEPIREIASRCDKHRQSLLFSAT-FPDSIRTLARELL--------------KEP 202

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHE 512
           ++  +   +   E+ ++   V    ++       +    ES     N R  V+      +
Sbjct: 203 VEITVEGADSAPEIDQQFFEVDPTYRQKAVAGLLLRFNPESSVVFCNTRKEVDEVAGSLQ 262

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            F  S   +HG M   D++ V+  F N +C +L+A+ V   G+DV D S ++
Sbjct: 263 EFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVV 314


>gi|259506519|ref|ZP_05749421.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
 gi|259165939|gb|EEW50493.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
          Length = 424

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 138/347 (39%), Gaps = 50/347 (14%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LA Q  E +++   N  + V    G  P   +  ALE        +++GT
Sbjct: 84  RALVIVPTRELAVQVGEDLERAAVNLPLKVFTFYGGTPYEEQIDALET----GVDVVVGT 139

Query: 383 HALFQDSIQYYKL------ILVI--VDEQHRFGVQQRL-KLTQKATAPH-VLLMTAT-PI 431
                D  Q   L      ILV+   DE    G    + K+ +  T  H  +L +AT P 
Sbjct: 140 PGRLLDLYQRGALRLDKVAILVLDEADEMLDLGFLPDIEKIMRALTHKHQTMLFSATMPG 199

Query: 432 PRTLVLTSLGDIDI---SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           P   +  S  D  +   ++  +  A     + ++   +R+D+     +++ + G+    I
Sbjct: 200 PILTLARSFLDKPVHIRAESADSAATHATTRQIVFQAHRMDKEAVTARILQARGRGKTII 259

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +         +  R       FT  +  +HG M    +E  +++F++G   +L+AT
Sbjct: 260 FARTKRTAAQVAEDLAAR------GFT--VGSVHGDMGQPARERSLNAFRSGKIDILVAT 311

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+ D + +I        +  +H++ GR GR     + + L             
Sbjct: 312 DVAARGIDIDDVTHVINYQTPDDPMTYVHRI-GRTGRAGHTGTAVTLV------------ 358

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
                   G+   +E LK       L + Q   P++    PEL+D+L
Sbjct: 359 --------GY---DELLKWTAINNELELGQPNPPQWFSTSPELYDTL 394


>gi|242041163|ref|XP_002467976.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
 gi|241921830|gb|EER94974.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
          Length = 766

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 127/315 (40%), Gaps = 51/315 (16%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   ++ M   +        E G   VI AP   LA Q Y   KK+ +   + V 
Sbjct: 265 TGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLRVA 324

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G + +  + K L+        ++I T     D     +++ ++   +++DE  R   
Sbjct: 325 AVYGGVSKFDQFKELK----AGCEVVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFD 380

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKT 460
             F  Q R  + Q       LL +AT +P     L    L D              PI+ 
Sbjct: 381 LGFEPQIRSIVGQIRPDRQTLLFSAT-MPYKVERLAREILTD--------------PIRV 425

Query: 461 VIIPINRIDEVIERLKVVL-SEGKKAYWICPQ----IEEKKESNFRSVVERFNSLHEHFT 515
            +  +   +E I+++  VL S+ +K  W+  +    I++     F S   R + + +   
Sbjct: 426 TVGQVGGANEDIKQVVNVLPSDVEKMPWLLEKLPGMIDDGDVLVFASKKARVDEIEKELN 485

Query: 516 SS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                IA +HG      +   +  FK+GT  +L+AT V   G+D+   SI  + N +   
Sbjct: 486 QRGFRIAALHGDKDQASRMETLQKFKSGTYHVLVATDVAARGLDI--KSIKTVVNFDIAK 543

Query: 573 LAQLHQLR-GRVGRG 586
              +H  R GR GR 
Sbjct: 544 EMDMHIHRIGRTGRA 558


>gi|218676896|ref|YP_002395715.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218325164|emb|CAV27059.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 689

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 138/349 (39%), Gaps = 53/349 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +       QA+IMA
Sbjct: 56  SPTPIQAAAIPLLLEGRDA------LGKAQTGTGKTAAFSLPLLNKINLNQHKPQAIIMA 109

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   ++ + + V  I G      + +AL R     AHI++GT    +
Sbjct: 110 PTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRALSR----GAHIVVGTPGRVK 165

Query: 388 DSIQYYKLILVIVDEQHRF---GVQQRLK----------LTQKATAPHVLLMTAT--PIP 432
           D +   +L L   DE H F      + LK          L Q   +   +L +AT  P+ 
Sbjct: 166 DLLTRDRLHL---DEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPMV 222

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLS-EGKKAYWICP 490
           +T+V   L              R P K  +   N  +D+V +   VV   E  +A     
Sbjct: 223 KTIVDRYL--------------RNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLL 268

Query: 491 QIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + EE   S      R   ER            A +HG +    +E  +D  K G   +L+
Sbjct: 269 ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 328

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           AT V+  G+DV   + +   +      + +H++ GR GR       ILL
Sbjct: 329 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILL 376


>gi|195127173|ref|XP_002008043.1| GI12051 [Drosophila mojavensis]
 gi|193919652|gb|EDW18519.1| GI12051 [Drosophila mojavensis]
          Length = 797

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 133/322 (41%), Gaps = 47/322 (14%)

Query: 302 VGSGKT------LVALIAMAAAVEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT      L+  +     + AG   +  I+AP   L+ Q Y   KK+ +   I V 
Sbjct: 321 TGSGKTAAFIWPLLTHLMDQRELRAGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVV 380

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRF-- 406
              G   +  + KALE+       I++ T     D ++       ++  +++DE  R   
Sbjct: 381 CCYGGGSKWEQSKALEQ----GCEIVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFH 436

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITE---KPAGRKPIKT 460
            G + +++       P    LL +AT   R   L      D  +I +     A +   + 
Sbjct: 437 MGFEPQVRSICNHVRPDRQTLLFSATFKKRIERLARDILTDPVRIVQGDLNEANQDITQH 496

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           V +   P+ + + ++  L   LSEG    ++  + + +  +N   +V+ +N L       
Sbjct: 497 VYVFPNPLQKWNWLLCHLVKFLSEGAVLVFVTKKADAETVAN-NLLVKEYNCL------- 548

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-- 575
             ++HG M   D+  V+  FK   C +L+AT V   G+D     I  I N  ++ +A+  
Sbjct: 549 --LLHGDMDQADRNKVITQFKRKECDILVATDVAARGLD-----IPHIRNVVNYDIARDI 601

Query: 576 -LHQLR-GRVGRGEEISSCILL 595
             H  R GR GR  E  +   L
Sbjct: 602 DTHTHRIGRTGRAGEKGNAYTL 623


>gi|331696881|ref|YP_004333120.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951570|gb|AEA25267.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 659

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 120/291 (41%), Gaps = 30/291 (10%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHGQAH 377
            +++AP   LA Q  E I +Y +  +  V  + G  P   +  AL+R         G+A 
Sbjct: 166 GLVLAPTRELAMQVTEAIARYGKGLRARVLAVYGGAPIGPQLGALKRGVDVVVATPGRAI 225

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPR-- 433
            +I   AL  D ++   ++L   DE    G  + ++   +AT      +L +AT +PR  
Sbjct: 226 DLINRGALSLDELEV--VVLDEADEMLDMGFVEDIETILQATPDTRQAVLFSAT-MPRRI 282

Query: 434 -TLVLTSLGDIDISKI--TEKPAGRKPI---KTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             L  T L D  + +I   E P G  P       ++P +     + R+ + L     A  
Sbjct: 283 EVLARTYLTDPVLVRIQREEVPEGEAPRVRQTAYMVPRSHTTAALGRI-LELERPTAAIV 341

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C     +  ++  +V E          +    +HG M    +  V+D  +NG   LL+A
Sbjct: 342 FC-----RTRADVDAVTEALTGRGLRAEA----LHGGMDQEHRTRVVDRLRNGRTDLLVA 392

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           T V   G+D+   + ++  +      + +H++ GRVGR       I L  P
Sbjct: 393 TDVAARGLDIDQLTHVVNHDVPKSPESYVHRI-GRVGRAGREGVAITLVAP 442


>gi|322796780|gb|EFZ19207.1| hypothetical protein SINV_02979 [Solenopsis invicta]
          Length = 605

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 134/338 (39%), Gaps = 70/338 (20%)

Query: 302 VGSGKTLVALIAMAAAV-------EAGGQAVIMAPIGILAQQHYEFIK---KYTQNTQII 351
            GSGKTL  LI     +         G   +IM+P   L+ Q +  +K   KY  +T  +
Sbjct: 139 TGSGKTLAFLIPAVELIYKLKFMPRNGTGVIIMSPTRELSMQTFGVLKELMKYHYHTYGL 198

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHR 405
           +      M  A R+   +++A G  +II+ T     D +Q      Y  L  +++DE  R
Sbjct: 199 L------MGGASRQTEAQKLAKG-VNIIVATPGRLLDHLQNTPDFLYKNLQCLVIDEADR 251

Query: 406 F---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
               G ++ LK  +         +L +AT   +  ++T+L              ++PI  
Sbjct: 252 ILDIGYEEELKQIINILPKRRQTMLFSATQTQKVAMITTLA-----------LKKEPIYV 300

Query: 461 VIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEK---------KESNFRSVVERFNS- 509
                  +D+  E   V   EG ++ Y  CP   EK         K++  + ++  F+S 
Sbjct: 301 ------GVDDDKEMATV---EGLQQGYVACPS--EKRFLLLFTFLKKNRKKKIMVFFSSC 349

Query: 510 ----LHEHFTSSIAI----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
                H    + I +    IHG+     + +    F N +   L+ T V   G+D+ D  
Sbjct: 350 MSVKFHHELLNYIDLPVMSIHGKQKQTKRTTTFYQFCNASTGTLLCTDVAARGLDIPDVD 409

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            I+  +        +H++ GR  RGE  S   LL   P
Sbjct: 410 WIVQYDPPDDPKEYIHRV-GRTARGEGSSGHALLILRP 446


>gi|307610952|emb|CBX00571.1| hypothetical protein LPW_22891 [Legionella pneumophila 130b]
          Length = 468

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 142/328 (43%), Gaps = 73/328 (22%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKK---YTQNTQI 350
           I Q   GSGKT    +++   ++      QA+++ P   LA+Q  + I++   +  N +I
Sbjct: 52  IAQAKTGSGKTAAFALSLLNNLKISFFAVQALVLCPTRELAEQVSQAIRRLACFMPNVKI 111

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR 405
           I   ++G +P    +  L+ + HG AHII+GT       L   S+   ++  +++DE  R
Sbjct: 112 IN--LSGGIPM---QPQLDSLRHG-AHIIVGTPGRILKHLKNASLDLSQVKALVLDEADR 165

Query: 406 F---------------GVQQRLKLTQKATAPHVLLMTATPI---PRTL-VLTSLGDIDIS 446
                             +QR  L   AT P  +   +      P+ + V T L +IDI 
Sbjct: 166 MLDMGFFDDIKNIISVCPKQRQTLLFSATYPEEIKQLSKQFMKNPKEVYVETPLDEIDIE 225

Query: 447 K----ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +    +T++      +K++++    +  +I                C   ++  E   + 
Sbjct: 226 QHFYEVTKQTQKFPLLKSLLLHYQPVSVLI---------------FCNTKQQTIEVTDQL 270

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + E F        S+IA+ +G M  I+++  +  F N +C +L+AT V   G+D+ + S 
Sbjct: 271 INEGF--------SAIAL-NGDMEQIERDLAVLRFANQSCSILVATDVAARGLDIKELSA 321

Query: 563 IIIENAEHFGLAQLHQLR----GRVGRG 586
           +I     +F LA  H +     GR GR 
Sbjct: 322 VI-----NFDLAFDHDVHIHRIGRTGRA 344


>gi|299117107|emb|CBN73878.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 467

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 139/344 (40%), Gaps = 53/344 (15%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     + A        G   +++AP   LA Q  E   K+  ++ I   
Sbjct: 107 TGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLVVAPTRELAVQIKEECDKFGGSSDIKNT 166

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G +P   +R  +  ++ G   I+I T     D ++  K  L     +++DE  R   
Sbjct: 167 CVYGGVP---KRSQVYDLSRG-VEIVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLD 222

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A    R     ++G +++S       
Sbjct: 223 MGFEPQIRSIVSQIRPDRQTLMWSATWPKEVEGLARDFLRNYYQVTVGSLELS------- 275

Query: 454 GRKPIKTVIIPINRIDEVIERLKVV---LSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             K I+ V+     I E   + +V+   L E   A  +   +E KK  +  +      SL
Sbjct: 276 ANKDIQQVV----EIVEDFGKYRVLAKHLQEHNNAGRVLIFVETKKGCDALT-----RSL 326

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 ++AI HG  +  +++ V+  FK G   +L+AT V   G+DV D  ++I  +   
Sbjct: 327 RHEGWPALAI-HGDKNQSERDRVLHDFKEGRSLILVATDVAARGLDVKDIRMVINFDFPK 385

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
              + +H++ GR GR     + I  +    SK +   + +LK  
Sbjct: 386 EMESYVHRI-GRCGRAGHKGTAISFFAGKNSKCARELIRILKQA 428


>gi|281346961|gb|EFB22545.1| hypothetical protein PANDA_001614 [Ailuropoda melanoleuca]
          Length = 765

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 137/350 (39%), Gaps = 83/350 (23%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++            Q +++AP   LA Q        T+ 
Sbjct: 200 IAQARTGTGKTFSFAIPLIEKLQGEMQDRKRGRAPQVLVLAPTRELANQVSRDFSDITR- 258

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +   +ER+ +G   I++GT    +D +Q  KL L     V++DE
Sbjct: 259 -KLAVACFYGGTPYGGQ---IERMRNG-IDILVGTPGRIKDHLQNGKLDLTKLKHVVLDE 313

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTAT------PIPRTLVLTSLGDIDIS 446
             +         V++ L +  K  +   P  LL +AT       + +  + ++   +D+ 
Sbjct: 314 VDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDL- 372

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
                  G+K  KT I         +E L +      K +W       ++ +    V+  
Sbjct: 373 ------IGKKTQKTAI--------TVEHLAI------KCHWT------QRAAVIGDVIRV 406

Query: 507 FNSLH-------------EHFTSSIAI------IHGRMSDIDKESVMDSFKNGTCKLLIA 547
           ++  H             +  + +++I      +HG +    +E  +  F+NG   +L+A
Sbjct: 407 YSGFHGRTIIFCETKKEAQELSQNVSIKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVA 466

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           T V   G+D+ +  +++  +      + +H+  GR GR      CI  Y 
Sbjct: 467 TNVAARGLDIPEVDLVVQSSPPKDVESYIHR-SGRTGRAGRTGICICFYQ 515


>gi|242080665|ref|XP_002445101.1| hypothetical protein SORBIDRAFT_07g004090 [Sorghum bicolor]
 gi|241941451|gb|EES14596.1| hypothetical protein SORBIDRAFT_07g004090 [Sorghum bicolor]
          Length = 1062

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 135/317 (42%), Gaps = 55/317 (17%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++ M   V+         G   +IMAP   L  Q +  IKK+++   I   
Sbjct: 483 TGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKVLGINCV 542

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            I G    A +   L+R     A I++ T     D +           ++  +++DE  R
Sbjct: 543 AIYGGSGVAQQISELKR----GAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADR 598

Query: 406 F---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKP-----AGR 455
               G + ++    + T P    +L +AT  PR +      +I   K+  KP      GR
Sbjct: 599 MFDMGFEPQITRIVQNTRPDRQTVLFSAT-FPRQV------EILARKVLTKPVEIQVGGR 651

Query: 456 KPIK---TVIIPINRIDEVIERLKVVLSE----GKKAYWICPQIEEKKESNFRSVVERFN 508
             +    T ++ +    E   RL  +L E    GK   ++  Q  +K +S  +       
Sbjct: 652 SVVNKDITQLVEVRPDTERFFRLLELLGEWYVKGKILVFVHSQ--DKCDSLLKD------ 703

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L +H    +++ HG     D+ES +  FK+  C LLIAT+V   G+DV +  +++  + 
Sbjct: 704 -LFQHGYPCLSL-HGGKDQTDRESTIADFKSNVCSLLIATSVAARGLDVKELELVVNYDV 761

Query: 569 EHFGLAQLHQLRGRVGR 585
            +     +H++ GR GR
Sbjct: 762 PNHYEDYVHRV-GRTGR 777


>gi|145352838|ref|XP_001420742.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580977|gb|ABO99035.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 413

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 126/319 (39%), Gaps = 60/319 (18%)

Query: 302 VGSGKTLVALIA--MAAAVEAGGQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+  L    M  A    G+       + +AP   LA Q  E   K+  +  +   
Sbjct: 48  TGSGKTVAFLFPGLMHIAERGNGRNARGPMMLALAPTRELATQIQEECMKFGSSCGVGSV 107

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G  P+  + + L      +  I I T     D ++   + +     V++DE  R   
Sbjct: 108 CLYGGAPKGRQLQQL----RNRPQICIATPGRLNDLLESRMVDMSSATYVVLDEADRMLD 163

Query: 407 -GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDID-------IS 446
            G + +++            L   AT P  ++  AT I    +  ++GD D       I+
Sbjct: 164 MGFEPQIRKILQHVPVDRQTLFFTATWPKAVIRVATAILTNPIQVNIGDTDQLVANKDIT 223

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
           +  E  +G +  K ++  +N   E  + LK ++                    F S    
Sbjct: 224 QTIEVCSGFEKEKRLMEILNNPPEGCDPLKALV--------------------FCSTKRM 263

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            + L     +   IIHG     +++ +++ F+ G   +L+AT V   G+DV D +++I  
Sbjct: 264 CDQLGRSVGNLAGIIHGDKEQRERDWILNQFRQGRTPVLVATDVAARGLDVKDCNLVINY 323

Query: 567 NAEHFGLAQLHQLRGRVGR 585
           +  +     +H++ GR GR
Sbjct: 324 DFPNQIEDYVHRI-GRTGR 341


>gi|157827132|ref|YP_001496196.1| primosome assembly protein PriA [Rickettsia bellii OSU 85-389]
 gi|157802436|gb|ABV79159.1| primosome assembly protein PriA [Rickettsia bellii OSU 85-389]
          Length = 648

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 106/234 (45%), Gaps = 31/234 (13%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           PI V+    QKI  N    P  S+E   K  LQ ++  N+ + +++G  GSGKT V    
Sbjct: 105 PIKVK---EQKINNNFTL-PDLSEEQ--KQALQMLNDSNKPI-LIKGVTGSGKTEVYFHL 157

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +A  +  G QA++M P   L+ Q    I ++ +       I   ++ +A ++  L  I  
Sbjct: 158 IAEYLAKGKQALVMLPEIALSTQ---IINRFKERFGFDPIIWNSSVTKAQKKMILRGILE 214

Query: 374 GQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--TA--------PH 422
            +  I+IG   +LF   + +  L L+++DE+H    +Q   +   A  TA          
Sbjct: 215 DKVKIVIGARSSLF---LPFKNLGLIVIDEEHDDSYKQDDGVLYNARDTAIVRSTFDKAQ 271

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP-INRIDEVIERL 475
           ++L +ATP   T+   ++G   +  ++ +       K  ++P I  ID   E L
Sbjct: 272 IVLCSATPSIETMYNANIGKYSVINLSSR------YKNAVLPNIEMIDMTKEEL 319


>gi|22651415|gb|AAL05260.1| QDE3-like protein [Blumeria graminis]
          Length = 1632

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 127/337 (37%), Gaps = 67/337 (19%)

Query: 302  VGSGKTLV-ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
             G GK+L   L A+  + +  G  ++++P+  L     E ++K +    I    I G+  
Sbjct: 823  TGGGKSLCYQLPAVVQSGKTKGVTIVVSPLLSLMHDQVEHLRKNS----IQAATINGDTD 878

Query: 361  QAHRRKALE--RIAHGQAHI--------IIGTHALFQDSI----QYYKLILVIVDEQH-- 404
             A RR+ +   R  H + HI        ++       D +    Q  KL   ++DE H  
Sbjct: 879  SAERREIMNNLRQQHPEQHIQLLYVTPEMVSQSGQMGDILSSLNQRSKLARFVIDEAHCV 938

Query: 405  -RFG--------VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
             ++G           RL+    +     L  TAT   +  V+++LG            G+
Sbjct: 939  SQWGHDFRKEYIALSRLRKDFPSVPIMALTATATENVKNDVISNLG-----------MGK 987

Query: 456  KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS------------V 503
             PI       NR +   E   V    G+K   +  +I +     +R              
Sbjct: 988  PPI--FSQSFNRPNLYYE---VRPKSGRKMPELLKEIADLVTRKYRGQTGIIYTLSRKGC 1042

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
             +    L + F  S+   H  M   +K  V   +++G  ++++AT    +GID  D   +
Sbjct: 1043 EDMAKKLSKEFNISVHYYHAGMKSEEKTKVTRDWQSGKLQVVVATIAFGMGIDKPDVRFV 1102

Query: 564  IIENAEHF----GLAQLHQLRGRVGRGEEISSCILLY 596
            I     H+     L   +Q  GR GR  + S C L Y
Sbjct: 1103 I-----HYTIPKSLEGYYQETGRAGRDGKKSGCYLYY 1134


>gi|162462542|ref|NP_001104874.1| translation initiation factor [Zea mays]
 gi|2286151|gb|AAB64289.1| translation initiation factor [Zea mays]
          Length = 414

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 126/314 (40%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 82  IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 141

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 142 ACVGGTSV----REDQRILGSGVHVVVGTPGRVFDMLRRQSLRPDNIKMF--VLDEADEM 195

Query: 404 HRFGVQQRL-KLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++  + Q   A   V + +AT  P  L +T        K   KP        V
Sbjct: 196 LSRGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEITR-------KFMNKP--------V 240

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K       K  W    + +  E+          N R  V+      
Sbjct: 241 RILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKM 300

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 301 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 360

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 361 PENYLHRI-GRSGR 373


>gi|24644485|ref|NP_731033.1| Rm62, isoform C [Drosophila melanogaster]
 gi|24644487|ref|NP_731034.1| Rm62, isoform F [Drosophila melanogaster]
 gi|45551833|ref|NP_731035.2| Rm62, isoform B [Drosophila melanogaster]
 gi|10727151|gb|AAG22212.1| Rm62, isoform F [Drosophila melanogaster]
 gi|23175947|gb|AAN14332.1| Rm62, isoform C [Drosophila melanogaster]
 gi|25012758|gb|AAN71471.1| RE68337p [Drosophila melanogaster]
 gi|45446365|gb|AAF51926.2| Rm62, isoform B [Drosophila melanogaster]
 gi|220950572|gb|ACL87829.1| Rm62-PB [synthetic construct]
          Length = 578

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 145/354 (40%), Gaps = 47/354 (13%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  ++ +   
Sbjct: 186 TGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNT 245

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G  P+  + + L+R       I+I T     D     S    +   +++DE  R   
Sbjct: 246 CVFGGAPKGGQMRDLQR----GCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLD 301

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGD-IDISKITEKPAGRKPIK 459
             F  Q R  ++Q       L+ +AT  P+    L    LG+ I I+  + + +    I+
Sbjct: 302 MGFEPQIRKIVSQIRPDRQTLMWSAT-WPKEVKQLAEDFLGNYIQINIGSLELSANHNIR 360

Query: 460 TVIIPINRIDEVIERLKVVLSE----GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            V+   +   +  E+LK +LS+     +    I   +E K+       V+        F 
Sbjct: 361 QVVDVCDEFSKE-EKLKTLLSDIYDTSESPGKIIIFVETKRR------VDNLVRFIRSFG 413

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHF 571
                IHG  S  +++ V+  F++G   +L+AT V   G+DV     +I     +N+E +
Sbjct: 414 VRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDY 473

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
               +H++ GR GR     +    +    +K +   + VL+        A E+L
Sbjct: 474 ----IHRI-GRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENL 522


>gi|284038209|ref|YP_003388139.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283817502|gb|ADB39340.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 447

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F  L   F   + +IH   +   +   +++FK GT ++LIAT +I  GIDV D S ++  
Sbjct: 259 FEQLESGFPDQVGVIHSNKAQNKRFEAVNNFKAGTYRILIATDIIARGIDVTDVSHVVNF 318

Query: 567 NAEHFGLAQLHQLRGRVGRGE 587
           +        +H++ GR GR +
Sbjct: 319 DLPDLPENYIHRI-GRTGRAD 338


>gi|239616876|ref|YP_002940198.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF
           19.5.1]
 gi|239505707|gb|ACR79194.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF
           19.5.1]
          Length = 716

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 153/359 (42%), Gaps = 69/359 (19%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVI---M 327
           S T  Q+ AI +I+   S KN +  I+ G   SGKT  A+I +   +    G+ +I    
Sbjct: 20  SLTAIQKKAIPEII---SGKNVL--IIAG-TASGKTEAAMIPILQKMSKNRGKGIICIYF 73

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP+  L     + +K   +     V    G++ Q+ +  AL+     +A I++ T    +
Sbjct: 74  APLKALINDIAQRLKGIFERFDFYVGKWHGDVSQSDKIYALK-----EAKILVTTPESME 128

Query: 388 DSIQ--------YYKLILVIVDEQHRF-----GVQ-----QRLKLTQKATAPHVLLMTAT 429
             +         +  L  V++DE H F     G Q     +RL++  +     V +    
Sbjct: 129 GLLTSKKFSPEIFSDLRFVVIDEVHNFANNPRGAQLMSLIERLQIISRNEIQRVAMSATV 188

Query: 430 PIPRTLV--LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER---LKVVLSEGKK 484
             P  L+  +T   + +   I    A R+ I        R +E IE    +K +LSE KK
Sbjct: 189 GNPEKLLQWITGCSERESVVIETNSASRREINV------RKEEEIELSDLVKNLLSENKK 242

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFT-----SSIAII--HGRMSDIDKESVMDSF 537
              I    + +KE              EH+T     S I  +  H  +S   +ES+  +F
Sbjct: 243 ---IIIFADSRKEV-------------EHYTRKLLDSGIEALPHHSSVSKTIRESIEKAF 286

Query: 538 K-NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           K N    ++IAT+ +E+GIDV +   +I  N  +   + L ++ GR GR  +IS   +L
Sbjct: 287 KANDKSCVIIATSTLELGIDVGNVDTVIFLNVPYSTSSFLQRI-GRSGRKSKISKAWIL 344


>gi|171691961|ref|XP_001910905.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945929|emb|CAP72730.1| unnamed protein product [Podospora anserina S mat+]
          Length = 559

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/381 (22%), Positives = 154/381 (40%), Gaps = 77/381 (20%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMA 328
           P+K QE A+  ++ D         I Q   G+GKT   ++   A V+       QA+++A
Sbjct: 175 PSKIQERALPLMISDPPTN----MIAQSQSGTGKTAAFVLTCLARVDLAKPQQPQALLLA 230

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q    ++   Q  + +  I+   +P    R+   R     A I++GT     D
Sbjct: 231 PSRELARQIQGVVQTIGQFCENL--IVQAAIPGEVSRETGVR-----ASIVVGTPGTVMD 283

Query: 389 SIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT---LVLTSL 440
            I+       +L L+++DE      QQ L            +   T +P+T   L+ ++ 
Sbjct: 284 LIRRRQFDVSQLKLLVIDEADNMLDQQGLG--------EQCVRVKTLLPKTIQILLFSAT 335

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKKESN 499
              ++ +  ++ A +             +E+  R   +  +G  + Y  CP  +E K+ +
Sbjct: 336 FPDNVHRFAQQFAPKA------------NEIKLRHTELTVKGISQMYMDCP--DEGKKYD 381

Query: 500 ----------------FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
                           F    E  N +     +    ++ +HG     ++++++D F++G
Sbjct: 382 VLCKLYGLMTIGSSVIFVRTRESANEIQRRMEADGHKVSALHGAFEGQNRDALLDDFRSG 441

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ--------LHQLRGRVGRGEEISSC 592
             K+LI T V+  GIDV   S++I  +    G           LH++ GR GR   +   
Sbjct: 442 RSKVLITTNVLARGIDVSSVSMVINYDIPMKGPGAGVPDYETYLHRI-GRTGRFGRVGVS 500

Query: 593 ILLYHPPLSKNSYTRLSVLKN 613
           I   +    + SY  LS + N
Sbjct: 501 ISFVY---DRRSYEALSDIAN 518


>gi|154324134|ref|XP_001561381.1| eukaryotic initiation factor 4A [Botryotinia fuckeliana B05.10]
 gi|160395528|sp|A6RJ45|IF4A_BOTFB RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|150842695|gb|EDN17888.1| eukaryotic initiation factor 4A [Botryotinia fuckeliana B05.10]
          Length = 398

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 130/291 (44%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +        +   
Sbjct: 66  IAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECH 125

Query: 354 IITGNMPQAHRRKALERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
              G        KAL+          G+ H +I    L  DS++ +  +L   DE    G
Sbjct: 126 ACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDSMKMF--VLDEADEMLSRG 183

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             +++    +L  ++T   V+L++AT +P+          D+ ++T K   R P++   I
Sbjct: 184 FTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLEVTTKFM-RDPVR---I 226

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-------FRSVVERFNSLHEHFTS 516
            + + +  +E +K      +K  W    + +  E+        F +   + + L +  T+
Sbjct: 227 LVKKAELTLEGIKQFYIAVEKEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTA 286

Query: 517 ---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 287 RDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 337


>gi|88802866|ref|ZP_01118393.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88781724|gb|EAR12902.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 447

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 134/320 (41%), Gaps = 55/320 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +PT+ QE  I  +L D   K  ++ + +   G+GKT    + +   ++      QA+I+A
Sbjct: 25  TPTEIQEKVIPIVLND---KEDIVALAK--TGTGKTAAFGLPLLQLIDVNNDAIQAIILA 79

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   L QQ    +  + ++T Q+ +  + G +P    +  +ER+     HII+ T     
Sbjct: 80  PTRELGQQIAANLISFAEHTSQVSIATLCGGIP---IKPQIERLKEA-THIIVATPGRLA 135

Query: 388 D----------SIQYYKLILVIVDEQHRF------GVQQRLKLTQKATAPHVLLMTATPI 431
           D          SI Y+     I+DE          G+   +K   KA      L TAT +
Sbjct: 136 DLVKREAIDIKSISYF-----ILDEADEMVTALKEGLDSIIKEIPKAR--RTFLFTAT-L 187

Query: 432 PRTL-------VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           P TL       +   +  I+ +  T    G      V+ PI +++ ++  L      G++
Sbjct: 188 PGTLKQLIQNYMAPKVIQIEANMTTLGHQGIDHQYVVVAPIEKLEVLLHFLNS--KAGQR 245

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
               C       + +    + +F+S           IHG ++   ++ +M  F++G   +
Sbjct: 246 GIIFCKTKAAVNKLSKNLAINKFSS---------GAIHGSLTQGIRDRIMGQFRDGYIDI 296

Query: 545 LIATTVIEVGIDVVDASIII 564
           L+AT +   GIDV D S ++
Sbjct: 297 LVATDLAARGIDVKDLSYVV 316


>gi|114794876|pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
           A Resolution
 gi|114794877|pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
           A Resolution
 gi|116668327|pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
           A Resolution
          Length = 410

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 60  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 113

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 114 TRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 166

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   P   V+L++AT     L 
Sbjct: 167 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 226

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEG 482
           +T+    D  +I  K      + IK   + + R +              I +  +  +  
Sbjct: 227 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 286

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 287 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 327

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 328 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 369


>gi|221059537|ref|XP_002260414.1| helicase [Plasmodium knowlesi strain H]
 gi|193810487|emb|CAQ41681.1| helicase, putative [Plasmodium knowlesi strain H]
          Length = 528

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 134/315 (42%), Gaps = 39/315 (12%)

Query: 297 ILQGDVGSGKTL-------VALIAMAAAVEAGGQAV-IMAPIGILAQQHYEFIKKYTQNT 348
           I + + GSGKTL       V ++A  +     G  V ++AP   LA+Q  +   K++  +
Sbjct: 154 IGKAETGSGKTLAFILPAFVHILAQPSLKYGDGPIVLVLAPTRELAEQIRQECVKFSVES 213

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQ 403
           +I      G +P++ +  AL++      HI+I         L Q+     ++  +++DE 
Sbjct: 214 KIRNTCAYGGVPKSGQIYALKQ----GVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEA 269

Query: 404 HR-----FGVQQRLKLTQKATAPHVLLMTAT------PIPRTLVLTSLGDIDISKITEKP 452
            +     F +Q R  + Q       L+ +AT       + R L       +++  +T   
Sbjct: 270 DKMLDMGFEIQIRKIVEQIRPDRQTLMWSATWPKEVQSLARDLCKQQPIHVNVGSLTLTA 329

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLH 511
             R  IK  I  I    E I  LK++L    +    I   +E KK ++F +   R + + 
Sbjct: 330 CRR--IKQEIYLIEE-HEKIANLKLLLQRIFRDNDRIIVFVETKKNADFITKALRLDGV- 385

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                    IHG     ++  V++ FK G   +LIAT V   G+D+ D   ++  +  + 
Sbjct: 386 -----PALCIHGDKKQDERRWVLNDFKTGKSPILIATDVASRGLDIKDVKYVVNFDFPNQ 440

Query: 572 GLAQLHQLRGRVGRG 586
               +H++ GR GR 
Sbjct: 441 IEDYVHRI-GRTGRA 454


>gi|114569901|ref|YP_756581.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris
           MCS10]
 gi|114340363|gb|ABI65643.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
          Length = 452

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 125/301 (41%), Gaps = 51/301 (16%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I++P   L+ Q  E ++ Y+++ ++   ++ G +    + +AL +       +++ T
Sbjct: 77  RALILSPTRELSAQILENVRGYSRHMRVSSTLVVGGVKPGPQIRALSK----GVDVLVAT 132

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKL--------------TQKATAPHV 423
                D +Q   + L     +I+DE       Q L L               ++ TA   
Sbjct: 133 PGRLLDLMQSGAVKLSETKILILDE-----ADQMLDLGFFPAIRKIVSFLPNKRQTA--- 184

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           LL    P P   +   + D D  +++  PA R        PI RI++ +    V+L +  
Sbjct: 185 LLSATMPKPIRALAQEMLD-DPKEVSVAPASR--------PIERIEQSV----VLLPKES 231

Query: 484 KAYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           K   +   + ++        S  +   ++ N     +    A IHG  S   +   +D F
Sbjct: 232 KKDLLLELMSDRAVERAIVFSRTKHGADKINRHLVDYGLKSAAIHGNKSQAQRIKALDGF 291

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  K+L+AT +   GIDV + S ++  +  +   + +H++ GR  R  +    + +  
Sbjct: 292 KTGAVKILVATDIAARGIDVDNVSHVVNHDLPNLPESYVHRI-GRTARAGKSGVAVSMCE 350

Query: 598 P 598
           P
Sbjct: 351 P 351


>gi|19698881|gb|AAL91176.1| eukaryotic translation initiation factor [Arabidopsis thaliana]
          Length = 412

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 125/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 80  IQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 139

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 140 ACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMF--VLDEADEM 193

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++    +   P   V + +AT  P  L +T        K   KP        V
Sbjct: 194 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMSKP--------V 238

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 239 RILVKRDELTVEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 298

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 299 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQ 358

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 359 PENYLHRI-GRSGR 371


>gi|46122961|ref|XP_386034.1| hypothetical protein FG05858.1 [Gibberella zeae PH-1]
 gi|91206664|sp|Q4IAA0|FAL1_GIBZE RecName: Full=ATP-dependent RNA helicase FAL1
          Length = 401

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 138/341 (40%), Gaps = 57/341 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q  AI  + +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 49  SPSAVQSRAIVQVCKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 102

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + + ++ +GQ HI+ GT     D
Sbjct: 103 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVG---EDIRKLDYGQ-HIVSGTPGRVAD 158

Query: 389 SIQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L      ++++DE       G ++++    +   P   V++++AT     L +T
Sbjct: 159 MIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMT 218

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +       K    P        V I + R +  +E LK      +K  W    + +  ++
Sbjct: 219 T-------KFMTDP--------VRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDT 263

Query: 499 ----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T
Sbjct: 264 LTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLIST 323

Query: 549 TVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 324 DVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 359


>gi|295095091|emb|CBK84181.1| replication restart DNA helicase PriA [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 731

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 220 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 275

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 276 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 329


>gi|270158224|ref|ZP_06186881.1| primosomal protein N' [Legionella longbeachae D-4968]
 gi|289163519|ref|YP_003453657.1| Primosomal protein N' (replication factor Y) [Legionella
           longbeachae NSW150]
 gi|269990249|gb|EEZ96503.1| primosomal protein N' [Legionella longbeachae D-4968]
 gi|288856692|emb|CBJ10503.1| Primosomal protein N' (replication factor Y) [Legionella
           longbeachae NSW150]
          Length = 753

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 7/115 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +A  +E G Q +++ P IG+  Q    F  ++ Q     + +I
Sbjct: 246 LLQGVTGSGKTEVYLQVIAEVLEQGKQVLVLVPEIGLTPQLVARFTARFKQP----IAVI 301

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              + ++ R+ A +     +  ++IGT A     +    L L++VDE+H   ++Q
Sbjct: 302 HSGLNESERQVAWQLAKENKVKVVIGTRASIFTPMP--ALGLIVVDEEHDPSLKQ 354


>gi|254512229|ref|ZP_05124296.1| putative primosomal protein N' [Rhodobacteraceae bacterium KLH11]
 gi|221535940|gb|EEE38928.1| putative primosomal protein N' [Rhodobacteraceae bacterium KLH11]
          Length = 731

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 52/289 (17%)

Query: 236 GQIALLLMRKQFKKEIGI-PINVEGKIAQKILR------NIPF---SP-------TKSQE 278
           G +A  L  K+  ++ G+ P  V+G + Q  +R      ++P+    P       T+ Q 
Sbjct: 145 GGLAFTL--KELAEQAGVTPSVVKGLVKQGAVREEDSPRDLPYPHLDPDLPGKDLTEDQG 202

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQH 337
           +A++ +       +    +L+G  GSGKT V L A+A  +  G QA+++ P I + A   
Sbjct: 203 AAVERLHAGQRTGDYGTTLLKGVTGSGKTEVYLEAVAETLRMGRQALVLLPEIALTA--- 259

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLI 396
            EF+ +  +                 RR+    +  G A +++G   ALF   + +  L 
Sbjct: 260 -EFLMRVEERFGARPAEWHSGATMTERRRVWRMVGQGDAQLVVGARSALF---LPFRNLG 315

Query: 397 LVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           LV+VDE+H           +  +    L        V+L +ATP   +      G  +  
Sbjct: 316 LVVVDEEHDTSYKQEDGVHYSARDMAVLRSSICGARVILASATPSLESWANAEAGKYERL 375

Query: 447 KITEKPAGRKPIKTVIIP-INRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            +T +          ++P +  ID   E+L       +   WI P + +
Sbjct: 376 DLTAR------FGAAVLPEMKSIDMRAEQL-------QPGTWISPSLRQ 411


>gi|195502160|ref|XP_002098101.1| GE24123 [Drosophila yakuba]
 gi|194184202|gb|EDW97813.1| GE24123 [Drosophila yakuba]
          Length = 719

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 145/354 (40%), Gaps = 47/354 (13%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  ++ +   
Sbjct: 329 TGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNT 388

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G  P+  + + L+R       I+I T     D     S    +   +++DE  R   
Sbjct: 389 CVFGGAPKGGQMRDLQR----GCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLD 444

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGD-IDISKITEKPAGRKPIK 459
             F  Q R  ++Q       L+ +AT  P+    L    LG+ I I+  + + +    I+
Sbjct: 445 MGFEPQIRKIVSQIRPDRQTLMWSAT-WPKEVKQLAEDFLGNYIQINIGSLELSANHNIR 503

Query: 460 TVIIPINRIDEVIERLKVVLSE----GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            V+   +   +  E+LK +LS+     +    I   +E K+       V+        F 
Sbjct: 504 QVVDVCDEFSKE-EKLKTLLSDIYDTSESPGKIIIFVETKRR------VDNLVRFIRSFG 556

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHF 571
                IHG  S  +++ V+  F++G   +L+AT V   G+DV     +I     +N+E +
Sbjct: 557 VRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDY 616

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
               +H++ GR GR     +    +    +K +   + VL+        A E+L
Sbjct: 617 ----IHRI-GRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENL 665


>gi|56756857|gb|AAW26600.1| SJCHGC06283 protein [Schistosoma japonicum]
          Length = 402

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 147/349 (42%), Gaps = 75/349 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    ++++ M        QA++++P
Sbjct: 52  PSAIQQRAIKQII-----KGRDV-IAQAQSGTGKTATLGISILQMLDTQLRETQALVLSP 105

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I      T +      G        + + ++ +GQ H+I GT     D 
Sbjct: 106 TRELASQIQKVILALGDYTNVHCHACYGGTNIG---EDIRKLDYGQ-HVISGTPGRVFDM 161

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++    +   P   V+L++AT     L +TS
Sbjct: 162 IRRRSLRTRAVKLFVLDEADEMLDKGFKEQIYDVYRYLPPGTQVVLLSATMPHEILEMTS 221

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                  K    P              RI  +++R ++ L EG K +++  + EE K   
Sbjct: 222 -------KFMTNPV-------------RI--LVKRDELTL-EGIKQFFVAVEREEWK--- 255

Query: 500 FRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMDS 536
           F ++ + +++L                         +FT  +A +HG M   ++E +M  
Sbjct: 256 FDTLCDLYDTLTVTQSVIFCNTKRKVAWLTEKMLKNNFT--VASMHGDMVQKEREKIMKD 313

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           F+ G  ++LI T +   GIDV   S++I  +  +     +H++ GR GR
Sbjct: 314 FRAGDSRVLITTDLWARGIDVQQVSLVINYDLPNNRELYIHRI-GRSGR 361


>gi|327472726|gb|EGF18153.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK408]
          Length = 447

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 149/358 (41%), Gaps = 44/358 (12%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAV 318
           Q+ LR++ F   T  QE  I  +L       R L + +   GSGKT   L+ +  M    
Sbjct: 13  QEALRDLNFVEATPVQEKLIPVVLS-----GRDL-VGESKTGSGKTHTFLLPIFQMLDEE 66

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               QAVI AP   LA Q Y+  ++       +I V    G   +A +   LE     Q 
Sbjct: 67  AESVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGKLE---SSQP 123

Query: 377 HIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           HI+IGT     D ++   L +      +VDE         L +   AT   +    A  +
Sbjct: 124 HIVIGTPGRIYDLVESGDLAIHKAKTFVVDE-----ADMTLDMGFLATVDKI----AGRL 174

Query: 432 PRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGK---- 483
           P+ L           K+  +P  +K    P+   I     I + IE   ++ ++G+    
Sbjct: 175 PKDLQFLVFSATIPQKL--QPFLKKYLSNPVIEQIKTKTVIADTIENW-LLSTKGRDKNA 231

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           + Y I   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN 
Sbjct: 232 QIYQISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|300714747|ref|YP_003739550.1| Primosomal protein N\' [Erwinia billingiae Eb661]
 gi|299060583|emb|CAX57690.1| Primosomal protein N\' [Erwinia billingiae Eb661]
          Length = 732

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  GGQA+++ P IG+  Q     I ++ +     V+++
Sbjct: 221 LLAGITGSGKTEVYLSVLENVLANGGQALVLVPEIGLTPQT----IARFRERFNAPVDVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +    R     R   G+  I+IGT  ALF     + +L ++I+DE+H    +Q+
Sbjct: 277 HSALNDGERLAVWLRARQGETAIVIGTRSALF---TPFARLGVIIIDEEHDSSYKQQ 330


>gi|261343013|ref|ZP_05970871.1| hypothetical protein ENTCAN_09616 [Enterobacter cancerogenus ATCC
           35316]
 gi|288314765|gb|EFC53703.1| primosomal protein N' [Enterobacter cancerogenus ATCC 35316]
          Length = 731

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     VE++
Sbjct: 220 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPVEVL 275

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 276 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 329


>gi|2370591|emb|CAA73167.1| translation initiation factor eIF4A I [Xenopus laevis]
          Length = 406

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDMKATQALVLAPTRELAQQIQKVVMALGDYMGAGCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G       R  ++++     HI++GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TDVRAEVQKLQSEAPHIVVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK ++   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLSSNAQVVLLSAT-MP----------ADVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|194336584|ref|YP_002018378.1| primosomal protein N' [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309061|gb|ACF43761.1| primosomal protein N' [Pelodictyon phaeoclathratiforme BU-1]
          Length = 812

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 7/140 (5%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-I 330
           +PT SQ+ A++ +   ++Q+     +L G  GSGKTL+ +  +   + AG  A+++ P I
Sbjct: 273 TPTASQQKALEQLTHAVTQEEYKTFLLHGVTGSGKTLIYIELLKKVLAAGKTAIVLVPEI 332

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +  Q    F + +  +    + I+   M    +  A   +  G+  I +G  +     +
Sbjct: 333 ALTPQTAGRFREHFHDD----ITILHSAMSNQEKYDAWHSLRLGKTKIALGARSTIFAPL 388

Query: 391 QYYKLILVIVDEQHRFGVQQ 410
           +   L  +IVDE+H    +Q
Sbjct: 389 E--NLGAIIVDEEHDSAYKQ 406


>gi|85103782|ref|XP_961600.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A]
 gi|74625334|sp|Q9P735|FAL1_NEUCR RecName: Full=ATP-dependent RNA helicase fal-1
 gi|16415977|emb|CAB88547.2| probable translation initiation factor eIF-4A [Neurospora crassa]
 gi|28923147|gb|EAA32364.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A]
          Length = 400

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 138/341 (40%), Gaps = 57/341 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 48  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 101

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + + ++ +GQ HI+ GT     D
Sbjct: 102 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVG---EDIRKLDYGQ-HIVSGTPGRVAD 157

Query: 389 SIQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L      ++++DE       G ++++    +   P   V++++AT     L +T
Sbjct: 158 MIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMT 217

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +       K    P        V I + R +  +E LK      +K  W    + +  ++
Sbjct: 218 T-------KFMTDP--------VRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDT 262

Query: 499 ----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T
Sbjct: 263 LTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLIST 322

Query: 549 TVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 323 DVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 358


>gi|331701287|ref|YP_004398246.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128630|gb|AEB73183.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 453

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 150/361 (41%), Gaps = 55/361 (15%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           ++ + FS PT  QE  +  I+Q          + Q   GSGKT   L+ +   ++     
Sbjct: 17  VKELNFSHPTPVQEKVMPVIMQGRDV------VGQSATGSGKTHAFLLPIFNQLDPAKDE 70

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRKALERIAHGQAHII 379
            QAVI  P   LA Q  +  K+  +++   I      G   +A + K   +I H Q  ++
Sbjct: 71  VQAVITTPSRELAYQIIDAAKQLAKHSPEPISTGAYIGGTDKARQEK---KIQHEQPQLV 127

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQH---RFGVQQRLKLTQKATAPHVLLMT-ATP 430
           +GT     D IQ   L +     +++DE       G    +     +   HV +M  +  
Sbjct: 128 VGTPGRIWDLIQNGGLDVHTASQLVIDEADMTLDMGFLDVVDNIAASFGKHVQMMVFSAT 187

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRK-PIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           IP+ +      ++ + K    P   + P+ T+I P   ID  +     + ++G+    + 
Sbjct: 188 IPQKI------NVFLKKYMVNPFIEEIPVSTIISPT--IDNWL-----ISTKGQDKNQLI 234

Query: 490 PQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            ++    E       +N R  VE      +     +A+IHG +   +++ +M   KN   
Sbjct: 235 YKLLTIGEPYLVLIFANTRKRVEELTEYLKGQGLKVAMIHGGLKPRERKQIMKRVKNLEF 294

Query: 543 KLLIATTVIEVGIDVVDASIII-----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + ++AT +   GID+   S +I      E+ E F    +H++ GR GR     + I LY 
Sbjct: 295 QFVVATDLAARGIDIEGVSDVINDDIPTEDLEFF----IHRV-GRTGRNGMSGTSITLYS 349

Query: 598 P 598
           P
Sbjct: 350 P 350


>gi|327313656|ref|YP_004329093.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
 gi|326944744|gb|AEA20629.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
          Length = 572

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 151/354 (42%), Gaps = 58/354 (16%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL+     N +L + Q   G+GKT   L+ + + +  GG        VIM
Sbjct: 25  TPVQEKCIPEILK----GNDVLGVAQ--TGTGKTAAYLLPVLSKLADGGYPESAINCVIM 78

Query: 328 APIGILAQQHYEFIK--KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +P   LAQQ  + ++   Y  +    V +  GN    + ++ L+ ++ G A ++I T   
Sbjct: 79  SPTRELAQQIDQAMQGFAYYLDGVSCVAVYGGNDGNRYDQE-LKSLSLG-ADVVIATPGR 136

Query: 386 F-----QDSIQYYKLILVIVDEQHRF---GVQQR-LKLTQKATAPHVLLMTATPIPRT-- 434
           F       ++   K+   I+DE  R    G  +  + + +K  A    +M +  +P+   
Sbjct: 137 FISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLPASCQTIMFSATMPKKIE 196

Query: 435 -LVLTSLGD-IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            L  T L + ++I     KPA                E I ++  V  E +K   I    
Sbjct: 197 ELAKTLLKNPVEIKLAVSKPA----------------EKIHQMAYVCYETQKMGIIKDIF 240

Query: 493 EEKKESNFRSVVERFNSLHE--HFTSSIAIIH---GRM-SDIDKE---SVMDSFKNGTCK 543
              K  + + V+    S  +     +S+   H   G M SD+D+E    VM  FK+G   
Sbjct: 241 ---KAGDLKRVIIFSGSKQKVKQIAASLGRKHINCGEMHSDLDQEQRNDVMFKFKSGQID 297

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +L+AT ++  GID+ D +++I  +  H     +H++ GR  R +     I   +
Sbjct: 298 VLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRI-GRTARADRDGKAITFVN 350


>gi|312874364|ref|ZP_07734395.1| putative ComF operon protein 1 [Lactobacillus iners LEAF 2052A-d]
 gi|325911410|ref|ZP_08173822.1| putative ComF operon protein 1 [Lactobacillus iners UPII 143-D]
 gi|311090130|gb|EFQ48543.1| putative ComF operon protein 1 [Lactobacillus iners LEAF 2052A-d]
 gi|325476760|gb|EGC79914.1| putative ComF operon protein 1 [Lactobacillus iners UPII 143-D]
          Length = 429

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 139/346 (40%), Gaps = 53/346 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q     D+L  +  +N    ++    G+GKT +   A+   ++ G    +  P   +
Sbjct: 91  TDRQAKVSADLLHAL--QNNQDHLVHAVTGAGKTEMLFKAVEYFLQQGKYVALATPRLDV 148

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             + Y  + +   NT+I          + H + A +     +  II  TH L    ++YY
Sbjct: 149 VNELYPRMCRAFANTKI---------GKYHGKMAQD--PDNEPFIICTTHQL----LKYY 193

Query: 394 KLI-LVIVDEQHRFGVQQRLKL---TQKATAP--HVLLMTATPIPRTLVLTSLGDIDISK 447
           +   L+I+DE   F       L    + A  P      MTATP    L     G++  S 
Sbjct: 194 QAFDLIIIDEVDAFPYVNNPMLYYGAKNAIKPTGQTFYMTATPSKDMLTKVKNGEMGYSL 253

Query: 448 ITEKPAG------------RKPIK-TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + ++  G            RK I    + P      +I+ L  + + GK      P+I E
Sbjct: 254 LQQRFHGGLLAVPEEYLFWRKYISGESLHPF-----LIKVLNEITNSGKPLLVFVPRIAE 308

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                    +  + ++ +   S + I     SD +++  ++ F+N    +L+ TT++E G
Sbjct: 309 ---------LGLYQTILQKKYSQLVIASVHSSDKNRQQKVEQFRNREISILLTTTILERG 359

Query: 555 IDVVDASIIIIENAEH-FGLAQLHQLRGRVGRG--EEISSCILLYH 597
           +      +I+I   +  +  A L Q+ GRVGR   +++   I  YH
Sbjct: 360 VTFPGVQVIVIAADDAIYTTAGLVQIAGRVGRAATDQVGRVIFCYH 405


>gi|308184805|ref|YP_003928938.1| primosome assembly protein PriA [Helicobacter pylori SJM180]
 gi|308060725|gb|ADO02621.1| primosome assembly protein PriA [Helicobacter pylori SJM180]
          Length = 619

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + A+A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHPA-SLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      + + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKRVFKEN----LGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L++VDE+H F 
Sbjct: 219 LKELGLIVVDEEHDFS 234


>gi|163801279|ref|ZP_02195178.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4]
 gi|159174768|gb|EDP59568.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4]
          Length = 472

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 52/350 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGG-QA 324
           +P+  Q  AI  +L+    K+ M        G+GKT      ++ L++    V A   +A
Sbjct: 23  TPSPIQAQAIPAVLEG---KDVMA---AAQTGTGKTAGFTLPILELLSNGPRVRANHVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHIIIG 381
           +I+ P   LA Q  E +  Y+Q+  +   ++ G +   PQ      ++R+  G A +++ 
Sbjct: 77  LILTPTRELAAQVQESVFTYSQHLPLNSAVVFGGVKINPQ------MQRLRKG-ADVLVA 129

Query: 382 THALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T         Q+++++ +L ++++DE  R      ++  +K       ++   P  R  +
Sbjct: 130 TPGRLMDLYSQNAVKFDQLEVLVLDEADRMLDMGFIRDIRK-------ILDLLPKQRQNL 182

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           L S    D  +   K     P++  + P N     +E+        KKA  +   I   K
Sbjct: 183 LFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPSDAKKKAPMLVKLI---K 239

Query: 497 ESNFRSVV------ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           E ++R V+         N L +         A IHG  S   +   +  FK+G  ++L+A
Sbjct: 240 EGDWRQVLVFTRTKHGANRLAKFLIDEKLPAAAIHGNKSQSARTKALADFKSGAIRVLVA 299

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQ--LHQLRGRVGRGEEISSCILL 595
           T +   GID+     ++  N E   +A+  +H++ GR GR  E+   I L
Sbjct: 300 TDIAARGIDIPQLPQVV--NFELPKVAEDYVHRI-GRTGRAGEMGKAISL 346


>gi|126208588|ref|YP_001053813.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
           L20]
 gi|303250135|ref|ZP_07336337.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307246031|ref|ZP_07528113.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307250372|ref|ZP_07532320.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307252754|ref|ZP_07534645.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307255013|ref|ZP_07536831.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307257169|ref|ZP_07538941.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307259449|ref|ZP_07541174.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307261598|ref|ZP_07543266.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|126097380|gb|ABN74208.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|302651198|gb|EFL81352.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306852966|gb|EFM85189.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306857582|gb|EFM89690.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306859786|gb|EFM91808.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306861886|gb|EFM93862.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306864331|gb|EFM96242.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306866385|gb|EFM98248.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306868721|gb|EFN00530.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 602

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 114/281 (40%), Gaps = 55/281 (19%)

Query: 390 IQYYKLILVIVDEQH---RFGVQQRLKLTQ----KATAPHVLLM----TATPIPRTLVL- 437
           I   K+ L+ VDE H   ++G   R + T     + T P+V LM    TA P  R  +L 
Sbjct: 130 ISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFPNVPLMALTATADPTTRHDILQ 189

Query: 438 --------TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                   T LG  D      +P  R  ++    P+ ++ + I +      +GK     C
Sbjct: 190 HLRLTDPHTYLGSFD------RPNIRYTVQEKFKPVEQLAKFISK-----QQGKSGIVYC 238

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N R  VE           S+   H  MS   +E+V ++F+    ++++AT 
Sbjct: 239 ---------NSRKKVEEITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATI 289

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
              +GI+  +   ++     HF L +     +Q  GR GR +  S  +L Y P  +  ++
Sbjct: 290 AFGMGINKSNVRFVV-----HFDLPRSIESYYQETGRAGRDDLPSEAVLFYDP--ADYAW 342

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            +  +L+  E      + D+KQ K   I    +S   + L+
Sbjct: 343 LQKVLLEEPES----EQRDIKQHKLQAIGAFAESQTCRRLV 379


>gi|172062287|ref|YP_001809938.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171994804|gb|ACB65722.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 465

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 137/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++      QA+++ P   LA Q  + +++  +  + + V
Sbjct: 48  IAQAKTGSGKTAAFSLALLARLDTRRFDVQAMVLCPTRELADQVAQEVRRLARAEENVKV 107

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHI++GT     D +    L L     +++DE  R  
Sbjct: 108 LTLCGGTPMRPQAQSLE---HG-AHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRM- 162

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               L +        V  M  T   +TL+ ++     I+K++++   R P K V +    
Sbjct: 163 ----LDMGFFDDIAKVARMCPT-TRQTLLFSATYPDGIAKLSQQFL-RNP-KEVKLEERH 215

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            +  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 216 DNSKIRQRFYEVAETERLHAVGQLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 275

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 276 -HGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI- 333

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 334 GRTGRADQ 341


>gi|5059027|gb|AAD38874.1|AF110007_1 p68 RNA helicase [Molgula oculata]
 gi|5059032|gb|AAD38877.1|AF110009_1 p68 RNA helicase [Molgula oculata]
          Length = 618

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/339 (21%), Positives = 138/339 (40%), Gaps = 45/339 (13%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     + A        G   +++ P   LAQQ  +   ++  ++ I   
Sbjct: 193 TGSGKTLAFILPAIVHINAQPYLDPGDGPIVLVLCPTRELAQQVQQVAAEFGSSSHIKNT 252

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G   +  + + LER       I+I T     D ++  K  L     +++DE  R   
Sbjct: 253 CVYGGASKGPQLRDLER----GCEIVIATPGRLIDFLEQKKTNLRRCTYLVLDEADRMLD 308

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKI--TEKPAGRKPI 458
             F  Q R  ++Q       L+ +AT  P+    L    LGD    ++  T   A    +
Sbjct: 309 MGFEPQIRKIISQIRPDRQTLMWSAT-WPKEVSKLAADFLGDFVHVQVGSTGLSANHNIL 367

Query: 459 KTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           + V +  P+ + ++++  ++ ++ E            E K   F     R + L      
Sbjct: 368 QIVDVCQPMEKDEKLMRLMEEIMGE-----------SENKTIIFTETKRRCDELTRTMRR 416

Query: 517 S---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  IHG  S  +++ V++ F++G   +L+AT V   G+DV D   +I  +      
Sbjct: 417 DGWPAMCIHGDKSQPERDWVLNEFRSGRSPILVATDVASRGLDVSDVKFVINYDFPSQCE 476

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             +H++ GR  R E+  +    +    +K +   +++L+
Sbjct: 477 DYVHRI-GRTARAEQKGTAYTFFTYDNAKQAKDLIAILQ 514


>gi|241948951|ref|XP_002417198.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223640536|emb|CAX44790.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 399

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 135/324 (41%), Gaps = 67/324 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I M   ++      QA+I++P   LA Q    +K       I   
Sbjct: 67  IAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTH 126

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
              G        K L++   GQ  I+ GT     D     ++Q   + ++I+DE      
Sbjct: 127 ACIGGKNVGDDVKKLQQ---GQ-QIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFT 182

Query: 407 -GVQQRLKLTQKATAPHVLLMT-ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            G ++++    K   P V ++  +  +PR ++  +      SK T  P            
Sbjct: 183 KGFKEQIYEIYKHLPPSVQVVVVSATLPREVLEMT------SKFTTDP------------ 224

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-------------- 510
              +  +++R ++ LS  K+ Y  C    E+++  F ++ + +++L              
Sbjct: 225 ---VKILVKRDEISLSGIKQFYVQC----EREDWKFDTLCDLYDNLTITQAVIFCNTKLK 277

Query: 511 ---------HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
                     ++FT  +  +HG M   +++S+M+ F+ G  ++LI+T V   GIDV   S
Sbjct: 278 VNWLADQMKKQNFT--VVAMHGDMKQDERDSIMNEFRRGNSRVLISTDVWARGIDVQQVS 335

Query: 562 IIIIENAEHFGLAQLHQLRGRVGR 585
           ++I  +        +H++ GR GR
Sbjct: 336 LVINYDLPTDKENYIHRI-GRSGR 358


>gi|255578793|ref|XP_002530253.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223530219|gb|EEF32123.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 1173

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 145/363 (39%), Gaps = 66/363 (18%)

Query: 302 VGSGKTLVALIAM------AAAVEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++ M         VEAG   +  IMAP   L QQ +  IKK+ +   I   
Sbjct: 573 TGSGKTLAFVLPMLRHIKDQPLVEAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCV 632

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G    A +   L+R       I++ T     D +           ++  +++DE  R
Sbjct: 633 PVYGGSGVAQQISELKR----GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 688

Query: 406 F---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKP-----AGR 455
               G + ++    +   P    +L +AT  PR + + +       K+  KP      GR
Sbjct: 689 MFDMGFEPQITRIVQNIRPDRQTVLFSAT-FPRQVEILA------RKVLNKPVEIQVGGR 741

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYW-------ICPQIEEKKESNFRSVVERFN 508
             +   I  +  ++   E  + +        W       I  Q ++K ++ FR +++   
Sbjct: 742 SVVNKDITQL--VEVRPESERFLRLLELLGEWNEKGKILIFVQSQDKCDALFRDLLK--- 796

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
               H    +++ HG     D+ES +  FK+  C LLIAT++   G+DV +  +++  + 
Sbjct: 797 ----HGYPCLSL-HGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELDLVVNFDV 851

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILL-------YHPPLSKNSYTRLSV----LKNTEDG 617
            +     +H++ GR GR       I         Y P L K       V    LK   DG
Sbjct: 852 PNHYEDYVHRV-GRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQVVPEDLKALADG 910

Query: 618 FLI 620
           F++
Sbjct: 911 FMV 913


>gi|254372659|ref|ZP_04988148.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570386|gb|EDN36040.1| ATP-dependent RNA helicase [Francisella novicida GA99-3549]
          Length = 569

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 47/334 (14%)

Query: 299 QGDVGSGKTLVALIAM-----AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           Q   G+GKT    + +      A+ +   Q +++AP   LA Q  E  + + +N   + V
Sbjct: 50  QAQTGTGKTAAFALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDV 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQH 404
             I G      + +AL++       +++GT     D I+           L+L   DE  
Sbjct: 110 ACIYGGQEYGSQIRALKQ----GVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEML 165

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           R G    +K  L+  +     LL +AT IP           DI+ I E+   R P K  +
Sbjct: 166 RMGFIDDVKFVLSHVSEQCQRLLFSAT-IP----------TDIADIIEEYL-RNPCKIQV 213

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--------RSVVERFNSLHEHF 514
               +    + + K ++ +G +      ++ E +E++          S +E  ++L +  
Sbjct: 214 KAKTKTANTVTQ-KFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTSTIEVTDNL-KAL 271

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A I+G M    +E ++D F++    +L+AT V+  GID+   S +I  +  +    
Sbjct: 272 GYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPNDTDT 331

Query: 575 QLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTR 607
            +H++ GR GR G E +S  L+   PL +  + R
Sbjct: 332 YVHRI-GRTGRAGREGTSISLV---PLKEMRFLR 361


>gi|73621050|sp|Q4R8K5|IF4A1_MACFA RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|67968411|dbj|BAE00567.1| unnamed protein product [Macaca fascicularis]
          Length = 406

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 130/301 (43%), Gaps = 61/301 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+ ++ 
Sbjct: 190 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIRILVK 237

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------RFN 508
                    E L +   EG + ++I  + EE K      + E               + +
Sbjct: 238 K--------EELTL---EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVD 286

Query: 509 SLHE-----HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            L E      FT+S   +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++
Sbjct: 287 WLTEKMHARDFTASA--MHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 344

Query: 564 I 564
           I
Sbjct: 345 I 345


>gi|47221754|emb|CAG08808.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1046

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 128/315 (40%), Gaps = 49/315 (15%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+  L+ M   +          G  AVIM P   LA Q  +  KK+++   + V 
Sbjct: 389 TGSGKTIAFLLPMFRHIMDQRPLEESEGPIAVIMTPTRELALQITKECKKFSKPLGLRVV 448

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G    + +   L+R     A II+ T     D +           ++  V++DE  R
Sbjct: 449 CVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVLDEADR 504

Query: 406 F---GVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
               G + Q +++          +M +   PR +   +   ++           KPI+  
Sbjct: 505 MFDMGFEPQVMRIVDSVRPDRQTVMFSATFPRAMEALARRILN-----------KPIEVQ 553

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----- 516
           +   + +   +E+  +V+ E  K   +   +   +E   R  V  F    EH        
Sbjct: 554 VGGRSVVCSDVEQHVLVIEEDNKFLKLLELLGHYQE---RGSVIIFVDKQEHADGLLKDL 610

Query: 517 -----SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                    +HG +   D++S+++ FK+G C+L++AT+V   G+DV    +++  N  + 
Sbjct: 611 MKASYPCMSLHGGIDQYDRDSIINDFKSGACRLMVATSVAARGLDVKQLILVVNYNCPNH 670

Query: 572 GLAQLHQLRGRVGRG 586
               +H+  GR GR 
Sbjct: 671 YEDYVHRA-GRTGRA 684


>gi|312958380|ref|ZP_07772901.1| ATP-dependent DNA helicase [Pseudomonas fluorescens WH6]
 gi|311287444|gb|EFQ66004.1| ATP-dependent DNA helicase [Pseudomonas fluorescens WH6]
          Length = 645

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 160/383 (41%), Gaps = 55/383 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            GSGK+L   ++   AV      ++++P+  L Q    F++++         I  G++  
Sbjct: 37  TGSGKSLCYQLS---AVLLPHLTLVVSPLLALMQDQLGFLQRHG--------ISAGSIDS 85

Query: 362 AHRRKA----LERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQ 409
           A  R+A    + R   G+  I++ +     +  F++ +Q  ++ L++VDE H    +G  
Sbjct: 86  AQSREAANDVMARARSGELKILMISVERLKNERFRNFLQSVRISLLVVDEAHCISEWGHN 145

Query: 410 QR---LKL---TQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGRKPIKTVI 462
            R   LKL    ++   P  LL+TAT  P+ +  + +   I    +      R  +  ++
Sbjct: 146 FRPDYLKLPDYQRQFKIPQALLLTATATPKVIADMQAKFAIAPDDVVTTGFYRPNLNLLV 205

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
            P++  D+   RL   +SE      I     +K        + R     E +       H
Sbjct: 206 EPVSGADKR-RRLVQWMSERANQPSIVYVTLQKTAEQIAEHLNRNGIQAEAY-------H 257

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQ 578
             +    +E +   F  G    ++AT    +GID  D     I N  HF L +      Q
Sbjct: 258 AGLPHDKREGIQQRFMGGRSNCIVATIAFGMGIDKSD-----IRNVVHFDLPKSIENYSQ 312

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
             GR GR  + S C++L     +++S   L+VL+N   G    +E ++   E ++   + 
Sbjct: 313 EIGRAGRDGQPSDCLVL----ANRDS---LNVLENFIYGDTPEQEGIRHVLE-DLQAARS 364

Query: 639 SGMPKFLIAQPELHDSLLEIARK 661
            G  +F++     H ++ E+  K
Sbjct: 365 EGQWEFVLRSLSDHSNIRELPLK 387


>gi|298242251|ref|ZP_06966058.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297555305|gb|EFH89169.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 961

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 128/337 (37%), Gaps = 55/337 (16%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +AQK       S  + Q  A     +   + N+ +++L G+  SGKT  AL  + AA   
Sbjct: 437 LAQKAREEAEKSALREQLIATFPDWRHEQRANQRIKVLLGEANSGKTRAALERLIAA--- 493

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            G    +AP+ +LA + Y+ + +      I   ++TG           E I    A I  
Sbjct: 494 -GSGWYLAPLRLLAYEIYDALNRRG----IACNLLTGE----------EEIVVRGAQITA 538

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQR----LKLTQKATAPHVLLMTATPIP-RTL 435
            T  +F           V++DE H  G   R     +   +A A  +L++   P+  R L
Sbjct: 539 ATIEMFDARSGGG---CVVIDEAHMLGDPDRGWAWTRALMEARAEEMLVLG--PLAARPL 593

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           V   L  +      E+ +   P++    P    D     + V  S G             
Sbjct: 594 VERLLYAVGQPFTFEQSSRLVPLRMATTPYKLRDLPARTVVVAFSRG------------- 640

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                  +V    +  E     ++I++G +    +    D F  G  ++ +AT  I +G+
Sbjct: 641 -------MVLALKADLEQMGRKVSIVYGALPPEVRRRQADRFACGETEICVATDAIGMGL 693

Query: 556 DVVDASIIIIENAEHFG-------LAQLHQLRGRVGR 585
           ++   ++   E  ++ G         ++HQ+ GR GR
Sbjct: 694 NLPADAVCFYETKKYDGKRVRPLTAMEVHQIGGRAGR 730


>gi|257388469|ref|YP_003178242.1| DEAD/H associated domain protein [Halomicrobium mukohataei DSM
           12286]
 gi|257170776|gb|ACV48535.1| DEAD/H associated domain protein [Halomicrobium mukohataei DSM
           12286]
          Length = 939

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 140/349 (40%), Gaps = 47/349 (13%)

Query: 302 VGSGKTLVALI----AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            G+GKT  A++    A+A     G  A+ + P+  L +   E +  +     + +++  G
Sbjct: 51  TGTGKTETAMLPVFDALADEDRFGIGALYVTPLRALNRDMRERLDWWGDALDLEIDVRHG 110

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-------VIVDEQHRFGVQQ 410
           +     R++     A     +++ T    Q  +   KL         V+VDE H     +
Sbjct: 111 DTTDYQRQQQ----ADDPPDVLVTTPETLQAMLTGSKLRTALEDVAHVVVDEVHELAAAK 166

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI----------SKITEKPAGRKPIKT 460
           R    Q       L   + P+ R  +  ++GD +            +I E   G +   +
Sbjct: 167 RG--AQLTVGLERLREVSGPVQRIGLSATVGDPEAVGRFLTGDRGCRIVEVDVGSRLDVS 224

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KKES-----NFRSVVERFNSLHE 512
           V+ P   + +  ERL   L    +      +I+E     +S     N R   E   S  +
Sbjct: 225 VVRPT--VTDADERLASELVTDPEVASHVRRIDELIAAHDSVLVFVNTRQTAEALGSRFK 282

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV--VDASIIIIENAEH 570
              +++ + HG ++   +  V D FK G    L+ T+ +E+GIDV  VD    +++    
Sbjct: 283 ELGTNLGVHHGSLAKETRIDVEDRFKEGDLDALLCTSSMELGIDVGHVDH---VVQYGSP 339

Query: 571 FGLAQLHQLRGRVGRGEEI--SSCILLYHPPLSKNSYTRLSVLKNTEDG 617
             +A+L Q  GR G   ++  S  ++  HP    ++   L++ +   DG
Sbjct: 340 RQVARLLQRVGRAGHRRDLLSSGTVVTTHP---DDTLEALAITRQALDG 385


>gi|153830439|ref|ZP_01983106.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           623-39]
 gi|229514213|ref|ZP_04403674.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|254285788|ref|ZP_04960751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           AM-19226]
 gi|148874080|gb|EDL72215.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           623-39]
 gi|150424285|gb|EDN16223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           AM-19226]
 gi|229348193|gb|EEO13151.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|327485774|gb|AEA80180.1| ATP-dependent RNA helicase VCA0768 [Vibrio cholerae LMA3894-4]
          Length = 422

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 132/337 (39%), Gaps = 41/337 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQG-DVGSGKTLV-------ALIAMAAAVEAGGQ 323
           +PT  Q+ AI  +LQ          +L G   G+GKT           I      EA  +
Sbjct: 28  NPTPIQQQAIPHVLQGKD-------VLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSK 80

Query: 324 ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I
Sbjct: 81  EIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHL----RGGVDILI 136

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D      L L     +++DE  R      +   Q+      +L   +P+ +TL
Sbjct: 137 ATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR------VLRRLSPLRQTL 190

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             ++  D  I  +  +   R PI+  + P N   E ++++   + + +K   +   I  K
Sbjct: 191 FFSATFDSKIKAVAYRIM-RDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSK 249

Query: 496 KESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                  F    +  ++L E           I+G  S   ++  +D FK G  + LIAT 
Sbjct: 250 NWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATD 309

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           V   G+D+     ++  +        +H++ GR GR 
Sbjct: 310 VAARGLDIAQLEQVVNYDMPFKAEDYVHRI-GRTGRA 345


>gi|301755880|ref|XP_002913778.1| PREDICTED: nucleolar RNA helicase 2-like [Ailuropoda melanoleuca]
          Length = 794

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 137/350 (39%), Gaps = 83/350 (23%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++            Q +++AP   LA Q        T+ 
Sbjct: 229 IAQARTGTGKTFSFAIPLIEKLQGEMQDRKRGRAPQVLVLAPTRELANQVSRDFSDITR- 287

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +   +ER+ +G   I++GT    +D +Q  KL L     V++DE
Sbjct: 288 -KLAVACFYGGTPYGGQ---IERMRNG-IDILVGTPGRIKDHLQNGKLDLTKLKHVVLDE 342

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTAT------PIPRTLVLTSLGDIDIS 446
             +         V++ L +  K  +   P  LL +AT       + +  + ++   +D+ 
Sbjct: 343 VDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDL- 401

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
                  G+K  KT I         +E L +      K +W       ++ +    V+  
Sbjct: 402 ------IGKKTQKTAI--------TVEHLAI------KCHWT------QRAAVIGDVIRV 435

Query: 507 FNSLH-------------EHFTSSIAI------IHGRMSDIDKESVMDSFKNGTCKLLIA 547
           ++  H             +  + +++I      +HG +    +E  +  F+NG   +L+A
Sbjct: 436 YSGFHGRTIIFCETKKEAQELSQNVSIKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVA 495

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           T V   G+D+ +  +++  +      + +H+  GR GR      CI  Y 
Sbjct: 496 TNVAARGLDIPEVDLVVQSSPPKDVESYIHR-SGRTGRAGRTGICICFYQ 544


>gi|255691833|ref|ZP_05415508.1| ATP-dependent RNA helicase [Bacteroides finegoldii DSM 17565]
 gi|260622556|gb|EEX45427.1| ATP-dependent RNA helicase [Bacteroides finegoldii DSM 17565]
          Length = 459

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 126/328 (38%), Gaps = 53/328 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL    GSGKTL  L+ +   ++ G    Q +I+ P   LA Q     K     T     
Sbjct: 53  ILLSPTGSGKTLAYLLPLLLTLKPGNDNVQVLILVPSRELALQIDSVFK--AMGTAWKTC 110

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHR 405
              G  P A  +K+   I+     IIIGT     D +            LI+   D+   
Sbjct: 111 CCYGGHPIAEEKKS---ISGNHPAIIIGTPGRITDHLSKGNFNPETIETLIIDEFDKSLE 167

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATP---IP------RTLVLTSLGDIDISKITEKPAG 454
           FG    +   +TQ       +L++AT    IP      RT+ L  L D       E+ + 
Sbjct: 168 FGFHDEMAEIITQLPGLKKRMLLSATDAEEIPEFTGLNRTVRLNFLPD----AADEQESR 223

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            K +K      +++D +   L  + S     +            N R  V+R   L    
Sbjct: 224 LKLMKVFSPAKDKVDTLYNLLCTLGSSSSIVF-----------CNHRDAVDRVQKLLADK 272

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL- 573
                  HG M   D+E  +  F+NG+C +LI+T +   G+D+ +     IE+  H+ L 
Sbjct: 273 KLFAERFHGGMEQPDRERALYKFRNGSCHVLISTDLAARGLDIPE-----IEHIIHYHLP 327

Query: 574 ----AQLHQLRGRVGRGEEISSCILLYH 597
               A  H+  GR  R +   +  L+ H
Sbjct: 328 VNEEAFTHR-NGRTARWDATGTSYLILH 354


>gi|223043663|ref|ZP_03613707.1| ATP-dependent DNA helicase [Staphylococcus capitis SK14]
 gi|222442941|gb|EEE49042.1| ATP-dependent DNA helicase [Staphylococcus capitis SK14]
          Length = 1075

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 17/154 (11%)

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA--- 574
           +AI HG++S  +K     +FK G   +++AT    +GID+ D     IE   H+ ++   
Sbjct: 564 VAIYHGQLSTDNKNINFRNFKTGEQPIILATKAFGMGIDIPD-----IEEVYHYAISGNV 618

Query: 575 -QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
               Q  GRV R +E     L Y P    N + +L  L + + G L++  D       +I
Sbjct: 619 LDYIQEIGRVARKKERGKACLDYIPNKDFNDFKKLKALSSIKKGQLLSIMD-------KI 671

Query: 634 LGI-KQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
             I K+SG  ++L    E  + +     +D   I
Sbjct: 672 KSIYKESGNKRYLTINIESFNYIFNNDFEDTDDI 705


>gi|207856830|ref|YP_002243481.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206708633|emb|CAR32955.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 457

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 137/326 (42%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI------ 399
              + G  P   +R +L+       HII+ T     D +Q   +      ILV+      
Sbjct: 105 T--LCGGQPFGAQRDSLQH----APHIIVATPGRLLDHLQKETVSLDALHILVMDEADRM 158

Query: 400 --------VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                   +DE  RF    R  L   AT P  +   +  + +  +      I+I  +   
Sbjct: 159 LDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPI-----RIEIDTVDAL 213

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           PA  +             E I  L+ +LS+ + A  +   +    + + ++V +  N++ 
Sbjct: 214 PAIEQQFFE-----TSAHEKISLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALNAVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 Q---SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELVVNYELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFC 345


>gi|221061545|ref|XP_002262342.1| ATP-dependent RNA helicase [Plasmodium knowlesi strain H]
 gi|193811492|emb|CAQ42220.1| ATP-dependent RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 713

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 161/384 (41%), Gaps = 57/384 (14%)

Query: 234 LAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD----M 288
           L G + +L  R +Q +KE G     EG I +K  +       +S + A +D +Q      
Sbjct: 328 LPGLMHILKQRERQVEKENGWEQGQEG-IGEKTTQEWT---NESMQGATQDAVQGDTEGA 383

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           +Q++    + QGD    +T+  LI +              P   L  Q  + IK + +  
Sbjct: 384 TQRSGDRYVHQGD----RTVYGLILL--------------PTRELCMQVVDEIKIFEKEL 425

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQ 403
            I    + G +P+  +   L++     A I++ T     D      I   + I V++DE 
Sbjct: 426 DIRSVAVYGGVPKYTQINNLKK----GADIVVATPGRLLDLLENGVIHLLRCIYVVIDEA 481

Query: 404 HRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVL----TSLGDIDISKITEKPAG 454
            R    G +++LK  +TQ      +L  TAT   +   L    +SL  + I     +   
Sbjct: 482 DRLLDMGFEKQLKKIMTQVNKNKQLLFFTATWPEQVRQLAYDFSSLDPVKIQVGKSELTA 541

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLS--EGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            K I+  +I  + ID   + L  +    EG K    C           R+       L  
Sbjct: 542 NKNIEQSVIVSSSIDLKKKLLDWLKQNYEGNKILIFC--------DTKRNCDNLCKELRY 593

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           H  +++AI HG     +++ +++++++  C +L+AT V   G+D+ + SI++  +  +  
Sbjct: 594 HQYNALAI-HGDKEQRERDRILNNYRSDRCNILVATDVASRGLDIKNISIVVNYDLPNTI 652

Query: 573 LAQLHQLRGRVGRGEEISSCILLY 596
              +H++ GR GR  +    +L +
Sbjct: 653 EDYIHRI-GRTGRAGKKGKAVLFF 675


>gi|152992584|ref|YP_001358305.1| DEAD-box ATP dependent DNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424445|dbj|BAF71948.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp.
           NBC37-1]
          Length = 492

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 148/355 (41%), Gaps = 65/355 (18%)

Query: 273 PTKSQESAIKDILQ--DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMA 328
           P+  Q+ AI  +L+  DM        I Q   G+GKT    + + + ++A G  + +++ 
Sbjct: 24  PSPVQKDAIPLVLEGHDM--------IAQAQTGTGKTAAFGLPIMSMMKADGSVEGLVIV 75

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + + ++ + + +    + G        K +ERI   QA I++ T    QD
Sbjct: 76  PTRELAMQVSDELFRFGKLSGLKTATVYGGTAYG---KQIERIK--QASIVVATPGRLQD 130

Query: 389 SIQYYKLIL----VIVDEQHR---------------FGVQQRLKLTQKATAPHVLLMTAT 429
            +   K+ L    V++DE                  F  ++R  L   AT P+ +   A 
Sbjct: 131 LLMSGKIKLNPHFVVLDEADEMLDMGFLDEIKNIFTFLPKERQTLMFSATMPNGIRKLAE 190

Query: 430 PI---PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
            I   P+T+ +T     + SKIT+           ++     D+ + RL +     +K  
Sbjct: 191 QILNNPKTVSITKSESTN-SKITQY--------YYVVQERERDDALVRL-IDYKNPEKCI 240

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCK 543
             C     KKE      V+R   L  H T+    ++ +HG M    +E  + +FK G   
Sbjct: 241 IFCRM---KKE------VDR---LVAHLTAQGFKVSGLHGDMEQKQREVTIRAFKQGGID 288

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + +AT V   G+DV D + +   +      + +H++ GR GR  +    I L  P
Sbjct: 289 IFVATDVAARGLDVNDVTHVFNYHIPFDSESYVHRI-GRTGRAGKTGEAITLVSP 342


>gi|85374570|ref|YP_458632.1| primosome assembly protein PriA [Erythrobacter litoralis HTCC2594]
 gi|84787653|gb|ABC63835.1| primosomal protein N [Erythrobacter litoralis HTCC2594]
          Length = 721

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L G  GSGKT      +AAA+    Q +++ P   L +    F++++         +  
Sbjct: 213 LLDGVTGSGKTETYFEPVAAALRMDRQVLVLLPEIALTEA---FLRRFADRFGAAPIVWH 269

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            ++    RR+A   I+ G+A +++G   ALF   + Y  L L++VDE H    +Q
Sbjct: 270 SSLKSTERRRAWRAISTGEAQVVVGARSALF---LPYDNLGLIVVDEAHEVSFKQ 321


>gi|326511343|dbj|BAJ87685.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 410

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 131/309 (42%), Gaps = 36/309 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  QE AI  I+           I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 60  PSAIQERAIMPIITGRDV------IAQAQSGTGKTATFTISILQRIDMALREPQALILAP 113

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA--HIIIGTHALFQ 387
              LAQQ  + +        +      G           E IA  QA  H+I+GT     
Sbjct: 114 TRELAQQIQKVVIALGDYMNVDCHACVGGT------SIKEDIAKLQAGPHVIVGTPGRVF 167

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV-----LLMTATPIPRTLVLTSLGD 442
           D I       +  D    F + +  ++  K  A ++     LL   T +   ++L++   
Sbjct: 168 DMINRR---FLKTDHIKVFALDEADEMLSKGFAENMYDIFQLLPAETQV---VLLSATMP 221

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESN-- 499
            D+ ++T+K   R PI+ ++       E I +  + +  E  K   +C   E    +   
Sbjct: 222 NDVLEVTKKFM-RDPIRILVKKEELTLEGIRQFYIAVEKEDWKLDTLCDLYETVTITQAV 280

Query: 500 -FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F S   + + L E   S   +++ +HG M    +E VM  F++G+ ++LIAT ++  GI
Sbjct: 281 IFCSTRRKVDWLTEKLHSREFTVSAMHGDMEMQAREVVMKEFRSGSSRVLIATDLLARGI 340

Query: 556 DVVDASIII 564
           DV   S++I
Sbjct: 341 DVQQVSLVI 349


>gi|325188272|emb|CCA22812.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 470

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 141/340 (41%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ A+K IL           I Q   G+GKT    +++   +       QA+I+AP
Sbjct: 120 PSAIQQRAVKPILLGHDC------IAQAQSGTGKTATFTVSILQKININLKETQALILAP 173

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ  + I        I V    G       R  +  +  G  HI++GT     D 
Sbjct: 174 TRELAQQIVKVIAAIGDYMSINVHACVGGTAV---RDDIHTLQQG-VHIVVGTPGRVGDM 229

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTS 439
           I    L        +L   DE    G Q ++    +    +  V L +AT +P+      
Sbjct: 230 INQGALRTEAVKMFVLDEADEMLSRGFQDQIYDVFRFLPESVQVALFSAT-MPQ------ 282

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
               ++ ++T+K   R PI+   I + R +  +E +K      ++  W    + +  E+ 
Sbjct: 283 ----EVLEVTQKFM-RDPIR---IMVKRDELTLEGIKQFFVAIEREEWKFDTLCDLYETL 334

Query: 499 ---------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N R  V+      +    +++ +HG M    ++ +M  F++G+ ++LI T 
Sbjct: 335 TITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVLITTD 394

Query: 550 VIEVGIDVVDASIIIIE----NAEHFGLAQLHQLRGRVGR 585
           ++  GIDV   S+++      N E++    +H++ GR GR
Sbjct: 395 LLARGIDVQQVSLVVNYDLPLNRENY----IHRI-GRSGR 429


>gi|325091997|gb|EGC45307.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus H88]
          Length = 544

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/346 (20%), Positives = 147/346 (42%), Gaps = 50/346 (14%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +++AP   LA Q    I K+ ++++I  
Sbjct: 171 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRN 230

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G +P+  + + L R       + I T     D ++  K  L     +++DE  R  
Sbjct: 231 TCVYGGVPKGPQIRDLTR----GVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRML 286

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
              F  Q R  ++Q           AT P  +   A       +  ++G +D+S   +IT
Sbjct: 287 DMGFEPQIRKIVSQIRPDRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRIT 346

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +       I  ++    + D + + L  ++ + K +  +     ++   +    + RF  
Sbjct: 347 Q-------IVEIVSEFEKRDRMAKHLDRIMEDNKHSKVLIFTGTKRVADD----ITRF-- 393

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D + ++  +  
Sbjct: 394 LRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYP 452

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +     +H++ GR GR     + I L+    +K +   +++L  ++
Sbjct: 453 NNSEDYVHRI-GRTGRAGAKGTAITLFTTDNAKQARDLVAILSESK 497


>gi|322517386|ref|ZP_08070260.1| superfamily II DNA/RNA helicase ComFA [Streptococcus vestibularis
           ATCC 49124]
 gi|322123984|gb|EFX95540.1| superfamily II DNA/RNA helicase ComFA [Streptococcus vestibularis
           ATCC 49124]
          Length = 439

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 142/336 (42%), Gaps = 50/336 (14%)

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQN 347
           + KN+   ++    G+GKT +    +A  +E   +  I +P + +  +      K +T +
Sbjct: 109 TYKNKKHSLVHAVTGAGKTEMIYKIVAYVLENKNRVAIASPRVDVCRELFLRMQKDFTCS 168

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             ++               A      G   +I  TH L +    Y+   L+IVDE   F 
Sbjct: 169 ISLL--------------HADSEPYDGSPLVIATTHQLLKF---YHSFDLIIVDEVDAFP 211

Query: 408 VQQRLKLTQ-----KATAPHVLLMTATPIPRTLVL---TSLGDIDISKITEKPAGRKPIK 459
               + L       K      + +TAT    TL L     LG ++   +  +  G     
Sbjct: 212 FVGNVMLNHAVKQAKTETGRYIYLTATS---TLALEEQVRLGALEKHHLARRFHG----N 264

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR--------SVVERFN-SL 510
            +++P         RL+  L+ GK    +  QI+++++SNF         +V E+F+ +L
Sbjct: 265 PLVLPRFFWQG---RLQKSLTNGKLPSLLIHQIKKQRKSNFPLLIFFPNIAVGEKFSITL 321

Query: 511 HEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            ++  T +IA +  +    ++ ++++ F+     +L+ TT++E G+      + +     
Sbjct: 322 KKYLPTENIAFVSSKSE--ERSTIVEKFRKKELSILVTTTILERGVTFPQVDVFVCMANH 379

Query: 570 H-FGLAQLHQLRGRVGRG-EEISSCILLYHPPLSKN 603
           H +  + L Q+ GRVGR  E  +  +  +H  LSK+
Sbjct: 380 HLYTSSSLIQIGGRVGRSPERPTGKLYFFHEGLSKS 415


>gi|271502446|ref|YP_003335472.1| primosomal protein N' [Dickeya dadantii Ech586]
 gi|270346001|gb|ACZ78766.1| primosomal protein N' [Dickeya dadantii Ech586]
          Length = 740

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L A+   +  G QA+++ P IG+  Q     I ++       VE +
Sbjct: 229 LLAGITGSGKTEVYLSALENILAQGKQALVLVPEIGLTPQT----IARFRDRFHAPVEAL 284

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   G++ I+IGT  ALF     + +L L+I+DE+H    +Q+
Sbjct: 285 HSGLNDSERLSVWLRAKQGESAIVIGTRSALF---TPFARLGLIIIDEEHDGSYKQQ 338


>gi|257455420|ref|ZP_05620655.1| ATP-dependent RNA helicase RhlB [Enhydrobacter aerosaccus SK60]
 gi|257447382|gb|EEV22390.1| ATP-dependent RNA helicase RhlB [Enhydrobacter aerosaccus SK60]
          Length = 391

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 129/318 (40%), Gaps = 41/318 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV-------EAGG-------QAVIMAPIGILAQQHYEFIK 342
           I Q   G+GKT   L+ +   +       E  G       +A+++AP   LAQQ Y+   
Sbjct: 44  IGQAQTGTGKTATFLLTIINELLNNPLNPEIDGDRFLGETRALVLAPTRELAQQIYQDCL 103

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLIL 397
           + T+ T++    + G      + K L +       III T        FQ  +   +L +
Sbjct: 104 ELTKFTELHTVCLLGGTDYETQSKQLHQKF---VDIIIATPGRLIDFCFQHHVYLDRLEI 160

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPH----VLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +++DE  R        +      P     + +M A    +TL+ ++  + D+  +  +  
Sbjct: 161 LVLDEADR--------MLDMGFIPDIKRLIRMMPANTHRQTLLFSATFNQDVMNLAYRWL 212

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVERFNSL 510
             +PI   I P  +  + IE+L   L E  K      I  +I  KK   F +  ++   L
Sbjct: 213 -YQPIFVEIAPEQKTSQTIEQLFFTLMESDKLAALQQIIEKISPKKMIVFANRKDQVKRL 271

Query: 511 HEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           ++       + I+ G +    +E  +  F+ G   +L+AT V   GI V D + ++    
Sbjct: 272 YDKLNRQYKVVILSGDVIQAKREKYLAQFRQGDANILVATDVAGRGIHVDDVACVVNYTL 331

Query: 569 EHFGLAQLHQLRGRVGRG 586
                  +H++ GR GR 
Sbjct: 332 PDSPDDYVHRI-GRTGRA 348


>gi|255326780|ref|ZP_05367856.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
 gi|255295997|gb|EET75338.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
          Length = 744

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 136/325 (41%), Gaps = 47/325 (14%)

Query: 302 VGSGKT----LVALIAMAAAVEAGG-----QAVIMAPIGILAQQHYEFIKKY-TQNTQII 351
            G+GKT    L AL  MA   +  G     Q +++AP   LA Q  E    Y T      
Sbjct: 112 TGTGKTAAFALPALSRMAELADVNGISRDTQVLVLAPTRELALQVAEAFSSYATHMEDFT 171

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD----------SIQYYKLILVIVD 401
           V  I G  P   +   L R     A +++GT     D          ++QY  L+L   D
Sbjct: 172 VLPIYGGSPYGPQLAGLRR----GAQVVVGTPGRVIDHLEKGSLDLSNLQY--LVLDEAD 225

Query: 402 EQHRFGVQQRLKLTQKAT--APHVLLMTATPIPRTL------VLTSLGDIDISKITEKPA 453
           E  R G  + ++   + T  +  V L +AT +P ++       L    +I +   T   A
Sbjct: 226 EMLRMGFAEDVEKILEGTPDSKQVALFSAT-MPNSIRKIAQQYLNDPTEIRVKAKTTTSA 284

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
                   ++  +++D +   L+V   +G     I   +  KKE+    V ++  +    
Sbjct: 285 NISQRYMQVMHSHKLDAMTRVLEVENYDG-----IIVFVRTKKETE--EVADKLKA--RG 335

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F +  A I+G +    +E  +D+ ++G   +L+AT V   G+DV   S+++  +  H   
Sbjct: 336 FAA--AAINGDIPQQLRERTVDALRDGRIDILVATDVAARGLDVERISLVVNYDIPHDTE 393

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
           + +H++ GR GR     + IL   P
Sbjct: 394 SYVHRI-GRTGRAGREGAAILFVTP 417


>gi|322417740|ref|YP_004196963.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp.
           M18]
 gi|320124127|gb|ADW11687.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
          Length = 442

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 131/317 (41%), Gaps = 37/317 (11%)

Query: 302 VGSGKT-------LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            G+GKT       L  L+  + A   G + +++ P   LA Q  + +K Y +  ++    
Sbjct: 47  TGTGKTASFVLPALERLLVPSPARGKGPRILVLTPTRELANQVVDAVKTYGKFMRVRCGS 106

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQ 409
           I G MP   +   L +       II+ T     D     SI + +L ++++DE  R    
Sbjct: 107 ILGGMPYREQMMLLSQ----PVDIIVATPGRLIDHLDRRSINFSRLEMLVLDEADRM--- 159

Query: 410 QRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
               L    +     +  A P  R TL+ T+  D  ++K+ ++   + P++  +      
Sbjct: 160 ----LDMGFSEDVDRIAAAAPAERQTLLFTATMDDAMAKLAQRLL-KDPVRVAVDGQQLT 214

Query: 469 DEVIE-RLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAII 521
           +  IE RL V      K   +   + +   +    F +  +  + L     S   + A +
Sbjct: 215 NLSIEQRLHVTDDMRHKNRLLQHLVADASVTKAIIFSATKKDADQLAFELYSQGHAAAAL 274

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG MS   +   + + + G  +LL+AT V   G+DV   S +I  +   F    +H++ G
Sbjct: 275 HGDMSQGARNRTITNMRRGKVRLLVATDVAARGLDVSGISHVINYDLPKFAEDYVHRI-G 333

Query: 582 RVGR----GEEISSCIL 594
           R GR    G  IS C +
Sbjct: 334 RTGRAGATGIAISFCSM 350


>gi|224052119|ref|XP_002191015.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Taeniopygia guttata]
          Length = 589

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 137/332 (41%), Gaps = 47/332 (14%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGG------QAVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    + LI    +V   G      + +++ P   LA Q  +  K  T+ 
Sbjct: 63  IAQARTGTGKTFSFALPLIEKLQSVTQDGRRGRAPKVLVLVPTRELATQVAKDFKNLTK- 121

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P    ++ L+ +  G   I++GT    QD IQ  KL L     V++DE
Sbjct: 122 -KLSVACFYGGSPY---KEQLDLLKSG-IDILVGTPGRIQDHIQNSKLELSSVKHVVLDE 176

Query: 403 -QHRFG------VQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             H         V++ L  + K  +   P  LL +AT  PR +        D++K   + 
Sbjct: 177 VDHMLDMGFAEQVEEILGSSYKRGSENNPQTLLFSAT-CPRWV-------YDVAKKYMRD 228

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERF 507
              + I  +     R    +E L +     ++A  +   I+    S  R++V     +  
Sbjct: 229 E-YEQIDLIGKKAQRTATTVEHLAIQCRSSQRAGVLGDIIQVYSGSRGRTIVFCETKKEA 287

Query: 508 NSL--HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           N L  +         +HG +    +E  +  F+NG  ++LIAT V   G+D+ +  ++I 
Sbjct: 288 NELAMNASLKQDAQSLHGDIPQKQREITLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQ 347

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +      + +H+  GR GR      CI L+ 
Sbjct: 348 CSPPKDVDSYIHR-SGRTGRAGRTGICICLFQ 378


>gi|223997764|ref|XP_002288555.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975663|gb|EED93991.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 369

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 131/312 (41%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT V  I+    ++      Q +I++P   LA+Q    +        +   
Sbjct: 37  IAQSQSGTGKTAVFSISSLQLLDERSNDPQVLILSPTRELAEQTQRVVSSLGDFMNVKCH 96

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G       RK L++       ++ GT     D I+   L        I+   DE   
Sbjct: 97  ACIGGKSLGEDRKVLQQ----GVQVLSGTPGRVYDLIKRGDLTTRALKAFIIDEADEMLN 152

Query: 406 FGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G ++++    +   P   V+L++AT +P          +++ ++T K     PI+   I
Sbjct: 153 KGFKEQIYDIYRYLPPQTQVVLVSAT-LP----------VEVLEMTRKFMN-DPIR---I 197

Query: 464 PINRIDEVIERLKVVLSEGKKAYW----ICPQIEEKKES------NFRSVVERFNSLHEH 513
            + R +  +E +K      +K  W    +C   +    +      N +  V+   +    
Sbjct: 198 LVKRDELTLEGIKQFFVSVEKEEWKFDTLCDLYDTLTVTQAVIFCNTKQKVDWLATKMRE 257

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              ++A +HG M+  +++ VM+ F++G+ ++LIAT +   GIDV   S++I  +      
Sbjct: 258 SNFTVAAMHGDMTQDERDKVMEDFRSGSSRVLIATDLWGRGIDVQQVSLVICYDLPTNRE 317

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 318 LYIHRI-GRSGR 328


>gi|254381080|ref|ZP_04996445.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194339990|gb|EDX20956.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 508

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 133/321 (41%), Gaps = 39/321 (12%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  +   A+I+ P   LAQQ  + +  Y +  ++ +
Sbjct: 123 RGRTGSGKTLAFGLALLARTAGQRAEARQPLALILVPTRELAQQVADALTPYARAVKLRL 182

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHR-- 405
             + G MP   +  AL     G A I++ T    +D I     +  ++ + ++DE  +  
Sbjct: 183 ATVVGGMPIGRQANALR----GGAEIVVATPGRLKDLIDRGDCRLNQVAITVLDEADQMA 238

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIK 459
              F  Q    L Q       +L +AT + R    LV   L D  +  +         ++
Sbjct: 239 DMGFMPQVTALLDQVRPEGQRMLFSAT-LDRNVDLLVRRYLTDPVVHSVDPSQGAVTTME 297

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI- 518
             ++ ++  D+     ++   +G+   ++          + +  V+R     +  +S + 
Sbjct: 298 HHVLHVHGADKHATTTEIAARDGRVIMFL----------DTKHAVDRLT--QDLLSSGVR 345

Query: 519 -AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            A +HG  S   +   +  FK G   +L+AT V   GI V +  +++  +        LH
Sbjct: 346 AAALHGGKSQPQRTRTLAQFKTGHVTVLVATNVAARGIHVDNLDLVVNVDPPTDHKDYLH 405

Query: 578 QLRGRVGRGEEISSCILLYHP 598
           +  GR  R  E  S + L  P
Sbjct: 406 R-GGRTARAGESGSVVTLVTP 425


>gi|163732038|ref|ZP_02139484.1| ATP-dependent RNA helicase, putative [Roseobacter litoralis Och
           149]
 gi|161394336|gb|EDQ18659.1| ATP-dependent RNA helicase, putative [Roseobacter litoralis Och
           149]
          Length = 504

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 149/362 (41%), Gaps = 52/362 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGGQAV 325
           +PT  Q  AI   L        +L I Q   G+GKT      ++ L+A   A     +++
Sbjct: 44  TPTPIQAGAIPPALAGRD----VLGIAQ--TGTGKTASFTLPMITLLARGRARARMPRSL 97

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    YT++ ++   ++ G +    + K +++       ++I T   
Sbjct: 98  VLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDKLIDK----GVDVLIATPGR 153

Query: 386 FQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPR 433
             D  +  KL+L     ++VDE  R         +++   LT        L  +AT  P 
Sbjct: 154 LLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTR--QTLFFSATMAPE 211

Query: 434 TLVLTS--LGDIDISKITEKPAGRKPIKTVIIPI--NRID-EVIERLKV----VLSEGKK 484
              +T+  L   +  ++  +    + I+  ++    +R D E  E+ K+    + +EG+K
Sbjct: 212 IERITNTFLSAPERVEVARQATASETIEQGVLKFKASRKDREGTEKRKLLRALIDAEGEK 271

Query: 485 ---AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
              A   C         N ++ V+      + +    A IHG +    +   +D F++G+
Sbjct: 272 CTNAIIFC---------NRKTDVDIVAKSLKKYNYDAAPIHGDLDQSQRTRTLDGFRDGS 322

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            K LIA+ V   G+DV   S +   +        +H++ GR GR       I++  P   
Sbjct: 323 LKFLIASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRI-GRTGRAGRDGKAIMICVPRDE 381

Query: 602 KN 603
           +N
Sbjct: 382 RN 383


>gi|158259929|dbj|BAF82142.1| unnamed protein product [Homo sapiens]
          Length = 406

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 126/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ + LI T ++  GIDV   S++I
Sbjct: 295 RDFTVSAMHGDMDQKERDVIMREFRSGSSRALITTDLLARGIDVQQVSLVI 345


>gi|148262457|ref|YP_001229163.1| primosomal protein N' [Geobacter uraniireducens Rf4]
 gi|146395957|gb|ABQ24590.1| replication restart DNA helicase PriA [Geobacter uraniireducens
           Rf4]
          Length = 754

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 17/175 (9%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P     SQ  A++ I+     +     +L G  GSGKT V L ++A  ++AG  A+++
Sbjct: 216 DTPLVLNDSQSEALERIIAATDGRAFAPFLLHGVTGSGKTEVYLQSIAHVLDAGKTALVL 275

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALF 386
            P   L  Q    +K++       + ++   +    R     RI   +  I+IG   ALF
Sbjct: 276 VPEIALTPQ---LVKRFKSRFTCGIAVLHSGLSDGERYDEWRRIRRKEVSIVIGARSALF 332

Query: 387 QDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPI 431
                   + +++VDE+H          R+  +    +  K +   V+L +ATP+
Sbjct: 333 A---PLSAIGIIVVDEEHEASYKQSEGFRYNARDLALVRGKMSKAVVILGSATPL 384


>gi|152986565|ref|YP_001346544.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150961723|gb|ABR83748.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 447

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 135/345 (39%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI   L     K R L +     G+GKT    + +   +   G        +
Sbjct: 23  TPTPIQAQAIPPAL-----KGRDL-LAAAQTGTGKTAAFALPLLQRLTLEGPQVAANSVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHII 379
           A+++ P   LA+Q +  I+ Y Q+  +   +  G +   PQ  + RK ++ +      ++
Sbjct: 77  ALVLVPTRELAEQVHGSIRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDVLVATPGRLL 136

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
                  Q+++Q+ +L  +++DE  R    G  + L            L  A P  R  +
Sbjct: 137 ---DLYRQNAVQFARLQALVLDEADRMLDLGFARELDE----------LFAALPRKRQTL 183

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           L S    D  +       R P+   + P N   + + +  V + + +KA   C  ++  +
Sbjct: 184 LFSATFSDAIRTLAGELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANR 243

Query: 497 E------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  +  R  VE    L +    +   IHG      +   +  FK G   LL+AT V
Sbjct: 244 WRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDV 303

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
              G+D+ +  +++  +        +H++ GR GR       + L
Sbjct: 304 AARGLDIEEMPLVVNFDLPIVAEDYVHRI-GRTGRAGATGQALSL 347


>gi|89054065|ref|YP_509516.1| DEAD/DEAH box helicase-like [Jannaschia sp. CCS1]
 gi|88863614|gb|ABD54491.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
          Length = 706

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 140/339 (41%), Gaps = 47/339 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQ-HYEFIKKYTQ 346
           ++    GSGKTL   +A+A  +    +         A+++AP   LA Q   E    + Q
Sbjct: 35  LVSAQTGSGKTLGFGLAIAPQLFGEAEAFGAAGAPLALVIAPTRELAMQVKRELSWLFAQ 94

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVD 401
               +   + G M     R+AL R     AHI++ T    +D     SI    L  V++D
Sbjct: 95  AGATLASTV-GGMDMRDERRALAR----GAHIVVATPGRLKDHIMRGSIDLSSLKAVVLD 149

Query: 402 EQHR---FGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITE---KPAG 454
           E       G ++ L+           ++  +P  R TL+ ++     I+++ +   K A 
Sbjct: 150 EADEMLDLGFREDLEF----------ILDTSPADRQTLMFSATVPAAIARLAQNYQKDAV 199

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSL 510
           R  + T        D     L V   +G+ A     +  E   +    N R+ V R  + 
Sbjct: 200 R--VATTTGEKQHSDIEYRALTVSARDGENAIINVLRFYEAPNAIVFCNTRATVNRMTTR 257

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             +   S+  + G ++  ++ + + + ++G  ++ +AT V   GID+ +  ++I      
Sbjct: 258 LSNRGFSVVALSGELTQSERTNALQAMRDGRARVCVATDVAARGIDLPNLELVIHAELPT 317

Query: 571 FGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRL 608
                LH+  GR GR G +  S +++  PP ++    RL
Sbjct: 318 NQDTLLHR-SGRTGRAGRKGVSALIV--PPAARKKAQRL 353


>gi|315640288|ref|ZP_07895405.1| primosome assembly protein PriA [Enterococcus italicus DSM 15952]
 gi|315483950|gb|EFU74429.1| primosome assembly protein PriA [Enterococcus italicus DSM 15952]
          Length = 799

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 7/141 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P      QE+A+K   Q   Q    L  L+G  GSGKT V L A+A+ ++ G  A+++ P
Sbjct: 261 PLQLNAEQEAALKACEQAEGQSQTFL--LEGITGSGKTEVYLQAIASVLKKGKTAMMLVP 318

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q    ++++       V ++   + Q  +     +I   +A +++G  +     
Sbjct: 319 EIALTPQ---MVERFKGRFGEAVAVLHSGLSQGEKYDEWRKIERKEAQVVVGARSAVFAP 375

Query: 390 IQYYKLILVIVDEQHRFGVQQ 410
           ++   + L++VDE+H    +Q
Sbjct: 376 LE--DIGLIVVDEEHESSYKQ 394


>gi|225163787|ref|ZP_03726086.1| primosomal protein N' [Opitutaceae bacterium TAV2]
 gi|224801617|gb|EEG19914.1| primosomal protein N' [Opitutaceae bacterium TAV2]
          Length = 769

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 82/195 (42%), Gaps = 14/195 (7%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +P +    Q++A   +   ++ +   + +L G  GSGKT V L A+  A+  GG  V + 
Sbjct: 222 LPHNLNDEQQTAADALRASLAARQFGVTLLHGVTGSGKTEVYLRAVHDALADGGGVVFLV 281

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           P   L  Q    ++   +       ++    ++    R      +A G+A +++G  +  
Sbjct: 282 PEVALTPQTVARLRGRLEAIAPGHNVVVWHSHLSDGERMDGWLALATGEARVVVGARSAI 341

Query: 387 QDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
              ++   L L++VDE+H          R+  +    +  K    H LL +ATP   T  
Sbjct: 342 FAPVR--NLRLIVVDEEHEPAYKQDETPRYHGRDVAVMRAKLAGAHCLLGSATPSLETHA 399

Query: 437 LTSLGDIDISKITEK 451
               G   + ++T++
Sbjct: 400 NAKAGKYSLLRLTKR 414


>gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
 gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
          Length = 508

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 145/346 (41%), Gaps = 38/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT----LVALIAMAAAVEAG---GQA 324
           +PT  Q  AI  +L+       ++ + Q   G+GKT    L  L  +A    AG    + 
Sbjct: 32  TPTPIQTQAIPPVLEGRD----VIGLAQ--TGTGKTAAFTLPILHRLAPGKPAGPKKARV 85

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I++P   L+ Q  + +K   +   +   ++ G +     R  ++ +A G   ++I T  
Sbjct: 86  LILSPTRELSAQIAKTVKDLGRKLSLRSAVVVGGV---SIRPQIKTLASG-VDVLIATPG 141

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLT 438
              D I+   + L     V++DE       Q L +        +L MT  P  R TL+ +
Sbjct: 142 RLMDLIEQRAVSLNEIEVVVLDE-----ADQMLDIGFMPAIKRILAMT--PATRQTLLFS 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +    +I +++++     PI+  +IP  +  + +E   + +  G K   +   I ++K  
Sbjct: 195 ATMPKEIRQLSDRHL-TDPIEVSVIPAKKTADRVEHSVMHMQPGAKMGALASLIRDRKGE 253

Query: 498 -----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  +   ++     E    + A IHG  S   +E  +  F+ GT  +LIAT +  
Sbjct: 254 RVIVFTRTKRGADKAAKRLEGDGINAAAIHGNKSQGQRERALAGFRAGTVPVLIATDIAA 313

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            GIDV   S+++     +     +H++ GR  R     + +    P
Sbjct: 314 RGIDVPGVSLVVNYELPNVPEVYVHRI-GRTARAGAEGTAVTFCAP 358


>gi|114794629|pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
           Trapped Dead-Box Helicase Bound To Rna
 gi|114794633|pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
           Trapped Dead-Box Helicase Bound To Rna
 gi|217035449|pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
 gi|217035453|pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
          Length = 413

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 61  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 114

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 115 TRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 167

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   P   V+L++AT     L 
Sbjct: 168 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 227

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEG 482
           +T+    D  +I  K      + IK   + + R +              I +  +  +  
Sbjct: 228 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 287

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 288 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 328

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 329 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 370


>gi|62180220|ref|YP_216637.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224583853|ref|YP_002637651.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238911959|ref|ZP_04655796.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|62127853|gb|AAX65556.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|224468380|gb|ACN46210.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|322714692|gb|EFZ06263.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 457

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 137/326 (42%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI------ 399
              + G  P   +R +L+       HII+ T     D +Q   +      ILV+      
Sbjct: 105 T--LCGGQPFGAQRDSLQH----APHIIVATPGRLLDHLQKETVSLDALHILVMDEADRM 158

Query: 400 --------VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                   +DE  RF    R  L   AT P  +   +  + +  +      I+I  +   
Sbjct: 159 LDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPI-----RIEIDTVDAL 213

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           PA  +             E I  L+ +LS+ + A  +   +    + + ++V +  N++ 
Sbjct: 214 PAIEQQFFE-----TSAHEKISLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALNAVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 Q---SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELVVNYELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFC 345


>gi|42784637|ref|NP_981884.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42740569|gb|AAS44492.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 481

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 133/326 (40%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID-ISKITEKPAGRKPIKTVI 462
             F  Q    + +  T    +L +AT +P         D++ +S+          IK   
Sbjct: 161 MGFIDQVEAIIDELPTNRMTMLFSAT-LPE--------DVERLSRTYMNAPTHIEIKAAG 211

Query: 463 IPINRI---------DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           I  ++I         DE    LK V + E   +  I  + +E  +  +R + +R N   +
Sbjct: 212 ITTDKIEHTLFEAIEDEKFSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-KRANYPCD 270

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                   IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +     
Sbjct: 271 K-------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEK 323

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
            + +H+  GR GR       I    P
Sbjct: 324 ESYVHRT-GRTGRAGNSGKAITFITP 348


>gi|310641357|ref|YP_003946115.1| dead/deah box helicase domain-containing protein [Paenibacillus
           polymyxa SC2]
 gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
           polymyxa SC2]
          Length = 525

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 133/313 (42%), Gaps = 46/313 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I M   +    +   A+IMAP   LA Q  E I+K ++   +   
Sbjct: 43  IGQAQTGTGKTAAFGIPMINKISKNDEKIRALIMAPTRELAIQVAEEIEKLSRFKGLRTL 102

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G      + +AL++    +  IIIGT     D I    + L     V++DE      
Sbjct: 103 PIYGGQDIVRQIRALKK----KPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLD 158

Query: 407 -GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  + ++  L Q       +L +AT  P           +I ++ E+   + P    +I
Sbjct: 159 MGFMEDIQSILKQVPDERQTMLFSATMPP-----------NIKRLAEQFL-KDPEHVSVI 206

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIE-EKKESN--FRSVVERFNSLHEHFTS---S 517
           P      +I++  + + E +K   +   I+ E  E    F     R + L E       S
Sbjct: 207 PKQVSAPLIDQAYIEVPERQKFEALSRLIDMESPELAIVFGRTKRRVDELAEALQKRGYS 266

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-- 575
              +HG +S   +++VM  F++G+  +L+AT V   G+DV   + ++     +F L Q  
Sbjct: 267 ADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVAARGLDVSGVTHVV-----NFDLPQDP 321

Query: 576 ---LHQLRGRVGR 585
              +H++ GR GR
Sbjct: 322 ESYVHRI-GRTGR 333


>gi|195343855|ref|XP_002038506.1| GM10578 [Drosophila sechellia]
 gi|194133527|gb|EDW55043.1| GM10578 [Drosophila sechellia]
          Length = 724

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 145/354 (40%), Gaps = 47/354 (13%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  ++ +   
Sbjct: 331 TGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNT 390

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G  P+  + + L+R       I+I T     D     S    +   +++DE  R   
Sbjct: 391 CVFGGAPKGGQMRDLQR----GCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLD 446

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGD-IDISKITEKPAGRKPIK 459
             F  Q R  ++Q       L+ +AT  P+    L    LG+ I I+  + + +    I+
Sbjct: 447 MGFEPQIRKIVSQIRPDRQTLMWSAT-WPKEVKQLAEDFLGNYIQINIGSLELSANHNIR 505

Query: 460 TVIIPINRIDEVIERLKVVLSE----GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            V+   +   +  E+LK +LS+     +    I   +E K+       V+        F 
Sbjct: 506 QVVDVCDEFSKE-EKLKTLLSDIYDTSESPGKIIIFVETKRR------VDNLVRFIRSFG 558

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHF 571
                IHG  S  +++ V+  F++G   +L+AT V   G+DV     +I     +N+E +
Sbjct: 559 VRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDY 618

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
               +H++ GR GR     +    +    +K +   + VL+        A E+L
Sbjct: 619 ----IHRI-GRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENL 667


>gi|126179364|ref|YP_001047329.1| Hef nuclease [Methanoculleus marisnigri JR1]
 gi|125862158|gb|ABN57347.1| helicase domain protein [Methanoculleus marisnigri JR1]
          Length = 751

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 16/142 (11%)

Query: 303 GSGKTLVALIAMAAAVEA-GGQAVIMAPIGILAQQHYEFIKKY------TQNTQIIVEII 355
           G GKT VALI  A+ + +  G+ +++AP   L +QH  F K++      ++  +    + 
Sbjct: 39  GLGKTAVALIVAASRLHSHPGRVLVLAPTKPLVEQHLRFFKQFLLIRDGSEPDESDFAMF 98

Query: 356 TGNMPQAHRRKALE--RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR-FGVQQRL 412
           TG+ P A R +A E  R+      +I   +           ++L++VDE HR  G    +
Sbjct: 99  TGDTPPAERARAWEACRVCFATPQVI--KNDCLAGRYSLADVVLLVVDECHRAVGNYAYV 156

Query: 413 KL----TQKATAPHVLLMTATP 430
            L       A  P +L MTA+P
Sbjct: 157 FLAGHYCTAAKDPLLLAMTASP 178


>gi|118092589|ref|XP_421574.2| PREDICTED: similar to Gu protein [Gallus gallus]
          Length = 690

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 133/332 (40%), Gaps = 47/332 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   +++  Q          +++ P   LA Q  +  K  T+ 
Sbjct: 166 IAQARTGTGKTFSFAIPLTEKLQSVSQDEKRGRSPKVLVLVPTRELAIQVAKDFKNLTR- 224

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P     KA   +      I++GT    +D IQ  KL L     V++DE
Sbjct: 225 -KLSVACFYGGTPY----KAQFDLLKNGIDILVGTPGRIKDHIQNSKLDLSNVKHVVLDE 279

Query: 403 -QHRFG------VQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             H         V++ L    K     +P  LL +AT  PR +        D++K   K 
Sbjct: 280 VDHMLDMGFAEQVEEILGFAYKKGSENSPQTLLFSAT-CPRWV-------YDVAKKYMK- 330

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERF 507
              + +  +     R    +E L +     ++A  +   I+    S+ R++V     +  
Sbjct: 331 GEYEQVDLIGKKTQRTATTVEHLAIQCRSSQRAEVLGDIIQVYSGSHGRTIVFCETKKEA 390

Query: 508 N--SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           N  +L+         +HG +    +E  +  F+NG  ++LIAT V   G+D+ +  ++I 
Sbjct: 391 NELALNSALKQEAQSLHGDIPQKQREVTLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQ 450

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +      + +H+  GR GR      CI  Y 
Sbjct: 451 CSPPKDVDSYIHR-SGRTGRAGRTGICICFYQ 481


>gi|91223442|ref|ZP_01258707.1| putative ATP-dependent DNA helicase RecQ [Vibrio alginolyticus
           12G01]
 gi|91191528|gb|EAS77792.1| putative ATP-dependent DNA helicase RecQ [Vibrio alginolyticus
           12G01]
          Length = 641

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 135/331 (40%), Gaps = 46/331 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            GSGK+L   +    A       ++++P+  L +    F+    Q+  I    I  +  +
Sbjct: 42  TGSGKSLCYQLP---ATILPNLTLVISPLLALMKDQLSFL----QSKGIAAASIDSSQSR 94

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQR-- 411
              ++ +  + +GQ  I++ +     +  F++ I+   + L+++DE H    +G   R  
Sbjct: 95  EEAQQVMAGVKNGQIKILMISVERLKNERFREFIRQVPISLMVIDEAHCISEWGHNFRPD 154

Query: 412 -LKLTQ---KATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
            LKL Q   +   P  LL+TAT  P  +  +    DI    IT     R  +   +IP  
Sbjct: 155 YLKLPQYQRELNIPQSLLLTATATPAVIEDMQKKFDISSEHITVTGFYRSNLDISVIPCE 214

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
              +  +  +++ S  K    +    ++  E   +S++        H   +    H  M 
Sbjct: 215 ETKKQEQLSEIIASSPKLPTIVYVTQQQTAERVAKSLI--------HIGINAHAYHAGMK 266

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGR 582
              +E +   F +G    ++AT    +G+D  D   +I     HF L +      Q  GR
Sbjct: 267 SDVREQIQQQFMDGQIDCIVATIAFGMGVDKSDIRRVI-----HFDLPKSIENYAQEIGR 321

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            GR  + S CILL        + + L+VL+N
Sbjct: 322 AGRDGQRSECILL-------GNTSGLTVLEN 345


>gi|15601523|ref|NP_233154.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121590875|ref|ZP_01678199.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121728661|ref|ZP_01681679.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V52]
 gi|147671636|ref|YP_001215545.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395]
 gi|153818645|ref|ZP_01971312.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC
           8457]
 gi|153820657|ref|ZP_01973324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           B33]
 gi|229506074|ref|ZP_04395583.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229510069|ref|ZP_04399549.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229605606|ref|YP_002876310.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254849928|ref|ZP_05239278.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|255746472|ref|ZP_05420419.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262152368|ref|ZP_06028501.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
 gi|262168609|ref|ZP_06036305.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|9658191|gb|AAF96666.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547282|gb|EAX57403.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121629072|gb|EAX61518.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V52]
 gi|126510798|gb|EAZ73392.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC
           8457]
 gi|126521700|gb|EAZ78923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           B33]
 gi|146314019|gb|ABQ18559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           O395]
 gi|227015171|gb|ACP11380.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
 gi|229352514|gb|EEO17454.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229356425|gb|EEO21343.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229372092|gb|ACQ62514.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254845633|gb|EET24047.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|255736226|gb|EET91624.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262023138|gb|EEY41843.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262030819|gb|EEY49450.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
          Length = 422

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 132/337 (39%), Gaps = 41/337 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQG-DVGSGKTLV-------ALIAMAAAVEAGGQ 323
           +PT  Q+ AI  +LQ          +L G   G+GKT           I      EA  +
Sbjct: 28  NPTPIQQQAIPHVLQGKD-------VLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSK 80

Query: 324 ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I
Sbjct: 81  EIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHL----RGGVDILI 136

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D      L L     +++DE  R      +   Q+      +L   +P+ +TL
Sbjct: 137 ATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR------VLRRLSPLRQTL 190

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             ++  D  I  +  +   R PI+  + P N   E ++++   + + +K   +   I  K
Sbjct: 191 FFSATFDSKIKAVAYRIM-RDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSK 249

Query: 496 KESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                  F    +  ++L E           I+G  S   ++  +D FK G  + LIAT 
Sbjct: 250 NWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATD 309

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           V   G+D+     ++  +        +H++ GR GR 
Sbjct: 310 VAARGLDIAQLEQVVNYDMPFKAEDYVHRI-GRTGRA 345


>gi|254700448|ref|ZP_05162276.1| primosome assembly protein PriA [Brucella suis bv. 5 str. 513]
 gi|261750949|ref|ZP_05994658.1| primosome assembly protein PriA [Brucella suis bv. 5 str. 513]
 gi|261740702|gb|EEY28628.1| primosome assembly protein PriA [Brucella suis bv. 5 str. 513]
          Length = 744

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 24/190 (12%)

Query: 239 ALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSP----------------TKSQESAI 281
            L   R       G+ + V +G  AQ I   I   P                ++ Q++A 
Sbjct: 160 GLAWTRSGLAHAAGVSLTVVDGVKAQGIFEEIMLPPPAVVAKPDTDYARATLSQDQQAAA 219

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           + + + +      + +L G  GSGKT V   A+A A++AG Q +I+ P   L QQ   F+
Sbjct: 220 EMLSEAVEAGGFSVSLLDGVTGSGKTEVYFEAVAKALDAGRQVLILLPEIALTQQ---FL 276

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIV 400
            ++             ++    R +   ++A G   ++ G   ALF   + + +L L++V
Sbjct: 277 DRFHDRFGAKPAEWHSDLAPRTRERVWRQVAEGTVRVVAGARSALF---LPFKELGLIVV 333

Query: 401 DEQHRFGVQQ 410
           DE+H    +Q
Sbjct: 334 DEEHDPAYKQ 343


>gi|227511843|ref|ZP_03941892.1| possible ATP-dependent DNA helicase [Lactobacillus buchneri ATCC
           11577]
 gi|227084933|gb|EEI20245.1| possible ATP-dependent DNA helicase [Lactobacillus buchneri ATCC
           11577]
          Length = 467

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 6/120 (5%)

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++I++V++R+K  + +  K    CP       S   +++    +  E   + IA  +G M
Sbjct: 242 DKIEKVVDRIKEFVYKDIKTIIYCPY-----SSQCATLMLNLRATDEKVRNKIAYYYGSM 296

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S   K     SFKNG   ++IATT   +GID+ D    +   A   GL++  Q  GR  R
Sbjct: 297 SSDQKVQNYTSFKNGESTIMIATTAFGMGIDIDDIQ-AVYHLAPTGGLSEYVQEIGRAAR 355


>gi|224031067|gb|ACN34609.1| unknown [Zea mays]
          Length = 414

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 126/314 (40%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 82  IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 141

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 142 ACVGGTSV----REDQRILGSGVHVVVGTPGRVFDMLRRQSLRPDNIKMF--VLDEADEM 195

Query: 404 HRFGVQQRL-KLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++  + Q   A   V + +AT  P  L +T        K   KP        V
Sbjct: 196 LSRGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEITR-------KFMNKP--------V 240

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K       K  W    + +  E+          N R  V+      
Sbjct: 241 RILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKM 300

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 301 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 360

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 361 PENYLHRI-GRSGR 373


>gi|224153793|ref|XP_002337398.1| predicted protein [Populus trichocarpa]
 gi|222838972|gb|EEE77323.1| predicted protein [Populus trichocarpa]
          Length = 390

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 123/312 (39%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 58  IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 117

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-------YYKL-ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++       Y K+ +L   DE   
Sbjct: 118 ACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 173

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++        +   V + +AT  P  L +T        K   KP        V I
Sbjct: 174 RGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR-------KFMNKP--------VRI 218

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 219 LVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRG 278

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 279 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 338

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 339 NYLHRI-GRSGR 349


>gi|163748921|ref|ZP_02156172.1| ATP-dependent DNA helicase RecQ [Shewanella benthica KT99]
 gi|161331297|gb|EDQ02185.1| ATP-dependent DNA helicase RecQ [Shewanella benthica KT99]
          Length = 654

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 134/319 (42%), Gaps = 51/319 (15%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            GSGK++   +    A+      ++++P+  L Q    F+K+      I    I     +
Sbjct: 46  TGSGKSICYQLP---AIALPHLTLVVSPLLALMQDQLAFLKQ----KGISAASIDSTQSR 98

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQR-- 411
               + +  I  GQ  I++ +     +  F+  I    L L++VDE H    +G   R  
Sbjct: 99  EQANEIMRGIRSGQIKILMISVERLNNERFRQFISEIPLSLLVVDEAHCISEWGHNFRPD 158

Query: 412 -LKLT---QKATAPHVLLMTATPIPRTLVLTSLGD-IDISKITEKPAG--RKPIKTVIIP 464
            LKL    Q+   P  LL+TAT  P+  V+  +GD   I+K      G  R  +   +  
Sbjct: 159 YLKLPRYRQELNIPQTLLLTATATPK--VIEDMGDKFGIAKENVSLTGFYRANLHLAVQG 216

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----SIAI 520
           +  +D++              +W+ P+ +      + ++ +    + EH +S    +IA 
Sbjct: 217 VKTLDKL----------DTLCHWLQPR-QGLSGIIYVTLQKTAEQVAEHLSSRNIPAIAY 265

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----L 576
             G  SD+ +  + D F +G  +L++AT    +GID  D   ++     H+ L +     
Sbjct: 266 HAGMNSDV-RSKIQDDFMSGRQQLIVATIAFGMGIDKSDIRYVV-----HYDLPKSVENY 319

Query: 577 HQLRGRVGRGEEISSCILL 595
            Q  GR GR    S C++L
Sbjct: 320 AQEIGRAGRDGGDSDCLVL 338


>gi|153819958|ref|ZP_01972625.1| primosomal protein N` [Vibrio cholerae NCTC 8457]
 gi|126509502|gb|EAZ72096.1| primosomal protein N` [Vibrio cholerae NCTC 8457]
          Length = 427

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    SQ+     +L+G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 199 PRLNQEQAIA-IAAVNSQQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 258 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 312 FAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 372 KYHHLQLTQRAGNALPTRN 390


>gi|220931831|ref|YP_002508739.1| primosomal protein N' [Halothermothrix orenii H 168]
 gi|219993141|gb|ACL69744.1| primosomal protein N' [Halothermothrix orenii H 168]
          Length = 745

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 7/142 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P   T  Q+  I+ I   + +      +L G  GSGKT V +   + AVE G   +I+ P
Sbjct: 206 PVKLTPVQKQVIEKIEDSIEKGVPDTFLLHGVTGSGKTEVYINTASRAVEQGKGVIILVP 265

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            I +       F  K+ +     V ++  N+    R     R+  G+A I+IG  +    
Sbjct: 266 EISLTPLMVRRFYNKFGEQ----VAVMHSNLSLGERYDEWRRLKEGKAKIVIGARSAVFS 321

Query: 389 SIQYYKLILVIVDEQHRFGVQQ 410
            ++   L L+++DE+H    +Q
Sbjct: 322 PVR--NLGLIVIDEEHENSYKQ 341


>gi|115359843|ref|YP_776981.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria AMMD]
 gi|115285131|gb|ABI90647.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria AMMD]
          Length = 465

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 137/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++      QA+++ P   LA Q  + +++  +  + + V
Sbjct: 48  IAQAKTGSGKTAAFSLALLARLDTRRFDVQAMVLCPTRELADQVAQEVRRLARAEENVKV 107

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHI++GT     D +    L L     +++DE  R  
Sbjct: 108 LTLCGGTPMRPQAQSLE---HG-AHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRM- 162

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               L +        V  M  T   +TL+ ++     I+K++++   R P K V +    
Sbjct: 163 ----LDMGFFDDIAKVARMCPT-TRQTLLFSATYPDGIAKLSQQFL-RNP-KEVKLEERH 215

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            +  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 216 DNSKIRQRFYEVAETERLHAVGQLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 275

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 276 -HGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI- 333

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 334 GRTGRADQ 341


>gi|327489231|gb|EGF21024.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1058]
          Length = 363

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 140/339 (41%), Gaps = 51/339 (15%)

Query: 302 VGSGKTLVALIA--MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            G+GKTL  L    +        Q +I+AP   LA Q +E  K + +   + V+++    
Sbjct: 46  TGTGKTLAYLFPSLLKLTPRKAQQLLILAPNTELAGQIFEVCKTWAEPLGLTVQLLLSGS 105

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKL 414
            Q   ++ +ER+  G   IIIGT     + ++  K+ +     +I+DE  +     +   
Sbjct: 106 SQ---KRQIERLKKG-PEIIIGTSGRIFELVKLKKIKMMNVETIILDEFDQLLSDSQYHF 161

Query: 415 TQKAT--AP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             K T  AP    ++ M+AT              D  KI E         T+ I I+  D
Sbjct: 162 VDKITHYAPRDHQLVYMSAT-----------AKFDHDKIAEN--------TLEISID--D 200

Query: 470 EVIERLKVVLSEGKKAYWI-----CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
           +V++ ++    + +K   +        +E+ +   F + +    S  E      A     
Sbjct: 201 QVLDNIQHFYMQVEKRDKVDLLRKLSNVEDFRGLVFFNALSDLGSAEEKLQYREANAVSL 260

Query: 525 MSDID---KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            SD++   ++ ++D FK     LL+AT ++  GID +D+   ++       L       G
Sbjct: 261 ASDVNVKFRKVILDKFKEHQITLLLATDLVARGID-IDSLECVVNYELPRDLETYTHRSG 319

Query: 582 RVGR-GEEISSCILLYHP----PLSKNSYTRLSVLKNTE 615
           R GR G+E     L+ HP     L K +  R  VLKN E
Sbjct: 320 RTGRMGKEGYVITLISHPEELKTLKKYASVREIVLKNQE 358


>gi|327469534|gb|EGF15003.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK330]
          Length = 363

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 141/337 (41%), Gaps = 47/337 (13%)

Query: 302 VGSGKTLVALIA--MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            G+GKTL  L    +    +   Q +I+AP   LA Q +E  K + +   +  +++    
Sbjct: 46  TGTGKTLAYLFPSLLKLTPKKAQQLLILAPNTELAGQIFEVCKTWAEPLGLTAQLLLSGS 105

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKL 414
            Q   ++ +ER+  G   IIIGT     + ++  K+ +     +I+DE       Q L  
Sbjct: 106 SQ---KRQIERLKKG-PEIIIGTPGRIFELVKLKKIKMMNVETIILDE-----FDQLLSD 156

Query: 415 TQKATAPHVLLMTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           +Q     H +   A   PR    + +++    D  KI E         T+ I I+  D+V
Sbjct: 157 SQY----HFVDKIAHYAPRDHQLVYMSATAKFDHDKIAEN--------TLEISID--DQV 202

Query: 472 IERLKVVLSEGKKAYWI-----CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
           ++ ++    + +K   +        +EE +   F + +    S  E      A      S
Sbjct: 203 LDNIQHFYMQVEKRDKVELLRKLSNVEEFRGLVFFNALSDLGSAEEKLQYREANAVSLAS 262

Query: 527 DID---KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           D++   ++ ++D FK     LL+AT ++  GID +D+   ++       L       GR 
Sbjct: 263 DVNVKFRKVILDKFKEHQITLLLATDLVARGID-IDSLECVVNYEPPRDLETYTHRSGRT 321

Query: 584 GR-GEEISSCILLYHP----PLSKNSYTRLSVLKNTE 615
           GR G+E     L+ HP     L K +  R  VLKN E
Sbjct: 322 GRMGKEGYVITLISHPEELKTLKKYASVREIVLKNQE 358


>gi|193678797|ref|XP_001952274.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Acyrthosiphon pisum]
          Length = 621

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 134/320 (41%), Gaps = 43/320 (13%)

Query: 302 VGSGKTLVALIAMAAAVE---------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            G+GKTL  L+     ++          G   +++AP   L  Q    +KKY+      +
Sbjct: 244 TGTGKTLAFLLPAFIHIDFQPTPRSERKGPSILVLAPTRELVLQIESEVKKYSYKGIKAM 303

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
            I  G    A   K  E +  G   I+I T     D     +I    +  +I+DE  R  
Sbjct: 304 SIYGG----ASSGKQKEVLRKG-VEIVIATPGRLNDFVGSGAIDLSDVTFLILDEADRML 358

Query: 406 -FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI-- 462
             G + +++++         L+   P  +T++ ++     + ++  K     PI+ ++  
Sbjct: 359 DLGFEPQIRVS---------LLRVRPDRQTIMTSATWPPGVKRLA-KSYTTNPIQVMVGS 408

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFT 515
           + +  ++ V + + +++ E +K  W+   ++            N +  V++ +S      
Sbjct: 409 LDLTTVNTVKQDI-LIMDEEEKEVWLDDFLKSCSADDKIIIFVNRKVTVDQLSSDLCMKG 467

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +  IHG     D+E  ++S +NG   +LIAT V   GID+ D +++I  +        
Sbjct: 468 YIVESIHGGREQCDREMALESLRNGEVNILIATDVASRGIDINDITVVINYDFTKDIEEY 527

Query: 576 LHQLRGRVGRGEEISSCILL 595
           +H++ GR GR  +    I L
Sbjct: 528 VHRV-GRTGRAGKTGLAITL 546


>gi|14475571|emb|CAC41975.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
          Length = 1964

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 6/103 (5%)

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE---SVMDSFKNGTCKLLIATTVIEVG 554
           SN  S++++     E+  +   + H     +D E   S++  F++G C+L++ T V+E G
Sbjct: 213 SNLTSMLKK-EPFQEYLHTKRLVGHNGDDGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEG 271

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           IDV D +I+I  +     L  L Q RGR  R +  S  I++Y+
Sbjct: 272 IDVQDCNIVICYDG-ILSLKSLIQRRGR-ARSKNESKFIIIYN 312


>gi|46143327|ref|ZP_00135472.2| COG0514: Superfamily II DNA helicase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 604

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 114/281 (40%), Gaps = 55/281 (19%)

Query: 390 IQYYKLILVIVDEQH---RFGVQQRLKLTQ----KATAPHVLLM----TATPIPRTLVL- 437
           I   K+ L+ VDE H   ++G   R + T     + T P+V LM    TA P  R  +L 
Sbjct: 132 ISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFPNVPLMALTATADPTTRHDILQ 191

Query: 438 --------TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                   T LG  D      +P  R  ++    P+ ++ + I +      +GK     C
Sbjct: 192 HLRLTDPHTYLGSFD------RPNIRYTVQEKFKPVEQLAKFISK-----QQGKSGIVYC 240

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N R  VE           S+   H  MS   +E+V ++F+    ++++AT 
Sbjct: 241 ---------NSRKKVEEITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATI 291

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
              +GI+  +   ++     HF L +     +Q  GR GR +  S  +L Y P  +  ++
Sbjct: 292 AFGMGINKSNVRFVV-----HFDLPRSIESYYQETGRAGRDDLPSEAVLFYDP--ADYAW 344

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            +  +L+  E      + D+KQ K   I    +S   + L+
Sbjct: 345 LQKVLLEEPES----EQRDIKQHKLQAIGAFAESQTCRRLV 381


>gi|296109929|ref|YP_003616878.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
           ME]
 gi|295434743|gb|ADG13914.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
           ME]
          Length = 770

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 15/136 (11%)

Query: 303 GSGKTLVALIAMAAAV-EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           G GKT +A + +A  + +  G+ +I+AP   L +QHY   K       I+   ITG +P 
Sbjct: 38  GLGKTAIAALVIAGLLTKKDGKVLIIAPTRPLVEQHYRTFKDILNIDGIVA--ITGKIPP 95

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRFGVQQRLKLTQ 416
           A R K      + +  I I T  + ++ I   +L     IL+I DE H            
Sbjct: 96  AKREK-----IYREGKIFIATPQVIENDILSGRLKVDDFILLIADEAHHTVGNHAYAFVA 150

Query: 417 KA--TAPHVLLMTATP 430
           K+     H+L +TA+P
Sbjct: 151 KSFKDKCHILALTASP 166


>gi|165976542|ref|YP_001652135.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|165876643|gb|ABY69691.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 602

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 114/281 (40%), Gaps = 55/281 (19%)

Query: 390 IQYYKLILVIVDEQH---RFGVQQRLKLTQ----KATAPHVLLM----TATPIPRTLVL- 437
           I   K+ L+ VDE H   ++G   R + T     + T P+V LM    TA P  R  +L 
Sbjct: 130 ISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFPNVPLMALTATADPTTRHDILQ 189

Query: 438 --------TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                   T LG  D      +P  R  ++    P+ ++ + I +      +GK     C
Sbjct: 190 HLRLTDPHTYLGSFD------RPNIRYTVQEKFKPVEQLAKFISK-----QQGKSGIVYC 238

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N R  VE           S+   H  MS   +E+V ++F+    ++++AT 
Sbjct: 239 ---------NSRKKVEEITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATI 289

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
              +GI+  +   ++     HF L +     +Q  GR GR +  S  +L Y P  +  ++
Sbjct: 290 AFGMGINKSNVRFVV-----HFDLPRSIESYYQETGRAGRDDLPSEAVLFYDP--ADYAW 342

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            +  +L+  E      + D+KQ K   I    +S   + L+
Sbjct: 343 LQKVLLEEPES----EQRDIKQHKLQAIGAFAESQTCRRLV 379


>gi|60652753|gb|AAX29071.1| DEAD box polypeptide 48 [synthetic construct]
          Length = 412

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 61  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 114

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 115 TRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 167

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   P   V+L++AT     L 
Sbjct: 168 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 227

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEG 482
           +T+    D  +I  K      + IK   + + R +              I +  +  +  
Sbjct: 228 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 287

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 288 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 328

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 329 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 370


>gi|68037499|gb|AAY84883.1| DEAD-box ATPase-RNA-helicase [Triticum aestivum]
          Length = 381

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 109/247 (44%), Gaps = 41/247 (16%)

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQR 411
           P+  + + LER     A I++ T     D ++  K+ L     +++DE  R    G + +
Sbjct: 3   PKGPQLRDLER----GADIVVATPGRLNDILEMGKVSLRQVAYLVLDEADRMLDMGFEPQ 58

Query: 412 LKLTQKATAP--HVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPIKTVII 463
           ++   K   P    L+ TAT  PR +      +LT+   ++I    E  A +   + V +
Sbjct: 59  IRKIVKQVQPKRQTLMFTAT-WPREVRKIASDLLTNPVQVNIGNTDELVANKSITQHVEV 117

Query: 464 PIN-----RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             +     R+D+++ + +     G K    C        S  R   +   +L   + +S 
Sbjct: 118 TTSFEKGRRLDQILRQQE----PGSKVIIFC--------STKRMCDQLSRNLSRQYGASA 165

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG  S  +++SV+  F+ G C +L+AT V   G+DV D  +++  +        +H+
Sbjct: 166 --IHGDKSQAERDSVLSEFRTGRCPILVATDVAARGLDVKDIRVVVNYDFPTGVEDYVHR 223

Query: 579 LRGRVGR 585
           + GR GR
Sbjct: 224 I-GRTGR 229


>gi|303244918|ref|ZP_07331244.1| helicase domain protein [Methanothermococcus okinawensis IH1]
 gi|302484735|gb|EFL47673.1| helicase domain protein [Methanothermococcus okinawensis IH1]
          Length = 797

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 18/171 (10%)

Query: 270 PFSPTKSQESAI--KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQAVI 326
           PF    + ES I  + I+ +  +KN +  +     G GKT +A + +A  + +  G+ +I
Sbjct: 6   PFIKPNTMESRIYQQVIVANALKKNTLCVL---GTGLGKTAIATLTIAGMLSKKDGKVLI 62

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +AP   L +QHY  +K +    +  + ++TG +  + R+K  E     +  I I T  + 
Sbjct: 63  VAPSRPLVEQHYNSLKNFLNIDEDKIIVLTGKIAPSKRKKMWE-----EGQIFIATPQIV 117

Query: 387 QDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKA--TAPHVLLMTATP 430
           ++ I          +L+I DE H                   HVL +TA+P
Sbjct: 118 ENDIVANRVNTNDFMLLIADEAHHTTGNHSYTFVASVFRNKAHVLGLTASP 168


>gi|253682330|ref|ZP_04863127.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum D str. 1873]
 gi|253562042|gb|EES91494.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum D str. 1873]
          Length = 813

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 148/345 (42%), Gaps = 50/345 (14%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           K QE  I+ IL        +L I+    G GK++   I    A+   G  ++++P+  L 
Sbjct: 20  KGQEVVIESILNGKD----VLAIMP--TGGGKSICYQIP---ALMMNGMTIVISPLISLM 70

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII-IGTHAL----FQDS 389
           +   + IK       I    +  ++      + +E I + +  II +    L    F D+
Sbjct: 71  KDQVDSIK----TMGISCAYVNSSLNLYEFNEVIEGIKNNKYKIIYVAPERLESLEFYDA 126

Query: 390 IQYYKLILVIVDEQH---RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI--D 444
           I+  ++  + +DE H   ++G     +++ K     +   T  P       T+  ++  D
Sbjct: 127 IKDIQVSQIAIDEAHCVSQWG--HDFRVSYKNIPKFISKFTNRPRITAFTATASKEVRED 184

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAYWICPQIEEKKESN---F 500
           I ++ +    R P K  I   +R     E L + ++  G K  ++   IE  KE +   +
Sbjct: 185 IIRLLKL---RNP-KIFITGFDR-----ENLNISIIKSGSKKEYLLNYIENNKEQSGIIY 235

Query: 501 RSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            S  +  ++++E   +   S+   H  +SD ++E+  + F +    ++IAT    +GID 
Sbjct: 236 ASTRKEVDNIYEILKNKGYSVGRYHAGLSDNERENNQEEFIHDRLDIMIATNAFGMGIDK 295

Query: 558 VDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHP 598
            +   ++     H+ + +     +Q  GR GR  E S CILL+ P
Sbjct: 296 PNIRYVV-----HYSIPKSIEAYYQEIGRAGRDGEKSECILLFTP 335


>gi|225850461|ref|YP_002730695.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
 gi|225644960|gb|ACO03146.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
          Length = 403

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 141/341 (41%), Gaps = 41/341 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           +R + F  PT+ QE  I  IL+          I Q   G+GKT    I +   V      
Sbjct: 26  IRKMGFKKPTEVQEKTIPLILEGKDI------IAQAQTGTGKTAAFGIPIVETVNTKSRK 79

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  + IK   +  +I    + G     H+   ++ +  G+  +I+G
Sbjct: 80  IQALVLVPTRELAIQVTKEIKDIGREKRIFALAVYGGKSIRHQ---IDFLKKGKDVVIVG 136

Query: 382 THALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPI 431
           T    +D I+   L L      ++DE  R    G  + ++   + T P    LL +AT +
Sbjct: 137 TPGRIKDLIERKVLNLNDVKIFVLDEADRMLDMGFIEDIEFIFEQTPPVKQTLLFSAT-M 195

Query: 432 PRTLVLTSL----GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKA 485
           P+ ++  +      D +I KI  +      IK     ++   E  E L  +L+E  GKK+
Sbjct: 196 PKAIMRLAERFLNDDYEIVKIKPEEVTVDRIKQKAYRVDTGKE-FETLTKILNENEGKKS 254

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
                      E + +   E FN+           IHG  S   +E V+  F+     +L
Sbjct: 255 IVFTETKRGADELSKKLRREGFNA---------DAIHGDYSQAKRERVLRDFRRNRIDIL 305

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           +AT V   G+D+    ++   +      + +H++ GR GR 
Sbjct: 306 VATDVAARGLDIKGVDVVYNYSLPRDVESYIHRI-GRTGRA 345


>gi|192288609|ref|YP_001989214.1| primosome assembly protein PriA [Rhodopseudomonas palustris TIE-1]
 gi|192282358|gb|ACE98738.1| primosomal protein N' [Rhodopseudomonas palustris TIE-1]
          Length = 736

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 90/202 (44%), Gaps = 30/202 (14%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGI-PINVEGKIAQKIL------RNIPFSPT 274
           +PAR RL   ++L+    LL  +    KE G+ P  ++G + +  L      R  P +P 
Sbjct: 139 TPARRRLL--QILSD--GLLHGKSDVAKEAGVSPGVIDGLVDEGTLQVEQMPRENP-APE 193

Query: 275 KSQESAIKDILQDMSQKNRMLR-----------ILQGDVGSGKTLVALIAMAAAVEAGGQ 323
              + A  D   + ++    +R           ++ G  GSGKT V   A+A  +  G Q
Sbjct: 194 PDPDFAPADFSPEQARAAETMRGLVTAGGFQAALIDGVTGSGKTEVYFEAVAEVIRQGRQ 253

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           ++I+ P   L  Q   F+ ++ Q   +        +    R +    IA G+A +++G  
Sbjct: 254 SLILMPEIALTGQ---FLDRFAQRFGVRPLEWHSELTPRTRARNWASIAAGEARVVVGAR 310

Query: 384 -ALFQDSIQYYKLILVIVDEQH 404
            ALF   + Y  L L+IVDE+H
Sbjct: 311 SALF---LPYADLGLIIVDEEH 329


>gi|88859340|ref|ZP_01133980.1| hypothetical protein PTD2_20192 [Pseudoalteromonas tunicata D2]
 gi|88818357|gb|EAR28172.1| hypothetical protein PTD2_20192 [Pseudoalteromonas tunicata D2]
          Length = 413

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 133/322 (41%), Gaps = 44/322 (13%)

Query: 300 GDVGSGKTLVALIAMAAAVEAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            + G+GKT    + M   +  G        +A+++ P   LA Q  + ++ Y+++T I  
Sbjct: 45  ANTGTGKTAGFTLPMVQLLSGGAIAQPKSVRALVITPTRELAAQVAQNVQDYSRHTNISS 104

Query: 353 EIITGNM---PQAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQH 404
            ++ G +   PQ      + ++A G   +++ T         Q +I + +L L+++DE  
Sbjct: 105 AVVFGGVRIEPQ------IAQLATG-VDVLVATPGRLVDLYNQQAINFNQLELLVLDEAD 157

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           R      L L       H+   T  P  R  ++ S    D  K   K     P    + P
Sbjct: 158 RM-----LDLGFIDDIRHI--QTLLPSERQTLMFSATFSDEIKSLAKGMLNNPQLIEVSP 210

Query: 465 INR-IDEVIERL----KVVLSEG-----KKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           +N  +D V +++    K   SE      KK  W    +  + +    S+V + N+   + 
Sbjct: 211 VNSTVDTVKQKIYPVDKTRKSEALIYLLKKHQWRQVLVFSRTKQGADSLVTQLNNAGINS 270

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            S    IH   +   +   ++ FK+G  K+L+AT +   GIDV     +I  +  +    
Sbjct: 271 AS----IHANRTQHARTHALNGFKSGEIKVLVATDIASRGIDVNQLPCVINLDLPYVAED 326

Query: 575 QLHQLRGRVGRGEEISSCILLY 596
            +H++ GR GR       I L+
Sbjct: 327 YVHRI-GRTGRAGTAGLAISLF 347


>gi|254229148|ref|ZP_04922567.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262395499|ref|YP_003287352.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151938233|gb|EDN57072.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262339093|gb|ACY52887.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 419

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 150/358 (41%), Gaps = 62/358 (17%)

Query: 261 IAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           I QK++  +      +PT  QE +I  +L+    KN +L   Q   G+GKT    + +  
Sbjct: 10  IEQKLIETLSNLNIVTPTPVQEKSIPHVLEG---KN-LLAAAQ--TGTGKTAAFGLPIIQ 63

Query: 317 AVE-----AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            V+        QA+++ P   LAQQ ++ + +Y+  T++ +  + G      +++ LE  
Sbjct: 64  TVQQKKLNGTPQALVLVPTRELAQQVFDNLNQYSAQTELRIVCVYGGTSIGVQKRKLEE- 122

Query: 372 AHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAP 421
               A I+I T       LF  ++   K  ++++DE  R    G    L+    +     
Sbjct: 123 ---GADILIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPAEK 179

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +LL +AT   R   +         K+ E P     ++  + P N   E ++++   + +
Sbjct: 180 QILLFSATFEKRIKTIAY-------KLMESP-----VEVEVSPANTTAETVKQMVYPVDK 227

Query: 482 GKK----AYWICPQIEEKKESNFRSVV--ERFNSLHEHFTSSIAI-------IHGRMSDI 528
            +K    AY I  +       N++ V+   +     +     + +       I+G  S  
Sbjct: 228 KRKRELLAYLIGSR-------NWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQG 280

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            ++  +D FK G  + LIAT V   G+D+ +   ++  +        +H++ GR GR 
Sbjct: 281 ARQRALDEFKQGKVRALIATDVAARGLDIQELEQVVNFDMPFKAEDYVHRI-GRTGRA 337


>gi|227518643|ref|ZP_03948692.1| ATP-dependent RNA helicase [Enterococcus faecalis TX0104]
 gi|227553173|ref|ZP_03983222.1| ATP-dependent RNA helicase [Enterococcus faecalis HH22]
 gi|227073900|gb|EEI11863.1| ATP-dependent RNA helicase [Enterococcus faecalis TX0104]
 gi|227177699|gb|EEI58671.1| ATP-dependent RNA helicase [Enterococcus faecalis HH22]
 gi|315575567|gb|EFU87758.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
 gi|315579991|gb|EFU92182.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
          Length = 452

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 145/346 (41%), Gaps = 41/346 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT+ QE  I  I +  S       I Q   GSGKT   L+ +   V+      Q VI AP
Sbjct: 28  PTEVQEKLIPIIKKGKSV------IGQSQTGSGKTHTFLLPLMDKVKPTIDEVQIVITAP 81

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGN-MPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q Y+  ++  + +Q   EI   N +    +++ L ++ H Q H++IGT     D
Sbjct: 82  SRELANQIYQEAQQLARFSQ--PEIRVSNFVGGTDKQRQLNKLKHQQPHVVIGTPGRILD 139

Query: 389 -----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
                +++ +     +VDE         L +   A    +    A  +P  L +      
Sbjct: 140 MMNEQALKVHTAFAFVVDE-----ADMTLDMGFLAEVDQI----AGRLPEKLQMLVFSAT 190

Query: 444 DISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              K+  +P  +K    P+   I P   I E I+   ++ ++GK +  I  Q+       
Sbjct: 191 IPEKL--RPFLKKYLENPVIEHIKPKAVISETIDNW-LISTKGKNSNKIIYQLLTIGHPY 247

Query: 500 ----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F +  +R + + ++       +A IHG ++  +++ VM   +N   + ++AT +  
Sbjct: 248 LAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAA 307

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            GID+   S +I     H     +H++ GR GR     + I LY P
Sbjct: 308 RGIDIEGVSHVINAEVPHELDFFIHRV-GRTGRNGLNGTAITLYSP 352


>gi|168462889|ref|ZP_02696820.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195634348|gb|EDX52700.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 457

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 137/326 (42%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI------ 399
              + G  P   +R +L+       HII+ T     D +Q   +      ILV+      
Sbjct: 105 T--LCGGQPFGAQRDSLQH----APHIIVATPGRLLDHLQKETVSLDALHILVMDEADRM 158

Query: 400 --------VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                   +DE  RF    R  L   AT P  +   +  + +  +      I+I  +   
Sbjct: 159 LDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPI-----RIEIDTVDAL 213

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           PA  +             E I  L+ +LS+ + A  +   +    + + ++V +  N++ 
Sbjct: 214 PAIEQQFFE-----TSAHEKISLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALNAVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 Q---SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELVVNYELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFC 345


>gi|153806718|ref|ZP_01959386.1| hypothetical protein BACCAC_00989 [Bacteroides caccae ATCC 43185]
 gi|149131395|gb|EDM22601.1| hypothetical protein BACCAC_00989 [Bacteroides caccae ATCC 43185]
          Length = 444

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 143/366 (39%), Gaps = 60/366 (16%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV- 318
           +I Q +LRN+        + A    L+  + K  +  IL    GSGKTL  L+ +   + 
Sbjct: 6   EIIQSVLRNLRIEELNPMQEAS---LEQATGKKDV--ILLSPTGSGKTLAYLLPLLLTLK 60

Query: 319 --EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
             +   Q +I+ P   LA Q     K     T        G  P A  +K+   I     
Sbjct: 61  TDDGSVQVLILVPSRELALQIDSVFK--AMGTSWKTCCCYGGHPIAEEKKS---ILGNHP 115

Query: 377 HIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLM 426
            IIIGT     D +          + LI+   D+   FG    +   +TQ       +L+
Sbjct: 116 AIIIGTPGRITDHLSKGNFNPETIHTLIIDEFDKSLEFGFHDEMAEIITQLPGLKKRMLL 175

Query: 427 TATP---IP------RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-NRIDEVIERLK 476
           +AT    IP      RT+ L  L D      +E+   R  +  VI P  ++ID +   L 
Sbjct: 176 SATDAEEIPQFTGLNRTVKLNFLPDA-----SEEQESRLTLMKVISPSKDKIDTLYNLLC 230

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            + S     +            N R  V+R + L           HG M   D+E  +  
Sbjct: 231 TLGSSSSIVF-----------CNHRDAVDRVHKLLAEKKLFAERFHGGMEQPDRERALYK 279

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQLHQLRGRVGRGEEISS 591
           F+NG+C +LI+T +   G+D+ +     IE+  H+ L     A  H+  GR  R +   +
Sbjct: 280 FRNGSCHVLISTDLAARGLDIPE-----IEHIIHYHLPVNEEAFTHR-NGRTARWDATGT 333

Query: 592 CILLYH 597
             L+ H
Sbjct: 334 SYLVLH 339


>gi|145300478|ref|YP_001143319.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853250|gb|ABO91571.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 417

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 130/297 (43%), Gaps = 43/297 (14%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LA Q ++ + +Y Q T +   ++ G +  A + +AL+        ++I T
Sbjct: 79  RALVLVPTRELAVQVFDSVVRYGQGTGLTSALVYGGVSIAAQVEALQ----AGVDLLIAT 134

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIPR- 433
                D ++   L L     ++ DE  R    G    +K           L+   P  R 
Sbjct: 135 PGRLLDHLRQGALSLEHLSHLVFDEADRMLDMGFMDEIKA----------LLKQIPADRQ 184

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKVVLSEGKKAY------ 486
           TL+ ++  D ++  ++ +   R P    + P N    EV +R+  V  E K A       
Sbjct: 185 TLLFSATCDDNLFALS-RVLLRDPELIEVAPRNTTAAEVEQRVYAVDGERKVALVEHLIK 243

Query: 487 ---WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
              W    I  +       + ++   L +   +++A  HG +S   +E V+ +F+ GT +
Sbjct: 244 VKGWAPVLIFSRTRQGADKLAQQ---LGKAGINALAF-HGDLSQGAREKVLLAFRAGTLQ 299

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQ--LHQLRGRVGRGEEISSCILLYHP 598
            L+AT V   G+D++D + +I  N E   +A+  +H++ GR GR       I L+ P
Sbjct: 300 ALVATDVAARGLDILDLNYVI--NLEFPFVAEDYVHRI-GRTGRAGNKGLAITLFSP 353


>gi|124506009|ref|XP_001351602.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
 gi|23504529|emb|CAD51409.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
 gi|156072126|gb|ABU45414.1| DEAD-box helicase 5 [Plasmodium falciparum]
          Length = 755

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S A++HG ++   +E  M  F+ G  ++LIAT +   G+D+ +  ++I     ++    +
Sbjct: 458 SFAVLHGNIAQSTREYTMQRFRQGMFQILIATDIASRGLDISNVDLVIQCFPPNYSAVYI 517

Query: 577 HQLRGRVGRGEEISSCILLY 596
           H+  GR GR  +  + ++LY
Sbjct: 518 HRA-GRTGRANKKGTSLVLY 536


>gi|68070111|ref|XP_676967.1| ATP-dependent RNA helicase [Plasmodium berghei strain ANKA]
 gi|56496896|emb|CAH98719.1| ATP-dependent RNA helicase, putative [Plasmodium berghei]
          Length = 715

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 119/289 (41%), Gaps = 30/289 (10%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   L  Q    IK +     +    + G +P+  +   +  I  G A II+ T 
Sbjct: 403 GLILLPTRELCMQVLNEIKNFESELNLKAVAVYGGVPKYFQ---INNIKKG-ADIIVATP 458

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTAT-PIP 432
               D      I   + I V++DE  R    G +++L+  +TQ      +L +TAT P  
Sbjct: 459 GRLLDYLENGIINLLRCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPEQ 518

Query: 433 RTLVLTSLGDIDISKI----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYW 487
              +       D  KI    +E  A +   + VI+  +   +      +  + E  K   
Sbjct: 519 VRKLAYDFCSFDPVKIQIGKSELTANKNIEQQVIVSSSIDLKKKLLDWLKDNYENNKILI 578

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C           R+       L  H  +S++I HG     +++ +++++KN  C +L+A
Sbjct: 579 FCDTK--------RNCDNLCKELRYHQYNSLSI-HGDKQQRERDRILNNYKNDRCNILVA 629

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           T V   G+D+ + SI+I  +  +     +H++ GR GR       IL +
Sbjct: 630 TDVASRGLDIKNISIVINYDIPNTIEDYIHRI-GRTGRAGNKGQSILFF 677


>gi|24644479|ref|NP_524243.2| Rm62, isoform A [Drosophila melanogaster]
 gi|30923187|sp|P19109|DDX17_DROME RecName: Full=ATP-dependent RNA helicase p62
 gi|23175945|gb|AAG22213.2| Rm62, isoform A [Drosophila melanogaster]
 gi|41058179|gb|AAR99134.1| RE11923p [Drosophila melanogaster]
          Length = 719

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 145/354 (40%), Gaps = 47/354 (13%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  ++ +   
Sbjct: 327 TGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNT 386

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G  P+  + + L+R       I+I T     D     S    +   +++DE  R   
Sbjct: 387 CVFGGAPKGGQMRDLQR----GCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLD 442

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGD-IDISKITEKPAGRKPIK 459
             F  Q R  ++Q       L+ +AT  P+    L    LG+ I I+  + + +    I+
Sbjct: 443 MGFEPQIRKIVSQIRPDRQTLMWSAT-WPKEVKQLAEDFLGNYIQINIGSLELSANHNIR 501

Query: 460 TVIIPINRIDEVIERLKVVLSE----GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            V+   +   +  E+LK +LS+     +    I   +E K+       V+        F 
Sbjct: 502 QVVDVCDEFSKE-EKLKTLLSDIYDTSESPGKIIIFVETKRR------VDNLVRFIRSFG 554

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHF 571
                IHG  S  +++ V+  F++G   +L+AT V   G+DV     +I     +N+E +
Sbjct: 555 VRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDY 614

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
               +H++ GR GR     +    +    +K +   + VL+        A E+L
Sbjct: 615 ----IHRI-GRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENL 663


>gi|8444|emb|CAA37037.1| unnamed protein product [Drosophila melanogaster]
          Length = 575

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 145/354 (40%), Gaps = 47/354 (13%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  ++ +   
Sbjct: 183 TGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNT 242

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G  P+  + + L+R       I+I T     D     S    +   +++DE  R   
Sbjct: 243 CVFGGAPKGGQMRDLQR----GCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLD 298

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGD-IDISKITEKPAGRKPIK 459
             F  Q R  ++Q       L+ +AT  P+    L    LG+ I I+  + + +    I+
Sbjct: 299 MGFEPQIRKIVSQIRPDRQTLMWSAT-WPKEVKQLAEDFLGNYIQINIGSLELSANHNIR 357

Query: 460 TVIIPINRIDEVIERLKVVLSE----GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            V+   +   +  E+LK +LS+     +    I   +E K+       V+        F 
Sbjct: 358 QVVDVCDEFSKE-EKLKTLLSDIYDTSESPGKIIIFVETKRR------VDNLVRFIRSFG 410

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHF 571
                IHG  S  +++ V+  F++G   +L+AT V   G+DV     +I     +N+E +
Sbjct: 411 VRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDY 470

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
               +H++ GR GR     +    +    +K +   + VL+        A E+L
Sbjct: 471 ----IHRI-GRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENL 519


>gi|66802840|ref|XP_635263.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
 gi|60463423|gb|EAL61608.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
          Length = 2403

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 6/103 (5%)

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE---SVMDSFKNGTCKLLIATTVIEVG 554
           SN  S++++     E+  +   + H     +D E   S++  F++G C+L++ T V+E G
Sbjct: 656 SNLTSMLKK-EPFQEYLHTKRLVGHNGDDGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEG 714

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           IDV D +I+I  +     L  L Q RGR  R +  S  I++Y+
Sbjct: 715 IDVQDCNIVICYDG-ILSLKSLIQRRGR-ARSKNESKFIIIYN 755


>gi|332194953|gb|AEE33074.1| translation initiation factor 4A-2 [Arabidopsis thaliana]
          Length = 407

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 124/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 75  IQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVH 134

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D I+ +  +L   DE 
Sbjct: 135 ACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMF--VLDEADEM 188

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++    +   P   V + +AT  P  L +T        K   KP        V
Sbjct: 189 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMSKP--------V 233

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 234 RILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 293

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 294 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQ 353

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 354 PENYLHRI-GRSGR 366


>gi|254689957|ref|ZP_05153211.1| primosome assembly protein PriA [Brucella abortus bv. 6 str. 870]
 gi|256258212|ref|ZP_05463748.1| primosome assembly protein PriA [Brucella abortus bv. 9 str. C68]
 gi|260755492|ref|ZP_05867840.1| primosome assembly protein PriA [Brucella abortus bv. 6 str. 870]
 gi|260884513|ref|ZP_05896127.1| primosome assembly protein PriA [Brucella abortus bv. 9 str. C68]
 gi|297249061|ref|ZP_06932769.1| primosomal protein [Brucella abortus bv. 5 str. B3196]
 gi|260675600|gb|EEX62421.1| primosome assembly protein PriA [Brucella abortus bv. 6 str. 870]
 gi|260874041|gb|EEX81110.1| primosome assembly protein PriA [Brucella abortus bv. 9 str. C68]
 gi|297174194|gb|EFH33551.1| primosomal protein [Brucella abortus bv. 5 str. B3196]
          Length = 744

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 7/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           ++ Q++A + + + +      + +L G  GSGKT V   A+A A++AG Q +I+ P   L
Sbjct: 212 SQDQQAAAEMLSEAVEAGGFSVSLLDGVTGSGKTEVYFEAVAKALDAGRQVLILLPEIAL 271

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            QQ   F+ ++             ++    R +   ++A G   ++ G   ALF   + +
Sbjct: 272 TQQ---FLDRFHDRFGAKPAEWHSDLAPRTRERVWRQVAEGTVRVVAGARSALF---LPF 325

Query: 393 YKLILVIVDEQHRFGVQQ 410
            +L L++VDE+H    +Q
Sbjct: 326 KELGLIVVDEEHDPAYKQ 343


>gi|227204273|dbj|BAH56988.1| AT3G13920 [Arabidopsis thaliana]
          Length = 398

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 125/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 80  IQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 139

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 140 ACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMF--VLDEADEM 193

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++    +   P   V + +AT  P  L +T        K   KP        V
Sbjct: 194 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMSKP--------V 238

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 239 RILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 298

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 299 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQ 358

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 359 PENYLHRI-GRSGR 371


>gi|225555683|gb|EEH03974.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus G186AR]
          Length = 544

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/346 (20%), Positives = 147/346 (42%), Gaps = 50/346 (14%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +++AP   LA Q    I K+ ++++I  
Sbjct: 171 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRN 230

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G +P+  + + L R       + I T     D ++  K  L     +++DE  R  
Sbjct: 231 TCVYGGVPKGPQIRDLTR----GVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRML 286

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
              F  Q R  ++Q           AT P  +   A       +  ++G +D+S   +IT
Sbjct: 287 DMGFEPQIRKIVSQIRPDRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRIT 346

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +       I  ++    + D + + L  ++ + K +  +     ++   +    + RF  
Sbjct: 347 Q-------IVEIVSEFEKRDRMAKHLDRIMEDNKHSKVLIFTGTKRVADD----ITRF-- 393

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D + ++  +  
Sbjct: 394 LRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYP 452

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +     +H++ GR GR     + I L+    +K +   +++L  ++
Sbjct: 453 NNSEDYVHRI-GRTGRAGAKGTAITLFTTDNAKQARDLVAILSESK 497


>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
          Length = 397

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 121/295 (41%), Gaps = 47/295 (15%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQ-AHRRKALERIAHGQAHI 378
           +A+I+ P   LA Q    +  Y ++T +   ++ G +   PQ A  R+ +E        I
Sbjct: 89  RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVE--------I 140

Query: 379 IIGTHALFQDSIQYY-----KLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLM 426
           +I T     D +Q       ++ ++++DE  R         +Q+ L L  K     +   
Sbjct: 141 LIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSA 200

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKA 485
           T +P  + L  T L D    ++    A    +  ++  +   D+    +K++     K+ 
Sbjct: 201 TFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQV 260

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              C         N +    R     E      A IHG  S  ++   +D+FK G  + L
Sbjct: 261 IVFC---------NSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEAL 311

Query: 546 IATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           +AT V   G+D+V+   +I      NAE +    +H++ GR GR    G+ +S C
Sbjct: 312 VATDVAARGLDIVELPAVINFDLPFNAEDY----VHRI-GRTGRAGASGDALSLC 361


>gi|11890755|gb|AAF78930.2|AAF78930 RNA helicase II/Gu protein [Homo sapiens]
          Length = 715

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 136/335 (40%), Gaps = 53/335 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   +             Q +++AP   L  Q  +     T+ 
Sbjct: 159 IAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELCNQVSKDFSDITK- 217

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +    ER+ +G   I++GT    +D IQ  KL L     V++DE
Sbjct: 218 -KLSVACFYGGTPYGGQ---FERMRNG-IDILVGTPGRIKDHIQNGKLDLTKLKHVVLDE 272

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTATP------IPRTLVLTSLGDID-I 445
             +         V++ L +  K  +   P  LL +AT       + +  + ++   +D I
Sbjct: 273 VDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 332

Query: 446 SKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
            K T+K A    ++ + I  +   R   + + ++V      +    C   +E +E +  S
Sbjct: 333 GKKTQKTA--ITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 390

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +++              +HG +    +E  +  F+NG+  +L+AT V   G+D+ +  +
Sbjct: 391 AIKQ----------DAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDL 440

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +I  +      + +H+  GR GR      CI  Y 
Sbjct: 441 VIQSSPPKDVESYIHR-SGRTGRAGRTGVCICFYQ 474


>gi|73969107|ref|XP_531736.2| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 1 [Canis
           familiaris]
          Length = 664

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 143/350 (40%), Gaps = 39/350 (11%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 132 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 189

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 245

Query: 401 DEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEK- 451
           DE  R     F  Q R  + Q         ++  P P   +TL+ ++    ++ ++ E  
Sbjct: 246 DEADRMLDMGFEPQIRKIVDQIRVCKTDDTLSLFPFPPDRQTLMWSATWPKEVRQLAEDF 305

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KKESN---FRSVVE 505
                 I    + ++    +++ + V + E +K + +   +EE   +KE+    F     
Sbjct: 306 LRDYTQINVGNLELSANHNILQIVDVCM-ESEKDHKLIQLMEEIMAEKENKTIIFVETKR 364

Query: 506 RFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           R + L             IHG  S  +++ V++ F++G   +LIAT V   G+DV D   
Sbjct: 365 RCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKF 424

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 425 VINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 473


>gi|42781255|ref|NP_978502.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42737177|gb|AAS41110.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 389

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 153/355 (43%), Gaps = 47/355 (13%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQG-DV------GSGKTLVALIAMAAAVE--- 319
           PF     +++  K++ +   QK  +  IL+G DV      G+GKTL  L+ +   +    
Sbjct: 7   PFXQQAWEKAGFKELTE--IQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINPEV 64

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q V++AP   L  Q +E ++K+T  T+I    + G    A  ++ +E++      +I
Sbjct: 65  KQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGG---ADIKRQVEKLKK-HPRVI 120

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           +G+     + I+  KL +     ++ DE  +   Q+ +   Q        ++ +T   R 
Sbjct: 121 VGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQD-------VIKSTMRDRQ 173

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWI--CP 490
           LV  S     ++K  E  A    ++  ++ + R +   ++E   ++    +K  ++    
Sbjct: 174 LVFFS---ATMTKAAEDAARDLAVEPQLVRVTRAESKSLVEHTYIICERREKNDYVRRIM 230

Query: 491 QIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            + + K   F +   R + + E         A +H   S  ++E+ M +F+ G  ++L+A
Sbjct: 231 HMGDVKAVAFLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLA 290

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLA----QLHQLRGRVGRGEEISSCILLYHP 598
           T +   GID+ D + +I     H  L     Q     GR GR  +  + + L  P
Sbjct: 291 TDIAARGIDIDDLTHVI-----HLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTP 340


>gi|82539875|ref|XP_724294.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478891|gb|EAA15859.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
          Length = 715

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 119/289 (41%), Gaps = 30/289 (10%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   L  Q    IK +     +    + G +P+  +   +  I  G A II+ T 
Sbjct: 403 GLILLPTRELCMQVLNEIKNFESELNLKAVAVYGGVPKYFQ---INNIKKG-ADIIVATP 458

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTAT-PIP 432
               D      I   + I V++DE  R    G +++L+  +TQ      +L +TAT P  
Sbjct: 459 GRLLDYLENGIINLLRCIYVVIDEADRLLDMGFEKQLRKIMTQINKNKQLLFLTATWPEQ 518

Query: 433 RTLVLTSLGDIDISKI----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYW 487
              +       D  KI    +E  A +   + VI+  +   +      +  + E  K   
Sbjct: 519 VRKLAYDFCSFDPVKIQIGKSELTANKNIEQQVIVSSSIDLKKKLLDWLKDNYENNKILI 578

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C           R+       L  H  +S++I HG     +++ +++++KN  C +L+A
Sbjct: 579 FCDTK--------RNCDNLCKELRYHQYNSLSI-HGDKQQRERDRILNNYKNDRCNILVA 629

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           T V   G+D+ + SI+I  +  +     +H++ GR GR       IL +
Sbjct: 630 TDVASRGLDIKNISIVINYDIPNTIEDYIHRI-GRTGRAGNKGKSILFF 677


>gi|306841517|ref|ZP_07474216.1| primosomal protein N'' [Brucella sp. BO2]
 gi|306288428|gb|EFM59785.1| primosomal protein N'' [Brucella sp. BO2]
          Length = 691

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 24/184 (13%)

Query: 239 ALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSP----------------TKSQESAI 281
            L   R       G+ + V +G  AQ I   I   P                ++ Q++A 
Sbjct: 107 GLAWTRSGLAHAAGVSLTVVDGLKAQGIFEEIMLPPPAVVAKPDTDYARATLSQDQQAAA 166

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           + + + +      + +L G  GSGKT V   A+A A++AG Q +I+ P   L QQ   F+
Sbjct: 167 EMLSEAVEAGGFSVSLLDGVTGSGKTEVYFEAVAKALDAGRQVLILLPEIALTQQ---FL 223

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIV 400
            ++             ++    R +   ++A G   ++ G   ALF   + + +L L++V
Sbjct: 224 DRFHDRFGAKPAEWHSDLAPRTRERVWRQVAEGTVRVVAGARSALF---LPFKELGLIVV 280

Query: 401 DEQH 404
           DE+H
Sbjct: 281 DEEH 284


>gi|306844784|ref|ZP_07477369.1| primosomal protein N'' [Brucella sp. BO1]
 gi|306274956|gb|EFM56726.1| primosomal protein N'' [Brucella sp. BO1]
          Length = 744

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 7/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           ++ Q++A + + + +      + +L G  GSGKT V   A+A A++AG Q +I+ P   L
Sbjct: 212 SQDQQAAAEMLSEAVEAGGFSVSLLDGVTGSGKTEVYFEAVAKALDAGRQVLILLPEIAL 271

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            QQ   F+ ++             ++    R +   ++A G   ++ G   ALF   + +
Sbjct: 272 TQQ---FLDRFHDRFGAKPAEWHSDLAPRTRERVWRQVAEGTVRVVAGARSALF---LPF 325

Query: 393 YKLILVIVDEQHRFGVQQ 410
            +L L++VDE+H    +Q
Sbjct: 326 KELGLIVVDEEHDPAYKQ 343


>gi|229087937|ref|ZP_04220048.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-44]
 gi|228695405|gb|EEL48279.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-44]
          Length = 481

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 135/323 (41%), Gaps = 40/323 (12%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+I+ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALILTPTRELAAQVKEDITNIGRFKRIKAT 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR--- 405
            I G  P A ++  L++    + HI++GT     D I+       +L  +++DE      
Sbjct: 105 AIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTAT------PIPRTLVLTSLG-DIDISKITEKPAGRK 456
             F  Q    + +  T    +L +AT       + RT + + +  +I  S IT       
Sbjct: 161 MGFIDQVEAIIDELPTNRMTMLFSATLPEDVENLSRTYMESPINIEITASGIT-----TD 215

Query: 457 PIKTVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            I+  I+ + R +E    LK + + E   +  I  + +E  +  FR +        +  +
Sbjct: 216 KIEHRILEV-REEEKFSLLKDITTVESPDSCIIFCRTQENVDHVFRQL--------KRSS 266

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
                +HG M   D+ +VM+ FK G  + L+AT V   GID+ + + +I  +      + 
Sbjct: 267 YPCDKLHGGMIQEDRFAVMNDFKRGKFRYLVATDVAARGIDIENITHVINYDIPLEKESY 326

Query: 576 LHQLRGRVGRGEEISSCILLYHP 598
           +H+  GR GR       I    P
Sbjct: 327 VHRT-GRTGRAGNSGKAITFITP 348


>gi|218689333|ref|YP_002397545.1| ATP-dependent RNA helicase DbpA [Escherichia coli ED1a]
 gi|218426897|emb|CAR07752.2| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           ED1a]
          Length = 457

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 127/326 (38%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEINSTDALPPIEQ 218

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                  K  I  + R+        + L +       C       + + +SV +  N + 
Sbjct: 219 QFYETSSKGKIPLLQRL--------LSLHQPSSCVVFC-----NTKKDCQSVCDALNEVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S    +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 QSALS----LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELVVNFELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|261405797|ref|YP_003242038.1| primosomal protein N' [Paenibacillus sp. Y412MC10]
 gi|261282260|gb|ACX64231.1| primosomal protein N' [Paenibacillus sp. Y412MC10]
          Length = 842

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 27/179 (15%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P + T  Q++  + I++ + ++     +L G  GSGKT + L  +   ++   QA+++
Sbjct: 282 SAPLALTPEQQAVYRSIVRKLDERKHGAFLLHGVTGSGKTEIYLQTIQRCMDQERQAIVL 341

Query: 328 AP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-AL 385
            P I +  Q    F  ++       V ++   +    R     +I  G+A +++G   A+
Sbjct: 342 VPEISLTPQMVERFKARFGDR----VAVMHSRLSDGERYDEWRKIREGRASVVVGARSAV 397

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQ--------------RLKLTQKATAPHVLLMTATP 430
           F     + +L L+I+DE+H    +Q              R  LT  A    V+L +ATP
Sbjct: 398 F---APFDRLGLIIMDEEHESSYKQEETPKYHARDVAIHRASLTGAA----VILGSATP 449


>gi|156395780|ref|XP_001637288.1| predicted protein [Nematostella vectensis]
 gi|156224399|gb|EDO45225.1| predicted protein [Nematostella vectensis]
          Length = 412

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 129/325 (39%), Gaps = 62/325 (19%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------GQ 323
           P+  Q+ AI+   Q          I Q   G+GKT    I++   ++            Q
Sbjct: 56  PSAIQQRAIRPCCQARDV------IAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQ 109

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  + +        +      G       R  LE       H+++GT 
Sbjct: 110 ALVLAPTRELAQQIQKVVLALGDYMHVKCHACIGGTNVREDRMKLEE----GVHVVVGTP 165

Query: 384 ALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPR 433
               D I    L        +L   DE    G + ++    T+  T+  V+L++AT    
Sbjct: 166 GRVFDMINRGVLNTRDIKLFVLDEADEMLSRGFKDQIYDVFTRLPTSVQVVLLSATMPTD 225

Query: 434 TLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVL 479
            L +T+    D+ +I  K      + IK   + + + D  ++ L             +  
Sbjct: 226 VLEVTNKFMRDVVRILVKREEVTLEGIKQFFVLVEKEDWKLDTLCDLYETLTITQAVIFA 285

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +  +K  W+  ++ EK                +H  SS+   HG MS  +++ +M  F++
Sbjct: 286 NTRRKVDWLAAKMTEK----------------DHTVSSM---HGDMSQKERDIIMKEFRS 326

Query: 540 GTCKLLIATTVIEVGIDVVDASIII 564
           G+ ++LI T ++  GIDV   S++I
Sbjct: 327 GSSRVLITTDLLARGIDVHQVSLVI 351


>gi|126178370|ref|YP_001046335.1| DEAD/DEAH box helicase domain-containing protein [Methanoculleus
           marisnigri JR1]
 gi|125861164|gb|ABN56353.1| DEAD/DEAH box helicase domain protein [Methanoculleus marisnigri
           JR1]
          Length = 669

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 77/376 (20%), Positives = 160/376 (42%), Gaps = 55/376 (14%)

Query: 268 NIPFSPTKSQESAIKDIL--QDMSQKNRMLR----ILQGDVGSGKTLVALIA-MAAAVEA 320
           ++P  P  ++ + ++ ++  Q ++ +N +L     ++     SGKT +  +A M   +E 
Sbjct: 191 DLPLPPAFAKAAGVEYLMPVQQLAVQNGLLEGQHLLVVSATASGKTFIGEMAGMKNFLEG 250

Query: 321 GGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G+ + + P+  LA Q Y+ F  +Y    ++ ++     +     R A +R  +  A ++
Sbjct: 251 RGRTLFLVPLVALANQKYQRFRDRYGHLVRVTLQTGVSRLNLPETRPAGDRDVN--APVV 308

Query: 380 IGTHALFQDSIQYYKLI----LVIVDE---------QHRF-GVQQRLKLTQKATAPHVLL 425
           +GT+     +++  + +     V++DE          HR  G+  RLK    A     L 
Sbjct: 309 VGTYEGIDHALRTGRSVKDIGTVVIDEVQMLEDPERGHRLDGLIARLK--HIAPEAQFLY 366

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV-------IERLKVV 478
           ++AT     L+   L   ++ +  ++P    P++  +I I R  ++        E  KV 
Sbjct: 367 LSATIGAPGLLAEKL-RANLVRYADRPV---PLERHLIFIERNKKIGFIKQMAAEEYKVR 422

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            S+G +   I           F +   R + + +   +  A  H  ++  ++  V   F 
Sbjct: 423 SSKGYRGQTIV----------FTNSRARCHVIADALGTKAAPYHAGLTSQERRDVERRFT 472

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENA---EHFGLAQLHQLRGRVGRGE--EISSCI 593
           NG    ++ T  +  G+D   + +I    A   +   + + HQ+ GR GR +  ++   +
Sbjct: 473 NGEISAVVTTAALAAGVDFPASQVIFDALAMGIQWLTVQEFHQMMGRAGRPDFHDLGRVV 532

Query: 594 LLYHPPLSKNSYTRLS 609
           +L  P     SY+R S
Sbjct: 533 ILAEP---GGSYSRTS 545


>gi|23502657|ref|NP_698784.1| primosome assembly protein PriA [Brucella suis 1330]
 gi|23348665|gb|AAN30699.1| primosomal protein N [Brucella suis 1330]
          Length = 744

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 7/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           ++ Q++A + + + +      + +L G  GSGKT V   A+A A++AG Q +I+ P   L
Sbjct: 212 SQDQQAAAEMLSEAVEAGGFSVSLLDGVTGSGKTEVYFEAVAKALDAGRQVLILLPEIAL 271

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            QQ   F+ ++             ++    R +   ++A G   ++ G   ALF   + +
Sbjct: 272 TQQ---FLDRFHDRFGAKPAEWHSDLAPRTRERVWRQVAEGTVRVVAGARSALF---LPF 325

Query: 393 YKLILVIVDEQHRFGVQQ 410
            +L L++VDE+H    +Q
Sbjct: 326 KELGLIVVDEEHDPAYKQ 343


>gi|109896916|ref|YP_660171.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas atlantica T6c]
 gi|109699197|gb|ABG39117.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas atlantica T6c]
          Length = 459

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 145/357 (40%), Gaps = 56/357 (15%)

Query: 278 ESAIKDILQDMS-------QKNRMLRILQG-DV------GSGKTLVALIAMAAAVEAGG- 322
           E+A+ D LQ M        Q   +  IL+G DV      GSGKT    +A+   ++    
Sbjct: 11  EAALLDNLQSMGFSQMTEIQAGTLPAILEGRDVVAKAKTGSGKTAAFGLALLHNLDVKRF 70

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHII 379
             QA++M P   LA+Q    I++  +    I V  + G  P   +  +LE   HG AHII
Sbjct: 71  RVQALVMCPTRELAEQVALEIRRLGRGIHNIKVLTLCGGTPMGPQIGSLE---HG-AHII 126

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATAPH--VLLMTAT 429
           +GT     D +   +L L     +++DE  R    G +  +    K+       LL +AT
Sbjct: 127 VGTPGRIMDHLYKRRLDLSEVNTLVLDEADRMLDMGFEDEMDAVIKSVPEQRQTLLFSAT 186

Query: 430 PIPRTLVLTSLGDIDISKI---TEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-----E 481
             P ++   S G +  S +    E       I+ V   +    E   R K V +     +
Sbjct: 187 -YPDSIAAIS-GQVQKSPLEVTVESTHDTDTIEQVFFEV----EDAHRTKAVAALLSHYQ 240

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            + A   C         N +   +      +    S+  +HG +   ++  V+  F N +
Sbjct: 241 PESAIVFC---------NTKIACQEVADELQSMGVSVLALHGDLEQRERNQVLVRFANKS 291

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             +L+AT V   G+D+ + + +I  +        +H++ GR GR E     + L  P
Sbjct: 292 ASVLVATDVASRGLDIKEVNAVISYHITPDPEVHIHRI-GRTGRAESKGVALTLVAP 347


>gi|332641920|gb|AEE75441.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 407

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 125/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 75  IQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 134

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 135 ACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMF--VLDEADEM 188

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++    +   P   V + +AT  P  L +T        K   KP        V
Sbjct: 189 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMSKP--------V 233

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 234 RILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 293

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 294 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQ 353

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 354 PENYLHRI-GRSGR 366


>gi|327296165|ref|XP_003232777.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           rubrum CBS 118892]
 gi|326465088|gb|EGD90541.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           rubrum CBS 118892]
          Length = 811

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 133/332 (40%), Gaps = 57/332 (17%)

Query: 302 VGSGKTLVALIAMAAAVEA-------------GGQAVIMAPIGILAQQ-HYEFIKKYTQN 347
            GSGKT   L+ +   + +             G  A+I+AP   LAQQ   E +K     
Sbjct: 414 TGSGKTAAFLLPLLVYISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPL 473

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHG---QAHIIIGTHALFQDSIQYYKLIL-----VI 399
              +V I+ G+        +LE  A+     A III T     D I+   L+L     VI
Sbjct: 474 NFNVVSIVGGH--------SLEEQAYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVI 525

Query: 400 VDEQHR---FGVQQRL----------------KLTQKATAPHVLLMTATPIPRTLVLTSL 440
           +DE  R    G ++ +                +  + A A    +       +T++ T+ 
Sbjct: 526 MDEADRMIDLGFEEPVNKILDALPVSNEKPDSEEAENAQAMSQHIGGKDRYRQTMMYTAT 585

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
               + +I  K   R  I T+      +D V +R++ V  E K+   +   +  ++    
Sbjct: 586 MPSAVERIARKYLRRPAIVTIGNIGEAVDTVEQRVEFVSGEDKRKKRLAEILTSREYRPP 645

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N +   +      +H   S   +HG  +   +E+ + S +NG+  +L+AT +   
Sbjct: 646 IIVFVNIKRNCDAVARDIKHMGFSAVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGR 705

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           GIDV D S+++  N      +  H++ GR GR
Sbjct: 706 GIDVPDVSLVVNFNMATNIESYTHRI-GRTGR 736


>gi|322712791|gb|EFZ04364.1| eukaryotic initiation factor 4A-12 [Metarhizium anisopliae ARSEF
           23]
          Length = 402

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 138/341 (40%), Gaps = 57/341 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q  AI  + +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 50  SPSAVQSRAIVQVCKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 103

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + + ++ +GQ HI+ GT     D
Sbjct: 104 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVG---EDIRKLDYGQ-HIVSGTPGRVAD 159

Query: 389 SIQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L      ++++DE       G ++++    +   P   V++++AT     L +T
Sbjct: 160 MIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMT 219

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +       K    P        V I + R +  +E LK      +K  W    + +  ++
Sbjct: 220 T-------KFMTDP--------VRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDT 264

Query: 499 ----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T
Sbjct: 265 LTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLIST 324

Query: 549 TVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 325 DVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 360


>gi|293628906|dbj|BAJ04860.1| vasa homolog [Cynops pyrrhogaster]
          Length = 717

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 147/346 (42%), Gaps = 55/346 (15%)

Query: 302 VGSGKTLVALIAMAAAVEAGG-----------QAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            GSGKT   L+ + A +   G           +A+I+AP   L  Q +   +K+   T I
Sbjct: 321 TGSGKTAAFLLPILAHMMQDGVAPHSLDLQEPEAIIVAPTRELINQIFLDARKFAYGTCI 380

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
              ++ G     H   +L +I  G  +I+  T     D I+  K+ L     +++DE  R
Sbjct: 381 KPVVVYGGTQTFH---SLRQIYQG-CNILCATPGRLLDIIRREKIGLAKLRYLVLDEADR 436

Query: 406 -----FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTS---LGDIDISKITEKPA 453
                FG   ++ +T            L+ +AT   R   L       D     + +   
Sbjct: 437 MLDMGFGPDMKILITSPGMPSKEERQTLMFSATFPERIQSLAKEFLKSDYLFVVVGQVGG 496

Query: 454 GRKPIKTVIIPIN---RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
               ++ +IIP+    + D+++E L+ + +E    +     ++ KK++++ + +      
Sbjct: 497 ACSDVEQIIIPVGQHGKKDKLVEILQGLGTERTMVF-----VKTKKKADYLTTL----LC 547

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----E 566
            E+  ++   IHG     ++E  +  F+ G C +L+AT V   G+D+ +   +II    +
Sbjct: 548 QENVLATS--IHGDRLQKEREEALADFRFGKCNVLVATNVAARGLDIENVQHVIIFDLSD 605

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           N E +    +H++ GR GR   +   I  +    +++     S++K
Sbjct: 606 NIEEY----VHRI-GRTGRCGNVGKAITFFDSDDNEDRTVARSLVK 646


>gi|227327575|ref|ZP_03831599.1| primosome assembly protein PriA [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 732

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ +     V+++
Sbjct: 221 LLAGITGSGKTEVYLSVLENVLAQGKQALVLVPEIGLTPQT----IARFRERFNAPVDVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   G+A I+IGT  ALF     + +L L+++DE+H    +Q+
Sbjct: 277 HSALNDSERLAVWLRARSGEASIVIGTRSALF---TPFARLGLIVIDEEHDSSYKQQ 330


>gi|221123568|ref|XP_002167666.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Hydra magnipapillata]
          Length = 635

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 129/337 (38%), Gaps = 57/337 (16%)

Query: 297 ILQGDVGSGKTL-VALIAMAAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNT 348
           I+Q   G+GKTL  AL  +        +        + +AP   LA Q  + ++KY +  
Sbjct: 92  IVQARTGTGKTLGFALPVLEKLKNIDSEQKRKSPLVLTLAPTRELAIQICKEVEKY-KPR 150

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQ 403
           Q+ +    G  P   + + L          ++GT     D I        KL  VI+DE 
Sbjct: 151 QMTISCFYGGAPYDKQEQEL----RNGIDFLVGTPGRILDHINKGRLDVSKLQYVILDEA 206

Query: 404 HRF---GVQQRLK-----LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            R    G Q+ ++        +   P  LL +AT +P  L           K +EK   +
Sbjct: 207 DRMMDMGFQESMEEILSYAYTEDNKPQTLLFSAT-VPAWL----------QKNSEKYLTK 255

Query: 456 KPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICP--------QIEEK--KESNFRSV 503
              K  +I    N+    +E   +     K  YW  P        Q   K  K   F S 
Sbjct: 256 NLKKFDLIGRDKNKGATTVEHKAI-----KCTYWDRPSTIKDIIQQYSGKFGKTIIFTST 310

Query: 504 VERFN--SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            +  N  +L+        ++HG +    +E  + SF+NG    LIAT V   G+D+ +  
Sbjct: 311 KQEANELALNSVINMDSQVLHGDIQQKQRELTLQSFRNGKFNCLIATDVAARGLDIPEVD 370

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ++I         + +H+  GR GR      CI+ Y P
Sbjct: 371 LVIQTEPPKDVDSYIHRA-GRTGRAGRKGVCIIFYKP 406


>gi|148559034|ref|YP_001259643.1| primosome assembly protein PriA [Brucella ovis ATCC 25840]
 gi|163845381|ref|YP_001623036.1| primosome assembly protein PriA [Brucella suis ATCC 23445]
 gi|254708343|ref|ZP_05170171.1| primosome assembly protein PriA [Brucella pinnipedialis M163/99/10]
 gi|254708804|ref|ZP_05170615.1| primosome assembly protein PriA [Brucella pinnipedialis B2/94]
 gi|254714646|ref|ZP_05176457.1| primosome assembly protein PriA [Brucella ceti M644/93/1]
 gi|254717544|ref|ZP_05179355.1| primosome assembly protein PriA [Brucella ceti M13/05/1]
 gi|256030330|ref|ZP_05443944.1| primosome assembly protein PriA [Brucella pinnipedialis M292/94/1]
 gi|256061828|ref|ZP_05451963.1| primosome assembly protein PriA [Brucella neotomae 5K33]
 gi|256160501|ref|ZP_05458190.1| primosome assembly protein PriA [Brucella ceti M490/95/1]
 gi|256255707|ref|ZP_05461243.1| primosome assembly protein PriA [Brucella ceti B1/94]
 gi|260168004|ref|ZP_05754815.1| primosome assembly protein PriA [Brucella sp. F5/99]
 gi|261219378|ref|ZP_05933659.1| primosome assembly protein PriA [Brucella ceti M13/05/1]
 gi|261222918|ref|ZP_05937199.1| primosome assembly protein PriA [Brucella ceti B1/94]
 gi|261315843|ref|ZP_05955040.1| primosome assembly protein PriA [Brucella pinnipedialis M163/99/10]
 gi|261316297|ref|ZP_05955494.1| primosome assembly protein PriA [Brucella pinnipedialis B2/94]
 gi|261322440|ref|ZP_05961637.1| primosome assembly protein PriA [Brucella ceti M644/93/1]
 gi|261325832|ref|ZP_05965029.1| primosome assembly protein PriA [Brucella neotomae 5K33]
 gi|261757449|ref|ZP_06001158.1| DEAD/DEAH box helicase [Brucella sp. F5/99]
 gi|265987364|ref|ZP_06099921.1| primosome assembly protein PriA [Brucella pinnipedialis M292/94/1]
 gi|265998877|ref|ZP_06111434.1| primosome assembly protein PriA [Brucella ceti M490/95/1]
 gi|148370291|gb|ABQ60270.1| primosomal protein N' [Brucella ovis ATCC 25840]
 gi|163676104|gb|ABY40214.1| primosomal protein N' [Brucella suis ATCC 23445]
 gi|260921502|gb|EEX88155.1| primosome assembly protein PriA [Brucella ceti B1/94]
 gi|260924467|gb|EEX91035.1| primosome assembly protein PriA [Brucella ceti M13/05/1]
 gi|261295130|gb|EEX98626.1| primosome assembly protein PriA [Brucella ceti M644/93/1]
 gi|261295520|gb|EEX99016.1| primosome assembly protein PriA [Brucella pinnipedialis B2/94]
 gi|261301812|gb|EEY05309.1| primosome assembly protein PriA [Brucella neotomae 5K33]
 gi|261304869|gb|EEY08366.1| primosome assembly protein PriA [Brucella pinnipedialis M163/99/10]
 gi|261737433|gb|EEY25429.1| DEAD/DEAH box helicase [Brucella sp. F5/99]
 gi|262553566|gb|EEZ09335.1| primosome assembly protein PriA [Brucella ceti M490/95/1]
 gi|264659561|gb|EEZ29822.1| primosome assembly protein PriA [Brucella pinnipedialis M292/94/1]
          Length = 744

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 7/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           ++ Q++A + + + +      + +L G  GSGKT V   A+A A++AG Q +I+ P   L
Sbjct: 212 SQDQQAAAEMLSEAVEAGGFSVSLLDGVTGSGKTEVYFEAVAKALDAGRQVLILLPEIAL 271

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            QQ   F+ ++             ++    R +   ++A G   ++ G   ALF   + +
Sbjct: 272 TQQ---FLDRFHDRFGAKPAEWHSDLAPRTRERVWRQVAEGTVRVVAGARSALF---LPF 325

Query: 393 YKLILVIVDEQHRFGVQQ 410
            +L L++VDE+H    +Q
Sbjct: 326 KELGLIVVDEEHDPAYKQ 343


>gi|110680443|ref|YP_683450.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh
           114]
 gi|109456559|gb|ABG32764.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh
           114]
          Length = 505

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 149/362 (41%), Gaps = 52/362 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGGQAV 325
           +PT  Q  AI   L        +L I Q   G+GKT      ++ L+A   A     +++
Sbjct: 44  TPTPIQAGAIPPALAGRD----VLGIAQ--TGTGKTASFTLPMITLLARGRARARMPRSL 97

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    YT++ ++   ++ G +    + K +++       ++I T   
Sbjct: 98  VLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDKLIDK----GVDVLIATPGR 153

Query: 386 FQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPR 433
             D  +  KL+L     ++VDE  R         +++   LT        L  +AT  P 
Sbjct: 154 LLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTR--QTLFFSATMAPE 211

Query: 434 TLVLTS--LGDIDISKITEKPAGRKPIK--TVIIPINRID-EVIERLKV----VLSEGKK 484
              +T+  L   +  ++  +    + I+   ++   +R D E  E+ KV    + +EG+K
Sbjct: 212 IERITNTFLSAPERIEVARQATTSETIEQGVLMFKASRKDREGTEKRKVLRALIDAEGEK 271

Query: 485 ---AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
              A   C         N ++ V+      + +    A IHG +    +   +D F++G+
Sbjct: 272 CTNAIVFC---------NRKTDVDIVAKSLKKYNYDAAPIHGDLDQSQRTRTLDGFRDGS 322

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            K LIA+ V   G+DV   S +   +        +H++ GR GR       I++  P   
Sbjct: 323 LKFLIASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRI-GRTGRAGRDGKAIMICVPRDE 381

Query: 602 KN 603
           +N
Sbjct: 382 RN 383


>gi|19113775|ref|NP_592863.1| ATP-dependent RNA helicase, eIF4A related (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1352438|sp|Q10055|FAL1_SCHPO RecName: Full=ATP-dependent RNA helicase fal1
 gi|1103737|emb|CAA92238.1| ATP-dependent RNA helicase, eIF4A related (predicted)
           [Schizosaccharomyces pombe]
          Length = 394

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 149/354 (42%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q  AI  I      K R + I Q   G+GKT    I +  +++      QA+I++
Sbjct: 43  TPSAVQSRAIIQIC-----KGRDV-IAQAQSGTGKTATFSIGILQSIDLSVRDTQALILS 96

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +     +  +      G     +  K L+   +GQ H++ GT     D
Sbjct: 97  PTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLD---YGQ-HVVSGTPGRVTD 152

Query: 389 SIQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L      ++I+DE       G ++++    +   P   V++++AT     L +T
Sbjct: 153 MIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMT 212

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +       K T  P              RI  +++R ++ L EG K Y+I     EK+E 
Sbjct: 213 N-------KFTTNPV-------------RI--LVKRDELTL-EGLKQYFIAV---EKEEW 246

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  +  +HG M   +++++M 
Sbjct: 247 KFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFT--VTSMHGEMPQKERDAIMQ 304

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI T +   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 305 DFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENY----IHRI-GRSGR 353


>gi|315051548|ref|XP_003175148.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Arthroderma
           gypseum CBS 118893]
 gi|311340463|gb|EFQ99665.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Arthroderma
           gypseum CBS 118893]
          Length = 813

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 129/332 (38%), Gaps = 57/332 (17%)

Query: 302 VGSGKTLVALIAMAAAVEA-------------GGQAVIMAPIGILAQQ-HYEFIKKYTQN 347
            GSGKT   L+ +   + +             G  A+I+AP   LAQQ   E +K     
Sbjct: 416 TGSGKTAAFLLPLLVYISSLPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPL 475

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHG---QAHIIIGTHALFQDSIQYYKLIL-----VI 399
              +V I+ G+        +LE  A+     A III T     D I+   L+L     VI
Sbjct: 476 NFNVVSIVGGH--------SLEEQAYNLRNGAEIIIATPGRLVDCIERRILVLSQCCYVI 527

Query: 400 VDEQHR----------------FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSL 440
           +DE  R                  V      T++A     +        R   T++ T+ 
Sbjct: 528 MDEADRMIDLGFEEPVNKILDALPVSNEKPDTEEAENAQAMSQHIGGKDRYRQTMMYTAT 587

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
               + +I  K   R  I T+      +D V +R++ V  E K+   +   +  +     
Sbjct: 588 MPSAVERIARKYLRRPAIVTIGNIGEAVDTVEQRVEFVAGEDKRKKRLAEILTSRDYRPP 647

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N +   +      +H   S   +HG  +   +E+ + S +NG+  +L+AT +   
Sbjct: 648 IIVFVNIKRNCDAVARDIKHMGFSAVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGR 707

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           GIDV D S+++  N      +  H++ GR GR
Sbjct: 708 GIDVPDVSLVVNFNMATNIESYTHRI-GRTGR 738


>gi|303237281|ref|ZP_07323851.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens
           FB035-09AN]
 gi|302482668|gb|EFL45693.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens
           FB035-09AN]
          Length = 565

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 153/364 (42%), Gaps = 72/364 (19%)

Query: 281 IKDILQDMS-------QKNRMLRILQG-DV------GSGKTLVALIAMAAAVEAGG---- 322
           I D L DM        Q+N +  IL+G DV      G+GKT   L+ + + +  GG    
Sbjct: 12  ILDALYDMRFEKCTPIQENCIPEILKGKDVLGVAQTGTGKTAAYLLPVLSKLADGGYPED 71

Query: 323 --QAVIMAPIGILAQQHYEFIK--KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               +IM+P   LAQQ  + I+   Y  N    V +  GN    + ++ L+ ++ G A++
Sbjct: 72  AINCLIMSPTRELAQQIDQAIQGFSYYLNGVSCVAVYGGNDGNRYDQE-LKSLSLG-ANL 129

Query: 379 IIGTHALF-----QDSIQYYKLILVIVDEQHRF---GVQQRLKLTQK--ATAPHVLLMTA 428
           +I T   F       ++   K+   I+DE  R    G  + +   QK        ++ +A
Sbjct: 130 VIATPGRFISHMSLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIQKNLPKTCQTIMFSA 189

Query: 429 TPIPR---TLVLTSLGDIDISKIT-EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           T +P+    L  T L +  + K+   KPA                E I +L  V  E +K
Sbjct: 190 T-MPKKIEDLAQTLLTNPSVIKLAVSKPA----------------EKIHQLAYVCHETQK 232

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI-----------IHGRMSDIDKESV 533
              I       K  N + V+    S  +     IA+           +H  ++  +++ +
Sbjct: 233 MGIIKDIF---KAGNLQRVI--IFSGSKQKVKQIALSLNQKKINCGQMHSDLAQAERDEM 287

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FK+G   +L+AT ++  GID+ D +++I  +  H     +H++ GR  R +   S I
Sbjct: 288 MFKFKSGQIDVLVATDILARGIDIDDIAMVINYDVPHDAEDYVHRI-GRTARADRKGSAI 346

Query: 594 LLYH 597
              +
Sbjct: 347 TFVN 350


>gi|242060494|ref|XP_002451536.1| hypothetical protein SORBIDRAFT_04g003390 [Sorghum bicolor]
 gi|241931367|gb|EES04512.1| hypothetical protein SORBIDRAFT_04g003390 [Sorghum bicolor]
          Length = 410

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 125/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 78  IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 137

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 138 ACVGGTSV----REDQRILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMF--VLDEADEM 191

Query: 404 HRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++        +   V + +AT  P  L +T        K   KP        V
Sbjct: 192 LSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR-------KFMNKP--------V 236

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 237 RILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKM 296

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 297 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 356

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 357 PENYLHRI-GRSGR 369


>gi|225628359|ref|ZP_03786393.1| primosomal protein N'' [Brucella ceti str. Cudo]
 gi|225616205|gb|EEH13253.1| primosomal protein N'' [Brucella ceti str. Cudo]
          Length = 752

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 24/190 (12%)

Query: 239 ALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSP----------------TKSQESAI 281
            L   R       G+ + V +G  AQ I   I   P                ++ Q++A 
Sbjct: 160 GLAWTRSGLAHAAGVSLTVVDGLKAQGIFEEIMLPPPAVVAKPDTDYARATLSQDQQAAA 219

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           + + + +      + +L G  GSGKT V   A+A A++AG Q +I+ P   L QQ   F+
Sbjct: 220 EMLSEAVEAGGFSVSLLDGVTGSGKTEVYFEAVAKALDAGRQVLILLPEIALTQQ---FL 276

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIV 400
            ++             ++    R +   ++A G   ++ G   ALF   + + +L L++V
Sbjct: 277 DRFHDRFGAKPAEWHSDLAPRTRERVWRQVAEGTVRVVAGARSALF---LPFKELGLIVV 333

Query: 401 DEQHRFGVQQ 410
           DE+H    +Q
Sbjct: 334 DEEHDPAYKQ 343


>gi|153008434|ref|YP_001369649.1| primosome assembly protein PriA [Ochrobactrum anthropi ATCC 49188]
 gi|151560322|gb|ABS13820.1| primosomal protein N' [Ochrobactrum anthropi ATCC 49188]
          Length = 740

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 7/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           ++ Q++A + + + +      + +L G  GSGKT V   A+A A+E G Q +I+ P   L
Sbjct: 208 SEDQQAAAEMLSEAVEADCFSVSLLDGVTGSGKTEVYFEAVAKAIEQGKQVLILLPEIAL 267

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            QQ   F+ ++             ++    R +   +IA G   ++ G   ALF   + +
Sbjct: 268 TQQ---FLDRFHDRFGAKPAEWHSDLAPRTRERVWRQIAEGTVRVVAGARSALF---LPF 321

Query: 393 YKLILVIVDEQHRFGVQQ 410
            +L L++VDE+H    +Q
Sbjct: 322 KELGLIVVDEEHDPAYKQ 339


>gi|82700584|ref|YP_415158.1| primosome assembly protein PriA [Brucella melitensis biovar Abortus
           2308]
 gi|237816171|ref|ZP_04595166.1| primosomal protein N' [Brucella abortus str. 2308 A]
 gi|254698108|ref|ZP_05159936.1| primosome assembly protein PriA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730992|ref|ZP_05189570.1| primosome assembly protein PriA [Brucella abortus bv. 4 str. 292]
 gi|260547095|ref|ZP_05822833.1| DEAD/DEAH box helicase [Brucella abortus NCTC 8038]
 gi|260758715|ref|ZP_05871063.1| primosome assembly protein PriA [Brucella abortus bv. 4 str. 292]
 gi|260762549|ref|ZP_05874886.1| primosome assembly protein PriA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|82616685|emb|CAJ11768.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
           motif A (P-loop):Primosomal protein n [Brucella
           melitensis biovar Abortus 2308]
 gi|237788633|gb|EEP62846.1| primosomal protein N' [Brucella abortus str. 2308 A]
 gi|260095460|gb|EEW79338.1| DEAD/DEAH box helicase [Brucella abortus NCTC 8038]
 gi|260669033|gb|EEX55973.1| primosome assembly protein PriA [Brucella abortus bv. 4 str. 292]
 gi|260672975|gb|EEX59796.1| primosome assembly protein PriA [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 744

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 7/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           ++ Q++A + + + +      + +L G  GSGKT V   A+A A++AG Q +I+ P   L
Sbjct: 212 SQDQQAAAEMLSEAVEAGGFSVSLLDGVTGSGKTEVYFEAVAKALDAGRQVLILLPEIAL 271

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            QQ   F+ ++             ++    R +   ++A G   ++ G   ALF   + +
Sbjct: 272 TQQ---FLDRFHDRFGAKPAEWHSDLAPRTRERVWRQVAEGTVRVVAGARSALF---LPF 325

Query: 393 YKLILVIVDEQHRFGVQQ 410
            +L L++VDE+H    +Q
Sbjct: 326 KELGLIVVDEEHDPAYKQ 343


>gi|328709089|ref|XP_003243867.1| PREDICTED: probable ATP-dependent RNA helicase pitchoune-like
           [Acyrthosiphon pisum]
          Length = 511

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 126/328 (38%), Gaps = 58/328 (17%)

Query: 302 VGSGKTLVALIAMAAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI     +         G   +I++P   L+ Q Y  +K+  ++      +
Sbjct: 69  TGSGKTLAFLIPAVELIYKLKFMPRNGTGCIIISPTRELSMQTYGVLKELMKHHHHTYGL 128

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHRF-- 406
           + G    A+R+    +++ G  +I++ T     D +Q      Y  L  +I+DE  R   
Sbjct: 129 MMGG---ANRQTEATKLSKG-INIVVATPGRLLDHLQNSPDFLYKNLQCLIIDEADRILD 184

Query: 407 -GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G ++ +K  +         ++ +AT   +T  LT+                  +K   I
Sbjct: 185 IGFEEEIKQIINLLPKRRQTMMFSATKTHKTDALTTFA----------------LKKEPI 228

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICP-------------QIEEKKESNFRS---VVERF 507
            I   D  +E     L +G   Y ICP             +  +KK   F S    V+ F
Sbjct: 229 YIGVDDSKVEATVDGLEQG---YVICPSEKRFLLLFTFLKKNRKKKVMVFFSSCLAVKYF 285

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           + L  +    +  IHG+     + +    F N    +L+ T V   G+D+     I+  +
Sbjct: 286 HELLNYIDLPVMCIHGKQKQERRTTTFFQFCNAETGILLCTDVAARGLDIPLVDWIVQYD 345

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILL 595
                   +H++ GR  RGE  S   LL
Sbjct: 346 PPDDPKEYIHRV-GRTARGEGSSGHALL 372


>gi|195453216|ref|XP_002073690.1| GK14240 [Drosophila willistoni]
 gi|194169775|gb|EDW84676.1| GK14240 [Drosophila willistoni]
          Length = 663

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 130/334 (38%), Gaps = 62/334 (18%)

Query: 302 VGSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI     +         G   +I++P   L+ Q +  +K+   +      +
Sbjct: 218 TGSGKTLAFLIPAVELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGL 277

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHRF-- 406
           + G    ++R+   E++  G  +I++ T     D +Q      Y  L  +I+DE  R   
Sbjct: 278 VMGG---SNRQVESEKLGKG-INILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILE 333

Query: 407 -GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G ++ LK  +    T    +L +AT   R   L+ L              ++PI  V +
Sbjct: 334 IGFEEELKQIINLLPTRRQTMLFSATQTARIDALSKLA-----------LKKEPI-YVGV 381

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEK---------KESNFRSVVERFNSL---- 510
             N  +  +E L+       + Y +CP   EK         K++  + V+  F+S     
Sbjct: 382 HDNEANATVEGLE-------QGYIVCP--SEKRLLVLFTFLKKNRKKKVMVFFSSCMSVK 432

Query: 511 --HEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             HE F      +  IHG+     + +    F N    +L+ T V   G+D+     I+ 
Sbjct: 433 YHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPQVDWIVQ 492

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            +        +H++ GR  RG   S   LL   P
Sbjct: 493 YDPPDDPREYIHRV-GRTARGSGQSGHALLLMRP 525


>gi|145349996|ref|XP_001419411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579642|gb|ABO97704.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 394

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 135/321 (42%), Gaps = 55/321 (17%)

Query: 301 DVGSGKTLVALIAMA--AAVEA------GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-II 351
           + GSGKT    I M   A  +A      G  A++MAP   LAQQ     K +T++++   
Sbjct: 77  ETGSGKTAAFSIPMIQHALNQAPLRQGDGPYAIVMAPTRELAQQIEAEAKTFTRSSKGFR 136

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF 406
             II G    + +R AL         I++ T     D +Q       ++  V++DE  R 
Sbjct: 137 TAIIVGGTNMSEQRGAL----RSGVQIVVATPGRLIDHLQQGNTNLSRVSFVVLDEADRM 192

Query: 407 ---GVQQRLK-LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
              G + +++ +      PH  L+ +  +P  +   +      S    KP   K + T  
Sbjct: 193 LDMGFEPQIREVLMNLPKPHQTLLFSATMPSEVEALA------SDYLHKPVKVK-VGTTS 245

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-----------FRSVVERFNSLH 511
            P   + + +E  KVV +E K    +   I E++E+            F     R + + 
Sbjct: 246 APTANVSQHLE--KVVDAE-KVDRLVTMLIGEQREAMKLGQDMPMTVIFVERKNRADEIA 302

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII---- 564
           E   +     A +HG  S  ++E+ +  +K G C +L+AT V   G+DV   + ++    
Sbjct: 303 ELLNAENVPAAALHGGRSQGEREAALHDYKTGRCSVLVATDVAARGLDVKGVAHVVNLDL 362

Query: 565 IENAEHFGLAQLHQLRGRVGR 585
             N E +    +H++ GR GR
Sbjct: 363 PRNFEDY----VHRI-GRTGR 378


>gi|118602171|ref|YP_903386.1| primosomal protein N' [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567110|gb|ABL01915.1| primosomal protein N' [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 654

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 25/231 (10%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP- 329
           F  +  Q  AI  IL+   Q +  L  L G  GSGKT V L    A +    Q +++ P 
Sbjct: 123 FKLSDEQNIAITQILKSNYQYHAFL--LHGVTGSGKTEVYLHTTQAMLNQKKQVLVLVPE 180

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           IG+  Q     I ++    +  V  I   + +  +  A     +G+A ++IGT +     
Sbjct: 181 IGLTPQ----MITRFESRLKTRVVTIHSQLNETKKLDAYLMAKNGEAGVVIGTRSAIFSP 236

Query: 390 IQYYKLILVIVDEQH--RFGVQQRLKLTQK------ATAPHVLLMTATPIPRTLVLTSLG 441
           +    L L+I+DE+H   F  Q   +   K      A   ++ ++  T  P   +L ++ 
Sbjct: 237 MP--NLGLIIIDEEHDNSFKQQSNFRYCAKNLSFIRAKQANIPIVLGTATPSLELLKNVM 294

Query: 442 DIDISKIT-EKPAGRKPIKTVIIPINRIDE-------VIERLKVVLSEGKK 484
           D  I++IT  K  G   +  + +   R +        +IE+ K  LS GK+
Sbjct: 295 DQKITRITLTKRTGNATLPKISLIDMRSNTDGALSKMLIEKTKQYLSAGKQ 345


>gi|91226632|ref|ZP_01261356.1| primosome assembly protein PriA [Vibrio alginolyticus 12G01]
 gi|91189106|gb|EAS75388.1| primosome assembly protein PriA [Vibrio alginolyticus 12G01]
          Length = 548

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 19/189 (10%)

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQN 347
           SQ      +L+G  GSGKT V L  +   +E G QA+++ P IG+  Q     I ++ + 
Sbjct: 28  SQTGFASYLLEGVTGSGKTEVYLNLIKPVLEQGKQALVLVPEIGLTPQT----INRFKRR 83

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + V++I   + +  R  A        A IIIGT +       +  L ++IVDE+H   
Sbjct: 84  FNVPVDVIHSGLNETERLNAWLSARDKAAGIIIGTRSALLAP--FADLGIIIVDEEHDTS 141

Query: 408 VQQRLKL-----------TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            +Q+  L             K   P ++L +ATP   TL     G      +T++     
Sbjct: 142 YKQQDSLRYHARDVAVMRAHKEQVP-IVLGSATPALETLHNALSGKYHHLTLTQRAGSAV 200

Query: 457 PIKTVIIPI 465
           P    ++ +
Sbjct: 201 PTTNKVLDV 209


>gi|26247679|ref|NP_753719.1| ATP-dependent RNA helicase DbpA [Escherichia coli CFT073]
 gi|26108081|gb|AAN80281.1|AE016760_140 ATP-independent RNA helicase dbpA [Escherichia coli CFT073]
          Length = 457

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 127/326 (38%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                  K  I  + R+        + L +       C       + + +SV +  N + 
Sbjct: 219 QFYETSSKGKIPLLQRL--------LSLHQPSSCVVFC-----NTKKDCQSVCDALNEVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S    +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 QSALS----LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELVVNFELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|88856781|ref|ZP_01131435.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88813949|gb|EAR23817.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 499

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 135/318 (42%), Gaps = 37/318 (11%)

Query: 297 ILQGDVGSGKTL----VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           I Q   G+GKTL      L ++    E G +A+I+ P   L  Q  E +     N    +
Sbjct: 42  IGQAKTGTGKTLGFGLPVLQSLGINPEPGVKALIVVPTRELCVQVAEDLVLAASNRSTKI 101

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             I G   +A+  + +E+I  G A +I+GT     D      L L     +++DE  +  
Sbjct: 102 AAIYGG--KAYEGQ-VEQIKDG-AQVIVGTPGRLLDLASQRMLSLKDIKVMVLDEADKML 157

Query: 406 -FGVQQRLKLTQKATAP--HVLLMTAT-PIPRTLVLTSLGDIDIS-KITEKPAG--RKPI 458
             G    ++     T P  H +L +AT P P   +     +  I  + T+   G  +K I
Sbjct: 158 DLGFLADIEKLFAQTPPTRHTMLFSATMPGPIVALARRFMNKPIHIRATDPDEGLTQKNI 217

Query: 459 KTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER-FNSLHEHFT 515
           K V+   + +D  EVI R  ++ SEG+    +  + +         + +R FN+      
Sbjct: 218 KHVVYRAHNLDKDEVIAR--ILQSEGRGKTVVFTRTKRAAAKLVEELNDRGFNA------ 269

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
              A +HG ++   +E  M +FK G   +LIAT V   GIDV D + +I           
Sbjct: 270 ---AAVHGDLNQEQRERAMAAFKAGKKDILIATDVAARGIDVNDVTHVINHTIPDDHDTY 326

Query: 576 LHQLRGRVGRGEEISSCI 593
           LH+  GR GR  +    +
Sbjct: 327 LHRA-GRTGRAGKTGVAV 343


>gi|262190914|ref|ZP_06049130.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|297580199|ref|ZP_06942126.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
 gi|262033210|gb|EEY51732.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|297535845|gb|EFH74679.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
          Length = 422

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 152/391 (38%), Gaps = 50/391 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQG-DVGSGKTLV-ALIAMAAAVEAGGQ------ 323
           +PT  Q+ AI  +LQ          +L G   G+GKT    L  +   +E   Q      
Sbjct: 28  NPTPIQQQAIPHVLQGKD-------VLAGAQTGTGKTAAFGLPLIQRFIEQPWQRETNSK 80

Query: 324 ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I
Sbjct: 81  EIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHL----RGGVDILI 136

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D      L L     +++DE  R      +   Q+      +L   +P+ +TL
Sbjct: 137 ATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR------VLRRLSPLRQTL 190

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             ++  D  I  +  +   R PI+  + P N   E ++++   + + +K   +   I  K
Sbjct: 191 FFSATFDSKIKAVAYRIM-RDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSK 249

Query: 496 KESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                  F    +  ++L E           I+G  S   ++  +D FK G  + LIAT 
Sbjct: 250 NWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATD 309

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYH---PPLSK--- 602
           V   G+D+     ++  +        +H++ GR GR       I LL H   P L     
Sbjct: 310 VAARGLDIAQLEQVVNYDMPFKAEDYVHRI-GRTGRAGLAGLAISLLSHDEQPQLEAIER 368

Query: 603 --NSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
             N+      LK  E   ++ EE+  +R  G
Sbjct: 369 LLNTRLPQEWLKGFEPSPVVHEENSPRRSAG 399


>gi|325188274|emb|CCA22814.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 414

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 141/340 (41%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ A+K IL           I Q   G+GKT    +++   +       QA+I+AP
Sbjct: 64  PSAIQQRAVKPILLGHDC------IAQAQSGTGKTATFTVSILQKININLKETQALILAP 117

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ  + I        I V    G       R  +  +  G  HI++GT     D 
Sbjct: 118 TRELAQQIVKVIAAIGDYMSINVHACVGGTAV---RDDIHTLQQG-VHIVVGTPGRVGDM 173

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTS 439
           I    L        +L   DE    G Q ++    +    +  V L +AT +P+      
Sbjct: 174 INQGALRTEAVKMFVLDEADEMLSRGFQDQIYDVFRFLPESVQVALFSAT-MPQ------ 226

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
               ++ ++T+K   R PI+   I + R +  +E +K      ++  W    + +  E+ 
Sbjct: 227 ----EVLEVTQKFM-RDPIR---IMVKRDELTLEGIKQFFVAIEREEWKFDTLCDLYETL 278

Query: 499 ---------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N R  V+      +    +++ +HG M    ++ +M  F++G+ ++LI T 
Sbjct: 279 TITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVLITTD 338

Query: 550 VIEVGIDVVDASIIIIE----NAEHFGLAQLHQLRGRVGR 585
           ++  GIDV   S+++      N E++    +H++ GR GR
Sbjct: 339 LLARGIDVQQVSLVVNYDLPLNRENY----IHRI-GRSGR 373


>gi|313205949|ref|YP_004045126.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445265|gb|ADQ81620.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315022262|gb|EFT35290.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
           RA-YM]
 gi|325336611|gb|ADZ12885.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
           RA-GD]
          Length = 371

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 145/349 (41%), Gaps = 53/349 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAV--- 325
           +PT  QE AI  IL+      R L I     G+GKT    + L+ + +     G++V   
Sbjct: 23  TPTAIQEKAIPTILE-----GRDL-IGCAQTGTGKTAAFSIPLLQILSETPKKGKSVRAL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E I++Y++   I    I G +PQ  + +AL +       I+I T   
Sbjct: 77  ILTPTRELAIQIQENIEQYSKFLNIKHLSIFGGVPQGKQERALNQ----GVDILIATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTL 435
             D +Q   L L     +++DE  R    G    +K  LT+       L  +AT +P ++
Sbjct: 133 LLDLMQQGLLSLSQIEILVLDEADRMLDMGFVNDVKKILTKVPKKRQTLFFSAT-MPNSI 191

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
              +   +D            P +  + P++   + IE+    + +  K   +   +++ 
Sbjct: 192 RQFAETILD-----------NPAEVTVTPVSSTAKTIEQSVYFVEKNDKTNLLINILKDT 240

Query: 496 KESNFRSVV-ERFNSLHEHFTSSI-------AIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            E   RS++  R     +     +       A IHG  S   ++  +  FK+    +LIA
Sbjct: 241 SE--LRSLIFTRTKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKDFKDNRISVLIA 298

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           T +   GID+ +   +I     +     +H++ GR GR    G  IS C
Sbjct: 299 TDIAARGIDIDELPQVINYELPNVPETYVHRI-GRTGRAGTSGNAISFC 346


>gi|306821005|ref|ZP_07454624.1| ATP-dependent RNA helicase DbpA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550946|gb|EFM38918.1| ATP-dependent RNA helicase DbpA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 387

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 140/343 (40%), Gaps = 42/343 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +PT+ QE AI  IL     K R L I +   G+GKTL  L+ +    +      Q VI++
Sbjct: 24  TPTQIQEEAIPIIL-----KKRNL-IAKAQTGTGKTLAFLLPIMTMTDENLRLPQTVILS 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L+ Q     KK   +  +  ++   N+   H  K  E      + II+ T     +
Sbjct: 78  PTRELSNQ----TKKVFDDLNVDKKLSCANIVGGHDFKKQENKFVSNSQIIVATPGRLLE 133

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+          + I+   D+   +G  + + L +        ++L++AT +P+ +   
Sbjct: 134 HIRSGNINMKHISRFIIDEADQMLEYGFLEDIVLLKDKLPDKLQIVLLSAT-MPKPI--- 189

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
               ID++K       + P+K  +     + E IE++    +E  K   +   +EE +  
Sbjct: 190 ----IDLAK----KLMKNPVKIDVTKEKTVTENIEQILFHTTEKFKNDTLKFVLEEYRPF 241

Query: 498 -----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N +   E+ N           IIHG  S   +E +++ F+    + L++T +  
Sbjct: 242 MSIIFCNSKKNAEKLNEYMSISGYDCDIIHGDFSQKKREHILNEFRKMKFQYLVSTDLSA 301

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            G D+   + +I           +H++ GR GR E+    I L
Sbjct: 302 RGFDIDGVTHVINYEVPTDYNYYIHRI-GRTGRAEKTGIAISL 343


>gi|283834709|ref|ZP_06354450.1| primosomal protein [Citrobacter youngae ATCC 29220]
 gi|291069635|gb|EFE07744.1| primosomal protein [Citrobacter youngae ATCC 29220]
          Length = 732

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA++M P IG+  Q     I ++ +     +E++
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQT----IARFRERFNAPIEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +  +G+A I+IGT  +LF     +  L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLF---TPFKNLGVIVIDEEHDSSYKQQ 330


>gi|256421635|ref|YP_003122288.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256036543|gb|ACU60087.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 446

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 5/108 (4%)

Query: 500 FRSVVERFNSLHEH----FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           F +  E  N L+E     F     +IH   +   + + ++ FK+G+ + +IAT +I  G+
Sbjct: 248 FVATKEMANDLYEQLETKFPEQAGVIHSNKAQNHRFNTVNKFKDGSYRFIIATDIIARGL 307

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           D+ + S +I  +      + +H++ GR GR ++    IL   P   +N
Sbjct: 308 DIAEVSHVISFDTPEVPESYMHRI-GRTGRADKEGHSILFTKPQEKEN 354


>gi|255691171|ref|ZP_05414846.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565]
 gi|260623074|gb|EEX45945.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565]
          Length = 374

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 146/355 (41%), Gaps = 61/355 (17%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GG 322
            +PT  QE AI   L     K  +L   Q   G+GKT    I +   ++A        G 
Sbjct: 22  IAPTSIQEKAIPAALA----KRDILGCAQ--TGTGKTASFAIPIIQHLQANKETDKRQGI 75

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E I  Y++ T++   +I G + Q   R  ++ +  G   I++ T
Sbjct: 76  KALILTPTRELAMQISECIDDYSKYTRVRHGVIFGGVNQ---RPQVDMLRKG-IDILVAT 131

Query: 383 HALFQDSIQYYKLILV-----IVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIP 432
                D I    + L      ++DE  R    G    +K  L +       L  +AT   
Sbjct: 132 PGRLLDLINQGHIHLTNIEYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFFSATMPD 191

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
             + LT            K   + P+K  I P +   + I+++ +   E K+   +   I
Sbjct: 192 SIIALT------------KSLLKNPVKIYITPKSSTVDSIKQI-IYFVEKKEKSQLLISI 238

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIA-----------IIHGRMSDIDKESVMDSFKNGT 541
            +K E   RSV+    S  +H    I             IHG  S   ++S + +FK+G 
Sbjct: 239 LQKAED--RSVL--IFSRTKHNADKIVRILGKAGIGSQAIHGNKSQAARQSALGNFKSGK 294

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
            K+++AT +   GID+ +  ++I  +        +H++ GR GR    G  ++ C
Sbjct: 295 TKVMVATDIASRGIDINELPLVINYDLPDVPETYVHRI-GRTGRAGNEGTALTFC 348


>gi|224370609|ref|YP_002604773.1| DeaD [Desulfobacterium autotrophicum HRM2]
 gi|223693326|gb|ACN16609.1| DeaD [Desulfobacterium autotrophicum HRM2]
          Length = 616

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 129/316 (40%), Gaps = 29/316 (9%)

Query: 299 QGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEI 354
           Q   G+GKT    + + + ++      Q +++AP   LA Q  E  K Y    +   V  
Sbjct: 62  QAQTGTGKTAAFALPLLSRIDIKLKKPQVLVLAPTRELAIQVAESFKGYAARIKGFNVLP 121

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF 406
           + G    A +   L+R      H+I+GT     D +        Q   L++   DE  R 
Sbjct: 122 VYGGQAYAGQLNQLKR----GVHVIVGTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRM 177

Query: 407 GVQQRLKLTQKATAP--HVLLMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           G    ++   + T P   V L +AT P P + + +  L D     I  + A    I+   
Sbjct: 178 GFIDDVEWILEQTPPGRQVALFSATMPAPIKKIAIKYLTDPKDVFIRLRTATADTIRQRF 237

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
             +    ++    +++ +E   A  +  + +        + VE    L     +++A+ +
Sbjct: 238 WMVKGTHKLDALTRILEAETFDAIIVFVRTKT-------ATVELAEKLEARGYAAVAL-N 289

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G ++   +E  +D FK G   +L+AT V   G+DV   S +I  +  +   + +H++ GR
Sbjct: 290 GDIAQKARERTIDRFKKGKIDILVATDVAARGLDVERVSHVINYDIPNGAESYVHRI-GR 348

Query: 583 VGRGEEISSCILLYHP 598
            GR       IL   P
Sbjct: 349 TGRAGRAGDAILFVSP 364


>gi|73621052|sp|Q4R4Y9|IF4A2_MACFA RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|67970988|dbj|BAE01836.1| unnamed protein product [Macaca fascicularis]
          Length = 408

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 125/291 (42%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 75  IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 134

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQH---- 404
              G     + R  ++++     HI++GT     D +    L      + ++DE      
Sbjct: 135 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADGMLS 191

Query: 405 RFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           R    Q  ++ QK  T+  V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 192 RGFKDQIYEIFQKLNTSIQVVLLSAT-MP----------TDVLEVTKKFM-RDPIR---I 236

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 237 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHA 296

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 297 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 347


>gi|328675823|gb|AEB28498.1| Cold-shock DEAD-box protein A [Francisella cf. novicida 3523]
          Length = 570

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 142/334 (42%), Gaps = 47/334 (14%)

Query: 299 QGDVGSGKTLVALIAMAAAVE-----AGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           Q   G+GKT    + +   ++        Q +++AP   LA Q  E  + + +N   + V
Sbjct: 50  QAQTGTGKTAAFALPLINNIDLRSRDKSPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDV 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQH 404
             I G      + +AL++       +++GT     D I+           L+L   DE  
Sbjct: 110 ACIYGGQEYGSQIRALKQ----GVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEML 165

Query: 405 RFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           R G     R  L+  +     LL +AT IP           DI+ I E+   R P K  +
Sbjct: 166 RMGFIDDVRFVLSHISEQCQRLLFSAT-IP----------TDIADIIEEYL-RNPCKIQV 213

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--------RSVVERFNSLHEHF 514
               +    + + K ++ +G +      ++ E +E++          S +E  ++L +  
Sbjct: 214 KAKTKTANTVTQ-KFIVIKGFRKIDALDRLLEIEETDGVIIFVKTKTSTIEVADNL-KAL 271

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A I+G M    +E ++D F+N    +L+AT V+  GID+   S +I  +  +    
Sbjct: 272 GYKVAAINGDMQQSQREYIVDQFRNAKSDILVATDVVARGIDLERISHVINYDMPNDTDT 331

Query: 575 QLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTR 607
            +H++ GR GR G E +S  L+   PL +  + R
Sbjct: 332 YVHRI-GRTGRAGREGTSISLV---PLKEMRFLR 361


>gi|307181491|gb|EFN69083.1| Probable ATP-dependent RNA helicase DDX23 [Camponotus floridanus]
          Length = 669

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 134/339 (39%), Gaps = 52/339 (15%)

Query: 300 GDVGSGKTLVALIAMAAAV------------EAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
            + GSGKTL  LI +   +            + G  ++I+AP   LAQQ  E   K+ Q 
Sbjct: 285 AETGSGKTLAFLIPLLLWITNLPKIERLDEADQGPYSIILAPTRELAQQIEEETNKFGQP 344

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             I   ++ G +    R +   R+  G   I+I T     D ++   L+L     +++DE
Sbjct: 345 LGIRTVVVVGGL---SREEQGFRLRMG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 400

Query: 403 QHRF-------GVQQRLKL---------TQKATAPHVLLM---TATPIPRTLVLTSLGDI 443
             R         VQ+ L+           + A     LL    T     +T++ T+    
Sbjct: 401 ADRMIDMGFEPDVQKILEYMPVTNLKPDNEDAENEEKLLANYNTKKKYRQTVMFTATMPP 460

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----- 498
            + ++  +   R+P    I  + +  E  E++  ++ E  K   +   +    E      
Sbjct: 461 AVERLA-RTYLRRPAVVYIGSVGKPTERTEQIVHIMGEADKRKKLMEILSRGVEPPVIIF 519

Query: 499 -NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N +   +      E F  +   +HG      +E  + S K+G+  +L+AT V   GID+
Sbjct: 520 VNQKKGADVLAKGLEKFGYNACTLHGGKGQEQREYALASLKSGSKDILVATDVAGRGIDI 579

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
            D S++I  +         H++ GR GR    G  IS C
Sbjct: 580 KDVSMVINYDMAKTIEDYTHRI-GRTGRAGKAGLAISFC 617


>gi|239636846|ref|ZP_04677845.1| ATP-dependent DNA helicase RecQ [Staphylococcus warneri L37603]
 gi|239597520|gb|EEQ80018.1| ATP-dependent DNA helicase RecQ [Staphylococcus warneri L37603]
          Length = 459

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 138/340 (40%), Gaps = 52/340 (15%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           +DI+  +  +   L IL    GSGK+L     +   +      VI   I ++  Q    +
Sbjct: 20  EDIISSVLDQKHTLGILP--TGSGKSLC--YQLPTYILEKPTLVISPLISLMDDQ----V 71

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI----- 396
            +   N +  V  I   M    +R+ L  I   +  I +    + Q   Q +KLI     
Sbjct: 72  MQMKLNGEHAVCCIHSGMDNTEKRQNLSNIRQSK-FIYLSPEFILQP--QNFKLIANIDF 128

Query: 397 -LVIVDEQH---RFGVQQRL------KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            L+++DE H    +G   R       K+T    +  +L +TAT  P         + D++
Sbjct: 129 GLIVLDEAHCLSEWGYDFRPHYALIGKITTSFKSATILALTATAPPHL-------ESDLN 181

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
           ++           T+   +NRI+  ++ L     E +K  W+ PQ+ E   +      ++
Sbjct: 182 EML-----NVTFNTIKTSMNRINISLKHLNFGSYE-EKIDWLLPQLNETGPTIIYVSSKK 235

Query: 507 FN-SLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
              +L +    S     I HG +S  ++++V   F N    +++AT+   +GI+  D   
Sbjct: 236 LCLTLAQLIYDSGFLTGIYHGDLSYQERQTVQQQFLNNDIPIIVATSAFGMGINKKDIRT 295

Query: 563 IIIENAEHFGL----AQLHQLRGRVGRGEEISSCILLYHP 598
           +I     HF L    +   Q  GR GR  E S  I L+ P
Sbjct: 296 VI-----HFHLSSSPSNYLQEIGRAGRDGEASQAISLFQP 330


>gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
 gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
          Length = 469

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 121/286 (42%), Gaps = 25/286 (8%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q +E +K+Y + T +   ++ G +  + +      I      I+I T
Sbjct: 93  RALILVPTRELADQVFEDVKRYAKYTPVKSAVVFGGVDISSQTS----ILRAGVEILIAT 148

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLV 436
                D +Q   + L     +++DE  R      L   Q+       ++   P  R  L+
Sbjct: 149 PGRLLDHVQQKNVNLSHTQILVLDEADRMLDMGFLPDLQR-------IVNLLPKQRQNLL 201

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    DI K+  +   + P+   +   N   E +++    + E +K   +   ++++ 
Sbjct: 202 FSATFSNDIKKLA-RSFMKDPVTVEVARQNATAENVKQTVYRIEESEKNAAVEHLLKDRN 260

Query: 497 E------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +      SN ++   R     E      + IHG  +  ++ + +++FK+G+  +L+AT V
Sbjct: 261 QEQVLIFSNTKAGASRLARQLERKGMKASAIHGDKTQAERMATLEAFKSGSIDILVATDV 320

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
              G+ + +   +I  +        +H++ GR GR       I LY
Sbjct: 321 AARGLHIEELPCVINFDLPFVAEDYVHRI-GRTGRAGSKGEAISLY 365


>gi|261368147|ref|ZP_05981030.1| cold-shock DEAD box protein A [Subdoligranulum variabile DSM 15176]
 gi|282569910|gb|EFB75445.1| cold-shock DEAD box protein A [Subdoligranulum variabile DSM 15176]
          Length = 395

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 145/347 (41%), Gaps = 51/347 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQII-V 352
           I +   G+GKT+   I + + V+      QAV+++P   LAQQ  + ++   Q    I +
Sbjct: 43  IAKAPTGTGKTVAFGIPILSKVDPASLKPQAVVLSPTRELAQQIAQDLQNLAQFLPAIKI 102

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G      +++ L+        I++ T     D  +++ + +     V++DE     
Sbjct: 103 VCVYGGAGLDKQQRQLK----AGCQIVVATPGRLMDHYRHHAIDVSDVETVVLDE----- 153

Query: 408 VQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
             + L +       H++          + +AT     L +  L   + ++++ +P     
Sbjct: 154 ADEMLNMGFYKDVRHIIDLMKHRKSLSMFSATISREVLDIGWLYQHNAAEVSVQPVEDSS 213

Query: 458 IKTV---IIPINRIDEVIERLKVVLSEGKKAYWI-CPQIEEKKESNFRSVVERFNSLHEH 513
            K     ++   R D++ +  ++++SEG K   I C       + N   +  +   L+  
Sbjct: 214 PKIAQYKLLTTGR-DKLADAAQIIISEGYKRVMIFC-----NTKYNTGMLANQLARLN-- 265

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAE 569
              ++  +HG +S  ++  +M  FK G   +L+AT V   GIDV D   +I     E  E
Sbjct: 266 --FNVDCLHGDLSQAERNRIMTRFKAGEIAVLVATDVAARGIDVSDVDAVINYDVPEENE 323

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           H+     H++ GR GR  +  +  L Y     K     L + +N +D
Sbjct: 324 HY----THRI-GRTGRARKEGASYLFYTKEEQKRVDQLLRLTRNLDD 365


>gi|115397801|ref|XP_001214492.1| hypothetical protein ATEG_05314 [Aspergillus terreus NIH2624]
 gi|121738078|sp|Q0CLX0|PRP28_ASPTN RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|114192683|gb|EAU34383.1| hypothetical protein ATEG_05314 [Aspergillus terreus NIH2624]
          Length = 783

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 124/306 (40%), Gaps = 52/306 (16%)

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH---GQAH 377
           G  A+++AP   LAQQ     KK+T      V  I G         +LE  A+     A 
Sbjct: 421 GPYAIVLAPTRELAQQIEIEAKKFTIPLGFTVVSIVGG-------HSLEEQAYSLRNGAE 473

Query: 378 IIIGTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLTQKA----------- 418
           III T     D I+   L+L     VI+DE  R    G ++ +     A           
Sbjct: 474 IIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSD 533

Query: 419 TAPHVLLMTA---------TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
            A +   M+          T   +T++ T+     + +I  K   R  I T+      +D
Sbjct: 534 AAENAAAMSQLHHAGGGRDTRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVD 593

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----------SIA 519
            V +R++++  E K+   +   +       FR  +  F ++  +  +          S  
Sbjct: 594 TVEQRVELIAGEDKRKKRLGDIL---SSGEFRPPIIVFVNIKRNCDAIAREIKQWGFSSV 650

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG  +   +E+ + S +NG+  +L+AT +   GIDV D S+++  N      +  H++
Sbjct: 651 TLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRI 710

Query: 580 RGRVGR 585
            GR GR
Sbjct: 711 -GRTGR 715


>gi|148263462|ref|YP_001230168.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
 gi|146396962|gb|ABQ25595.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
          Length = 474

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 138/317 (43%), Gaps = 48/317 (15%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQ---HYEFIKKYTQNTQI 350
           I +   GSGKT    + L++   A  +  QA+++ P   LA Q       + ++T N ++
Sbjct: 56  IAKAKTGSGKTAAFGIGLLSHLDATSSRVQALVLCPTRELADQVGKELRRLARFTDNIKV 115

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +   + G +P   +  +LE   HG AHI++GT     D ++   L L     +++DE  R
Sbjct: 116 LT--LCGGVPFGPQLGSLE---HG-AHIVVGTPGRILDHLRRGSLDLTCLQTLVLDEADR 169

Query: 406 F---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLG------DIDISKITEKPAG 454
               G Q  +     AT      LL +AT  P  +   S         + + ++ ++ A 
Sbjct: 170 MLDMGFQDEISALIDATPKKKQTLLFSAT-YPEAIAAMSATIQHEPVAVSVDEVHDESA- 227

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSLHE 512
              I+ V+  +++ +E  E +  +L   +       C    E +E     V   F++L  
Sbjct: 228 ---IEQVLYEVDK-EERTEAVARILGHYRPESTLVFCNTKIECQEVADALVKRGFSAL-- 281

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                   IHG +   +++ V+  F N +  +L+AT V   G+D+ + + +I  N E   
Sbjct: 282 -------AIHGDLEQRERDQVLVRFANKSVSVLVATDVAARGLDIKELAAVI--NYELSR 332

Query: 573 LAQLHQLR-GRVGRGEE 588
             ++H  R GR GR  E
Sbjct: 333 DPEIHIHRIGRTGRAGE 349


>gi|322698074|gb|EFY89847.1| eukaryotic initiation factor 4A-12 [Metarhizium acridum CQMa 102]
          Length = 402

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 138/341 (40%), Gaps = 57/341 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q  AI  + +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 50  SPSAVQSRAIVQVCKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 103

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + + ++ +GQ HI+ GT     D
Sbjct: 104 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVG---EDIRKLDYGQ-HIVSGTPGRVAD 159

Query: 389 SIQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L      ++++DE       G ++++    +   P   V++++AT     L +T
Sbjct: 160 MIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMT 219

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +       K    P        V I + R +  +E LK      +K  W    + +  ++
Sbjct: 220 T-------KFMTDP--------VRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDT 264

Query: 499 ----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T
Sbjct: 265 LTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLIST 324

Query: 549 TVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 325 DVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 360


>gi|307173630|gb|EFN64481.1| DEAD-box helicase Dbp80 [Camponotus floridanus]
          Length = 482

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 134/327 (40%), Gaps = 68/327 (20%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P++ QE+A+  +L D  Q      I Q   G+GKT   ++AM + V+      Q + ++
Sbjct: 117 APSRIQETALPTLLADPPQN----MIAQSQSGTGKTAAFVLAMLSRVDTTKDYPQVLCLS 172

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K ++    I       +  A R + + R +    HIIIGT     D
Sbjct: 173 PTYELAIQTGEVAAKMSRFCPEI------KIKYAVRGEEISRGSKITEHIIIGTPGKVLD 226

Query: 389 SIQYYKLI--------------LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
             Q +K                ++I  + H+    +  KL  +     ++  +AT  P  
Sbjct: 227 WGQKFKFFDLSKISVFVLDEADVMIATQGHQDQCIRIHKLLPRTC--QMMFFSATYEPEV 284

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    +       I   P        +II + R  E ++ +K       + Y  C  ++E
Sbjct: 285 MNFAEI-------IVSNP--------IIIKLLRQQESLDNIK-------QYYIKCKNVDE 322

Query: 495 KKE--SNFRSVVERFNSL---HEHFTSS------------IAIIHGRMSDIDKESVMDSF 537
           K    +N   V+    ++   H   T+S            +AI+ G ++   + SV+D F
Sbjct: 323 KYTAITNIYGVITIGQAIIFCHTKKTASWLAEKMTRDGHAVAILSGDLTVEQRISVLDRF 382

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIII 564
           + G  K+LI T V+  GIDV   +I++
Sbjct: 383 RAGLEKVLITTNVLARGIDVEQVTIVV 409


>gi|295100690|emb|CBK98235.1| primosomal protein N' [Faecalibacterium prausnitzii L2-6]
          Length = 753

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 89/207 (42%), Gaps = 14/207 (6%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+N P + T  Q++A   +L  +        +L G  GSGKTLV L  +   +  G +A+
Sbjct: 205 LKNEPITLTAQQQAAYDALLPGLEDTAPHSALLYGVTGSGKTLVFLKLIERCLALGRRAL 264

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P I +  Q       ++ +     V +    +    R    + I  G A I++GT +
Sbjct: 265 VLVPEISLTPQMILRLKSRFGRR----VAVQHSALNHTERLLQWQMIQDGGADIVVGTRS 320

Query: 385 LFQDSIQYYKLILVIVDEQH--------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
                ++   L+++  +++H        R+  Q+  +         +LL +ATP   +  
Sbjct: 321 AVFAPLESIGLVIIDEEQEHTYRSESAPRYAAQEVARQRAAENGSLLLLASATPSTESFY 380

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVII 463
               G   + ++T++  G  P+ +V I
Sbjct: 381 AAQNGRTQLVRLTQRYGG-NPLPSVQI 406


>gi|257463053|ref|ZP_05627455.1| ATP-dependent DNA helicase recQ [Fusobacterium sp. D12]
 gi|317060657|ref|ZP_07925142.1| ATP-dependent DNA helicase recQ [Fusobacterium sp. D12]
 gi|313686333|gb|EFS23168.1| ATP-dependent DNA helicase recQ [Fusobacterium sp. D12]
          Length = 591

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 154/372 (41%), Gaps = 58/372 (15%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           K IL  + Q   +L IL    G GK++   I    A+   G  ++++P+  L +   + +
Sbjct: 23  KIILDSVFQGKEVLGIL--TTGGGKSICYQIP---ALLFEGLTLVISPLISLMKDQVDAL 77

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLI 396
           K     +  +   +    P+ +RR  + ++  G+  I+  T     +  F   +Q  K+ 
Sbjct: 78  KMVGVKSAFLNSTLK---PEEYRR-LVGKVIRGEIKILYVTPERLLNENFVTLMQKIKIS 133

Query: 397 LVIVDEQH---RFGVQQRL----------KLTQKATAPHVLLMTATPIPRTL--VLTSLG 441
           L+ VDE H   ++G   R           KL QK     +L +TAT  P+    +L  L 
Sbjct: 134 LLAVDEAHCISQWGHDFRKSYLGIPNFIGKLRQKV---QILALTATATPKVQEDILEKL- 189

Query: 442 DIDISKITEKPAGRKPIKTVI----IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +I  + I +    RK +   +    +P   + + +++     S+G+     C        
Sbjct: 190 NIPNASIYQGSFNRKNLYFRVERGKVPEAYVADYLKK-----SQGEAGIVYC-------- 236

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S  +SV   ++ L E    S+   HG M   ++E   ++F     ++++AT    +GID 
Sbjct: 237 STRKSVDSMYSYLKEIRGYSVGKYHGGMEKQEREESQNNFLQDKLQVMVATNAFGMGIDK 296

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            +   +I  N     L   +Q  GR GR    +  ILLY       +  R  + KN E  
Sbjct: 297 SNVRFVIHANLPG-DLESYYQEAGRAGRDGGQAEAILLYQE--EDIATQRFFIEKNEE-- 351

Query: 618 FLIAEEDLKQRK 629
               EED K+ K
Sbjct: 352 ---MEEDFKKEK 360


>gi|225853248|ref|YP_002733481.1| primosome assembly protein PriA [Brucella melitensis ATCC 23457]
 gi|256045400|ref|ZP_05448294.1| primosome assembly protein PriA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256114368|ref|ZP_05455101.1| primosome assembly protein PriA [Brucella melitensis bv. 3 str.
           Ether]
 gi|256263264|ref|ZP_05465796.1| DEAD/DEAH box helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|260565708|ref|ZP_05836191.1| DEAD/DEAH box helicase [Brucella melitensis bv. 1 str. 16M]
 gi|265991829|ref|ZP_06104386.1| primosome assembly protein PriA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265995668|ref|ZP_06108225.1| primosome assembly protein PriA [Brucella melitensis bv. 3 str.
           Ether]
 gi|225641613|gb|ACO01527.1| primosomal protein N' [Brucella melitensis ATCC 23457]
 gi|260151081|gb|EEW86176.1| DEAD/DEAH box helicase [Brucella melitensis bv. 1 str. 16M]
 gi|262766952|gb|EEZ12570.1| primosome assembly protein PriA [Brucella melitensis bv. 3 str.
           Ether]
 gi|263002785|gb|EEZ15188.1| primosome assembly protein PriA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263093228|gb|EEZ17325.1| DEAD/DEAH box helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409807|gb|ADZ66872.1| primosome assembly protein PriA [Brucella melitensis M28]
 gi|326539525|gb|ADZ87740.1| primosomal protein N' [Brucella melitensis M5-90]
          Length = 744

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 7/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           ++ Q++A + + + +      + +L G  GSGKT V   A+A A++AG Q +I+ P   L
Sbjct: 212 SQDQQAAAEMLSEAVEAGGFSVSLLDGVTGSGKTEVYFEAVAKALDAGRQVLILLPEIAL 271

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            QQ   F+ ++             ++    R +   ++A G   ++ G   ALF   + +
Sbjct: 272 TQQ---FLDRFHDRFGAKPAEWHSDLAPRTRERVWRQVAEGTVRVVAGARSALF---LPF 325

Query: 393 YKLILVIVDEQHRFGVQQ 410
            +L L++VDE+H    +Q
Sbjct: 326 KELGLIVVDEEHDPAYKQ 343


>gi|161619724|ref|YP_001593611.1| primosome assembly protein PriA [Brucella canis ATCC 23365]
 gi|254703570|ref|ZP_05165398.1| primosome assembly protein PriA [Brucella suis bv. 3 str. 686]
 gi|260568875|ref|ZP_05839343.1| DEAD/DEAH box helicase [Brucella suis bv. 4 str. 40]
 gi|261754203|ref|ZP_05997912.1| primosome assembly protein PriA [Brucella suis bv. 3 str. 686]
 gi|161336535|gb|ABX62840.1| primosomal protein N' [Brucella canis ATCC 23365]
 gi|260154259|gb|EEW89341.1| DEAD/DEAH box helicase [Brucella suis bv. 4 str. 40]
 gi|261743956|gb|EEY31882.1| primosome assembly protein PriA [Brucella suis bv. 3 str. 686]
          Length = 744

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 7/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           ++ Q++A + + + +      + +L G  GSGKT V   A+A A++AG Q +I+ P   L
Sbjct: 212 SQDQQAAAEMLSEAVEAGGFSVSLLDGVTGSGKTEVYFEAVAKALDAGRQVLILLPEIAL 271

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            QQ   F+ ++             ++    R +   ++A G   ++ G   ALF   + +
Sbjct: 272 TQQ---FLDRFHDRFGAKPAEWHSDLAPRTRERVWRQVAEGTVRVVAGARSALF---LPF 325

Query: 393 YKLILVIVDEQHRFGVQQ 410
            +L L++VDE+H    +Q
Sbjct: 326 KELGLIVVDEEHDPAYKQ 343


>gi|113461266|ref|YP_719335.1| primosome assembly protein PriA [Haemophilus somnus 129PT]
 gi|112823309|gb|ABI25398.1| replication restart DNA helicase PriA [Haemophilus somnus 129PT]
          Length = 730

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 10/138 (7%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-AVIMAPIGILA 334
           +QE A+  + Q   Q   +  +L+G  GSGKT + L  +   ++   Q  V+++ IG+  
Sbjct: 202 NQEQALA-LSQLTFQSGFICWLLEGVTGSGKTEIYLQFIEEILQQEKQILVLVSEIGLTP 260

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYY 393
           Q     ++++     I ++++  N+    R K  +R  +G++ +IIGT  ALF     + 
Sbjct: 261 QT----VQRFQARFNIEIDVLHSNLNDNQRLKVWQRSKNGESAVIIGTRSALF---TPFK 313

Query: 394 KLILVIVDEQHRFGVQQR 411
           +L L+IVDE+H    +Q+
Sbjct: 314 QLGLIIVDEEHDLSFKQQ 331


>gi|320195643|gb|EFW70268.1| ATP-dependent RNA helicase DbpA [Escherichia coli WV_060327]
          Length = 457

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 127/326 (38%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                  K  I  + R+        + L +       C       + + +SV +  N + 
Sbjct: 219 QFYETSSKGKIPLLQRL--------LSLHQPSSCVVFC-----NTKKDCQSVCDALNEVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S    +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 QSALS----LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELVVNFELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|189024881|ref|YP_001935649.1| primosome assembly protein PriA [Brucella abortus S19]
 gi|189020453|gb|ACD73175.1| DEAD/DEAH box helicase [Brucella abortus S19]
          Length = 733

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 7/132 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           ++ Q++A + + + +      + +L G  GSGKT V   A+A A++AG Q +I+ P   L
Sbjct: 201 SQDQQAAAEMLSEAVEAGGFSVSLLDGVTGSGKTEVYFEAVAKALDAGRQVLILLPEIAL 260

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            QQ   F+ ++             ++    R +   ++A G   ++ G   ALF   + +
Sbjct: 261 TQQ---FLDRFHDRFGAKPAEWHSDLAPRTRERVWRQVAEGTVRVVAGARSALF---LPF 314

Query: 393 YKLILVIVDEQH 404
            +L L++VDE+H
Sbjct: 315 KELGLIVVDEEH 326


>gi|123474251|ref|XP_001320309.1| eukaryotic translation initiation factor [Trichomonas vaginalis G3]
 gi|121903112|gb|EAY08086.1| eukaryotic translation initiation factor, putative [Trichomonas
           vaginalis G3]
          Length = 424

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 144/340 (42%), Gaps = 36/340 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAVEAGGQAVIMA 328
            P+  Q  +IK IL      NR + I Q   G+GKT    + ++      +   QA+++A
Sbjct: 62  GPSDIQSLSIKPILM-----NRCV-IAQAQSGTGKTGAFAIGILNRIDTTQPTTQALVLA 115

Query: 329 PIGILAQQ-HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH------GQAHIIIG 381
           P   LA Q +Y F++  ++   + VE+  G    A  +   +   H      G+A  +I 
Sbjct: 116 PTRELATQIYYFFVEIGSKMADLKVELFKGGNSVADDQAKAQECPHIAVSTPGRALDLIS 175

Query: 382 THALFQDSIQYYKLILVIVDEQHRFG---VQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
              L  ++IQ    I  I +     G   + Q  ++ +        L+ +   P+ ++  
Sbjct: 176 KGYLRCENIQ----IACIDEADEMLGEGFISQIKEIFEYLNKDIQFLLFSATFPKEILSI 231

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                 I +    P  +  +K  ++ +  I +    ++  +++      I   +  +K  
Sbjct: 232 ------IDQFMNDPV-KILVKAEMLTLEGIKQFYVNVETSVNKFPTLLDIYGSLSIQKAV 284

Query: 499 NFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F +  E    L + F +   +I+ IHG M   +++ +M  F+ G  + L++T ++  GI
Sbjct: 285 IFANSKETVEYLQKSFEANEFNISAIHGGMEQAERDRIMHQFRTGNTRALVSTDLLARGI 344

Query: 556 DVVDASIIIIENAEHFGLAQLHQL--RGRVGR-GEEISSC 592
           DV   +++I     +     LH++   GR GR G  I+ C
Sbjct: 345 DVQQITLVINFELPNTAENYLHRIGRSGRYGRKGIAINIC 384


>gi|114051321|ref|NP_001039653.1| eukaryotic initiation factor 4A-III [Bos taurus]
 gi|154147644|ref|NP_001093663.1| eukaryotic initiation factor 4A-III [Sus scrofa]
 gi|157821621|ref|NP_001093628.1| eukaryotic initiation factor 4A-III [Rattus norvegicus]
 gi|126308661|ref|XP_001370945.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction
           Complex With A Trapped Dead-Box Helicase Bound To Rna
           [Monodelphis domestica]
 gi|109825494|sp|Q2NL22|IF4A3_BOVIN RecName: Full=Eukaryotic initiation factor 4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|123780398|sp|Q3B8Q2|IF4A3_RAT RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|251764755|sp|A6M931|IF4A3_PIG RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|77748037|gb|AAI05876.1| Eukaryotic translation initiation factor 4A, isoform 3 [Rattus
           norvegicus]
 gi|84708898|gb|AAI11185.1| Eukaryotic translation initiation factor 4A, isoform 3 [Bos taurus]
 gi|85792296|gb|ABC84196.1| eukaryotic translation initiation factor 4A isoform 3 [Sus scrofa]
 gi|149054966|gb|EDM06783.1| rCG33565, isoform CRA_a [Rattus norvegicus]
 gi|296476097|gb|DAA18212.1| eukaryotic initiation factor 4A-III [Bos taurus]
          Length = 411

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 61  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 114

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 115 TRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 167

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   P   V+L++AT     L 
Sbjct: 168 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 227

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEG 482
           +T+    D  +I  K      + IK   + + R +              I +  +  +  
Sbjct: 228 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 287

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 288 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 328

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 329 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 370


>gi|325860554|ref|ZP_08173658.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|325481939|gb|EGC84968.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
          Length = 572

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 151/354 (42%), Gaps = 58/354 (16%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL+     N +L + Q   G+GKT   L+ + + +  GG        VIM
Sbjct: 25  TPVQEKCIPEILKG----NDVLGVAQ--TGTGKTAAYLLPVLSKLADGGYPESAINCVIM 78

Query: 328 APIGILAQQHYEFIK--KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +P   LAQQ  + ++   Y  +    V +  GN    + ++ L+ ++ G A ++I T   
Sbjct: 79  SPTRELAQQIDQAMQGFAYYLDGVSCVAVYGGNDGNRYDQE-LKSLSLG-ADVVIATPGR 136

Query: 386 F-----QDSIQYYKLILVIVDEQHRF---GVQQR-LKLTQKATAPHVLLMTATPIPRT-- 434
           F       ++   K+   I+DE  R    G  +  + + +K  A    +M +  +P+   
Sbjct: 137 FISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLPASCQTIMFSATMPKKIE 196

Query: 435 -LVLTSLGD-IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            L  T L + ++I     KPA                E I ++  V  E +K   I    
Sbjct: 197 ELAKTLLKNPVEIKLAVSKPA----------------EKIHQMAYVCYETQKMGIIKDIF 240

Query: 493 EEKKESNFRSVVERFNSLHE--HFTSSIAIIH---GRM-SDIDKE---SVMDSFKNGTCK 543
              K  + + V+    S  +     +S+   H   G M SD+D+E    VM  FK+G   
Sbjct: 241 ---KAGDLKRVIIFSGSKQKVKQIAASLGRKHINCGEMHSDLDQEQRNDVMFKFKSGQID 297

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +L+AT ++  GID+ D +++I  +  H     +H++ GR  R +     I   +
Sbjct: 298 VLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRI-GRTARADRDGKAITFVN 350


>gi|312221996|emb|CBY01936.1| hypothetical protein [Leptosphaeria maculans]
          Length = 602

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 145/354 (40%), Gaps = 42/354 (11%)

Query: 300 GDVGSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            + GSGKTL   +     + +       G +AVI++P   LA Q Y+ +        + V
Sbjct: 232 AETGSGKTLAFGVPCVRYISSLPKEKRKGIKAVIVSPTRELAVQIYDQLVALANPAGLEV 291

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF- 406
             + G +P+  +  A  +     AHI++ T     D     S    K   V++DE  R  
Sbjct: 292 VCVYGGVPKDPQVAACRK-----AHIVVATPGRLNDLIGDGSADLSKAEYVVLDEADRML 346

Query: 407 --GVQQRLK--LTQKATAPHVLLMTAT--PIPRTLVLT--------SLGDIDISKITEKP 452
             G ++ ++  ++Q       L+ TAT  P  R L  T        ++GD ++S      
Sbjct: 347 DKGFEEPIRQIVSQTPKKRQTLMFTATWPPSVRELASTFMNSPVKITIGD-NVSGELRAN 405

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              K +  VI P  +   +I+ LK   S   K   I      KKE+     +E F  +  
Sbjct: 406 VRIKQVVEVIDPHAKEQRLIQLLKQYQSGKNKDDRILVFCLYKKEA---VRIENFIRMKG 462

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                +  IHG ++   + + + +FK G   LL+AT V   G+D+    ++I        
Sbjct: 463 F---RVGGIHGDLTQEKRSASLAAFKEGHVPLLVATDVAARGLDIPAVKVVINVTFPLTA 519

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
              +H++ GR GR  +    I  +       S + ++VLK      L+ EE +K
Sbjct: 520 EDYVHRI-GRTGRAGKEGLAITFFTEHDKGLSGSLINVLKAANQ--LVPEELMK 570


>gi|310659806|ref|YP_003937527.1| ATP-dependent DNA helicase [Clostridium sticklandii DSM 519]
 gi|308826584|emb|CBH22622.1| ATP-dependent DNA helicase [Clostridium sticklandii]
          Length = 600

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG M+  ++++  D F  G  +L++AT    +GID  D   +I  N     +   +Q  G
Sbjct: 259 HGGMNSEERQNNQDEFILGNKRLIVATNAFGMGIDKPDVRFVIHYNMPK-NMEAYYQEAG 317

Query: 582 RVGRGEEISSCILLY 596
           R GR  E S CILLY
Sbjct: 318 RAGRDGEKSDCILLY 332


>gi|301772834|ref|XP_002921834.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic initiation factor
           4A-III-like [Ailuropoda melanoleuca]
          Length = 417

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 67  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 120

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 121 TRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 173

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   P   V+L++AT     L 
Sbjct: 174 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 233

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEG 482
           +T+    D  +I  K      + IK   + + R +              I +  +  +  
Sbjct: 234 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 293

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 294 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 334

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 335 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 376


>gi|301093191|ref|XP_002997444.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans
           T30-4]
 gi|262110700|gb|EEY68752.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans
           T30-4]
          Length = 411

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 149/349 (42%), Gaps = 75/349 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ A+K IL           I Q   G+GKT    +++   ++      QA+I+AP
Sbjct: 61  PSAIQQRAVKPILLGHDC------IAQAQSGTGKTATFAVSILQKIDINLKETQALILAP 114

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH------GQAHIIIGTH 383
              LAQQ  + +        + V    G        + L++  H      G+   +I   
Sbjct: 115 TRELAQQIVKVVVAIGDYMSVQVHACVGGTAVRDDIRTLQQGVHIVVGTPGRVGDMINRR 174

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLK-----LTQKATAPHVLLMTATPIPRTLVLT 438
           AL  D ++ +  +L   DE    G + ++      L +K     V L +AT +P      
Sbjct: 175 ALRTDEVKMF--VLDEADEMLSRGFKDQIYEVFRFLPEKV---QVALFSAT-MP------ 222

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               +D+ ++T +   R+PI+ ++          +R ++ L EG K ++I    EE K  
Sbjct: 223 ----LDVLEVTHRFM-REPIRILV----------KRDELTL-EGIKQFFIAIDREEWKFD 266

Query: 499 NFRSVVE---------------RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNG 540
               + E               + + L E   S   +++ +HG M   +++ +M  F++G
Sbjct: 267 TLCDLYETLTITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMEQRERDIIMREFRSG 326

Query: 541 TCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
           + ++LI T ++  GIDV   S++I      N E++    +H++ GR GR
Sbjct: 327 SSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY----IHRI-GRSGR 370


>gi|260776311|ref|ZP_05885206.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607534|gb|EEX33799.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 483

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 149/349 (42%), Gaps = 52/349 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------AV 325
           P+  QE AI  +L   + K+ M        G+GKT    + +   ++ G +       A+
Sbjct: 24  PSPIQEQAIPAVL---AGKDVMA---AAQTGTGKTAGFTLPILERLDNGTRVKGNHVRAL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHIIIG 381
           ++ P   LA Q  E + KY++  ++   ++ G +   PQ  + RK  +        +++ 
Sbjct: 78  VLTPTRELAAQVQENVFKYSRYQRLTSNVVFGGVKINPQMTKLRKGTD--------VLVA 129

Query: 382 THALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TL 435
           T         Q++I + +L ++++DE  R      ++  +K       ++   P  R  L
Sbjct: 130 TPGRLLDLYQQNAINFSQLEVLVLDEADRMLDMGFIRDIRK-------ILALLPEKRQNL 182

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I ++  K     P++  + P N     IE+      + KKA  +   I   
Sbjct: 183 LFSATFSAEIRELA-KGLVNDPVEVSVNPENSTAVTIEQSIYPADKRKKAPMLVKLI--- 238

Query: 496 KESNFRSVVERFNSLH-----EHFTS----SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           K+ ++R V+    + H      H+ +    + A IHG  S   +   +  FK+G  ++L+
Sbjct: 239 KDGDWRQVLVFSRTKHGANRLSHYLNDQGITAAPIHGNKSQGARTKALADFKSGEVRVLV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           AT +   GID+     ++     H     +H++ GR GR  E+   I L
Sbjct: 299 ATDIAARGIDIPQLPQVVNFELPHVAEDYVHRI-GRTGRAGEVGKAISL 346


>gi|239832883|ref|ZP_04681212.1| primosomal protein N' [Ochrobactrum intermedium LMG 3301]
 gi|239825150|gb|EEQ96718.1| primosomal protein N' [Ochrobactrum intermedium LMG 3301]
          Length = 740

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 7/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           ++ Q++A + + + +      + +L G  GSGKT V   A+A A+E G Q +I+ P   L
Sbjct: 208 SEDQQAAAEMLSEAVEAGGFSVSLLDGVTGSGKTEVYFEAVAKAIEQGRQVLILLPEIAL 267

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            QQ   F+ ++             ++    R +   +IA G   ++ G   ALF   + +
Sbjct: 268 TQQ---FLDRFHDRFGAKPAEWHSDLAPRTRERVWRQIAEGTVRVVAGARSALF---LPF 321

Query: 393 YKLILVIVDEQHRFGVQQ 410
            +L L++VDE+H    +Q
Sbjct: 322 KELGLIVVDEEHDPAYKQ 339


>gi|255072433|ref|XP_002499891.1| predicted protein [Micromonas sp. RCC299]
 gi|226515153|gb|ACO61149.1| predicted protein [Micromonas sp. RCC299]
          Length = 394

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 136/325 (41%), Gaps = 69/325 (21%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT +  +A+   ++      QA++++P   LA Q  +          + V 
Sbjct: 62  IAQAQSGTGKTSMISLALCQMLDTNTREVQALVLSPTRELATQTEKTALALGNFMSVQVH 121

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        + + ++ HG  HI+ GT     D I+   L        IL   DE   
Sbjct: 122 ACIGGRSIG---EDIRKLDHG-VHIVSGTPGRVFDMIKRRNLRTRNIKALILDEADEMLN 177

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G ++++    +   P   V+L++AT     L +T+       K    P           
Sbjct: 178 KGFKEQIYDVYRYLPPETQVVLVSATLPQEVLEMTT-------KFMTDPV---------- 220

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL------------- 510
              RI  +++R ++ L EG K +++     EK+E  F ++ + +++L             
Sbjct: 221 ---RI--LVKRDELTL-EGIKQFFVAV---EKEEWKFDTLCDLYDTLTITQAVIFCNTKR 271

Query: 511 ----------HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
                       +FT  ++ +HG M   +++++M  F+ GT ++LI T V   GIDV   
Sbjct: 272 KVDWLTDKMRQNNFT--VSSMHGDMPQKERDAIMGEFRGGTTRVLITTDVWARGIDVQQV 329

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGR 585
           S++I  +  +     +H++ GR GR
Sbjct: 330 SLVINYDLPNNRENYIHRI-GRSGR 353


>gi|115376248|ref|ZP_01463489.1| heliCase, c-terminal:dead/deah box helicase, n-terminal
           [Stigmatella aurantiaca DW4/3-1]
 gi|310823994|ref|YP_003956352.1| ATP-dependent helicase, dead/deah box family [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366746|gb|EAU65740.1| heliCase, c-terminal:dead/deah box helicase, n-terminal
           [Stigmatella aurantiaca DW4/3-1]
 gi|309397066|gb|ADO74525.1| ATP-dependent helicase, DEAD/DEAH box family [Stigmatella
           aurantiaca DW4/3-1]
          Length = 835

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 101/229 (44%), Gaps = 33/229 (14%)

Query: 392 YYKLILVIVDEQHRF-----GVQQRLKLTQ-KATAPHV--LLMTATPIPRTLVLTSLGDI 443
           +  L  VI DE H       G Q  L L + +  AP V    ++AT       L +LG+ 
Sbjct: 165 FASLRAVIADEWHELLSTKRGTQMELALARLRHFAPSVRTWALSAT-------LANLGEA 217

Query: 444 DISKITEKPAG-------RKPIKTVIIPINRIDEVIERLKVVLSEGKK-AYWICPQIEEK 495
             + +  + A         +PI+   +  +++D       +  S  +K A W+ P+    
Sbjct: 218 ARAGVGTQTAPTLLSAELERPIEVSTLLPDKVDSFPWAGHLGFSMLEKVAAWLDPERSTL 277

Query: 496 KESNFRSVVERFNS----LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
             +N RS  ER+          F + +A+ HG +   ++E V    K+G+ +L++ T+ +
Sbjct: 278 LFTNTRSQAERWYEGLRFARPEFGARLALHHGSIDREERERVEAGLKDGSVRLVVCTSSL 337

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR--GEEISSCILLYHP 598
           ++G+D      ++   +   G+++  Q  GR G   GE   +C LL+ P
Sbjct: 338 DLGVDFGPVERVVQVGSPK-GISRSMQRAGRSGHRPGE---TCRLLFVP 382


>gi|40788956|dbj|BAA04879.2| KIAA0111 [Homo sapiens]
          Length = 412

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 62  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 115

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 116 TRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 168

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   P   V+L++AT     L 
Sbjct: 169 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 228

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEG 482
           +T+    D  +I  K      + IK   + + R +              I +  +  +  
Sbjct: 229 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 288

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 289 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 329

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 330 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 371


>gi|58465419|gb|AAW78518.1| DEAD box RNA helicase-PL10A [Monopterus albus]
          Length = 376

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 151/377 (40%), Gaps = 75/377 (19%)

Query: 246 QFKKEIGIPINVEGK-------------IAQKILRNIPFS----PTKSQESAIKDILQDM 288
            F K   IP+   G              + + I+ NI  S    PT  Q+ AI  I    
Sbjct: 3   NFDKYDDIPVEATGSNCPAHIESFHDVDMGEIIMGNITLSRYTRPTPVQKHAIPII---- 58

Query: 289 SQKNRMLRILQGDVGSGKTLVALI-------------AMAAAVEAGGQ------------ 323
             K R   +     GSGKT   L+             A+ A+  +G +            
Sbjct: 59  --KTRRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGDALQASKNSGQENGRYGRRKQYPI 116

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           ++++AP   LA + Y+  +K+   + +   ++ G      + + LER      H+++ T 
Sbjct: 117 SLVLAPTRELASRIYDEARKFAYRSHVRPCVVYGGADIGQQIRELER----GCHLLVATP 172

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVL---LMTATP 430
               D ++  K  L     +++DE  R     F  Q R  + Q    P  +   +M +  
Sbjct: 173 GRLVDMMERGKTGLEHCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGIRQTMMFSAT 232

Query: 431 IPRTLVLTS---LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            P+ + + +   L D     +    +  + I   ++ +   D+    L ++ + GK++  
Sbjct: 233 FPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLLNATGKESLT 292

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +   +E KK ++    +E F   HE +  +   IHG  S  D+E  +  F++G C +L+A
Sbjct: 293 LV-FVETKKGAD---ALEDF-LYHEGYACTS--IHGDRSQRDREEALHHFRSGRCPILVA 345

Query: 548 TTVIEVGIDVVDASIII 564
           T V   G+D+ +   +I
Sbjct: 346 TAVAARGLDISNVKHVI 362


>gi|79313227|ref|NP_001030693.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|332641918|gb|AEE75439.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 415

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 125/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 80  IQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 139

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 140 ACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMF--VLDEADEM 193

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++    +   P   V + +AT  P  L +T        K   KP        V
Sbjct: 194 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMSKP--------V 238

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 239 RILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 298

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 299 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQ 358

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 359 PENYLHRI-GRSGR 371


>gi|15223841|ref|NP_175549.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative [Arabidopsis thaliana]
 gi|108861889|sp|Q9C8J1|RH34_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 34
 gi|4836949|gb|AAD30651.1|AC006085_24 RNA helicase [Arabidopsis thaliana]
 gi|16604541|gb|AAL24276.1| At1g51380/F11M15_24 [Arabidopsis thaliana]
 gi|18958046|gb|AAL79596.1| At1g51380/F11M15_24 [Arabidopsis thaliana]
 gi|332194539|gb|AEE32660.1| DEAD-box ATP-dependent RNA helicase 34 [Arabidopsis thaliana]
          Length = 392

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 149/345 (43%), Gaps = 67/345 (19%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P++ Q+ A+  IL     K R + I Q   G+GKT +  I++   V       Q ++++P
Sbjct: 45  PSEIQQRALVPIL-----KGRDV-IAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSP 98

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  + I+    +T I      G        K LER      H + GT     D 
Sbjct: 99  SRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLER----GVHAVSGTPGRVYDM 154

Query: 389 ----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPH---VLLMTATPIPRTLVLT 438
               S+Q   + L+++DE       G++ ++    +A  PH   V L++AT +P+     
Sbjct: 155 IKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRAL-PHDIQVCLISAT-LPQ----- 207

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                +I ++TEK     P++ ++ P    DE+         EG K Y++    EE K  
Sbjct: 208 -----EILEMTEKFM-TDPVRILVKP----DELT-------LEGIKQYYVDVDKEEWKFD 250

Query: 499 N---------------FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
                           F +  ++ + L E   SS   ++ +HG     +++ +M+ F++ 
Sbjct: 251 TLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSF 310

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
             ++LIA+ V   GIDV   S +I  +  +     +H++ GR GR
Sbjct: 311 KSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRI-GRAGR 354


>gi|330501488|ref|YP_004378357.1| primosome assembly protein PriA [Pseudomonas mendocina NK-01]
 gi|328915774|gb|AEB56605.1| primosome assembly protein PriA [Pseudomonas mendocina NK-01]
          Length = 739

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 21/190 (11%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  +     Q N  L  L G  GSGKT V L  +   +EAG QA+++ P I +  Q
Sbjct: 207 QRAAVNAVASGWDQFNAFL--LAGVTGSGKTEVYLQLIHQCLEAGKQALVLIPEINLGPQ 264

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
               F +++     ++   +        R  A      G+A IIIGT +     ++   L
Sbjct: 265 TFDRFARRFNARIALLHSAVNDR----ERLDAWLAARDGEADIIIGTRSALFTPMKNPGL 320

Query: 396 ILVIVDEQHRFGVQQRLKL-----------TQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           I  IVDE+H    +Q+  L            ++   P ++L +ATP   +L     G   
Sbjct: 321 I--IVDEEHDASYKQQEGLRYHARDLALVRARQEEVP-IVLGSATPSLESLHNAHTGRYA 377

Query: 445 ISKITEKPAG 454
           + K+T++  G
Sbjct: 378 LLKLTQRAGG 387


>gi|296194577|ref|XP_002745047.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 3
           [Callithrix jacchus]
          Length = 690

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 140/344 (40%), Gaps = 78/344 (22%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+ + A +   G            + +I+AP   L  Q Y   +K++  T 
Sbjct: 300 TGSGKTAAFLLPILAHMMRDGVTASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTC 359

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   +I G     H   ++ +I  G  +I+  T     D I   K+ L     +++DE  
Sbjct: 360 VRAVVIYGGTQLGH---SIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQIKYLVLDEAD 415

Query: 405 R-----FG--------------VQQRLKLTQKATAPH-VLLMTATPIPRTLVLTSLGDID 444
           R     FG               +QR  L   AT P  +  + A  +    +  ++G + 
Sbjct: 416 RMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQV- 474

Query: 445 ISKITEKPAGRKPIKTV--IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
                   A R   +TV  +   ++ ++++E L+ +  E    +     +E KK+++F  
Sbjct: 475 ------GGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVF-----VETKKKADF-- 521

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +  F    +  T+SI   HG     ++E  +  F++G C +L+AT+V   G+D      
Sbjct: 522 -IATFLCQEKISTTSI---HGDREQREREQALGDFRSGKCPVLVATSVAARGLD------ 571

Query: 563 IIIENAEH---FGLAQ-----LHQLRGRVGRGEEISSCILLYHP 598
             IEN +H   F L       +H++ GR GR       I  + P
Sbjct: 572 --IENVQHVINFDLPSTIDEYVHRI-GRTGRCGNTGRAISFFDP 612


>gi|227113216|ref|ZP_03826872.1| primosome assembly protein PriA [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 732

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ +     V+++
Sbjct: 221 LLAGITGSGKTEVYLSVLENVLAQGKQALVLVPEIGLTPQT----IARFRERFNAPVDVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   G+A I+IGT  ALF     + +L L+++DE+H    +Q+
Sbjct: 277 HSALNDSERLAVWLRARSGEAAIVIGTRSALF---TPFARLGLIVIDEEHDSSYKQQ 330


>gi|194068383|dbj|BAG55012.1| vasa [Saccostrea kegaki]
          Length = 422

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 133/324 (41%), Gaps = 43/324 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   ++ +   +   G            QA+++AP   LA Q +   +K+   T 
Sbjct: 20  TGSGKTAAFILPVLTGMMKNGISGSSFSEVQEPQALVVAPTRELAVQIFMDARKFAYGTM 79

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQH 404
           +   ++ G     ++ + +E+      HI++GT     D      I   KL  +I+DE  
Sbjct: 80  LRPVVLYGGTSVGYQLRQVEQ----GTHILVGTPGRLIDIIGKGKISLAKLKYLILDEAD 135

Query: 405 R-----FGVQQRLKLTQKATAPHV---LLMTATPIPRTLVLTS---LGDIDISKITEKPA 453
           R     FG   R  + +  T P      LM +   P+ +   +   L D     +     
Sbjct: 136 RMLDMGFGPDIRKIVEELGTPPKTERQTLMFSATFPKEIQEMAGDFLNDYLFLTVGRVGG 195

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
               +   +  ++R  E   RL  +L+E G +   +   +E+K+ ++F   +  + S + 
Sbjct: 196 ACTDVTQTVFEVDR-QEKRSRLCDILTETGTEKTLVF--VEQKRNADF---LASYLSQNG 249

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
             T+SI   HG     ++E  +  FK G   +LIAT+V   G+D+     +I  +     
Sbjct: 250 FPTTSI---HGDRLQAEREEALRDFKTGKAPVLIATSVAARGLDIPLVKHVINYDLPSSI 306

Query: 573 LAQLHQLRGRVGRGEEISSCILLY 596
              +H++ GR GR   +   +  Y
Sbjct: 307 DEYVHRI-GRTGRCGNLGKAMSFY 329


>gi|189183675|ref|YP_001937460.1| primosome assembly protein PriA [Orientia tsutsugamushi str. Ikeda]
 gi|189180446|dbj|BAG40226.1| primosomal protein N [Orientia tsutsugamushi str. Ikeda]
          Length = 646

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 9/126 (7%)

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYT 345
           D  +K     +LQG  GSGKT V    +  A+  G Q +++ P I + +   + F  ++ 
Sbjct: 130 DAIRKTTGATLLQGITGSGKTEVYFHLIVEALRQGLQVLLLMPEINLASHIAFRFASRFK 189

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH 404
            N      I   ++ +A ++KAL  I   +  ++IGT  ++F   + Y  L L+IVDE+H
Sbjct: 190 FNAV----IWNSSVSKALKKKALRGILTNEIKVVIGTRSSIF---LPYSSLGLIIVDEEH 242

Query: 405 RFGVQQ 410
               +Q
Sbjct: 243 DQSYKQ 248


>gi|125718667|ref|YP_001035800.1| ATP-dependent RNA helicase [Streptococcus sanguinis SK36]
 gi|125498584|gb|ABN45250.1| ATP-dependent RNA helicase, putative [Streptococcus sanguinis SK36]
          Length = 447

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 149/358 (41%), Gaps = 44/358 (12%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAV 318
           Q+ LR++ F   T  QE  I  +L       R L + +   GSGKT   L+ +  M    
Sbjct: 13  QEALRDLNFVEATPVQEKLIPVVLS-----GRDL-VGESKTGSGKTHTFLLPIFQMLDEE 66

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               QAVI AP   LA Q Y+  ++       +I V    G   +A +   LE     Q 
Sbjct: 67  ADSVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGKLE---SSQP 123

Query: 377 HIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           HI+IGT     D ++   L +      +VDE         L +   AT   +    A  +
Sbjct: 124 HIVIGTPGRIYDLVESGDLAIHKAKTFVVDE-----ADMTLDMGFLATVDKI----AGRL 174

Query: 432 PRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGK---- 483
           P+ L           K+  +P  +K    P+   I     I + IE   ++ ++G+    
Sbjct: 175 PKDLQFLVFSATIPQKL--QPFLKKYLSNPVIEQIKTKTVIADTIENW-LLSTKGRDKNA 231

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           + Y I   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN 
Sbjct: 232 QIYQISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|39104462|dbj|BAD04052.1| vasa homologue [Leucopsarion petersii]
          Length = 645

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/334 (20%), Positives = 137/334 (41%), Gaps = 58/334 (17%)

Query: 302 VGSGKTLVALIA-----MAAAVEAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+      MA  V A         +A+I+AP   L  Q +   +K+   T 
Sbjct: 256 TGSGKTAAFLLPILQHLMADGVAASQFSELQEPEALIVAPTRELINQIHLEARKFAYGTC 315

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           +   ++ G +   H+ + L R      +I+ GT     D I   K+ L  +     F + 
Sbjct: 316 VRPVVVYGGVSTGHQIRDLCR----GCNILCGTPGRLLDVINRGKVGLTKL---RYFVLD 368

Query: 410 QRLKLTQKATAPHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK------------ 451
           +  ++      P +  +  +P +P     +TL+ ++    DI K+               
Sbjct: 369 EADRMLDMGFEPDMRRLVGSPGMPTKEDRQTLMFSATYPEDIQKLAADFLKTDYLFLAVG 428

Query: 452 --PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
                   +    + + + D+  + L+++ + G     +   +E K+ ++F   +  F  
Sbjct: 429 IVGGACTDVNQEFVEVTKFDKREKLLELLKTTGTDRTMVF--VETKRLADF---IAAFLC 483

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
             +  T+SI   HG     ++E  +  F++G C +L+AT+V   G+D+ D     ++N  
Sbjct: 484 QEKVPTTSI---HGGREQREREQALGDFRSGKCPVLVATSVAARGLDIPD-----VQNVV 535

Query: 570 HFGLAQ-----LHQLRGRVGRGEEISSCILLYHP 598
           +F L       +H++ GR GR   +   +  + P
Sbjct: 536 NFDLPNNIDEYVHRI-GRTGRCGNLGRAVSFFDP 568


>gi|84385240|ref|ZP_00988272.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus 12B01]
 gi|84379837|gb|EAP96688.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus 12B01]
          Length = 459

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 133/310 (42%), Gaps = 39/310 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I QG  GSGKT    + +   +       Q++++ P   LA Q  + I+   +    I V
Sbjct: 45  IGQGKTGSGKTAAFGLGVLQNLRVKRFRVQSLVLCPTRELADQVAKEIRTLARGIHNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G MP   +  +LE   HG AHI++GT     D ++  ++ L     +++DE  R  
Sbjct: 105 LTLCGGMPMGPQIGSLE---HG-AHILVGTPGRILDHLERERIDLSELNTLVLDEADRML 160

Query: 407 --GVQQRLKLTQKATAP---HVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPI 458
             G Q  L    +A AP     LL +AT  P+ +   +   + + ++ K+ E       I
Sbjct: 161 EMGFQDALDAVIEA-APKDRQTLLFSAT-FPKQIKSVADRIMNNPEMVKV-ESTHDHSSI 217

Query: 459 KTVIIPINRIDEVIERLKVVL--SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +     +   +   + L+++L   + + A   C         N +  V+  N    H   
Sbjct: 218 QQHFYKVEGTEARDDALELMLLHHQPESAVVFC---------NTKKEVQNVNDELSHRGF 268

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S+  +HG M   +++  +  F N T  +L+AT V   G+DV +   +   N E     ++
Sbjct: 269 SVIELHGDMEQRERDQALVQFSNKTISILVATDVAARGLDVDNLDAVF--NFELSRDPEV 326

Query: 577 HQLR-GRVGR 585
           H  R GR GR
Sbjct: 327 HVHRIGRTGR 336


>gi|262282485|ref|ZP_06060253.1| DEAD RNA helicase [Streptococcus sp. 2_1_36FAA]
 gi|262261776|gb|EEY80474.1| DEAD RNA helicase [Streptococcus sp. 2_1_36FAA]
          Length = 371

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 172/401 (42%), Gaps = 53/401 (13%)

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           +LA  + L++++K F      P + + K     L ++ FS   S +   ++I + +S   
Sbjct: 1   MLALDLRLIMIKKYF------PNSWQDK-----LEDLGFSELTSIQ---EEIFEPISSGK 46

Query: 293 RMLRILQGDVGSGKTLVALIA--MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ---- 346
            +L I     G+GKTL  L    +    +   Q +I+AP   LA Q +E  K +      
Sbjct: 47  SVLGI--SPTGTGKTLAYLFPCLLKLTPKKAQQLLILAPNTELAGQIFEVCKSWADSLGL 104

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           NTQ+    I+G    + +++ +ER+  G   IIIGT     + ++  K+ ++ +D     
Sbjct: 105 NTQLF---ISG----SSQKRQIERLKKG-PEIIIGTPGRIFELVKLKKIKMMNIDTIVLD 156

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGRKPIKTVIIPI 465
              Q L  +Q      +  +   P    LV +++    D  KI +         T+ I I
Sbjct: 157 EFDQLLSDSQYHFVDKI--VRYAPRDHQLVYMSATAKFDHDKIAKD--------TLKISI 206

Query: 466 -NRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
            N++ + I+   + + +  K   +     +EE +   F + +    S  E      A   
Sbjct: 207 DNQVLDNIQHFYIQVEKRDKVELLRKLSNVEEFRGLVFFNALSDLGSAEEKLQYREANAV 266

Query: 523 GRMSDID---KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              SDI+   ++ ++D FK     LL+AT ++  GID +D+   ++       L      
Sbjct: 267 SLASDINVKFRKVILDKFKEHQITLLLATDLVARGID-IDSLECVVNYELPRDLETYTHR 325

Query: 580 RGRVGR-GEEISSCILLYHP----PLSKNSYTRLSVLKNTE 615
            GR GR G+E +   L+ HP     L K +  R  VLKN E
Sbjct: 326 SGRTGRMGKEGNVITLISHPEELKTLKKYASVREIVLKNQE 366


>gi|255524804|ref|ZP_05391754.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|296188659|ref|ZP_06857047.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
 gi|255511471|gb|EET87761.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|296046923|gb|EFG86369.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
          Length = 382

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 145/323 (44%), Gaps = 45/323 (13%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAV---IMAPIGILAQQHYEFIKKYTQNTQIIVE-- 353
           + + GSGKTL  L  +   ++   +AV   I+ P   LA Q  + IK   ++++I V+  
Sbjct: 47  EAETGSGKTLAYLAPIFQNIDTNSKAVQAFILTPTHELAIQVNDVIKTLAEDSEIPVKSA 106

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRF-- 406
            I GN+   + +K +E + + + HI++G+       I+  K+       ++VDE  +   
Sbjct: 107 AIIGNI---NIKKQIENLKNNKPHIVVGSTGRILQLIKLKKMKAHMIKTIVVDEADKLLD 163

Query: 407 -----GVQQRLKLTQKATAPHVLLMTATPIPRTLVL--TSLGDIDISKITEKPAGRKPIK 459
                 V+  +K T K     ++  +AT   RTL +  T + + ++ +   K +  + I+
Sbjct: 164 KNNVEDVKAIIKTTLKDR--QLMFFSATIDERTLDVAKTLMKEYEVIRTQGKTSMNENIE 221

Query: 460 TVIIPINRIDEVIERLKV--VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            +     + D+++   KV  +L+  K   ++       K      + E+ N    H   S
Sbjct: 222 HMCFKCEQRDKILILRKVFHILNPKKAIVFV------NKPDEIEVLTEKLNY---HGIKS 272

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGL 573
            +I +G      ++  ++ FK G   LL+A+ +   G+D+ D   I    I E+ +++  
Sbjct: 273 ESI-YGTADKEVRKRALEDFKAGKINLLVASDIAARGLDIQDVECIFSYDIPEDTDNY-- 329

Query: 574 AQLHQLRGRVGRGEEISSCILLY 596
             LH+  GR  R  +    I ++
Sbjct: 330 --LHRA-GRTARAGKAGKSICIF 349


>gi|209880596|ref|XP_002141737.1| eukaryotic translation initiation factor 4A [Cryptosporidium muris
           RN66]
 gi|209557343|gb|EEA07388.1| eukaryotic translation initiation factor 4A, putative
           [Cryptosporidium muris RN66]
          Length = 404

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 138/344 (40%), Gaps = 29/344 (8%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N++G + + I       P+  Q+  +K IL           I Q   G+GKT   +IA 
Sbjct: 36  LNLDGNLLRGIFAYGFEKPSAIQQRGVKPILDGYDT------IGQAQSGTGKTATFVIAA 89

Query: 315 AAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
              ++      Q +++AP   LAQQ  +          +      G       R  + ++
Sbjct: 90  LQKIDYSLNACQVLLLAPTRELAQQIQKVALALGDYCDLRCHACVGG---TSVRDDMNKL 146

Query: 372 AHGQAHIIIGTHALFQDSIQ--YYK---LILVIVDEQHR-----FGVQQRLKLTQKATAP 421
            +G  H+++GT     D +   Y +   L L I+DE        F +Q      +     
Sbjct: 147 KNG-VHMVVGTPGRVFDMLDKGYLRVDHLKLFILDEADEMLSRGFKLQIHDIFKKLPQDV 205

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            V L +AT     L LT+    D  +I  K       +  +  I +    +E+ +  L+ 
Sbjct: 206 QVALFSATMPNEILHLTTQFMRDPKRILVKQE-----ELTLEGIRQYYVAVEKDEWKLAT 260

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
               Y     ++     N R  V+R          + + +HG M   D+E +M  F++G+
Sbjct: 261 LVDLYETLTIVQAIIYCNTRIRVDRLTKQMTDRDFTCSCMHGDMDQKDREVIMRQFRSGS 320

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            ++LI T ++  GIDV   S++I  +        +H++ GR GR
Sbjct: 321 SRVLITTDLLARGIDVQQVSLVINYDLPVSAETYIHRI-GRSGR 363


>gi|195397525|ref|XP_002057379.1| GJ17053 [Drosophila virilis]
 gi|194147146|gb|EDW62865.1| GJ17053 [Drosophila virilis]
          Length = 1244

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 157/366 (42%), Gaps = 50/366 (13%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AAA 317
           +LR + F  PT  Q  AI  I   MS ++ ++ I +   GSGKTL  ++ M        +
Sbjct: 551 VLRKLGFEKPTPIQCQAIPAI---MSGRD-LIGIAK--TGSGKTLAFILPMFRHILDQPS 604

Query: 318 VEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           +E G  A+  IMAP   L  Q  + I+K++++  +    + G    + +   L+R     
Sbjct: 605 LEDGDGAIAIIMAPTRELCMQIGKDIRKFSRSLGLRPVCVYGGTGISEQIAELKR----G 660

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF---GVQ-QRLKLTQKATAPHV 423
           A II+ T     D +           ++  V++DE  R    G + Q +++         
Sbjct: 661 AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQ 720

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +M +   PR +   +   +           +KP++ ++   + + + +E+  V+LS+  
Sbjct: 721 TVMFSATFPRQMEALARRIL-----------KKPVEVIVGGRSVVCKDVEQNVVILSDEA 769

Query: 484 KAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDS 536
           K + +   +   +E+     F    E  + L      +      +HG +   D++S +  
Sbjct: 770 KFFKLLELLGVYQETGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIID 829

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR     S     
Sbjct: 830 FKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRC-GRTGRAGNKGSAYTFI 888

Query: 597 HPPLSK 602
            P  S+
Sbjct: 889 TPEQSR 894


>gi|85792253|gb|ABC84194.1| eukaryotic translation initiation factor 4A isoform 2 [Sus scrofa]
          Length = 407

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 128/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 74  IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 133

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 134 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 190

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK  T+  V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 191 RGFKDQIYEIFQKLNTSIQVVLLSAT-MP----------TDVLEVTKKFM-RDPIR---I 235

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 236 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHA 295

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV    ++I
Sbjct: 296 RDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVPLVI 346


>gi|56413419|ref|YP_150494.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362342|ref|YP_002141979.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127676|gb|AAV77182.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197093819|emb|CAR59302.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
          Length = 457

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 144/326 (44%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVSLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF 406
              + G  P   +R +L+       HII+ T       L ++++    L ++++DE  R 
Sbjct: 105 T--LCGGQPFGAQRDSLQH----APHIIVATPGRQLDHLQKETVSLDALHILVMDEADRM 158

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                L +        V+   A    +TL+ ++     I+ I+    GR   + + I I+
Sbjct: 159 -----LDMGFSDAIDEVIRF-APATRQTLLFSATWPEAIAAIS----GRVQQQPIRIEID 208

Query: 467 RID---------------EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            +D               E I  L+ +LS+ + A  +   +    + + ++V +  N++ 
Sbjct: 209 TVDALPAIEQQFFETSAHEKISLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALNAVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 Q---SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELVVNYELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFC 345


>gi|18400210|ref|NP_566469.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|1170503|sp|P41376|IF4A1_ARATH RecName: Full=Eukaryotic initiation factor 4A-1; Short=eIF-4A-1;
           AltName: Full=ATP-dependent RNA helicase eIF4A-1;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 4
 gi|16554|emb|CAA46188.1| eukaryotic translation initiation factor 4A-1 [Arabidopsis
           thaliana]
 gi|11994363|dbj|BAB02322.1| eukaryotic translation initiation factor; RNA helicase [Arabidopsis
           thaliana]
 gi|14594805|emb|CAC43288.1| translation initiation factor eIF-4A1 [Arabidopsis thaliana]
 gi|15293047|gb|AAK93634.1| putative Eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|15450486|gb|AAK96536.1| AT3g13920/MDC16_4 [Arabidopsis thaliana]
 gi|20259055|gb|AAM14243.1| putative eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|20466101|gb|AAM19972.1| AT3g13920/MDC16_4 [Arabidopsis thaliana]
 gi|22655066|gb|AAM98124.1| unknown protein [Arabidopsis thaliana]
 gi|23397033|gb|AAN31802.1| putative eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|332641917|gb|AEE75438.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 412

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 125/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 80  IQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 139

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 140 ACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMF--VLDEADEM 193

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++    +   P   V + +AT  P  L +T        K   KP        V
Sbjct: 194 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMSKP--------V 238

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 239 RILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 298

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 299 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQ 358

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 359 PENYLHRI-GRSGR 371


>gi|82705769|ref|XP_727104.1| eukaryotic initiation factor 4a-3 [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23482794|gb|EAA18669.1| eukaryotic initiation factor 4a-3 [Plasmodium yoelii yoelii]
          Length = 390

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 139/335 (41%), Gaps = 47/335 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+  IK IL      N    ILQ   G+GKT V  +     V    +  Q +I++P
Sbjct: 40  PSAIQQRGIKPIL------NGRDVILQSQSGTGKTCVFAVGALNCVNRNISETQVIILSP 93

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA----- 384
              LA+Q  +          + V    G    +   KAL    +   HII GT       
Sbjct: 94  TRELAEQTQKVCLALADYIHVTVYCCIGGKKMSEDIKAL----NNGVHIISGTPGRIYHM 149

Query: 385 --LFQDSIQYYK-LILVIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPRTLVLTSL 440
             L     +Y K L++   DE    G ++++    +  +P+  +++++  +P        
Sbjct: 150 LNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIVLSSATLPH------- 202

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
              ++ +IT K     P+K   I + R +  +E +K      +K  W    + +  ES  
Sbjct: 203 ---EVLEITNKFM-HNPVK---ILVKRDELTLEGIKQFFVSIEKEQWKYETLADLYESLT 255

Query: 499 --------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   N +  V+      +    ++  +H  MS  +++ +M  F+    ++LI+T +
Sbjct: 256 ITQAVVFCNTKLKVDWLAKKMQESNFTVCKMHAGMSQSERDDIMLKFRQCKYRVLISTDI 315

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              G+DV + S+++  +  +   + +H++ GR GR
Sbjct: 316 WGRGLDVHEVSLVVNYDLPNSRESYIHRI-GRSGR 349


>gi|294141707|ref|YP_003557685.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293328176|dbj|BAJ02907.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 352

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 143/359 (39%), Gaps = 61/359 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL-------IAMAAAVEAGGQA 324
           +PT+ Q+ AI      +S K+ M        GSGKTL  L       I+  A  +   + 
Sbjct: 23  TPTEIQQQAIP---VGLSGKDLMA---SSKTGSGKTLAFLLPAMQRIISTRALSKKDPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q Y  ++    NTQ     I G      + K L R      H ++ T  
Sbjct: 77  LILLPTRELANQVYGQLRLLVANTQYKAMKILGGENFNDQAKLLAR----DPHFVVATPG 132

Query: 385 LFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLTQKATAPH----VLLMTAT--- 429
              D +  + L L     +I+DE  R    G  ++LK   KA A H     L+ +AT   
Sbjct: 133 RLADHLAQHHLHLNGLELLILDEADRMLDLGFAEQLKAINKA-ADHKRRQTLMFSATLDH 191

Query: 430 ----PIPRTL------VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
                I   L      V    G+I+   IT++          I   + +D     L+ +L
Sbjct: 192 GQINDIAAELLKSPEHVDVGAGNIENLDITQR----------IYLADHLDHKEALLESIL 241

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +       I       +E   R   +   S H+  T+S++   G +    +  +MD F  
Sbjct: 242 NNETHKQIII--FTATREDTDRLATKLAASGHK--TASLS---GNLKQSARNQIMDQFSR 294

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G  K+L+ T +   G+D+++ S++I  +   F    +H++ GR GR       I L  P
Sbjct: 295 GLQKILVTTDIASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDAISLVGP 352


>gi|296813451|ref|XP_002847063.1| ATP-dependent RNA helicase DBP2 [Arthroderma otae CBS 113480]
 gi|238842319|gb|EEQ31981.1| ATP-dependent RNA helicase DBP2 [Arthroderma otae CBS 113480]
          Length = 417

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 72/347 (20%), Positives = 145/347 (41%), Gaps = 51/347 (14%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +     + A        G   +++AP   LA Q    I K+ ++++I 
Sbjct: 33  AETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIR 92

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR- 405
              + G +P+  + + L R       + I T     D ++       ++  +++DE  R 
Sbjct: 93  NTCVYGGVPRGPQIRDLTR----GVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRM 148

Query: 406 ----FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KI 448
               F  Q R  + Q           AT P  +   A    +  +   +G  D+S   +I
Sbjct: 149 LDMGFEPQIRKIIGQIRPDRQTCMWSATWPKDVRQLANDFLQDYIQVYIGSQDLSANHRI 208

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           T+       I  V+    + D +I+ L+ ++ + K    I    +   +      + RF 
Sbjct: 209 TQ-------IVEVVSEFEKRDRMIKHLERIMEDKKSKVLIFTGTKRVADD-----ITRF- 255

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L +    +++I HG     +++ V++ FK+G   +++AT V   GIDV D + ++  + 
Sbjct: 256 -LRQDGWPALSI-HGDKQQSERDWVLNEFKSGKSPIMVATDVASRGIDVRDITHVLNHDY 313

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
            +     +H++ GR GR     + I ++    +K +   + +L  ++
Sbjct: 314 PNNSEDYVHRI-GRTGRAGANGTAITMFTTENAKQARDLVKILTESK 359


>gi|242022035|ref|XP_002431447.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212516735|gb|EEB18709.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 636

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 160/385 (41%), Gaps = 74/385 (19%)

Query: 256 NVEGKIAQKILR---NIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           ++EGK+ +  L+   ++ F+  T+ Q  +I  +L+      R L +     GSGKTL  L
Sbjct: 145 SLEGKVCENTLKAIVDMGFTTMTEIQAKSIPPLLE-----GRDL-VGSAKTGSGKTLAFL 198

Query: 312 IAMAAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           I +   +         G  A+I++P   L+ Q +  +K+  +       ++ G    A+R
Sbjct: 199 IPVVELIYKLKFLPRNGVGAIIISPTRELSMQTFGVLKELMKYHYHTYGLVIGG---ANR 255

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHRF---GVQQRLK-- 413
           +   E+++ G  +I++ T     D +Q      +  L  +++DE  R    G ++ LK  
Sbjct: 256 KAEAEKLSKG-INILVATPGRLLDHLQNTPGFLFKNLQCLVIDEADRILDIGFEEELKQI 314

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           +         +L +AT   +T  LT L              ++P+         ID+  E
Sbjct: 315 INLLPKRRQTMLFSATTTAKTENLTKLA-----------LKKEPVYV------GIDDRKE 357

Query: 474 RLKVVLSEG-KKAYWICPQIEEKK---------ESNFRSVVERFNSL------HE---HF 514
           +  V   EG ++ Y +CP   EK+         ++  + V+  F+S       HE   + 
Sbjct: 358 KATV---EGLEQGYVVCPS--EKRFLLLFTFLKKNKKKKVMVFFSSCLSVKFHHELLNYI 412

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +  IHG+     + +V   F N    +L+ T V   G+D+     I+  +       
Sbjct: 413 DLPVMCIHGKQKQAKRTTVFFQFCNAESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKE 472

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP 599
            +H++ GR  RGE  S   LL   P
Sbjct: 473 YIHRV-GRTARGEGSSGHALLILRP 496


>gi|169351091|ref|ZP_02868029.1| hypothetical protein CLOSPI_01870 [Clostridium spiroforme DSM 1552]
 gi|169292153|gb|EDS74286.1| hypothetical protein CLOSPI_01870 [Clostridium spiroforme DSM 1552]
          Length = 456

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 158/373 (42%), Gaps = 59/373 (15%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           K   + +  + FS PT  QE  I  + ++    N ++ I Q   G+GKT   L+ +   +
Sbjct: 11  KFCYQTINELGFSKPTSIQEKVIPLVYKN----NDIIGISQ--TGTGKTHAFLLPVMDQI 64

Query: 319 EAGG---QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHG 374
           +      QAVI AP   LA Q Y   K + + N +I V ++ G    + R+K++ ++   
Sbjct: 65  DTNQDCVQAVITAPTRELATQIYNNAKLFVKYNEKIRVSLLIGG---SDRQKSVNKLT-V 120

Query: 375 QAHIIIGTH------ALFQDSIQYYKLILVIVDEQH---RFG-----------VQQRLKL 414
           Q HI+IGT       AL + +++       I+DE      FG           +++ LK+
Sbjct: 121 QPHIVIGTPGRIKDLALDEQALKITTASTFIIDEADMTLEFGYLEDIDAVAGKMKEDLKM 180

Query: 415 TQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID--EV 471
               AT P +L        +T V+    +ID  K+T        ++ V+I     D  +V
Sbjct: 181 MVFSATIPQMLRPFLKKYMQTPVIV---EIDDDKVTTDN-----VEHVLIATKHQDRYDV 232

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
           ++++  ++       +IC        +N R  V +           +  +HG +   +++
Sbjct: 233 LKKIMNIIDP-----YICIIF-----ANKRDEVAKITKQLREDGFKVGEVHGNLEPRERK 282

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEIS 590
            +M    N   + ++AT +   GID+   S +I  N E    +  +  R GR GRG+   
Sbjct: 283 QMMRRIHNNEYQYIVATDIAARGIDIDGVSHVI--NLEFPKESDFYIHRSGRSGRGKYTG 340

Query: 591 SCILLYHPPLSKN 603
            C  +Y      N
Sbjct: 341 VCYSMYDTSDEAN 353


>gi|154298956|ref|XP_001549899.1| p68 RNA helicase [Botryotinia fuckeliana B05.10]
 gi|150857630|gb|EDN32822.1| p68 RNA helicase [Botryotinia fuckeliana B05.10]
          Length = 473

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 145/343 (42%), Gaps = 51/343 (14%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +     + A        G   +++AP   LA Q  + I K+ ++++I 
Sbjct: 105 AETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIR 164

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G +P+  +   +  +A G   + I T     D I+  K  L     +++DE  R 
Sbjct: 165 NTCVYGGVPKGGQ---IRDLAKG-VEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRM 220

Query: 406 ----FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KI 448
               F  Q R  L Q           AT P  +   A+      +  ++G +++S   +I
Sbjct: 221 LDMGFEPQIRKILGQIRPDRQTCMWSATWPKEVRALASDYLNEFIQVNIGSLELSANHRI 280

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           T+       I  V+    + D++ + L+ ++ +      I    +   +      + RF 
Sbjct: 281 TQ-------IVEVVSEFEKRDKMTKHLEKIMEDKDNKILIFTGTKRVADD-----ITRF- 327

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L +    +++I HG     +++ V++ FK G   +++AT V   GIDV + + +   + 
Sbjct: 328 -LRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDY 385

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            +     +H++ GR GR  +  + I L+     K +   ++VL
Sbjct: 386 PNNSEDYIHRI-GRTGRAGQKGTAITLFTTDNQKQARDLVNVL 427


>gi|145345534|ref|XP_001417262.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577489|gb|ABO95555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 654

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 67/330 (20%), Positives = 124/330 (37%), Gaps = 48/330 (14%)

Query: 302 VGSGKTL------VALIAMAAAVEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQN 347
            G GKTL      V  +A  + + A G+         V++AP   LA+Q +        +
Sbjct: 129 TGCGKTLAFVLPIVEEMAKISPMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNS 188

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399
                  + G  P   +   L     G   ++IGT    +D ++   L        +L  
Sbjct: 189 FGFKSVCVYGGTPYREQEMGL----RGGCDVVIGTPGRMKDHLERKTLMMDKLKFRVLDE 244

Query: 400 VDEQHRFGVQQRLKLTQKATAP-HVLLMTAT------PIPRTLVLTSLGDID-ISKITEK 451
            DE    G    ++L  K++     LL +AT       I +  +      +D +    +K
Sbjct: 245 ADEMLNMGFVDDVELILKSSGDVQTLLFSATLPPWVKDIAKRFLKPDYATVDLVGDQKQK 304

Query: 452 PAGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            +G   ++ +++P    +R+D V + ++     G +    C           R   E  +
Sbjct: 305 ASG--AVQHMLLPCQWSDRVDLVCDVIRSKAPGGGRVIVFC--------DTKRDCGELCD 354

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +L +        +HG +S   +E V+  F+    ++L+AT V   G+D+    ++I    
Sbjct: 355 NLQKEIPKGAKALHGDVSQGQREVVLAGFREDKFQVLVATDVAARGLDITGVELVIQCEP 414

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                  +H+  GR GR       + L  P
Sbjct: 415 PKDAETYIHR-SGRTGRAGATGISVTLCTP 443


>gi|116629645|ref|YP_814817.1| superfamily II DNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238854270|ref|ZP_04644614.1| ATP-dependent DNA helicase RecQ [Lactobacillus gasseri 202-4]
 gi|282851150|ref|ZP_06260517.1| ATP-dependent DNA helicase RecQ [Lactobacillus gasseri 224-1]
 gi|311110712|ref|ZP_07712109.1| ATP-dependent DNA helicase RecQ [Lactobacillus gasseri MV-22]
 gi|116095227|gb|ABJ60379.1| ATP-dependent DNA helicase, RecQ-like protein [Lactobacillus
           gasseri ATCC 33323]
 gi|238833081|gb|EEQ25374.1| ATP-dependent DNA helicase RecQ [Lactobacillus gasseri 202-4]
 gi|282557682|gb|EFB63277.1| ATP-dependent DNA helicase RecQ [Lactobacillus gasseri 224-1]
 gi|311065866|gb|EFQ46206.1| ATP-dependent DNA helicase RecQ [Lactobacillus gasseri MV-22]
          Length = 597

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 126/318 (39%), Gaps = 43/318 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK+L   I    A+   G  ++++P+  L +   + +K+      I    +    PQ
Sbjct: 39  TGAGKSLCYQIP---ALINPGLTLVVSPLISLMKDQIDSLKQ----NGINAAALNSATPQ 91

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQRLK 413
                 L +   G+  ++  T        F+  + +  + LV VDE H   ++G   R  
Sbjct: 92  EEVNPILRQAYEGKIKLLYVTPERLAMNYFRYQLNFLNVSLVAVDEAHCISQWGHDFRPA 151

Query: 414 LTQK-------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
             Q         + P++L +TAT  P           DI+   + P+    I +   P  
Sbjct: 152 YRQIMDGVKSIKSNPNILALTATATPSV-------QKDIADQLQIPSANYVITSFARPN- 203

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAI 520
                    KVV +      ++   I++    +   + S  +    L ++   +    A 
Sbjct: 204 ------LSFKVVDNPKNTNLYLLDYIKQHPHESGIIYASTRKHVEELTDYLAQNGILTAS 257

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            H  +S+ ++  V D+F+    ++++AT    +GID  +   +I  N+    L   +Q  
Sbjct: 258 YHAGLSNKERADVQDAFQFDKVQVIVATNAFGMGIDKRNVRFVIHANSTP-NLESYYQEA 316

Query: 581 GRVGRGEEISSCILLYHP 598
           GR GR  E    IL+YHP
Sbjct: 317 GRAGRDGEACEGILIYHP 334


>gi|329926640|ref|ZP_08281053.1| primosomal protein N' [Paenibacillus sp. HGF5]
 gi|328939181|gb|EGG35544.1| primosomal protein N' [Paenibacillus sp. HGF5]
          Length = 842

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 27/179 (15%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + P + T  Q++  + I++ + ++     +L G  GSGKT + L  +   ++   QA+++
Sbjct: 282 SAPLALTPEQQAVYRSIVRKLDERKHGAFLLHGVTGSGKTEIYLQTIQRCMDQERQAIVL 341

Query: 328 AP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-AL 385
            P I +  Q    F  ++       V ++   +    R     +I  G+A +++G   A+
Sbjct: 342 VPEISLTPQMVERFKARFGDR----VAVMHSRLSDGERYDEWRKIREGRASVVVGARSAV 397

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQ--------------RLKLTQKATAPHVLLMTATP 430
           F     + +L L+I+DE+H    +Q              R  LT  A    V+L +ATP
Sbjct: 398 F---APFDRLGLIIMDEEHESSYKQEETPKYHARDVAIHRASLTGAA----VILGSATP 449


>gi|303257750|ref|ZP_07343762.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium
           1_1_47]
 gi|331001188|ref|ZP_08324815.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
 gi|302859720|gb|EFL82799.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium
           1_1_47]
 gi|329569120|gb|EGG50912.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
          Length = 458

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 37/294 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHI 378
           + +I++P   LA Q  E +  Y  +T I + ++ G +   PQA   RK +E        I
Sbjct: 83  RVLILSPTRELADQTAEALSNYAADTPIRIGVVYGGVDIKPQAEALRKGVE--------I 134

Query: 379 IIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLM 426
           +I T     D ++     L     VI+DE  R         + + L    K     +   
Sbjct: 135 LIATPGRLLDHLEQRNTNLNQSGIVILDEADRMLDMGFLPDISRILNALPKKRQNLMFSA 194

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSE-- 481
           T +P  + L    L D  + ++  + A    IK  +  +N   + D ++E LK    +  
Sbjct: 195 TFSPEIKKLAGNFLTDPVVIEVARQNATAATIKQEVFSVNELQKTDALVELLKTRGEDPD 254

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           GK    I          N +    R     E    +   IHG  +  ++  ++  FK+GT
Sbjct: 255 GKPLQTIV-------FVNAKLTARRLARELEKCGFNADAIHGDKTQEERLKLLKDFKDGT 307

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             +++AT V   G+D+ +  ++I  +        +H++ GR GR       ++L
Sbjct: 308 LNIMVATDVAARGLDIAELPLVINYDVPFVPEDYVHRI-GRTGRAGSSGLALML 360


>gi|261819539|ref|YP_003257645.1| primosome assembly protein PriA [Pectobacterium wasabiae WPP163]
 gi|261603552|gb|ACX86038.1| primosomal protein N' [Pectobacterium wasabiae WPP163]
          Length = 732

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ +     V+++
Sbjct: 221 LLAGITGSGKTEVYLSVLENVLAQGKQALVLVPEIGLTPQT----IARFRERFNAPVDVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   G+A I+IGT  ALF     + +L L+++DE+H    +Q+
Sbjct: 277 HSALNDSERLAVWLRARSGEAAIVIGTRSALF---TPFARLGLIVIDEEHDSSYKQQ 330


>gi|253686576|ref|YP_003015766.1| primosomal protein N' [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753154|gb|ACT11230.1| primosomal protein N' [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 732

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ +     V+++
Sbjct: 221 LLAGITGSGKTEVYLSVLENVLAQGKQALVLVPEIGLTPQT----IARFRERFNAPVDVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   G+A I+IGT  ALF     + +L L+++DE+H    +Q+
Sbjct: 277 HSALNDSERLAVWLRARSGEAAIVIGTRSALF---TPFARLGLIVIDEEHDSSYKQQ 330


>gi|190150443|ref|YP_001968968.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263787|ref|ZP_07545393.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915574|gb|ACE61826.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306870908|gb|EFN02646.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 602

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 114/281 (40%), Gaps = 55/281 (19%)

Query: 390 IQYYKLILVIVDEQH---RFGVQQRLKLTQ----KATAPHVLLM----TATPIPRTLVL- 437
           I   K+ L+ VDE H   ++G   R + T     + T P+V LM    TA P  R  +L 
Sbjct: 130 ISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFPNVPLMALTATADPTTRHDILQ 189

Query: 438 --------TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                   T LG  D      +P  R  ++    P+ ++ + I +      +GK     C
Sbjct: 190 HLRLTDPHTYLGSFD------RPNIRYTVQEKFKPVEQLAKFISK-----QQGKSGIVYC 238

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N R  VE           S+   H  MS   +E+V ++F+    ++++AT 
Sbjct: 239 ---------NSRKKVEEITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATI 289

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
              +GI+  +   ++     HF L +     +Q  GR GR +  S  +L Y P  +  ++
Sbjct: 290 AFGMGINKSNVRFVV-----HFDLPRSIESYYQETGRAGRDDLPSEAVLFYDP--ADYAW 342

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            +  +L+  E      + D+KQ K   I    +S   + L+
Sbjct: 343 LQKVLLEEPES----EQRDIKQHKLQAIGAFAESQTCRRLV 379


>gi|164655646|ref|XP_001728952.1| hypothetical protein MGL_3946 [Malassezia globosa CBS 7966]
 gi|159102840|gb|EDP41738.1| hypothetical protein MGL_3946 [Malassezia globosa CBS 7966]
          Length = 396

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 138/340 (40%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AI  IL     + R + I Q   G+GKT    IAM   ++      QA++++P
Sbjct: 46  PSAIQQRAILPIL-----RGRDV-IAQAQSGTGKTATFSIAMLQTIDISLRETQALVLSP 99

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q    +        +      G        + LE   +GQ HI+ GT     D 
Sbjct: 100 TRELATQIQSVVLALGDYMNVQCHACIGGTSVGEDIRKLE---YGQ-HIVSGTPGRVFDM 155

Query: 390 IQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L      ++I+DE       G + ++    +   P   V+L++AT     L +TS
Sbjct: 156 IRRRHLRTKNIKMLIMDESDELLNMGFKDQIYDIYRYLPPATQVVLVSATLPHDVLEMTS 215

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                  K    P        V I + R +  +E +K      +K  W    + +  ++ 
Sbjct: 216 -------KFMTDP--------VRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTL 260

Query: 499 ---------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N R  V+            ++ +HG M   +++++M  F+ G  ++LI T 
Sbjct: 261 TITQAVIFCNTRRKVDWLTDRMRENNFQVSSMHGEMQQKERDAIMGEFRQGGSRVLITTD 320

Query: 550 VIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
           V   GIDV + S++I      N E++    +H++ GR GR
Sbjct: 321 VWARGIDVQNVSLVINYDLPTNRENY----IHRI-GRSGR 355


>gi|109089499|ref|XP_001110939.1| PREDICTED: nucleolar RNA helicase 2-like isoform 3 [Macaca mulatta]
          Length = 783

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 133/340 (39%), Gaps = 63/340 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---------GQAVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   +             Q +++AP   LA Q  +     T+ 
Sbjct: 227 IAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITK- 285

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +    ER+ +G   I++GT    +D IQ  KL L     V++DE
Sbjct: 286 -KLSVACFYGGTPYGGQ---FERMRNG-IDILVGTPGRIKDHIQSGKLDLTKLKHVVLDE 340

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTAT------PIPRTLVLTSLGDIDIS 446
             +         V++ L +  K  +   P  LL +AT       + +  + ++   +D+ 
Sbjct: 341 VDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDL- 399

Query: 447 KITEKPAGRKPIKTVIIP---------INRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                  G+K  KT I             R   + + ++V      +    C   +E +E
Sbjct: 400 ------IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQE 453

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +  S +++              +HG +    +E  +  F+NG+  +L+AT V   G+D+
Sbjct: 454 LSQNSAIKQ----------DAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDI 503

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +  ++I  +      + +H+  GR GR      CI  Y 
Sbjct: 504 PEVDLVIQSSPPKDVESYIHR-SGRTGRAGRTGVCICFYQ 542


>gi|37519594|ref|NP_922971.1| primosome assembly protein PriA [Gloeobacter violaceus PCC 7421]
 gi|35210585|dbj|BAC87966.1| primosomal protein N' [Gloeobacter violaceus PCC 7421]
          Length = 809

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 27/209 (12%)

Query: 272 SPTKSQES------AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           +PT S ++      A K +L  +        +L+G  GSGKT V L A+A  ++ G  A+
Sbjct: 265 APTASADAPKLLTDAQKQVLDRLQGATPGPVLLEGVTGSGKTEVYLQAIAPVLDRGESAL 324

Query: 326 IMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P IG+  Q    F  ++       V +    + +  R     ++  G+A +++GT +
Sbjct: 325 VLVPEIGLTPQLTDRFAARFGAR----VRVYHSALSEGERFDCWRQMLTGEAQVVVGTRS 380

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQ------------RLKLTQKATAPHVLLMTATPIP 432
                +   KL L+++DE+H    +Q             L   + A  P VLL +ATP  
Sbjct: 381 AVFAPLP--KLGLIVLDEEHDGSYKQDRPAPCYHARTVALWRGELAGCP-VLLGSATPDL 437

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            +    + G     ++ E+ AGR P+  V
Sbjct: 438 ESFDRATAGRYLHLEMPERVAGR-PLPAV 465


>gi|317012840|gb|ADU83448.1| primosome assembly protein PriA [Helicobacter pylori Lithuania75]
          Length = 619

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 73/136 (53%), Gaps = 15/136 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +++Q +A+K++     QK+    +L GD GSGKT + + ++A  +E    A+++ P I +
Sbjct: 112 SQTQTNALKEL-----QKHSA-SLLFGDTGSGKTEIYMHSIAQTLEQKKSALLLVPEIAL 165

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q      + + +N    + +    + Q  +++ LE++   +  +++GT  ALF   + 
Sbjct: 166 TPQMQQRLKRVFKEN----LGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRSALF---LP 218

Query: 392 YYKLILVIVDEQHRFG 407
             +L L+IVDE+H F 
Sbjct: 219 LKELGLIIVDEEHDFS 234


>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
           stomatis DSM 17678]
          Length = 538

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 125/308 (40%), Gaps = 33/308 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I +   ++      QA+++ P   LA Q  E ++K  +  Q I  
Sbjct: 45  IGQAQTGTGKTASFSIPILENIDRDNRKLQAIVLCPTRELAIQVSEEVRKLAKYMQGIRT 104

Query: 354 I-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQH 404
           + I G  P   + KAL+    G   + IGT     D I        Q   ++L   DE  
Sbjct: 105 LPIYGGQPIDRQIKALK----GGVQVAIGTPGRVIDHINRKTLKLDQVKMVVLDEADEML 160

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS--KITEKPAGRKPIKT 460
             G ++ ++  L+         L +AT     L LT     D    K+  K      IK 
Sbjct: 161 DMGFREDIETILSNVPEERQTALFSATMPKAILELTKKYQKDPVHIKVVRKTLTVSNIKQ 220

Query: 461 VIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             I   + +  EV+ RL  V +         P++     +  +   E  +SL      + 
Sbjct: 221 YYIETRKSNKLEVLTRLLDVYN---------PKLTVVFTNTKKGADELVSSLQARGYGAD 271

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           ++ HG +  + ++ VMD F+ GT  +L+AT V   GID+ D   +I           +H+
Sbjct: 272 SL-HGDLKQVQRDIVMDKFRAGTIDILVATDVAARGIDIDDVECVINYELPQDDEYYVHR 330

Query: 579 LRGRVGRG 586
           + GR GR 
Sbjct: 331 I-GRTGRA 337


>gi|292486623|ref|YP_003529493.1| primosomal protein N' [Erwinia amylovora CFBP1430]
 gi|291552040|emb|CBA19077.1| Primosomal protein N' [Erwinia amylovora CFBP1430]
 gi|312170686|emb|CBX78949.1| Primosomal protein N' [Erwinia amylovora ATCC BAA-2158]
          Length = 771

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I +++Q     V+++
Sbjct: 260 LLAGITGSGKTEVYLSVLENILAGGKQALVLVPEIGLTPQT----IARFSQRFNAPVDVL 315

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   G+  I+IGT  ALF     + +L ++++DE+H    +Q+
Sbjct: 316 HSGLNDSERLAVWLRARSGETAIVIGTRSALF---TPFARLGVIVIDEEHDSSYKQQ 369


>gi|218281439|ref|ZP_03487888.1| hypothetical protein EUBIFOR_00453 [Eubacterium biforme DSM 3989]
 gi|218217417|gb|EEC90955.1| hypothetical protein EUBIFOR_00453 [Eubacterium biforme DSM 3989]
          Length = 475

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 141/339 (41%), Gaps = 52/339 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAP 329
           P   QE  I +IL   SQ +    I++   GSGKT    + +I      E   QA+++ P
Sbjct: 24  PLPVQEQVIPNIL---SQTDC---IVKSRTGSGKTASFAIPIIQNLEIDERSPQALVLTP 77

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-- 384
              LA   QQ ++ I  + +   I    I G  P   +++ L++    + H++IGT    
Sbjct: 78  TRELALQIQQDFDRIGTFKK---IKTLPIFGKQPFKFQKEDLKQ----RCHVVIGTPGRV 130

Query: 385 ---LFQDSIQYYKLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRT 434
              L Q ++   K+  V++DE            VQ  LK   K    HV  + +   P  
Sbjct: 131 LDHLQQQTLDPSKIKYVVLDEADEMLNMNFLDEVQAILKYMPKK---HVTCLFSATYPAV 187

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +   S           K    KP K  +   N+ + ++E    V  E K+ + +     +
Sbjct: 188 IQRMS-----------KKYLYKPAKVDLTSTNKPN-ILEEAYHVNEEHKELFLLHLLALK 235

Query: 495 KKESN--FRSVVERFNSLH---EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           K ES   F     R ++++   E    S+  IHG M   ++ S M  FK G  ++L+ T 
Sbjct: 236 KPESCMIFCKTQARVDAVYACLEKNQVSVDKIHGGMMQEERLSHMRRFKKGKVRILVCTD 295

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           V   GIDV    +II  +         H++ GR GR +E
Sbjct: 296 VASRGIDVFKVEMIINYDMPSPVETYTHRI-GRSGRVDE 333


>gi|195344854|ref|XP_002038991.1| GM17282 [Drosophila sechellia]
 gi|194134121|gb|EDW55637.1| GM17282 [Drosophila sechellia]
          Length = 822

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 146/369 (39%), Gaps = 64/369 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA------------AVE 319
            PT  Q  AI   LQ     NR + I   + GSGKTL  LI + +             V+
Sbjct: 416 EPTPIQRQAIPIGLQ-----NRDI-IGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVD 469

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G  A+IMAP   LAQQ  E   K+ Q   I   ++ G +    R +   R+  G   I+
Sbjct: 470 QGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGL---SREEQGFRLRLG-CEIV 525

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQ--------RLKLTQKAT 419
           I T     D ++   L+L     +++DE  R         VQ+         LK   +  
Sbjct: 526 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEA 585

Query: 420 APHVLLM----TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                LM    +     +T++ T+     + ++  +   R+P    I  + +  E  E++
Sbjct: 586 EDETKLMENFYSKKKYRQTVMFTATMPPAVERLA-RTYLRRPATVYIGSVGKPTERTEQI 644

Query: 476 KVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             ++ E  K   +   +  K +       N +   +      E    +   +HG      
Sbjct: 645 VYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQ 704

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVG 584
           +E  + + K+G   +L+AT V   GID+ D S++I     ++ +A+      H++ GR G
Sbjct: 705 REYALAALKSGAKDILVATDVAGRGIDIKDVSLVI-----NYDMAKTIEDYTHRI-GRTG 758

Query: 585 RGEEISSCI 593
           R  +    I
Sbjct: 759 RAGKTGCAI 767


>gi|170030308|ref|XP_001843031.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167866923|gb|EDS30306.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 404

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 123/288 (42%), Gaps = 36/288 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    IA+   ++      QA+I+AP   LA Q  + +       Q    
Sbjct: 72  IAQAQSGTGKTATFSIAILQQIDTNIPECQALILAPTRELATQIQKVVIALGDYLQAQCH 131

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-------QYYKL-ILVIVDEQHR 405
              G     + R  + ++  G  HI++GT     D I        + KL +L   DE   
Sbjct: 132 ACIGG---TNVRDDMRKLEMG-CHIVVGTPGRVHDMISRNFLRTNHIKLFVLDEADEMLS 187

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + +++           V+L++AT +P  ++  S   +           R+P+K ++ 
Sbjct: 188 RGFKDQIQDVFRMLPNDVQVILLSAT-MPSEVLEVSTHFM-----------REPVKILVK 235

Query: 464 PINRIDEVIERLKV-VLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTS 516
                 E I++  + V  EG K   +C   +    +      N R  V++  +     + 
Sbjct: 236 KEELTLEGIKQFYIDVKQEGWKLGTLCDLYDTLSITQAVIFCNTRRKVDQLTADMAAESF 295

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +++ +HG M   D++ +M  F+ G+ ++LI T ++  GIDV   S++I
Sbjct: 296 TVSSMHGDMDQRDRDLIMKQFRTGSSRVLITTDLLARGIDVQQVSLVI 343


>gi|138896709|ref|YP_001127162.1| ComF operon protein 1 [Geobacillus thermodenitrificans NG80-2]
 gi|134268222|gb|ABO68417.1| ComF operon protein 1 [Geobacillus thermodenitrificans NG80-2]
          Length = 458

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 138/333 (41%), Gaps = 53/333 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           + +QE A  ++ Q +  +  +L  +    G+GKT +   A+AAA+E G +  +  P I +
Sbjct: 116 SAAQEEAAMEVKQAVLNRRELL--VWAVCGAGKTEILFPAIAAALEEGWRVCLATPRIDV 173

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           + +    F + + +            +P A      E        ++  TH L +    Y
Sbjct: 174 VRELAPRFRQAFPR------------VPLAVWYGGSEERGQIAPLVLSTTHQLLR---AY 218

Query: 393 YKLILVIVDEQHRF--GVQQRLKLT---QKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
               ++I+DE   F   V+  L+      +     ++ +TATP     +    G    + 
Sbjct: 219 RVFDVMIIDEVDAFPYSVEPMLEYAVSQARKEQSSLIYLTATPSRAWQLDVQCGKRQAAV 278

Query: 448 ITEKPAG--------------RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           I  +  G              RK ++   +P N +  V+ RL+    + K+A+   P I+
Sbjct: 279 IPARYHGHPLPVPSFEWCGNWRKRLERGRLPENVLAWVLRRLE----QRKQAFLFVPHID 334

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           E         +E    L +   + I  +H       +   + +F++G+  LL+ TT++E 
Sbjct: 335 E---------LEAVTRLLQRVDARIVGVHAEAPA--RAEYVQAFRDGSVPLLVTTTILER 383

Query: 554 GIDVVDASIIIIENAEH-FGLAQLHQLRGRVGR 585
           G+ V +  + ++   +  F  + L Q+ GRVGR
Sbjct: 384 GVTVPNIDVAVLGAEDRIFTESALVQIAGRVGR 416


>gi|28899115|ref|NP_798720.1| putative ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308094400|ref|ZP_07662908.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus AN-5034]
 gi|28807339|dbj|BAC60604.1| putative ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308091423|gb|EFO41118.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus AN-5034]
          Length = 654

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 135/331 (40%), Gaps = 46/331 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            GSGK+L   +    A       ++++P+  L +    F+    Q+  I    I  +  +
Sbjct: 55  TGSGKSLCYQLP---ATMLPNLTLVISPLLALMKDQLSFL----QSKGIAAASIDSSQSR 107

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQR-- 411
              ++ +  + +G+  I++ +     +  F++ I+   + L++VDE H    +G   R  
Sbjct: 108 EEAQRVMVGVKNGEIKILMISVERLKNERFREFIRQVPISLMVVDEAHCISEWGHNFRPD 167

Query: 412 -LKLTQ---KATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
            LKL Q   +   P  LL+TAT  P  +  + +  DI    IT     R  +   +IP  
Sbjct: 168 YLKLPQYQRELNIPQTLLLTATATPAVIEDMKNKFDIASDHITVTGFYRSNLDISVIPCE 227

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
             ++  +   +V +  K    +    ++  E   +S++        H   +    H  M 
Sbjct: 228 ESEKQTQLNTIVAAAPKLPTIVYVTQQQTAEQVAKSLI--------HIGVNAHAYHAGMK 279

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGR 582
              +E +   F  G    ++AT    +G+D  D   +I     HF L +      Q  GR
Sbjct: 280 SEVREQIQQQFMAGQIDCIVATIAFGMGVDKSDIRRVI-----HFDLPKSIENYAQEIGR 334

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            GR  + S CILL        + + L+VL+N
Sbjct: 335 AGRDGQRSECILL-------GNTSGLTVLEN 358


>gi|15221761|ref|NP_175829.1| EIF4A-2; ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|1170505|sp|P41377|IF4A2_ARATH RecName: Full=Eukaryotic initiation factor 4A-2; Short=eIF-4A-2;
           AltName: Full=ATP-dependent RNA helicase eIF4A-2;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 19
 gi|4585969|gb|AAD25605.1|AC005287_7 Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|14423372|gb|AAK62368.1|AF386923_1 Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|16226681|gb|AAL16231.1|AF428462_1 At1g54270/F20D21_52 [Arabidopsis thaliana]
 gi|16556|emb|CAA46189.1| eukaryotic translation initiation factor 4A-2 [Arabidopsis
           thaliana]
 gi|21593545|gb|AAM65512.1| eukaryotic translation initiation factor 4A, putative [Arabidopsis
           thaliana]
 gi|30725682|gb|AAP37863.1| At1g54270 [Arabidopsis thaliana]
 gi|110740791|dbj|BAE98493.1| Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|332194952|gb|AEE33073.1| translation initiation factor 4A-2 [Arabidopsis thaliana]
          Length = 412

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 124/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 80  IQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVH 139

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D I+ +  +L   DE 
Sbjct: 140 ACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMF--VLDEADEM 193

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++    +   P   V + +AT  P  L +T        K   KP        V
Sbjct: 194 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMSKP--------V 238

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 239 RILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 298

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 299 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQ 358

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 359 PENYLHRI-GRSGR 371


>gi|86145756|ref|ZP_01064085.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
 gi|85836455|gb|EAQ54584.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
          Length = 665

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 118/295 (40%), Gaps = 44/295 (14%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+IMAP   LA Q    IK   ++ + + V  I G      + +AL R     AHI++G
Sbjct: 76  QAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRALSR----GAHIVVG 131

Query: 382 THALFQDSIQYYKLILVIVDEQHRF---GVQQRLK----------LTQKATAPHVLLMTA 428
           T    +D +   +L L   DE H F      + LK          L Q   +   +L +A
Sbjct: 132 TPGRVKDLLTRDRLHL---DEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSA 188

Query: 429 T--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLS-EGKK 484
           T  P+ +T+V   L              R P K  +   N  +D+V +   VV   E  +
Sbjct: 189 TMPPMVKTIVDRYL--------------RNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDE 234

Query: 485 AYWICPQIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           A     + EE   S      R   ER            A +HG +    +E  +D  K G
Sbjct: 235 AMSRLLETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQG 294

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
              +L+AT V+  G+DV   + +   +      + +H++ GR GR       ILL
Sbjct: 295 VIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILL 348


>gi|313157396|gb|EFR56819.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
          Length = 473

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 142/357 (39%), Gaps = 67/357 (18%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKT----LVALIAMAAAVEAGG--- 322
           +PT  QE AI   L+         R L G    G+GKT    L  L  ++A     G   
Sbjct: 23  TPTPIQEQAIPPALEG--------RDLMGCAQTGTGKTAAFTLPILQLLSARPRTKGRRP 74

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHGQ 375
            +A+++ P   LA Q  E  + Y + T +   +I G + Q  +  AL+R         G+
Sbjct: 75  IKALVLTPTRELAIQIDECCRDYARYTDLRHCVIFGGVNQRPQVDALQRGVDLLVATPGR 134

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTA 428
              +IG   +    I+++     ++DE  R         +++ L L  K      L  +A
Sbjct: 135 LLDLIGQGYVSLSDIRFF-----VLDEADRMLDMGFIHDIKRILPLLPKER--QTLFFSA 187

Query: 429 TPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           T +P    TL  + L D              P+   + P   + E I +  +   + +K 
Sbjct: 188 T-MPSDIVTLANSMLHD--------------PVHVTVTPPASVVETISQSVMFAEKAEKK 232

Query: 486 YWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +   + E+ E      S  +   +R   +          IHG  S   +E  M+ F+ 
Sbjct: 233 DLLISLLRERSEGSVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMNDFRA 292

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           G C++LIAT +   GID+ +  ++I  +        +H++ GR GR    G  I+ C
Sbjct: 293 GRCRVLIATDIAARGIDISELPLVINYDLPEVAETYVHRI-GRTGRAGHDGTAIAFC 348


>gi|159043882|ref|YP_001532676.1| DEAD/DEAH box helicase domain-containing protein [Dinoroseobacter
           shibae DFL 12]
 gi|157911642|gb|ABV93075.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL
           12]
          Length = 493

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 151/377 (40%), Gaps = 56/377 (14%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N++ K+ + I      +PT  Q  AI   L+       +L I Q   G+GKT    + M
Sbjct: 7   LNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRD----VLGIAQ--TGTGKTASFTLPM 60

Query: 315 AAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
              +  G       +++++AP   LA Q  E    Y ++T++   ++ G +      K  
Sbjct: 61  ITMLRKGRARARMPRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGV----SFKEQ 116

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
           + +      ++I T     D  +  KLIL     ++VDE  R      +   +K      
Sbjct: 117 DLLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEK------ 170

Query: 424 LLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            +   TP  R TL  ++    +I +IT       P +  +   +   E I +  V     
Sbjct: 171 -IFQLTPFTRQTLFFSATMAPEIERITNTFLS-NPARVEVARQSTTSETITQGLVQFKPS 228

Query: 483 KKAYWICPQIEEKKESNFRSVVER---------------------FNSLHEHFTSSIAII 521
           ++        +EK+E   R+++ER                       SL +H   + A I
Sbjct: 229 RRDRATA--FKEKREM-LRALIEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDA-API 284

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG +    +   +D F++GT K L+A+ V   G+D+ + S +   +        +H++ G
Sbjct: 285 HGDLEQSQRTKTLDQFRDGTLKFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRI-G 343

Query: 582 RVGRGEEISSCILLYHP 598
           R GR     + ++L  P
Sbjct: 344 RTGRAGRKGTTLMLAVP 360


>gi|187479233|ref|YP_787258.1| ATP-dependent RNA helicase [Bordetella avium 197N]
 gi|115423820|emb|CAJ50371.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
          Length = 477

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 58/291 (19%), Positives = 125/291 (42%), Gaps = 31/291 (10%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q YE +K+Y+ +T +   ++ G +    +++AL +       +++ T
Sbjct: 93  RALILTPTRELADQVYENVKRYSLHTPLRSAVVFGGVDIGPQKEALRQ----GCEVLVAT 148

Query: 383 HALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                    Q ++   ++ ++++DE  R      L   ++      ++    P  + L+ 
Sbjct: 149 PGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLER------IIRLLPPQRQGLLF 202

Query: 438 TSLGDIDISKITEKPAGR----KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           ++    +I K+     GR    +P++  +   N   + + ++   ++   K   +   ++
Sbjct: 203 SATFSNEIRKL-----GRSYLNQPVEIEVAARNATADTVTQIAYQMTGEAKRAAVVHLVK 257

Query: 494 EK--KE----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +  K+    SN +    R     E        IHG  S  D+   +++FK G  ++L+A
Sbjct: 258 SRGLKQVIVFSNTKIGTARLARQLELDGVKAESIHGDKSQADRMKALEAFKAGELEVLVA 317

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           T V   G+DV     +I  +  +     +H++ GR GR       I L+ P
Sbjct: 318 TDVAARGLDVAGVPCVINYDLPYNAEDYVHRI-GRTGRAGASGEAIALFTP 367


>gi|297834230|ref|XP_002884997.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330837|gb|EFH61256.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 412

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 125/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 80  IQQAQSGTGKTATFCSGVLQQLDFSLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 139

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 140 ACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMF--VLDEADEM 193

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++    +   P   V + +AT  P  L +T        K   KP        V
Sbjct: 194 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMSKP--------V 238

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 239 RILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 298

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 299 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQ 358

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 359 PENYLHRI-GRSGR 371


>gi|194745414|ref|XP_001955183.1| GF18634 [Drosophila ananassae]
 gi|190628220|gb|EDV43744.1| GF18634 [Drosophila ananassae]
          Length = 704

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 145/354 (40%), Gaps = 47/354 (13%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  ++ +   
Sbjct: 312 TGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNT 371

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G  P+  + + L+R       I+I T     D     S    +   +++DE  R   
Sbjct: 372 CVFGGAPKGSQMRDLQR----GCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLD 427

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGD-IDISKITEKPAGRKPIK 459
             F  Q R  ++Q       L+ +AT  P+    L    LG+ I I+  + + +    I+
Sbjct: 428 MGFEPQIRKIVSQIRPDRQTLMWSAT-WPKEVKQLAEDFLGNYIQINIGSLELSANHNIR 486

Query: 460 TVIIPINRIDEVIERLKVVLSE----GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            V+   +   +  E+LK +LS+     +    I   +E K+       V+        F 
Sbjct: 487 QVVEVCDEFSKE-EKLKSLLSDIYDTSENPGKIIIFVETKRR------VDNLVRFIRSFG 539

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHF 571
                IHG  S  +++ V+  F++G   +L+AT V   G+DV     +I     +N+E +
Sbjct: 540 VRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDY 599

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
               +H++ GR GR     +    +    +K +   + VL+        A E+L
Sbjct: 600 ----IHRI-GRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENL 648


>gi|239828350|ref|YP_002950974.1| helicase [Geobacillus sp. WCH70]
 gi|239808643|gb|ACS25708.1| helicase domain protein [Geobacillus sp. WCH70]
          Length = 499

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 145/350 (41%), Gaps = 62/350 (17%)

Query: 271 FSP-------TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           FSP       ++ Q+ A  D ++D   +N  L ++    G+GKT V    +A A+E G +
Sbjct: 146 FSPLSWNGILSQGQQRA-ADAVEDAIVRNDEL-LVWAVCGAGKTEVLFPGIARALEMGKR 203

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             I  P   + ++    +K+   +  +I  +  G+          +        +I  TH
Sbjct: 204 VCIATPRTDVVRELAPRLKQAFPSVPLIA-LYGGS----------DDRGKFAPFVISTTH 252

Query: 384 ALFQDSIQYYKLI-LVIVDEQHRFGVQQRLKL------TQKATAPHVLLMTATPIPRTLV 436
            L    +++Y+   ++++DE   F       L       +K T+  ++ +TATP P    
Sbjct: 253 QL----LRFYRAFDVMVIDEVDAFPYSMEPMLEYAVAKARKETS-SLIYLTATPHPAWQK 307

Query: 437 LTSLGDIDISKITEKPAG--------------RKPIKTVIIPINRIDEVIERLKVVLSEG 482
               G      I  +  G              RK +K   +P N    VI  +K+ +   
Sbjct: 308 EIKRGKRKAVTIPARYHGFPLPVPSFEWCGNWRKQLKRSRLPRN----VITWVKLRIETA 363

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           K+A+   P I+E ++     VV     L E     I  +H    D  +   + +F++G  
Sbjct: 364 KQAFLFVPHIDELEQ-----VVRILKQLDER----IEGVHA--EDPKRAEKVQAFRDGRI 412

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEH-FGLAQLHQLRGRVGRGEEISS 591
            LL+ TT++E G+ V +  + ++   +  F  + L Q+ GRVGR  +  S
Sbjct: 413 PLLVTTTILERGVTVPNIDVAVLGAEDRIFTESALVQIAGRVGRSAQFPS 462


>gi|322696830|gb|EFY88617.1| ATP-dependent RNA helicase dbp3 [Metarhizium acridum CQMa 102]
          Length = 591

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 142/347 (40%), Gaps = 46/347 (13%)

Query: 300 GDVGSGKTLVALIAMAAAVEA----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            + GSGKT+   +    +V A    G +AV+++P   LA Q +  +       ++    +
Sbjct: 215 AETGSGKTMAFALPCVESVSAIGKKGTKAVVISPTRELAMQTHTQLASLAALAKLKCVCL 274

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---- 406
            G   +  +R  + R     A II+ T    +D     ++        ++DE  R     
Sbjct: 275 YGGSSKDEQRAMVNR----GADIIVATPGRLKDFMSDGTVDLSDCQFAVLDEADRMLDKG 330

Query: 407 ---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
               ++Q L           L+ TAT       L S   +D  KIT    G K  +   +
Sbjct: 331 FEDDIKQILGACLARERRQTLMFTATWPQSVQALASTFMVDPVKITIGSGG-KETENGSV 389

Query: 464 PINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVV----ERFNSLHEHFTSS 517
            +     + ++++VV  + K  +   I  Q ++ K+ N R +V    ++  +  E+F S 
Sbjct: 390 ELQANTRITQKVEVVDPKDKEFRLLQILKQHQQGKQKNDRILVFCLYKKEATRVENFLSR 449

Query: 518 IAI----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII-------IE 566
             I    IHG +    +   +++FK G   +L+AT V   G+D+ +  ++I       IE
Sbjct: 450 KGIRVGGIHGDLKQEQRTRSLEAFKTGQTPVLVATDVAARGLDIPEVKLVINVTFPLTIE 509

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           +        +H++ GR GR         L+      +S + +++LK 
Sbjct: 510 D-------YVHRI-GRTGRAGNTGEAHTLFTVQDKAHSGSLVNILKG 548


>gi|218132094|ref|ZP_03460898.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
 gi|217985744|gb|EEC52085.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
          Length = 392

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 159/393 (40%), Gaps = 66/393 (16%)

Query: 236 GQIALLLMRKQFKKEIGIP---INVEGKIAQKILRNIPFSPTKSQESAI------KDILQ 286
            QI L+LM   + K   +    +N+   I + I      +PT  Q  AI      KDIL 
Sbjct: 4   AQIILMLMFLAYSKTTFMTFKDLNITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILG 63

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIMAPIGILAQQHYEF 340
                           G+GKT    I +   ++A        +A+I+ P   LA Q  E 
Sbjct: 64  ------------CAQTGTGKTAAFAIPIIQQLQADKSLNNSIKALILTPTRELALQISEC 111

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--YYKLILV 398
           I  Y + TQ+   +I G + Q  +   L    H    I++ T     D +   Y +L  +
Sbjct: 112 IDDYAKYTQVRHGVIFGGVNQRTQVNML----HKGVDILVATPGRLLDLMNQGYVRLNNI 167

Query: 399 ---IVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
              ++DE  R    G    +K  L +       LL +AT +P T++  SL +  +     
Sbjct: 168 QHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLLFSAT-MPDTII--SLTNSLL----- 219

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
               ++P+K  I P +   + IE+  V   E K+   +   I  K +     V  R    
Sbjct: 220 ----KQPVKISITPKSSTVDAIEQ-TVYFVEKKEKSKLLISILHKTQGQSVLVFSRTKHN 274

Query: 511 HEHFTSSIA-------IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +     +         IHG  S   ++S +++FK+G  +++IAT +   GID+ +  ++
Sbjct: 275 ADRIVRVLGKAGIGSQAIHGNKSQNARQSALENFKSGKIRVMIATDIAARGIDINELPLV 334

Query: 564 IIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           I  +        +H++ GR GR    G  +S C
Sbjct: 335 INYDLPDVPETYVHRI-GRTGRAGNSGTALSFC 366


>gi|188575689|ref|YP_001912618.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520141|gb|ACD58086.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 614

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 133/319 (41%), Gaps = 41/319 (12%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + +++ A   +   QA+++AP   LA Q  E  +KY +      V  
Sbjct: 32  QAQTGTGKTAAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLP 91

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF 406
           + G  P A +  AL+R      H+++GT     D +        Q   L+L   DE  R 
Sbjct: 92  VYGGQPYAQQLSALKR----GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRM 147

Query: 407 G----VQQRLK-LTQKATAPHVLLMTAT--PIPRTLVLTSLGD---IDISKITEKPAGRK 456
           G    V+  LK L +K     V L +AT  P  R +  T L D   + I+  T   A  +
Sbjct: 148 GFIDDVEAVLKKLPEKR---QVALFSATMPPAIRRIAQTYLKDPAEVIIAAKTTTSANIR 204

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
                +  ++++D +   L+V   +G   +           +  ++  E      +    
Sbjct: 205 QRYWWVSGLHKLDALTRILEVEPFDGMIIF-----------ARTKAGTEELAQKLQARGL 253

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           + A I+G M    +E  +   K+G   +L+AT V   G+DV   S ++  +  +   + +
Sbjct: 254 AAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYV 313

Query: 577 HQLRGRVGRGEEISSCILL 595
           H++ GR GR       IL 
Sbjct: 314 HRI-GRTGRAGRTGDAILF 331


>gi|116872678|ref|YP_849459.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741556|emb|CAK20680.1| ATP-dependent RNA helicase DbpA family [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 470

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 129/311 (41%), Gaps = 47/311 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKT    I +A  V   E   QA+I+ P   LA Q         +  +I   
Sbjct: 40  VAKSQTGSGKTAAFAIPIAEQVVWEENKPQALIIVPTRELAMQVKTECTNIGRFKRIKAA 99

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
            I G  P A ++  L +    + HI++GT     D I+           L+L  VDE   
Sbjct: 100 AIYGQSPFAKQKLELSQ----KNHIVVGTPGRLLDHIEKGTLNVDKVAHLVLDEVDEMLS 155

Query: 406 FGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD--IDISKITEKPAGRKPIKT 460
            G   +++  L++       L  +AT P     ++    D  + I   +EK     PI  
Sbjct: 156 MGFIDQVEDILSRLPKKRQNLFFSATMPEEMQDLIKRYQDNPMVIEMASEKT---NPIFH 212

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           V +  +  ++ ++   V+++E   +  I           F +   + + L E      + 
Sbjct: 213 VEMQTDTKEKTLK--DVLITENPDSAII-----------FCNTKNQVDELSEMLDLRTSK 259

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII-----IENAEHFGLAQ 575
           IHG +   D+   MD FK+G  + LIAT V   GIDV + S++I     IE   +     
Sbjct: 260 IHGGLRQEDRFQAMDEFKSGKSRFLIATDVAGRGIDVENVSLVINYDLPIEKENY----- 314

Query: 576 LHQLRGRVGRG 586
           +H++ GR GR 
Sbjct: 315 VHRI-GRTGRA 324


>gi|50305787|ref|XP_452854.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660562|sp|Q6CT85|RRP3_KLULA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|49641987|emb|CAH01705.1| KLLA0C14608p [Kluyveromyces lactis]
          Length = 487

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 123/307 (40%), Gaps = 28/307 (9%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT    I +   +    Q   A I+AP   LAQQ  E          +    I G 
Sbjct: 113 TGSGKTAAFAIPILNQLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGG 172

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHRFGVQQRL 412
           M    + + L R    + HIII T     D ++        KL  +++DE  R      L
Sbjct: 173 MSMMDQARDLMR----KPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRL-----L 223

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEV 471
            +        +L +  T    T + ++     I K+ ++ +   P+K  +      +D +
Sbjct: 224 DMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTL 282

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNF-----RSVVERFNSLHEHFTSSIAIIHGRMS 526
           ++ L VV    K  + I    E   +S       ++  ER ++L      S   +HG ++
Sbjct: 283 VQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLN 342

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL--RGRVG 584
              +   +D FK G   +L+AT V   G+D+    I+I  +      + +H++    R G
Sbjct: 343 QNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAG 402

Query: 585 R-GEEIS 590
           R G+ IS
Sbjct: 403 RSGKSIS 409


>gi|7661920|ref|NP_055555.1| eukaryotic initiation factor 4A-III [Homo sapiens]
 gi|109118862|ref|XP_001110130.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Macaca
           mulatta]
 gi|297701955|ref|XP_002827960.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Pongo abelii]
 gi|332263899|ref|XP_003280987.1| PREDICTED: eukaryotic initiation factor 4A-III [Nomascus
           leucogenys]
 gi|20532400|sp|P38919|IF4A3_HUMAN RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           initiation factor 4A-like NUK-34; AltName:
           Full=Eukaryotic translation initiation factor 4A isoform
           3; AltName: Full=Nuclear matrix protein 265; Short=NMP
           265; Short=hNMP 265
 gi|295982193|pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
           Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
           Machinery
 gi|295982194|pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
           Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
           Machinery
 gi|13177790|gb|AAH03662.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|13325146|gb|AAH04386.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|15029856|gb|AAH11151.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|48145617|emb|CAG33031.1| DDX48 [Homo sapiens]
 gi|60655857|gb|AAX32492.1| DEAD-box polypeptide 48 [synthetic construct]
 gi|119609990|gb|EAW89584.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo
           sapiens]
 gi|119609991|gb|EAW89585.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo
           sapiens]
 gi|158254648|dbj|BAF83297.1| unnamed protein product [Homo sapiens]
 gi|168274374|dbj|BAG09607.1| eukaryotic initiation factor 4A-III [synthetic construct]
          Length = 411

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 61  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 114

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 115 TRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 167

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   P   V+L++AT     L 
Sbjct: 168 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 227

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEG 482
           +T+    D  +I  K      + IK   + + R +              I +  +  +  
Sbjct: 228 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 287

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 288 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 328

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 329 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 370


>gi|18977049|ref|NP_578406.1| ski2-like helicase [Pyrococcus furiosus DSM 3638]
 gi|18202135|sp|O73946|HELS_PYRFU RecName: Full=Putative ski2-type helicase
 gi|223365750|pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
 gi|223365751|pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
 gi|223365752|pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
 gi|223365753|pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
 gi|3374506|dbj|BAA32016.1| helicase [Pyrococcus furiosus]
 gi|18892686|gb|AAL80801.1| helicase [Pyrococcus furiosus DSM 3638]
          Length = 720

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 146/356 (41%), Gaps = 79/356 (22%)

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           +  KN ++ I      SGKTL+A IAM   +   GG+AV + P+  LA++ ++  + + +
Sbjct: 37  LEGKNALISI---PTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDW-E 92

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVD 401
              + V + TG+               G+  III T   F   +++       + +++ D
Sbjct: 93  KIGLRVAMATGDYDSKDE-------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVAD 145

Query: 402 EQHRFGVQQR-----LKLTQKATAPHVLLMTAT---------------------PIP--- 432
           E H  G + R     + L        ++ ++AT                     P+    
Sbjct: 146 EIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNPEELAEWLNAELIVSDWRPVKLRR 205

Query: 433 ----RTLVLTSLGDIDISKITEK---PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
               +  V    G ID     E+    A RK  K  +I +N +    ER+ + LS+  K+
Sbjct: 206 GVFYQGFVTWEDGSIDRFSSWEELVYDAIRKK-KGALIFVN-MRRKAERVALELSKKVKS 263

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS---------SIAIIHGRMSDIDKESVMDS 536
               P+I        R++ E  +SL E+ T+          +A  H  +   ++  V ++
Sbjct: 264 LLTKPEI--------RALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN 315

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIII--IENAEHFGLA-----QLHQLRGRVGR 585
           F+ G  K ++AT  +  GI+     +II  I     FG+      ++HQ+ GR GR
Sbjct: 316 FRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGR 371


>gi|87122849|ref|ZP_01078719.1| primosome assembly protein PriA [Marinomonas sp. MED121]
 gi|86161860|gb|EAQ63155.1| primosome assembly protein PriA [Marinomonas sp. MED121]
          Length = 743

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 24/193 (12%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           NVE    QK    +P +    Q  A+  ++  +++ N  + +L G  GSGKT + L  + 
Sbjct: 197 NVEHHGHQK---EVPHTLNAEQAQALDTLMPKLNEFN--VSLLDGITGSGKTEIYLRLIE 251

Query: 316 AAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             ++   Q +++ P IG+  Q    F  ++  NT I+  ++  NM    R  A       
Sbjct: 252 KMIQQDKQTLVLVPEIGLTPQTLKRFENRF--NTDIV--LLHSNMNDRERLDAWLMARQS 307

Query: 375 QAHIIIGTHA-LFQDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHV 423
           +A +IIGT + +F   +    L L+I+DE+H          R+  +    +  KA    V
Sbjct: 308 KAKVIIGTRSGIF---VPCPDLGLIIIDEEHDSSYKQQEGFRYHARDLALVRAKAAQVPV 364

Query: 424 LLMTATPIPRTLV 436
           +L +ATP   +L+
Sbjct: 365 ILGSATPCFESLL 377


>gi|311747002|ref|ZP_07720787.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Algoriphagus sp.
           PR1]
 gi|126578701|gb|EAZ82865.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Algoriphagus sp.
           PR1]
          Length = 418

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 500 FRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           F S  E+   L++       +   H  +  I++E +M  FKN + K+LI T +I  GIDV
Sbjct: 248 FASTKEKVKGLYKKLRKDFEVEAFHSDLEQIEREKIMSGFKNKSIKILIGTDIISRGIDV 307

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           V   ++I  +        +H++ GR  R ++    I   +P
Sbjct: 308 VGIELVINFDTPSDPEDYVHRV-GRTARADKEGEAITFVNP 347


>gi|39995599|ref|NP_951550.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|39982362|gb|AAR33823.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|298504618|gb|ADI83341.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
          Length = 450

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 149/357 (41%), Gaps = 51/357 (14%)

Query: 257 VEGKIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT----L 308
            E K+A  IL+ +       PT  Q +A+   L+++     +L   Q   G+GKT    L
Sbjct: 4   AELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVD----LLATAQ--TGTGKTAAFVL 57

Query: 309 VALIAMAAAVEAGGQA---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
            AL  +++  +  G+    +++ P   LAQQ  + ++ Y    ++    I G MP     
Sbjct: 58  PALQRLSSPPQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPY---- 113

Query: 366 KALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            A  R+       I+ T     D     S+   +L L+++DE  R        L    + 
Sbjct: 114 HAQLRLLSAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDEADRM-------LDMGFSD 166

Query: 421 PHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE-RLKVV 478
               +  A+P  R TL+ T+  D  ++++  +   R+P +  I       E IE RL V 
Sbjct: 167 DVDRIAAASPATRQTLLFTATMDSAMARLAGRLL-REPERIDIAGTKTTHEHIEQRLHVA 225

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----------SIAIIHGRMSDI 528
                K   +   I +  ES  R+++  F++      +          S A +HG M   
Sbjct: 226 DDLHHKNRLLRHLITD--ESLRRAII--FSATKRDAENLALELKAQGHSAAALHGDMPQN 281

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            +   + + K G  +LL+AT V   G+DV   S +I  +   F    +H++ GR GR
Sbjct: 282 ARNRTIAAMKQGRIRLLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRI-GRTGR 337


>gi|332637958|ref|ZP_08416821.1| putative ATP-dependent RNA helicase [Weissella cibaria KACC 11862]
          Length = 524

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 134/313 (42%), Gaps = 46/313 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + +   ++      QA++++P   LA Q  + + K  ++ ++ V+
Sbjct: 42  IGQAQTGTGKTAAFGLPILNMIDTDSNQVQALVVSPTRELAIQTQDELFKLGRDKRVKVQ 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
            + G    A  R+ +  ++HG AHI++GT     D I            L+L   DE   
Sbjct: 102 AVFGG---ADIRRQINGLSHG-AHIVVGTPGRLIDHINRGTINLSNVKTLVLDEADEMLN 157

Query: 406 FGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  + ++   KA       LL +AT  P      ++  I +  +TE      P    I 
Sbjct: 158 MGFLEDIESILKAVPDQRQTLLFSATMPP------AIKRIGVQFMTE------PEHIQIA 205

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI----- 518
                 +++E+  V + + +K +     I + ++     +  R     +  T  +     
Sbjct: 206 AKELTTDLVEQYYVRVRDFEK-FDTLTHILDVQQPKLAIMFGRTKRRVDELTRGLELRGF 264

Query: 519 --AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFG 572
             A IHG ++   +  V+  FKNG  K+L+AT V   G+DV     +    I +++E + 
Sbjct: 265 NAAGIHGDLTQQKRSQVLKQFKNGEIKILVATDVAARGLDVSGVDYVYNFDIPQDSESY- 323

Query: 573 LAQLHQLRGRVGR 585
              +H++ GR GR
Sbjct: 324 ---VHRI-GRTGR 332


>gi|223043299|ref|ZP_03613346.1| ATP-dependent rna helicase, dead/deah box family [Staphylococcus
           capitis SK14]
 gi|222443510|gb|EEE49608.1| ATP-dependent rna helicase, dead/deah box family [Staphylococcus
           capitis SK14]
          Length = 447

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 164/376 (43%), Gaps = 68/376 (18%)

Query: 270 PFSPTKSQESAIKDILQDMS------QKNRML-RILQG-------DVGSGKT---LVALI 312
           PF      ES IK + QD++       +NR++ RIL+G         G+GKT   L+ LI
Sbjct: 5   PFEHFNLDESLIKAV-QDLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKTHSFLLPLI 63

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYE---FIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            M        QA+++AP   LAQQ ++    + K+ Q  ++ V++  G       ++   
Sbjct: 64  QMIDVDLQEPQAIVVAPTRELAQQLFQAASHLCKFKQ--EVNVKLFIGGTDIEKDKQRCN 121

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH---RFGVQQRL-----KLTQ 416
           R    Q  +IIGT     D  Q   L       +IVDE       G+ + +     +L  
Sbjct: 122 R----QPQLIIGTPTRINDLAQGGHLHAHLASNLIVDEADLMIDLGLIEDVDYIAARLND 177

Query: 417 KATAPHVLLMTATPIPRTL---VLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDE 470
           +A   H+ + +AT IP++L   +   L   +  ++  K   +K I+  +IP     ++D+
Sbjct: 178 EA---HIAVFSAT-IPKSLQPFLNKYLSQPEFVEVDHKSHNKKNIEFYLIPTKGTAKVDK 233

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            +  + ++        ++C      +E+      E  +SL++     + +IHG ++  ++
Sbjct: 234 TLNLIDILNP------YLCIIFCNSREN----ANELADSLNKEGIK-VGMIHGGLTPRER 282

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII---IENAEHFGLAQLHQLRGRVGRGE 587
           +  M   +N   + +IA+ +   GID+   S +I   + N   F   ++    GR GRG 
Sbjct: 283 KQQMKRIRNLDFQYVIASDLASRGIDIEGVSHVINFDVPNDIDFFTHRV----GRTGRGN 338

Query: 588 EISSCILLYHPPLSKN 603
                I LY P    N
Sbjct: 339 YKGVAITLYSPDEEHN 354


>gi|194760837|ref|XP_001962639.1| GF14338 [Drosophila ananassae]
 gi|190616336|gb|EDV31860.1| GF14338 [Drosophila ananassae]
          Length = 1472

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 128/306 (41%), Gaps = 36/306 (11%)

Query: 302  VGSGKT-------LVALIAMAAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
             GSGKT       L  L+     +E G  QAV+++P   LA Q +   +K+   + + + 
Sbjct: 1103 TGSGKTAAFLLPILSKLLEDPQDLEIGKPQAVVVSPTRELAIQIFNEARKFGFESYLKIS 1162

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHR--- 405
            I+ G     H+ + + +      H++I T     D      I +     V++DE  R   
Sbjct: 1163 IVYGGTSFKHQNECITK----GCHVLIATPGRLLDFVDRTFITFNDTRFVVLDEADRMLD 1218

Query: 406  --FGVQQRLKLTQKAT-APHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIK 459
              F    R  +T +   + H  LM +   P   + L    L +     I         ++
Sbjct: 1219 MGFSESMRKIMTHRTMRSEHQTLMFSATFPEEIQRLAGEFLNNYVFVTIGVVGGACSDVQ 1278

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
              I  +N+ ++   +L  +L E      +   +E K+ ++F   +  F S  E  T+SI 
Sbjct: 1279 QTIYEVNKFNKR-SKLMEILREDANGTIVF--VETKRGADF---LASFLSETEFPTTSI- 1331

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              HG      +E  +  FK G  K+LIAT+V   G+D+ +   ++  +  +     +H++
Sbjct: 1332 --HGDRLQSQREQALRDFKTGKMKVLIATSVAARGLDIKNVKHVVNFDMPNNIADYVHRI 1389

Query: 580  RGRVGR 585
             GR GR
Sbjct: 1390 -GRTGR 1394


>gi|154150356|ref|YP_001403974.1| Hef nuclease [Candidatus Methanoregula boonei 6A8]
 gi|153998908|gb|ABS55331.1| helicase domain protein [Methanoregula boonei 6A8]
          Length = 745

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 22/146 (15%)

Query: 302 VGSGKTLVALIAMAAAV-EAGGQAVIMAPIGILAQQHYEFIKKY------TQNTQIIVEI 354
            G GKT +AL+  A+ +   GG+ +++AP   L +QH  F +KY      T        +
Sbjct: 38  TGLGKTAIALLVAASRLYNEGGKVLMLAPTKPLVEQHLRFFEKYLIAKSPTAPDACQFAM 97

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHR-FGV 408
            TG  P   R    ER     + +I  T  + ++ +         + L+IVDE HR  G 
Sbjct: 98  FTGEAPPTERTAEWER-----SQVIFATPQVVKNDLIAGRYTLQDVALLIVDECHRAVGN 152

Query: 409 QQRLKLTQK----ATAPHVLLMTATP 430
              + L ++    A  P +L MTA+P
Sbjct: 153 YAYVFLARRYHDTAAKPLLLAMTASP 178


>gi|148272372|ref|YP_001221933.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830302|emb|CAN01236.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 509

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 135/309 (43%), Gaps = 35/309 (11%)

Query: 297 ILQGDVGSGKT----LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           I Q   G+GKT    L  +  +    E G QA+++ P   LA Q  E ++  T++    V
Sbjct: 42  IGQAKTGTGKTFGFGLPLIQRLGLTPEPGVQALVVVPTRELAVQVTEDLQIATKHRATTV 101

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYK-LILVIVDEQH 404
             I G   +A+  + +E++  G A I++GT     D       S+Q  + ++L   D+  
Sbjct: 102 VSIYGG--KAYEGQ-IEQLKAG-AQIVVGTPGRLLDLVGQRLLSLQNVREMVLDEADKML 157

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGDIDIS-KITEKPAG--RKPI 458
             G    ++    Q     H +L +AT P P   +        I  + T+   G  +  I
Sbjct: 158 DLGFLSDIEKLFAQTPAVRHTMLFSATMPGPIVALARRFMTKPIHIRATDPDEGLMQANI 217

Query: 459 KTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           + ++   + +D  EVI R+      GK   +        K +  R +VE  N     F +
Sbjct: 218 RHLVYRAHNMDKDEVIGRILQAEGRGKTVIFT-----RTKRAAAR-LVEELND--RGFNA 269

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             A +HG ++   +E  M +FK G   +LIAT V   GIDV+D + +I         A L
Sbjct: 270 --AAVHGDLNQEQRERAMAAFKAGKKDILIATDVAARGIDVLDVTHVINHTIPEDDKAYL 327

Query: 577 HQLRGRVGR 585
           H++ GR GR
Sbjct: 328 HRV-GRTGR 335


>gi|152995484|ref|YP_001340319.1| ATP-dependent DNA helicase RecQ [Marinomonas sp. MWYL1]
 gi|150836408|gb|ABR70384.1| ATP-dependent DNA helicase, RecQ family [Marinomonas sp. MWYL1]
          Length = 651

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 28/224 (12%)

Query: 386 FQDSIQYYKLILVIVDEQH---RFGVQQR---LKL---TQKATAPHVLLMTATPIPRTLV 436
           F+  I+   + +++VDE H    +G   R   LKL    Q+   P VLL+TAT   R   
Sbjct: 127 FRRFIKRVPISMLVVDEAHCISEWGHNFRPDYLKLPSYQQELAIPLVLLLTATATRRVQR 186

Query: 437 -LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +     I    I +    R  +   +IPI R  E +  LK VL++ + A  +    ++ 
Sbjct: 187 DMAQKFAIYPEHIVQTGFYRHNLDIDLIPIQR-HEKLSTLKNVLNDTQGASIVYVTQQKT 245

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E   R+       L     S++A   G  SDI + ++   F N   ++++AT    +GI
Sbjct: 246 AEDVARA-------LQADGYSAVAYHAGLNSDI-RSAIQADFMNSKTRIIVATIAFGMGI 297

Query: 556 DVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILL 595
           D  D  +++     HF L +      Q  GR GR  + S C++L
Sbjct: 298 DKSDIRLVV-----HFDLPKSIENYSQEIGRAGRDNQPSRCVML 336


>gi|170728747|ref|YP_001762773.1| primosomal protein N' [Shewanella woodyi ATCC 51908]
 gi|169814094|gb|ACA88678.1| primosomal protein N' [Shewanella woodyi ATCC 51908]
          Length = 731

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 10/148 (6%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +L   P +    Q  A+  + Q   Q      +L+G  GSGKT V L  + + ++ G QA
Sbjct: 194 VLGEDPLTLNPEQAIAVATLNQ---QSGYHCTLLEGITGSGKTEVYLSLLESVLKQGKQA 250

Query: 325 VIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +I+ P IG+  Q     I ++     + V +I   +    R  A      G+A IIIGT 
Sbjct: 251 LILVPEIGLTPQT----ISRFKSRFNVTVAVIHSGLTDNQRLTAWRLAKTGEAAIIIGTR 306

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           +     + +   I  I+DE+H    +Q+
Sbjct: 307 SALFTPMAFPGTI--ILDEEHDSSFKQQ 332


>gi|325688758|gb|EGD30767.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK115]
          Length = 447

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 149/358 (41%), Gaps = 44/358 (12%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAV 318
           Q+ LR++ F   T  QE  I  +L       R L + +   GSGKT   L+ +  M    
Sbjct: 13  QEALRDLNFVEATPVQEKLIPVVLS-----GRDL-VGESKTGSGKTHTFLLPIFQMLDEE 66

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               QAVI AP   LA Q Y+  ++       +I V    G   +A +   LE     Q 
Sbjct: 67  ADSVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGKLE---SSQP 123

Query: 377 HIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           HI+IGT     D ++      +K    +VDE         L +   AT   +    A  +
Sbjct: 124 HIVIGTPGRIYDLVESGDLAIHKAKTFVVDE-----ADMTLDMGFLATVDKI----AGRL 174

Query: 432 PRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGK---- 483
           P+ L           K+  +P  +K    P+   I     I + IE   ++ ++G+    
Sbjct: 175 PKDLQFLVFSATIPQKL--QPFLKKYLSNPVIEQIKTKTVIADTIENW-LLSTKGRNKNA 231

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           + Y I   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN 
Sbjct: 232 QIYQISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|299531311|ref|ZP_07044721.1| primosomal protein N' [Comamonas testosteroni S44]
 gi|298720718|gb|EFI61665.1| primosomal protein N' [Comamonas testosteroni S44]
          Length = 733

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 18/149 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAP-IGILAQQHYEFIKKYT-QNTQIIV 352
           +L G  GSGKT V L A+ A ++A    QA++M P I +  Q    F+ ++  Q  +  V
Sbjct: 183 LLYGSTGSGKTEVYLRAVQAVLDANPEAQALVMVPEINLTPQLEERFVARFVPQYGKDAV 242

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH------- 404
             +   M    R K+      G+A I++GT  A+F    Q   L L++VDE+H       
Sbjct: 243 VSMHSGMTNPQRLKSWLAAHTGRARIVLGTRMAIFASVPQ---LALIVVDEEHDASYKQQ 299

Query: 405 ---RFGVQQRLKLTQKATAPHVLLMTATP 430
              R+  +       + T   V+L +ATP
Sbjct: 300 EGARYSARDLAIWRGRDTGAKVILGSATP 328


>gi|294055756|ref|YP_003549414.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615089|gb|ADE55244.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 406

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 118/294 (40%), Gaps = 30/294 (10%)

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           A  + +++ P   LA Q  E  +KY ++ Q+   +I G +    +R+ LE      A ++
Sbjct: 71  AAPRCLVLGPTRELAAQVKEQFEKYGKDAQLKCALIHGGVGYGRQRQELE----AGADVV 126

Query: 380 IGTHALFQDSIQ-----YYKLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLMT 427
           I T     D +Q        + L+I+DE  R         V++ +K   K      LL +
Sbjct: 127 IATPGRLIDHVQQRTADLRNVDLLILDEVDRMLDMGFIDDVKKIIKFCSK-QGRQTLLFS 185

Query: 428 ATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKK 484
           AT     + L+  SL D     I  K    + +K  + P+  + +    + ++ S E   
Sbjct: 186 ATVSEEIKRLIARSLKDPVEVAIAVKITPAETVKHEVYPVGAMQKFDLLVALIESMEVDS 245

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
               C           +   +R     +     +A +H  ++   +   +  FK+G  K+
Sbjct: 246 MIIFC---------RMKIGADRITRWLQQHKYKVAAMHADLNQKARNRALQDFKDGNIKI 296

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           L+AT +   G+D+ + + +I  +        +H++ GR GR +       +  P
Sbjct: 297 LVATDIASRGLDIANVTHVINYDVPEHPEDYVHRI-GRTGRAQREGDAATILAP 349


>gi|224088798|ref|XP_002308545.1| predicted protein [Populus trichocarpa]
 gi|222854521|gb|EEE92068.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 123/312 (39%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYDIVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-------YYKL-ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++       Y K+ +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 196

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V + +AT  P  L +T        K   KP        V I
Sbjct: 197 RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMNKP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 361

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 362 NYLHRI-GRSGR 372


>gi|221057271|ref|XP_002259773.1| ATP-dependent helicase [Plasmodium knowlesi strain H]
 gi|193809845|emb|CAQ40549.1| ATP-dependent helicase, putative [Plasmodium knowlesi strain H]
          Length = 722

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S A++HG ++   +E  M  F+ G  ++LIAT +   G+D+ +  ++I     ++    +
Sbjct: 427 SFAVLHGNIAQTTREHTMQRFRQGMFQILIATDIAARGLDISNVDLVIQCFPPNYAEIYI 486

Query: 577 HQLRGRVGRGEEISSCILLYHP-------PLSKNSYTRLSV--LKNTEDGFLIA 621
           H+  GR GR  +    ++L+          + KN   + S+  L N ED F  A
Sbjct: 487 HRA-GRTGRANKKGVSVVLFSSEDKQDLIKIEKNCGIKFSIEQLPNNEDVFTSA 539


>gi|224142804|ref|XP_002324737.1| predicted protein [Populus trichocarpa]
 gi|118481206|gb|ABK92554.1| unknown [Populus trichocarpa]
 gi|222866171|gb|EEF03302.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 123/312 (39%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYDVVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-------YYKL-ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++       Y K+ +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 196

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V + +AT  P  L +T        K   KP        V I
Sbjct: 197 RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMNKP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 361

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 362 NYLHRI-GRSGR 372


>gi|160380700|sp|A6SFW7|DBP2_BOTFB RecName: Full=ATP-dependent RNA helicase dbp2
          Length = 514

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 145/343 (42%), Gaps = 51/343 (14%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +     + A        G   +++AP   LA Q  + I K+ ++++I 
Sbjct: 146 AETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIR 205

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G +P+  +   +  +A G   + I T     D I+  K  L     +++DE  R 
Sbjct: 206 NTCVYGGVPKGGQ---IRDLAKG-VEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRM 261

Query: 406 ----FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KI 448
               F  Q R  L Q           AT P  +   A+      +  ++G +++S   +I
Sbjct: 262 LDMGFEPQIRKILGQIRPDRQTCMWSATWPKEVRALASDYLNEFIQVNIGSLELSANHRI 321

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           T+       I  V+    + D++ + L+ ++ +      I    +   +      + RF 
Sbjct: 322 TQ-------IVEVVSEFEKRDKMTKHLEKIMEDKDNKILIFTGTKRVADD-----ITRF- 368

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L +    +++I HG     +++ V++ FK G   +++AT V   GIDV + + +   + 
Sbjct: 369 -LRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDY 426

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            +     +H++ GR GR  +  + I L+     K +   ++VL
Sbjct: 427 PNNSEDYIHRI-GRTGRAGQKGTAITLFTTDNQKQARDLVNVL 468


>gi|163803962|ref|ZP_02197788.1| primosome assembly protein PriA [Vibrio sp. AND4]
 gi|159172230|gb|EDP57135.1| primosome assembly protein PriA [Vibrio sp. AND4]
          Length = 503

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 19/159 (11%)

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQN 347
           SQ      +L+G  GSGKT V L  +   +E G QA+++ P IG+  Q     I ++ + 
Sbjct: 213 SQTGFACYLLEGVTGSGKTEVYLNLIKPILEQGKQALVLVPEIGLTPQT----INRFKRR 268

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + V++I   +    R  A        A IIIGT +       +  L ++IVDE+H   
Sbjct: 269 FNVPVDVIHSGLNDTERLNAWLSARDKAAGIIIGTRSALLTP--FSNLGIIIVDEEHDSS 326

Query: 408 VQQRLKL-----------TQKATAPHVLLMTATPIPRTL 435
            +Q+  L             K   P ++L +ATP   TL
Sbjct: 327 YKQQDSLRYHARDVAVMRAHKEQVP-IVLGSATPALETL 364


>gi|145632079|ref|ZP_01787814.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655]
 gi|145634861|ref|ZP_01790569.1| organic solvent tolerance protein [Haemophilus influenzae PittAA]
 gi|144986986|gb|EDJ93516.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655]
 gi|145268027|gb|EDK08023.1| organic solvent tolerance protein [Haemophilus influenzae PittAA]
          Length = 619

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 133/327 (40%), Gaps = 63/327 (19%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK+L   I    A+   G  ++++P+  L +   + +    Q   I  + +  +   
Sbjct: 52  TGNGKSLCYQIP---ALCFDGLTLVISPLISLMKDQVDQL----QANGIEADFLNSSQTL 104

Query: 362 AHRRKALERIAHGQAHII------IGTHALFQDSIQYYKLILVIVDEQH---RFGVQQRL 412
             +++   ++  GQ  ++      + T++ FQ  I Y K+  + +DE H   ++G   R 
Sbjct: 105 EQQQRVQNKLISGQLKLLYVSPEKVMTNSFFQ-LISYSKVCFIAIDEAHCISQWGHDFRP 163

Query: 413 KLTQ----KATAPH--VLLMTATP-------IPRTLVLTSL----GDIDISKITEKPAGR 455
           + TQ    KA+ P   ++ +TAT        I R L L +L    G  D      +P  R
Sbjct: 164 EYTQLGGLKASFPDAPIMALTATADYATQQDILRHLNLKNLHKYIGSFD------RPNIR 217

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             ++    P+ ++        V+  +GK     C         N R+ VER      +  
Sbjct: 218 YTLEEKYKPMEQLTRF-----VLAQKGKSGIIYC---------NSRNKVERIAESLRNKG 263

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            S A  H  M    +E V   F+    ++++AT    +GI+  +   +      HF L +
Sbjct: 264 VSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFV-----AHFDLPR 318

Query: 576 ----LHQLRGRVGRGEEISSCILLYHP 598
                +Q  GR GR +  +  +L Y P
Sbjct: 319 SIESYYQETGRAGRDDLPAEAVLFYEP 345


>gi|116668333|pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
           A Resolution
          Length = 374

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 145/340 (42%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    +++   ++      QA+I+AP
Sbjct: 24  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAP 77

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +      G     +  + + ++ +GQ H++ GT     D 
Sbjct: 78  TRELAVQVQKGLLALGDYMNVQSHACIGG---TNVGEDIRKLDYGQ-HVVAGTPGRVFDM 133

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++    +   P   V+L++AT     L +T+
Sbjct: 134 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEVLEMTN 193

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGKKA 485
               D  +I  K      + IK   + + R +   + L             +  +  +K 
Sbjct: 194 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 253

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  ++L
Sbjct: 254 DWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGASRVL 294

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 295 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 333


>gi|332362965|gb|EGJ40754.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK49]
          Length = 447

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 149/358 (41%), Gaps = 44/358 (12%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAV 318
           Q+ LR++ F   T  QE  I  +L       R L + +   GSGKT   L+ +  M    
Sbjct: 13  QEALRDLNFVEATPVQEKLIPVVLS-----GRDL-VGESKTGSGKTHTFLLPIFQMLDEE 66

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               QAVI AP   LA Q Y+  ++       +I V    G   +A +   LE     Q 
Sbjct: 67  ADSVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGKLE---SSQP 123

Query: 377 HIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           HI+IGT     D ++      +K    +VDE         L +   AT   +    A  +
Sbjct: 124 HIVIGTPGRIYDLVESGDLAIHKAKTFVVDE-----ADMTLDMGFLATVDKI----AGRL 174

Query: 432 PRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGK---- 483
           P+ L           K+  +P  +K    P+   I     I + IE   ++ ++G+    
Sbjct: 175 PKDLQFLVFSATIPQKL--QPFLKKYLSNPVIEQIKTKTVIADTIENW-LLSTKGRDKNA 231

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           + Y I   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN 
Sbjct: 232 QIYQISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLRGTAITLYQP 348


>gi|170696968|ref|ZP_02888064.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170138142|gb|EDT06374.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 465

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 137/308 (44%), Gaps = 30/308 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++      QA+++ P   LA Q  + +++  +  + + V
Sbjct: 48  IAQAKTGSGKTAAFSLALLARLDTRRFDVQAMVLCPTRELADQVAQEVRRLARAEENVKV 107

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G  P   + ++LE   HG AHI++GT     D +    L L     +++DE  R  
Sbjct: 108 LTLCGGTPMRPQAQSLE---HG-AHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRM- 162

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               L +        V  M  T   +TL+ ++     I+K++++   R P K V +    
Sbjct: 163 ----LDMGFFDDIAKVARMCPT-TRQTLLFSATYPDGIAKLSQQFL-RNP-KEVKLEERH 215

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAI 520
            +  I +    ++E ++ + +   +   +        +  +   +  + LH     ++A+
Sbjct: 216 DNSKIRQRFYEVAETERLHAVGQLLNHYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALAL 275

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++ 
Sbjct: 276 -HGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI- 333

Query: 581 GRVGRGEE 588
           GR GR ++
Sbjct: 334 GRTGRADQ 341


>gi|91218309|ref|ZP_01255254.1| superfamily II DNA and RNA helicases [Psychroflexus torquis ATCC
           700755]
 gi|91183518|gb|EAS69916.1| superfamily II DNA and RNA helicases [Psychroflexus torquis ATCC
           700755]
          Length = 443

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 159/383 (41%), Gaps = 52/383 (13%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGD 301
           M KQF  ++GI  ++     Q+ L ++  S PT+ QE  I  +L     +N  L +L   
Sbjct: 1   MSKQFL-DLGINEHL-----QRSLVDLQISVPTEVQEKTIPVVLN----QNEDLVVL-SK 49

Query: 302 VGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITG 357
            GSGKT    + L+ +        Q +I+AP   L QQ Y   I   + + QI +  + G
Sbjct: 50  TGSGKTAAFGLPLLQLIDTENTSIQTLILAPTRELGQQIYNNLISFASWSDQIHIASLCG 109

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQH------RF 406
             P   + + L    +   H+++ T     D     +I    L  V++DE        +F
Sbjct: 110 GTPIKPQIENL----NSTTHLVVATPGRLLDLIKREAIDLKHLKYVVLDEADEMLSALKF 165

Query: 407 GVQQRLKLTQKATAPHVLLMTAT------PIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            V   +K   K      LL TAT       + +  +   L  I++   T    G      
Sbjct: 166 EVDTIIKAIPKTR--RTLLFTATMSGTVKQLVQNYMSKDLVTIEVDTTTLGHQGIDHHYV 223

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           V+ PI ++D ++  L      G++    C       +   +  + +F+S           
Sbjct: 224 VVEPIEKLDVLLHFLNS--KGGERGIIFCKTKAAVNKLAKKLAINKFSS---------GA 272

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG ++   ++ +M  F+ G   +L+AT +   GIDV + S ++  +      A +H+  
Sbjct: 273 IHGSLTQGIRDRIMGQFREGHIDILVATDLAARGIDVKEVSYVVNYHLPDTYEAYVHR-S 331

Query: 581 GRVGR-GEEISSCILLYHPPLSK 602
           GR  R G +  S  +L H  +++
Sbjct: 332 GRTARAGAKGLSLTILQHEEIAE 354


>gi|332218194|ref|XP_003258244.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Nomascus leucogenys]
          Length = 715

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 123/305 (40%), Gaps = 54/305 (17%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  +     T+  ++ V    G  P   +    ER+ +G   I++GT
Sbjct: 194 QVLVLAPTRELANQVSKDFSDITK--KLSVACFYGGTPYGGQ---FERMRNG-IDILVGT 247

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATA---PHVLLMT 427
               +D IQ  KL L     V++DE  +         V++ L +  K  +   P  LL +
Sbjct: 248 PGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDDPQTLLFS 307

Query: 428 AT------PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP---------INRIDEVI 472
           AT       + +  + ++   +D+        G+K  KT I             R   + 
Sbjct: 308 ATCPHWVFNVAKKYMKSTYEQVDL-------IGKKTQKTAITVEHLAIKCHWTQRAAVIG 360

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           + ++V      +    C   +E +E +  S +++              +HG +    +E 
Sbjct: 361 DVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ----------DAQSLHGDIPQKQREI 410

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            +  F+NG+  +L+AT V   G+D+ +  ++I  +      + +H+  GR GR      C
Sbjct: 411 TLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHR-SGRTGRAGRTGVC 469

Query: 593 ILLYH 597
           I  Y 
Sbjct: 470 ICFYQ 474


>gi|269959688|ref|ZP_06174068.1| Primosomal protein N'' [Vibrio harveyi 1DA3]
 gi|269835611|gb|EEZ89690.1| Primosomal protein N'' [Vibrio harveyi 1DA3]
          Length = 733

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 19/159 (11%)

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQN 347
           SQ      +L+G  GSGKT V L  +   +E G QA+++ P IG+  Q     I ++   
Sbjct: 213 SQTGFACYLLEGVTGSGKTEVYLNLIRPVLEQGKQALVLVPEIGLTPQT----INRFKHR 268

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + V++I   +    R  A        A IIIGT +       +  L ++IVDE+H   
Sbjct: 269 FNVPVDVIHSGLNNTERLNAWLSARDKAAGIIIGTRSALLTP--FADLGIIIVDEEHDSS 326

Query: 408 VQQRLKL-----------TQKATAPHVLLMTATPIPRTL 435
            +Q+  L             K   P ++L +ATP   TL
Sbjct: 327 YKQQDSLRYHARDVAVMRAHKEQVP-IVLGSATPALETL 364


>gi|218692219|ref|YP_002400431.1| primosome assembly protein PriA [Escherichia coli ED1a]
 gi|218429783|emb|CAR10607.1| Primosome factor n' (replication factor Y) [Escherichia coli ED1a]
          Length = 732

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 17/172 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L G  GSGKT V L  +   +  G QA++M P   L  Q    I ++ +     VE++ 
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEISLTPQ---TIARFRERFNAPVEVLH 277

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH--RFGVQQRLK 413
             +  + R  A  +  +G+A I+IGT  ALF     +  L ++++DE+H   +  Q+  +
Sbjct: 278 SGLNDSERLSAWLKAKNGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQEGWR 334

Query: 414 LTQKATAPH--------VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
              +  A +        ++L +ATP   TL         + ++T +    +P
Sbjct: 335 YHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARP 386


>gi|212527694|ref|XP_002144004.1| ATP dependent RNA helicase (Dbp8), putative [Penicillium marneffei
           ATCC 18224]
 gi|210073402|gb|EEA27489.1| ATP dependent RNA helicase (Dbp8), putative [Penicillium marneffei
           ATCC 18224]
          Length = 538

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 134/371 (36%), Gaps = 83/371 (22%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAP 329
           PT  Q+S I +IL+          I     GSGKT+   V ++   A    G  AV++ P
Sbjct: 131 PTAIQKSCIPEILKGKDC------IGGSRTGSGKTIAFAVPILQKWAEDPFGVFAVVLTP 184

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQ-AHIIIGTHAL 385
              LA Q +E  K  +    +   +ITG     PQA        IA  Q  H+II T   
Sbjct: 185 TRELALQIFEQFKAISAPQSLKPVLITGGTDMRPQA--------IALSQRPHVIIATPGR 236

Query: 386 FQDSIQYY---------KLILVIVDEQHRF----------GVQQRLKLTQKATAPHVLLM 426
             D I+           ++ +V++DE  R            V+  L     ++    LL 
Sbjct: 237 LADHIRTSGEDTIVGLNRVRMVVMDEADRLLTSGQGSMLPDVETCLSALPPSSERQTLLF 296

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK---------- 476
           TAT  P    L S+          +PA R PI    I       +   LK          
Sbjct: 297 TATVTPEVRALKSM---------PRPANRPPIHVTEIGTENHAPIPPTLKQTYLQVPMTH 347

Query: 477 ------VVLS----EGKKAYWICPQIEEKK--ESNFRSVVERFNSLHEHFTSSIAIIHGR 524
                 V+LS      K A   C +       E   R +  R  SLH     S       
Sbjct: 348 REAFLHVLLSTERNSTKPAIIFCNRTRTADLLERILRRLSHRVTSLHSLLPQS------- 400

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
               ++ + +  F+    +LL+AT V   G+D+ + S++I  +        +H++ GR  
Sbjct: 401 ----ERTANLSRFRASAARLLVATDVASRGLDIPNVSLVINFDVPRNPDDYVHRV-GRTA 455

Query: 585 RGEEISSCILL 595
           R       + L
Sbjct: 456 RAGRTGESVTL 466


>gi|294657726|ref|XP_460025.2| DEHA2E16632p [Debaryomyces hansenii CBS767]
 gi|218511815|sp|Q6BP45|ROK1_DEBHA RecName: Full=ATP-dependent RNA helicase ROK1
 gi|199432904|emb|CAG88281.2| DEHA2E16632p [Debaryomyces hansenii]
          Length = 550

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 95/440 (21%), Positives = 186/440 (42%), Gaps = 57/440 (12%)

Query: 260 KIAQKILRNI---PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           K+ +K+L N+    F+ PT  Q+ AI      +S + R L I     GSGKTL  LI + 
Sbjct: 120 KLDKKLLSNLIDAGFTEPTPIQDEAIP-----ISLEGRDL-IACAPTGSGKTLAFLIPLV 173

Query: 316 AAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             +          G + +I++P   LA Q ++ +   T+  ++ + I++  +      K 
Sbjct: 174 QTILQSNPNVKNYGIRGLIISPTNELAVQIFQELNTMTKGKKMKIGILSKQLANKINNKI 233

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPH 422
              I   +  I++ T     DSI+   + L     +++DE  +   Q  ++ T +     
Sbjct: 234 ---INSSKYDILVSTPLRLIDSIKNETISLSKVEQLVIDETDKLFDQGFVEQTDE----- 285

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAG---RKPIKTVIIPINRIDEVIERLKVVL 479
            +L   T    T +  S+    I    E+ A    + PI+ +I         IE+  V  
Sbjct: 286 -ILSNCT---NTKLRKSMFSATIPSGVEEMAQSIMKDPIRVIIGHKEAASNTIEQKLVFT 341

Query: 480 SEGKKAYWICPQIEEKKESN-----FRSVVERFNSL-HEHFTS--SIAIIHGRMSDIDKE 531
              +       Q+ ++ E       F   + R  +L HE      ++ +IH   +   ++
Sbjct: 342 GNEEGKLLAIRQMIQQGEFKPPIIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQRD 401

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            V+  FK+G   +LI T VI  G+D    +++I  +      A +H++ GR GRG +   
Sbjct: 402 EVIKRFKSGDIWVLITTDVIARGVDFKGVNLVINYDVPQSAQAYVHRI-GRTGRGGKAGK 460

Query: 592 CILLYHPPLSKNSYTRLSVLKNT--EDGFLIAEEDLKQRKEGEILGIKQ--------SGM 641
            +  +     K     ++V+K +  E G+    ED+ +  + E   +K+        S +
Sbjct: 461 AVTFFTKEDDKAVKPIINVMKQSGCESGYSGWLEDMHKLSKNEKKDVKKHEIKRKQISTV 520

Query: 642 PKFLIAQPELHDSLLEIARK 661
           PK +  + +  + +++ +++
Sbjct: 521 PKIMKQKRKQREEMIDASKR 540


>gi|195938012|ref|ZP_03083394.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4024]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 128/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR- 405
              + G  P   +R +L+       HII+ T       L +D++    L  +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKDTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|147779855|emb|CAN61608.1| hypothetical protein VITISV_040122 [Vitis vinifera]
          Length = 413

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 123/312 (39%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-------YYKL-ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++       Y K+ +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 196

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++        +   V + +AT  P  L +T        K   KP        V I
Sbjct: 197 RGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR-------KFMNKP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 361

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 362 NYLHRI-GRSGR 372


>gi|328706401|ref|XP_001950362.2| PREDICTED: putative ATP-dependent RNA helicase Pl10-like
           [Acyrthosiphon pisum]
          Length = 681

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 98/435 (22%), Positives = 172/435 (39%), Gaps = 94/435 (21%)

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG-------------KI 261
           A + +WT P       +E L G  +  +    FK    IP+   G             K+
Sbjct: 146 APNQDWTKPLPPDERLEEELFGNNSTGI---NFKNYEDIPVEATGEDIPSHIDTFDDIKL 202

Query: 262 AQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM--- 314
              I  NI  +    PT  Q+ AI  I+       R   +     GSGKT   L+ +   
Sbjct: 203 TDIIRMNIALTRYDTPTPVQKYAIPIIV------GRRDVMACAQTGSGKTAAFLVPILNQ 256

Query: 315 -----AAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
                 AA   G +          +I+AP   LA Q Y+  KK+   +++   ++ G   
Sbjct: 257 IYEKGPAAYNVGPKLQSRRKYPLGLILAPTRELATQIYDEAKKFAYRSRVRPCVVYGG-- 314

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-----FGVQQ 410
            +H    +  +  G  H+++ T     D ++  K+ L     +++DE  R     F  Q 
Sbjct: 315 -SHVMDQIRDLEQG-CHLLVATPGRLVDMLERGKIGLDFCRYLVLDEADRMLDMGFETQI 372

Query: 411 RLKLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           R ++ +K + P       L+ +AT  P+ + + +   +D                + + I
Sbjct: 373 R-RIVEKDSMPPPGDRQTLMFSAT-FPKEIQMLARDFLD--------------NYIFLAI 416

Query: 466 NRIDEVIERL--KVVLSE--GKKAYWI-----CPQIEEKKESNFRSVVER---FNSLHEH 513
            R+    E +  K+V  E   K++Y +      P   +  ES     VE     +SL E 
Sbjct: 417 GRVGSTSENITQKIVWVEDRNKRSYLLDLLNATPIRSKPAESLILVFVETKKGADSLEEF 476

Query: 514 FTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             S+   +  IHG  +  ++E  + SF++G   +L+AT V   G+D+   + +I  +   
Sbjct: 477 LYSNGYPVTSIHGDRTQREREDALKSFRSGNTPVLVATAVAARGLDIPHVTHVINYDLPS 536

Query: 571 FGLAQLHQLRGRVGR 585
                +H++ GR GR
Sbjct: 537 DVEEYVHRI-GRTGR 550


>gi|298694082|gb|ADI97304.1| putative helicase [Staphylococcus aureus subsp. aureus ED133]
          Length = 360

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 161/369 (43%), Gaps = 74/369 (20%)

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           A +   ++ F  ++ Q  A + I++ +  +  +L  L    G+GKT +    +  A   G
Sbjct: 16  ASQAYYHLSFELSEQQSYASEHIVRAIRMRQTIL--LYAVTGAGKTEMMFQGIQYARRQG 73

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA----- 376
               I++P                    ++VEI +  +  A   + ++ I H Q+     
Sbjct: 74  DNIAIVSP-----------------RVDVVVEI-SKRIKDAFLNEDID-ILHQQSSQQFE 114

Query: 377 -HIIIGT-HALFQDSIQYYKLILVIVDEQHRF------GVQQRLKLTQKATAPHVLLMTA 428
            H ++ T H L++   Q++  I +  DE   F       +QQ LK + K      + MTA
Sbjct: 115 GHFVVCTVHQLYRFK-QHFDTIFI--DEVDAFPLSMDKSLQQALKSSSKVEHA-TIYMTA 170

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI--------NRIDEVIERLKVVLS 480
           TP P+ L    L +I    I + PA R   K++ +P         N+I +++ R+     
Sbjct: 171 TP-PKQL----LSEIPNENIIKLPA-RFHKKSLPVPKYRYFKLNNNKIQKMLYRI----- 219

Query: 481 EGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
                  +  QI  ++ +     N  ++++ F S+++   + +  IH    D+ +   ++
Sbjct: 220 -------LQDQINNQRYTLVFFNNIETMIKTF-SVYKQKITKLTYIHS--EDVFRFEKVE 269

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI-SSCIL 594
             +NG   ++  TT++E G  + +  +++I+ A  +    L Q+ GRVGR  E  +  +L
Sbjct: 270 QLRNGHFDVIFTTTILERGFTMANLDVVVID-AHQYTQEALIQIAGRVGRKLECPTGKVL 328

Query: 595 LYHPPLSKN 603
            +H  +S N
Sbjct: 329 FFHEGVSMN 337


>gi|241148964|ref|XP_002405951.1| ATP-dependent helicase (DEAD box), putative [Ixodes scapularis]
 gi|215493784|gb|EEC03425.1| ATP-dependent helicase (DEAD box), putative [Ixodes scapularis]
          Length = 685

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG  S  +++ V++ F++G   +L+AT V   G+DV D   +I  +  H     +H++
Sbjct: 416 CIHGDKSQSERDWVLNEFRSGRSPILVATDVAARGLDVDDIRFVINYDYPHCSEDYIHRI 475

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GR  R  +  +    + P   K +   ++VLK
Sbjct: 476 -GRTARSNKTGTAYTFFTPGNMKQAKELIAVLK 507


>gi|213028845|ref|ZP_03343292.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 46

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/38 (55%), Positives = 29/38 (76%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           +I ++HGRM   +K++VM +FK G   LL+ATTVIEVG
Sbjct: 2   NIGLVHGRMKPAEKQAVMQAFKQGELHLLVATTVIEVG 39


>gi|213409157|ref|XP_002175349.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Schizosaccharomyces japonicus yFS275]
 gi|212003396|gb|EEB09056.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Schizosaccharomyces japonicus yFS275]
          Length = 672

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 157/380 (41%), Gaps = 58/380 (15%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMA 315
           Q  L+ + +  P+  Q +AI  +LQ    +N ++ I   + GSGKT      LV  I+  
Sbjct: 268 QATLKKVKYKEPSAIQRAAIPLLLQ----RNDIIGI--AETGSGKTAAFVIPLVTHISRL 321

Query: 316 AAVEA-----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            A++      G  A+I+AP   LAQQ      K+++   +    + G    A   ++ + 
Sbjct: 322 PALDDTNMHLGPYAIILAPTRELAQQIQVEASKFSEPLGLRCVAVVGG--HAFEEQSFQ- 378

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATAP- 421
           ++ G AHI++ T     D ++    +L     V++DE  R    G ++ +     +  P 
Sbjct: 379 MSQG-AHIVVATPGRLVDCLERRVFVLSQCYFVVMDEADRMVDMGFEEDVNKALTSLPPS 437

Query: 422 -----------HVLLMTATPI-PRTLVLTSLGDIDISKITEKPAGR---KPIKTVIIPIN 466
                        LL +  P   R  V+ S     +    E  A R   KPI   I  I 
Sbjct: 438 GHDDDEAMVAGEDLLRSTRPTRARQTVMFS---ATLPTRVENLAKRYLNKPIMLTIGTIG 494

Query: 467 R-IDEVIERLKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSI 518
           + +D V +R++++  + K+   +   +   + +       N +   E       +    +
Sbjct: 495 QAVDRVEQRVEMIADDAKRRKRLEEILNTNRYAPPIVVFVNLKRNCESLAKALYNMGWRV 554

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG  S   +E  ++  +N +  +L+AT +   GID+ + S+++  N         H+
Sbjct: 555 VTLHGSKSQEQRERAIEQLRNHSADILVATDLAGRGIDIPNVSLVVNYNMAKSIEDYTHR 614

Query: 579 LRGRVGRGEEISSCILLYHP 598
           + GR GR  +  + I    P
Sbjct: 615 I-GRTGRAGKHGTAITFLGP 633


>gi|225429488|ref|XP_002278119.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296081635|emb|CBI20640.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 123/312 (39%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-------YYKL-ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++       Y K+ +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 196

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++        +   V + +AT  P  L +T        K   KP        V I
Sbjct: 197 RGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR-------KFMNKP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 361

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 362 NYLHRI-GRSGR 372


>gi|63139086|gb|AAY33860.1| eukaryotic initiation factor 4A [Pennisetum glaucum]
          Length = 414

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 124/312 (39%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 82  IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 141

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++   L        +L   DE   
Sbjct: 142 ACVGGTSV----REDQRILASGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLS 197

Query: 406 FGVQQRL-KLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + Q   A   V + +AT  P  L +T        K   KP        V I
Sbjct: 198 RGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEITR-------KFMNKP--------VRI 242

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K      +K  W    + +  E+          N R  V+        
Sbjct: 243 LVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 302

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 303 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 362

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 363 NYLHRI-GRSGR 373


>gi|115474113|ref|NP_001060655.1| Os07g0681600 [Oryza sativa Japonica Group]
 gi|33146670|dbj|BAC80016.1| putative ATP-dependent DNA helicase recQ [Oryza sativa Japonica
           Group]
 gi|113612191|dbj|BAF22569.1| Os07g0681600 [Oryza sativa Japonica Group]
 gi|215707030|dbj|BAG93490.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 886

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 131/338 (38%), Gaps = 45/338 (13%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           ++I+Q + +    L ++    GSGK++   I      +    AV+++P+  L Q     +
Sbjct: 19  REIIQKVLEGRDCLVVMA--TGSGKSICYQIPPLVTKKT---AVVVSPLLSLMQDQVMSL 73

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
           K++   ++ +    T         K    + +      +   + F  ++Q   + L+ VD
Sbjct: 74  KQHGVKSEYLGSTQTDISVSGQAEKGAFDVLYMTPEKAVSLPSRFWSNLQAAGICLLAVD 133

Query: 402 EQH---RFGVQQRLKLTQK-------ATAPHVLLM-TATPIPRTLVLTSLGDIDISKITE 450
           E H    +G   R +  Q           P V L  TAT   R  + TSL  + I  I  
Sbjct: 134 EAHCISEWGHDFRTEYKQLHMLRDLLVGVPFVALTATATQRVRGDIATSL-TLRIPHIVV 192

Query: 451 KPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
               R  +   +   NR    I+E+++ +    + G      C  I E ++         
Sbjct: 193 GSFDRPNLFYGVKSCNRSMAFINELVKDVSKNCTVGGSTIIYCTTIRETEQ--------- 243

Query: 507 FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
              +HE   ++    +I HGRM +  +E    SF      +++AT    +GID  D   +
Sbjct: 244 ---VHEALVAAGIKSSIYHGRMGNKAREESHRSFVRDEVLVMVATIAFGMGIDKPDVRCV 300

Query: 564 IIENAEHFG----LAQLHQLRGRVGRGEEISSCILLYH 597
           I     H+G    L   +Q  GR GR    S C L Y 
Sbjct: 301 I-----HYGCPKSLESYYQESGRCGRDGLPSVCWLYYQ 333


>gi|300870448|ref|YP_003785319.1| primosomal protein N [Brachyspira pilosicoli 95/1000]
 gi|300688147|gb|ADK30818.1| primosomal protein N [Brachyspira pilosicoli 95/1000]
          Length = 664

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 90/190 (47%), Gaps = 18/190 (9%)

Query: 277 QESAIKDILQDMSQKNRMLR-ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           QES +  IL+ + ++ +    +L G  GSGKT V L A+   V+ G QA+++ P   L  
Sbjct: 127 QESVLNTILKSIEEEKKSKSFLLHGVTGSGKTEVYLQAIKRVVDLGKQAIVILPEISLTP 186

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
           Q    IK++ +  +  + ++   +    + +  + I + +  I+IG   A+F  +     
Sbjct: 187 QT---IKRFAERFEGKIAVLHSKLSPTAKYRYWQMIRNNEIKIVIGARSAIFSPTPN--- 240

Query: 395 LILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L ++++DE+H          R+  +Q     ++     ++L +ATP   +      G I+
Sbjct: 241 LGIIVIDEEHETSYKSNETPRYHARQIAFYRKERENATLILGSATPSLESYYHALNGTIE 300

Query: 445 ISKITEKPAG 454
           +  +T++ A 
Sbjct: 301 LLTLTKRAAS 310


>gi|264680431|ref|YP_003280341.1| hypothetical protein CtCNB1_4299 [Comamonas testosteroni CNB-2]
 gi|262210947|gb|ACY35045.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 469

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 129/309 (41%), Gaps = 34/309 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I Q   GSGKT    + M   +       QA+++ P   LA Q    I++  +    I V
Sbjct: 55  IAQASTGSGKTAAFGLPMVDRLNPRWFAVQALVLCPTRELADQVATEIRRLARAQDNIKV 114

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G +P  ++  +LE      AHI++GT     D ++  KL +     +++DE  R  
Sbjct: 115 VTVYGGVPSRNQIASLEN----GAHIVVGTPGRVMDLMERGKLDIGNLKTLVLDEADRML 170

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS--LGDIDISKI-TEKPAGRKPIK 459
              F       + Q       LL +AT       L S  + D    K+ T+  AG+   +
Sbjct: 171 DMGFLGDIETVVRQCPADRQTLLFSATYPDGIASLASRFMRDPQTVKVATQHSAGKIAQR 230

Query: 460 TVIIPI-NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
              +    ++  V + L     E   A+    Q         R VV   + L     S++
Sbjct: 231 WYEVGTREKVSTVAKLLAHFRPESSIAFCNTKQ-------QCRDVV---SELQAQGFSAL 280

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+  G +   +++ V+  F N +C +L+AT V   G+D+ D S +I  +        +H+
Sbjct: 281 ALF-GELEQRERDEVLVQFANKSCSVLVATDVAARGLDIADLSAVINVDVTPDPEVHIHR 339

Query: 579 LRGRVGRGE 587
           + GR GRG+
Sbjct: 340 I-GRTGRGD 347


>gi|240948373|ref|ZP_04752759.1| primosome assembly protein PriA [Actinobacillus minor NM305]
 gi|240297412|gb|EER47953.1| primosome assembly protein PriA [Actinobacillus minor NM305]
          Length = 736

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 9/118 (7%)

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQN 347
           +QK+    +L G  GSGKT V L  +   ++ G Q +++ P IG+  Q     I+++   
Sbjct: 214 AQKDFGCFLLNGVTGSGKTEVYLQFIEEVLQRGKQVLVLVPEIGLTPQT----IQRFQAR 269

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH 404
             + ++ +  ++ +  R     R  +G++ I+IGT  ALF    Q+  L  +I+DE+H
Sbjct: 270 FNVEIDALHSHLNETERLNVWLRAKYGESAIVIGTRSALF---TQFKDLGAIIIDEEH 324


>gi|152993738|ref|YP_001359459.1| ATP-independent RNA helicase DbpA [Sulfurovum sp. NBC37-1]
 gi|151425599|dbj|BAF73102.1| ATP-independent RNA helicase DbpA [Sulfurovum sp. NBC37-1]
          Length = 453

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 136/323 (42%), Gaps = 46/323 (14%)

Query: 299 QGDVGSGKTLVALI--AMAAAVEAGG-QAVIMAPIGILAQQHYEFIKK---YTQNTQIIV 352
           Q   GSGKTL   I   M   V++   Q +++ P   LA+Q    ++K   Y  N +I+ 
Sbjct: 46  QSKTGSGKTLAFGIPAVMGTDVKSNKPQTIVITPTRELAEQVAMELRKIAAYKANLKILT 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P    R   + +A G AHI+IGT    QD +    L L     +++DE  R  
Sbjct: 106 --LYGGVP---LRAQADSLAKG-AHILIGTPGRIQDHLAKGTLTLESIKTLVLDEADRML 159

Query: 407 --GVQQRLKLTQKATAP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
             G  + + +   +  P     LL +AT  P+   + SL          K   + P+   
Sbjct: 160 DMGFYEEI-IKIGSNMPKQKQTLLFSATFPPK---IESLA---------KALLKDPL--- 203

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFT 515
            I ++ + E ++  ++V     K   +   I   K        N ++ V       +   
Sbjct: 204 TIKVDTVQEAMKINELVYETPDKFKTLNALIGSYKPDSLLIFCNTKAEVISLADRLQQRG 263

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            S+  IHG +   ++   +  F N + ++++AT V   G+D+ D S++I  +        
Sbjct: 264 HSVIDIHGDLDQRERNEAVILFSNRSKRIMVATDVASRGLDIKDISLVINYDLPFDKEVY 323

Query: 576 LHQLRGRVGRGEEISSCILLYHP 598
            H++ GR GR +     I LY P
Sbjct: 324 THRI-GRTGRADATGMAISLYAP 345


>gi|120564782|gb|ABM30180.1| VASA2n [Paragonimus westermani]
          Length = 606

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 145/360 (40%), Gaps = 78/360 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-------------AMAAAVE 319
           PT  Q+ AI  I       NR L +     GSGKT   LI             ++ A +E
Sbjct: 154 PTPVQKHAIPIIA-----SNRDL-MACAQTGSGKTAAFLIPILNRMIEEGPGDSLIATME 207

Query: 320 AGGQ-----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
              +     A+I+AP   LA Q +E  +K+   ++I   ++ G    A  R  L  ++ G
Sbjct: 208 TNRRKQFPVALILAPTRELASQIFEDARKFAYRSRIRPCVLYGG---ADMRAQLIEVSKG 264

Query: 375 QAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ----------------Q 410
             ++++ T     D I+  ++ L     +I+DE  R    G +                +
Sbjct: 265 -CNLLVATPGRLTDVIERGRIGLDHCRFLILDEADRMLDMGFEPQIRRIVEQDNLPPSGK 323

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           R  L   AT PH + M A       +  ++G +  +            + +   I+ ++E
Sbjct: 324 RQTLMFSATFPHEIQMLAKDFLSRYIFLAVGRVGSTS-----------ENITQSISWVEE 372

Query: 471 VIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRM 525
             +R  +V  LS           +E K+ ++         SL ++  S    +A IHG  
Sbjct: 373 DKKRDALVDLLSSSDPGVLTLVFVETKRGAD---------SLEDYLFSQKFQVASIHGDR 423

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +  D+E  +  F+NG   +L+AT V   G+D+ +   +I  +        +H++ GR GR
Sbjct: 424 TQDDRELALSCFRNGRTPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRI-GRTGR 482


>gi|119773585|ref|YP_926325.1| primosomal protein N' [Shewanella amazonensis SB2B]
 gi|119766085|gb|ABL98655.1| primosomal protein N' [Shewanella amazonensis SB2B]
          Length = 735

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 7/116 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   +  G QA+I+ P IG+  Q     I ++ +  ++ V +I
Sbjct: 227 LLEGITGSGKTEVYLSVLEKILSEGKQALILVPEIGLTPQT----IDRFRRRFKVEVAVI 282

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
             N+    R  A      G+A IIIGT +     + +  +I  I+DE+H    +Q+
Sbjct: 283 HSNLTDNQRLDAWRAGRSGEAAIIIGTRSALFTPMAFPGII--ILDEEHDSSFKQQ 336


>gi|324991749|gb|EGC23681.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK353]
          Length = 447

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 149/358 (41%), Gaps = 44/358 (12%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAV 318
           Q+ LR++ F   T  QE  I  +L       R L + +   GSGKT   L+ +  M    
Sbjct: 13  QEALRDLNFVEATPVQEKLIPVVLS-----GRDL-VGESKTGSGKTHTFLLPIFQMLDEE 66

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               QAVI AP   LA Q Y+  ++       +I V    G   +A +   LE     Q 
Sbjct: 67  ADTVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGKLE---SSQP 123

Query: 377 HIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           HI+IGT     D ++      +K    +VDE         L +   AT   +    A  +
Sbjct: 124 HIVIGTPGRIYDLVESGDLAIHKAKTFVVDE-----ADMTLDMGFLATVDKI----AGRL 174

Query: 432 PRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGK---- 483
           P+ L           K+  +P  +K    P+   I     I + IE   ++ ++G+    
Sbjct: 175 PKDLQFLVFSATIPQKL--QPFLKKYLSNPVIEQIKTKTVIADTIENW-LLSTKGRDKNA 231

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           + Y I   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN 
Sbjct: 232 QIYQISQLLQPYMAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|302391953|ref|YP_003827773.1| ATP-dependent DNA helicase, RecQ-like protein [Acetohalobium
           arabaticum DSM 5501]
 gi|302204030|gb|ADL12708.1| ATP-dependent DNA helicase, RecQ-like protein [Acetohalobium
           arabaticum DSM 5501]
          Length = 711

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 151/375 (40%), Gaps = 69/375 (18%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++IL+N  +   KS +   K+I+ ++   N  + IL    G GK++   I    AV   G
Sbjct: 6   KQILQN--YFGYKSFKPGQKEIIDNILAGNNTIGILP--TGGGKSICFQIP---AVCLSG 58

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII-IG 381
             V+ +P+  L +   + ++       I    I  ++ +   R  +E +   Q  ++ I 
Sbjct: 59  VTVVFSPLISLMKDQIDSLRA----VGIDATFINSSLSRKEIRNRIEGVKLDQYDLLYIA 114

Query: 382 THALFQDSIQYYKLI------LVIVDEQH---RFGVQQRLKLTQKATAPHVLLMTA---- 428
              L  +S +++ L+      L++VDE H   ++G   R         P  LL++     
Sbjct: 115 PERL--ESNKFFSLLKTIDISLIVVDEAHCISQWGHDFR---------PAYLLISNLLDK 163

Query: 429 ---TPIPRTLVLTSLGDI--DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
               PI      T+  D+  DI  I +       IK   I I   D      K++  E K
Sbjct: 164 LDDNPIVTAFTATATEDVRKDIGSILD-------IKESNIFITSFDRPNLNFKLIKGEDK 216

Query: 484 KAYWICPQIEEKKESN----------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           + +     IEE   +N           R  V+   S  +    ++   H  +S + ++  
Sbjct: 217 RDF-----IEEYVATNSGEAGIIYAATRKEVDNLYSFLQEEGFAVGKYHAGLSSVVRKKT 271

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            D F     ++++AT    +GID  +   +I  N     +   +Q  GR GR  E S C+
Sbjct: 272 QDDFLYDRIEVVVATNAFGMGIDKSNVRYVIHHNMPK-DIESYYQEAGRAGRDGEQSECV 330

Query: 594 LLYHPPLSKNSYTRL 608
           LL+ P     S TRL
Sbjct: 331 LLFSP-----SDTRL 340


>gi|258564346|ref|XP_002582918.1| eukaryotic initiation factor 4A-6 [Uncinocarpus reesii 1704]
 gi|237908425|gb|EEP82826.1| eukaryotic initiation factor 4A-6 [Uncinocarpus reesii 1704]
          Length = 398

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 126/301 (41%), Gaps = 62/301 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    V+      QA+I+AP   LAQQ  + +        I   
Sbjct: 66  IAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECH 125

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        KAL         +++GT     D IQ   L        +L   DE   
Sbjct: 126 ACIGGTSVRDDMKAL----SDGPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLS 181

Query: 406 FGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G  +++    +L  ++T   V+L++AT +P+          D+  +T K   R P++ +
Sbjct: 182 RGFTEQIYDIFQLLPQST--QVVLLSAT-MPQ----------DVLDVTTKFM-RDPVRIL 227

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------R 506
           +          ++ ++ L EG K ++I  + EE K      + E               +
Sbjct: 228 V----------KKAELTL-EGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 276

Query: 507 FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L +   +   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++
Sbjct: 277 VDWLTDKLIARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 336

Query: 564 I 564
           I
Sbjct: 337 I 337


>gi|157111113|ref|XP_001651396.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108878542|gb|EAT42767.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 603

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 151/383 (39%), Gaps = 72/383 (18%)

Query: 257 VEGKIAQKILRNIP---FSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           + GK++   L+ I    F+  T+ Q  AI  +L+      R L I     GSGKTL  LI
Sbjct: 113 LRGKVSDNTLKAIAEMGFTKMTEIQAKAIPPLLE-----GRDL-IGSAKTGSGKTLAFLI 166

Query: 313 AMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
            +   +         G   +I++P   LA Q +  +K+   +      ++ G    A R 
Sbjct: 167 PVVELINKLQFKPRNGTGVIIISPTRELAMQIFGVLKELMAHHHHTYGLLMGG---ASRH 223

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHRF---GVQQRLK--L 414
              E++  G  +I++ T     D ++      +  L  +++DE  R    G ++ +K  +
Sbjct: 224 TENEKLGKG-LNIVVATPGRLLDHLKGTPNFLFKNLQCLVIDECDRILEIGFEEDMKQII 282

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
           +        +L +AT   RT  L                G+  +K+  I +   D   E 
Sbjct: 283 SILPKKRQTMLFSATQTSRTEEL----------------GKLALKSEPIYVGVDDHKTEA 326

Query: 475 LKVVLSEGKKAYWICPQIEEK---------KESNFRSVVERFNSL------HEHFTS--- 516
               L +G   Y +CP   EK         K++  + V+  F+S       HE F     
Sbjct: 327 TVTGLEQG---YIVCPS--EKRLLVLFTFLKKNRKKKVMVFFSSCLSVKYHHELFNYIDL 381

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +  IHG+     + SV   F N    +L+ T V   G+D+     I+  +  +     +
Sbjct: 382 PVNSIHGKQKQAKRTSVFFQFCNAESGILLCTDVAARGLDIPAVDWIVQYDPPNDTKEYI 441

Query: 577 HQLRGRVGRGEEISSCILLYHPP 599
           H++ GR  RGE I    LL   P
Sbjct: 442 HRV-GRTARGENICGHALLLLRP 463


>gi|72074252|ref|XP_780035.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 1
           [Strongylocentrotus purpuratus]
 gi|115968722|ref|XP_001179006.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 2
           [Strongylocentrotus purpuratus]
          Length = 883

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 130/328 (39%), Gaps = 54/328 (16%)

Query: 302 VGSGKTLVALIAMAAAVE---------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            GSGKTL  L+     +           G  A+++AP   LAQQ  +    + ++++I  
Sbjct: 155 TGSGKTLSYLLPSIVHINHQPFLERGVDGPIALVLAPTRELAQQVQQVAFAFGRSSKIKS 214

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G  P+  + + LER       I I T     D ++  K  L     V++DE  R  
Sbjct: 215 TCVYGGAPKGQQIRDLER----GVEICIATPGRLIDFLENNKTNLRRCTYVVLDEADRML 270

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
              F  Q R  + Q           AT P  +   A    R  ++ ++G + +S    I 
Sbjct: 271 DMGFEPQIRKIMEQIRPDRQVQMWSATWPKDVRNLAEDFIRDYIMVNIGSLTLSANHNIL 330

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE-GKKAYWICPQIEEKKESNFRSVVERFN 508
           +       I  V     +  ++I+ L+ ++ E   K    C   E K+ ++   +V R  
Sbjct: 331 Q-------IIDVCEDSEKDKKLIQLLEEIMQEKDNKTLVFC---ETKRRTD--DLVRRM- 377

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                       +HG  S  +++ V+  F++G   +L+AT V   G+DV D   +I  + 
Sbjct: 378 ---RRDGWPAMCLHGDKSQPERDWVLSEFRDGRAPILVATDVASRGLDVTDIKFVINYDY 434

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY 596
            +     +H++ GR  R     +    +
Sbjct: 435 PNSSEDYVHRI-GRTARSTRTGTAYTFF 461


>gi|229825212|ref|ZP_04451281.1| hypothetical protein GCWU000182_00564 [Abiotrophia defectiva ATCC
           49176]
 gi|229790584|gb|EEP26698.1| hypothetical protein GCWU000182_00564 [Abiotrophia defectiva ATCC
           49176]
          Length = 512

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 15/129 (11%)

Query: 478 VLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKE 531
           V++  KKA +I   IEE    +   + +  +  + L+E        +   H  M++ D++
Sbjct: 30  VVNTKKKADFITNYIEEHPADSGIIYCATRKNVDMLYELLVDKGIRVTGYHAGMNNDDRK 89

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGE 587
              + F    C+++IAT    +GID  D   +I     H+ + Q     +Q  GR GR  
Sbjct: 90  KSQEDFIYDRCQIIIATNAFGMGIDKSDVRFVI-----HYNMPQSMENYYQEAGRAGRDG 144

Query: 588 EISSCILLY 596
           E S CILL+
Sbjct: 145 EPSQCILLF 153


>gi|212638043|ref|YP_002314563.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
 gi|212559523|gb|ACJ32578.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
          Length = 471

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 100/426 (23%), Positives = 181/426 (42%), Gaps = 64/426 (15%)

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKY 344
           +S +NR + I Q   G+GKT    I +   ++      QA+++AP   LA Q  E + K 
Sbjct: 38  LSLQNRDV-IGQAQTGTGKTAAFGIPLIEKIDMNNDAVQAIVVAPTRELAIQVSEELYKI 96

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLI 396
               ++ V  I G      + +AL++      HII+GT     D IQ         + ++
Sbjct: 97  GSTKRVRVLPIYGGQDIERQIRALKK----HPHIIVGTPGRILDHIQRRTLRLQHVHTVV 152

Query: 397 LVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIP-RTLVLTSLGDIDISKITEKP 452
           L   DE    G  + ++  L+   T    LL +AT P P R +    + + ++ ++    
Sbjct: 153 LDEADEMLNMGFVEDIEAILSHVPTERQTLLFSATMPEPIRRIAERFMNNPELVRVK--- 209

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---NFRSVVERFNS 509
                 K + +P       IE+  + + E KK   +   ++ +       F     R + 
Sbjct: 210 -----AKEMTVP------NIEQYYIEIQEKKKFDTLTRLLDIQSPELAIVFGRTKRRVDE 258

Query: 510 LHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII--- 563
           L E       +   IHG +S   + SV+  FK G+  +L+AT V   G+D+   + +   
Sbjct: 259 LAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIDILVATDVAARGLDISGVTHVYNF 318

Query: 564 -IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-------LSKNSYTRLSVLK-NT 614
            I ++ E +    +H++ GR GR  +    I    P        + K +  ++  +K  T
Sbjct: 319 DIPQDPESY----VHRI-GRTGRAGKTGMAITFVTPREIGQLHHIEKTTKRKMERMKPPT 373

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL---HDSLLEIARKDAKHILTQDP 671
            D  L  ++  +   E  +  I+ + +  +  A  EL   HDS+  +A      +LT++P
Sbjct: 374 LDEALEGQQ--RAAIEKLLATIEHNNLAFYKRAAEELLEEHDSVSLVA--ACIKMLTKEP 429

Query: 672 DLTSVR 677
           D+T V+
Sbjct: 430 DMTPVQ 435


>gi|255950466|ref|XP_002566000.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593017|emb|CAP99391.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 552

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 71/343 (20%), Positives = 143/343 (41%), Gaps = 51/343 (14%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +     + A        G   +++AP   LA Q    I K+ ++++I 
Sbjct: 170 AETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIR 229

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR- 405
              + G +P+  + + L R       + I T     D ++       ++  +++DE  R 
Sbjct: 230 NTCVYGGVPKGPQIRDLSR----GVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRM 285

Query: 406 ----FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KI 448
               F  Q R  ++Q           AT P  +   A+      +  ++G  D+S   +I
Sbjct: 286 LDMGFEPQIRKIISQIRPDRQTCMWSATWPKDVRQLASDFLSDYIQVNVGSTDLSANHRI 345

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           T+       I  V+    + D++I+ L+ ++ +      I    +   +      + RF 
Sbjct: 346 TQ-------IVEVVADFEKRDKMIKHLEKIMEDRSNKCIIFTGTKRVADD-----ITRF- 392

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D + ++  + 
Sbjct: 393 -LRQDGWPALSI-HGDKQQNERDWVLNEFKQGKSPIMVATDVASRGIDVRDITHVLNYDY 450

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            +     +H++ GR  R     + I  +    SK +   +++L
Sbjct: 451 PNNSEDYVHRI-GRTARAGAKGTAITFFTTDNSKQARDLITIL 492


>gi|170088270|ref|XP_001875358.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650558|gb|EDR14799.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 691

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 137/348 (39%), Gaps = 72/348 (20%)

Query: 300 GDVGSGKTLVALIAMAAAVEA-----------GGQAVIMAPIGILAQQHYEFIKKYTQNT 348
            + GSGKT   +I M + +             G  A+IMAP   LAQQ     +K+    
Sbjct: 308 AETGSGKTAAFVIPMLSFISGLPPFTDDIRHLGPYALIMAPTRELAQQIESEARKFASPL 367

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQ 403
                 I G +    ++  L       A III T    +D I+ + L+L     V++DE 
Sbjct: 368 GFKCVSIVGGVSVEEQQFNLRE----GAEIIIATPGRLKDVIERHVLVLSQCRYVVMDEA 423

Query: 404 HR---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD-IDISKITEKPAGRKPIK 459
            R    G +  L            ++ A P   T+    LG+ +D+   T    GR  + 
Sbjct: 424 DRMVHLGFEADL----------TFILDALP-SETMQGEDLGEQMDVDGETMIKKGRTRVT 472

Query: 460 TVIIPINRIDEVIERLK---------VVLSEGKKAYWICPQIEE---KKESNFRSVVERF 507
           T+      +   +ERL          + + E  +A     Q  E     E   + ++E  
Sbjct: 473 TLFSAT--MPAAVERLARKYLKKPAVITIGEAGRAVDTVEQRVEFVSGDEKKKQKLLEIL 530

Query: 508 NS----------LHEHFTSSI------------AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           NS          +++  T+ +            A +H   +   +E+ + S +NG   +L
Sbjct: 531 NSGQYASPIIVFVNQKKTADMVAKDLSRAGWNAATLHSGKNQEQREASLQSLRNGESDVL 590

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +AT +   GIDV D S++I     +   A +H++ GR GR  ++ + I
Sbjct: 591 VATDLAGRGIDVQDVSLVINFQMANTIEAYVHRI-GRTGRAGKLGTAI 637


>gi|170102104|ref|XP_001882268.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164642640|gb|EDR06895.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 570

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           H  ++   KES+  +++NG+ +++ AT    +GID  D   +I  +     L   +Q  G
Sbjct: 299 HADVAAAQKESLHKAWRNGSVRVVCATIAFGLGIDKGDVRFVIHHSKS---LEGFYQESG 355

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
           R GR  + S CIL Y P   ++    +S++    DG
Sbjct: 356 RAGRDGKDSDCILYYRP---QDGTNLVSMVATERDG 388


>gi|158300606|ref|XP_320481.4| AGAP012045-PA [Anopheles gambiae str. PEST]
 gi|157013241|gb|EAA00456.4| AGAP012045-PA [Anopheles gambiae str. PEST]
          Length = 910

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG  S  +++ V+  F++G   +L+AT V   G+DV D   +I  +  +     +H++ 
Sbjct: 505 IHGDKSQTERDYVLQDFRHGKSTILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRI- 563

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           GR GR  +  +    + P   + +   LSVL+
Sbjct: 564 GRTGRCSQYGTAYTFFTPNNGRQARELLSVLE 595


>gi|149193923|ref|ZP_01871021.1| primosome assembly protein PriA [Caminibacter mediatlanticus TB-2]
 gi|149135876|gb|EDM24354.1| primosome assembly protein PriA [Caminibacter mediatlanticus TB-2]
          Length = 601

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 152/395 (38%), Gaps = 96/395 (24%)

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           K   + IL GD GSGKT + +  +   +  G  A+ + P   +     + +KKY  ++  
Sbjct: 122 KKENISILFGDTGSGKTEIYVKLIEKYINKGKSAIFLLPEIAITSSIEKRLKKYFGDS-- 179

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH----- 404
            + I    + +  R + L+ I+ G+  +++G   ALF   +    L ++IVDE H     
Sbjct: 180 -LAIWHSKITKKKREEILQEISEGKIKVVVGPRSALF---LPLRNLGVIIVDEAHDDSYK 235

Query: 405 -----RFGVQQRLKLTQKATAPHVLLMTATPI-------------------PRTLVLT-S 439
                ++  +       K     V+L +ATP+                    +T   T S
Sbjct: 236 SESIPKYNAKDLAIFMGKTLNAKVVLGSATPLVSDLYKFPYFRLKGTFHNTKKTRYFTES 295

Query: 440 LGDIDISKITEKPAGRKPIKTVIIP---------INRIDEVI--ERLKVVLSEGK----- 483
             +  I KI EK    K +  + +P              E I  +   V +S  K     
Sbjct: 296 FNEFIIKKIDEKLKQNKQV-IIFLPTRAHFKYMICKNCGEAIKCKYCDVAMSLHKDKLAL 354

Query: 484 KAYW---------ICPQ------IEEKKESNFRSVVERF-----NSLHEHFTSSIAIIHG 523
           K ++         +CP       I E+K ++   +VE       N+  E F   I     
Sbjct: 355 KCHYCNFTQKIPNLCPNCGSEEFINERKGTS--ELVEELREIFKNTKIEKFDRDIVTSKS 412

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII-------ENAEH------ 570
           R   IDK  ++ SF N    +L+ T ++  G D  D ++ I+        +A++      
Sbjct: 413 R---IDK--LLKSFANKEIDILVGTQMLSKGHDFPDVALSIVLDIDFLLNSADYKARERA 467

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           F LA+  Q+ GR GR E+    I   +P      Y
Sbjct: 468 FSLAK--QVEGRAGRKEDGEVIIQTLNPEFFDRDY 500


>gi|51245828|ref|YP_065712.1| ATP-dependent RNA helicase DbpA [Desulfotalea psychrophila LSv54]
 gi|50876865|emb|CAG36705.1| probable ATP-independent RNA helicase (DbpA) [Desulfotalea
           psychrophila LSv54]
          Length = 469

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 140/326 (42%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQI 350
           + Q   GSGKT    I +   ++      Q ++M P   LA+Q       I ++  N +I
Sbjct: 43  LAQAKTGSGKTAAFGIGLLHNLDVSLFRVQTLVMCPTRELAEQVAGELRRIARFKHNIKI 102

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHR 405
               + G MP   +  +LE     QAHI++GT       L ++S+    +  +++DE  R
Sbjct: 103 TT--LCGGMPIKPQLASLEH----QAHIVVGTPGRIEQHLKRESLNLDHVTTLVLDEADR 156

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVI 462
                 L +    T   ++    + +PR   TL+ ++    +I +++E+   +   + VI
Sbjct: 157 M-----LDIGFADTLDAII----SYLPRRRQTLLFSATFPDEILRLSEQF--QYKAQRVI 205

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----------ESNFRSVVERFNSLHE 512
           + +   +  I++        KKA  +   +   K          ++N R + E   +L  
Sbjct: 206 VDVEHEENSIQQEFFECKWDKKAAIVSRILATHKPESTLIFCNTKANCRDIAE---ALEA 262

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              S++AI HG +   ++  V+  F NG+  +++AT V   G+D+   S +I  +     
Sbjct: 263 KGFSALAI-HGDLDQRERTEVLVRFSNGSSPIMVATDVAARGLDINGLSAVINVDLPFES 321

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
              +H++ GR GR  +      L  P
Sbjct: 322 EVYIHRI-GRTGRAGKEGLAFSLMEP 346


>gi|328945053|gb|EGG39209.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1087]
          Length = 447

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 149/358 (41%), Gaps = 44/358 (12%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAV 318
           Q+ LR++ F   T  QE  I  +L       R L + +   GSGKT   L+ +  M    
Sbjct: 13  QEALRDLNFVEATPVQEKLIPVVLS-----GRDL-VGESKTGSGKTHTFLLPIFQMLDEE 66

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               QAVI AP   LA Q Y+  ++       +I V    G   +A +   LE     Q 
Sbjct: 67  ADSVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGKLE---SSQP 123

Query: 377 HIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           HI+IGT     D ++      +K    +VDE         L +   AT   +    A  +
Sbjct: 124 HIVIGTPGRIYDLVESGDLAIHKAKTFVVDE-----ADMTLDMGFLATVDKI----AGRL 174

Query: 432 PRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGK---- 483
           P+ L           K+  +P  +K    P+   I     I + IE   ++ ++G+    
Sbjct: 175 PKDLQFLVFSATIPQKL--QPFLKKYLSNPVIEQIKTKTVIADTIENW-LLSTKGRDKNA 231

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           + Y I   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN 
Sbjct: 232 QIYQISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|257871145|ref|ZP_05650798.1| primosomal protein N [Enterococcus gallinarum EG2]
 gi|257805309|gb|EEV34131.1| primosomal protein N [Enterococcus gallinarum EG2]
          Length = 799

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 5/137 (3%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            + Q  A+  IL    ++     +L+G  GSGKT V L  +A  +E    A+++ P   L
Sbjct: 263 NEEQTDAVSKILSAAKRQEAQTFLLEGITGSGKTEVYLQTIAELLEQKKTAIMLVPEIAL 322

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             Q  E  K    N    V ++   + Q  +     +I  G+A +++G  +     ++  
Sbjct: 323 TPQMVERFKSRLGNA---VAVLHSGLSQGEKYDEWRKIERGEAQVVVGARSAIFAPLK-- 377

Query: 394 KLILVIVDEQHRFGVQQ 410
            + ++IVDE+H    +Q
Sbjct: 378 NIGVIIVDEEHEASYKQ 394


>gi|146165477|ref|XP_001015163.2| ATP-dependent DNA helicase, RecQ family protein [Tetrahymena
           thermophila]
 gi|146145471|gb|EAR94918.2| ATP-dependent DNA helicase, RecQ family protein [Tetrahymena
           thermophila SB210]
          Length = 1198

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L+  +  + A  HG M+D +KE V   + +   +++ AT    +GID  D   +I     
Sbjct: 646 LNIQYKINAAYYHGSMNDKEKEQVQQLWMSNDIQVICATIAFGMGIDKHDVRFVI----- 700

Query: 570 HFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           H+  ++     +Q  GR GR  +IS C  +Y+ P  KNS
Sbjct: 701 HYTFSKSIENYYQEAGRAGRDGKISHC-RIYYSPKDKNS 738


>gi|91092124|ref|XP_972501.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68
           [Tribolium castaneum]
          Length = 540

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 137/345 (39%), Gaps = 57/345 (16%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +    + ++++I   
Sbjct: 137 TGSGKTLSYILPAIVHINHQPRLLRGDGPIALVLAPTRELAQQIQQVATDFGRSSKIRNT 196

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G  P+  +   L         I+I T     D ++  +  L     +++DE  R   
Sbjct: 197 CVFGGAPKGPQANDL----MDGVEIVIATPGRLIDFLESNRTNLRRCTYLVLDEADRMLD 252

Query: 407 -GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G + +++            L   AT P  +   A    +  +  ++G + +S      A
Sbjct: 253 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVQALAAEFLKDYIQINVGSLQLS------A 306

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               ++  II + +  E   +L  +L E   +K       IE KK       V+      
Sbjct: 307 NHNILQ--IIDVCQEYEKETKLSTLLKEIMAEKENKTIIFIETKKR------VDEITRKM 358

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IEN 567
           +        IHG  S  +++ V+  F+ G   +L+AT V   G+DV D   +I      N
Sbjct: 359 KRDGWPAVCIHGDKSQQERDWVLQDFRTGKAPILVATDVAARGLDVEDVKFVINFDYPSN 418

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +E +    +H++ GR GR +   +    + P  +  +   +SVLK
Sbjct: 419 SEDY----VHRI-GRTGRSQRTGTAYTFFTPANANKAADLVSVLK 458


>gi|15614947|ref|NP_243250.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
 gi|10175004|dbj|BAB06103.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
          Length = 539

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 131/320 (40%), Gaps = 35/320 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           I Q   G+GKT    I +   V  G   QA+I+ P   LA Q    I+K +++ +I    
Sbjct: 47  IGQAQTGTGKTAAFGIPVVEKVSTGRHVQALILTPTRELAIQVSGEIQKLSKHKKIRTLP 106

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--- 406
           I G     H+ KAL++       ++IGT     D ++   LIL     VI+DE       
Sbjct: 107 IYGGQSIVHQIKALKQ----GVQVVIGTPGRIIDHLRRKTLILDHVNTVILDEADEMLDM 162

Query: 407 GVQQRLK--LTQKATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTV- 461
           G    ++  L Q       LL +AT  P  + L    + D     I  +      I    
Sbjct: 163 GFIDDIESILRQVKNERQTLLFSATMPPAIKKLSRKYMNDPQTVSINRREVTAPSIDQFY 222

Query: 462 --IIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             ++  N++D +    +++ SE        C           + V E   +L      + 
Sbjct: 223 YKVLERNKLDSL---CRIIDSEQIDLGILFC--------RTKKGVAELTEALQARGYIAD 271

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG ++   +++VM  F++ + + LIAT V   GIDV + S +I  +      + +H+
Sbjct: 272 GL-HGDLTQSQRDAVMRKFRDSSIEFLIATDVAARGIDVGNVSHVINYDIPQDPESYVHR 330

Query: 579 LRGRVGRGEEISSCILLYHP 598
           + GR GR       + L  P
Sbjct: 331 I-GRTGRAGRKGLALTLVTP 349


>gi|313238451|emb|CBY13525.1| unnamed protein product [Oikopleura dioica]
          Length = 590

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 15/152 (9%)

Query: 297 ILQGDVGSGKTL--VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           +L  D+G GKT+   A I+    +E     +I  P  ++A    E +KK+  N +    +
Sbjct: 105 LLSDDMGLGKTIQVAAFISALVDMEEATHFLIFVPNSLIANWESE-LKKWAPNLEQF--L 161

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQH-- 404
            TG + +  R + L       + ++I ++ L  ++I  +            +I+DE H  
Sbjct: 162 FTGELQRKKREQNLREAKKSNSAVVIASYGLCNNNIDVFNSYGSKDWTWDYMILDEAHTI 221

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           +    +  K      + H LLMT TP+   LV
Sbjct: 222 KNSSTKTAKTIVSINSTHRLLMTGTPVMNKLV 253


>gi|251779418|ref|ZP_04822338.1| ATP-dependent RNA helicase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083733|gb|EES49623.1| ATP-dependent RNA helicase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 382

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 136/310 (43%), Gaps = 29/310 (9%)

Query: 303 GSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GSGKTL  ++ +   +       QA+I+AP   L  Q    IK  + N+ I V+ + G +
Sbjct: 50  GSGKTLAYVLPIFERINTEKKDIQAIILAPTHELVMQIEAQIKLLSDNSGINVKSL-GII 108

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRFGVQQRLKL 414
              +    ++++   + HII+G+     D I+  K+       +++DE       +R ++
Sbjct: 109 GDVNINNQIKKLKEVKPHIIVGSTGRVLDLIRKKKITAHTIKTIVIDEVDNLLDPKRAQI 168

Query: 415 TQ---KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINR 467
            +   K T     LM  +      ++ SL ++    +  K  G+  I      V +  +R
Sbjct: 169 VKDIIKTTMRDRQLMAFSASITPEIVDSLKELMKDPLIVKSQGKSSINPNISHVYVKCDR 228

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
            D+     K++ +E  K   I   + + K+    S+      L+ H     A+  G +S 
Sbjct: 229 RDKFEVLRKIIAAEDPKRALIF--VNDNKDIELTSL-----KLNYHNRECFAM-SGSISK 280

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE-HFGLAQLHQLRGRVGRG 586
            ++++ +DSFK G  K+L+++ V   G+D+ D + +   N +    L +     GR  RG
Sbjct: 281 EERKNAIDSFKTGKIKILVSSDVSARGLDITDITHVF--NLDLPLKLDEYLHRSGRTARG 338

Query: 587 EE--ISSCIL 594
                S CI+
Sbjct: 339 NAKGTSICIV 348


>gi|149065925|gb|EDM15798.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_b [Rattus
           norvegicus]
          Length = 523

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 67/315 (21%), Positives = 124/315 (39%), Gaps = 49/315 (15%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +    Y + +++    I G  P+  + + LER       I I T 
Sbjct: 39  CLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 94

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF---GVQ------------QRLKLTQKATAPHV 423
               D ++  K  L     +++DE  R    G +             R  L   AT P  
Sbjct: 95  GRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 154

Query: 424 LLMTATPIPRTLVLTSLGDIDIS---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           +   A    R     ++G++++S    I +       I  V +   +  ++I+ ++ +++
Sbjct: 155 VRQLAEDFLRDYTQINVGNLELSANHNILQ-------IVDVCMESEKDHKLIQLMEEIMA 207

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
           E           +E K   F     R + L             IHG  S  +++ V++ F
Sbjct: 208 E-----------KENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEF 256

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R     +    + 
Sbjct: 257 RSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFT 315

Query: 598 PPLSKNSYTRLSVLK 612
           P   K +   + VL+
Sbjct: 316 PGNLKQARELIKVLE 330


>gi|58337596|ref|YP_194181.1| primosomal replication factor [Lactobacillus acidophilus NCFM]
 gi|227904236|ref|ZP_04022041.1| primosomal replication factor [Lactobacillus acidophilus ATCC 4796]
 gi|58254913|gb|AAV43150.1| primosomal replication factor [Lactobacillus acidophilus NCFM]
 gi|227867884|gb|EEJ75305.1| primosomal replication factor [Lactobacillus acidophilus ATCC 4796]
          Length = 799

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 13/148 (8%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           ++ P      Q+ A+  I   + ++     +L+G  GSGKT V L A++ A+E G  A++
Sbjct: 257 KSAPVKLNDEQQFALNQITAAIDKRKAETFLLEGITGSGKTEVYLHAISKALEQGRNALM 316

Query: 327 MAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-A 384
           + P I +  Q   +   ++ Q     V ++   + +  +     RI  G+  +++G   A
Sbjct: 317 LVPEISLTPQMVRQVKSRFGQ----AVAVLHSALSEGEKYDEWRRIRRGETRVVVGARSA 372

Query: 385 LFQ--DSIQYYKLILVIVDEQHRFGVQQ 410
           +F   D+I      L+++DE+H    +Q
Sbjct: 373 VFAPLDNIG-----LIVIDEEHESSYKQ 395


>gi|47097038|ref|ZP_00234610.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254828606|ref|ZP_05233293.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N3-165]
 gi|254898593|ref|ZP_05258517.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J0161]
 gi|254911917|ref|ZP_05261929.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J2818]
 gi|254936243|ref|ZP_05267940.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes F6900]
 gi|47014573|gb|EAL05534.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601004|gb|EEW14329.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N3-165]
 gi|258608833|gb|EEW21441.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes F6900]
 gi|293589878|gb|EFF98212.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J2818]
          Length = 470

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 123/310 (39%), Gaps = 31/310 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKT    I +A  VE      QA+I+ P   LA Q         +  ++   
Sbjct: 40  VAKSQTGSGKTAAFAIPIAEQVEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAA 99

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
            I G  P A ++  L +    + HI++GT     D I+           L+L  VDE   
Sbjct: 100 AIYGQSPFAKQKLELSQ----KNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLS 155

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G   +++  L++       L  +AT       L      D   I        PI  V I
Sbjct: 156 MGFIDQVEDILSRLPKQRQNLFFSATMPEEMQGLIKRYQDDPMVIEMASEKTNPILHVEI 215

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             +  ++ ++   V+++E   +  I           F +   + + L +      + IHG
Sbjct: 216 QTDNKEKTLK--DVLITENPDSAII-----------FCNTKNQVDELTDLLDVKASKIHG 262

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +   D+   MD FK+G  + LIAT V   GIDV + S++I  +        +H++ GR 
Sbjct: 263 GLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRI-GRT 321

Query: 584 GRGEEISSCI 593
           GR  +    I
Sbjct: 322 GRAGKSGKAI 331


>gi|197251196|ref|YP_002146376.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197214899|gb|ACH52296.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 142/323 (43%), Gaps = 50/323 (15%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF 406
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGAQRDSLQH----APHIIVATPGRLLDHLQKETVSLDALHILVMDEADRM 158

Query: 407 ---GVQQRL-KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV- 461
              G    + ++ + A A    L+ +   P  +   S       ++ ++P  R  I TV 
Sbjct: 159 LDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAIS------GRVQQQPM-RIEIDTVD 211

Query: 462 IIPI-------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            +P            E I  L+ +LS+ + A  +   +    + + ++V +  N++ +  
Sbjct: 212 ALPAIEQQFFETSAHEKISLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALNAVGQ-- 266

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E     
Sbjct: 267 -SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELVVNYELAWDP 322

Query: 575 QLHQLR-GRVGR----GEEISSC 592
           ++H  R GR  R    G  IS C
Sbjct: 323 EVHVHRIGRTARAGSSGLAISFC 345


>gi|109900487|ref|YP_663742.1| primosomal protein N' [Pseudoalteromonas atlantica T6c]
 gi|109702768|gb|ABG42688.1| primosomal protein N' [Pseudoalteromonas atlantica T6c]
          Length = 725

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 11/168 (6%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P   Q  AI  I   + +    L  ++G  GSGKT V L A+ + +  G Q +I+ P IG
Sbjct: 195 PNVEQAIAISQITAKIGEYASFL--IEGVTGSGKTEVYLQAIESVLTQGKQVLILVPEIG 252

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q    F K++     ++V I+  N+    R    ++   GQ  IIIGT +     ++
Sbjct: 253 LTPQTVERFAKRFN----VLVGILHSNLTDNERLLVWQQSQAGQLPIIIGTRSAIFTPMK 308

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              ++  IVDE+H    +Q+  L   A    V+      IP  L+L S
Sbjct: 309 NPGML--IVDEEHDSSYKQQDGLRYHARDLAVMRAAQEKIP--LILGS 352


>gi|253744853|gb|EET00992.1| Hypothetical protein GL50581_1748 [Giardia intestinalis ATCC 50581]
          Length = 476

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 22/125 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +PTK+Q +AIK IL D ++      +L+   G+GKT+  L  + + V       QAVI+A
Sbjct: 46  TPTKTQVAAIKPILCDHNRSG----LLEAPTGTGKTVSFLTVVMSHVVPDKHLPQAVIIA 101

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ----AHIIIGT-H 383
           P  +L +Q Y   ++ T+ + I + +            A + +  G+    AHI+IGT H
Sbjct: 102 PTKLLCRQIYNVAEQITKGSNIHISLCL----------AKDELNEGELRPTAHIVIGTIH 151

Query: 384 ALFQD 388
           +L  +
Sbjct: 152 SLLNN 156


>gi|227886220|ref|ZP_04004025.1| ATP-dependent RNA helicase DbpA [Escherichia coli 83972]
 gi|227836424|gb|EEJ46890.1| ATP-dependent RNA helicase DbpA [Escherichia coli 83972]
 gi|307553405|gb|ADN46180.1| ATP-independent RNA helicase DbpA [Escherichia coli ABU 83972]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 127/326 (38%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                  K  I  + R+        + L +       C       + + +SV +  N + 
Sbjct: 219 QFYETSSKGKIPLLQRL--------LSLHQPSSCVVFC-----NTKKDCQSVCDALNEVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S    +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 QSALS----LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELVVNFELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|200389990|ref|ZP_03216601.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199602435|gb|EDZ00981.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 136/326 (41%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI------ 399
              + G  P   +R +L+       HII+ T     D +Q   +      ILV+      
Sbjct: 105 T--LCGGQPFGAQRDSLQH----APHIIVATPGRLLDHLQKETVSLDALHILVMDEADRM 158

Query: 400 --------VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                   +DE  RF    R  L   AT P  +   +  + +  +      I+I  +   
Sbjct: 159 LDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPI-----RIEIDTVDAL 213

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           PA  +             E I  L+ +LS+ + A  +   +    + +  +V +  N++ 
Sbjct: 214 PAIEQQFFE-----TSAHEKISLLQTLLSQHQPASCV---VFCNTKKDCEAVCDALNAVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 Q---SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELVVNYELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFC 345


>gi|47459115|ref|YP_015977.1| DEAD-box ATP-dependent RNA helicase [Mycoplasma mobile 163K]
 gi|47458444|gb|AAT27766.1| DEAD-box ATP-dependent RNA helicase [Mycoplasma mobile 163K]
          Length = 557

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 159/369 (43%), Gaps = 52/369 (14%)

Query: 255 INVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQ-GDVGSGKTLVALI 312
           ++++ KI    L+ I F +PT+ QE  I       S  N+   IL     G+GKT    +
Sbjct: 6   LDIDDKIINN-LKKIGFEAPTQIQELVI-------STANKNQNILGCAQTGTGKTAAFGV 57

Query: 313 AMAAA--------VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           ++            ++    +I+ P   L+ Q  E IK ++ N  I    I G M     
Sbjct: 58  SIINKILKNKKNNAKSSLTTLILVPTRELSVQVNENIKLFSSNLPITSLAIYGGM---RN 114

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRL 412
           R++   I      II+ T     D I+  KL L     V++DE            V++ L
Sbjct: 115 RESHFSIFKRGLDIIVATPGRLLDYIKSGKLSLSQVDTVVLDEADLMVDMGFIDDVKEIL 174

Query: 413 KLTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTV--IIPINR 467
           K T++     V+L +AT +P+    LV   +G  ++ + TE  A  KP++ +  +     
Sbjct: 175 KRTKEEK--QVMLFSAT-MPKAIMNLVEDFMGKFELIQ-TESFA--KPLQNIEHLAYFYT 228

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             + +E L+ +L E +K Y     ++ K+++      +   +L       I  +HG  + 
Sbjct: 229 SSKPVELLQQMLKE-EKIYSAIVFVKTKRDA------DNVENLLSKMKLKIDSLHGDKTQ 281

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +  ++ SFK G  ++L+AT V   GID+ D S +   N         H++ GR GR  
Sbjct: 282 ASRSRILRSFKEGKIQILVATDVASRGIDIDDISHVFNLNIPEDPEIYTHRV-GRTGRAS 340

Query: 588 EISSCILLY 596
           ++   I  +
Sbjct: 341 KVGKAISFF 349


>gi|315644143|ref|ZP_07897313.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315280518|gb|EFU43807.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 481

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 131/317 (41%), Gaps = 28/317 (8%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    I +   VE      QA+I+ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTAAYGIPLCEQVEWNENKPQALILTPTRELALQVNEDITNIGRFKRIKAT 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G  P   ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 PLYGRHPFHMQKAELKQ----RTHIVVGTPGRVLDHIERGSLSLDRISHLVIDEADEMLN 160

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI-- 462
              ++Q   + Q      V ++ +   P  +   +   ++  +  E  A      T+   
Sbjct: 161 MGFIEQVQSIIQALPRNRVTMLFSATFPEDVAKLAHKYMNHPEQIEIKASGLTTATIDHA 220

Query: 463 -IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            + +   D++     ++++    +  +  + +E  ++ FR++ +               I
Sbjct: 221 QVQVKEADKLAVLQNLLITTNPDSCIVFCRTQEHVDTLFRALAD--------LGYPCDRI 272

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG M   ++  VM +F+ G  + LIAT V   GID+ + + +I  +      + +H+  G
Sbjct: 273 HGGMEQEERFEVMHAFRRGQFRYLIATDVAARGIDISNITHVINYDIPLEKESYVHRT-G 331

Query: 582 RVGRGEEISSCILLYHP 598
           R GR  +  S I L  P
Sbjct: 332 RTGRAGQTGSAITLVTP 348


>gi|331646674|ref|ZP_08347777.1| ATP-independent RNA helicase DbpA [Escherichia coli M605]
 gi|330911207|gb|EGH39717.1| ATP-dependent RNA helicase DbpA [Escherichia coli AA86]
 gi|331045426|gb|EGI17553.1| ATP-independent RNA helicase DbpA [Escherichia coli M605]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 127/326 (38%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                  K  I  + R+        + L +       C       + + +SV +  N + 
Sbjct: 219 QFYETSSKGKIPLLQRL--------LSLHQPSSCVVFC-----NTKKDCQSVCDALNEVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S    +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 QSALS----LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELVVNFELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|302533878|ref|ZP_07286220.1| DEAD-box RNA helicase [Streptomyces sp. C]
 gi|302442773|gb|EFL14589.1| DEAD-box RNA helicase [Streptomyces sp. C]
          Length = 465

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 126/318 (39%), Gaps = 32/318 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A      A+++ P   LAQQ  + +  Y  +  + +
Sbjct: 99  RGRTGSGKTLAFGLALLARTAGRRAQPTAPLAMVLVPTRELAQQVTDSLSPYATSVNLRI 158

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRFG 407
             + G M    +  AL R     A +++ T    +D I        ++ + ++DE     
Sbjct: 159 ATVVGGMSINRQAGALRR----GAEVLVATPGRLKDLIDRGDADLSQVSITVLDEAD--- 211

Query: 408 VQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                ++T     P V  LL    P  +T++ ++  D +I K+  K     P+   + P 
Sbjct: 212 -----QMTDMGFMPQVTALLKQVAPEGQTMLFSATLDKNIDKLV-KMFLDDPVAFSVDPS 265

Query: 466 NRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAI 520
                 +E   L V+    KKA        + +   F       + + +   +     + 
Sbjct: 266 AGAVSTMEHHVLYVMDETDKKAVATRIAARDGRVIMFVDTKRGVDRMVKRLLADGVRASG 325

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG  S   +   +D FK G    LIAT V   GI + D  +++  +        LH+  
Sbjct: 326 LHGGRSQPQRNRTLDWFKTGEVTALIATNVAARGIHIDDLDLVVNVDPPTDHKDYLHR-G 384

Query: 581 GRVGRGEEISSCILLYHP 598
           GR  R  E  S + L  P
Sbjct: 385 GRTARAGESGSVVTLVLP 402


>gi|300690871|ref|YP_003751866.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           PSI07]
 gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           PSI07]
          Length = 495

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 121/296 (40%), Gaps = 37/296 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q Y+ + KY + T +   ++ G +    + + L R       I++ T
Sbjct: 93  RALILTPTRELADQVYDNVAKYGKYTALRSAVVFGGVDMNPQTEQLRR----GVEILVAT 148

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLV 436
                D     S+   ++ ++++DE  R      L   Q+       ++   P  R TL+
Sbjct: 149 PGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQR-------IINLLPAHRQTLL 201

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I K+      R P    +   N   + + ++   + +G K   +   + ++ 
Sbjct: 202 FSATFSPEIKKLAASYL-RHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQRA 260

Query: 497 E----------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E          SN +    R     E    +   IHG  +  ++   +++FK GT  +L+
Sbjct: 261 EQGLPSQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGTVDVLV 320

Query: 547 ATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT V   G+D+     +I      NAE +    +H++ GR GR       + L+ P
Sbjct: 321 ATDVAARGLDISQMPCVINFDLPFNAEDY----VHRI-GRTGRAGASGDALSLFAP 371


>gi|198476381|ref|XP_001357350.2| GA17489 [Drosophila pseudoobscura pseudoobscura]
 gi|198137669|gb|EAL34419.2| GA17489 [Drosophila pseudoobscura pseudoobscura]
          Length = 578

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 132/306 (43%), Gaps = 36/306 (11%)

Query: 302 VGSGKTLVALIAM-------AAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   L+ +       A  +E G  QAVI++P   LA Q Y   +K++  + + + 
Sbjct: 208 TGSGKTAAFLVPILNLLLTDAVDLEIGKPQAVIVSPTRELAIQIYHEARKFSHESYLKIS 267

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF-- 406
           I+ G     ++    E I  G  H++I T     D ++     +     +++DE  R   
Sbjct: 268 ILYGGTSVKYQN---ESIMMG-CHLLIATPGRLLDFVERAFITFDDTRFLVMDEADRMLD 323

Query: 407 -GVQQRL-KLTQKAT--APHVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIK 459
            G  + + K+    T  A H  LM +   P+ +   +   L +     I         +K
Sbjct: 324 MGFSESMRKIVTHCTMRAQHQTLMFSATFPQEIQRMAGEFLNNYIFVTIGVVGGACSDVK 383

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
             I  + + ++   +L  +L E      +   +E K+ ++F   +  + S  EH T+SI 
Sbjct: 384 QTIYEVTKYNKR-RKLIDILKESADGTIVF--VETKRGADF---LASYLSEAEHPTTSI- 436

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG      +E  +  FK G  K+LIAT+V   G+D+ +   ++  +        +H++
Sbjct: 437 --HGDRLQSQREQALRDFKTGKMKVLIATSVASRGLDIKNVKHVVNYDMPKTIDDYVHRI 494

Query: 580 RGRVGR 585
            GR GR
Sbjct: 495 -GRTGR 499


>gi|16197947|gb|AAL13744.1| LD21880p [Drosophila melanogaster]
          Length = 680

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 139/328 (42%), Gaps = 43/328 (13%)

Query: 302 VGSGKTLVALIAM------AAAVEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++ M        ++E G  A+  IMAP   L  Q  + I+K++++  +   
Sbjct: 12  TGSGKTLAFILPMFRHILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPV 71

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G    + +   L+R     A II+ T     D +           ++  V++DE  R
Sbjct: 72  CVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADR 127

Query: 406 F---GVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
               G + Q +++          +M +   PR +           +   +   +KPI+ +
Sbjct: 128 MFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQM-----------EALARRILKKPIEVI 176

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS 517
           +   + + + +E+  V+L++  K + +   +   +E+     F    E  + L      +
Sbjct: 177 VGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKA 236

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 +HG +   D++S +  FK+G  +LLIAT+V   G+DV D  +++  +  +    
Sbjct: 237 SYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYED 296

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +H+  GR GR  +  S      P  S+
Sbjct: 297 YVHRC-GRTGRAGKKGSAYTFITPEQSR 323


>gi|20149756|ref|NP_619610.1| eukaryotic initiation factor 4A-III [Mus musculus]
 gi|42560197|sp|Q91VC3|IF4A3_MOUSE RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|14198152|gb|AAH08132.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|15277517|gb|AAH12862.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|74138617|dbj|BAE27130.1| unnamed protein product [Mus musculus]
 gi|74142343|dbj|BAE31931.1| unnamed protein product [Mus musculus]
 gi|74146845|dbj|BAE41387.1| unnamed protein product [Mus musculus]
 gi|74186129|dbj|BAE34233.1| unnamed protein product [Mus musculus]
 gi|74188979|dbj|BAE39256.1| unnamed protein product [Mus musculus]
 gi|74212198|dbj|BAE40258.1| unnamed protein product [Mus musculus]
 gi|74214032|dbj|BAE29433.1| unnamed protein product [Mus musculus]
 gi|74220630|dbj|BAE31525.1| unnamed protein product [Mus musculus]
 gi|122889626|emb|CAM14996.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|123264877|emb|CAM18884.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|148702746|gb|EDL34693.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 [Mus musculus]
          Length = 411

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 148/343 (43%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    +++   ++      QA+I+AP
Sbjct: 61  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAP 114

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 115 TRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 167

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   P   V+L++AT     L 
Sbjct: 168 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 227

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEG 482
           +T+    D  +I  K      + IK   + + R +              I +  +  +  
Sbjct: 228 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 287

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 288 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 328

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 329 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 370


>gi|163943135|ref|YP_001648019.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|163865332|gb|ABY46391.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 481

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 130/324 (40%), Gaps = 42/324 (12%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI--VDEQHR 405
            + G  P A ++  L++    + HI++GT     D I+   L       LVI   DE   
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLN 160

Query: 406 FG-VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            G + Q   +  +     + ++ +  +P+ +   S   +D     E       IK   I 
Sbjct: 161 MGFIDQVEAIIDELPKKRMTMLFSATLPKDVEKLSRTYMDSPTHIE-------IKATGIT 213

Query: 465 INRIDEVIERLK----------VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            ++I+  +  +K          V   E   +  I  + +E  +  F+ + +R N   +  
Sbjct: 214 TDKIEHTLFEMKEEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVFQQL-KRVNYPCDK- 271

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      +
Sbjct: 272 ------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKES 325

Query: 575 QLHQLRGRVGRGEEISSCILLYHP 598
            +H+  GR GR       I    P
Sbjct: 326 YVHRT-GRTGRAGNNGKAITFMTP 348


>gi|46907469|ref|YP_013858.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093505|ref|ZP_00231267.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 4b
           H7858]
 gi|226223849|ref|YP_002757956.1| ATP-dependent RNA helicase (DEAD motif) [Listeria monocytogenes
           Clip81459]
 gi|254824696|ref|ZP_05229697.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J1-194]
 gi|254852700|ref|ZP_05242048.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL R2-503]
 gi|254932440|ref|ZP_05265799.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HPB2262]
 gi|255522060|ref|ZP_05389297.1| ATP-dependent RNA helicase (DEAD motif) [Listeria monocytogenes FSL
           J1-175]
 gi|300765280|ref|ZP_07075264.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N1-017]
 gi|46880737|gb|AAT04035.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018123|gb|EAL08894.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 4b
           H7858]
 gi|225876311|emb|CAS05020.1| Putative ATP-dependent RNA helicase (DEAD motif) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606021|gb|EEW18629.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL R2-503]
 gi|293583997|gb|EFF96029.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HPB2262]
 gi|293593935|gb|EFG01696.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J1-194]
 gi|300513963|gb|EFK41026.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N1-017]
 gi|332311691|gb|EGJ24786.1| ATP-dependent RNA helicase dbpA [Listeria monocytogenes str. Scott
           A]
          Length = 470

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 124/310 (40%), Gaps = 31/310 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKT    I +A  +E      QA+I+ P   LA Q         +  ++   
Sbjct: 40  VAKSQTGSGKTAAFAIPIAEQIEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAA 99

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
            I G  P A ++  L +    + HI++GT     D I+           L+L  VDE   
Sbjct: 100 AIYGQSPFAKQKLELSQ----KNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLS 155

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G   +++  L++       L  +AT       L      D   I        PI  V +
Sbjct: 156 MGFIDQVEDILSRLPKQRQNLFFSATMPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEM 215

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             +  ++ ++   V+++E   +  I           F +   + + L +     ++ IHG
Sbjct: 216 QTDNKEKTLK--DVLITENPDSAII-----------FCNTKNQVDELTDLLDVKVSKIHG 262

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +   D+   MD FK+G  + LIAT V   GIDV + S++I  +        +H++ GR 
Sbjct: 263 GLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRI-GRT 321

Query: 584 GRGEEISSCI 593
           GR  +    I
Sbjct: 322 GRAGKSGKAI 331


>gi|291276231|gb|ADD91316.1| vasa [Seriola quinqueradiata]
          Length = 650

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 76/383 (19%), Positives = 154/383 (40%), Gaps = 68/383 (17%)

Query: 257 VEGKIAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            E  + + + +N+  S    PT  Q+  I  I    S    ++   Q   GSGKT   L+
Sbjct: 218 AEAALCESLSKNVSKSGYVKPTPVQKHGIPII----SAGRDLMACAQ--TGSGKTAAFLL 271

Query: 313 AMAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            +   + A G            +A+I+AP   L  Q Y   +K+   T +   ++ G + 
Sbjct: 272 PILQQLMADGVAASQFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVS 331

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLT 415
             H+   +  I  G  +++ GT     D      +  +KL  +++DE  R        + 
Sbjct: 332 TGHQ---IREICRG-CNVLCGTLGRLLDVIGRGKVGLHKLRYLVLDEADR--------ML 379

Query: 416 QKATAPHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK--------------PAGR 455
                P +  +  +P +P     +TL+ ++    DI ++                     
Sbjct: 380 DMGFEPDMRRLVGSPGMPSKEKRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGAC 439

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             ++   I + +  +  + L ++ + G +   +   +E K++++F   +  F    +  T
Sbjct: 440 SDVEQKFIEVTKFSKREQLLDILKTTGTERTMVF--VETKRQADF---IATFLCQEKVPT 494

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           +SI   HG     ++E  +  F++G C +L+AT+V   G+D+ D   ++  +  +     
Sbjct: 495 TSI---HGDREQREREQALADFRSGRCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEY 551

Query: 576 LHQLRGRVGRGEEISSCILLYHP 598
           +H++ GR GR       +  Y P
Sbjct: 552 VHRI-GRTGRCGNTGRAVSFYDP 573


>gi|289668227|ref|ZP_06489302.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 640

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 131/322 (40%), Gaps = 41/322 (12%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + +++ A   +   QA+++AP   LA Q  E  +KY +      V  
Sbjct: 52  QAQTGTGKTAAFALPVLSNADLNQLKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLP 111

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF 406
           + G  P A +  AL+R      H+++GT     D +        Q   L+L   DE  R 
Sbjct: 112 VYGGQPYAQQLSALKR----GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRM 167

Query: 407 G----VQQRLK-LTQKATAPHVLLMTATPIPRTL-----VLTSLGDIDISKITEKPAGRK 456
           G    V+  LK L +K     V L +AT  P         L    ++ I+  T   A  +
Sbjct: 168 GFIDDVEAVLKKLPEKR---QVALFSATMPPAICRIAQTYLKDPAEVTIAAKTTTSANIR 224

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
                +  ++++D +   L+V   +G   +           +  ++  E      +    
Sbjct: 225 QRYWWVSGLHKLDALTRILEVEPFDGMIIF-----------ARTKAGTEELAQKLQARGL 273

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           + A I+G M    +E  +   K+G   +L+AT V   G+DV   S ++  +  +   + +
Sbjct: 274 AAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYV 333

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           H++ GR GR       IL   P
Sbjct: 334 HRI-GRTGRAGRNGDAILFVTP 354


>gi|226227108|ref|YP_002761214.1| ATP-dependent DNA helicase RecQ [Gemmatimonas aurantiaca T-27]
 gi|226090299|dbj|BAH38744.1| ATP-dependent DNA helicase RecQ [Gemmatimonas aurantiaca T-27]
          Length = 598

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 1/99 (1%)

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           R  VER  ++           HG + D  ++   D+F     ++++AT+   +GID  D 
Sbjct: 252 RKAVERVTAVLLRGRIKATAYHGGLDDRQRQRAQDAFMEERSRVIVATSAFGMGIDKPDV 311

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             +++ ++    L   +Q  GR GR  + S+C+LL+  P
Sbjct: 312 R-LVVHHSMPGTLESYYQEAGRAGRDGQASTCVLLHSYP 349


>gi|195130219|ref|XP_002009550.1| GI15175 [Drosophila mojavensis]
 gi|193908000|gb|EDW06867.1| GI15175 [Drosophila mojavensis]
          Length = 1229

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 156/366 (42%), Gaps = 50/366 (13%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AAA 317
           +LR + F  PT  Q  AI  I   MS ++ ++ I +   GSGKTL  ++ M        A
Sbjct: 547 VLRKLGFEKPTPIQCQAIPAI---MSGRD-LIGIAK--TGSGKTLAFILPMFRHILDQPA 600

Query: 318 VEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           +E G  A+  IMAP   L  Q  + I+K++++  +    + G    + +   L+R     
Sbjct: 601 LEDGDGAIAIIMAPTRELCMQIGKDIRKFSRSLGLRPVCVYGGTGISEQIAELKR----G 656

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF---GVQ-QRLKLTQKATAPHV 423
           A II+ T     D +           ++  V++DE  R    G + Q +++         
Sbjct: 657 AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQ 716

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +M +   PR +   +   +           +KP++ ++   + + + +E+  V+LS+  
Sbjct: 717 TVMFSATFPRQMEALARRIL-----------KKPVEVIVGGRSVVCKDVEQHVVILSDEA 765

Query: 484 KAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDS 536
           K + +   +   +E+     F    E  + L      +      +HG +   D++S +  
Sbjct: 766 KFFKLLELLGVYQETGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIID 825

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR           
Sbjct: 826 FKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRC-GRTGRAGNKGCAFTFI 884

Query: 597 HPPLSK 602
            P  S+
Sbjct: 885 TPEQSR 890


>gi|126664017|ref|ZP_01735011.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
 gi|126623966|gb|EAZ94660.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
          Length = 448

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 138/328 (42%), Gaps = 42/328 (12%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE----AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           M+ I Q   G+GKT   L+ +    +       + VI+ P   L  Q  E ++K T+   
Sbjct: 42  MMGIAQ--TGTGKTFAYLLPILKQWKFQNNESARIVILVPTRELVVQVAEEVEKLTKYMS 99

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA----LFQDSI----QYYKLILVIVD 401
           +    I G +    +RKAL   A G   I++GT      L  D +    +  KL++   D
Sbjct: 100 VRTLGIYGGVNINTQRKAL---AQG-VDILVGTPGRVMDLGLDGVLRFDELQKLVIDEFD 155

Query: 402 EQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           E    G + +L   L+        +L +AT       +T   D  + +  E P     + 
Sbjct: 156 EILNLGFRTQLTSILSMMRGKKQNILFSAT-------MTEEVDAMLDEYFEFPE-EVSLA 207

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-----SNFRSVVERFNSLHEHF 514
               P+ +I++++ ++   L++      +  + E  +      +N R V   F +L E F
Sbjct: 208 QSGTPLEQIEQIVYKVPNFLTKLNMLKHLVRETETMERVLIFVNNKRIVDLVFETLDEEF 267

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEH 570
                +IH   S   + + M SF+ G  + L+ T ++  G+D+ D + +I     E  E 
Sbjct: 268 PGQFGVIHSNKSQNYRLNTMASFQAGELRGLVTTDIMARGLDISDITHVINLQFTEEPEK 327

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +    +H++ GR GR ++    I L  P
Sbjct: 328 Y----MHRI-GRTGRADKTGIAISLVSP 350


>gi|157963312|ref|YP_001503346.1| ATP-dependent RNA helicase DbpA [Shewanella pealeana ATCC 700345]
 gi|157848312|gb|ABV88811.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 469

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 139/349 (39%), Gaps = 61/349 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I QG  GSGKT    + +   ++      Q +++ P   LA Q  + I+   +    I V
Sbjct: 53  IGQGKTGSGKTAAFGLGLLHKLDVKRFRIQCLVLCPTRELADQVAKEIRTLARGIHNIKV 112

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P   +  +LE   HG AHII+GT     D +   +L L     +++DE  R  
Sbjct: 113 LTLCGGVPMGPQIGSLE---HG-AHIIVGTPGRIIDHLDRGRLDLENVHTLVLDEADRML 168

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA--------G 454
             G Q  L+  + +       LL +AT  P  +   S+ D    KI  KP          
Sbjct: 169 EMGFQVELEGIMDRMPIERQTLLFSAT-FPEQI--QSIAD----KIMFKPVLVKVASTHA 221

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSLHE 512
              I+     +   ++ +  LK++L + +   A   C    E K+   +   + F     
Sbjct: 222 TSTIEQHFYEVGNNNDRMRALKLLLLQYRPESAVVFCNTKRETKDVAAQLKNDGF----- 276

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               S+  +HG +   D++  +  F N +  +++AT V   G+D+     +I  +  +  
Sbjct: 277 ----SVVALHGDLEQRDRDQTLLQFANKSVSIMVATDVAARGLDIDALDAVINYHVAYDT 332

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
              +H++ GR GR     S    Y                N EDG+ IA
Sbjct: 333 EVHIHRI-GRTGRAGSKGSAHTFY----------------NDEDGYKIA 364


>gi|26344810|dbj|BAC36054.1| unnamed protein product [Mus musculus]
          Length = 411

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 148/343 (43%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    +++   ++      QA+I+AP
Sbjct: 61  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAP 114

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 115 TRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 167

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   P   V+L++AT     L 
Sbjct: 168 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 227

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEG 482
           +T+    D  +I  K      + IK   + + R +              I +  +  +  
Sbjct: 228 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 287

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 288 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 328

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 329 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 370


>gi|70733057|ref|YP_262830.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf-5]
 gi|68347356|gb|AAY94962.1| ATP-independent RNA helicase DbpA [Pseudomonas fluorescens Pf-5]
          Length = 461

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 138/331 (41%), Gaps = 56/331 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I Q   GSGKT    I +   +     G QA+++ P   LA Q  + +++  +    I V
Sbjct: 47  IAQAKTGSGKTAAFGIGLLNPINPRYFGCQALVICPTRELADQVAKEVRRLARAEDNIKV 106

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  ++   L+L     +++DE  R  
Sbjct: 107 LTLCGGVSFGPQIASLE---HG-AHIIVGTPGRIQQHLRKGSLVLDGLNTLVLDEADRM- 161

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++   + I ++  K   R P +TV     
Sbjct: 162 ------LDMGFYDAIEDIIEKTPSRRQTLLFSATYPVGIKQLASKFM-RDP-QTVKAEAF 213

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH--------------- 511
             D  IE         ++ Y I P   E++ S    V+  F                   
Sbjct: 214 HDDTQIE---------QRFYEISP---EERMSAVTKVLHHFRPASCVAFCFTKQQVQETV 261

Query: 512 EHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +H T+   S   +HG +   D++ V+  F N +  +L+AT V   G+D +DA  ++I N 
Sbjct: 262 DHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD-IDALDMVI-NV 319

Query: 569 EHFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
           E    +++H  R GR GR  E    + L  P
Sbjct: 320 ELARDSEIHIHRVGRTGRAGEKGIAVSLVAP 350


>gi|58581173|ref|YP_200189.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623095|ref|YP_450467.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58425767|gb|AAW74804.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367035|dbj|BAE68193.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 634

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 133/319 (41%), Gaps = 41/319 (12%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + +++ A   +   QA+++AP   LA Q  E  +KY +      V  
Sbjct: 52  QAQTGTGKTAAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLP 111

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF 406
           + G  P A +  AL+R      H+++GT     D +        Q   L+L   DE  R 
Sbjct: 112 VYGGQPYAQQLSALKR----GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRM 167

Query: 407 G----VQQRLK-LTQKATAPHVLLMTAT--PIPRTLVLTSLGD---IDISKITEKPAGRK 456
           G    V+  LK L +K     V L +AT  P  R +  T L D   + I+  T   A  +
Sbjct: 168 GFIDDVEAVLKKLPEKR---QVALFSATMPPAIRRIAQTYLKDPAEVIIAAKTTTSANIR 224

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
                +  ++++D +   L+V   +G   +           +  ++  E      +    
Sbjct: 225 QRYWWVSGLHKLDALTRILEVEPFDGMIIF-----------ARTKAGTEELAQKLQARGL 273

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           + A I+G M    +E  +   K+G   +L+AT V   G+DV   S ++  +  +   + +
Sbjct: 274 AAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYV 333

Query: 577 HQLRGRVGRGEEISSCILL 595
           H++ GR GR       IL 
Sbjct: 334 HRI-GRTGRAGRTGDAILF 351


>gi|297581515|ref|ZP_06943438.1| primosomal protein N [Vibrio cholerae RC385]
 gi|297534353|gb|EFH73191.1| primosomal protein N [Vibrio cholerae RC385]
          Length = 734

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 85/199 (42%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P   QE AI  I    SQ+     +L+G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 199 PKLIQEQAIA-IAAVNSQQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 258 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 312 FAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALTG 371

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 372 KYHHLQLTQRAGNALPTRN 390


>gi|157128260|ref|XP_001661370.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882257|gb|EAT46482.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 639

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 140/334 (41%), Gaps = 35/334 (10%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     ++         G  A+I+AP   LAQQ  +    + +  +I   
Sbjct: 133 TGSGKTLSYLLPALMHIDQQSRLRRGDGPIALILAPTRELAQQIKQVTDDFGRAMKIKNT 192

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF-- 406
            + G      +R+  + + +G   I+I T       L  +     +   +++DE  R   
Sbjct: 193 CLFGG---GAKRQQGDDLKYG-VEIVIATPGRLIDFLSSEHTNLRRCSYLVLDEADRMLD 248

Query: 407 -GVQQRLKLTQKATAP-HVLLMTATPIPRT---LVLTSLGD-IDISKITEKPAGRKPIKT 460
            G + +++   +   P H  LM +   P     LV   L D I I+  + K A    I  
Sbjct: 249 MGFEPQIRAIIEQIRPDHQTLMWSATWPDAVSRLVKDYLKDYIQINVGSLKLAANHNI-L 307

Query: 461 VIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            II + +  E   +L ++L E   +K       IE KK  +   +  +   L + + +  
Sbjct: 308 QIIDVCQEHEKEAKLSILLREIMAEKECKTIIFIETKKRVD--DITRKV--LRDGWPA-- 361

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG  S  ++E  ++SF++G   +LIAT V   G+DV D   +I  +        +H+
Sbjct: 362 MCIHGDKSQREREYTLNSFRSGKNPILIATDVAARGLDVDDVKFVINFDYPTTSEDYIHR 421

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           + GR GR     +    + P  +  +   + VLK
Sbjct: 422 I-GRTGRSNNTGTAYTFFTPDNAGRARELIDVLK 454


>gi|73663275|ref|YP_302056.1| helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72495790|dbj|BAE19111.1| putative helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 300

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 45/270 (16%)

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQ-----AHIIIGT-HALFQDSIQYYKLILVIVDEQ 403
           +++EI +  + +A   + ++ +  GQ      H II T H L++     +   L+IVDE 
Sbjct: 25  VVIEI-SMRIKKAFSSEQIDVLYQGQTQRFDGHFIISTVHQLYRFK---HHFDLIIVDEV 80

Query: 404 HRF------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA--GR 455
             F       +Q+ +    KAT  H+  MTATP PR L    L  ++ S +   PA   R
Sbjct: 81  DAFPLVMDHSLQEAITHASKATHCHIF-MTATP-PRHL----LKKMNPSDVITLPARYHR 134

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL----- 510
           +P+             + R K    +  K  +   +I +K+    R  +  F+++     
Sbjct: 135 QPLP------------VPRFKYFKLKQHKIQYALLKILKKQILTERYTLVFFDNINLMKT 182

Query: 511 --HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
             H +     ++ +    D  +   + + +NG  +++  TT++E G  +    +I+  N+
Sbjct: 183 AYHRYKKEITSLTYVYSEDALRFEKVKALRNGGYQVIFTTTILERGFTMAKLDVIVC-NS 241

Query: 569 EHFGLAQLHQLRGRVGRG-EEISSCILLYH 597
           ++F  + L Q+ GRVGR  EE +  +L  H
Sbjct: 242 QNFNKSALIQIAGRVGRKIEEPTGLVLFLH 271


>gi|67613960|ref|XP_667337.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           hominis TU502]
 gi|126643927|ref|XP_001388148.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           parvum Iowa II]
 gi|10720033|sp|O02494|IF4A_CRYPV RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|2150025|gb|AAB58726.1| translation initiation factor [Cryptosporidium parvum]
 gi|2155304|gb|AAB58799.1| translation initiation factor [Cryptosporidium parvum]
 gi|54658467|gb|EAL37111.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           hominis]
 gi|126117225|gb|EAZ51325.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           parvum Iowa II]
 gi|323508859|dbj|BAJ77322.1| cgd1_880 [Cryptosporidium parvum]
 gi|323510549|dbj|BAJ78168.1| cgd1_880 [Cryptosporidium parvum]
          Length = 405

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 156/401 (38%), Gaps = 62/401 (15%)

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
           N   NP   ++ +  S       YDE++               E    +N+EG + + I 
Sbjct: 3   NSEQNPPSEENVQVASTGEIESNYDEIV---------------ECFEALNLEGDLLRGIF 47

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQ 323
                 P+  Q+  IK IL           I Q   G+GKT   +IA    ++      Q
Sbjct: 48  AYGFEKPSAIQQRGIKPILDGYDT------IGQAQSGTGKTATFVIAALQKIDYSLNACQ 101

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT- 382
            +++AP   LAQQ  +         ++      G       R  + ++  G  H+++GT 
Sbjct: 102 VLLLAPTRELAQQIQKVALALGDYCELRCHACVGG---TSVRDDMNKLKSG-VHMVVGTP 157

Query: 383 ----HALFQDSIQYYKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPR 433
                 L +  ++   L L I+DE        F VQ      +      V L +AT    
Sbjct: 158 GRVFDMLDKGYLRVDNLKLFILDEADEMLSRGFKVQIHDIFKKLPQDVQVALFSATMPNE 217

Query: 434 TLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINR----IDEVI---ERLKVVLSEGKK 484
            L LT+    D  +I   ++    + I+   + + +    +D +I   E L +V     +
Sbjct: 218 ILHLTTQFMRDPKRILVKQEELTLEGIRQFYVGVEKDEWKMDTLIDLYETLTIV-----Q 272

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A   C         N R  V++          + + +HG M   D+E +M  F++G+ ++
Sbjct: 273 AIIYC---------NTRRRVDQLTKQMRERDFTCSSMHGDMDQKDREVIMRQFRSGSSRV 323

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           LI T ++  GIDV   S++I  +        +H++ GR GR
Sbjct: 324 LITTDLLARGIDVQQVSLVINYDLPVSPETYIHRI-GRSGR 363


>gi|332218192|ref|XP_003258243.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Nomascus leucogenys]
          Length = 783

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 123/305 (40%), Gaps = 54/305 (17%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  +     T+  ++ V    G  P   +    ER+ +G   I++GT
Sbjct: 262 QVLVLAPTRELANQVSKDFSDITK--KLSVACFYGGTPYGGQ---FERMRNG-IDILVGT 315

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATA---PHVLLMT 427
               +D IQ  KL L     V++DE  +         V++ L +  K  +   P  LL +
Sbjct: 316 PGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDDPQTLLFS 375

Query: 428 AT------PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP---------INRIDEVI 472
           AT       + +  + ++   +D+        G+K  KT I             R   + 
Sbjct: 376 ATCPHWVFNVAKKYMKSTYEQVDL-------IGKKTQKTAITVEHLAIKCHWTQRAAVIG 428

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           + ++V      +    C   +E +E +  S +++              +HG +    +E 
Sbjct: 429 DVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ----------DAQSLHGDIPQKQREI 478

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            +  F+NG+  +L+AT V   G+D+ +  ++I  +      + +H+  GR GR      C
Sbjct: 479 TLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHR-SGRTGRAGRTGVC 537

Query: 593 ILLYH 597
           I  Y 
Sbjct: 538 ICFYQ 542


>gi|307199044|gb|EFN79768.1| DEAD-box helicase Dbp80 [Harpegnathos saltator]
          Length = 473

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 134/325 (41%), Gaps = 64/325 (19%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P++ QE+A+  +L D  Q      I Q   G+GKT   ++AM + V+      Q + ++
Sbjct: 108 APSRIQETALPTLLADPPQN----MIAQSQSGTGKTAAFVLAMLSRVDTTKEYPQVLCLS 163

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K ++    I       +  A R + + R +    HIIIGT     D
Sbjct: 164 PTYELAIQTGEVAAKMSRYCPEI------KIKYAVRGEEISRGSKVTEHIIIGTPGKVLD 217

Query: 389 SIQYYKLI------LVIVDEQHRF----GVQQRLKLTQKA--TAPHVLLMTATPIPRTLV 436
             Q +K        + ++DE        G Q +     K       ++  +AT  P  + 
Sbjct: 218 WGQKFKFFDLNKISVFVLDEADVMIATQGHQDQCIRIHKMLPRTCQMMFFSATYEPEVMN 277

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              +       I   P        +II + R +E ++ +K       + Y  C  +++K 
Sbjct: 278 FAEI-------IVSNP--------LIIRLLREEESLDNIK-------QYYIKCKNVDDKY 315

Query: 497 E--SNFRSVV------------ERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKN 539
              +N   V+            +  + L E  T    ++AI+ G ++   + SV+D F+ 
Sbjct: 316 TAITNIYGVITIGQAIIFCHTKKTASWLAEKMTKDGHAVAILSGDLTVEQRISVLDRFRA 375

Query: 540 GTCKLLIATTVIEVGIDVVDASIII 564
           G  K+LI T V+  GIDV   +I++
Sbjct: 376 GLEKVLITTNVLARGIDVEQVTIVV 400


>gi|145332383|ref|NP_001078148.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|332641919|gb|AEE75440.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 402

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 125/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 70  IQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 129

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 130 ACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMF--VLDEADEM 183

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++    +   P   V + +AT  P  L +T        K   KP        V
Sbjct: 184 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMSKP--------V 228

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 229 RILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 288

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 289 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQ 348

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 349 PENYLHRI-GRSGR 361


>gi|330447635|ref|ZP_08311283.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491826|dbj|GAA05780.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 461

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 162/391 (41%), Gaps = 75/391 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I QG  GSGKT    + +   +       Q +++ P   LA Q  + I++  +    I V
Sbjct: 45  IAQGKTGSGKTAAFGLGLLQNLRVKRFRVQTLVLCPTRELADQVAKEIRRLARAIHNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G MP   +  +LE   HG AHII+GT    ++ I+   L L     +++DE  R  
Sbjct: 105 LTLCGGMPFGPQIGSLE---HG-AHIIVGTPGRVEEHIRKGFLCLDELNTLVLDEADRML 160

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
             G Q  L            ++   P  R  +L S    D      K   R P++ V + 
Sbjct: 161 EMGFQDSLDA----------IIEGAPRDRQTLLFSATYPDQIASIAKRIMRNPVQ-VKVE 209

Query: 465 IN-----------RIDEVIERLKVV---LSEGKKAYWI--CPQIEEKKESNFRSVVERFN 508
            N           ++D   ER++ V   LS+ +    +  C    E +E +        +
Sbjct: 210 SNHDNSSISQHFYKVDNNEERMRAVRLLLSQHRPESCVVFCNTKREAQEIS--------D 261

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L  +  S+IA+ HG +   +++  +  F N +  +L+AT V   G+D+ +   +I  + 
Sbjct: 262 DLEAYGFSAIAL-HGDLEQRERDRTLVLFANKSRSILVATDVAARGLDIDNLDAVINYHL 320

Query: 569 EHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
                  +H++ GR GR G +  +C L      S   + ++++L          E+ L +
Sbjct: 321 ARDTEVHVHRI-GRTGRAGSKGIACSL-----FSDKEHYKVALL----------EDYLDR 364

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             EGE+L       P  L+ QP    +++ +
Sbjct: 365 PIEGEML------PPDHLLDQPTFRPAMITL 389


>gi|315641829|ref|ZP_07896833.1| ATP-dependent helicase RecQ [Enterococcus italicus DSM 15952]
 gi|315482504|gb|EFU73043.1| ATP-dependent helicase RecQ [Enterococcus italicus DSM 15952]
          Length = 590

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 97/223 (43%), Gaps = 25/223 (11%)

Query: 386 FQDSIQYYKLILVIVDEQH---RFGVQQRLK-------LTQKATAPHVLLMTATPIPRTL 435
           F + +++  L LV +DE H    +G   R         L Q AT P ++ +TAT  P   
Sbjct: 129 FTELLRHVTLSLVAIDEAHCISHWGHDFRPSYLYLAQWLQQFATTPTIVALTATATPEVA 188

Query: 436 V-LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
             +  L  I   ++ +    R+ +   ++   +   ++E LKV   +    Y        
Sbjct: 189 QDICQLLMIAPEQVIQTGFARENLAFQVVKDQKDVYLLEYLKVNHKQSGIVY-------- 240

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
              ++ R  VER   L +H   ++ + HG MS+  +    D+F     ++++AT    +G
Sbjct: 241 ---ASTRKEVERLYHLLQHQKIAVGMYHGGMSEEARSRNQDAFLYDQIQVMVATNAFGMG 297

Query: 555 IDVVDASIIIIENAEHFG-LAQLHQLRGRVGRGEEISSCILLY 596
           I+  +   +I  +A+  G +   +Q  GR GR    S  ILLY
Sbjct: 298 INKSNLRFVI--HAQIPGNIESYYQEAGRAGRDGLPSEAILLY 338


>gi|299135345|ref|ZP_07028536.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
 gi|298590322|gb|EFI50526.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
          Length = 653

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 133/329 (40%), Gaps = 46/329 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A  +          A   A+I+AP   LA Q H E    Y  
Sbjct: 40  LVSAQTGSGKTVAYGLAIAKNLLGDAERFPRAAAPLALIVAPTRELALQVHRELTWLYHY 99

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILV 398
               IV  + G  P+  +R+    +A G AHI++GT     D ++  +L        +L 
Sbjct: 100 ADARIVSCVGGMDPRREQRE----LAEG-AHIVVGTPGRLCDHLRRGRLDISELKAVVLD 154

Query: 399 IVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPR---TLVLTSLGDIDISKITEKPA 453
             DE    G ++ ++   + T      LL +AT  PR   TL           ++     
Sbjct: 155 EADEMLDLGFREDMEFILETTPETRRTLLFSAT-FPRGIITLAKQYQQQAFRVEVAGDEG 213

Query: 454 GRKPIKTVIIPINRIDEVIERLKV-VLS--EGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           G   I    I I   D  +E   V VL   E   A   C         N R+ V+     
Sbjct: 214 GHADIDYRAIRIAASD--VEHATVNVLRFFESPSALVFC---------NTRNAVKHLQVA 262

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 S+  + G ++  ++   + + ++G  ++ +AT V   GID+ +  ++I  +A+ 
Sbjct: 263 LMERGFSVVALSGELTQNERTQALQALRDGRARVCVATDVAARGIDLPNLDLVI--HADL 320

Query: 571 FGLAQLHQLR-GRVGRGEEISSCILLYHP 598
              A++ Q R GR GR       +LL  P
Sbjct: 321 PNDAEVLQHRSGRTGRAGRKGVSVLLVPP 349


>gi|292897858|ref|YP_003537227.1| primosomal protein N' [Erwinia amylovora ATCC 49946]
 gi|291197706|emb|CBJ44801.1| primosomal protein N' (ATP-dependent helicase) [Erwinia amylovora
           ATCC 49946]
          Length = 732

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I +++Q     V+++
Sbjct: 221 LLAGITGSGKTEVYLSVLENILAGGKQALVLVPEIGLTPQT----IARFSQRFNAPVDVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   G+  I+IGT  ALF     + +L ++++DE+H    +Q+
Sbjct: 277 HSGLNDSERLAVWLRARSGETAIVIGTRSALF---TPFARLGVIVIDEEHDSSYKQQ 330


>gi|229118684|ref|ZP_04248036.1| Helicase domain protein [Bacillus cereus Rock1-3]
 gi|228664876|gb|EEL20366.1| Helicase domain protein [Bacillus cereus Rock1-3]
          Length = 449

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 149/354 (42%), Gaps = 70/354 (19%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           +  QE A++ +++ + QK      +    G+GKT +    +A A++ G +  I  P   +
Sbjct: 108 STGQELAVQGVMEAVKQKESFF--IWAVCGAGKTEMLFYGIAEALQKGERVCIATPRTDV 165

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             +    +K+   N  I V  + G      +  AL         ++  TH L    ++YY
Sbjct: 166 VLELAPRLKEVFPN--INVAALYGGSLDREKDAAL---------VVATTHQL----LRYY 210

Query: 394 KLILVIV-----------DEQHRFGVQQRLKLTQKATAPHVLLMTATP---IPRTLVLTS 439
           +   V++           D+  ++ V+Q +K  +KA     + +TATP     R L    
Sbjct: 211 RAFHVMIVDEIDAFPYHADQMLQYAVKQAMK--EKAAC---IYLTATPDEEWKRNLRKGK 265

Query: 440 LGDIDISKITEKPAGRKPIKTVIIP------------IN-RIDEVI-ERLKVVLSEGKKA 485
              I +S       GR     + +P            IN RI +V+ + LKV L++    
Sbjct: 266 QKGIVVS-------GRYHRHPLPVPKFCWCGNWKKSLINKRIPQVLLQWLKVYLNKKHPI 318

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +   P +           +E+ + L +     +A +H    D  ++  + +F+ G   LL
Sbjct: 319 FLFVPHVR---------YIEKMSRLLKLLDDRVAGVHA--EDPMRKEKVAAFRKGEIPLL 367

Query: 546 IATTVIEVGIDVVDASIIIIENAEH-FGLAQLHQLRGRVGRG-EEISSCILLYH 597
           + TT++E G+ V +  + ++   E  F  + L Q+ GRVGR  EE    ++ +H
Sbjct: 368 VTTTILERGVTVKNLQVAVLGTEEEIFSESALVQIAGRVGRSFEEPYGEVIYFH 421


>gi|229816987|ref|ZP_04447269.1| hypothetical protein BIFANG_02242 [Bifidobacterium angulatum DSM
           20098]
 gi|229785732|gb|EEP21846.1| hypothetical protein BIFANG_02242 [Bifidobacterium angulatum DSM
           20098]
          Length = 550

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            H +M +  K  V D+F  G  K+++ATT   +G+D  D   +I + A    L + +Q  
Sbjct: 272 FHAKMDEAGKAYVQDAFLEGRLKVIVATTAFGMGVDKPDVRWVINDGAPS-SLEEYYQEA 330

Query: 581 GRVGRGEEISSCILLY 596
           GR GR  + +SC +++
Sbjct: 331 GRAGRDGKPASCYVIW 346


>gi|126179385|ref|YP_001047350.1| ATP-dependent DNA helicase RecQ [Methanoculleus marisnigri JR1]
 gi|125862179|gb|ABN57368.1| ATP-dependent DNA helicase RecQ [Methanoculleus marisnigri JR1]
          Length = 605

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 143/369 (38%), Gaps = 52/369 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G GK+L   +    A+  GG  V+++P+  L +   + ++       I    I  ++  
Sbjct: 40  TGGGKSLCYQLP---ALVFGGLTVVVSPLIALMKDQVDGLRA----NGIPAATINSSLGY 92

Query: 362 AHRRKALERIAHGQAHIII-----GTHALFQDSIQYYKLILVIVDEQHRFGVQ------- 409
             ++     I  G+  I+           F   I    + L+ +DE H   +        
Sbjct: 93  GEQKIVERVILEGRIRILYVSPERAVQPFFLSLIAKADVRLIAIDEAHCISMWGHNFRPE 152

Query: 410 -QRLKLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA------GRKPIKT 460
            +RL++ ++   T P V+ +TAT IP         DI +      PA       RK +  
Sbjct: 153 YRRLRVLKERFPTVP-VIALTATAIP-----AVQNDIAVELALSNPARFVGSFNRKNLTY 206

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            ++P  R      RL   L+E K    I     +K      + VE    L +   S++  
Sbjct: 207 RVVPKARY---FPRLVAYLNEHKNDAGIIYCFSQK------ATVELAKKLQDKGFSALPY 257

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            H  + D  +    ++F  G   ++ AT    +GID  D   +I  +     +   +Q  
Sbjct: 258 -HAGLPDAVRAEHQEAFSRGDVAIICATVAFGMGIDKPDVRFVIHTDLPK-DIESYYQET 315

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS- 639
           GR GR  E   CIL Y    S+  Y  +  +   E G    ++D+  RK G +L   ++ 
Sbjct: 316 GRAGRDGEPGDCILYY----SRGDYGTIRYIIEKE-GADATQKDVAYRKVGAMLDYCETP 370

Query: 640 -GMPKFLIA 647
               KFL+A
Sbjct: 371 GCRRKFLLA 379


>gi|73620773|sp|Q4R3Q1|IF4A3_MACFA RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|67971846|dbj|BAE02265.1| unnamed protein product [Macaca fascicularis]
          Length = 411

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 61  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 114

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 115 ARELAVQIQKGLLTLGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 167

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   P   V+L++AT     L 
Sbjct: 168 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 227

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEG 482
           +T+    D  +I  K      + IK   + + R +              I +  +  +  
Sbjct: 228 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 287

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 288 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 328

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 329 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 370


>gi|332358037|gb|EGJ35870.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1056]
          Length = 447

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 149/358 (41%), Gaps = 44/358 (12%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAV 318
           Q+ LR++ F   T  QE  I  +L       R L + +   GSGKT   L+ +  M    
Sbjct: 13  QEALRDLNFVEATPVQEKLIPVVLS-----GRDL-VGESKTGSGKTHTFLLPIFQMLDEE 66

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               QAVI AP   LA Q Y+  ++       +I V    G   +A +   LE     Q 
Sbjct: 67  ADSVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGKLE---SSQP 123

Query: 377 HIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           HI+IGT     D ++   L +      +VDE         L +   AT   +    A  +
Sbjct: 124 HIVIGTPGRIYDLVESGDLAIHKAKTFVVDE-----ADMTLDMGFLATVDKI----AGRL 174

Query: 432 PRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGK---- 483
           P+ L           K+  +P  +K    P+   I     I + IE   ++ ++G+    
Sbjct: 175 PKDLQFLVFSATIPQKL--QPFLKKYLSNPVIEQIKTKTVIADTIENW-LLSTKGRDKNA 231

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           + Y I   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN 
Sbjct: 232 QIYQISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|326932508|ref|XP_003212358.1| PREDICTED: ATP-dependent RNA helicase DDX19B-like [Meleagris
           gallopavo]
          Length = 706

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 132/327 (40%), Gaps = 69/327 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+K QE+A+  +L + S +N    I Q   G+GKT   ++AM + VE G    Q + ++P
Sbjct: 341 PSKIQENALPMMLAEPSPQNL---IAQSQSGTGKTAAFVLAMLSRVEPGNKYPQCLCLSP 397

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I+   Q  +   E+    +  A R   LER       I+IGT     D 
Sbjct: 398 TYELALQTGKVIE---QMGKFYPEL---KLAYAVRGNKLERGQKISEQIVIGTPGTVLDW 451

Query: 390 IQYYKLI------LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               K I      + ++DE         +  TQ      + +    P    ++L S    
Sbjct: 452 CSKLKFIDPKKIKVFVLDE------ADVMIATQGHQDQSIRIQRMLPRDCQMLLFSATFE 505

Query: 444 D-----ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           D       K+   P         II + R +E ++ +       K+ Y +C   +EK   
Sbjct: 506 DSVWKFAQKVVPDPN--------IIKLKREEETLDTI-------KQYYVLCNSRDEK--- 547

Query: 499 NFRSVVERFNSL---------HEHFTSS------------IAIIHGRMSDIDKESVMDSF 537
            FR++   + ++         H   T+             +A++ G M    + +V++ F
Sbjct: 548 -FRALCNIYGAITIAQAMVFCHTRKTAGWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 606

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIII 564
           + G  K+L+ T V   GIDV   S++I
Sbjct: 607 REGKEKVLVTTNVCARGIDVEQVSVVI 633


>gi|295394794|ref|ZP_06805009.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972390|gb|EFG48250.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 586

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 135/320 (42%), Gaps = 41/320 (12%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ------AVIMAPIGILAQQHYEFIKKY-TQNTQIIVEI 354
            G+GKT    + + +++ AG +      A+I+AP   LA Q  E +  Y T      V  
Sbjct: 60  TGTGKTAAFALPLLSSI-AGRERPTSPLALILAPTRELAIQVAEALTSYATHLGDFSVLP 118

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRF 406
           I G      +   L+R     AH+++GT     D I+           L+L   DE  + 
Sbjct: 119 IYGGQSYTPQISGLKR----GAHVVVGTPGRVIDHIKRGTLDLSHVEHLVLDEADEMLKM 174

Query: 407 GVQQRLKLTQKATAP--HVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
           G Q+ ++     T P   V L +AT +P ++       L    ++ I   T   A  +  
Sbjct: 175 GFQEDIEEIFAKTNPDRQVALFSAT-MPASIHRITGQYLNDPAEVRIQAKTTTSANIRQR 233

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
              ++  +++D +   L+V   +G   +    Q  E+     ++           F  S 
Sbjct: 234 YLTVMHSHKLDALTRILEVEKYDGIIMFVRTKQETEELADKLKA---------RGF--SA 282

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A I+G +  + +E  +++ ++G+  +L+AT V   G+DV   S+++  +  H   + +H+
Sbjct: 283 AAINGDIPQVVRERTVEALRSGSIDILVATDVAARGLDVERISLVVNFDIPHDTESYVHR 342

Query: 579 LRGRVGRGEEISSCILLYHP 598
           + GR GR       IL   P
Sbjct: 343 I-GRTGRAGRTGEAILFVTP 361


>gi|293376696|ref|ZP_06622919.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
 gi|325845185|ref|ZP_08168493.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
 gi|292644653|gb|EFF62740.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
 gi|325488781|gb|EGC91182.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
          Length = 368

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 142/349 (40%), Gaps = 53/349 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM----AAAVEAGGQAVIM 327
           SPT  QE     I      KN    I Q   G+GKTL  L+ +    +  +EA  QA+I+
Sbjct: 23  SPTPIQEQCYPLI------KNYKDVIAQAQTGTGKTLAFLLPLFENISPDIEAT-QALII 75

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LA Q  E   K  +   I V    G      +   L++      H+II T     
Sbjct: 76  TPTRELALQITEEANKLAEIRNINVLAAYGGRNIGSQLNKLKK----SIHLIIATPGRLI 131

Query: 388 DSIQYYKLIL-----VIVDEQH-------RFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           D ++   + L     V++DE         R  V Q L+ T +      L  +AT  P   
Sbjct: 132 DHLERQTITLDKVKSVVIDEADQMLLMGFRNEVDQILRQTPRNR--QTLCFSATMAPNVK 189

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            L      D + IT +       K V +      E I++  V  ++  KA  +C  +EE 
Sbjct: 190 RLAYRYSYDPTMITIEA------KKVAV------ESIKQELVETTDRWKADALCQVLEE- 236

Query: 496 KESNFRSVV-----ERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            ++ F +++      R + L         +  +IH  ++   +E ++ SF+    + LIA
Sbjct: 237 -DNPFLAIIFCRTKRRADQLFAKMKQRGFNTQVIHSDIAQNKRERILKSFREADLQYLIA 295

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILL 595
           T V   G+D+   + I   +        +H++ GR GR GEE  +C+ +
Sbjct: 296 TDVASRGLDISGVTHIYNYDIPETPETYIHRI-GRTGRAGEEGYTCLFV 343


>gi|212534920|ref|XP_002147616.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|212534922|ref|XP_002147617.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|242791505|ref|XP_002481771.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|210070015|gb|EEA24105.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|210070016|gb|EEA24106.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|218718359|gb|EED17779.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 399

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 147/354 (41%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    ++++ +   V    QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVVRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + LE   +GQ H++ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLE---YGQ-HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT +P      
Sbjct: 157 MIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT-LP------ 209

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E 
Sbjct: 210 ----YDVLDMTTKFMT-DPVRILV----------KRDELTL-EGLKQYFIAV---EKEEW 250

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 251 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 308

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 309 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 357


>gi|312870677|ref|ZP_07730785.1| putative ComF operon protein 1 [Lactobacillus iners LEAF 3008A-a]
 gi|312872602|ref|ZP_07732670.1| putative ComF operon protein 1 [Lactobacillus iners LEAF 2062A-h1]
 gi|311091964|gb|EFQ50340.1| putative ComF operon protein 1 [Lactobacillus iners LEAF 2062A-h1]
 gi|311093788|gb|EFQ52124.1| putative ComF operon protein 1 [Lactobacillus iners LEAF 3008A-a]
          Length = 429

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 140/346 (40%), Gaps = 53/346 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q     D+L  +  +N    ++    G+GKT +   A+   ++ G    +  P   +
Sbjct: 91  TDRQAKVSADLLHAL--QNNQDHLVHAVTGAGKTEMLFKAVEYFLQQGKYVALATPRLDV 148

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             + Y  + +   NT+I          + H + A +     +  II  TH L    ++YY
Sbjct: 149 VNELYPRMCRAFANTKI---------GKYHGKMAQD--PDNEPFIICTTHQL----LKYY 193

Query: 394 KLI-LVIVDEQHRFGVQQRLKL---TQKATAP--HVLLMTATPIPRTLVLTSLGDIDISK 447
           +   L+I+DE   F       L    + A  P      +TATP    L     G++  S 
Sbjct: 194 QAFDLIIIDEVDAFPYVNNPMLYYGAKNAIKPTGQTFYLTATPSKDMLTKVKNGEMGYSL 253

Query: 448 ITEKPAG------------RKPIK-TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + ++  G            RK I    + P      +I+ L  +++ GK      P+I E
Sbjct: 254 LQQRFHGGLLAVPEEYLFWRKYISGESLHPF-----LIKVLNEIINSGKPLLVFVPRIAE 308

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                    +  + ++ +   S + I     SD +++  ++ F+N    +L+ TT++E G
Sbjct: 309 ---------LGLYQTILQKKYSQLVIASVHSSDKNRQQKVEQFRNREISILLTTTILERG 359

Query: 555 IDVVDASIIIIENAEH-FGLAQLHQLRGRVGRG--EEISSCILLYH 597
           +      +I+I   +  +  A L Q+ GRVGR   +++   I  YH
Sbjct: 360 VTFPGVQVIVIAADDAIYTTAGLVQIAGRVGRAATDQVGRVIFCYH 405


>gi|238028205|ref|YP_002912436.1| putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
 gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
          Length = 480

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 120/293 (40%), Gaps = 43/293 (14%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQ-AHRRKALERIAHGQAHI 378
           +A+I+ P   LA Q    +  Y ++T +   ++ G +   PQ A  R+ +E        I
Sbjct: 89  RALILTPTRELADQVAANVHSYAKHTALRSAVVFGGVDMNPQMAELRRGVE--------I 140

Query: 379 IIGTHALFQDSIQYY-----KLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLM 426
           +I T     D +Q       ++ ++++DE  R         +Q+ L L  KA     LL 
Sbjct: 141 LIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKAR--QTLLF 198

Query: 427 TATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-K 483
           +AT  P  + L  T L +    ++    A    +  ++  I   D+    +K++     K
Sbjct: 199 SATFSPEIKKLAATYLTNPQTIEVARSNATATNVTQIVYDIAEGDKQAAVVKLIRDRALK 258

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +    C         N +    R   L E        IHG  S  ++   +++FK G  +
Sbjct: 259 QVIVFC---------NSKIGASRLARLLERDGVVATAIHGDRSQNERMQALEAFKRGEVE 309

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
            L+AT V   G+D+ +   +I  +        +H++ GR GR    G+ +S C
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRI-GRTGRAGASGDALSLC 361


>gi|226941736|ref|YP_002796810.1| primosome assembly protein PriA [Laribacter hongkongensis HLHK9]
 gi|226716663|gb|ACO75801.1| PriA [Laribacter hongkongensis HLHK9]
          Length = 718

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 20/147 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  + A + AG QA+++ P I +  Q    F  ++       + I+
Sbjct: 208 LLFGVTGSGKTELYLRRIEATLAAGRQALVLVPEINLTPQLEARFRARFPATP---MAIL 264

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           T + P   R +A      G+A ++IGT  A+F        L L++VDE+H    +Q+  L
Sbjct: 265 TSHQPDRARSEAWVSAWQGRARLVIGTRLAVF---TPLPDLGLIVVDEEHDASFKQQDGL 321

Query: 415 -----------TQKATAPHVLLMTATP 430
                        +A+ P V+L +ATP
Sbjct: 322 RYSARDLAVWRAHQASVP-VILGSATP 347


>gi|222637699|gb|EEE67831.1| hypothetical protein OsJ_25607 [Oryza sativa Japonica Group]
          Length = 905

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 131/338 (38%), Gaps = 45/338 (13%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           ++I+Q + +    L ++    GSGK++   I      +    AV+++P+  L Q     +
Sbjct: 19  REIIQKVLEGRDCLVVMA--TGSGKSICYQIPPLVTKKT---AVVVSPLLSLMQDQVMSL 73

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
           K++   ++ +    T         K    + +      +   + F  ++Q   + L+ VD
Sbjct: 74  KQHGVKSEYLGSTQTDISVSGQAEKGAFDVLYMTPEKAVSLPSRFWSNLQAAGICLLAVD 133

Query: 402 EQH---RFGVQQRLKLTQK-------ATAPHVLLM-TATPIPRTLVLTSLGDIDISKITE 450
           E H    +G   R +  Q           P V L  TAT   R  + TSL  + I  I  
Sbjct: 134 EAHCISEWGHDFRTEYKQLHMLRDLLVGVPFVALTATATQRVRGDIATSL-TLRIPHIVV 192

Query: 451 KPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
               R  +   +   NR    I+E+++ +    + G      C  I E ++         
Sbjct: 193 GSFDRPNLFYGVKSCNRSMAFINELVKDVSKNCTVGGSTIIYCTTIRETEQ--------- 243

Query: 507 FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
              +HE   ++    +I HGRM +  +E    SF      +++AT    +GID  D   +
Sbjct: 244 ---VHEALVAAGIKSSIYHGRMGNKAREESHRSFVRDEVLVMVATIAFGMGIDKPDVRCV 300

Query: 564 IIENAEHFG----LAQLHQLRGRVGRGEEISSCILLYH 597
           I     H+G    L   +Q  GR GR    S C L Y 
Sbjct: 301 I-----HYGCPKSLESYYQESGRCGRDGLPSVCWLYYQ 333


>gi|222153538|ref|YP_002562715.1| helicase [Streptococcus uberis 0140J]
 gi|222114351|emb|CAR43072.1| putative helicase [Streptococcus uberis 0140J]
          Length = 447

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 133/316 (42%), Gaps = 33/316 (10%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEF---IKKYTQNTQIIVEII 355
            GSGKT   L+ +   ++   Q   AVI AP   LA Q +E    I  Y++    +   +
Sbjct: 47  TGSGKTHTFLLPIFEKLKENSQDVQAVITAPSRELATQIFEAARQIASYSEEEIRLANYV 106

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQ 410
            G      + + +E++   Q HI++GT     D +Q      +K    +VDE        
Sbjct: 107 GG----TDKLRQIEKLQVSQPHIVVGTPGRIYDLVQSGHLAIHKAATFVVDEADMTMDMG 162

Query: 411 RLKLTQK--ATAP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            L    K  +T P    +L+ +AT IP+ L         + K    P   + IKT  +  
Sbjct: 163 FLDTVDKIASTLPKSVQILVFSAT-IPQKLQPF------LKKYLSNPVMEQ-IKTETVIS 214

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIH 522
           + ID  +   K   +  ++       ++      F +  ER + LH+   S+   +A IH
Sbjct: 215 DTIDNWLLSTKG-RNNNEQILMTLKTMQPYLAMIFVNTKERADELHQFLISNGLKVAKIH 273

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G +   +++ +M+  K    + ++AT +   GID+   S +I +         +H++ GR
Sbjct: 274 GGVPPRERKRIMNQVKKLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GR 332

Query: 583 VGRGEEISSCILLYHP 598
            GR     + I LY P
Sbjct: 333 TGRNGLPGTAITLYQP 348


>gi|206974096|ref|ZP_03235014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217959967|ref|YP_002338523.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|229139159|ref|ZP_04267734.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26]
 gi|206748252|gb|EDZ59641.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217065592|gb|ACJ79842.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|228644218|gb|EEL00475.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26]
          Length = 454

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 138/318 (43%), Gaps = 53/318 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+ +   +   +D  ++ +  +    + T+ 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIE 220

Query: 463 IPINRIDEVIER-----LKVVLSEGKK--AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
               R+ E  +R     L+ V+   +   A   C           R+ V R + L+++  
Sbjct: 221 ---QRVIETTDRAKPDALRFVMDRDQPFLAVIFC-----------RTKV-RASKLYDNLK 265

Query: 516 S---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENA 568
               + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ 
Sbjct: 266 GLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDV 325

Query: 569 EHFGLAQLHQLRGRVGRG 586
           E +    +H++ GR GR 
Sbjct: 326 ESY----IHRI-GRTGRA 338


>gi|120553901|ref|YP_958252.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120323750|gb|ABM18065.1| ATP-dependent RNA helicase DbpA [Marinobacter aquaeolei VT8]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 137/326 (42%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I     GSGKT    I +  A++      Q++++ P   LA Q  + +++  +    + V
Sbjct: 43  IAMAQTGSGKTAAFGIPIIEAIDPRCFRVQSLVLCPTRELADQVAKALRELARAKDNVKV 102

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P   +   +  ++HG AHI++GT     D ++   L L     +++DE  R  
Sbjct: 103 LTLCGGVPIGPQ---IGSLSHG-AHIVVGTPGRVDDHLRKGTLSLDGLKVLVLDEADRML 158

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG-RKPIKTV 461
             G ++ +   ++Q       LL +AT  P    L+        +   KP   R   K  
Sbjct: 159 DMGFEEVVTSIVSQSPGGRQTLLFSATWPPAIRKLSE-------QFQSKPEDVRVESKAA 211

Query: 462 IIPIN------RIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            I I       + D+    +  +LS  +   +   C        +  R   E  + L   
Sbjct: 212 TITIEESFYEIQPDQRAAAVAALLSRFQPVSSLVFC--------TTKRDCDELSDELGRL 263

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             S++++ HG +   +++S +  F N +C +L+AT V   G+D+    ++I  NAE    
Sbjct: 264 GFSALSL-HGDLDQRERDSALVRFANQSCTVLVATDVAARGLDIKGLPLVI--NAEPARD 320

Query: 574 AQLHQLR-GRVGRGEEISSCILLYHP 598
            ++H  R GR GR  E    + L  P
Sbjct: 321 PEVHTHRVGRTGRAGEQGHAVTLCTP 346


>gi|254704764|ref|ZP_05166592.1| excinuclease ABC subunit B [Brucella suis bv. 3 str. 686]
 gi|261755462|ref|ZP_05999171.1| excinuclease ABC subunit B [Brucella suis bv. 3 str. 686]
 gi|261745215|gb|EEY33141.1| excinuclease ABC subunit B [Brucella suis bv. 3 str. 686]
          Length = 940

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 146 KSEGGIPIRME----------TSFEPSGDQPTAIRDLVEGLENQDRT-QVLLGVTGSGKT 194

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                AMA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 195 F----AMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 234


>gi|113868657|ref|YP_727146.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
 gi|113527433|emb|CAJ93778.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
          Length = 646

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 37/292 (12%)

Query: 325 VIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  E   KY +N  +I+   I G MP   +  AL ++      I++ T 
Sbjct: 151 LVLTPTRELALQVTEAAAKYGRNLRRIVCASILGGMPYPKQLAALAKMPD----ILVATP 206

Query: 384 ALFQDSIQYYK-----LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVL 437
               D I   +     L +++ DE  R        L          ++ ATP  R TL+ 
Sbjct: 207 GRLLDHIDAGRIDLSALQMLVFDEADRM-------LDMGFADDIDAIVNATPATRQTLMF 259

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEE- 494
           ++  D  I+++  +   R P + + I   R D+  + +RL        K   +   + + 
Sbjct: 260 SATLDARIAQLASRQL-RDPQR-IEIAAARADQSHIEQRLHFTDDMSHKERLLDHLLRDA 317

Query: 495 --KKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             K+   F +     +SL E  +    S   +HG M+   +   + + + G  ++L+AT 
Sbjct: 318 TLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVATD 377

Query: 550 VIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   GIDV D + ++     + AE +    +H++ GR GR     + I L +
Sbjct: 378 VAARGIDVPDITHVVNFDLPKQAEDY----VHRI-GRTGRAGRSGTAINLVN 424


>gi|329847601|ref|ZP_08262629.1| primosomal protein N [Asticcacaulis biprosthecum C19]
 gi|328842664|gb|EGF92233.1| primosomal protein N [Asticcacaulis biprosthecum C19]
          Length = 736

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 29/235 (12%)

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG---KIAQKILRNIP-----FSPTK 275
           ARER+    +L   +  L +     + +   +  EG   K+A      IP     F+P +
Sbjct: 138 ARERVIETAILPMGLGELALAAGVSEGVVTGLAKEGVLEKVALPFDDRIPQPDPDFAPAR 197

Query: 276 --SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAPIG 331
               +SA   +LQ    K     +L G  GSGKT V L ++A  + A    Q +I+ P  
Sbjct: 198 LNPSQSAAHQLLQMEMAKGFAPVLLDGVTGSGKTEVYLESVADVLRADPAAQVLILLPEI 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSI 390
            L Q     + +      + V     N+  + RR+  E +A G+  +++G   ALF   +
Sbjct: 258 ALTQA---VLGRLKARFGVEVAQWHANIGNSSRRRIWEGVATGKIRLVVGARSALF---L 311

Query: 391 QYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            Y +L L+++DE+H          R+  +       +     V++ +ATP   TL
Sbjct: 312 PYVRLGLIVIDEEHDSSYKQEEGVRYHARDLAVFRARMDGAMVVMASATPSLETL 366


>gi|330829254|ref|YP_004392206.1| DEAD/DEAH box helicase domain-containing protein [Aeromonas veronii
           B565]
 gi|328804390|gb|AEB49589.1| DEAD/DEAH box helicase domain protein [Aeromonas veronii B565]
          Length = 633

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 130/320 (40%), Gaps = 37/320 (11%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + + + +EAG    Q +++AP   LA Q  E  ++Y  +     V  
Sbjct: 51  QAQTGTGKTAAFALPLLSRLEAGNRNTQILVLAPTRELALQVAEACQRYAHHMPDFHVLP 110

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRF 406
           I G      + +AL R     A +++GT     D I+   L        +L   DE  R 
Sbjct: 111 IYGGASYETQTRALRR----GAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRM 166

Query: 407 GVQQRLK--LTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKT- 460
           G    +   + Q  +   V L +AT +P   R +    L      KI  K A    I+  
Sbjct: 167 GFIDDVDWIMEQCPSTRQVALFSAT-MPEQIRRVAQKHLKQPKEIKIASKTATATTIRQR 225

Query: 461 --VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
              +  ++++D +   L+V   E  +A  +  + +   E     +  R ++         
Sbjct: 226 YWQVTGLHKLDAMTRLLEV---ESYEALLVFVRTKNAAEELAGKLAARGHACE------- 275

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG +    +E  +D  + G   +LIAT V+  G+DV   + ++  +  +   + +H+
Sbjct: 276 -ALHGDIPQKLRERTVDKLRQGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHR 334

Query: 579 LRGRVGRGEEISSCILLYHP 598
           + GR GR       IL   P
Sbjct: 335 I-GRTGRAGRKGEAILFVAP 353


>gi|327440903|dbj|BAK17268.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 436

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 145/353 (41%), Gaps = 58/353 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAVEAGGQAVIMAP 329
           PT  Q+  I  +L+  S       I Q   G+GKT   L+ ++      +   QAVI +P
Sbjct: 25  PTPIQKEMIPLVLKGKSA------IGQAHTGTGKTHSFLLPIVERIVEEKQEVQAVITSP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ ++ + +  + T+I  ++  G      +++ ++R+   Q  I++GT    +D 
Sbjct: 79  TRELAQQIFDALNQLVEGTEISTKLFIGG---TDKQRTIDRL-KTQPQIVVGTPGRIKDL 134

Query: 390 IQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAPHV-----LLMTATPIPRTL--VL 437
           ++   L+     +++VDE                 A H+     + + +  IP  L   L
Sbjct: 135 VKENALLVHTAPILVVDEAD-LAFDMGFIEDIDGFASHMPEKLEMFVFSATIPEKLKPFL 193

Query: 438 TSLGD--IDISKITEKPAGRKPIKTVIIPI------NRIDEVIERLKVVLSEGKKAYWIC 489
               D  I I    ++P   + I  V++P+       R+ EVI+ +   L     A   C
Sbjct: 194 KKYMDSPIHIHMNDKRPVA-EGIDFVLVPVRSKARNTRLLEVIKGINPFL-----AVIFC 247

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N R   E   S           IHG +S  D++ +M   ++   + ++AT 
Sbjct: 248 ---------NTRKNAESVASFLAEQGIRAGQIHGDLSPRDRKKMMKQVRDLEFQYIVATD 298

Query: 550 VIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +   GID+   S +    I E+ E F    +H++ GR  R     + I L+ P
Sbjct: 299 LAARGIDIQGISHVINYEIPEDLEFF----IHRV-GRTARAGSKGTAITLFQP 346


>gi|307135861|gb|ADN33729.1| helicase [Cucumis melo subsp. melo]
          Length = 413

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 121/312 (38%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++   L        +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS 196

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++        +   V + +AT  P  L +T        K   KP        V I
Sbjct: 197 RGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR-------KFMNKP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 361

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 362 NYLHRI-GRSGR 372


>gi|297847848|ref|XP_002891805.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337647|gb|EFH68064.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 412

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 124/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 80  IQQAQSGTGKTATFCSGVLQQLDYTLVQCQALVLAPTRELAQQIEKVMRALGDYQGVKVH 139

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D I+ +  +L   DE 
Sbjct: 140 ACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMF--VLDEADEM 193

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++    +   P   V + +AT  P  L +T        K   KP        V
Sbjct: 194 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMSKP--------V 238

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 239 RILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 298

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 299 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQ 358

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 359 PENYLHRI-GRSGR 371


>gi|161619459|ref|YP_001593346.1| excinuclease ABC subunit B [Brucella canis ATCC 23365]
 gi|260565991|ref|ZP_05836461.1| excinuclease ABC subunit B [Brucella suis bv. 4 str. 40]
 gi|161336270|gb|ABX62575.1| excinuclease ABC, B subunit [Brucella canis ATCC 23365]
 gi|260155509|gb|EEW90589.1| excinuclease ABC subunit B [Brucella suis bv. 4 str. 40]
          Length = 940

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 146 KSEGGIPIRME----------TSFEPSGDQPTAIRDLVEGLENQDRT-QVLLGVTGSGKT 194

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                AMA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 195 F----AMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 234


>gi|14594802|emb|CAC43286.1| translation initiation factor eIF-4A1 [Arabidopsis thaliana]
          Length = 369

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 125/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 37  IQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 96

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 97  ACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMF--VLDEADEM 150

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++    +   P   V + +AT  P  L +T        K   KP        V
Sbjct: 151 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMSKP--------V 195

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 196 RILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 255

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 256 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQ 315

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 316 PENYLHRI-GRSGR 328


>gi|327278500|ref|XP_003224000.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Anolis
           carolinensis]
          Length = 1030

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   D++S+++ FK+G CKLL+AT+V   G+DV    ++I  +  +     +H+  
Sbjct: 647 LHGGIDQYDRDSIINDFKSGVCKLLVATSVAARGLDVKHLMLVINYSCPNHYEDYVHRA- 705

Query: 581 GRVGR 585
           GR GR
Sbjct: 706 GRTGR 710


>gi|322373358|ref|ZP_08047894.1| primosomal protein N' [Streptococcus sp. C150]
 gi|321278400|gb|EFX55469.1| primosomal protein N' [Streptococcus sp. C150]
          Length = 798

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 80/400 (20%), Positives = 155/400 (38%), Gaps = 112/400 (28%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   +  G  A+++ P I +  Q    FI ++      +V I+
Sbjct: 285 LLEGVTGSGKTEVYLHLIERTLAMGKTAIVLVPEISLTPQMTNRFISRFGD----LVAIM 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ--DSIQYYKLILVIVDEQH-------- 404
              +    +     ++  GQA +++G   A+F   D+I       +I+DE+H        
Sbjct: 341 HSGLSDGEKFDEWRKVRSGQAKVVVGARSAIFAPLDNIG-----AIIIDEEHEATYKQES 395

Query: 405 --RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP---------- 452
             R+  +    L  K+    ++L +ATP   T      G     ++TE+           
Sbjct: 396 NPRYHARDVALLRAKSHGAILVLGSATPSIETRARAQKGVYHFLELTERANPKAKIPQVE 455

Query: 453 -------AGRKPIKTVIIPINRIDEVIERL----KVVLSEGKKAY--------------- 486
                   GR+       P+  ++++ ERL    +VVL   ++ Y               
Sbjct: 456 VVDFKDFVGRQEASDFTPPL--LEKIRERLARKEQVVLMLNRRGYSSFVMCRDCGYVDDC 513

Query: 487 ----------------------------WICPQIEEKKESNFRSVVER-FNSLHEHFTSS 517
                                        +CP  + ++   + +  ++ ++ L E    +
Sbjct: 514 PNCDISLTLHMDTKTMNCHYCDFQKAIPHVCPNCQSRQIRYYGTGTQKAYDQLTELLPEA 573

Query: 518 IAIIHGRMSDIDK-------ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE- 569
             I   RM D+D        E ++++F +G   +L+ T +I  G+D  + +++ + NA+ 
Sbjct: 574 RVI---RM-DVDTTRKKGAHEKLLEAFGSGKADILLGTQMIAKGLDFPNVTLVGVLNADT 629

Query: 570 -----HFGLAQ-----LHQLRGRVGRGEEISSCILLYHPP 599
                 F  A+     L Q+ GR GR ++    I+  + P
Sbjct: 630 SLNLPDFRSAERTFQLLTQVAGRAGRADKEGEVIIQTYNP 669


>gi|295084402|emb|CBK65925.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens
           XB1A]
          Length = 444

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 140/366 (38%), Gaps = 60/366 (16%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           +I Q  LRN+        + A   + Q   +K+    IL    GSGKTL  L+ +   ++
Sbjct: 6   EIIQSALRNLKIEELNPMQEA--SLEQATGRKDV---ILLSPTGSGKTLAYLLPLLLTLK 60

Query: 320 AGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 Q +I+ P   LA Q     K     T        G  P A  +K+   I     
Sbjct: 61  PNDDSVQVLILVPSRELALQIDSVFK--AMGTSWKTCCCYGGHPIAEEKKS---ILGNHP 115

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLM 426
            IIIGT     D +            LI+   D+   FG    +   +TQ       +L+
Sbjct: 116 AIIIGTPGRITDHLSKGNFNPETIETLIIDEFDKSLEFGFHDEMAEIITQLPGLKKRMLL 175

Query: 427 TATP---IP------RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-NRIDEVIERLK 476
           +AT    IP      RT+ L  L D      +E+   R  +  V+ P  ++ID +   L 
Sbjct: 176 SATDAEEIPEFTGLNRTVKLNFLSDD-----SEEQESRLKLMKVLSPSKDKIDTLYNLLC 230

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            + S     +            N R  V+R + L           HG M   D+E  +  
Sbjct: 231 TLGSSSSIVF-----------CNHRDAVDRVHQLLADKKLLAERFHGGMEQPDRERALYK 279

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQLHQLRGRVGRGEEISS 591
           F+NG+C +LI+T +   G+D+ +   II     H+ L     A  H+  GR  R +   +
Sbjct: 280 FRNGSCHVLISTDLAARGLDIPEVGHII-----HYHLPVNEEAFTHR-NGRTARWDATGT 333

Query: 592 CILLYH 597
             L+ H
Sbjct: 334 SYLILH 339


>gi|170050080|ref|XP_001859201.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167871660|gb|EDS35043.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 600

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 131/334 (39%), Gaps = 62/334 (18%)

Query: 302 VGSGKTLVALIAMAAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI     +         G   ++++P   LA Q +  +K+ + +      +
Sbjct: 153 TGSGKTLAFLIPAVELIYKLQFKPRNGTGVLVISPTRELAMQIFGVLKELSAHHHYTYGL 212

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHRF-- 406
           + G    A R    E+++ G  +II+ T     D ++      +  L  +I+DE  R   
Sbjct: 213 LMGG---ASRHTENEKLSKG-LNIIVATPGRLLDHLKGTPNFLFKNLQCLIIDECDRILE 268

Query: 407 -GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G ++ +K  ++        +L +AT   RT  L                G+  +K+  I
Sbjct: 269 IGFEEDMKQIISILPKKRQTMLFSATQTSRTEEL----------------GKLALKSEPI 312

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEK---------KESNFRSVVERFNSL---- 510
            +   D   E     L +G   Y +CP   EK         K++  + V+  F+S     
Sbjct: 313 YVGVDDNKTEATVSGLEQG---YIVCPS--EKRLLVLFTFLKKNRKKKVMVFFSSCLSVK 367

Query: 511 --HEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             HE F      +  IHG+     + SV   F N    +L+ T V   G+D+     I+ 
Sbjct: 368 FHHELFNYIDLPVNSIHGKQKQAKRTSVFFQFCNAESGILLCTDVAARGLDIPAVDWIVQ 427

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            +  +     +H++ GR  RG+ +    LL   P
Sbjct: 428 YDPPNDTKEYIHRV-GRTARGDNLCGHALLLLRP 460


>gi|224073500|ref|XP_002304104.1| predicted protein [Populus trichocarpa]
 gi|118484805|gb|ABK94270.1| unknown [Populus trichocarpa]
 gi|222841536|gb|EEE79083.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 123/312 (39%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-------YYKL-ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++       Y K+ +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 196

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++        +   V + +AT  P  L +T        K   KP        V I
Sbjct: 197 RGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR-------KFMNKP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDELTLEGIKQFHVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 361

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 362 NYLHRI-GRSGR 372


>gi|22652665|gb|AAN03793.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 309

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 117/253 (46%), Gaps = 36/253 (14%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHI 378
           +A+++ P   LA Q +  ++KY++N  +  +++ G +   PQ  R R+ ++ +      +
Sbjct: 75  RALVLTPTRELAAQVHGSVEKYSKNLPLTSDVVFGGVKVNPQMQRLRRGVDVLVATPGRL 134

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPR 433
           +   +   Q++I++ +L ++++DE  R    G    +K  L +       LL +AT    
Sbjct: 135 LDLAN---QNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLHKNRQDLLFSAT---- 187

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
                   D +I ++  K   + P++  +   N   E +E+   V+ +G+K   +   I 
Sbjct: 188 ------FSD-EIRQLA-KGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKLI- 238

Query: 494 EKKESNFRSVV---------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             K+++++ V+          R     E    S A IHG  S   +   + +FK+G  ++
Sbjct: 239 --KDNDWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRV 296

Query: 545 LIATTVIEVGIDV 557
           L+AT +   G+D+
Sbjct: 297 LVATDIAARGLDI 309


>gi|50365089|ref|YP_053514.1| ATP-dependent RNA helicase [Mesoplasma florum L1]
 gi|50363645|gb|AAT75630.1| ATP-dependent RNA helicase [Mesoplasma florum L1]
          Length = 460

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 138/317 (43%), Gaps = 35/317 (11%)

Query: 302 VGSGKTLVALIAMAAAV-----EAGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEII 355
            G+GKT   L+ +   +     +   QA+I+AP   LA+Q ++ +K +T+N TQ+ V++ 
Sbjct: 53  TGTGKTHAFLLPILNNLRFDQDKKNVQALIIAPTRELAKQIFDNVKPFTKNETQLKVDLF 112

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGT----HALF-QDSIQYYKLILVIVDEQH---RFG 407
            G        K +E +   Q  I +GT      L+ Q+ ++      +I+DE       G
Sbjct: 113 IGG---EDINKQIESLNKRQPTIAVGTPTRIKELYEQNHLKATTSDYIIIDECDMIFDLG 169

Query: 408 VQQRLK-LTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             + +  +  KA     L M +  IP   R  V     +     +TEK    K IK V+I
Sbjct: 170 FIEDVDFVVSKAKQNVNLSMFSATIPEQLRPFVSKYARNAHFIDVTEKNVSSKNIKHVLI 229

Query: 464 PI-NR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520
              NR  D V+  L   ++      ++C        SN +  + ++  L    T  ++  
Sbjct: 230 ETKNRETDLVLSNLLNSINP-----YLCLIF-----SNHKEDIPKYVKLIREITGQNVGE 279

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +    + +++   KN   K ++AT V   G+D++  S +I  +        +H+  
Sbjct: 280 LHGDLQPRTRMNMLKKIKNNEFKFVVATDVAARGVDIIGVSHVISIDLPTDLSYYIHR-S 338

Query: 581 GRVGRGEEISSCILLYH 597
           GR GR +      +L++
Sbjct: 339 GRTGRSKMTGESYVLFN 355


>gi|153824344|ref|ZP_01977011.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           MZO-2]
 gi|254226198|ref|ZP_04919793.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V51]
 gi|125621300|gb|EAZ49639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V51]
 gi|149741898|gb|EDM55927.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           MZO-2]
          Length = 422

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 133/337 (39%), Gaps = 41/337 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQG-DVGSGKTLV-ALIAMAAAVEAGGQ------ 323
           +PT  Q+ AI  +LQ          +L G   G+GKT    L  +   +E   Q      
Sbjct: 28  NPTPIQQQAIPHVLQGKD-------VLAGAQTGTGKTAAFGLPLIQRFIEQPWQRETNSK 80

Query: 324 ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I
Sbjct: 81  EIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHL----RGGVDILI 136

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D      L L     +++DE  R      +   Q+      +L   +P+ +TL
Sbjct: 137 ATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR------VLRRLSPLRQTL 190

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             ++  D  I  +  +   R PI+  + P N   E ++++   + + +K   +   I  K
Sbjct: 191 FFSATFDSKIKAVAYRIM-RDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSK 249

Query: 496 KESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                  F    +  ++L E           I+G  S   ++  +D FK G  + LIAT 
Sbjct: 250 NWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATD 309

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           V   G+D+     ++  +        +H++ GR GR 
Sbjct: 310 VAARGLDIAQLEQVVNYDMPFKAEDYVHRI-GRTGRA 345


>gi|254719792|ref|ZP_05181603.1| primosome assembly protein PriA [Brucella sp. 83/13]
 gi|265984811|ref|ZP_06097546.1| primosome assembly protein PriA [Brucella sp. 83/13]
 gi|264663403|gb|EEZ33664.1| primosome assembly protein PriA [Brucella sp. 83/13]
          Length = 744

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 24/190 (12%)

Query: 239 ALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSP--------------TKSQES-AIK 282
            L   R       G+ + V +G  AQ I   I   P              T SQ+  A  
Sbjct: 160 GLAWTRSGLAHAAGVSLTVVDGLKAQGIFEEIMLPPPAVVAKPDTDYARATLSQDQQAAA 219

Query: 283 DILQDMSQKNRM-LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           ++L D  +     + +L G  GSGKT V   A+A A++AG Q +I+ P   L QQ   F+
Sbjct: 220 EMLSDAVEAGGFSVSLLDGVTGSGKTEVYFEAVAKALDAGRQVLILLPEIALTQQ---FL 276

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIV 400
            ++             ++    R +   ++A G   ++ G   ALF   + + +L L++V
Sbjct: 277 DRFHDRFGAKPAEWHSDLAPRTRERVWRQVAEGTVRVVAGARSALF---LPFKELGLIVV 333

Query: 401 DEQHRFGVQQ 410
           DE+H    +Q
Sbjct: 334 DEEHDPAYKQ 343


>gi|76797823|ref|ZP_00780088.1| competence protein ComFA [Streptococcus agalactiae 18RS21]
 gi|76586837|gb|EAO63330.1| competence protein ComFA [Streptococcus agalactiae 18RS21]
          Length = 429

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 158/368 (42%), Gaps = 66/368 (17%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q    +++L+ +S K  +L  +    G+GKT +   ++A  ++ GG   I +P I +
Sbjct: 93  TPYQNEVSEELLKGISSKENLL--VHAVTGAGKTEMIYHSVAKVIDTGGSVCIASPRIDV 150

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
                 E  K+ + + +  + ++ G  P  ++R  L          I  TH L +    Y
Sbjct: 151 CL----ELYKRLSNDFRCAITLMHGESP-FYQRSPL---------TIATTHQLLKF---Y 193

Query: 393 YKLILVIVDEQHRF----------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           +   L+IVDE   F          GV+Q LK  +  T+  +   + T + R +    L  
Sbjct: 194 HAFDLLIVDEVDAFPYVDNPILYQGVKQALK--ENGTSIFLTATSTTELERKVARKELKK 251

Query: 443 IDISKITEKPAGRKPIKTVIIP----INRIDEVIE------RLKVVLSEGKKAYW----I 488
           + +++       R     ++IP    ++ I + ++      +L  ++++ ++  +     
Sbjct: 252 LHLAR-------RFHANPLVIPEMVWVSGIQKSLQTQKLPPKLYQLINKQRQTRYPLLLF 304

Query: 489 CPQIEEKKESNFRSVVERFNSLHE-HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            P I E +   F  ++ +   + +  F SS            +  ++  F++    +L++
Sbjct: 305 FPHISEGQV--FTEILRQAFPMEKIGFVSS--------KSTSRLKLVQDFRDNKLSILVS 354

Query: 548 TTVIEVGIDVVDASIIIIENAEH-FGLAQLHQLRGRVGRGEEISSCILLY-HPPLSKNSY 605
           TT++E G+      + +I+   H F  + L Q+ GRVGR  E    +L + H   SK+ +
Sbjct: 355 TTILERGVTFPSVDVFVIQANHHLFTKSSLVQISGRVGRALERPEGLLYFLHDGKSKSMH 414

Query: 606 TRLSVLKN 613
             +  +KN
Sbjct: 415 QAIKEIKN 422


>gi|322391023|ref|ZP_08064527.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142253|gb|EFX37727.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           parasanguinis ATCC 903]
          Length = 453

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 131/312 (41%), Gaps = 25/312 (8%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +   +    Q   AVI AP   LA Q Y+  ++   +++  + I+   
Sbjct: 53  TGSGKTHTFLLPIFQTLNEDSQQVEAVITAPSRELATQIYQAARQIASHSEKEIRIVN-Y 111

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLK 413
           +    + + +E++   Q HI+IGT     D      +  +K    +VDE         L 
Sbjct: 112 VGGTDKSRQIEKLQVKQPHIVIGTPGRIYDLVASGDLAIHKAHTFVVDEADMTLDMGFLS 171

Query: 414 LTQK--ATAPHVL--LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
              K  ++ P  L  L+ +  IP+ L         + K    P   + IKT  +  + ID
Sbjct: 172 TVDKIASSLPQQLQFLVFSATIPQKLQPF------LKKYLSNPVMEQ-IKTKTVISDTID 224

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMS 526
             +   K    + ++ Y +   ++      F +   R + LH +  +    +A IHG + 
Sbjct: 225 NWLVSTKG-RDKNEQIYQLTKTLQPYLAMIFVNTKTRADDLHAYLVAQGLKVAKIHGDIP 283

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +++ +M+  KN   + ++AT +   GID+   S +I +         +H++ GR GR 
Sbjct: 284 PRERKRIMNQVKNLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRN 342

Query: 587 EEISSCILLYHP 598
                 I LY P
Sbjct: 343 GLPGVAITLYQP 354


>gi|304392616|ref|ZP_07374556.1| primosomal protein N' [Ahrensia sp. R2A130]
 gi|303295246|gb|EFL89606.1| primosomal protein N' [Ahrensia sp. R2A130]
          Length = 753

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 9/139 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
            + Q+ A   +++ +        ++ G  GSGKT V   A+AAA+ AG Q +++ P I +
Sbjct: 221 NEDQQEAADALVEAVKADEYSTHLIDGITGSGKTEVYFEAIAAALNAGKQVLVLLPEIAL 280

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
            A     F+ ++              +    R K   ++A G   +++G   ALF   + 
Sbjct: 281 TAT----FLDRFEARFGAPPAPWHSGITPRQREKIWRQVAEGTVRVVVGARSALF---LP 333

Query: 392 YYKLILVIVDEQHRFGVQQ 410
           + +L LV+VDE+H    +Q
Sbjct: 334 FAELGLVVVDEEHDQAYKQ 352


>gi|255560725|ref|XP_002521376.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539454|gb|EEF41044.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 413

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 117/291 (40%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-------YYKL-ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++       Y K+ +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 196

Query: 406 FGVQQRL-KLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + Q   A   V + +AT  P  L +T        K   KP        V I
Sbjct: 197 RGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITR-------KFMNKP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K      +K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352


>gi|149173347|ref|ZP_01851977.1| primosomal protein N [Planctomyces maris DSM 8797]
 gi|148847529|gb|EDL61862.1| primosomal protein N [Planctomyces maris DSM 8797]
          Length = 800

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 33/230 (14%)

Query: 206 FNIIHNPRKAKDFEWTS--PARERLAYDELLAGQIALLLMRKQFKKEIGI-PINVEGKIA 262
           F ++  P +A+  E     PA++R  YD L +    L L       E G  P+N   K A
Sbjct: 174 FEVVPVPGEAEQNEIIEKLPAKQRAVYDALKSAARPLTLDELTQAAECGSGPVNSLKKKA 233

Query: 263 -----QK---------------ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
                QK               I +       + Q  A+  IL  +  +     +L G  
Sbjct: 234 VISSHQKRMQYFENDDDVVHAHIQKQDDLKLNRDQRLALDQILTAIRGQQSETFVLHGVT 293

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           GSGKT V + A+   V  G QA+++ P I +  Q    F  ++       V ++  ++  
Sbjct: 294 GSGKTEVYIQAIREVVSYGQQAIVLVPEISLTPQAIQRFRSRFDS-----VAVLHSHLTD 348

Query: 362 AHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQ 410
           + R    + IA G+  +I+G   A+F  +     L L+I+DE+H    +Q
Sbjct: 349 SDRHYHWQNIAAGKVQVIVGARSAVFAPAPH---LGLIIIDEEHETSFKQ 395


>gi|332366381|gb|EGJ44132.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK355]
          Length = 447

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 149/358 (41%), Gaps = 44/358 (12%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAV 318
           Q+ LR++ F   T  QE  I  +L       R L + +   GSGKT   L+ +  M    
Sbjct: 13  QEALRDLNFVEATPVQEKLIPVVLS-----GRDL-VGESKTGSGKTHTFLLPIFQMLDEE 66

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               QAVI AP   LA Q Y+  ++       +I V    G   +A +   LE     Q 
Sbjct: 67  ADSVQAVITAPSRELAAQIYQAARQLASFSEREIRVANYVGGTDKARQIGKLE---SSQP 123

Query: 377 HIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           HI+IGT     D ++      +K    +VDE         L +   AT   +    A  +
Sbjct: 124 HIVIGTPGRIYDLVESGDLAIHKAKTFVVDE-----ADMTLDMGFLATVDKI----AGRL 174

Query: 432 PRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGK---- 483
           P+ L           K+  +P  +K    P+   I     I + IE   ++ ++G+    
Sbjct: 175 PKDLQFLVFSATIPQKL--QPFLKKYLSNPVIEQIKTKTVIADTIENW-LLSTKGRDKNA 231

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           + Y I   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN 
Sbjct: 232 QIYQISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|329667364|gb|AEB93312.1| ATP-dependent DNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 598

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 122/320 (38%), Gaps = 47/320 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK++   I   A V  G   VI   I ++  Q    I    QN  I    +    PQ
Sbjct: 40  TGAGKSMCYQIP--ALVNPGVTLVISPLISLMKDQ----IDSLKQNG-INAAALNSATPQ 92

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQRLK 413
                 L +   G+  ++  T        F+  + +  + LV VDE H   ++G   R  
Sbjct: 93  EEVNPILRQAYEGKIKLLYITPERLAMDYFRYQLNFLDISLVAVDEAHCISQWGHDFRPA 152

Query: 414 LTQK-------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
             Q         + P++L +TAT  P           DI+     PA    I +   P  
Sbjct: 153 YRQIMEGVKSIKSQPNILALTATATPSV-------QKDIADQLNIPAENYVITSFARPN- 204

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-----FRSVVERFNSLHEHFTSS---I 518
                    KVV +      ++   I  KK  N     + S  +    L ++   +    
Sbjct: 205 ------LSFKVVDNPKNTNLYLLDYI--KKHPNQSGIVYASTRKNVEELTDYLAQNGILT 256

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  H  +S+ ++  V D+F+    ++++AT    +GID  +   +I  N+    L   +Q
Sbjct: 257 ASYHAGLSNKERADVQDAFQFDKVQVIVATNAFGMGIDKRNVRFVIHANSTP-NLESYYQ 315

Query: 579 LRGRVGRGEEISSCILLYHP 598
             GR GR  E    IL+YHP
Sbjct: 316 EAGRAGRDGEPCEGILIYHP 335


>gi|317011263|gb|ADU85010.1| primosome assembly protein PriA [Helicobacter pylori SouthAfrica7]
          Length = 619

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 9/119 (7%)

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVE 353
           + +L GD GSGKT + +  +A  +E    A+++ P I +  Q      K + +N    + 
Sbjct: 127 ISLLFGDTGSGKTEIYMHLIAQMLEQKKSALLLVPEIALTPQMQQRLKKVFKEN----LG 182

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           +    + Q  +++ LE++   +  +++GT  ALF   +   +L L+IVDE+H F  + +
Sbjct: 183 LWHSKLSQTQKKQFLEKLYSQEIRLVVGTRSALF---LPLKELGLIIVDEEHDFSYKSQ 238


>gi|309806959|ref|ZP_07700941.1| putative ComF operon protein 1 [Lactobacillus iners LactinV 03V1-b]
 gi|308166579|gb|EFO68776.1| putative ComF operon protein 1 [Lactobacillus iners LactinV 03V1-b]
          Length = 429

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 140/346 (40%), Gaps = 53/346 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q     D+L  +  +N    ++    G+GKT +   A+   ++ G    +  P   +
Sbjct: 91  TDRQAKVSADLLHAL--QNNQDHLVHAVTGAGKTEMLFKAVEYFLQQGKYVALATPRLDV 148

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             + Y  + +   NT+I          + H + A +     +  II  TH L    ++YY
Sbjct: 149 VNELYPRMCRAFANTKI---------GKYHGKMAQD--PDNEPFIICTTHQL----LKYY 193

Query: 394 KLI-LVIVDEQHRFGVQQRLKL---TQKATAP--HVLLMTATPIPRTLVLTSLGDIDISK 447
           +   L+I+DE   F       L    + A  P      +TATP    L     G++  S 
Sbjct: 194 QAFDLIIIDEVDAFPYVNNPMLYYGAKNAIKPTGQTFYLTATPSKDMLTKVKNGEMGYSL 253

Query: 448 ITEKPAG------------RKPIK-TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + ++  G            RK I    + P      +I+ L  +++ GK      P+I E
Sbjct: 254 LQQRFHGGLLAVPEEYLFWRKYISGESLHPF-----LIKVLNEIINSGKPLLVFVPRIAE 308

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                    +  + ++ +   S + I     SD +++  ++ F+N    +L+ TT++E G
Sbjct: 309 ---------LGLYQTILQKKYSQLVIASVHSSDKNRQQKVEQFRNREISILLTTTILERG 359

Query: 555 IDVVDASIIIIENAEH-FGLAQLHQLRGRVGRG--EEISSCILLYH 597
           +      +I+I   +  +  A L Q+ GRVGR   +++   I  YH
Sbjct: 360 VTFPGVQVIVIAADDAIYTTAGLVQIAGRVGRAATDQVGRVIFCYH 405


>gi|296114606|ref|ZP_06833259.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978962|gb|EFG85687.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 593

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 149/351 (42%), Gaps = 51/351 (14%)

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIG 331
           ++  + D++   R L ++    GSGKT+   +AMA  +  G +         AVI+AP  
Sbjct: 25  VQTAVLDVAADGRDL-LVSAQTGSGKTVAFGLAMADTLLGGDERLGPAGAPLAVIIAPTR 83

Query: 332 ILAQQ-HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            LA Q   E    Y      IV  I G      RR+A  R     AHI++GT     D +
Sbjct: 84  ELAMQVTRELTWLYAAAGARIVSCIGG---MDARREA--RALQIGAHIVVGTPGRLCDHL 138

Query: 391 QYYKLIL-----VIVDEQHR-FGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLTSLGDI 443
              +L++     V++DE      +  R +L Q        L+ A P   RTL+ ++    
Sbjct: 139 SRGRLVMTDLRVVVLDEADEMLDLGFRDELEQ--------LLDAMPKTRRTLLFSATIAR 190

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI-----EEKKES 498
           +I+ + ++      ++   +   +    IE  + +L++ ++   I P +     E    +
Sbjct: 191 EIASLAKR-YQHDALRIDTLSGTKQHADIE-YRALLTDARE---IIPSVVNVLRETDSPT 245

Query: 499 NF-----RSVVERFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                  R +V    S L E   SS+A+  G +   ++   +DS + G   + +AT V  
Sbjct: 246 TMVFCATRELVRHLQSALVERGFSSVAL-SGELGQAERTRAIDSLRKGQASVCVATDVAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
            GID+   ++++  +        LH+  GR GR      C+L+   P+S+ 
Sbjct: 305 RGIDIPALALVVHASLPTDPATLLHR-SGRTGRAGRKGVCVLMV--PVSQR 352


>gi|237806840|ref|YP_002891280.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237499101|gb|ACQ91694.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 489

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 13/139 (9%)

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH---- 511
           +P++  + P N   E I++    + +G+K   +C  I   K +N++ V+    + H    
Sbjct: 202 EPVQIDVAPRNTTAETIKQTICPVDKGRKPALLCHLI---KHNNWQQVLVFMRTKHGANK 258

Query: 512 -----EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                E      A IHG  S   +   +  FK+G+ ++L+AT +   GID+     ++  
Sbjct: 259 LVTQLETAGIQAAAIHGNKSQGARTRALSGFKDGSVRVLVATDIAARGIDIAQLPQVVNY 318

Query: 567 NAEHFGLAQLHQLRGRVGR 585
              +     +H++ GR GR
Sbjct: 319 ELPNIAEDYVHRI-GRTGR 336


>gi|204927708|ref|ZP_03218909.1| ATP-dependent rna helicase, dead/deah box family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204323050|gb|EDZ08246.1| ATP-dependent rna helicase, dead/deah box family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 142/326 (43%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF 406
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGAQRDSLQH----APHIIVATPGRLLDHLQKETVSLDALHILVMDEADRM 158

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                L +        V+   A    +TL+ ++     I+ I+    GR   + + I I+
Sbjct: 159 -----LDMGFSDAIDEVIHF-APATRQTLLFSATWPDAIAAIS----GRVQQQPIRIEID 208

Query: 467 RID---------------EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            +D               E I  L+ +LS+ + A  +   +    + + ++V +  N++ 
Sbjct: 209 TVDALPAIEQQFFETSAHEKISLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALNAVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 Q---SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELVVNYELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFC 345


>gi|153836814|ref|ZP_01989481.1| DNA helicase [Vibrio parahaemolyticus AQ3810]
 gi|260364760|ref|ZP_05777347.1| ATP-dependent DNA helicase, RecQ family [Vibrio parahaemolyticus
           K5030]
 gi|260900363|ref|ZP_05908758.1| ATP-dependent DNA helicase, RecQ family [Vibrio parahaemolyticus
           AQ4037]
 gi|308095247|ref|ZP_05904399.2| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus Peru-466]
 gi|149749960|gb|EDM60705.1| DNA helicase [Vibrio parahaemolyticus AQ3810]
 gi|308089352|gb|EFO39047.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus Peru-466]
 gi|308108612|gb|EFO46152.1| ATP-dependent DNA helicase, RecQ family [Vibrio parahaemolyticus
           AQ4037]
 gi|308115341|gb|EFO52881.1| ATP-dependent DNA helicase, RecQ family [Vibrio parahaemolyticus
           K5030]
          Length = 641

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 135/331 (40%), Gaps = 46/331 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            GSGK+L   +    A       ++++P+  L +    F+    Q+  I    I  +  +
Sbjct: 42  TGSGKSLCYQLP---ATMLPNLTLVISPLLALMKDQLSFL----QSKGIAAASIDSSQSR 94

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQR-- 411
              ++ +  + +G+  I++ +     +  F++ I+   + L++VDE H    +G   R  
Sbjct: 95  EEAQRVMVGVKNGEIKILMISVERLKNERFREFIRQVPISLMVVDEAHCISEWGHNFRPD 154

Query: 412 -LKLTQ---KATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
            LKL Q   +   P  LL+TAT  P  +  + +  DI    IT     R  +   +IP  
Sbjct: 155 YLKLPQYQRELNIPQTLLLTATATPAVIEDMKNKFDIASDHITVTGFYRSNLDISVIPCE 214

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
             ++  +   +V +  K    +    ++  E   +S++        H   +    H  M 
Sbjct: 215 ESEKQTQLNTIVAAAPKLPTIVYVTQQQTAEQVAKSLI--------HIGVNAHAYHAGMK 266

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGR 582
              +E +   F  G    ++AT    +G+D  D   +I     HF L +      Q  GR
Sbjct: 267 SEVREQIQQQFMAGQIDCIVATIAFGMGVDKSDIRRVI-----HFDLPKSIENYAQEIGR 321

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            GR  + S CILL        + + L+VL+N
Sbjct: 322 AGRDGQRSECILL-------GNTSGLTVLEN 345


>gi|121719103|ref|XP_001276289.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus clavatus NRRL 1]
 gi|142985525|sp|A1C595|FAL1_ASPCL RecName: Full=ATP-dependent RNA helicase fal1
 gi|119404487|gb|EAW14863.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus clavatus NRRL 1]
          Length = 399

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 147/354 (41%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTAVRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + + ++ +GQ H++ GT     D
Sbjct: 101 PTRELATQIQSVIMALGDYMNVQCHACIGGTNIG---EDIRKLDYGQ-HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT +P      
Sbjct: 157 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT-LP------ 209

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E 
Sbjct: 210 ----YDVLDMTTKFMT-DPVRVLV----------KRDELTL-EGIKQYFIAV---EKEEW 250

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 251 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 308

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 309 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENY----IHRI-GRSGR 357


>gi|88601893|ref|YP_502071.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
           JF-1]
 gi|88187355|gb|ABD40352.1| ATP dependent helicase, Lhr family [Methanospirillum hungatei JF-1]
          Length = 898

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 143/352 (40%), Gaps = 64/352 (18%)

Query: 274 TKSQESAIKDILQDMS-------QKNRMLRILQGD-------VGSGKTLVALI----AMA 315
           T   ++ I D+++D         Q+  + +ILQGD        G+GKT  A+I     M 
Sbjct: 4   THQLDTRILDVIRDRGFSELSEVQQQAIPKILQGDHLLLIAPTGTGKTESAMIPVLSGML 63

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           A    G   + + P+  L +     ++ + QN  +   +  G+  QA RRK   ++ H  
Sbjct: 64  ATEGKGFTTLYITPLRALNRDILRRMEWWCQNLGLTSGVRHGDTSQAERRK---QVLHPP 120

Query: 376 AHIIIG---THALFQD--------SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
             ++       ALF          S++Y     VIVDE H     +R    Q   A   L
Sbjct: 121 DLLVTTPETVQALFMGKRLREHLRSVRY-----VIVDEIHDLAGTKRG--AQLVIALERL 173

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +  A    R  +  ++G+ +  +I    AG +P   V +P+ +  ++    KV ++  K 
Sbjct: 174 VRYAGEFQRIGLSATVGNPE--EIAGFLAGERPCSIVEVPVAKYLDI----KVEITGEKF 227

Query: 485 AYWICPQIEEKKES-------NFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDS 536
              +       K+        N RS  E     H       + + HG +S   +    D 
Sbjct: 228 DSQVNAVRRHTKKGPSTLIFVNTRSTAESLG--HALMRDGDVDVHHGSLSREVRIEAEDR 285

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG----LAQLHQLRGRVG 584
           FK G  K LI T+ +E+GID+       +E+   FG    +++L Q  GR G
Sbjct: 286 FKRGEIKTLICTSSMELGIDIGH-----VEHVIQFGSPREVSRLVQRIGRAG 332


>gi|42519100|ref|NP_965030.1| ATP-dependent DNA helicase RecQ [Lactobacillus johnsonii NCC 533]
 gi|41583387|gb|AAS08996.1| ATP-dependent DNA helicase RecQ [Lactobacillus johnsonii NCC 533]
          Length = 598

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 122/320 (38%), Gaps = 47/320 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK++   I   A V  G   VI   I ++  Q    I    QN  I    +    PQ
Sbjct: 40  TGAGKSMCYQIP--ALVNPGVTLVISPLISLMKDQ----IDSLKQNG-INAAALNSATPQ 92

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQRLK 413
                 L +   G+  ++  T        F+  + +  + LV VDE H   ++G   R  
Sbjct: 93  EEVNPILRQAYEGKIKLLYITPERLAMDYFRYQLNFLDISLVAVDEAHCISQWGHDFRPA 152

Query: 414 LTQK-------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
             Q         + P++L +TAT  P           DI+     PA    I +   P  
Sbjct: 153 YRQIMEGVKSIKSQPNILALTATATPSV-------QKDIADQLNIPAENYVITSFARPN- 204

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-----FRSVVERFNSLHEHFTSS---I 518
                    KVV +      ++   I  KK  N     + S  +    L ++   +    
Sbjct: 205 ------LSFKVVDNPKNTNLYLLDYI--KKHPNQSGIVYASTRKNVEELTDYLAQNGILT 256

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  H  +S+ ++  V D+F+    ++++AT    +GID  +   +I  N+    L   +Q
Sbjct: 257 ASYHAGLSNKERADVQDAFQFDKVQVIVATNAFGMGIDKRNVRFVIHANSTP-NLESYYQ 315

Query: 579 LRGRVGRGEEISSCILLYHP 598
             GR GR  E    IL+YHP
Sbjct: 316 EAGRAGRDGEPCEGILIYHP 335


>gi|226183|prf||1413329A gene vasa
          Length = 660

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 117/277 (42%), Gaps = 34/277 (12%)

Query: 302 VGSGKTLVALIAMAA-------AVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   L+ + +        +E G  Q VI++P   LA Q +   +K+   + + + 
Sbjct: 291 TGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIG 350

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHR--- 405
           I+ G     H+ + + R      H++I T     D      I +     V++DE  R   
Sbjct: 351 IVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD 406

Query: 406 --FGVQQRLKLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK--PIKT 460
             F    R  +T     P H  LM +   P  +   +   + +  +     G +   +K 
Sbjct: 407 MGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKLRFVAIGIVGGRCSDVKQ 466

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            I  +N+     +R K++    ++A      +E K+ ++F   +  F S  E  T+SI  
Sbjct: 467 TIYEVNK---YAKRSKLIEILSEQADGTIVFVETKRGADF---LASFLSEKEFPTTSI-- 518

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             G      +E  +  FKNG+ K+LIAT+V   G+D+
Sbjct: 519 -RGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDI 554


>gi|331217131|ref|XP_003321244.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300234|gb|EFP76825.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 547

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 134/316 (42%), Gaps = 52/316 (16%)

Query: 302 VGSGKTLV----ALIAMAA----AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+     A+I + A    A   G   +I+AP   LA Q      K+  +++I   
Sbjct: 159 TGSGKTIAFSIPAMIHINAQPLLAPGDGPIVLILAPTRELAVQIQGECTKFGASSRIRNT 218

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF-- 406
            + G +P+  + + L R     A I+I T     D ++      +++  +++DE  R   
Sbjct: 219 CVYGGVPKGQQIRDLTR----GAEIVIATPGRLIDMLESRKTNLHRVTYLVMDEADRMLD 274

Query: 407 -GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KITE 450
            G + ++K            L   AT P  +   A+   +  +  ++G +D++    IT+
Sbjct: 275 MGFEPQIKKIVEQIRPDRQTLMFSATWPKEVQRLASEYLKDFIQVNVGSLDLTANINITQ 334

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
                  I  V     +  ++I+ L+ + SE  K                R   +    L
Sbjct: 335 -------IVEVCSDFEKRGKLIKHLEKISSESAKVLIFV--------GTKRVADDLTKYL 379

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            +    S+AI HG     +++ V++ FK+G   ++IAT V   G+DV D + +I  +  +
Sbjct: 380 RQDGWPSLAI-HGDKQQQERDWVLEEFKSGRSPIMIATDVASRGLDVKDIAYVINYDMPN 438

Query: 571 FGLAQLHQLRGRVGRG 586
                +H++ GR GR 
Sbjct: 439 GIEDYIHRI-GRTGRA 453


>gi|302831193|ref|XP_002947162.1| hypothetical protein VOLCADRAFT_103394 [Volvox carteri f.
           nagariensis]
 gi|300267569|gb|EFJ51752.1| hypothetical protein VOLCADRAFT_103394 [Volvox carteri f.
           nagariensis]
          Length = 481

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 114/295 (38%), Gaps = 50/295 (16%)

Query: 303 GSGKTLVALIAMAAAVEA----------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           GSGKTL   + M   + A          G  A++MAP   LA Q  + +++      +  
Sbjct: 110 GSGKTLGFGLPMLRHIAAQRDNGVVSGKGPFAIVMAPTRELALQINQVLEEAGSQCSVRT 169

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             + G +P+  +  AL+        +++GT    +D      +Q  K+   ++DE  R  
Sbjct: 170 VCVYGGVPKGPQVAALKS----GVEVVVGTPGRMEDLLNDGVLQLKKVTYAVLDEADRML 225

Query: 406 -FGVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
             G +             R  L   AT P  +   A       V  ++G  D++    IT
Sbjct: 226 DLGFEPHIRAIMGLTRADRQTLMFSATWPAAVQKLAIAFLSHPVKVTIGSQDLAASHSIT 285

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           ++         VI P  R   ++E L+       +   +   +  KKE+       R   
Sbjct: 286 QR-------VDVIDPNARDGRLLELLQQYHGAKGRKNRVIIFVLYKKEA------PRVEQ 332

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           L          IHG +S   +   +D FK+G   LLIAT V   G+D+ D  ++I
Sbjct: 333 LLSRKGWKAVAIHGDISQQQRTDAVDKFKSGVVPLLIATDVAARGLDIPDVEVVI 387


>gi|298484223|ref|ZP_07002388.1| ATP-dependent RNA helicase [Bacteroides sp. D22]
 gi|298269636|gb|EFI11232.1| ATP-dependent RNA helicase [Bacteroides sp. D22]
          Length = 444

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 142/374 (37%), Gaps = 60/374 (16%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           +I Q  LRN+        + A   + Q   +K+    IL    GSGKTL  L+ +   ++
Sbjct: 6   EIIQSALRNLKIEELNPMQEA--SLEQATGRKDV---ILLSPTGSGKTLAYLLPLLLTLK 60

Query: 320 AGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 Q +I+ P   LA Q     K     T        G  P A  +K+   I     
Sbjct: 61  PNDDSVQVLILVPSRELALQIDSVFK--AMGTSWKTCCCYGGHPIAEEKKS---ILGNHP 115

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLM 426
            IIIGT     D +            LI+   D+   FG    +   +TQ       +L+
Sbjct: 116 AIIIGTPGRITDHLSKGNFNPETIETLIIDEFDKSLEFGFHDEMAEIITQLPGLKKRMLL 175

Query: 427 TATP---IP------RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-NRIDEVIERLK 476
           +AT    IP      RT+ L  L D      +E+   R  +  V+ P  ++ID +   L 
Sbjct: 176 SATDAEEIPEFTGLNRTVKLNFLSDD-----SEEQESRLKLMKVLSPSKDKIDTLYNLLC 230

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            + S     +            N R  V+R + L           HG M   D+E  +  
Sbjct: 231 TLGSSSSIVF-----------CNHRDAVDRVHQLLADKKLLAERFHGGMEQPDRERALYK 279

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQLHQLRGRVGRGEEISS 591
           F+NG+C +LI+T +   G+D+ +   II     H+ L     A  H+  GR  R +   +
Sbjct: 280 FRNGSCHVLISTDLAARGLDIPEVGHII-----HYHLPVNEEAFTHR-NGRTARWDATGT 333

Query: 592 CILLYHPPLSKNSY 605
             L+ H      SY
Sbjct: 334 SYLILHAEEKLPSY 347


>gi|255716462|ref|XP_002554512.1| KLTH0F07106p [Lachancea thermotolerans]
 gi|238935895|emb|CAR24075.1| KLTH0F07106p [Lachancea thermotolerans]
          Length = 525

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 140/353 (39%), Gaps = 30/353 (8%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT    I +   +    Q   A ++AP   LAQQ  E          +    I G 
Sbjct: 151 TGSGKTAAFAIPILNQLWHDQQPYYACVLAPTRELAQQIKETFDSLGGAMGVRTTCIVGG 210

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHRFGVQQRL 412
           M    + + L R    + HIII T     D ++        KL  +++DE  R      L
Sbjct: 211 MNMIDQARDLMR----KPHIIIATPGRLMDHLENTKGFSMRKLKFLVMDEADRL-----L 261

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI-IPINRIDEV 471
            +        +L +  T    T + ++     I K+ ++ +   P+K  +      +D +
Sbjct: 262 DMEFGPVLDRILKIIPTQGRTTYLFSATMTSKIDKL-QRASLTNPVKCAVSTKYQTVDTL 320

Query: 472 IERLKVVLSEGKKAY--WICPQIEEKKESNF---RSVVERFNSLHEHFTSSIAIIHGRMS 526
           I+ L VV    K  +  ++  +   K    F   ++  ER  +L      S   +HG ++
Sbjct: 321 IQTLMVVPGGLKNTFLIYLLNEFLGKTAIVFTRTKANAERIATLCNLLEFSATALHGDLN 380

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL--RGRVG 584
              +   +D FK G   +L+AT V   G+D+    I+I  +      + +H++    R G
Sbjct: 381 QNQRTGALDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAG 440

Query: 585 RGEEISSCILLYHPPL---SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           R  +  S +  Y   L    ++   R    +N + G +++  D   +  GE++
Sbjct: 441 RSGKSISLVSQYDLELILRIEDVLGRKLPKENVDKGVILSLRDTVDKANGEVV 493


>gi|260809351|ref|XP_002599469.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae]
 gi|229284748|gb|EEN55481.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae]
          Length = 623

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 70/342 (20%), Positives = 142/342 (41%), Gaps = 45/342 (13%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G   +++ P   LAQQ  +   K+ ++++I   
Sbjct: 156 TGSGKTLAYMLPAIVHINHQPYLERGDGPICLVLTPTRELAQQVQQEASKFGRSSRIKNT 215

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK-----LILVIVDEQHRFGV 408
            + G  P+  + + LER       + I T     D ++  K        +++DE  R   
Sbjct: 216 CVFGGSPKGPQIRDLER----GVEVCIATPGRLIDFLEAGKTNMRRCTYLVLDEADR--- 268

Query: 409 QQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITE---KPAGRKPIKTVII 463
                +      P +  ++    P  +TL+ ++    ++ ++ E   K   +  I  + +
Sbjct: 269 -----MLDMGFEPQIRKIIEQIRPDRQTLMYSATWPKEVRQLAEEFLKEYTQINIGALQL 323

Query: 464 PIN-RIDEVIERLKVVLSEGKKAYWICPQIEE---KKESN---FRSVVERFNSLHEHFTS 516
             N  I ++++    V+ E +K + +   +EE   +KE+    F     R + L      
Sbjct: 324 SANHNILQIVD----VVQEHEKDHKLSRLLEEIMGEKENKTIIFVETKRRVDDLTRRMRR 379

Query: 517 S---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  IHG  S  +++ V++ F++G   +L+AT V   G+DV D   +I  +  +   
Sbjct: 380 DGWPAMCIHGDKSQPERDWVLNQFRSGKAPILVATDVASRGLDVSDIKFVINFDYPNSAE 439

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
             +H++ GR  R +   +    + P   K +   +SVL+  +
Sbjct: 440 DYVHRI-GRTARSDRTGTAYTFFTPSNLKQTKDLVSVLQEAQ 480


>gi|189460649|ref|ZP_03009434.1| hypothetical protein BACCOP_01291 [Bacteroides coprocola DSM 17136]
 gi|189432608|gb|EDV01593.1| hypothetical protein BACCOP_01291 [Bacteroides coprocola DSM 17136]
          Length = 820

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 22/207 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           G+++ + +   P +P + +Q+ A  +IL    QKN  L  L G   SGKT + +  +  A
Sbjct: 269 GRLSAEQVSVSPLNPLSSAQQQAYSEILTHFHQKNVCL--LHGVTASGKTEIYIHLIQQA 326

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER-IAHGQA 376
           ++AG Q + + P   L  Q  E +K+   N    + I     P A R +   + +     
Sbjct: 327 IQAGKQVLYLLPEIALTTQITERLKRVFGNR---LGIYHSKFPDAERVEIWRKQLTDDDY 383

Query: 377 HIIIGTH-ALFQDSIQYYKLILVIVDEQH-----------RFGVQQRLKLTQKATAPHVL 424
            +I+G   ++F   + + +L LVIVDE+H           R+  +    +         L
Sbjct: 384 DVILGVRSSVF---LPFRRLGLVIVDEEHENTYKQQDPAPRYHARNAAIVLASMFGAKTL 440

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEK 451
           L TATP   T      G     ++TE+
Sbjct: 441 LGTATPCIETYYNAVHGKYGWVQLTER 467


>gi|84995732|ref|XP_952588.1| eukaryotic translation initiation factor 4a [Theileria annulata
           strain Ankara]
 gi|65302749|emb|CAI74856.1| eukaryotic translation initiation factor 4a, putative [Theileria
           annulata]
          Length = 400

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 146/354 (41%), Gaps = 56/354 (15%)

Query: 260 KIAQKILRNIPFS-----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           K+ + +LR I +S     P+  Q+  IK I+++         I Q   G+GKT    IA 
Sbjct: 34  KLNEDLLRGI-YSYGFERPSAIQQRGIKPIIENYDT------IGQAQSGTGKTATFSIAA 86

Query: 315 AAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKAL 368
              +       Q +I+AP   LAQQ  + +       ++      G        H+ KA 
Sbjct: 87  LQIINYDVMSCQILILAPTRELAQQIQKVVLALGDYLKVQCHACVGGTVVRDDVHKLKA- 145

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRF---GVQQRLKLTQKATA 420
                   H+++GT     D I+   L+     L I+DE       G + +++   K   
Sbjct: 146 ------GVHMVVGTPGRVYDMIEKKALLTDKMKLFILDEADEMLSRGFKGQIQDVFKRLP 199

Query: 421 P--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKV 477
           P   V L +AT     L LT+       K    P      K +++  + +  E I++  +
Sbjct: 200 PDIQVALFSATMPNEILELTT-------KFMRSP------KRILVKKDELTLEGIKQFYI 246

Query: 478 VLSEGKKAYWICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
           ++ +  K   +C   E           N R  V+      +    +++ +HG M   +++
Sbjct: 247 LIDKEYKFETLCDLYESVTITQAIIYCNTRRKVDYLTLKMQEKDFTVSSMHGDMGQKERD 306

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            +M  F++G+ ++LI T ++  GIDV   S++I  +        +H++ GR GR
Sbjct: 307 LIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPMSPDNYIHRI-GRSGR 359


>gi|66551115|ref|XP_623285.1| PREDICTED: eukaryotic initiation factor 4A-like isoform 2 [Apis
           mellifera]
          Length = 423

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 128/303 (42%), Gaps = 66/303 (21%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +            
Sbjct: 91  IAQAQSGTGKTATFSISILQQIDTTIKECQALILAPTRELAQQIQKVVIALGDFMHAECH 150

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G     + R+ + ++  G  HI++GT     D I    L        +L   DE   
Sbjct: 151 ACIGG---TNVREDMRKLDQG-VHIVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLS 206

Query: 406 FGVQQRLKLTQKATAPH---VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            G + ++    K   PH   V+L++AT +P  +       +D+SK       R PI+ ++
Sbjct: 207 RGFKDQIHDVFKL-LPHEVQVILLSAT-MPSDV-------LDVSKC----FMRNPIRILV 253

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH----------- 511
                      + + +  EG K ++I     E++E  F ++ + +++L            
Sbjct: 254 -----------KKEELTLEGIKQFFI---YVEREEWKFETLCDLYDTLSITQAVIFCNTR 299

Query: 512 ---EHFTSS-------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              +  T S       ++ +HG M   +++ +M  F+ G+ ++LI T ++  GIDV   S
Sbjct: 300 RKVDWLTESMRTRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVLITTDLLARGIDVQQVS 359

Query: 562 III 564
           ++I
Sbjct: 360 LVI 362


>gi|329729595|gb|EGG65996.1| helicase C-terminal domain protein [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 360

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 157/359 (43%), Gaps = 66/359 (18%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++ F+ ++ Q  A + I++ + ++  +L  L    G+GKT +    +  A   G    I+
Sbjct: 22  HLSFALSEQQSYASEHIVRAIRKRQTIL--LYAVTGAGKTEMMFQGIQYARIQGDNIAIV 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA------HIIIG 381
           +P                    ++VEI +  +  A   + ++ I H Q+      H ++ 
Sbjct: 80  SP-----------------RVDVVVEI-SKRIKDAFLNEDID-ILHQQSRQQFEGHFVVC 120

Query: 382 T-HALFQDSIQYYKLILVIVDEQHRF------GVQQRLKLTQKATAPHVLLMTATPIPRT 434
           T H L++   Q++  I +  DE   F       +QQ LK + K      + MTATP P+ 
Sbjct: 121 TVHQLYRFK-QHFDTIFI--DEVDAFPLSMDKNLQQALKSSSKVEHA-TIYMTATP-PKQ 175

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L    L +I    I + PA R   K++ +P  R  ++           KK   +  +I +
Sbjct: 176 L----LSEIPHENIIKLPA-RFHKKSLPVPKYRYFKL---------NNKKIQKMLYRILQ 221

Query: 495 KKESNFRSVVERFN---------SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            + +N R  +  FN         S+++   + +  +H    D+ +   ++  +NG   ++
Sbjct: 222 DQINNQRYTLVFFNNIETMIKTFSVYKQKITKLTYVHS--EDVFRFEKVEQLRNGHFDVI 279

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI-SSCILLYHPPLSKN 603
             TT++E G  + +  +++I+ A  +    L Q+ GRVGR  E  +  +L +H  +S N
Sbjct: 280 FTTTILERGFTMANLDVVVID-AHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMN 337


>gi|317178629|dbj|BAJ56417.1| primosome assembly protein PriA [Helicobacter pylori F30]
          Length = 619

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 60/113 (53%), Gaps = 9/113 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L GD GSGKT + + ++A  +E    A+++ P I +  Q      + + +N    + + 
Sbjct: 129 LLFGDTGSGKTEIYMHSIAQTLEQKKSALLLVPEIALTPQMQQRLKRVFKEN----LGLW 184

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFG 407
              + Q  +++ LE++   +  +++GT  ALF   +   +L L+IVDE+H F 
Sbjct: 185 HSKLSQTQKKQFLEKLYSQEIKLVVGTRSALF---LPLKELGLIIVDEEHDFS 234


>gi|311106059|ref|YP_003978912.1| ATP-independent RNA helicase DbpA [Achromobacter xylosoxidans A8]
 gi|310760748|gb|ADP16197.1| ATP-independent RNA helicase DbpA [Achromobacter xylosoxidans A8]
          Length = 462

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 143/329 (43%), Gaps = 52/329 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQII-V 352
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + +++  +  QI  V
Sbjct: 45  IAQAKTGSGKTAAFGLGVLQKLDPTRLTPQALLVCPTRELADQVAQELRRLAR--QIANV 102

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
           +I+T     A R +A E +A G  H+++GT    QD ++   L L     +++DE  R  
Sbjct: 103 KILTLCGGAAARPQA-ESLARG-THLVVGTPGRIQDHLERGSLDLSGLNTLVLDEADRM- 159

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEK----PAGRK------ 456
           V         A A H       P  R TL+ ++    +I K++ +    PA  K      
Sbjct: 160 VDMGFYDDIVAIASHC------PTKRQTLLFSATYPDNIRKLSARFLRNPAEVKVEAQHD 213

Query: 457 --PIKTVIIPIN---RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS--VVERFNS 509
              I+ +   I+   R+D V   L     E   A+           +  RS  +VER  +
Sbjct: 214 ASRIEQIFYEIDDKDRLDAVTRLLAHFRPESTLAFC---------NTKIRSHDLVERLQA 264

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
             E  ++    ++G +   +++ ++  F N +C +L+AT V   G+D+ +   +I  +  
Sbjct: 265 --EGISAQA--LNGDLEQRERDEILIQFANRSCAVLVATDVAARGLDIQNLGAVINVDVT 320

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                 +H++ GR GRGE+    + L  P
Sbjct: 321 KDTEVHVHRI-GRSGRGEQKGLALSLCSP 348


>gi|331214536|ref|XP_003319949.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Puccinia
            graminis f. sp. tritici CRL 75-36-700-3]
 gi|309298939|gb|EFP75530.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Puccinia
            graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1329

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 139/334 (41%), Gaps = 60/334 (17%)

Query: 302  VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
             GSGKTL  L+ M   ++         G  A+IM P   LA Q Y+  + + ++  +   
Sbjct: 696  TGSGKTLAFLLPMFRHIKDQRPLDALEGPIAMIMTPTRELATQIYKEGRPFLKSLGLRAA 755

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDS---IQYYKLILVIVDEQHR 405
               G  P       ++R     A +I+ T       L  +S   I   ++  +++DE  R
Sbjct: 756  CAYGGSPLKDNIADMKR----GAEVIVCTPGRMIELLTTNSGRVINMRRVTYLVLDEADR 811

Query: 406  F---GVQ-QRLKLTQK-----------ATAPHVLLMTATPIPRTLVLTSLGD-----IDI 445
                G + Q +K+  +           AT P  +   A  I R  +  ++G       +I
Sbjct: 812  MFDMGFEPQVMKIVNQIRPDRQTVLFSATFPKQMEALARKILRRPLEITVGGRSVVASEI 871

Query: 446  SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
             +I E       ++      NR+ E++ R     SE +   ++  Q  E  ++ FR +++
Sbjct: 872  EQIVE-------VRQDSTKFNRLLEILGRSYNEDSESRSLVFVDRQ--ESADNLFRDLLK 922

Query: 506  R-FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            + +  L          +HG    +D++ V+  FK+G   ++IAT+V   G+DV    ++I
Sbjct: 923  KGYPCLS---------LHGGKEQVDRDQVIADFKSGVTPIVIATSVAARGLDVKQLKLVI 973

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              +A +     +H+  GR GR     +CI    P
Sbjct: 974  NYDAPNHMEDYVHRA-GRTGRAGNKGTCITFIAP 1006


>gi|308069677|ref|YP_003871282.1| Primosomal protein N' (Replication factor Y) [Paenibacillus
           polymyxa E681]
 gi|305858956|gb|ADM70744.1| Primosomal protein N' (Replication factor Y) [Paenibacillus
           polymyxa E681]
          Length = 858

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P   T  Q+S  + I++ +  + +   +L G  GSGKT + L  +   +E   QA+++ P
Sbjct: 300 PLPLTAEQQSVYERIIRQLDTREQGAYLLHGVTGSGKTEIYLQTIQRCIEQNRQAIVLVP 359

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++     ++   ++G      R     +I  G+  + IG   A+F 
Sbjct: 360 EISLTPQMVERFKGRFGDQVAVMHSRLSG----GERYDEWRKIREGRVKVAIGARSAVF- 414

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               + +L L+I+DE+H    +Q
Sbjct: 415 --APFRELGLIIMDEEHETSYKQ 435


>gi|303253309|ref|ZP_07339458.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307248139|ref|ZP_07530167.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302647991|gb|EFL78198.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|306855316|gb|EFM87491.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 602

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 114/281 (40%), Gaps = 55/281 (19%)

Query: 390 IQYYKLILVIVDEQH---RFGVQQRLKLTQ----KATAPHVLLM----TATPIPRTLVL- 437
           I   K+ L+ VDE H   ++G   R + T     + T P+V LM    TA P  R  +L 
Sbjct: 130 ISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFPNVPLMALTATADPTTRHDILQ 189

Query: 438 --------TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                   T LG  D      +P  R  ++    P+ ++ + I +      +GK     C
Sbjct: 190 HLRLTDPHTYLGSFD------RPNIRYTVQEKFKPMEQLAKFISK-----QQGKSGIVYC 238

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N R  VE           S+   H  MS   +E+V ++F+    ++++AT 
Sbjct: 239 ---------NSRKKVEEITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATI 289

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
              +GI+  +   ++     HF L +     +Q  GR GR +  S  +L Y P  +  ++
Sbjct: 290 AFGMGINKSNVRFVV-----HFDLPRSIESYYQETGRAGRDDLPSEAVLFYDP--ADYAW 342

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            +  +L+  E      + D+KQ K   I    +S   + L+
Sbjct: 343 LQKVLLEEPES----EQRDIKQHKLQAIGAFAESQTCRRLV 379


>gi|291165175|gb|ADD81192.1| vasa [Katsuwonus pelamis]
          Length = 643

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 66/334 (19%), Positives = 136/334 (40%), Gaps = 58/334 (17%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+ +   + A G            +A+I+AP   L  Q Y   +K+   T 
Sbjct: 253 TGSGKTAAFLLPILQQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTC 312

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   ++ G +  AH+ + + R      +++ GT     D I   K+ L     +++DE  
Sbjct: 313 VRPVVVYGGVSTAHQIREISR----GCNVVCGTPGRLLDMIGRGKVGLTKLRYLVLDEAD 368

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK------- 451
           R        +      P +  +  +P +P     +TL+ ++    DI ++          
Sbjct: 369 R--------MLDMGFEPDMRRLVGSPGMPSKENRQTLMFSATYPEDIQRLAADFLKTDYL 420

Query: 452 -------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
                        ++   I + +  +  +   ++ + G +   +   +E K++++F   +
Sbjct: 421 FLAVGVVGGACSDVEQTFIQVTKFSKREQLHDLLKTTGMERTMVF--VETKRQADF---I 475

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             F    +  T+SI   HG     ++E  +  F++G C +L+AT+V   G+D+ D   ++
Sbjct: 476 ATFLCQEKVPTTSI---HGDREQREREQALTDFRSGKCPVLVATSVAARGLDIPDVQHVV 532

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             +  +     +H++ GR GR       +  Y P
Sbjct: 533 NFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFYDP 565


>gi|289672165|ref|ZP_06493055.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. syringae
           FF5]
          Length = 644

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 120/278 (43%), Gaps = 39/278 (14%)

Query: 386 FQDSIQYYKLILVIVDEQH---RFGVQQR---LKL---TQKATAPHVLLMTATPIPRTLV 436
           F++ I    + L++VDE H    +G   R   LKL    ++   P  LL+TAT  P+  V
Sbjct: 119 FRNFIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQREFNIPQTLLLTATATPQ--V 176

Query: 437 LTSLGD---IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +T + D   I    +      R  +   + P++  D+   RL   L+E +    I     
Sbjct: 177 ITDMQDKFAIAPEDVITTGFYRANLHLWVKPVSGRDKR-RRLVEWLNERRGQPTIVYVTL 235

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           +K   +  + +E+ N L        +  H  + +  +ES+   F  G    ++AT    +
Sbjct: 236 QKTAEHIAAHLEQ-NGL------PASAYHAGLPNDQRESIQKQFMGGHLNCIVATIAFGM 288

Query: 554 GIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           GID  D     I N  HF L +      Q  GR GR    S C++L     +++S   L+
Sbjct: 289 GIDKSD-----IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVL----ANRDS---LN 336

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           VL+N   G     E + +  E ++LG +  G  +FL+ 
Sbjct: 337 VLENFVYGDTPEREGIARVLE-DLLGARHDGQWEFLLG 373


>gi|221117600|ref|XP_002163251.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Hydra magnipapillata]
          Length = 790

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 128/327 (39%), Gaps = 51/327 (15%)

Query: 302 VGSGKT-------LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT       LV ++A     E  G  A+I AP   L QQ     K++ +   + V 
Sbjct: 322 TGSGKTAAFVWPMLVHIMAQPVLKEGDGPIALICAPTRELCQQINSECKRFGKCYNLRVI 381

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF-- 406
              G   +  + K L++     A I++ T     D I+       ++  ++ DE  R   
Sbjct: 382 ACYGGGSKWEQTKGLQQ----GAEIVVCTPGRLIDLIKAKATNLLRVTYLVFDEADRMFD 437

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + +++       P    LL +AT   +   L      DI           PI+ V+ 
Sbjct: 438 MGFEPQVRSIANNVRPDRQCLLFSATMKKKVEWLCR----DILS--------DPIRIVVG 485

Query: 464 PINRIDE-VIERLKVVLSEGKKAYWICPQIEE-----------KKESNFRSVVERFNSLH 511
            +   +E +++ ++V+ S  +K  W+   I E            K+SN   V     +L 
Sbjct: 486 ELGEANEDIVQAVEVMKSPQQKWNWLLSHIVEFTSGGSVLIFVTKKSNSEEVAA---NLK 542

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E     + +IHG     ++ +V+  FK     +L+AT V   G+D+     +I  +    
Sbjct: 543 EQ-GYELGLIHGDFDQFERNNVLKQFKQKQFLILVATDVAARGLDIPSIKTVINYDVARD 601

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHP 598
                H++ GR GR  E      L  P
Sbjct: 602 ITTHTHRI-GRTGRAGEKGIAYTLITP 627


>gi|146197807|dbj|BAF57619.1| DEAD box polypeptide 19 protein [Dugesia japonica]
          Length = 434

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 146/346 (42%), Gaps = 58/346 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  QE A+  +L++  +      I Q   G+GKT   L+ M + ++      Q + MAP
Sbjct: 71  PSSIQERALPMLLENQPKN----LIAQSQSGTGKTATFLLTMLSKIDVNDPFCQCLCMAP 126

Query: 330 IGILAQQHYE---FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ--AHIIIGTHA 384
              L  Q  E    + K+  N +I   I  G  P          I  GQ  + IIIGT  
Sbjct: 127 TRELVNQIAEVAIIMSKFMNNVKITCAI-KGLSPD---------ILEGQINSQIIIGTPG 176

Query: 385 LFQ-----DSIQYY---KLILVIVDEQ-------HRFGVQQRLKLTQKATAPHVLLMTAT 429
             +     +S  Y+   KL + ++DE            + +R+K ++      +LL +AT
Sbjct: 177 TLKFWTTDNSSLYFNPKKLKVFVLDEADILIETPEFLNIAKRIK-SKVTNNCQILLFSAT 235

Query: 430 PIPRTLVLTSLGDIDISKITEKPA--GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              R +          ++ + KP     K IK   I +   ++   +L  +   G K+  
Sbjct: 236 YDERVMDFAHDFVPQPNEFSIKPQELTLKNIKQFYIQMKSSEDKYPKLIDIY--GMKSMG 293

Query: 488 ICPQIEEKKE--SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            C    E ++     +  +ER      H +S   ++ G +  ++++  +D F+NG  ++L
Sbjct: 294 QCIIFCESRKMACYLQKALER----DSHLSS---LLTGELDVLERQRQIDDFRNGKSRVL 346

Query: 546 IATTVIEVGIDVVDASIII------IENAEHFGLAQLHQLRGRVGR 585
           IAT +   GID+   ++II       ++ +      LH++ GR GR
Sbjct: 347 IATNLCSRGIDIPQVNLIINWDMPKTKDGKPDCETYLHRI-GRSGR 391


>gi|89891288|ref|ZP_01202795.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
 gi|89516600|gb|EAS19260.1| ATP-dependent RNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 644

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 130/292 (44%), Gaps = 41/292 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQ---HYEFIKKYTQNTQIIVEII 355
            G+GKT    + +   ++      QA+I+AP   LAQQ     E + K+     + V + 
Sbjct: 60  TGTGKTAAFGLPLLDLIDVNSREVQALILAPTRELAQQICGQMEQMSKHLGKLNV-VPVF 118

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFG 407
            G    A+    +  I  G A II+ T     D ++  +        ++L   DE    G
Sbjct: 119 GG----ANIMNQIRDIRRG-AQIIVATPGRLMDLMKRREVKLDALKYMVLDEADEMLNMG 173

Query: 408 VQQRLK--LTQKATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            ++ +   L++  T  ++ L +AT     + +V T +   +  +I  K    K I+   I
Sbjct: 174 FKEDIDFILSKSDTGRNIWLFSATMAREIKRIVDTYMVQPEEVRINPKNIVNKNIEHQSI 233

Query: 464 PINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            +   D+ IE L+  L   +  + +  C     + + + ++V ++ N+ + + T ++   
Sbjct: 234 QLKASDK-IEALRRFLDYDEDMFGVVFC-----RTKRDTQNVADQLNN-NGYATEAL--- 283

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           HG MS   +++ M  F+N   KLLIAT V   GIDV D + +I     HF L
Sbjct: 284 HGDMSQAQRDAAMKRFRNKNLKLLIATDVAARGIDVDDITHVI-----HFAL 330


>gi|39940710|ref|XP_359892.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15]
 gi|152032454|sp|A4QU31|FAL1_MAGO7 RecName: Full=ATP-dependent RNA helicase FAL1
 gi|145010887|gb|EDJ95543.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15]
          Length = 401

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 138/341 (40%), Gaps = 57/341 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q  AI  + +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 49  SPSAVQSRAIVQVCKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 102

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + + ++ +GQ HI+ GT     D
Sbjct: 103 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVG---EDIRKLDYGQ-HIVSGTPGRVAD 158

Query: 389 SIQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L      ++++DE       G ++++    +   P   V++++AT     L +T
Sbjct: 159 MIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMT 218

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +       K    P        V I + R +  +E LK      +K  W    + +  ++
Sbjct: 219 T-------KFMTDP--------VRILVKRDELTLEGLKQYFIAIEKEDWKFDTLCDLYDT 263

Query: 499 ----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T
Sbjct: 264 LTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLIST 323

Query: 549 TVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 324 DVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 359


>gi|56696327|ref|YP_166684.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
 gi|56678064|gb|AAV94730.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
          Length = 471

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 153/379 (40%), Gaps = 68/379 (17%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------L 308
           +N+  K+ + I      +PT  Q  AI   L+       +L I Q   G+GKT      +
Sbjct: 7   LNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRD----VLGIAQ--TGTGKTASFTLPM 60

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           + L+A   A     +++++ P   LA Q  E    YT++ ++   ++ G +    +   +
Sbjct: 61  ITLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALI 120

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R       ++I T     D  +  KL+L     ++VDE  R        +      P +
Sbjct: 121 DR----GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADR--------MLDMGFIPDI 168

Query: 424 -LLMTATPIPR-TLVLTSLGDIDISKITE----KPA----GRKPIKT-------VIIPIN 466
             + + TP  R TL  ++    +I +IT      PA     R+   +       V+   +
Sbjct: 169 ERIFSLTPFTRQTLFFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGS 228

Query: 467 RIDEVIERLKVVL-----SEGKK---AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           R D      + VL     +EG+K   A   C         N ++ V+      + +    
Sbjct: 229 RRDREASEKRAVLRALIDAEGEKCTNAIIFC---------NRKTDVDIVAKSLQKYGYDA 279

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A IHG +    +   +D F+ G  +LL+A+ V   G+DV   S +   +        +H+
Sbjct: 280 APIHGDLDQSQRTRTLDGFREGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHR 339

Query: 579 LRGRVGR----GEEISSCI 593
           + GR GR    G+ I+ CI
Sbjct: 340 I-GRTGRAGRDGKAITLCI 357


>gi|307131092|ref|YP_003883108.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306528621|gb|ADM98551.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 139/330 (42%), Gaps = 58/330 (17%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIV 352
           Q   GSGKT    + +   ++AG    Q++++ P   LA Q       + +Y  N +++ 
Sbjct: 46  QAKTGSGKTAAFGLGLLQQLDAGQFNTQSLVLCPTRELADQVANELRRLARYLPNIKVLT 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF- 406
             + G +P + +R +L    H   HII+ T       L ++++    L  +++DE  R  
Sbjct: 106 --LCGGVPFSIQRDSL---IHA-PHIIVATPGRLLDHLKKETVSLDALQTLVLDEADRML 159

Query: 407 --GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             G              QR  L   AT P  +   +  I R  +  ++  +D     E P
Sbjct: 160 DMGFADAIDEVIAHVPAQRQTLLFSATWPDAIAAISHRIQRDPLTIAIDTVD-----ELP 214

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A    I+     ++R  + I+ L+ +LS  + A  +           F +  +   ++++
Sbjct: 215 A----IEQQFYEVSRSGK-IDLLQKLLSREQPASCVV----------FCNTKKDCQAVYD 259

Query: 513 HFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
             T S   +  +HG M   D++  +  F NG+ ++L+AT V   G+D+    ++I  N E
Sbjct: 260 ALTDSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKALEMVI--NYE 317

Query: 570 HFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
                ++H  R GR  R  E    I L  P
Sbjct: 318 LSWDPEVHIHRIGRTARAGESGLAISLCAP 347


>gi|303328313|ref|ZP_07358751.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
 gi|302861643|gb|EFL84579.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
          Length = 593

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 135/316 (42%), Gaps = 38/316 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQ--IIV 352
           + Q   G+GKT    + +   V +G   QA+++ P   LA Q  E + K     +   I+
Sbjct: 44  VGQAQTGTGKTAAFGLPILEKVISGKGVQALVLCPTRELAIQVAEELSKLAARKKGVTIL 103

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
            +  G + +   R     +A G A +++GT     D +Q   L L     V++DE     
Sbjct: 104 PVYGGQLIERQFRA----LAKG-AQVVVGTPGRIIDHLQRGTLRLDEVDVVVLDEADEML 158

Query: 407 --GVQQRLK--LTQKATAPHVLLMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKT 460
             G ++ ++  L +       +L +AT P P R L    L + ++  I  K      I+ 
Sbjct: 159 DMGFREDIEAILERTPDGCQRILFSATMPPPIRELSKRFLREPEMLTIAHKMLTIPAIEQ 218

Query: 461 V---IIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
               + P  ++D +    +V+ S+G +KA   C        S  R V E    L +    
Sbjct: 219 TYYEVRPYQKMDALC---RVLDSQGFRKALVFC--------STKRGVDEVTTHLQQRGYQ 267

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S  + HG ++   ++ VM  F+    ++L+AT V   GIDV D   +I  +  H     +
Sbjct: 268 SDGL-HGDLAQAQRDRVMQRFRTEGLEILVATDVAARGIDVDDVDAVINYDMPHDVEKYV 326

Query: 577 HQLRGRVGRGEEISSC 592
           H++ GR GR   + S 
Sbjct: 327 HRV-GRTGRAGRVGSA 341


>gi|299747858|ref|XP_001837294.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coprinopsis
           cinerea okayama7#130]
 gi|298407711|gb|EAU84911.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coprinopsis
           cinerea okayama7#130]
          Length = 1081

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 1/105 (0%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG    +D++S +  FK G   ++IAT+V   G+DV    ++I  +A +     +H+  
Sbjct: 701 LHGGKDQVDRDSTIADFKAGVVPIVIATSVAARGLDVKQLKLVINYDAPNHMEDYVHRA- 759

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           GR GR     +C+    P   + S      LK +E       EDL
Sbjct: 760 GRTGRAGNKGTCVTFITPEQERYSVDIYRALKASEATIPKELEDL 804


>gi|296877030|ref|ZP_06901072.1| DNA replication factor Y [Streptococcus parasanguinis ATCC 15912]
 gi|296431974|gb|EFH17779.1| DNA replication factor Y [Streptococcus parasanguinis ATCC 15912]
          Length = 794

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 121/275 (44%), Gaps = 34/275 (12%)

Query: 211 NPRKAKDFEWTSPARERLAYDE---LLAGQIALLLMRKQFKKEIGIPINVEGKIA---QK 264
           N  + K+ + ++ A++RLA  E   L  G+  L  + + F +E+      +G +    ++
Sbjct: 180 NQERLKELQPSARAKKRLALKEHLLLEQGEQPLAGLYQNFSREVVAYFIDQGVLEITERE 239

Query: 265 ILRNIPFSPTKSQESAI-------KDILQDMSQ--KNRMLRILQGDVGSGKTLVALIAMA 315
           + R   +   K Q  A+       K +   +SQ  K     +L+G  GSGKT V L  + 
Sbjct: 240 VNRAAAYYEGKEQSQALLLNTEQSKAVETVVSQFGKTSNPFLLEGVTGSGKTEVYLQIIQ 299

Query: 316 AAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             +  G  A+++ P I +  Q    FI ++ Q     V I+   +    +     ++  G
Sbjct: 300 EVLNKGKTAIMLVPEISLTPQMTDRFISRFGQE----VAILHSGLSNGEKYDQWRKVERG 355

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVL 424
           +A +++G  +     ++   +  +I+DE+H          R+  ++   L  +     +L
Sbjct: 356 EARVVVGARSAIFAPLK--NIGAIIIDEEHEASYKQDSNPRYHAREVAVLRAQYNQAVLL 413

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEK--PAGRKP 457
           L +ATP   +    + G  ++ ++T++  PA + P
Sbjct: 414 LGSATPSLESRARATKGVYELIRLTQRANPAAKIP 448


>gi|254470828|ref|ZP_05084231.1| primosomal protein N` (replication factor Y) [Pseudovibrio sp.
           JE062]
 gi|211959970|gb|EEA95167.1| primosomal protein N` (replication factor Y) [Pseudovibrio sp.
           JE062]
          Length = 737

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 87/192 (45%), Gaps = 18/192 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q+ A   + + + +  +   ++ G  GSGKT V   A+A  ++   QA+I+ P   L
Sbjct: 206 TDLQQGAANQLCKAIGKGFKAF-LIDGVTGSGKTEVYFEAVAETLKNNEQALILIPEIAL 264

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
             Q   F+ ++     +        +P   R +    +A+G+  +++G   ALF   + +
Sbjct: 265 TTQ---FLNRFEDRFGVRPAEWHSQVPPKRRARTWRGVANGEVKVVVGARSALF---LPF 318

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKA----------TAPHVLLMTATPIPRTLVLTSLGD 442
           ++L L++VDE+H    +Q  ++   A          +   V+L +ATP   + V   LG 
Sbjct: 319 HRLGLLVVDEEHDTAYKQDDRVPYNARDMAVVRGHISGFPVVLASATPSVESQVNAKLGR 378

Query: 443 IDISKITEKPAG 454
                + E+ +G
Sbjct: 379 YTKIVLPERASG 390


>gi|194336034|ref|YP_002017828.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308511|gb|ACF43211.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 599

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 126/321 (39%), Gaps = 39/321 (12%)

Query: 299 QGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-VEI 354
           Q   G+GKT    + + + ++   A  QA+++AP   LA Q  E  ++Y ++ +   V  
Sbjct: 44  QAQTGTGKTAAFALPILSNIDLEHAEPQALVLAPTRELAIQVAEAFQRYAEHLKGFHVVP 103

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRF 406
           I G      + + L R      HI++GT     D ++   L        +L   DE  R 
Sbjct: 104 IYGGQDYGIQLRMLRR----GVHIVVGTPGRVMDHMRRGSLNLASLKCLVLDEADEMLRM 159

Query: 407 GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           G    ++  L Q      V L +AT  P            I +I +K        T+   
Sbjct: 160 GFIDDVEWILDQTPKGRQVALFSATMPPV-----------IRRIAQKYLHNPAEVTIQTK 208

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------ 518
              +D + +R  +V   G     I  +I E +  +   +  R  ++       +      
Sbjct: 209 TTTVDTIRQRYWIV--GGSHKIDILTRILEVEPFDGMLIFVRTKTMTLELAEKLQARGYG 266

Query: 519 -AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            A ++G M    +E  +D  KNG   ++IAT V   G+DV   S +I  +      + +H
Sbjct: 267 AAALNGDMPQNQRERTVDQLKNGALSIVIATDVAARGLDVERISHVINYDIPSDTESYVH 326

Query: 578 QLRGRVGRGEEISSCILLYHP 598
           ++ GR GR       IL   P
Sbjct: 327 RI-GRTGRAGRAGDAILFVSP 346


>gi|156097370|ref|XP_001614718.1| DNA helicase [Plasmodium vivax SaI-1]
 gi|148803592|gb|EDL44991.1| DNA helicase, putative [Plasmodium vivax]
          Length = 738

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 14/121 (11%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LH 577
           H  +++  ++ + + + NG  K+L+AT    +GID  D S II     HF L +     +
Sbjct: 412 HAGLTNSARKRIQEKWVNGNAKILVATIAFGMGIDRKDVSFII-----HFNLPKSIENYY 466

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLS-VLKNTEDGFLIAEEDLKQRKEGEILGI 636
           Q  GR GR   +S C L Y    SK    +LS +++++     + +  ++++ E EI  +
Sbjct: 467 QESGRSGRNGNVSFCYLYY----SKEDVEKLSYIIRSSYSNLDMQDITMQKKYEKEIYNL 522

Query: 637 K 637
           +
Sbjct: 523 E 523


>gi|84495604|ref|ZP_00994723.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84385097|gb|EAQ00977.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 514

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 149/371 (40%), Gaps = 57/371 (15%)

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
           +G+P ++   +A++ +     SPT  Q + + D L       R      G  GSGKT   
Sbjct: 23  LGVPESLVRVLAERDI----LSPTPIQAATLPDSLAGRDVLGR------GRTGSGKTYAF 72

Query: 311 LIAMAAAVEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           L+ M A + AGG        +A+I+AP   LA Q  E +    Q   I  + + G + Q 
Sbjct: 73  LLPMLARLSAGGTRRQAKRPRALILAPTRELAIQIDEALAPLAQPLGITSKTVFGGVGQG 132

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG-------VQQ 410
            +  A+ R       +++      +D +    +IL      I+DE            V++
Sbjct: 133 PQVNAITR----GVDVVVACPGRLEDLMNQGHVILDAVEITILDEADHMADLGFLPVVKR 188

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT-EKPAGRKPIKTVIIPINRI- 468
            L  T +     +   T      TLV   L     S +T E  + + P+ T+   +  + 
Sbjct: 189 ILDKTPRNGQRMLFSATLDAGVNTLVKRYLN----SPVTHEADSAQSPVSTMSHHVLHVT 244

Query: 469 -DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII--HGR 524
            D  ++ L+ +  + G+K  +   +   KK      +  + N+        I  +  HG 
Sbjct: 245 TDGHLQVLRDLTAAPGRKVVFTRTKHRAKK------IARQLNA------EGIPAVELHGN 292

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +S   +   MD+F  GT   L+AT +   GI V D S++I  +      A LH+  GR  
Sbjct: 293 LSQNARTRTMDAFHAGTAHTLVATDIAARGIHVDDVSLVIHADPPVEHKAYLHR-SGRTA 351

Query: 585 RGEEISSCILL 595
           R     + + L
Sbjct: 352 RAGNSGTVVTL 362


>gi|329891295|ref|ZP_08269638.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
 gi|328846596|gb|EGF96160.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
          Length = 589

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 140/349 (40%), Gaps = 55/349 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM--------AAAVEAGGQA 324
           PT  Q  AI D+++       +L I Q   G+GKT    + +         A      +A
Sbjct: 27  PTPIQAKAIPDVMKGKD----LLGIAQ--TGTGKTAAFALPILHRLAENRVAPRPRTTRA 80

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I++P   LA Q  +  K+Y  +    V +I G +    + +AL++       +++    
Sbjct: 81  LILSPTRELATQIGDSFKQYGAHLGFRVAVIFGGVKYGAQERALQQ----GLDVLVAAPG 136

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLT 438
              D IQ   L L      ++DE  +        L      P   +++  P  R  L  +
Sbjct: 137 RLLDHIQQKTLDLSTCEIFVLDEADQM-------LDLGFIKPIRQIVSRIPAKRQNLFFS 189

Query: 439 SLGDIDISKITEKPAG---RKPIKTVIIPINRIDEVIERLKVVLSEGKK----------- 484
           +    +I K+    AG   + P+K  + P     E I++  + + +GKK           
Sbjct: 190 ATMPSEIGKL----AGELLKDPVKVQVTPQATTVERIKQSVIWVEQGKKRALLTELFSDP 245

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           AY  C    + K        ++  +  E        IHG  S   +E  +++FKNG  ++
Sbjct: 246 AYTRCLVFTKTKHG-----ADKVAAYLEAGGVEAGAIHGNKSQPQRERALEAFKNGKLRV 300

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           L+AT +   GIDV   + ++     +   A +H++ GR  R  +  + I
Sbjct: 301 LVATDIAARGIDVDKVTHVVNFELPYVPEAYVHRI-GRTARAGKDGTAI 348


>gi|319788346|ref|YP_004147821.1| primosomal protein N' [Pseudoxanthomonas suwonensis 11-1]
 gi|317466858|gb|ADV28590.1| primosomal protein N' [Pseudoxanthomonas suwonensis 11-1]
          Length = 741

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 22/175 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P   QE AI   L+  S  + +L  L+G  GSGKT V L A+A  +  G QA+++ P IG
Sbjct: 201 PNPEQEEAIA-TLRAASGFSPVL--LEGVTGSGKTEVYLHAIADCLARGRQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSI 390
           +  Q     + ++     + V  +   +    R +       G+A +I+GT  A+F    
Sbjct: 258 LTPQT----LARFRARLGVPVHALHSGLADGERARVWAAAWRGEARVIVGTRSAVFTPLP 313

Query: 391 QYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           Q     L++VDE+H          R+  +    +  KA    VLL +ATP   TL
Sbjct: 314 QAG---LIVVDEEHDGSYKQQDGIRYHARDFALVRGKALDVPVLLGSATPSLETL 365


>gi|312864925|ref|ZP_07725155.1| primosomal protein N' [Streptococcus downei F0415]
 gi|311099545|gb|EFQ57759.1| primosomal protein N' [Streptococcus downei F0415]
          Length = 794

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 8/135 (5%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q  A+K I+ D+ + NR   +L+G  GSGKT V L  +   ++ G  A+++ P I +  Q
Sbjct: 262 QAQAVKTIVADIGRPNRPY-LLEGITGSGKTEVYLHIIDRVLKLGKTAIVLVPEISLTPQ 320

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
               FI ++ +     V I+   +    +     +I  G A +++G  +     ++   +
Sbjct: 321 MTNRFISRFGEQ----VAIMHSGLSDGEKYDEWRKIKSGHAKVVVGARSAIFAPLE--NI 374

Query: 396 ILVIVDEQHRFGVQQ 410
             +I+DE+H    +Q
Sbjct: 375 GAIIIDEEHEASYKQ 389


>gi|331682838|ref|ZP_08383457.1| ATP-independent RNA helicase DbpA [Escherichia coli H299]
 gi|331080469|gb|EGI51648.1| ATP-independent RNA helicase DbpA [Escherichia coli H299]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 127/326 (38%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRMLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                  K  I  + R+        + L +       C       + + +SV +  N + 
Sbjct: 219 QFYETSSKGKIPLLQRL--------LSLHQPSSCVVFC-----NTKKDCQSVCDALNEVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S    +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 QSALS----LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELVVNFELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|283769549|ref|ZP_06342445.1| DEAD/DEAH box helicase [Bulleidia extructa W1219]
 gi|283103817|gb|EFC05203.1| DEAD/DEAH box helicase [Bulleidia extructa W1219]
          Length = 456

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 129/314 (41%), Gaps = 30/314 (9%)

Query: 301 DVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIIT 356
           + GSGKT   L+ +   ++      QAV+ AP   LA Q YE  K+      +I +  + 
Sbjct: 47  ETGSGKTHAFLVPIFEKIDVSLDQVQAVVTAPTRELAYQIYEMAKEVENYLPKIRISAVV 106

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQD------SIQYYKLILVIVDEQH---RFG 407
           G      R +  ++  H Q H++IGT    +D      S++  K  +++VDE      FG
Sbjct: 107 GG---KERVRDSKKFQHQQPHVVIGTPGRLKDLFLEDHSLRLDKARILVVDEADMTLEFG 163

Query: 408 VQQRLK-LTQKATAPHVLLMTATPIPRTL---VLTSLGDIDISKITEKPAGRKPIKTVII 463
               +  +  +     +L  +AT +P  L   +   +      +I ++ +  K I  V+I
Sbjct: 164 FLADIDAMVSRMEDVQMLSFSAT-LPNQLKPFIKKYMRHPMTVEIGKRQSNNKNIDHVLI 222

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
           P          LK++   G   Y        +KE++     E    L +H    +  +HG
Sbjct: 223 PCYHRSYAETILKIM--PGFNPYVCLIFANSRKEAH-----EISQELRDHGVK-LTELHG 274

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            ++   ++  M        + +IAT +   G+D+ +   +I     +     +H+  GR 
Sbjct: 275 DLNSRQRKQAMKQISQSQYEYVIATDLAARGMDIGEVGFVISCGFPNELEYYIHRA-GRT 333

Query: 584 GRGEEISSCILLYH 597
           GR     +C  LYH
Sbjct: 334 GRAGVQGTCYALYH 347


>gi|254464595|ref|ZP_05078006.1| RNA helicase DeaD [Rhodobacterales bacterium Y4I]
 gi|206685503|gb|EDZ45985.1| RNA helicase DeaD [Rhodobacterales bacterium Y4I]
          Length = 678

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 132/342 (38%), Gaps = 53/342 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV----EAGGQA-----VIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A  +    E+ G+A     +++AP   LA Q  +E    Y +
Sbjct: 35  LVSAQTGSGKTVGFGLALAQDLLGEDESFGEAAAPLALVIAPTRELALQVKHELSWLYRE 94

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILV 398
              +I   + G M     R+AL R     AHI+  T    +D I        Q   ++L 
Sbjct: 95  AGAVIASCV-GGMDMRDERRALAR----GAHIVAATPGRLRDHIARGSIDLSQVRGVVLD 149

Query: 399 IVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
             DE    G ++ L+  L +       LL +AT  P    L      D  +I        
Sbjct: 150 EADEMLDLGFREDLEFILGEAPEDRRTLLFSATVPPAIASLAEAFQRDAMRI-------- 201

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKA------YWICPQIEEKKESNFRSVVERFNSL 510
             KT        D     + V  ++ + A      Y+  P       +N R+ V R  + 
Sbjct: 202 --KTAGETKQHADIEYRLMNVAQADAENAIINVLRYYEAPSA--IVFANTRAAVNRLAAR 257

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             +    +  + G +S  ++   + + ++G  ++ +AT V   GID+    +++     H
Sbjct: 258 LSNRGLPVVTLSGELSQTERSHALQAMRDGRARVCVATDVAARGIDLPGLELVV-----H 312

Query: 571 FGLAQLHQL----RGRVGRGEEISSCILLYHPPLSKNSYTRL 608
             L   H+      GR GR        L+  PP ++    RL
Sbjct: 313 AELPSNHETLLHRSGRTGRAGRKGVSALIA-PPKARAKALRL 353


>gi|294055968|ref|YP_003549626.1| ATP-dependent DNA helicase, RecQ family [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615301|gb|ADE55456.1| ATP-dependent DNA helicase, RecQ family [Coraliomargarita
           akajimensis DSM 45221]
          Length = 709

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           R  VE   +  E F + +   HG MSD ++ +  D F +G   +++AT    +GID  D 
Sbjct: 237 RKSVEAVAAKMEPFAAPLIRYHGGMSDQERSTAQDVFMSGRASVVVATNAFGMGIDRPD- 295

Query: 561 SIIIIENAEHFG-LAQLHQLRGRVGRGEEISSCILLY 596
            I  + + E  G +   +Q  GR GR  + +SC +L+
Sbjct: 296 -IRFVCHYEMPGSVEAYYQEGGRAGRDGKPASCEMLF 331


>gi|167549858|ref|ZP_02343616.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205325031|gb|EDZ12870.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 457

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 137/326 (42%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI------ 399
              + G  P   +R +L+       HII+ T     D +Q   +      ILV+      
Sbjct: 105 T--LCGGQPFGVQRDSLQH----APHIIVATPGRLLDHLQKETVSLDALHILVMDEADRM 158

Query: 400 --------VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                   +DE  RF    R  L   AT P  +   +  + +  +      I+I  +   
Sbjct: 159 LDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPI-----RIEIDTVDAL 213

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           PA  +             E I  L+ +LS+ + A  +   +    + + ++V +  N++ 
Sbjct: 214 PAIEQQFFE-----TSAHEKISLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALNAVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 Q---SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELVVNYELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFC 345


>gi|145974737|gb|ABQ00072.1| PL10A [Fenneropenaeus chinensis]
          Length = 660

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 154/408 (37%), Gaps = 87/408 (21%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEG-------------KIAQK 264
           +W+ P    LA +E+L  ++         F K   IP+   G             K+ + 
Sbjct: 174 DWSQP----LARNEVLEAELFNNTNSGINFDKYDDIPVEATGEDIPTCINTFADIKLTEI 229

Query: 265 ILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           I +NI  +    PT  Q+ A+  IL     K  ++   Q   GSGKT   L+ +   +  
Sbjct: 230 IKQNISMARYDRPTPVQKYALPFILA----KRDLMACAQ--TGSGKTAAFLVPILNQIYE 283

Query: 321 GGQ-----------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
            G                  ++I+AP   LA Q YE  +K++   ++   ++ G      
Sbjct: 284 QGPVQVKNNNPRGRNKQYPLSLILAPTRELATQIYEEARKFSYRARVRPCVVYGGADVVS 343

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ------ 409
           + + L R      H+++ T     D I   K+ L     +++DE  R    G +      
Sbjct: 344 QMRDLSR----GCHLLVATPGRLADMIDRGKIGLDYCKYLVLDEADRMLDMGFEPQIRRI 399

Query: 410 ----------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS--KITEK-----P 452
                     QR  L   AT P  +   A       +  ++G +  +   IT+K      
Sbjct: 400 VEEDNMPPTGQRQTLMFSATFPKEIQRLAQDFLDNYIFLAVGRVGSTSENITQKIVWVSE 459

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             ++     I+    +D   E  K    + K A  + P+ EE     F    +  ++L E
Sbjct: 460 DDKRSFLLDILNAAGLDRATEANK----DEKMAMGVPPRREESLTLVFVETKKGADALEE 515

Query: 513 HFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                   +  IHG  S  ++E  +  F++G C +L+AT V   G+D+
Sbjct: 516 FLYRHGYPVTSIHGDRSQREREDALRVFRSGQCPILVATAVAARGLDI 563


>gi|169860811|ref|XP_001837040.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130]
 gi|116501762|gb|EAU84657.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130]
          Length = 396

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 147/340 (43%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AI  I+Q          I Q   G+GKT    I++  +++      QA++++P
Sbjct: 46  PSAIQQRAILPIIQGRDV------IAQAQSGTGKTATFSISILQSIDVTVRETQALVLSP 99

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q    I        +      G        + LE   +GQ H++ GT     D 
Sbjct: 100 TRELATQIQSVILALGDYMNVQCHACIGGTSIGEDIRKLE---YGQ-HVVSGTPGRVFDM 155

Query: 389 ----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
               S++   + ++++DE       G + ++    +   P   V+L++AT +P       
Sbjct: 156 IRRRSLRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLPPATQVVLLSAT-LP------- 207

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW----ICPQIEEK 495
               D+ ++T K     PI+   I + R +  +E +K      +K  W    +C   +  
Sbjct: 208 ---YDVLEMTTKFM-TDPIR---ILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTL 260

Query: 496 KESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +    F +   + + L E   +S   ++ +HG M   +++++M  F++GT ++LI T 
Sbjct: 261 TITQAVIFCNTRRKVDWLTEKMRASNFTVSSMHGEMVQKERDAIMAEFRSGTSRVLITTD 320

Query: 550 VIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
           V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 321 VWARGIDVQQVSLVINYDLPANRENY----IHRI-GRSGR 355


>gi|71280589|ref|YP_270076.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71146329|gb|AAZ26802.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 432

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 162/370 (43%), Gaps = 56/370 (15%)

Query: 297 ILQGDVGSGKT----LVALIAMAAAVEAGGQ--------AVIMAPIGILAQQHYEFIKKY 344
           I   + GSGKT    L  L  +   + +G +         +++ P   LA+Q  + IK Y
Sbjct: 49  IAGANTGSGKTATFALPMLQKLREDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSY 108

Query: 345 TQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLIL 397
               N +I    + G +    +  AL     G   I++ T     D     +I+  K+  
Sbjct: 109 AVHFNGEIKTLAVFGGVSVNIQMLAL----RGGVDILVATPGRLLDLISSNAIKLDKVKT 164

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRK 456
           +++DE  R      L  T++ TA    L+  TP  + TL+ ++     ++ +T++     
Sbjct: 165 LVLDEADRM---LSLGFTEELTA----LLALTPKKKQTLLFSATFPEQVTTLTQELL-NN 216

Query: 457 PIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH--E 512
           PI+   I +   D   +++R+  V ++G+K   +   I++++   +R  +   N+ H  E
Sbjct: 217 PIE---IQLQSADASTLVQRVFTV-NKGEKTAVLAHLIQQEQ---WRQALIFVNAKHHCE 269

Query: 513 HFTSSIA-------IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           H    +A       + HG     ++  V+D FK G  ++LIAT +   G+D+    ++I 
Sbjct: 270 HLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGDIEVLIATDIAARGLDIEKLPVVIN 329

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            N        +H++ GR GR  E+   I L    +    Y   SV++  ++ F +  E +
Sbjct: 330 FNLPRSPSDYMHRI-GRSGRAGEVGLAISL----IDHEDYHHFSVIEK-KNKFRLKREQV 383

Query: 626 KQRKEGEILG 635
           +  +  EI G
Sbjct: 384 EGFEAAEITG 393


>gi|71030100|ref|XP_764692.1| RNA helicase-1 [Theileria parva strain Muguga]
 gi|68351648|gb|EAN32409.1| RNA helicase-1, putative [Theileria parva]
          Length = 400

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 146/354 (41%), Gaps = 56/354 (15%)

Query: 260 KIAQKILRNIPFS-----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           K+ + +LR I +S     P+  Q+  IK I+++         I Q   G+GKT    IA 
Sbjct: 34  KLNEDLLRGI-YSYGFERPSAIQQRGIKPIIENYDT------IGQAQSGTGKTATFSIAA 86

Query: 315 AAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKAL 368
              +       Q +I+AP   LAQQ  + +       ++      G        H+ KA 
Sbjct: 87  LQIINYDVMSCQILILAPTRELAQQIQKVVLALGDYLKVQCHACVGGTVVRDDVHKLKA- 145

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRF---GVQQRLKLTQKATA 420
                   H+++GT     D I+   L+     L I+DE       G + +++   K   
Sbjct: 146 ------GVHMVVGTPGRVYDMIEKKALLTDKMKLFILDEADEMLSRGFKGQIQDVFKRLP 199

Query: 421 P--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKV 477
           P   V L +AT     L LT+       K    P      K +++  + +  E I++  +
Sbjct: 200 PDIQVALFSATMPNEILELTT-------KFMRSP------KRILVKKDELTLEGIKQFYI 246

Query: 478 VLSEGKKAYWICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
           ++ +  K   +C   E           N R  V+      +    +++ +HG M   +++
Sbjct: 247 LIDKEYKFETLCDLYESVTITQAIIYCNTRRKVDYLTLKMQEKDFTVSSMHGDMGQKERD 306

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            +M  F++G+ ++LI T ++  GIDV   S++I  +        +H++ GR GR
Sbjct: 307 LIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPMSPDNYIHRI-GRSGR 359


>gi|328474347|gb|EGF45152.1| putative ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus
           10329]
          Length = 641

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 135/331 (40%), Gaps = 46/331 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            GSGK+L   +    A       ++++P+  L +    F+    Q+  I    I  +  +
Sbjct: 42  TGSGKSLCYQLP---ATMLPNLTLVISPLLALMKDQLSFL----QSKGIAAASIDSSQSR 94

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQR-- 411
              ++ +  + +G+  I++ +     +  F++ I+   + L++VDE H    +G   R  
Sbjct: 95  EEAQRVMVGVKNGEIKILMISVERLKNERFREFIRQVPISLMVVDEAHCISEWGHNFRPD 154

Query: 412 -LKLTQ---KATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
            LKL Q   +   P  LL+TAT  P  +  + +  DI    IT     R  +   +IP  
Sbjct: 155 YLKLPQYQRELNIPQTLLLTATATPAVIEDMKNKFDIASDHITVTGFYRSNLDISVIPCE 214

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
             ++  +   +V +  K    +    ++  E   +S++        H   +    H  M 
Sbjct: 215 ESEKQTQLNTIVAAAPKLPTIVYVTQQQTAEQVAKSLI--------HIGVNAHAYHAGMK 266

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGR 582
              +E +   F  G    ++AT    +G+D  D   +I     HF L +      Q  GR
Sbjct: 267 SEVREQIQQQFMAGQIDCIVATIAFGMGVDKSDIRRVI-----HFDLPKSIENYAQEIGR 321

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            GR  + S CILL        + + L+VL+N
Sbjct: 322 AGRDGQRSECILL-------GNTSGLTVLEN 345


>gi|327298075|ref|XP_003233731.1| DEAD/DEAH box helicase [Trichophyton rubrum CBS 118892]
 gi|326463909|gb|EGD89362.1| DEAD/DEAH box helicase [Trichophyton rubrum CBS 118892]
          Length = 1135

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 75/361 (20%), Positives = 138/361 (38%), Gaps = 48/361 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ----I 350
           I+     SGK+L+  + M   +E  A  + + + P   LAQ     +    Q  +    I
Sbjct: 349 IVSTSTSSGKSLIYQVPMLHELEKDAHSRGIYIFPTKALAQDQRRSMLDMLQYMEGLEHI 408

Query: 351 IVEIITGNMPQAHRRKALE--RIAHGQAHI----IIGTHALFQDSIQYYKLILVIVDEQH 404
           +VE   G+ P A R    E  R+      I    I+   +L++  ++  K   V+VDE H
Sbjct: 409 MVETFDGDTPMASRNAIREEARVIFTNPDILHVTILPNESLWRKFLKNLKY--VVVDELH 466

Query: 405 RFG---------VQQRLKLTQKATAPH------VLLMTATPIPRTLVLTSLGDIDISKIT 449
            +          + +RL+    +               A P      +  + ++ ++ I 
Sbjct: 467 VYNGLFGTHVSLIMRRLRRICASIGNSDVKFISCSATVANPEEHMKAIFGIDEVKLTDID 526

Query: 450 EKPAGRKPIKTVIIPI-----------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
             P+GRK       P            + IDE  +    ++  G +    C +I ++ E 
Sbjct: 527 GSPSGRKEFLCWQTPYKDPNDASSGRGSSIDESAKIFCQLILRGVRVIAFC-RIRKQCEY 585

Query: 499 NFRSVVERFNSLHEHFTSSIAIIH-GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +V + F +L+    S   + + G  S  D+  +      G    ++AT  +E+G+D+
Sbjct: 586 LLNAVKDEFRTLNRSDVSRFVMGYRGGYSPQDRRKIEREMFEGKLLGIVATNALELGVDI 645

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
                +I     H  ++   Q  GR GR  + S  IL+    ++   Y     + N +D 
Sbjct: 646 GTLDAVITHEFPH-SISNFRQQSGRAGRRNKDSLSILVAGQSVADQHY-----MNNPDDL 699

Query: 618 F 618
           F
Sbjct: 700 F 700


>gi|254567599|ref|XP_002490910.1| Putative ATP-dependent RNA helicase of the DEAD-box family involved
           in ribosomal biogenesis [Pichia pastoris GS115]
 gi|238030707|emb|CAY68630.1| Putative ATP-dependent RNA helicase of the DEAD-box family involved
           in ribosomal biogenesis [Pichia pastoris GS115]
 gi|328352552|emb|CCA38951.1| hypothetical protein PP7435_Chr2-1277 [Pichia pastoris CBS 7435]
          Length = 498

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 124/289 (42%), Gaps = 41/289 (14%)

Query: 300 GDVGSGKTLVALIAMAAAV----EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            + GSGKT    +   + V      G Q ++++P   LA Q Y+ +K+ T    +    I
Sbjct: 136 AETGSGKTFAFGVPAISHVLQKNSKGLQVLVISPTRELAVQIYDNLKQLTDLCGLECCCI 195

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---G 407
            G + +  +R+ ++     Q+  +I T     D     SI    +  +++DE  R    G
Sbjct: 196 YGGVSKDDQRRQVK-----QSQCVIATPGRLLDLMEEGSIDLTGINYLVLDEADRMLEKG 250

Query: 408 VQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            ++ +K            L   AT P  +   A+   ++ V  ++GD D      + +  
Sbjct: 251 FEEAIKSIMANVNTDRQTLMFTATWPKEVRELASHFMKSPVKVTVGDRD------ELSAN 304

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           K I  ++  I+  D+  + L+++    K    I      KKE+   + VER  +   +  
Sbjct: 305 KKITQIVEVIDPYDKEKKLLQLLSKYSKNDDKILIFALYKKEA---TRVERTLNYKGY-- 359

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             ++ IHG +S   +   ++ FK G   LL+AT V   G+D+ +  ++I
Sbjct: 360 -KVSAIHGDLSQQQRTQSLNDFKTGKSSLLLATDVAARGLDIPNVKVVI 407


>gi|159463584|ref|XP_001690022.1| DEAD-box RNA helicase [Chlamydomonas reinhardtii]
 gi|158284010|gb|EDP09760.1| DEAD-box RNA helicase [Chlamydomonas reinhardtii]
          Length = 513

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 127/309 (41%), Gaps = 39/309 (12%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL  L+     + A        G   +++AP   LA Q  +  +++  +++I  
Sbjct: 154 ETGSGKTLAYLLPAVVHINAQPYLQSGDGPIVLVLAPTRELAVQIQQECQRFGASSRIKN 213

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHR-- 405
            ++ G  P+  + + L     G   I+I T     D +        ++  +++DE  R  
Sbjct: 214 TVVYGGAPKGPQARDL----RGGVEIVIATPGRLIDMLDSRITNLRRVTYLVLDEADRML 269

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
              F  Q R  + Q       LL +AT  P+ +   +    D  K   +     P     
Sbjct: 270 DMGFEPQIRKIVDQIRPDRQTLLWSAT-WPKEVQAIAR---DFLKDPYQVIIGSPDLKAN 325

Query: 463 IPINRIDEVIE------RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             I ++ E++E      RL+ +L        I   +E K     R   E    L      
Sbjct: 326 HNIRQVVEMVEGFAKYPRLRKLLDGEMDGRRILIFVETK-----RGCDELVRQLRTDGYP 380

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++ + HG  S  +++ V+  FKNGT  +++AT V   G+DV D  +++  +        +
Sbjct: 381 ALGL-HGDKSQQERDWVLQEFKNGTHPIMLATDVAARGLDVKDIKVVVNYDMPKTAEDYV 439

Query: 577 HQLRGRVGR 585
           H++ GR GR
Sbjct: 440 HRI-GRTGR 447


>gi|149277978|ref|ZP_01884117.1| primosomal protein N' [Pedobacter sp. BAL39]
 gi|149231176|gb|EDM36556.1| primosomal protein N' [Pedobacter sp. BAL39]
          Length = 821

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 15/145 (10%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F+ +++Q+ A ++I     +K+ +L  L G   SGKT + +  +  A+E GGQ + + P 
Sbjct: 284 FTLSEAQQKAFEEIGTSFEEKDVVL--LHGVTASGKTQIYIKLIEQAIEKGGQVLFLLPE 341

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL----F 386
             L  Q  + I++Y  +    + +         R +   ++ +G+  +++G  +     F
Sbjct: 342 IALTTQIVDRIQRYFGDA---IGVYHSKFNNNERVEIWNKVLNGKYRVVLGARSAVFLPF 398

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQR 411
           QD      L L++VDE+H    +Q+
Sbjct: 399 QD------LKLIVVDEEHEPSYKQQ 417


>gi|66805957|ref|XP_636700.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
 gi|74896924|sp|Q54IV3|DDX42_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx42; AltName:
           Full=DEAD box protein 42
 gi|60465098|gb|EAL63199.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
          Length = 986

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 136/346 (39%), Gaps = 58/346 (16%)

Query: 302 VGSGKTL------VALIAMAAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT       ++ I     +E G    A+ +AP   LA Q Y    KY++  ++   
Sbjct: 351 TGSGKTATFIWPSISHIMDQPYLEKGDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTT 410

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHR 405
           ++ G + +  + K L+        II+ T     D I+           L+L   D+   
Sbjct: 411 VLYGGVSKQQQCKELK----AGCEIIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFD 466

Query: 406 FGVQQRLKLTQKATAP--HVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           FG   ++        P    LL +AT  P       T L D              PIK  
Sbjct: 467 FGFGPQVLSIVNHVRPDRQTLLFSATFKPNVEEFARTILSD--------------PIKIS 512

Query: 462 IIPINRID-EVIERLKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEH 513
           I  I   + ++ + ++V+ S+  K  W+  Q+             + +  VE+ +S    
Sbjct: 513 IGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLSQGSVLIFVSTKVAVEQLSSNLTK 572

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F      +HG  + I++   + +FK G   +LIAT V   G+D     I +I+N  ++  
Sbjct: 573 FGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDVAARGLD-----IPLIKNVVNYDT 627

Query: 574 A---QLHQLR-GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +   + H  R GR GR         L  P   K+ +  + ++KN E
Sbjct: 628 SRDIESHTHRIGRTGRAGNTGVAYTLITP---KDIHFSVDLIKNLE 670


>gi|312066551|ref|XP_003136324.1| RNA helicase [Loa loa]
 gi|307768519|gb|EFO27753.1| RNA helicase [Loa loa]
          Length = 952

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 133/316 (42%), Gaps = 53/316 (16%)

Query: 302 VGSGKTLVALIAMAAAV-------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+ M   +       E  G  AVIM+P   LA Q ++   K+ +   I V 
Sbjct: 338 TGSGKTLAFLLPMFRHILDQPELEEMDGPIAVIMSPTRELAMQTWKEANKFAKQLDIRVA 397

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHR 405
            + G +  + +   L+R     A +++ T     D +   K        +  +++DE  R
Sbjct: 398 CVYGGVGISDQIGDLKR----GAEVVVCTVGRLTDMLAANKGKVTNLRRVTYLVLDEADR 453

Query: 406 F---GVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
               G + Q +K+          ++ +   PR +   +   +D           KPI+ +
Sbjct: 454 MFDMGFEPQVMKIVNNIRPDRQTVLFSATFPRQMEALARKILD-----------KPIEIM 502

Query: 462 IIPINRIDEVIERLKVVLSEGKK---------AYWICPQI---EEKKESNFRSVVERFNS 509
           +   + + + + +  V+L E +K          YW    +    +K+E     V +   S
Sbjct: 503 VGGKSVVCDDVNQNVVILEEHQKMLKLLELLGVYWENGNVLVFVDKQEKADDLVTQLMRS 562

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            +     + A +HG +   D++S +  +K G  KLL+AT+V   G+D+    +++  +  
Sbjct: 563 GY-----NCAPLHGGIDQFDRDSTILDYKAGKIKLLVATSVAARGLDIKKLILVVNYDCP 617

Query: 570 HFGLAQLHQLRGRVGR 585
           +     +H++ GR GR
Sbjct: 618 NHYEDYVHRV-GRTGR 632


>gi|306839489|ref|ZP_07472297.1| primosomal protein N'' [Brucella sp. NF 2653]
 gi|306405434|gb|EFM61705.1| primosomal protein N'' [Brucella sp. NF 2653]
          Length = 733

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 24/190 (12%)

Query: 239 ALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSP--------------TKSQES-AIK 282
            L   R       G+ + V +G  AQ I   I   P              T SQ+  A  
Sbjct: 149 GLAWTRSGLAHAAGVSLTVVDGLKAQGIFEEIMLPPPAVVAKPDTDYARATLSQDQQAAA 208

Query: 283 DILQDMSQKNRM-LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           ++L D  +     + +L G  GSGKT V   A+A A++AG Q +I+ P   L QQ   F+
Sbjct: 209 EMLSDAVEAGGFSVSLLDGVTGSGKTEVYFEAVAKALDAGRQVLILLPEIALTQQ---FL 265

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIV 400
            ++             ++    R +   ++A G   ++ G   ALF   + + +L L++V
Sbjct: 266 DRFHDRFGAKPAEWHSDLAPRTRERVWRQVAEGTVRVVAGARSALF---LPFKELGLIVV 322

Query: 401 DEQHRFGVQQ 410
           DE+H    +Q
Sbjct: 323 DEEHDPAYKQ 332


>gi|303231880|ref|ZP_07318591.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513487|gb|EFL55518.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 523

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 143/343 (41%), Gaps = 43/343 (12%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           + L ++ F  PT  Q+ AI      MS K+    I Q   G+GKT    + +   V+   
Sbjct: 16  RALNDMGFEEPTPIQQEAIPVA---MSGKDM---IGQAQTGTGKTAAFGLPVLERVDGSN 69

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q VI++P   LA Q  E + K  Q T I    I G      + +AL++       II
Sbjct: 70  RHVQVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKK----NPQII 125

Query: 380 IGTHALFQD-----SIQYYKLILVIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATP 430
           + T     D     SI++  + +V++DE         V    K+       H  L+ +  
Sbjct: 126 VATPGRLMDHMDRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLFSAT 185

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC- 489
           +P+T+      ++  + +TE      P    + P     ++IE+  + + + +K   +C 
Sbjct: 186 MPKTI-----RELAETYLTE------PTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCR 234

Query: 490 ------PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
                 P++        R V E   +L +    +  I HG +S   ++SV+  F+ GT  
Sbjct: 235 LFDLQAPELAIIFTRTKRRVDEVTEALKKRGYMAEGI-HGDLSQQKRDSVIRQFREGTID 293

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           +L+AT V   G+D+   S +   +      +  H++ GR GR 
Sbjct: 294 ILVATDVAARGLDISGVSHVYNYDLPQDPESYTHRV-GRTGRA 335


>gi|294626035|ref|ZP_06704645.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599705|gb|EFF43832.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 458

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 122/289 (42%), Gaps = 38/289 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + +++      N ++
Sbjct: 43  IAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQVGKQLRRLATGIPNMKL 102

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +V  +TG MP   +  +LE  AH    +++GT    Q+  +   L L     +++DE  R
Sbjct: 103 VV--LTGGMPLGPQLASLE--AH-DPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADR 157

Query: 406 F---GVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
               G ++ ++        H   LL +AT  P           D  +   +   ++P++ 
Sbjct: 158 MLDMGFEEPIREIASRCDKHRQSLLFSAT-FP-----------DSIRALARELLKEPVEI 205

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFT 515
            +   +   E+ ++   V    ++       +    ES     N R  V+      + F 
Sbjct: 206 TVEGADSAPEIDQQFFEVDPTYRQKAVAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFG 265

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            S   +HG M   D++ V+  F N +C +L+A+ V   G+DV D S ++
Sbjct: 266 FSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVV 314


>gi|229155721|ref|ZP_04283827.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
           4342]
 gi|228627707|gb|EEK84428.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
           4342]
          Length = 389

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 148/346 (42%), Gaps = 48/346 (13%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           T+ Q+ AI  IL  QD+        I +   G+GKTL  L+ +   +       Q V++A
Sbjct: 22  TEIQKQAIPTILEGQDV--------IAESPTGTGKTLAYLLPLLHKINPEVKQPQVVVLA 73

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L  Q +E ++K+T  T+I    + G    A  ++ +E++      +I+G+     +
Sbjct: 74  PTRELVMQIHEEVQKFTAGTEISGASLIGG---ADIKRQVEKLKK-HPRVIVGSPGRILE 129

Query: 389 SIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            I+  KL +     ++ DE  +   Q+ +   Q        ++ +T   R LV  S    
Sbjct: 130 LIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQD-------VIKSTMRDRQLVFFS---A 179

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWI--CPQIEEKKESN 499
            ++K  E  A    ++  ++ + R +   ++E   ++    +K  ++     + + K   
Sbjct: 180 TMTKAAEDAARDLAVEPQLVRVTRAESKSLVEHTYIICERREKNDYVRRIMHMGDVKAVA 239

Query: 500 FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F +   R + + E         A +H   S  ++E+ M +F+ G  ++L+AT +   GID
Sbjct: 240 FLNDPFRLDEITEKLKFRKMKAAALHAETSKQEREATMRAFRGGKLEILLATDIAARGID 299

Query: 557 VVDASIIIIENAEHFGLA----QLHQLRGRVGRGEEISSCILLYHP 598
           + D + +I     H  L     Q     GR GR  +  + + L  P
Sbjct: 300 IDDLTHVI-----HLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTP 340


>gi|159466510|ref|XP_001691452.1| eukaryotic initiation factor 4A-like protein [Chlamydomonas
           reinhardtii]
 gi|158279424|gb|EDP05185.1| eukaryotic initiation factor 4A-like protein [Chlamydomonas
           reinhardtii]
          Length = 413

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 122/314 (38%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++      Q+   
Sbjct: 81  IQQAQSGTGKTATFCAGILNNIDYNSNECQALVLAPTRELAQQIEKVMRALGDFLQVKCH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA----------LFQDSIQYYKLILVIVDEQ 403
              G    + R  A  RI      +++GT            L  DSI+ + L     DE 
Sbjct: 141 ACVGGT--SVREDA--RILGAGVQVVVGTPGRVFDMLRRRYLRADSIKMFTLDEA--DEM 194

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++    +   P   V + +AT  P  L +T        K   KP        V
Sbjct: 195 LSRGFKDQIYDIFQLLPPKLQVGVFSATLPPEALEITR-------KFMNKP--------V 239

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K       K  W    + +  E+          N R  V+      
Sbjct: 240 RILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAITQSVIFANTRRKVDWLTDKM 299

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 300 RERDHTVSATHGDMDQNTRDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 359

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 360 PENYLHRI-GRSGR 372


>gi|90577457|ref|ZP_01233268.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90440543|gb|EAS65723.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 654

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 118/291 (40%), Gaps = 36/291 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA++MAP   LA Q    IK   QN + + V  I G      + +AL+      AHI++G
Sbjct: 102 QAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALK----NGAHIVVG 157

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPRTLVLTSL 440
           T    +D I   +L L   DE H F + +  ++ +      V  +M   P     VL S 
Sbjct: 158 TPGRVKDLISRKQLQL---DEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLFS- 213

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
                   T  P  ++ +   +    RID   E   V  S+ ++ +W+   +E+ +    
Sbjct: 214 -------ATMPPIVKEIVDRFLRNPARIDVAGENRTV--SKVEQQFWVVKGVEKDEAMSR 264

Query: 497 ----ESNFRSVV--------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
               E    S+V        ER            A +HG +    +E  +D  K G   +
Sbjct: 265 LLETEDTDASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDI 324

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           L+AT V+  G+DV   + +   +      + +H++ GR GR       ILL
Sbjct: 325 LVATDVVARGLDVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRTGKAILL 374


>gi|67458656|ref|YP_246280.1| ATP-dependent RNA helicase RhlE [Rickettsia felis URRWXCal2]
 gi|67004189|gb|AAY61115.1| ATP-dependent RNA helicase RhlE [Rickettsia felis URRWXCal2]
          Length = 353

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 59/290 (20%), Positives = 126/290 (43%), Gaps = 32/290 (11%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q +  + K T + +I   ++ G  P   +   L++       +IIGT 
Sbjct: 11  ALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQLKK----NPKVIIGTP 66

Query: 384 A-----LFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQK--ATAPHVLLMTATPIPR 433
                 L + S++  ++ + ++DE  R    G++++L+   K       VL+ +AT +P+
Sbjct: 67  GRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSAT-MPK 125

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            ++  S   ++            PI+  +   N+    I++  + +S+ +K   +  Q+ 
Sbjct: 126 HIIAVSQKYLN-----------NPIRITVGATNKAAAEIKQESMHVSDKEKFSELTKQLG 174

Query: 494 EKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            ++ S       +   ++   + ++       IHG +S   +E V+ SF+    ++++AT
Sbjct: 175 NREGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQRQRERVILSFRKSNHRIMVAT 234

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+     +I  +        LH++ GR GR       +    P
Sbjct: 235 DVAARGLDIPHTQHVINYDLPMCPEDYLHRI-GRTGRAGATGHALSFISP 283


>gi|114564377|ref|YP_751891.1| ATP-dependent RNA helicase DbpA [Shewanella frigidimarina NCIMB
           400]
 gi|114335670|gb|ABI73052.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 467

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 133/310 (42%), Gaps = 39/310 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I Q   GSGKT    + +   ++      Q +++ P   LA Q  + I+   +    + V
Sbjct: 52  IGQAMTGSGKTAAFGLGLLNKLDVKRFRIQTMVLCPTRELADQVAKDIRTLARGIHNVKV 111

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P   +  +LE   HG AHII+GT     D +   +L L     +I+DE  R  
Sbjct: 112 LTLCGGVPMGPQVGSLE---HG-AHIIVGTPGRIVDHLDRNRLDLSNMNMLILDEADRML 167

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
             G QQ +            ++ A P  R  +L S    D  +        KP+   +  
Sbjct: 168 EMGFQQHIDQ----------IIAAAPRERQTLLFSATFPDQIQAIADQILYKPVMVKVEA 217

Query: 465 IN---RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------RSVVERFNSLHEHFT 515
            +    ID+   R++   ++G+        ++++ ES        R   +  +SLHE F 
Sbjct: 218 KHDNLTIDQHFYRIED--NQGRLEALRLLLLDKQPESAVVFCNTKRETQQVADSLHE-FG 274

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            S+  +HG +   D++ ++  F N + ++L+AT V   G+D+ +   +   +  +     
Sbjct: 275 FSVLALHGDLEQRDRDQMLLQFANRSARILVATDVAARGLDIDELDAVFNYHIAYDTEVH 334

Query: 576 LHQLRGRVGR 585
           +H++ GR GR
Sbjct: 335 IHRI-GRTGR 343


>gi|116628004|ref|YP_820623.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116101281|gb|ABJ66427.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus
           LMD-9]
          Length = 360

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 161/370 (43%), Gaps = 62/370 (16%)

Query: 276 SQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAPIGI 332
           + E+AI K++   +++   +L I     G+GKTL  L  +  +++     Q +I+AP   
Sbjct: 19  TTETAIQKELFTPITEGENILGI--SPTGTGKTLAYLFPLLLSLKPKKAQQLLILAPNSE 76

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA Q ++  K++ +   I  ++    +  + +++ +ER+  G   I+IGT     + I+ 
Sbjct: 77  LAGQIFDVTKQWAEPLGITAQLF---LSGSSQKRQIERLKKG-PEILIGTPGRVFELIKL 132

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT---LVLTSLGDIDISKIT 449
            K+ ++ V+        + L  +Q     H +   +  +PR    + +++   ID   + 
Sbjct: 133 KKIKMMNVNTIVLDEFDELLSDSQY----HFVTKISHHVPRNHQMIYISATNKIDSQDLV 188

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--------SNFR 501
           E         T++  ++      + L  +     K Y+I      + E         NFR
Sbjct: 189 EN--------TIVYDLSN-----QELDTI-----KHYYISVDKRNRVELLRKFSNIPNFR 230

Query: 502 SVVERFNSLHE--------HFTSSIAIIHGRMSDID---KESVMDSFKNGTCKLLIATTV 550
            +V  FNSL +         F  + A+     SDI+   ++ +++ FKN    LL+ T +
Sbjct: 231 GLV-FFNSLSDLGATEERLQFNGASAV--SLASDINVKFRKVILEKFKNHEISLLLGTDL 287

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHP----PLSKNSY 605
           +  GID+ +  ++I  +      A  H+  GR GR G E     L+ HP     L K + 
Sbjct: 288 LARGIDIENLEVVINFDIPRDREAYTHR-SGRTGRMGNEGRVISLVSHPEDLKKLKKFAK 346

Query: 606 TRLSVLKNTE 615
               VLKN E
Sbjct: 347 VSEIVLKNQE 356


>gi|324506599|gb|ADY42814.1| Eukaryotic initiation factor 4A [Ascaris suum]
 gi|324507947|gb|ADY43360.1| Eukaryotic initiation factor 4A [Ascaris suum]
          Length = 415

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 131/316 (41%), Gaps = 51/316 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    +++   ++      QA++MAP   LAQQ  + +    +   +   
Sbjct: 83  IAQAQSGTGKTATFSVSVLQNIDESIPEVQALVMAPTRELAQQIQKVMVSLGEYMGVKCH 142

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G       ++ LE       HI++GT     D IQ   L        +L   DE   
Sbjct: 143 ACIGGTNVRDDQRKLE----SGVHIVVGTPGRVNDMIQRQSLQTSAIKMFVLDEADEMLS 198

Query: 406 FGVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    K       V+L++AT     L +T+       +    P        V I
Sbjct: 199 RGFKDQIYEVFKCMPNDVQVVLLSATMPAEVLEVTN-------RFMNDP--------VRI 243

Query: 464 PINRIDEVIERLKVVLSEGKKAYW----ICP---QIEEKKESNFRSVVERFNSLHEHFTS 516
            + + +  +E ++    + +K  W    +C     +   +   F +   + + L    T 
Sbjct: 244 LVKKEELTLEGIRQFYIDVEKEEWKFETLCDLYQTVNVTQAVIFCNTRRKVDYLANQMTK 303

Query: 517 ---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAE 569
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I      N E
Sbjct: 304 EKYTVSCMHGDMEQSERDLIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRE 363

Query: 570 HFGLAQLHQLRGRVGR 585
           ++    +H++ GR GR
Sbjct: 364 NY----IHRI-GRSGR 374


>gi|323305025|gb|EGA58779.1| Dbp3p [Saccharomyces cerevisiae FostersB]
 gi|323337602|gb|EGA78847.1| Dbp3p [Saccharomyces cerevisiae Vin13]
          Length = 349

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 130/294 (44%), Gaps = 30/294 (10%)

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q ++++P   LA Q Y+ +   T    +    + G +P+  +R  L++     + +++
Sbjct: 8   GIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKK-----SQVVV 62

Query: 381 GTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLK---LTQKATAPHVLLMTAT 429
            T     D     S+   ++  +++DE  R    G ++ +K       A+    L+ TAT
Sbjct: 63  ATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTAT 122

Query: 430 --PIPRTLVLTSLGD---IDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEG 482
                R L  T + +   + I    +  A ++   I  V+ P  +  +++E LK   S  
Sbjct: 123 WPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGP 182

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           KK   +      KKE+   + VER N  +  +  ++A IHG +S   +   ++ FK+G  
Sbjct: 183 KKNEKVLIFALYKKEA---ARVER-NLKYNGY--NVAAIHGDLSQQQRTQALNEFKSGKS 236

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            LL+AT V   G+D+ +   +I           +H++ GR GR  +  +   L+
Sbjct: 237 NLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRI-GRTGRAGQTGTAHTLF 289


>gi|242371572|ref|ZP_04817146.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
 gi|242350724|gb|EES42325.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
          Length = 525

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 135/324 (41%), Gaps = 46/324 (14%)

Query: 299 QGDVGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           Q   G+GKT    I +   V  + G Q++I+AP   LA Q  E ++++++  ++ V  + 
Sbjct: 61  QAQTGTGKTGAFGIPLIEKVVGQEGVQSLILAPTRELAMQVAEQLREFSKGQRVQVVTVF 120

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGV 408
           G MP   + KAL+R       I++GT     D +          + LIL   DE    G 
Sbjct: 121 GGMPIDRQIKALKR----GPQIVVGTPGRVIDHLNRRTLKTHDIHTLILDEADEMMNMGF 176

Query: 409 QQRLKLTQK---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
              ++       A     +L +AT +P+ +         + +  + P   K IKT+   +
Sbjct: 177 IDDMRFIMDKIPADQRQTMLFSAT-MPKAIQEL------VQQFMKTP---KIIKTMNNEM 226

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------- 518
           +  D  IE    ++ E +K +       +  +     V  R     +  TS++       
Sbjct: 227 S--DPQIEEFYTIVKELEK-FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKA 283

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLA 574
             +HG ++   +  V+  FKN    +L+AT V   G+D+   S +    I ++ E +   
Sbjct: 284 EGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESY--- 340

Query: 575 QLHQLRGRVGRGEEISSCILLYHP 598
             H++ GR GR  +    +   +P
Sbjct: 341 -THRI-GRTGRAGKEGIAVTFVNP 362


>gi|312069559|ref|XP_003137738.1| hypothetical protein LOAG_02152 [Loa loa]
 gi|307767094|gb|EFO26328.1| hypothetical protein LOAG_02152 [Loa loa]
          Length = 415

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 142/331 (42%), Gaps = 81/331 (24%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    +A+   ++      QA++MAP   LAQQ  + +    +   +   
Sbjct: 83  IAQAQSGTGKTATFSVAVLQNIDETIPEVQALVMAPTRELAQQIQKVMLSLGEYLGVKCH 142

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
              G       ++ LE       H+++GT     D     S+Q   + + ++DE      
Sbjct: 143 ASIGGTNVRDDQRKLE----SGVHVVVGTPGRVNDMITRQSLQTNNIKMFVLDEADEMLS 198

Query: 407 -GVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKTV 461
            G ++++    K       V+L++AT     L +T+  + D              PI+ +
Sbjct: 199 RGFKEQIYDVFKCMPNDVQVVLLSATMPSEVLEVTNRFMND--------------PIRIL 244

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH---------- 511
           +          +R ++ L EG + ++I     EK+E  F ++ + +++++          
Sbjct: 245 V----------KREELTL-EGIRQFYINV---EKEEWKFETLCDLYSTVNVTQAVIFCNT 290

Query: 512 -------------EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                        E +T  ++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV 
Sbjct: 291 RRKVDYLATQMSKEKYT--VSCMHGEMEQSERDVIMREFRSGSSRVLITTDLLARGIDVQ 348

Query: 559 DASIIII----ENAEHFGLAQLHQLRGRVGR 585
             S++I      N E++    +H++ GR GR
Sbjct: 349 QVSLVINYDLPSNRENY----IHRI-GRSGR 374


>gi|289434733|ref|YP_003464605.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170977|emb|CBH27519.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 447

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 150/346 (43%), Gaps = 38/346 (10%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAVEAGGQAVIM 327
           + PT+ Q+  I  IL+  S       I Q   G+GKT   ++ +I      +   QAVI 
Sbjct: 38  YEPTEVQQKLIPGILKGESI------IGQSQTGTGKTHTFILPIINNVNPEKDAVQAVIT 91

Query: 328 APIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           AP   LA Q Y  I+K T+ ++  I V+++ G      +++A++++   Q  II+GT   
Sbjct: 92  APSRELATQIYNEIRKVTKYSEKEIAVQLVIGG---TDKQRAIDKLKK-QPQIIVGTPGR 147

Query: 386 FQDSIQYYKLIL-----VIVDEQH---RFGVQQRLK-LTQKATAPHVLLMTATPIPRTL- 435
             D I+   L +     +++DE       G    +  +  K  A   +L+ +  IP+ L 
Sbjct: 148 INDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSATIPQKLK 207

Query: 436 --VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
             +   + +     I  K A  K ++  I+     D+ ++ LK VL  G + Y       
Sbjct: 208 PFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRDK-LDLLKNVLV-GSQPYLAIVFTN 265

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            K  ++     E  N L E     +A IHG ++  +++  M   +N   + ++AT +   
Sbjct: 266 TKTTAD-----EVANGLTERGLK-VAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAAR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
           GID+   S ++  N E       +  R GR GR       + L+ P
Sbjct: 320 GIDIQGISHVV--NYELPDDLDFYIHRTGRTGRAGHSGIALTLFEP 363


>gi|284047011|ref|YP_003397351.1| hypothetical protein Cwoe_5571 [Conexibacter woesei DSM 14684]
 gi|283951232|gb|ADB53976.1| Protein of unknown function DUF1998 [Conexibacter woesei DSM 14684]
          Length = 761

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 113/281 (40%), Gaps = 40/281 (14%)

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH---- 373
           V+   +A+ + P   LAQ     +    +  ++   I  G+ PQ  RR A+ R A+    
Sbjct: 100 VDPRARALYLYPTKALAQDQARALAAL-RLEKLRPAIYDGDTPQIERR-AIRRSANVVLT 157

Query: 374 --GQAHI-IIGTHALFQDSIQYYKLILVIVDEQHRF---------GVQQRLKLTQKA--T 419
                H+ I+  HA + D +    L +V+VDE H +          V +RL+    A  T
Sbjct: 158 NPDMLHVGILPNHAAWGDFLA--NLAVVVVDEAHVYRGVFGSHVGNVLRRLRRIAAAYGT 215

Query: 420 APHVLLMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
            P  LL +AT   P+     LT L DI +      P+ ++ I     P+  +DE +    
Sbjct: 216 EPRFLLASATVANPLELAERLTGLDDITLVDEDGAPSAQRRIAMWNPPL--LDETLGARA 273

Query: 477 VVLSEGKK---------AYWICPQIEEKK-ESNFRSVVERF-NSLHEHFTSSIAIIHGRM 525
             LSE            A  IC     K  E   RS   R     HE     IA      
Sbjct: 274 SALSEAADLFADLVAAGARTICFMKSRKGVEIIMRSASARLRQGGHEDLVDRIAPYRAGY 333

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDV--VDASIII 564
           +   +  +      G  + ++AT  +E+GID+  +DA+I +
Sbjct: 334 TAYQRRELEQRLTRGELRGVVATDALELGIDIGELDAAICV 374


>gi|256810550|ref|YP_003127919.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
           AG86]
 gi|256793750|gb|ACV24419.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
           AG86]
          Length = 807

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 153/368 (41%), Gaps = 50/368 (13%)

Query: 280 AIKDIL--QDMSQKNRMLR----ILQGDVGSGKTLVA-LIAMAAAVEAGGQAVIMAPIGI 332
            IK++L  Q +S K  +L+    ++     SGKTL+  L  +   +E G + + + P+  
Sbjct: 207 GIKELLPVQTLSVKAGLLKGEDLLIVSATSSGKTLIGELAGIKNLIETGKKFLFLVPLVA 266

Query: 333 LAQQHY-EFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
           LA Q Y EF ++Y +   ++ + +  G +      K ++      A II+GT+      I
Sbjct: 267 LANQKYLEFKERYEKLGFKVSLRVGLGRIG-----KKVDVNTSLDADIIVGTYEGIDYLI 321

Query: 391 QYYKLI---LVIVDEQHRFGVQQR----------LKLTQKATAPHVLLMTATPIPRTLVL 437
           +  +L     V++DE H   +++R          L+   K  A  + L      P+ L  
Sbjct: 322 RTKRLKDVGTVVIDEIHSLNLEERGARLDGLIGRLRFLFK-DAQKIYLSATIGNPKELAK 380

Query: 438 TSLGDIDISKITEKPAGRKPI--KTVIIPINRIDEVIERLKVVLSE-GKKAYWICPQIEE 494
                + +      P  R  I  K     +N I E+++R    +S+ G +   +      
Sbjct: 381 QLNAKLVLYNGRPVPLERHIIFCKNDFAKLNIIKEIVKREWQNISKFGYRGQCLIFTYSR 440

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           K+  +    + R   +   F       HG M  I +  V D F N   + ++ T  +  G
Sbjct: 441 KRAEHLAKAL-RAKGIKAEFY------HGGMEYIRRRKVEDDFANQKIQCVVTTAALSAG 493

Query: 555 IDVVDASIIIIEN----AEHFGLAQLHQLRGRVGRG--EEISSCILLYHPPLSKNSYTRL 608
           +D   AS +I+E+     +    A+  Q+ GR GR    EI    LL    + K  + + 
Sbjct: 494 VD-FPASTVILESLAMGGDWLNPAEFQQMCGRAGRKGMHEIGKVYLLVE--IGKKYHAK- 549

Query: 609 SVLKNTED 616
             ++NTED
Sbjct: 550 --MENTED 555


>gi|188532283|ref|YP_001906080.1| primosome assembly protein PriA [Erwinia tasmaniensis Et1/99]
 gi|188027325|emb|CAO95168.1| Primosomal protein N', ATP-dependent helicase priA (Replication
           factor Y) [Erwinia tasmaniensis Et1/99]
          Length = 732

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   + +G QA+++ P IG+  Q     I ++ Q     VE++
Sbjct: 221 LLAGITGSGKTEVYLSVLENILASGHQALVLVPEIGLTPQT----IARFRQRFNAPVEVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   G+  I+IGT  ALF     + +L  +I+DE+H    +Q+
Sbjct: 277 HSGLNDSERLAVWLRARSGETAIVIGTRSALF---TPFARLGAIIIDEEHDNSYKQQ 330


>gi|220916267|ref|YP_002491571.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954121|gb|ACL64505.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 701

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 141/346 (40%), Gaps = 36/346 (10%)

Query: 260 KIAQKILRNIPFSPTKS-QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-AMAAA 317
           ++ Q I+  + ++  ++ QE A + IL     KN    ++      GKT  ++  A+A  
Sbjct: 10  RLQQAIVSRLGWTALRAVQELAGEAILDG---KNA---VVLAPTAGGKTEASIFPALANL 63

Query: 318 VEAGGQAV---IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH- 373
           VE G + V    +API  L     E +  YT+   +   +  G++P   +R+ +   A  
Sbjct: 64  VENGCEGVGVVYVAPIKALLNNQEERLGTYTEMVGLRRFVWHGDVPDRDKREFVREPAEL 123

Query: 374 ----GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG----------VQQRLKLTQKAT 419
                ++  ++     F     +  L +VIVDE H F           V +RL  + K  
Sbjct: 124 LMTTPESLEVMLLSPRFPTPKVFPDLRMVIVDEVHAFAGTERGAHLMSVLERLIKSTKND 183

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              + L      P  ++    G    + +   P      + + + ++     I R     
Sbjct: 184 VQRIGLSATVGNPEEILGWLQGTSRRAGVVVDPPKVSARRELHVSLHESVIDIARDAARR 243

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + G K+ + C     +  +   SV ER      H T  + + HG +S  ++      F +
Sbjct: 244 AAGNKSLFFC-----QSRALTESVAERMRG---HGTE-VFVHHGSVSREERHDAEAQFNH 294

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           GT   ++ T+ +E+GIDV D  +++  NA    ++   Q  GR GR
Sbjct: 295 GTNACIVCTSTLELGIDVGDLDLVMQANAPST-VSSFLQRMGRTGR 339


>gi|225444867|ref|XP_002281219.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297738640|emb|CBI27885.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 123/312 (39%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-------YYKL-ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++       Y K+ +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 196

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++        +   V + +AT  P  L +T        K   KP        V I
Sbjct: 197 RGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR-------KFMNKP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPE 361

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 362 NYLHRI-GRSGR 372


>gi|126739425|ref|ZP_01755118.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
 gi|126719525|gb|EBA16234.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
          Length = 468

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 158/371 (42%), Gaps = 57/371 (15%)

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL-- 308
           +G+P ++  ++A   L++    PT  Q  AI   L        +L + Q   G+GKT   
Sbjct: 32  MGLPKHILTRLANMGLKD----PTPIQARAIPHALNG----EDVLGLAQ--TGTGKTAAF 81

Query: 309 -VALIA--MAAAVEAGGQAV---IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM--- 359
            V LI+  +    +  G+ V   ++AP   LA Q  E +K  T+ T + V ++ G +   
Sbjct: 82  GVPLISRMLDYGRKPAGKTVRGLVLAPTRELANQIAETLKALTEGTPMKVGLVVGGVSIN 141

Query: 360 PQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           PQ      + RIA G   I++ T       L +D++       +++DE       Q L L
Sbjct: 142 PQ------ISRIARGT-DILVATPGRLLDILDRDALDLGSCDFLVLDE-----ADQMLDL 189

Query: 415 TQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-IDE 470
                  H L   +  +P   +T++ ++     +++I      ++P++  + P  +   +
Sbjct: 190 GFI----HALRKISALLPEERQTMLFSATMPKQMNEIANSYL-KRPVRIEVTPPGKPAAK 244

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNF-----RSVVERFNSLHEHFTSSIAIIHGRM 525
           V + +  +    K +         K E        +  +E+   + E    + A IHG  
Sbjct: 245 VTQSVHFIAKAEKLSLLKELLANHKDERTLVFGRTKYGMEKLMRVLEKAGFAAAAIHGNK 304

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S   +E  + +FK+G  K+L+AT V   G+D+ D   +      +   A +H++ GR  R
Sbjct: 305 SQGQRERALAAFKSGEIKVLVATDVAARGLDIPDVKFVYNYELPNVPDAYVHRI-GRTAR 363

Query: 586 ----GEEISSC 592
               GE ++ C
Sbjct: 364 AGKDGEAVAFC 374


>gi|328957296|ref|YP_004374682.1| primosome assembly protein PriA [Carnobacterium sp. 17-4]
 gi|328673620|gb|AEB29666.1| primosome assembly protein PriA [Carnobacterium sp. 17-4]
          Length = 804

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 73/145 (50%), Gaps = 7/145 (4%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           + + F   + Q++AI+ IL+ ++++   + +L+G  GSGKT + L  +A  ++    A++
Sbjct: 262 KTVSFQLNEGQQNAIQPILKAVTEERTEVFLLKGVTGSGKTEIYLQTIAQTLQNNKSALM 321

Query: 327 MAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           + P I +  Q    F  ++ +     V ++   +    +     +I  G+A +++G  + 
Sbjct: 322 LVPEIALTPQMVNHFKGRFGEE----VAVLHSGLSVGEKYDEWRKIERGEARVVVGARSS 377

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQ 410
               ++   + ++I+DE+H    +Q
Sbjct: 378 IFAPVK--NIGVIIIDEEHEATYKQ 400


>gi|327404500|ref|YP_004345338.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327320008|gb|AEA44500.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 407

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 156/384 (40%), Gaps = 62/384 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGGQAVI 326
           PT  Q  AI  IL        +  I Q   G+GKT      ++  ++ +       + ++
Sbjct: 24  PTDIQFKAISPILN----GEDVFGIAQ--TGTGKTAAFAIPIIHKLSTSRPKSKSPRCIV 77

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHGQAHIII 380
           +AP   LA+Q  +  +     + I +  I G + Q  + + L+R         G+   + 
Sbjct: 78  LAPTRELAEQIKDAFESIGVGSNIRITAILGGLEQDKQIQELKRGTDVIVATPGRVFDLR 137

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
               L  DSIQ+  L+L   D     G    +K   K        ++     +T+  ++ 
Sbjct: 138 SQGHLSLDSIQF--LVLDEADRMLDLGFAHDMKAIHK--------LSPQRNRQTMFFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D  I  +      R  I+  I P + + + +E   + +    K +++   I+E +E  F
Sbjct: 188 IDKKIKALAYDLV-RDAIRIQISPDDPVSKNVEHGAITVEMDDKRFFLENIIKEYEE--F 244

Query: 501 RSVV--------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           + VV        ER  +  E        +HG +   D+ +V++ FK+G  K+LI T V  
Sbjct: 245 KYVVFVRTKVRCERVVAAMERVGIHSEALHGGIEQKDRFAVLERFKSGENKILITTDVAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE----ISSC----------ILLY-- 596
            GID+     +I  +        +H++ GR GRGE     +S C          I LY  
Sbjct: 305 RGIDIQGVDYVINYDLPDQPEQYVHRI-GRTGRGENKGQALSFCSSEEEKMLEEIELYLG 363

Query: 597 ----HPPLSKNSYTRLSVLKNTED 616
                  +SK  Y+  ++L++TED
Sbjct: 364 YDIEKIEISKGDYS--AILRDTED 385


>gi|321250245|ref|XP_003191742.1| translation initiation factor [Cryptococcus gattii WM276]
 gi|317458209|gb|ADV19955.1| Translation initiation factor, putative [Cryptococcus gattii WM276]
          Length = 401

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 50/295 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    +++   ++      QA+++AP   LAQQ  + +        +   
Sbjct: 69  IAQAQSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQIQKVVIALGDYLNVDCH 128

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRF-- 406
              G       R+ + R+  G  HI++GT     D I    L     ++  +DE      
Sbjct: 129 ACVGG---TAVREDIARLNEG-PHIVVGTPGRVFDMINRGALKTEAVMMFCLDEADEMLS 184

Query: 407 -----GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                 + +  +L    T   V+L++AT  P  L +T            K   R PI+  
Sbjct: 185 TGFKESIYEIFQLLPGET--QVVLLSATMAPEVLDVT------------KKFMRDPIR-- 228

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYW----ICPQIEEKK-------ESNFRSVVERFNSL 510
            I + + +  +E ++      +K  W    +C   E           S  R V      L
Sbjct: 229 -ILVKKDELTLEGIRQFYINVEKEEWKLETLCDLYETVTITQAVIFCSTRRKVDWLTQQL 287

Query: 511 HE-HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           H+  FT  ++ +HG M   ++E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 288 HDRQFT--VSAMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVI 340


>gi|224127806|ref|XP_002329182.1| predicted protein [Populus trichocarpa]
 gi|222870963|gb|EEF08094.1| predicted protein [Populus trichocarpa]
          Length = 531

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + +IH  +S   +ESV+D F+ G   +LIAT V+  G+D      +I  +      + +H
Sbjct: 401 VGVIHSNLSQEQRESVIDDFRAGKTWVLIATDVLGRGMDFKGVKCVINYDFPDCAASYIH 460

Query: 578 QLRGRVGRGEEISSCILLY 596
           ++ GR GR   I   I  Y
Sbjct: 461 RI-GRSGRAGRIGEAITFY 478


>gi|242791510|ref|XP_002481772.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218718360|gb|EED17780.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 387

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 147/354 (41%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    ++++ +   V    QA++++
Sbjct: 35  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVVRETQALVLS 88

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + LE   +GQ H++ GT     D
Sbjct: 89  PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLE---YGQ-HVVSGTPGRVAD 144

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT +P      
Sbjct: 145 MIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT-LP------ 197

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E 
Sbjct: 198 ----YDVLDMTTKFMT-DPVRILV----------KRDELTL-EGLKQYFIAV---EKEEW 238

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 239 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 296

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 297 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY----IHRI-GRSGR 345


>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
          Length = 499

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 133/327 (40%), Gaps = 48/327 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I +   ++      Q +I+AP   LA Q  E + K   + ++ V 
Sbjct: 43  IGQAQTGTGKTAAFGIPLVEKIDTKNTNVQGLIIAPTRELAIQVSEELYKVGYDKRVRVL 102

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G      + +A+++      HII+GT     D I        Q + L+L   DE   
Sbjct: 103 AVYGGQDINRQIRAMKK----GPHIIVGTPGRLLDHINRRTLKLDQVHTLVLDEADEMLN 158

Query: 406 FGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGDIDISKITEK----PAGRKPI 458
            G    ++  L         LL +AT P P            I KI E     P   K +
Sbjct: 159 MGFIDDIESILKNVPEGRQTLLFSATMPGP------------IRKIAENFMTNPETVK-V 205

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           K+  + ++ ID+       V ++ ++ + I  ++ + +      V  R     +  + ++
Sbjct: 206 KSKEMTVSLIDQYF-----VKAQEREKFDILARLLDTQSPELAIVFGRTKRRVDELSKAL 260

Query: 519 AI-------IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +I       IHG +S   + SV+  FK G  ++L+AT V   G+D+   + +   +    
Sbjct: 261 SIRGYQAEGIHGDLSQAKRSSVLRKFKEGRIEVLVATDVAARGLDISGVTHVYNYDIPQD 320

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHP 598
             + +H++ GR GR  +    +    P
Sbjct: 321 PESYVHRI-GRTGRAGKEGMAMTFVTP 346


>gi|170589285|ref|XP_001899404.1| KIAA0801 protein [Brugia malayi]
 gi|158593617|gb|EDP32212.1| KIAA0801 protein, putative [Brugia malayi]
          Length = 964

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 130/317 (41%), Gaps = 53/317 (16%)

Query: 302 VGSGKTLVALIAMAAAV-------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+ M   +       E  G  AVIM+P   LA Q ++   K+ +   + V 
Sbjct: 350 TGSGKTLAFLLPMFRHILDQPELEEMDGPIAVIMSPTRELAMQTWKEANKFAKQLNVRVA 409

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHR 405
            + G +  + +   L+R     A +++ T     D +   K        +  +++DE  R
Sbjct: 410 CVYGGVGISDQIGDLKR----GAEVVVCTVGRLTDMLAANKGKVTNLRRVTYLVLDEADR 465

Query: 406 F---GVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
               G + Q +K+          ++ +   PR +   +   +D           KPI+ +
Sbjct: 466 MFDMGFEPQVMKIVNNIRPDRQTVLFSATFPRQMEALARKILD-----------KPIEIM 514

Query: 462 IIPINRIDEVIERLKVVLSEGKK---------AYWICPQIEEKKESNFRSVVERFNSLHE 512
           +   + + + + +  V+L E +K          YW     E      F    E+ + L  
Sbjct: 515 VGGKSVVCDDVNQNVVILEEHQKMLKLLELLGVYW-----ENGNVLVFVDKQEKADDLVA 569

Query: 513 HFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
               S    A +HG +   D++S +  +K G  KLL+AT+V   G+D+    +++  +  
Sbjct: 570 QLMRSGYNCAPLHGGIDQFDRDSTILDYKAGKIKLLVATSVAARGLDIKKLILVVNYDCP 629

Query: 570 HFGLAQLHQLRGRVGRG 586
           +     +H++ GR GR 
Sbjct: 630 NHYEDYVHRV-GRTGRA 645


>gi|57899404|dbj|BAD88051.1| putative ATP-dependent RNA helicase DB10 [Oryza sativa Japonica
           Group]
 gi|215694706|dbj|BAG89897.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 583

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 116/273 (42%), Gaps = 54/273 (19%)

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G   +++AP   LA Q  E   K+ ++++I    + G  P+  + + L+R       ++
Sbjct: 12  SGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLDR----GVDVV 67

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTAT 429
           + T     D ++  ++ L     +++DE  R    G + +++   K   P    L+ TAT
Sbjct: 68  VATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTAT 127

Query: 430 PIPRTL-----------VLTSLGDID----ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             P+ +           V  ++G +D     S IT+          +I P     E + R
Sbjct: 128 -WPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQN-------VELITP----SEKLRR 175

Query: 475 LKVVL---SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
           L+ +L     G K    C        +  R   +   +L   F +S   IHG  S  ++E
Sbjct: 176 LEQILRSQDSGSKVLIFC--------TTKRMCDQLARTLTRQFGASA--IHGDKSQSERE 225

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            V+  F++G   +L+AT V   G+D+ D  ++I
Sbjct: 226 KVLSHFRSGRSPILVATDVAARGLDIKDIRVVI 258


>gi|254694449|ref|ZP_05156277.1| primosome assembly protein PriA [Brucella abortus bv. 3 str. Tulya]
 gi|261214763|ref|ZP_05929044.1| primosome assembly protein PriA [Brucella abortus bv. 3 str. Tulya]
 gi|260916370|gb|EEX83231.1| primosome assembly protein PriA [Brucella abortus bv. 3 str. Tulya]
          Length = 744

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 7/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           ++ Q++A + + +        + +L G  GSGKT V   A+A A++AG Q +I+ P   L
Sbjct: 212 SQDQQAAAEMLSEAAEAGGFSVSLLDGVTGSGKTEVYFEAVAKALDAGRQVLILLPEIAL 271

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
            QQ   F+ ++             ++    R +   ++A G   ++ G   ALF   + +
Sbjct: 272 TQQ---FLDRFHDRFGAKPAEWHSDLAPRTRERVWRQVAEGTVRVVAGARSALF---LPF 325

Query: 393 YKLILVIVDEQHRFGVQQ 410
            +L L++VDE+H    +Q
Sbjct: 326 KELGLIVVDEEHDPAYKQ 343


>gi|213406593|ref|XP_002174068.1| ATP-dependent RNA helicase, eIF4A related [Schizosaccharomyces
           japonicus yFS275]
 gi|212002115|gb|EEB07775.1| ATP-dependent RNA helicase, eIF4A related [Schizosaccharomyces
           japonicus yFS275]
          Length = 394

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 154/372 (41%), Gaps = 87/372 (23%)

Query: 258 EGKIAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           E K+ + +LR I      +P+  Q  AI  I      K R + I Q   G+GKT    I 
Sbjct: 25  EMKLKEDLLRGIYAYGYETPSAIQSRAITQIC-----KGRDV-IAQAQSGTGKTATFSIG 78

Query: 314 MAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           +  +++      QA+I++P   LA Q    +     +  +      G     +  K L+ 
Sbjct: 79  ILQSIDLSVRETQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLD- 137

Query: 371 IAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP- 421
             +GQ H++ GT     D I+           L+L   DE    G + ++    +   P 
Sbjct: 138 --YGQ-HVVSGTPGRVTDMIRRRNLRVRNVKMLVLDEADELLNRGFKDQIYDIYRYLPPG 194

Query: 422 -HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             V++++AT     L LT+       K T  P              RI  +++R ++ L 
Sbjct: 195 TQVVVVSATLPQDVLELTN-------KFTTDPV-------------RI--LVKRDELTL- 231

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSL-----------------------HEHFTSS 517
           EG K Y+I     EK+E  F ++ + +++L                         +FT  
Sbjct: 232 EGLKQYFIAV---EKEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLAEKMREANFT-- 286

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGL 573
           +  +HG M   +++++M  F+ G  ++L+ T +   GIDV   S++I      N E++  
Sbjct: 287 VTSMHGEMPQKERDAIMQEFRQGHSRVLLCTDIWARGIDVQQVSLVINYDLPSNRENY-- 344

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 345 --IHRI-GRSGR 353


>gi|154417727|ref|XP_001581883.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121916114|gb|EAY20897.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 441

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 149/372 (40%), Gaps = 75/372 (20%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAP 329
           PT  Q++ +K I+   +       I+    G+GKT    + +I+  +    G  A++++P
Sbjct: 26  PTAVQQACVKQIITGHNC------IVISQTGTGKTAAFALPIISTLSKDPYGIYALVISP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HA 384
              LAQQ  +  K + +     +  I G +    +  ALE+      HI++ T     H 
Sbjct: 80  TRELAQQICQQFKIFGRGMNADICPIIGGLAITDQASALEK----NPHIVVATPGRILHH 135

Query: 385 LFQ----------DSIQYYKLILVIVDEQHRFGV------------QQRLKLTQKATAPH 422
           L            D++QY  L+L  VD   + G             ++R  L   AT   
Sbjct: 136 LRSASKGNTRFSFDNLQY--LVLDEVDRLFKDGYWDDVLEIIKYLPEKRQTLCFSATKSD 193

Query: 423 ----VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               + +MT  P   +  L S+G    S           +     P + +   IE +KV+
Sbjct: 194 QVDLLTIMTKPPSTSSCPLPSVGKSWFSD--------DKLTFYWEPTDDLKPKIEHVKVL 245

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE----------HFTSSIAIIHGRMSDI 528
           + +  +  ++   I++  E++    V  F S  E          +F+   A++H  M + 
Sbjct: 246 VQDEGREVYLMIIIQKLMEADLYKQVIVFASTKEAAQTITLILRNFSYKTAVMHSDMQES 305

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRV 583
           ++   ++ F+ G  ++L+AT V   G+D     I  ++N  HF   Q     +H+  GR 
Sbjct: 306 ERLKELEEFRAGRQRILVATDVAARGLD-----IPFVDNVIHFNPPQNAATYVHRA-GRT 359

Query: 584 GRGEEISSCILL 595
           GR       IL 
Sbjct: 360 GRAGREGRSILF 371


>gi|162458395|ref|NP_001105396.1| translational initiation factor eIF-4A [Zea mays]
 gi|2341061|gb|AAB67607.1| translational initiation factor eIF-4A [Zea mays]
          Length = 414

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 124/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 82  IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 141

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 142 ACVGGTSV----REDQRILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMF--VLDEADEM 195

Query: 404 HRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++        +   V + +AT  P  L +T        K   KP        V
Sbjct: 196 LSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR-------KFMNKP--------V 240

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K       K  W    + +  E+          N R  V+      
Sbjct: 241 RILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKM 300

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 301 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 360

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 361 PENYLHRI-GRSGR 373


>gi|42521860|ref|NP_967240.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574390|emb|CAE77894.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 505

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 151/359 (42%), Gaps = 71/359 (19%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT-------LVALIAMAAAVEAGG-Q 323
           +PT  Q +AI  IL+     + +L I Q   G+GKT       L  L      +E    +
Sbjct: 26  TPTPIQLAAIPVILEG----HDLLGIAQ--TGTGKTAAFSLPILQNLSKHTRKIEPKSPR 79

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   LA Q +E I+ Y+++  +   +I G + Q  + +AL+    G   I+I T 
Sbjct: 80  CLILTPTRELAIQIHENIEAYSKHLNMKHAVIFGGVGQNPQVRALQ----GGVDILIATP 135

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLK-----LTQK-------ATAPHV 423
               D      ++  ++ + ++DE  R    G  Q +K     L QK       AT PH 
Sbjct: 136 GRLMDLHGQKHLKLDRVEIFVLDEADRMLDMGFMQDIKKILPLLPQKRHNLFFSATMPHE 195

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           +   A    R LV                    P K  + P++   E +E+  + + + +
Sbjct: 196 IQTLAN---RILV-------------------NPKKVEVTPVSSTAEKVEQRVMFVDKPQ 233

Query: 484 KAYWICPQIEEKKESNFRSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
           K   +   ++++  S     V+     N + +  T +    A IHG  S   ++  ++ F
Sbjct: 234 KLDLLLHILKDESLSKVLVFVQMKYGANRVVDRLTKAGVAAAGIHGDKSQNQRQRALEEF 293

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           KNG  ++L+AT +   GID+   + +I     H   + +H++ GR  R    G  IS C
Sbjct: 294 KNGDVRVLVATDIAARGIDIDGITHVINLELPHIPESYVHRI-GRTARAGATGISISFC 351


>gi|293605139|ref|ZP_06687530.1| ATP-independent RNA helicase DbpA [Achromobacter piechaudii ATCC
           43553]
 gi|292816463|gb|EFF75553.1| ATP-independent RNA helicase DbpA [Achromobacter piechaudii ATCC
           43553]
          Length = 462

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 138/325 (42%), Gaps = 44/325 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQ---NTQI 350
           I Q   GSGKT    + +   ++      QA+++ P   LA Q  + +++  +   N +I
Sbjct: 45  IAQAKTGSGKTAAFGLGVLQKLDPARLAPQALLVCPTRELADQVAQELRRLARLIPNVKI 104

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR 405
           +   + G  P    R   E +A G AH+++GT    QD     S+    L  +++DE  R
Sbjct: 105 LT--LCGGAPA---RPQAESLARG-AHLVVGTPGRIQDHLERGSLDLSGLTTLVLDEADR 158

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
             V         A A H       P  R TL+ ++    +I K++ +   R P + V + 
Sbjct: 159 M-VDMGFYDDIVAIASHC------PAKRQTLLFSATYPDNIRKLSARFL-RNPAE-VKVE 209

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE--------RFNSLHEHFTS 516
                  IE++   + E  +   +   +     ++FR V          R + L E   +
Sbjct: 210 AQHDASRIEQIFYEIDEKDRLDAVARLL-----AHFRPVSTLAFCNTKIRSHDLVERLQA 264

Query: 517 ---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S   ++G +   +++ ++  F N +C +L+AT V   G+D+ +   +I  +      
Sbjct: 265 DGISAQALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVINVDVTKDTE 324

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
             +H++ GR GRG++    + L  P
Sbjct: 325 VHVHRI-GRSGRGDQKGLALSLCSP 348


>gi|266619246|ref|ZP_06112181.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
 gi|288869241|gb|EFD01540.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
          Length = 432

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 118/276 (42%), Gaps = 25/276 (9%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +++I+ P   LA Q  E  K+Y  +T +   +I G +    + K L+R       I++ T
Sbjct: 77  RSLILTPTRELALQIAENFKEYGSHTPVRCAVIFGGVSAVPQIKELQR----GIDILVAT 132

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLV 436
                D I   ++ L      ++DE  R      +   +K       +++  P+ + TL+
Sbjct: 133 PGRLNDLIHQGEISLSHVEMFVLDEADRMLDMGFIHDVKK-------IISLLPVKKQTLL 185

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE-RLKVVLSEGKKAYWICPQIEEK 495
            ++    +I  +TEK     P    + P++ I ++IE  L  V  E K+A  +     E 
Sbjct: 186 FSATMPPEIQALTEK-LLHNPAVVEVTPVSSIVDLIEDSLYYVDKENKRALLVHLLKREA 244

Query: 496 KESNF-----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             S       +   +R          + A IHG  S   ++  +  FK GT ++L AT +
Sbjct: 245 ITSTLVFTRTKHGADRMAKFLTKNRINAAAIHGDKSQGARQKALSQFKAGTVRVLAATDI 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              GID+ + S +I  +  +     +H++ GR GR 
Sbjct: 305 AARGIDIEELSCVINFDLPNVPETYVHRI-GRTGRA 339


>gi|147834872|emb|CAN70196.1| hypothetical protein VITISV_040309 [Vitis vinifera]
          Length = 410

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 123/312 (39%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-------YYKL-ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++       Y K+ +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 196

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++        +   V + +AT  P  L +T        K   KP        V I
Sbjct: 197 RGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR-------KFMNKP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPE 361

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 362 NYLHRI-GRSGR 372


>gi|159040687|ref|YP_001539939.1| DEAD/DEAH box helicase domain-containing protein [Caldivirga
           maquilingensis IC-167]
 gi|157919522|gb|ABW00949.1| DEAD/DEAH box helicase domain protein [Caldivirga maquilingensis
           IC-167]
          Length = 926

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 137/342 (40%), Gaps = 41/342 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-----AMAAAVEAGGQAVIM 327
           PTK QE AI  +L           ++    G+GKT  AL+      + + V  G + + +
Sbjct: 25  PTKVQELAIPIVLTGEHT------LISSPTGTGKTEAALLPVLSMMLNSGVREGIRILYI 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   L +   + I++ +    + + +  G+   + R     R       I+I T    Q
Sbjct: 79  TPAKSLNRDLEQRIRRLSSLLGLTIAVRHGDTTSSER----SRQRRNPPQILITTPETLQ 134

Query: 388 DSI------QYYKLI-LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             +       + + +  VI+DE H     +R    Q A     L+  A    R  +  ++
Sbjct: 135 ILLVSPVMRNWLRGVGWVIIDEVHELLGSKRG--VQLAVGLERLVELAGEFQRIALSATI 192

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
           GD++++       GR      I+ +N +   +E     L           +I E      
Sbjct: 193 GDLELASSLVGGVGRG---VRIVNVNDVSRTMELTIHYLRPDSDIEEAARRISEVVNRYG 249

Query: 498 ------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                 +N R + E   +  +   + + + HG +S   +E+V +  +NG  K++++T+ +
Sbjct: 250 GSVLLFTNTRDMAELLGTELKKVINGVEVYHGSLSRERRETVEEGLRNGEVKVVVSTSSL 309

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSC 592
           E+GID+     +I    ++    Q  +L  RVGR G E+   
Sbjct: 310 ELGIDIGSIEAVI----QYMSPKQSDRLIQRVGRSGHEVGGV 347


>gi|115437508|ref|XP_001217828.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624]
 gi|121734188|sp|Q0CAS8|FAL1_ASPTN RecName: Full=ATP-dependent RNA helicase fal1
 gi|114188643|gb|EAU30343.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624]
          Length = 399

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 147/354 (41%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFAISILQVIDTVVRESQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + + ++ +GQ H++ GT     D
Sbjct: 101 PTRELATQIQSVIMALGDYMNVQCHACIGGTNIG---EDIRKLDYGQ-HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT +P      
Sbjct: 157 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT-LP------ 209

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E 
Sbjct: 210 ----YDVLDMTTKFMT-DPVRVLV----------KRDELTL-EGIKQYFIAV---EKEEW 250

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 251 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 308

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 309 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENY----IHRI-GRSGR 357


>gi|90022339|ref|YP_528166.1| transcription elongation factor GreA / replication restart DNA
           helicase PriA [Saccharophagus degradans 2-40]
 gi|89951939|gb|ABD81954.1| transcription elongation factor GreA / replication restart DNA
           helicase PriA [Saccharophagus degradans 2-40]
          Length = 736

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 27/207 (13%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRM-LRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +L N P +  + Q +A + ++      +R    +L G  GSGKT V L  +A A++AG Q
Sbjct: 197 LLNNTPLTLNQEQTAAQESVI-----FHRFGAYLLDGVTGSGKTEVYLQLVARALQAGTQ 251

Query: 324 AVIMAP-IGILAQQHYEFIKKYTQNTQIIVEI--ITGNMPQAHRRKALERIAHGQAHIII 380
           A+++ P IG+  Q    F  +++      VEI  +  ++ +A R +  +    G+A I+I
Sbjct: 252 ALVLIPEIGLSPQTVGRFKDRFS------VEIAELHSSINEAKRAEHWQAAKSGRAKIVI 305

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-------TAPH---VLLMTATP 430
           GT      ++   K  ++IVDE+H    +Q       A          H   V+L +ATP
Sbjct: 306 GTRLAALAALN--KPGIIIVDEEHDLSYKQHDGFRYSARDICVYRAKQHNIPVVLGSATP 363

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKP 457
              TL     G     K+T++ +   P
Sbjct: 364 SLETLNNAITGRYQHLKLTQRASTATP 390


>gi|485388|dbj|BAA06336.1| eukaryotic initiation factor 4AII [Homo sapiens]
          Length = 407

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 123/290 (42%), Gaps = 39/290 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 74  IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 133

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 134 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 190

Query: 406 FGVQQRL-KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            G + ++ ++ QK      ++  +  +P           D+ ++T+K   R PI+   I 
Sbjct: 191 RGFKDQIYEIFQKLNTSIQVVFASATMP----------TDVLEVTKKFM-RDPIR---IL 236

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEHF 514
           + + +  +E +K      ++  W    + +  E+          N R  V+         
Sbjct: 237 VKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHAR 296

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 297 DFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 346


>gi|17545341|ref|NP_518743.1| ATP-dependent RNA helicase DbpA [Ralstonia solanacearum GMI1000]
 gi|17427633|emb|CAD14152.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 465

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 135/309 (43%), Gaps = 32/309 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    +A+ A ++      QA+++ P   LA Q  + I++  +  + + V
Sbjct: 49  IAQAKTGSGKTAAFSLALLARLDTRRFDVQAMVLCPTRELADQVAQEIRRLARAEENVKV 108

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G  P   +  +LE   HG AH+++GT     D ++   L L     +++DE  R  
Sbjct: 109 LTLCGGTPMRPQAASLE---HG-AHVVVGTPGRIMDHLERGNLALGALKTLVLDEADRML 164

Query: 407 --GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIK 459
             G    +    +   P    LL +AT  P  +   S   L +    K+ E+    K I+
Sbjct: 165 DMGFFDDIATVVRQCPPERQTLLFSAT-YPDGIAKLSRQILRNPKEVKLEERHDDSK-IR 222

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
                +   DE +  + ++L   +    +     +++  N   V+ R    H     ++A
Sbjct: 223 QRFYEVTD-DERLHAVGLLLKHYRPVSTLAFCNTKQQCRNLLDVL-RAQGFH-----ALA 275

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG +   +++ V+  F N +C +L+AT V   G+D+     +I  +        +H++
Sbjct: 276 L-HGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRI 334

Query: 580 RGRVGRGEE 588
            GR GR ++
Sbjct: 335 -GRTGRADQ 342


>gi|58259399|ref|XP_567112.1| translation initiation factor [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134107479|ref|XP_777624.1| hypothetical protein CNBA7450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687330|sp|Q5KN60|IF4A_CRYNE RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|50260318|gb|EAL22977.1| hypothetical protein CNBA7450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223249|gb|AAW41293.1| translation initiation factor, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 401

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 50/295 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    +++   ++      QA+++AP   LAQQ  + +        +   
Sbjct: 69  IAQAQSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQIQKVVIALGDYLNVDCH 128

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRF-- 406
              G       R+ + R+  G  HI++GT     D I    L     ++  +DE      
Sbjct: 129 ACVGGTA---VREDIARLNEG-PHIVVGTPGRVFDMINRGALKTEAVMMFCLDEADEMLS 184

Query: 407 -----GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                 + +  +L    T   V+L++AT  P  L +T            K   R PI+  
Sbjct: 185 TGFKESIYEIFQLLPGET--QVVLLSATMAPEVLDVT------------KKFMRDPIR-- 228

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYW----ICPQIEEKK-------ESNFRSVVERFNSL 510
            I + + +  +E ++      +K  W    +C   E           S  R V      L
Sbjct: 229 -ILVKKDELTLEGIRQFYINVEKEEWKLETLCDLYETVTITQAVIFCSTRRKVDWLTQQL 287

Query: 511 HE-HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           H+  FT  ++ +HG M   ++E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 288 HDRQFT--VSAMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVI 340


>gi|332704723|ref|ZP_08424811.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554872|gb|EGJ51916.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 517

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S+  + G +S   ++  MD F+NG  ++++AT +   GID    S+++  +      A  
Sbjct: 267 SVTSLQGNLSQGRRQEAMDGFRNGKYRVMVATDIAARGIDCERVSLVVNFDLPDTAEAYT 326

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           H++ GR GR E     + L  P
Sbjct: 327 HRI-GRTGRAERNGEAVSLVAP 347


>gi|268319210|ref|YP_003292866.1| Primosomal protein N' (ATP-dependent helicase priA) (Replication
           factor Y) [Lactobacillus johnsonii FI9785]
 gi|262397585|emb|CAX66599.1| Primosomal protein N' (ATP-dependent helicase priA) (Replication
           factor Y) [Lactobacillus johnsonii FI9785]
          Length = 798

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 7/135 (5%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q  A+  I   + +K     +L+G  GSGKT V L A++ A+E    A+++ P I +  Q
Sbjct: 266 QLDALNSIGTSIKEKEAKTFLLEGITGSGKTEVYLHAISTALEQKRNALMLVPEISLTPQ 325

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
              +  +++  N    V ++   + +  +     RI  G+A +++G  +     ++   L
Sbjct: 326 MVKQVKERFGDN----VAVLHSGLSEGEKYDEWRRIRRGEAQVVVGARSAIFAPLKNIGL 381

Query: 396 ILVIVDEQHRFGVQQ 410
           IL  +DE+H    +Q
Sbjct: 382 IL--IDEEHESSYKQ 394


>gi|261855412|ref|YP_003262695.1| primosomal protein N' [Halothiobacillus neapolitanus c2]
 gi|261835881|gb|ACX95648.1| primosomal protein N' [Halothiobacillus neapolitanus c2]
          Length = 774

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 19/176 (10%)

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           +N  + +L+G  GSGKT V L  ++  +  G Q +I+ P   L  Q    + ++T    +
Sbjct: 256 ENFGVWLLEGVTGSGKTEVYLNLISRVLAQGRQVLILVPEIALTPQ---LVTRFTDRLGL 312

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHR---- 405
           +  ++   +    R  A      G A ++IGT  A+FQ    +  L L++VDE+H     
Sbjct: 313 VPAVLHSGLNDGDRLNAWLAARSGDATVVIGTRSAVFQ---PFADLGLIVVDEEHDGSFK 369

Query: 406 ----FGVQQR---LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
               FG   R   +   ++   P ++L +ATP   +L   SL    +  + E+  G
Sbjct: 370 QSEGFGYHARDVAIWRARRLGVP-IMLGSATPSLESLRNVSLSRYHLLTLPERAGG 424


>gi|239813736|ref|YP_002942646.1| primosomal protein N' [Variovorax paradoxus S110]
 gi|239800313|gb|ACS17380.1| primosomal protein N' [Variovorax paradoxus S110]
          Length = 700

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 27/183 (14%)

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           G+IAL  +  Q +   G       ++A+++ R     P      A   +     Q   + 
Sbjct: 97  GEIALAALPPQLRDLSGT------QLARRLKRKTAAGPVAETAEAAHPVALSAEQTAALA 150

Query: 296 RI---------LQGDVGSGKTLVALIAMAA--AVEAGGQAVIMAP-IGILAQQHYEFIKK 343
           RI         L G  GSGKT V L  +A   A + G QA++M P I +  Q    F  +
Sbjct: 151 RIEAGEAGTFLLVGSTGSGKTEVYLRCVADLLAADPGAQALVMVPEINLTPQLEARFKAR 210

Query: 344 YTQNTQIIVEIITG-NMPQAHRRKALERIAH-GQAHIIIGTHALFQDSIQYYKLILVIVD 401
           +  +   +V + +G   PQ   R A    AH G A I++GT      S+   K  LV+VD
Sbjct: 211 FGDDA--VVSLHSGMTNPQ---RLASWLAAHSGAARIVLGTRMAVFASMPGLK--LVVVD 263

Query: 402 EQH 404
           E+H
Sbjct: 264 EEH 266


>gi|315230780|ref|YP_004071216.1| ATP-dependent RNA helicase [Thermococcus barophilus MP]
 gi|315183808|gb|ADT83993.1| ATP-dependent RNA helicase [Thermococcus barophilus MP]
          Length = 770

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 8/135 (5%)

Query: 303 GSGKTLVAL-IAMAAAVEAGGQAVIMAPIGILAQQHYE-FIKKYTQNTQIIVEIITGNMP 360
           G GKTL+A+ IA     + GG+ +++AP   LA QH E F++ +    + I  ++TG +P
Sbjct: 33  GLGKTLIAMMIADYRLSKYGGKVLMLAPTKPLALQHRESFVRLFNLPPEKI-NVLTGELP 91

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR-FG----VQQRLKLT 415
              R K  ER     A      + L    I    ++L++ DE HR  G    V    +  
Sbjct: 92  PEQRAKIWERSIIITATPQTTENDLLVGRISLEDVVLLVFDEAHRAVGNYAYVYIAKEYM 151

Query: 416 QKATAPHVLLMTATP 430
           Q+A  P +L +TA+P
Sbjct: 152 QQAKHPLILGLTASP 166


>gi|197104230|ref|YP_002129607.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
 gi|196477650|gb|ACG77178.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
          Length = 470

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 118/285 (41%), Gaps = 32/285 (11%)

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q  E  K Y ++  + V +I G +    + +AL     G   +++ T  
Sbjct: 79  LVLSPTRELATQIAESFKAYGRHLGLSVAVIFGGVKYGPQMRALA----GGVDVLVATPG 134

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLT 438
              D +Q   ++L      ++DE  +        L      P   ++   P  R  L  +
Sbjct: 135 RLIDHLQEKSVVLEGVETFVLDEADQM-------LDMGFIVPIRRIVKFLPKRRQNLFFS 187

Query: 439 SLGDIDISKITEKPAGRKPIK-TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +    +I K+T +     P+K TV  P   ++ + +R+  V  + K+A       E   +
Sbjct: 188 ATMPAEIEKLTGEILNPNPLKVTVTPPSTTVERINQRVLFVEQQRKRALLA----ELFDD 243

Query: 498 SNFRSVV---------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           ++F+ V+         +R     E      A IHG  S   +E  + +FK G  + L+AT
Sbjct: 244 ASFKRVIVFTRTKRGADRVARGLEQVGVEAASIHGDKSQGQRERALAAFKAGDVRALVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            +   GID+   S ++     +   A +H++ GR  R     S +
Sbjct: 304 DIAARGIDIDAVSHVVQFELPNVPEAYVHRI-GRTARAGADGSAV 347


>gi|145629153|ref|ZP_01784952.1| ATP-dependent DNA helicase [Haemophilus influenzae 22.1-21]
 gi|144978656|gb|EDJ88379.1| ATP-dependent DNA helicase [Haemophilus influenzae 22.1-21]
          Length = 138

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI   G  N     DLLF+ P  + DR     I+ +  E+  T
Sbjct: 10  PLTSLSGVGAAISNKLAKI---GIQN---LQDLLFHLPIRYEDRTRITPIANLRPEQYFT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q       +R    + L+DGT +I L FF     M +N F  G ++   G+IK 
Sbjct: 64  IEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVGVRVKAFGEIKT 121

Query: 132 LKNRI 136
             + +
Sbjct: 122 WASHV 126


>gi|37528574|ref|NP_931919.1| primosome assembly protein PriA [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36788012|emb|CAE17131.1| primosomal protein N' (replication factor Y) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 739

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +E G QA+I+ P IG+  Q     I+++ +     V+++
Sbjct: 228 LLAGITGSGKTEVYLSVLENILEQGKQALILVPEIGLTPQT----IRRFRERFNAPVDVL 283

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   G+  I+IGT  ALF     +  L ++I+DE+H    +Q+
Sbjct: 284 HSALNDSERLAVWLRARQGENAIVIGTRSALF---TPFACLGIIIIDEEHDSSYKQQ 337


>gi|328676775|gb|AEB27645.1| Cold-shock DEAD-box protein A [Francisella cf. novicida Fx1]
          Length = 569

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 143/334 (42%), Gaps = 47/334 (14%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG-----QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           Q   G+GKT    + +   ++        Q +++AP   LA Q  E  + + +N   + V
Sbjct: 50  QAQTGTGKTAAFALPLINNIDLKSRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDV 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQH 404
             I G      + +AL++       +++GT     D I+           L+L   DE  
Sbjct: 110 ACIYGGQEYGSQIRALKQ----GVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEML 165

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           R G    +K  L+  +     LL +AT IP           DI+ I E+   R P K  +
Sbjct: 166 RMGFIDDVKFVLSHVSDECQRLLFSAT-IP----------TDIADIIEEYL-RNPCKIQV 213

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--------RSVVERFNSLHEHF 514
               +    + + K ++ +G +      ++ E +E++          S +E  ++L +  
Sbjct: 214 KAKTKTANTVTQ-KFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTSTIEVTDNL-KAL 271

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A I+G M    +E ++D F++    +L+AT V+  GID+   S +I  +  +    
Sbjct: 272 GYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPNDTDT 331

Query: 575 QLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTR 607
            +H++ GR GR G E +S  L+   PL +  + R
Sbjct: 332 YVHRI-GRTGRAGREGTSISLV---PLKEMRFLR 361


>gi|296194575|ref|XP_002745046.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Callithrix jacchus]
          Length = 704

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 140/344 (40%), Gaps = 78/344 (22%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+ + A +   G            + +I+AP   L  Q Y   +K++  T 
Sbjct: 314 TGSGKTAAFLLPILAHMMRDGVTASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTC 373

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   +I G     H   ++ +I  G  +I+  T     D I   K+ L     +++DE  
Sbjct: 374 VRAVVIYGGTQLGH---SIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQIKYLVLDEAD 429

Query: 405 R-----FG--------------VQQRLKLTQKATAPH-VLLMTATPIPRTLVLTSLGDID 444
           R     FG               +QR  L   AT P  +  + A  +    +  ++G + 
Sbjct: 430 RMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQV- 488

Query: 445 ISKITEKPAGRKPIKTV--IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
                   A R   +TV  +   ++ ++++E L+ +  E    +     +E KK+++F  
Sbjct: 489 ------GGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVF-----VETKKKADF-- 535

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +  F    +  T+SI   HG     ++E  +  F++G C +L+AT+V   G+D      
Sbjct: 536 -IATFLCQEKISTTSI---HGDREQREREQALGDFRSGKCPVLVATSVAARGLD------ 585

Query: 563 IIIENAEH---FGLAQ-----LHQLRGRVGRGEEISSCILLYHP 598
             IEN +H   F L       +H++ GR GR       I  + P
Sbjct: 586 --IENVQHVINFDLPSTIDEYVHRI-GRTGRCGNTGRAISFFDP 626


>gi|291240646|ref|XP_002740231.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked-like
           [Saccoglossus kowalevskii]
          Length = 694

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 71/349 (20%), Positives = 144/349 (41%), Gaps = 70/349 (20%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKTLVALIAMA 315
           G+I Q  ++N  ++ PT  Q+ A+  I        R+ R L      GSGKT   L+ + 
Sbjct: 238 GEIIQSNIKNSTYARPTPVQKYALPII--------RLKRDLMACAQTGSGKTAAFLLPIL 289

Query: 316 AAVEAGGQA----------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           + +   G                  +++AP   LA Q Y+  +K++  + +   ++ G  
Sbjct: 290 SQIYENGPGKIPESRYARRKHFPLGLVLAPTRELASQIYDEARKFSYRSHVRPCVVYGGA 349

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQR 411
               + + L+R      H+++ T     D ++  K+ L     V++DE  R    G + +
Sbjct: 350 DVGGQMRELDR----GCHLLVATPGRLVDMMERGKIGLDQIKWVVLDEADRMLDMGFEPQ 405

Query: 412 LKL-----TQKATAPHVLLMTATPIPRTL-----------VLTSLGDIDISKITEKPAGR 455
           ++      T   T    +LM +   P+ +           +  ++G +  + +       
Sbjct: 406 IRRIVEQDTMPKTGERQMLMFSATFPKEIQILARDFLDNYIFLAVGRVGSTSVN------ 459

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             I   ++ ++  D+    L ++ + G  +  +   +E KK ++    +E F     H  
Sbjct: 460 --ITQKVVWVDENDKRSFLLDLLSATGSDSLTLV-FVETKKGAD---SLEDFLYRDGHRA 513

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +SI   HG  S  ++E  + SF+ G   +L+AT V   G+D+ +   +I
Sbjct: 514 TSI---HGDRSQREREEALRSFRTGQTPILVATAVAARGLDIPNVKHVI 559


>gi|228920836|ref|ZP_04084175.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838767|gb|EEM84069.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 389

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 148/346 (42%), Gaps = 48/346 (13%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           T+ Q+ AI  IL  QD+        I +   G+GKTL  L+ +   +       Q V++A
Sbjct: 22  TEIQKQAIPTILEGQDV--------IAESPTGTGKTLAYLLPLLHKINPEVKQPQVVVLA 73

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L  Q +E ++K+T  T+I    + G    A  ++ +E++      +I+G+     +
Sbjct: 74  PTRELVMQIHEEVQKFTAGTEISGASLIGG---ADIKRQVEKLKK-HPRVIVGSPGRILE 129

Query: 389 SIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            I+  KL +     ++ DE  +   Q+ +   Q        ++ +T   R LV  S    
Sbjct: 130 LIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQD-------VIKSTMRDRQLVFFS---A 179

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWI--CPQIEEKKESN 499
            ++K  E  A    ++  ++ + R +   ++E   ++    +K  ++     + + K   
Sbjct: 180 TMTKAAEDAARDLAVEPQLVRVTRAESKSLVEHTYIICERREKNDYVRRIMHMGDVKAVA 239

Query: 500 FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F +   R + + E         A +H   S  ++E+ M +F+ G  ++L+AT +   GID
Sbjct: 240 FLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKVEILLATDIAARGID 299

Query: 557 VVDASIIIIENAEHFGLA----QLHQLRGRVGRGEEISSCILLYHP 598
           + D + +I     H  L     Q     GR GR  +  + + L  P
Sbjct: 300 IDDLTHVI-----HLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTP 340


>gi|227890278|ref|ZP_04008083.1| primosomal replication protein n [Lactobacillus johnsonii ATCC
           33200]
 gi|227849092|gb|EEJ59178.1| primosomal replication protein n [Lactobacillus johnsonii ATCC
           33200]
          Length = 798

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 7/135 (5%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q  A+  I   + +K     +L+G  GSGKT V L A++ A+E    A+++ P I +  Q
Sbjct: 266 QLDALNSIGTSIKEKEAKTFLLEGITGSGKTEVYLHAISTALEQKRNALMLVPEISLTPQ 325

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
              +  +++  N    V ++   + +  +     RI  G+A +++G  +     ++   +
Sbjct: 326 MVKQVKERFGDN----VAVLHSGLSEGEKYDEWRRIRRGEAQVVVGARSAIFAPLK--NI 379

Query: 396 ILVIVDEQHRFGVQQ 410
            L+++DE+H    +Q
Sbjct: 380 GLIVIDEEHESSYKQ 394


>gi|167644212|ref|YP_001681875.1| primosome assembly protein PriA [Caulobacter sp. K31]
 gi|167346642|gb|ABZ69377.1| primosomal protein N' [Caulobacter sp. K31]
          Length = 724

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 12/148 (8%)

Query: 268 NIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKTLVAL--IAMAAAVEAGGQA 324
           ++P       + A  D+L +M +       +L G  GSGKT V L  +A A A +   Q 
Sbjct: 184 SLPPQTLNPSQQASADVLAEMLAAGGFQAALLDGVTGSGKTEVYLEAVAAALAADEHSQV 243

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQII-VEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +I+ P   L Q     I ++ Q   +  VE  +G  P   RR+A E +A GQA I++G  
Sbjct: 244 LILLPEIALTQA---VIARFEQRFGVAPVEWHSGVSPP-KRRRAWEGVATGQARIVVGAR 299

Query: 384 -ALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            ALF   + +  L LV+VDE+H    +Q
Sbjct: 300 SALF---LPFKALRLVVVDEEHDGSFKQ 324


>gi|297161036|gb|ADI10748.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 433

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 127/315 (40%), Gaps = 33/315 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   + L+A  A   A  +   A+I+ P   LAQQ  E +  Y +  ++ +
Sbjct: 33  RGRTGSGKTLAFGLPLLARTAGRRAEPKQPLALILVPTRELAQQVTEALAPYAEALRLRM 92

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFG 407
             + G M    +  AL    HG A +++ T     D I+       ++ + ++DE     
Sbjct: 93  ATVVGGMSIGRQAAALR---HG-AEVVVATPGRLHDLIERRACRLGRVGITVLDEAD--- 145

Query: 408 VQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                ++      PHV  +L    P  + ++ ++  D D+  +  +     P+   + P 
Sbjct: 146 -----QMCDMGFLPHVSEVLDQVHPDGQRMLFSATLDRDVDHLVRRYL-HDPVVHSVDPS 199

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--FRSVVERFNSLHEHFTSS---IAI 520
                 ++   V++  G   Y +  +I  +      F       + L  H  +S    A 
Sbjct: 200 AGAVTTMDH-HVLVVHGPDRYAVTTEIAARDGRVLLFLDTKHAVDQLTRHLRASGVHAAA 258

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +H   S   +   +  FKNG   +L+AT V   G+ V D  +++  +        +H+  
Sbjct: 259 LHSGKSQPQRTRTLAQFKNGQITVLVATNVAARGLHVDDLDLVVNVDPPTDPKDYVHRA- 317

Query: 581 GRVGRGEEISSCILL 595
           GR  R  E  S + L
Sbjct: 318 GRTARAGESGSVVTL 332


>gi|270004664|gb|EFA01112.1| hypothetical protein TcasGA2_TC010324 [Tribolium castaneum]
          Length = 574

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHFGLAQ 575
            IHG  S  +++ V+  F+ G   +L+AT V   G+DV D   +I      N+E +    
Sbjct: 407 CIHGDKSQQERDWVLQDFRTGKAPILVATDVAARGLDVEDVKFVINFDYPSNSEDY---- 462

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +H++ GR GR +   +    + P  +  +   +SVLK
Sbjct: 463 VHRI-GRTGRSQRTGTAYTFFTPANANKAADLVSVLK 498


>gi|258423399|ref|ZP_05686290.1| helicase domain-containing protein [Staphylococcus aureus A9635]
 gi|257846460|gb|EEV70483.1| helicase domain-containing protein [Staphylococcus aureus A9635]
          Length = 360

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 154/359 (42%), Gaps = 66/359 (18%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++ F  ++ Q  A + I++ +  +  +L  L    G+GKT +    +  A   G    I+
Sbjct: 22  HLSFELSEQQSYASEHIVRAIRMRQTIL--LYAVTGAGKTEMMFQGIQYARRQGDNIAIV 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA------HIIIG 381
           +P                    ++VEI +  +  A   + ++ I H Q+      H ++ 
Sbjct: 80  SP-----------------RVDVVVEI-SKRIKDAFLNEDID-ILHQQSSQQFEGHFVVC 120

Query: 382 T-HALFQDSIQYYKLILVIVDEQHRF------GVQQRLKLTQKATAPHVLLMTATPIPRT 434
           T H L++   Q++  I +  DE   F       +QQ LK + K      + MTATP P+ 
Sbjct: 121 TVHQLYRFK-QHFDTIFI--DEVDAFPLSMDKSLQQALKSSTKVEHA-TIYMTATP-PKQ 175

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L    L +I    I + PA R   K++ IP  R  ++            K   +  +I +
Sbjct: 176 L----LSEIPHENIIKLPA-RFHKKSLPIPKYRYFKL---------NNNKIQKMLYRILQ 221

Query: 495 KKESNFRSVVERFN---------SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            + SN R  +  FN         S+++   + +  +H    D+ +   ++  +NG   ++
Sbjct: 222 DQISNQRYTLVFFNNIETMIKTFSVYKQKITKLTYVHS--EDVFRFEKVEQLRNGHFDVI 279

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI-SSCILLYHPPLSKN 603
             TT++E G  + +  +++I+ A  +    L Q+ GRVGR  E  +  +L +H  +S N
Sbjct: 280 FTTTILERGFTMANLDVVVID-AHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMN 337


>gi|168703148|ref|ZP_02735425.1| primosomal protein N [Gemmata obscuriglobus UQM 2246]
          Length = 800

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 8/115 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L G  GSGKT V L A+   V+ G + V++ P   L  Q     +    N    + ++ 
Sbjct: 279 LLHGVTGSGKTEVYLRAIEEVVKQGKEVVVLVPEISLTPQTISRFQGRCGN----LAVMH 334

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            ++  A R     RIA G  H+++G   A+F  +    KL L+I+DE+H    +Q
Sbjct: 335 SHLTDAERGGYWRRIATGHIHVVVGARSAVFAPT---RKLGLIIIDEEHENSFKQ 386


>gi|156552297|ref|XP_001600622.1| PREDICTED: similar to LD28101p [Nasonia vitripennis]
          Length = 782

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 110/281 (39%), Gaps = 43/281 (15%)

Query: 302 VGSGKTLVALIAM-----AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            GSGKT   LI M         + G +A+I++P   LA Q   FIK+  + T +   +I 
Sbjct: 84  TGSGKTACFLIPMFEKLKTRQAKTGARALILSPTRELALQTQRFIKEIGRFTGLKSSVIL 143

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHR-----F 406
           G     ++  A+    HG   II+ T     H   +  +    +  VI DE  R     F
Sbjct: 144 GGDSMDNQFSAI----HGNPDIIVATPGRFLHICIEMDMNLKSIEFVIFDEADRLFEMGF 199

Query: 407 GVQ----------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           G Q           R  L   AT P VL+  AT   R  VL  L D++ SK+   P   K
Sbjct: 200 GEQIHEIANRLPKNRQTLLFSATLPKVLVEFATAGLRNPVLVRL-DVE-SKL---PDELK 254

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
                  P  ++  ++  LK V+  G +       +           VE  + + +    
Sbjct: 255 LCFITCRPEEKLAVLMCLLKQVIKPGAQTVIFAATMHH---------VEYIHQILDQAGI 305

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
               I+  +    ++     F+NG  K+L+ T V   GID+
Sbjct: 306 LNTFIYSNLDPSARKINAAKFQNGKVKVLVVTDVAARGIDI 346


>gi|152984073|ref|YP_001351106.1| primosome assembly protein PriA [Pseudomonas aeruginosa PA7]
 gi|150959231|gb|ABR81256.1| primosomal protein N' [Pseudomonas aeruginosa PA7]
          Length = 739

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 21/178 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   + AG QA+++ P I +  Q    F +++     ++   +
Sbjct: 225 LLAGVTGSGKTEVYLQLIRETLAAGRQALVLIPEINLGPQTLARFERRFNARIALLHSAL 284

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           T       R  A      G+A I+IGT  ALF       +  L+IVDE+H    +Q+  L
Sbjct: 285 TDR----ERLDAWLAARDGEADIVIGTRSALF---TPLKRPGLIIVDEEHDASYKQQDGL 337

Query: 415 TQKA-----------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              A             P +LL +ATP   +L     G   + ++T++  G +P K +
Sbjct: 338 RYHARDLALVRARLENVP-ILLGSATPALESLHNAQAGRYGLLRLTQRAGGAQPPKFI 394


>gi|329667062|gb|AEB93010.1| primosomal protein N' [Lactobacillus johnsonii DPC 6026]
          Length = 798

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 7/135 (5%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q  A+  I   + +K     +L+G  GSGKT V L A++ A+E    A+++ P I +  Q
Sbjct: 266 QLDALNSIGTSIKEKEAKTFLLEGITGSGKTEVYLHAISTALEQKRNALMLVPEISLTPQ 325

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
              +  +++  N    V ++   + +  +     RI  G+A +++G  +     ++   +
Sbjct: 326 MVKQVKERFGDN----VAVLHSGLSEGEKYDEWRRIRRGEAQVVVGARSAIFAPLK--NI 379

Query: 396 ILVIVDEQHRFGVQQ 410
            L+++DE+H    +Q
Sbjct: 380 GLIVIDEEHESSYKQ 394


>gi|326523907|dbj|BAJ96964.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 126/314 (40%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+I+AP   LAQQ  + ++       + V 
Sbjct: 82  IQQAQSGTGKTATFCSGILQQLDYGLVECQALILAPTRELAQQIEKVMRALGDYLGVKVH 141

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 142 ACVGGTSV----REDQRILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMF--VLDEADEM 195

Query: 404 HRFGVQQRL-KLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++  + Q       V + +AT  P  L +T        K   KP        V
Sbjct: 196 LSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITR-------KFMNKP--------V 240

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 241 RILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKM 300

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 301 RGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 360

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 361 PENYLHRI-GRSGR 373


>gi|323172286|gb|EFZ57923.1| ATP-independent RNA helicase dbpA [Escherichia coli LT-68]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 128/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  + + +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLRFSATWPEAIAVISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|292670577|ref|ZP_06604003.1| DNA replication factor Y [Selenomonas noxia ATCC 43541]
 gi|292647743|gb|EFF65715.1| DNA replication factor Y [Selenomonas noxia ATCC 43541]
          Length = 804

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 14/197 (7%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T +Q SA+ ++   ++Q      +L G  GSGKT V +    A   AG Q V++ P I +
Sbjct: 274 TAAQTSAVAELHTAIAQGGFQGCLLHGVTGSGKTRVYIETARAVRAAGRQVVVLVPEIAL 333

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F + +  +    + ++   +  A R  A+ R+  G+A IIIG   ALF  +  
Sbjct: 334 TGQLITAFQEVFAGD----IVVLHSQLSVAERNDAIFRVRRGEAGIIIGARSALFTPAGN 389

Query: 392 YYKLIL-------VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              +IL          DE  R+  +   ++  +     ++L +ATP   +      G++ 
Sbjct: 390 IGCIILDEEQDMSYKQDESPRYHARVVAEILARRYGALLVLGSATPSLESYARAQAGELM 449

Query: 445 ISKITEKPAGRKPIKTV 461
           +  + E+  GR+P+  V
Sbjct: 450 LLTLPER-IGRQPLPHV 465


>gi|260772029|ref|ZP_05880946.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio metschnikovii CIP 69.14]
 gi|260612896|gb|EEX38098.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio metschnikovii CIP 69.14]
          Length = 733

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 24/202 (11%)

Query: 221 TSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIPINVEGKIAQKILRNIPFSP 273
             P   +   DE ++      L+ KQ+        + +  P +VE ++ +         P
Sbjct: 148 AGPVSHQTMLDEAVSSSTLNTLLDKQWIEVLEQAPQIVPWPSDVEARVDK---------P 198

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
             + E AI  I    SQ      +LQG  GSGKT V L  +   +E G QA+++ P IG+
Sbjct: 199 KLNPEQAIA-IATVNSQPGFGCYLLQGVTGSGKTEVYLNLIKPVLEQGKQALVLVPEIGL 257

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
             Q     I+++ Q   + V +I   +    R  A        A IIIGT +       +
Sbjct: 258 TPQT----IQRFRQRFTVPVVVIHSGLNDTERLNAWLAARDKAAGIIIGTRSALLTP--F 311

Query: 393 YKLILVIVDEQHRFGVQQRLKL 414
             L ++IVDE+H    +Q+  L
Sbjct: 312 ADLGIIIVDEEHDTSYKQQDSL 333


>gi|221105444|ref|XP_002161749.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 1335

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            +HG M   D++S +  FKNG  KL+++T+V   G+DV +  +++  +  +     +H++ 
Sbjct: 950  LHGGMDQFDRDSTIADFKNGVTKLMVSTSVAARGLDVKNLVLVLNYDCPNHYEDYVHRV- 1008

Query: 581  GRVGRGEEISSCILLYHPPLSKNS 604
            GR GR     +      P   +N+
Sbjct: 1009 GRTGRAGNKGTSFTFITPEQGRNA 1032


>gi|168241214|ref|ZP_02666146.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194447332|ref|YP_002045697.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194405636|gb|ACF65855.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205339660|gb|EDZ26424.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 137/326 (42%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI------ 399
              + G  P   +R +L+       HII+ T     D +Q   +      ILV+      
Sbjct: 105 T--LCGGQPFGVQRDSLQH----APHIIVATPGRLLDHLQKETVSLDALHILVMDEADRM 158

Query: 400 --------VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                   +DE  RF    R  L   AT P  +   +  + +  +      I+I  +   
Sbjct: 159 LDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPI-----RIEIDTVDAL 213

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           PA  +             E I  L+ +LS+ + A  +   +    + + ++V +  N++ 
Sbjct: 214 PAIEQQFFE-----TSAHEKISLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALNAVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 Q---SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELVVNYELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFC 345


>gi|91210637|ref|YP_540623.1| ATP-dependent RNA helicase DbpA [Escherichia coli UTI89]
 gi|117623595|ref|YP_852508.1| ATP-dependent RNA helicase DbpA [Escherichia coli APEC O1]
 gi|218558330|ref|YP_002391243.1| ATP-dependent RNA helicase DbpA [Escherichia coli S88]
 gi|237705373|ref|ZP_04535854.1| ATP-independent RNA helicase DbpA [Escherichia sp. 3_2_53FAA]
 gi|91072211|gb|ABE07092.1| ATP-independent RNA helicase DbpA [Escherichia coli UTI89]
 gi|115512719|gb|ABJ00794.1| ATP-independent RNA helicase DbpA [Escherichia coli APEC O1]
 gi|218365099|emb|CAR02806.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           S88]
 gi|226900130|gb|EEH86389.1| ATP-independent RNA helicase DbpA [Escherichia sp. 3_2_53FAA]
 gi|294490917|gb|ADE89673.1| ATP-independent RNA helicase DbpA [Escherichia coli IHE3034]
 gi|307627083|gb|ADN71387.1| ATP-dependent RNA helicase DbpA [Escherichia coli UM146]
 gi|323949054|gb|EGB44946.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323956904|gb|EGB52636.1| DEAD/DEAH box helicase [Escherichia coli H263]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 138/350 (39%), Gaps = 62/350 (17%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           T  Q++A+  IL       + +R+ Q   GSGKT    + +   ++A     QA+++ P 
Sbjct: 27  TPVQDAALPAIL-----AGKDVRV-QAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPT 80

Query: 331 GILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             LA Q       + ++  NT+I+   + G  P   +R +L+       HII+ T     
Sbjct: 81  RELADQVAGELRRLARFLPNTKILT--LCGGQPFGMQRDSLQH----APHIIVATPGRLL 134

Query: 388 DSIQYYKLIL-----VIVDEQHR---------------FGVQQRLKLTQKATAPHVLLMT 427
           D +Q   + L     +++DE  R               F    R  L   AT P  +   
Sbjct: 135 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 194

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           +  + R  +   +   D     E+       K  I  + R+        + L +      
Sbjct: 195 SGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRL--------LSLHQPSSCVV 246

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C       + + +SV +  N + +   S    +HG +   D++  +  F NG+ ++L+A
Sbjct: 247 FC-----NTKKDCQSVCDVLNEVGQSALS----LHGDLEQRDRDQTLVRFANGSARVLVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
           T V   G+D+   S+ ++ N E     ++H  R GR  R    G  IS C
Sbjct: 298 TDVAARGLDI--KSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|75674512|ref|YP_316933.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
 gi|74419382|gb|ABA03581.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
          Length = 476

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 122/288 (42%), Gaps = 35/288 (12%)

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   L+ Q  E    Y ++ ++   +  G +P   + +A   + HG   +++ T  
Sbjct: 85  LVLSPTRELSGQILENFNAYGRHLRLTSALAIGGVPMGRQVRA---VMHG-VEVMVATPG 140

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRF---G-VQQRLKLTQKATAPHVLLMTATPIPRTL 435
              D +Q   L L     +++DE  R    G +    K+  K  A    L  +  +P+  
Sbjct: 141 RLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVVAKLPAKRQTLFFSATMPK-- 198

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEE 494
                   DI+++  +   R P +  + P++  +D + +R+  V   GK A+    Q+ +
Sbjct: 199 --------DIAELANQML-RDPARVAVTPVSSTVDRITQRIIQVDHAGKAAFLA--QLLK 247

Query: 495 KKESNFRSVVERFNSLHEHFTSSIA-------IIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           ++  N   +  R     +    S+A        IHG  S   +E V+  F+ G  + L+A
Sbjct: 248 QEPVNRALIFTRTKHGADKVVKSLAKSGIRSNAIHGNKSQNHRERVLAEFRAGEIRTLVA 307

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           T +   GIDV   S ++  +  +     +H++ GR  R     + I L
Sbjct: 308 TDIAARGIDVDGISHVVNFDLPNVPETYVHRI-GRTARAGTDGAAISL 354


>gi|42519413|ref|NP_965343.1| primosomal protein N' [Lactobacillus johnsonii NCC 533]
 gi|41583701|gb|AAS09309.1| primosomal protein N' [Lactobacillus johnsonii NCC 533]
          Length = 798

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 7/135 (5%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q  A+  I   + +K     +L+G  GSGKT V L A++ A+E    A+++ P I +  Q
Sbjct: 266 QLDALNSIGTSIKEKEAKTFLLEGITGSGKTEVYLHAISTALEQKRNALMLVPEISLTPQ 325

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
              +  +++  N    V ++   + +  +     RI  G+A +++G  +     ++   +
Sbjct: 326 MVKQVKERFGDN----VAVLHSGLSEGEKYDEWRRIRRGEAQVVVGARSAIFAPLK--NI 379

Query: 396 ILVIVDEQHRFGVQQ 410
            L+++DE+H    +Q
Sbjct: 380 GLIVIDEEHESSYKQ 394


>gi|300855475|ref|YP_003780459.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300435590|gb|ADK15357.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 369

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 147/347 (42%), Gaps = 51/347 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT  Q+ +IK I +          I +   G+GKTL  L+ +   +       QA+I+ P
Sbjct: 24  PTPIQQESIKFIREGKDV------IAEAQTGTGKTLAFLLPIFENISPNINSTQALIVTP 77

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA----- 384
              LA Q  E   K  +   I +    G      + K L+R      H+II T       
Sbjct: 78  TRELAIQITEEALKLKKAKDINILAAYGGKDIGSQLKKLKR----NIHLIIATPGRLLDH 133

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L + +I   KL  +++DE       Q L +  K     ++    +   +TL  ++  + D
Sbjct: 134 LHRKTIDLSKLKTLVLDE-----ADQMLLMGFKNDVEDII-KEVSKKRQTLCFSATMNSD 187

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLK---VVLSEGKKAYWICPQIEEKKESNFR 501
           + K+    A R     +++ I +    +  +K   +  ++ KK   +C  I++  ++ F 
Sbjct: 188 VKKL----AYRYMTDPLVVSIKKEKVTLNNIKQYVIETTDRKKQDALCNIIDQ--DNPFM 241

Query: 502 SVV-----ERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           +++      R + L         +   +H  +    +E +M SF+N   + LIAT V   
Sbjct: 242 AIIFCRTKRRVDDLEIALYQRGYNCKKLHSDIPQSKRERIMKSFRNADIQYLIATDVAAR 301

Query: 554 GIDVVDASII----IIENAEHFGLAQLHQLRGRVGR-GEEISSCILL 595
           G+D+   + I    I EN E +    +H++ GR GR GEE  +C+ +
Sbjct: 302 GLDISGVTHIYNYDIPENVESY----IHRI-GRTGRAGEEGCTCLFV 343


>gi|302691820|ref|XP_003035589.1| hypothetical protein SCHCODRAFT_65225 [Schizophyllum commune H4-8]
 gi|300109285|gb|EFJ00687.1| hypothetical protein SCHCODRAFT_65225 [Schizophyllum commune H4-8]
          Length = 397

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 123/300 (41%), Gaps = 60/300 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++    G QA+I+AP   LAQQ  + +        I   
Sbjct: 65  IAQAQSGTGKTATFSISILQQLDMSIKGTQALILAPTRELAQQIQKVVIALGDYMNIECH 124

Query: 354 IITGNMPQAHRRKALERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
              G          L+   H      G+ H +I   AL  D+I+ +   L   DE    G
Sbjct: 125 ACVGGTVVREDIAKLQEGVHVVVGTPGRVHDMINRRALRTDNIKIF--CLDEADEMLSRG 182

Query: 408 VQQRLK-----LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            + ++      L Q      V+L++AT     L +T            K   R+P++ ++
Sbjct: 183 FKDQIYEVFQLLPQDI---QVVLLSATMPAEVLEVT------------KKFMREPVRILV 227

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------RF 507
                     +R ++ L EG K ++I  + EE K      + E               + 
Sbjct: 228 ----------KRDELTL-EGIKQFYIAVEREEWKLDTLCDLYETVTITQAVIFCNTRRKV 276

Query: 508 NSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           + L E   +   +++ +HG M    +E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 277 DWLTEKMHAREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLITTDLLARGIDVQQVSLVI 336


>gi|296102188|ref|YP_003612334.1| ATP-dependent RNA helicase DbpA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056647|gb|ADF61385.1| ATP-dependent RNA helicase DbpA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 148/350 (42%), Gaps = 62/350 (17%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           T  Q +A+  IL+      R +R+ Q   GSGKT    + +   ++A     Q++++ P 
Sbjct: 27  TPVQAAALPAILE-----GRDVRV-QAKTGSGKTAAFGLGLLQHIDATLLQTQSLVLCPT 80

Query: 331 GILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             LA Q       + ++  NT+I+   + G  P   +R +L+   H    II+ T     
Sbjct: 81  RELADQVAGELRRLARFLPNTKILT--LCGGQPFGAQRDSLQHAPH----IIVATPGRLL 134

Query: 388 DSIQYYKL------ILVI--------------VDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           D +Q   +       LV+              +DE  RF  + R  L   AT P  +   
Sbjct: 135 DHLQKSTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPEDRQTLLFSATWPDAIAAI 194

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           +  + +  +      I+I  +   PA    I+      ++  + I  L+ +LS+ + A  
Sbjct: 195 SGRVQKNPLT-----IEIDSVDALPA----IEQQFFETSQQGK-IPLLQKLLSQHQPASC 244

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +   +    + + ++V +  N+  +   S    +HG +   D++  +  F NG+ ++L+A
Sbjct: 245 V---VFCNTKKDCQAVCDALNAAGQSALS----LHGDLEQRDRDQTLVRFANGSARVLVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
           T V   G+D+   S+ ++ N E     ++H  R GR  R    G  IS C
Sbjct: 298 TDVAARGLDI--KSLELVVNYELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|290890826|ref|ZP_06553893.1| hypothetical protein AWRIB429_1283 [Oenococcus oeni AWRIB429]
 gi|290479598|gb|EFD88255.1| hypothetical protein AWRIB429_1283 [Oenococcus oeni AWRIB429]
          Length = 454

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 150/360 (41%), Gaps = 44/360 (12%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG- 321
           K +  I F+ PTK Q+  I  I+           + Q   GSGKT   L+ +   ++   
Sbjct: 16  KAIDGISFNKPTKVQKRIIPPIIAGRDV------VGQSQTGSGKTHAFLLPIFNGLDPSL 69

Query: 322 --GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-----ITGNMPQAHRRKALERIAHG 374
              QAVI +P   LA+Q Y+  + + ++   I E      I   +    R K + ++   
Sbjct: 70  EETQAVITSPSRELAEQLYQAFRDFQKSLAAIDENFADLRIADYIGGTDRNKQIRQLERK 129

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           Q  I IGT    +D +    L++     Q+RF V     +         +   A+ +P  
Sbjct: 130 QPQIAIGTPGRLKDFLSKNFLLV----NQNRFFVVDEADMALDMGFLEDVDTIASAMPDN 185

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVII---PINRI-DEVIERLKVVLSEGKKAYWICP 490
           L +         K+T  P  ++ +K  +I   P++ +  + I+   ++ ++ K    +  
Sbjct: 186 LQMLVFSATIPDKLT--PFLKRYMKNPLIEEIPVSTVVADTIDNY-LLATKSKDKNEVIF 242

Query: 491 QIEEKKESN----FRSVVERFNSLHEHFTSS----IAIIHGRMSDIDKESVMDSFKNGTC 542
            +  +KES     F +  ER + L  HF  S     A +HG +   ++   M   K    
Sbjct: 243 DLLTRKESYLTLVFANTKERVHELA-HFLDSQGLKAAEVHGGIEPRERRRTMKRIKKQEF 301

Query: 543 KLLIATTVIEVGIDVVDASIIIIE----NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + ++AT +   G+D+   S +I +    + E F    +H++ GR GR     + I LY P
Sbjct: 302 QYVVATDLAARGLDIQGVSEVINDDIPTDLEFF----IHRV-GRTGRNGLPGTAITLYGP 356


>gi|283476610|emb|CAY72438.1| Primosomal protein N' [Erwinia pyrifoliae DSM 12163]
          Length = 771

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   + +G QA+++ P IG+  Q     I +++Q     V+++
Sbjct: 260 LLAGITGSGKTEVYLSVLENVLASGHQALVLVPEIGLTPQT----IARFSQRFNAPVDVL 315

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   G+  I+IGT  ALF     + +L  +++DE+H    +Q+
Sbjct: 316 HSALNDSERLAVWLRARSGETAIVIGTRSALF---TPFARLGAIVIDEEHDSSYKQQ 369


>gi|229181700|ref|ZP_04309023.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 172560W]
 gi|228601733|gb|EEK59231.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 172560W]
          Length = 481

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 134/324 (41%), Gaps = 42/324 (12%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGV 408
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEM-- 158

Query: 409 QQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRK---PIKTVIIP 464
              +    +  A    ++   P  R T++ ++    D+ K++           IK   I 
Sbjct: 159 -LNMGFIDQVEA----IIDELPKKRMTMLFSATLPEDVEKLSRTYMNSPIHIEIKAAGIT 213

Query: 465 INRID----EVIERLKVVLS------EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            ++I+    EVIE  K+ L       E   +  I  + +E  +  +R + +R N   +  
Sbjct: 214 TDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-KRANYPCDK- 271

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      +
Sbjct: 272 ------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKES 325

Query: 575 QLHQLRGRVGRGEEISSCILLYHP 598
            +H+  GR GR       I    P
Sbjct: 326 YVHRT-GRTGRAGNSGKAITFITP 348


>gi|154342919|ref|XP_001567405.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134064737|emb|CAM42842.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 604

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 76/373 (20%), Positives = 159/373 (42%), Gaps = 60/373 (16%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-------- 312
           +A+ + R     PT  Q+  I  +L+       ++   Q   GSGKT   LI        
Sbjct: 136 LAENVSRCRYQKPTPVQKYGIPCVLKGSD----LMACAQ--TGSGKTAAYLIPAINFMLV 189

Query: 313 -----AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
                A     ++   A++++P   L+ Q YE  +K+T  T I   ++ G     H+   
Sbjct: 190 NNLNRAKPTNSQSAPSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRHQIHE 249

Query: 368 LERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRF---GVQQRLKLTQKAT 419
           L R       +++ T     D       +Y  +  +++DE  R    G + +++   +  
Sbjct: 250 LTR----GCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGP 305

Query: 420 APHVLLMTATPIP---RTLVLTSLGDIDISKITEK--------PAGR--KPIKTVIIPIN 466
                  +  P P   +TL+ ++    +I ++  +          GR     + +   + 
Sbjct: 306 D------SDMPPPGERQTLLYSATFPKEIQQMAREFLYRHYFLQVGRVGSTTENITQDVR 359

Query: 467 RIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
            ++++ +R  L  VL E  +   +   +E+K+++++   +ER+        SSI   HG 
Sbjct: 360 WVEDMDKRGCLLEVLKE-HQGERVLVFVEKKRDADY---LERYLRQSRIPCSSI---HGD 412

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
               ++E  +D FK+G C++L+AT V   G+D+ + ++++  +        +H++ GR G
Sbjct: 413 RVQREREEALDIFKSGVCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRI-GRTG 471

Query: 585 RGEEISSCILLYH 597
           R  +  + I  ++
Sbjct: 472 RAGKRGTAISFFN 484


>gi|153006338|ref|YP_001380663.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029911|gb|ABS27679.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 455

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 127/301 (42%), Gaps = 37/301 (12%)

Query: 302 VGSGKTLVALIAM--AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            G+GKT   L+ +    A + G +A+++AP   LA Q  E ++++    ++   +I G +
Sbjct: 50  TGTGKTAAFLLPLIDRLAGKPGTRALVLAPTRELALQIGEELERFGHARRVRGAVIIGGV 109

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQQR 411
             A + +AL +    +  I+I T     D ++     L     +++DE  R    G + +
Sbjct: 110 GMAQQAEALRQ----KREIVIATPGRLVDHLEQGNARLDGIEALVLDEADRMLDMGFKPQ 165

Query: 412 LK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L   L +       LL +AT      +   + D   + +      R P++  +       
Sbjct: 166 LDRILRRLPKQRQTLLFSAT------MAGEVADFARAHL------RDPVRVEVARSGTTA 213

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESN--FRSVVERFNSLHEHFTSS---IAIIHGR 524
              E+   +  + +K   +   +E   +S   F     R + + +H   +   +A IH  
Sbjct: 214 ARAEQQVFLADQHEKLPLLLTLLERDGDSTLIFTRTKRRADKIWKHIGRAGHKVARIHAD 273

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
            S   +   +D FK+GT ++L+AT +   GIDV +   ++  +  H     +H    RVG
Sbjct: 274 RSQAQRRMALDGFKDGTYRVLVATDIAARGIDVAEIGHVVNFDLPHVPEDYVH----RVG 329

Query: 585 R 585
           R
Sbjct: 330 R 330


>gi|95102876|gb|ABF51379.1| eukaryotic translation initiation factor 4A [Bombyx mori]
          Length = 420

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 52/296 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +     +      
Sbjct: 88  IAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 147

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRFGV 408
              G     + R+ + ++  G  H+++GT     D I    L      L ++DE      
Sbjct: 148 ACIGG---TNVREDIRQLESG-VHVVVGTPGRVYDMITRRALHANTIKLFVLDE-----A 198

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            + L    K     V  M +  +   L+  ++ D D+ +++ +   R P++ ++      
Sbjct: 199 DEMLSRGFKDQIHDVFKMLSADVQVILLSATMPD-DVLEVS-RCFMRDPVRILV------ 250

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKE------------------SNFRSVVERFN-S 509
               ++ ++ L EG K ++I  ++EE K                    N R  V+    S
Sbjct: 251 ----QKEELTL-EGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTES 305

Query: 510 LH-EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +H   FT  ++ +HG M   ++E +M  F+ G+ ++LI T ++  GIDV   S +I
Sbjct: 306 MHLRDFT--VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 359


>gi|119180054|ref|XP_001241534.1| hypothetical protein CIMG_08697 [Coccidioides immitis RS]
          Length = 1150

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 144/355 (40%), Gaps = 53/355 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA--PIGILAQ---QHYEFIKKYTQNTQ-I 350
           I+     SGK+L+  + M   +E   Q+  M   P   LAQ   ++ E + +Y +  +  
Sbjct: 375 IVSTSTSSGKSLIYQVPMLCELEKDSQSRGMYIFPTKALAQDQRRNMEELMQYMEGLEYT 434

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYK-LILVIVD 401
           +VE   G+ P   RR A+      +A II     +   +I         + K L LV+VD
Sbjct: 435 MVETFDGDTPM-ERRNAI----RDEARIIFTNPDMLHITILPQESSWRTFLKNLKLVVVD 489

Query: 402 EQHRFG---------VQQRLKLTQKATAPHVL------LMTATPIPRTLVLTSLGDIDIS 446
           E H +          + +RL+    +   H +         A P      +  +  + ++
Sbjct: 490 ELHVYNGLFGSHVAYIMRRLRRICASLGNHSVRFVSCSATVANPEQHMKTIFGVNKVKLT 549

Query: 447 KITEKPAGRK-------PIKTVIIPIN-RIDEVIERLKVVLS---EGKKAYWICPQIEEK 495
                PAGRK       P K    P + R + ++E  ++       G +    C +I ++
Sbjct: 550 DFDGSPAGRKEFICWNTPFKDPGDPSSGRGNCLLESARLFCQLILRGVRVIAFC-RIRKQ 608

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIH-GRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            E    +V + F +L     +   + + G  S  D+  +      G    ++AT+ +E+G
Sbjct: 609 CEFLLSAVRDEFRALDRSSVAKFVMGYRGGYSPQDRRQIEREMFEGKLLGIVATSALELG 668

Query: 555 IDV--VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           +D+  +DA   +I +   F ++ L Q  GR GR  + S  IL+     +   Y R
Sbjct: 669 VDIGSLDA---VISHGFPFSISNLRQQSGRAGRRNKDSLSILVGDSYATDQHYMR 720


>gi|27366603|ref|NP_762130.1| cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
 gi|37676317|ref|NP_936713.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|320158491|ref|YP_004190869.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
 gi|27358169|gb|AAO07120.1| Cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
 gi|37200858|dbj|BAC96683.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|319933803|gb|ADV88666.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
          Length = 641

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 136/335 (40%), Gaps = 25/335 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           SPT  Q +AI  +LQ +        + +   G+GKT    + L+      +   QA+++A
Sbjct: 28  SPTPIQAAAIPHLLQGVDA------LGKAQTGTGKTAAFSLPLLNKLDLAQRKPQAIVLA 81

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   QN + + V  I G      + +AL+      AH+I+GT    Q
Sbjct: 82  PTRELAIQVAAEMKNLGQNIRGLKVLEIYGGASIVDQMRALK----NGAHVIVGTPGRVQ 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL-LMTATPIPRTLVLTSLGDIDIS 446
           D I   +L L    E H F + +  ++        V  +M   P     VL S     + 
Sbjct: 138 DLINRERLDL---GEVHTFVLDEADEMLNMGFVDDVTEIMEHAPSSAQRVLFSATMPPML 194

Query: 447 KITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLS-EGKKAYWICPQIEEKKES----NF 500
           K   +   R P+   +   N  +D+V ++  VV   E  +A     + EE   S      
Sbjct: 195 KNIVERFLRDPVTVDVAGKNHTVDKVAQQFWVVKGVEKDEAMSRLLETEETDASIVFVRT 254

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV   
Sbjct: 255 RQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRI 314

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           + +   +      + +H++ GR GR       ILL
Sbjct: 315 THVFNYDIPFDVESYIHRI-GRTGRAGRQGKAILL 348


>gi|322695946|gb|EFY87746.1| hypothetical protein MAC_06232 [Metarhizium acridum CQMa 102]
          Length = 699

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 32/178 (17%)

Query: 500 FRSVVERFNSLHEHFT----------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           F   ++R  +LH+             S IA +H  ++D  + S+M  F+ G   +LI T 
Sbjct: 484 FTQTIDRAMALHDELKYDIPLEAGGPSRIAALHSALADSARSSIMRKFRAGEIWVLITTD 543

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRL 608
           V+  G+D    + ++  +      A +H+  GR GR G E    + LY    +K     +
Sbjct: 544 VLARGVDFAGVNGVVNYDVPGSAAAYVHRA-GRTGRAGREGGIAVTLY----TKEDIPFV 598

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
             + N     +IA  D +  + G+     Q+G+ K+L+      D+L  + + D K +
Sbjct: 599 KTVAN-----VIAVSDKQAGRTGD-----QAGVQKWLL------DALPNVGKDDRKKL 640


>gi|269119795|ref|YP_003307972.1| primosomal protein N' [Sebaldella termitidis ATCC 33386]
 gi|268613673|gb|ACZ08041.1| primosomal protein N' [Sebaldella termitidis ATCC 33386]
          Length = 715

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 17/193 (8%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           K+ ++ +   N    +++G  GSGKT V +  +  A+++GG ++ + P   L  Q  + +
Sbjct: 196 KNTVEAIENGNNDYYLIKGITGSGKTEVYIRLIKNALKSGGGSIFLVPEISLTPQMMDRL 255

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
           K+   N    V ++   +    R++    I  G   ++IG  +     +Q   L  +I+D
Sbjct: 256 KREFSNN---VALLHSRLTTKERKEEWNAIKSGNKKVVIGARSAVFAPVQ--NLKYIILD 310

Query: 402 EQHRFGVQQR-----------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           E+H    +Q            +K         V+L +ATP   T      G I++ ++  
Sbjct: 311 EEHETTYKQESNPRYHTKNVAIKRANLLENVKVILGSATPSFDTYYQAKEGVIELLELKN 370

Query: 451 K-PAGRKPIKTVI 462
           +    +KP+  ++
Sbjct: 371 RYNDAKKPVYDLV 383


>gi|124487920|gb|ABN12043.1| putative eukaryotic translation initiation factor 4A
           [Maconellicoccus hirsutus]
          Length = 372

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 124/302 (41%), Gaps = 63/302 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFI---KKYTQNTQI 350
           I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +     + +N + 
Sbjct: 86  IAQAQSGTGKTATFSISILQQIDPSLNECQALILAPTRELAQQTQKVVLALGDFMENCKC 145

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDE 402
              I   N+     R+ + R+  G A +++GT     D I    L        +L   DE
Sbjct: 146 HACIGGTNI-----REDMRRLEEG-AQVVVGTPGRVYDMIIRKSLKIDHIKVFVLDEADE 199

Query: 403 QHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
               G ++++            V+L++AT +P+ ++  S           K   R P++ 
Sbjct: 200 MLSRGFKEQIHQVFQHLPQDVQVILLSAT-MPQDVLEVS-----------KQFMRNPVQI 247

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------------------SNFRS 502
           ++           + + +  EG K +++  + EE K                    N R 
Sbjct: 248 LV-----------KKEELTLEGIKQFYVFVEKEEWKLDTLCDLYDTLSITQAVIFCNTRR 296

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            V+           +++ +HG M   ++E +M  F+ G+ ++LI T ++  GIDV   S+
Sbjct: 297 KVDWLTDKMTKNDHTVSSMHGDMDQKEREKIMKHFRTGSSRVLITTDLLARGIDVQQVSL 356

Query: 563 II 564
           +I
Sbjct: 357 VI 358


>gi|74312285|ref|YP_310704.1| ATP-dependent RNA helicase DbpA [Shigella sonnei Ss046]
 gi|73855762|gb|AAZ88469.1| ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|323168225|gb|EFZ53911.1| ATP-independent RNA helicase dbpA [Shigella sonnei 53G]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 128/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  + + +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|73670575|ref|YP_306590.1| hypothetical protein Mbar_A3123 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397737|gb|AAZ72010.1| CRISPR-associated helicase, Cas3 family [Methanosarcina barkeri
           str. Fusaro]
          Length = 843

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT----CKLLIATTVIEVGI 555
           ++ +++ + S     T  I ++HGR    +K  + ++FK+ T     K+LI+T VIE G+
Sbjct: 320 YKKLIKEYQSKSGTDTLEIFLLHGRFRPPEKTEIFNNFKSATNKNKGKILISTQVIEAGV 379

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           D + A I+I E A    L Q     GR+ R  E    I+L+
Sbjct: 380 D-ISAHILITELAPWSSLVQRF---GRLNRYGEYDDSIVLW 416


>gi|30020240|ref|NP_831871.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|30262130|ref|NP_844507.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47527402|ref|YP_018751.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47566879|ref|ZP_00237597.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49184972|ref|YP_028224.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|49481521|ref|YP_036269.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|65319414|ref|ZP_00392373.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|118477548|ref|YP_894699.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|165870274|ref|ZP_02214930.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167632786|ref|ZP_02391112.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167638259|ref|ZP_02396536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170686363|ref|ZP_02877584.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|170706085|ref|ZP_02896547.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177650849|ref|ZP_02933746.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190567856|ref|ZP_03020767.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|196036903|ref|ZP_03104288.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196046115|ref|ZP_03113343.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|206972062|ref|ZP_03233010.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206975047|ref|ZP_03235961.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217959604|ref|YP_002338156.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|218231862|ref|YP_002366836.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|218903259|ref|YP_002451093.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|222095747|ref|YP_002529804.1| ATP-dependent RNA helicase (d-e-a-d box family) [Bacillus cereus
           Q1]
 gi|225864093|ref|YP_002749471.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227815071|ref|YP_002815080.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228914725|ref|ZP_04078334.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228927197|ref|ZP_04090260.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228933452|ref|ZP_04096305.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945743|ref|ZP_04108090.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228956133|ref|ZP_04118019.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228985230|ref|ZP_04145395.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229043887|ref|ZP_04191583.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH676]
 gi|229069681|ref|ZP_04202967.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus F65185]
 gi|229079319|ref|ZP_04211863.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus Rock4-2]
 gi|229121683|ref|ZP_04250906.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 95/8201]
 gi|229127547|ref|ZP_04256538.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-Cer4]
 gi|229138830|ref|ZP_04267411.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST26]
 gi|229144746|ref|ZP_04273145.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST24]
 gi|229150373|ref|ZP_04278590.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1550]
 gi|229178524|ref|ZP_04305889.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 172560W]
 gi|229184351|ref|ZP_04311558.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus BGSC
           6E1]
 gi|229190238|ref|ZP_04317240.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
           10876]
 gi|229196367|ref|ZP_04323115.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1293]
 gi|229600206|ref|YP_002866487.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254684699|ref|ZP_05148559.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254720956|ref|ZP_05182747.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. A1055]
 gi|254737143|ref|ZP_05194847.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743671|ref|ZP_05201356.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Kruger B]
 gi|254751458|ref|ZP_05203495.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Vollum]
 gi|254758331|ref|ZP_05210358.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Australia 94]
 gi|296502724|ref|YP_003664424.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|301053653|ref|YP_003791864.1| ATP-dependent RNA helicase [Bacillus anthracis CI]
 gi|29895790|gb|AAP09072.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|30256756|gb|AAP25993.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47502550|gb|AAT31226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|47556508|gb|EAL14841.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49178899|gb|AAT54275.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|49333077|gb|AAT63723.1| ATP-dependent RNA helicase (D-E-A-D box family) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118416773|gb|ABK85192.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|164714162|gb|EDR19683.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167513560|gb|EDR88929.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167531598|gb|EDR94263.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170129087|gb|EDS97952.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|170669439|gb|EDT20181.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|172083310|gb|EDT68371.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190560911|gb|EDV14885.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|195990488|gb|EDX54471.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196023170|gb|EDX61849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|206732985|gb|EDZ50159.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206746468|gb|EDZ57861.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217065161|gb|ACJ79411.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|218159819|gb|ACK59811.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|218535161|gb|ACK87559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|221239805|gb|ACM12515.1| ATP-dependent RNA helicase (D-E-A-D box family) [Bacillus cereus
           Q1]
 gi|225790511|gb|ACO30728.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227006946|gb|ACP16689.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228587221|gb|EEK45291.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1293]
 gi|228593222|gb|EEK51039.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
           10876]
 gi|228599147|gb|EEK56760.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus BGSC
           6E1]
 gi|228604928|gb|EEK62384.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 172560W]
 gi|228633070|gb|EEK89682.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1550]
 gi|228638707|gb|EEK95138.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST24]
 gi|228644746|gb|EEL00997.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST26]
 gi|228655893|gb|EEL11740.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-Cer4]
 gi|228661727|gb|EEL17344.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 95/8201]
 gi|228703987|gb|EEL56429.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus Rock4-2]
 gi|228713421|gb|EEL65310.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus F65185]
 gi|228725418|gb|EEL76679.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH676]
 gi|228774525|gb|EEM22926.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228803570|gb|EEM50303.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228813964|gb|EEM60238.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826181|gb|EEM71961.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228832523|gb|EEM78097.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228845044|gb|EEM90086.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229264614|gb|ACQ46251.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|296323776|gb|ADH06704.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|300375822|gb|ADK04726.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
           CI]
 gi|324326167|gb|ADY21427.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 389

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 148/346 (42%), Gaps = 48/346 (13%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           T+ Q+ AI  IL  QD+        I +   G+GKTL  L+ +   +       Q V++A
Sbjct: 22  TEIQKQAIPTILEGQDV--------IAESPTGTGKTLAYLLPLLHKINPEVKQPQVVVLA 73

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L  Q +E ++K+T  T+I    + G    A  ++ +E++      +I+G+     +
Sbjct: 74  PTRELVMQIHEEVQKFTAGTEISGASLIGG---ADIKRQVEKLKK-HPRVIVGSPGRILE 129

Query: 389 SIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            I+  KL +     ++ DE  +   Q+ +   Q        ++ +T   R LV  S    
Sbjct: 130 LIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQD-------VIKSTMRDRQLVFFS---A 179

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWI--CPQIEEKKESN 499
            ++K  E  A    ++  ++ + R +   ++E   ++    +K  ++     + + K   
Sbjct: 180 TMTKAAEDAARDLAVEPQLVRVTRAESKSLVEHTYIICERREKNDYVRRIMHMGDVKAVA 239

Query: 500 FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F +   R + + E         A +H   S  ++E+ M +F+ G  ++L+AT +   GID
Sbjct: 240 FLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGID 299

Query: 557 VVDASIIIIENAEHFGLA----QLHQLRGRVGRGEEISSCILLYHP 598
           + D + +I     H  L     Q     GR GR  +  + + L  P
Sbjct: 300 IDDLTHVI-----HLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTP 340


>gi|325969801|ref|YP_004245993.1| DEAD/DEAH box helicase [Vulcanisaeta moutnovskia 768-28]
 gi|323709004|gb|ADY02491.1| DEAD/DEAH box helicase domain protein [Vulcanisaeta moutnovskia
           768-28]
          Length = 753

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 134/328 (40%), Gaps = 37/328 (11%)

Query: 297 ILQGDVGSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           ++    G GKT   L+ LI+M +  +   + +IM P   LA+     +++Y     I V 
Sbjct: 79  VIMAGTGVGKTEAFLLPLISMMSREDI--KVIIMYPTKALARDQLLRMQRYLSAIDISVM 136

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHR 405
              G+ P      A  RI      I+I    +  +++ +        ++  +V++D+ H 
Sbjct: 137 PYDGDTPS----NARSRIYSSPPSILITNPDMVSEALSHVSKFRELLHEYKVVVLDDFHV 192

Query: 406 FG------VQQRLKLTQKATAPHVLLMTATPIPRTLVLT-SLGDIDISKITEKPAGRKPI 458
           +       V   LK  ++       +++   +   L     L D+  + +   P GR+ +
Sbjct: 193 YNGVFGAHVHYVLKRMRRFMRNWQFVVSTATVGNPLDFARELLDVGNATLIRGPEGRRGL 252

Query: 459 --KTVIIPI--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
               +I PI  +R+ E  E  +  +    K               F  +++RF      F
Sbjct: 253 VRHVLISPITRSRLAEAAELARTCIKRDMKCLVFA------DSHRFVELIKRFVD-KAGF 305

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              + +    ++  ++  V D FK G   +L++T  +E+GIDV DA + ++        +
Sbjct: 306 GDRVRVHRAGLAIEERHEVEDGFKEGRYLVLLSTPTLEMGIDVGDADVAVMATIPP-SYS 364

Query: 575 QLHQLRGRVG-RGEEISSCILLYHPPLS 601
           +  Q  GRVG RG+      +L   P+S
Sbjct: 365 KYLQRSGRVGRRGQRAYVVQVLGDDPMS 392


>gi|302308874|ref|NP_985999.3| AFR452Cp [Ashbya gossypii ATCC 10895]
 gi|299790837|gb|AAS53823.3| AFR452Cp [Ashbya gossypii ATCC 10895]
          Length = 559

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 64/310 (20%), Positives = 124/310 (40%), Gaps = 78/310 (25%)

Query: 302 VGSGKTLVALIAM-----------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            GSGKTL  L+ +           A   + G +A+++AP   LAQQ     +++  + Q 
Sbjct: 203 TGSGKTLAFLLPIFAKLGRLAPLNAVTRQDGPRALVLAPTRELAQQIEAQARQFLSHWQR 262

Query: 351 ---IVEIITGNMPQAHRRKALERIA---HGQAHIIIGTHALFQDSIQYYKLIL-----VI 399
              +  I+ G+        + E IA    G   +++ T     D ++++ L+L     ++
Sbjct: 263 PCPVASIVGGH--------SFEEIALSLQGGCEVLVATPGRLLDCLEHHMLVLRQVATLV 314

Query: 400 VDEQHRF---GVQQRLK--------------LTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           +DE  R    G +++L               L   AT  H +   A    +  V  ++G 
Sbjct: 315 LDEADRMVDMGFEEQLTDVLARIDVLAERQVLMFTATMTHTIEKIANGYLKNAVYATVGG 374

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLK--------VVLSEGKKAYWICPQIEE 494
            D      +P  R+ ++ V     R  ++   +         + ++    A W+  + E 
Sbjct: 375 ADA-----EPQIRQLVEYVPAEEQRFTKLTREVLPNFAPPIIIFINYKATANWLSEKFE- 428

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            +E+ FR+ V                +HG  S   +E  +   ++G   ++IAT V   G
Sbjct: 429 -RETRFRTTV----------------LHGSRSQEQREHSLRQLRSGKVDIMIATNVAGRG 471

Query: 555 IDVVDASIII 564
           ID+ + S+++
Sbjct: 472 IDIPNVSLVV 481


>gi|253575775|ref|ZP_04853110.1| primosomal protein N' [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844818|gb|EES72831.1| primosomal protein N' [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 854

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 7/150 (4%)

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            ++  R+ P   T  QE   + + + +  +   + +L G  GSGKT V L  +   + +G
Sbjct: 286 GRRFQRSEPLPRTPEQELVYRRLAETLDAQRHEVFLLHGVTGSGKTEVYLQTIERCIASG 345

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   L  Q    ++++       V ++   +    R     +I  G+  + IG
Sbjct: 346 RQAIVLVPEISLTPQ---MVERFKGRFGAKVAVLHSRLSTGERYDEWRKIREGRVEVAIG 402

Query: 382 TH-ALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              A+F     + +L L+++DE+H    +Q
Sbjct: 403 ARSAIF---APFSRLGLIVMDEEHETSYKQ 429


>gi|228952820|ref|ZP_04114890.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228806863|gb|EEM53412.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 458

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   +++     QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDSESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKLRVSKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNFDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|205352662|ref|YP_002226463.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272443|emb|CAR37330.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627728|gb|EGE34071.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 144/323 (44%), Gaps = 50/323 (15%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF 406
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGAQRDSLQH----APHIIVATPGRLLDHLQKETVSLDALHILVMDEADRM 158

Query: 407 ---GVQQRL-KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV- 461
              G    + ++ + A A    L+ +   P  +   S       ++ ++P  R  I TV 
Sbjct: 159 LDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAIS------GRVQQQPI-RIEIDTVD 211

Query: 462 -IIPINR------IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            ++ I +        E I  L+ +LS+ + A  +   +    + + ++V +  N++ +  
Sbjct: 212 ALLAIEQQFFETSAHEKISLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALNAVGQ-- 266

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E     
Sbjct: 267 -SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELLVNYELAWDP 322

Query: 575 QLHQLR-GRVGR----GEEISSC 592
           ++H  R GR  R    G  IS C
Sbjct: 323 EVHVHRIGRTARAGSSGLAISFC 345


>gi|189527306|ref|XP_701357.3| PREDICTED: Bloom syndrome protein homolog, partial [Danio rerio]
          Length = 1261

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 10/80 (12%)

Query: 522  HGRMSDIDKESVMDSFKN-GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----L 576
            H  +SD D+E V + + N   C+++ AT    +GID  D   +I     H  L +     
Sbjct: 930  HAGLSDSDREYVQNKWINQDGCQVMCATIAFGMGIDKPDVRYVI-----HASLPKSVEGY 984

Query: 577  HQLRGRVGRGEEISSCILLY 596
            +Q  GR GR  EIS C+L Y
Sbjct: 985  YQESGRAGRDGEISHCVLFY 1004


>gi|71745728|ref|XP_827494.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70831659|gb|EAN77164.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 735

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 128/313 (40%), Gaps = 43/313 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ-----------AVIMAPIGILAQQHYEFIKKYTQNTQI 350
            GSGKT   L+ +   +   G            AVIMAP   LA Q Y+ ++K T  T I
Sbjct: 335 TGSGKTAAFLVPVVHYILKNGVSPAKDRISHPIAVIMAPTRELALQIYDEVRKLTFRTDI 394

Query: 351 IVEIITGNMPQAHRRKALERIA-HGQAHIIIGTHALFQDSIQYY------KLILVIVDEQ 403
             +++ G  P   R +    +A  G+   I   + +    +++       +++ +  +EQ
Sbjct: 395 FYDVVYGGTPYPTRFENDILVACPGRLKDIFDRNIVSFSCVKFLILDEADRMLEMGFEEQ 454

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             + V  R      +     L+ +AT  P+ +       ++++K   +P      K  ++
Sbjct: 455 IEYLVASRYSDMPSSEERQTLMFSAT-FPQRI-------LNLAKRYLRP------KYYLL 500

Query: 464 PINRIDEVIERLKVVLS---EGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTS 516
            + R+    + +   L    E +K   +   I ++K+++    F         LH    S
Sbjct: 501 TVGRVGSTTKNITQKLERVPEAEKKDKLFDIIYKQKQTDLVLIFVETKRSAEQLHSALKS 560

Query: 517 S---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           S      IHG     D+E  +  FK+G   +L+AT V   G+D+ + + +I  +      
Sbjct: 561 SGIPSTTIHGDRRQSDREIALKDFKSGITPILVATDVASRGLDIPNVAHVIQYDLPKEMD 620

Query: 574 AQLHQLRGRVGRG 586
              H++ GR GR 
Sbjct: 621 DYTHRI-GRTGRA 632


>gi|23006182|ref|ZP_00048622.1| COG1197: Transcription-repair coupling factor (superfamily II
           helicase) [Magnetospirillum magnetotacticum MS-1]
          Length = 220

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 59/105 (56%), Gaps = 7/105 (6%)

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
           FGLAQLHQLRGRVGRG+      L  HP  PLS ++  RL  L+  +    GF I+  DL
Sbjct: 2   FGLAQLHQLRGRVGRGQRRGVVYLFGHPQKPLSPSTEKRLRTLEALDRLGAGFAISARDL 61

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
             R  G+++G  Q+G  K  +    L+  LL++A + AK    +D
Sbjct: 62  DLRGAGDLVGDAQAGHVK--LVGLGLYQHLLQLALRAAKGEAAED 104


>gi|323977024|gb|EGB72111.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 127/326 (38%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQKIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q        L ++++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNMLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAITAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                  K  I  + R+        + L +       C       + + ++V +  N + 
Sbjct: 219 QFYETSSKGKIPLLQRL--------LSLHQPSSCVVFC-----NTKKDCQAVCDALNDIG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S    +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 QSALS----LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELVVNFELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|255533359|ref|YP_003093731.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255346343|gb|ACU05669.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 437

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 135/349 (38%), Gaps = 52/349 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM---------AAAVEAGGQ 323
           PT  QE AI  ILQ     NR L +     G+GKT    I M            +    +
Sbjct: 24  PTPIQEQAIPSILQ-----NRDL-LGCAQTGTGKTAAFAIPMLQLLSKPHTNTKIHKVIK 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA Q  E  K Y +N  I   +I G + Q  +  AL    H    I++ T 
Sbjct: 78  ALVLTPTRELAIQIEESFKAYGKNLPIRHLVIFGGVGQKAQTDAL----HRGVDILVATP 133

Query: 384 A-----LFQDSIQYYKLILVIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATPIPRT 434
                 + Q  I    + + ++DE  R      +    K+  K  A    L  +  +P+ 
Sbjct: 134 GRLLDLMNQGFINLRDIEIFVLDEADRMLDMGFIHDVKKVIAKLPAKRQTLFFSATMPKE 193

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    L D  ++          P+K  + P++   E I +    + +G K   +   I +
Sbjct: 194 I--QGLADTILTN---------PVKVEVTPVSSTAEKIRQEIFYVEKGDKKGLLM-HILQ 241

Query: 495 KKESNFRSVVERFNSLHEHFTSSI-------AIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            K      V  R     +     +         IHG  S   ++  + +FK  T ++L+A
Sbjct: 242 DKTIETALVFARTKHGADRIVKDLIKVGVKAEAIHGNKSQNARQRALTNFKAKTTRILVA 301

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           T +   GIDV + S +I     +     +H++ GR GR    G  +S C
Sbjct: 302 TDIAARGIDVDELSHVINYELPNIPETYVHRI-GRTGRAGLSGTALSFC 349


>gi|224285260|gb|ACN40356.1| unknown [Picea sitchensis]
          Length = 411

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 125/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++      Q+ V 
Sbjct: 79  IQQAQSGTGKTATFCSGILQQLDYNVPECQALVLAPTRELAQQIEKVMRALGDYLQVRVH 138

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G       R+ L RI     H+++GT           AL  DSI+ +  +L   DE 
Sbjct: 139 ACVGG---TSIREDL-RILQAGVHVVVGTPGRVYDMLRRRALRPDSIKMF--VLDEADEM 192

Query: 404 HRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++        +   V + +AT  P  L +T        K    P        V
Sbjct: 193 LSRGFKDQIYDIFQLLPSNLQVGVFSATMPPEALEITR-------KFMNNP--------V 237

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      ++  W    + +  E+          N R  V+      
Sbjct: 238 RILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKVDMLTDQM 297

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 298 RARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 357

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 358 PENYLHRI-GRSGR 370


>gi|82544201|ref|YP_408148.1| ATP-dependent RNA helicase DbpA [Shigella boydii Sb227]
 gi|81245612|gb|ABB66320.1| ATP-dependent RNA helicase [Shigella boydii Sb227]
 gi|320174309|gb|EFW49464.1| ATP-dependent RNA helicase DbpA [Shigella dysenteriae CDC 74-1112]
 gi|332094952|gb|EGI99992.1| ATP-independent RNA helicase dbpA [Shigella boydii 3594-74]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 128/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  + + +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|89072916|ref|ZP_01159473.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89051438|gb|EAR56893.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 654

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 142/352 (40%), Gaps = 46/352 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L N+ F +PT  Q ++I  +L           + +   G+GKT    + +   V+     
Sbjct: 47  LDNMGFVAPTPIQAASIPLLLTGTDA------LGKAQTGTGKTAAFSLPVLNKVDLSQHK 100

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++MAP   LA Q    IK   QN + + V  I G      + +AL+      AHI++
Sbjct: 101 PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALK----NGAHIVV 156

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPRTLVLTS 439
           GT    +D I   +L L   DE H F + +  ++ +      V  +M   P     VL S
Sbjct: 157 GTPGRVKDLISRKQLQL---DEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLFS 213

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
                    T  P  ++ +   +    RID   E   V  S+ ++ +W+   +E+ +   
Sbjct: 214 --------ATMPPIVKEIVDRFLRNPARIDVAGENRTV--SKVEQQFWVVKGVEKDEAMS 263

Query: 497 -----ESNFRSVV--------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
                E    S+V        ER            A +HG +    +E  +D  K G   
Sbjct: 264 RLLETEDTDASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVID 323

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +L+AT V+  G+DV   + +   +      + +H++ GR GR       ILL
Sbjct: 324 ILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRAGKAILL 374


>gi|71026577|ref|XP_762954.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68349906|gb|EAN30671.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 707

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S+ +S  ++  S   +     A +HG  +   +E +++ F++G   +L+AT V   G+D+
Sbjct: 571 SDLKSFADQLTSALRYRRFKSASLHGNKTQAQRERILNMFRSGDVNVLVATDVAARGLDI 630

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            D   +I  +     L  +H++ GR GRG       LLY P
Sbjct: 631 KDIDYVINLDVPKSLLDYIHRI-GRTGRGNSKGES-LLYFP 669


>gi|325970751|ref|YP_004246942.1| DEAD/DEAH box helicase [Spirochaeta sp. Buddy]
 gi|324025989|gb|ADY12748.1| DEAD/DEAH box helicase domain protein [Spirochaeta sp. Buddy]
          Length = 622

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 147/359 (40%), Gaps = 43/359 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PTK Q + I  +L+D         I Q   G+GKT    + +   V+      QA+I+AP
Sbjct: 28  PTKIQSACIPLLLKDQVDV-----IGQAQTGTGKTAAFGLPILEIVDPSLYQVQALILAP 82

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q+ E I     + ++ +  + G      + + L R      H+++GT     D 
Sbjct: 83  TRELAVQNAEEINSLKGDRRLEIAAVYGGASMELQLRKLRR----GVHVVVGTPGRILDH 138

Query: 389 ----SIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTAT---PIPRTLV 436
               S+    L  V++DE       G  + ++  L Q      +L  +AT   PI R L 
Sbjct: 139 LRRGSLHLEHLKFVVLDEADEMLDMGFIEDIEEVLKQTPAEKRMLCFSATMPQPIQR-LA 197

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEE 494
              + +  + KI +          + + +   D+ +E L  ++   +  Y I  C + + 
Sbjct: 198 ERFMHNAQVVKIQQDTMTSNLTDQIYVEVKESDK-LEALTRIIDMEENFYGIIFC-RTKV 255

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           + +   R +++R              +HG +S   +E ++   +  +  +++AT V   G
Sbjct: 256 QCDEVGRKLMDRGYDAEP--------LHGDLSQKQRELILHKMRERSISIIVATDVAARG 307

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           ID+ D + +I  +      A +H++ GR GR  +    I    P      + R S +KN
Sbjct: 308 IDISDLTHVINFSLPEDPDAYIHRV-GRTGRAGKTGIAITFVAP----REFKRFSFIKN 361


>gi|227889998|ref|ZP_04007803.1| ATP-dependent helicase [Lactobacillus johnsonii ATCC 33200]
 gi|227849442|gb|EEJ59528.1| ATP-dependent helicase [Lactobacillus johnsonii ATCC 33200]
          Length = 598

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 122/320 (38%), Gaps = 47/320 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK++   I   A V  G   VI   I ++  Q    I    QN  I    +    PQ
Sbjct: 40  TGAGKSMCYQIP--ALVNPGVTLVISPLISLMKDQ----IDSLKQNC-INAAALNSATPQ 92

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQRLK 413
                 L +   G+  ++  T        F+  + +  + LV VDE H   ++G   R  
Sbjct: 93  EEVNPILRQAYEGKIKLLYITPERLAMDYFRYQLNFLDISLVAVDEAHCISQWGHDFRPA 152

Query: 414 LTQK-------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
             Q         + P++L +TAT  P           DI+   + PA    I     P  
Sbjct: 153 YRQIMEGVKSIKSQPNILALTATATPSV-------QKDIADQLKIPAENYVITLFARPN- 204

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-----FRSVVERFNSLHEHFTSS---I 518
                    KVV +      ++   I  KK  N     + S  +    L ++   +    
Sbjct: 205 ------LSFKVVNNPKNTNLYLLDYI--KKHPNQSGIVYASTRKNVEELTDYLAQNGILT 256

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  H  +S+ ++  V D+F+    ++++AT    +GID  +   +I  N+    L   +Q
Sbjct: 257 ASYHAGLSNKERADVQDAFQFDKVQVIVATNAFGMGIDKRNVRFVIHANSTP-NLESYYQ 315

Query: 579 LRGRVGRGEEISSCILLYHP 598
             GR GR  E    IL+YHP
Sbjct: 316 EAGRAGRDGEPCEGILIYHP 335


>gi|145630467|ref|ZP_01786247.1| ATP-dependent DNA helicase [Haemophilus influenzae R3021]
 gi|144983857|gb|EDJ91299.1| ATP-dependent DNA helicase [Haemophilus influenzae R3021]
          Length = 619

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 134/327 (40%), Gaps = 63/327 (19%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK+L   I    A+   G  ++++P+  L +   + +    Q   I  + +  +   
Sbjct: 52  TGNGKSLCYQIP---ALCFDGLTLVISPLISLMKDQVDQL----QANGIEADFLNSSQTL 104

Query: 362 AHRRKALERIAHGQAHII------IGTHALFQDSIQYYKLILVIVDEQH---RFGVQQRL 412
           A +++   ++  GQ  ++      + T++ FQ  I Y K+  + +DE H   ++G   R 
Sbjct: 105 AQQQQVQNKLISGQLKLLYVSPEKVMTNSFFQ-LISYSKVCFIAIDEAHCISQWGHDFRP 163

Query: 413 KLTQ----KATAPH--VLLMTATP-------IPRTLVLTSL----GDIDISKITEKPAGR 455
           + TQ    KA+ P   ++ +TAT        I R L L +L    G  D      +P  R
Sbjct: 164 EYTQLGGLKASFPDAPIMALTATADYATQQDILRHLNLKNLHKYIGSFD------RPNIR 217

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             ++    P+ ++        V+  +GK     C         N R+ VER      +  
Sbjct: 218 YTLEEKYKPMEQLTRF-----VLAQKGKSGIIYC---------NSRNKVERIAESLRNKG 263

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            S A  H  M    +E V   F+    ++++AT    +GI+  +   +      HF L +
Sbjct: 264 VSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFV-----AHFDLPR 318

Query: 576 ----LHQLRGRVGRGEEISSCILLYHP 598
                +Q  GR GR +  +  +L Y P
Sbjct: 319 SIESYYQETGRAGRDDLPAEAVLFYEP 345


>gi|56477019|ref|YP_158608.1| primosomal protein N' (replication factor Y) [Aromatoleum
           aromaticum EbN1]
 gi|56313062|emb|CAI07707.1| primosomal protein N' (Replication factor Y) [Aromatoleum
           aromaticum EbN1]
          Length = 723

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 10/139 (7%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q +AI  +L   +    +  +LQG  GSGKT V L   A  +EAG Q +++ P I +
Sbjct: 192 TAEQGAAIDAVL--AAGPGFVPWLLQGVTGSGKTEVYLRLAARTLEAGRQVLMLVPEIAL 249

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q       ++   T  ++ + +G  P A  R  ++ +  G+A I++GT  A+F     
Sbjct: 250 TPQLEARVAGRFPSAT--VISLHSGLAPGARSRGFVQAL-EGRADIVLGTRLAVFA---A 303

Query: 392 YYKLILVIVDEQHRFGVQQ 410
             +L L++VDE+H    +Q
Sbjct: 304 LPRLGLILVDEEHDASYKQ 322


>gi|332886177|gb|EGK06421.1| UvrABC system protein B [Dysgonomonas mossii DSM 22836]
          Length = 673

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 52/262 (19%), Positives = 115/262 (43%), Gaps = 25/262 (9%)

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           ++  P  + ++ATP    L L S G I + ++        P   V   +N+ID+++E ++
Sbjct: 381 ESLVPQTIYVSATPADYEL-LKSEGVI-VEQLIRPTGLLDPPIDVRPSLNQIDDLMEEIQ 438

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----SIAIIHGRMSDIDKES 532
           +             ++E+ + +   ++ +R      ++ S    S + IH  +  +D+  
Sbjct: 439 M-------------RVEQNERTLVTTLTKRMAEELTNYLSNNGISCSYIHSDVDTLDRIQ 485

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ-LRGRVGR-GEEIS 590
           +MDS + G   +L+   ++  G+D+ + S++ I +A+  G  + H+ L   VGR    ++
Sbjct: 486 IMDSLRTGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAARNVN 545

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED----LKQRKEGEILGIKQSGMPKFLI 646
             ++ Y   ++ +    ++      +  +   E+     KQ ++       Q       I
Sbjct: 546 GKVIFYADKITDSMAKTINETNRRREKQMAYNEEHGIVPKQIQKARTSVFTQRKGEDSAI 605

Query: 647 AQPELHDSLLEIARKDAKHILT 668
            QP   DS+L IA +D    ++
Sbjct: 606 PQPYSQDSILSIASEDQMQYMS 627


>gi|328958182|ref|YP_004375568.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4]
 gi|328674506|gb|AEB30552.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4]
          Length = 488

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 148/354 (41%), Gaps = 47/354 (13%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIM 327
           F PTK QE  I   L+          I++   GSGKT+   + +   V   E   Q +++
Sbjct: 31  FHPTKVQEEVIPLALEGKDV------IVESQTGSGKTVSYGVPLCEKVDWEENKPQVLVL 84

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LA Q  E +    +  ++    + G      ++  L++    ++HI++GT     
Sbjct: 85  VPTRELAIQVKEDLMNVGRLKRVKATAVYGKASFDTQKSELKQ----KSHIVVGTPGRVL 140

Query: 388 DSIQ--YYK------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLT 438
           D +Q   +K      L+L   DE    G   +++           ++   P  R TL+ +
Sbjct: 141 DHLQKGTFKIEKIECLVLDEADEMLNMGFADQVEA----------IINFLPAERQTLLFS 190

Query: 439 SLGDIDISKITE---KPAGRKPIKTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIE- 493
           +    +I +I     KP  +    +++I    + +  I +  V + E KK   +   +  
Sbjct: 191 ATMPKEIERIASFYMKPDKQ----SIVIETTELSKPKIIQSSVKVQEDKKEQQLLDLLTV 246

Query: 494 EKKESN--FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           E  +S   F +  E  N+L+     +   I  IHG M   D+ SVMD F+ G  + L+AT
Sbjct: 247 ENADSCMIFCNTQEAVNNLYTFLNKAGLPIDKIHGGMVQEDRFSVMDDFRQGRFRYLVAT 306

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            V   GID+ + + ++  +      + +H+  GR GR  +    + L  P   K
Sbjct: 307 DVAARGIDIENVTHVVNFDVPVEKESFVHRT-GRTGRAGKTGMALTLVTPKEEK 359


>gi|323493918|ref|ZP_08099035.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546]
 gi|323311859|gb|EGA65006.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546]
          Length = 458

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 129/308 (41%), Gaps = 35/308 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I QG  GSGKT    + + + +       Q +++ P   LA Q  + I+   +    I V
Sbjct: 44  IGQGKTGSGKTATFSLGLLSNLNVKRFRVQTLVLCPTRELADQVAKEIRTLARGIHNIKV 103

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G MP   +  +LE   HG AHI++GT     D +   ++ L     +++DE  R  
Sbjct: 104 LTLCGGMPMGPQIGSLE---HG-AHILVGTPGRILDHMSKGRISLDELNTLVLDEADRML 159

Query: 407 --GVQQRLK-LTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKT 460
             G +  +  + + A A    L+ +   P    +L    + + ++ K+ E    +  I+ 
Sbjct: 160 DMGFEDAIDTIIEAAPAKRQTLLFSATFPNNIESLAAKVMVNPEMVKV-ESTHEKTTIEQ 218

Query: 461 VIIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
               +N  +E  + L+ +L   K   +   C         N +  V+       H   S+
Sbjct: 219 RFYQLNTTEERDDALEALLLTHKPESSVVFC---------NTKKEVQNVADELSHRGFSV 269

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG M   ++E  +  F N +  +L+AT V   G+DV +   +   N E     ++H 
Sbjct: 270 VELHGDMEQREREQALTMFANKSISILVATDVAARGLDVDNLDAVF--NFELSRDPEVHV 327

Query: 579 LR-GRVGR 585
            R GR GR
Sbjct: 328 HRIGRTGR 335


>gi|321459437|gb|EFX70490.1| hypothetical protein DAPPUDRAFT_61214 [Daphnia pulex]
          Length = 509

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 123/319 (38%), Gaps = 59/319 (18%)

Query: 302 VGSGKTLVALIA---------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            G+GKTL  L+          ++ A  +G   +IMAP   LAQQ    + K+       +
Sbjct: 108 TGTGKTLAFLLPAMIHIEGQPISRAERSGPSVLIMAPTRELAQQIEREVAKFPWKGIKCL 167

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHR-- 405
            +  G      RR+ +  +A G   I++ T     D +Q   L       V++DE  R  
Sbjct: 168 CVYGG----GDRRQQIGAVAKG-VEIVVATPGRLYDLMQAGALKTSSVSYVVLDEADRML 222

Query: 406 -FGVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             G + ++K            +   AT P  +   A       +   +G +D++      
Sbjct: 223 DLGFEPQIKKILIDVRPDRQIIMTSATWPEGIRRIANEYMDNPLQVCVGTLDLAAC---- 278

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVV-----LSEGKKAYWICPQIEEKKESNFRSVVERF 507
                  +V   +  +DE  +R +++     L    KA     +         + V ++ 
Sbjct: 279 ------HSVTQHVEILDEEEKRPRLIDFIRALDPNDKAIVFVGR---------KLVADQV 323

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            S       S   IHG    ID+E  +   ++G  KLLIAT V   GID+ D + I+  +
Sbjct: 324 ASELSLIGISCQCIHGDREQIDREQALADLRSGDVKLLIATDVASRGIDIKDITHILNYD 383

Query: 568 AEHFGLAQLHQLRGRVGRG 586
                   +H++ GR GR 
Sbjct: 384 FPRHAEEYVHRI-GRTGRA 401


>gi|300971643|ref|ZP_07171516.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|301046191|ref|ZP_07193365.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|300301848|gb|EFJ58233.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|300411129|gb|EFJ94667.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|315295345|gb|EFU54675.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1]
          Length = 432

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 127/326 (38%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 20  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKIL 79

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 80  T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 133

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 134 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 193

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                  K  I  + R+        + L +       C       + + +SV +  N + 
Sbjct: 194 QFYETSSKGKIPLLQRL--------LSLHQPSSCVVFC-----NTKKDCQSVCDALNEVG 240

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S    +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 241 QSALS----LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELVVNFELA 294

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFC 320


>gi|293376735|ref|ZP_06622957.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909]
 gi|325845681|ref|ZP_08168964.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1]
 gi|292644601|gb|EFF62689.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909]
 gi|325488282|gb|EGC90708.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1]
          Length = 479

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 143/340 (42%), Gaps = 44/340 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPI 330
           T+ Q S I  +L      N+   I+Q   GSGKT    + +  M    E   QA+I+ P 
Sbjct: 26  TEVQASVIPTVL------NKQDLIVQSKTGSGKTAAFGIPICEMLDWDENKPQALILTPT 79

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-- 388
             LA Q  E I    +  +I V  + G  P   + + L++    + HI++GT    QD  
Sbjct: 80  RELALQIKEEISNIGRFKRIKVTAVYGKSPFKEQARELKQ----KTHIVVGTPGRVQDHL 135

Query: 389 ---SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID- 444
              ++   KL L ++DE       + LK+       ++  M   P  R  +L S    D 
Sbjct: 136 ERGTLSLDKLSLFVLDE-----ADEMLKMGFIEVVENI--MNEAPRKRQTMLFSATMPDR 188

Query: 445 ISKITEK----PAGRK---PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           I K+++     P   K   P  T  +  + + EV E+ KV L +          +E  + 
Sbjct: 189 IKKLSQHYLTHPQEIKIESPTLTTDLVEHALYEVREQEKVKLLQD------LLMVENPER 242

Query: 498 SN-FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F S  E  ++L+ + +     I  +HG +   ++   M +FK G    L++T V   
Sbjct: 243 CMIFCSTKEAVDALYRNLSQKGYPIERLHGGLDQKERFETMKNFKIGRFAYLVSTDVAAR 302

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           GIDV   S +I  +      + +H++ GR GR  +    I
Sbjct: 303 GIDVSGVSHVINYDLPPEKDSFVHRI-GRAGRAGQKGKAI 341


>gi|258452958|ref|ZP_05700952.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257859469|gb|EEV82323.1| conserved hypothetical protein [Staphylococcus aureus A5948]
          Length = 360

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 156/359 (43%), Gaps = 66/359 (18%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++ F  ++ Q  A + I++ + ++  +L  L    G+GKT +    +  A   G    I+
Sbjct: 22  HLSFELSEQQSYASEHIVRAIRKRQTIL--LYAVTGAGKTEMMFQGIQYARIQGDNIAIV 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA------HIIIG 381
           +P                    ++VEI +  +  A   + ++ I H Q+      H ++ 
Sbjct: 80  SP-----------------RVDVVVEI-SKRIKDAFLNEDID-ILHQQSRQQFEGHFVVC 120

Query: 382 T-HALFQDSIQYYKLILVIVDEQHRF------GVQQRLKLTQKATAPHVLLMTATPIPRT 434
           T H L++   Q++  I +  DE   F       +QQ LK + K      + MTATP P+ 
Sbjct: 121 TVHQLYRFK-QHFDTIFI--DEVDAFPLSMDKNLQQALKSSSKVEHA-TIYMTATP-PKQ 175

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L    L +I    I + PA R   K++ +P  R  ++           KK   +  +I +
Sbjct: 176 L----LSEIPHENIIKLPA-RFHKKSLPVPKYRYFKL---------NNKKIQKMLYRILQ 221

Query: 495 KKESNFRSVVERFN---------SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            + +N R  +  FN         S+++   + +  +H    D+ +   ++  +NG   ++
Sbjct: 222 DQINNQRYTLVFFNNIETMIKTFSVYKQKITKLTYVHS--EDVFRFEKVEQLRNGHFDVI 279

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI-SSCILLYHPPLSKN 603
             TT++E G  + +  +++I+ A  +    L Q+ GRVGR  E  +  +L +H  +S N
Sbjct: 280 FTTTILERGFTMANLDVVVID-AHQYTQESLIQIAGRVGRKLECPTGKVLFFHEGVSMN 337


>gi|254778953|ref|YP_003057058.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           pylori B38]
 gi|254000864|emb|CAX28796.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           pylori B38]
          Length = 492

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 142/348 (40%), Gaps = 47/348 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++     +A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G       +K  E I      ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQ---SVKKQCEFIKKN-PQVMIATPGRLLDH 151

Query: 390 IQY---YKLI--LVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT---PIPRTLV 436
           ++    +K +  +V++DE         L   ++      +   +LL +AT   PI R   
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKR--- 208

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE-- 494
              L D    KI E P     IK  I P N  +  I +   V++E ++A  I   ++   
Sbjct: 209 ---LAD----KILENP-----IKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256

Query: 495 -KKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            KK   F    +  + LH+   S       +HG M   D+ S + +FK     +L+AT V
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|242081837|ref|XP_002445687.1| hypothetical protein SORBIDRAFT_07g024245 [Sorghum bicolor]
 gi|241942037|gb|EES15182.1| hypothetical protein SORBIDRAFT_07g024245 [Sorghum bicolor]
          Length = 410

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 19/107 (17%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHGR S   +E  +D F+NG C +L+A+ ++  GIDV D   +I     +   A  H++ 
Sbjct: 272 IHGRKSQDQREISLDGFRNGRCNVLVASDILARGIDVPDVGHVIDYEMPNSIEACTHRI- 330

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           GR GR  +             K   T    L+NTE  F     DLKQ
Sbjct: 331 GRKGRAGK-------------KGVATSFLTLENTEIFF-----DLKQ 359


>gi|303321131|ref|XP_003070560.1| DEAD box ATP-dependent RNA helicase, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240110256|gb|EER28415.1| DEAD box ATP-dependent RNA helicase, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320035982|gb|EFW17922.1| ATP-dependent RNA helicase [Coccidioides posadasii str. Silveira]
          Length = 1150

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 144/355 (40%), Gaps = 53/355 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA--PIGILAQ---QHYEFIKKYTQNTQ-I 350
           I+     SGK+L+  + M   +E   Q+  M   P   LAQ   ++ E + +Y +  +  
Sbjct: 375 IVSTSTSSGKSLIYQVPMLCELEKDSQSRGMYIFPTKALAQDQRRNMEELMQYMEGLEYT 434

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYK-LILVIVD 401
           +VE   G+ P   RR A+      +A II     +   +I         + K L LV+VD
Sbjct: 435 MVETFDGDTPM-ERRNAI----RDEARIIFTNPDMLHITILPQESSWRTFLKNLKLVVVD 489

Query: 402 EQHRFG---------VQQRLKLTQKATAPHVL------LMTATPIPRTLVLTSLGDIDIS 446
           E H +          + +RL+    +   H +         A P      +  +  + ++
Sbjct: 490 ELHVYNGLFGSHVAYIMRRLRRICASLGNHSVRFVSCSATVANPEQHMKTIFGVNKVKLT 549

Query: 447 KITEKPAGRK-------PIKTVIIPIN-RIDEVIERLKVVLS---EGKKAYWICPQIEEK 495
                PAGRK       P K    P + R + ++E  ++       G +    C +I ++
Sbjct: 550 DFDGSPAGRKEFICWNTPFKDPGDPSSGRGNCLLESARLFCQLILRGVRVIAFC-RIRKQ 608

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIH-GRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            E    +V + F +L     +   + + G  S  D+  +      G    ++AT+ +E+G
Sbjct: 609 CEFLLSAVRDEFRALDRSSVAKFVMGYRGGYSPQDRRQIEREMFEGKLLGIVATSALELG 668

Query: 555 IDV--VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           +D+  +DA   +I +   F ++ L Q  GR GR  + S  IL+     +   Y R
Sbjct: 669 VDIGSLDA---VISHGFPFSISNLRQQSGRAGRRNKDSLSILVGDSYATDQHYMR 720


>gi|226501258|ref|NP_001151064.1| LOC100284697 [Zea mays]
 gi|194690824|gb|ACF79496.1| unknown [Zea mays]
 gi|195644024|gb|ACG41480.1| eukaryotic initiation factor 4A [Zea mays]
          Length = 410

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 124/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 78  IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 137

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 138 ACVGGTSV----REDQRILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMF--VLDEADEM 191

Query: 404 HRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++        +   V + +AT  P  L +T        K   KP        V
Sbjct: 192 LSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR-------KFMNKP--------V 236

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K       K  W    + +  E+          N R  V+      
Sbjct: 237 RILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKM 296

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 297 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 356

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 357 PENYLHRI-GRSGR 369


>gi|311746403|ref|ZP_07720188.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
 gi|126575289|gb|EAZ79621.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
          Length = 399

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 128/322 (39%), Gaps = 47/322 (14%)

Query: 301 DVGSGKTLVALIAMAA-AVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GSGKT   LI +   A++  GQ  A+I+ P   LA Q  +  K  ++  ++      G
Sbjct: 100 NTGSGKTGAFLIPIIEHALKNPGQFTALIVTPTRELALQIDQEFKSLSKGMRLHSATFIG 159

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQ 409
                   K L R    + H+I+GT     D          Q   L+L   D     G  
Sbjct: 160 GTNINTDMKVLSR----KLHVIVGTPGRLLDLTNRKLLKLNQVKTLVLDEFDRMLDMGFV 215

Query: 410 QRLK-----LTQKATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
             +K     +TQ+      +L +AT  P  + L+ + L              + P++  I
Sbjct: 216 NDVKKLVGGMTQRE---QTMLFSATLEPNQKNLIQSLL--------------KNPVEVKI 258

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFT 515
                 +E IE+  + + EGK  + +   + + +        +  + + +R +       
Sbjct: 259 NTGVSTNENIEQGIIRVPEGKDKFGMLADLFQNRAMDKVIVFTETKRLADRLSKKLNQAG 318

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
               +IHG  S   +   ++ FK+G  ++L+AT V   GIDV D S +I         + 
Sbjct: 319 VKSGLIHGNKSQNFRNKTIEQFKSGETRVLVATDVAARGIDVADVSHVINYQLPMTMDSY 378

Query: 576 LHQLRGRVGRGEEISSCILLYH 597
           +H++ GR GR  +    I   +
Sbjct: 379 IHRI-GRTGRAGKTGHAITFVN 399


>gi|2500518|sp|Q40465|IF411_TOBAC RecName: Full=Eukaryotic initiation factor 4A-11; Short=eIF-4A-11;
           AltName: Full=ATP-dependent RNA helicase eIF4A-11
 gi|485987|emb|CAA55737.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 124/316 (39%), Gaps = 48/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 141 ACVGGTSV----REDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDNIKMF--VLDEADEM 194

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++    +   P   V + +AT  P  L +T        K   KP        V
Sbjct: 195 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMNKP--------V 239

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K       K  W    + +  E+          N R  V+      
Sbjct: 240 RILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 299

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 300 RGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 359

Query: 572 GLAQLHQL--RGRVGR 585
               LH++   GR GR
Sbjct: 360 PENYLHRIGHSGRFGR 375


>gi|328767309|gb|EGF77359.1| hypothetical protein BATDEDRAFT_91848 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 630

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 118/291 (40%), Gaps = 56/291 (19%)

Query: 302 VGSGKTLVALIAMAA-AVEA----------GGQAVIMAPIGILAQQHYEFIKKYTQNTQ- 349
            GSGKTLV ++ +   A+EA          G   +I+ P   LA+Q Y+F K+  +  + 
Sbjct: 229 TGSGKTLVFILPLVMLALEAETRLPWIQGEGPVGLILCPSRELARQTYDFTKELCEALEQ 288

Query: 350 -----IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VI 399
                I V +  G +  A +   L       AHI++ T    QD ++  K  L     + 
Sbjct: 289 SGYPSIRVLLCMGGISMAEQGSVL----RAGAHIVVATPGRLQDMLEKNKFNLNNCKYLC 344

Query: 400 VDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           +DE  R    G +  ++  ++   +    LL +AT               + K  +  A 
Sbjct: 345 MDEADRMIDMGFEDDVRNIMSFFKSQRQTLLFSAT---------------MPKKIQNFAK 389

Query: 455 RKPIKTVIIPINRID----EVIERLKVVLSEGKKAYWI-CPQIEEKKESNFRSVVERFNS 509
              I  V++ + R      +VI+ ++ V  E K  Y + C Q        F       + 
Sbjct: 390 SALISPVVVNVGRAGAANLDVIQEVEYVKQEAKMVYLLECLQKTPPPVVVFAENKNDVDD 449

Query: 510 LHEHF----TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           +HE+       ++AI HG     ++E  + SFK     +L+AT V   G+D
Sbjct: 450 IHEYLLLKGIEAVAI-HGSKDQEEREFAIKSFKACKADVLVATDVASKGLD 499


>gi|293375719|ref|ZP_06621991.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
           PC909]
 gi|325838961|ref|ZP_08166744.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
 gi|292645662|gb|EFF63700.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
           PC909]
 gi|325490616|gb|EGC92928.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
          Length = 538

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 131/310 (42%), Gaps = 37/310 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQII-V 352
           I Q   G+GKT   ++ +   ++      QA+++ P   LA Q +E  KK+++N + + +
Sbjct: 45  IGQAQTGTGKTAAFMLPILEKIDPKNKNVQALVLCPTRELAVQVHEESKKFSRNNRDVHI 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQH 404
             I G      + +AL++       I++GT     D ++           L+L   DE  
Sbjct: 105 LSIYGGQSYDPQIRALKK----GVQIVVGTPGRVMDHMRRGTLKLENLKMLVLDEADEML 160

Query: 405 RFGVQQRLK-LTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKT 460
             G +  ++ + +K       +M +  + R    +  T   + ++ K+  +    K I  
Sbjct: 161 NMGFKDDIEEILEKTPESRQTVMFSATMAREIMNIAKTYQKNPEVVKVVSEELSNKKIDQ 220

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             + + R D V   ++ +   G  +  +    +       R V E  + L E    +  +
Sbjct: 221 YYVEVKRQDRVQAMIRCIDMMGLTSSIVFTNTK-------REVDELVSKLQEEGYVTEGL 273

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQL 576
            HG +    ++ VM+SF+     +L+AT +   GIDV +   +    I  N E++    +
Sbjct: 274 -HGDLKQAQRDRVMNSFRRKNVNILVATDIAARGIDVSNVEAVFNYDIPLNEENY----V 328

Query: 577 HQLRGRVGRG 586
           H++ GR GR 
Sbjct: 329 HRI-GRTGRA 337


>gi|302507130|ref|XP_003015526.1| hypothetical protein ARB_05837 [Arthroderma benhamiae CBS 112371]
 gi|291179094|gb|EFE34881.1| hypothetical protein ARB_05837 [Arthroderma benhamiae CBS 112371]
          Length = 1129

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 75/361 (20%), Positives = 137/361 (37%), Gaps = 48/361 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQH----YEFIKKYTQNTQI 350
           I+     SGK+L+  + M   +E     + + + P   LAQ       + +K       I
Sbjct: 343 IVSTSTSSGKSLIYQVPMLHELEKNPHSRGMYIFPTKALAQDQRRSMLDMLKYMEGLEHI 402

Query: 351 IVEIITGNMPQAHRRKALE--RIAHGQAHI----IIGTHALFQDSIQYYKLILVIVDEQH 404
           +VE   G+ P A R    E  RI      I    I+   +L++  +++ K   V+VDE H
Sbjct: 403 MVETFDGDTPMASRNAIREEARIIFTNPDILHVTILPNESLWRKFLKHLKY--VVVDELH 460

Query: 405 RFG---------VQQRLKLTQKATAPH------VLLMTATPIPRTLVLTSLGDIDISKIT 449
            +          + +RL+    +               A P      +  + ++ ++ I 
Sbjct: 461 VYNGLFGTHVALIMRRLRRICASIGNSDVKFISCSATVANPEEHMKAIFGIDEVKLTDID 520

Query: 450 EKPAGRKPIKTVIIPI-----------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
             P+GRK       P            + IDE  +    ++  G +    C +I ++ E 
Sbjct: 521 GSPSGRKEFLCWQTPYKDPNDASSGRGSGIDESAKLFCQLILRGVRVIAFC-RIRKQCEY 579

Query: 499 NFRSVVERFNSLHEHFTSSIAIIH-GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +V + F +L+    S   + + G  S  D+  +      G    ++AT  +E+G+D+
Sbjct: 580 LLNAVKDEFRTLNRSDVSRFVMGYRGGYSPQDRRKIEREMFEGKLLGIVATNALELGVDI 639

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
                +I     H  ++   Q  GR GR  + S  IL+     +   Y     + N +D 
Sbjct: 640 GTLDAVITHEFPH-SISNFRQQSGRAGRRNKDSLSILVASQSAADQHY-----INNPDDL 693

Query: 618 F 618
           F
Sbjct: 694 F 694


>gi|291166137|gb|EFE28183.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
          Length = 539

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 133/313 (42%), Gaps = 43/313 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           I Q   G+GKT    I +   +        QA+++ P   LA Q      K T  T+I  
Sbjct: 43  IGQSQTGTGKTFAFGIPILDNILQNNNHQIQALVICPTRELAVQVSNEFDKLTAFTKIRN 102

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G      + K L++    +  I+IGT     D I+   + L     V++DE     
Sbjct: 103 IAVYGGEYIDKQIKGLKK----KVQIVIGTPGRILDHIERKTIKLDHVRFVVLDEADEML 158

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKT 460
             G  + ++  L + +     +L +AT     L L+   L + ++ ++  K      I+ 
Sbjct: 159 DMGFIEDIENILRETSEERQTMLFSATMPAEILSLSKKYLKNPEMIRVKNKTMTVDQIEQ 218

Query: 461 VIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           + + +   D  EV+ R+ + L   KKA   C         N + +V+      ++   ++
Sbjct: 219 IYMKVKNADKSEVLSRI-LQLESSKKAIIFC---------NTKKMVDELVVDMQNRGYAV 268

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII-----IENAEHFGL 573
             +HG +    ++ V++ F+ G   +LIAT V   G+D+ D  ++I     IE  ++   
Sbjct: 269 EALHGDLKQQKRDMVLNRFREGQISMLIATDVAARGLDIRDVDLVINYDLPIEEEQY--- 325

Query: 574 AQLHQLRGRVGRG 586
             +H++ GR GR 
Sbjct: 326 --VHRI-GRTGRA 335


>gi|57234913|ref|YP_181084.1| primosomal protein N' [Dehalococcoides ethenogenes 195]
 gi|57225361|gb|AAW40418.1| primosomal protein N' [Dehalococcoides ethenogenes 195]
          Length = 815

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L A+A ++  G +A+++ P I +  Q    F  ++       + ++
Sbjct: 306 LLHGITGSGKTEIYLQALAESLRLGKKAIVLVPEISLTPQTIARFAGRFPGQ----IAVL 361

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +    +    +RI +GQA I+IG   ALF       K  ++I+DE+H +  +Q+
Sbjct: 362 HSRLSPGEQFDEWQRIKNGQADIVIGPRSALFAP---LDKPGIIIIDEEHEWTYKQQ 415


>gi|1170506|sp|P41379|IF4A2_NICPL RecName: Full=Eukaryotic initiation factor 4A-2; Short=eIF-4A-2;
           AltName: Full=ATP-dependent RNA helicase eIF4A-2
 gi|19697|emb|CAA43513.1| nicotiana eukaryotic translation initiation factor 4A [Nicotiana
           plumbaginifolia]
          Length = 413

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 121/312 (38%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++   L        +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLS 196

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V + +AT  P  L +T        K   KP        V I
Sbjct: 197 RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMNKP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 361

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 362 NYLHRI-GRSGR 372


>gi|145628391|ref|ZP_01784192.1| organic solvent tolerance protein [Haemophilus influenzae 22.1-21]
 gi|145638475|ref|ZP_01794085.1| organic solvent tolerance protein [Haemophilus influenzae PittII]
 gi|260583174|ref|ZP_05850954.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae NT127]
 gi|144980166|gb|EDJ89825.1| organic solvent tolerance protein [Haemophilus influenzae 22.1-21]
 gi|145272804|gb|EDK12711.1| organic solvent tolerance protein [Haemophilus influenzae PittII]
 gi|260093792|gb|EEW77700.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae NT127]
 gi|309751607|gb|ADO81591.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae R2866]
 gi|309973774|gb|ADO96975.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae R2846]
          Length = 619

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 134/327 (40%), Gaps = 63/327 (19%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK+L   I    A+   G  ++++P+  L +   + +    Q   I  + +  +   
Sbjct: 52  TGNGKSLCYQIP---ALCFDGLTLVISPLISLMKDQVDQL----QANGIEADFLNSSQTL 104

Query: 362 AHRRKALERIAHGQAHII------IGTHALFQDSIQYYKLILVIVDEQH---RFGVQQRL 412
           A +++   ++  GQ  ++      + T++ FQ  I Y K+  + +DE H   ++G   R 
Sbjct: 105 AQQQQVQNKLISGQLKLLYVSPEKVMTNSFFQ-LISYSKVCFIAIDEAHCISQWGHDFRP 163

Query: 413 KLTQ----KATAPH--VLLMTATP-------IPRTLVLTSL----GDIDISKITEKPAGR 455
           + TQ    KA+ P   ++ +TAT        I R L L +L    G  D      +P  R
Sbjct: 164 EYTQLGGLKASFPDAPIMALTATADYATQQDILRHLNLKNLHKYIGSFD------RPNIR 217

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             ++    P+ ++        V+  +GK     C         N R+ VER      +  
Sbjct: 218 YTLEEKYKPMEQLTRF-----VLAQKGKSGIIYC---------NSRNKVERIAESLRNKG 263

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            S A  H  M    +E V   F+    ++++AT    +GI+  +   +      HF L +
Sbjct: 264 VSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFV-----AHFDLPR 318

Query: 576 ----LHQLRGRVGRGEEISSCILLYHP 598
                +Q  GR GR +  +  +L Y P
Sbjct: 319 SIESYYQETGRAGRDDLPAEAVLFYEP 345


>gi|315127597|ref|YP_004069600.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913]
 gi|315016111|gb|ADT69449.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913]
          Length = 408

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 141/335 (42%), Gaps = 38/335 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------EAG-GQA 324
           +PT  Q+ AI + LQ          +     G+GKT   LI     +      + G  + 
Sbjct: 23  TPTSIQQQAIPEALQGRDI------LASAPTGTGKTAAFLIPAIQYLMDFPRRDPGFARV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +IM P   LA Q +E  +   + TQ+ + ++TG +     ++  E        I+I T  
Sbjct: 77  LIMTPTRELAYQIHEQCELLAKQTQLKIGVVTGGINYGTHKEIFE----NNNDILIATPG 132

Query: 385 -----LFQDSIQYYKLILVIVDEQHRF---GVQQR-LKLTQKA-TAPHVLLMTATPIPRT 434
                L  ++     + ++I+DE  R    G ++  L++  +A       L +AT    +
Sbjct: 133 RLMEYLETENFHAENVEMLILDEADRMLDMGFRKEMLRICDEAKNRRQCFLFSATLEGDS 192

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + L +   ++   + E  + RK    +   ++  D+   +L+++++         P +  
Sbjct: 193 VELFAERILNDPALLEAESSRKEKAKIHQWVHLADDYRHKLELLVN-----TLNGPDV-- 245

Query: 495 KKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            K   F    ER  +L    T++    A + G M    +   M++F +G  ++L+AT V 
Sbjct: 246 SKAIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSGKTRILVATDVA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             GIDV D S +I  +        +H++ GR GR 
Sbjct: 306 ARGIDVADISHVINFDMPRTADVYVHRI-GRTGRA 339


>gi|331662753|ref|ZP_08363676.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143]
 gi|331061175|gb|EGI33139.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGNLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|307128952|ref|YP_003880968.1| Primosome factor n' (replication factor Y) [Dickeya dadantii 3937]
 gi|306526481|gb|ADM96411.1| Primosome factor n' (replication factor Y) [Dickeya dadantii 3937]
          Length = 732

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++       VE +
Sbjct: 221 LLAGITGSGKTEVYLSVLENILAQGKQALVLVPEIGLTPQT----IARFRDRFNAPVEAL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +    R     R   G+A I+IGT  ALF     + +L L+++DE+H    +Q+
Sbjct: 277 HSGLNDGERLSVWLRARQGEAAIVIGTRSALF---TPFARLGLIVIDEEHDGSYKQQ 330


>gi|296284893|ref|ZP_06862891.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Citromicrobium bathyomarinum JL354]
          Length = 812

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 128/333 (38%), Gaps = 64/333 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV----------EAGGQAVIMAPIGILAQQ-HYEFIKKYT 345
           +L  D G+GKTL   +   AA             G   + ++P+  LAQ      I    
Sbjct: 39  LLVADTGAGKTLAGFLPTLAAFIPSRLGDAKPPEGLHTIYVSPLKALAQDVQRNLIAPVE 98

Query: 346 Q-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-------L 397
           Q    I VE  +G+     +R+  ++      ++++ T       + Y +          
Sbjct: 99  QMGLPISVETRSGDTSSDRKRRQRDK----PPNVLLTTPESLSLLLSYPESFDIFAGCQR 154

Query: 398 VIVDEQHRFGVQQRLKLTQ------KATAPHVLLMTATPIPRTLV--------LTSLGDI 443
           +++DE H F   +R  L        +A AP    M    +  T+         L   G+I
Sbjct: 155 IVIDEIHAFATGKRGDLLALCLERLQAIAPQ---MQRAALSATVANEEGFRAWLAPHGEI 211

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           D   + +  AG  P   +++P    DE       V   G  A W  PQ+ E    N  ++
Sbjct: 212 DRVAVVQGEAGVPPEVEILLP----DE-----NRVPWGGHAATWAIPQLYEVLRQNRTTL 262

Query: 504 V---ERF--NSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           V    RF    + +H          I I HG +S   +E V  +   G  + L+AT  ++
Sbjct: 263 VFTNTRFLAEYIFQHLWDVNEDKLPIGIHHGSLSREAREKVEGAMAAGELRALVATASLD 322

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +G+D  D   ++   A   G ++L Q   RVGR
Sbjct: 323 LGVDWGDIDCVVQMGAPK-GSSRLLQ---RVGR 351


>gi|268319487|ref|YP_003293143.1| ATP-dependent DNA helicase RecQ [Lactobacillus johnsonii FI9785]
 gi|262397862|emb|CAX66876.1| ATP-dependent DNA helicase RecQ [Lactobacillus johnsonii FI9785]
          Length = 598

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 123/320 (38%), Gaps = 47/320 (14%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK++   +   A V  G   VI   I ++  Q    I    QN  I    +    PQ
Sbjct: 40  TGAGKSMCYQVP--ALVNPGVTLVISPLISLMKDQ----IDSLKQNG-INAAALNSATPQ 92

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQRLK 413
                 L +   G+  ++  T        F+  + +  + LV VDE H   ++G   R  
Sbjct: 93  EEVNPILRQAYEGKIKLLYITPERLAMDYFRYQLNFLNISLVAVDEAHCISQWGHDFRPA 152

Query: 414 LTQK-------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
             Q         + P++L +TAT  P           DI+   + PA    I +   P  
Sbjct: 153 YRQIMEGVKSIKSQPNILALTATATPSV-------QKDIADQLKIPAENYVITSFARPN- 204

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-----FRSVVERFNSLHEHFTSS---I 518
                    KVV +      ++   I  KK  N     + S  +    L ++   +    
Sbjct: 205 ------LSFKVVDNPKNTNLYLLDYI--KKHPNQSGIVYASTRKNVEELTDYLAQNGILT 256

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  H  +S+ ++  V D+F+    ++++AT    +GID  +   +I  N+    L   +Q
Sbjct: 257 ASYHAGLSNKERADVQDAFQFDKVQVIVATNAFGMGIDKRNVRFVIHANSTP-NLESYYQ 315

Query: 579 LRGRVGRGEEISSCILLYHP 598
             GR GR  E    IL+YHP
Sbjct: 316 EAGRAGRDGEPCEGILIYHP 335


>gi|260777273|ref|ZP_05886167.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606939|gb|EEX33213.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 641

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 136/335 (40%), Gaps = 25/335 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           SPT  Q +AI  +++          + +   G+GKT    + +   +E      QA+++A
Sbjct: 28  SPTPIQAAAIPHLMEGTDA------LGKAQTGTGKTAAFSLPLLNKLELSQRKPQAIVLA 81

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN + + V  I G      + +AL+      AHI++GT    Q
Sbjct: 82  PTRELAIQVAAEIKNLGQNISGLKVLEIYGGASIVDQMRALK----NGAHIVVGTPGRVQ 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL-LMTATPIPRTLVLTSLGDIDIS 446
           D I   +L L   DE H F + +  ++        V  +M   P     VL S     + 
Sbjct: 138 DLINRERLHL---DEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQRVLFSATMPPML 194

Query: 447 KITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLS-EGKKAYWICPQIEEKKES----NF 500
           K   +   R PI   +   N  +D+V ++  VV   E  +A     + EE   S      
Sbjct: 195 KNIVERFLRDPITIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVFVRT 254

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           R   ER            + +HG +    +E  +D  K G   +L+AT V+  G+DV   
Sbjct: 255 RQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRI 314

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           + +   +      + +H++ GR GR       ILL
Sbjct: 315 THVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILL 348


>gi|251795451|ref|YP_003010182.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247543077|gb|ACT00096.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 472

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 144/346 (41%), Gaps = 44/346 (12%)

Query: 273 PTKSQESAIKDILQ--DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIM 327
           P+  Q  AI  +L+  D+S +++         GSGKTL  L+ M   ++      QA+I+
Sbjct: 27  PSAIQAEAIPTLLEGRDVSARSQ--------TGSGKTLAYLLPMLQQLKPSSGAIQAIIL 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA Q     + Y +   + V+ + G    A  ++ +E++   +  I+IGT     
Sbjct: 79  APTQELAMQIVRVAEGYAEPLGLRVQQLIGG---AAMKRQIEKLKL-RPQIVIGTPGRIH 134

Query: 388 DSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           + ++  KL L     +++DE       Q  +L        +L   A    R L   S   
Sbjct: 135 ELLKLRKLKLSDVRHIVIDE-----ADQVFELGSTREVETILF--AMSQERQLAFFSATY 187

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESN 499
            D+    E    +  ++  I P  R+ E I    VV  +  K   A  I   ++ +    
Sbjct: 188 PDVMARFEGRWMKDTVRIQIAPEQRVSETINNFYVVCDKRDKPDAARRIVRMLKPESALL 247

Query: 500 FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F +V E   +     +    S+  ++G      + + +  F+ G  +LL+AT V   G+D
Sbjct: 248 FLNVTENIANWEAKLSYEGFSVETLYGDSDKQRRAATLARFREGKTQLLLATDVAARGLD 307

Query: 557 VVDASIIIIE----NAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +    ++I      +A+H+    +H+  GR GR     + I L  P
Sbjct: 308 IEGLQLVINLDPPIDADHY----VHRA-GRTGRMGRKGTVISLITP 348


>gi|119494753|ref|XP_001264188.1| DEAD box RNA helicase HelA, putative [Neosartorya fischeri NRRL
           181]
 gi|119412350|gb|EAW22291.1| DEAD box RNA helicase HelA, putative [Neosartorya fischeri NRRL
           181]
          Length = 662

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 97/427 (22%), Positives = 166/427 (38%), Gaps = 104/427 (24%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQE----SAIKDILQDMS-------QKNRMLRILQGD- 301
           P + +    Q+ LR+  F+    QE      I+ I++DM+       Q   +  ILQGD 
Sbjct: 67  PDDFQSAAPQEPLRD--FTDLAEQELVDPKIIRAIVKDMNIKTMTDVQSQTLREILQGDD 124

Query: 302 ------VGSGKTLVALIAM-----------------AAAVEAGGQAVIMAPIGILAQQHY 338
                  G+GKTL  L  +                 + A  +  +A+I++P   LA+Q  
Sbjct: 125 VLAQAKTGTGKTLAFLTPVFQNIMKDPSLKGLNRRRSQASSSDIRAIIISPTRELAEQIA 184

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQ 391
              ++   ++ +IV+   G      +R+ L RI     H++IGT    +D        I 
Sbjct: 185 VEARRLAAHSGVIVQTAVGG---TQKREGLRRIQREGCHVLIGTPGRLKDILSDSYNGIT 241

Query: 392 YYKLILVIVDEQHRF---GVQ------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
              L  +++DE  R    G        QRL           L+ +AT +PR +       
Sbjct: 242 APNLSTLVLDEADRLLDDGFSEDIINIQRLLPDPMKVDRQTLMFSAT-VPREV------- 293

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-----VVLSEGKKAY---------WI 488
           + + + T KP   K +KTV     R DEV   L      VVL   + A          ++
Sbjct: 294 MRMVRKTMKP-NFKFVKTV-----RDDEVPTHLTVPQKYVVLRGYENAMPALLEFVTKYV 347

Query: 489 CPQIEEKKESNFRSVVERFNS------LHEHFTS------------SIAIIHGRMSDIDK 530
             + E   +  F+++V  FNS      ++E F +             +  IH +++   +
Sbjct: 348 EGENENPNQRPFKAIVY-FNSTVQTNLVYETFRNIVEQRHHPLRRVRVYEIHSQLTQARR 406

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
               D F+     +L ++ V   G+D  D + +I  +        +H+L GR  R  +  
Sbjct: 407 TRSSDFFRAAKSAILFSSDVTARGMDFPDVTHVIQVSIPRDRATYIHRL-GRTARANKTG 465

Query: 591 SCILLYH 597
              +L H
Sbjct: 466 EGWVLTH 472


>gi|300937578|ref|ZP_07152392.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|300457386|gb|EFK20879.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q        L ++++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNMLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAITAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|261331698|emb|CBH14692.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 738

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 128/313 (40%), Gaps = 43/313 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ-----------AVIMAPIGILAQQHYEFIKKYTQNTQI 350
            GSGKT   L+ +   +   G            AVIMAP   LA Q Y+ ++K T  T I
Sbjct: 338 TGSGKTAAFLVPVVHYILKNGVSPAKDRISHPIAVIMAPTRELALQIYDEVRKLTFRTDI 397

Query: 351 IVEIITGNMPQAHRRKALERIA-HGQAHIIIGTHALFQDSIQYY------KLILVIVDEQ 403
             +++ G  P   R +    +A  G+   I   + +    +++       +++ +  +EQ
Sbjct: 398 FYDVVYGGTPYPTRFENDILVACPGRLKDIFDRNIVSFSCVKFLILDEADRMLEMGFEEQ 457

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             + V  R      +     L+ +AT  P+ +       ++++K   +P      K  ++
Sbjct: 458 IEYLVASRYSDMPSSEERQTLMFSAT-FPQRI-------LNLAKRYLRP------KYYLL 503

Query: 464 PINRIDEVIERLKVVLS---EGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTS 516
            + R+    + +   L    E +K   +   I ++K+++    F         LH    S
Sbjct: 504 TVGRVGSTTKNITQKLERVPEAEKKDKLFDIIYKQKQTDLVLIFVETKRSAEQLHSALKS 563

Query: 517 S---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           S      IHG     D+E  +  FK+G   +L+AT V   G+D+ + + +I  +      
Sbjct: 564 SGIPSTTIHGDRRQSDREIALKDFKSGITPILVATDVASRGLDIPNVAHVIQYDLPKEMD 623

Query: 574 AQLHQLRGRVGRG 586
              H++ GR GR 
Sbjct: 624 DYTHRI-GRTGRA 635


>gi|256018403|ref|ZP_05432268.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
 gi|332279457|ref|ZP_08391870.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
 gi|332101809|gb|EGJ05155.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 128/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  + + +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|229164405|ref|ZP_04292334.1| ATP-dependent RNA helicase dbpA [Bacillus cereus R309803]
 gi|228619055|gb|EEK75952.1| ATP-dependent RNA helicase dbpA [Bacillus cereus R309803]
          Length = 481

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 136/324 (41%), Gaps = 42/324 (12%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTAT------PIPRTLVLTSLGDIDISKITEKPAG--R 455
             F  Q    + +  T    +L +AT       + RT  + S   I+I     K AG   
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSATLPEDVEKLSRTY-MNSPTHIEI-----KAAGITT 214

Query: 456 KPIKTVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
             I+  +  +   +E +  LK V + E   +  I  + +E  +  +R + +R N   +  
Sbjct: 215 DKIEHTLFEVGE-EEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-KRVNYPCDK- 271

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      +
Sbjct: 272 ------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKES 325

Query: 575 QLHQLRGRVGRGEEISSCILLYHP 598
            +H+  GR GR  +    I    P
Sbjct: 326 YVHRT-GRTGRAGKKGKAITFITP 348


>gi|104783928|ref|YP_610426.1| ATP-dependent RNA helicase DbpA [Pseudomonas entomophila L48]
 gi|95112915|emb|CAK17643.1| ATP-dependent RNA helicase [Pseudomonas entomophila L48]
          Length = 461

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 133/318 (41%), Gaps = 30/318 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I Q   GSGKT    I +   +     G QA+++ P   LA Q  + +++  +    I +
Sbjct: 47  IAQAKTGSGKTAAFGIGLLNPINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKI 106

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  +    L+L     +++DE  R  
Sbjct: 107 LTLCGGVSLGPQIASLE---HG-AHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRM- 161

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L          ++  TP  R TL+ ++     I ++  K   R+P +  +  ++
Sbjct: 162 ------LDMGFFDAIASIIGKTPSRRQTLLFSATYPAGIEQLA-KDFMRQPQQVKVEALH 214

Query: 467 RIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI---I 521
              ++ +R   +  + +      +      +    F    ++   L  H T+   +   +
Sbjct: 215 SDSQIEQRFIEIDPQQRLEAVTRVLGHYRPQSCVAFCFTKQQCEDLVTHLTAKGIVAQAL 274

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR- 580
           HG +   D++ V+  F N +  +L+AT V   G+D+    ++I  N E    A++H  R 
Sbjct: 275 HGDLEQRDRDQVLTMFANRSSSVLVATDVAARGLDIDGLDLVI--NVELARDAEIHVHRV 332

Query: 581 GRVGRGEEISSCILLYHP 598
           GR GR  E    I L  P
Sbjct: 333 GRTGRAGEKGVAISLVAP 350


>gi|332829836|gb|EGK02478.1| hypothetical protein HMPREF9455_01435 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 461

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 122/291 (41%), Gaps = 38/291 (13%)

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           N+   IL    GSGKTL  L+ +   ++      Q +++ P   LA Q  +  KK    T
Sbjct: 47  NKQNTILLSPTGSGKTLAYLMPVLRLLKGDVKSVQCLVIVPSRELALQIEQVWKK--MGT 104

Query: 349 QIIVEIITGNMPQAHR-RKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVI 399
           +  V +  G     H     L  +++  A I+IGT    +D ++           L+L  
Sbjct: 105 KFKVNVCYG----GHSIDTELNNLSNPPA-ILIGTPGRLKDHLERKSFNPGSVKTLVLDE 159

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTATP---IPRTLVLTSLGDIDISKITEKPAG 454
            D+  + G Q  +   ++Q       +L++AT    IP  + + S   +D ++  E+   
Sbjct: 160 FDKSLQLGFQNDMNAIVSQFPNLQKRVLLSATSDVEIPDFVKMESPAILDYTQ--EEKND 217

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
              IK V+ P    D++    +++ S + + A   C         N R V ER + L   
Sbjct: 218 TLSIKLVLSP--EKDKIESLFQLICSLDSEPALIFC---------NHREVAERISDLLNK 266

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                   HG M   D+E V+  F+NG+   L+ T +   G+D+ +   +I
Sbjct: 267 EGIQTGYYHGGMDQDDREKVLIQFRNGSLNYLVTTDLAARGLDIPEMKHVI 317


>gi|328713283|ref|XP_001944776.2| PREDICTED: ATP-dependent DNA helicase Q5-like [Acyrthosiphon pisum]
          Length = 1075

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 150/360 (41%), Gaps = 58/360 (16%)

Query: 290 QKNRMLRILQG--DV------GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           QKN ++ IL+   DV      GSGK+L     + A + +    ++ +P+  L +   + +
Sbjct: 38  QKNAIIAILKRKFDVFVSMPTGSGKSLC--YQLPAVLHSPKVTIVFSPLIALMKDQVDHL 95

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII-------GTHALFQDSIQYY- 393
            +     +I  E I   MP++ R++ +  +   Q    +            F+  + Y  
Sbjct: 96  TRL----KIRAETINSKMPESERKRVINDLYATQVSTSLLYVTPEQAATDFFKGLLSYLV 151

Query: 394 ---KLILVIVDEQH---RFGVQQR---LKLTQ-KATAPHV--LLMTATPIPRTL--VLTS 439
              KL  ++VDE H   ++G   R   LKL   +    H+  + +TAT     +  ++T+
Sbjct: 152 RKNKLAYIVVDEAHCVSQWGHDFRPDYLKLGMLRELYLHIPWIALTATASADVVKDIMTA 211

Query: 440 LG-DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC----PQIEE 494
           L     +SK T  P  R  +   +I  + I    + LK  + +       C    P I  
Sbjct: 212 LCLKTPVSKFT-TPCFRSNLFYDVIFDDSITNSYQHLKDFIDQCLCDDLNCLEGTPNINP 270

Query: 495 KKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +         R + E   ++      SIA  H  + D ++ +V ++F +G  +++ AT
Sbjct: 271 LTQPCGIIYCRTRELTEEIATVLSRKGISIAPYHAGLKDKERLAVQEAFMSGHIQVITAT 330

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNS 604
               +GID      +I     H+G+       +Q  GR GR  +++ C  +YH   +KNS
Sbjct: 331 VSFGMGIDKATVRFVI-----HWGIPSSIPAYYQESGRAGRDGKLARC-RIYHSKQAKNS 384


>gi|324991997|gb|EGC23919.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK405]
          Length = 447

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 132/318 (41%), Gaps = 37/318 (11%)

Query: 302 VGSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIIT 356
            GSGKT   L+ +  M        QAVI AP   LA Q Y+  ++       +I V    
Sbjct: 47  TGSGKTHTFLLPIFQMLDEEADSVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYV 106

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQR 411
           G   +A +   LE     Q HI+IGT     D ++   L +      +VDE         
Sbjct: 107 GGTDKARQIGKLE---SSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDE-----ADMT 158

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINR 467
           L +   AT   +    A  +P+ L           K+  +P  +K    P+   I     
Sbjct: 159 LDMGFLATVDKI----AGRLPKDLQFLVFSATIPQKL--QPFLKKYLSNPVIEQIKTKTV 212

Query: 468 IDEVIERLKVVLSEGK----KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAI 520
           I + IE   ++ ++G+    + Y I   ++      F +   R + LH + T+    +A 
Sbjct: 213 IADTIENW-LLSTKGRDKNAQIYQISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAK 271

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG ++  +++ +M+  KN   + ++AT +   GID+   S +I +         +H++ 
Sbjct: 272 IHGDIAPRERKRIMNQVKNLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV- 330

Query: 581 GRVGRGEEISSCILLYHP 598
           GR GR     + I LY P
Sbjct: 331 GRTGRNGLPGTAITLYQP 348


>gi|306825763|ref|ZP_07459102.1| DNA replication factor Y [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432124|gb|EFM35101.1| DNA replication factor Y [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 798

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++ +     V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDNGKTAILLVPEISLTPQMTERFIARFGEK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              +    +     ++  G A +++G  +     I+   L ++I+DE+H    +Q
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPIK--NLGVIIIDEEHEASYKQ 393


>gi|253574214|ref|ZP_04851556.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846691|gb|EES74697.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 375

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 155/362 (42%), Gaps = 38/362 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +NV   + +K+      +PT  Q +AI  +LQ          I+Q   G+GKTL  L+ +
Sbjct: 8   LNVSPLLVRKLQGQGIVNPTPVQAAAIP-VLQSGEDA-----IVQAQTGTGKTLAFLLPI 61

Query: 315 AAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
              +       QA+I+ P   LA Q     +K  +  + +  +         R+  L ++
Sbjct: 62  LEKIRPERPEAQALIITPTRELAIQITAEARKLAEAMEGLSVLAAYGGQDVERQ--LRKL 119

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            +G A ++IGT     D ++   L L     +++DE       Q L +   A    +L +
Sbjct: 120 KNG-AQLVIGTPGRLLDHLRRGSLTLGAVRYLVLDE-----ADQMLHMGFLAEVEEILSL 173

Query: 427 TATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKVVLSEG 482
               +PR   T++ ++    ++ ++  K    KP    I   +R+  + I ++ V  ++ 
Sbjct: 174 ----VPRSRQTMLFSATMPGNVKRLA-KTYMDKPRDIQIAETSRVTLDSIRQILVECTDR 228

Query: 483 KKAYWICPQIEEKK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDS 536
            K   +   I  ++      F     R ++L+E   ++      +HG +S   +E VM +
Sbjct: 229 TKQSALIESIRSQRPYLAVIFCRTKRRASTLNEALQAAGFQSDELHGDLSQAKREQVMRA 288

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F++   +LL+AT V   GIDV   + +   +  H   + +H++ GR GR  E    +   
Sbjct: 289 FRSAKLELLVATDVAARGIDVEGVTHVFNYDIPHDVDSYIHRI-GRTGRAGEKGVAVTFA 347

Query: 597 HP 598
            P
Sbjct: 348 AP 349


>gi|195151757|ref|XP_002016805.1| GL21967 [Drosophila persimilis]
 gi|194111862|gb|EDW33905.1| GL21967 [Drosophila persimilis]
          Length = 415

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 132/326 (40%), Gaps = 66/326 (20%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+K QE+A+  +L D  Q      I Q   G+GKT   ++AM + V       Q + ++
Sbjct: 92  TPSKIQETALPTLLADPPQN----MIAQSQSGTGKTAAFVLAMLSRVNVNLNHPQVLCLS 147

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   +  Q    I       +  A R + ++R      HI+IGT     D
Sbjct: 148 PTYELAIQTGEVAARMGQYCPDI------KLRFAVRGEEVDRNKKITEHILIGTPGKMLD 201

Query: 389 SIQYYKLI------LVIVDEQHRF----GVQQRLKLTQKATAPH--VLLMTATPIPRTLV 436
               ++L       + ++DE        G   +     K   PH  +L  +AT     + 
Sbjct: 202 WGYKFRLFDMKKISVFVLDEADVMIATQGHHDQCIRIHKMLNPHCQMLFFSATYDREVMD 261

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              L       I  +P         II +NR  E ++ +K         Y++  + E+ K
Sbjct: 262 FAQL-------IVTEPT--------IIRLNREQESLDNIK--------QYYVKCKNEDGK 298

Query: 497 ESNFRSVVERFN---------------SLHEHFTS---SIAIIHGRMSDIDKESVMDSFK 538
            +  +++    +                L    TS   S+A++ G ++   + +V+D F+
Sbjct: 299 YNAIQNIYGCISIGQAIIFCHTRRTAAWLASKMTSDGHSVAVLSGDLTVDQRLAVLDRFR 358

Query: 539 NGTCKLLIATTVIEVGIDVVDASIII 564
           +G  K+LI T V+  GID+   +I++
Sbjct: 359 SGLEKVLITTNVLSRGIDIEQVTIVV 384


>gi|157693344|ref|YP_001487806.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus pumilus
           SAFR-032]
 gi|157682102|gb|ABV63246.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus pumilus
           SAFR-032]
          Length = 480

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 500 FRSVVERFNSLH---EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F +  +R N L    + +      IHG M   D+ +VMD FKNG  + LIAT +   GID
Sbjct: 248 FCNTQDRVNELTMKLDEWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIATDIAARGID 307

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           V D + +I  +  +     +H+  GR GR 
Sbjct: 308 VSDMTHVIHYDLPYEKERYIHRT-GRTGRA 336


>gi|148827918|ref|YP_001292671.1| frataxin-like protein [Haemophilus influenzae PittGG]
 gi|148719160|gb|ABR00288.1| frataxin-like protein [Haemophilus influenzae PittGG]
          Length = 619

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 134/327 (40%), Gaps = 63/327 (19%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK+L   I    A+   G  ++++P+  L +   + +    Q   I  + +  +   
Sbjct: 52  TGNGKSLCYQIP---ALCFDGLTLVISPLISLMKDQVDQL----QANGIEADFLNSSQTL 104

Query: 362 AHRRKALERIAHGQAHII------IGTHALFQDSIQYYKLILVIVDEQH---RFGVQQRL 412
           A +++   ++  GQ  ++      + T++ FQ  I Y K+  + +DE H   ++G   R 
Sbjct: 105 AQQQQVQNKLISGQLKLLYVSPEKVMTNSFFQ-LISYSKVCFIAIDEAHCISQWGHDFRP 163

Query: 413 KLTQ----KATAPH--VLLMTATP-------IPRTLVLTSL----GDIDISKITEKPAGR 455
           + TQ    KA+ P   ++ +TAT        I R L L +L    G  D      +P  R
Sbjct: 164 EYTQLGGLKASFPDAPIMALTATADYATQQDILRHLNLKNLHKYIGSFD------RPNIR 217

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             ++    P+ ++        V+  +GK     C         N R+ VER      +  
Sbjct: 218 YTLEEKYKPMEQLTRF-----VLAQKGKSGIIYC---------NSRNKVERIAESLRNKG 263

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            S A  H  M    +E V   F+    ++++AT    +GI+  +   +      HF L +
Sbjct: 264 VSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFV-----AHFDLPR 318

Query: 576 ----LHQLRGRVGRGEEISSCILLYHP 598
                +Q  GR GR +  +  +L Y P
Sbjct: 319 SIESYYQETGRAGRDDLPAEAVLFYEP 345


>gi|332285242|ref|YP_004417153.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
 gi|330429195|gb|AEC20529.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
          Length = 455

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG  S +D+   +D+FK G  ++L+AT V   G+DV     +I  +  +     +H++ 
Sbjct: 288 IHGDKSQLDRMKALDAFKAGELEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRI- 346

Query: 581 GRVGRGEEISSCILLYHP 598
           GR GR       I  + P
Sbjct: 347 GRTGRAGNTGEAIAFFTP 364


>gi|302392742|ref|YP_003828562.1| DEAD/DEAH box helicase domain protein [Acetohalobium arabaticum DSM
           5501]
 gi|302204819|gb|ADL13497.1| DEAD/DEAH box helicase domain protein [Acetohalobium arabaticum DSM
           5501]
          Length = 527

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 134/321 (41%), Gaps = 58/321 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I +   ++      QA+++ P   LA Q  E I +  +  + I  
Sbjct: 45  IGQAQTGTGKTAAFGIPILEKIDPDDKSVQALVLCPTRELAIQVSEEIGRLAKYKRKIKT 104

Query: 354 I-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF- 406
           + + G      + KAL++       I+IGT     D     ++++  L +VI+DE     
Sbjct: 105 LPVYGGQSIKRQIKALKK----GVQIVIGTPGRTMDHMRRGTLKFDNLKMVILDEADEML 160

Query: 407 -------------GVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
                        GV+ +R  +   AT P  +L         L      D +I K+  K 
Sbjct: 161 NMGFRDDIETILEGVKGKRQTIFFSATMPQSIL--------KLRKKYQTDPEIVKVVHKK 212

Query: 453 AGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
                I+     +NR +  EV+ RL + +   K +   C         N R  V+     
Sbjct: 213 LTVPNIEQGYFEVNRRNKLEVLSRL-IDIYNPKLSIVFC---------NTRKQVDELTIQ 262

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIE 566
            +     +  IHG ++   ++ VM+ FKNGT + L+AT V   GIDV D   +    I +
Sbjct: 263 LQARGYFVDGIHGGLNQPQRDRVMNKFKNGTIETLVATDVAARGIDVDDVEAVFNYDIPQ 322

Query: 567 NAEHFGLAQLHQL--RGRVGR 585
           + E++    +H++   GRVGR
Sbjct: 323 DIEYY----VHRIGRTGRVGR 339


>gi|296194573|ref|XP_002745045.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Callithrix jacchus]
          Length = 724

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 140/344 (40%), Gaps = 78/344 (22%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+ + A +   G            + +I+AP   L  Q Y   +K++  T 
Sbjct: 334 TGSGKTAAFLLPILAHMMRDGVTASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTC 393

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   +I G     H   ++ +I  G  +I+  T     D I   K+ L     +++DE  
Sbjct: 394 VRAVVIYGGTQLGH---SIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQIKYLVLDEAD 449

Query: 405 R-----FG--------------VQQRLKLTQKATAPH-VLLMTATPIPRTLVLTSLGDID 444
           R     FG               +QR  L   AT P  +  + A  +    +  ++G + 
Sbjct: 450 RMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQV- 508

Query: 445 ISKITEKPAGRKPIKTV--IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
                   A R   +TV  +   ++ ++++E L+ +  E    +     +E KK+++F  
Sbjct: 509 ------GGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVF-----VETKKKADF-- 555

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +  F    +  T+SI   HG     ++E  +  F++G C +L+AT+V   G+D      
Sbjct: 556 -IATFLCQEKISTTSI---HGDREQREREQALGDFRSGKCPVLVATSVAARGLD------ 605

Query: 563 IIIENAEH---FGLAQ-----LHQLRGRVGRGEEISSCILLYHP 598
             IEN +H   F L       +H++ GR GR       I  + P
Sbjct: 606 --IENVQHVINFDLPSTIDEYVHRI-GRTGRCGNTGRAISFFDP 646


>gi|284921218|emb|CBG34284.1| ATP-independent RNA helicase [Escherichia coli 042]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGNLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|269104260|ref|ZP_06156956.1| excinuclease ABC subunit B [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268160900|gb|EEZ39397.1| excinuclease ABC subunit B [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 650

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 31/179 (17%)

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P  L ++ATP          G+ ++SK     A    ++ +I P   +D  IE    V S
Sbjct: 388 PQTLFVSATP----------GNYELSK-----AKTPVVEQIIRPTGLLDPTIE----VRS 428

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFN-----SLHEHFTSS---IAIIHGRMSDIDKES 532
              +   +  +I+ + E   R++V         SL+E+       ++ +H  +   D+  
Sbjct: 429 SSNQISNLLDEIKIRIEKGERTLVNTLTKKSAESLYEYMQEQSFKVSYLHSDVKTEDRVR 488

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL----AQLHQLRGRVGRGE 587
           +++  + G   +LI   ++  G+D+ +AS++ I +A+H G     A L Q+ GR  R +
Sbjct: 489 IIEQLRAGELDILIGINLLREGLDIPEASLVAILDADHAGFLRSKAALIQIIGRAARNK 547


>gi|195432312|ref|XP_002064167.1| GK20023 [Drosophila willistoni]
 gi|194160252|gb|EDW75153.1| GK20023 [Drosophila willistoni]
          Length = 1234

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 156/366 (42%), Gaps = 50/366 (13%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----- 318
           +LR + F  PT  Q  AI  I   MS ++ ++ I +   GSGKTL  ++ M   +     
Sbjct: 543 VLRKLGFEKPTPIQCQAIPAI---MSGRD-LIGIAK--TGSGKTLAFILPMFRHILDQPQ 596

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  A+IMAP   L  Q  + I++++++  +    + G    + +   L+R     
Sbjct: 597 LEDGDGAIAIIMAPTRELCMQIGKDIRRFSKSLGLCPVCVYGGTGISEQIAELKR----G 652

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF---GVQ-QRLKLTQKATAPHV 423
           A II+ T     D +           ++  +++DE  R    G + Q +++         
Sbjct: 653 AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQ 712

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +M +   PR +   +   +           +KPI+ ++   + + + +E+  V+L++  
Sbjct: 713 TVMFSATFPRQMEALARRIL-----------KKPIEVIVGGRSVVCKDVEQHAVILNDDA 761

Query: 484 KAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDS 536
           K + +   +   +E+     F    E  + L      +      +HG +   D++S +  
Sbjct: 762 KFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIID 821

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR  +  S     
Sbjct: 822 FKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRC-GRTGRAGKKGSAYTFI 880

Query: 597 HPPLSK 602
            P  S+
Sbjct: 881 TPEQSR 886


>gi|327479422|gb|AEA82732.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
          Length = 441

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 143/341 (41%), Gaps = 41/341 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGG--QA 324
           PT  Q  AI  +L     K R L +     G+GKT      L+  + M  A  A    +A
Sbjct: 24  PTPVQAEAIPAVL-----KGRDL-MAAAQTGTGKTAGFALPLLQRLTMEGAKVASNSVRA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHIII 380
           +++ P   LA+Q +E  + Y QN  +    + G +   PQ    RK ++ +      ++ 
Sbjct: 78  LVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMALRKGIDVLVATPGRLL- 136

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
                 Q+++ + +L  +++DE  R      L   ++  A    L +A P  R  +L S 
Sbjct: 137 --DLYRQNAVGFAQLQALVLDEADRM---LDLGFAEELDA----LFSALPKKRQTLLFSA 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
              +  +   +   R P+   + P N   + +++  V + + +K+      + E++    
Sbjct: 188 TFSEPIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLHLLAERRWGQV 247

Query: 501 -------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + V +  + L     +S AI HG      +   ++ FK G  ++L+AT V   
Sbjct: 248 LVFVKTRKGVDQLVDELQAQGIASDAI-HGDKPQASRLRALERFKAGEVQVLVATDVAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
           G+D+ D   ++  +        +H++ GR GR    GE IS
Sbjct: 307 GLDIHDLPQVVNFDLPIVAEDYVHRI-GRTGRAGASGEAIS 346


>gi|312277771|gb|ADQ62428.1| Superfamily II DNA/RNA helicase required for DNA uptake (Late
           competence protein) [Streptococcus thermophilus ND03]
          Length = 439

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 142/336 (42%), Gaps = 50/336 (14%)

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQN 347
           + KN+   ++    G+GKT +    +A  +E   + VI +P + +  +      K +T +
Sbjct: 109 TYKNQKHSLVHAVTGAGKTEMIYNIVAYVLENKNRVVIASPRVDVCRELFLRMQKDFTCS 168

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             ++               A      G   +I  TH L +    Y+   L+IVDE   F 
Sbjct: 169 ISLL--------------HADSEPYDGSPLVIATTHQLLKF---YHSFDLIIVDEVDAFP 211

Query: 408 VQQRLKLTQ-----KATAPHVLLMTATPIPRTLVL---TSLGDIDISKITEKPAGRKPIK 459
               + L       K      + +TAT    TL L     LG I+   +  +  G     
Sbjct: 212 FVGNVMLNHAVKQAKTETGRYIYLTAT---STLALEEQVRLGAIEKHHLASRFHG----N 264

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV--------ERFN-SL 510
            +++P         RL+  L+  K    +  QI+++++SNF  ++        E+F+ +L
Sbjct: 265 PLVLPCFFWQ---GRLQKSLTSDKLPRPLIHQIKKQRKSNFPLLIFFPNIALGEKFSITL 321

Query: 511 HEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            ++  T +IA +  +    ++ ++++ F+     +L+ TT++E G+      + +     
Sbjct: 322 KKYLPTENIAFVSSKSE--ERSTIVEKFRKKELSILVTTTILERGVTFSQVDVFVCMANH 379

Query: 570 H-FGLAQLHQLRGRVGRG-EEISSCILLYHPPLSKN 603
           H +  + L Q+ GRVGR  E  +  +  +H  LSK+
Sbjct: 380 HLYTSSSLIQIGGRVGRSPERPTGKLYFFHEGLSKS 415


>gi|226357411|ref|YP_002787150.1| ATP-independent RNA helicase [Deinococcus deserti VCD115]
 gi|226319401|gb|ACO47396.1| putative ATP-independent RNA helicase [Deinococcus deserti VCD115]
          Length = 469

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 138/330 (41%), Gaps = 54/330 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           + Q + GSGKT+   I +   ++      Q +++ P   LA Q    +++  +    I V
Sbjct: 45  LAQAETGSGKTVAFGIGILHRLDPARLKVQGLVLCPTRELADQVANELRRLARGEGNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             +TG +P  H+  +LE   HG  HI++GT    +D +    + L   ++ H   + +  
Sbjct: 105 LTLTGGVPLRHQVTSLE---HG-VHIVVGTPGRIRDHLARGSINL---EDVHTLVLDEAD 157

Query: 413 KLTQKATAPHVL-LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI--------- 462
           ++T       +  ++ A P  R  +L S    D  K T       P++ V+         
Sbjct: 158 RMTDMGFYDEMASIVCACPRTRQTLLFSATYPDNIKQTTAEFLNDPVEVVVDAQHTATQI 217

Query: 463 ------IPINRIDEVIERL-------KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
                 I  +  D  I RL         ++    + +  C ++ E+ ++      + F++
Sbjct: 218 KQLFYEIGFDERDAAIGRLLNHFKPLSTLVFCNTRVH--CRELAEELQA------QGFSA 269

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L          +HG +   +++ ++  F N +C +L+AT V   G+D+  + +  + NA+
Sbjct: 270 LG---------LHGDLEQRERDEILVLFSNRSCSVLVATDVAARGLDI--SRLDAVMNAD 318

Query: 570 HFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
                ++H  R GR GR  E    + L  P
Sbjct: 319 VSRDTEVHVHRVGRTGRAGEAGLALTLCSP 348


>gi|115452607|ref|NP_001049904.1| Os03g0308500 [Oryza sativa Japonica Group]
 gi|122247124|sp|Q10MH8|RH24_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 24
 gi|108707754|gb|ABF95549.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113548375|dbj|BAF11818.1| Os03g0308500 [Oryza sativa Japonica Group]
 gi|215737377|dbj|BAG96306.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 770

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 125/315 (39%), Gaps = 51/315 (16%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   ++ M   +        E G   V+ AP   LA Q Y   KK+ +   + V 
Sbjct: 265 TGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVA 324

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G + +  + K L+        I+I T     D     +++ ++   +++DE  R   
Sbjct: 325 AVYGGVSKFDQFKELK----AGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFD 380

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKT 460
             F  Q R  + Q       LL +AT +P     L    L D              PI+ 
Sbjct: 381 LGFEPQIRSIVGQIRPDRQTLLFSAT-MPYKVERLAREILTD--------------PIRV 425

Query: 461 VIIPINRIDEVIERLKVVL-SEGKKAYWICPQ----IEEKKESNFRSVVERFNSLHEHFT 515
            +  +   +E I+++  VL S+ +K  W+  +    I++     F +   R + +     
Sbjct: 426 TVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLPGMIDDGDVLVFAAKKARVDEIESQLN 485

Query: 516 SS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                IA +HG      +   +  FK+G   +L+AT V   G+D+   SI  + N +   
Sbjct: 486 QRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAARGLDI--KSIKTVVNFDIAK 543

Query: 573 LAQLHQLR-GRVGRG 586
              +H  R GR GR 
Sbjct: 544 EMDMHIHRIGRTGRA 558


>gi|110635542|ref|YP_675750.1| primosome assembly protein PriA [Mesorhizobium sp. BNC1]
 gi|110286526|gb|ABG64585.1| replication restart DNA helicase PriA [Chelativorans sp. BNC1]
          Length = 726

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L G  GSGKT V   A+AAA++ G Q +I+ P   L Q    F+ ++            
Sbjct: 218 LLDGVTGSGKTEVYFEAVAAALDRGKQVLILLPEIALTQA---FLDRFHDRFGAKPAEWH 274

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH 404
            ++    R +   ++A GQ  ++ G   ALF   + +  L L++VDE+H
Sbjct: 275 SDLAPRKRERVWRQVAEGQVRVVAGARSALF---LPFRDLGLIVVDEEH 320


>gi|325288076|ref|YP_004263866.1| ATP-dependent DNA helicase, RecQ family [Cellulophaga lytica DSM
           7489]
 gi|324323530|gb|ADY30995.1| ATP-dependent DNA helicase, RecQ family [Cellulophaga lytica DSM
           7489]
          Length = 632

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 9/83 (10%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF----G 572
           +    HG +   DK++V++++ N T K+++AT    +GID  D  +++     H+     
Sbjct: 253 ATTFFHGGVPKKDKKTVLNNWLNNTTKIIVATNAFGMGIDKPDVRLVV-----HYQIPDS 307

Query: 573 LAQLHQLRGRVGRGEEISSCILL 595
           +   +Q  GR GR ++ SS ILL
Sbjct: 308 IENYYQEAGRAGRDQQESSAILL 330


>gi|320539522|ref|ZP_08039189.1| Primosome factor n' (replication factor Y) [Serratia symbiotica
           str. Tucson]
 gi|320030375|gb|EFW12387.1| Primosome factor n' (replication factor Y) [Serratia symbiotica
           str. Tucson]
          Length = 731

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ +     V+++
Sbjct: 220 LLAGVTGSGKTEVYLSVLENILAKGRQALVLVPEIGLTPQT----IARFRERFNAPVDVL 275

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   G+  IIIGT  ALF     + +L L+I+DE+H    +Q+
Sbjct: 276 HSGLNDSERLAVWLRARSGEVAIIIGTRSALFSP---FQRLGLIIIDEEHDSSYKQQ 329


>gi|312278595|gb|ADQ63252.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           thermophilus ND03]
          Length = 360

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 158/367 (43%), Gaps = 56/367 (15%)

Query: 276 SQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAPIGI 332
           + E+AI K++   +++   +L I     G+GKTL  L  +  +++     Q +I+AP   
Sbjct: 19  TTETAIQKELFTPITEGENILGI--SPTGTGKTLAYLFPLLLSLKPKKAQQLLILAPNSE 76

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA Q ++  K++ +   I  ++    +  + +++ +ER+  G   I+IGT     + I+ 
Sbjct: 77  LAGQIFDVTKQWAEPLGITAQLF---LSGSSQKRQIERLKKG-PEILIGTPGRVFELIKL 132

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            K+ ++ V+        + L  +Q     H +   +  +PR   +  +        T K 
Sbjct: 133 KKIKMMNVNTIVLDEFDELLSDSQY----HFVTKISHHVPRNHQMIYIS------ATNKI 182

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--------SNFRSVV 504
             R  ++  I+     D   + L  +     K Y+I      + E         NFR +V
Sbjct: 183 DSRDLVENTIV----YDLSNQELDTI-----KHYYISVDKRNRVELLRKFSNIPNFRGLV 233

Query: 505 ERFNSLHE--------HFTSSIAIIHGRMSDID---KESVMDSFKNGTCKLLIATTVIEV 553
             FNSL +         F  + A+     SDI+   ++ +++ FKN    LL+ T ++  
Sbjct: 234 -FFNSLSDLGATEERLQFNGASAV--SLASDINVKFRKVILEKFKNHEISLLLGTDLLAR 290

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHP----PLSKNSYTRL 608
           GID+ +  ++I  +      A  H+  GR GR G E     L+ HP     L K +    
Sbjct: 291 GIDIENLEVVINFDIPRDREAYTHR-SGRTGRMGNEGRVISLVSHPEDLKKLKKFAKVSE 349

Query: 609 SVLKNTE 615
            VLKN E
Sbjct: 350 IVLKNQE 356


>gi|296118823|ref|ZP_06837399.1| ATP-dependent RNA helicase DeaD [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968312|gb|EFG81561.1| ATP-dependent RNA helicase DeaD [Corynebacterium ammoniagenes DSM
           20306]
          Length = 407

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 24/139 (17%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++  +HG ++   +E  +  F++GT  +L+AT V   GIDV D + +I        +  +
Sbjct: 269 TVGAVHGDLNQQAREQALAGFRDGTVPILVATDVASRGIDVEDVTHVINYQVPDDAMTYV 328

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           H++ GR GR     + I L                     G+   +E LK +     LG+
Sbjct: 329 HRI-GRTGRAGHSGTAITLV--------------------GY---DELLKWQGINSELGL 364

Query: 637 KQSGMPKFLIAQPELHDSL 655
           +Q   P++    PE  D L
Sbjct: 365 EQPEPPQWFSTSPEFIDKL 383


>gi|114571346|ref|YP_758026.1| primosome assembly protein PriA [Maricaulis maris MCS10]
 gi|114341808|gb|ABI67088.1| primosomal protein N' [Maricaulis maris MCS10]
          Length = 727

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 11/112 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--EAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVE 353
           +L G  GSGKT V   A+A  +  E G Q +IM P I +       F  ++     +   
Sbjct: 221 LLDGVTGSGKTEVYFEAIAEVLRREPGAQILIMLPEIALTEAVLSRFKARFGVEPALW-- 278

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH 404
             +G  P+A RR+A   +A G+A I++G   +LF   + + KL +VIVDE+H
Sbjct: 279 -HSGASPKA-RRRAWREVAEGRARIVVGARSSLF---LPFPKLRMVIVDEEH 325


>gi|70996346|ref|XP_752928.1| DEAD box RNA helicase HelA [Aspergillus fumigatus Af293]
 gi|74672187|sp|Q4WRP2|MS116_ASPFU RecName: Full=ATP-dependent RNA helicase mss116, mitochondrial;
           Flags: Precursor
 gi|66850563|gb|EAL90890.1| DEAD box RNA helicase HelA, putative [Aspergillus fumigatus Af293]
 gi|159131682|gb|EDP56795.1| DEAD box RNA helicase HelA, putative [Aspergillus fumigatus A1163]
          Length = 655

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 90/396 (22%), Positives = 157/396 (39%), Gaps = 98/396 (24%)

Query: 281 IKDILQDMS-------QKNRMLRILQGD-------VGSGKTLVALIAM------------ 314
           I+ I++DM+       Q   +  ILQGD        G+GKTL  L  +            
Sbjct: 96  IRAIVKDMNIKTMTDVQSQTLREILQGDDVLAQAKTGTGKTLAFLTPVFQNIMKDPSLKG 155

Query: 315 -----AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                + A  +  +A+I++P   LA+Q     ++   ++ +IV+   G      +R+ L 
Sbjct: 156 LNWRRSQASSSDIRAIIISPTRELAEQIAVEARRLAAHSGVIVQTAVGG---TQKREGLR 212

Query: 370 RIAHGQAHIIIGTHALFQD-------SIQYYKLILVIVDEQHRF---GVQ------QRLK 413
           RI     H++IGT    +D        +    L  +++DE  R    G        QRL 
Sbjct: 213 RIQREGCHVLIGTPGRLKDVLSDSYNGVTAPNLSTLVLDEADRLLDDGFSDAIIDIQRLL 272

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                     L+ +AT +PR +       + + + T KP   K +KTV     R DEV  
Sbjct: 273 PDPMKVDRQTLMFSAT-VPREV-------MQMVRKTMKP-NFKFVKTV-----RDDEVPT 318

Query: 474 RL----KVVLSEGKKAY------WICPQIEEKKES----NFRSVVERFNS------LHEH 513
            L    K V+  G +        ++   +E +KE+     F+++V  FNS      ++E 
Sbjct: 319 HLTVPQKYVILRGYENAMPALLEFVTKYVEGEKENPNQRPFKAIVY-FNSTVQTNLVYET 377

Query: 514 FTS------------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           F +             +  IH +++   +    D F+     +L ++ V   G+D  D +
Sbjct: 378 FRNIVEQRHHPLRRVRVYEIHSQLTQARRTRSSDFFRAAKSAILFSSDVTARGMDFPDVT 437

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +I  +        +H+L GR  R  +     +L H
Sbjct: 438 HVIQVSIPRDRATYIHRL-GRTARANKTGEGWVLTH 472


>gi|328772988|gb|EGF83025.1| hypothetical protein BATDEDRAFT_29115 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 483

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 140/348 (40%), Gaps = 59/348 (16%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +     + A        G   +I+AP   LA Q      K+  +++I 
Sbjct: 99  AETGSGKTLAYTLPSIVHINAQPLLKPGDGPIVLILAPTRELAIQIQVECNKFGSSSRIK 158

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF 406
              + G +P+  + + LER       I I T     D ++  K  L     +++DE  R 
Sbjct: 159 NTCLYGGVPKGPQMRDLER----GIEICIATPGRLIDMLESGKTNLKRVTYLVLDEADRM 214

Query: 407 ---GVQQRLK------------LTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS---KI 448
              G + +++            L   AT P  +   A    +  +  ++G +++S    I
Sbjct: 215 LDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQALARDYQKEFIQVNVGSMELSASHNI 274

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
           T+       I  +    ++   + + L+ ++S   +   I    +   +   R +     
Sbjct: 275 TQ-------IVEICPSHDKRHRLYKLLEDIMSNADQKTIIFTGTKRTADDITRDL----- 322

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII---- 564
             H+ F +    IHG     +++ VM  FK+G   +LIAT V   G+DV D   +I    
Sbjct: 323 -RHDGFPA--LAIHGDKKQQERDWVMQEFKSGKTPILIATDVAARGLDVKDVKFVINFDF 379

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             N E +    +H++ GR GR     +   L+ P   K++   + +L+
Sbjct: 380 PNNIEDY----VHRI-GRTGRANNKGTAYTLFSPDNFKSARDLVKILE 422


>gi|310766035|gb|ADP10985.1| Primosomal protein N' [Erwinia sp. Ejp617]
          Length = 732

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   + +G QA+++ P IG+  Q     I +++Q     V+++
Sbjct: 221 LLAGITGSGKTEVYLSVLENVLASGHQALVLVPEIGLTPQT----IARFSQRFNAPVDVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   G+  I+IGT  ALF     + +L  +++DE+H    +Q+
Sbjct: 277 HSALNDSERLAVWLRARSGETAIVIGTRSALF---TPFARLGAIVIDEEHDSSYKQQ 330


>gi|258625664|ref|ZP_05720543.1| Primosomal protein N' [Vibrio mimicus VM603]
 gi|258581902|gb|EEW06772.1| Primosomal protein N' [Vibrio mimicus VM603]
          Length = 734

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    S +     +L+G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 199 PKLNQEQAIA-IASVNSHQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 258 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 312 FAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAYLENIPIVLGSATPALETLHNALSG 371

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 372 KYHHLQLTQRAGNALPTRN 390


>gi|225579808|gb|ACN94086.1| unknown [Drosophila melanogaster]
          Length = 1198

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 159/367 (43%), Gaps = 50/367 (13%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AA 316
           ++LR + F  PT  Q  AI  I   MS ++ ++ I +   GSGKTL  ++ M        
Sbjct: 523 EVLRRLGFEKPTPIQCQAIPAI---MSGRD-LIGIAK--TGSGKTLAFILPMFRHILDQP 576

Query: 317 AVEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++E G  A+  IMAP   L  Q  + I+K++++  +    + G    + +   L+R    
Sbjct: 577 SMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR---- 632

Query: 375 QAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF---GVQ-QRLKLTQKATAPH 422
            A II+ T     D +           ++  V++DE  R    G + Q +++        
Sbjct: 633 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDR 692

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
             +M +   PR +   +   +           +KPI+ ++   + + + +E+  V+L++ 
Sbjct: 693 QTVMFSATFPRQMEALARRIL-----------KKPIEVIVGGRSVVCKEVEQHVVILNDD 741

Query: 483 KKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
            K + +   +   +E+     F    E  + L      +      +HG +   D++S + 
Sbjct: 742 AKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTII 801

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR  +  S    
Sbjct: 802 DFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRC-GRTGRAGKKGSAYTF 860

Query: 596 YHPPLSK 602
             P  S+
Sbjct: 861 ITPEQSR 867


>gi|225579799|gb|ACN94078.1| unknown [Drosophila melanogaster]
          Length = 1195

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 159/367 (43%), Gaps = 50/367 (13%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AA 316
           ++LR + F  PT  Q  AI  I   MS ++ ++ I +   GSGKTL  ++ M        
Sbjct: 523 EVLRRLGFEKPTPIQCQAIPAI---MSGRD-LIGIAK--TGSGKTLAFILPMFRHILDQP 576

Query: 317 AVEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++E G  A+  IMAP   L  Q  + I+K++++  +    + G    + +   L+R    
Sbjct: 577 SMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR---- 632

Query: 375 QAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF---GVQ-QRLKLTQKATAPH 422
            A II+ T     D +           ++  V++DE  R    G + Q +++        
Sbjct: 633 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDR 692

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
             +M +   PR +   +   +           +KPI+ ++   + + + +E+  V+L++ 
Sbjct: 693 QTVMFSATFPRQMEALARRIL-----------KKPIEVIVGGRSVVCKEVEQHVVILNDD 741

Query: 483 KKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
            K + +   +   +E+     F    E  + L      +      +HG +   D++S + 
Sbjct: 742 AKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTII 801

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR  +  S    
Sbjct: 802 DFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRC-GRTGRAGKKGSAYTF 860

Query: 596 YHPPLSK 602
             P  S+
Sbjct: 861 ITPEQSR 867


>gi|228921162|ref|ZP_04084492.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838478|gb|EEM83789.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 458

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 135/316 (42%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++      QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPASSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKLRVSKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNFDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|187731861|ref|YP_001880183.1| ATP-dependent RNA helicase DbpA [Shigella boydii CDC 3083-94]
 gi|187428853|gb|ACD08127.1| ATP-independent RNA helicase DbpA [Shigella boydii CDC 3083-94]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 128/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  + + +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|70726359|ref|YP_253273.1| hypothetical protein SH1358 [Staphylococcus haemolyticus JCSC1435]
 gi|68447083|dbj|BAE04667.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 448

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 147/328 (44%), Gaps = 49/328 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYE---FIKKYTQNTQI 350
           I Q   G+GK+   L+ +   ++      Q++++AP   LAQQ Y+    +  + Q  ++
Sbjct: 45  IGQSQTGTGKSHAFLLPLIDKIDVENKEPQSIVVAPTRELAQQLYQAANHLATFKQGIKV 104

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQH- 404
            + I   ++ +  +R +       Q  ++IGT     D  Q   L       +IVDE   
Sbjct: 105 SLFIGGTDIEKDRQRTS------NQPQLVIGTPTRINDLAQSGHLHAHLASYLIVDEADL 158

Query: 405 --RFGVQQRLKL--TQKATAPHVLLMTATPIPRTL---VLTSLGDIDISKITEKPAGRKP 457
               G+ + + L  ++     H+ + +AT IP++L   +   L + +  ++  K   +K 
Sbjct: 159 MIDLGLIEDVDLIASRLDENSHIAVFSAT-IPKSLQPFLNKYLSNPEYVEVDSKSQNKKN 217

Query: 458 IKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           I+  +IP    ++V + L+++  L+      ++C      +++      E  NSL+    
Sbjct: 218 IEFYLIPTKGTEKVDKTLQLIDILNP-----YLCIVFCNSRDN----ADELANSLNAAGI 268

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + +IHG ++  +++  M   +N   + +IA+ +   GID+   S +I     +F + +
Sbjct: 269 K-VGMIHGGLTPRERKQQMKRIRNLEFQFVIASDLASRGIDIEGVSHVI-----NFDVPK 322

Query: 576 -----LHQLRGRVGRGEEISSCILLYHP 598
                 H++ GR GRG      I LY P
Sbjct: 323 DIDFFTHRV-GRTGRGNYKGVAITLYSP 349


>gi|302813501|ref|XP_002988436.1| hypothetical protein SELMODRAFT_127995 [Selaginella moellendorffii]
 gi|300143838|gb|EFJ10526.1| hypothetical protein SELMODRAFT_127995 [Selaginella moellendorffii]
          Length = 497

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 134/337 (39%), Gaps = 76/337 (22%)

Query: 303 GSGKTL---VALIAMAAAVEAGGQ-----------AVIMAPIGILAQQHYEFIKKYTQNT 348
           GSGKTL   + +IA    + +GG            A+++ P   L+ Q  +  K   +  
Sbjct: 150 GSGKTLSFLLPIIARCCKIRSGGPDEDDETSRPPLAMVLTPTRELSSQVEDHAKILAKGL 209

Query: 349 QIIVEIITGN--MPQ-AHR-RKALERIAHGQAHIIIGTHALFQD------SIQYYKLILV 398
                ++ G   MPQ A+R RK +E        +I+GT     D       +   K+ ++
Sbjct: 210 PFKTALVVGGDVMPQQAYRIRKGVE--------LIVGTPGRLLDVLSRHEDVNLAKVSVL 261

Query: 399 IVDEQ----HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           ++DE      R   +Q +++ +    P V+L +AT  P      +     +  I+  P G
Sbjct: 262 VLDEVDCMLERGFREQVMQIVRALPTPQVMLFSATVPPEIEKFATSIAKSLMVISAGPPG 321

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
                    P   + + +              W+  + ++KK  +F     RF      F
Sbjct: 322 --------APTGAVQQTV-------------VWVETKNKKKKLFDFLQSSSRFQPPGVVF 360

Query: 515 TSS------------------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +S                   A +HG  +  ++  V+ SF  G+  +++AT V+  G+D
Sbjct: 361 VNSRLGAELLADAISKVTKLRCASLHGHKAMKERREVLKSFLVGSLDVIVATGVLGRGLD 420

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           ++ A+ +II +  +      HQL GR  R +E  + I
Sbjct: 421 LLRATQVIIFDMPNTVQEYTHQL-GRASRLDEPGTAI 456


>gi|296117857|ref|ZP_06836440.1| putative ATP-dependent RNA helicase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969088|gb|EFG82330.1| putative ATP-dependent RNA helicase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 450

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 160/375 (42%), Gaps = 63/375 (16%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT-- 307
           ++G+P  +   +AQ+ +     SP   QE+AI D L   + K+ + R   G  GSGKT  
Sbjct: 6   DLGLPRPIVSVLAQQGI----TSPFPIQEAAIPDAL---AGKDILGR---GPTGSGKTFT 55

Query: 308 ----LVALIAMAAAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
               ++A +A + A + G  + +++AP   LA Q  + + +      + V  + G +   
Sbjct: 56  FGLPMIARLAGSGASKPGRPRGLVLAPTRELAIQIQQRLDEPANAMGLRVLSVVGGVNIN 115

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRFGVQQRLKLTQK 417
           +  + L R       I++ T    QD +   KL      L  +DE  +      L   +K
Sbjct: 116 NHIRQLAR----PVDILVATPGRAQDLVNQKKLSLSDATLTALDEADQMADMGFLPQVKK 171

Query: 418 ATAPHVLLMTATPIPRTLVLTSL-GDID--ISKITEKPA--GRKPIKTVIIPINR----I 468
                +L +T     R L   +L GD++  +S+    P      P++  +  +      +
Sbjct: 172 -----LLALTPDNAQRLLFSATLDGDVNKLVSRFMHDPVTHSTAPVQASVDTMKHYVFFV 226

Query: 469 DEVIERLKVVLS----EGKKAYWICPQ--IEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
            E  +R KVVL     EGK   ++  +  ++ + +   R+ +                +H
Sbjct: 227 GEREDRNKVVLRIAAREGKTIMFMRTKHGVDRQAKKLRRAGIPAMG------------LH 274

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN--AEHFGLAQLHQLR 580
           G      + + +  F +G+  +L+AT +   GIDV D S+++  +  AEH   A LH+  
Sbjct: 275 GDKGQNTRSTTLQGFADGSVSVLVATDIAARGIDVHDVSLVVHVDPPAEHK--AYLHRA- 331

Query: 581 GRVGRGEEISSCILL 595
           GR  R  E  S + L
Sbjct: 332 GRTARAGEAGSVVTL 346


>gi|284008949|emb|CBA75822.1| phage DNA primase/helicase [Arsenophonus nasoniae]
          Length = 729

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 17/172 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L G  GSGKT V L  +   +  G QA+++ P   L  Q    I+++++     V+++ 
Sbjct: 218 LLVGITGSGKTEVYLSVIENILAQGKQALVLVPEISLTPQ---TIQRFSERFNAPVDVLH 274

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH----------R 405
             +  + R     R   G + I+IGT  ALF     +  L L+I+DE+H          R
Sbjct: 275 SALNDSERLAVWLRAQKGHSAIVIGTRSALF---TAFANLGLIIIDEEHDNSYKQQDGWR 331

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +  +    L  K     +++ TATP   +L     G      +T++    KP
Sbjct: 332 YHARDLAVLRAKKENIPIIMGTATPSLESLYNIEQGKYHRLDLTQRAGNAKP 383


>gi|283457475|ref|YP_003362053.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133468|dbj|BAI64233.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 732

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 136/325 (41%), Gaps = 47/325 (14%)

Query: 302 VGSGKT----LVALIAMAAAVEAGG-----QAVIMAPIGILAQQHYEFIKKY-TQNTQII 351
            G+GKT    L AL  MA   +  G     Q +++AP   LA Q  E    Y T      
Sbjct: 107 TGTGKTAAFALPALSRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFT 166

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD----------SIQYYKLILVIVD 401
           V  I G  P   +   L R     A +++GT     D          ++QY  L+L   D
Sbjct: 167 VLPIYGGSPYGPQLAGLRR----GAQVVVGTPGRVIDHLEKGSLDLSNLQY--LVLDEAD 220

Query: 402 EQHRFGVQQRLKLTQKAT--APHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRK 456
           E  R G  + ++   + T  +  V L +AT +P   R +    L D    ++  K     
Sbjct: 221 EMLRMGFAEDVEKILEGTPDSKQVALFSAT-MPNSIRKIAQQYLNDPREVRVKAKTTTSS 279

Query: 457 PIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            I    + +   +++D +   L+V   +G     I   +  KKE+    V ++  +    
Sbjct: 280 NISQRYMQVMHSHKLDAMTRVLEVENYDG-----IIVFVRTKKETE--EVADKLKA--RG 330

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F +  A I+G +    +E  +D+ ++G   +L+AT V   G+DV   S+++  +  H   
Sbjct: 331 FAA--AAINGDIPQQLRERTVDALRDGRIDILVATDVAARGLDVERISLVVNYDIPHDTE 388

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
           + +H++ GR GR     + IL   P
Sbjct: 389 SYVHRI-GRTGRAGREGAAILFVTP 412


>gi|241663607|ref|YP_002981967.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240865634|gb|ACS63295.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 493

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 120/296 (40%), Gaps = 37/296 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q Y+ + KY + T +   ++ G +    + + L R       I++ T
Sbjct: 91  RALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRR----GVEILVAT 146

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLV 436
                D +Q   + L     +++DE  R      L   Q+       ++   P  R TL+
Sbjct: 147 PGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQR-------IINLLPAHRQTLL 199

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I K+      R P    +   N   E + ++   + +  K   +   ++++ 
Sbjct: 200 FSATFSPEIKKLAAS-YLRHPQTIEVARSNATAENVRQVIYTVPDNHKQAALVHLLKQRA 258

Query: 497 E----------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E          SN +    R     E    +   IHG  +  ++   +++FK GT  +L+
Sbjct: 259 EQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGTVDVLV 318

Query: 547 ATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT V   G+D+     +I      NAE +    +H++ GR GR       + L+ P
Sbjct: 319 ATDVAARGLDISQMPCVINFDLPFNAEDY----VHRI-GRTGRAGASGDALSLFAP 369


>gi|327183840|gb|AEA32287.1| Primosomal protein N' [Lactobacillus amylovorus GRL 1118]
          Length = 799

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 7/142 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P      Q+ A+ +I + + +K     +L+G  GSGKT V L A++ A+  G  A+++ P
Sbjct: 260 PIKLNDEQQHALDEIAKAIDEKKAETFLLEGITGSGKTEVYLHAISKALAQGRTALMLVP 319

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            I +  Q   +   ++ Q     V ++   + +  +     RI  G+  +++G  +    
Sbjct: 320 EISLTPQMVRQVKARFGQE----VAVLHSALSEGEKYDEWRRIRRGETKVVVGARSAVFA 375

Query: 389 SIQYYKLILVIVDEQHRFGVQQ 410
            ++   + L+++DE+H    +Q
Sbjct: 376 PLK--NIGLIVIDEEHESSYKQ 395


>gi|315038635|ref|YP_004032203.1| Primosomal protein N' [Lactobacillus amylovorus GRL 1112]
 gi|325957116|ref|YP_004292528.1| Primosomal protein N' [Lactobacillus acidophilus 30SC]
 gi|312276768|gb|ADQ59408.1| Primosomal protein N' [Lactobacillus amylovorus GRL 1112]
 gi|325333681|gb|ADZ07589.1| Primosomal protein N' [Lactobacillus acidophilus 30SC]
          Length = 799

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 7/142 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P      Q+ A+ +I + + +K     +L+G  GSGKT V L A++ A+  G  A+++ P
Sbjct: 260 PIKLNDEQQHALDEIAKAIDEKKAETFLLEGITGSGKTEVYLHAISKALAQGRTALMLVP 319

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            I +  Q   +   ++ Q     V ++   + +  +     RI  G+  +++G  +    
Sbjct: 320 EISLTPQMVRQVKARFGQE----VAVLHSALSEGEKYDEWRRIRRGETKVVVGARSAVFA 375

Query: 389 SIQYYKLILVIVDEQHRFGVQQ 410
            ++   + L+++DE+H    +Q
Sbjct: 376 PLK--NIGLIVIDEEHESSYKQ 395


>gi|241737496|ref|XP_002414033.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215507887|gb|EEC17341.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 402

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 144/340 (42%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ +IK ++     K R + I Q   G+GKT    I +   ++      QA+I++P
Sbjct: 52  PSAIQQRSIKPVI-----KGRDV-IAQAQSGTGKTATFSIGVLQTIDTQMRETQALILSP 105

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I        +      G     +  + + ++ +GQ HI+ GT     D 
Sbjct: 106 TRELAGQIQKVILALGDYMNVQCHSCIGG---TNLGEDIRKLDYGQ-HIVSGTPGRVFDM 161

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++    +   P   V+L++AT     L +TS
Sbjct: 162 IKRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPCTQVVLISATLPHEILEMTS 221

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEGKKA 485
               D  +I  K      + IK   + + R +              I +  +  +  +K 
Sbjct: 222 KFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 281

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ +E+NF                +++ +HG M   +++++M  F++G+ ++L
Sbjct: 282 DWLS---EKMREANF----------------TVSSMHGDMPQKERDAIMKEFRSGSSRVL 322

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I T +   GIDV   S++I  +  +     +H++ GR GR
Sbjct: 323 ITTDIWARGIDVQQVSLVINYDLPNNRELYIHRI-GRSGR 361


>gi|261254144|ref|ZP_05946717.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio orientalis CIP 102891]
 gi|260937535|gb|EEX93524.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio orientalis CIP 102891]
          Length = 733

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 7/137 (5%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   +E G QA+++ P IG+  Q    F K++     + VE+I
Sbjct: 221 LLEGVTGSGKTEVYLNLIKPILEKGQQALVLVPEIGLTPQTINRFRKRF----DVPVEVI 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    R  A        + I+IGT +       +  L ++IVDE+H    +Q+  L 
Sbjct: 277 HSGLNDTERLNAWLSARDNASGIVIGTRSALLTP--FANLGIIIVDEEHDASYKQQDSLR 334

Query: 416 QKATAPHVLLMTATPIP 432
             A    V+      IP
Sbjct: 335 YHARDVAVMRANKEQIP 351


>gi|256421111|ref|YP_003121764.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256036019|gb|ACU59563.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 708

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 140/347 (40%), Gaps = 39/347 (11%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGIL 333
           QE+AI  IL   S  N    IL     SGKT  A + + +AV+    G Q + ++P+  L
Sbjct: 27  QEAAITRIL---STDNHY--ILVSATASGKTEAAFLPVLSAVDFKQPGIQVLYISPLVAL 81

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII---GTHALFQDS- 389
               +E  +   +   I V    G   +++R   ++RI      ++I       LF +  
Sbjct: 82  INDQFERAELLCKYLDIPVTRWHG---ESNRSDKMKRIEEAHGILLITPESIEGLFSNRP 138

Query: 390 ----IQYYKLILVIVDEQHRF-GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
               + +  L  +IVDE H F    + L L    +  H L  T  P     +  ++GD +
Sbjct: 139 ERGRVLFSNLQFIIVDEVHSFLNTDRGLHLRSLLSRIHALAKTK-PARMIGLSATIGDYE 197

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------ 498
            +K       R  +     P     E +    V   +G    +I    E+ K S      
Sbjct: 198 AAKQFTGEPDRTKVLVDSTPKQMQAEFV-YWPVSAYKGFSDAFINDLYEDTKNSKVLLFP 256

Query: 499 NFRSVVERFNS-------LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK--LLIATT 549
           N R  VE   S        H+  T+  +  H  ++   +    +  KN T +   +I T+
Sbjct: 257 NSRKNVEELASKLRGKAEQHQGHTAWFSH-HASLTKEQRHYAEEFAKNSTRQPYCIICTS 315

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            +E+GID+    +++  +A    +A L Q  GR GR E   S +L+Y
Sbjct: 316 TLELGIDIGSVDLVVQVDASP-SVASLIQRTGRSGRQEGAMSRLLMY 361


>gi|126654509|ref|XP_001388425.1| ATP-dependent RNA helicase [Cryptosporidium parvum Iowa II]
 gi|126117365|gb|EAZ51465.1| ATP-dependent RNA helicase, putative [Cryptosporidium parvum Iowa
           II]
          Length = 406

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 500 FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F + V R   L +  T   SS   IH RM    +  V   F+NG C+ L+++ +I  GID
Sbjct: 276 FCNSVTRVELLAKKITELGSSCFYIHARMLQSHRNRVFHDFRNGACRCLVSSDLITRGID 335

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +   +++I  +   +    LH++ GR GR
Sbjct: 336 IQSVNVVINFDFPKYSETYLHRI-GRSGR 363


>gi|110597425|ref|ZP_01385712.1| primosomal protein N' [Chlorobium ferrooxidans DSM 13031]
 gi|110340969|gb|EAT59440.1| primosomal protein N' [Chlorobium ferrooxidans DSM 13031]
          Length = 810

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 7/140 (5%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-I 330
           +PT +Q+ A++ +   ++ K     +L G  GSGKTLV +  + + + AG  A+++ P I
Sbjct: 273 NPTAAQKHALEALQSALNNKRYATFLLHGVTGSGKTLVYIEFLKSVLAAGKTAIVLVPEI 332

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +  Q    F + +  +    + I+   M    +  A   +  G+  I +G  +     +
Sbjct: 333 SLTPQTAGRFRQHFHDD----ITILHSGMSNQEKYDAWHSLRQGKTKIALGARSTIFAPL 388

Query: 391 QYYKLILVIVDEQHRFGVQQ 410
           +   L  +IVDE+H    +Q
Sbjct: 389 K--NLGAIIVDEEHDGAYKQ 406


>gi|330508988|ref|YP_004385416.1| DEAD/DEAH box helicase domain-containing protein [Methanosaeta
           concilii GP-6]
 gi|328929796|gb|AEB69598.1| DEAD/DEAH box helicase domain protein [Methanosaeta concilii GP-6]
          Length = 762

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 11/136 (8%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G GKT++AL+ + A ++ G + + +AP   L +QH  F+++  ++ +  V ++TG M  
Sbjct: 39  TGLGKTVIALMVLLARLDKG-RVLFLAPTKPLVEQHAAFLRRVLKD-EGEVTMMTGEMMP 96

Query: 362 AHRRKALE--RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR-FG----VQQRLKL 414
             R+ A E  RI      +I   + L    I    + L+I DE HR  G    V    + 
Sbjct: 97  EKRKAAWEAARITVSTPQVI--ENDLLSRRIDLEDISLIIFDEAHRAVGNYAYVYIAERY 154

Query: 415 TQKATAPHVLLMTATP 430
            ++ T P VL +TA+P
Sbjct: 155 AREGTNPLVLGITASP 170


>gi|322787030|gb|EFZ13254.1| hypothetical protein SINV_10425 [Solenopsis invicta]
          Length = 775

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 20/150 (13%)

Query: 302 VGSGKTLVALIAM-----AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            GSGKT   LI +     A   +AG +A+I++P   LA Q  +FIK+  + T     +I 
Sbjct: 82  TGSGKTACFLIPLFEKLKARQAKAGARALILSPTRELALQTLKFIKELGRFTGFKASVIL 141

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHR-----F 406
           G      +  A+    HG   II+ T     H   +  +Q   +  V+ DE  R     F
Sbjct: 142 GGDSMDDQFNAI----HGNPDIIVATPGRFLHICVEMDLQLKNVEYVVFDEADRLFEMGF 197

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           G Q +  + +   +   LL +AT +P+ LV
Sbjct: 198 GEQIQEIVNRLPESRQTLLFSAT-LPKILV 226


>gi|313890018|ref|ZP_07823654.1| primosomal protein N' [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121609|gb|EFR44712.1| primosomal protein N' [Streptococcus pseudoporcinus SPIN 20026]
          Length = 794

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 10/164 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q  A+ +I   + Q+N+   +L+G  GSGKT V L  +   ++ G  A+++ P I +  Q
Sbjct: 262 QARAVSEISAAIGQENKPF-LLEGITGSGKTEVYLHLIDHVLKLGKTAIVLVPEISLTPQ 320

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
               FI ++ +    +V I+   +    +    ++I +GQA +++G  +     ++   +
Sbjct: 321 MTSRFISRFGK----LVAIMHSGLSDGEKFDEWQKIKNGQAKVVVGARSAIFAPLE--NI 374

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
             +I+DE+H    +Q  +   +  A  V L+ A      LVL S
Sbjct: 375 GAIIIDEEHESSYKQ--ESNPRYHARDVALLRAQKHQAVLVLGS 416


>gi|195356214|ref|XP_002044575.1| GM20179 [Drosophila sechellia]
 gi|194132206|gb|EDW53828.1| GM20179 [Drosophila sechellia]
          Length = 1214

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 163/367 (44%), Gaps = 50/367 (13%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AA 316
           ++LR + F  PT  Q  AI  I   MS ++ ++ I +   GSGKTL  ++ M        
Sbjct: 514 EVLRRLGFEKPTPIQCQAIPAI---MSGRD-LIGIAK--TGSGKTLAFILPMFRHILDQP 567

Query: 317 AVEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++E G  A+  IMAP   L  Q  + I+K++++  +    + G    + +   L+R    
Sbjct: 568 SMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR---- 623

Query: 375 QAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF---GVQ-QRLKLTQKATAPH 422
            A II+ T     D +           ++  V++DE  R    G + Q +++        
Sbjct: 624 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDR 683

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
             +M +   PR +   +   +           +KPI+ ++   + + + +E+  V+L++ 
Sbjct: 684 QTVMFSATFPRQMEALARRIL-----------KKPIEVIVGGRSVVCKDVEQNVVILNDD 732

Query: 483 KKAYWICP--QIEEKKESNFRSVVERFNS---LHEHFTSSIAI--IHGRMSDIDKESVMD 535
            K + +     I ++  S    V ++ N+   L +   +S     +HG +   D++S + 
Sbjct: 733 AKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTII 792

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR  +  S    
Sbjct: 793 DFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRC-GRTGRAGKKGSAYTF 851

Query: 596 YHPPLSK 602
             P  S+
Sbjct: 852 ITPEQSR 858


>gi|115373430|ref|ZP_01460728.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|310822521|ref|YP_003954879.1| ATP-independent RNA helicase dbpa [Stigmatella aurantiaca DW4/3-1]
 gi|115369596|gb|EAU68533.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309395593|gb|ADO73052.1| ATP-independent RNA helicase DbpA [Stigmatella aurantiaca DW4/3-1]
          Length = 459

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 119/282 (42%), Gaps = 31/282 (10%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   GSGKT    + +   V+      QA+++ P   L  Q    I++  +    + V +
Sbjct: 44  QAQTGSGKTAAFALPLLEKVQPARRRLQALVLCPTRELCAQVAGEIRRLGRRLPGLQVLV 103

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF--- 406
           ++G  P    R  L+ +  G AHI +GT       L ++++   +L  V++DE  R    
Sbjct: 104 LSGGQPI---RPQLDALGKG-AHIAVGTPGRVLDLLDREALDTGQLATVVLDEADRMLDM 159

Query: 407 GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           G ++ ++    A  P    +L +AT  P    ++     + +++T   AG  P    +  
Sbjct: 160 GFREDMERILGAVPPSRQTVLFSATFPPTIEAMSRAFQKEPARVTVAEAGVAPDIQQLCF 219

Query: 465 INRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
                E  + L  +L   + A  I  C         N ++ V     +      S   + 
Sbjct: 220 TCGPHEKTQLLLRILRHYQPASAIVFC---------NLKATVTELTQMLVDAGVSADGLQ 270

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV--VDASI 562
           G +   D++ VM  F+N + ++L+AT V   GIDV  +DA I
Sbjct: 271 GDLEQSDRDRVMAKFRNHSTRVLVATDVAGRGIDVEALDAVI 312


>gi|112983736|ref|NP_001037376.1| eukaryotic translation initiation factor 4A [Bombyx mori]
 gi|73695588|gb|AAZ80489.1| translation initiation factor 4A [Bombyx mori]
          Length = 420

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 52/296 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +     +      
Sbjct: 88  IAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 147

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRFGV 408
              G     + R+ + ++  G  H+++GT     D I    L      L ++DE      
Sbjct: 148 ACIGG---TNVREDIRQLESG-VHVVVGTPGRVYDMITRRALHANTIKLFVLDE-----A 198

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            + L    K     V  M +  +   L+  ++ D D+ +++ +   R P++ ++      
Sbjct: 199 DEMLSRGFKDQIHDVFKMLSADVQVILLSATMPD-DVLEVS-RCFMRDPVRILV------ 250

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKE------------------SNFRSVVERFN-S 509
               ++ ++ L EG K ++I  ++EE K                    N R  V+    S
Sbjct: 251 ----QKEELTL-EGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTES 305

Query: 510 LH-EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +H   FT  ++ +HG M   ++E +M  F+ G+ ++LI T ++  GIDV   S +I
Sbjct: 306 MHLRDFT--VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 359


>gi|315653890|ref|ZP_07906806.1| competence protein FA [Lactobacillus iners ATCC 55195]
 gi|315488586|gb|EFU78232.1| competence protein FA [Lactobacillus iners ATCC 55195]
          Length = 432

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 140/346 (40%), Gaps = 53/346 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q     D+L  +  +N    ++    G+GKT +   A+   ++ G    +  P   +
Sbjct: 94  TDRQAKVSADLLHAL--QNNQDHLVHAVTGAGKTEMLFKAVEYFLQQGKYVALATPRLDV 151

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             + Y  + +   NT+I          + H + A +     +  II  TH L    ++YY
Sbjct: 152 VNELYPRMCQAFANTKI---------GKYHGKMAQD--PDNEPFIICTTHQL----LKYY 196

Query: 394 KLI-LVIVDEQHRFGVQQRLKL---TQKATAP--HVLLMTATPIPRTLVLTSLGDIDISK 447
           +   L+I+DE   F       L    + A  P      +TATP    L     G++  S 
Sbjct: 197 QAFDLIIIDEVDAFPYVNNPMLYYGAKNAIKPTGQTFYLTATPSKDMLTKVKNGEMGYSL 256

Query: 448 ITEKPAG------------RKPIK-TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + ++  G            RK I    + P      +I+ L  +++ GK      P+I E
Sbjct: 257 LQQRFHGGLLAVPEEYLFWRKYISGESLHPF-----LIKVLNEIINSGKPLLVFVPRIAE 311

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                    +  + ++ +   S + I     SD +++  ++ F+N    +L+ TT++E G
Sbjct: 312 ---------LGLYQTILQKKYSQLVIASVHSSDKNRQQKVEQFRNREISILLTTTILERG 362

Query: 555 IDVVDASIIIIENAEH-FGLAQLHQLRGRVGRG--EEISSCILLYH 597
           +      +I+I   +  +  A L Q+ GRVGR   +++   I  YH
Sbjct: 363 VTFPGVQVIVIAADDAIYTTAGLVQIAGRVGRAATDQVGRVIFCYH 408


>gi|313202537|ref|YP_004041194.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312441853|gb|ADQ78209.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 408

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 125/317 (39%), Gaps = 47/317 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG------QAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           I     G+GKT   ++ +   ++A         A+IMAP   LAQQ  + ++ ++  T  
Sbjct: 42  IACAQTGTGKTAAFILPLLHNLQAEPLAADKVNAIIMAPTRELAQQIDQQMEGFSYFTSF 101

Query: 351 I-VEIITGNMPQAH--RRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
             V +  GN   A   +R+ L+      A ++I T       I  Y +        I+DE
Sbjct: 102 SSVAVYGGNDASAWDTQRRGLQ----NGADVVIATPGRLLSHINLYDIDFSHVKYFILDE 157

Query: 403 QHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
             R         + Q +    K     +   T  P  R L  T L +             
Sbjct: 158 ADRMLDMGFFDDIMQVVNRLPKDRQTIMFSATMPPKIRLLAKTILNN------------- 204

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHE 512
            P++ V I ++R  E I +   +  E +K   I     E++ +    F     +   L +
Sbjct: 205 -PVE-VKIAVSRPPESIMQTAYICYEAQKHGIIRHLFAEQEATKVIIFSGSKLKVKELFK 262

Query: 513 HFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            F     S+  +H  +    ++ VM  FKN    +L+AT ++  GID+ D S++I  +  
Sbjct: 263 TFRQMGLSVGEMHSDLDQAQRDHVMHEFKNNRVSILVATDIVSRGIDIDDISLVINYDVP 322

Query: 570 HFGLAQLHQLRGRVGRG 586
           H     +H++ GR  R 
Sbjct: 323 HDAEDYVHRI-GRTARA 338


>gi|296533085|ref|ZP_06895723.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
 gi|296266590|gb|EFH12577.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
          Length = 389

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 143/346 (41%), Gaps = 45/346 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM--------AAAVEAGGQ 323
           +PT  Q  AI  +L        +L I Q   G+GKT    + +        A A   G +
Sbjct: 24  TPTPIQAQAIPHVLAGRD----LLGIAQ--TGTGKTAAFALPVLHHLADRKAPAPRGGCR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I++P   LA Q ++ I+ Y +   +   +I G +    + +AL R       +++ T 
Sbjct: 78  ALILSPTRELASQIHDNIRAYGRFLGLSSAVIFGGVGARPQVEALRR----GVDVLVATP 133

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTA--TPIPRTLV 436
              QD +Q     L     +++DE          ++  +   P V  +++  +   +TL 
Sbjct: 134 GRLQDHVQTGAAKLQGVEVLVLDEAD--------QMLDRGFWPAVKRLSSVMSKNRQTLF 185

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK- 495
            ++    +I+KI  +   + P K  + P+    E IE+  + +   +K   +   + +  
Sbjct: 186 FSATMPAEIAKIAAEML-KDPAKVSVTPVATTAERIEQKLIHIDASQKRVLLSEMLRQPG 244

Query: 496 --KESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             +   F       + + +H  +   +   IHG  S   +E  +  F+ G   +L+AT +
Sbjct: 245 IGRALVFARTKHGADRVTKHLNADGIAAHAIHGDRSQGQRERALAEFRTGRAPILVATDI 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
              GIDV   + +   +      A +H++ GR  R    GE I+ C
Sbjct: 305 ASRGIDVDGVTHVFQFDLPDTPEAYVHRI-GRTARAGASGEAIAFC 349


>gi|260664026|ref|ZP_05864879.1| primosomal protein N [Lactobacillus jensenii SJ-7A-US]
 gi|260561912|gb|EEX27881.1| primosomal protein N [Lactobacillus jensenii SJ-7A-US]
          Length = 797

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 68/138 (49%), Gaps = 7/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
            + Q +A++ I + + +      +L+G  GSGKT V L A++ A++ G  A+++ P I +
Sbjct: 262 NQQQTAALQQINESIERSESKTYLLEGITGSGKTEVYLHAISNALQRGKNALMLVPEISL 321

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
             Q   +   ++ +     V ++   + +  +     RI  G+A +++G  +     +  
Sbjct: 322 TPQMVSQVNARFGKE----VAVLHSGLSEGEKYDEWRRIRRGEARVVVGARSAIFAPLS- 376

Query: 393 YKLILVIVDEQHRFGVQQ 410
             + L+I+DE+H    +Q
Sbjct: 377 -NIGLIIIDEEHEASYKQ 393


>gi|251787768|ref|YP_003002489.1| primosome assembly protein PriA [Dickeya zeae Ech1591]
 gi|247536389|gb|ACT05010.1| primosomal protein N' [Dickeya zeae Ech1591]
          Length = 732

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++       VE +
Sbjct: 221 LLAGITGSGKTEVYLSVLENILAQGKQALVLVPEIGLTPQT----IARFRDRFNAPVEAL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   G+A I+IGT  ALF     + +L L+++DE+H    +Q+
Sbjct: 277 HSGLNDSERLSVWLRARQGEAAIVIGTRSALF---TPFARLGLIVIDEEHDGSYKQQ 330


>gi|225579817|gb|ACN94094.1| unknown [Drosophila melanogaster]
          Length = 1227

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 159/367 (43%), Gaps = 50/367 (13%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AA 316
           ++LR + F  PT  Q  AI  I   MS ++ ++ I +   GSGKTL  ++ M        
Sbjct: 526 EVLRRLGFEKPTPIQCQAIPAI---MSGRD-LIGIAK--TGSGKTLAFILPMFRHILDQP 579

Query: 317 AVEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++E G  A+  IMAP   L  Q  + I+K++++  +    + G    + +   L+R    
Sbjct: 580 SMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR---- 635

Query: 375 QAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF---GVQ-QRLKLTQKATAPH 422
            A II+ T     D +           ++  V++DE  R    G + Q +++        
Sbjct: 636 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDR 695

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
             +M +   PR +   +   +           +KPI+ ++   + + + +E+  V+L++ 
Sbjct: 696 QTVMFSATFPRQMEALARRIL-----------KKPIEVIVGGRSVVCKEVEQHVVILNDD 744

Query: 483 KKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
            K + +   +   +E+     F    E  + L      +      +HG +   D++S + 
Sbjct: 745 AKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTII 804

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR  +  S    
Sbjct: 805 DFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRC-GRTGRAGKKGSAYTF 863

Query: 596 YHPPLSK 602
             P  S+
Sbjct: 864 ITPEQSR 870


>gi|225579772|gb|ACN94054.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 159/367 (43%), Gaps = 50/367 (13%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AA 316
           ++LR + F  PT  Q  AI  I   MS ++ ++ I +   GSGKTL  ++ M        
Sbjct: 523 EVLRRLGFEKPTPIQCQAIPAI---MSGRD-LIGIAK--TGSGKTLAFILPMFRHILDQP 576

Query: 317 AVEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++E G  A+  IMAP   L  Q  + I+K++++  +    + G    + +   L+R    
Sbjct: 577 SMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR---- 632

Query: 375 QAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF---GVQ-QRLKLTQKATAPH 422
            A II+ T     D +           ++  V++DE  R    G + Q +++        
Sbjct: 633 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDR 692

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
             +M +   PR +   +   +           +KPI+ ++   + + + +E+  V+L++ 
Sbjct: 693 QTVMFSATFPRQMEALARRIL-----------KKPIEVIVGGRSVVCKEVEQHVVILNDD 741

Query: 483 KKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
            K + +   +   +E+     F    E  + L      +      +HG +   D++S + 
Sbjct: 742 AKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTII 801

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR  +  S    
Sbjct: 802 DFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRC-GRTGRAGKKGSAYTF 860

Query: 596 YHPPLSK 602
             P  S+
Sbjct: 861 ITPEQSR 867


>gi|225579763|gb|ACN94046.1| unknown [Drosophila melanogaster]
 gi|225579781|gb|ACN94062.1| unknown [Drosophila melanogaster]
 gi|225579826|gb|ACN94102.1| unknown [Drosophila melanogaster]
 gi|225579835|gb|ACN94110.1| unknown [Drosophila melanogaster]
 gi|225579853|gb|ACN94126.1| unknown [Drosophila melanogaster]
 gi|225579862|gb|ACN94134.1| unknown [Drosophila melanogaster]
 gi|225579889|gb|ACN94158.1| unknown [Drosophila melanogaster]
 gi|225579898|gb|ACN94166.1| unknown [Drosophila melanogaster]
 gi|225579916|gb|ACN94182.1| unknown [Drosophila melanogaster]
 gi|225579934|gb|ACN94198.1| unknown [Drosophila melanogaster]
 gi|225579952|gb|ACN94214.1| unknown [Drosophila melanogaster]
 gi|225579961|gb|ACN94222.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 159/367 (43%), Gaps = 50/367 (13%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AA 316
           ++LR + F  PT  Q  AI  I   MS ++ ++ I +   GSGKTL  ++ M        
Sbjct: 523 EVLRRLGFEKPTPIQCQAIPAI---MSGRD-LIGIAK--TGSGKTLAFILPMFRHILDQP 576

Query: 317 AVEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++E G  A+  IMAP   L  Q  + I+K++++  +    + G    + +   L+R    
Sbjct: 577 SMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR---- 632

Query: 375 QAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF---GVQ-QRLKLTQKATAPH 422
            A II+ T     D +           ++  V++DE  R    G + Q +++        
Sbjct: 633 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDR 692

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
             +M +   PR +   +   +           +KPI+ ++   + + + +E+  V+L++ 
Sbjct: 693 QTVMFSATFPRQMEALARRIL-----------KKPIEVIVGGRSVVCKEVEQHVVILNDD 741

Query: 483 KKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
            K + +   +   +E+     F    E  + L      +      +HG +   D++S + 
Sbjct: 742 AKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTII 801

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR  +  S    
Sbjct: 802 DFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRC-GRTGRAGKKGSAYTF 860

Query: 596 YHPPLSK 602
             P  S+
Sbjct: 861 ITPEQSR 867


>gi|259906823|ref|YP_002647179.1| primosome assembly protein PriA [Erwinia pyrifoliae Ep1/96]
 gi|224962445|emb|CAX53900.1| Primosomal protein n\' [Erwinia pyrifoliae Ep1/96]
          Length = 732

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   + +G QA+++ P IG+  Q     I +++Q     V+++
Sbjct: 221 LLAGITGSGKTEVYLSVLENVLASGHQALVLVPEIGLTPQT----IARFSQRFNAPVDVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   G+  I+IGT  ALF     + +L  +++DE+H    +Q+
Sbjct: 277 HSALNDSERLAVWLRARSGETAIVIGTRSALF---TPFARLGAIVIDEEHDSSYKQQ 330


>gi|198435916|ref|XP_002130991.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Ciona intestinalis]
          Length = 1150

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 135/316 (42%), Gaps = 51/316 (16%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+  L+ M   +          G  AVIM P   LA Q  +  KK+T++ ++ V 
Sbjct: 536 TGSGKTVAFLLPMLRQIMDQRPLEDTEGPIAVIMTPTRELALQITKECKKFTKSLKLHVV 595

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G    + +   L+R     A II+ T     D +           +   +++DE  R
Sbjct: 596 CVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLTVNNGRVTNLRRCTYLVLDEADR 651

Query: 406 F---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR---KP 457
               G + ++     +  P    +L +AT  PR +              E  A R   KP
Sbjct: 652 MFDMGFEPQVMHVINSCRPDRQTVLFSAT-FPRQM--------------EALARRILNKP 696

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEH 513
           ++  +   + +   +++  ++L+E +K   +   + + +E      F    ER + L + 
Sbjct: 697 VEVQVGGRSVVCSDVKQQVLILTEEQKFLKLLELLGQYQEKGAVLVFVDKQERADYLLKE 756

Query: 514 F---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
               + S   +HG +   D++S++  FK G  +LLIAT+V   G+DV +  +++  N  +
Sbjct: 757 LMDKSYSCMALHGGIDQYDRDSIISDFKRGVNQLLIATSVAARGLDVKNLILVVNFNCPN 816

Query: 571 FGLAQLHQLRGRVGRG 586
                +H+  GR GR 
Sbjct: 817 HYEDYVHRC-GRTGRA 831


>gi|134297916|ref|YP_001111412.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134050616|gb|ABO48587.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 460

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 132/329 (40%), Gaps = 52/329 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKTL  ++ +   ++A     QA+I+ P   LA Q    +KK        V 
Sbjct: 43  IAQAQTGTGKTLAFVLPILEKIDAKKSYIQALILTPTRELALQITTEVKKLASKMDANVL 102

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQ----H 404
            + G      + K L+    G  HI+I T     D     +I+   + ++++DE     H
Sbjct: 103 AVYGGQDVERQNKRLQ----GNTHIVIATPGRLLDHLGRGTIRLTGVSMLVLDEADQMLH 158

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP-------AGRKP 457
              + +  K+  + +A    ++ +  +P  +   S+      K   KP        G   
Sbjct: 159 MGFLNEVEKIIHQTSAKRQTMLFSATMPAEIRALSV------KYMRKPMDIHVRGTGITL 212

Query: 458 IKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            KT  I +   D    E L+ +L E +    I           F     R ++L+E   +
Sbjct: 213 EKTKQIAVETTDRTKQETLRKLLDEYQPYLGII----------FCRTKRRASALNEMLLA 262

Query: 517 ---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAE 569
              +   +HG +S   +E VM  F+    ++L+AT V   G+DV   + +    I ++ E
Sbjct: 263 HGYNSDELHGDLSQAKREQVMKRFREAKLQILVATDVAARGLDVEGVTHVFNYDIPQDVE 322

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +    +H++ GR GR  +    +    P
Sbjct: 323 SY----IHRI-GRTGRAGDTGLAVTFVSP 346


>gi|324329406|gb|ADY24666.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 481

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 134/323 (41%), Gaps = 40/323 (12%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTAT------PIPRTLVLTSLGDIDISKITEKPAGRKP 457
             F  Q    + +  T    +L +AT       + RT  + S   I+I     K AG   
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSATLPEDVEKLSRTY-MNSPTHIEI-----KAAGVTT 214

Query: 458 IKTVIIPINRI-DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            K   +    I DE +  LK V + E   +  I  + ++  +  +R + +R N   +   
Sbjct: 215 DKIEHVLFEVIEDEKLSLLKDVTTIENPDSCIIFCRTQDNVDHVYRQL-KRANYPCDK-- 271

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
                IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      + 
Sbjct: 272 -----IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESY 326

Query: 576 LHQLRGRVGRGEEISSCILLYHP 598
           +H+  GR GR       I    P
Sbjct: 327 VHRT-GRTGRAGNSGKAITFITP 348


>gi|260773840|ref|ZP_05882755.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260610801|gb|EEX36005.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 420

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 58/294 (19%), Positives = 120/294 (40%), Gaps = 37/294 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LAQQ ++ +  Y + +++ V +  G    + +++ L     G A ++I T
Sbjct: 83  RALVLVPTRELAQQVFDSLTAYAKGSELKVVVAYGGTSMSVQKQHL----RGGADVLIAT 138

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATP 430
                D      L L     +++DE  R         +Q+ L+   +A            
Sbjct: 139 PGRLLDHAHVKSLYLGNVQTLVLDEADRMLDMGFMPDIQRVLRKLNRAR----------- 187

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +TL  ++  D  I  +  +    +PI+  + P N   + + ++   + + +K+  +  
Sbjct: 188 --QTLFFSATFDQKIKALAYRMM-HEPIEVQVTPANTTADTVSQMVYPVDKKRKSELLAY 244

Query: 491 QIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            I  +       F    +  ++L +         A I+G  S   ++  +D FK G  + 
Sbjct: 245 LIGSRNWQQVLVFTKTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKAGKIRA 304

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           LIAT V   GID+     ++  +  +     +H++ GR GR  +    + L  P
Sbjct: 305 LIATDVAARGIDICQLEQVVNFDLPYKAEDYIHRI-GRTGRAGQSGLAVSLMSP 357


>gi|259501050|ref|ZP_05743952.1| competence protein F [Lactobacillus iners DSM 13335]
 gi|259167744|gb|EEW52239.1| competence protein F [Lactobacillus iners DSM 13335]
          Length = 428

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 140/346 (40%), Gaps = 53/346 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q     D+L  +  +N    ++    G+GKT +   A+   ++ G    +  P   +
Sbjct: 90  TDRQAKVSADLLHAL--QNNQDHLVHAVTGAGKTEMLFKAVEYFLQQGKYVALATPRLDV 147

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             + Y  + +   NT+I          + H + A +     +  II  TH L    ++YY
Sbjct: 148 VNELYPRMCQAFANTKI---------GKYHGKMAQD--PDNEPFIICTTHQL----LKYY 192

Query: 394 KLI-LVIVDEQHRFGVQQRLKL---TQKATAP--HVLLMTATPIPRTLVLTSLGDIDISK 447
           +   L+I+DE   F       L    + A  P      +TATP    L     G++  S 
Sbjct: 193 QAFDLIIIDEVDAFPYVNNPMLYYGAKNAIKPTGQTFYLTATPSKDMLTKVKNGEMGYSL 252

Query: 448 ITEKPAG------------RKPIK-TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + ++  G            RK I    + P      +I+ L  +++ GK      P+I E
Sbjct: 253 LQQRFHGGLLAVPEEYLFWRKYISGESLHPF-----LIKVLNEIINSGKPLLVFVPRIAE 307

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                    +  + ++ +   S + I     SD +++  ++ F+N    +L+ TT++E G
Sbjct: 308 ---------LGLYQTILQKKYSQLVIASVHSSDKNRQQKVEQFRNREISILLTTTILERG 358

Query: 555 IDVVDASIIIIENAEH-FGLAQLHQLRGRVGRG--EEISSCILLYH 597
           +      +I+I   +  +  A L Q+ GRVGR   +++   I  YH
Sbjct: 359 VTFPGVQVIVIAADDAIYTTAGLVQIAGRVGRAATDQVGRVIFCYH 404


>gi|323350303|ref|ZP_08085968.1| primosome assembly protein PriA [Streptococcus sanguinis VMC66]
 gi|322123488|gb|EFX95159.1| primosome assembly protein PriA [Streptococcus sanguinis VMC66]
          Length = 795

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 19/187 (10%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I Q + Q +    +L+G  GSGKT V L  +A A+  G  A+++ P I +  Q
Sbjct: 262 QAAAVAAITQKIGQSHSQPVLLEGVTGSGKTEVYLQVIAEALAQGKTAIMLVPEISLTPQ 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               FI ++       V I+   +    +     ++  G A +++G   A+F        
Sbjct: 322 VTDRFISRFGDQ----VAILHSGLSDGEKYDEWRKVERGAAQVVVGARSAIF---APLTN 374

Query: 395 LILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +  +I+DE+H          R+  ++   L  +     ++L +ATP   +    S G  D
Sbjct: 375 IGAIIIDEEHESSYKQDSNPRYHAREVALLRAQYNQAVLVLGSATPSLESRARASRGVYD 434

Query: 445 ISKITEK 451
              ++++
Sbjct: 435 FQLLSKR 441


>gi|315604272|ref|ZP_07879338.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313978|gb|EFU62029.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 699

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 149/358 (41%), Gaps = 58/358 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKTL---VALIAMAAAVEAGGQAVIM 327
           PT  Q +AI  +L+        LR + G    G+GKT    + L+A+  A E   QA+++
Sbjct: 60  PTPIQAAAIPPLLE--------LRDVVGIAQTGTGKTAAFGLPLLAIVDADERDVQALVL 111

Query: 328 APIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           AP   LA Q  + I+ +  +  ++ V  + G  P   +  AL+R     A +++GT    
Sbjct: 112 APTRELAMQSAQAIEDFAARAARLDVVPVYGGSPYGPQIGALKR----GAQVVVGTPGRV 167

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            D I+   L        +L   DE  R G  + ++           + +A P  R   LT
Sbjct: 168 IDLIEKGALDLSNVRMLVLDEADEMLRMGFAEDVET----------IASAVPAQR---LT 214

Query: 439 SLGDIDISKITEKPAG---RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           +L    +    EK A    + P+K  +   +   + I +   V+    K   +C  +  +
Sbjct: 215 ALFSATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVVPYKHKIGALCRVLATR 274

Query: 496 --------KESNFRSVVERFNSLHEHFTSSI-------AIIHGRMSDIDKESVMDSFKNG 540
                   +E++   V  R  +  E  +  +       A I G ++  ++E +++  K G
Sbjct: 275 AQHIARGQEEADAAIVFVRTRADVEEVSLELSARGFRAAGISGDVAQTERERMVERLKTG 334

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              +L+AT V   G+DV   S+++  +      A +H++ GR GR       +  + P
Sbjct: 335 ALDVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRI-GRTGRAGRQGRALTFFTP 391


>gi|313633234|gb|EFS00103.1| probable ATP-dependent RNA helicase YqfR [Listeria seeligeri FSL
           N1-067]
 gi|313637832|gb|EFS03169.1| probable ATP-dependent RNA helicase YqfR [Listeria seeligeri FSL
           S4-171]
          Length = 435

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 150/346 (43%), Gaps = 38/346 (10%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAVEAGGQAVIM 327
           + PT+ Q+  I  IL+  S       I Q   G+GKT   ++ +I      +   QAVI 
Sbjct: 26  YEPTEVQQKLIPGILKGESI------IGQSQTGTGKTHTFILPIINNVNPEKDAVQAVIT 79

Query: 328 APIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           AP   LA Q Y  I+K T+ ++  I V+++ G      +++A++++   Q  II+GT   
Sbjct: 80  APSRELATQIYNEIRKVTKYSEKEIAVQLVIGG---TDKQRAIDKLKK-QPQIIVGTPGR 135

Query: 386 FQDSIQYYKLIL-----VIVDEQH---RFGVQQRLK-LTQKATAPHVLLMTATPIPRTL- 435
             D I+   L +     +++DE       G    +  +  K  A   +L+ +  IP+ L 
Sbjct: 136 INDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSATIPQKLK 195

Query: 436 --VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
             +   + +     I  K A  K ++  I+     D+ ++ LK VL  G + Y       
Sbjct: 196 PFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRDK-LDLLKNVLV-GSQPYLAIVFTN 253

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            K  ++     E  N L E     +A IHG ++  +++  M   +N   + ++AT +   
Sbjct: 254 TKTTAD-----EVANGLTERGLK-VAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
           GID+   S ++  N E       +  R GR GR       + L+ P
Sbjct: 308 GIDIQGISHVV--NYELPDDLDFYIHRTGRTGRAGHSGIALTLFEP 351


>gi|312375424|gb|EFR22803.1| hypothetical protein AND_14200 [Anopheles darlingi]
          Length = 971

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG  S  +++ V+  F++G   +L+AT V   G+DV D   +I  +  +     +H++ 
Sbjct: 547 IHGDKSQSERDYVLQDFRHGKSTILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRI- 605

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           GR GR  +  +    + P   + +   LSVL+
Sbjct: 606 GRTGRCSQYGTAYSFFTPNNGRQARELLSVLE 637


>gi|302190501|ref|ZP_07266755.1| superfamily II DNA/RNA helicase [Lactobacillus iners AB-1]
          Length = 429

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 140/346 (40%), Gaps = 53/346 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q     D+L  +  +N    ++    G+GKT +   A+   ++ G    +  P   +
Sbjct: 91  TDRQAKVSADLLHAL--QNNQDHLVHAVTGAGKTEMLFKAVEYFLQQGKYVALATPRLDV 148

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             + Y  + +   NT+I          + H + A +     +  II  TH L    ++YY
Sbjct: 149 VNELYPRMCQAFANTKI---------GKYHGKMAQD--PDNEPFIICTTHQL----LKYY 193

Query: 394 KLI-LVIVDEQHRFGVQQRLKL---TQKATAP--HVLLMTATPIPRTLVLTSLGDIDISK 447
           +   L+I+DE   F       L    + A  P      +TATP    L     G++  S 
Sbjct: 194 QAFDLIIIDEVDAFPYVNNPMLYYGAKNAIKPTGQTFYLTATPSKDMLTKVKNGEMGYSL 253

Query: 448 ITEKPAG------------RKPIK-TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + ++  G            RK I    + P      +I+ L  +++ GK      P+I E
Sbjct: 254 LQQRFHGGLLAVPEEYLFWRKYISGESLHPF-----LIKVLNEIINSGKPLLVFVPRIAE 308

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                    +  + ++ +   S + I     SD +++  ++ F+N    +L+ TT++E G
Sbjct: 309 ---------LGLYQTILQKKYSQLVIASVHSSDKNRQQKVEQFRNREISILLTTTILERG 359

Query: 555 IDVVDASIIIIENAEH-FGLAQLHQLRGRVGRG--EEISSCILLYH 597
           +      +I+I   +  +  A L Q+ GRVGR   +++   I  YH
Sbjct: 360 VTFPGVQVIVIAADDAIYTTAGLVQIAGRVGRAATDQVGRVIFCYH 405


>gi|225579790|gb|ACN94070.1| unknown [Drosophila melanogaster]
          Length = 1198

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 159/367 (43%), Gaps = 50/367 (13%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AA 316
           ++LR + F  PT  Q  AI  I   MS ++ ++ I +   GSGKTL  ++ M        
Sbjct: 523 EVLRRLGFEKPTPIQCQAIPAI---MSGRD-LIGIAK--TGSGKTLAFILPMFRHILDQP 576

Query: 317 AVEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++E G  A+  IMAP   L  Q  + I+K++++  +    + G    + +   L+R    
Sbjct: 577 SMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR---- 632

Query: 375 QAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF---GVQ-QRLKLTQKATAPH 422
            A II+ T     D +           ++  V++DE  R    G + Q +++        
Sbjct: 633 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDR 692

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
             +M +   PR +   +   +           +KPI+ ++   + + + +E+  V+L++ 
Sbjct: 693 QTVMFSATFPRQMEALARRIL-----------KKPIEVIVGGRSVVCKEVEQHVVILNDD 741

Query: 483 KKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
            K + +   +   +E+     F    E  + L      +      +HG +   D++S + 
Sbjct: 742 AKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTII 801

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR  +  S    
Sbjct: 802 DFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRC-GRTGRAGKKGSAYTF 860

Query: 596 YHPPLSK 602
             P  S+
Sbjct: 861 ITPEQSR 867


>gi|207367146|dbj|BAG72093.1| vasa [Trachurus japonicus]
          Length = 657

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 136/336 (40%), Gaps = 64/336 (19%)

Query: 302 VGSGKTLVALIAMAAAVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+ +   + A G            +A+I+AP   L  Q Y   +K+   T 
Sbjct: 265 TGSGKTAAFLLPILQKLMADGVAASQFSELQEPEAIIVAPTRELINQIYLEARKFAFGTC 324

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   ++ G +   H+   +  I  G  +I+ GT     D I   K+ L     +++DE  
Sbjct: 325 VRPVVVYGGVASGHQ---IRDICRG-CNILCGTPGRLLDVIGRGKVGLEKLRYLVLDEAD 380

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK------- 451
           R        +      P +  +  +P +P      TL+ ++    DI ++          
Sbjct: 381 R--------MLDMGFEPDMRRLVGSPGMPTKENRNTLMFSATYPEDIQRMAADFLKTDYL 432

Query: 452 -------PAGRKPIKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
                        ++   I + +    +++++ LK   SE    +     +E K++++F 
Sbjct: 433 FLAVGVVGGACSDVEQTFIEVTKFSKREQLVDLLKATGSERTMVF-----VETKRQADF- 486

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             +  F S  +  T+SI   HG     ++E  +  F++G C +L+AT+V   G+D+ D  
Sbjct: 487 --IATFLSQTKIPTTSI---HGDREQREREQALADFRSGKCPVLVATSVAARGLDIPDVQ 541

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            ++  +  +     +H++ GR GR       +  Y 
Sbjct: 542 HVVNFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFYD 576


>gi|198430581|ref|XP_002121377.1| PREDICTED: similar to DEAD/H box polypeptide RIG-I [Ciona
           intestinalis]
          Length = 1013

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 502 SVVERFNSLHEHFTSSIAIIH-GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           S VE+ +   +  T + A +  G M+   +E  + SF++G CK+++AT+V E G+D+   
Sbjct: 694 SEVEKLHLNPKQLTGAGAAVELGGMTKATQEDTIASFRDGRCKVIVATSVAEEGLDIKAC 753

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           ++II  N     + Q+ Q +GR GR +     IL Y
Sbjct: 754 NLIITYNYSTNEIGQV-QRQGR-GRAKGSKMIILAY 787


>gi|195061826|ref|XP_001996076.1| GH14289 [Drosophila grimshawi]
 gi|193891868|gb|EDV90734.1| GH14289 [Drosophila grimshawi]
          Length = 746

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 146/354 (41%), Gaps = 47/354 (13%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G  A+++AP   LAQQ  +   ++  ++ +   
Sbjct: 345 TGSGKTLGYILPAIVHINNQQPLQRGEGPIALVLAPTRELAQQIQQVATEFGSSSYVRNT 404

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G  P+  + + L+R       I+I T     D     S    +   +++DE  R   
Sbjct: 405 CVFGGAPKGGQMRDLQR----GCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLD 460

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGD-IDISKITEKPAGRKPIK 459
             F  Q R  ++Q       L+ +AT  P+    L    LG+ I I+  + + +    I+
Sbjct: 461 MGFEPQIRKIVSQIRPDRQTLMWSAT-WPKEVKQLAEDFLGNYIQINIGSLELSANHNIR 519

Query: 460 TVIIPINRIDEVIERLKVVLSE----GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            V+   +   +  ++LK +LS+     +    I   +E K+       V+        F 
Sbjct: 520 QVVDVCDEFSKE-DKLKSLLSDIYDTSENPGKIIIFVETKRR------VDNLVRFIRSFG 572

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHF 571
                IHG  S  +++ V+  F++G   +L+AT V   G+DV     +I     +N+E +
Sbjct: 573 VRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDY 632

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
               +H++ GR GR     +    +    +K + + + VLK        A E+L
Sbjct: 633 ----IHRI-GRTGRSNTKGTSFAFFTKNNAKQAKSLVDVLKEANQEINPALENL 681


>gi|194758757|ref|XP_001961625.1| GF15062 [Drosophila ananassae]
 gi|190615322|gb|EDV30846.1| GF15062 [Drosophila ananassae]
          Length = 819

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 147/361 (40%), Gaps = 64/361 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA------------AVEA 320
           PT  Q  AI   LQ     NR + I   + GSGKTL  LI + +             V+ 
Sbjct: 414 PTPIQRQAIPIGLQ-----NRDI-IGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQ 467

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+IMAP   LAQQ  E   K+ Q   I   ++ G +    R +   R+  G   I+I
Sbjct: 468 GPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGL---SREEQGFRLRLG-CEIVI 523

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKL---------TQKAT 419
            T     D ++   L+L     +++DE  R         VQ+ L+          T++A 
Sbjct: 524 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVSNLKPDTEEAE 583

Query: 420 APHVLL---MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
             + L+    T     +T++ T+     + ++  +   R+P    I  + +  E  E++ 
Sbjct: 584 DENKLMENFYTKKKYRQTVMFTATMPPAVERLA-RSYLRRPATVYIGSVGKPTERTEQIV 642

Query: 477 VVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            ++ E  K   +   +    +       N +   +      E    +   +HG      +
Sbjct: 643 YMMGENDKRKKLMEILSRSIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQR 702

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVGR 585
           E  + + K+G   +L+AT V   GID+ D S++I     ++ +A+      H++ GR GR
Sbjct: 703 EYALAALKSGAKDILVATDVAGRGIDIKDVSLVI-----NYDMAKTIEDYTHRI-GRTGR 756

Query: 586 G 586
            
Sbjct: 757 A 757


>gi|164687365|ref|ZP_02211393.1| hypothetical protein CLOBAR_01006 [Clostridium bartlettii DSM
           16795]
 gi|164603789|gb|EDQ97254.1| hypothetical protein CLOBAR_01006 [Clostridium bartlettii DSM
           16795]
          Length = 839

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LH 577
           H  MS+ D++   D F N    +++AT    +GID  D   +I     H+ + Q     +
Sbjct: 278 HAGMSNEDRKINQDKFINDEVNIIVATNAFGMGIDKPDIRWVI-----HYNMPQSIENYY 332

Query: 578 QLRGRVGRGEEISSCILLYHP 598
           Q  GR GR  E S CILL+ P
Sbjct: 333 QEIGRAGRDGEKSECILLFTP 353


>gi|124485198|ref|YP_001029814.1| hypothetical protein Mlab_0371 [Methanocorpusculum labreanum Z]
 gi|124362739|gb|ABN06547.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
           Z]
          Length = 656

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 140/349 (40%), Gaps = 49/349 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT  Q  AI  IL             Q   G+GKT    I +   ++      QA++++P
Sbjct: 28  PTPIQAMAIPQILDGKDVTG------QAQTGTGKTAAFGIPIIERLDPDNKNVQALVLSP 81

Query: 330 ---IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              + I   + +  + KY +   ++   I G  P   + +AL+    G   ++IGT    
Sbjct: 82  TRELAIQTAEEFSRLMKYKKGLNVVP--IYGGQPIERQLRALK----GTVQVVIGTPGRV 135

Query: 387 QDSIQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L      + I+DE  +    G ++ ++   + T      +L +AT     L 
Sbjct: 136 IDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQTILFSATMPQPILD 195

Query: 437 LTSL--GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIE 493
           +T     D    KIT K      I+   I +   D++    + + ++  + A   C    
Sbjct: 196 ITRRFQRDPQFVKITRKELTVPQIEQTYIEVRERDKLEALCRTLDMNNPELALVFC---- 251

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N +  V+   S  +     +  +HG M    ++ VM  F++G+  +LIAT V   
Sbjct: 252 -----NTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVLIATDVAAR 306

Query: 554 GIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GIDV D  I+    + ++ E++    +H++ GR  R       +    P
Sbjct: 307 GIDVDDVDIVFNYDVPQDVEYY----VHRI-GRTARAGRTGKSVTFVAP 350


>gi|60417515|emb|CAI59960.1| ATP-dependent RNA helicase (DEAD/DEAH box family) [Listeria
           ivanovii]
          Length = 474

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 137/348 (39%), Gaps = 58/348 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKT    I +A  V   E   QA+I+ P   LA Q         +  +I   
Sbjct: 44  VAKSQTGSGKTAAFAIPIAEQVIWEENKPQALIIVPTRELAMQVKAECTNIGRFKRIKAA 103

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
            I G  P A ++  L +    + HI++GT     D I+           L+L  VDE   
Sbjct: 104 AIYGQSPFAKQKLELSQ----KNHIVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLS 159

Query: 406 FG-VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            G + Q   + Q        L  +  +P       + D+ I +  + P   +       P
Sbjct: 160 MGFIDQVEDILQFLPKKRQNLFFSATMPE-----EMQDL-IKRYQDDPIVIEMAAEKTNP 213

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--FRSVVERFNSLHEHFTSSIAIIH 522
           I  I+        + +E K+       I E  +S   F +   + + L +    + A IH
Sbjct: 214 ITHIE--------MQTENKEKTLQDVLITENPDSAIIFCNTKNQVDELSDLLQVNTAKIH 265

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII-----IENAEHFGLAQLH 577
           G +   ++   MD FK+G  + LIAT V   GIDV + +++I     IE   +     +H
Sbjct: 266 GGLRQEERFRAMDDFKSGKSRFLIATDVAGRGIDVENVTLVINYDLPIEKENY-----VH 320

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           ++ GR GR               + NS   +S +K  E+  L   ED+
Sbjct: 321 RI-GRTGR---------------AGNSGKAISFVKTNENPLLRDMEDM 352


>gi|27379459|ref|NP_770988.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110]
 gi|27352611|dbj|BAC49613.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 500

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 146/359 (40%), Gaps = 62/359 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI  +L     +  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 23  TPTPIQEQAIPHVLA----RKDVLGIAQ--TGTGKTAAFVLPMLTILEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   +Y    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDAKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIP- 432
             D  +   L+L     +++DE  R         +++  KL         L  TAT  P 
Sbjct: 133 LLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTR--QTLFFTATMPPE 190

Query: 433 -RTLVLTSLGD---IDISK-------ITEK--PAGRKPIKTVIIPINRIDEVIERLKVVL 479
            R +  T L +   +++SK       +T+   PAG+K         +   E++ RL    
Sbjct: 191 IRRITETFLHNPQKVEVSKPATTAVTVTQSQVPAGKK--------AHEKRELLRRLLREA 242

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            + K A   C        +  R V     SL +H   S+  +HG M    + + ++ F+ 
Sbjct: 243 KDLKNAIIFC--------NRKREVAIVHKSLQKH-GFSVGALHGDMDQPARMAALEQFRK 293

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G   LL+A+ V   G+D+ + S +   +  H     +H++ GR GR     + I +  P
Sbjct: 294 GELPLLVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRV-GRTGRAGRSGTAISIVTP 351


>gi|27375556|ref|NP_767085.1| primosome assembly protein PriA [Bradyrhizobium japonicum USDA 110]
 gi|27348693|dbj|BAC45710.1| primosomal protein N' [Bradyrhizobium japonicum USDA 110]
          Length = 736

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 9/133 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q +A+  +    +     + +L G  GSGKT V   A+A A+  G Q++I+ P   L
Sbjct: 204 TPLQRTAVDTMRALAANGTFHVALLDGVTGSGKTEVYFEAVAEAIRRGRQSLILMPEIAL 263

Query: 334 AQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q   F+ ++ Q   +  +E  +   P+  R +    I+ G A +++G   ALF   + 
Sbjct: 264 TGQ---FLDRFAQRFGVRPIEWHSELTPRT-RARNWAAISEGSAPVVVGARSALF---LP 316

Query: 392 YYKLILVIVDEQH 404
           Y  L L++VDE+H
Sbjct: 317 YANLGLIVVDEEH 329


>gi|85703303|ref|ZP_01034407.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217]
 gi|85672231|gb|EAQ27088.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217]
          Length = 515

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 78/382 (20%), Positives = 151/382 (39%), Gaps = 58/382 (15%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------L 308
           +N+  K+ + I      +PT  Q  AI   LQ       +L I Q   G+GKT      +
Sbjct: 7   LNLNPKVLKAIEEAGYETPTPIQAEAIPHALQGRD----VLGIAQ--TGTGKTASFTLPM 60

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           ++L++   A     +++++ P   LA Q  E    Y+++ ++   ++ G +    + K +
Sbjct: 61  LSLLSRGRARARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLI 120

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++       ++I T     D  +  KL+L     ++VDE  R        +      P +
Sbjct: 121 DK----GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADR--------MLDMGFIPDI 168

Query: 424 -LLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             + + TP  R TL  ++    +I +IT       P +  +       E IE+  V+   
Sbjct: 169 ERIFSLTPFTRQTLFFSATMAPEIERITNTFLS-NPARVEVARQATASETIEQGVVMFKP 227

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEH--------------------FTSSIAII 521
            ++        + +K    R++++R      +                    +    A I
Sbjct: 228 TRRE-----NADSEKRRLLRALIDREGEACSNAIIFCNRKVDVDVVSKSLIKYGYDAAPI 282

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG +    +   +D F+ GT + LIA+ V   G+DV   S +   +        +H++ G
Sbjct: 283 HGDLEQSQRTRTLDGFRAGTLRFLIASDVAARGLDVPAVSHVFNFDVPSHAEDYVHRI-G 341

Query: 582 RVGRGEEISSCILLYHPPLSKN 603
           R GR       +++ +P   KN
Sbjct: 342 RTGRAGRAGKALMICNPRDEKN 363


>gi|327254038|gb|EGE65667.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_7v]
          Length = 432

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 127/326 (38%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 20  VQAKTGSGKTAAFGLGLLQKIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 79

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q        L ++++DE  R 
Sbjct: 80  T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNMLVMDEADRM 133

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 134 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAITAISGRVQRDPLAIEIDSTDALPPIEQ 193

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                  K  I  + R+        + L +       C       + + ++V +  N + 
Sbjct: 194 QFYETSSKGKIPLLQRL--------LSLHQPSSCVVFC-----NTKKDCQAVCDALNDIG 240

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S    +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 241 QSALS----LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELVVNFELA 294

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFC 320


>gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
 gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
          Length = 547

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 163/370 (44%), Gaps = 60/370 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I +   ++      QA+++ P   LA Q  E ++K  +    +  
Sbjct: 45  IGQAQTGTGKTAAFSIPLLEKIDPSDKRLQAIVLCPTRELAIQVSEEVRKLAKYLHGVKT 104

Query: 354 I-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRF- 406
           + I G  P   + KAL+    G   +IIGT     D I    L      +V++DE     
Sbjct: 105 LPIYGGQPIDRQIKALK----GGVQVIIGTPGRVIDHINRKTLKPSTVKMVVMDEADEML 160

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             G ++ ++           ++++TP  R T + ++     I ++T+K   ++P+    I
Sbjct: 161 DMGFREDIET----------ILSSTPQERQTSLFSATMPKAILELTQKYQ-KEPVH---I 206

Query: 464 PINRIDEVIERLKVVLSEGKKAYWI----------CPQIEEKKESNFRSVVERFNSLHEH 513
            + R +  +  +K    E +K+  +           P++     +  +   E  + L   
Sbjct: 207 KVVRKELTVNNIKQFYIETRKSNKLEVLTRLIDVYNPKLTVVFTNTKKGADELVSDLQAR 266

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAE 569
              + ++ HG +  + ++ VMD F++GT  +L+AT V   GIDV D   +I     ++ E
Sbjct: 267 GYGADSL-HGDLKQVQRDIVMDKFRHGTIDILVATDVAARGIDVDDVECVINYELPQDEE 325

Query: 570 HFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSK----NSYTRLSVLKNTEDGFLIAEED 624
           ++    +H++ GR GR G +  +   ++   + K      YT+  V+K++    +    D
Sbjct: 326 YY----VHRI-GRTGRAGRDGIAFSFVFGREMRKLKDIERYTKSKVMKHS----IPTVND 376

Query: 625 LKQRKEGEIL 634
           ++Q+K G+  
Sbjct: 377 VEQKKIGQFF 386


>gi|228997258|ref|ZP_04156882.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides
           Rock3-17]
 gi|229009233|ref|ZP_04166534.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides
           Rock1-4]
 gi|228752045|gb|EEM01771.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides
           Rock1-4]
 gi|228762532|gb|EEM11455.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides
           Rock3-17]
          Length = 389

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 136/318 (42%), Gaps = 32/318 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I +   G+GKTL  L+ +   +       Q VI+AP   L  Q +E ++K+T  T I   
Sbjct: 39  IAESPTGTGKTLAYLLPLLHKINPEVKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGA 98

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGV 408
            + G    A  ++ +ER+      +I+G+     + I+  KL +     ++ DE  +   
Sbjct: 99  SLIGG---ADIKRQVERLKK-HPKVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQI-- 152

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
                + QK       ++ +T   R LV  S     ++K  E+ A    ++  ++ I R 
Sbjct: 153 -----VKQKMMEAVFDVIKSTMRDRQLVFFS---ATMTKDAEEVARDFAVEPELVRIKRA 204

Query: 468 -IDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHFT---SSIAII 521
            I  ++E   +V    +K  +I         K   F +   R + + E         A +
Sbjct: 205 EIKSLVEHTYIVCERREKNDYIRRVMHTGNVKAVAFLNDPYRLDEIAEKLKYRKMKAAAL 264

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS-IIIIENAEHFGLAQLHQLR 580
           H   S  ++E+ M +F+ G  ++L+AT +   G+D+ D + +I +E  +   L Q     
Sbjct: 265 HAEASKQEREATMRAFRQGKIEILLATDIAARGLDIDDLTHVIHLELPD--TLDQYIHRS 322

Query: 581 GRVGRGEEISSCILLYHP 598
           GR GR  +  + + L  P
Sbjct: 323 GRTGRMGKEGTVVSLVTP 340


>gi|195437654|ref|XP_002066755.1| GK24389 [Drosophila willistoni]
 gi|194162840|gb|EDW77741.1| GK24389 [Drosophila willistoni]
          Length = 808

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 146/361 (40%), Gaps = 64/361 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA------------AVEA 320
           PT  Q  AI   LQ     NR + I   + GSGKTL  LI + +             V+ 
Sbjct: 403 PTPIQRQAIPIGLQ-----NRDI-IGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQ 456

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+IMAP   LAQQ  E   K+ Q   I   ++ G +    R +   R+  G   I+I
Sbjct: 457 GPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGL---SREEQGFRLRLG-CEIVI 512

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKL---------TQKAT 419
            T     D ++   L+L     +++DE  R         VQ+ L+          T++A 
Sbjct: 513 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAE 572

Query: 420 APHVLL---MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               L+    T     +T++ T+     + ++  +   R+P    I  + +  E  E++ 
Sbjct: 573 DESKLMENFYTKKKYRQTVMFTATMPPAVERLA-RSYLRRPATVYIGSVGKPTERTEQIV 631

Query: 477 VVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            ++ E  K   +   +    +       N +   +      E    +   +HG      +
Sbjct: 632 YMMGENDKRKKLMEILSRSIDPPIIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQR 691

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVGR 585
           E  + + K+G   +L+AT V   GID+ D S++I     ++ +A+      H++ GR GR
Sbjct: 692 EYALAALKSGAKDILVATDVAGRGIDIKDVSLVI-----NYDMAKTIEDYTHRI-GRTGR 745

Query: 586 G 586
            
Sbjct: 746 A 746


>gi|206970963|ref|ZP_03231914.1| primosomal protein N' [Bacillus cereus AH1134]
 gi|206733735|gb|EDZ50906.1| primosomal protein N' [Bacillus cereus AH1134]
          Length = 801

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA ++ G +A+++ P
Sbjct: 262 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLKKGKEAIVLVP 321

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 322 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAIFA 377

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 378 P---FENLGIIIIDEEHESSYKQ 397


>gi|148726561|emb|CAN88468.1| novel protein similar to vertebrate eukaryotic translation
           initiation factor 4A, isoform 2 (EIF4A2, zgc:63783)
           [Danio rerio]
          Length = 382

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 129/291 (44%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + I            
Sbjct: 49  IAQAQSGTGKTATFAISILQQLEIEQKETQALVLAPTRELAQQIQKVILALGDYMGASCH 108

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HI++GT     D       S ++ K+ +L   DE   
Sbjct: 109 ACIGG---TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 165

Query: 406 FGVQQRL-KLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++ ++ QK +T   V+L++AT +P           D+ ++T K   R+P++   I
Sbjct: 166 RGFKDQIYEIFQKLSTNIQVVLLSAT-MP----------ADVLEVTTKFM-REPVR---I 210

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 211 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHA 270

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 271 RDFTVSALHGDMDQKERDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 321


>gi|52143321|ref|YP_083508.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus E33L]
 gi|196039663|ref|ZP_03106967.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|228958407|ref|ZP_04120130.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229091118|ref|ZP_04222341.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-42]
 gi|300118169|ref|ZP_07055917.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus SJ1]
 gi|51976790|gb|AAU18340.1| ATP-dependent RNA helicase (D-E-A-D box family) [Bacillus cereus
           E33L]
 gi|196029366|gb|EDX67969.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|228692249|gb|EEL45985.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-42]
 gi|228801265|gb|EEM48159.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|298724480|gb|EFI65174.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus SJ1]
          Length = 389

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 148/346 (42%), Gaps = 48/346 (13%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           T+ Q+ AI  IL  QD+        I +   G+GKTL  L+ +   +       Q V++A
Sbjct: 22  TEIQKQAIPTILEGQDV--------IAESPTGTGKTLAYLLPLLHKINPEVKQPQVVVLA 73

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L  Q +E ++K+T  T+I    + G    A  ++ +E++      +I+G+     +
Sbjct: 74  PTRELVMQIHEEVQKFTAGTEISGASLIGG---ADIKRQVEKLKK-HPRVIVGSPGRILE 129

Query: 389 SIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            I+  KL +     ++ DE  +   Q+ +   Q        ++ +T   R LV  S    
Sbjct: 130 LIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQD-------VIKSTMRDRQLVFFS---A 179

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWI--CPQIEEKKESN 499
            ++K  E  A    ++  ++ + R +   ++E   ++    +K  ++     + + K   
Sbjct: 180 TMTKAAEDAARDLAVEPHLVRVTRAESKSLVEHTYIICERREKNDYVRRIMHMGDVKAVA 239

Query: 500 FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F +   R + + E         A +H   S  ++E+ M +F+ G  ++L+AT +   GID
Sbjct: 240 FLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGID 299

Query: 557 VVDASIIIIENAEHFGLA----QLHQLRGRVGRGEEISSCILLYHP 598
           + D + +I     H  L     Q     GR GR  +  + + L  P
Sbjct: 300 IDDLTHVI-----HLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTP 340


>gi|320637247|gb|EFX07073.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           G5101]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 127/326 (38%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                  K  I  + R+        + L +       C       + + ++V +  N + 
Sbjct: 219 QFCETSSKGKIPLLQRL--------LSLHQPSSCVVFC-----NTKKDCQAVCDALNEVG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S    +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 QSALS----LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELVVNFELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|291614701|ref|YP_003524858.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584813|gb|ADE12471.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 450

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S   IHG  S +++   +D+FK G   +LIAT V   G+D+    ++I     H     +
Sbjct: 276 SADAIHGDKSQLERMQALDAFKQGRVAVLIATDVAARGLDIDSLPMVINYEIPHAAEDYV 335

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           H++ GR GR     + I L  P
Sbjct: 336 HRI-GRTGRAGASGTAISLVSP 356


>gi|209876956|ref|XP_002139920.1| ATP-dependent RNA helicase [Cryptosporidium muris RN66]
 gi|209555526|gb|EEA05571.1| ATP-dependent RNA helicase, putative [Cryptosporidium muris RN66]
          Length = 406

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 500 FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F + V R   L +  T   SS   IH RM    +  V   F+NG C+ L+++ +I  GID
Sbjct: 276 FCNSVARVELLAKKITELGSSCFYIHARMLQSHRNRVFHDFRNGACRCLVSSDLITRGID 335

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +   +++I  +   +    LH++ GR GR
Sbjct: 336 IQSVNVVINFDFPKYSETYLHRI-GRSGR 363


>gi|167625768|ref|YP_001676062.1| primosomal protein N' [Shewanella halifaxensis HAW-EB4]
 gi|167355790|gb|ABZ78403.1| primosomal protein N' [Shewanella halifaxensis HAW-EB4]
          Length = 731

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 7/116 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   ++ G QA+++ P IG+  Q    F +++     +I   +
Sbjct: 223 LLEGVTGSGKTEVYLAMLETVLKQGKQALVLVPEIGLTPQTINRFRRRFNVKVAVIHSGL 282

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           T N     R  A  +    +A IIIGT +     + Y  +I  I+DE+H    +Q+
Sbjct: 283 TDN----QRLDAWRQARSAEAAIIIGTRSALFTPMLYPGVI--ILDEEHDSSFKQQ 332


>gi|254242152|ref|ZP_04935474.1| hypothetical protein PA2G_02881 [Pseudomonas aeruginosa 2192]
 gi|126195530|gb|EAZ59593.1| hypothetical protein PA2G_02881 [Pseudomonas aeruginosa 2192]
          Length = 446

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 153/369 (41%), Gaps = 67/369 (18%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG- 321
           K L ++ FS PT  Q +AI   L+        LR+     GSGKT   L+ +   + A  
Sbjct: 18  KALESLSFSEPTPVQAAAIPKALEGHD-----LRV-TAQTGSGKTAAFLLPLLHRLLAED 71

Query: 322 -----GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN----MPQAHRRKALERIA 372
                 +A+I+ P   LAQQ  + ++++ Q T I   +ITG     +  A  RK  E   
Sbjct: 72  KPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKNPE--- 128

Query: 373 HGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVL-LM 426
                IIIGT     +      L L     +++DE  R        +     A  VL L 
Sbjct: 129 -----IIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADR--------MLDMGFADDVLALA 175

Query: 427 TATPIP-RTLVLTSLGDIDISKITEKPAG-RKPIKTV-----IIPINRIDEVIERLKV-V 478
            A P   +TL+ ++         T   AG  K I  V     ++ +N++ E+ E ++  V
Sbjct: 176 NACPAELQTLLFSA---------THSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQV 226

Query: 479 LSEGKKAY------WICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           ++    A+      W+       K    +N R   +R           + ++HG     D
Sbjct: 227 ITADDVAHKEQLLQWLLSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKD 286

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEE 588
           ++  ++  K G  K+L+AT V   G+DV    ++I  +    G   +H++ GR GR G E
Sbjct: 287 RKLAIERLKQGAVKILVATDVAARGLDVEGLDLVINFDMPRSGDEYVHRI-GRTGRAGAE 345

Query: 589 ISSCILLYH 597
             +  L+ H
Sbjct: 346 GLAISLICH 354


>gi|89256685|ref|YP_514047.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315095|ref|YP_763818.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502845|ref|YP_001428910.1| DEAD/DEAH box helicase domain-containing protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010493|ref|ZP_02275424.1| hypothetical protein Ftulh_07207 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367994|ref|ZP_04984014.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica 257]
 gi|290954278|ref|ZP_06558899.1| DEAD/DEAH box helicase domain-containing protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295312305|ref|ZP_06803094.1| DEAD/DEAH box helicase domain-containing protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89144516|emb|CAJ79831.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129994|gb|ABI83181.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253804|gb|EBA52898.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica 257]
 gi|156253448|gb|ABU61954.1| DEAD/DEAH box helicase domain protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 569

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 144/334 (43%), Gaps = 47/334 (14%)

Query: 299 QGDVGSGKTLVALIAM-----AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           Q   G+GKT    + +      A+ +   Q +++AP   LA Q  E  + + +N   + V
Sbjct: 50  QAQTGTGKTAAFALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDV 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQH 404
             I G      + +AL++       +++GT     D I+           L+L   DE  
Sbjct: 110 ACIYGGQEYGSQIRALKQ----GVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEML 165

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           R G    ++  L+  +     LL +AT IP           DI+ I E+   R P K  +
Sbjct: 166 RMGFIDDVQFVLSHVSEQCQRLLFSAT-IP----------TDIADIIEEYL-RNPCKIQV 213

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--------RSVVERFNSLHEHF 514
               +    + + K ++ +G +      ++ E +E++          S +E  ++L +  
Sbjct: 214 KAKTKTANTVTQ-KFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTSTIEVADNL-KAL 271

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A I+G M    +E ++D F++    +L+AT V+  GID+   S +I  +  +    
Sbjct: 272 GYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPNDTDT 331

Query: 575 QLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTR 607
            +H++ GR GR G E +S  L+   PL +  + R
Sbjct: 332 YVHRI-GRTGRAGREGTSISLV---PLKEMRFLR 361


>gi|162460883|ref|NP_001105372.1| eukaryotic initiation factor 4A [Zea mays]
 gi|2500522|sp|Q41741|IF4A_MAIZE RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|603190|gb|AAA82736.1| translation initiation factor eIF-4A [Zea mays]
          Length = 410

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 124/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 78  IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 137

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 138 ACVGGTSV----REDQRILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMF--VLDEADEM 191

Query: 404 HRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++        +   V + +AT  P  L +T        K   KP        V
Sbjct: 192 LSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR-------KFMNKP--------V 236

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K       K  W    + +  E+          N R  V+      
Sbjct: 237 RILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKM 296

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 297 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 356

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 357 PENYLHRI-GRSGR 369


>gi|313236291|emb|CBY11611.1| unnamed protein product [Oikopleura dioica]
          Length = 730

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 9/80 (11%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG----LAQLH 577
           H  +S  D+ES+ + F  G  K+++AT    +GID  D   +I     H+G    L   +
Sbjct: 479 HAGLSTDDRESIQNEFLRGQTKVIVATIAFGMGIDKADVRRVI-----HYGIPSSLEAYY 533

Query: 578 QLRGRVGRGEEISSCILLYH 597
           Q  GR GR  + S CI+ ++
Sbjct: 534 QEIGRAGRDGKSSDCIVFFN 553


>gi|296412374|ref|XP_002835899.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629696|emb|CAZ80056.1| unnamed protein product [Tuber melanosporum]
          Length = 547

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 122/293 (41%), Gaps = 44/293 (15%)

Query: 300 GDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            + GSGKTL   +     + A        G   +++AP   LA Q  + + K+ ++++I 
Sbjct: 170 AETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEVAKFGKSSRIR 229

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G +P+  + + L R       ++I T     D ++  K  L     +++DE  R 
Sbjct: 230 NTCVYGGVPKGPQVRDLSR----GVEVLIATPGRLIDMLETNKTNLRRVTYLVLDEADRM 285

Query: 406 ----FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
               F  Q R  L Q           AT P  +   A+      +  ++G +++S     
Sbjct: 286 LDMGFEPQIRKILGQIRPDRQTCMWSATWPKEVRQLASDFLNDFIQVNIGSLELSANHNI 345

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               + I  VI   ++ D +I+ L+ V+ +      I    +   +      + RF  L 
Sbjct: 346 ----QQIVEVINDYDKRDRLIKHLEKVMDDKNSKCLIFTGTKRTADD-----ITRF--LR 394

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +     +AI HG     +++ V++ FK G   +++AT V   GIDV + + +I
Sbjct: 395 QDGWPCLAI-HGDKQQTERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVI 446


>gi|229099619|ref|ZP_04230547.1| Helicase domain protein [Bacillus cereus Rock3-29]
 gi|228683915|gb|EEL37865.1| Helicase domain protein [Bacillus cereus Rock3-29]
          Length = 374

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 148/354 (41%), Gaps = 70/354 (19%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           +  QE A + +++ + QK      +    G+GKT +    +A A++ G +  I  P   +
Sbjct: 33  STGQELAAQGVMEAVKQKESFF--IWAVCGAGKTEMLFYGIAEALQKGERVCIATPRTDV 90

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             +    +K+   N  I V  + G      +  AL         ++  TH L    ++YY
Sbjct: 91  VLELAPRLKEVFPN--INVAALYGGSLDREKDAAL---------VVATTHQL----LRYY 135

Query: 394 KLILVIV-----------DEQHRFGVQQRLKLTQKATAPHVLLMTATP---IPRTLVLTS 439
           +   V++           D+  ++ V+Q +K  +KA     + +TATP     R L    
Sbjct: 136 RAFHVMIVDEIDAFPYHADQMLQYAVKQAMK--EKAAC---IYLTATPDEEWKRNLRKGK 190

Query: 440 LGDIDISKITEKPAGRKPIKTVIIP------------IN-RIDEVI-ERLKVVLSEGKKA 485
              I +S       GR     + +P            IN RI +V+ + LKV L++    
Sbjct: 191 QKGIVVS-------GRYHRHPLPVPKFCCCGNWKKSLINKRIPQVLLQWLKVYLNKKHPI 243

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +   P +           +E+ + L +     +A +H    D  ++  + +F+ G   LL
Sbjct: 244 FLFVPHVR---------YIEKMSRLLKLLDDRVAGVHA--EDPMRKEKVAAFRKGEIPLL 292

Query: 546 IATTVIEVGIDVVDASIIIIENAEH-FGLAQLHQLRGRVGRG-EEISSCILLYH 597
           + TT++E G+ V +  + ++   E  F  + L Q+ GRVGR  EE    ++ +H
Sbjct: 293 VTTTILERGVTVKNLQVAVLGTEEEIFSESALVQIAGRVGRSFEEPYGEVIYFH 346


>gi|224285398|gb|ACN40422.1| unknown [Picea sitchensis]
          Length = 428

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 124/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   +       QA+++AP   LAQQ  + ++      Q+ V 
Sbjct: 79  IQQAQSGTGKTATFCSGILQQLNYNVPECQALVLAPTRELAQQIEKVMRALGDYLQVRVH 138

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G       R+ L RI     H+++GT           AL  DSI+ +  +L   DE 
Sbjct: 139 ACVGG---TSIREDL-RILQAGVHVVVGTPGRVYDMLRRRALRPDSIKMF--VLDEADEM 192

Query: 404 HRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++        T   V + +AT  P  L +T        K    P        V
Sbjct: 193 LSRGFKDQIYDIFQLLPTNLQVGVFSATMPPEALEITR-------KFMTNP--------V 237

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      ++  W    + +  E+          N R  V+      
Sbjct: 238 RILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKVDWLTDQM 297

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 298 RARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 357

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 358 PENYLHRI-GRSGR 370


>gi|194216574|ref|XP_001490317.2| PREDICTED: similar to Eukaryotic initiation factor 4A-III
           (Eukaryotic translation initiation factor 4A isoform 3)
           (ATP-dependent RNA helicase eIF4A-3) (ATP-dependent RNA
           helicase DDX48) (DEAD box protein 48) (Eukaryotic
           initiation factor 4A-like NUK-34) (Nucl [Equus caballus]
          Length = 375

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 138/333 (41%), Gaps = 79/333 (23%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 61  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 114

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +      G     +  + + ++ +GQ H++ GT     D 
Sbjct: 115 TRELAVQIQKGLLALGDYMNVQCHACIGG---TNVGEDIRKLDYGQ-HVVAGTPGRVFDM 170

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++    +   P   V+L++AT     L +T+
Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI------- 492
               D            PI+ ++                    K+ Y+I P         
Sbjct: 231 KFMTD------------PIRILV--------------------KRFYYIHPLFDPVDWLT 258

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E+ +E+NF                +++ +HG M   ++ES+M  F++G  ++LI+T V  
Sbjct: 259 EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 302

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            G+DV   S+II  +  +     +H++ GR GR
Sbjct: 303 RGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 334


>gi|116333834|ref|YP_795361.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
 gi|116099181|gb|ABJ64330.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
          Length = 452

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 138/320 (43%), Gaps = 36/320 (11%)

Query: 299 QGDVGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           Q   GSGKT   L+ +   +  E   QAVI  P   LA Q     ++     +   EI  
Sbjct: 46  QSQTGSGKTHTFLLPIFNQLTSENQVQAVITTPSRELAYQIRTAAEQLA--AEAPFEIRI 103

Query: 357 GN-MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH---RFG 407
           GN +    +++ +E++ H Q  ++IGT    QD IQ   L +      +VDE       G
Sbjct: 104 GNYVGGTDKQRQIEKLRHYQPQLVIGTPGRVQDLIQSQALDVHTTRQFVVDEADMTLDLG 163

Query: 408 -VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK-PIKTVIIPI 465
            + Q  K+  +      +++ +  IP+ L      D  + K    P   + P  TVI   
Sbjct: 164 FLDQVDKIAGRMPKNLQMMVFSATIPQRL------DPFLRKYMNHPVVEEIPTATVIS-- 215

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSI 518
           + ID  +     + ++G+    +  Q+    E       +N ++ VE+ +   +     +
Sbjct: 216 STIDNWL-----ISTKGQNKNQLIYQLITMGEPYLVLIFANTKTRVEQIHDFLQSQGLKV 270

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+IHG +   +++ VM   KN   + ++AT +   GID+   S +I ++        +H+
Sbjct: 271 AMIHGGIKPRERKRVMREVKNLQFQFVVATDLAARGIDIEGVSHVINDDIPEDLDFFVHR 330

Query: 579 LRGRVGRGEEISSCILLYHP 598
           + GR GR     + I LY P
Sbjct: 331 V-GRTGRQGMPGTAITLYSP 349


>gi|115453811|ref|NP_001050506.1| Os03g0566800 [Oryza sativa Japonica Group]
 gi|122246919|sp|Q10I26|RH34_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 34
 gi|13957631|gb|AAK50586.1|AC084404_11 putative translation initiation factor [Oryza sativa Japonica
           Group]
 gi|108709369|gb|ABF97164.1| Eukaryotic initiation factor 4A-3, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113548977|dbj|BAF12420.1| Os03g0566800 [Oryza sativa Japonica Group]
          Length = 404

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 129/312 (41%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT +  +++   V+      QA+I++P   LA Q    +        I V 
Sbjct: 72  IAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDYINIQVH 131

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRF-- 406
              G        + LE   HG  H++ GT     D I+   L      L+I+DE      
Sbjct: 132 ACIGGKSIGEDIRKLE---HG-VHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLG 187

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V L++AT     L +TS       K    P        V I
Sbjct: 188 RGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTS-------KFMTDP--------VRI 232

Query: 464 PINRIDEVIERLKVVLSEGKKAYW----ICPQIEEKKESN---FRSVVERFNSLHEHFTS 516
            + R +  +E +K      +K  W    +C   +    +    F +   + + L E   S
Sbjct: 233 LVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRS 292

Query: 517 ---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++ +HG M   +++++M  F++G  ++LI T V   G+DV   S++I  +  +   
Sbjct: 293 NNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRE 352

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 353 LYIHRI-GRSGR 363


>gi|325697707|gb|EGD39592.1| primosome assembly protein PriA [Streptococcus sanguinis SK160]
          Length = 795

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I Q + Q +    +L+G  GSGKT V L  +A A+  G  A+++ P I +  Q
Sbjct: 262 QAAAVAAITQKIGQSHSQPVLLEGVTGSGKTEVYLQVIAEALAQGKTAIMLVPEISLTPQ 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               FI ++       V I+   +    +     ++  G A +++G   A+F        
Sbjct: 322 VTDRFISRFGDQ----VAILHSGLSDGEKYDEWRKVERGAAQVVVGARSAIF---APLTN 374

Query: 395 LILVIVDEQHRFGVQQ 410
           +  +I+DE+H    +Q
Sbjct: 375 IGAIIIDEEHESSYKQ 390


>gi|299768643|ref|YP_003730669.1| putative ATP-dependent RNA helicase [Acinetobacter sp. DR1]
 gi|298698731|gb|ADI89296.1| putative ATP-dependent RNA helicase [Acinetobacter sp. DR1]
          Length = 644

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 145/368 (39%), Gaps = 60/368 (16%)

Query: 263 QKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           Q+ L  + F+ PT  QE AI   L+          ++    GSGKT   L+    A+ AG
Sbjct: 15  QQALEGLGFTAPTPVQEQAIPAALEGKDL------LVSSQTGSGKTAAFLLPTLNAL-AG 67

Query: 322 GQAVI----------------MAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHR 364
            + V+                ++P   LAQQ  +    + ++ + + +  I G MP A +
Sbjct: 68  QETVVPFKDRMKAVTQPNILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFAKQ 127

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLTQ 416
            + L+      A +++ T     D +   ++ L     +IVDE  R    G  + L+   
Sbjct: 128 IQQLK-----GAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 417 K--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
           +  A     L+ +AT   R + L S    D  +I  +        T I       +  E 
Sbjct: 183 ELAANRKQTLMFSATFADRIIRLASCMMKDPMRIAIETG--HSTNTDITQTLHWTDGFEH 240

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKE 531
            K +L+     +W+  +  ++    F S  E  + L E       S+  +HG M    + 
Sbjct: 241 KKKLLT-----HWLSDENLDQA-VVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRN 294

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR----GRVGRGE 587
             + S + G  K+L+AT V   G+DV   S +I     +FGL   H+      GR GR  
Sbjct: 295 RRLRSIREGRAKILVATDVAARGLDVPTISHVI-----NFGLPMKHEDYVHRIGRTGRAG 349

Query: 588 EISSCILL 595
                I L
Sbjct: 350 RTGQAITL 357


>gi|301096912|ref|XP_002897552.1| bloom syndrome protein, DEAD/DEAH box helicase [Phytophthora
           infestans T30-4]
 gi|262107012|gb|EEY65064.1| bloom syndrome protein, DEAD/DEAH box helicase [Phytophthora
           infestans T30-4]
          Length = 400

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           N L +H  S+    H   S  D+  V ++++NG   ++ AT    +GI+  D   +I   
Sbjct: 234 NYLFDHGLSA-DFYHAGQSATDRHMVQEAWQNGQLSIVCATIAYGMGINKPDVRYVI--- 289

Query: 568 AEHFGLAQ----LHQLRGRVGRGEEISSCILLYHP 598
             HF +A+     +Q  GR GR  + S CIL Y P
Sbjct: 290 --HFSVAKSIEGYYQEAGRAGRDGKPSQCILFYSP 322


>gi|253572829|ref|ZP_04850228.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385203|ref|ZP_06994762.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
 gi|251837561|gb|EES65653.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262347|gb|EFI05212.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
          Length = 374

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 144/344 (41%), Gaps = 59/344 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM--------AAAVEAGGQA 324
           PT  QE AI   L     K  +L   Q   G+GKT    I +             +G +A
Sbjct: 24  PTPIQEKAIPVALA----KKDILGCAQ--TGTGKTASFAIPIIQHLHLNKGEGKRSGIKA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHGQAHI 378
           +I+ P   LA Q  E I+ Y++ T+I   +I G + Q  +   L +         G+   
Sbjct: 78  LILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDMLHKGIDILVATPGRLLD 137

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPR 433
           ++    +  D+IQY+     ++DE  R    G    +K  L +       L  +AT +P 
Sbjct: 138 LMNQGHIRLDNIQYF-----VLDEADRMLDMGFIHDIKRILPKLPKEKQTLFFSAT-MPD 191

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++  +   +           + P+K  + P +   + I++L V   E K+   +   I 
Sbjct: 192 TIIALTNSLL-----------KNPLKIYVTPKSSTVDSIKQL-VYFVEKKEKSLLLISIL 239

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIA-----------IIHGRMSDIDKESVMDSFKNGTC 542
           +K E   RSV+    S  +H    I             IHG  S   ++S + +FK+G  
Sbjct: 240 QKSED--RSVL--IFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKT 295

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           ++++AT +   GID+ +  ++I  +        +H++ GR GR 
Sbjct: 296 RVMVATDIASRGIDINELPLVINYDLPDVPETYVHRI-GRTGRA 338


>gi|148643558|ref|YP_001274071.1| helicase [Methanobrevibacter smithii ATCC 35061]
 gi|222444945|ref|ZP_03607460.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350482|ref|ZP_05975899.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
           2374]
 gi|148552575|gb|ABQ87703.1| helicase [Methanobrevibacter smithii ATCC 35061]
 gi|222434510|gb|EEE41675.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861264|gb|EFC93562.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
           2374]
          Length = 429

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 27/117 (23%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQL 576
           IHG M+   ++ VM+ F+NG  ++LIAT V   GIDV +  ++    + +N E++    +
Sbjct: 273 IHGDMNQKSRDKVMNKFRNGNIEILIATDVAARGIDVPNVEVVVNYDVPQNPEYY----V 328

Query: 577 HQLRGRVGR------------GEEISSCILLYHPPLSK------NSYTRLSVLKNTE 615
           H++ GR GR            G+EI S   +     SK       SY  +  +KNT+
Sbjct: 329 HRI-GRTGRAGNMGYAFTFVAGKEIYSLRTIKKVTKSKIKQRKIPSYKEMESIKNTQ 384


>gi|47217820|emb|CAG07234.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 737

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 142/336 (42%), Gaps = 38/336 (11%)

Query: 302 VGSGKTLVALIAM------AAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   +  M         +EAG    AVI+ P   L QQ +   K++ +   +   
Sbjct: 147 TGSGKTAAFIWPMLVHIMDQKELEAGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSV 206

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGV 408
            + G      + KAL+      A I++ T     D ++       ++  ++ DE  R   
Sbjct: 207 AVYGGGSMWEQAKALQE----GAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRM-F 261

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
               +   ++ A HV      P  +TL+ ++     I ++  +     PI+ V   I   
Sbjct: 262 DMGFEYQVRSIASHV-----RPDRQTLLFSATFRKKIERLA-RDILVDPIRVVQGDIGEA 315

Query: 469 DE-VIERLKVVLSEGKKAYWICPQIEEKKESN--FRSVVERFNS--LHEHFTS---SIAI 520
           +E V + ++++LS   K  W+  ++ E   S      V ++ NS  L  + T    S+ +
Sbjct: 316 NEDVTQVVELLLSGSDKWSWLTRRLVEFTSSGSVLIFVTKKTNSEELATNLTQEGYSLGL 375

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG M   ++  V+  FK     +L+AT V   G+D+     ++  +         H++ 
Sbjct: 376 LHGDMDQSERNKVISDFKKSNMPILVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRI- 434

Query: 581 GRVGR-GEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           GR GR GE+  +  LL     SK+S     +++N E
Sbjct: 435 GRTGRAGEKGVAYTLL----TSKDSSFAGDLVRNLE 466


>gi|67484120|ref|XP_657280.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|167395584|ref|XP_001741647.1| ATP-dependent RNA helicase eIF4A [Entamoeba dispar SAW760]
 gi|56474536|gb|EAL51901.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
 gi|165893771|gb|EDR21906.1| ATP-dependent RNA helicase eIF4A, putative [Entamoeba dispar
           SAW760]
          Length = 391

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 136/320 (42%), Gaps = 58/320 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  Q+ AI  ++Q      R L I Q   G+GKT    I +   ++      QA++++P
Sbjct: 41  PSAIQQRAIVPLMQ-----GRNL-IAQAQSGTGKTAAFSIGVLQQIDTNSKVCQAILLSP 94

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT------- 382
              LA Q  E +K  +Q   I      G       R+ +E + +G   +++GT       
Sbjct: 95  TRELALQTQEVVKNLSQYLDIKTFACIGG---TSVRETIEALRNG-VQVVVGTPGRVLDM 150

Query: 383 ---HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL-MTATPIPRTLVLT 438
               A+  ++++Y  LIL   DE    G + ++    K+    V + M +  +P      
Sbjct: 151 LDRQAIDPNTVKY--LILDEADEMLSQGFKDQMYTILKSLPSTVQVGMFSATMPADA--- 205

Query: 439 SLGDIDISK-ITEKPA---------GRKPIKTVIIPI----NRIDEVIERLKVVLSEGKK 484
               +DISK   E P            + IK   I +     +ID +I+  +V+     +
Sbjct: 206 ----LDISKKFMENPVKILVKKEELTLEGIKQFYIDVVKDEYKIDTLIDLYQVI--SVNQ 259

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +   C         N ++ VE      +     ++I HG ++  ++ +V++ F+ G  ++
Sbjct: 260 SVIFC---------NSKNRVEWIQRRLQAHNYPVSITHGDLTMEERNNVLNEFRQGATRI 310

Query: 545 LIATTVIEVGIDVVDASIII 564
           LI T ++  GIDV   S++I
Sbjct: 311 LITTDMLSRGIDVQQVSLVI 330


>gi|320101371|ref|YP_004176963.1| DEAD/DEAH box helicase domain-containing protein [Desulfurococcus
           mucosus DSM 2162]
 gi|319753723|gb|ADV65481.1| DEAD/DEAH box helicase domain protein [Desulfurococcus mucosus DSM
           2162]
          Length = 929

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 163/388 (42%), Gaps = 63/388 (16%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQH 337
           K++ + ++ +N+ + ++    GSGKT  A+  +   +   G     A+ + P+  L +  
Sbjct: 21  KEVFRKVAYENKSV-LVTAPTGSGKTEAAVFPVFYRIIVDGLKPISAIYITPLRALNRDI 79

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI- 396
              IK+      + V +  G+ P A RR+    +A     ++I T   F   +   KL+ 
Sbjct: 80  ESRIKRIASCFGLRVAVRHGDTPDAARRE----LAVHPPDVLITTPESFMYILVNEKLLP 135

Query: 397 ------LVIVDEQHRFGVQQRLKLTQKATA---------PHVLLMTAT---PIPRTLVLT 438
                  +I+DE H     +R  L               P  + ++AT   P     +L 
Sbjct: 136 SVLNARYLIIDEFHEMVESKRGLLLFTVLHLLEKYHGFKPLKIALSATVSDPHGLAGLLE 195

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRI------DEVIE-RLKVVLSEGKKAYWICPQ 491
           S G +++  +  +   R  +K V++P   +      DE +E RL  +L  G+ AY     
Sbjct: 196 SSGGVEV--VRGEQVKRMEVK-VVVPGGNVSDTLLGDERLESRLLYILRAGE-AYRAVLV 251

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSS------IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
                 +N RS+ E   SL +           IA+ HG +S   +E V   FK G   +L
Sbjct: 252 F-----TNTRSLAEILGSLLKTLAGKQGRSVVIAVHHGSLSRSHREEVEAGFKKGNVNIL 306

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNS 604
           +AT+ +E+GID+     ++    ++    ++ +L  RVGR G  +          +S+ +
Sbjct: 307 VATSSMELGIDIGHVDFVV----QYLSPRRVSRLIQRVGRSGHRLEG--------VSRGA 354

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
                 L +  +  ++ +E LK R E E
Sbjct: 355 VLSTGNLLHVLESLVLVDEALKGRVERE 382


>gi|313898319|ref|ZP_07831856.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2]
 gi|312956701|gb|EFR38332.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2]
          Length = 585

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 136/310 (43%), Gaps = 39/310 (12%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEI 354
           + + G+GKT    I     V  G +   A+I+ P   L  Q    ++K+++  + + +  
Sbjct: 45  RSNTGTGKTAAFGIPAIEKVCQGTRYPNALIICPTRELVTQVATELRKFSKYKEGVKIVP 104

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQ 409
           I G  P   + + L+R       I++GT     D +    L L     VI+DE       
Sbjct: 105 IYGGQPIDRQIQLLKR----GCGIVVGTPGRIMDHLNRRTLKLDNTNMVILDE-----AD 155

Query: 410 QRLKLTQKATAPHVL-LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           + L +  K     +L +M      +T++ ++    +I +IT K     P++  I    R 
Sbjct: 156 EMLNMGFKEDIEEILSMMPEGNEHQTILFSATWPAEILRIT-KEFQNDPVRVEIKSAQRT 214

Query: 469 DEVIERLKVVLSEGKKAYWI-------CPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            + +E++      GKKA  +        P +     +  + V E  + L++H   +I++ 
Sbjct: 215 IDTVEQIYYDAPRGKKANALRVLLSHYDPDLCMIFCNTKKMVDELCDELNKHNIKAISL- 273

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----L 576
           HG M    +  VM+ F++G   +LIAT V   GIDV D  +++     +F + Q     +
Sbjct: 274 HGDMKQEFRSRVMEQFRSGNYPILIATDVAARGIDVDDIDLVV-----NFDIPQDNEYYI 328

Query: 577 HQLRGRVGRG 586
           H++ GR GR 
Sbjct: 329 HRV-GRTGRA 337


>gi|302666438|ref|XP_003024818.1| hypothetical protein TRV_00982 [Trichophyton verrucosum HKI 0517]
 gi|291188891|gb|EFE44207.1| hypothetical protein TRV_00982 [Trichophyton verrucosum HKI 0517]
          Length = 1129

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 75/361 (20%), Positives = 137/361 (37%), Gaps = 48/361 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQH----YEFIKKYTQNTQI 350
           I+     SGK+L+  + M   +E     + + + P   LAQ       + +K       I
Sbjct: 343 IVSTSTSSGKSLIYQVPMLHELEKNPHSRGMYIFPTKALAQDQRRSMLDMLKYMEGLEHI 402

Query: 351 IVEIITGNMPQAHRRKALE--RIAHGQAHI----IIGTHALFQDSIQYYKLILVIVDEQH 404
           +VE   G+ P A R    E  RI      I    I+   +L+++ ++  K   V+VDE H
Sbjct: 403 MVETFDGDTPMASRNAIREEARIIFTNPDILHVTILPNESLWRNFLKNLKY--VVVDELH 460

Query: 405 RFG---------VQQRLKLTQKATAPH------VLLMTATPIPRTLVLTSLGDIDISKIT 449
            +          + +RL+    +               A P      +  + ++ ++ I 
Sbjct: 461 VYNGLFGTHVALIMRRLRRICASIGNSDVKFISCSATVANPEEHMKAIFGIDEVKLTDID 520

Query: 450 EKPAGRKPIKTVIIPI-----------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
             P+GRK       P            + IDE  +    ++  G +    C +I ++ E 
Sbjct: 521 GSPSGRKEFLCWQTPYKDPNDASSGRGSSIDESAKLFCQLILRGVRVIAFC-RIRKQCEY 579

Query: 499 NFRSVVERFNSLHEHFTSSIAIIH-GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +V + F +L+    S   + + G  S  D+  +      G    ++AT  +E+G+D+
Sbjct: 580 LLNAVKDEFRTLNRSDVSRFVMGYRGGYSPQDRRKIEREMFEGKLLGIVATNALELGVDI 639

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
                +I     H  ++   Q  GR GR  + S  IL+     +   Y     + N +D 
Sbjct: 640 GTLDAVITHEFPH-SISNFRQQSGRAGRRNKDSLSILVAGQSAADQHY-----MNNPDDL 693

Query: 618 F 618
           F
Sbjct: 694 F 694


>gi|237716307|ref|ZP_04546788.1| ATP-independent RNA helicase [Bacteroides sp. D1]
 gi|262407911|ref|ZP_06084459.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646741|ref|ZP_06724364.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CC 2a]
 gi|294807729|ref|ZP_06766522.1| DEAD/DEAH box helicase [Bacteroides xylanisolvens SD CC 1b]
 gi|229443954|gb|EEO49745.1| ATP-independent RNA helicase [Bacteroides sp. D1]
 gi|262354719|gb|EEZ03811.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637901|gb|EFF56296.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CC 2a]
 gi|294445165|gb|EFG13839.1| DEAD/DEAH box helicase [Bacteroides xylanisolvens SD CC 1b]
          Length = 444

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 142/374 (37%), Gaps = 60/374 (16%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           +I Q  LRN+        + A   + Q   +K+    IL    GSGKTL  L+ +   ++
Sbjct: 6   EIIQSALRNLKIEELNPMQEA--SLEQATGRKDV---ILLSPTGSGKTLAYLLPLLLTLK 60

Query: 320 AGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 Q +I+ P   LA Q     K     T        G  P A  +K+   I     
Sbjct: 61  PNDDSVQVLILVPSRELALQIDSVFK--AMGTSWKTCCCYGGHPIAEEKKS---ILSNHP 115

Query: 377 HIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLM 426
            IIIGT     D +            LI+   D+   FG    +   +TQ       +L+
Sbjct: 116 AIIIGTPGRITDHLSKGNFNPETIETLIIDEFDKSLEFGFHDEMAEIITQLPGLKKRMLL 175

Query: 427 TATP---IP------RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-NRIDEVIERLK 476
           +AT    IP      RT+ L  L D      +E+   R  +  V+ P  ++ID +   L 
Sbjct: 176 SATDAAEIPEFTGLNRTVKLNFLSDD-----SEEQESRLKLMKVLSPSKDKIDTLYNLLC 230

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            + S     +            N R  V+R + L           HG M   D+E  +  
Sbjct: 231 TLGSASSIVF-----------CNHRDAVDRVHQLLADKKLLAERFHGGMEQPDRERALYK 279

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQLHQLRGRVGRGEEISS 591
           F+NG+C +LI+T +   G+D+ +   II     H+ L     A  H+  GR  R +   +
Sbjct: 280 FRNGSCHVLISTDLAARGLDIPEVGHII-----HYHLPVNEEAFTHR-NGRTARWDATGT 333

Query: 592 CILLYHPPLSKNSY 605
             L+ H      SY
Sbjct: 334 SYLILHAEEKLPSY 347


>gi|242787427|ref|XP_002481004.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218721151|gb|EED20570.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1151

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 74/338 (21%), Positives = 134/338 (39%), Gaps = 43/338 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ----I 350
           I+     SGK+L+  + M   +E     + + + P   LAQ     +K+     +    +
Sbjct: 381 IVSTSTSSGKSLIYQVPMLHELERDPNSRGIYIFPTKALAQDQRRSMKELLNFMEGLDHV 440

Query: 351 IVEIITGNMPQAHRRKALE--RIAHGQAHIIIGTHALFQDSIQYY--KLILVIVDEQHRF 406
           IVE   G+ P   R    +  RI      ++  T    + S + +   L  V+VDE H +
Sbjct: 441 IVETFDGDTPMNERNTIRDEGRIIFTNPDMLHVTILPQEGSWRTFLQNLKFVVVDELHAY 500

Query: 407 G---------VQQRLKLTQKATAPHVL------LMTATPIPRTLVLTSLGDIDISKITEK 451
                     V +RL+    A     +         A P      +  + D+ ++     
Sbjct: 501 NGLFGSHVAFVMRRLRRICAAVGNRRVRFISCSATVANPEEHMKTIFGVDDVRLTDFDGS 560

Query: 452 PAGRK-------PIKTVIIPIN-RIDEVIERLKVVLS---EGKKAYWICPQIEEKKESNF 500
           PAGRK       P K    P + R D + E  ++       G +    C +I ++ E   
Sbjct: 561 PAGRKEFICWNTPFKDPHDPTSGRGDSIAEAARLFCQLVLRGVRVILFC-RIRKQCEIVL 619

Query: 501 RSVVERFNSLHEHFTSSIAIIH-GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV-- 557
            +V   F +L     +++ + + G  S  D+  +     +G    ++AT  +E+G+D+  
Sbjct: 620 AAVRTEFQTLERPEVANLVMGYRGGYSPQDRRQIEKEMFDGKLMGVVATNALELGVDIGS 679

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +DA I +      F ++ L Q  GR GR  + S  +L+
Sbjct: 680 LDAVITL---GFPFSISNLRQQSGRAGRRNKDSLSVLI 714


>gi|213053471|ref|ZP_03346349.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213427378|ref|ZP_03360128.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|289823676|ref|ZP_06543288.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 416

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 139/327 (42%), Gaps = 56/327 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQI 350
           + +   GSGKT    + +   ++      QA+++ P   LA Q       + ++  NT+I
Sbjct: 3   VCKARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKI 62

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI----- 399
           +   + G  P   +R +L+       HII+ T     D +Q   +      ILV+     
Sbjct: 63  LT--LCGGQPFGAQRDSLQH----APHIIVATPGRLLDHLQKETVSLDALHILVMDEADR 116

Query: 400 ---------VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
                    +DE  RF    R  L   AT P  +   +  + +  +      I+I  +  
Sbjct: 117 MLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPI-----RIEIDTVDA 171

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            PA    I+      +   E I  L+ +LS+ + A  +   +    + + ++V +  N++
Sbjct: 172 LPA----IEQQFFETS-AHEKISLLQTLLSQHQPASCV---VFCNTKKDCQAVCDALNAV 223

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            +   S++A+ HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E 
Sbjct: 224 GQ---SALAL-HGDLEQRDRDQTLVRFANGSARILVATDVAARGLDI--KSLELVVNYEL 277

Query: 571 FGLAQLHQLR-GRVGR----GEEISSC 592
               ++H  R GR  R    G  IS C
Sbjct: 278 AWDPEVHVHRIGRTARAGSSGLAISFC 304


>gi|193669397|ref|XP_001951491.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Acyrthosiphon
           pisum]
          Length = 401

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 142/340 (41%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           P+  Q+ AIK ++     K R + I Q   G+GKT    IAM  ++++     Q + ++P
Sbjct: 51  PSAIQQRAIKPMI-----KGRDV-IAQAQSGTGKTATFSIAMLQSIDSQLRDTQVLCLSP 104

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +      G     +  + L ++  GQ HI+ GT     D 
Sbjct: 105 TRELAVQIQKVVLALGDYLNVQCHACIGG---TNLGEDLRKLDFGQ-HIVSGTPGRVFDM 160

Query: 390 IQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+           L+L   DE    G ++++    +   P   V+L++AT     L +T+
Sbjct: 161 IRRKALRTRNIKTLVLDEADEMLNKGFKEQIYDVYRFLPPATQVILISATLPHEILEMTN 220

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGKKA 485
               D  +I  K      + IK   + + R +   + L             +  S  +K 
Sbjct: 221 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCSTKRKV 280

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ +ESNF                +++ +HG M   +++++M  F+ G  ++L
Sbjct: 281 DWLT---EKMRESNF----------------TVSSMHGDMPQKERDAIMKEFRAGQTRVL 321

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I T +   GIDV   S++I  +  +     +H++ GR GR
Sbjct: 322 ITTDIWARGIDVQQVSLVINYDLPNNRELYIHRI-GRSGR 360


>gi|194894625|ref|XP_001978097.1| GG17877 [Drosophila erecta]
 gi|190649746|gb|EDV47024.1| GG17877 [Drosophila erecta]
          Length = 1222

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 158/366 (43%), Gaps = 50/366 (13%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AAA 317
           +LR + F  PT  Q  AI  I   MS ++ ++ I +   GSGKTL  ++ M        +
Sbjct: 523 VLRRLGFEKPTPIQCQAIPAI---MSGRD-LIGIAK--TGSGKTLAFILPMFRHILDQPS 576

Query: 318 VEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           +E G  A+  IMAP   L  Q  + I+K++++  +    + G    + +   L+R     
Sbjct: 577 LEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR----G 632

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF---GVQ-QRLKLTQKATAPHV 423
           A II+ T     D +           ++  V++DE  R    G + Q +++         
Sbjct: 633 AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQ 692

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +M +   PR +   +   +           +KPI+ ++   + + + +E+  V+L++  
Sbjct: 693 TVMFSATFPRQMEALARRIL-----------KKPIEVIVGGRSVVCKDVEQNVVILNDDA 741

Query: 484 KAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDS 536
           K + +   +   +E+     F    E  + L      +      +HG +   D++S +  
Sbjct: 742 KFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIID 801

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR  +  S     
Sbjct: 802 FKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRC-GRTGRAGKKGSAYTFI 860

Query: 597 HPPLSK 602
            P  S+
Sbjct: 861 TPEQSR 866


>gi|149189294|ref|ZP_01867580.1| DNA and RNA helicase [Vibrio shilonii AK1]
 gi|148836853|gb|EDL53804.1| DNA and RNA helicase [Vibrio shilonii AK1]
          Length = 477

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 63/314 (20%), Positives = 130/314 (41%), Gaps = 34/314 (10%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            G+GKT    + +   + +G +       A+I+ P   LA Q +E + KY+ N  +  + 
Sbjct: 47  TGTGKTAGFALPLLERLNSGQRVKGNHIRALILTPTRELAAQVHESVFKYSTNLPLTSQC 106

Query: 355 ITGNM---PQAHR-RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
           + G +   PQ  + RK  + +      ++       Q++I++ +L ++++DE  R     
Sbjct: 107 VFGGVKINPQMLKLRKGCDVMVATPGRLL---DLYQQNAIKFSQLEVLVLDEADRMLDMG 163

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
             +  +K       ++   P  R  +L S    +  +   K     PI+  + P N   +
Sbjct: 164 FFRDIKK-------ILDLLPKNRQNLLFSATFSNEIRDLAKGLVNNPIEVSVTPPNSTTK 216

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV---------ERFNSLHEHFTSSIAII 521
           ++E+   V  + +K   +   I++    +++ V+          R     E    +   I
Sbjct: 217 LVEQSLYVTDKKQKPAMLAKLIDD---GSWKQVLVFCKTKHGANRLARFLEGKKITALAI 273

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG  S   +   ++ FK G  ++L+AT +   G+D+     ++  +  H     +H++ G
Sbjct: 274 HGNKSQGARTKALEHFKTGQIRVLVATDIAARGLDIPQLPQVVNFDLPHVSEDYVHRI-G 332

Query: 582 RVGRGEEISSCILL 595
           R GR  E      L
Sbjct: 333 RTGRAGETGKAYSL 346


>gi|149241762|ref|XP_001526351.1| ATP-dependent RNA helicase DDX19B [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013485|sp|A5DZX2|DBP5_LODEL RecName: Full=ATP-dependent RNA helicase DBP5
 gi|146450474|gb|EDK44730.1| ATP-dependent RNA helicase DDX19B [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 511

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 69/325 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           P+K QE A+  +L     KN    I Q   G+GKT    + M + V+      Q + +AP
Sbjct: 139 PSKIQERALP-LLISNPPKNM---IGQSQSGTGKTAAFSLTMLSRVDESIKAPQCICLAP 194

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA---HIIIGTHALF 386
              LA+Q  E ++   + + I  +++   +P +        +  GQA    +++GT  + 
Sbjct: 195 TRELARQTLEVVETMGKYSNITYQLV---VPDS--------VPRGQAISAQVLVGTPGIV 243

Query: 387 QD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            D     +I   K+ + ++DE       Q L  T         L     +PR   L    
Sbjct: 244 HDLINRKAINVAKVKVFVLDEADNMLDAQGLADT--------CLRVKKRLPRDCQLVLFS 295

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKKESNF 500
               +++      RK  +  +   N +    E L V   +G K+ Y  C   E K    F
Sbjct: 296 ATFPTEV------RKYAEKFVPNANSLALKQEELNV---KGIKQLYMDCKNQEHK----F 342

Query: 501 RSVVERF------------------NSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKN 539
             + E +                  +SL+        +++I+HG +   D++ ++D F+ 
Sbjct: 343 EVLCELYGLLTIGSSIIFVEQKATADSLYLRMKEEGHTVSILHGGLEVADRDRLIDDFRE 402

Query: 540 GTCKLLIATTVIEVGIDVVDASIII 564
           G  K+LI T V+  GID+   S+++
Sbjct: 403 GRSKVLITTNVLARGIDIATVSMVV 427


>gi|11602713|emb|CAC18543.1| translation initiation factor 4A-like protein [Echinococcus
           multilocularis]
          Length = 403

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 142/346 (41%), Gaps = 69/346 (19%)

Query: 273 PTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIM 327
           P+  Q+ AIK I+  +D+        I Q   G+GKT    IA    ++      Q +I+
Sbjct: 53  PSAIQQRAIKQIILGRDV--------IAQAQSGTGKTATLAIASLQVLDIQLRDTQVLIL 104

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LA Q  + I        +      G        K L+   +GQ HI+ GT     
Sbjct: 105 SPTRELALQIQKVILVLGDFMNVQCHACYGGTNVGEDIKKLD---YGQ-HIVSGTPGRVF 160

Query: 388 DSIQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVL 437
           D I+   L      L+I+DE       G ++++    +   P   V+L++AT     L +
Sbjct: 161 DMIKRRNLRTRTIKLLILDEADEMLDKGFKEQIYDVYRYLPPGTQVVLLSATMPHDILEM 220

Query: 438 TSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGK 483
           TS    D  +I  K      + IK   + + R +   E L             +  +  +
Sbjct: 221 TSKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFETLCDLYDTLTVTQSVIFCNTRR 280

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           KA W+  ++    +SNF                ++ ++HG M   ++E +M +F++   +
Sbjct: 281 KAEWLADKM---CKSNF----------------TVTVMHGDMVQKEREEIMRNFRSSESR 321

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR----GRVGR 585
           +LI T ++  GIDV   S++I     ++GL    +L     GR GR
Sbjct: 322 VLITTDLLARGIDVQQVSMVI-----NYGLPNNRELYIHRIGRSGR 362


>gi|33151690|ref|NP_873043.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
 gi|33147911|gb|AAP95432.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
          Length = 601

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 94/243 (38%), Gaps = 50/243 (20%)

Query: 380 IGTHALFQDSIQYYKLILVIVDEQH-----------RFGVQQRLKLTQKATAPHVLLMTA 428
           + T A F   I + K+ L++VDE H            + +  RL+ T        L  TA
Sbjct: 121 VMTQAFF-SFIFHCKISLIVVDEAHCVSQWGHDFRPEYALLGRLRKTFVGIPLMALTATA 179

Query: 429 TPIPRTLVL---------TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P  R  +L         T LG  D      +P  R  ++    P+ ++ + I R     
Sbjct: 180 DPTTRKDILQHLCLTNPYTYLGSFD------RPNIRYTVQQKFKPLEQLTQFILR----- 228

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +GK     C         N R  VE  +        S+   H  M    +E V ++F+ 
Sbjct: 229 QQGKSGIIYC---------NSRKKVEEISEKLAARKISVMGYHAGMPVQQREMVQEAFQR 279

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILL 595
              ++++AT    +GI+  +   ++     HF L +     +Q  GR GR +  S  +L 
Sbjct: 280 DNIQIVVATIAFGMGINKSNVRFVV-----HFDLPRSIEAYYQETGRAGRDDLPSEAVLF 334

Query: 596 YHP 598
           Y+P
Sbjct: 335 YNP 337


>gi|46446859|ref|YP_008224.1| primosome assembly protein PriA [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400500|emb|CAF23949.1| putative primosomal protein N' [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 745

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 10/168 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
            + Q  A+  I   ++ K     ++ G  GSGKT + L A+  A++     +++ P I +
Sbjct: 207 NEDQAVALNKIDASLNAKIFQTHLIHGITGSGKTEIYLQAIEKALKLEKGTIMLVPEISL 266

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
            AQ    F  ++ +     + I+   + +  RR    +I  G+A II+G   A+F   + 
Sbjct: 267 TAQTIQRFRSRFAEK----IAILHHRLSEGERRDEWHKIREGRAKIIVGARSAIFSPVVN 322

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              L L+IVDE+H    +Q  +++    A  V +M       T+VL S
Sbjct: 323 ---LGLIIVDEEHEQSYKQN-EMSPCYQARDVAVMRGKLAQATVVLGS 366


>gi|16077810|ref|NP_388624.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221308581|ref|ZP_03590428.1| hypothetical protein Bsubs1_04163 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312906|ref|ZP_03594711.1| hypothetical protein BsubsN3_04119 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317830|ref|ZP_03599124.1| hypothetical protein BsubsJ_04073 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322104|ref|ZP_03603398.1| hypothetical protein BsubsS_04164 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81815767|sp|O34750|YFML_BACSU RecName: Full=Putative ATP-dependent RNA helicase yfmL
 gi|2443255|dbj|BAA22326.1| YfmL [Bacillus subtilis]
 gi|2633067|emb|CAB12572.1| putative ATP-dependent RNA helicase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 376

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 147/339 (43%), Gaps = 39/339 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           PT  QE A + I   M  K+    I +   G+GKTL   + +   +   +   QAVI+AP
Sbjct: 27  PTPVQEQAAQLI---MDGKDV---IAESPTGTGKTLAYALPVLERIKPEQKHPQAVILAP 80

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q ++ I+ +   +++    + G    A+ +K +E++     HII+GT     + 
Sbjct: 81  SRELVMQIFQVIQDWKAGSELRAASLIGG---ANVKKQVEKLKK-HPHIIVGTPGRVFEL 136

Query: 390 IQYYKLIL-----VIVDE-------QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL-V 436
           I+  KL +     +++DE       +HR  ++Q +K T +     +L  +AT    T  V
Sbjct: 137 IKAKKLKMHEVKTIVLDETDQLVLPEHRETMKQIIKTTLRDR--QLLCFSATLKKETEDV 194

Query: 437 LTSLG-DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           L  L  + ++ K+    A    +K   +  ++ D+V    K+   EG +A      I   
Sbjct: 195 LRELAQEPEVLKVQRSKAEAGKVKHQYLICDQRDKVKLLQKLSRLEGMQALVFVRDI--- 251

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N     E+    H      + ++H     +++  ++ +F++G   LL+AT +   G+
Sbjct: 252 --GNLSVYAEKLAYHH----VELGVLHSEAKKMERAKIIATFEDGEFPLLLATDIAARGL 305

Query: 556 DVVDASIIIIEN-AEHFGLAQLHQLRGRVGRGEEISSCI 593
           D+ +   +I  +  +  G        GR G+   + S +
Sbjct: 306 DIENLPYVIHADIPDEDGYVHRSGRTGRAGKEGNVLSLV 344


>gi|328790612|ref|XP_003251437.1| PREDICTED: eukaryotic initiation factor 4A-like [Apis mellifera]
          Length = 548

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 128/303 (42%), Gaps = 66/303 (21%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +            
Sbjct: 216 IAQAQSGTGKTATFSISILQQIDTTIKECQALILAPTRELAQQIQKVVIALGDFMHAECH 275

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G     + R+ + ++  G  HI++GT     D I    L        +L   DE   
Sbjct: 276 ACIGG---TNVREDMRKLDQG-VHIVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLS 331

Query: 406 FGVQQRLKLTQKATAPH---VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            G + ++    K   PH   V+L++AT +P  +       +D+SK       R PI+ ++
Sbjct: 332 RGFKDQIHDVFKL-LPHEVQVILLSAT-MPSDV-------LDVSKC----FMRNPIRILV 378

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH----------- 511
                     E L +   EG K ++I     E++E  F ++ + +++L            
Sbjct: 379 KK--------EELTL---EGIKQFFI---YVEREEWKFETLCDLYDTLSITQAVIFCNTR 424

Query: 512 ---EHFTSS-------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              +  T S       ++ +HG M   +++ +M  F+ G+ ++LI T ++  GIDV   S
Sbjct: 425 RKVDWLTESMRTRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVLITTDLLARGIDVQQVS 484

Query: 562 III 564
           ++I
Sbjct: 485 LVI 487


>gi|326916320|ref|XP_003204456.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Meleagris gallopavo]
          Length = 571

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 144/362 (39%), Gaps = 60/362 (16%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL----IAMAAAV-- 318
           +R I F  PT  Q  A   ILQ +     ++ I Q   G+GKTL  L    I +A+    
Sbjct: 182 IRKIGFQKPTPIQSQAWPIILQGID----LIGIAQ--TGTGKTLAYLMPGFIHLASQPIP 235

Query: 319 --EAGGQAV-IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
             E GG  + ++AP   LA Q      KYT      + I  G       RKA   +    
Sbjct: 236 KDERGGPGMLVLAPTRELALQVEAECLKYTYKGYKSICIYGGG-----DRKAQINVVTKG 290

Query: 376 AHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL--LMTA 428
             I+I T     D      I    +  +++DE          K+      P ++  L+  
Sbjct: 291 VDIVIATPGRLNDLQMNNFINLKSITYLVLDEAD--------KMLDMGFEPQIMKILIDV 342

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSEGKK 484
            P  R  V+TS    D  +   K   R P+   I+ +  +D      +E+  VV++E +K
Sbjct: 343 RP-DRQTVMTSATWPDGVRRLAKSYLRNPM---IVYVGTLDLAAVNTVEQKVVVINEEEK 398

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI-------IHGRMSDIDKESVMDSF 537
             ++   I+  K  +   +     S  +   S + +       +HG     D+E  +D F
Sbjct: 399 KAFMENFIDSMKPKDKAIIFVGKKSTADDIASDLGVKGVPVQSLHGDREQCDREQALDDF 458

Query: 538 KNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           K G  ++L+AT +   G+DV D + +       N E +    +H++ GR GR       +
Sbjct: 459 KKGKVRILVATDLASRGLDVHDITHVFNFDFPRNIEEY----VHRV-GRTGRAGRTGKAV 513

Query: 594 LL 595
            L
Sbjct: 514 TL 515


>gi|325688779|gb|EGD30788.1| primosome assembly protein PriA [Streptococcus sanguinis SK115]
          Length = 795

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I Q + Q +    +L+G  GSGKT V L  +A A+  G  A+++ P I +  Q
Sbjct: 262 QAAAVAAITQKIGQSHSQPVLLEGVTGSGKTEVYLQVIAEALAQGKTAIMLVPEISLTPQ 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               FI ++       V I+   +    +     ++  G A +++G   A+F        
Sbjct: 322 VTDRFISRFGDQ----VAILHSGLSDGEKYDEWRKVERGAAQVVVGARSAIF---APLTN 374

Query: 395 LILVIVDEQHRFGVQQ 410
           +  +I+DE+H    +Q
Sbjct: 375 IGAIIIDEEHESSYKQ 390


>gi|238897727|ref|YP_002923406.1| primosomal protein N' (factor Y) directs replication fork assembly
           at D-loops, ATP-dependent [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465484|gb|ACQ67258.1| primosomal protein N' (factor Y) directs replication fork assembly
           at D-loops, ATP-dependent [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 734

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 86/186 (46%), Gaps = 14/186 (7%)

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQ 349
           K  ++ +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     + ++ +   
Sbjct: 217 KQFVVWLLAGVTGSGKTEVYLRVLENLLIEGRQALVLVPEIGLTPQ----IVDRFRERFD 272

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGV 408
           + ++++   +    R     +   G+  I+IGT  ALF     + +L ++++DE+H    
Sbjct: 273 VPIDVLHSGLNHKQRLSVWLKARSGEVAIVIGTRSALF---TPFAQLGIIVIDEEHDGSY 329

Query: 409 QQRLKLTQKATAPHVLLMTATPIP-----RTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           +Q+     +A    V       IP      T  L +L ++++ K  +    +K ++T ++
Sbjct: 330 KQQEGWCYQARDLAVFRAKKENIPIVMGSATPALETLRNVELGKYQKLVLSQKAVQTQLV 389

Query: 464 PINRID 469
               ID
Sbjct: 390 KQKFID 395


>gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 597

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 130/322 (40%), Gaps = 42/322 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
            G+GKT    I + + +E  G        QA+++AP   LA Q  E   +Y+ +  ++ V
Sbjct: 63  TGTGKTAAFAIPILSRLEGAGDGSGPRKPQALVLAPTRELALQVAEAFGRYSAHMPEVRV 122

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQH 404
             I G      +   L R     A +I+GT     D +    L        +L   DE  
Sbjct: 123 LPIYGGQSYGVQLAGLRR----GAQVIVGTPGRVIDHLDRGTLDISELRFLVLDEADEML 178

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIK 459
             G  + ++  L +      V L +AT +P   R L    L D     +  K A  + I 
Sbjct: 179 TMGFAEDVERILAETPDDKQVALFSAT-MPSAIRRLAQRYLNDPQEITVKSKTATAQNIT 237

Query: 460 TVIIPIN---RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
              + ++   ++D +   L+V   +    +    Q  E+     RS             S
Sbjct: 238 QRYLQVSHQRKLDALTRFLEVETFDAMIVFVRTKQATEELAEKLRS----------RGFS 287

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++AI +G M+   +E  ++  K+G   +L+AT V   G+DV   S ++  +  H   + +
Sbjct: 288 AVAI-NGDMAQAQRERTINQLKSGGIDILVATDVAARGLDVDRISHVVNYDIPHDTESYV 346

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           H++ GR GR     + +L   P
Sbjct: 347 HRI-GRTGRAGRAGNALLFVSP 367


>gi|253991719|ref|YP_003043075.1| primosome assembly protein PriA [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638494|emb|CAR67115.1| primosomal protein n'(= factor y)(putative helicase) (primosoma
           protein n') [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253783169|emb|CAQ86334.1| primosomal protein n'(= factor y)(putative helicase) (primosoma
           protein n') [Photorhabdus asymbiotica]
          Length = 739

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +  G QA+I+ P IG+  Q     I+++ +   + V+++
Sbjct: 228 LLAGITGSGKTEIYLSVLENILAQGKQALILVPEIGLTPQT----IRRFNERFNVPVDVL 283

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   G+  IIIGT  ALF     +  L ++I+DE+H    +Q+
Sbjct: 284 HSALNDSERLAVWLRAQRGENAIIIGTRSALF---TPFACLGVIIIDEEHDSSYKQQ 337


>gi|170738828|ref|YP_001767483.1| primosome assembly protein PriA [Methylobacterium sp. 4-46]
 gi|168193102|gb|ACA15049.1| primosomal protein N' [Methylobacterium sp. 4-46]
          Length = 730

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 116/279 (41%), Gaps = 62/279 (22%)

Query: 222 SPARERL---AYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSP---- 273
           +PAR ++   A D  + G+ AL L       E G+  +V +G I   +L  +  +P    
Sbjct: 125 TPARTKVLAVAADGAVRGKRALSL-------EAGVSASVVDGLIDDGVLETVALAPERVA 177

Query: 274 ------------TKSQESAIKDILQDMSQKNRM--------LRILQGDVGSGKTLVALIA 313
                       +++Q  A + ++  ++   R         + +L+G  GSGKT V   A
Sbjct: 178 EPPDPDHPHAALSEAQAEAARALIASLTAPPRTGGPAGDGGVTLLEGVTGSGKTEVYFEA 237

Query: 314 MAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           +A AV  G Q++++ P I + AQ    F  ++          + G      R +    +A
Sbjct: 238 VAEAVRRGVQSLVLMPEIALTAQFLDRFAARFGARPAAWHSGVGGR----RRERIRAGVA 293

Query: 373 HGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQ--------------RLKLTQK 417
            G+  +++G   ALF   + +  L L++VDE+H    +Q              R KL   
Sbjct: 294 AGEIPVVVGARSALF---LPFRSLGLIVVDEEHEAAYKQEDGVCYHARDMAVVRAKLENA 350

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           A    ++L +ATP   T V    G      + E+  GR+
Sbjct: 351 A----LVLASATPSIETRVNAQRGRYRRVVLPERFGGRR 385


>gi|156094360|ref|XP_001613217.1| ATP-dependent helicase [Plasmodium vivax SaI-1]
 gi|148802091|gb|EDL43490.1| ATP-dependent helicase, putative [Plasmodium vivax]
          Length = 720

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 14/144 (9%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S A++HG ++   +E  M  F+ G  ++LIAT +   G+D+ +  ++I     ++    +
Sbjct: 425 SFAVLHGNIAQTTREHTMQRFRQGMFQILIATDIAARGLDISNVDLVIQCFPPNYAEIYI 484

Query: 577 HQLRGRVGRGEEISSCILLYHP-------PLSKNSYTRLSV--LKNTEDGFLIAEEDLKQ 627
           H+  GR GR  +    ++L+          + KN   + S+  L N ED F  A     +
Sbjct: 485 HRA-GRTGRANKKGISVVLFSTEDKQDLVKIEKNCGIKFSIEQLPNNEDVFTSASTMASK 543

Query: 628 RKEGEILGIKQSGMPKFLIAQPEL 651
           +    I  +  S +P F     EL
Sbjct: 544 K----IQNVNPSVLPFFHKTASEL 563


>gi|91206663|sp|Q2UAK1|FAL1_ASPOR RecName: Full=ATP-dependent RNA helicase fal1
 gi|83771282|dbj|BAE61414.1| unnamed protein product [Aspergillus oryzae]
          Length = 398

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 148/354 (41%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    ++++ +   V    QA++++
Sbjct: 46  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVVRESQALVLS 99

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + + ++ +GQ H++ GT     D
Sbjct: 100 PTRELATQIQSVIMALGDYMNVQCHACIGGTNIG---EDIRKLDYGQ-HVVSGTPGRVAD 155

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT +P      
Sbjct: 156 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT-LP------ 208

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E 
Sbjct: 209 ----YDVLDMTTKFMT-DPVRVLV----------KRDELTL-EGIKQYFIAV---EKEEW 249

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 250 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 307

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 308 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENY----IHRI-GRSGR 356


>gi|49476191|ref|YP_034232.1| primosome assembly protein PriA [Bartonella henselae str.
           Houston-1]
 gi|49238999|emb|CAF28299.1| Primosomal replication factor y [Bartonella henselae str.
           Houston-1]
          Length = 736

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 28/166 (16%)

Query: 287 DMSQKNRMLR-----------ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           + S+  R+LR           +L G  GSGKT V   A+A A+  G Q +I+ P   L Q
Sbjct: 206 EQSEAARLLREGVVSAQFQVFLLDGVTGSGKTEVYFEAVAQALIEGKQVLILLPEIALTQ 265

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
           Q   F+ ++     +       ++    R +   ++A G+  ++ G   ALF   + +++
Sbjct: 266 Q---FLDRFHARFGVAAAEWHSDLAPRRRERIWRQVAEGRVRVVAGARSALF---LPFHE 319

Query: 395 LILVIVDEQHRFGVQQRLKL--------TQKATAPH--VLLMTATP 430
           L L++VDE+H    +Q  ++          + +  H  V+L +ATP
Sbjct: 320 LGLIVVDEEHDGAYKQEERIFYHARDMAVARGSFEHFPVILSSATP 365


>gi|328945032|gb|EGG39188.1| primosome assembly protein PriA [Streptococcus sanguinis SK1087]
          Length = 795

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I Q + Q +    +L+G  GSGKT V L  +A A+  G  A+++ P I +  Q
Sbjct: 262 QAAAVAAITQKIGQSHSQPVLLEGVTGSGKTEVYLQVIAEALAQGKTAIMLVPEISLTPQ 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               FI ++       V I+   +    +     ++  G A +++G   A+F        
Sbjct: 322 VTDRFISRFGNQ----VAILHSGLSDGEKYDEWRKVERGAAQVVVGARSAIF---APLTN 374

Query: 395 LILVIVDEQHRFGVQQ 410
           +  +I+DE+H    +Q
Sbjct: 375 IGAIIIDEEHESSYKQ 390


>gi|327462451|gb|EGF08776.1| primosome assembly protein PriA [Streptococcus sanguinis SK1057]
          Length = 795

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I Q + Q +    +L+G  GSGKT V L  +A A+  G  A+++ P I +  Q
Sbjct: 262 QAAAVAAITQKIGQSHSQPVLLEGVTGSGKTEVYLQVIAEALAQGKTAIMLVPEISLTPQ 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               FI ++       V I+   +    +     ++  G A +++G   A+F        
Sbjct: 322 VTDRFISRFGDQ----VAILHSGLSDGEKYDEWRKVERGAAQVVVGARSAIF---APLTN 374

Query: 395 LILVIVDEQHRFGVQQ 410
           +  +I+DE+H    +Q
Sbjct: 375 IGAIIIDEEHESSYKQ 390


>gi|319778451|ref|YP_004129364.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
 gi|317108475|gb|ADU91221.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
          Length = 442

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 59/285 (20%), Positives = 119/285 (41%), Gaps = 31/285 (10%)

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA+Q  + +  Y+    +   +I G +    +++ L R     A I+I T  
Sbjct: 84  LVLTPTRELAEQISKNVNLYSDGLPLKCSLIYGGVDINSQKQELMR----GADIVIATPG 139

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVL-LMTATPIPR-TLVL 437
              D I+   + L     +++DE  R        +      P +L +++  P  R +L+ 
Sbjct: 140 RLLDHIEQRTVNLTQVEFLVLDEADR--------MLDMGFMPDLLRILSNLPKSRQSLLY 191

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I  + +K     P++  +   N     I++    +SE  K   +   +  +  
Sbjct: 192 SATFSENIRSLAQKFLN-NPVEITVASNNSTASTIKQEVYSVSESDKNAALVYILTSRAF 250

Query: 498 ------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                 SN +   +    L  ++  ++  +HG  S +++   +D FK+  C +L+AT V 
Sbjct: 251 NNVIIFSNRKVTCKNLERLLNNYDLAVQSLHGDKSQLERTKALDLFKSSKCNILVATDVA 310

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
             G+D+ D   +I           +H++ GR GR    G  IS C
Sbjct: 311 ARGLDISDVDAVINYELPPTSEDYVHRI-GRTGRAGKKGIAISLC 354


>gi|229196679|ref|ZP_04323422.1| ATP-dependent RNA helicase [Bacillus cereus m1293]
 gi|228586754|gb|EEK44829.1| ATP-dependent RNA helicase [Bacillus cereus m1293]
          Length = 451

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 138/318 (43%), Gaps = 53/318 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 43  IGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINV 102

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 103 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQML 158

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+ +   +   +D  ++ +  +    + T+ 
Sbjct: 159 YFGFLYDIEDILDETPGSKQTMLFSAT-MPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIE 217

Query: 463 IPINRIDEVIER-----LKVVLSEGKK--AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
               R+ E  +R     L+ V+   +   A   C           R+ V R + L+++  
Sbjct: 218 ---QRVIETTDRAKPDALRFVMDRDQPFLAVIFC-----------RTKV-RASKLYDNLK 262

Query: 516 S---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENA 568
               + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ 
Sbjct: 263 GLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDV 322

Query: 569 EHFGLAQLHQLRGRVGRG 586
           E +    +H++ GR GR 
Sbjct: 323 ESY----IHRI-GRTGRA 335


>gi|162661036|gb|EDQ48640.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 397

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 120/279 (43%), Gaps = 33/279 (11%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++ P   LA Q    I++  +    + V  ++G +P   +  +LE      AH+I+G
Sbjct: 10  QGLVLCPTRELADQVTTEIRRLARAEDNVKVVTLSGGVPLRGQNASLEN----GAHVIVG 65

Query: 382 THALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D +    L L     +++DE  R    G    +    K   P           +
Sbjct: 66  TPGRVIDHLDRGNLNLDSLNTLVLDEADRMLDMGFVDDIAKVAKQCPPQ---------RQ 116

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I+K+  +   R P+ TV +      E IE+    + + ++   +   +E
Sbjct: 117 TLLFSATYPEGIAKLAARFM-RDPV-TVKVAAQHSGEQIEQRWYEVDKEERLPSVARLLE 174

Query: 494 E-KKESN--FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             + ES   F +   R  +L E   +   S   +HG +   D++ V+  F NG+C +L+A
Sbjct: 175 HFRPESTLAFCNTKARCRALAELLQAQGYSALELHGDLEQRDRDQVLVRFVNGSCSVLVA 234

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGR 585
           T V   G+DV +   +I  N +     ++H  R GR GR
Sbjct: 235 TDVAARGLDVTNLGAVI--NVDITPDPEVHVHRIGRTGR 271


>gi|218233101|ref|YP_002368669.1| primosome assembly protein PriA [Bacillus cereus B4264]
 gi|296504363|ref|YP_003666063.1| primosome assembly protein PriA [Bacillus thuringiensis BMB171]
 gi|218161058|gb|ACK61050.1| primosomal protein N` [Bacillus cereus B4264]
 gi|296325415|gb|ADH08343.1| primosome assembly protein PriA [Bacillus thuringiensis BMB171]
          Length = 801

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA ++ G +A+++ P
Sbjct: 262 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLKKGKEAIVLVP 321

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 322 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 377

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 378 P---FENLGIIIIDEEHESSYKQ 397


>gi|30249476|ref|NP_841546.1| priA; primosomal protein N' (replication factor Y) [Nitrosomonas
           europaea ATCC 19718]
 gi|30138839|emb|CAD85416.1| probable priA; primosomal protein N' (replication factor Y)
           [Nitrosomonas europaea ATCC 19718]
          Length = 730

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 92/410 (22%), Positives = 158/410 (38%), Gaps = 96/410 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-I 330
           +PT  Q  AI +IL         L  L G  GSGKT V L   A+ +    Q +I+ P I
Sbjct: 195 APTAEQAQAISEILDRTGTFTPWL--LNGITGSGKTEVYLQVTASLLAQQKQVLILVPEI 252

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDS 389
            +  Q    F K++   T  +V + +G +  + R +   +   G+A I++GT  A+F   
Sbjct: 253 NLTPQLEAVFRKRFPGTT--LVSLHSG-LNNSERLQGWLQAQRGKAGIVLGTRLAIF--- 306

Query: 390 IQYYKLILVIVDEQ--HRFGVQQRLKLTQKATAPH--------VLLMTATPIPRTLVLTS 439
               +L L+IVDE+  H F  Q  L+ + +  A +        V+L +ATP   +     
Sbjct: 307 TPMPELSLIIVDEEQDHSFKQQDGLRYSARDLAIYRARQANIPVILGSATPSLESYHQAR 366

Query: 440 LGDIDISKITEKPAGRKPIKTV------IIPINR--IDEVIERLKVVLSEGKKAYWI--- 488
            G   + ++  +   +  + T+      +IP      + V++ L+  L+  +++      
Sbjct: 367 TGRYRLLQLHSRAISQAALPTIRCIDLRVIPAQEGLSEPVLDALRHCLARKQQSLVFINR 426

Query: 489 -----------CPQIEEKKESNFRSVVE-RFNSLHEHFTSS----------------IAI 520
                      C  I   K  + R VV  R   L  H+                   +  
Sbjct: 427 RGYSPVLLCKSCRWIATCKRCSSRLVVHLRDRQLRCHYCGDQQPVSPACPQCGDPDVLPF 486

Query: 521 IHG---------------RMSDIDKESV---------MDSFKNGTCKLLIATTVIEVGID 556
            HG               R+  +D++S+         +D    G   +L+ T ++  G D
Sbjct: 487 GHGTQRVEAALIRHFPEARILRVDRDSIRHKGAWQQMLDRIHRGEADILVGTQLLAKGHD 546

Query: 557 VVDASIIIIENA------------EHFGLAQLHQLRGRVGRGEEISSCIL 594
             + +++   NA            EH   AQL Q+ GR GR     S ++
Sbjct: 547 FPNLALVCALNADASLYSTDFRAEEHL-FAQLIQVAGRAGRANVPGSVLI 595


>gi|238854795|ref|ZP_04645125.1| primosomal protein N' [Lactobacillus jensenii 269-3]
 gi|282933873|ref|ZP_06339221.1| primosomal protein N' [Lactobacillus jensenii 208-1]
 gi|238832585|gb|EEQ24892.1| primosomal protein N' [Lactobacillus jensenii 269-3]
 gi|281301962|gb|EFA94216.1| primosomal protein N' [Lactobacillus jensenii 208-1]
          Length = 797

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 68/138 (49%), Gaps = 7/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
            + Q +A++ I + + +      +L+G  GSGKT V L A++ A++ G  A+++ P I +
Sbjct: 262 NQQQTAALQQINESIERSESKTYLLEGITGSGKTEVYLHAISNALQRGKNALMLVPEISL 321

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
             Q   +   ++ +     V ++   + +  +     RI  G+A +++G  +     +  
Sbjct: 322 TPQMVSQVNARFGKE----VAVLHSGLSEGEKYDEWRRIRRGEARVVVGARSAIFAPLS- 376

Query: 393 YKLILVIVDEQHRFGVQQ 410
             + L+I+DE+H    +Q
Sbjct: 377 -NIGLIIIDEEHEASYKQ 393


>gi|224286258|gb|ACN40838.1| unknown [Picea sitchensis]
          Length = 411

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 124/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   +       QA+++AP   LAQQ  + ++      Q+ V 
Sbjct: 79  IQQAQSGTGKTATFCSGILQQLNYNVPECQALVLAPTRELAQQIEKVMRALGDYLQVRVH 138

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G       R+ L RI     H+++GT           AL  DSI+ +  +L   DE 
Sbjct: 139 ACVGG---TSIREDL-RILQAGVHVVVGTPGRVYDMLRRRALRPDSIKMF--VLDEADEM 192

Query: 404 HRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++        T   V + +AT  P  L +T        K    P        V
Sbjct: 193 LSRGFKDQIYDIFQLLPTNLQVGVFSATMPPEALEITR-------KFMTNP--------V 237

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      ++  W    + +  E+          N R  V+      
Sbjct: 238 RILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKVDWLTDQM 297

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 298 RARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 357

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 358 PENYLHRI-GRSGR 370


>gi|168021119|ref|XP_001763089.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685572|gb|EDQ71966.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 514

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 149/362 (41%), Gaps = 44/362 (12%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIM 327
           ++ +AI+     M+ K R L I   + GSGKTL  L+     V A        G   +++
Sbjct: 115 TEPTAIQAQGWPMALKGRDL-IGLAETGSGKTLAYLLPAIVHVNAQPYLAPGDGPIVLVL 173

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA Q  +   K+  +++I    I G  P+  + + L++       ++I T     
Sbjct: 174 APTRELAVQIQQESTKFGASSKIKNTCIYGGAPKGPQIRDLQK----GVEVVIATPGRLI 229

Query: 388 DSIQ-----YYKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           D ++       ++  +++DE  R     F  Q R  ++Q       L  +AT       L
Sbjct: 230 DMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEFL 289

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                 D  K+T    G   +K      + ID+V+E    V+SE +K   +   +EE  +
Sbjct: 290 ARQFLNDPYKVT---IGSSDLKAN----HAIDQVVE----VVSEHEKYPKLIKLLEEIMD 338

Query: 498 SNFRSVVERFNSLHEHFTSSIAI-------IHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +   V        +  T  + +       IHG  S  +++ V+  FK G   ++ AT V
Sbjct: 339 GSRLLVFMETKRGCDQVTRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 398

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILLYHPPLSKNSYTRLS 609
              G+DV D   +I  N +  G  + +  R GR GR     +    +    +K++   +S
Sbjct: 399 AARGLDVKDIKCVI--NYDFPGSCEDYVHRIGRTGRAGAKGAAYTFFTAANAKHAKELVS 456

Query: 610 VL 611
           +L
Sbjct: 457 IL 458


>gi|156550989|ref|XP_001604385.1| PREDICTED: similar to RE48840p [Nasonia vitripennis]
          Length = 1378

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 136/336 (40%), Gaps = 74/336 (22%)

Query: 302 VGSGKTLVALIAMAAAV-------EAGGQAVIMAPIGILAQQHYEFIK---KYTQNTQII 351
            GSGKTL  LI     +         G   +I++P   L+ Q +  +K   KY  +T  +
Sbjct: 253 TGSGKTLSFLIPAVELIYKLKFMPRNGTGCIIISPTRELSMQTFGVLKELMKYHYHTYGL 312

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHR 405
           +      M  A R+   ++++ G  +I++ T     D +Q      Y  L  +I+DE  R
Sbjct: 313 L------MGGASRQTEAQKLSKG-VNIVVATPGRLLDHLQNTPDFLYKNLQCLIIDEADR 365

Query: 406 F---GVQQRLK-----LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
               G ++ LK     L ++      +L +AT   +T  LT+L       + ++P     
Sbjct: 366 ILDIGFEEELKQIINILPKRR---QTMLFSATQTKKTEALTTLA------VKKEP----- 411

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---------KESNFRSVVERFN 508
              V + ++      E+ K  +   ++ Y  CP   EK         K++  + V+  F+
Sbjct: 412 ---VYVGVDD-----EKEKATVEGLEQGYVACPS--EKRFLLLFTFLKKNRQKKVMVFFS 461

Query: 509 SL------HE---HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           S       HE   +    +  IHG+     + +    F N    +L+ T V   G+D+ D
Sbjct: 462 SCMSVKYHHELLNYIDLPVMSIHGKQKQTKRTTTFFQFCNAQSGILLCTDVAARGLDIPD 521

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
              I+  +        +H++ GR  RGE  S   LL
Sbjct: 522 VDWIVQYDPPDDPKEYIHRV-GRTARGEGSSGHALL 556


>gi|238502855|ref|XP_002382661.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus flavus NRRL3357]
 gi|317027125|ref|XP_001400167.2| ATP-dependent RNA helicase FAL1 [Aspergillus niger CBS 513.88]
 gi|317148165|ref|XP_001822547.2| ATP-dependent RNA helicase FAL1 [Aspergillus oryzae RIB40]
 gi|152032452|sp|A5AAE5|FAL1_ASPNC RecName: Full=ATP-dependent RNA helicase fal1
 gi|220691471|gb|EED47819.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus flavus NRRL3357]
          Length = 399

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 148/354 (41%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    ++++ +   V    QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVVRESQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + + ++ +GQ H++ GT     D
Sbjct: 101 PTRELATQIQSVIMALGDYMNVQCHACIGGTNIG---EDIRKLDYGQ-HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT +P      
Sbjct: 157 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT-LP------ 209

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E 
Sbjct: 210 ----YDVLDMTTKFMT-DPVRVLV----------KRDELTL-EGIKQYFIAV---EKEEW 250

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 251 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 308

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 309 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENY----IHRI-GRSGR 357


>gi|149914018|ref|ZP_01902550.1| Possible DNA helicase [Roseobacter sp. AzwK-3b]
 gi|149812302|gb|EDM72133.1| Possible DNA helicase [Roseobacter sp. AzwK-3b]
          Length = 1703

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 68/326 (20%), Positives = 139/326 (42%), Gaps = 46/326 (14%)

Query: 302 VGSGKTLVALI-AMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            G+GK++   I A++   + G   V+++P + ++A Q    ++    +   I  +++  +
Sbjct: 321 TGTGKSICYQIPALSRFDKTGALTVVISPLVALMADQVQGLVRAGISSAVTINGLLS--L 378

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQH---RFG---- 407
           P+  R+ AL ++  G A I++ +    + +     +   ++ L ++DE H   ++G    
Sbjct: 379 PE--RQDALNKVRLGDAAILLISPEQLRSTTVRSVLAQREVGLWVLDEAHCVSKWGHDFR 436

Query: 408 -----VQQRLKLTQKATAPHVLLMTATPIP------RTLVLTSLGDIDISKITEKPAGRK 456
                V + +K +       VL +TAT  P      R+     LG   +  + +  A R 
Sbjct: 437 PDYRYVSRFIKESSGDEPAPVLCLTATAKPDVVQDIRSHFKERLGAELV--LIDGGASRS 494

Query: 457 PIKTVIIPINRIDEVIERLKVVL----SEG-KKAYWICPQIEEKKESNFRSVVERFNSLH 511
            +   ++P  R  ++ + L  +     SEG   A   C           R+  ER     
Sbjct: 495 NLSFQVLPTQRATKMADILDAIEAQLPSEGVSGAVVYCAT---------RNATERVAEFL 545

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +    +    H  +S  DK  + + F+ G  +++ AT    +G+D  D  +++  +    
Sbjct: 546 KQQGIAAERYHAGLSADDKREIQEDFRVGNLRVIAATNAFGMGVDKPDIRLVVHADVPG- 604

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYH 597
            L    Q  GR GR  E ++C+LL++
Sbjct: 605 SLENYLQEAGRAGRDRESANCVLLFN 630


>gi|116872882|ref|YP_849663.1| DEAD-box ATP dependent DNA helicase [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|315303187|ref|ZP_07873846.1| probable ATP-dependent RNA helicase YqfR [Listeria ivanovii FSL
           F6-596]
 gi|116741760|emb|CAK20884.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|313628444|gb|EFR96918.1| probable ATP-dependent RNA helicase YqfR [Listeria ivanovii FSL
           F6-596]
          Length = 435

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 149/346 (43%), Gaps = 38/346 (10%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAVEAGGQAVIM 327
           + PT+ Q+  I  IL+  S       I Q   G+GKT   ++ +I      +   QAVI 
Sbjct: 26  YEPTEVQQKLIPGILKGESI------IGQSQTGTGKTHTFILPIINNVNPEKDAVQAVIT 79

Query: 328 APIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           AP   LA Q Y  I+K T+    +I V+++ G      +++A++++   Q  II+GT   
Sbjct: 80  APSRELATQIYNEIRKVTKFSEKEIAVQLVIGG---TDKQRAIDKLKK-QPQIIVGTPGR 135

Query: 386 FQDSIQYYKLIL-----VIVDEQH---RFGVQQRLK-LTQKATAPHVLLMTATPIPRTL- 435
             D I+   L +     +++DE       G    +  +  K  A   +L+ +  IP+ L 
Sbjct: 136 INDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSATIPQKLK 195

Query: 436 --VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
             +   + +     I  K A  K ++  I+     D+ ++ LK VL  G + Y       
Sbjct: 196 PFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRDK-LDLLKNVLV-GSQPYLAIVFTN 253

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            K  ++     E  N L E     +A IHG ++  +++  M   +N   + ++AT +   
Sbjct: 254 TKTTAD-----EVANGLTERGLK-VAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
           GID+   S ++  N E       +  R GR GR       + L+ P
Sbjct: 308 GIDIQGISHVV--NYELPDDLDFYIHRTGRTGRAGHSGIALTLFEP 351


>gi|47209111|emb|CAF90069.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 415

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 65/348 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG------- 322
           P+  Q+ AIK I+     K R + I Q   G+GKT    +++   ++   +G        
Sbjct: 57  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFCVSVLQCLDIQVSGSTLVQVRE 110

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+AP   LA Q  + +        +      G     +  + + ++ +GQ H++ G
Sbjct: 111 TQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGG---TNVGEDIRKLDYGQ-HVVAG 166

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPI 431
           T     D I+   L        +L   DE    G ++++    +   P   V+L++AT  
Sbjct: 167 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 226

Query: 432 PRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKV 477
              L +T+    D  +I  K      + IK   + + R +              I +  +
Sbjct: 227 HEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVI 286

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
             +  +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F
Sbjct: 287 FCNTKRKVDWL---TEKMREANF----------------TVSSMHGDMPQKERESIMKEF 327

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++G  ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 328 RSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 374


>gi|332362985|gb|EGJ40774.1| primosome assembly protein PriA [Streptococcus sanguinis SK49]
          Length = 795

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I Q + Q +    +L+G  GSGKT V L  +A A+  G  A+++ P I +  Q
Sbjct: 262 QAAAVAAITQKIGQSHSQPVLLEGVTGSGKTEVYLQVIAEALAQGKTAIMLVPEISLTPQ 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               FI ++       V I+   +    +     ++  G A +++G   A+F        
Sbjct: 322 VTDRFISRFGDQ----VAILHSGLSDGEKYDEWRKVERGAAQVVVGARSAIF---APLTN 374

Query: 395 LILVIVDEQHRFGVQQ 410
           +  +I+DE+H    +Q
Sbjct: 375 IGAIIIDEEHESSYKQ 390


>gi|322436878|ref|YP_004219090.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321164605|gb|ADW70310.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 532

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 158/388 (40%), Gaps = 68/388 (17%)

Query: 238 IALLLMRKQFKKEIGIPI---------NVEGKIAQKILRNIPFSPTKSQESAI------K 282
           + +  M  +     G+P+         N+   +  ++      +PT  Q  AI      +
Sbjct: 41  VDVTAMNSEIDPTTGLPMLKGVHFADFNISASLKSRLAAGGFATPTPVQAKAIPPALEGR 100

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-----------AVIMAPIG 331
           DIL   S             G+GKTL  LI M   +EA  +           ++I+ P  
Sbjct: 101 DILATAS------------TGTGKTLSFLIPMIERMEANSEPSTRGKKGPIRSLILLPTR 148

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD--- 388
            LA Q  E   K    ++    ++ G + +  +   L++++ G   +++ T    +D   
Sbjct: 149 ELAMQVLEAYAKINPQSKSDSVLVCGGLSENTQ---LDQLSRG-PRLVVATPGRLEDFLR 204

Query: 389 --SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDI 445
             S+    + ++++DE  R      L   ++       ++ A P  R T+  ++  D +I
Sbjct: 205 RRSVNLNFVEMLVLDEVDRMLDMGFLPAIRR-------IVGALPKTRQTMCYSATLDANI 257

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF----- 500
           ++I      +KP++  I   ++  + +E LKV      +   +  Q+  + E  F     
Sbjct: 258 TEIVRDYV-QKPVRIEIGTTSKPSDQVE-LKVFTVMQDQKLGLLNQMLNEHEGTFLVFSR 315

Query: 501 -RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   +R +   E       +IHG  S   + S +  F  G  ++L+AT V   GIDV D
Sbjct: 316 TKHGADRISKKLEKLGHVADVIHGDRSQSQRTSALKGFSTGRHRILVATDVAARGIDVRD 375

Query: 560 ASIIIIENAEHFGLAQ--LHQLRGRVGR 585
            + ++  N +  G  +  +H++ GR GR
Sbjct: 376 IAHVV--NYDLPGTTEDFVHRI-GRTGR 400


>gi|282916092|ref|ZP_06323855.1| competence protein ComFA [Staphylococcus aureus subsp. aureus D139]
 gi|283769913|ref|ZP_06342805.1| competence protein ComFA [Staphylococcus aureus subsp. aureus H19]
 gi|282320040|gb|EFB50387.1| competence protein ComFA [Staphylococcus aureus subsp. aureus D139]
 gi|283460060|gb|EFC07150.1| competence protein ComFA [Staphylococcus aureus subsp. aureus H19]
          Length = 360

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 159/363 (43%), Gaps = 74/363 (20%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++ F  ++ Q  A + I++ +  +  +L  L    G+GKT +    +  A   G    I+
Sbjct: 22  HLSFELSEQQSYASEHIVRAIRMRQTIL--LYAVTGAGKTEMMFQGIQYARRQGDNIAIV 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA------HIIIG 381
           +P                    ++VEI +  +  A   + ++ I H Q+      H ++ 
Sbjct: 80  SP-----------------RVDVVVEI-SKRIKDAFLNEDID-ILHQQSSQQFEGHFVVC 120

Query: 382 T-HALFQDSIQYYKLILVIVDEQHRF------GVQQRLKLTQKATAPHVLLMTATPIPRT 434
           T H L++   Q++  I +  DE   F       +QQ LK + K      + MTATP P+ 
Sbjct: 121 TVHQLYRFK-QHFDTIFI--DEVDAFPLSMDKSLQQALKSSSKVEHA-TIYMTATP-PKQ 175

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPI--------NRIDEVIERLKVVLSEGKKAY 486
           L    L +I    I + PA R   K++ +P         N+I +++ R+           
Sbjct: 176 L----LSEIPHENIIKLPA-RFHKKSLPVPKYRYFKLNNNKIQKMLYRI----------- 219

Query: 487 WICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            +  QI  ++ +     N  ++++ F S+++   + +  +H    D+ +   ++  +NG 
Sbjct: 220 -LQDQINNQRYTLVFFNNIETMIKTF-SVYKQKITKLTYVHS--EDVFRFEKVEQLRNGH 275

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI-SSCILLYHPPL 600
             ++  TT++E G  + +  +++I+ A  +    L Q+ GRVGR  E  +  +L +H  +
Sbjct: 276 FDVIFTTTILERGFTMANLDVVVID-AHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGV 334

Query: 601 SKN 603
           S N
Sbjct: 335 SMN 337


>gi|170038849|ref|XP_001847260.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167862451|gb|EDS25834.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 709

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 104/458 (22%), Positives = 178/458 (38%), Gaps = 98/458 (21%)

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL--LLM 243
           PE I+ D L K+   +  E +     P+  K F    P    ++ DE+ A ++A   +++
Sbjct: 215 PEIIDWDALNKQCDAARQEQWGKC--PQLVKHFYQEQPEVANMSPDEVAAFRLANNNIVV 272

Query: 244 RKQFKKEIGIP--------------INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
            + FK E G P               +V  ++ ++I +     P+  Q  A   +L+   
Sbjct: 273 DRTFKDE-GKPSEPIPNPCQTFEQAFHVWPELLEEIRKAGFVKPSPIQAQAWPVLLKGED 331

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEA---------GGQAVIMAPIGILAQQHYEF 340
               M+ I Q   G+GKTL  L+     ++          G   ++MAP   LA Q  + 
Sbjct: 332 ----MIGIAQ--TGTGKTLAFLLPAFIHIDGQPVPRGQRGGPNVLVMAPTRELALQIEKE 385

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKL 395
           ++KY Q   I    + G      RR+ ++++  G   III T     D      I    +
Sbjct: 386 VQKY-QFKGIKAICLYGG---GDRRQQIKKVGEG-VEIIICTPGRLNDLVSANVIDITSI 440

Query: 396 ILVIVDEQHRF---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             +++DE  R    G +             R  +   AT P  +   A    +  V   +
Sbjct: 441 TYLVLDEADRMLDMGFEPQIRKLLLDIRPDRQTIMTSATWPPGVRRLAQSYMKNPVQVYV 500

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-----LSEGKKAYWICPQIEEK 495
           G +D++             TV   I  IDE  + ++V+     + +  KA   C +    
Sbjct: 501 GTLDLAAT----------HTVTQQIEVIDEEDKYVRVMGFVKNMGKNDKAIIFCGR---- 546

Query: 496 KESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                     R + L   F  S      IHG     D+E  ++  K+G  ++LIAT V  
Sbjct: 547 --------KTRADDLSSEFVLSGINCQSIHGDRDQADREQALEDIKSGDVRVLIATDVAS 598

Query: 553 VGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRG 586
            G+D+ D + ++      N E +    +H++ GR GR 
Sbjct: 599 RGLDIEDITHVVNYDFPRNIEEY----VHRV-GRTGRA 631


>gi|121595996|ref|YP_987892.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120608076|gb|ABM43816.1| ATP-dependent RNA helicase DbpA [Acidovorax sp. JS42]
          Length = 469

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 130/312 (41%), Gaps = 40/312 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I Q   GSGKT    +AM   +       Q +++ P   LA Q    I++  +    I V
Sbjct: 55  IAQASTGSGKTAAFGLAMVDRLNPRWFAVQGLVLCPTRELADQVATEIRRLARAQDNIKV 114

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G +P   +  +LE      AHI++GT     D ++  KL +     +++DE  R  
Sbjct: 115 VTVYGGVPSRGQIASLEN----GAHIVVGTPGRVMDLMERGKLDIANLKTLVLDEADRML 170

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
              F       + Q       LL +AT  P  +   +   +   ++ +  A     K   
Sbjct: 171 DMGFLADIETVVRQCPAERQTLLFSAT-YPDGIAGLAQRFMRAPQMVKVAAQHGAGKIA- 228

Query: 463 IPINRIDEVIERLKV-----VLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHFT 515
               R  EV  R KV     +L+  + A  I  C       +   R+VV    +L     
Sbjct: 229 ---QRWYEVDAREKVDVVARMLAHFRPASSIAFC-----NTKQQCRNVV---TALQSQGF 277

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           S++A+  G +   +++ V+  F N +C +L+AT V   GID+ D S +I  +        
Sbjct: 278 SALALF-GELEQRERDEVLVQFANKSCSVLVATDVAARGIDIADLSAVINVDVTPDPEVH 336

Query: 576 LHQLRGRVGRGE 587
           +H++ GR GRG+
Sbjct: 337 IHRI-GRTGRGD 347


>gi|94677013|ref|YP_588627.1| primosome assembly protein PriA [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94220163|gb|ABF14322.1| primosomal protein N' [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 704

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 9/116 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  G+GKT V L  +   +  G QA+++ P IG+  Q     I ++ +     VE++
Sbjct: 193 LLAGVTGAGKTEVYLTVLENILFKGKQALVLVPEIGLTPQ----IIARFRERFHAPVEVL 248

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              +    R     ++  G + IIIGT  ALF     + +L L+++DE+H    +Q
Sbjct: 249 HSRLNNKERLTVWLKVRRGDSAIIIGTRSALFAP---FTRLGLIVIDEEHDCSYKQ 301


>gi|6014919|sp|O61305|DDX19_DROME RecName: Full=DEAD-box helicase Dbp80
 gi|3108197|gb|AAC23709.1| DEAD-box helicase [Drosophila melanogaster]
          Length = 460

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 143/349 (40%), Gaps = 68/349 (19%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+K QE+A+  +L D  Q      I Q   G+GKT   ++AM + V       Q + ++
Sbjct: 95  TPSKIQETALPTLLADPPQN----MIAQSQSGTGKTAAFVLAMLSRVNVCLNHPQVLCLS 150

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   +  Q  + I       +  A R + ++R    + HI+IGT     D
Sbjct: 151 PTYELAIQTGEVAARMGQFCREI------KLRFAVRGEEVDRSKKIEEHILIGTPGKLLD 204

Query: 389 -SIQYY-----KLILVIVDEQHRF----GVQQRLKLTQKATAPH--VLLMTATPIPRTLV 436
             I++      K+ + ++DE        G   +     K   PH  +L  +AT     + 
Sbjct: 205 WGIKFRLFDMKKISVFVLDEADVMIATQGHHDQCIRIHKMLNPHCQMLFFSATYGKEVMD 264

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              L       I   P         II + R +E +E +K         Y++  + EE K
Sbjct: 265 FARL-------IVADPT--------IIRLMREEESLENIK--------QYYVKCKNEEGK 301

Query: 497 ESNFR------SVVERFNSLHEHFTS------------SIAIIHGRMSDIDKESVMDSFK 538
            +  +      SV +     H   T+            S+A++ G ++ + +  V+D F+
Sbjct: 302 YNAIQNIYGCISVGQAIIFCHTKRTAAWLAAKMTSDGHSVAVLTGDLTVVQRLDVLDRFR 361

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIEN--AEHFGLAQLHQLRGRVGR 585
           +G  K+LI T ++  GID+    +++  +   +  G+A       R+GR
Sbjct: 362 SGLEKVLITTNILSRGIDIEQLQVVVNFDLPVDLDGMADCETYLHRIGR 410


>gi|2500517|sp|Q40471|IF4A9_TOBAC RecName: Full=Eukaryotic initiation factor 4A-9; Short=eIF-4A-9;
           AltName: Full=ATP-dependent RNA helicase eIF4A-9
 gi|485951|emb|CAA55736.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 121/312 (38%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYELLDCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++   L        +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLS 196

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V + +AT  P  L +T        K   KP        V I
Sbjct: 197 RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMNKP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 361

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 362 NYLHRI-GRSGR 372


>gi|303239363|ref|ZP_07325891.1| primosomal protein N' [Acetivibrio cellulolyticus CD2]
 gi|302593149|gb|EFL62869.1| primosomal protein N' [Acetivibrio cellulolyticus CD2]
          Length = 816

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 9/140 (6%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           R  P  PT+ QE  +  + + +  K     +L G  GSGKT V L  +  A+ AG QA++
Sbjct: 270 RTSPLRPTEEQEHILVKVKEMLDSKAFNEVLLHGITGSGKTEVYLQLIDHAINAGKQAIV 329

Query: 327 MAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-A 384
           + P I +  Q    F  ++ +     V ++   +    R      I  G   + +G   A
Sbjct: 330 LVPEISLTPQMVERFKGRFGE----YVAVLHSRLSLGERYDQWRLIKSGNIKVAVGARSA 385

Query: 385 LFQDSIQYYKLILVIVDEQH 404
           +F     +  L ++I+DE+H
Sbjct: 386 VFA---PFDNLGIIIIDEEH 402


>gi|257126968|ref|YP_003165082.1| primosomal protein N' [Leptotrichia buccalis C-1013-b]
 gi|257050907|gb|ACV40091.1| primosomal protein N' [Leptotrichia buccalis C-1013-b]
          Length = 760

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 97/484 (20%), Positives = 190/484 (39%), Gaps = 132/484 (27%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGK---IAQKILRNIPFSPTKSQESAIKD---ILQDMSQ 290
           ++ ++ ++K F  EI +   V  K   I +K++ N   S  +  +S I +   IL D  Q
Sbjct: 142 EVTVVTLKKNFSSEI-VERAVNEKVISIEKKVILNSKISKREKGKSEIVEKEIILNDEQQ 200

Query: 291 K--------NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           K           + +L+G  GSGKT + +  +  A++ G  ++ + P   L  Q  + ++
Sbjct: 201 KAVDTIKNSENQIFLLKGITGSGKTEIYINLIKEALKQGFGSIFLVPEISLTVQMIQRLE 260

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +   N    V I+   +    +R+    I +G+  I+IG  +     +Q  K I  IVDE
Sbjct: 261 EEFHNE---VAILHSKLTDKEKREEWTFIRNGEKKIVIGARSAVFAPVQNLKYI--IVDE 315

Query: 403 QH----------RFGVQ-----------QRLKLTQ--------------------KATAP 421
           +H          R+ V+           + LK  +                    K+   
Sbjct: 316 EHENTYKQENNPRYHVKNVAIKRAFLQNENLKKDEKLEKNSELEKNDNLEEAEIVKSEKI 375

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI-----DEVIERL- 475
            V+L +ATP   T      GDI++ ++T++    K  K  I+ +N       +E+++++ 
Sbjct: 376 KVILGSATPSFETYYQAQQGDIELIELTKRYKNAKLPKFEIVDLNETTENFSEELLDKIS 435

Query: 476 -------KVVLSEGKKAYW------------ICPQI---------EEKKESNFRSVVERF 507
                  +V+L   +KA+              CP           + + + ++    +RF
Sbjct: 436 QTLQKNEQVILILNRKAFSNLLKCKDCGNIPTCPNCSISLNYYKYDNRLKCHYCGYEKRF 495

Query: 508 NSLHEHFTS-----------------SIAIIHGRMSDIDKESV---------MDSFKNGT 541
           ++  +                     +IA    ++  +D ES+          + FKN  
Sbjct: 496 DNTCDECGGHKMRQIGAGTEKIEEELAIAFPSAKIVRVDSESIKTKQNYEKAYNDFKNHK 555

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAE------HFGLAQ-----LHQLRGRVGRGEEIS 590
             +++ T +I  G+   + +++ + NA+       F  ++     L Q  GR GRGE+  
Sbjct: 556 YDIMLGTQIIAKGLHFSNVTLVGVINADIILNFPDFRASEKTFQLLTQASGRAGRGEKDG 615

Query: 591 SCIL 594
             I+
Sbjct: 616 EVII 619


>gi|195376889|ref|XP_002047225.1| GJ13322 [Drosophila virilis]
 gi|194154383|gb|EDW69567.1| GJ13322 [Drosophila virilis]
          Length = 797

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 121/292 (41%), Gaps = 39/292 (13%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   L+ Q Y   KK+ +   I V    G   +  + KALE+       I++ T 
Sbjct: 355 GLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKALEQ----GCEIVVATP 410

Query: 384 ALFQDSIQY-----YKLILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPR 433
               D ++       ++  +++DE  R    G + +++       P    LL +AT   R
Sbjct: 411 GRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQTLLFSATFKKR 470

Query: 434 TLVLTSLGDIDISKITE---KPAGRKPIKTVII---PINRIDEVIERLKVVLSEGKKAYW 487
              L      D  +I +     A +   + V +   P+ + + ++  L   LSEG    +
Sbjct: 471 IERLARDILTDPVRIVQGDLNEANQDITQHVYVFPNPLQKWNWLLCHLVKFLSEGAVLVF 530

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +  + + +  +N   +V+  N L         ++HG M   D+  V+  FK   C +L+A
Sbjct: 531 VTKKADAETVAN-NLIVKEHNCL---------LLHGDMDQADRNKVITQFKRKECDILVA 580

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQ---LHQLR-GRVGRGEEISSCILL 595
           T V   G+D     I  I N  ++ +A+    H  R GR GR  E  +   L
Sbjct: 581 TDVAARGLD-----IPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAYTL 627


>gi|90578403|ref|ZP_01234214.1| putative ATP-dependent RNA helicase DbpA [Vibrio angustum S14]
 gi|90441489|gb|EAS66669.1| putative ATP-dependent RNA helicase DbpA [Vibrio angustum S14]
          Length = 461

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 137/317 (43%), Gaps = 32/317 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I QG  GSGKT    + +   ++      Q +++ P   LA Q  + I++  +    I V
Sbjct: 45  IAQGKTGSGKTAAFGLGLLQNLKVKRFRVQTLVLCPTRELADQVAKEIRRLARAIHNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G  P   +  +LE   HG AHII+GT    ++ ++   L L     +++DE  R  
Sbjct: 105 LTLCGGTPFGPQIGSLE---HG-AHIIVGTPGRVEEHVRKGFLCLDELNTLVLDEADRML 160

Query: 407 --GVQQRLK-LTQKATAP-HVLLMTAT-PIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
             G Q  L  +T  A +    LL +AT P     +   +    +    E       I   
Sbjct: 161 EMGFQDSLDAITDVAPSDRQTLLFSATYPTQIASIAKRIMRNPVEVKVESNHDNSSISQH 220

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
              +   D+ +  ++++LS+ +    +  C    E +E +        + L ++  SSIA
Sbjct: 221 FYKVESNDDRLRAVRLLLSQHRPESCVIFCNTKREAQEIS--------DDLEDYGFSSIA 272

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG +   +++  +  F N +  +L+AT V   G+D+ +   +I  +        +H++
Sbjct: 273 L-HGDLEQRERDRTLVLFANKSRSILVATDVAARGLDIDNLDAVINYHLARDTEVHVHRI 331

Query: 580 RGRVGR-GEEISSCILL 595
            GR GR G +  +C L 
Sbjct: 332 -GRTGRAGSKGIACSLF 347


>gi|24642151|ref|NP_573020.2| CG6227 [Drosophila melanogaster]
 gi|7293060|gb|AAF48446.1| CG6227 [Drosophila melanogaster]
 gi|54650792|gb|AAV36975.1| LD41277p [Drosophila melanogaster]
 gi|220951960|gb|ACL88523.1| CG6227-PA [synthetic construct]
 gi|225579871|gb|ACN94142.1| unknown [Drosophila melanogaster]
 gi|225579880|gb|ACN94150.1| unknown [Drosophila melanogaster]
 gi|225579907|gb|ACN94174.1| unknown [Drosophila melanogaster]
 gi|225579925|gb|ACN94190.1| unknown [Drosophila melanogaster]
 gi|225579943|gb|ACN94206.1| unknown [Drosophila melanogaster]
 gi|225579970|gb|ACN94230.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 159/367 (43%), Gaps = 50/367 (13%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AA 316
           ++LR + F  PT  Q  AI  I   MS ++ ++ I +   GSGKTL  ++ M        
Sbjct: 523 EVLRRLGFEKPTPIQCQAIPAI---MSGRD-LIGIAK--TGSGKTLAFILPMFRHILDQP 576

Query: 317 AVEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++E G  A+  IMAP   L  Q  + I+K++++  +    + G    + +   L+R    
Sbjct: 577 SMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR---- 632

Query: 375 QAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF---GVQ-QRLKLTQKATAPH 422
            A II+ T     D +           ++  V++DE  R    G + Q +++        
Sbjct: 633 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDR 692

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
             +M +   PR +   +   +           +KPI+ ++   + + + +E+  V+L++ 
Sbjct: 693 QTVMFSATFPRQMEALARRIL-----------KKPIEVIVGGRSVVCKEVEQHVVILNDD 741

Query: 483 KKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
            K + +   +   +E+     F    E  + L      +      +HG +   D++S + 
Sbjct: 742 AKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTII 801

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR  +  S    
Sbjct: 802 DFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRC-GRTGRAGKKGSAYTF 860

Query: 596 YHPPLSK 602
             P  S+
Sbjct: 861 ITPEQSR 867


>gi|327467213|gb|EGF12717.1| primosome assembly protein PriA [Streptococcus sanguinis SK330]
          Length = 795

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I Q + Q +    +L+G  GSGKT V L  +A A+  G  A+++ P I +  Q
Sbjct: 262 QAAAVAAITQKIGQSHSQPVLLEGVTGSGKTEVYLQVIAEALAQGKTAIMLVPEISLTPQ 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               FI ++       V I+   +    +     ++  G A +++G   A+F        
Sbjct: 322 VTDRFISRFGDQ----VAILHSGLSDGEKYDEWRKVERGAAQVVVGARSAIF---APLTN 374

Query: 395 LILVIVDEQHRFGVQQ 410
           +  +I+DE+H    +Q
Sbjct: 375 IGAIIIDEEHESSYKQ 390


>gi|324991769|gb|EGC23701.1| primosome assembly protein PriA [Streptococcus sanguinis SK353]
          Length = 795

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I Q + Q +    +L+G  GSGKT V L  +A A+  G  A+++ P I +  Q
Sbjct: 262 QAAAVAAITQKIGQSHSQPVLLEGVTGSGKTEVYLQVIAEALAQGKTAIMLVPEISLTPQ 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               FI ++       V I+   +    +     ++  G A +++G   A+F        
Sbjct: 322 VTDRFISRFGDQ----VAILHSGLSDGEKYDEWRKVERGAAQVVVGARSAIF---APLTN 374

Query: 395 LILVIVDEQHRFGVQQ 410
           +  +I+DE+H    +Q
Sbjct: 375 IGAIIIDEEHESSYKQ 390


>gi|325972110|ref|YP_004248301.1| primosomal protein N' [Spirochaeta sp. Buddy]
 gi|324027348|gb|ADY14107.1| primosomal protein N' [Spirochaeta sp. Buddy]
          Length = 654

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 16/168 (9%)

Query: 239 ALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           AL +M    ++EI IP + VE  ++   +  +    +  Q++AIK IL+    +++ +  
Sbjct: 96  ALSMMIPGGRREISIPALEVEEDLSFAKIEQL----SDEQDAAIKAILK----RDKPMYY 147

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           L G  GSGK+ V L    AA+  G   + + P   L  Q     ++ T      V I+  
Sbjct: 148 LYGVTGSGKSEVFLRCAEAAIAEGKAVIYLVPEITLTHQ---LAQQVTSRFANKVAILHS 204

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH 404
            +  + R K  +RI  G+  + IG   A+F     +  L L+I+DE+H
Sbjct: 205 ALTPSQRLKEWKRIISGEVQLAIGARSAVFAP---FENLGLIILDEEH 249


>gi|325102936|ref|YP_004272590.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324971784|gb|ADY50768.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 408

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 131/333 (39%), Gaps = 38/333 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QA 324
           PT  Q  +I  IL        +L I Q   G+GKT    I + + +E           +A
Sbjct: 24  PTDIQFKSIPQILSGQD----ILAIAQ--TGTGKTAAFAIPLISMLERSKPHLDKPTIKA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           V+M P   LA Q  +      + T II   + G +    + K L +     A ++I T  
Sbjct: 78  VVMVPTRELAIQIEQVFLNLGKYTSIIPLAVIGGVEIEPQLKKLNK-----ADVLIATPG 132

Query: 385 -----LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
                +F+  +   ++  +++DE  R   Q      +K       L+T  P  R  +  S
Sbjct: 133 RIMDLVFKGHLYLKQIDFLVLDEADRMLEQGFYNDIKK-------LITLLPKRRQTMFFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  K        KP++  + P + + + ++     +    K +++   I+E +   
Sbjct: 186 ATINDTIKDLAYALVNKPVRIQLSPKDPVSKNVDHAVAYVGMDDKRFFLERLIKENQGKK 245

Query: 500 FRSVV------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               V      ER     E        IHG     ++  V+D+F++G  ++LIAT +   
Sbjct: 246 IIVFVRTKIRAERVAKAMERVNIHTETIHGDKDQKNRFQVLDNFRDGKNQILIATDISAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           G+DV     ++  +        +H++ GR GRG
Sbjct: 306 GLDVKGVDFVVNYDLPEVPENYVHRI-GRTGRG 337


>gi|315586245|gb|ADU40626.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 35A]
          Length = 492

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 142/348 (40%), Gaps = 47/348 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++     +A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G       +K  E I      ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQ---SVKKQCEFIKKN-PQVMIATPGRLLDH 151

Query: 390 IQY---YKLI--LVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT---PIPRTLV 436
           ++    +K +  +V++DE         L   ++      +   +LL +AT   PI R   
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKR--- 208

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE-- 494
              L D    KI E P     IK  I P N  +  I +   V++E ++A  I   ++   
Sbjct: 209 ---LAD----KILENP-----IKIHIAPSNITNTDITQRFYVINEHERAKAIMRLLDTQA 256

Query: 495 -KKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            KK   F    +  + LH+   S       +HG M   D+ S + +FK     +L+AT V
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|300361953|ref|ZP_07058130.1| DNA replication factor Y [Lactobacillus gasseri JV-V03]
 gi|300354572|gb|EFJ70443.1| DNA replication factor Y [Lactobacillus gasseri JV-V03]
          Length = 798

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 7/135 (5%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q  A+  I + + +K     +L+G  GSGKT V L A++ A+E    A+++ P I +  Q
Sbjct: 266 QTHALNSIGKSIQKKEAKTFLLEGITGSGKTEVYLHAISIALEQKRNALMLVPEISLTPQ 325

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
              +  +++  N    V ++   + +  +     RI  G+A +++G  +     ++   +
Sbjct: 326 MVKQVKERFGDN----VAVLHSGLSEGEKYDEWRRIRRGEAQVVVGARSAIFAPLK--NI 379

Query: 396 ILVIVDEQHRFGVQQ 410
            L+++DE+H    +Q
Sbjct: 380 GLIVIDEEHESSYKQ 394


>gi|194205947|ref|XP_001917975.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Equus caballus]
          Length = 785

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 136/339 (40%), Gaps = 61/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++            Q +++AP   LA Q        T+ 
Sbjct: 229 IAQARTGTGKTFSFAIPLIEKLQRELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITK- 287

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +   +ER+ +G   I++GT    +D +Q  KL L     V++DE
Sbjct: 288 -KLAVACFYGGTPYGGQ---IERMRNG-IDILVGTPGRIKDHLQNGKLDLTKLKHVVLDE 342

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTAT------PIPRTLVLTSLGDIDIS 446
             +         V++ L +  K  +   P  LL +AT       + +  + ++   +D+ 
Sbjct: 343 VDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDL- 401

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-- 504
                  G+K  KT +         +E L +     ++A  I   I        R+++  
Sbjct: 402 ------IGKKTQKTAM--------TVEHLAIKCHWTQRAAVIGDVIRVYSGYQRRTIIFC 447

Query: 505 ERFNSLHEHFTSSIAI------IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           E      E  + S++I      +HG +    +E  +  F+NG   +L+AT V   G+D+ 
Sbjct: 448 ETKKEAQE-LSQSVSIKLDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIP 506

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +  ++I  +      + +H+  GR GR      CI  Y 
Sbjct: 507 EVDLVIQSSPPKDVESYIHR-SGRTGRAGRTGICICFYQ 544


>gi|195478796|ref|XP_002100656.1| GE17181 [Drosophila yakuba]
 gi|194188180|gb|EDX01764.1| GE17181 [Drosophila yakuba]
          Length = 1215

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 162/366 (44%), Gaps = 50/366 (13%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AAA 317
           +LR + F  PT  Q  AI  I   MS ++ ++ I +   GSGKTL  ++ M        +
Sbjct: 516 VLRRLGFEKPTPIQCQAIPAI---MSGRD-LIGIAK--TGSGKTLAFILPMFRHILDQPS 569

Query: 318 VEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           +E G  A+  IMAP   L  Q  + I+K++++  +    + G    + +   L+R     
Sbjct: 570 LEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR----G 625

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF---GVQ-QRLKLTQKATAPHV 423
           A II+ T     D +           ++  V++DE  R    G + Q +++         
Sbjct: 626 AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQ 685

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +M +   PR +   +   +           +KPI+ ++   + + + +E+  V+L++  
Sbjct: 686 TVMFSATFPRQMEALARRIL-----------KKPIEVIVGGRSVVCKDVEQNVVILNDDA 734

Query: 484 KAYWICP--QIEEKKESNFRSVVERFNS---LHEHFTSSIAI--IHGRMSDIDKESVMDS 536
           K + +     I ++  S    V ++ N+   L +   +S     +HG +   D++S +  
Sbjct: 735 KFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIID 794

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR  +  S     
Sbjct: 795 FKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRC-GRTGRAGKKGSAYTFI 853

Query: 597 HPPLSK 602
            P  S+
Sbjct: 854 TPEQSR 859


>gi|218505708|ref|NP_001136206.1| predicted gene, EG668137 [Mus musculus]
          Length = 411

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 152/349 (43%), Gaps = 75/349 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 61  PSAIQQRAIKQIM-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 114

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +      G     +  + + ++ +GQ H++ GT     D 
Sbjct: 115 TRELAVQIQKGLLALGDYMNVQCHACVGG---TNVGEDIRKLDYGQ-HVVAGTPGRVFDM 170

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++    +   P   V+L++AT     L +T+
Sbjct: 171 IRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTN 230

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                              K +  PI RI  +++R ++ L EG K +++  + EE K   
Sbjct: 231 -------------------KFMTHPI-RI--LVKRDELTL-EGIKQFFVAVEREEWK--- 264

Query: 500 FRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMDS 536
           F ++ + +++L                         +FT  ++ +HG M   ++ES+M  
Sbjct: 265 FDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREANFT--VSSMHGDMPQKERESIMKE 322

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           F++G  ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 370


>gi|71032923|ref|XP_766103.1| RNA helicase [Theileria parva strain Muguga]
 gi|68353060|gb|EAN33820.1| RNA helicase, putative [Theileria parva]
          Length = 1764

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 143/368 (38%), Gaps = 102/368 (27%)

Query: 297  ILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAPIGILAQQHY-EFIKK--YTQNTQII 351
            ++    GSGKTLVA + +    +   G  AV +AP+  LA + + ++ KK  +    Q+ 
Sbjct: 1007 VVAAPTGSGKTLVAELGLFRLFDKFPGKIAVYIAPLKALAHERFKDWCKKLHFKNILQLT 1066

Query: 352  VEIITGNMP-QAH-RRKALERIAHGQAHIIIGTHALFQDSIQYY-------KLILVIVDE 402
             +  + N+  Q H  R  LE+       I+I T   +    +++       K+ LVI+DE
Sbjct: 1067 GDTSSNNLDGQVHSERDELEKY-----DIVITTPEKWDGISRHWRRRKLVTKVGLVIIDE 1121

Query: 403  QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE----------KP 452
             H  G + R  + +   +    +  +T +    +  S    ++++I E           P
Sbjct: 1122 LHLLG-ESRGAIIESIISRQYTINHSTGVELRYICLSTSLSNLNEIAEWMNIPNVYNFSP 1180

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS--- 509
            A R P+K  +         I+   +      KAY  CP++    +  F +++   +S   
Sbjct: 1181 AVR-PVKCNLF--------IDGFSI------KAY--CPRMNSMNKPCFDTIIRHDHSSNV 1223

Query: 510  -----------------------------------------LHEHFTSSIAIIHGRMSDI 528
                                                     L+    + I I H  +S  
Sbjct: 1224 LIFVSSRRQTRMTAQDLVGLLQFYNISFSNTNDTYFFDDEWLNTFVPNGIGIHHAGLSTK 1283

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE----------HFGLAQLHQ 578
            D+E V D F NG  K+LIAT+ +  G++ + A I+II+  E           +    + Q
Sbjct: 1284 DRELVQDLFLNGKLKVLIATSTLAWGVN-LPAKIVIIKGTEFYDGRVKRYIDYSATDIIQ 1342

Query: 579  LRGRVGRG 586
            + GR GR 
Sbjct: 1343 MVGRAGRN 1350



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 9/119 (7%)

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           R+  +++  +K+    P + + K   F S + R N+L      SI+I H  +S  D++ V
Sbjct: 383 RIVEMINRSEKSDLFQPDLAQVKR--FSSQLMRRNNLKLLSDYSISIHHAGLSKSDRDLV 440

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIII-------IENAEHFGLAQLHQLRGRVGR 585
            + FK+G  K+L+ T+ +  G+++   S+II       +    +    +L+Q+ GR GR
Sbjct: 441 EEMFKSGLVKVLVCTSTLAWGVNLPAHSVIIKGTFIGGVGVDRNINNLELNQIMGRAGR 499


>gi|323466623|gb|ADX70310.1| ATP-dependent DNA helicase RecQ [Lactobacillus helveticus H10]
          Length = 599

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 66/326 (20%), Positives = 122/326 (37%), Gaps = 59/326 (18%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK+L   +    A+   G  ++++P+  L +   + +K+      I    +    PQ
Sbjct: 48  TGAGKSLCYQVP---ALMNEGVTLVISPLISLMKDQIDSLKQ----NGINAAALNSTTPQ 100

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQRLK 413
                 L +   G+  +I  T        F+  + +  + LV VDE H   ++G   R  
Sbjct: 101 EEVNPILRQAYEGKIKLIYITPERLAMDYFRYQLNFLDVDLVAVDEAHCISQWGHDFRPA 160

Query: 414 LTQ-------KATAPHVLLMTATPIP--------------RTLVLTSLGDIDISKITEKP 452
             Q         + P +L +TAT  P                 ++TS    +IS      
Sbjct: 161 YRQIFEGINSLKSKPTILALTATATPAVQDDIGQQLNIPQENFIITSFARPNIS------ 214

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
                 K V  P N    + + +K    +    Y           +N R  VE       
Sbjct: 215 -----FKVVNSPQNTQLYIAQYIKAHPDDAGIIY-----------TNTRKKVESLTDYLA 258

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               S+   HG M   ++  + ++F+    ++++AT    +GID  +   ++  ++    
Sbjct: 259 KKGISVGAYHGGMDAKERSQIQEAFQFDEFQVIVATNAFGMGIDKSNVRFVVHASSAR-N 317

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
           +   +Q  GR GR  E S  +++YHP
Sbjct: 318 IESYYQEAGRAGRDGEESEAVMIYHP 343


>gi|312867841|ref|ZP_07728046.1| putative DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
 gi|311096596|gb|EFQ54835.1| putative DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
          Length = 425

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 130/312 (41%), Gaps = 25/312 (8%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +   +    Q   AVI AP   LA Q Y+  ++   +++  + I+   
Sbjct: 53  TGSGKTHTFLLPIFQTLNEDSQQVEAVITAPSRELATQIYQAARQIASHSEKEIRIVN-Y 111

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLK 413
           +    + + +E++   Q HI+IGT     D      +  +K    +VDE         L 
Sbjct: 112 VGGTDKSRQIEKLQVKQPHIVIGTPGRIYDLVASGDLAIHKAHTFVVDEADMTLDMGFLS 171

Query: 414 LTQKATA--PHVL--LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
              K  +  P  L  L+ +  IP+ L         + K    P   + IKT  +  + ID
Sbjct: 172 TVDKIASRLPQQLQFLVFSATIPQKLQPF------LKKYLSNPVMEQ-IKTKTVISDTID 224

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMS 526
             +   K    + ++ Y +   ++      F +   R + LH +  +    +A IHG + 
Sbjct: 225 NWLVSTKG-RDKNEQIYQLTKTLQPYLAMIFVNTKTRADDLHAYLVAQGLKVAKIHGDIP 283

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +++ +M+  KN   + ++AT +   GID+   S +I +         +H++ GR GR 
Sbjct: 284 PRERKRIMNQVKNLDFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRN 342

Query: 587 EEISSCILLYHP 598
                 I LY P
Sbjct: 343 GLPGVAITLYQP 354


>gi|294085407|ref|YP_003552167.1| primosomal protein N' [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664982|gb|ADE40083.1| Primosomal protein N' (replication factor Y) - superfamily II
           helicase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 755

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 9/137 (6%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILA 334
            ++ A  DI+           +L G  GSGKT V   A+ A ++AG Q +I+ P I + +
Sbjct: 222 GEQQAAADIMVAACGTGFHPFLLDGVTGSGKTEVYFEAVKAVLDAGKQVLILLPEIALSS 281

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYY 393
                F +++       VE  + ++  + +RKA   +  G+A +++G   ALF   + + 
Sbjct: 282 GWRSRFARRFGVAP---VEWHS-DIGNSQKRKAWRYVLSGEAKLVVGARSALF---LPFS 334

Query: 394 KLILVIVDEQHRFGVQQ 410
            L L+IVDE+H    +Q
Sbjct: 335 NLGLIIVDEEHEHAYKQ 351


>gi|255077858|ref|XP_002502509.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
 gi|226517774|gb|ACO63767.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
          Length = 790

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 9/117 (7%)

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           GK A  IC   + K+E++     E   +L     + +  +HG ++   +E  +  F++G 
Sbjct: 377 GKGAKAIC-FTQTKREAD-----EVTAALGRRMATEV--LHGDIAQAQRERTLKRFRDGR 428

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             +L+AT V   G+D+ D  +++     H   + +H+  GR GR  +  + I +Y P
Sbjct: 429 FSVLVATDVAARGLDITDVDLVVHYELPHDTESFVHRC-GRTGRANKKGAAIAMYTP 484


>gi|255547101|ref|XP_002514608.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223546212|gb|EEF47714.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 1189

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 155/392 (39%), Gaps = 68/392 (17%)

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           RK    EI   ++   K+A K +       TK      K I+  +++KN ++  +     
Sbjct: 420 RKAIYAEIPHELSDNTKLALKCM-----GITKLYSHQAKSIMASLARKNVVVSTM---TS 471

Query: 304 SGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNM 359
           SGK+L   + +   +       A+ + P   LAQ     +    +  +T I + I  G+ 
Sbjct: 472 SGKSLCYNVPVLEVLSQNLSSCALYLFPTKALAQDQLRALLAMAKEFDTSINIGIYDGDT 531

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLI----LVIVDEQH----RF 406
            Q  R    +      A ++I    +   SI     Q+ +++     V++DE H     F
Sbjct: 532 SQTERPWLRD-----NARLLITNPDMLHMSILPFHRQFSRILSNLRFVVIDEAHYYKGAF 586

Query: 407 GVQQRLKLTQ--------KATAPHVLLMTAT---PIPRTLVLTSLGDIDISKITEKPAGR 455
           G    L L +          + P  +  TAT   P    + L +L  +D+  I   P+ +
Sbjct: 587 GCHTALILRRLRRICSHVYGSDPSFIFSTATSANPHEHCMELANLSTLDLINIDGSPSTK 646

Query: 456 K------PIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICP--QIEEKKESNFRSVV 504
           K      PI   ++     N I EV      ++  G +    C   ++ E   S  R ++
Sbjct: 647 KLFALWNPIVCALLLSFFDNPISEVSYLFAEMIQHGLRCIAFCKSRKLTELVLSYTREIL 706

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV--VDASI 562
           ++      H  + I    G  +  ++  +   F +GT   + AT  +E+GIDV  +DA++
Sbjct: 707 QK---TAPHLVNLICAYRGGYAPEERRKIEREFFSGTLCGIAATNALELGIDVGHIDATL 763

Query: 563 IIIENAEHFG----LAQLHQLRGRVGRGEEIS 590
                  H G    ++ L Q  GR GR E+ S
Sbjct: 764 -------HLGFPGSISSLWQQAGRSGRREKPS 788


>gi|78043791|ref|YP_360317.1| primosomal protein N' [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995906|gb|ABB14805.1| primosomal protein N' [Carboxydothermus hydrogenoformans Z-2901]
          Length = 718

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 111/519 (21%), Positives = 201/519 (38%), Gaps = 127/519 (24%)

Query: 182 LPVLPE--WIEKDLLQ------KKSFPSIAEAFNIIHNPRK-AKDFE-WTSPARE----- 226
           L VLPE  W+  +L++      +    SI EA  +I  P K  +D E + +   E     
Sbjct: 68  LEVLPEELWLTPELVEMVKWISEYYLCSITEALTLISFPEKIYQDVEVFCTVVDETKLKE 127

Query: 227 ------RLAYDE----LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP-FSPTK 275
                 RL  DE    LL  +  L+      KK +   I    +I +K L N+P    T+
Sbjct: 128 KIKKSKRLQNDEMVISLLKDKRGLVRTTSTIKKLVKQGIL---QIREKPLPNLPPIELTE 184

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILA 334
           SQ+   + I +DM +    + +L G  GSGKT + L      +  G Q + + P IGI  
Sbjct: 185 SQKQVYQQIKRDMPKN--FVGLLHGITGSGKTEIYLKLAGDFLNHGKQVLFLLPEIGITT 242

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           Q      K + +NT +    ++       +      +  G   +++GT +     + +  
Sbjct: 243 QMVARVKKYFPENTLVYHSRLSAR----EKFTVWRELKKGSPVLVLGTRS--AAFLPFQN 296

Query: 395 LILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L L+I+DE+H          ++ V++ +    K     +LL TATP   T      G I 
Sbjct: 297 LGLIILDEEHELSYKQEETPKYHVREVVYWRAKRLGIPLLLGTATPSMETYAAVISGLIK 356

Query: 445 ISKITEKPAGRKPIKTVIIPINR---------IDEVI-----ERLK-------------- 476
              + ++   R   + +I+ + +         I  V+     ERL+              
Sbjct: 357 YYFLGKRYQNRPYPQVIIVDMFKEAKEGNTGIISSVLQKKISERLQKGEQVFLFLNRRGF 416

Query: 477 --VVLSEGKKAYWICPQIE-----EKKESNFR---------------SVVERFNSLHEHF 514
             +++      ++ CP  +      K+E NF+               +  E    L+ + 
Sbjct: 417 APMIMCRKCGYFYRCPDCDVSMTYHKEEKNFQCHYCGKKIAFTRKCPACQEISLDLYGYG 476

Query: 515 TSSI-----AIIHGRMSDIDKES---------VMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           T  +      +   ++  +D ++         ++++ KN    ++I T ++  G D  D 
Sbjct: 477 TQRVEEELKKLFPAKIFRVDYDTMRSKNSYDKILEAIKNKEADIIIGTQMLAKGFDFPDL 536

Query: 561 SIIIIENAEH-------------FGLAQLHQLRGRVGRG 586
           +++ + NA+              F L  L Q+ GR GRG
Sbjct: 537 TLVGVLNADQSLNLPDFRAGERSFNL--LTQVAGRAGRG 573


>gi|226942516|ref|YP_002797589.1| DEAD box family ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
 gi|226717443|gb|ACO76614.1| ATP-dependent RNA helicase, DEAD box family [Azotobacter vinelandii
           DJ]
          Length = 557

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 146/379 (38%), Gaps = 49/379 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q+ AI  +LQ      R L ++    G+GKT    + +   +  GG          
Sbjct: 24  PTPVQQRAIPAVLQ-----GRDL-MVAAQTGTGKTGGFALPVLERLFPGGHPDKEHRHGP 77

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAH 373
              + +++ P   LA Q ++  K Y ++ +++   I G +    + +AL R         
Sbjct: 78  RQARVLVLTPTRELAAQVHDSFKLYARDLKLVSACIFGGVGMNPQVQALSRGVDVLVACP 137

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G+   ++G     Q S+    + ++++DE  R      +   +K      +L    P  +
Sbjct: 138 GRLLDLVG-----QGSVDLSHVEILVLDEADRMLDMGFIHDVKK------VLAKLPPKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI  +T K     P +  + P N   E IE+    L  G K   +   + 
Sbjct: 187 NLLFSATFSADIVNLTNKLL-HDPERIEVTPPNTTVERIEQRVFRLPAGHKRALLAHLVT 245

Query: 494 EKKESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +        F       N L E+        A IHG  S   +   +  FK+GT ++L+A
Sbjct: 246 QGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKSGTIRILVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK----- 602
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K     
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVEEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 603 NSYTRLSVLKNTEDGFLIA 621
              TR S+ +    GF I 
Sbjct: 365 ERMTRQSIPEGDWAGFDIG 383


>gi|258620451|ref|ZP_05715489.1| Primosomal protein N' [Vibrio mimicus VM573]
 gi|258587330|gb|EEW12041.1| Primosomal protein N' [Vibrio mimicus VM573]
          Length = 734

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    S +     +L+G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 199 PKLNQEQAIA-IAAVNSHQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 258 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 312 FAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHFENIPIVLGSATPALETLHNALSG 371

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 372 KYHHLQLTQRAGNALPTRN 390


>gi|261414824|ref|YP_003248507.1| primosomal protein N' [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261371280|gb|ACX74025.1| primosomal protein N' [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 672

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 21/185 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  QE+A+  +++D+ +      +L G  GSGKT V    +  A++   + +I+ P IG+
Sbjct: 146 TGEQETALASLVEDLDKDGFRGTLLHGVTGSGKTRVYQELVREALKRNKRVLILVPEIGL 205

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
             Q       ++    ++ V ++   +    +R     +  G A +++GT +     +  
Sbjct: 206 TPQT----ASRFEDYLKVPVVVLHSALSAPQKRAGYLAVLDGSAKVVLGTRSAI---LSP 258

Query: 393 YKLILVIVDEQHRFGVQQR------------LKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           +   +VI+DE+H    +Q+              L QK  A  V+L +ATP   T      
Sbjct: 259 FDFDVVILDEEHDSSFKQQDPAPRYHTRDLAFHLAQKYGA-LVVLGSATPCLETFRNAKA 317

Query: 441 GDIDI 445
           G++ +
Sbjct: 318 GNLKL 322


>gi|225579844|gb|ACN94118.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 159/367 (43%), Gaps = 50/367 (13%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AA 316
           ++LR + F  PT  Q  AI  I   MS ++ ++ I +   GSGKTL  ++ M        
Sbjct: 523 EVLRRLGFEKPTPIQCQAIPAI---MSGRD-LIGIAK--TGSGKTLAFILPMFRHILDQP 576

Query: 317 AVEAGGQAV--IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++E G  A+  IMAP   L  Q  + I+K++++  +    + G    + +   L+R    
Sbjct: 577 SMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR---- 632

Query: 375 QAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF---GVQ-QRLKLTQKATAPH 422
            A II+ T     D +           ++  V++DE  R    G + Q +++        
Sbjct: 633 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDR 692

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
             +M +   PR +   +   +           +KPI+ ++   + + + +E+  V+L++ 
Sbjct: 693 QTVMFSATFPRQMEALARRIL-----------KKPIEVIVGGRSVVCKEVEQHVVILNDD 741

Query: 483 KKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
            K + +   +   +E+     F    E  + L      +      +HG +   D++S + 
Sbjct: 742 AKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTII 801

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR  +  S    
Sbjct: 802 DFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRC-GRTGRAGKKGSAYTF 860

Query: 596 YHPPLSK 602
             P  S+
Sbjct: 861 ITPEQSR 867


>gi|197336796|ref|YP_002158115.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
 gi|197314048|gb|ACH63497.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
          Length = 460

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 139/359 (38%), Gaps = 66/359 (18%)

Query: 302 VGSGKTLVALIAM-------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  ++ M        +  +   +AVI+AP   LA+Q Y  ++           +
Sbjct: 62  TGSGKTLAFVLPMLHKSLKTKSFSKNDPRAVILAPTRELAKQVYSHLRAMLGGLTYDATL 121

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---F 406
           ITG      +  AL +        I+ T     D +++  L L     +I+DE  R    
Sbjct: 122 ITGGENFNDQVNALRK----HPKFIVATPGRLADHLEHQSLYLDGLETLILDEADRMLDL 177

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           G  + L+   KA A H          +TL+ ++  D D      K AG           N
Sbjct: 178 GFAEHLQKIHKA-ASHRR-------RQTLMFSATLDHD---AVNKFAG-----------N 215

Query: 467 RIDEVIERLKVVLSEGK-----KAYWICPQIEEKK---------ESNF--------RSVV 504
            +D   +R+ V LS  +     + +++C  ++ K+         E  F        RS  
Sbjct: 216 MLDNP-KRISVGLSNDEHKDITQRFYLCDHLDHKQAILNKIIETEDYFQIMIFTATRSDT 274

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +R   L          + G M+   + ++M  F+    K+L+ T V   G+D+   + +I
Sbjct: 275 DRLTKLLNEENLKAVALSGDMNQTARNNIMSQFERRVHKILVTTDVASRGLDLTSVTHVI 334

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
             +        +H++ GR GR  +  + I L  P     S+ R+      +  F + EE
Sbjct: 335 NFDMPKHMEEYVHRV-GRTGRAGKKGTAISLVGPK-DWESFKRVETFLQQDLSFSVFEE 391


>gi|90410084|ref|ZP_01218101.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90329437|gb|EAS45694.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 420

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 160/376 (42%), Gaps = 47/376 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGG-QA 324
           +PT  QE AI  IL   + KN    I     G+GKT      L+   +    + A   +A
Sbjct: 23  TPTPIQEKAIPVIL---TGKNL---IAAAQTGTGKTASFVLPLLEKFSDMPPIRAKRIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q    I +Y+++  +    + G +    ++   +R+  G   I++ T  
Sbjct: 77  LILVPTRELAVQVDANITQYSKHLSLTSLAMYGGVDYKDQK---QRLIDG-VDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++ + +L ++++DE  R      ++   K       ++   P  R  +L S
Sbjct: 133 RLLDMYTQRALHFDELEVLVLDEADRMLDMGFIEDINK-------ILERLPKERQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  ++  K A  +P++  + P N     I++  + + + KK+  +   I   KE+ 
Sbjct: 186 ATLSDQVRVLAKTAVERPVEISVSPENTTTPKIDQWLITVDKDKKSALLSHMI---KENE 242

Query: 500 FRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           ++  +    + H         E        IHG  S   +E +++ FK+G   LL+AT +
Sbjct: 243 WKQALIFIQTKHGAAKLVGQLEKRGIVAEAIHGGRSQAVREKLLNDFKSGELGLLVATGI 302

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GID+ D + +I  +        +H++ GR GR       I      +S++ +  L  
Sbjct: 303 AARGIDIDDLTRVINYDLPDQADDYVHRI-GRTGRAGATGEAISF----VSRDDFRHLCA 357

Query: 611 LKNTEDGFLIAEEDLK 626
           ++ T  G LI  ++++
Sbjct: 358 IE-TRLGHLIVRKEIE 372


>gi|157863878|ref|XP_001687490.1| nucleolar RNA helicase II [Leishmania major strain Friedlin]
 gi|68223701|emb|CAJ01930.1| putative nucleolar RNA helicase II [Leishmania major strain
           Friedlin]
          Length = 674

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID--VVDASIIIIENAEHFGLAQLH 577
            +HG M    +ES M SF++    +LIAT V   G+D  +VD   ++I+ A    +    
Sbjct: 368 CLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVD---LVIQCAPPSDIDAFI 424

Query: 578 QLRGRVGRGEEISSCILLYHP 598
              GR GR      C+LLY P
Sbjct: 425 HRAGRTGRAGRKGVCVLLYQP 445


>gi|17553716|ref|NP_498514.1| hypothetical protein F57B9.3 [Caenorhabditis elegans]
 gi|532817|gb|AAA21169.1| Hypothetical protein F57B9.3 [Caenorhabditis elegans]
          Length = 363

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 134/309 (43%), Gaps = 50/309 (16%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           +Q   GSGKT+++LI +   ++      Q +++AP   +AQ+ +E +K   +N  +    
Sbjct: 38  IQSQAGSGKTVISLIDILQGIDCEDAHLQVILLAPQRGMAQRAHEQLKSLGRNLNVNATC 97

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHRFGVQ 409
           + G    A   K         +H+++GT   F      D+ +    +L   DE    G +
Sbjct: 98  L-GFDTTAENDKI--------SHVLMGTPKDFLSNIPSDTSRIKMFVLDEADEMLSKGFK 148

Query: 410 QRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
            ++    ++      V+L++AT     L +T+               R PI+ ++    +
Sbjct: 149 DQIYEVFRSMPQDVQVVLLSATMPSEVLDVTN------------RFMRDPIRILV----K 192

Query: 468 IDEV-IERLKVVLSEGKKAYW----ICPQIEEKKESN---FRSVVERFNSLHEHFTS--- 516
            DE+ +E ++      +K  W    +C  ++  +E+    F +   R   L E   S   
Sbjct: 193 KDELTLEGIRQFYINVQKDEWKFNCLCDLLKTSRETQALIFCNTRRRVTQLTEQLMSIPI 252

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            ++  HG M   ++E ++  F +   ++L+ T ++  G+++  + II   N +  G  + 
Sbjct: 253 KVSCFHGNMEHNEREDMVKDFNSRNTRVLVTTDLMARGMNIRKSLII---NYDVSGNMEN 309

Query: 577 HQLR-GRVG 584
           + LR GR G
Sbjct: 310 YMLRNGRQG 318


>gi|187957004|gb|AAI58084.1| EG434080 protein [Mus musculus]
          Length = 411

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 172/400 (43%), Gaps = 101/400 (25%)

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFS-------------------PTKSQESAIKDI 284
           RK+  KE G+   VE + ++++ R + F                    P+  Q+ AIK I
Sbjct: 14  RKRLLKEEGMT-KVEFETSEEVDRTLTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQI 72

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILA---QQHY 338
           +     K R + I Q   G+GKT    I++   ++      QA+I+AP   LA   Q+  
Sbjct: 73  I-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGL 126

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--- 395
             +  Y  N Q    I   N+ +  R+     + +GQ H++ GT     D I+   L   
Sbjct: 127 LALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRVFDMIRRRSLPTR 179

Query: 396 -----ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKI 448
                +L   DE    G ++++    +   P   V+L++AT     L +T+         
Sbjct: 180 AIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN--------- 230

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
                     K +  PI RI  +++R ++ L EG K +++     E++E  F ++ + ++
Sbjct: 231 ----------KFMTHPI-RI--LVKRDELTL-EGIKQFFVAV---EREEWKFDTLCDLYD 273

Query: 509 SL-----------------------HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +L                         +FT  ++ +HG M   ++ES+M  F++G  ++L
Sbjct: 274 TLTITQAVIFCITKRKVDWLTEKMREANFT--VSSMHGDMPQKERESIMKEFRSGASRVL 331

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 370


>gi|50291507|ref|XP_448186.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661162|sp|Q6FNK8|RRP3_CANGA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|49527497|emb|CAG61137.1| unnamed protein product [Candida glabrata]
          Length = 493

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 122/307 (39%), Gaps = 28/307 (9%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT    I +   +    Q   A ++AP   LAQQ  E          +    I G 
Sbjct: 119 TGSGKTAAFAIPILNKLWEDQQPYYACVLAPTRELAQQIKETFDSLGSLMGVRTTCIVGG 178

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK------LILVIVDEQHRFGVQQRL 412
           M    + + L R    + HIII T     D ++  K      L  +++DE  R      L
Sbjct: 179 MNMMDQARDLMR----KPHIIIATPGRLMDHLENTKGFSLKNLKFLVMDEADRL-----L 229

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEV 471
            +        +L +  T    T + ++     I K+ ++ +   P+K  +      +D +
Sbjct: 230 DMEFGPVLDRILKIIPTKGRTTYLFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTL 288

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMS 526
           ++ L VV    K  + I    E   ++       ++  ER + L      S   +HG ++
Sbjct: 289 VQTLMVVPGGLKNTFLIYLLNEFIGKTVIIFTRTKANAERLSGLCNLLEFSATALHGDLN 348

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL--RGRVG 584
              +   +D FK G   +L+AT V   G+D+    I+I  +      + +H++    R G
Sbjct: 349 QNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAG 408

Query: 585 R-GEEIS 590
           R G+ IS
Sbjct: 409 RSGKSIS 415


>gi|332297229|ref|YP_004439151.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
 gi|332180332|gb|AEE16020.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
          Length = 632

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 129/319 (40%), Gaps = 32/319 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV-EAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I +   G+GKT    + +   + E  G  +A+I+AP   LA Q  + I   T  T   + 
Sbjct: 47  IAKARTGTGKTAAFGLPLVQTIREDKGHVRALILAPTRELALQVCKEIDSLTTGTYPRLA 106

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
            + G      + +AL+R       I++GT    QD I+   L        IL   DE   
Sbjct: 107 AVYGGQSMGEQLRALKR----GVEIVVGTPGRVQDHIERKSLDLSQIDYFILDEADEMLD 162

Query: 406 FGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKT- 460
            G    ++       P   +LL +AT     L + S  +GD +I  + E+ +  +P+ T 
Sbjct: 163 MGFIDDIEAIFAKANPESRILLFSATMPQPILKIASRFMGDYEI--VEEETSPEEPVLTE 220

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWIC-PQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
               I R  + IE L  ++      Y +   Q +   +   R + ER            A
Sbjct: 221 QKYWIVRESDKIEALVRLIDISPDFYGLVFTQTKADADMITRQLDER--------GYEAA 272

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG +    +E ++  F+N   ++L+AT V   GID+   + ++       G   +H++
Sbjct: 273 ALHGDIPQAQREKILYRFRNKKTRILVATDVAARGIDIEGLTHVVNYALPFDGPTYVHRI 332

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR         L  P
Sbjct: 333 -GRTGRAGAKGLAFTLVRP 350


>gi|329920343|ref|ZP_08277075.1| putative ComF operon protein 1 [Lactobacillus iners SPIN 1401G]
 gi|328936019|gb|EGG32472.1| putative ComF operon protein 1 [Lactobacillus iners SPIN 1401G]
          Length = 429

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 140/346 (40%), Gaps = 53/346 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q     D+L  +  +N    ++    G+GKT +   A+   ++ G    +  P   +
Sbjct: 91  TDRQAKVSADLLHAL--QNNQDHLVHAVTGAGKTEMLFKAVEYFLQQGKYVALATPRLDV 148

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             + Y  + +   NT+I          + H + A +     +  II  TH L    ++YY
Sbjct: 149 VNELYPRMCRAFANTKI---------GKYHGKMAQD--PDNEPFIICTTHQL----LKYY 193

Query: 394 KLI-LVIVDEQHRFGVQQRLKL---TQKATAP--HVLLMTATPIPRTLVLTSLGDIDISK 447
           +   L+I+DE   F       L    + A  P      +TATP    L     G++  S 
Sbjct: 194 QAFDLIIIDEVDAFPYVNNPMLYYGAKNAIKPTGQTFYLTATPSKDMLTKVKNGEMGYSL 253

Query: 448 ITEKPAG------------RKPIK-TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + ++  G            RK I    + P      +I+ L  +++ GK      P+I E
Sbjct: 254 LQQRFHGGLLAVPEEYLFWRKYISGESLHPF-----LIKVLNEIINSGKLLLVFVPRIAE 308

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                    +  + ++ +   S + I     SD +++  ++ F+N    +L+ TT++E G
Sbjct: 309 ---------LGLYQTILQKKYSQLVIASVHSSDKNRQQKVEQFRNREISILLTTTILERG 359

Query: 555 IDVVDASIIIIENAEH-FGLAQLHQLRGRVGRG--EEISSCILLYH 597
           +      +I+I   +  +  A L Q+ GRVGR   +++   I  YH
Sbjct: 360 VTFPGVQVIVIAADDAIYTTAGLVQIAGRVGRAATDQVGRVIFCYH 405


>gi|323455397|gb|EGB11265.1| hypothetical protein AURANDRAFT_1175 [Aureococcus anophagefferens]
          Length = 433

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 12/84 (14%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----- 575
           IHG  S   +E+ ++SFK G C +L+AT V   G+DV D + ++      F L Q     
Sbjct: 327 IHGDRSQSQREAALESFKQGRCDVLVATDVAARGLDVNDVAHVV-----QFDLPQDDFDT 381

Query: 576 -LHQLRGRVGRGEEISSCILLYHP 598
            +H++ GR GR  +       + P
Sbjct: 382 YVHRI-GRTGRAGKTGVATAFFVP 404


>gi|322388306|ref|ZP_08061910.1| primosome assembly protein PriA [Streptococcus infantis ATCC
           700779]
 gi|321140978|gb|EFX36479.1| primosome assembly protein PriA [Streptococcus infantis ATCC
           700779]
          Length = 796

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++ +     V I+
Sbjct: 283 LLQGITGSGKTEVYLQIIQGALDMGKTAIVLVPEISLTPQMTERFIARFGEQ----VAIL 338

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q
Sbjct: 339 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVIIIDEEHEASYKQ 391


>gi|228994170|ref|ZP_04154070.1| ATP-dependent RNA helicase dbpA [Bacillus pseudomycoides DSM 12442]
 gi|228765622|gb|EEM14276.1| ATP-dependent RNA helicase dbpA [Bacillus pseudomycoides DSM 12442]
          Length = 481

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 130/325 (40%), Gaps = 44/325 (13%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+I+ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALILTPTRELAAQVKEDITNIGRFKRIKAT 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+       +L  +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             F  Q    + +  T    +L +AT +P  +        ++S    K      IK   I
Sbjct: 161 MGFIDQVEAIIDELPTDRMTMLFSAT-LPEDVE-------NLSHTYMKSPTHIEIKASGI 212

Query: 464 PINRIDEVIERLK----------VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             ++I+ ++  ++          +   E   +  I  + +E  +  FR +        + 
Sbjct: 213 TTDKIEHILLEVREEEKFSLLQDITTLENPDSCIIFCRTQENVDHVFRQLKRSGYPCDK- 271

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  IHG M   D+ +VM+ FK G  + L+AT V   GID+ + + +I  +      
Sbjct: 272 -------IHGGMIQEDRFAVMNDFKRGKFRYLVATDVAARGIDIENITHVINYDIPLEKE 324

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
           + +H+  GR GR       I    P
Sbjct: 325 SYVHRT-GRTGRAGNSGKAITFVTP 348


>gi|229017793|ref|ZP_04174677.1| ATP-dependent RNA helicase [Bacillus cereus AH1273]
 gi|229024016|ref|ZP_04180493.1| ATP-dependent RNA helicase [Bacillus cereus AH1272]
 gi|228737285|gb|EEL87803.1| ATP-dependent RNA helicase [Bacillus cereus AH1272]
 gi|228743484|gb|EEL93600.1| ATP-dependent RNA helicase [Bacillus cereus AH1273]
          Length = 450

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPASKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNFDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|146096170|ref|XP_001467723.1| ATP-dependent RNA helicase [Leishmania infantum JPCM5]
 gi|134072089|emb|CAM70788.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
 gi|322501693|emb|CBZ36774.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 614

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 143/332 (43%), Gaps = 54/332 (16%)

Query: 302 VGSGKTLVALI-------------AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
            GSGKT   LI             A     ++   A++++P   L+ Q YE  +K+T  T
Sbjct: 179 TGSGKTAAYLIPAINFMLVNNLNRAKPTNSQSAPSALVLSPTRELSIQIYEEGRKFTYRT 238

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQ 403
            I   ++ G     H+   L R       +++ T     D       +Y  +  +++DE 
Sbjct: 239 GIRCVVVYGGADPRHQIHELTR----GCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEA 294

Query: 404 HRF---GVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEK------ 451
            R    G + +++   +         +  P P   +TL+ ++    +I ++  +      
Sbjct: 295 DRMLDMGFEPQIRAIVQGPD------SDMPPPGERQTLLYSATFPKEIQQMAREFLYHHH 348

Query: 452 --PAGR--KPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
               GR     + +   +  ++++ +R  L  VL E  +   +   +E+K+++++   +E
Sbjct: 349 FLQVGRVGSTTENITQDVRWVEDMDKRGCLLEVLKE-HQGERVLVFVEKKRDADY---LE 404

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           R+        SSI   HG     ++E  +D FK+G C++L+AT V   G+D+ + ++++ 
Sbjct: 405 RYLRQSRIPCSSI---HGDRVQREREEALDIFKSGVCRVLVATDVASRGLDIPNVAVVVQ 461

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +        +H++ GR GR  +  + I  ++
Sbjct: 462 YDLPSNIDDYVHRI-GRTGRAGKRGTAISFFN 492


>gi|125718647|ref|YP_001035780.1| primosome assembly protein PriA [Streptococcus sanguinis SK36]
 gi|125498564|gb|ABN45230.1| Primosomal protein N', putative [Streptococcus sanguinis SK36]
          Length = 795

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 19/187 (10%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I Q + Q +    +L+G  GSGKT V L  +A A+  G  A+++ P I +  Q
Sbjct: 262 QAAAVAAITQKIGQSHSQPVLLEGVTGSGKTEVYLQVIAEALAQGKTAIMLVPEISLTPQ 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               FI ++       V I+   +    +     ++  G A +++G   A+F        
Sbjct: 322 VTDRFISRFGDQ----VAILHSGLSDGEKYDEWRKVERGAAQVVVGARSAIF---APLTN 374

Query: 395 LILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +  +I+DE+H          R+  ++   L  +     ++L +ATP   +    S G  D
Sbjct: 375 IGAIIIDEEHESSYKQDSNPRYHAREVALLRAQYNQAVLVLGSATPSLESRARASRGVYD 434

Query: 445 ISKITEK 451
              ++++
Sbjct: 435 FQLLSKR 441


>gi|74693028|sp|Q754U8|PRP5_ASHGO RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
          Length = 816

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 142/351 (40%), Gaps = 72/351 (20%)

Query: 302 VGSGKTLVALIAMAAAVEA----GGQ-----AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            GSGKT+  ++ +   ++A    GG       +I++P   LA Q +E + K+T     I 
Sbjct: 283 TGSGKTVSFILPLLRQIKAQRPLGGDETGPLGLILSPTRELALQIHEEVTKFTSGDPSIR 342

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS--------IQYYKLILVIVDEQH 404
            +      +  R+  +  I  G   I+I T   F D         I   +++ V++DE  
Sbjct: 343 SLCCTGGSELKRQ--INDIKRG-VEIVIATPGRFIDLLSLNSGNLINPKRIVFVVMDEAD 399

Query: 405 RF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           R    G + ++    K   P    +L +AT  P  L   +      SKI   P       
Sbjct: 400 RLFDLGFEPQVNQIMKCIRPDKQCVLFSAT-FPNKLKSFA------SKILHDP------- 445

Query: 460 TVIIPINR---IDEVIERLKVVLSEGKKAY-----WIC---PQIEEKKESNFRSVVE--- 505
            V I +N    I+E IE+   + S  +  +     W+      + ++K   F S  +   
Sbjct: 446 -VYITVNSKSLINENIEQKVEIFSNEEDKFKSLIHWLALTQQNLNDEKTIVFVSSQQICD 504

Query: 506 -RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             +N L  +  ++ AI  G++   ++   +  FK     +LI T V+  G++V + S++I
Sbjct: 505 ILYNRLEANGFTTFAIHAGKIY-TERAWNLKCFKETANGILICTEVLSRGLNVPEVSLVI 563

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           I NA     AQ     GR  RG                N  T L++L NTE
Sbjct: 564 IYNAAKT-FAQYVHTTGRTARG---------------SNKGTALTLLMNTE 598


>gi|326534222|dbj|BAJ89461.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 126/314 (40%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 82  IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 141

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 142 ACVGGTSV----REDQRILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMF--VLDEADEM 195

Query: 404 HRFGVQQRL-KLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++  + Q       V + +AT  P  L +T        K   KP        V
Sbjct: 196 LSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITR-------KFMNKP--------V 240

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 241 RILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKM 300

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 301 RGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 360

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 361 PENYLHRI-GRSGR 373


>gi|324991977|gb|EGC23899.1| primosome assembly protein PriA [Streptococcus sanguinis SK405]
          Length = 795

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I Q + Q +    +L+G  GSGKT V L  +A A+  G  A+++ P I +  Q
Sbjct: 262 QAAAVAAITQKIGQSHSQPVLLEGVTGSGKTEVYLQVIAEALAQGKTAIMLVPEISLTPQ 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               FI ++       V I+   +    +     ++  G A +++G   A+F        
Sbjct: 322 VTDRFISRFGDQ----VAILHSGLSDGEKYDEWRKVERGAAQVVVGARSAIF---APLTN 374

Query: 395 LILVIVDEQHRFGVQQ 410
           +  +I+DE+H    +Q
Sbjct: 375 IGAIIIDEEHESSYKQ 390


>gi|323497181|ref|ZP_08102201.1| ATP-dependent RNA helicase DbpA [Vibrio sinaloensis DSM 21326]
 gi|323317756|gb|EGA70747.1| ATP-dependent RNA helicase DbpA [Vibrio sinaloensis DSM 21326]
          Length = 458

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 135/309 (43%), Gaps = 37/309 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I QG  GSGKT    + + + +       Q++++ P   LA Q  + I+   +    I V
Sbjct: 44  IGQGKTGSGKTATFSLGVLSNLNVKRFRVQSLVLCPTRELADQVAKEIRTLARGIHNIKV 103

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF- 406
             + G MP   +  +LE   HG AHI++GT       L +  I   +L  +++DE  R  
Sbjct: 104 LTLCGGMPMGPQIGSLE---HG-AHILVGTPGRILDHLSKGRINLDELNTLVLDEADRML 159

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIK 459
             G +  +   ++   T    LL +AT  P   +TL    + + ++ K+ E       I+
Sbjct: 160 DMGFEDAIDAIISAAPTQRQSLLFSAT-FPANIKTLAEKVMSEPEMVKV-ESTHETTTIE 217

Query: 460 TVIIPINRIDEVIERLKVVL--SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
                +   +E    L+ +L   + + +   C     KKE   ++V +  N  H  F  S
Sbjct: 218 QRFYALEGSEEKDNALETLLLVHKPESSVVFC---NTKKE--VQNVTDELN--HRGF--S 268

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +  +HG M   ++E  +  F N +  +L+AT V   G+DV +   +   N E     ++H
Sbjct: 269 VVELHGDMEQREREQALTMFANKSVSILVATDVAARGLDVDNLDAVF--NFELSRDPEVH 326

Query: 578 QLR-GRVGR 585
             R GR GR
Sbjct: 327 VHRIGRTGR 335


>gi|320589959|gb|EFX02415.1| eukaryotic initiation factor 4a-12 [Grosmannia clavigera kw1407]
          Length = 403

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 142/329 (43%), Gaps = 77/329 (23%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+M   +       QA++++P   LA Q    +K       +   
Sbjct: 70  IAQAQSGTGKTATFSISMLQVINTASRETQALVLSPTRELATQIQSVVKALGDYMNVQCH 129

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRF-- 406
              G     +  + + ++  GQ HI+ GT     D I+   L      ++++DE      
Sbjct: 130 ACIGG---TNVGEDIRKLDQGQ-HIVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLN 185

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G ++++    +   P   V++++AT +P+          D+ ++T K     P++ ++ 
Sbjct: 186 QGFREQIYEVYRYLPPATQVVVVSAT-LPQ----------DVLEMTYKFMT-DPVRILV- 232

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL------------- 510
                    +R ++ L EG K Y+I     EK+E  F ++ + +++L             
Sbjct: 233 ---------KRDELTL-EGLKQYFIAV---EKEEWKFDTLCDLYDTLTITQAVIFCNTRR 279

Query: 511 ----------HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
                       +FT  ++ +HG M   +++S+M  F+    ++LI+T V   GIDV   
Sbjct: 280 KVDWLTDKMRESNFT--VSSMHGDMPQKERDSIMQDFRQFNTRVLISTDVWARGIDVQQV 337

Query: 561 SIIII----ENAEHFGLAQLHQLRGRVGR 585
           S++I      N E++    +H++ GR GR
Sbjct: 338 SLVINYDLPSNRENY----IHRI-GRSGR 361


>gi|288803318|ref|ZP_06408751.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
 gi|288334138|gb|EFC72580.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
          Length = 553

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 152/352 (43%), Gaps = 54/352 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL+       +L + Q   G+GKT   L+ + + +  GG        VIM
Sbjct: 7   TPVQEKCIPEILKGHD----VLGVAQ--TGTGKTAAYLLPVLSKLADGGYPESAINCVIM 60

Query: 328 APIGILAQQHYEFIK--KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +P   LAQQ  + ++   Y  N    V +  GN    + ++ L+ +A G A ++I T   
Sbjct: 61  SPTRELAQQIDQGMQGFAYYLNGVSCVAVYGGNDGNRYDQE-LKSLALG-ADVVIATPGR 118

Query: 386 F-----QDSIQYYKLILVIVDEQHRF---GVQQR-LKLTQKATAPHVLLMTATPIPRTLV 436
           F       ++   K+   I+DE  R    G     + + +K  A    +M +  +P    
Sbjct: 119 FISHISLGNVDLSKVSFFILDEADRMLDMGFSDDIMTIAKKLPATCQTIMFSATMP---- 174

Query: 437 LTSLGDIDISKITE--KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
                    +KI E  K   + P++ + + +++  E I++   V  E +K   I      
Sbjct: 175 ---------AKIEELAKTLLKNPVE-IKLAVSKPAEKIQQTAYVCYETQKMGIIKDIF-- 222

Query: 495 KKESNFRSVVERFNSLHE--HFTSSIAIIH---GRM-SDIDKE---SVMDSFKNGTCKLL 545
            K  + + V+    S  +      S+  +H   G M SD+D+E    VM  FK+G   +L
Sbjct: 223 -KAGDLKRVIIFSGSKQKVKQIAGSLNRMHINCGEMHSDLDQEQRNDVMFKFKSGQIDVL 281

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +AT ++  GID+ D +++I  +  H     +H++ GR  R +     I   +
Sbjct: 282 VATDIVSRGIDIDDIAMVINYDVPHDAEDYVHRI-GRTARADRDGKAITFVN 332


>gi|229069971|ref|ZP_04203249.1| ATP-dependent RNA helicase [Bacillus cereus F65185]
 gi|228713171|gb|EEL65068.1| ATP-dependent RNA helicase [Bacillus cereus F65185]
          Length = 458

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   +++     QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDSESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKLRVSKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNFDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|229136279|ref|ZP_04265026.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST196]
 gi|228647151|gb|EEL03239.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST196]
          Length = 481

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 130/324 (40%), Gaps = 42/324 (12%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI--VDEQHR 405
            + G  P A ++  L++    + HI++GT     D I+   L       LVI   DE   
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLDCLKYLVIDEADEMLN 160

Query: 406 FG-VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            G + Q   +  +     + ++ +  +P+ +   S   +D     E       IK   I 
Sbjct: 161 MGFIDQVEAIIDELPKKRMTMLFSATLPKDVEKLSRTYMDSPTHIE-------IKATGIT 213

Query: 465 INRIDEVIERLK----------VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            ++I+  +  ++          V   E   +  I  + +E  +  F+ + +R N   +  
Sbjct: 214 TDKIEHTLFEMREEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVFQQL-KRVNYPCDK- 271

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      +
Sbjct: 272 ------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKES 325

Query: 575 QLHQLRGRVGRGEEISSCILLYHP 598
            +H+  GR GR       I    P
Sbjct: 326 YVHRT-GRTGRAGNNGKAITFMTP 348


>gi|156837514|ref|XP_001642781.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160358661|sp|A7TS37|RRP3_VANPO RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|156113348|gb|EDO14923.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 506

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 120/309 (38%), Gaps = 26/309 (8%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT    I +   +    Q   A I+AP   LAQQ  E          +    I G 
Sbjct: 132 TGSGKTAAFAIPILNRLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSACIVGG 191

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHRFGVQQRL 412
           M    + + L R    + HIII T     D ++        KL  +++DE  R      L
Sbjct: 192 MNMMDQARDLMR----KPHIIIATPGRLMDHLENTRGFSLRKLKFLVMDEADRL-----L 242

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEV 471
            +        +L +  T    T + ++     I K+ ++ +   P+K  +      +D +
Sbjct: 243 DMEFGPVLDRILKIIPTQGRTTYLFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTL 301

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMS 526
           ++ L VV    K  Y I    E   ++       ++  ER  +L      S   +HG ++
Sbjct: 302 VQTLIVVPGGLKNTYLIYLMNEFIGKTIIVFTRTKANAERITTLANLLEFSATALHGDLN 361

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              +   +D FK G   +L+AT V   G+D+    I+I  +      + +H++ GR  R 
Sbjct: 362 QNQRTGSLDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRV-GRTARA 420

Query: 587 EEISSCILL 595
                 I L
Sbjct: 421 GRSGKSISL 429


>gi|254228728|ref|ZP_04922151.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262396550|ref|YP_003288403.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151938675|gb|EDN57510.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262340144|gb|ACY53938.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 443

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 149/367 (40%), Gaps = 67/367 (18%)

Query: 302 VGSGKTLVALIAM-------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  ++ M        +      +AVI+AP   LA+Q Y  ++           +
Sbjct: 47  TGSGKTLAFVLPMLHKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAAL 106

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---F 406
           I G      + KAL R        I+ T     D +++  L L     +I+DE  R    
Sbjct: 107 ILGGENFNDQVKALRRYPK----FIVATPGRLADHLEHRSLYLEGLETLILDEADRMLDL 162

Query: 407 GVQQRLKLTQKATAPH----VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           G    L+   KA A H     L+ +AT     L    + DI  +++   P      K + 
Sbjct: 163 GFAPELRRIHKA-AKHRRRQTLMFSAT-----LDHADVNDI-AAEMLNSP------KRIA 209

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--------ESNFRSVV---------E 505
           I ++      E  K +  +    +++C  ++ K+        E+ +R V+         E
Sbjct: 210 IGVSN-----EEHKDITQK----FYLCDHLDHKEAILDRVLSEAEYRQVIIFTATRDDTE 260

Query: 506 RFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           R  + L+E    ++A+  G ++   + ++M  F+    K+L+ T V   G+D+   + +I
Sbjct: 261 RLTAKLNEKKLKAVAL-SGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIATVTHVI 319

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
             +        +H++ GR GR       I L  P    +S+ R+      +  F +  ED
Sbjct: 320 NFDMPKHTEEYVHRV-GRTGRAGNKGDAISLVGPK-DWDSFKRVEAYLQQDLEFSVF-ED 376

Query: 625 LKQRKEG 631
           LK + +G
Sbjct: 377 LKGKFKG 383


>gi|134094897|ref|YP_001099972.1| ATP-dependent RNA helicase DbpA [Herminiimonas arsenicoxydans]
          Length = 506

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 133/323 (41%), Gaps = 40/323 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQ---HYEFIKKYTQNTQI 350
           I Q   GSGKT    I M   +       Q +++ P   LA Q       + ++  N +I
Sbjct: 87  IAQAKTGSGKTAAFGIGMLQKLNPTWFAIQGLVICPTRELADQVSNELRRLARFADNIKI 146

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +   + G  P    R  +  + HG AHI++GT    +D I    + L     +++DE  R
Sbjct: 147 LT--LCGGAPM---RPQIASLEHG-AHIVVGTPGRLRDHISRNTINLSTVQTLVLDEADR 200

Query: 406 F---GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTV 461
               G  + +            +++A P  R TL+ ++    DI K + +   R P++  
Sbjct: 201 MVDMGFYEEI----------AGIVSACPERRQTLLFSATYPDDIRKASAEFL-RDPVEVK 249

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS------LHEHFT 515
           +   +   ++ +R   V  + + A         +  S       + +       L     
Sbjct: 250 VEAQHDDSQIEQRFYEVGYDDRNAAVATLLKHYRPVSTLAFCNTKIHCRELAAELRAQGF 309

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           S++A+ +G +   +++ ++  F N +C +L+AT V   G+D+     +I  +        
Sbjct: 310 SALAL-YGELEQRERDEILVLFANQSCSVLVATDVAARGLDIQSLGAVINVDVSKDTEVH 368

Query: 576 LHQLRGRVGRGEEISSCILLYHP 598
           +H++ GR GRG++    + L  P
Sbjct: 369 IHRI-GRTGRGQDKGLALSLCAP 390


>gi|126727015|ref|ZP_01742853.1| DEAD/DEAH box helicase-like protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126703687|gb|EBA02782.1| DEAD/DEAH box helicase-like protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 700

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 140/337 (41%), Gaps = 48/337 (14%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQ--------A 324
           T+ QE+  K  L D         ++    GSGKT+   +A+ +++ E  G         A
Sbjct: 18  TQVQEAVTKPELADADL------LVSAQTGSGKTVGFGLAIGSSILEDDGSFAQADKPLA 71

Query: 325 VIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++AP   LA Q   E    Y +    +V  + G M     R+AL R     AHI++ T 
Sbjct: 72  LVIAPTRELALQVKRELDWLYGKTGAKVVSCV-GGMDMRDERRALAR----GAHIVVATP 126

Query: 384 ALFQD-----SIQYYKLILVIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPIPR 433
              +D     S+   +L  V++DE       G ++ L+  L +       L+ +AT +P+
Sbjct: 127 GRLRDHIMRNSMNMTELRAVVLDEADEMLDLGFREDLEFILGEAPEERRTLMFSAT-VPK 185

Query: 434 TLV-LTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            +  L      D  ++T     ++      + +++    ++  I  + +   E   A   
Sbjct: 186 QIARLAQSYQNDAVRVTTVAESKQHSDIEYRAMVVSARDVENAIVNV-LRYYEAPNALVF 244

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C         N R++V R  +   +   S+  + G ++  ++   + + ++G  ++ IAT
Sbjct: 245 C---------NTRAMVNRLTTRFSNRGFSVVALSGELTQNERTHALQAMRDGRARICIAT 295

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            V   GID+    ++I  +        LH+  GR GR
Sbjct: 296 DVAARGIDLPGLELVIHGDLPTNSETLLHR-SGRTGR 331


>gi|30021956|ref|NP_833587.1| primosome assembly protein PriA [Bacillus cereus ATCC 14579]
 gi|29897512|gb|AAP10788.1| Primosomal protein N' [Bacillus cereus ATCC 14579]
          Length = 801

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA ++ G +A+++ P
Sbjct: 262 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLKKGKEAIVLVP 321

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 322 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 377

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 378 P---FENLGIIIIDEEHESSYKQ 397


>gi|84687759|ref|ZP_01015631.1| Possible DNA helicase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664260|gb|EAQ10752.1| Possible DNA helicase [Rhodobacterales bacterium HTCC2654]
          Length = 1569

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 67/328 (20%), Positives = 141/328 (42%), Gaps = 50/328 (15%)

Query: 302 VGSGKTLVALI-AMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            G+GK++   I A++   + G   V+++P + ++A Q    ++    +   I  +++  +
Sbjct: 188 TGTGKSICYQIPALSRFDKTGALTVVISPLVALMADQVQGLVRAGISSAVTINGLLS--L 245

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQH---RFG---- 407
           P+  R+ AL+++  G A I++ +    + +     +   ++ L ++DE H   ++G    
Sbjct: 246 PE--RQDALDKVRMGDAAILLISPEQLRSTTVRSVLAQREVGLWVLDEAHCVSKWGHDFR 303

Query: 408 -----VQQRLKLTQKATAPHVLLMTATPIP------RTLVLTSLGDIDISKIT--EKPAG 454
                V + +K +       VL +TAT  P      R+     LG    +++T  +  A 
Sbjct: 304 PDYRYVSRFIKESSGDDPAPVLCLTATAKPDVVQDIRSHFQERLG----AELTLLDGGAS 359

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLS----EGKKAYWI-CPQIEEKKESNFRSVVERFNS 509
           R  +   ++P  R  ++ + L  + +    EG     + C           RS  ER   
Sbjct: 360 RSNLSFQVLPTQRSTKLTDILDAIEAGLPREGASGAVVYCAT---------RSATERVAE 410

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
             +    +    H  +S  DK  + + F+ G  +++ AT    +G+D  D  +++  +  
Sbjct: 411 FLKQQGIAAERYHAGLSADDKREIQEDFRVGNLRVIAATNAFGMGVDKPDIRLVVHGDVP 470

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYH 597
              L    Q  GR GR  + + C+LL++
Sbjct: 471 G-SLENYMQEAGRAGRDRDPAQCVLLFN 497


>gi|326479821|gb|EGE03831.1| ATP-dependent RNA helicase DBP2 [Trichophyton equinum CBS 127.97]
          Length = 536

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 72/346 (20%), Positives = 144/346 (41%), Gaps = 51/346 (14%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL   +     + A        G   +++AP   LA Q    I K+ ++++I  
Sbjct: 165 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRN 224

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR-- 405
             + G +P+  + + L R       + I T     D ++       ++  +++DE  R  
Sbjct: 225 TCVYGGVPRGPQIRDLTR----GVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRML 280

Query: 406 ---FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KIT 449
              F  Q R  ++Q           AT P  +   A    +  +   +G   +S   +IT
Sbjct: 281 DMGFEPQIRKIISQIRPDRQTCMWSATWPKDVRQLANDFLQDYIQVYIGSQALSANHRIT 340

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +       I  V+    + D +I+ L+ ++ + K    I    +   +      + RF  
Sbjct: 341 Q-------IVEVVSEFEKRDRMIKHLERIMEDKKSKVLIFTGTKRVADD-----ITRF-- 386

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +    +++I HG     +++ V++ FK G   +++AT V   GIDV D + ++  +  
Sbjct: 387 LRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNHDYP 445

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +     +H++ GR GR     + I L+    +K +   + +L  ++
Sbjct: 446 NNSEDYVHRI-GRTGRAGANGTAITLFTTENAKQARDLVKILTESK 490


>gi|283953960|ref|ZP_06371489.1| LOW QUALITY PROTEIN: putative primosomal protein N' [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794565|gb|EFC33305.1| LOW QUALITY PROTEIN: putative primosomal protein N' [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 617

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 15/139 (10%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQ--------GDVGSGKTLVALIAMAAAVEAGGQAVI 326
           + Q+ + KD  +   Q+   L  LQ         D GSGKT + +  +   +E G QA++
Sbjct: 104 ECQKMSFKDTPKLSDQQQSALSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQALL 163

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-AL 385
           + P   L  Q  + ++ Y ++   +       + +  R++ LER   G+  ++ G   AL
Sbjct: 164 LMPEIALTPQMQKRLEVYFKDNFFLWH---SKISKKKRQEYLERFCKGEVLLVAGARSAL 220

Query: 386 FQDSIQYYKLILVIVDEQH 404
           F   + +  L L++VDE+H
Sbjct: 221 F---LPFRNLGLIVVDEEH 236


>gi|254294583|ref|YP_003060606.1| primosome assembly protein PriA [Hirschia baltica ATCC 49814]
 gi|254043114|gb|ACT59909.1| primosomal protein N' [Hirschia baltica ATCC 49814]
          Length = 740

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 111/285 (38%), Gaps = 44/285 (15%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQAVIMA 328
           F  T  Q++    + + +  K     +L G  GSGKT V   A+A A+  E   Q +++ 
Sbjct: 201 FDLTDEQQAGADALCEAVRSKEFKPILLDGVTGSGKTEVYFEAIAEALRTEPDAQILVLL 260

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
           P   L Q   E   ++             N  Q  RR+    +  G+A I++G   ALF 
Sbjct: 261 PEIALTQAVRE---RFENRFGAAPAEWHSNATQKERRRVWREVGAGRAQIVVGARSALF- 316

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------TAPHVLLMTATPIPRTLVL 437
             + +  L L+IVDE+H    +Q      +            +  V+L +ATP   TL  
Sbjct: 317 --LPFQNLRLIIVDEEHDGSYKQDEGAVYQGRDLSVMRAHLGSATVVLASATPSLETLAN 374

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK-----KAYWICPQI 492
              G     K+  +P         ++P           +++L++ K     K  W+ P +
Sbjct: 375 AYQGRYQHIKLLARPG------AAVLP-----------EILLADMKENPPAKDCWLSPLL 417

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHG---RMSDIDKESVM 534
            +  E N  +  +    L+    + + I  G   R+   D ES +
Sbjct: 418 VDALEQNLDAGEQSLLYLNRRGYAPLVICKGCGERLKAPDTESWL 462


>gi|170053024|ref|XP_001862487.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
 gi|167873709|gb|EDS37092.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
          Length = 935

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG  S  +++ V+  F++G   +L+AT V   G+DV D   +I  +  +     +H++ 
Sbjct: 532 IHGDKSQSERDYVLQDFRHGKSTILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRI- 590

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           GR GR     +    + P   + +   LSVL+
Sbjct: 591 GRTGRCSSFGTAYTFFTPGNGRQARELLSVLE 622


>gi|159045255|ref|YP_001534049.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12]
 gi|157913015|gb|ABV94448.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12]
          Length = 434

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 151/371 (40%), Gaps = 64/371 (17%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV-ALI 312
           P  V G  AQ I       PT  Q  AI   L        +L I Q   G+GKT    L 
Sbjct: 6   PRLVAGLAAQNIT-----DPTPIQTRAIPHGLNGRD----VLGIAQ--TGTGKTAAFGLP 54

Query: 313 AMAAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
            + A ++AG +        +I+AP   L  Q  E ++ +T+ + + +++I G +    + 
Sbjct: 55  LLDALMKAGTKPAPRTCRGLILAPTRELVSQICESLRAFTEGSHLKLQVIVGGVAIGPQI 114

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKL----TQ 416
           K  ER     A +I+ T     D +    L L     +++DE       Q L L      
Sbjct: 115 KRAER----GADLIVATPGRLIDLLDRKALRLSETRFLVLDE-----ADQMLDLGFIHAL 165

Query: 417 KATAP------HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +  AP        +L +AT +P+      + ++  + +T+      P +  + P  +I +
Sbjct: 166 RKIAPLLPAERQTMLFSAT-MPK-----QMEELSRAYLTD------PARVEVAPPGKIAD 213

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGR 524
            I +    + +G K   +   +   ++      S  +   +R      +     A IHG 
Sbjct: 214 KITQSVHFVEQGAKTQLLIDLLGNHRDELALVFSRTKHGADRLARKLSNAGFETAAIHGN 273

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL--RGR 582
            S   +E  + +F+ GT K+L+AT V   GID+ D   +   +  +     +H++    R
Sbjct: 274 RSQGQRERALKAFREGTLKVLVATDVAARGIDIPDVRFVYNFDLPNVPENFVHRIGRTAR 333

Query: 583 VGR-GEEISSC 592
            GR G+ ++ C
Sbjct: 334 AGRDGQAVAFC 344


>gi|57651588|ref|YP_185687.1| comf operon protein 1, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87162312|ref|YP_493437.1| putative comf operon protein 1 [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|151220931|ref|YP_001331753.1| hypothetical protein NWMN_0719 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509018|ref|YP_001574677.1| superfamily II DNA/RNA helicase ComFA [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141232|ref|ZP_03565725.1| superfamily II DNA/RNA helicase ComFA [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253731378|ref|ZP_04865543.1| superfamily II DNA/RNA helicase ComFA [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253732802|ref|ZP_04866967.1| superfamily II DNA/RNA helicase ComFA [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|282922047|ref|ZP_06329744.1| II DNA/RNA helicase ComFA [Staphylococcus aureus A9765]
 gi|294850537|ref|ZP_06791265.1| competence protein ComFA [Staphylococcus aureus A9754]
 gi|304381629|ref|ZP_07364279.1| helicase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57285774|gb|AAW37868.1| comf operon protein 1, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87128286|gb|ABD22800.1| putative comf operon protein 1 [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|150373731|dbj|BAF66991.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160367827|gb|ABX28798.1| possible superfamily II DNA/RNA helicase ComFA [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253724903|gb|EES93632.1| superfamily II DNA/RNA helicase ComFA [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253729167|gb|EES97896.1| superfamily II DNA/RNA helicase ComFA [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|269940327|emb|CBI48704.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
 gi|282593705|gb|EFB98697.1| II DNA/RNA helicase ComFA [Staphylococcus aureus A9765]
 gi|294822616|gb|EFG39057.1| competence protein ComFA [Staphylococcus aureus A9754]
 gi|302750647|gb|ADL64824.1| superfamily II DNA/RNA helicase ComFA [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304339992|gb|EFM05936.1| helicase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315196425|gb|EFU26776.1| possible superfamily II DNA/RNA helicase ComFA [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320139915|gb|EFW31776.1| type III restriction enzyme, res subunit [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|329723819|gb|EGG60347.1| putative ComF operon protein 1 [Staphylococcus aureus subsp. aureus
           21189]
          Length = 360

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 156/359 (43%), Gaps = 66/359 (18%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++ F  ++ Q  A + I++ + ++  +L  L    G+GKT +    +  A   G    I+
Sbjct: 22  HLSFELSEQQSYASEHIVRAIRKRQTIL--LYAVTGAGKTEMMFQGIQYARIQGDNIAIV 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA------HIIIG 381
           +P                    ++VEI +  +  A   + ++ I H Q+      H ++ 
Sbjct: 80  SP-----------------RVDVVVEI-SKRIKDAFLNEDID-ILHQQSRQQFEGHFVVC 120

Query: 382 T-HALFQDSIQYYKLILVIVDEQHRF------GVQQRLKLTQKATAPHVLLMTATPIPRT 434
           T H L++   Q++  I +  DE   F       +QQ LK + K      + MTATP P+ 
Sbjct: 121 TVHQLYRFK-QHFDTIFI--DEVDAFPLSMDKNLQQALKSSSKVEHA-TIYMTATP-PKQ 175

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L    L +I    I + PA R   K++ +P  R  ++           KK   +  +I +
Sbjct: 176 L----LSEIPHENIIKLPA-RFHKKSLPVPKYRYFKL---------NNKKIQKMLYRILQ 221

Query: 495 KKESNFRSVVERFN---------SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            + +N R  +  FN         S+++   + +  +H    D+ +   ++  +NG   ++
Sbjct: 222 DQINNQRYTLVFFNNIETMIKTFSVYKQKITKLTYVHS--EDVFRFEKVEQLRNGHFDVI 279

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI-SSCILLYHPPLSKN 603
             TT++E G  + +  +++I+ A  +    L Q+ GRVGR  E  +  +L +H  +S N
Sbjct: 280 FTTTILERGFTMANLDVVVID-AHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMN 337


>gi|115473749|ref|NP_001060473.1| Os07g0647900 [Oryza sativa Japonica Group]
 gi|143456709|sp|Q5K5B6|RH57_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 57
 gi|22093706|dbj|BAC07000.1| putative ATP-dependent RNA helicase [Oryza sativa Japonica Group]
 gi|23495827|dbj|BAC20037.1| putative ATP-dependent RNA helicase [Oryza sativa Japonica Group]
 gi|113612009|dbj|BAF22387.1| Os07g0647900 [Oryza sativa Japonica Group]
 gi|125601315|gb|EAZ40891.1| hypothetical protein OsJ_25369 [Oryza sativa Japonica Group]
          Length = 540

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 135/313 (43%), Gaps = 41/313 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            GSGKTL  L  +   ++ G     +AVI+ P   LA Q     KK  +  +  ++++T 
Sbjct: 192 TGSGKTLAFLFPILMKIKPGSKEGVKAVILCPTRELAAQTTRECKKLAKGRKFYIKLMTK 251

Query: 358 NMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHR---FGVQ 409
           ++ ++   K +         I+I T     HA+ +  +   ++  +++DE  +    G  
Sbjct: 252 DLSKSGNFKDM------HCDILISTPLRLDHAVQKRDLDLSRVEYLVLDESDKLFELGFV 305

Query: 410 QRLKLTQKATA-PHVL--LMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           + +    KA + P ++  L +AT +P    TL  T + D  +  I     GRK   + +I
Sbjct: 306 EVIDSVVKACSNPSIIRSLFSAT-LPDSIETLARTIMHDA-VRVIV----GRKNSASSLI 359

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAI 520
               I    E+ K++      A  + P +       F    ER   L++          +
Sbjct: 360 KQKLIFAGTEKGKLLALRQSFAESLNPPV-----LIFVQSKERAKELYKELAFDDVRADV 414

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL- 579
           IH  + +  ++  +D+ + G   +LIAT VI  G+D    + +I  +      A +H++ 
Sbjct: 415 IHADLDEEQRQDAVDNLRAGKTWVLIATEVIARGMDFKGVNCVINYDFPESASAYIHRIG 474

Query: 580 -RGRVGR-GEEIS 590
             GR GR GE I+
Sbjct: 475 RSGRAGRSGEAIT 487


>gi|327314674|ref|YP_004330111.1| putative ATP-independent RNA helicase DbpA [Prevotella denticola
           F0289]
 gi|326945192|gb|AEA21077.1| putative ATP-independent RNA helicase DbpA [Prevotella denticola
           F0289]
          Length = 437

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 124/313 (39%), Gaps = 32/313 (10%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT   L+ +   ++A     QAV++ P   LA Q    ++      + +   + G 
Sbjct: 37  TGSGKTYAYLLPLVQRLDASSDELQAVVLVPGRELALQSANVLRDMGSGLRSMP--LYGG 94

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR---FGVQQ 410
            P     + L  +   +  I+  T     D     +I    +  +++DE  +    G Q 
Sbjct: 95  RPTMEEHRMLRDV---KPQIVFATPGRMNDHLDKANINSRTVKWLVIDEFDKCLELGFQD 151

Query: 411 RLK--LTQKATAPHVLLMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            +K  L +       +L++AT    IP  + +     +D          R  + TV  P 
Sbjct: 152 EMKSILCKLPDIERRILLSATDSESIPDFVSMGKTVRLDYRADEGNIPDRIRLYTVSSPE 211

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
                 +E+L + L +     ++          N+R  VER     +    +++  HG +
Sbjct: 212 KDKLGTLEKLLLSLGDRSSIVFL----------NYRDSVERTALFLKEKGFTVSWFHGGL 261

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++E+ +  F NG+  +L++T +   G+D+ D   II  +      + +H++ GR  R
Sbjct: 262 EQREREAALYRFSNGSAPILVSTDLASRGLDIPDVDNIIHYHLPETEDSYVHRV-GRTAR 320

Query: 586 GEEISSCILLYHP 598
            ++      L  P
Sbjct: 321 WDKGGQSFFLLGP 333


>gi|313219322|emb|CBY16445.1| unnamed protein product [Oikopleura dioica]
          Length = 557

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           S   +IHG +    +E  + +F++G  ++L+ T V   G+DV +  ++I         + 
Sbjct: 306 SDAQMIHGDIEQATREQTLQAFRDGKMRVLVCTDVAARGLDVPEVDLVIQTEPPSDIDSY 365

Query: 576 LHQLRGRVGRGEEISSCILLYHP 598
           +H+  GR GR      CI LY P
Sbjct: 366 IHR-SGRTGRAGRSGVCICLYKP 387


>gi|309389449|gb|ADO77329.1| ATP-dependent DNA helicase, RecQ-like protein [Halanaerobium
           praevalens DSM 2228]
          Length = 590

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%)

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           R  V R   L  +    IA  H  +S+ ++    + F     KL++AT    +GID  + 
Sbjct: 239 RKEVNRIYKLLANLDYQIAPYHAGLSEEERTLAQEDFIYDKIKLVVATNAFGMGIDKSNV 298

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             +I  N     +   +Q  GR GR  E + C+LLY P
Sbjct: 299 RFVIHYNMPK-NMESYYQEAGRAGRDGEPADCVLLYSP 335


>gi|242787422|ref|XP_002481003.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218721150|gb|EED20569.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1187

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 74/338 (21%), Positives = 134/338 (39%), Gaps = 43/338 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ----I 350
           I+     SGK+L+  + M   +E     + + + P   LAQ     +K+     +    +
Sbjct: 381 IVSTSTSSGKSLIYQVPMLHELERDPNSRGIYIFPTKALAQDQRRSMKELLNFMEGLDHV 440

Query: 351 IVEIITGNMPQAHRRKALE--RIAHGQAHIIIGTHALFQDSIQYY--KLILVIVDEQHRF 406
           IVE   G+ P   R    +  RI      ++  T    + S + +   L  V+VDE H +
Sbjct: 441 IVETFDGDTPMNERNTIRDEGRIIFTNPDMLHVTILPQEGSWRTFLQNLKFVVVDELHAY 500

Query: 407 G---------VQQRLKLTQKATAPHVL------LMTATPIPRTLVLTSLGDIDISKITEK 451
                     V +RL+    A     +         A P      +  + D+ ++     
Sbjct: 501 NGLFGSHVAFVMRRLRRICAAVGNRRVRFISCSATVANPEEHMKTIFGVDDVRLTDFDGS 560

Query: 452 PAGRK-------PIKTVIIPIN-RIDEVIERLKVVLS---EGKKAYWICPQIEEKKESNF 500
           PAGRK       P K    P + R D + E  ++       G +    C +I ++ E   
Sbjct: 561 PAGRKEFICWNTPFKDPHDPTSGRGDSIAEAARLFCQLVLRGVRVILFC-RIRKQCEIVL 619

Query: 501 RSVVERFNSLHEHFTSSIAIIH-GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV-- 557
            +V   F +L     +++ + + G  S  D+  +     +G    ++AT  +E+G+D+  
Sbjct: 620 AAVRTEFQTLERPEVANLVMGYRGGYSPQDRRQIEKEMFDGKLMGVVATNALELGVDIGS 679

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +DA I +      F ++ L Q  GR GR  + S  +L+
Sbjct: 680 LDAVITL---GFPFSISNLRQQSGRAGRRNKDSLSVLI 714


>gi|158293341|ref|XP_314700.4| AGAP008601-PA [Anopheles gambiae str. PEST]
 gi|157016658|gb|EAA10183.4| AGAP008601-PA [Anopheles gambiae str. PEST]
          Length = 611

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 169/421 (40%), Gaps = 77/421 (18%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-PFS 272
           K  + E T P+    AY+        ++L  ++FK       ++EGK++   ++ I    
Sbjct: 93  KEAEQEETVPSMTNSAYE--------IILGNREFK-------SLEGKVSDHTMKAIGEMG 137

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQAV 325
            TK  E   K I   +  ++    I     GSGKTL  LI     +         G   +
Sbjct: 138 FTKMTEIQAKSIPPLLEGRDL---IGSAKTGSGKTLAFLIPAVELIHKLRFKPRNGAGVI 194

Query: 326 IMAPIGILAQQHYEFIKK-YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++P   LA Q +  +K+  T + Q    ++ G    A R    E++  G  +II+ T  
Sbjct: 195 VISPTRELAMQIFGVLKELMTYHCQTYGLLMGG----ASRHTENEKLEKG-INIIVATPG 249

Query: 385 LFQDSIQ------YYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIPRTL 435
              D ++      +  L  +I+DE  R    G ++ LK           +++  P  R  
Sbjct: 250 RLLDHLKSTPNFLFKNLQCLIIDECDRILEIGFEEDLKQ----------IISILPKKRQT 299

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           +L S      S++ E   G+  +K+  I +   D   E     L +G   Y +CP  E +
Sbjct: 300 MLFSA--TQSSRLEE--LGKLALKSEPIYVGVDDNKKEATVTGLEQG---YIVCPS-ERR 351

Query: 496 --------KESNFRSVVERFNSL------HEHFTS---SIAIIHGRMSDIDKESVMDSFK 538
                   K++  + V+  F+S       HE F      +  IHG+     + SV   F 
Sbjct: 352 LLVLFTFLKKNRKKKVMVFFSSCLSVKFHHELFNYIDLPVMSIHGKQKQSKRTSVFFQFC 411

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +L+ T V   G+D+     I+  +  +     +H++ GR  RGE++    LL   
Sbjct: 412 NAETGILLCTDVAARGLDIPAVDWIVQYDPPNDTKEYIHRV-GRTARGEDLCGHALLMLR 470

Query: 599 P 599
           P
Sbjct: 471 P 471


>gi|325686919|gb|EGD28943.1| primosome assembly protein PriA [Streptococcus sanguinis SK72]
          Length = 795

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 19/187 (10%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I Q + Q +    +L+G  GSGKT V L  +A A+  G  A+++ P I +  Q
Sbjct: 262 QAAAVAAITQKIGQSHSQPVLLEGVTGSGKTEVYLQVIAEALAQGKTAIMLVPEISLTPQ 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               FI ++       V I+   +    +     ++  G A +++G   A+F        
Sbjct: 322 VTDRFISRFGDQ----VAILHSGLSDGEKYDEWRKVERGAAQVVVGARSAIF---APLTN 374

Query: 395 LILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +  +I+DE+H          R+  ++   L  +     ++L +ATP   +    S G  D
Sbjct: 375 IGAIIIDEEHESSYKQDSNPRYHAREVALLRAQYNQAVLVLGSATPSLESRARASRGVYD 434

Query: 445 ISKITEK 451
              ++++
Sbjct: 435 FQLLSKR 441


>gi|322488123|emb|CBZ23369.1| putative nucleolar RNA helicase II [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 684

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID--VVDASIIIIENAEHFGLAQLH 577
            +HG M    +ES M SF++    +LIAT V   G+D  +VD   ++I+ A    +    
Sbjct: 368 CLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVD---LVIQCAPPTDIDAFI 424

Query: 578 QLRGRVGRGEEISSCILLYHP 598
              GR GR      C+LLY P
Sbjct: 425 HRAGRTGRAGRKGVCVLLYQP 445


>gi|319442814|ref|ZP_07991970.1| putative ATP-dependent RNA helicase [Corynebacterium variabile DSM
           44702]
          Length = 456

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +  +HG M   D+E  +D+F++G+  +++AT V   GIDV D + +I           +H
Sbjct: 291 VGAVHGDMRQNDRERSLDAFRDGSVDIMVATDVAARGIDVEDVTHVINYQVPEDDKTYVH 350

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           ++ GR GR       + L    +  +  TR   + +T
Sbjct: 351 RI-GRTGRAGHSGVAVTL----VDWDDLTRWQAIDDT 382


>gi|298708667|emb|CBJ26154.1| ATP-dependent RNA helicase, putative [Ectocarpus siliculosus]
          Length = 1005

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           RF++   + +SS       +S+ D E  +++F++G+  LL++T V E GIDV DA+ ++ 
Sbjct: 341 RFSAACLYASSSPTTASLSLSERDTEENLEAFRSGSVNLLLSTCVAEEGIDVPDANCVVR 400

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            +     ++ + Q RGR  RG E S  +L 
Sbjct: 401 YDPMDHAVSMV-QGRGRA-RGAESSFVVLC 428


>gi|159125976|gb|EDP51092.1| inositol 5-phosphatase, putative [Aspergillus fumigatus A1163]
          Length = 429

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 147/354 (41%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 56  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVVRETQALVLS 109

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + + ++ +GQ H++ GT     D
Sbjct: 110 PTRELATQIQSVIMALGDYMNVQCHACIGGTNIG---EDIRKLDYGQ-HVVSGTPGRVAD 165

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT +P      
Sbjct: 166 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT-LP------ 218

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E 
Sbjct: 219 ----YDVLDMTTKFMT-DPVRVLV----------KRDELTL-EGIKQYFIAV---EKEEW 259

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 260 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 317

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 318 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENY----IHRI-GRSGR 366


>gi|91228876|ref|ZP_01262779.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
 gi|91187564|gb|EAS73893.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
          Length = 419

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 143/343 (41%), Gaps = 58/343 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----AGGQAVI 326
           +PT  QE +I  +L   + KN +L   Q   G+GKT    + +   V+        QA+I
Sbjct: 25  TPTPVQEKSIPHVL---AGKN-LLAAAQ--TGTGKTAAFGLPIIQTVQQKKLNGTPQALI 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-- 384
           + P   LAQQ ++ + +Y+  T++ +  + G      +++ LE      A I+I T    
Sbjct: 79  LVPTRELAQQVFDNLNQYSAETELRIVCVYGGTSIGVQKRKLEE----GADILIATPGRL 134

Query: 385 ---LFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTLV 436
              LF  ++   K  ++++DE  R    G    L+    +      +LL +AT   R   
Sbjct: 135 LDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQILLFSATFEKRIKT 194

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK----AYWICPQI 492
           +         K+ E P     ++  + P N   E + ++   + + +K    AY I  + 
Sbjct: 195 IAY-------KLMESP-----VEVEVSPANTTAETVTQMVYPVDKKRKRELLAYLIGSR- 241

Query: 493 EEKKESNFRSVV--ERFNSLHEHFTSSIAI-------IHGRMSDIDKESVMDSFKNGTCK 543
                 N++ V+   +     +     + +       I+G  S   ++  +D FK G  +
Sbjct: 242 ------NWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVR 295

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            LIAT V   G+D+ +   ++  +        +H++ GR GR 
Sbjct: 296 ALIATDVAARGLDIQELEQVVNFDMPFKAEDYVHRI-GRTGRA 337


>gi|148267210|ref|YP_001246153.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393259|ref|YP_001315934.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|253315816|ref|ZP_04839029.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255005541|ref|ZP_05144142.2| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794929|ref|ZP_05643908.1| helicase [Staphylococcus aureus A9781]
 gi|258418245|ref|ZP_05682510.1| helicase [Staphylococcus aureus A9763]
 gi|258421542|ref|ZP_05684467.1| helicase domain-containing protein [Staphylococcus aureus A9719]
 gi|258430737|ref|ZP_05688449.1| helicase domain-containing protein [Staphylococcus aureus A9299]
 gi|258441771|ref|ZP_05691043.1| helicase domain-containing protein [Staphylococcus aureus A8115]
 gi|258445788|ref|ZP_05693965.1| helicase domain-containing protein [Staphylococcus aureus A6300]
 gi|258449599|ref|ZP_05697701.1| helicase domain-containing protein [Staphylococcus aureus A6224]
 gi|258453999|ref|ZP_05701971.1| helicase domain-containing protein [Staphylococcus aureus A5937]
 gi|282894519|ref|ZP_06302748.1| competence protein ComFA [Staphylococcus aureus A8117]
 gi|282926616|ref|ZP_06334246.1| competence protein ComFA [Staphylococcus aureus A10102]
 gi|295406473|ref|ZP_06816279.1| competence protein ComFA [Staphylococcus aureus A8819]
 gi|296275159|ref|ZP_06857666.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297245199|ref|ZP_06929073.1| competence protein ComFA [Staphylococcus aureus A8796]
 gi|147740279|gb|ABQ48577.1| helicase domain protein [Staphylococcus aureus subsp. aureus JH9]
 gi|149945711|gb|ABR51647.1| helicase domain protein [Staphylococcus aureus subsp. aureus JH1]
 gi|257788901|gb|EEV27241.1| helicase [Staphylococcus aureus A9781]
 gi|257839038|gb|EEV63517.1| helicase [Staphylococcus aureus A9763]
 gi|257842468|gb|EEV66892.1| helicase domain-containing protein [Staphylococcus aureus A9719]
 gi|257849409|gb|EEV73379.1| helicase domain-containing protein [Staphylococcus aureus A9299]
 gi|257852240|gb|EEV76167.1| helicase domain-containing protein [Staphylococcus aureus A8115]
 gi|257855364|gb|EEV78302.1| helicase domain-containing protein [Staphylococcus aureus A6300]
 gi|257857107|gb|EEV80006.1| helicase domain-containing protein [Staphylococcus aureus A6224]
 gi|257863864|gb|EEV86620.1| helicase domain-containing protein [Staphylococcus aureus A5937]
 gi|282591509|gb|EFB96581.1| competence protein ComFA [Staphylococcus aureus A10102]
 gi|282763232|gb|EFC03363.1| competence protein ComFA [Staphylococcus aureus A8117]
 gi|294968618|gb|EFG44641.1| competence protein ComFA [Staphylococcus aureus A8819]
 gi|297177870|gb|EFH37119.1| competence protein ComFA [Staphylococcus aureus A8796]
 gi|315129434|gb|EFT85427.1| helicase domain protein [Staphylococcus aureus subsp. aureus CGS03]
 gi|329724537|gb|EGG61044.1| putative ComF operon protein 1 [Staphylococcus aureus subsp. aureus
           21172]
          Length = 360

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 159/363 (43%), Gaps = 74/363 (20%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++ F  ++ Q  A + I++ +  +  +L  L    G+GKT +    +  A   G    I+
Sbjct: 22  HLSFELSEQQSYASEHIVRAIRMRQTIL--LYAVTGAGKTEMMFQGIQYARRQGDNIAIV 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA------HIIIG 381
           +P                    ++VEI +  +  A   + ++ I H Q+      H ++ 
Sbjct: 80  SP-----------------RVDVVVEI-SKRIKDAFLNEDID-ILHQQSSQQFEGHFVVC 120

Query: 382 T-HALFQDSIQYYKLILVIVDEQHRF------GVQQRLKLTQKATAPHVLLMTATPIPRT 434
           T H L++   Q++  I +  DE   F       +QQ LK + K      + MTATP P+ 
Sbjct: 121 TVHQLYRFK-QHFDTIFI--DEVDAFPLSMDKSLQQALKSSSKVEHA-TIYMTATP-PKQ 175

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPI--------NRIDEVIERLKVVLSEGKKAY 486
           L    L +I    I + PA R   K++ +P         N+I +++ R+           
Sbjct: 176 L----LSEIPHENIIKLPA-RFHKKSLPVPKYRYFKLNNNKIQKMLYRI----------- 219

Query: 487 WICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            +  QI  ++ +     N  ++++ F S+++   + +  +H    D+ +   ++  +NG 
Sbjct: 220 -LQDQINNQRYTLVFFNNIETMIKTF-SVYKQKITKLTYVHS--EDVFRFEKVEQLRNGH 275

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI-SSCILLYHPPL 600
             ++  TT++E G  + +  +++I+ A  +    L Q+ GRVGR  E  +  +L +H  +
Sbjct: 276 FDVIFTTTILERGFTMANLDVVVID-AHQYTQEALIQIAGRVGRKLECPAGKVLFFHEGV 334

Query: 601 SKN 603
           S N
Sbjct: 335 SMN 337


>gi|332358057|gb|EGJ35890.1| primosome assembly protein PriA [Streptococcus sanguinis SK1056]
          Length = 795

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 19/187 (10%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I Q + Q +    +L+G  GSGKT V L  +A A+  G  A+++ P I +  Q
Sbjct: 262 QAAAVAAITQKIGQSHSQPVLLEGVTGSGKTEVYLQVIAEALAQGKTAIMLVPEISLTPQ 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               FI ++       V I+   +    +     ++  G A +++G   A+F        
Sbjct: 322 VTDRFISRFGDQ----VAILHSGLSDGEKYDEWRKVERGAAQVVVGARSAIF---APLTN 374

Query: 395 LILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +  +I+DE+H          R+  ++   L  +     ++L +ATP   +    S G  D
Sbjct: 375 IGAIIIDEEHESSYKQDSNPRYHAREVALLRAQYNQAVLVLGSATPSLESRARASRGVYD 434

Query: 445 ISKITEK 451
              ++++
Sbjct: 435 FQLLSKR 441


>gi|330684829|gb|EGG96522.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU121]
          Length = 509

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 136/335 (40%), Gaps = 68/335 (20%)

Query: 299 QGDVGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           Q   G+GKT    I +   V  E G Q++I+AP   LA Q  E +K +++   + V  + 
Sbjct: 45  QAQTGTGKTGAFGIPLIEKVVGEQGVQSLILAPTRELAMQVAEQLKVFSKGQNVQVVTVF 104

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGV 408
           G MP   + KAL++       I++GT     D +          + LIL   DE    G 
Sbjct: 105 GGMPIERQIKALKK----GPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGF 160

Query: 409 QQRLKLTQK---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
              ++       A     +L +AT +P                       K I+T++   
Sbjct: 161 IDDMRFIMDKIPAEQRQTMLFSAT-MP-----------------------KAIQTLVQQF 196

Query: 466 NRIDEVIERLKVVLSEGK--KAYWICPQIEE-KKESNFRSVVE--------RFNSLHEHF 514
            +  ++I+ +   +S+ +  + Y I  ++E+    +NF  V +        R     +  
Sbjct: 197 MKTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDEL 256

Query: 515 TSSI-------AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII---- 563
           TS++         +HG ++   +  V+  FKN    +L+AT V   G+D+   S +    
Sbjct: 257 TSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFD 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           I ++ E +     H++ GR GR  +    +   +P
Sbjct: 317 IPQDTESY----THRI-GRTGRAGKEGIAVTFVNP 346


>gi|322516389|ref|ZP_08069314.1| primosome assembly protein PriA [Streptococcus vestibularis ATCC
           49124]
 gi|322125122|gb|EFX96515.1| primosome assembly protein PriA [Streptococcus vestibularis ATCC
           49124]
          Length = 798

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 75/397 (18%), Positives = 153/397 (38%), Gaps = 106/397 (26%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   +  G  A+++ P I +  Q    FI ++      +V I+
Sbjct: 285 LLEGVTGSGKTEVYLHLIERTLAMGKTAIVLVPEISLTPQMTNRFISRFGD----LVAIM 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH----------R 405
              +    +     ++  GQA +++G  +     ++   +  +I+DE+H          R
Sbjct: 341 HSGLSDGEKFDEWRKVRSGQAKVVVGARSAIFAPLE--NIGAIIIDEEHEATYKQESNPR 398

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP------------- 452
           +  +    L  K+    ++L +ATP   +      G     ++TE+              
Sbjct: 399 YHARDVALLRAKSHGAVLVLGSATPSIESRARAQKGVYHFLELTERANPKAKIPQVEVVD 458

Query: 453 ----AGRKPIKTVIIPINRIDEVIERL----KVVLSEGKKAY------------------ 486
                GR+       P+  ++++ ERL    +VVL   ++ Y                  
Sbjct: 459 FKDFVGRQEASDFTPPL--LEKIRERLARKEQVVLMLNRRGYSSFVMCRDCGYVDDCPNC 516

Query: 487 -------------------------WICPQIEEKKESNFRSVVER-FNSLHEHFTSSIAI 520
                                     +CP  + ++   + +  ++ ++ L E    +  I
Sbjct: 517 DISLTLHMDTKTMNCHYCDFQKAIPHVCPNCQSRQIRYYGTGTQKAYDQLTELLPEARVI 576

Query: 521 IHGRMSDIDK-------ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE---- 569
              RM D+D        E ++++F +G   +L+ T +I  G+D  + +++ + NA+    
Sbjct: 577 ---RM-DVDTTRKKGAHEKLLETFGSGQADILLGTQMIAKGLDFPNVTLVGVLNADTSLN 632

Query: 570 --HFGLAQ-----LHQLRGRVGRGEEISSCILLYHPP 599
              F  A+     L Q+ GR GR ++    I+  + P
Sbjct: 633 LPDFRSAERTFQLLTQVAGRAGRADKEGEVIIQTYNP 669


>gi|302839493|ref|XP_002951303.1| hypothetical protein VOLCADRAFT_120953 [Volvox carteri f.
           nagariensis]
 gi|300263278|gb|EFJ47479.1| hypothetical protein VOLCADRAFT_120953 [Volvox carteri f.
           nagariensis]
          Length = 414

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 124/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++      Q+   
Sbjct: 82  IQQAQSGTGKTATFCAGILNNLDYNLNECQALVLAPTRELAQQIEKVMRALGDFLQVKCH 141

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA----------LFQDSIQYYKLILVIVDEQ 403
              G    + R  A  RI      +++GT            L  D+I+ +  +L   DE 
Sbjct: 142 ACVGGT--SVREDA--RILGAGVQVVVGTPGRVFDMLRRRYLRADNIKMF--VLDEADEM 195

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++    +   P   V + +AT  P  L +T        K   KP        V
Sbjct: 196 LSRGFKDQIYDIFQLLPPKLQVGVFSATLPPEALEITR-------KFMNKP--------V 240

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K    +  K  W    + +  E+          N R  V+      
Sbjct: 241 RILVKRDELTLEGIKQFYVDVDKEEWKLDTLCDLYETLAITQSVIFANTRRKVDWLTEKM 300

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 301 RERDHTVSATHGDMEQNARDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 360

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 361 PENYLHRI-GRSGR 373


>gi|169869158|ref|XP_001841147.1| ATP-dependent RNA helicase eIF4A [Coprinopsis cinerea okayama7#130]
 gi|116497789|gb|EAU80684.1| ATP-dependent RNA helicase eIF4A [Coprinopsis cinerea okayama7#130]
          Length = 397

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 122/295 (41%), Gaps = 50/295 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++    G QA+I+AP   LAQQ  + +        I   
Sbjct: 65  IAQAQSGTGKTATFSISILQQLDMSIKGTQALILAPTRELAQQIQKVVIALGDYMNIECH 124

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G     + R+ + ++  G  H+++GT           A   D I+ +   L   DE 
Sbjct: 125 ACVGG---TNVREDMAKLQEG-VHVVVGTPGRVYDMINRRAFRTDHIKIF--CLDEADEM 178

Query: 404 HRFGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
              G + ++    +L  + T   V+L++AT     L +T            K   R P++
Sbjct: 179 LSRGFKDQIYDVFQLLPQDT--QVVLLSATMPAEVLEVT------------KKFMRDPVR 224

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNS 509
              I + R +  +E +K      +K  W    + +  E+          N R  V+    
Sbjct: 225 ---ILVKRDELTLEGIKQFYIAVEKEEWKLDTLCDLYETVTITQAVIFCNTRRKVDWLTE 281

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                  +++ +HG M    +E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 282 KMHAREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLITTDLLARGIDVQQVSLVI 336


>gi|110641577|ref|YP_669307.1| ATP-dependent RNA helicase DbpA [Escherichia coli 536]
 gi|110343169|gb|ABG69406.1| ATP-independent RNA helicase DbpA [Escherichia coli 536]
          Length = 457

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 130/332 (39%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVICFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++         VV    KK              + +SV +
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSC-----VVFCNTKK--------------DCQSVCD 259

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             N + +   S    +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 260 ALNEVGQSALS----LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|90022842|ref|YP_528669.1| dystroglycan-type cadherin-like protein [Saccharophagus degradans
           2-40]
 gi|89952442|gb|ABD82457.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 516

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 142/360 (39%), Gaps = 68/360 (18%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVG--SGKTLVALIAMAAAVEAG-------G 322
           +PT  Q  AI  +L+       ++   Q   G  +G TL  L  +A  +E G        
Sbjct: 40  TPTPIQAQAIPPVLEGRD----VMAAAQTGTGKTAGFTLPILEILAEGIENGRKVKPNQA 95

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHII 379
           +A+++ P   LA Q  E +  Y +   I   I+ G +   PQ  + +       G   I+
Sbjct: 96  RALVLTPTRELAAQVGENVALYGKYLPIKSTIVFGGVKINPQMMKLR-------GGVDIL 148

Query: 380 IGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR- 433
           + T     D     ++++ +L ++++DE  R      +   +K       +M   P  R 
Sbjct: 149 VATPGRLMDLYNQRAVKFDQLEMLVLDEADRMLDMGFIHDIRK-------IMAILPKKRQ 201

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI ++  K     P++  + P N       R+K          WICP  +
Sbjct: 202 NLMFSATFSQDIRELA-KSIVNNPVEITVNPPN---STATRVK---------QWICPVDK 248

Query: 494 EKK--------ESN-------FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           ++K        ++N       F       N L +    S    A IHG  S   +   + 
Sbjct: 249 KEKPALLTHLIKTNKWQQVLVFSRTKHGANKLVKQLEGSGLRAAAIHGNKSQGARTKALA 308

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FKNGT K+L+AT +   G+D+     ++  +        +H++ GR GR     + + L
Sbjct: 309 EFKNGTVKILVATDIAARGLDIDQLPQVVNFDLPQVAEDYVHRI-GRTGRAGAEGNAVSL 367


>gi|51473847|ref|YP_067604.1| ATP-dependent RNA helicase RhlE [Rickettsia typhi str. Wilmington]
 gi|51460159|gb|AAU04122.1| probable ATP-dependent RNA helicase RhlE [Rickettsia typhi str.
           Wilmington]
          Length = 407

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 136/313 (43%), Gaps = 33/313 (10%)

Query: 302 VGSGKTLVALIAMAAA-VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGKTL  L+ +  A ++    A+I+ P   LA Q +  + K T   +I   ++ G  P
Sbjct: 45  TGSGKTLAYLLPLIDAFIKNKTTALILVPTRELATQIHSTLNKVTIAYKINSAVLIGGEP 104

Query: 361 QAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRL 412
              +   L++       +IIGT       L + S++   + ++++DE  R    G++++L
Sbjct: 105 MFKQFMQLKK----NPKVIIGTPGRIIEHLNRRSLKIEHIGIIVLDEMDRMLDMGMKEQL 160

Query: 413 KLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +   K       VL+ +AT +P+ ++  S   ++            P++ ++   N+   
Sbjct: 161 EDINKFLPEKRQVLMFSAT-MPKHIIAVSQKYLN-----------NPVRIMVGATNKAAA 208

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRM 525
            I++  + +S  +K   +  Q+  +  S       +   ++   + ++       IHG +
Sbjct: 209 EIKQELMHVSNKEKFSELTKQLGNRVGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDL 268

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S   +  V+ SF+    ++++AT V   G+D+     +I  +        LH++ GR GR
Sbjct: 269 SQSQRARVILSFRKLNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRI-GRTGR 327

Query: 586 GEEISSCILLYHP 598
              I   +    P
Sbjct: 328 AGAIGHALSFISP 340


>gi|67623565|ref|XP_668065.1| ATP-dependent RNA helicase [Cryptosporidium hominis TU502]
 gi|54659251|gb|EAL37837.1| ATP-dependent RNA helicase [Cryptosporidium hominis]
          Length = 361

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 500 FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F + V R   L +  T   SS   IH RM    +  V   F+NG C+ L+++ +I  GID
Sbjct: 231 FCNSVTRVELLAKKITELGSSCFYIHARMLQSHRNRVFHDFRNGACRCLVSSDLITRGID 290

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +   +++I  +   +    LH++ GR GR
Sbjct: 291 IQSVNVVINFDFPKYSETYLHRI-GRSGR 318


>gi|332364577|gb|EGJ42346.1| primosome assembly protein PriA [Streptococcus sanguinis SK1059]
          Length = 795

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 19/187 (10%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I Q + Q +    +L+G  GSGKT V L  +A A+  G  A+++ P I +  Q
Sbjct: 262 QAAAVAAITQKIGQSHSQPVLLEGVTGSGKTEVYLQVIAEALAQGKTAIMLVPEISLTPQ 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               FI ++       V I+   +    +     ++  G A +++G   A+F        
Sbjct: 322 VTDRFISRFGDQ----VAILHSGLSDGEKYDEWRKVERGAAQVVVGARSAIF---APLTN 374

Query: 395 LILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +  +I+DE+H          R+  ++   L  +     ++L +ATP   +    S G  D
Sbjct: 375 IGAIIIDEEHESSYKQDSNPRYHAREVALLRAQYNQAVLVLGSATPSLESRARASRGVYD 434

Query: 445 ISKITEK 451
              ++++
Sbjct: 435 FQLLSKR 441


>gi|327459301|gb|EGF05647.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1]
 gi|327490518|gb|EGF22299.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1058]
 gi|332364598|gb|EGJ42367.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1059]
          Length = 447

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 149/358 (41%), Gaps = 44/358 (12%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAV 318
           Q+ LR++ F   T  QE  I  +L       R L + +   GSGKT   L+ +  M    
Sbjct: 13  QEALRDLNFVEATPVQEKLIPVVLS-----GRDL-VGESKTGSGKTHTFLLPIFQMLDEE 66

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               QAVI AP   LA Q Y+  ++       +I V    G   +A +   LE     Q 
Sbjct: 67  ADSVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGKLE---SSQP 123

Query: 377 HIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           HI+IGT     D ++   L +      +VDE         L +   AT   +    A  +
Sbjct: 124 HIVIGTPGRIYDLVESGDLAIHKAKTFVVDE-----ADMTLDMGFLATVDKI----AGRL 174

Query: 432 PRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGK---- 483
           P+ L           K+  +P  +K    P+   I     I + IE   ++ ++G+    
Sbjct: 175 PKDLQFLVFSATIPQKL--QPFLKKYLSNPVIEQIKTKTVIADTIENW-LLSTKGRDKNA 231

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           + Y I   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN 
Sbjct: 232 QIYQISQLLQPYLAMIFVNTKMRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLHGTAITLYQP 348


>gi|315604717|ref|ZP_07879780.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313729|gb|EFU61783.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 917

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 96/465 (20%), Positives = 190/465 (40%), Gaps = 86/465 (18%)

Query: 290 QKNRMLRILQGD-------VGSGKTLVALIAMAAAVEAGGQAVIMAPI-GILAQQHYEFI 341
           Q+  ++ IL G+        GSGK+++AL A   ++  GG++   AP+  +++++ ++ +
Sbjct: 43  QEEALVEILAGNHVIAATPTGSGKSMIALAAHFTSMAHGGRSYYTAPLKALVSEKFFDLV 102

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-SIQYYKLI---L 397
             +  +    V ++TG++             +  A II  T  +  + S++    +   +
Sbjct: 103 SLFGADN---VGMVTGDVS-----------LNADAPIICCTAEILANQSLREGPSLDADM 148

Query: 398 VIVDEQHRFGVQQRLKLTQ----KATAPHVLLMTAT-----PIPRTLVLTSLGDIDISKI 448
           +++DE H +G +QR    Q    + TAP V+ M+AT        R+    +  D+ +   
Sbjct: 149 IVMDEFHFYGDRQRGWAWQVPLLELTAPQVVAMSATLGDTSHFERSWKERTGRDVALVDD 208

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP------------------ 490
            E+P    P++   + ++R+ + +ERL   L EG+   +I                    
Sbjct: 209 AERPV---PLEFDYV-VDRLPDTVERL---LGEGRWPVYIVHFSQRDAVATAQSFDRSSL 261

Query: 491 -QIEEKKESNFR----SVVERFN-SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              ++KKE   +    S  + F  +L       I + H  M    +  V    + G   +
Sbjct: 262 ISADQKKEIGAQLAGVSFTKGFGQTLKSLLAQGIGVHHAGMLPRYRRLVERLTQAGLLPI 321

Query: 545 LIATTVIEVGIDVVDASIIIIE-------NAEHFGLAQLHQLRGRVGR-GEEISSCILLY 596
           +  T  + VGI+V   ++++            H    + HQ+ GR GR G +    + + 
Sbjct: 322 VCGTDTLGVGINVPIRTVLMTSLVKYDGRRMRHVSAREFHQIAGRAGRAGFDTVGFVRVL 381

Query: 597 HPP---LSKNSYTRLS----VLKNTEDGFLIAEEDLKQRK--EGEILGIKQSGMPKFLIA 647
            P     S     RLS      ++  +    A +  K+RK  E   +   +S   + + A
Sbjct: 382 APEHEVESARERARLSAAQEAARDAREAKRAARKSAKKRKGPEAGEVSWTRSTFDRLVEA 441

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            PE   S  E+      ++L   P      G+    L++L + N+
Sbjct: 442 APEKLTSRFEMTHAMVLNVLAGAPAAGRDPGEH---LVWLARNND 483


>gi|307324569|ref|ZP_07603776.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306889813|gb|EFN20792.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 463

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 121/311 (38%), Gaps = 19/311 (6%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  +   A+++ P   LAQQ  E +  Y +   +  
Sbjct: 89  RGRTGSGKTLAFGLALLARTAGQRAEPRRPLALVLVPTRELAQQVTEALTPYARRLGLRA 148

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G M    +  AL       + ++I T     D I+     L   D+     + +  
Sbjct: 149 ATVVGGMSINRQADALR----NGSEVVIATPGRLYDLIERGDCRL---DQVRTTVLDEAD 201

Query: 413 KLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           ++      P V  LL       + L+ ++  D DISK+T +      + +V      +  
Sbjct: 202 QMADMGFLPQVTRLLRQVPADGQRLLFSATLDHDISKLTRQFLDDPAVHSVDPSAGAVTT 261

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSD 527
           +   +  +    K++        + +   F       + L  H  +S    A +HG  S 
Sbjct: 262 MEHHVLHIADTDKRSVVTRVAARDGRVLLFLDTKRAVDRLTRHLLTSGVRAAALHGGKSQ 321

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +   +D FK+G    L+AT V   GI V D  +++  +        LH+  GR  R  
Sbjct: 322 PQRTRTLDQFKSGHVTALVATNVAARGIHVDDLDLVVNVDPPADHKDYLHR-GGRTARAG 380

Query: 588 EISSCILLYHP 598
              S I L  P
Sbjct: 381 GSGSVITLVTP 391


>gi|299783495|gb|ADJ41493.1| ATP-dependent RNA helicase [Lactobacillus fermentum CECT 5716]
          Length = 439

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 128/313 (40%), Gaps = 50/313 (15%)

Query: 302 VGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GSGKTL     +   V    G Q +++ P   LA Q    ++++     + V   TG  
Sbjct: 40  TGSGKTLAFTWPLLPKVMKGQGTQILVLEPSQELALQTTRVMREWAALLGLKVHSATGG- 98

Query: 360 PQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQR 411
             A+ R+  ER+   +  +++GT     H L    ++   L  +++DE     R   Q  
Sbjct: 99  --ANLRRQTERLKKERPEVVVGTPGRILHLLDTRDLKLNNLATLVIDEADDLLRDDTQAV 156

Query: 412 LKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISKITEKPA--GRKPIKTVIIPINR 467
           ++  ++AT     +   +AT       L  L   D+ KI  +     R P+K  ++    
Sbjct: 157 VEDIERATPLDTQLAFFSATQSTTLEQLDVLFGRDLVKIDVRAQDHSRGPVKHGLVVART 216

Query: 468 IDE---VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE-HFTSS------ 517
           + +   ++ERL                    +  NFR++V  F S+   H+T+S      
Sbjct: 217 MSDKAVMLERLS-------------------QTKNFRALV-FFTSIKTLHYTASRLRHDG 256

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
              A + GR    ++E+VM  F+    KLL+ T V   G+D+     ++     +     
Sbjct: 257 ISSATLGGRQRQTERETVMRQFRKHQVKLLLTTDVAARGLDIPKLPAVVNFELPNTADGY 316

Query: 576 LHQLRGRVGRGEE 588
           +H+  GR GR  E
Sbjct: 317 VHRT-GRTGRQGE 328


>gi|282897303|ref|ZP_06305305.1| DEAD/DEAH box helicase-like protein [Raphidiopsis brookii D9]
 gi|281197955|gb|EFA72849.1| DEAD/DEAH box helicase-like protein [Raphidiopsis brookii D9]
          Length = 497

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 153/358 (42%), Gaps = 52/358 (14%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L N+ F+ PT  Q  AI  +L           + Q   G+GKT    + +   ++     
Sbjct: 19  LENMGFTTPTNIQSQAIPQLLAGRDV------VGQSQTGTGKTAAFSLPILERLDPNKRA 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q ++ I ++  ++++ V  I G   Q+  R+ ++ +  G  H+++G
Sbjct: 73  VQALVLTPTRELAMQVHDAISQFMGDSELRVLAIYGG--QSIDRQMIQ-LKRG-VHVVVG 128

Query: 382 T----------HALFQDSIQYYKLILVIVDEQHRFG-VQQRLK-LTQKATAPHVLLMTAT 429
           T           +L  D ++++  +L   DE    G +   +K L+Q        L +AT
Sbjct: 129 TPGRVIDLLERGSLKLDQVKWF--VLDEADEMLSMGFIDDVIKILSQAPQERQTALFSAT 186

Query: 430 PIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  R LV   L    ++   E+P      K     IN++  +I R         KA  
Sbjct: 187 MPPSIRQLVNKFLNS-PVTVTVEQP------KATPTKINQVAYLIPR------HWTKAKA 233

Query: 488 ICPQIE-EKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           + P +E E  E+        R+  E  N L +    S+   HG +S   +E ++  F+N 
Sbjct: 234 LQPILEMEDPETALIFVRTRRTAAELTNQL-QSAGHSVDEYHGDLSQQARERLLTRFRNR 292

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + ++AT +   G+DV   S +I  +        +H++ GR GR  +  + I L  P
Sbjct: 293 QVRWVVATDIAARGLDVDLLSHVINFDLPDSVETYVHRI-GRTGRAGKEGTAISLVQP 349


>gi|262170390|ref|ZP_06038068.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio mimicus MB-451]
 gi|261891466|gb|EEY37452.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio mimicus MB-451]
          Length = 734

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    S +     +L+G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 199 PKLNQEQAIA-IAAVNSHQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 258 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 312 FAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHFENIPIVLGSATPALETLHNALSG 371

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 372 KYHHLQLTQRAGNALPTRN 390


>gi|253575858|ref|ZP_04853192.1| helicase domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251844652|gb|EES72666.1| helicase domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 387

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 68/341 (19%), Positives = 139/341 (40%), Gaps = 42/341 (12%)

Query: 282 KDILQDMSQKNRMLRILQGDV-GSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYE 339
           + + + M  + R  R L   V G+GKT +    +  A+++GG+ ++  P   ++ +    
Sbjct: 44  RSLSRQMETEPRPPRFLLWAVTGAGKTEMIFPLLRYALDSGGRVLVATPRRDVVLELAPR 103

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K + +     + ++ G  PQ      L         I+  TH L +    Y    LV+
Sbjct: 104 VAKAFPEEP---MAVLYGGSPQRWEEARL---------ILATTHQLMR---FYQAFDLVV 148

Query: 400 VDEQHRFGVQQRLKLTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           +DE   F       L   A A        + ++ATP  R       G +  +K+  +  G
Sbjct: 149 IDELDAFPYHNDPMLNFAAEAACKPEGRFIFLSATPPARMRREIRAGRLPHAKVPARYHG 208

Query: 455 -------RKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
                  R  + +V + + R      ++  L+  +  G + +    +I +         +
Sbjct: 209 YPLPVPERIAMASVEVCLLRRFLPPALLHPLQHSVQRGAQIFIFVTRIRQ---------I 259

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             F  L   +   + I      D D+   + +F+ G  ++L+ TT++E G+ V  + + I
Sbjct: 260 AAFTELLRTYFPGLPIEGTSSIDPDRSEKVLAFREGRIRMLVTTTILERGVTVPKSDVYI 319

Query: 565 IE-NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           ++ +++ F  A L Q+ GR GR ++  +  +++  P    S
Sbjct: 320 VDADSDLFDEASLVQMAGRAGRSKDDPNGKVVFAAPAWTKS 360


>gi|255078160|ref|XP_002502660.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
 gi|226517925|gb|ACO63918.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
          Length = 611

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 112/282 (39%), Gaps = 32/282 (11%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH------GQAH 377
           A+++AP   LA Q  +   K+       V  + G   +  + +AL   A       G+ H
Sbjct: 245 AIVLAPTRELAIQIGDECAKFCPAAGAKVVTLYGGASKGDQLRALRSGADVLVATPGRLH 304

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTAT--- 429
             +     F   +       V++DE  R    G + ++K  +    TA   L+ TAT   
Sbjct: 305 DFLAPPPGFSAPVSARNAHYVVLDEADRMLDMGFEPQIKKIIKMCPTARQTLMFTATWPD 364

Query: 430 ---PIPRTLVLTSLGDIDISKITEKPAGRKPIKT---VIIPINRIDEVIERLKVVLSEGK 483
               I  T +      + I    ++    K I     ++    ++D  I  LK  L +G 
Sbjct: 365 GVRKIADTFLQPDAALVRIGDGGDRLTANKSITQTIEIVTEDQKLDRAIAVLKENLVDGA 424

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +    C     K+  +F   ++R   +      S   IHG     ++E  +D F+ G   
Sbjct: 425 RGIVFC---GTKRRCDF---IDR--KMKAMGLRSAGAIHGDKDQAEREYSLDLFRKGKAP 476

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           LL+AT V   G+D+   +++++ +   F L Q+     R+GR
Sbjct: 477 LLVATDVAARGLDIPGVTVVLVYD---FPL-QVEDYVHRIGR 514


>gi|222109707|ref|YP_002551971.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221729151|gb|ACM31971.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 469

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 130/312 (41%), Gaps = 40/312 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I Q   GSGKT    +AM   +       Q +++ P   LA Q    I++  +    I V
Sbjct: 55  IAQASTGSGKTAAFGLAMVDRLNPRWFAVQGLVLCPTRELADQVATEIRRLARAQDNIKV 114

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G +P   +  +LE      AHI++GT     D ++  KL +     +++DE  R  
Sbjct: 115 VTVYGGVPSRGQIASLEN----GAHIVVGTPGRVMDLMERGKLDIAKLKTLVLDEADRML 170

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
              F       + Q       LL +AT  P  +   +   +   ++ +  A     K   
Sbjct: 171 DMGFLADIETVVRQCPAERQTLLFSAT-YPDGIAGLAQRFMRAPQMVKVAAQHGAGKIA- 228

Query: 463 IPINRIDEVIERLKV-----VLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHFT 515
               R  EV  R KV     +L+  + A  I  C       +   R+VV    +L     
Sbjct: 229 ---QRWYEVDAREKVDVVARMLAHFRPASSIAFC-----NTKQQCRNVV---TALQSQGF 277

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           S++A+  G +   +++ V+  F N +C +L+AT V   GID+ D S +I  +        
Sbjct: 278 SALALF-GELEQRERDEVLVQFANKSCSVLVATDVAARGIDIADLSAVINVDVTPDPEVH 336

Query: 576 LHQLRGRVGRGE 587
           +H++ GR GRG+
Sbjct: 337 IHRI-GRTGRGD 347


>gi|198465797|ref|XP_002135041.1| GA23460 [Drosophila pseudoobscura pseudoobscura]
 gi|198150317|gb|EDY73668.1| GA23460 [Drosophila pseudoobscura pseudoobscura]
          Length = 825

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 148/341 (43%), Gaps = 49/341 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA---MAAAVEAGGQAVIMA 328
           +PTK Q +AI   L  M        ++Q   G+GKTL+ ++    M +      + +++ 
Sbjct: 47  TPTKIQAAAIPIALTGMD------LLVQSKSGTGKTLIYVVTALQMCSLSTQHPEVLVIL 100

Query: 329 PIGILAQQHYEFIKKYTQNTQII-VEIITGNMPQAHRRKALERIAHGQAHIIIGTHA--- 384
           P   LA Q ++  +   +  +   V    G       R+ L        H+ IGT     
Sbjct: 101 PTRELALQVHDIFRFLGEKLRSFKVSSFMGGTDVTRDREKLR-----NCHVAIGTPGRLL 155

Query: 385 -LFQDSIQYYKLI-LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG- 441
            L +  +    ++ L+++DE  +  V   L+ T  A      L+   P+ R ++  S   
Sbjct: 156 QLHEKGVLNMSMVKLLVLDEADQLYVTASLQKTVNA------LIAVLPLQRQVIACSATF 209

Query: 442 ----DIDISKITEKPA--GRKPIKTVIIPI--------NRIDEVIERLKVVLSEGKKAYW 487
               D  I+K+ EKP         TV++ I         +++ ++E +++ L   KK   
Sbjct: 210 DQNLDEKIAKMMEKPVLISNSERATVLLGIRQFVYELPEQVNNLLE-MRLKLEALKK--- 265

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKL 544
           I  Q+  ++   F +   R +S   +  +     A++ G ++  D+  V + ++N + + 
Sbjct: 266 IFAQLNYEQAVLFSNSKMRADSYCSYLNAGKIPCALLSGDLAQEDRSKVFEGYRNFSVRT 325

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++AT +I  G+D   A+++I  +     +  LH++ GR GR
Sbjct: 326 IVATDLIARGVDSHHANLVINLDPPTDHITYLHRI-GRAGR 365


>gi|156087495|ref|XP_001611154.1| p68 RNA helicase protein [Babesia bovis T2Bo]
 gi|154798408|gb|EDO07586.1| p68 RNA helicase protein, putative [Babesia bovis]
          Length = 568

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 143/359 (39%), Gaps = 45/359 (12%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV-------ALIAM 314
           Q+I++N+ F  PT  Q+      L        ++ + Q   GSGKTL         L+A 
Sbjct: 195 QRIIKNMGFIEPTPIQKVGWTSCLTGRD----VVGVSQ--TGSGKTLAFLLPGLLHLLAQ 248

Query: 315 AAAVEAGGQAV-IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                  G  + I+AP   L QQ YE  KK+ +   +   I+ G + +  +++ L     
Sbjct: 249 PPVTPGNGPVILILAPTRELCQQTYEETKKFMRVMNLRGAILYGGVSKYQQQQQLT---- 304

Query: 374 GQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHV 423
           G   I++ T     D +    L L      ++DE  R     F  Q R+  +Q       
Sbjct: 305 GGVDIMVATPGRLLDCLSSGLLRLDRVSYFVLDEADRMLDMGFEPQIRMIASQIRPDRQT 364

Query: 424 LLMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           LL +AT    I R        +    ++ +K     P  T  + + R DE    L   L+
Sbjct: 365 LLFSATWPASIRRLASEFCKTNCIYIQVGDKELTANPNITQTVKVLRSDETFPFLCNFLT 424

Query: 481 EGKKAYWICPQIEEK--KESNFRSVVER-FNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
                  I   +E +   ++  R +  R  N+L          IHG  S   ++  +  F
Sbjct: 425 TEAYNKKILIFVESRIGADTLVRDLARRGLNALS---------IHGNKSQSQRDHTVSQF 475

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           ++G   +++AT V   G+D+ +   ++  +        +H++ GR  RG    + +LL+
Sbjct: 476 RSGAVNIMVATDVASRGLDIKNIDYVVNMDVPRTIEDYIHRI-GRTARGNMKGNSLLLF 533


>gi|126306068|ref|XP_001381369.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction
           Complex With A Trapped Dead-Box Helicase Bound To Rna
           [Monodelphis domestica]
          Length = 404

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 149/349 (42%), Gaps = 75/349 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ A+K I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 54  PSAIQQRALKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 107

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +      G        + L+R   GQ H++ GT     D 
Sbjct: 108 TRELAVQIQKVLLALGDYMNVQCHACIGGTNVGDDIRQLDR---GQ-HVVAGTPGRVFDM 163

Query: 390 IQYYKLI-----LVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L      ++++DE  +    G ++++    +   P   V+L++AT     L +T+
Sbjct: 164 IRRRSLTTRAIKMLVLDEADQMLDKGFKEQIYDVYRYLPPSIQVVLISATLPHEILEMTT 223

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D            PI+ ++    R DE+         EG K +++     E++E  
Sbjct: 224 KFMTD------------PIRILV----RRDELT-------LEGIKQFFVAV---EREEWK 257

Query: 500 FRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMDS 536
           F +V + ++SL                         +FT  ++ IHG M   +++ +M  
Sbjct: 258 FDTVCDLYDSLTITQAVIFCNTKRKVDWLTEKMREANFT--VSSIHGDMPSRERKFIMKE 315

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           F++G  ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 316 FRSGVNRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 363


>gi|5281068|gb|AAD41441.1|U92536_1 RECQ helicase homolog [Drosophila melanogaster]
          Length = 1487

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 9/80 (11%)

Query: 522  HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LH 577
            H  ++D D+ES    +  G  +++ AT    +GID  D   ++     H+ L +     +
Sbjct: 989  HAGLTDTDRESRQKDWLTGKMRVICATVAFGMGIDKPDVRFVL-----HYSLPKSIEGYY 1043

Query: 578  QLRGRVGRGEEISSCILLYH 597
            Q  GR GR  +++ CIL Y+
Sbjct: 1044 QEAGRAGRDGDVADCILYYN 1063


>gi|312863149|ref|ZP_07723387.1| primosomal protein N' [Streptococcus vestibularis F0396]
 gi|311100685|gb|EFQ58890.1| primosomal protein N' [Streptococcus vestibularis F0396]
          Length = 797

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 75/397 (18%), Positives = 153/397 (38%), Gaps = 106/397 (26%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   +  G  A+++ P I +  Q    FI ++      +V I+
Sbjct: 284 LLEGVTGSGKTEVYLHLIERTLAMGKTAIVLVPEISLTPQMTNRFISRFGD----LVAIM 339

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH----------R 405
              +    +     ++  GQA +++G  +     ++   +  +I+DE+H          R
Sbjct: 340 HSGLSDGEKFDEWRKVRSGQAKVVVGARSAIFAPLE--NIGAIIIDEEHEATYKQESNPR 397

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP------------- 452
           +  +    L  K+    ++L +ATP   +      G     ++TE+              
Sbjct: 398 YHARDVALLRAKSHGAVLVLGSATPSIESRARAQKGVYHFLELTERANPKAKIPQVEVVD 457

Query: 453 ----AGRKPIKTVIIPINRIDEVIERL----KVVLSEGKKAY------------------ 486
                GR+       P+  ++++ ERL    +VVL   ++ Y                  
Sbjct: 458 FKDFVGRQEASDFTPPL--LEKIRERLARKEQVVLMLNRRGYSSFVMCRDCGYVDDCPNC 515

Query: 487 -------------------------WICPQIEEKKESNFRSVVER-FNSLHEHFTSSIAI 520
                                     +CP  + ++   + +  ++ ++ L E    +  I
Sbjct: 516 DISLTLHMDTKTMNCHYCDFQKAIPHVCPNCQSRQIRYYGTGTQKAYDQLTELLPEARVI 575

Query: 521 IHGRMSDIDK-------ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE---- 569
              RM D+D        E ++++F +G   +L+ T +I  G+D  + +++ + NA+    
Sbjct: 576 ---RM-DVDTTRKKGAHEKLLETFGSGQADILLGTQMIAKGLDFPNVTLVGVLNADTSLN 631

Query: 570 --HFGLAQ-----LHQLRGRVGRGEEISSCILLYHPP 599
              F  A+     L Q+ GR GR ++    I+  + P
Sbjct: 632 LPDFRSAERTFQLLTQVAGRAGRADKEGEVIIQTYNP 668


>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii DSM
           519]
 gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii]
          Length = 515

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 140/344 (40%), Gaps = 62/344 (18%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           SPT  QE  I   +Q +        I Q   G+GKT    I + + +E G    QA+I+A
Sbjct: 24  SPTPIQEQIIPLAMQGIDL------IGQAQTGTGKTAAFGIPLLSKIEKGNKAVQALILA 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I +  +   +    I G      + + L++       I++ T   F D
Sbjct: 78  PTRELALQVSQEINRLAKYKNVEAIAIYGGEDIGKQIRGLKK----NPQIVVATPGRFMD 133

Query: 389 -----SIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
                +I    +  VI+DE       G  + ++  L +  +    LL +AT +P+ +   
Sbjct: 134 HMRRNTINLANIQTVILDEADEMLSMGFIEDIETILQEVPSERQTLLFSAT-MPKRIQSV 192

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKVVLSEGKKAYWIC-------P 490
           S       K  + P      +TV +    +  + IE+  + L E  K   +C       P
Sbjct: 193 S------QKFMKSP------QTVAVKNKTMTVDTIEQRYLDLKERDKFDALCRLMDIHCP 240

Query: 491 QIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           ++       F     R + L E  +     +  IHG M    +E V+  FK G+ K+L+A
Sbjct: 241 ELS----IIFGRTKRRVDELSEALSIRGYDVEGIHGDMKQERREKVLRRFKRGSIKILVA 296

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVGRG 586
           T V   G+D+   S +      +F L Q     +H++ GR GR 
Sbjct: 297 TDVAARGLDISGVSHVF-----NFDLPQDPESYVHRI-GRTGRA 334


>gi|224046936|ref|XP_002196956.1| PREDICTED: putative DEAD box polypeptide 48 [Taeniopygia guttata]
          Length = 341

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 138/326 (42%), Gaps = 57/326 (17%)

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILA---QQHYEFIKK 343
           Q     R L+   G+GKT    I++   ++      QA+I+AP   LA   Q+    +  
Sbjct: 2   QSTHQTRFLRSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGD 61

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-------- 395
           Y  N Q    I   N+ +  R+     + +GQ H++ GT     D I+   L        
Sbjct: 62  Y-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRVFDMIRRRSLRTRAIKML 114

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEK-- 451
           +L   DE    G ++++    +   P   V+L++AT     L +T+    D  +I  K  
Sbjct: 115 VLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD 174

Query: 452 PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGKKAYWICPQIEEKKESN 499
               + IK   + + R +   + L             +  +  +K  W+    E+ +E+N
Sbjct: 175 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWL---TEKMREAN 231

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           F                +++ +HG M   ++ES+M  F++G  ++LI+T V   G+DV  
Sbjct: 232 F----------------TVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQ 275

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGR 585
            S+II  +  +     +H++ GR GR
Sbjct: 276 VSLIINYDLPNNRELYIHRI-GRSGR 300


>gi|255555929|ref|XP_002519000.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223541987|gb|EEF43533.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 534

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 65/316 (20%), Positives = 132/316 (41%), Gaps = 48/316 (15%)

Query: 302 VGSGKTLVALIAM----------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            GSGKTL   I            A+A       +++AP   LA Q    ++   +   + 
Sbjct: 160 TGSGKTLAYGIPAVMHVLSKRKGASANSVNPLCLVLAPTRELADQISVVLRDAGEPCGVR 219

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRF 406
              + G   +  +  +L+        I+I T    +D I+       ++  +++DE  R 
Sbjct: 220 SVCLYGGTSKGPQISSLK----SGVDIVIATPGRLKDLIEMNICHLMEVSFLVLDEADRM 275

Query: 407 ---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G +Q ++  L++  +A  +++ +AT  P          +D+  + E+   R PIK V
Sbjct: 276 LDMGFRQEVRSILSKTCSARQMIMFSAT-WP----------LDVHNLAEEYMDRNPIKVV 324

Query: 462 I-----IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN------FRSVVERFNSL 510
           +        + + +++E L   L + K+   +  +  + + +       ++   ER + +
Sbjct: 325 VGSEDTAANHDVMQIVEVLDDHLRD-KRLLALLEKYHKTQRNRVLVFALYQKEAERLDGM 383

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 ++  IHG  +   +   +  FK G+C L++AT V   G+DV D  ++I  +   
Sbjct: 384 LHRSGWNVVSIHGNKAQEQRTKALSLFKKGSCPLMVATDVAARGLDVPDVEVVINYSFPL 443

Query: 571 FGLAQLHQLRGRVGRG 586
                +H++ GR GR 
Sbjct: 444 TTEDYVHRI-GRTGRA 458


>gi|191638613|ref|YP_001987779.1| Primosomal replication protein N (Factor Y) [Lactobacillus casei
           BL23]
 gi|190712915|emb|CAQ66921.1| Primosomal replication protein N (Factor Y) [Lactobacillus casei
           BL23]
 gi|327382655|gb|AEA54131.1| DNA replication factor Y [Lactobacillus casei LC2W]
 gi|327385849|gb|AEA57323.1| DNA replication factor Y [Lactobacillus casei BD-II]
          Length = 805

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 19/179 (10%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q + + +P +P   Q++ +  I   +++++    +L+G  GSGKT V L  +A  + AG 
Sbjct: 261 QPLTKPLPLTP--EQQTIVTQINAAVAERDPKTFLLEGVTGSGKTEVYLQVIAQVLAAGQ 318

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   L  Q    + +        V ++   +    +     RIA G+A +++G 
Sbjct: 319 TALMLVPEIALTPQ---MVNRVKGRFGTHVAVMHSGLSDGEKYDEWRRIARGEAQVVVGA 375

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATP 430
            +     ++   + + I+DE+H    +Q            LK  Q   AP V+L +ATP
Sbjct: 376 RSAAFAPLK--NIGVFIMDEEHETSYKQDSAPRYHARDVLLKRAQIHHAP-VVLGSATP 431


>gi|168704554|ref|ZP_02736831.1| ATP-dependent RNA helicase [Gemmata obscuriglobus UQM 2246]
          Length = 523

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 136/334 (40%), Gaps = 43/334 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----GGQAVIM 327
           +PT  QE+ I   L+          I Q   G+GKT   LI            G   V+M
Sbjct: 108 NPTPIQENVIPPALRGKDV------IGQAQTGTGKTAAFLIPFLNRWRPHTLKGPIGVVM 161

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LA Q     +K   + +     + G       ++ L+ +  G   +++GT     
Sbjct: 162 TPTRELALQIANEAEKLAPSKRFRCVPVYGG---TGMQRQLDGLTRG-CDLVVGTPGRML 217

Query: 388 DSIQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVL 437
           D +Q   + L      ++DE  R    G +  ++  L +  +    LLM+AT +P +   
Sbjct: 218 DHLQRGSMSLSQVRYAVLDEADRMLDIGFRDDIERILKRCPSERQTLLMSAT-VPDS--- 273

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                  I ++  +   R P+   ++P     + I +    + + +K   +   +E +K 
Sbjct: 274 -------IKRLVNR-YMRDPVHLHMMPEKPTVDKIRQSYFTVDQDRKFELLKRVVEREKP 325

Query: 498 SNFRSVVER---FNSLHEHFTSSI---AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                 VER    ++L+     ++   A+IHG +    +E +M +F+    K LIAT V+
Sbjct: 326 RQCLIFVERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAFRTADIKYLIATDVM 385

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
             GIDV   S +I  +        +H++ GR GR
Sbjct: 386 SRGIDVSGLSHVINYDLPMDIENYVHRI-GRTGR 418


>gi|59713736|ref|YP_206511.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481984|gb|AAW87623.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 460

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 139/359 (38%), Gaps = 66/359 (18%)

Query: 302 VGSGKTLVALIAM-------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  ++ M        +  +   +AVI+AP   LA+Q Y  ++           +
Sbjct: 62  TGSGKTLAFVLPMLHKSLKTKSFSKNDPRAVILAPTRELAKQVYSHLRAMLGGLTYDATL 121

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---F 406
           ITG      +  AL +        I+ T     D +++  L L     +I+DE  R    
Sbjct: 122 ITGGENFNDQVNALRK----HPKFIVATPGRLADHLEHQSLYLDGLETLILDEADRMLDL 177

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           G  + L+   KA A H          +TL+ ++  D D      K AG           N
Sbjct: 178 GFAEHLQKIHKA-ASHRR-------RQTLMFSATLDHD---AVNKFAG-----------N 215

Query: 467 RIDEVIERLKVVLSEGK-----KAYWICPQIEEKK---------ESNF--------RSVV 504
            +D   +R+ V LS  +     + +++C  ++ K+         E  F        RS  
Sbjct: 216 MLDNP-KRISVGLSNDEHKDITQRFYLCDHLDHKQAILNKIIETEDYFQIMIFTATRSDT 274

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +R   L          + G M+   + ++M  F+    K+L+ T V   G+D+   + +I
Sbjct: 275 DRLTKLLNEENLKAVALSGDMNQTARNNIMSQFERRVHKILVTTDVASRGLDLTSVTHVI 334

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
             +        +H++ GR GR  +  + I L  P     S+ R+      +  F + EE
Sbjct: 335 NFDMPKHMEEYVHRV-GRTGRAGKKGTAISLVGPK-DWESFKRVETFLQQDLSFSVFEE 391


>gi|15644875|ref|NP_207045.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 26695]
 gi|2313340|gb|AAD07315.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Helicobacter
           pylori 26695]
          Length = 492

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 142/348 (40%), Gaps = 47/348 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++     +A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G       +K  E I      ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQ---SVKKQCEFIKKN-PQVMIATPGRLLDH 151

Query: 390 IQY---YKLI--LVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT---PIPRTLV 436
           ++    +K +  +V++DE         L   ++      +   +LL +AT   PI R   
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKR--- 208

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE-- 494
              L D    KI E P     IK  I P N  +  I +   V++E ++A  I   ++   
Sbjct: 209 ---LAD----KILENP-----IKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256

Query: 495 -KKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            KK   F    +  + LH+   S       +HG M   D+ S + +FK     +L+AT V
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|326430586|gb|EGD76156.1| DEAD box polypeptide 17 isoform 2 [Salpingoeca sp. ATCC 50818]
          Length = 629

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 123/291 (42%), Gaps = 43/291 (14%)

Query: 302 VGSGKTLV----ALIAMAAAVEAG-GQA--VIMAPIGILAQQHYEFIKKYTQ--NTQIIV 352
            GSGKTL      L+ +AA    G G+   ++++P   LA Q  + +    +  NT + V
Sbjct: 256 TGSGKTLAFGLPGLVHVAARGTPGRGRPFMLVISPTRELAMQTGKVLSDAGKGMNTPLNV 315

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF- 406
           + I G    A RR+ ++ +     H+I+ T     D     SI    +   ++DE  R  
Sbjct: 316 QCIFGG---AQRREQMDAM-RKPVHVIVATPGRLLDLCEAGSIDLSAVTFNVLDEADRML 371

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVI- 462
             G ++ +K           +M   P PR T++ ++    ++ +I +    R P+K  + 
Sbjct: 372 DMGFERDIKR----------IMAQMPTPRQTVMFSATWPQEVRRIAKDYLNR-PVKVTVG 420

Query: 463 ----IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-----SNFRSVVERFNSLHEH 513
                    + +++E +      G+    +    + +K      + ++    R     ++
Sbjct: 421 SDDLAASKNVTQIVEVIDPKQKNGRLLDLLRKYHKSRKNKVLVFALYKKEAARLEQFLQY 480

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +   IHG +S  D+  V+  FK+G   L+IAT V   G+DV D   +I
Sbjct: 481 KGYNTKAIHGDLSQGDRNRVLQEFKSGEVPLMIATDVAARGLDVPDVEYVI 531


>gi|325695221|gb|EGD37122.1| primosome assembly protein PriA [Streptococcus sanguinis SK150]
          Length = 795

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I Q + Q +    +L+G  GSGKT V L  +A A+  G  A+++ P I +  Q
Sbjct: 262 QAAAVAAITQKIGQSHSQPVLLEGVTGSGKTEVYLQVIAEALAQGKTAIMLVPEISLTPQ 321

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               FI ++       V I+   +    +     ++  G A +++G   A+F        
Sbjct: 322 VTDRFISRFGDQ----VAILHSGLSDGEKYDEWRKVERGAAQVVVGARSAIF---APLTN 374

Query: 395 LILVIVDEQHRFGVQQ 410
           +  +I+DE+H    +Q
Sbjct: 375 IGAIIIDEEHESSYKQ 390


>gi|302327750|gb|ADL26951.1| primosomal protein N' [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 684

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 21/185 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  QE+A+  +++D+ +      +L G  GSGKT V    +  A++   + +I+ P IG+
Sbjct: 158 TGEQETALASLVEDLDKDGFRGTLLHGVTGSGKTRVYQELVREALKRNKRVLILVPEIGL 217

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
             Q       ++    ++ V ++   +    +R     +  G A +++GT +     +  
Sbjct: 218 TPQT----ASRFEDYLKVPVVVLHSALSAPQKRAGYLAVLDGSAKVVLGTRSAI---LSP 270

Query: 393 YKLILVIVDEQHRFGVQQR------------LKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           +   +VI+DE+H    +Q+              L QK  A  V+L +ATP   T      
Sbjct: 271 FDFDVVILDEEHDSSFKQQDPAPRYHTRDLAFHLAQKYGA-LVVLGSATPCLETFRNAKA 329

Query: 441 GDIDI 445
           G++ +
Sbjct: 330 GNLKL 334


>gi|218700063|ref|YP_002407692.1| ATP-dependent RNA helicase DbpA [Escherichia coli IAI39]
 gi|218370049|emb|CAR17825.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           IAI39]
          Length = 457

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 127/326 (38%), Gaps = 56/326 (17%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPSIEQ 218

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                  K  I  + R+        + L +       C       + + ++V +  N + 
Sbjct: 219 QFYETSSKGKIPLLQRL--------LSLHQPSSCVVFC-----NTKKDCQAVCDALNDIG 265

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +   S    +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++ N E  
Sbjct: 266 QSALS----LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELVVNFELA 319

Query: 572 GLAQLHQLR-GRVGR----GEEISSC 592
              ++H  R GR  R    G  IS C
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|242019547|ref|XP_002430222.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212515318|gb|EEB17484.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 763

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 123/317 (38%), Gaps = 51/317 (16%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   +  M   +          G   +I+AP   L+QQ Y   KK+ +   I V 
Sbjct: 315 TGSGKTAAFVWPMLIHIMDQKELKPGDGPIGLILAPTRELSQQIYSEAKKFGKVYNIQVI 374

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRF-- 406
              G   +  + KALE      A I++ T     D I+       ++  +++DE  R   
Sbjct: 375 CCYGGGSKWEQSKALEN----GAEIVVATPGRMIDLIKMKATNLKRVTFLVLDEADRMFD 430

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + +++       P    LL +AT   +   L  +   D            PI+ V  
Sbjct: 431 MGFEPQVRSICNHVRPDRQTLLFSATFKKKVERLARVVLTD------------PIRIVQG 478

Query: 464 PINRIDE-VIERLKVVLSEGKKAYWICPQIEE-----------KKESNFRSVVERFNSLH 511
            +   +E VI+ + ++ ++  K  W+   I E            K+ N   V      L 
Sbjct: 479 DVGEANEDVIQNVLILPNQAAKFMWLTSHIVEFLSNGSLLIFVTKKVNAEEVANNL-KLK 537

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E     + ++HG M  I++  V+  FK     +L+AT V   G+D+     ++  +    
Sbjct: 538 EF---DVLLLHGDMDQIERNKVITQFKKKEVSILVATDVAARGLDIPHIKTVVNYDIARD 594

Query: 572 GLAQLHQLRGRVGRGEE 588
                H++ GR GR  E
Sbjct: 595 IDTHTHRI-GRTGRAGE 610


>gi|30262474|ref|NP_844851.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47527766|ref|YP_019115.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185310|ref|YP_028562.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|167632590|ref|ZP_02390917.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170687052|ref|ZP_02878271.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|227814717|ref|YP_002814726.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|30257105|gb|AAP26337.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47502914|gb|AAT31590.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49179237|gb|AAT54613.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|167532888|gb|EDR95524.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170669103|gb|EDT19847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|227002434|gb|ACP12177.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
          Length = 450

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT IP+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-IPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|323441287|gb|EGA98955.1| late competence operon protein FA [Staphylococcus aureus O46]
          Length = 317

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 142/335 (42%), Gaps = 74/335 (22%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-- 354
           +L    G+GKT +    +  A   G    I++P                    ++VEI  
Sbjct: 6   LLYAVTGAGKTEMMFQGIQYARRQGDNIAIVSP-----------------RVDVVVEISK 48

Query: 355 ------ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF-- 406
                 +  N+   H++ + +   H    ++   H L++    +     + +DE   F  
Sbjct: 49  RIKDAFLNENIDILHQQSSQQFEGH---FVVCTVHQLYRFKRHFDT---IFIDEVDAFPL 102

Query: 407 ----GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
                +QQ LK + K      + MTATP P+ L    L +I    I + PA R   K++ 
Sbjct: 103 SMDKSLQQALKSSSKVEHA-TIYMTATP-PKQL----LSEIPHENIIKLPA-RFHKKSLP 155

Query: 463 IPI--------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNS 509
           +P         N+I +++ R+            +  QI +++ +     N  ++++ F S
Sbjct: 156 VPKYRYFKLNNNKIQKMLYRI------------LQDQINKQRYTLVFFNNIEAMIKTF-S 202

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           +++H  + +  +H    D+ +   ++  +NG   ++  TT++E G  + +  +++I+ A 
Sbjct: 203 VYKHKITKLTYVHS--EDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVID-AH 259

Query: 570 HFGLAQLHQLRGRVGRGEEI-SSCILLYHPPLSKN 603
            +    L Q+ GRVGR  E  +  +L +H  +S N
Sbjct: 260 QYTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMN 294


>gi|322392345|ref|ZP_08065806.1| primosome assembly protein PriA [Streptococcus peroris ATCC 700780]
 gi|321144880|gb|EFX40280.1| primosome assembly protein PriA [Streptococcus peroris ATCC 700780]
          Length = 798

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++ +     V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDMGKTAIVLVPEISLTPQMTERFIARFGEQ----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--DLGVIIIDEEHEASYKQ 393


>gi|239637375|ref|ZP_04678357.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
 gi|239596975|gb|EEQ79490.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
          Length = 509

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 136/335 (40%), Gaps = 68/335 (20%)

Query: 299 QGDVGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           Q   G+GKT    I +   V  E G Q++I+AP   LA Q  E +K +++   + V  + 
Sbjct: 45  QAQTGTGKTGAFGIPLIEKVVGEQGVQSLILAPTRELAMQVAEQLKVFSKGQNVQVVTVF 104

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGV 408
           G MP   + KAL++       I++GT     D +          + LIL   DE    G 
Sbjct: 105 GGMPIERQIKALKK----GPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGF 160

Query: 409 QQRLKLTQK---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
              ++       A     +L +AT +P                       K I+T++   
Sbjct: 161 IDDMRFIMDKIPAEQRQTMLFSAT-MP-----------------------KAIQTLVQQF 196

Query: 466 NRIDEVIERLKVVLSEGK--KAYWICPQIEE-KKESNFRSVVE--------RFNSLHEHF 514
            +  ++I+ +   +S+ +  + Y I  ++E+    +NF  V +        R     +  
Sbjct: 197 MKTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDEL 256

Query: 515 TSSI-------AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII---- 563
           TS++         +HG ++   +  V+  FKN    +L+AT V   G+D+   S +    
Sbjct: 257 TSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFD 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           I ++ E +     H++ GR GR  +    +   +P
Sbjct: 317 IPQDTESY----THRI-GRTGRAGKEGIAVTFVNP 346


>gi|222096052|ref|YP_002530109.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|221240110|gb|ACM12820.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
          Length = 451

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 138/318 (43%), Gaps = 53/318 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 43  IGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINV 102

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 103 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 158

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+ +   +   +D  ++ +  +    + T+ 
Sbjct: 159 YFGFLYDIEDILDETPDSKQTMLFSAT-MPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIE 217

Query: 463 IPINRIDEVIER-----LKVVLSEGKK--AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
               R+ E  +R     L+ V+   +   A   C           R+ V R + L+++  
Sbjct: 218 ---QRVIETTDRAKPDALRFVMDRDQPFLAVIFC-----------RTKV-RASKLYDNLK 262

Query: 516 S---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENA 568
               + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ 
Sbjct: 263 GLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDV 322

Query: 569 EHFGLAQLHQLRGRVGRG 586
           E +    +H++ GR GR 
Sbjct: 323 ESY----IHRI-GRTGRA 335


>gi|217073428|gb|ACJ85073.1| unknown [Medicago truncatula]
          Length = 369

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 120/304 (39%), Gaps = 47/304 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQMEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++ G                G+   ++   +L  D I+ +  +L   DE    G + ++ 
Sbjct: 141 VVVGT--------------PGRVFDMLRRQSLRSDCIKMF--VLDEADEMLSRGFKDQIY 184

Query: 414 LTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
              +   P   V + +AT  P  L +T        K   KP        V I + R +  
Sbjct: 185 DIFQLLPPKIQVGVFSATMPPEALEITR-------KFMNKP--------VRILVKRDELT 229

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEHFTSSIAII 521
           +E +K       K  W    + +  E+          N R  V+           +++  
Sbjct: 230 LEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSAT 289

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +        LH++ G
Sbjct: 290 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRI-G 348

Query: 582 RVGR 585
           R GR
Sbjct: 349 RSGR 352


>gi|184155910|ref|YP_001844250.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
 gi|260662837|ref|ZP_05863731.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
 gi|183227254|dbj|BAG27770.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
 gi|260552918|gb|EEX25917.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
          Length = 442

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 128/313 (40%), Gaps = 50/313 (15%)

Query: 302 VGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GSGKTL     +   V    G Q +++ P   LA Q    ++++     + V   TG  
Sbjct: 43  TGSGKTLAFTWPLLPKVMKGQGTQILVLEPSQELALQTTRVMREWAALLGLKVHSATGG- 101

Query: 360 PQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQR 411
             A+ R+  ER+   +  +++GT     H L    ++   L  +++DE     R   Q  
Sbjct: 102 --ANLRRQTERLKKERPEVVVGTPGRILHLLDTRDLKLNNLATLVIDEADDLLRDDTQAV 159

Query: 412 LKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISKITEKPA--GRKPIKTVIIPINR 467
           ++  ++AT     +   +AT       L  L   D+ KI  +     R P+K  ++    
Sbjct: 160 VEDIERATPLDTQLAFFSATQSTTLEQLDVLFGRDLVKIDVRAQDHSRGPVKHGLVVART 219

Query: 468 IDE---VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE-HFTSS------ 517
           + +   ++ERL                    +  NFR++V  F S+   H+T+S      
Sbjct: 220 MSDKAVMLERLS-------------------QTKNFRALV-FFTSIKTLHYTASRLRHDG 259

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
              A + GR    ++E+VM  F+    KLL+ T V   G+D+     ++     +     
Sbjct: 260 ISSATLGGRQRQTERETVMRQFRKHQVKLLLTTDVAARGLDIPKLPAVVNFELPNTADGY 319

Query: 576 LHQLRGRVGRGEE 588
           +H+  GR GR  E
Sbjct: 320 VHRT-GRTGRQGE 331


>gi|149192500|ref|ZP_01870684.1| RhlE [Vibrio shilonii AK1]
 gi|148833665|gb|EDL50718.1| RhlE [Vibrio shilonii AK1]
          Length = 397

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 158/361 (43%), Gaps = 44/361 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQAV 325
           PT  Q  AI  +L+  +       I     G+GKT   ++ +   + AG        +A+
Sbjct: 24  PTTIQTKAIPIVLKGSN------LIAAAQTGTGKTASFVLPILERLSAGQTERKKRARAI 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  + I+ Y Q T I    + G +  A +++AL         I++ T   
Sbjct: 78  ILTPTRELALQVNQSIEAYAQFTSIKSMAMFGGVDYAPQKQAL----IDGVDIVVATPGR 133

Query: 386 F-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-----PHVLLMTAT---PIP 432
                 Q +I + ++  +++DE  +      ++   K  A        LL +AT   P+ 
Sbjct: 134 LIDLYGQRAIHFDEVETLVLDEADKMLDMGFIEAINKIIARVPEDAQSLLFSATLSNPV- 192

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R L  +++ + +   IT+  A +  IK  I+ +++ D     L  +L + +    +    
Sbjct: 193 RDLAKSAIDNPEEIAITKHSASKSNIKQWIVTVDK-DMKSSLLSHLLQQNQWKQALIFIE 251

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            +   +   S +E+     E F S      GR   + ++ +++SFK G  + L+AT V  
Sbjct: 252 TKHGAAKLVSQLEKRGIAAEAFHS------GRNQKV-RQQLIESFKAGEIQYLVATGVAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+ +  ++I  +  +     +H++ GR GR +     + L    +SK+++  L +++
Sbjct: 305 RGIDIENLPVVINYDLPYPADEYVHRI-GRTGRADAAGEALSL----VSKDNFKNLCMIE 359

Query: 613 N 613
           +
Sbjct: 360 S 360


>gi|313202794|ref|YP_004041451.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312442110|gb|ADQ78466.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 453

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 150/365 (41%), Gaps = 51/365 (13%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + +   I Q +  N   +PT  Q  AI  IL   S  + ++ + Q   G+GKT    I +
Sbjct: 6   LGINDDIIQALDGNNISTPTDIQLQAIPHIL---SHTSDLVAVAQ--TGTGKTAAFSIPI 60

Query: 315 AAAVEA---GGQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
             +V       QA+++ P   L QQ    +    KY   +++  E + G  P   + + L
Sbjct: 61  LQSVNPLLPQIQALVLVPTRELGQQVAREFFLFSKYL--SRVFAEAVYGGAPIEDQIQKL 118

Query: 369 ERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
           +R  H      G+   ++   AL  D ++Y  L+L   DE    G +  +    ++   +
Sbjct: 119 KRPTHVVVATPGRLIDLLERKALSLDHLKY--LVLDEADEMMNMGFKDGIDRILESCNKN 176

Query: 423 V--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           +  +L TAT +P           D+  I  K       +  I     I+  IE   ++  
Sbjct: 177 ITKMLFTAT-MP----------ADVKHIISKYLRPGFAEIHINAEEFINRNIEHSYLLYK 225

Query: 481 EGKKAYWI----CPQIEEKKESNFRSVVE--RFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           +G+K  ++        +E+  +  R+ ++  R          S   +HG ++   ++ VM
Sbjct: 226 QGEKLEYLKAFLSGHADERGIAFCRTKLDAKRLAKQLAGCIVSADALHGNLNQEMRDKVM 285

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL----AQLHQLRGRVGRGEE-- 588
            +FK G+  LL+AT +   GIDV D   I+     H+ L     Q     GR  R  +  
Sbjct: 286 RAFKRGSINLLVATDIAARGIDVKDLDYIV-----HYSLPEKTEQYTHRSGRTARAGKSG 340

Query: 589 ISSCI 593
           IS C+
Sbjct: 341 ISVCL 345


>gi|310790707|gb|EFQ26240.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 733

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 129/335 (38%), Gaps = 63/335 (18%)

Query: 302 VGSGKTLVALIAMAAAVEA-----------GGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            GSGKT   L+ +   ++            G  A+I+AP   L QQ      K+      
Sbjct: 336 TGSGKTAAFLLPLLTYIQDLPPLTEINKNDGAYALILAPTRELVQQIETEAHKFADPLGF 395

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
            V  I G      +  AL R     A II+ T     D I+   L+L     VI+DE  R
Sbjct: 396 NVVSIVGGHSLEEQVHALSR----GAEIIVATPGRLVDCIERRLLVLSQCCYVIMDEADR 451

Query: 406 ---FGVQQRLKLTQKA-----------TAPHVLLMT----ATPIPR-TLVLTSLGDIDIS 446
               G ++ +     A            A +  LM     AT   R T++ T+     + 
Sbjct: 452 MIDLGFEESVNKILDALPVSNEKPDTDDAENAQLMQKYLGATDRYRQTMMYTATMPPTVE 511

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---------AYWICP------Q 491
           KI  K   R  I T+      ++ V +R++ V  E KK         A    P       
Sbjct: 512 KIARKYLRRPAIVTIGNAGEAVETVEQRVEFVSGEDKKKKRLQEILGAGDFAPPIIVFVN 571

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           I+   ++  R V        +    S   +HG  +   +E+ + S +NG  ++L+AT + 
Sbjct: 572 IKRNCDAVARDV--------QRMGYSAVTLHGSKTQEQREAALASVRNGQTQVLVATDLA 623

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             GIDV D S++I  N      +  H++ GR GR 
Sbjct: 624 GRGIDVPDVSLVINFNMATNIESYTHRI-GRTGRA 657


>gi|299145404|ref|ZP_07038472.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_23]
 gi|298515895|gb|EFI39776.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_23]
          Length = 444

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 142/374 (37%), Gaps = 60/374 (16%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           +I Q  LRN+        + A   + Q   +K+    IL    GSGKTL  L+ +   ++
Sbjct: 6   EIIQSALRNLKIEELNPMQEA--SLEQATGRKDV---ILLSPTGSGKTLAYLLPLLLTLK 60

Query: 320 AGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 Q +I+ P   LA Q     K     T        G  P A  +K+   I     
Sbjct: 61  PNDDSVQVLILVPSRELALQIDSVFK--AMGTSWKTCCCYGGHPIAEEKKS---ILGNHP 115

Query: 377 HIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLM 426
            IIIGT     D +            LI+   D+   FG    +   +TQ       +L+
Sbjct: 116 AIIIGTPGRITDHLSKGNFNPETIETLIIDEFDKSLEFGFHDEMAEIITQLPGLKKRMLL 175

Query: 427 TATP---IP------RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-NRIDEVIERLK 476
           +AT    IP      RT+ L  L D      +E+   R  +  V+ P  ++ID +   L 
Sbjct: 176 SATDAAEIPEFTGLNRTVKLNFLSDD-----SEEQESRLKLMEVLSPSKDKIDTLYNLLC 230

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            + S     +            N R  V+R + L           HG M   D+E  +  
Sbjct: 231 TLGSASSIVF-----------CNHRDAVDRVHQLLADKKLLAERFHGGMEQPDRERALYK 279

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL-----AQLHQLRGRVGRGEEISS 591
           F+NG+C +LI+T +   G+D+ +   II     H+ L     A  H+  GR  R +   +
Sbjct: 280 FRNGSCHVLISTDLAARGLDIPEVGHII-----HYHLPVNEEAFTHR-NGRTARWDATGT 333

Query: 592 CILLYHPPLSKNSY 605
             L+ H      SY
Sbjct: 334 SYLILHAEEKLPSY 347


>gi|290988185|ref|XP_002676802.1| predicted protein [Naegleria gruberi]
 gi|284090406|gb|EFC44058.1| predicted protein [Naegleria gruberi]
          Length = 649

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           +++ FKN  CKLL++T+V+E GID+ D +I+++ +  +  L ++ Q RGR
Sbjct: 564 LIEEFKNHECKLLVSTSVLEEGIDISDCNIVVLFDG-NLSLRRIIQARGR 612


>gi|228960084|ref|ZP_04121748.1| Primosomal protein N' [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229047555|ref|ZP_04193145.1| Primosomal protein N' [Bacillus cereus AH676]
 gi|229111339|ref|ZP_04240892.1| Primosomal protein N' [Bacillus cereus Rock1-15]
 gi|228672115|gb|EEL27406.1| Primosomal protein N' [Bacillus cereus Rock1-15]
 gi|228723802|gb|EEL75157.1| Primosomal protein N' [Bacillus cereus AH676]
 gi|228799600|gb|EEM46553.1| Primosomal protein N' [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 767

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA ++ G +A+++ P
Sbjct: 228 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLKKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|167625498|ref|YP_001675792.1| ATP-dependent RNA helicase DbpA [Shewanella halifaxensis HAW-EB4]
 gi|167355520|gb|ABZ78133.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 469

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 134/325 (41%), Gaps = 47/325 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I QG  GSGKT    + +   ++      Q +++ P   LA Q  + I+   +    I V
Sbjct: 53  IGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLCPTRELADQVAKEIRTLARGIHNIKV 112

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P   +  +LE   HG AHII+GT     D +   +L L     +++DE  R  
Sbjct: 113 LTLCGGVPMGPQIGSLE---HG-AHIIVGTPGRIIDHLDRGRLDLENVHTLVLDEADRML 168

Query: 407 ---------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD-IDISKITEKPAGRK 456
                    G+ +R+ + ++      LL +AT  P  +   S+ D I    +  K A   
Sbjct: 169 EMGFQVELEGIMERMPIERQ-----TLLFSAT-FPEQI--QSIADKIMFKPVMVKVASSH 220

Query: 457 PIKTV---IIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSLH 511
              T+      +   ++ +  LK++L + +   A   C    E K+   +   + F    
Sbjct: 221 ATSTIEQHFYEVGNNNDRMRALKLLLLQYRPESAVVFCNTKRETKDVAAQLKNDGF---- 276

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                S+  +HG +   D++  +  F N +  +++AT V   G+D+     +I  +  + 
Sbjct: 277 -----SVVALHGDLEQRDRDQTLLQFANKSVSIMVATDVAARGLDIDALDAVINYHVAYD 331

Query: 572 GLAQLHQLRGRVGRGEEISSCILLY 596
               +H++ GR GR     S    Y
Sbjct: 332 TEVHIHRI-GRTGRAGSKGSAHTFY 355


>gi|153940560|ref|YP_001390343.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum F str.
           Langeland]
 gi|152936456|gb|ABS41954.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum F str.
           Langeland]
 gi|295318432|gb|ADF98809.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum F str.
           230613]
          Length = 709

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++ + H  +SD +++   + F     ++++AT    +GID  +   +I  N     +   
Sbjct: 255 TVGVYHAGLSDEERKKTQEDFSFDNIEIIVATNAFGMGIDKSNVRFVIHHNIPK-NMEAY 313

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           +Q  GR GR  E S CILL+ P
Sbjct: 314 YQEAGRAGRDGEESECILLFSP 335


>gi|146092266|ref|XP_001470248.1| mitochondrial DEAD box protein [Leishmania infantum]
 gi|134085042|emb|CAM69443.1| putative mitochondrial DEAD box protein [Leishmania infantum JPCM5]
 gi|322500550|emb|CBZ35627.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 544

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 121/312 (38%), Gaps = 39/312 (12%)

Query: 302 VGSGKTLV----ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            GSGKT+     AL       +     +++AP   L QQ  +  +        + E   G
Sbjct: 139 TGSGKTVAFAVPALAGFKPNPDGTPSVLVLAPTRELVQQTTKVFQNLGCGQVRVCEAYGG 198

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHAL--FQDS--IQYYKLILVIVDEQHRF---GVQQ 410
               A R     R+ +G   ++     L  F D   +    L  ++ DE  R    G Q 
Sbjct: 199 ----APRDLQARRLRNGCDALVACPGRLKDFLDGGDVSIRNLSFLVFDEADRLLDMGFQV 254

Query: 411 RLK----LTQKATAPHVLLMTATPIPRT---LVLTSLGDIDISKITEKPAG-----RKPI 458
            L         A+ P  ++ +AT  P +   +    L D D   I    AG      + I
Sbjct: 255 HLDEIMAYLGSASHPQTMMWSAT-WPESVQEMARKYLSD-DRVLIRAGTAGAGLQVNEHI 312

Query: 459 KTVIIPINRIDEVIERLKVVLSEG-----KKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           K  +I      E IE+L  ++ +G     K    I  + +   E+  R+   R       
Sbjct: 313 KQELIFCRTFTERIEKLGSLVEDGTIDDNKDKLIIFVERQADTENTARAFSHRLGI---- 368

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
            T  +  IHG +S   ++ VM  FKN   +LL+AT V   G+D+ D + ++   A     
Sbjct: 369 DTRYVGTIHGGLSQRQRDRVMSMFKNNHIRLLVATDVASRGLDIPDVTCVVNFQAPKTID 428

Query: 574 AQLHQLRGRVGR 585
           +  H++ GR GR
Sbjct: 429 SYCHRI-GRTGR 439


>gi|15606049|ref|NP_213426.1| ATP-dependent RNA helicase DeaD [Aquifex aeolicus VF5]
 gi|2983229|gb|AAC06826.1| ATP-dependent RNA helicase DeaD [Aquifex aeolicus VF5]
          Length = 293

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 117/289 (40%), Gaps = 43/289 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++Q   G+GKT    + +  +++ G +A+I+AP   LA Q  +  + + +   +      
Sbjct: 13  LIQAKTGTGKTAAFGLPILNSLKEGEKALILAPTRELALQIRDNFRDFARYLNVRTFAFY 72

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQHRF 406
           G        K L     G+  ++IGT           AL  D ++Y+ L  V V     F
Sbjct: 73  GGTKVFGDLKVLR---GGKVDVVIGTPGRIKDLIERGALKTDDVRYFVLDEVDVMLDMNF 129

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK--------PI 458
                   +Q      V  ++AT  P+ +   S       + T+KP   K         I
Sbjct: 130 KEDIDFIYSQLPEEKQVFFVSAT-FPKEVRELS------HRYTKKPEFIKVESRELEPQI 182

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS- 517
           +  ++ +  I E IE L+ VL +  K       +  K+++ F         L E  ++  
Sbjct: 183 EERLLRVYSIREKIELLEDVLRDFNKVIVF---VNRKRDAKF---------LGEKLSTKG 230

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             +  +HG +    +E ++  F+ G   +L+AT V   G+D+ +   ++
Sbjct: 231 FRVGALHGDLPQRRREEILKKFRRGFINVLVATDVASRGLDISEVEAVV 279


>gi|327403899|ref|YP_004344737.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327319407|gb|AEA43899.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 375

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 133/339 (39%), Gaps = 47/339 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  QE +I  +LQ       +    Q   G+GKT    + +   ++  GQ        
Sbjct: 23  TPTPIQEQSIPSLLQGKD----LFGCAQ--TGTGKTAAFALPILQHLDPDGQVKGKRPIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +  K Y +++++   +I G + Q    K + ++  G   I++ T 
Sbjct: 77  CLVLAPTRELANQINDSFKSYGKHSKLRSMVIFGGVNQ---NKQVNQLNAG-IDILVATP 132

Query: 384 A-----LFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPR 433
                 + Q  IQ  K+   ++DE  R    G    +K  L +       +  +AT  P 
Sbjct: 133 GRLLDLMNQGHIQLSKITHFVLDEADRMLDMGFIHDIKKILPRLPKNKQNIFFSATISPT 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + L      D            P+   + P++   E++E+    + +  K  ++   I+
Sbjct: 193 IMELAGTILFD------------PVNVRVTPVSSTAEIVEQFVYYVEKADKRNFLKQLIK 240

Query: 494 EKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +  S+   F       + +    T S      IHG  S   +E  +  FKN T   LIA
Sbjct: 241 TENISHAIVFTRTKHGADRVARELTKSGLKAEAIHGDKSQNARERALAGFKNRTVSFLIA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           T +   GID+     +I           +H++ GR GR 
Sbjct: 301 TDIASRGIDIDLLEYVINFEIPEVAETYVHRI-GRTGRA 338


>gi|307309898|ref|ZP_07589548.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|306909616|gb|EFN40110.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|315060597|gb|ADT74924.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           W]
 gi|323378840|gb|ADX51108.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
          Length = 457

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|163789554|ref|ZP_02183992.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
 gi|159875086|gb|EDP69152.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
          Length = 483

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 142/350 (40%), Gaps = 39/350 (11%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIM 327
           F PTK QE  I   L+          I++   GSGKT+   + +   V   E   Q +++
Sbjct: 26  FHPTKVQEEVIPLALEGKDV------IVESQTGSGKTVSYGVPLCETVDWEENKPQVLVL 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LA Q  E +    +  ++    + G      ++  L++    ++HI++GT     
Sbjct: 80  VPTRELAIQVKEDLMNIGRLKRVKATAVYGKASFDTQKSELKQ----KSHIVVGTPGRVL 135

Query: 388 DSIQ--YYK------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLT 438
           D +Q   +K      L+L   DE    G   +++           ++   P  R TL+ +
Sbjct: 136 DHLQKGTFKVEKIDCLVLDEADEMLNMGFADQVEA----------IINFLPAERQTLLFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE-EKKE 497
           +    +I +I      +     VI         I +  V + E KK   +   +  E  +
Sbjct: 186 ATMPKEIERIASFYMKQDKQSIVIETTELSKPKIIQSSVKVQEDKKEQQLLDLLTVENAD 245

Query: 498 SN--FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           S   F +  E  N+L+     +   I  IHG M   D+ SVMD F+ G  + L+AT V  
Sbjct: 246 SCMIFCNTQEAVNNLYTFLNKAGLPIDKIHGGMVQEDRFSVMDDFRQGRFRYLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            GID+ + + ++  +      + +H+  GR GR  +    + L  P   K
Sbjct: 306 RGIDIENVTHVVNFDVPVEKESFVHRT-GRTGRAGKTGMALTLVTPKEEK 354


>gi|146308743|ref|YP_001189208.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145576944|gb|ABP86476.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 447

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 146/348 (41%), Gaps = 53/348 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL-VALIAMAAAVEAGGQ------- 323
           +PT  Q  AI  +L     K R L +     G+GKT   AL  +      G Q       
Sbjct: 23  TPTPVQSQAIPAML-----KGRDL-MAAAQTGTGKTAGFALPLLQRLTLEGPQVASNAVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHII 379
           A+++ P   LA+Q  +  + Y Q+  +    + G +   PQ  + RK ++ +      ++
Sbjct: 77  ALVLVPTRELAEQVLQSFQAYGQHLPLSSYAVYGGVSINPQMMKLRKGVDVLVATPGRLL 136

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
                  Q+++++ +L  +++DE  R    G  + L            L +A P  R  +
Sbjct: 137 ---DLYRQNAVKFAQLQTLVLDEADRMLDLGFARELDE----------LFSALPKRRQTL 183

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           L S    D+ +       R P+   + P N   + +++  + + + +K+      ++EK+
Sbjct: 184 LFSATFSDVIRQMAGELLRDPVSVEVSPRNAAAKSVKQWLIPVDKKRKSELFLHLLQEKR 243

Query: 497 ESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                 F    +  + L +   +   S   IHG      +   ++ FK G  ++L+AT V
Sbjct: 244 WGQVLVFAKTRKGVDQLEQELLAMGVSADSIHGDKPQPSRLRALERFKAGEVQILVATDV 303

Query: 551 IEVGIDVVDASIIIIE----NAEHFGLAQLHQLRGRVGR----GEEIS 590
              G+D+ D  +++      NAE +    +H++ GR GR    GE +S
Sbjct: 304 AARGLDIDDLPLVVNLDLPINAEDY----VHRI-GRTGRAGSTGEAVS 346


>gi|12325365|gb|AAG52624.1|AC024261_11 photosystem II protein psbT, putative, 5' partial; 92652-90780
           [Arabidopsis thaliana]
          Length = 347

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 137/321 (42%), Gaps = 61/321 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT +  I++   V       Q ++++P   LA Q  + I+    +T I   
Sbjct: 18  IAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAH 77

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
              G        K LER      H + GT     D     S+Q   + L+++DE      
Sbjct: 78  ACIGGKSIGEDIKKLER----GVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLS 133

Query: 407 -GVQQRLKLTQKATAPH---VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            G++ ++    +A  PH   V L++AT +P+          +I ++TEK     P++ ++
Sbjct: 134 KGLKDQIYDVYRAL-PHDIQVCLISAT-LPQ----------EILEMTEKFM-TDPVRILV 180

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---------------FRSVVERF 507
            P    DE+         EG K Y++    EE K                  F +  ++ 
Sbjct: 181 KP----DELT-------LEGIKQYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCNTRQKV 229

Query: 508 NSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           + L E   SS   ++ +HG     +++ +M+ F++   ++LIA+ V   GIDV   S +I
Sbjct: 230 DWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVI 289

Query: 565 IENAEHFGLAQLHQLRGRVGR 585
             +  +     +H++ GR GR
Sbjct: 290 NYDIPNNPELYIHRI-GRAGR 309


>gi|24646066|ref|NP_524319.2| mutagen-sensitive 309 [Drosophila melanogaster]
 gi|17366114|sp|Q9VGI8|BLM_DROME RecName: Full=Bloom syndrome protein homolog; Short=Dmblm; AltName:
            Full=Mutagen-sensitive protein 309; AltName: Full=RecQ
            helicase homolog
 gi|7299503|gb|AAF54691.1| mutagen-sensitive 309 [Drosophila melanogaster]
          Length = 1487

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 9/80 (11%)

Query: 522  HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LH 577
            H  ++D D+ES    +  G  +++ AT    +GID  D   ++     H+ L +     +
Sbjct: 989  HAGLTDTDRESRQKDWLTGKMRVICATVAFGMGIDKPDVRFVL-----HYSLPKSIEGYY 1043

Query: 578  QLRGRVGRGEEISSCILLYH 597
            Q  GR GR  +++ CIL Y+
Sbjct: 1044 QEAGRAGRDGDVADCILYYN 1063


>gi|328881710|emb|CCA54949.1| ATP-dependent RNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 522

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 135/327 (41%), Gaps = 50/327 (15%)

Query: 299 QGDVGSGKTL---VALIAMAAA--VEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A    E+G   A+++ P   LAQQ  + +  Y    ++ +
Sbjct: 52  RGRTGSGKTLAFGLALLARTAGRRAESGAPLALVLVPTRELAQQVTDALTPYAAALRLRI 111

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRFG 407
             + G M  + +  AL R     A ++I T     D I     +  ++ + ++DE  +  
Sbjct: 112 TTVVGGMSISRQSSALRR----GAEVLIATPGRLHDLIDRGDCRLDQVAVTVLDEADQMA 167

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT------------EKPAGR 455
               L    K      LL    P  + L+ ++  D ++ ++             +  AG 
Sbjct: 168 DMGFLPQVTK------LLKQVEPGGQRLLFSATLDRNVDRLVKMFLDDPVVHSVDPSAG- 220

Query: 456 KPIKT----VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
             + T    V+  ++  D+    LK+   +G+   ++     + K S  R +V+R   L 
Sbjct: 221 -AVTTMEHHVLYVMDETDKKAVTLKIAARDGRTILFL-----DTKRSVDR-LVKRL--LA 271

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               +S   +HG  S   +   +D FK+G    L+AT V   GI V D  +++  +    
Sbjct: 272 NGVRASG--LHGGRSQPQRNRTLDQFKSGQVTTLVATNVAARGIHVDDLDMVVNVDPPMD 329

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHP 598
               LH+  GR  R  E  S   L  P
Sbjct: 330 HKDYLHR-GGRTARAGESGSVFTLVLP 355


>gi|325187369|emb|CCA21907.1| bloom syndrome protein putative [Albugo laibachii Nc14]
          Length = 590

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 23/140 (16%)

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           N L +H  S+    HG  S  D++ V  +++ G  +++ AT    +GI+  D   +I   
Sbjct: 427 NFLFDHGISA-DFYHGGQSKTDRQLVQQAWQRGHVRIVCATIAYGMGINKADVRFVI--- 482

Query: 568 AEHFGLAQ----LHQLRGRVGRGEEISSCILLYH-------------PPLSKNSYTRLSV 610
             H+ LA+     +Q  GR GR  + S CI+L++             P  +    TR   
Sbjct: 483 --HYSLAKSIEGYYQEAGRAGRDSQPSHCIVLFNDNDGYRLRRILSIPQKNMTRQTRALH 540

Query: 611 LKNTEDGFLIAEEDLKQRKE 630
           LKN ++  L  ++  + R++
Sbjct: 541 LKNLKEVVLYCQDKTRCRRQ 560


>gi|258620256|ref|ZP_05715295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM573]
 gi|258623978|ref|ZP_05718931.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM603]
 gi|258583772|gb|EEW08568.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM603]
 gi|258587614|gb|EEW12324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM573]
          Length = 422

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 131/329 (39%), Gaps = 32/329 (9%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I T
Sbjct: 83  RALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQLNHL----RGGVDILIAT 138

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      L L     +++DE  R      +   Q+      +L   +P+ +TL  
Sbjct: 139 PGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR------VLRRLSPLRQTLFF 192

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  I  +  +   R P++  + P N   E ++++   + + +K   +   I  K  
Sbjct: 193 SATFDSKIKAVAYRIM-RDPVEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNW 251

Query: 498 SN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F    +  ++L E           I+G  S   ++  +D FK G  + LIAT V 
Sbjct: 252 QQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVA 311

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH---PPLSK----- 602
             G+D+     ++  +        +H++ GR GR G    +  LL H   P L       
Sbjct: 312 ARGLDIAQLEQVVNYDMPFKAEDYVHRI-GRTGRAGLAGLAVSLLSHDEEPQLEAIERLL 370

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           N+      LK  E   ++ EE+  +R  G
Sbjct: 371 NTRLPQEWLKGFEPSPVVREENSPRRSSG 399


>gi|242021722|ref|XP_002431292.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212516560|gb|EEB18554.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 591

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 132/313 (42%), Gaps = 40/313 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQN-TQIIV 352
           I+Q   G+GKT V  I     +++     Q +I++P   ++ Q  + I    +N   + V
Sbjct: 66  IVQAKSGTGKTCVFTIVALEMMDSDSDNLQVLILSPTREISVQIKDVISAIGKNFKNLKV 125

Query: 353 EIITGNMPQAHRRKALERI-----AHGQAHIIIGTHALFQDSIQYYKLILV--IVDEQHR 405
               G MP    +K +++      A G+   +I   ++  DSI+ + L     +++E  R
Sbjct: 126 SAFIGGMPLVTDKKNIKKCQIAVGAPGRVKHLIEEGSMKVDSIRLFVLDEADKLMEESFR 185

Query: 406 FGV--------QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
             +        +++  +   AT P  L    T    + +  S+GD+ +  I +  +    
Sbjct: 186 NDISFIYLQLPKEKQMIATSATFPPALNEFVTRFMISPIRISVGDVFLKGIRQFVS---- 241

Query: 458 IKTVIIP-----INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
               IIP     +N+I   +  +  +L   K ++  C        SN++S  E   +  +
Sbjct: 242 ----IIPHHLNLLNKIQNKVSEVVRILD--KVSFKQCLIF-----SNYQSRAESLCTQLK 290

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                   I G  S   +   ++  K   C++L++T +   GID  + ++II  +  + G
Sbjct: 291 QKGWETVCISGSQSQTSRLKTIECLKEFRCRILVSTDLTSRGIDAENVNLIINLDLPYDG 350

Query: 573 LAQLHQLRGRVGR 585
              +H++ GR GR
Sbjct: 351 STYMHRI-GRAGR 362


>gi|170749797|ref|YP_001756057.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656319|gb|ACB25374.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 583

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 130/326 (39%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQA-----------VIMAPIGILA-QQHYEFIKKY 344
           ++    GSGKT+   +AMA+ +   G+A           +++AP   LA Q   E    Y
Sbjct: 40  LVSAQTGSGKTVAYGLAMASMLI--GEADRLPPPAAPLALVIAPTRELALQVQRELSWLY 97

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------I 396
                 +   + G  P+   R     +A G  HI++GT    +D ++   L        +
Sbjct: 98  GPAGGRVAACVGGMDPRRESRM----LAEGT-HIVVGTPGRLRDHLERRNLDPTALRAVV 152

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTL-VLTSLGDIDISKITEKPA 453
           L   DE    G ++ ++    AT P     L +AT +P+ +  L      D  ++  K  
Sbjct: 153 LDEADEMLDLGFREDIEFILSATPPERATYLFSAT-LPKGIEALAERYQRDALRLAIKGE 211

Query: 454 GRK----PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            R       + V I     + V+  L +  ++ K A   C         N R+ V    +
Sbjct: 212 TRGHADIAYRAVRIMPRETEHVVLNL-LREADAKTAIVFC---------NTRNAVRHLQA 261

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                  S+  + G +   ++ + + + ++G  ++ +AT V   GID+   S++I  +  
Sbjct: 262 SLTERGFSVVALSGELGQGERNAALQALRDGRARVCVATDVAARGIDLPSLSLVIHADLP 321

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILL 595
           H      H+  GR GR     + +LL
Sbjct: 322 HDAEVMQHR-SGRTGRAGRKGTSVLL 346


>gi|116051990|ref|YP_789167.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587211|gb|ABJ13226.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 449

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 137/350 (39%), Gaps = 51/350 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT-------LVALIAMAAAVEAGG-Q 323
           +PT  Q  AI   L     K R L +     G+GKT       L  L      V A   +
Sbjct: 23  TPTPIQAQAIPPAL-----KGRDL-LAAAQTGTGKTAGFALPLLQRLTLEGPQVAANSVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHII 379
           A+++ P   LA+Q +  ++ Y Q+  +   +  G +   PQ  + RK ++        I+
Sbjct: 77  ALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVD--------IL 128

Query: 380 IGTHALF-----QDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAPHVLLMTATPI 431
           + T         Q+++++ +L  +++DE  R    G  + L            L  A P 
Sbjct: 129 VATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDE----------LFAALPR 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  +   +   R P+   + P N   + + +  V + + +KA   C  
Sbjct: 179 KRQTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHL 238

Query: 492 IEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++  +       +  R  VE    L +    +   IHG      +   +  FK G   LL
Sbjct: 239 LQANRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +AT V   G+D+ +  +++  +        +H++ GR GR       + L
Sbjct: 299 VATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRI-GRTGRAGASGQAVSL 347


>gi|326524209|dbj|BAJ97115.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 764

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 129/315 (40%), Gaps = 53/315 (16%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   ++ M   +        E G   VI AP   LA Q Y   KK+ +   + V 
Sbjct: 260 TGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLQVA 319

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G + +  + K L+        I++ T     D     +++ ++   +++DE  R   
Sbjct: 320 AVYGGVSKFEQFKELK----SGCEIVVATPGRLIDLLKMKALRMFRATYLVLDEADRMFD 375

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKT 460
             F  Q R  + Q       LL +AT +P     L    L D              PI+ 
Sbjct: 376 LGFEPQIRSIVGQIRPDRQTLLFSAT-MPYKVERLAREILTD--------------PIRV 420

Query: 461 VIIPINRIDEVIERLKVVL-SEGKKAYWICPQ----IEEKKESNFRS----VVERFNSLH 511
            +  +   +E I+++  VL S+ +K  W+  +    I++     F +    V E  N L+
Sbjct: 421 TVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKMPGMIDDGDVLVFATKKARVDEVENQLN 480

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +H    +A +HG      +   +  FK+G   +L+AT V   G+D+   SI  + N +  
Sbjct: 481 QH-GFKVAALHGDKDQASRMETLQKFKSGIYHVLVATDVAARGLDI--KSIKTVVNFDIA 537

Query: 572 GLAQLHQLR-GRVGR 585
               +H  R GR GR
Sbjct: 538 KEMDMHIHRIGRTGR 552


>gi|326493772|dbj|BAJ85348.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 126/314 (40%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 82  IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 141

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 142 ACVGGTSV----REDQRILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMF--VLDEADEM 195

Query: 404 HRFGVQQRL-KLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++  + Q       V + +AT  P  L +T        K   KP        V
Sbjct: 196 LSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITR-------KFMNKP--------V 240

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 241 RILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKM 300

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 301 RGRDHTVSATHGDMDQNTRDIIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 360

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 361 PENYLHRI-GRSGR 373


>gi|319408783|emb|CBI82440.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1]
          Length = 454

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 147/341 (43%), Gaps = 59/341 (17%)

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QAVIMAPIGILAQQHYE 339
           M +K  +L I Q   GSGKTL   + + + + A G        +A+I+ P   LA Q  E
Sbjct: 40  MLKKRDILGIAQ--TGSGKTLAFGLPVLSQILALGDKRYPKTARALILVPTRELAVQIEE 97

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYK 394
            I+   + + +   +I G +    R   ++R+  G   ++I T     D      I   +
Sbjct: 98  SIRMVAKGSHLSTCLILGGV---SRFAQIKRMKTG-VDVLIATPGRLMDLVSEKCIDLSQ 153

Query: 395 LILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              +++DE  R         VQ+  KL  +       L +AT +PR +V  +   ++   
Sbjct: 154 SRFLVLDEADRMLDMGFIRDVQRIAKLLHEKR--QTALFSAT-MPREIVTLAKNLLN--- 207

Query: 448 ITEKPAGRKPIKTVIIPINRI-DEVIERLKVVLSEGKKA----YWICPQIEEKKESNFRS 502
                   +P+K  I+P   +  ++ ++L  V +  KK+    +   P +       F  
Sbjct: 208 --------EPVKIEIVPQGTVATKITQKLYCVPTSEKKSVLNKFLTDPALAS--VIIFTR 257

Query: 503 VVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                +++    T    S+A IHG  S   ++  + +F+ G+  +L+AT +   GIDV  
Sbjct: 258 TKHGADAVARSLTKAGYSVAAIHGNKSHAARQRALKAFREGSVGILVATDIAARGIDVPG 317

Query: 560 ASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            S +I     + AE++    +H++ GR GR +   + I L+
Sbjct: 318 VSHVINYDLPDEAENY----VHRI-GRTGRNDTSGNAITLF 353


>gi|270293274|ref|ZP_06199485.1| primosomal protein N' [Streptococcus sp. M143]
 gi|270279253|gb|EFA25099.1| primosomal protein N' [Streptococcus sp. M143]
          Length = 797

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++ +     V I+
Sbjct: 284 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGEK----VAIL 339

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              +    +     ++  G A ++IG  +     ++   L ++I+DE+H    +Q
Sbjct: 340 HSGLSSGEKYDEWRKVERGDAQVVIGARSAIFAPLK--SLGVIIIDEEHEASYKQ 392


>gi|262166687|ref|ZP_06034424.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio mimicus VM223]
 gi|262026403|gb|EEY45071.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio mimicus VM223]
          Length = 734

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    S +     +L+G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 199 PKLNQEQAIA-IAAVNSHQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 258 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 312 FAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 372 KYHHLQLTQRAGNALPTRN 390


>gi|116873155|ref|YP_849936.1| helicase domain-containing protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742033|emb|CAK21157.1| helicase domain protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 442

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 130/313 (41%), Gaps = 32/313 (10%)

Query: 302 VGSGKTLVALIAMAAAVEA--GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            G+GKT+   +     +EA    Q +++AP   L  Q  E I+ +  +  + V  + G  
Sbjct: 45  TGTGKTVAYALPTLEKIEAIPKTQWLVLAPSHELVMQITEVIRSWLPSDDLTVISLIGG- 103

Query: 360 PQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
             A+ ++ +E++   +  II+ +       + Q  I+ +++ ++ +DE  +   Q+  K 
Sbjct: 104 --ANVKRQIEKLKK-KPQIIVASPGRALELIKQKKIKMHEIKMITLDECDQLLRQENFKS 160

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
           T       + ++ +    R L L S   ++  +   K   + P+   +I        +E 
Sbjct: 161 T-------LEIVESAVRDRQLTLVSATKLENPETFFKQTEKTPVTLEVIAKPEELTNVEH 213

Query: 475 LKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHE--HFTS-SIAIIHGRMSDID 529
           L + +    KA  +     I++ +   F     R   L E  H+     A IHG +    
Sbjct: 214 LYMDVESRDKATLLRRISHIKDMRGLVFVKDKPRMEILLEKLHYDKVKAAGIHGEIRKEK 273

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA----QLHQLRGRVGR 585
           ++  +D FK GT   LI T V   G+D+ D   +I     H+ LA    +     GR GR
Sbjct: 274 RKKYLDDFKKGTLTYLIVTDVAARGLDIEDLPYVI-----HYDLAASEKEYTHRSGRTGR 328

Query: 586 GEEISSCILLYHP 598
             +  + I   +P
Sbjct: 329 MGKSGTVITFANP 341


>gi|19113945|ref|NP_593033.1| ATP-dependent RNA helicase Rok1 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|1175447|sp|Q09775|ROK1_SCHPO RecName: Full=ATP-dependent RNA helicase rok1
 gi|1008436|emb|CAA91073.1| ATP-dependent RNA helicase Rok1 (predicted) [Schizosaccharomyces
           pombe]
          Length = 481

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 130/319 (40%), Gaps = 42/319 (13%)

Query: 302 VGSGKTLVALIAMAAA----VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIIT 356
            GSGKT+  L  +       V  G +A+I+AP   L +Q Y   +K +  T + I+E+  
Sbjct: 92  TGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSK 151

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ----YYKLILVIVDEQHRFG----V 408
            N     +   L      +  + IGT      +IQ    + K+   ++DE  R      +
Sbjct: 152 SNEKIQEKAPKLRE----KYDMCIGTPMRLVQAIQTGLSFEKVEFFVMDEADRLFEPGFI 207

Query: 409 QQRLKLTQKATAPHVL--LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI-IPI 465
           +Q   +    T+ ++   L +AT   R   L  +  +D            PI+ ++ +  
Sbjct: 208 EQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVD------------PIRIIVGLKD 255

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTSS--- 517
              D + +RL  V S+  K   I  Q+    E   R V+     ER  +L+         
Sbjct: 256 AATDSIDQRLLFVGSDTSKIV-ILRQMISNGELKPRVVIFVQDIERAKALYTELLFDEIH 314

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + +IHG +    +E  +  F+ G   +LIAT ++  GID     ++I  +      + +H
Sbjct: 315 VGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIH 374

Query: 578 QLRGRVGRGEEISSCILLY 596
           ++ GR GR       +  +
Sbjct: 375 RI-GRTGRAGNTGQAVTFF 392


>gi|330966041|gb|EGH66301.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 642

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 104/258 (40%), Gaps = 42/258 (16%)

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI---PRTLVLTSLGDIDISKITEKPA 453
           L + D Q  F + Q L LT  AT P V++         P  ++ T     ++    E  +
Sbjct: 151 LKLPDYQREFNIPQALLLTATAT-PQVIIDMQDKFAIAPEDVITTGFYRANLHLWVEPVS 209

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GR   + ++  +N        + V L   K A +I   +E+             N L   
Sbjct: 210 GRDKRRRLVEWLNERQGQPTIVYVTLQ--KTAEYIAAHLEQ-------------NGL--- 251

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +  H  + +  +ES+   F  G+   ++AT    +GID  D     I N  HF L
Sbjct: 252 ---PASAYHAGLPNDQRESIQKRFMGGSLNCIVATIAFGMGIDKSD-----IRNVVHFDL 303

Query: 574 AQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            +      Q  GR GR    S C++L     +++S   L+VL+N   G     E + +  
Sbjct: 304 PKSIENYSQEIGRAGRDGAASDCLVL----ANRDS---LNVLENFVYGDTPEREGIARVL 356

Query: 630 EGEILGIKQSGMPKFLIA 647
           E ++LG +  G  +FL+ 
Sbjct: 357 E-DLLGARNDGQWEFLLG 373


>gi|330445855|ref|ZP_08309507.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490046|dbj|GAA04004.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 455

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 154/362 (42%), Gaps = 44/362 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
           SPT  QE AI   L   + KN M        G+GKT   ++ +   ++ G        +A
Sbjct: 23  SPTPIQEKAIPVAL---TGKNLMA---AAQTGTGKTASFVLPILQMLDDGIKVRPKRVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP-QAHRRKALERIAHGQAHIIIGTH 383
           +I+AP   LA Q  + IK+Y+++  +    + G +  +  +R+ +E +      I++ T 
Sbjct: 77  LILAPTRELAVQVEDNIKQYSKHLNLKSMAMYGGVDYEPQKRRLIEGV-----DILVATP 131

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     +I +  + ++++DE  R      ++   K       ++   P+ R  +L 
Sbjct: 132 GRLLDMYTQRAIHFDAIEILVLDEADRMLDMGFIEDINK-------IVERLPVDRQNMLF 184

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +   K A R PI+  +      D  I++  V + +  K+  +   I+E++  
Sbjct: 185 SATLSDQVRFLAKTAVRNPIEISVAKNASADPKIDQWLVTVDKDMKSSLLSHLIQEQQWE 244

Query: 499 NFRSVVER-------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                +E           L +    + +   GR   + +  +++ FKNG  + LIAT V 
Sbjct: 245 QALIFIETKHGAAKLVTQLEKRGIKAESFHSGRSQGV-RSQLLEDFKNGKLQYLIATGVA 303

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+   + ++  +        +H++ GR GR       I      +SK+++  L ++
Sbjct: 304 SRGIDIEQLTRVVNYDLPFPPEEYVHRI-GRTGRAGASGEAISF----VSKDNFKNLCMI 358

Query: 612 KN 613
           ++
Sbjct: 359 ES 360


>gi|322705100|gb|EFY96688.1| ATP-dependent RNA helicase dbp3 [Metarhizium anisopliae ARSEF 23]
          Length = 596

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 122/291 (41%), Gaps = 31/291 (10%)

Query: 300 GDVGSGKTLVALIAMAAAVEA----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            + GSGKT+   +    +V A    G +AVI++P   LA Q +  +       ++    +
Sbjct: 220 AETGSGKTMAFALPCVESVSAIGKKGTKAVIVSPTRELAMQTHTQLASLAALAKLKCVCL 279

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---G 407
            G   +  +R  + R     A II+ T    +D     ++        ++DE  R    G
Sbjct: 280 FGGSSKDEQRAMVNR----GADIIVATPGRLKDFMSDGTVDLSGCQFAVLDEADRMLDKG 335

Query: 408 VQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            +  +K    A         L+ TAT       L S   +D  KIT    G K  +   +
Sbjct: 336 FEDDIKQILGACLARERRQTLMFTATWPQSVQALASTFMVDPVKITIGSGG-KETENGSV 394

Query: 464 PINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVV----ERFNSLHEHFTSS 517
            +     + ++++VV  + K  +   I  Q ++ K+ N R +V    ++  +  E+F S 
Sbjct: 395 ELQANTRISQKVEVVDPKDKEFRLLQILKQHQQGKQKNDRILVFCLYKKEATRVENFLSR 454

Query: 518 IAI----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             I    IHG +    +   +++FK G   +L+AT V   G+D+ +  ++I
Sbjct: 455 KGIRVGGIHGDLKQEQRTRSLEAFKTGQTPVLVATDVAARGLDIPEVKLVI 505


>gi|310829374|ref|YP_003961731.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612]
 gi|308741108|gb|ADO38768.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612]
          Length = 547

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 147/344 (42%), Gaps = 61/344 (17%)

Query: 280 AIKDI-LQDMS--QKNRMLRILQG-------DVGSGKTLVALIAMAAAVEA---GGQAVI 326
           AI D+   DM+  Q+  + R+++G         G+GKT+   I     ++      Q ++
Sbjct: 15  AIDDMGFVDMTEIQERAIPRLMEGGDLIGKSQTGTGKTMAFAIPAIEKIDPELRKPQVLV 74

Query: 327 MAPIGILA-QQHYEFIK--KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           + P   LA Q   EF K  KY+ + +++   + G     ++ + L+      A I++GT 
Sbjct: 75  LLPTRELALQVSEEFRKVLKYSHSIKVVA--VFGGASIENQIRDLK----SGAQIVVGTP 128

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHV--LLMTAT-PIP 432
               D     ++++  L + ++DE       G ++ ++L   A    V  +L +AT P P
Sbjct: 129 GRVMDHMRRKTLKFNALTMAVLDEADEMLNMGFREDIELILDAVDHDVQTVLFSATMPKP 188

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
                       I KI E    + P    I P   +   IE+    +S+  K   +   +
Sbjct: 189 ------------ILKIAE-TYQKNPTMIEISPKTMVAPSIEQKYFNISDQNKFEALTRLL 235

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +  K        N +  V+      +    S+  IHG M  + + +V+  F  G  K+L+
Sbjct: 236 DVYKPQRSLIFCNTKHYVDEITENLQELGYSVDKIHGDMRQVSRLNVLKRFSQGRLKILV 295

Query: 547 ATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRG 586
           AT V   GIDV D  I+    + +N E++    +H++ GR GR 
Sbjct: 296 ATDVAARGIDVDDVDIVFNYDVPDNEEYY----VHRI-GRTGRA 334


>gi|254293945|ref|YP_003059968.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
 gi|254042476|gb|ACT59271.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
          Length = 478

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 138/348 (39%), Gaps = 42/348 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI  I+Q       +  I Q   G+GKT   ++ M   +  G       + +I
Sbjct: 24  PTPIQAQAIPAIIQGRD----VTGIAQ--TGTGKTAAFVLPMIHKLGQGRAKARMPRTLI 77

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  +  +KY  N ++ + ++ G +  A + K L         ++I T    
Sbjct: 78  LEPTRELAAQVADNFEKYGVNHKLNMALLIGGVSFADQDKKLT----AGVDVLIATPGRL 133

Query: 387 QDSIQYYKLIL-----VIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D  +  +L++     +++DE  R    G    ++   K   P    LL +AT  P    
Sbjct: 134 MDHFERGRLLMTGVQMLVIDEADRMLDMGFIPDIEKICKLLPPRRQTLLFSATMPPEIAK 193

Query: 437 LTSLGDIDISKI-TEKPAGRKPIKT--VIIPINRIDEV---IERLKVVLSEGKKAYWICP 490
           LT     D  +I   +PA    + T  V    +  DE+   I R  +   E K     C 
Sbjct: 194 LTKQFQNDPKQIEVARPAQTAELITQHVTKSPSDKDEIKRGILRAIIASCEVKNGIVFC- 252

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
               K+E +  +      SL+ H   + A IHG +S   +   ++ FKNG   LL+A+ V
Sbjct: 253 --NRKREVDIVA-----KSLNAHGFDA-APIHGDLSQSYRMETLEKFKNGDLTLLVASDV 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+ D   +            +H++ GR GR         +  P
Sbjct: 305 AARGLDIPDVGHVFNYAPPPNSDDYVHRI-GRTGRAGRTGESYTIVSP 351


>gi|229192037|ref|ZP_04319007.1| Primosomal protein N' [Bacillus cereus ATCC 10876]
 gi|228591588|gb|EEK49437.1| Primosomal protein N' [Bacillus cereus ATCC 10876]
          Length = 767

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA ++ G +A+++ P
Sbjct: 228 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLKKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|191165035|ref|ZP_03026879.1| ATP-independent RNA helicase DbpA [Escherichia coli B7A]
 gi|309797091|ref|ZP_07691489.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|190904807|gb|EDV64512.1| ATP-independent RNA helicase DbpA [Escherichia coli B7A]
 gi|308119261|gb|EFO56523.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
          Length = 457

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|260903903|ref|ZP_05912225.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium
           linens BL2]
          Length = 606

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 132/320 (41%), Gaps = 40/320 (12%)

Query: 302 VGSGKTLV-ALIAMAAAVEAGGQ-----AVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
            G+GKT   AL A++   EAG       A+++ P   LA Q  E    Y  N     V  
Sbjct: 59  TGTGKTAAFALPALSDLAEAGRANDGPFALVLTPTRELAIQVAEAFTSYATNLDDFSVLP 118

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRF 406
           I G      +   L+R     A +++GT     D ++           LIL   DE  + 
Sbjct: 119 IYGGQAYGPQLSGLKR----GAQVVVGTPGRVIDHLKKGSLKLGSLRHLILDEADEMLKM 174

Query: 407 GVQQRLK--LTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKPI 458
           G  + ++   +Q   +  V L +AT +P ++       L +  ++ ++  ++  +  +  
Sbjct: 175 GFAEDIEEIFSQSGDSRQVALFSAT-MPTSIHRLTGKYLNNPKEVRVASKSQTGSNIRQR 233

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             ++   +++D +   L+V   EG   +    Q  E+     R+           F +S 
Sbjct: 234 YHMVQHSHKLDALTRILEVEEYEGIIMFVRTKQATEELAEKLRA---------RGFKASA 284

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I+G +    +E  +D  +NG   +L+AT V   G+DV   ++++  +  H   + +H+
Sbjct: 285 --INGDIPQQARERTIDMLRNGKVDILVATDVAARGLDVERITLVVNFDIPHDTESYVHR 342

Query: 579 LRGRVGRGEEISSCILLYHP 598
           + GR GR       IL   P
Sbjct: 343 I-GRTGRAGRSGEAILFVTP 361


>gi|315128153|ref|YP_004070156.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315016666|gb|ADT70004.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 432

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 154/358 (43%), Gaps = 50/358 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT-------LVALIAMAAA 317
           L ++ +S PT  Q  AI  IL           I   + GSGKT       L  L     A
Sbjct: 23  LSDLEYSQPTPIQAKAIPSILAGSD------LIAGANTGSGKTATFALPMLQTLFLAQGA 76

Query: 318 VEAGGQA-----VIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALER 370
            +A  +      +I+ P   LA Q  + +K Y+ N    ++ +   G +    + +AL  
Sbjct: 77  KKAASKGNFVTGLILVPTRELAVQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQAL-- 134

Query: 371 IAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
              G A II+ T     D     +I+  K+  +++DE  R      L  T++  A  + L
Sbjct: 135 --RGGADIIVATPGRLLDLISSNAIKLDKVSTLVLDEADRM---LSLGFTEE-LAELLAL 188

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGK 483
           M A    +T++ ++     ++++T+K     P++   I +   DE  +++R+  V ++G+
Sbjct: 189 MPAKK--QTMLFSATFPEQVTQLTQKLL-TNPVE---IQVQSKDESTLVQRVFTV-NKGE 241

Query: 484 KAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           K   +   I++ K        N +   E   S  E    +  + HG     ++  V++ F
Sbjct: 242 KTTVLAHLIKQHKWRQALIFVNAKKDCEHLASKLEKRGVNAQVFHGDKGQSERTRVIEKF 301

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           K G  ++LIAT +   G+D+    ++I  N        +H++ GR GR  E+   + L
Sbjct: 302 KAGEIEVLIATDIAARGLDIEKLPVVINFNLPRSPADYMHRI-GRSGRAGEVGLALSL 358


>gi|309798769|ref|ZP_07693033.1| primosomal protein N' [Streptococcus infantis SK1302]
 gi|308117586|gb|EFO54998.1| primosomal protein N' [Streptococcus infantis SK1302]
          Length = 688

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDMGKTAIVLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              +    +     ++  G+A +++G  +     ++   L ++I+DE+H    +Q
Sbjct: 341 HSGLSNGEKYDEWRKVERGEAQVVVGARSAVFAPLK--NLGVIIIDEEHEASYKQ 393


>gi|302765623|ref|XP_002966232.1| hypothetical protein SELMODRAFT_143895 [Selaginella moellendorffii]
 gi|300165652|gb|EFJ32259.1| hypothetical protein SELMODRAFT_143895 [Selaginella moellendorffii]
          Length = 412

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 122/312 (39%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++      Q  V 
Sbjct: 80  IQQAQSGTGKTATFCSGILQQLDGHLNECQALVLAPTRELAQQIEKVMRALGDYLQTKVH 139

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++   L        +L   DE   
Sbjct: 140 ACVGGTDV----RQDQRICQAGVHVVVGTPGRVYDMLRRRALRSEHIRMFVLDEADEMLS 195

Query: 406 FGVQQRL-KLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + Q   A   V L +AT  P  L +T        K    P        V I
Sbjct: 196 RGFKDQIYDIFQLLPAKVQVGLFSATMPPEALEITR-------KFMSNP--------VRI 240

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K      ++  W    + +  E+          N R  V+        
Sbjct: 241 LVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFCNTRRKVDWLTDKLRS 300

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 301 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPE 360

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 361 NYLHRI-GRSGR 371


>gi|290991785|ref|XP_002678515.1| DEAD/DEAH box helicase family protein [Naegleria gruberi]
 gi|284092128|gb|EFC45771.1| DEAD/DEAH box helicase family protein [Naegleria gruberi]
          Length = 478

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 130/346 (37%), Gaps = 61/346 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV-------EAGGQAVIMAPIGILAQQHYEFIKK-YTQNT 348
           + Q   GSGKTL  L+     +         G   +I++P   LA Q Y   K   T   
Sbjct: 19  LAQAKTGSGKTLAFLLPCLELLYRAEFKPRNGTGVIILSPTRELAIQTYAVCKSLMTFMK 78

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT------HALFQDSIQYYKLILVIVDE 402
           Q    +I G      + +  E++  G  +I+I T      H L      Y  LI +++DE
Sbjct: 79  QTHCLLIGGQ----SKHQEGEKLVKG-CNIVIATPGRLLDHLLHTKGFVYSNLISLVLDE 133

Query: 403 QHRF---GVQQRLKLTQK---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
             R    G ++ LK   K         LL +AT   +          DI++++ K   R 
Sbjct: 134 ADRMLDDGFEEELKAIVKLLPTKGRQTLLFSATQTTKV--------ADIARVSIK---RD 182

Query: 457 PIKTVIIPINRIDEV---------------------IERLKVVLSEGKKAYWICPQIEEK 495
           P+   I  +N+I +                       E+  ++ S  KK     P  + K
Sbjct: 183 PVFVGIEDLNKITKTEETEEYSTATNLEQGYVVVPASEKFVLLYSFLKKTMATTPGKKGK 242

Query: 496 KESNFRS---VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           K   F S    V+ ++ L  +   S+  +HG+M    +     +F      +L++T V  
Sbjct: 243 KIIVFFSSCAAVKYYSELLNYINVSVTPLHGKMKQNKRTQAFMNFCGAESGVLLSTDVAA 302

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G+D+     I+  +        +H++ GR  R   +   +L   P
Sbjct: 303 RGLDIPKVDWIVQYDPPEAPKEYIHRV-GRTARAGNVGRALLFLLP 347


>gi|227513927|ref|ZP_03943976.1| ATP-dependent RNA helicase [Lactobacillus fermentum ATCC 14931]
 gi|227087734|gb|EEI23046.1| ATP-dependent RNA helicase [Lactobacillus fermentum ATCC 14931]
          Length = 440

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 128/313 (40%), Gaps = 50/313 (15%)

Query: 302 VGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            GSGKTL     +   V    G Q +++ P   LA Q    ++++     + V   TG  
Sbjct: 43  TGSGKTLAFTWPLLPKVMKGQGTQILVLEPSQELALQTTRVMREWAALLGLKVHSATGG- 101

Query: 360 PQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQR 411
             A+ R+  ER+   +  +++GT     H L    ++   L  +++DE     R   Q  
Sbjct: 102 --ANLRRQTERLKKERPEVVVGTPGRILHLLDTRDLKLNNLATLVIDEADDLLRDDTQAV 159

Query: 412 LKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISKITEKPA--GRKPIKTVIIPINR 467
           ++  ++AT     +   +AT       L  L   D+ KI  +     R P+K  ++    
Sbjct: 160 VEDIERATPLDTQLAFFSATQSTTLEQLDVLFGRDLVKIDVRAQDHSRGPVKHGLVVART 219

Query: 468 IDE---VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE-HFTSS------ 517
           + +   ++ERL                    +  NFR++V  F S+   H+T+S      
Sbjct: 220 MSDKAVMLERLS-------------------QTKNFRALV-FFTSIKTLHYTASRLRHDG 259

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
              A + GR    ++E+VM  F+    KLL+ T V   G+D+     ++     +     
Sbjct: 260 ISSATLGGRQRQTERETVMRQFRKHQVKLLLTTDVAARGLDIPKLPAVVNFELPNTADGY 319

Query: 576 LHQLRGRVGRGEE 588
           +H+  GR GR  E
Sbjct: 320 VHRT-GRTGRQGE 331


>gi|254519619|ref|ZP_05131675.1| DEAD/DEAH box helicase domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226913368|gb|EEH98569.1| DEAD/DEAH box helicase domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 370

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 161/380 (42%), Gaps = 50/380 (13%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + +  K+  ++ +N   +PTK Q + I +I+      N+   I +   GSGKTL  L+ +
Sbjct: 6   LKINTKLVDELKKNGITTPTKVQVNVIPEII------NKNDVIGKSKTGSGKTLAFLLPI 59

Query: 315 AAAVEAGGQA---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
              +++  ++   +I++P   LA Q  E   K+  N   I+    G    +  +K  + I
Sbjct: 60  LQIIDSNSKSTEVLILSPTRELAIQITEEANKFNINDIGILAAYGGKDVGSQLKKLNKGI 119

Query: 372 AHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHV 423
                ++II T     D     SI   KL  V++DE  +    G +  ++    + AP  
Sbjct: 120 -----NLIIATPGRLLDHLERKSINLSKLNTVVIDEADQMLLMGFRNEIEKIM-SYAPKK 173

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV-IERLKVVLSEG 482
           L        +TL  ++  D  + K+    A R      II I   +E  I  +K  + + 
Sbjct: 174 L--------QTLCFSATIDSKVKKL----AYRYMNNPTIIDITENEESEIPNIKQEVVKT 221

Query: 483 KKAYWICPQIEEKKESN-FRSVV-----ERFNSLHEHFTSS---IAIIHGRMSDIDKESV 533
              + +   ++  +E N F S++      R + L     +     A IH  +    +E +
Sbjct: 222 TDRWKVDALVKILEEDNPFMSIIFCRTKRRADELEVKLAAKGIKAAKIHSDVPQNKREKI 281

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M SF++   + LIAT V   GIDV   + I   +A     + +H++ GR  R  +     
Sbjct: 282 MKSFRDCEIQFLIATDVASRGIDVTGVTHIYNYDAPESVESYIHRI-GRTARAGDSGYTC 340

Query: 594 LLYHPPLSKNSYTRLSVLKN 613
           L+  P     +YT L  ++N
Sbjct: 341 LITDP----KNYTILEEIEN 356


>gi|217964610|ref|YP_002350288.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HCC23]
 gi|217333880|gb|ACK39674.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HCC23]
 gi|307570824|emb|CAR84003.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
          Length = 470

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 123/310 (39%), Gaps = 31/310 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKT    I +A  VE      QA+I+ P   LA Q         +  ++   
Sbjct: 40  VAKSQTGSGKTAAFAIPIAEQVEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAA 99

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
            I G  P A ++  L +    + HI++GT     D I+           L+L  VDE   
Sbjct: 100 AIYGQSPFAKQKLELSQ----KNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLS 155

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G   +++  L++       L  +AT       L      D   I        PI  V +
Sbjct: 156 MGFIDQVEDILSRLPKQRQNLFFSATMPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEM 215

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             +  ++ ++   V+++E   +  I           F +   + + L +      + IHG
Sbjct: 216 QTDNKEKTLK--DVLITENPDSAII-----------FCNTKNQVDELTDLLDVKASKIHG 262

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +   D+   MD FK+G  + LIAT V   GIDV + S++I  +        +H++ GR 
Sbjct: 263 GLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRI-GRT 321

Query: 584 GRGEEISSCI 593
           GR  +    I
Sbjct: 322 GRAGKSGKAI 331


>gi|165869135|ref|ZP_02213795.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167641387|ref|ZP_02399638.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170704569|ref|ZP_02895035.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177649201|ref|ZP_02932203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190565289|ref|ZP_03018209.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|229603661|ref|YP_002866798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254685050|ref|ZP_05148910.1| ATP-dependent RNA helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254722456|ref|ZP_05184244.1| ATP-dependent RNA helicase [Bacillus anthracis str. A1055]
 gi|254737496|ref|ZP_05195199.1| ATP-dependent RNA helicase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743317|ref|ZP_05201002.1| ATP-dependent RNA helicase [Bacillus anthracis str. Kruger B]
 gi|254751811|ref|ZP_05203848.1| ATP-dependent RNA helicase [Bacillus anthracis str. Vollum]
 gi|254760330|ref|ZP_05212354.1| ATP-dependent RNA helicase [Bacillus anthracis str. Australia 94]
 gi|164715861|gb|EDR21378.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167510664|gb|EDR86059.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170130370|gb|EDS99231.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|172084275|gb|EDT69333.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190563316|gb|EDV17281.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|229268069|gb|ACQ49706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
          Length = 447

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 136/315 (43%), Gaps = 49/315 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 43  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 102

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 103 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 158

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT IP+          DI K+ ++      +  V 
Sbjct: 159 YFGFLYDIEDILDETPGSKQTMLFSAT-IPK----------DIKKLAKRYMDEPQMIQVQ 207

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 208 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 264

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 265 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVES 324

Query: 571 FGLAQLHQLRGRVGR 585
           +    +H++ GR GR
Sbjct: 325 Y----IHRI-GRTGR 334


>gi|328471261|gb|EGF42162.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus MTCC 5462]
          Length = 175

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 18/158 (11%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M  QFK+    P  + G  A  I +     PT  Q+  I  +L+  +       + Q   
Sbjct: 1   MDNQFKQYQLKPFVIAGLDAMGITQ-----PTPIQKKVIPALLRGEN------LVGQSQT 49

Query: 303 GSGKT---LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-VEIITGN 358
           GSGKT   LV L+++    E   Q VI AP   LA Q Y   ++ TQ    I +  + G 
Sbjct: 50  GSGKTHAFLVPLLSLVDPNEDATQVVITAPSRELANQIYAVAQQLTQTEPAIRISRLVGG 109

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           M    ++K ++++   Q H+ IGT     D I+ Y L+
Sbjct: 110 M---DKQKQIDKLQAHQPHVAIGTPGRILDMIKRYDLV 144


>gi|326405112|ref|YP_004285194.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301]
 gi|325051974|dbj|BAJ82312.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301]
          Length = 470

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 7/139 (5%)

Query: 464 PINRIDEVIERLKVVLSEGK-KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IA 519
           P++RID+ +  L +   E K K  W+   +  ++   F       + +  H   +    A
Sbjct: 216 PVDRIDQQV--LLLAPEEKKDKLAWLLADVAVERAIVFTRTKHGADKVTRHLEDAGIGAA 273

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG  S   +E  +D F++G  ++L+AT +   GIDV + S ++     +   + +H++
Sbjct: 274 AIHGNKSQGQRERALDQFRSGRIRVLVATDIAARGIDVDNVSHVVNFELPNVPESYVHRI 333

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR  R       I L  P
Sbjct: 334 -GRTARAGAEGVAISLVEP 351


>gi|294852830|ref|ZP_06793503.1| excinuclease ABC subunit B [Brucella sp. NVSL 07-0026]
 gi|294821419|gb|EFG38418.1| excinuclease ABC subunit B [Brucella sp. NVSL 07-0026]
          Length = 940

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 146 KSEGGIPIRME----------TSFEPSGDQPTAIRDLMEGLENQDRT-QVLLGVTGSGKT 194

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                 MA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 195 FT----MAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 234


>gi|228954145|ref|ZP_04116173.1| Primosomal protein N' [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229071366|ref|ZP_04204589.1| Primosomal protein N' [Bacillus cereus F65185]
 gi|229081123|ref|ZP_04213633.1| Primosomal protein N' [Bacillus cereus Rock4-2]
 gi|229180144|ref|ZP_04307488.1| Primosomal protein N' [Bacillus cereus 172560W]
 gi|228603353|gb|EEK60830.1| Primosomal protein N' [Bacillus cereus 172560W]
 gi|228702167|gb|EEL54643.1| Primosomal protein N' [Bacillus cereus Rock4-2]
 gi|228711820|gb|EEL63772.1| Primosomal protein N' [Bacillus cereus F65185]
 gi|228805465|gb|EEM52056.1| Primosomal protein N' [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 767

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA ++ G +A+++ P
Sbjct: 228 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLKKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|117621384|ref|YP_857155.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562791|gb|ABK39739.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 642

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 129/320 (40%), Gaps = 37/320 (11%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + + + +EAG    Q +++AP   LA Q  E  ++Y  +     V  
Sbjct: 62  QAQTGTGKTAAFALPLLSRLEAGNRNTQILVLAPTRELALQVAEACQRYAHHMPDFHVLP 121

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRF 406
           I G      + +AL R     A +++GT     D I+   L        +L   DE  R 
Sbjct: 122 IYGGASYETQTRALRR----GAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRM 177

Query: 407 GVQQRLK--LTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKT- 460
           G    +   + Q      V L +AT +P   R +    L      KI  K A    I+  
Sbjct: 178 GFIDDVDWIMEQCPAGRQVALFSAT-MPEQIRRVAQKHLKQPKEIKIASKTATATTIRQR 236

Query: 461 --VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
              +  ++++D +   L+V   E  +A  +  + +   E     +  R ++         
Sbjct: 237 YWQVTGLHKLDAMTRLLEV---EPYEALLVFVRTKNAAEELAGKLAARGHACE------- 286

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG +    +E  +D  + G   +LIAT V+  G+DV   + ++  +  +   + +H+
Sbjct: 287 -ALHGDIPQKLRERTVDKLRQGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHR 345

Query: 579 LRGRVGRGEEISSCILLYHP 598
           + GR GR       IL   P
Sbjct: 346 I-GRTGRAGRKGEAILFVAP 364


>gi|84385216|ref|ZP_00988248.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
 gi|84379813|gb|EAP96664.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
          Length = 673

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 117/295 (39%), Gaps = 44/295 (14%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+IMAP   LA Q    IK   ++   + V  I G      + +AL R     AHI++G
Sbjct: 76  QAIIMAPTRELAIQVAAEIKNLGRDINGLKVLEIYGGASIVDQMRALSR----GAHIVVG 131

Query: 382 THALFQDSIQYYKLILVIVDEQHRF---GVQQRLK----------LTQKATAPHVLLMTA 428
           T    +D +   +L L   DE H F      + LK          L Q   +   +L +A
Sbjct: 132 TPGRVKDLLTRDRLHL---DEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSA 188

Query: 429 T--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLS-EGKK 484
           T  P+ +T+V   L              R P +  +   N  +D+V +   VV   E  +
Sbjct: 189 TMPPMVKTIVDRYL--------------RNPARVDVAGTNHTVDKVAQNYWVVKGVEKDE 234

Query: 485 AYWICPQIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           A     + EE   S      R   ER            A +HG +    +E  +D  K G
Sbjct: 235 AMSRLLETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQG 294

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
              +L+AT V+  G+DV   + +   +      + +H++ GR GR       ILL
Sbjct: 295 VIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILL 348


>gi|330874369|gb|EGH08518.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 642

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 104/258 (40%), Gaps = 42/258 (16%)

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI---PRTLVLTSLGDIDISKITEKPA 453
           L + D Q  F + Q L LT  AT P V++         P  ++ T     ++    E  +
Sbjct: 151 LKLPDYQREFNIPQALLLTATAT-PQVIIDMQDKFAIAPEDVITTGFYRANLHLWVEPVS 209

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GR   + ++  +N        + V L   K A +I   +E+             N L   
Sbjct: 210 GRDKRRRLVEWLNERQGQPTIVYVTLQ--KTAEYIAAHLEQ-------------NGL--- 251

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +  H  + +  +ES+   F  G+   ++AT    +GID  D     I N  HF L
Sbjct: 252 ---PASAYHAGLPNDQRESIQKRFMGGSLNCIVATIAFGMGIDKSD-----IRNVVHFDL 303

Query: 574 AQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            +      Q  GR GR    S C++L     +++S   L+VL+N   G     E + +  
Sbjct: 304 PKSIENYSQEIGRAGRDGAASDCLVL----ANRDS---LNVLENFVYGDTPEREGIARVL 356

Query: 630 EGEILGIKQSGMPKFLIA 647
           E ++LG +  G  +FL+ 
Sbjct: 357 E-DLLGARNDGQWEFLLG 373


>gi|325696579|gb|EGD38468.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK160]
 gi|327461372|gb|EGF07703.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1]
 gi|327474010|gb|EGF19423.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK408]
          Length = 363

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 141/339 (41%), Gaps = 51/339 (15%)

Query: 302 VGSGKTLVALIA--MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            G+GKTL  L    +    +   Q +I+AP   L+ Q +E  K + +   +  +++    
Sbjct: 46  TGTGKTLAYLFPSLLRLTPKKAQQLLILAPNTELSGQIFEVCKTWAEPLGLTAQLLLSGS 105

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKL 414
            Q   ++ +ER+  G   IIIGT     + I+  K+ +     +I+DE  +     +   
Sbjct: 106 SQ---KRQIERLKKG-PEIIIGTPGRIFELIKLKKIKMMNVETIILDEFDQLLSDSQYHF 161

Query: 415 TQKAT--AP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             K T  AP    ++ M+AT              D  KITE         T+ I I+  D
Sbjct: 162 VDKITHYAPRNHQLIYMSAT-----------AKFDHDKITEN--------TLEISID--D 200

Query: 470 EVIERLKVVLSEGKKAYWI-----CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
           +V++ ++    + +K   +        +E+ +   F + +    S  E      A     
Sbjct: 201 QVLDNIQHFYMQVEKRDKVDLLRKLSNVEDFRGLVFFNALSDLGSAEEKLQYREANAVSL 260

Query: 525 MSDID---KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            SD++   ++ ++D FK     LL+AT ++  GID +D+   ++       L       G
Sbjct: 261 ASDVNVKFRKVILDKFKEHQITLLLATDLVARGID-IDSLECVVNYELPRDLETYTHRSG 319

Query: 582 RVGR-GEEISSCILLYHP----PLSKNSYTRLSVLKNTE 615
           R GR G+E     L+ HP     L K +  R  +LKN E
Sbjct: 320 RTGRMGKEGYVITLISHPEELKTLKKYASVREILLKNQE 358


>gi|324994094|gb|EGC26008.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK678]
          Length = 447

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 150/358 (41%), Gaps = 44/358 (12%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           Q+ LR++ F   T  QE  I  +L       R L + +   GSGKT   L+ +   ++  
Sbjct: 13  QEALRDLNFVEATPVQEKLIPVVLS-----GRDL-VGESKTGSGKTHTFLLPIFQILDEE 66

Query: 322 G---QAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               QAVI AP   LA Q Y+  ++       +I V    G   +A +   LE     Q 
Sbjct: 67  ADSVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGKLE---SSQP 123

Query: 377 HIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           HI+IGT     D ++   L +      +VDE         L +   AT   +    A  +
Sbjct: 124 HIVIGTPGRIYDLVESGDLAIHKAKTFVVDE-----ADMTLDMGFLATVDKI----AGRL 174

Query: 432 PRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGK---- 483
           P+ L           K+  +P  +K    P+   I     I + IE   ++ ++G+    
Sbjct: 175 PKDLQFLVFSATIPQKL--QPFLKKYLSNPVIEQIKTKTVIADTIENW-LLSTKGRDKNA 231

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           + Y I   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN 
Sbjct: 232 QIYQISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|325968256|ref|YP_004244448.1| helicase [Vulcanisaeta moutnovskia 768-28]
 gi|323707459|gb|ADY00946.1| helicase domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 1037

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 6/85 (7%)

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           R   E +  L E     I +I  + SD  ++S+  +F  G  K+++ATTV++ GIDV DA
Sbjct: 891 RQAEELYKVLKEELGPIITLITSKTSD--RDSIFKAFARGAYKVIVATTVLDEGIDVPDA 948

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGR 585
            + II +    G     Q+  R+GR
Sbjct: 949 DVAIILS----GTGSRRQMIQRIGR 969


>gi|312212571|emb|CBX92654.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1194

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 132/333 (39%), Gaps = 52/333 (15%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL   I M   +          G   +I+AP   L+ Q    +K +   + I ++
Sbjct: 585 TGSGKTLAFGIPMIRHILDQRPLKGSDGPIGLILAPTRELSLQIVSELKPFLSASNITIK 644

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
              G  P + +   +  I  G  HI+  T     D +Q        + ++  V++DE  R
Sbjct: 645 CAYGGQPISDQ---IAMIKRGGIHILCATAGRLIDLLQSNSGRVLNFKRITYVVLDEADR 701

Query: 406 F---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPA-----GR 455
               G + ++        P    +L +AT  P+++   SL      K   KPA     GR
Sbjct: 702 MFDMGFEPQVMKILATIRPDRQTILFSAT-FPKSMA--SLA----RKALNKPAEVIIGGR 754

Query: 456 KPIKTVIIPI---------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
             +   I  I          +I +++  L  V SE + +  +     E++E+      + 
Sbjct: 755 SKVAPEITQIIEFVPPSYEKKIAKLLLHLGQVFSENENSQVLI--FTERQET----AEDL 808

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            + L +    S+  IHG     D+   ++ FK G   +LIAT+V   G+DV   +++   
Sbjct: 809 LSKLFKVSYLSVNTIHGAKDQTDRNEALNDFKQGVLSILIATSVAARGLDVPGLALVFNF 868

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +        +H+  GR GR     + I L   P
Sbjct: 869 DCPTHLEDYVHRC-GRTGRAGNKGTAITLIEDP 900


>gi|289628314|ref|ZP_06461268.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
          Length = 413

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 143/337 (42%), Gaps = 47/337 (13%)

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAM------AAAVEAGGQAVIMAPIGILAQQHYEFI 341
           ++ + R LR+     GSGKT   ++ +       A V    +AVI+ P   LAQQ  + +
Sbjct: 1   LALQGRDLRV-TAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAVILLPTRELAQQTLKEV 59

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL---- 397
           ++++Q T +   +ITG      +   L ++      I+IGT     + +    L L    
Sbjct: 60  ERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD----ILIGTPGRLLEQLNAGNLDLKHVE 115

Query: 398 -VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTL------VLTSLGDIDI 445
            +++DE  R    G  + ++    + A     +L +AT     L      VL     + +
Sbjct: 116 VLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLREMIGKVLKDPQHLQV 175

Query: 446 SKITEKPAG-RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---SNFR 501
           + ++E  +G R  I T        D  + + +V+        W+      +K    +N +
Sbjct: 176 NSVSELASGTRHQIITA-------DHNVHKEQVL-------NWLLANETYQKAIIFTNTK 221

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           ++ +R             ++HG     D+++ +D  K G  K+++AT V   G+DV    
Sbjct: 222 AMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARGLDVEGLD 281

Query: 562 IIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
           ++I  +    G   +H++ GR GR G +  +  L+ H
Sbjct: 282 MVINFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICH 317


>gi|269138721|ref|YP_003295422.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|267984382|gb|ACY84211.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|304558724|gb|ADM41388.1| ATP-dependent RNA helicase DbpA [Edwardsiella tarda FL6-60]
          Length = 457

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 135/317 (42%), Gaps = 32/317 (10%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKK---YTQNTQIIV 352
           Q   GSGKT    + +   ++A     Q++++ P   LA Q    ++K   Y  N +++ 
Sbjct: 46  QAKTGSGKTAAFGLGLLQHIDANRFITQSLVLCPTRELADQVATALRKLARYMPNIKVLT 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRFG 407
             + G +P   +R +L    H   H+I+ T       L ++++    L  +I+DE  R  
Sbjct: 106 --LCGGVPFGAQRDSL---IHA-PHVIVATPGRLLDHLKKETVSLEALQTLILDEADRM- 158

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               L +   A A   ++  A    +TL+ ++    +I+ I+ +   R P+   I     
Sbjct: 159 ----LDMG-FADALDEVISWAPEKRQTLLFSATWPAEIAAISRR-IQRDPLTIEIDTHGE 212

Query: 468 IDEVIERLKVVLSEGKKAYW--ICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIH 522
           +  V +R   V   GK      +  Q +      F +  +   ++++    S   +  +H
Sbjct: 213 LPAVEQRFYEVSRGGKVGLLQTLLSQYQPASCVVFCNTKKDCQAVYDALEGSEQSVLALH 272

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-G 581
           G M   D++  +  F NG+ ++L+AT V   G+D+    ++I  N E     ++H  R G
Sbjct: 273 GDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKALEMVI--NYELSWDPEVHVHRIG 330

Query: 582 RVGRGEEISSCILLYHP 598
           R  R  E    I L  P
Sbjct: 331 RTARAGESGLAISLCAP 347


>gi|229129144|ref|ZP_04258117.1| Primosomal protein N' [Bacillus cereus BDRD-Cer4]
 gi|229146439|ref|ZP_04274810.1| Primosomal protein N' [Bacillus cereus BDRD-ST24]
 gi|228637072|gb|EEK93531.1| Primosomal protein N' [Bacillus cereus BDRD-ST24]
 gi|228654381|gb|EEL10246.1| Primosomal protein N' [Bacillus cereus BDRD-Cer4]
          Length = 765

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA ++ G +A+++ P
Sbjct: 226 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLKKGKEAIVLVP 285

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 286 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 341

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 342 P---FENLGIIIIDEEHESSYKQ 361


>gi|209918588|ref|YP_002292672.1| ATP-dependent RNA helicase DbpA [Escherichia coli SE11]
 gi|218553903|ref|YP_002386816.1| ATP-dependent RNA helicase DbpA [Escherichia coli IAI1]
 gi|293433706|ref|ZP_06662134.1| ATP-independent RNA helicase DbpA [Escherichia coli B088]
 gi|209911847|dbj|BAG76921.1| ATP-dependent RNA helicase [Escherichia coli SE11]
 gi|218360671|emb|CAQ98232.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           IAI1]
 gi|291324525|gb|EFE63947.1| ATP-independent RNA helicase DbpA [Escherichia coli B088]
 gi|320199384|gb|EFW73975.1| ATP-dependent RNA helicase DbpA [Escherichia coli EC4100B]
 gi|323947687|gb|EGB43690.1| DEAD/DEAH box helicase [Escherichia coli H120]
          Length = 457

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|196014693|ref|XP_002117205.1| DEAD box ATP-dependent RNA helicase [Trichoplax adhaerens]
 gi|190580170|gb|EDV20255.1| DEAD box ATP-dependent RNA helicase [Trichoplax adhaerens]
          Length = 401

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 152/349 (43%), Gaps = 75/349 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ +IK I++          I Q   G+GKT    I++  A++      QA+IM+P
Sbjct: 51  PSAIQQRSIKPIIEGRDV------IAQAQSGTGKTATFSISVLQAIDTQLRETQALIMSP 104

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I        +      G     +  + + ++ +GQ HI+ G+     D 
Sbjct: 105 TRELAVQIQKVILALGDYMNVQCHACIGG---TNVGEDIRKLDYGQ-HIVSGSPGRVFDM 160

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++    +   P   V+L++AT +P       
Sbjct: 161 IRRRNLRTRSIKMLVLDEADEMLNQGFKEQIYDVYRYLPPSTQVVLLSAT-LPH------ 213

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               DI ++T K    +P++ ++          +R ++ L EG K +++     E++E  
Sbjct: 214 ----DILEMTRKFMT-EPMRILV----------KRDELTL-EGIKQFFVAV---EREEWK 254

Query: 500 FRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMDS 536
           F ++ + +++L                         +FT  ++ +HG M   +++++M  
Sbjct: 255 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT--VSSMHGDMPQKERDAIMKE 312

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           F++G  ++LI T V   GIDV   S++I  +  +     +H++ GR GR
Sbjct: 313 FRSGASRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI-GRSGR 360


>gi|187450441|emb|CAO85519.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450443|emb|CAO85520.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450445|emb|CAO85521.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450447|emb|CAO85522.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450449|emb|CAO85523.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450451|emb|CAO85524.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450453|emb|CAO85525.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450455|emb|CAO85526.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450457|emb|CAO85527.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450459|emb|CAO85528.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450461|emb|CAO85529.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450463|emb|CAO85530.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450465|emb|CAO85531.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450467|emb|CAO85532.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450509|emb|CAO85534.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450511|emb|CAO85535.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450513|emb|CAO85536.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450515|emb|CAO85537.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450517|emb|CAO85538.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450519|emb|CAO85539.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450521|emb|CAO85540.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450523|emb|CAO85541.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450525|emb|CAO85542.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450527|emb|CAO85543.1| ENSANGG00000013284 protein [Anopheles gambiae]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG  S  +++ V+  F++G   +L+AT V   G+DV D   +I  +  +     +H++ 
Sbjct: 115 IHGDKSQTERDYVLQDFRHGKSTILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRI- 173

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           GR GR  +  +    + P   + +   LSVL+
Sbjct: 174 GRTGRCSQYGTAYTFFTPNNGRQARELLSVLE 205


>gi|148560683|ref|YP_001259390.1| excinuclease ABC subunit B [Brucella ovis ATCC 25840]
 gi|148371940|gb|ABQ61919.1| excinuclease ABC subunit B [Brucella ovis ATCC 25840]
          Length = 940

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 146 KSEGGIPIRME----------TSFEPSGDQPTAIRDLMEGLENQDRT-QVLLGVTGSGKT 194

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                 MA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 195 FT----MAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 234


>gi|126698411|ref|YP_001087308.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|306519448|ref|ZP_07405795.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-32g58]
 gi|115249848|emb|CAJ67665.1| putative ATP-dependent RNA helicase [Clostridium difficile]
          Length = 369

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 139/323 (43%), Gaps = 45/323 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I +   G+GKTL  L+ +   +       Q +I++P   LA Q  E   K  ++  + + 
Sbjct: 42  IAEAQTGTGKTLAFLLPIFENISLDINDIQVLILSPTRELAIQITEEAMKLKESKDVSIL 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGV 408
              G      + K L+    G  H+II T     D     +I   KL   ++DE      
Sbjct: 102 AAYGGKDIGSQIKKLK----GNIHMIIATPGRLLDHLNRKTIDLSKLKTFVLDE-----A 152

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            Q L +  K     +L  T+    +TL  ++     I+   +K A R     V++ I + 
Sbjct: 153 DQMLLMGFKNEVEAILKETSNK-KQTLCFSAT----INSQVKKLAYRYTKNPVVVSIQKE 207

Query: 469 DEVIERLK---VVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFT---SS 517
           +  +  +K   V  ++ KK   +C  ++E  ++ F +++      R ++L E       +
Sbjct: 208 EITLNNIKQEVVETTDRKKLDALCKVLDE--DNPFMAIIFCRTKRRVDNLEEALAIRGYN 265

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGL 573
              +H  ++   +E +M SF+N   + LIAT V   G+D+   S I    + E  E +  
Sbjct: 266 CQKLHSDIAQSKRERIMKSFRNLDIQYLIATDVASRGLDISGVSHIYNYDLPETPEDY-- 323

Query: 574 AQLHQLRGRVGR-GEEISSCILL 595
             +H++ GR GR GEE  +C  +
Sbjct: 324 --IHRI-GRTGRAGEEGYTCAFI 343


>gi|70985190|ref|XP_748101.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus fumigatus Af293]
 gi|66845729|gb|EAL86063.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus fumigatus Af293]
          Length = 505

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 147/354 (41%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I +   ++      QA++++
Sbjct: 132 SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSIGILQVIDTVVRETQALVLS 185

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G     +  + + ++ +GQ H++ GT     D
Sbjct: 186 PTRELATQIQSVIMALGDYMNVQCHACIGG---TNIGEDIRKLDYGQ-HVVSGTPGRVAD 241

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT +P      
Sbjct: 242 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT-LP------ 294

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E 
Sbjct: 295 ----YDVLDMTTKFMT-DPVRVLV----------KRDELTL-EGIKQYFIAV---EKEEW 335

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 336 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 393

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 394 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENY----IHRI-GRSGR 442


>gi|323466284|gb|ADX69971.1| Primosomal protein N' (ATP-dependent helicase priA) (Replication
           factor Y) [Lactobacillus helveticus H10]
          Length = 764

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 7/143 (4%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +P +    Q++A+  I + + Q      +L+G  GSGKT V L A+  A+  G  A+++ 
Sbjct: 224 VPVTLNDEQQTALNQINKAIDQHKAETFLLEGITGSGKTEVYLHAIGQALAQGRNALMLV 283

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
           P   L  Q    +K+        V ++   + +  +     RI  G+  +++G   A+F 
Sbjct: 284 PEISLTPQ---MVKQVKARFGDKVAVLHSALSEGEKYDEWRRIRRGEIQVVVGARSAVF- 339

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
             +    + L+++DE+H    +Q
Sbjct: 340 --VPLDNIGLIVIDEEHESSYKQ 360


>gi|323350323|ref|ZP_08085988.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis VMC66]
 gi|322123508|gb|EFX95179.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis VMC66]
          Length = 447

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 149/358 (41%), Gaps = 44/358 (12%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAV 318
           Q+ LR++ F   T  QE  I  +L       R L + +   GSGKT   L+ +  M    
Sbjct: 13  QEALRDLNFVEATPVQEKLIPVVLS-----GRDL-VGESKTGSGKTHTFLLPIFQMLDEE 66

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               QAVI AP   LA Q Y+  ++       +I V    G   +A +   LE     Q 
Sbjct: 67  ADTVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYIGGTDKARQIGKLE---SSQP 123

Query: 377 HIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           HI+IGT     D ++   L +      +VDE         L +   AT   +    A  +
Sbjct: 124 HIVIGTPGRIYDLVESGDLAIHKAKTFVVDE-----ADMTLDMGFLATVDKI----AGRL 174

Query: 432 PRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGK---- 483
           P+ L           K+  +P  +K    P+   I     I + IE   ++ ++G+    
Sbjct: 175 PKDLQFLVFSATIPQKL--QPFLKKYLSNPVIEQIKTKTVIADTIENW-LLSTKGRDKNA 231

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           + Y I   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN 
Sbjct: 232 QIYQISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|313609131|gb|EFR84825.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL F2-208]
          Length = 470

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 131/329 (39%), Gaps = 32/329 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKT    I +A  VE      QA+I+ P   LA Q         +  ++   
Sbjct: 40  VAKSQTGSGKTAAFAIPIAEQVEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAA 99

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
            I G  P A ++  L +    + HI++GT     D I+           L+L  VDE   
Sbjct: 100 AIYGQSPFAKQKLELSQ----KNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLS 155

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G   +++  L++       L  +AT       L      D   I        PI  V +
Sbjct: 156 MGFIDQVEDILSRLPKQRQNLFFSATMPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEM 215

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             +  ++ ++   V+++E   +  I           F +   + + L +      + IHG
Sbjct: 216 QTDNKEKTLK--DVLITENPDSAII-----------FCNTKNQVDELTDLLDVKASKIHG 262

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL--RG 581
            +   D+   MD FK+G  + LIAT V   GIDV + S++I  +        +H++   G
Sbjct: 263 GLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTG 322

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           R G+  +  S +     PL ++    L+V
Sbjct: 323 RAGKSGKAISFVKTNENPLLRDIEEMLNV 351


>gi|312874869|ref|ZP_07734888.1| putative ComF operon protein 1 [Lactobacillus iners LEAF 2053A-b]
 gi|311089614|gb|EFQ48039.1| putative ComF operon protein 1 [Lactobacillus iners LEAF 2053A-b]
          Length = 429

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 139/346 (40%), Gaps = 53/346 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q     D+L  +  +N    ++    G+GKT +   A+   ++ G    +  P   +
Sbjct: 91  TDRQAKVSADLLHAL--QNNQDHLVHAVTGAGKTEMLFKAVEYFLQQGKYVALATPRLDV 148

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             + Y  + +   NT+I          + H + A +     +  II  TH L    ++YY
Sbjct: 149 VNELYPRMCRAFANTKI---------GKYHGKMAQD--PDNEPFIICTTHQL----LKYY 193

Query: 394 KLI-LVIVDEQHRFGVQQRLKL---TQKATAP--HVLLMTATPIPRTLVLTSLGDIDISK 447
           +   L+I+DE   F       L    + A  P      +TATP    L     G++  S 
Sbjct: 194 QAFDLIIIDEVDAFPYVNNPMLYYGAKNAIKPTGQTFYLTATPSKDMLTKVKNGEMGYSL 253

Query: 448 ITEKPAG------------RKPIK-TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + ++  G            RK I    + P      +I+ L  + + GK      P+I E
Sbjct: 254 LQQRFHGGLLAVPEEYLFWRKYISGESLHPF-----LIKVLNEITNSGKPLLVFVPRIAE 308

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                    +  + ++ +   S + I     SD +++  ++ F+N    +L+ TT++E G
Sbjct: 309 ---------LGLYQTILQKKYSQLVIASVHSSDKNRQQKVEQFRNREISILLTTTILERG 359

Query: 555 IDVVDASIIIIENAEH-FGLAQLHQLRGRVGRG--EEISSCILLYH 597
           +      +I+I   +  +  A L Q+ GRVGR   +++   I  YH
Sbjct: 360 VTFPGVQVIVIAADDAIYTTAGLVQIAGRVGRAATDQVGRVIFCYH 405


>gi|262280249|ref|ZP_06058033.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Acinetobacter calcoaceticus RUH2202]
 gi|262258027|gb|EEY76761.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Acinetobacter calcoaceticus RUH2202]
          Length = 640

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 143/368 (38%), Gaps = 60/368 (16%)

Query: 263 QKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           Q+ L  + F+ PT  QE AI   L+          ++    GSGKT   L+    A+ AG
Sbjct: 15  QQALEGLGFTTPTTVQEQAIPAALEGKDL------LVSSQTGSGKTAAFLLPTLNAL-AG 67

Query: 322 GQAVI----------------MAPIGILAQQ-HYEFIKKYTQNTQIIVEIITGNMPQAHR 364
            ++V+                ++P   LAQQ   + I        + +  I G MP A +
Sbjct: 68  QESVVPFKDRMKAVTQPNILVISPTRELAQQVSQDAIALVRHMKGVRIAAIMGGMPFAKQ 127

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLTQ 416
            + L+      A +++ T     D +   ++ L     +IVDE  R    G  + L+   
Sbjct: 128 IQQLK-----GAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 417 K--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
           +  A     L+ +AT   R + L S    D  +I  +        T I       +  E 
Sbjct: 183 ELAANRKQTLMFSATFADRIIRLASCMMKDPMRIAIETG--HSTNTDITQTLHWTDGFEH 240

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKE 531
            K +L+     +W+  +  ++    F S  E  + L E       S+  +HG M    + 
Sbjct: 241 KKKLLT-----HWLSDENLDQA-VVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRN 294

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR----GRVGRGE 587
             + S + G  K+L+AT V   G+DV   S +I     +FGL   H+      GR GR  
Sbjct: 295 RRLRSIREGRAKILVATDVAARGLDVPTISHVI-----NFGLPMKHEDYVHRIGRTGRAG 349

Query: 588 EISSCILL 595
                I L
Sbjct: 350 RTGQAITL 357


>gi|229065471|ref|ZP_04200719.1| ATP-dependent RNA helicase [Bacillus cereus AH603]
 gi|228715789|gb|EEL67561.1| ATP-dependent RNA helicase [Bacillus cereus AH603]
          Length = 450

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPDSKQTMLFSAT-MPK----------DIKKLAKRYMEEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRVSKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNFDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|237808150|ref|YP_002892590.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237500411|gb|ACQ93004.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 468

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 124/319 (38%), Gaps = 35/319 (10%)

Query: 302 VGSGKTLVALIAMA-------AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L+ +        A    G +A+I+AP   LA+Q Y  ++     TQ+   +
Sbjct: 47  TGSGKTLAYLLPLMHRLLTSRALSTRGPRALILAPTRELAKQVYAQLRFLVAGTQVHCSL 106

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHR---F 406
           + G      + KAL +       I++ T     + L   S  +  + ++++DE  R    
Sbjct: 107 VLGGENFNDQIKALRKTPE----ILVATPGRLLNHLTARSFLFDGVEILVLDEADRMLDL 162

Query: 407 GVQQRLKLTQKATAPHVL----LMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIK 459
           G    LK    A A H L    L +AT   +++ + S   L       I E  A    I 
Sbjct: 163 GFADALKAIHSA-ASHRLRQTWLFSATLNNQSVEMLSGYILKAPQSISIGEMHAIHADIN 221

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            V    + +D     LK +LS+      I            R   ER    +        
Sbjct: 222 EVFHLCDHLDHKQALLKHLLSQPDYQQAIVFLAT-------REDTERLAKQYSELNIPAL 274

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + G M    +  V+D F  G  K+L  T V   G+D++  S+++  +        +H++
Sbjct: 275 ALSGDMKQAQRNQVIDQFSRGHAKVLFTTDVAARGLDLLHVSLVVNFDMPKLPEEYIHRI 334

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR     + + L  P
Sbjct: 335 -GRTGRAGNQGNAVSLISP 352


>gi|195978649|ref|YP_002123893.1| comF operon protein A ComFA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975354|gb|ACG62880.1| comF operon protein A ComFA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 440

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 135/324 (41%), Gaps = 44/324 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++    G+GKT +   A+AA V  GG   I +P   +     E  K+ +++    V ++ 
Sbjct: 117 LVHAVTGAGKTEMMYEAIAAVVNKGGWVCIASPRVDVC---IELEKRLSRDFSCQVCLM- 172

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                     A   + H    I+  TH L      Y+   L+I+DE   F      +L  
Sbjct: 173 ---------HAESEVYHRSPIIVATTHQLMTF---YHAFDLLIIDEVDAFPFVNNRQLN- 219

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDIS-KITEKP------AGRKPIKTVIIP-INRI 468
                H     A     T+ LT+    D+  K+ +K       A R   K +++P   R+
Sbjct: 220 -----HAAHQAAKADAVTVYLTATSTRDLERKVKQKELVKLTLARRFHGKPLVVPKYQRL 274

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV--------ERFNSLHEHFTSSIAI 520
             ++E     ++ GK        +++++ + +  ++        E+   L + +     I
Sbjct: 275 FSLLE----AINRGKLPRRFITLVKKQRATGYPLLIFFPIIELAEQCCQLLQKYFPKETI 330

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI-IIIENAEHFGLAQLHQL 579
            H      ++ ++++ F+ G   +LI+TT++E G+      + +++ N   +  + L Q+
Sbjct: 331 AHASSQSSNRMAIIEQFRQGQITILISTTILERGVTFPTVDVFVLLANHRLYTSSSLIQI 390

Query: 580 RGRVGRG-EEISSCILLYHPPLSK 602
            GRVGR  E     +L +H  +S+
Sbjct: 391 SGRVGRSLERPEGQVLFFHDGISQ 414


>gi|114704563|ref|ZP_01437471.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Fulvimarina pelagi HTCC2506]
 gi|114539348|gb|EAU42468.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Fulvimarina pelagi HTCC2506]
          Length = 508

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 145/340 (42%), Gaps = 50/340 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI   L+    +  +L I Q   G+GKT   ++ M   +E G       + +I
Sbjct: 25  PTPIQAEAIPHALE----RRDVLGIAQ--TGTGKTASFVLPMLTMLEKGRARARMPRTLI 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   +Y +  ++ V ++ G M    + K L+R       ++I T    
Sbjct: 79  IEPTRELAAQVEESFARYGKEQKLNVALLIGGMSFEEQDKKLDR----GCDVLIATPGRL 134

Query: 387 QDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPR-TLVLTS 439
            D  +  KL+L     +++DE  R        +      P +  +    P  R TL  ++
Sbjct: 135 LDHFERGKLLLTGVEILVIDEADR--------MLDMGFIPDIERICKLLPFTRQTLFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKT-VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               +I+K+T++   + P++  V  P +    V +RL   ++ G K Y    ++ +   +
Sbjct: 187 TMPPEITKLTQQFL-QNPVRVEVAKPASAALTVEQRL---VASGAKDYDKRARLRDLLRA 242

Query: 499 NF------------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           N             R V   F SL +H  S+ A+ HG M    + +++ +F+    +LL+
Sbjct: 243 NEDVTNAIIFCNRKRDVSTLFRSLEKHGFSAGAL-HGDMDQRARMTMLHNFREDKLQLLV 301

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           A+ V   G+D+   S +   +        +H++ GR GR 
Sbjct: 302 ASDVAARGLDIPAVSHVFNFDVPIHAEDYVHRI-GRTGRA 340


>gi|325697687|gb|EGD39572.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK160]
          Length = 447

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 149/358 (41%), Gaps = 44/358 (12%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAV 318
           Q+ LR++ F   T  QE  I  +L       R L + +   GSGKT   L+ +  M    
Sbjct: 13  QEALRDLNFVEATPVQEKLIPVVLS-----GRDL-VGESKTGSGKTHTFLLPIFQMLDEE 66

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               QA+I AP   LA Q Y+  ++       +I V    G   +A +   LE     Q 
Sbjct: 67  ADSVQALITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQIGKLE---SSQP 123

Query: 377 HIIIGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           HI+IGT     D ++      +K    +VDE         L +   AT   +    A  +
Sbjct: 124 HIVIGTPGRIYDLVESGDLAIHKAKTFVVDE-----ADMTLDMGFLATVDKI----AGRL 174

Query: 432 PRTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGK---- 483
           P+ L           K+  +P  +K    P+   I     I + IE   ++ ++G+    
Sbjct: 175 PKDLQFLVFSATIPQKL--QPFLKKYLSNPVIEQIKTKTVIADTIENW-LLSTKGRDKNA 231

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           + Y I   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN 
Sbjct: 232 QIYQISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNL 291

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 292 DFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|300857956|ref|YP_003782939.1| hypothetical protein cpfrc_00538 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685410|gb|ADK28332.1| hypothetical protein cpfrc_00538 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205685|gb|ADL10027.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330237|gb|ADL20431.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275920|gb|ADO25819.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis I19]
          Length = 441

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 24/138 (17%)

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A +HG +    +E  +  F+NG   +L+AT V   G+D+ D + +I        +  +H
Sbjct: 281 VAGVHGDLGQAARELSLGMFRNGRVDILVATDVAARGLDIDDVTHVINYQTPDAPMTYVH 340

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           ++ GR GR     + I L         Y  L   K      LI++E          LG+ 
Sbjct: 341 RI-GRTGRAGHTGTAITLV-------GYDELIKWK------LISDE----------LGLD 376

Query: 638 QSGMPKFLIAQPELHDSL 655
               P++    PEL D+L
Sbjct: 377 TPAPPQWFSTSPELFDAL 394


>gi|187450507|emb|CAO85533.1| ENSANGG00000013284 protein [Anopheles gambiae]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG  S  +++ V+  F++G   +L+AT V   G+DV D   +I  +  +     +H++ 
Sbjct: 115 IHGDKSQTERDYVLQDFRHGKSTILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRI- 173

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           GR GR  +  +    + P   + +   LSVL+
Sbjct: 174 GRTGRCSQYGTAYTFFTPNNGRQARELLSVLE 205


>gi|18313246|ref|NP_559913.1| ATP-dependent helicase [Pyrobaculum aerophilum str. IM2]
 gi|18160766|gb|AAL64095.1| ATP-dependent helicase [Pyrobaculum aerophilum str. IM2]
          Length = 744

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 70/345 (20%), Positives = 144/345 (41%), Gaps = 42/345 (12%)

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALI-AMAAAVEA--GGQAVIMAPIGILAQQHYE 339
           D +Q +  K     ++    G GKT   LI  + +++E+  G  A+++ P   LA+    
Sbjct: 58  DAIQSIRAKRDT--VIVAGTGMGKTEAFLIPVLESSLESLGGPVALVLYPTKALARDQLA 115

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY------ 393
             +KY     + V +  G+ PQ  RR   +       H+II    +   ++ +       
Sbjct: 116 RFRKYGDRLGVRVMVYDGDTPQRERRILYDM----PPHVIISNPDMVSQALMHVAKFREL 171

Query: 394 --KLILVIVDEQHRFG------VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             ++  V++D+ H +       +   LK  ++   P  +  +AT         SL D D 
Sbjct: 172 LKRVRYVVLDDFHVYAGVFGSHMYYLLKRLRRFVRPVFIATSATVGNPAEFAQSLFDSDR 231

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIE--RLKVVLSEGKKAYWICPQIEEK-----KES 498
             +   P GR+          R+ +V+   R +   +E  +   +C + + K        
Sbjct: 232 VNVVWGPLGRR---------GRLVQVLARPRFRSKWAEAARLASLCLEHDMKCLVFTDSH 282

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            +  ++ R   +       +A+    +   ++++V ++FK G   ++I+T  +E+GID+ 
Sbjct: 283 RYSEIIYRALRMGGA-GDRVAVHRAGLDPEERKNVEEAFKRGDIDVVISTPTLELGIDIG 341

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPLSK 602
           D    ++ +        L ++ GRVGR  +    I +L + P+S+
Sbjct: 342 DVDAAVLASIPPSYNRYLQRI-GRVGRRGQTGYVIQILGNDPISQ 385


>gi|332531386|ref|ZP_08407291.1| DEAD/DEAH box helicase domain-containing protein [Hylemonella
           gracilis ATCC 19624]
 gi|332039170|gb|EGI75591.1| DEAD/DEAH box helicase domain-containing protein [Hylemonella
           gracilis ATCC 19624]
          Length = 468

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 136/308 (44%), Gaps = 36/308 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I Q   GSGKT    +A+ A ++A     Q++++ P   LA Q    I++  +    I V
Sbjct: 50  IAQAKTGSGKTAAFALALLAKLDARRFAVQSLVLCPTRELADQVTTEIRRLARAEDNIKV 109

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G +P   +  +LE   HG AH+++GT     D ++   L L     +++DE  R  
Sbjct: 110 VTLAGGVPLRGQAASLE---HG-AHVVVGTPGRVIDHLERGNLGLDALATLVLDEADRML 165

Query: 407 ---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
               V   +K+ ++  A    L+ +   P            I+K+  +   R+P+ TV +
Sbjct: 166 DMGFVDDIVKVARQCPAQRQTLLFSATYPE----------GIAKLAAQFL-REPV-TVKV 213

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---S 517
                 E IE+    + E ++   +   +E  +  +   F +   R   L E   +   S
Sbjct: 214 QAQHGSEQIEQRWYEVREEQRLPGVARLLEHFRPVSTLAFCNTKARCRELAELLQAQGYS 273

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              +HG +   +++ V+  F N +C +L+AT V   G+D+   + +I  +      A +H
Sbjct: 274 ALALHGDLEQRERDQVLVRFANSSCSVLVATDVAARGLDIAGLAAVINVDTSPDPQAYVH 333

Query: 578 QLRGRVGR 585
           ++ GR GR
Sbjct: 334 RI-GRTGR 340


>gi|296133301|ref|YP_003640548.1| primosomal protein N' [Thermincola sp. JR]
 gi|296031879|gb|ADG82647.1| primosomal protein N' [Thermincola potens JR]
          Length = 829

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 92/214 (42%), Gaps = 24/214 (11%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMS----QKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            R + + P K   S   ++L D+S    +    + +L G  GSGKT V L A+  A+  G
Sbjct: 276 CRPVEYEPPKQLTSEQAEVLADISCSIERGTSDVFLLHGATGSGKTEVYLQAIDKALIMG 335

Query: 322 GQAVIMAPIGILAQQHYEFIK-KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+ + P   L  Q  + ++ ++ +     V ++   +    R     +I  G   +++
Sbjct: 336 KQAIFLVPEIALTPQMVQRVRGRFGEK----VAVLHSALSLGERFDQWRQIKEGAVQVVV 391

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTAT 429
           G  +     +   KL L+IVDE+H    +Q            +  ++ A  P V+L +AT
Sbjct: 392 GARSAVFAPVP--KLGLIIVDEEHESTYKQEENPKYHAREVAIYRSRMAGCP-VILGSAT 448

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           P   +  L   G   +  +  +  G +P+  V I
Sbjct: 449 PSVESYYLAREGKYKLKTMPNR-IGNRPMPEVHI 481


>gi|284162567|ref|YP_003401190.1| DEAD/DEAH box helicase [Archaeoglobus profundus DSM 5631]
 gi|284012564|gb|ADB58517.1| DEAD/DEAH box helicase domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 767

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 3/111 (2%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++AI  G +    +  V  +F+ G  K ++AT  +E+GID+ D  ++I   +E    +Q 
Sbjct: 327 NVAIHKGGLPKDVRTEVEKAFREGKVKTVVATPTLELGIDIGDVDVVI---SELVSYSQF 383

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            Q  GR GR  + S  ILL     + ++Y RL      +D F    E + +
Sbjct: 384 LQRVGRAGRMGQESIGILLLRDDDAISNYYRLKPEDYFKDDFYCYAEKMNE 434


>gi|262401965|ref|ZP_06078530.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio sp. RC586]
 gi|262351937|gb|EEZ01068.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio sp. RC586]
          Length = 734

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    S +     +L+G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 199 PKLNQEQAIA-IAAVNSHQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 258 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 312 FAKLGIIIVDEEHDGSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 372 KYHHLQLTQRAGNALPTRN 390


>gi|255642429|gb|ACU21478.1| unknown [Glycine max]
          Length = 413

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 122/314 (38%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H ++GT           +L  D I+ +  +L   DE 
Sbjct: 141 ACVGGTSV----REDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDCIKMF--VLDEADEM 194

Query: 404 HRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++        +   V + +AT  P  L +T        K   KP        V
Sbjct: 195 LSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR-------KFMNKP--------V 239

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K       K  W    + +  E+          N R  V+      
Sbjct: 240 RILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 299

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 300 RSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 359

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 360 PENYLHRI-GRSGR 372


>gi|228985558|ref|ZP_04145712.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774135|gb|EEM22547.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 454

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 138/318 (43%), Gaps = 53/318 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+ +   +   +D  ++ +  +    + T+ 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIE 220

Query: 463 IPINRIDEVIER-----LKVVLSEGKK--AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
               R+ E  +R     L+ V+   +   A   C           R+ V R + L+++  
Sbjct: 221 ---QRVIETTDRAKPDALRFVMDRDQPFLAVIFC-----------RTKV-RASKLYDNLK 265

Query: 516 S---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENA 568
               + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ 
Sbjct: 266 GLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDV 325

Query: 569 EHFGLAQLHQLRGRVGRG 586
           E +    +H++ GR GR 
Sbjct: 326 ESY----IHRI-GRTGRA 338


>gi|225680342|gb|EEH18626.1| DNA helicase [Paracoccidioides brasiliensis Pb03]
          Length = 1199

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 135/341 (39%), Gaps = 49/341 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA--PIGILAQQHYEFIKK---YTQNTQ-I 350
           I+     SGK+L+  + M   +E   Q+  M   P   LAQ     +K+   Y +  +  
Sbjct: 415 IVSTSTSSGKSLIYQVPMLHELEQDPQSRGMYIFPTKALAQDQRRSLKELLGYIEGLEHT 474

Query: 351 IVEIITGNMPQAHRRKALE--RIAHGQA---HIIIGTHALFQDSIQYY--KLILVIVDEQ 403
           +VE   G+ P   R    +  RI        HI I  H   + S + +   L  V+VDE 
Sbjct: 475 LVETFDGDTPMEDRNTIRDEARIIFTNPDMLHITILPH---ESSWRTFLKNLKFVVVDEL 531

Query: 404 HRFG---------VQQRLKLTQKATAP-HVLLMT-----ATPIPRTLVLTSLGDIDISKI 448
           H +          V +RL+    A    HV  ++     A P      +  + D+ ++ I
Sbjct: 532 HVYNGLFGSHIAFVMRRLRRVCAAVGNRHVRFISCSATVANPEEHMRTIFGIDDVKLTDI 591

Query: 449 TEKPAGRKPIKTVIIP-----------INRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
              P+GRK       P           +N I E       ++  G +    C +I ++ E
Sbjct: 592 DGSPSGRKEFICWNTPFRDPGDPSSGRVNSIRETACLFCQLILRGVRVIAFC-RIRKQCE 650

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIH-GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +V + F +L     S   + + G  S  D+  +      G    ++AT  +E+G+D
Sbjct: 651 LLLSAVRDEFRNLDRPSVSKFVMGYRGGYSPQDRRKIERDMFEGKLLGIVATNALELGVD 710

Query: 557 V--VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +  +DA I +      + ++ L Q  GR GR  + S  IL+
Sbjct: 711 IGSLDAVITL---GFPYSISNLRQQSGRAGRRNKDSVSILV 748


>gi|218704863|ref|YP_002412382.1| ATP-dependent RNA helicase DbpA [Escherichia coli UMN026]
 gi|293404872|ref|ZP_06648864.1| ATP-dependent RNA helicase DbpA [Escherichia coli FVEC1412]
 gi|298380516|ref|ZP_06990115.1| ATP-independent RNA helicase DbpA [Escherichia coli FVEC1302]
 gi|300900110|ref|ZP_07118304.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|331672872|ref|ZP_08373658.1| ATP-independent RNA helicase DbpA [Escherichia coli TA280]
 gi|218431960|emb|CAR12845.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           UMN026]
 gi|291427080|gb|EFF00107.1| ATP-dependent RNA helicase DbpA [Escherichia coli FVEC1412]
 gi|298277958|gb|EFI19472.1| ATP-independent RNA helicase DbpA [Escherichia coli FVEC1302]
 gi|300356389|gb|EFJ72259.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|331070093|gb|EGI41462.1| ATP-independent RNA helicase DbpA [Escherichia coli TA280]
          Length = 457

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|21555870|gb|AAM63951.1| Eukaryotic initiation factor 4A, putative [Arabidopsis thaliana]
          Length = 412

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 128/314 (40%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 80  IQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 139

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 140 ACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMF--VLDEADEM 193

Query: 404 HRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++    +   P   V + +AT  P  L +T        K   KP        V
Sbjct: 194 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMSKP--------V 238

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYW----ICPQIEE---KKESNFRSVVERFNSLHEHF 514
            I + R +  +E +K      +K  W    +C   E     +   F +   + + L +  
Sbjct: 239 RILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKXDWLTDKM 298

Query: 515 TS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            S   +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 299 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQ 358

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 359 PENYLHRI-GRSGR 371


>gi|115438787|ref|NP_001043673.1| Os01g0639100 [Oryza sativa Japonica Group]
 gi|75321708|sp|Q5VNM3|RH2_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 2
 gi|55297015|dbj|BAD68586.1| putative nicotiana eukaryotic translation initiation factor 4A
           [Oryza sativa Japonica Group]
 gi|55297606|dbj|BAD68952.1| putative nicotiana eukaryotic translation initiation factor 4A
           [Oryza sativa Japonica Group]
 gi|113533204|dbj|BAF05587.1| Os01g0639100 [Oryza sativa Japonica Group]
 gi|215707106|dbj|BAG93566.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222618929|gb|EEE55061.1| hypothetical protein OsJ_02769 [Oryza sativa Japonica Group]
          Length = 404

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 129/312 (41%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT +  +++   V+      QA+I++P   LA Q    +        I V 
Sbjct: 72  IAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVH 131

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRF-- 406
              G        + LE   HG  H++ GT     D I+   L      L+I+DE      
Sbjct: 132 ACIGGKSIGEDIRKLE---HG-VHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLG 187

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V L++AT     L +TS       K    P        V I
Sbjct: 188 RGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTS-------KFMTDP--------VRI 232

Query: 464 PINRIDEVIERLKVVLSEGKKAYW----ICPQIEEKKESN---FRSVVERFNSLHEHFTS 516
            + R +  +E +K      +K  W    +C   +    +    F +   + + L E   S
Sbjct: 233 LVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRS 292

Query: 517 ---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++ +HG M   +++++M  F++G  ++LI T V   G+DV   S++I  +  +   
Sbjct: 293 NNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRE 352

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 353 LYIHRI-GRSGR 363


>gi|331005998|ref|ZP_08329341.1| Helicase PriA essential for oriC/DnaA-independent DNA replication
           [gamma proteobacterium IMCC1989]
 gi|330420174|gb|EGG94497.1| Helicase PriA essential for oriC/DnaA-independent DNA replication
           [gamma proteobacterium IMCC1989]
          Length = 750

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 21/152 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT + L  +   +  G QA+++ P IG+  Q     + ++ Q   + V  +
Sbjct: 240 LLDGVTGSGKTEIYLQTIQKVINKGQQALVLVPEIGLTPQT----VSRFQQRFNVPVATL 295

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR--L 412
              M    R  A +    G   IIIGT  ++F     +  L L+IVDE+H    +Q+  +
Sbjct: 296 HSGMNDKQRLFAWQDAKAGLTPIIIGTRSSVF---TPFPNLGLIIVDEEHDLSYKQQDGV 352

Query: 413 KLTQKATA---------PHVLLMTATPIPRTL 435
           + + + TA         P ++L +ATP   TL
Sbjct: 353 RYSARDTAIVRAQQQNIP-IILGSATPALETL 383


>gi|319783267|ref|YP_004142743.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169155|gb|ADV12693.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 520

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 132/312 (42%), Gaps = 47/312 (15%)

Query: 302 VGSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            G+GKT   ++ M   +E G       + +I+ P   LA Q  E   +Y +N ++ + ++
Sbjct: 47  TGTGKTASFVLPMLTRLENGRARARMPRTLILEPTRELAAQVEENFIRYGKNHKLNIALL 106

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---- 406
            G +    + K LER       ++I T     D  +  KL+L     +++DE  R     
Sbjct: 107 IGGVSFDEQNKKLER----GVDVLIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMG 162

Query: 407 ------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLT-----SLGDIDISKITEKPAG- 454
                  + + +  T++      L  +AT  P    LT     +   +++SK        
Sbjct: 163 FIPDIERICEMIPFTRQ-----TLFFSATMPPEITKLTEKFLHAPVRVEVSKAASAATNI 217

Query: 455 -RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            ++ +K+   P ++ + +   +K   +E K A   C +  E  E  FRS+++        
Sbjct: 218 TQRLVKSGSKPWDKRETLRNLIKAEDAELKNAIIFCNRKIEVSEL-FRSLLK-------- 268

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           +      +HG M    +  ++ +F++G  + L+A+ V   G+D+ D S +   +      
Sbjct: 269 YDFDAGALHGDMDQRARMQMLANFRDGKLRYLVASDVAARGLDIPDVSHVFNYDVPIHAE 328

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 329 DYVHRI-GRTGR 339


>gi|304437212|ref|ZP_07397172.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369704|gb|EFM23369.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 426

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 142/348 (40%), Gaps = 48/348 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           PT  QE AI  +     +  R + I Q   G+GKTL  L+ + A ++   A  QA+++AP
Sbjct: 25  PTPVQEQAIPPM-----RAGRDV-IAQAQTGTGKTLAYLLPLLARIKPQGAAAQALVIAP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q     +   Q   I   +I G      +++ L R       ++IGT     D 
Sbjct: 79  TRELAIQIERVAEPLAQPLGIGTVVIYGGADIERQKEKLRR----SPQLVIGTPGRLLDH 134

Query: 390 IQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           ++          K++L   DE  + G  + ++    A A    + L +AT   R + LT 
Sbjct: 135 VRRGTLALGSVNKVVLDEADEMLKMGFIEDVETLLGAAAQDYQLALFSATMPERIVRLT- 193

Query: 440 LGDIDISKITEKPAG-RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                  +    PA  R   +TV +        IE++ + +S G K   +C  I E  E+
Sbjct: 194 ------KRFMTNPAHIRLAGETVTL------AAIEQVVIPVSAGDKLDRLCASINE--EA 239

Query: 499 NFRSVV-----ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            + ++V     ER  +L          +  + G ++   +  V+  F++   ++L AT +
Sbjct: 240 PYLAMVFCATKERTRALMMELAQRGYLVDALSGDLTQTQRSFVLRQFRSAKLQILCATDI 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   + +   +        +H++ GR GR       I L  P
Sbjct: 300 AARGLDIEGVTHVYNYDLPPTVTDYIHRI-GRTGRAGTQGKAITLVAP 346


>gi|301066672|ref|YP_003788695.1| primosomal protein N' [Lactobacillus casei str. Zhang]
 gi|300439079|gb|ADK18845.1| Primosomal protein N' (replication factor Y) - superfamily II
           helicase [Lactobacillus casei str. Zhang]
          Length = 805

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 19/179 (10%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q + + +P +P   Q++ +  I   +++++    +L+G  GSGKT V L  +A  + AG 
Sbjct: 261 QPLTKPLPLTP--EQQTIVTQINAAVAERDPKTFLLEGVTGSGKTEVYLQVIARVLAAGQ 318

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   L  Q    + +        V ++   +    +     RIA G+A +++G 
Sbjct: 319 TALMLVPEIALTPQ---MVNRVKGRFGTHVAVMHSGLSDGEKYDEWRRIARGEAQVVVGA 375

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATP 430
            +     ++   + + I+DE+H    +Q            LK  Q   AP V+L +ATP
Sbjct: 376 RSAAFAPLK--NIGVFIMDEEHETSYKQDSAPRYHARDVLLKRAQIHHAP-VVLGSATP 431


>gi|283470043|emb|CAQ49254.1| helicase domain protein [Staphylococcus aureus subsp. aureus ST398]
          Length = 360

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 159/363 (43%), Gaps = 74/363 (20%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++ F  ++ Q  A + I++ +  +  +L  L    G+GKT +    +  A   G    I+
Sbjct: 22  HLSFELSEQQSYASEHIVRAIRMRQTIL--LYAVTGAGKTEMMFQGIQYARRQGDNIAIV 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA------HIIIG 381
           +P                    ++VEI +  +  A   + ++ I H Q+      H ++ 
Sbjct: 80  SP-----------------RVDVVVEI-SKRIKDAFLNEDID-ILHQQSSQQFEGHFVVC 120

Query: 382 T-HALFQDSIQYYKLILVIVDEQHRF------GVQQRLKLTQKATAPHVLLMTATPIPRT 434
           T H L++   Q++  I +  DE   F       +QQ LK + K      + MTATP P+ 
Sbjct: 121 TVHQLYRFK-QHFDTIFI--DEVDAFPLSMDKSLQQALKSSSKIEHA-TIYMTATP-PKQ 175

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPI--------NRIDEVIERLKVVLSEGKKAY 486
           L    L +I    I + PA R   K++ +P         N+I +++ R+           
Sbjct: 176 L----LSEIPHENIIKLPA-RFHKKSLPVPKYRYFKLNNNKIQKMLYRI----------- 219

Query: 487 WICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            +  QI  ++ +     N  ++++ F S+++   + +  +H    D+ +   ++  +NG 
Sbjct: 220 -LQDQINNQRYTLVFFNNIETMIKTF-SVYKQKITKLTYVHS--EDVFRFEKVEQLRNGQ 275

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI-SSCILLYHPPL 600
             ++  TT++E G  + +  +++I+ A  +    L Q+ GRVGR  E  +  +L +H  +
Sbjct: 276 FDVIFTTTILERGFTMANLDVVVID-AHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGV 334

Query: 601 SKN 603
           S N
Sbjct: 335 SMN 337


>gi|228988681|ref|ZP_04148767.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771132|gb|EEM19612.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 481

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 143/340 (42%), Gaps = 47/340 (13%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS-KITEKPAG--RKPIKT 460
             F  Q    + +  T    +L +AT +P  +   S   ++    I  K AG     I+ 
Sbjct: 161 MGFIDQVEAIIDELPTKRMTMLFSAT-LPEDVERLSRTYMNAPIHIEIKAAGITTDKIEH 219

Query: 461 VIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            +  + R +E +  LK V + E   +  I  + +E  +  +R +  R N   +       
Sbjct: 220 TLFEV-REEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYRQL-NRVNYPCDK------ 271

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      + +H+ 
Sbjct: 272 -IHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRT 330

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            GR GR               + NS   ++ + + ED FL
Sbjct: 331 -GRTGR---------------AGNSGKAITFITSYEDRFL 354


>gi|229019066|ref|ZP_04175904.1| Primosomal protein N' [Bacillus cereus AH1273]
 gi|229025310|ref|ZP_04181729.1| Primosomal protein N' [Bacillus cereus AH1272]
 gi|228736001|gb|EEL86577.1| Primosomal protein N' [Bacillus cereus AH1272]
 gi|228742234|gb|EEL92396.1| Primosomal protein N' [Bacillus cereus AH1273]
          Length = 771

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA ++ G +A+++ P
Sbjct: 232 PFPLTEEQKQVITPILSSIANETYNPFLLYGVTGSGKTEVYLQSIAAVLKKGKEAIVLVP 291

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++     ++   ++        RK L +    +  +++G   A+F 
Sbjct: 292 EIALTPQMVDRFKGRFGSQVAVLHSALSVGEKYDEWRKILRK----EVKVVVGARSAIFA 347

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 348 P---FENLGIIIIDEEHESSYKQ 367


>gi|225680931|gb|EEH19215.1| ATP-dependent RNA helicase eIF4A [Paracoccidioides brasiliensis
           Pb03]
          Length = 375

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 124/294 (42%), Gaps = 58/294 (19%)

Query: 302 VGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           V +GKT    I+    V+      QA+I+AP   LAQQ  + +        I      G 
Sbjct: 48  VRTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGG 107

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDE-----QHRFGV 408
           +      KAL+        +++GT     D IQ   L      + ++DE      H F  
Sbjct: 108 ISVRDDMKALQE----GPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSHGFTE 163

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           Q          +  V+L++AT +P+          D+ ++T K   R P++ ++      
Sbjct: 164 QIYDIFQFLPQSTQVVLLSAT-MPQ----------DVLEVTTKFM-RDPVRILV------ 205

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------RFNSLHEH 513
               ++ ++ L EG K ++I  + EE K      + E               + + L + 
Sbjct: 206 ----KKAELTL-EGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDK 260

Query: 514 FTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 261 LTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 314


>gi|109092953|ref|XP_001085678.1| PREDICTED: eukaryotic initiation factor 4A-I-like isoform 7 [Macaca
           mulatta]
          Length = 406

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 129/299 (43%), Gaps = 57/299 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQMEAPHIIMGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+ ++ 
Sbjct: 190 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIRILVK 237

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------RFN 508
                    E L +   EG   ++I  + EE K      + E               + +
Sbjct: 238 K--------EELTL---EGICQFYINVEREEWKLDTLCDLYETLTITQAVIFINTQRKVD 286

Query: 509 SLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            L E   +   +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 287 WLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 345


>gi|62290669|ref|YP_222462.1| primosome assembly protein PriA [Brucella abortus bv. 1 str. 9-941]
 gi|62196801|gb|AAX75101.1| primosomal protein N [Brucella abortus bv. 1 str. 9-941]
          Length = 748

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           ++ Q++A + + + +      + +L G  GSGKT V   A+A A++AG Q +I+ P   L
Sbjct: 212 SQDQQAAAEMLSEAVEAGGFSVSLLDGVTGSGKTEVYFEAVAKALDAGRQVLILLPEIAL 271

Query: 334 AQQHYE-FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
            QQ  + F  ++             ++    R +   ++A G   ++ G   ALF   + 
Sbjct: 272 TQQFLDRFHDRFHDRFGAKPAEWHSDLAPRTRERVWRQVAEGTVRVVAGARSALF---LP 328

Query: 392 YYKLILVIVDEQHRFGVQQ 410
           + +L L++VDE+H    +Q
Sbjct: 329 FKELGLIVVDEEHDPAYKQ 347


>gi|328717963|ref|XP_001951743.2| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 556

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 135/337 (40%), Gaps = 43/337 (12%)

Query: 302 VGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     +          G   ++++P   LAQQ       +     +   
Sbjct: 147 TGSGKTLSYIVPALIHISHQRKLSRGDGPIVLVLSPTRELAQQIQTVCDDFGDAFGVSST 206

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR--- 405
            + G  P+  +   L R       ++I T     D ++       +   +++DE  R   
Sbjct: 207 CLFGGAPKGGQASDLSR----GVELVIATPGRLLDFLESERTNMCRCTYLVLDEADRMLD 262

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRKP 457
             F  Q R  + Q      VL+ +AT  P+ +       L     I+I  +T   A    
Sbjct: 263 MGFEPQIRKIIDQIRPDRQVLMWSAT-WPKEVKNLAEEFLDEYIQINIGSLT--LAANHN 319

Query: 458 IKTVIIPINRIDE---VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           I+ ++      D+   +I  LK ++ E +    +   IE K     R V E    +  H 
Sbjct: 320 IQQIVEVCQEYDKETKLISLLKKIMDEDENKTIVF--IETK-----RRVDEITRKIKRHG 372

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            S++ I HG  S  ++++V+  F++    +L+AT V   G+DV D   +I  +  +    
Sbjct: 373 YSAVCI-HGDKSQYERDNVLKDFRDSRYPILVATDVAARGLDVEDVKFVINFDYPNNSED 431

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            +H++ GR GR  +  +    +    +K +   +SVL
Sbjct: 432 YVHRI-GRTGRSHKTGTAYTFFTQSNAKQAADLVSVL 467


>gi|315224756|ref|ZP_07866579.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga
           ochracea F0287]
 gi|314945384|gb|EFS97410.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga
           ochracea F0287]
          Length = 584

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 148/351 (42%), Gaps = 57/351 (16%)

Query: 264 KILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAA 316
           K + ++ F +P++ Q+ AI  +L + +    M+ + Q   G+GKT      L+ LI   +
Sbjct: 15  KAISDMGFETPSEIQQKAIPTLLANGAD---MVALAQ--TGTGKTATFGFPLLQLIDTDS 69

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQ 375
            V    Q +I++P   L  Q    ++ Y +  T++ V  + G      + ++L++     
Sbjct: 70  RVT---QGLILSPTRELCLQIASELRNYAKYLTKVNVVAVYGGASIEEQARSLKK----G 122

Query: 376 AHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T    QD I+            +L   DE    G  + +            +++
Sbjct: 123 AQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDI----------TAILS 172

Query: 428 ATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
            TP  + T + ++    +++KI  K   RKPI+  +   N+    ++    ++S G+  Y
Sbjct: 173 HTPQEKSTWLFSATMPNEVAKIARKFM-RKPIEITVGTRNQATNTVQHEYYIVS-GRHRY 230

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSI-------AIIHGRMSDIDKESVMDSFKN 539
               ++ +     F  V  R     +     +       A +HG +S   ++ VM SF+ 
Sbjct: 231 QALKRLADANPDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRA 290

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRG 586
              ++L+AT V   GIDV D + +I     H+ L       +   GR GR 
Sbjct: 291 RQIQMLVATDVAARGIDVDDITHVI-----HYQLPDEIETYNHRSGRTGRA 336


>gi|311110405|ref|ZP_07711802.1| competence protein F [Lactobacillus gasseri MV-22]
 gi|311065559|gb|EFQ45899.1| competence protein F [Lactobacillus gasseri MV-22]
          Length = 395

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 149/363 (41%), Gaps = 52/363 (14%)

Query: 256 NVEGKIAQKILRNIPF--SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           NVE     KIL  + +  + T+ QE   ++++   S K R   ++    G+GKT +    
Sbjct: 42  NVENGNYPKILTPLSWRETLTEQQELISRELVN--SFKERRNHLIHAVTGAGKTEMLFKV 99

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A++ G +  I  P   +  + +   +   +N +I          + H R+  E    
Sbjct: 100 VEEALKGGFRIAIATPRIDVVDELFPRFQAAFENVKI---------GKYHGREHHE--VR 148

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV------LLMT 427
            +  +I  TH L +    Y    L+++DE   F   +  K+   A    V        +T
Sbjct: 149 DEQFVICTTHQLLK---FYQAFDLIVIDEVDSFPFYEN-KMLHFAAENAVKKVGCTFFLT 204

Query: 428 ATPIPRTLVLTSLGDIDISKITEK--------PAGRKPIKTVIIPINRID-EVIERLKVV 478
           ATP  + L       I+ S +  +        P  +   K+ I    ++   +I+++K +
Sbjct: 205 ATPDSKLLRQAKNKTINYSLLKRRFHQGLLPVPKEKYFFKSYISNKGKVHPTLIKQIKKI 264

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI----AIIHGRMSDIDKESVM 534
           L   K      P+I+E              S +E + SSI     I+     D D+++ +
Sbjct: 265 LDMKKPLLIFVPRIKEL-------------STYEKYLSSIFKTSKIVSVYAGDKDRQAKV 311

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH-FGLAQLHQLRGRVGRGEEISSCI 593
            SF+     +L+ TT++E G+      +I+I   +  +    L Q+ GRVGR  +    +
Sbjct: 312 ASFRRRETDILLTTTILERGVTFKHVQVIVIAADDPIYNTPSLVQIAGRVGRSADDRDGL 371

Query: 594 LLY 596
           +L+
Sbjct: 372 VLF 374


>gi|304404141|ref|ZP_07385803.1| primosomal protein N' [Paenibacillus curdlanolyticus YK9]
 gi|304347119|gb|EFM12951.1| primosomal protein N' [Paenibacillus curdlanolyticus YK9]
          Length = 842

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 9/174 (5%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
           R  P   T+ Q+  +K I+  +  +     +L G  GSGKT V L A+   ++ G QA++
Sbjct: 274 RTEPLPLTEGQQEVLKWIVASIDAREPKPYLLHGVTGSGKTEVYLQAIQRCLDQGLQAIV 333

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-AL 385
           + P   L  Q  E  K    +    V ++   +    R     +I   +A + +G   A+
Sbjct: 334 LVPEISLTPQMVERFKGRFGDA---VAVLHSRLSTGERYDEWRKIRERRAQVAVGARSAI 390

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           F     +  + L+I+DE+H    +Q  + + K  A  V +M A     T+VL S
Sbjct: 391 FA---PFESIGLMIIDEEHESSYKQ--EESPKYHARDVAIMRAKQHGATVVLGS 439


>gi|296391897|ref|ZP_06881372.1| primosome assembly protein PriA [Pseudomonas aeruginosa PAb1]
          Length = 739

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 21/178 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   + AG QA+++ P I +  Q    F +++     ++   +
Sbjct: 225 LLAGVTGSGKTEVYLQLIRETLAAGRQALVLIPEINLGPQTLARFERRFNARIALLHSAL 284

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           T       R  A      G+A I+IGT  ALF       +  L+IVDE+H    +Q+  L
Sbjct: 285 TDR----ERLDAWLAARDGEADIVIGTRSALF---TPLKRPGLIIVDEEHDASYKQQDGL 337

Query: 415 TQKA-----------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              A             P +LL +ATP   +L     G   + ++T++  G  P K +
Sbjct: 338 RYHARDLALVRARLENVP-ILLGSATPALESLHNAQAGRYGLLRLTQRAGGAHPPKFI 394


>gi|254413664|ref|ZP_05027434.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes
           PCC 7420]
 gi|196179771|gb|EDX74765.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes
           PCC 7420]
          Length = 464

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 143/352 (40%), Gaps = 53/352 (15%)

Query: 272 SPTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVI 326
           +PT+ Q  AI ++L  +D+        + Q   G+GKT    + M   ++    G QA+I
Sbjct: 25  TPTEIQSQAIPELLAGRDV--------VAQSQTGTGKTAAFSLPMLEQIDPNARGVQALI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +AP   LA+Q  + I+  T N ++ +  + G      + + L+R     A +++GT    
Sbjct: 77  LAPTRELARQVADAIRDLTSNRRVGIVTVYGGQSIDRQIRLLQR----NAQMVVGTPGRV 132

Query: 387 QDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRT 434
            D +    L L     V++DE            V++ LK   K         T     R 
Sbjct: 133 IDLLDRGDLKLDQVKWVVLDEADEMLSMGFIDDVKKILKQAPKERQTACFSATMPKAIRD 192

Query: 435 LVLTSLGDIDISKITEKPAGRKPIK-TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           LV   L              + P+  TV +P      + +R+ ++     K+  + P + 
Sbjct: 193 LVNQFL--------------KSPVTVTVELPKATPARIEQRVYMIPRGCSKSKALQPILA 238

Query: 494 -EKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            E  E+        RS  E   S  +    S+   HG +S   +E ++  F+    + ++
Sbjct: 239 LEDPEAALIFVRTRRSAAE-LTSQLQAAGHSVDEYHGDLSQSQRERLLSRFRQSQVRWVV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   G+DV   + +I  +      + +H++ GR GR  +  + I L  P
Sbjct: 298 ATDIAARGLDVDHLTHVINYDLPDQVESYIHRI-GRTGRAGKTGTAISLIQP 348


>gi|254387115|ref|ZP_05002388.1| DEAD-box RNA helicase [Streptomyces sp. Mg1]
 gi|194345933|gb|EDX26899.1| DEAD-box RNA helicase [Streptomyces sp. Mg1]
          Length = 524

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 131/328 (39%), Gaps = 33/328 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  +   A+++ P   LAQQ  + +  Y  +  + +
Sbjct: 56  RGRTGSGKTLAFGLALLARTAGHRAQPKQPLALVLVPTRELAQQVTDALAPYATSVNLRI 115

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRFG 407
             + G M    +  AL R     A +++ T    +D I        ++ + ++DE     
Sbjct: 116 ATVVGGMSINRQSGALRR----GAEVLVATPGRLKDLIDRGDADLSQVAITVLDEAD--- 168

Query: 408 VQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                ++T     P V  LL    P  +T++ ++  D +I K+  K     P+   + P 
Sbjct: 169 -----QMTDMGFMPQVTALLKQVRPEGQTMLFSATLDKNIDKLV-KMFLHDPVGHSVDPS 222

Query: 466 NRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAI 520
                 +E   L V+    KKA        + +   F       + + +   +     + 
Sbjct: 223 AGAVTTMEHHVLYVMDETDKKAVATRIAARDGRVIMFVDTKRGVDRMVKKLLADGVRASG 282

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG  S   +   +D FK G    L+AT V   GI + D  +++  +        LH+  
Sbjct: 283 LHGGRSQPQRNRTLDWFKTGEVTALVATNVAARGIHIDDLDLVVNVDPPTDHKDYLHR-G 341

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRL 608
           GR  R  E  S + L  P   +   TRL
Sbjct: 342 GRTARAGESGSVVTLVLPD-QRREMTRL 368


>gi|157156397|ref|YP_001462652.1| ATP-dependent RNA helicase DbpA [Escherichia coli E24377A]
 gi|193062707|ref|ZP_03043801.1| ATP-independent RNA helicase DbpA [Escherichia coli E22]
 gi|194426050|ref|ZP_03058606.1| ATP-independent RNA helicase DbpA [Escherichia coli B171]
 gi|260843691|ref|YP_003221469.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O103:H2 str. 12009]
 gi|260855042|ref|YP_003228933.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O26:H11 str. 11368]
 gi|260867791|ref|YP_003234193.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O111:H- str. 11128]
 gi|300822487|ref|ZP_07102626.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300904996|ref|ZP_07122814.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|301305840|ref|ZP_07211925.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|331667742|ref|ZP_08368606.1| ATP-independent RNA helicase DbpA [Escherichia coli TA271]
 gi|331677132|ref|ZP_08377828.1| ATP-independent RNA helicase DbpA [Escherichia coli H591]
 gi|157078427|gb|ABV18135.1| ATP-independent RNA helicase DbpA [Escherichia coli E24377A]
 gi|192931829|gb|EDV84429.1| ATP-independent RNA helicase DbpA [Escherichia coli E22]
 gi|194416105|gb|EDX32371.1| ATP-independent RNA helicase DbpA [Escherichia coli B171]
 gi|257753691|dbj|BAI25193.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O26:H11 str. 11368]
 gi|257758838|dbj|BAI30335.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O103:H2 str. 12009]
 gi|257764147|dbj|BAI35642.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O111:H- str. 11128]
 gi|300403145|gb|EFJ86683.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300524903|gb|EFK45972.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300838930|gb|EFK66690.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|315254386|gb|EFU34354.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
 gi|323153565|gb|EFZ39816.1| ATP-independent RNA helicase dbpA [Escherichia coli EPECa14]
 gi|323162444|gb|EFZ48296.1| ATP-independent RNA helicase dbpA [Escherichia coli E128010]
 gi|323179693|gb|EFZ65254.1| ATP-independent RNA helicase dbpA [Escherichia coli 1180]
 gi|324117462|gb|EGC11368.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|331065327|gb|EGI37222.1| ATP-independent RNA helicase DbpA [Escherichia coli TA271]
 gi|331075821|gb|EGI47119.1| ATP-independent RNA helicase DbpA [Escherichia coli H591]
          Length = 457

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|145635138|ref|ZP_01790843.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|145267559|gb|EDK07558.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
          Length = 613

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 143/356 (40%), Gaps = 61/356 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           +P+  Q+S I  +L      N +L + Q   GSGKT    + L+A     E   Q ++MA
Sbjct: 27  TPSPIQQSCIPHLLN----GNDVLGMAQ--TGSGKTAAFALPLLAQIDPSEKHPQMLVMA 80

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q     E   KY Q T+I+   + G      + +AL++     A +++GT   
Sbjct: 81  PTRELAIQVADACELFVKYAQGTRIVT--LYGGQRYDIQLRALKQ----GAQVVVGTPGR 134

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP---HVLLMTAT-PIP- 432
             D I+   L        +L   DE  R G    ++ T  A  P      L +AT P P 
Sbjct: 135 ILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVE-TVMAELPENHQTALFSATMPEPI 193

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL--------KVVLSEG 482
           R +    + D    KI         I      ++  R +E + R          ++ +  
Sbjct: 194 RRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIFART 253

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           K       ++ EK  + FRS                A ++G M+   +E  +D  +NG+ 
Sbjct: 254 KTGTLDITELLEK--NGFRS----------------AALNGDMTQQLREQTLDRLRNGSL 295

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +++AT V   GID+   S+++  +      + +H++ GR GR       +L   P
Sbjct: 296 DIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEP 350


>gi|107104150|ref|ZP_01368068.1| hypothetical protein PaerPA_01005223 [Pseudomonas aeruginosa PACS2]
 gi|218894149|ref|YP_002443018.1| primosome assembly protein PriA [Pseudomonas aeruginosa LESB58]
 gi|218774377|emb|CAW30194.1| primosomal protein N' [Pseudomonas aeruginosa LESB58]
          Length = 739

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 21/178 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   + AG QA+++ P I +  Q    F +++     ++   +
Sbjct: 225 LLAGVTGSGKTEVYLQLIRETLAAGRQALVLIPEINLGPQTLARFERRFNARIALLHSAL 284

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           T       R  A      G+A I+IGT  ALF       +  L+IVDE+H    +Q+  L
Sbjct: 285 TDR----ERLDAWLAARDGEADIVIGTRSALF---TPLKRPGLIIVDEEHDASYKQQDGL 337

Query: 415 TQKA-----------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              A             P +LL +ATP   +L     G   + ++T++  G  P K +
Sbjct: 338 RYHARDLALVRARLENVP-ILLGSATPALESLHNAQAGRYGLLRLTQRAGGAHPPKFI 394


>gi|1661175|gb|AAB41189.1| transcription repair coupling factor [Streptococcus mutans]
          Length = 72

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%)

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P+ R P++T ++  N
Sbjct: 1   GVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPSNRYPVQTYVMETN 60


>gi|15599145|ref|NP_252639.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|218889767|ref|YP_002438631.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|9950138|gb|AAG07337.1|AE004813_4 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|218769990|emb|CAW25752.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 449

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 137/350 (39%), Gaps = 51/350 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT-------LVALIAMAAAVEAGG-Q 323
           +PT  Q  AI   L     K R L +     G+GKT       L  L      V A   +
Sbjct: 23  TPTPIQAQAIPPAL-----KGRDL-LAAAQTGTGKTAGFALPLLQRLTLEGPQVAANSVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHII 379
           A+++ P   LA+Q +  ++ Y Q+  +   +  G +   PQ  + RK ++        I+
Sbjct: 77  ALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVD--------IL 128

Query: 380 IGTHALF-----QDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAPHVLLMTATPI 431
           + T         Q+++++ +L  +++DE  R    G  + L            L  A P 
Sbjct: 129 VATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDE----------LFAALPR 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  +   +   R P+   + P N   + + +  V + + +KA   C  
Sbjct: 179 KRQTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHL 238

Query: 492 IEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++  +       +  R  VE    L +    +   IHG      +   +  FK G   LL
Sbjct: 239 LQANRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +AT V   G+D+ +  +++  +        +H++ GR GR       + L
Sbjct: 299 VATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRI-GRTGRAGASGQAVSL 347


>gi|42522912|ref|NP_968292.1| ATP-dependent RNA helicase DbpA [Bdellovibrio bacteriovorus HD100]
 gi|39574108|emb|CAE79285.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 505

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + ER N L     ++   +HG M   +++ VM  F+NG+ ++L+AT V   G+D+ +  +
Sbjct: 300 IAERLNDLG----AASGCLHGDMEQRERDRVMAMFRNGSHRILVATDVAARGLDIDNLEL 355

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +I  +        +H++ GR GR  +    + + HP
Sbjct: 356 VINFDLPLSPEIYVHRI-GRTGRAGKTGVAVTIAHP 390


>gi|330980576|gb|EGH78679.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 373

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 119/276 (43%), Gaps = 35/276 (12%)

Query: 386 FQDSIQYYKLILVIVDEQH---RFGVQQR---LKL---TQKATAPHVLLMTATPIPRTLV 436
           F++ I    + L++VDE H    +G   R   LKL    ++   P  LL+TAT  P+ ++
Sbjct: 119 FRNFIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQREFNIPQTLLLTATATPQVII 178

Query: 437 -LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +     I    +      R  +   + P++  D+   RL   L+E +    I     +K
Sbjct: 179 DMQDKFAIAPEDVITTGFYRANLHLWVKPVSGRDKR-RRLVEWLNERRGQPTIVYVTLQK 237

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              +  + +E+ N L        +  H  + +  +ES+   F  G    ++AT    +GI
Sbjct: 238 TAEHIAAHLEQ-NGL------PASAYHAGLPNDQRESIQKQFMGGRLNCIVATIAFGMGI 290

Query: 556 DVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           D  D     I N  HF L +      Q  GR GR    S C++L     +++S   L+VL
Sbjct: 291 DKSD-----IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVL----ANRDS---LNVL 338

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           +N   G  +  E + +  E ++LG +  G  +FL+ 
Sbjct: 339 ENFVYGDTLEREGIARVLE-DLLGARHDGQWEFLLG 373


>gi|322496407|emb|CBZ31477.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 678

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID--VVDASIIIIENAEHFGLAQLH 577
            +HG M    +ES M SF++    +LIAT V   G+D  +VD   ++I+ A    +    
Sbjct: 368 CLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVD---LVIQCAPPSDIDAFI 424

Query: 578 QLRGRVGRGEEISSCILLYHP 598
              GR GR      C+LLY P
Sbjct: 425 HRAGRTGRAGRKGVCVLLYQP 445


>gi|229825333|ref|ZP_04451402.1| hypothetical protein GCWU000182_00687 [Abiotrophia defectiva ATCC
           49176]
 gi|229790705|gb|EEP26819.1| hypothetical protein GCWU000182_00687 [Abiotrophia defectiva ATCC
           49176]
          Length = 386

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 134/339 (39%), Gaps = 42/339 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM---AAAVEAGGQAVIMA 328
           SPT  QE+A K IL+  S        +Q   GSGKTL  L+ +       E   + VI+A
Sbjct: 23  SPTPVQEAAYKKILEGGSF------FVQAPTGSGKTLAYLLPLFEKYKKTERENKIVIVA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           P   LA Q +   +    NT I +  +   GN     + + L++    +  II+GT    
Sbjct: 77  PTTELALQIHRQAELVRGNTGIGLHSVCLGGNASIIRQIENLKK----KPQIIVGTPGRI 132

Query: 387 QDSIQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAPHV-----LLMTATPIPRTLV 436
            D I+  K+       +++DE  R   +   + T       V     LL +AT     L 
Sbjct: 133 TDLIRKRKIAAHLVRTLVLDEGDRLFDKNNKETTDALIKCFVRDRQLLLFSATATDSALE 192

Query: 437 LTSLGDIDISKI-----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
                D DI++I      E PA  K    V    N+++  I R        +KA      
Sbjct: 193 GARAWDKDITEIIADGGKEIPANIKHWYVVCEKRNKLE--ILRGTTGAIRTRKAIIFVNG 250

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           I + +E+ ++ +       H H+   +  I G  +  +++  M  F +   K LIAT + 
Sbjct: 251 IYDIEET-YKKLA------HHHY--QVDFIGGERTKEERKKAMQGFLHKKIKYLIATDIA 301

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             G+   D   +   N        LH+  GR GR   + 
Sbjct: 302 ARGLQFDDVDTVFHVNLPENADTYLHRA-GRTGRAGRVG 339


>gi|239631987|ref|ZP_04675018.1| primosomal protein N' [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526452|gb|EEQ65453.1| primosomal protein N' [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 805

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 19/179 (10%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q + + +P +P   Q++ +  I   +++++    +L+G  GSGKT V L  +A  + AG 
Sbjct: 261 QPLTKPLPLTP--EQQTIVTQINAAVAERDPKTFLLEGVTGSGKTEVYLQVIARVLAAGQ 318

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   L  Q    + +        V ++   +    +     RIA G+A +++G 
Sbjct: 319 TALMLVPEIALTPQ---MVNRVKGRFGTHVAVMHSGLSDGEKYDEWRRIARGEAQVVVGA 375

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATP 430
            +     ++   + + I+DE+H    +Q            LK  Q   AP V+L +ATP
Sbjct: 376 RSAAFAPLK--NIGVFIMDEEHETSYKQDSAPRYYARDVLLKRAQIHHAP-VVLGSATP 431


>gi|254413079|ref|ZP_05026851.1| ATP-dependent DNA helicase RecQ [Microcoleus chthonoplastes PCC
           7420]
 gi|196180243|gb|EDX75235.1| ATP-dependent DNA helicase RecQ [Microcoleus chthonoplastes PCC
           7420]
          Length = 731

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 10/102 (9%)

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           RSV E    L +   S++   H  MSDID+ S  + F     ++++AT    +GI+ +D 
Sbjct: 267 RSVDEVAFRLQKDGISALPY-HAGMSDIDRSSNQNRFIRDDVQVIVATIAFGMGINKLDV 325

Query: 561 SIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHP 598
             +I     H+ L +     +Q  GR GR  E + C + Y P
Sbjct: 326 RFVI-----HYDLPRNLEGYYQESGRAGRDGEPAYCTIFYRP 362


>gi|154332025|ref|XP_001561829.1| nucleolar RNA helicase II [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134059150|emb|CAM36848.1| putative nucleolar RNA helicase II [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 689

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID--VVDASIIIIENAEHFGLAQLH 577
            +HG M    +ES M SF++    +LIAT V   G+D  +VD   ++I+ A    +    
Sbjct: 368 CLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVD---LVIQCAPPSDIDAFI 424

Query: 578 QLRGRVGRGEEISSCILLYHP 598
              GR GR      C+LLY P
Sbjct: 425 HRAGRTGRAGRKGVCVLLYQP 445


>gi|15600243|ref|NP_253737.1| primosome assembly protein PriA [Pseudomonas aeruginosa PAO1]
 gi|313110088|ref|ZP_07795990.1| primosomal protein N' [Pseudomonas aeruginosa 39016]
 gi|9951341|gb|AAG08435.1|AE004918_5 primosomal protein N' [Pseudomonas aeruginosa PAO1]
 gi|310882492|gb|EFQ41086.1| primosomal protein N' [Pseudomonas aeruginosa 39016]
          Length = 739

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 21/178 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   + AG QA+++ P I +  Q    F +++     ++   +
Sbjct: 225 LLAGVTGSGKTEVYLQLIRETLAAGRQALVLIPEINLGPQTLARFERRFNARIALLHSAL 284

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           T       R  A      G+A I+IGT  ALF       +  L+IVDE+H    +Q+  L
Sbjct: 285 TDR----ERLDAWLAARDGEADIVIGTRSALF---TPLKRPGLIIVDEEHDASYKQQDGL 337

Query: 415 TQKA-----------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              A             P +LL +ATP   +L     G   + ++T++  G  P K +
Sbjct: 338 RYHARDLALVRARLENVP-ILLGSATPALESLHNAQAGRYGLLRLTQRAGGAHPPKFI 394


>gi|73662111|ref|YP_300892.1| ATP-dependent RNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123643052|sp|Q49Z29|Y802_STAS1 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SSP0802
 gi|72494626|dbj|BAE17947.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 506

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 128/327 (39%), Gaps = 52/327 (15%)

Query: 299 QGDVGSGKTLVALIAM--AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           Q   G+GKT    I +    A + G Q++I+AP   LA Q  E +K + +   I V  + 
Sbjct: 45  QAQTGTGKTGAFGIPLIEKVADQEGVQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVF 104

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGV 408
           G MP   + KAL++       I++GT     D +          + LIL   DE    G 
Sbjct: 105 GGMPIDRQIKALKK----GPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGF 160

Query: 409 QQRLKLTQK---ATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVI 462
              +K       A     +L +AT +P+   TLV   +              + P+    
Sbjct: 161 IDDMKFIMDKIPAEQRQTMLFSAT-MPKAIQTLVQQFM--------------KSPVIVKT 205

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI---- 518
           +     D  IE    ++ E +K +       +  +     V  R     +  TS++    
Sbjct: 206 MNNEMSDPQIEEYYTIVKELEK-FDTFTSFLDVHQPELAIVFGRTKRRVDELTSALISKG 264

Query: 519 ---AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHF 571
                +HG ++   +  V+  FKN    +L+AT V   G+D+   S +    I ++ E +
Sbjct: 265 YKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVAARGLDISGVSHVYNFDIPQDTESY 324

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHP 598
                H++ GR GR  +    I   +P
Sbjct: 325 ----THRI-GRTGRAGKKGVAITFVNP 346


>gi|254238243|ref|ZP_04931566.1| primosomal protein N' [Pseudomonas aeruginosa C3719]
 gi|126170174|gb|EAZ55685.1| primosomal protein N' [Pseudomonas aeruginosa C3719]
          Length = 739

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 21/178 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   + AG QA+++ P I +  Q    F +++     ++   +
Sbjct: 225 LLAGVTGSGKTEVYLQLIRETLAAGRQALVLIPEINLGPQTLARFERRFNARIALLHSAL 284

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           T       R  A      G+A I+IGT  ALF       +  L+IVDE+H    +Q+  L
Sbjct: 285 TDR----ERLDAWLAARDGEADIVIGTRSALF---TPLKRPGLIIVDEEHDASYKQQDGL 337

Query: 415 TQKA-----------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              A             P +LL +ATP   +L     G   + ++T++  G  P K +
Sbjct: 338 RYHARDLALVRARLENVP-ILLGSATPALESLHNAQAGRYGLLRLTQRAGGAHPPKFI 394


>gi|260467467|ref|ZP_05813636.1| excinuclease ABC, B subunit [Mesorhizobium opportunistum WSM2075]
 gi|259028749|gb|EEW30056.1| excinuclease ABC, B subunit [Mesorhizobium opportunistum WSM2075]
          Length = 1056

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 8/92 (8%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P   EG IA K++ +  F P   Q +AIKD+++ +   +R  ++L G  GSGKT      
Sbjct: 174 PEKSEGGIAIKMVSD--FEPAGDQPTAIKDLVEGVENNDRT-QVLLGVTGSGKTFT---- 226

Query: 314 MAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKY 344
           MA  +E   + A+I+AP   LA Q Y   KK+
Sbjct: 227 MAKVIEETQRPALILAPNKTLAAQLYSEFKKF 258


>gi|225011737|ref|ZP_03702175.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
 gi|225004240|gb|EEG42212.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
          Length = 553

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 157/372 (42%), Gaps = 66/372 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +PT+ Q+  I  +L+   Q   ++ + Q   G+GKT      M   ++A     Q +I+A
Sbjct: 24  TPTEVQDKVIPILLE---QNTDLVALAQ--TGTGKTAAFGFPMLQRIDAKQRTTQGLILA 78

Query: 329 PIGILAQQHYEFIKKYTQNTQII--VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           P   L  Q    +  Y Q  + I  V I  G    A+ ++   +I  G A I++ T    
Sbjct: 79  PTRELCLQITNEMGIYGQALKNINIVAIYGG----ANIQEQANKIRRG-AQIVVATPGRL 133

Query: 387 QD----------SIQYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRT 434
           +D          +IQY   +L   DE    G  + +K  LT    + +  L +AT  P  
Sbjct: 134 KDMIGRRLVDISAIQY--CVLDEADEMLNMGFYEDIKDILTHTPKSKNSWLFSATMPPEV 191

Query: 435 LVLTSL---GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--C 489
             +        I+I+  T+  + +       I   R  E    L+ V+S     + +  C
Sbjct: 192 NTIAKKFMKKPIEITVGTKNSSAKNIDHQYFIVAAR--ERYNALRAVVSMNTDLFGVVFC 249

Query: 490 -PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +IE +K      V E+   + + + +  A IHG +S   ++ VM SF+    +LLIAT
Sbjct: 250 RTKIETQK------VAEKL--IQDGYKA--AAIHGDLSQNQRDIVMQSFRKKRIQLLIAT 299

Query: 549 TVIEVGIDVVDASIII-------IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            V   GIDV D + +I       IE   H          GR GR  ++ + I+     ++
Sbjct: 300 DVAARGIDVDDLTHVINYQLPDEIETYTHRS--------GRTGRAGKLGTSIIF----VT 347

Query: 602 KNSYTRLSVLKN 613
           K+   ++ +++N
Sbjct: 348 KSDRRKIKLIEN 359


>gi|297619461|ref|YP_003707566.1| ERCC4 domain-containing protein [Methanococcus voltae A3]
 gi|297378438|gb|ADI36593.1| ERCC4 domain protein [Methanococcus voltae A3]
          Length = 822

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 33/199 (16%)

Query: 302 VGSGKTLVALIAMAAAV-EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G GKT +A + +A  + + GG+A+I+AP   L +QH+E +KK+    +  + I+ G + 
Sbjct: 50  TGLGKTAIATLTIAGILHKKGGKALIIAPSRPLVEQHFESLKKFLNVPEDEILILNGKVQ 109

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRFGVQQRLKLT 415
              R++  E        I I T  + ++ I   +L      +++ DE H           
Sbjct: 110 PLKRQELWE-----NGRIFISTPQVVENDIIATRLNPNDFSILVADEAHHSTGNHSYTFV 164

Query: 416 QKA--TAPHVLLMTATP---IPRTL-VLTSLG----------DIDISKITEKPAGRKPIK 459
                   HVL +TA+P   I R L V  +LG          D+D+ +   K A  KP K
Sbjct: 165 GNVFREKTHVLGLTASPGSNIERILEVCENLGIEHVEIRTEDDLDVKQYIAK-AKLKP-K 222

Query: 460 TVIIPINRIDEVIERLKVV 478
            V +P    DE  E LK++
Sbjct: 223 RVDLP----DEYTEALKLL 237


>gi|21228019|ref|NP_633941.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
 gi|20906449|gb|AAM31613.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
          Length = 964

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 151/370 (40%), Gaps = 65/370 (17%)

Query: 263 QKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--- 318
           Q  L  + F  PT+ QE A   I+           +L    GSGKT  A++ +  ++   
Sbjct: 15  QGALNTLGFKKPTEPQERAFPHIMDGKHT------LLIAPTGSGKTESAVLPVFHSILKK 68

Query: 319 --EA--GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             EA  G  A+ + P+  L +     I+   Q   I V++  G+ PQ+ R    +R +  
Sbjct: 69  KPEARRGISALYITPLRALNRDMLSRIENLGQMLDIKVQVRHGDTPQSER----QRQSRN 124

Query: 375 QAHIIIGT----HALFQDSIQYYKL---ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
              ++I T     A+F  S     L     V++DE H     +R    Q A     L+  
Sbjct: 125 PPDVLITTPETLQAMFTGSRLRQNLETVTHVVIDEIHELAGSKRG--AQLAVGLERLVEI 182

Query: 428 ATPIPRTLVLTSLGD-IDISKITEKPAGRKPIKTVII----------------------- 463
           +    R  +  ++G+  +I+K     AG     TVI                        
Sbjct: 183 SGEFQRIGLSATVGNPWEIAKFL---AGANRDFTVIEVALLKLLEFDVVSPHLSISGTAE 239

Query: 464 PINRIDEVIERLKVVLSEGKKA-YWIC-PQIEEKKES-----NFRSVVERFNSLHEHFTS 516
            ++R  EV+E  + V  E + A + +C  +I EK +S     N R   E   +      +
Sbjct: 240 EVDREKEVMEIARTVGCEPEFASHLLCIKKIVEKSQSTLIFVNTRQSAEALAAGFRKLGA 299

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           SI + HG +S   +    + FK G  + LI T+ +E+GID+ +   ++    ++    Q+
Sbjct: 300 SIGVHHGSLSFEARVEAEEEFKAGALRGLICTSSMELGIDIGNVDRVV----QYGSPRQV 355

Query: 577 HQLRGRVGRG 586
            +L  RVGR 
Sbjct: 356 SRLLQRVGRA 365


>gi|47221681|emb|CAG10153.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 359

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 131/307 (42%), Gaps = 45/307 (14%)

Query: 303 GSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           G+GKT   +I++   +       QA+I+AP   LA Q  + +        +      G  
Sbjct: 33  GTGKTATYVISVLQRINVMKKETQAIILAPTRELAYQIQKVVLSLGDYMGVRCHACIGG- 91

Query: 360 PQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQ-----HRFGVQ 409
              +  + +E +     HI++GT       L + ++    + ++++DE      H F  Q
Sbjct: 92  --TNIHEDIENLKSTNPHIMVGTPGHVFDMLGRRAVSSKAIRMLVLDEADQMLGHGFKDQ 149

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
                 +  T    +L++AT  P  L +T            K   + P+  ++       
Sbjct: 150 IHEIFCKLPTNIQAILLSATMPPDVLEVT------------KRFMQNPVNILVKKEELTV 197

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAIIHG 523
           E I++  +  +E KK   +C   E    +    F +   +   L +  TS   +++++H 
Sbjct: 198 EGIQQFYITETEEKKLKSLCRLYETLTITQAVIFVNTRRKAEWLTQELTSKDFTVSVLHS 257

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQ 578
            M   ++++ M  F++G+ ++ I T ++  GI+V  AS++I     +F L+      +H+
Sbjct: 258 EMGQSERDTTMKEFRSGSSRVFITTDLLARGINVQHASLVI-----NFDLSTSLENYIHR 312

Query: 579 LRGRVGR 585
           + GR GR
Sbjct: 313 I-GRSGR 318


>gi|332662156|ref|YP_004444944.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332330970|gb|AEE48071.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 380

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 146/352 (41%), Gaps = 58/352 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGG---Q 323
           PT  Q+ AI  +L+    +  +L   Q   G+GKT      ++ L+     +  G    +
Sbjct: 24  PTPIQQKAIPVLLE----RKDLLGCAQ--TGTGKTAAFAIPILQLLYQDKGLSKGPRQLK 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  E    Y +N  +   +I G + Q+ + +A+     G   I++ T 
Sbjct: 78  ALILTPTRELAIQISESFGAYGRNCGLKHAVIFGGVNQSKQVEAI----RGGLDILVATP 133

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPR 433
               D +    L L      ++DE  R    G    +K  +T+       L  +AT  P 
Sbjct: 134 GRLLDLMNQQLLSLQHINTFVLDEADRMLDMGFVHDVKRIITRLPQRRQSLFFSATMPPE 193

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
              +  L +  +S          P+K  + PI+   E++E++   + +  K   +   I+
Sbjct: 194 ---IQKLANTILSN---------PVKVEVSPISSTTEMVEQMVYFVEKRDKRNLL---IQ 238

Query: 494 EKKESNFRS--VVERFNSLHEHFTSSIA-------IIHGRMSDIDKESVMDSFKNGTCKL 544
             +  N +S  V  R     +     I         IHG  S   ++S ++ FK G  ++
Sbjct: 239 LLRSPNVKSALVFTRTKHGADKINRDIVKAGIRSNAIHGNKSQNARQSALNGFKEGKLRV 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           L+AT +   GIDV + S +I  +  +     +H++ GR GR    G  +S C
Sbjct: 299 LVATDIAARGIDVDNLSHVINYDLPNIPETYVHRI-GRTGRAGASGIALSFC 349


>gi|323348660|gb|EGA82903.1| Dbp3p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 290

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 130/294 (44%), Gaps = 30/294 (10%)

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q ++++P   LA Q Y+ +   T    +    + G +P+  +R  L++     + +++
Sbjct: 8   GIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKK-----SQVVV 62

Query: 381 GTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLK---LTQKATAPHVLLMTAT 429
            T     D     S+   ++  +++DE  R    G ++ +K       A+    L+ TAT
Sbjct: 63  ATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTAT 122

Query: 430 --PIPRTLVLTSLGD---IDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEG 482
                R L  T + +   + I    +  A ++   I  V+ P  +  +++E LK   S  
Sbjct: 123 WPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGP 182

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           KK   +      KKE+   + VER N  +  +  ++A IHG +S   +   ++ FK+G  
Sbjct: 183 KKNEKVLIFALYKKEA---ARVER-NLKYNGY--NVAAIHGDLSQQQRTQALNEFKSGKS 236

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            LL+AT V   G+D+ +   +I           +H++ GR GR  +  +   L+
Sbjct: 237 NLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRI-GRTGRAGQTGTAHTLF 289


>gi|321459317|gb|EFX70372.1| hypothetical protein DAPPUDRAFT_328137 [Daphnia pulex]
          Length = 738

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 94/478 (19%), Positives = 182/478 (38%), Gaps = 113/478 (23%)

Query: 163 PTGLSVDLFKKIIVEALSRLPVLP--EWIEKDLL---QKKSFPSIAEAFNIIHNPR--KA 215
           P   + D    +I     + P  P  +W+  D     Q++S  + +       N R  ++
Sbjct: 113 PPQWNADAPPPVIQNERWQEPPPPAGQWVANDRWKEPQRRSATTDSRGGGYGGNARWKES 172

Query: 216 KDFEWTS--PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG-------------K 260
            + +WT+     +RL  +    G   +      F K   IP+   G             K
Sbjct: 173 SESDWTTLTAKDDRLELEMFGTGNSGI-----NFDKYEDIPVEATGNDVPAHINTFEDVK 227

Query: 261 IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           + + I  NI  +    PT  Q+ AI  IL     +  ++   Q   GSGKT   L+ +  
Sbjct: 228 LTEIIRSNIALTRYDKPTPVQKYAIPIILA----RRDVMACAQ--TGSGKTAAFLVPILN 281

Query: 317 AV--------EAGGQ-----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            +        ++ GQ           A+++AP   LA Q Y+  KK+   +++   ++ G
Sbjct: 282 QLFERGPVVNQSAGQRSYGRRKQYPLALVLAPTRELATQIYDEAKKFAYRSRVRPCVVYG 341

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ 409
                 + + LER      H+++ T     D ++  K+ L     +++DE  R    G +
Sbjct: 342 GADVRQQMQDLER----GCHLLVATPGRLVDMLERGKIGLEHCNFLVLDEADRMLDMGFE 397

Query: 410 QRLK-LTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            +++ + ++ T P       L+ +AT  P+ + + +   ++                + +
Sbjct: 398 PQIRRIVEQDTMPKTGDRQTLMFSAT-FPKEIQMLARDFLE--------------NYIFL 442

Query: 464 PINRIDEVIERLK---VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT----- 515
            + R+    E +    V + E  K  ++   +     + F S VE  ++ HE  T     
Sbjct: 443 AVGRVGSTSENITQKIVWVEEHDKRSFLLDLLNASGLNKFNSQVETESTEHEQLTLVFVE 502

Query: 516 ----------------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                             +  IHG  S  ++E  +  F++G   +L+AT V   G+D+
Sbjct: 503 TKRGADALEEFLYRDGYPVTSIHGDRSQREREDALKRFRSGKTPILVATAVAARGLDI 560


>gi|321398908|emb|CAM65330.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
          Length = 678

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID--VVDASIIIIENAEHFGLAQLH 577
            +HG M    +ES M SF++    +LIAT V   G+D  +VD   ++I+ A    +    
Sbjct: 368 CLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVD---LVIQCAPPSDIDAFI 424

Query: 578 QLRGRVGRGEEISSCILLYHP 598
              GR GR      C+LLY P
Sbjct: 425 HRAGRTGRAGRKGVCVLLYQP 445


>gi|313214693|emb|CBY40985.1| unnamed protein product [Oikopleura dioica]
          Length = 596

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 9/80 (11%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG----LAQLH 577
           H  +S  D+ES+ + F  G  K+++AT    +GID  D   +I     H+G    L   +
Sbjct: 345 HAGLSTDDRESIQNEFLRGQTKVIVATIAFGMGIDKADVRRVI-----HYGIPSSLEAYY 399

Query: 578 QLRGRVGRGEEISSCILLYH 597
           Q  GR GR  + S CI+ ++
Sbjct: 400 QEIGRAGRDGKSSDCIVFFN 419


>gi|300721292|ref|YP_003710563.1| primosomal protein N' [Xenorhabdus nematophila ATCC 19061]
 gi|297627780|emb|CBJ88311.1| primosomal protein N' (factor Y) directs replication fork assembly
           at D-loops, ATP-dependent [Xenorhabdus nematophila ATCC
           19061]
          Length = 732

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 19/151 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           ++ G  GSGKT V L  +   +  G QA+I+ P IG+  Q     I+++ +  +  ++++
Sbjct: 221 LIAGITGSGKTEVYLSVLENILAQGKQALILVPEIGLTPQT----IRRFRERFKAPIDVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
              +  + R  A  R   G+  I+IGT  ALF     + +L ++I+DE+H          
Sbjct: 277 HSALNDSERLAAWLRAKRGENAIVIGTRSALF---TPFARLGMIIIDEEHDGSYKQQEGW 333

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           R+  +       K     +++ TATP   TL
Sbjct: 334 RYHARDLAVFRAKKEGIPIIMGTATPALETL 364


>gi|295401189|ref|ZP_06811162.1| helicase domain protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294976782|gb|EFG52387.1| helicase domain protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 498

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 142/337 (42%), Gaps = 55/337 (16%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           +K Q+ A   +   ++Q + +   +    G+GKT V    +A A+E G +  I  P   +
Sbjct: 155 SKGQQRAAGAVEDAIAQNSEL--TVWAVCGAGKTEVLFQGIARALEMGKRVCIATPRTDV 212

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            ++    +++      +I   + G      +   L         +I  TH L    +++Y
Sbjct: 213 VRELAPRLRRVFPGVPLIA--LYGGSEDRGKSAPL---------VISTTHQL----LRFY 257

Query: 394 KLI-LVIVDEQHRF--GVQQRLKLTQ---KATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           +   ++++DE   F   V+  L+      +     ++ +TATP P        G      
Sbjct: 258 RAFDVMVIDEVDAFPYSVEPMLEYAAAKARKAESSLIYLTATPHPAWQRDIRRGKRKAVT 317

Query: 448 ITEKPAG--------------RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           I  +  G              R+ +K   +P N    V+ R++      K+A+   PQI+
Sbjct: 318 IPARYHGFPLPVPSFEWCGNWRRQLKRGRLPRNVAAWVLSRMET----KKQAFLFVPQID 373

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                    V+E+   + + +   I  +H    D ++   + +F++G   LL+ TT++E 
Sbjct: 374 ---------VLEQVVHIVKQWHERIEGVHA--EDPERAEKVQAFRDGRIPLLVTTTILER 422

Query: 554 GIDV--VDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           G+ V  +D +++  E+ + F  + L Q+ GRVGR  +
Sbjct: 423 GVTVPNIDVAVLGAED-DIFTESALVQIAGRVGRSAQ 458


>gi|294851042|ref|ZP_06791718.1| primosomal protein N' [Brucella sp. NVSL 07-0026]
 gi|294821685|gb|EFG38681.1| primosomal protein N' [Brucella sp. NVSL 07-0026]
          Length = 633

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 5/131 (3%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           ++ Q++A + + + +      + +L G  GSGKT V   A+A A++AG Q +I+ P   L
Sbjct: 101 SQDQQAAAEMLSEAVEAGGFSVSLLDGVTGSGKTEVYFEAVAKALDAGRQVLILLPEIAL 160

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            QQ   F+ ++             ++    R +   ++A G   ++ G  ++    + + 
Sbjct: 161 TQQ---FLDRFHDRFGAKPAKWHSDLAPRTRERVWRQVAEGTVRVVAGARSVL--FLPFK 215

Query: 394 KLILVIVDEQH 404
           +L L++VDE+H
Sbjct: 216 ELGLIVVDEEH 226


>gi|229011722|ref|ZP_04168904.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048]
 gi|229167295|ref|ZP_04295034.1| ATP-dependent RNA helicase [Bacillus cereus AH621]
 gi|228616171|gb|EEK73257.1| ATP-dependent RNA helicase [Bacillus cereus AH621]
 gi|228749519|gb|EEL99362.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048]
          Length = 450

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPDSKQTMLFSAT-MPK----------DIKKLAKRYMEEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRVSKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNFDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|209771328|gb|ACI83976.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|320642613|gb|EFX11861.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str.
           493-89]
 gi|320647966|gb|EFX16674.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str. H
           2687]
          Length = 457

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|255559772|ref|XP_002520905.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539871|gb|EEF41450.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 407

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 151/351 (43%), Gaps = 79/351 (22%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA--VEAGG---QAVIM 327
           P+  Q+ A+  I+     K R + I Q   G+GKT  ++IA+ A   V+      QA+I+
Sbjct: 57  PSAIQQRAVMPII-----KGRDV-IAQAQSGTGKT--SMIALTACQLVDTSSREVQALIL 108

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LA Q  + I        I      G        + LE   +G  H++ GT     
Sbjct: 109 SPTRELAAQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLE---YG-VHVVSGTPGRVC 164

Query: 388 DSIQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVL 437
           D I+   L      L+++DE       G + ++    +   P   V+L++AT     L +
Sbjct: 165 DMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEM 224

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           TS    D            PIK ++          +R ++ L EG K +++  + EE K 
Sbjct: 225 TSKFMTD------------PIKILV----------KRDELTL-EGIKQFFVAVEREEWK- 260

Query: 498 SNFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVM 534
             F ++ + +++L                       + +FT  ++ +HG M   +++++M
Sbjct: 261 --FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFT--VSSMHGDMPQKERDAIM 316

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
             F++GT ++LI T V   G+DV   S++I  +  +     +H++ GR GR
Sbjct: 317 GEFQSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI-GRSGR 366


>gi|156935931|ref|YP_001439847.1| primosome assembly protein PriA [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534185|gb|ABU79011.1| hypothetical protein ESA_03825 [Cronobacter sakazakii ATCC BAA-894]
          Length = 731

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ +     VE++
Sbjct: 220 LLAGVTGSGKTEVYLSVLENTLAQGKQALVLVPEIGLTPQT----IARFRERFNAPVEVL 275

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R  A  +   G+A I+IGT  ALF     +  L ++++DE+H    +Q+
Sbjct: 276 HSALNDSERLAAWLKAKSGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYKQQ 329


>gi|115840564|ref|XP_785431.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48
           [Strongylocentrotus purpuratus]
          Length = 360

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 142/340 (41%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK ++     K R + I Q   G+GKT    I++   ++      QA+I++P
Sbjct: 10  PSAIQQRAIKPVV-----KGRDV-IAQAQSGTGKTATFSISILQCLDTQVRETQALILSP 63

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I        +      G     +  + + ++  GQ H++ GT     D 
Sbjct: 64  TRELANQIQKVILALGDYMSVQCHSCIGG---TNVGEDIRKLDFGQ-HVVSGTPGRVFDM 119

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++    +   P   V+L +AT     L +TS
Sbjct: 120 IRRRNLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLFSATLPHEILEMTS 179

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGKKA 485
               D  +I  K      + IK   + + R +   + L             +  +  +K 
Sbjct: 180 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 239

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ +E+NF                +++ +HG M   ++E++M  F++G  ++L
Sbjct: 240 DWLT---EKMREANF----------------TVSSMHGDMPQKEREAIMKEFRSGASRVL 280

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I T V   G+DV   S++I  +  +     +H++ GR GR
Sbjct: 281 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI-GRSGR 319


>gi|78189083|ref|YP_379421.1| DEAD/DEAH box helicase-like [Chlorobium chlorochromatii CaD3]
 gi|78171282|gb|ABB28378.1| ATP-dependent RNA helicase CsdA [Chlorobium chlorochromatii CaD3]
          Length = 640

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 126/321 (39%), Gaps = 39/321 (12%)

Query: 299 QGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-VEI 354
           Q   G+GKT    + + A+++   A  QA+++AP   LA Q  E  ++Y +  +   V  
Sbjct: 53  QAQTGTGKTAAFALPILASIDIQQAEPQALVLAPTRELAIQVAEAFQRYAEYLKGFHVVP 112

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRF 406
           I G      + + L R       +++GT     D I+   L        +L   DE  R 
Sbjct: 113 IYGGQDYGIQFRMLRR----GVQVVVGTPGRVMDHIRRGSLNLTHLKTLVLDEADEMLRM 168

Query: 407 GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           G    ++  L Q      V L +AT  P            I +I +K   +    T+   
Sbjct: 169 GFIDDVEWILEQTPAGRQVALFSATMPP-----------PIRRIAQKYLDQPAEVTIQTK 217

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------ 518
              +D + +R  VV   G     I  +I E +  +   +  R  ++       +      
Sbjct: 218 TTTVDTIRQRYWVV--GGSHKLDILTRILEVEPFDGMIIFSRTKTMTIELAEKLQARGYA 275

Query: 519 -AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            A ++G M    +E  ++  KNG   +++AT V   G+DV   S ++  +      + +H
Sbjct: 276 AAALNGDMPQNQRERTIEQLKNGNINIVVATDVAARGLDVERISHVVNYDIPSDTESYVH 335

Query: 578 QLRGRVGRGEEISSCILLYHP 598
           ++ GR GR       IL   P
Sbjct: 336 RI-GRTGRAGRAGDAILFVAP 355


>gi|74187323|dbj|BAE22641.1| unnamed protein product [Mus musculus]
          Length = 406

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 126/291 (43%), Gaps = 41/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +E      QA+++AP   LAQQ  + +            
Sbjct: 73  IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-------SIQYYKL-ILVIVDEQHR 405
              G     + R  ++++     HII+GT     D       S +Y K+ +L   DE   
Sbjct: 133 ACIGG---TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189

Query: 406 FGVQQRL-KLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + QK  +   V+L++AT +P           D+ ++T+K   R PI+   I
Sbjct: 190 RGFKDQIYDIFQKLNSNTQVVLLSAT-MPS----------DVLEVTKKFM-RDPIR---I 234

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E ++      ++  W    + +  E+          N R  V+        
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++   IDV   S++I
Sbjct: 295 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARSIDVQQVSLVI 345


>gi|315289076|gb|EFU48474.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3]
          Length = 432

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 138/350 (39%), Gaps = 62/350 (17%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           T  Q++A+  IL       + +R+ Q   GSGKT    + +   ++A     QA+++ P 
Sbjct: 2   TPVQDAALPAIL-----AGKDVRV-QAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPT 55

Query: 331 GILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             LA Q       + ++  NT+I+   + G  P   +R +L+       HII+ T     
Sbjct: 56  RELADQVAGELRRLARFLPNTKILT--LCGGQPFGMQRDSLQH----APHIIVATPGRLL 109

Query: 388 DSIQYYKLIL-----VIVDEQHR---------------FGVQQRLKLTQKATAPHVLLMT 427
           D +Q   + L     +++DE  R               F    R  L   AT P  +   
Sbjct: 110 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 169

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           +  + R  +   +   D     E+       K  I  + R+        + L +      
Sbjct: 170 SGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRL--------LSLHQPSSCVV 221

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C       + + +SV +  N + +   S    +HG +   D++  +  F NG+ ++L+A
Sbjct: 222 FC-----NTKKDCQSVCDVLNEVGQSALS----LHGDLEQRDRDQTLVRFANGSARVLVA 272

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
           T V   G+D+   S+ ++ N E     ++H  R GR  R    G  IS C
Sbjct: 273 TDVAARGLDI--KSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFC 320


>gi|269968866|ref|ZP_06182847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio
           alginolyticus 40B]
 gi|269826516|gb|EEZ80869.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio
           alginolyticus 40B]
          Length = 421

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 142/339 (41%), Gaps = 50/339 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----AGGQAVI 326
           +PT  QE +I  +L   + KN +L   Q   G+GKT    + +   V+        QA+I
Sbjct: 29  TPTPVQEKSIPHVL---AGKN-LLAAAQ--TGTGKTAAFGLPIIQTVQQKKLNGTPQALI 82

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-- 384
           + P   LAQQ ++ + +Y+  T++ +  + G      +++ LE      A I+I T    
Sbjct: 83  LVPTRELAQQVFDNLNQYSAETELRIVCVYGGTSIGVQKRKLEE----GADILIATPGRL 138

Query: 385 ---LFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTLV 436
              LF  ++   K  ++++DE  R    G    L+    +      +LL +AT   R   
Sbjct: 139 LDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQILLFSATFEKRIKT 198

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +         K+ E P     ++  + P N   E + ++   + + +K   +   I  + 
Sbjct: 199 IAY-------KLMESP-----VEVEVSPANTTAETVTQMVYPVDKKRKRELLAYLIGSR- 245

Query: 497 ESNFRSVV--ERFNSLHEHFTSSIAI-------IHGRMSDIDKESVMDSFKNGTCKLLIA 547
             N++ V+   +     +     + +       I+G  S   ++  +D FK G  + LIA
Sbjct: 246 --NWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIA 303

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           T V   G+D+ +   ++  +        +H++ GR GR 
Sbjct: 304 TDVAARGLDIQELEQVVNFDMPFKAEDYVHRI-GRTGRA 341


>gi|257486807|ref|ZP_05640848.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 410

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 141/334 (42%), Gaps = 47/334 (14%)

Query: 291 KNRMLRILQGDVGSGKTLVALIAM------AAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
           + R LR+     GSGKT   ++ +       A V    +AVI+ P   LAQQ  + ++++
Sbjct: 1   QGRDLRV-TAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAVILLPTRELAQQTLKEVERF 59

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VI 399
           +Q T +   +ITG      +   L ++      I+IGT     + +    L L     ++
Sbjct: 60  SQFTFVKAGLITGGEDFKVQAAMLRKVPD----ILIGTPGRLLEQLNAGNLDLKHVEVLV 115

Query: 400 VDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKI 448
           +DE  R    G  + ++    + A     +L +AT     L      VL     + ++ +
Sbjct: 116 LDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLREMIGKVLKDPQHLQVNSV 175

Query: 449 TEKPAG-RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---SNFRSVV 504
           +E  +G R  I T        D  + + +V+        W+      +K    +N +++ 
Sbjct: 176 SELASGTRHQIITA-------DHNVHKEQVL-------NWLLANETYQKAIIFTNTKAMA 221

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +R             ++HG     D+++ +D  K G  K+++AT V   G+DV    ++I
Sbjct: 222 DRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARGLDVEGLDMVI 281

Query: 565 IENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
             +    G   +H++ GR GR G +  +  L+ H
Sbjct: 282 NFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICH 314


>gi|145233847|ref|XP_001400296.1| ATP-dependent RNA helicase eIF4A [Aspergillus niger CBS 513.88]
 gi|134034144|sp|A2QEN5|IF4A_ASPNC RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|134057232|emb|CAK44496.1| unnamed protein product [Aspergillus niger]
          Length = 398

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 137/325 (42%), Gaps = 68/325 (20%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           P+  Q+ AIK I+           I Q   G+GKT    I+    ++      QA+I+AP
Sbjct: 48  PSAIQQRAIKPIIAGHD------VIAQAQSGTGKTATFSISALQKIDQELKACQALIVAP 101

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ  + +        I      G     + R  +  +  G   +++GT     D 
Sbjct: 102 TRELAQQIQKVVVAIGDFMNIECHACIGG---TNVRDDMNALRAG-PQVVVGTPGRIHDM 157

Query: 390 I--------QYYKLILVIVDEQHRFGVQQRL----KLTQKATAPHVLLMTATPIPRTLVL 437
           I        Q    IL   DE    G  +++    +L  ++T   V L++AT +P+    
Sbjct: 158 IERRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQST--QVTLLSAT-MPQ---- 210

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                 D+ ++T K   R PI+ ++          ++ ++ L EG K ++I  + EE K 
Sbjct: 211 ------DVLEVTTKFM-RDPIRILV----------KKQELTL-EGIKQFYIAVEKEEWKL 252

Query: 498 SNFRSVVE---------------RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKN 539
                + E               + + L +  T+   +++ +HG M    ++ +M  F++
Sbjct: 253 DTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQGQRDVIMKEFRS 312

Query: 540 GTCKLLIATTVIEVGIDVVDASIII 564
           G+ ++LIAT ++  GIDV   S++I
Sbjct: 313 GSSRVLIATDLLARGIDVQQVSLVI 337


>gi|39936732|ref|NP_949008.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192292558|ref|YP_001993163.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39650588|emb|CAE29111.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192286307|gb|ACF02688.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 474

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 117/285 (41%), Gaps = 31/285 (10%)

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   L+ Q  +    Y ++  +   +  G +P   + ++L     G   +++ T  
Sbjct: 86  LVLSPTRELSGQILDSFNAYGRHVHLSAALAIGGVPMGRQVRSL----MGGVDVLVATPG 141

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLT 438
              D +Q   L L     +++DE  R      +   +K       ++   PI R TL  +
Sbjct: 142 RLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRK-------IVAKLPIKRQTLFFS 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    DI+ + E+   R P +  + P++   E I +  + L    K   +  QI +  + 
Sbjct: 195 ATMPKDIADLAEQML-RDPARVAVTPVSSTVERINQRVIQLDHSAKPAALA-QILKDDKV 252

Query: 499 NFRSVVERFNSLHEHFTSSIA-------IIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           N   V  R     +     +A        IHG  S   +E V+ +F+ G  + L+AT + 
Sbjct: 253 NQALVFTRTKHGADKVVKGLARAGITADAIHGNKSQNYRERVLAAFRTGELRTLVATDIA 312

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
             GIDV   S ++  +  +     +H++ GR  R    G  IS C
Sbjct: 313 ARGIDVDGVSHVVNFDLPNIPETYVHRI-GRTARAGADGTAISLC 356


>gi|254244068|ref|ZP_04937390.1| primosomal protein N' [Pseudomonas aeruginosa 2192]
 gi|126197446|gb|EAZ61509.1| primosomal protein N' [Pseudomonas aeruginosa 2192]
          Length = 739

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 21/178 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   + AG QA+++ P I +  Q    F +++     ++   +
Sbjct: 225 LLAGVTGSGKTEVYLQLIRETLAAGRQALVLIPEINLGPQTLARFERRFNARIALLHSAL 284

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           T       R  A      G+A I+IGT  ALF       +  L+IVDE+H    +Q+  L
Sbjct: 285 TDR----ERLDAWLAARDGEADIVIGTRSALF---TPLKRPGLIIVDEEHDASYKQQDGL 337

Query: 415 TQKA-----------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              A             P +LL +ATP   +L     G   + ++T++  G  P K +
Sbjct: 338 RYHARDLALVRARLENVP-ILLGSATPALESLHNAQAGRYGLLRLTQRAGGAHPPKFI 394


>gi|333007298|gb|EGK26780.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-272]
 gi|333019294|gb|EGK38578.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-227]
          Length = 457

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
                G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 TSC--GGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E ++S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVEQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLDQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|320589197|gb|EFX01659.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
          Length = 734

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 132/337 (39%), Gaps = 72/337 (21%)

Query: 302 VGSGKTLVALIAMAAAVEA-----------GGQAVIMAPIGILAQQHYEFIKKY-TQNTQ 349
            GSGKT   L+ +   ++            G  A+I+AP   LAQQ     +K+ T    
Sbjct: 349 TGSGKTAAFLLPLLVYIKELPPLDEISKNDGPYALILAPTRELAQQIESEARKFATPFGY 408

Query: 350 IIVEIITGNMPQAHRRKALERIAHG---QAHIIIGTHALFQDSIQYYKLIL-----VIVD 401
            +V I+ G+        +LE  A+     A I++ T     D I+   L+L     VI+D
Sbjct: 409 TVVSIVGGH--------SLEEQAYALRNGAEIVVATPGRLVDCIERRLLVLSQCCYVIMD 460

Query: 402 EQHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDI----------DIS 446
           E  R    G +  L   L    TA            R +     G I           + 
Sbjct: 461 EADRMIDLGFEDPLNKILDAMPTANEKPDTDEAEDARAMTQYLGGKIRYRETMMYTATMP 520

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIE-----------------RLKVVLSEGKKAYWIC 489
            + EK A R   +  I+ I  + E +E                 RL+ +L  G+ A  I 
Sbjct: 521 PVVEKIAKRYLRRPAIVTIGNVGEAVETVEQRVEFVSGEDRRKKRLQEILQSGQFAAPII 580

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +  K+  N   V +    +   FT+    +HG  +   +E+ + + + G   +L+AT 
Sbjct: 581 VFVNIKR--NCEMVAKDVRQMG--FTT--VTLHGSKTQDQREAALQALRQGKADVLVATD 634

Query: 550 VIEVGIDVVDASIIIIENAEHFGLA-QLHQLRGRVGR 585
           +   GIDV D S++I     +F +A  + Q   R+GR
Sbjct: 635 LAGRGIDVADVSLVI-----NFNMATSVEQYTHRIGR 666


>gi|313619263|gb|EFR91012.1| ATP-dependent RNA helicase DbpA [Listeria innocua FSL S4-378]
          Length = 435

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 131/318 (41%), Gaps = 47/318 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKT    I +A  V   E   QA+I+ P   LA Q         +  +I   
Sbjct: 5   VAKSQTGSGKTAAFAIPIAEQVVWEENKPQALIIVPTRELAMQVKTECTNIGRFKRIKAA 64

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
            I G  P A ++  L +    + HI++GT     D I+           L+L  VDE   
Sbjct: 65  AIYGQSPFAKQKLELSQ----KNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLS 120

Query: 406 FGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD--IDISKITEKPAGRKPIKT 460
            G   +++  L++       L  +AT P     ++    D  + I   +EK     PI  
Sbjct: 121 MGFIDQVEDILSRLPKQRQNLFFSATLPEEMQDLIKRYQDNPMVIEMASEKT---NPIFH 177

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           V +  +  ++ ++   V+++E   +  I           F +   + + L +      + 
Sbjct: 178 VEMQTDNKEKTLK--DVLITENPDSAII-----------FCNTKNQVDELTDLLDVKASK 224

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII-----IENAEHFGLAQ 575
           IHG +   D+   MD FK+G  + LIAT V   GIDV + S++I     IE   +     
Sbjct: 225 IHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENY----- 279

Query: 576 LHQLRGRVGRGEEISSCI 593
           +H++ GR GR  +    I
Sbjct: 280 VHRI-GRTGRAGKSGKAI 296


>gi|296422328|ref|XP_002840713.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636935|emb|CAZ84904.1| unnamed protein product [Tuber melanosporum]
          Length = 453

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 151/356 (42%), Gaps = 58/356 (16%)

Query: 261 IAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +++ +L  I F     P+  QE A+  +L +  +      I Q   G+GKT   ++ M  
Sbjct: 76  LSKDLLEGIYFMNFKKPSMIQERALPLLLSNPPRN----MIGQSQSGTGKTAALVLTMLT 131

Query: 317 AVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
            ++   +  +A+ +AP   LA+Q    ++   Q T +  +    NM +  +R        
Sbjct: 132 RIDMSVSNVEALCLAPTRELAKQIQRVVQTMGQFTNVKAQFAIPNMAKCSQRI------- 184

Query: 374 GQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQHRF----GV-QQRLKLTQK-ATAPH 422
             AHI++GT     D IQ  +L      L ++DE        G+ +Q L++ +   +   
Sbjct: 185 -DAHIVVGTPGTVLDLIQRNQLAVEHLKLFMLDEVDNMLELQGLGEQCLRVKRNIPSTTQ 243

Query: 423 VLLMTATPIPRTL-----VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE---VIER 474
           + L +AT              +   I +       AG   IK + +     ++   V+  
Sbjct: 244 IALFSATCSDEAFKYMYRFAPNANRIILKNTEPSLAG---IKQLCMDCQSEEDKYRVLLE 300

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  VL+ G    +      +K+E+   S ++R   + EH    +A +H      D++  +
Sbjct: 301 LYHVLTVGSSIIF-----AKKRETT--SEIQRRIEVDEH---KVATLHSAQDRPDRDKAV 350

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIII------IENAEHFGLAQLHQLRGRVG 584
            SF +G  K+LI T V+  GIDV   S+++        N +   +A LH++ GR G
Sbjct: 351 HSFLSGKAKVLITTDVLVRGIDVATVSMVVNYDLPLDMNRQPDPVAYLHRV-GRTG 405


>gi|290477224|ref|YP_003470141.1| primosomal protein N' (factor Y) directs replication fork assembly
           at D-loops, ATP-dependent [Xenorhabdus bovienii SS-2004]
 gi|289176574|emb|CBJ83383.1| primosomal protein N' (factor Y) directs replication fork assembly
           at D-loops, ATP-dependent [Xenorhabdus bovienii SS-2004]
          Length = 732

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 21/174 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+I+ P IG+  Q     I+++ +     V+++
Sbjct: 221 LLAGITGSGKTEVYLSVLENILAQGKQALILVPEIGLTPQT----IRRFRERFNAPVDVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              +  + R     R   G   I+IGT  ALF     +  L ++I+DE+H    +Q+   
Sbjct: 277 HSALNDSERLSVWLRAKRGDNAIVIGTRSALF---TPFAHLGVIIIDEEHDSSYKQQEGW 333

Query: 415 -----------TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
                       +K   P +++ TATP   TL     G      +T++    KP
Sbjct: 334 RYHARDLAVFRAKKENIP-IMMGTATPALETLFNVQQGKYRQLTLTQRAGEAKP 386


>gi|268611570|ref|ZP_06145297.1| ATP-dependent DNA helicase RecQ [Ruminococcus flavefaciens FD-1]
          Length = 610

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           H  +SD ++ S  D F    C++++AT    +GID  + S +I  N     +   +Q  G
Sbjct: 258 HAGLSDSERRSNQDDFIYDRCQIMVATNAFGMGIDKSNVSFVIHYNMPK-DIESYYQEAG 316

Query: 582 RVGRGEEISSCILLY 596
           R GR  E + C++LY
Sbjct: 317 RSGRDGEPAECVILY 331


>gi|163751114|ref|ZP_02158344.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161329070|gb|EDQ00142.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 445

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 139/359 (38%), Gaps = 61/359 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL-------IAMAAAVEAGGQA 324
           +PT+ Q+ AI      +S K+ M        GSGKTL  L       I+  A  +   + 
Sbjct: 23  TPTEIQQQAIP---VGLSGKDLMA---SSKTGSGKTLAFLLPAMQRIISTRALSKRDPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q Y  ++    NTQ     I G      + K L R      H ++ T  
Sbjct: 77  LILLPTRELANQVYGQLRLLVANTQYKAMKILGGENFNDQAKLLAR----DPHFVVATPG 132

Query: 385 LFQDSIQYYKL-----ILVIVDEQHR---FGVQQRLKLTQKATAPH----VLLMTAT--- 429
              D +  + L      L+I+DE  R    G  ++LK   KA A H     L+ +AT   
Sbjct: 133 RLADHLAQHHLHLNGLELLILDEADRMLDLGFAEQLKAINKA-ADHKRRQTLMFSATLDH 191

Query: 430 ----PIPRTLVLT------SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
                I   L+ +        G+I+   IT++          I   + +D     L  +L
Sbjct: 192 GLISNIAAELLKSPEHVDIGAGNIENQDITQR----------IYLADHLDHKEALLDSIL 241

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +       I       ++   R   +   S H+      A + G +    +  +MD F  
Sbjct: 242 NNETHKQIII--FTATRDDTDRLATKLAASGHK-----TASLSGNLKQSARNQIMDQFSR 294

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G  K+L+ T +   G+D+++ S++I  +   F    +H++ GR GR       I    P
Sbjct: 295 GLQKILVTTDIASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDAISFVGP 352


>gi|270001921|gb|EEZ98368.1| hypothetical protein TcasGA2_TC000825 [Tribolium castaneum]
          Length = 629

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 129/337 (38%), Gaps = 68/337 (20%)

Query: 302 VGSGKTLVALIAMAAAV-------EAGGQAVIMAPIGILAQQHYEFIK---KYTQNTQII 351
            GSGKTL  LI     +         G   +I++P   L+ Q +  +K   KY  +T  +
Sbjct: 176 TGSGKTLAFLIPAVELIYKLKFMPRNGTGVIIISPTRELSMQTFGVLKELMKYHHHTYGL 235

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHR 405
           V      M    R+   ++++ G  +I++ T     D +Q      +  L  +++DE  R
Sbjct: 236 V------MGGTSRQTEAQKLSKG-INILVATPGRLLDHMQNTPDFLFKNLQCLVIDEADR 288

Query: 406 F---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
               G ++ +K  +         +L +AT   +T  LTSL                 +K 
Sbjct: 289 ILDIGFEEEMKQIINLLPKRRQTMLFSATQTKKTEALTSLA----------------LKK 332

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---------KESNFRSVVERFNSL- 510
             I +   D   E     L +G   Y +CP   EK         K++  + V+  F+S  
Sbjct: 333 EPIYVGVDDAKSEATVTGLEQG---YVVCPS--EKRLLVLFTFLKKNRKKKVMVFFSSCM 387

Query: 511 -----HEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
                HE F      +  IHG+     + +    F N    +L+ T V   G+D+     
Sbjct: 388 SVKFHHELFNYIDLPVMCIHGKQKQAKRTTTFFQFCNAESGILLCTDVAARGLDIPAVDW 447

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           I+  +        +H++ GR  RGE  S   LL   P
Sbjct: 448 IVQYDPPDDPKEYIHRV-GRTARGEGSSGHALLILRP 483


>gi|145344838|ref|XP_001416931.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577157|gb|ABO95224.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 474

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 124/316 (39%), Gaps = 41/316 (12%)

Query: 302 VGSGKTLVALIA----MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            GSGKTL  L+     +    E G +A+++AP   LA Q    ++  ++    +   +  
Sbjct: 71  TGSGKTLAFLLPIIMKLGTHEEGGARALLLAPTKELAGQSARILRILSRGVSGLKSCLL- 129

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQ 409
                   KA       +  I++ T       L  D I   K++ +++DE  +    G  
Sbjct: 130 -------TKATAGNDFSKVDIVVATPMRLKILLQHDKIDLSKVLYLVLDEADKLFEMGFV 182

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE--KPAGRKPIKTVIIPINR 467
           +++          V       + R L   +L +    K+ E  +    +PI+  +   N 
Sbjct: 183 EQIDAV-------VAACDNKDVTRALFSATLPE----KVEELARSVMARPIRLTVGERNS 231

Query: 468 IDEVI-ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAI 520
               I +R+     E  K   +   I E  +     F    ER   L +  T     I +
Sbjct: 232 ASNTISQRMVFCGHEAGKLLALRQIIREGIKPPVIIFTQSKERAKHLAKELTGDGLHIGL 291

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IH  MSD  +E  +D F+ G   +LIAT ++  G+D V  S +I  +      + +H++ 
Sbjct: 292 IHAEMSDSKREEQVDRFRMGETWVLIATDLMARGMDFVGVSTVINFDFPGSPTSYIHRI- 350

Query: 581 GRVGRGEEISSCILLY 596
           GR GR     + I  +
Sbjct: 351 GRSGRAGRPGAAITFF 366


>gi|50549245|ref|XP_502093.1| YALI0C21472p [Yarrowia lipolytica]
 gi|74659998|sp|Q6CB69|DED1_YARLI RecName: Full=ATP-dependent RNA helicase DED1
 gi|49647960|emb|CAG82413.1| YALI0C21472p [Yarrowia lipolytica]
          Length = 618

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 115/255 (45%), Gaps = 24/255 (9%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHGQAH 377
           A+++AP   L  Q Y+  KK+   + +   ++ G      + + +ER       A G+  
Sbjct: 247 ALVLAPTRELVSQIYDEAKKFAYRSWVRPCVVYGGADIGEQMRNIERGCDLLVAAPGRLV 306

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK-LTQKATAPHV----LLMTATPIP 432
            +I    +  ++I+Y  L+L   D     G + +++ + Q +  P V     LM +   P
Sbjct: 307 DLIDRGKVSLENIKY--LVLDEADRMLDMGFEPQIRAIVQGSGMPDVNERQTLMFSATFP 364

Query: 433 RTLVLTS---LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           R + + +   L D     +    +  + I   +  +   D++   L ++ + GK    + 
Sbjct: 365 RNIQMLARDFLKDYIFLSVGRVGSTSENITQKVEYVEDGDKISALLDILSAAGKGLTLVF 424

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +E K+ +++   V +     E F ++   IHG  S  D+E  ++ F++GT  +L+AT 
Sbjct: 425 --VETKRGADYLCDVLQ----SEDFPATS--IHGDRSQRDRERALEMFRDGTTPILVATA 476

Query: 550 VIEVGIDVVDASIII 564
           V   G+D+ + + ++
Sbjct: 477 VAARGLDIPNVTHVV 491


>gi|14590845|ref|NP_142917.1| helicase [Pyrococcus horikoshii OT3]
 gi|3257417|dbj|BAA30100.1| 873aa long hypothetical helicase [Pyrococcus horikoshii OT3]
          Length = 873

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%)

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L   F   I    G ++ +++  +   F+ G  K+L+AT  +E+GIDV D   +I     
Sbjct: 298 LFSEFFDKITTYKGTLTKLERWKIERDFREGNLKVLLATNALELGIDVGDLDAVINYGIP 357

Query: 570 HFGLAQLHQLRGRVGR 585
             GL  L Q  GR GR
Sbjct: 358 SDGLFSLIQRFGRAGR 373


>gi|119773652|ref|YP_926392.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
 gi|119766152|gb|ABL98722.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
          Length = 637

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 138/344 (40%), Gaps = 43/344 (12%)

Query: 272 SPTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVI 326
           +PT  Q ++I+ ++  QD+        + Q   G+GKT    + +  +V+A     Q ++
Sbjct: 28  TPTPIQAASIQPLMSGQDI--------LGQAQTGTGKTGAFALPLLCSVDANLNAPQILV 79

Query: 327 MAPIGILAQQHYEFIKKYTQNTQII-VEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +AP   LA Q  E    Y ++ +   V  I G      + +AL R       +++GT   
Sbjct: 80  LAPTRELAVQVAEAFTSYAKHMKGFHVLPIYGGQSMYQQLQALRR----GPQVVVGTPGR 135

Query: 386 FQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D ++           L+L   DE  + G    ++           ++  TP  R L L
Sbjct: 136 VMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEW----------ILEHTPESRQLAL 185

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            S    +  K       R P+   I   +   E IE+  V +S+  K   +   +E +  
Sbjct: 186 FSATMPEQIKRVANKHLRNPVNISIAASHTTVESIEQRFVQVSQHNKLEALVRVLEVENT 245

Query: 498 SNFRSVVERFNS---LHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                 V   NS   L E   +   + + +HG M+   +E  +D  K+G   +LIAT V 
Sbjct: 246 EGIIIFVRTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILIATDVA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             G+DV     ++  +  +   A +H++ GR GR       IL 
Sbjct: 306 ARGLDVERIGHVVNYDIPYDTEAYVHRI-GRTGRAGRTGMAILF 348


>gi|85113073|ref|XP_964459.1| hypothetical protein NCU02803 [Neurospora crassa OR74A]
 gi|74654326|sp|Q7SEL0|PRP28_NEUCR RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp-28
 gi|28926242|gb|EAA35223.1| hypothetical protein NCU02803 [Neurospora crassa OR74A]
          Length = 728

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 144/382 (37%), Gaps = 64/382 (16%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGD--VGSGKTLVALIAMAAAVEA- 320
           I++N+ +  PT  Q +AI   LQ         R L G    GSGKT   L+ +   +   
Sbjct: 307 IVKNVGYDEPTPIQRAAIPIALQ--------ARDLIGVAVTGSGKTAAFLLPLLVYISEL 358

Query: 321 ----------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                     G  A+I+AP   L QQ     KK+       V  I G      +  AL  
Sbjct: 359 PPLTEYNKNDGPYALILAPTRELVQQIESEAKKFATPLGFTVVSIVGGHSLEEQAFAL-- 416

Query: 371 IAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF---GVQQRLKL-------- 414
                A II+ T     D ++     + +    I+DE  R    G ++ L          
Sbjct: 417 --RNGAEIIVATPGRLVDCLERRLLVFSQCCYTIMDEADRMIDQGFEEPLTKILDAMPVT 474

Query: 415 -----TQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                T  A  P ++        R   T++ T+     + +I +K   R  I T+     
Sbjct: 475 NEKPDTDDAENPQLMSRYVDGKDRYRQTMMYTATMPPIVERIAKKYLRRPAIVTIGNAGE 534

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH----------FTS 516
            +D V +R++ V  E K+   +    E      F+  +  F ++  +             
Sbjct: 535 AVDTVEQRVEFVSGEDKRKKRLQ---EILNSGQFKPPIIVFVNIKRNCDMVARDIKGMGY 591

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S   +HG  +   +E+ + S +NG   +L+AT +   GIDV D S+++  N      +  
Sbjct: 592 SAVTLHGSKTQEQREAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYT 651

Query: 577 HQLRGRVGRGEEISSCILLYHP 598
           H++ GR GR  +    I    P
Sbjct: 652 HRI-GRTGRAGKSGVAITFLGP 672


>gi|237802158|ref|ZP_04590619.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331025015|gb|EGI05071.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 644

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 120/276 (43%), Gaps = 35/276 (12%)

Query: 386 FQDSIQYYKLILVIVDEQH---RFGVQQR---LKL---TQKATAPHVLLMTATPIPRTLV 436
           F++ I    + L++VDE H    +G   R   LKL    ++   P  LL+TAT  P+ ++
Sbjct: 119 FRNFIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQREFNIPQTLLLTATATPQVII 178

Query: 437 -LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +     I    +      R  +   + P++  D+   RL   L+E +    I     +K
Sbjct: 179 DMQDKFAIAPDDVVTTGFYRANLHLWVKPVSGRDKR-RRLVEWLNERQGQPTIVYVTLQK 237

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              +  + +E+ N L        +  H  + +  +ES+   F +G+   ++AT    +GI
Sbjct: 238 TAEHIAAHLEQ-NGL------PASAYHAGLPNDQRESIQKRFMDGSLNCIVATIAFGMGI 290

Query: 556 DVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           D  D     I N  HF L +      Q  GR GR    S C++L     +++S   L+VL
Sbjct: 291 DKSD-----IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVL----ANRDS---LNVL 338

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           +N   G     E + +  E ++L  +Q G  +FL+ 
Sbjct: 339 ENFVYGDTPEREGIARVLE-DLLNARQDGQWEFLLG 373


>gi|229133365|ref|ZP_04262193.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196]
 gi|228650038|gb|EEL06045.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196]
          Length = 450

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPDSKQTMLFSAT-MPK----------DIKKLAKRYMEEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRVSKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNFDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|194433859|ref|ZP_03066133.1| ATP-independent RNA helicase DbpA [Shigella dysenteriae 1012]
 gi|194417962|gb|EDX34057.1| ATP-independent RNA helicase DbpA [Shigella dysenteriae 1012]
 gi|320180214|gb|EFW55149.1| ATP-dependent RNA helicase DbpA [Shigella boydii ATCC 9905]
          Length = 457

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSTRVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|189425674|ref|YP_001952851.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421933|gb|ACD96331.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 439

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           + A + G +S   +++ MD F+NGT ++L+AT +   GIDV   S +I  +      A +
Sbjct: 265 TAASLQGNLSQNRRQAAMDGFRNGTYQILVATDIAARGIDVSQVSHVINYDIPDTSEAYI 324

Query: 577 HQLRGRVGRG 586
           H++ GR GR 
Sbjct: 325 HRI-GRTGRA 333


>gi|221064954|ref|ZP_03541059.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220709977|gb|EED65345.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 469

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 129/315 (40%), Gaps = 46/315 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I Q   GSGKT    + M   +       QA+++ P   LA Q    I++  +    I V
Sbjct: 55  IAQASTGSGKTAAFGLPMVDRLNPRWFAVQALVLCPTRELADQVATEIRRLARAQDNIKV 114

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G +P  ++  +LE      AHI++GT     D ++  KL +     +++DE  R  
Sbjct: 115 VTVYGGVPSRNQIASLEN----GAHIVVGTPGRVMDLMERGKLDIGNLKTLVLDEADRML 170

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS--LGDIDISKI-TEKPAGRKPIK 459
              F       + Q       LL +AT       L S  + D    K+ T+  AG+    
Sbjct: 171 DMGFLGDIETVVRQCPVDRQTLLFSATYPEGIASLASRFMRDPQTVKVATQHSAGKIE-- 228

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYW-------ICPQIEEKKESNFRSVVERFNSLHE 512
                  R  EV  R KV       A++        C       +   R VV   + L  
Sbjct: 229 ------QRWYEVGAREKVATVARLLAHFRPESSIAFC-----NTKQQCRDVV---SELQA 274

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              S++A+  G +   +++ V+  F N +C +L+AT V   G+D+ D S +I  +     
Sbjct: 275 QGFSALALF-GELEQRERDEVLVQFANKSCSVLVATDVAARGLDIADLSAVINVDVTPDP 333

Query: 573 LAQLHQLRGRVGRGE 587
              +H++ GR GRG+
Sbjct: 334 EVHIHRI-GRTGRGD 347


>gi|114799942|ref|YP_759839.1| ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444]
 gi|114740116|gb|ABI78241.1| ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444]
          Length = 464

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 170/412 (41%), Gaps = 75/412 (18%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL------ 308
           + + G+I   + +    +PT  QE AI  ++Q       ++ + Q   G+GKTL      
Sbjct: 12  LGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRD----IVGLAQ--TGTGKTLAFAAPI 65

Query: 309 ---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
              ++  A  A V  G + +++AP   LA Q       Y     + V ++ G      + 
Sbjct: 66  LDRLSRNASPAPVR-GTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQI 124

Query: 366 KALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           + LER     AHI++ T       + Q ++   K+  +I+DE       Q L L      
Sbjct: 125 RQLER----GAHILVATPGRLIDLMEQRAVSLDKVETLILDE-----ADQMLDLGFI--- 172

Query: 421 PHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAG---RKPIKTVIIPINRIDEVIER 474
            H L   A  +P   +TL  ++     + K  E  A    R P +  + P       IE+
Sbjct: 173 -HALRAIAKNVPSKRQTLFFSAT----MPKAVESLAATFLRNPAEVSVAPPATTAGRIEQ 227

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH----------EHFTSSIAIIHGR 524
               + + +KA  +   IE+ ++   RS +    + H          +    S+AI HG 
Sbjct: 228 RVCFVEQPEKASLL---IEKIRDPELRSAIVFTRTKHGADGVVKRLAKADIDSVAI-HGN 283

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII-----ENAEHFGLAQLHQL 579
            S   +E  +++FK G   +L+AT +   GI  VDA   +I     +  E F    +H++
Sbjct: 284 KSQSQREKALEAFKAGRVPILVATDIAARGIH-VDALTHVINYDLPDVPEQF----VHRI 338

Query: 580 RGRVGR----GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            GR  R    G  IS C     P L   +  +L+ LK   +G  + +E L++
Sbjct: 339 -GRTARAGNSGVAISFCSRDERPTL--RAIEKLTGLKLAPNGVSLPDEPLRK 387


>gi|74142079|dbj|BAE41100.1| unnamed protein product [Mus musculus]
          Length = 411

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 147/343 (42%), Gaps = 63/343 (18%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    +++   ++      QA+I+AP
Sbjct: 61  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAP 114

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 115 TRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 167

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++ +    +   P   V+L++AT     L 
Sbjct: 168 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKELIYDVYRYLPPATQVVLISATLPHEILE 227

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEG 482
           +T+    D  +I  K      + IK   + + R +              I +  +  +  
Sbjct: 228 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 287

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 288 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 328

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           ++LI+T V   G+DV   S+II  +  +     +H++ GR GR
Sbjct: 329 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGR 370


>gi|49485622|ref|YP_042843.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297208523|ref|ZP_06924952.1| helicase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300912615|ref|ZP_07130058.1| helicase [Staphylococcus aureus subsp. aureus TCH70]
 gi|49244065|emb|CAG42491.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|296886778|gb|EFH25682.1| helicase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886861|gb|EFK82063.1| helicase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 360

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 160/363 (44%), Gaps = 74/363 (20%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++ F  ++ Q  A + I++ + ++  +L  L    G+GKT +    +  A   G    I+
Sbjct: 22  HLSFELSEQQSYASEHIVRAIRKRQTIL--LYAVTGAGKTEMMFQGIQYARIQGDNIAIV 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA------HIIIG 381
           +P                    ++VEI +  +  A   + ++ I H Q+      H ++ 
Sbjct: 80  SP-----------------RVDVVVEI-SKRIKDAFLNEDID-ILHQQSRQQFEGHFVVC 120

Query: 382 T-HALFQDSIQYYKLILVIVDEQHRF------GVQQRLKLTQKATAPHVLLMTATPIPRT 434
           T H L++   Q++  I +  DE   F       +QQ LK + K      + MTATP P+ 
Sbjct: 121 TVHQLYRFK-QHFDTIFI--DEVDAFPLSMDKNLQQALKSSSKVEHA-TIYMTATP-PKQ 175

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPI--------NRIDEVIERLKVVLSEGKKAY 486
           L    L +I    I + PA R   K++ +P         N+I +++ R+           
Sbjct: 176 L----LSEIPHENIIKLPA-RFHKKSLPVPKYRYFKLNNNKIQKMLYRI----------- 219

Query: 487 WICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            +  QI  ++ +     N  ++++ F S+++   + +  +H    D+ +   ++  +NG 
Sbjct: 220 -LQDQINNQRYTLVFFNNIETMIKTF-SVYKQKITKLTYVHS--EDVFRFEKVEQLRNGH 275

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI-SSCILLYHPPL 600
             ++  TT++E G  + +  +++I+ A  +    L Q+ GRVGR  E  +  +L +H  +
Sbjct: 276 FDVIFTTTILERGFTMANLDVVVID-AHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGV 334

Query: 601 SKN 603
           S N
Sbjct: 335 SMN 337


>gi|330448082|ref|ZP_08311730.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492273|dbj|GAA06227.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 627

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 119/291 (40%), Gaps = 36/291 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA++MAP   LA Q    +K   QN + + V  I G      + +AL+      AHI++G
Sbjct: 76  QAIVMAPTRELAIQVAAEMKTLGQNIKGLKVLEIYGGASIVDQMRALK----NGAHIVVG 131

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPRTLVLTSL 440
           T    +D I   +L L   DE H F + +  ++ +      V  +M   P     VL S 
Sbjct: 132 TPGRVKDLISRKQLHL---DEVHTFVLDEADEMLKMGFVDDVTWIMEQAPESAQRVLFS- 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE------- 493
                   T  P  ++ +   +    RID   E   V  S+ ++ +W+   +E       
Sbjct: 188 -------ATMPPIVKEIVDRFLRNPERIDVAGENRTV--SKVEQQFWVVKGVEKDEAMSR 238

Query: 494 --EKKESNFRSVVERFNSLHEHFTSSI-------AIIHGRMSDIDKESVMDSFKNGTCKL 544
             E ++++   V  R     E     +       A +HG +    +E  +D  K G   +
Sbjct: 239 LLETEDTDASIVFVRTRQDTERLADWLCSRGFKAAALHGDIPQSLRERTVDHIKRGVIDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           L+AT V+  G+DV   + +   +      + +H++ GR GR       ILL
Sbjct: 299 LVATDVVARGLDVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRTGKAILL 348


>gi|322514973|ref|ZP_08067985.1| ATP-dependent helicase RecQ [Actinobacillus ureae ATCC 25976]
 gi|322119026|gb|EFX91190.1| ATP-dependent helicase RecQ [Actinobacillus ureae ATCC 25976]
          Length = 602

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 113/281 (40%), Gaps = 55/281 (19%)

Query: 390 IQYYKLILVIVDEQH---RFGVQQRLKLTQ----KATAPHVLLM----TATPIPRTLVL- 437
           I   K+ L+ VDE H   ++G   R + T     + T P+V LM    TA P  R  +L 
Sbjct: 130 ISLCKISLIAVDEAHCVSQWGHDFRSEYTLLGNLRNTFPNVPLMALTATADPTTRHDILQ 189

Query: 438 --------TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                   T LG  D      +P  R  ++    P+ ++ + I +       GK     C
Sbjct: 190 HLRLTDPHTYLGSFD------RPNIRYTVQEKFKPMEQLAKFISK-----QHGKSGIVYC 238

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N R  VE           S+   H  MS   +E+V ++F+    ++++AT 
Sbjct: 239 ---------NSRKKVEEITEKLAARKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATI 289

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
              +GI+  +   ++     HF L +     +Q  GR GR +  S  +L Y P  +  ++
Sbjct: 290 AFGMGINKSNVRFVV-----HFDLPRSIESYYQETGRAGRDDLPSEAVLFYDP--ADYAW 342

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            +  +L+  E      + D+KQ K   I    +S   + L+
Sbjct: 343 LQKVLLEEPES----KQRDIKQHKLQAIGAFAESQTCRRLV 379


>gi|313109386|ref|ZP_07795348.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
 gi|310881850|gb|EFQ40444.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
          Length = 449

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 137/350 (39%), Gaps = 51/350 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT-------LVALIAMAAAVEAGG-Q 323
           +PT  Q  AI   L     K R L +     G+GKT       L  L      V A   +
Sbjct: 23  TPTPIQAQAIPPAL-----KGRDL-LAAAQTGTGKTAGFALPLLQRLTLEGPQVAANSVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHII 379
           A+++ P   LA+Q +  ++ Y Q+  +   +  G +   PQ  + RK ++        I+
Sbjct: 77  ALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVD--------IL 128

Query: 380 IGTHALF-----QDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAPHVLLMTATPI 431
           + T         Q+++++ +L  +++DE  R    G  + L            L  A P 
Sbjct: 129 VATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDE----------LFAALPR 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  +   +   R P+   + P N   + + +  V + + +KA   C  
Sbjct: 179 KRQTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHL 238

Query: 492 IEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++  +       +  R  VE    L +    +   IHG      +   +  FK G   LL
Sbjct: 239 LQANRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +AT V   G+D+ +  +++  +        +H++ GR GR       + L
Sbjct: 299 VATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRI-GRTGRAGASGQAVSL 347


>gi|295702900|ref|YP_003595975.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294800559|gb|ADF37625.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 481

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 131/321 (40%), Gaps = 36/321 (11%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  +    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCELVNWEENKPQALVLTPTRELAAQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFAKQKVELKQ----KTHIVVGTPGRVLDHIEKETLALEKIRYLVIDEADEMLN 160

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
              + Q   + Q   +  V ++ +  +P           DI +++ K   +KP+  V I 
Sbjct: 161 MGFIDQVEAIIQHLPSERVTMLFSATLPE----------DIEELSRKYM-KKPVD-VEIK 208

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS--- 517
            N +        V+    ++ + +   +   +  +    F    E+ N+L +        
Sbjct: 209 ANGLTTSTIDHSVISVGNERKFELLKDVTTVENPDSCIIFCRTQEQVNTLLDDLDDLGYP 268

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              IHG M   D+  VM+ FK G  + L+AT V   GID+ + + +I  +      + +H
Sbjct: 269 CDKIHGAMVQEDRFEVMNDFKKGKFRYLVATDVAARGIDIDNITHVINYDLPLEKESYVH 328

Query: 578 QLRGRVGRGEEISSCILLYHP 598
           +  GR GR  +    I    P
Sbjct: 329 RT-GRTGRAGKKGKAITFVTP 348


>gi|229528359|ref|ZP_04417750.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229334721|gb|EEO00207.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
          Length = 422

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 133/337 (39%), Gaps = 41/337 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQG-DVGSGKTLV-ALIAMAAAVEAGGQ------ 323
           +PT  Q+ A+  +LQ          +L G   G+GKT    L  +   +E   Q      
Sbjct: 28  NPTPIQQQAVPHVLQGKD-------VLAGAQTGTGKTAAFGLPLIQRFIEQPWQRETNSK 80

Query: 324 ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I
Sbjct: 81  EIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHL----RGGVDILI 136

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D      L L     +++DE  R      +   Q+      +L   +P+ +TL
Sbjct: 137 ATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR------VLRRLSPLRQTL 190

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             ++  D  I  +  +   R PI+  + P N   E ++++   + + +K   +   I  K
Sbjct: 191 FFSATFDSKIKAVAYRIM-RDPIEVQVTPSNSTAETVQQIVYPVDKKRKRELLSYLIGSK 249

Query: 496 KESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                  F    +  ++L E           I+G  S   ++  +D FK G  + LIAT 
Sbjct: 250 NWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATD 309

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           V   G+D+     ++  +        +H++ GR GR 
Sbjct: 310 VAARGLDIAQLEQVVNYDMPFKAEDYVHRI-GRTGRA 345


>gi|303271803|ref|XP_003055263.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463237|gb|EEH60515.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 394

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 138/325 (42%), Gaps = 69/325 (21%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GK+ +  +A+   ++      QA++++P   LA Q  +          + V 
Sbjct: 62  IAQAQSGTGKSSMISLALCQMLDTSTREVQALVLSPTRELATQTEKVALALGNFMSVQVH 121

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        + + ++ HG  HI+ GT     D I+   L        IL   DE   
Sbjct: 122 ACIGGRSIG---EDIRKLDHG-VHIVSGTPGRVFDMIKRRNLRTRNIKTLILDEADEMLN 177

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G ++++    +   P   V+L++AT     L +T+                   K +  
Sbjct: 178 KGFKEQIYDVYRYLPPETQVVLVSATLPVEVLEMTT-------------------KFMTD 218

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL------------- 510
           PI RI  +++R ++ L EG K +++     EK+E  F ++ + +++L             
Sbjct: 219 PI-RI--LVKRDELTL-EGIKQFFVAV---EKEEWKFDTLCDLYDTLTITQAVIFCNTKR 271

Query: 511 ----------HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
                       +FT  ++ +HG M   +++++M  F+ GT ++LI T V   GIDV   
Sbjct: 272 KVDWLTEKMRANNFT--VSAMHGDMPQKERDAIMGEFRGGTTRVLITTDVWARGIDVQQV 329

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGR 585
           S++I  +  +     +H++ GR GR
Sbjct: 330 SLVINYDLPNNRENYIHRI-GRSGR 353


>gi|225871066|ref|YP_002747013.1| primosomal protein N' [Streptococcus equi subsp. equi 4047]
 gi|225700470|emb|CAW94892.1| putative primosomal protein N' [Streptococcus equi subsp. equi
           4047]
          Length = 794

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +A  +E G  A+++ P I +  Q    FI ++ +     V I+
Sbjct: 281 LLEGITGSGKTEVYLHVIAHVLEQGKTAIVLVPEISLTPQMTSRFISRFGRQ----VAIM 336

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              +    +    ++I  GQA +++G  +     ++   +  +I+DE+H    +Q
Sbjct: 337 HSGLSDGEKFDEWQKIKTGQARVVVGARSAIFSPLE--NIGAIIIDEEHEATYKQ 389


>gi|145476155|ref|XP_001424100.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391163|emb|CAK56702.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1238

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG  +   ++ +M +F++G  +LL AT +   G+DV D +++I  +   +    +H++ 
Sbjct: 376 LHGDKTQPQRDEIMKAFRSGYTRLLCATDLASRGLDVTDITVVINYDFPKYFDDYIHRI- 434

Query: 581 GRVGRGE 587
           GR GRGE
Sbjct: 435 GRTGRGE 441


>gi|114777669|ref|ZP_01452629.1| putative ATP-dependent RNA helicase [Mariprofundus ferrooxydans
           PV-1]
 gi|114551885|gb|EAU54419.1| putative ATP-dependent RNA helicase [Mariprofundus ferrooxydans
           PV-1]
          Length = 415

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 7/167 (4%)

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL  ++  + +I K+       + I+  + P +RI + +    + +    K +++   +
Sbjct: 181 QTLFFSATINDEIKKLAYSQVKSEAIRIQVSPEDRIAKNVSHFVMFVEMDDKRFFLDRFL 240

Query: 493 EEKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           ++  E         R   ER              IHG     ++ + M +F+ G C++LI
Sbjct: 241 QDHPEGKVIVFVRTRVRAERVVRAMARAGFDTVSIHGDKDQDERATAMQAFRKGDCRVLI 300

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           AT V   GIDV D   +I  +        +H++ GR GRG ++   I
Sbjct: 301 ATDVSARGIDVPDVDFVINYDLPEKPENYVHRV-GRTGRGMKLGDAI 346


>gi|113954719|ref|YP_730508.1| DNA and RNA helicase [Synechococcus sp. CC9311]
 gi|113882070|gb|ABI47028.1| DNA and RNA helicase [Synechococcus sp. CC9311]
          Length = 426

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 66/312 (21%), Positives = 141/312 (45%), Gaps = 32/312 (10%)

Query: 303 GSGKTLVALIAMAAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           G+GKT    + M   +  G +       A+++ P   LA Q    +++Y++  Q+  +++
Sbjct: 62  GTGKTAGFTLPMLERLNHGARPGRLQIRALVLTPTRELAAQVLASVREYSKYLQLTSDVV 121

Query: 356 TGNM---PQAHR-RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR-----F 406
            G +   PQ  R +K ++ +      ++     L Q ++++ ++  +++DE  R     F
Sbjct: 122 FGGVKINPQIQRLQKGVDVLVATPGRLL---DLLQQGAVRFDRVEFLVLDEADRMLDMGF 178

Query: 407 GVQQRLKLTQKATAPHVLLMTAT-PIPRTLVLTSLGDIDISKITEKPAGR--KPIKTVII 463
               R  +++       L+ +AT   P   + T L D  + +I   PA +  + ++ V+ 
Sbjct: 179 IHDIRRVISRLPDRRQTLMFSATFSAPIRKLATGLLDHPV-QIQVAPANQTVRSVEQVVH 237

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
           P +   +V + L  ++  G+   W+   +  + +     VV+R +   +   +  A IHG
Sbjct: 238 PCDMARKV-DLLSHLIRSGE---WLQVLVFSRTKHGANRVVDRLS--QQGLLA--AAIHG 289

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
             S   +   +  FK+G+ ++L+AT +   GID+     ++  +  +     +H++ GR 
Sbjct: 290 NKSQGARTRALQGFKDGSVRVLVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRI-GRT 348

Query: 584 GRGEEISSCILL 595
           GR  E    I L
Sbjct: 349 GRAGETGHAISL 360


>gi|296132723|ref|YP_003639970.1| single-stranded-DNA-specific exonuclease RecJ [Thermincola sp. JR]
 gi|296031301|gb|ADG82069.1| single-stranded-DNA-specific exonuclease RecJ [Thermincola potens JR]
          Length = 1233

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 70/345 (20%), Positives = 130/345 (37%), Gaps = 32/345 (9%)

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV-ALIAMAAAVEAGGQAVIMA 328
            P+   +SQ +A    LQ + + N  L I     G GK+ V   +A+  A++     +I+ 
Sbjct: 748  PYPYRESQLAA----LQSLLEGNNTLAIF--GTGRGKSAVFQSMAVYKAIKEDALTIIVY 801

Query: 329  PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            P+  L    YE +        + +    G +    R      +  G   I++ T      
Sbjct: 802  PLRALVNDQYEAMLNKLSALGMRIYKGNGTLSAGERAMLFAVLEAGDIDILLTTPEFLSF 861

Query: 389  SIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS---- 439
             ++       K+ L +VDE H   +             H+      P+   +  T+    
Sbjct: 862  HMEKILAMPKKIGLFVVDESHHISMSSLSHRPAYKRISHIAEGLGRPLTLAVTATANDEV 921

Query: 440  ----LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
                +  + I+++   P  RK ++  +I    I++    +K VL+ G K           
Sbjct: 922  AQEIIAALAINQVVIDPYVRKNLQ--LIDKRGIEDKSAYIKQVLATGGKTIIYV------ 973

Query: 496  KESNFRSV--VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              S  ++V         + H    IA  H  + +  + ++   FK G    ++AT+    
Sbjct: 974  -NSRLKAVELALMLREANPHLADKIAYYHAGLKNEHRHTIEKMFKEGELLAIVATSAFGE 1032

Query: 554  GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            GID+ D   +++ +  +F   + +Q  GR GR    S   LL  P
Sbjct: 1033 GIDIPDVRHVVLYHL-NFNFTEFNQQSGRAGRDGGTSHIHLLCGP 1076


>gi|293409738|ref|ZP_06653314.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470206|gb|EFF12690.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 457

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|209694846|ref|YP_002262774.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida
           LFI1238]
 gi|208008797|emb|CAQ78997.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida
           LFI1238]
          Length = 434

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 125/317 (39%), Gaps = 47/317 (14%)

Query: 297 ILQGDVGSGKTLV--------ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           +     G+GKT           L    +A     +A+I+AP   LA+Q    I  YT+ T
Sbjct: 42  LANAQTGTGKTAAFALPVIQRLLDTKKSATRRSARALILAPTRELAEQIAVNIISYTKYT 101

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQ 403
            + V  + G    + + +AL+        I++ T    Q+ I+        L  ++ DE 
Sbjct: 102 SLKVTAVFGGKKMSSQERALD----PGVDILVATPGRLQEHIEEGNVSIANLEFLVFDEA 157

Query: 404 HR-----FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            R     F    R  + +  +AP ++L +AT   +   L S    DI         RKP 
Sbjct: 158 DRMLDMGFVNAIRNIMMEVNSAPQIMLFSATSSAQMNKLAS----DIL--------RKPK 205

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV------ERFNSLHE 512
           +  +   N     I  +   + E +K   +   I  K   N++ V+      E  N++ +
Sbjct: 206 RISVDRENMTATTISHVVYPVDEERKTELLSELIGRK---NWQQVLVFVNYKETANNIVK 262

Query: 513 HFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                     I HG  +   +   ++ FK G  ++++AT V   G+D+ D   +I  +  
Sbjct: 263 ELKLDGIKAVICHGDKAQSARRRALEEFKEGKARVMVATDVAARGLDIADLPHVINYDMP 322

Query: 570 HFGLAQLHQLRGRVGRG 586
                 +H++ GR GR 
Sbjct: 323 FLAEDYVHRI-GRTGRA 338


>gi|171696192|ref|XP_001913020.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948338|emb|CAP60502.1| unnamed protein product [Podospora anserina S mat+]
          Length = 715

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 127/327 (38%), Gaps = 47/327 (14%)

Query: 302 VGSGKTLVALIAMAAAVEA-----------GGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            GSGKT   L+ +   +             G  A+I+AP   L QQ     +K+      
Sbjct: 327 TGSGKTAAFLLPLLVYISELPPLNDVNKNDGPYALILAPTRELVQQIENEARKFATPLGF 386

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR 405
            V  I G      +  AL       A II+ T     D ++     + +   +I+DE  R
Sbjct: 387 TVVSIVGGHSLEEQAYAL----RNGAEIIVATPGRLVDCLERRLLVFTQCCYIIMDEADR 442

Query: 406 F---GVQQRLKL-------------TQKATAPHVL---LMTATPIPRTLVLTSLGDIDIS 446
               G ++ L               T++A  P ++   L       +T++ T+     + 
Sbjct: 443 MIDQGFEEPLTKILDALPVTNEKPDTEEAENPQLMKKYLGGKDRYRQTMMYTATMPPLVE 502

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-------N 499
           +I +K   R  I T+      +D V +R++ +  E K+   +   +   +         N
Sbjct: 503 RIAKKYLRRPAIVTIGNAGEAVDTVEQRVEFIAGEDKRKNRLREILNSGQFKPPIIVFVN 562

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   E      + +  S   +HG  +   +E+ + S +NG   +L+AT +   GIDV D
Sbjct: 563 IKRNCEMVAKDIKSWGFSTTTLHGSKTQEQREASLASVRNGQSSILVATDLAGRGIDVPD 622

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRG 586
            S+++  N      +  H++ GR GR 
Sbjct: 623 VSLVVNFNMPSSIESYTHRI-GRTGRA 648


>gi|161507730|ref|YP_001577691.1| primosomal replication factor [Lactobacillus helveticus DPC 4571]
 gi|160348719|gb|ABX27393.1| Primosomal replication factor [Lactobacillus helveticus DPC 4571]
          Length = 799

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 68/143 (47%), Gaps = 7/143 (4%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +P +    Q++A+  I + + Q      +L+G  GSGKT V L A+  A+  G  A+++ 
Sbjct: 259 VPVTLNDEQQTALNQINKAIDQHKAETFLLEGITGSGKTEVYLHAIGQALAQGRNALMLV 318

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
           P   L  Q  + +K    +    V ++   + +  +     RI  G+  +++G   A+F 
Sbjct: 319 PEISLTPQMVKQVKARFGDK---VAVLHSALSEGEKYDEWRRIRRGEIQVVVGARSAVF- 374

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
             +    + L+++DE+H    +Q
Sbjct: 375 --VPLDNIGLIVIDEEHESSYKQ 395


>gi|94500946|ref|ZP_01307471.1| putative ATP-dependent RNA helicase DbpA [Oceanobacter sp. RED65]
 gi|94426886|gb|EAT11869.1| putative ATP-dependent RNA helicase DbpA [Oceanobacter sp. RED65]
          Length = 466

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 137/321 (42%), Gaps = 39/321 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I Q   GSGKT    + +   ++      Q +++ P   LA Q  + I++  +    I V
Sbjct: 49  IGQAKTGSGKTAAFALGLLHHLDVKRFRVQHLVLCPTRELADQVAKEIRQLARAIHNIKV 108

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G MP   +  +LE   HG AHI++GT    ++ I+   L L      ++DE  R  
Sbjct: 109 LTLCGGMPFGPQVGSLE---HG-AHIVVGTPGRIEEHIRKNNLPLKDITGFVLDEADRML 164

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             G Q  L+           ++ A P  R TL+ ++    +I K+       KP++ V +
Sbjct: 165 DMGFQDSLES----------IVNALPKQRQTLLFSATYPENIEKLAAW-VTNKPVR-VEV 212

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQI--EEKKESNF------RSVVERFNSLHEHFT 515
             + +   I++L   L + K+       +  +EK ES+       R   E  + L     
Sbjct: 213 QESDVHSQIKQLFYRLQDNKQRMTALSLLLKKEKPESSIVFCNTKREAQEIADELRSQGF 272

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           S++A+ HG +    ++  +  F N +  +++AT V   G+D+     +   +        
Sbjct: 273 SAVAL-HGDLEQRQRDQTLVRFANKSASIMVATDVAARGLDIESVDAVFNYHLARDPEVH 331

Query: 576 LHQLRGRVGRGEEISSCILLY 596
           +H++ GR GRG++       Y
Sbjct: 332 VHRV-GRTGRGDKKGKAFSFY 351


>gi|116053198|ref|YP_793519.1| primosome assembly protein PriA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588419|gb|ABJ14434.1| primosomal protein N' [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 739

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 21/178 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   + AG QA+++ P I +  Q    F +++     ++   +
Sbjct: 225 LLAGVTGSGKTEVYLQLIRETLAAGRQALVLIPEINLGPQTLARFERRFNARIALLHSAL 284

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           T       R  A      G+A I+IGT  ALF       +  L+IVDE+H    +Q+  L
Sbjct: 285 TDR----ERLDAWLAARDGEADIVIGTRSALF---TPLKRPGLIIVDEEHDASYKQQDGL 337

Query: 415 TQKA-----------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              A             P +LL +ATP   +L     G   + ++T++  G  P K +
Sbjct: 338 RYHARDLALVRARLENVP-ILLGSATPALESLHNAQAGRYGLLRLTQRAGGAHPPKFI 394


>gi|327462431|gb|EGF08756.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1057]
          Length = 447

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 151/357 (42%), Gaps = 42/357 (11%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAV 318
           Q+ LR++ F   T  QE  I  +L       R L + +   GSGKT   L+ +  M    
Sbjct: 13  QEALRDLNFFEATPVQEKLIPVVLS-----GRDL-VGESKTGSGKTHTFLLPIFQMLDEE 66

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN-MPQAHRRKALERIAHGQAH 377
               QAVI AP   LA Q Y+  ++    ++   EI   N +    + + + ++   Q H
Sbjct: 67  ADSVQAVITAPSRELAAQIYQAARQLASFSE--KEIRGANYVGGTDKARQIGKLESSQPH 124

Query: 378 IIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I+IGT     D ++   L +      +VDE         L +   AT   +    A  +P
Sbjct: 125 IVIGTPGRIYDLVESGDLAIHKAKTFVVDE-----ADMTLDMGFLATVDKI----AGRLP 175

Query: 433 RTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGK----K 484
           + L           K+  +P  +K    P+   I     I + IE   ++ ++G+    +
Sbjct: 176 KDLQFLVFSATIPQKL--QPFLKKYLSNPVIEQIKTKTVIADTIENW-LLSTKGRDKNAQ 232

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGT 541
            Y I   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN  
Sbjct: 233 IYQISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLD 292

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            + ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|323497187|ref|ZP_08102207.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323317762|gb|EGA70753.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 419

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 138/340 (40%), Gaps = 47/340 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQG-DVGSGKTLV-------ALIAMAAAVEAGG- 322
           +PT+ Q+ +I  IL           +L G   G+GKT          LI   +  +  G 
Sbjct: 25  TPTQVQQQSIPHILLGKD-------VLAGAQTGTGKTAAFGLPIIQQLIQSESVRDPQGN 77

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHII 379
             +A+++ P   LAQQ Y+ + +Y ++T + IV    G       R       H    I+
Sbjct: 78  DVRALVLVPTRELAQQVYDNLVQYAESTPLKIVTAYGGTSINVQTRNL-----HQGCDIL 132

Query: 380 IGTHA-----LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIP 432
           I T       +F  ++   K   +++DE  R        +      P +  +L    P  
Sbjct: 133 IVTPGRLIDHMFCKNVSLAKTEYLVLDEADR--------MLDMGFMPDIQRILKRFNPER 184

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL  ++  D  I  I  K   + PI+  + P N   E ++++   + + +KA  +   I
Sbjct: 185 QTLFFSATFDKRIKNIAYK-LQKDPIEIQVSPSNSTAETVKQMVYPVDKKRKAELLAYLI 243

Query: 493 EEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             +       F    +  ++L +         A I+G  S   ++  +D FK+G  + LI
Sbjct: 244 GSRNWQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALI 303

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           AT V   G+D+     ++  +  +     +H++ GR GR 
Sbjct: 304 ATDVAARGLDINQLEQVVNFDMPYKAEDYVHRI-GRTGRA 342


>gi|300863669|ref|ZP_07108605.1| primosome assembly protein PriA [Oscillatoria sp. PCC 6506]
 gi|300338339|emb|CBN53751.1| primosome assembly protein PriA [Oscillatoria sp. PCC 6506]
          Length = 881

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 27/215 (12%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           ++P + T  Q  A+  ++ ++S  N++L  L G  GSGKT V L A+A  +E+G   +++
Sbjct: 307 DVPKALTPYQIEALA-VINNLSGFNQVL--LHGVTGSGKTEVYLQAIAPILESGQSVLVL 363

Query: 328 AP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P IG+  Q    F  ++       V +    + +  R      +  G   I+IGT +  
Sbjct: 364 VPEIGLTPQLTDRFRARFGDQ----VCVYHSALSEGERFDTWRYMTQGIPQIVIGTRSAI 419

Query: 387 QDSIQYYKLILVIVDEQH--RFGVQQRLKLTQKATAPH---------VLLMTATPIPRTL 435
              + +  L L+I+DE+H   F   +R  L    T            ++L +ATP   T 
Sbjct: 420 FAPLPH--LGLIILDEEHDSSFKQNEREPLYHARTVAKWRAELEDCPLILGSATPSLETW 477

Query: 436 VLT-----SLGDIDISKITEKPAGRKPIKTVIIPI 465
           V T     S+ D  +S ++ +   + PI    +PI
Sbjct: 478 VETRRQKSSIKDY-LSSLSNQENPQLPITNYPLPI 511


>gi|288554155|ref|YP_003426090.1| ComF operon protein 1 [Bacillus pseudofirmus OF4]
 gi|288545315|gb|ADC49198.1| comF operon protein 1 [Bacillus pseudofirmus OF4]
          Length = 375

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 144/328 (43%), Gaps = 38/328 (11%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +QE A   +++ + +K+ +L  L    G+GKT +    + AA+  G + +I  P      
Sbjct: 45  AQEKASNSVIKAVEEKSSLL--LWAVCGAGKTEMLFKGIEAAINKGERVLIATP------ 96

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
              + +K+ +   + +      ++P A       +  H  A ++I T        Q + +
Sbjct: 97  -RVDVVKELSPRLRTVFP----SIPIASLYGG-SKDQHINAQLVIATTHQVMRYFQSFDV 150

Query: 396 ILVIVDEQHRF------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
             VIVDE   F       +Q  +K  +K  +  ++ +TATP   T  +  +  ++I  + 
Sbjct: 151 --VIVDEVDAFPFSYDKSLQYAIKQARKPQS-SLIYLTATP---TSQIRKIPKLEIVYVP 204

Query: 450 EKPAGRK-PIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-FRSVVER 506
            +  G   P+ T     N R     ++L  V+ +     W+  ++E KK +  F   V+ 
Sbjct: 205 RRYHGFSLPVPTFTWCGNWRTRLTKKKLPPVVMK-----WLQERLEAKKPTLLFLPSVDV 259

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDK--ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +  H   S +I H  +   DK     +  F+N    LL+ TT++E GI + +  + +
Sbjct: 260 LKEI-SHLLGSQSIKHEAVYAADKARHEKVARFRNEEYSLLLTTTILERGITISNLDVAV 318

Query: 565 IENAEH-FGLAQLHQLRGRVGRGEEISS 591
           +   +H F  + L Q+ GRVGR  ++ +
Sbjct: 319 LGAEDHVFTESALVQIAGRVGRSAKMPT 346


>gi|268318827|ref|YP_003292483.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
           FI9785]
 gi|262397202|emb|CAX66216.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
           FI9785]
          Length = 484

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 136/323 (42%), Gaps = 40/323 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + +   ++      QA+I+ P   LA Q  E + +  ++ +  V+
Sbjct: 42  IGQAQTGTGKTAAFGLPILQNLDKQHDSIQAIIIEPTRELAIQTQEELFRLGRDEKARVQ 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
           ++ G      + +AL++       I++GT     D     +I   K+  +++DE      
Sbjct: 102 VVYGGADIRRQIRALKQTPA----ILVGTPGRLLDHLKRGTIDISKIKTIVLDEADEMLD 157

Query: 407 -GVQQRLK-LTQKATAPHVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIKTV 461
            G  Q ++ + + A++ H  L+ +  +P+ ++      + D +I KI  K          
Sbjct: 158 MGFIQDIESILKYASSKHQTLLFSATMPKPILRIGEKFMNDPEIVKIKGKE--------- 208

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS-- 516
            +  N ID+   R K    E +K   +C  I+ +       F     R + L     +  
Sbjct: 209 -LTANLIDQYFVRAK----ENEKFDILCRLIDVQNPDLAVIFGRTKRRVDELTRGLQARG 263

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + A IHG +S   + SV+  F+ G   +L+AT V   G+D+   S +   +      + 
Sbjct: 264 YNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDISGVSHVYNYDIPQDPDSY 323

Query: 576 LHQLRGRVGRGEEISSCILLYHP 598
           +H++ GR GR  +    +    P
Sbjct: 324 VHRI-GRTGRAGQNGMSVTFVTP 345


>gi|260947802|ref|XP_002618198.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720]
 gi|238848070|gb|EEQ37534.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720]
          Length = 692

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 117/287 (40%), Gaps = 49/287 (17%)

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +IMAP   L  Q +E  KKY   + +   +  G +    + + L+R       +++    
Sbjct: 311 LIMAPTRELVSQIFEEAKKYCYRSWVRPAVAYGGVDIGQQIRTLQR----GCDLLVAAPG 366

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRF-------------------GVQQRLKLTQKATA 420
              D ++  ++ L     +++DE  R                     VQ R  L   AT 
Sbjct: 367 RLTDLLERGRVSLCNVKYLVLDEADRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFSATF 426

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDIS--KITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           P  + M A    +  V  S+G +  +   IT+        K +++  +    VI  L   
Sbjct: 427 PRNIQMLARDFLKDYVFLSVGRVGSTSANITQ--------KVLLVEDDEKRSVILDLLSA 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
              G    +     E K+ +++ +     + L++    + A IHG  +  ++E  + +FK
Sbjct: 479 ADNGLTIVF----TETKRMADYLA-----DFLYDQGFPATA-IHGNRTQYEREKALAAFK 528

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           NGT  +L+AT V   G+D+ + S +I  +        +H++ GR GR
Sbjct: 529 NGTAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRI-GRTGR 574


>gi|255654878|ref|ZP_05400287.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-23m63]
 gi|296449624|ref|ZP_06891399.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP08]
 gi|296878056|ref|ZP_06902072.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP07]
 gi|296261522|gb|EFH08342.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP08]
 gi|296430956|gb|EFH16787.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP07]
          Length = 375

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 139/323 (43%), Gaps = 45/323 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I +   G+GKTL  L+ +   +       Q +I++P   LA Q  E   K  ++  + + 
Sbjct: 48  IAEAQTGTGKTLAFLLPIFENISLDINDIQVLILSPTRELAIQITEEAMKLKESKDVSIL 107

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGV 408
              G      + K L+    G  H+II T     D     +I   KL   ++DE      
Sbjct: 108 AAYGGKDIGSQIKKLK----GNIHMIIATPGRLLDHLNRKTIDLSKLKTFVLDE-----A 158

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            Q L +  K     +L  T+    +TL  ++     I+   +K A R     V++ I + 
Sbjct: 159 DQMLLMGFKNEVEAILKETSNK-KQTLCFSAT----INSQVKKLAYRYTKNPVVVSIQKE 213

Query: 469 DEVIERLK---VVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFT---SS 517
           +  +  +K   V  ++ KK   +C  ++E  ++ F +++      R ++L E       +
Sbjct: 214 EITLNNIKQEVVETTDRKKLDALCKVLDE--DNPFMAIIFCRTKRRVDNLEEALAIRGYN 271

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGL 573
              +H  ++   +E +M SF+N   + LIAT V   G+D+   S I    + E  E +  
Sbjct: 272 CQKLHSDIAQSKRERIMKSFRNLDIQYLIATDVASRGLDISGVSHIYNYDLPETPEDY-- 329

Query: 574 AQLHQLRGRVGR-GEEISSCILL 595
             +H++ GR GR GEE  +C  +
Sbjct: 330 --IHRI-GRTGRAGEEGYTCAFI 349


>gi|219115677|ref|XP_002178634.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410369|gb|EEC50299.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 417

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 135/354 (38%), Gaps = 86/354 (24%)

Query: 301 DVGSGKTLV-ALIAMAAAVEAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL  AL A++A  E          + +++AP   LA Q  E +K++     I  
Sbjct: 31  ETGSGKTLAFALPALSAMSEDTSTRKRRLPRMLVLAPTRELAMQSDEVLKEFGAVVSIKS 90

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD----------- 401
            ++ G +P+  ++  L++        ++ T    +D IQ     L  VD           
Sbjct: 91  LVVYGGVPKYEQKNELKK----GVDCVVATPGRIKDLIQERACDLSAVDYLVLDEADRML 146

Query: 402 -----EQHRFGV-------QQRLKLTQKATAPHVLLMTA-----TPIP-----RTLVLTS 439
                E  RF +       Q R      AT P  +   A      PI       ++V ++
Sbjct: 147 DMGFEEDVRFIISNCKSKEQGRQTAMFSATWPAAIQKIAMDYMVDPIRVYVGFESIVGSN 206

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW--ICPQIEEKKE 497
            G +D S    K               R+ +++E   VV    + A    I  ++  K++
Sbjct: 207 GGGVDDSLSANK---------------RVTQIVE---VVEDRARDARLRDILRKVHMKRD 248

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +       ++   ER              IHG  + + + + +  FK+G+C LLIAT V 
Sbjct: 249 NRVLVFGLYKKEAERLEYSLRKDGWDCCSIHGNKTQVARTAALAQFKDGSCPLLIATDVA 308

Query: 552 EVGIDVVDASIII-------IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             G+D+ +   +I       IE+        +H++ GR GR  +       + P
Sbjct: 309 ARGLDIPNVEAVINFTFPLTIED-------YVHRI-GRTGRAGKTGVSYTFFQP 354


>gi|255944863|ref|XP_002563199.1| Pc20g06740 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587934|emb|CAP86003.1| Pc20g06740 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 396

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 130/301 (43%), Gaps = 62/301 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I+    ++      QA+I+AP   LAQQ  + +        +   
Sbjct: 64  IAQAQSGTGKTATFSISALQKIDPEVKACQALILAPTRELAQQIQKVVVAIGDFMSLDCH 123

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G     + R+ +  +  G   +++GT     D IQ   L        IL   DE   
Sbjct: 124 ACIGG---TNVREDMNALRAG-PQVVVGTPGRVHDMIQRRVLSTTAMKLFILDEADEMLS 179

Query: 406 FGVQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G  +++    +L  ++T   V L++AT +P+          D+ ++T K   R P++ +
Sbjct: 180 RGFTEQIYDIFQLLPQST--QVTLLSAT-MPQ----------DVLEVTTKFM-RDPVRIL 225

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------R 506
           +          ++ ++ L EG K ++I  + EE K      + E               +
Sbjct: 226 V----------KKQELTL-EGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 274

Query: 507 FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L +  T+   +++ +HG M    ++ +M  F++G+ ++LIAT ++  GIDV   S++
Sbjct: 275 VDWLTDKLTARDFTVSAMHGDMEQGQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 334

Query: 564 I 564
           I
Sbjct: 335 I 335


>gi|160937140|ref|ZP_02084503.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440041|gb|EDP17789.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
           BAA-613]
          Length = 569

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 9/70 (12%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQL 576
           +HG +  + ++ VMDSF+NG   +L+AT V   GIDV D   +    I ++ E++    +
Sbjct: 273 LHGDLKQVQRDRVMDSFRNGRTDILVATDVAARGIDVGDVEAVFNYDIPQDDEYY----V 328

Query: 577 HQLRGRVGRG 586
           H++ GR GR 
Sbjct: 329 HRI-GRTGRA 337


>gi|156977147|ref|YP_001448053.1| hypothetical protein VIBHAR_05933 [Vibrio harveyi ATCC BAA-1116]
 gi|156528741|gb|ABU73826.1| hypothetical protein VIBHAR_05933 [Vibrio harveyi ATCC BAA-1116]
          Length = 421

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 156/376 (41%), Gaps = 56/376 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----AGGQAVI 326
           +PT  QE +I  +L+       +L   Q   G+GKT    + +  +V+        QA+I
Sbjct: 29  TPTPVQEKSIPPVLEGKD----LLAAAQ--TGTGKTAAFGLPIIQSVQQKKRNGAPQALI 82

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-- 384
           + P   LAQQ  + + +Y  NT + +  + G      ++K LE      A I+I T    
Sbjct: 83  LVPTRELAQQVMDNLTQYAANTDLKIVCVYGGTSIGVQKKKLEE----GADILIATPGRL 138

Query: 385 ---LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTS 439
              LF  ++   K  ++++DE  R        +      P +  +L       +T++ ++
Sbjct: 139 LDHLFNGNVIIAKTGILVLDEADR--------MLDMGFWPDLQRILRRLPQDKQTMLFSA 190

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK----AYWICPQIEEK 495
             +  I  I  K     P++  + P N   E ++++   + + +K    AY I  +    
Sbjct: 191 TFEKRIKTIAYKLMD-SPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSR---- 245

Query: 496 KESNFRSVV--ERFNSLHEHFTSSIAI-------IHGRMSDIDKESVMDSFKNGTCKLLI 546
              N++ V+   +     +     + +       I+G  S   ++  +D FK G  + LI
Sbjct: 246 ---NWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKAGKVRALI 302

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ +   ++  +        +H++ GR GR  +    + L    +S++   
Sbjct: 303 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRI-GRTGRARKSGLAVSL----MSRDEEY 357

Query: 607 RLSVLKNTEDGFLIAE 622
            L+ ++N  D  L  E
Sbjct: 358 LLTAIENLLDQRLPQE 373


>gi|71030866|ref|XP_765075.1| DNA helicase [Theileria parva strain Muguga]
 gi|68352031|gb|EAN32792.1| DNA helicase, putative [Theileria parva]
          Length = 998

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 9/80 (11%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LH 577
           H ++S I + +V + + N   K+++AT    +GID  D   ++     HF +++      
Sbjct: 461 HAQLSTIVRTNVYNDWINDRIKVIVATIAFGMGIDKKDVRFVV-----HFSVSKSIENYF 515

Query: 578 QLRGRVGRGEEISSCILLYH 597
           Q  GR GR ++ S+CIL+Y+
Sbjct: 516 QESGRAGRDQKKSTCILMYN 535


>gi|330804914|ref|XP_003290434.1| hypothetical protein DICPUDRAFT_37328 [Dictyostelium purpureum]
 gi|325079445|gb|EGC33045.1| hypothetical protein DICPUDRAFT_37328 [Dictyostelium purpureum]
          Length = 600

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 153/379 (40%), Gaps = 64/379 (16%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+ M   + A        G   +IM+P   LA Q +   KK+T+N  + V 
Sbjct: 73  TGSGKTLAFLLPMFRHILAQPKTVPGDGMIGLIMSPTRELALQIFSECKKFTKNLGLRVA 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            I G    + +   L+R     A I++ T     D +           ++  +++DE  R
Sbjct: 133 CIYGGASISEQIADLKR----GADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADR 188

Query: 406 -----FGVQQRLKLTQKATAPHVLLMTATPIPRT-----------LVLTSLGDIDISKIT 449
                FG Q    +         ++ +AT  P+            L + + G   +S   
Sbjct: 189 MFDMGFGPQIMCVIDNIRPDRQTIMFSATFPPKVENAAKKILTKPLEIIAGGRSIVSSDI 248

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           ++    +P +T      R   +IE L +   +G+    I    +E  ++ FR +    +S
Sbjct: 249 DQHVEVRPSET------RFRRLIELLSLWYHKGQ--ILIFTNRQETTDNLFRQLA---SS 297

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            ++  +     +HG     D++  +  FKN    +LIAT +   G+D+ D ++++  +  
Sbjct: 298 QYQCLS-----LHGSKDQTDRDETITDFKNKVKTILIATPLASRGLDIKDLNLVVNFDCP 352

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK--- 626
                 +H++ GR GR     +      P   + S    S++K  E       ++LK   
Sbjct: 353 DHLEDYVHRV-GRTGRAGNKGTAYTFITPEEERYSP---SIIKALEQSGSKVPDELKKLN 408

Query: 627 -----QRKEGEILGIKQSG 640
                +RKEG+ + +  +G
Sbjct: 409 ESYDRKRKEGKEVLLAPTG 427


>gi|325293690|ref|YP_004279554.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
 gi|325061543|gb|ADY65234.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
          Length = 500

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 122/294 (41%), Gaps = 36/294 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           + +I+AP   L  Q  E ++ + + T + +  + G      ++  LE+       +++ T
Sbjct: 85  RTLILAPTRELVNQIGENLRSFVKKTPLRINQVVGGASINKQQLQLEK----GTDVLVAT 140

Query: 383 HALFQD-----SIQYYKLILVIVDEQHR---FGVQQRL-KLTQKATAPHVLLMTATPIPR 433
                D     +I   K+  +++DE  +    G    L K+++   A    L+ +  +P+
Sbjct: 141 PGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISKMVPAKRQTLLFSATMPK 200

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI-DEVIERLKVVLSEGKKAYWICPQI 492
                ++ ++  + +T+      PIK  + P  +  D+V + +  V  +  K   +   +
Sbjct: 201 -----AISELASNFLTD------PIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKSL 249

Query: 493 EEKKESNFRSVV--------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            E  +   RS+V        E+     EH    +A IHG  S   +E  +  FK+G  K+
Sbjct: 250 NENPDG--RSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKV 307

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           L+AT V   GID+   + +   +      A +H++ GR  R       I    P
Sbjct: 308 LVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRI-GRTARAGRDGIAIAFCAP 360


>gi|312885453|ref|ZP_07745092.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311302033|gb|EFQ79063.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 450

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 136/315 (43%), Gaps = 37/315 (11%)

Query: 302 VGSGKT----LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIIT 356
            G+GKT    L  ++ +  A  +  +A+++AP   LA Q  E  K++ + T + IV +  
Sbjct: 49  TGTGKTAAYMLPIIMRLKYAQGSDARAIVIAPTRELALQIEENAKEFAKYTDLRIVSLYG 108

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-----F 406
           G  P+  +    E +  G   II+ T   F D      +   KL ++++DE  +     F
Sbjct: 109 GLGPKTQK----ELMDKG-VDIIVATPGRFMDVYLTGHMVTKKLEVLVLDEADKMMDMGF 163

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKTVIIP 464
             Q    L         LL +AT   +   L+S  L    + ++T +    + +  V+  
Sbjct: 164 MPQINRILEVVPRKRQNLLFSATMSDKIQELSSNFLEFPTVVEVTPQATPAQTVNQVLYH 223

Query: 465 INRIDEVIERLKVVLS---EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           +  +   I  LK +L    + KK    C +     E  ++ ++ +F          + ++
Sbjct: 224 VPNMKTKINLLKKLLDAPDDIKKLIIFC-KTRVAAEDVYKFLLRKFGE------KEVRVL 276

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           H       + + +++FKN   K+L+AT V   GIDV D S +I  +        +H++ G
Sbjct: 277 HANKGQNTRINAINAFKNDEVKILVATDVASRGIDVSDVSHVINFDVPVVYEDYVHRI-G 335

Query: 582 RVGR----GEEISSC 592
           R GR    GE I+ C
Sbjct: 336 RTGRAFQSGEAITFC 350


>gi|302696869|ref|XP_003038113.1| hypothetical protein SCHCODRAFT_63532 [Schizophyllum commune H4-8]
 gi|300111810|gb|EFJ03211.1| hypothetical protein SCHCODRAFT_63532 [Schizophyllum commune H4-8]
          Length = 396

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 135/316 (42%), Gaps = 51/316 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++  +++      QA++++P   LA Q    +        +   
Sbjct: 64  IAQAQSGTGKTATFSISILQSIDVTVRETQALVLSPTRELATQIQSVVLALGDYMNVQCH 123

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
              G        + LE   +GQ H++ GT     D     S++   + ++++DE      
Sbjct: 124 ACIGGTSVGEDIRKLE---YGQ-HVVSGTPGRVFDMIRRRSLRTRNIKMLVLDEADELLN 179

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V+L++AT +P           D+ ++T+K     PI+   I
Sbjct: 180 KGFKDQIYDVYRYLPPATQVVLLSAT-LP----------YDVLEMTQKFMT-DPIR---I 224

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K      +K  W    + +  ++          N R  V+        
Sbjct: 225 LVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMRQ 284

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAE 569
              +++ +HG M   +++++M  F+ GT ++LI T V   GIDV   S++I      N E
Sbjct: 285 SNFTVSSMHGEMVQKERDAIMAEFRAGTSRVLITTDVWARGIDVQQVSLVINYDLPANRE 344

Query: 570 HFGLAQLHQLRGRVGR 585
           ++    +H++ GR GR
Sbjct: 345 NY----IHRI-GRSGR 355


>gi|302685145|ref|XP_003032253.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
 gi|300105946|gb|EFI97350.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
          Length = 488

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 147/341 (43%), Gaps = 52/341 (15%)

Query: 302 VGSGKTL-VALIAM----AAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+  AL AM    A  + + G    A+++AP   LA Q  +   K+  N++I   
Sbjct: 107 TGSGKTISFALPAMLHINAQPLLSPGDGPIALVLAPTRELAVQIQQECTKFGSNSRIRNT 166

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            I G  P+  + + L+R       ++I T     D ++  K  L     +++DE  R   
Sbjct: 167 AIYGGAPKGPQIRDLQR----GVEVVIATPGRLIDMLETGKTNLRRVTYLVMDEADRMLD 222

Query: 406 --FGVQQRLKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDIS---KITE 450
             F  Q R  ++Q           AT P  +   A    +  +  ++G ++++    IT+
Sbjct: 223 MGFEPQIRKIVSQIRPDRQTLMFSATWPKDVQKLANDFLKDFIQVNIGSMELAANHNITQ 282

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
                  I  V     + +++I+ L  + SE  K       +  K+ ++    + R+  L
Sbjct: 283 -------ITEVCSDFEKRNKLIKHLDQISSENAKVLIF---VGTKRVAD---DITRY--L 327

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            +    ++AI HG     +++ V+  FK G   +LIAT V   G+DV D   +I  +  +
Sbjct: 328 RQDGWPALAI-HGDKEQRERDWVLGEFKAGRSPILIATDVASRGLDVKDIGYVINYDFPN 386

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
                +H++ GR GR     +    +    +K++   +S+L
Sbjct: 387 NCEDYIHRI-GRTGRAGAKGTAYTYFTTENAKSARELVSIL 426


>gi|302877422|ref|YP_003845986.1| primosomal protein N' [Gallionella capsiferriformans ES-2]
 gi|302580211|gb|ADL54222.1| primosomal protein N' [Gallionella capsiferriformans ES-2]
          Length = 724

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 18/146 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V +  +   ++ GGQ +++ P I +  Q  + F+ ++   T  +V + 
Sbjct: 215 LLHGITGSGKTEVYVHLINRVLQTGGQVLLLVPEINLTPQLEHYFLSRFPVAT--LVSLH 272

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH---------- 404
           +G + +  R K  ++   G A I++GT  ++F +     KL L+IVDE+H          
Sbjct: 273 SG-LSENERLKHWQQAQSGAAGIVLGTRLSVFAE---LPKLSLIIVDEEHDASFKQQDGL 328

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATP 430
           R+  +       K     +LL +ATP
Sbjct: 329 RYSARDVAIFRAKQCGVPILLGSATP 354


>gi|229592757|ref|YP_002874876.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
 gi|229364623|emb|CAY52530.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 444

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 146/348 (41%), Gaps = 53/348 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT-------LVALIAMAAAVEAG-GQ 323
           +PT  Q  AI  +L       R L +     G+GKT       L  L      V A   +
Sbjct: 23  TPTPVQAQAIPAVL-----AGRDL-MAAAQTGTGKTAGFAVPLLQLLTTEGPKVAANSAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHII 379
           A+I+ P   LA+Q +  + +Y Q+  +    + G +   PQ  + RK ++ +      +I
Sbjct: 77  ALILCPTRELAEQVHASVAEYAQHLPLTTYAVYGGVSINPQMMKLRKGVDILVATPGRLI 136

Query: 380 IGTHALF-QDSIQYYKLILVIVDEQHR---FGVQQRLK-----LTQKATAPHVLLMTATP 430
                LF Q++++  +L  +++DE  R    G  + L      L +K      LL +AT 
Sbjct: 137 ----DLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR---QTLLFSATF 189

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAY 486
               R L    L D    +++ +      +K  ++P++  R  E+   L       +K  
Sbjct: 190 SDEIRLLAGQMLNDPLTIEVSPRNVAANTVKQWVVPVDKKRKPELFVHLM------RKGR 243

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           W    +  K  +   ++V++   L  +       IHG      ++  +D FK+   ++L+
Sbjct: 244 WKQVLVFAKTRNGVDALVDKLQGLGINADG----IHGDKPQATRQRALDRFKSSEVQILV 299

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
           AT V   G+D+ D  +++  +        +H++ GR GR    GE IS
Sbjct: 300 ATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRI-GRTGRAGNTGEAIS 346


>gi|229552472|ref|ZP_04441197.1| primosomal replication protein n [Lactobacillus rhamnosus LMS2-1]
 gi|229314209|gb|EEN80182.1| primosomal replication protein n [Lactobacillus rhamnosus LMS2-1]
          Length = 805

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 17/172 (9%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P   T  Q+  +  I Q +  K     +L+G  GSGKT V L  +A  + AG  A+++ P
Sbjct: 266 PLPLTADQKKIVDTINQAVKAKEPKTFLLEGVTGSGKTEVYLQVIAQVLAAGQTALMLVP 325

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q  + +K       + V ++   +    +     RIA G+A +++G  +     
Sbjct: 326 EIALTPQMVDRVKG---RFGMHVAVMHSGLSDGEKYDEWRRIARGEAQVVVGARSAAFAP 382

Query: 390 IQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATP 430
           +++  + + I+DE+H    +Q            LK  Q   AP V+L +ATP
Sbjct: 383 LRH--IGVFIMDEEHETSYKQDSVPRYHARDVLLKRAQIHHAP-VVLGSATP 431


>gi|308807515|ref|XP_003081068.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
 gi|116059530|emb|CAL55237.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
          Length = 1030

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 6/116 (5%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG     D+ S +  FK+  C +L+AT+V   G+DV D  ++I  +  +     +H++ 
Sbjct: 607 LHGSKEQSDRHSTISDFKSDVCNILVATSVAARGLDVKDLRLVINYDTPNHLEDYVHRV- 665

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE-----DGFLIAEEDLKQRKEG 631
           GR GR  +  + +        K +   +  LK+++     D   +A+E  ++RKEG
Sbjct: 666 GRTGRAGQKGTAVTFISEDEEKFAPDLVKALKDSKQTVPRDVQRLADEFTRKRKEG 721


>gi|47214564|emb|CAF96237.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 384

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 123/302 (40%), Gaps = 63/302 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +       QA+I+AP   LAQQ  + +        +   
Sbjct: 51  IAQSQSGTGKTATYAISVLQRINTTIKETQAIILAPTRELAQQIQKVVLSLGDYMGVCCH 110

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHRFGV 408
              G       R+ ++ +     HII+GT       L +  I    + ++++DE  R   
Sbjct: 111 ACVGG---TSIRRDIDTMKSTSPHIIVGTPGRVFDMLTRRVISARAIQMLVIDEADRMLG 167

Query: 409 Q----QRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           Q    Q  ++  K  T   ++L++AT     L +T            K   R P K ++ 
Sbjct: 168 QGFKDQIYEIFHKLPTNVQLVLLSATMPAEVLEVT------------KKFMRDPKKILVK 215

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH------------ 511
                    E L +   EG + +++     EK+E    ++ + + +L             
Sbjct: 216 K--------EELTL---EGIRQFYVNT---EKEECKLETLCDLYKTLAITQAVIFVNTRR 261

Query: 512 --EHFTS-------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             E  T        +++++HG M   ++  VM  F++G+ ++LI T ++  GIDV   S+
Sbjct: 262 KAEWLTQRLKSQDFTVSLLHGEMEQNERNLVMKEFRSGSSRVLITTDLLARGIDVQQVSM 321

Query: 563 II 564
           +I
Sbjct: 322 VI 323


>gi|294497160|ref|YP_003560860.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294347097|gb|ADE67426.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 401

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 146/343 (42%), Gaps = 45/343 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT  Q  AI +IL +         I +   G+GKTL  L+ +   ++ G    QAVI+A 
Sbjct: 24  PTAIQTKAISEILANKDV------IGESPTGTGKTLAYLLPVLHRIQPGPSHIQAVILAS 77

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q +  I+ ++Q + I      G    A+ ++ LE++   + +II+GT     + 
Sbjct: 78  SHELVMQIHGEIQTWSQGSGISSAAFIGG---ANMKRQLEKLKK-RPNIIVGTPGRLNEL 133

Query: 390 IQYYKLIL-----VIVDE-------QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+  KL +     +++DE       +H   VQQ +K+    +   +L+ +AT   RT  L
Sbjct: 134 IKMKKLKMHEVKTIVIDEADQLFVPEHFQTVQQIVKMA--LSDRQILVFSATVSERTKSL 191

Query: 438 TSLG-----DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
                    +I++ +  E PA +  ++ V I     D+V    K+V  E  KA      I
Sbjct: 192 AKDMMNHPLEIEVGR-DELPASK--VEHVYIKSEARDKVDVLRKLVRQEQMKALAFFKGI 248

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +   E   +   +R  +           +H      D+ + +  F+ G   +L+AT V  
Sbjct: 249 DTLIEFEEKLTFKRVEA---------GSLHSETKKEDRATTIKGFRKGDFPVLLATDVAA 299

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            G+D+   + +I  +        +H+  GR GR     + I L
Sbjct: 300 RGLDIKGLTHVIHIDVPQDADQYVHR-SGRTGRSGAEGTVISL 341


>gi|55820334|ref|YP_138776.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55736319|gb|AAV59961.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
          Length = 1031

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 26/151 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           IL  D+G GKTL  +  ++A +E G + +I++P  ++     EF KK+    Q+ V +  
Sbjct: 607 ILADDMGLGKTLQTIAYLSAHLEDGQRVLILSPSSLIYNWQDEF-KKFA--PQLDVAVSY 663

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK---LILVIVDEQHRFGVQQRLK 413
           G  P     K  E IA     III ++A F+     YK      +I+DE       Q +K
Sbjct: 664 GLKP-----KRDEIIAEDH-QIIITSYASFRQDFDVYKAGQYDYLILDE------AQVMK 711

Query: 414 LTQKATA--------PHVLLMTATPIPRTLV 436
            TQ   A        PH L ++ TPI   L+
Sbjct: 712 NTQTKIAQYLRDFSVPHCLALSGTPIENHLL 742


>gi|317181556|dbj|BAJ59340.1| ATP-dependent RNA helicase [Helicobacter pylori F57]
          Length = 492

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 142/348 (40%), Gaps = 47/348 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++     +A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G       +K  E I      ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSV---KKQCEFIKKN-PQVMIATPGRLLDH 151

Query: 390 IQY---YKLI--LVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT---PIPRTLV 436
           ++    +K +  +V++DE         L   ++      +   +LL +AT   PI R   
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKR--- 208

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE-- 494
              L D    KI E P     IK  I P N  +  I +   V++E ++A  I   ++   
Sbjct: 209 ---LAD----KILENP-----IKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256

Query: 495 -KKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            KK   F    +  + LH+   S       +HG M   D+ S + +FK     +L+AT V
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|107103467|ref|ZP_01367385.1| hypothetical protein PaerPA_01004537 [Pseudomonas aeruginosa PACS2]
          Length = 449

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 137/350 (39%), Gaps = 51/350 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT-------LVALIAMAAAVEAGG-Q 323
           +PT  Q  AI   L     K R L +     G+GKT       L  L      V A   +
Sbjct: 23  TPTPIQAQAIPPAL-----KGRDL-LAAAQTGTGKTAGFALPLLQRLTLEGPQVAANSVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHII 379
           A+++ P   LA+Q +  ++ Y Q+  +   +  G +   PQ  + RK ++        I+
Sbjct: 77  ALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVD--------IL 128

Query: 380 IGTHALF-----QDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAPHVLLMTATPI 431
           + T         Q+++++ +L  +++DE  R    G  + L            L  A P 
Sbjct: 129 VATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDE----------LFAALPR 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  +   +   R P+   + P N   + + +  V + + +KA   C  
Sbjct: 179 KRQTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHL 238

Query: 492 IEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++  +       +  R  VE    L +    +   IHG      +   +  FK G   LL
Sbjct: 239 LQANRWHQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +AT V   G+D+ +  +++  +        +H++ GR GR       + L
Sbjct: 299 VATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRI-GRTGRAGASGQAVSL 347


>gi|324990619|gb|EGC22555.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353]
 gi|325688268|gb|EGD30287.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72]
          Length = 523

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 131/335 (39%), Gaps = 38/335 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT          ++      QA+I+AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I        Q   LIL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLN 157

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G  + ++           +++  P  R  +L S    D  K       ++P    I   
Sbjct: 158 MGFLEDIES----------IISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK 207

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI----- 520
               E++++  + + E +K +    ++ + ++     V  R     +  T  + I     
Sbjct: 208 ELTTELVDQYYIRVKENEK-FDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRA 266

Query: 521 --IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +H+
Sbjct: 267 EGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 326

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + GR GR  +    I    P    N    L +++N
Sbjct: 327 I-GRTGRAGKSGQSITFVAP----NEMGYLQIIEN 356


>gi|323701905|ref|ZP_08113575.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533209|gb|EGB23078.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
           DSM 574]
          Length = 532

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 139/332 (41%), Gaps = 32/332 (9%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + L+A     + G QA+I+ P   LA Q  E I K  +  +  V 
Sbjct: 49  IGQAQTGTGKTAAFGIPLVARLNFRKRGVQAIIITPTRELAIQVGEEINKIGRYRRARVL 108

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGV 408
            I G      + ++L +      H+++GT     D ++   L L     V++DE      
Sbjct: 109 PIYGGQSIERQIRSLRQ----GVHVVVGTPGRLLDHLRRQTLKLDQVSMVVLDE-----A 159

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            + L +        +L  T  P  +TL+ ++    +IS++  +     P    +   N  
Sbjct: 160 DEMLDMGFIDDIEEILRHTP-PERQTLLFSATMPEEISRLARQYM-TDPKFVTVSKANIT 217

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNF-------RSVVERFNSLHEHFTSSIAII 521
              IE++     E  K   +C  ++  + +         R V E    L     +++++ 
Sbjct: 218 APSIEQIYYEAPEKHKLEALCRILDTTEITQGIVFCRTKRGVDELVAGLQARGYTAVSL- 276

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG +S   + +VM  F++G  +LL+AT V   G+D+   S +I  +        +H++ G
Sbjct: 277 HGDLSQQQRNTVMRQFRSGEVELLVATDVAARGLDIEGVSHVINYDIPQDPEFYVHRI-G 335

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           R GR       I +  P      Y +L +++N
Sbjct: 336 RTGRAGRSGVAITIITP----REYRQLRLIEN 363


>gi|315612651|ref|ZP_07887563.1| DNA replication factor Y [Streptococcus sanguinis ATCC 49296]
 gi|315315238|gb|EFU63278.1| DNA replication factor Y [Streptococcus sanguinis ATCC 49296]
          Length = 798

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++ +     V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGEK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVIIIDEEHEASYKQ 393


>gi|304408310|ref|ZP_07389958.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304342779|gb|EFM08625.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 482

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 140/354 (39%), Gaps = 41/354 (11%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVE 319
           + L  + F+ PT+ Q   I  +LQ          +++   GSGKT    + L  + +  E
Sbjct: 17  RALEGLAFNEPTEVQREVIPVVLQGRDI------VVKSQTGSGKTAAYGIPLCELVSWEE 70

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q +I+ P   LA Q  E +    +  ++    I G  P   ++  L++    + HI+
Sbjct: 71  NKPQVLILTPTRELAVQVKEDLTNIGRFKRVKAAAIYGKQPFHIQKLELKQ----KTHIV 126

Query: 380 IGTHALFQDSIQ-----YYKLILVIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATP 430
            GT     D I+       KL  +++DE         + Q   + ++  A  V ++ +  
Sbjct: 127 AGTPGRVLDHIEKGTFPLSKLAYLVIDEADEMLNMGFIDQVEAIIKRLPAERVTMLFSAT 186

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           +P         D+D  +   +   R P+   I       + IE  ++ +SE  K   +  
Sbjct: 187 LPE--------DVDQLR---RNYMRDPVSVEIQATGLTTDAIEHAQIKVSEADKLELLQS 235

Query: 491 -QIEEKKESN--FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             I E  +S   F    E  N L             IHG M+  ++  VM +F+ G  + 
Sbjct: 236 ITIVENPDSCIIFCRTQEGVNELFRKLARLEYPCDRIHGGMAQEERLEVMGAFRRGQFRY 295

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           LIAT V   GID+ + + +I  +        +H+  GR GR  +    I    P
Sbjct: 296 LIATDVAARGIDIDNITHVINYDFPLDKEGYVHRT-GRTGRAGKRGQAITFVTP 348


>gi|302308572|ref|NP_985521.2| AFL027Cp [Ashbya gossypii ATCC 10895]
 gi|299790695|gb|AAS53345.2| AFL027Cp [Ashbya gossypii ATCC 10895]
          Length = 855

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 142/351 (40%), Gaps = 72/351 (20%)

Query: 302 VGSGKTLVALIAMAAAVEA----GGQ-----AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            GSGKT+  ++ +   ++A    GG       +I++P   LA Q +E + K+T     I 
Sbjct: 322 TGSGKTVSFILPLLRQIKAQRPLGGDETGPLGLILSPTRELALQIHEEVTKFTSGDPSIR 381

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS--------IQYYKLILVIVDEQH 404
            +      +  R+  +  I  G   I+I T   F D         I   +++ V++DE  
Sbjct: 382 SLCCTGGSELKRQ--INDIKRG-VEIVIATPGRFIDLLSLNSGNLINPKRIVFVVMDEAD 438

Query: 405 RF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           R    G + ++    K   P    +L +AT  P  L   +      SKI   P       
Sbjct: 439 RLFDLGFEPQVNQIMKCIRPDKQCVLFSAT-FPNKLKSFA------SKILHDP------- 484

Query: 460 TVIIPINR---IDEVIERLKVVLSEGKKAY-----WIC---PQIEEKKESNFRSVVE--- 505
            V I +N    I+E IE+   + S  +  +     W+      + ++K   F S  +   
Sbjct: 485 -VYITVNSKSLINENIEQKVEIFSNEEDKFKSLIHWLALTQQNLNDEKTIVFVSSQQICD 543

Query: 506 -RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             +N L  +  ++ AI  G++   ++   +  FK     +LI T V+  G++V + S++I
Sbjct: 544 ILYNRLEANGFTTFAIHAGKIY-TERAWNLKCFKETANGILICTEVLSRGLNVPEVSLVI 602

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           I NA     AQ     GR  RG                N  T L++L NTE
Sbjct: 603 IYNAAKT-FAQYVHTTGRTARG---------------SNKGTALTLLMNTE 637


>gi|268611638|ref|ZP_06145365.1| primosomal protein N' [Ruminococcus flavefaciens FD-1]
          Length = 814

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 13/134 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           +  Q+SA   +L  +  +     +L G  GSGKT V    ++  V+ G QA+++ P IG+
Sbjct: 273 SDEQQSAHDAVLSALFDRKAAAFLLHGVTGSGKTSVFEKLISDTVKMGRQAMLLIPEIGL 332

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ--DS 389
             Q    F   + +     V +I   + Q  R    +RI +G A I+IGT  A+F   D+
Sbjct: 333 TPQILRRFRSLFGER----VAVIHSGLSQGQRLDEYKRIKNGSADIVIGTRSAVFAPLDN 388

Query: 390 IQYYKLILVIVDEQ 403
           I      ++IVDE+
Sbjct: 389 IG-----IIIVDEE 397


>gi|228997517|ref|ZP_04157133.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17]
 gi|228762256|gb|EEM11186.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17]
          Length = 433

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 144/333 (43%), Gaps = 59/333 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQ-HYEFIKKYTQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q   E  K       I V
Sbjct: 43  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIEKMLVHQENINV 102

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D ++   ++L     +++DE  +  
Sbjct: 103 LAIYGGQDVAQQMRKLK----GNTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQML 158

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP----I 458
            FG    ++  L +   +   +L +AT +P+          DI K+ ++   ++P    I
Sbjct: 159 HFGFLYDIEDILEETPESKQTMLFSAT-MPK----------DIKKLAKRYM-KEPEMIQI 206

Query: 459 KTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHE 512
           ++  + +N I + VIE       +  +           ++  F +V+      R + L++
Sbjct: 207 QSAEVTVNNIKQRVIETTDRAKQDALRHVM-------DRDQPFLAVIFCRTKRRASKLYD 259

Query: 513 H---FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----II 565
               +  +   +HG +S   +E VM SF++   + LIAT V   G+DV   + +    I 
Sbjct: 260 DLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQYLIATDVAARGLDVEGVTHVFNYDIP 319

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           E+ E +    +H++ GR GR  E    I    P
Sbjct: 320 EDVESY----IHRI-GRTGRAGESGLAITFVAP 347


>gi|319425941|gb|ADV54015.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 449

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 141/355 (39%), Gaps = 53/355 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL-------IAMAAAVEAGGQA 324
           +PT  QE A+   L   + K+ M        GSGKTL  L       I+  +  +   + 
Sbjct: 23  APTAIQEQALPIAL---AGKDLMA---SSKTGSGKTLAFLLPALQRVISTRSLSKRDPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q Y  ++    NTQ     + G      + KAL +    + H I+ T  
Sbjct: 77  LILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAK----EPHFIVATPG 132

Query: 385 LFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKLTQKATAPH----VLLMTATPIP 432
              D ++   L L     +I+DE  R    G   +LK   +A A H     L+ +AT   
Sbjct: 133 RIADHLEQKHLFLNGLELLILDEADRMLDLGFAPQLKTINEA-ADHKRRQTLMFSAT--- 188

Query: 433 RTLVLTSLGDIDISKITEKPAG--RKPIKTVI-IPINRIDEVIERLKVVLSEGKKAYWIC 489
                     +D S+I +  A   + P    I    +  +++ +R+ +      K   + 
Sbjct: 189 ----------LDHSEINDIAATLLKNPAHVAIDASHSEHNDIHQRIFLCDHLDHKEALLT 238

Query: 490 PQIEEKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
             ++++           R   ER  +       + A + G +    +  +MD F  G  +
Sbjct: 239 RLLQDETHKQVIVFTATRPDTERLAAKLSTQGFATAALSGDLKQAARNQIMDQFARGQQQ 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +L+ T V   G+D+++ S++I  +   F    +H++ GR GR       I L  P
Sbjct: 299 ILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDAISLVGP 352


>gi|119499061|ref|XP_001266288.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Neosartorya fischeri NRRL 181]
 gi|142985577|sp|A1D071|FAL1_NEOFI RecName: Full=ATP-dependent RNA helicase fal1
 gi|119414452|gb|EAW24391.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Neosartorya fischeri NRRL 181]
          Length = 399

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 148/354 (41%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    ++++ +   V    QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVVRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + + ++ +GQ H++ GT     D
Sbjct: 101 PTRELATQIQSVIMALGDYMNVQCHACIGGTNIG---EDIRKLDYGQ-HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT +P      
Sbjct: 157 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT-LP------ 209

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E 
Sbjct: 210 ----YDVLDMTTKFMT-DPVRVLV----------KRDELTL-EGIKQYFIAV---EKEEW 250

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 251 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 308

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 309 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENY----IHRI-GRSGR 357


>gi|324502886|gb|ADY41264.1| ATP-dependent RNA helicase DDX46 [Ascaris suum]
          Length = 784

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 131/316 (41%), Gaps = 53/316 (16%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+ M   +          G  AVIM+P   LA Q ++   K+ +   I V 
Sbjct: 170 TGSGKTLAFLLPMFRHIMDQPELEELDGPIAVIMSPTRELAMQTWKEANKFAKPLNIRVA 229

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHR 405
            + G +  + +   L+R     A +I+ T     D +   K        +  +++DE  R
Sbjct: 230 CVYGGVGISDQIGDLKR----GAEVIVCTVGRLTDMLAANKGKVTNLRRVTYLVLDEADR 285

Query: 406 F---GVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
               G + Q +K+          ++ +   PR +   +   +D           KP++ +
Sbjct: 286 MFDMGFEPQVMKIVNNIRPDRQTVLFSATFPRQMEALARKILD-----------KPVEIL 334

Query: 462 IIPINRIDEVIERLKVVLSEGKK---------AYWICPQI---EEKKESNFRSVVERFNS 509
           +   + + + + +  V+L E +K          YW    +    +K+E     V +   S
Sbjct: 335 VGGKSVVCDDVSQNVVILEEHQKMLKLLELLGVYWEHGNVLVFVDKQEKADELVAQLMRS 394

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            +     + A +HG +   D++S +  FK    KLL+AT+V   G+DV    +++  +  
Sbjct: 395 GY-----NCAPLHGGIDQFDRDSTILDFKAAKIKLLVATSVAARGLDVKKLILVVNYDCP 449

Query: 570 HFGLAQLHQLRGRVGR 585
           +     +H++ GR GR
Sbjct: 450 NHYEDYVHRV-GRTGR 464


>gi|321472714|gb|EFX83683.1| hypothetical protein DAPPUDRAFT_230663 [Daphnia pulex]
          Length = 429

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 120/289 (41%), Gaps = 38/289 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+++AP   LAQQ  + +            
Sbjct: 97  IAQAQSGTGKTATFAISLLQQIDIDANECQALVLAPTRELAQQIQKVVLALGDYMDAQCH 156

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G     + R+ L +++ G  H+++GT     D I    L        +L   DE   
Sbjct: 157 ACIGG---TNVREDLRKLSQG-VHVVVGTPGRVFDMINRRALKTNCIKVFVLDEADEMLS 212

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G + ++    K     V         + ++L++    D+ ++T     R PI+   I +
Sbjct: 213 RGFKDQIYDVFKNLPAEV---------QVILLSATMPADVMEVTNHFM-RNPIR---ILV 259

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEHFT 515
            + +  +E +K    + ++  W    + +  ++          N R  V+          
Sbjct: 260 KKEELTLEGIKQFYVQVEREEWKLDTLCDLYDTLSITQAVIFCNTRRKVDWLTEKMHERD 319

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 320 FTVSAMHGEMEQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 368


>gi|320451062|ref|YP_004203158.1| DEAD-box ATP-dependent RNA helicase [Thermus scotoductus SA-01]
 gi|320151231|gb|ADW22609.1| DEAD-box ATP-dependent RNA helicase [Thermus scotoductus SA-01]
          Length = 521

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 66/327 (20%), Positives = 140/327 (42%), Gaps = 49/327 (14%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           +I + +LR    +PT  Q +A+   L+          I Q   G+GKTL   + +A  +E
Sbjct: 11  EIKEALLRRGITAPTPIQAAALPLALEGKDL------IGQARTGTGKTLAFALPIAQGLE 64

Query: 320 AGGQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           A  +      A+++ P   LA Q    ++    + +++   + G      +++ L R   
Sbjct: 65  ASKERGRLPRALVLTPTRELALQVSGELQAVAPHLKVVT--VYGGTGYGKQKEELTR--- 119

Query: 374 GQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLL 425
               +++ T       L Q ++   ++ + ++DE       G ++ ++           +
Sbjct: 120 -GCDVVVATPGRALDYLRQGALDLSQVRIAVLDEADEMLSMGFEEEVEA----------I 168

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           ++ATP  R  +L S     +     K A R     V+I + R + +  + + + + G + 
Sbjct: 169 LSATPKERQTLLFS---ATLPSWARKLAERYMKSPVVINVVREEGITYQEEAIPAPGDRL 225

Query: 486 YWICPQIEEKKESNFRSVV-ERFNSLHEHFTSSI-------AIIHGRMSDIDKESVMDSF 537
             +   +  K  +  R++V  R  +  E   + +         IHG +S  D+E VM +F
Sbjct: 226 SLLSDVLFVK--APKRAIVFTRTKAETEEVATGLLRLGHPARAIHGDLSQTDRERVMRAF 283

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIII 564
           + G  ++L+AT V   G+D+ +  +++
Sbjct: 284 REGEVRVLVATDVAARGLDIPEVDLVV 310


>gi|312277649|gb|ADQ62306.1| Superfamily II DNA/RNA helicase, SNF2 family [Streptococcus
           thermophilus ND03]
          Length = 1031

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 16/146 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           IL  D+G GKTL  +  ++A +E G + +I++P  ++     EF KK+    Q+ V +  
Sbjct: 607 ILADDMGLGKTLQTIAYLSAHLEDGQRVLILSPSSLIYNWQDEF-KKFA--PQLDVAVSY 663

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK---LILVIVDEQHRFGVQQRLK 413
           G  P     K  E IA     III ++A F+     YK      +I+DE       Q  K
Sbjct: 664 GLKP-----KRDEIIAEDH-QIIITSYASFRQDFDVYKAGQYDYLILDEAQVMKNTQT-K 716

Query: 414 LTQ---KATAPHVLLMTATPIPRTLV 436
           ++Q     + PH L ++ TPI   L+
Sbjct: 717 ISQYLRDFSVPHCLALSGTPIENHLL 742


>gi|298247681|ref|ZP_06971486.1| Protein of unknown function DUF1998 [Ktedonobacter racemifer DSM
           44963]
 gi|297550340|gb|EFH84206.1| Protein of unknown function DUF1998 [Ktedonobacter racemifer DSM
           44963]
          Length = 757

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 127/333 (38%), Gaps = 53/333 (15%)

Query: 290 QKNRMLRILQGD-------VGSGKTLVALIAMAAAV----EAGGQAVIMAPIGILAQQHY 338
           Q   + R L G+         SGKT    +A+ + V    + G   + +AP   L QQ  
Sbjct: 65  QHEALTRALDGEHVTIATATASGKTYA--MALPSRVRRHRQQGATLLCIAPTRALIQQWQ 122

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY----- 393
           E ++ +  +  + V++ TG+ PQ  R     R     A  +I T  +    +  Y     
Sbjct: 123 ERLQAW--DADLRVDVYTGDTPQTERAAIRTR-----AQAVITTPDMLHMGLLPYHRSWS 175

Query: 394 ----KLILVIVDEQHR----FG-----VQQRLK--LTQKATAPHVLLMTAT-PIPRTLVL 437
               +L  VIVDE H     FG     + +RLK  L      P  +  +AT   P    +
Sbjct: 176 SFLSRLQDVIVDESHMYRGVFGSHVALILRRLKRVLALHDVQPTFIFGSATIGNPEDHAI 235

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
             +G  D+S ITE  A      T++         IE      + G  A++I   +     
Sbjct: 236 QLIGQ-DVSAITENGAPSGGRLTLLWQPPDAQSYIEE-----AAGLLAFFITQGVRSILF 289

Query: 498 SNFRSVVERF-----NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
              R  VER      N L  +  S +       +   +  +      G    +I+T+ +E
Sbjct: 290 GQARQTVERMVRYTRNKLPSYLQSKVLAYRAGYTPEQRREIERQLAQGEILGIISTSALE 349

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           VGIDV D  + I+       ++   Q  GR GR
Sbjct: 350 VGIDVGDLDVSIVAGFPG-SISSFWQQAGRAGR 381


>gi|295099295|emb|CBK88384.1| Superfamily II DNA/RNA helicase required for DNA uptake (late
           competence protein) [Eubacterium cylindroides T2-87]
          Length = 385

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 18/214 (8%)

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+   H L++    +  LI+  VD     G      +T++A     +L++ATP   +L  
Sbjct: 149 IVCTMHQLYRYPDGFDLLIMDEVDAFPYVGNDVLQTITRRACKGQRVLLSATPDEESLQK 208

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
               ++++  + E+P  + P+   ++P  ++ E     +V++  G    WI    + K+ 
Sbjct: 209 IKQKEMEMVTLFERPH-KHPL---VVP--KVYECNLFFQVLMIIGCCYSWI---RQSKQV 259

Query: 498 SNF---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F   R      N++ + F  S ++IH +  +  K+ ++D F+     +L+ TT++E G
Sbjct: 260 LVFVPRRQDCIWLNTILKLFFRS-SMIHSQTKE--KDEILDQFRQKGLDVLVCTTLLERG 316

Query: 555 IDVVDASIIIIENAEH--FGLAQLHQLRGRVGRG 586
           I V    +I+ + A+H  F  A L Q+ GRVGR 
Sbjct: 317 ITVPSVQVIVCQ-ADHAVFTSASLIQIFGRVGRS 349


>gi|282899322|ref|ZP_06307291.1| DEAD/DEAH box helicase-like protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195779|gb|EFA70707.1| DEAD/DEAH box helicase-like protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 497

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 156/360 (43%), Gaps = 56/360 (15%)

Query: 266 LRNIPFS-PTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           L N+ F+ PT  Q  AI  +L  +D+        + Q   G+GKT    + +   ++   
Sbjct: 19  LENMGFTTPTNIQTQAIPQLLAGRDV--------VGQSQTGTGKTAAFSLPILERLDPNK 70

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              QA+++ P   LA Q ++ I ++  ++++ V  I G   Q+  R+ ++ +  G  H++
Sbjct: 71  RAVQALVLTPTRELAMQVHDAISQFMGDSELRVLAIYGG--QSIDRQMIQ-LKRG-VHVV 126

Query: 380 IGT----------HALFQDSIQYYKLILVIVDEQHRFG-VQQRLK-LTQKATAPHVLLMT 427
           +GT           +L  D ++++  +L   DE    G +   +K L+Q        L +
Sbjct: 127 VGTPGRVIDLLERGSLKLDQVKWF--VLDEADEMLSMGFIDDVIKILSQAPQNRQTALFS 184

Query: 428 ATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           AT  P  R LV   L    ++   E+P      K     IN++  +I R         KA
Sbjct: 185 ATMPPSIRQLVNKFLNS-PVTVTVEQP------KATPTKINQVAYLIPR------HWTKA 231

Query: 486 YWICPQIE-EKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
             + P +E E  E+        R+  E  N L +    S+   HG +S   +E ++  F+
Sbjct: 232 KALQPILEMEDPETALIFVRTRRTAAELTNQL-QSAGHSVDEYHGDLSQQARERLLTRFR 290

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N   + ++AT +   G+DV   S +I  +        +H++ GR GR  +  + I L  P
Sbjct: 291 NRQVRWVVATDIAARGLDVDLLSHVINFDLPDSVETYVHRI-GRTGRAGKEGTAISLVQP 349


>gi|260770312|ref|ZP_05879245.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
 gi|260615650|gb|EEX40836.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
          Length = 632

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 136/345 (39%), Gaps = 45/345 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   ++      QA++MA
Sbjct: 28  SPTPIQAAAIPLLLEGRDA------LGKAQTGTGKTAAFSLPLLNKLDLNQYKPQAIVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   QN + + V  I G      + +AL+      AHI++GT    +
Sbjct: 82  PTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQMRALK----SGAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPRTLVLTSLGDIDIS 446
           D I   +L L   DE H F + +  ++ +      V  +M   P     VL S       
Sbjct: 138 DLISRERLHL---DECHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLFS------- 187

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE---------EKKE 497
             T  P  +  +   +    R+D       V   E  + YW+   +E         E +E
Sbjct: 188 -ATMPPMVKDIVDRFLRDPARVDVAGSNQTVAKVE--QQYWVVKGVEKDEAMARLLETEE 244

Query: 498 SNFRSVVERFNSLHEHFTSSI-------AIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           ++   V  R     E     +       A +HG +    +E  +D  K G   +L+AT V
Sbjct: 245 TDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDV 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +  G+DV   + +   +      + +H++ GR GR       ILL
Sbjct: 305 VARGLDVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILL 348


>gi|228939265|ref|ZP_04101858.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228972144|ref|ZP_04132760.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978757|ref|ZP_04139128.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           Bt407]
 gi|228781018|gb|EEM29225.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           Bt407]
 gi|228787628|gb|EEM35591.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820460|gb|EEM66492.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939841|gb|AEA15737.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 389

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 148/346 (42%), Gaps = 48/346 (13%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           T+ Q+ AI  IL  QD+        I +   G+GKTL  L+ +   +       Q VI+A
Sbjct: 22  TEIQKQAIPTILEGQDV--------IAESPTGTGKTLAYLLPLLHKINPEVKQPQVVILA 73

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L  Q +E ++K+T  T+I    + G    A  ++ +E++      +I+G+     +
Sbjct: 74  PTRELVMQIHEEVQKFTAGTEISGASLIGG---ADIKRQVEKLKK-HPRVIVGSPGRILE 129

Query: 389 SIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            I+  KL +     ++ DE  +   Q+ +   Q        ++ +T   R LV  S    
Sbjct: 130 LIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQD-------VIKSTMRDRQLVFFS---A 179

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWI--CPQIEEKKESN 499
            ++K  E  A    ++  ++ + R +   ++E   ++    +K  ++     + + K   
Sbjct: 180 TMTKAAEDAARDLAVEPQLVRVTRAESKSLVEHTYIICERREKNDYVRRIMHMGDVKAVA 239

Query: 500 FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F +   R + + +         A +H   S  ++E+ M +F+ G  ++L+AT +   GID
Sbjct: 240 FLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGID 299

Query: 557 VVDASIIIIENAEHFGLA----QLHQLRGRVGRGEEISSCILLYHP 598
           + D + +I     H  L     Q     GR GR  +  + + L  P
Sbjct: 300 IDDLTHVI-----HLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTP 340


>gi|146076715|ref|XP_001462984.1| nucleolar RNA helicase II [Leishmania infantum JPCM5]
          Length = 629

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID--VVDASIIIIENAEHFGLAQLH 577
            +HG M    +ES M SF++    +LIAT V   G+D  +VD   ++I+ A    +    
Sbjct: 368 CLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVD---LVIQCAPPSDIDAFI 424

Query: 578 QLRGRVGRGEEISSCILLYHP 598
              GR GR      C+LLY P
Sbjct: 425 HRAGRTGRAGRKGVCVLLYQP 445


>gi|70922587|ref|XP_734436.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56507175|emb|CAH83632.1| hypothetical protein PC300608.00.0 [Plasmodium chabaudi chabaudi]
          Length = 191

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 8/79 (10%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIM 327
           F P+K Q  A+  IL      NR L I Q   GSGKTL  +IAM + +       QAV +
Sbjct: 99  FGPSKIQAYALPIILD----SNRNL-IAQSQNGSGKTLTFVIAMLSKINRALYSLQAVCI 153

Query: 328 APIGILAQQHYEFIKKYTQ 346
            P   LAQQ+Y+ + K+T+
Sbjct: 154 CPTRELAQQNYDVVGKFTK 172


>gi|116627171|ref|YP_819790.1| SNF2 family DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116100448|gb|ABJ65594.1| Superfamily II DNA/RNA helicase, SNF2 family [Streptococcus
           thermophilus LMD-9]
          Length = 1031

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 16/146 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           IL  D+G GKTL  +  ++A +E G + +I++P  ++     EF KK+    Q+ V +  
Sbjct: 607 ILADDMGLGKTLQTIAYLSAHLEDGQRVLILSPSSLIYNWQDEF-KKFA--PQLDVAVSY 663

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK---LILVIVDEQHRFGVQQRLK 413
           G  P     K  E IA     III ++A F+     YK      +I+DE       Q  K
Sbjct: 664 GLKP-----KRDEIIAEDH-QIIITSYASFRQDFDVYKAGQYDYLILDEAQVMKNTQT-K 716

Query: 414 LTQ---KATAPHVLLMTATPIPRTLV 436
           ++Q     + PH L ++ TPI   L+
Sbjct: 717 ISQYLRDFSVPHCLALSGTPIENHLL 742


>gi|23011993|ref|ZP_00052190.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 551

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 5/78 (6%)

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A IHG  S   +E  + +F++G+C++L+AT +   GIDV   + ++  +  +   + +H+
Sbjct: 311 AAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGIDVEGVTHVVNYDLPNVPESYVHR 370

Query: 579 LRGRVGR----GEEISSC 592
           + GR  R    G+ IS C
Sbjct: 371 I-GRTARAGAEGQAISFC 387


>gi|282917430|ref|ZP_06325183.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus D139]
 gi|282318632|gb|EFB48989.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus D139]
          Length = 506

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 156/376 (41%), Gaps = 60/376 (15%)

Query: 249 KEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGK 306
           KE+GI  N       + L ++ F  PT  Q+ +I   LQ +        IL Q   G+GK
Sbjct: 5   KELGISDNT-----VQSLESMGFKEPTPIQKDSIPYALQGID-------ILGQAQTGTGK 52

Query: 307 TLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           T    I +   V  + G Q++I+AP   LA Q  E ++++++   + V  + G MP   +
Sbjct: 53  TGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAERLREFSRGQGVQVVTVFGGMPIERQ 112

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQ 416
            KAL++       I++GT     D +          + LIL   DE    G    ++   
Sbjct: 113 IKALKK----GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIM 168

Query: 417 K---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
               A     +L +AT +P+ +         + +  + P   K IKT+   ++  D  IE
Sbjct: 169 DKIPAVQRQTMLFSAT-MPKAIQAL------VQQFMKSP---KIIKTMNNEMS--DPQIE 216

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-------AIIHGRMS 526
               ++ E +K +       +  +     V  R     +  TS++         +HG ++
Sbjct: 217 EFYTIVKELEK-FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDIT 275

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGR 582
              +  V+  FKN    +L+AT V   G+D+   S +    I ++ E +     H++ GR
Sbjct: 276 QAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY----THRI-GR 330

Query: 583 VGRGEEISSCILLYHP 598
            GR  +    +   +P
Sbjct: 331 TGRAGKEGIAVTFVNP 346


>gi|154299943|ref|XP_001550389.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10]
 gi|160380638|sp|A6SEH9|DED1_BOTFB RecName: Full=ATP-dependent RNA helicase ded1
 gi|150857142|gb|EDN32334.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10]
          Length = 683

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 113/267 (42%), Gaps = 48/267 (17%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           ++I+AP   L  Q Y+  +K+   + +   ++ G      + + +ER       +++ T 
Sbjct: 274 SLILAPTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQMER----GCDLLVATP 329

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF-------------------GVQQRLKLTQKAT 419
               D I+  ++ L     +++DE  R                    GVQ R  L   AT
Sbjct: 330 GRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGVQNRQTLMFSAT 389

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDIS--KITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            P  + M A    +  V  S+G +  +   IT+K          +  +  ID+    L +
Sbjct: 390 FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQK----------VEYVEDIDKRSVLLDI 439

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           + + G     I   +E K+ ++  S       ++++F ++   IHG  +  ++E  ++ F
Sbjct: 440 LHTHGAGLTLIF--VETKRMADSLSDF----LINQNFPATS--IHGDRTQRERERALEMF 491

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIII 564
           +NG C +L+AT V   G+D+ +   ++
Sbjct: 492 RNGRCPILVATAVAARGLDIPNVKHVV 518


>gi|153835973|ref|ZP_01988640.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
 gi|308094943|ref|ZP_05892523.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus AN-5034]
 gi|308095142|ref|ZP_05903781.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus Peru-466]
 gi|308125529|ref|ZP_05775749.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus K5030]
 gi|149750727|gb|EDM61472.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
 gi|308085569|gb|EFO35264.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus Peru-466]
 gi|308092338|gb|EFO42033.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus AN-5034]
 gi|308112170|gb|EFO49710.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus K5030]
          Length = 444

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 148/367 (40%), Gaps = 67/367 (18%)

Query: 302 VGSGKTLVALIAM-------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  ++ M        +      +AVI+AP   LA+Q Y  ++           +
Sbjct: 47  TGSGKTLAFVLPMLHKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYDAAL 106

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---F 406
           I G      + KAL R        I+ T     D +++  L L     +I+DE  R    
Sbjct: 107 ILGGENFNDQVKALRRYPK----FIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDL 162

Query: 407 GVQQRLKLTQKATAPH----VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           G    L+    A A H     L+ +AT     L    + DI  S++   P      K + 
Sbjct: 163 GFAPELRRIHNA-AKHRRRQTLMFSAT-----LDHAEVNDI-ASEMLNAP------KRIA 209

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--------ESNFRSVV---------E 505
           + ++      E  K +  +    +++C  ++ K+        E+ +R V+         E
Sbjct: 210 VGVSN-----EEHKDITQK----FYLCDHLDHKEAILERVLSEAEYRQVIIFTATRDDTE 260

Query: 506 RFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           R  + L+E    ++A+  G ++   + ++M  F+    K+L+ T V   G+D+   + +I
Sbjct: 261 RLTAKLNEKKLKAVAL-SGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIATVTHVI 319

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
             +        +H++ GR GR       I L  P    +S+ R+      +  F +  ED
Sbjct: 320 NFDMPKHTEEYVHRV-GRTGRAGNKGDAISLVGPK-DWDSFKRIETYLQQDLAFSVF-ED 376

Query: 625 LKQRKEG 631
           LK + +G
Sbjct: 377 LKGKFKG 383


>gi|42518357|ref|NP_964287.1| RNA helicase [Lactobacillus johnsonii NCC 533]
 gi|41582642|gb|AAS08253.1| probable RNA helicase [Lactobacillus johnsonii NCC 533]
          Length = 484

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 136/323 (42%), Gaps = 40/323 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + +   ++      QA+I+ P   LA Q  E + +  ++ +  V+
Sbjct: 42  IGQAQTGTGKTAAFGLPILQNLDKQHDSIQAIIIEPTRELAIQTQEELFRLGRDEKARVQ 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
           ++ G      + +AL++       I++GT     D     +I   K+  +++DE      
Sbjct: 102 VVYGGADIRRQIRALKQTPA----ILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLD 157

Query: 407 -GVQQRLK-LTQKATAPHVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIKTV 461
            G  Q ++ + + A++ H  L+ +  +P+ ++      + D +I KI  K          
Sbjct: 158 MGFIQDIESILKYASSKHQTLLFSATMPKPILRIGEKFMNDPEIVKIKGKE--------- 208

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS-- 516
            +  N ID+   R K    E +K   +C  I+ +       F     R + L     +  
Sbjct: 209 -LTANLIDQYFVRAK----ENEKFDILCRLIDVQNPDLAVIFGRTKRRVDELTRGLQARG 263

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + A IHG +S   + SV+  F+ G   +L+AT V   G+D+   S +   +      + 
Sbjct: 264 YNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDISGVSHVYNYDIPQDPNSY 323

Query: 576 LHQLRGRVGRGEEISSCILLYHP 598
           +H++ GR GR  +    +    P
Sbjct: 324 VHRI-GRTGRAGQNGMSVTFVTP 345


>gi|11499835|ref|NP_071079.1| DEAD-box ATP dependent DNA helicase [Archaeoglobus fulgidus DSM
           4304]
 gi|2648271|gb|AAB89003.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 368

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 133/325 (40%), Gaps = 42/325 (12%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   GSGKT    + +   V+      QA+++ P   LA Q  + I+      ++ V  +
Sbjct: 51  QAQTGSGKTAAFALPILDLVDERSKDVQAIVITPTRELALQVKDEIESLRGGKKVHVLAV 110

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---G 407
            G  P       +ER+  G   I++GT     D ++   L L      ++DE  R    G
Sbjct: 111 YGGQPIF---PQIERLRKG-VQIVVGTPGRVIDHLERRTLSLEKVRFFVLDEADRMLDMG 166

Query: 408 VQQRLK--LTQKATAPHVLLMTATPIPRTLVLTS--LGDIDI----SKITEKPAGRKPIK 459
               ++  L        VL+ +AT  P  L L    + D ++    SKIT +    + +K
Sbjct: 167 FIDDIERILRHAGAERRVLMFSATMPPEVLRLARRYMRDYEVVRVHSKITPENVEHRCLK 226

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             + P  R     E L  +L E    Y I  C   +E +E   R     + +        
Sbjct: 227 --VNPEKRF----EHLCRILDENN-FYGIVFCQTKKETRELGRRLRARGYKA-------- 271

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              ++G +    +ES++ +F+ G  ++L+AT V   GIDV D + ++  +      A +H
Sbjct: 272 -DALNGDIPQHKRESILRNFRKGYTRVLVATDVAARGIDVKDLTHVVNYSIPQDPEAYIH 330

Query: 578 QLRGRVGRGEEISSCILLYHPPLSK 602
           +  GR GR  +    I    P  S+
Sbjct: 331 RT-GRTGREGKRGKAITFVAPWESR 354


>gi|15801822|ref|NP_287840.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 EDL933]
 gi|15831181|ref|NP_309954.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           Sakai]
 gi|168749013|ref|ZP_02774035.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756028|ref|ZP_02781035.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4401]
 gi|168769429|ref|ZP_02794436.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775172|ref|ZP_02800179.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782877|ref|ZP_02807884.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788327|ref|ZP_02813334.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC869]
 gi|168799657|ref|ZP_02824664.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC508]
 gi|208811167|ref|ZP_03253000.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815022|ref|ZP_03256201.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820345|ref|ZP_03260665.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399223|ref|YP_002270403.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4115]
 gi|217329397|ref|ZP_03445477.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           TW14588]
 gi|254792938|ref|YP_003077775.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224337|ref|ZP_05938618.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257409|ref|ZP_05949942.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291282438|ref|YP_003499256.1| ATP-independent RNA helicase DbpA [Escherichia coli O55:H7 str.
           CB9615]
 gi|331652393|ref|ZP_08353412.1| ATP-independent RNA helicase DbpA [Escherichia coli M718]
 gi|12515409|gb|AAG56454.1|AE005371_10 ATP-dependent RNA helicase [Escherichia coli O157:H7 str. EDL933]
 gi|13361392|dbj|BAB35350.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. Sakai]
 gi|187769343|gb|EDU33187.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016533|gb|EDU54655.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999660|gb|EDU68646.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356796|gb|EDU75215.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361561|gb|EDU79980.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4486]
 gi|189371812|gb|EDU90228.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC869]
 gi|189377976|gb|EDU96392.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC508]
 gi|208724673|gb|EDZ74381.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731670|gb|EDZ80358.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740468|gb|EDZ88150.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160623|gb|ACI38056.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209771330|gb|ACI83977.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209771332|gb|ACI83978.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209771334|gb|ACI83979.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209771336|gb|ACI83980.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|217317836|gb|EEC26264.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           TW14588]
 gi|254592338|gb|ACT71699.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O157:H7 str. TW14359]
 gi|290762311|gb|ADD56272.1| ATP-independent RNA helicase DbpA [Escherichia coli O55:H7 str.
           CB9615]
 gi|320189895|gb|EFW64547.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC1212]
 gi|320659158|gb|EFX26750.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str. USDA
           5905]
 gi|326340988|gb|EGD64781.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           1125]
 gi|326343226|gb|EGD66993.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           1044]
 gi|331050671|gb|EGI22729.1| ATP-independent RNA helicase DbpA [Escherichia coli M718]
          Length = 457

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|315181381|gb|ADT88294.1| ATP-dependent RNA helicase DeaD [Vibrio furnissii NCTC 11218]
          Length = 632

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 136/345 (39%), Gaps = 45/345 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   ++      QA++MA
Sbjct: 28  SPTPIQAAAIPLLLEGRDA------LGKAQTGTGKTAAFSLPLLNKLDLNQYKPQAIVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   QN + + V  I G      + +AL+      AHI++GT    +
Sbjct: 82  PTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQMRALK----SGAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPRTLVLTSLGDIDIS 446
           D I   +L L   DE H F + +  ++ +      V  +M   P     VL S       
Sbjct: 138 DLISRERLHL---DECHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLFS------- 187

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE---------EKKE 497
             T  P  +  +   +    R+D       V   E  + YW+   +E         E +E
Sbjct: 188 -ATMPPMVKDIVDRFLRDPARVDVAGSNQTVAKVE--QQYWVVKGVEKDEAMARLLETEE 244

Query: 498 SNFRSVVERFNSLHEHFTSSI-------AIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           ++   V  R     E     +       A +HG +    +E  +D  K G   +L+AT V
Sbjct: 245 TDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDV 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +  G+DV   + +   +      + +H++ GR GR       ILL
Sbjct: 305 VARGLDVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILL 348


>gi|241573363|ref|XP_002402985.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215502109|gb|EEC11603.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 431

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG  S  +++ V+  F++G   +L+AT V   G+DV D   +I  +  +     +H++
Sbjct: 267 CIHGDKSQPERDWVLTEFRSGKSPILVATDVAARGLDVDDIKFVINYDYPNCSEDYVHRI 326

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GR  R  +  +    + P  SK +   +SVLK
Sbjct: 327 -GRTARSNKTGTAYTFFTPHNSKQANELISVLK 358


>gi|153009469|ref|YP_001370684.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561357|gb|ABS14855.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 464

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A IHG  S   ++  ++ F++G+ ++LIAT +   GIDV   S ++  +        +H
Sbjct: 285 VAAIHGNKSQNARQRALNGFRDGSLRILIATDIAARGIDVPGISHVVNYDLPDEPETYVH 344

Query: 578 QLRGRVGRGEEISSCILLYHP 598
           ++ GR GR     + I LY P
Sbjct: 345 RI-GRTGRNGASGASITLYDP 364


>gi|9971884|gb|AAG10446.1|AF279106_8 predicted primosomal protein N' (replication factor Y) -
           superfamily II helicase [uncultured marine gamma
           proteobacterium EBAC31A08]
          Length = 662

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 93/233 (39%), Gaps = 29/233 (12%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP- 329
           F  TK QE A+K + +    K     +L G  GSGKT V L      ++     +++ P 
Sbjct: 131 FDLTKDQEKAVKALSK---SKGFSPTLLYGVTGSGKTEVYLRVAETFIKNNKSVLVLVPE 187

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I +  Q    F  ++       + I       A R K   +   G   II+GT +     
Sbjct: 188 INLTPQLLSRFENRFNGE----IGIYHSKQTAAKRLKTWLKAKFGSIKIIVGTRS--SAL 241

Query: 390 IQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATPIPRTLVLT 438
           +    + L+I+DE+H    +Q            +K  Q A  P ++L +ATP  +TL L 
Sbjct: 242 VPLDNIGLIIIDEEHDQSFRQSEGFKFSARDLSIKRAQLADIP-IILGSATPSLQTLKLV 300

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINR-------IDEVIERLKVVLSEGKK 484
                    I  +  G KP K + + IN          E IE ++  +  G++
Sbjct: 301 KENKFIRVDIPNRVDGNKPPKLIALDINNSPLIGGVAKETIEAMQSTIDRGEQ 353


>gi|86570094|ref|NP_001033411.1| hypothetical protein F53H1.1 [Caenorhabditis elegans]
 gi|14574201|gb|AAK68386.1|AF045641_1 Hypothetical protein F53H1.1 [Caenorhabditis elegans]
          Length = 970

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 153/356 (42%), Gaps = 61/356 (17%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------AAA 317
           +L+   +S PT  Q  AI  I   MS ++ ++ I +   GSGKTL  L+ M         
Sbjct: 318 VLKKFEYSKPTSIQAQAIPSI---MSGRD-VIGIAK--TGSGKTLAFLLPMFRHILDQPE 371

Query: 318 VEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           +E G    AVI+AP   LA Q Y+   K+ +   + V    G +  + +   L+R     
Sbjct: 372 LEEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKR----G 427

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF---GVQQRLKLTQKATAP--H 422
           A I++ T     D +           ++  +++DE  R    G + ++        P   
Sbjct: 428 AEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQ 487

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPA----GRKPIKTVIIPIN--------RIDE 470
            +L +AT  PR +   +       K+ +KP     G K +    I  N        +  +
Sbjct: 488 TVLFSAT-FPRHMEALA------RKVLDKPVEILVGGKSVVCSDITQNAVICAEHQKFLK 540

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           ++E L +   EG    ++       K+     +V++   L     +S+A +HG +   D+
Sbjct: 541 LLELLGMYYEEGSSIVFV------DKQEKADDIVDQ---LMRTGYNSVAPLHGGIDQHDR 591

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           +S +  FK G  K+L+AT+V   G+DV +  +++  +  +     +H++ GR GR 
Sbjct: 592 DSSIADFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRV-GRTGRA 646


>gi|328874858|gb|EGG23223.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
          Length = 2645

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           MS   +  +M+SF+ G CK L+AT+V+E GIDV   +++I  + +   L  + Q RGR 
Sbjct: 582 MSTEKQNRIMESFRKGDCKFLVATSVLEEGIDVQQCNMVISFDPD-LNLRNMIQRRGRA 639


>gi|325694070|gb|EGD35988.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150]
          Length = 523

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 131/335 (39%), Gaps = 38/335 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT          ++      QA+I+AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I        Q   LIL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLN 157

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G  + ++           +++  P  R  +L S    D  K       ++P    I   
Sbjct: 158 MGFLEDIES----------IISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK 207

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI----- 520
               E++++  + + E +K +    ++ + ++     V  R     +  T  + I     
Sbjct: 208 ELTTELVDQYYIRVKENEK-FDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRA 266

Query: 521 --IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +H+
Sbjct: 267 EGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 326

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + GR GR  +    I    P    N    L +++N
Sbjct: 327 I-GRTGRAGKSGQSITFVAP----NEMGYLQIIEN 356


>gi|332653345|ref|ZP_08419090.1| primosomal protein N` [Ruminococcaceae bacterium D16]
 gi|332518491|gb|EGJ48094.1| primosomal protein N` [Ruminococcaceae bacterium D16]
          Length = 817

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 11/144 (7%)

Query: 266 LRNIPFSP----TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           L ++P  P     + Q++A++ + +   ++   + +L G  GSGKT V +  +   ++ G
Sbjct: 270 LDDVPPKPLPELNEEQQAALEGLDRLCREEKPAVALLYGVTGSGKTQVYIRLIRQVLDRG 329

Query: 322 GQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G A+++ P I +  Q    F   + Q     + ++  ++P   R    +R   G+A ++I
Sbjct: 330 GSALVLVPEIALTPQLLRVFAAHFGQE----IAVLHSSLPAGERYDEWKRARSGKARVVI 385

Query: 381 GTHALFQDSIQYYKLILVIVDEQH 404
           GT +     +Q   L L+I+DE+ 
Sbjct: 386 GTRSAVFAPLQ--NLSLLILDEEQ 407


>gi|291546967|emb|CBL20075.1| ATP-dependent DNA helicase, RecQ-like [Ruminococcus sp. SR1/5]
          Length = 609

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           H  +SD ++ +  D F    C++++AT    +GID  D   +I  N     +   +Q  G
Sbjct: 258 HAGLSDEERRNNQDDFIYDRCRVMVATNAFGMGIDKSDVRYVIHYNMPK-NMEGYYQEAG 316

Query: 582 RVGRGEEISSCILLY 596
           R GR  + + CILLY
Sbjct: 317 RAGRDGDPAECILLY 331


>gi|239831927|ref|ZP_04680256.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239824194|gb|EEQ95762.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 470

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A IHG  S   ++  ++ F++G+ ++LIAT +   GIDV   S ++  +        +H
Sbjct: 292 VAAIHGNKSQNARQRALNGFRDGSLRILIATDIAARGIDVPGISHVVNYDLPDEPETYVH 351

Query: 578 QLRGRVGRGEEISSCILLYHP 598
           ++ GR GR     + I LY P
Sbjct: 352 RI-GRTGRNGASGASITLYDP 371


>gi|218887215|ref|YP_002436536.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758169|gb|ACL09068.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 531

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 128/312 (41%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILA-QQHYEFIKKYTQNTQIIV 352
           I Q   G+GKT    + L+      E   Q +I+ P   LA Q   E  +  ++   + V
Sbjct: 45  IGQAQTGTGKTAAFGIPLLERIDPREKDIQGIILCPTRELAIQVAEELTQLASRKRGLYV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQH 404
             + G  P   + KAL R     A +++GT     D ++   + L  V        DE  
Sbjct: 105 LPVYGGQPIDRQFKALRR----GAQVVVGTPGRVMDHMERGTINLSTVRMAVLDEADEML 160

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKT 460
             G +  ++  L Q       +  +AT  P  L +    L   +  K+T+K      I+ 
Sbjct: 161 DMGFRDDIEHILGQVPGEAQTVFFSATMPPAILDMAQRFLKTPEFLKVTQKQVTVPSIEQ 220

Query: 461 V---IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +   + P  +++ +   L   L   K+A   C        S  R V E    L      +
Sbjct: 221 IYYEVRPFQKLEALCRVLD--LYNPKRAIVFC--------STKRGVDELTQHLQGRGYQA 270

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII---IENA-EHFGL 573
             + HG ++   ++ VM  F++   ++L+AT V   GIDV D   ++   I NA EH+  
Sbjct: 271 DGL-HGNLNQSQRDRVMARFRSNGIEILVATDVAARGIDVDDVEAVVNYDIPNAVEHY-- 327

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 328 --VHRI-GRTGR 336


>gi|207347520|gb|EDZ73663.1| YBR237Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 799

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 156/396 (39%), Gaps = 78/396 (19%)

Query: 302 VGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQII 351
            GSGKT+  L+ +   V         E G   +I+AP   LA Q +E + K+T+ +T I 
Sbjct: 302 TGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEADTSIR 361

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD--------SIQYYKLILVIVDEQ 403
               TG    +  +K +  +  G   I++ T   F D         +   ++  V++DE 
Sbjct: 362 SVCCTGG---SEMKKQITDLKRG-TEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEA 417

Query: 404 HRF---GVQQRLKLTQKATAP--HVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGR 455
            R    G + ++    K   P    +L +AT  P   R+  +  L               
Sbjct: 418 DRLFDLGFEPQITQIMKTVRPDKQCVLFSAT-FPNKLRSFAVRVL--------------H 462

Query: 456 KPIKTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKE---------SNFRSVVE 505
            PI   I     I+E V ++ ++  SE +K   +   I E+ E             S VE
Sbjct: 463 SPISITINSKGMINENVKQKFRICHSEDEKFDNLVQLIYERSEFFDEVQSENDGQSSDVE 522

Query: 506 RFNSLHEHFTSSIAI-----------------IHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             ++    F SS  I                 IH      ++   ++ FK     +L+ T
Sbjct: 523 EVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKREKNSILLCT 582

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPLSKNSYTR 607
            V+  G++V + S++II NA     AQ     GR  RG    + I LL H  LS  +Y  
Sbjct: 583 EVLSRGLNVPEVSLVIIYNAVK-TFAQYVHTTGRTARGSRSGTAITLLLHDELS-GAYIL 640

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
              +++ E   + A   L+ ++  E+    +SGM K
Sbjct: 641 SKAMRDEE---IKASNSLQAKELQEMSAKFESGMKK 673


>gi|220909835|ref|YP_002485146.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 7425]
 gi|219866446|gb|ACL46785.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7425]
          Length = 457

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 130/319 (40%), Gaps = 31/319 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + +   ++      QA+I+ P   LA Q  + I  +  + +I V 
Sbjct: 44  IGQAQTGTGKTAAFALPILERIDTQSPAVQALILTPTRELAVQVSQSIYNFKADPKIRVL 103

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
            I G   QA  R+ +ER+ H  A +++GT     D +            L+L   DE   
Sbjct: 104 AIYGG--QAIERQ-IERL-HKGAQVLVGTPGRVLDLLNRGVLNLNALAWLVLDEADEMLD 159

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G    +K  L+Q      +   +AT  P    L +        IT +     P      
Sbjct: 160 MGFMPDVKQILSQAPAQRQMAFFSATMAPPVYRLATQFLRSPETITVEHPKAAP------ 213

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSLHEHFTSSIA 519
             +RI++V  ++    S+      +  ++E+ + +      R V     S  +    S+ 
Sbjct: 214 --SRIEQVAYKVPRGWSKSTTLQLVL-EMEDPESAIIFVRTRKVAAELTSQLQSHGYSVD 270

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG +S   +E ++  F+ G  + ++AT +   G+ V D + +I  +      + +H++
Sbjct: 271 EYHGDLSQSQRERLLQRFRQGQIRWVVATDIAARGLHVDDLTHVINYDLPDSVESYVHRI 330

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR GR  +    + L+ P
Sbjct: 331 -GRTGRAGKTGIAVSLFQP 348


>gi|90413445|ref|ZP_01221437.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90325533|gb|EAS42010.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 626

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 115/292 (39%), Gaps = 37/292 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA++MAP   LA Q    IK   QN + + V  I G      + +AL+      AHI++G
Sbjct: 76  QAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALK----NGAHIVVG 131

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPRTLVLTSL 440
           T    +D I   +L L   DE   F + +  ++ +      V  +M   P     VL S 
Sbjct: 132 TPGRVKDLISRDRLHL---DEVSTFVLDEADEMLKMGFVDDVTWIMEQAPASAQRVLFS- 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
                   T  P  ++ +   +    RID   E   V  S+  + +WI   +E+ +    
Sbjct: 188 -------ATMPPIVKQIVDRFLRSPERIDVAGENRTV--SQVSQQFWIVKGVEKDEAMIR 238

Query: 497 ----ESNF---------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               E N          R   ER            A +HG +    +E  +D  K G   
Sbjct: 239 MLETEENIDASIVFVRTRQDTERLADWLSSRGCKAAALHGDIPQSLRERTVDHIKRGVID 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +L+AT V+  G+DV   + +   +      + +H++ GR GR       ILL
Sbjct: 299 VLVATDVVARGLDVQRITHVFNYDIPFDVESYIHRI-GRTGRAGRSGKAILL 349


>gi|228915063|ref|ZP_04078662.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844597|gb|EEM89649.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 447

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 136/315 (43%), Gaps = 49/315 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV--EAGG-QAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   +  E G  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 43  IGQAKTGTGKTLAFVLPILEKIDPECGDVQALIVAPTRELALQITTEIKKMLVQREDINV 102

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 103 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 158

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 159 YFGFLYDIEDILDETPGSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 207

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 208 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 264

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 265 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVES 324

Query: 571 FGLAQLHQLRGRVGR 585
           +    +H++ GR GR
Sbjct: 325 Y----IHRI-GRTGR 334


>gi|311739401|ref|ZP_07713236.1| ATP-dependent RNA helicase RhlE [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305217|gb|EFQ81285.1| ATP-dependent RNA helicase RhlE [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 432

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 148/349 (42%), Gaps = 61/349 (17%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKT-------LVALIAMAAAVEAGGQAVIMAP 329
           Q++AI D L   + K+ + R   G  GSGKT       L  L    A+  A  +A+I+AP
Sbjct: 29  QKAAIPDAL---AGKDVLGR---GPTGSGKTYTFGLPILARLAGTGASKPAHPRALILAP 82

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q ++ + +      + V  + G +   H  ++L R       +++ T    QD 
Sbjct: 83  TRELATQIHQRLDEPAATLGLRVLAVVGGVNINHHIRSLAR----PVDVLVATPGRAQDL 138

Query: 390 IQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           I   KL L  V     DE  +      L   +K     +L +T     R L   +L D D
Sbjct: 139 IDQGKLHLDAVQITALDEADQMADMGFLPQVRK-----LLRLTPAQGQRLLFSATL-DGD 192

Query: 445 ISKITEK----PA--GRKPIKTVIIPINR----IDEVIERLKVVLS----EGKKAYWICP 490
           ++K+ E+    P      P++  +  ++     + E   R +VVL     +GK   ++  
Sbjct: 193 VNKLVEQFLHDPVVHSTAPVQAAVDSMSHHLFFVGERPARNEVVLRIAARQGKTIMFMRT 252

Query: 491 Q--IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +  ++ + +   R+ +  +             +HG      +   ++ F +G+  +L+AT
Sbjct: 253 KHGVDRQVKKLRRAGINAYP------------LHGDKGQGARTRAIEGFADGSIPVLVAT 300

Query: 549 TVIEVGIDVVDASIIIIEN--AEHFGLAQLHQLRGRVGRGEEISSCILL 595
            +   GID+ D S+++  +  AEH   A LH+  GR  RG    + I L
Sbjct: 301 DIAARGIDIADVSLVVHVDPPAEHK--AYLHRA-GRTARGGAAGTVITL 346


>gi|149244076|ref|XP_001526581.1| eukaryotic initiation factor 4A [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032533|sp|A5DVM3|IF4A_LODEL RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|146448975|gb|EDK43231.1| eukaryotic initiation factor 4A [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 397

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 130/301 (43%), Gaps = 66/301 (21%)

Query: 299 QGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   G+GKT    I+    +   E   QA+I+AP   LA Q    I        + V   
Sbjct: 66  QAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHAS 125

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--YYK------LILVIVDEQHRFG 407
            G    +   +A +        I++GT     D I+  Y++       IL   DE    G
Sbjct: 126 IGGTSMSDDIEAFK----SGVQIVVGTPGRVFDMIERRYFRTDKVKMFILDEADEMLSSG 181

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            ++++    +L  + T   V+L++AT +P+          D+ ++T K     P++ ++ 
Sbjct: 182 FKEQIYNIFRLLPETT--QVVLLSAT-MPQ----------DVLEVTTKFMN-NPVRILV- 226

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------------------SNFRSVVE 505
              + DE+         EG K Y+I  ++E+ K                    N RS VE
Sbjct: 227 ---KKDELT-------LEGIKQYFINVEVEDYKFDCLVDLYDSISVTQAVIFCNTRSKVE 276

Query: 506 RF-NSLHEH-FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
              N L E  FT  ++ IH  +   +++++M  F++G+ ++LI+T ++  GIDV   S++
Sbjct: 277 FLTNKLREQKFT--VSAIHADLPQGERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 334

Query: 564 I 564
           I
Sbjct: 335 I 335


>gi|90577462|ref|ZP_01233273.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90440548|gb|EAS65728.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 432

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 117/290 (40%), Gaps = 39/290 (13%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA+Q    I +Y + T +    I G    + + K LE+       I++ T
Sbjct: 76  RALILAPTRELAEQIANNINEYAKYTDVNCTAIFGGKKMSTQEKRLEQ----GVDILVAT 131

Query: 383 HA-----LFQDSIQYYKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIP 432
                  +  +++    L  ++ DE  R     F    R+ L    T P  +L +AT   
Sbjct: 132 PGRLIEHMELNNVSLANLEFLVFDEADRMLDMGFIGAIRVILDDIRTKPQTMLFSATSSA 191

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +   L S    DI          KP +  + P N   + I  +   + E +K   +   I
Sbjct: 192 QMNSLAS----DIL--------HKPQRITVTPENSTADTIAHVVYPVDEDRKREMLSELI 239

Query: 493 EEKKESNFRSVV------ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCK 543
            +K   N++ V+      E  N L +          + HG  +   +   ++ FK G  +
Sbjct: 240 GKK---NWKQVLVFVNYKETANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKAR 296

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +++AT V   G+D+ +   ++  +        +H++ GR GR  +  + I
Sbjct: 297 VMVATEVAARGLDIQNLPYVVNYDMPFLAEDYVHRI-GRTGRAGQKGNAI 345


>gi|332200296|gb|EGJ14369.1| primosomal protein N' [Streptococcus pneumoniae GA47368]
          Length = 798

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q  +  
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--ESN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|323491944|ref|ZP_08097113.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323313802|gb|EGA66897.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 482

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 151/350 (43%), Gaps = 54/350 (15%)

Query: 273 PTKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ------- 323
           P+  QE AI  +L  QD+        +     G+GKT    + +   ++ G +       
Sbjct: 24  PSPIQEQAIPAVLNGQDV--------MAAAQTGTGKTAGFTLPILERLDNGTRVKGNHVR 75

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHIII 380
           A+I+ P   LA Q  E + KY++  ++   ++ G +   PQ      + ++  G + I++
Sbjct: 76  ALILTPTRELAAQVQENVFKYSRYQRLTSTVVFGGVKINPQ------MLKLRKG-SDIVV 128

Query: 381 GTHALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-T 434
            T         Q++I++ +L ++++DE  R      ++  +K       ++   P  R  
Sbjct: 129 ATPGRLLDLYQQNAIKFDQLEVLVLDEADRMLDMGFIRDIRK-------ILALLPAKRQN 181

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    +I ++  K     P++  + P N     IE+      + KKA  +   I  
Sbjct: 182 LLFSATFSQEIRELA-KGLVNNPVEISVSPENSTAVTIEQSIYPADKRKKAPMLVKLI-- 238

Query: 495 KKESNFRSVVERFNSLH-----EHFTS----SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            K+ +++ V+    + H      HF +    + A IHG  S   +   +  FK+G  ++L
Sbjct: 239 -KDGDWKQVLVFCRTKHGANRLAHFLNKEEITAAPIHGNKSQGARTRALADFKSGDVRVL 297

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +AT +   GID+     ++     +     +H++ GR GR  E+   I L
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPNVSEDYVHRI-GRTGRAGEVGKAISL 346


>gi|288555762|ref|YP_003427697.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288546922|gb|ADC50805.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 454

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 143/334 (42%), Gaps = 45/334 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT+ QE  I  I      KN    I Q   G+GKTL  L+ +   ++      QA+I AP
Sbjct: 27  PTEIQERLIPAI------KNGKDVIGQSQTGTGKTLSFLLPILDKIDPAKEEVQAIITAP 80

Query: 330 IGILAQQHYEFIKKYTQNT----QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
              LA Q ++ +KK  ++      I  +++ G      R +A+E +   Q HI++GT   
Sbjct: 81  TRELASQLFDELKKLLEHCPEEEMIHAKLLVGG---TDRNRAIEGL-KTQPHIVVGTAGR 136

Query: 386 FQD-----SIQYYKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             D     ++  Y   +++VDE  +     F        ++ A    +++ +AT IP  L
Sbjct: 137 IGDLMDDKALLVYTAAMLVVDEADQMLDMGFIADVDKVASRMAEDLQMMIFSAT-IPEKL 195

Query: 436 ---VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
              +   + D    ++  K      I+  I+P+   D++     V L++    Y+     
Sbjct: 196 QPFLKKYMNDPRHVQVEPKHVTASKIEHRIVPLRNRDKLT--FTVELAKSINPYFAIVFT 253

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
             K++++  +   +   L+      +  +HG +    ++ +M   K    + L+AT +  
Sbjct: 254 NTKEQADEVTAAMQEAGLN------VECLHGGLQPRQRKQIMKQVKEVKMQYLVATDLAA 307

Query: 553 VGIDVVDASIIIIENAEHFGLAQ-LHQLRGRVGR 585
            GIDV   + II     +FGL + L     RVGR
Sbjct: 308 RGIDVKGVTHII-----NFGLPKDLDFYVHRVGR 336


>gi|170750207|ref|YP_001756467.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656729|gb|ACB25784.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 506

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 153/371 (41%), Gaps = 69/371 (18%)

Query: 261 IAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM-- 314
           +AQ +LR +      +PT  Q  AI   ++       +  I Q   G+GKT    + +  
Sbjct: 9   LAQPVLRALSEAGYVAPTPIQAQAIPPAMEGRD----LCGIAQ--TGTGKTAAFALPILH 62

Query: 315 ------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
                   A   G + ++++P   LA Q  E    Y ++      ++ G +  + + +AL
Sbjct: 63  RLSLSDRRAPRRGCRVLVLSPTRELANQIAESFTDYGRHLSYTTTVVFGGVTISRQERAL 122

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLK-----LT 415
              A G   I++ T     D +    L L     +++DE  +    G    LK     L 
Sbjct: 123 ---APG-VDILVATPGRLIDLVDRRSLTLEGVEILVLDEADQMLDLGFIHALKRIVKMLP 178

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K  +   L  +AT +P+     ++  +    +T+      P++  + P+    E +E+ 
Sbjct: 179 EKRQS---LFFSAT-MPK-----NIAGLAAQYLTD------PVQVAVTPVATTAERVEQE 223

Query: 476 KVVLSEGKKAYWIC-----PQIEE-----KKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
            + +  G K   +      P IE      + +     VV   + +      + A IHG  
Sbjct: 224 VIFVHTGAKQALLGHILRDPAIERVLVFTRTKHGADRVVRGLDKVG----IAAAAIHGNK 279

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S   +E  + +FK+G+C++L+AT +   GIDV   S ++  +  +   + +H++ GR  R
Sbjct: 280 SQPQRERALAAFKDGSCRVLVATDIAARGIDVEGVSHVVNFDLPNVPESYVHRI-GRTAR 338

Query: 586 ----GEEISSC 592
               G  IS C
Sbjct: 339 AGADGLAISFC 349


>gi|145353388|ref|XP_001420996.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357383|ref|XP_001422899.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581232|gb|ABO99289.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583143|gb|ABP01258.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 452

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 125/313 (39%), Gaps = 34/313 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           I   + GSGKTL  ++     V A        G  A+++AP   LA Q    + K+  ++
Sbjct: 106 IAVAETGSGKTLAYVLPAIVHVNAQPVLEKGEGPIALVLAPTRELASQIELEVAKFAASS 165

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQ 403
           +I    +TG +P+  + KAL+    G + I + T     D          +   V++DE 
Sbjct: 166 EIKHACVTGGVPKGPQIKALK---SGGSEICVATPGRLIDFLDGGQTNLRRTSFVVLDEA 222

Query: 404 HR-----FGVQQRLKLTQKATAPHVLLMTAT------PIPRTLVLTSLGDIDISKITEKP 452
            R     F  Q R  + Q       LL TAT       + R  +     ++ +    +  
Sbjct: 223 DRMLDMGFEPQIRRIIAQTRCDRQTLLFTATWPVEVREVAREFIRNDPVEMRVGGAGDGL 282

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              K ++ ++  +   +    +L  +L E      I   +E K      ++V++      
Sbjct: 283 LASKNVEQIVHIVEDAEAKYAKLMDILEEEMDGSSILVFVETK------ALVDQLTRRLR 336

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                   +HG     +++ V++ F+     ++I+T V   G+DVV   +++  +     
Sbjct: 337 SEGWPALGLHGDKEQKERDWVLEEFRAARSPIMISTDVASRGLDVVGVKLVVNHDFPKSV 396

Query: 573 LAQLHQLRGRVGR 585
              +H++ GR GR
Sbjct: 397 EEYVHRI-GRTGR 408


>gi|254974450|ref|ZP_05270922.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-66c26]
 gi|255091842|ref|ZP_05321320.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
           107932]
 gi|255099944|ref|ZP_05328921.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-63q42]
 gi|255305833|ref|ZP_05350005.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
           43255]
 gi|255313577|ref|ZP_05355160.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-76w55]
 gi|255516261|ref|ZP_05383937.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-97b34]
 gi|255649358|ref|ZP_05396260.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-37x79]
 gi|260682530|ref|YP_003213815.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260686129|ref|YP_003217262.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|260208693|emb|CBA61492.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260212145|emb|CBE02789.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 375

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 139/323 (43%), Gaps = 45/323 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I +   G+GKTL  L+ +   +       Q +I++P   LA Q  E   K  ++  + + 
Sbjct: 48  IAEAQTGTGKTLAFLLPIFENISLDINDIQVLILSPTRELAIQITEEAMKLKESKDVSIL 107

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGV 408
              G      + K L+    G  H+II T     D     +I   KL   ++DE      
Sbjct: 108 AAYGGKDIGSQIKKLK----GNIHMIIATPGRLLDHLNRKTIDLSKLKTFVLDE-----A 158

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            Q L +  K     +L  T+    +TL  ++     I+   +K A R     V++ I + 
Sbjct: 159 DQMLLMGFKNEVEAILKETSNK-KQTLCFSAT----INSQVKKLAYRYTKNPVVVSIQKE 213

Query: 469 DEVIERLK---VVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFT---SS 517
           +  +  +K   V  ++ KK   +C  ++E  ++ F +++      R ++L E       +
Sbjct: 214 EITLNNIKQEVVETTDRKKLDALCKVLDE--DNPFMAIIFCRTKRRVDNLEEALAIRGYN 271

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGL 573
              +H  ++   +E +M SF+N   + LIAT V   G+D+   S I    + E  E +  
Sbjct: 272 CQKLHSDIAQSKRERIMKSFRNLDIQYLIATDVASRGLDISGVSHIYNYDLPETPEDY-- 329

Query: 574 AQLHQLRGRVGR-GEEISSCILL 595
             +H++ GR GR GEE  +C  +
Sbjct: 330 --IHRI-GRTGRAGEEGYTCAFI 349


>gi|159113843|ref|XP_001707147.1| ATP-dependent RNA helicase HAS1, putative [Giardia lamblia ATCC
           50803]
 gi|157435250|gb|EDO79473.1| ATP-dependent RNA helicase HAS1, putative [Giardia lamblia ATCC
           50803]
          Length = 547

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 141/380 (37%), Gaps = 69/380 (18%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV------------- 302
           + E    Q+I+   PFS T S    + + +  M  KN M RI +  +             
Sbjct: 16  DTENAKYQEIMTETPFSET-SLSPFLLEAVDAMGHKN-MTRIQEASIPVILSGRNMTAKA 73

Query: 303 --GSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
             GSGK+L  L+     +         G   +++ P   LA Q Y    +    T I V 
Sbjct: 74  HTGSGKSLAFLLPAIDLIHKANMKLHHGTGVIVLTPTRELALQLYNVATQLISATNITVG 133

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY------KLILVIVDEQH--- 404
           +  G      R+K    +  G A ++I T     D +         KL ++I+DE     
Sbjct: 134 LAIGG---TSRQKEANHLCKG-ASVVIATPGRLCDHLNNTPGFKTDKLFMLILDEADMLL 189

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            +G QQ L+         +L M   P  R +   S    D  K  E P      +T+I  
Sbjct: 190 EYGFQQELEA--------ILRMLPGPKLRQVCFFSATMSD--KCLEVPHMEVDKETLI-- 237

Query: 465 INRIDEVIERLKVVLSEGKKAYWICP-------------QIEEKKESNFRSVVERFNSLH 511
             RI+  ++      +  ++ Y ICP             +  +KK   F S  +     +
Sbjct: 238 --RINTDVKSSAATRAHFEQGYIICPPEQRFLLLYTFMKRRSDKKIIVFLSSRDSVEFYY 295

Query: 512 EHF----TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           E       +SI ++ G M    +    + F N    +L+AT V   G+D+     +I  +
Sbjct: 296 EFLRFIGMASILMLDGGMKQKQRMETYNKFCNAQSGVLLATNVAARGLDLPAIDYVIQFD 355

Query: 568 AEHFGLAQLHQLRGRVGRGE 587
                 + +H+  GR  RG+
Sbjct: 356 PPESVESYIHRA-GRACRGD 374


>gi|320653569|gb|EFX21674.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 457

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|241205862|ref|YP_002976958.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859752|gb|ACS57419.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 580

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 122/295 (41%), Gaps = 30/295 (10%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHGQA 376
           + +I+AP   L  Q  E +KK+ + + + + ++ G +    ++  LE+         G+ 
Sbjct: 98  RTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQLEKGTDILVATPGRL 157

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRT 434
             +I   A+   +++Y  L+L   D+    G    L+   K        +L +AT +P+ 
Sbjct: 158 LDLINRRAITLTAVRY--LVLDEADQMLDLGFVHDLRKIAKMVPKKRQTMLFSAT-MPKA 214

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI-DEVIERLKVVLSEGKKAYWICPQIE 493
           +      D+    + +      P+K  + P  +  D+V + +  V  +  K   +   + 
Sbjct: 215 IA-----DLAGEYLVD------PVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKSLT 263

Query: 494 EKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           E  +         +   E+     E+   S+A IHG  S   +E  + +F++G+ K LIA
Sbjct: 264 ENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTLIA 323

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           T V   GID+   S +   +      A +H++ GR  R       I    P  +K
Sbjct: 324 TDVAARGIDIPAVSHVYNYDLPEVPDAYVHRI-GRTARAGRDGIAIAFCAPDEAK 377


>gi|300705646|ref|XP_002995201.1| hypothetical protein NCER_102003 [Nosema ceranae BRL01]
 gi|239604102|gb|EEQ81530.1| hypothetical protein NCER_102003 [Nosema ceranae BRL01]
          Length = 421

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 137/329 (41%), Gaps = 57/329 (17%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           GKI Q +       P++ Q+ AI  I      K++   ++Q   G+GKT+  L+ +  ++
Sbjct: 56  GKILQALYDLGHEHPSQVQKLAIPAI------KSQNDVVIQSQSGTGKTIAFLVGLLTSI 109

Query: 319 E--AGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRKALERIAHG 374
           E   G QAVI++P   L  Q Y+   K T+  +I   + +   N  + H           
Sbjct: 110 EKGKGTQAVIISPTRELNMQIYDVTLKLTKYNEIETFLALKDKNFDKNH----------- 158

Query: 375 QAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
              II+GT       + +    +  L   ++DE         L  T   T    LL    
Sbjct: 159 -YEIILGTPGSVLSLVNRRLFDFKNLKFFVLDETDVL-----LDKTTMGTQTFRLLQAFK 212

Query: 430 PIPRTLVLTSLGDIDISKITEKPA----------GRKP--IKTVIIPINRIDEV--IERL 475
              +  +  +  D DI K  +  A            KP  IK   I ++  D+V  ++ L
Sbjct: 213 TAKKVFISATYND-DIKKTIDAYAPDCVKLYQKQNAKPDEIKLYHIDVSYKDKVRTLQSL 271

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +L+ G+   ++            ++ V++   +    ++S++I+HG +   +++  ++
Sbjct: 272 YELLTVGQVIVFVSK----------KATVKKLEKILVADSNSVSILHGDLLPEERDFTVE 321

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIII 564
            FK    K+L+ T V   G+D+   ++II
Sbjct: 322 KFKTADTKILVTTDVFSRGMDIPQVNLII 350


>gi|167624931|ref|YP_001675225.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167354953|gb|ABZ77566.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 436

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 153/361 (42%), Gaps = 42/361 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAVEAGGQ----A 324
           SPT  Q   I  IL   SQ+N    I     G+GKT   ++ ++ M +  E   +    A
Sbjct: 23  SPTPIQAKTIPVIL---SQRNL---IAAAQTGTGKTASFVLPILEMLSRSETQRKKRIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + I +Y ++  +    + G +    +R   ER+  G   I++ T  
Sbjct: 77  LILTPTRELAVQVEDNISQYGKHLALTSMAMYGGVDSKPQR---ERLIEG-VDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLT 438
              D     +I + +L ++++DE  R      ++   K       +M   P+ R TL+ +
Sbjct: 133 RLLDMYTQRAIHFDELEILVLDEADRMLDMGFIEDINK-------IMEKLPVDRQTLLFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     + ++      R PI+  +         IE+  V + + KK+  +   I+E    
Sbjct: 186 ATLSRQVKELARATIVR-PIEISVTHNTDNKPKIEQWLVTVDKDKKSALLSHLIQENNWQ 244

Query: 499 NFRSVVE------RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +E      +  S  E    +   IHG  S   +E ++  FK G   LLIAT +  
Sbjct: 245 QALIFIETKQGAAKLVSQLEKRGITAECIHGGRSQEIREQILADFKAGKIGLLIATGIAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ +  ++I  +  +     +H++ GR GR       + L    +SK+ +  L +++
Sbjct: 305 RGLDIDELPLVINYDLPYPADDYIHRI-GRTGRAGASGEAVAL----VSKDDFKNLCMIE 359

Query: 613 N 613
           +
Sbjct: 360 S 360


>gi|16129304|ref|NP_415859.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89108191|ref|AP_001971.1| ATP-dependent RNA helicase specific for 23S rRNA [Escherichia coli
           str. K-12 substr. W3110]
 gi|157160855|ref|YP_001458173.1| ATP-dependent RNA helicase DbpA [Escherichia coli HS]
 gi|170020291|ref|YP_001725245.1| ATP-dependent RNA helicase DbpA [Escherichia coli ATCC 8739]
 gi|170081022|ref|YP_001730342.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188494462|ref|ZP_03001732.1| ATP-independent RNA helicase DbpA [Escherichia coli 53638]
 gi|194436972|ref|ZP_03069071.1| ATP-independent RNA helicase DbpA [Escherichia coli 101-1]
 gi|238900578|ref|YP_002926374.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BW2952]
 gi|253773655|ref|YP_003036486.1| ATP-dependent RNA helicase DbpA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161422|ref|YP_003044530.1| ATP-dependent RNA helicase DbpA [Escherichia coli B str. REL606]
 gi|256022943|ref|ZP_05436808.1| ATP-dependent RNA helicase DbpA [Escherichia sp. 4_1_40B]
 gi|300927858|ref|ZP_07143420.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300948429|ref|ZP_07162531.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300954597|ref|ZP_07167042.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|301022682|ref|ZP_07186535.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|301647156|ref|ZP_07246977.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|307137985|ref|ZP_07497341.1| ATP-dependent RNA helicase DbpA [Escherichia coli H736]
 gi|312971541|ref|ZP_07785716.1| ATP-independent RNA helicase dbpA [Escherichia coli 1827-70]
 gi|331641910|ref|ZP_08343045.1| ATP-independent RNA helicase DbpA [Escherichia coli H736]
 gi|416881|sp|P21693|DBPA_ECOLI RecName: Full=ATP-independent RNA helicase dbpA
 gi|1742212|dbj|BAA14946.1| ATP-dependent RNA helicase specific for 23S rRNA [Escherichia coli
           str. K12 substr. W3110]
 gi|1787605|gb|AAC74425.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|157066535|gb|ABV05790.1| ATP-independent RNA helicase DbpA [Escherichia coli HS]
 gi|169755219|gb|ACA77918.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169888857|gb|ACB02564.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188489661|gb|EDU64764.1| ATP-independent RNA helicase DbpA [Escherichia coli 53638]
 gi|194423955|gb|EDX39943.1| ATP-independent RNA helicase DbpA [Escherichia coli 101-1]
 gi|238860048|gb|ACR62046.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BW2952]
 gi|242377119|emb|CAQ31847.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BL21(DE3)]
 gi|253324699|gb|ACT29301.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973323|gb|ACT38994.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           B str. REL606]
 gi|253977536|gb|ACT43206.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BL21(DE3)]
 gi|260449522|gb|ACX39944.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|299881170|gb|EFI89381.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|300318431|gb|EFJ68215.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300452053|gb|EFK15673.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300464143|gb|EFK27636.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|301074642|gb|EFK89448.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|309701644|emb|CBJ00951.1| ATP-independent RNA helicase [Escherichia coli ETEC H10407]
 gi|310336138|gb|EFQ01338.1| ATP-independent RNA helicase dbpA [Escherichia coli 1827-70]
 gi|315135984|dbj|BAJ43143.1| ATP-dependent RNA helicase DbpA [Escherichia coli DH1]
 gi|323937669|gb|EGB33937.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323942290|gb|EGB38461.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323962410|gb|EGB57993.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323973547|gb|EGB68732.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|331038708|gb|EGI10928.1| ATP-independent RNA helicase DbpA [Escherichia coli H736]
 gi|332343042|gb|AEE56376.1| ATP-independent RNA helicase DbpA [Escherichia coli UMNK88]
          Length = 457

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|330873518|gb|EGH07667.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330967687|gb|EGH67947.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 442

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 120/285 (42%), Gaps = 25/285 (8%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHI 378
           +A+++AP   LA Q +E I++Y ++  +      G +   PQ  + RK ++ +      +
Sbjct: 76  RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPGRL 135

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP---HVLLMTATPIP 432
           +       Q +I++ +L  +I+DE  R    G  + L+    A  P     LL +AT   
Sbjct: 136 L---DLYRQKAIKFSQLQTLILDEADRMLDLGFAEELRGIY-AVLPKQRQTLLFSATFSD 191

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             R L    L D    +++ +      +K  ++ +++      +  + +   KK  W   
Sbjct: 192 EIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKK----RKADLFIHLMKKHRWGQV 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +  K       +V+R   L  +       IHG      ++  +D FK+   K+L+AT V
Sbjct: 248 LVFAKTRVGVDQLVDRLQGLGLNADG----IHGDKPQATRQRALDRFKSNEVKILVATDV 303

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
              G+D+ D   ++  +        +H++ GR GR  +    I L
Sbjct: 304 AARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGQTGEAISL 347


>gi|327468980|gb|EGF14452.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330]
          Length = 523

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 131/335 (39%), Gaps = 38/335 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT          ++      QA+I+AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I        Q   LIL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLN 157

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G  + ++           +++  P  R  +L S    D  K       ++P    I   
Sbjct: 158 MGFLEDIES----------IISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK 207

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI----- 520
               E++++  + + E +K +    ++ + ++     V  R     +  T  + I     
Sbjct: 208 ELTTELVDQYYIRVKENEK-FDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRA 266

Query: 521 --IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +H+
Sbjct: 267 EGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 326

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + GR GR  +    I    P    N    L +++N
Sbjct: 327 I-GRTGRAGKSGQSITFVAP----NEMGYLQIIEN 356


>gi|324995328|gb|EGC27240.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678]
          Length = 523

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 131/335 (39%), Gaps = 38/335 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT          ++      QA+I+AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I        Q   LIL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLN 157

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G  + ++           +++  P  R  +L S    D  K       ++P    I   
Sbjct: 158 MGFLEDIES----------IISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK 207

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI----- 520
               E++++  + + E +K +    ++ + ++     V  R     +  T  + I     
Sbjct: 208 ELTTELVDQYYIRVKENEK-FDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRA 266

Query: 521 --IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +H+
Sbjct: 267 EGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 326

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + GR GR  +    I    P    N    L +++N
Sbjct: 327 I-GRTGRAGKSGQSITFVAP----NEMGYLQIIEN 356


>gi|312871977|ref|ZP_07732059.1| primosomal protein N' [Lactobacillus iners LEAF 2062A-h1]
 gi|311092554|gb|EFQ50916.1| primosomal protein N' [Lactobacillus iners LEAF 2062A-h1]
          Length = 796

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 68/135 (50%), Gaps = 7/135 (5%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q++A+  I Q + +KN    +L+G  GSGKT V L A+A  ++    A+++ P I +  Q
Sbjct: 264 QQAALDQINQQIVRKNAKTFLLEGITGSGKTEVYLHAIAECLKNNKSALMLVPEIALTPQ 323

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
              +   ++ ++    V ++   + +  +     RI + + H+++G  +     +    +
Sbjct: 324 MVNQVKSRFGKD----VAVLHSALSEGEKYDEWCRIRNQETHVVVGARSAIFAPLT--NI 377

Query: 396 ILVIVDEQHRFGVQQ 410
            L+I+DE+H    +Q
Sbjct: 378 GLIIIDEEHEASYKQ 392


>gi|310659161|ref|YP_003936882.1| primosome assembly protein pria [Clostridium sticklandii DSM 519]
 gi|308825939|emb|CBH21977.1| primosome assembly protein PriA [Clostridium sticklandii]
          Length = 748

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 95/448 (21%), Positives = 176/448 (39%), Gaps = 101/448 (22%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           I  +  + Q +  ++I  ++S KNR + +L+G  GSGKT + +  +   +E G  ++++ 
Sbjct: 202 IKHALNEEQNNTFEEISDELSTKNRPV-LLKGITGSGKTEIYMELIDKMIEEGKGSIVLV 260

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L  Q    I ++T   +  V ++  ++    R     +I +  A ++IG  +    
Sbjct: 261 PEISLTPQT---IARFTARFKAKVAVLHSHLSVGQRYDEWSKIENIDAPVVIGARSALFA 317

Query: 389 SIQYYKLILVIVDEQHRFGVQQRL-----------KLTQKATAPHVLLMTATPIPRTLVL 437
            ++   L L+++DE H    +  L           KL +   A  V+L +ATP       
Sbjct: 318 PVR--NLGLIVIDECHEDAYRSELNPKYDSVEVACKLNE-LQAVSVILGSATPKIEQYYK 374

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL---------KVVLSEGKKAYWI 488
               +  + ++  K A  KP+ ++ I   + D  +  L         K+ L+  KK   I
Sbjct: 375 AKNEEYKLVELN-KRANNKPLPSIEIIDMKEDAKLGNLSFLSFSLQTKISLAMKKKEQVI 433

Query: 489 ----------------CPQIEEKKESNFRSVVERFN-SLHEHFTSSIAIIH--------G 523
                           C  + + K  +      + N +L  H+ S     H        G
Sbjct: 434 LFLNRRGYANFLSCDSCGHVPKCKNCDISLTYHKKNQTLRCHYCSFEIPFHKSCESCNEG 493

Query: 524 RMSDI-----------------------DKESV---------MDSFKNGTCKLLIATTVI 551
            M DI                       DK++V         + +FK+    +LI T +I
Sbjct: 494 TMKDIGIGTERIEAEVRELFPEAKVFRMDKDTVSRKNSHSEILSAFKHTKGAILIGTQMI 553

Query: 552 EVGIDVVDASIIIIENAEHFGL------------AQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D    S++ + NA+  GL            + + Q+ GR GRG +I   +L+    
Sbjct: 554 GKGLDFPMVSLVGVINADQ-GLNAPDFRSYERMFSLIEQVGGRAGRG-DIDGKVLI--QT 609

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            S ++Y    +L +  +GF   E  L++
Sbjct: 610 FSPDNYVLKYILNHDFEGFYNEEIKLRE 637


>gi|257426220|ref|ZP_05602635.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428878|ref|ZP_05605272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257431487|ref|ZP_05607860.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257434197|ref|ZP_05610547.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257437110|ref|ZP_05613150.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282914927|ref|ZP_06322707.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|282925469|ref|ZP_06333123.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus C101]
 gi|293508999|ref|ZP_06667786.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510911|ref|ZP_06669610.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293547513|ref|ZP_06672188.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257270925|gb|EEV03098.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257274220|gb|EEV05737.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257277728|gb|EEV08398.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257280836|gb|EEV10981.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257283503|gb|EEV13630.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282312870|gb|EFB43271.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282321130|gb|EFB51461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|290919633|gb|EFD96706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291094703|gb|EFE24975.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466196|gb|EFF08723.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus M809]
          Length = 506

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 156/376 (41%), Gaps = 60/376 (15%)

Query: 249 KEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGK 306
           KE+GI  N       + L ++ F  PT  Q+ +I   LQ +        IL Q   G+GK
Sbjct: 5   KELGISDNT-----VQSLESMGFKEPTPIQKDSIPYALQGID-------ILGQAQTGTGK 52

Query: 307 TLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           T    I +   V  + G Q++I+AP   LA Q  E ++++++   + V  + G MP   +
Sbjct: 53  TGAFGIPLIEKVLGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQ 112

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQ 416
            KAL++       I++GT     D +          + LIL   DE    G    ++   
Sbjct: 113 IKALKK----GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIM 168

Query: 417 K---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
               A     +L +AT +P+ +         + +  + P   K IKT+   ++  D  IE
Sbjct: 169 DKIPAVQRQTMLFSAT-MPKAIQAL------VQQFMKSP---KIIKTMNNEMS--DPQIE 216

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-------AIIHGRMS 526
               ++ E +K +       +  +     V  R     +  TS++         +HG ++
Sbjct: 217 EFYTIVKELEK-FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDIT 275

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGR 582
              +  V+  FKN    +L+AT V   G+D+   S +    I ++ E +     H++ GR
Sbjct: 276 QAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY----THRI-GR 330

Query: 583 VGRGEEISSCILLYHP 598
            GR  +    +   +P
Sbjct: 331 TGRAGKEGIAVTFVNP 346


>gi|229844936|ref|ZP_04465073.1| hypothetical protein CGSHi6P18H1_04237 [Haemophilus influenzae
           6P18H1]
 gi|229812070|gb|EEP47762.1| hypothetical protein CGSHi6P18H1_04237 [Haemophilus influenzae
           6P18H1]
          Length = 613

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 143/356 (40%), Gaps = 61/356 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           +P+  Q+S I  +L      N +L + Q   GSGKT    + L+A     E   Q ++MA
Sbjct: 27  TPSPIQQSCIPHLLN----GNDVLGMAQ--TGSGKTAAFALPLLAQIDPSEKHPQMLVMA 80

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q     E   KY Q T+I+   + G      + +AL++     A +++GT   
Sbjct: 81  PTRELAIQVADACELFVKYAQGTRIVT--LYGGQRYDIQLRALKQ----GAQVVVGTPGR 134

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP---HVLLMTAT-PIP- 432
             D I+   L        +L   DE  R G    ++ T  A  P      L +AT P P 
Sbjct: 135 ILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVE-TVMAELPENHQTALFSATMPEPI 193

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL--------KVVLSEG 482
           R +    + D    KI         I      ++  R +E + R          ++ +  
Sbjct: 194 RRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIFART 253

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           K       ++ EK  + FRS                A ++G M+   +E  +D  +NG+ 
Sbjct: 254 KTGTLDITELLEK--NGFRS----------------AALNGDMTQQLREQTLDRLRNGSL 295

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +++AT V   GID+   S+++  +      + +H++ GR GR       +L   P
Sbjct: 296 DIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEP 350


>gi|222624792|gb|EEE58924.1| hypothetical protein OsJ_10575 [Oryza sativa Japonica Group]
          Length = 696

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 125/314 (39%), Gaps = 51/314 (16%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT   ++ M   +        E G   V+ AP   LA Q Y   KK+ +   + V 
Sbjct: 191 TGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVA 250

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G + +  + K L+        I+I T     D     +++ ++   +++DE  R   
Sbjct: 251 AVYGGVSKFDQFKELK----AGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFD 306

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKT 460
             F  Q R  + Q       LL +AT +P     L    L D              PI+ 
Sbjct: 307 LGFEPQIRSIVGQIRPDRQTLLFSAT-MPYKVERLAREILTD--------------PIRV 351

Query: 461 VIIPINRIDEVIERLKVVL-SEGKKAYWICPQ----IEEKKESNFRSVVERFNSLHEHFT 515
            +  +   +E I+++  VL S+ +K  W+  +    I++     F +   R + +     
Sbjct: 352 TVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLPGMIDDGDVLVFAAKKARVDEIESQLN 411

Query: 516 SS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                IA +HG      +   +  FK+G   +L+AT V   G+D+   SI  + N +   
Sbjct: 412 QRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAARGLDI--KSIKTVVNFDIAK 469

Query: 573 LAQLHQLR-GRVGR 585
              +H  R GR GR
Sbjct: 470 EMDMHIHRIGRTGR 483


>gi|218200270|gb|EEC82697.1| hypothetical protein OsI_27361 [Oryza sativa Indica Group]
          Length = 905

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 131/343 (38%), Gaps = 55/343 (16%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           ++I+Q + +    L ++    GSGK++   I      +    AV+++P+  L Q     +
Sbjct: 19  REIIQKVLEGRDCLVVMA--TGSGKSICYQIPPLVTKKT---AVVVSPLLSLMQDQVMSL 73

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
           K++   ++ +    T         K    + +      +   + F  ++Q   + L+ VD
Sbjct: 74  KQHGVKSEYLGSTQTDISVSGQAEKGAFDVLYMTPEKAVSLPSRFWSNLQAAGICLLAVD 133

Query: 402 EQH---RFGVQQRLKLTQK-------ATAPHV-LLMTATPIPRTLVLTSL---------G 441
           E H    +G   R +  Q           P V L  TAT   R  + TSL         G
Sbjct: 134 EAHCISEWGHDFRTEYKQLHMLRDLLVGVPFVALTATATQRVRGDIATSLTLRNPHIVVG 193

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D      +P     +K+    +  I+E+++ +    + G      C  I E ++    
Sbjct: 194 SFD------RPNLFYGVKSCNRSMAFINELVKDVSKNCTVGGSTIIYCTTIRETEQ---- 243

Query: 502 SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                   +HE   ++    +I HGRM +  +E    SF      +++AT    +GID  
Sbjct: 244 --------VHEALVAAGIKSSIYHGRMGNKAREESHRSFVRDEVLVMVATIAFGMGIDKP 295

Query: 559 DASIIIIENAEHFG----LAQLHQLRGRVGRGEEISSCILLYH 597
           D   +I     H+G    L   +Q  GR GR    S C L Y 
Sbjct: 296 DVRCVI-----HYGCPKSLESYYQESGRCGRDGLPSVCWLYYQ 333


>gi|168483275|ref|ZP_02708227.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae CDC1873-00]
 gi|172043297|gb|EDT51343.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae CDC1873-00]
          Length = 798

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q  +  
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--ESN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|157278040|ref|NP_001098120.1| Bloom syndrome helicase [Oryzias latipes]
 gi|140083401|gb|ABO84823.1| Bloom syndrome helicase [Oryzias latipes]
          Length = 1393

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 522 HGRMSDIDKESVMDSFKN-GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----L 576
           H  +SD D+E V   + N   C+++ AT    +GID  D   +I     H  L +     
Sbjct: 898 HAGLSDGDREYVQSKWINQDGCQVICATIAFGMGIDKPDVRYVI-----HASLPKSVEGY 952

Query: 577 HQLRGRVGRGEEISSCILLY 596
           +Q  GR GR  EIS CIL Y
Sbjct: 953 YQESGRAGRDGEISHCILFY 972


>gi|145353098|ref|XP_001420866.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581101|gb|ABO99159.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 404

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 133/320 (41%), Gaps = 59/320 (18%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT +  +A+   ++      Q ++++P   LA Q  +          + V 
Sbjct: 72  IAQAQSGTGKTSMISLALCQMLDTTSREVQGLVLSPTRELAVQTEKTALSLGNFMNVQVH 131

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVI--VDEQHR 405
              G        + L+   +G  HI+ GT     D I+   L      ILV+   DE   
Sbjct: 132 ACIGGRSIGDDIRKLD---YG-CHIVSGTPGRVFDMIKRRNLRTRGIKILVLDEADEMLN 187

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEK--PAGRKPIKTV 461
            G ++++    +   P   V+L++AT     L +TS    D  +I  K      + IK  
Sbjct: 188 KGFKEQIYDVYRYLPPETQVVLVSATLPNEVLEMTSKFMTDPMRILVKRDELTLEGIKQF 247

Query: 462 IIPINRIDEVIERLK------------VVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            + + R +   + L             +  +  KK  W+    E+ +++NF         
Sbjct: 248 FVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKKKVDWLT---EKMRQNNF--------- 295

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII---- 565
                  +++ +HG M   ++E +M+ F+ GT ++LI T V   GIDV   S++I     
Sbjct: 296 -------TVSAMHGDMPQKEREEIMNEFRGGTTRVLITTDVWARGIDVQQVSLVINYDLP 348

Query: 566 ENAEHFGLAQLHQLRGRVGR 585
            N E++    +H++ GR GR
Sbjct: 349 GNRENY----IHRI-GRSGR 363


>gi|293364891|ref|ZP_06611608.1| DNA replication factor Y [Streptococcus oralis ATCC 35037]
 gi|307703144|ref|ZP_07640090.1| primosomal protein N' [Streptococcus oralis ATCC 35037]
 gi|291316341|gb|EFE56777.1| DNA replication factor Y [Streptococcus oralis ATCC 35037]
 gi|307623219|gb|EFO02210.1| primosomal protein N' [Streptococcus oralis ATCC 35037]
          Length = 798

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++ +     V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGEK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVIIIDEEHEASYKQ 393


>gi|262274077|ref|ZP_06051889.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
 gi|262221887|gb|EEY73200.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
          Length = 618

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 124/315 (39%), Gaps = 39/315 (12%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITG 357
            G+GKT    + +   ++ G    QA++MAP   LA Q    +K   Q    + V  I G
Sbjct: 52  TGTGKTAAFSLPLLNKLDLGQRKPQAIVMAPTRELAIQVAAEMKALGQKIDGLKVLEIYG 111

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 + +AL       AHI++GT    +D I   +L L   DE H F + +  ++ + 
Sbjct: 112 GASIVDQMRAL----RAGAHIVVGTPGRVKDLINRERLQL---DEVHTFVLDEADEMLKM 164

Query: 418 ATAPHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                V  +M   P     VL S     + K       R+P +  +   NR  E +E   
Sbjct: 165 GFVDDVTWIMEQAPESAQRVLFSATMPPMVKEIVDRFLREPARIDVAGSNRTVEKVE--- 221

Query: 477 VVLSEGKKAYWICPQIE---------EKKESNFRSVVERFNSLHEHFTSSI-------AI 520
                  + +W+   +E         E +E++   V  R     E     +       A 
Sbjct: 222 -------QQFWVVKGVEKDEAMSRLLETEETDASIVFVRTRQDTERLADWLSARGFKAAA 274

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +    +E  ++  K G   +L+AT V+  G+DV   + +   +      + +H++ 
Sbjct: 275 LHGDIPQSLRERTVEHIKRGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRI- 333

Query: 581 GRVGRGEEISSCILL 595
           GR GR       ILL
Sbjct: 334 GRTGRAGRAGKAILL 348


>gi|239978905|ref|ZP_04701429.1| putative DEAD-box RNA helicase [Streptomyces albus J1074]
 gi|291450788|ref|ZP_06590178.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291353737|gb|EFE80639.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 538

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 131/330 (39%), Gaps = 37/330 (11%)

Query: 299 QGDVGSGKTL---VALIAMAAA--VEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A    EAG   A+++ P   LAQQ  + +  Y +   + +
Sbjct: 121 RGRTGSGKTLAFGLALLARTAGRRAEAGAPLALVLVPTRELAQQVTDALTPYAKALGLRM 180

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFG 407
             + G +    +  AL R       +++ T    +D       +  ++ + ++DE     
Sbjct: 181 ATVVGGLSLNKQASALRR----GTEVVVATPGRLKDLLDRGDCRLDQVAVSVLDEAD--- 233

Query: 408 VQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAG--RKPIKTVII 463
                ++T     P V  LL    P  + ++ ++  D +I ++     G    P+   + 
Sbjct: 234 -----QMTDMGFMPQVTALLDRTAPDGQRMLFSATLDRNIDRLVR---GYLSDPVVHSVD 285

Query: 464 PINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSSI 518
           P       +E   L V     KKA  +     + +   F   +   +RF           
Sbjct: 286 PSAGAVTTMEHHVLYVADDTDKKAVALRIAARDGRVIMFVDTKRSADRFAKRLLANGVRA 345

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           + +HG  S   +   ++ FKNG    L+AT V   GI V D  +++  +        LH+
Sbjct: 346 SALHGGRSQPQRNRTLEQFKNGQVTALVATNVAARGIHVDDLDLVVNVDPPTDHKDYLHR 405

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
             GR  R  E  S + L   P  K   TRL
Sbjct: 406 -GGRTARAGESGSVVTLVL-PEEKREMTRL 433


>gi|227888879|ref|ZP_04006684.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
           ATCC 33200]
 gi|227850572|gb|EEJ60658.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
           ATCC 33200]
          Length = 484

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 136/323 (42%), Gaps = 40/323 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + +   ++      QA+I+ P   LA Q  E + +  ++ +  V+
Sbjct: 42  IGQAQTGTGKTAAFGLPILQNLDKQHDSIQAIIIEPTRELAIQTQEELFRLGRDEKARVQ 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
           ++ G      + +AL++       I++GT     D     +I   K+  +++DE      
Sbjct: 102 VVYGGADIRRQIRALKQTPA----ILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLD 157

Query: 407 -GVQQRLK-LTQKATAPHVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIKTV 461
            G  Q ++ + + A++ H  L+ +  +P+ ++      + D +I KI  K          
Sbjct: 158 MGFIQDIESILKYASSKHQTLLFSATMPKPILRIGEKFMNDPEIVKIKGKE--------- 208

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS-- 516
            +  N ID+   R K    E +K   +C  I+ +       F     R + L     +  
Sbjct: 209 -LTANLIDQYFVRAK----ENEKFDILCRLIDVQNPDLAVIFGRTKRRVDELTRGLQARG 263

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + A IHG +S   + SV+  F+ G   +L+AT V   G+D+   S +   +      + 
Sbjct: 264 YNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDISGVSHVYNYDIPQDPDSY 323

Query: 576 LHQLRGRVGRGEEISSCILLYHP 598
           +H++ GR GR  +    +    P
Sbjct: 324 VHRI-GRTGRAGQNGMSVTFVTP 345


>gi|300972035|ref|ZP_07171795.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300309257|gb|EFJ63777.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|324011376|gb|EGB80595.1| DEAD/DEAH box helicase [Escherichia coli MS 60-1]
          Length = 432

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 129/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA ++ P   LA Q       + ++  NT+I+
Sbjct: 20  VQAKTGSGKTAAFGLGLLQQIDASLFQTQAFVLCPTRELADQVAGELRRLARFLPNTKIL 79

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 80  T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 133

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 134 LDMGFSDAIDDVICFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 193

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++         VV    KK              + +SV +
Sbjct: 194 QFYETSSKGKIPLLQRLLSLHQPSSC-----VVFCNTKK--------------DCQSVCD 234

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             N + +   S    +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 235 ALNEVGQSALS----LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 288

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 289 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 320


>gi|324993358|gb|EGC25278.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405]
 gi|327458716|gb|EGF05064.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057]
          Length = 523

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 131/335 (39%), Gaps = 38/335 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT          ++      QA+I+AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I        Q   LIL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLN 157

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G  + ++           +++  P  R  +L S    D  K       ++P    I   
Sbjct: 158 MGFLEDIES----------IISRVPEERQTLLFSATMPDAIKRIGVKFMKEPNHVKIAAK 207

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI----- 520
               E++++  + + E +K +    ++ + ++     V  R     +  T  + I     
Sbjct: 208 ELTTELVDQYYIRVKENEK-FDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKISGFRA 266

Query: 521 --IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +H+
Sbjct: 267 EGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 326

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + GR GR  +    I    P    N    L +++N
Sbjct: 327 I-GRTGRAGKSGQSITFVAP----NEMGYLQIIEN 356


>gi|323352691|ref|ZP_08087661.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
 gi|322121727|gb|EFX93473.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
          Length = 523

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 131/335 (39%), Gaps = 38/335 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT          ++      QA+I+AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I        Q   LIL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLN 157

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G  + ++           +++  P  R  +L S    D  K       ++P    I   
Sbjct: 158 MGFLEDIES----------IISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK 207

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI----- 520
               E++++  + + E +K +    ++ + ++     V  R     +  T  + I     
Sbjct: 208 ELTTELVDQYYIRVKENEK-FDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRA 266

Query: 521 --IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +H+
Sbjct: 267 EGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 326

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + GR GR  +    I    P    N    L +++N
Sbjct: 327 I-GRTGRAGKSGQSITFVAP----NEMGYLQIIEN 356


>gi|312882759|ref|ZP_07742493.1| primosome assembly protein PriA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369543|gb|EFP97061.1| primosome assembly protein PriA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 733

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 9/124 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +   +E G QA+++ P IG+  Q     I ++     + + +I
Sbjct: 221 LLEGITGSGKTEVYLNLIKPVLEQGKQALVLVPEIGLTPQT----ISRFRNRFNVPIMVI 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
              + +  R  A       +A I+IGT  ALF     +  L ++IVDE+H    +Q+  L
Sbjct: 277 HSGLNETERVTAWLSAYESRAGIVIGTRSALF---TPFDALGIIIVDEEHDASYKQQDSL 333

Query: 415 TQKA 418
              A
Sbjct: 334 RYHA 337


>gi|312086742|ref|XP_003145197.1| hypothetical protein LOAG_09622 [Loa loa]
 gi|307759639|gb|EFO18873.1| hypothetical protein LOAG_09622 [Loa loa]
          Length = 495

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 151/382 (39%), Gaps = 68/382 (17%)

Query: 302 VGSGKTLVALI----------AMAAAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            G GKT   LI          + A +VE      ++++P   LA+Q YE    ++     
Sbjct: 112 TGGGKTAAFLIPVINHISTQKSKAGSVENTYPYCIVVSPTKELAEQLYEDTLVFSAGLNC 171

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
              +  G +P   R+  + RI  G   I I T     D +Q   L L     ++ DE  R
Sbjct: 172 TAVLSFGEIP---RQDNIARIKEG-CDIFICTVGRLCDYLQNEVLELRHLHFLVFDEADR 227

Query: 406 FGVQQRLKLTQKATAPHVLLMTATP----IP--RTLVLTSLGDIDISKITEKPAGRKPIK 459
                   L Q     H L+    P    IP  R ++ ++    D++++  +       K
Sbjct: 228 --------LLQMEGFYHDLIENLLPKCRDIPNLRKMLFSATDYNDLAELKNEFLMPNATK 279

Query: 460 TVIIPINRID----------EVIERLKVVLSEGKKAYW------ICPQIEEKKESNFRSV 503
            V+  +N ++          EV ER KV+L   +  Y       +   I       F +V
Sbjct: 280 VVVGALNSVNPFIEQRVLKVEVHERRKVLLDLIQDMYLNMNDNPLSKTIIFVNTKRFATV 339

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +  + SL  +    I   HG ++   +   +++ ++G C ++++T V   G+D+   S I
Sbjct: 340 IASYLSLKGYKAYPI---HGNLTAKLRREAIEALQSGDCHIIVSTDVAARGLDIKGISHI 396

Query: 564 I---IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS----YTRLSVLKNTED 616
           I   I   E F L+ +H++ GR GR   +      + P +        Y  L + K    
Sbjct: 397 INYEIPKPESF-LSYVHRV-GRTGRVGNVGRATTFFAPSVDHGMTLILYKWLEMNKQAIP 454

Query: 617 GFL------IAEEDLKQRKEGE 632
            FL      I  EDL+++K  E
Sbjct: 455 AFLLEAKHRIDTEDLQRKKREE 476


>gi|308050173|ref|YP_003913739.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632363|gb|ADN76665.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 499

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 132/318 (41%), Gaps = 42/318 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQA-------VIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            G+GKT    + M   +  G +A       +++ P   LA Q  E ++ Y QN  +   +
Sbjct: 47  TGTGKTAGFTLPMLQNLSRGTRARSNRVRALVLTPTRELAAQVAESVQTYGQNLPLRSVV 106

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHA----LF-QDSIQYYKLILVIVDEQHRFGVQ 409
           + G +    + +AL R     A +++ T      LF Q+++++  L L+++DE  R    
Sbjct: 107 VFGGVSINPQMQALRR----GADVLVATPGRLLDLFSQNAVKFEDLELLVLDEADRMLDM 162

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG--RKPIKTVIIPINR 467
             ++  +K       ++   P  R  +L S       +I E   G   +P++  + P N 
Sbjct: 163 GFIRDIRK-------ILALLPKRRQNLLFSA--TFSGEIRELARGLLNQPVEVDVSPRNS 213

Query: 468 IDE-VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV---------ERFNSLHEHFTSS 517
               V++RL  V  +G+K   I   I   +E N+  V+          R     E     
Sbjct: 214 TARTVVQRLHPV-DKGRKPALISKLI---REHNWHQVLIFTRTKHGANRLAQKLERDGIQ 269

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            A IHG  S   +   +  FK+GT + L+AT +   G+D+     ++  +        +H
Sbjct: 270 AAAIHGNKSQGARTRALAGFKDGTVQALVATDIAARGLDIHQLPQVVNFDLPQVAEDYVH 329

Query: 578 QLRGRVGRGEEISSCILL 595
           ++ GR GR       I L
Sbjct: 330 RI-GRTGRAGAEGQAISL 346


>gi|297589855|ref|ZP_06948495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|297576983|gb|EFH95697.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
          Length = 517

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 156/376 (41%), Gaps = 60/376 (15%)

Query: 249 KEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGK 306
           KE+GI  N       + L ++ F  PT  Q+ +I   LQ +        IL Q   G+GK
Sbjct: 16  KELGISDNT-----VQSLESMGFKEPTPIQKDSIPYALQGID-------ILGQAQTGTGK 63

Query: 307 TLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           T    I +   V  + G Q++I+AP   LA Q  E ++++++   + V  + G MP   +
Sbjct: 64  TGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQ 123

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQ 416
            KAL++       I++GT     D +          + LIL   DE    G    ++   
Sbjct: 124 IKALKK----GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIM 179

Query: 417 K---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
               A     +L +AT +P+ +         + +  + P   K IKT+   ++  D  IE
Sbjct: 180 DKIPAVQRQTMLFSAT-MPKAIQAL------VQQFMKSP---KIIKTMNNEMS--DPQIE 227

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-------AIIHGRMS 526
               ++ E +K +       +  +     V  R     +  TS++         +HG ++
Sbjct: 228 EFYTIVKELEK-FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDIT 286

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGR 582
              +  V+  FKN    +L+AT V   G+D+   S +    I ++ E +     H++ GR
Sbjct: 287 QAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY----THRI-GR 341

Query: 583 VGRGEEISSCILLYHP 598
            GR  +    +   +P
Sbjct: 342 TGRAGKEGIAVTFVNP 357


>gi|167385227|ref|XP_001737255.1| ATP-dependent RNA helicase DDX55 [Entamoeba dispar SAW760]
 gi|165899983|gb|EDR26453.1| ATP-dependent RNA helicase DDX55, putative [Entamoeba dispar
           SAW760]
          Length = 499

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 168/392 (42%), Gaps = 59/392 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------A 324
           PT+ Q+  I   L      NR   I+Q   GSGKTL  LI +   ++   +         
Sbjct: 28  PTEVQKVVIPAFL------NRKDVIVQSQTGSGKTLSFLIPLFEIIKREREIIEKKEVYG 81

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I++P   LA Q Y+  K + ++  + + ++TG +  +     LE      A+II+GT  
Sbjct: 82  IIISPTRELAHQIYDITKVFCKHFNMTIGLLTGGIDIS----KLEEEMKKGANIIVGTAG 137

Query: 385 LFQDSI-------QYYKLILVIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPIP 432
             ++ I       ++  + ++I+DE  +    G  Q +   +          L +AT +P
Sbjct: 138 RIEEVITNKLFELEWNNVEVLILDEGDKMIEMGFSQSITHIICHLPKQRRTGLFSAT-MP 196

Query: 433 RTL---VLTSLGD---IDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKA 485
           + L   ++    +   I IS  T  P      +  IIP   +I  +I  LK   S+ KK 
Sbjct: 197 KELNKFIIAGCRNPYKIQISNDTLTPISLAN-EYCIIPYEIKIQTLIRILKD--SKDKKI 253

Query: 486 ---YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNG 540
                 C Q+      N+   + +     E +     I  IHG++  I+++ V+  F+  
Sbjct: 254 VIFVLTCDQV------NYIYNIIKILHQEEGYLKEKEIFSIHGKVKQINRDKVIKKFEES 307

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +LI T ++  G+D  + + II  +        +H++ GR  R   I    L++  PL
Sbjct: 308 LEAILICTDILARGMDFNNINYIIQYDPPQDPKTYIHRV-GRTARMGSIGHS-LIFLSPL 365

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
            K S+  L   KN +    I E+ +++ KE E
Sbjct: 366 EK-SFILLMEKKNVK----IIEKKIERDKEEE 392


>gi|149914601|ref|ZP_01903131.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b]
 gi|149811394|gb|EDM71229.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b]
          Length = 511

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 78/383 (20%), Positives = 153/383 (39%), Gaps = 60/383 (15%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------L 308
           +N+  K+ + +       PT  Q  AI   L+       +L I Q   G+GKT      +
Sbjct: 7   LNLNPKVLKAVEEAGYTDPTPIQAGAIPPALEGRD----ILGIAQ--TGTGKTASFTLPM 60

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           ++L+A   A     +++++ P   LA Q  E    Y++N ++   ++ G +    + K +
Sbjct: 61  LSLLARGRARARMPRSLVLCPTRELAAQVAENFDTYSKNLKLTKALLIGGVSFKEQDKLI 120

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++       ++I T     D  +  KL+L     ++VDE  R        +      P +
Sbjct: 121 DK----GVDVLICTPGRLLDHFERGKLLLTGVQIMVVDEADR--------MLDMGFIPDI 168

Query: 424 -LLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             + + TP  R T   ++    +I +IT     + P++  +       E IE+  V+   
Sbjct: 169 ERIFSLTPFTRQTFFFSATMAPEIERITNT-FLQNPVRIEVARQATASETIEQGVVMFKP 227

Query: 482 GKKAYWICPQIEEKKESNFRSVVER---------------------FNSLHEHFTSSIAI 520
            ++      + + +K    R++++                        SL +H   + A 
Sbjct: 228 SRRE-----RADSEKRDILRAIIDAEGEACTNAIVFCNRKVDVDIVSKSLKKHGYDA-AP 281

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG +    +   +D F+ G  K+L+A+ V   G+DV   S +   +        +H++ 
Sbjct: 282 IHGDLDQSQRTRTLDGFRAGDLKILVASDVAARGLDVPSVSHVFNYDVPGHAEDYVHRI- 340

Query: 581 GRVGRGEEISSCILLYHPPLSKN 603
           GR GR       +++  P   KN
Sbjct: 341 GRTGRAGRSGKAMMISGPRDDKN 363


>gi|308802996|ref|XP_003078811.1| putative RNA helicase (ISS) [Ostreococcus tauri]
 gi|116057264|emb|CAL51691.1| putative RNA helicase (ISS) [Ostreococcus tauri]
          Length = 693

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 65/329 (19%), Positives = 123/329 (37%), Gaps = 46/329 (13%)

Query: 302 VGSGKTL------VALIAMAAAVEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQN 347
            G GKTL      + L+A  + + A G+         V++AP   LA+Q +        +
Sbjct: 127 TGCGKTLAFVLPIIELMAKMSPMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNS 186

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV------- 400
                  + G  P   +   L         I+IGT    +D ++   L++  +       
Sbjct: 187 YGFKSLCVYGGAPYREQEMGL----RSGVDIVIGTPGRMKDHLERKTLMMTDLKFRVLDE 242

Query: 401 -DEQHRFGVQQRLKLTQKATAP-HVLLMTAT------PIPRTLVLTSLGDIDISKITEKP 452
            DE    G    ++   K++     LL +AT       I +  +  +   +D+    EK 
Sbjct: 243 ADEMLNMGFVDDVETILKSSGDVQTLLFSATLPSWVKDISKRFLKPNYSTVDLVG-DEKQ 301

Query: 453 AGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
                ++ +++P    +R+D V + ++     G +    C           R   E  ++
Sbjct: 302 KASGAVQHMLLPCQWSDRVDLVCDVIRSKAPGGGRVIVFC--------DTKRDCGELCDN 353

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +        +HG +S   +E V+  F+    ++L+AT V   G+D+    ++I     
Sbjct: 354 LQKEIPKGAKALHGDVSQSQREVVLSLFREDKFQVLVATDVAARGLDITGVELVIQCEPP 413

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                 +H+  GR GR       + L  P
Sbjct: 414 KDAETYIHR-SGRTGRAGATGISVTLCTP 441


>gi|110339425|gb|ABG67961.1| eukaryotic initiation factor 4A [Callinectes sapidus]
          Length = 432

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 120/291 (41%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +        +   
Sbjct: 100 IAQAQSGTGKTATFSISILQRIDVKSNETQALILAPTRELAQQIQKVVLALGDYMNVTCH 159

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G     + R+ + R+  G   II+GT     D I    L        +L   DE   
Sbjct: 160 ACIGG---TNLREDMRRLEMG-VQIIVGTPGRVYDMINRRVLNPKHIKMFVLDEADEMLS 215

Query: 406 FGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   +   V+L++AT +P           D+  +T K   R PI    I
Sbjct: 216 RGFKDQIYDVFRFLPSEVQVVLLSAT-MPS----------DVMDVTTKFM-RDPIT---I 260

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + + +  +E +K      +K  W    + +  E+          N R  V+        
Sbjct: 261 LVKKEELTLEGIKQFYVNVEKEDWKLETLCDLYETLTITQAVIFCNTRRKVDWLTDKMHQ 320

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 321 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 371


>gi|324021225|gb|EGB90444.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3]
          Length = 432

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 20  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 79

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 80  T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 133

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 134 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 193

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 194 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 245

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 246 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 288

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 289 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 320


>gi|94497195|ref|ZP_01303767.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
 gi|94423300|gb|EAT08329.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
          Length = 580

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 137/330 (41%), Gaps = 46/330 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
           ++    GSGKT+   +AMA  +    +         A+++AP   LA Q    ++     
Sbjct: 40  LVSAQTGSGKTVAFGLAMAGELLGDAERLPVAGLPLALVIAPTRELALQVSRELEWLYGA 99

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399
            +  +    G M  A  R+ L   +HG AHI++GT    +D ++   L        +L  
Sbjct: 100 ARARIATCVGGMDAAKERRNL---SHG-AHIVVGTPGRLRDHLERGALDLSAMRTAVLDE 155

Query: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            DE    G ++ L+  L         LL +AT +P+ +V        ++K  +K A R  
Sbjct: 156 ADEMLDMGFREDLEAILDSAPQERRTLLFSAT-MPKPIVT-------MAKRYQKDALR-- 205

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-NFRSVVERFNSLHEHFTS 516
           I T+       D   + L V  S+ + A     +  E + +  F +  +    LH   T 
Sbjct: 206 ISTMSEERGHGDISYQALTVAPSDIENAVVNLLRFHEAETAILFCATRDNVRHLHASLTE 265

Query: 517 ---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              ++  + G  S  ++   + + ++   ++ +AT V   GID+   S+++     H  L
Sbjct: 266 RGFAVVALSGEHSQNERNHALQALRDKRARVCVATDVAARGIDLPSLSLVV-----HVEL 320

Query: 574 ---AQLHQLR-GRVGRGEEISSCILLYHPP 599
              A+  Q R GR GR  +  + +L+   P
Sbjct: 321 PRDAETMQHRSGRTGRAGKKGTAVLIVPYP 350


>gi|320036789|gb|EFW18727.1| ATP-dependent RNA helicase rok1 [Coccidioides posadasii str.
           Silveira]
          Length = 730

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 23/153 (15%)

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           +S IA++H  +SD  +  VM  F+ G   +LI T ++  G+D    + ++  +  +   +
Sbjct: 531 SSRIAVLHSELSDSKRSDVMAGFRKGEIWVLITTDLLARGVDFRGINGVVNYDIPNSSAS 590

Query: 575 QLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
            +H++ GR GR G E    +  Y       +   +  +KN  +  + A E+L+  +EGE 
Sbjct: 591 YVHRV-GRTGRAGREGGVAVTFY-------TKEDIPYVKNIAN-VISASENLRGTEEGER 641

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           +       PK+L+      D+L  +++ D K +
Sbjct: 642 I-------PKWLL------DALPSLSKNDKKDL 661


>gi|260595969|ref|YP_003208540.1| primosome assembly protein PriA [Cronobacter turicensis z3032]
 gi|260215146|emb|CBA26945.1| Primosomal protein N' [Cronobacter turicensis z3032]
          Length = 733

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 9/121 (7%)

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQI 350
           N    +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ +    
Sbjct: 217 NFCAWLLAGVTGSGKTEVYLSVLENTLAQGKQALVLVPEIGLTPQT----IARFRERFNA 272

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQ 409
            VE++   +  + R  A  +   G+A I+IGT  ALF     +  L ++++DE+H    +
Sbjct: 273 PVEVLHSALNDSERLAAWLKAKSGEAAIVIGTRSALF---TPFKNLGVIVIDEEHDSSYK 329

Query: 410 Q 410
           Q
Sbjct: 330 Q 330


>gi|227833123|ref|YP_002834830.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262182386|ref|ZP_06041807.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227454139|gb|ACP32892.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 430

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 144/343 (41%), Gaps = 39/343 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P   QE+AI D L   S K+ + R   G  GSGKT    + M + + A G       + 
Sbjct: 24  TPFPIQEAAIPDAL---SGKDVLGR---GPTGSGKTFTFGLPMLSRLAASGVSRPAHPRG 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  + +++      + V  + G +   +  ++L R       +++ T  
Sbjct: 78  LVLAPTRELATQIQQRLEEPAAALGLRVLAVVGGVNINNHIRSLAR----PVDLLVATPG 133

Query: 385 LFQDSIQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
             QD I   KL      +  +DE  +      L   +K     +L +T     R L   +
Sbjct: 134 RAQDLIDQGKLFFDHVAIAALDEADQMADMGFLPQVRK-----LLKLTPEEGQRLLFSAT 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           L D +++K+ E+    +P+     P+    + +E   + +   +    +  ++  +K   
Sbjct: 189 L-DGEVNKLVEQFM-HEPVTHSTAPVEAAVDTMEHHLIFIGTREARNDVVLRLGARKGKT 246

Query: 500 F-----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+R          +   +HG      +   ++ F +G+  +L+AT +   G
Sbjct: 247 IMFMRTKHGVDRQAKKLRRVGINALPLHGDKGQGSRTKAIEGFADGSVPVLVATDIAARG 306

Query: 555 IDVVDASIIIIEN--AEHFGLAQLHQLRGRVGRGEEISSCILL 595
           ID+ D S+++  +  AEH   A LH+  GR  RG E  + + L
Sbjct: 307 IDIADVSLVVHVDPPAEHK--AYLHR-SGRTARGGESGTVVTL 346


>gi|218193167|gb|EEC75594.1| hypothetical protein OsI_12293 [Oryza sativa Indica Group]
          Length = 404

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 128/312 (41%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT +  +++   V       QA+I++P   LA Q    +        I V 
Sbjct: 72  IAQAQSGTGKTSMISLSVCQIVNTAVREVQALILSPTRELAAQTERVMLAIGDYINIQVH 131

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRF-- 406
              G        + LE   HG  H++ GT     D I+   L      L+I+DE      
Sbjct: 132 ACIGGKSIGEDIRKLE---HG-VHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLG 187

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V L++AT     L +TS       K    P        V I
Sbjct: 188 RGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTS-------KFMTDP--------VRI 232

Query: 464 PINRIDEVIERLKVVLSEGKKAYW----ICPQIEEKKESN---FRSVVERFNSLHEHFTS 516
            + R +  +E +K      +K  W    +C   +    +    F +   + + L E   S
Sbjct: 233 LVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRS 292

Query: 517 ---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++ +HG M   +++++M  F++G  ++LI T V   G+DV   S++I  +  +   
Sbjct: 293 NNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRE 352

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 353 LYIHRI-GRSGR 363


>gi|260800652|ref|XP_002595212.1| hypothetical protein BRAFLDRAFT_238703 [Branchiostoma floridae]
 gi|229280456|gb|EEN51224.1| hypothetical protein BRAFLDRAFT_238703 [Branchiostoma floridae]
          Length = 407

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 127/301 (42%), Gaps = 58/301 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAA--AVEAGG-----QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           I Q   G+GKT    +A+    A++AG      QA+++AP   LAQQ  + +        
Sbjct: 71  IAQAQSGTGKTATFAVAILQQLAMKAGNAGRNCQALVLAPTRELAQQIQKVVLALGDYMN 130

Query: 350 IIVEIITGNMPQAHRRKALERIAH------GQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                  G         ALE   H      G+ + +IG  AL    ++ +  +L   DE 
Sbjct: 131 ARCHACIGGTNVRSDIAALEEGVHIVVGTPGRVNDMIGRRALNTSDVKLF--VLDEADEM 188

Query: 404 HRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++    K   +   V+L++AT +P           D+ ++T K   R PI+ +
Sbjct: 189 LSRGFKDQIYDIFKFLPSDIQVILLSAT-MPS----------DVLEVTTKFM-RNPIRIL 236

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---------------R 506
           +          E L +   EG K ++I  + EE K      + E               +
Sbjct: 237 VKK--------EELTL---EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFCNTRRK 285

Query: 507 FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L E  +    +++ +HG M   +++ +M  F++G+ ++LI T ++  GIDV   S++
Sbjct: 286 VDWLTEKMSGRDFTVSAMHGDMDQRERDLIMREFRSGSSRVLITTDLLARGIDVQQVSLV 345

Query: 564 I 564
           I
Sbjct: 346 I 346


>gi|149011396|ref|ZP_01832643.1| primosome assembly protein PriA [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764386|gb|EDK71317.1| primosome assembly protein PriA [Streptococcus pneumoniae
           SP19-BS75]
          Length = 798

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEVAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|496902|emb|CAA56074.1| translation initiation factor [Homo sapiens]
          Length = 411

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 139/322 (43%), Gaps = 62/322 (19%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    I++   ++      QA+I+AP
Sbjct: 61  PSAIQQRAIKQII-----KGRDV-IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 114

Query: 330 IGILA---QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA   Q+    +  Y  N Q    I   N+ +  R+     + +GQ H++ GT    
Sbjct: 115 TRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRK-----LDYGQ-HVVAGTPGRV 167

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLV 436
            D I+   L        +L   DE    G ++++    +   +A  V+L++AT     L 
Sbjct: 168 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPSATQVVLISATLPHEILE 227

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEG 482
           +T+    D  +I  K      + IK   + + R +              I +  +  +  
Sbjct: 228 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 287

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K  W+    E+ +E+NF                +++ +HG M   ++ES+M  F++G  
Sbjct: 288 RKVDWLT---EKMREANF----------------TVSSMHGDMPQKERESIMKEFRSGAS 328

Query: 543 KLLIATTVIEVGIDVVDASIII 564
           ++LI+T V   G+DV   S+II
Sbjct: 329 RVLISTDVWARGLDVPQVSLII 350


>gi|16800283|ref|NP_470551.1| hypothetical protein lin1214 [Listeria innocua Clip11262]
 gi|16413688|emb|CAC96445.1| lin1214 [Listeria innocua Clip11262]
          Length = 470

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 131/314 (41%), Gaps = 39/314 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKT    I +A  V   E   QA+I+ P   LA Q         +  +I   
Sbjct: 40  VAKSQTGSGKTAAFAIPIAEQVVWEENKPQALIIVPTRELAMQVKTECTNIGRFKRIKAA 99

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
            I G  P A ++  L +    + HI++GT     D I+           L+L  VDE   
Sbjct: 100 AIYGQSPFAKQKLELSQ----KNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLS 155

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTL--VLTSLGD--IDISKITEKPAGRKPIK 459
            G   +++  L++       L  +AT +P  +  ++    D  + I   +EK     PI 
Sbjct: 156 MGFIDQVEDILSRLPKQRQNLFFSAT-LPEEMQDLIKRYQDNPMVIEMASEKT---NPIF 211

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            V +  +  ++ ++   V+++E   +  I           F +   + + L +      +
Sbjct: 212 HVEMQTDNKEKTLK--DVLITENPDSAII-----------FCNTKNQVDELTDLLDVKAS 258

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG +   D+   MD FK+G  + LIAT V   GIDV + S++I  +        +H++
Sbjct: 259 KIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRI 318

Query: 580 RGRVGRGEEISSCI 593
            GR GR  +    I
Sbjct: 319 -GRTGRAGKSGKAI 331


>gi|325912972|ref|ZP_08175345.1| primosomal protein N' [Lactobacillus iners UPII 60-B]
 gi|325477652|gb|EGC80791.1| primosomal protein N' [Lactobacillus iners UPII 60-B]
          Length = 796

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q++A+  I Q + +KN    +L+G  GSGKT V L A+A  ++    A+++ P I +  Q
Sbjct: 264 QQAALDQINQQIVRKNAKTFLLEGITGSGKTEVYLHAIAECLKNNKSALMLVPEIALTPQ 323

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
              +   ++ ++    V ++   + +  +     RI + + H+++G   A+F        
Sbjct: 324 MVNQVKSRFGKD----VAVLHSALSEGEKYDEWCRIRNQETHVVVGARSAIFAPLTN--- 376

Query: 395 LILVIVDEQHRFGVQQ 410
           + L+I+DE+H    +Q
Sbjct: 377 IGLIIIDEEHEASYKQ 392


>gi|321399813|emb|CAJ08508.2| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 615

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 142/332 (42%), Gaps = 54/332 (16%)

Query: 302 VGSGKTLVALI-------------AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
            GSGKT   LI             A     +A   A++++P   L+ Q YE  +K+T  T
Sbjct: 181 TGSGKTAAYLIPAINFMLVNNLNRAKPTNSQAAPSALVLSPTRELSIQIYEEGRKFTYRT 240

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQ 403
                ++ G     H+   L R       +++ T     D       +Y  +  +++DE 
Sbjct: 241 GFRCVVVYGGADPRHQIHELTR----GCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEA 296

Query: 404 HRF---GVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEK------ 451
            R    G + +++   +         +  P P   +TL+ ++    +I ++  +      
Sbjct: 297 DRMLDMGFEPQIRAIVQGPD------SDMPPPGERQTLLYSATFPKEIQQMAREFLYHHH 350

Query: 452 --PAGR--KPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
               GR     + +   +  ++++ +R  L  VL E  +   +   +E+K+++++   +E
Sbjct: 351 FLQVGRVGSTTENITQDVRWVEDMDKRGCLLEVLKE-HQGERVLVFVEKKRDADY---LE 406

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           R+        SSI   HG     ++E  +D FK+G C++L+AT V   G+D+ + ++++ 
Sbjct: 407 RYLRQSRIPCSSI---HGDRVQREREEALDIFKSGVCRVLVATDVASRGLDIPNVAVVVQ 463

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +        +H++ GR GR  +  + I  ++
Sbjct: 464 YDLPSNIDDYVHRI-GRTGRAGKRGTAISFFN 494


>gi|302387031|ref|YP_003822853.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302197659|gb|ADL05230.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 485

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 138/350 (39%), Gaps = 33/350 (9%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--- 319
           K L+ + +  PT+ Q   I   L+    KN ++  ++   GSGKT    I +   +E   
Sbjct: 15  KALKGLGYDIPTEVQARVIPAALE----KNDLM--VKAQTGSGKTAAYAIPICELIEWLE 68

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              QA+I+ P   LA Q  E      +  ++    I G    +  +  L++    + H++
Sbjct: 69  NKPQALILTPTRELAVQVKEDFTNIGRFKRLKAAAIYGRHSFSMEKAELKQ----KTHVV 124

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           +GT     D I+   L L     +++DE  R      +K  +        +M   P+ R 
Sbjct: 125 VGTPGRVMDHIKKGTLPLTKINYLVIDEADRMLDMGFIKQVEA-------IMKELPMERM 177

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIE 493
            +L S       K       R PI   +   N     I+  L  V  E K        I 
Sbjct: 178 TMLFSATMPQEVKNMSLDYMRDPINIDVSEANITTSDIDHFLYYVKEEDKFELLNDVMIV 237

Query: 494 EKKESN--FRSVVERFNSLHE---HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           EK +S   F S  +R + + E   +F      +HG M   D+ S +  FK G  + LIAT
Sbjct: 238 EKPDSCMIFCSTKDRVDIVCERLKNFGYPCNKMHGGMEQADRLSSIKGFKRGEYRYLIAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +   GID+   S++I  +        +H+  GR GR  +    +    P
Sbjct: 298 DLAARGIDIETISMVINYDIPLDKENYVHR-PGRTGRAGQKGKAVSFLDP 346


>gi|257887598|ref|ZP_05667251.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,141,733]
 gi|257823652|gb|EEV50584.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,141,733]
          Length = 599

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 98/236 (41%), Gaps = 46/236 (19%)

Query: 386 FQDSIQYYKLILVIVDEQH---RFG-------VQQRLKLTQKATAPHVLLMTATPIPRTL 435
           F  ++  + + ++ +DE H   ++G       +Q   +L Q    P ++ +TAT   +  
Sbjct: 119 FIQAMNRWNVCMIAIDEAHCISQWGHDFRPSYLQMAKQLNQLPNRPVIVALTATATIQVA 178

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER----LKVVLSEGKKAYWICPQ 491
                   DI ++ + P G           N I    ER     +VV  + K+ Y +   
Sbjct: 179 A-------DIKRLLKIPDG-----------NHIQTGFERENLRFQVVKDQKKEQYLVEYL 220

Query: 492 IEEKKESNF-----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              K +S       R  V+R   L + F  SI   HG +++ ++ ++ ++F     +L++
Sbjct: 221 KINKNQSGIIYAATRKEVDRIYHLLKKFGFSIGRYHGGLNENERTAMQEAFLYDRLQLIV 280

Query: 547 ATTVIEVGIDVVDASIIIIENAEHF----GLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT    +GI+  +   +I     H+     L   +Q  GR GR    S  ILL+ P
Sbjct: 281 ATNAFGMGINKSNVCFVI-----HYQIPGSLEAYYQEAGRAGRDGLSSEAILLFAP 331


>gi|225719342|gb|ACO15517.1| Eukaryotic initiation factor 4A-III [Caligus clemensi]
          Length = 403

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 145/342 (42%), Gaps = 61/342 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ +IK IL     K R + I Q   G+GKT    I++  +++      Q ++++P
Sbjct: 53  PSAIQQRSIKPIL-----KGRDV-IAQAQSGTGKTATFSISILQSIDTSLRETQCLVLSP 106

Query: 330 IGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
              LA Q  + +       N Q    I   N+ +  R+     + +GQ H++ GT     
Sbjct: 107 TRELAVQIQKVLLALGDYMNVQCHACIGGTNLGEDIRK-----LDYGQ-HVVSGTPGRVY 160

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVL 437
           D I+   L        +L   DE    G ++++    +   P   + L++AT     L +
Sbjct: 161 DMIRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQICLISATLPHEILEM 220

Query: 438 TSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK------------VVLSEGK 483
           TS    D  +I  K      + IK   + + R +   + L             +  +  +
Sbjct: 221 TSKFMADPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKR 280

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           K  W+    E+ +E+NF                +++ +HG M   +++++M  F++G  +
Sbjct: 281 KVDWL---TEKMREANF----------------TVSSMHGDMPQKERDAIMKEFRSGQSR 321

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +LI T V   GIDV   S++I  +  +     +H++ GR GR
Sbjct: 322 VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI-GRSGR 362


>gi|134296504|ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134139661|gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 512

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 122/299 (40%), Gaps = 47/299 (15%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQ-AHRRKALERIAHGQAHI 378
           +A+I+ P   LA Q    +  Y ++T +   ++ G +   PQ A  R+ +E        I
Sbjct: 111 RALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQMAELRRGVE--------I 162

Query: 379 IIGTHALFQDSIQYY-----KLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLM 426
           +I T     D +Q       ++ ++++DE  R         +Q+ L L  K      LL 
Sbjct: 163 LIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKER--QTLLF 220

Query: 427 TATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-K 483
           +AT  P  + L  T L +    ++    +    +  ++  +   D+    ++++   G K
Sbjct: 221 SATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRGRGLK 280

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +    C         N +    R     E      + IHG  S I++   +D+FK G  +
Sbjct: 281 QVIVFC---------NSKIGASRLARNLERDGVVASAIHGDKSQIERMQALDAFKRGEIE 331

Query: 544 LLIATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            L+AT V   G+D+ +   +I      NAE +    +H++ GR GR       + L  P
Sbjct: 332 ALVATDVAARGLDIAELPAVINFDLPFNAEDY----VHRI-GRTGRAGATGDALSLCSP 385


>gi|5059030|gb|AAD38876.1|AF110008_1 p68 RNA helicase [Molgula occulta]
          Length = 619

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 129/322 (40%), Gaps = 43/322 (13%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  ++     + A        G   +++ P   LAQQ  +   ++  ++ I   
Sbjct: 195 TGSGKTLGFILPAIVHINAQPYLDPGDGPIVLVLCPTRELAQQVQQVAAEFGSSSHIKNT 254

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G   +  + + LER       I+I T     D ++  K  L     +++DE  R   
Sbjct: 255 CVYGGASKGPQLRDLER----GCEIVIATPGRLIDFLEQKKTNLRRCTYLVLDEADRMLD 310

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS--LGDIDISKI--TEKPAGRKPIK 459
             F  Q R  ++Q       L+ +AT       L S  LGD    ++  T   A    ++
Sbjct: 311 MGFEPQIRKIISQIRPDRQTLMWSATWPKEVSKLASDFLGDFVHVQVGSTGLSANHNILQ 370

Query: 460 TVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            V +  P+ + ++++  ++ ++ E            E K   F     R + L       
Sbjct: 371 IVDVCQPMEKDEKLMRLMEEIMGE-----------SENKTIIFTETKRRCDELTRTMRRD 419

Query: 518 ---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 IHG  S  +++ V++ F++G   +L+AT V   G+DV D   +I  +       
Sbjct: 420 GWPAMCIHGDKSQPERDWVLNEFRSGRSPILVATDVASRGLDVHDVKFVINYDFPSQCED 479

Query: 575 QLHQLRGRVGRGEEISSCILLY 596
            +H++ GR  R E+  +    +
Sbjct: 480 YVHRI-GRTARAEQKGTAYTFF 500


>gi|150017632|ref|YP_001309886.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904097|gb|ABR34930.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 481

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 132/321 (41%), Gaps = 28/321 (8%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    I +   V   E   QA+++ P   LA Q  E      +  +I   
Sbjct: 45  VVKSKTGSGKTASYAIPICQLVDWEENKPQALVITPTRELAIQVKEDFFNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF-- 406
            I G      + K L++    + HI++GT     D I+       K+  +I+DE      
Sbjct: 105 AIYGKSSFYDQEKELKQ----KTHIVVGTPGRIIDHIEKGTFDLSKIKYLIIDEADEMLN 160

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTV 461
              V+Q   + +  +   V ++ +  +P+   TL    + D    +I E+      I   
Sbjct: 161 MGFVEQIETIIKSLSKERVTMLLSATMPKDIETLCNKYMKDPIHIEIEEQNKAADNICQE 220

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
              +N ++++     + + E   +  I    ++K +  ++ + +               I
Sbjct: 221 RYNVNELNKIDLLRDITILENPDSCMIFCNTKQKVDEVYKELAK--------LQYDCRKI 272

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG M   D+  VM++FK G  + LIAT V   GID+ + + +I  +      + +H++ G
Sbjct: 273 HGGMEQSDRLRVMNNFKLGYFRYLIATDVAARGIDIDNITHVINYDIPEDKESYVHRI-G 331

Query: 582 RVGRGEEISSCILLYHPPLSK 602
           R GR  ++   I       SK
Sbjct: 332 RTGRAGKMGRAITFVTQNESK 352


>gi|332372808|gb|AEE61546.1| unknown [Dendroctonus ponderosae]
          Length = 423

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 125/293 (42%), Gaps = 46/293 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++      QA+I+AP   LAQQ  + +            
Sbjct: 91  IAQAQSGTGKTATFSISILQQIDTTVRECQALILAPTRELAQQIQKVVIALGDFMSAQCH 150

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-------QYYKL-ILVIVDEQHR 405
              G     + R+ + ++  G  H+++GT     D I       Q+ K+ +L   DE   
Sbjct: 151 ACIGG---TNVREDMRKLDTG-VHVVVGTPGRVFDMINRRALRPQHIKMFVLDEADEMLS 206

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    K       V+L++AT  P  L +T            K   R PI+   I
Sbjct: 207 RGFKDQIHDVFKTLNADVQVILLSATMPPDVLDVT------------KSFMRAPIR---I 251

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFN-SLHE 512
            + + +  +E +K      +K  W    + +  ++          N R  V+    S+H+
Sbjct: 252 LVKKEELTLEGIKQFFVYVEKEDWKLETLCDLYDTLSITQAVIFCNTRRKVDWLTESMHK 311

Query: 513 -HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             FT  ++ +HG M   +++ +M  F+ G+ ++LI T ++  GIDV   S++I
Sbjct: 312 KDFT--VSAMHGDMEQKERDVIMRQFRTGSSRVLITTDLLARGIDVQQVSLVI 362


>gi|322389137|ref|ZP_08062700.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           903]
 gi|321144179|gb|EFX39594.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           903]
          Length = 523

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 137/337 (40%), Gaps = 42/337 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    +     ++      QA+++AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGLPTLEKIDVDNTVIQALVIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I+   L        IL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLDHIETLILDEADEMLN 157

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  + ++  +++       LL +AT +P      ++  I +  + E      P    I 
Sbjct: 158 MGFLEDIEAIISRVPETRQTLLFSAT-MPE-----AIKRIGVQFMKE------PEHVKIA 205

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--- 520
                 +++++  + + EG+K +    ++ + ++     V  R     +  T  + I   
Sbjct: 206 AKELTTDLVDQYYIRVKEGEK-FDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGF 264

Query: 521 ----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +
Sbjct: 265 RAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYV 324

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           H++ GR GR  +    I    P    N    L +++N
Sbjct: 325 HRI-GRTGRAGKTGQSITFVSP----NEMGYLQIIEN 356


>gi|229065102|ref|ZP_04200395.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH603]
 gi|228716131|gb|EEL67850.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH603]
          Length = 481

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 132/324 (40%), Gaps = 42/324 (12%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+++ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G  P A ++  L++    + HI++GT     D I+   L L     +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLN 160

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
              + Q   +  +     + ++ +  +P+ +   S   +D     E       IK   I 
Sbjct: 161 MGFIDQVEAIIDELPKKRMTMLFSATLPKDVEKLSRTYMDSPTHIE-------IKATGIT 213

Query: 465 INRIDEVI------ERLKVVLS----EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            ++I+  +      E+L ++      E   +  I  + +E  +  F+ + +R N   +  
Sbjct: 214 TDKIEHTLFEMREEEKLSLLKDITTIENPDSCIIFCRTQENVDHVFQQL-KRINYPCDK- 271

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 IHG M   D+  VMD F+ G  + L+AT V   GID+ + + +I  +      +
Sbjct: 272 ------IHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKES 325

Query: 575 QLHQLRGRVGRGEEISSCILLYHP 598
            +H+  GR GR       I    P
Sbjct: 326 YVHRT-GRTGRAGNNGKAITFMTP 348


>gi|162149460|ref|YP_001603921.1| ATP-dependent RNA helicase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161788037|emb|CAP57641.1| putative ATP-dependent RNA helicase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 429

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 133/319 (41%), Gaps = 45/319 (14%)

Query: 302 VGSGKT------LVALIAMAA--AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            G+GKT      L+  +AMA   A + G + +++AP   L  Q  +    + ++    V 
Sbjct: 51  TGTGKTAAFALPLLHRLAMAPRPAPKGGARVLVLAPTRELVSQIADGFTSFGRHQPPSVT 110

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            I G + Q H+  AL+        II+       D I        Q   L+L   D+   
Sbjct: 111 TIFGGVSQFHQVNALK----AGVDIIVAAPGRLLDLIDQGLCDLSQLEALVLDEADQMLD 166

Query: 406 FGVQQRLKLTQKATAP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            G  + ++    AT P   H +L +AT +P++          I+ + E    R P K  I
Sbjct: 167 MGFARPIERI-VATLPKDRHTVLFSAT-MPKS----------IAALAESLL-RDPAKVEI 213

Query: 463 IPINR-IDEVIERLKVVLSEGKKAYWI----CPQIEEKKESNF-RSVVERFNSLHEHFTS 516
            P +  +D + + +  V +  KKA  +     P I +       +++     +       
Sbjct: 214 APPSTTVDRIEQSVMFVDAADKKAALLSMLRTPGIGQAVVFTLQKNIANEVCAFITEAGI 273

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           +   +HG  S   +E  +D+F+ GT ++L+AT +   GIDV   + +   +      + +
Sbjct: 274 TAEALHGNKSQGQRERALDAFRAGTAQVLVATDIAARGIDVDTVTHVFNHDLPSLPESYV 333

Query: 577 HQL--RGRVGR-GEEISSC 592
           H++   GR GR G  I+ C
Sbjct: 334 HRIGRTGRAGRNGFAITLC 352


>gi|156975530|ref|YP_001446437.1| ATP-dependent DNA helicase RecQ [Vibrio harveyi ATCC BAA-1116]
 gi|156527124|gb|ABU72210.1| hypothetical protein VIBHAR_03262 [Vibrio harveyi ATCC BAA-1116]
          Length = 641

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 137/331 (41%), Gaps = 46/331 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            GSGK+L   +    A +     ++++P+  L +    F+    Q+  I    I  +  +
Sbjct: 42  TGSGKSLCYQLP---ATQLPHLTLVISPLLALMKDQLSFL----QSRGIAAASIDSSQSR 94

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQR-- 411
              ++ +  + +G   I++ +     +  F++ I+   L L++VDE H    +G   R  
Sbjct: 95  EETQQVMAGVKNGHIKILMISVERLKNERFREFIRQIPLSLMVVDEAHCISEWGHNFRPD 154

Query: 412 -LKLTQ---KATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
            LKL Q   +   P  LL+TAT  P  +  + S  DI    IT     R  +   ++P +
Sbjct: 155 YLKLPQYQRELNIPQTLLLTATATPAVIEDMQSKFDIAGENITVTGFYRSNLDISVVPCD 214

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
             ++  +   ++ +  K    +    ++  E    S++    + H +         G  S
Sbjct: 215 EENKQTQLNDIIAAAPKLPSIVYVTQQQTAEQVASSLIRLGINAHAYHA-------GMKS 267

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGR 582
           DI +E +   F       ++AT    +G+D  D   +I     HF L +      Q  GR
Sbjct: 268 DI-REKIQQQFMTSQIDCIVATIAFGMGVDKSDIRRVI-----HFDLPKSIENYAQEIGR 321

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            GR  + S CILL        + + L+VL+N
Sbjct: 322 AGRDGQRSECILL-------GNTSGLTVLEN 345


>gi|6468270|emb|CAB61567.1| ATP-dependent RNA helicase [Candida albicans]
          Length = 399

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 134/324 (41%), Gaps = 67/324 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I M   ++      QA+I++P   LA Q    +        I   
Sbjct: 67  IAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVMHLGDYMNIHTH 126

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
              G        K L++   GQ  I+ GT     D     ++Q   + ++I+DE      
Sbjct: 127 ACIGGKNVGEDVKKLQQ---GQ-QIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFT 182

Query: 407 -GVQQRLKLTQKATAPHVLLMT-ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            G ++++    K   P V ++  +  +PR ++  +      SK T  P            
Sbjct: 183 KGFKEQIYEIYKHLPPSVQVVVVSATLPREVLEMT------SKFTTDP------------ 224

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL-------------- 510
              +  +++R ++ LS  K+ Y  C    E+++  F ++ + +++L              
Sbjct: 225 ---VKILVKRDEISLSGIKQYYVQC----EREDWKFDTLCDLYDNLTITQAVIFCNTKLK 277

Query: 511 ---------HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
                     ++FT  +  +HG M   +++S+M+ F+ G  ++LI+T V   GIDV   S
Sbjct: 278 VNWLADQMKKQNFT--VVAMHGDMKQDERDSIMNDFRRGNSRVLISTDVWARGIDVQQVS 335

Query: 562 IIIIENAEHFGLAQLHQLRGRVGR 585
           ++I  +        +H++ GR GR
Sbjct: 336 LVINYDLPTDKENYIHRI-GRSGR 358


>gi|68060631|ref|XP_672302.1| DNA helicase [Plasmodium berghei strain ANKA]
 gi|56489255|emb|CAI03043.1| DNA helicase, putative [Plasmodium berghei]
          Length = 376

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 9/79 (11%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LH 577
           H  +++  ++ + + + NGT K+L+AT    +GID  D S II     HF L +     +
Sbjct: 237 HAGLTNNARKQIQEKWINGTIKILVATIAFGMGIDRKDVSYII-----HFNLPKSIENYY 291

Query: 578 QLRGRVGRGEEISSCILLY 596
           Q  GR GR   I+ C L Y
Sbjct: 292 QESGRAGRNGNIAFCYLYY 310


>gi|54294961|ref|YP_127376.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila str. Lens]
 gi|53754793|emb|CAH16280.1| hypothetical protein lpl2040 [Legionella pneumophila str. Lens]
          Length = 468

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 142/317 (44%), Gaps = 51/317 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKK---YTQNTQI 350
           I Q   GSGKT    +++   ++      QA+++ P   LA+Q  + I++   +  N +I
Sbjct: 52  IAQAKTGSGKTAAFALSLLNNLKISFFAVQALVLCPTRELAEQVSQAIRRLACFMPNVKI 111

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR 405
           I   ++G +P    +  L+ + HG AHII+GT       L   S+   ++  +I+DE  R
Sbjct: 112 IN--LSGGIPM---QPQLDSLRHG-AHIIVGTPGRILKHLKNTSLDLSQVKALILDEADR 165

Query: 406 F---GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTV 461
               G    +K           +++  P  R TL+ ++    +I +++++         V
Sbjct: 166 MLDMGFFDDIKN----------IISVCPKQRQTLLFSATYPEEIKRLSKQFMKDPKEVHV 215

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--------SNFRSVVERFNSLHEH 513
           + P   ID  IE+    +S   + + +   +    +        +  +  +E  + L   
Sbjct: 216 VTPPEEID--IEQHFYEVSRHAQKFPLLKSLLLHYQPVSVLIFCNTKQQTIEVTDQLINE 273

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             S+IA+ +G M  I+++  +  F N +C +L+AT V   G+D+ + S +I     +F L
Sbjct: 274 GFSAIAL-NGDMEQIERDLAVLRFANKSCSILVATDVAARGLDIKELSAVI-----NFDL 327

Query: 574 AQLHQLR----GRVGRG 586
           A  H +     GR GR 
Sbjct: 328 AFDHDVHIHRIGRTGRA 344


>gi|45358020|ref|NP_987577.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis S2]
 gi|44920777|emb|CAF30013.1| Probable ATP dependent RNA helicase [Methanococcus maripaludis S2]
          Length = 538

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 144/351 (41%), Gaps = 51/351 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +PT  QE AI  +++      +   + Q   G+GKT    I +   ++      QA+I+A
Sbjct: 24  NPTPIQEQAIPILIE-----GKRDIVGQAQTGTGKTAAFGIPILETIDEHSRNTQALILA 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I     + ++ V  + G      + + L R       I++GT     D
Sbjct: 79  PTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRELRR----GVQIVVGTPGRILD 134

Query: 389 -----SIQYYKLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRT-- 434
                +I+   +  V++DE            V++ LK    +T   +LL +AT +P +  
Sbjct: 135 HISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSV--STDKRMLLFSAT-LPDSIM 191

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQ 491
            L    + + DI K+  +             I+  D+  E L  ++   K+ Y +  C  
Sbjct: 192 KLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDK-FELLSRIIDTEKEFYGLIFC-- 248

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
              K +++   V  R N        +   +HG M+   +E  +D FK     +L+AT V 
Sbjct: 249 ---KTKADVDEVANRLN----EKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVA 301

Query: 552 EVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             GID+ D + +    I +N E +    +H++ GR GR  +    I    P
Sbjct: 302 ARGIDINDLTHVVNFDIPQNPESY----VHRI-GRTGRAGKQGYAITFVEP 347


>gi|253583434|ref|ZP_04860632.1| non-specific serine/threonine protein kinase [Fusobacterium varium
           ATCC 27725]
 gi|251834006|gb|EES62569.1| non-specific serine/threonine protein kinase [Fusobacterium varium
           ATCC 27725]
          Length = 1022

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 13/152 (8%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           IL  D+G GKTL  +  ++A  E  G  +I+ P  ++     EF KK+    ++ V I+ 
Sbjct: 600 ILADDMGLGKTLQIISYLSAIKEKTGLKLIIVPKTLMYNWRNEF-KKFA--PELNVNIVE 656

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV---IVDEQHRFG--VQQR 411
           G  P   R++ +E    G   I+I T+       ++YK I +   I+DE       + + 
Sbjct: 657 GKAP--IRKEIVENSKSGD--ILISTYGFLVKDEEFYKDIFIDTLIIDEAQNIKNFLSRT 712

Query: 412 LKLTQKATAPHVLLMTATPIP-RTLVLTSLGD 442
               +K  A   + +T TPI   TL L S+ D
Sbjct: 713 ADSVKKIKAGIRIALTGTPIENNTLELWSIFD 744


>gi|116629962|ref|YP_815134.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|116095544|gb|ABJ60696.1| Superfamily II DNA/RNA helicase required for DNA uptake (late
           competence protein) [Lactobacillus gasseri ATCC 33323]
          Length = 425

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 149/363 (41%), Gaps = 52/363 (14%)

Query: 256 NVEGKIAQKILRNIPF--SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           NVE     KIL  + +  + T+ QE   ++++   S K R   ++    G+GKT +    
Sbjct: 72  NVENGNYPKILTPLSWRETLTEQQELISRELVN--SFKERRNHLIHAVTGAGKTEMLFKV 129

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A++ G +  I  P   +  + +   +   +N +I          + H R+  E    
Sbjct: 130 VEEALKGGFRIAIATPRIDVVDELFPRFQAAFENVKI---------GKYHGREHHE--VR 178

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV------LLMT 427
            +  +I  TH L +    Y    L+++DE   F   +  K+   A    V        +T
Sbjct: 179 DEQFVICTTHQLLK---FYQAFDLIVIDEVDSFPFYEN-KMLHFAAENAVKKVGCTFFLT 234

Query: 428 ATPIPRTLVLTSLGDIDISKITEK--------PAGRKPIKTVIIPINRID-EVIERLKVV 478
           ATP  + L       I+ S +  +        P  +   K+ I    ++   +I+++K +
Sbjct: 235 ATPDSKLLRQAKNKTINYSLLKRRFHQGLLPVPKEKYFFKSYISNKGKVHPTLIKQIKKI 294

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI----AIIHGRMSDIDKESVM 534
           L   K      P+I+E              S +E + SSI     I+     D D+++ +
Sbjct: 295 LDMKKPLLIFVPRIKEL-------------STYEKYLSSIFKTSKIVSVYAGDKDRQAKV 341

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH-FGLAQLHQLRGRVGRGEEISSCI 593
            SF+     +L+ TT++E G+      +I+I   +  +    L Q+ GRVGR  +    +
Sbjct: 342 ASFRRRETDILLTTTILERGVTFKHVQVIVIAADDPIYNTPSLVQIAGRVGRSADDRDGL 401

Query: 594 LLY 596
           +L+
Sbjct: 402 VLF 404


>gi|17986784|ref|NP_539418.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|17982414|gb|AAL51682.1| excinuclease abc subunit b [Brucella melitensis bv. 1 str. 16M]
          Length = 909

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 115 KSEGGIPIRME----------TSFEPSGDQPTAIRDLVEGLENQDRT-QVLLGVTGSGKT 163

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                 MA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 164 FT----MAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 203


>gi|89074254|ref|ZP_01160744.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium sp. SKA34]
 gi|89049958|gb|EAR55492.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium sp. SKA34]
          Length = 427

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 118/290 (40%), Gaps = 35/290 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LAQQ ++ I  Y + T+I V +  G      + KAL    +  A I++ T
Sbjct: 88  RALILTPTRELAQQVFDSITTYAKYTEIKVAVAYGGTSMNVQVKAL----NAGAEILVAT 143

Query: 383 HA-----LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                  +F  S+   ++   ++DE  R      +   Q+       +M   P  R  + 
Sbjct: 144 PGRLLDHVFNGSVSLSEVETFVLDEADRMLDMGFIVDIQR-------IMKRMPAERQTLF 196

Query: 438 TSLGDIDISKITEKPAG---RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            S      SK  +K A      P    + P N   E +E++   + + +KA  +   I  
Sbjct: 197 FS---ATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQIVYPVDKHRKAELLAYLIGS 253

Query: 495 KKESNFRSVV--ERFNSLHEHFTSSIAI-------IHGRMSDIDKESVMDSFKNGTCKLL 545
           +   N+R V+   +     +     + +       I+G  S   ++  +D FK+G  ++L
Sbjct: 254 R---NWRQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQRALDDFKSGKTRVL 310

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +AT V   G+D+     ++  +        +H++ GR GR       I L
Sbjct: 311 VATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRI-GRTGRAGMTGHAITL 359


>gi|332535929|ref|ZP_08411636.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034692|gb|EGI71243.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 422

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 146/353 (41%), Gaps = 55/353 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM--AAAVEAGGQA------ 324
           PT  Q  AI  IL           I   + GSGKT    + M   A +E G ++      
Sbjct: 31  PTPIQAQAIPSILTGSD------LIAGANTGSGKTATFALPMLQKAFLELGAKSTTSKGN 84

Query: 325 ----VIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT--GNMPQAHRRKALERIAHGQAHI 378
               +I+ P   LA Q  + +K Y+ N    ++ +   G +    + +AL     G A I
Sbjct: 85  FVTGLILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQAL----RGGADI 140

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           I+ T     D     +I+  K+  +++DE  R        L+   T     L+   P  +
Sbjct: 141 IVATPGRLLDLISSNAIKLDKVTTLVLDEADRM-------LSLGFTEELADLLALMPAKK 193

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQ 491
             +L S    +  K+  +     P++   I +   DE  +++R+  V ++G+K   +   
Sbjct: 194 QTMLFSATFPEQVKLLTQELLNDPVE---IQVQNKDESTLVQRVFTV-NKGEKTTVLAHL 249

Query: 492 IEEKKESNFRSVVERFNSLH--EHFTSSIA-------IIHGRMSDIDKESVMDSFKNGTC 542
           I+  K   +R V+   N+    EH  + +        + HG     ++  V++ FK G  
Sbjct: 250 IKTHK---WRQVLIFVNAKKDCEHLAAKLEKRGVNAQVFHGDKGQSERTRVIEKFKAGEI 306

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           ++LIAT +   G+D+    ++I  N        +H++ GR GR  E+   + L
Sbjct: 307 EVLIATDIAARGLDIEKLPVVINFNLPRSPADYMHRI-GRSGRAGEVGLALSL 358


>gi|326498121|dbj|BAJ94923.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326527983|dbj|BAJ89043.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 495

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 126/305 (41%), Gaps = 43/305 (14%)

Query: 303 GSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           G+GKT    I     ++      Q VI+ P   LA Q  +  K+  ++ +I V + TG  
Sbjct: 168 GTGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGG- 226

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                +  + R+ +   H+I+GT     D     K  + I+ +     + +  KL     
Sbjct: 227 --TSLKDDIVRL-YQPVHLIVGTPGRVLD---LTKKGICILKDCSMLIMDEADKLLSPEF 280

Query: 420 APHV-LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP----INRIDEV--- 471
            P V  L+   P  R +++ S            P   K  K   +P    IN +DE+   
Sbjct: 281 QPSVEQLIRYLPSSRQILMFS---------ATFPVTVKAFKDKYLPKPYVINLMDELTLK 331

Query: 472 -IERLKVVLSEGKKAYWI---CPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGR 524
            I +    + E +K + +     +++  +   F + V R   L +  T    S   IH +
Sbjct: 332 GITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAK 391

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLR 580
           M    +  V   F+NG C+ L+ T +   GID+   +++I     +NAE +    LH++ 
Sbjct: 392 MLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETY----LHRV- 446

Query: 581 GRVGR 585
           GR GR
Sbjct: 447 GRSGR 451


>gi|323700588|ref|ZP_08112500.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132]
 gi|323460520|gb|EGB16385.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 551

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 136/348 (39%), Gaps = 41/348 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + Q   G+GKT    + +  A E G    Q++I+AP   LA Q  E I       +I V 
Sbjct: 44  VGQAQTGTGKTAAFGLPVIEAAEEGARRVQSLILAPTRELAIQVAEEIDSLKGGKRIRVL 103

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
            + G      + KAL +       +++GT     D     S++  +L   I+DE      
Sbjct: 104 PVYGGQAIHMQLKALRQ----GVDVVVGTPGRIMDHLERGSLRIDQLTYFILDEADEMCN 159

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKTV 461
             F    R  L         L+ +AT     + +    +GD D+ ++  + +     + V
Sbjct: 160 MGFVDDVRAILASANADRRTLMFSATMGGEVMAIAREFMGDFDVVRVKPEVSDAPLTRQV 219

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
              I   D      +V+  + +  ++    +  + +++   V  R              I
Sbjct: 220 FHEIADSDRFEALCRVI--DARPDFYGLVFVRTRADADL--VAARLT----QRGYPAEPI 271

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL-- 579
           HG ++   +E ++  F+     +L+AT V   GIDV D + ++     +F L Q  Q   
Sbjct: 272 HGDLNQAQREKILSGFRERKATILVATDVAARGIDVPDLTHVV-----NFALPQDPQTFV 326

Query: 580 --RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
              GR GR  +    I L  P    N + +L  +  +  G  IA+E L
Sbjct: 327 HRTGRTGRAGKQGVAITLITP----NEFRKLMYIAKST-GIDIAKEPL 369


>gi|307721464|ref|YP_003892604.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979557|gb|ADN09592.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 423

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 135/320 (42%), Gaps = 42/320 (13%)

Query: 302 VGSGKT----LVALIAMAAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            G+GKT    L  L  M   VE+ G +A+I++P   L+ Q YE I  Y++   I   I+ 
Sbjct: 47  TGTGKTAAFALPILQKMRKHVESKGVRAIILSPTRELSIQIYEDITAYSKYMDIKTTILV 106

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALF----QDSIQYYKLILVIVDEQHRFGVQQRL 412
           G      +R+AL++       I+I T        ++ +    + + ++DE  R      +
Sbjct: 107 GGKDLQKQREALKK----GTEIVIATPGRLLEHIENGLSLKDVEVFVLDEADRM---LDM 159

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE----KPAGRKPIK--TVIIPIN 466
             T+     H LL       +TL+ ++     + K+++    KPA  +  K  T +  IN
Sbjct: 160 GFTKDIRKIHPLLPKRH---QTLLFSATFSDKVRKLSKLILTKPAFIETAKKNTTVDTIN 216

Query: 467 RIDEVIERLKVVLSEGKKAYWIC----PQIEEKKESNFRSVVERFNSLHEHFTSS---IA 519
           ++  +++    V      AY I     PQ+       F       ++L E          
Sbjct: 217 QVAYLVD---TVRKAELLAYLIGSRNFPQV-----LVFTRTKVSADALSEELKKDGLKCG 268

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           +IHG  +  ++   ++ FK G  ++L+AT +   G+D+ +   +I           +H++
Sbjct: 269 VIHGDRTKANRLKTLNQFKEGKIRVLVATDIASRGLDIEELPYVINYELPSIPEDYVHRV 328

Query: 580 --RGRVGRGEEISSCILLYH 597
              GR GR  E  S I +Y 
Sbjct: 329 GRTGRAGREGEAISLIDIYE 348


>gi|254730730|ref|ZP_05189308.1| excinuclease ABC subunit B [Brucella abortus bv. 4 str. 292]
 gi|260758452|ref|ZP_05870800.1| excinuclease ABC subunit B [Brucella abortus bv. 4 str. 292]
 gi|260668770|gb|EEX55710.1| excinuclease ABC subunit B [Brucella abortus bv. 4 str. 292]
          Length = 863

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 146 KSEGGIPIRME----------TSFEPSGDQPTAIRDLVEGLENQDRT-QVLLGVTGSGKT 194

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                 MA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 195 FT----MAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 234


>gi|198430288|ref|XP_002129439.1| PREDICTED: similar to eukaryotic translation initiation factor 4A
           [Ciona intestinalis]
          Length = 430

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 119/292 (40%), Gaps = 43/292 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   ++A     QA+++AP   LAQQ  + +        I   
Sbjct: 97  IAQAQSGTGKTATFAISVLQKIDASLKQTQALVIAPTRELAQQIQKVVMALGDYESIHCH 156

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT--------HALFQDSIQYYKLILVIVDEQHR 405
              G       R  ++        I++GT        +  + D+ +    +L   DE   
Sbjct: 157 ACIGG---TSVRTEIQVFQTNPPQIVVGTPGRVFDMINRKYLDTSKVKMFVLDEADEMLS 213

Query: 406 FGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            G + ++     T  AT   V+L++AT     L +T+    D            PI+ ++
Sbjct: 214 RGFKDQIYEIFRTMPATI-QVILLSATMPTDVLDVTTCFMPD------------PIRILV 260

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----------SNFRSVVERFNSLHE 512
                  E I++  V +   +K  W    + +  E          SN R  V+      +
Sbjct: 261 KKEELTLEGIQQFYVFV---EKEEWKLDTLCDLYETLTITQAVIFSNTRRKVDWLTEELQ 317

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               +++ +HG M   D+E +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 318 RRDFTVSALHGDMDQGDREVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 369


>gi|148994055|ref|ZP_01823411.1| primosome assembly protein PriA [Streptococcus pneumoniae SP9-BS68]
 gi|168488545|ref|ZP_02712744.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae SP195]
 gi|147927522|gb|EDK78550.1| primosome assembly protein PriA [Streptococcus pneumoniae SP9-BS68]
 gi|183572620|gb|EDT93148.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae SP195]
 gi|332072567|gb|EGI83050.1| primosomal protein N [Streptococcus pneumoniae GA17570]
          Length = 798

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q  +  
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--ESN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|324994074|gb|EGC25988.1| primosome assembly protein PriA [Streptococcus sanguinis SK678]
 gi|327459280|gb|EGF05626.1| primosome assembly protein PriA [Streptococcus sanguinis SK1]
 gi|327472706|gb|EGF18133.1| primosome assembly protein PriA [Streptococcus sanguinis SK408]
 gi|327490498|gb|EGF22279.1| primosome assembly protein PriA [Streptococcus sanguinis SK1058]
          Length = 796

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 19/187 (10%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q +A+  I Q + Q +    +L+G  GSGKT V L  +A A+  G  A+++ P I +  Q
Sbjct: 263 QAAAVAAITQKIVQSHSQPVLLEGVTGSGKTEVYLQVIAEALAQGKAAIMLVPEISLTPQ 322

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
               FI ++       V I+   +    +     ++  G A +++G   A+F        
Sbjct: 323 VTDRFISRFGDQ----VAILHSGLSDGEKYDEWRKVERGAAQVVVGARSAIF---APLTN 375

Query: 395 LILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +  +I+DE+H          R+  ++   L  +     ++L +ATP   +    S G  D
Sbjct: 376 IGAIIIDEEHESSYKQDSNPRYHAREVALLRAQYNQAVLVLGSATPSLESRARASRGVYD 435

Query: 445 ISKITEK 451
              ++++
Sbjct: 436 FQVLSKR 442


>gi|309803230|ref|ZP_07697327.1| primosomal protein N' [Lactobacillus iners LactinV 11V1-d]
 gi|308164738|gb|EFO66988.1| primosomal protein N' [Lactobacillus iners LactinV 11V1-d]
          Length = 683

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q++A+  I Q + +KN    +L+G  GSGKT V L A+A  ++    A+++ P I +  Q
Sbjct: 151 QQAALDQINQQIVRKNAKTFLLEGITGSGKTEVYLHAIAECLKNNKSALMLVPEIALTPQ 210

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
              +   ++ ++    V ++   + +  +     RI + + H+++G   A+F        
Sbjct: 211 MVNQVKSRFGKD----VAVLHSALSEGEKYDEWCRIRNQETHVVVGARSAIFAPLTN--- 263

Query: 395 LILVIVDEQHRFGVQQ 410
           + L+I+DE+H    +Q
Sbjct: 264 IGLIIIDEEHEASYKQ 279


>gi|308182422|ref|YP_003926549.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4]
 gi|308064607|gb|ADO06499.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4]
          Length = 492

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 142/348 (40%), Gaps = 47/348 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++     +A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRD------VIAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G       +K  E I      ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQ---SVKKQCEFIKKN-PQVMIATPGRLLDH 151

Query: 390 IQY---YKLI--LVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT---PIPRTLV 436
           ++    +K +  +V++DE         L   ++      +   +LL +AT   PI R   
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKR--- 208

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE-- 494
              L D    KI E P     IK  I P N  +  I +   V++E ++A  I   ++   
Sbjct: 209 ---LAD----KILENP-----IKIHIAPSNTTNTDITQRFYVINEHERAEAIMHLLDTQA 256

Query: 495 -KKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            KK   F    +  + LH+   S       +HG M   D+ + + +FK     +L+AT V
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|256077147|ref|XP_002574869.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238660085|emb|CAZ31102.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 401

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 147/349 (42%), Gaps = 75/349 (21%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAP 329
           P+  Q+ AIK I+     K R + I Q   G+GKT    ++++ M        QA++++P
Sbjct: 51  PSAIQQRAIKQIV-----KGRDV-IAQAQSGTGKTATLGISILQMLDTQLRETQALVLSP 104

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I        +      G     +  + + ++ +GQ H+I GT     D 
Sbjct: 105 TRELASQIQKVILALGDYMNVQCHACYGG---TNIGEDIRKLDYGQ-HVISGTPGRVFDM 160

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++    +   P   V+L++AT     L +TS
Sbjct: 161 IRRRSLRTRAVKLFVLDEADEMLDKGFKEQIYDVYRYLPPGTQVVLLSATMPHEILEMTS 220

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                  K    P              RI  +++R ++ L EG K +++  + EE K   
Sbjct: 221 -------KFMTNPV-------------RI--LVKRDELTL-EGIKQFFVAVEREEWK--- 254

Query: 500 FRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMDS 536
           F ++ + +++L                         +FT  +A +HG M   ++E +M  
Sbjct: 255 FDTLCDLYDTLTVTQSVIFCNTKRKVAWLTEKMLKNNFT--VASMHGDMVQKEREEIMKD 312

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           F+ G  ++LI T +   GIDV   S++I  +  +     +H++ GR GR
Sbjct: 313 FRAGDSRVLITTDLWARGIDVQQVSLVINYDLPNNRELYIHRI-GRSGR 360


>gi|145256950|ref|XP_001401571.1| ATP-dependent RNA helicase ded1 [Aspergillus niger CBS 513.88]
 gi|134034089|sp|A2QI25|DED1_ASPNC RecName: Full=ATP-dependent RNA helicase ded1
 gi|134058481|emb|CAL00690.1| unnamed protein product [Aspergillus niger]
          Length = 678

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 72/344 (20%), Positives = 135/344 (39%), Gaps = 94/344 (27%)

Query: 302 VGSGKTLVALIAM----------AAAVEAGGQ------------AVIMAPIGILAQQHYE 339
            GSGKT   L  +          AA  +AGGQ            ++I+AP   L  Q ++
Sbjct: 233 TGSGKTGGFLFPILSQAYQNGPSAAPAQAGGQFGYGRQRKAYPTSLILAPTRELVSQIFD 292

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV- 398
             +K+   + +   ++ G      + + +ER       +++ T     D I+  ++ LV 
Sbjct: 293 EARKFAYRSWVRPCVVYGGADIGSQLRQIER----GCDLLVATPGRLVDLIERGRISLVN 348

Query: 399 ----IVDEQHRF---GVQQRLK-LTQKATAPHV----LLMTATPIPRTLVLTSLGDIDIS 446
               I+DE  R    G + +++ + +    PHV     LM +   PR + + +    D  
Sbjct: 349 IKYLILDEADRMLDMGFEPQIRRIVEGEDMPHVNDRQTLMFSATFPRDIQMLAR---DFL 405

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
           K             V + + R+    E              I  ++E  ++ + RSV+  
Sbjct: 406 K-----------DYVFLSVGRVGSTSEN-------------ITQKVEYVEDHDKRSVL-- 439

Query: 507 FNSLHEHFTSSIAII-------------------------HGRMSDIDKESVMDSFKNGT 541
            + LH H TS + +I                         HG  +  ++E  ++ F++G 
Sbjct: 440 LDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGR 499

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           C +L+AT V   G+D+ + + +I  +        +H++ GR GR
Sbjct: 500 CPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGR 542


>gi|332361718|gb|EGJ39522.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056]
          Length = 523

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 131/335 (39%), Gaps = 38/335 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT          ++      QA+I+AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I        Q   LIL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLN 157

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G  + ++           +++  P  R  +L S    D  K       ++P    I   
Sbjct: 158 MGFLEDIES----------IISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK 207

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI----- 520
               E++++  + + E +K +    ++ + ++     V  R     +  T  + I     
Sbjct: 208 ELTTELVDQYYIRVKENEK-FDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRA 266

Query: 521 --IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +H+
Sbjct: 267 EGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 326

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + GR GR  +    I    P    N    L +++N
Sbjct: 327 I-GRTGRAGKSGQSITFVAP----NEMGYLQIIEN 356


>gi|327461635|gb|EGF07966.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1]
          Length = 523

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 131/335 (39%), Gaps = 38/335 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT          ++      QA+I+AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I        Q   LIL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLN 157

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G  + ++           +++  P  R  +L S    D  K       ++P    I   
Sbjct: 158 MGFLEDIES----------IISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK 207

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI----- 520
               E++++  + + E +K +    ++ + ++     V  R     +  T  + I     
Sbjct: 208 ELTTELVDQYYIRVKENEK-FDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRA 266

Query: 521 --IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +H+
Sbjct: 267 EGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 326

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + GR GR  +    I    P    N    L +++N
Sbjct: 327 I-GRTGRAGKSGQSITFVAP----NEMGYLQIIEN 356


>gi|325697116|gb|EGD39003.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160]
 gi|327473355|gb|EGF18775.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408]
 gi|332362751|gb|EGJ40547.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49]
          Length = 523

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 131/335 (39%), Gaps = 38/335 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT          ++      QA+I+AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I        Q   LIL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLN 157

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G  + ++           +++  P  R  +L S    D  K       ++P    I   
Sbjct: 158 MGFLEDIES----------IISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK 207

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI----- 520
               E++++  + + E +K +    ++ + ++     V  R     +  T  + I     
Sbjct: 208 ELTTELVDQYYIRVKENEK-FDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRA 266

Query: 521 --IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +H+
Sbjct: 267 EGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 326

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + GR GR  +    I    P    N    L +++N
Sbjct: 327 I-GRTGRAGKSGQSITFVAP----NEMGYLQIIEN 356


>gi|301111464|ref|XP_002904811.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262095141|gb|EEY53193.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 681

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 17/111 (15%)

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E KK+ N  +V       H    +   ++HG ++   +E+ M +F+ G  +LLIAT V  
Sbjct: 367 ETKKDCNELAV-------HPEIKTDCQVLHGDIAQEQRETTMKAFREGRLRLLIATDVAA 419

Query: 553 VGIDVVDASIIIIENAE----HFGLAQLHQL---RGRVGRGEEISSCILLY 596
            G+D+   ++ ++ N+E      G+A +       GR GR  +   CI LY
Sbjct: 420 RGLDM---NVDLVINSEPPRKMSGMADVDTYVHRSGRTGRAGKKGICITLY 467


>gi|303318078|ref|XP_003069041.1| ATP-dependent RNA helicase ROK1, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240108722|gb|EER26896.1| ATP-dependent RNA helicase ROK1, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 729

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 23/153 (15%)

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           +S IA++H  +SD  +  VM  F+ G   +LI T ++  G+D    + ++  +  +   +
Sbjct: 531 SSRIAVLHSELSDSKRSDVMAGFRKGEIWVLITTDLLARGVDFRGINGVVNYDIPNSSAS 590

Query: 575 QLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
            +H++ GR GR G E    +  Y       +   +  +KN  +  + A E+L+  +EGE 
Sbjct: 591 YVHRV-GRTGRAGREGGVAVTFY-------TKEDIPYVKNIAN-VISASENLRGTEEGER 641

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           +       PK+L+      D+L  +++ D K +
Sbjct: 642 I-------PKWLL------DALPSLSKNDKKDL 661


>gi|224541736|ref|ZP_03682275.1| hypothetical protein CATMIT_00908 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525340|gb|EEF94445.1| hypothetical protein CATMIT_00908 [Catenibacterium mitsuokai DSM
           15897]
          Length = 728

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           K+   I  +P   QES ++ ILQ     +  + ++ G  GSGKT V +      +E    
Sbjct: 192 KVNNEITLTPL--QESVVRGILQT----SHTISLIHGVTGSGKTEVYIALTKKMLEKNKT 245

Query: 324 AVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            +++ P I +       F +++       V II   + Q  +     RI  G+A I++G 
Sbjct: 246 VLMLVPEISLTPMMERIFKERFHDE----VAIIHSRLSQGEKYDEYRRIKKGEARIVVGA 301

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQR----------LKLTQKATAPHVLLMTATPIP 432
            +     ++   L L+I+DE+H    +Q            K+  +     ++L +ATP  
Sbjct: 302 RSAIFAPVE--NLGLIIMDEEHDMSYKQDNTPRYHTLSIAKMRAEKNNAKIVLGSATPSV 359

Query: 433 RTLVLTSLGDIDISKITEKPAGR 455
            T      G   + ++ E+  G+
Sbjct: 360 ETYARAQKGIYGLFEMKERINGK 382


>gi|191171034|ref|ZP_03032585.1| ATP-independent RNA helicase DbpA [Escherichia coli F11]
 gi|190908766|gb|EDV68354.1| ATP-independent RNA helicase DbpA [Escherichia coli F11]
          Length = 457

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 129/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA ++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQAFVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVICFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++         VV    KK              + +SV +
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSC-----VVFCNTKK--------------DCQSVCD 259

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             N + +   S    +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 260 ALNEVGQSALS----LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|190408613|gb|EDV11878.1| pre-mRNA processing ATP-dependent RNA helicase PRP5 [Saccharomyces
           cerevisiae RM11-1a]
          Length = 849

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 156/396 (39%), Gaps = 78/396 (19%)

Query: 302 VGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQII 351
            GSGKT+  L+ +   V         E G   +I+AP   LA Q +E + K+T+ +T I 
Sbjct: 302 TGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEADTSIR 361

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD--------SIQYYKLILVIVDEQ 403
               TG    +  +K +  +  G   I++ T   F D         +   ++  V++DE 
Sbjct: 362 SVCCTGG---SEMKKQITDLKRG-TEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEA 417

Query: 404 HRF---GVQQRLKLTQKATAP--HVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGR 455
            R    G + ++    K   P    +L +AT  P   R+  +  L               
Sbjct: 418 DRLFDLGFEPQITQIMKTVRPDKQCVLFSAT-FPNKLRSFAVRVL--------------H 462

Query: 456 KPIKTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKE---------SNFRSVVE 505
            PI   I     I+E V ++ ++  SE +K   +   I E+ E             S VE
Sbjct: 463 SPISITINSKGMINENVKQKFRICHSEDEKFDNLVQLIYERSEFFDEVQSENDGQSSDVE 522

Query: 506 RFNSLHEHFTSSIAI-----------------IHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             ++    F SS  I                 IH      ++   ++ FK     +L+ T
Sbjct: 523 EVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKREKNSILLCT 582

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPLSKNSYTR 607
            V+  G++V + S++II NA     AQ     GR  RG    + I LL H  LS  +Y  
Sbjct: 583 EVLSRGLNVPEVSLVIIYNAVK-TFAQYVHTTGRTARGSRSGTAITLLLHDELS-GAYIL 640

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
              +++ E   + A   L+ ++  E+    +SGM K
Sbjct: 641 SKAMRDEE---IKASNSLQAKELQEMSAKFESGMKK 673


>gi|91772921|ref|YP_565613.1| Hef nuclease [Methanococcoides burtonii DSM 6242]
 gi|91711936|gb|ABE51863.1| Hef helicase [Methanococcoides burtonii DSM 6242]
          Length = 769

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 16/140 (11%)

Query: 302 VGSGKTLVALIAMAAAVE-AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G GKT+VAL+ +A+ ++  GG+A+I++P   L +QH  F++      +  +   TG + 
Sbjct: 50  TGLGKTIVALLVIASRLQKTGGKALILSPTKPLVEQHAAFLRSTLNIPEDEILTFTGAVA 109

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-FGVQQRLKL 414
              R +  ++       +II T  + ++ I   ++ L     +  DE HR  G      +
Sbjct: 110 PDKREELWKK-----GKVIISTPQVIENDILTKRISLEDVTHITFDEAHRAVGNYAYTYI 164

Query: 415 TQK----ATAPHVLLMTATP 430
            ++    A  PH L +TA+P
Sbjct: 165 AERYFEDAKKPHCLAITASP 184


>gi|82751683|ref|YP_417424.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
 gi|123548216|sp|Q2YUH3|Y1965_STAAB RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAB1965c
 gi|82657214|emb|CAI81654.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
          Length = 506

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 156/376 (41%), Gaps = 60/376 (15%)

Query: 249 KEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGK 306
           KE+GI  N       + L ++ F  PT  Q+ +I   LQ +        IL Q   G+GK
Sbjct: 5   KELGISDNT-----VQSLESMGFKEPTPIQKDSIPYALQGID-------ILGQAQTGTGK 52

Query: 307 TLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           T    I +   V  + G Q++I+AP   LA Q  E ++++++   + V  + G MP   +
Sbjct: 53  TGAFGIPLIEKVVWKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQ 112

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQ 416
            KAL++       I++GT     D +          + LIL   DE    G    ++   
Sbjct: 113 IKALKK----GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIM 168

Query: 417 K---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
               A     +L +AT +P+ +         + +  + P   K IKT+   ++  D  IE
Sbjct: 169 DKIPAVQRQTMLFSAT-MPKAIQAL------VQQFMKSP---KIIKTMNNEMS--DPQIE 216

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-------AIIHGRMS 526
               ++ E +K +       +  +     V  R     +  TS++         +HG ++
Sbjct: 217 EFYTIVKELEK-FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDIT 275

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGR 582
              +  V+  FKN    +L+AT V   G+D+   S +    I ++ E +     H++ GR
Sbjct: 276 QAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY----THRI-GR 330

Query: 583 VGRGEEISSCILLYHP 598
            GR  +    +   +P
Sbjct: 331 TGRAGKEGIAVTFVNP 346


>gi|120599366|ref|YP_963940.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146292637|ref|YP_001183061.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120559459|gb|ABM25386.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145564327|gb|ABP75262.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 449

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 129/325 (39%), Gaps = 47/325 (14%)

Query: 302 VGSGKTLVAL-------IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L       I+  +  +   + +I+ P   LA Q Y  ++    NTQ     
Sbjct: 47  TGSGKTLAFLLPALQRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAIS 106

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---F 406
           + G      + KAL +    + H I+ T     D ++   L L     +I+DE  R    
Sbjct: 107 VLGGENFNDQAKALAK----EPHFIVATPGRIADHLEQKHLFLNGLELLILDEADRMLDL 162

Query: 407 GVQQRLKLTQKATAPH----VLLMTATPIPRTLVLTSLGDIDISKITEKPAG--RKPIKT 460
           G   +LK   +A A H     L+ +AT             +D S+I +  A   + P   
Sbjct: 163 GFAPQLKTINEA-ADHKRRQTLMFSAT-------------LDHSEINDIAATLLKNPAHV 208

Query: 461 VI-IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------RSVVERFNSLHEH 513
            I    +  +++ +R+ +      K   +   ++++           R   ER  +    
Sbjct: 209 AIDASHSEHNDIHQRIFLCDHLDHKEALLTRLLQDETHKQVIVFTATRPDTERLAAKLST 268

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              + A + G +    +  +MD F  G  ++L+ T V   G+D+++ S++I  +   F  
Sbjct: 269 QGFATAALSGDLKQAARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAE 328

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
             +H++ GR GR       I L  P
Sbjct: 329 EYVHRI-GRTGRAGAKGDAISLVGP 352


>gi|301602401|gb|ADK79106.1| vasa-like protein [Dicentrarchus labrax]
          Length = 637

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 65/329 (19%), Positives = 135/329 (41%), Gaps = 48/329 (14%)

Query: 302 VGSGKTLVALIA-----MAAAVEAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+      MA  V A         +AVI+AP   L  Q Y   +K+   T 
Sbjct: 246 TGSGKTAAFLLPILQQLMADGVAASSFSELQEPEAVIVAPTRELINQIYLEARKFAFGTC 305

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           +   ++ G +   H+ + + R      +++ GT     D I   K+ L  V     F + 
Sbjct: 306 VRPVVVYGGVSTGHQIREISR----GCNVLCGTPGRLLDVIGRGKVGLSKV---RYFVLD 358

Query: 410 QRLKLTQKATAPHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK------------ 451
           +  ++      P +  +  +P +P     +TL+ ++    DI ++               
Sbjct: 359 EADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVG 418

Query: 452 --PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
                   ++   + + +  +  + L ++ + G +   +   +E K++++F   +  +  
Sbjct: 419 VVGGACSDVEQTFVQVTKFSKREQLLDLLKTTGMERTMVF--VETKRQADF---IATYLC 473

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
             +  T+SI   HG     ++E  +  F++G C +L+AT+V   G+D+ D   ++  +  
Sbjct: 474 QEKVPTTSI---HGDREQREREQALADFRSGKCPVLVATSVAARGLDIPDVQHVVNFDLP 530

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +     +H++ GR GR       +  + P
Sbjct: 531 NNIDEYVHRI-GRTGRCGNTGRAVSFFDP 558


>gi|315640866|ref|ZP_07895965.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           italicus DSM 15952]
 gi|315483405|gb|EFU73902.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           italicus DSM 15952]
          Length = 449

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 144/352 (40%), Gaps = 53/352 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT+ QE  I  I      K + L I Q   GSGKT   L+ +   V+      Q VI AP
Sbjct: 24  PTEVQEKLIPII-----SKGKSL-IGQSQTGSGKTHTFLLPLFDKVQPEKNEVQVVICAP 77

Query: 330 IGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
              LA Q Y+  K+      T+I V    G      +++ ++RIA+ Q  ++IGT     
Sbjct: 78  SRELASQIYQEAKQLASFSETEIRVMNFVGG---TDKKRQVDRIANQQPQVVIGTPGRIL 134

Query: 388 D-----SIQYYKLILVIVDEQH---RFGVQQRL-KLTQKATAPHVLLMTATPIPRTLVLT 438
           D     ++Q +     +VDE       G    + ++  K +     L+ +  IP  L   
Sbjct: 135 DMINEQALQIHTAFAFVVDEADMALDMGFLPEVDQIAAKFSEDIQFLVFSATIPEKL--- 191

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                   +   K   + P+   I     I + I+   ++ ++GK    +  Q+      
Sbjct: 192 --------RPFLKKYMQNPVIEEIASKTVISDSIDNW-LISTKGKNTSHLVYQLLTVGHP 242

Query: 499 N----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F +  +R N +  +       +A IHG +S  +++ VM   +N   + ++AT + 
Sbjct: 243 YLAIVFANTKQRVNEIANYLKEQDLKVATIHGDISPRERKRVMKQVQNMEFQYVVATDLA 302

Query: 552 EVGIDVVDASIIIIENAE-----HFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             GID+   S +I  NAE      F + ++    GR GR +     I LY P
Sbjct: 303 ARGIDIEGVSHVI--NAEIPDDLDFFIHRV----GRTGRNQLSGIAITLYDP 348


>gi|289619199|emb|CBI54467.1| unnamed protein product [Sordaria macrospora]
          Length = 483

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 159/390 (40%), Gaps = 59/390 (15%)

Query: 249 KEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +E+G+P  V      + L  I F  P+K QE  +  +L D  +      I Q   G+GKT
Sbjct: 77  EELGLPEAV-----NRGLLAINFKKPSKVQEKCLPLMLSDPPRN----MIAQSQSGTGKT 127

Query: 308 LVALIAMAAAVEAGG----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
              ++ + + ++       QA+++AP   LA+Q    I+   Q  + +  I+   +P A 
Sbjct: 128 AAFVLTVLSRIDLSKPHQPQALLLAPSRELARQIQTVIQTIGQFCENL--IVEAAIPGAI 185

Query: 364 RRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLK---LT 415
            R+   R       +++GT     D          +L ++++DE      QQ L    + 
Sbjct: 186 SRETGVR-----GSVVVGTPGTVMDLCKRRQFDTSQLKVLVIDEADNMLDQQGLGDQCVR 240

Query: 416 QKATAP---HVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKTVII--PINRI 468
            K+  P    +LL +AT   + L        + +  K+  K    K I  + +  P  + 
Sbjct: 241 VKSLLPKTIQILLFSATFPDKVLRFAERFAPNANQMKLKHKELTVKGISQMFMDCPTEKD 300

Query: 469 D-EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             +++ +L  +++ G    ++            R          E     ++ +HG    
Sbjct: 301 KYDILCKLYGLMTIGSSVIFV----------RTRETANEIQKRMEADGHKVSALHGAYEG 350

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ--------LHQL 579
             ++ ++D F++G  K+LI T V+  GIDV   S++I  +    G  +        LH++
Sbjct: 351 QSRDVLLDEFRSGRSKVLITTNVLARGIDVSSVSMVINYDIPMKGPGEREPDAETYLHRI 410

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
            GR GR   +   I   H    + SY  LS
Sbjct: 411 -GRTGRFGRVGVSISFVH---DRRSYEALS 436


>gi|259047162|ref|ZP_05737563.1| DEAD/DEAH box family ATP-dependent RNA helicase [Granulicatella
           adiacens ATCC 49175]
 gi|259036212|gb|EEW37467.1| DEAD/DEAH box family ATP-dependent RNA helicase [Granulicatella
           adiacens ATCC 49175]
          Length = 462

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 151/356 (42%), Gaps = 40/356 (11%)

Query: 263 QKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           QK L ++ F+ PT  QE  I  +L+  S       I Q   GSGK+   L+ +   ++  
Sbjct: 41  QKALADLKFTQPTPIQERIIPLLLKGES------VIGQSQTGSGKSHSFLLPLINKIDPS 94

Query: 322 GQA---VIMAPIGILAQQHYEFIKKYT--QNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            Q    VI  P   LA+Q      +     +T+I++E   G      +++ + ++   Q 
Sbjct: 95  RQELQLVITVPSRELAEQLTAVAAQLITFSDTEILLEKCIGG---TDKKRQVAKLTQTQP 151

Query: 377 HIIIGTHALFQDSIQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATA--PHVLLMT-- 427
           HI+IGT     D +Q   L      +++VDE         L+   +  +  P  L M+  
Sbjct: 152 HIVIGTPGRIFDLMQENALFVQTVQMMVVDEADMTFDLGFLETVDEIASRMPENLQMSVF 211

Query: 428 ATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +  IP   R  +   LG+  + +I         IK  ++ + +    ++ L+ +L  G  
Sbjct: 212 SATIPDKIRPFLKKYLGNPKVIQIENTQLVSPTIKNQLL-VTKAQNPMDVLRQLLVMGH- 269

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            Y +   +  K++++     E    L  H    +A IHG +   ++  VM   +    + 
Sbjct: 270 PYLVLIFVNTKQKAD-----EVTKDLRNH-NFKVATIHGDIPSRERRRVMKQIQQMDYQF 323

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQ--LHQLRGRVGRGEEISSCILLYHP 598
           ++AT +   GID+   S +I  N E  G  +  +H++ GR GR     + I  Y P
Sbjct: 324 VVATDLAARGIDIEGVSHVI--NLEIPGELEFFIHRV-GRTGRNGLEGTAITFYTP 376


>gi|212696163|ref|ZP_03304291.1| hypothetical protein ANHYDRO_00699 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676792|gb|EEB36399.1| hypothetical protein ANHYDRO_00699 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 210

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 20/182 (10%)

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQ 346
           M Q N+   +L+G  GSGKT V L  +   ++ G  ++I+ P I +  Q    F  ++ Q
Sbjct: 1   MDQPNKSY-LLKGVTGSGKTEVFLQIVEENLKNGKDSIILVPEISLTPQTIERFQGRFNQ 59

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH- 404
                + I+   + Q  + +    I +G   I++G   A+F     +  L  +I+DE+H 
Sbjct: 60  K----IAILHSRLTQKEKFQQWRMIKNGDVKIVVGARSAIFAP---FKNLGAIIIDEEHD 112

Query: 405 ---------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
                    +F   +     QK     ++  +ATP  +T+     G  ++ ++  +  G+
Sbjct: 113 KSYISSQDPKFHTDELALFRQKYNKATLIFASATPSIKTMTKALNGQNNLVELKNRVNGK 172

Query: 456 KP 457
            P
Sbjct: 173 MP 174


>gi|189234356|ref|XP_973872.2| PREDICTED: similar to pitchoune CG6375-PB [Tribolium castaneum]
          Length = 695

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 129/337 (38%), Gaps = 68/337 (20%)

Query: 302 VGSGKTLVALIAMAAAV-------EAGGQAVIMAPIGILAQQHYEFIK---KYTQNTQII 351
            GSGKTL  LI     +         G   +I++P   L+ Q +  +K   KY  +T  +
Sbjct: 176 TGSGKTLAFLIPAVELIYKLKFMPRNGTGVIIISPTRELSMQTFGVLKELMKYHHHTYGL 235

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHR 405
           V      M    R+   ++++ G  +I++ T     D +Q      +  L  +++DE  R
Sbjct: 236 V------MGGTSRQTEAQKLSKG-INILVATPGRLLDHMQNTPDFLFKNLQCLVIDEADR 288

Query: 406 F---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
               G ++ +K  +         +L +AT   +T  LTSL                 +K 
Sbjct: 289 ILDIGFEEEMKQIINLLPKRRQTMLFSATQTKKTEALTSLA----------------LKK 332

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---------KESNFRSVVERFNSL- 510
             I +   D   E     L +G   Y +CP   EK         K++  + V+  F+S  
Sbjct: 333 EPIYVGVDDAKSEATVTGLEQG---YVVCPS--EKRLLVLFTFLKKNRKKKVMVFFSSCM 387

Query: 511 -----HEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
                HE F      +  IHG+     + +    F N    +L+ T V   G+D+     
Sbjct: 388 SVKFHHELFNYIDLPVMCIHGKQKQAKRTTTFFQFCNAESGILLCTDVAARGLDIPAVDW 447

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           I+  +        +H++ GR  RGE  S   LL   P
Sbjct: 448 IVQYDPPDDPKEYIHRV-GRTARGEGSSGHALLILRP 483


>gi|170091070|ref|XP_001876757.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648250|gb|EDR12493.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 661

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG    +D++S +  FK+G   ++IAT+V   G+DV    ++I  +A +     +H+  
Sbjct: 360 LHGGKDQVDRDSTIADFKSGVVPIVIATSVAARGLDVKQLKLVINYDAPNHMEDYVHRA- 418

Query: 581 GRVGRGEEISSCILLYHP 598
           GR GR     +C+    P
Sbjct: 419 GRTGRAGNKGTCVTFITP 436


>gi|292490189|ref|YP_003525628.1| primosomal protein N' [Nitrosococcus halophilus Nc4]
 gi|291578784|gb|ADE13241.1| primosomal protein N' [Nitrosococcus halophilus Nc4]
          Length = 737

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 9/129 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q++A+  +L    Q    L  L+G  GSGKT V L A+   +    QA+++ P IG+  Q
Sbjct: 209 QKAAVTTLLAAQQQFQPFL--LEGVTGSGKTEVYLQAIEKIITHNRQALVLIPEIGLTPQ 266

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
                ++++ +  Q  + ++   +    R  A      G+A ++IGT +     +Q+  L
Sbjct: 267 ----IVERFRRQLQAPIAVLHSALSDRERLAAWLAAYEGRAAVVIGTRSAIWTPLQH--L 320

Query: 396 ILVIVDEQH 404
            ++I+DE+H
Sbjct: 321 GIIIIDEEH 329


>gi|226289558|gb|EEH45042.1| DEAD/DEAH box helicase [Paracoccidioides brasiliensis Pb18]
          Length = 1205

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 135/341 (39%), Gaps = 49/341 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA--PIGILAQQHYEFIKK---YTQNTQ-I 350
           I+     SGK+L+  + M   +E   Q+  M   P   LAQ     +K+   Y +  +  
Sbjct: 415 IVSTSTSSGKSLIYQVPMLHELEQDPQSRGMYIFPTKALAQDQRRSLKELLGYIEGLEHT 474

Query: 351 IVEIITGNMPQAHRRKALE--RIAHGQA---HIIIGTHALFQDSIQYY--KLILVIVDEQ 403
           +VE   G+ P   R    +  RI        HI I  H   + S + +   L  V+VDE 
Sbjct: 475 LVETFDGDTPMEDRNTIRDEARIIFTNPDMLHITILPH---ESSWRTFLKNLKFVVVDEL 531

Query: 404 HRFG---------VQQRLKLTQKATAP-HVLLMT-----ATPIPRTLVLTSLGDIDISKI 448
           H +          V +RL+    A    HV  ++     A P      +  + D+ ++ I
Sbjct: 532 HVYNGLFGSHIAFVMRRLRRVCAAVGNRHVRFISCSATVANPEEHMRTIFGIDDVKLTDI 591

Query: 449 TEKPAGRKPIKTVIIP-----------INRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
              P+GRK       P           +N I E       ++  G +    C +I ++ E
Sbjct: 592 DGSPSGRKEFICWNTPFRDPGDPSSGRVNSIRETACLFCQLILRGVRVIAFC-RIRKQCE 650

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIH-GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +V + F +L     S   + + G  S  D+  +      G    ++AT  +E+G+D
Sbjct: 651 LLLSAVRDEFRNLDRPSVSKFVMGYRGGYSPQDRRKIERDMFEGKLLGIVATNALELGVD 710

Query: 557 V--VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +  +DA I +      + ++ L Q  GR GR  + S  IL+
Sbjct: 711 IGSLDAVITL---GFPYSISNLRQQSGRAGRRNKDSVSILV 748


>gi|221126753|ref|XP_002164824.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
 gi|260222162|emb|CBA31453.1| ATP-independent RNA helicase dbpA [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 460

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 128/309 (41%), Gaps = 32/309 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I Q   GSGKT    + + A +       QA+++ P   LA Q    I++  +    I V
Sbjct: 43  IAQAKTGSGKTAAFALPLLAKLNPRWFAVQAMVLCPTRELADQVTVEIRRLARAQDNIKV 102

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +R +LE      AHI++GT     D ++   L L     +++DE  R  
Sbjct: 103 VTLCGGVATRGQRASLEN----GAHIVVGTPGRIMDLLEREYLTLEGLNTLVLDEADRM- 157

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                 L        V +    P  R TL+ ++     I K+ ++         V  P+ 
Sbjct: 158 ------LDMGFFDDIVTVARQCPKERQTLLFSATYPEGIEKLAKQFMQDPQQIKVEAPV- 210

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSSIAI--- 520
             D  IE+    +    +   +C  +   +  +   F +  ++ N L +   +   +   
Sbjct: 211 -ADNTIEQRFFEVDRESRFSAVCSILNHFRPVSTIAFCNTKQQCNELVDKLVTDGFVAQA 269

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG +   +++ V+  F N +C +L+AT V   G+DV +  I+I  N +     ++H  R
Sbjct: 270 LHGDLDQRERDQVLAQFANRSCSVLVATDVASRGLDVKELDIVI--NVDITPDPEVHVHR 327

Query: 581 -GRVGRGEE 588
            GR GR  E
Sbjct: 328 IGRTGRAGE 336


>gi|213052645|ref|ZP_03345523.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 69

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM +FK
Sbjct: 7   TEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFK 66

Query: 539 NG 540
            G
Sbjct: 67  QG 68


>gi|91223278|ref|ZP_01258544.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
 gi|91192091|gb|EAS78354.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
          Length = 443

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 145/367 (39%), Gaps = 67/367 (18%)

Query: 302 VGSGKTLVALIAM-------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  ++ M        +      +AVI+AP   LA+Q Y  ++           +
Sbjct: 47  TGSGKTLAFVLPMLHKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAAL 106

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---F 406
           I G      + KAL R        I+ T     D +++  L L     +I+DE  R    
Sbjct: 107 ILGGENFNDQVKALRRYPK----FIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDL 162

Query: 407 GVQQRLKLTQKATAPH----VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           G    L+   KA A H     L+ +AT          L   D+++I  +     P +  I
Sbjct: 163 GFAPELRRIHKA-AKHRRRQTLMFSAT----------LDHADVNEIAAEMLN-APKRIAI 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--------ESNFRSVV---------E 505
              N   + I           + +++C  ++ K+        E+ +R V+         E
Sbjct: 211 GVSNEEHKDIT----------QKFYLCDHLDHKEAILDRVLSEAEYRQVIIFTATRDDTE 260

Query: 506 RFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           R    L+E    ++A+  G ++   + ++M  F+    K+L+ T V   G+D+   + +I
Sbjct: 261 RLTEKLNEKKLKAVAL-SGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIATVTHVI 319

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
             +        +H++ GR GR       I L  P    +S+ R+      +  F +  ED
Sbjct: 320 NFDMPKHTEEYVHRV-GRTGRAGNKGDAISLVGPK-DWDSFKRVEAYLQQDLEFSVF-ED 376

Query: 625 LKQRKEG 631
           LK + +G
Sbjct: 377 LKGKFKG 383


>gi|319648379|ref|ZP_08002595.1| DeaD protein [Bacillus sp. BT1B_CT2]
 gi|317389458|gb|EFV70269.1| DeaD protein [Bacillus sp. BT1B_CT2]
          Length = 481

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 127/320 (39%), Gaps = 34/320 (10%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  +    E   QA+I+ P   LA Q  E +    +  +I   
Sbjct: 45  VVKSRTGSGKTAAFGIPLCELTEWEENKPQALILTPTRELAAQVKEDLTNIGRYKRIKAA 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF-- 406
            + G      ++  L++    + HI++GT     D I+       KL  +++DE  +   
Sbjct: 105 AVYGKSSFERQKTELKQ----KCHIVVGTPGRVLDHIEKGTFPLEKLKYLVIDEADKMLN 160

Query: 407 --GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI-DISKITEKPAGRKP--IKTV 461
              + Q   + +      + ++ +   P  +   SL  + D  KI  K  G     I+  
Sbjct: 161 MGFIDQVGAIIRHLPEERLTMLFSATFPEDVEQLSLQYMKDPLKIEMKAGGTTTADIEHQ 220

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SI 518
           +I ++  D     + +++ E   +  +           F    E+ N L           
Sbjct: 221 LIIVDENDPFSLLVDLIIVENPDSCIV-----------FCRTQEQVNELQRRLAGLGYPC 269

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A IHG M   D+ +VM+ F+ G  + LIAT V   GID+ + + +I         + +H+
Sbjct: 270 AKIHGGMPQEDRFAVMNRFRRGAFRYLIATDVAARGIDIENITHVINYELPLDQESYVHR 329

Query: 579 LRGRVGRGEEISSCILLYHP 598
             GR GR       I L  P
Sbjct: 330 T-GRTGRAGSRGKAITLASP 348


>gi|307705294|ref|ZP_07642156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
 gi|307621081|gb|EFO00156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
          Length = 520

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 133/335 (39%), Gaps = 38/335 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    +     +   EA  QA+++AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I+   L        IL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLN 157

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G  + ++           +++  P  R  +L S    D  K       ++P    I   
Sbjct: 158 MGFLEDIEA----------IISRVPESRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK 207

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI----- 520
               E++++  + + E +K +    ++ + ++     V  R     +  T  + I     
Sbjct: 208 ELTTELVDQYYIRVKEQEK-FATMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRA 266

Query: 521 --IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +H+
Sbjct: 267 EGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 326

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + GR GR  +    I    P    N    L +++N
Sbjct: 327 I-GRTGRAGKSGQSITFVSP----NEMGYLQIIEN 356


>gi|306829013|ref|ZP_07462204.1| DNA replication factor Y [Streptococcus mitis ATCC 6249]
 gi|304428818|gb|EFM31907.1| DNA replication factor Y [Streptococcus mitis ATCC 6249]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++ +     V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGEK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVIIIDEEHESSYKQ 393


>gi|259501640|ref|ZP_05744542.1| DNA replication factor Y [Lactobacillus iners DSM 13335]
 gi|302191153|ref|ZP_07267407.1| Primosomal protein N' [Lactobacillus iners AB-1]
 gi|259166925|gb|EEW51420.1| DNA replication factor Y [Lactobacillus iners DSM 13335]
          Length = 796

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q++A+  I Q + +KN    +L+G  GSGKT V L A+A  ++    A+++ P I +  Q
Sbjct: 264 QQAALDQINQQIVRKNAKTFLLEGITGSGKTEVYLHAIAECLKNNKSALMLVPEIALTPQ 323

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
              +   ++ ++    V ++   + +  +     RI + + H+++G   A+F        
Sbjct: 324 MVNQVKSRFGKD----VAVLHSALSEGEKYDEWCRIRNQETHVVVGARSAIFAPLTN--- 376

Query: 395 LILVIVDEQHRFGVQQ 410
           + L+I+DE+H    +Q
Sbjct: 377 IGLIIIDEEHEASYKQ 392


>gi|167752757|ref|ZP_02424884.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216]
 gi|167659826|gb|EDS03956.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216]
          Length = 393

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 121/296 (40%), Gaps = 29/296 (9%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHGQA 376
           +A+I+ P   LA Q  +    Y +   +    I G + Q  + +AL           G+ 
Sbjct: 96  RALILTPTRELAVQIGDSFSDYGKYVGLKHLTIFGGVKQGPQVEALRGGVDILIATPGRL 155

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TL 435
           H +IG   +  D+I ++     ++DE  R        L     A    L+   P  R TL
Sbjct: 156 HDLIGQRFVELDAITHF-----VLDEADRM-------LDMGFVADIKRLLPLLPKSRQTL 203

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPI-NRIDEVIERLKVVLSEGKKAYWICPQIEE 494
             ++    DI  ++ K     P++  + P+ + +D + +R+  V    KK   +    EE
Sbjct: 204 FFSATMPADIVALS-KSMLTDPVRVEVTPVASAVDAIDQRVYFVEKPEKKKLLVSLLREE 262

Query: 495 KKE----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            K     S  +   +  + L          IHG  S   ++ V+  FK+G  ++++AT +
Sbjct: 263 DKSVLVFSRTKHGADNISRLLSKSGIRSEAIHGNKSQNHRQRVLTDFKSGKIRVMVATDI 322

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKN 603
              GID+ +  I+I  +        +H++ GR GR     + +    P   PL K+
Sbjct: 323 AARGIDIRELEIVINYDLPDVPETYVHRI-GRTGRAGHSGTALTFCTPDERPLMKD 377


>gi|167627672|ref|YP_001678172.1| DEAD/DEAH box helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597673|gb|ABZ87671.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 362

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 135/314 (42%), Gaps = 33/314 (10%)

Query: 298 LQGDVGSGKTLVALIAMAAAV----EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           L+   GSGKTL  ++ +   +    +   Q V   P   LA Q   FI +   +  I   
Sbjct: 43  LKSPTGSGKTLAYILPIMNKLLIDKKPLTQVVFFTPTHELAIQISNFINETFSSIGIKSL 102

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHRFGV 408
            + G      +++ L++    + +I++G+       + Q  ++   L   I+DE  R   
Sbjct: 103 ALIGKASIDRQKEKLKK----KPNIVVGSVGRILELIDQKKLKATHLQYCIIDEADRMLE 158

Query: 409 QQRLKLTQ----KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
              LKL +    K T    +L +AT       + S   I+  ++ +    ++ I+   I 
Sbjct: 159 DDSLKLLKQIISKTTNLQYILGSATIKNHAFDIAS-SFIENLELIDNSKEKETIEHSYIT 217

Query: 465 I--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
              NR  + + +L   +S  K   ++       + ++   V ++ + L       +  IH
Sbjct: 218 ADGNRKTDTLRKLLNKISPSKSIVFL------HRNNDVDFVTKKIDKLE----CGVGSIH 267

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-G 581
           G  + ID+ + +  FK+G  K+L+A+ V   G+D+ D   +I  N +    A+ +Q R G
Sbjct: 268 GEQNKIDRANTIKKFKSGQIKVLVASDVAARGLDINDVDFVI--NYDIPSKAEDYQHRAG 325

Query: 582 RVGRGEEISSCILL 595
           R GR  +  + IL+
Sbjct: 326 RTGRMGKSGNSILI 339


>gi|145299438|ref|YP_001142279.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852210|gb|ABO90531.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 613

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 132/321 (41%), Gaps = 39/321 (12%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEI 354
           Q   G+GKT    + + + +EAG    Q +++AP   LA Q  E  ++Y ++     V  
Sbjct: 51  QAQTGTGKTAAFALPLLSRLEAGNRNTQVLVLAPTRELALQVAEACQRYAKHMPDFHVLP 110

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRF 406
           I G      + +AL R     A +++GT     D I+           L+L   DE  R 
Sbjct: 111 IYGGSSYETQTRALRR----GAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRM 166

Query: 407 GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDID-------ISKITEKPAGRKP 457
           G    +   + Q  +   V L +AT +P  +   +   +        +SK +  P  R+ 
Sbjct: 167 GFIDDVDWIMEQCPSTRQVALFSAT-MPDQIRRVAQKHLKQPKEIKIVSKTSTAPTIRQR 225

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
              V   ++++D +   L+V   E  +A  +  + +   E     +  R ++        
Sbjct: 226 YWQV-TGLHKLDAMTRLLEV---EPYEAVLVFVRTKNAAEELAGKLAARGHACE------ 275

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              +HG +    +E  +D  + G   +LIAT V+  G+DV   + ++  +  +   + +H
Sbjct: 276 --ALHGDIPQKLRERTVDKLRQGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVH 333

Query: 578 QLRGRVGRGEEISSCILLYHP 598
           ++ GR GR       IL   P
Sbjct: 334 RI-GRTGRAGRKGEAILFVAP 353


>gi|126738873|ref|ZP_01754569.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
 gi|126720054|gb|EBA16761.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
          Length = 463

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 134/344 (38%), Gaps = 48/344 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILA-QQHYEFIKKYTQ 346
           ++    GSGKT+   +A+A  V          A   A+++AP   LA Q   E    Y +
Sbjct: 67  LVSAQTGSGKTVGFGLAIADTVLGEDDRFAAAAAPLALVIAPTRELALQVKRELAWLYGE 126

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVD 401
              ++   + G M     R+AL+R     AH+++ T    +D     SI    L  V++D
Sbjct: 127 AGAVVASCV-GGMDMRDERRALDR----GAHLVVATPGRLRDHIMRGSIDLSDLRAVVLD 181

Query: 402 EQHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           E       G ++ L+  L +       LL +AT  P    L      D  +I+       
Sbjct: 182 EADEMLDLGFREDLEFILGEAPEERQTLLFSATVPPAIEHLARSYQRDAKRIS------- 234

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSLHE 512
              TV       D   + + V   +G  A     +  E   +    N R++V R  S   
Sbjct: 235 ---TVAETSQHSDIDYQAMLVSQRDGDNAIINVLRFYEAPNAIVFCNTRAMVNRLLSRLS 291

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   ++  + G +S  ++   + + ++G  ++ +AT V   GID+ +  ++I     H  
Sbjct: 292 NRGFAVVALSGELSQAERSHALQAMRDGRARVCVATDVAARGIDLPNLELVI-----HAE 346

Query: 573 LAQLHQL----RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           L   H+      GR GR        L+  P   K +   L + K
Sbjct: 347 LPSSHETLLHRSGRTGRAGRKGVSALVVSPKSRKKAERLLKMAK 390


>gi|332981561|ref|YP_004463002.1| primosomal protein N' [Mahella australiensis 50-1 BON]
 gi|332699239|gb|AEE96180.1| primosomal protein N' [Mahella australiensis 50-1 BON]
          Length = 735

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 19/202 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P + Q  AI  I + + +      +L G  GSGKT V L A+  A++ G  A+++ P I 
Sbjct: 200 PVQQQLQAITAINKAVDEGEGAF-LLHGVTGSGKTEVYLQAIQHAMDIGKDAIVLVPEIS 258

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q    F  ++  +    V +    +    +     RI +GQA +++G  +     +Q
Sbjct: 259 LTPQMVALFTARFGSS----VAVWHSRLSMGEKYAQWWRIKNGQAQVVVGARSAVFAPVQ 314

Query: 392 YYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
             +L L+++DE+           ++  ++  K      A  ++L +ATP   T      G
Sbjct: 315 --RLGLIVLDEEQESSYKSDMTPKYDAREVAKRRCDIEAGVLVLGSATPSLETYYAAGKG 372

Query: 442 DIDISKITEKPAGRKPIKTVII 463
           D+ +  + ++  G KP+  V I
Sbjct: 373 DMRLLVMPDRING-KPLPHVDI 393


>gi|325911751|ref|ZP_08174158.1| primosomal protein N' [Lactobacillus iners UPII 143-D]
 gi|325476517|gb|EGC79676.1| primosomal protein N' [Lactobacillus iners UPII 143-D]
          Length = 796

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q++A+  I Q + +KN    +L+G  GSGKT V L A+A  ++    A+++ P I +  Q
Sbjct: 264 QQAALDQINQQIVRKNAKTFLLEGITGSGKTEVYLHAIAECLKNNKSALMLVPEIALTPQ 323

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
              +   ++ ++    V ++   + +  +     RI + + H+++G   A+F        
Sbjct: 324 MVNQVKSRFGKD----VAVLHSALSEGEKYDEWCRIRNQETHVVVGARSAIFAPLTN--- 376

Query: 395 LILVIVDEQHRFGVQQ 410
           + L+I+DE+H    +Q
Sbjct: 377 IGLIIIDEEHEASYKQ 392


>gi|312874625|ref|ZP_07734649.1| primosomal protein N' [Lactobacillus iners LEAF 2053A-b]
 gi|311089855|gb|EFQ48275.1| primosomal protein N' [Lactobacillus iners LEAF 2053A-b]
          Length = 796

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q++A+  I Q + +KN    +L+G  GSGKT V L A+A  ++    A+++ P I +  Q
Sbjct: 264 QQAALDQINQQIVRKNAKTFLLEGITGSGKTEVYLHAIAECLKNNKSALMLVPEIALTPQ 323

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
              +   ++ ++    V ++   + +  +     RI + + H+++G   A+F        
Sbjct: 324 MVNQVKSRFGKD----VAVLHSALSEGEKYDEWCRIRNQETHVVVGARSAIFAPLTN--- 376

Query: 395 LILVIVDEQHRFGVQQ 410
           + L+I+DE+H    +Q
Sbjct: 377 IGLIIIDEEHEASYKQ 392


>gi|257886040|ref|ZP_05665693.1| primosomal protein N [Enterococcus faecium 1,231,501]
 gi|257821896|gb|EEV49026.1| primosomal protein N [Enterococcus faecium 1,231,501]
          Length = 802

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 7/135 (5%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q++A++ I+    Q+   + +L+G  GSGKT V L A+A  +     A+++ P I +  Q
Sbjct: 269 QKNAVEQIITAGQQQKDQVFLLEGITGSGKTEVYLQAIADVLSENKTAIMLVPEIALTPQ 328

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
               F  ++ ++    V ++   + Q  +     +I   +A +++G  +     ++   +
Sbjct: 329 MVERFKGRFGES----VAVLHSGLSQGEKYDEWRKIEREEAQVVVGARSAIFAPLK--NI 382

Query: 396 ILVIVDEQHRFGVQQ 410
            L+IVDE+H    +Q
Sbjct: 383 GLIIVDEEHESSYKQ 397


>gi|257467968|ref|ZP_05632064.1| SNF2-related protein [Fusobacterium ulcerans ATCC 49185]
 gi|317062254|ref|ZP_07926739.1| helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313687930|gb|EFS24765.1| helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 1030

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 13/152 (8%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           IL  D+G GKTL  +   +A  E  G  +++AP  ++     EF KK+     + V+II 
Sbjct: 609 ILADDMGLGKTLQIISYFSAIEEQKGLKLVIAPKALMYNWRNEF-KKFA--PHLSVKIIE 665

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV---IVDEQHRFG--VQQR 411
           G +  A R++ +E    G   I+I T+      + +YK I +   ++DE       + + 
Sbjct: 666 GEI--AARKRKIENSKPGD--ILISTYGFLNKDMDFYKDISIDTLVIDEAQNIKNYMSKT 721

Query: 412 LKLTQKATAPHVLLMTATPIPRT-LVLTSLGD 442
               ++  A   + +T TPI    L L S+ D
Sbjct: 722 ASCVKEIKADIRIALTGTPIENNALELWSIFD 753


>gi|256851320|ref|ZP_05556709.1| primosomal protein N [Lactobacillus jensenii 27-2-CHN]
 gi|260660744|ref|ZP_05861659.1| primosomal protein N [Lactobacillus jensenii 115-3-CHN]
 gi|282933235|ref|ZP_06338622.1| primosomal protein N' [Lactobacillus jensenii 208-1]
 gi|297206190|ref|ZP_06923585.1| DNA replication factor Y [Lactobacillus jensenii JV-V16]
 gi|256616382|gb|EEU21570.1| primosomal protein N [Lactobacillus jensenii 27-2-CHN]
 gi|260548466|gb|EEX24441.1| primosomal protein N [Lactobacillus jensenii 115-3-CHN]
 gi|281302739|gb|EFA94954.1| primosomal protein N' [Lactobacillus jensenii 208-1]
 gi|297149316|gb|EFH29614.1| DNA replication factor Y [Lactobacillus jensenii JV-V16]
          Length = 797

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 68/138 (49%), Gaps = 7/138 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
            + Q +A++ I + + +      +L+G  GSGKT V L A++ A++ G  A+++ P I +
Sbjct: 262 NQEQTAALQKINKSIEKSEAKTYLLEGITGSGKTEVYLHAISNALQKGKNALMLVPEISL 321

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
             Q   +   ++ +     V ++   + +  +     RI  G+A +++G  +     +  
Sbjct: 322 TPQMVSQVNARFGKE----VAVLHSGLSEGEKYDEWRRIRRGEARVVVGARSAIFAPLS- 376

Query: 393 YKLILVIVDEQHRFGVQQ 410
             + L+I+DE+H    +Q
Sbjct: 377 -NIGLIIIDEEHEASYKQ 393


>gi|241618030|ref|XP_002408280.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215502947|gb|EEC12441.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 1025

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 131/317 (41%), Gaps = 53/317 (16%)

Query: 302 VGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+ M   +        + G  AVIM P   LA Q  +  KK+T++  + V 
Sbjct: 395 TGSGKTLAFLLPMFRHILDQPPLEDDDGPIAVIMTPTRELAMQITKDCKKFTKSLSLRVV 454

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G    + +   L+R     A II+ T     D +         + +   V++DE  R
Sbjct: 455 CVYGGTGISEQIADLKR----GAEIIVCTPGRMIDMLAANNGRVTNFRRTTYVVLDEADR 510

Query: 406 F---GVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP-----AGR- 455
               G + Q +++          +M +   PR +   +       +I  KP      GR 
Sbjct: 511 MFDMGFEPQVMRIVDSVRPDRQTVMFSATFPRQMEALA------RRILMKPIEILVGGRS 564

Query: 456 ---KPIKTVIIPINRIDE---VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              K ++  I+ IN  D+   ++E L +   +G    ++     +K+E     + +   +
Sbjct: 565 VVCKEVEQHIVIINDEDKFFKLLELLGLYQDKGSAIVFV-----DKQEHADVLLKDLMKA 619

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            H         +HG +   D++S +  FK G   +LIAT+V   G+DV    +++  +  
Sbjct: 620 SHNAMA-----LHGGIDQFDRDSTIVDFKAGKVGVLIATSVAARGLDVKHLILVVNYDCP 674

Query: 570 HFGLAQLHQLRGRVGRG 586
           +     +H+  GR GR 
Sbjct: 675 NHYEDYVHRC-GRTGRA 690


>gi|196039972|ref|ZP_03107275.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|196029231|gb|EDX67835.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
          Length = 458

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|119186019|ref|XP_001243616.1| hypothetical protein CIMG_03057 [Coccidioides immitis RS]
 gi|118574937|sp|Q1E306|ROK1_COCIM RecName: Full=ATP-dependent RNA helicase ROK1
          Length = 730

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 23/153 (15%)

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           +S IA++H  +SD  +  VM  F+ G   +LI T ++  G+D    + ++  +  +   +
Sbjct: 531 SSRIAVLHSELSDSKRSDVMAGFRKGEIWVLITTDLLARGVDFRGINGVVNYDIPNSSAS 590

Query: 575 QLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
            +H++ GR GR G E    +  Y       +   +  +KN  +  + A E+L+  +EGE 
Sbjct: 591 YVHRV-GRTGRAGREGGVAVTFY-------TKEDIPYVKNIAN-VISASENLRGTEEGER 641

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           +       PK+L+      D+L  +++ D K +
Sbjct: 642 I-------PKWLL------DALPSLSKNDKKDL 661


>gi|322494127|emb|CBZ29424.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 622

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 67/332 (20%), Positives = 143/332 (43%), Gaps = 54/332 (16%)

Query: 302 VGSGKTLVALI-------------AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
            GSGKT   LI             +     ++   A++++P   L+ Q YE  +K+T  T
Sbjct: 187 TGSGKTAAYLIPAINFMLVNNLNRSKPTNSQSAPSALVLSPTRELSIQIYEEGRKFTYRT 246

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQ 403
            I   ++ G     H+   L R       +++ T     D       +Y  +  +++DE 
Sbjct: 247 GIRCVVVYGGADPRHQIHELTR----GCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEA 302

Query: 404 HRF---GVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEK------ 451
            R    G + +++   +         +  P P   +TL+ ++    +I ++  +      
Sbjct: 303 DRMLDMGFEPQIRAIVQGPD------SDMPPPGERQTLLYSATFPKEIQQMAREFLYHHH 356

Query: 452 --PAGR--KPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
               GR     + +   +  +++V +R  L  VL E  +   +   +E+K+++++   +E
Sbjct: 357 FLQVGRVGSTTENITQDVRWVEDVDKRGCLLEVLKE-HQGERVLVFVEKKRDADY---LE 412

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           R+        SSI   HG     ++E  +D FK+G C++L+AT V   G+D+ + ++++ 
Sbjct: 413 RYLRQSRIPCSSI---HGDRVQREREEALDIFKSGVCRVLVATDVASRGLDIPNVAVVVQ 469

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +        +H++ GR GR  +  + +  ++
Sbjct: 470 YDLPSNIDDYVHRI-GRTGRAGKRGTALSFFN 500


>gi|310642741|ref|YP_003947499.1| primosomal protein n [Paenibacillus polymyxa SC2]
 gi|309247691|gb|ADO57258.1| Primosomal protein N [Paenibacillus polymyxa SC2]
          Length = 858

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P   T  Q+S  + I++ +  + +   +L G  GSGKT + L  +   +E   QA+++ P
Sbjct: 300 PLPLTAEQQSVYERIVRQLDIREQGAYLLHGVTGSGKTEIYLQTIQRCIEQNRQAIVLVP 359

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++     ++   ++G      R     +I  G+  + IG   A+F 
Sbjct: 360 EISLTPQMVERFKGRFGDQVAVMHSRLSG----GERYDEWRKIREGRVKVAIGARSAVF- 414

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               + +L L+I+DE+H    +Q
Sbjct: 415 --APFRELGLIIMDEEHETSYKQ 435


>gi|309806373|ref|ZP_07700386.1| primosomal protein N' [Lactobacillus iners LactinV 03V1-b]
 gi|308167357|gb|EFO69523.1| primosomal protein N' [Lactobacillus iners LactinV 03V1-b]
          Length = 796

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q++A+  I Q + +KN    +L+G  GSGKT V L A+A  ++    A+++ P I +  Q
Sbjct: 264 QQAALDQINQQIVRKNAKTFLLEGITGSGKTEVYLHAIAECLKNNKSALMLVPEIALTPQ 323

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
              +   ++ ++    V ++   + +  +     RI + + H+++G   A+F        
Sbjct: 324 MVNQVKSRFGKD----VAVLHSALSEGEKYDEWCRIRNQETHVVVGARSAIFAPLTN--- 376

Query: 395 LILVIVDEQHRFGVQQ 410
           + L+I+DE+H    +Q
Sbjct: 377 IGLIIIDEEHEASYKQ 392


>gi|271499989|ref|YP_003333014.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270343544|gb|ACZ76309.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 732

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 140/350 (40%), Gaps = 56/350 (16%)

Query: 277 QESAIKDIL---QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVI-MAPI 330
           QESAI  +L   QD+        ++     +GKT    +   +A+    GG  +I ++P+
Sbjct: 28  QESAIPIVLARDQDV--------LISAGTAAGKTEAFFLPACSAISDITGGFGIIYISPL 79

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT----HALF 386
             L    Y  ++   +   + V    G++PQ+ ++K    I    A I++ T     +L 
Sbjct: 80  KALINDQYRRLESLGEVLDMPVTPWHGDVPQSKKKK----IRTDPAGILLITPESLESLL 135

Query: 387 QDSIQYYK-----LILVIVDEQHRF-GVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTS 439
            +S  + K     +  +++DE H F G ++ ++L        HVL   A P+PR  +  +
Sbjct: 136 INSSGWIKQAFSPVAYIVIDEFHAFIGTERGMQLLSLLNRIDHVLGRHANPVPRVALSAT 195

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRID----------EVIERLKVVLSEGKKAYWIC 489
           LG++D      +P  R P K V    N              V E+ +   S  +K   +C
Sbjct: 196 LGELDKVPELLRPDQRLPCKIVTDSNNTATLQVQVKGYQVPVPEKGEEPQSSAEKH--VC 253

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAII-------------HGRMSDIDKESVMDS 536
             I      +   V        E   ++++ I             HG +S   +E++   
Sbjct: 254 ADIFRLCRGDSHLVFANSRKRTESIAATLSDICEENVVPNEFFPHHGSLSRELRETLEAR 313

Query: 537 FKNGTC-KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            + G      + T  +E+GID+     +I     H  ++ L Q  GR GR
Sbjct: 314 LQQGNLPTTAVCTMTLELGIDIGKVQSVIQVTPPH-SVSSLRQRMGRSGR 362


>gi|258422918|ref|ZP_05685818.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
 gi|257846942|gb|EEV70956.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
          Length = 506

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 156/376 (41%), Gaps = 60/376 (15%)

Query: 249 KEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGK 306
           KE+GI  N       + L ++ F  PT  Q+ +I   LQ +        IL Q   G+GK
Sbjct: 5   KELGISDNT-----VQSLESMGFKEPTPIQKDSIPYALQGID-------ILGQAQTGTGK 52

Query: 307 TLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           T    I +   V  + G Q++I+AP   LA Q  E ++++++   + V  + G MP   +
Sbjct: 53  TGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQ 112

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQ 416
            KAL++       I++GT     D +          + LIL   DE    G    ++   
Sbjct: 113 IKALKK----GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIM 168

Query: 417 K---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
               A     +L +AT +P+ +         + +  + P   K IKT+   ++  D  IE
Sbjct: 169 DKIPAAQRQTMLFSAT-MPKAIQAL------VQQFMKSP---KIIKTMNNEMS--DPQIE 216

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-------AIIHGRMS 526
               ++ E +K +       +  +     V  R     +  TS++         +HG ++
Sbjct: 217 EFYTIVKELEK-FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDIT 275

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGR 582
              +  V+  FKN    +L+AT V   G+D+   S +    I ++ E +     H++ GR
Sbjct: 276 QAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY----THRI-GR 330

Query: 583 VGRGEEISSCILLYHP 598
            GR  +    +   +P
Sbjct: 331 TGRAGKEGIAVTFVNP 346


>gi|213966785|ref|ZP_03394936.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
 gi|301383294|ref|ZP_07231712.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato Max13]
 gi|302062467|ref|ZP_07254008.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato K40]
 gi|302133449|ref|ZP_07259439.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213928635|gb|EEB62179.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
          Length = 442

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 141/344 (40%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGG--Q 323
           +PT  Q  AI  +L       R L +     G+GKT      L+  + M     A    +
Sbjct: 23  TPTPVQTQAIPPVL-----AGRDL-MAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNSIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHII 379
           A+++AP   LA Q +E I++Y ++  +      G +   PQ  + RK ++ +      ++
Sbjct: 77  ALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPGRLL 136

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP---HVLLMTATPIP- 432
                  Q +I++ +L  +I+DE  R    G  + L+    A  P     LL +AT    
Sbjct: 137 ---DLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIY-AVLPKQRQTLLFSATFSDE 192

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L    L D    +++ +      +K  ++ +++      +  + +   KK  W    
Sbjct: 193 IRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKK----RKADLFIHLMKKHRWGQVL 248

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +  K       +V+R   L  +       IHG      ++  +D FK+   K+L+AT V 
Sbjct: 249 VFAKTRVGVDQLVDRLQGLGLNADG----IHGDKPQATRQRALDRFKSNEVKILVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             G+D+ D   ++  +        +H++ GR GR  +    I L
Sbjct: 305 ARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGQTGEAISL 347


>gi|28871796|ref|NP_794415.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855048|gb|AAO58110.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 442

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 141/344 (40%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGG--Q 323
           +PT  Q  AI  +L       R L +     G+GKT      L+  + M     A    +
Sbjct: 23  TPTPVQTQAIPPVL-----AGRDL-MAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNSIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHII 379
           A+++AP   LA Q +E I++Y ++  +      G +   PQ  + RK ++ +      ++
Sbjct: 77  ALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPGRLL 136

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP---HVLLMTATPIP- 432
                  Q +I++ +L  +I+DE  R    G  + L+    A  P     LL +AT    
Sbjct: 137 ---DLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIY-AVLPKQRQTLLFSATFSDE 192

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L    L D    +++ +      +K  ++ +++      +  + +   KK  W    
Sbjct: 193 IRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKK----RKADLFIHLMKKHRWGQVL 248

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +  K       +V+R   L  +       IHG      ++  +D FK+   K+L+AT V 
Sbjct: 249 VFAKTRVGVDQLVDRLQGLGLNADG----IHGDKPQATRQRALDRFKSNDVKILVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             G+D+ D   ++  +        +H++ GR GR  +    I L
Sbjct: 305 ARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGQTGEAISL 347


>gi|82751078|ref|YP_416819.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
 gi|82656609|emb|CAI81033.1| probable ATP-dependent DNA helicase [Staphylococcus aureus RF122]
          Length = 459

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 158/379 (41%), Gaps = 63/379 (16%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEF 340
           ++I++ +  +   L IL    GSGK+L   I    +   G   +I++P I ++  Q    
Sbjct: 20  QEIIESIMSQQHTLGILP--TGSGKSLCYQIPTYLS---GKSTLIISPLISLMDDQ---- 70

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI---- 396
           + +   N +  V  I   M +  ++  ++ + H +  I +    L Q S   +KLI    
Sbjct: 71  VMQLKINGEKRVTCIHSGMDEIEKKHNIKCLRHSR-FIFLSPEFLLQPS--NFKLISMID 127

Query: 397 --LVIVDEQH---RFGVQQRL------KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             ++++DE H    +G   R       K+T+      VL +TAT  P       L D   
Sbjct: 128 FGMIVLDEAHCLSEWGYDFRPHYALIGKVTKHFKDAVVLALTATAPPH------LQD--- 178

Query: 446 SKITEKPAGR-KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NF 500
             +TE  A +   IKT +   NR +   + L     E  K  W+ P +++   +    + 
Sbjct: 179 -DLTEMLAIQFNVIKTTM---NRPNISFKHLNFNDDE-DKIEWLLPFLQQSGPTIIYVSS 233

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           + V      L         I HG M+  ++ +V   F N    +++AT+   +GI+  D 
Sbjct: 234 KKVCLNLAQLIYDTGFLTGIYHGDMNYQERHTVQQQFLNNDIPIIVATSAFGMGINKKDI 293

Query: 561 SIIIIENAEHFGL----AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
             II     HF L    +   Q  GR GR  E+S  I L+ P    + Y    +L+    
Sbjct: 294 RTII-----HFHLSTSPSNYIQEIGRAGRDGELSQAISLFQP---DDKY----ILETLLF 341

Query: 617 GFLIAEEDLKQRKEGEILG 635
             +I EED++  + GE L 
Sbjct: 342 ADMITEEDVQNFEIGEFLA 360


>gi|88857246|ref|ZP_01131889.1| RNA helicase DeaD [Pseudoalteromonas tunicata D2]
 gi|88820443|gb|EAR30255.1| RNA helicase DeaD [Pseudoalteromonas tunicata D2]
          Length = 624

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 510 LHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           L EH  S     + ++G M   D+E +++  KNG   +LIAT V+  G+DV   + +I  
Sbjct: 262 LAEHLVSKGFKASALNGDMQQQDRERIVEQLKNGRINILIATDVVARGLDVPRITHVINY 321

Query: 567 NAEHFGLAQLHQLRGRVGR-GEEISSCILLYH 597
           +  H   + +H++ GR GR G E  + +   H
Sbjct: 322 DLPHDSESYVHRI-GRTGRAGREGEAILFASH 352


>gi|150019837|ref|YP_001312091.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149906302|gb|ABR37135.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 525

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 165/392 (42%), Gaps = 59/392 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           I Q   G+GKT    + +   +    G +++I+AP   LA Q  E I++ ++  +I+   
Sbjct: 45  IGQAQTGTGKTAAYSLPIITKMSDNRGIKSLILAPTRELAVQVNEEIQRLSKYEKIVTLA 104

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQH 404
           + G      + +AL +   G   I++GT            L  +SI++  L+L   DE  
Sbjct: 105 VYGGDSIDRQIRALRK---GDVDIVVGTPGRILDLVKRKCLHLESIEF--LVLDEADEML 159

Query: 405 RFGVQQRLK--LTQKATAPHVLLMTAT---PIPRTLVLTSLGDIDISKITEKPAGR-KPI 458
             G    ++  L+   +    LL +AT   PI +           ++K   KP  +   I
Sbjct: 160 NMGFIDDIQEILSHTPSERQTLLFSATMPDPIAK-----------LAKKYMKPDAKLVSI 208

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFT 515
           K   + +++I    E+   +++   +   +C  ++    S+   F       + L +   
Sbjct: 209 KRSSLTVSKI----EQSYFMINNKHRLEALCRLLDLDNPSSAIIFCRTKRGVDELVQELQ 264

Query: 516 SS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           S    +  +HG M+   + + ++ FK GT  LLIAT V   GIDV   + +   +     
Sbjct: 265 SKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNLLIATDVAARGIDVEGVTHVFNYDLPQDV 324

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE-----EDLKQ 627
            + +H++ GR GR  +  +   L  P      ++ L  ++N     +  +     E++  
Sbjct: 325 ESYVHRI-GRTGRANKSGTAYSLVTP----KDFSMLKQIQNVTKSSITQKPVPTAEEINN 379

Query: 628 RKEGEILG-----IKQSGMPKFLIAQPELHDS 654
           +K  +++      IK   + KF+ +  EL +S
Sbjct: 380 KKFKDMMSEVESTIKAGDLTKFIPSAIELTES 411


>gi|82793376|ref|XP_728014.1| ATP-dependent DNA helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23484151|gb|EAA19579.1| ATP-dependent DNA helicase-related [Plasmodium yoelii yoelii]
          Length = 629

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L E+   S++  H  +++  ++ + + + NGT K+L+AT    +GID  D S II     
Sbjct: 312 LRENGIQSLSY-HAGLTNNARKQIQEKWINGTIKILVATIAFGMGIDRKDVSYII----- 365

Query: 570 HFGL----AQLHQLRGRVGRGEEISSCILLY 596
           HF L       +Q  GR GR   I+ C L Y
Sbjct: 366 HFNLPKSIENYYQESGRAGRNGNIAFCYLYY 396


>gi|329666667|gb|AEB92615.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 479

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 154/365 (42%), Gaps = 46/365 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N++ +I + I R+     T  QE  I  +L++         I Q   G+GKT    + +
Sbjct: 1   MNLKPEILKAIKRSGFEEATPIQEKTIPLVLEEKDV------IGQAQTGTGKTAAFGLPI 54

Query: 315 AAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
              ++      QA+I+ P   LA Q  E + +  ++ +  V+++ G      + +AL++ 
Sbjct: 55  LQNLDKQHDSIQAIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQT 114

Query: 372 AHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLK-LTQKATAPH 422
                 I++GT     D     +I   K+  +++DE       G  Q ++ + + A++ H
Sbjct: 115 PA----ILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSKH 170

Query: 423 VLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
             L+ +  +P+ ++      + D +I KI  K           +  N ID+   R K   
Sbjct: 171 QTLLFSATMPKPILRIGEKFMNDPEIVKIKGKE----------LTANLIDQYFVRAK--- 217

Query: 480 SEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESV 533
            E +K   +C  I+ +       F     R + L     +   + A IHG +S   + SV
Sbjct: 218 -ENEKFDILCRLIDVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSV 276

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F+ G   +L+AT V   G+D+   S +   +      + +H++ GR GR  +    +
Sbjct: 277 LKRFRKGKLDILVATDVAARGLDISGVSHVYNYDIPQDPDSYVHRI-GRTGRAGQNGMSV 335

Query: 594 LLYHP 598
               P
Sbjct: 336 TFVTP 340


>gi|323489782|ref|ZP_08095007.1| RNA helicase-like protein [Planococcus donghaensis MPA1U2]
 gi|323396520|gb|EGA89341.1| RNA helicase-like protein [Planococcus donghaensis MPA1U2]
          Length = 386

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 137/324 (42%), Gaps = 66/324 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKTL  ++ +   V   +   QA+I+AP   L+ Q    ++++T+ T + V 
Sbjct: 41  VAESPTGSGKTLAYVLPILERVNPEKPAIQAMIVAPSQELSMQIVNVLREWTEGTAVTVT 100

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGV 408
            + G    A+ ++ LE++   +  I++GT     + ++  KL +     +++DE  +   
Sbjct: 101 QLIGG---ANMQRQLEKLKK-KPTIVVGTPGRLNELVKTKKLKMHEIRMLVLDEGDQLMA 156

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           ++   + +        L+  T   R LVL S      + ITE+         + +   R+
Sbjct: 157 REHRNIMKD-------LIEKTQHDRQLVLVS------ATITEE---------IELVAERL 194

Query: 469 DEVIERLKVVLSE----GKKAYWICPQIEEKKESNFRSV--------VERFNSLHEHFT- 515
            +   RLKV   +    GK  +      E  K    RS+        +   N+L +    
Sbjct: 195 MQHPTRLKVTAEDLPMFGKVTHSFIKVDERDKTELLRSISHIPGMKALAFVNNLDQLLMK 254

Query: 516 --------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                   + I  +H  M   +++  +D+F+ G   +LIAT V   G+D     I ++ +
Sbjct: 255 ENKLKFRDAKIVTLHSEMKKDERKKALDAFRKGEVAVLIATEVAARGLD-----IDLVTH 309

Query: 568 AEHFGLAQ-----LHQLRGRVGRG 586
             H  + Q     LH+  GR GR 
Sbjct: 310 VVHVDVPQTIEQYLHR-SGRTGRA 332


>gi|322712055|gb|EFZ03628.1| hypothetical protein MAA_00702 [Metarhizium anisopliae ARSEF 23]
          Length = 699

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 32/178 (17%)

Query: 500 FRSVVERFNSLHEHFT----------SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           F   ++R  +LHE             S IA +H  ++D  + S+M  F+ G   +LI T 
Sbjct: 484 FTQTIDRAMALHEELKYDIPLEAGGPSRIAALHSALADSARSSIMRKFRAGEIWVLITTD 543

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRL 608
           V+  G+D    + ++  +      A +H+  GR GR G      + LY    +K     +
Sbjct: 544 VLARGVDFAGVNGVVNYDVPGSAAAYVHRA-GRTGRAGRAGGIAVTLY----TKEDIPFV 598

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
             + N     +IA  D +  + G+     Q+G+ K+L+      D+L  + + D K +
Sbjct: 599 KTVAN-----VIAVSDKQAGRTGD-----QAGVQKWLL------DALPNVGKDDRKKL 640


>gi|298706995|emb|CBJ29803.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 402

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 137/336 (40%), Gaps = 49/336 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV---ALIAMAAAVEAGGQAVIMAP 329
           P+  Q+ A+K I            I Q   G+GKT V    ++ M     +  QA++++P
Sbjct: 52  PSAVQQRAVKPITSGRDV------IAQSQSGTGKTAVFSMGILQMLDTTSSDTQALVLSP 105

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  + I        +      G        + + R+ +G   ++ GT     D 
Sbjct: 106 TRELAEQTQKVILALGDFMNVQCHACIGGKSIG---EDIRRLDYG-VQVVSGTPGRVFDM 161

Query: 390 IQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+           L++   DE    G ++++    +   P   V+L++AT     L +T 
Sbjct: 162 IRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMT- 220

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW----ICPQIEEK 495
                      K     P+K   I + R +  +E +K      +K  W    +C   +  
Sbjct: 221 -----------KKFMNMPVK---ILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL 266

Query: 496 KES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +      N +  V+   +       +++ +HG M   +++++M+ F++G  ++LIAT 
Sbjct: 267 TVTQAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRVLIATD 326

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           V   G+DV   S++I  +  +     +H++ GR GR
Sbjct: 327 VWGRGLDVQQVSLVICYDLPNNRELYIHRI-GRSGR 361


>gi|255726050|ref|XP_002547951.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404]
 gi|240133875|gb|EER33430.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404]
          Length = 665

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 127/306 (41%), Gaps = 63/306 (20%)

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++MAP   L  Q YE  KK++  + +   ++ G      + + L+R       +++ T  
Sbjct: 273 LVMAPTRELVSQIYEESKKFSYRSWVRPCVVYGGADIGQQMRNLDR----GCDLLVATPG 328

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRF-------------------GVQQRLKLTQKATA 420
             +D ++  K+ L     +++DE  R                     V  R  L   AT 
Sbjct: 329 RLKDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPEVTDRQTLMFSATF 388

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDIS--KITEK--PAGRKPIKTVIIPINRIDEVIERLK 476
           P  + M A    +  V  S+G +  +   IT+K      +  K+VI+ +   +E    L 
Sbjct: 389 PRDIQMLARDFLKDYVFLSVGRVGSTSENITQKILYVEDEDKKSVILDLLAANE--NGLT 446

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           +V +E K+   +  Q+     ++F         L++    + AI HG  S  ++E  + +
Sbjct: 447 IVFTETKR---MADQL-----ADF---------LYDQGFPATAI-HGDRSQYEREKALAA 488

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----LHQLRGRVGRGEEISS 591
           FKNG   +L+AT V   G+D+ +   +I     +F L       +H++ GR GR   +  
Sbjct: 489 FKNGAAPILVATAVAARGLDIPNVGHVI-----NFDLPSDIDDYVHRI-GRTGRAGNVGI 542

Query: 592 CILLYH 597
               ++
Sbjct: 543 ATSFFN 548


>gi|258516672|ref|YP_003192894.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780377|gb|ACV64271.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 896

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 74/349 (21%), Positives = 141/349 (40%), Gaps = 56/349 (16%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM--APIGILA 334
           Q  AI+ IL       R L I  G   SGK+LV ++     +     + ++  +P   L+
Sbjct: 50  QAKAIEQILL-----GRNLIITTG-TSSGKSLVYIVPAINCILNNSLSTVLYLSPAKALS 103

Query: 335 QQHYEFIKKYTQN-----TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           Q  Y+ I+K+ +      +  ++ +  G+ P   RR+ L R     ++II  T   +  S
Sbjct: 104 QNQYQNIEKFCKKILWPVSAPVISVCDGDTPLEERREILNR-----SNIIFSTPDFWHSS 158

Query: 390 -----IQY----YKLILVIVDEQHRF---------GVQQRLK--LTQKATAPHVLLMTAT 429
                I +      L L+I+DE H +          V +RL+       + P  +L +AT
Sbjct: 159 GLSRHIHWPGFLSNLQLIIIDEAHIYRGSLGNHVSHVLRRLRRLCYHYGSYPRFILCSAT 218

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEVIERLKVVLSEGKKAYWI 488
                    +L  +D   I ++ +       V I P    D+   ++K  LS  + A  +
Sbjct: 219 IANALEFAENLTGLDFVLIDKEGSHSAKKNFVFINPPQYQDKNSSQIKRKLSHYEAARIV 278

Query: 489 CPQIEEKK------------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              +   +            ES +R ++E +  +       +    G ++   +  +   
Sbjct: 279 GNYVRTGRRVINFGRSKQVVESAYRKLIEEYPDI----AGQVRPYKGTLTPETRREIEGK 334

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
             +G  K +I+T  +E+G+D+ D  + ++       ++ + Q  GRVGR
Sbjct: 335 LFDGMLKGIISTNALELGVDIGDLDVCVMSGFPG-SISSVWQQAGRVGR 382


>gi|229103076|ref|ZP_04233764.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28]
 gi|228680360|gb|EEL34549.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28]
          Length = 450

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 135/316 (42%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++      QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDTESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNFDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|193066966|ref|ZP_03047935.1| ATP-independent RNA helicase DbpA [Escherichia coli E110019]
 gi|192959556|gb|EDV89990.1| ATP-independent RNA helicase DbpA [Escherichia coli E110019]
          Length = 457

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 67/331 (20%), Positives = 125/331 (37%), Gaps = 66/331 (19%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+    +++ 
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVN 315

Query: 566 ENAEHFGLAQLHQLRGRVGR----GEEISSC 592
                   A +H++ GR  R    G  IS C
Sbjct: 316 FELAWDPEAHVHRI-GRTARAGNSGLAISFC 345


>gi|149239696|ref|XP_001525724.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451217|gb|EDK45473.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 1183

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 17/127 (13%)

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           S I    G  S  D+  +     +G  + ++AT  +E+GID+ D  ++I        L  
Sbjct: 656 SDIMSYRGGYSKSDRRIIEKKMFDGQLRAIVATNALELGIDLSDLDVVITCGFPVLKL-N 714

Query: 576 LHQLRGRVGRGEEISSCILLYHP--------------PLSKNSYTRLSV--LKNTEDGFL 619
           LHQ  GR GRG+  S  + ++ P               L + SY  L V  L++ E G L
Sbjct: 715 LHQQFGRAGRGKLASGSLAIFVPMRSPIDQYYIEHAHELPQRSYEDLCVDSLRDMEHGLL 774

Query: 620 IAEEDLK 626
           + E  L+
Sbjct: 775 LLERHLQ 781


>gi|116253340|ref|YP_769178.1| DEAD box ATP-dependent RNA helicase protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257988|emb|CAK09086.1| putative DEAD box ATP-dependent RNA helicase protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 576

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 122/295 (41%), Gaps = 30/295 (10%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHGQA 376
           + +I+AP   L  Q  E +KK+ + + + + ++ G +    ++  LE+         G+ 
Sbjct: 92  RTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQLEKGTDILVATPGRL 151

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRT 434
             +I   A+   +++Y  L+L   D+    G    L+   K        +L +AT +P+ 
Sbjct: 152 LDLINRRAITLTAVRY--LVLDEADQMLDLGFVHDLRKIAKMVPKKRQTMLFSAT-MPKA 208

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI-DEVIERLKVVLSEGKKAYWICPQIE 493
           +      D+    + +      P+K  + P  +  D+V + +  V  +  K   +   + 
Sbjct: 209 IA-----DLAGEYLVD------PVKVEVTPPGKAADKVEQYVHFVGGKNDKTELLRKSLT 257

Query: 494 EKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           E  +         +   E+     E+   S+A IHG  S   +E  + +F++G+ K LIA
Sbjct: 258 ENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTLIA 317

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           T V   GID+   S +   +      A +H++ GR  R       I    P  +K
Sbjct: 318 TDVAARGIDIPAVSHVYNYDLPEVPDAYVHRI-GRTARAGRDGIAIAFCAPDEAK 371


>gi|332366034|gb|EGJ43790.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059]
          Length = 523

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 131/335 (39%), Gaps = 38/335 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT          ++      QA+I+AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I        Q   LIL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLN 157

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G  + ++           +++  P  R  +L S    D  K       ++P    I   
Sbjct: 158 MGFLEDIES----------IISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK 207

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI----- 520
               E++++  + + E +K +    ++ + ++     V  R     +  T  + I     
Sbjct: 208 ELTTELVDQYYIRVKENEK-FDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRA 266

Query: 521 --IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +H+
Sbjct: 267 EGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 326

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + GR GR  +    I    P    N    L +++N
Sbjct: 327 I-GRTGRAGKSGQSITFVAP----NEMGYLQIIEN 356


>gi|325568403|ref|ZP_08144770.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
           12755]
 gi|325158172|gb|EGC70325.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
           12755]
          Length = 508

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 140/337 (41%), Gaps = 42/337 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + M   ++      Q +++AP   LA Q  E + +  ++ +I V+
Sbjct: 42  IGQAQTGTGKTAAFGLPMLEKIDPANHQLQGLVIAPTRELAIQTQEELYRLGKDKKIRVQ 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHR 405
            + G      + + L+     + HI++GT     D I  + L L  V        DE   
Sbjct: 102 AVYGGADIGRQIRQLK----DRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLN 157

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  + ++  ++Q       LL +AT  P      ++ +I + K  ++P   + IK   +
Sbjct: 158 MGFLEDIEKIISQVPDVRQTLLFSATMPP------AIKNIGV-KFMKEPEHVQ-IKAKEM 209

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--- 520
             + ID+       V S+  + + +  ++ + +      V  R     +     +     
Sbjct: 210 TADLIDQY-----YVRSKDYEKFDVMTRLLDVQSPELTIVFGRTKRRVDELARGLEARGY 264

Query: 521 ----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG +S   + SV+ SFK+G   +L+AT V   G+D+   + +   +      + +
Sbjct: 265 KAEGIHGDLSQQKRMSVLRSFKSGQLDILVATDVAARGLDISGVTHVYNYDIPQDPESYV 324

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           H++ GR GR  +    +    P    N  + L V++N
Sbjct: 325 HRI-GRTGRAGKGGMSVTFVTP----NEMSYLHVIEN 356


>gi|319955548|ref|YP_004166815.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319424208|gb|ADV51317.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 446

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 159/371 (42%), Gaps = 61/371 (16%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGD 301
           M K F K +G+      ++ QK L ++  + PT  Q   +K I   ++ K  ++ + +  
Sbjct: 1   MSKHFSK-LGV-----NEVFQKSLADLEITTPTDIQ---VKTIPLVLTAKKDIVALAK-- 49

Query: 302 VGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITG 357
            G+GKT    + L+ +        Q VI+AP   L QQ Y  +  + + +  I++  I G
Sbjct: 50  TGTGKTAAFGLPLLQLVNTKNNDIQVVILAPTRELGQQIYANLVSFAKYSPAIVIASICG 109

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--GVQQ 410
             P    +  +E++     H+++ T     D IQ   + +     +++DE       ++Q
Sbjct: 110 GTP---IKPQIEKLKSA-THVVVATPGRLVDLIQQKAINIKNTSYLVLDEADEMVTALKQ 165

Query: 411 RLK--LTQKATAPHVLLMTATPIP---RTLVLTSLG------DIDISKITEKPAGRKPIK 459
            L   + +       LL TAT +P   + LV   L       + D+  I  +    + I 
Sbjct: 166 DLDPIVKELPEERRTLLFTAT-MPGAIKQLVQNYLNKNVMHLEADMDTIGHQGIEHQYI- 223

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            V+ PI ++D ++  L     EG++    C       +      + +F+S          
Sbjct: 224 -VVEPIEKLDVLLHFLSS--REGEQGIIFCKTKAAVNKLAKNLAINKFSS---------G 271

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG ++ + ++ VM  F+ G  K+L+AT +   GIDV D S ++     ++ L + + L
Sbjct: 272 ALHGSLTQVIRDRVMGQFREGQLKILVATDLASRGIDVKDISYVV-----NYHLPETYDL 326

Query: 580 ----RGRVGRG 586
                GR  R 
Sbjct: 327 YVHRSGRTARA 337


>gi|313896350|ref|ZP_07829903.1| primosomal protein N' [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975149|gb|EFR40611.1| primosomal protein N' [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 805

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 17/236 (7%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G  A+   R +P   T +Q  A   + + ++       +L G  GSGKT V  I  A AV
Sbjct: 262 GTQAETAQREVPL--TAAQAHAADTLREGVAAGIYRGYLLHGVTGSGKTRV-YIETARAV 318

Query: 319 EAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
            A G Q V++ P   L  Q    I  + +     + ++   +  A R  A+ R+  G+A 
Sbjct: 319 RARGRQVVVLVPEIALTGQ---LITAFQEIFAGDIVVMHSRLSLAERNDAIFRVRCGEAG 375

Query: 378 IIIGTH-ALFQDSIQYYKLIL-------VIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           IIIG   ALF  +     +IL          DE  R+  +   ++  +      LL +AT
Sbjct: 376 IIIGARSALFVPADNIGCIILDEEQDMSYKQDESPRYHARTVAEILARRFGAIFLLGSAT 435

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           P   T      G++ +  + E+  GR+P+  V   ++  +E+    + ++SE  +A
Sbjct: 436 PALETYARAHTGELTLLTMPER-IGRQPLPRVRT-VDMREELRRGRRTIISEALRA 489


>gi|312871655|ref|ZP_07731747.1| primosomal protein N' [Lactobacillus iners LEAF 3008A-a]
 gi|311092880|gb|EFQ51232.1| primosomal protein N' [Lactobacillus iners LEAF 3008A-a]
          Length = 796

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q++A+  I Q + +KN    +L+G  GSGKT V L A+A  ++    A+++ P I +  Q
Sbjct: 264 QQAALDQINQQIVRKNAKTFLLEGITGSGKTEVYLHAIAECLKNNKSALMLVPEIALTPQ 323

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
              +   ++ ++    V ++   + +  +     RI + + H+++G   A+F        
Sbjct: 324 MVNQVKSRFGKD----VAVLHSALSEGEKYDEWCRIRNQETHVVVGARSAIFAPLTN--- 376

Query: 395 LILVIVDEQHRFGVQQ 410
           + L+I+DE+H    +Q
Sbjct: 377 IGLIIIDEEHEASYKQ 392


>gi|296387524|ref|ZP_06876999.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 449

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 135/350 (38%), Gaps = 51/350 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT-------LVALIAMAAAVEAGG-Q 323
           +PT  Q  AI   L     K R L +     G+GKT       L  L      V A   +
Sbjct: 23  TPTPIQAQAIPPAL-----KGRDL-LAAAQTGTGKTAGFALPLLQRLTLEGPQVAANSVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHII 379
           A+++ P   LA+Q +  I+ Y Q+  +   +  G +   PQ  + RK           I+
Sbjct: 77  ALVLVPTRELAEQVHASIRDYGQHLPLRTAVAYGGVSINPQMMKLRKG--------GDIL 128

Query: 380 IGTHALF-----QDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAPHVLLMTATPI 431
           + T         Q+++++ +L  +++DE  R    G  + L            L  A P 
Sbjct: 129 VATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDE----------LFAALPR 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  +   +   R P+   + P N   + + +  V + + +KA   C  
Sbjct: 179 KRQTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHL 238

Query: 492 IEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++  +       +  R  VE    L +    +   IHG      +   +  FK G   LL
Sbjct: 239 LQTNRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +AT V   G+D+ +  +++  +        +H++ GR GR       + L
Sbjct: 299 VATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRI-GRTGRAGASGQAVSL 347


>gi|295702531|ref|YP_003595606.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294800190|gb|ADF37256.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 401

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 146/343 (42%), Gaps = 45/343 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT  Q  AI +IL +         I +   G+GKTL  L+ +   ++ G    QAVI+A 
Sbjct: 24  PTAIQTKAISEILANKDV------IGESPTGTGKTLAYLLPVLHRIQPGPSHIQAVILAS 77

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q +  I+ ++Q + I      G    A+ ++ LE++   + +II+GT     + 
Sbjct: 78  SHELVMQIHGEIQTWSQGSGISSAAFIGG---ANMKRQLEKLKK-RPNIIVGTPGRLNEL 133

Query: 390 IQYYKLIL-----VIVDE-------QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+  KL +     +++DE       +H   VQQ +K+    +   +L+ +AT   RT  L
Sbjct: 134 IKMKKLKMHEVKTIVIDEADQLFVPEHVQTVQQIVKMA--LSDRQILVFSATVSERTKSL 191

Query: 438 TSLG-----DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
                    +I++ +  E PA +  ++ V I     D+V    K+V  E  KA      I
Sbjct: 192 AKDMMNHPLEIEVGR-DELPASK--VEHVYIKSEARDKVDVLRKLVRQEQMKALAFFKGI 248

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +   E   +   +R  +           +H      D+ + +  F+ G   +L+AT V  
Sbjct: 249 DTLIEFEEKLTFKRVEA---------GSLHSETKKEDRATTIKGFRKGDFPVLLATDVAA 299

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            G+D+   + +I  +        +H+  GR GR     + I L
Sbjct: 300 RGLDIKGLTHVIHIDVPQDADQYVHR-SGRTGRSGAEGTVISL 341


>gi|302345341|ref|YP_003813694.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149991|gb|ADK96253.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 573

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 150/348 (43%), Gaps = 46/348 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL+       +L + Q   G+GKT   L+ + + +  GG        VIM
Sbjct: 25  TPVQEKCIPEILKGHD----VLGVAQ--TGTGKTAAYLLPVLSKLADGGYPESAINCVIM 78

Query: 328 APIGILAQQHYEFIK--KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +P   LAQQ  + ++   Y  +    V +  GN    + ++ L+ +A G A ++I T   
Sbjct: 79  SPTRELAQQIDQGMQGFAYYLDGVSCVAVYGGNDGNRYDQE-LKSLALG-ADVVIATPGR 136

Query: 386 F-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           F       ++   K+   I+DE  R        +     A  ++ + A  +P T      
Sbjct: 137 FISHISLGNVDLSKVSFFILDEADR--------MLDMGFADDIMTI-AKKLPATCQTIMF 187

Query: 441 GDIDISKITE--KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                +KI E  K   + P++ + + +++  E I++   V  E +K   I       K  
Sbjct: 188 SATMPAKIEELAKTLLKNPVE-IKLAVSKPAEKIQQTAYVCYETQKMGIIKDIF---KAG 243

Query: 499 NFRSVVERFNSLHE--HFTSSIAIIH---GRM-SDIDKE---SVMDSFKNGTCKLLIATT 549
           + + V+    S  +      S+  +H   G M SD+D+E    VM  FK+G   +L+AT 
Sbjct: 244 DLKRVIIFSGSKQKVKQIAGSLNRMHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++  GID+ D +++I  +  H     +H++ GR  R +     I   +
Sbjct: 304 IVSRGIDIDDIAMVINYDVPHDAEDYVHRI-GRTARADRDGKAITFVN 350


>gi|225852990|ref|YP_002733223.1| excinuclease ABC subunit B [Brucella melitensis ATCC 23457]
 gi|256263530|ref|ZP_05466062.1| excinuclease ABC subunit B [Brucella melitensis bv. 2 str. 63/9]
 gi|225641355|gb|ACO01269.1| excinuclease ABC, B subunit [Brucella melitensis ATCC 23457]
 gi|263093558|gb|EEZ17583.1| excinuclease ABC subunit B [Brucella melitensis bv. 2 str. 63/9]
 gi|326409529|gb|ADZ66594.1| excinuclease ABC subunit B [Brucella melitensis M28]
 gi|326539237|gb|ADZ87452.1| excinuclease ABC, B subunit [Brucella melitensis M5-90]
          Length = 940

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 146 KSEGGIPIRME----------TSFEPSGDQPTAIRDLVEGLENQDRT-QVLLGVTGSGKT 194

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                 MA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 195 FT----MAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 234


>gi|167585895|ref|ZP_02378283.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
          Length = 487

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 123/299 (41%), Gaps = 47/299 (15%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQ-AHRRKALERIAHGQAHI 378
           +A+I+ P   LA Q    +  Y ++T +   ++ G +   PQ A  R+ +E        I
Sbjct: 89  RALILTPTRELADQVAANVHAYGKHTPLRSAVVFGGVDMNPQMAELRRGVE--------I 140

Query: 379 IIGTHALFQDSIQYY-----KLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLM 426
           +I T     D +Q       ++ ++++DE  R         +Q+ L L  K      LL 
Sbjct: 141 LIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKER--QTLLF 198

Query: 427 TATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-K 483
           +AT  P  + L  T L +    ++    +    +  ++  +   D+    ++++ S G K
Sbjct: 199 SATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRSRGLK 258

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +    C         N +    R     E      + IHG  + I++   +D+FK G  +
Sbjct: 259 QVIVFC---------NSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIE 309

Query: 544 LLIATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            L+AT V   G+D+ +   +I      NAE +    +H++ GR GR       + L  P
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDY----VHRI-GRTGRAGATGDALSLCSP 363


>gi|145628549|ref|ZP_01784349.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|145639856|ref|ZP_01795457.1| preprotein translocase subunit SecF [Haemophilus influenzae PittII]
 gi|144979019|gb|EDJ88705.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|145271074|gb|EDK10990.1| preprotein translocase subunit SecF [Haemophilus influenzae PittII]
          Length = 613

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 143/356 (40%), Gaps = 61/356 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           +P+  Q+S I  +L      N +L + Q   GSGKT    + L+A     E   Q ++MA
Sbjct: 27  TPSPIQQSCIPHLLS----GNDVLGMAQ--TGSGKTAAFALPLLAQIDPSEKHPQMLVMA 80

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q     E   KY Q T+I+   + G      + +AL++     A +++GT   
Sbjct: 81  PTRELAIQVADACELFVKYAQGTRIVT--LYGGQRYDIQLRALKQ----GAQVVVGTPGR 134

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP---HVLLMTAT-PIP- 432
             D I+   L        +L   DE  R G    ++ T  A  P      L +AT P P 
Sbjct: 135 ILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVE-TVMAELPENHQTALFSATMPEPI 193

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL--------KVVLSEG 482
           R +    + D    KI         I      ++  R +E + R          ++ +  
Sbjct: 194 RRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIFART 253

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           K       ++ EK  + FRS                A ++G M+   +E  +D  +NG+ 
Sbjct: 254 KTGTLDITELLEK--NGFRS----------------AALNGDMTQQLREQTLDRLRNGSL 295

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +++AT V   GID+   S+++  +      + +H++ GR GR       +L   P
Sbjct: 296 DIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEP 350


>gi|125559398|gb|EAZ04934.1| hypothetical protein OsI_27114 [Oryza sativa Indica Group]
          Length = 540

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 135/313 (43%), Gaps = 41/313 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            GSGKTL  L  +   ++ G     +AVI+ P   LA Q     KK  +  +  ++++T 
Sbjct: 192 TGSGKTLAFLFPILMKIKPGSKEGVKAVILCPTRELAAQTTRECKKLAKGRKFYIKLMTK 251

Query: 358 NMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHR---FGVQ 409
           ++ ++   K +         I++ T     HA+ +  +   ++  +++DE  +    G  
Sbjct: 252 DLSKSGNFKDM------HCDILVSTPLRLDHAVQKRDLDLSRVEYLVLDESDKLFELGFV 305

Query: 410 QRLKLTQKATA-PHVL--LMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           + +    KA + P ++  L +AT +P    TL  T + D  +  I     GRK   + +I
Sbjct: 306 EVIDSVVKACSNPSIIRSLFSAT-LPDSIETLARTIMHDA-VRVIV----GRKNSASSLI 359

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAI 520
               I    E+ K++      A  + P +       F    ER   L++          +
Sbjct: 360 KQKLIFAGTEKGKLLALRQSFAESLNPPV-----LIFVQSKERAKELYKELAFDDVRADV 414

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL- 579
           IH  + +  ++  +D+ + G   +LIAT VI  G+D    + +I  +      A +H++ 
Sbjct: 415 IHADLDEEQRQDAVDNLRAGQTWVLIATEVIARGMDFKGVNCVINYDFPESASAYIHRIG 474

Query: 580 -RGRVGR-GEEIS 590
             GR GR GE I+
Sbjct: 475 RSGRAGRSGEAIT 487


>gi|119470419|ref|ZP_01613147.1| Primosome factor Y, also called protein n'; ATP-dependent DNA
           helicase activity required for recA-dependent stable DNA
           [Alteromonadales bacterium TW-7]
 gi|119446344|gb|EAW27620.1| Primosome factor Y, also called protein n'; ATP-dependent DNA
           helicase activity required for recA-dependent stable DNA
           [Alteromonadales bacterium TW-7]
          Length = 728

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 23/177 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           PT ++E A+     + S+      +L+G  GSGKT V L  +   ++ G QA+++ P IG
Sbjct: 197 PTLNKEQAVACTAINQSKGFNTF-LLEGVTGSGKTEVYLQCLEEVLKRGEQALVLVPEIG 255

Query: 332 ILAQQHYEFIKKYTQNTQIIV--EIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQD 388
           +  Q    F +++  +T I++    +T N     R +       G   I+IGT  ++F  
Sbjct: 256 LTPQTVNRFRRRFP-DTPIMLWHSALTDN----ERLQTWRFCEKGSCAIVIGTRSSIF-- 308

Query: 389 SIQYYKLILVIVDEQH--RFGVQQRLKLTQKATAPH--------VLLMTATPIPRTL 435
            + + KL +++VDE+H   F  Q  L+   +  A +        ++L +ATP   TL
Sbjct: 309 -LPFLKLGMIVVDEEHDSSFKQQDTLRYHARDLAAYRAFQHKIPLILGSATPALETL 364


>gi|47937760|gb|AAH72323.1| Ddx49-A-prov protein [Xenopus laevis]
          Length = 429

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 132/337 (39%), Gaps = 38/337 (11%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKTLVALIAMAAAVEA---GGQAV 325
             P+  QE+ I  IL+         R   G    GSGKT   ++ +   +     G   +
Sbjct: 29  LKPSPVQENCIPPILEG--------RDCMGCAKTGSGKTAAFVLPILQKLSEDPFGIFCL 80

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E  +   +   +   II G M    +   L R    + HI+I T   
Sbjct: 81  VLTPTRELAYQIAEQFRVLGKPLGLKDCIIIGGMDMVAQALELSR----KPHIVIATPGR 136

Query: 386 FQDSIQYY------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
             D I+        K+  +++DE  R   Q     TQ       +++ A P  R  +L S
Sbjct: 137 LADHIRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTQDLQ----VILEAVPAQRQTLLFS 192

Query: 440 LGDIDISKITEKPAGRKPI-KTVIIPINRIDEVIERLKVVLSEGKKAY--WICPQIEEKK 496
               D  +  +  A  KP        +  ++++ +R  +V  + K AY  ++  + +++ 
Sbjct: 193 ATLTDTLQELKTVAMNKPFFWESTSEVRTVEQLDQRYILVPEKVKDAYLVYLIQKFQDEH 252

Query: 497 E-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           E       +N     +  N +   F+     +H  M    + + +  FK+   K+LIAT 
Sbjct: 253 EDWSIMIFTNTCKTCQILNMMLREFSFPSVALHSMMKQKQRFAALAKFKSSVFKILIATD 312

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           V   G+D+    ++I  N        +H++ GR  R 
Sbjct: 313 VAARGLDIPTVQVVINHNTPGLPKIYIHRV-GRTARA 348


>gi|81428303|ref|YP_395303.1| primosomal replication protein N (factor Y) [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78609945|emb|CAI54992.1| Primosomal replication protein N (factor Y) [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 805

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 67/137 (48%), Gaps = 5/137 (3%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  QE+A+  ++Q  S     + +++G  GSGKT V L  + A ++ G  A+++ P   L
Sbjct: 270 TSEQETAVDAVVQSASTDASEVFLIEGVTGSGKTEVYLQTIDAVLQQGKTALMLVPEIAL 329

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             Q  + +K    +   +V ++   + +  +     RI   +A +++G  +     ++  
Sbjct: 330 TPQMVQRVKGRFGD---LVAVLHSGLSEGEKYDEWRRIERKEARVVVGARSAVFAPLE-- 384

Query: 394 KLILVIVDEQHRFGVQQ 410
            + ++I+DE+H    +Q
Sbjct: 385 DIGVIIMDEEHEASYKQ 401


>gi|327489488|gb|EGF21281.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058]
          Length = 523

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 135/337 (40%), Gaps = 42/337 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT          ++      QA+I+AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I        Q   LIL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLN 157

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  + ++  +++       LL +AT +P      ++  I I  + E      P    I 
Sbjct: 158 MGFLEDIESIISRVPEERQTLLFSAT-MP-----DAIKRIGIKFMKE------PEHVKIA 205

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--- 520
                 E++++  + + E +K +    ++ + ++     V  R     +  T  + I   
Sbjct: 206 AKELTTELVDQYYIRVKENEK-FDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGF 264

Query: 521 ----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +
Sbjct: 265 RAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYV 324

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           H++ GR GR  +    I    P    N    L +++N
Sbjct: 325 HRI-GRTGRAGKSGQSITFVAP----NEMGYLQIIEN 356


>gi|325686939|gb|EGD28963.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK72]
          Length = 447

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 151/357 (42%), Gaps = 42/357 (11%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAV 318
           Q+ LR++ F   T  QE  I  +L       R L + +   GSGKT   L+ +  M    
Sbjct: 13  QEALRDLNFVEATPVQEKLIPVVLS-----GRDL-VGESKTGSGKTHTFLLPIFQMLDEE 66

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN-MPQAHRRKALERIAHGQAH 377
               QAVI AP   LA Q Y+  ++    ++   EI   N +    + + + ++   Q H
Sbjct: 67  ADTVQAVITAPSRELAAQIYQAARQLASFSE--KEIRMANYIGGTDKARQIGKLESSQPH 124

Query: 378 IIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I+IGT     D ++   L +      +VDE         L +   AT   +    A  +P
Sbjct: 125 IVIGTPGRIYDLVESGDLAIHKAKTFVVDE-----ADMTLDMGFLATVDKI----AGRLP 175

Query: 433 RTLVLTSLGDIDISKITEKPAGRK----PIKTVIIPINRIDEVIERLKVVLSEGK----K 484
           + L           K+  +P  +K    P+   I     I + IE   ++ ++G+    +
Sbjct: 176 KDLQFLVFSATIPQKL--QPFLKKYLSNPVIEQIKTKTVIADTIENW-LLSTKGRDKNAQ 232

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGT 541
            Y I   ++      F +   R + LH + T+    +A IHG ++  +++ +M+  KN  
Sbjct: 233 IYQISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLD 292

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            + ++AT +   GID+   S +I +         +H++ GR GR     + I LY P
Sbjct: 293 FEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRV-GRTGRNGLPGTAITLYQP 348


>gi|315282345|ref|ZP_07870774.1| probable ATP-dependent RNA helicase YqfR [Listeria marthii FSL
           S4-120]
 gi|313614006|gb|EFR87721.1| probable ATP-dependent RNA helicase YqfR [Listeria marthii FSL
           S4-120]
          Length = 435

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 149/346 (43%), Gaps = 38/346 (10%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAVEAGGQAVIM 327
           + PT+ Q+  I  IL+  S       I Q   G+GKT   ++ +I      +   QAVI 
Sbjct: 26  YEPTEVQQKLIPGILKGESI------IGQSQTGTGKTHTFILPIINNVNPEKDAVQAVIT 79

Query: 328 APIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           AP   LA Q Y  I+K T+ ++  I V+++ G      +++A++++   Q  II+GT   
Sbjct: 80  APSRELATQIYNEIRKVTKYSEKEIAVQLVIGG---TDKQRAIDKLKK-QPQIIVGTPGR 135

Query: 386 FQDSIQYYKLIL-----VIVDEQH---RFGVQQRLK-LTQKATAPHVLLMTATPIPRTL- 435
             D I+   L +     +++DE       G    +  +  K  A   +L+ +  IP+ L 
Sbjct: 136 INDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSATIPQKLK 195

Query: 436 --VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
             +   + +     I  K A  K ++  I+   R    I+ LK VL  G + Y       
Sbjct: 196 PFLSKYMENPRYEHIQPKVAASKTVEHRIMA-TRSRNKIDLLKNVLV-GSQPYLAIVFTN 253

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            K  ++     E  N L E     +A IHG ++  +++  M   +N   + ++AT +   
Sbjct: 254 TKTTAD-----EVANGLVERGLK-VAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILLYHP 598
           GID+   S ++  N E       +  R GR GR       + L+ P
Sbjct: 308 GIDIQGISHVV--NYELPDDLDFYIHRTGRTGRAGHSGIALTLFEP 351


>gi|304415003|ref|ZP_07395797.1| ATP-dependent RNA helicase specific for 23S rRNA [Candidatus
           Regiella insecticola LSR1]
 gi|304283089|gb|EFL91508.1| ATP-dependent RNA helicase specific for 23S rRNA [Candidatus
           Regiella insecticola LSR1]
          Length = 464

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 136/318 (42%), Gaps = 33/318 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQ---HYEFIKKYTQNTQIIV 352
           Q   GSGKT    + L+   A  +   QA+I+ P   LA Q       + ++TQN +I+ 
Sbjct: 48  QAKTGSGKTAAFGIGLLDKIAVEQFVTQALILCPTRELADQISKELRRLARFTQNIKILT 107

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G      +   L  + H   H ++GT    Q+ ++ + L+L     +++DE  R  
Sbjct: 108 --LCGGQSIGCQ---LYSLVHA-PHFVVGTPGRIQEHLRKHTLVLTNLKVLVLDEADRM- 160

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               L +       +++   A    +TL+ ++     I +I+ +    +P+  V+ P  +
Sbjct: 161 ----LDMGFNDAIDNIIDY-APKTRQTLLFSATYPDSIEQISNR-IQHQPLSVVVSP-QK 213

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAII 521
            +  IE+L    +  K+   +   ++  +        N +   +R     +    S+  +
Sbjct: 214 NETAIEQLFYESTNEKRLPLLIKILKHYQPDSCLVFCNTKLDCQRLYQALKSCQMSVLAL 273

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG +   +++ V   F N +C++L+AT V   G+D+   ++++           +H++ G
Sbjct: 274 HGDLDQHERDQVWVRFANHSCRILVATDVAARGLDIKQLALVVNFEVAFDPEVYIHRI-G 332

Query: 582 RVGRGEEISSCILLYHPP 599
           R GR   I  C +    P
Sbjct: 333 RTGRA-GIGGCAVTLCTP 349


>gi|303228490|ref|ZP_07315321.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516848|gb|EFL58759.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 523

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 143/343 (41%), Gaps = 43/343 (12%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           + L ++ F  PT  Q+ AI      MS K+    I Q   G+GKT    + +   V+   
Sbjct: 16  RALNDMGFEEPTPIQQEAIPVA---MSGKDM---IGQAQTGTGKTAAFGLPVLERVDGSN 69

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q VI++P   LA Q  E + K  Q T I    I G      + +AL++       II
Sbjct: 70  RHVQVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKK----NPQII 125

Query: 380 IGTHALFQD-----SIQYYKLILVIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATP 430
           + T     D     SI++  + +V++DE         V    K+       H  L+ +  
Sbjct: 126 VATPGRLMDHMDRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLFSAT 185

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC- 489
           +P+     ++ ++  + +TE      P    + P     ++IE+  + + + +K   +C 
Sbjct: 186 MPK-----AIRELAETYLTE------PTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCR 234

Query: 490 ------PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
                 P++        R V E   +L +    +  I HG +S   ++SV+  F+ GT  
Sbjct: 235 LFDLQAPELAIIFTRTKRRVDEVTEALKKRGYMAEGI-HGDLSQQKRDSVIRQFREGTID 293

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           +L+AT V   G+D+   S +   +      +  H++ GR GR 
Sbjct: 294 ILVATDVAARGLDISGVSHVYNYDLPQDPESYTHRV-GRTGRA 335


>gi|291404256|ref|XP_002718616.1| PREDICTED: nucleolar protein GU2-like [Oryctolagus cuniculus]
          Length = 780

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 132/338 (39%), Gaps = 59/338 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---------GQAVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++            Q +++AP   LA Q  +     T+ 
Sbjct: 225 IAQARTGTGKTFSFAIPLIEKLQGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITK- 283

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P  ++   +ER+ +G   I++GT    +D ++  KL L     V++DE
Sbjct: 284 -KLAVACFYGGTPYGNQ---IERMRNG-IDILVGTPGRIKDHLENGKLDLSKLKHVVLDE 338

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTATP------IPRTLVLTSLGDIDIS 446
             +         V+  LK+  K  +   P  LL +AT       + +  +  +   +D+ 
Sbjct: 339 VDQMLDMGFADQVEDILKVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKATYEQVDL- 397

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-- 504
                  G+K  KT I         +E L +     ++A  I   I        R++V  
Sbjct: 398 ------IGKKTQKTAI--------TVEHLAIKCHWSQRAAVIGDVIRVYSGHQGRTIVFC 443

Query: 505 -----ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                 +  S +         +HG +    +E  +  F+NG   +L+AT V   G+D+ +
Sbjct: 444 ETKKEAQELSQNSSIKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPE 503

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             +++         + +H+  GR GR      CI  Y 
Sbjct: 504 VDLVVQSCPPKDVESYIHR-SGRTGRAGRTGVCICFYQ 540


>gi|260565267|ref|ZP_05835751.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|260151335|gb|EEW86429.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. 16M]
          Length = 940

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 146 KSEGGIPIRME----------TSFEPSGDQPTAIRDLVEGLENQDRT-QVLLGVTGSGKT 194

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                 MA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 195 FT----MAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 234


>gi|260582883|ref|ZP_05850668.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
 gi|260094096|gb|EEW77999.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
          Length = 613

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 143/356 (40%), Gaps = 61/356 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           +P+  Q+S I  +L      N +L + Q   GSGKT    + L+A     E   Q ++MA
Sbjct: 27  TPSPIQQSCIPHLLS----GNDVLGMAQ--TGSGKTAAFALPLLAQIDPSEKHPQMLVMA 80

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q     E   KY Q T+I+   + G      + +AL++     A +++GT   
Sbjct: 81  PTRELAIQVADACELFVKYAQGTRIVT--LYGGQRYDIQLRALKQ----GAQVVVGTPGR 134

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP---HVLLMTAT-PIP- 432
             D I+   L        +L   DE  R G    ++ T  A  P      L +AT P P 
Sbjct: 135 ILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVE-TVMAELPENHQTALFSATMPEPI 193

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL--------KVVLSEG 482
           R +    + D    KI         I      ++  R +E + R          ++ +  
Sbjct: 194 RRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIFART 253

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           K       ++ EK  + FRS                A ++G M+   +E  +D  +NG+ 
Sbjct: 254 KTGTLDITELLEK--NGFRS----------------AALNGDMTQQLREQTLDRLRNGSL 295

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +++AT V   GID+   S+++  +      + +H++ GR GR       +L   P
Sbjct: 296 DIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEP 350


>gi|256061564|ref|ZP_05451706.1| excinuclease ABC subunit B [Brucella neotomae 5K33]
 gi|261325573|ref|ZP_05964770.1| excinuclease ABC subunit B [Brucella neotomae 5K33]
 gi|261301553|gb|EEY05050.1| excinuclease ABC subunit B [Brucella neotomae 5K33]
          Length = 940

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 146 KSEGGIPIRME----------TSFEPSGDQPTAIRDLVEGLENQDRT-QVLLGVTGSGKT 194

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                 MA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 195 FT----MAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 234


>gi|238852566|ref|ZP_04642976.1| primosomal protein N' [Lactobacillus gasseri 202-4]
 gi|238834712|gb|EEQ26939.1| primosomal protein N' [Lactobacillus gasseri 202-4]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 67/135 (49%), Gaps = 7/135 (5%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q  A+  I + + ++     +L+G  GSGKT V L A++ A+E    A+++ P I +  Q
Sbjct: 266 QTHALNSIGKSIQKREAKTFLLEGITGSGKTEVYLHAISIALEQKRNALMLVPEISLTPQ 325

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
              +  +++  N    V ++   + +  +     RI  G+A +++G  +     ++   +
Sbjct: 326 MVKQVKERFGDN----VAVLHSGLSEGEKYDEWRRIRRGEAQVVVGARSAIFAPLK--NI 379

Query: 396 ILVIVDEQHRFGVQQ 410
            L+++DE+H    +Q
Sbjct: 380 GLIVIDEEHESSYKQ 394


>gi|253731082|ref|ZP_04865247.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|297210100|ref|ZP_06926493.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300910462|ref|ZP_07127914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304379262|ref|ZP_07362001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|253725209|gb|EES93938.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|296885300|gb|EFH24240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300888304|gb|EFK83495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304342121|gb|EFM08021.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312437505|gb|ADQ76576.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|320140748|gb|EFW32600.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143723|gb|EFW35500.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 517

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 156/376 (41%), Gaps = 60/376 (15%)

Query: 249 KEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGK 306
           KE+GI  N       + L ++ F  PT  Q+ +I   LQ +        IL Q   G+GK
Sbjct: 16  KELGISDNT-----VQSLESMGFKEPTPIQKDSIPYALQGID-------ILGQAQTGTGK 63

Query: 307 TLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           T    I +   V  + G Q++I+AP   LA Q  E ++++++   + V  + G MP   +
Sbjct: 64  TGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQ 123

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQ 416
            KAL++       I++GT     D +          + LIL   DE    G    ++   
Sbjct: 124 IKALKK----GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIM 179

Query: 417 K---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
               A     +L +AT +P+ +         + +  + P   K IKT+   ++  D  IE
Sbjct: 180 DKIPAVQRQTMLFSAT-MPKAIQAL------VQQFMKSP---KIIKTMNNEMS--DPQIE 227

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-------AIIHGRMS 526
               ++ E +K +       +  +     V  R     +  TS++         +HG ++
Sbjct: 228 EFYTIVKELEK-FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDIT 286

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGR 582
              +  V+  FKN    +L+AT V   G+D+   S +    I ++ E +     H++ GR
Sbjct: 287 QAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY----THRI-GR 341

Query: 583 VGRGEEISSCILLYHP 598
            GR  +    +   +P
Sbjct: 342 TGRAGKEGIAVTFVNP 357


>gi|227551284|ref|ZP_03981333.1| ATP-dependent helicase [Enterococcus faecium TX1330]
 gi|227179564|gb|EEI60536.1| ATP-dependent helicase [Enterococcus faecium TX1330]
          Length = 653

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 98/236 (41%), Gaps = 46/236 (19%)

Query: 386 FQDSIQYYKLILVIVDEQH---RFG-------VQQRLKLTQKATAPHVLLMTATPIPRTL 435
           F  ++  + + ++ +DE H   ++G       +Q   +L Q    P ++ +TAT   +  
Sbjct: 173 FIQAMNRWNVCMIAIDEAHCISQWGHDFRPSYLQMAKQLNQLPNRPVIVALTATATIQVA 232

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER----LKVVLSEGKKAYWICPQ 491
                   DI ++ + P G           N I    ER     +VV  + K+ Y +   
Sbjct: 233 A-------DIKRLLKIPDG-----------NHIQTGFERENLRFQVVKDQKKEQYLVEYL 274

Query: 492 IEEKKESNF-----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              K +S       R  V+R   L + F  SI   HG +++ ++ ++ ++F     +L++
Sbjct: 275 KINKNQSGIIYAATRKEVDRIYHLLKKFGFSIGRYHGGLNENERTAMQEAFLYDRLQLIV 334

Query: 547 ATTVIEVGIDVVDASIIIIENAEHF----GLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT    +GI+  +   +I     H+     L   +Q  GR GR    S  ILL+ P
Sbjct: 335 ATNAFGMGINKSNVRFVI-----HYQIPGSLEAYYQEAGRAGRDGLSSEAILLFAP 385


>gi|189024626|ref|YP_001935394.1| excinuclease ABC subunit B [Brucella abortus S19]
 gi|260546937|ref|ZP_05822676.1| excinuclease ABC subunit B [Brucella abortus NCTC 8038]
 gi|189020198|gb|ACD72920.1| excinuclease ABC subunit B [Brucella abortus S19]
 gi|260095987|gb|EEW79864.1| excinuclease ABC subunit B [Brucella abortus NCTC 8038]
          Length = 940

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 146 KSEGGIPIRME----------TSFEPSGDQPTAIRDLVEGLENQDRT-QVLLGVTGSGKT 194

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                 MA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 195 FT----MAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 234


>gi|134085663|ref|NP_001076996.1| nucleolar RNA helicase 2 [Bos taurus]
 gi|133778115|gb|AAI23649.1| DDX21 protein [Bos taurus]
 gi|296472163|gb|DAA14278.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Bos taurus]
          Length = 784

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 135/339 (39%), Gaps = 61/339 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   +             Q +++AP   LA Q        T+ 
Sbjct: 228 IAQARTGTGKTFSFAIPLVEKLLGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITK- 286

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +   +ER+ +G   I++GT    +D +Q  KL L     V++DE
Sbjct: 287 -KLAVACFYGGTPYGGQ---IERMKNG-IDILVGTPGRIKDHLQNGKLDLTKLKHVVLDE 341

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTATP------IPRTLVLTSLGDIDIS 446
             +         V++ L +  K  +   P  LL +AT       + +  + ++   +D+ 
Sbjct: 342 VDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPYWVFNVAKKYMKSTYEQVDL- 400

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-- 504
                  G+K  KT I         +E L +     ++A  I   I        R+++  
Sbjct: 401 ------IGKKTQKTAI--------TVEHLAIKCHWTQRAAVIGDVIRVYSGFQGRTIIFC 446

Query: 505 ERFNSLHEHFTSSIAI------IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           E      E  + ++A+      +HG +    +E  +  F+NG   +L+AT V   G+D+ 
Sbjct: 447 ETKKEAQE-LSQNVAVRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIP 505

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +  +++  +      + +H+  GR GR      CI  Y 
Sbjct: 506 EVDLVVQSSPPKDVESYIHR-SGRTGRAGRTGVCICFYQ 543


>gi|147920338|ref|YP_685889.1| Hef nuclease [uncultured methanogenic archaeon RC-I]
 gi|110621285|emb|CAJ36563.1| putative type III restriction-modification system, restriction
           subunit [uncultured methanogenic archaeon RC-I]
          Length = 792

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 18/141 (12%)

Query: 303 GSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           G GKT++AL+ +   ++AGG   + ++++P   L +QH  F +K        + + TG+ 
Sbjct: 41  GLGKTIIALLVILNRLQAGGPGAKVLMLSPTKPLVEQHASFFRKAMAIDPEKIVVFTGST 100

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG-----VQ 409
           P   R    ++     A +I+ T  + ++ +   +  L     V+ DE HR       V 
Sbjct: 101 PPEERADLWDK-----ATVIVSTPQVIENDLLCRRFTLEDVTVVVFDEAHRATGNYAYVY 155

Query: 410 QRLKLTQKATAPHVLLMTATP 430
              +  ++A +P VL +TA+P
Sbjct: 156 IAKRYMEQARSPLVLGITASP 176


>gi|50547377|ref|XP_501158.1| YALI0B20922p [Yarrowia lipolytica]
 gi|74660087|sp|Q6CDV4|IF4A_YARLI RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|49647024|emb|CAG83411.1| YALI0B20922p [Yarrowia lipolytica]
          Length = 395

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 122/282 (43%), Gaps = 28/282 (9%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   G+GKT    I+    ++      QA+I+AP   LA Q  + +  + +  +I     
Sbjct: 65  QAQSGTGKTATFSISALQNIDEKIKKPQALIIAPTRELAHQIQKVVLAFGEYMKIECHAC 124

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGT----HALFQDSIQYYKLI-LVIVDEQHRFGVQQ 410
            G    A       R+     H+I+GT    H + +  I    LI + I+DE        
Sbjct: 125 IGGTSVAEDI----RVIQEGVHVIVGTPGRIHDMIERRILKTDLIKMFILDEADEM---- 176

Query: 411 RLKLTQKATAPHVLLMTATP-IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
              L+++   P   + T  P   +T++L++    ++  IT K   R P++ ++       
Sbjct: 177 ---LSREFKDPIYDIFTTLPETTQTVLLSATMPAEVLDITGKFM-RDPVRILVKKDELTL 232

Query: 470 EVIERLKV-VLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAIIH 522
           E I++  + V  E  K   +C   E    S    F +   + + L +  T    +++ +H
Sbjct: 233 EGIKQFYIDVEQESYKFEVLCDLYETINVSQAVIFCNTRRKVDYLTQALTEADFTVSSMH 292

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           G      ++ +M +F+ G+ ++LI T ++  GIDV   S++I
Sbjct: 293 GETEQSQRDVIMKAFRTGSSRILITTDLLARGIDVQQVSLVI 334


>gi|28901323|ref|NP_800978.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28809870|dbj|BAC62811.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|328469261|gb|EGF40207.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329]
          Length = 448

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 148/367 (40%), Gaps = 67/367 (18%)

Query: 302 VGSGKTLVALIAM-------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  ++ M        +      +AVI+AP   LA+Q Y  ++           +
Sbjct: 51  TGSGKTLAFVLPMLHKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYDAAL 110

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---F 406
           I G      + KAL R        I+ T     D +++  L L     +I+DE  R    
Sbjct: 111 ILGGENFNDQVKALRRYPK----FIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDL 166

Query: 407 GVQQRLKLTQKATAPH----VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           G    L+    A A H     L+ +AT     L    + DI  S++   P      K + 
Sbjct: 167 GFAPELRRIHNA-AKHRRRQTLMFSAT-----LDHAEVNDI-ASEMLNAP------KRIA 213

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--------ESNFRSVV---------E 505
           + ++      E  K +  +    +++C  ++ K+        E+ +R V+         E
Sbjct: 214 VGVSN-----EEHKDITQK----FYLCDHLDHKEAILERVLSEAEYRQVIIFTATRDDTE 264

Query: 506 RFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           R  + L+E    ++A+  G ++   + ++M  F+    K+L+ T V   G+D+   + +I
Sbjct: 265 RLTAKLNEKKLKAVAL-SGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIATVTHVI 323

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
             +        +H++ GR GR       I L  P    +S+ R+      +  F +  ED
Sbjct: 324 NFDMPKHTEEYVHRV-GRTGRAGNKGDAISLVGPK-DWDSFKRIETYLQQDLAFSVF-ED 380

Query: 625 LKQRKEG 631
           LK + +G
Sbjct: 381 LKGKFKG 387


>gi|298704856|emb|CBJ28373.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 519

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 137/347 (39%), Gaps = 55/347 (15%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     + A        G   +++AP   LA Q  E   K+ ++++I   
Sbjct: 172 TGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLVVAPTRELAVQIKEECDKFGRSSEIKNT 231

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G +P+  +   L R       I+I T     D ++  K  L     +++DE  R   
Sbjct: 232 CVYGGVPKRIQVNDLNR----GVEIVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLD 287

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT----------SLGDIDISKITEKPA 453
             F  Q R  ++Q       L+ +AT       L           ++G +++       A
Sbjct: 288 MGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQALARDFLHHYYQVTVGSLEL-------A 340

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             K IK +I      ++     K +   G     +   +E KK  +  +   R +     
Sbjct: 341 ANKDIKQIIECTEDFNKYRSLSKHLQQHGHNGK-VLVFVETKKGCDALTRSLRQDGYQAR 399

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAE 569
                  IHG  +  +++ V+  FK G  ++L+AT V   G+DV D  ++I      N E
Sbjct: 400 ------CIHGDKTQEERDYVLKDFKGGNFQVLVATDVAARGLDVKDIQMVINFDFPNNME 453

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
            +    +H++ GR GR       +  +    S+N    + +L  +E+
Sbjct: 454 DY----IHRI-GRCGRAGAKGVAVSFFGSKNSRNGRELIKILTESEN 495


>gi|283471297|emb|CAQ50508.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 506

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 156/376 (41%), Gaps = 60/376 (15%)

Query: 249 KEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGK 306
           KE+GI  N       + L ++ F  PT  Q+ +I   LQ +        IL Q   G+GK
Sbjct: 5   KELGISDNT-----VQSLESMGFKEPTPIQKDSIPYALQGID-------ILGQAQTGTGK 52

Query: 307 TLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           T    I +   V  + G Q++I+AP   LA Q  E ++++++   + V  + G MP   +
Sbjct: 53  TGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQ 112

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQ 416
            KAL++       I++GT     D +          + LIL   DE    G    ++   
Sbjct: 113 IKALKK----GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIM 168

Query: 417 K---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
               A     +L +AT +P+ +         + +  + P   K IKT+   ++  D  IE
Sbjct: 169 DKIPAVQRQTMLFSAT-MPKAIQAL------VQQFMKSP---KIIKTMNNEMS--DPQIE 216

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-------AIIHGRMS 526
               ++ E +K +       +  +     V  R     +  TS++         +HG ++
Sbjct: 217 EFYTIVKELEK-FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDIT 275

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGR 582
              +  V+  FKN    +L+AT V   G+D+   S +    I ++ E +     H++ GR
Sbjct: 276 QAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY----THRI-GR 330

Query: 583 VGRGEEISSCILLYHP 598
            GR  +    +   +P
Sbjct: 331 TGRAGKEGIAVTFVNP 346


>gi|260101422|ref|ZP_05751659.1| DNA replication factor Y [Lactobacillus helveticus DSM 20075]
 gi|260084762|gb|EEW68882.1| DNA replication factor Y [Lactobacillus helveticus DSM 20075]
          Length = 799

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 68/143 (47%), Gaps = 7/143 (4%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +P +    Q++A+  I + + Q      +L+G  GSGKT V L A+  A+  G  A+++ 
Sbjct: 259 VPVTLNDEQQTALNQINKAIDQHKAETFLLEGITGSGKTEVYLHAIGQALAQGRTALMLV 318

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
           P   L  Q  + +K    +    V ++   + +  +     RI  G+  +++G   A+F 
Sbjct: 319 PEISLTPQMVKQVKARFGDK---VAVLHSALSEGEKYDEWRRIRRGEIQVVVGARSAVF- 374

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
             +    + L+++DE+H    +Q
Sbjct: 375 --VPLDNIGLIVIDEEHESSYKQ 395


>gi|256369928|ref|YP_003107439.1| excinuclease ABC subunit B [Brucella microti CCM 4915]
 gi|256000091|gb|ACU48490.1| excinuclease ABC subunit B [Brucella microti CCM 4915]
          Length = 940

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 146 KSEGGIPIRME----------TSFEPSGDQPTAIRDLVEGLENQDRT-QVLLGVTGSGKT 194

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                 MA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 195 FT----MAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 234


>gi|254714731|ref|ZP_05176542.1| excinuclease ABC subunit B [Brucella ceti M644/93/1]
 gi|254717791|ref|ZP_05179602.1| excinuclease ABC subunit B [Brucella ceti M13/05/1]
 gi|261219641|ref|ZP_05933922.1| excinuclease ABC subunit B [Brucella ceti M13/05/1]
 gi|261322529|ref|ZP_05961726.1| excinuclease ABC subunit B [Brucella ceti M644/93/1]
 gi|260924730|gb|EEX91298.1| excinuclease ABC subunit B [Brucella ceti M13/05/1]
 gi|261295219|gb|EEX98715.1| excinuclease ABC subunit B [Brucella ceti M644/93/1]
          Length = 940

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 146 KSEGGIPIRME----------TSFEPSGDQPTAIRDLVEGLENQDRT-QVLLGVTGSGKT 194

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                 MA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 195 FT----MAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 234


>gi|146413260|ref|XP_001482601.1| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 666

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 119/300 (39%), Gaps = 49/300 (16%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A++MAP   L  Q +E  KK++  + +   ++ G      + + L+R       +++ T 
Sbjct: 284 ALVMAPTRELVSQIFEEAKKFSYRSWVRPCVVYGGADIGTQIRNLDR----GCDLLVATP 339

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF-------------------GVQQRLKLTQKAT 419
              +D ++  ++ L     +++DE  R                    GV+ R  L   AT
Sbjct: 340 GRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVESRQTLMFSAT 399

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDIS--KITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            P  + M A    +  +  S+G +  +   IT+K           +     DE    L  
Sbjct: 400 FPRDIQMLARDFLKDYIFLSVGRVGSTSENITQK-----------VLYVEDDEKKSVLLD 448

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           +LS       I     ++   N          L++    + AI HG  S  ++E  + +F
Sbjct: 449 LLSANDNGLTIIFTETKRMADNLADF------LYDQGFPATAI-HGDRSQYEREKALAAF 501

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+GT  +L+AT V   G+D+ + S ++  +        +H++ GR GR   +      ++
Sbjct: 502 KSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRI-GRTGRAGNVGIATAFFN 560


>gi|126698341|ref|YP_001087238.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-66c26]
 gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
           107932]
 gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-63q42]
 gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
           43255]
 gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-76w55]
 gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-97b34]
 gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-37x79]
 gi|260682458|ref|YP_003213743.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260686057|ref|YP_003217190.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-32g58]
 gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile]
 gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 537

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 14/103 (13%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQL 576
           +HG +    ++ VMD F+NGT  +L+AT V   GIDV D   +    + ++ E++    +
Sbjct: 273 LHGDLKQTQRDIVMDKFRNGTIDILVATDVAARGIDVDDVECVFNYDLPQDEEYY----V 328

Query: 577 HQLRGRVGR-GEEISSCILLYHPPLSK----NSYTRLSVLKNT 614
           H++ GR GR G E  S   ++   + K      YT+  ++K+ 
Sbjct: 329 HRI-GRTGRAGREGMSFTFVFGKEMRKMKDIERYTKSKLIKHN 370


>gi|84994972|ref|XP_952208.1| DNA helicase (SGS1 homologue) [Theileria annulata strain Ankara]
 gi|65302369|emb|CAI74476.1| DNA helicase (SGS1 homologue), putative [Theileria annulata]
          Length = 875

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 9/80 (11%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LH 577
           H ++S I + +V + + N   K+++AT    +GID  D   ++     HF +++      
Sbjct: 465 HAQLSTIVRTNVYNDWINDRIKVIVATIAFGMGIDKKDVRFVV-----HFSVSKSIENYF 519

Query: 578 QLRGRVGRGEEISSCILLYH 597
           Q  GR GR ++ S+CIL+Y+
Sbjct: 520 QESGRAGRDQKKSTCILMYN 539


>gi|71065641|ref|YP_264368.1| ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter arcticus
           273-4]
 gi|71038626|gb|AAZ18934.1| possible ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter
           arcticus 273-4]
          Length = 567

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 80/380 (21%), Positives = 149/380 (39%), Gaps = 64/380 (16%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI-- 312
           +N+   I   + R+    PT  Q  AI   LQ      R L +L    GSGKT   +I  
Sbjct: 49  LNIAKPILSALERSGYTHPTPIQAEAIPFALQ-----GRDL-LLSAQTGSGKTAAFVIPV 102

Query: 313 ----AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKA 367
               + A + +   +A+I+ P   LAQQ ++ ++ Y+++ + +  + + G  P   +  A
Sbjct: 103 LDRLSRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQITA 162

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPH 422
           L++       +I+ T     D I   ++ L     +++DE  R        L        
Sbjct: 163 LKK----GVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRM-------LDMGFADDI 211

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
             ++ A PI R  ++        S   + P G+     +     +  E +  +KV  +  
Sbjct: 212 SDILRAAPIDRQTIM-------CSATWDGPVGK-----IAASFTKNPERVS-IKVESAHI 258

Query: 483 KKAYWICPQIEEKKE-----------------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  + C   + K                   +  +   E+     +      + +HG +
Sbjct: 259 EEKVYYCDDFDHKNRLLDKIVCHKDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDL 318

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
               +  ++   +NG CK+L+AT V   G+DV   S +I  +        +H++ GR GR
Sbjct: 319 PQSKRNRIVQDLRNGKCKILVATDVAARGLDVPALSHVINYDLPRQTEDYVHRI-GRCGR 377

Query: 586 ----GEEISSCILLYHPPLS 601
               G  IS C +   P L+
Sbjct: 378 AGRTGVAISLCSMDDRPQLN 397


>gi|332522704|ref|ZP_08398956.1| primosomal protein N' [Streptococcus porcinus str. Jelinkova 176]
 gi|332313968|gb|EGJ26953.1| primosomal protein N' [Streptococcus porcinus str. Jelinkova 176]
          Length = 794

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 8/135 (5%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q  A+ ++   + Q N+   +L+G  GSGKT V L  +   ++ G  A+++ P I +  Q
Sbjct: 262 QAHAVTEMAAAIGQDNKPF-LLEGITGSGKTEVYLHLIEYVLKLGKTAIVLVPEISLTPQ 320

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
               FI ++ +    +V I+   +    +    ++I +GQA +++G  +     ++   +
Sbjct: 321 MTSRFISRFGK----LVAIMHSGLSDGEKFDEWQKIKNGQAKVVVGARSAIFAPLE--NI 374

Query: 396 ILVIVDEQHRFGVQQ 410
             +I+DE+H    +Q
Sbjct: 375 GAIIIDEEHESSYKQ 389


>gi|319781919|ref|YP_004141395.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167807|gb|ADV11345.1| excinuclease ABC, B subunit [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 1056

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 8/92 (8%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P   EG IA K++    F P   Q +AIKD+++ +   +R  ++L G  GSGKT      
Sbjct: 174 PEKSEGGIAIKMVSE--FEPAGDQPTAIKDLVEGVDNNDRT-QVLLGVTGSGKTFT---- 226

Query: 314 MAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKY 344
           MA  +E   + A+I+AP   LA Q Y   KK+
Sbjct: 227 MAKVIEETQRPALILAPNKTLAAQLYSEFKKF 258


>gi|312867840|ref|ZP_07728045.1| primosomal protein N' [Streptococcus parasanguinis F0405]
 gi|311096595|gb|EFQ54834.1| primosomal protein N' [Streptococcus parasanguinis F0405]
          Length = 802

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 121/275 (44%), Gaps = 34/275 (12%)

Query: 211 NPRKAKDFEWTSPARERLAYDELL---AGQIALLLMRKQFKKEIGIPINVEGKIA---QK 264
           N    K+ + ++ A++RLA  E L    G+  L  + + F +E+      +G +    ++
Sbjct: 188 NQEGLKELQPSARAKKRLALKERLLLEQGEQPLAGLYQDFSREVVAYFIDQGILEITERE 247

Query: 265 ILRNIPFSPTKSQESAI-------KDILQDMSQKNRMLR--ILQGDVGSGKTLVALIAMA 315
           + R   +   K Q  A+       K +   +SQ  +  +  +L+G  GSGKT V L  + 
Sbjct: 248 VNRAAAYYEGKEQTQALLLNSEQAKAVETVVSQIGKTSKPFLLEGVTGSGKTEVYLQIIQ 307

Query: 316 AAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             +  G  A+++ P I +  Q    FI ++ Q     V I+   +    +     ++  G
Sbjct: 308 EVLNKGKTAIMLVPEISLTPQMTDRFISRFGQE----VAILHSGLSNGEKYDQWRKVERG 363

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVL 424
           +A +++G  +     ++   +  +I+DE+H          R+  ++   L  +     +L
Sbjct: 364 EAKVVVGARSAIFAPLK--NIGAIIIDEEHEASYKQDSNPRYHAREVAVLRAQYNQAVLL 421

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEK--PAGRKP 457
           L +ATP   +    + G  ++ ++T++  PA + P
Sbjct: 422 LGSATPSLESRARATKGVYELIRLTQRANPAAKIP 456


>gi|290878256|emb|CBK39315.1| Prp5p [Saccharomyces cerevisiae EC1118]
 gi|323338744|gb|EGA79960.1| Prp5p [Saccharomyces cerevisiae Vin13]
          Length = 849

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 156/396 (39%), Gaps = 78/396 (19%)

Query: 302 VGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQII 351
            GSGKT+  L+ +   V         E G   +I+AP   LA Q +E + K+T+ +T I 
Sbjct: 302 TGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEADTSIR 361

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD--------SIQYYKLILVIVDEQ 403
               TG    +  +K +  +  G   I++ T   F D         +   ++  V++DE 
Sbjct: 362 SVCCTGG---SEMKKQITDLKRG-TEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEA 417

Query: 404 HRF---GVQQRLKLTQKATAP--HVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGR 455
            R    G + ++    K   P    +L +AT  P   R+  +  L               
Sbjct: 418 DRLFDLGFEPQITQIMKTVRPDKQCVLFSAT-FPNKLRSFAVRVL--------------H 462

Query: 456 KPIKTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKE---------SNFRSVVE 505
            PI   I     I+E V ++ ++  SE +K   +   I E+ E             S VE
Sbjct: 463 SPISITINSKGMINENVKQKFRICHSEDEKFDNLVQLIYERSEFFDEVQSENDGQSSDVE 522

Query: 506 RFNSLHEHFTSSIAI-----------------IHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             ++    F SS  I                 IH      ++   ++ FK     +L+ T
Sbjct: 523 EVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKREKNSILLCT 582

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPLSKNSYTR 607
            V+  G++V + S++II NA     AQ     GR  RG    + I LL H  LS  +Y  
Sbjct: 583 EVLSRGLNVPEVSLVIIYNAVK-TFAQYVHTTGRTARGSRSGTAITLLLHDELS-GAYIL 640

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
              +++ E   + A   L+ ++  E+    +SGM K
Sbjct: 641 SKAMRDEE---IKASNSLQAKELQEMSAKFESGMKK 673


>gi|254689697|ref|ZP_05152951.1| excinuclease ABC subunit B [Brucella abortus bv. 6 str. 870]
 gi|260755232|ref|ZP_05867580.1| excinuclease ABC subunit B [Brucella abortus bv. 6 str. 870]
 gi|260675340|gb|EEX62161.1| excinuclease ABC subunit B [Brucella abortus bv. 6 str. 870]
          Length = 940

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 146 KSEGGIPIRME----------TSFEPSGDQPTAIRDLVEGLENQDRT-QVLLGVTGSGKT 194

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                 MA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 195 FT----MAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 234


>gi|229030176|ref|ZP_04186236.1| ATP-dependent RNA helicase [Bacillus cereus AH1271]
 gi|228731134|gb|EEL82056.1| ATP-dependent RNA helicase [Bacillus cereus AH1271]
          Length = 446

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 138/318 (43%), Gaps = 53/318 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+ +   +   +D  ++ +  +    + T+ 
Sbjct: 162 YFGFLYDIEDILDETPDSKQTMLFSAT-MPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIE 220

Query: 463 IPINRIDEVIER-----LKVVLSEGKK--AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
               R+ E  +R     L+ V+   +   A   C           R+ V R + L+++  
Sbjct: 221 ---QRVIETTDRAKPDALRFVMDRDQPFLAVIFC-----------RTKV-RASKLYDNLK 265

Query: 516 S---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENA 568
               + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ 
Sbjct: 266 GLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNFDIPEDV 325

Query: 569 EHFGLAQLHQLRGRVGRG 586
           E +    +H++ GR GR 
Sbjct: 326 ESY----IHRI-GRTGRA 338


>gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-23m63]
 gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
 gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
 gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
 gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
          Length = 537

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 14/103 (13%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQL 576
           +HG +    ++ VMD F+NGT  +L+AT V   GIDV D   +    + ++ E++    +
Sbjct: 273 LHGDLKQTQRDIVMDKFRNGTIDILVATDVAARGIDVDDVECVFNYDLPQDEEYY----V 328

Query: 577 HQLRGRVGR-GEEISSCILLYHPPLSK----NSYTRLSVLKNT 614
           H++ GR GR G E  S   ++   + K      YT+  ++K+ 
Sbjct: 329 HRI-GRTGRAGREGMSFTFVFGKEMRKMKDIERYTKSKLIKHN 370


>gi|225627954|ref|ZP_03785990.1| excinuclease ABC, B subunit [Brucella ceti str. Cudo]
 gi|254694187|ref|ZP_05156015.1| excinuclease ABC subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|254702229|ref|ZP_05164057.1| excinuclease ABC subunit B [Brucella suis bv. 5 str. 513]
 gi|254708177|ref|ZP_05170005.1| excinuclease ABC subunit B [Brucella pinnipedialis M163/99/10]
 gi|254710548|ref|ZP_05172359.1| excinuclease ABC subunit B [Brucella pinnipedialis B2/94]
 gi|256032042|ref|ZP_05445656.1| excinuclease ABC subunit B [Brucella pinnipedialis M292/94/1]
 gi|256114068|ref|ZP_05454838.1| excinuclease ABC subunit B [Brucella melitensis bv. 3 str. Ether]
 gi|256160238|ref|ZP_05457932.1| excinuclease ABC subunit B [Brucella ceti M490/95/1]
 gi|256255444|ref|ZP_05460980.1| excinuclease ABC subunit B [Brucella ceti B1/94]
 gi|260169177|ref|ZP_05755988.1| excinuclease ABC subunit B [Brucella sp. F5/99]
 gi|261214495|ref|ZP_05928776.1| excinuclease ABC subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|261222651|ref|ZP_05936932.1| excinuclease ABC subunit B [Brucella ceti B1/94]
 gi|261315685|ref|ZP_05954882.1| excinuclease ABC subunit B [Brucella pinnipedialis M163/99/10]
 gi|261318123|ref|ZP_05957320.1| excinuclease ABC subunit B [Brucella pinnipedialis B2/94]
 gi|261752803|ref|ZP_05996512.1| excinuclease ABC subunit B [Brucella suis bv. 5 str. 513]
 gi|261758692|ref|ZP_06002401.1| excinuclease ABC subunit B [Brucella sp. F5/99]
 gi|265989153|ref|ZP_06101710.1| excinuclease ABC subunit B [Brucella pinnipedialis M292/94/1]
 gi|265995404|ref|ZP_06107961.1| excinuclease ABC subunit B [Brucella melitensis bv. 3 str. Ether]
 gi|265998615|ref|ZP_06111172.1| excinuclease ABC subunit B [Brucella ceti M490/95/1]
 gi|306843141|ref|ZP_07475761.1| excinuclease ABC, B subunit [Brucella sp. BO2]
 gi|306844513|ref|ZP_07477102.1| excinuclease ABC, B subunit [Brucella sp. BO1]
 gi|225617117|gb|EEH14163.1| excinuclease ABC, B subunit [Brucella ceti str. Cudo]
 gi|260916102|gb|EEX82963.1| excinuclease ABC subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|260921235|gb|EEX87888.1| excinuclease ABC subunit B [Brucella ceti B1/94]
 gi|261297346|gb|EEY00843.1| excinuclease ABC subunit B [Brucella pinnipedialis B2/94]
 gi|261304711|gb|EEY08208.1| excinuclease ABC subunit B [Brucella pinnipedialis M163/99/10]
 gi|261738676|gb|EEY26672.1| excinuclease ABC subunit B [Brucella sp. F5/99]
 gi|261742556|gb|EEY30482.1| excinuclease ABC subunit B [Brucella suis bv. 5 str. 513]
 gi|262553239|gb|EEZ09073.1| excinuclease ABC subunit B [Brucella ceti M490/95/1]
 gi|262766517|gb|EEZ12306.1| excinuclease ABC subunit B [Brucella melitensis bv. 3 str. Ether]
 gi|264661350|gb|EEZ31611.1| excinuclease ABC subunit B [Brucella pinnipedialis M292/94/1]
 gi|306275124|gb|EFM56880.1| excinuclease ABC, B subunit [Brucella sp. BO1]
 gi|306286664|gb|EFM58222.1| excinuclease ABC, B subunit [Brucella sp. BO2]
          Length = 940

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 146 KSEGGIPIRME----------TSFEPSGDQPTAIRDLVEGLENQDRT-QVLLGVTGSGKT 194

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                 MA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 195 FT----MAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 234


>gi|154418331|ref|XP_001582184.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121916417|gb|EAY21198.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 640

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 129/309 (41%), Gaps = 41/309 (13%)

Query: 302 VGSGKTLVALIAMAAAVEA---GGQ----AVIMAPIGILA-QQHYEFIKKYTQNTQIIVE 353
            GSGKTL  +I     V A    GQ    AVI++P   LA Q H E  K ++   +    
Sbjct: 147 TGSGKTLAFIIPCLLHVLAQPPTGQYEAAAVILSPTRELAYQTHIECQKIFSLMDKKSAC 206

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
           ++ GN  +      L  I +G +++II T   F D     +    K+  +++DE  R   
Sbjct: 207 LVGGNDIENQ----LRAIKNG-SNVIIATPGRFIDLLSSSAFNIKKVSYLVIDEADRMFD 261

Query: 406 FGVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            G + Q +++ ++       LM +   P T          + +I  K   +  I+ V+  
Sbjct: 262 LGFEPQVIRIAERMRKDRQTLMFSATFPHT----------VERIARKLL-QNSIEIVVGL 310

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS--- 517
            N +   I +  +V +E  K   +   + +         F +  +R   L      S   
Sbjct: 311 RNVVTPNINQSILVTNEDNKFNSLLKILGDYTTQGQALVFTNTQDRAEDLFGKLNKSGYS 370

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + ++HG M   D+ S++  F+ G   +L+ T+V   GID+     +I  +A       +H
Sbjct: 371 VGLLHGSMDSPDRNSILHDFREGRFSVLVLTSVGARGIDIASIICVINYDAPDHEADYVH 430

Query: 578 QLRGRVGRG 586
           ++ GR GR 
Sbjct: 431 RV-GRTGRA 438


>gi|73969095|ref|XP_860442.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 5 [Canis
           familiaris]
          Length = 630

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 132/341 (38%), Gaps = 55/341 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 132 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 189

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 245

Query: 401 DEQHR-----FGVQQRLKLTQKATAPHVLLMTAT-PIPRTLVLTSLGDIDISKITEKPAG 454
           DE  R     F  Q R  + Q       L+ +AT P          G+I    ++E    
Sbjct: 246 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRHFYIMCGEI----LSE---- 297

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
                   I    +  +I+ ++ +++E           +E K   F     R + L    
Sbjct: 298 -------CIFAGLVFRLIQLMEEIMAE-----------KENKTIIFVETKRRCDDLTRRM 339

Query: 515 TSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                    IHG  S  +++ V++ F++G   +LIAT V   G+DV D   +I  +  + 
Sbjct: 340 RRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNS 399

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
               +H++ GR  R     +    + P   K +   + VL+
Sbjct: 400 SEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 439


>gi|68249329|ref|YP_248441.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 86-028NP]
 gi|229844599|ref|ZP_04464738.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 6P18H1]
 gi|68057528|gb|AAX87781.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 86-028NP]
 gi|229812313|gb|EEP48003.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 6P18H1]
          Length = 619

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 98/241 (40%), Gaps = 50/241 (20%)

Query: 382 THALFQDSIQYYKLILVIVDEQH---RFGVQQRLKLTQ----KATAPH--VLLMTATP-- 430
           T++ FQ  I Y K+  + +DE H   ++G   R + TQ    KA+ P   ++ +TAT   
Sbjct: 131 TNSFFQ-LISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADY 189

Query: 431 -----IPRTLVLTSL----GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                I R L L +L    G  D      +P  R  ++    P+ ++        V+  +
Sbjct: 190 ATQKDILRHLNLKNLHKYIGSFD------RPNIRYTLEEKYKPMEQLTRF-----VLAQK 238

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           GK     C         N R+ VER      +   S A  H  M    +E V   F+   
Sbjct: 239 GKSGIIYC---------NSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDN 289

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYH 597
            ++++AT    +GI+  +   +      HF L +     +Q  GR GR +  +  +L Y 
Sbjct: 290 VQVVVATIAFGMGINKSNVRFV-----AHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344

Query: 598 P 598
           P
Sbjct: 345 P 345


>gi|23502381|ref|NP_698508.1| excinuclease ABC subunit B [Brucella suis 1330]
 gi|23348365|gb|AAN30423.1| excinuclease ABC, B subunit [Brucella suis 1330]
          Length = 940

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 146 KSEGGIPIRME----------TSFEPSGDQPTAIRDLVEGLENQDRT-QVLLGVTGSGKT 194

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                 MA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 195 FT----MAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 234


>gi|49484306|ref|YP_041530.1| helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282904748|ref|ZP_06312622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|282906426|ref|ZP_06314277.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282920258|ref|ZP_06327982.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus C427]
 gi|283958860|ref|ZP_06376305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|295428668|ref|ZP_06821294.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|81650664|sp|Q6GEZ3|Y2168_STAAR RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAR2168
 gi|49242435|emb|CAG41149.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282316118|gb|EFB46499.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus C427]
 gi|282330376|gb|EFB59894.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282594781|gb|EFB99758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|283789578|gb|EFC28401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|295127338|gb|EFG56978.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|315193240|gb|EFU23638.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 506

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 156/376 (41%), Gaps = 60/376 (15%)

Query: 249 KEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGK 306
           KE+GI  N       + L ++ F  PT  Q+ +I   LQ +        IL Q   G+GK
Sbjct: 5   KELGISDNT-----VQSLESMGFKEPTPIQKDSIPYALQGID-------ILGQAQTGTGK 52

Query: 307 TLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           T    I +   V  + G Q++I+AP   LA Q  E ++++++   + V  + G MP   +
Sbjct: 53  TGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQ 112

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQ 416
            KAL++       I++GT     D +          + LIL   DE    G    ++   
Sbjct: 113 IKALKK----GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIM 168

Query: 417 K---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
               A     +L +AT +P+ +         + +  + P   K IKT+   ++  D  IE
Sbjct: 169 DKIPAVQRQTMLFSAT-MPKAIQAL------VQQFMKSP---KIIKTMNNEMS--DPQIE 216

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-------AIIHGRMS 526
               ++ E +K +       +  +     V  R     +  TS++         +HG ++
Sbjct: 217 EFYTIVKELEK-FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDIT 275

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGR 582
              +  V+  FKN    +L+AT V   G+D+   S +    I ++ E +     H++ GR
Sbjct: 276 QAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY----THRI-GR 330

Query: 583 VGRGEEISSCILLYHP 598
            GR  +    +   +P
Sbjct: 331 TGRAGKEGIAVTFVNP 346


>gi|297521633|ref|ZP_06940019.1| ATP-dependent RNA helicase DbpA [Escherichia coli OP50]
          Length = 457

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|262275389|ref|ZP_06053199.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
 gi|262220634|gb|EEY71949.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
          Length = 436

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 130/318 (40%), Gaps = 42/318 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            G+GKT   ++ +   +  GG+       A+I+ P   LA Q +E    Y+++  +   +
Sbjct: 47  TGTGKTAGFVLPILERLSNGGRTRPNHVRALILTPTRELAAQIHENAVVYSRHLPLRSSV 106

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHRFGVQ 409
           + G +    +  AL +       I++ T         Q+++++ +L ++++DE  R    
Sbjct: 107 VFGGVKINPQMMALRK----GTDILVATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDM 162

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
              +  +K       ++   P  R  +L S    D  +   K     P++  + P N   
Sbjct: 163 GFFRDIKK-------ILDLLPKNRQSLLFSATFSDEIRNLAKGLVNNPVEISVTPANSTA 215

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV------------ERFNSLHEHFTSS 517
             +E+      + KK   +   I   K+ +++ V+             RF  L+E   ++
Sbjct: 216 RTVEQCIYPADKKKKPAMLSKLI---KDGDWKQVLVFTRTKHGANKLARF--LNEEGITA 270

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            A IHG  S   +   +  FK G  ++L+AT +   GID+     ++     H     +H
Sbjct: 271 -APIHGNKSQSARTKALADFKTGDVRVLVATDIAARGIDIPQLPQVVNFEIPHVAEDYVH 329

Query: 578 QLRGRVGRGEEISSCILL 595
           ++ GR GR  E    I L
Sbjct: 330 RI-GRTGRAGEPGKAISL 346


>gi|227534877|ref|ZP_03964926.1| primosomal replication protein n [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187633|gb|EEI67700.1| primosomal replication protein n [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 805

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 19/179 (10%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q + + +P +P   Q++ +  I   +++++    +L+G  GSGKT + L  +A  + AG 
Sbjct: 261 QPLTKPLPLTP--EQQTIVTQINAAVAERDPKTFLLEGVTGSGKTEIYLQVIARVLAAGQ 318

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   L  Q    + +        V ++   +    +     RIA G+A +++G 
Sbjct: 319 TALMLVPEIALTPQ---MVNRVKGRFGTHVAVMHSGLSDGEKYDEWRRIARGEAQVVVGA 375

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATP 430
            +     ++   + + I+DE+H    +Q            LK  Q   AP V+L +ATP
Sbjct: 376 RSAAFAPLK--NIGVFIMDEEHETSYKQDSAPRYHARDVLLKRAQIHHAP-VVLGSATP 431


>gi|167391022|ref|XP_001733479.1| ATP-dependent RNA helicase DDX3X [Entamoeba dispar SAW760]
 gi|165896682|gb|EDR24029.1| ATP-dependent RNA helicase DDX3X, putative [Entamoeba dispar
           SAW760]
          Length = 392

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 127/290 (43%), Gaps = 35/290 (12%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   L QQ YE   K+T+NT I    + G    +     ++ +  G   ++  T 
Sbjct: 17  ALILAPTRELGQQIYEEAVKFTENTPIRSVCVYGG---SDAYIQIQEMGKGCDILVATTG 73

Query: 384 ALFQ---------DSIQYYKLILVIVDEQHRFGVQQRLK-LTQKATAPHV----LLMTAT 429
            L            S++Y  LI    D     G + +++ + +    P V     LM + 
Sbjct: 74  RLLYFTEKKIVSLSSVRY--LIFDEADRMLDMGFEPQIREICEDNEMPPVGKRQTLMFSA 131

Query: 430 PIPRTLVLTSLGDID-ISKITEKPAGR--KPIKTVIIPIN---RIDEVIERLKVVLSEGK 483
             P+ +   +   +D    IT   AG   + I+ +I+ +    + + +++ L+    +G+
Sbjct: 132 TFPKQIQRLAADFLDNYVFITVGRAGSTVESIQQIILWVEEQIKQEAILDVLREFAGKGE 191

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           K       +E KK ++        N L++H    +  IHG  S  D++  +  FK    +
Sbjct: 192 KTVIF---VETKKGADMLE-----NYLYDH-GYKVDSIHGDRSQADRDFSLKRFKENVIQ 242

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           LL+AT V   G+D+ D  ++I  +  +   + +H++ GR GR  +  + I
Sbjct: 243 LLVATDVASRGLDIPDIEVVINYDMPNEIESYVHRV-GRTGRAGKKGTAI 291


>gi|154320412|ref|XP_001559522.1| hypothetical protein BC1G_01678 [Botryotinia fuckeliana B05.10]
 gi|150853367|gb|EDN28559.1| hypothetical protein BC1G_01678 [Botryotinia fuckeliana B05.10]
          Length = 719

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 12/108 (11%)

Query: 500 FRSVVERFNSLHEHF----------TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           F   + R  +LH             ++ IA++H  +SD  ++ VM  F+NG   +LI T 
Sbjct: 484 FTQTIPRAIALHAELLYDIPAEAGGSTRIAVLHSDLSDSVRDQVMTRFRNGEIWILITTD 543

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLY 596
           ++  G+D    + ++  +  + G A +H++ GR GR G +    +  Y
Sbjct: 544 ILSRGVDFKGINGVVNYDVPNSGAAYIHRV-GRTGRAGRDGGMAVTFY 590


>gi|55822225|ref|YP_140666.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55738210|gb|AAV61851.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 1031

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 26/151 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           IL  D+G GKTL  +  ++A +E G + ++++P  ++     EF KK+    Q+ V +  
Sbjct: 607 ILADDMGLGKTLQTIAYLSAHLEDGQRVLVLSPSSLIYNWQDEF-KKFA--PQLDVAVSY 663

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK---LILVIVDEQHRFGVQQRLK 413
           G  P     K  E IA     III ++A F+     YK      +I+DE       Q +K
Sbjct: 664 GLKP-----KRDEIIAEDH-QIIITSYASFRQDFDVYKAGQYDYLILDE------AQVMK 711

Query: 414 LTQKATA--------PHVLLMTATPIPRTLV 436
            TQ   A        PH L ++ TPI   L+
Sbjct: 712 NTQTKIAQYLRDFSVPHCLALSGTPIENHLL 742


>gi|62290400|ref|YP_222193.1| excinuclease ABC subunit B [Brucella abortus bv. 1 str. 9-941]
 gi|82700322|ref|YP_414896.1| excinuclease ABC subunit B [Brucella melitensis biovar Abortus
           2308]
 gi|237815904|ref|ZP_04594901.1| excinuclease ABC, B subunit [Brucella abortus str. 2308 A]
 gi|254697840|ref|ZP_05159668.1| excinuclease ABC subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|256257948|ref|ZP_05463484.1| excinuclease ABC subunit B [Brucella abortus bv. 9 str. C68]
 gi|260762278|ref|ZP_05874621.1| excinuclease ABC subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884246|ref|ZP_05895860.1| excinuclease ABC subunit B [Brucella abortus bv. 9 str. C68]
 gi|297248785|ref|ZP_06932503.1| excinuclease ABC subunit B [Brucella abortus bv. 5 str. B3196]
 gi|62196532|gb|AAX74832.1| UvrB, excinuclease ABC, B subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82616423|emb|CAJ11486.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
           motif A (P-loop):UvrB/UvrC protein:Excinuclease ABC, B
           subunit [Brucella melitensis biovar Abortus 2308]
 gi|237789202|gb|EEP63413.1| excinuclease ABC, B subunit [Brucella abortus str. 2308 A]
 gi|260672710|gb|EEX59531.1| excinuclease ABC subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|260873774|gb|EEX80843.1| excinuclease ABC subunit B [Brucella abortus bv. 9 str. C68]
 gi|297175954|gb|EFH35301.1| excinuclease ABC subunit B [Brucella abortus bv. 5 str. B3196]
          Length = 940

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 146 KSEGGIPIRME----------TSFEPSGDQPTAIRDLVEGLENQDRT-QVLLGVTGSGKT 194

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                 MA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 195 FT----MAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 234


>gi|47215263|emb|CAF96990.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 383

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 123/302 (40%), Gaps = 63/302 (20%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I++   +       QA+I+AP   LAQQ  + +        +   
Sbjct: 50  IAQSQSGTGKTATYAISVLQRINTTIKETQAIILAPTRELAQQIQKVVLSLGDYMGVCCH 109

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHRFGV 408
              G       R+ ++ +     HII+GT       L +  I    + ++++DE  R   
Sbjct: 110 ACVGG---TSIRRDIDTMKSTSPHIIVGTPGRVFDMLTRRVISARAIQMLVIDEADRMLG 166

Query: 409 Q----QRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           Q    Q  ++  K  T   ++L++AT     L +T            K   R P K ++ 
Sbjct: 167 QGFKDQIYEIFHKLPTNVQLVLLSATMPAEVLEVT------------KNFMRDPKKILVK 214

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH------------ 511
                    E L +   EG + +++     EK+E    ++ + + +L             
Sbjct: 215 K--------EELTL---EGIRQFYVNT---EKEECKLETLCDLYKTLAITQAVIFVNTRR 260

Query: 512 --EHFTS-------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             E  T        +++++HG M   ++  VM  F++G+ ++LI T ++  GIDV   S+
Sbjct: 261 KAEWLTQRLKSQDFTVSLLHGEMEQNERNLVMKEFRSGSSRVLITTDLLARGIDVQQVSM 320

Query: 563 II 564
           +I
Sbjct: 321 VI 322


>gi|16272194|ref|NP_438403.1| ATP-dependent RNA helicase [Haemophilus influenzae Rd KW20]
 gi|260580884|ref|ZP_05848709.1| ATP-dependent RNA helicase [Haemophilus influenzae RdAW]
 gi|1169261|sp|P44586|DEAD_HAEIN RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|1573195|gb|AAC21900.1| ATP-dependent RNA helicase (deaD) [Haemophilus influenzae Rd KW20]
 gi|260092507|gb|EEW76445.1| ATP-dependent RNA helicase [Haemophilus influenzae RdAW]
          Length = 613

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 143/356 (40%), Gaps = 61/356 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           +P+  Q+S I  +L      N +L + Q   GSGKT    + L+A     E   Q ++MA
Sbjct: 27  TPSPIQQSCIPHLLN----GNDVLGMAQ--TGSGKTAAFALPLLAQIDPSEKHPQMLVMA 80

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q     E   KY Q T+I+   + G      + +AL++     A +++GT   
Sbjct: 81  PTRELAIQVADACELFVKYAQGTRIVT--LYGGQRYDIQLRALKQ----GAQVVVGTPGR 134

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP---HVLLMTAT-PIP- 432
             D I+   L        +L   DE  R G    ++ T  A  P      L +AT P P 
Sbjct: 135 ILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVE-TVMAELPENHQTALFSATMPEPI 193

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL--------KVVLSEG 482
           R +    + D    KI         I      ++  R +E + R          ++ +  
Sbjct: 194 RRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIFART 253

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           K       ++ EK  + FRS                A ++G M+   +E  +D  +NG+ 
Sbjct: 254 KTGTLDITELLEK--NGFRS----------------AALNGDMTQQLREQTLDRLRNGSL 295

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +++AT V   GID+   S+++  +      + +H++ GR GR       +L   P
Sbjct: 296 DIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEP 350


>gi|88802864|ref|ZP_01118391.1| putative ATP-independent RNA helicase [Polaribacter irgensii 23-P]
 gi|88781722|gb|EAR12900.1| putative ATP-independent RNA helicase [Polaribacter irgensii 23-P]
          Length = 436

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 144/338 (42%), Gaps = 49/338 (14%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGIL 333
           QE AI  I ++++       IL    G+GKTL   + +   ++      QA+I+ P   L
Sbjct: 24  QEEAIATIHKNVNT------ILLSPTGTGKTLAFTLPLLDFLDPNIEEIQALILVPSREL 77

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD----- 388
           A Q  + I+      +  V  + G  P +  +  L+ +      I+IGT     D     
Sbjct: 78  AIQIEQVIRSMGSGYK--VNAVYGGRPMSKDKIELKHLPA----ILIGTPGRIADHFANE 131

Query: 389 --SIQYYK-LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT---PIPRTLVLTSL 440
             S  + K LIL   D+    G +  ++  + Q       +L +AT    IP  + L   
Sbjct: 132 RFSTNHIKTLILDEFDKSLEVGFEYEMRGVINQLIALNKRILTSATQGVEIPDFVRLDQP 191

Query: 441 GDIDISKITEKPAGRKPIKTVIIPI-NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             ++  K T     +  IKTV+ P  N+++ ++  L  +   G +   I   +++   +N
Sbjct: 192 NTVNYLKAT---TSKLVIKTVLSPAKNKLNTLLHLLNFL---GNQQGIIFCNLKDSI-NN 244

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             + +E  N  H  F+       G M   D+E  +  F+NGT ++LIAT +   GIDV +
Sbjct: 245 VSAFLESKNIKHGCFS-------GGMEQKDRERSLIKFRNGTNQILIATDLAARGIDVPE 297

Query: 560 ASIIIIENAEHFGLA-QLHQLRGRVGRGEEISSCILLY 596
              II     H+ L  +L +   R GR   +S+    Y
Sbjct: 298 MKYII-----HYELPRELEEFTHRNGRTARVSATGTAY 330


>gi|15925071|ref|NP_372605.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927656|ref|NP_375189.1| hypothetical protein SA1885 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283733|ref|NP_646821.1| hypothetical protein MW2004 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486874|ref|YP_044095.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650754|ref|YP_186888.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161548|ref|YP_494683.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195982|ref|YP_500795.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148268533|ref|YP_001247476.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394597|ref|YP_001317272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151222197|ref|YP_001333019.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156980397|ref|YP_001442656.1| hypothetical protein SAHV_2066 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510293|ref|YP_001575952.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253316240|ref|ZP_04839453.1| putative helicase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006870|ref|ZP_05145471.2| putative helicase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793840|ref|ZP_05642819.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
 gi|258407008|ref|ZP_05680158.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
 gi|258422029|ref|ZP_05684946.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
 gi|258433601|ref|ZP_05688674.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
 gi|258440496|ref|ZP_05690666.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258445704|ref|ZP_05693882.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
 gi|258450158|ref|ZP_05698253.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
 gi|258453208|ref|ZP_05701199.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus A5948]
 gi|258453387|ref|ZP_05701369.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
 gi|262049250|ref|ZP_06022125.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
 gi|262052494|ref|ZP_06024692.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
 gi|269203717|ref|YP_003282986.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282895275|ref|ZP_06303488.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
 gi|282911647|ref|ZP_06319446.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282923070|ref|ZP_06330755.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|282929553|ref|ZP_06336950.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
 gi|284025116|ref|ZP_06379514.1| putative helicase [Staphylococcus aureus subsp. aureus 132]
 gi|294850566|ref|ZP_06791293.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|295407012|ref|ZP_06816814.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
 gi|296275711|ref|ZP_06858218.1| putative helicase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246745|ref|ZP_06930562.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
 gi|81648913|sp|Q6G7M9|Y1985_STAAS RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAS1985
 gi|81694077|sp|Q5HEB9|Y2072_STAAC RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SACOL2072
 gi|81704263|sp|Q7A0D2|Y2004_STAAW RecName: Full=Probable DEAD-box ATP-dependent RNA helicase MW2004
 gi|81705333|sp|Q7A4G0|Y1885_STAAN RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SA1885
 gi|81781186|sp|Q99SH6|Y2081_STAAM RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAV2081
 gi|122538977|sp|Q2FWH5|Y2316_STAA8 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SAOUHSC_02316
 gi|123484971|sp|Q2FF45|Y2037_STAA3 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SAUSA300_2037
 gi|13701876|dbj|BAB43168.1| SA1885 [Staphylococcus aureus subsp. aureus N315]
 gi|14247854|dbj|BAB58243.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21205175|dbj|BAB95869.1| MW2004 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245317|emb|CAG43792.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284940|gb|AAW37034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus COL]
 gi|87127522|gb|ABD22036.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203540|gb|ABD31350.1| ATP-dependent RNA helicase, DEAD box family, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741602|gb|ABQ49900.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149947049|gb|ABR52985.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374997|dbj|BAF68257.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156722532|dbj|BAF78949.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160369102|gb|ABX30073.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257787812|gb|EEV26152.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
 gi|257841341|gb|EEV65785.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
 gi|257841929|gb|EEV66361.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
 gi|257849332|gb|EEV73311.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
 gi|257852565|gb|EEV76483.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257855543|gb|EEV78480.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
 gi|257856632|gb|EEV79538.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
 gi|257859154|gb|EEV82011.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus A5948]
 gi|257864368|gb|EEV87114.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
 gi|259159615|gb|EEW44661.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
 gi|259162615|gb|EEW47182.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
 gi|262076007|gb|ACY11980.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269941681|emb|CBI50088.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
 gi|282324412|gb|EFB54725.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282589032|gb|EFB94136.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
 gi|282593261|gb|EFB98258.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|282762348|gb|EFC02495.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
 gi|285817746|gb|ADC38233.1| Cold-shock DEAD-box protein A [Staphylococcus aureus 04-02981]
 gi|294822586|gb|EFG39028.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|294968037|gb|EFG44064.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
 gi|297176405|gb|EFH35677.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
 gi|312830433|emb|CBX35275.1| DEAD/DEAH box helicase family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315128752|gb|EFT84752.1| putative helicase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315196987|gb|EFU27329.1| putative helicase [Staphylococcus aureus subsp. aureus CGS01]
 gi|323439203|gb|EGA96930.1| ATP-dependent RNA helicase [Staphylococcus aureus O11]
 gi|323442419|gb|EGB00048.1| ATP-dependent RNA helicase [Staphylococcus aureus O46]
 gi|329314766|gb|AEB89179.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329724041|gb|EGG60565.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329726361|gb|EGG62829.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329729332|gb|EGG65740.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 506

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 156/376 (41%), Gaps = 60/376 (15%)

Query: 249 KEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGK 306
           KE+GI  N       + L ++ F  PT  Q+ +I   LQ +        IL Q   G+GK
Sbjct: 5   KELGISDNT-----VQSLESMGFKEPTPIQKDSIPYALQGID-------ILGQAQTGTGK 52

Query: 307 TLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           T    I +   V  + G Q++I+AP   LA Q  E ++++++   + V  + G MP   +
Sbjct: 53  TGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQ 112

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQ 416
            KAL++       I++GT     D +          + LIL   DE    G    ++   
Sbjct: 113 IKALKK----GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIM 168

Query: 417 K---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
               A     +L +AT +P+ +         + +  + P   K IKT+   ++  D  IE
Sbjct: 169 DKIPAVQRQTMLFSAT-MPKAIQAL------VQQFMKSP---KIIKTMNNEMS--DPQIE 216

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-------AIIHGRMS 526
               ++ E +K +       +  +     V  R     +  TS++         +HG ++
Sbjct: 217 EFYTIVKELEK-FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDIT 275

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGR 582
              +  V+  FKN    +L+AT V   G+D+   S +    I ++ E +     H++ GR
Sbjct: 276 QAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY----THRI-GR 330

Query: 583 VGRGEEISSCILLYHP 598
            GR  +    +   +P
Sbjct: 331 TGRAGKEGIAVTFVNP 346


>gi|315653703|ref|ZP_07906623.1| primosome assembly protein PriA [Lactobacillus iners ATCC 55195]
 gi|315489065|gb|EFU78707.1| primosome assembly protein PriA [Lactobacillus iners ATCC 55195]
          Length = 796

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q++A+  I Q + +KN    +L+G  GSGKT V L A+A  ++    A+++ P I +  Q
Sbjct: 264 QQAALDKINQQIVRKNAKTFLLEGITGSGKTEVYLHAIAECLKNNKSALMLVPEIALTPQ 323

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYK 394
              +   ++ ++    V ++   + +  +     RI + + H+++G   A+F        
Sbjct: 324 MVNQVKSRFGKD----VAVLHSALSEGEKYDEWCRIRNQETHVVVGARSAIFAPLTN--- 376

Query: 395 LILVIVDEQHRFGVQQ 410
           + L+I+DE+H    +Q
Sbjct: 377 IGLIIIDEEHEASYKQ 392


>gi|311070440|ref|YP_003975363.1| ATP-dependent RNA helicase [Bacillus atrophaeus 1942]
 gi|310870957|gb|ADP34432.1| ATP-dependent RNA helicase [Bacillus atrophaeus 1942]
          Length = 481

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 143/344 (41%), Gaps = 36/344 (10%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIM 327
            SPT+ Q+  +   L+      +   +++   GSGKT    + +  MA   E   QA+I+
Sbjct: 25  MSPTEVQQKVMPQALE------KKDLVVKSQTGSGKTAAFGIPICEMADWDENKPQALIL 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LA Q  E I    +  ++    + G  P   ++  L++    + HI++GT     
Sbjct: 79  TPTRELAVQVKEDITNIGRFKRMKAAAVFGKSPFDKQKAELKQ----KTHIVVGTPGRVL 134

Query: 388 DSIQ-----YYKLILVIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           D I+       +L  +++DE         ++Q   + +      + ++ +  +P  +   
Sbjct: 135 DHIEKGTFPLERLKYLVIDEADEMLNMGFIEQVEAIIKHLPRDRMTMLFSATLPEDVEQL 194

Query: 439 SLGDI-DISKITEKPAG--RKPIKTVIIPINRIDEVIERLK-VVLSEGKKAYWICPQIEE 494
           S   + +   I  K AG   K I+  +I + R D     LK V+++E   +  I  + +E
Sbjct: 195 SRKYMKNPEHIEIKAAGLTTKHIEHSVIEV-REDHKFSLLKDVLVTENPDSCIIFCRTKE 253

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N   + E  ++L          IHG M   D+  VM+ FK G  + L AT V   G
Sbjct: 254 ----NVDKLSEELDALD----YPCDKIHGGMVQEDRFDVMNEFKRGEFRYLAATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ID+ + + +I  +      + +H+  GR GR       I    P
Sbjct: 306 IDIENITHVINYDLPLEKESYVHRT-GRTGRAGNQGKAITFVTP 348


>gi|309803064|ref|ZP_07697163.1| putative ComF operon protein 1 [Lactobacillus iners LactinV 11V1-d]
 gi|308164845|gb|EFO67093.1| putative ComF operon protein 1 [Lactobacillus iners LactinV 11V1-d]
          Length = 429

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 139/346 (40%), Gaps = 53/346 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q     D+L  +  +N    ++    G+GKT +   A+   ++ G    +  P   +
Sbjct: 91  TDRQAKVSADLLHAL--QNNQDHLVHAVTGAGKTEMLFKAVEYFLQQGKYVALATPRLDV 148

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             + Y  + +   NT+I          + H + A +     +  II  TH L    ++YY
Sbjct: 149 VNELYPRMCRAFANTKI---------GKYHGKMAQD--PDNEPFIICTTHQL----LKYY 193

Query: 394 KLI-LVIVDEQHRFGVQQRLKL---TQKATAP--HVLLMTATPIPRTLVLTSLGDIDISK 447
           +   L+I+DE   F       L    + A  P      +TATP    L     G++  S 
Sbjct: 194 QAFDLIIIDEVDAFPYVNNPMLYYGAKNAIKPTGQTFYLTATPSKDMLTKVKNGEMGYSL 253

Query: 448 ITEKPAG------------RKPIK-TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + ++  G            RK I    + P      +I+ L  +++ GK      P+I E
Sbjct: 254 LQQRFHGGLLAVPEEYLFWRKYINGESLHPF-----LIKVLNEIINSGKPLLVFVPRIAE 308

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                    +  +  + +   S + I     SD +++  ++ F+N    +L+ TT++E G
Sbjct: 309 ---------LGLYQIILQKKYSQLVIASVHSSDKNRQQKVEQFRNREISILLTTTILERG 359

Query: 555 IDVVDASIIIIENAEH-FGLAQLHQLRGRVGRG--EEISSCILLYH 597
           +      +I+I   +  +  A L Q+ GRVGR   +++   I  YH
Sbjct: 360 VTFPGVQVIVIAADDAIYTTAGLVQIAGRVGRAATDQVGRVIFCYH 405


>gi|302333727|gb|ADL23920.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 506

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 156/376 (41%), Gaps = 60/376 (15%)

Query: 249 KEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGK 306
           KE+GI  N       + L ++ F  PT  Q+ +I   LQ +        IL Q   G+GK
Sbjct: 5   KELGISDNT-----VQSLESMGFKEPTPIQKDSIPYALQGID-------ILGQAQTGTGK 52

Query: 307 TLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           T    I +   V  + G Q++I+AP   LA Q  E ++++++   + V  + G MP   +
Sbjct: 53  TGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQ 112

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQ 416
            KAL++       I++GT     D +          + LIL   DE    G    ++   
Sbjct: 113 IKALKK----GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIM 168

Query: 417 K---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
               A     +L +AT +P+ +         + +  + P   K IKT+   ++  D  IE
Sbjct: 169 DKIPAVQRQTMLFSAT-MPKAIQAL------VQQFMKSP---KIIKTMNNEMS--DPQIE 216

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-------AIIHGRMS 526
               ++ E +K +       +  +     V  R     +  TS++         +HG ++
Sbjct: 217 EFYTIVKELEK-FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDIT 275

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGR 582
              +  V+  FKN    +L+AT V   G+D+   S +    I ++ E +     H++ GR
Sbjct: 276 QAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY----THRI-GR 330

Query: 583 VGRGEEISSCILLYHP 598
            GR  +    +   +P
Sbjct: 331 TGRAGKEGIAVTFVNP 346


>gi|317129136|ref|YP_004095418.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315474084|gb|ADU30687.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 528

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 146/351 (41%), Gaps = 34/351 (9%)

Query: 263 QKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           +K ++++ F +P+  QE  I +IL+          I Q   G+GKT    I +   V + 
Sbjct: 14  KKAIKDMGFEAPSPIQEKVIPEILKGHDV------IGQAQTGTGKTAAFGIPLLEKVTSD 67

Query: 322 GQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            Q  ++I+ P   LA Q    ++K ++  +  +  I G     H+ KAL+R       ++
Sbjct: 68  RQVQSLILTPTRELAIQVAGELQKLSKFKRSQILPIYGGQSIGHQIKALKR----GVQVV 123

Query: 380 IGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT 429
           +GT     D +          + LIL   DE    G  + ++  L Q  T    +L +AT
Sbjct: 124 VGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNRQTMLFSAT 183

Query: 430 PIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  R L    + +     I++       I  V   +   +++    +V+ SE      
Sbjct: 184 MPPPIRKLSNKYMNNPKQVTISKGEVTAPSINQVYFKVLEKNKLDSLCRVIDSETIDLGI 243

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I  + +       + V E   +L      +  + HG ++   ++ VM  F++ + + LIA
Sbjct: 244 IFCRTK-------KGVAELTEALQARGYMADGL-HGDLTQSQRDIVMKKFRDSSIEFLIA 295

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           T V   GIDV + S +I  +      + +H++ GR GR       + L  P
Sbjct: 296 TDVAARGIDVENVSHVINYDIPQDPESYVHRI-GRTGRAGREGVAVTLVTP 345


>gi|229173149|ref|ZP_04300699.1| ATP-dependent RNA helicase [Bacillus cereus MM3]
 gi|228610326|gb|EEK67598.1| ATP-dependent RNA helicase [Bacillus cereus MM3]
          Length = 446

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 135/316 (42%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++      QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPKSSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNFDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|221232469|ref|YP_002511622.1| primosomal protein N' [Streptococcus pneumoniae ATCC 700669]
 gi|303254348|ref|ZP_07340456.1| primosome assembly protein PriA [Streptococcus pneumoniae BS455]
 gi|303258673|ref|ZP_07344653.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae SP-BS293]
 gi|303261836|ref|ZP_07347782.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae SP14-BS292]
 gi|303263699|ref|ZP_07349621.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae BS397]
 gi|303266639|ref|ZP_07352523.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae BS457]
 gi|303268529|ref|ZP_07354322.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae BS458]
 gi|220674930|emb|CAR69506.1| putative primosomal protein N' [Streptococcus pneumoniae ATCC
           700669]
 gi|301802437|emb|CBW35192.1| putative primosomal protein N' [Streptococcus pneumoniae INV200]
 gi|302598699|gb|EFL65737.1| primosome assembly protein PriA [Streptococcus pneumoniae BS455]
 gi|302636919|gb|EFL67408.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae SP14-BS292]
 gi|302640174|gb|EFL70629.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae SP-BS293]
 gi|302641924|gb|EFL72278.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae BS458]
 gi|302643801|gb|EFL74064.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae BS457]
 gi|302646737|gb|EFL76962.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae BS397]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEVAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHARDVAILRAQYNQATLVLGS 420


>gi|218190304|gb|EEC72731.1| hypothetical protein OsI_06346 [Oryza sativa Indica Group]
          Length = 1382

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 121/297 (40%), Gaps = 59/297 (19%)

Query: 302 VGSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI     +         G   +++AP   LA Q  +   K+ +++++    
Sbjct: 649 TGSGKTLGYLIPAFIHLRRYQNNPMLGPTVLVLAPTRELASQIQDEAVKFGRSSRVSCTC 708

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---- 405
           + G   +  + + LER     A I++ T     D ++  K+ L     +++DE  R    
Sbjct: 709 LYGGTSKGLQLRELER----GADIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDM 764

Query: 406 -FGVQ----------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID-------ISK 447
            F  Q           R  L   AT P  +   A  + +  V  ++G ID       I++
Sbjct: 765 GFEPQIRKIVDEIPRNRQTLMYTATWPKEVTKIAGDLLKDPVQVNIGSIDELVANKSITQ 824

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             E          V+ P+++    +E++      G K    C   ++  +   R +   F
Sbjct: 825 YVE----------VVPPLDK-QRRLEQILRAQERGSKVIIFC-STKKMCDQLARDIGRSF 872

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +         A IHG  S  ++++V++ F+ G   +L+AT V   G+D+ D  ++I
Sbjct: 873 GA---------ASIHGDKSQAERDNVLNQFRTGRAPILVATDVAARGLDIKDIRVVI 920


>gi|163843766|ref|YP_001628170.1| excinuclease ABC subunit B [Brucella suis ATCC 23445]
 gi|163674489|gb|ABY38600.1| excinuclease ABC, B subunit [Brucella suis ATCC 23445]
          Length = 940

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 146 KSEGGIPIRME----------TSFEPSGDQPTAIRDLVEGLENQDRT-QVLLGVTGSGKT 194

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                 MA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 195 FT----MAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 234


>gi|328945532|gb|EGG39683.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1087]
          Length = 523

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 130/335 (38%), Gaps = 38/335 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT          ++      QA+I+AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I        Q   LIL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLN 157

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G  + ++           +++  P  R  +L S    D  K       ++P    I   
Sbjct: 158 MGFLEDIES----------IISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK 207

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI----- 520
               E++++  + + E +K +    ++ +  +     V  R     +  T  + I     
Sbjct: 208 ELTTELVDQYYIRVKENEK-FDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKIRGFRA 266

Query: 521 --IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +H+
Sbjct: 267 EGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 326

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + GR GR  +    I    P    N    L +++N
Sbjct: 327 I-GRTGRAGKSGQSITFVAP----NEMGYLQIIEN 356


>gi|291448603|ref|ZP_06587993.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351550|gb|EFE78454.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 496

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 128/319 (40%), Gaps = 35/319 (10%)

Query: 299 QGDVGSGKTL---VALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +G  GSGKTL   +AL+A  A   A  +   A+++ P   LAQQ  + +  Y ++ ++ +
Sbjct: 111 RGRTGSGKTLAFGLALLARTAGQRAEPRQPLALVLVPTRELAQQVTDALTPYARSVRLRL 170

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             + G M    +  AL     G A +++ T    +D I+     L      ++DE  +  
Sbjct: 171 ATVVGGMSIGRQVSALR----GGAEVVVATPGRLKDLIERGDCTLDQVAITVLDEADQMA 226

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIK 459
              F  Q    L Q       +L +AT + R    LV   L D  +  +         ++
Sbjct: 227 DMGFMPQVTALLDQVRPEGQRMLFSAT-LDRNVDLLVRRYLTDPVVHSVDPSAGAVTTME 285

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
             ++ ++  D+     ++   EG+   ++          + +  V+R      +     A
Sbjct: 286 HHVLHVHGTDKHRATTEIAAREGRVMMFL----------DTKHAVDRLTQDLLNSGVRAA 335

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG  S   +   +  FK G   +L+AT V   GI V +  +++  +        LH+ 
Sbjct: 336 ALHGGKSQPQRTRTLAQFKTGHVTVLVATNVAARGIHVDNLDLVVNVDPPTDHKDYLHR- 394

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR  R  E  S + L  P
Sbjct: 395 GGRTARAGESGSVVTLVTP 413


>gi|254719547|ref|ZP_05181358.1| excinuclease ABC subunit B [Brucella sp. 83/13]
 gi|265984556|ref|ZP_06097291.1| excinuclease ABC subunit B [Brucella sp. 83/13]
 gi|306838487|ref|ZP_07471328.1| excinuclease ABC, B subunit [Brucella sp. NF 2653]
 gi|264663148|gb|EEZ33409.1| excinuclease ABC subunit B [Brucella sp. 83/13]
 gi|306406451|gb|EFM62689.1| excinuclease ABC, B subunit [Brucella sp. NF 2653]
          Length = 940

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 146 KSEGGIPIRME----------TSFEPSGDQPTAIRDLVEGLENQDRT-QVLLGVTGSGKT 194

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                 MA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 195 FT----MAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 234


>gi|229031498|ref|ZP_04187498.1| Primosomal protein N' [Bacillus cereus AH1271]
 gi|228729787|gb|EEL80767.1| Primosomal protein N' [Bacillus cereus AH1271]
          Length = 767

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +  G +A+++ P
Sbjct: 228 PFPLTEEQKQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLAKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQ----VAVLHSALSVGEKYDEWRKILRKEVKVVVGARSAVFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|229091449|ref|ZP_04222660.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42]
 gi|228691890|gb|EEL45636.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42]
          Length = 454

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|66047524|ref|YP_237365.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|63258231|gb|AAY39327.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
          Length = 442

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 121/283 (42%), Gaps = 27/283 (9%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHII 379
           +A+++AP   LA Q +E I++Y ++  +      G +   PQ  + +    +       +
Sbjct: 76  RALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVLVATPGRL 135

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP---HVLLMTATPIP- 432
           +  H   Q+++++ +L  +I+DE  R    G  + L+    A  P     LL +AT    
Sbjct: 136 LDLHR--QNAVKFSQLQTLILDEADRMLDLGFAEELRGIY-AVLPKQRQTLLFSATFSDE 192

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L    L D    +++ +      +K  ++ +++      +  + +   KK  W    
Sbjct: 193 IRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKK----RKADLFIHLMKKHRWGQVL 248

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +  K       +V+R  +L  +       IHG      ++  +D FK+   K+L+AT V 
Sbjct: 249 VFAKTRVGVDQLVDRLQALGMNADG----IHGDKPQATRQRALDRFKSNEVKILVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
             G+D+ D   ++  +        +H++ GR GR    GE IS
Sbjct: 305 ARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGLTGEAIS 346


>gi|324502742|gb|ADY41204.1| ATP-dependent RNA helicase DDX46 [Ascaris suum]
          Length = 973

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 132/317 (41%), Gaps = 53/317 (16%)

Query: 302 VGSGKTLVALIAMAAAV-------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+ M   +       E  G  AVIM+P   LA Q ++   K+ +   I V 
Sbjct: 359 TGSGKTLAFLLPMFRHIMDQPELEELDGPIAVIMSPTRELAMQTWKEANKFAKPLNIRVA 418

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHR 405
            + G +  + +   L+R     A +I+ T     D +   K        +  +++DE  R
Sbjct: 419 CVYGGVGISDQIGDLKR----GAEVIVCTVGRLTDMLAANKGKVTNLRRVTYLVLDEADR 474

Query: 406 F---GVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
               G + Q +K+          ++ +   PR +   +   +D           KP++ +
Sbjct: 475 MFDMGFEPQVMKIVNNIRPDRQTVLFSATFPRQMEALARKILD-----------KPVEIL 523

Query: 462 IIPINRIDEVIERLKVVLSEGKK---------AYWICPQI---EEKKESNFRSVVERFNS 509
           +   + + + + +  V+L E +K          YW    +    +K+E     V +   S
Sbjct: 524 VGGKSVVCDDVSQNVVILEEHQKMLKLLELLGVYWEHGNVLVFVDKQEKADELVAQLMRS 583

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            +     + A +HG +   D++S +  FK    KLL+AT+V   G+DV    +++  +  
Sbjct: 584 GY-----NCAPLHGGIDQFDRDSTILDFKAAKIKLLVATSVAARGLDVKKLILVVNYDCP 638

Query: 570 HFGLAQLHQLRGRVGRG 586
           +     +H++ GR GR 
Sbjct: 639 NHYEDYVHRV-GRTGRA 654


>gi|323693539|ref|ZP_08107743.1| hypothetical protein HMPREF9475_02606 [Clostridium symbiosum
           WAL-14673]
 gi|323502394|gb|EGB18252.1| hypothetical protein HMPREF9475_02606 [Clostridium symbiosum
           WAL-14673]
          Length = 422

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 134/332 (40%), Gaps = 42/332 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           PT+ Q+  I  +L+    KN + R      GSGKT    I +   +   E   QA+I+ P
Sbjct: 30  PTEIQQQVIPAMLEG---KNVVGR---APTGSGKTAAFAIPICDKIIWEENLPQALILEP 83

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q  E +    +  ++ V  + G  P   + ++L++    ++HI+ GT     D 
Sbjct: 84  TRELTVQVQEEVFHIGRKKRLKVPAVFGGFPIDKQIRSLKQ----KSHIVTGTPGRVMDH 139

Query: 390 IQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+   LIL     +++DE            V+Q L L        +   T  P  R    
Sbjct: 140 IRRGSLILDKVTCLVIDEADLMLDMGFIDEVKQILDLLSPECRIALFSATLKPEIREFAG 199

Query: 438 TSLGDIDISKITEKP-AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           + + D+ +   TE+P A    I   +   +  ++    L V+  E  +   I        
Sbjct: 200 SHIHDM-VMIFTEQPEAAENAITEELFETDNENKFKVFLNVLYRENPQCCII-------- 250

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    E  N L +          +IHG +   ++   +D+F+ G  + LIAT V   
Sbjct: 251 ---FCGTREMVNVLFQKLRRHRIFCGMIHGELEQKERLKTIDAFRRGAIRYLIATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           GID+ + + +I  +        +H++ GR GR
Sbjct: 308 GIDLENITHVINYDFPTGRETYVHRI-GRTGR 338


>gi|257896094|ref|ZP_05675747.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium Com12]
 gi|257832659|gb|EEV59080.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium Com12]
          Length = 655

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 98/236 (41%), Gaps = 46/236 (19%)

Query: 386 FQDSIQYYKLILVIVDEQH---RFG-------VQQRLKLTQKATAPHVLLMTATPIPRTL 435
           F  ++  + + ++ +DE H   ++G       +Q   +L Q    P ++ +TAT   +  
Sbjct: 175 FIQAMNRWNVCMIAIDEAHCISQWGHDFRPSYLQMAKQLNQLPNRPVIVALTATATIQVA 234

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER----LKVVLSEGKKAYWICPQ 491
                   DI ++ + P G           N I    ER     +VV  + K+ Y +   
Sbjct: 235 A-------DIKRLLKIPDG-----------NHIQTGFERENLRFQVVKDQKKEQYLVEYL 276

Query: 492 IEEKKESNF-----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              K +S       R  V+R   L + F  SI   HG +++ ++ ++ ++F     +L++
Sbjct: 277 KINKNQSGIIYAATRKEVDRIYHLLKKFGFSIGRYHGGLNENERTAMQEAFLYDRLQLIV 336

Query: 547 ATTVIEVGIDVVDASIIIIENAEHF----GLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT    +GI+  +   +I     H+     L   +Q  GR GR    S  ILL+ P
Sbjct: 337 ATNAFGMGINKSNVRFVI-----HYQIPGSLEAYYQEAGRAGRDGLSSEAILLFAP 387


>gi|193222330|emb|CAL61847.2| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 464

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 133/323 (41%), Gaps = 40/323 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQ---HYEFIKKYTQNTQI 350
           I Q   GSGKT    I M   +       Q +++ P   LA Q       + ++  N +I
Sbjct: 45  IAQAKTGSGKTAAFGIGMLQKLNPTWFAIQGLVICPTRELADQVSNELRRLARFADNIKI 104

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +   + G  P    R  +  + HG AHI++GT    +D I    + L     +++DE  R
Sbjct: 105 LT--LCGGAPM---RPQIASLEHG-AHIVVGTPGRLRDHISRNTINLSTVQTLVLDEADR 158

Query: 406 F---GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTV 461
               G  + +            +++A P  R TL+ ++    DI K + +   R P++  
Sbjct: 159 MVDMGFYEEI----------AGIVSACPERRQTLLFSATYPDDIRKASAEFL-RDPVEVK 207

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS------LHEHFT 515
           +   +   ++ +R   V  + + A         +  S       + +       L     
Sbjct: 208 VEAQHDDSQIEQRFYEVGYDDRNAAVATLLKHYRPVSTLAFCNTKIHCRELAAELRAQGF 267

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           S++A+ +G +   +++ ++  F N +C +L+AT V   G+D+     +I  +        
Sbjct: 268 SALAL-YGELEQRERDEILVLFANQSCSVLVATDVAARGLDIQSLGAVINVDVSKDTEVH 326

Query: 576 LHQLRGRVGRGEEISSCILLYHP 598
           +H++ GR GRG++    + L  P
Sbjct: 327 IHRI-GRTGRGQDKGLALSLCAP 348


>gi|229542420|ref|ZP_04431480.1| ATP-dependent DNA helicase RecQ [Bacillus coagulans 36D1]
 gi|229326840|gb|EEN92515.1| ATP-dependent DNA helicase RecQ [Bacillus coagulans 36D1]
          Length = 724

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 21/121 (17%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LH 577
           H  M + +++S  D F      +++AT+   +GID  +   +I     H+ L +     +
Sbjct: 262 HAGMKEAERDSFQDRFLYDDISVMVATSAFGMGIDKSNVRFVI-----HYNLPKNMEAYY 316

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           Q  GR GR  E S CILL+ P   ++ +T+          FLI +   + RK GE   ++
Sbjct: 317 QEAGRAGRDGEESDCILLFAP---QDIHTQT---------FLIEQSANEDRKPGEYAKLR 364

Query: 638 Q 638
           +
Sbjct: 365 K 365


>gi|145588789|ref|YP_001155386.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047195|gb|ABP33822.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 473

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 118/293 (40%), Gaps = 37/293 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LA Q  E    Y+++T +   ++ G +      K    I      I+I T
Sbjct: 106 RALVLTPTRELAVQVAENAASYSKHTDLRAAVVYGGVDM----KEQVAILRNGVEILIAT 161

Query: 383 HALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLV 436
                D I        ++ ++++DE  R      L   Q+       ++   P  R TL+
Sbjct: 162 PGRLLDHIGSKVANLSQVEILVLDEADRMLDMGFLPDLQR-------IIDLIPAQRQTLL 214

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I K+ +    R P+   +   N   + ++++  ++S G K   I   +E + 
Sbjct: 215 FSATFSPEIKKLAQSYL-RTPVTVEVARQNAAADTVKQVVHMVSSGDKQRAIVKVLEART 273

Query: 497 E----------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                      +N R    +     E        IHG  S  ++   +D+FK+G  + L+
Sbjct: 274 RLGLSRQCIIFTNSRLGCAKLARALERDGIKAGAIHGDKSQGERTLTLDAFKSGAIEALV 333

Query: 547 ATTVIEVGIDVVDASIIIIE----NAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           AT V   G+D+ D   +I      NAE F    +H++ GR GR       I L
Sbjct: 334 ATDVAARGLDIPDMPCVINHELPYNAEDF----IHRI-GRTGRAGSKGDAIAL 381


>gi|162312570|ref|XP_001713118.1| SNF2 family helicase Swr1 [Schizosaccharomyces pombe 972h-]
 gi|46397086|sp|O13682|SWR1_SCHPO RecName: Full=Helicase swr1
 gi|159884045|emb|CAA22447.2| SNF2 family helicase Swr1 [Schizosaccharomyces pombe]
          Length = 1288

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 12/148 (8%)

Query: 297 ILQGDVGSGKTL--VALIA-MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           IL  ++G GKT+  +AL+A +A   E  G  +I+ P  ++     EF KK+    +I+  
Sbjct: 469 ILADEMGLGKTIQTIALLAHLACEKENWGPHLIIVPTSVMLNWEMEF-KKFLPGFKILT- 526

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHAL-FQDS--IQYYKLILVIVDEQHRFG--V 408
              GN PQ  + K          H+ I ++ L  QD    +  K   +I+DE H      
Sbjct: 527 -YYGN-PQERKEKRSGWYKPDTWHVCITSYQLVLQDHQPFRRKKWQYMILDEAHNIKNFR 584

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLV 436
            QR +      A H LL+T TP+   LV
Sbjct: 585 SQRWQSLLNFNAEHRLLLTGTPLQNNLV 612


>gi|2500519|sp|Q40466|IF413_TOBAC RecName: Full=Eukaryotic initiation factor 4A-13; Short=eIF-4A-13;
           AltName: Full=ATP-dependent RNA helicase eIF4A-13
 gi|485941|emb|CAA55741.1| unnamed protein product [Nicotiana tabacum]
          Length = 355

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 112/291 (38%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++   L        +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLS 196

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V + +AT  P  L +T        K   +P        V I
Sbjct: 197 RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMNQP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R D  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352


>gi|330834740|ref|YP_004409468.1| type III restriction enzyme, res subunit [Metallosphaera cuprina
           Ar-4]
 gi|329566879|gb|AEB94984.1| type III restriction enzyme, res subunit [Metallosphaera cuprina
           Ar-4]
          Length = 654

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 157/397 (39%), Gaps = 87/397 (21%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
            +++I   + FSP   Q++ I DIL+ + Q   +  ++    GSGKTL+ L   +     
Sbjct: 7   FSEEIKERLGFSPYPYQKTVINDILRALGQSKFL--VVSMPTGSGKTLIELFVASQLASE 64

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK---------ALERI 371
           G + +++ P  +L  Q Y     +++    + E   GN     R K         + +  
Sbjct: 65  GMRVLVLEPTRLLCDQMYHNF--WSKVFDDVGEEYEGNCESFERGKRVIVSTPITSAKCT 122

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLIL-----------VIVDEQHRFGVQQRLKLTQKATA 420
               A II   H  F D  +Y   I+            ++    R+ V    KL Q   A
Sbjct: 123 PKVDAVIIDEVHHAFGDP-RYISAIVSMSPKLVIGFTALLPSNKRYRVDS--KLIQTLGA 179

Query: 421 PHVL---LMTATPIPRTLVL----TSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVI 472
           P  L       + I  T VL      + D D++ + E  A    +K  +    R D + +
Sbjct: 180 PSFLTYDFRKLSEIDPTFVLPKAIADVFDADMNGV-ENVAYEALLKNKV----RGDYQAL 234

Query: 473 ERLKVVL-SEGKKAYWICPQIEEKKE--------SNF----------RSVVERFNS--LH 511
             L+  L S GK+A+  C  +E  K+        SN           RS+ +  NS  + 
Sbjct: 235 GFLRYTLYSNGKEAF--CESLENLKDRVSDNLPFSNLCSSTDLGHKARSLKDILNSYDIE 292

Query: 512 EH-----FTSSIAIIH------------------GRMSDIDKESVMDSFKNGTCKLLIAT 548
           EH     FTS  +  H                  G +   ++  ++D  K G   ++I+T
Sbjct: 293 EHKPILIFTSRRSTAHEFEIVLHNLGVKRVKTLTGELKKEERLKIVDEAKRGLVDVIIST 352

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            V E GID+ +A ++I+ +     L + +Q  GR+ R
Sbjct: 353 HVGEEGIDIPEAKLLIMTDVPKSPL-RFYQRLGRLIR 388


>gi|260774297|ref|ZP_05883212.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
 gi|260611258|gb|EEX36462.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
          Length = 633

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 116/291 (39%), Gaps = 36/291 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA++MAP   LA Q    IK   +N + + V  I G      + +AL+      AHII+G
Sbjct: 76  QAIVMAPTRELAIQVAAEIKTLGKNIKGLKVLEIYGGASIVDQMRALK----SGAHIIVG 131

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV-LLMTATPIPRTLVLTSL 440
           T    +D I   +L L   DE H F + +  ++ +      V  +M  +P     VL S 
Sbjct: 132 TPGRVKDLITRERLHL---DECHTFVLDEADEMLKMGFVDDVTWIMEQSPETAQRVLFSA 188

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE------- 493
               I K       R P +  +   N+    +E          + YW+   +E       
Sbjct: 189 TMPPIVKDIVDRFLRDPARVDVAGSNQTVAKVE----------QQYWVVKGVEKDEAMAR 238

Query: 494 --EKKESNFRSVVERFNSLHEHFTSSI-------AIIHGRMSDIDKESVMDSFKNGTCKL 544
             E +E++   V  R     E     +       A +HG +    +E  +D  K G   +
Sbjct: 239 LLETEETDASIVFVRTRQDTERLADWLIARGFKAAALHGDIPQSLRERTVDHIKQGVIDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           L+AT V+  G+DV   + +   +      + +H++ GR GR       ILL
Sbjct: 299 LVATDVVARGLDVPRINHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILL 348


>gi|229109888|ref|ZP_04239470.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15]
 gi|228673542|gb|EEL28804.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15]
          Length = 458

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNFDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|255531453|ref|YP_003091825.1| primosomal protein N' [Pedobacter heparinus DSM 2366]
 gi|255344437|gb|ACU03763.1| primosomal protein N' [Pedobacter heparinus DSM 2366]
          Length = 824

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 72/144 (50%), Gaps = 9/144 (6%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           + F  + +Q+ A+  I  +  +K+ +L  L G   SGKT + +  +  A+E GGQ + + 
Sbjct: 285 LNFELSAAQQQALTGIEMEFERKDVVL--LHGITASGKTQIYIKLIEKAIEQGGQVLFLL 342

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
           P   L  Q  + I++Y  +    + +         R +   ++ +G+  +++G   A+F 
Sbjct: 343 PEIALTTQIVQRIQRYFGDA---IGVYHSKFNNNERVEIWNKVLNGKYRVVLGARSAVF- 398

Query: 388 DSIQYYKLILVIVDEQHRFGVQQR 411
             + + +L L++VDE+H    +Q+
Sbjct: 399 --LPFKELKLIVVDEEHESSYKQQ 420


>gi|226326787|ref|ZP_03802305.1| hypothetical protein PROPEN_00647 [Proteus penneri ATCC 35198]
 gi|225204624|gb|EEG86978.1| hypothetical protein PROPEN_00647 [Proteus penneri ATCC 35198]
          Length = 393

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 7/116 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+I+ P IG+  Q     I+++       V+++
Sbjct: 222 LLLGITGSGKTEVYLSVLEKILAEGKQALILVPEIGLTPQT----IRRFKARFNAPVDVL 277

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +    R     R   G   IIIGT +      Q+  L ++I+DE+H    +Q+
Sbjct: 278 HSGLNDTERLAVWLRAKRGDNAIIIGTRSALLTPFQH--LGIIIIDEEHDGSYKQQ 331


>gi|156307367|ref|XP_001617620.1| hypothetical protein NEMVEDRAFT_v1g225933 [Nematostella vectensis]
 gi|156194875|gb|EDO25520.1| predicted protein [Nematostella vectensis]
          Length = 371

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           R   ER N+L      S  + H  +    +E+  + + N   + ++ATT   +GID  D 
Sbjct: 168 RKTTERINNLLLQNGYSSVVYHAGLDKKVRENAQNDWLNNNTETIVATTAFGMGIDKPDV 227

Query: 561 SIII-IENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +++  +  EH  L   +Q  GR GR E  +  ILLY+
Sbjct: 228 RLVVNYDLPEH--LEAYYQESGRAGRDELPAKSILLYN 263


>gi|145348935|ref|XP_001418897.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579127|gb|ABO97190.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 396

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 135/328 (41%), Gaps = 56/328 (17%)

Query: 303 GSGKTLVALI-AMAAAVE------------AGGQAV-IMAPIGILAQQHYEFIKKYTQNT 348
           GSGKTL  L+ A+ AA++             G  AV ++AP   L  Q      K  +  
Sbjct: 40  GSGKTLGFLLPAIEAALKDHRENPNVGKKRPGAPAVLVVAPTRELTLQISGVCNKLKKAV 99

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQ 403
            +    + G   Q  + +AL +    QA ++IGT       L   ++Q  +  ++++DE 
Sbjct: 100 PVRAVAVYGGASQEEQEEALAQHT-SQALLVIGTPGRLLAVLESGALQLDRCAMLVLDEA 158

Query: 404 HR---FGVQQRLK-----LTQKATAPHVLLMTAT------PIPRTLVLTSLGDIDISKIT 449
            R    G +++L      L  K +    LL +AT       I +T +      + I   +
Sbjct: 159 DRMLALGFEEQLSTIREALPDKDSGRQTLLFSATFPKAVRAIGKTWLRKGFETVKID--S 216

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS------- 502
           EK    K    V + +  +++ +     V +E KK+  +   I + +  + R+       
Sbjct: 217 EKATVPKDDDDVNVHMAIVEQTVH----VCAEHKKSRKLMKYITKLRAEDGRARSRVLVF 272

Query: 503 -----VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                 V+    L +     ++ +HG M    ++  +  FK G   +LIAT V   G+D+
Sbjct: 273 ANRIKTVQFIADLCKRHNEKVSTLHGTMKQNRRDQALKDFKAGKTPVLIATDVAGRGLDI 332

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGR 585
             A +  + N +  G   + Q R RVGR
Sbjct: 333 --AGLEYVVNWDFPG--SIEQYRHRVGR 356


>gi|89900953|ref|YP_523424.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89345690|gb|ABD69893.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 574

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 148/374 (39%), Gaps = 62/374 (16%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG-DVGSGKTLVALIA 313
           +N+   I + +L     +PT  Q  AI  +L           +L G   G+GKT   ++ 
Sbjct: 6   LNLAPAIIKAVLEQGYETPTPIQAQAIPAVLDGHD-------LLGGAQTGTGKTAAFVLP 58

Query: 314 M--------AAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM--- 359
           M        AA  + GG   +A+++ P   LA Q  E ++ Y +  ++   +I G +   
Sbjct: 59  MLHKLSQSEAARNKFGGIGIRALVLTPTRELAAQVEESVQTYGKYVELTSTVIFGGVGMN 118

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------G 407
           PQ      + R+  G   I++ T     D +Q   L L     +++DE  R         
Sbjct: 119 PQ------ISRVKKG-VDILVATPGRLLDLLQQGVLDLSQVQILVLDEADRMLDMGFIHD 171

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           V++ L +  K     +   T +   R L  T L              + P+   + P N 
Sbjct: 172 VKKVLAVVPKDKQSLLFSATFSEEIRELAATLL--------------KSPLTIQVTPRNT 217

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAII 521
             + I +L   +  GKK   +   ++E+  S    F       N++ E  T S      +
Sbjct: 218 TVQRITQLIHPVGRGKKKALLAHIVQERNWSQVLVFTRTKFGANNVAEFLTKSGINAMAL 277

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG  S   +   +  FK+G  + L+AT +   GID+ D   ++  +  +     +H++ G
Sbjct: 278 HGNKSQAARTQALAGFKSGDIRALVATDIAARGIDIDDLPHVVNYDIPNVCEDYVHRI-G 336

Query: 582 RVGRGEEISSCILL 595
           R GR     + + L
Sbjct: 337 RTGRAGADGAAVNL 350


>gi|297612409|ref|NP_001068490.2| Os11g0689400 [Oryza sativa Japonica Group]
 gi|77552592|gb|ABA95389.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
 gi|255680379|dbj|BAF28853.2| Os11g0689400 [Oryza sativa Japonica Group]
          Length = 1398

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 121/297 (40%), Gaps = 59/297 (19%)

Query: 302 VGSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI     +         G   +++AP   LA Q  +   K+ +++++    
Sbjct: 650 TGSGKTLGYLIPAFIHLRRYQNNPMLGPTVLVLAPTRELASQIQDEAVKFGRSSRVSCTC 709

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---- 405
           + G   +  + + LER     A I++ T     D ++  K+ L     +++DE  R    
Sbjct: 710 LYGGTSKGLQLRELER----GADIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDM 765

Query: 406 -FGVQ----------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID-------ISK 447
            F  Q           R  L   AT P  +   A  + +  V  ++G ID       I++
Sbjct: 766 GFEPQIRKIVDEIPRNRQTLMYTATWPKEVTKIAGDLLKDPVQVNIGSIDELVANKSITQ 825

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
             E          V+ P+++    +E++      G K    C   ++  +   R +   F
Sbjct: 826 YVE----------VVPPLDK-QRRLEQILRAQERGSKVIIFC-STKKMCDQLARDIGRSF 873

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +         A IHG  S  ++++V++ F+ G   +L+AT V   G+D+ D  ++I
Sbjct: 874 GA---------ASIHGDKSQAERDNVLNQFRTGRAPILVATDVAARGLDIKDIRVVI 921


>gi|148261622|ref|YP_001235749.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146403303|gb|ABQ31830.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
          Length = 525

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 7/139 (5%)

Query: 464 PINRIDEVIERLKVVLSEGK-KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IA 519
           P++RID+ +  L +   E K K  W+   +  ++   F       + +  H   +    A
Sbjct: 271 PVDRIDQQV--LLLAPEEKKDKLAWLLADVAVERAIVFTRTKHGADKVTRHLEDAGIGAA 328

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG  S   +E  +D F++G  ++L+AT +   GIDV + S ++     +   + +H++
Sbjct: 329 AIHGNKSQGQRERALDQFRSGRIRVLVATDIAARGIDVDNVSHVVNFELPNVPESYVHRI 388

Query: 580 RGRVGRGEEISSCILLYHP 598
            GR  R       I L  P
Sbjct: 389 -GRTARAGAEGVAISLVEP 406


>gi|116495108|ref|YP_806842.1| primosomal protein N' [Lactobacillus casei ATCC 334]
 gi|116105258|gb|ABJ70400.1| replication restart DNA helicase PriA [Lactobacillus casei ATCC
           334]
          Length = 805

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 19/179 (10%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q + + +P +P   Q++ +  I   +++++    +L+G  GSGKT + L  +A  + AG 
Sbjct: 261 QPLTKPLPLTP--EQQTIVTQINAAVAERDPKTFLLEGVTGSGKTEIYLQVIARVLAAGQ 318

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   L  Q    + +        V ++   +    +     RIA G+A +++G 
Sbjct: 319 TALMLVPEIALTPQ---MVNRVKGRFGTHVAVMHSGLSDGEKYDEWRRIARGEAQVVVGA 375

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATP 430
            +     ++   + + I+DE+H    +Q            LK  Q   AP V+L +ATP
Sbjct: 376 RSAAFAPLK--NIGVFIMDEEHETSYKQDSAPRYHARDVLLKRAQIHHAP-VVLGSATP 431


>gi|332308408|ref|YP_004436259.1| primosomal protein N' [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175737|gb|AEE24991.1| primosomal protein N' [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 725

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 11/168 (6%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P   Q  AI  I   + +    L  ++G  GSGKT V L A+ + +  G Q +I+ P IG
Sbjct: 195 PNVEQAIAISQITAKIGEYASFL--IEGVTGSGKTEVYLQAIESVLTQGKQVLILVPEIG 252

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q    F K++     + V I+  N+    R    ++   GQ  IIIGT +     ++
Sbjct: 253 LTPQTVERFAKRFN----VPVGILHSNLTDNERLLVWQQSHAGQLPIIIGTRSAIFTPMK 308

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              ++  IVDE+H    +Q+  L   A    V+      IP  L+L S
Sbjct: 309 SPGML--IVDEEHDSSYKQQDGLRYHARDLAVMRAAQEKIP--LILGS 352


>gi|322373853|ref|ZP_08048388.1| Snf2 family protein [Streptococcus sp. C150]
 gi|321277225|gb|EFX54295.1| Snf2 family protein [Streptococcus sp. C150]
          Length = 1031

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 14/145 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           IL  D+G GKTL  +  ++A +  G + ++++P  ++     EF KK+T   Q+ V +  
Sbjct: 607 ILADDMGLGKTLQTIAYLSAHLGKGQRVLVLSPSSLIYNWQDEF-KKFT--PQLDVAVSY 663

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL----ILVIVDEQHRFGVQQRL 412
           G  P+       + I      III ++A F+   + YK      L++ + Q     Q ++
Sbjct: 664 GLKPKR------DDIIAEDHQIIITSYASFRQDFEAYKAGKYDYLILDEAQVMKNTQTKI 717

Query: 413 -KLTQKATAPHVLLMTATPIPRTLV 436
            K  +  + PH L ++ TPI   L+
Sbjct: 718 AKYLRDFSVPHCLALSGTPIENHLL 742


>gi|322370340|ref|ZP_08044899.1| ATP-dependent DNA helicase [Haladaptatus paucihalophilus DX253]
 gi|320550048|gb|EFW91703.1| ATP-dependent DNA helicase [Haladaptatus paucihalophilus DX253]
          Length = 945

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV- 557
           N R   E   S  +   ++I + HG +S   +  V D FK+G    L+ T+ +E+GIDV 
Sbjct: 273 NTRQTAEALGSRFKELGANIGVHHGSLSKEARIDVEDRFKDGDLDALLCTSSMELGIDVG 332

Query: 558 -VDASIIIIENAEHFGLAQLHQLRGRVG-RGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
            +D    +++      +A+L Q  GR G R +E+S+  ++   P   ++   +++ +   
Sbjct: 333 RIDH---VVQYQSPREVARLLQRVGRAGHRMDEVSNGTIVTSNP--DDALEAMAIARQAT 387

Query: 616 DG 617
           DG
Sbjct: 388 DG 389


>gi|319775328|ref|YP_004137816.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047]
 gi|319897768|ref|YP_004135965.1| ATP-dependent DNA helicase [Haemophilus influenzae F3031]
 gi|329122676|ref|ZP_08251254.1| ATP-dependent helicase RecQ [Haemophilus aegyptius ATCC 11116]
 gi|317433274|emb|CBY81649.1| ATP-dependent DNA helicase [Haemophilus influenzae F3031]
 gi|317449919|emb|CBY86131.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047]
 gi|327472550|gb|EGF17980.1| ATP-dependent helicase RecQ [Haemophilus aegyptius ATCC 11116]
          Length = 619

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 98/241 (40%), Gaps = 50/241 (20%)

Query: 382 THALFQDSIQYYKLILVIVDEQH---RFGVQQRLKLTQ----KATAPH--VLLMTATP-- 430
           T++ FQ  I Y K+  + +DE H   ++G   R + TQ    KA+ P   ++ +TAT   
Sbjct: 131 TNSFFQ-LISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADY 189

Query: 431 -----IPRTLVLTSL----GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                I R L L +L    G  D      +P  R  ++    P+ ++        V+  +
Sbjct: 190 ATQQDILRHLNLKNLHKYIGSFD------RPNIRYTLEEKYKPMEQLTRF-----VLAQK 238

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           GK     C         N R+ VER      +   S A  H  M    +E V   F+   
Sbjct: 239 GKSGIIYC---------NSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDN 289

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYH 597
            ++++AT    +GI+  +   +      HF L +     +Q  GR GR +  +  +L Y 
Sbjct: 290 VQVVVATIAFGMGINKSNVRFV-----AHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344

Query: 598 P 598
           P
Sbjct: 345 P 345


>gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
 gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
          Length = 522

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 137/337 (40%), Gaps = 42/337 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + M   ++      Q ++++P   LA Q  E + +  ++ ++ V 
Sbjct: 42  IGQAQTGTGKTAAFGLPMLEKIDTSSSHLQGLVISPTRELAIQTQEELYRLGKDKKVRVM 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHR 405
            + G      + + L+     + HI++GT     D I  + L L  V        DE   
Sbjct: 102 AVYGGADIGRQIRQLK----DRPHIVVGTPGRMLDHINRHTLKLETVETLVLDEADEMLN 157

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  + ++  +++  +    LL +AT  P    + S+G     K  + P   K IK   +
Sbjct: 158 MGFLEDIESIISKVPSTRQTLLFSATMPP---AIKSIG----VKFMQNPEHVK-IKAKEM 209

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--- 520
             + ID+       V S+  + + I  ++ + +      +  R     +     +     
Sbjct: 210 TADLIDQY-----YVRSKDFEKFDIMTRLLDVQTPELTIIFGRTKRRVDELARGLETRGY 264

Query: 521 ----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG +S   + SV+ SFKNG   +L+AT V   G+D+   + +   +      + +
Sbjct: 265 KAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYV 324

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           H++ GR GR  +    +    P    N  + L  ++N
Sbjct: 325 HRI-GRTGRAGKGGMSVTFVTP----NEMSYLHTIEN 356


>gi|312881011|ref|ZP_07740811.1| ATP-dependent DNA helicase, RecQ-like [Aminomonas paucivorans DSM
           12260]
 gi|310784302|gb|EFQ24700.1| ATP-dependent DNA helicase, RecQ-like [Aminomonas paucivorans DSM
           12260]
          Length = 599

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           H  + D ++E+  ++F      +++AT    +GID  D   ++  N     L   +Q  G
Sbjct: 259 HAGLEDEEREANQEAFVRDRAPVMVATNAFGMGIDKSDVRFVVHYNMP-LSLDGYYQEAG 317

Query: 582 RVGRGEEISSCILLYHP 598
           R GR  E S C+LLY P
Sbjct: 318 RAGRDGERSECLLLYAP 334


>gi|296234835|ref|XP_002762632.1| PREDICTED: ATP-dependent RNA helicase DDX3Y [Callithrix jacchus]
          Length = 656

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 85/408 (20%), Positives = 163/408 (39%), Gaps = 80/408 (19%)

Query: 214 KAKDFEWTSP--ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK----------- 260
           K+ + +W+ P    E L  +    G   +      F+K   +P+   G            
Sbjct: 126 KSDEDDWSKPLPPSECLERELFSGGNTGI-----NFEKYDHVPVEATGSNCPPHIENFSD 180

Query: 261 --IAQKILRNIPFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             + + I+ NI  +    PT  Q+ AI  I      K  ++   Q   GSGKT   L+ +
Sbjct: 181 IDMGEIIMGNIELTRYTRPTPVQKHAIPII----KGKRDLMACAQ--TGSGKTAAFLLPI 234

Query: 315 AA------------AVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            +            AV+  G+         ++++AP   LA Q YE  +K++  +++   
Sbjct: 235 LSQMYTDGPGEALKAVKGNGRYGHSKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 294

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
           ++ G      +   LE   HG  H+++ T     D ++  K+ L     +++DE  R   
Sbjct: 295 VVYGGANIGQQIGDLE---HG-CHLLVATPGRLVDMMERRKIALDFCKYLVLDEADRMLD 350

Query: 406 --FGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRK 456
             F  Q R  + Q    P    H ++ +AT  P+ + + +   +D      +    +  +
Sbjct: 351 MGFEPQIRRIVEQDCMPPKGVRHTMMFSAT-FPKKIQMLARDFLDEYIFLAVGRVGSTSE 409

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I   ++ +  +D+    L ++ + G+ +  I   +  KKE      V+       H   
Sbjct: 410 NITQKVVWVEDLDKRSFLLDLLGATGRDSL-ILVFVVTKKE------VDSLEEFLYHEGY 462

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +   IHG  S   +E  +  F++G   +L+AT V   G+D+ +   +I
Sbjct: 463 ACTSIHGDRSQRAREEALRQFRSGKSPILVATAVAARGLDISNVRHVI 510


>gi|254517068|ref|ZP_05129126.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
 gi|219674573|gb|EED30941.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
          Length = 609

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 135/319 (42%), Gaps = 37/319 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ--II 351
           + Q   G+GKT    + + A ++   +  QA+++AP   LA Q  E  +KY ++++   +
Sbjct: 49  VGQAQTGTGKTAAFALPILARLDPKLSKPQALVLAPTRELAIQVAEAFQKYARHSKGFKV 108

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQ 403
           + I  G+      R  L ++  G  H+I+GT     D ++           L+L   DE 
Sbjct: 109 LPIYGGS----DYRTQLRQLERG-VHVIVGTPGRVMDHMRRGSLNLSALTTLVLDEADEM 163

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            R G    ++           ++  TP  R + L S    D  +   K    KP + + I
Sbjct: 164 LRMGFIDDVEW----------ILEQTPPKRQIALFSATMPDAIRRIAKQHLNKP-EEITI 212

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF----NSLHEHFTS--- 516
            +  +     R +V +  G        +I E ++++   +  R       L +  ++   
Sbjct: 213 KLKTVTNASIRQRVWMMGGMHKLDALTRILETEDTDGVIIFVRTRIATQELADKLSARGY 272

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           + A ++G ++   +E  +++ K G   +LIAT V   G+DV   S +I  +  +   A +
Sbjct: 273 ATAALNGDIAQNQREKTVENLKKGGLDILIATDVAARGLDVERISHVINYDIPNDPEAYV 332

Query: 577 HQLRGRVGRGEEISSCILL 595
           H++ GR GR       IL 
Sbjct: 333 HRI-GRTGRAGRTGEAILF 350


>gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
 gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
          Length = 511

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 123/304 (40%), Gaps = 57/304 (18%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQ-AHRRKALERIAHGQAHI 378
           +A+I+ P   LA Q    +  Y ++T +   ++ G +   PQ A  R+ +E        I
Sbjct: 111 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVE--------I 162

Query: 379 IIGTHALFQDSIQYY-----KLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLM 426
           +I T     D +Q       ++ ++++DE  R         +Q+ L L  K      LL 
Sbjct: 163 LIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER--QTLLF 220

Query: 427 TATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +AT  P  + L  T L              R P    +   N  +  + ++   ++EG K
Sbjct: 221 SATFSPEIKKLASTYL--------------RNPQTIEVARSNSTNANVTQIVYDVAEGDK 266

Query: 485 AYWICPQIEEK--KE----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
              +   + E+  K+     N +    R     E      + IHG  S +++   +D+FK
Sbjct: 267 QAAVVQLLRERGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFK 326

Query: 539 NGTCKLLIATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            G  + L+AT V   G+D+ +   +I      NAE +    +H++ GR GR       + 
Sbjct: 327 RGEVEALVATDVAARGLDIAELPAVINFDLPFNAEDY----VHRI-GRTGRAGATGDALS 381

Query: 595 LYHP 598
           L  P
Sbjct: 382 LCSP 385


>gi|119946353|ref|YP_944033.1| ATP-dependent RNA helicase DbpA [Psychromonas ingrahamii 37]
 gi|119864957|gb|ABM04434.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 462

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 146/344 (42%), Gaps = 49/344 (14%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIV 352
           I QG  GSGKT    + L+   +      Q++I+ P   LA Q  + +++  +    I V
Sbjct: 45  IAQGKTGSGKTAAFGLGLLEKLSVKRFRIQSLILCPTRELADQVGKELRRLARTIHNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF- 406
             + G +P   +  +LE   HG AHII+GT    +D     +++   L ++++DE  R  
Sbjct: 105 LTLCGGVPFGPQIGSLE---HG-AHIIVGTPGRIEDHLRKGTLRLDDLEVLVLDEADRML 160

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP----AGRKPI 458
             G Q  +   + Q       LL +AT  P  +   +       +I   P    A  K  
Sbjct: 161 DMGFQASIDAIIDQAPKKRQTLLFSAT-FPEKINNIA------KRIMTDPIMVKAESKHD 213

Query: 459 KTVIIPI-----NRIDEVIE-RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            +VI        N  D +I  RL +   + + +   C     KKE     V E  + L  
Sbjct: 214 DSVIAQHFYKVENSQDRMIALRLLLQKYQPESSVVFC---NTKKE-----VQEVADELAN 265

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              S++A+ HG +   D++  +  F N +  +L+AT V   G+D+ + S +   +  H  
Sbjct: 266 RGFSALAL-HGDLEQKDRDQALIRFANKSASILVATDVAARGLDIDNLSAVFNYHIAHDQ 324

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
              +H++ GR GR          Y    S   + ++SVL++  D
Sbjct: 325 ELHVHRI-GRTGRAGNKGLAFSFY----SDKEHHKVSVLEDYLD 363


>gi|90408147|ref|ZP_01216316.1| primosome assembly protein PriA [Psychromonas sp. CNPT3]
 gi|90310759|gb|EAS38875.1| primosome assembly protein PriA [Psychromonas sp. CNPT3]
          Length = 730

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 167/436 (38%), Gaps = 117/436 (26%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T  Q  AI  + Q  +Q N  L  L+G  GSGKT V L  +   ++ G Q +I+ P IG+
Sbjct: 207 TAEQAIAITAVNQQNTQFNCFL--LEGITGSGKTEVYLNILTPILKMGKQVLIIVPEIGL 264

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH---GQAHIIIGTH-ALFQD 388
             Q    F  ++  N  I ++    N      R+ L+   H   G A IIIGT  A+F D
Sbjct: 265 TPQIVQRFQARF--NLPIYLKHSALNA-----RQQLDTWCHAKQGSAAIIIGTRSAIFSD 317

Query: 389 SIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATPIPRTLVL 437
                 L L+I+DE+H    +Q+           +K       P ++L +ATP   TL  
Sbjct: 318 ---IKNLGLIILDEEHDASFKQQEGFRYHARDFAIKRAHMQNIP-IVLGSATPALETLHN 373

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRI-------DEVIERL--------KVVLSEG 482
              G      +T++    KP  + +I +  +        ++IE +        +V+L   
Sbjct: 374 ALQGKFHHLHLTQRAGSAKPPVSSLINLAGLPLQSGLSPQLIELMGQHLQKDNQVILFLN 433

Query: 483 KKAY----------WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD----- 527
           ++ +          W+   ++  +   F +  ++ N LH H  +S   I  +  D     
Sbjct: 434 RRGFSPVLMCHECGWL---VKCTRCDAFYTYHKKANYLHCHHCASTLPIPKQCHDCGSTQ 490

Query: 528 --------------------------IDKESV---------MDSFKNGTCKLLIATTVIE 552
                                     ID+++          +     G  K+L+ T ++ 
Sbjct: 491 LIANGVGTEQLEQTLQTLFPSYPVIRIDRDNTRKKESFDQYLTDIHQGKYKILLGTQMLA 550

Query: 553 VG-----------IDVVDASIIIIENAEHFGLAQLH-QLRGRVGRGEEISSCILLYHPP- 599
            G           ID VD ++   +      LAQL  Q+ GR GR E+    +L  H P 
Sbjct: 551 KGHHFPNVTLVALID-VDGALFCNDFRASERLAQLFTQVSGRAGRAEKKGQVVLQTHHPE 609

Query: 600 ------LSKNSYTRLS 609
                 L  + YT+ S
Sbjct: 610 HALLQELINSGYTQFS 625


>gi|2500521|sp|Q40468|IF415_TOBAC RecName: Full=Eukaryotic initiation factor 4A-15; Short=eIF-4A-15;
           AltName: Full=ATP-dependent RNA helicase eIF4A-15
 gi|485945|emb|CAA55739.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 121/312 (38%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLV---ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      ++   A      QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLAYELLECQALVLAPTRELAQQIEKVMRALGDYLGVKVT 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++   L        +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLS 196

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V + +AT  P  L +T        K   KP        V I
Sbjct: 197 RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMNKP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPE 361

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 362 NYLHRI-GRSGR 372


>gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 550

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 66/342 (19%), Positives = 141/342 (41%), Gaps = 36/342 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGG-QA 324
           +P+  Q  AI  +LQ          +     G+GKT      L+ L++     +AG  + 
Sbjct: 34  TPSPIQAQAIPAVLQGQDV------MAAAQTGTGKTAGFTLPLLELLSKGQKAQAGQVRT 87

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +   +   ++ G +P   +   + ++ HG   +++ T  
Sbjct: 88  LVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQ---IAKLRHG-VDVLVATPG 143

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 144 RLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRK-------ILAILPKQRQNLMFS 196

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +++    + +G+KA  +   I++     
Sbjct: 197 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKAALLTQLIKQHDWQQ 256

Query: 500 ---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F       N L ++   +    A IHG  S   +   +  FKNG  ++L+AT +   
Sbjct: 257 VLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVATDIAAR 316

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           G+D+     ++  +  +     +H++ GR GR       + L
Sbjct: 317 GLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGQAVSL 357


>gi|94984498|ref|YP_603862.1| DEAD/DEAH box helicase-like protein [Deinococcus geothermalis DSM
           11300]
 gi|94554779|gb|ABF44693.1| DEAD/DEAH box helicase-like protein [Deinococcus geothermalis DSM
           11300]
          Length = 876

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDI-DKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           RS   R  S +     S + +H  M+   D+E  +  F+  +  ++ AT  +E G+D+ D
Sbjct: 287 RSRAARLYSTYRAQPLSRSHVHLYMAGTSDREGRLTEFRRASSGVMFATNALEAGVDIGD 346

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
             ++II+      +A   Q+ GR GR   ++  ++LY P L++  
Sbjct: 347 LEVVIIDGYPGSRMA-FRQMAGRAGR---VAPGLVLYLPALNEQG 387


>gi|321479177|gb|EFX90133.1| hypothetical protein DAPPUDRAFT_300157 [Daphnia pulex]
          Length = 404

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 141/340 (41%), Gaps = 57/340 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  Q+ AI  ++     K R + I Q   G+GKT    I++  ++E      Q ++++P
Sbjct: 54  PSAIQQRAIAPVI-----KGRDV-IAQAQSGTGKTATFSISILQSLEIQTRETQILVLSP 107

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I        +      G        + L+   +GQ HI+ GT     D 
Sbjct: 108 TRELAVQIQKVILALGDYMNVQCHACIGGTNVGEDVRKLD---YGQ-HIVSGTPGRVFDM 163

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++    +   P   V+L++AT     L +TS
Sbjct: 164 IRRRTLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLSATLPHEILEMTS 223

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDE------------VIERLKVVLSEGKKA 485
               D  +I  K      + IK   + + R +              I +  +  +  +K 
Sbjct: 224 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 283

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            W+    E+ +E+NF                +++ +HG M   +++++M  F+NG  ++L
Sbjct: 284 DWLT---EKMREANF----------------TVSSMHGDMPQKERDTIMKEFRNGQSRVL 324

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           I T V   GIDV   S++I  +  +     +H++ GR GR
Sbjct: 325 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI-GRSGR 363


>gi|301025571|ref|ZP_07189094.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|300395891|gb|EFJ79429.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
          Length = 457

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 45  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 104

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 105 T--LCGGQPFGLQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 158

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 159 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 218

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 219 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 270

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 271 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 313

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345


>gi|258577621|ref|XP_002542992.1| hypothetical protein UREG_02508 [Uncinocarpus reesii 1704]
 gi|237903258|gb|EEP77659.1| hypothetical protein UREG_02508 [Uncinocarpus reesii 1704]
          Length = 783

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 118/299 (39%), Gaps = 42/299 (14%)

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+I+AP   LAQQ     +K+       V  I G      +  +L       A III
Sbjct: 421 GPYAIILAPTRELAQQIENEARKFCSPLGFNVVSIVGGHSLEEQSFSL----RNGAEIII 476

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKL-------------TQKAT 419
            T     D I+   L+L     VI+DE  R    G ++ +               T +A 
Sbjct: 477 ATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTDEAE 536

Query: 420 APHVLLMTATPIPR---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
            P  +        R   T++ T+     + +I  K   R  I T+      +D V +R++
Sbjct: 537 DPRAMSQHVGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIITIGNVGEAVDTVEQRVE 596

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----------SIAIIHGRMS 526
            +  E K+   +   +       +R  +  F ++  +  +          S   +HG  +
Sbjct: 597 FIAGEDKRKKRLADIL---ASGEYRPPIIVFVNIKRNCDAVARDIKQMGFSAVTLHGSKT 653

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +E+ + S +NG   +L+AT +   GIDV D S+++  N      +  H++ GR GR
Sbjct: 654 QEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRI-GRTGR 711


>gi|255955551|ref|XP_002568528.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590239|emb|CAP96415.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 416

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 146/354 (41%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I+    ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFAISTLQIIDTVVRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + + ++ +GQ H++ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVG---EDIRKLDYGQ-HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT +P      
Sbjct: 157 MIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT-LP------ 209

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E 
Sbjct: 210 ----YDVLDMTTKFMT-DPVRVLV----------KRDELTL-EGIKQYFIAV---EKEEW 250

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 251 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLADKMREANFT--VSSMHGEMPQKERDSIMQ 308

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 309 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENY----IHRI-GRSGR 357


>gi|196231991|ref|ZP_03130847.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196224113|gb|EDY18627.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 405

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 128/304 (42%), Gaps = 39/304 (12%)

Query: 302 VGSGKTLVALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            G+GKT    + +   +++ G  +A+I+ P   LA Q     + Y++   + V ++ G +
Sbjct: 47  TGTGKTAAFALPLLTKLKSHGDLRALILEPTRELAAQVETAFRDYSRFMDVQVGLVHGGV 106

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQD----------SIQYYKLILVIVDEQHRFGV- 408
               +R  L++     A +++ T     D          +IQY  L+L  VD     G  
Sbjct: 107 GFGSQRSMLQK----GADVLVATPGRLLDFLEDGTANLKNIQY--LVLDEVDRMLDMGFL 160

Query: 409 -QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV---IIP 464
            Q R  + +       L  +AT  P    +T     D  ++ E  A R P +TV   + P
Sbjct: 161 PQVRRIVDRVPKERQTLFFSATLPPELETMTKWLLKDPEQV-EIGARRSPAETVTHALYP 219

Query: 465 INRIDEVIERLKVVLSEGK---KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           + + D+  + L  +L   K      +   +I   K      V  R   L      S+A++
Sbjct: 220 VAK-DQKFDLLIALLERTKFDSAIIFTSTKIMADK------VAHRLKDLKH----SVAVL 268

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           H   +  ++E  +  FK+G  ++++AT +   G+D+   S +I  +        +H++ G
Sbjct: 269 HSNRTQREREDALAGFKSGKYEVMVATDIAARGLDIAGVSHVINYDVPQHPEDYVHRI-G 327

Query: 582 RVGR 585
           R GR
Sbjct: 328 RTGR 331


>gi|307153455|ref|YP_003888839.1| primosomal protein N' [Cyanothece sp. PCC 7822]
 gi|306983683|gb|ADN15564.1| primosomal protein N' [Cyanothece sp. PCC 7822]
          Length = 835

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 14/143 (9%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           P +P ++      D LQ +S  N   ++L  G  GSGKT V L A+A  +E+G   +++ 
Sbjct: 290 PLTPAQA------DALQVISHLNGFAQVLLHGVTGSGKTEVYLQAIAPLLESGKSVLVLV 343

Query: 329 P-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P IG+  Q    F  ++ +     V +    +    R     ++  G   ++IGT +   
Sbjct: 344 PEIGLTPQLTDRFRARFGER----VYVYHSGLSDGERYDTWRQMLMGTPQVLIGTRSAIF 399

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
             +    L L+++DE+H    +Q
Sbjct: 400 APLS--NLGLIVLDEEHDSSFKQ 420


>gi|38564733|gb|AAR23806.1| initiation factor eIF4A-15 [Helianthus annuus]
          Length = 413

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 124/314 (39%), Gaps = 47/314 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYNVVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT----------HALFQDSIQYYKLILVIVDEQ 403
              G        +  +RI     H+++GT           +L  D+I+ +  +L   DE 
Sbjct: 141 ACVGGTSV----REDQRILSAGVHVVVGTPGRVFDMLRRQSLRSDNIKMF--VLDEADEM 194

Query: 404 HRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              G + ++        +   V + +AT  P  L +T        K   KP        V
Sbjct: 195 LSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR-------KFMNKP--------V 239

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLH 511
            I + R +  +E +K      +K  W    + +  E+          N R  V+      
Sbjct: 240 RILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 299

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +    
Sbjct: 300 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 359

Query: 572 GLAQLHQLRGRVGR 585
               LH++ GR GR
Sbjct: 360 PENYLHRI-GRSGR 372


>gi|73538374|ref|YP_298741.1| ATP-dependent DNA helicase RecQ [Ralstonia eutropha JMP134]
 gi|72121711|gb|AAZ63897.1| ATP-dependent DNA helicase RecQ [Ralstonia eutropha JMP134]
          Length = 556

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG-LAQ 575
           ++A+ HG+ + + +    D+F  G   +++AT    +GID  D   I+  +A+  G L  
Sbjct: 265 NVALYHGQRTAVQRRDAQDAFMAGRADVMVATNAFGMGIDKPDVRFIV--HAQCPGSLDA 322

Query: 576 LHQLRGRVGRGEEISSCILLY 596
            +Q  GR GR   ++ C LL+
Sbjct: 323 YYQESGRAGRDGGLARCTLLF 343


>gi|172058935|ref|YP_001815395.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171991456|gb|ACB62378.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 410

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 141/345 (40%), Gaps = 41/345 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT  QE AI  +L       R L I +   G+GKTL  L+ +   ++      QA+I+AP
Sbjct: 25  PTPIQEQAIPHLL-----AGRDL-IGKAQTGTGKTLAFLLPILEQIDLESKTVQALIVAP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA+Q  +   K  +N + I  +           K ++R+      IIIGT     D 
Sbjct: 79  TRELARQIADETHKLIRNMEDIRALAVYGGQDVF--KQIQRLGR-MPQIIIGTPGRILDH 135

Query: 389 ----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL-LMTATPIPRTLVLTSLGDI 443
               ++   +L  +++DE          ++ Q    P +  ++ A P+ R  V+ S    
Sbjct: 136 VGRGTLDLSELKTLVLDEAD--------QMLQIGFLPEIEDIIAAAPVDRQFVMLSATMP 187

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---F 500
           +  +   K   R PI+  +       + IE+  V  ++ +K   +   ++E +      F
Sbjct: 188 EKVEQLAKTYLRDPIEVQVEAEKVTVDAIEQFVVETTDRRKQATLRTMLDEMRPYAAIIF 247

Query: 501 RSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                R + L+E           +HG ++   +E  M  F  G    LIAT V   G+DV
Sbjct: 248 CRTQRRVSKLNEELQMQGYPTDELHGGLTQGKREKAMAKFYQGKTPFLIATDVASRGLDV 307

Query: 558 VDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              + +    + ++AE +    +H++ GR GR       I +  P
Sbjct: 308 TGVTHVFNYDLPDDAESY----VHRI-GRTGRAGNDGVAISIVTP 347


>gi|320164192|gb|EFW41091.1| nucleolar RNA helicase 2 [Capsaspora owczarzaki ATCC 30864]
          Length = 793

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 500 FRSVVERFN--SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           F S  E  N  +L+        ++HG ++   +E  +  F++G  + L+AT V   G+D+
Sbjct: 450 FASTKEEANDLALNGRIAGETHVLHGDIAQKQREITLAGFRSGKFRCLVATDVAARGLDI 509

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +  ++I           +H+  GR GR  +  +CIL Y P
Sbjct: 510 PEVELVIQTEPPIDVETYIHRA-GRTGRAGKSGTCILFYKP 549


>gi|315426403|dbj|BAJ48042.1| CRISPR-associated helicase Cas3 [Candidatus Caldiarchaeum
           subterraneum]
 gi|315426415|dbj|BAJ48053.1| CRISPR-associated helicase Cas3 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 537

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 52/85 (61%), Gaps = 5/85 (5%)

Query: 502 SVVERFNSLHEHFTSSIAII-HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           + VE+   L+   + + A++ HGR++  D+++V+D+ KNG   ++++T V+E G++ + +
Sbjct: 278 NTVEKAKHLYRLLSDADAVLLHGRLTKKDRQNVLDNLKNGKKWVVVSTQVVEAGVN-ISS 336

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGR 585
            ++I E A     + L Q  GRV R
Sbjct: 337 ELMITELAP---ASSLVQRAGRVAR 358


>gi|307708278|ref|ZP_07644745.1| primosomal protein N' [Streptococcus mitis NCTC 12261]
 gi|307615724|gb|EFN94930.1| primosomal protein N' [Streptococcus mitis NCTC 12261]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++ +     V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGEK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVIIIDEEHEATYKQ 393


>gi|301169448|emb|CBW29048.1| ATP-dependent DNA helicase [Haemophilus influenzae 10810]
          Length = 619

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 99/243 (40%), Gaps = 50/243 (20%)

Query: 380 IGTHALFQDSIQYYKLILVIVDEQH---RFGVQQRLKLTQ----KATAPH--VLLMTATP 430
           + T++ FQ  I Y K+  + +DE H   ++G   R + TQ    KA+ P   ++ +TAT 
Sbjct: 129 VMTNSFFQ-LISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATA 187

Query: 431 -------IPRTLVLTSL----GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
                  I R L L +L    G  D      +P  R  ++    P+ ++        V+ 
Sbjct: 188 DYATQQDILRHLNLKNLHKYIGSFD------RPNIRYTLEEKYKPMEQLTRF-----VLA 236

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +GK     C         N R+ VER      +   S A  H  M    +E V   F+ 
Sbjct: 237 QKGKSGIIYC---------NSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQR 287

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILL 595
              ++++AT    +GI+  +   +      HF L +     +Q  GR GR +  +  +L 
Sbjct: 288 DNVQVVVATIAFGMGINKSNVRFV-----AHFDLPRSIESYYQETGRAGRDDLPAEAVLF 342

Query: 596 YHP 598
           Y P
Sbjct: 343 YEP 345


>gi|298675601|ref|YP_003727351.1| ERCC4 domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298288589|gb|ADI74555.1| ERCC4 domain protein [Methanohalobium evestigatum Z-7303]
          Length = 759

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 16/140 (11%)

Query: 302 VGSGKTLVALIAMAAAVEA-GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G GKT VAL+ +A+ +E  GG+A++++P   L +QH  F+K      +  ++  TGN  
Sbjct: 39  TGLGKTTVALLVIASRLEKFGGRALVLSPTKPLVEQHAHFLKSTLAIPENNIQAFTGNTS 98

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-FGVQQRLKL 414
              R +  E      + +I+ T  + ++ +   ++ L     +  DE HR  G      +
Sbjct: 99  PEKRAELWE-----NSSVIVSTPQVIENDLLAKRIDLNDVSHITFDEAHRAVGNYSYTYI 153

Query: 415 TQK----ATAPHVLLMTATP 430
            +K       P  L +TA+P
Sbjct: 154 AEKYYENGKNPLCLGITASP 173


>gi|225464928|ref|XP_002275011.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 412

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 143/336 (42%), Gaps = 49/336 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  Q+ A+  I+Q          I Q   G+GKT +  + +   V+      QA+I++P
Sbjct: 62  PSAIQQRAVLPIIQGRDV------IAQAQSGTGKTSMIALTVCQMVDTSNREVQALILSP 115

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I        I      G        + LE   +G  HI+ GT     D 
Sbjct: 116 TRELASQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLE---YG-VHIVSGTPGRVCDM 171

Query: 390 IQYYKL-----ILVIVDEQHRF---GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           I+   L      L+++DE       G + ++    +   P   V+L++AT +P       
Sbjct: 172 IKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISAT-LPN------ 224

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW----ICPQIEE- 494
               +I +IT K     P++   I + R +  +E +K      ++  W    +C   +  
Sbjct: 225 ----EILEITNKFM-TDPVR---ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 276

Query: 495 --KKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
              +   F +   + + L E   S   +++ +HG M   +++++M  F++GT ++LI T 
Sbjct: 277 TITQAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRSGTTRVLITTD 336

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           V   G+DV   S++I  +  +     +H++ GR GR
Sbjct: 337 VWARGLDVQQVSLVINYDLPNNRELYIHRI-GRSGR 371


>gi|156040647|ref|XP_001587310.1| hypothetical protein SS1G_12340 [Sclerotinia sclerotiorum 1980]
 gi|154696396|gb|EDN96134.1| hypothetical protein SS1G_12340 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 721

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 12/108 (11%)

Query: 500 FRSVVERFNSLHEHF----------TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           F   + R  +LH             ++ IA++H  +SD  ++ VM  F+NG   +LI T 
Sbjct: 486 FTQTISRAIALHAELLYDIPAEAGGSTRIAVLHSDLSDSVRDQVMTRFRNGEIWILITTD 545

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLY 596
           ++  G+D    + ++  +  + G A +H++ GR GR G +    +  Y
Sbjct: 546 ILSRGVDFKGINGVVNYDVPNSGAAYIHRV-GRTGRAGRDGGIAVTFY 592


>gi|145637733|ref|ZP_01793385.1| organic solvent tolerance protein [Haemophilus influenzae PittHH]
 gi|145269082|gb|EDK09033.1| organic solvent tolerance protein [Haemophilus influenzae PittHH]
          Length = 619

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 99/243 (40%), Gaps = 50/243 (20%)

Query: 380 IGTHALFQDSIQYYKLILVIVDEQH---RFGVQQRLKLTQ----KATAPH--VLLMTATP 430
           + T++ FQ  I Y K+  + +DE H   ++G   R + TQ    KA+ P   ++ +TAT 
Sbjct: 129 VMTNSFFQ-LISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATA 187

Query: 431 -------IPRTLVLTSL----GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
                  I R L L +L    G  D      +P  R  ++    P+ ++        V+ 
Sbjct: 188 DYATQQDILRHLNLKNLHKYIGSFD------RPNIRYTLEEKYKPMEQLTRF-----VLA 236

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +GK     C         N R+ VER      +   S A  H  M    +E V   F+ 
Sbjct: 237 QKGKSGIIYC---------NSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQR 287

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILL 595
              ++++AT    +GI+  +   +      HF L +     +Q  GR GR +  +  +L 
Sbjct: 288 DNVQVVVATIAFGMGINKSNVRFV-----AHFDLPRSIESYYQETGRAGRDDLPAEAVLF 342

Query: 596 YHP 598
           Y P
Sbjct: 343 YEP 345


>gi|238854074|ref|ZP_04644424.1| superfamily II DNA/RNA helicase required for DNA uptake
           [Lactobacillus gasseri 202-4]
 gi|238833308|gb|EEQ25595.1| superfamily II DNA/RNA helicase required for DNA uptake
           [Lactobacillus gasseri 202-4]
          Length = 422

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 149/363 (41%), Gaps = 52/363 (14%)

Query: 256 NVEGKIAQKILRNIPF--SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           NVE     KIL  + +  + T+ QE   ++++   S K R   ++    G+GKT +    
Sbjct: 69  NVENGNYPKILTPLSWRETLTEQQELISRELVN--SFKERRNHLIHAVTGAGKTEMLFKV 126

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A++ G +  I  P   +  + +   +   +N +I          + H R+  E    
Sbjct: 127 VEEALKGGFRIAIATPRIDVVDELFPRFQAAFENVKI---------GKYHGREHHE--VR 175

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV------LLMT 427
            +  +I  TH L +    Y    L+++DE   F   +  K+   A    V        +T
Sbjct: 176 DEQFVICTTHQLLK---FYQAFDLIVIDEVDSFPFYEN-KMLHFAAENAVKKVGCTFFLT 231

Query: 428 ATPIPRTLVLTSLGDIDISKITEK--------PAGRKPIKTVIIPINRID-EVIERLKVV 478
           ATP  + L       I+ S +  +        P  +   K+ I    ++   +I+++K +
Sbjct: 232 ATPDSKLLRQAKNKTINYSLLKRRFHQGLLPVPKEKYFFKSYISNKGKVHPTLIKQIKKI 291

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI----AIIHGRMSDIDKESVM 534
           L   K      P+I+E              S +E + SSI     I+     D D+++ +
Sbjct: 292 LDMKKPLLIFVPRIKEL-------------STYEKYLSSIFKTSKIVSVYAGDKDRQAKV 338

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH-FGLAQLHQLRGRVGRGEEISSCI 593
            SF+     +L+ TT++E G+      +I+I   +  +    L Q+ GRVGR  +    +
Sbjct: 339 ASFRRRETDILLTTTILERGVTFKHVQVIVIAADDPIYNTPSLVQIAGRVGRSADDRDGL 398

Query: 594 LLY 596
           +L+
Sbjct: 399 VLF 401


>gi|82523756|emb|CAI78756.1| probable ATP-dependent RNA helicase [uncultured gamma
           proteobacterium]
          Length = 505

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 138/325 (42%), Gaps = 44/325 (13%)

Query: 297 ILQGDVGSGKTLVALIAMA-------AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           ++  + GSGKTL  LI +A       A    G QA+I+ P   LA+Q  + I++    + 
Sbjct: 99  LVSAETGSGKTLAYLIPLAQKILAAPAGTTQGTQALILVPTRELARQVLKHIRQLLAKSP 158

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQH 404
           +  + ITG     +++  L +       II+GT     +     S    +L  +++DE  
Sbjct: 159 LKAQAITGGADFKYQKSQLRQ----DPEIIVGTPGRLLEHCRKLSTDLGRLQTLVLDEAD 214

Query: 405 R---FGVQQR-LKLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           R    G ++  L +     A   +LL++AT       L+  G  DI+           + 
Sbjct: 215 RMLDMGFREDVLAIADFCPASRQMLLLSAT-------LSHRGVGDIAATLRLNPQSIAVG 267

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV---------ERFNSL 510
            V  P + I       +++L++  + +     +   ++ +++ V+          R + L
Sbjct: 268 QVRQPHSNISH-----QLILAD-NQTHKDQLLLALLQQGDYQRVLVFGNKRDTAARLHQL 321

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            +      A +HG ++  +++ VM  F+ G   ++ A+ V   G+D+    ++I  +  +
Sbjct: 322 TQGQRLRSACLHGELTTEERKQVMHRFQEGKVNIVCASDVAARGLDIQGIDLVINYDIPY 381

Query: 571 FGLAQLHQLRGRVGRGEEISSCILL 595
            G   LH+  GR GR  +    I L
Sbjct: 382 SGDNYLHRT-GRTGRAGQKGLAISL 405


>gi|332159458|ref|YP_004424737.1| ATP-dependent RNA helicase, putative [Pyrococcus sp. NA2]
 gi|331034921|gb|AEC52733.1| ATP-dependent RNA helicase, putative [Pyrococcus sp. NA2]
          Length = 641

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 117/255 (45%), Gaps = 47/255 (18%)

Query: 372 AHGQAHIIIGTHALFQDSIQYY-KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           A  ++ ++     ++QD   Y  +L+ ++VD            +  KA  P V++M+AT 
Sbjct: 155 AIAESLVVFDEVHMYQDESMYMPRLLSLVVD------------ILAKANVP-VVIMSAT- 200

Query: 431 IP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           +P   R ++  +   I++    E    R  +   II  + ++ V+E +K VL+EGKK   
Sbjct: 201 LPSKLRDMIAKNAKTINVDPSDEHKPSRGEVDVEIIEGDVVN-VLEEIKRVLNEGKKVLV 259

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-----SIAIIHGRMSDIDKESVMDSFKNGTC 542
           +         +     +E +  L E   +      I +IH R +  D++    + +  + 
Sbjct: 260 V--------HNTVSRAIETYEFLKEELKNELEDPDILLIHSRFTLEDRKKKEKAIE--SA 309

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-----GEEISSCILLYH 597
           +L+++T VIE G+D+ +  +++ +      +A L  +  R+GR     GE     ILL  
Sbjct: 310 RLIVSTQVIEAGLDLPNVGLVVTD------IAPLDAIIQRIGRCARRTGERGKGIILL-- 361

Query: 598 PPLSKNSYTRLSVLK 612
           P + K+  + + +++
Sbjct: 362 PIIKKDDISSMRIVR 376


>gi|322391003|ref|ZP_08064508.1| primosome assembly protein PriA [Streptococcus parasanguinis ATCC
           903]
 gi|321142307|gb|EFX37780.1| primosome assembly protein PriA [Streptococcus parasanguinis ATCC
           903]
          Length = 802

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 120/275 (43%), Gaps = 34/275 (12%)

Query: 211 NPRKAKDFEWTSPARERLAYDELL---AGQIALLLMRKQFKKEIGIPINVEGKIA---QK 264
           N    K+ + +  A++RLA  E L    G+  L  + + F +E+      +G +    ++
Sbjct: 188 NQEGLKELQPSGRAKKRLALKERLLLEQGEQPLAGLYQDFSREVVAYFIEQGVLEITERE 247

Query: 265 ILRNIPFSPTKSQESAI-------KDILQDMSQKNRMLR--ILQGDVGSGKTLVALIAMA 315
           + R   +   K Q  A+       K +   +SQ  +  +  +L+G  GSGKT V L  + 
Sbjct: 248 VNRAAAYYEGKEQTQALLLNSEQAKAVETVVSQIGKTSKPFLLEGVTGSGKTEVYLQIIQ 307

Query: 316 AAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             +  G  A+++ P I +  Q    FI ++ Q     V I+   +    +     ++  G
Sbjct: 308 EVLNKGKTAIMLVPEISLTPQMTDRFISRFGQE----VAILHSGLSNGEKYDQWRKVERG 363

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVL 424
           +A +++G  +     ++   +  +I+DE+H          R+  ++   L  +     +L
Sbjct: 364 EAKVVVGARSAIFAPLK--NIGAIIIDEEHEASYKQDSNPRYHAREVAVLRAQYNQAVLL 421

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEK--PAGRKP 457
           L +ATP   +    + G  ++ ++T++  PA + P
Sbjct: 422 LGSATPSLESRARATKGVYELIRLTQRANPAAKIP 456


>gi|309808702|ref|ZP_07702592.1| putative ComF operon protein 1 [Lactobacillus iners LactinV 01V1-a]
 gi|308168063|gb|EFO70191.1| putative ComF operon protein 1 [Lactobacillus iners LactinV 01V1-a]
          Length = 429

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 139/346 (40%), Gaps = 53/346 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q     D+L  +  +N    ++    G+GKT +   A+   ++ G    +  P   +
Sbjct: 91  TDRQAKVSADLLHAL--QNNQDHLVHAVTGAGKTEMLFKAVEYFLQQGKYVALATPRLDV 148

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             + Y  + +   NT+I          + H + A +     +  II  TH L    ++YY
Sbjct: 149 VNELYPRMCRAFANTKI---------GKYHGKMAQD--PDNEPFIICTTHQL----LKYY 193

Query: 394 KLI-LVIVDEQHRFGVQQRLKL---TQKATAP--HVLLMTATPIPRTLVLTSLGDIDISK 447
           +   L+I+DE   F       L    + A  P      +TATP    L     G++  S 
Sbjct: 194 QAFDLIIIDEVDAFPYVNNPMLYYGAKNAIKPTGQTFYLTATPSKDMLTKVKNGEMGYSL 253

Query: 448 ITEKPAG------------RKPIK-TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + ++  G            RK I    + P      +I+ L  +++ GK      P+I E
Sbjct: 254 LQQRFHGGLLAVPEEYLFWRKYISGESLHPF-----LIKVLNEIINSGKPLLVFVPRIAE 308

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                    +  +  + +   S + I     SD +++  ++ F+N    +L+ TT++E G
Sbjct: 309 ---------LGLYQIILQKKYSQLVIASVHSSDKNRQQKVEQFRNREISILLTTTILERG 359

Query: 555 IDVVDASIIIIENAEH-FGLAQLHQLRGRVGRG--EEISSCILLYH 597
           +      +I+I   +  +  A L Q+ GRVGR   +++   I  YH
Sbjct: 360 VTFPGVQVIVIAADDAIYTTAGLVQIAGRVGRAATDQVGRVIFCYH 405


>gi|229845776|ref|ZP_04465888.1| frataxin-like protein [Haemophilus influenzae 7P49H1]
 gi|229810780|gb|EEP46497.1| frataxin-like protein [Haemophilus influenzae 7P49H1]
          Length = 619

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 99/243 (40%), Gaps = 50/243 (20%)

Query: 380 IGTHALFQDSIQYYKLILVIVDEQH---RFGVQQRLKLTQ----KATAPH--VLLMTATP 430
           + T++ FQ  I Y K+  + +DE H   ++G   R + TQ    KA+ P   ++ +TAT 
Sbjct: 129 VMTNSFFQ-LISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATA 187

Query: 431 -------IPRTLVLTSL----GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
                  I R L L +L    G  D      +P  R  ++    P+ ++        V+ 
Sbjct: 188 DYATQQDILRHLNLKNLHKYIGSFD------RPNIRYTLEEKYKPMEQLTRF-----VLA 236

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +GK     C         N R+ VER      +   S A  H  M    +E V   F+ 
Sbjct: 237 QKGKSGIIYC---------NSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQR 287

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILL 595
              ++++AT    +GI+  +   +      HF L +     +Q  GR GR +  +  +L 
Sbjct: 288 DNVQVVVATIAFGMGINKSNVRFV-----AHFDLPRSIESYYQETGRAGRDDLPAEAVLF 342

Query: 596 YHP 598
           Y P
Sbjct: 343 YEP 345


>gi|217976993|ref|YP_002361140.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
 gi|217502369|gb|ACK49778.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
          Length = 448

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 141/343 (41%), Gaps = 41/343 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT----LVALIAMAAAVE----AGGQA 324
           PT  Q  AI  +L        ++ I Q   G+GKT    L  L  +AA  +     G + 
Sbjct: 25  PTPIQAQAIPHVLTGRD----LVGIAQ--TGTGKTAAFALPILHQLAANPQQPPRGGARV 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q  E  +      Q+ V ++ G +P   + +AL+R       +++ T  
Sbjct: 79  LVLSPTRELASQIAESFRSLGSEMQLSVAVVFGGVPHGAQIRALQR----GLDVLVATPG 134

Query: 385 LFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D +        K    ++DE     V Q L L     A H ++ T     + L  ++
Sbjct: 135 RLVDHLDSGVAHLGKTEFFVLDE-----VDQMLDLG-FVKAIHRIVKTLPQRRQNLFFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I+K+      + P +  + P+ +  + +E+  + +   +K   +   + + K + 
Sbjct: 189 TMPTEIAKLAADLL-KNPAQVSVTPVAKTADRVEQQVLFVETHRKRDILVDLLADAKMAR 247

Query: 500 ---FRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F       + + +H      S A IHG  S   +E  + SF+ G  + L+AT +   
Sbjct: 248 TIIFTRTKRGADKVAQHLEVCGVSAAAIHGNKSQSQRERSLASFRAGRVRALVATDIAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           GIDV   + ++  +      A +H++ GR  R    G  IS C
Sbjct: 308 GIDVDGVTHVVNFDLPEVPEAYVHRI-GRTARAGAEGVAISLC 349


>gi|82703444|ref|YP_413010.1| primosomal protein N' [Nitrosospira multiformis ATCC 25196]
 gi|82411509|gb|ABB75618.1| replication restart DNA helicase PriA [Nitrosospira multiformis
           ATCC 25196]
          Length = 734

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 91/405 (22%), Positives = 157/405 (38%), Gaps = 108/405 (26%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGI 332
           T +Q++AI  I+  M + +  L  L G  GSGKT + L  ++  +    Q +++ P I +
Sbjct: 205 TPAQKNAIDAIVPKMGEFHTWL--LHGVTGSGKTEIYLQLISLLLRQARQTLVLVPEINL 262

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQ 391
             Q    F  ++      +V + +G  P   R +   +  HG+A II+GT  A+F     
Sbjct: 263 TPQLELIFRARFPGVR--LVSLHSGLNP-TERAEGWVQAQHGEAEIILGTRLAVF---TP 316

Query: 392 YYKLILVIVDEQHRFGVQQRLKL-----------TQKATAPHVLLMTATP---------- 430
             +L ++IVDE+H    +Q+  L            ++A  P ++L +ATP          
Sbjct: 317 LPRLGMIIVDEEHDLSFKQQEGLRYSARDVAVFRAKRAGIP-IVLGSATPSLETYYNAIT 375

Query: 431 -----------IPRTLVLTSLGDIDISKITEKPAGRKPI-----------KTVIIPINR- 467
                       P    L ++  IDI KI  +     P+           +  ++ INR 
Sbjct: 376 GRYLLLRLPSRAPDNASLPTVQYIDIGKIKTQEGFSPPVIAALEKGLASNQQSLVFINRR 435

Query: 468 ----------------IDEVIERLKVVLSE--------GKKAYW--ICPQIEEKKESNFR 501
                                 RL V L E        G +A +  +CP+   +  + F 
Sbjct: 436 GYAPILLCRACGWTALCHRCSSRLVVHLREKKLRCHHCGHQAEFPSLCPECGNQDIAPFG 495

Query: 502 SVVERFN-SLHEHFTSSIAIIHGRMSDIDKES---------VMDSFKNGTCKLLIATTVI 551
              +R   +L   F  +      R++ ID++S         ++   +     +L+ T ++
Sbjct: 496 HGTQRIEAALTRLFPDA------RIARIDRDSTRRKDSWQRILKDIREQRVDILVGTQIL 549

Query: 552 EVGIDVVDASIIIIEN-----------AEHFGLAQLHQLRGRVGR 585
             G D  + S++ I N           A     AQL Q+ GR GR
Sbjct: 550 AKGHDFPNLSLVSILNSDASLFSTDFRASERLFAQLMQVAGRAGR 594


>gi|41408619|ref|NP_961455.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41396977|gb|AAS04838.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 566

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 129/316 (40%), Gaps = 35/316 (11%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITG 357
            G+GKT    I + + ++A     QA+++AP   LA Q  E   +Y  +  +I V  I G
Sbjct: 59  TGTGKTAAFAIPILSKIDAASTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYG 118

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQ 409
               A +   L+R     AH+++GT     D ++   L        +L   DE    G  
Sbjct: 119 GSSYAVQLAGLKR----GAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFA 174

Query: 410 QRLK--LTQKATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           + +   L++      V L +AT  P  R L    L D        K    + I    I +
Sbjct: 175 EEVDRILSETPEYKQVALFSATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQV 234

Query: 466 ---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
               ++D +   L+V   E    +    Q  E+       V ER  +    F  S A I+
Sbjct: 235 AGPRKMDALTRVLEVEPFEAMIVFVRTKQATEE-------VAERLRA--RGF--SAAAIN 283

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G +    +E  + + K+G   +L+AT V   G+DV   S ++  +  H   + +H++ GR
Sbjct: 284 GDIPQGQRERTVAALKDGGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRI-GR 342

Query: 583 VGRGEEISSCILLYHP 598
            GR     + +L   P
Sbjct: 343 TGRAGRSGTALLFVSP 358


>gi|330984041|gb|EGH82144.1| ATP-dependent DNA helicase, RecQ family protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 678

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            V+    +H H   S       HG++S   K S+ + F  G  ++L++T+   +G+D  D
Sbjct: 246 TVKEVERIHAHLLGSGIKAGKYHGKLSPEMKSSIQEDFIAGKTQILVSTSAFGMGVDKAD 305

Query: 560 ASIIIIENAEHFG-LAQLHQLRGRVGRGEEISSCILLYHP 598
             ++I  +A+  G L   +Q  GR GR  + +  IL Y+P
Sbjct: 306 IRVVI--HAQMPGSLEAWYQEAGRAGRDGKPAKAILFYNP 343


>gi|313245292|emb|CBY40067.1| unnamed protein product [Oikopleura dioica]
          Length = 449

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 113/280 (40%), Gaps = 39/280 (13%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  L+     + A        G  AV++ P   LAQQ  +  K + +++ I   
Sbjct: 152 TGSGKTLAFLLPSMLHIRAQEPIRRGDGPIAVVLLPTRELAQQVEQVSKDFVESSDIYTT 211

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G  P+  + + LE+       I+I T     D ++  K  L     +++DE  R   
Sbjct: 212 CVFGGAPKGPQIRDLEK----GVEIVIATPGRLLDFLEAGKTNLKRCTYLVLDEADRMLD 267

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKTV 461
             F  Q R  + Q      +L+ +AT +     L    LGD  I            I + 
Sbjct: 268 MGFEPQIRKIIDQIRPDRQLLMYSATWLKEVQALADDFLGDNYIHAT---------IGST 318

Query: 462 IIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--FRSVVERFNSLH---EHFT 515
            +  N RI ++++       + K    I   +EE++     F     R + L    +   
Sbjct: 319 KLSCNKRILQIVDICDQYEKDEKLMKLISHLMEERESKTIVFTETKRRADELTYKMKRLR 378

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              A IHG  S  +++ V+  F++G   +LIAT V   G+
Sbjct: 379 WEAAAIHGDKSQSERDHVLKRFRSGRIPILIATDVASRGL 418


>gi|313892323|ref|ZP_07825915.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
           UPII 345-E]
 gi|313119182|gb|EFR42382.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
           UPII 345-E]
          Length = 491

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 129/316 (40%), Gaps = 50/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I +   ++    G QA++++P   LA Q  E I    Q   I   
Sbjct: 44  IGQAQTGTGKTAAFGIPILQRIDTSKPGPQAIVLSPTRELAIQSAEEINHLAQYMNIKTI 103

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHR 405
            I G      + +AL++    + +II+ T     D ++   + L  V        DE   
Sbjct: 104 PIYGGQDIERQFRALKK----KPNIIVATPGRLMDHMKRKTIDLSNVQIAVLDEGDEMVD 159

Query: 406 FGVQQRLKLTQKATAP--HVLLMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G    ++    AT      L  +AT P P R L  + L + +I KI          K  
Sbjct: 160 MGFIDDIRTIMAATPKERQTLFFSATMPAPIRELANSFLNEPEIVKI----------KAA 209

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---NFRSVVERFNSLHEHFTS-- 516
            + I+    +IE+  + L + +K   +C  ++ +       F     R + + E      
Sbjct: 210 TVTID----LIEQEYIELPDRQKFDALCRLLDMQSPELAIVFVRTKRRADEVTEALKKRA 265

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            S   +HG +S   ++SV+  FK GT   L+AT V   G+D+   + +      +F + Q
Sbjct: 266 YSAEGLHGDLSQQKRDSVIRQFKEGTIDFLVATDVAARGLDISGVTHVY-----NFDMPQ 320

Query: 576 -----LHQLRGRVGRG 586
                +H++ GR GR 
Sbjct: 321 DPEIYVHRV-GRTGRA 335


>gi|229085106|ref|ZP_04217357.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-44]
 gi|228698231|gb|EEL50965.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-44]
          Length = 389

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 152/343 (44%), Gaps = 42/343 (12%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           T+ Q+ AI  IL  QD+        I +   G+GKTL  L+ +   +       Q VI+A
Sbjct: 22  TEIQKQAIPTILEGQDV--------IAESPTGTGKTLAYLLPLLHKINPEVKQPQVVILA 73

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L  Q +E ++K+T  T I    + G    A  ++ +E++      +I+G+     +
Sbjct: 74  PTRELVMQIHEEVQKFTAGTDISGASLIGG---ADIKRQVEKLKK-HPKVIVGSPGRILE 129

Query: 389 SIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            I+  KL +     ++ DE  +  V+Q++       A H ++  AT   R LV  S    
Sbjct: 130 LIRMKKLKMHEVKTIVFDEFDQI-VKQKM-----VDAVHDVI-KATMRDRQLVFFS---A 179

Query: 444 DISKITEKPAGRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWI--CPQIEEKKESN 499
            ++K  E+ A    ++  ++ + R +   ++E   +V    +K  ++     I   K   
Sbjct: 180 TMTKDAEEVARDFAVEPQLVRVKRTETKSLVEHTYIVCERREKNDYVRRIMHIGNVKAVA 239

Query: 500 FRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F +   R + + E         + +H   S  ++E+ M +F+ G  ++L+AT +   G+D
Sbjct: 240 FLNDPYRLDEIAEKLRYRKMKASALHAEASKQEREATMRAFRQGKLEILLATDIAARGLD 299

Query: 557 VVDAS-IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + D + +I +E  +   L Q     GR GR  +  + + L  P
Sbjct: 300 IDDLTHVIHLELPD--TLDQYIHRSGRTGRMGKEGTVVSLVTP 340


>gi|229100254|ref|ZP_04231145.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29]
 gi|229115941|ref|ZP_04245337.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3]
 gi|228667530|gb|EEL22976.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3]
 gi|228683149|gb|EEL37136.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29]
          Length = 450

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|224060117|ref|XP_002300045.1| predicted protein [Populus trichocarpa]
 gi|222847303|gb|EEE84850.1| predicted protein [Populus trichocarpa]
          Length = 791

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 129/311 (41%), Gaps = 46/311 (14%)

Query: 302 VGSGKTLVALIA-------MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI               G   ++++P   LA Q      K+ ++++     
Sbjct: 211 TGSGKTLGYLIPGFIHLKRSCNDPRLGPTVLVLSPTRELATQIQVEAVKFGKSSRFSCTC 270

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF--- 406
           + G  P+  + K L+R     A I++ T     D ++  ++ L     +++DE  R    
Sbjct: 271 LYGGAPKGPQLKELDR----GADIVVATPGRLNDILEMRRVSLSQVSYLVLDEADRMLDM 326

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           G + +++           ++   P  R TL+ T+    ++ KI    A    +  V + I
Sbjct: 327 GFEPQIRK----------IVKEVPARRQTLMYTATWPKEVRKI----AADLLVNPVQVNI 372

Query: 466 NRIDEVIERLKVV----LSEGKKAYWICPQIEEKKESN-----FRSVVERFNSLHEHFTS 516
             +DE++    +     L    + +    QI   +ES      F S  +  + L  + T 
Sbjct: 373 GNVDELVANKSITQYVELLAPLEKHRRLEQILRSQESGSKIIIFCSTKKMCDQLSRNLTR 432

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               A IHG  S  +++ V+  F+ G   +L+AT V   G+D+ D  ++I  +       
Sbjct: 433 QFGAAAIHGDKSQSERDYVLSQFRTGRSPILVATDVAARGLDIKDIRVVINYDFPTGVED 492

Query: 575 QLHQLRGRVGR 585
            +H++ GR GR
Sbjct: 493 YVHRI-GRTGR 502


>gi|190348962|gb|EDK41523.2| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 666

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 119/300 (39%), Gaps = 49/300 (16%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A++MAP   L  Q +E  KK++  + +   ++ G      + + L+R       +++ T 
Sbjct: 284 ALVMAPTRELVSQIFEEAKKFSYRSWVRPCVVYGGADIGTQIRNLDR----GCDLLVATP 339

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF-------------------GVQQRLKLTQKAT 419
              +D ++  ++ L     +++DE  R                    GV+ R  L   AT
Sbjct: 340 GRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVESRQTLMFSAT 399

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDIS--KITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            P  + M A    +  +  S+G +  +   IT+K           +     DE    L  
Sbjct: 400 FPRDIQMLARDFLKDYIFLSVGRVGSTSENITQK-----------VLYVEDDEKKSVLLD 448

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           +LS       I     ++   N          L++    + AI HG  S  ++E  + +F
Sbjct: 449 LLSANDNGLTIIFTETKRMADNLADF------LYDQGFPATAI-HGDRSQYEREKALAAF 501

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+GT  +L+AT V   G+D+ + S ++  +        +H++ GR GR   +      ++
Sbjct: 502 KSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRI-GRTGRAGNVGIATAFFN 560


>gi|189485761|ref|YP_001956702.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287720|dbj|BAG14241.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 543

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 127/313 (40%), Gaps = 43/313 (13%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK---KYTQNTQI 350
           I Q   G+GKT    + ++    A     Q+VI+ P   LA Q  E +K   KY +   I
Sbjct: 45  IGQSQTGTGKTAAFGIPVLEKTNAKNKAVQSVILCPTRELAIQVAEELKLFSKYKKGINI 104

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR 405
           +   + G  P   +  AL +     A I+IGT     D ++   L L     VI+DE   
Sbjct: 105 VP--VYGGQPIQRQMIALSK----GAQIVIGTPGRVIDHLERRTLKLDTASIVILDEADE 158

Query: 406 F---GVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI-K 459
               G +  ++L  K+       +  +AT     L LT        K    P   K + +
Sbjct: 159 MLDMGFRDDIELILKSIPEGRQTVFFSATMPKEFLSLTK-------KYQHSPETIKVVSE 211

Query: 460 TVIIPINRIDEVIERLKVVLSEGKK--AYWICPQIEEKKES----NFRSVVERFNSLHEH 513
            + +P       IE+    + E +K  A   C  + + K S    N +  V+   S  + 
Sbjct: 212 KLTVP------SIEQYYFDIKEHQKLEALTRCLDMYDPKLSLVFCNTKKRVDEVTSSLQA 265

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  IHG M+   +  VM  F+NG+ +LLIAT V   GIDV    ++   +      
Sbjct: 266 RGYYADAIHGDMNQSQRNRVMSKFRNGSIELLIATDVAARGIDVDGIDMVFNFDVPKDDE 325

Query: 574 AQLHQLRGRVGRG 586
             +H++ GR GR 
Sbjct: 326 DYVHRI-GRTGRA 337


>gi|123494887|ref|XP_001326616.1| ATP-dependent DNA helicase, RecQ family protein [Trichomonas
           vaginalis G3]
 gi|121909533|gb|EAY14393.1| ATP-dependent DNA helicase, RecQ family protein [Trichomonas
           vaginalis G3]
          Length = 1447

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF----G 572
           + A  HG+M + D++ V + + N   ++++AT    +GID  D   +I     H      
Sbjct: 611 NTAYYHGKMENADRKKVQEMWMNNQIRVIVATLAFGMGIDKPDVRYVI-----HMTMPRS 665

Query: 573 LAQLHQLRGRVGRGEEISSCILLY 596
           L   +Q  GR GR  + S C+L +
Sbjct: 666 LEAYYQESGRAGRDGKQSHCLLFF 689


>gi|312867114|ref|ZP_07727324.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
 gi|311097243|gb|EFQ55477.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
          Length = 536

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 137/337 (40%), Gaps = 42/337 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    +     ++      QA+++AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGLPTLEKIDVDNTVIQALVIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I+   L        IL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLDHIETLILDEADEMLN 157

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  + ++  +++       LL +AT +P      ++  I +  + E      P    I 
Sbjct: 158 MGFLEDIEAIISRVPETRQTLLFSAT-MPE-----AIKRIGVQFMKE------PEHVKIA 205

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--- 520
                 +++++  + + EG+K +    ++ + ++     V  R     +  T  + I   
Sbjct: 206 AKELTTDLVDQYYIRVKEGEK-FDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGF 264

Query: 521 ----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +
Sbjct: 265 RAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYV 324

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           H++ GR GR  +    I    P    N    L +++N
Sbjct: 325 HRI-GRTGRAGKTGQSITFVSP----NEMGYLQIIEN 356


>gi|240851270|ref|YP_002972673.1| primosome assembly protein PriA [Bartonella grahamii as4aup]
 gi|240268393|gb|ACS51981.1| primosome assembly protein PriA [Bartonella grahamii as4aup]
          Length = 735

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 17/145 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L G  GSGKT V   A+A A   G Q +I+ P   L QQ   F+ ++            
Sbjct: 226 LLDGVTGSGKTEVYFEAVAQAFRGGKQVLILLPEIALTQQ---FLDRFYARFGAAAAEWH 282

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL- 414
            ++    R +   +++ G+  ++ G   ALF   + +++L L++VDE+H    +Q  ++ 
Sbjct: 283 SDLTPRRRERVWRQVSEGRVRVVAGARSALF---LPFHELGLIVVDEEHDSAYKQEERIF 339

Query: 415 -------TQKATAPH--VLLMTATP 430
                    + +  H  V+L +ATP
Sbjct: 340 YHARDMAVARGSFEHFPVILSSATP 364


>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 513

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 160/372 (43%), Gaps = 53/372 (14%)

Query: 302 VGSGKT------LVALIAMAAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            G+GKT      L+ L+      +A   +A+++ P   LA Q  E ++ Y +N  +   +
Sbjct: 69  TGTGKTAGFTLPLLELLTRGNRAQAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAV 128

Query: 355 ITGNM---PQAHRRKALERIAHGQAHIIIGTHA----LF-QDSIQYYKLILVIVDEQHRF 406
           + G +   PQ      + ++  G   I++ T      LF Q ++ + +L ++I+DE  R 
Sbjct: 129 VFGGVGIGPQ------ISKLGKG-VDILVATPGRLLDLFNQRALNFNQLEVLILDEADRM 181

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                +   +K       ++   P  R  L+ ++    DI K+  K     P++  + P 
Sbjct: 182 LDMGFIHDIKK-------ILKVLPAKRQNLMFSATFSDDIRKLA-KGLVNNPVEISVTPR 233

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH---------EHFTS 516
           N   + +E+    + + +K   +   I   K+++++ V+    + H         E    
Sbjct: 234 NATAKTVEQYIYQVDQKQKTAALIHLI---KQNDWKQVLVFSRTKHGANRIAKNLEANDL 290

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           + A IHG  S   +   + +FK+G  ++L+AT +   GID+     ++  +  +     +
Sbjct: 291 TAAAIHGNKSQGARTKALANFKSGEVRVLVATDIAARGIDIDQLPNVVNFDLPNVPEDYV 350

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSK--NSYTRL---SVLKNTEDGF----LIAEEDLKQ 627
           H++ GR GR       + L     SK      RL    + +   +GF    ++AE DL +
Sbjct: 351 HRI-GRTGRAGADGQAVSLVSGDESKLLRDIERLIKQKIPRKEVEGFVPTQVVAETDLNE 409

Query: 628 RKEGEILGIKQS 639
           RK G+  G + +
Sbjct: 410 RKHGQNRGPRNA 421


>gi|15901568|ref|NP_346172.1| primosome assembly protein PriA [Streptococcus pneumoniae TIGR4]
 gi|111657687|ref|ZP_01408415.1| hypothetical protein SpneT_02001121 [Streptococcus pneumoniae
           TIGR4]
 gi|14973231|gb|AAK75812.1| primosomal protein N' [Streptococcus pneumoniae TIGR4]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|315918870|ref|ZP_07915110.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           sp. D2]
 gi|313692745|gb|EFS29580.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           sp. D2]
          Length = 286

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 11/105 (10%)

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N R  V+R + L      S    HG M   D+E  +  F+NG+C +LI+T +   G+D+
Sbjct: 83  CNHRDAVDRVHQLLADKKLSAERFHGGMEQPDRERALYKFRNGSCHVLISTDLAARGLDI 142

Query: 558 VDASIIIIENAEHFGL-----AQLHQLRGRVGRGEEISSCILLYH 597
            +   I+     H+ L     A  H+  GR  R +   +  L+ H
Sbjct: 143 PEVGHIV-----HYHLPVNEEAFTHR-NGRTARWDATGTSYLILH 181


>gi|289436030|ref|YP_003465902.1| ATP-dependent DNA helicase RecQ [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289172274|emb|CBH28820.1| ATP-dependent DNA helicase RecQ [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 591

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNF-----RSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            +VV  + K  Y +    + K ES       R  VER ++          + HG MSDI 
Sbjct: 208 FQVVKGQDKDKYLMDYLTKNKTESGIVYASTRKEVERLHTFLLKKGVEAGMYHGGMSDIA 267

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +    + F     ++++AT    +GI+  +   +I  N     +   +Q  GR GR    
Sbjct: 268 RRDWQEKFLYDDIRVIVATNAFGMGINKSNVRFVIHYNIPR-NIEAYYQEAGRAGRDGVP 326

Query: 590 SSCILLYHPPLSK 602
           S CILL+ P  S+
Sbjct: 327 SDCILLFSPQDSR 339


>gi|283769600|ref|ZP_06342496.1| primosomal protein N' [Bulleidia extructa W1219]
 gi|283103868|gb|EFC05254.1| primosomal protein N' [Bulleidia extructa W1219]
          Length = 694

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 17/153 (11%)

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNT 348
           Q+   + +L G  GSGKT V L     A+E G Q +I+ P IG+  Q      + + Q+ 
Sbjct: 209 QRKEGVHLLYGQTGSGKTEVYLHLAKKAIEEGKQVLILVPEIGLTPQMVNRVSRVFGQD- 267

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFG 407
              + +    + +  R +  + +  G+  +I+GT  A+F   + + KL L+++DE+H   
Sbjct: 268 ---LGMYHSGLNEQERYEQYQLVKQGRLKVIVGTRSAIF---LPFQKLGLIVLDEEHDSS 321

Query: 408 VQQRLK--------LTQKATAPHVLLMTATPIP 432
            +Q ++          ++A   H  L+  +  P
Sbjct: 322 YKQDVQPSYHCRDVAVERAGFHHCPLVLGSATP 354


>gi|253733085|ref|ZP_04867250.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728993|gb|EES97722.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 517

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 156/376 (41%), Gaps = 60/376 (15%)

Query: 249 KEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRIL-QGDVGSGK 306
           KE+GI  N       + L ++ F  PT  Q+ +I   LQ +        IL Q   G+GK
Sbjct: 16  KELGISDNT-----VQSLESMGFKEPTPIQKDSIPYALQGID-------ILGQAQTGTGK 63

Query: 307 TLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           T    I +   V  + G Q++I+AP   LA Q  E ++++++   + V  + G MP   +
Sbjct: 64  TGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQ 123

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQ 416
            KAL++       I++GT     D +          + LIL   DE    G    ++   
Sbjct: 124 IKALKK----GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIM 179

Query: 417 K---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
               A     +L +AT +P+ +         + +  + P   K IKT+   ++  D  IE
Sbjct: 180 DKIPAVQRQTMLFSAT-MPKAIQAL------VQQFMKSP---KIIKTMNNEMS--DPQIE 227

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-------AIIHGRMS 526
               ++ E +K +       +  +     V  R     +  TS++         +HG ++
Sbjct: 228 EFYTIVKELEK-FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDIT 286

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQLRGR 582
              +  V+  FKN    +L+AT V   G+D+   S +    I ++ E +     H++ GR
Sbjct: 287 QAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY----THRI-GR 341

Query: 583 VGRGEEISSCILLYHP 598
            GR  +    +   +P
Sbjct: 342 TGRAGKEGIAVTFVNP 357


>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
           DSM 20745]
          Length = 526

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 154/384 (40%), Gaps = 54/384 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT  Q  AI  +L       R L I Q   G+GKT    + +   ++  G   QA+++AP
Sbjct: 25  PTPIQREAIPLLL-----SGRDL-IAQAQTGTGKTAAFALPIIERLQPNGRRPQALVLAP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  +   +  +     V  + G  P   + +AL         +++GT     D 
Sbjct: 79  TRELAVQVAQTFHQLGRVRDTRVLAVYGGQPIERQLRALRH----PVEVVVGTPGRVMDH 134

Query: 390 IQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTS 439
           I+   L L     V++DE       G  + ++  L          L +AT   R   L  
Sbjct: 135 IRRETLDLSNVSTVVIDEADEMLDMGFIEDVEWILDHVPAERQTALFSATIPDRVAALAR 194

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVV-------LSEGKKAYWI 488
               D +++  +P      + V +P  +I+    EV++R KV        +     A   
Sbjct: 195 RYLRDPARVAVEP------ERVTVP--QIEQTYVEVVQRAKVEALTRILDMETPPSAIIF 246

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C     + +     + ++  SL      +   +HG +S + ++ VM  F++G  +LLIAT
Sbjct: 247 C-----RTKRGVDELTQQLQSLG----YAAEALHGDLSQVQRDRVMARFRSGQAELLIAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK--NSYT 606
            V   G+DV   + +I  +      + +H++ GR GR     + I L  P   +      
Sbjct: 298 DVAARGLDVEGITHVINYDIPGDPESYVHRI-GRTGRAGRAGAAITLVTPRERRLLREIE 356

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKE 630
           R + ++ T  G    EE   +++E
Sbjct: 357 RATGVRMTRRGVPTPEEVAARQRE 380


>gi|255566644|ref|XP_002524306.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223536397|gb|EEF38046.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 406

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 115/291 (39%), Gaps = 42/291 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++ G    QA+++AP   LAQQ    ++       + V 
Sbjct: 73  IQQAQSGTGKTATFCSGVLQQLDYGLVQCQALVLAPTRELAQQIDMVLRALGDYLDVKVH 132

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-------YYKL-ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++       Y K+ +L   DE   
Sbjct: 133 ACVGGTS----VREDQRILRAGVHVVVGTPGRVFDMLRRQSLPADYIKMFVLDEADEMLS 188

Query: 406 FGVQQRL-KLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++  + Q   A   V + +AT  P  L +T        K   KP        V I
Sbjct: 189 RGFKDQIYDIFQFLPAKVQVGVFSATMPPEALDITR-------KFMNKP--------VRI 233

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 234 LVKRDELTLEGIKQYYVHVDKDEWKLETLCDLYETLPIAQSVIFVNTRRKVDWLTDKMRS 293

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +++  HG M     + +M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 294 RDHTVSATHGDMDQNASDVIMREFRSGSSRVLIATDLLARGIDVQQVSLVI 344


>gi|149006595|ref|ZP_01830294.1| primosome assembly protein PriA [Streptococcus pneumoniae
           SP18-BS74]
 gi|147761893|gb|EDK68856.1| primosome assembly protein PriA [Streptococcus pneumoniae
           SP18-BS74]
 gi|332072910|gb|EGI83391.1| primosomal protein N [Streptococcus pneumoniae GA17545]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|116629417|ref|YP_814589.1| primosomal protein N' [Lactobacillus gasseri ATCC 33323]
 gi|311110933|ref|ZP_07712330.1| primosomal proteiN n' [Lactobacillus gasseri MV-22]
 gi|116094999|gb|ABJ60151.1| replication restart DNA helicase PriA [Lactobacillus gasseri ATCC
           33323]
 gi|311066087|gb|EFQ46427.1| primosomal proteiN n' [Lactobacillus gasseri MV-22]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 67/135 (49%), Gaps = 7/135 (5%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q  A+  I + + ++     +L+G  GSGKT V L A++ A+E    A+++ P I +  Q
Sbjct: 266 QTHALNSIGKSIQKREAKTFLLEGITGSGKTEVYLHAISIALEQKRNALMLVPEISLTPQ 325

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
              +  +++  N    V ++   + +  +     RI  G+A +++G  +     ++   +
Sbjct: 326 MVKQVKERFGDN----VAVLHSGLSEGEKYDEWRRIRRGEAQVVVGARSAIFAPLK--NI 379

Query: 396 ILVIVDEQHRFGVQQ 410
            L+++DE+H    +Q
Sbjct: 380 GLIVIDEEHESSYKQ 394


>gi|157131180|ref|XP_001662155.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108871623|gb|EAT35848.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 510

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 142/359 (39%), Gaps = 85/359 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P+K QE+A+  +L D  Q      I Q   G+GKT   ++AM + V+      Q + ++
Sbjct: 145 APSKIQETALPTLLADPPQN----MIAQSQSGTGKTAAFVLAMLSRVDPKKNYPQVICLS 200

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL--ERIAHGQA---HIIIGTH 383
           P   LA Q  E   K  +             P+   R A+  E +A G     HIIIGT 
Sbjct: 201 PTYELAIQTGEVAAKMAKFC-----------PEIKLRYAVRGEELAKGDKLTDHIIIGTP 249

Query: 384 ALFQD------SIQYYKLILVIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATPIPR 433
               D      S    K+ + ++DE        G Q +     K  +    +M       
Sbjct: 250 GKLMDWGIKYRSFDLKKITVFVLDEADVMIATQGHQDQCIRIHKQLSSRCQMM------- 302

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
               ++  + ++ +  E           I+P N I   + R +  L   K+ Y  C   +
Sbjct: 303 --FFSATYEREVMEFAE----------YIVP-NPIVIRLAREQESLDNIKQYYVKCRTQD 349

Query: 494 EKKE--SNFRSVVERFNSL---HEHFTSS------------IAIIHGRMSDIDKESVMDS 536
           EK +  SN   V+    ++   H   T+S            +A++ G ++   + +V+D 
Sbjct: 350 EKYQAISNIYGVITVGQAIIFCHTRKTASWLSVKMSQDGHSVAVLSGELTVEQRLAVLDR 409

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR----------GRVGR 585
           F+ G  K+LI T V+  GIDV   +I++     +F L    Q R          GR GR
Sbjct: 410 FRAGLEKVLITTNVLSRGIDVEQVTIVV-----NFDLPMDQQGRADCETYLHRIGRTGR 463


>gi|269104692|ref|ZP_06157388.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161332|gb|EEZ39829.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 430

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 109/283 (38%), Gaps = 39/283 (13%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   L +Q    IK YT+ T +    + G    A + K LE        I++ T
Sbjct: 76  RALILAPTRELVEQIANNIKDYTRYTDLTTVAVFGGRKIATQEKKLE----SGCDILVAT 131

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIP 432
                + ++   ++L     ++ DE  R     F    R  L+   + P ++L +AT   
Sbjct: 132 PGRLLEHLELQNVLLSNIEFLVFDEADRMLDMGFISAIRTILSNVNSTPQIMLFSAT--- 188

Query: 433 RTLVLTSLGDIDISKITEKPAG---RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                        S    K AG    KP +  + P N   E +  +   + E +K   + 
Sbjct: 189 ------------FSSQMNKLAGELLNKPKRISVTPENSTAETVAHVVYPVDEERKREMLS 236

Query: 490 PQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCK 543
             I +K       F +  E  N L E          + HG  +   +   +  FK G  +
Sbjct: 237 ELIGKKNWQQVLVFVNYKETANQLVEELELDGIKAVLCHGDKAQGARRRALKEFKEGKAR 296

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           +++AT V   G+D+     ++  +        +H++ GR GR 
Sbjct: 297 VMVATEVAARGLDIQGLPHVVNYDMPFLAEDYVHRI-GRTGRA 338


>gi|261211244|ref|ZP_05925533.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio sp. RC341]
 gi|260839745|gb|EEX66356.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio sp. RC341]
          Length = 734

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 18/199 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IG 331
           P  +QE AI  I    S +     +L G  GSGKT V L  +   +  G QA+++ P IG
Sbjct: 199 PKLNQEQAIA-IAAVNSHQGFGCFLLDGVTGSGKTEVYLNLITPVLARGEQALVLVPEIG 257

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +  Q     I ++ Q   + VE++   +    R  A        A I+IGT +       
Sbjct: 258 LTPQT----INRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTP-- 311

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTATPIPRTLVLTSLG 441
           + KL ++IVDE+H    +Q+  L   A    V+          L +ATP   TL     G
Sbjct: 312 FAKLGIIIVDEEHDGSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371

Query: 442 DIDISKITEKPAGRKPIKT 460
                ++T++     P + 
Sbjct: 372 KYHHLQLTQRAGNALPTRN 390


>gi|241668245|ref|ZP_04755823.1| DEAD-box ATP dependent DNA helicase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876779|ref|ZP_05249489.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842800|gb|EET21214.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 362

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 135/314 (42%), Gaps = 33/314 (10%)

Query: 298 LQGDVGSGKTLVALIAMAAAV----EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           L+   GSGKTL  ++ +   +    +   Q V   P   LA Q   FI +   +  I   
Sbjct: 43  LKSPTGSGKTLAYILPIMNKLLIDKKPLTQVVFFTPTHELAIQISNFINETFSSIGIKSL 102

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHRFGV 408
            + G      +++ L++    + +I++G+       + Q  ++   L   I+DE  R   
Sbjct: 103 ALIGKASIDRQKEKLKK----KPNIVVGSVGRILELIDQKKLKAAHLQYCIIDEADRMLE 158

Query: 409 QQRLKLTQ----KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
              LKL +    K T    +L +AT       + S   I+  ++ +    ++ I+   I 
Sbjct: 159 DDSLKLLKQIISKTTNLQYILGSATIKNHAFDIAS-SFIENLELIDNSKEKETIEHSYIT 217

Query: 465 I--NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
              NR  + + +L   +S  K   ++       + ++   V ++ + L       +  IH
Sbjct: 218 ADGNRKTDTLRKLLNKISPSKSIVFL------HRNNDVDFVTKKIDKLE----CGVGSIH 267

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-G 581
           G  + ID+ + +  FK+G  K+L+A+ V   G+D+ D   +I  N +    A+ +Q R G
Sbjct: 268 GEQNKIDRANTIKKFKSGQIKVLVASDVAARGLDINDVDFVI--NYDIPSKAEDYQHRAG 325

Query: 582 RVGRGEEISSCILL 595
           R GR  +  + IL+
Sbjct: 326 RTGRMGKSGNSILI 339


>gi|229156050|ref|ZP_04284149.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342]
 gi|228627371|gb|EEK84099.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342]
          Length = 454

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 138/318 (43%), Gaps = 53/318 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLQ----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+ +   +   +D  ++ +  +    + T+ 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIE 220

Query: 463 IPINRIDEVIER-----LKVVLSEGKK--AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
               R+ E  +R     L+ V+   +   A   C           R+ V R + L+++  
Sbjct: 221 ---QRVIETTDRAKPDALRFVMDRDQPFLAVIFC-----------RTKV-RASKLYDNLK 265

Query: 516 S---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENA 568
               + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ 
Sbjct: 266 GLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNFDIPEDV 325

Query: 569 EHFGLAQLHQLRGRVGRG 586
           E +    +H++ GR GR 
Sbjct: 326 ESY----IHRI-GRTGRA 338


>gi|111219903|ref|YP_710697.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni
           ACN14a]
 gi|111147435|emb|CAJ59085.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni
           ACN14a]
          Length = 608

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 118/293 (40%), Gaps = 28/293 (9%)

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHG 374
           G QA+++ P   LA Q  E I +Y ++    V  + G  P   + +AL +         G
Sbjct: 128 GPQALVLVPTRELAVQVSEAIHRYGRDLGARVLPVYGGAPIGRQVRALVQGVDVVVATPG 187

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP 432
           +A   +G   L  D +  + ++L   DE    G  + +   L Q       +L +AT  P
Sbjct: 188 RALDHMGRGTLRLDGL--HTVVLDEADEMLDMGFAEDIDAILEQAPQKRQTVLFSATLPP 245

Query: 433 R--TLVLTSLGD---IDISKITEKPAGRKPIKTV--IIPINRIDEVIERLKVVLSEGKKA 485
           R   +    L D   I I +   +P     ++ V  ++P       + R+  V S  + A
Sbjct: 246 RMDQIARRHLRDPVRIQIGRAAPEPGAAPLVRQVSYVVPRAYKTAALGRILDVESP-RSA 304

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              C   EE  +     + +  N       S    +HG MS   +E VM+  +  T  LL
Sbjct: 305 IVFCRTREEVDQ-----LADSLNGRGYRAES----LHGGMSQEQRERVMERLRTATADLL 355

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +AT V   G+D    + ++  +      + +H++ GRVGR       I L  P
Sbjct: 356 VATDVAARGLDFEQLTHVVNYSVPSAPDSYVHRI-GRVGRAGREGVAITLAEP 407


>gi|157119649|ref|XP_001653435.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108875244|gb|EAT39469.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 911

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG  S  +++ V+  F++G   +L+AT V   G+DV D   +I  +  +     +H++ 
Sbjct: 508 IHGDKSQSERDYVLQDFRHGKSTILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRI- 566

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           GR GR     +    + P   + +   LSVL+
Sbjct: 567 GRTGRCSSYGTAYTFFTPGNGRQARELLSVLE 598


>gi|108800931|ref|YP_641128.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119870071|ref|YP_940023.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           KMS]
 gi|126436556|ref|YP_001072247.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           JLS]
 gi|108771350|gb|ABG10072.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. MCS]
 gi|119696160|gb|ABL93233.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. KMS]
 gi|126236356|gb|ABN99756.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. JLS]
          Length = 557

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 129/317 (40%), Gaps = 38/317 (11%)

Query: 302 VGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            G+GKT    I + + ++      QA+++AP   LA Q  E   +Y  +  + V  + G 
Sbjct: 59  TGTGKTAAFAIPILSKIDPNSRATQALVLAPTRELALQVAEAFGRYGAHLPVNVLPVYGG 118

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQ 410
                +   L+R     A +++GT     D ++   L        +L   DE  + G  +
Sbjct: 119 SSYGPQMAGLKR----GAQVVVGTPGRVIDHLEKGSLDLSHLDYMVLDEADEMLQMGFAE 174

Query: 411 RLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            ++  L+       V L +AT  P            I KIT+K     P++  +    + 
Sbjct: 175 DVERILSDTPEYKQVALFSATMPP-----------GIKKITKKYL-HDPVEVTVKSKTQT 222

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-------AII 521
            E I +  + +S  +K   +  ++ E ++ +   V  R     E     +       A I
Sbjct: 223 AENITQRYIQVSYPRKMDALT-RLLETEQGDGMIVFVRTKQATEEVAEKLRARGFAAAAI 281

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           +G +    +E  +   K+G+  +L+AT V   G+DV   S ++  +  H   + +H++ G
Sbjct: 282 NGDIPQAVRERTISQLKDGSIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRI-G 340

Query: 582 RVGRGEEISSCILLYHP 598
           R GR     + +L   P
Sbjct: 341 RTGRAGRSGTALLFVTP 357


>gi|121601761|ref|YP_989161.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120613938|gb|ABM44539.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain
           protein [Bartonella bacilliformis KC583]
          Length = 471

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 148/353 (41%), Gaps = 57/353 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QA 324
           P   QE AI  +L+       +L I Q   GSGKTL   + + + +   G        +A
Sbjct: 40  PKPIQEQAIPVMLKGRD----ILGIAQ--TGSGKTLAFGLPILSQILTFGDKRSPKTARA 93

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I    +   +   +I G +    R K ++R+  G   ++I T  
Sbjct: 94  LILVPTRELAVQIEEMISAVVKGAHLSTCLIVGGV---SRFKQIKRMGAG-VDVVIATPG 149

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIP 432
              D ++   + L     +++DE  R         V++  KL  K    H   + +  +P
Sbjct: 150 RLMDLVREKFVDLSRSRFLVLDEADRMLDMGFINDVRRIAKLLCKE---HQTALFSATMP 206

Query: 433 RTLVLTSLGDIDIS-KITEKPAGRKPI----KTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           + +   + G ++   KI   P G   +    K   +P N    ++ RL V          
Sbjct: 207 KEIKELANGLLNEPVKIEVVPQGTTAVEITQKLYCVPKNEKRNILNRLLV----NPDLIS 262

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +   I  K  ++    + R+     H   ++A IHG  S   ++S + +F+ G+ K+L+A
Sbjct: 263 VIVFIRTKHGAD---AITRYLKNMGH---AVATIHGNKSQNARQSALKAFREGSVKVLVA 316

Query: 548 TTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           T +   GID+   S +I     E+AE +    +H++ GR GR       I L+
Sbjct: 317 TDIAARGIDIPGVSHVINYDLPEDAESY----VHRI-GRTGRNGASGDAITLF 364


>gi|332199762|gb|EGJ13837.1| primosomal protein N' [Streptococcus pneumoniae GA41317]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|324993106|gb|EGC25026.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK405]
 gi|324995590|gb|EGC27502.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK678]
          Length = 363

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 140/339 (41%), Gaps = 51/339 (15%)

Query: 302 VGSGKTLVALIA--MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            G+GKTL  L    +    +   Q +I+AP   L+ Q +E  K + +   +  +++    
Sbjct: 46  TGTGKTLAYLFPSLLRLTPKKAQQLLILAPNTELSGQIFEVCKTWAEPLGLTAQLLLSGS 105

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKL 414
            Q   ++ +ER+  G   IIIGT     + I+  K+ +     +I+DE  +     +   
Sbjct: 106 SQ---KRQIERLKKG-PEIIIGTPGRIFELIKLKKIKMMNVETIILDEFDQLLSDSQYHF 161

Query: 415 TQKAT--AP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             K T  AP    ++ M+AT              D  KITE         T+ I I+  D
Sbjct: 162 VDKITHYAPRNHQLIYMSAT-----------AKFDHDKITEN--------TLEISID--D 200

Query: 470 EVIERLKVVLSEGKKAYWI-----CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
           +V++ ++      +K   +        +E+ +   F + +    S  E      A     
Sbjct: 201 QVLDNIQHFYMHVEKRDKVDLLRKLSNVEDFRGLVFFNALSDLGSAEEKLQYREANAVSL 260

Query: 525 MSDID---KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            SD++   ++ ++D FK     LL+AT ++  GID +D+   ++       L       G
Sbjct: 261 ASDVNVKFRKVILDKFKEHQITLLLATDLVARGID-IDSLECVVNYELPRDLETYTHRSG 319

Query: 582 RVGR-GEEISSCILLYHP----PLSKNSYTRLSVLKNTE 615
           R GR G+E     L+ HP     L K +  R  +LKN E
Sbjct: 320 RTGRMGKEGYVITLISHPEELKTLKKYASVREILLKNQE 358


>gi|317140423|gb|ADV03672.1| vasa-like protein [Gadus morhua]
          Length = 354

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 123/302 (40%), Gaps = 61/302 (20%)

Query: 302 VGSGKTLVALIA-----MAAAVEAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+      MA  V A         +A+I+AP   L  Q +   +K+   T 
Sbjct: 56  TGSGKTAAFLLPILQKLMADGVAASSFSEQQEPEAIIVAPTRELINQIFLEARKFAHGTC 115

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   ++ G +   H+ + L R      +++ GT     D I   K+ L     +++DE  
Sbjct: 116 VRPVVLYGGISTGHQIRDLLR----GCNVLCGTPGRLMDMIGRGKVGLTKLRYLVMDEAD 171

Query: 405 RF-------------------GVQQRLKLTQKATAPH-VLLMTATPIPRTLVLTSLGDID 444
           R                      ++R  L   AT P  +  M    + +  +  ++G + 
Sbjct: 172 RMLDMGFEPEMRRLVGSPGMPSKEERQTLMFSATYPEDIQRMAGDFLKKDYLFLAVGVVG 231

Query: 445 --ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
              S + +K          +   ++ D++++ LK   +E    +     +E K++++F  
Sbjct: 232 GACSDVEQK-------LVQVTKFSKRDQLLDILKNTGTERTMVF-----VETKRQADF-- 277

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +  F       T+SI   HG     ++E  +  F++G C +L+AT+V   G+D+ D   
Sbjct: 278 -IAAFLCQENVATTSI---HGDREQREREQALGDFRSGKCPVLVATSVAARGLDIKDVQH 333

Query: 563 II 564
           ++
Sbjct: 334 VV 335


>gi|260592210|ref|ZP_05857668.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
 gi|260535844|gb|EEX18461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
          Length = 573

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 149/346 (43%), Gaps = 46/346 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL+       +L + Q   G+GKT   L+ + + +  GG        VIM
Sbjct: 25  TPVQEKCIPEILKGHD----VLGVAQ--TGTGKTAAYLLPVLSKLADGGYPESAINCVIM 78

Query: 328 APIGILAQQHYEFIK--KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +P   LAQQ  + ++   Y  N    V +  GN    + ++ L+ ++ G A ++I T   
Sbjct: 79  SPTRELAQQIDQAMQGFAYYLNGVSCVAVYGGNDGNRYDQE-LKSLSLG-ADVVIATPGR 136

Query: 386 F-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           F       ++   K+   I+DE  R      L +         ++  A  +P T      
Sbjct: 137 FISHLSLGNVDLSKVSFFILDEADRM-----LDMG----FSEDIMTIAKKLPNTCQTIMF 187

Query: 441 GDIDISKITE--KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                 KI E  K   + P++ + + +++  E I ++  V  E +K   +       K  
Sbjct: 188 SATMPKKIEELAKTLLKNPVE-IKLAVSKPAEKIHQMAYVCYETQKMGILKDVF---KGG 243

Query: 499 NFRSVVERFNSLHE--HFTSSIAIIH---GRM-SDIDKE---SVMDSFKNGTCKLLIATT 549
           N + V+    S  +      +++  H   G M SD+D+E    +M  FK+G   +L+AT 
Sbjct: 244 NMKRVIIFSGSKQKVKRIAGALSRKHINCGEMHSDLDQEQRNDIMFKFKSGQVDVLVATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           ++  GID+ D +++I  +  H     +H++ GR  R +   + I L
Sbjct: 304 IVSRGIDIDDITMVINYDVPHDVEDYVHRI-GRTARADHDGTAITL 348


>gi|294901515|ref|XP_002777392.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885023|gb|EER09208.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 531

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 139/340 (40%), Gaps = 40/340 (11%)

Query: 301 DVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           + GSGKTL  L+     + A        G   +++AP   LA Q  E   ++ ++++I  
Sbjct: 162 ETGSGKTLAFLLPAIVHINAQPYLQRGDGPIVLVLAPTRELAVQTQEECNRFGRSSRIRN 221

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR-- 405
             + G  P+  + +AL   A+G   I I T     D ++       ++  +++DE  R  
Sbjct: 222 TCVYGGTPRGPQARAL---ANG-VEICIATPGRLIDFLESGRTNLRRVTYLVLDEADRML 277

Query: 406 ---FGVQQRLKLTQKATAPHVLLMTAT------PIPRTLVLTSLGDIDISKITEKPAGRK 456
              F  Q R   +Q       LL +AT       + R L       I++  ++ + +   
Sbjct: 278 DMGFEPQIRKITSQVRPDRQTLLWSATWPKEIQGLARDLCREEPVHINVGSMSLRASHNV 337

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
              T  + I +  E  ++LK +L        I    + K+ ++  + + R +        
Sbjct: 338 ---TQYVDIVQDYEKKDKLKQLLERIMDGSKIVIFTDTKRAADDLTRMLRMDGW------ 388

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG     +++ V+  FK+G   ++IAT V   G+DV D   +I  N +  G  + 
Sbjct: 389 PALSIHGDKKQEERDWVLQEFKSGKSPIMIATDVASRGLDVKDLRHVI--NYDFPGQIED 446

Query: 577 HQLR-GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +  R GR GR     S    + P   K +   + VL+  E
Sbjct: 447 YVHRIGRTGRAGAKGSAYSFFTPDKYKLAKDLIGVLREAE 486


>gi|223043911|ref|ZP_03613952.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus capitis SK14]
 gi|314934151|ref|ZP_07841512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
 gi|222442626|gb|EEE48730.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus capitis SK14]
 gi|313653056|gb|EFS16817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
          Length = 511

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 145/340 (42%), Gaps = 53/340 (15%)

Query: 290 QKNRMLRILQGD-------VGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEF 340
           QK+ +   L+GD        G+GKT    I +   V  + G Q++I+AP   LA Q  E 
Sbjct: 29  QKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQQGVQSLILAPTRELAMQVAEQ 88

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-------- 392
           ++++++   + V  + G MP   + KAL+R       I++GT     D +          
Sbjct: 89  LREFSKGQNVQVVTVFGGMPIERQIKALKR----GPQIVVGTPGRVIDHLNRRTLKTNGI 144

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQK---ATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + LIL   DE    G    ++       +     +L +AT +P+     ++ D+ + +  
Sbjct: 145 HTLILDEADEMMNMGFIDDMRFIMDKIPSDQRQTMLFSAT-MPK-----AIQDL-VQQFM 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           + P   K IKT+   ++  D  I+    ++ E +K +       +  + +   V  R   
Sbjct: 198 KTP---KIIKTMNNEMS--DPQIDEYYTIVKELEK-FDTFTNFLDVHQPDLAIVFGRTKR 251

Query: 510 LHEHFTSSI-------AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             +  TS++         +HG ++   +  V+  FKN    +L+AT V   G+D+   S 
Sbjct: 252 RVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSH 311

Query: 563 I----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +    I ++ E +     H++ GR GR  +    +   +P
Sbjct: 312 VYNFDIPQDTESY----THRI-GRTGRAGKEGIAVTFVNP 346


>gi|158294546|ref|XP_315671.4| AGAP005652-PA [Anopheles gambiae str. PEST]
 gi|157015613|gb|EAA11703.5| AGAP005652-PA [Anopheles gambiae str. PEST]
          Length = 728

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 137/335 (40%), Gaps = 55/335 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  ++     ++         G  A+I+AP   LAQQ  +    + 
Sbjct: 151 MVGIAQ--TGSGKTLAYVVPSLVHIQHQATIRRGDGPIALILAPTRELAQQIQQVATDFG 208

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIV 400
                    + G  P+  + + LER     A I+I T     D ++       +   +++
Sbjct: 209 SRVSANNTCVFGGAPKGPQIRDLER----GAEIVIATPGRLIDFLERGITNLRRCTYLVL 264

Query: 401 DEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGD---IDISKIT 449
           DE  R     F  Q R  + Q      VL+ +AT  P   R L    L D   I+I  + 
Sbjct: 265 DEADRMLDMGFEPQIRKIMGQIRPDRQVLMWSAT-WPKEVRNLAEEFLADYIQINIGSLN 323

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----ESNFRSVVE 505
              A    ++  I+ +    E  ++L  +L+E      I  + + K     E+  R  V+
Sbjct: 324 LS-ANHNILQ--IVDVCEDYEKDQKLMKLLTE------ISAEPDTKTIIFVETKRR--VD 372

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII- 564
               +          IHG  S  +++ V+ +F+NG   +L+AT V   G+DV D   +I 
Sbjct: 373 DITRIVNRNGWRAVAIHGDKSQQERDYVLSTFRNGRQGILVATDVAARGLDVEDVKFVIN 432

Query: 565 ---IENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
                N+E +    +H++ GR GR     +   L+
Sbjct: 433 YDYPSNSEDY----VHRI-GRTGRSNNTGTAYTLF 462


>gi|148827371|ref|YP_001292124.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
 gi|148718613|gb|ABQ99740.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
          Length = 613

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 143/356 (40%), Gaps = 61/356 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           +P+  Q+S I  +L      N +L + Q   GSGKT    + L+A     E   Q ++MA
Sbjct: 27  TPSPIQQSCIPHLLN----GNDVLGMAQ--TGSGKTAAFALPLLAQIDPSEKHPQMLVMA 80

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q     E   KY Q T+I+   + G      + +AL++     A +++GT   
Sbjct: 81  PTRELAIQVADACELFVKYAQGTRIVT--LYGGQRYDIQLRALKQ----GAQVVVGTPGR 134

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP---HVLLMTAT-PIP- 432
             D I+   L        +L   DE  R G    ++ T  A  P      L +AT P P 
Sbjct: 135 ILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVE-TVMAELPENHQTALFSATMPEPI 193

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL--------KVVLSEG 482
           R +    + D    KI         I      ++  R +E + R          ++ +  
Sbjct: 194 RRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIFART 253

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           K       ++ EK  + FRS                A ++G M+   +E  +D  +NG+ 
Sbjct: 254 KTGTLDITELLEK--NGFRS----------------AALNGDMTQQLREQTLDRLRNGSL 295

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +++AT V   GID+   S+++  +      + +H++ GR GR       +L   P
Sbjct: 296 DIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEP 350


>gi|70930467|ref|XP_737139.1| DEAD-box subfamily ATP-dependant helicase [Plasmodium chabaudi
           chabaudi]
 gi|56512275|emb|CAH81904.1| DEAD-box subfamily ATP-dependant helicase, putative [Plasmodium
           chabaudi chabaudi]
          Length = 309

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           S AI+ G+MS+ ++ + +++FK G  + LI T V   GID+ +   +II        A  
Sbjct: 235 SCAILKGKMSNDERANNLNAFKKGEIRFLICTDVAARGIDIQNLRYLIIMTMSDNYSAFF 294

Query: 577 HQLRGRVGRGEEISSC 592
           H++ GRVGR  + S C
Sbjct: 295 HKV-GRVGRDGKNSLC 309


>gi|88802153|ref|ZP_01117681.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Polaribacter irgensii 23-P]
 gi|88782811|gb|EAR13988.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Polaribacter irgensii 23-P]
          Length = 452

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 9/154 (5%)

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F  L E F   I +IH   +   +   +  F  G  ++L+AT V+  G+D    S +I  
Sbjct: 259 FKHLEEAFNDEICVIHSNKTQNYRIRSIRQFDEGKNRILLATDVMARGLDFDKVSHVINF 318

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL- 625
           +   F    +H++ GR GR E+    I L+  P  + +   + VL N E   L   E++ 
Sbjct: 319 DTPDFPENYMHRI-GRTGRAEKAGKTI-LFSTPKEQEAKGGIEVLMNYEIPLLELPEEVE 376

Query: 626 ------KQRKEGEILGIKQSGMPKFLIAQPELHD 653
                 +  +  E  GI ++      +  P  HD
Sbjct: 377 VSTMLTEDERPREDQGISKNRTSLEYVPGPAFHD 410


>gi|324326484|gb|ADY21744.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 436

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 138/318 (43%), Gaps = 53/318 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 43  IGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINV 102

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 103 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 158

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+ +   +   +D  ++ +  +    + T+ 
Sbjct: 159 YFGFLYDIEDILDETPGSKQTMLFSAT-MPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIE 217

Query: 463 IPINRIDEVIER-----LKVVLSEGKK--AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
               R+ E  +R     L+ V+   +   A   C           R+ V R + L+++  
Sbjct: 218 ---QRVIETTDRAKPDALRFVMDRDQPFLAVIFC-----------RTKV-RASKLYDNLK 262

Query: 516 S---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENA 568
               + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ 
Sbjct: 263 GLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDV 322

Query: 569 EHFGLAQLHQLRGRVGRG 586
           E +    +H++ GR GR 
Sbjct: 323 ESY----IHRI-GRTGRA 335


>gi|294673582|ref|YP_003574198.1| DEAD/DEAH box helicase [Prevotella ruminicola 23]
 gi|294472821|gb|ADE82210.1| ATP-dependent helicase, DEAD/DEAH box family [Prevotella ruminicola
           23]
          Length = 446

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 140/342 (40%), Gaps = 42/342 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL        +L + Q   G+GKT   L+ + + ++ G        AVIM
Sbjct: 25  TPIQEQCIPEILDGYD----VLGVAQ--TGTGKTAAYLLPILSELDDGDYPKDAINAVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ +      +  +        +R     R     A ++I T     
Sbjct: 79  SPTRELAQQIDQAMQGFGYYLDDVSSVAVYGGNDGNRYDQELRSMRMGADVLIATPGRLL 138

Query: 388 DSIQYYKLIL-----VIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATPIP---RTL 435
             ++   L L      ++DE  R      ++  +K+ ++  A    +M +  +P   R L
Sbjct: 139 SHLKVGNLDLSRCSFFVLDEADRMLDMGFIEDIMKIVKELPASCQRIMFSATMPKKIREL 198

Query: 436 VLTSLGD-IDISKITEKPAGRKPIKTVIIPINRIDEVI---ERLKVVLSEGKKAYWICPQ 491
            +  L + ++I     KPA +         I+++  V    ++LK++    KK       
Sbjct: 199 AVQLLHNPVEIQIAVSKPAEK---------IHQMAYVCYEPQKLKIIQDIFKKGDLQRVI 249

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           I   K+   + V  +  S+H +       +H  +S  +++  M  FK G   +L+AT ++
Sbjct: 250 IFSGKKERVKEVTRKLKSMHINCDQ----MHSDLSQAERDEAMYRFKAGQTDVLVATDIV 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
             GID+ D  ++I  +        +H++ GR  R +     I
Sbjct: 306 ARGIDIDDIRLVINYDVPSDSEDYVHRI-GRTARADRDGEAI 346


>gi|260777564|ref|ZP_05886457.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605577|gb|EEX31862.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 420

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 140/342 (40%), Gaps = 46/342 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQG-DVGSGKT-------LVALIAMAAAVEAGGQ 323
           +PT  QE AI  +L+          +L G   G+GKT       L  L+   A+ +    
Sbjct: 24  TPTPIQEQAIPHVLEGKD-------VLAGAQTGTGKTAAFGLPLLNKLLDQEASRDPQSN 76

Query: 324 ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              A+++ P   LAQQ ++ +  Y    +I +    G      + + L +       ++I
Sbjct: 77  DVLALVVVPTRELAQQVFDSLTAYASAAEIKIVTAYGGTSMNVQTQNLRQ----GCDVLI 132

Query: 381 GTHA-----LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPR 433
            T       L+  +I   K   +++DE  R        +      P +  +L    P  +
Sbjct: 133 ATPGRLLDHLYCKNINLRKTSYLVLDEADR--------MLDMGFMPDIQRILKKLNPERQ 184

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL  ++  D  I  I  K    +P++  + P N   E ++++   + + +KA  +   I 
Sbjct: 185 TLFFSATFDKRIKTIAHKLMN-EPVEVQVTPSNSTAEKVKQMVYPVDKKRKAELLAYLIG 243

Query: 494 EKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +       F    +  ++L +         A I+G  S   ++  +D FK+GT + LIA
Sbjct: 244 SRNWQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGTIRALIA 303

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEE 588
           T V   G+D+     ++  +  +     +H++ GR GR G+E
Sbjct: 304 TDVAARGLDINQLEQVVNFDMPYKAEDYVHRI-GRTGRAGQE 344


>gi|229172846|ref|ZP_04300400.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus MM3]
 gi|228610591|gb|EEK67859.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus MM3]
          Length = 389

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 141/317 (44%), Gaps = 38/317 (11%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQG-DV------GSGKTLVALIAMAAAVE--- 319
           PF     +++  K++ +   QK  +  IL+G DV      G+GKTL  L+ +   +    
Sbjct: 7   PFLQQAWEKAGFKELTE--IQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINPEV 64

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q V++AP   L  Q +E ++K+T  T+I    + G    A  ++ +E++      +I
Sbjct: 65  KQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGG---ADIKRQVEKLKK-HPRVI 120

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           +G+     + I+  KL +     ++ DE  +   Q+ +   Q        ++ +T   R 
Sbjct: 121 VGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQD-------VIKSTMRDRQ 173

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWI--CP 490
           LV  S     I+K  E  A    ++  ++ I R +   ++E   ++    +K  ++    
Sbjct: 174 LVFFS---ATITKAAEDAARDLAVEPQLVRITRAESKSLVEHTYIICERREKNDYVRRIM 230

Query: 491 QIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            + + K   F +   R + + +         A +H   S  ++E+ M +F+ G  ++L+A
Sbjct: 231 HMGDVKAVAFLNDPFRLDEITQKLQFRKMKAAALHAEASKQEREATMRAFRGGKLEILLA 290

Query: 548 TTVIEVGIDVVDASIII 564
           T +   GID+ D + +I
Sbjct: 291 TDIAARGIDIDDLTHVI 307


>gi|226948925|ref|YP_002804016.1| helicase, Snf2 family [Clostridium botulinum A2 str. Kyoto]
 gi|226844507|gb|ACO87173.1| helicase, Snf2 family [Clostridium botulinum A2 str. Kyoto]
          Length = 1097

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 126/281 (44%), Gaps = 30/281 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           IL  ++G GKT+  +  + +  E G +++I+ P  ++     EF +K+ +    I++I  
Sbjct: 669 ILADEMGLGKTIQTISFLLS--EKGNKSLIVTPTSLIYNWQDEF-QKFAE----ILKIGV 721

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI---LVIVDEQHRFG--VQQR 411
            +  +  R K L+     +  +++ T+   ++ IQ YK I     I+DE       + Q 
Sbjct: 722 IHGSKEERMKVLD--GREKYDVLLTTYGTLKNDIQLYKDITFDYCIIDEGQNIKNPLAQS 779

Query: 412 LKLTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISK------------ITEKPAGRKPI 458
               ++  +     +T TPI   L+ L S+ D  +              I E  A    +
Sbjct: 780 TDSVKRINSKVRFALTGTPIENNLMELWSIFDFIMPGYLYSEERFQEKFIDEVEANIDEL 839

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--ESNFRSVVERF-NSLHEHFT 515
           KT+I P     E  + LK +  + +K + +     ++K  ++  +S+ E+  N+  +  T
Sbjct: 840 KTLIRPFILRREKKDVLKDLPHKIEKKFLVEMTTNQEKIYKAYMKSIKEKLKNNKEDKIT 899

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   R   +D   ++D +K G+ KL IA  +++ G+D
Sbjct: 900 IFSYLTRLRQLCLDPSLIIDEYKGGSSKLRIAMELVQEGVD 940


>gi|282600948|ref|ZP_05980244.2| primosomal protein [Subdoligranulum variabile DSM 15176]
 gi|282570121|gb|EFB75656.1| primosomal protein [Subdoligranulum variabile DSM 15176]
          Length = 755

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 16/219 (7%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSP-----TKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           E G+    E   A  +  +IP+ P        Q+ A   +  D+        +L G  GS
Sbjct: 186 EKGVLSVAEQDKALDLFADIPYEPQPITLAPEQQRAFAALAPDLEDGKPHAALLHGVTGS 245

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+V L  +   +E G +A+++ P   L  Q    +K  T  +++ V+    N     R
Sbjct: 246 GKTIVFLKLIERTLELGRKAIVLVPEISLTPQMIRRLKS-TFGSRLAVQHSALN--NTER 302

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT------QKA 418
                 I  G A I++GT +     +Q   LI++  +++H +  +   +        ++A
Sbjct: 303 LLQWRLIQQGHADIVVGTRSAIFAPLQNIGLIIMDEEQEHTYQSESAPRYDAHDVAKKRA 362

Query: 419 TAPHVLLM--TATPIPRTLVLTSLGDIDISKITEKPAGR 455
              + LL+  +ATP+  T      G   +  +T++  GR
Sbjct: 363 AMENSLLVFASATPMTETYHAAESGKYKLLTLTQRYGGR 401


>gi|194397881|ref|YP_002038347.1| primosome assembly protein PriA [Streptococcus pneumoniae G54]
 gi|194357548|gb|ACF55996.1| primosomal protein N' [Streptococcus pneumoniae G54]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|152975008|ref|YP_001374525.1| ATP-dependent DNA helicase RecQ [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023760|gb|ABS21530.1| ATP-dependent DNA helicase, RecQ family [Bacillus cytotoxicus NVH
           391-98]
          Length = 515

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 147/342 (42%), Gaps = 53/342 (15%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           K+++ D+ Q   ++ +L    G GK++   +     +  GG  +I++P+  L +     +
Sbjct: 21  KEVITDLLQGKDVVAML--PTGQGKSMCYQLP---GLLQGGTVLIVSPLLSLMEDQVTQL 75

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII---IGTHALFQDSIQYYKLILV 398
           K   +N  I           + +RKA++++A  +   +   +    L    ++   + L 
Sbjct: 76  KYVVKNRVIA---FNSFRTLSEKRKAIKQLAWYKFVFVSPEMLQSELLMKELKKIPISLF 132

Query: 399 IVDEQH---RFGVQQRL---KLTQ---KATAPHVLLMTATPIPRTL--VLTSLGDIDISK 447
           +VDE H   ++G   R    KL Q   +   P VL +TAT     L  ++ SLG  ++S+
Sbjct: 133 VVDEAHCISQWGYDFRTDYKKLDQVIMRIGRPPVLALTATATKEVLQDIIVSLGLKNVSQ 192

Query: 448 ---ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
                ++P        + I +  ++ + E+ + +LS    +Y   P I      + R+  
Sbjct: 193 HVYSIDRP-------NIAIEVQFLETIEEKKEALLSH--VSYLQGPGI---IYCSSRAWT 240

Query: 505 ERFNSLHEHFTS----SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           ER   L E+  S     +A  HG M   ++  +   F N   +L+I T+   +G++  + 
Sbjct: 241 ER---LTEYLRSKGIIDVAFYHGGMDHEERMLIQQQFMNDQLQLVICTSAFGMGVNKPNT 297

Query: 561 SIIIIENAEHF----GLAQLHQLRGRVGRGEEISSCILLYHP 598
             II     HF     +A   Q  GR GR  E S  ILL  P
Sbjct: 298 RYII-----HFHYPTNIASYLQEIGRAGRDGEASIAILLCSP 334


>gi|145614688|ref|XP_361928.2| hypothetical protein MGG_11403 [Magnaporthe oryzae 70-15]
 gi|152032666|sp|A4RN46|PRP5_MAGO7 RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|145021588|gb|EDK05717.1| hypothetical protein MGG_11403 [Magnaporthe oryzae 70-15]
          Length = 1012

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG    +D++S +  FK+G C ++IAT+V   G+DV    +++  +A +     +H+  
Sbjct: 658 LHGGKDQVDRDSTISDFKSGVCPVMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRA- 716

Query: 581 GRVGRGEEISSCI 593
           GR GR     + +
Sbjct: 717 GRTGRAGNTGTAV 729


>gi|73965227|ref|XP_861717.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 9 [Canis
           familiaris]
          Length = 620

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 87/402 (21%), Positives = 153/402 (38%), Gaps = 71/402 (17%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E   P NV   IA++        PT  Q       L  +     M+ + Q   GSGKTL 
Sbjct: 98  EANFPANVMDVIARQNFT----EPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLS 147

Query: 310 ALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L+     +          G   +++AP   LAQQ  +   +Y +  ++    I G  P+
Sbjct: 148 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 207

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF---GVQ---- 409
             + + LER       I I T     D ++  K  L     +++DE  R    G +    
Sbjct: 208 GPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIR 263

Query: 410 --------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                    R  L   AT P  +   A    +  +  ++G +++S      A    ++ V
Sbjct: 264 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELS------ANHNILQIV 317

Query: 462 II--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517
            +   + + +++I  ++ ++SE           +E K   F     R + L         
Sbjct: 318 DVCHDVEKDEKLIRLMEEIMSE-----------KENKTIVFVETKRRCDELTRKMRRDGW 366

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG------IDVVDASIIIIENAEH 570
               IHG  S  +++ V++ FK+G   +LIAT V   G      ++V D   +I  +  +
Sbjct: 367 PAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLAFYKLVNVEDVKFVINYDYPN 426

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
                +H++ GR  R  +  +    + P   K     +SVL+
Sbjct: 427 SSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 467


>gi|312869906|ref|ZP_07730045.1| primosomal protein N' [Lactobacillus oris PB013-T2-3]
 gi|311094491|gb|EFQ52796.1| primosomal protein N' [Lactobacillus oris PB013-T2-3]
          Length = 810

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 15/171 (8%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P      Q+ A+ +I   +        +LQG  GSGKT V L  +A A+  G  A+++ P
Sbjct: 271 PLRLNADQQRAVDEISSQVHAHKATTFLLQGVTGSGKTEVYLQTIAQALADGRTALMLVP 330

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q    + ++ +     V ++   +    +     RI  G+A +++G  +     
Sbjct: 331 EISLTPQ---IVNRFRRRFGSQVAVLHSGLSNGEQYDEWRRIERGEAKVVVGARSAVFAP 387

Query: 390 IQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATP 430
           +    L +VI+DE+H          R+  ++  K   +     V+L +ATP
Sbjct: 388 LD--NLGVVILDEEHEGSYKQDEAPRYHAREVAKWRGRYHGAPVVLGSATP 436


>gi|301794711|emb|CBW37162.1| putative primosomal protein N' [Streptococcus pneumoniae INV104]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|32352202|dbj|BAC78594.1| RNA helicase [Oryza sativa Japonica Group]
          Length = 408

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 119/285 (41%), Gaps = 40/285 (14%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           + ++++P   LAQQ  + + +      I    + G   +  +  AL+        I+IGT
Sbjct: 65  RVLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQISALK----SGVDIVIGT 120

Query: 383 HALFQDSIQY-----YKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIP 432
               +D I+        +  V++DE  R     F  + R  L+Q A+    ++ +AT  P
Sbjct: 121 PGRMKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASVRQTVMFSATWPP 180

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVI----IPINRIDEVIERLKVVLSEGKKAYWI 488
                       + ++ ++     PIK VI    +  N   +V++ ++V+    + +  +
Sbjct: 181 A-----------VHQLAQEFMDPNPIKVVIGSEDLAANH--DVMQIVEVLDDRSRDSRLV 227

Query: 489 CPQIEEKKESNFRSVV--------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
               +  K    R +V         R  ++ +    S   +HG  +  D+   +  FK G
Sbjct: 228 ALLDKYHKAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEG 287

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +C L+IAT V   G+D+ D  ++I  +        +H++ GR GR
Sbjct: 288 SCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRI-GRTGR 331


>gi|78779116|ref|YP_397228.1| DEAD/DEAH box helicase-like [Prochlorococcus marinus str. MIT 9312]
 gi|78712615|gb|ABB49792.1| DEAD/DEAH box helicase-like protein [Prochlorococcus marinus str.
           MIT 9312]
          Length = 828

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 159/376 (42%), Gaps = 82/376 (21%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           N   KI Q    N  + P   QE + K  L      N    ++Q   G GKT  +L+   
Sbjct: 12  NSISKIKQFFFSN-GWEPLTYQEESWKAFL------NGENGLIQVPTGCGKTYASLMGPL 64

Query: 316 AAVE-----AGGQAVIMAPIGILAQQHYEFIKKYTQ------NTQIIVEIITGNMPQAHR 364
           + +E        Q +++ P+  L++     +K   Q      N +I VEI  G+     +
Sbjct: 65  SQLEDPKNNKSVQILLITPLKALSRD----LKNSVQLAALHFNKEITVEIRNGDTTPYEK 120

Query: 365 RKALER-----IAHGQAHIII----GTHALFQDSIQYYKLILVIVDEQHRF-----GVQQ 410
           +K L +     I   ++  ++    G++ LF++      L  +I+DE H       G Q 
Sbjct: 121 KKQLAKPPNILITTPESLSLLLSNKGSNNLFKE------LSSIIIDEWHELMGSKRGNQC 174

Query: 411 RLKLTQ---KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
            L L+          +  M+AT          +G+I+  +      G   IK  II  N 
Sbjct: 175 ELSLSWLRGNIKNLQIWAMSAT----------IGNIE--EAARAIVGMSAIKPKIISTN- 221

Query: 468 IDEVIERLKVVLSE----------GKKAYWICPQIEEKKES-----NFRSVVERFNSLHE 512
           I + IE + V+  E          G +++    +I +K +S     N R+  ER+    +
Sbjct: 222 IQKEIEIISVLPEEETTFPWSGHLGIRSHSSLLKILDKNKSTLLFTNTRNQSERWYQCLK 281

Query: 513 HF----TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV--VDASIIIIE 566
            F       IA+ HG +   D++ V +  K+G  K ++ T+ +++G+D   VD  I+ I 
Sbjct: 282 FFLPEMEDKIALHHGSLDKEDRKKVEEGVKDGLIKWVVCTSSLDLGVDFQPVD-QIVQIG 340

Query: 567 NAEHFGLAQLHQLRGR 582
           +A++  LA+L Q  GR
Sbjct: 341 SAKN--LARLIQRAGR 354


>gi|330969509|gb|EGH69575.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 442

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 121/283 (42%), Gaps = 27/283 (9%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHII 379
           +A+++AP   LA Q +E I++Y ++  +      G +   PQ  + +    +       +
Sbjct: 76  RALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVLVATPGRL 135

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP---HVLLMTATPIP- 432
           +  H   Q+++++ +L  +I+DE  R    G  + L+    A  P     LL +AT    
Sbjct: 136 LDLHR--QNAVKFSQLQTLILDEADRMLDLGFAEELRGIY-AVLPKQRQTLLFSATFSDE 192

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L    L D    +++ +      +K  ++ +++      +  + +   KK  W    
Sbjct: 193 IRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKK----RKADLFIHLMKKHRWGQVL 248

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +  K       +V+R  +L  +       IHG      ++  +D FK+   K+L+AT V 
Sbjct: 249 VFAKTRVGVDQLVDRLQALGMNADG----IHGDKPQATRQRALDRFKSNEVKILVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
             G+D+ D   ++  +        +H++ GR GR    GE IS
Sbjct: 305 ARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGLTGEAIS 346


>gi|329121361|ref|ZP_08249987.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
 gi|327469770|gb|EGF15236.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
          Length = 497

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 129/316 (40%), Gaps = 50/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I +   ++    G QA++++P   LA Q  E I    Q   I   
Sbjct: 50  IGQAQTGTGKTAAFGIPILQRIDTSKPGPQAIVLSPTRELAIQSAEEINHLAQYMNIKTI 109

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHR 405
            I G      + +AL++    + +II+ T     D ++   + L  V        DE   
Sbjct: 110 PIYGGQDIERQFRALKK----KTNIIVATPGRLMDHMKRKTIDLSNVQIAVLDEGDEMVD 165

Query: 406 FGVQQRLKLTQKATAP--HVLLMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G    ++    AT      L  +AT P P R L  + L + +I KI          K  
Sbjct: 166 MGFIDDIRTIMAATPKERQTLFFSATMPAPIRELANSFLNEPEIVKI----------KAA 215

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---NFRSVVERFNSLHEHFTS-- 516
            + I+    +IE+  + L + +K   +C  ++ +       F     R + + E      
Sbjct: 216 TVTID----LIEQEYIELPDRQKFDALCRLLDMQSPELAIVFVRTKRRADEVTEALKKRA 271

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            S   +HG +S   ++SV+  FK GT   L+AT V   G+D+   + +      +F + Q
Sbjct: 272 YSAEGLHGDLSQQKRDSVIRQFKEGTIDFLVATDVAARGLDISGVTHVY-----NFDMPQ 326

Query: 576 -----LHQLRGRVGRG 586
                +H++ GR GR 
Sbjct: 327 DPEIYVHRV-GRTGRA 341


>gi|262173979|ref|ZP_06041656.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
 gi|261891337|gb|EEY37324.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
          Length = 422

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 131/329 (39%), Gaps = 32/329 (9%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I T
Sbjct: 83  RALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQLNHL----RGGVDILIAT 138

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      L L     +++DE  R      +   Q+      +L   +P+ +TL  
Sbjct: 139 PGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR------VLRRLSPLRQTLFF 192

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  I  +  +   R P++  + P N   E ++++   + + +K   +   I  K  
Sbjct: 193 SATFDSKIKAVAYRIM-RDPVEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNW 251

Query: 498 SN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F    +  ++L E           I+G  S   ++  +D FK G  + LIAT V 
Sbjct: 252 QQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKVGKVRALIATDVA 311

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYH---PPLSK----- 602
             G+D+     ++  +        +H++ GR GR G    +  LL H   P L       
Sbjct: 312 ARGLDIAQLEQVVNYDMPFKAEDYVHRI-GRTGRAGLAGLAVSLLSHDEEPQLEAIERLL 370

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           N+      LK  E   ++ EE+  +R  G
Sbjct: 371 NTRLPQEWLKGFEPSPVVREENSPRRSSG 399


>gi|228965117|ref|ZP_04126213.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228794550|gb|EEM42060.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 389

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 141/317 (44%), Gaps = 38/317 (11%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQG-DV------GSGKTLVALIAMAAAVE--- 319
           PF     +++  K++ +   QK  +  IL+G DV      G+GKTL  L+ +   +    
Sbjct: 7   PFLQEAWEKAGFKELTE--IQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINPEV 64

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q V++AP   L  Q +E ++K+T  T+I    + G    A  ++ +E++      +I
Sbjct: 65  KQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGG---ADIKRQVEKLKK-HPRVI 120

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           +G+     + I+  KL +     ++ DE  +   Q+ +   Q        ++ +T   R 
Sbjct: 121 VGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQD-------VIKSTMRDRQ 173

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWI--CP 490
           LV  S     I+K  E  A    ++  ++ I R +   ++E   ++    +K  ++    
Sbjct: 174 LVFFS---ATITKAAEDAARDLAVEPQLVRITRAESKSLVEHTYIICERREKNDYVRRIM 230

Query: 491 QIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            + + K   F +   R + + +         A +H   S  ++E+ M +F+ G  ++L+A
Sbjct: 231 HMGDVKAVAFLNDPFRLDEITQKLQFRKMKAAALHAEASKQEREATMRAFRGGKLEILLA 290

Query: 548 TTVIEVGIDVVDASIII 564
           T +   GID+ D + +I
Sbjct: 291 TDIAARGIDIDDLTHVI 307


>gi|229174534|ref|ZP_04302066.1| Primosomal protein N' [Bacillus cereus MM3]
 gi|228609094|gb|EEK66384.1| Primosomal protein N' [Bacillus cereus MM3]
          Length = 767

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q+  I  IL  ++ +     +L G  GSGKT V L ++AA +  G +A+++ P
Sbjct: 228 PFPLTEEQKQVIAPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLAKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++     ++   ++        RK L +    +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQVAVLHSALSVGEKYDEWRKILRK----EVKVVVGARSAVFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|224089735|ref|XP_002194560.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [Taeniopygia
           guttata]
          Length = 927

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 21/138 (15%)

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF------NSLHEHFTSSIAIIHGR- 524
           +E L  +L E   AY   PQ      +  R++V         N L  H    + +  GR 
Sbjct: 612 LEELACILDE---AYHYNPQTRTILFAKTRALVAALKKWVEANPLLSHIKPDVMMGKGRR 668

Query: 525 -----MSDIDKESVMDSFKNG-TCKLLIATTVIEVGIDVVDASIIIIENAEHFG-LAQLH 577
                M+   ++ V+D+F+N    +LLIAT+V + GID+ + +++++   E+FG + ++ 
Sbjct: 669 DRTVGMTLPMQKGVLDAFRNDKDIRLLIATSVADEGIDITECNLVVL--YEYFGNVTKMI 726

Query: 578 QLRGRVGRGEEISSCILL 595
           Q+RGR GR ++ S CIL+
Sbjct: 727 QVRGR-GRAKD-SKCILV 742


>gi|220903642|ref|YP_002478954.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219867941|gb|ACL48276.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 562

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 134/316 (42%), Gaps = 31/316 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           ++Q   GSGKT   L+ M   + A     QA+++AP   LA Q         + T I+  
Sbjct: 83  MVQSRTGSGKTGCYLLPMLPRLSADLKAPQALVLAPTRELAVQVEREAAVLFEGTGIVTV 142

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRF-- 406
            + G +     +K ++ + +G A +I+GT       L + ++    L  ++ DE  R   
Sbjct: 143 AVYGGV---GYKKQMDALRNG-AQLIVGTPGRVLDHLLRRTLDLGDLRELVFDEADRMLS 198

Query: 407 -GVQQRLKLTQKATAP---HVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKT 460
            G    +K  Q+       H  L +AT  P  L L+   + +  +  +++K      ++ 
Sbjct: 199 IGFYPDMKEIQRYLPRRRIHTCLFSATYPPHVLKLSGEFMAEPAMLSLSQKEVHVAEVQH 258

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWI-CPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           +   +  +D+    ++++ +E   +  I C         N +S V     + + F  +  
Sbjct: 259 LFCEVKPMDKDRALVRLLETENPASAIIFC---------NTKSNVHYVAGVLQGFGYNAD 309

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +   +S   +E+V++  + G  + L+AT V   GID+ + S + +        + +H+ 
Sbjct: 310 ELSADLSQSRREAVLEKIRQGKLQYLVATDVAARGIDIPELSHVFLYEPPEDHESYIHRA 369

Query: 580 RGRVGRGEEISSCILL 595
            GR GR     + I L
Sbjct: 370 -GRTGRAGAAGTVISL 384


>gi|41248|emb|CAA36872.1| unnamed protein product [Escherichia coli]
 gi|315619429|gb|EFU99973.1| ATP-independent RNA helicase dbpA [Escherichia coli 3431]
          Length = 432

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 20  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 79

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+   H    II+ T     D +Q   + L     +++DE  R 
Sbjct: 80  T--LCGGQPFGMQRDSLQHAPH----IIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 133

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 134 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 193

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 194 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 245

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 246 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 288

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 289 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 320


>gi|331269759|ref|YP_004396251.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum BKT015925]
 gi|329126309|gb|AEB76254.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum BKT015925]
          Length = 813

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 15/131 (11%)

Query: 478 VLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKE 531
           ++  G K  ++   IE  KE +   + +  +  ++++E   +   S+   H  +SD ++E
Sbjct: 210 IIKSGSKKEYLLNYIENNKEQSGIIYAATRKEVDNIYEGLKNKGYSVGRYHAGLSDGERE 269

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGE 587
           +  + F +    ++IAT    +GID  +   +I     H+ + +     +Q  GR GR  
Sbjct: 270 NNQEEFIHDRLDIMIATNAFGMGIDKPNIRYVI-----HYSIPKSIEAYYQEIGRAGRDG 324

Query: 588 EISSCILLYHP 598
           E S CILL+ P
Sbjct: 325 EKSECILLFAP 335


>gi|315635445|ref|ZP_07890711.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
 gi|315480203|gb|EFU70870.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
          Length = 516

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 141/350 (40%), Gaps = 55/350 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAPI 330
           P+  QE AI  IL       R + + Q   G+GKT    + +   ++A  G +AV++ P 
Sbjct: 24  PSPIQEQAIPYILD-----GRDI-VGQAHTGTGKTAAFGLPILNKIKAKSGVEAVVIVPT 77

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  + + ++ +   I    + G    A + K +E      + +I+ T   F D +
Sbjct: 78  RELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIE-----NSSVIVATPGRFLDLL 132

Query: 391 QYYKLIL----VIVDEQHR---------------FGVQQRLKLTQKATAPHVLLMTATPI 431
           +  K+ +    VI+DE                  F  + R  L   AT P  +   A  I
Sbjct: 133 RGDKISIKPKFVILDEADEMLDMGFLDDIKEIFTFLPENRQTLLFSATMPTAIKNLAKTI 192

Query: 432 ---PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
              P  + LT   D+  SKIT+           ++     D+ + RL       KK+   
Sbjct: 193 LKEPEFVTLTK-SDVTNSKITQT--------FYVVDEKERDDALIRL-FDFKNPKKSIIF 242

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C     KK+      V+R ++           +HG M    +E  + +FK+   ++LIAT
Sbjct: 243 C---RTKKD------VDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILIAT 293

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+DV D + +   +      + +H++ GR GR  +    I +  P
Sbjct: 294 DVAARGLDVNDVTHVFNYHLPFDSESYVHRI-GRTGRAGKEGMAISIVTP 342


>gi|296876849|ref|ZP_06900897.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           15912]
 gi|296432351|gb|EFH18150.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           15912]
          Length = 523

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 42/337 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    +     ++      QA+++AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGLPTLEKIDVDNTVIQALVIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I+   L        IL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLN 157

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  + ++  +++       LL +AT +P      ++  I +  + E      P    I 
Sbjct: 158 MGFLEDIEAIISRVPETRQTLLFSAT-MPE-----AIKRIGVQFMKE------PEHVKIA 205

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--- 520
                 +++++  + + EG+K +    ++ + ++     +  R     +  T  + I   
Sbjct: 206 AKELTTDLVDQYYIRVKEGEK-FDTMTRLMDVEQPELAIIFGRTKRRVDELTRGLKIRGF 264

Query: 521 ----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +
Sbjct: 265 RAEGIHGDLDQNKRLRVLRDFKNGNVDVLVATDVAARGLDISGVTHVYNYDIPQDPESYV 324

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           H++ GR GR  +    I    P    N    L +++N
Sbjct: 325 HRI-GRTGRAGKTGQSITFVSP----NEMGYLQIIEN 356


>gi|218231258|ref|YP_002367146.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228939601|ref|ZP_04102185.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228972459|ref|ZP_04133068.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979080|ref|ZP_04139429.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407]
 gi|218159215|gb|ACK59207.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228780666|gb|EEM28884.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407]
 gi|228787281|gb|EEM35251.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820093|gb|EEM66134.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 458

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNFDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|118482639|gb|ABK93239.1| unknown [Populus trichocarpa]
          Length = 413

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 123/312 (39%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYDIVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-------YYKL-ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++       Y K+ +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 196

Query: 406 FGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V + +AT  P  L +T        K   KP        V I
Sbjct: 197 RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR-------KFMNKP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GI+V   S++I  +      
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGINVQQVSLVINYDLPTQPE 361

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 362 NYLHRI-GRSGR 372


>gi|148989397|ref|ZP_01820765.1| primosome assembly protein PriA [Streptococcus pneumoniae SP6-BS73]
 gi|237649149|ref|ZP_04523401.1| primosome assembly protein PriA [Streptococcus pneumoniae CCRI
           1974]
 gi|237820735|ref|ZP_04596580.1| primosome assembly protein PriA [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147925147|gb|EDK76227.1| primosome assembly protein PriA [Streptococcus pneumoniae SP6-BS73]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|148997791|ref|ZP_01825355.1| primosome assembly protein PriA [Streptococcus pneumoniae
           SP11-BS70]
 gi|168575072|ref|ZP_02721035.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae MLV-016]
 gi|307068361|ref|YP_003877327.1| primosomal protein N' [Streptococcus pneumoniae AP200]
 gi|147756290|gb|EDK63332.1| primosome assembly protein PriA [Streptococcus pneumoniae
           SP11-BS70]
 gi|183578753|gb|EDT99281.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae MLV-016]
 gi|306409898|gb|ADM85325.1| Primosomal protein N' (replication factor Y) - superfamily II
           helicase [Streptococcus pneumoniae AP200]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|126274019|ref|XP_001387376.1| Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Scheffersomyces
           stipitis CBS 6054]
 gi|146324945|sp|A3GFI4|IF4A_PICST RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|126213246|gb|EAZ63353.1| Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Pichia stipitis
           CBS 6054]
          Length = 397

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 126/299 (42%), Gaps = 62/299 (20%)

Query: 299 QGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   G+GKT    I+    +   E   QA+I+AP   LA Q    I        + V   
Sbjct: 66  QAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHAS 125

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--YYK------LILVIVDEQHRFG 407
            G        +A          +++GT     D I+  Y+K       I+   DE    G
Sbjct: 126 IGGTSMQDDIEAF----RSGVQVVVGTPGRVFDMIERRYFKTEKVKMFIMDEADEMLSSG 181

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            ++++    +L  + T   V+L++AT +P+          D+ ++T K     P++ ++ 
Sbjct: 182 FKEQIYNIFRLLPETT--QVVLLSAT-MPQ----------DVLEVTTKFMN-NPVRILV- 226

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------------------SNFRSVVE 505
              + DE+         EG K ++I  ++E+ K                    N RS VE
Sbjct: 227 ---KKDELT-------LEGIKQFYINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVE 276

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
              +  +    +++ IH  +   +++++M  F++G+ ++LIAT ++  GIDV   S++I
Sbjct: 277 FLTTKLKAENFTVSAIHADLPQAERDTIMKEFRSGSSRILIATDLLARGIDVQQVSLVI 335


>gi|125717559|ref|YP_001034692.1| RNA helicase [Streptococcus sanguinis SK36]
 gi|125497476|gb|ABN44142.1| RNA helicase, putative [Streptococcus sanguinis SK36]
          Length = 488

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 131/335 (39%), Gaps = 38/335 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT          ++      QA+I+AP   LA Q  E + ++ ++  + V 
Sbjct: 7   IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVR 66

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I        Q   LIL   DE   
Sbjct: 67  SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLN 122

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G  + ++           +++  P  R  +L S    D  K       ++P    I   
Sbjct: 123 MGFLEDIES----------IISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK 172

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI----- 520
               E++++  + + E +K +    ++ + ++     V  R     +  T  + I     
Sbjct: 173 ELTTELVDQYYIRVKENEK-FDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRA 231

Query: 521 --IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +H+
Sbjct: 232 EGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 291

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + GR GR  +    I    P    N    L +++N
Sbjct: 292 I-GRTGRAGKSGQSITFVAP----NEMGYLQIIEN 321


>gi|145517903|ref|XP_001444829.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412262|emb|CAK77432.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1127

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG  +   ++S+M+ +K G  KLL AT +   G+DV D +++I  +   +    +H++ 
Sbjct: 380 LHGNKTQGQRDSIMECYKKGDTKLLCATDLASRGLDVSDITVVINYDFPKYFDDYIHRI- 438

Query: 581 GRVGRGEEISSCILLY 596
           GR GR       I  +
Sbjct: 439 GRTGRAGRKGRAISFF 454


>gi|124506353|ref|XP_001351774.1| DEAD-box subfamily ATP-dependent helicase, putative [Plasmodium
           falciparum 3D7]
 gi|23504703|emb|CAD51581.1| DEAD-box subfamily ATP-dependent helicase, putative [Plasmodium
           falciparum 3D7]
 gi|156072128|gb|ABU45415.1| DEAD-box helicase 7 [Plasmodium falciparum]
          Length = 841

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 9/83 (10%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFG 572
           S  I+ G+MS+ ++++ + +FK G  + LI T V   GID+ +   +II    +N   F 
Sbjct: 631 SCVILKGKMSNDERKNNLQAFKKGEVRFLICTDVAARGIDIQNLRYLIIMTLSDNINTF- 689

Query: 573 LAQLHQLRGRVGRGEEISSCILL 595
               H++ GRVGR  + S CI+L
Sbjct: 690 ---FHKI-GRVGRDGKNSLCIVL 708


>gi|30020539|ref|NP_832170.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|229127843|ref|ZP_04256829.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4]
 gi|29896090|gb|AAP09371.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|228655608|gb|EEL11460.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4]
          Length = 458

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|89092815|ref|ZP_01165767.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
 gi|89082840|gb|EAR62060.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
          Length = 415

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 126/305 (41%), Gaps = 33/305 (10%)

Query: 302 VGSGKT-------LVALIAMAAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            G+GKT       L  L      +E+G  +A+I+ P   LAQQ ++ I +Y Q+  + + 
Sbjct: 47  TGTGKTAAFSLPVLQQLADKPKELESGQVRALILTPTRELAQQLFDTIGRYNQHLGLRMV 106

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGV 408
            + G +    + K L R     A ++I T     + I    + L     V++DE  R   
Sbjct: 107 AVYGGVNLDTQMKKLRR----GADLLIATPGRMLEHINACNVNLGTTEFVVLDEADRM-- 160

Query: 409 QQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                L        + ++  TP  R TL+ ++     + K++ K   R P K      N 
Sbjct: 161 -----LDMGFVTDVMSILDVTPKSRQTLLFSATLSDSVHKLSNKILTR-PEKIKAARHNT 214

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLH---EHFTSSIAII 521
           I + IE +   + E +KA      I+E+       F S   + N L    ++      + 
Sbjct: 215 IADTIEHVVYPVEEQRKADLFAELIKEENWFQVLVFTSTKAQANELMMDLKYDGIEAVLC 274

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG  S   +   +  FK G  ++L+AT V   G+D+     ++  N  +     +H++ G
Sbjct: 275 HGDKSQGARRRAVADFKAGKIQVLVATEVAARGLDIQGLEQVVNYNLPYLAEDYVHRV-G 333

Query: 582 RVGRG 586
           R GR 
Sbjct: 334 RAGRA 338


>gi|89075877|ref|ZP_01162256.1| putative ATP-dependent RNA helicase DbpA [Photobacterium sp. SKA34]
 gi|89048406|gb|EAR53983.1| putative ATP-dependent RNA helicase DbpA [Photobacterium sp. SKA34]
          Length = 461

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 135/317 (42%), Gaps = 32/317 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I QG  GSGKT    + +   ++      Q +++ P   LA Q  + I++  +    I V
Sbjct: 45  IAQGKTGSGKTAAFGLGLLQNLKVKRFRVQTLVLCPTRELADQVAKEIRRLARAIHNIKV 104

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G  P   +  +LE   HG AHII+GT    ++ ++   L L     +++DE  R  
Sbjct: 105 LTLCGGTPFGPQIGSLE---HG-AHIIVGTPGRVEEHVRKGFLCLDELNTLVLDEADRML 160

Query: 407 --GVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
             G Q  L   +    +    LL +AT P     +   +    +    E       I   
Sbjct: 161 EMGFQDSLDAIIDVAPSDRQTLLFSATYPTQIASIAKRIMRNPVEVKVESNHDNSSISQH 220

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
              +   D+ +  ++++LS+ +    +  C    E +E +        + L ++  SSIA
Sbjct: 221 FYKVESNDDRLRAVRLLLSQHRPESCVIFCNTKREAQEIS--------DDLEDYGFSSIA 272

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG +   +++  +  F N +  +L+AT V   G+D+ +   +I  +        +H++
Sbjct: 273 L-HGDLEQRERDRTLVLFANKSRSILVATDVAARGLDIDNLDAVINYHLARDTEVHVHRI 331

Query: 580 RGRVGR-GEEISSCILL 595
            GR GR G +  +C L 
Sbjct: 332 -GRTGRAGSKGIACSLF 347


>gi|329769092|ref|ZP_08260513.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325]
 gi|328839438|gb|EGF89015.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325]
          Length = 486

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 133/320 (41%), Gaps = 35/320 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           + Q   GSGKT    I +   V+     Q++++AP   LAQQ  E ++   +   + V I
Sbjct: 43  LAQAQTGSGKTGAFGIPIVDIVKRSEDLQSLVLAPTRELAQQVGEQLRLMARAKGLKVSI 102

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF 406
           I G      + + L++    +  I++GT     D I        +   L+L   DE    
Sbjct: 103 IFGGTSIERQIQDLKK----RPQIVVGTPGRVIDHINRRTLKLDKLTHLVLDEADEMLNM 158

Query: 407 GVQQRLK-LTQKATAPHVLLMTATPIPRTLVLTS---LGDIDISKITEKPAGRKPIKTVI 462
           G  + ++ +  K T+ H  L+ +  +P+T++  S   + D  + K          IK   
Sbjct: 159 GFIEDVRFILSKITSNHQTLLFSATMPKTIMELSKDFMKDYKLIKTMSDEDLNPDIKEYA 218

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
             I R +E +E L   L        I     +++     S +     L E        +H
Sbjct: 219 T-IARENEKLETLVGFLDVQNPNLAIVFGRTKRRVDELSSALIAKGYLAEG-------LH 270

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQ 578
           G ++   +  ++  FKN + ++L+AT V   GID+ D + +    I ++ E +     H+
Sbjct: 271 GDITQSKRLEILRKFKNNSLQILVATDVAARGIDISDVTHVYNFDIPQDTESY----THR 326

Query: 579 LRGRVGRGEEISSCILLYHP 598
           + GR GR  +    +   +P
Sbjct: 327 I-GRTGRAGKSGVAVTFLNP 345


>gi|307127950|ref|YP_003879981.1| primosomal protein N' [Streptococcus pneumoniae 670-6B]
 gi|306485012|gb|ADM91881.1| primosomal protein N' [Streptococcus pneumoniae 670-6B]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|254561714|ref|YP_003068809.1| RNA helicase [Methylobacterium extorquens DM4]
 gi|254268992|emb|CAX24953.1| RNA helicase [Methylobacterium extorquens DM4]
          Length = 510

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 5/78 (6%)

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A IHG  S   +E  + +F++G+C++L+AT +   GIDV   + ++  +  +   + +H+
Sbjct: 273 AAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGIDVDGVTHVVNYDLPNVPESYVHR 332

Query: 579 LRGRVGR----GEEISSC 592
           + GR  R    G+ IS C
Sbjct: 333 I-GRTARAGAEGQAISFC 349


>gi|300361710|ref|ZP_07057887.1| ATP-dependent helicase RecQ [Lactobacillus gasseri JV-V03]
 gi|300354329|gb|EFJ70200.1| ATP-dependent helicase RecQ [Lactobacillus gasseri JV-V03]
          Length = 475

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 123/326 (37%), Gaps = 59/326 (18%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            G+GK++   I   A V +G   VI   I ++  Q    I    QN  I    +    PQ
Sbjct: 39  TGAGKSMCYQIP--ALVNSGLTLVISPLISLMKDQ----IDSLKQNG-INAAALNSATPQ 91

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQRLK 413
                 L +   G+  ++  T        F+  + +  + LV VDE H   ++G   R  
Sbjct: 92  EEVNPILRQAYEGKIKLLYVTPERLAMDYFRYQLNFLDISLVAVDEAHCISQWGHDFRPA 151

Query: 414 LTQK-------ATAPHVLLMTATPIP--------------RTLVLTSLGDIDISKITEKP 452
             Q         + P++L +TAT  P              +  V+TS    ++S      
Sbjct: 152 YRQIMDGVKSIKSNPNILALTATATPSVQKDIAEQLKIPNKNYVITSFARPNLS------ 205

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
                 K V  P N    +++ +K   +E    Y           ++ R  VE       
Sbjct: 206 -----FKVVDNPKNTNLYLLDYIKKHPNESGIIY-----------ASTRKHVEELTDYLA 249

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                 A  H  +S+ ++  V D+F+    ++++AT    +GID  +   +I  N+    
Sbjct: 250 QNGILTASYHAGLSNEERSDVQDAFQFDKVQVIVATNAFGMGIDKRNVRFVIHANSTP-N 308

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP 598
           L   +Q  GR GR  E    I++YHP
Sbjct: 309 LESYYQEAGRAGRDGERCEGIMIYHP 334


>gi|126652237|ref|ZP_01724416.1| YqfR [Bacillus sp. B14905]
 gi|126590969|gb|EAZ85081.1| YqfR [Bacillus sp. B14905]
          Length = 434

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 141/329 (42%), Gaps = 52/329 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT   LI +   ++   Q   AVI +P   LAQQ Y+ + +  + T I  +
Sbjct: 44  IGQAHTGTGKTHSFLIPIVQRIDVEKQEVQAVITSPTRELAQQIYDALSQLIEGTAIQAK 103

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI-----LVIVDEQH---R 405
           +  G      ++++++++   Q  I++GT    +D +    L      +++VDE      
Sbjct: 104 LFIGG---TDKQRSIDKL-KTQPQIVVGTPGRIRDLVSAQALFVHTAPILVVDEADLAFD 159

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTL--VLTSLGDIDIS-KITEKPAGRKPIKT 460
            G  + +    +Q      + + +AT IP  L   L    D  +   + +K    + I  
Sbjct: 160 MGFIEEIDGFASQMPEKLEMFVFSAT-IPEKLQPFLKKYMDAPVHVHMNDKRPVAEGIDF 218

Query: 461 VIIPI------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS-LHEH 513
           +++P+       R+ EVIE +   L+       I         +N R   E     L+EH
Sbjct: 219 MLVPVRSKSRNKRLLEVIEGINPFLA------VIF--------TNTRKTAEHVAGYLNEH 264

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAE 569
                  IHG +S  D++ +M   ++   + ++AT +   GID+   S +    I E+ E
Sbjct: 265 GIRC-GQIHGDLSPRDRKKMMKQVRDLEYQYIVATDLAARGIDIQGVSHVINYEIPEDLE 323

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            F    +H++ GR  R     + I L+ P
Sbjct: 324 FF----IHRV-GRTARAGNKGTAITLFEP 347


>gi|42522549|ref|NP_967929.1| ATP-dependent DNA helicase RecQ [Bdellovibrio bacteriovorus HD100]
 gi|39575081|emb|CAE78922.1| ATP-dependent DNA helicase RecQ [Bdellovibrio bacteriovorus HD100]
          Length = 478

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 139/353 (39%), Gaps = 54/353 (15%)

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           N PF+  + ++   + +L  +     +L ++    G GK+L       A    G   VI 
Sbjct: 11  NFPFTSFRGEQ---EQVLHKVWANQNLLALMP--TGMGKSLC--FQFPAKTREGLVVVIS 63

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             I ++  Q ++      Q   I    ++  + +  R     R+A G   +I  T   F+
Sbjct: 64  PLIALMQDQVFK-----AQELGISATFLSSTLSRDERESRQNRLAKGDFKLIYVTPERFR 118

Query: 388 -----DSIQYYKLILVIVDEQH---RFGVQQRLKLTQKAT------APHVLLMTATPIPR 433
                 +I+   + L+ VDE H   ++G   R   ++          P  L +TAT  P 
Sbjct: 119 KPEFLQAIEKRAIQLLAVDEAHCISQWGHDFRPDYSRVGEFRALLGNPPTLALTATATPE 178

Query: 434 TL--VLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-----LSEGK 483
               +L  L   D   IS   E+P        + + ++ I  + E+++ +     L+ G 
Sbjct: 179 VQKDILKKLNMEDALIISAGIERP-------NLALNVHDIYGIDEKIRAIVGLRHLTPGT 231

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            A   C  I+  K+ +  S + R    H        + HG +   D++    +F+     
Sbjct: 232 -AIIYCSLIQTLKKVS--SALNRLGMAH-------LVYHGDLPPQDRKRNQKAFQTEEAP 281

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           L+IAT    +GID  +  ++I     +  L    Q  GR GR    SSC LLY
Sbjct: 282 LMIATPAFGLGIDKSNVRLLIHAETPN-SLESYFQEVGRAGRDGAESSCHLLY 333


>gi|85709174|ref|ZP_01040240.1| primosomal protein N [Erythrobacter sp. NAP1]
 gi|85690708|gb|EAQ30711.1| primosomal protein N [Erythrobacter sp. NAP1]
          Length = 721

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 7/115 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L G  GSGKT      +A A+  G Q +++ P   L +    F+ ++            
Sbjct: 213 LLDGVTGSGKTETYFEPVAEALRMGRQVLVLLPEIALTEN---FLTRFEDRFGAAPVQWH 269

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            ++    RR+A   I+ G+A +I+G   ALF   + Y  L L++VDE H    +Q
Sbjct: 270 SSLKSTERRRAWRAISTGEAQVIVGARSALF---LPYADLGLIVVDEAHEISFKQ 321


>gi|332638872|ref|ZP_08417735.1| superfamily II DNA/RNA helicase [Weissella cibaria KACC 11862]
          Length = 428

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 129/296 (43%), Gaps = 37/296 (12%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G+GKT +    +  A++AG +  +++P + ++     E   +  +  +    ++ G+ P
Sbjct: 119 TGAGKTEMLFPMLTVALQAGKRIALVSPRVDVIV----ELAPRLREAFKTDFVVLYGDSP 174

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL---TQK 417
           + +R   L         ++  TH L +    +    +++VDE   F   + ++L    Q+
Sbjct: 175 ETYRYTQL---------VLASTHQLLRFRAAFD---VIVVDEVDAFPYAENVQLEGAVQR 222

Query: 418 ATAPHV--LLMTATPIPRTLVLTSLGDIDISKITEKPAGRK-PIKTVIIPINRIDEVIER 474
           AT P      +TATP  R L   S   + IS +  +  G+  P  T+I   N   ++  R
Sbjct: 223 ATKPQGCHFYLTATPSARLLRDVSKQRLRISLLPRRYHGQPLPNFTIIKIGNWRKKLSWR 282

Query: 475 LKVVLSE---GKKAYWI-CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           ++ +L E    K+ + I  P +     ++  + +     L       IA  H    D D+
Sbjct: 283 IQRILREYVISKQRFLIFVPHV-----ADLTATLNEITRLQPSL--KIAATHA--GDPDR 333

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII-ENAEHFGLAQLHQLRGRVGR 585
           +  + + +    + LI TT++E G+      ++I+  +   F  A L Q+ GR GR
Sbjct: 334 QGKVQAMRASELQALITTTILERGVTFKGIDVMILGADDPVFSQAALIQIAGRCGR 389


>gi|332363463|gb|EGJ41246.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355]
          Length = 523

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 130/335 (38%), Gaps = 38/335 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT          ++      QA+I+AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I        Q   LIL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLN 157

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G  + ++           +++  P  R  +L S    D  K       ++P    I   
Sbjct: 158 MGFLEDIES----------IISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK 207

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI----- 520
               E++++  + + E +K +    ++ +  +     V  R     +  T  + I     
Sbjct: 208 ELTTELVDQYYIRVKENEK-FDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKIRGFRA 266

Query: 521 --IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +H+
Sbjct: 267 EGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 326

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + GR GR  +    I    P    N    L +++N
Sbjct: 327 I-GRTGRAGKSGQSITFVAP----NEMGYLQIIEN 356


>gi|225857349|ref|YP_002738860.1| primosome assembly protein PriA [Streptococcus pneumoniae P1031]
 gi|225725219|gb|ACO21071.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae P1031]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|209809235|ref|YP_002264773.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
           [Aliivibrio salmonicida LFI1238]
 gi|208010797|emb|CAQ81193.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
           [Aliivibrio salmonicida LFI1238]
          Length = 641

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 119/294 (40%), Gaps = 42/294 (14%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+IMAP   LA Q    +K   +N + + V  I G      + +AL R     AHI++G
Sbjct: 76  QAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALSR----GAHIVVG 131

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFG-VQQRLKLTQKA--TAPHVLL-MTAT 429
           T    +D +   +L        IL   DE  + G V     + +KA  TA  +L   T  
Sbjct: 132 TPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPETAQRILFSATMP 191

Query: 430 PIPRTLVLTSLGD---IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKA 485
           P+ +T+V   L D   +D++                   N +++V +   +V   E  +A
Sbjct: 192 PMVKTIVDRYLRDPARVDVAGTN----------------NTVEQVTQNFWIVKGVEKDEA 235

Query: 486 YWICPQIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                + EE   S      R   ER            A +HG +    +E  +D  K G 
Sbjct: 236 MSRLLETEEIDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKRGV 295

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             +L+AT V+  G+DV   + +   +      + +H++ GR GR       ILL
Sbjct: 296 IDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILL 348


>gi|169833172|ref|YP_001695111.1| primosome assembly protein PriA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168995674|gb|ACA36286.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae Hungary19A-6]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|91206662|sp|Q4WEB4|FAL1_ASPFU RecName: Full=ATP-dependent RNA helicase fal1
          Length = 398

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 147/354 (41%), Gaps = 83/354 (23%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    + ++ +   V    QA++++
Sbjct: 46  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSIGILQVIDTVVRETQALVLS 99

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + + ++ +GQ H++ GT     D
Sbjct: 100 PTRELATQIQSVIMALGDYMNVQCHACIGGTNIG---EDIRKLDYGQ-HVVSGTPGRVAD 155

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +   P   V++++AT +P      
Sbjct: 156 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSAT-LP------ 208

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D+  +T K     P++ ++          +R ++ L EG K Y+I     EK+E 
Sbjct: 209 ----YDVLDMTTKFMT-DPVRVLV----------KRDELTL-EGIKQYFIAV---EKEEW 249

Query: 499 NFRSVVERFNSL-----------------------HEHFTSSIAIIHGRMSDIDKESVMD 535
            F ++ + +++L                         +FT  ++ +HG M   +++S+M 
Sbjct: 250 KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT--VSSMHGEMPQKERDSIMQ 307

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIII----ENAEHFGLAQLHQLRGRVGR 585
            F+ G  ++LI+T V   GIDV   S++I      N E++    +H++ GR GR
Sbjct: 308 DFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENY----IHRI-GRSGR 356


>gi|50421181|ref|XP_459136.1| DEHA2D15048p [Debaryomyces hansenii CBS767]
 gi|74659326|sp|Q6BRN4|IF4A_DEBHA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|49654803|emb|CAG87307.1| DEHA2D15048p [Debaryomyces hansenii]
          Length = 397

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 126/288 (43%), Gaps = 40/288 (13%)

Query: 299 QGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   G+GKT    I+    +   E   QA+I+AP   LA Q    I        + V   
Sbjct: 66  QAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIQNVITHIGLYLNVTVHAS 125

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--YYK------LILVIVDEQHRFG 407
            G       +  +E    G   I++GT     D I+  ++K       IL   DE    G
Sbjct: 126 IGG---TSMKDDIEAFKSG-VQIVVGTPGRVFDMIERRFFKTDKVKMFILDEADEMLSSG 181

Query: 408 VQQRL----KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            ++++    +L  + T   V+L++AT +P+          D+ ++T K     P++ ++ 
Sbjct: 182 FKEQIYNIFRLLPETT--QVVLLSAT-MPQ----------DVLEVTTKFM-NNPVRILVK 227

Query: 464 PINRIDEVIERLKV-VLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTS 516
                 E I++  + V  E  K   +C   +    +      N RS VE   +  +    
Sbjct: 228 KDELTLEGIKQFYINVEQEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKLKGENF 287

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +++ IH  +   D++++M+ F++G+ ++LI+T ++  GIDV   S++I
Sbjct: 288 TVSAIHADLPQADRDTIMNEFRSGSSRILISTDLLARGIDVQQVSLVI 335


>gi|289619838|emb|CBI54121.1| unnamed protein product [Sordaria macrospora]
          Length = 825

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 130/340 (38%), Gaps = 56/340 (16%)

Query: 302 VGSGKTLVALIAM------AAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L+ +      A   E  G  A+I++P   LA Q +E ++K  +N      +
Sbjct: 105 TGSGKTLAFLVPVLEKLYRARWTELDGLGALIISPTRELAVQIFEVLRKIGRNHSFSAGL 164

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGT------HALFQDSIQYYKLILVIVDEQHR--- 405
           + G        + L R+     +I++ T      H           L ++++DE  R   
Sbjct: 165 VIGGKSLKEEAERLSRM-----NILVCTPGRMLQHLDQTAGFDVDNLQILVLDEADRIMD 219

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPR--TLVLTSLGDIDISKITEKPAGRKPIKT- 460
            G QQ +   +     +   LL +AT   R   L   SL D +   + E  A   P+   
Sbjct: 220 MGFQQAVDALVEHLPKSRQTLLFSATQSKRVSDLARLSLKDPEYVSVHEAAASATPVNLQ 279

Query: 461 ---VIIPI-NRIDEVIERLK--------VVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              ++ P+  ++D +   L+        V LS GK+  ++          +F+ +     
Sbjct: 280 QHYIVTPLPEKLDTLWGFLRTNLKSKIIVFLSSGKQVRFVY--------ESFKRMQPGIP 331

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            LH         +HGR   I +  + + F +     L AT V+  G+D      +I  + 
Sbjct: 332 LLH---------LHGRQKQIARLEITNRFTSAKYSCLFATDVVARGVDFPAVDWVIQADC 382

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
                  +H++ GR  R E     +L   P   +    RL
Sbjct: 383 PEDADTYIHRV-GRTARYESKGRAVLFLDPSEEEGFIKRL 421


>gi|312197808|ref|YP_004017869.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
 gi|311229144|gb|ADP81999.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
          Length = 566

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 133/317 (41%), Gaps = 37/317 (11%)

Query: 302 VGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITG 357
            G+GKT    + + + ++A     QA+++AP   L  Q  E   +Y  + T + V  + G
Sbjct: 54  TGTGKTAAFALPILSRIDARSTATQALVLAPTRELVLQVAEAFGRYAHHLTGLHVLPVYG 113

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQ 409
               A +     R     A +++GT     D ++           L+L   DE  R G Q
Sbjct: 114 GQAYAPQLAGFRR----GAQVVVGTPGRVIDHLERGTLDLGGLRMLVLDEADEMLRMGFQ 169

Query: 410 QRLK--LTQKATAPHVLLMTAT-PIP-RTLVLTSLGD---IDISKITEKPAG-RKPIKTV 461
           + +   L     A  V L +AT P P R +    L D   I +   T   A  R+   TV
Sbjct: 170 EEVDRILADTPDAKQVALFSATMPAPIRRISRQYLRDPVEITVRARTVTAANTRQRFLTV 229

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
             P  ++D +   L+V   E  +A  I  + +   E     V ER  S    F +    I
Sbjct: 230 AGP-RKMDALTRVLEV---EPFEAMIIFVRTKSATED----VAERLRS--RGFATEA--I 277

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           +G +S   +E ++   ++GT  LL+AT V   G+DV   + ++  +      + +H++ G
Sbjct: 278 NGDLSQPQREKLIAQLRDGTLDLLVATDVAARGLDVERITHVVNYDIPTDPESYVHRI-G 336

Query: 582 RVGRGEEISSCILLYHP 598
           R GR       +LL  P
Sbjct: 337 RTGRAGRSGEALLLVTP 353


>gi|182415515|ref|YP_001820581.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177842729|gb|ACB76981.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 594

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 127/303 (41%), Gaps = 35/303 (11%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAV---IMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITG 357
            GSGKT+   I     V+   +AV   ++ P   LA Q  E +    Q  + I+ + I G
Sbjct: 50  TGSGKTVAFAIPALERVDPKLRAVQVLVLCPTRELAVQVAEEMGHLAQFKRGIMGVPIYG 109

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---GVQ 409
                 + +AL   A G + ++IGT     D     +++   L LV++DE  R    G +
Sbjct: 110 GQSYERQYRAL---AAG-SQVVIGTPGRVMDHMERGTLKLGALKLVVLDEADRMLDMGFR 165

Query: 410 QRL-KLTQKATAPHVLLMTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           + + K+      P  LL  +  +PR    L+  +  D    KI         ++ +   +
Sbjct: 166 EDIEKILSAVPVPRQLLFFSATMPRPIQELIKRTARDPAWIKIEAVAQNAPQVEQIYFEV 225

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIH 522
           +R  + +E L  ++      Y I           F S     + L EH  +   ++  +H
Sbjct: 226 DRRSK-LEALTRLIDVHDFRYGIV----------FCSTKVMVDDLDEHLHARGYAVDRLH 274

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G +S   ++ VMD F+    + LIAT V   G+DV D  ++   +  +      H++ GR
Sbjct: 275 GDLSQTQRDRVMDKFRRRGFEFLIATDVAARGLDVDDLEVVFNYDLPNDAEDYTHRI-GR 333

Query: 583 VGR 585
            GR
Sbjct: 334 TGR 336


>gi|163851993|ref|YP_001640036.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|240139120|ref|YP_002963595.1| RNA helicase [Methylobacterium extorquens AM1]
 gi|163663598|gb|ABY30965.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
 gi|240009092|gb|ACS40318.1| RNA helicase [Methylobacterium extorquens AM1]
          Length = 510

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 5/78 (6%)

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A IHG  S   +E  + +F++G+C++L+AT +   GIDV   + ++  +  +   + +H+
Sbjct: 273 AAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGIDVDGVTHVVNYDLPNVPESYVHR 332

Query: 579 LRGRVGR----GEEISSC 592
           + GR  R    G+ IS C
Sbjct: 333 I-GRTARAGAEGQAISFC 349


>gi|332098054|gb|EGJ03027.1| ATP-independent RNA helicase dbpA [Shigella dysenteriae 155-74]
          Length = 432

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 20  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 79

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 80  T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 133

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 134 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 193

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 194 QFYETSSKGKIPLLQRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 245

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 246 ---------------LHGDLEQRDRDQTLVRFANGSTRVLVATDVAARGLDI--KSLELV 288

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 289 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 320


>gi|324506964|gb|ADY42960.1| ATP-dependent RNA helicase DDX58 [Ascaris suum]
          Length = 400

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 4/75 (5%)

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+  ++ +E +M  F NG  K+L AT+V E GID+   +++I  N     +A + Q RGR
Sbjct: 123 GQNVNVQREKLM-QFANGDVKVLCATSVAEEGIDIQKCTLVIKYNYATNEIAHV-QRRGR 180

Query: 583 VGRGEEISSCILLYH 597
            GR E  S CILL H
Sbjct: 181 -GRAEG-SRCILLTH 193


>gi|322493294|emb|CBZ28579.1| putative mitochondrial DEAD box protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 544

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 121/312 (38%), Gaps = 39/312 (12%)

Query: 302 VGSGKTLV----ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            GSGKT+     AL       +     +++AP   L QQ  +  +        + E   G
Sbjct: 139 TGSGKTVAFAVPALAGFKPNPDGTPSVLVLAPTRELVQQTTKVFQNLGCGQVRVCEAYGG 198

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHAL--FQDS--IQYYKLILVIVDEQHRF---GVQQ 410
               A R     R+ +G   ++     L  F D   +    L  ++ DE  R    G Q 
Sbjct: 199 ----ASRDLQARRLRNGCDALVACPGRLKDFLDGGDVSIRNLSFLVFDEADRLLDMGFQV 254

Query: 411 RLK----LTQKATAPHVLLMTATPIPRT---LVLTSLGDIDISKITEKPAG-----RKPI 458
            L         A+ P  ++ +AT  P +   +    L D D   I    AG      + I
Sbjct: 255 HLDEIMAYLDSASHPQTMMWSAT-WPESVQEMARKYLSD-DRVLIRAGTAGAGLQVNEHI 312

Query: 459 KTVIIPINRIDEVIERLKVVLSEG-----KKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           K  +I      E IE+L  ++ +G     K    I  + +   E+  R+   R      +
Sbjct: 313 KQEVIFCRTFTERIEKLGSLVEDGTIDDDKDKLIIFVERQADTENTARAFSHRLGIDARY 372

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +  IHG +S   ++ VM  FK+   +LL+AT V   G+D+ D + ++   A     
Sbjct: 373 ----VGTIHGGLSQRQRDRVMGMFKSNHIRLLVATDVASRGLDIPDVTCVVNFQAPKTID 428

Query: 574 AQLHQLRGRVGR 585
           +  H++ GR GR
Sbjct: 429 SYCHRI-GRTGR 439


>gi|301053986|ref|YP_003792197.1| ATP-dependent RNA helicase [Bacillus anthracis CI]
 gi|300376155|gb|ADK05059.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 454

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 138/317 (43%), Gaps = 53/317 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+ +   +   +D  ++ +  +    + T+ 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIE 220

Query: 463 IPINRIDEVIER-----LKVVLSEGKK--AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
               R+ E  +R     L+ V+   +   A   C           R+ V R + L+++  
Sbjct: 221 ---QRVIETTDRAKPDALRFVMDRDQPFLAVIFC-----------RTKV-RASKLYDNLK 265

Query: 516 S---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENA 568
               + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ 
Sbjct: 266 GLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDV 325

Query: 569 EHFGLAQLHQLRGRVGR 585
           E +    +H++ GR GR
Sbjct: 326 ESY----IHRI-GRTGR 337


>gi|289168459|ref|YP_003446728.1| primosomal protein N' [Streptococcus mitis B6]
 gi|288908026|emb|CBJ22866.1| primosomal protein N' [Streptococcus mitis B6]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++ +     V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGEK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVIIIDEEHEATYKQ 393


>gi|260769645|ref|ZP_05878578.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
 gi|260614983|gb|EEX40169.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
          Length = 442

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 134/334 (40%), Gaps = 65/334 (19%)

Query: 302 VGSGKTLVALIAM------AAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L+ M        A+ A   + VI+ P   LA+Q Y  ++           +
Sbjct: 47  TGSGKTLAFLLPMLHKALKTKALSARDPRGVILVPTRELAKQVYGELRTMLSGLSYTATL 106

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---F 406
           ITG      + KAL R        I+ T     D +++  L L     +I+DE  R    
Sbjct: 107 ITGGENFNDQVKALRR----GPKFIVATPGRLADHLEHRSLFLEGLETLILDEADRMLDL 162

Query: 407 GVQQRLKLTQKATAPH----VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           G   +L+    A A H     LL +AT     L    + DI    + +            
Sbjct: 163 GFAPQLRHIHNA-AKHRRRQTLLFSAT-----LDHAQVNDIAYEMLNDAKH--------- 207

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--------ESNFRSVV---------E 505
           I +   +E  + +        + +++C  ++ K+        ++++R V+         E
Sbjct: 208 IAVGGSNEQHKDIT-------QRFYLCDHLDHKEALLDRVLDDADYRQVIIFTATRDDTE 260

Query: 506 RFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           R  + L+E    ++A+  G ++ I + ++M  F+    K+L+ T V   G+D+ + + +I
Sbjct: 261 RLTAKLNERKLKAVAL-SGSLNQIQRNTIMSQFERAVFKILVTTDVASRGLDIANVTHVI 319

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             +        +H++ GR GR       I L  P
Sbjct: 320 NFDMPKHTEEYVHRV-GRTGRAGNKGDAISLVGP 352


>gi|242373788|ref|ZP_04819362.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
           M23864:W1]
 gi|242348525|gb|EES40127.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
           M23864:W1]
          Length = 459

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 156/375 (41%), Gaps = 57/375 (15%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           KDI+Q + +    L IL    GSGK+L         +      VI   I ++  Q    +
Sbjct: 20  KDIIQSVLEGKHTLGILP--TGSGKSLC--YQFPTYLIEKPTLVISPLISLMDDQ----V 71

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI----- 396
            +   N +  V  I   M +  +R  ++R+   +  I +    + Q   Q +KLI     
Sbjct: 72  MQMKLNGESQVAYIHSGMDEVEKRNNIKRLPQSR-FIYLSPEYILQP--QNFKLISRIDF 128

Query: 397 -LVIVDEQH---RFGVQQRL------KLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDI 445
            L+++DE H    +G   R       ++        VL +TAT  P     LT + ++ +
Sbjct: 129 GLIVLDEAHCLSEWGYDFRPHYALIGQIISHFKHARVLALTATAPPHLDEDLTQILNVKL 188

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVV 504
           + + +    R+ I       N  DE IE L   L+  G    +I         S+ +  +
Sbjct: 189 N-VIKTSMSRENISLQHRNFNDDDEKIEWLIPFLNYSGPTIIYI---------SSKKKCL 238

Query: 505 ERFNSLHEH-FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           E  N +++  F +   I HG +S  ++++V   F N    +++AT+   +GI+  D   +
Sbjct: 239 ELANLIYDAGFLT--GIYHGDLSYQERQTVQQQFLNNDIPVIVATSAFGMGINKKDIRTV 296

Query: 564 IIENAEHFGL----AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           I     HF L    +   Q  GR GR  ++S  I LY P    +    L  L  T+   +
Sbjct: 297 I-----HFHLSSSPSNYLQEIGRAGRDGKLSQAISLYQP----DDRFLLETLLFTD---M 344

Query: 620 IAEEDLKQRKEGEIL 634
           I +ED+   + G+ L
Sbjct: 345 ITDEDISMFELGDFL 359


>gi|224371767|ref|YP_002605931.1| putative ATP-dependent DNA helicase [Desulfobacterium autotrophicum
           HRM2]
 gi|223694484|gb|ACN17767.1| putative ATP-dependent DNA helicase [Desulfobacterium autotrophicum
           HRM2]
          Length = 1740

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 11/114 (9%)

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           V+ RF  L+E    S     GR S+ DK +  D F  G   ++ AT    +GID  D  +
Sbjct: 559 VLSRF--LNERGIESYPFHAGR-SEPDKRNTQDDFVAGKISVICATNAFGMGIDKKDIRL 615

Query: 563 IIIENAEHFG-LAQLHQLRGRVGRGEEISSCILLYHPP-----LSKNSYTRLSV 610
           +I  +A+  G L    Q  GR GR    + CILLY         S N+Y++LS+
Sbjct: 616 VI--HADIPGSLENYLQEAGRAGRDTAPADCILLYEQEDIENQFSLNAYSKLSL 667


>gi|199597152|ref|ZP_03210584.1| Primosomal protein N' (replication factor Y) - superfamily II
           helicase [Lactobacillus rhamnosus HN001]
 gi|258508666|ref|YP_003171417.1| primosomal protein N' [Lactobacillus rhamnosus GG]
 gi|199591956|gb|EDZ00031.1| Primosomal protein N' (replication factor Y) - superfamily II
           helicase [Lactobacillus rhamnosus HN001]
 gi|257148593|emb|CAR87566.1| Primosomal protein N' [Lactobacillus rhamnosus GG]
 gi|259649972|dbj|BAI42134.1| primosomal protein N' [Lactobacillus rhamnosus GG]
          Length = 805

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 17/172 (9%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P   T  Q+  +  I Q +  K     +L+G  GSGKT V L  +A  + AG  A+++ P
Sbjct: 266 PLPLTVDQKKIVDTINQAVKAKEPKTFLLEGVTGSGKTEVYLQVIAQVLAAGQTALMLVP 325

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q  + +K       + V ++   +    +     RIA G+A +++G  +     
Sbjct: 326 EIALTPQMVDRVKG---RFGMHVAVMHSGLSDGEKYDEWRRIARGEAQVVVGARSAAFAP 382

Query: 390 IQYYKLILVIVDEQHRFGVQQR-----------LKLTQKATAPHVLLMTATP 430
           +++  + + I+DE+H    +Q            LK  Q   AP V+L +ATP
Sbjct: 383 LRH--IGVFIMDEEHETSYKQDSVPRYHARDVLLKRAQIHHAP-VVLGSATP 431


>gi|168493646|ref|ZP_02717789.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae CDC3059-06]
 gi|183576298|gb|EDT96826.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae CDC3059-06]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|309781736|ref|ZP_07676469.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
 gi|308919377|gb|EFP65041.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
          Length = 498

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 120/296 (40%), Gaps = 37/296 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q Y+ + KY + T +   ++ G +    + + L R       I++ T
Sbjct: 96  RALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRR----GVEILVAT 151

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLV 436
                D     S+   ++ ++++DE  R      L   Q+       ++   P  R TL+
Sbjct: 152 PGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQR-------IINLLPAHRQTLL 204

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I ++      R P    +   N   E + ++   + +  K   +   + ++ 
Sbjct: 205 FSATFSPEIKRLAASYL-RHPQTIEVARSNATAENVRQVIYTVPDNHKQAALVHLLRQRA 263

Query: 497 E----------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E          SN +    R     E    +   IHG  +  ++   +++FK GT  +L+
Sbjct: 264 EQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGTVDVLV 323

Query: 547 ATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT V   G+D+     +I      NAE +    +H++ GR GR       + L+ P
Sbjct: 324 ATDVAARGLDISQMPCVINFDLPFNAEDY----VHRI-GRTGRAGASGDALSLFAP 374


>gi|254830000|ref|ZP_05234655.1| hypothetical protein Lmon1_01525 [Listeria monocytogenes 10403S]
          Length = 470

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 129/313 (41%), Gaps = 37/313 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKT    I +A  VE      QA+I+ P   LA Q         +  ++   
Sbjct: 40  VAKSQTGSGKTAAFAIPIAEQVEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAA 99

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
            I G  P A ++  L +    + HI++GT     D I+           L+L  VDE   
Sbjct: 100 AIYGQSPFAKQKLELSQ----KNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLS 155

Query: 406 FGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD--IDISKITEKPAGRKPIKT 460
            G   +++  L++       L  +AT P     ++    D  + I   +EK     PI  
Sbjct: 156 MGFIDQVEDILSRLPKQRQNLFFSATMPEEMQDLIKRYQDNPMVIEMASEKT---NPIFH 212

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           V +  +  ++ ++   V+++E   +  I           F +   + + L +      + 
Sbjct: 213 VEMQTDNKEKTLK--DVLITENPDSAII-----------FCNTKNQVDELTDLLDVKASK 259

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG +   D+   MD FK+G  + LIAT V   GIDV + S++I  +        +H++ 
Sbjct: 260 IHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRI- 318

Query: 581 GRVGRGEEISSCI 593
           GR GR  +    I
Sbjct: 319 GRTGRAGKSGKAI 331


>gi|158293649|ref|XP_001688603.1| AGAP004912-PA [Anopheles gambiae str. PEST]
 gi|157016549|gb|EDO63983.1| AGAP004912-PA [Anopheles gambiae str. PEST]
          Length = 679

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHFGLAQL 576
           IHG  S  D++ V+++F+  T  +L+AT V   G+DV D   +I      N E +    +
Sbjct: 355 IHGDKSQKDRDYVLNTFRRSTNGILVATDVASRGLDVDDVKFVINFDFPNNTEDY----V 410

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           H++ GR GR     +    + P  S  +   ++VL++ 
Sbjct: 411 HRI-GRTGRSTNKGTSYTFFTPANSSKAPDLITVLQDA 447


>gi|149020818|ref|ZP_01835347.1| primosome assembly protein PriA [Streptococcus pneumoniae
           SP23-BS72]
 gi|225859489|ref|YP_002740999.1| primosome assembly protein PriA [Streptococcus pneumoniae 70585]
 gi|147930459|gb|EDK81442.1| primosome assembly protein PriA [Streptococcus pneumoniae
           SP23-BS72]
 gi|225721067|gb|ACO16921.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae 70585]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|3775993|emb|CAA09199.1| RNA helicase [Arabidopsis thaliana]
          Length = 505

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 133/305 (43%), Gaps = 43/305 (14%)

Query: 303 GSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           G+GKT    I +   ++      QAVI+ P   LA Q  +  K+  ++ +I V + TG  
Sbjct: 178 GTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGG- 236

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKL 414
                +  + R+ +   H+++GT     D  +    +L     +++DE  +        L
Sbjct: 237 --TSLKDDIMRL-YQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKL-------L 286

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV--- 471
           +Q+       L++  P  R +++ S        +T K    + +    + IN +DE+   
Sbjct: 287 SQEFQPSVEHLISFLPESRQILMFSA----TFPVTVKDFKDRFLTNPYV-INLMDELTLK 341

Query: 472 -IERLKVVLSEGKKAYWIC---PQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGR 524
            I +    + E +K + +     +++  +   F + V R   L +  T    S + IH +
Sbjct: 342 GITQFYAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCSYIHAK 401

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLR 580
           M    +  V   F+NG C+ L+ T +   GID+   +++I     +NAE +    LH++ 
Sbjct: 402 MLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETY----LHRV- 456

Query: 581 GRVGR 585
           GR GR
Sbjct: 457 GRSGR 461


>gi|85060144|ref|YP_455846.1| primosome assembly protein PriA [Sodalis glossinidius str.
           'morsitans']
 gi|84780664|dbj|BAE75441.1| primosomal protein N' factor [Sodalis glossinidius str.
           'morsitans']
          Length = 731

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 9/116 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   ++ G QA+++ P IG+  Q     I ++ +     VE++
Sbjct: 220 LLAGVTGSGKTEVYLTVLENILDKGQQALVLVPEIGLTPQT----ISRFRERFNAPVEVL 275

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              +  + R     +   G+  I+IGT  ALF     + +L ++++DE+H    +Q
Sbjct: 276 HSGLNDSERLVVWLKARRGECAIVIGTRSALF---TPFARLGIIVIDEEHDSSYKQ 328


>gi|54026656|ref|YP_120898.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
 gi|54018164|dbj|BAD59534.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
          Length = 602

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 132/317 (41%), Gaps = 37/317 (11%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQII-VEIITG 357
            G+GKT    I +   +E  G+   A+++AP   LA Q  E   +Y  +   + V  I G
Sbjct: 75  TGTGKTAAFAIPILMGLEVTGRQPRALVLAPTRELAIQVAEAFGRYAAHMPGLHVLPIYG 134

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQ 409
                 +   L R     AH+++GT     D +        Q   L+L   DE  + G Q
Sbjct: 135 GQSYGVQLSGLRR----GAHVVVGTPGRVIDHLEKGTLDLSQLQYLVLDEADEMLKMGFQ 190

Query: 410 QRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           + ++  L        V L +AT +P            I KI+++   R+P++  +    +
Sbjct: 191 EDVERILADTPREKQVALFSAT-MPAA----------IRKISKQYL-REPVEITVKAKTQ 238

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIE-EKKESN--FRSVVERFNSLHEHFTS---SIAII 521
            +  I +  V +S  +K   +   +E E  E+   F    +    L E   +   S A I
Sbjct: 239 TNTNITQRWVQVSHQRKLDALTRVLEVEPFEAMIIFVRTKQGTEELAEKLRARGFSAAAI 298

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           +G ++   +E  +   K+G   +L+AT V   G+DV   S ++  +  H   + +H++ G
Sbjct: 299 NGDIAQNQRERTIGQLKSGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRI-G 357

Query: 582 RVGRGEEISSCILLYHP 598
           R GR       +L   P
Sbjct: 358 RTGRAGRSGQALLFVAP 374


>gi|330952956|gb|EGH53216.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae Cit 7]
          Length = 442

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 121/283 (42%), Gaps = 27/283 (9%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHII 379
           +A+++AP   LA Q +E I++Y ++  +      G +   PQ  + +    +       +
Sbjct: 76  RALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVLVATPGRL 135

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP---HVLLMTATPIP- 432
           +  H   Q+++++ +L  +I+DE  R    G  + L+    A  P     LL +AT    
Sbjct: 136 LDLHR--QNAVKFSQLQTLILDEADRMLDLGFAEELRGIY-AVLPKQRQTLLFSATFSDE 192

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L    L D    +++ +      +K  ++ +++      +  + +   KK  W    
Sbjct: 193 IRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKK----RKADLFIHLMKKHRWGQVL 248

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +  K       +V+R  +L  +       IHG      ++  +D FK+   K+L+AT V 
Sbjct: 249 VFAKTRVGVDQLVDRLQALGMNADG----IHGDKPQATRQRALDRFKSNEVKILVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
             G+D+ D   ++  +        +H++ GR GR    GE IS
Sbjct: 305 ARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGLTGEAIS 346


>gi|330794390|ref|XP_003285262.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
 gi|325084804|gb|EGC38224.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
          Length = 2292

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           +D FKNG+C++LIAT V+E GID+ +  ++I  ++  + +  L Q RGR
Sbjct: 465 VDDFKNGSCEILIATNVLEEGIDIPECKLVICFDS-IYSVRSLIQRRGR 512


>gi|320166584|gb|EFW43483.1| Ddx52 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 256

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 4/118 (3%)

Query: 500 FRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F   V+R   LH        ++ +IH   + +++E+ + +F+ G    LIAT ++  G+D
Sbjct: 38  FVQSVDRAKQLHREMLYEKMNVDVIHAERTSLERETAIKNFRTGKTWFLIATELLARGMD 97

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
               +++I  +      + +H++ GR GR       I  +    S N  T ++V+K +
Sbjct: 98  FKGVNLVINFDFPQTAESYIHRI-GRTGRAGRPGEAITFFTKEDSINLRTVVNVMKES 154


>gi|291001219|ref|XP_002683176.1| predicted protein [Naegleria gruberi]
 gi|284096805|gb|EFC50432.1| predicted protein [Naegleria gruberi]
          Length = 455

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 124/306 (40%), Gaps = 61/306 (19%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    +AM  AV+      QA+ + P   LA Q Y  +K   Q+T I  +
Sbjct: 97  IAQSQSGTGKTACFGLAMLQAVDESVNSTQAICICPALELATQIYSVVKGLGQHTGI--K 154

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGV 408
           I      Q   R   +       HI+IGT     +     SI    + ++ VDE  +   
Sbjct: 155 IYAALKGQEIPRNLTD-------HIVIGTPGTVNEMIRRRSINTKTVKILAVDEADQMLE 207

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG---DIDISKITEKPAG---------RK 456
           +   +L  +     +L+    P    ++L S     + D  +  EK             +
Sbjct: 208 EGNSQLRDQT----ILIKKGLPEKCRVLLFSATFKEEDDDKEGAEKEKKVLDFAEKVVPQ 263

Query: 457 PIKTVIIP-------------INRIDE-----VIERLKVVLSEGKKAYWICPQIEEKKES 498
           P+KT++IP             +  +DE     VI+ +   L  G+   ++          
Sbjct: 264 PLKTILIPKEKLTLKHMKQFVVKCVDETQKIQVIKDIYETLKVGQSIIFV---------- 313

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           N ++  E+  ++ +    ++++ HG +    ++ VM  F  GT K+LI T V+  G+D+ 
Sbjct: 314 NSKNYAEKLANVLQENKFTVSVTHGGLDPEVRKKVMSEFVAGTAKVLITTNVLARGVDIA 373

Query: 559 DASIII 564
             + +I
Sbjct: 374 TVTHVI 379


>gi|262403813|ref|ZP_06080371.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
 gi|262350317|gb|EEY99452.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
          Length = 421

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 60/287 (20%), Positives = 115/287 (40%), Gaps = 24/287 (8%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I T
Sbjct: 83  RALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQLNHL----RGGVDILIAT 138

Query: 383 HALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      L L     +++DE  R      +   Q+      +L   +P+ +TL  
Sbjct: 139 PGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR------VLRRLSPLRQTLFF 192

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  I  +  +   R P +  + P N   E ++++   + + +K   +   I  K  
Sbjct: 193 SATFDSKIKAVAYRIM-RDPAEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNW 251

Query: 498 SN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F    +  ++L E           I+G  S   ++  +D FK G  + LIAT V 
Sbjct: 252 QQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVA 311

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYH 597
             G+D+     ++  +        +H++ GR GR   +   + LL H
Sbjct: 312 ARGLDIAQLEQVVNYDMPFKAEDYVHRI-GRTGRAGLVGLAVSLLSH 357


>gi|228958720|ref|ZP_04120433.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800935|gb|EEM47839.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 458

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|229044202|ref|ZP_04191878.1| ATP-dependent RNA helicase [Bacillus cereus AH676]
 gi|229145047|ref|ZP_04273440.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24]
 gi|228638368|gb|EEK94805.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24]
 gi|228725143|gb|EEL76424.1| ATP-dependent RNA helicase [Bacillus cereus AH676]
          Length = 458

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|229178806|ref|ZP_04306167.1| ATP-dependent RNA helicase [Bacillus cereus 172560W]
 gi|228604682|gb|EEK62142.1| ATP-dependent RNA helicase [Bacillus cereus 172560W]
          Length = 458

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPDSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFIMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNFDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|218530745|ref|YP_002421561.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218523048|gb|ACK83633.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 510

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 5/78 (6%)

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A IHG  S   +E  + +F++G+C++L+AT +   GIDV   + ++  +  +   + +H+
Sbjct: 273 AAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGIDVDGVTHVVNYDLPNVPESYVHR 332

Query: 579 LRGRVGR----GEEISSC 592
           + GR  R    G+ IS C
Sbjct: 333 I-GRTARAGAEGQAISFC 349


>gi|148826626|ref|YP_001291379.1| prolyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|148716786|gb|ABQ98996.1| prolyl-tRNA synthetase [Haemophilus influenzae PittEE]
          Length = 615

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 99/243 (40%), Gaps = 50/243 (20%)

Query: 380 IGTHALFQDSIQYYKLILVIVDEQH---RFGVQQRLKLTQ----KATAPH--VLLMTATP 430
           + T++ FQ  I Y K+  + +DE H   ++G   R + TQ    KA+ P   ++ +TAT 
Sbjct: 129 VMTNSFFQ-LISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATA 187

Query: 431 -------IPRTLVLTSL----GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
                  I R L L +L    G  D      +P  R  ++    P+ ++        V+ 
Sbjct: 188 DYATQQDILRHLNLKNLHKYIGSFD------RPNIRYTLEEKYKPMEQLTRF-----VLA 236

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +GK     C         N R+ VER      +   S A  H  M    ++ V   F+ 
Sbjct: 237 QKGKSGIIYC---------NSRNKVERITESLRNKGVSAAAYHAGMETARRDRVQQDFQR 287

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILL 595
              ++++AT    +GI+  +   +      HF L +     +Q  GR GR +  +  +L 
Sbjct: 288 DNVQVVVATIAFGMGINKSNVRFV-----AHFDLPRSIESYYQETGRAGRDDLPAEAVLF 342

Query: 596 YHP 598
           Y P
Sbjct: 343 YEP 345


>gi|152975569|ref|YP_001375086.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152024321|gb|ABS22091.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 434

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 120/280 (42%), Gaps = 34/280 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQII-V 352
           I Q   G+GKTL  ++ +   ++      QA+I+AP   LA Q    IKK   + Q I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILENIDPNASDIQALIVAPTRELALQITTEIKKMLVHKQDIHV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             I G      + K L+    G  HI++ T     D ++   ++L     V++DE     
Sbjct: 106 LAIYGGQDVEQQMKKLK----GNTHIVVATPGRLLDHLRRETIVLSNVSMVVLDE----- 156

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
             Q L         H+L  T     +T++ ++    DI K+    A R   +  +I I  
Sbjct: 157 ADQMLHFGFLYDIEHILEETPEN-KQTMLFSATMPKDIKKL----AKRYMKEPQVIQIQS 211

Query: 468 IDEVIERLKV-VLSEGKKAYWICPQIEEKKESNF---------RSVVERFNSLHEHFTSS 517
            +  +E +K  V+    +A     +   +++  F         R V + F +L + +  +
Sbjct: 212 AEVTVENIKQRVIETTDRAKQDALRYVMERDQPFLAVIFCRTKRRVTKLFTAL-KGYGYN 270

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +HG +S   +E VM +F+    + LIAT V   G+DV
Sbjct: 271 CDELHGDLSQAKRERVMKNFREAKIQYLIATDVAARGLDV 310


>gi|332703129|ref|ZP_08423217.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553278|gb|EGJ50322.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 532

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 133/313 (42%), Gaps = 49/313 (15%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYE---FIKKYTQNTQIIV 352
           Q   G+GKT    I +  AV+      QA+++ P   LA Q  E    + KY  N +++ 
Sbjct: 47  QAQTGTGKTAAFGIPILEAVDPRSHDLQALVLCPTRELAIQVAEELNTLAKYKLNLRVLP 106

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF- 406
             + G  P   + KAL +       I+IGT     D     +++  K+ +V++DE     
Sbjct: 107 --VYGGQPIDRQFKALRQ----GVQIVIGTPGRVMDHMERGTLKLGKVRMVVLDEADEML 160

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
             G ++ ++  L         +  +AT  P  + L         K  +KP   K    V+
Sbjct: 161 DMGFREDIERILDDVPEERQTIFFSATMRPEIMRLAE-------KYLDKPEFVKVSHKVL 213

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIE---EKKESNFRSVVERFNSLHEHFTSSIA 519
              N     +E++   +    +   +C  I+    K    F +  +  + L EH  +   
Sbjct: 214 TVPN-----VEQIYYEVPRFGRLEAMCRIIDFYNPKLTVVFANTKKGVDELVEHLQARGY 268

Query: 520 I---IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFG 572
           +   +HG M+   ++ VM  F+ G+ ++LIAT V   GIDV D   +    I  + E++ 
Sbjct: 269 MADGLHGDMNQAQRDRVMAKFRAGSIEILIATDVAARGIDVEDIEAVFNYDIPSDVEYY- 327

Query: 573 LAQLHQLRGRVGR 585
              +H++ GR GR
Sbjct: 328 ---VHRI-GRTGR 336


>gi|332074076|gb|EGI84554.1| primosomal protein N [Streptococcus pneumoniae GA41301]
          Length = 798

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|311771467|dbj|BAJ25759.1| vasa [Pagrus major]
          Length = 631

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 68/339 (20%), Positives = 139/339 (41%), Gaps = 68/339 (20%)

Query: 302 VGSGKTLVALIA-----MAAAVEAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            GSGKT   L+      MA  V A         +A+I+AP   L  Q Y   +K+   T 
Sbjct: 242 TGSGKTAAFLLPILQQLMADGVAASSFSELQEPEAIIVAPTRELINQIYLEARKFAYGTC 301

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH 404
           +   ++ G +   ++ + L R      +++ GT     D I   K+ L     +++DE  
Sbjct: 302 VRPVVVYGGVSTGYQIRELCR----GCNVLCGTPGRLMDVIGRGKVGLSKLRYLVLDEAD 357

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATP-IP-----RTLVLTSLGDIDISKITEK------- 451
           R        +      P +  +  +P +P     +TL+ ++    DI ++          
Sbjct: 358 R--------MLDMGFEPAMRRLVGSPGMPSKENRQTLMFSATYPDDIQRMGADFLKTDYL 409

Query: 452 -------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
                   A    ++   + + +  +  + L ++ + G +   +   +E K++++F   +
Sbjct: 410 FLAVGVVGAACNDVEQTFVQVTKFSKREQLLDLLKTTGTERTMVF--VETKRQADF---I 464

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             +    +  T+SI   HG     ++E  +  F++G C +++AT+V   G+D+ D   ++
Sbjct: 465 ATYLCQEKVPTTSI---HGDREQRERELALADFRSGKCPVMVATSVAARGLDIPDVQHVV 521

Query: 565 IENAEHFGLAQ-----LHQLRGRVGRGEEISSCILLYHP 598
                +F L +     +H++ GR GR       +  Y P
Sbjct: 522 -----NFDLPKDIDEYVHRI-GRTGRCGNTGRAVSFYDP 554


>gi|309774568|ref|ZP_07669594.1| ATP-dependent RNA helicase, DEAD/DEAH family [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917683|gb|EFP63397.1| ATP-dependent RNA helicase, DEAD/DEAH family [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 585

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 136/309 (44%), Gaps = 39/309 (12%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEI 354
           + + G+GKT    I     V  G +   A+I+ P   L  Q    ++K+++  + + +  
Sbjct: 45  RSNTGTGKTAAFGIPAIEKVCQGTRNPNALIICPTRELVTQVATELRKFSKYKEGVKIVP 104

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQ 409
           I G  P   + + L+R       I++GT     D +    L L     VI+DE       
Sbjct: 105 IYGGQPIDRQIQLLKR----GCGIVVGTPGRIMDHLNRRTLKLDDTNMVILDE-----AD 155

Query: 410 QRLKLTQKATAPHVL-LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           + L +  K     +L +M      +T++ ++    +I +IT K     P++  I    R 
Sbjct: 156 EMLNMGFKEDIEEILSMMPEGNEHQTVLFSATWPAEILRIT-KQFQNDPVRVEIKSSQRT 214

Query: 469 DEVIERLKVVLSEGKKAYWI-------CPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            + +E++      GKKA  +        P +     +  + V E  + L++H   +I++ 
Sbjct: 215 IDTVEQIYYEAPRGKKANALRVLLSHYDPDLCMIFCNTKKMVDELCDELNKHDIKAISL- 273

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-----L 576
           HG M    +  VM+ F++G   +LIAT V   GIDV D  +++     +F + Q     +
Sbjct: 274 HGDMKQEFRSRVMEQFRSGNYPILIATDVAARGIDVDDIDLVV-----NFDIPQDNEYYI 328

Query: 577 HQLRGRVGR 585
           H++ GR GR
Sbjct: 329 HRV-GRTGR 336


>gi|259416782|ref|ZP_05740702.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B]
 gi|259348221|gb|EEW59998.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B]
          Length = 490

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 151/374 (40%), Gaps = 52/374 (13%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------L 308
           +N+  K+ + I      SPT  Q  AI   L+       +L I Q   G+GKT      +
Sbjct: 7   LNLNPKVLKAIEEAGYESPTPIQAGAIPAALEGRD----VLGIAQ--TGTGKTASFTLPM 60

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           +  +A   A     +++++ P   LA Q  E    Y ++ ++   ++ G +    +  A+
Sbjct: 61  ITRLARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDAAI 120

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQ 416
           +R       ++I T     D  +  KL+L     ++VDE  R         +++   LT 
Sbjct: 121 DR----GVDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTP 176

Query: 417 KATAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKTVII--PINRID-EV 471
                  L  +AT  P    +T+  L   +  +I  +    + I+  ++    +R D E 
Sbjct: 177 FTR--QTLFFSATMAPEIERITNTFLSGPERVEIARQATTSETIEQAVVMFKASRKDREG 234

Query: 472 IERLKV----VLSEG---KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
            E+ +V    +  EG   K A   C         N ++ V+      + +    A IHG 
Sbjct: 235 SEKRRVLRELINQEGEAVKNAIIFC---------NRKTDVDIVAKSLKKYGYDAAPIHGD 285

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +    +   +D F++GT K+L+A+ V   G+DV   S +   +        +H++ GR G
Sbjct: 286 LDQSQRTKTLDGFRDGTLKILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRI-GRTG 344

Query: 585 RGEEISSCILLYHP 598
           R       I L  P
Sbjct: 345 RAGRNGKAITLCSP 358


>gi|261346860|ref|ZP_05974504.1| primosomal protein [Providencia rustigianii DSM 4541]
 gi|282565040|gb|EFB70575.1| primosomal protein [Providencia rustigianii DSM 4541]
          Length = 732

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ +   + V+++
Sbjct: 221 LLAGITGSGKTEVYLSVLENILAKGKQALVLVPEIGLTPQT----INRFRERFNVPVDVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   G   IIIGT  ALF     +  L ++I+DE+H    +Q+
Sbjct: 277 HSALNDSERLAVWLRAKQGSNGIIIGTRSALF---TPFAHLGIIIIDEEHDSSYKQQ 330


>gi|223590230|sp|A5DQS0|DED1_PICGU RecName: Full=ATP-dependent RNA helicase DED1
          Length = 637

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 119/300 (39%), Gaps = 49/300 (16%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A++MAP   L  Q +E  KK++  + +   ++ G      + + L+R       +++ T 
Sbjct: 255 ALVMAPTRELVSQIFEEAKKFSYRSWVRPCVVYGGADIGTQIRNLDR----GCDLLVATP 310

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF-------------------GVQQRLKLTQKAT 419
              +D ++  ++ L     +++DE  R                    GV+ R  L   AT
Sbjct: 311 GRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVESRQTLMFSAT 370

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDIS--KITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            P  + M A    +  +  S+G +  +   IT+K           +     DE    L  
Sbjct: 371 FPRDIQMLARDFLKDYIFLSVGRVGSTSENITQK-----------VLYVEDDEKKSVLLD 419

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           +LS       I     ++   N          L++    + AI HG  S  ++E  + +F
Sbjct: 420 LLSANDNGLTIIFTETKRMADNLADF------LYDQGFPATAI-HGDRSQYEREKALAAF 472

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+GT  +L+AT V   G+D+ + S ++  +        +H++ GR GR   +      ++
Sbjct: 473 KSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRI-GRTGRAGNVGIATAFFN 531


>gi|187929488|ref|YP_001899975.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12J]
 gi|187726378|gb|ACD27543.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
          Length = 493

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 120/296 (40%), Gaps = 37/296 (12%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q Y+ + KY + T +   ++ G +    + + L R       I++ T
Sbjct: 91  RALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRR----GVEILVAT 146

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLV 436
                D     S+   ++ ++++DE  R      L   Q+       ++   P  R TL+
Sbjct: 147 PGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQR-------IINLLPAHRQTLL 199

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I ++      R P    +   N   E + ++   + +  K   +   + ++ 
Sbjct: 200 FSATFSPEIKRLAAS-YLRHPQTIEVARSNATAENVRQVIYTVPDNHKQAALVHLLRQRA 258

Query: 497 E----------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E          SN +    R     E    +   IHG  +  ++   +++FK GT  +L+
Sbjct: 259 EQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGTVDVLV 318

Query: 547 ATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT V   G+D+     +I      NAE +    +H++ GR GR       + L+ P
Sbjct: 319 ATDVAARGLDISQMPCVINFDLPFNAEDY----VHRI-GRTGRAGASGDALSLFAP 369


>gi|154247132|ref|YP_001418090.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154161217|gb|ABS68433.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 559

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 126/292 (43%), Gaps = 41/292 (14%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER------IAHGQA 376
           +A++++P   L+ Q  E  +K+ ++  I V +  G +P   + +AL R         G+ 
Sbjct: 112 RALVLSPTRELSGQIVENFEKFGRHANISVSLAIGGVPMGRQIRALSRGVDVLVATPGRL 171

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK-----LTQKATAPHVLLMTATPI 431
             ++  HA+  D ++   L+L   D+    G    ++     L  K    H L  +AT  
Sbjct: 172 IDLVENHAVKLDQVEV--LVLDEADQMLDMGFVHAIRAIVRRLPHKR---HSLFFSAT-- 224

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
               +  ++ ++  S +      R P++  + P+ +  + +E+  +++ +  K   +  +
Sbjct: 225 ----MPHAIAELAGSML------RDPVRVAVTPVAKTADRVEQRVILVDKANKGQLLA-E 273

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIA-------IIHGRMSDIDKESVMDSFKNGTCKL 544
           +   ++ +   V  R     +     +A        IHG  S   ++ V+ +F+ G  + 
Sbjct: 274 VLSTEDIDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIRT 333

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           LIAT +   GIDV   S +I  +  +   + +H++ GR  R    G  IS C
Sbjct: 334 LIATDIAARGIDVTGVSHVINFDLPNVPESYVHRI-GRTARAGREGIAISFC 384


>gi|87122371|ref|ZP_01078252.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Marinomonas sp. MED121]
 gi|86162346|gb|EAQ63630.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Marinomonas sp. MED121]
          Length = 432

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 129/300 (43%), Gaps = 51/300 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAA-----AVEAG-----GQAVIMAPIGILAQQHYEFIKKYTQ 346
           I Q   G+GKT   LIAM +      +E        + +I+AP   LA Q  E   K T 
Sbjct: 94  IGQAQTGTGKTAAFLIAMISDFIDYPIEEERDSRLARGLIIAPTRELALQIAEDAVKLTV 153

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVD 401
           N+ I +  + G +    +++ LE   + +  I++ T     D  +  K++L     +++D
Sbjct: 154 NSDINIVSLVGGLSYEKQKQILE---NERVDIVVATPGRLMDFARNKKVLLNKVEALVLD 210

Query: 402 EQHRF-------GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           E  R         V+  +++T        +L +AT  P+          DI  +  +   
Sbjct: 211 EADRMLSMGFIPDVKSIIRMTPHKEKRQTMLFSAT-FPK----------DIQNLA-RQWT 258

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE--KKESNFRSVV-----ERF 507
             P +  ++P    ++ IE  +V+ S      W  P +E   K++ N R++V     +  
Sbjct: 259 YFPKEVSVVPEETTNKNIE--QVIYSVEADQKW--PVLESLIKEKDNQRTIVFANRRDET 314

Query: 508 NSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             L+E    +    A++ G ++   +   + +FKNG  ++L+AT V   GI V    +++
Sbjct: 315 RDLYERLKDAGVNCAMLSGEVAQDKRVKTLANFKNGKIQVLVATDVAGRGIHVDGIELVV 374


>gi|322493239|emb|CBZ28524.1| putative DEAD box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 389

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 122/314 (38%), Gaps = 48/314 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + +  A +      QA+I++P   LA Q  +       +  +   
Sbjct: 58  IAQASSGTGKTSAFCVCLLQACDPHTREAQALILSPTRELAVQTQDLCNNIGHHMGLTAY 117

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
              G        + LE       HII GT     D I+           L+L   DE   
Sbjct: 118 ACIGGKSTEEDIRRLE----SGVHIISGTPGRVFDMIRRKSLRVNGLKTLVLDEADEMLG 173

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK----PAGRKPIKTV 461
            G + ++    +   P  +++ +  +P           D+ ++TEK    PA        
Sbjct: 174 KGFKAQIHDIYRMVPPLQIILVSATLP----------ADVLEMTEKFMTEPAS------- 216

Query: 462 IIPINRIDEVIERLK---VVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLH 511
            I + R +  ++ +K   V + E K  + +  ++ +           N R  VE+     
Sbjct: 217 -ILVKRDEITVDSVKQYFVSVDEEKNKFDVLMELYDSLTIAHAVVFCNTRKKVEQLAKKM 275

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                ++  +HG M   +++ +M  F+NG  ++LI T +   GIDV   S+++  +    
Sbjct: 276 TREKFAVTAMHGDMPQAERDEIMRQFRNGHSRVLITTDLWARGIDVERVSLVLSYDLPLS 335

Query: 572 GLAQLHQLRGRVGR 585
               +H++ GR GR
Sbjct: 336 REQYIHRI-GRTGR 348


>gi|226313946|ref|YP_002773842.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226096896|dbj|BAH45338.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 493

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 151/351 (43%), Gaps = 33/351 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT+ QE AI  I++          I Q   G+GKT   ++ +  A++ G    QA+I+ P
Sbjct: 26  PTQIQEEAIPLIMEGKD------LIGQAQTGTGKTAAFMLPILNALDEGKRDIQALILTP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              L+ Q  + ++K  ++  + V  + G      +   L+        I++GT     D 
Sbjct: 80  TRELSIQIAKEVEKLGKHLNVNVLSLHGGTDIDKQLSKLKETVQ----IVVGTPGRVLDH 135

Query: 389 ----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
               S+ + ++  +++DE  +      L+  ++       ++  TP  R ++L S    D
Sbjct: 136 MKRGSLHFGRISTLVLDEADKMMEMGFLEDVEQ-------VIVHTPSQRQVLLFSATMPD 188

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------S 498
           + K       ++P    I    +  E IE+   V+++  K   +   +E+++       +
Sbjct: 189 LVKKLAHRFMKQPPHIKIEGKQKTVERIEQFYYVVNQSDKTDALVDVLEQEQPFLTIVFA 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           N +  V++  +  +    S   ++G +S   +E +M  F+    + LIAT +   G+DV 
Sbjct: 249 NTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQFLIATDIAARGLDVE 308

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
             + +I  +  +   + +H++ GR GR  +    I L   P  KN   R +
Sbjct: 309 GVTHVINYDLPNDVDSYIHRV-GRTGRAGQKGKAISLI-SPRQKNLMARFA 357


>gi|225861558|ref|YP_002743067.1| primosome assembly protein PriA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230280|ref|ZP_06963961.1| primosome assembly protein PriA [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298254899|ref|ZP_06978485.1| primosome assembly protein PriA [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503482|ref|YP_003725422.1| primosomal replication protein N [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727846|gb|ACO23697.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae Taiwan19F-14]
 gi|298239077|gb|ADI70208.1| primosomal replication protein N [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389921|gb|EGE88266.1| primosomal protein N' [Streptococcus pneumoniae GA04375]
          Length = 798

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|168056517|ref|XP_001780266.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668320|gb|EDQ54930.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 397

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 131/312 (41%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT +  +A+   ++      QA+I++P   LA Q  + I        +   
Sbjct: 65  IAQAQSGTGKTSMIALAVCQMIDTATREVQALILSPTRELAAQTEKVILAIGDFMNVQAH 124

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRF-- 406
              G        + LE   +G  H++ GT     D I+   L      L+I+DE      
Sbjct: 125 ACIGGKSIGEDIRKLE---YG-VHVVSGTPGRVYDMIKRRTLRTRSIKLLILDESDEMLS 180

Query: 407 -GVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++    +   P   V+L++AT     L +T+       K    P        V I
Sbjct: 181 RGFKDQIYDVYRYLPPELQVVLVSATLPHEILEMTN-------KFMTDP--------VRI 225

Query: 464 PINRIDEVIERLKVVLSEGKKAYW----ICPQIEEKKESN---FRSVVERFNSLHEHFTS 516
            + R +  +E +K      ++  W    +C   +    +    F +   + + L E   S
Sbjct: 226 LVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRS 285

Query: 517 ---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++ +HG M   +++++M  F++GT ++LI T V   G+DV   S++I  +  +   
Sbjct: 286 NNFTVSAMHGDMPQKERDAIMAEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRE 345

Query: 574 AQLHQLRGRVGR 585
             +H++ GR GR
Sbjct: 346 LYIHRI-GRSGR 356


>gi|148984180|ref|ZP_01817475.1| primosome assembly protein PriA [Streptococcus pneumoniae SP3-BS71]
 gi|147923469|gb|EDK74582.1| primosome assembly protein PriA [Streptococcus pneumoniae SP3-BS71]
 gi|301800541|emb|CBW33181.1| putative primosomal protein N' [Streptococcus pneumoniae OXC141]
          Length = 798

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRARYNQATLVLGS 420


>gi|27545267|ref|NP_775365.1| ATP-dependent RNA helicase DDX19B [Danio rerio]
 gi|20977593|gb|AAM28224.1| DEAD box RNA helicase [Danio rerio]
          Length = 487

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 148/375 (39%), Gaps = 73/375 (19%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+K QE+A+  +L +  Q      I Q    +GKT   ++AM + V+      + + + P
Sbjct: 123 PSKIQETALPMMLAEPPQN----LIAQSQSRTGKTAAFVLAMLSHVDTENKWPECLCVCP 178

Query: 330 IGILAQQHYEFIK---KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
              LA Q  + I+   K+    Q++  I         R   LER A  Q  I+IGT    
Sbjct: 179 TYELALQTGKVIEQMGKHYPEVQLVYAI---------RGNKLERGAKLQEQIVIGTPGTV 229

Query: 387 QDSIQYYKLI------LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            D  Q  K I      + ++DE         +  TQ      V +    P    ++L S 
Sbjct: 230 LDWCQKLKFIDPKKIKVFVLDEADV------MIATQGHQDQSVRIQRMLPKTCQMLLFS- 282

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
                 +     A R      II + R +E ++ +K       + Y IC   EEK    F
Sbjct: 283 --ATFEETVWNFAKRIVPDPNIIKLKREEETLDTIK-------QYYVICNSKEEK----F 329

Query: 501 RSVVERFNSL---------HEHFTSS------------IAIIHGRMSDIDKESVMDSFKN 539
           +++   + ++         H   T+             +A++ G M    + +V++ F++
Sbjct: 330 QALCNIYGAITIAQAMIFCHTRKTAGWLAGELSREGHQVALLSGEMQVEQRAAVIERFRD 389

Query: 540 GTCKLLIATTVIEVGIDVVDASIII------IENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           G  K+L+ T V   GIDV   S++I       ++        LH++ GR GR  +    I
Sbjct: 390 GKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI-GRTGRFGKRGLAI 448

Query: 594 LLYHPPLSKNSYTRL 608
            +     S N+  R+
Sbjct: 449 NMADSKFSMNTLNRI 463


>gi|15903623|ref|NP_359173.1| primosome assembly protein PriA [Streptococcus pneumoniae R6]
 gi|116516961|ref|YP_816999.1| primosome assembly protein PriA [Streptococcus pneumoniae D39]
 gi|15459247|gb|AAL00384.1| Primosomal replication factor Y [Streptococcus pneumoniae R6]
 gi|116077537|gb|ABJ55257.1| primosomal protein N' [Streptococcus pneumoniae D39]
          Length = 798

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|50547433|ref|XP_501186.1| YALI0B21538p [Yarrowia lipolytica]
 gi|74660084|sp|Q6CDS6|ROK1_YARLI RecName: Full=ATP-dependent RNA helicase ROK1
 gi|49647052|emb|CAG83439.1| YALI0B21538p [Yarrowia lipolytica]
          Length = 547

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG M+   + SV+D F+NG   +LI T V+  GID    +++I  +      + +H++ 
Sbjct: 394 IHGDMTAAKRASVIDRFRNGEVWVLICTDVLARGIDFRGINLVINYDVPQSAQSYVHRI- 452

Query: 581 GRVGRGEEISSCILLY 596
           GR GR   +   +  +
Sbjct: 453 GRTGRAGRLGKAVTFF 468


>gi|313635865|gb|EFS01841.1| ATP-dependent DNA helicase RecQ [Listeria seeligeri FSL S4-171]
          Length = 591

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNF-----RSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            +VV  + K  Y +    + K ES       R  VER ++          + HG MSDI 
Sbjct: 208 FQVVKGQDKDKYLMDYLTKNKTESGIVYASTRKEVERLHAFLLKKGVEAGMYHGGMSDIA 267

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +    + F     ++++AT    +GI+  +   +I  N     +   +Q  GR GR    
Sbjct: 268 RRDWQEKFLYDDIRVIVATNAFGMGINKSNVRFVIHYNIPR-NIEAYYQEAGRAGRDGVP 326

Query: 590 SSCILLYHPPLSK 602
           S CILL+ P  S+
Sbjct: 327 SDCILLFSPQDSR 339


>gi|288904705|ref|YP_003429926.1| primosomal replication factor Y [Streptococcus gallolyticus UCN34]
 gi|288731430|emb|CBI12982.1| primosomal replication factor Y [Streptococcus gallolyticus UCN34]
          Length = 796

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 8/135 (5%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQ 335
           Q + ++ +   + Q+++   +L+G  GSGKT V L  +   ++ G  A+++ P I +  Q
Sbjct: 264 QAAVVEQVTSQIGQESKPF-LLEGVTGSGKTEVYLHIIDKVLKLGKTAIVLVPEISLTPQ 322

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
               FI ++ +     V I+   +    +     +I  GQAH+++G  +     I+   +
Sbjct: 323 MTNRFISRFGKQ----VAIMHSALSDGEKFDEWRKIKSGQAHVVVGARSAIFVPIE--NI 376

Query: 396 ILVIVDEQHRFGVQQ 410
             +I+DE+H    +Q
Sbjct: 377 GAIIIDEEHEATYKQ 391


>gi|283779557|ref|YP_003370312.1| DEAD/DEAH box helicase domain-containing protein [Pirellula staleyi
           DSM 6068]
 gi|283438010|gb|ADB16452.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
          Length = 813

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 18/178 (10%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           +IA + L ++P+ P   QE AI   L   +    +L  +    G+GKTL+A  A+  A+ 
Sbjct: 9   EIASRYLDSLPYPPYPVQEEAI---LTYFTSDQGVL--VSAPTGTGKTLIAEAALFEALH 63

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQN---TQIIVEIITGNMPQAHRRKALERIAHGQA 376
            G QA    P+  L +Q +  ++        +   V ++TGN     + K L  +A    
Sbjct: 64  TGKQAYYTTPLIALTEQKFADVQASAVRWGFSADDVGLVTGNRRVNPQAKILVVVAE--- 120

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR---LKLTQKATAPHV--LLMTAT 429
             I+    L +++  +  +  V++DE H F   +R    +L+      HV  LL++AT
Sbjct: 121 --ILLNRLLHKEAFDFADVSAVVMDEFHSFADTERGMVWELSLGLLPAHVRLLLLSAT 176


>gi|228998644|ref|ZP_04158231.1| Primosomal protein N' [Bacillus mycoides Rock3-17]
 gi|229006145|ref|ZP_04163832.1| Primosomal protein N' [Bacillus mycoides Rock1-4]
 gi|228755098|gb|EEM04456.1| Primosomal protein N' [Bacillus mycoides Rock1-4]
 gi|228761112|gb|EEM10071.1| Primosomal protein N' [Bacillus mycoides Rock3-17]
          Length = 767

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q   I  IL  ++ +     +L G  GSGKT V L ++AA ++ G +A+++ P
Sbjct: 228 PFPLTDEQNQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLKKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++     ++   ++        RK L +    +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQVAVLHSALSVGEKYDEWRKILRK----EVKVVVGARSAIFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|229190613|ref|ZP_04317610.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876]
 gi|228592958|gb|EEK50780.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876]
          Length = 458

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPDSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFIMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNFDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|225855167|ref|YP_002736679.1| primosome assembly protein PriA [Streptococcus pneumoniae JJA]
 gi|225723375|gb|ACO19228.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae JJA]
          Length = 798

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|281422527|ref|ZP_06253526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
 gi|281403351|gb|EFB34031.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
          Length = 568

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 138/347 (39%), Gaps = 48/347 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL+       +L + Q   G+GKT   L+ + + ++ GG        VIM
Sbjct: 25  TPVQEKCIPEILEGHD----VLGVAQ--TGTGKTAAYLLPVLSKLDDGGYPKDAINCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA--- 384
           +P   LAQQ  + ++ +    Q +  +        +R     R     A ++I T     
Sbjct: 79  SPTRELAQQIDQAMQGFGYYLQGVSSVAVYGGNDGNRYDQELRSLRMGADVVIATPGRLI 138

Query: 385 --LFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
             +   ++   K+   I+DE  R    G  + +K              A+ +P+T     
Sbjct: 139 SHISLGNVDLSKVSFFILDEADRMLDMGFSEDIK------------TIASKLPKTCQTIM 186

Query: 440 LGDIDISKITE--KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                  KI E  K   + P++ + + +++  E I++   V  E +K   I       K 
Sbjct: 187 FSATMPEKIEELAKTLLKNPVE-IKLAVSKPAEKIKQEAYVCYETQKMTIIKDIF---KA 242

Query: 498 SNFRSV---------VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            + + V         V++  +  +    +   +H  +   +++ VM  FK+G   +L+AT
Sbjct: 243 GDLKRVIVFSGSKFKVKQLAASLQQIGVNCGAMHSDLEQAERDDVMFKFKSGQYDVLVAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            ++  GID+ D  ++I  +  H     +H++ GR  R       I  
Sbjct: 303 DIVARGIDIDDIEMVINYDVPHDTEDYVHRI-GRTARANRDGRAITF 348


>gi|242310406|ref|ZP_04809561.1| exinuclease abc subunit b [Helicobacter pullorum MIT 98-5489]
 gi|239522804|gb|EEQ62670.1| exinuclease abc subunit b [Helicobacter pullorum MIT 98-5489]
          Length = 658

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 81/182 (44%), Gaps = 19/182 (10%)

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG-RKPIKTVIIPINRIDEVIERLKVV 478
           APH L ++ATP  + L L+      I++   +P G   PI  V+   N+++ + +  K V
Sbjct: 388 APHFLFVSATPAQKELELSK---NHIAEQLIRPTGLLDPIYEVLSVENQVEVLYDEAKKV 444

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++ G+K             S  + + E     +      +  +H  +  I++  ++   +
Sbjct: 445 IARGEKVLVT---------SLTKKMAEELTRYYSDLGLKVRYMHSEIDAIERNQIIRGLR 495

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL----AQLHQLRGRVGRGEEISSCIL 594
            G   +L+   ++  G+D+ + S++ I +A+  G       L Q  GR  R   ++  +L
Sbjct: 496 VGEFDILVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGRAARN--VNGRVL 553

Query: 595 LY 596
           L+
Sbjct: 554 LF 555


>gi|215788934|gb|ACJ69403.1| Vasa [Botryllus schlosseri]
          Length = 547

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 152/377 (40%), Gaps = 69/377 (18%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           + Q +L++    PT  Q+ +I      +   NR L +     GSGKT   L+ + + +  
Sbjct: 103 VGQNVLKSGYEKPTPVQKYSIP-----IVNNNRDL-MACAQTGSGKTAAFLLPVLSGMFR 156

Query: 321 GG-------------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            G             QA+++ P   L  Q Y   +K+ + T I   ++ G       R  
Sbjct: 157 NGLKSADSFSESQTPQAIVVGPTRELVNQIYIEARKFARGTMIQPVVVYGG---TSVRSQ 213

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPH 422
           L  ++ G  +++I T     D I   K+       +I+DE  R        +      P 
Sbjct: 214 LANLSRG-CNMLIATPGRLLDFIDRGKVSCECVEYIILDEADR--------MLDMGFEPE 264

Query: 423 VLLMTATP-IP-----RTLVLTSLGDIDISKITEK---------PAGR-----KPIKTVI 462
           +  +   P +P      TL+ ++    DI K+  +           GR       +   +
Sbjct: 265 IRRLLGAPGMPDKNTRHTLMFSATSPDDIQKLAHEFLRDDFLFLTVGRVGGACSDVTQAM 324

Query: 463 IPIN---RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           I I+   + D+++E L  V +   +       ++ K+ ++F + +    +L    T+SI 
Sbjct: 325 IQIDHSEKRDKLMELLSDVPTTKARTLVF---VDTKRNADFLATLPSQENLP---TTSI- 377

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG     ++E  +  FKNGTC +LIAT+V   G+D+     +I  +        +H++
Sbjct: 378 --HGDRQQREREMALVDFKNGTCPILIATSVAARGLDIPKVEHVINYDLPSEIDEYVHRI 435

Query: 580 RGRVGRGEEISSCILLY 596
            GR GR   + +    Y
Sbjct: 436 -GRTGRCGNLGTATSFY 451


>gi|195978662|ref|YP_002123906.1| primosome assembly protein PriA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975367|gb|ACG62893.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 794

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 17/166 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L  +A  +E G  A+++ P I +  Q    FI ++ +     V I+
Sbjct: 281 LLEGITGSGKTEVYLHVIAHVLEQGKTAIVLVPEISLTPQITSRFISRFGRQ----VAIM 336

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH----------R 405
              +    +    ++I  GQA +++G  +     ++   +  +I+DE+H          R
Sbjct: 337 HSGLSDGEKFDEWQKIKTGQARVVVGARSAIFSPLE--NIGAIIIDEEHEATYKQESNPR 394

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  +    L  +     +++ +ATP   +    S G     K+TE+
Sbjct: 395 YHARDVALLRARHHKAALVMGSATPSIDSRARASKGLYQFIKLTER 440


>gi|169829133|ref|YP_001699291.1| ATP-dependent RNA helicase yqfR [Lysinibacillus sphaericus C3-41]
 gi|168993621|gb|ACA41161.1| Probable ATP-dependent RNA helicase yqfR [Lysinibacillus sphaericus
           C3-41]
          Length = 434

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 150/353 (42%), Gaps = 58/353 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMAP 329
           PT  Q+  I  IL+  S       I Q   G+GKT   LI +   ++   Q   AVI +P
Sbjct: 26  PTPIQKEIIPLILKGKSA------IGQAHTGTGKTHSFLIPIVQRIDVEKQEVQAVITSP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ Y+ + +  + T I  ++  G      ++++++++   Q  I++GT    +D 
Sbjct: 80  TRELAQQIYDALNQLIEGTAIQAKLFIGG---TDKQRSIDKL-KTQPQIVVGTPGRIRDL 135

Query: 390 IQYYKLI-----LVIVDEQH---RFGVQQRLK--LTQKATAPHVLLMTATPIPRTL--VL 437
           +    L      +++VDE       G  + +    +Q      + + +AT IP  L   L
Sbjct: 136 VSAQALFVHTAPILVVDEADLAFDMGFIEEIDGFASQMPEKLEMFVFSAT-IPEKLQPFL 194

Query: 438 TSLGDIDIS-KITEKPAGRKPIKTVIIPI------NRIDEVIERLKVVLSEGKKAYWICP 490
               D  +   + +K    + I  +++P+       R+ EVIE +   L+       I  
Sbjct: 195 KKYMDAPVHVHMNDKRPVAEGIDFMLVPVRSKSRNKRLLEVIEGINPFLA------VIF- 247

Query: 491 QIEEKKESNFRSVVERFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                  +N R   E     L+EH       IHG +S  D++ +M   ++   + ++AT 
Sbjct: 248 -------TNTRKSAEHVAGYLNEHGIRC-GQIHGDLSPRDRKKMMKQIRDLEYQYIVATD 299

Query: 550 VIEVGIDVVDASII----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +   GID+   S +    I E+ E F    +H++ GR  R     + I L+ P
Sbjct: 300 LAARGIDIQGISHVINYEIPEDLEFF----IHRV-GRTARAGNKGTAITLFEP 347


>gi|161527600|ref|YP_001581426.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160338901|gb|ABX11988.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus
           SCM1]
          Length = 913

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 167/397 (42%), Gaps = 56/397 (14%)

Query: 261 IAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           I + +  N  FS  T+ Q+ A   ILQ    K   L I     GSGKT  ++I + + ++
Sbjct: 13  IPESLFENFGFSNLTEIQKKASPIILQ----KKDCLVI--APTGSGKTECSVIPIFSLLK 66

Query: 320 AGGQ-----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER---- 370
              +      + + P+  L +  +  I KY   +++ +EI  G+  Q  R+K  E     
Sbjct: 67  NTKKPGKIKTLYITPLRALNRDVFRRITKYAHQSELSIEIRHGDTTQKDRKKITENPPDV 126

Query: 371 -IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL-LMTA 428
            I   +  +I+ T   + D+  + +L  ++VDE H     +R   TQ + +   L   + 
Sbjct: 127 LITTPETLVILLTQVKYLDA--FSELEWIVVDEVHELLSSERG--TQLSLSVERLEFNSE 182

Query: 429 TPIPRTLVLTSLGDIDIS-----------KITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            P+ +  +  ++G+ + +           +I    + RK    V      I +V E++  
Sbjct: 183 LPLTKIGLSATVGNFEEAGKFVVGTKRKCEIIRDTSVRKYDVEVKYVDGTISDVAEKIIE 242

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            +S       +      + ES F + +     L E     I + HG +S   +E    + 
Sbjct: 243 HVSNLNLDSPVLLFTNTRGESEFLASI-----LKEKSIIPIELHHGSLSKEVREETEQNL 297

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA-QLHQLRGRVGRGEEISSCILLY 596
           + G   +++ T+ +E+G+D+    ++I     H+G   Q+ +L  R+GR           
Sbjct: 298 REGKRGIVVCTSSLELGLDIGSVELVI-----HYGSPRQVSKLVQRIGRSRH-------- 344

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
               ++N+  +  ++ N  D    A+  L++ +EG I
Sbjct: 345 ----NRNASAKGLIITNNSDDEFEAQAILQRIQEGSI 377


>gi|16803286|ref|NP_464771.1| hypothetical protein lmo1246 [Listeria monocytogenes EGD-e]
 gi|224499083|ref|ZP_03667432.1| hypothetical protein LmonF1_05030 [Listeria monocytogenes Finland
           1988]
 gi|224501811|ref|ZP_03670118.1| hypothetical protein LmonFR_04752 [Listeria monocytogenes FSL
           R2-561]
 gi|284801628|ref|YP_003413493.1| hypothetical protein LM5578_1381 [Listeria monocytogenes 08-5578]
 gi|284994770|ref|YP_003416538.1| hypothetical protein LM5923_1334 [Listeria monocytogenes 08-5923]
 gi|16410662|emb|CAC99324.1| lmo1246 [Listeria monocytogenes EGD-e]
 gi|284057190|gb|ADB68131.1| hypothetical protein LM5578_1381 [Listeria monocytogenes 08-5578]
 gi|284060237|gb|ADB71176.1| hypothetical protein LM5923_1334 [Listeria monocytogenes 08-5923]
          Length = 470

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 129/313 (41%), Gaps = 37/313 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKT    I +A  VE      QA+I+ P   LA Q         +  ++   
Sbjct: 40  VAKSQTGSGKTAAFAIPIAEQVEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAA 99

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
            I G  P A ++  L +    + HI++GT     D I+           L+L  VDE   
Sbjct: 100 AIYGQSPFAKQKLELSQ----KNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLS 155

Query: 406 FGVQQRLK--LTQKATAPHVLLMTAT-PIPRTLVLTSLGD--IDISKITEKPAGRKPIKT 460
            G   +++  L++       L  +AT P     ++    D  + I   +EK     PI  
Sbjct: 156 MGFIDQVEDILSRLPKQRQNLFFSATMPEEMQDLIKRYQDNPMVIEMASEKT---NPIFH 212

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           V +  +  ++ ++   V+++E   +  I           F +   + + L +      + 
Sbjct: 213 VEMQTDNKEKTLK--DVLITENPDSAII-----------FCNTKNQVDELTDLLDVKASK 259

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG +   D+   MD FK+G  + LIAT V   GIDV + S++I  +        +H++ 
Sbjct: 260 IHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRI- 318

Query: 581 GRVGRGEEISSCI 593
           GR GR  +    I
Sbjct: 319 GRTGRAGKSGKAI 331


>gi|189346927|ref|YP_001943456.1| primosomal protein N' [Chlorobium limicola DSM 245]
 gi|189341074|gb|ACD90477.1| primosomal protein N' [Chlorobium limicola DSM 245]
          Length = 810

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 89/202 (44%), Gaps = 9/202 (4%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALL--LMRKQFKKEIGIPINVEGKIAQKILRNI 269
           PR+ + +   +   +   + E+L    ALL  L++K   ++  + I    +         
Sbjct: 211 PRQLEAYRALATLGDSPGFAEVLGFSSALLNELVKKGVAEKTTVEIRSNFRNTYSESPKN 270

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P  PT +Q  A+  + + + +K     +L G  GSGKTLV +  +   + +G  A+++ P
Sbjct: 271 PERPTAAQADALNTLEKAVEKKQFNTFLLHGVTGSGKTLVYIELLKRVLASGKTAIVLVP 330

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            I +  Q    F + +  +    + I+   M    +  A   + +G+  I +G  +    
Sbjct: 331 EISLTPQTAGRFRQHFHDD----ITILHSAMSDQEKYDAWHSLRNGRTKIALGARSTIFA 386

Query: 389 SIQYYKLILVIVDEQHRFGVQQ 410
            ++   + ++IVDE+H    +Q
Sbjct: 387 PLE--NIGVIIVDEEHDGAYKQ 406



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 12/102 (11%)

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
           IE LK VL+ GK A  + P+I    ++  R          +HF   I I+H  MSD +K 
Sbjct: 312 IELLKRVLASGKTAIVLVPEISLTPQTAGR--------FRQHFHDDITILHSAMSDQEKY 363

Query: 532 SVMDSFKNGTCKL-LIATTVIEVGIDVVDASIIIIENAEHFG 572
               S +NG  K+ L A + I   ++ +    +II + EH G
Sbjct: 364 DAWHSLRNGRTKIALGARSTIFAPLENIG---VIIVDEEHDG 402


>gi|332290001|ref|YP_004420853.1| primosome assembly protein PriA [Gallibacterium anatis UMN179]
 gi|330432897|gb|AEC17956.1| primosome assembly protein PriA [Gallibacterium anatis UMN179]
          Length = 735

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 9/110 (8%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +   ++   Q +++ P IG+  Q     I+++     + + ++
Sbjct: 222 LLQGVTGSGKTEVYLQVIEEVLKQKRQVLVLVPEIGLTPQ----IIRRFNLRFNVPIGVL 277

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH 404
             NM    R +  +    G+  I+IGT  A+F    Q+  L L+++DE+H
Sbjct: 278 HSNMTDNARLQVWQEARRGELAIVIGTRSAIF---TQFPDLGLIVLDEEH 324


>gi|323359563|ref|YP_004225959.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323275934|dbj|BAJ76079.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 482

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 130/310 (41%), Gaps = 37/310 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV----EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           I Q   G+GKT    I +   +    E G +A+I+ P   LA Q YE +   T N    V
Sbjct: 43  IGQAKTGTGKTFGFGIPVVQRLGLNPEPGVKALIVVPTRELAVQVYEDMDMLTSNRPTSV 102

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR-- 405
             I G   +A+  + ++++  G A I++GT     D      L L     V++DE  +  
Sbjct: 103 VAIYGG--KAYEGQ-IDQLKAG-AQIVVGTPGRLIDLANQRLLDLSNATEVVLDEADKML 158

Query: 406 -FGVQQRLKLTQKATAP--HVLLMTAT-PIPRTLVLTSLGDIDISKITEKPA---GRKPI 458
             G    ++       P  H  L +AT P P   +        I      P     +  I
Sbjct: 159 DLGFLADIEKIFSKVPPVRHTQLFSATMPGPIVALARRFMSNPIHMRANDPDEGLTQANI 218

Query: 459 KTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER-FNSLHEHFT 515
           K ++   + +D  EVI R  ++ SEG++   I  + +   +     + +R FN+      
Sbjct: 219 KHLVYRAHSLDKDEVIAR--ILQSEGREKAVIFTRTKRAAQKLVDELGDRGFNA------ 270

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
              A +HG MS   +E  M +FK G   +LIAT V   GIDV D + +I           
Sbjct: 271 ---AAVHGDMSQEARERSMAAFKAGKKDVLIATDVAARGIDVNDVTHVINHTIPDDEKTY 327

Query: 576 LHQLRGRVGR 585
           LH+  GR GR
Sbjct: 328 LHRA-GRTGR 336


>gi|312892306|ref|ZP_07751801.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311295090|gb|EFQ72264.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 428

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 143/349 (40%), Gaps = 50/349 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---------EAGG 322
           +PT  QE +I  IL+    +  +L   Q   G+GKT    I +   +           G 
Sbjct: 23  NPTPIQEQSIPIILE----RKDLLGCAQ--TGTGKTAAFAIPILQILYQEKVQNRDHKGI 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           + +I+ P   LA Q  E    Y ++T +   +I G + Q H+ +AL+R       I++ T
Sbjct: 77  KTLILTPTRELAIQIDESFAAYGKHTGLKHLVIFGGVSQHHQVEALKR----GVDILVAT 132

Query: 383 HALFQDSIQ-----YYKLILVIVDEQHRF----GVQQRLKLTQKATAPHVLLMTATPIPR 433
                D +Q        L ++++DE  R      V    K+  K       L  +  +P+
Sbjct: 133 PGRLLDLVQQKFVHLESLKILVLDEADRMLDMGFVNDVKKIIAKIPVKRQTLFFSATMPK 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            +   +L D  ++K         P K  + P++   + I++    + +  K   +   ++
Sbjct: 193 EI--QTLADTILNK---------PEKVEVTPVSSTADTIQQGIYFVDKNDKKSLLIHILK 241

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAI------IHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +KK           +   +     I +      IHG  S   ++  + +FKN + ++L+A
Sbjct: 242 DKKIETALVFTRTKHGADKVVKDLIRVGITAEAIHGNKSQNARQRALTNFKNRSTRILVA 301

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSC 592
           T +   GIDV D + +I     +     +H++ GR GR    G  +S C
Sbjct: 302 TDIAARGIDVDDLTHVINYELPNVPETYVHRI-GRTGRAGASGIALSFC 349


>gi|291483194|dbj|BAI84269.1| hypothetical protein BSNT_01265 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 376

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 137/310 (44%), Gaps = 38/310 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +PT  QE A + I   M  K+    I +   G+GKTL   + +   +   +   QAVI+A
Sbjct: 26  TPTPVQEQAAQLI---MDGKDV---IAESPTGTGKTLAYALPVLERIKPEQKHPQAVILA 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L  Q ++ I+ +   +++    + G    A+ +K +E++     HII+GT     +
Sbjct: 80  PSRELVMQIFQVIQDWKAGSELRAASLIGG---ANVKKQVEKLKK-HPHIIVGTPGRVFE 135

Query: 389 SIQYYKLIL-----VIVDE-------QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL- 435
            I+  KL +     +++DE       +HR  ++Q +K T +     +L  +AT    T  
Sbjct: 136 LIKAKKLKMHEVKTIVLDEADQLILPEHRETIKQIIKTTLRDR--QLLCFSATLKKETED 193

Query: 436 VLTSLG-DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           VL  L  + ++ K+         +K   +  ++ D+V    K+   EG +A      I  
Sbjct: 194 VLRELAQEPEVLKVQRSKVEAGKVKHQYLICDQRDKVKLLQKLSRLEGMQALVFVRDI-- 251

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N     E+    H      + ++H     +++  ++ +F++G   LL+AT +   G
Sbjct: 252 ---GNLSVYAEKLAYHH----VELGVLHSEAKKMERAKIIAAFEDGEFPLLLATDIAARG 304

Query: 555 IDVVDASIII 564
           +D+ +   +I
Sbjct: 305 LDIENLPYVI 314


>gi|168486403|ref|ZP_02710911.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae CDC1087-00]
 gi|183570562|gb|EDT91090.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae CDC1087-00]
          Length = 798

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|68071941|ref|XP_677884.1| eukaryotic initiation factor [Plasmodium berghei strain ANKA]
 gi|56498165|emb|CAH98223.1| eukaryotic initiation factor, putative [Plasmodium berghei]
          Length = 390

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 138/335 (41%), Gaps = 47/335 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+  IK IL      N    ILQ   G+GKT V  +     V       Q +I++P
Sbjct: 40  PSAIQQRGIKPIL------NGRDVILQSQSGTGKTCVFAVGALNCVNRNLNETQIIILSP 93

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HA 384
              LA+Q  +          + V    G    +   KAL    +   HII GT     H 
Sbjct: 94  TRELAEQTQKVCLALADYIHVTVYCCIGGKKLSDDIKAL----NNGVHIISGTPGRIYHM 149

Query: 385 LFQDSIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHV-LLMTATPIPRTLVLTSL 440
           L    ++   +  +++DE       G ++++    +  +P+  +++++  +P        
Sbjct: 150 LNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIVLSSATLPH------- 202

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
              ++ +IT K     P+K   I + R +  +E +K      +K  W    + +  ES  
Sbjct: 203 ---EVLEITNKFM-HNPVK---ILVKRDELTLEGIKQFFISIEKEQWKYETLADLYESLT 255

Query: 499 --------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   N +  V+      +    ++  +H  MS  +++ +M  F+    ++LI+T +
Sbjct: 256 ITQAVVFCNTKLKVDWLAKKMQESNFTVCKMHAGMSQSERDDIMLKFRQCKYRVLISTDI 315

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              G+DV + S+++  +  +     +H++ GR GR
Sbjct: 316 WGRGLDVHEVSLVVNYDLPNSRECYIHRI-GRSGR 349


>gi|16272669|ref|NP_438887.1| ATP-dependent DNA helicase [Haemophilus influenzae Rd KW20]
 gi|260579821|ref|ZP_05847651.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae RdAW]
 gi|2500112|sp|P71359|RECQ_HAEIN RecName: Full=ATP-dependent DNA helicase recQ
 gi|1573732|gb|AAC22387.1| ATP-dependent DNA helicase (recQ) [Haemophilus influenzae Rd KW20]
 gi|260093105|gb|EEW77038.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae RdAW]
          Length = 619

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 98/241 (40%), Gaps = 50/241 (20%)

Query: 382 THALFQDSIQYYKLILVIVDEQH---RFGVQQRLKLTQ----KATAPH--VLLMTATP-- 430
           T++ FQ  I Y K+  + +DE H   ++G   R + TQ    KA+ P   ++ +TAT   
Sbjct: 131 TNSFFQ-LISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADY 189

Query: 431 -----IPRTLVLTSL----GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                I R L L +L    G  D      +P  R  ++    P+ ++        V+  +
Sbjct: 190 ATQQDILRHLNLKNLHKYIGSFD------RPNIRYTLEEKYKPMEQLTRF-----VLAQK 238

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           GK     C         N R+ VER      +   S A  H  M    +E V   F+   
Sbjct: 239 GKSGIIYC---------NSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDN 289

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYH 597
            ++++AT    +GI+  +   +      HF L +     +Q  GR GR +  +  +L Y 
Sbjct: 290 VQVVVATIAFGMGINKSNVRFV-----AHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344

Query: 598 P 598
           P
Sbjct: 345 P 345


>gi|325570698|ref|ZP_08146424.1| ATP-dependent helicase RecQ [Enterococcus casseliflavus ATCC 12755]
 gi|325156544|gb|EGC68724.1| ATP-dependent helicase RecQ [Enterococcus casseliflavus ATCC 12755]
          Length = 588

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 3/102 (2%)

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           ++ R  VER   L +H   S+   HG +S+ ++    + F     ++++AT    +GI+ 
Sbjct: 234 ASTRKEVERIYHLLKHERVSVGYYHGGLSEEERSFFQEEFLYDRLQVMVATNAFGMGINK 293

Query: 558 VDASIIIIENAEHFG-LAQLHQLRGRVGRGEEISSCILLYHP 598
            +   +I  +A+  G L   +Q  GR GR  E S  ILLY P
Sbjct: 294 SNVRFVI--HAQIPGNLESYYQEAGRAGRDGEPSDAILLYAP 333


>gi|325262198|ref|ZP_08128936.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5]
 gi|324033652|gb|EGB94929.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5]
          Length = 481

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 133/327 (40%), Gaps = 54/327 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    I +   +   E   QA+I+ P   LA Q  E +    +  ++ V 
Sbjct: 44  VVKAPTGSGKTAAFAIPICENICWEENAPQALILEPTRELAVQVSEEMFYIGRKKRLKVP 103

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQH---R 405
            + G  P   + + L +    ++HI+ GT       L ++S+   K+  +++DE      
Sbjct: 104 ALFGGFPIDKQIQTLRQ----KSHIVTGTPGRIMDHLGRESLNLEKVRWLVIDEADLMLD 159

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPR------------TLVLTSLGDIDISKITEK 451
            G    +K  L+   T   + L +AT  P             T+V+ S  +  ++ ITEK
Sbjct: 160 MGFIDEVKKILSMVPTDCRISLFSATLKPEIQELVDEFIPDMTIVMQSATNEQVAAITEK 219

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                         N+ D  +E   ++++E  ++  I           F    E  N L 
Sbjct: 220 LY-------FTDQENKYDTFLE---ILINENPQSCMI-----------FCGTREMTNVLF 258

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +          ++HG M   ++   +D+F+ G  + LIAT V   GID    + ++  + 
Sbjct: 259 QKLRRRRIFCGMLHGEMEQRERLKTVDAFRRGCFRFLIATDVAARGIDFEQITHVVNYDF 318

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILL 595
                  +H++ GR GR  +  + I L
Sbjct: 319 PSKKETYVHRI-GRTGRNGKCGTAISL 344


>gi|260886800|ref|ZP_05898063.1| ATP-dependent DNA helicase RecQ [Selenomonas sputigena ATCC 35185]
 gi|330839391|ref|YP_004413971.1| ATP-dependent DNA helicase RecQ [Selenomonas sputigena ATCC 35185]
 gi|260863399|gb|EEX77899.1| ATP-dependent DNA helicase RecQ [Selenomonas sputigena ATCC 35185]
 gi|329747155|gb|AEC00512.1| ATP-dependent DNA helicase RecQ [Selenomonas sputigena ATCC 35185]
          Length = 593

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 74/359 (20%), Positives = 138/359 (38%), Gaps = 50/359 (13%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           +I Q+      F P  +QE+ +K +L+       M        G+GK++   +    A+ 
Sbjct: 11  QILQQTFGYKSFRP--AQETVVKSLLEGRETVAIM------PTGAGKSICFQVP---ALL 59

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
             G  ++++P+  L +   + + +           I  ++ QA  R  L  IA G   I+
Sbjct: 60  LPGVTLVISPLISLMKDQVDALTE----AGAPATFINSSLGQAEARARLSAIARGAYKIV 115

Query: 380 -IGTHAL----FQDSIQYYKLILVIVDEQH---RFGVQQRLKLTQKATAPHVLLMTATPI 431
            +    L    FQ  +Q   +  + +DE H   ++G     + + +A AP +  +   P+
Sbjct: 116 YVAPERLETDFFQSLLQEQTVSFIAIDEAHCLSQWG--HDFRPSYRAIAPFIECLPKRPL 173

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKP------------IKTVIIPINRIDEVIERLKVVL 479
                 T+   +    I    A R+P               V+  ++R D +   L+   
Sbjct: 174 IGAFTATATPRVK-DDIISLLALRRPAVHVAGFDRPNLFFGVLTGVDRKDFIANYLRTHR 232

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            E    Y        +KE++    + RF    +    ++   H  + D ++    D F  
Sbjct: 233 EEAGIIYCA-----TRKETD---ALSRFLQQKKF---AVRPYHAGLCDEERSKAQDDFLY 281

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              + ++AT    +GID  +   +I  N     +   +Q  GR GR  E   CILL+ P
Sbjct: 282 DNVQAIVATNAFGMGIDKSNVRFVIHYNMPK-NIESYYQEAGRAGRDGEPGECILLFSP 339


>gi|229029843|ref|ZP_04185913.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1271]
 gi|228731458|gb|EEL82370.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1271]
          Length = 389

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 137/308 (44%), Gaps = 39/308 (12%)

Query: 274 TKSQESAIKDIL--QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           T+ Q+ AI  IL  QD+        I +   G+GKTL  L+ +   +       Q V++A
Sbjct: 22  TEIQKQAIPTILEGQDV--------IAESPTGTGKTLAYLLPLLHKINPEVKQPQVVVLA 73

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L  Q +E ++K+T  T+I    + G    A  ++ +E++      +I+G+     +
Sbjct: 74  PTRELVMQIHEEVQKFTAGTEISGASLIGG---ADIKRQVEKLKK-HPRVIVGSPGRILE 129

Query: 389 SIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            I+  KL +     ++ DE  +   Q+ +   Q        ++ +T   R LV  S    
Sbjct: 130 LIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQD-------VIKSTMRDRQLVFFS---A 179

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWI--CPQIEEKKESN 499
            I+K  E  A    ++  ++ I R +   ++E   ++    +K  ++     + + K   
Sbjct: 180 TITKAAEDAARDLAVEPQLVRITRAESKSLVEHTYIICERREKNDYVRRIMHMGDVKAVA 239

Query: 500 FRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F +   R + + +         A +H   S  ++E+ M +F++G  ++L+AT +   GID
Sbjct: 240 FLNDPFRLDEITQKLQFRKMKAAALHSEASKQEREATMRAFRSGKLEILLATDIAARGID 299

Query: 557 VVDASIII 564
           + D + +I
Sbjct: 300 IDDLTHVI 307


>gi|293333116|ref|NP_001169206.1| hypothetical protein LOC100383059 [Zea mays]
 gi|223975507|gb|ACN31941.1| unknown [Zea mays]
          Length = 364

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 133/312 (42%), Gaps = 41/312 (13%)

Query: 303 GSGKTLVALIAMAAAVEAGGQ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           GSGKTL  L  +   ++ G +    AVI+ P   LA Q     KK  +  +  ++++T  
Sbjct: 17  GSGKTLAFLFPLLMKIKPGSKGGVKAVILCPTRELAAQTVRECKKLVKGRKYYIKLMTKE 76

Query: 359 MPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHRFG----VQ 409
           + ++   K +         I++ T     HA+ +  +    +  +++DE  +      V+
Sbjct: 77  LSKSGNFKDM------HCDILVSTPLRLDHAVKKRDLDLSSVEYLVLDESDKLFELGFVE 130

Query: 410 QRLKLTQKATAPHVL--LMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
               + +  + P ++  L +AT +P    TL  T + D  I  I     GRK   + +I 
Sbjct: 131 VVDSVVEACSNPSIIRSLFSAT-LPDSIETLARTIMHDA-IRVIV----GRKNSASSLIK 184

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAII 521
              I    ER K++         + P +       F    ER   L++        + +I
Sbjct: 185 QKLIFAGTERGKLLTLRQNFQESLNPPV-----LIFVQSKERAKELYKELAFDDIRVDVI 239

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL-- 579
           H  +S+  ++  +D+ + G   +LIAT VI  G+D    + +I  +      A +H++  
Sbjct: 240 HADLSEQQRQDAVDNLRAGKTWVLIATEVIARGMDFKGVASVINYDFPESAAAYIHRIGR 299

Query: 580 RGRVGR-GEEIS 590
            GR GR GE I+
Sbjct: 300 SGRAGRSGEAIT 311


>gi|224369411|ref|YP_002603575.1| RhlE2 [Desulfobacterium autotrophicum HRM2]
 gi|223692128|gb|ACN15411.1| RhlE2 [Desulfobacterium autotrophicum HRM2]
          Length = 460

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 130/314 (41%), Gaps = 42/314 (13%)

Query: 297 ILQGDVGSGKT------LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           + +   G+GKT      +V ++A   A     +A+++ P   LA Q  E IK Y +   +
Sbjct: 42  LARAQTGTGKTDAFALPIVEILARGKAHRRHPRALVLTPTRELALQVGESIKAYARRVSL 101

Query: 351 IVEIITGNM---PQAHRRKALERIAHGQAHIIIGTH------ALFQDSIQYYKLILVIVD 401
              ++ G +   PQ      ++R+  G   I++ T       A F   ++  K+  ++ D
Sbjct: 102 RCTVVYGGVNVNPQ------IDRLKRG-VDILVATPGRLLDLAAFNRDVKLSKIEFLVFD 154

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPI 458
           E  R      L L        +L +    +P   RT++ ++     I  + +K   + P 
Sbjct: 155 EADRM-----LDLGFSDEISQILEL----VPQDRRTMLFSATYTRQIRDLADKML-KTPE 204

Query: 459 KTVIIPINRIDE-VIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHFT 515
           +  + P   + E +++++ +V    K+   I    + + ++   F       N L E   
Sbjct: 205 QIEVTPNTTVAESIVQKVHLVEKSNKRELLIHLITRSDWRQVLVFTRTKHGANKLAERLA 264

Query: 516 S---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               S A +HG  S   +   +  FKNG  ++L+AT V   G+D+     ++  +     
Sbjct: 265 QVKISAAALHGNKSQSFRTRTLQEFKNGEIRILVATDVAARGLDITGLPHVVNYDMPSVA 324

Query: 573 LAQLHQLRGRVGRG 586
              +H++ GR GR 
Sbjct: 325 EDYVHRI-GRTGRA 337


>gi|206971476|ref|ZP_03232426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206733461|gb|EDZ50633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
          Length = 458

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPDSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFIMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNFDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|157150549|ref|YP_001450886.1| DEAD-box ATP dependent DNA helicase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075343|gb|ABV10026.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 523

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 131/335 (39%), Gaps = 38/335 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT          ++      QA+++AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALVIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I        Q   LIL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLDQIETLILDEADEMLN 157

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G  + ++           +++  P  R  +L S    D  K       ++P    I   
Sbjct: 158 MGFLEDIES----------IISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK 207

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI----- 520
               E++++  + + E +K +    ++ + ++     V  R     +  T  + I     
Sbjct: 208 ELTTELVDQYYIRVKENEK-FDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRA 266

Query: 521 --IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +H+
Sbjct: 267 EGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 326

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + GR GR  +    I    P    N    L +++N
Sbjct: 327 I-GRTGRAGKSGQSITFVAP----NEMGYLQIIEN 356


>gi|149240601|ref|XP_001526175.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013500|sp|A5DZE6|DED1_LODEL RecName: Full=ATP-dependent RNA helicase DED1
 gi|146450298|gb|EDK44554.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 664

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 123/301 (40%), Gaps = 53/301 (17%)

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++MAP   L  Q Y+  KK+   + +   ++ G     ++ + L+R       +++ T  
Sbjct: 262 LVMAPTRELVSQIYDESKKFAYRSWVRPCVVYGGADIGNQIRQLDR----GCDLLVATPG 317

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRF-------------------GVQQRLKLTQKATA 420
             +D ++  ++ L     +++DE  R                     VQ R  L   AT 
Sbjct: 318 RLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFSATF 377

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDIS--KITEKP--AGRKPIKTVIIPINRIDEVIERLK 476
           P  + M A    +  +  S+G +  +   IT+K      +  K+VI+ +  ++   E L 
Sbjct: 378 PRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVEDEEKKSVILDL--LNANSEGLT 435

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           +V +E K                 R      + L++    + AI HG  S  ++E  + +
Sbjct: 436 IVFTETK-----------------RMADNLADFLYDQGFPATAI-HGDRSQYEREKALAA 477

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+G   +L+AT V   G+D+ + S +I  +        +H++ GR GR   +      +
Sbjct: 478 FKSGQAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRI-GRTGRAGNVGIATAFF 536

Query: 597 H 597
           +
Sbjct: 537 N 537


>gi|73969109|ref|XP_860668.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 11 [Canis
           familiaris]
          Length = 651

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 77/354 (21%), Positives = 138/354 (38%), Gaps = 60/354 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  L+     +          G   +++AP   LAQQ  +    Y 
Sbjct: 132 MVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 189

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIV 400
           + +++    I G  P+  + + LER       I I T     D ++  K  L     +++
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVL 245

Query: 401 DEQHRF---GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           DE  R    G +             R  L   AT P  +   A    R     ++G++++
Sbjct: 246 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLEL 305

Query: 446 S---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           S    I +       I  V +   +  ++I+ ++ +++E           +E K   F  
Sbjct: 306 SANHNILQ-------IVDVCMESEKDHKLIQLMEEIMAE-----------KENKTIIFVE 347

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI-DVV 558
              R + L             IHG  S  +++ V++ F++G   +LIAT V   G+ +V 
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLGNVE 407

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           D   +I  +  +     +H++ GR  R     +    + P   K +   + VL+
Sbjct: 408 DVKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLE 460


>gi|325694295|gb|EGD36209.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK150]
          Length = 363

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 139/339 (41%), Gaps = 51/339 (15%)

Query: 302 VGSGKTLVALIA--MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            G+GKTL  L    +    +   Q +I+AP   LA Q +E  K + +   +  +++    
Sbjct: 46  TGTGKTLAYLFPSLLKLTPKKAQQLLILAPNTELAGQIFEVCKTWAEPLGLTAQLLLSGS 105

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKL 414
            Q   ++ +ER+  G   IIIGT     + ++  K+ +     +I+DE  +     +   
Sbjct: 106 SQ---KRQIERLKKG-PEIIIGTPGRIFELVKLKKIKMMNVETIILDEFDQLLSDSQYHF 161

Query: 415 TQKAT--AP---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             K T  AP    ++ M+AT              D  KI E         T+ I I+  D
Sbjct: 162 VDKITHYAPRNHQLIYMSAT-----------AKFDHDKIAEN--------TLEISID--D 200

Query: 470 EVIERLKVVLSEGKKAYWI-----CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
           +V++ ++    + +K   +        +EE +   F + +    S  E      + +   
Sbjct: 201 QVLDNIQHFYMQVEKRDKVDLLRKLSNVEEFRGLVFFNALSDLGSAEEKLQYRESNVVSL 260

Query: 525 MSDID---KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            SD++   ++ ++D FK     LL+AT ++  GID +D+   ++       L       G
Sbjct: 261 ASDVNVKFRKVILDKFKEHQITLLLATDLVARGID-IDSLECVVNYELPRDLETYTHRSG 319

Query: 582 RVGR-GEEISSCILLYHP----PLSKNSYTRLSVLKNTE 615
           R GR G+E      + HP     L K    R  VLKN E
Sbjct: 320 RTGRMGKEGYVITFISHPEELKTLKKYVAVREIVLKNQE 358


>gi|313632875|gb|EFR99821.1| helicase domain-containing protein [Listeria seeligeri FSL N1-067]
          Length = 444

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 132/316 (41%), Gaps = 38/316 (12%)

Query: 302 VGSGKTLVALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
            G+GKT+   +     +EA    Q +I+AP   L  Q  E I+ +  +  + V  + G  
Sbjct: 45  TGTGKTVAYALPTLEKIEATPHIQWLILAPSHELVMQITEVIRSWLPSEDLTVISLIGG- 103

Query: 360 PQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
             A+ ++ +E++   +  II+ +       + Q  I+ +++  + +DE  +   Q+  K 
Sbjct: 104 --ANVKRQIEKLKK-KPQIIVASPGRALELIKQKKIKMHEIKTITLDECDQLLRQENFKS 160

Query: 415 TQKATAPHV-----LLMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           T +     V      L++AT +  P T    +  +  + ++T KP     ++ + + +  
Sbjct: 161 TLEIVESAVRDRQLTLVSATKLENPETFFGQTEQEPVVLEVTAKPEELTNVEHLYMDVES 220

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            D+     ++   +  +A         K +     ++E+      HF     A IHG + 
Sbjct: 221 RDKATLLRRISHIKDMRALVFV-----KDKPRMEILLEKL-----HFDKVKAAGIHGEIR 270

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA----QLHQLRGR 582
              ++  +D FK GT   LI T V   G+D+ D   +I     H+ LA    +     GR
Sbjct: 271 KEKRKKYLDDFKKGTLTYLIVTDVAARGLDIEDLPYVI-----HYDLAASEKEYTHRSGR 325

Query: 583 VGRGEEISSCILLYHP 598
            GR  +  + I   +P
Sbjct: 326 TGRMGKSGTVITFANP 341


>gi|284922915|emb|CBG36004.1| putative ATP-dependent helicase [Escherichia coli 042]
          Length = 732

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 154/365 (42%), Gaps = 47/365 (12%)

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVI-MAPIGIL 333
           QES+I  IL     ++R + I  G   +GKT    +   +A+    GG  +I ++P+  L
Sbjct: 28  QESSIPAILA----RDRDVLISAG-TAAGKTEAFFLPACSAIADLTGGFGIIYISPLKAL 82

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII--GTHALFQDSIQ 391
               +  ++   +  ++ V    G++PQ+ ++KA  R       +I      +L  +S+ 
Sbjct: 83  INDQHRRLESLGEALEMQVTPWHGDVPQSKKKKA--RTTPSGILLITPESLESLLINSLG 140

Query: 392 YYK-----LILVIVDEQHRF-GVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDID 444
           + K     +  +++DE H F G ++ ++L        HVL     P+PR  +  +LG+++
Sbjct: 141 WLKQAFSSVAYIVIDEFHAFIGSERGIQLLSLLNRIDHVLGRQLNPVPRVALSATLGELE 200

Query: 445 ISKITEKPAGRKPIKTVIIPINR----------IDEVIERLKVVLSEGKKAYWICPQIEE 494
                 +P  R P +TV    ++          ++ V E+ K + S  ++   +C  I  
Sbjct: 201 KVPELLRPDKRLPCETVTDSNSKATIQVQVKGYLERVPEKGKELQSSAEQL--VCADIFR 258

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAII-------------HGRMSDIDKESVMDSFKNGT 541
               +   V        E   ++++ +             HG ++   +E++    + G 
Sbjct: 259 LCRGDSHLVFANSRKRTESIAATLSDMCEANVVPNEFFPHHGSLARELREALEARLQKGN 318

Query: 542 C-KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC-ILLYHPP 599
                + T  +E+GID+     +I     H  ++ L Q  GR GR +  S   +L+  P 
Sbjct: 319 LPTTAVCTMTLELGIDIGKVQSVIQVTPPH-SVSSLRQRMGRSGRRDSPSVLRMLITEPE 377

Query: 600 LSKNS 604
           L+  S
Sbjct: 378 LTATS 382


>gi|228900742|ref|ZP_04064960.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           IBL 4222]
 gi|228858926|gb|EEN03368.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           IBL 4222]
          Length = 389

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 141/317 (44%), Gaps = 38/317 (11%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQG-DV------GSGKTLVALIAMAAAVE--- 319
           PF     +++  K++ +   QK  +  IL+G DV      G+GKTL  L+ +   +    
Sbjct: 7   PFLQEAWEKAGFKELTE--IQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINPEV 64

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q V++AP   L  Q +E ++K+T  T+I    + G    A  ++ +E++      +I
Sbjct: 65  KQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGG---ADIKRQVEKLKK-HPRVI 120

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           +G+     + I+  KL +     ++ DE  +   Q+ +   Q        ++ +T   R 
Sbjct: 121 VGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQD-------VIKSTMRDRQ 173

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWI--CP 490
           LV  S     I+K  E  A    ++  ++ I R +   ++E   ++    +K  ++    
Sbjct: 174 LVFFS---ATITKAAEDAARDLAVEPQLVRITRAESKSLVEHTYIICERREKNDYVRRIM 230

Query: 491 QIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            + + K   F +   R + + +         A +H   S  ++E+ M +F+ G  ++L+A
Sbjct: 231 HMGDVKAVAFLNDPFRLDEITQKLQFRKMKAAALHSEASKQEREATMRAFRGGKLEILLA 290

Query: 548 TTVIEVGIDVVDASIII 564
           T +   GID+ D + +I
Sbjct: 291 TDIAARGIDIDDLTHVI 307


>gi|228992596|ref|ZP_04152523.1| Primosomal protein N' [Bacillus pseudomycoides DSM 12442]
 gi|228767230|gb|EEM15866.1| Primosomal protein N' [Bacillus pseudomycoides DSM 12442]
          Length = 767

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q   I  IL  ++ +     +L G  GSGKT V L ++AA ++ G +A+++ P
Sbjct: 228 PFPLTDEQNQVITPILSSITNETYNPFLLYGVTGSGKTEVYLQSIAAVLKKGKEAIVLVP 287

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++     ++   ++        RK L +    +  +++G   A+F 
Sbjct: 288 EIALTPQMVDRFKGRFGSQVAVLHSALSVGEKYDEWRKILRK----EVKVVVGARSAIFA 343

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 344 P---FENLGIIIIDEEHESSYKQ 363


>gi|229150655|ref|ZP_04278869.1| ATP-dependent RNA helicase [Bacillus cereus m1550]
 gi|228632742|gb|EEK89357.1| ATP-dependent RNA helicase [Bacillus cereus m1550]
          Length = 454

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPDSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFIMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|212712507|ref|ZP_03320635.1| hypothetical protein PROVALCAL_03602 [Providencia alcalifaciens DSM
           30120]
 gi|212684723|gb|EEB44251.1| hypothetical protein PROVALCAL_03602 [Providencia alcalifaciens DSM
           30120]
          Length = 732

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 9/117 (7%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L G  GSGKT V L  +   +  G QA+++ P IG+  Q     I ++ +   + V+++
Sbjct: 221 LLAGITGSGKTEVYLSVLENILAQGKQALVLVPEIGLTPQT----INRFRERFNVPVDVL 276

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR 411
              +  + R     R   G   IIIGT  ALF     +  L ++I+DE+H    +Q+
Sbjct: 277 HSALNDSERLAVWLRAKQGSNGIIIGTRSALF---TPFAHLGIIIIDEEHDSSYKQQ 330


>gi|149204620|ref|ZP_01881585.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035]
 gi|149141879|gb|EDM29929.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035]
          Length = 506

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 65/335 (19%), Positives = 133/335 (39%), Gaps = 52/335 (15%)

Query: 302 VGSGKT------LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            G+GKT      +++L++   A     +++++ P   LA Q  E    Y+++ ++   ++
Sbjct: 48  TGTGKTASFTLPMLSLLSRGRARARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALL 107

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQ 410
            G +    + K +++       ++I T     D  +  KL+L     ++VDE  R     
Sbjct: 108 IGGVSFKEQDKLIDK----GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADR----- 158

Query: 411 RLKLTQKATAPHV-LLMTATPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
              +      P +  + + TP  R TL  ++    +I +IT       P +  +      
Sbjct: 159 ---MLDMGFIPDIERIFSLTPFTRQTLFFSATMAPEIERITNTFLS-NPARVEVARQATA 214

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH--------------- 513
            E IE+  V+    ++        + +K    R++++R  +   +               
Sbjct: 215 SETIEQGVVMFKPSRRE-----NADSEKRKLLRALIDREGAACSNAIIFCNRKIDVDVVA 269

Query: 514 -----FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                +    A IHG +    +   +D F+ GT + LIA+ V   G+DV   S +   + 
Sbjct: 270 KSLIKYGYDAAPIHGDLDQSQRTRTLDGFRAGTLRFLIASDVAARGLDVPAVSHVFNFDV 329

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
                  +H++ GR GR       +++ +P   KN
Sbjct: 330 PSHAEDYVHRI-GRTGRAGRSGKALMICNPRDEKN 363


>gi|317012091|gb|ADU82699.1| ATP-dependent RNA helicase [Helicobacter pylori Lithuania75]
          Length = 491

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 142/348 (40%), Gaps = 47/348 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++     +A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G       +K  E I      ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQ---SVKKQCEFIKKN-PQVMIATPGRLLDH 151

Query: 390 IQY---YKLI--LVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT---PIPRTLV 436
           ++    +K +  +V++DE         L   ++      +   +LL +AT   PI R   
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKR--- 208

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE-- 494
              L D    KI E P     IK  I P N  +  I +   V++E ++A  I   ++   
Sbjct: 209 ---LAD----KILENP-----IKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256

Query: 495 -KKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            KK   F    +  + LH+   S       +HG M   D+ + + +FK     +L+AT V
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 316

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|229079638|ref|ZP_04212172.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2]
 gi|228703680|gb|EEL56132.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2]
          Length = 454

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNFDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|242801276|ref|XP_002483729.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218717074|gb|EED16495.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 803

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 127/305 (41%), Gaps = 53/305 (17%)

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHG---QA 376
           G  A+I+AP   LAQQ     KK+++     +V I+ G+        +LE  A+     A
Sbjct: 441 GPYAIILAPTRELAQQIEIEAKKFSKPLNFNVVSIVGGH--------SLEEQAYSLRDGA 492

Query: 377 HIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKL-------------T 415
            III T     D ++   L+L     VI+DE  R    G ++ +               T
Sbjct: 493 EIIIATPGRLVDCLERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDT 552

Query: 416 QKATAPHVLLMTATPIPR----TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           ++A     +        R    T++ T+     + +I  K   R  I T+      +D V
Sbjct: 553 EEAEDAQAMSQHVGGRDRRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNVGQAVDTV 612

Query: 472 IERLKVVLSEGKKAYWICPQIEEKK-----------ESNFRSVVERFNSLHEHFTSSIAI 520
            +R++ V  E K+   +   +   +           + N  +V +    +   F+S    
Sbjct: 613 EQRVEFVAGEDKRKKRLADILMSGQFQPPIIVFVNIKRNCDAVAKDIKQMG--FSS--VT 668

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG  +   +E+ + S +NG+  +L+AT +   GIDV D S+++  N      +  H++ 
Sbjct: 669 LHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRI- 727

Query: 581 GRVGR 585
           GR GR
Sbjct: 728 GRTGR 732


>gi|254462197|ref|ZP_05075613.1| primosomal protein N [Rhodobacterales bacterium HTCC2083]
 gi|206678786|gb|EDZ43273.1| primosomal protein N [Rhodobacteraceae bacterium HTCC2083]
          Length = 739

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 19/146 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +L+G  GSGKT V L A+A  +  G QA+++ P I + A      ++++          +
Sbjct: 229 LLRGVTGSGKTEVYLEAVAECLRKGRQALVLLPEIALTAAFLTRVLERFGAKPAEWHSGV 288

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           T       RR+  + +  G A +++G   ALF   + +  L L++VDE+H    +Q   +
Sbjct: 289 T----MTERRRTWKMVGQGGAQLVVGARSALF---LPFRDLGLIVVDEEHDTSYKQEDGV 341

Query: 415 TQKA----------TAPHVLLMTATP 430
              A           +  V+L +ATP
Sbjct: 342 LYNARDMTVLRASICSAQVILASATP 367


>gi|187940200|gb|ACD39328.1| ATP-dependent DNA helicase [Pseudomonas aeruginosa]
          Length = 1708

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG-LAQLHQL 579
            H  +   DK+ + D FK G+ ++++AT    +G+D  D  +++  +A+  G L    Q 
Sbjct: 560 FHAGLEPHDKKDIQDEFKAGSLRVIVATNAFGMGVDKADIRLVV--HADIPGSLENYLQE 617

Query: 580 RGRVGRGEEISSCILLY 596
            GR GR +  + C+LLY
Sbjct: 618 AGRAGRDQGQARCVLLY 634


>gi|52143016|ref|YP_083814.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
 gi|51976485|gb|AAU18035.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
          Length = 450

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 138/318 (43%), Gaps = 53/318 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+ +   +   +D  ++ +  +    + T+ 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIE 220

Query: 463 IPINRIDEVIER-----LKVVLSEGKK--AYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
               R+ E  +R     L+ V+   +   A   C           R+ V R + L+++  
Sbjct: 221 ---QRVIETTDRAKPDALRFVMDRDQPFLAVIFC-----------RTKV-RASKLYDNLK 265

Query: 516 S---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENA 568
               + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ 
Sbjct: 266 GLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDV 325

Query: 569 EHFGLAQLHQLRGRVGRG 586
           E +    +H++ GR GR 
Sbjct: 326 ESY----IHRI-GRTGRA 338


>gi|302184790|ref|ZP_07261463.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           syringae 642]
          Length = 442

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 145/343 (42%), Gaps = 43/343 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGG--Q 323
           +PT  Q  AI  +L       R L +     G+GKT      L+  + M     A    +
Sbjct: 23  TPTPVQTQAIPPVL-----AGRDL-MAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNSIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHR-RKALERIAHGQAHII 379
           A+++AP   LA Q +E I++Y ++  +      G +   PQ  + R+ ++ +      ++
Sbjct: 77  ALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVLVATPGRLL 136

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHR---FGVQQRLKLTQKATAP---HVLLMTATPIP- 432
              H   Q+++++ +L  +I+DE  R    G  + L+    A  P     LL +AT    
Sbjct: 137 -DLHR--QNAVKFSQLQTLILDEADRMLDLGFAEELRGIY-AVLPKQRQTLLFSATFSDE 192

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L    L D    +++ +      +K  ++ +++      +  + +   KK  W    
Sbjct: 193 IRLLAAQMLNDPLTIEVSPRNVAAASVKQWVVTVDKK----RKADLFIHLMKKHRWGQVL 248

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +  K       +V+R  +L  +       IHG      ++  +D FK+   K+L+AT V 
Sbjct: 249 VFAKTRVGVDQLVDRLQALGMNADG----IHGDKPQATRQRALDRFKSNEVKILVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEIS 590
             G+D+ D   ++  +        +H++ GR GR    GE IS
Sbjct: 305 ARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGLTGEAIS 346


>gi|126343379|ref|XP_001380649.1| PREDICTED: similar to Gu protein [Monodelphis domestica]
          Length = 902

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 135/338 (39%), Gaps = 59/338 (17%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQA---------VIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++   Q          +++AP   L+ Q  +     T+ 
Sbjct: 380 IAQARTGTGKTFSFAIPLVEKLQGDSQPRPRGRAPKILVLAPTRELSIQVSKDFSDITK- 438

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +   ++ I  G   I++GT    +D +Q  +L L     V++DE
Sbjct: 439 -KLTVACFYGGTPYNGQ---IDLIRRG-IDILVGTPGRIKDHLQNGRLDLTKVQHVVLDE 493

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTAT------PIPRTLVLTSLGDIDIS 446
             +         V++ L +  K  +   P  LL +AT       + +  + ++   +D+ 
Sbjct: 494 VDQMLDMGFAEQVEEILTVAYKKDSEDNPQTLLFSATCPHWVYDVAKKYMKSTYEQVDL- 552

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-- 504
                  G+K  K  +         +E L +     ++A  I   I+    S+ R+++  
Sbjct: 553 ------IGKKTQKAAV--------TVEHLAINCHWSQRAAVIGDVIQVYSGSHGRTIIFC 598

Query: 505 -----ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                 +  SL+E        +HG +    +E  +  F+NG   +L+AT V   G+D+ +
Sbjct: 599 ETKKEAQELSLNESIKQDAQSLHGDIPQKQREITLQGFRNGKFGVLVATNVAARGLDIPE 658

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             ++I  +      + +H+  GR GR      CI  Y 
Sbjct: 659 VDLVIQSSPPKDVESYIHR-SGRTGRAGRTGICICFYQ 695


>gi|322374813|ref|ZP_08049327.1| primosomal protein N' [Streptococcus sp. C300]
 gi|321280313|gb|EFX57352.1| primosomal protein N' [Streptococcus sp. C300]
          Length = 798

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++ +     V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGEK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEASYKQ 393


>gi|313631504|gb|EFR98797.1| ATP-dependent DNA helicase RecQ [Listeria seeligeri FSL N1-067]
          Length = 591

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNF-----RSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            +VV  + K  Y +    + K ES       R  VER ++          + HG MSDI 
Sbjct: 208 FQVVKGQDKDKYLMDYLTKNKTESGIVYASTRKEVERLHAFLLKKGVEAGMYHGGMSDIA 267

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +    + F     ++++AT    +GI+  +   +I  N     +   +Q  GR GR    
Sbjct: 268 RRDWQEKFLYDDIRVIVATNAFGMGINKSNVRFVIHYNIPR-NIEAYYQEAGRAGRDGVP 326

Query: 590 SSCILLYHPPLSK 602
           S CILL+ P  S+
Sbjct: 327 SDCILLFSPQDSR 339


>gi|289621230|emb|CBI52013.1| unnamed protein product [Sordaria macrospora]
          Length = 777

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 30/181 (16%)

Query: 500 FRSVVERFNSLHEHF----------TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           F   ++R  +LH+            ++ +A++H  +SD  +  +M  F++G   +LI T 
Sbjct: 547 FTQTIDRAQALHDELKYDIPLEAGGSARVAVLHSSLSDSVRSKIMARFRSGEVWVLITTD 606

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHP---PLSKNSY 605
           V+  G+D    + ++  +      A +H+  GR GR G E    +  Y     P  K S 
Sbjct: 607 VLARGVDFAGVNGVVNYDVPVSAAAYVHRA-GRTGRAGREGGVAVTFYTKDDIPFVK-SV 664

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             +  +   + G  I E+D  +  +G +              Q  L D+L ++A++D + 
Sbjct: 665 ANVIAMSEKQAGKDIDEKDTVKAAQGSV--------------QKWLLDALPKVAKEDKRK 710

Query: 666 I 666
           +
Sbjct: 711 L 711


>gi|271969585|ref|YP_003343781.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021]
 gi|270512760|gb|ACZ91038.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021]
          Length = 697

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           + A +HG +    +E  + +F+NG   +L+AT V   GIDV D + ++  +      A +
Sbjct: 309 AAAAVHGDLGQGQREQALRAFRNGKIDVLVATDVAARGIDVDDVTHVVNYDCPQDEKAYV 368

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           H++ GR GR  +    +      +     TR  V+ N
Sbjct: 369 HRI-GRTGRAGKTGVAVTF----VEWEDLTRWKVINN 400


>gi|269963221|ref|ZP_06177555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio harveyi
           1DA3]
 gi|269832026|gb|EEZ86151.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio harveyi
           1DA3]
          Length = 421

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 141/342 (41%), Gaps = 58/342 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----AGGQAVI 326
           +PT  QE +I  +L+       +L   Q   G+GKT    + +   V+        QA+I
Sbjct: 29  TPTPVQEKSIPHVLEGKD----LLAAAQ--TGTGKTAAFGLPIIQTVQQKKRNGTPQALI 82

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-- 384
           + P   LAQQ  + + +Y+ NT + +  + G      +++ LE      A I+I T    
Sbjct: 83  LVPTRELAQQVMDNLTQYSANTDLKIVCVYGGTSIGVQKRKLEE----GADILIATPGRL 138

Query: 385 ---LFQDSIQYYKLILVIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLV 436
              LF  ++   K  ++++DE  R    G    L+  L +      ++L +AT   R   
Sbjct: 139 LDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPQDKQIMLFSATFEKR--- 195

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK----AYWICPQI 492
                   I  I  K     P++  + P N   E ++++   + + +K    AY I  + 
Sbjct: 196 --------IKTIAYKLMD-SPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSR- 245

Query: 493 EEKKESNFRSVV--ERFNSLHEHFTSSIAI-------IHGRMSDIDKESVMDSFKNGTCK 543
                 N++ V+   +     +     + +       I+G  S   ++  +D FK G  +
Sbjct: 246 ------NWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKEGKVR 299

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            LIAT V   G+D+ +   ++  +        +H++ GR GR
Sbjct: 300 ALIATDVAARGLDIQELEQVVNFDMPFKAEDYVHRI-GRTGR 340


>gi|312111729|ref|YP_003990045.1| primosomal protein N' [Geobacillus sp. Y4.1MC1]
 gi|311216830|gb|ADP75434.1| primosomal protein N' [Geobacillus sp. Y4.1MC1]
          Length = 804

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P S T  QE A+  +++ +      + +L G  GSGKT V + A+   +  G +A+++ P
Sbjct: 264 PLSLTAEQEKALSSVIESVRTNKHEVFLLYGVTGSGKTEVYMQAIEEVLRQGKEAIVLVP 323

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQD 388
              L  Q    +K++       V ++   +    +     +I   +  +++G   A+F  
Sbjct: 324 EISLTPQ---MVKRFKGRFGSQVAVLHSGLSIGEKYDEWRKIHRKEVQLVVGARSAIFAP 380

Query: 389 SIQYYKLILVIVDEQHRFGVQQ 410
              +  L ++I+DE+H    +Q
Sbjct: 381 ---FENLGMIIIDEEHETSYKQ 399


>gi|290894075|ref|ZP_06557049.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J2-071]
 gi|290556419|gb|EFD89959.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J2-071]
          Length = 470

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 122/310 (39%), Gaps = 31/310 (10%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKT    I +A  VE      QA+I+ P   LA Q         +  ++   
Sbjct: 40  VAKSQTGSGKTAAFAIPIAEQVEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAA 99

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
            I G  P A ++  L +    + HI++GT     D I+           L+L  VDE   
Sbjct: 100 AIYGQSPFAKQKLELSQ----KNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLS 155

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G   +++  L++       L  +AT       L      D   I        PI  V +
Sbjct: 156 MGFIDQVEDILSRLPKQRQNLFFSATMPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEM 215

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             +  ++ ++   V+++E   +  I           F +   + + L +        IHG
Sbjct: 216 QTDNKEKTLK--DVLITENPDSAII-----------FCNTKNQVDELTDLLDVKANKIHG 262

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +   D+   MD FK+G  + LIAT V   GIDV + S++I  +        +H++ GR 
Sbjct: 263 GLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRI-GRT 321

Query: 584 GRGEEISSCI 593
           GR  +    I
Sbjct: 322 GRAGKSGKAI 331


>gi|223984314|ref|ZP_03634457.1| hypothetical protein HOLDEFILI_01751 [Holdemania filiformis DSM
           12042]
 gi|223963714|gb|EEF68083.1| hypothetical protein HOLDEFILI_01751 [Holdemania filiformis DSM
           12042]
          Length = 722

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 19/193 (9%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           K ++Q++    + + +L G  GSGKT V L      ++AG Q +I+ P   L  Q    +
Sbjct: 202 KRVVQEIQTSTQDVILLHGVTGSGKTEVYLHLARQVLDAGQQVLILVPEISLTPQMVARV 261

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIV 400
           K   QN    V I    +    + +   R+   QA I++GT  A+F   + +  L L+I+
Sbjct: 262 KGRFQND---VAIYHSALNNQQKYEQYCRVFEKQASIVVGTRSAVF---MPFDHLGLIIL 315

Query: 401 DEQHRFGVQQRLKLTQ---KATAPH--------VLLMTATPIPRTLVLTSLGDIDISKIT 449
           DE+H    +Q   L Q   +  A H        V+L +ATP   +      G   ++++ 
Sbjct: 316 DEEHDSSYKQD-SLPQYHCRDIAIHRARHFGCKVILGSATPSLESYARALKGVYGLAELK 374

Query: 450 EKPAGRKPIKTVI 462
           E+   + P+ TV+
Sbjct: 375 ERVNRQLPVCTVV 387


>gi|207344698|gb|EDZ71756.1| YHR065Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 496

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 118/300 (39%), Gaps = 26/300 (8%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GSGKT    I +   +    +   A I+AP   LAQQ  E          +    I G 
Sbjct: 169 TGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGG 228

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ------YYKLILVIVDEQHRFGVQQRL 412
           M    + + L R    + HIII T     D ++        KL  +++DE  R      L
Sbjct: 229 MNMMDQARDLMR----KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRL-----L 279

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEV 471
            +        +L +  T    T + ++     I K+ ++ +   P+K  +      +D +
Sbjct: 280 DMEFGPVLDRILKIIPTQERTTYLFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTL 338

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMS 526
           ++ L VV    K  Y I    E   ++       ++  ER + L      S   +HG ++
Sbjct: 339 VQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLN 398

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              +   +D FK G   +L+AT V   G+D+    I++  +      + +H++ GR  R 
Sbjct: 399 QNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRV-GRTARA 457


>gi|167041353|gb|ABZ06107.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
           HF4000_005I08]
          Length = 416

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 146/335 (43%), Gaps = 56/335 (16%)

Query: 261 IAQKILRNIP----FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV-ALIAMA 315
           +AQ ILR I      +PT  Q  +I  +L+       +L + Q   G+GKT   AL  + 
Sbjct: 9   LAQPILRAIADEGYTTPTPIQGKSIPPLLEGRD----LLGVAQ--TGTGKTAAFALPLLH 62

Query: 316 AAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
              +  G+       A+I+AP   LA Q  +  + Y ++ ++   ++ G +     R+ +
Sbjct: 63  RLADNAGKSHPRQPLALILAPTRELAGQIGDSFRTYGRHLRLRTGVVFGGVSI---RRQI 119

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAP-- 421
           + +A G  H+++ T     D +    L L      I+DE  R      ++  +K TA   
Sbjct: 120 QTLARG-VHVLVATPGRLIDLMNRGDLRLDAVEVFILDEADRMLDMGFIRDVKKITAALP 178

Query: 422 ---HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                LL +AT +P+++    L    +S          P++    P +   E ++++ + 
Sbjct: 179 KRRQTLLFSAT-MPKSV--QGLAADLLSN---------PVRVEAAPASTTVEKVDQMVLF 226

Query: 479 LSEGKKAYWICPQIEEK---------KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           + + KK   +   + +K         +  +  + V R+  LH+    S AI HG  +   
Sbjct: 227 VPKDKKRALLGELLNDKDMARVLIFTRTKHGANRVARY--LHDRGIHSDAI-HGNKAQNA 283

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           ++  +D F++G  + L+AT +   GIDV   + +I
Sbjct: 284 RQRALDGFRSGRIRALVATDIAARGIDVEGVTHVI 318


>gi|170719699|ref|YP_001747387.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida W619]
 gi|169757702|gb|ACA71018.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 461

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 95/435 (21%), Positives = 175/435 (40%), Gaps = 71/435 (16%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I Q   GSGKT    I +   +     G QA+++ P   LA Q  + +++  +    I +
Sbjct: 47  IAQAKTGSGKTAAFGIGLLNPINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKI 106

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFG 407
             + G +    +  +LE   HG AHII+GT    Q  +    L+L     +++DE  R  
Sbjct: 107 LTLCGGVSLGPQIASLE---HG-AHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRM- 161

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG---------RKPI 458
                 L          ++  TP  R  +L S            PAG         RKP 
Sbjct: 162 ------LDMGFFDAIASIIGKTPSRRQTLLFS---------ATYPAGIEQLAADFMRKPQ 206

Query: 459 KTVIIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           +  +  ++  +++ +R   +  + +      +      +    F    ++   +  H T+
Sbjct: 207 QVKVESLHTDNQIEQRFIEIDPQQRLEAVTRVLGHYRPQSCVAFCFTKQQCEDVVAHLTA 266

Query: 517 SIAI---IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +   +HG +   D++ V+  F N +  +L+AT V   G+D+    ++I  N E    
Sbjct: 267 KGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVAARGLDIDGLDMVI--NVELARD 324

Query: 574 AQLHQLR-GRVGRGEEISSCILLYHP----------PLSKN--SYTRLSVLKNTEDGFL- 619
           A++H  R GR GR  E    + L  P           L K+   + +L  LKN     L 
Sbjct: 325 AEIHVHRVGRTGRAGEKGIAVSLVAPAEGHRAQAIEALQKSPLRWDQLDSLKNKGGELLL 384

Query: 620 -------IAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAKHILT 668
                  IA     + + G+ILG     +G+P   + +  + D  + + + R  AK  + 
Sbjct: 385 PVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQVGKIAIFDFQAFVAVERALAKQAM- 443

Query: 669 QDPDLTSVRGQSIRI 683
           Q  +   ++G+++++
Sbjct: 444 QRLNSGKIKGRALKV 458


>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
 gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
 gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 481

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 122/297 (41%), Gaps = 51/297 (17%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQ-AHRRKALERIAHGQAHI 378
           +A+I+ P   LA Q    +  Y ++T +   ++ G +   PQ A  R+ +E        I
Sbjct: 89  RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVE--------I 140

Query: 379 IIGTHALFQDSIQYY-----KLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLM 426
           +I T     D +Q       ++ ++++DE  R         +Q+ L L  K      LL 
Sbjct: 141 LIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER--QTLLF 198

Query: 427 TATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-K 483
           +AT  P  + L  T L +    ++    A    +  ++  +   D+    +K++     K
Sbjct: 199 SATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLK 258

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +    C         N +    R     E      A IHG  S  ++   +D+FK G  +
Sbjct: 259 QVIVFC---------NSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIE 309

Query: 544 LLIATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGR----GEEISSC 592
            L+AT V   G+D+ +   +I      NAE +    +H++ GR GR    G+ +S C
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDY----VHRI-GRTGRAGASGDALSLC 361


>gi|158293651|ref|XP_315003.3| AGAP004912-PB [Anopheles gambiae str. PEST]
 gi|157016550|gb|EAA10492.4| AGAP004912-PB [Anopheles gambiae str. PEST]
          Length = 705

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHFGLAQL 576
           IHG  S  D++ V+++F+  T  +L+AT V   G+DV D   +I      N E +    +
Sbjct: 381 IHGDKSQKDRDYVLNTFRRSTNGILVATDVASRGLDVDDVKFVINFDFPNNTEDY----V 436

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           H++ GR GR     +    + P  S  +   ++VL++  
Sbjct: 437 HRI-GRTGRSTNKGTSYTFFTPANSSKAPDLITVLQDAN 474


>gi|21410145|gb|AAH30895.1| Ddx21 protein [Mus musculus]
          Length = 689

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 137/335 (40%), Gaps = 53/335 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---------GQAVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++ G          Q +++AP   LA Q  +     T+ 
Sbjct: 137 IAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITK- 195

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +   +ER+  G   I++GT    +D +Q  KL L     V++DE
Sbjct: 196 -KLSVACFYGGTPYGGQ---IERMRSG-IDILVGTPGRIKDHLQNGKLDLTKLKHVVLDE 250

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTATP------IPRTLVLTSLGDID-I 445
             +         V++ L +  K  +   P  LL +AT       + +  + ++   +D I
Sbjct: 251 VDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 310

Query: 446 SKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
            K T+K A    ++ + I  +   R   + + ++V      +    C   ++ +E +  +
Sbjct: 311 GKKTQKAA--ITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNT 368

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +++              +HG +    +E  +  F+NG   +L+AT V   G+D+ +  +
Sbjct: 369 CIKQ----------DAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDL 418

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++         + +H+  GR GR      CI  Y 
Sbjct: 419 VVQSCPPKDVESYIHR-SGRTGRAGRTGVCICFYQ 452


>gi|66048172|ref|YP_238013.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258879|gb|AAY39975.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. syringae
           B728a]
          Length = 649

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 118/276 (42%), Gaps = 35/276 (12%)

Query: 386 FQDSIQYYKLILVIVDEQH---RFGVQQR---LKL---TQKATAPHVLLMTATPIPRTLV 436
           F++ I    + L++VDE H    +G   R   LKL    ++   P  LL+TAT  P+ ++
Sbjct: 124 FRNFIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQREFNIPQTLLLTATATPQVII 183

Query: 437 -LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +     I    +      R  +   + P++  D+   RL   L+E +    I     +K
Sbjct: 184 DMQDKFAIAPEDVITTGFYRANLHLWVKPVSGRDKR-RRLVEWLNERRGQPTIVYVTLQK 242

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              +  + +E+ N L        +  H  + +  +ES+   F  G    ++AT    +GI
Sbjct: 243 TAEHIAAHLEQ-NGL------PASAYHAGLPNDQRESIQKQFMGGHLNCIVATIAFGMGI 295

Query: 556 DVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           D  D     I N  HF L +      Q  GR GR    S C++L     +++S   L+VL
Sbjct: 296 DKSD-----IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVL----ANRDS---LNVL 343

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           +N   G     E + +  E ++LG +  G  +FL+ 
Sbjct: 344 ENFVYGDTPEREGIARVLE-DLLGARHDGQWEFLLG 378


>gi|308160174|gb|EFO62674.1| ATP-dependent RNA helicase HAS1, putative [Giardia lamblia P15]
          Length = 547

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 141/380 (37%), Gaps = 69/380 (18%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV------------- 302
           + E    Q+I+   PFS T S    + + +  M  KN M RI +  +             
Sbjct: 16  DAENAKYQEIMTETPFSET-SLSPFLLEAVDAMGHKN-MTRIQEASIPVILSGRNMTAKA 73

Query: 303 --GSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
             GSGK+L  L+     +         G   +++ P   LA Q Y    +    T I V 
Sbjct: 74  HTGSGKSLAFLLPAIDLIHKANMKLHHGTGVIVLTPTRELALQLYNVATQLISATNITVG 133

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY------KLILVIVDEQH--- 404
           +  G      R+K    +  G A ++I T     D +         KL ++I+DE     
Sbjct: 134 LAIGG---TSRQKEANHLCKG-ASVVIATPGRLCDHLNNTPGFKTDKLFMLILDEADMLL 189

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            +G QQ L+         +L M   P  R +   S    D  K  E P      +T++  
Sbjct: 190 EYGFQQELEA--------ILRMLPGPKLRQVCFFSATMSD--KCLEVPHMEVDKETLV-- 237

Query: 465 INRIDEVIERLKVVLSEGKKAYWICP-------------QIEEKKESNFRSVVERFNSLH 511
             RI+  ++      +  ++ Y ICP             +  +KK   F S  +     +
Sbjct: 238 --RINTDVKSSAATRAHFEQGYIICPPEQRFLLLYTFMKRRSDKKIIVFLSSRDSVEFYY 295

Query: 512 EHF----TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           E       +SI ++ G M    +    + F N    +L+AT V   G+D+     +I  +
Sbjct: 296 EFLRFIGMASILMLDGGMKQKQRMETYNKFCNAQSGVLLATNVAARGLDLPAIDYVIQFD 355

Query: 568 AEHFGLAQLHQLRGRVGRGE 587
                 + +H+  GR  RG+
Sbjct: 356 PPESVESYIHRA-GRACRGD 374


>gi|163942044|ref|YP_001646928.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229013506|ref|ZP_04170641.1| ATP-dependent RNA helicase yqfR [Bacillus mycoides DSM 2048]
 gi|229061981|ref|ZP_04199307.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH603]
 gi|229135112|ref|ZP_04263914.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST196]
 gi|229169035|ref|ZP_04296751.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH621]
 gi|163864241|gb|ABY45300.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
 gi|228614444|gb|EEK71553.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH621]
 gi|228648341|gb|EEL04374.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST196]
 gi|228717290|gb|EEL68963.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH603]
 gi|228747787|gb|EEL97655.1| ATP-dependent RNA helicase yqfR [Bacillus mycoides DSM 2048]
          Length = 436

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 137/325 (42%), Gaps = 40/325 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYT----QNTQ 349
           I Q   GSGKT   L+     ++A     Q VI AP   LAQQ YE I K T    ++  
Sbjct: 45  IGQSQTGSGKTHAYLLPTLNRIDASREEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQM 104

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQH 404
           I    + G      +++++E++   Q HI++GT    +D ++      YK   +IVDE  
Sbjct: 105 ITARCLIGG---TDKQRSIEKLKK-QPHIVVGTPGRIKDLVEEKALFVYKADTIIVDEAD 160

Query: 405 ---RFG-VQQRLKLTQKATAPHVLLMTATPIPRTL---VLTSLGDIDISKITEKPAGRKP 457
                G +Q   K+  +      +L+ +  IP+ L   +   + + +   I  K      
Sbjct: 161 LMLDMGFIQDVDKIAARMPKNLQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGN 220

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           I   ++P +R     E +K +L + K    I     +KK        E  + L E     
Sbjct: 221 IDHYLVP-SRHRNKTELVKNMLLQFKPYLAIVFTNTKKKAD------EVADGLAER-GLK 272

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHFGL 573
           +  IHG +S  D+  +M   ++   + ++AT +   GID+   S +I      + + F  
Sbjct: 273 VGRIHGDLSPRDRRKMMKQVRDLEFQYIVATDLAARGIDIEGISHVINYELPPDLDFF-- 330

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
             +H++ GR  R       + +Y P
Sbjct: 331 --VHRV-GRTARAGHSGIAVTIYDP 352


>gi|114764457|ref|ZP_01443682.1| primosomal protein N' [Pelagibaca bermudensis HTCC2601]
 gi|114543024|gb|EAU46043.1| primosomal protein N' [Roseovarius sp. HTCC2601]
          Length = 729

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 22/185 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            + Q +A + + + ++       +L+G  GSGKT V L A+A  +  G QA+++ P   L
Sbjct: 196 AEDQAAAAQSLREGVASGRYGTVLLKGVTGSGKTEVYLEAVAECLAQGRQALVLLPEIAL 255

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQY 392
                EF+ +               +    RR+  +++A G A +++G   ALF   + +
Sbjct: 256 TS---EFLTRVEARFGAKPAEWHSGVTVTERRRVWKQVAQGGAQLVVGARSALF---LPF 309

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKA----------TAPHVLLMTATPIPRTLVLTSLGD 442
             L L +VDE+H    +Q   +   A           +  V+L +ATP      L S  +
Sbjct: 310 RDLGLTVVDEEHDTSYKQDEGVLYNARDMAVLRASICSGRVVLASATP-----SLESWAN 364

Query: 443 IDISK 447
            D  K
Sbjct: 365 ADAGK 369


>gi|147921158|ref|YP_685031.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
 gi|110620427|emb|CAJ35705.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
          Length = 937

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 142/370 (38%), Gaps = 53/370 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA-------MAAAVEAGGQAV 325
           PT +Q+ AI  IL           +L    G+GKT  AL+        M++    G + +
Sbjct: 24  PTGTQQKAIPAILSGGHV------LLIAPTGTGKTESALLPAFDLLMRMSSEEREGIKVL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
            + P+  L +   + ++ +     + +++  G+     RR    R A     I+I T   
Sbjct: 78  YITPLRALNRDMMKRMRWWAGRLDLNIDVRHGDTTTHERR----RQALKPPDILITTPET 133

Query: 386 FQDSIQYYK-------LILVIVDEQHRFGVQQRLKLTQKATAPHVL----------LMTA 428
            Q  +   +       L +VIVDE H     +R   TQ A A   L          L   
Sbjct: 134 VQAMLMGSRMRENLKSLAMVIVDEVHELASSKRG--TQMAIALERLGRYTEFRRIGLSAT 191

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
              P  +     G    ++I E    +     V  P   ID      K +L++   A  I
Sbjct: 192 VGTPGEVAKFLAGTGREAQIVEVKLAKSLDFHVTYP-ETIDSDKPLSKKLLTDPDIAAQI 250

Query: 489 CPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
              I+  K +       N R   E   +       +IA+ HG +S   +    DSFK+G 
Sbjct: 251 RTMIDLIKRNRSTLMFVNTRQSAEAIGARFRKLDQAIAVHHGSLSKEARIEAEDSFKDGK 310

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-----GEEISSCILLY 596
              L+ T+ +E+GID+ D   +I    ++    ++ +L  RVGR     GE  S  I+  
Sbjct: 311 VNALVCTSSMELGIDIGDIDHVI----QYMSPREVSRLLQRVGRAGHSIGETSSGTIITI 366

Query: 597 HPPLSKNSYT 606
           +   S  ++ 
Sbjct: 367 NEDDSAEAWA 376


>gi|330962111|gb|EGH62371.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 644

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 35/276 (12%)

Query: 386 FQDSIQYYKLILVIVDEQH---RFGVQQR---LKL---TQKATAPHVLLMTATPIPRTLV 436
           F++ I    + L++VDE H    +G   R   LKL    ++   P  LL+TAT  P+ ++
Sbjct: 119 FRNFIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQREFNIPQALLLTATATPQVII 178

Query: 437 -LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +     I    +      R  +   + P++  D+   R  V    GK+       +  +
Sbjct: 179 DMQDKFAIAPEDVITTGFYRANLHLWVTPVSGRDK--RRRLVEWLNGKRGQPTIVYVTLQ 236

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           K + + +     N L        +  H  + +  +ES+   F  G+   ++AT    +GI
Sbjct: 237 KTAEYIAAHLEQNGL------PASAYHAGLPNDQRESIQKRFMGGSLNCIVATIAFGMGI 290

Query: 556 DVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           D  D     I N  HF L +      Q  GR GR    S C++L     +++S   L+VL
Sbjct: 291 DKSD-----IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVL----ANRDS---LNVL 338

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           +N   G     E +  R   ++L  +  G  +FL+ 
Sbjct: 339 ENFVYGDTPEREGIA-RVLDDLLNARHDGQWEFLLG 373


>gi|325479495|gb|EGC82591.1| primosomal protein N' [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 594

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 85/199 (42%), Gaps = 23/199 (11%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP- 329
           F     QE A   I +D   K     +L G  GSGKT + L  +   ++ G QA+I+ P 
Sbjct: 59  FDLNYEQEKAFNLINEDRQGK----FLLYGVTGSGKTEIFLQVVEEILKEGKQAIILVPE 114

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQD 388
           I +  Q    F  ++ +     + I   N+    +      I +G+ +I IG   A+F  
Sbjct: 115 ISLTPQTIERFRGRFNEK----IAIFHSNLTPKEKFNQWRMINNGEVNIAIGARSAIFA- 169

Query: 389 SIQYYKLILVIVDEQH----------RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
              +  L ++I+DE+H          +F   +  K      + +++L +ATP   ++   
Sbjct: 170 --PFKNLGIIIIDEEHDQSYISSMDPKFHTAEIAKKRADYNSCNLILASATPSITSMQDV 227

Query: 439 SLGDIDISKITEKPAGRKP 457
           + G++ + K+  +     P
Sbjct: 228 NKGELKLIKLENRVNNNMP 246


>gi|322384200|ref|ZP_08057910.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321151092|gb|EFX44409.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 486

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 132/326 (40%), Gaps = 46/326 (14%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + +   ++       A++M P   LA Q  E I K  +   I   
Sbjct: 24  IGQAQTGTGKTAAFGVPLINKIDTAADKIVALVMCPTRELAIQVAEEISKLGRFKGIRSL 83

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            I G      + +AL++    +  IIIGT     D I    + L     V++DE      
Sbjct: 84  PIYGGQDIVKQIRALKK----KPQIIIGTPGRLLDHINRKTIKLEGVETVVLDEADEMLD 139

Query: 407 -GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G    ++  L+Q     H +L +AT  P           +I K+  +   R P    +I
Sbjct: 140 MGFMDDIQSILSQVPEERHTMLFSATMPP-----------NIQKLAHQFL-RNPQHVSVI 187

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIE-EKKESN--FRSVVERFNSLHEHFTS---S 517
           P      +I +  + + E +K   +   ++ E  E    F     R + L E       +
Sbjct: 188 PKQVSAPLIAQAYIEVHEKQKFEALSRLLDMEAPELAIIFGRTKRRVDELSEALQKRGYA 247

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ-- 575
              +HG +S   +++VM  F++G+  +L+AT V   G+DV   S +I     +F L Q  
Sbjct: 248 AEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDVSGVSHVI-----NFDLPQDP 302

Query: 576 ---LHQLRGRVGRGEEISSCILLYHP 598
              +H++ GR GR  +  +      P
Sbjct: 303 ESYVHRI-GRTGRAGKEGTAWTFVTP 327


>gi|296502998|ref|YP_003664698.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|296324050|gb|ADH06978.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 455

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 43  IGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINV 102

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 103 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 158

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 159 YFGFLYDIEDILDETPGSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 207

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 208 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 264

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 265 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVES 324

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 325 Y----IHRI-GRTGRA 335


>gi|269960571|ref|ZP_06174943.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834648|gb|EEZ88735.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 641

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 137/331 (41%), Gaps = 46/331 (13%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            GSGK+L   +    A +     ++++P+  L +    F+    Q   I    I  +  +
Sbjct: 42  TGSGKSLCYQLP---ATQLPHLTLVISPLLALMKDQLSFL----QGRGIAAASIDSSQSR 94

Query: 362 AHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQH---RFGVQQR-- 411
              ++ +  + +G   I++ +     +  F++ I+   L L++VDE H    +G   R  
Sbjct: 95  EETQQVMAGVKNGHIKILMISVERLKNERFREFIRQIPLSLMVVDEAHCISEWGHNFRPD 154

Query: 412 -LKLTQ---KATAPHVLLMTATPIPRTLV-LTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
            LK+ Q   +   P  LL+TAT  P  +  + S  DI    IT     R  +   ++P  
Sbjct: 155 YLKVPQYQRELNIPQTLLLTATATPAVIEDMQSKFDIAGENITVTGFYRSNLDISVLPYE 214

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
             +++ +   ++ +  K    +    ++  E    S++    + H +         G  S
Sbjct: 215 EENKLTQLSDIIAAAPKLPSIVYVTQQQTAEQVANSLIRLGINAHAYHA-------GMKS 267

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGR 582
           DI +E +   F +     ++AT    +G+D  D   +I     HF L +      Q  GR
Sbjct: 268 DI-REKIQQQFMDSQIDCIVATIAFGMGVDKSDIRRVI-----HFDLPKSIENYAQEIGR 321

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            GR  + S CILL        + + L+VL+N
Sbjct: 322 AGRDGQRSECILL-------GNTSGLTVLEN 345


>gi|262283179|ref|ZP_06060946.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
 gi|262261431|gb|EEY80130.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
          Length = 523

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 131/335 (39%), Gaps = 38/335 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT          ++      QA+++AP   LA Q  E + ++ ++  + V 
Sbjct: 42  IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALVIAPTRELAVQSQEELFRFGRSKGVKVR 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
            + G      + KAL+      AHI++GT     D I        Q   LIL   DE   
Sbjct: 102 SVYGGSSIEKQIKALK----SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLN 157

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G  + ++           +++  P  R  +L S    D  K       ++P    I   
Sbjct: 158 MGFLEDIES----------IISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK 207

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI----- 520
               E++++  + + E +K +    ++ + ++     V  R     +  T  + I     
Sbjct: 208 ELTTELVDQYYIRVKENEK-FDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRA 266

Query: 521 --IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG +    +  V+  FKNG   +L+AT V   G+D+   + +   +      + +H+
Sbjct: 267 EGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHR 326

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + GR GR  +    I    P    N    L +++N
Sbjct: 327 I-GRTGRAGKSGQSITFVAP----NEMGYLQIIEN 356


>gi|257870943|ref|ZP_05650596.1| helicase [Enterococcus gallinarum EG2]
 gi|257805107|gb|EEV33929.1| helicase [Enterococcus gallinarum EG2]
          Length = 502

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 138/337 (40%), Gaps = 42/337 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    + M   ++      Q +++AP   LA Q  E + +  ++ +I V+
Sbjct: 42  IGQAQTGTGKTAAFGLPMLEKIDPANHQLQGLVIAPTRELAIQTQEELYRLGKDKKIRVQ 101

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHR 405
            + G      + + L+     + HI++GT     D I  + L L  V        DE   
Sbjct: 102 AVYGGADIGRQIRQLK----DRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLN 157

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  + ++  ++Q       LL +AT  P    + S+G     K  + P   + IK   +
Sbjct: 158 MGFLEDIEKIISQVPEERQTLLFSATMPP---AIKSIG----VKFMKNPEHVQ-IKAKEM 209

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--- 520
             + ID+       V S+  + + I  ++ + +      V  R     +     +     
Sbjct: 210 TADLIDQY-----YVRSKDYEKFDIMTRLLDVQTPELTIVFGRTKRRVDELARGLEARGY 264

Query: 521 ----IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG +S   + SV+ SFK+G   +L+AT V   G+D+   + +   +      + +
Sbjct: 265 KAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYV 324

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           H++ GR GR  +    +    P    N  + L V++N
Sbjct: 325 HRI-GRTGRAGKGGISVTFVTP----NEMSYLHVIEN 356


>gi|240949474|ref|ZP_04753814.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor NM305]
 gi|240296047|gb|EER46708.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor NM305]
          Length = 604

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 95/233 (40%), Gaps = 49/233 (21%)

Query: 390 IQYYKLILVIVDEQH---RFGVQQRLKLTQ----KATAPHVLLM----TATPIPRTLVL- 437
           I + K+ L+ VDE H   ++G   R + T     ++T P+V +M    TA P  R  ++ 
Sbjct: 129 ISHCKISLIAVDEAHCVSQWGHDFRPEYTLLGGLRSTFPNVPMMALTATADPTTRHDIIH 188

Query: 438 --------TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                   T LG  D      +P  R  ++    P+ ++ + I +      +GK     C
Sbjct: 189 HLRLQEPHTYLGSFD------RPNIRYTVQEKFKPMEQLAKFIAK-----QQGKSGIVYC 237

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N R  VE           S+   H  M+   +E+V ++F+    ++++AT 
Sbjct: 238 ---------NSRKKVEEITEKLSARGVSVMGYHAGMTIQQRETVQNAFQRDNIQVVVATI 288

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHP 598
              +GI+  +   +      HF L +     +Q  GR GR +  S  IL Y P
Sbjct: 289 AFGMGINKSNVRFV-----AHFDLPRSIESYYQETGRAGRDDLPSEAILFYDP 336


>gi|323340706|ref|ZP_08080958.1| primosome assembly protein PriA [Lactobacillus ruminis ATCC 25644]
 gi|323091829|gb|EFZ34449.1| primosome assembly protein PriA [Lactobacillus ruminis ATCC 25644]
          Length = 810

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 5/141 (3%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P   T  Q   +  I Q + Q+   + +LQG  GSGKT V L  +A A++   +A+++ P
Sbjct: 271 PRKLTAEQNVCVTRINQAIEQEESDVFLLQGVTGSGKTEVYLQTIAHALKLSKKALMLVP 330

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q    +++        V ++   +    R     RI  G+A +++G  +     
Sbjct: 331 EISLTPQ---MVRRVKGRFGPKVAMLHSALSDGERFDEWRRIERGEAQVVVGARSAVFAP 387

Query: 390 IQYYKLILVIVDEQHRFGVQQ 410
           +   ++ ++I+DE+H    +Q
Sbjct: 388 LD--RIGIIIMDEEHETSYKQ 406


>gi|158259343|dbj|BAF85630.1| unnamed protein product [Homo sapiens]
          Length = 1025

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 11/77 (14%)

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ----LHQLR 580
           M+  +++ V+  F+ G   LLIATTV E G+D+ + +I+I      +GL      + Q R
Sbjct: 766 MTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQAR 820

Query: 581 GRVGRGEEISSCILLYH 597
           GR  R +E S+C+L+ H
Sbjct: 821 GR-ARADE-STCVLVAH 835


>gi|149038677|gb|EDL92966.1| rCG22008, isoform CRA_c [Rattus norvegicus]
          Length = 638

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 137/335 (40%), Gaps = 53/335 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---------GQAVIMAPIGILAQQHYEFIKKYTQN 347
           I Q   G+GKT    I +   ++ G          Q +++AP   LA Q  +     T+ 
Sbjct: 79  IAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITK- 137

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDE 402
            ++ V    G  P   +   +ER+  G   I++GT    +D +Q  KL L     V++DE
Sbjct: 138 -KLSVACFYGGTPYGGQ---IERMRSG-IDILVGTPGRIKDHLQNGKLDLTKLKHVVLDE 192

Query: 403 QHRF-------GVQQRLKLTQKATA---PHVLLMTATP------IPRTLVLTSLGDID-I 445
             +         V++ L +  K  +   P  LL +AT       + +  + ++   +D I
Sbjct: 193 VDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 252

Query: 446 SKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
            K T+K A    ++ + I  +   R   + + ++V      +    C   ++ +E +  +
Sbjct: 253 GKKTQKAA--ITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNT 310

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +++              +HG +    +E  +  F+NG   +L+AT V   G+D+ +  +
Sbjct: 311 CIKQ----------DAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDL 360

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++         + +H+  GR GR      CI  Y 
Sbjct: 361 VVQSCPPKDVESYIHR-SGRTGRAGRTGVCICFYQ 394


>gi|295399761|ref|ZP_06809742.1| primosomal protein N' [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978164|gb|EFG53761.1| primosomal protein N' [Geobacillus thermoglucosidasius C56-YS93]
          Length = 804

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P S T  QE A+  +++ +      + +L G  GSGKT V + A+   +  G +A+++ P
Sbjct: 264 PLSLTAEQEKALSSVIESVRTNKHEVFLLYGVTGSGKTEVYMQAIEEVLRQGKEAIVLVP 323

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQD 388
              L  Q    +K++       V ++   +    +     +I   +  +++G   A+F  
Sbjct: 324 EISLTPQ---MVKRFKGRFGSQVAVLHSGLSIGEKYDEWRKIHRKEVQLVVGARSAIFAP 380

Query: 389 SIQYYKLILVIVDEQHRFGVQQ 410
              +  L ++I+DE+H    +Q
Sbjct: 381 ---FENLGMIIIDEEHETSYKQ 399


>gi|49477717|ref|YP_036595.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118477863|ref|YP_895014.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196033783|ref|ZP_03101194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196043209|ref|ZP_03110447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225864437|ref|YP_002749815.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|228927528|ref|ZP_04090581.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228946079|ref|ZP_04108415.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229122021|ref|ZP_04251237.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201]
 gi|49329273|gb|AAT59919.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118417088|gb|ABK85507.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|195993463|gb|EDX57420.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196025518|gb|EDX64187.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225786741|gb|ACO26958.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|228661364|gb|EEL16988.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201]
 gi|228813592|gb|EEM59877.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228832136|gb|EEM77720.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 450

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 49/316 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 46  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 105

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 106 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 162 YFGFLYDIEDILDETPGSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 210

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 211 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVES 327

Query: 571 FGLAQLHQLRGRVGRG 586
           +    +H++ GR GR 
Sbjct: 328 Y----IHRI-GRTGRA 338


>gi|56698644|ref|YP_169021.1| DEAD-box ATP dependent DNA helicase [Ruegeria pomeroyi DSS-3]
 gi|56680381|gb|AAV97047.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Ruegeria pomeroyi
           DSS-3]
          Length = 709

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 136/333 (40%), Gaps = 46/333 (13%)

Query: 283 DILQDMSQKNRMLRILQGDV------GSGKTLVALIAMAAAV---------EAGGQAVIM 327
           D L D+ Q      +   D+      GSGKT+   +A+A  +          A   A+I+
Sbjct: 42  DTLTDVQQAVTDPELASADLLVSARTGSGKTVGFGLAIAPTLLGEAETLGPPAAPLALIV 101

Query: 328 APIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           AP   LA Q   E    + +    I   I G M     R+ LER     AHI++GT    
Sbjct: 102 APTRELALQVSRELTWLFAKAGGRIATCI-GGMDARTERRTLER----GAHIVVGTPGRL 156

Query: 387 QDSIQYYKLIL-----VIVDEQHR---FGVQQRLK--LTQKATAPHVLLMTATPIPRTLV 436
           +D I    L L     V++DE       G ++ L+  L +       LL +AT       
Sbjct: 157 RDHITRGALDLADIRAVVLDEADEMLDLGFREDLEFMLGEAPEDRRTLLFSAT------- 209

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
             S    +++K  ++ A R  I T+       D   + ++V   +G+ A     +  +  
Sbjct: 210 -VSPAIAELAKTYQRQAAR--ISTLGGERQHSDISYQAVQVSGGDGEHAIINLLRFHDAP 266

Query: 497 ES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            +    N R+ V R  +   +   ++  + G +S  ++   + + ++G  ++ +AT V  
Sbjct: 267 TAIVFANTRAAVARLTARLANRGFAVVSLSGELSQDERSHALQAMRDGRARVCVATDVAA 326

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            GID+ +  ++I  +        LH+  GR GR
Sbjct: 327 RGIDLPNLDLVIHADLPTNTEGLLHR-SGRTGR 358


>gi|15615072|ref|NP_243375.1| primosome assembly protein PriA [Bacillus halodurans C-125]
 gi|10175129|dbj|BAB06228.1| primosomal replication factor Y [Bacillus halodurans C-125]
          Length = 804

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 97/232 (41%), Gaps = 20/232 (8%)

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           LM K   KEI   +  +  + + + R  P   T +Q++    I + + +      +L G 
Sbjct: 236 LMDKGLVKEIEEEVYRDPFLEKDVERTEPLPLTIAQQNVATPIARSIEENRHEPFLLHGV 295

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            GSGKT + L A+   +  G QA+++ P I +  Q  + F  ++       V ++   + 
Sbjct: 296 TGSGKTEIYLQAINRVLAKGKQAIVLVPEISLTPQMVHRFRSRFGSK----VAVMHSGLS 351

Query: 361 QAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQH----------RFGVQ 409
              +     +I   +  +++G   A+F     +  L ++I+DE+H          R+  +
Sbjct: 352 VGEKYDEWRKIHRREVQVVVGARSAIFAP---FENLGIIIIDEEHESTYKQEEAPRYHAR 408

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                  +     V+L +ATP   +      G   +  +TE+   R P+ TV
Sbjct: 409 DVAMFRGRYHRCPVILGSATPALESYARAKKGVYTLLSLTERVNDR-PMPTV 459


>gi|323310025|gb|EGA63220.1| Prp5p [Saccharomyces cerevisiae FostersO]
          Length = 849

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 156/396 (39%), Gaps = 78/396 (19%)

Query: 302 VGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQII 351
            GSGKT+  L+ +   V         E G   +I+AP   LA Q +E + K+T+ +T I 
Sbjct: 302 TGSGKTISYLLPLLRQVKAQRPLSKHETGPMCLILAPTRELALQIHEEVTKFTEADTSIR 361

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD--------SIQYYKLILVIVDEQ 403
               TG    +  +K +  +  G   I++ T   F D         +   ++  V++DE 
Sbjct: 362 SVCCTGG---SEMKKQITDLKRG-TEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEA 417

Query: 404 HRF---GVQQRLKLTQKATAP--HVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGR 455
            R    G + ++    K   P    +L +AT  P   R+  +  L               
Sbjct: 418 DRLFDLGFEPQITQIMKTVRPDKQCVLFSAT-FPNKLRSFAVRVL--------------H 462

Query: 456 KPIKTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKE---------SNFRSVVE 505
            PI   I     ++E V ++ ++  SE +K   +   I E+ E             S VE
Sbjct: 463 SPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIYERSEFFDEVQSENDGQSSDVE 522

Query: 506 RFNSLHEHFTSSIAI-----------------IHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             ++    F SS  I                 IH      ++   ++ FK     +L+ T
Sbjct: 523 EVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKREKNSILLCT 582

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPLSKNSYTR 607
            V+  G++V + S++II NA     AQ     GR  RG    + I LL H  LS  +Y  
Sbjct: 583 EVLSRGLNVPEVSLVIIYNAVK-TFAQYVHTTGRTARGSRSGTAITLLLHDELS-GAYIL 640

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
              +++ E   + A   L+ ++  E+    +SGM K
Sbjct: 641 SKAMRDEE---IKASNSLQAKELQEMSAKFESGMKK 673


>gi|312376439|gb|EFR23520.1| hypothetical protein AND_12717 [Anopheles darlingi]
          Length = 696

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 136/334 (40%), Gaps = 35/334 (10%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL  LI     ++         G  A+I++P   LAQQ  +    + +  +    
Sbjct: 142 TGSGKTLSYLIPALIHIDQQPRLRRGDGPIALILSPTRELAQQIKQVADDFGRALKYKNT 201

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR--- 405
            + G      +RK  E + +G   I+I T     D +   +  L     +++DE  R   
Sbjct: 202 CLFGG---GKKRKQQEDLEYG-VEIVIATPGRLIDFLSMNQTNLRRCSYLVLDEADRMLD 257

Query: 406 --FGVQQRLKLTQKATAPHVLLMTAT--PIPRTLVLTSLGD-IDISKITEKPAGRKPIKT 460
             F  Q R  + Q       L+ +AT   +   LV   L D + I+  + K A    I  
Sbjct: 258 MGFEPQIRTIIEQIRPDRQTLMWSATWPDVVARLVKDYLKDYVQINVGSLKLAANHNILQ 317

Query: 461 VIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            II + +  E   +L ++L E   +K       IE KK       V+      +      
Sbjct: 318 -IIDVCQESEKESKLSILLREIMAEKECKTIIFIETKKR------VDDITRKVKRDGWPA 370

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG  S  +++S + SF++G   +LIAT V   G+DV D   +I  +        +H+
Sbjct: 371 RCIHGDKSQNERDSTLKSFRSGRTPILIATDVAARGLDVDDVKFVINFDFPTTSEDYIHR 430

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           + GR GR +   +    + P  +  +   + VLK
Sbjct: 431 I-GRTGRCDNTGTAYTFFTPNNAAKARDLIDVLK 463


>gi|237794935|ref|YP_002862487.1| helicase, Snf2 family [Clostridium botulinum Ba4 str. 657]
 gi|229261620|gb|ACQ52653.1| helicase, Snf2 family [Clostridium botulinum Ba4 str. 657]
          Length = 1097

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 125/282 (44%), Gaps = 32/282 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           IL  ++G GKT+  +  + +  E G +++I+ P  ++     EF +K+ +  +I V  I 
Sbjct: 669 ILADEMGLGKTIQTISFLLS--EKGTRSLIVTPTSLIYNWQDEF-QKFAETLKIGV--IH 723

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI---LVIVDEQHRFG--VQQR 411
           G   +  R K L+     +  +++ T+   ++ IQ YK I     I+DE       + Q 
Sbjct: 724 G--SKEERMKVLD--GREEYDVLLTTYGTLKNDIQLYKDITFDYCIIDEGQNIKNPLAQS 779

Query: 412 LKLTQKATAPHVLLMTATPIPRTLV-LTSLGDIDISKI--TEKPAGRKPIKTVIIPINRI 468
               ++  +     +T TPI   L+ L S+ D  +     +E+    K I  V   I+++
Sbjct: 780 TDSVKRINSKVRFALTGTPIENNLMELWSIFDFIMPGYLYSEERFQEKFIDEVEENIDKL 839

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKK-------------ESNFRSVVERF-NSLHEHF 514
             +I R  ++  E K      P   EKK             ++  +S+ E+  N+  +  
Sbjct: 840 KTLI-RPFILRREKKDVLKDLPHKIEKKFLVEMTTNQERIYKAYMKSIKEKLKNNKEDKI 898

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           T    +   R   +D   ++D +K G+ KL IA  ++E G+D
Sbjct: 899 TIFSYLTRLRQLCLDPSIIIDEYKGGSSKLRIAMELVEEGVD 940


>gi|229000239|ref|ZP_04159808.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock3-17]
 gi|228759571|gb|EEM08548.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock3-17]
          Length = 481

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 130/325 (40%), Gaps = 44/325 (13%)

Query: 297 ILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           +++   GSGKT    + L  M    E   QA+I+ P   LA Q  E I    +  +I   
Sbjct: 45  VVKSQTGSGKTASFGIPLCEMIEWEENKPQALILTPTRELAVQVKEDITNIGRFKRIKAT 104

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHR--- 405
            + G  P A ++  L++    + HI++GT     D I+       +L  +++DE      
Sbjct: 105 AVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLN 160

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             F  Q    + +  T    +L +AT +P  +        ++S    K      IK   I
Sbjct: 161 MGFIDQVEAIIDELPTDRMTMLFSAT-LPEDVE-------NLSHTYMKSPTHIEIKASGI 212

Query: 464 PINRIDEVIERLK----------VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             ++I+ ++  ++          +   E   +  I  + +E  +  FR +        + 
Sbjct: 213 TTDKIEHILLEVREEEKFSLLQDITTLENPDSCIIFCRTQENVDHVFRQLKRSGYPCDK- 271

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  IHG M   D+ +VM+ FK G  + L+AT V   GID+ + + +I  +      
Sbjct: 272 -------IHGGMIQEDRFAVMNDFKRGKFRYLVATDVAARGIDIENITHVINYDIPLEKE 324

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
           + +H+  GR GR       I    P
Sbjct: 325 SYVHRT-GRTGRAGNSGKAITFVTP 348


>gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 571

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 121/297 (40%), Gaps = 43/297 (14%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQ-AHRRKALERIAHGQAHI 378
           +A+I+ P   LA Q    +  Y ++T +   ++ G +   PQ A  R+ +E        I
Sbjct: 163 RALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRRGVE--------I 214

Query: 379 IIGTHALFQDSIQYY-----KLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLM 426
           +I T     D +Q       ++ ++++DE  R         +Q+ L L  K     +   
Sbjct: 215 LIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSA 274

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKA 485
           T +P  + L  T L +    ++    +    +  ++  +   D+    ++++   G K+ 
Sbjct: 275 TFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHSAVVQLLRDRGLKQV 334

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              C         N +    R     E      + IHG  S +++   +D+FK G  + L
Sbjct: 335 IVFC---------NSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIEAL 385

Query: 546 IATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +AT V   G+D+V+   +I      NAE +    +H++ GR GR       + L  P
Sbjct: 386 VATDVAARGLDIVELPAVINFDLPFNAEDY----VHRI-GRTGRAGATGDALSLCSP 437


>gi|155212870|gb|ABT17431.1| probable ATP-dependent helicase [Halorubrum sp. TP009]
          Length = 477

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 20/167 (11%)

Query: 302 VGSGKTLVALIAMAAAV-EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            G GKT V+L+  A  + +AGG+A+ +AP   L QQH +F ++        + + TG++ 
Sbjct: 42  TGLGKTTVSLLVTAERLHQAGGKALFLAPTKPLVQQHADFYREALSVPDDEIVVFTGDV- 100

Query: 361 QAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHR-FGVQQRLKL 414
           +   R AL       A I+I T     + L  + I    +  +  DE HR  G    + +
Sbjct: 101 KPDDRAAL----WDDARIVIATPQVVENDLVGNRISLRDVTHLTFDECHRATGDYAYVYI 156

Query: 415 TQK----ATAPHVLLMTATPIPRT----LVLTSLGDIDISKITEKPA 453
            ++    A  P V  M+A+P   T     V  +LG +++  +TE+ A
Sbjct: 157 AERYHADAADPLVTGMSASPGGDTEEIETVCENLGLVNVEVMTEEDA 203


>gi|312373567|gb|EFR21282.1| hypothetical protein AND_17289 [Anopheles darlingi]
          Length = 744

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 137/335 (40%), Gaps = 55/335 (16%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYT 345
           M+ I Q   GSGKTL  ++     ++         G  A+I+AP   LAQQ  +    + 
Sbjct: 158 MVGIAQ--TGSGKTLAYVVPSLVHIQHQESIRRGDGPIALILAPTRELAQQIQQVATDFG 215

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIV 400
                    + G  P+  + + LER     A I+I T     D ++       +   +++
Sbjct: 216 SRVSANNTCVFGGAPKGPQIRDLER----GAEIVIATPGRLIDFLERGITNLKRCTYLVL 271

Query: 401 DEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSLGD---IDISKIT 449
           DE  R     F  Q R  + Q      VL+ +AT  P   R L    L D   I+I  + 
Sbjct: 272 DEADRMLDMGFEPQIRKIMGQIRPDRQVLMWSAT-WPKEVRQLAEEFLADYIQINIGSLN 330

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----ESNFRSVVE 505
              A    ++  I+ +    E  ++L  +L+E      I  + + K     E+  R  V+
Sbjct: 331 LS-ANHNILQ--IVDVCEDYEKDQKLMKLLTE------ISAEPDTKTIIFVETKRR--VD 379

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII- 564
               +          IHG  S  +++ V+ +F+NG   +L+AT V   G+DV D   +I 
Sbjct: 380 DITRIVNRNGWRAVAIHGDKSQQERDYVLSAFRNGRQGILVATDVAARGLDVEDVKFVIN 439

Query: 565 ---IENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
                N+E +    +H++ GR GR     +   L+
Sbjct: 440 YDYPSNSEDY----VHRI-GRTGRSNNTGTAYTLF 469


>gi|289550739|ref|YP_003471643.1| Probable ATP-dependent DNA helicase RecQ [Staphylococcus
           lugdunensis HKU09-01]
 gi|315658235|ref|ZP_07911107.1| ATP-dependent helicase RecQ [Staphylococcus lugdunensis M23590]
 gi|289180271|gb|ADC87516.1| Probable ATP-dependent DNA helicase RecQ [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496564|gb|EFU84887.1| ATP-dependent helicase RecQ [Staphylococcus lugdunensis M23590]
          Length = 459

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 145/341 (42%), Gaps = 54/341 (15%)

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           K+I++ +   N  L IL    GSGK+L   +A     E     +I++P+  L       +
Sbjct: 20  KEIIKSVLDSNHTLGILP--TGSGKSLCYQMA---TYELQQSTLIISPLISLMDDQVAQL 74

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI----- 396
           K   + +   V  I   M    +   ++R+A  +  I +    + Q   Q +KLI     
Sbjct: 75  KMSGEQS---VAYIHSGMDDNEKNWNMKRLAKSR-FIFLSPEFILQP--QNFKLISTIDF 128

Query: 397 -LVIVDEQH---RFGVQQR------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            L+++DE H    +G   R       K+T       +L +TAT  P         + D++
Sbjct: 129 GLIVLDEAHCISEWGYDFRPHYALISKITNYYKNATILALTATAPPHL-------EQDLN 181

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-----SNFR 501
           ++         IKT    +NR +   + +    ++ +K  W+   IE+        S+ +
Sbjct: 182 QLLN--VSFHVIKT---HMNRPNISFQHINFR-NDQEKMNWLMHYIEQSGPTIIYVSSKK 235

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             VE   ++++H   +  I HG +S  ++++V   F N    +++AT+   +G++  D  
Sbjct: 236 MCVELAKTIYKHGYLT-GIYHGDLSYQERQTVQQQFINNDIPVIVATSAFGMGVNKKDIR 294

Query: 562 IIIIENAEHFGL----AQLHQLRGRVGRGEEISSCILLYHP 598
            +I     HF L    +   Q  GR GR ++ S  I L+ P
Sbjct: 295 TVI-----HFHLSTSPSSYLQEIGRAGRDQQPSQAISLFQP 330


>gi|212540616|ref|XP_002150463.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210067762|gb|EEA21854.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 808

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 126/305 (41%), Gaps = 51/305 (16%)

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHG---QA 376
           G  A+I+AP   LAQQ     KK+++     +V I+ G+        +LE  A+     A
Sbjct: 446 GPYAIILAPTRELAQQIEIEAKKFSKPLNFNVVSIVGGH--------SLEEQAYSLRDGA 497

Query: 377 HIIIGTHALFQDSIQYYKLIL-----VIVDEQHR---FGVQQRLKL-------------T 415
            III T     D ++   L+L     VI+DE  R    G ++ +               T
Sbjct: 498 EIIIATPGRLVDCLERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDT 557

Query: 416 QKATAPHVLLMTATPIPR----TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           ++A     +        R    T++ T+     + +I  K   R  I T+      +D V
Sbjct: 558 EEAEDAQAMSQHVGGRDRRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNVGQAVDTV 617

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----------SIAII 521
            +R++ V  E K+   +   +       F+  +  F ++  +  +          S   +
Sbjct: 618 EQRVEFVAGEDKRKKRLADIL---MSGQFQPPIIVFVNIKRNCDAVAKDIKQMGFSSVTL 674

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG  +   +E+ + S +NG+  +L+AT +   GIDV D S+++  N      +  H++ G
Sbjct: 675 HGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRI-G 733

Query: 582 RVGRG 586
           R GR 
Sbjct: 734 RTGRA 738


>gi|146197776|dbj|BAF57607.1| DEAD box RNA helicase Me31B [Dugesia japonica]
          Length = 503

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 500 FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F +  +R   L +  T    S   IH +M+ + +  V   F+NG C+ L+ T +   GID
Sbjct: 292 FCNTAQRVELLAKKITDLGYSCYYIHAKMNQVYRNRVFHEFRNGNCRNLVCTDLFTRGID 351

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +   +++I  +   +    LH++ GR GR
Sbjct: 352 IPSVNVVINFDFPKYAETYLHRI-GRSGR 379


>gi|119112278|ref|XP_311683.3| AGAP003397-PA [Anopheles gambiae str. PEST]
 gi|116129870|gb|EAA07398.3| AGAP003397-PA [Anopheles gambiae str. PEST]
          Length = 425

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 141/348 (40%), Gaps = 66/348 (18%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P+K QE+A+  +L D  Q      I Q   G+GKT   ++AM + V+      Q + ++
Sbjct: 60  APSKIQETALPTLLADPPQN----MIAQSQSGTGKTAAFVLAMLSRVDPRKPYPQVICLS 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  +  + I       +  A R + L +      HIIIGT     D
Sbjct: 116 PTYELAIQTGEVAAKMAKFCKEI------KLRFAVRGEELPKGKKITDHIIIGTPGKLMD 169

Query: 389 ------SIQYYKLILVIVDEQHRF----GVQQRLKLTQK--ATAPHVLLMTATPIPRTLV 436
                 +    K+ + ++DE        G Q +     K  +++  ++  +AT     + 
Sbjct: 170 WGIKFRAFDLRKISVFVLDEADVMIATQGHQDQCIRIHKQLSSSCQMMFFSATYEKEVME 229

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                      I   P        +II + R  E ++ +K       + Y  C   +EK 
Sbjct: 230 FAEY-------IVPNP--------IIIRLAREQESLDNIK-------QYYVKCKNQDEKY 267

Query: 497 E--SNFRSVVERFNSL---HEHFTS------------SIAIIHGRMSDIDKESVMDSFKN 539
           +  SN   V+    ++   H   T+            S+A++ G ++   + +V+D F+ 
Sbjct: 268 QAISNIYGVITVGQAIIFCHTRKTAGWLSGKMTQDGHSVAVLSGELTVEQRLAVLDRFRA 327

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIEN--AEHFGLAQLHQLRGRVGR 585
           G  K+LI T V+  GIDV   +I++  +   +  G A       R+GR
Sbjct: 328 GLEKVLITTNVLSRGIDVEQVTIVVNFDLPMDQSGRADCETYLHRIGR 375


>gi|327438469|dbj|BAK14834.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 517

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 165/406 (40%), Gaps = 47/406 (11%)

Query: 299 QGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           Q   G+GKT    I +   ++      QA+++AP   LA Q  E + K   + ++ +  +
Sbjct: 45  QAQTGTGKTAAFGIPLIEKIDPKNPNIQALVIAPTRELAIQVSEELYKLGYDKRVKLLSV 104

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFG 407
            G      + +AL+     +  II+GT    QD I        +   L+L   DE    G
Sbjct: 105 YGGQEIGRQIRALK----NKPQIIVGTPGRIQDHINRRTLRLDEVQTLVLDEADEMLNMG 160

Query: 408 VQQRLK--LTQKATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
               +   L    +    LL +AT  P  R +  T + D +I KI  K    + I+   +
Sbjct: 161 FIDDINAILENVPSDRQTLLFSATMPPAIRKIAETFMKDPEIVKIKAKELTMENIEQFFV 220

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
                 E  + L  +L   K    I     +++       +     L E        IHG
Sbjct: 221 KATE-REKFDALSRLLDSQKPELAIIFGRTKRRVDELSQALGLRGFLAEG-------IHG 272

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLAQLHQL 579
            +S   + SV+  FK G   +LIAT V   G+D+   + +    I ++ E +    +H++
Sbjct: 273 DLSQAKRISVLRQFKEGKIDILIATDVAARGLDISGVTHVYNFDIPQDPESY----VHRI 328

Query: 580 RGRVGRGEEISSCILLYHPP-------LSKNSYTRLSVLK--NTEDGFLIAEEDLKQRKE 630
            GR GR  +    +    P        + + +  R++ L+  ++E+  +  +ED  Q   
Sbjct: 329 -GRTGRAGKSGVAVTFVTPREMGYLRIVEETTKKRMTPLRPPSSEEALVGLQEDAMQSLV 387

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            E++     G  + L A+   ++  L++     K I T++PD T V
Sbjct: 388 -ELVQNNDLGTYRELAAKLLENNDALDLVAAALKSI-TKEPDATPV 431


>gi|314933730|ref|ZP_07841095.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
 gi|313653880|gb|EFS17637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
          Length = 447

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 160/376 (42%), Gaps = 68/376 (18%)

Query: 270 PFSPTKSQESAIKDILQDMS-------QKNRMLRILQG-------DVGSGKT---LVALI 312
           PF      ES IK + QD++       Q   + RIL+G         G+GKT   L+ LI
Sbjct: 5   PFEHFNLDESLIKAV-QDLNFEKPTEIQNKIIPRILKGTNLIGQSQTGTGKTHSFLLPLI 63

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYE---FIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            M        QA+++AP   LAQQ ++    + K+ Q  ++ V++  G       ++   
Sbjct: 64  QMIDVDLQEPQAIVVAPTRELAQQLFQAASHLCKFKQ--EVNVKLFIGGTDIEKDKQRCN 121

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQH---RFGVQQRL-----KLTQ 416
           R    Q  +IIGT     D  Q   L       +IVDE       G+ + +     +L  
Sbjct: 122 R----QPQLIIGTPTRINDLAQGGHLHAHLASNLIVDEADLMIDLGLIEDVDYIAARLND 177

Query: 417 KATAPHVLLMTATPIPRTL---VLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDE 470
           +A   H+ + +AT IP++L   +   L   +  ++  K   +K I+  +IP     ++D+
Sbjct: 178 EA---HIAVFSAT-IPKSLQPFLNKYLSQPEFVEVDHKSHNKKNIEFYLIPTKGTAKVDK 233

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            +  + ++       Y        ++ +N     E  +SL++     + +IHG ++  ++
Sbjct: 234 TLNLIDIL-----NPYLSIIFCNSRENAN-----ELADSLNKEGIK-VGMIHGGLTPRER 282

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII---IENAEHFGLAQLHQLRGRVGRGE 587
           +  M   +N   + +IA+ +   GID+   S +I   + N   F   ++    GR GRG 
Sbjct: 283 KQQMKRIRNLDFQYVIASDLASRGIDIEGVSHVINFDVPNDIDFFTHRV----GRTGRGN 338

Query: 588 EISSCILLYHPPLSKN 603
                I LY P    N
Sbjct: 339 YKGVAITLYSPDEEHN 354


>gi|283049400|gb|ADB07168.1| DEAD-box RNA helicase-like protein [Prunus persica]
 gi|283049402|gb|ADB07169.1| DEAD-box RNA helicase-like protein [Prunus persica]
          Length = 413

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 122/312 (39%), Gaps = 43/312 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT      +   ++      QA+++AP   LAQQ  + ++       + V 
Sbjct: 81  IQQAQSGTGKTATFCSGILQQLDYAVVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-------YYKL-ILVIVDEQHR 405
              G        +  +RI     H+++GT     D ++       Y K+ +L   DE   
Sbjct: 141 ACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 196

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G + ++        +   V + +AT  P  L +T        K   KP        V I
Sbjct: 197 RGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR-------KFMNKP--------VRI 241

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEH 513
            + R +  +E +K       K  W    + +  E+          N R  V+        
Sbjct: 242 LVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS 301

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV   S++I  +      
Sbjct: 302 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 361

Query: 574 AQLHQLRGRVGR 585
             LH++ GR GR
Sbjct: 362 NYLHRI-GRSGR 372


>gi|242021756|ref|XP_002431309.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212516577|gb|EEB18571.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 675

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG  S  D++ V++ F+ G   +L+AT V   G+DV D   +I  +  +     +H++ 
Sbjct: 399 IHGDKSQSDRDYVLNQFRCGRVNILVATDVAARGLDVDDVKFVINFDYPNNSEDYVHRI- 457

Query: 581 GRVGRGEEISSCILLYHP 598
           GR GR ++  +    + P
Sbjct: 458 GRTGRHDKTGTAYTFFTP 475


>gi|168491381|ref|ZP_02715524.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae CDC0288-04]
 gi|183574187|gb|EDT94715.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Streptococcus pneumoniae CDC0288-04]
          Length = 798

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++       V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGDK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q     
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEAAYKQ--DSN 396

Query: 416 QKATAPHVLLMTATPIPRTLVLTS 439
            +  A  V ++ A     TLVL S
Sbjct: 397 PRYHAREVAILRAQYNQATLVLGS 420


>gi|157736313|ref|YP_001488996.1| DEAD-box ATP dependent DNA helicase [Arcobacter butzleri RM4018]
 gi|157698167|gb|ABV66327.1| ATP-dependent RNA helicase, DEAD box family [Arcobacter butzleri
           RM4018]
          Length = 516

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 141/350 (40%), Gaps = 55/350 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAPI 330
           P+  QE AI  IL       R + + Q   G+GKT    + +   ++A  G +AV++ P 
Sbjct: 24  PSPIQEQAIPYILD-----GRDI-VGQAHTGTGKTAAFGLPILNKIKAKSGVEAVVIVPT 77

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  + + ++ +   I    + G    A + K +E      + +I+ T   F D +
Sbjct: 78  RELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIE-----NSSVIVATPGRFLDLL 132

Query: 391 QYYKLIL----VIVDEQHR---------------FGVQQRLKLTQKATAPHVLLMTATPI 431
           +  K+ +    VI+DE                  F  + R  L   AT P  +   A  I
Sbjct: 133 RGDKISIKPKFVILDEADEMLDMGFLDDIKEIFTFLPENRQTLLFSATMPTAIKNLAKTI 192

Query: 432 ---PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
              P  + LT   D+  SKIT+           ++     D+ + RL       KK+   
Sbjct: 193 LKEPEFVTLTK-SDVTNSKITQT--------FYVVDEKERDDALIRL-FDFKNPKKSIIF 242

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C     KK+      V+R ++           +HG M    +E  + +FK+   ++LIAT
Sbjct: 243 C---RTKKD------VDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILIAT 293

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+DV D + +   +      + +H++ GR GR  +    I +  P
Sbjct: 294 DVAARGLDVNDVTHVFNYHLPFDSESYVHRI-GRTGRAGKEGMAISIVTP 342


>gi|121486020|gb|ABM54889.1| ATP-independent RNA helicase [Escherichia coli]
          Length = 437

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 68/332 (20%)

Query: 298 LQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQ---HYEFIKKYTQNTQII 351
           +Q   GSGKT    + +   ++A     QA+++ P   LA Q       + ++  NT+I+
Sbjct: 25  VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKIL 84

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHR- 405
              + G  P   +R +L+       HII+ T     D +Q   + L     +++DE  R 
Sbjct: 85  T--LCGGQPFGMQRDSLQH----APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM 138

Query: 406 --------------FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
                         F    R  L   AT P  +   +  + R  +   +   D     E+
Sbjct: 139 LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ 198

Query: 452 ------PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
                   G+ P+   ++ +++    +    V  +  K    +C  + E  +S       
Sbjct: 199 QFYETSSKGKIPLLRRLLSLHQPSSCV----VFCNTKKDCQAVCDALNEVGQSALS---- 250

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                          +HG +   D++  +  F NG+ ++L+AT V   G+D+   S+ ++
Sbjct: 251 ---------------LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDI--KSLELV 293

Query: 566 ENAEHFGLAQLHQLR-GRVGR----GEEISSC 592
            N E     ++H  R GR  R    G  IS C
Sbjct: 294 VNFELAWDPEVHVHRIGRTARAGNSGLAISFC 325


>gi|71021341|ref|XP_760901.1| hypothetical protein UM04754.1 [Ustilago maydis 521]
 gi|46100997|gb|EAK86230.1| hypothetical protein UM04754.1 [Ustilago maydis 521]
          Length = 1448

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 134/307 (43%), Gaps = 31/307 (10%)

Query: 302  VGSGKTLVALIAM-----AAAVEAGGQAVIMAPIGILAQQHYEFIKKYT--QNTQIIVEI 354
             GSGKTL  L+ +         +   +AVI++P   LAQQ Y+ +++ +  QN +I V  
Sbjct: 1040 TGSGKTLAFLLPLIHHLRTPCRKEHFRAVIVSPTRELAQQIYDQLRRLSEGQNFRICVLT 1099

Query: 355  ITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHRF--- 406
             T +        + +     +  ++I T     HA+ ++ ++   +  +++DE  R    
Sbjct: 1100 STSDATAVANSSSADASKRKKYDVLITTPLRLVHAIEKEQVELSNVRHLVLDEADRLLED 1159

Query: 407  -GVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDISKI--TEKPAGRKPIKTV 461
              +QQ   +    + P +   L +AT       +     ID  ++    K +  + I+  
Sbjct: 1160 GFLQQTDSILAACSHPQLRKALFSATLPAGVEEMAKTFMIDECRVIVGTKDSATETIQQE 1219

Query: 462  IIPINRIDEVIERLKVVLSEG--KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            +  +   D  +  L+ ++ +G  K    +  Q  E+ +  F  +V  ++ LH      + 
Sbjct: 1220 LQFVGSEDGKLHALRSLILQGGLKPPVLLFVQSIERAKDLFHELV--YDGLH------VD 1271

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +IH     + +E V+ +FK G   +LI T ++  GID     ++I  +      + +H++
Sbjct: 1272 VIHSERPKLQRERVISAFKRGDIWVLICTELMARGIDFKGVQLVINYDFPQSVQSYIHRI 1331

Query: 580  RGRVGRG 586
             GR GR 
Sbjct: 1332 -GRTGRA 1337


>gi|330940397|gb|EGH43498.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 644

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 118/276 (42%), Gaps = 35/276 (12%)

Query: 386 FQDSIQYYKLILVIVDEQH---RFGVQQR---LKL---TQKATAPHVLLMTATPIPRTLV 436
           F++ I    + L++VDE H    +G   R   LKL    ++   P  LL+TAT  P+ ++
Sbjct: 119 FRNFIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQREFNIPQTLLLTATATPQVII 178

Query: 437 -LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +     I    +      R  +   + P++  D+   RL   L+E +    I     +K
Sbjct: 179 DMQDKFAIAPEDVITTGFYRANLHLWVKPVSGRDKR-RRLVEWLNERRGQPTIVYVTLQK 237

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              +  + +E+ N L        +  H  + +  +ES+   F  G    ++AT    +GI
Sbjct: 238 TAEHIAAHLEQ-NGL------PASAYHAGLPNDQRESIQKQFMGGHLNCIVATIAFGMGI 290

Query: 556 DVVDASIIIIENAEHFGLAQ----LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           D  D     I N  HF L +      Q  GR GR    S C++L     +++S   L+VL
Sbjct: 291 DKSD-----IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVL----ANRDS---LNVL 338

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           +N   G     E + +  E ++LG +  G  +FL+ 
Sbjct: 339 ENFVYGDTPEREGIARVLE-DLLGARHDGQWEFLLG 373


>gi|329123747|ref|ZP_08252307.1| ATP-dependent RNA helicase DeaD [Haemophilus aegyptius ATCC 11116]
 gi|327469946|gb|EGF15411.1| ATP-dependent RNA helicase DeaD [Haemophilus aegyptius ATCC 11116]
          Length = 613

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 143/356 (40%), Gaps = 61/356 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           +P+  Q+S I  +L      N +L + Q   GSGKT    + L+A     E   Q ++MA
Sbjct: 27  TPSPIQQSCIPHLLS----GNDVLGMAQ--TGSGKTAAFALPLLAQIDPSEKHPQMLVMA 80

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q     E   KY Q T+I+   + G      + +AL++     A +++GT   
Sbjct: 81  PTRELAIQVADACELFVKYAQGTRIVT--LYGGQRYDIQLRALKQ----GAQVVVGTPGR 134

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP---HVLLMTAT-PIP- 432
             D I+   L        +L   DE  R G    ++ T  A  P      L +AT P P 
Sbjct: 135 ILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVE-TVMAELPENHQTALFSATMPEPI 193

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL--------KVVLSEG 482
           R +    + D    KI         I      ++  R +E + R          ++ +  
Sbjct: 194 RRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIFART 253

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           K       ++ EK  + FRS                A ++G M+   +E  +D  +NG+ 
Sbjct: 254 KTGTLDITELLEK--NGFRS----------------AALNGDMTQQLREQTLDRLRNGSL 295

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +++AT V   GID+   S+++  +      + +H++ GR GR       +L   P
Sbjct: 296 DIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEP 350


>gi|322387436|ref|ZP_08061046.1| Snf2 family protein [Streptococcus infantis ATCC 700779]
 gi|321141965|gb|EFX37460.1| Snf2 family protein [Streptococcus infantis ATCC 700779]
          Length = 1032

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 14/144 (9%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           IL  D+G GKTL A+  +++ ++   + +I+AP G++     EF KK+  N  + V ++ 
Sbjct: 605 ILADDMGLGKTLQAIAFLSSQLQENSRVLILAPSGLIYNWADEF-KKFAPN--LDVAVVH 661

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALF-QDSIQYYKL---ILVIVDEQHRFGVQQRL 412
           G  P  +R    E I   +  + + ++A F QDS  Y  L    L + + Q     Q ++
Sbjct: 662 GLKP--YR----ETILAEKHQVYVTSYATFRQDSEIYRNLSFDFLFLDEAQVMKNAQTKI 715

Query: 413 -KLTQKATAPHVLLMTATPIPRTL 435
            K+ +K   P V  ++ TPI   L
Sbjct: 716 AKILRKFVVPSVFALSGTPIENNL 739


>gi|282851434|ref|ZP_06260799.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1]
 gi|282557402|gb|EFB62999.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1]
          Length = 422

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 149/363 (41%), Gaps = 52/363 (14%)

Query: 256 NVEGKIAQKILRNIPF--SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           NVE     KIL  + +  + T+ QE   ++++   S K R   ++    G+GKT +    
Sbjct: 69  NVENGNYPKILTPLSWRETLTEQQELISRELVN--SFKERRNHLIHAVTGAGKTEMLFKV 126

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A++ G +  I  P   +  + +   +   +N +I          + H R+  E    
Sbjct: 127 VEEALKGGFRIAIATPRIDVVDELFPRFQAAFENVKI---------GKYHGREHHE--VR 175

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV------LLMT 427
            +  +I  TH L +    Y    L+++DE   F   +  K+   A    V        +T
Sbjct: 176 DEQFVICTTHQLLK---FYQAFDLIVIDEVDSFPFYEN-KMLHFAAENAVKKVGCTFFLT 231

Query: 428 ATPIPRTLVLTSLGDIDISKITEK--------PAGRKPIKTVIIPINRID-EVIERLKVV 478
           ATP  + L       I+ S +  +        P  +   K+ I    ++   +I+++K +
Sbjct: 232 ATPDSKLLRQAKNKTINYSLLKRRFHQGLLPVPKEKYFFKSYISNKGKVHPTLIKQIKKI 291

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI----AIIHGRMSDIDKESVM 534
           L   K      P+I+E              S +E + SSI     I+     D D+++ +
Sbjct: 292 LDMKKLLLIFVPRIKEL-------------STYEKYLSSIFKTSKIVSVYAGDKDRQAKV 338

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH-FGLAQLHQLRGRVGRGEEISSCI 593
            SF+     +L+ TT++E G+      +I+I   +  +    L Q+ GRVGR  +    +
Sbjct: 339 ASFRRRETDILLTTTILERGVTFKHVQVIVIAADDPIYNTPSLVQIAGRVGRSADDRDGL 398

Query: 594 LLY 596
           +L+
Sbjct: 399 VLF 401


>gi|282876512|ref|ZP_06285378.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
           epidermidis SK135]
 gi|281294764|gb|EFA87292.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
           epidermidis SK135]
 gi|329735713|gb|EGG71996.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU028]
          Length = 509

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 142/340 (41%), Gaps = 53/340 (15%)

Query: 290 QKNRMLRILQGD-------VGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEF 340
           QK+ +   L+GD        G+GKT    I +   V  + G Q++I+AP   LA Q  E 
Sbjct: 29  QKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQQGVQSLILAPTRELAMQVAEQ 88

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-------- 392
           ++++++  ++ V  + G MP   + KAL+R       I++GT     D +          
Sbjct: 89  LREFSKGQKVQVVTVFGGMPIERQIKALKR----GPQIVVGTPGRVIDHLNRRTLKTQGI 144

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQK---ATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + LIL   DE    G    ++       A     +L +AT +P+ +         + +  
Sbjct: 145 HTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSAT-MPKAIQEL------VQQFM 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           + P   K IKT+   ++  D  I+    ++ E +K +       +  +     V  R   
Sbjct: 198 KAP---KIIKTMNNEMS--DPQIDEYYTIVKELEK-FDTFTNFLDVHQPELAIVFGRTKR 251

Query: 510 LHEHFTSSI-------AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             +  TS++         +HG ++   +  V+  FKN    +L+AT V   G+D+   S 
Sbjct: 252 RVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSH 311

Query: 563 I----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +    I ++ E +     H++ GR GR  +    +   +P
Sbjct: 312 VYNFDIPQDTESY----THRI-GRTGRAGKEGIAVTFVNP 346


>gi|254578784|ref|XP_002495378.1| ZYRO0B09856p [Zygosaccharomyces rouxii]
 gi|238938268|emb|CAR26445.1| ZYRO0B09856p [Zygosaccharomyces rouxii]
          Length = 540

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 128/326 (39%), Gaps = 51/326 (15%)

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKTL   +     + A        G   +++AP   LA Q  +   K+ ++++I   
Sbjct: 156 TGSGKTLSYCLPAIVHINAQPLLAPGDGPVVLVLAPTRELAVQIQKECSKFGRSSRIRNT 215

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF-- 406
            + G +P+  + + L R     A I+I T     D ++  K  L     +++DE  R   
Sbjct: 216 CVYGGVPRGQQIRDLAR----GAEIVIATPGRLIDMLEINKTNLKRVTYLVLDEADRMLD 271

Query: 407 -GVQ------------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            G +             R  L   AT P  +   A       +   +G +++S       
Sbjct: 272 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLARDYLTDPIQVQIGSLELS------- 324

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
               IK V+  I+   E  +RL   L        I  + ++ K   F S     + + ++
Sbjct: 325 ASHTIKQVVEVISEF-EKRDRLSKHLE-------IASEDQDSKVLVFASTKRTCDDITQY 376

Query: 514 FTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 S   IHG     +++ V++ FKNG   +++AT V   GIDV   + +I  +   
Sbjct: 377 LRQDGWSALAIHGDKDQRERDWVLEEFKNGRSPIMVATDVAARGIDVKGINYVINYDMPG 436

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY 596
                +H++ GR GR     + I  +
Sbjct: 437 NIEDYVHRI-GRTGRAGAKGTAISFF 461


>gi|291326441|ref|ZP_06124507.2| ATP-dependent RNA helicase RhlE [Providencia rettgeri DSM 1131]
 gi|291314194|gb|EFE54647.1| ATP-dependent RNA helicase RhlE [Providencia rettgeri DSM 1131]
          Length = 442

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 139/348 (39%), Gaps = 46/348 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVG--SGKTLVALIAMAAAVEAGG-----QA 324
           SPT  Q+ AI  +L      N +L   Q   G  +G TL  L  +     +G      +A
Sbjct: 24  SPTPIQQQAIPAVLAG----NDLLASAQTGTGKTAGFTLPILQKLITTPRSGKDRKPIRA 79

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQAHRRKALERIAHGQAHIIIG 381
           +I+ P   LA Q  E +K+Y+++ +I   ++ G +   PQ  + +       G   I+I 
Sbjct: 80  LILTPTRELAAQVAENVKEYSRHLRIRSFVVFGGVSINPQMMKLR-------GGVDILIA 132

Query: 382 THALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR--- 433
           T         Q+++   ++ + ++DE  R      +         H +      +P+   
Sbjct: 133 TPGRLLDLEHQNAVDLSQVEVFVLDEADRMLDMGFI---------HDIRRVINKLPKKRQ 183

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    +I ++  K     P+   + P N   E + +   ++ + +KA  +   I 
Sbjct: 184 NLLFSATFSDEIKQLANKLLN-NPVTIEVAPRNSASEQVAQYVHLVDKKRKAELLSFMIG 242

Query: 494 EKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +       F       N L EH        A IHG  S   +   +  FK+G  ++L+A
Sbjct: 243 RENWQQVLVFTRTKHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDIRVLVA 302

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           T +   G+D+     ++     +     +H++ GR GR E     + L
Sbjct: 303 TDIAARGLDIEQLPYVVNFELPNVAEDYVHRI-GRTGRAEATGMAVSL 349


>gi|139438943|ref|ZP_01772403.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
           25986]
 gi|133775654|gb|EBA39474.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
           25986]
          Length = 749

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A IHG  S   +E  + +F++GT  +L+AT V+  GID+ D   ++  +        +H+
Sbjct: 336 AAIHGNRSQAQRERALSAFRDGTVDVLVATDVLARGIDISDVRYVVNFDVPAEPTDYIHR 395

Query: 579 LRGRVGRGEEISSCILL 595
           + GR GR  E+   I  
Sbjct: 396 I-GRTGRAGELGWAITF 411


>gi|52080174|ref|YP_078965.1| primosome assembly protein PriA [Bacillus licheniformis ATCC 14580]
 gi|52785551|ref|YP_091380.1| primosome assembly protein PriA [Bacillus licheniformis ATCC 14580]
 gi|52003385|gb|AAU23327.1| primosomal replication factor Y (primosomal protein N') [Bacillus
           licheniformis ATCC 14580]
 gi|52348053|gb|AAU40687.1| PriA [Bacillus licheniformis ATCC 14580]
          Length = 805

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P   T+ Q  A + I   + +K   + +L G  GSGKT V L ++   +EAG +A+++ P
Sbjct: 265 PLPLTEEQAQAYEAIADAIEEKRHDVFLLHGVTGSGKTEVYLQSIEKVLEAGKEAIVLVP 324

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 325 EISLTPQMVNRFKGRFGSQ----VAVLHSGLSTGEKYDEWRKIHRKEVRLVVGARSAIF- 379

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 380 --APFENLGMIIIDEEHETSYKQ 400


>gi|159110489|ref|XP_001705502.1| ATP-dependent RNA helicase-like protein [Giardia lamblia ATCC
           50803]
 gi|157433587|gb|EDO77828.1| ATP-dependent RNA helicase-like protein [Giardia lamblia ATCC
           50803]
          Length = 656

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +NF+S  +R     +     +A+IHG M+  ++E+ +  FK G   +LI T V + G+D+
Sbjct: 476 TNFKSEADRIFRYFDDMRYRVAVIHGDMTQKERENNLKYFKAGRTNILIGTDVAQRGLDI 535

Query: 558 VDASIIIIENAEHFGLAQLHQLR-GRVGRG 586
            +  +++  N +  G    +  R GR GR 
Sbjct: 536 PNVRLVL--NYDLPGNVDDYTHRIGRTGRA 563


>gi|289434525|ref|YP_003464397.1| DbpA-type ATP-dependent RNA helicase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170769|emb|CBH27309.1| DbpA-type ATP-dependent RNA helicase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 474

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 134/343 (39%), Gaps = 48/343 (13%)

Query: 297 ILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + +   GSGKT    I +A  V   E   QA+I+ P   L  Q         +  +I   
Sbjct: 44  VAKSQTGSGKTAAFAIPIAEQVIWEENKPQALIIVPTRELGVQVKTECTNIGRFKRIKAA 103

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHR 405
            I G  P A ++  L +    + HI++GT     D I+           L+L  VDE   
Sbjct: 104 AIYGQSPFAKQKLELSQ----KNHIVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLS 159

Query: 406 FG-VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            G + Q   + Q        L  +  +P       + D+ I +  E P   +       P
Sbjct: 160 MGFIDQVEDILQFLPKKRQNLFFSATMP-----DEMQDL-IKRYQEDPVVIEMAAEKTNP 213

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--FRSVVERFNSLHEHFTSSIAIIH 522
           I  I+        + +E K+       I E  +S   F +   + + L +    + A IH
Sbjct: 214 ITHIE--------MQTENKEKTLQDVLITENPDSAIIFCNTKNQVDELSDLLQVNAAKIH 265

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G +   ++   MD FK+G  + LIAT V   GIDV + +++I  +        +H++ GR
Sbjct: 266 GGLRQEERFRAMDDFKSGKSRFLIATDVAGRGIDVENVTLVINYDLPVEKENYVHRI-GR 324

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            GR               + NS   +S +K  E+  L   ED+
Sbjct: 325 TGR---------------AGNSGKAISFVKTNENPLLRDIEDM 352


>gi|288958478|ref|YP_003448819.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
 gi|288910786|dbj|BAI72275.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
          Length = 521

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 147/358 (41%), Gaps = 43/358 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT------LVALIAMAAAVEAGGQAVI 326
           PT  QE AI  +LQ    +  +L   Q   G+GKT      +++++A   A     +++I
Sbjct: 24  PTPIQEQAIPCVLQ----RRDVLGCAQ--TGTGKTASFTLPMISILASGRARARMPRSLI 77

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  + Y +  ++ + ++ G      + K L+R       ++I T    
Sbjct: 78  LEPTRELAAQVAESFEVYGKYHKLSMALLIGGETFTEQVKKLDR----GVDVLIATPGRL 133

Query: 387 QDSIQYYKLIL-----VIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIPRTLV 436
            D  +   ++L      ++DE  R    G    ++  +++       L  +AT  P    
Sbjct: 134 IDLFERGNIMLNDIKVFVIDEADRMLDMGFIPDIERIVSKLPKNRQTLFFSATMPPEIRR 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER--LKVVL--SEGKKAYWICPQI 492
           L      D  +IT  P    P +TV   +  + E+ +R  L+ +L   + K A+  C   
Sbjct: 194 LADAFLTDPMEITVAPPA-SPAETVTQALALVHEMDKRRALRHLLQTEDVKNAFIFC--- 249

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  R +     SL  H   ++  +HG M    +   ++ FK G   LL+ + V  
Sbjct: 250 -----NRKRDIAVLQKSLERH-GFNVGALHGDMVQSKRTETLERFKQGEITLLVCSDVAA 303

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK--NSYTRL 608
            GIDV   S +   +        +H++ GR GR  +     +L  P  +K   + TRL
Sbjct: 304 RGIDVQGLSHVFNFDVPLTPDDYVHRI-GRTGRAGKQGRAFMLATPDDTKLVGAITRL 360


>gi|261884558|ref|ZP_06008597.1| cpp14 [Campylobacter fetus subsp. venerealis str. Azul-94]
          Length = 305

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 11/107 (10%)

Query: 290 QKNRMLRILQGD-------VGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEF 340
           QKN + R +Q +       VG+GKTLVA+ ++      G   + +I+ P  +  Q + EF
Sbjct: 137 QKNAIYRAIQENSIIFDHQVGAGKTLVAICSVMEQKRMGLLNKPLIVVPNHLARQWNDEF 196

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
              YT N  I+V     ++ + +R K   +IA      II TH+ F+
Sbjct: 197 YHAYT-NANILV-ATNDDLKKDNREKFFSKIATNNFDAIIMTHSQFK 241


>gi|256045131|ref|ZP_05448032.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1]
 gi|265991567|ref|ZP_06104124.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1]
 gi|263002351|gb|EEZ14926.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1]
          Length = 393

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E GIPI +E            F P+  Q +AI+D+++ +  ++R  ++L G  GSGKT
Sbjct: 146 KSEGGIPIRME----------TSFEPSGDQPTAIRDLVEGLENQDRT-QVLLGVTGSGKT 194

Query: 308 LVALIAMAAAVEAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQI 350
                 MA  +E   + A+I+AP   LA Q Y   K +  N  +
Sbjct: 195 FT----MAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAV 234


>gi|253743154|gb|EES99653.1| ATP-dependent RNA helicase-like protein [Giardia intestinalis ATCC
           50581]
          Length = 657

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +NF+S  +R     +     +A+IHG M+  ++E+ +  FK G   +LI T V + G+D+
Sbjct: 476 TNFKSEADRIFRYFDDMRYRVAVIHGDMTQKERENNLKYFKAGRTNILIGTDVAQRGLDI 535

Query: 558 VDASIIIIENAEHFGLAQLHQLR-GRVGRG 586
            +  +++  N +  G    +  R GR GR 
Sbjct: 536 PNVRLVL--NYDLPGNVDDYTHRIGRTGRA 563


>gi|218188023|gb|EEC70450.1| hypothetical protein OsI_01481 [Oryza sativa Indica Group]
          Length = 512

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 119/283 (42%), Gaps = 40/283 (14%)

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LAQQ  + + +      I    + G   +  +  AL+        I+IGT  
Sbjct: 171 LVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQISALKS----GVDIVIGTPG 226

Query: 385 LFQDSIQY-----YKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIPRT 434
             +D I+        +  V++DE  R     F  + R  L+Q A+   +++ +AT  P  
Sbjct: 227 RMKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASVRQMVMFSATWPPA- 285

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVI----IPINRIDEVIERLKVVLSEGKKAYWICP 490
                     + ++ ++     PIK VI    +  N   +V++ ++V+    + +  +  
Sbjct: 286 ----------VHQLAQEFMDPNPIKVVIGSEDLAANH--DVMQIVEVLDDRSRDSRLVAL 333

Query: 491 QIEEKKESNFRSVV--------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  K    R +V         R  ++ +    S   +HG  +  D+   +  FK G+C
Sbjct: 334 LDKYHKAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGSC 393

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            L+IAT V   G+D+ D  ++I  +        +H++ GR GR
Sbjct: 394 PLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRI-GRTGR 435


>gi|114799571|ref|YP_759282.1| DEAD-box ATP dependent DNA helicase [Hyphomonas neptunium ATCC
           15444]
 gi|114739745|gb|ABI77870.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Hyphomonas
           neptunium ATCC 15444]
          Length = 708

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 125/335 (37%), Gaps = 67/335 (20%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQ----------AVIMAPIGILAQQHYEFIKKYTQNTQII 351
            GSGKT+   +A+A  +  G             +I+AP   LA Q    ++    NT   
Sbjct: 46  TGSGKTVAFGLAIANELLGGEDTFLIRAATPLGLIIAPTRELALQVARELRWLYANTNAE 105

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQ 403
           +    G M     R+ALER     AHI++GT     D I            ++L   DE 
Sbjct: 106 IATCVGGMDMRDERRALER----GAHIVVGTPGRLVDHINRGSFDTSAIRAVVLDEADEM 161

Query: 404 HRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLV------------------LTSLGDI 443
              G ++ L+L  + T      L+ +AT +P+ +                    T+  DI
Sbjct: 162 LDLGFREELELILEDTPKERRTLMFSAT-VPKGIAALATRYQKNGLRITTDSDTTAHADI 220

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
               +            V+ P +  + ++    V  S+ + A   C         + R+ 
Sbjct: 221 AYEAL------------VVAPGDEENAIVN--IVRHSDTESAIVFC---------STRAS 257

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V    +   +   S+  + G  S  ++ + + S ++G  ++ IAT V   G+D+    ++
Sbjct: 258 VNHLVARLGNRGFSVVALSGEFSQKERANALSSLRSGRARVCIATDVAARGLDLPKLDLV 317

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           I  +        LH+  GR GR        L+  P
Sbjct: 318 IHADLPRDPATLLHR-SGRTGRAGRKGISTLIVAP 351


>gi|57867605|ref|YP_189253.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis
           RP62A]
 gi|293366046|ref|ZP_06612734.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81673916|sp|Q5HME0|Y1688_STAEQ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SERP1688
 gi|57638263|gb|AAW55051.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           epidermidis RP62A]
 gi|291319769|gb|EFE60127.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726161|gb|EGG62633.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU144]
 gi|329734135|gb|EGG70453.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU045]
          Length = 509

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 142/340 (41%), Gaps = 53/340 (15%)

Query: 290 QKNRMLRILQGD-------VGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEF 340
           QK+ +   L+GD        G+GKT    I +   V  + G Q++I+AP   LA Q  E 
Sbjct: 29  QKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQQGVQSLILAPTRELAMQVAEQ 88

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-------- 392
           ++++++  ++ V  + G MP   + KAL+R       I++GT     D +          
Sbjct: 89  LREFSKGQKVQVVTVFGGMPIERQIKALKR----GPQIVVGTPGRVIDHLNRRTLKTQGI 144

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQK---ATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + LIL   DE    G    ++       A     +L +AT +P+ +         + +  
Sbjct: 145 HTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSAT-MPKAIQEL------VQQFM 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           + P   K IKT+   ++  D  I+    ++ E +K +       +  +     V  R   
Sbjct: 198 KAP---KIIKTMNNEMS--DPQIDEYYTIVKELEK-FDTFTNFLDVHQPELAIVFGRTKR 251

Query: 510 LHEHFTSSI-------AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             +  TS++         +HG ++   +  V+  FKN    +L+AT V   G+D+   S 
Sbjct: 252 RVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSH 311

Query: 563 I----IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +    I ++ E +     H++ GR GR  +    +   +P
Sbjct: 312 VYNFDIPQDTESY----THRI-GRTGRAGKEGIAVTFVNP 346


>gi|309750350|gb|ADO80334.1| ATP-dependent RNA helicase DeaD [Haemophilus influenzae R2866]
          Length = 613

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 143/356 (40%), Gaps = 61/356 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL---VALIAMAAAVEAGGQAVIMA 328
           +P+  Q+S I  +L      N +L + Q   GSGKT    + L+A     E   Q ++MA
Sbjct: 27  TPSPIQQSCIPHLLS----GNDVLGMAQ--TGSGKTAAFALPLLAQIDPSEKHPQMLVMA 80

Query: 329 PIGILAQQ---HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           P   LA Q     E   KY Q T+I+   + G      + +AL++     A +++GT   
Sbjct: 81  PTRELAIQVADACELFVKYAQGTRIVT--LYGGQRYDIQLRALKQ----GAQVVVGTPGR 134

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP---HVLLMTAT-PIP- 432
             D I+   L        +L   DE  R G    ++ T  A  P      L +AT P P 
Sbjct: 135 ILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVE-TVMAELPENHQTALFSATMPEPI 193

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL--------KVVLSEG 482
           R +    + D    KI         I      ++  R +E + R          ++ +  
Sbjct: 194 RRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIFART 253

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           K       ++ EK  + FRS                A ++G M+   +E  +D  +NG+ 
Sbjct: 254 KTGTLDITELLEK--NGFRS----------------AALNGDMTQQLREQTLDRLRNGSL 295

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +++AT V   GID+   S+++  +      + +H++ GR GR       +L   P
Sbjct: 296 DIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEP 350


>gi|333030556|ref|ZP_08458617.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332741153|gb|EGJ71635.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 378

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 138/317 (43%), Gaps = 46/317 (14%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E +K YT+ T +   +I G + Q  +   + R+  G   I++ T
Sbjct: 82  RALILTPTRELAIQIGESLKDYTRYTDLQYTVIFGGVKQGSQ---VNRLKAG-VDILVAT 137

Query: 383 HA-----LFQDSIQYYKLILVIVDEQHRF---GVQQRLK--LTQKATAPHVLLMTATPIP 432
                  + Q  I+  K+   ++DE  R    G    +K  L +       L  +AT +P
Sbjct: 138 PGRLLDLMHQGHIKINKVQHFVLDEADRMLDMGFIHDIKRLLPRLPKNRQTLFFSAT-MP 196

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R++   S           +   + PI+  + P + + + IE+    + +  K   +   +
Sbjct: 197 RSIASLS-----------RSILKNPIRIEVTPASSVVDTIEQEVYFVEQNDKKDLLVKLL 245

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAI---------IHGRMSDIDKESVMDSFKNGTCK 543
            E    + +SV+    + H       AI         IHG  S   ++  +++FK    +
Sbjct: 246 HE---GDMKSVLVFSRTKHGANKIVKAITKAGITSEPIHGNKSQNARQRALENFKAHKTR 302

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR----GEEISSCIL---LY 596
           +L+AT +   GID+ +  +++  +  +     +H++ GR GR    G+ ++ C     ++
Sbjct: 303 VLVATDIAARGIDIENLELVVNYDLPNIPETYVHRI-GRTGRAGNVGKALTFCAASERIF 361

Query: 597 HPPLSKNSYTRLSVLKN 613
              + K +  +LS++KN
Sbjct: 362 LKDIEKLTKNKLSIVKN 378


>gi|307710615|ref|ZP_07647049.1| primosomal protein N' [Streptococcus mitis SK564]
 gi|307618660|gb|EFN97802.1| primosomal protein N' [Streptococcus mitis SK564]
          Length = 798

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEII 355
           +LQG  GSGKT V L  +  A++ G  A+++ P I +  Q    FI ++ +     V I+
Sbjct: 285 LLQGITGSGKTEVYLQIIQGALDKGKTAILLVPEISLTPQMTERFIARFGEK----VAIL 340

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              +    +     ++  G A +++G  +     ++   L ++I+DE+H    +Q
Sbjct: 341 HSGLSNGEKYDEWRKVERGDAQVVVGARSAIFAPLK--NLGVMIIDEEHEVTYKQ 393


>gi|298713116|emb|CBJ33475.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 479

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 10/106 (9%)

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           E+I+ L  VL  G+   +       K+E++   + ER  +  + FT S+  +HG +  +D
Sbjct: 299 ELIQELYDVLEMGQSIIFC----RTKREADV--INERLQA--QGFTCSV--LHGSLDGVD 348

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           +++ M+ F+ G  K+L+ T V+  G+DV   S+++  +    G +Q
Sbjct: 349 RDATMEQFRLGHNKVLLTTNVLSRGVDVPAVSLVVNYDMPTMGYSQ 394


>gi|256272916|gb|EEU07884.1| Prp5p [Saccharomyces cerevisiae JAY291]
          Length = 849

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 156/396 (39%), Gaps = 78/396 (19%)

Query: 302 VGSGKTLVALIAMAAAV---------EAGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQII 351
            GSGKT+  L+ +   V         E G   +I+AP   LA Q +E + K+T+ +T I 
Sbjct: 302 TGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEADTSIR 361

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD--------SIQYYKLILVIVDEQ 403
               TG    +  +K +  +  G   I++ T   F D         +   ++  V++DE 
Sbjct: 362 SVCCTGG---SEMKKQITDLKRG-TEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEA 417

Query: 404 HRF---GVQQRLKLTQKATAP--HVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGR 455
            R    G + ++    K   P    +L +AT  P   R+  +  L               
Sbjct: 418 DRLFDLGFEPQITQIMKTVRPDKQCVLFSAT-FPNKLRSFAVRVL--------------H 462

Query: 456 KPIKTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKE---------SNFRSVVE 505
            PI   I     ++E V ++ ++  SE +K   +   I E+ E             S VE
Sbjct: 463 SPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIYERSEFFDEVQSENDGQSSDVE 522

Query: 506 RFNSLHEHFTSSIAI-----------------IHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             ++    F SS  I                 IH      ++   ++ FK     +L+ T
Sbjct: 523 EVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKREKNSILLCT 582

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPLSKNSYTR 607
            V+  G++V + S++II NA     AQ     GR  RG    + I LL H  LS  +Y  
Sbjct: 583 EVLSRGLNVPEVSLVIIYNAVK-TFAQYVHTTGRTARGSRSGTAITLLLHDELS-GAYIL 640

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
              +++ E   + A   L+ ++  E+    +SGM K
Sbjct: 641 SKAMRDEE---IKASNSLQAKELQEMSAKFESGMKK 673


>gi|171059675|ref|YP_001792024.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170777120|gb|ACB35259.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 477

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 134/312 (42%), Gaps = 38/312 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIV 352
           I Q   GSGKT    +A+ A +       Q++++ P   LA+Q  + +++  +    I V
Sbjct: 61  IAQAKTGSGKTAAFALALLANLNPRRFAVQSLVLCPTRELAEQVTQEVRRLARAEDHIKV 120

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRF- 406
             + G       R  L  + HG AHI+IGT     D ++   L L     +++DE  R  
Sbjct: 121 LTLVGGTTM---RPQLASLEHG-AHIVIGTPGRIMDHLERGSLDLSALNTLVLDEADRML 176

Query: 407 --GVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK---ITEKPAGRKPIK 459
             G    +K  + Q       LL +AT  P  +   S   +   K   +TEK A  K I+
Sbjct: 177 DMGFFDDIKTVIQQCPKERQTLLFSAT-YPEGIARISAAFMRAPKEIKLTEKHAAGK-IR 234

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            +   + R DE +  + ++L   +    +  C       +   R +V+    L     S+
Sbjct: 235 QIFYEV-REDERLHAVSLLLDHYRPVSTLAFC-----NTKQQCRDLVQ---VLRAQGYSA 285

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + + HG +   D++ V+  F N +C +L+AT +   G+D+     +I  N E       H
Sbjct: 286 LEL-HGDLEQRDRDQVLIQFANQSCSVLVATDIAARGLDISQLGAVI--NVEITPDIATH 342

Query: 578 QLR-GRVGRGEE 588
             R GR GR +E
Sbjct: 343 THRIGRTGRADE 354


>gi|76808776|ref|YP_332762.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           1710b]
 gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           1710b]
          Length = 559

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 122/297 (41%), Gaps = 51/297 (17%)

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM---PQ-AHRRKALERIAHGQAHI 378
           +A+I+ P   LA Q    +  Y ++T +   ++ G +   PQ A  R+ +E        I
Sbjct: 166 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVE--------I 217

Query: 379 IIGTHALFQDSIQYY-----KLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLLM 426
           +I T     D +Q       ++ ++++DE  R         +Q+ L L  K      LL 
Sbjct: 218 LIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER--QTLLF 275

Query: 427 TATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-K 483
           +AT  P  + L  T L +    ++    A    +  ++  +   D+    +K++     K
Sbjct: 276 SATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLK 335

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +    C         N +    R     E      A IHG  S  ++   +D+FK G  +
Sbjct: 336 QVIVFC---------NSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 386

Query: 544 LLIATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVGR----GEEISSC 592
            L+AT V   G+D+ +   +I      NAE +    +H++ GR GR    G+ +S C
Sbjct: 387 ALVATDVAARGLDIAELPAVINFDLPFNAEDY----VHRI-GRTGRAGASGDALSLC 438


>gi|327539317|gb|EGF25938.1| ATP-dependent DNA helicase, RecQ family [Rhodopirellula baltica
           WH47]
          Length = 1002

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L E     + + H  M   ++  V ++F  G    ++AT    +GID  D   ++  N  
Sbjct: 281 LPEKTGRKVGVYHAGMHPDERRRVQEAFMKGDLSAIVATNAFGMGIDKSDIRFVVHYNMP 340

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY 596
              L   +Q  GR GR  E+S C+LL+
Sbjct: 341 G-SLEAYYQEAGRAGRDGEMSQCLLLF 366


>gi|325995530|gb|ADZ50935.1| Cold-shock DEAD-box protein A [Helicobacter pylori 2018]
 gi|325997128|gb|ADZ49336.1| ATP dependent RNA helicase [Helicobacter pylori 2017]
          Length = 491

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 142/348 (40%), Gaps = 47/348 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++     +A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G       +K  E I      ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQ---SVKKQCEFIKKN-PQVMIATPGRLLDH 151

Query: 390 IQY---YKLI--LVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT---PIPRTLV 436
           ++    +K +  +V++DE         L   ++      +   +LL +AT   PI R   
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKR--- 208

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK- 495
              L D    KI E P     IK  I P N  +  I +   V++E ++A  I   ++ + 
Sbjct: 209 ---LAD----KILENP-----IKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256

Query: 496 --KESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             K   F    +  + LH+   S       +HG M   D+ S + +FK     +L+AT V
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|319646046|ref|ZP_08000276.1| PriA protein [Bacillus sp. BT1B_CT2]
 gi|317391796|gb|EFV72593.1| PriA protein [Bacillus sp. BT1B_CT2]
          Length = 805

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 9/143 (6%)

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P   T+ Q  A + I   + +K   + +L G  GSGKT V L ++   +EAG +A+++ P
Sbjct: 265 PLPLTEEQAQAYEAIADAIEEKRHDVFLLHGVTGSGKTEVYLQSIEKVLEAGKEAIVLVP 324

Query: 330 -IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALFQ 387
            I +  Q    F  ++       V ++   +    +     +I   +  +++G   A+F 
Sbjct: 325 EISLTPQMVNRFKGRFGSQ----VAVLHSGLSTGEKYDEWRKIHRKEVRLVVGARSAIF- 379

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ 410
               +  L ++I+DE+H    +Q
Sbjct: 380 --APFENLGMIIIDEEHETSYKQ 400


>gi|315930708|gb|EFV09723.1| type III restriction enzyme, res subunit [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 997

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 11/107 (10%)

Query: 290 QKNRMLRILQGD-------VGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEF 340
           QKN + R +Q +       VG+GKTLVA+ ++      G   + +I+ P  +  Q + EF
Sbjct: 566 QKNAIYRAIQENSIIFDHQVGAGKTLVAICSVMEQKRMGLLNKPLIVVPNHLARQWNDEF 625

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
              YT N  I+V     ++ + +R K   +IA      II TH+ F+
Sbjct: 626 YHAYT-NANILV-ATNDDLKKDNREKFFSKIATNNFDAIIMTHSQFK 670


>gi|308159971|gb|EFO62485.1| ATP-dependent RNA helicase-like protein [Giardia lamblia P15]
          Length = 655

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +NF+S  +R     +     +A+IHG M+  ++E+ +  FK G   +LI T V + G+D+
Sbjct: 476 TNFKSEADRIFRYFDDMRYRVAVIHGDMTQKERENNLKYFKAGRTNILIGTDVAQRGLDI 535

Query: 558 VDASIIIIENAEHFGLAQLHQLR-GRVGRG 586
            +  +++  N +  G    +  R GR GR 
Sbjct: 536 PNVRLVL--NYDLPGNVDDYTHRIGRTGRA 563


>gi|298695355|gb|ADI98577.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 487

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 134/324 (41%), Gaps = 46/324 (14%)

Query: 299 QGDVGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           Q   G+GKT    I +   V  + G Q++I+AP   LA Q  E ++++++   + V  + 
Sbjct: 26  QAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVF 85

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGV 408
           G MP   + KAL++       I++GT     D +          + LIL   DE    G 
Sbjct: 86  GGMPIERQIKALKK----GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGF 141

Query: 409 QQRLKLTQK---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
              ++       A     +L +AT +P+ +         + +  + P   K IKT+   +
Sbjct: 142 IDDMRFIMDKIPAVQRQTMLFSAT-MPKAIQAL------VQQFMKSP---KIIKTMNNEM 191

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI------- 518
           +  D  IE    ++ E +K +       +  +     V  R     +  TS++       
Sbjct: 192 S--DPQIEEFYTIVKELEK-FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKA 248

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEHFGLA 574
             +HG ++   +  V+  FKN    +L+AT V   G+D+   S +    I ++ E +   
Sbjct: 249 EGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY--- 305

Query: 575 QLHQLRGRVGRGEEISSCILLYHP 598
             H++ GR GR  +    +   +P
Sbjct: 306 -THRI-GRTGRAGKEGIAVTFVNP 327


>gi|163868666|ref|YP_001609875.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
 gi|161018322|emb|CAK01880.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
          Length = 467

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 147/355 (41%), Gaps = 61/355 (17%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QA 324
           P   QE AI  +L+     + +L I Q   GSGKTL   + + + + A G        +A
Sbjct: 41  PKPIQEQAIPMMLKG----HDILGIAQ--TGSGKTLAFGLPILSQILALGDKRCPKTARA 94

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+AP   LA Q  E I+   +   +   ++ G +    R K ++R+A G   ++I T  
Sbjct: 95  LILAPTRELAVQIDEAIRTMAKGAHLSTCLVFGGV---SRLKQIKRMAAG-VDVLIATPG 150

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRLKLTQKATAPHVLLMTATPIP 432
             +D ++   + L     +I+DE  R         V+Q  KL  +       L +AT   
Sbjct: 151 RLRDLVREKCVDLSQSRFLILDEADRMLDMGFIHDVKQIAKLLHQER--QTALFSATMPK 208

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
               L      D  KI   P G   +           E+ ++L  V +  KK       +
Sbjct: 209 EIAALAKCLLNDPVKIEVAPQGTTAL-----------EITQKLYCVPTSEKK------NV 251

Query: 493 EEKKESN--FRSVVERFNSLHE------HFTSS---IAIIHGRMSDIDKESVMDSFKNGT 541
             K  +N  F SV+    + H       H   +   +A IHG  S   ++S + +F+  +
Sbjct: 252 LSKLLTNPAFDSVIVFTRTKHGADAVTLHLAKNGYLVATIHGNKSQGARQSALKAFRERS 311

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            K+L+AT +   GID+   S +I  +      + +H++ GR GR       + L+
Sbjct: 312 VKILVATDIAARGIDIPGISHVINYDLPDEAESYVHRI-GRTGRNGASGEALTLF 365


>gi|156053564|ref|XP_001592708.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980]
 gi|160380639|sp|A7EJY3|DED1_SCLS1 RecName: Full=ATP-dependent RNA helicase ded1
 gi|154703410|gb|EDO03149.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 678

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 55/267 (20%), Positives = 114/267 (42%), Gaps = 48/267 (17%)

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           ++I+AP   L  Q ++  +K+   + +   ++ G      + + +ER       +++ T 
Sbjct: 274 SLILAPTRELVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQMER----GCDLLVATP 329

Query: 384 ALFQDSIQYYKLIL-----VIVDEQHRF-------------------GVQQRLKLTQKAT 419
               D I+  ++ L     +++DE  R                    GVQ R  L   AT
Sbjct: 330 GRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGVQNRQTLMFSAT 389

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDIS--KITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            P  + M A    +  V  S+G +  +   IT+K          +  +  ID+    L +
Sbjct: 390 FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQK----------VEYVEDIDKRSVLLDI 439

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           + + G     I   +E K+ ++  S       ++++F ++   IHG  +  ++E  ++ F
Sbjct: 440 LHTHGAGLTLIF--VETKRMADSLSDF----LINQNFPATS--IHGDRTQRERERALEMF 491

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIII 564
           +NG C +L+AT V   G+D+ + + ++
Sbjct: 492 RNGRCPILVATAVAARGLDIPNVTHVV 518


>gi|73965223|ref|XP_861654.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 7 [Canis
           familiaris]
          Length = 552

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  +  +     +H++ 
Sbjct: 309 IHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI- 367

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           GR  R  +  +    + P   K     +SVL+
Sbjct: 368 GRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 399


>gi|262396801|ref|YP_003288654.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|269966728|ref|ZP_06180805.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|262340395|gb|ACY54189.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|269828651|gb|EEZ82908.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 430

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 126/306 (41%), Gaps = 35/306 (11%)

Query: 302 VGSGKTLVALIAM--------AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            G+GKT    + M         +A     +A+I+AP   LA+Q  + IK YT+ T + V 
Sbjct: 47  TGTGKTAAFSLPMIQQLLDSNRSASRKTARALILAPTRELAEQIADNIKAYTKYTNLSVA 106

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHR--- 405
            I G    + +  ALE        I++ T         Q ++    L  ++ DE  R   
Sbjct: 107 AIFGGRKMSSQVAALE----NGVDILVATPGRLEEHIEQGNVSVAHLEFLVFDEADRILD 162

Query: 406 --FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             F    R  +    T P +++ +AT   + L L +   +   K  E        +TV  
Sbjct: 163 MGFIHAVRKIMLDVDTDPQIMMFSATTSSQ-LNLLAKDILRKPKRIEVERANTTAQTVAH 221

Query: 464 PINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVE-RFNSLHEHFTSSIAI 520
            +  +D+  ER   +LSE  G+K +         KE+    V E + + +         +
Sbjct: 222 VLYPVDQ--ERKTELLSELIGRKNWKQVLVFVNYKETANEVVKELKLDGI------KAVV 273

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG  +   +   ++ FK+G  ++++AT V   G+D+ D   ++  +        +H++ 
Sbjct: 274 CHGDRAQSARRRALEEFKSGKARVMVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRI- 332

Query: 581 GRVGRG 586
           GR GR 
Sbjct: 333 GRTGRA 338


>gi|19173435|ref|NP_597238.1| P68-LIKE PROTEIN (DEAD BOX FAMILY OF RNA HELICASES)
           [Encephalitozoon cuniculi GB-M1]
 gi|74664187|sp|Q8SRB2|DBP2_ENCCU RecName: Full=ATP-dependent RNA helicase DBP2
 gi|19171024|emb|CAD26414.1| P68-LIKE PROTEIN (DEAD BOX FAMILY OF RNA HELICASES)
           [Encephalitozoon cuniculi GB-M1]
          Length = 495

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 138/339 (40%), Gaps = 49/339 (14%)

Query: 276 SQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQ----------A 324
           S+ +AI+     M+   R M+ I Q   GSGKTL  +  + A V A  Q           
Sbjct: 108 SEPTAIQGQGWPMALSGRDMVGIAQ--TGSGKTLSFI--LPALVHAKDQQPLRRGDGPIV 163

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   L  Q  + + ++     +    + G      + +AL    H  A ++I T  
Sbjct: 164 LVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRAL----HEGAEVVIATPG 219

Query: 385 LF-----QDSIQYYKLILVIVDEQHRF---GVQQRL-KLTQKATAPHVLLMTATPIPRTL 435
                  Q      ++  +++DE  R    G + +L K+  K  A    LM +   PR +
Sbjct: 220 RLIDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNANRQTLMWSATWPREV 279

Query: 436 VLTSLGDIDISKITEKPAGRKPIKT-----VIIPINRIDEVIERLKVVLS--EGKKAYWI 488
               L +  +++  +   G + +KT      I+ +    E  ++L  VL   +G K    
Sbjct: 280 --RGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIGVLDNFKGDKVIVF 337

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C         N +   +    +        A +HG  S   ++ V+D F++G   +LIAT
Sbjct: 338 C---------NMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIAT 388

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRG 586
            V   G+DV D  ++I  N +  G  + +  R GR  RG
Sbjct: 389 EVAGRGLDVNDVKLVI--NFDFPGSCEDYVHRIGRTARG 425


>gi|86134570|ref|ZP_01053152.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85821433|gb|EAQ42580.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 450

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           F  L E F S   +IH   +   +   +  F  G  ++L+AT V+  G+D  + S +I  
Sbjct: 259 FKHLEEVFGSETCVIHSNKTQNYRIRSIRQFDEGNNRILVATDVMARGLDFDNVSHVINF 318

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +   F    +H++ GR GR E+    ILL
Sbjct: 319 DTPDFPENYMHRI-GRTGRAEKAGKTILL 346


>gi|328467144|gb|EGF38233.1| ATP-dependent DNA helicase RecQ [Lactobacillus helveticus MTCC
           5463]
          Length = 538

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +N R  VE           S+   HG M   ++  + ++F+    ++++AT    +GID 
Sbjct: 183 TNTRKKVESLTDYLAKKGISVGAYHGGMDAKERSQIQEAFQFDEFQVIVATNAFGMGIDK 242

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +   ++  ++    +   +Q  GR GR  E S  +++YHP
Sbjct: 243 SNVRFVVHASSAR-NIESYYQEAGRAGRDGEESEAVMIYHP 282


>gi|325291138|ref|YP_004267319.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324966539|gb|ADY57318.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 518

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 127/321 (39%), Gaps = 36/321 (11%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAV---IMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           I Q   G+GKT    I M   +E   + +   ++ P   LA Q  E I K  Q   I  +
Sbjct: 43  IGQAQTGTGKTAAFAIPMIENLERHAEGIGGLVVTPTRELAVQVAEEINKIGQFKGIHAQ 102

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
            I G      + +AL      +  II+GT     D ++ + +        +L   DE   
Sbjct: 103 PIYGGQDINRQIRAL----RNRPQIIVGTPGRLMDHMRRHTIRLDHVSMAVLDEADEMLS 158

Query: 406 FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            G  + ++  L +       LL +AT     L L+    ++   I+ K       K V +
Sbjct: 159 MGFIEDIESILGEIQHKHQTLLFSATMPQSILNLSKRFMLEPEFISIK------AKEVTV 212

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---NFRSVVERFNSLHEHFTS---S 517
           P        E+  V L E +K   +C  ++ +       F     R + L+E       S
Sbjct: 213 P------NTEQYYVELPERQKFDVLCRLLDIQSPDLAIVFGRTKRRVDELYEALNKRGYS 266

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              IHG ++ + ++SV+  FK G   +L+AT V   G+D+   + I   +      + +H
Sbjct: 267 AEGIHGDLTQLRRDSVLRHFKEGVTDILVATDVAARGLDISGVTHIYNFDIPQDPESYVH 326

Query: 578 QLRGRVGRGEEISSCILLYHP 598
           ++ GR GR  +    +    P
Sbjct: 327 RI-GRTGRAGKTGLAVTFVTP 346


>gi|317013693|gb|ADU81129.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Gambia94/24]
          Length = 491

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 142/348 (40%), Gaps = 47/348 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++     +A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G       +K  E I      ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQ---SVKKQCEFIKKN-PQVMIATPGRLLDH 151

Query: 390 IQY---YKLI--LVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT---PIPRTLV 436
           ++    +K +  +V++DE         L   ++      +   +LL +AT   PI R   
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKR--- 208

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK- 495
              L D    KI E P     IK  I P N  +  I +   V++E ++A  I   ++ + 
Sbjct: 209 ---LAD----KILENP-----IKIHIAPSNITNADITQRFYVINEHERAEAIMRLLDTQA 256

Query: 496 --KESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             K   F    +  + LH+   S       +HG M   D+ S + +FK     +L+AT V
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|289191739|ref|YP_003457680.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
           FS406-22]
 gi|288938189|gb|ADC68944.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
           FS406-22]
          Length = 808

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 139/338 (41%), Gaps = 44/338 (13%)

Query: 304 SGKTLVA-LIAMAAAVEAGGQAVIMAPIGILAQQHY-EFIKKYTQ-NTQIIVEIITGNMP 360
           SGKTL+  L  +   VE G + + + P+  LA Q Y EF ++Y +   ++ + +  G + 
Sbjct: 238 SGKTLIGELAGIKNLVETGKKFLFLVPLVALANQKYLEFKERYEKLGFKVSLRVGLGRIG 297

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI---LVIVDEQHRFGVQQR------ 411
                K ++      A II+GT+      I+  +L     V++DE H   +++R      
Sbjct: 298 -----KKVDVETSLDADIIVGTYEGIDYLIRTKRLKDIGTVVIDEIHSLNLEERGARLDG 352

Query: 412 ----LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI--KTVIIPI 465
               L+   K T   + L      P+ L       + +      P  R  I  K     +
Sbjct: 353 LIGRLRFLFKDTQ-KIYLSATIGNPKELAKQLGAKLVLYNGRPVPLERHIIFCKNDFAKL 411

Query: 466 NRIDEVIERLKVVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
           N I E+++R    +S+ G +   +      K+  +    ++      E +       HG 
Sbjct: 412 NIIKEIVKREWQNISKFGYRGQCLIFTYSRKRAEHLAKSLKAKGIKAEFY-------HGG 464

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN----AEHFGLAQLHQLR 580
           M  I +  V D F N   + ++ T  +  G+D   AS +I+E+     +    A+  Q+ 
Sbjct: 465 MEYIRRRKVEDDFANQKIQCIVTTAALSAGVD-FPASTVILESLAMGGDWLNPAEFQQMC 523

Query: 581 GRVGRG--EEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           GR GR    EI    LL    + K  + +   ++NTED
Sbjct: 524 GRAGRKGMHEIGKVYLLVE--IGKKYHAK---MENTED 556


>gi|229098758|ref|ZP_04229696.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-29]
 gi|229104916|ref|ZP_04235573.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-28]
 gi|228678490|gb|EEL32710.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-28]
 gi|228684602|gb|EEL38542.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-29]
          Length = 436

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 138/325 (42%), Gaps = 40/325 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYT----QNTQ 349
           I Q   GSGKT   L+     +       Q VI AP   LAQQ YE I K T    ++  
Sbjct: 45  IGQSQTGSGKTHAYLLPTLNRINPSREEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQM 104

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQH 404
           I    + G      +++++E++   Q HI++GT    +D ++      YK   +IVDE  
Sbjct: 105 ITARCLIGG---TDKQRSIEKLKK-QPHIVVGTPGRIKDLVEEKALFVYKADTIIVDEAD 160

Query: 405 ---RFG-VQQRLKLTQKATAPHVLLMTATPIPRTL---VLTSLGDIDISKITEKPAGRKP 457
                G +Q   K+  +      +L+ +  IP+ L   +   + + +   I  K      
Sbjct: 161 LMLDMGFIQDVDKIAARMPKNLQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGN 220

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           I+  ++P +R    IE +K +L + K    I     +KK        E  + L E     
Sbjct: 221 IEHYLVP-SRHRNKIELVKNMLLQFKPYLAIVFTNTKKKAD------EVADGLAER-GLK 272

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHFGL 573
           +  IHG +S  D++ +M   ++   + ++AT +   GID+   S +I      + + F  
Sbjct: 273 VGRIHGDLSPRDRKKMMKQVRDLEFQYIVATDLAARGIDIEGISHVINYELPSDLDFF-- 330

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP 598
             +H++ GR  R       + +Y P
Sbjct: 331 --VHRV-GRTARAGHSGIAVTIYDP 352


>gi|229184685|ref|ZP_04311885.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1]
 gi|228598789|gb|EEK56409.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1]
          Length = 447

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 136/315 (43%), Gaps = 49/315 (15%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIV 352
           I Q   G+GKTL  ++ +   ++   +  QA+I+AP   LA Q    IKK   Q   I V
Sbjct: 43  IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINV 102

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR-- 405
             I G    A + + L+    G  HI++ T     D     +I    L  +++DE  +  
Sbjct: 103 LAIYGGQDVAQQLRKLK----GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 158

Query: 406 -FGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            FG    ++  L +   +   +L +AT +P+          DI K+ ++      +  V 
Sbjct: 159 YFGFLYDIEDILDETPGSKQTMLFSAT-MPK----------DIKKLAKRYMDEPQMIQVQ 207

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----ERFNSLHEHFTS- 516
                +D + +R   V+    +A     +    ++  F +V+      R + L+++    
Sbjct: 208 SEEVTVDTIEQR---VIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 264

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII----IIENAEH 570
             + A +HG +    +E VM SF+    + LIAT V   G+DV   + +    I E+ E 
Sbjct: 265 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVES 324

Query: 571 FGLAQLHQLRGRVGR 585
           +    +H++ GR GR
Sbjct: 325 Y----IHRI-GRTGR 334


Searching..................................................done


Results from round 2




>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040622|gb|ACT57418.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 700/700 (100%), Positives = 700/700 (100%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK
Sbjct: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG
Sbjct: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS
Sbjct: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL
Sbjct: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG
Sbjct: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP
Sbjct: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA
Sbjct: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS
Sbjct: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG
Sbjct: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
           TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL
Sbjct: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR
Sbjct: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG
Sbjct: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700


>gi|315122358|ref|YP_004062847.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495760|gb|ADR52359.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 700

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 567/700 (81%), Positives = 642/700 (91%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPS LNPLFAPLS+ RGVG+K  L  SKII+ GNANE+RFIDLLFY+PSSFIDR Y PK
Sbjct: 1   MRPSLLNPLFAPLSSLRGVGEKNVLLFSKIIDFGNANESRFIDLLFYYPSSFIDRRYHPK 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           ISEISEER+VTITG+I+   S +  K+ PY+ILLNDGTGEI+LLFF++KTE LKN+FF+G
Sbjct: 61  ISEISEERVVTITGHIASLPSVRSPKKIPYQILLNDGTGEISLLFFHKKTEWLKNIFFKG 120

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           RKITVTG+IKK KNR+ M+HPHY F++SQDV  PLIE +YSLPTGLS D FKKI+ EALS
Sbjct: 121 RKITVTGQIKKFKNRLTMIHPHYFFYDSQDVILPLIEPIYSLPTGLSADFFKKIVDEALS 180

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           RLP LPEW+E DLLQ+KSFPS+ EAF IIHNPR  KDFEWTSPARERLAYDE LAGQIAL
Sbjct: 181 RLPTLPEWLENDLLQEKSFPSMKEAFKIIHNPRDVKDFEWTSPARERLAYDEFLAGQIAL 240

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           LL+RK+FK+E+GIPI VEGKIAQKI++++PFSPTKSQ  AI+DILQDMSQKNRMLRILQG
Sbjct: 241 LLVRKKFKEELGIPIQVEGKIAQKIVQSLPFSPTKSQNLAIRDILQDMSQKNRMLRILQG 300

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVALIAMA AVEAGGQAVIMAPIGILAQQHYEFIKKYTQ++QI +EIITGNMP
Sbjct: 301 DVGSGKTLVALIAMATAVEAGGQAVIMAPIGILAQQHYEFIKKYTQDSQIGIEIITGNMP 360

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           ++ R+ AL+RIA+GQA IIIGTHALFQDSIQY+KLIL++VDEQHRFGVQQRLKLTQK  +
Sbjct: 361 KSQRKIALKRIANGQAQIIIGTHALFQDSIQYHKLILIVVDEQHRFGVQQRLKLTQKGNS 420

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PHVLLMTATPIPRTL+LT+ GDI++SKITEKPAGRKPIKTVIIPI+RI+EV+ERLKVV+S
Sbjct: 421 PHVLLMTATPIPRTLILTAFGDINVSKITEKPAGRKPIKTVIIPISRINEVVERLKVVVS 480

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           E KKAYWICPQIEEK+ES+F SV+ERF SL E F S IAIIHGRMSD DKES+M+SFKNG
Sbjct: 481 ENKKAYWICPQIEEKEESHFCSVIERFKSLQEQFGSDIAIIHGRMSDTDKESIMNSFKNG 540

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
           T KLLIATTVIEVG+DV+DASIIIIE+AEHFGLAQLHQLRGRVGRGEE+SSCILLYHPPL
Sbjct: 541 TYKLLIATTVIEVGVDVIDASIIIIEHAEHFGLAQLHQLRGRVGRGEEVSSCILLYHPPL 600

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+ SYTRLS+L+NTEDGFLIAEEDLKQR EGEILGIKQSGMPKFLIAQPELH +LLEIAR
Sbjct: 601 SRVSYTRLSILRNTEDGFLIAEEDLKQRGEGEILGIKQSGMPKFLIAQPELHSTLLEIAR 660

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           KDA +I+ QDP+LTSVRG+S+RILLYLY+YNEAFQFI+AG
Sbjct: 661 KDAINIIKQDPNLTSVRGRSLRILLYLYRYNEAFQFIKAG 700


>gi|327188304|gb|EGE55523.1| ATP-dependent DNA helicase protein [Rhizobium etli CNPAF512]
          Length = 701

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/701 (53%), Positives = 496/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K++      + R IDLLF+ P S IDR  +P 
Sbjct: 1   MRPAILDPLFSPISGLPGVGPKIAELLVKLLGREAPEDCRVIDLLFHAPFSLIDRRNQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 61  IARAPQGAIVTITARVDRHQVPPRGKSNVPYRVFLHDDTGELTLVFFRGQAAWLEKQLPI 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GK+     R  MVHP YI    +  N PL+E +Y L  GLS    +KII  AL
Sbjct: 121 DAEVTVSGKVDWFNGRASMVHPDYIVRADEAENLPLVEPIYPLTAGLSPKTLRKIIDAAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            R P LPEWI+  L QK+  PSI ++F+++H PR   D +  +PAR RLAYDE LAGQ++
Sbjct: 181 PRFPELPEWIDPALAQKQGLPSIRDSFHMLHEPRDPSDIDPQAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G P+   G ++ KIL+ +PFSPT SQ  AI DIL+DM+   RMLR+LQ
Sbjct: 241 LSLVRQRLRKVAGQPVLATGAVSGKILKTLPFSPTSSQNEAIADILKDMAGTERMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVALI+MAA +E+GGQAV+MAP  ILA+QH+  I K+  +  + +E++TG  
Sbjct: 301 GDVGSGKTLVALISMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + LERIA G A I+IGTHALFQDS+ Y KL+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGREREEILERIASGAAQIVIGTHALFQDSVTYDKLMLAVVDEQHRFGVHQRLRLTAKGI 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+T+ +P+ R  E++ RL+  L
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTITVPMERTGEIVGRLQSAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +EGKKAYWICP +EE +E +  S  ER  +L       I +IHGRMS  +K++ M +FKN
Sbjct: 481 AEGKKAYWICPLVEESEELDLMSAEERHATLVAALGPDIGLIHGRMSGPEKDAAMMAFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L +  + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R DA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+RAG
Sbjct: 661 RNDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFLRAG 701


>gi|222085971|ref|YP_002544503.1| ATP-dependent DNA helicase RecG [Agrobacterium radiobacter K84]
 gi|221723419|gb|ACM26575.1| ATP-dependent DNA helicase RecG [Agrobacterium radiobacter K84]
          Length = 701

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/701 (53%), Positives = 508/701 (72%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLFA +S+  GVG K +  L K+++    ++ R +DLLF+ P S IDR  +P 
Sbjct: 1   MRPAILDPLFASISSLPGVGPKVAELLVKLLDRETIDDCRVVDLLFHAPHSIIDRREQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTITG + +H      +   PY++ L+D TGE+ L+FF  K + L+     
Sbjct: 61  IARAPQGAIVTITGRVDRHQPPPNPRSNVPYRVFLHDETGELGLVFFRGKAQWLEKQLPI 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
              +TV+GK+     R  MVHP YI   S+  N PL+E VY L  GL++   +K +  AL
Sbjct: 121 DETVTVSGKVDWFNGRPSMVHPDYIMRESEAQNLPLVEPVYPLTAGLALKFLRKTVEAAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +RLP LPEW ++ L QK+ FPSI+++F+++H P  A D +  +PAR RLAYDE LAGQ++
Sbjct: 181 ARLPQLPEWDDEALAQKQGFPSISDSFHMLHAPLDAADIDPQAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G P++  G I++KIL ++PFS T SQ +AI DIL+DM+  +RMLR+LQ
Sbjct: 241 LALVRQRLRKVAGQPVHPTGDISRKILESLPFSLTNSQTAAIADILKDMAGTDRMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKTLVAL+A+AA +E+GGQAV+MAP  ILA+QHY  I K+  +  + VE++TG  
Sbjct: 301 GDVGAGKTLVALMAIAAVIESGGQAVLMAPTEILARQHYATIAKFAASANLSVEVLTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   LERIA G+A I+IGTHALFQDS+ Y  L+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGRERDAILERIASGEAQIVIGTHALFQDSVSYANLMLAVVDEQHRFGVHQRLRLTAKGI 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+T+ +P  R  +++ RLK  L
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTITVPTERTGDIVSRLKSAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           SEGKKAYWICP +EE +ES+  SV ER  +L +     I +IHGRMS  +K++VM +FKN
Sbjct: 481 SEGKKAYWICPLVEESEESDLMSVEERHATLVKALGPGIGLIHGRMSGPEKDAVMMAFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GEIRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L +  + RLS++++TEDGF IAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 601 LGETGHARLSIMRDTEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DPDLT  RG ++R LLYL++ +EA +F+RAG
Sbjct: 661 RKDAAYLIDRDPDLTGERGMAVRTLLYLFRRDEAIRFLRAG 701


>gi|190891737|ref|YP_001978279.1| ATP-dependent DNA helicase [Rhizobium etli CIAT 652]
 gi|190697016|gb|ACE91101.1| ATP-dependent DNA helicase protein [Rhizobium etli CIAT 652]
          Length = 701

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/701 (53%), Positives = 497/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K++      + R IDLLF+ P + IDR  +P 
Sbjct: 1   MRPAILDPLFSPISGLPGVGPKIAELLVKLLGRETPEDCRVIDLLFHAPFALIDRRNQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 61  IARAPQGAIVTITARVDRHQVPPRGKSNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPI 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GK+     R  MVHP YI    +  N PL+E +Y L  GLS    +KII  AL
Sbjct: 121 DAEVTVSGKVDWFNGRASMVHPDYIVRAEEAENLPLVEPIYPLTAGLSPKTLRKIIDAAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            R P LPEWI+  L QK+  PSI ++F+++H PR   D +  +PAR RLAYDE LAGQ++
Sbjct: 181 PRFPELPEWIDPALAQKQGLPSIRDSFHMLHEPRDPSDIDPQAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G P+   G ++ KIL+ +PFSPT SQ  AI DIL+DM+   RMLR+LQ
Sbjct: 241 LSLVRQRLRKVAGQPVLATGAVSGKILKTLPFSPTSSQNEAIADILKDMAGTERMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVAL++MAA +E+GGQAV+MAP  ILA+QH+  I K+  +  + +E++TG  
Sbjct: 301 GDVGSGKTLVALMSMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + LERIA G A I+IGTHALFQDS+ Y KL+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGREREEILERIASGAAQIVIGTHALFQDSVTYDKLMLAVVDEQHRFGVHQRLRLTAKGI 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+T+ +P+ R  E++ RL+  L
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTITVPMERTGEIVGRLQSAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +EGKKAYWICP +E+ +E +  S  ER  +L       I +IHGRMS  +K++ M +FKN
Sbjct: 481 AEGKKAYWICPLVEDSEELDLMSAEERHATLSTALGPDIGLIHGRMSGPEKDAAMMAFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L +  + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+RAG
Sbjct: 661 RKDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFLRAG 701


>gi|209549324|ref|YP_002281241.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535080|gb|ACI55015.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 701

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/701 (52%), Positives = 498/701 (71%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K++      + R IDL+F+ P S IDR  +P 
Sbjct: 1   MRPAILDPLFSPISGLPGVGPKIAELLVKLLGRETPEDCRVIDLIFHAPFSLIDRRNQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 61  IARAPQGAIVTITARVDRHQVPPRGKSNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPV 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GK+     R  MVHP YI    +  N PL+E +Y L  GLS    +KII  AL
Sbjct: 121 DAEVTVSGKVDWFNGRASMVHPDYIVRADEAENLPLVEPIYPLTAGLSPKTLRKIIDAAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            R P LPEWI++ L QK+  P+I ++F+++H PR   D +  +PAR RLAYDE LAGQ++
Sbjct: 181 PRFPELPEWIDQALAQKQGLPTIRDSFHMLHEPRDPADIDAQAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G P+   G+++ KIL+++PFS T SQ  AI ++L+DM+   RMLR+LQ
Sbjct: 241 LSLVRQRLRKVAGQPVQATGEVSAKILKSLPFSLTSSQNEAIAEVLKDMAGTERMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVAL+AMAA +E+GGQAV+MAP  ILA+QH+  I K+  +  + +EI+TG  
Sbjct: 301 GDVGSGKTLVALMAMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEILTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + L+RIA G A IIIGTHALFQDS+ Y KL+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGREREEILDRIASGAAQIIIGTHALFQDSVAYAKLMLAVVDEQHRFGVHQRLRLTAKGI 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+T+ +P+ R  E++ RL+  L
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTITVPMERTGEIVGRLQSAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +EGKKAYWICP +EE +E +  S  ER  +L       I +IHGRMS  +K++ M +FKN
Sbjct: 481 AEGKKAYWICPLVEESEELDLMSAEERHATLVAALGPDIGLIHGRMSGPEKDAAMMAFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L +  + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DP+LTS RG +IR LLYL++ +EA +F+RAG
Sbjct: 661 RKDAAYLIERDPELTSERGTAIRTLLYLFRRDEAIRFLRAG 701


>gi|86357712|ref|YP_469604.1| ATP-dependent DNA helicase protein [Rhizobium etli CFN 42]
 gi|86281814|gb|ABC90877.1| ATP-dependent DNA helicase protein [Rhizobium etli CFN 42]
          Length = 701

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/701 (52%), Positives = 494/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K+       + R IDLLF+ P S IDR  +P 
Sbjct: 1   MRPAILDPLFSPISGLPGVGPKIAELLVKLFGRETVEDCRVIDLLFHAPFSLIDRRNQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I    +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 61  IGLAPQGAIVTITARVDRHLVPPRGKSNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPV 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GK+     R  MVHP YI    +  + PL+E +Y L  GLS    +KII  AL
Sbjct: 121 DAEVTVSGKVDWFNGRASMVHPDYIVKAEEVESLPLVEPIYPLTAGLSPKTLRKIIDAAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            R P +PEWI+  L QK+  PSI ++F+++H PR   D +  +PAR RLAYDE LAGQ++
Sbjct: 181 PRFPEMPEWIDLTLTQKQGLPSIRDSFHMLHEPRDPSDVDPQAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++  K  G P++  G ++ KI++ +PFS T SQ  AI +IL+DM+   RMLR+LQ
Sbjct: 241 LSLVRQRLHKVAGQPVHATGAVSSKIVKALPFSLTSSQNDAIAEILKDMAGAERMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVAL+AMAA +E+GGQAV+MAP  ILA+QH+  I K+  +  + +E++TG  
Sbjct: 301 GDVGSGKTLVALMAMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + LERIA G A IIIGTHALFQDS+ Y KL+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGREREEILERIASGAAQIIIGTHALFQDSVTYDKLMLAVVDEQHRFGVHQRLRLTAKGI 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKP GRKPI+T+ +P+ R  E++ RL+  L
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPVGRKPIQTITVPMERTGEIVGRLQSAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +EGKKAYWICP +EE +E +  S  ER  +L     S I +IHGRMS  +K++ M +FKN
Sbjct: 481 AEGKKAYWICPLVEESEELDLMSAEERHATLVAALGSDIGLIHGRMSGPEKDAAMVAFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L +  + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+RAG
Sbjct: 661 RKDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFLRAG 701


>gi|37728039|gb|AAO43500.1| recombination and repair protein [Rhizobium etli]
          Length = 701

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/701 (52%), Positives = 493/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K+       + R IDLLF+ P S IDR  +P 
Sbjct: 1   MRPAILDPLFSPISGLPGVGPKIAELLVKLFGRETVEDCRVIDLLFHAPFSLIDRRNQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I    +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 61  IGLAPQGAIVTITARVDRHLVPPRGKSNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPV 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GK+     R  MVHP YI    +  + PL+E +Y L  GLS    +KII  AL
Sbjct: 121 DAEVTVSGKVDWFNGRASMVHPDYIVKAEEVESLPLVEPIYPLTAGLSPKTLRKIIDAAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            R P +PEWI+  L QK+  PSI ++F+++H PR   D +  +PAR RLAYDE LAGQ++
Sbjct: 181 PRFPEMPEWIDLTLTQKQGLPSIRDSFHMLHEPRDPSDVDPQAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++  K  G P++  G ++ KI++ +PFS T SQ  AI +IL+DM+   RMLR+LQ
Sbjct: 241 LSLVRQRLHKVAGQPVHATGAVSSKIVKALPFSLTSSQNDAIAEILKDMAGAERMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVAL+AMAA +E+GGQAV+MAP  ILA+QH+  I K+  +  + +E++TG  
Sbjct: 301 GDVGSGKTLVALMAMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + LERIA G A IIIGTHALFQDS+ Y KL+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGREREEILERIASGAAQIIIGTHALFQDSVTYDKLMLAVVDEQHRFGVHQRLRLTAKGI 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + G +D+SK+TEKP GRKPI+T+ +P+ R  E++ RL+  L
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGHMDVSKLTEKPVGRKPIQTITVPMERTGEIVGRLQSAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +EGKKAYWICP +EE +E +  S  ER  +L     S I +IHGRMS  +K++ M +FKN
Sbjct: 481 AEGKKAYWICPLVEESEELDLMSAEERHATLVAALGSDIGLIHGRMSGPEKDAAMVAFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L +  + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+RAG
Sbjct: 661 RKDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFLRAG 701


>gi|116252136|ref|YP_767974.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256784|emb|CAK07874.1| putative ATP-dependent DNA helicase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 701

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/701 (52%), Positives = 492/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K++      + R IDLLF+ P S IDR  +P 
Sbjct: 1   MRPAILDPLFSPISGLPGVGPKIADLLVKLLGRETLEDCRVIDLLFHAPFSLIDRRNQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 61  IARAPQGAIVTITARVDRHQVPPGGKSNIPYRVFLHDETGELTLVFFRGQAAWLEKQLPV 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GKI     R  MVHP YI    +  + PL+E +Y L  GLS    +KII   L
Sbjct: 121 DAEVTVSGKIDWFNGRASMVHPDYIVRADEAESLPLVEPIYPLTAGLSPKTLRKIIDAGL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            R P LPEWI+  L +K+  PSI ++F+++H PR   D +  +PAR RLAYDE LAGQ++
Sbjct: 181 PRFPELPEWIDLALTEKQGLPSIRDSFHMLHEPRDPSDIDPRAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G P+   G I+ KIL+ +PFS T SQ  AI ++L+DM+   RMLR+LQ
Sbjct: 241 LSLVRQRLRKVAGQPVTATGAISSKILKTLPFSLTGSQNEAIAEVLKDMAGNERMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVAL+AMAA +E+GGQAV+MAP  ILA+QH+  I K+  +  + +E++TG  
Sbjct: 301 GDVGSGKTLVALMAMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + LERIA G A I+IGTHALFQDS+ Y  L+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGREREEILERIASGAAQIVIGTHALFQDSVAYANLMLAVVDEQHRFGVHQRLRLTAKGL 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+T+ +P+ R  E++ RL+  +
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTITVPMERTGEIVGRLQSAI 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +EGKKAYWICP +EE +E +  S  ER  +L       I +IHGRMS  +K++ M +FKN
Sbjct: 481 AEGKKAYWICPLVEESEELDLMSAEERHATLVSALGPGIGLIHGRMSGPEKDAAMMAFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L +  + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R DA +++ +DP+LT+ RG +IR LLYL++ +EA +F+RAG
Sbjct: 661 RTDAAYLIERDPELTTERGTAIRTLLYLFRRDEAIRFLRAG 701


>gi|241204637|ref|YP_002975733.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858527|gb|ACS56194.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 701

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/701 (52%), Positives = 492/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K++   +  + R IDLLF+ P S IDR  +P 
Sbjct: 1   MRPAILDPLFSPISGLPGVGPKIADLLVKLLGRESLEDCRVIDLLFHAPFSLIDRRNQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 61  IARAPQGAIVTITARVDRHQVPPGGKSNIPYRVFLHDETGELTLVFFRGQAAWLEKQLPV 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GKI     R  MVHP YI    +  + PL+E +Y L  GLS    +KII   L
Sbjct: 121 DAEVTVSGKIDWFNGRASMVHPDYIVRADETESLPLVEPIYPLTAGLSPKTLRKIIDAGL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            R P LPEW +  L Q++  PSI ++F+++H P    D +  +PAR RLAYDE LAGQ++
Sbjct: 181 PRFPELPEWDDLALTQREGLPSIRDSFHMLHEPHDPGDIDPQAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G P+   G I+ KIL+ +PFS T SQ  AI ++L+DM+   RMLR+LQ
Sbjct: 241 LSLVRQRLRKVAGQPVTATGAISSKILKALPFSLTSSQNEAIAEVLKDMAGNERMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVAL+AMAA +E+GGQAV+MAP  ILA+QH+  I K+  +  + +E++TG  
Sbjct: 301 GDVGSGKTLVALMAMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + LERIA G A I+IGTHALFQDS+ Y  L+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGREREEILERIASGAAQIVIGTHALFQDSVAYANLMLAVVDEQHRFGVHQRLRLTAKGL 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+T+ +P+ R  E++ RL+  +
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTITVPMERTGEIVGRLQSAI 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +EGKKAYWICP +EE +E +  S  ER  +L       I +IHGRMS  +K++ M +FKN
Sbjct: 481 TEGKKAYWICPLVEESEELDLMSAEERHATLVSALGPGIGLIHGRMSGPEKDAAMMAFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L +  + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 601 LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DP+LT+ RG +IR LLYL++ +EA +F+RAG
Sbjct: 661 RKDAAYLIERDPELTTERGAAIRTLLYLFRRDEAIRFLRAG 701


>gi|150396615|ref|YP_001327082.1| ATP-dependent DNA helicase RecG [Sinorhizobium medicae WSM419]
 gi|150028130|gb|ABR60247.1| ATP-dependent DNA helicase RecG [Sinorhizobium medicae WSM419]
          Length = 701

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/701 (51%), Positives = 492/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+PL T  G+G K     ++++      + R +DLLF+ P S IDR  +P 
Sbjct: 1   MRPALLDPLFSPLDTLPGIGPKTGELYARLLGRETIEDCRVVDLLFHAPHSLIDRRRQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+      IVTITG + +H      +   PY++ L+D TGE+ L FF  K   L+     
Sbjct: 61  IAYAPAGSIVTITGRVDRHQPAPSGRSNVPYRVFLHDDTGELALTFFRVKGNWLEKALPV 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
              + V+GK+     R  MVHP Y+   ++  N  L+E VY L  GL+    +K I  A+
Sbjct: 121 DETVIVSGKVDWFNGRASMVHPDYMVRAAESQNMTLVEPVYGLTAGLTSRPLRKSIEAAV 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +R+P LPEW++  LL+++ F S+ E+   +H PR   D +  +PAR RLAYDE LAGQ++
Sbjct: 181 ARVPDLPEWLDGALLRQQGFQSVKESLQRLHEPRDDADIDAQAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G P++  G+++  ++  +PFS T SQ +A+ +ILQDMS  +RMLR+LQ
Sbjct: 241 LSLVRQRLRKVSGTPVHPTGRLSSPVIAALPFSLTSSQSTAVDEILQDMSGTDRMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT VAL+A+ AA+EAGGQAV+MAP  ILA+QH+  + K      I ++++TG  
Sbjct: 301 GDVGSGKTAVALMAILAALEAGGQAVLMAPTEILARQHHATLSKLAAPAGITIDVLTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   LERIA G+  ++IGTHALFQD++ Y  L+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGKERDAVLERIASGETQLVIGTHALFQDAVSYRHLVLAVVDEQHRFGVHQRLRLTAKGV 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+TV IP  R DE++ERL   L
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPNERTDEIVERLDAAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S+GKKAYWICP +EE +E++  S  ER+ SL   F   + ++HGRM+  +K++VM +FK 
Sbjct: 481 SQGKKAYWICPLVEESEETDAMSADERYQSLARRFGKDVGLVHGRMTGPEKDAVMLAFKT 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GDIRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKSP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RLSVL+ TEDGFLIAEEDL+ R EGE+LG +QSG P FLIA  E H  LLE+A
Sbjct: 601 LSEAGRARLSVLRETEDGFLIAEEDLRLRGEGELLGTRQSGTPGFLIASLEAHGDLLEMA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DP+LTS RG ++R+LLYL++ +EA +F+RAG
Sbjct: 661 RKDAAYVIDRDPELTSERGAALRMLLYLFRRDEAIRFLRAG 701


>gi|222148733|ref|YP_002549690.1| ATP-dependent DNA helicase RecG [Agrobacterium vitis S4]
 gi|221735719|gb|ACM36682.1| ATP-dependent DNA helicase RecG [Agrobacterium vitis S4]
          Length = 790

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/701 (52%), Positives = 494/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPS L+PLFA +ST  GVG K +  L+ ++   +A + R +DLLF  P   IDR  +P 
Sbjct: 90  MRPSLLDPLFASVSTLPGVGPKLAQLLASLLGREDAEDARVVDLLFLSPHRLIDRRNQPG 149

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVT+TG + +H+    + R  PY++ L+D TGE+ L FF  K   L+     
Sbjct: 150 IARAPQGAIVTVTGRVDRHTPAPKENRNAPYRVFLHDETGELALTFFRAKGNWLEKALPV 209

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
              ITV+GKI     R  MVHP ++   S+    PL+E VY L  GLS  + KK +  A+
Sbjct: 210 DEIITVSGKIDWFNGRPSMVHPDFMVKASEAATMPLVEPVYPLTAGLSPKVLKKAVDHAV 269

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            RLP   EWI+  L+ K+ F ++  +F  +H+P   KD +  +PAR RLAYDE LAGQ++
Sbjct: 270 ERLPDFAEWIDPALVTKQGFDAVKPSFERLHSPLDEKDVDPQAPARRRLAYDEFLAGQVS 329

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G P+   G+++ KIL  +PF+PT SQ+ A+ DIL+DM   +RMLR++Q
Sbjct: 330 LALVRQRLRKVAGTPVRATGEMSGKILAALPFTPTNSQKDAVADILKDMESDSRMLRLVQ 389

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKTLVAL+AMAA VE GGQAV+MAP  ILA+QH+  + K      I V+++TG  
Sbjct: 390 GDVGAGKTLVALLAMAAVVENGGQAVLMAPTEILARQHHATLSKMAAAAGIAVDVLTGRT 449

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   LERIA GQA I+IGTHALFQDS+ Y+ L+L +VDEQHRFGV QRL+LT K  
Sbjct: 450 KGREREAVLERIASGQAQIVIGTHALFQDSVNYHNLMLAVVDEQHRFGVHQRLRLTAKGV 509

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+TV +P+ RI ++++RL+  +
Sbjct: 510 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTVPVERIGDIVDRLQAAI 569

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + GKKAYWICP +EE +ES   SV ERF  L     + I ++HGRM   +K++ M +FK+
Sbjct: 570 ASGKKAYWICPLVEETEESELMSVEERFEVLKMCLKAPIGLVHGRMKGEEKDAAMLAFKS 629

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG E SSCILLY  P
Sbjct: 630 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGAEASSCILLYKGP 689

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L +    RLS+L+++EDGFLIAEEDLK R EGE+LG +QSG P F IA  E H  LLE+A
Sbjct: 690 LGETGKARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQSGTPGFRIASLEHHADLLEVA 749

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA ++L +DPDLTS RG+++R LLYL++ +EA +F+RAG
Sbjct: 750 RKDAAYLLERDPDLTSARGEAVRTLLYLHRRDEAVRFLRAG 790


>gi|227822022|ref|YP_002825993.1| ATP-dependent DNA helicase RecG [Sinorhizobium fredii NGR234]
 gi|227341022|gb|ACP25240.1| ATP-dependent DNA helicase [Sinorhizobium fredii NGR234]
          Length = 764

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/701 (50%), Positives = 495/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLFAPL +  G+G +     ++++   + ++ R IDL+F+ P S IDR  +P 
Sbjct: 64  MRPALLDPLFAPLDSLPGIGPRTGELYARLLGRESIDDCRVIDLVFHAPHSLIDRRQQPG 123

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTITG + +H      +   PY++ L+D TGE+ L FF  K   L+     
Sbjct: 124 IANAPQGSIVTITGRVDRHQPSPRGRPNVPYRVFLHDDTGELALTFFRVKGNWLEKALPI 183

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
              + V+GK+     R  MVHP Y+   ++  + PL+E VY L  GL++   +K I  A+
Sbjct: 184 DETVIVSGKVDWFNGRASMVHPDYMVRAAEAESLPLVEPVYGLTAGLTLRPLRKSIEAAV 243

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +R+P LPEW+++ L +++ F S  E F+ +H PR   D    +PAR RLAYDE LAGQ++
Sbjct: 244 ARVPDLPEWLDQTLQRQQGFASARECFHRLHEPRDETDIAPQAPARRRLAYDEFLAGQLS 303

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G P++  GK++  ++  +PFS T SQ +A+ DIL DMS   RMLR+LQ
Sbjct: 304 LSLVRQRLRKVAGTPVHATGKLSGPVIAALPFSLTASQSAAVGDILADMSGTERMLRLLQ 363

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT +AL++M AA+E+GGQAV+MAP  ILA+QH+  ++K      + ++++TG  
Sbjct: 364 GDVGSGKTAIALMSMLAAIESGGQAVLMAPTEILARQHHATLQKMAAPAGVTIDVLTGRT 423

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   LERIA G+  ++IGTHALFQD++ Y +L+L +VDEQHRFGV QRL+LT K  
Sbjct: 424 KGKERDAILERIASGETQMVIGTHALFQDAVNYRQLVLAVVDEQHRFGVHQRLRLTAKGI 483

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+TV +P  R DE+++RL   L
Sbjct: 484 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTVPTERTDEIVDRLDAAL 543

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           S+GKKAYWICP +EE +E++  S  ER+  L + F   + ++HGRM   +K++VM +FKN
Sbjct: 544 SQGKKAYWICPLVEESEETDTMSADERYQRLVQRFGQDVGLVHGRMPGPEKDAVMLAFKN 603

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 604 GEIRVLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 663

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RLS+L+ TEDGF+IAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 664 LSEAGRARLSILRETEDGFVIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 723

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DPDLT+ RGQ++R LLYL++ +EA +F+RAG
Sbjct: 724 RKDAAYLIERDPDLTTERGQALRTLLYLHRRDEAIRFLRAG 764


>gi|163760202|ref|ZP_02167285.1| ATP-dependent DNA helicase [Hoeflea phototrophica DFL-43]
 gi|162282601|gb|EDQ32889.1| ATP-dependent DNA helicase [Hoeflea phototrophica DFL-43]
          Length = 705

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/705 (52%), Positives = 483/705 (68%), Gaps = 5/705 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L+PLF P+ +  G+G K +  L+++       +TR +DLL   P S IDR  R  
Sbjct: 1   MRPLELDPLFVPVESLPGIGPKSAEALARVTGRDGPEDTRALDLLLLPPHSMIDRTMRAG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+E  E  I T+   + +H      +R  PY++ ++D TGE+ L FF+ K   L+ +   
Sbjct: 61  ITEAPEGTIATLKVRVDRHQPSPPGRRSVPYRVYVHDDTGEMALTFFHSKQAWLEKILPV 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G  + V+GK++    R  MVHP +I   +     PLIE VY L  GLS  L ++ I  A+
Sbjct: 121 GETVLVSGKVEWFNGRPSMVHPDHIVAEADAHTLPLIEPVYPLTAGLSPKLLRRSIEAAI 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             +PVLPEW +  L+ +  FP +A+A   +H+P  A D E  +PAR RLAYDELLAGQ++
Sbjct: 181 ELMPVLPEWADPHLVAQNGFPDVADAIRQLHHPESAMDLEPQTPARRRLAYDELLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R+  +K  G P+N EG++ + +L  +PFS T SQ +A+ +IL DM+  +RMLR+LQ
Sbjct: 241 LALVRQTLRKLPGYPVNAEGRVRKAVLDALPFSLTGSQTTAVDEILADMAGSDRMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT VA++AMA AVEAGGQAV+MAP  ILA+QH+  I+K      I V ++T   
Sbjct: 301 GDVGSGKTAVAMLAMADAVEAGGQAVLMAPTEILARQHFATIEKMAAAAGIEVVVLTARA 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + LERIA G+A II+GTHALFQDS+ Y  L L +VDEQHRFGV QRL+LT K T
Sbjct: 361 KGRERTELLERIASGEAQIIVGTHALFQDSVVYNNLTLAVVDEQHRFGVHQRLRLTAKGT 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           APH+L+MTATPIPRTLVL + GD+D+SK+TEKP GR+PI TV IP  R+ ++IERL+  L
Sbjct: 421 APHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPVGRQPITTVTIPDERLGDIIERLRAAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHE----HFTSSIAIIHGRMSDIDKESVMD 535
            +GKKAYWICP +E+  ES+  SV  R  SL E     F   IA++HGRMS  DK+  M 
Sbjct: 481 RDGKKAYWICPLVEDSDESDLMSVESRHASLVEAFGREFADQIALVHGRMSSDDKDHAMS 540

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK+G  +LL+ATTVIEVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRGE  SSCILL
Sbjct: 541 AFKSGQTRLLVATTVIEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGEGASSCILL 600

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YH PL + +  RLSVL+ TEDGF IAEEDLK R EGE+LG +QSGMP F +A    H  L
Sbjct: 601 YHGPLGETAGARLSVLRETEDGFRIAEEDLKLRGEGEVLGTRQSGMPGFRLANLSAHADL 660

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           LEIAR DA+++L  DP L + RG ++R+LLYL + +EA +F+RAG
Sbjct: 661 LEIARSDARNVLESDPGLATPRGAALRMLLYLMRRDEAIRFLRAG 705


>gi|306841771|ref|ZP_07474457.1| ATP-dependent DNA helicase RecG [Brucella sp. BO2]
 gi|306288176|gb|EFM59563.1| ATP-dependent DNA helicase RecG [Brucella sp. BO2]
          Length = 714

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 13  MRPSLLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSVIDRRNRP 72

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH      +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 73  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 132

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 133 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 192

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 193 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 252

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 253 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 312

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 313 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 372

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 373 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 432

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 433 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 492

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SEG+K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 493 VSEGQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 552

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 553 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 612

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 613 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 672

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 673 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 714


>gi|256015357|ref|YP_003105366.1| ATP-dependent DNA helicase RecG [Brucella microti CCM 4915]
 gi|255998017|gb|ACU49704.1| ATP-dependent DNA helicase RecG [Brucella microti CCM 4915]
          Length = 706

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH      +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SEG+K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEGQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706


>gi|306845912|ref|ZP_07478480.1| ATP-dependent DNA helicase RecG [Brucella sp. BO1]
 gi|306273804|gb|EFM55642.1| ATP-dependent DNA helicase RecG [Brucella sp. BO1]
          Length = 706

 Score =  717 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH      +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +S+G+K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSDGQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 EGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706


>gi|254720432|ref|ZP_05182243.1| ATP-dependent DNA helicase RecG [Brucella sp. 83/13]
 gi|265985452|ref|ZP_06098187.1| ATP-dependent DNA helicase RecG [Brucella sp. 83/13]
 gi|306838991|ref|ZP_07471812.1| ATP-dependent DNA helicase RecG [Brucella sp. NF 2653]
 gi|264664044|gb|EEZ34305.1| ATP-dependent DNA helicase RecG [Brucella sp. 83/13]
 gi|306405897|gb|EFM62155.1| ATP-dependent DNA helicase RecG [Brucella sp. NF 2653]
          Length = 706

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/702 (49%), Positives = 468/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH      +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTHGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R +P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRQLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L+AMA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLAMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGCERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SEG+K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEGQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706


>gi|254698844|ref|ZP_05160672.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260763325|ref|ZP_05875657.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260673746|gb|EEX60567.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 706

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/702 (48%), Positives = 468/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH      +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  NEA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRNEAIRLLRAG 706


>gi|23500325|ref|NP_699765.1| ATP-dependent DNA helicase RecG [Brucella suis 1330]
 gi|62317562|ref|YP_223415.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 1 str. 9-941]
 gi|83269543|ref|YP_418834.1| ATP-dependent DNA helicase RecG [Brucella melitensis biovar Abortus
           2308]
 gi|161620643|ref|YP_001594529.1| ATP-dependent DNA helicase RecG [Brucella canis ATCC 23365]
 gi|189022816|ref|YP_001932557.1| ATP-dependent DNA helicase RecG [Brucella abortus S19]
 gi|225686367|ref|YP_002734339.1| ATP-dependent DNA helicase RecG [Brucella melitensis ATCC 23457]
 gi|254691059|ref|ZP_05154313.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 6 str. 870]
 gi|254695635|ref|ZP_05157463.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 3 str. Tulya]
 gi|254702956|ref|ZP_05164784.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 3 str. 686]
 gi|254732291|ref|ZP_05190869.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 4 str. 292]
 gi|256043476|ref|ZP_05446405.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256059226|ref|ZP_05449432.1| ATP-dependent DNA helicase RecG [Brucella neotomae 5K33]
 gi|256111502|ref|ZP_05452516.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 3 str.
           Ether]
 gi|256256244|ref|ZP_05461780.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 9 str. C68]
 gi|256262492|ref|ZP_05465024.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 2 str.
           63/9]
 gi|260544799|ref|ZP_05820620.1| ATP-dependent DNA helicase RecG [Brucella abortus NCTC 8038]
 gi|260564672|ref|ZP_05835157.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 1 str.
           16M]
 gi|260568132|ref|ZP_05838601.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 4 str. 40]
 gi|260756656|ref|ZP_05869004.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 6 str. 870]
 gi|260760087|ref|ZP_05872435.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 4 str. 292]
 gi|260882473|ref|ZP_05894087.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 9 str. C68]
 gi|261216033|ref|ZP_05930314.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 3 str. Tulya]
 gi|261323176|ref|ZP_05962373.1| ATP-dependent DNA helicase RecG [Brucella neotomae 5K33]
 gi|261753563|ref|ZP_05997272.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 3 str. 686]
 gi|265989894|ref|ZP_06102451.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993000|ref|ZP_06105557.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 3 str.
           Ether]
 gi|297249602|ref|ZP_06933303.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 5 str. B3196]
 gi|23463938|gb|AAN33770.1| ATP-dependent DNA helicase RecG [Brucella suis 1330]
 gi|62197755|gb|AAX76054.1| RecG, ATP-dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82939817|emb|CAJ12825.1| DEAD/DEAH box helicase:RecA bacterial DNA recombination
           protein:Helicase, C-terminal:ATP/GTP-binding site motif
           A (P-loop):Ha [Brucella melitensis biovar Abortus 2308]
 gi|161337454|gb|ABX63758.1| ATP-dependent DNA helicase RecG [Brucella canis ATCC 23365]
 gi|189021390|gb|ACD74111.1| ATP-dependent DNA helicase RecG [Brucella abortus S19]
 gi|225642472|gb|ACO02385.1| ATP-dependent DNA helicase RecG [Brucella melitensis ATCC 23457]
 gi|260098070|gb|EEW81944.1| ATP-dependent DNA helicase RecG [Brucella abortus NCTC 8038]
 gi|260152315|gb|EEW87408.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 1 str.
           16M]
 gi|260154797|gb|EEW89878.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 4 str. 40]
 gi|260670405|gb|EEX57345.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 4 str. 292]
 gi|260676764|gb|EEX63585.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 6 str. 870]
 gi|260872001|gb|EEX79070.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 9 str. C68]
 gi|260917640|gb|EEX84501.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 3 str. Tulya]
 gi|261299156|gb|EEY02653.1| ATP-dependent DNA helicase RecG [Brucella neotomae 5K33]
 gi|261743316|gb|EEY31242.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 3 str. 686]
 gi|262763870|gb|EEZ09902.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000563|gb|EEZ13253.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092229|gb|EEZ16526.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 2 str.
           63/9]
 gi|297173471|gb|EFH32835.1| ATP-dependent DNA helicase RecG [Brucella abortus bv. 5 str. B3196]
 gi|326410738|gb|ADZ67802.1| ATP-dependent DNA helicase RecG [Brucella melitensis M28]
 gi|326554031|gb|ADZ88670.1| ATP-dependent DNA helicase RecG [Brucella melitensis M5-90]
          Length = 706

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/702 (48%), Positives = 468/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH      +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706


>gi|17989031|ref|NP_541664.1| ATP-dependent DNA helicase RecG [Brucella melitensis bv. 1 str.
           16M]
 gi|237817109|ref|ZP_04596101.1| ATP-dependent DNA helicase RecG [Brucella abortus str. 2308 A]
 gi|17984872|gb|AAL53928.1| ATP-dependent DNA helicase recg [Brucella melitensis bv. 1 str.
           16M]
 gi|237787922|gb|EEP62138.1| ATP-dependent DNA helicase RecG [Brucella abortus str. 2308 A]
          Length = 714

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/702 (48%), Positives = 468/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 13  MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 72

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH      +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 73  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 132

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 133 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 192

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 193 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 252

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 253 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 312

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 313 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 372

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 373 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 432

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 433 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 492

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 493 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 552

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 553 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 612

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 613 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 672

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 673 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 714


>gi|163844733|ref|YP_001622388.1| ATP-dependent DNA helicase RecG [Brucella suis ATCC 23445]
 gi|163675456|gb|ABY39566.1| ATP-dependent DNA helicase RecG [Brucella suis ATCC 23445]
          Length = 706

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/702 (48%), Positives = 467/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH      +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+  ++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGGLVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706


>gi|254711150|ref|ZP_05172961.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis B2/94]
 gi|256029531|ref|ZP_05443145.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis M292/94/1]
 gi|256157726|ref|ZP_05455644.1| ATP-dependent DNA helicase RecG [Brucella ceti M490/95/1]
 gi|256253303|ref|ZP_05458839.1| ATP-dependent DNA helicase RecG [Brucella ceti B1/94]
 gi|260167379|ref|ZP_05754190.1| ATP-dependent DNA helicase RecG [Brucella sp. F5/99]
 gi|261220417|ref|ZP_05934698.1| ATP-dependent DNA helicase RecG [Brucella ceti B1/94]
 gi|261318742|ref|ZP_05957939.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis B2/94]
 gi|261756787|ref|ZP_06000496.1| ATP-dependent DNA helicase RecG [Brucella sp. F5/99]
 gi|265986540|ref|ZP_06099097.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis M292/94/1]
 gi|265996232|ref|ZP_06108789.1| ATP-dependent DNA helicase RecG [Brucella ceti M490/95/1]
 gi|260919001|gb|EEX85654.1| ATP-dependent DNA helicase RecG [Brucella ceti B1/94]
 gi|261297965|gb|EEY01462.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis B2/94]
 gi|261736771|gb|EEY24767.1| ATP-dependent DNA helicase RecG [Brucella sp. F5/99]
 gi|262550529|gb|EEZ06690.1| ATP-dependent DNA helicase RecG [Brucella ceti M490/95/1]
 gi|264658737|gb|EEZ28998.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis M292/94/1]
          Length = 706

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/702 (48%), Positives = 467/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH      +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL   +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLLGRDEAIRLLRAG 706


>gi|254712392|ref|ZP_05174203.1| ATP-dependent DNA helicase RecG [Brucella ceti M644/93/1]
 gi|254715464|ref|ZP_05177275.1| ATP-dependent DNA helicase RecG [Brucella ceti M13/05/1]
 gi|261217197|ref|ZP_05931478.1| ATP-dependent DNA helicase RecG [Brucella ceti M13/05/1]
 gi|261320068|ref|ZP_05959265.1| ATP-dependent DNA helicase RecG [Brucella ceti M644/93/1]
 gi|260922286|gb|EEX88854.1| ATP-dependent DNA helicase RecG [Brucella ceti M13/05/1]
 gi|261292758|gb|EEX96254.1| ATP-dependent DNA helicase RecG [Brucella ceti M644/93/1]
          Length = 706

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/702 (48%), Positives = 467/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH      +   P+++  +D TGE+ L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGELALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL   +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLLGRDEAIRLLRAG 706


>gi|325293166|ref|YP_004279030.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3]
 gi|325061019|gb|ADY64710.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3]
          Length = 704

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/701 (54%), Positives = 506/701 (72%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLFA +ST  GVG K +  L+K+++  NA++TR IDLLF+ PS+ IDR  RP 
Sbjct: 4   MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRENADDTRVIDLLFHAPSNVIDRRNRPG 63

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+  +   IVTI G + +H       R  PY++ L+D TGE+ L FF  K + L      
Sbjct: 64  IALAAPGAIVTIQGRVDRHQPAPPGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPV 123

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++ V+GK+     R  MVHP ++   S+  N PL+EAVY +  GLS  + ++ I   L
Sbjct: 124 DEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAVYPMTAGLSPKVLRRAIEGGL 183

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           S+LPV PEWI++ L  ++ F  +A +F  +H+PR + D +  +PAR RLAYDE LAGQ++
Sbjct: 184 SKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS 243

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G PI  +G IA KIL  +PFS T SQ +++KDIL DM+ ++RMLR+LQ
Sbjct: 244 LALVRQRLRKVAGQPIRAKGDIAAKILSQLPFSLTPSQNASVKDILTDMASEDRMLRLLQ 303

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKTLVAL+AMA AVEAGGQAV+MAP  ILA+QH+  I K      I VE++TG  
Sbjct: 304 GDVGAGKTLVALMAMATAVEAGGQAVLMAPTEILARQHFATISKLANAAGITVEVLTGRT 363

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+  ER+A G+A I+IGTHALFQDS+ Y  L+L +VDEQHRFGV QRL+LT K  
Sbjct: 364 KGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAVVDEQHRFGVHQRLRLTAKGI 423

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+TV IP  RI +++ERL+  L
Sbjct: 424 TPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL 483

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            EGKKAYWICP +EE +ES+  S  ER   L +   ++I +IHGRMS  +K++ M +FKN
Sbjct: 484 KEGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMSGPEKDAAMLAFKN 543

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 544 GGTRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 603

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+N   RLS+L+++EDGFLIAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 604 LSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 663

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DP+LT  RG+S+R LLYL++ +EA +F+ AG
Sbjct: 664 RKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG 704


>gi|294853622|ref|ZP_06794294.1| ATP-dependent DNA helicase RecG [Brucella sp. NVSL 07-0026]
 gi|294819277|gb|EFG36277.1| ATP-dependent DNA helicase RecG [Brucella sp. NVSL 07-0026]
          Length = 706

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/702 (48%), Positives = 467/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH      +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L   LS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTASLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALSLVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706


>gi|254699818|ref|ZP_05161646.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 5 str. 513]
 gi|261750290|ref|ZP_05993999.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 5 str. 513]
 gi|261740043|gb|EEY27969.1| ATP-dependent DNA helicase RecG [Brucella suis bv. 5 str. 513]
          Length = 706

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/702 (48%), Positives = 467/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH      +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L   LS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTADLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706


>gi|254705926|ref|ZP_05167754.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis M163/99/10]
 gi|261313354|ref|ZP_05952551.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis M163/99/10]
 gi|261302380|gb|EEY05877.1| ATP-dependent DNA helicase RecG [Brucella pinnipedialis M163/99/10]
          Length = 706

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/702 (48%), Positives = 466/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH      +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  E F SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEEHFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL   +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLLGRDEAIRLLRAG 706


>gi|15965406|ref|NP_385759.1| ATP-dependent DNA helicase protein [Sinorhizobium meliloti 1021]
 gi|307308797|ref|ZP_07588493.1| ATP-dependent DNA helicase RecG [Sinorhizobium meliloti BL225C]
 gi|307317270|ref|ZP_07596711.1| ATP-dependent DNA helicase RecG [Sinorhizobium meliloti AK83]
 gi|15074587|emb|CAC46232.1| Probable ATP-dependent DNA helicase [Sinorhizobium meliloti 1021]
 gi|306897358|gb|EFN28103.1| ATP-dependent DNA helicase RecG [Sinorhizobium meliloti AK83]
 gi|306900803|gb|EFN31414.1| ATP-dependent DNA helicase RecG [Sinorhizobium meliloti BL225C]
          Length = 701

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/701 (51%), Positives = 494/701 (70%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+PL T  G+G K     ++++      + R +DLLF+ P S IDR  +P 
Sbjct: 1   MRPALLDPLFSPLDTLPGIGPKTGELYARLLGRETVEDCRVVDLLFHIPHSLIDRRRQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+      IVTITG + +H      +   PY++ L+D TGE+ L FF  +   L+     
Sbjct: 61  IAHAPNGAIVTITGRVDRHQPAPSGRSNVPYRVFLHDETGELALTFFRVRGNWLEKALPI 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
              + V+GK+     R  MVHP Y+   ++  N PL+E VY L  GL+    +K I  A+
Sbjct: 121 DETVIVSGKVDWFNRRASMVHPDYMVRAAESENMPLVEPVYGLTAGLTSRPLRKSIEAAV 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +R+P LPEW+++ LL+++ F S  E+F  +H PR   D +  +PAR R+AYDE LAGQ++
Sbjct: 181 ARVPDLPEWLDEALLRQQGFKSAKESFQRLHEPRDETDIDAQAPARRRIAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G PI+  G+++  ++  +PFS T SQ +A+ +IL DMS  +RMLR+LQ
Sbjct: 241 LSLVRQRLRKVAGTPIHPTGRLSGPVIAALPFSLTNSQSAAVDEILADMSGADRMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT VAL+AM AAVE+GGQAV+MAP  ILA+QH+  + +      I ++I+TG  
Sbjct: 301 GDVGSGKTAVALMAMLAAVESGGQAVLMAPTEILARQHHATLSRMAAPAGITIDILTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   LERIA G+  ++IGTHALFQD++ Y +L+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGKERDAILERIASGETQLVIGTHALFQDAVIYRQLVLAVVDEQHRFGVHQRLRLTAKGI 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+TV IP  R DE++ERL   L
Sbjct: 421 SPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPNERTDEIVERLDAAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +GKKAYWICP +EE +E++  S  ER+ SL   F   + ++HGRM+  +K++VM +FKN
Sbjct: 481 RQGKKAYWICPLVEESEETDAMSADERYQSLARRFGKDVGLVHGRMAGPEKDAVMLAFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GEIRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKSP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RLSVL+ +EDGFLIAEEDLK R EGE+LG +QSG P FLIA  E H  LLE+A
Sbjct: 601 LSEAGRARLSVLRESEDGFLIAEEDLKLRGEGELLGTRQSGTPGFLIASLEAHADLLEMA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DP+LTS RGQ++R LLYL++ +EA +F+RAG
Sbjct: 661 RKDAAYVIDRDPELTSERGQALRTLLYLFRRDEAIRFLRAG 701


>gi|148558658|ref|YP_001257569.1| ATP-dependent DNA helicase RecG [Brucella ovis ATCC 25840]
 gi|148369943|gb|ABQ62815.1| ATP-dependent DNA helicase RecG [Brucella ovis ATCC 25840]
          Length = 706

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/702 (48%), Positives = 467/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + Q       +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIAFAQEGAIVTLEVIVDQRQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 185 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 665 ARKDARYILASDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706


>gi|225629077|ref|ZP_03787110.1| ATP-dependent DNA helicase RecG [Brucella ceti str. Cudo]
 gi|225615573|gb|EEH12622.1| ATP-dependent DNA helicase RecG [Brucella ceti str. Cudo]
          Length = 714

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/702 (48%), Positives = 467/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K ++ L K++       E +   LLF  P S IDR  RP
Sbjct: 13  MRPSMLDPFFASVRSLSGIGPKVAVLLGKLLGTDVPGGEPKIGQLLFLPPHSIIDRRNRP 72

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH      +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 73  GIAFAQEGAIVTLEVTVDQHQPAPKGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 132

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       + PL+E VY L  GLS     + I EA
Sbjct: 133 EGETVIVSGKVEWFNGRASMVHPDYIASMDDAASLPLVEPVYPLTAGLSPKTLGRAIKEA 192

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+PVLPEWI+  LL ++ FP+  +A N +H P    D    S  R RLAYDE LAGQ+
Sbjct: 193 LTRVPVLPEWIDAPLLAREGFPAFQQALNTLHQPEDPGDIALESITRRRLAYDEFLAGQL 252

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G I  +I+R++P+  TK+QE A+++I+ D+    RMLR+L
Sbjct: 253 ALALVRAKTRRLSGRPLEGTGNIVAEIMRHLPYRLTKAQEQAVREIITDLKSPQRMLRLL 312

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 313 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGR 372

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+ VI+DEQHRFGV QRL LT K 
Sbjct: 373 EKGRERNAVLEGLKSGEIDIVIGTHALFQEKVEYHDLVFVIIDEQHRFGVHQRLMLTAKG 432

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKP GR+PI T I+P+ R+ E++ER++  
Sbjct: 433 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPVGRQPITTAIVPMERMGELVERIRKA 492

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +SE +K YWICP +EE +     S  ERF SL   F   I +IHGRMS  +K+  M +FK
Sbjct: 493 VSEDQKIYWICPLVEESEVVELTSAEERFESLKSVFGERIGLIHGRMSGAEKDEAMRAFK 552

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 553 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 612

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 613 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 672

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++IL  DPDL S RGQ++R+LLYL   +EA + +RAG
Sbjct: 673 ARKDARYILASDPDLESERGQALRVLLYLLGRDEAIRLLRAG 714


>gi|159184915|ref|NP_354765.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58]
 gi|159140194|gb|AAK87550.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 701

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/701 (53%), Positives = 506/701 (72%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLFA +ST  GVG K +  L+K+++  +A++TR IDLLF+ PS+ IDR  RP 
Sbjct: 1   MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRESADDTRVIDLLFHAPSNVIDRRNRPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+  +   IVTI G + +H       R  PY++ L+D TGE+ L FF  K + L      
Sbjct: 61  IALAAPGAIVTIQGRVDRHQPPPAGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPV 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++ V+GK+     R  MVHP ++   S+  N PL+EAVY +  GLS  + ++ I   L
Sbjct: 121 DEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAVYPMTAGLSPKVLRRAIEGGL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           S+LPV PEWI++ L  ++ F  +A +F  +H+PR + D +  +PAR RLAYDE LAGQ++
Sbjct: 181 SKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R++ +K  G PI   G IA KIL  +PFS T SQ +A+KDIL DM+ ++RMLR+LQ
Sbjct: 241 LALVRQRLRKVAGQPIRARGDIAAKILSQLPFSLTASQSAAVKDILTDMAGEDRMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKTLVAL+AMA AVEAGGQAV+MAP  ILA+QH+  I K  +   + VE++TG  
Sbjct: 301 GDVGAGKTLVALMAMATAVEAGGQAVLMAPTEILARQHFATISKLAKAVGLTVEVLTGRT 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+  ER+A G+A I+IGTHALFQDS+ Y  L+L +VDEQHRFGV QRL+LT K  
Sbjct: 361 KGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAVVDEQHRFGVHQRLRLTAKGI 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH+L+MTATPIPRTLVL + GD+D+SK+TEKPAGRKPI+TV IP  RI +++ERL+  L
Sbjct: 421 TPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +GKKAYWICP +EE +ES+  S  ER   L +   ++I +IHGRM+  +K++ M +FK+
Sbjct: 481 KDGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMNGPEKDAAMLAFKS 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CILLY  P
Sbjct: 541 GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+N   RLS+L+++EDGFLIAEEDLK R EGE+LG +QSG P F IA  E H  LLEIA
Sbjct: 601 LSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA +++ +DP+LT  RG+S+R LLYL++ +EA +F+ AG
Sbjct: 661 RKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG 701


>gi|153010963|ref|YP_001372177.1| ATP-dependent DNA helicase RecG [Ochrobactrum anthropi ATCC 49188]
 gi|151562851|gb|ABS16348.1| ATP-dependent DNA helicase RecG [Ochrobactrum anthropi ATCC 49188]
          Length = 706

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/702 (48%), Positives = 469/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNAN-ETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+P FA + +  G+G K +  L K++       E +   LLF  P S IDR  RP
Sbjct: 5   MRPSMLDPFFASVRSLSGIGPKVAALLGKLLGTDIPGAEPKVGQLLFLAPHSVIDRRNRP 64

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E  IVT+   + QH      +   P+++  +D TGEI L FF+ +   L+ +  
Sbjct: 65  GIALAQEGAIVTLEVIVDQHQPAPPGRGNVPHRVFAHDDTGEIALTFFHAQLPWLQKMLP 124

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+GK++    R  MVHP YI       N P++E VY L  GLS     + + EA
Sbjct: 125 EGETVIVSGKVEWFNGRASMVHPDYIASLEDAANLPMVEPVYPLTAGLSPKTLARAVKEA 184

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+P L EWI+  LL ++ F S  ++ N +H P    D    S +R RLAYDE LAGQ+
Sbjct: 185 LTRVPPLQEWIDGPLLARERFTSFQQSLNTLHLPEDPSDIALESISRRRLAYDEFLAGQL 244

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + ++  G P+   G+I  +I+R++P+  T+ Q+ A+++I+ D+    RMLR+L
Sbjct: 245 ALALVRAKTRRLSGRPLEGTGRIVAEIMRHLPYRLTEGQDQAVREIITDLKSPERMLRLL 304

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 305 QGDVGSGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKTALLTGR 364

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LE +  G+  I+IGTHALFQ+ ++Y+ L+LVI+DEQHRFGV QRL LT K 
Sbjct: 365 EKGRDRNAVLEGLKTGEIDIVIGTHALFQEKVEYHDLVLVIIDEQHRFGVHQRLMLTAKG 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKPAGR+PI T I+P+ R+ E++ER++  
Sbjct: 425 SAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPITTAIVPMERMGELVERIRKA 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++EG+K YWICP +EE +     S  ERF +L   F   I +IHGRMS  +K+  M +FK
Sbjct: 485 VAEGQKIYWICPLVEESEVVELTSAEERFENLKPVFGDRIGLIHGRMSGAEKDEAMRAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  
Sbjct: 545 QGETRLLVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKG 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEI
Sbjct: 605 PLGEIAQARLKVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRLASIEAHGDLLEI 664

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA++ILT DPDL S RGQ++R+LLYL+  +EA + +RAG
Sbjct: 665 ARKDARYILTSDPDLESERGQALRVLLYLFGRDEAIRLLRAG 706


>gi|260463947|ref|ZP_05812143.1| ATP-dependent DNA helicase RecG [Mesorhizobium opportunistum
           WSM2075]
 gi|259030322|gb|EEW31602.1| ATP-dependent DNA helicase RecG [Mesorhizobium opportunistum
           WSM2075]
          Length = 702

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/702 (48%), Positives = 472/702 (67%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNAN-ETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+PLF P+++  GVG K    + K++     +   R  DLLF  P + IDR  RP
Sbjct: 1   MRPSILDPLFVPITSLAGVGPKVGALIEKVVAADLGDRAARAGDLLFVLPHTVIDRRNRP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+  +E  IVT+   I +H       R  PY++  +D TGEI L FF+     L+    
Sbjct: 61  GIALAAEGAIVTLEVRIDRHQPPPRGNRSVPYRVFAHDDTGEIGLTFFHAHASYLEKAMP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G  + V+G+++    R  MVHP +I   S+  N PL+E VY L  GLS  + ++ I +A
Sbjct: 121 VGEHVVVSGRMEWFNGRPTMVHPDHIALASEAENLPLVEPVYPLTAGLSGKVLRRAIGQA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+RLP LPEW +  L+++ +FP+  +A   IHNP    D      A  RLAYDELLAGQ+
Sbjct: 181 LARLPELPEWQDGALMRRHTFPTFGDALARIHNPADPIDVSIDGAAWRRLAYDELLAGQV 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +L L+R + ++  G P+  +G I +K+   +P+S T SQE A+ +I  D++   RMLR+L
Sbjct: 241 SLALVRAKIRRLSGRPLVGDGSIVEKLRAALPYSLTASQEFALAEINADLADPERMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL+AMA AVEAGGQA +MAP  ILA+QH   I     +  + + I+TG 
Sbjct: 301 QGDVGSGKTVVALLAMARAVEAGGQAALMAPTEILARQHLATIAPLADSIGLRIAILTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L  +A G+  I++GTHALFQ+++ +  L+L ++DEQHRFGV QRL +T K 
Sbjct: 361 EKGRERADTLAGLASGEIDIVVGTHALFQETVTFDDLVLAVIDEQHRFGVHQRLAITAKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKPAGR+PI+TV +P+ R+DE++ R++  
Sbjct: 421 DAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPIRTVTLPLERLDELVGRMEDA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++ G+K YWICP +EE +E    S  +RF SL   F   I ++HGRM   +K+  M +FK
Sbjct: 481 VAGGQKIYWICPLVEESEEIKLMSAEDRFASLKPLFGDRIGLVHGRMKGAEKDEAMRAFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++LIATTVIEVG+DV DA++++IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY  
Sbjct: 541 QGETRILIATTVIEVGVDVPDATVMVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKD 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RLSV++ TEDGFLIAEEDLK R EGE+LG +QSG P F +A+ E H  LLE 
Sbjct: 601 PLGETAKRRLSVMRETEDGFLIAEEDLKLRGEGELLGTRQSGTPGFQVARIEAHADLLEA 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR DA+ IL++DP+L S RG+++R+LLYL+  +EA + +RAG
Sbjct: 661 ARDDARLILSRDPELQSDRGEALRLLLYLFGRDEAVRLLRAG 702


>gi|13470981|ref|NP_102550.1| ATP-dependent DNA helicase RecG [Mesorhizobium loti MAFF303099]
 gi|14021724|dbj|BAB48336.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099]
          Length = 702

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/702 (48%), Positives = 476/702 (67%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNAN-ETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+PLF P+++  GVG K    + K++     +   R  DLLF  P + IDR  RP
Sbjct: 1   MRPSILDPLFVPITSLAGVGPKVGALIEKVVTADLGDRAARAGDLLFVLPHTVIDRRSRP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+  +E +IVT+   I +H       R  PY++  +D TGEI L FF+     L+    
Sbjct: 61  GIAGSAEGQIVTLDVRIDRHQPPPRGNRSVPYRVYAHDDTGEIGLTFFHAHAAYLEKAMP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G  + V+G+++    R  MVHP +I   S+  N PL+E VY L  GLS  + ++ I +A
Sbjct: 121 VGEHVVVSGRMEWFNGRPTMVHPDHIALASEAENLPLVEPVYPLTAGLSGKVLRRAIGQA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+RLP LPEW +   +++ +FP+ A+A   IHNP    D      A  RLAYDELLAGQ+
Sbjct: 181 LARLPELPEWQDVAFMRRHTFPTFADALTRIHNPADPIDVSIEGAAWRRLAYDELLAGQV 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +L L+R + ++  G P+  +G+I +K+   +P+S T SQE A+ +I  D++   RMLR+L
Sbjct: 241 SLALVRAKIRRLSGRPLVGDGRIVEKLRAALPYSLTASQEFALAEINADLADPERMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL+AMA AVEAGGQA +MAP  ILA+QH   I  +     + + I+TG 
Sbjct: 301 QGDVGSGKTVVALLAMARAVEAGGQAALMAPTEILARQHLATIAPFAAKVGLRIAILTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R + L  +A G+  I++GTHALFQ+++ ++ L+L ++DEQHRFGV QRL +T K 
Sbjct: 361 EKGRERTETLAGLASGEIDIVVGTHALFQETVTFHDLVLAVIDEQHRFGVHQRLAITAKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKPAGR+PI+TV +P+ R+DE++ R++  
Sbjct: 421 DAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPIRTVTLPLERLDELVARMQDA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++ G+K YWICP +EE +E    S  +RF SL   F   I ++HGRM   +K+  M +FK
Sbjct: 481 VAGGQKIYWICPLVEESEEIKLMSAEDRFASLKPLFGDRIGLVHGRMKGAEKDEAMRAFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++LIATTVIEVG+DV DA++++IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY  
Sbjct: 541 EGETRILIATTVIEVGVDVPDATVMVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKD 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RLSV++ TEDGFLIAEEDLK R EGE+LG +QSG P F +A+ E H  LLE 
Sbjct: 601 PLGETAKRRLSVMRETEDGFLIAEEDLKLRGEGELLGTRQSGTPGFQVARIEAHADLLEA 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR DA+ IL++DP+L S RG+++R+LLYL+  +EA + +RAG
Sbjct: 661 ARDDARLILSRDPELQSDRGEALRLLLYLFGRDEAVRLLRAG 702


>gi|328543943|ref|YP_004304052.1| ATP-dependent DNA helicase RecG [polymorphum gilvum SL003B-26A1]
 gi|326413687|gb|ADZ70750.1| ATP-dependent DNA helicase RecG [Polymorphum gilvum SL003B-26A1]
          Length = 700

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/700 (45%), Positives = 457/700 (65%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPS L+PLFAP+S   GVG K +   + ++      E    DLLF+ P S IDR  RP 
Sbjct: 1   MRPSVLDPLFAPVSVLPGVGPKIARLFATLLADTPGREPTVADLLFHLPHSVIDRRKRPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           ++      +VT+   + +H       + PY++L +D TG I L+FF+ + + L+ V  EG
Sbjct: 61  VARCENGDVVTLDLVVERHLPSPRHGKAPYRVLASDATGTIALVFFHPRRDWLETVLPEG 120

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            +  V+GK++    R  MVHP YI    +      +E VY +  GL+    +K ++ AL 
Sbjct: 121 ARRIVSGKVEWFSERPQMVHPDYILTAEEAEAMRAVEPVYPMTAGLAPKTLQKAVLGALE 180

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           RLP+LPEW++     ++ +P   +A    H PR+A D   T     RLAYDE LA Q+AL
Sbjct: 181 RLPLLPEWLDPAFKARQGWPDFDQALRFAHRPREANDLVPTGATLRRLAYDEYLANQLAL 240

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R   ++  G     +G++  +IL  +P++ T  Q+ A+++I  D+   +RMLR+LQG
Sbjct: 241 ALVRANMRQLGGEARRPDGRLTARILAALPYALTAGQQQAVREIEADLRSPHRMLRLLQG 300

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG+GKT+VAL+AMAA +E G QAV+MAP  ILA+QH+  ++   +   I + ++TG   
Sbjct: 301 DVGAGKTVVALLAMAAVIETGAQAVLMAPTEILARQHFASMEPLCRAAGIRIAVLTGRDS 360

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR   + +  G   +++GTHALFQ S+ +  L + +VDEQHRFGV QRL L+ K   
Sbjct: 361 AKTRRDTQDALQSGTIDLVVGTHALFQGSVAFRNLGIAVVDEQHRFGVHQRLALSAKGRG 420

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+MTATPIPRTLVLT  GD+D+S++TEKPAGRKP+ TV + ++R+ E++ R+K  ++
Sbjct: 421 VDVLVMTATPIPRTLVLTCFGDMDVSRLTEKPAGRKPVTTVSVSLDRMGEMVARIKAAVA 480

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           EG+K YW+CP +EE ++++  +V +R   L +     +A++HGRMS  +K++ M +FK+G
Sbjct: 481 EGQKVYWVCPLVEESEKTDLAAVEDRHRHLSQELKVPVALVHGRMSGEEKDAAMTAFKDG 540

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+DV DA+II+IE+AE FGLAQLHQLRGRVGRG+  SSC+LLY  PL
Sbjct: 541 AARVLVATTVIEVGVDVPDATIIVIEHAERFGLAQLHQLRGRVGRGDRPSSCVLLYKGPL 600

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + +  RLSV++ T DGFLIAEEDL+ R EGEILG +QSG P F +A+ E H  L+EIAR
Sbjct: 601 GETAAARLSVMRETNDGFLIAEEDLRLRGEGEILGTRQSGTPGFRLARLEAHGDLMEIAR 660

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDL   RG ++R LLYL+  +EA + +RAG
Sbjct: 661 DDARLVLETDPDLKGPRGAALRCLLYLFSRDEAIRLLRAG 700


>gi|254504403|ref|ZP_05116554.1| ATP-dependent DNA helicase RecG [Labrenzia alexandrii DFL-11]
 gi|222440474|gb|EEE47153.1| ATP-dependent DNA helicase RecG [Labrenzia alexandrii DFL-11]
          Length = 730

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/700 (45%), Positives = 456/700 (65%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L+PLFAP+ST  G+G K +  ++ ++      E    DLLF+ P S IDR ++P 
Sbjct: 31  MRPPVLDPLFAPVSTLPGIGPKIAKLVAGLVGGQPDREATVADLLFHIPHSLIDRRHKPG 90

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+      IVT+   I +HS+     + PY+I   D TG+IT +FF+ + + L+  F EG
Sbjct: 91  IAYSENGDIVTLDVTIGRHSAPPRHSKAPYRISAYDETGQITFVFFHSRQDWLQKTFPEG 150

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            +  V+GK++   +R  MVHP Y     +    P IE +Y L  GL+    +K +  A  
Sbjct: 151 ERRIVSGKVEWFNDRPQMVHPDYSVSPEEADQMPPIEPIYPLTAGLASKTLQKAMKAACE 210

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           ++P LPEW+ +  L +  +P  AEA   +H P+  +D E  SP  +R+AYDELLA Q+AL
Sbjct: 211 KIPHLPEWLNEPYLHQTGWPDFAEALKTLHAPKGRQDVEPQSPFMQRVAYDELLASQLAL 270

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R   +   GI    +GK+   ++  +PF  T SQ+ AIKDI  D+++  RMLR+LQG
Sbjct: 271 ALVRANMRTLGGIERKPDGKLQAAVINALPFELTDSQKDAIKDINADLAKPTRMLRLLQG 330

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG+GKT+VAL  +A  ++ G Q  +MAP  ILA+QHY  +    +   I + ++TG   
Sbjct: 331 DVGAGKTVVALATLAQVIQTGAQGGLMAPTEILARQHYASMAPICEQAGIRMALMTGKDT 390

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           Q  RR   E++  G+  +++GTHALFQ S+ +  L +V+VDEQHRFGV QRL L+ K   
Sbjct: 391 QKERRLLQEKLDAGEIDLVVGTHALFQGSVTFKDLGMVVVDEQHRFGVHQRLALSSKGRG 450

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+MTATPIPRTLVLT  GD+D+SK+  KPAGRKPIKTV + ++R++E+I R+     
Sbjct: 451 VDVLVMTATPIPRTLVLTCFGDMDVSKLLGKPAGRKPIKTVSVSLDRLEEIIGRVGAATR 510

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           EG+K YW+CP +EE ++ +  +V +R   L       ++++HGRMS  +K++ MD FK+G
Sbjct: 511 EGQKVYWVCPLVEESEKIDLAAVEDRHRVLEHALGERVSLVHGRMSAAEKDAAMDDFKSG 570

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY  PL
Sbjct: 571 RTRVLVATTVIEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKGPL 630

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + +  RL++++ T DGFLIAEEDL+ R  GEILG +QSG P F IA+ + H  L+E+AR
Sbjct: 631 GETAGARLNIMRETNDGFLIAEEDLRLRGGGEILGTRQSGTPGFRIARADEHADLMEVAR 690

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ IL  DPDL S RG ++R LLYL+  + A Q +RAG
Sbjct: 691 DDARLILETDPDLKSKRGAALRCLLYLFGRDAAIQLLRAG 730


>gi|118589912|ref|ZP_01547316.1| ATP-dependent DNA helicase [Stappia aggregata IAM 12614]
 gi|118437409|gb|EAV44046.1| ATP-dependent DNA helicase [Stappia aggregata IAM 12614]
          Length = 700

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/700 (45%), Positives = 457/700 (65%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L+PLFAP+ST  G+G K    +S ++      +    DLLF+ P S IDR +RP 
Sbjct: 1   MRPPVLDPLFAPVSTLPGIGPKIEKLVSGLVGSQPDRDATVADLLFHIPHSLIDRRHRPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+      IVT+   I +H +     + PY+I   D TG+IT +FF+ + + L+  F EG
Sbjct: 61  IAYSENGDIVTLDVTIGRHMAPPRHSKAPYRINAFDETGQITFVFFHPRRDWLEKTFPEG 120

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            +  V+GK++    R  MVHP Y     +    P IE VY L  GL+    +K +  A+ 
Sbjct: 121 ERRIVSGKVEWFNERPQMVHPDYSLKPEEAEEMPAIEPVYPLTAGLASKTLQKAVRAAVD 180

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           R+PVLPEW+ +  L +  +P   EA   +H P +  D E  SP  +RLAYDELLA Q+AL
Sbjct: 181 RIPVLPEWLNEAHLHQTGWPDFGEALKTLHAPHERSDLEPASPYMQRLAYDELLASQLAL 240

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++R   +   GI    +G + + ++  +PF  T SQ  AI++I +D+++  RMLR+LQG
Sbjct: 241 AMVRAHMRTLGGIARKPKGDLQKAVIAALPFQLTGSQAKAIEEINEDLAKPVRMLRLLQG 300

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG+GKT+VAL A+A  +E G Q  +MAP  ILA+QHY  +    Q   I + ++TG   
Sbjct: 301 DVGAGKTVVALAALAQVIETGAQGALMAPTEILARQHYASMLPLCQKAGIRLALMTGKDS 360

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           Q  RR   E++  G+  +++GTHALFQ S+ +  L +V+VDEQHRFGV QRL L+ K   
Sbjct: 361 QKERRIRQEQLDAGEIDLVVGTHALFQGSVTFRNLAMVVVDEQHRFGVHQRLALSAKGNG 420

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+MTATPIPRTLVLT  GD+D+S++T+KPAGRKPI TV + ++R+DE+I R+   ++
Sbjct: 421 VDVLVMTATPIPRTLVLTGFGDMDVSRLTDKPAGRKPITTVSVSLDRLDEIIGRVGAAVA 480

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +G+K YW+CP +EE ++ +  +V +R   L       ++++HGRM+  +K++ M  FK+G
Sbjct: 481 DGQKVYWVCPLVEESEKIDLAAVEKRHRVLEHALRQRVSLVHGRMNADEKDAAMADFKSG 540

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG+DV DA+II+IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY  PL
Sbjct: 541 VTKVLVATTVIEVGVDVPDATIIVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKGPL 600

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + +  RL++++ T DGFLIAEEDLK R  GEILG +QSG P F IA+ + H  L+E+AR
Sbjct: 601 GETAGARLNIMRQTNDGFLIAEEDLKLRGGGEILGTRQSGTPGFRIARADEHADLMEVAR 660

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ IL  DPDL + RG+++R LLYL+  + A + +RAG
Sbjct: 661 DDARLILELDPDLKTKRGEALRCLLYLFGRDAAIRLLRAG 700


>gi|307942226|ref|ZP_07657577.1| ATP-dependent DNA helicase RecG [Roseibium sp. TrichSKD4]
 gi|307774512|gb|EFO33722.1| ATP-dependent DNA helicase RecG [Roseibium sp. TrichSKD4]
          Length = 700

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/700 (45%), Positives = 460/700 (65%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L+PLFAP+S+  G+G K +  L+  +      E    DLLF+ P S IDR ++P 
Sbjct: 1   MRPPVLDPLFAPVSSLPGIGPKIAKLLTGFLTQNPDREATVADLLFHLPHSVIDRRHKPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+      IVT+   I +H +     + PYKI   D TG+IT +FF+ + + L+ +F  G
Sbjct: 61  IAYSENGDIVTLDVMIDRHQAPPRGSKAPYKITAFDDTGQITFVFFHPRRDWLEKMFPAG 120

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            +  V+GK++   ++  MVHP Y+    +  + P +E VY L  GL+    +K +  A+ 
Sbjct: 121 ERRIVSGKVEWFNSQPQMVHPDYVVSPEEADSLPTLEPVYPLTAGLASKTLQKGLGAAID 180

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           R+P LPEW++    ++  + S +EA   +H P + +D +  SP  +RLAYDELLA Q+AL
Sbjct: 181 RIPHLPEWLDAAHQRRNHWQSFSEALVQVHKPDERQDLDPESPCVQRLAYDELLASQLAL 240

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R Q ++  GI     G + ++++  +PF  T SQ+++I +I  D+++  RMLR+LQG
Sbjct: 241 ALVRAQMRQLGGIARATTGTLQKEVIAALPFELTASQQTSISEINDDLAKPVRMLRLLQG 300

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL A+A  +E G Q  +MAP  ILA+QHY  +    +   I + ++TG   
Sbjct: 301 DVGSGKTVVALSALAQVIETGAQGALMAPTEILARQHYASMLTLCEKAGIRLALLTGKDS 360

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR   E++  G+  + +GTHALFQ S+ +  L LV+VDEQHRFGV QRL L+ K   
Sbjct: 361 AKTRRDVQEKLLSGEIDLAVGTHALFQGSVAFRDLGLVVVDEQHRFGVHQRLALSAKGRG 420

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+MTATPIPRTLVLTS GD+D+S++T+KPAGRKPI TV   ++R++E+I R+   + 
Sbjct: 421 VDVLVMTATPIPRTLVLTSFGDMDVSRLTDKPAGRKPITTVSASLDRLEEIISRVGNAIQ 480

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G+K YWICP +EE ++ +  +V +R   L +     ++++HGRM+  +KE+ M +FK G
Sbjct: 481 SGQKVYWICPLVEESEKIDLAAVGDRHRVLEQALGQPVSLVHGRMTADEKEAGMQAFKGG 540

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+DV DA+II+IE+AE FGLAQLHQLRGRVGRG++ S+C+LL+  PL
Sbjct: 541 DTRVLVATTVIEVGVDVPDATIIVIEHAERFGLAQLHQLRGRVGRGDKPSTCVLLFKGPL 600

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + + +RL++++ T DGFLIAEEDLK R  GEILG +QSGMP F IA  E H  L+E AR
Sbjct: 601 GETASSRLNIMRQTNDGFLIAEEDLKLRGGGEILGTRQSGMPGFRIADAESHADLMETAR 660

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ IL +DP L S RG+++R LLYL+  +EA   +RAG
Sbjct: 661 DDARLILDKDPQLKSERGEALRALLYLFGRDEAIALLRAG 700


>gi|319898844|ref|YP_004158937.1| ATP-dependent DNA helicase [Bartonella clarridgeiae 73]
 gi|319402808|emb|CBI76359.1| ATP-dependent DNA helicase [Bartonella clarridgeiae 73]
          Length = 701

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/701 (48%), Positives = 455/701 (64%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS LNPLF  +ST  GV  K    L+K++N      E   IDLL   P S IDR  RP
Sbjct: 1   MRPSLLNPLFTSISTLAGVNIKICSLLAKVLNINFTQREPTLIDLLRLMPHSVIDRRKRP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
            I+   E  IVT+   I QH+      R PY+++ +D TG I L+FF+ +   L+    E
Sbjct: 61  GIAFAQEGGIVTLEITIDQHTPPTNYSRSPYRVIGHDQTGTINLIFFHAQRPWLEKQLPE 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G+K+ V+GK+++ K ++ M+HP +I  + Q    P IE +Y    GLS    ++ + +AL
Sbjct: 121 GKKVIVSGKVERFKGQLSMIHPDHIAFHEQLDQIPFIEPIYPSTAGLSTKTIRRAMQKAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             +P LPEWIE+ + ++ +F S   A   IH P    D    S AR+RLAYDE  A QIA
Sbjct: 181 ECIPPLPEWIEESVKKEHNFSSFPVALRRIHAPINPDDLSLESTARKRLAYDEFFASQIA 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R + K   GI     G   +K+L  +PF  T  Q  AIKDI  D++    MLR+LQ
Sbjct: 241 LGLVRLETKSLSGISRPSTGAYTKKLLEVLPFQLTNGQIKAIKDIESDLASPEPMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VAL+A+A   E  GQ+ +M P  +LA+QH+  I    +   +   ++TG  
Sbjct: 301 GDVGTGKTVVALMAIAQIAENAGQSALMVPTEVLARQHFATITPLVEKIGLKTALLTGRE 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   L+ I  G+  IIIGTHAL Q+++ Y  L L I+DEQHRFGV QRL LT K  
Sbjct: 361 KGKVRANILDAILSGETSIIIGTHALIQENVTYNNLALAIIDEQHRFGVHQRLTLTAKGN 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P +L+MTATPIPRTLVLTS GD+D+SKIT+KP GR+PI T  IP  RI+E+IER+   L
Sbjct: 421 KPDMLVMTATPIPRTLVLTSYGDMDVSKITDKPIGRQPITTATIPSERINELIERIATAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            + +K YWICP +EE       S+  RF SL + F + + +IHG+MS  +KE+V+ SFKN
Sbjct: 481 QKEEKIYWICPLVEESTTLELTSIENRFASLQKRFGAHVGMIHGKMSTDEKEAVITSFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+ATTVIEVGID+ DASII+IE+AEHFGLAQLHQLRGRVGRG + SSCILLY  P
Sbjct: 541 ANICILVATTVIEVGIDIPDASIIVIEHAEHFGLAQLHQLRGRVGRGNKKSSCILLYKSP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+K +  RL++++NTEDGF IAEEDL+ R EGE+LG +QSGMP+F IA   +H  LL IA
Sbjct: 601 LTKTAEARLNIMRNTEDGFKIAEEDLRLRGEGELLGTRQSGMPEFYIANLAVHSDLLLIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +++A   L +DP+L+S +GQ++R+LLYL+  ++A Q IRAG
Sbjct: 661 KRNAHLFLKRDPNLSSEQGQAVRLLLYLFGRDDALQLIRAG 701


>gi|319783818|ref|YP_004143294.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169706|gb|ADV13244.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 702

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/702 (47%), Positives = 470/702 (66%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNAN-ETRFIDLLFYHPSSFIDRHYRP 59
           MRP+ L+PLF P+++  GVG K    + K++     +   R  DLLF  P + IDR  RP
Sbjct: 1   MRPTILDPLFVPITSLAGVGPKVGALIEKVVPADLGDRAARAGDLLFVLPHTVIDRRSRP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+  +E +IVT+   I +H       R  PY++  +D TGEI L FF+     L+    
Sbjct: 61  GIAGSAEGQIVTLDVRIDRHQPPPRGNRSVPYRVFAHDDTGEIALTFFHAHASYLEKAMP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG  + V+G+++    R  MVHP +I   S+  N PL+E VY L  GLS  + ++ I +A
Sbjct: 121 EGEHVVVSGRMEWFNGRPSMVHPDHIALASEAENLPLVEPVYPLTAGLSGKVLRRAIGQA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L+R+P  PEW +   +++ +F ++ +A   IHNP    D      A  RLAYDELLA Q+
Sbjct: 181 LTRVPEFPEWQDGAFMRRHTFAAVGDALARIHNPADPIDVSIDGAAWRRLAYDELLASQV 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +L L+R + ++  G P+  +G+I +K+   +P+S T SQE A+ +I  D++   RMLR+L
Sbjct: 241 SLALVRAKVRRLSGRPLVGDGRIVEKLRAALPYSLTSSQEFALAEINADLADPERMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL+AMA AVEAGGQA +MAP  ILA+QH   I        + + I+TG 
Sbjct: 301 QGDVGSGKTVVALLAMARAVEAGGQAALMAPTEILARQHLATITPLAAKVGLRIAILTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L  +A G+  I++GTHALFQ+++ ++ L+  ++DEQHRFGV QRL +T K 
Sbjct: 361 EKGRERADTLAGLASGEIDIVVGTHALFQETVTFHDLVFAVIDEQHRFGVHQRLAITAKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            AP +L+MTATPIPRTLVLT+ GD+D+SK+TEKPAGR+PI+TV +P+ R+DE++ R+   
Sbjct: 421 DAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPIRTVTLPLERLDELVARMVDA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++ G+K YWICP +EE +E    S  +RF SL   F   I ++HGR+   +K+  M +FK
Sbjct: 481 VAGGQKIYWICPLVEESEEIKLMSAEDRFASLKPLFGDRIGLVHGRLKGAEKDEAMRAFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++LIATTVIEVG+DV DA++++IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY  
Sbjct: 541 QGETRILIATTVIEVGVDVPDATVMVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKD 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RLSV++ TEDGFLIAEEDLK R EGE+LG +QSG P F +A+ E H  LLE 
Sbjct: 601 PLGETAKRRLSVMRETEDGFLIAEEDLKLRGEGELLGTRQSGTPGFQVARIEAHADLLEA 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR DA+ IL++DP+L S RG+++R+LLYL+  +EA + +RAG
Sbjct: 661 ARDDARLILSRDPELQSQRGEALRLLLYLFGRDEAVRLLRAG 702


>gi|304391608|ref|ZP_07373550.1| ATP-dependent DNA helicase RecG [Ahrensia sp. R2A130]
 gi|303295837|gb|EFL90195.1| ATP-dependent DNA helicase RecG [Ahrensia sp. R2A130]
          Length = 702

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/702 (46%), Positives = 457/702 (65%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANET-RFIDLLFYHPSSFIDRHYRP 59
           MRP  LNPLF+PL +  G+G K ++ LSK++  G+        DLLF+ PS  IDR  RP
Sbjct: 1   MRPDILNPLFSPLQSLPGIGPKLAVALSKLLKGGDGKLPAHVSDLLFHLPSGLIDRRNRP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I +  +  + T+   + +H        + PYK+  +D +GEI L++F  +   L++   
Sbjct: 61  LIMDAPDGSLATLELRVDRHEEPPRGNFKVPYKVFGHDESGEIGLVWFRGQARWLRDKLP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG    V+G+++    R  MVHP ++         PL+E VY L  G+S+ +  K +   
Sbjct: 121 EGETRIVSGRVEWFNGRPNMVHPDHVVSPENIDELPLVEPVYPLTAGVSLKVMGKAVDAT 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           LS+LP LPEW E  +L K  +P++AEA + IH+P+   D      A  RLAYDELLAGQ+
Sbjct: 181 LSKLPDLPEWAEPSVLAKHEWPAMAEALDRIHHPQDELDLSVHGKAWHRLAYDELLAGQL 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + K+  GI    +G++ + + +  P+  T +QE ++ +IL DM+Q  RMLR+L
Sbjct: 241 ALALVRSRMKRSAGIAWVGDGRLQKVVRKTFPYPLTGAQERSVGEILADMAQPERMLRML 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL+A  AA+EAGGQA IMAP  ILA+QH   I    +   I + I+TG 
Sbjct: 301 QGDVGSGKTIVALLACCAAIEAGGQAAIMAPTEILARQHLATITPLAEAAGIRIAILTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LER+A G   +++GTHALFQ  +++  L L IVDEQHRFGV QRL L  K 
Sbjct: 361 EKGKTREAILERLADGSIDLLVGTHALFQGPVEFKNLALGIVDEQHRFGVHQRLALAAKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               +L+MTATPIPRTLVLT  GD+D+SK+ EKPA R PI+T  +P+ R+D++I+R    
Sbjct: 421 AGADILVMTATPIPRTLVLTFFGDMDVSKLDEKPAHRLPIQTNALPMERLDQLIQRTVDA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +++G K YW+CP +E+  E    S   R++SL      ++ ++HGRM   +K++ M  FK
Sbjct: 481 VAKGDKIYWLCPLVEDNDELPVTSAQARYDSLRALMGDNVGLVHGRMKPTEKDAAMADFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++L+ATTVIEVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY  
Sbjct: 541 EGRTRVLVATTVIEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDKSSSCLLLYKA 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + S  RL +++ +EDGF IAEEDLK R EGEILG +QSG P F IAQ E H  +LE+
Sbjct: 601 PLGEVSTARLKIMRESEDGFRIAEEDLKLRGEGEILGTRQSGTPGFQIAQMEHHGDILEL 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR DA+ ++  DP+L S RG+++R+LLYL+  +EA + +RAG
Sbjct: 661 ARDDARLVIATDPELESERGKALRVLLYLFSKDEAVRLLRAG 702


>gi|319407173|emb|CBI80812.1| ATP-dependent DNA helicase [Bartonella sp. 1-1C]
          Length = 701

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/701 (47%), Positives = 453/701 (64%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS LNPLF P++T  GV  K     +K++N      E   IDLL   P S IDR  +P
Sbjct: 1   MRPSLLNPLFTPINTLAGVNTKICSLFAKVLNINLGQREPTLIDLLRLMPHSVIDRRKQP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
            I    E  IVT+   I QH       R PY+++  D TG I L+FF+ +   L+    +
Sbjct: 61  NIFSAQEGDIVTLEIIIDQHIPPTNHSRAPYRVIGYDQTGIINLIFFHAQRSWLEKQLPK 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G+K+ V+GK+++ K ++ M+HP +I    Q    P IE +Y    GLS    ++   +AL
Sbjct: 121 GKKVVVSGKVERFKGQLSMIHPDHILFYEQLDQMPFIEPIYPSTAGLSTKTLRRATKKAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             +P LPEWIE+ + ++ +F S A +   IH+P    D    S AR+RLAYDE  A QIA
Sbjct: 181 DSIPSLPEWIEESIKKEHNFSSFAVSLRRIHDPINPDDLTLESTARKRLAYDEFFANQIA 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R + K   G      G   +K+L  +PF  T  Q  AIKDI  D++    MLR+LQ
Sbjct: 241 LGLVRLETKSLSGTSRPPTGTYTKKLLEILPFQLTNGQIKAIKDIENDLASPEPMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VAL+A+A   E  GQ+ +M P  +LA+QH+  I    +   +   ++TG  
Sbjct: 301 GDVGTGKTVVALMAIAQIAENSGQSALMVPTEVLARQHFATITPLAEKIGLQTALLTGRE 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + L+ I  G+A IIIGTHAL Q+ + Y  L L I+DEQHRFGVQQRL LT K  
Sbjct: 361 KGKVRARILDTILSGEASIIIGTHALIQEHVTYNNLALAIIDEQHRFGVQQRLTLTAKGN 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P +L+MTATPIPRTL+LTS GD+D SKIT+KP GR PI T  IP  RI+E+IER+   +
Sbjct: 421 KPDMLVMTATPIPRTLILTSYGDMDASKITDKPIGRHPITTATIPSERINELIERIATAV 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            + +K YWICP +EE K     S+  RF SL + F + + +IHG+MS  +KE+VM SFK 
Sbjct: 481 QKEEKIYWICPLVEESKTLQLTSIESRFTSLQKRFGTRVGMIHGKMSTDEKETVMTSFKK 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+ATTVIEVG+D+ DASII+IE+AEHFGLAQLHQLRGRVGRG + SSCILLY  P
Sbjct: 541 ANICILVATTVIEVGVDIPDASIIVIEHAEHFGLAQLHQLRGRVGRGNKKSSCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+K +  RL++++NTEDGF IAEEDL+ R EGE+LG +QSGMP+F IA   +H +LL IA
Sbjct: 601 LTKTAEARLNIMRNTEDGFTIAEEDLRLRGEGELLGTRQSGMPEFYIANLAVHRNLLLIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +K+A  +L +DP+L+S +GQ++R+LLYL+  ++A Q +RAG
Sbjct: 661 KKNAHLLLQRDPNLSSEQGQAVRLLLYLFGRDDALQLLRAG 701


>gi|254469973|ref|ZP_05083378.1| ATP-dependent DNA helicase RecG [Pseudovibrio sp. JE062]
 gi|211961808|gb|EEA97003.1| ATP-dependent DNA helicase RecG [Pseudovibrio sp. JE062]
          Length = 700

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/700 (46%), Positives = 459/700 (65%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLFA ++   G+G K +  ++ ++      E R  DLLF+ P + IDR  RP 
Sbjct: 1   MRPTRLDPLFASVTKLPGIGPKIAKTITNLLVGSPDREARISDLLFHVPVNVIDRRLRPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           ++   E  IVT+   I QH +     R PYK+L +D TG I L+FF+ + + L+ V   G
Sbjct: 61  VAASPEGEIVTLVLQIDQHRAPPRGSRAPYKVLAHDETGAIELVFFHARGDYLQRVLPVG 120

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            K  ++GK++    R  MVHP ++    +  N PL+E VY +  GL+    ++ +  AL 
Sbjct: 121 EKRIISGKVEWFNERAQMVHPDHMVSEEEAENLPLVEPVYPMTAGLASKTLQRAMGTALQ 180

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            LP +PEW  K+ +++++FP    A   IH P  A+D      AR RLAYDE LA Q+AL
Sbjct: 181 FLPQMPEWQNKEFVEQRNFPPFDVALRSIHKPEDARDLAPEGLARARLAYDEFLANQLAL 240

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R   +   G     +G + +KIL  +PF  T  QE A+K+I  D+ +  RMLR+LQG
Sbjct: 241 ALVRNSLRHMGGKARKGDGSLRRKILAALPFELTDGQEDALKEIFADLEEPTRMLRLLQG 300

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+V L+AMAA +E GGQA +MAP  ILA+QH+  +K       I   +++G   
Sbjct: 301 DVGSGKTVVGLMAMAAVIETGGQAAMMAPTDILARQHFASMKPLCDAAGIRAAVLSGKDT 360

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +R+  E +  G+  +I+GTHALFQ ++ +  L + IVDEQHRFGV QRL L+ K   
Sbjct: 361 AKTKREIGEALEAGEIDLIVGTHALFQSTVNFKDLGITIVDEQHRFGVHQRLALSSKGAH 420

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+MTATPIPRTLVL+  GD+D+S++T+KP GR+ IKTV I ++RI EV+ERL+ +++
Sbjct: 421 VDVLVMTATPIPRTLVLSYFGDMDVSRLTDKPKGRQEIKTVSISLDRIGEVVERLRAMIA 480

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +G+K YW+CP +EE ++ +  +  ERFN L       +A++HGR    +K++ MD+FKNG
Sbjct: 481 QGQKIYWVCPLVEESEKIDLAAAEERFNDLQNALGPVVALVHGRQKADEKQAAMDAFKNG 540

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+DV DA+II+IE+AE FGLAQLHQLRGRVGRG   SSC+LL+  PL
Sbjct: 541 DARVLVATTVIEVGVDVPDATIIVIEHAERFGLAQLHQLRGRVGRGSLASSCLLLFKAPL 600

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++ + +RL++L+ T DGFLIAEEDL+ R EGE+LG +QSG P F +A  E H  L+EIAR
Sbjct: 601 NETAASRLNILRQTNDGFLIAEEDLRLRGEGELLGTRQSGSPGFRLASIEDHADLMEIAR 660

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DAK I+  DP+L + RG ++R LLYL+  +EA + +RAG
Sbjct: 661 DDAKLIMATDPELETERGDALRHLLYLFARDEAIKLLRAG 700


>gi|319404154|emb|CBI77747.1| ATP-dependent DNA helicase [Bartonella rochalimae ATCC BAA-1498]
          Length = 701

 Score =  680 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/701 (47%), Positives = 451/701 (64%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNA-NETRFIDLLFYHPSSFIDRHYRP 59
           M PS LNPLF  ++T  GV  K     +K++N      E   IDLL   P S IDR  +P
Sbjct: 1   MHPSLLNPLFTSINTLAGVNTKICSLFAKVLNINLVQREPTLIDLLRLMPHSVIDRRKQP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
            IS   E  IVT+   I QH       R PY+++  D TG I L+FF+ +   L+    +
Sbjct: 61  NISFAQEGDIVTLEIIIDQHIPPTNHSRAPYRVIGYDRTGTINLIFFHAQRSWLEKQLPK 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G+K+ V+GK+++ K ++ M+HP +I    Q    P IE +Y    GLS    ++   +AL
Sbjct: 121 GKKVIVSGKVERFKGQLSMIHPDHILFYEQLDQMPFIEPIYPSTAGLSTKTLRRATKKAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             +P LPEWIE+ + ++ +F S A +   IH+P    D    S AR+RLAYDE  A QIA
Sbjct: 181 DFIPSLPEWIEESIKKEHNFSSFAVSLRRIHDPINPDDLTLESTARKRLAYDEFFANQIA 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R + K   G      G   +K+L  +PF  T  Q  AIKDI  D++    MLR+LQ
Sbjct: 241 LGLVRLETKSLSGTSRPPTGAYTKKLLEILPFQLTNGQIKAIKDIENDLASPEPMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VAL+A+A   E  GQ+ +M P  +LA+QH+  I    +   +   ++TG  
Sbjct: 301 GDVGTGKTVVALMAIAQIAENSGQSALMVPTEVLARQHFATIAPLAEKIGLQTALLTGRE 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R K L+ I  G+A IIIGTHAL Q+ + Y  L L I+DEQHRFGV QRL LT K  
Sbjct: 361 KGKVRAKILDTILSGEASIIIGTHALIQEHVTYNNLALAIIDEQHRFGVHQRLTLTAKGN 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P +L+MTATPIPRTL+LTS GD+D SKIT+KP GR PI T  IP  RI+E+IER+   +
Sbjct: 421 KPDMLVMTATPIPRTLILTSYGDMDASKITDKPIGRNPITTATIPSERINELIERIATAV 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            + +K YWICP +EE K     S+  RF SL + F + + +IHG+MS  +KE+VM SFKN
Sbjct: 481 QKEEKIYWICPLVEESKTLQLTSIENRFASLQKRFGTRVGMIHGKMSTDEKETVMASFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+ATTVIEVG+D+ DASII+IE+AEHFGLAQLHQLRGRVGRG + SSCILLY  P
Sbjct: 541 ANICILVATTVIEVGVDIPDASIIVIEHAEHFGLAQLHQLRGRVGRGNKKSSCILLYKGP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+K +  RL++++NTEDGF IAEEDL+ R EGE+LG +QSGMP+F IA   +H +LL IA
Sbjct: 601 LTKTAEARLNIMRNTEDGFTIAEEDLRLRGEGELLGTRQSGMPEFYIANLAVHRNLLLIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +K+A  +L +DP+L+S +G ++R+LLYL+  ++A Q +RAG
Sbjct: 661 KKNANLLLQRDPNLSSEQGYAVRLLLYLFGRDDALQLLRAG 701


>gi|163868513|ref|YP_001609722.1| ATP-dependent DNA helicase RecG [Bartonella tribocorum CIP 105476]
 gi|161018169|emb|CAK01727.1| ATP-dependent DNA helicase [Bartonella tribocorum CIP 105476]
          Length = 702

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/702 (47%), Positives = 460/702 (65%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           M PS L PLF  + T  G+  K    L+K++N      E   IDLL   P S IDR  RP
Sbjct: 1   MPPSLLTPLFNSIRTLSGITPKVYGLLTKLLNVNPTQREATLIDLLQLMPHSVIDRRMRP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I    E   VT+   I QH        + PY+++ ++ TG+I L+FF+ +   LK    
Sbjct: 61  SIDCAKEGETVTLEIVIDQHQPPPRGHNKIPYRVIAHNQTGKINLVFFHAQPLWLKKQLP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG+K+ V+GK++     + M HP +I  + Q    PLIE VY    GL+    ++ I  A
Sbjct: 121 EGKKVIVSGKVEWFNGLLSMAHPDHIAPSEQSNQIPLIEPVYPSTAGLAAKTLRRAIQHA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L  +P+LPEWI++++ ++++F S + A   IH P    D    S AR+RLAYDELLA Q+
Sbjct: 181 LDFIPLLPEWIDENVKKQQNFSSFSVALRRIHAPINPGDLSLESTARKRLAYDELLACQL 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + K  +G      G   +K+L  +PF  T  Q  A++DI  D++    MLR+L
Sbjct: 241 ALGLVRLKTKSLVGASRPSTGIYTKKLLNVLPFQLTTGQIKAVEDIANDLASPEPMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVG+GKT+VAL+AMA   E  GQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 301 QGDVGAGKTVVALMAMAQIAENSGQSALMAPTEVLARQHFATIAPLAEKIGLQTTLLTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L  I  GQ  I+IGTHAL QDS+ Y  L L I+DEQHRFGV QR+ LT+K 
Sbjct: 361 EKGKLRTNILNDILSGQVSIVIGTHALIQDSVTYNNLALTIIDEQHRFGVHQRIALTEKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P +L+MTATPIPRTLVLT+ GD+D+SKITEKP GR+PI T ++ + RI E+IER+ + 
Sbjct: 421 DKPDMLVMTATPIPRTLVLTAFGDMDVSKITEKPIGRQPITTAMLSLKRIHELIERIAIA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L +G+K YWICP +EE K  +  S+  RF  LHE F + + +IHG+MS  +KE+ M SFK
Sbjct: 481 LDKGEKLYWICPLVEESKALDLTSIENRFAFLHERFGTHVGMIHGKMSTAEKETAMASFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++L+ATTVIEVG+D+ DASIIIIE+AEHFGL+QLHQLRGRVGRG++ SSCILLY  
Sbjct: 541 CGNTRILVATTVIEVGVDIPDASIIIIEHAEHFGLSQLHQLRGRVGRGDKKSSCILLYKE 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL+K + TRL++++NTEDGF IAEED + R EGE+LG KQSG+P+F IA   +H  LL I
Sbjct: 601 PLTKTAATRLNIIRNTEDGFEIAEEDWRLRGEGELLGTKQSGVPEFHIANLAVHSDLLSI 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA+  L +DP L+S +GQ++R+LLYL+++++A + +RAG
Sbjct: 661 ARKDARLFLQRDPYLSSEQGQALRLLLYLFRHDDAARLLRAG 702


>gi|114705015|ref|ZP_01437923.1| ATP-dependent DNA helicase [Fulvimarina pelagi HTCC2506]
 gi|114539800|gb|EAU42920.1| ATP-dependent DNA helicase [Fulvimarina pelagi HTCC2506]
          Length = 700

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/701 (46%), Positives = 463/701 (66%), Gaps = 2/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLFA ++T  GVG K +  L  ++        R  DLLF+ PS  IDR  R +
Sbjct: 1   MRPAILDPLFAAVTTLDGVGPKVAGLLQTLL-VRPGQTLRVRDLLFHLPSGLIDRRRREE 59

Query: 61  ISEISEERIVTITGYISQHSSFQL-QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I    +  IVT+T  I +H      Q   PY++   D TGEI L +F  K   L+N+   
Sbjct: 60  ILSAGQGAIVTLTVRIDRHQPPGRAQSNAPYRVFAQDETGEIALTYFRAKAAWLENLLPV 119

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K+ V+GK++    R  MVHP ++   ++  N  L+E +Y L  GLS  + ++ I +AL
Sbjct: 120 GEKMLVSGKVEWFNGRAQMVHPDFVAPLAEAENHSLVEPIYPLTAGLSGKVLRRAIAQAL 179

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            + P +PEWIE  +L++++FP + +    +H+P  A D +  SPA  RLAYDE LA Q+A
Sbjct: 180 EKTPDMPEWIEPGVLKRQTFPGLKDGLARLHDPSDAIDLDPASPAFRRLAYDEFLANQLA 239

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L R++ + + G  +  +G +  ++   +PF  T++Q SA+ DIL DM    RMLR+LQ
Sbjct: 240 LTLSRQKMRGKSGRSLEGDGSLLARLKHALPFELTEAQVSAVGDILADMKSPERMLRLLQ 299

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VAL+AMA A EAG Q+V++AP  ILA+QH   + K      I +EI+TG  
Sbjct: 300 GDVGAGKTVVALMAMARAAEAGVQSVLLAPTEILARQHASGLSKLCDAAGITLEILTGRD 359

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   L RI  G   I++GTHALFQ+ + Y+ L LV+VDEQHRFGV QRL+L+ K  
Sbjct: 360 TGKARDAKLGRIESGDTQIVVGTHALFQEGVDYHDLGLVVVDEQHRFGVHQRLQLSAKGK 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P +L+MTATPIPRTLVL + GD+D+S++  KPAGRKPI TV +P  R+ ++++R+   +
Sbjct: 420 RPDLLVMTATPIPRTLVLAAFGDMDVSRLVGKPAGRKPIATVALPEERLLDIVKRIGSAV 479

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G + YW+CP +EE ++S+  +  ER   L + F   + ++HGRM   +K++ M +F+ 
Sbjct: 480 EGGDRVYWVCPLVEESEKSDLTAAEERAEVLRKFFGDQVGLVHGRMKGEEKDAAMAAFQA 539

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GT ++++ATTVIEVG+DV DASII+IE+AE FGL+QLHQLRGRVGRG + SSC+LLY PP
Sbjct: 540 GTTRIIVATTVIEVGVDVPDASIIVIEHAERFGLSQLHQLRGRVGRGNKASSCVLLYRPP 599

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + +  RL++++ TEDGF IAEEDLK R EG++LG +QSGMP F +A+ E H  L+E+A
Sbjct: 600 LGETASARLNIMRETEDGFRIAEEDLKLRGEGDLLGTQQSGMPFFRLARLEHHADLMEVA 659

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R DA+ IL  DP+L S RG+++R LLYL+  +EA + +R+G
Sbjct: 660 RDDARLILATDPELKSARGEALRTLLYLFGKDEAVRLLRSG 700


>gi|110634056|ref|YP_674264.1| ATP-dependent DNA helicase RecG [Mesorhizobium sp. BNC1]
 gi|110285040|gb|ABG63099.1| ATP-dependent DNA helicase RecG [Chelativorans sp. BNC1]
          Length = 702

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/702 (46%), Positives = 478/702 (68%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANET-RFIDLLFYHPSSFIDRHYRP 59
           MRPS L+PLFAP +   G+G + +  ++ ++    AN   R  DLLF  P S IDR  RP
Sbjct: 1   MRPSLLDPLFAPATALEGIGSRTAGLIANVVPADLANRPLRVGDLLFVLPHSLIDRTNRP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
           +++   +  IVT+   + +H      K+  PY++   D TG+ITL FF+     L+  F 
Sbjct: 61  EVAYAPQGAIVTLRLTVDRHQPPPRGKKNVPYRVFAFDETGQITLTFFHAHPAYLEKQFP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G ++ V+G+++    R  MVHP YI   S+  + P +E VY L  GLS  + ++ I +A
Sbjct: 121 VGSEVLVSGRMEWFNGRPSMVHPDYIVPASEAASLPPLEPVYPLTAGLSPKVLRRAIAQA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           ++R+P +PEW ++ L  +  F S   A + +H+P+  +D    +   +RLAYDELLA Q+
Sbjct: 181 VARVPDMPEWQDEALKTQLGFSSFRAALDRLHDPKNVEDISPENAPWQRLAYDELLASQL 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +L L+R + +K  G P+N +G +A +I   +P+S T SQE A+ DI  D+++  RMLR+L
Sbjct: 241 SLALVRARTRKLAGRPLNGDGMLAARIKHALPYSLTPSQERAVADIFADLAKDERMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVG+GKT+VAL+AMA A EAGGQ+ +MAP  +LA+QH+  +    +   +   ++TG 
Sbjct: 301 QGDVGAGKTVVALLAMARAAEAGGQSALMAPTELLARQHFATVAPLAEKAGLKAALLTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R++ L RIA G+   +IGTHALFQ+++Q++ L+L I+DEQHRFGV QRL +  K 
Sbjct: 361 EKGRERQEILARIASGEVSFVIGTHALFQETVQFHDLVLTIIDEQHRFGVHQRLAINAKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            AP +L+MTATPIPRTLVL++ GD+D+S++TEKPAGRKPI+TV +P +R+DE+IERL+  
Sbjct: 421 DAPDMLVMTATPIPRTLVLSAFGDMDVSRLTEKPAGRKPIRTVTMPTDRLDELIERLQNA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           + EG+K YWICP +EE       S  +RF SL   F  ++ ++HGRM+  +K+  M +FK
Sbjct: 481 IVEGQKIYWICPLVEESDAIELTSAEDRFASLKHVFGHAVGLVHGRMAAREKDEAMRAFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G  ++L+ TTV+EVG+DV DA+II+IE+AE FGLAQLHQLRGRVGR ++ SSC+LLY P
Sbjct: 541 DGQTRILVGTTVVEVGVDVPDATIIVIEHAERFGLAQLHQLRGRVGRSDKPSSCVLLYKP 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  RL++L+ TEDGFLI+EEDLK R EG++LG +QSG P F +A+ E H  LL  
Sbjct: 601 PLGEVAKRRLAILRETEDGFLISEEDLKLRGEGDLLGTRQSGTPGFQVARLEFHAELLAT 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR DA+ +L++DP+L S RG+++R+LLYL+  +EA + +RAG
Sbjct: 661 ARDDARLLLSRDPELASERGRALRVLLYLFGKDEAVRLLRAG 702


>gi|288958503|ref|YP_003448844.1| ATP-dependent DNA helicase [Azospirillum sp. B510]
 gi|288910811|dbj|BAI72300.1| ATP-dependent DNA helicase [Azospirillum sp. B510]
          Length = 693

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/700 (42%), Positives = 450/700 (64%), Gaps = 7/700 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L PLF P++   G+G +    + K+           +DLL++ P   +DR + PK
Sbjct: 1   MRPAILFPLFKPVTALPGLGPRLGKLVEKLAGPH------VVDLLWHLPCGVVDRRFSPK 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I++    RI T+T  I  H+   L  R PYKI   D TG + L++F+ + + L      G
Sbjct: 55  IADAPHGRIATLTVRIDSHAP-PLNPRHPYKIRCTDETGVLELVYFHVRGDWLSKQIPAG 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
             + V+GK++   +   + HP  +       +  L+E VY +  GL     +K +  AL+
Sbjct: 114 TTMVVSGKVEWFNDTAQITHPDAVVAVDAKEDLELVEPVYPMTAGLPAKTLRKAVRAALA 173

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            +P L EW +   L ++ +P  A+A    H P    D   T+P R RLAYDELLA Q+AL
Sbjct: 174 DVPALAEWQDPAWLARRQWPGWADALKRAHAPEDEGDLAATAPIRCRLAYDELLANQLAL 233

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           +L+R   ++  G     +G + +  L  +PFS T SQ +A++DI  DM+ + RMLR+LQG
Sbjct: 234 MLVRASQRRLAGRVTQGDGTLRRAALAALPFSLTGSQAAALEDIYVDMAAERRMLRLLQG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+AM  AVEAG QA +MAP  ILA+QH E +    +   + + ++TG   
Sbjct: 294 DVGSGKTVVALMAMLNAVEAGAQAALMAPTEILARQHAESLAPLCRAAGVEIGLLTGRDK 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R+  L+R+A G   +++GTHALFQ+ + +  L L ++DEQHRFGV QRL+L+ K  A
Sbjct: 354 GKARQAVLDRLASGDLPLLVGTHALFQEDVAFKDLALAVIDEQHRFGVHQRLQLSAKGRA 413

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+MTATPIPRTL LT+ GD+D+S++TEKPAGRKP++TV I ++R++EV+  ++  ++
Sbjct: 414 VDVLVMTATPIPRTLTLTAYGDMDVSRLTEKPAGRKPVQTVTIALDRLEEVVNGIQRKVA 473

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           EG + YW+CP ++E ++S+  +  ER   L   F   + ++HG+M   DK++VM +F  G
Sbjct: 474 EGARVYWVCPLVDESEQSDLAAATERHAFLRATFGDRVGLVHGKMRGSDKDAVMAAFAEG 533

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG++V +A++++IE+AE FGLAQLHQLRGRVGRGE+ SSC+L++   L
Sbjct: 534 GLDVLVATTVIEVGVNVPEATVMVIEHAERFGLAQLHQLRGRVGRGEKPSSCLLMFDANL 593

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++ +  RL  L++TEDGF+IAEEDL+ R  GE+LG +QSG+P F +A   +H  LL +AR
Sbjct: 594 TETARARLKTLRDTEDGFIIAEEDLRLRGAGEVLGTRQSGLPGFRMADLAVHGDLLAVAR 653

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ ++ +DPDL S RGQ++R LLYL++ + A + +R+G
Sbjct: 654 DDARLVVERDPDLASPRGQALRTLLYLFERDAAAKTLRSG 693


>gi|154253519|ref|YP_001414343.1| ATP-dependent DNA helicase RecG [Parvibaculum lavamentivorans DS-1]
 gi|154157469|gb|ABS64686.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 694

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/701 (42%), Positives = 447/701 (63%), Gaps = 8/701 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFAP  +  G+G +    + K+         + ID+L++ PS  IDR +RP 
Sbjct: 1   MRPEILFPLFAPARSLPGIGPRLEALVEKLAG------PKVIDILWHLPSGLIDRRHRPS 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++ +  I T+   +  H   +  KR PY++ + D TGE+ ++FF  + E L  +  EG
Sbjct: 55  IADVRDGEIATMEVTVGLHIPPRT-KRLPYRVHVFDDTGEMQIVFFNARAEHLAKILPEG 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           ++  ++G+++  +    M HP ++    +  + PL+E +Y L  GL +   +K +  AL 
Sbjct: 114 QRRIISGRVEFYQGTPQMTHPDHMIGLDELADLPLMEPIYPLTAGLPLKSIQKAVRGALP 173

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           RLP LPEW +   L+ + + +  ++    H  + A D    +PAR RLAYDELLA Q+AL
Sbjct: 174 RLPELPEWQDGPWLKARGWTNWRQSLIAAHELQSAADLGADAPARARLAYDELLANQLAL 233

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R + ++  G  I+  G++ +K+   +PF+ T +Q  A+ +I  DM   +RMLR+LQG
Sbjct: 234 GLVRLRMRRLPGRSISAPGQLRKKVEAALPFALTNAQIRALSEISADMKSNHRMLRLLQG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+AM  AVEAG QA +MAP  ILA+QHY  +        + +E++TG   
Sbjct: 294 DVGSGKTVVALLAMLDAVEAGFQAAMMAPTEILARQHYATLAPLCDAAGVRLELLTGREK 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKAT 419
              R + L R A G+  I++GTHALFQ+ + +  L   +VDEQHRFGV QRL LT +  T
Sbjct: 354 GKRREEILARAAAGEIDILVGTHALFQEDVAFRALAFAVVDEQHRFGVHQRLMLTSKGGT 413

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL+MTATPIPRTL LT+ GD+D+SK+ EKP GRKP+ T  +P++R+ EV   L   L
Sbjct: 414 GTDVLVMTATPIPRTLTLTAYGDMDVSKLDEKPPGRKPVDTRALPLDRLGEVAAGLDRAL 473

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + G + YW+CP +EE  E +  +  ER   L   +   + ++HGRM   DK++VM  F+ 
Sbjct: 474 ARGDQIYWVCPLVEESDEVDAAAAEERHRHLQSIYGEKVGLVHGRMKAADKDAVMARFQA 533

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L+ATTVIEVG++V  A++++IE+AE FGLAQLHQLRGRVGRG + SSC+LLY  P
Sbjct: 534 GDIRILVATTVIEVGVNVPTATVMVIEHAERFGLAQLHQLRGRVGRGGDKSSCLLLYQAP 593

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + +  R+ +++ TEDGF IAEEDL+ R  GE+LG +QSG+P+F +A  E    LL +A
Sbjct: 594 LGETAAARIKIMRETEDGFRIAEEDLRLRGAGELLGTRQSGLPEFRLANIETQQELLAVA 653

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             DA+ IL +DP+L S RG+++R LLYL++ +EA +++R+G
Sbjct: 654 YDDARLILDRDPELESPRGEALRTLLYLFERDEAIRYLRSG 694


>gi|121602903|ref|YP_989053.1| ATP-dependent DNA helicase RecG [Bartonella bacilliformis KC583]
 gi|120615080|gb|ABM45681.1| ATP-dependent DNA helicase RecG [Bartonella bacilliformis KC583]
          Length = 702

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/698 (46%), Positives = 464/698 (66%), Gaps = 2/698 (0%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNA-NETRFIDLLFYHPSSFIDRHYRPKISE 63
            +NPL + + T  G+  K    L+K++N   A  E + IDLL   P S IDR  +P I+ 
Sbjct: 5   LINPLLSSIRTLPGITPKICALLAKVLNIDLAQREPQLIDLLQLMPHSVIDRRMQPSIAC 64

Query: 64  ISEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
             E +IVT+   I QH       K  PY+++ +D TG+I L+FF+ ++  LK    EG+ 
Sbjct: 65  AQEGQIVTLKITIDQHQPPPTNLKSLPYRVIGHDETGQINLVFFHARSSWLKTQLPEGKT 124

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           + V+GKI++   ++ MVHP +I  + +    PLIE +Y    GLS    ++++  AL  +
Sbjct: 125 VIVSGKIERFNKQLSMVHPDHIAFSEEFNQIPLIEPIYPSTAGLSAKTLRRVVQNALEHV 184

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
           P LPEWI++ + ++++F S + A   IH+P         S AR+RLAYDELLA Q+AL L
Sbjct: 185 PFLPEWIDESVKKQQNFSSFSVALRCIHDPIDPCHLSLESTARKRLAYDELLACQLALGL 244

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R Q K   G+     G   +K+L+++PF  T  Q+  IK+I  D++    MLR+LQGDV
Sbjct: 245 VRLQTKSLTGVSRLSTGTYTEKLLKSLPFQLTNGQKKTIKEIANDLASPEPMLRLLQGDV 304

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+VAL+A+A   E  GQ+ +MAP  +LA+QH+  I    +   +   ++TG     
Sbjct: 305 GTGKTVVALMAIAQIAENLGQSALMAPTEVLARQHFSTIAPLAEKIGLQTTLLTGREKGK 364

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R   L  I+ G A IIIGTHAL Q+++ Y+ L L I+DEQHRFGV QRL LT K   P 
Sbjct: 365 TRTNILNDISSGHASIIIGTHALIQENVTYHNLSLAIIDEQHRFGVHQRLALTAKGHKPD 424

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+MTATPIPRTLVLT+ GD+D+SKITEKP GR+PI T  +P+ RI+E+IER+   L +G
Sbjct: 425 MLVMTATPIPRTLVLTTFGDMDVSKITEKPIGRQPITTATLPLERINELIERIASALEKG 484

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K YWICP +EE       S+  RF +L+E F   + +IHG+MS  +K++ M SFK G  
Sbjct: 485 EKLYWICPLVEESTTLQLTSIENRFATLYEQFGDCVGMIHGKMSTNEKDAAMASFKCGKT 544

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+ATTVIEVG+D+ DASII+IE+AEHFGL+QLHQLRGRVGRGE+ SSCILLY  PL+K
Sbjct: 545 RILVATTVIEVGVDIPDASIIVIEHAEHFGLSQLHQLRGRVGRGEKKSSCILLYKGPLTK 604

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL+++++TEDGF+IAEEDL+ R EGE+LG +QSGMP+F IA   +H  LL +ARKD
Sbjct: 605 TAAARLNIMRSTEDGFIIAEEDLRLRGEGELLGTRQSGMPEFHIANLAVHSDLLSMARKD 664

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A+  L +D  L+S RG+++R+LLYL++ + A Q +RAG
Sbjct: 665 ARLFLQRDATLSSERGKALRLLLYLFKRDYAIQLLRAG 702


>gi|163793170|ref|ZP_02187146.1| RecG-like helicase [alpha proteobacterium BAL199]
 gi|159181816|gb|EDP66328.1| RecG-like helicase [alpha proteobacterium BAL199]
          Length = 693

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/699 (42%), Positives = 458/699 (65%), Gaps = 7/699 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFA +   +GVG +Y+  + K          + +DLL++ PS  +DR   P 
Sbjct: 1   MRPELLFPLFAEVGRIKGVGPRYAKLIEKAAG------PQIVDLLWHLPSGVVDRRPSPP 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E  + R+ T+T  + +H      +R PY+++ +DG  +I L++F+ K + L+ +   G
Sbjct: 55  IPEAPDGRVATLTLTVLRHQPPP-GRRGPYRVVCSDGHADIDLVYFHAKGDWLEKLLPVG 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+G++++ + R  M HP ++    +     ++E  Y    GL +   ++ +  AL 
Sbjct: 114 EVRVVSGRLERFQGRAQMAHPEHVVPEEEAEEIRIVEPTYPSTEGLPMRTLRRAVEGALE 173

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           R+P L EW+   LL ++++P   EA    H P  A+D E  +P R RLAYDE+L+ Q+AL
Sbjct: 174 RIPTLDEWMSPSLLAQRAWPRWDEAVRRAHAPEDARDLEPDAPTRIRLAYDEILSNQLAL 233

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R + K++ G  ++ +G + + + + +PFS T +Q  A+ +I  DM+   RMLR+LQG
Sbjct: 234 ALVRARMKRQKGRSVHGDGSLREAVAKALPFSLTGAQRMALAEIEADMAADTRMLRLLQG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVAL+AM  AVE G QA +MAP  ILA+QH+  I+   +   + +EI+TG   
Sbjct: 294 DVGSGKTLVALMAMLNAVECGAQAALMAPTEILARQHFATIEPLARQAGVRIEILTGRDR 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R   + RIA G A I++GTHALFQ+ +++  L + I+DEQHRFGV QR+ L  K  A
Sbjct: 354 GKTRAAIVGRIAEGSAKIVVGTHALFQEGVEFRDLAVAIIDEQHRFGVHQRMSLGGKGQA 413

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              L+MTATPIPRTL++T+ GD+D+S++TEKP GR+PI T  + ++R+ EV++ +   L 
Sbjct: 414 VDTLVMTATPIPRTLLMTAYGDLDVSRLTEKPPGRQPIDTRTVALDRLGEVVDGVARKLD 473

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +G K YW+CP +EE ++ +  +  ER ++L   F   + ++HGR+   +K++VMD+FKNG
Sbjct: 474 QGAKVYWVCPLVEESEKLDVAAAEERASTLRRRFGDRVGVLHGRLKGPEKDAVMDAFKNG 533

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
           T  LL+ATTVIEVG+DV +A++++IE+AE FGLAQLHQLRGR+GRG++ S+C+LLY  PL
Sbjct: 534 TVDLLVATTVIEVGVDVPEATVMVIEHAERFGLAQLHQLRGRIGRGDKASTCLLLYSSPL 593

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++  + RL+V+++TEDGFLIAEEDL+ R  GE+LG +QSG+P F +A P  H SL  +AR
Sbjct: 594 TETGHARLAVMRDTEDGFLIAEEDLRLRGAGEVLGTRQSGLPTFRMADPAAHASLFPVAR 653

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
            DA+ +L QDP+L   RG++ R LLYL++ + A +++R 
Sbjct: 654 DDARLLLNQDPELEGPRGKAARTLLYLFERDAAVRYLRG 692


>gi|323136317|ref|ZP_08071399.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
 gi|322398391|gb|EFY00911.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
          Length = 700

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/701 (44%), Positives = 447/701 (63%), Gaps = 2/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLF  ++   GVG K +    +++    A E R +DLLF+ P++ +DR  RPK
Sbjct: 1   MRPDILAPLFGRVAALPGVGPKTAKLFDRLLARPGA-EARVVDLLFHLPTNVVDRSQRPK 59

Query: 61  ISEISEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+E   + +V I   + +H   Q +  R P+++L+ D TG+I L+FF    + ++     
Sbjct: 60  IAEAPMDTMVVIKATVVEHRRPQGRFARAPFRVLVEDETGDIELVFFLANPDWIERSLPI 119

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    ++G+I+    R  MVHP  +   +     P  EAVY L  GL      +   EA+
Sbjct: 120 GGTRWISGRIELYDGRRQMVHPDRVLDEAGLARLPPFEAVYGLTEGLQTRYVLRATEEAM 179

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +RLP LPEW E  +L     P+ AEA    H P          PAR+RLA DELLA Q+A
Sbjct: 180 TRLPALPEWQEPSVLAANKLPAFAEALRGAHRPESVSALSPQHPARQRLALDELLASQLA 239

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R + ++  G     +G+++Q I   +P+S T +Q+ A+ DI  D+    RMLR++Q
Sbjct: 240 LRLVRAKMRRLPGRENRGDGRLSQAIESALPYSLTGAQQRALADIRADLGSDRRMLRLVQ 299

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA +AMA+  E G Q+ +MAP  ILA+QHYE +    +   + V ++TG +
Sbjct: 300 GDVGSGKTIVAALAMASVAECGRQSALMAPTEILARQHYERLAPLLEPVGLRVALLTGRL 359

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             + R      I  G+  +++GTHAL Q  + ++ L L +VDEQHRFGVQQRL L  K  
Sbjct: 360 KASERAALHAAIGAGEIDVVVGTHALVQTDLAFHDLGLAVVDEQHRFGVQQRLALGSKGE 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  VL+MTATPIPRTL LT+ GD+D S + EKP GR PI T  +P +RI EV+  L+  L
Sbjct: 420 AVDVLVMTATPIPRTLALTAFGDMDSSALDEKPPGRTPISTRALPASRIGEVVAGLQRAL 479

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           ++G +AYW+CP +EE ++ +  +  ER   L  +F  ++ ++HGRM   +K++VM++F+ 
Sbjct: 480 AQGARAYWVCPLVEENEDLDLAAAEERAADLRRYFGDAVGLLHGRMKGPEKDAVMEAFQR 539

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTVIEVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG   SSC+LLY  P
Sbjct: 540 GDARLLVATTVIEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGTGESSCLLLYKGP 599

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+ +  RL++++ TEDGF IAEEDL+ R EGEILG +Q+GMP F +A    H  LL IA
Sbjct: 600 LSETAKARLTIIRQTEDGFRIAEEDLRLRGEGEILGTRQAGMPGFRLADLTAHARLLAIA 659

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R DA+ IL +DP+L+S RG+++R+LLYL++ +EA + +RAG
Sbjct: 660 RDDAELILRRDPELSSERGKALRVLLYLFERDEAIRLLRAG 700


>gi|209964571|ref|YP_002297486.1| ATP-dependent DNA helicase RecG [Rhodospirillum centenum SW]
 gi|209958037|gb|ACI98673.1| ATP-dependent DNA helicase RecG [Rhodospirillum centenum SW]
          Length = 693

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/700 (42%), Positives = 447/700 (63%), Gaps = 7/700 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L PLFAP+++  G+G +      ++           +DLL++ P+  +DR     
Sbjct: 1   MRPAVLYPLFAPITSLPGLGPRLGKLAERLAGPH------VVDLLWHKPAGILDRMAVES 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I    E R VT+T  +  H+   L   RPY++   D TG + L+FF+ K + L      G
Sbjct: 55  IEAAPEGRHVTLTVRVDGHAP-PLAANRPYRVRCTDHTGLMDLVFFHIKGDWLTKRLPVG 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           +K+ V+GK ++   ++ +VHP Y            +E VY L  GL+    +  I  AL 
Sbjct: 114 QKVVVSGKAERFNGQLQIVHPDYFGPAEDAPPPTAVEPVYPLTGGLNPKPLRTAIQAALQ 173

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           R P LPEW +   L+++ +P    A   +H+P    D     PAR RLAYDELLA Q+AL
Sbjct: 174 RAPALPEWQDPAWLKRQGWPDWLTALRTLHHPEGEHDIAPDGPARARLAYDELLANQLAL 233

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R   ++  G P+  +G +  K+L  +P++ T +Q  A+++I  DM+  +RMLR+LQG
Sbjct: 234 ALVRWHQRRLAGRPVAGDGHLRDKVLATLPYALTGAQRLALEEIQADMAADSRMLRLLQG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+AM  AVEAG QA +MAP  ILA+QH E +        + + ++TG   
Sbjct: 294 DVGSGKTIVALLAMLNAVEAGCQAALMAPTEILARQHAESLAPLCATAGVELAVLTGRDK 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R+  L+R+A G+ HI++GTHA+FQ+ + ++ L L ++DEQH+FGV QRL+L  K   
Sbjct: 354 GKARQAVLDRLADGRIHILVGTHAVFQEDVAFHDLALAVIDEQHKFGVHQRLQLAAKGRG 413

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              L+MTATPIPRTL LT+ GD+++S++TEKP GR+P+KTV++P  R++EVI  L   ++
Sbjct: 414 VDTLVMTATPIPRTLTLTAYGDMEVSRLTEKPPGRRPVKTVVLPAERLEEVIASLPRAIA 473

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G++ YW+CP +EE ++ +  +   R   L E F   + ++HGRM   +K++ M +F  G
Sbjct: 474 GGQRIYWVCPLVEESEQVDVAAATLRHADLRERFGERVGLVHGRMKGAEKDAAMAAFAEG 533

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG++V +A+I++IE+AE FGLAQLHQLRGRVGRG   SSC+LLY+PPL
Sbjct: 534 RLDVLVATTVIEVGVNVPEATIMVIEHAERFGLAQLHQLRGRVGRGAAASSCLLLYYPPL 593

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + +  RLSV+K +EDGFLIAE+DL+ R  GE+LG +QSG+P+F +A    H  LL  AR
Sbjct: 594 GETARERLSVMKESEDGFLIAEKDLQLRGAGEVLGTRQSGLPEFRLADLAAHGDLLTAAR 653

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ IL +DP+L S RG+++R LLYL++ + A +++R+G
Sbjct: 654 DDARLILERDPELQSPRGEALRTLLYLFERDAAVKYLRSG 693


>gi|240850745|ref|YP_002972145.1| ATP-dependent DNA helicase RecG [Bartonella grahamii as4aup]
 gi|240267868|gb|ACS51456.1| ATP-dependent DNA helicase RecG [Bartonella grahamii as4aup]
          Length = 702

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/702 (47%), Positives = 461/702 (65%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           M PS L PLF  + T  G+  K    L+K++N      E   IDLL   P S IDR  RP
Sbjct: 1   MPPSLLTPLFNSIRTLSGITPKVYGLLTKLLNVNPTQREATLIDLLQLMPHSVIDRRMRP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+ ++E   VT+   I QH        + PY+++ +D TG+I L+FF+ +   LK    
Sbjct: 61  NIACVTEGDTVTLEIIIDQHQPPPRGHNKIPYRVIAHDQTGKINLVFFHAQPLWLKKQLP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG+K+TV+GK++    +  M HP YI  + Q    PLIE VY    GL+    ++ I  A
Sbjct: 121 EGKKVTVSGKVEWFNGQFSMAHPDYIAPSEQSNQIPLIEPVYPSTAGLTAKTLRRAIQNA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L  +P+LPEWI++++ ++++F S + A   IH P    D    S AR+RLAYDELLA Q+
Sbjct: 181 LDFIPLLPEWIDENVKKQQNFSSFSVALRRIHAPIDPNDLSLESTARKRLAYDELLACQL 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + K  +G      G   +K+L  +PF  T  Q+ A++DI  D++    MLR+L
Sbjct: 241 ALGLVRLKTKSLVGTSRPSTGIYTKKLLNVLPFQLTTGQKKAVEDIANDLASPEPMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVG+GKT+VAL+AMA   E  GQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 301 QGDVGAGKTVVALMAMAQIAENSGQSALMAPTEVLARQHFSTIAPLAEKVGLQTTLLTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L  I  GQ  IIIGTHAL Q+SI Y  L L I+DEQHRFGV QR+ LT+K 
Sbjct: 361 EKGKLRINILNDIQSGQVSIIIGTHALIQNSITYNNLALTIIDEQHRFGVHQRIALTEKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P +L+MTATPIPRTLVLT+ GD+D+SKITEKP GR+PI T ++ + R+ E+IER+ + 
Sbjct: 421 NKPDMLVMTATPIPRTLVLTAFGDMDVSKITEKPMGRQPITTAMLSLKRLHELIERIAIA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L +G+K YWICP +EE    +  S+  RF  LHE F + + +IHG+MS   KE+ M SFK
Sbjct: 481 LEKGEKLYWICPLVEESTALDLTSIENRFAFLHERFGAHVGMIHGKMSTEKKEAAMASFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++L+ATTVIEVG+D+ DASIIIIE+AEHFGL+QLHQLRGRVGRG + SSCILLY  
Sbjct: 541 CGNTRILVATTVIEVGVDIPDASIIIIEHAEHFGLSQLHQLRGRVGRGNKKSSCILLYKD 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL+K + TRL++++NTEDGF IAEED + R EGE+LG KQSG+P+F IA   +H  LL +
Sbjct: 601 PLTKTAATRLNIIRNTEDGFEIAEEDWRLRGEGELLGTKQSGVPEFHIANLAVHSDLLSM 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA+  L +DP L+S +GQ++++LLYL+ +++A + +RAG
Sbjct: 661 ARKDARLFLQRDPHLSSQQGQALQLLLYLFGHDDATRLLRAG 702


>gi|49475736|ref|YP_033777.1| ATP-dependent DNA helicase recG [Bartonella henselae str.
           Houston-1]
 gi|49238543|emb|CAF27779.1| ATP-dependent DNA helicase recG [Bartonella henselae str.
           Houston-1]
          Length = 702

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/702 (48%), Positives = 458/702 (65%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           M P  + PLF  +    G+  K    L+K++N      E   IDLL   P S IDR  RP
Sbjct: 1   MLPDLIRPLFTSVRILPGMSPKIYGLLAKVLNINATQREPTIIDLLQLMPYSVIDRRMRP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E   VT+   I QH S  + + R PY++  +D TG+I L+FF+ +   LK    
Sbjct: 61  NIAFAQEGNTVTLEIIIDQHHSPPIGRNRLPYRVSAHDQTGKINLVFFHAQPPWLKKQLP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG+K+ V+GK+++   ++ MVHP +I  + Q    PLIE +Y    GLS    ++ I  A
Sbjct: 121 EGKKVIVSGKVERFNGQLSMVHPDHIAPSKQSNQMPLIEPIYPSTAGLSAKTLRRTIQNA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L  +P+LPEWIE+ + ++++F S + A   IH P    D    S AR+RLAYDELLA Q+
Sbjct: 181 LEYIPLLPEWIEESVKKQQNFSSFSVALRRIHAPIDPDDLALESTARKRLAYDELLACQL 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LMR + K  +G      G   +K+L+ +PF  T  Q+ AI+DI  D++    MLR+L
Sbjct: 241 ALGLMRLKTKSLVGTSRPPTGTYTEKLLKILPFQLTNGQKKAIQDIANDLASPEPMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVG+GKT+VAL+AMA   E  GQ+ +M P  +LA+QH+  I    +   +   ++TG 
Sbjct: 301 QGDVGAGKTVVALMAMAQIAENRGQSALMTPTEVLARQHFATIAPLAEKIGLQTVLLTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L  I+  QA IIIGTH L Q+++ Y  L L I+DEQHRFGV QRL LT K 
Sbjct: 361 EKGKLRTNILNNISSSQASIIIGTHTLIQNNVTYNNLSLAIIDEQHRFGVNQRLALTAKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P +L+MTATPIPRTLVLT+ GD+D+SKITEKP GR+PI T I+ + RIDE+IER+ V 
Sbjct: 421 HKPDMLVMTATPIPRTLVLTAFGDMDVSKITEKPMGRQPITTAILSLKRIDELIERIAVA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L +G+K YWICP +EE       S+  RF  L E F +S+ +IHG+MS   KE+ M SFK
Sbjct: 481 LEKGEKLYWICPLVEESITLELTSIESRFAMLQERFGTSVGMIHGKMSTDKKEAAMASFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTVIEVG+D+ DASIIIIE+AEHFGL+QLHQLRGRVGRGE+ SSCILLY  
Sbjct: 541 CGNIGILVATTVIEVGVDIPDASIIIIEHAEHFGLSQLHQLRGRVGRGEKKSSCILLYKD 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL+K + TRL+++++TEDGF IAEED + R EGE+LG +QSGMP+F IA   +H  LL +
Sbjct: 601 PLTKMAATRLNIIRSTEDGFKIAEEDWRLRGEGELLGTRQSGMPEFHIANLAVHGDLLLL 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR+DA+  L +DP L+S +GQ++R+LLYL+  ++A + +RAG
Sbjct: 661 ARRDARLFLQRDPHLSSEQGQALRLLLYLFGRDDATRLLRAG 702


>gi|83311566|ref|YP_421830.1| ATP-dependent DNA helicase RecG [Magnetospirillum magneticum AMB-1]
 gi|82946407|dbj|BAE51271.1| RecG-like helicase [Magnetospirillum magneticum AMB-1]
          Length = 693

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/700 (42%), Positives = 447/700 (63%), Gaps = 7/700 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFAP++T  G+G + +    +++        + +DLL++ P+  +DR + PK
Sbjct: 1   MRPQVLFPLFAPVTTLPGIGPRLAPLYQRLVG------DKVLDLLWHLPTGVVDRRFAPK 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           ++E    ++ T+T  +  H       +RPY++ ++D TG + L+FF+ + + L+    EG
Sbjct: 55  VAEAPHGKVATLTLRVDAHFP-SSSPKRPYRVRMSDETGFLHLVFFHGREDWLRKQLPEG 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+G+++   N I + HP +I    Q      +E VY L  GL+     K +  A++
Sbjct: 114 EIRVVSGQVEHFNNEIQISHPDHIVPLDQIAQVMAVEPVYGLTAGLTGRAVAKTVAAAVA 173

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           + P LPEW +   L ++++P+   A   +H+P         +PAR RLA+DELLA Q+AL
Sbjct: 174 KAPELPEWQDVHWLDRQNWPTWHAALTALHHPADEHGAIGDTPARRRLAFDELLANQLAL 233

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++R Q +K  G P+  +G +  K++  +P++ T +Q  ++ +I  DM+Q  RMLR+LQG
Sbjct: 234 AMVRAQMRKLKGRPLVGDGSLRSKVMAALPYTLTGAQSRSLAEIDADMAQPLRMLRLLQG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+AM  AVEAG QA +MAP  ILA+QHY  I    +   + V ++TG   
Sbjct: 294 DVGSGKTVVALLAMLTAVEAGCQAAMMAPTEILARQHYAGIAPLAEAAGLKVALLTGRDK 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R   L  +A G+ HI++GTHALFQ+ + +  L L ++DEQHRFGV QRL+L  K  A
Sbjct: 354 GKARDAVLAGLASGETHIMLGTHALFQEDVAFKDLALAVIDEQHRFGVHQRLELAAKGLA 413

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L+MTATPIPRTL+LT+ GD+D S++ EKP GRKPI T ++P+ R+DE++  +   +S
Sbjct: 414 VDMLVMTATPIPRTLLLTAYGDMDASRLDEKPPGRKPIDTRVVPLARLDEMVAGVGRAIS 473

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G +AYW+CP +EE + S+  +  ER   L + F   + ++HGRM    K+ VM  F  G
Sbjct: 474 GGARAYWVCPLVEESETSDLAAAEERHRHLSQVFGDRVGLVHGRMKGAAKDKVMAEFAAG 533

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG+DV  A+I++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PL
Sbjct: 534 ELDILVATTVIEVGVDVPAANIMVIEHAERFGLAQLHQLRGRVGRGTRESRCLLLYGHPL 593

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + +  RL +++ TEDGF IAEEDL+ R  GE+LG +QSG+P+F +A   +H  LL  AR
Sbjct: 594 GEIAKARLEIMRATEDGFRIAEEDLRLRGGGEMLGTRQSGLPEFRLADLAIHGELLAAAR 653

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ IL +DP+L+  RG+++R+LLYL++ + A + +R+G
Sbjct: 654 DDARLILDRDPELSGPRGEALRVLLYLFERDAAVRTLRSG 693


>gi|319408652|emb|CBI82307.1| ATP-dependent DNA helicase [Bartonella schoenbuchensis R1]
          Length = 702

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/702 (48%), Positives = 462/702 (65%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           M  +  N     + T  GV +K    L+K++N   + +E   IDLL   P S IDR  RP
Sbjct: 1   MYSNLFNLFSTSIRTLPGVNQKVYPLLAKVLNTNLSQHEPTIIDLLQLMPHSVIDRRMRP 60

Query: 60  KISEISEERIVTITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E +IVT+   I QH        R PY+++  D TG I L+FF+ +   L+    
Sbjct: 61  DIAFAPEGKIVTLEIIIDQHRPPLNSNNRSPYRVIGYDKTGSINLVFFHAQRSWLERQLP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG+K+ V+GK+++   ++ +VHP +I  + Q    PLIE +Y    GLS    K+ +  A
Sbjct: 121 EGKKVIVSGKVERFNGQLSIVHPDHIAPSEQLNQMPLIEPIYPSTAGLSARALKRAMQGA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L R+P+LPEWIEK+L +++ FPS ++A + IH P    D    S AR+RLAYDELLAGQ+
Sbjct: 181 LERIPLLPEWIEKNLKKQQQFPSFSDALHCIHAPIDPNDLALKSAARQRLAYDELLAGQL 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + K   G      G   +K+L ++PF  T +Q+ AI+DI  D++    MLR+L
Sbjct: 241 ALGLVRLKTKSLSGASRPPTGVYTEKLLESLPFQLTNAQKQAIQDIASDLASPEPMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVG+GKT+VAL+AMA   E  GQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 301 QGDVGTGKTVVALMAMAQIAENSGQSALMAPTEVLARQHFTMIAPLAEKIGLKTVLLTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L  I  G+  IIIGTHAL Q ++ Y  L L I+DEQHRFGV QRL LT K 
Sbjct: 361 EKGKSRVNILNDILSGKISIIIGTHALIQKNVTYNNLALTIIDEQHRFGVNQRLALTAKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P +L+MTATPIPRTLVLT+ GD+D+SKITEKP GRKPI T  +P+ RIDE+IER+ V 
Sbjct: 421 HKPDILVMTATPIPRTLVLTAFGDMDVSKITEKPIGRKPITTATLPLERIDELIERIAVA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L +G+K YWICP +EE +     S+  RF  LH+ F + + +IHG+MS   K + + SFK
Sbjct: 481 LEKGEKLYWICPLVEESENFQLTSIENRFAILHKRFGACVGMIHGKMSTTKKNAAIASFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L+ATTVIEVG+D+ DASIIIIE+AEHFGL+QLHQLRGRVGRGE+ SSCILLY  
Sbjct: 541 SGETCILVATTVIEVGVDIPDASIIIIEHAEHFGLSQLHQLRGRVGRGEKKSSCILLYKA 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL+K +  RL++++NTEDGF IAEEDL+ R EGE+LG +QSGMP+F IA    H  LL +
Sbjct: 601 PLTKTAAMRLNIIRNTEDGFKIAEEDLRLRGEGELLGTRQSGMPEFHIANLTAHHKLLLM 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ARKDA   L  D DL+S RGQ++R+LLYL+++++A Q +R+G
Sbjct: 661 ARKDACLFLQHDSDLSSERGQALRLLLYLFRHDDAIQLLRSG 702


>gi|56696563|ref|YP_166920.1| ATP-dependent DNA helicase RecG [Ruegeria pomeroyi DSS-3]
 gi|56678300|gb|AAV94966.1| ATP-dependent DNA helicase RecG [Ruegeria pomeroyi DSS-3]
          Length = 696

 Score =  660 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/700 (42%), Positives = 434/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +   + +      +     DLLF  P S +DR  R  I
Sbjct: 4   RPEQLFPLFAGLETLEGVGPKTAQLFAHL------DVETPRDLLFSLPYSVVDRRRRDTI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                   +T+   +  H   +  +   Y+I + D   +  L+FF+ + + LK V  EG 
Sbjct: 58  RGADLPATLTVEVTVGAHRPAR-GRGGAYRIFVEDAQADFQLVFFHARGDYLKKVLPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP +I   ++    P  E VY L  G+S     K    AL+R
Sbjct: 117 RRVVSGKVELFDGMANMVHPDHILPVAEAGEIPEFEPVYPLTQGVSQRTAFKAARSALAR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L +WI+  L  ++ +P  A+A    H P+   D   T+PAR RLAYDEL A Q+ L 
Sbjct: 177 LPDLADWIDPALRAREGWPDWADAMRAAHAPQGLDDVAATAPARMRLAYDELFAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R++ +K  GI     G +  ++L ++P+ PT +Q  AI++I  DM+   RM R+LQGD
Sbjct: 237 LARRRERKARGISSVATGALQSRVLASLPYRPTNAQARAIEEIAADMAAPARMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E ++   +   +++E++TG    
Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTEILARQHLEGLRPLAEEAGVVLELLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A RR  L  +  G   I++GTHA+FQ  +++  L L IVDEQHRFGV+QR++L +K    
Sbjct: 357 AERRAKLAALKKGDISILVGTHAVFQADVEFADLRLAIVDEQHRFGVRQRMELAEKGMNA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPI+T +I   R+DEVI+ L+  ++E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTAVISTERMDEVIDHLRRAIAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP ++E + S+  +  +RF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVDESEVSDLTAAEDRFKRLRAVLGEGVVGLVHGQMPPAEKDAAMAAFQTG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +A+I++IE AE FGLAQLHQLRGRVGRGE  S+C+L+Y PPL
Sbjct: 537 ETQVLVATTVIEVGVNVPNATIMVIERAEIFGLAQLHQLRGRVGRGEAASTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    RL VL+ TEDGF IAE DL  R  G+++G  QSG+PKF IA  E H +L+  A+
Sbjct: 597 TEGGRRRLEVLRETEDGFRIAETDLDMRGAGDLIGTAQSGLPKFRIADLERHTALMATAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L QDP+L+S RG++ RILL+L + ++A + I  G
Sbjct: 657 TDARALLAQDPELSSERGRAARILLWLMKQDQAIRLISVG 696


>gi|84686904|ref|ZP_01014788.1| ATP-dependent DNA helicase RecG [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665101|gb|EAQ11581.1| ATP-dependent DNA helicase RecG [Rhodobacterales bacterium
           HTCC2654]
          Length = 696

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/700 (42%), Positives = 431/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  G+G K +   + +      + T+  DLLF  P S +DR +R  +
Sbjct: 4   RPEILFPLFAELETLGGIGPKSAKSFAAL------DITQPRDLLFSLPYSGVDRSFRASV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           SEI     VT+   + +H      + RPY++ + D      L+FF+   + +      G+
Sbjct: 58  SEIRPPATVTVEAEVGRHLPPSA-RNRPYRVEMTDALTTFYLVFFHGNPDWISRNLPTGQ 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK+++      M HP +I    +    P  E VY L  G++  L  + + E LSR
Sbjct: 117 RRIVSGKVEEYDGIRQMPHPDHILKPGEADLIPEFEPVYHLAQGVTQKLMFRAVGEVLSR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +  L EWI+  L  ++ +P   EA  I H P+   D    +PAR RLAYDE  A Q+ L 
Sbjct: 177 VQPLIEWIDPGLKAQEHWPDWHEAVRIAHMPQGPDDLSPQAPARRRLAYDEFFAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + ++  G      G +  K+   +PF PT +QE A+ DI  DM+   RM R+LQGD
Sbjct: 237 LARARMRRGKGRASVGTGILQDKVRAALPFQPTGAQERAVADIAADMAAGQRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E ++   +   ++VE++TG    
Sbjct: 297 VGAGKTLVAFLALLVAVEAGGQGVMMAPTEILARQHLESLRPMAETAGVVVELLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR  LE +  G  H+++GTHA+FQD + Y+ L L +VDEQHRFGV +R++L +K  A 
Sbjct: 357 GERRAKLEALKRGDIHVLVGTHAVFQDDVAYHDLRLAVVDEQHRFGVTERMRLGKKGQAA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GR+PI T ++P +R+D+V+ RL+ V  +
Sbjct: 417 DVLVMTATPIPRSLSLAQYGDMDVSILDEKPPGRQPITTSVLPTSRLDDVVARLRGVAQD 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G +AYW+CP + E + S   +  ERF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GGQAYWVCPLVGESEVSELIAAEERFKHLRAALGEGVVGLVHGQMPPAEKDAAMAAFQRG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG+DV +A+I++IE AEHFGLAQLHQLRGRVGR  + S+C+LLY  PL
Sbjct: 537 ETKVLVATTVIEVGVDVPNATIMVIERAEHFGLAQLHQLRGRVGRCSKASTCLLLYQSPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    RL +++ TEDGF IAE DL+ R  G+++G  QSG+PKF++   E    L+ +A+
Sbjct: 597 TETGEKRLGIMRETEDGFRIAEADLEMRGAGDLIGTAQSGLPKFMVGDLEHQAGLMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           KDA+ +L  DPDLTS RG++ R+LL+L + +EA + I  G
Sbjct: 657 KDARKLLADDPDLTSTRGEAARVLLWLMRQDEAIRLISVG 696


>gi|126737639|ref|ZP_01753369.1| ATP-dependent DNA helicase RecG [Roseobacter sp. SK209-2-6]
 gi|126721032|gb|EBA17736.1| ATP-dependent DNA helicase RecG [Roseobacter sp. SK209-2-6]
          Length = 696

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/700 (42%), Positives = 435/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA   T +GVG K +  L +I            DLLF  P S +DR  R  I
Sbjct: 4   RPEVLFPLFAAADTLKGVGPKIAQNLQQI------GLETPRDLLFLLPYSVLDRRRRSTI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +    I T+   I  H   + +    Y+I + D   E  L+FF+ ++  L+    EG 
Sbjct: 58  RGLELPGIATVEVTIGSHRPARNKGG-AYRINVTDQEEEFQLVFFHGRSRYLEAQCPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++   ++  + P  E VY L  G++     K +  AL+R
Sbjct: 117 RRLVSGKLELFDGMAQMVHPDHMLPLAEAEDIPEFEPVYPLTHGVTQKTMTKAVQSALTR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+  L  ++ +PS  EA    H P+  +D +  +  R RLAYDEL A Q+ L 
Sbjct: 177 LPDLSEWIDPALCSREGWPSWREALQQAHVPQGQEDLDPEASPRARLAYDELFAHQVTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R+Q ++  G      G +  ++L  +P+ PT +Q  AI++I  DM++  RM R+LQGD
Sbjct: 237 LARQQERQRKGRASLATGHLQSRVLSALPYRPTGAQARAIEEISADMARDIRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP GILAQQH E +K   ++  +++E++TG    
Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTGILAQQHLEGLKPLAEDAGVVLEVLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RRK L+ +A G   I++GTHA+FQ  + +  L L +VDEQHRFGV+QR++L +K    
Sbjct: 357 TERRKKLDALARGDIQILVGTHAVFQQDVAFKDLRLAVVDEQHRFGVRQRMELAEKGQGA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+++S + EKP GRKP+KT ++   R+ EV+E L+  + E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMEVSVLDEKPPGRKPVKTAVVATERMQEVVEHLRGAIEE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP + E +  +  +  ERFN L        + ++HG+M   +K++ M++F +G
Sbjct: 477 GRQCYWVCPLVGESEVMDLTAAEERFNHLRAALGEGQVGLVHGQMPPAEKDAAMEAFVSG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+LLY PPL
Sbjct: 537 KTKVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGSAQSTCLLLYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL VL+ TEDGF I+E DL+ R  G+++G  QSG+PKF IA  E    L+ +A+
Sbjct: 597 SEGGRRRLEVLRETEDGFRISETDLQMRGAGDVIGTAQSGLPKFRIADLEKQAPLMALAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L +DPDLTS RGQ++R+LL+L + ++A + I  G
Sbjct: 657 SDARALLAKDPDLTSERGQAVRVLLWLMKQDQAIRLISVG 696


>gi|49474349|ref|YP_032391.1| ATP-dependent DNA helicase recG [Bartonella quintana str. Toulouse]
 gi|49239853|emb|CAF26247.1| ATP-dependent DNA helicase recG [Bartonella quintana str. Toulouse]
          Length = 702

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/702 (46%), Positives = 456/702 (64%), Gaps = 2/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNA-NETRFIDLLFYHPSSFIDRHYRP 59
           M P  + PLF  +    G   K    L+K++N   A  E   IDLL   P S IDR  +P
Sbjct: 1   MLPDLIRPLFTSVRALPGTSPKICALLAKVLNINPAQREPTVIDLLQLMPQSVIDRRMQP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
            I+   E   VT+   + QH    +++ R PY++  +D TG+I L+FF+ +   LK    
Sbjct: 61  SIAFAQEGITVTLEIIVDQHHPPPIERNRLPYRVSAHDQTGKINLVFFHAQRPWLKKQLP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG+K+ V+GK+++   ++ M+HP +I  + Q    PLIE VY    GLS    ++ I  A
Sbjct: 121 EGKKVIVSGKVERFNGQLSMIHPDHIAPSEQSNQMPLIEPVYPSTAGLSAKTLRRTIQNA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L  +P+LPEWIE+ + ++++F S + A + IH P    D    S AR+RLAYDELLA Q+
Sbjct: 181 LEYIPLLPEWIEESVKKQQNFSSFSVALHRIHTPINPDDLSLKSAARKRLAYDELLACQL 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+R + K   G     +G   +K+L+ +PF  T  Q+ AI+DI  D++    MLR+L
Sbjct: 241 ALGLVRLKTKSLSGASRPPKGTYTKKLLKALPFQLTNGQKKAIQDIANDLASPEPMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVG+GKT+VAL+A A   E  GQ+ +MAP  +LA+QH+  I    +   +   ++TG 
Sbjct: 301 QGDVGAGKTVVALMASAQIAENSGQSALMAPTEVLARQHFATIAPLAEKIGLQTVLLTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L+    GQA IIIGTHAL Q+++ Y  L L I+DEQHRFGV QRL LT K 
Sbjct: 361 EKGKLRANILKDTLSGQASIIIGTHALIQNNVAYKNLALTIIDEQHRFGVHQRLALTAKG 420

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P +L+MTATPIPRTLVLT+ GD+DIS+ITEKP GR+PI T I+P+ RI E++ER+ + 
Sbjct: 421 NKPDMLVMTATPIPRTLVLTAFGDMDISQITEKPTGRQPITTAILPLQRIHELLERIAIA 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L +G+K YWICP +EE       S+  RF  L E F   + +IHG+MS  +KE+ M SFK
Sbjct: 481 LEKGEKLYWICPLVEESTTLELTSIENRFAILREQFGERVGVIHGKMSTDEKEAAMTSFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTVIEVG+D+ DASII+IE+AEHFGL+QLHQLRGRVGRGE+ SSCILLY  
Sbjct: 541 CGNICILVATTVIEVGVDIPDASIIVIEHAEHFGLSQLHQLRGRVGRGEKKSSCILLYKN 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL+K +  RL++++NTEDGF IAEED + R EGE+LG +QSGMP+F IA   +H  LL I
Sbjct: 601 PLTKTAAKRLNIIRNTEDGFKIAEEDWRLRGEGELLGTRQSGMPEFHIANLAVHSDLLSI 660

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR+DA+  L  D + +S RG+++R+LL L++ ++A + ++AG
Sbjct: 661 ARRDARLFLQHDANFSSKRGKALRLLLDLFRRDDAIRLLQAG 702


>gi|144898256|emb|CAM75120.1| ATP-dependent DNA helicase recG [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 693

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/700 (43%), Positives = 449/700 (64%), Gaps = 7/700 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPS LNPLFAP++T  G+G K + F  ++         R +DLL++ PS  IDR + PK
Sbjct: 1   MRPSLLNPLFAPITTLAGIGPKLAPFYERLAGG------RVVDLLWHLPSGVIDRRFAPK 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           ++E    ++ TIT  +  H       +RPY++  +D TG   L+FF+ + + L+    +G
Sbjct: 55  LAEAPAGKVATITVQVEAHFP-SSSPKRPYRVRCSDETGFAHLVFFHGREDWLRRQLPDG 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               ++G ++   + I + HP +I   ++      IE VY L  GL+  +  K I  A+ 
Sbjct: 114 EWRVISGVVEHFNDGIQITHPDHIVPLAEREQVMNIEPVYPLTGGLTARMVAKTIRTAVD 173

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           + P +PEW +     + ++PS  +A + +H P+  +     +PAR RLA+DELLA Q+AL
Sbjct: 174 QAPQMPEWQDAAWFARNAWPSWRQALDSLHRPQSEQAVIEDNPARRRLAFDELLANQLAL 233

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           +++R   +K  G PI V   +  ++L  +PF+ T +Q  ++ +I  DM++  RMLR+LQG
Sbjct: 234 MMVRAHMRKLKGRPIPVSTHLRPQVLAALPFTLTAAQTRSLAEIDADMAEPLRMLRLLQG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+AM  AVE+G QA +MAP  ILA+QH + I    +   + V ++TG   
Sbjct: 294 DVGSGKTVVALLAMLNAVESGAQAALMAPTEILARQHMDTIAPLVEGAGLRVALLTGRDK 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R   L  +A G+  IIIGTHALFQ+ + Y  L   ++DEQHRFGV QRL+L  K  A
Sbjct: 354 GKARDAILADLAAGRVQIIIGTHALFQEDVAYADLAFAVIDEQHRFGVHQRLELASKGQA 413

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L+MTATPIPRTL+LTS GD+D S++ EKP GR+P+ T  +P++R+DEV++ +   + 
Sbjct: 414 VDMLVMTATPIPRTLLLTSYGDMDASRLDEKPPGRQPVSTRALPLSRMDEVVDGIGRAVK 473

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + YW+CP +E+ + S+  +  ER   L + F   + ++HG+M  + K+ VM  F  G
Sbjct: 474 AGARVYWVCPLVEDSETSDLAAAEERHRHLSQVFGDGVGLVHGKMKGLAKDKVMADFAAG 533

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG++V +A+I++IE+AE FGLAQLHQLRGRVGRG   SSC+LLY  PL
Sbjct: 534 QLSVLVATTVIEVGVNVPEATIMVIEHAERFGLAQLHQLRGRVGRGSGASSCLLLYGAPL 593

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N+  RL +++ TEDGF+IAEEDL+ R  GEILG +QSG+P+F +A   LH  LL  AR
Sbjct: 594 SENAKARLEIMRATEDGFVIAEEDLRLRGGGEILGTRQSGLPEFKLADLALHGDLLAAAR 653

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA  IL +DP+LTS RGQ++R+LLYL++ + A   +R+G
Sbjct: 654 DDAALILARDPELTSERGQALRVLLYLFERDAAVHTLRSG 693


>gi|254477381|ref|ZP_05090767.1| DEAD/DEAH box helicase domain protein [Ruegeria sp. R11]
 gi|214031624|gb|EEB72459.1| DEAD/DEAH box helicase domain protein [Ruegeria sp. R11]
          Length = 696

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/700 (42%), Positives = 430/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA + T +GVG K +  LS+I            DLL+  P S +DR  R  I
Sbjct: 4   RPEILFPLFAGVETLQGVGPKTAQHLSQIA------IESPRDLLYSLPYSVVDRRRRTTI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +    + T+   I  H   + +    Y+I + D   E  L+FF+ ++  L+    EG 
Sbjct: 58  QGLDFPSVATVEVTIGTHRPARNKGG-AYRINVTDAETEFQLVFFHGRSRYLEAQLPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++   +   + P  E VY L  G+S     K    AL R
Sbjct: 117 RRVVSGKLELFDGLAQMVHPDHMVALADADDIPDFEPVYHLTHGVSQKTMFKAAQSALQR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP LPEWI+   ++K+ +P+  +A    H+P    D    +PAR RLAYDEL + Q+ L 
Sbjct: 177 LPDLPEWIDPSQMRKEEWPAWQDALTKSHSPEGPDDLMAEAPARARLAYDELFSHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R+Q +   G      G++  ++L  +P+ PT +Q  AI++I  DM++  RM R+LQGD
Sbjct: 237 LARQQDRALPGRVSLATGQLQSRVLSALPYRPTGAQARAIEEISADMARPERMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E ++   ++  +++EI+TG    
Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTEILARQHLEALRPLAEDAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R+     +A G  HI++GTHALFQ  + +  L L IVDEQHRFGV+QR++L +K    
Sbjct: 357 RERKAKCAALARGDIHILVGTHALFQPDVAFRDLRLAIVDEQHRFGVRQRMELAEKGKGA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L LT  GD+++S + EKP GRKPIKT II   R+DEV+  L+  + E
Sbjct: 417 DVLVMTATPIPRSLALTQYGDMEVSVLDEKPPGRKPIKTAIISTERMDEVVSHLRRAIDE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE +  +  +  ERF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVEESEVMDLTAAEERFKRLRAVLGDGVVGLVHGQMPPAEKDAAMAAFQAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+LLY  PL
Sbjct: 537 ETKVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGSADSTCLLLYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           SK    RL +L+ TEDGF I+E DL+ R  G+++G  QSG+P+F IA  E    L+ +A+
Sbjct: 597 SKGGQKRLEILRETEDGFRISETDLEMRGAGDVIGTAQSGLPRFRIADLERQAGLMSVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDL+S RGQ+ R+LL+L + ++A + I  G
Sbjct: 657 SDARALLASDPDLSSPRGQAARVLLWLMKQDQAIRLISVG 696


>gi|296445812|ref|ZP_06887764.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
 gi|296256640|gb|EFH03715.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
          Length = 700

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/701 (43%), Positives = 441/701 (62%), Gaps = 2/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPS L+PLF   +   G+G K +    +++      ETR +D+LF+ P + +DR  RP 
Sbjct: 1   MRPSILDPLFGRAAALPGIGPKTAKLFDRLLAAPGK-ETRLVDILFHLPINLLDRSLRPT 59

Query: 61  ISEISEERIVTITGYISQHSSFQ-LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+E   ++IV +   +++H   Q    + PYKIL+ D TG+  L+FF    + ++     
Sbjct: 60  IAEAPFDQIVVLKVRVAEHRKPQGRYAKAPYKILVEDDTGDCELVFFLANADWIERSLPL 119

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V+GK++    R  +VHP  +   +     P  EAV+ L  GL     ++ +  AL
Sbjct: 120 GATRWVSGKLELYDGRRQIVHPDRVLDEAGIAKLPPAEAVHGLTEGLQERFVQRAVEGAL 179

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            RLP LPEW +  +L     P  A A    H+P    D E    AR+RLA DELL+ Q+A
Sbjct: 180 ERLPSLPEWQDPSVLAANKLPDFATALREAHHPTSRADVEPMGKARQRLALDELLSQQLA 239

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R + K+  G     +G+I Q +   +PF+ T +Q  A+ +I  D+S   RMLR+LQ
Sbjct: 240 LRLLRAKMKRLPGRENAGDGRITQALEAALPFALTGAQTRALAEIRADLSSSRRMLRLLQ 299

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+AMA+ VE G QA +MAP  ILA+QHYE +    +   + + ++TG  
Sbjct: 300 GDVGSGKTIVALLAMASVVECGRQAALMAPTEILARQHYEKLLPLAEGVGLRLALLTGRA 359

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             + R +  E IA G+A I+IGTH+L Q  + +  L L ++DEQHRFGVQQRL L  K  
Sbjct: 360 KASERARLHETIAKGEADIVIGTHSLVQSDLAFADLGLAVIDEQHRFGVQQRLALGAKGE 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  VL+MTATPIPR+L LT  GD+D S + EKP GR PI T  +P++RI +V+E ++  L
Sbjct: 420 AADVLVMTATPIPRSLALTYFGDMDSSVLDEKPPGRTPIDTRALPVSRIGDVVEGVRRAL 479

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G + YW+CP +EE +E +  +  +R + L   F   + ++HGRM   ++++ M++FK 
Sbjct: 480 GSGARVYWVCPLVEENEELDLAAAQDRHDDLTRIFGEIVGLVHGRMKGAERDAAMEAFKA 539

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GT ++L+ATTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG   SSC+LLY  P
Sbjct: 540 GTTRILVATTVIEVGVDVPEATVMVIEHAERFGLAQLHQLRGRVGRGSGKSSCLLLYKGP 599

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + +  RL  L+ TEDGF IAEEDL+ R EGE+LG +QSG+P F +A    H  LL  A
Sbjct: 600 LGETAKARLVTLRQTEDGFRIAEEDLRLRGEGEVLGSRQSGLPGFRLADIAAHARLLATA 659

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R DA+ IL +DP+L S RG+++R+LLYL++ +EA + +RAG
Sbjct: 660 RDDAELILRRDPELASPRGEALRVLLYLFERDEAVRLLRAG 700


>gi|90419665|ref|ZP_01227575.1| ATP-dependent DNA helicase RecG [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336602|gb|EAS50343.1| ATP-dependent DNA helicase RecG [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 700

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/701 (46%), Positives = 464/701 (66%), Gaps = 2/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPS L+PLFA ++T  GVG K +  L  ++    A E R  DLLF+ PS  IDR  R +
Sbjct: 1   MRPSILDPLFAAVTTLEGVGPKVAAQLQTLLVANGA-EVRVRDLLFHLPSGLIDRRKRAE 59

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   E  IVT+T  I +H +    ++  PY++   D TGEI L +F  ++  L+ +   
Sbjct: 60  IATAPEGGIVTLTVRIDRHQAPGRGQKSVPYRVFAQDETGEIALTYFRGQSAWLEKLLPV 119

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G  + V+G+++    R  MVHP ++    +     L+E VY +  GLS  L +K I E L
Sbjct: 120 GETMIVSGRVEWFNGRPSMVHPDFVATLEEAETLSLVEPVYPMTAGLSPKLLRKAIAETL 179

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            +LP L EWI+  ++ ++++P I  A   +H+P    D     PA  RLAYDE LA Q+A
Sbjct: 180 EKLPALDEWIDPAVVAREAYPGIGSALRRLHDPEDETDIAHAGPAWSRLAYDEYLASQLA 239

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L R++ KK  G P+   G++A  +   +PF+ T+ QE+AI +I  DM+  +RMLR+LQ
Sbjct: 240 LALSRQRMKKARGRPLVGTGRMAGLLRAALPFTLTEGQEAAIAEIHTDMAAPDRMLRLLQ 299

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+AMAAA EAG Q+ ++AP  ILA+QH++ + K  +   + + ++TG  
Sbjct: 300 GDVGSGKTVVALMAMAAAAEAGAQSALLAPTEILARQHHDGLSKLCEAAGLSIVLLTGRD 359

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   L  IA G+  I++GTHALFQ+ + Y  L LV+VDEQHRFGV QRL LT K  
Sbjct: 360 TGRARAAKLAAIAAGEVQIVVGTHALFQEGVDYADLGLVVVDEQHRFGVHQRLSLTAKGR 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L+MTATPIPRTLVL + GD+D+S+++ KPAGRKPI TV +P+ R+ +++ R    +
Sbjct: 420 GADLLVMTATPIPRTLVLAAFGDMDVSRLSGKPAGRKPITTVAVPMERLSDIVGRAGSAM 479

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G++ YW+CP +EE ++S+  +  ERF  L  HF   I ++HGRMS  +K++ M  FK 
Sbjct: 480 DAGERLYWVCPLVEESEKSDLMAAEERFRQLQAHFGDRIGLVHGRMSGEEKDAAMADFKA 539

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +L++ATTVIEVG+DV DA+II+IE+AE FGL+QLHQLRGRVGRG + SSC+LLY  P
Sbjct: 540 GRTQLVVATTVIEVGVDVPDATIIVIEHAERFGLSQLHQLRGRVGRGSKASSCVLLYRAP 599

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + +  R+ V++ TEDGF IAEEDLK R EG++LG +QSGMP F IA  E H  L+E+A
Sbjct: 600 LGETASARIKVMRETEDGFRIAEEDLKLRGEGDLLGTQQSGMPYFRIASMEHHARLMEVA 659

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R DA+ ILT+DP+LTS RG+++R LLYL+  +EA + +R+G
Sbjct: 660 RDDARMILTRDPELTSPRGEALRALLYLFGKDEAIRLLRSG 700


>gi|254467243|ref|ZP_05080654.1| DEAD/DEAH box helicase domain protein [Rhodobacterales bacterium
           Y4I]
 gi|206688151|gb|EDZ48633.1| DEAD/DEAH box helicase domain protein [Rhodobacterales bacterium
           Y4I]
          Length = 696

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/700 (42%), Positives = 437/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA   T +GVG K +  L++I      +     DLLF  P S +DR  R  I
Sbjct: 4   RPEILFPLFAGAETLQGVGPKTAQNLTQI------DIETPRDLLFSLPYSVVDRRRRDTI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +    ++T+   I +H   + +    Y++ + D   E  L+FF+ ++  L+    EG 
Sbjct: 58  RGVDLPAVLTVEVTIGRHRPARSRGG-AYRVHVEDAETEFQLVFFHGRSRYLEAQLPEGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++    +    P  E VYSL  G+S     K    ALSR
Sbjct: 117 RRVVSGKLELFDGIAQMVHPDHMLPVEEAHEIPEFEPVYSLTHGVSQKTMYKAAQSALSR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P L EWI+   + ++++P+  +A    H P+   D    SPAR RLAYDEL + Q+ L 
Sbjct: 177 MPHLEEWIDPAQMLRENWPAWHDALQSAHAPQGPDDLSPQSPARARLAYDELFSHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R+  +K  GI  +  G++  ++L+ +P+ PT +Q  AI++I  DM+   RM R+LQGD
Sbjct: 237 LARQTERKSRGIESHATGRLQSRVLKALPYRPTNAQARAIEEISADMASPKRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP GILAQQH E +    ++  +++EI+TG    
Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTGILAQQHMEGLAPLAEDAGVVIEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R+  L  +  G   I++GTHA+FQ  +++  L L IVDEQHRFGV+QR++L +K    
Sbjct: 357 AERKAKLAALKRGDIQILVGTHAVFQQDVEFRDLRLAIVDEQHRFGVRQRMELAEKGKGA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKP+KT +I   R+ EV++ L+  ++E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPVKTAVISTERMQEVVDHLRKAIAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP ++E + S+  +  ERF  L       IA ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVDESELSDLTAAEERFKHLRAVLGEGIAGLVHGQMPPAEKDAAMAAFQEG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+L+Y PPL
Sbjct: 537 KTKVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGSAESTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    RL VL+ TEDGF I+E DL+ R  G+++G  QSG+P+F IA  E    L+E+A+
Sbjct: 597 TEGGRKRLEVLRETEDGFRISETDLQMRGAGDMIGTAQSGLPRFRIADLERQAGLMEVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L S RG++ R+LL+L + ++A + I  G
Sbjct: 657 SDARALLAADPKLESARGKAARVLLWLMKQDQAIRLISVG 696


>gi|86138406|ref|ZP_01056980.1| ATP-dependent DNA helicase RecG [Roseobacter sp. MED193]
 gi|85824931|gb|EAQ45132.1| ATP-dependent DNA helicase RecG [Roseobacter sp. MED193]
          Length = 696

 Score =  650 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/700 (42%), Positives = 435/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA   T +GVG K +  L++I            DL F  P S +DR  R  I
Sbjct: 4   RPEILFPLFAGAETLKGVGPKTAQSLAQI------GLETPRDLAFSLPHSILDRRRRDTI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +    I T+   + +H   + +    Y+I + D   E  L+FF+ ++  L+    EG 
Sbjct: 58  KGLDLPAIATVEVEVGRHLPARNRGG-AYRINVADQEVEFQLVFFHGRSRYLEAQCPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++   ++  + P  E VY L  G++     K  + AL R
Sbjct: 117 RRLVSGKVELFDGVAQMVHPDHMLPLAEAEDIPEYEPVYPLTHGVTQKTMTKAALSALER 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+ +  +++ +P+  EA N  H+P+  +D    +P R RLAYDEL A Q+ L 
Sbjct: 177 LPELAEWIDPEQARREGWPAWKEALNAAHHPQSLEDLSPEAPIRTRLAYDELFAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R+  +K  GI     G++   +L  +P+ PT +QE AI++I +DM++  RM R+LQGD
Sbjct: 237 LARQAERKSPGIVSEATGRLQAPVLAALPYRPTGAQERAIREISEDMARDRRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A+  AVEAGGQ V+MAP GILAQQH+E ++   +   +++E++TG    
Sbjct: 297 VGSGKTLVAFMALLVAVEAGGQGVMMAPTGILAQQHFEGLRPLAEQAGVVLELLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A RR  L  +  G   I++GTHA+FQ  + + +L L IVDEQHRFGV+QR++L +K    
Sbjct: 357 AERRAKLAALEAGDIQILVGTHAVFQQDVVFRRLHLAIVDEQHRFGVRQRMELAEKGKGA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKP+KT ++   R++EV+  L+  + E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPVKTAVLSTERMEEVVNHLRRAIGE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP + E +  +  +  ERF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVGESEVMDLIAAEERFKHLRATLGEGVVGLVHGQMPPAEKDAAMAAFQKG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+L+Y PPL
Sbjct: 537 ETKVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGSAESTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL VL+ +EDGF I+E DL+ R  G+++G  QSG+P+F IA  E   SL+ +A+
Sbjct: 597 SEGGRRRLEVLRESEDGFKISETDLQMRGAGDVIGTAQSGLPRFHIADLERQASLMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +LT DP L S RGQ+ R+LL+L + ++A + I  G
Sbjct: 657 SDARSLLTMDPGLQSDRGQAARVLLWLMKQDQAIRLISVG 696


>gi|319405607|emb|CBI79230.1| ATP-dependent DNA helicase [Bartonella sp. AR 15-3]
          Length = 701

 Score =  650 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/701 (47%), Positives = 452/701 (64%), Gaps = 1/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           M  S LNPLF P+ST  G+  +    L+K++N      E   IDLL   P S IDR  +P
Sbjct: 1   MHSSLLNPLFTPISTLPGINTRICSLLAKVLNINLTQREPTLIDLLRLMPHSVIDRRKQP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
            I+   E  IVT+   I QH       + PY+++ +D T  I L+FF+ +   L+    E
Sbjct: 61  GIAFAQEGSIVTLEVTIDQHKPPTNHNKSPYRVIGHDQTSTINLIFFHAQRSWLEKQLPE 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G+K+ ++GK+++ K ++ M+HP +I  + Q    P IE +Y    GLS    ++ + +AL
Sbjct: 121 GKKVIISGKVERFKGQLSMIHPDHIVFHEQLDQMPFIEPIYPSTAGLSTKTLRRAMQKAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             +P LPEWIE+ + ++ +F S   +   IH P    D    S AR+RLAYDE  A QIA
Sbjct: 181 EYIPSLPEWIEESIKKEHNFSSFPVSLRRIHAPINPDDLALESTARKRLAYDEFFANQIA 240

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R + K   G      G   +K+L  +PF  T  Q  +IKDI  D++    MLR+LQ
Sbjct: 241 LGLVRLKTKLFSGTSRPPTGFYTKKLLEALPFQLTSGQIQSIKDIANDLASPTPMLRLLQ 300

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VAL+A+A   E  GQ+ +M P  +LA+QH+  I    +   +   ++TG  
Sbjct: 301 GDVGAGKTIVALMAIAQIAENSGQSALMVPTEVLARQHFATITPLAEKIGLQTVLLTGRE 360

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   L+ I  G+A IIIGTHAL Q+++ Y  L L I+DEQHRFGVQQRL LT+K  
Sbjct: 361 KGKVRANILDTILSGEASIIIGTHALIQENVTYNNLALAIIDEQHRFGVQQRLTLTEKGN 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P +L+MTATPIPRTLVLTS GD+D+S+IT+KP GR+PIKT  I   RI+E+IER+   L
Sbjct: 421 KPDILVMTATPIPRTLVLTSYGDMDVSQITDKPTGRQPIKTATISSERINELIERIATAL 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            + +K YWICP +EE       S+  RF SL + F S + +IHG+MS  +KE+ M SFKN
Sbjct: 481 QKKEKIYWICPLVEESTNLELTSIESRFASLQKRFGSCVGMIHGKMSTDEKEAAMTSFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+ATTVIEVG+D+ DASII+IE+AEHFGLAQLHQLRGRVGRG++ SSCILLY  P
Sbjct: 541 ANIYILVATTVIEVGVDIPDASIIVIEHAEHFGLAQLHQLRGRVGRGDKKSSCILLYKAP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+K +  RL++++NTEDGF IAEEDL  R EGE+LG +QSGMP+F IA   +H  LL IA
Sbjct: 601 LTKAAEARLNIMRNTEDGFKIAEEDLLLRGEGELLGTRQSGMPEFYIANLAVHRELLFIA 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +K+A   L  DP+L+S +GQ+IR+LLYL+  ++A Q +RAG
Sbjct: 661 KKNAHLFLQHDPNLSSEQGQAIRLLLYLFGRDDALQLLRAG 701


>gi|260576788|ref|ZP_05844773.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
 gi|259021040|gb|EEW24351.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
          Length = 695

 Score =  650 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/700 (41%), Positives = 423/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PL+A L T  GVG K +   + +         R  DLLF  P S IDR  +  +
Sbjct: 3   RPEQLFPLYADLETLDGVGPKTARAFAAL------GVERPKDLLFLLPHSGIDRSRKASV 56

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            ++     VT+   +  H      K RPY++++ D   E  L+FF+ + + L  +   G+
Sbjct: 57  RDVVPPCTVTVEVTVGGHFP-PRSKGRPYRVMVRDEAFEFQLVFFHARADYLTKLLPTGQ 115

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           K  V+G+++       MVHP ++    +    P  E VY L  GL+     K    AL+R
Sbjct: 116 KRLVSGRVEIFDGVAQMVHPDHVLRPEEAGELPPFEPVYPLTAGLTQKQVAKAAQSALAR 175

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P LPEWI+  L  ++ +P    A   +H PR A D   T+P R RLAYDEL A Q+ L 
Sbjct: 176 APQLPEWIDGPLKLREGWPDWHAAITAVHAPRTAADIALTAPYRLRLAYDELFAHQLTLS 235

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G+     G +  ++L ++P++ T +Q  A+ +I  DM+   RM R+LQGD
Sbjct: 236 LARASLRRGKGVASLGTGILQARVLASLPYAATAAQTRAVAEIAADMATPLRMNRLLQGD 295

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A+  AVE+GGQ V+MAP  ILA+QH E +    +   I + ++TG    
Sbjct: 296 VGSGKTLVAFLALLVAVESGGQGVMMAPTEILARQHLEILSPLAKAAGIHLALLTGRDKG 355

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           + R   L  +A G+  +++GTHA+FQ  + ++ L L +VDEQHRFGV QR++L  K TA 
Sbjct: 356 SDREAKLADLAAGRIDVLVGTHAVFQKDVHFHDLRLAVVDEQHRFGVAQRMELGAKGTAA 415

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L S GD+D+S + EKPAGRKP+KT +I   RIDEV+  L   ++E
Sbjct: 416 DVLVMTATPIPRSLALASYGDMDVSVLDEKPAGRKPVKTALITTARIDEVVAHLTRAVAE 475

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +E+ +  ++ S   RF  L        + ++HG+M   DK++ M SF  G
Sbjct: 476 GRQVYWVCPLVEDSELVDYASAEARFQQLRAALGEGVVGLVHGQMPPADKDAAMASFVAG 535

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+L+Y  PL
Sbjct: 536 KTAVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLMYQAPL 595

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL+ L++TEDGF IAEEDL  R  G+++G  QSG+PKF +A  E   +L+ +A+
Sbjct: 596 SEGGMRRLTTLRDTEDGFRIAEEDLAMRGAGDLIGTAQSGLPKFRVADLERQSALMAVAQ 655

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L +DP L S RG++ R+LL+L   + A + I  G
Sbjct: 656 SDARRLLAEDPGLQSPRGKAARLLLWLLDQDRAIKLISVG 695


>gi|300023169|ref|YP_003755780.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524990|gb|ADJ23459.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 704

 Score =  650 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/703 (44%), Positives = 447/703 (63%), Gaps = 4/703 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSK-IINCGNANETRFIDLLFYHPSSFIDRHYRP 59
           MRPSFLNPLFA   T  G+G ++ L L K +       E R IDLL++ P+  IDR   P
Sbjct: 1   MRPSFLNPLFASAQTISGIGPRFILLLKKCLALPPGVAEPRVIDLLWHMPTGIIDRRAEP 60

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
           +++      IVT+   + +H       R+ P+K+   D TG I L+FF+ + + ++    
Sbjct: 61  QLASAVPGSIVTLQLRVLKHKPAPRGNRKAPHKVTCEDDTGRIDLVFFHAERKFIEKQLP 120

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           EG    V+G+I++    + M HP YI       + P++E VY L  GLS  +  K   +A
Sbjct: 121 EGEIRFVSGRIERYGEALQMAHPDYIVAPEARDDLPMLEPVYPLTAGLSGKIMVKAARQA 180

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           + R+P LPEW E   L+ + +P+   A N IH P  A D    +   +RLAYDELLAGQ+
Sbjct: 181 VDRVPELPEWQESRWLEARGWPAFKTAINRIHRPLDAPDVSNGAGPWQRLAYDELLAGQL 240

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           A  L+R+  K E G  +  +G I QKI   +PF  T SQ++A+ +I  D++  +RMLR+L
Sbjct: 241 AFALVRQNMKAERGRRLAGKGDIRQKIADALPFKLTGSQQTALAEISDDLAASHRMLRLL 300

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL+ MA A+EAG QA +MAP  +LA+QH E I    +   + + ++TG 
Sbjct: 301 QGDVGSGKTVVALMTMAVAIEAGAQAALMAPTEVLARQHQETIAPLAEAAGLRIALLTGR 360

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   LER+A G+  I+IGTHALFQ  + +  L L ++DEQHRFGV QRL L  K 
Sbjct: 361 EKGKVRDAILERLASGETDILIGTHALFQSDVVFKDLALAVIDEQHRFGVHQRLALQAKG 420

Query: 419 TAPH--VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                 VL+MTATPIPRTL++T  GD+D+SK+TEKPAGRKPI T  +P+  ++ ++ER++
Sbjct: 421 ANNDTNVLVMTATPIPRTLLMTHYGDLDVSKLTEKPAGRKPITTKALPLESLERLVERIR 480

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             L+EG + YW+CP IE  + ++  +  ERF  L + F   + ++HG +S  +K+  M +
Sbjct: 481 AQLAEGAQVYWVCPLIESSELTDLAAAEERFAHLRQIFGEGVGLLHGALSAKEKDETMAA 540

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  GT K+L+ATTVIEVG++V +A+I++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y
Sbjct: 541 FAEGTIKILVATTVIEVGVNVPNANIMVIEHAERFGLAQLHQLRGRVGRGSRESFCMLVY 600

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PL + +  RL +++ TEDGF IAE+DL+ R  GEILG +QSG P F +A+   +D+LL
Sbjct: 601 KAPLGETAGQRLKMMEETEDGFKIAEKDLELRGGGEILGARQSGAPGFRVAEVPGYDTLL 660

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
             A  DA  IL  DP+LTS RGQ++R LLY+++ +EA +  RA
Sbjct: 661 AAASDDAALILGSDPNLTSPRGQALRTLLYVFECDEAVRLFRA 703


>gi|209885335|ref|YP_002289192.1| ATP-dependent DNA helicase RecG [Oligotropha carboxidovorans OM5]
 gi|209873531|gb|ACI93327.1| ATP-dependent DNA helicase RecG [Oligotropha carboxidovorans OM5]
          Length = 704

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/706 (43%), Positives = 444/706 (62%), Gaps = 8/706 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFAP+++  GVG K       +++   +   R +DLL + PS+ IDR  +PK
Sbjct: 1   MRPPILNPLFAPITSLPGVGPKQDKLFRYLLDR--SETPRIVDLLLHLPSNVIDRRAQPK 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I + +   +VT+   + +H      + R PY I  +D TG + L +F  +   L  +   
Sbjct: 59  IRDATPGTVVTLKVTVDRHRPAPPGRSRAPYTIYASDETGTVMLTYFRPQGGYLDKLLPV 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V+G  +     + MVHP  +           I+ VY L  GL++   ++ + +AL
Sbjct: 119 GEVRYVSGTAQMFDGMLQMVHPERVVDEEGFAKLSGIDPVYPLTEGLAIGSMRRAMAQAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           ++LP LPEWI  +++++ SFP  A A + +H P +  D   + P   RLAYDELLA Q+A
Sbjct: 179 TKLPQLPEWIGPEVVRRCSFPGFATALHHLHQPDEITDILPSGPFWSRLAYDELLANQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G + +KI+  +P++ T SQ+ A++ I +D+ +  RMLR+LQ
Sbjct: 239 LALVRAQLRRPAGTRHAGDGHLRRKIIDALPYALTSSQQEAVRAIAEDLGKPLRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  E G Q+ +MAP  ILA+QH   I    +   + V I+TG  
Sbjct: 299 GDVGSGKTVVALLAAAAVAEEGRQSALMAPTEILARQHIATIAPLAERAGLRVAILTGRD 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR  LE++A+G+  +++GTHAL QD + +  L L IVDEQHRFGV++RL LT K  
Sbjct: 359 KGKDRRDILEQLANGEIDLLVGTHALIQDEVIFKSLALAIVDEQHRFGVRERLLLTDKGE 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  +L+++ATPIPRTLV+T  GD+DIS++ EKPAGR+PI T ++P++R+ E+IE L   L
Sbjct: 419 AVDMLVLSATPIPRTLVMTYFGDMDISELREKPAGRQPIDTRVVPVSRLGEIIEALGRAL 478

Query: 480 SEGKKAYWICPQIEEKK-----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             GK+ YWICP +EE       +       +RF SL + F   + ++HG+M   +K++ M
Sbjct: 479 KAGKRVYWICPLVEESDNGLGTDMGLIDATQRFESLQKTFGDVVGLVHGKMKPKEKDAAM 538

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G  +LL+ATTV+EVG+DV +A+I++IENAE FGL+QLHQLRGRVGRG E S+CIL
Sbjct: 539 ARFAAGETQLLVATTVVEVGVDVPEATIMVIENAERFGLSQLHQLRGRVGRGREASTCIL 598

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  P  + +  RL V++ T DGF IAEEDL+ R EG++LG +QSG+P F IA+PE+H S
Sbjct: 599 LYREPAGETATARLRVIRETTDGFRIAEEDLRLRGEGDVLGTRQSGLPGFRIARPEIHGS 658

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           L+  AR +A  IL  DP L   R +++R LLYL++ +EA   I AG
Sbjct: 659 LVAQARDEALRILQDDPKLAGERSEALRCLLYLFERDEAIPLIGAG 704


>gi|254487099|ref|ZP_05100304.1| ATP-dependent DNA helicase RecG [Roseobacter sp. GAI101]
 gi|214043968|gb|EEB84606.1| ATP-dependent DNA helicase RecG [Roseobacter sp. GAI101]
          Length = 696

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/700 (41%), Positives = 424/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +   +++            DLLF  P S IDR  +  +
Sbjct: 4   RPEPLFPLFAGLETLEGVGPKTAQHFAQL------GIQAPRDLLFTLPYSGIDRRLQASL 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            +      VT+   +  H +   +    Y+I + D      L+FF+ + +  K    EG 
Sbjct: 58  KDSVLPATVTVAVTVGPHRAPANKGG-AYRIHVEDSGTAFQLVFFHARGDYWKRQLPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+++       MVHP +          P  E VY L +G++  L  K     L+R
Sbjct: 117 RRIVSGRVELFDRMAQMVHPDFAVAEEDADQIPTFEPVYPLTSGITQKLMYKATRATLAR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P   EWI+     +  +P  A A    H+P    D    +P+RERLAYDEL+A Q+ L 
Sbjct: 177 VPPFDEWIDPSQKSQSGWPDFATAVAAAHDPENQSDLSAAAPSRERLAYDELMAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + +++ G     +G++  ++L  +P+ PT +Q  AI +I  DM+   RM R+LQGD
Sbjct: 237 LARARDRRKKGRASVGDGRLQGRVLAALPYKPTGAQTRAISEIAHDMASAQRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+ AAVEAGGQ V+MAP  ILA+QH E +K   +   +++EI+TG    
Sbjct: 297 VGAGKTLVAFMALLAAVEAGGQGVLMAPTEILARQHLEGLKPLAEQAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A RR  L  +  G   I++GTHA+FQ  + +  L L +VDEQHRFGV+QRL+L QK    
Sbjct: 357 AERRSKLAALEKGDIQILVGTHAVFQADVSFGDLRLAVVDEQHRFGVRQRLELGQKGKLA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPI+T ++  +RIDEVI RL+  + E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTALVSTDRIDEVIGRLRAAIDE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE + S+  +   RF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVEESEVSDLIAADARFKRLRAVLGEGIVGLVHGQMPPAEKDAAMRAFQRG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG+DV +ASI++IE AE FGLAQLHQLRGRVGRG+  S+C+L+Y  PL
Sbjct: 537 ETKVLVATTVIEVGVDVPNASIMVIERAESFGLAQLHQLRGRVGRGQAASTCLLMYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    RL VL+ TEDGF+IAE DLK R  G+++G  QSG+P+F +A  E    L++IA+
Sbjct: 597 TETGRQRLEVLRETEDGFVIAETDLKMRGTGDLIGTAQSGVPRFRVADLERQAGLMQIAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP+L S RG++ R+LL+L + +EA + I  G
Sbjct: 657 SDARKLLADDPELVSPRGKAARMLLWLMRQDEAIRLISVG 696


>gi|148255541|ref|YP_001240126.1| ATP-dependent DNA helicase RecG [Bradyrhizobium sp. BTAi1]
 gi|146407714|gb|ABQ36220.1| ATP-dependent DNA helicase RecG [Bradyrhizobium sp. BTAi1]
          Length = 700

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/703 (45%), Positives = 445/703 (63%), Gaps = 6/703 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLFAP++T  GVG K    L  +++C  +   R +DLL + P+S IDR  RPK
Sbjct: 1   MRPAILNPLFAPVTTLSGVGPKQDKLLRYLLSC--SETPRLVDLLLHLPASVIDRRNRPK 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           + +     +VT+   + +H       R PY +  +D TG++ L FF  K + ++ +   G
Sbjct: 59  VRDAEVGTVVTLEVTVDRHRP-SRNARAPYLVYASDETGDVVLTFFRPKGDYIEKMLPVG 117

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            K  V+G ++       +VHPH I   +       I+ VY L  GL++   ++ I  AL+
Sbjct: 118 AKRYVSGTVQMYDGVPQIVHPHPILDEAAFAKLSGIDPVYPLTEGLALGSLRRAISAALT 177

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           +LP LPEWI  ++L + +FP + EA   +H P++  D    +P   RLA+DELLAGQ+AL
Sbjct: 178 KLPDLPEWISPEVLNRCNFPPLKEALTRVHGPQELTDILPENPFWSRLAFDELLAGQLAL 237

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R Q ++  G     +G + +KI+  +P++ T SQ  A+  I  D+ +  RMLR+LQG
Sbjct: 238 ALVRAQLRRPAGNRHAGDGHLRRKIIDALPYALTNSQAGALDAIATDLEKPVRMLRLLQG 297

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+A AA  EAG QA +MAP  ILA+QH + I    +   + V I+TG   
Sbjct: 298 DVGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHAKTIAPLAERAGMNVAILTGREK 357

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR  L R+  G+  ++IGTHAL QD + +  L L IVDEQHRFGV++RL LT K  A
Sbjct: 358 GKERRDILGRLEAGEIDLLIGTHALIQDDVIFKSLALAIVDEQHRFGVRERLALTSKGEA 417

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+++ATPIPRTLVLT  GD+DIS++ EKPAGR+PI T ++   R+ EVI+ +   L 
Sbjct: 418 VDVLVLSATPIPRTLVLTYFGDMDISELREKPAGRQPIDTRVVADTRLGEVIDAVGRALQ 477

Query: 481 EGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            GK  YWICP +EE +     +  +  +R  SL E F   + ++HG+M   +K+ VM  F
Sbjct: 478 AGKLVYWICPLVEESEAEGIDHLTNATDRCESLRERFGDKVGLVHGKMKGSEKDEVMGRF 537

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTV+EVG+DV  A+I++IENAE FGLAQLHQLRGR+GRG E S+CILLYH
Sbjct: 538 AAHELRLLVATTVVEVGVDVPAATIMVIENAERFGLAQLHQLRGRIGRGSEASTCILLYH 597

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PL + S  RL+V++ T DGF IAEEDLK R EG++LGI+QSG+P + IA+PE+H  L+ 
Sbjct: 598 EPLGQMSKARLAVIRETTDGFRIAEEDLKLRGEGDVLGIRQSGLPGYRIARPEVHAQLIT 657

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            AR +A  IL +DP L   R  ++R LLYLY+ +EA   + AG
Sbjct: 658 QARDEALRILKEDPKLKGPRSDALRCLLYLYERDEAIPLLTAG 700


>gi|299133934|ref|ZP_07027128.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
 gi|298591770|gb|EFI51971.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
          Length = 702

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/704 (43%), Positives = 444/704 (63%), Gaps = 6/704 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLFAP+++  GVG K       +++   +   R +DLL + PS+ IDR  +P 
Sbjct: 1   MRPNVLNPLFAPVTSLAGVGPKQDKLFRYLLDR--SETPRIVDLLLHLPSNVIDRRAQPD 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     +VT+   I +H +    + R PY +  +D TG + L +F  +   L  +   
Sbjct: 59  IRDAVPGTVVTLKVTIDRHRAPPPGRSRAPYTVFASDDTGTVMLTYFRPQGGYLDKLLPI 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V+G ++     + MVHP  +           I+ VY L  GL++   ++ + +AL
Sbjct: 119 GEVRYVSGTVQMFDGTLQMVHPDRVVDEEGFAKLSGIDPVYPLTEGLAIGSVRRAVAQAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           ++LP LPEWI  +++++ SFP  + A + IH P +  D     P   RLA+DELLA Q+A
Sbjct: 179 TKLPQLPEWISPEVVRRCSFPDFSAALHRIHQPEEITDILPDGPFWSRLAFDELLANQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G +  KI+  +PF+ T SQ+ A + I +D+ +  RMLR+LQ
Sbjct: 239 LALVRAQLRRAAGTRHAGDGHLRAKIIDALPFALTPSQQDAARAIAEDLGKPLRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA VE G Q+ +MAP  ILA+QH   I    +   + V I+TG  
Sbjct: 299 GDVGSGKTVVALLAAAAVVEEGRQSALMAPTEILARQHIATIAPLAERAGLRVAILTGRD 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR  LER+A+G+  +++GTHAL QD + +  L L IVDEQHRFGV++RL LT K  
Sbjct: 359 KGKERRDILERLANGEIDLLVGTHALIQDEVIFKSLALAIVDEQHRFGVRERLLLTGKGE 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  +L+++ATPIPRTLV+T  GD+DIS++ EKPAGR+PI T ++P +R+ E+I+ L   L
Sbjct: 419 AVDMLVLSATPIPRTLVMTYFGDMDISELREKPAGRQPIDTRVVPNSRLGEIIDALGRAL 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVE---RFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             GK+ YWICP +EE        +V+   RF SL + F   + ++HG+M   DK++ M  
Sbjct: 479 DAGKRIYWICPLVEESDAETALPLVDATQRFESLQKKFGGVVGLVHGQMKPKDKDAAMAR 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G  +LL+ATTV+EVG+DV +A+I++IENAE FGL+QLHQLRGR+GRG E S+CILLY
Sbjct: 539 FASGETQLLVATTVVEVGVDVPEATIMVIENAERFGLSQLHQLRGRIGRGHEASTCILLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H P  + +  RL V++ T DGF IAEEDL+ R EG++LG +QSG+P F IA+PE+H  L+
Sbjct: 599 HEPAGEIATARLRVIRETTDGFRIAEEDLRLRGEGDVLGTRQSGLPGFRIARPEIHGGLV 658

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             AR +A  I+  D  L   RG+++R LLYL++ +EA   I AG
Sbjct: 659 AQARDEALRIMQDDAKLDGERGEALRCLLYLFERDEAIPLIGAG 702


>gi|89054994|ref|YP_510445.1| ATP-dependent DNA helicase RecG [Jannaschia sp. CCS1]
 gi|88864543|gb|ABD55420.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
          Length = 700

 Score =  645 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/700 (41%), Positives = 435/700 (62%), Gaps = 9/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  G+G K +   + +      +     DL+F  P+  +DR  R  I
Sbjct: 9   RPEILFPLFAGLETLDGIGPKTAKNYAGL------DVETPRDLIFTLPAGGLDRTRRASI 62

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            +++     T+   I  H   + Q R PY+I + D      L+FF+ + + L+     G 
Sbjct: 63  RDVALPGPATVEVTIGTH--IKPQGRGPYRIEVEDAKTSFHLVFFHARGDYLERAHPTGA 120

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  ++GK++       M HP ++    +  + P  E VY L  GL+     K +  AL++
Sbjct: 121 RRVISGKVELYDGIAQMAHPDHMLPPEEAASIPEYEPVYPLSQGLTQRGVHKAVQSALTK 180

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +  L EWI+ +  +++++P+ A+A   +H P+ + D    +  RERLAYDE  A Q+ L 
Sbjct: 181 IEYLGEWIDLETAKERNWPAWADAIQAVHAPQSSSDISRAALPRERLAYDEFFAHQLTLA 240

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   +++ G+    +G++  K+L  +P++PT +Q   IK+I  DM+  +RM R+LQGD
Sbjct: 241 LARATRRRKPGLSSTGDGRLRAKVLTALPYTPTGAQTRTIKEIADDMAAPHRMSRLLQGD 300

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVAL+A+  AVEAGGQAV+MAP  ILA QHY  +K    +  ++ EI+TG    
Sbjct: 301 VGAGKTLVALMALLVAVEAGGQAVMMAPTSILAGQHYLNLKPLADHAGVVCEILTGADKG 360

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R   L  +  G  HI++GTHA+FQD + +  L L +VDEQHRFGV++R++L+QK  A 
Sbjct: 361 RERDAKLNALKRGDIHILVGTHAVFQDDVAFDDLRLAVVDEQHRFGVRERVRLSQKGEAA 420

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L+MTATPIPRTL L   GD+D+S + EKP GR P+KT +I   R+DEV++ ++  L E
Sbjct: 421 DILVMTATPIPRTLSLAQYGDMDLSVLDEKPPGRTPVKTALISTARLDEVVDHMRRALDE 480

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +  +  +  ERF  L   F    +A+IHGRM   +K+++M +FK G
Sbjct: 481 GRQAYWVCPLVEESEVYDATAAEERFKMLRAAFGEGKVALIHGRMKPKEKDAIMAAFKAG 540

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+DV +ASI++IE AE++GLAQLHQLRGRVGRG   S+C+L+Y  PL
Sbjct: 541 ETRVLVATTVIEVGVDVPNASIMVIEQAENYGLAQLHQLRGRVGRGAADSTCLLMYRAPL 600

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
              +  RL V++ TEDGF I+EEDL  R  G+++G  QSG+P+F +A  E   +L+ +A+
Sbjct: 601 GDTATRRLQVMRETEDGFRISEEDLAIRGAGDLIGTAQSGLPRFRVADMESQAALMALAQ 660

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +LT DP L   RGQS R+LL+L + ++A + +  G
Sbjct: 661 TDARALLTLDPALEGARGQSARVLLWLMEQDKAIRLLNVG 700


>gi|146277207|ref|YP_001167366.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555448|gb|ABP70061.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 695

 Score =  645 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/700 (42%), Positives = 423/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +   + +        TR  DLLF  P S +DR  R  I
Sbjct: 3   RPEILFPLFADLETLDGVGPKTAKAFAGL------GVTRPKDLLFLLPHSAVDRSRRRSI 56

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            E+      T+   I  H   + +   PY+I + D   E TL+FF+ + + L  +  +G 
Sbjct: 57  REVMPPVTATVEVEIGAHYPPRRKGG-PYRIAVRDAEAEFTLVFFHARGDYLTRLLPQGE 115

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+I+       MVHP ++    +  + P  E VY L  GL+  L  K    AL R
Sbjct: 116 RRLVSGRIEFFDGMAQMVHPDHVLRPEEAADLPACEPVYPLAAGLTQKLVAKAAAAALER 175

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+  L  ++ +P  A A    H P    D   T+ AR RLAYDEL A Q+ L 
Sbjct: 176 LPELAEWIDPALKAREGWPDWATAVRASHAPAAPADVTPTAAARRRLAYDELFAHQLTLT 235

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G      G + ++ L ++PF+PT +Q  A+ +I  DM+   RM R+LQGD
Sbjct: 236 LARATRRRGKGQASVGTGALQRRALDSVPFAPTGAQTRALSEIAADMAAPLRMNRLLQGD 295

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+A AVEAGGQ V+MAP  ILA+QH   +    +   I +E++TG    
Sbjct: 296 VGAGKTLVAFLALAIAVEAGGQGVMMAPTEILARQHLSSLTPLAEAAGIRLELLTGRDKG 355

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R   L  +A G+  +++GTHA+FQ  + ++ L L IVDEQHRFGV QR++L  K  A 
Sbjct: 356 AERASKLAALASGEIGVLVGTHAVFQKDVLFHDLRLAIVDEQHRFGVAQRMELGAKGAAA 415

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GR P+KT ++   R+DEV+  L   ++E
Sbjct: 416 DVLVMTATPIPRSLALAGYGDMDVSVLDEKPPGRSPVKTALVSCERMDEVVASLAHAVAE 475

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +E+ +  ++ S   RF  L        + ++HG+M+  DK++ M  F  G
Sbjct: 476 GRQAYWVCPLVEDSEAVDYASAEARFQHLRAALGEGVVGLVHGQMAPADKDAAMARFVAG 535

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+L+Y PPL
Sbjct: 536 ETRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLMYQPPL 595

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +++   RL++L+ TEDGF IAEEDL  R  G+++G  QSG+P+F IA  E   +L+E+A+
Sbjct: 596 AESGQRRLTILRETEDGFRIAEEDLAIRGAGDLIGTAQSGLPRFRIADLERQAALMELAQ 655

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L S RGQ+ R+LL+L   + A + +  G
Sbjct: 656 SDARKLLNDDPALASPRGQAARLLLWLLDQDRAIRLLSVG 695


>gi|255263174|ref|ZP_05342516.1| ATP-dependent DNA helicase RecG [Thalassiobium sp. R2A62]
 gi|255105509|gb|EET48183.1| ATP-dependent DNA helicase RecG [Thalassiobium sp. R2A62]
          Length = 696

 Score =  645 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/700 (41%), Positives = 435/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L +  GVG K +      +N    +     DLLF  P S IDR  R  +
Sbjct: 4   RPEILFPLFAELKSLEGVGPKTA------LNYQQMHVETPRDLLFTLPHSGIDRRVRDTV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +  +++VT+   I  H     QK RPY++ ++D      L+FF+ + + ++ +  EG 
Sbjct: 58  DGVIGQQVVTVEVQIDGHQP-PRQKGRPYRVFVSDAQISFQLVFFHAREDYVRRMLPEGG 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++   N I MVHP+Y+   S+  + P  E VY L  G++     K    ALSR
Sbjct: 117 RRIVSGKVESFDNLIQMVHPNYMLPVSEAGDIPQFEPVYPLTAGVTQKGIYKAAQSALSR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P + EW++  LL ++ +P+   A   +H P+   D     PAR RLAYDEL+A Q+ L 
Sbjct: 177 VPQVDEWVDGALLAREGWPAWEAALVHVHAPQNNGDLSPEHPARLRLAYDELMAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + ++ +G      G++ ++++  +PF+PT +Q  +I +I  DM+Q  +M R+LQGD
Sbjct: 237 LARAKDRRAVGRASVGTGRLQKRVMDQLPFAPTGAQVRSIAEISDDMAQPTKMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA I +  AVEAGGQ V+MAP  ILA+QH E ++   +   +++EI+TG    
Sbjct: 297 VGAGKTLVAFIGLLVAVEAGGQGVMMAPTEILARQHLEGLQPLAEQAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R   L  +A G   I++GTHA+FQ  +++  L L I+DEQHRFGV+QRL+L  K    
Sbjct: 357 RERAAKLAALAAGDIQILVGTHAVFQKDVEFGDLRLAIIDEQHRFGVRQRLELGAKGPVT 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GR P++T ++  +R+D+VI RL+  ++E
Sbjct: 417 DVLVMTATPIPRSLELAQYGDMDVSVLDEKPPGRTPVQTALVATSRMDQVIARLQAAVAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +  +  +  ERF  L        + ++HG+M   DK++ M  F  G
Sbjct: 477 GRQAYWVCPLVEESEVVDMTAAEERFKRLRAVMGEGVVGLVHGQMPPADKDAAMAKFVAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+LLY  P+
Sbjct: 537 ETSVLVATTVIEVGVNVPNASIMVIERAESFGLAQLHQLRGRVGRGSAASTCLLLYQAPM 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL +++ TEDGF I+EEDL  R  G+++G  QSG+P+F +A  E    L+ +A+
Sbjct: 597 SETGKRRLEIMRETEDGFRISEEDLAIRGAGDVIGTAQSGLPQFRVADLERQLGLMAMAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP LTS RGQ+ R+LL+L + +++ + I  G
Sbjct: 657 SDARKLLHDDPTLTSPRGQAARVLLWLMEQDKSIRLISVG 696


>gi|188583859|ref|YP_001927304.1| ATP-dependent DNA helicase RecG [Methylobacterium populi BJ001]
 gi|179347357|gb|ACB82769.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 729

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/706 (44%), Positives = 447/706 (63%), Gaps = 10/706 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           +RPS L+PLFAP     GVG K +  + K++        R  DLLF+ P S + R     
Sbjct: 28  LRPSILDPLFAPARGLPGVGPKIAPLIEKLLGSEER-PARVADLLFHLPQSGVARPLCGS 86

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I +      VT+   +  H    L KR  +++L+ DGTG+I+L+FF      ++ +   G
Sbjct: 87  IRDAPTGEPVTLGVTVVAHRPPMLGKR-AFRVLVEDGTGDISLVFFGMPRGRIEKMLPIG 145

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+G+I        MVHP  I   +   + P +E +Y    GL+  +  KI+  AL 
Sbjct: 146 AHRYVSGRIDLWDGTRQMVHPSRILDEAGLASLPAVEPIYGATEGLTSRVISKIVHGALD 205

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE------WTSPARERLAYDELL 234
           RLPVLPEW +   L +  FP  AEA  I H P +A            SPAR+RLAYDELL
Sbjct: 206 RLPVLPEWQDPAYLARNRFPPFAEALRIEHRPEEAPPPPVEGQAPPASPARKRLAYDELL 265

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A Q+AL L+R + +++ G     +G + +++   +PF+ T +Q  A+++I  DM+ + RM
Sbjct: 266 ASQLALALVRARQRRKAGRVNAGDGHLKEQVAAALPFALTGAQARAVEEIRADMAAERRM 325

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           LR+LQGDVGSGKT VAL+AMA+AVEAG QA +MAP  ILA+QHYE +       ++   +
Sbjct: 326 LRLLQGDVGSGKTAVALLAMASAVEAGRQAALMAPTEILARQHYERLVPLAGAMRLR--L 383

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG    A RR  L  +A G+  I++GTHALFQ+++ +  L L +VDEQHRFGV QRL L
Sbjct: 384 LTGRDRAAERRATLADLAAGEIDIVVGTHALFQEAVAFRDLGLAVVDEQHRFGVHQRLAL 443

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K  A  +L+MTATPIPRTL LT  GD+D+S + EKPAGR+PIKT+ +P+ RIDEV+  
Sbjct: 444 GAKGEAVDILVMTATPIPRTLALTFFGDMDVSVLDEKPAGRQPIKTITVPVERIDEVVAG 503

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L   L  G + YWICP + E +  +  +  ERF  L +HF  ++ +IHG+M   +K++ M
Sbjct: 504 LHRALQAGDRVYWICPLVAESEYVDLAAAAERFEDLQKHFGDAVGLIHGKMPGPEKDAAM 563

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           ++F  G  ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC+L
Sbjct: 564 EAFAAGRTRVLVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSCLL 623

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL + +  RL +++ +EDGF IAEEDL+ R EGE+LG +QSGM  F +A+ E    
Sbjct: 624 LYRGPLGQVAKARLEMMRGSEDGFRIAEEDLRLRGEGEVLGTRQSGMAAFRLARLESDGD 683

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           LLE AR DA+ I+ +DP L+S RG+++R+LLYL++   A + I AG
Sbjct: 684 LLEAARDDARLIIERDPRLSSERGRALRVLLYLFEREAAIRLIGAG 729


>gi|254563488|ref|YP_003070583.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Methylobacterium extorquens DM4]
 gi|254270766|emb|CAX26771.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Methylobacterium extorquens DM4]
          Length = 729

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/706 (44%), Positives = 446/706 (63%), Gaps = 10/706 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           +RPS L+PLFAP     GVG K +  + K++        R  DLLF+ P S + R     
Sbjct: 28  LRPSLLDPLFAPARGLPGVGPKIAPLIEKLLGSEER-PARVADLLFHLPQSGVARPLCGS 86

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I +      VT+   +  H    L KR  +++L+ DGTG+I+L+FF      ++ +   G
Sbjct: 87  IRDAPTGEPVTLGVTVVAHRPPMLGKR-AFRVLVEDGTGDISLVFFGMPRGRIEKMLPLG 145

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+G+I        MVHP  I       + P +E +Y    GL+  +  +I+  AL 
Sbjct: 146 SHRYVSGRIDLWDGTRQMVHPSRILDQEGLASLPAVEPIYGATEGLTSRVISRIVHGALD 205

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE------WTSPARERLAYDELL 234
           RLPVLPEW +   L +  FP  AEA  I H P +A            SPAR+RLAYDELL
Sbjct: 206 RLPVLPEWQDASYLARNRFPPFAEALRIEHRPEEAPPPPVEGQAPPASPARKRLAYDELL 265

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A Q+AL L+R + +++ G     +G + +++   +PF+ T +Q  A+++I  DM+ + RM
Sbjct: 266 ASQLALALVRARQRRKPGRVNAGDGHLKERVEAALPFALTGAQARAVEEIRADMAAERRM 325

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           LR+LQGDVGSGKT VAL+AMA+AVEAG QA +MAP  ILA+QHYE +       ++   +
Sbjct: 326 LRLLQGDVGSGKTAVALLAMASAVEAGRQAALMAPTEILARQHYERLVPLAGAMRLR--L 383

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG    A RR  L  +A G+  I++GTHALFQ+S+ +  L L +VDEQHRFGV QRL L
Sbjct: 384 LTGRDRAAERRATLADLAAGEIDIVVGTHALFQESVAFRDLGLAVVDEQHRFGVHQRLAL 443

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K  A  +L+MTATPIPRTL LT  GD+D+S + EKPAGR+PIKT+ +P+ RIDEV+  
Sbjct: 444 GAKGEAVDILVMTATPIPRTLALTFFGDMDVSVLDEKPAGRQPIKTITVPVERIDEVVGG 503

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L   L+ G + YWICP + E +  +  +  ERF  L +HF  ++ +IHG+M   +K++ M
Sbjct: 504 LHRALAAGDRVYWICPLVAESEYVDLAAAAERFEDLQKHFGDAVGLIHGKMPGPEKDAAM 563

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           ++F  G  ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC+L
Sbjct: 564 EAFAAGRTRVLVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSCLL 623

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL + +  RL +++++EDGF IAEEDL+ R EGE+LG +QSG   F +A+ E    
Sbjct: 624 LYRGPLGQVAKARLEMMRSSEDGFRIAEEDLRLRGEGEVLGTRQSGAAAFRLARLETDGD 683

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           LLE AR DA+ I+ +DP L S RG+++R+LLYL++   A + I AG
Sbjct: 684 LLEAARDDARLIVERDPRLASERGRALRVLLYLFEREAAIRLIGAG 729


>gi|115524794|ref|YP_781705.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115518741|gb|ABJ06725.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 699

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/701 (44%), Positives = 442/701 (63%), Gaps = 3/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA +++  GVG K       +++   A+  R +DLL + P++ IDR  RPK
Sbjct: 1   MRPELLNPLFALVTSLSGVGPKQDKLFRYLLDR--ADTPRLVDLLLHLPTTVIDRRARPK 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     +VT+   + +H      + R P+ +  +D +G++ L +F  +   ++ +   
Sbjct: 59  IRDAVPGTVVTLEVTVDRHRPAPPGRSRAPHLVYASDDSGDVVLTYFRAQPGYVEKLLPV 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V+G  +     + +VHP  +   +       I+ VY L  GL++   ++ I +AL
Sbjct: 119 GAKRYVSGTAQMFDGTLQIVHPDRVVDEAGLAQLTGIDPVYPLTEGLALGSLRRAIAQAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           ++LP LPEWI  D+L++  FP +AEA   +H P +  D     P   RLAYDELLAGQ+A
Sbjct: 179 TKLPALPEWISPDVLRRCGFPPLAEALQRVHRPIELTDVLPAGPFWSRLAYDELLAGQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G++  +I+  +P++ T SQ+ A   I +D+ Q  RMLR+LQ
Sbjct: 239 LALVRAQLRRPAGTRNAGDGQLRSRIIDALPYALTPSQQDAAAAIAEDLRQPVRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  E G QA +MAP  ILA+QH + I        +  EI+TG  
Sbjct: 299 GDVGSGKTVVALLAAAAVAEVGKQAALMAPTEILARQHAKTITPLAARAGLNAEILTGRE 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR  L R+A G+ HIIIGTHAL QD + +  L L +VDEQHRFGV++RL LT K  
Sbjct: 359 KGKERRDILARLASGEIHIIIGTHALIQDDVAFNDLALAVVDEQHRFGVRERLALTSKGD 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  VL+++ATPIPRTLVLT  GD+D+S++ EKPAGR+PI T  +P+ R+ EV++ +   L
Sbjct: 419 AVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRAVPMVRLAEVMDAVGRAL 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + GK  YWICP +EE +  +      RF SL E +   + ++HGRM  +DK+SVM  F  
Sbjct: 479 AGGKLVYWICPLVEESEAVDLTDAERRFESLKERYGDRVGLVHGRMRGVDKDSVMAQFAA 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+ATTV+EVG+DV DA+I++IENAE FGLAQLHQLRGR+GRG E S+C+LLY  P
Sbjct: 539 HEIGVLVATTVVEVGVDVPDATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYKDP 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + S  RL V++ T DGF IAEEDLK R EG+ILG +QSG+P + IA+ E H  L+  A
Sbjct: 599 LGEMSAARLRVIRETTDGFRIAEEDLKLRGEGDILGTRQSGLPGYRIARSEFHAQLIAQA 658

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R +A  IL +DP L   RG+++R LLYLY+ +EA   I AG
Sbjct: 659 RDEALRILKEDPKLKGPRGEALRCLLYLYERDEALPLIGAG 699


>gi|75675707|ref|YP_318128.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
 gi|74420577|gb|ABA04776.1| ATP-dependent DNA helicase RecG [Nitrobacter winogradskyi Nb-255]
          Length = 699

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/701 (41%), Positives = 435/701 (62%), Gaps = 3/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLF P+++  GVG K       ++        R +DLLF+ P+S +DR  RPK
Sbjct: 1   MRPALLNPLFVPVTSLSGVGPKQDRLFRHLLARDE--TPRLVDLLFHLPASVVDRRARPK 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     IVT+   + +H      + R P+ +  +D TG + L +F  +   ++ +   
Sbjct: 59  IRDAVPGTIVTLEVSVDRHRPAPPGRSRAPHLVYASDETGSVVLTYFRAQPSYVEKLLPA 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V+G ++     + +VHP  +   +       I+ VY L  GL+    ++ I +AL
Sbjct: 119 GSKRYVSGTVQMFDGTLQIVHPDRVVDEAGLAELSGIDPVYPLTQGLAPGALRRAIAQAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             LPVLPEW +  +L++  FP +A+A   +H P +  D     P   RLA+DELLAGQ+A
Sbjct: 179 QNLPVLPEWTDPKILRRCGFPPLAQALRRVHVPLELTDTLPEGPFWSRLAFDELLAGQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R + ++  G     +G +  +I+  +P++ T SQ+ A+  I++D+ Q  RMLR+LQ
Sbjct: 239 LTLVRARLRRPAGNRHAGDGHLRNRIIDALPYALTASQQQAVAAIIEDLRQPVRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A  A  E+G Q  +MAP  +LA+QH + I    +   + V I+TG  
Sbjct: 299 GDVGSGKTVVALLAACAVAESGKQTALMAPTEVLARQHIKTIAPLAERAGLRVAILTGRE 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+   R+A G   +++GTHAL QD + +  L L +VDEQHRFGV++RL LT K  
Sbjct: 359 KGRERREITARLAEGDIDLLVGTHALIQDEVTFKSLALAVVDEQHRFGVRERLALTTKGE 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  VL+++ATPIPRTLVLT  GD+D+S++ +KPAGR+PI T  +   R+ EVI+ +   +
Sbjct: 419 AVDVLVLSATPIPRTLVLTYFGDMDVSELRDKPAGRQPIDTRAVSDGRLTEVIDAVGRAV 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             GK AYWICP +EE    +     +R+ SL   F   + ++HG+M   +K+ VM  F  
Sbjct: 479 KAGKLAYWICPLVEESDAVDLSDAEQRYQSLKARFGDRVGLVHGKMRGPEKDRVMAQFAA 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   LL+ATTV+EVG+DV  A+I++IENAE FGLAQLHQLRGR+GRG E S+C+LLY  P
Sbjct: 539 GEINLLVATTVVEVGVDVPAATIMVIENAERFGLAQLHQLRGRIGRGSEPSTCLLLYREP 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + S  RL V++ T DGF IAEEDL+ R EG++LG +QSG+P + +A+ ++H  L+ +A
Sbjct: 599 LGEMSAARLRVIRETTDGFRIAEEDLRLRGEGDVLGTRQSGLPGYRVARSDVHAQLITLA 658

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R +A  IL Q+P+LT   G+++R LLYL++ +EA   + AG
Sbjct: 659 RDEALRILKQNPNLTGSHGEALRCLLYLFERDEALPLLGAG 699


>gi|163853558|ref|YP_001641601.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163665163|gb|ABY32530.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
          Length = 729

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/706 (44%), Positives = 445/706 (63%), Gaps = 10/706 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           +RPS L+PLFAP     GVG K +  + K++        R  DLLF+ P S + R     
Sbjct: 28  LRPSLLDPLFAPARGLPGVGPKIAPLIEKLLGSEER-PARVADLLFHLPQSGVARPLCGS 86

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I +      VT+   +  H    L KR  +++L+ DGTG+I+L+FF      ++ +   G
Sbjct: 87  IRDAPTGEPVTLGVTVVAHRPPMLGKR-AFRVLVEDGTGDISLVFFGMPRGRIEKMLPLG 145

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+G+I        MVHP  I       + P +E +Y    GL+  +  +I+  AL 
Sbjct: 146 SHRYVSGRIDLWDGTRQMVHPSRILDQEGLASLPAVEPIYGATEGLTSRVISRIVHGALD 205

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE------WTSPARERLAYDELL 234
           RLPVLPEW +   L +  FP  AEA  I H P +A            SPAR+RLAYDELL
Sbjct: 206 RLPVLPEWQDASYLARNRFPPFAEALRIEHRPEEAPPPPVEGQAPPASPARKRLAYDELL 265

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A Q+AL L+R + +++ G     +G + +++   +PF+ T +Q  A+++I  DM+ + RM
Sbjct: 266 ASQLALALVRARQRRKPGRVNAGDGHLKERVEAALPFALTGAQARAVEEIRADMAAERRM 325

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           LR+LQGDVGSGKT VAL+AMA+AVEAG QA +MAP  ILA+QHYE +       ++   +
Sbjct: 326 LRLLQGDVGSGKTAVALLAMASAVEAGRQAALMAPTEILARQHYERLVPLAGAMRLR--L 383

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG    A RR  L  +A G+  I++GTHALFQ+S+ +  L L +VDEQHRFGV QRL L
Sbjct: 384 LTGRDRAAERRATLADLAAGEIDIVVGTHALFQESVAFRDLGLAVVDEQHRFGVHQRLAL 443

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K  A  +L+MTATPIPRTL LT  GD+D+S + EKPAGR+PIKT+ +P+ RIDEV+  
Sbjct: 444 GAKGEAVDILVMTATPIPRTLALTFFGDMDVSVLDEKPAGRQPIKTITVPVERIDEVVGG 503

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L   L+ G + YWICP + E +  +  +  ERF  L +HF  ++ +IHG+M   +K++ M
Sbjct: 504 LHRALAAGDRVYWICPLVAESEYVDLAAAAERFEDLQKHFGDAVGLIHGKMPGPEKDAAM 563

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           ++F  G  ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC+L
Sbjct: 564 EAFAAGRTRVLVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSCLL 623

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL + +  RL +++ +EDGF IAEEDL+ R EGE+LG +QSG   F +A+ E    
Sbjct: 624 LYRGPLGQVAKARLEMMRGSEDGFRIAEEDLRLRGEGEVLGTRQSGAAAFRLARLETDGD 683

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           LLE AR DA+ I+ +DP L S RG+++R+LLYL++   A + I AG
Sbjct: 684 LLEAARDDARLIVERDPRLQSERGRALRVLLYLFEREAAIRLIGAG 729


>gi|85717291|ref|ZP_01048245.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
 gi|85695880|gb|EAQ33784.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
          Length = 699

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/701 (42%), Positives = 437/701 (62%), Gaps = 3/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFAP+++  GVG +       ++  G  +  R IDLLF+ P+S IDR  RP+
Sbjct: 1   MRPPLLNPLFAPVTSLSGVGPRQDKLFRYLL--GRQDTPRLIDLLFHLPASVIDRRARPR 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     +VT+   + +H      + R P+ +  +D TG++ L +F  +   ++ +   
Sbjct: 59  IRDAVPGTVVTLEVTVDRHRPAPPGRSRAPHLVYASDETGDVVLTYFRAQPGYVEKLLPV 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V+G ++     + +VHP  +   S       I+ VY L  GL++   ++ I +AL
Sbjct: 119 GSKRYVSGTVQMFDGALQIVHPDRVVDESGLAALSAIDPVYPLTEGLALGSLRRAIAQAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            ++PVLPEWI+  +L++  FPS+ +A   +H P +  D     P   RLA+DELLAGQ+A
Sbjct: 179 QKMPVLPEWIDPKILRRCGFPSLEQAIRRVHAPLELADILPEGPFWSRLAFDELLAGQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G +   I+  +P++ T SQ  A+  I +D+ Q  RMLR+LQ
Sbjct: 239 LALVRAQLRRPAGNRHAGDGHLRNTIIDALPYALTASQRQAVAAISEDLRQPVRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A  A  EAG Q  +MAP  +L +QH + I        + V I+TG  
Sbjct: 299 GDVGSGKTVVALLAAGAVAEAGKQTALMAPTEVLVRQHIKTIAPLADRAGLRVAILTGRE 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+   R+A G   +I+GTHAL QD + +  L L +VDEQHRFGV+QRL LT K  
Sbjct: 359 KGKERREITARLARGDIDLIVGTHALIQDDVTFRSLALAVVDEQHRFGVRQRLALTAKGE 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  VL+++ATPIPRTLVLT  GD+D+S++ EKPAGR PI T  +   R++EV++ +   +
Sbjct: 419 AVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRLPIDTRAVSDRRLNEVVDAVGRAV 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G+ AYWICP +EE    +     +RF SL   F   + ++HG+M   +K+ VM  F +
Sbjct: 479 KAGRLAYWICPLVEESDAVDLSDAEQRFQSLKARFGDRVGLVHGKMRGPEKDRVMAQFAS 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   LL+ATTV+EVG+DV  A++++IENAE FGLAQLHQLRGR+GRG E S+C+LLY  P
Sbjct: 539 GEINLLVATTVVEVGVDVPAATVMVIENAERFGLAQLHQLRGRIGRGSEPSTCLLLYREP 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + S  RL V++ T DGF IAEEDLK R EG++LG +QSG+P + IA+ ++H  L+ +A
Sbjct: 599 LGEMSAARLRVIRETTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSDVHAQLITLA 658

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R +A  IL Q+P+LT   G+++R LLYL++ +EA   + AG
Sbjct: 659 RDEALRILKQNPNLTGAHGEALRCLLYLFERDEALPLLGAG 699


>gi|218532418|ref|YP_002423234.1| ATP-dependent DNA helicase RecG [Methylobacterium chloromethanicum
           CM4]
 gi|218524721|gb|ACK85306.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 729

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/706 (44%), Positives = 445/706 (63%), Gaps = 10/706 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           +RPS L+PLFAP     GVG K +  + K++        R  DLLF+ P S + R     
Sbjct: 28  LRPSLLDPLFAPARGLPGVGPKIAPLIEKLLGSEER-PARVADLLFHLPQSGVARPLCGS 86

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I +      +T+   +  H    L KR  +++L+ DGTG+I+L+FF      ++ +   G
Sbjct: 87  IRDAPTGEPITLGVTVVAHRPPMLGKR-AFRVLVEDGTGDISLVFFGMPRGRIEKMLPLG 145

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+G+I        MVHP  I       + P +E +Y    GL+  +  +I+  AL 
Sbjct: 146 SHRYVSGRIDLWDGTRQMVHPSRILDQEGLASLPAVEPIYGATEGLTSRVISRIVHGALD 205

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE------WTSPARERLAYDELL 234
           RLPVLPEW +   L +  FP  AEA  I H P +A           TSPAR+RLAYDELL
Sbjct: 206 RLPVLPEWQDASYLARNRFPPFAEALRIEHRPEEAPPPPVEGQAPPTSPARKRLAYDELL 265

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A Q+AL L+R + +++ G     +G + +++   +PF+ T +Q  A+ +I  DM+ + RM
Sbjct: 266 ASQLALALVRARQRRKPGRVNAGDGHLKERVEAALPFALTGAQARAVDEIRADMAAERRM 325

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           LR+LQGDVGSGKT VAL+AMA+AVEAG QA +MAP  ILA+QHYE +       ++   +
Sbjct: 326 LRLLQGDVGSGKTAVALLAMASAVEAGRQAALMAPTEILARQHYERLVPLAGAMRLR--L 383

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG    A RR  L  +A G+  I++GTHALFQ+S+ +  L L +VDEQHRFGV QRL L
Sbjct: 384 LTGRDRAAERRATLADLAAGEIDIVVGTHALFQESVAFRDLGLAVVDEQHRFGVHQRLAL 443

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K  A  +L+MTATPIPRTL LT  GD+D+S + EKPAGR+PIKT+ +P+ RIDEV+  
Sbjct: 444 GAKGEAVDILVMTATPIPRTLALTFFGDMDVSVLDEKPAGRQPIKTITVPVERIDEVVGG 503

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L   L+ G + YWICP + E +  +  +  ERF  L +HF  ++ +IHG+M   +K++ M
Sbjct: 504 LHRALAAGDRVYWICPLVAESEYVDLAAAAERFEDLQKHFGDAVGLIHGKMPGPEKDAAM 563

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           ++F  G  ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC+L
Sbjct: 564 EAFAAGRTRVLVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSCLL 623

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL + +  RL +++ +EDGF IAEEDL+ R EGE+LG +QSG   F +A+ E    
Sbjct: 624 LYRGPLGQVAKARLEMMRGSEDGFRIAEEDLRLRGEGEVLGTRQSGAAAFRLARLETDGD 683

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           LLE AR DA+ I+ +DP L S RG+++R+LLYL++   A + I AG
Sbjct: 684 LLEAARDDARLIVERDPRLASERGRALRVLLYLFEREAAIRLIGAG 729


>gi|259416724|ref|ZP_05740644.1| ATP-dependent DNA helicase RecG [Silicibacter sp. TrichCH4B]
 gi|259348163|gb|EEW59940.1| ATP-dependent DNA helicase RecG [Silicibacter sp. TrichCH4B]
          Length = 696

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/700 (42%), Positives = 427/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T +GVG K +   +++        T   DLLF  P S +DR  R  I
Sbjct: 4   RPEQLFPLFAELETLQGVGPKIAEHFAQLQ------ITAPRDLLFSLPYSLVDRRRRETI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +      T+   + +H   + +    Y+I + D   E  L+FF+ ++  L     EG 
Sbjct: 58  RGLELPTTATVEITVGRHRPARNKGG-AYRIDVTDQETEFQLVFFHGRSRYLTAQLPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++    +  + P  E VY L  G++     K +  AL R
Sbjct: 117 RRVVSGKLELFDGMAQMVHPDHMLPLEEAGDIPDFEPVYHLTHGITQKTMFKAVQSALQR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P L EW++     K+ +    EA    H P    D E  +PAR RLAYDEL A Q+ L 
Sbjct: 177 VPELTEWMDASYKTKRGWADWHEAIATAHAPGHLSDLEPEAPARARLAYDELFAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           + R   +++ G      GK+  K+L  +P+ PT +Q  AI++I  DM+   RM R+LQGD
Sbjct: 237 IARSVEREQPGRSSVATGKLQNKVLSALPYKPTGAQGRAIEEITADMASGRRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E +K    +  +++EI+TG    
Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTEILARQHLEGLKPLADDAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR   E +  G  HI++GTHA+FQ  + +  L LVIVDEQHRFGV+QR++L +K    
Sbjct: 357 KDRRAKTEALQRGDIHILVGTHAVFQQDVVFDDLRLVIVDEQHRFGVRQRMELAEKGKRS 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L LT  GD+++S + EKP GRKPIKT I+   R+ EV++ L+  ++E
Sbjct: 417 DVLVMTATPIPRSLALTQYGDMEVSILDEKPPGRKPIKTAILSTERMSEVVDHLRRAIAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE +  +  +  ERF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVEESEVMDLTAADERFKHLRAVLGDDVVGLVHGQMPPAEKDAAMAAFQEG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+L+Y PPL
Sbjct: 537 RTRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGTAQSTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    RL VL+ +EDGF+IAE DL+ R  G+++G  QSG+P+F IA  E    L+ IA+
Sbjct: 597 TEGGRRRLEVLRESEDGFVIAETDLQMRGAGDVIGTAQSGLPRFRIADLERQADLMAIAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ ++T DPDLTS RG++ R LL+L + +EA + I  G
Sbjct: 657 SDARALMTSDPDLTSDRGRAARTLLWLLRQDEAIRLISVG 696


>gi|240140977|ref|YP_002965457.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Methylobacterium extorquens AM1]
 gi|240010954|gb|ACS42180.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Methylobacterium extorquens AM1]
          Length = 729

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/706 (44%), Positives = 446/706 (63%), Gaps = 10/706 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           +RPS L+PLFAP     GVG K +  + K++        R  DLLF+ P S + R     
Sbjct: 28  LRPSLLDPLFAPARGLPGVGPKIAPLIEKLLGSEER-PARVADLLFHLPQSGVARPLCGS 86

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I +      VT+   +  H    L KR  +++L+ DGTG+I+L+FF      ++ +   G
Sbjct: 87  IRDAPTGEPVTLGVTVVAHRPPMLGKR-AFRVLVEDGTGDISLVFFGMPRGRIEKMLPLG 145

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+G+I        MVHP  I       + P +E +Y    GL+  +  +I+  AL 
Sbjct: 146 SHRYVSGRIDLWDGTRQMVHPSRILDQEGLASLPAVEPIYGATEGLTSRVISRIVHGALD 205

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE------WTSPARERLAYDELL 234
           RLPVLPEW +   L +  FP  AEA  I H P +A            SPAR+RLAYDELL
Sbjct: 206 RLPVLPEWQDASYLARNRFPPFAEALRIEHRPEEAPPPPVEGQALPASPARKRLAYDELL 265

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A Q+AL L+R + +++ G     +G + +++   +PF+ T +Q  A+++I  DM+ + RM
Sbjct: 266 ASQLALALVRARQRRKPGRVNAGDGHLKERVEAAMPFALTGAQARAVEEIRADMAAERRM 325

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           LR+LQGDVGSGKT VAL+AMA+AVEAG QA +MAP  ILA+QHYE +       ++   +
Sbjct: 326 LRLLQGDVGSGKTAVALLAMASAVEAGRQAALMAPTEILARQHYERLVPLAGAMRLR--L 383

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG    A RR  L  +A G+  I++GTHALFQ+S+ +  L L +VDEQHRFGV QRL L
Sbjct: 384 LTGRDRAAERRATLADLAAGEIDIVVGTHALFQESVAFRDLGLAVVDEQHRFGVHQRLAL 443

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K  A  +L+MTATPIPRTL LT  GD+D+S + EKPAGR+PIKT+ +P+ RIDEV+  
Sbjct: 444 GAKGEAVDILVMTATPIPRTLALTFFGDMDVSVLDEKPAGRQPIKTITVPVERIDEVVGG 503

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L   L+ G + YWICP + E +  +  +  ERF  L +HF  ++ +IHG+M   +K++ M
Sbjct: 504 LHRALAAGDRVYWICPLVAESEYVDLAAAAERFEDLQKHFGDAVGLIHGKMPGPEKDAAM 563

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           ++F  G  ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC+L
Sbjct: 564 EAFAAGRTRVLVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSCLL 623

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL + +  RL +++++EDGF IAEEDL+ R EGE+LG +QSG   F +A+ E    
Sbjct: 624 LYRGPLGQVAKARLEMMRSSEDGFRIAEEDLRLRGEGEVLGTRQSGAAAFRLARLETDGD 683

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           LLE AR DA+ I+ +DP L S RG+++R+LLYL++   A + I AG
Sbjct: 684 LLEAARDDARLIVERDPRLQSERGRALRVLLYLFEREAAIRLIGAG 729


>gi|126462049|ref|YP_001043163.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103713|gb|ABN76391.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides ATCC
           17029]
          Length = 695

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/700 (42%), Positives = 422/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +   + +        TR  DLLF  P S +DR  R  I
Sbjct: 3   RPEILFPLFADLETLEGVGPKSAKAFAGL------GVTRPKDLLFLLPHSAVDRSRRASI 56

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            ++      T+   +  H     +K  PY+I + D   E TL+FF+ + + L  +   G 
Sbjct: 57  RDVLPPVTATVEVTVGAHYP-SRRKGGPYRIAVRDAEAEFTLVFFHARGDYLMKLLPPGE 115

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+I+       MVHP ++    +    P  E VY L  GL+  L  K    AL R
Sbjct: 116 QRIVSGRIEVFDGMAQMVHPDHVLPPEEAAALPACEPVYPLTAGLTQKLVAKAASAALLR 175

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+  L  ++ +P  A A    H P    +   T+ AR RLAYDEL A Q+ L 
Sbjct: 176 LPELAEWIDPGLKAREGWPDWAAAVRAAHAPEAPAEVTPTAAARRRLAYDELFAHQLTLT 235

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G+     G + +++L ++PF+PT +Q  A+ +I  DM+   RM R+LQGD
Sbjct: 236 LARASRRRGRGVASVGTGALQRRVLESLPFAPTAAQTRAVAEIAADMAAPQRMNRLLQGD 295

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+A AVEAGGQ V+MAP  ILA+QH   +    +   I + ++TG    
Sbjct: 296 VGAGKTLVAFLALAIAVEAGGQGVMMAPTEILARQHLASLAPMAEAAGIRLALLTGRDKG 355

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R   L  +A G+  +++GTHA+FQ  + ++ L L IVDEQHRFGV QR++L  K  A 
Sbjct: 356 AERAAKLAALASGEIGVLVGTHAVFQKDVIFHDLRLAIVDEQHRFGVAQRMELGAKGAAA 415

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L S GD+D+S + EKP GR P+KT ++   RIDEV+  L   ++E
Sbjct: 416 DVLVMTATPIPRSLALASYGDMDVSVLDEKPPGRTPVKTALVSCERIDEVVASLAHAVAE 475

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +E+ +  ++ S   RF  L       ++ ++HG+M   +K++ M  F  G
Sbjct: 476 GRQAYWVCPLVEDSEAVDYASAEARFQHLRAALGEGTVGLVHGQMPPAEKDAAMARFVAG 535

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+LLY  PL
Sbjct: 536 ETRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLLYQAPL 595

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +++   RL++L+ TEDGF IAEEDL  R  G+++G  QSG+P+F IA  E   +L+E+A+
Sbjct: 596 AESGQRRLTILRETEDGFRIAEEDLAIRGAGDLIGTAQSGLPRFRIADLERQSALMEVAQ 655

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L S RG++ R+LL+L   + A + +  G
Sbjct: 656 SDARKLLHDDPTLASPRGEAARLLLWLLDQDRAIRLLSVG 695


>gi|126736447|ref|ZP_01752188.1| ATP-dependent DNA helicase RecG [Roseobacter sp. CCS2]
 gi|126713985|gb|EBA10855.1| ATP-dependent DNA helicase RecG [Roseobacter sp. CCS2]
          Length = 696

 Score =  640 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/700 (40%), Positives = 428/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLF  ++   G+G K +  L            + +D+L   P S +DRH R  I
Sbjct: 4   RPETLFPLFGAVTKLDGIGPKSAQTL------DGVGVVKPLDILMTLPLSGVDRHRRASI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            E+    + T+   +  H     +   PY++ + D      L+FF+ + + L+ +   G+
Sbjct: 58  REVVAPSVATVEVTVGDHYPPSTRG-HPYRVHVEDAETSFQLVFFHARGDYLQKLLPTGQ 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       +VHP ++   ++  + P  E VY L  G++     K    AL  
Sbjct: 117 RRVVSGKVEIFDGIAQIVHPDHVLPVAEAEDIPAFEPVYPLHAGITQKAMWKATRSALGL 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P LPEWI+  L  ++ +P  A+A +  H P+   D    SPAR RLAYDELLA Q+ L 
Sbjct: 177 MPKLPEWIDPALKAREDWPDWADAMHKAHGPQATSDLSPHSPARARLAYDELLAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   +K  GI     G ++ ++L ++P+ PT +Q+ A  +I  D++   RM R+LQGD
Sbjct: 237 LARAATRKAKGIASQATGDLSGRVLASLPYKPTGAQQRAFAEIAADLATPLRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVAL+A+   VEAGGQ V+MAP  ILA+QH + ++   ++  +++EI+TG    
Sbjct: 297 VGSGKTLVALMALLDVVEAGGQGVMMAPTEILARQHLDGLRPLAESAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           + R   L+ +A G+ +I++GTHA+FQ  I +  L L I+DEQHRFGV QR++L  K  A 
Sbjct: 357 SGRAAKLKALADGEINILVGTHAVFQKDIVFKDLRLAIIDEQHRFGVSQRMELGAKGQAV 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GR P++T ++   R+DEVIE+L+  ++E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRTPVQTALVSAARMDEVIEKLRHAVAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +  +  +  ERF  L        + ++HG+M   +K++ M  F  G
Sbjct: 477 GRQAYWVCPLVEESEIVDMTAAEERFKRLRATLGEGVVGLVHGQMPPAEKDAAMARFVAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +ASI++IE+A+ FGLAQLHQLRGRVGRG   SSC+L+Y PPL
Sbjct: 537 ETKVLVATTVIEVGVNVPNASIMMIEHADRFGLAQLHQLRGRVGRGSAASSCLLIYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            ++   RL +L+ TEDGF I+EEDL  R  G+++G  QSG+P+F IA  E     + +A+
Sbjct: 597 GESGRRRLEILRETEDGFRISEEDLAMRGAGDVIGTAQSGIPRFRIADLERQAGQMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L + RG++ R LL+L + ++A + I  G
Sbjct: 657 SDARALLNADPKLETARGKAARTLLWLMEQDKAIRLISVG 696


>gi|163747148|ref|ZP_02154504.1| ATP-dependent DNA helicase RecG [Oceanibulbus indolifex HEL-45]
 gi|161379709|gb|EDQ04122.1| ATP-dependent DNA helicase RecG [Oceanibulbus indolifex HEL-45]
          Length = 696

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/700 (42%), Positives = 441/700 (63%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +  L+++            DL+F  P S IDR  R  +
Sbjct: 4   RPEQLFPLFAGLETLEGVGPKTAQLLNQLA------IQAPRDLIFTLPHSGIDRRLRDSV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            +      +T+   I  H   + +    Y+I + D      L++F+ + +  +    EG 
Sbjct: 58  QDAHLPATITVAVTIGAHRPARTKGG-AYRITVEDAQTSFQLVYFHARGDYWQRQLPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+++       MVHP +     Q  + P  E VY L  GL+  +  K    AL+R
Sbjct: 117 RRIVSGRVEFFDGIAQMVHPDFAVPEEQAGDIPDFEPVYPLTAGLTQKVMYKATRGALAR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LPV+ EW +   + + ++P  A A    H+P+ A+D   T+PARERLAYDELLA Q+ L 
Sbjct: 177 LPVVAEWADPGQVAQANWPDFAAAAEAAHDPQTAQDLTATAPARERLAYDELLAHQVTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R+  +++ G   + +G++ Q++L+++P+SPT +Q  AI +I  DM Q+ RM R+LQGD
Sbjct: 237 LARQSERRKKGRASHGDGRLEQRVLKSLPYSPTGAQRRAIDEITADMGQETRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQAV+MAP  ILA+QH   ++   +   +++EI+TG    
Sbjct: 297 VGAGKTLVAFMALLRAVEAGGQAVLMAPTEILARQHLMGLQPLAEQAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A RR  L  +  G   I++GTHA+FQ  + +  L L +VDEQHRFGV+QRL+L +K    
Sbjct: 357 AERRAKLAALERGDIQILVGTHAVFQADVSFADLRLAVVDEQHRFGVRQRLELGRKGRLA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GR+ I+T ++  +R+DEVIER++  +SE
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSILDEKPPGRQAIRTALVSTSRMDEVIERMRHAISE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE + S+  +  +RF  L   F    + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVEESEVSDLTAAEDRFKRLRAAFGEGVVGLVHGQMPPAEKDAAMRAFQTG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG+DV +A+I+++E AE FGLAQLHQLRGRVGRGE  S+C+L+Y  PL
Sbjct: 537 ETKVLVATTVIEVGVDVPNATIMVVERAEIFGLAQLHQLRGRVGRGEGASTCLLMYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL VL+ +EDGF+IAE DLK R  G+++G  QSG+P+F +A  E    LL +A+
Sbjct: 597 SETGRQRLEVLRESEDGFVIAETDLKMRGTGDLIGTAQSGVPRFRVADLERQAGLLAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +LT DP L   RG+++R+LL+L + +EA + I  G
Sbjct: 657 SDARKLLTDDPTLEGPRGKAVRLLLWLMRQDEAIRLISVG 696


>gi|149203842|ref|ZP_01880811.1| ATP-dependent DNA helicase RecG [Roseovarius sp. TM1035]
 gi|149142959|gb|EDM31001.1| ATP-dependent DNA helicase RecG [Roseovarius sp. TM1035]
          Length = 696

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/700 (42%), Positives = 433/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  G+G K +  L+ +        TR  DL+   P S +DR  R  +
Sbjct: 4   RPEILFPLFAGLETLEGIGPKTAQALAAL------EITRPRDLILTLPHSGVDRRRRATV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                  IVT+   + QH     +K  PY++++ D      L+FF+ + E L+ +   G 
Sbjct: 58  QGAEMPGIVTVEVTVGQHRP-PSRKGGPYRVVVEDAATSFHLVFFHARDEYLRKMLPTGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK +       +VHP ++    +  + P  E VY L  G++  +  K +  AL R
Sbjct: 117 RRIVSGKAELFDGIAQIVHPDHMLPLEEASDIPDFEPVYPLTAGVTQRVMTKGVHSALMR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+     +  +P  A A    H P++A+D     PARERLAYDEL+A Q+ L 
Sbjct: 177 LPDLTEWIDPVQKAQAGWPDWAAAVRAAHRPQEARDLSPAHPARERLAYDELMAHQMTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + ++  G      G +  ++L  +P++ T +Q  AI +I  DM+   RM R+LQGD
Sbjct: 237 LARSKLRRAKGRATVGTGVLQARVLMALPYALTGAQTRAIAEIAADMAAPQRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA  A+  AVEAGGQ V+MAP  ILA+QH + ++   ++  +++EI+TG    
Sbjct: 297 VGAGKTLVAFKALLIAVEAGGQGVMMAPTEILARQHLQGLRPLAESAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR  L  +A G   I++GTHA+FQ  +++  L L IVDEQHRFGV+QRL+L +K    
Sbjct: 357 TERRAKLAALARGDIQILVGTHAVFQKDVEFSDLRLAIVDEQHRFGVRQRLELGKKGAQA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GR+PIKT +I + RIDEV++ L+  L+E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRQPIKTALISMGRIDEVVDHLRRALAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +  +  S  ERF  L        + ++HG+M   DK++ M +F+ G
Sbjct: 477 GRQAYWVCPLVEESEVVDLSSAEERFKRLRAALGEGVVGLVHGQMPPEDKDAAMAAFQRG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG+DV +ASI++IE AE FGLAQLHQLRGRVGRG+  S+C+L+Y  PL
Sbjct: 537 DTSVLVSTTVIEVGVDVPNASIMVIERAESFGLAQLHQLRGRVGRGQAASTCLLMYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S++   RL+ +++TEDGF I+E DL+ R  G+++G  QSG+P+F IA  E   +L+ +A+
Sbjct: 597 SESGERRLTTMRDTEDGFRISEVDLEMRGAGDLIGTAQSGLPRFRIADLESQSALMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDL S RG++ R+LL+L + ++A + I  G
Sbjct: 657 SDARKLLHDDPDLVSERGRAARVLLWLMEQDQAIRLISVG 696


>gi|254510885|ref|ZP_05122952.1| DEAD/DEAH box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221534596|gb|EEE37584.1| DEAD/DEAH box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 696

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/700 (41%), Positives = 432/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +  L ++            D+LF  P + IDR  R  I
Sbjct: 4   RPEQLFPLFAGLETLDGVGPKTAQLLGQL------GIESPRDVLFALPYAVIDRRRRDSI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                   +T+   I  H   + +    Y+I + D   +  L+FF+ + + LK +  +G 
Sbjct: 58  QGADFPTTLTVEVTIGTHRPARNKGG-AYRIHVEDSQTDFQLVFFHARGDYLKKLLPQGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++         P  E VY L  G++     K    AL+R
Sbjct: 117 RRVVSGKLELFDGMAQMVHPDHMVAPENAGELPEFEPVYHLTQGVTQKTAYKAAQSALAR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P L EW +   + ++ +P  A A    H+P+ A D    + ARERLAYDEL A Q+ L 
Sbjct: 177 VPELAEWADPAQVARQGWPGWASAMRAAHHPQGADDVAPFALARERLAYDELFAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R++ +K  GI     G +  ++L ++P+ PT +Q  A+++I  DM+ + RM R+LQGD
Sbjct: 237 LARQRERKARGIVSVGTGTLQSRVLASLPYRPTGAQARAVEEISADMASETRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH + ++   +   +++EI+TG    
Sbjct: 297 VGAGKTLVAFMALLIAVEAGGQGVMMAPTEILARQHLDGLRPLAEEAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A RR  L  +  G   I++GTHA+FQ+ +++  L L IVDEQHRFGV+QR++L++K    
Sbjct: 357 AERRAKLAALKQGDIQILVGTHAVFQEDVEFKALRLAIVDEQHRFGVRQRMELSEKGQRA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPI+T I+   R++EV+  L+  +  
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTAIVSTQRMEEVVTHLRNAIDA 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           GK+ YW+CP ++E + S+  +  ERF  L        + ++HG+M  +DK++ M +F+ G
Sbjct: 477 GKQCYWVCPLVDESEVSDLTAAEERFKRLRALLGDDVVGLVHGQMPPVDKDAAMAAFQAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG+++ +A+I++IE AE FGLAQLHQLRGRVGRGE+ S+C+L+Y PPL
Sbjct: 537 RTKVLVATTVIEVGVNIPNATIMVIERAEIFGLAQLHQLRGRVGRGEDASTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL VL+ TEDGF IAE DL+ R  G+++G  QSG+PKF IA  E    L+ +A+
Sbjct: 597 SEGGRKRLEVLRETEDGFRIAETDLQMRGAGDLIGTAQSGLPKFRIADLERQAGLMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L+ DP LTS RGQ+ R+LL+L + ++A + I  G
Sbjct: 657 SDARTLLSADPKLTSDRGQAARVLLWLMKQDQAIRLISVG 696


>gi|110679833|ref|YP_682840.1| ATP-dependent DNA helicase RecG [Roseobacter denitrificans OCh 114]
 gi|109455949|gb|ABG32154.1| ATP-dependent DNA helicase RecG, putative [Roseobacter
           denitrificans OCh 114]
          Length = 696

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/700 (41%), Positives = 432/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L  LF+ L T  GVG K +   + +            DLLF  P + +DR +R  I
Sbjct: 4   RPEALFGLFSSLETLDGVGPKTAANFAGL------GVHAPRDLLFTLPINVLDRRHRNTI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +    I T+   I  H   + +    Y+I + D      L+FF+ + + L  +  +G 
Sbjct: 58  EGLDCPTITTVAVTIGAHRPPRTKG-AAYRISVVDAEAAFQLVFFHARGDYLARILPQGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK+++      MVHP YI   ++    P  E VY L +G++  +  K    AL  
Sbjct: 117 RRVVSGKLERFDGVYQMVHPDYILSETEVDTIPPFEPVYPLTSGITQKVMFKATRAALKL 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+   ++K  +P + EAF + H P+  +D   T+ ARERLAYDE+ A Q+ L 
Sbjct: 177 LPDLTEWIDPGQIRKAGWPDVREAFTLAHRPQAPQDISITAAARERLAYDEMFAHQMTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   +++ G   +  G +  +++ ++P+  T +Q+ AI D+ +DM++  RM R+LQGD
Sbjct: 237 LARLTERQKKGRATHGTGDLQMRLIESLPYPLTGAQQRAIADVNRDMAEAVRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVE GGQ V+MAP  ILA+QH + +K   ++  + ++I+TG    
Sbjct: 297 VGAGKTLVAFLALLRAVEGGGQGVLMAPTEILARQHLQSLKPMAEHVGVRLDILTGRDTG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R   LE +A+G   +++GTHA+FQ  + +  L L ++DEQHRFGVQQR+ L QK  A 
Sbjct: 357 KERTAKLEDLANGNIGVLVGTHAVFQKGVTFSDLRLAVIDEQHRFGVQQRMALGQKGAAV 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GR PIKT ++ ++R++EV+ RL  V+  
Sbjct: 417 DVLVMTATPIPRSLALAQFGDMDVSVLDEKPPGRMPIKTALVSVDRMEEVVSRLCAVVEG 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE +  +  +  +RF  L        + ++HG+M   +K++ M  F++G
Sbjct: 477 GRQCYWVCPLVEESEVVDLTAAEDRFKKLRAALGEGVVGLVHGQMPAAEKDAAMAGFESG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +A+I++IE AE FGLAQLHQLRGRVGRG   S+C+LLY PPL
Sbjct: 537 QTKVLVATTVIEVGVNVPNATIMVIERAEFFGLAQLHQLRGRVGRGTAASTCLLLYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S++   RL VL+ TEDGF+IAE DLK R  G+++G  QSG+P+F IA  E    L++IA+
Sbjct: 597 SESGQRRLEVLRETEDGFMIAETDLKMRGAGDVIGTAQSGLPRFWIADLERQAGLMQIAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L + RGQ+ R+LL+L + +E+ + I  G
Sbjct: 657 SDARKLLADDPGLATPRGQAARMLLWLLRKDESIRLITVG 696


>gi|77463177|ref|YP_352681.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides 2.4.1]
 gi|77387595|gb|ABA78780.1| Haem peroxidase [Rhodobacter sphaeroides 2.4.1]
          Length = 695

 Score =  638 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/700 (42%), Positives = 422/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +   + +        TR  DLLF  P S +DR  R  I
Sbjct: 3   RPEILFPLFADLETLEGVGPKSAKAFAGL------GVTRPKDLLFLLPHSAVDRSRRSSI 56

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            ++      T+   +  H     +K  PY+I + D   E TL+FF+ + + L  +   G 
Sbjct: 57  RDVLPPVTATVEVTVGAHYP-SRRKGGPYRIAVRDAEAEFTLVFFHARGDYLMKLLPPGE 115

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+I+       MVHP ++    +    P  E VY L  GL+  L  K    AL R
Sbjct: 116 QRIVSGRIEVFDGMAQMVHPDHVLPPEEAAALPACEPVYPLTAGLTQKLVAKAASAALLR 175

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+  L  ++ +P  A A    H P    +   T+ AR RLAYDEL A Q+ L 
Sbjct: 176 LPELAEWIDPGLKAREGWPDWAAAVRAAHAPEAPAEVTPTAAARRRLAYDELFAHQLTLT 235

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G+     G + +++L ++PF+PT +Q  A+ +I  DM+   RM R+LQGD
Sbjct: 236 LARASRRRGRGVASVGTGALQRRVLESLPFAPTAAQTRAVAEIAADMAAPQRMNRLLQGD 295

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+A AVEAGGQ V+MAP  ILA+QH   +    +   I + ++TG    
Sbjct: 296 VGAGKTLVAFLALAIAVEAGGQGVMMAPTEILARQHLASLAPMAEAAGIRLALLTGRDKG 355

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R   L  +A G+  +++GTHA+FQ  + ++ L L IVDEQHRFGV QR++L  K  A 
Sbjct: 356 AERAAKLAALAAGEIGVLVGTHAVFQKDVIFHDLRLAIVDEQHRFGVAQRMELGAKGAAA 415

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L S GD+D+S + EKP GR P+KT ++   RIDEV+  L   ++E
Sbjct: 416 DVLVMTATPIPRSLALASYGDMDVSVLDEKPPGRTPVKTALVSCERIDEVVASLAHAVAE 475

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +E+ +  ++ S   RF  L       ++ ++HG+M   +K++ M  F  G
Sbjct: 476 GRQAYWVCPLVEDSEAVDYASAEARFQHLRAALGEGTVGLVHGQMPPAEKDAAMARFVAG 535

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+LLY  PL
Sbjct: 536 ETRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLLYQAPL 595

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +++   RL++L+ TEDGF IAEEDL  R  G+++G  QSG+P+F IA  E   +L+E+A+
Sbjct: 596 AESGQRRLTILRETEDGFRIAEEDLAIRGAGDLIGTAQSGLPRFRIADLERQSALMEVAQ 655

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L S RG++ R+LL+L   + A + +  G
Sbjct: 656 SDARKLLHDDPTLASPRGEAARLLLWLLDQDRAIRLLSVG 695


>gi|332558051|ref|ZP_08412373.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides WS8N]
 gi|332275763|gb|EGJ21078.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides WS8N]
          Length = 695

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 294/700 (42%), Positives = 421/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +   + +        TR  DLLF  P S +DR  R  I
Sbjct: 3   RPEILFPLFADLETLEGVGPKSAKAFAGL------GVTRPKDLLFLLPHSAVDRSRRASI 56

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            ++      T+   +  H     +K  PY+I + D   E TL+FF+ + + L  +   G 
Sbjct: 57  RDVLPPVTATVEVTVGAHYP-SRRKGGPYRIAVRDAGAEFTLVFFHARGDYLMKLLPPGE 115

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+I+       MVHP ++    +    P  E VY L  GL+  L  K    AL R
Sbjct: 116 QRIVSGRIEVFDGMAQMVHPDHVLPPEEAAALPACEPVYPLTAGLTQKLVAKAASAALLR 175

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+  L  ++ +P  A A    H P    +   T+ AR RLAYDEL A Q+ L 
Sbjct: 176 LPELAEWIDPGLKAREGWPDWAAAVRAAHAPEAPAEVTPTAAARRRLAYDELFAHQLTLT 235

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G+     G + +++L  +PF+PT +Q  A+ +I  DM+   RM R+LQGD
Sbjct: 236 LARASRRRGRGVASVGTGALQRRVLERLPFAPTAAQTRAVAEIAADMAAPQRMNRLLQGD 295

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+A AVEAGGQ V+MAP  ILA+QH   +    +   I + ++TG    
Sbjct: 296 VGAGKTLVAFLALAIAVEAGGQGVMMAPTEILARQHLASLAPMAEAAGIRLALLTGRDKG 355

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R   L  +A G+  +++GTHA+FQ  + ++ L L IVDEQHRFGV QR++L  K  A 
Sbjct: 356 AERAAKLAALAAGEIGVLVGTHAVFQKDVVFHDLRLAIVDEQHRFGVAQRMELGAKGAAA 415

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L S GD+D+S + EKP GR P+KT ++   RIDEV+  L   ++E
Sbjct: 416 DVLVMTATPIPRSLALASYGDMDVSVLDEKPPGRTPVKTALVSCERIDEVVASLAHAVAE 475

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +E+ +  ++ S   RF  L       ++ ++HG+M   +K++ M  F  G
Sbjct: 476 GRQAYWVCPLVEDSEAVDYASAEARFQHLRAALGEGTVGLVHGQMPPAEKDAAMARFVAG 535

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+LLY  PL
Sbjct: 536 ETRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLLYQAPL 595

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +++   RL++L+ TEDGF IAEEDL  R  G+++G  QSG+P+F IA  E   +L+E+A+
Sbjct: 596 AESGQRRLTILRETEDGFRIAEEDLAIRGAGDLIGTAQSGLPRFRIADLERQSALMEVAQ 655

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L S RG++ R+LL+L   + A + +  G
Sbjct: 656 SDARKLLHDDPTLASPRGEAARLLLWLLDQDRAIRLLSVG 695


>gi|254451504|ref|ZP_05064941.1| ATP-dependent DNA helicase RecG [Octadecabacter antarcticus 238]
 gi|198265910|gb|EDY90180.1| ATP-dependent DNA helicase RecG [Octadecabacter antarcticus 238]
          Length = 690

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 286/697 (41%), Positives = 422/697 (60%), Gaps = 8/697 (1%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            L PLF  L +  G+G K +  L        AN  +  DLLF  P S +DR  R  I ++
Sbjct: 1   MLWPLFGSLESLDGIGPKSAQAL------IAANIEKPRDLLFTLPHSGVDRRRRDSILDV 54

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
               + T+   I QH +      RPY++ + D      L+FF   +E L+     G++  
Sbjct: 55  HAPAVCTVEVTIGQH-TAPSSPGRPYRVTVEDQRTTFQLVFFRSHSEYLRKQLPTGQRRV 113

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           V+GKI+       MVHP +I    +    PL E VY L   ++     K   + L ++P 
Sbjct: 114 VSGKIELFDGVGQMVHPDHILTPDEAEQIPLFEPVYPLTGTMTQKAMFKATADLLGQVPG 173

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L EWI+  L  ++ +P    A  + H P  + +   TS AR+RLAYDE+LA Q+ L L R
Sbjct: 174 LAEWIDPALRAREGWPDWGAALALAHRPMSSAELSSTSAARQRLAYDEVLAHQLTLALAR 233

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            Q ++  G     +G    K+L  + FSPT +Q  A  +I +DM++  RM R+LQGDVGS
Sbjct: 234 AQQRRGKGRVTAGDGARQAKVLAALGFSPTGAQIRATAEIAEDMAKPYRMNRLLQGDVGS 293

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVAL+++  AVEAGGQ V+MAP  ILA+QH E ++   +   +++E++TG      R
Sbjct: 294 GKTLVALMSLLNAVEAGGQGVMMAPTEILARQHLEGLRPLAEGAGVVLELLTGRDKGGER 353

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R  LE +A G   I++GTHA+FQ  + +  L L I+DEQHRFGV QR++L  K  +  VL
Sbjct: 354 RAKLEALAAGDIQILVGTHAVFQKDVVFADLRLAIIDEQHRFGVAQRMELGAKGASVDVL 413

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPR+L L   GD+D+S + EKP GR P+ T ++  +++D+VIERL+  +++G++
Sbjct: 414 VMTATPIPRSLALAQYGDMDVSVLDEKPPGRSPVTTALVATSKMDQVIERLRAAVADGRQ 473

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCK 543
            YW+CP +EE + S+  +  +RF  L        + ++HG+M   +K++ M  F +G  K
Sbjct: 474 CYWVCPLVEESEVSDMTAAEDRFKRLRAALGEDVVGLVHGQMPPANKDAAMRKFVSGETK 533

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+L+Y  PLS++
Sbjct: 534 VLVATTVIEVGVNVPNASIMVIERAESFGLAQLHQLRGRVGRGATKSTCLLMYQAPLSES 593

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              RL +++ TEDGF I+EEDL  R  G+++G  QSG+P F IA  E   +L+ +A+ DA
Sbjct: 594 GRQRLEIMRETEDGFRISEEDLAMRGAGDVIGTAQSGLPIFRIADLERQTALMALAQTDA 653

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           + +L  DP L S RG + R+LL+L + ++A + I  G
Sbjct: 654 RKLLLDDPKLESARGTAARVLLWLMEQDKAIRLISVG 690


>gi|163731898|ref|ZP_02139345.1| ATP-dependent DNA helicase RecG, putative [Roseobacter litoralis
           Och 149]
 gi|161395352|gb|EDQ19674.1| ATP-dependent DNA helicase RecG, putative [Roseobacter litoralis
           Och 149]
          Length = 696

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 293/700 (41%), Positives = 432/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L  LF+ L T  GVG K +   + +            DLLF  P + +DR  R  I
Sbjct: 4   RPEALFGLFSSLETLDGVGPKTAANFAGL------GVHAPRDLLFTLPINVLDRQRRESI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +    I T+T  I  H   + +    Y+I ++D      L+FF+ + +       EG 
Sbjct: 58  EGLEYPAITTVTVTIGAHRPPRTKG-AAYRITVSDAETSFQLVFFHARGDYWARALPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK+++      MVHP YI   S+    P  E VY L +G++  +  K     L  
Sbjct: 117 RRVVSGKLERFDGLPQMVHPDYIVPESEIDAIPSFEPVYPLTSGITQKVMFKASQSVLKL 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P + EWI+   ++K  +P++ +A  + H P+ + D   T+ ARERLAYDE+LA Q+ L 
Sbjct: 177 VPEMAEWIDPGQMRKAEWPNVVQALALAHRPQSSADIAITAAARERLAYDEMLAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   +++ G     +G + Q+++ ++P+  T +Q  A+ D+  +M +  RM R+LQGD
Sbjct: 237 LARLTERQKKGHATRGDGVLQQRLITSLPYPLTGAQLRAVSDVNTNMGEAVRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A+  AVE GGQ V+MAP  ILA+QH + +K   +   + +EI+TG    
Sbjct: 297 VGSGKTLVAFLALLRAVEGGGQGVLMAPTEILARQHLQSLKPLAEKVGVRLEILTGRDTG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R K L+ +A+G   +++GTHA+FQ  + +  L L ++DEQHRFGVQQRL L QK  A 
Sbjct: 357 KERNKKLDDLANGDIGVLVGTHAVFQKGVTFDDLRLAVIDEQHRFGVQQRLALGQKGAAV 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GR PIKT ++ + R+DEV+ RL+ V+ E
Sbjct: 417 DVLVMTATPIPRSLALAQFGDMDVSILDEKPPGRMPIKTALVSVERMDEVVSRLRAVVEE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE +  +  +  ER+  L   F    + ++HG+M   +K++ M  F+ G
Sbjct: 477 GRQCYWVCPLVEESEVVDLTAAEERYKHLRAAFGEGVVGLVHGQMPASEKDAAMARFEAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             KLL+ATTVIEVG++V +A+I++IE AE FGLAQLHQLRGRVGRGE  S+C+L+Y PPL
Sbjct: 537 ETKLLVATTVIEVGVNVPNATIMVIERAEFFGLAQLHQLRGRVGRGEAASTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           SK+   RL VL+ TEDGF+IAE DLK R  G+++G  QSG+P+F IA  E    L+ IA+
Sbjct: 597 SKSGQHRLEVLRQTEDGFVIAETDLKMRGAGDVIGTAQSGLPRFWIADLERQAGLMAIAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L +DP L+S RGQ+ R+LL+L + +E+ + I  G
Sbjct: 657 SDARKLLAEDPGLSSPRGQAARMLLWLLRKDESIRLISVG 696


>gi|83942326|ref|ZP_00954787.1| ATP-dependent DNA helicase RecG [Sulfitobacter sp. EE-36]
 gi|83846419|gb|EAP84295.1| ATP-dependent DNA helicase RecG [Sulfitobacter sp. EE-36]
          Length = 696

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 295/700 (42%), Positives = 437/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +   +++            DLLF  P S IDR  +P +
Sbjct: 4   RPEALFPLFAKLETLEGVGPKTAQNFAQL------GVMAPRDLLFTLPYSGIDRRLQPSV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            +      VT+   +  H +   +    Y+I + D      L+FF+ + +  K    EG 
Sbjct: 58  KDAILPATVTVAVTVGAHRAPANKGG-AYRIHVEDSATAFQLVFFHARGDYWKRQMPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+++       MVHP ++   ++  + P  E VY L +G++  L  K    ALSR
Sbjct: 117 RRVVSGRVELFDGIPQMVHPDFVVPEAEAGDIPTFEPVYPLTSGITQKLMYKATRAALSR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P + EWI+ +   ++++P   +A    H P    D    +PAR RLAYDELLA Q+ L 
Sbjct: 177 VPEVGEWIDPNQKNQENWPDFPDALQQAHAPNDMADLSAAAPARARLAYDELLAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + +++ G     +G + Q++L  +P++PT +Q  AI +I +DM+   RM R+LQGD
Sbjct: 237 LARAKDRRKAGRKTVGDGHLQQRVLGALPYAPTGAQTRAIAEIAKDMASGARMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E ++   +   +++E++TG    
Sbjct: 297 VGAGKTLVAFMALLRAVEAGGQGVLMAPTEILARQHLEGLRPLAEQAGVVLELLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR  L  +  G   I++GTHA+FQ  + +  L L +VDEQHRFGV+QRL+L +K  A 
Sbjct: 357 PERRAKLSALESGAIQILVGTHAVFQADVAFGDLRLAVVDEQHRFGVRQRLELGKKGQAV 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPI+T +I  +R++EV+ RL+  +SE
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTALIATDRMEEVVTRLRAAISE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE + S+  +   RF  L        + ++HG+M   DK++ M +F+ G
Sbjct: 477 GRQCYWVCPLVEESEVSDLIAAEARFKHLRAALGEGVVGLVHGQMPPADKDAAMRAFQQG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             KLL+ATTVIEVG+DV +ASII+IE AE FGLAQLHQLRGRVGRG+  S+C+L+Y  PL
Sbjct: 537 QTKLLVATTVIEVGVDVPNASIIVIERAESFGLAQLHQLRGRVGRGQAASTCLLMYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S++   RL VL+ +EDGF+IAE DLK R  G+++G  QSG+P+F +A  E   +L+++A+
Sbjct: 597 SESGRQRLEVLRESEDGFVIAETDLKMRGTGDLIGTAQSGVPRFRVADLEKQAALMQVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDLT+ RG++ R+LL+L + +EA + I  G
Sbjct: 657 SDARALLAVDPDLTTPRGKAARLLLWLMRQDEAIRLISVG 696


>gi|294083795|ref|YP_003550552.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663367|gb|ADE38468.1| DEAD/DEAH box helicase domain protein [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 696

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 288/702 (41%), Positives = 434/702 (61%), Gaps = 14/702 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L  LFA  ++  GVG K +  L K +       +  ID+L + P + IDR  +P +
Sbjct: 6   RPQELFQLFAATTSLPGVGAKLAAILEKRVG------SYVIDVLRHLPIAIIDRSQKPPL 59

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             + +  I T    + +H       RRP+++   + TG I L+FF+ + + ++ +   G 
Sbjct: 60  DAVIDGAIATFDIIVVKHDKPPRGVRRPWRVFCQNDTGSIELVFFHARDDYIQRLLPVGE 119

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  ++G+ +   NR+ M HP Y+    +  + P IE VY L  GL+  + ++ I  AL+ 
Sbjct: 120 RRIISGRTEIFNNRVQMAHPDYVVKPDEMASMPEIEPVYPLTAGLTPKVLRRAITAALAT 179

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P LPEWI   ++   ++P  A A   +H P+   D    +PAR RLA+DELLA QIAL 
Sbjct: 180 IPTLPEWIPPSIMATNNWPDFASAMRTVHAPQNEADLLPNNPARARLAFDELLANQIALN 239

Query: 242 LMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           ++R+Q    +        G + + ++ N+PF+ TK+Q +AI +I  D     RMLR+LQG
Sbjct: 240 MVRQQAADTVPGRIFAGTGTLTRALMDNLPFALTKAQTNAIAEIKSDQESGKRMLRMLQG 299

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG-NM 359
           DVGSGKTLVAL AM   VE+G QA ++ P  +LA+QHY+ + K          ++ G   
Sbjct: 300 DVGSGKTLVALAAMLHVVESGAQAALLVPTEVLARQHYQSLNKMLAPIGKSASLLLGQGR 359

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             + R+  L  +A G   I++GTHAL  +++ +  L L +VDEQHRFGV+QRL L QK  
Sbjct: 360 TGSGRKDTLSGLADGTIDIVVGTHALLSENVAFADLGLAVVDEQHRFGVRQRLILGQKGN 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL+MTATPIPR+L +T+ GD++ S++ EKPAGR  I T ++P +R+D+VI+ ++  L
Sbjct: 420 GVDVLVMTATPIPRSLAMTAYGDLEQSRLNEKPAGRLAIDTRVMPNDRLDQVIDGIRRAL 479

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
             GK+AYWICP +EE  + +  +  +RF SL     +  +A+ HG+M   +++  M +F+
Sbjct: 480 DAGKRAYWICPLVEESDKLDIAAAEDRFASLVRALPAHKVALAHGKMKAPERDEAMQAFR 539

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G+ +LL+ATTV+EVG+DV +ASI+IIE+AE FGLAQLHQLRGRVGRG + SSCIL+Y P
Sbjct: 540 DGSAQLLVATTVVEVGVDVPEASIMIIEHAERFGLAQLHQLRGRVGRGADKSSCILVYAP 599

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           P+S  S TRL+V+++TEDGF+IAEEDLK R  GE LG +QSG+P+F++A    H  LL +
Sbjct: 600 PISDTSKTRLTVMRDTEDGFVIAEEDLKLRGPGEFLGQRQSGVPEFILADLGAHADLLSL 659

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR +A+ + T    LT        +LL L++ + A +++ AG
Sbjct: 660 ARTEARRMATDGTALTYS-----DMLLSLFERDSAVRYLAAG 696


>gi|158423349|ref|YP_001524641.1| helicase [Azorhizobium caulinodans ORS 571]
 gi|158330238|dbj|BAF87723.1| helicase [Azorhizobium caulinodans ORS 571]
          Length = 698

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 307/701 (43%), Positives = 439/701 (62%), Gaps = 4/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLFAPL+T  G+G K      +++   N    R IDLLF+ PS  IDR  RP 
Sbjct: 1   MRPALLDPLFAPLTTLPGIGPKMVRPFGRLLGREN---PRVIDLLFHMPSGLIDRRARPT 57

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E   E  VT+   +  HS+    +R P++  ++D +G++T++ F  +   ++ +   G
Sbjct: 58  IFEAEPETDVTLEVRVDGHSAPPPGRRAPHRTFVSDASGDLTVVHFNIERARIERLLPVG 117

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               + G++        M HP  I   +     P +E  Y L  GL+    ++ +  AL+
Sbjct: 118 ETRWLCGRVTLYDGMRQMTHPDRILDAAGLAKLPPVEPKYPLTEGLAGGHVRRAMEAALA 177

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           R+P LPE I  +LL++  +PS  EA   IH P    D   T  A ERLA+DEL A Q+ L
Sbjct: 178 RVPELPEAIPPELLERGDWPSFREALKRIHQPETPVDGLPTGRAWERLAFDELYAHQVTL 237

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R+   K  G P   +G++A  IL+ +PF  T +QE A+  I  D++   RMLR+LQG
Sbjct: 238 ALVRQTQVKAGGRPTRGDGRLAAAILKALPFRLTSAQEEALAAIRADLAADTRMLRLLQG 297

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+A AAA+EAG QA +MAP  ILA+QH E I        I V ++TG   
Sbjct: 298 DVGSGKTVVALLAAAAAIEAGRQAALMAPTEILARQHLETIAPLAAAAGIEVAVLTGREK 357

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R   LE +A G+  +++GTHAL QD + +  L L IVDEQHRFGV+QRL  ++K  A
Sbjct: 358 GRTRAGILEGLASGRIGLVVGTHALIQDDVAFADLALAIVDEQHRFGVEQRLTFSRKGAA 417

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +LLMTATPIPRTLVLT  GD+D S++ EKP GRKP+ T  + + R+DEV+  L   L 
Sbjct: 418 VDMLLMTATPIPRTLVLTLFGDMDSSELREKPPGRKPVDTRSVSLERLDEVVGALGRQLR 477

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKN 539
           +G +AYWICP +EE   S+  +  ER   L + F    + ++HGRMS  DK++ M  F +
Sbjct: 478 DGAQAYWICPLVEESDTSDLAAATERAAHLKKVFGEKAVELVHGRMSGADKDAAMARFAS 537

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L+ATTV+EVG++V +A++++IE+AE FGLAQLHQLRGRVGRGE+ S+C+LL+  P
Sbjct: 538 GEARILVATTVVEVGVNVPNATLMVIEHAERFGLAQLHQLRGRVGRGEKASTCLLLFRGP 597

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+ S  RL++L+ +EDGF IAEEDL+ R EG++LG KQSG+P F +A+ E+H +L+  A
Sbjct: 598 LSETSKARLAILRESEDGFRIAEEDLRLRGEGDVLGTKQSGLPGFKVARMEVHGALVSQA 657

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R  A  ++  +PDL    G+ +R LLY+ + + A + + AG
Sbjct: 658 RDAAARLVPGNPDLEGPEGERVRTLLYVQERDAAVRLLSAG 698


>gi|220926924|ref|YP_002502226.1| ATP-dependent DNA helicase RecG [Methylobacterium nodulans ORS
           2060]
 gi|219951531|gb|ACL61923.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 704

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 302/703 (42%), Positives = 439/703 (62%), Gaps = 4/703 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           +RPS L+PLFAP +   G G K ++ + K++     +  R +DLLF+ P   +    +  
Sbjct: 3   LRPSLLDPLFAPATVLPGAGPKMAVLVDKLLGT-PEHPARVVDLLFHLPHGGVAHQLKGS 61

Query: 61  ISEISEERIVTITGYISQHSSFQ-LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+       VT+   +  H   Q +  RRPY++L+ D TG+I+L+FF      ++ +   
Sbjct: 62  IAAAPTGEPVTLCVTVVAHRPPQQVGGRRPYRVLVEDATGDISLVFFNMPRARIEKMLPA 121

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  V+G+I+       MVHP  I         P +E +Y    GL+  +  K+   AL
Sbjct: 122 GARRYVSGRIELWDGFRQMVHPARILDEKGFSELPSVEPLYGATEGLTSRVIGKLAQGAL 181

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPA--RERLAYDELLAGQ 237
            RLP LPEW +   L ++S+PS AEA    H P K    E       R RLAYDELLA Q
Sbjct: 182 ERLPDLPEWQDPAWLARQSWPSFAEALRAEHRPDKPPPAEGEPAPATRRRLAYDELLASQ 241

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+R + ++  G     +G+++++I   +PF  T +Q  A+ +I  DM    RMLR+
Sbjct: 242 LALALVRSRMRRPPGRINAGDGELSRRIEAALPFRLTGAQVRALAEIRGDMRSDRRMLRL 301

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT VA++AMA+A+EAG QA +MAP  ILA+QH E ++   +   + + ++TG
Sbjct: 302 LQGDVGSGKTAVAMLAMASAIEAGRQAALMAPTEILARQHAERLRPLAEAAGLPLVLMTG 361

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               A RR  L  +A G   I IGTHALFQ+ + +  L L +VDEQHRFGV QRL L  K
Sbjct: 362 RDRNAERRATLAGLAEGSIPIAIGTHALFQEEVAFRDLGLAVVDEQHRFGVHQRLALGAK 421

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             A  +L+MTATPIPRTL LT  GD+++S + EKPAGR+PI T ++   R+DEV+  L+ 
Sbjct: 422 GAAVDILVMTATPIPRTLALTCFGDMEVSILDEKPAGRQPIATRLVSTERLDEVVAGLER 481

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            L+ G++ YWICP + E + ++  +  ERF  L +HF  ++ ++HG+M   +K+  M+ F
Sbjct: 482 ALARGERVYWICPLVAESEFTDLAAAEERFADLRQHFGEAVGLVHGKMPGREKDEAMERF 541

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             GT ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG   S+C+LLY 
Sbjct: 542 AAGTTRILVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSGASTCLLLYR 601

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PL + +  RL +++ TEDGF IAEEDL+ R EGE+LG +QSG+  F +A+PE    LL 
Sbjct: 602 GPLGQVARARLEMMRETEDGFRIAEEDLRLRGEGEVLGTRQSGLAAFRLARPEADGDLLL 661

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            AR DA+ I+ +DP L S RG+++R LLYL++ + A + + AG
Sbjct: 662 AARDDARLIVERDPALKSERGRALRTLLYLFERDAAVKLLGAG 704


>gi|85702770|ref|ZP_01033874.1| ATP-dependent DNA helicase RecG [Roseovarius sp. 217]
 gi|85671698|gb|EAQ26555.1| ATP-dependent DNA helicase RecG [Roseovarius sp. 217]
          Length = 696

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 292/700 (41%), Positives = 429/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  G+G K +  L+ +        TR  DL+   P S +DR  R  +
Sbjct: 4   RPEILFPLFAGLETLEGIGPKTAQSLAAL------EITRPRDLILTLPHSAVDRRRRATV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                  IVT+   + QH +   +K  PY++++ D      L+FF+ + + L+ +   G 
Sbjct: 58  QGADLPGIVTVEVTVGQHRA-PSRKGGPYRVVVEDAATSFHLIFFHARDDYLRKMLPTGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK +       MVHP ++    +    P  E VY L  G++  +  K    AL R
Sbjct: 117 RRIVSGKAELFDGIAQMVHPDHMLPVEEAGEIPDFEPVYPLTAGVTQRVMAKGAHSALMR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+     +  +P   +A    H P +A+D     P RERLAYDEL+A Q+ L 
Sbjct: 177 LPELAEWIDPVQKAQAGWPDWVDAIRSAHAPDEARDLSPAHPTRERLAYDELMAHQMTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + ++  G      G +  K+L  +P++ T +Q  AI +I  DM+   RM R+LQGD
Sbjct: 237 LARSKLRRAKGRETIGTGTLQAKVLAALPYALTGAQTRAIAEIAADMAAPQRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA  A+  AVEAGGQ V+MAP  ILA+QH + ++   ++  +++EI+TG    
Sbjct: 297 VGAGKTLVAFKALLIAVEAGGQGVMMAPTEILARQHLQGLRPLAESAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A RR  L  +  G   I++GTHA+FQ  +++  L L IVDEQHRFGV+QRL+L +K    
Sbjct: 357 AERRAKLAALKRGDIQILVGTHAVFQKDVEFADLRLAIVDEQHRFGVRQRLELGKKGAQA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPIKT ++ + RIDEV++ L+  ++E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIKTALVSMGRIDEVVDHLRRAIAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +  +  S  ERF  L        + ++HG+M   DK++ M +F+ G
Sbjct: 477 GRQAYWVCPLVEESEVVDLSSAEERFKRLRAALGEGIVGLVHGQMPPEDKDAAMAAFQRG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG+DV +ASI++IE AE FGLAQLHQLRGRVGRG+  S+C+L+Y  PL
Sbjct: 537 ETSVLVSTTVIEVGVDVPNASIMVIERAESFGLAQLHQLRGRVGRGQAASTCLLMYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL+ +++TEDGF I+E DL+ R  G+++G  QSG+P+F IA  E   +L+ +A+
Sbjct: 597 SEGGERRLTTMRDTEDGFRISEVDLEMRGAGDLIGTAQSGLPRFRIADLESQSALMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDL S RG++ R+LL+L + ++A + I  G
Sbjct: 657 SDARKLLHDDPDLVSDRGRAARVLLWLMEQDQAIRLISVG 696


>gi|170744355|ref|YP_001773010.1| ATP-dependent DNA helicase RecG [Methylobacterium sp. 4-46]
 gi|168198629|gb|ACA20576.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 704

 Score =  635 bits (1637), Expect = e-180,   Method: Composition-based stats.
 Identities = 296/703 (42%), Positives = 438/703 (62%), Gaps = 4/703 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           +RPS L+PLFAP +   G G K +  L +++     +  R +DLLF+ P   + R  +  
Sbjct: 3   LRPSLLDPLFAPATVLLGAGPKMAALLDRLLGT-PEHPARVVDLLFHLPHGGVARQLKGS 61

Query: 61  ISEISEERIVTITGYISQHSSFQL-QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+E      VT+   +  H   Q    RRPY++L+ DG+G+I+L+FF      ++ +   
Sbjct: 62  IAEAPTGEPVTLCVTVVAHRPPQTVGARRPYRVLVEDGSGDISLVFFNMPRARIEKMLPV 121

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  V+G+I+       MVHP  I  +    + P +E +Y    GL+     K+   A+
Sbjct: 122 GARRYVSGRIELWDGFRQMVHPARILDDKGFSDLPAVEPLYGATEGLTSRAIGKLAQGAV 181

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPA--RERLAYDELLAGQ 237
            RLP LPEW +   L ++ +P  A+A    H P      E   P   R RLAYDELLA Q
Sbjct: 182 ERLPDLPEWQDPAWLARQRWPGFAQALRAEHRPDAPPPAEGEPPPATRRRLAYDELLASQ 241

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+R + ++  G     +G ++++I   +PF  T +Q  A+ +I  DM    RMLR+
Sbjct: 242 LALALVRSRMRRPPGRINAGDGDLSRRIEAALPFRLTGAQIRALAEIRGDMRSDRRMLRL 301

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT VA++AMA+A+EAG QA +MAP  ILA+QH E ++   ++  + + ++TG
Sbjct: 302 LQGDVGSGKTAVAMLAMASAIEAGRQAAMMAPTEILARQHAERLRPLAESAGLSLVLMTG 361

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               A RR  L+ +A G   I +GTHALFQ+ + +  L L +VDEQHRFGV QRL L  K
Sbjct: 362 RDRTAERRATLKGLAEGSIAIAVGTHALFQEEVAFRDLGLAVVDEQHRFGVHQRLALGAK 421

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             A  +L+MTATPIPR+L LT  GD+++S + EKPAGR+PI T ++   RIDEV+  L+ 
Sbjct: 422 GEAVDILVMTATPIPRSLALTYFGDMEVSVLDEKPAGRQPIATRLVSTERIDEVVAGLER 481

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            L+ G++ YWICP + E +  +  +  ER   L +HF +++ ++HG+M   DK+  M  F
Sbjct: 482 ALARGERVYWICPLVAESEVIDLAAAEERCADLRQHFGAAVGLVHGKMPGRDKDEAMARF 541

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G  ++L++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG   S+C+LLY 
Sbjct: 542 ASGETRILVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGAAASTCLLLYR 601

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PL + +  RL +++ TEDGF IAEEDL+ R EGE+LG +QSG+  F +A+PE+   LL 
Sbjct: 602 GPLGQVARARLEMMRETEDGFRIAEEDLRLRGEGEVLGTRQSGLAAFRLARPEVDGDLLL 661

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            AR DA+ I+ +DP L   RG+++R+LL L++ + A + + AG
Sbjct: 662 AARDDARLIVERDPGLAGERGRALRVLLSLFERDAAVRLLGAG 704


>gi|159044059|ref|YP_001532853.1| ATP-dependent DNA helicase RecG [Dinoroseobacter shibae DFL 12]
 gi|157911819|gb|ABV93252.1| ATP-dependent DNA helicase [Dinoroseobacter shibae DFL 12]
          Length = 696

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 287/700 (41%), Positives = 433/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP+ L PLFA L T  G+GKK +  L+ +      +  R  DL+F  PSS I+R     +
Sbjct: 4   RPAALFPLFAELETLPGIGKKTAQTLAHM------DIARPRDLIFTLPSSGIERRLVDTV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                  ++T+   +++H      K RPY+I + D    ITL++F+ + + L  +   G 
Sbjct: 58  QTGPFPSVMTVPVTVTRHLP-PSGKGRPYRIEVADAATTITLVYFHARGDYLMKLLPPGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  ++G+++    +  M HP ++   ++       E VY L  G++    +K +  AL R
Sbjct: 117 RRIISGRVELYDGQAQMPHPDHVLTEAEAETLGGFEPVYPLTAGITQKTMQKAVAGALDR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P L EW +  L+ ++ +P  A A    H P+  K+    +PAR RLAYDELLA Q  L 
Sbjct: 177 VPDLAEWADPALVAQEGWPDFASALASAHAPQSMKELGPDTPARRRLAYDELLAHQTTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G  +  +G+    +L  +P++PT +Q+  I +I +D++  +RM R+LQGD
Sbjct: 237 LARAHRRRAPGRRLTGDGRRVGPVLAALPYTPTGAQQRVISEITEDLAAPHRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVAL+AM  AVEAG QAV+MAP  ILA+QH   +    +   ++VE++TG    
Sbjct: 297 VGAGKTLVALVAMLLAVEAGTQAVMMAPTEILARQHLAALLPLAEAAGVVVEVLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R   L  +A G  HI++GTHA+FQD + ++ L L ++DEQHRFGV++R++L  K  A 
Sbjct: 357 RERAAKLAALAAGDIHILVGTHAVFQDDVAFHDLGLAVIDEQHRFGVRERMRLGAKGAAV 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L + GD+D+S + EKP GR P+KT ++  +R+DE++  L   LSE
Sbjct: 417 DVLVMTATPIPRSLALVTYGDMDVSILDEKPPGRTPVKTALVSADRLDELLAHLDAALSE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE +     +  ERF  L   F    + ++HG+M   +K++ M  F  G
Sbjct: 477 GRQVYWVCPLVEESETLALTAAEERFKHLRARFGEGRVGLVHGQMPVAEKDAAMADFVAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LL+ATTVIEVG+DV +ASI++IE AEHFGLAQLHQLRGRVGRG   SSC+LLY PPL
Sbjct: 537 ETRLLVATTVIEVGVDVPNASIMVIEGAEHFGLAQLHQLRGRVGRGSTASSCLLLYAPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + +  RL +++ TEDGF I+E D++ R  G+++G  QSG+P+F IA  E    L+ +A+
Sbjct: 597 GETATKRLKLMRETEDGFRISEADMEMRGAGDLIGTAQSGLPRFRIADLERQAGLMAMAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L +DP L S RG+++R+LL+L   +EA + I  G
Sbjct: 657 SDARALLAKDPKLDSPRGEAVRMLLWLTGQDEAIRLISVG 696


>gi|254461597|ref|ZP_05075013.1| ATP-dependent DNA helicase RecG [Rhodobacterales bacterium
           HTCC2083]
 gi|206678186|gb|EDZ42673.1| ATP-dependent DNA helicase RecG [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 696

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 286/700 (40%), Positives = 423/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L++  GVG K +       N G     +  DLLF  P S IDR  +  +
Sbjct: 4   RPEVLFPLFAALTSLEGVGPKTAQ------NMGGLGVEKPRDLLFLLPFSGIDRTLKETV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                   +T+   + QH   + +    Y+I + D      L+FF+ + + L  +   G+
Sbjct: 58  QGADLPATLTVEVEVGQHRPPRNKGG-AYRIDVIDSQIAFQLVFFHARGDYLSKLLPTGQ 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP +          P  E VY L  G++     K I  AL R
Sbjct: 117 RRVVSGKVELFDGLAQMVHPDHTVRVEDAEQIPSFEPVYPLTAGVTQKPLSKSIASALER 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P L EWI+      K +P    A   +H P+   D   T PARERLAYDE +A Q+ L 
Sbjct: 177 VPQLDEWIDSTQKDLKKWPDWQAAIKTVHAPKSIGDLAQTVPARERLAYDEFMAHQLTLG 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G+  +  G +  ++L  +P+ PT +Q  AI +I  D++   RM R+LQGD
Sbjct: 237 LARANRRRAPGVESHGSGTLRNQVLSGLPYKPTGAQLRAIDEITADLASPQRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A+ A VEAGGQ V+MAP  ILA+QH E ++   ++  +++E++TG    
Sbjct: 297 VGSGKTLVAFMALLAVVEAGGQGVMMAPTEILARQHLEGLQPLAESAGVVLELLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R   L  +   +  I++GTHA+FQ  +++  L L IVDEQHRFGV+QRL+L +K    
Sbjct: 357 REREAKLSALKEKKIQILVGTHAVFQKDVEFSDLRLAIVDEQHRFGVRQRLELGRKGENA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKPAGR+PIKT +I   R++EV+  L+  ++E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPAGRQPIKTALISDERVNEVVSHLRGAINE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP + E + S+  +  ERF +L       +  ++HG+M   +K++ M  F  G
Sbjct: 477 GRQAYWVCPLVGESEVSDLIAAEERFKTLRALLGDDVVRLVHGQMPPSEKDAAMADFVAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +A+I++IE AE FGLAQLHQLRGRVGRG   S+C+L+Y  PL
Sbjct: 537 RVQVLVATTVIEVGVNVPNATIMVIERAESFGLAQLHQLRGRVGRGSAASTCLLMYKAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RL+VL+ TEDGF I+E DL+ R  G+++G  QSG+P+F +A  E   +L+++A+
Sbjct: 597 SENGQKRLTVLRETEDGFQISETDLQMRGAGDLIGTAQSGLPRFRVADLESQTALMDVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP LTS RG++ R+LL+L + ++A + I  G
Sbjct: 657 SDARKLLHDDPKLTSARGKAARVLLWLMEQDQAIRLISVG 696


>gi|254437315|ref|ZP_05050809.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
 gi|198252761|gb|EDY77075.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
          Length = 703

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 287/700 (41%), Positives = 426/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLF  L +  G+G K +  L        A+  +  DLLF  P S +DR  R  I
Sbjct: 11  RPEVLWPLFGGLESLDGIGPKSAQAL------IAAHIEKPRDLLFTLPHSGVDRRRRESI 64

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            ++    + T+   I QH +    + RPY++++ D      L+FF    E L+     G+
Sbjct: 65  LDVQAPAVCTVEVTIGQH-TVPSSRGRPYRVMVEDQLTTFQLVFFRSHGEYLRKQLPTGQ 123

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GKI+       MVHP +I    +    PL E VY L   ++     K   + L +
Sbjct: 124 RRVVSGKIELFDGIGQMVHPDHILTPDEAEQIPLFEPVYPLTGTITQKAMFKATTDLLGQ 183

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P L EWI+  L  ++ +P    A    H P  + +   TS AR+RLAYDE+LA Q+ L 
Sbjct: 184 APDLVEWIDPALRAREGWPGWGAALAQAHRPLSSAELSPTSAARQRLAYDEVLAHQLTLA 243

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R Q ++  G     +G    K+L  + F PT +Q  A  +I +DM++ +RM R+LQGD
Sbjct: 244 LARAQARRSKGRMTVGDGAKQAKVLAALGFFPTGAQVRATAEIAEDMAKPHRMNRLLQGD 303

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVAL+A+  AVEAGGQ V+MAP  ILA+QH E ++   +   +++E++TG    
Sbjct: 304 VGSGKTLVALMALLTAVEAGGQGVMMAPTEILARQHLEGLRPLAEGAGVVLELLTGRDKG 363

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR  L  +A G  HI++GTHA+FQ+ + +  L L I+DEQHRFGV QR++L  K T+ 
Sbjct: 364 GERRAKLAALAAGDIHILVGTHAVFQNDVVFADLRLAIIDEQHRFGVAQRMELGAKGTSV 423

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GR P+ T ++  +++D+VI+RL+  +++
Sbjct: 424 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRSPVTTALVATSKMDQVIDRLRAAVAQ 483

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE + S+  +  +RF  L        + ++HG+M   +K++ M  F +G
Sbjct: 484 GRQCYWVCPLVEESEVSDMTAAEDRFKRLRAVLGEDVVGLVHGQMPPANKDAAMRGFVSG 543

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+L+Y  PL
Sbjct: 544 KTKVLVATTVIEVGVNVPNASIMVIERAESFGLAQLHQLRGRVGRGSTKSTCLLMYQAPL 603

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL +++ TEDGF I+EEDL  R  G+++G +QSG+P+F IA  E   +L+ +A+
Sbjct: 604 SEGGRQRLEIMRETEDGFRISEEDLAMRGAGDVIGTEQSGLPRFRIADLEHQTALMALAQ 663

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L S RG++ R LL+L + ++A + I  G
Sbjct: 664 TDARKLLLDDPKLESGRGKAARTLLWLMEQDKAIRLISVG 703


>gi|217978366|ref|YP_002362513.1| ATP-dependent DNA helicase RecG [Methylocella silvestris BL2]
 gi|217503742|gb|ACK51151.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
          Length = 690

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 314/702 (44%), Positives = 444/702 (63%), Gaps = 14/702 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPS LNPLFA  ++  GVG K    L ++       E R +DLLF+ P+  +DR  R K
Sbjct: 1   MRPSILNPLFASAASLPGVGPKTGKLLDRLFGV---GEARVLDLLFHLPAGVVDRRTRAK 57

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+E   + IV I   + +H     + + P ++L+ D TG+I L+FF      ++     G
Sbjct: 58  IAEAPLDAIVVIEVMVVEHR--PARGKGPTRVLVEDETGDILLVFFLTNHNWIERSLPVG 115

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            K  V+GK++       MVHP  +           +E VY L  GLS  L  K +  AL+
Sbjct: 116 AKRWVSGKLEIWDGHRQMVHPDRVLDAEGLAKMAPVEPVYPLTDGLSQRLLAKAVDGALA 175

Query: 181 RLPVLPEW--IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           RLP LP+W  +   L       +  +A    H P+  +D    + AR++LA DE+LAGQ+
Sbjct: 176 RLPALPDWGGMPAQL-------NFVQALAAAHRPQTPEDILPEAAARKKLASDEMLAGQL 228

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LMR + ++  G     +G+IAQKI   +PFS T+ QE A+ +I  D+S ++RMLR+L
Sbjct: 229 ALGLMRARERRMPGRASAGDGRIAQKIRAALPFSLTRGQEQALAEIRADLSSESRMLRLL 288

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVAL+AMA+ VEAG QA +MAP  ILA+QH+  ++++ +   + + ++TG 
Sbjct: 289 QGDVGSGKTLVALLAMASCVEAGRQAALMAPTEILARQHFASLQRFAEPGGLRLALLTGR 348

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R K L  +A G+  I+IGTHALFQ  + +  L L +VDEQHRFGV+QRL L  K 
Sbjct: 349 DKGVSRDKTLRALASGEIDILIGTHALFQQGVDFRDLALAVVDEQHRFGVRQRLALGDKG 408

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               +L MTATPIPR+LVLT  GD++IS I EKP GR+PI+T  +P  R+ E+IERL   
Sbjct: 409 ERTDILAMTATPIPRSLVLTYFGDMEISTIREKPVGRQPIETRALPTERLGELIERLSAA 468

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L+ G +AYW+CP +EE +  +  +  ERF  L + F  ++ +IHG+M   DK++ M++F 
Sbjct: 469 LAAGAQAYWVCPLVEESEALDVAAAQERFEDLQKFFGPAVGLIHGKMKGKDKDAAMEAFL 528

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            GT K+L+ATTVIEVG+D   ASII+IE+AE FGLAQLHQLRGRVGRG   S+CILLY  
Sbjct: 529 AGTTKILVATTVIEVGVDAPQASIIVIEHAERFGLAQLHQLRGRVGRGSAKSACILLYKG 588

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + +  R+ +L+ +EDGF IAEEDL+ R EGE+LG KQSG+P F +A P  H  LL  
Sbjct: 589 PLGETAKARIEILRESEDGFRIAEEDLRLRGEGEVLGQKQSGLPGFRLADPAAHADLLVE 648

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR++A+ I+ ++P L   +G+++R+LL +++  EA + + AG
Sbjct: 649 ARREAQRIVAENPKLEGEKGEALRLLLNIFERAEAIRLLGAG 690


>gi|170748080|ref|YP_001754340.1| ATP-dependent DNA helicase RecG [Methylobacterium radiotolerans JCM
           2831]
 gi|170654602|gb|ACB23657.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 750

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 310/708 (43%), Positives = 447/708 (63%), Gaps = 11/708 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           +RPS L+PLFAP     G+G K +  + +++      E R +DLLF+ P   + R     
Sbjct: 46  LRPSILDPLFAPARALPGIGPKMAPLIERLLGTPER-EARVVDLLFHLPQGGVARKLMGS 104

Query: 61  ISEISEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           ISE      VTI   +  H   Q+   RRP+++L+ D +G+I+L+FF      ++ +   
Sbjct: 105 ISEAPTGEPVTIGVTVVAHRPAQVGAGRRPHRVLVEDASGDISLVFFGMPRARVEKMLPL 164

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    +TG+I        MVHP  I   +     P +E VY    GL+     K+ V AL
Sbjct: 165 GAHRYITGRIDLWDGTRQMVHPSRIVDEAGLAELPAVEPVYGATEGLTSRAINKLAVVAL 224

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-------WTSPARERLAYDE 232
            RLP+LPEW +   L++   P+ A+A  + H P +A             +P+R+RLAYDE
Sbjct: 225 DRLPILPEWQDPAWLERNRLPAFADALRLEHRPEEAPPKAEDPLQPPPATPSRKRLAYDE 284

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA Q+AL L+R + +++ G     +G ++ ++   +PF+ T +Q  A+ +I  D++   
Sbjct: 285 LLASQLALALLRARQRRKAGRVNAGDGALSARLQAALPFALTGAQARAVAEIRADLAAPR 344

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           RMLR+LQGDVGSGKT VAL+AMA+AVEAG QA +MAP  ILA+QH+E +K      ++  
Sbjct: 345 RMLRLLQGDVGSGKTAVALLAMASAVEAGRQAALMAPTEILARQHFERLKPLAGPLRLR- 403

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG    A R+  L  +A G+  I++GTHALFQ+++ +  L L +VDEQHRFGV QRL
Sbjct: 404 -LMTGRDRAAERKSTLADLAAGEIDILVGTHALFQEAVAFRDLGLAVVDEQHRFGVHQRL 462

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L  K  A   L+MTATPIPRTL LT  GD+D+S + EKPAGR+PI+T+ +P  RIDEV+
Sbjct: 463 ALGAKGEAVDFLVMTATPIPRTLALTFFGDMDVSILDEKPAGRQPIRTITLPTERIDEVV 522

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
             L   ++ G++ YWICP +EE +  +  +  ERF+ L +HF  ++ +IHG+M   +K++
Sbjct: 523 AGLARAIAGGERVYWICPLVEESEFVDLAAAAERFDDLRKHFGDAVGLIHGKMPGPEKDA 582

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M  F  G  KLL++TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC
Sbjct: 583 AMARFAAGETKLLVSTTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSC 642

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY  PL + S  RL +++ +EDGF IAE DLK R EGE+LG +QSG+  F +A+ E  
Sbjct: 643 LLLYRGPLGQVSRARLEMMRASEDGFRIAEADLKLRGEGEVLGTRQSGLAAFRLARLESD 702

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            +LLE AR DA+ I+ +DP L S RGQ++R+LLYL++   A + I AG
Sbjct: 703 AALLEAARDDARLIVERDPGLRSPRGQALRVLLYLFEREAAIRLIGAG 750


>gi|83953545|ref|ZP_00962266.1| ATP-dependent DNA helicase RecG [Sulfitobacter sp. NAS-14.1]
 gi|83841490|gb|EAP80659.1| ATP-dependent DNA helicase RecG [Sulfitobacter sp. NAS-14.1]
          Length = 696

 Score =  633 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 293/700 (41%), Positives = 436/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +   +++            DLLF  P S IDR  +P +
Sbjct: 4   RPEALFPLFAKLETLEGVGPKTAQNFAQL------GVMAPRDLLFTLPYSGIDRRLQPSV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            +      VT+   +  H +   +    Y+I + D      L+FF+ + +  K    EG 
Sbjct: 58  KDAILPATVTVAVTVGAHRAPANKGG-AYRIHVEDSATAFQLVFFHARGDYWKRQMPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+++       MVHP ++   ++  + P  E VY L +G++  L  K    ALSR
Sbjct: 117 RRVVSGRVELFDGIPQMVHPDFVVPEAEAGDIPTFEPVYPLTSGITQKLMYKATRAALSR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P + EWI+ +   ++++P   +A +  H P    D    +PAR RLAYDELLA Q+ L 
Sbjct: 177 VPEVGEWIDPNQKNQENWPDFPDALHQAHAPNDMADLSAAAPARARLAYDELLAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + +++ G     +G + Q++L  +P++PT +Q  AI +I +DM+   RM R+LQGD
Sbjct: 237 LARAKDRRKAGRKTLGDGHLQQRVLGALPYAPTGAQTRAIAEIAKDMASGARMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E ++   +   ++++++TG    
Sbjct: 297 VGAGKTLVAFMALLRAVEAGGQGVLMAPTEILARQHLEGLRPLAEQAGVVLDLLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR  L  +  G   I++GTHA+FQ  + +  L L +VDEQHRFGV+QRL+L +K  A 
Sbjct: 357 PERRAKLSALESGAIQILVGTHAVFQADVAFGDLRLAVVDEQHRFGVRQRLELGKKGQAV 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPI+T +I  +R++EV+ RL+  +SE
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTALIATDRMEEVVTRLRAAISE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE + S+  +   RF  L        + ++HG+M   DK++ M +F+ G
Sbjct: 477 GRQCYWVCPLVEESEVSDLIAAEARFKHLRAALGEGVVGLVHGQMPPADKDAAMRAFQQG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             KLL+ATTVIEVG+DV +ASII+IE AE FGLAQLHQLRGRVGRG+  S+C+L+Y  PL
Sbjct: 537 QTKLLVATTVIEVGVDVPNASIIVIERAESFGLAQLHQLRGRVGRGQAASTCLLMYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S++   RL VL+ +EDGF+IAE DLK R  G+++G  QSG+P+F +A  E    L+++A+
Sbjct: 597 SESGRQRLEVLRESEDGFVIAETDLKMRGTGDLIGTAQSGVPRFRVADLEKQAGLMQVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDL + RG++ R+LL+L + +EA + I  G
Sbjct: 657 SDARALLAVDPDLATPRGKAARLLLWLMRQDEAIRLISVG 696


>gi|221639034|ref|YP_002525296.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides KD131]
 gi|221159815|gb|ACM00795.1| ATP-dependent DNA helicase RecG [Rhodobacter sphaeroides KD131]
          Length = 695

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 293/700 (41%), Positives = 420/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +   + +        TR  DLLF  P S +DR  R  I
Sbjct: 3   RPEILFPLFADLETLEGVGPKSAKSFAGL------GVTRPKDLLFLLPHSAVDRSRRASI 56

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            ++      T+   +  H     +K  PY+I + D   E TL+FF+ + + L  +   G 
Sbjct: 57  RDVLPPVTATVEVTVGAHYP-SRRKGGPYRIAVRDAEAEFTLVFFHARGDYLMKLLPPGE 115

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+I+       MVHP ++    +    P  E VY L  GL+  L  K    AL R
Sbjct: 116 QRIVSGRIEVFDGMAQMVHPDHVLPPEEAAALPACEPVYPLTAGLTQKLVAKAASAALLR 175

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP   EWI+  L  ++ +P  A A    H P    +   T+ AR RLAYDEL A Q+ L 
Sbjct: 176 LPEPAEWIDPGLKAREGWPDWAAAVRAAHAPEAPAEVTPTAAARRRLAYDELFAHQLTLT 235

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G+     G + +++L ++ F+PT +Q  A+ +I  DM+   RM R+LQGD
Sbjct: 236 LARASRRRGRGVASVGTGALQRRVLESLSFAPTTAQTRAVAEIAADMAAPQRMNRLLQGD 295

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+A AVEAGGQ V+MAP  ILA+QH   +    +   I + ++TG    
Sbjct: 296 VGAGKTLVAFLALAIAVEAGGQGVMMAPTEILARQHLASLAPMAEAAGIRLALLTGRDKG 355

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R   L  +A G+  +++GTHA+FQ  + ++ L L IVDEQHRFGV QR++L  K  A 
Sbjct: 356 AERAVKLAALASGEIGVLVGTHAVFQKDVIFHDLRLAIVDEQHRFGVAQRMELGAKGAAA 415

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L S GD+D+S + EKP GR P+KT ++   RIDEV+  L   ++E
Sbjct: 416 DVLVMTATPIPRSLALASYGDMDVSVLDEKPPGRTPVKTALVSCERIDEVVASLAHAVAE 475

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +E+ +  ++ S   RF  L       ++ ++HG+M   +K++ M  F  G
Sbjct: 476 GRQAYWVCPLVEDSEAVDYASAEARFQHLRAALGEGTVGLVHGQMPPAEKDAAMARFVAG 535

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+LLY  PL
Sbjct: 536 ETRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLLYQAPL 595

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++N   RL++L+ TEDGF IAEEDL  R  G+++G  QSG+P+F IA  E   +L+E+A+
Sbjct: 596 AENGQRRLTILRETEDGFRIAEEDLAIRGAGDLIGTAQSGLPRFRIADLERQSALMEVAQ 655

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L S RG++ R+LL+L   + A + +  G
Sbjct: 656 SDARKLLHDDPTLASPRGEAARLLLWLLDQDRAIRLLSVG 695


>gi|126729670|ref|ZP_01745483.1| ATP-dependent DNA helicase RecG [Sagittula stellata E-37]
 gi|126709789|gb|EBA08842.1| ATP-dependent DNA helicase RecG [Sagittula stellata E-37]
          Length = 696

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 290/700 (41%), Positives = 430/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L    G+G K +  L+       A      DLL+  P S  DR  R  +
Sbjct: 4   RPEPLWPLFADLKGLDGIGPKTAQTLA------GAGVEAPRDLLYTLPYSVTDRRARDTV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                   +T+   I +H   + +    Y+I ++D      L+FF   +E  + +F  G+
Sbjct: 58  QGADLPATLTVEVLIGRHWPPRTRGG-AYRIEVDDAKVRFQLVFFRGNSEYQQKLFPTGQ 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+++       MVHP ++    +  + P  E VY L   ++  L  + I + L+R
Sbjct: 117 RRLVSGRVELFDGVPQMVHPDHVLPVDEADSLPSFEPVYHLTGNVTQKLMVRAIADGLTR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P L EWI+   ++K+ +P  AEA   +H P   +D   T+PAR RLAYDEL+A Q+ L 
Sbjct: 177 VPDLEEWIDAAQMKKEGWPGWAEALARVHAPDGPEDMSPTAPARARLAYDELMAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   +K  GI    +G++  ++L  +P+ PT +Q  AI +IL DM+   RM R+LQGD
Sbjct: 237 LARAARRKRRGIETKGDGRLQARVLAALPYQPTGAQTRAIGEILADMAHPERMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVAL+A+  AVEAGGQ V+MAP  ILA+QH + ++   ++  +++EI+TG    
Sbjct: 297 VGAGKTLVALMALLNAVEAGGQGVMMAPTEILARQHLDSLRPLAESAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R   L  +A G   I++GTHA+FQ  + +  L L IVDEQHRFGV+QRL+L +K    
Sbjct: 357 AERAAKLAALAQGDIQILVGTHAVFQADVVFADLRLAIVDEQHRFGVRQRLELGKKGAGA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L+  GD+D+S + EKP GR P+KT ++   ++ EV++ L+  ++E
Sbjct: 417 DVLVMTATPIPRSLALSQYGDMDVSILDEKPPGRTPVKTALLSTEKMAEVVDHLRKAVAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE + S+  +   RF  L        + ++HG+M   +K++ M  F +G
Sbjct: 477 GRQAYWVCPLVEESESSDLIAAEARFQRLRAALGEGVVGLVHGQMPPAEKDAAMARFVSG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG++V +ASI++IE AE FG+AQLHQLRGRVGRG   S+C+L+Y PPL
Sbjct: 537 ETSVLVATTVIEVGVNVPNASIMVIERAEIFGIAQLHQLRGRVGRGTAASTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL+ L+ TEDGF IAE DL+ R  G+++G  QSG+PKF +A  E   +L+E+A+
Sbjct: 597 SETGMKRLTTLRETEDGFRIAEVDLEMRGAGDLIGTAQSGLPKFRVADLERQAALMEVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L S RGQ+ R LL+L + +EA + I  G
Sbjct: 657 SDARRLLADDPTLESPRGQAARSLLWLMRQDEAIRLIEVG 696


>gi|126726436|ref|ZP_01742277.1| ATP-dependent DNA helicase RecG [Rhodobacterales bacterium
           HTCC2150]
 gi|126704299|gb|EBA03391.1| ATP-dependent DNA helicase RecG [Rhodobacterales bacterium
           HTCC2150]
          Length = 696

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 292/702 (41%), Positives = 434/702 (61%), Gaps = 12/702 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  G+G K +     +      + T+  DLLF  P + IDR  R  I
Sbjct: 4   RPPVLFPLFAALETLDGIGPKTAKNFEGL------DVTKPRDLLFTLPYAGIDRRKRATI 57

Query: 62  --SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
             +++     V +      H +    K RPY++ + D T E  L+FF+ + + ++ +   
Sbjct: 58  KGADLPGVVTVEVE---VGHHNPPSHKSRPYRVTVMDETTEFQLVFFHARGDYVQKLLPT 114

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G++  V+G+++       MVHP ++   +   + P+ E +Y L  G++  +  K I   +
Sbjct: 115 GQRRVVSGRVELFDGIAQMVHPDHVLSPNAANSIPVFEPIYPLTHGVTQKMITKAIKGVM 174

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            RLP++ EWI+     +  +P    A    H+P    DF   +P R RLAYDE+ A QI 
Sbjct: 175 QRLPMVEEWIDPSQKAQAEWPDWNLAITKAHHPENMGDFGANTPERLRLAYDEMFAHQIT 234

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L R +   + G      GK+  K+L  +P++PT +Q   IK+I  D++   RM R+LQ
Sbjct: 235 LALARARNSAKPGRISKSTGKLQNKVLAALPYNPTSAQARTIKEIQADLNSNKRMNRLLQ 294

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKTLVAL+A+ A VEAGGQ V+MAP  ILA+QH + ++   ++  +++E++TG  
Sbjct: 295 GDVGAGKTLVALMALLAVVEAGGQGVMMAPTEILARQHLDGLRPLAESAGVVLELLTGRD 354

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   L  +A+G  HI++GTHA+FQ  +++  L L IVDEQHRFGV+QR+ L  K  
Sbjct: 355 KGRERAAKLAALANGDIHILVGTHAVFQKDVEFQDLRLAIVDEQHRFGVRQRMDLGAKGP 414

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +  VL+MTATPIPR+L L   GD+D+S + EKP GR PIKT ++  +R+D+V+  L+  +
Sbjct: 415 SADVLVMTATPIPRSLALAQFGDMDVSILDEKPPGRTPIKTAMVANSRLDQVVGNLQRAV 474

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           SEGK+AYW+CP ++E + S+  +  ERF  L       ++ ++HG+M   +K++ M  F 
Sbjct: 475 SEGKQAYWVCPLVDESEVSDLTAAEERFKRLRAVMPDGTVGLVHGQMPPAEKDAAMARFI 534

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G  K+L+ATTVIEVG+DV +A+I++IE AE FGLAQLHQLRGRVGRG   S+C+LLY P
Sbjct: 535 SGETKILVATTVIEVGVDVPNATIMVIERAESFGLAQLHQLRGRVGRGAAASTCVLLYAP 594

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL VL++TEDGF IAEEDL  R  G+++G  QSG+PKF IA  E   SL++I
Sbjct: 595 PLSEGGERRLRVLRDTEDGFKIAEEDLAMRGAGDLIGTAQSGLPKFRIADLENQASLMQI 654

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A+ DA+ +L  DP L + RG++ R+LL+L + ++A + I  G
Sbjct: 655 AQSDARKLLHDDPILETPRGKAARVLLWLMEQDQAIRLISVG 696


>gi|146340717|ref|YP_001205765.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Bradyrhizobium sp. ORS278]
 gi|146193523|emb|CAL77539.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Bradyrhizobium sp. ORS278]
          Length = 700

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 318/703 (45%), Positives = 447/703 (63%), Gaps = 6/703 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLFAP++T  GVG K    L  +++C  +   R +DLL + P+S IDR  RPK
Sbjct: 1   MRPAILNPLFAPVTTLSGVGPKQDKLLRYLLSC--SETPRLVDLLLHLPASVIDRRNRPK 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           + ++    +VT+   + +H       R PY +  +D TG++ L FF  K + ++ +   G
Sbjct: 59  VRDVEVGTVVTLEVTVDRHRP-SRNARAPYLVYASDDTGDVVLTFFRPKGDYIEKMLPVG 117

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            K  V+G ++       +VHP  I   +       I+ VY L  GL++   ++ I  AL+
Sbjct: 118 AKRYVSGTVQMYDGIPQIVHPDRILDEAGFAKLSGIDPVYPLTEGLALGSLRRAIAAALT 177

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           +LP LPEWI  ++L + +FPS+ EA   +H P++  D    +P   RLA+DELLAGQ+AL
Sbjct: 178 KLPELPEWISPEVLSRCNFPSLREALTRVHVPQELTDILPENPFWSRLAFDELLAGQLAL 237

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R Q ++  G     +G++ ++I+  +P++ T SQ  AI+ I  D+ +  RMLR+LQG
Sbjct: 238 ALVRAQLRRPAGNRHAGDGRLRRRIIDALPYALTNSQAQAIEAIAADLEKPVRMLRLLQG 297

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+A AA  EAG QA +MAP  ILA+QH + I    +   + V I+TG   
Sbjct: 298 DVGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHAKTIAPLAERAGMSVAILTGREK 357

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR  L R+  G+  ++IGTHAL QD + +  L L IVDEQHRFGV++RL LT K  A
Sbjct: 358 VKERRDILARLEAGEIDVLIGTHALIQDDVMFKSLALAIVDEQHRFGVRERLALTSKGEA 417

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+++ATPIPRTLVLT  GD+DIS++ EKPAGR+PI T  +   R  EVI+ +   L 
Sbjct: 418 VDVLVLSATPIPRTLVLTYFGDMDISELREKPAGRQPIDTRAVADTRRTEVIDAVGRALD 477

Query: 481 EGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            GK  YWICP +EE +     +  +  +R+ SL E F   + ++HG+M   +K+ VM+ F
Sbjct: 478 AGKLVYWICPLVEESEAEGIDHLTNATDRYESLRERFGERVGLVHGKMKGSEKDDVMNRF 537

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTV+EVG+DV  ASI++IENAE FGLAQLHQLRGR+GRG E S+CILLYH
Sbjct: 538 AAHELRLLVATTVVEVGVDVPAASIMVIENAERFGLAQLHQLRGRIGRGSEASTCILLYH 597

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PL + S  RL+V++ T DGF IAEEDLK R EG++LGI+QSG+P + IA+PE+H  L+ 
Sbjct: 598 EPLGQMSKARLAVIRETTDGFRIAEEDLKLRGEGDVLGIRQSGLPGYRIARPEVHAQLIT 657

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            AR +A  IL  DP L   R  ++R LLYLY+ +EA   + AG
Sbjct: 658 QARDEALRILKDDPKLKGPRSDALRCLLYLYERDEAIPLLTAG 700


>gi|114570037|ref|YP_756717.1| ATP-dependent DNA helicase RecG [Maricaulis maris MCS10]
 gi|114340499|gb|ABI65779.1| ATP-dependent DNA helicase RecG [Maricaulis maris MCS10]
          Length = 694

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 287/701 (40%), Positives = 425/701 (60%), Gaps = 8/701 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLF  ++   G+G + +  + K+         R  D+LF  P   +DR  R  
Sbjct: 1   MRPEILFPLFQDVTKLPGIGPRLATLVEKVCGG------RIRDVLFTPPVGLVDRTRRVT 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I++     IVT+T  +  H   Q Q  +PYK+ L D TG + L+FF+ + + L  +  EG
Sbjct: 55  ITDAPTGEIVTLTATVETHIPAQRQG-QPYKVRLRDETGFLHLIFFHARRDYLTKLLPEG 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               ++GK ++  + I +VHP  +    +     L+E VY L  GL+  + +K +  +L+
Sbjct: 114 ETRVISGKAERFGSEIQIVHPDLVITEDEASEMALVEPVYPLTAGLTAKVMRKAVAGSLT 173

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            +P LPEWI  DL     +PS   A   IH P+ A   +  +P R+RLA+DE+ A Q+AL
Sbjct: 174 FVPELPEWIPGDLRGSHGWPSFKPALKAIHAPQNASGLDAGAPERQRLAFDEIFARQLAL 233

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++R   + + G P+    +  + +L   PF PT +Q  A ++I  DM    RM R+L G
Sbjct: 234 QIVRAHRRAQSGRPLAGSDEAVRVVLDAAPFKPTGAQIRAFEEIRTDMQSDARMTRLLHG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG+GKT VA +A A A  AG Q  IMAP  ILA+QH + + +  +   + V  +TG   
Sbjct: 294 DVGAGKTFVAALAAAHAAGAGVQTAIMAPTEILARQHEKTLSQMLEPAGLSVIALTGRDK 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R   LER+A+G+  I+ GTHALFQD I++  L LV++DEQHRFGV  R++LT K   
Sbjct: 354 GKARAALLERMANGKVDIVCGTHALFQDGIEFADLGLVVIDEQHRFGVSDRMRLTSKGQR 413

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P  L+MTATPIPRTL L   GD+D+S++ EKPAGR P  T ++ + R+DEV+E ++  + 
Sbjct: 414 PDTLVMTATPIPRTLSLAVYGDLDVSRLDEKPAGRIPPDTRLVSMERLDEVVEGVRRAIG 473

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKN 539
            G + YW+CP +EE + S   +  +R+  L        + ++HGRM   +KE +   F+ 
Sbjct: 474 RGDRVYWVCPLVEESEMSELSAAEDRWRHLRAVLGDDRVGLLHGRMKPAEKEDIATRFRA 533

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+ATTVIEVG+D  DA+++IIE+AE FGLAQLHQLRGRVGRG++ SSC+LLY  P
Sbjct: 534 GEMDVLVATTVIEVGVDAPDATVMIIEHAERFGLAQLHQLRGRVGRGDKPSSCLLLYKAP 593

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + +  RL +++ T+DGFLIAEED + R  G+ LG++QSG+P+F +A  E H  L+E+A
Sbjct: 594 LGETARARLEMMRETDDGFLIAEEDWRLRGAGDPLGLRQSGLPQFRLADLEQHSELIELA 653

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
              A+ I+ QDPDL    G ++R LLYL+ +++  +F+R+G
Sbjct: 654 NDHARLIVHQDPDLKGDSGDALRTLLYLFDHDQGVRFLRSG 694


>gi|154248335|ref|YP_001419293.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154162420|gb|ABS69636.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 697

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 296/700 (42%), Positives = 422/700 (60%), Gaps = 3/700 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFAPL++  G+G K      +++        R +DLLF+ PS F+DR  RP 
Sbjct: 1   MRPDALLPLFAPLTSLPGIGPKLVRPYGRLLG---REMPRVLDLLFHMPSGFVDRRARPT 57

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+E   E  VT+   +  H S     R P++  ++D +G++ ++ F      L+++   G
Sbjct: 58  IAEALPETDVTLEVRVDGHQSPPPGSRAPHRTFVSDASGDMVVVHFKMDPARLEHMLPVG 117

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           +   + G+I        M HP  +   +     P +E VY L  GL+    ++ I  AL 
Sbjct: 118 QTRWLCGRISLYDGMRQMTHPDRVLDAAGLARLPAVEQVYPLVEGLAAGHVRRAIEAALQ 177

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           R+P LPEWI +DLL ++ +P+  EA   +H P    +         RLA+DEL A QI L
Sbjct: 178 RVPELPEWIPQDLLAERGWPAFREALVRVHRPANPHEATPAGGPWRRLAFDELFAHQITL 237

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R Q +K  G     +G I+ ++L  +PF  T  QE A++ I  D++   RMLR+LQG
Sbjct: 238 ALLRAQEEKAGGRSTVGDGHISAQLLSALPFRLTAGQEQAVEAIRADLAADTRMLRLLQG 297

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+A A   EAG Q  +MAP  ILA+QH+E I        + V ++TG   
Sbjct: 298 DVGSGKTVVALMAAATVAEAGRQTALMAPTEILARQHHETIAPLADAAGLSVSVLTGREK 357

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R   L  + HG+  ++IGTHAL QD + +  L LV+VDEQHRFGV+QRL L +K  A
Sbjct: 358 GRARTAVLTELQHGRTDMVIGTHALIQDDVIFRDLALVVVDEQHRFGVEQRLTLARKGEA 417

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L+MTATPIPRTLVLT  GD+D S++ EKP GR+ I T  IP++R+DEV+      LS
Sbjct: 418 VDMLVMTATPIPRTLVLTLFGDMDSSELREKPPGRQAIDTRAIPLDRLDEVVAAAGRALS 477

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G +AYWICP +EE   S+  +  ERF  L   F   + ++HGRMS   K+  M  F +G
Sbjct: 478 SGARAYWICPLVEETDTSDLAAATERFEVLKSIFGDKVGLVHGRMSGAAKDEAMARFASG 537

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LL+ATTVIEVG++V +A++++IE+AE FGLAQLHQLRGRVGRG++ S C+LLY  PL
Sbjct: 538 ETRLLVATTVIEVGVNVPEATVMVIEHAERFGLAQLHQLRGRVGRGDKPSVCLLLYRAPL 597

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + +  RL++L+ ++DGF +AEEDL+ R EG++LG +QSGMP F  A+ E H   +E AR
Sbjct: 598 GETAKARLAILRESQDGFRLAEEDLRLRGEGDVLGTRQSGMPGFRTARLEFHSGEVEAAR 657

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             A   +  DPDL + +   +  LL+L + + A + + AG
Sbjct: 658 DAAAQRVKADPDLAAPQSGPLHTLLHLAERDAAMRLLSAG 697


>gi|182678303|ref|YP_001832449.1| ATP-dependent DNA helicase RecG [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182634186|gb|ACB94960.1| ATP-dependent DNA helicase RecG [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 731

 Score =  630 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 312/705 (44%), Positives = 451/705 (63%), Gaps = 5/705 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCG-NANETRFIDLLFYHPSSFIDRHYRP 59
           MRPS L+PLFA   + +GVG K +L L K +    N+   R IDLLF+ PS  IDR  RP
Sbjct: 27  MRPSLLDPLFASAESLQGVGPKTALLLGKAVGIAANSGGARVIDLLFHLPSGTIDRRERP 86

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           KI+E   +R+VT+   + +H     + + PY++L+ D TG++ L+FF    + ++     
Sbjct: 87  KIAEAPLDRVVTLEVTVVEHRPPPARSKAPYRVLVEDETGDVLLVFFLANPQWIERSLPR 146

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V+GK++       MVHP  +       N P +E +Y    GLS     K I  A 
Sbjct: 147 GEKRWVSGKLELWDGYRQMVHPDRVLDAQGLANLPPVEPIYPTTEGLSQKQIAKAIEAAF 206

Query: 180 SRL----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           +      P LPEW +  L++   FPS ++A   +H+P +       SP R RLA DELLA
Sbjct: 207 AYFTARGPKLPEWHDLSLVKLPVFPSFSDALKALHHPAEPNAIGLESPGRLRLALDELLA 266

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q+AL LMR + ++  G     +G++  KIL  +P+ PT  QE A+ +I  D++   RML
Sbjct: 267 SQLALALMRGKRRRMAGRIAQGDGRLTAKILAGLPYRPTPCQEKALAEIKADLAAPRRML 326

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL+AMA  VEAG QA +MAP  ILA+QHY  +    +NT + + ++
Sbjct: 327 RLLQGDVGSGKTLVALLAMAGMVEAGRQAALMAPTEILARQHYANLSALCENTGLRLALL 386

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG      R K L  +A G+  I+IGTHALFQ+ + ++ L L +VDEQHRFGV QRL L+
Sbjct: 387 TGRDKGTSRAKRLAALAAGEIDILIGTHALFQEDVTFHDLGLAVVDEQHRFGVHQRLALS 446

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K  A  +L+MTATPIPRTLVLT  GD+++S + EKP GR+ I T  +PI RIDEV++ L
Sbjct: 447 DKGEAVDILVMTATPIPRTLVLTFFGDMEVSVLREKPPGRQKIDTRALPIERIDEVVDGL 506

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +L++G +AYW+CP +EE +  +  +V  RF  L   F + + ++HG+M   +K++ M 
Sbjct: 507 HRLLAKGGRAYWVCPLVEESELLDVAAVEARFEDLTSIFGTKVGLLHGKMKAAEKDAAMA 566

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +F +G  ++L+ATTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG   SSC+LL
Sbjct: 567 AFASGETRILVATTVIEVGVDVPEATVMVIEHAERFGLAQLHQLRGRVGRGPGQSSCLLL 626

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PL + +  R+++++ +EDGF IAEEDL+ R EG++LG KQSG+P F IA   +H  L
Sbjct: 627 YKGPLGEIAKARIAIMRESEDGFRIAEEDLRLRGEGDVLGTKQSGLPGFRIADLSVHAQL 686

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           L +AR +A+ ++  +P L   +G+++R+LL L++  EA + + AG
Sbjct: 687 LTLARAEARQMVEDNPKLEGPQGEALRLLLNLFERREAIRLLDAG 731


>gi|163741159|ref|ZP_02148551.1| ATP-dependent DNA helicase RecG [Phaeobacter gallaeciensis 2.10]
 gi|161385512|gb|EDQ09889.1| ATP-dependent DNA helicase RecG [Phaeobacter gallaeciensis 2.10]
          Length = 696

 Score =  630 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 291/700 (41%), Positives = 422/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T +G+G K +   ++I      +     DLL+  P S +DR  R  I
Sbjct: 4   RPEILFPLFAGLETLQGIGPKTAQHFAQI------DIETPRDLLYSLPYSIVDRRRRDSI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +    + T+   I  H   + +    Y+I ++D   E  L+FF+ ++  L+    EG 
Sbjct: 58  RGLDYPTVATVEVTIGAHRPARNKGG-AYRIHVSDAEEEFQLVFFHGRSRYLEAQLPEGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++   ++  + P  E VY L  G+S     K    ALSR
Sbjct: 117 RRVVSGKLELFDGMAQMVHPDHMVPVAEAGDIPEFEPVYHLTHGVSQKTMFKAAQSALSR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EW +   ++K+ +P+  EA    H P         +P R RLAYDEL A Q+ L 
Sbjct: 177 LPELQEWADPSQIRKEDWPTWQEALVAAHTPDGMDALAAEAPGRTRLAYDELFAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + +   G      G +  ++L  +P+ PT +Q  AI +I  DM++  RM R+LQGD
Sbjct: 237 LARLRDRALPGRSSLANGTLQSRVLGALPYRPTGAQARAIDEITADMARDARMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E ++   +   +++EI+TG    
Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTEILARQHLEALRPLAETAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R      +A G   I++GTHA+FQ  + +  L L IVDEQHRFGV+QR++L +K    
Sbjct: 357 RERAAKCAALARGDIQILVGTHAVFQADVAFQDLRLAIVDEQHRFGVRQRMELAEKGKGA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L LT  GD+D+S + EKP GRKP+KT +I   R+ EV+  L+  + E
Sbjct: 417 DVLVMTATPIPRSLALTQYGDMDVSVLDEKPPGRKPVKTAVISTERMQEVVSHLRGAIDE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE +  +  +  ERF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVEESEVMDLTAAEERFKQLRAVLGEGVVGLVHGQMPAAEKDAAMAAFQAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRGE  S+C+LLY  PL
Sbjct: 537 ETKVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGEAASTCLLLYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           SK    RL +L+ TEDGF IAE DL+ R  G+++G  QSG+P+F IA  +    L+ +A+
Sbjct: 597 SKGGQKRLEILRETEDGFRIAETDLEMRGAGDVIGTAQSGLPRFRIADLDRQAGLMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDL+S RGQ+ R+LL+L + ++A + I  G
Sbjct: 657 SDARALLASDPDLSSPRGQAARVLLWLMKQDQAIRLISVG 696


>gi|27379714|ref|NP_771243.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110]
 gi|27352866|dbj|BAC49868.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 702

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 310/704 (44%), Positives = 437/704 (62%), Gaps = 6/704 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPS LNPLFAP+++  GVG K    L  +++       R +DLL + PS  IDR  RPK
Sbjct: 1   MRPSLLNPLFAPVTSLPGVGPKQDKLLQYLLSRNE--TPRLVDLLLHLPSQVIDRRARPK 58

Query: 61  ISEISEERIVTITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +  +  +VT+   +           R PY +  +D TG++ L FF  K   ++ +   
Sbjct: 59  IRDAVQGTMVTLEVTVDRHRPPPPRNARAPYLVYASDETGDVVLTFFRAKPGYVEKLLPV 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V+G ++       +VHP  +           I+ VY L  GL++   ++ I +AL
Sbjct: 119 GEKRYVSGTLQMYDGIPQIVHPDRVLDEEAISKLSGIDPVYPLTEGLALGSLRRAIAQAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            +LP LPEWI  +++++  FP IAEA   +H P +  D     P   RLA+DELLAGQ+A
Sbjct: 179 QKLPALPEWISPEVMRRCHFPPIAEALTRVHQPVELTDILPDRPFWSRLAFDELLAGQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  GI    +G +  KI+  +P++ T SQ  A   I  D+ Q  RMLR+LQ
Sbjct: 239 LALIRAQLRRPAGIRNAGDGHLRNKIIDALPYALTLSQRDAAAAIASDLQQPVRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  E G QA +MAP  ILA+QH + I    +   + V I+TG  
Sbjct: 299 GDVGSGKTVVALLAAAAVAEVGKQAALMAPTEILARQHIKTIAPLAERAGLRVAILTGRE 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+ + ++A G+  +++GTHAL QD + +  L L +VDEQHRFGV++RL LT K  
Sbjct: 359 KGKERREIIAQLAEGEIDLLVGTHALIQDDVIFRDLALAVVDEQHRFGVRERLALTSKGE 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  VL+++ATPIPRTLVLT  GD+DIS++ EKPAGR+PI+T  I ++R++EV + +   L
Sbjct: 419 AVDVLVLSATPIPRTLVLTYFGDMDISELREKPAGRQPIETRTISMSRLNEVTDSIGRAL 478

Query: 480 SEGKKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             GK  YWICP +EE +     +  +  +RF +L + F   + ++HG+M   +K+ VM  
Sbjct: 479 QAGKLVYWICPLVEESEAEGTEHLTNATKRFENLQKRFGDRVGLVHGQMKGTEKDRVMGQ 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F      LL+ATTV+EVG+DV  A+I++IENAE FGLAQLHQLRGR+GRG E S+C+LLY
Sbjct: 539 FAAHEIGLLVATTVVEVGVDVPAATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PL + S  RL V++ T DGF IAEEDLK R EG++LG++QSG+P + IA+ E+H  L+
Sbjct: 599 SEPLGEMSKARLKVIRETTDGFRIAEEDLKLRGEGDVLGVRQSGLPGYRIARSEVHGQLI 658

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             AR +A  IL  DP L   RG+++R LLYLY+ +EA   I AG
Sbjct: 659 TQARDEALRILKDDPKLKGERGEALRCLLYLYERDEAIPLIGAG 702


>gi|163736312|ref|ZP_02143731.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
 gi|161390182|gb|EDQ14532.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
          Length = 696

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 291/700 (41%), Positives = 422/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T +G+G K +   ++I      +     DLL+  P S +DR  R  I
Sbjct: 4   RPEILFPLFAGLETLQGIGPKTAQHFAQI------DIETPRDLLYSLPYSIVDRRRRDSI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +    + T+   I  H   + +    Y+I ++D   E  L+FF+ ++  L+    EG 
Sbjct: 58  RGLDYPTVATVEVTIGAHRPARNKGG-AYRIHVSDAEEEFQLVFFHGRSRYLEAQLPEGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++   ++  + P  E VY L  G+S     K    ALSR
Sbjct: 117 RRVVSGKLELFDGMAQMVHPDHMVPVAEAGDIPEFEPVYHLTHGVSQKTMFKAAQSALSR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EW +   ++K+ +P+  EA    H P         +P R RLAYDEL A Q+ L 
Sbjct: 177 LPELQEWADPSQVRKEDWPTWQEALVAAHTPDGMDALAAEAPGRTRLAYDELFAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + +   G      G +  ++L  +P+ PT +Q  AI +I  DM++  RM R+LQGD
Sbjct: 237 LARLRDRALPGRSSLANGTLQSRVLGALPYRPTGAQARAIDEITADMARDARMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E ++   +   +++EI+TG    
Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTEILARQHLEALRPLAETAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R      +A G   I++GTHA+FQ  + +  L L IVDEQHRFGV+QR++L +K    
Sbjct: 357 RERAAKCAALARGDIQILVGTHAVFQADVAFQDLRLAIVDEQHRFGVRQRMELAEKGKGA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L LT  GD+D+S + EKP GRKP+KT +I   R+ EV+  L+  + E
Sbjct: 417 DVLVMTATPIPRSLALTQYGDMDVSMLDEKPPGRKPVKTAVISTERMQEVVSHLRGAIDE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE +  +  +  ERF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVEESEVMDLTAAEERFKQLRAVLGEGVVGLVHGQMPAAEKDAAMAAFQAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRGE  S+C+LLY  PL
Sbjct: 537 ETKVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGEAASTCLLLYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           SK    RL +L+ TEDGF IAE DL+ R  G+++G  QSG+P+F IA  +    L+ +A+
Sbjct: 597 SKGGQKRLEILRETEDGFRIAETDLEMRGAGDVIGTAQSGLPRFRIADLDRQAGLMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDL+S RGQ+ R+LL+L + ++A + I  G
Sbjct: 657 SDARALLASDPDLSSPRGQAARVLLWLMKQDQAIRLISVG 696


>gi|99081238|ref|YP_613392.1| ATP-dependent DNA helicase RecG [Ruegeria sp. TM1040]
 gi|99037518|gb|ABF64130.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
          Length = 696

 Score =  628 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 294/700 (42%), Positives = 430/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T +GVG K +   +++      + T   DLLF  P S +DR  R  I
Sbjct: 4   RPEQLFPLFAELETLQGVGPKIAEHFAQL------HITAPRDLLFSLPYSVVDRRRRETI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +      T+   + +H   + +    Y+I + D   E  L+FF+ ++  L     EG 
Sbjct: 58  RGLDLPTTATVEVTVGRHRPARNRGG-AYRIDVTDQETEFQLVFFHGRSRYLTAQLPEGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++    +  + P  E VY L  G++     K +  AL+R
Sbjct: 117 RRVVSGKLELFDGMAQMVHPEHMLPLEEAGDIPDFEPVYHLTHGITQKTMYKAVQSALAR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P L EW++     K+ +P    A +  H P   +D    +PAR RLAYDEL A Q+ L 
Sbjct: 177 VPDLTEWMDPAQKTKQGWPDWHAAISAAHAPATLEDLGAQAPARARLAYDELFAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           + R   +   G      G + +K+L  +P+ PT +Q  AI++I  DM  + RM R+LQGD
Sbjct: 237 IARSVERDLPGRRSVATGTLQRKVLATLPYRPTGAQGRAIEEITADMGSERRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLV  +A+  AVEAGGQ V+MAP  ILA+QH E +K   ++  +++EI+TG    
Sbjct: 297 VGAGKTLVGFMALLVAVEAGGQGVMMAPTEILARQHLEGLKPLAEDAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR  LE +A G  HI++GTHA+FQ  + +  L LVIVDEQHRFGV+QR++L +K    
Sbjct: 357 KDRRAKLESLARGDIHILVGTHAVFQQDVVFDDLRLVIVDEQHRFGVRQRMELAEKGKRA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L LT  GD+++S + EKP GRKPIKT I+   R+ EV++ L+  + E
Sbjct: 417 DVLVMTATPIPRSLALTQYGDMEVSILDEKPPGRKPIKTAILSTERMSEVVDHLRRAIDE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP +EE +  +  +  ERF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVEESEVMDLTAADERFKHLRAVLGEEVVGLVHGQMPPAEKDAAMLAFQEG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRGE  S+C+L+Y PPL
Sbjct: 537 RTRVLVATTVIEVGVNVPNASIMVIERAEIFGLAQLHQLRGRVGRGEAQSTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    RL VL+ +EDGF+IAE DL+ R  G+++G  QSG+P+F IA  E    L+ IA+
Sbjct: 597 TEGGRKRLEVLRESEDGFVIAETDLQMRGAGDVIGTAQSGLPRFHIADLERQSDLMAIAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ ++T DPDL+S RG++ R LL+L + +EA + I  G
Sbjct: 657 SDARALMTSDPDLSSARGRAARTLLWLLRQDEAIRLISVG 696


>gi|312113594|ref|YP_004011190.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218723|gb|ADP70091.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 739

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 282/696 (40%), Positives = 431/696 (61%), Gaps = 4/696 (0%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L APL++ +G+G + +  L+K++        R IDLL++ P+  +DR   P +SE    
Sbjct: 45  ALQAPLTSLKGLGPRGAELLTKLLA-KPLTPPRVIDLLWHLPTGTLDRRLTPSVSEALPG 103

Query: 68  RIVTITGY-ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            IVT+    +   +  +   R P +I+  D +G + +++F+     +K +   G    V+
Sbjct: 104 GIVTLVVTPVKHSAPPRSAPRAPVRIVCEDESGALDIVYFHGDRAGIKRLLPLGEPRLVS 163

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           G++++   R+ M HP Y+   ++    P IE VY L  GL+     ++I +AL+R+P  P
Sbjct: 164 GRVERHGTRLQMTHPDYVLAPNERHRLPAIEPVYPLTLGLTQKFLYRVIGDALARVPEFP 223

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           EW++  L++ + +P   +A   +H P+   D      ARERLAYDE+ + Q+A+ L+R+ 
Sbjct: 224 EWLDASLVEAQGWPGFRDALVTLHRPQSHADLALWHKARERLAYDEVSSAQLAIALVRRS 283

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            ++  G  +  EG +A K+  ++PF+ T+SQE+A+ +I  DM+   RMLR+LQGDVG+GK
Sbjct: 284 HRQLAGRSLVGEGSLAAKMRASLPFALTRSQETALAEIKADMASSRRMLRLLQGDVGAGK 343

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA +AMA AVEAG Q  +MAP  +LA+QH E +    +   I +  ++G      R +
Sbjct: 344 TVVAALAMANAVEAGAQVALMAPTDVLARQHLETLTPLCEAAGIPLGYLSGREQGRTRGR 403

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL--TQKATAPHVL 424
            L ++A G+   I GTHALFQ  + +    L IVDEQHRFGV QRL L    +A    +L
Sbjct: 404 LLGKLASGEIRAICGTHALFQPDVVFRDFGLAIVDEQHRFGVAQRLALQEKARAGDADIL 463

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL L+  GD+D+S++TEKPAGRKP+ T  +P  R+++VIE L   L EG +
Sbjct: 464 VMTATPIPRTLQLSLHGDLDVSQLTEKPAGRKPVITRTVPQERLEDVIEGLHRALGEGAQ 523

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            YW+CP +E +   +  +V ER   L + F   + ++HG++   +K++ + +F      +
Sbjct: 524 VYWVCPAVESETARDMTAVTERAAHLRQVFGERVGLVHGKLPGAEKDAAIAAFIARETTI 583

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+ATTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG   SSCILLY  PLS+ +
Sbjct: 584 LVATTVIEVGVNVPNATVMIIENAEMFGLAQLHQLRGRVGRGAAQSSCILLYKGPLSETA 643

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            +RL +L+  +DGF+IAEEDL+ R  GE+LG KQSG P F IA       L+E A    +
Sbjct: 644 KSRLDILRQVDDGFVIAEEDLRLRGGGEVLGAKQSGDPGFRIAGWPEAAPLIERAATAVR 703

Query: 665 HILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ++L +DP L S +G + R  L L++ +EA + ++AG
Sbjct: 704 YLLGRDPYLKSDQGLAARTCLALFERDEAMRLLQAG 739


>gi|260433790|ref|ZP_05787761.1| ATP-dependent DNA helicase RecG [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417618|gb|EEX10877.1| ATP-dependent DNA helicase RecG [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 696

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 295/700 (42%), Positives = 435/700 (62%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +  L      G        DLLF  P + IDR  R  I
Sbjct: 4   RPEQLYPLFAGLETLDGVGPKTARLL------GQMGLETPRDLLFALPYAVIDRRRRDTI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
             +     +T+   +  H   + +    Y++ + D   +  L+FF+ + + LK +  EG 
Sbjct: 58  RGVDLPATLTVEVTVGAHRPPRNRGG-AYRVFVQDSQSDFQLVFFHARGDYLKKILPEGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  ++G+++       MVHP ++    Q  + P  E VY L  G++     K    AL+R
Sbjct: 117 RRVISGRLELFDGVAQMVHPDHMVPVDQAGSIPEFEPVYHLTQGVTQKTAYKAAQSALAR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +P L EW +  L+ ++ +P   EA    H+PR A D    +PARERLAYDEL A Q+ L 
Sbjct: 177 VPDLAEWADPALVDRRGWPGWPEAIRAAHSPRGADDVAPFAPARERLAYDELFAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R++ +K  GI     G +  K+L+N+P+ PT++Q+ AI++I  DM+   RM R+LQGD
Sbjct: 237 LARQRERKSRGIVSVGTGALQSKVLKNLPYQPTQAQQRAIREIAADMASDARMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E ++   ++  +++EI+TG    
Sbjct: 297 VGAGKTLVAFMALLIAVEAGGQGVMMAPTEILARQHLEGLRPLAEDAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A RR  L  +  G   I++GTHA+FQ  + +  L L IVDEQHRFGV+QR++L++K    
Sbjct: 357 AERRAKLAALKAGDIQILVGTHAVFQSDVAFKDLRLAIVDEQHRFGVRQRMELSRKGQGA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKP+KT I+   R+DEV++ L+  + +
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPVKTAIVSTQRMDEVVDHLRRAIDD 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++ YW+CP ++E + S+  +  ERF  L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQCYWVCPLVDESEVSDLTAAEERFKHLRAQLGEGVVGLVHGQMPPSEKDAAMAAFQAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +A+I++IE AE FGLAQLHQLRGRVGRGE  S+C+L+Y PPL
Sbjct: 537 RTKVLVATTVIEVGVNVPNATIMVIERAEIFGLAQLHQLRGRVGRGEGASTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL  L+ TEDGF IA+ DL+ R  G+++G  QSG+P+F IA  E    L+E+A+
Sbjct: 597 SEGGRRRLEALRETEDGFRIAQTDLEMRGAGDLIGTAQSGLPRFQIADLERQAGLMEVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP+L S RG++ R LL+L + ++A + I  G
Sbjct: 657 TDARALLATDPELKSERGRAARGLLWLMKQDQAIRLISVG 696


>gi|95929154|ref|ZP_01311898.1| ATP-dependent DNA helicase RecG [Desulfuromonas acetoxidans DSM
           684]
 gi|95134652|gb|EAT16307.1| ATP-dependent DNA helicase RecG [Desulfuromonas acetoxidans DSM
           684]
          Length = 704

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 256/701 (36%), Positives = 397/701 (56%), Gaps = 16/701 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PLS+ RGVG K    L+++            DLL+  P  + DR +   I+++    
Sbjct: 11  LNTPLSSLRGVGPKLCEKLTRL------GLHTVEDLLYTLPHRYEDRRHFSTINQLKPGE 64

Query: 69  IVTITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
                G I       + + R   +++++ D TG++ L +F+ + + +K  +  GR + V 
Sbjct: 65  PGQFRGKILNADEVPIGRGRQKLFEVVVGDDTGQMLLKWFHYRRDWMKKNYTPGRIVQVY 124

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVL 185
           G+++    R  ++HP   F+++ D     I  VY L  GLS    +    +A+      +
Sbjct: 125 GEVRFYSGRREILHPEIDFNDATDSASLRILPVYPLTEGLSQKQLRNFCQQAVADYADSV 184

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241
           P  + + +++K+    + +A    H P    DF    +   PAR  L YDE    Q+ L 
Sbjct: 185 PTHLPEWVMKKRDLLPLNQALLHCHCPPVDSDFLCLQQGQDPARRTLVYDEFFYLQLGLT 244

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R+  + E G    +E +  Q + + +PFS T +Q+  + +I QDM   + M R++QGD
Sbjct: 245 LRRQGVQVEQGRAFTLEHRYTQPLAKALPFSLTAAQKRVLGEIKQDMLAPHPMNRLIQGD 304

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VAL+A   AVE G QA ++AP  ILA+QHY     +     +   ++TG+ P+
Sbjct: 305 VGSGKTIVALMAALIAVENGAQAAVLAPTEILAEQHYNQFHHWMTQLGLHCALLTGSTPK 364

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           + R+  L+ +AHG+  +++GTHA+ Q  + +  L LVI+DEQHRFGVQQR +L +K   P
Sbjct: 365 SERQTLLDGLAHGEIKLLVGTHAILQPDVTFADLGLVIIDEQHRFGVQQRHQLRKKGHNP 424

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             L+MTATPIPRTL LT  GD+ +S I E P GR PI T I   ++  ++++ ++  L +
Sbjct: 425 DTLVMTATPIPRTLSLTLYGDLAMSVIDELPPGRTPITTRIARSSQRPQLLDFVRRELDK 484

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKN 539
           G + Y++ P +EE + S  ++  E F +L +   S  S  ++HGR+   DKE+VMD FK 
Sbjct: 485 GHQVYFVYPLVEESERSELKAATEAFEALEKELGSEYSGGLLHGRLHPRDKEAVMDKFKQ 544

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G    L+ATTVIEVGIDV +AS ++IE+AE FGLAQLHQLRGRVGRG   S C+L+    
Sbjct: 545 GQIHYLVATTVIEVGIDVPNASAMVIEHAERFGLAQLHQLRGRVGRGAAKSYCVLVPSEQ 604

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            S +   RL++++++ DGF+IAE DL+ R  GE LG +Q+G+  F +A      SLLE A
Sbjct: 605 CSHDGQQRLNIMQSSNDGFVIAEADLELRGPGEFLGTRQAGIENFRVANLLRDASLLEQA 664

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R+DA  ++ QD  LTS +  ++R  L   ++    +    G
Sbjct: 665 REDALQLIEQDDFLTSPQYYAVRETLK-QRWGSRLELASVG 704


>gi|89069524|ref|ZP_01156868.1| Haem peroxidase [Oceanicola granulosus HTCC2516]
 gi|89044859|gb|EAR50949.1| Haem peroxidase [Oceanicola granulosus HTCC2516]
          Length = 696

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 296/700 (42%), Positives = 421/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA LS   G+G K +  L+       A   +  D+LF  P S IDR  R  +
Sbjct: 4   RPEPLWPLFADLSELDGIGPKTAKALA------GAGIGKPRDMLFTLPHSGIDRTLRATV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            E+      T+   I  H        RPY++ + D   +  L+FF  + E ++     G+
Sbjct: 58  REVVPPATATVEVEIGAHHP-PSGPSRPYRVTVRDAETDFQLVFFRARGEWMRKQLPTGQ 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP +I   ++    P  E VY L  G++  L  +    AL R
Sbjct: 117 RRIVSGKVELFDGIAQMVHPDHIVTRAEAEALPSYEPVYPLSGGVTQKLMWRATRSALER 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P L EWI+  L+ ++ +PS   A +  H P        T PAR RLAYDE LA QI L 
Sbjct: 177 APRLAEWIDPGLMLREGWPSWHAALHAAHAPASGAALAPTDPARRRLAYDEFLAHQITLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G     +G + +++L  +P++PT +Q  AI +I  DM+ + RM R+LQGD
Sbjct: 237 LARASMRRGRGRATAGDGALRERVLAALPYAPTGAQTRAISEIAADMAAETRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVAL+A+  AVEAGGQ V+MAP  ILA+QH+E ++    +  I +E++TG    
Sbjct: 297 VGAGKTLVALMALLVAVEAGGQGVMMAPTEILARQHHEGLRPLAASAGIRLELLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R   L  +A G+  +++GTHA+FQ  + +  L L +VDEQHRFGV QR++L  K    
Sbjct: 357 RVRDDKLTALAAGEIDVLVGTHAVFQKDVTFADLRLAVVDEQHRFGVAQRMELGAKGARA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKPAGR PIKT +I   RIDEV+  L+  L+E
Sbjct: 417 DVLVMTATPIPRSLSLAQYGDMDVSILDEKPAGRLPIKTSMISAGRIDEVVVSLRRALAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP ++E + S   +   R   L       +  ++HG+M    K++ M  F  G
Sbjct: 477 GRRAYWVCPLVDESEVSELTAAEARHKMLRAALGEGVVTLVHGQMPPAQKDAAMADFAAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+DV +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+LLY PPL
Sbjct: 537 RAQVLVATTVIEVGVDVPEASIMVIEGAESFGLAQLHQLRGRVGRGAAASTCLLLYRPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL +L+ TEDGF IAEEDL  R  G+++G  QSG+P+F I   E   +L+ +A+
Sbjct: 597 SETGRRRLEILRETEDGFRIAEEDLAMRGAGDLIGTAQSGLPRFRIGDVERQAALMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDL+S RGQ++R+LL+L + ++A + I  G
Sbjct: 657 SDARKLLHDDPDLSSERGQAVRMLLWLMEQDKAIRLITVG 696


>gi|84516175|ref|ZP_01003535.1| heme peroxidase [Loktanella vestfoldensis SKA53]
 gi|84509871|gb|EAQ06328.1| heme peroxidase [Loktanella vestfoldensis SKA53]
          Length = 696

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 282/700 (40%), Positives = 427/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLF  L+   GVG K +  +S      +A   +  DLL   P S +DR  R  I
Sbjct: 4   RPEALFPLFGTLTRLDGVGAKTAQVMS------DAGIAKPADLLLTLPVSGVDRRRRASI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            E+    IVT+   +  H   + +  +PY+I + D      L+FF+ + + L+ +   G+
Sbjct: 58  REVIAPCIVTVEVTVGLHLPPKTKG-KPYRITVQDAETSFQLVFFHLRGDYLQKLLPTGQ 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       +VHP ++         P  E VY L  GL+  +  K    AL+ 
Sbjct: 117 RRVVSGKLELFDGIAQIVHPDHVLPPLDADTIPAFEPVYPLHAGLTQKVMWKATRSALAL 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L +WI+     ++ +P  A+A ++ HNP+   D     PAR RLAYDEL+A QI L 
Sbjct: 177 LPDLADWIDPAQKAREGWPDWAQALHLAHNPQSPVDLSPHHPARARLAYDELMAHQITLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   ++  G+    +G++ +++L  +P+SPT +Q  AI +I  D++   RM R+LQGD
Sbjct: 237 LARANARRAKGVASAGDGQLQKRVLGALPYSPTGAQTRAIAEIGADLAAPLRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA++A+   VE+ GQ V+MAP  ILA+QHY  ++       + ++++TG    
Sbjct: 297 VGSGKTLVAMMALLQVVESDGQGVMMAPTEILARQHYAGLEPLAAAAGVRLDVLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R   L  +A G   I++GTHA+FQ  + ++ L L ++DEQHRFGV QR++L  K  A 
Sbjct: 357 RDRAAKLAALAQGDIQILVGTHAVFQKDVHFHDLRLAVIDEQHRFGVAQRMELGAKGRAV 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKP++T ++   R+DE++ +L+  +++
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPVQTALVSAARMDEIVAKLRAAVAD 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +     +  +RF  L      + + ++HG+M   +K++ M  F +G
Sbjct: 477 GRQAYWVCPLVEESEIIEMTAAEDRFKRLRAALGDTVVGLVHGQMPVTEKDAAMARFVSG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C+L+Y PPL
Sbjct: 537 DTRVLVATTVIEVGVNVPNASIMMIEGAESFGLAQLHQLRGRVGRGAAASTCLLIYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RL +L+ TEDGF I+EEDL  R  G+++G  QSG+P+F IA  E    L+ +A+
Sbjct: 597 SENGRKRLEILRETEDGFRISEEDLAMRGAGDVIGTAQSGLPRFRIADLERQAGLMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDL + RGQ+ R LL+L + + A + I  G
Sbjct: 657 SDARKLLHDDPDLQTPRGQAARALLWLLEQDRAIRLISIG 696


>gi|114768814|ref|ZP_01446440.1| ATP-dependent DNA helicase RecG [alpha proteobacterium HTCC2255]
 gi|114549731|gb|EAU52612.1| ATP-dependent DNA helicase RecG [alpha proteobacterium HTCC2255]
          Length = 696

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 296/700 (42%), Positives = 442/700 (63%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLF  L+ F G+G K ++ LSK+      N     DLLF  P S + R+    +
Sbjct: 4   RPEILFPLFGQLTQFTGIGPKIAINLSKL------NINSPRDLLFTLPHSLLMRNKIETV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            +     I+ I   + +H   Q QK RPYKI ++D      L+FF+ +   L ++F  G 
Sbjct: 58  LDAINNDIIIIEIIVDEHLENQ-QKNRPYKINVSDAKASFQLVFFHARKNWLWDLFPIGE 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           K+ ++GK++    +  + HP Y+F    +   P +E +YSL  G++     K   +AL+ 
Sbjct: 117 KVLISGKLEYFDGKAQITHPDYVFKPGNEAQIPTLEPIYSLSAGVTQKTLSKATRQALNL 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP++ EWI   ++ K ++P+   A    H P+      + SP R RLAYDE+LA Q+ L 
Sbjct: 177 LPMINEWISPSIINKFAWPTWVNALKNAHEPKNINHITFDSPNRLRLAYDEMLAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           + R+ ++K  GI       +++K++  IPF  T +Q+  I++I  DMS+  RM R+LQGD
Sbjct: 237 IARENYRKSKGIKNIGNKSLSKKVMEFIPFELTNAQKRVIEEIRNDMSEPFRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTL+A + M  A+EAGGQAVIMAP  IL +QH + +K   +   I++E ++G    
Sbjct: 297 VGSGKTLIAFLCMVTAIEAGGQAVIMAPTEILTKQHEDTLKPLAEKAGIVLESLSGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R+  +E IA G+  II+GTHA+FQ+SI+Y  L L I+DEQHRFGV+QR+ L  K  A 
Sbjct: 357 KERKSKIEAIATGKIQIIVGTHAVFQESIKYNDLRLAIIDEQHRFGVRQRMDLGNKGDAV 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L+MTATPIPR+L LT+ GD+++S++ EKP GRKPI TV++  +RI EVI+RLKV +  
Sbjct: 417 DILIMTATPIPRSLALTNYGDMELSEVDEKPIGRKPINTVMVSSSRILEVIDRLKVAIET 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNG 540
           G + YW+CP +EE +     S  +R N+L +    ++I ++HG+MS  +K+ VM  F + 
Sbjct: 477 GNQIYWVCPLVEESEFLELTSAEDRANNLSKVLGKNNIGLVHGKMSGEEKDRVMSDFVDN 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG+DV +A+II+IE++E FGL+QLHQLRGRVGRG + S+C+++Y PPL
Sbjct: 537 KIKILVATTVIEVGVDVPNATIIVIEHSERFGLSQLHQLRGRVGRGADASTCLMIYEPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            K +  RL  ++ T DGF IA  DLK R  G++LG+ QSG+PKF +A  E    L+E+A+
Sbjct: 597 GKTAKKRLEAIRETNDGFKIANVDLKLRGAGDVLGVSQSGLPKFRMADIETQSHLMEMAK 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            +A+ I+T DP L S +G+++R LLY+   +E  + +  G
Sbjct: 657 DEARLIMTNDPSLNSQQGKALRNLLYIMGADEYIKLLSVG 696


>gi|91977091|ref|YP_569750.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
 gi|91683547|gb|ABE39849.1| ATP-dependent DNA helicase RecG [Rhodopseudomonas palustris BisB5]
          Length = 727

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 310/701 (44%), Positives = 441/701 (62%), Gaps = 3/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLFA ++T  GVG K       ++  G +   R +DLL + P S IDR  RPK
Sbjct: 29  MRPALLNPLFASITTLPGVGPKQDKLFRYLL--GRSETPRLVDLLLHLPVSVIDRRSRPK 86

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     +VT+  ++ +H      + R PY +  +D TG++ L FF  K + ++ +   
Sbjct: 87  IRDAEPGTVVTLEVHVDRHRPPPPGRSRAPYLVYASDDTGDVILTFFRAKADYIEKLLPI 146

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  ++G  +     + +VHP  +   +     P I+ VY L  GL++   ++   +AL
Sbjct: 147 GEKRYISGTGQLYDGTLQIVHPDRVVDEAGFAKLPKIDPVYPLTEGLAIGSLRRAEAQAL 206

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           ++LP +PEWI  ++L++  FPS+A+A N +H P +  D     P   RLAYDELLAGQ+A
Sbjct: 207 TKLPAMPEWISPEVLRRCRFPSLADALNRVHVPVEPTDILPDGPYWSRLAYDELLAGQLA 266

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G++  KI+  +P+S T SQ+ A   I +D+ Q  RMLR+LQ
Sbjct: 267 LALVRAQLRRPAGTRNAGDGRLRHKIIDALPYSLTASQQEAAAAIAEDLRQPVRMLRLLQ 326

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  EAG QA +MAP  ILA+QH + I    +   + V I+TG  
Sbjct: 327 GDVGSGKTVVALLAAAAVTEAGKQAALMAPTEILARQHIKTIAPLAERAGLSVAILTGRE 386

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR  L R+A G+   ++GTHAL QD + +  L L +VDEQHRFGV++RL LT K  
Sbjct: 387 KGKERRDLLARLAAGEIDFLVGTHALIQDDVVFKSLALAVVDEQHRFGVRERLALTSKGD 446

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL+++ATPIPRTLVLT  GD+D+S++ EKPAGR+PI T  +   R+ EVI+ +   +
Sbjct: 447 TVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRALSDGRLPEVIDAVGRAV 506

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + GK+ YWICP +EE +        +RF SL + F   + ++HGRM   DK+ VM  F +
Sbjct: 507 TAGKRVYWICPLVEESENVRLTDAEQRFESLQQRFGDKVGLVHGRMRGADKDRVMAQFAS 566

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+ATTV+EVG+DV  A+I++IENAE FGLAQLHQLRGRVGRG E S+C+LLY  P
Sbjct: 567 GEISVLVATTVVEVGVDVPAATIMVIENAERFGLAQLHQLRGRVGRGSEASTCLLLYREP 626

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + S  RL V++ T DGF IAEEDLK R EG++LG +QSG+P + IA+ ++H  L+  A
Sbjct: 627 LGEMSAARLRVIRETTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSDVHGQLITQA 686

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R +A  I+  +P L    G+++R LLYLY+ +EA   I AG
Sbjct: 687 RDEALRIMKDNPKLEGASGEALRCLLYLYERDEALPLIGAG 727


>gi|87121086|ref|ZP_01076977.1| ATP-dependent DNA helicase RecG [Marinomonas sp. MED121]
 gi|86163578|gb|EAQ64852.1| ATP-dependent DNA helicase RecG [Marinomonas sp. MED121]
          Length = 691

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 249/690 (36%), Positives = 390/690 (56%), Gaps = 22/690 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG   +  L K+      +     DL+F+ P  + DR     I ++     + +
Sbjct: 9   VTELKGVGAALAEKLQKL------HIETLQDLIFHLPIRYQDRTRVLPIGQLKFGDEIVV 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +      Q+ KRR     + D +G + L FF+      K  F  G+ I   G++++ 
Sbjct: 63  EGKVISC-EVQMGKRRSLVCRIRDDSGSLCLRFFHFNASQ-KKQFESGKAIRCFGEVRRG 120

Query: 133 KNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPEWI 189
              + M HP Y +  +        +  +Y L  G++ +  + +  +AL  L    L EW+
Sbjct: 121 STGLEMFHPEYQLVSDDWQAGDDRLTPIYPLTEGITQNKIRLLCEQALEHLSPYNLQEWL 180

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRK 245
            + + Q+   P++ +A   +H P    + E     + P + RL+++ELLA Q++L+  + 
Sbjct: 181 PETVRQEFQLPALYDAVKYLHQPPTDANIEELKSGSHPTQYRLSFEELLAHQLSLIGKKF 240

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + K+++ I +N  G++  K+L+N+PFSPT +Q   + +IL+D+ + + MLR++QGDVGSG
Sbjct: 241 KAKEDLSISLNEPGEVLTKLLKNLPFSPTNAQNRVVGEILEDLKKGHPMLRLIQGDVGSG 300

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KTLVA +  +  V    Q  +MAP  ILA+QH     ++ +   I V  + G +    R 
Sbjct: 301 KTLVAAMTASVFVAQNLQVAVMAPTEILAEQHLINFSQWFEPLGIEVAWMVGKLKGKQRE 360

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----AP 421
           + L +IA G A I++GTHALFQDS++++ L L I+DEQHRFGV QR+ L +K       P
Sbjct: 361 QELAKIASGDAKIVVGTHALFQDSVEFHNLSLAIIDEQHRFGVHQRMALREKGMNGQLQP 420

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +++  D+D S I E P GR P+ T+++   R DEVI R++    E
Sbjct: 421 HQLIMTATPIPRTLAMSAYADLDCSIIDELPPGRTPVTTIVVSDQRRDEVISRVQAACQE 480

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+C  IEE      ++  +    L E     +I ++HGR+   +K  +M  FK G
Sbjct: 481 GQQAYWVCTLIEESDALQCQAAEDTATMLSEQLQGLAIGLVHGRLKAQEKADIMARFKAG 540

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LL+ATTVIEVG+DV +AS+++IEN E  GLAQLHQLRGRVGRG   S C+LLY  PL
Sbjct: 541 ELQLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGSAASHCVLLYKTPL 600

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            +    RLS ++ T DGF IAE+DL+ R  GE+LG +Q+G+ +F +A  +    LL+  +
Sbjct: 601 GQQGKARLSTMRETSDGFKIAEKDLELRGPGELLGARQTGLMEFKVADLQRDKGLLDQVQ 660

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
             A+ +    P+  S   Q  R L  +  Y
Sbjct: 661 ATAQRLYHHHPEAISPLLQ--RWLPNIDHY 688


>gi|167646874|ref|YP_001684537.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167349304|gb|ABZ72039.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 691

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 293/700 (41%), Positives = 415/700 (59%), Gaps = 9/700 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLF P+ST +GVG + +  + ++            D+LF  P+S I R     
Sbjct: 1   MRPEILFPLFTPVSTLKGVGPRVAPLVERLAG------PIVRDVLFTPPTSLIRRTATTS 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
                + ++ T    I  H   Q +  +P++I   D  G +TL +F      L+     G
Sbjct: 55  -DRAVDGQVQTFLVTIDAHLPPQ-RAGQPWRIRAWDEHGFVTLTWFKGYGSHLERAHPVG 112

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            +  V+GK+++  + I + HP Y+    +    P +E VY    GL    F+K   EAL 
Sbjct: 113 ARRAVSGKVERFGSEIQVAHPDYLLEAERAAEIPPVEPVYPATAGLPSRTFRKFAQEALE 172

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           R   LPEW +   L ++ FP+  EA  ++HNPR   D    S AR RLAYDELLA Q+A 
Sbjct: 173 RAAPLPEWQDPAWLTREGFPAWREALALLHNPRAEIDLSPMSIARRRLAYDELLAHQLA- 231

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L  RK  K+    P  V G ++    + +PF  T +Q  A+ ++  DM+   RM R+LQG
Sbjct: 232 LAQRKAGKRSHPAPRIVAGPLSDAAEKALPFKLTGAQIRALSEVRGDMASGERMGRLLQG 291

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA++AMA A  +G Q+ +MAP  ILA+QHYE +    +   + V ++TG   
Sbjct: 292 DVGSGKTVVAMLAMADAASSGLQSALMAPTEILARQHYETLAPPLEAQGLAVILLTGRDK 351

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            + R   L ++A G A + +GTHALFQD + +  L L I+DEQHRFGV +R +L  K   
Sbjct: 352 GSARASKLAKLADGSAAVAVGTHALFQDDVVFKGLGLTIIDEQHRFGVNERKRLQDKGEG 411

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            H++ M+ATPIPRTL LT  GD+D+S+I EKP GR P+ T   P  RI E+I RLK    
Sbjct: 412 AHLVAMSATPIPRTLELTVFGDLDVSRIDEKPPGRTPVATRAAPTPRIPEIIARLKAAAQ 471

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G +A+WICP + E  + + R    R  SL E    S+ ++HG+M   +K++VM  F +G
Sbjct: 472 AGAQAFWICPLVSESDKIDLRDAERRAASLREAIGPSVGLVHGQMPAAEKDAVMADFVDG 531

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTV+EVG++V +ASI++IE+A+ FGLAQLHQLRGRVGRG   SSC+LLY PPL
Sbjct: 532 KVSVLVATTVVEVGVNVPNASIMVIEHADRFGLAQLHQLRGRVGRGSRESSCVLLYDPPL 591

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+ +  RL +L+ ++DGF IAE+DL+ R  G+ LG+KQSG P + +A P  H  L+ +A 
Sbjct: 592 SEVAQQRLDILRRSDDGFEIAEKDLELRGGGDPLGLKQSGFPAYKLADPVAHRDLIAVAA 651

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ IL +DPDLTS RGQ++R L  L+ +  A     AG
Sbjct: 652 DDARLILARDPDLTSPRGQAVRTLQELFDWKAASPLNDAG 691


>gi|92117584|ref|YP_577313.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14]
 gi|91800478|gb|ABE62853.1| ATP-dependent DNA helicase RecG [Nitrobacter hamburgensis X14]
          Length = 699

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 303/701 (43%), Positives = 438/701 (62%), Gaps = 3/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLFA +++  GVG +       ++  G     R IDLLF+ P S IDR  RPK
Sbjct: 1   MRPALLNPLFASVTSLSGVGPRQDKLFRYLL--GRDETPRLIDLLFHLPGSVIDRRARPK 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           + +     +VT+   + +H      + R P+ +  +D TG++ L +F  +   ++ +   
Sbjct: 59  VRDAVPGTVVTLEVTVDRHRPTPSGRSRAPHLVYASDETGDVVLTYFRAQPGYVEKLLPV 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V+G  +     + +VHP  +   +       I+ VY L  GL++   ++ I  AL
Sbjct: 119 GTKRYVSGTAQIFDGSLQIVHPDRVVDEAGFAKLSGIDPVYPLTEGLALGSLRRAIAMAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            RLP+LPEWI  D+L++ SFP + EA + +H P +  D    S    RLA+DELLAGQ+A
Sbjct: 179 QRLPLLPEWIGPDILRRCSFPPLEEALHRVHVPLELTDILPESRFWSRLAFDELLAGQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G +  +I+  +P++ T SQ+ A   I  D+ Q  RMLR+LQ
Sbjct: 239 LALVRAQLRRPAGSRHAGDGHLRNRIIDALPYALTASQQQAAAAISDDLRQPVRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  EAG Q  +MAP  ILA+QH + +        + V I+TG  
Sbjct: 299 GDVGSGKTVVALLAAAAVTEAGKQTALMAPTEILARQHIKTVAPLADRAGLRVAILTGRE 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+ + R+A+G   +++GTHAL QD + +  L L +VDEQHRFGV++RL LT K  
Sbjct: 359 KGKERREIVARLANGDIDLLVGTHALIQDDVAFKALALAVVDEQHRFGVRERLALTAKGE 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  VL+++ATPIPRTLVLT  GD+D+S++ EKPAGR+PI T  +P +R++EVIE +   +
Sbjct: 419 AVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRALPDSRLNEVIEAVGRAV 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             GK  YWICP +EE    +     +RF+SL   F   + ++HG+M  ++K+ VM  F  
Sbjct: 479 KAGKLVYWICPLVEESDTVDLTDAEQRFDSLKARFGDKVGLVHGKMRGLEKDRVMAQFAA 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               LL+ATTV+EVG+DV  A++++IENAE FGLAQLHQLRGR+GRG E S+C+LLY  P
Sbjct: 539 AEINLLVATTVVEVGVDVPAATVMVIENAERFGLAQLHQLRGRIGRGSEPSTCLLLYREP 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + S  RL V++ T DGF IAEEDLK R EG++LG +QSG+P + IA+ ++H  L+  A
Sbjct: 599 LGEVSAARLRVIRETADGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSDVHAQLITQA 658

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R +A  I+ Q+P LT   G+++R LLYL++ +EA   I AG
Sbjct: 659 RDEALRIMKQNPKLTGAHGEALRCLLYLFERDEALPLIGAG 699


>gi|192291314|ref|YP_001991919.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192285063|gb|ACF01444.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 700

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 311/702 (44%), Positives = 442/702 (62%), Gaps = 4/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLFAP+++  GVG K       +++  +    R  DLL + P+S IDR  RPK
Sbjct: 1   MRPALLNPLFAPVTSLTGVGPKQDKLFRYLLDRDD--TPRLADLLLHLPTSVIDRRARPK 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     +VT+   + +H +    + R PY +  +D TG++ L FF  K + ++ +   
Sbjct: 59  IRDAVPGTVVTLEVTVDRHRAPPPGRSRAPYLVYASDDTGDVVLTFFRAKPDFVQKLLPV 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  ++G  +     + +VHP  +         P I+ VY L  GL++   ++ + +AL
Sbjct: 119 GAKRYISGTGQLYDGTLQIVHPDRVVDEEGFAKLPQIDPVYPLTEGLAIGSLRRAVAQAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           ++LP LPEWI  ++L++  FPS A+A   +H P +  D     P   RLAYDELLAGQ+A
Sbjct: 179 TKLPALPEWISPEVLRRCRFPSFADALKHVHIPDQPTDILPDGPYWSRLAYDELLAGQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G++  KI+  +P++ T SQ+ A   I +D+ Q  RMLR+LQ
Sbjct: 239 LALVRAQLRRPAGSRNAGDGRLRHKIIDALPYALTNSQQQAAAAIAEDLRQPVRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  EAG QA +MAP  ILA+QH + I        + V I+TG  
Sbjct: 299 GDVGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHIKTIAPLADRAGMQVAILTGRE 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+ LER+A G+   ++GTHAL QD + Y  L L +VDEQHRFGV++RL LT K  
Sbjct: 359 KGKERREILERLAAGEIDFLVGTHALIQDDVIYKSLALAVVDEQHRFGVRERLALTSKGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL+++ATPIPRTLVLT  GD+D+S++ EKPAGR+PI T  +   R+ EVI+ +   +
Sbjct: 419 DVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRTLSDTRLPEVIDGIGRAI 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFK 538
           + GK+ YWICP +EE +        +RF SL + F    + ++HGRM   DK+ VM  F 
Sbjct: 479 ATGKRVYWICPLVEESENVKLTDAEQRFESLRQRFGDHQVGLVHGRMRGSDKDLVMGQFA 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTV+EVG+DV +ASI++IENAE FGLAQLHQLRGR+GRG E S+C+LLY  
Sbjct: 539 RGEISVLVATTVVEVGVDVPEASIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYRE 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + S  RL V+++T DGF IAEEDLK R EG++LG +QSG+P + IA+ E+H  L+  
Sbjct: 599 PLGELSGARLRVIRDTTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSEVHAQLITQ 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR +A  IL  +P L    G+++R LLYLY+ +EA   + AG
Sbjct: 659 ARDEALRILKDNPKLEGPSGEALRCLLYLYERDEAIPLLGAG 700


>gi|90424107|ref|YP_532477.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
 gi|90106121|gb|ABD88158.1| ATP-dependent DNA helicase RecG [Rhodopseudomonas palustris BisB18]
          Length = 699

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 303/701 (43%), Positives = 437/701 (62%), Gaps = 3/701 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFAP+++  GVG K       +++   +   R +DLL + P S IDR  RPK
Sbjct: 1   MRPPLLNPLFAPVTSLPGVGPKQDKLFRYLLDR--SETPRLVDLLLHLPVSVIDRRARPK 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     +VT+   + +H      + R P+ +  +D TG++ L +F  +   ++ +   
Sbjct: 59  IRDAVPGSMVTLEVTVDRHRPAPGGRSRAPHLVYASDDTGDVVLTYFRAQPGYVEKLLPV 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V+G  +     + +VHP  +   +       I+ VY L  GL+V   ++ + +AL
Sbjct: 119 GEKRYVSGTAQMFDGTLQIVHPDRVVDEAGLALLSGIDPVYPLTEGLAVGSLRRAVAQAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            +LP LPEW   +++++  F   AEA   +H P +  D     P   RLAYDELLAGQ+A
Sbjct: 179 LKLPTLPEWTAPEVMRRCGFAPFAEALQRVHRPVELTDILPDGPFWSRLAYDELLAGQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G +  KI+  +P++ T SQ++A   I +D+ Q  RMLR+LQ
Sbjct: 239 LALVRAQLRRPAGTRNAGDGGLRAKIIDALPYALTASQQAAAAAIAEDLRQPVRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  E G QA +MAP  ILA+QH++ +        + V I+TG  
Sbjct: 299 GDVGSGKTVVALLAAAAVAEVGKQAALMAPTEILARQHFKTVAPLAAQAGLRVAILTGRE 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+ L  +A G+ H ++GTHAL QD + +  L L +VDEQHRFGV++RL LT K  
Sbjct: 359 KGKERREILAALASGEIHCLVGTHALIQDDVVFNDLALAVVDEQHRFGVRERLALTNKGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  VL+++ATPIPRTLVL+  GD+D+S++ EKPAGR+PI T  +P +R++EV++ +   L
Sbjct: 419 AVDVLVLSATPIPRTLVLSYFGDMDLSELREKPAGRQPIDTRAVPNSRLNEVMDAVGRAL 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + GK  YWICP +EE +  +     +RF SL   +   + ++HG+M   DK+ VM  F  
Sbjct: 479 AAGKLVYWICPLVEESETVHLTDAEQRFESLKFRYGDRVGLVHGKMRGPDKDRVMAQFAA 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               LL+ATTV+EVG+DV DA+I++IENAE FGLAQLHQLRGR+GRG E S+C+LLY  P
Sbjct: 539 HEIGLLVATTVVEVGVDVPDATIMVIENAERFGLAQLHQLRGRIGRGSESSTCLLLYKEP 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L + S  RL V++ T DGF IAEEDLK R EG++LG +QSG+P + IA+PE+H  L+  A
Sbjct: 599 LGEMSAARLRVIRETTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARPEVHAQLISQA 658

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R +A  IL  +P L   RG+++R LLYL++ +EA   I AG
Sbjct: 659 RDEALQILKDNPKLKGERGEALRCLLYLFERDEALPLIGAG 699


>gi|332532738|ref|ZP_08408612.1| ATP-dependent DNA helicase RecG [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037765|gb|EGI74215.1| ATP-dependent DNA helicase RecG [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 693

 Score =  620 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 264/707 (37%), Positives = 392/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    LN    P++  +GVG K +  L K+            D+LF+ P  + DR     
Sbjct: 1   MSKPSLN--QYPITELKGVGPKMAERLLKL------GILTVQDMLFHLPLRYEDRTRLYA 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+E+S    V++   I + S     KRR     +NDGTG +TL FF   T   KN F  G
Sbjct: 53  INELSLHSHVSVEATI-ETSQITFGKRRMLVCQINDGTGRLTLRFFNF-TAAQKNAFSAG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + I   G++++ +    M HP Y   ++  +      +  VYS   GL     + +  +A
Sbjct: 111 KIIRCFGEVRRGRVGFEMSHPEYSISDTSNEQPVATTLTPVYSTTEGLKQLSIRALSEQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDE 232
           +  L    + E +            +++A  ++H P    D     + T PA++RL ++E
Sbjct: 171 IDLLNKYSVEELLPSQWQPSN--MPLSDALLLLHRPPNDVDVTALEQGTHPAQQRLVFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  ++LL +R+Q ++   + +N    +  + L  +PF+PT +Q   + +I  DM    
Sbjct: 229 LLAQNLSLLKVREQGQQVKAVALNPVNTLESQFLEQLPFAPTNAQSRVVAEIKGDMQHAY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA ++   A+  G Q  +MAP  IL++QH      +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALSALTAIAQGFQVALMAPTEILSEQHGVNFTTWFNQIGITV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R   LE+IA G+A +I+GTHALFQD +++  L+L+++DEQHRFGV QRL
Sbjct: 349 AWLGGKTKGKERVATLEKIASGEAQMIVGTHALFQDEVKFNNLVLIVIDEQHRFGVHQRL 408

Query: 413 KLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D++ S I E P GR PI TV +P  R 
Sbjct: 409 SLREKGKFGDCYPHQLVMTATPIPRTLAMTAYADLETSVIDELPPGRTPITTVALPDTRR 468

Query: 469 DEVIERLKVVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           D++I R+K+  +E G++ YW+C  I+E +    ++  +    L E     ++ ++HGRM 
Sbjct: 469 DDIIARVKLACNEQGRQVYWVCTLIDESEVLQCQAAEDSALQLKEALPDLNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+++M  FK G   +L+ATTVIEVG+DV +AS+IIIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 SAEKQAIMSEFKAGNIHVLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLYH PLS  +  RL VL+++ DGF+IAE DL+ R  GE+LG KQ+G+ +F I
Sbjct: 589 ATASHCVLLYHAPLSHTAQKRLGVLRDSNDGFVIAERDLEIRGPGEVLGTKQTGLAEFKI 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A       +L   R  A+ +L Q P++     Q  R L     Y +A
Sbjct: 649 ADLTRDKHILNQVRPIAQQMLKQHPEVVDPLIQ--RWLGNKQNYAQA 693


>gi|167036344|ref|YP_001671575.1| ATP-dependent DNA helicase RecG [Pseudomonas putida GB-1]
 gi|166862832|gb|ABZ01240.1| ATP-dependent DNA helicase RecG [Pseudomonas putida GB-1]
          Length = 692

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 253/695 (36%), Positives = 389/695 (55%), Gaps = 25/695 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG+  +  L+K+            D+LF+ P  + DR     I ++   +   
Sbjct: 8   PVTVLKGVGEAMAEKLAKV------GLENLQDVLFHLPLRYQDRTRVVPIGQLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   S   + KRR   + L DG+G +TL F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGSDVTMGKRRSLVVRLGDGSGVLTLRFYHFSNAQ-KEGLKRGTHLRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPV--LP 186
             + + + HP Y   N  +   P+   +  +Y    GL+    + +  ++L  L    LP
Sbjct: 120 GASGLEIYHPEYRALNGDEPPPPVEQTLTPIYPSTEGLTQQRLRLLCQQSLGLLGPRSLP 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           +W+  +L +      + EA   +HNP    D     E    A+ RLA++ELL  Q++   
Sbjct: 180 DWLPDELARDYQLAPLDEAIRYLHNPPADADLDELAEGQHWAQHRLAFEELLTHQLSQQR 239

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  +      +    ++  + L N+ F PT +Q+    +I  D+SQ   M+R++QGDV
Sbjct: 240 LRESLRSLRAPVLPKATRLQAQYLANLGFQPTGAQQRVANEIAYDLSQHAPMMRLVQGDV 299

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+VA +A    +EAG Q  +MAP  ILA+QHY   K++ +   I V  + G +   
Sbjct: 300 GAGKTVVAALAALQGLEAGYQVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKLKGK 359

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419
            R  +LE+IA+G   +++GTHALFQ+ +++  L L I+DEQHRFGVQQRL L +K     
Sbjct: 360 ARAASLEQIANGAP-MVVGTHALFQEEVKFKHLALAIIDEQHRFGVQQRLALRKKGVAGE 418

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++  
Sbjct: 419 LCPHQLIMTATPIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAA 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K  +M  F
Sbjct: 479 CAEGRQAYWVCTLIEESEELTCQAAESTYEELGSALGELRVGLIHGRMKPAEKAEIMAQF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYH
Sbjct: 539 KAGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL 
Sbjct: 599 PPLSQIGRERLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 658

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
             R  A+ ++ + PD  S      R L +  QY +
Sbjct: 659 AVRDAAQALVARWPDHVSPL--LDRWLRHGQQYGQ 691


>gi|294677202|ref|YP_003577817.1| ATP-dependent DNA helicase RecG [Rhodobacter capsulatus SB 1003]
 gi|294476022|gb|ADE85410.1| ATP-dependent DNA helicase RecG [Rhodobacter capsulatus SB 1003]
          Length = 697

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 289/701 (41%), Positives = 429/701 (61%), Gaps = 9/701 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP+ L PLFA + T  G+G K +  +  +        TR  D+LF  P + IDR     I
Sbjct: 4   RPAALFPLFAAIETLPGIGAKTAKAMENL------GITRPRDVLFTLPQAVIDRRPVSSI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEG 120
            E++    VT+   +  H + + +   P ++L+ DG G E  L+FF+ + + L+ +  + 
Sbjct: 58  REVTPPLTVTVEVEVLTHMAARNRAG-PSRVLVRDGAGAEFALVFFHARGDYLEKLLPKA 116

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            +  V+G+++       MVHP ++    +    P  E VY L  G++  +  K    AL+
Sbjct: 117 GRRLVSGRLELFDGFAQMVHPDHVLPLDEVEKLPRFEPVYPLTAGVTQRVMAKAAEGALT 176

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           RLP LPEWI+  L  ++ +P  A A    H P+   +   T+PAR+RLAYDEL A Q+ L
Sbjct: 177 RLPELPEWIDAALKAREGWPDWAAALRAAHAPQTQAETAVTAPARQRLAYDELFAHQMTL 236

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L R+Q +   G      G +  K+L+++PF PT +Q  A ++I  DM+  +RM R+LQG
Sbjct: 237 ALARRQARHPKGRITEGTGALTAKVLKSLPFQPTGAQLRASREIAADMATPSRMNRLLQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH+E +        + +E++TG   
Sbjct: 297 DVGAGKTLVAFLALLTAVEAGGQGVLMAPTEILARQHFEGLGTLAAAAGVRMEVLTGRDK 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            A R + L  +  G+  I++GTHA+FQ  + +  L LVI+DEQHRFGV QR++L  K   
Sbjct: 357 GAERARKLTDLLEGRIQILLGTHAVFQKDVVFQDLRLVIIDEQHRFGVAQRMELGAKGEM 416

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+MTATPIPR+L L   GD+D+S + EKP GR+P+ T +I   RI EV+  L   ++
Sbjct: 417 ADVLVMTATPIPRSLALAQYGDMDVSLLDEKPPGRQPVTTALISTARIGEVVAHLARAVA 476

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           EG++AYW+CP +EE +  +  S  ERF  L       ++ ++HG++   +K++ M  F  
Sbjct: 477 EGRQAYWVCPLVEESERVDLASAEERFAHLRMVLGEGTVGLVHGQLPPAEKDAAMADFVA 536

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRG   S+C++LY  P
Sbjct: 537 GKTRVLVATTVIEVGVNVPNASIMVIERAETFGLAQLHQLRGRVGRGAAKSTCLMLYQAP 596

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RLS+L+++EDGF IAEEDL  R  G+++G  QSG+P+F IA  E    L+ +A
Sbjct: 597 LSEGGERRLSILRDSEDGFRIAEEDLAMRGAGDVIGTAQSGLPRFRIADLERQAGLMALA 656

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           + DA+ +L  DP L S RGQ+ R+L++L + + A + I  G
Sbjct: 657 QSDARVLLAMDPALESPRGQAARMLMWLTEQDRAIRLIEVG 697


>gi|39935728|ref|NP_948004.1| ATP-dependent DNA helicase [Rhodopseudomonas palustris CGA009]
 gi|39649581|emb|CAE28103.1| ATP-dependent DNA helicase [Rhodopseudomonas palustris CGA009]
          Length = 700

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 311/702 (44%), Positives = 444/702 (63%), Gaps = 4/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLFAP+++  GVG K       +++  +    R  DLL + P+S IDR  RPK
Sbjct: 1   MRPALLNPLFAPVTSLTGVGPKQDKLFRYLLDRDD--TPRLADLLLHLPTSVIDRRARPK 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     +VT+   + +H +    + R PY +  +D TG++ L FF  K + ++ +   
Sbjct: 59  IRDAVPGTVVTLEVTVDRHRAPPPGRSRAPYLVHASDDTGDVVLTFFRAKPDFVQKLLPV 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  ++G  +     + +VHP  +         P I++VY L  GL++   ++ + +AL
Sbjct: 119 GAKRYISGTGQLYDGTLQIVHPDRVVDEEGFAKLPQIDSVYPLTEGLAIGSLRRAVAQAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           ++LP LPEWI  ++L++  FPS A+A   +H P +  D     P   RLAYDELLAGQ+A
Sbjct: 179 TKLPALPEWISPEVLRRCRFPSFADALKHVHIPDQPTDILPDGPYWSRLAYDELLAGQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G++  KI+  +P++ T SQ+ A   I +D+ Q  RMLR+LQ
Sbjct: 239 LALVRAQLRRPAGSRNAGDGRLRHKIIDALPYALTNSQQQAAAAIAEDLRQPVRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  EAG QA +MAP  ILA+QH + I    +   + V I+TG  
Sbjct: 299 GDVGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHIKTIAPLAERAGMQVAILTGRE 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+ LER+A G+   ++GTHAL QD + Y  L L +VDEQHRFGV++RL LT K  
Sbjct: 359 KGKERREILERLAAGEIDFLVGTHALIQDDVIYKSLALAVVDEQHRFGVRERLALTSKGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL+++ATPIPRTLVLT  GD+D+S++ EKPAGR+PI T  +   R+ EVI+ +   +
Sbjct: 419 DVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRTLSDTRLPEVIDGIGRAI 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFK 538
           + GK+ YWICP +EE +        +RF SL + F    + ++HGRM   DK+ VM  F 
Sbjct: 479 AAGKRVYWICPLVEESENVKLTDAEQRFESLRQRFGDHQVGLVHGRMRGSDKDLVMGQFA 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTV+EVG+DV +ASI++IENAE FGLAQLHQLRGR+GRG E S+C+LLY  
Sbjct: 539 RGEISVLVATTVVEVGVDVPEASIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYRE 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + S  RL V+++T DGF IAEEDLK R EG++LG +QSG+P + IA+ E+H  L+  
Sbjct: 599 PLGELSGARLRVIRDTTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSEVHAQLITQ 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR +A  IL  +P L    G+++R LLYLY+ +EA   + AG
Sbjct: 659 ARDEALRILKDNPKLEGPSGEALRCLLYLYERDEAIPLLGAG 700


>gi|83858280|ref|ZP_00951802.1| RecG, ATP-dependent DNA helicase [Oceanicaulis alexandrii HTCC2633]
 gi|83853103|gb|EAP90955.1| RecG, ATP-dependent DNA helicase [Oceanicaulis alexandrii HTCC2633]
          Length = 697

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 293/704 (41%), Positives = 439/704 (62%), Gaps = 11/704 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFA L+T +GVG + +  + K+         R  DL+F  P+  +DR +R  
Sbjct: 1   MRPQSLFPLFADLTTLKGVGPRLAALMEKVAG------PRVKDLVFTAPTGLVDRTHRVS 54

Query: 61  ISEISE---ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVF 117
           IS+  +   + +VTI   +  H      K +PYK+ + D TG + L+FF  K++ L+ + 
Sbjct: 55  ISDAGDAGAQTLVTIEAEVEAHIPRPTMK-QPYKVRMRDETGWLHLIFFNAKSDYLRRML 113

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
            EG +  V+GK ++  + I +VHP  I    +  +  L++ VY L  GLS+++ +K + E
Sbjct: 114 PEGSRRIVSGKAERFASEIQIVHPDLIADPKEVEDADLLQPVYPLTAGLSINVMRKAMRE 173

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           ALS LP LPEWI+  L  ++ +    EA   +H P+   D E ++  R+RLA+DEL A Q
Sbjct: 174 ALSTLPDLPEWIDAPLKAREGWLGWREALLELHAPQSGLDLEPSALVRKRLAFDELFAHQ 233

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L R+  K   G P++ +G+I  K+L + PF+PT +Q  A +    DM    RM+R+
Sbjct: 234 LALKLARRDRKARKGRPLSGDGRIVVKVLEHAPFTPTGAQMRAFEACKTDMDSSQRMMRL 293

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVGSGKT VA +  A A EAG Q  +MAP  I+A+QH + +    +   + V  +TG
Sbjct: 294 VHGDVGSGKTFVAALCAAHAAEAGVQTALMAPTEIVARQHAKVLTALLEPAGVSVVALTG 353

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 R++   +IA G A +I GTHALFQDS+++  L  V++DEQHRFGV  R KLT K
Sbjct: 354 RDKGKPRKEIEAQIASGDAQVICGTHALFQDSVEFSDLGFVVIDEQHRFGVSDRRKLTMK 413

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             AP VL M+ATPIPRTL L + GD+D+S++ EKPAGR P  T ++   R+ E++E LK 
Sbjct: 414 GRAPDVLAMSATPIPRTLTLAAFGDLDVSRLDEKPAGRIPPDTRVVSGERLHEIVEGLKR 473

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDS 536
            LS+G++AYW+CP +E+   S+  +   R + L E    + I ++HGRM   DK+   + 
Sbjct: 474 ALSKGERAYWVCPLVEDSDVSDLAAAEARHHMLSEMLPEARIGLVHGRMPARDKQKAAED 533

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G   +L+ATTVIEVG+D  DA+I++IE+AE FGLAQLHQLRGRVGRG++ S+C+LLY
Sbjct: 534 FRAGEIDVLVATTVIEVGVDAPDATIMVIEHAERFGLAQLHQLRGRVGRGDKPSTCLLLY 593

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H  L + +  RL ++++++DGF+IAEED + R  G+ LG+KQSG+P + IA    H  LL
Sbjct: 594 HGQLGETARARLEIMRSSDDGFVIAEEDWRLRGSGDPLGLKQSGLPDYRIADLAAHADLL 653

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           E+A   A++   ++      RG+++R LLYL++ +E  + +R+G
Sbjct: 654 ELASDAAQYETAREEVFAGERGEALRTLLYLFERDEGVRLMRSG 697


>gi|295689317|ref|YP_003593010.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295431220|gb|ADG10392.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 698

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 283/708 (39%), Positives = 413/708 (58%), Gaps = 18/708 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLF  +ST +GVG + +  L K+            D+LF  P+  I R     
Sbjct: 1   MRPEILFPLFTSVSTLKGVGPRVAPLLEKLAG------PIVRDVLFTAPTGLI-RRSVTT 53

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           + +  E ++ T    I  H        +P+KI   DGTG +TL++F      L+    +G
Sbjct: 54  VDQAVEGQVQTFVVTIDTHQPPHRLG-QPWKIRAWDGTGFLTLIWFKGHGPHLERQHPKG 112

Query: 121 RKITVTGKIKK---LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
            +  V+GK+++     + + + HP YI    +  + P +E VY    GL    F+K  +E
Sbjct: 113 ARRAVSGKVERPEGFASELQIAHPDYIVAEERAGDIPDVETVYPATAGLPSRTFRKFALE 172

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           AL R P LPEW +    +++  P   EA   +H P    D    +  R RLAYDELLA Q
Sbjct: 173 ALERAPDLPEWQDAAWRERERLPGWREALAALHAPASEADLSPLARPRRRLAYDELLAHQ 232

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +A+   +   +   G  I   G +++   + +PF  T +Q  ++ +I  D++   RM R+
Sbjct: 233 LAMAQRKASRRAHPGPVIRG-GPLSEAAEKALPFKLTSAQIRSLSEIRGDLASGERMSRL 291

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VA++AMA A  AG Q+ +MAP  ILA+QH+E I        + V ++TG
Sbjct: 292 LQGDVGSGKTVVAMLAMADAASAGLQSALMAPTEILARQHFETIAAPLAALGLSVILLTG 351

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               A R   L  +A G   I +GTHALFQD + +  L L I+DEQHRFGV +R +L  K
Sbjct: 352 RDKGAGRAAKLAGLADGAHQIAVGTHALFQDDVAFKALALTIIDEQHRFGVNERRRLQDK 411

Query: 418 ATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
                    H+L M+ATPIPRTL LT  GD+D+S+I EKP GR P+ T   P  R+ E++
Sbjct: 412 GPPDVDWGVHLLAMSATPIPRTLELTVFGDLDVSRIDEKPPGRTPVATRAAPTPRVPEIV 471

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           ERL+  ++ G +A+WICP + E ++ + R+  +R   L  H    + ++HG+M   +K++
Sbjct: 472 ERLRAAIAGGAQAFWICPLVSESEKVDLRAAEDRAADLARHLPG-VGLVHGQMPPAEKDA 530

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM  F +G   +L+ATTV+EVG++V +ASI++IE+A+ FGLAQLHQLRGRVGRG   SSC
Sbjct: 531 VMQRFVDGEVSVLVATTVVEVGVNVPNASIMVIEHADRFGLAQLHQLRGRVGRGTRESSC 590

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY PPLS+ +  RL +L+ ++DGF IAE DL+ R  G+ LG+KQSG P + +A P  H
Sbjct: 591 VLLYDPPLSEVAQKRLDILRRSDDGFEIAERDLELRGGGDPLGLKQSGFPAYRLADPVAH 650

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             L+ +A  DA+ IL +DP+LTS RGQ++R+L  L+ +        AG
Sbjct: 651 RDLIAVAADDARLILARDPELTSPRGQALRMLQELFDWKPVSALNEAG 698


>gi|78222986|ref|YP_384733.1| ATP-dependent DNA helicase RecG [Geobacter metallireducens GS-15]
 gi|78194241|gb|ABB32008.1| ATP-dependent DNA helicase RecG [Geobacter metallireducens GS-15]
          Length = 767

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 245/706 (34%), Positives = 383/706 (54%), Gaps = 25/706 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG K +  L K             D L+  P+ + DR     I+ +    
Sbjct: 65  LETPIQFIKGVGPKLAETLGK------KGIATVEDALYLLPNRYEDRRQVVPIARLCPGV 118

Query: 69  IVTITGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
               +G +        +  RR +++++ D +G I+  +F      LK  + EGR+   TG
Sbjct: 119 TSVFSGEVITADVVSTKGGRRFFEVVVRDASGTISFKWFNFNPAFLKKTWKEGRRGIFTG 178

Query: 128 KIKKLKNRIIMVHPHYIFHNSQD----------VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
            + +   +  + HP   +    +          V+F  +  VY L  GL     +K++  
Sbjct: 179 LVSQFGLQREVHHPDAEWLAEGETVASVMARDPVSFGRVVPVYPLTEGLHQKTLRKVMKG 238

Query: 178 ALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDE 232
            + +    +   +  ++  ++    +++A   +H P    D     E   PA   L +DE
Sbjct: 239 VVDQYASCVESALPLEVAGRQGLLPLSDALRRVHFPDSDADPRGLEEGKDPANRTLVFDE 298

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
               ++ L + ++    E GI   V     + +L+ +PFS T +Q   + +I +DM   +
Sbjct: 299 FFFLELGLAMKKRGVTLESGIAFTVSHTYTKPLLKLLPFSLTGAQRRVLAEIKEDMMAPH 358

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++QGDVG GKTLVAL+A   AVE G Q  IMAP  ILA+QHY  I ++     + V
Sbjct: 359 PMHRLVQGDVGCGKTLVALMAALVAVENGYQVAIMAPTEILAEQHYLNIHRWCDELGVSV 418

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++T ++    ++ ALER+A G+A I+IGTHA+ QD +++++L L IVDEQHRFGV QR 
Sbjct: 419 TLVTSSLKGKAKKDALERVAGGEAQIVIGTHAVIQDKVEFHRLGLGIVDEQHRFGVLQRG 478

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L +K   P +L+MTATPIPRTL +T  GD+ +S I E P GR PI+T I   +R  +V 
Sbjct: 479 LLRKKGENPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPIETRICFESRRKQVY 538

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDK 530
             ++  +++G +AY I P +EE ++S+ ++  +    L         + I+HGRM   +K
Sbjct: 539 GIIRDEVTKGHQAYVIYPLVEESEKSDLKAATQMAEHLANDIFPELRLGILHGRMKPEEK 598

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E+VM SFK     +L+ATTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRVGRG E S
Sbjct: 599 EAVMRSFKAREIDILVATTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVGRGSEKS 658

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            CIL+    LS+++  RL V+++T DGF IAE DL+ R  G+ LG +Q+G+P F +A   
Sbjct: 659 RCILMAGERLSEDAEKRLRVMESTTDGFRIAEADLEIRGPGDFLGTRQAGIPDFRVANIL 718

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
               +LE AR++A  +   DP+L   R   +R  L   ++    + 
Sbjct: 719 RDGRILEEARQEAFAVAEVDPELRLPRHDKLRTELAR-RWGGRLEL 763


>gi|148554435|ref|YP_001262017.1| DEAD/DEAH box helicase domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148499625|gb|ABQ67879.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1]
          Length = 686

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 293/702 (41%), Positives = 430/702 (61%), Gaps = 18/702 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA +   +GVG   +  L K+         R +DLLF+ P+  IDR     
Sbjct: 1   MRPDILNPLFAEVEALKGVGPTLAKPLRKL------ELERVVDLLFHLPTGSIDRKPVDT 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFE 119
           +      RIVT+   +   S      R P+++   D  G  ++L++F       K +   
Sbjct: 55  VEAEDAGRIVTV--RLVPTSYRASGGRGPFRVGATDQAGNVVSLVYFGGNPGWAKKLLPI 112

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V+G++      + +VHP ++   ++  + P  E+VY L  G++     ++I + +
Sbjct: 113 GEPRIVSGRLDLYGQELQIVHPDHVLSPAEAADLPTRESVYPLSEGITSRRLGQLIEQGI 172

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            R P LPEWIE  LLQ + +PS  +A    H    A+D     PAR RLAYDEL A Q+A
Sbjct: 173 ERAPELPEWIEPSLLQARGWPSWHDAVVRAHA--DAQDE----PARARLAYDELFANQLA 226

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+L+R   +K  G+P+  +G++  ++   +P++PT +Q  A+ +I  D+ Q   M R+LQ
Sbjct: 227 LMLVRASSRKRRGLPLKGDGRLRDQL--KLPYAPTGAQSRAVAEIEGDLVQPAPMTRLLQ 284

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +A+  AVEAG Q  ++AP  ILA+QH+E + +      + V I+TG  
Sbjct: 285 GDVGSGKTLVATMALLCAVEAGAQGALLAPTEILARQHFETLGRTLAGLPVNVAILTGRE 344

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA- 418
               R   L  +A G   I++GTHA+FQ+ + Y KL L +VDEQHRFGV QR+ L  KA 
Sbjct: 345 KGKAREATLMALADGSIDILVGTHAIFQEKVGYRKLGLAVVDEQHRFGVAQRMMLQAKAE 404

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH+L+MTATPIPRTL L+  G++D+S++ E P GR+PI+T +I   R+DEV + L   
Sbjct: 405 RPPHLLVMTATPIPRTLTLSHYGEMDVSRLDEMPPGRQPIETRVISGERLDEVAQALGRH 464

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L+ G++AYW+CP +EE ++S+  +   R  SL + F   + ++HGRM   +K++VM  F+
Sbjct: 465 LAAGRQAYWVCPLVEESEQSDLAAAEGRAESLRQWFGDKVGVVHGRMKGPEKDAVMAEFQ 524

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTVIEVG+DV +A+++IIE A+ FGLAQLHQLRGRVGRG++ S C+LL   
Sbjct: 525 AGRIGVLVATTVIEVGVDVPNATLMIIEGADRFGLAQLHQLRGRVGRGDQRSVCLLLRGN 584

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            LS+ S  RL++++ T DGF IAEEDL+ R  GEILG +QSG   F +A PE   +L+E 
Sbjct: 585 ALSETSRARLALMRETNDGFRIAEEDLRLRGAGEILGTRQSGEAAFRLAGPERTAALIEA 644

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A +DA+ ++ +D  L S RGQ+ RI LYL++ + A   +RAG
Sbjct: 645 ATQDARLLVDRDGGLDSERGQAARIALYLFERDAAVGLLRAG 686


>gi|260426067|ref|ZP_05780046.1| ATP-dependent DNA helicase RecG [Citreicella sp. SE45]
 gi|260420559|gb|EEX13810.1| ATP-dependent DNA helicase RecG [Citreicella sp. SE45]
          Length = 696

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 293/700 (41%), Positives = 426/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K +  L  +            DLLF  P   IDR  R  +
Sbjct: 4   RPEPLWPLFAELKTLDGVGPKTAQALEGLDVVAP------RDLLFTLPHGVIDRRPRETV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                  +VT+   + +H     QK RPY+I + D      L+FF+ + + L  +  EG 
Sbjct: 58  LGADLPGVVTVEVTVGRHMK-PAQKGRPYRIHVEDARSGFQLVFFHGREDYLSRILPEGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+++       MVHP ++    +    P  E VY L  G++  L  +   +AL+ 
Sbjct: 117 RRLVSGRVELFDGMAQMVHPDHVLPVDEAATLPAFEPVYPLTAGVTQKLMTRATADALTM 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P L EWI+  L  ++ +P   +A    H P  + D   T+PAR RLAYDEL+A Q+ L 
Sbjct: 177 APELGEWIDGPLKAREGWPDWRDALVRAHAPEGSGDLAPTAPARARLAYDELMAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   +K  G      G + +K+L  +PF PT +Q  A+ +I  DM+   RM R+LQGD
Sbjct: 237 LARVHRRKGKGRETIGSGALRRKVLAALPFRPTGAQMRAMDEIAGDMAAPERMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH + +K   +   ++VE++TG    
Sbjct: 297 VGAGKTLVAFMALLIAVEAGGQGVMMAPTEILARQHLDGLKPLAEAAGVVVELLTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           + R+  L  +A G  H+++GTHA+FQ  +++  L L IVDEQHRFGV+QRL+L +K  A 
Sbjct: 357 SERKAKLAALARGDIHVLVGTHAVFQADVEFADLRLAIVDEQHRFGVRQRLELGRKGAAA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPI+T ++   R+ EV+E L+  + E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTALVSAERMAEVVEHLRGAVGE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +  +  +  ERF  L      + + ++HG+M   +K++ M  F  G
Sbjct: 477 GRQAYWVCPLVEESEAVDLTAAEERFKRLRAALGEAVVGLVHGQMPPAEKDTAMARFVAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ATTVIEVG++V +ASI++IE AE+FGLAQLHQLRGRVGRGE  S+C+L+Y  PL
Sbjct: 537 ETKVLVATTVIEVGVNVPNASIMVIERAEYFGLAQLHQLRGRVGRGEAESTCLLMYQGPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            +    RL+ L+ TEDGF I+E DL+ R  G+++G  QSG+P+F +A  E    L+ +A+
Sbjct: 597 GEAGMRRLTTLRETEDGFRISEVDLEMRGAGDLIGTAQSGLPRFRVADLEHQAGLMAMAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L +DP L S RG++ R+LL+L + +EA + I  G
Sbjct: 657 TDARKLLAEDPGLESERGRAARMLLWLMRQDEAIRLISVG 696


>gi|298291679|ref|YP_003693618.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296928190|gb|ADH88999.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 694

 Score =  618 bits (1594), Expect = e-174,   Method: Composition-based stats.
 Identities = 297/700 (42%), Positives = 434/700 (62%), Gaps = 7/700 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           +RP  LNP FA ++   G+G K +   ++++  G   E R +DLL + P+S IDR  RP 
Sbjct: 2   LRPDLLNPYFASITGLPGIGPKLAKPFNRLL--GREGEARVLDLLMHLPASTIDRRARPT 59

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           +S++  + +VT+   + +H       R PY++  +D TG+I L +F      ++ +   G
Sbjct: 60  LSQVVPDTVVTLEIVVDRHVPTPRGSRAPYRVYAHDETGDIMLAYFKADRSWMERLLPVG 119

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               ++G +        M HP  +   +     P IE VY L  GL     ++ +  AL+
Sbjct: 120 ETRWISGTVTLYDGMAQMTHPDRVVDAAGLAKLPPIEPVYPLVEGLGHGHVRRAVEAALA 179

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           +   LPEW  +             A   +H P+   D     PA  RLAYDELLAGQ+AL
Sbjct: 180 QTAELPEWQGEA-----PGIGFHAALRKVHQPQDTLDASPAGPAWRRLAYDELLAGQLAL 234

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+R +  K++G P   +G ++++I   +PFS T SQ  A+K I  D++ ++RMLR+LQG
Sbjct: 235 ALVRARTTKQVGRPSVGDGSLSRRIEAALPFSLTGSQVEALKAIRADIASQDRMLRLLQG 294

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+A A+ +E G QA +MAP  ILA+QH + I+   Q   + + ++TG   
Sbjct: 295 DVGSGKTVVALLAAASVIETGRQAALMAPTEILARQHMKTIEPLAQAAGLRLALLTGREK 354

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R   L  +A+G+  ++IGTHALFQ+ + +  L L IVDEQHRFGV QRL L  K  A
Sbjct: 355 GRAREALLTALANGEIDLVIGTHALFQEGVAFRDLALAIVDEQHRFGVHQRLALAAKGEA 414

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL+MTATPIPRTLVLT  GD+D S++ EKPAGRKPI T  IP++RIDEV+  L   L+
Sbjct: 415 VDVLVMTATPIPRTLVLTYFGDMDSSELREKPAGRKPIDTRAIPLDRIDEVVASLGRALA 474

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           EG++AYWICP +EE + S+  +   R   L   F + + ++HG+M   +K++ M +F  G
Sbjct: 475 EGRRAYWICPLVEESENSDLAAAEARAGELRAWFGNRVGLVHGKMKGAEKDAAMAAFAAG 534

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTV+EVG+DV +ASII+IE+AE FGLAQLHQLRGRVGRG+  S+C+LLY  PL
Sbjct: 535 ETQILVATTVVEVGVDVPEASIIVIEHAERFGLAQLHQLRGRVGRGDAASTCLLLYRRPL 594

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + +  R+  L+ +EDGF +AE+DLK R EG++LG +QSG P F +A+ E+H  LLE AR
Sbjct: 595 GEIARQRIEALRESEDGFFLAEQDLKLRGEGDVLGTRQSGFPGFRLARLEVHGDLLERAR 654

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           ++A   +  D DL    G S+R+LL++++ + A + + AG
Sbjct: 655 REATATVKNDSDLIGPNGPSLRLLLHIFERDVAVKLLNAG 694


>gi|149915268|ref|ZP_01903796.1| ATP-dependent DNA helicase RecG [Roseobacter sp. AzwK-3b]
 gi|149810989|gb|EDM70828.1| ATP-dependent DNA helicase RecG [Roseobacter sp. AzwK-3b]
          Length = 696

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 295/700 (42%), Positives = 426/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA L T  GVG K    L      G     +  DL+F  P S +DR  R  +
Sbjct: 4   RPEALFPLFAGLETLEGVGPKTVQNL------GGLEIEKPRDLVFTLPWSGVDRRKRATV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                  +VT+   + QH +   ++   Y+I + D      L+FF+ + E L+ +   G 
Sbjct: 58  QGAELPGVVTVEVVVGQHRA-PSRRGGAYRITVEDAATAFQLVFFHARDEYLRRILPTGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP +I    +    P  E VY L  G++  + +K    AL+R
Sbjct: 117 RKIVSGKVELFDGVAQMVHPDHILDVDEAEEIPDFEPVYPLTAGVTQKMMRKAAHSALTR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L EWI+     +  +P  AEA    H P++A D     PARERLAYDE +A Q+ L 
Sbjct: 177 LPDLAEWIDPAQKAQAGWPDWAEAVRRAHGPQEAADLSAADPARERLAYDEFMAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + ++  G      G +  K+L  +P++ T +Q  AI +I  DM+ + RM R+LQGD
Sbjct: 237 LARSRLRRAKGRATMGTGALQAKVLEALPYALTGAQTRAIAEIAGDMASETRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA  A+  AVEAGGQ V+MAP  ILA+QH + ++   +   +++EI+TG    
Sbjct: 297 VGAGKTLVAFKALLIAVEAGGQGVMMAPTEILARQHLQGLQPLAEAAGVVLEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A RR  LE +  G   I++GTHA+FQ  + +  L L IVDEQHRFGV+QRL+L +K    
Sbjct: 357 AERRAKLEALQRGDIQILVGTHAVFQKDVDFADLRLAIVDEQHRFGVRQRLELGRKGAQA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPI T ++ I RIDEV++ L+  ++E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPITTALVNIGRIDEVVDHLRRAVAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP ++E +  +  S  ERF  L        + ++HG+M    K+S M +F+ G
Sbjct: 477 GRQAYWVCPLVDESEAVDLSSAEERFKRLRAALGEGVVGLVHGQMPPEQKDSAMAAFQRG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG+DV +ASI++IE AEHFGLAQLHQLRGRVGRG+  S+C+L+Y  PL
Sbjct: 537 ETSVLVSTTVIEVGVDVPNASIMVIERAEHFGLAQLHQLRGRVGRGQAASTCLLMYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL+ +++TEDGF IAE DL+ R  G+++G  QSG+P+F IA  E   +L+ +A+
Sbjct: 597 SEGGERRLTTMRDTEDGFRIAEVDLEMRGAGDLIGTAQSGLPRFRIADLEAQAALMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L   RG++ R+LL+L + ++A + I  G
Sbjct: 657 SDARKLLVDDPALEGDRGRAARVLLWLMEQDQAIRLISVG 696


>gi|304399041|ref|ZP_07380910.1| ATP-dependent DNA helicase RecG [Pantoea sp. aB]
 gi|304353501|gb|EFM17879.1| ATP-dependent DNA helicase RecG [Pantoea sp. aB]
          Length = 692

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 252/688 (36%), Positives = 386/688 (56%), Gaps = 25/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLST  GVG   +  L+KI      +     DLL + P  + DR     
Sbjct: 1   MKGRLLDAI--PLSTLTGVGASQAAKLAKI------DLHTVQDLLLHLPLRYEDRTQLYA 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+ G +  H+     +RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  INDLLPGIWATVEGEVL-HTDITFGRRRMMVCQISDGSGVLTMRFFNFNAGM-KNNLSPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++T  G+IK+ +    ++HP Y     Q        +  VY    G+     + +  +A
Sbjct: 111 RRVTAYGEIKRGQRGAEIIHPEYRIQGEQSNVTLEETLTPVYPTTEGIRQATLRNLTDQA 170

Query: 179 LSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKA----KDFEWTSPARERLAYDE 232
           L+ L   P  E + K+L       S+ +A   +H P       +      PA+ RL  +E
Sbjct: 171 LTLLESCPIAELLPKEL--SGGLISLPDALRTLHRPPPDLRLSELESGRHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   +P+     ++ ++L  +PFSPT +Q+  + +I +D++   
Sbjct: 229 LLAHNLSMLAVRAGAQRYYALPMPPRHNLSDQLLAALPFSPTNAQKRVVAEIEKDLANDF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA ++    +  G Q  +MAP  +LA+QH    +++     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALSALNVIAHGKQVALMAPTELLAEQHASNFRQWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +++GTHALFQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVAMVVGTHALFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSD 527
           +E++ R++    EG++AYW+C  +EE +    ++    + SL       +I ++HGRM  
Sbjct: 469 EEIVARVEHACREGRQAYWVCTLVEESELLEAQAAEASWESLKTALPDLNIGLVHGRMKP 528

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K++VM +FK    +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG 
Sbjct: 529 AEKQAVMQAFKANELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGA 588

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A
Sbjct: 589 VASHCVLLYKAPLSKTAQKRLQVLRDSNDGFVIAQFDLEIRGPGELLGTRQTGNAEFKVA 648

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTS 675
                 +++   ++ A+HI    P+  S
Sbjct: 649 DLLRDAAMVPEVQRVARHIHQHYPEQAS 676


>gi|317050129|ref|YP_004117777.1| ATP-dependent DNA helicase RecG [Pantoea sp. At-9b]
 gi|316951746|gb|ADU71221.1| ATP-dependent DNA helicase RecG [Pantoea sp. At-9b]
          Length = 703

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 247/685 (36%), Positives = 379/685 (55%), Gaps = 25/685 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLST  GVG   +  L+KI            DLL + P  + DR    +
Sbjct: 12  MKGRLLDAI--PLSTLTGVGASQAAKLAKI------GLYTIQDLLLHLPLRYEDRTQLYR 63

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+ G +   S     +RR     ++DG+G +T+ FF     M KN    G
Sbjct: 64  INDLLPGIWATVEGEVLS-SEITFGRRRMLVCQISDGSGVLTMRFFNFNAGM-KNSLATG 121

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++T  G+IK+ +    ++HP Y              +  VY    G+     + +  +A
Sbjct: 122 RRVTAYGEIKRGQRGAEIIHPEYRIQGEHSNVELQETLTPVYPTTEGIRQATLRNLTDQA 181

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA----KDFEWTSPARERLAYDE 232
           L+ L    + E +  +L       S+ +A   +H P       +      PA+ RL  +E
Sbjct: 182 LTLLETCAIAELLPPEL--SGGLISLPDALRTLHRPPPDLRLSELETGRHPAQRRLIMEE 239

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   +P+    ++  ++L  +PFSPT +Q+  + +I +D++   
Sbjct: 240 LLAHNLSMLAVRAGAQRHHALPMPANHQLVDQLLAALPFSPTGAQQRVVAEIERDLAHDF 299

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A    +  G Q  +MAP  +LA+QH    +++     I V
Sbjct: 300 PMMRLVQGDVGSGKTLVAAMAALNVIAYGKQVALMAPTELLAEQHANNFRQWFAPLGIEV 359

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +++GTHALFQ+ +Q+  + LVI+DEQHRFGV QRL
Sbjct: 360 GWLAGKQKGKARQAQQEAIASGQVAMVVGTHALFQEQVQFNGMALVIIDEQHRFGVHQRL 419

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R 
Sbjct: 420 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDSRR 479

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSD 527
            ++I R++    EG++AYW+C  IEE +    ++    +  L        + ++HGRM  
Sbjct: 480 SDIITRVQSACHEGRQAYWVCTLIEESELLEAQAAEATWQELKVALPDLQVGLVHGRMKP 539

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K++VM +FK    +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG 
Sbjct: 540 AEKQAVMQAFKANEIQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGA 599

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A
Sbjct: 600 IASHCVLLYKAPLSKTAQKRLQVLRDSNDGFVIAQHDLEIRGPGELLGTRQTGNAEFKVA 659

Query: 648 QPELHDSLLEIARKDAKHILTQDPD 672
                 +++   ++ A+HI    P 
Sbjct: 660 DLLRDQAMIPEVQRVARHIHQHYPQ 684


>gi|220936340|ref|YP_002515239.1| ATP-dependent DNA helicase RecG [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997650|gb|ACL74252.1| ATP-dependent DNA helicase RecG [Thioalkalivibrio sp. HL-EbGR7]
          Length = 686

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 264/691 (38%), Positives = 390/691 (56%), Gaps = 20/691 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG K +  L+KI            DLLF+ P  + DR     +  +       
Sbjct: 4   PVTVLKGVGPKLAEKLAKI------GIRTVTDLLFHLPLRYQDRTRVMPMGSLRPGDEGV 57

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  H+    + RR   + L+DGTG ITL FF+      +     G ++   G+ ++
Sbjct: 58  VEG-VVDHAEVVFRGRRMLLVRLSDGTGSITLRFFHFSAAQ-QQGLVRGLRLRCFGEARR 115

Query: 132 LKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
            +  + +VHP Y     +  +    +  +Y    GL     +++  EAL+RL  LP+W+ 
Sbjct: 116 GQAGLEIVHPEYRAVLDESASVDDTLTPIYPTTEGLHQLSLRRLTDEALARLDRLPDWLP 175

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKA----KDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
             +L     P +  A   +H P          +   PA+ RLA++EL+A  ++L  +R +
Sbjct: 176 PGVLNGAGLPDLETALRTVHRPPPDVPVAALLDGRHPAQRRLAFEELVAHHLSLARLRAR 235

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
              E   PI V+G++  ++   +PF+ T +Q+  I ++  DM++ + MLR++QGDVG+GK
Sbjct: 236 TTDEPASPIKVKGELFAQLQARLPFALTGAQQRVIAELSTDMARPHPMLRLVQGDVGAGK 295

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVA+ A   AVEAG QA +MAP  ILA+QH+           + V  ++G +    RR+
Sbjct: 296 TLVAVAACLHAVEAGYQAAVMAPTEILAEQHFHNFGDLLAPLGVNVAWLSGKLTVRARRE 355

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PH 422
           AL  +A G+A + +GTHALFQ+ + +  L LV++DEQHRFGV QR+ L +K       PH
Sbjct: 356 ALAEVAEGRARVAVGTHALFQEDVAFDDLALVVIDEQHRFGVHQRMALREKGNRDGRLPH 415

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+MTATPIPRTL +T+  D+D S I E P GR PI+TV +   R  EV+ER+   ++EG
Sbjct: 416 QLIMTATPIPRTLAMTAYADLDYSVIDELPPGRTPIRTVAVSDKRRHEVVERISGAVAEG 475

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           ++AYW+C  IEE +    ++  + F  L E     ++ ++HGRM   DKESVM  FK G 
Sbjct: 476 RQAYWVCTLIEESEALQAQAAEDTFAQLTEALPHVNVGLVHGRMKPRDKESVMARFKAGE 535

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            +LL+ATTVIEVG+DV +AS++IIENAE  GLAQLHQLRGRVGRG   SSC+LLY PPLS
Sbjct: 536 IQLLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGRGTAESSCVLLYRPPLS 595

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
             +  RL  L+ T DGF IA  DL+ R  GE+LG +Q+G  +F IA       LL+  + 
Sbjct: 596 DTARKRLDALRATTDGFEIARIDLELRGPGEVLGTRQTGDMQFRIADLLRDQDLLDAVKD 655

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            A  ++   P+  +V     R L    +Y  
Sbjct: 656 AAGRLMQACPE--NVEPLIARWLSGAEEYGR 684


>gi|316934179|ref|YP_004109161.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315601893|gb|ADU44428.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 700

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 311/702 (44%), Positives = 443/702 (63%), Gaps = 4/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLFAP+++  GVG K       +++  +    R  DLL + P+S IDR  RPK
Sbjct: 1   MRPALLNPLFAPVTSLSGVGPKQDKLFRYLLDRDD--TPRLADLLLHLPTSVIDRRARPK 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     +VT+   + +H +    + R PY +  +D TG++ L FF  K + ++ +   
Sbjct: 59  IRDAVPGTVVTLEVTVDRHRAPPPGRSRAPYLVYASDDTGDVVLTFFRAKPDYVQKLLPV 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V+G  +     + +VHP  +         P I+ VY L  GL++   ++ + +AL
Sbjct: 119 GAKRYVSGTGQLYDGTLQIVHPDRVVDEEAFAKLPQIDPVYPLTEGLAIGSLRRAVAQAL 178

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           ++LP LPEWI  ++L++  FPS AEA   +H P +  D     P   RLAYDELLAGQ+A
Sbjct: 179 TKLPALPEWISPEVLRRCRFPSFAEALKHVHIPDQPTDILPDGPYWSRLAYDELLAGQLA 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G++  KI+  +P++ T SQ+ A   I +D+ Q  RMLR+LQ
Sbjct: 239 LALVRAQLRRPAGSRNAGDGRLRHKIIDALPYALTASQQQAAAAIAEDLRQPVRMLRLLQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  EAG QA +MAP  ILA+QH + I    +   + V I+TG  
Sbjct: 299 GDVGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHIKTIAPLAERAGMQVAILTGRE 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+ LER+A G+   ++GTHAL QD + Y  L L +VDEQHRFGV++RL LT K  
Sbjct: 359 KGKERREILERLAAGEIDFLVGTHALIQDDVIYKSLALAVVDEQHRFGVRERLALTSKGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL+++ATPIPRTLVLT  GD+D+S++ EKPAGR+PI T  +   R+ EVI+ +   +
Sbjct: 419 DVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRTLSDTRLPEVIDGIGRAI 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFK 538
           + GK+ YWICP +EE +        +R+ SL + F    + ++HGRM   DK+ VM  F 
Sbjct: 479 AAGKRVYWICPLVEESENVKLTDAEQRYESLRQRFGDHQVGLVHGRMRGSDKDHVMGQFA 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTV+EVG+DV +A+I++IENAE FGLAQLHQLRGRVGRG + S+C+LLY  
Sbjct: 539 RGEISVLVATTVVEVGVDVPEATIMVIENAERFGLAQLHQLRGRVGRGADASTCLLLYRE 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + S  RL V+++T DGF IAEEDLK R EG++LG +QSG+P + IA+ E+H  L+  
Sbjct: 599 PLGELSGARLRVIRDTTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSEVHAQLITQ 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR +A  IL  +P L    G+++R LLYLY+ +EA   + AG
Sbjct: 659 ARDEALRILKDNPKLEGPSGEALRCLLYLYERDEAIPLLGAG 700


>gi|86749969|ref|YP_486465.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
 gi|86572997|gb|ABD07554.1| ATP-dependent DNA helicase RecG [Rhodopseudomonas palustris HaA2]
          Length = 728

 Score =  615 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 313/702 (44%), Positives = 439/702 (62%), Gaps = 4/702 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LNPLFAP++   GVG K       +++  +    R  DLL + P S IDR  RPK
Sbjct: 29  MRPALLNPLFAPVTGLTGVGPKQDKLFRYLLDRDD--TPRLADLLLHLPVSVIDRRSRPK 86

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I +     +VT+   + +H      + R PY +  +D TG++ L FF  K E ++ +   
Sbjct: 87  IRDAQPGTVVTLEVTVDRHRPPPPGRSRAPYLVYASDETGDVILTFFRAKPEFVEKLLPV 146

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V+G  +     + +VHP  +         P I+ VY L  GL++   ++ + +AL
Sbjct: 147 GAKRYVSGTGQLYDGTLQIVHPDRVVDEEGFAKLPKIDPVYPLTEGLAIGSLRRAVAQAL 206

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +RLP LPEWI  ++L++ SFP+ AEA   +H P +  D     P   RLAYDELLAGQ+A
Sbjct: 207 TRLPALPEWISPEVLRRCSFPAFAEALQRVHIPHEPTDILPDGPFWSRLAYDELLAGQLA 266

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R Q ++  G     +G++  KI+  +P++ T SQ++A   I +D+ Q  RMLR+LQ
Sbjct: 267 LALVRAQLRRPAGTRNAGDGRLRHKIIDALPYALTASQQAAAAAIAEDLQQPVRMLRLLQ 326

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL+A AA  EAG QA +MAP  ILA+QH + I    +   + V I+TG  
Sbjct: 327 GDVGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHIKTIAPLAERAGMQVAILTGRE 386

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR  L R+  G+   ++GTHAL QD + Y  L L +VDEQHRFGV++RL LT K  
Sbjct: 387 KGKERRDLLARLEAGEIDFLVGTHALIQDDVTYNSLALAVVDEQHRFGVRERLALTSKGD 446

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A  VL+++ATPIPRTLVLT  GD+D+S++ EKPAGR+PI T  +   R+ EVI+ +   +
Sbjct: 447 AVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRALSDTRLPEVIDGIGRAI 506

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           + GK+ YWICP +EE +        +R+ SL + F    + ++HGRM   DK+ VM  F 
Sbjct: 507 AAGKRVYWICPLVEESENVKLTDAEQRYESLRQRFGDQQVGLVHGRMKGADKDRVMAQFA 566

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTV+EVG+DV +ASI++IENAE FGLAQLHQLRGR+GRG E S+C+LLY  
Sbjct: 567 GGEISVLVATTVVEVGVDVPEASIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYKE 626

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL + S  RL V++ T DGF IAEEDLK R EG++LG +QSG+P + IA+ E+H  L+  
Sbjct: 627 PLGEMSAARLRVIRETADGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSEVHGQLITQ 686

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR +A  IL  +P L    G+++R LLYLY+ +EA   + AG
Sbjct: 687 ARDEALRILEDNPKLEGPSGEALRCLLYLYERDEAIPLLGAG 728


>gi|148263926|ref|YP_001230632.1| ATP-dependent DNA helicase RecG [Geobacter uraniireducens Rf4]
 gi|146397426|gb|ABQ26059.1| ATP-dependent DNA helicase RecG [Geobacter uraniireducens Rf4]
          Length = 829

 Score =  615 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 244/706 (34%), Positives = 382/706 (54%), Gaps = 25/706 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE- 67
           L  P+   +GVG K +  L+K         +   D LF  P  + DR    KI  +    
Sbjct: 127 LETPMQFIKGVGPKLAENLAK------KGVSVVEDALFLLPHRYEDRRTLAKIGRLRPGA 180

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V     I+  ++     +R +++ + DG+G +TL +F+     +K ++  GRK   TG
Sbjct: 181 NEVFFAEVIAADAASTRGGKRFFEVTVGDGSGTVTLKWFHFNPAFMKKIWKPGRKGIFTG 240

Query: 128 KIKKLKNRIIMVHPHYIFHNSQD----------VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           ++ +   +  + HP   +    +          ++F  I  VY L  GLS    +K++ E
Sbjct: 241 EVVQYGFQREVHHPEVEWLPEGEDLAAVMAGDPLSFGRILPVYPLTEGLSQKTLRKVMKE 300

Query: 178 ALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDE 232
           A+ R    +   +  +++ +     + +A    H P    D +      + A   LA+DE
Sbjct: 301 AVDRFVADVENHLPLEVIGRHDLMPLDKALQAAHFPANDADLQTLNNGATAAHRTLAFDE 360

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
               ++ L L +     E GI   V  K  +++L+ +PFS T +Q   + +I  DM   +
Sbjct: 361 FFFLELGLALKKNGIALEEGIDFQVTHKYTKELLKLLPFSLTNAQRRVLSEIKNDMMAPH 420

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++QGDVG GKTLVAL+A   AVE   Q  IMAP  ILA+QH+  I  +     + V
Sbjct: 421 PMHRLVQGDVGCGKTLVALMAALVAVENDYQVAIMAPTEILAEQHFLNIHHWCDALGVKV 480

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++T ++    ++ ALE IA G A ++IGTHA+ QD +++ +L L I+DEQHRFGV QR 
Sbjct: 481 ALLTSSLKGKAKKAALEEIATGNAQVVIGTHAVIQDKVEFRRLGLGIIDEQHRFGVLQRG 540

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L +K   P +L+MTATPIPRTL +T  GD+ +S I E P GR P++T I   +R  +V 
Sbjct: 541 ILKKKGQNPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPVETRIAFESRRSQVY 600

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDK 530
             ++  + +G++AY I P +EE ++S+ ++  +    L         + ++HGRM   +K
Sbjct: 601 GVIREEVKKGRQAYVIYPLVEESEKSDLKAAAQMAEQLQSDVFPDLRVGLLHGRMRPDEK 660

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E+VM +FK     +L+ATTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRVGRG + S
Sbjct: 661 EAVMAAFKARETDILVATTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVGRGSDKS 720

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            CILL    LS++   RL V+++T DGF IAE DL+ R  G+ LG +Q+G+P F +A   
Sbjct: 721 RCILLTTGRLSEDGEKRLRVMESTSDGFRIAEADLEIRGPGDFLGTRQAGLPDFRVANIL 780

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
               +LE AR +A   + +D  L +     +R  L   ++    + 
Sbjct: 781 RDGRILEEARMEAFSFVEKDRGLVAPENAGLRRELAR-RWGGRLEL 825


>gi|120553574|ref|YP_957925.1| ATP-dependent DNA helicase RecG [Marinobacter aquaeolei VT8]
 gi|120323423|gb|ABM17738.1| ATP-dependent DNA helicase RecG [Marinobacter aquaeolei VT8]
          Length = 691

 Score =  615 bits (1585), Expect = e-174,   Method: Composition-based stats.
 Identities = 264/671 (39%), Positives = 390/671 (58%), Gaps = 21/671 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L+++            DLLF+ P  + DR     +  +    I  
Sbjct: 8   PVTQLKGVGSALAEKLARL------GIHSIQDLLFHLPYRYEDRTRVVPMGSLRIGDIAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + +     + +RR  ++ L D TG + + FF+      KN   EG ++   G+++ 
Sbjct: 62  VEGEVMKADLV-MGRRRSLQVTLRDDTGFLVMRFFHFNAAQ-KNQLAEGTRVRCFGEVRP 119

Query: 132 LKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            +      HP Y              +  VY L  G+     + +  +ALS L   P  +
Sbjct: 120 GRAGYEFYHPEYQTNPPAMPPAEQATLTPVYPLTEGIQQPRVRGLCQQALSYLDRYPIKD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
           W+   LL     P I EA  ++H P          E   PA++RL  +ELLA Q++LL +
Sbjct: 180 WLPPALLADYQLPGITEAVRLVHLPPAGAPVHLLVEGKHPAQQRLVMEELLAHQLSLLQV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+Q +    +P+   G  A++ L  +PFS T +Q   + DI QD+SQ   MLR++QGDVG
Sbjct: 240 REQIQAREALPLLPAGDRAERFLEQLPFSLTGAQRHVMADIRQDLSQPVPMLRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA ++   A+EAG Q  +MAP  ILA+QHY+  + + +   + +  ++G +    
Sbjct: 300 SGKTVVAALSALQAIEAGAQVALMAPTEILAEQHYQNFRNWLEPLGVELVWLSGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R+ AL  +A G+A I IGTHALFQD + + +L LVIVDEQHRFGV QRL L +K      
Sbjct: 360 RQSALNAVAEGRAQIAIGTHALFQDDVVFQRLALVIVDEQHRFGVHQRLALREKGVGGTL 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           APH L+MTATPIPRTL +++  D+D S I E P GRKPI+T+++P +R D++IER++   
Sbjct: 420 APHQLIMTATPIPRTLAMSAYADLDTSVIDELPPGRKPIETIVLPESRRDDIIERVRKAC 479

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            EG++AYW+C  IEE +    ++       L E     SI ++HGR+   +K +VM+ FK
Sbjct: 480 REGRQAYWVCTLIEESEALQCQAAEVTAQELVERLPDLSIGLVHGRLKAQEKAAVMERFK 539

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   LL+ATTVIEVG+DV +AS+IIIEN E  GLAQLHQLRGRVGRGE+ S C+L+YHP
Sbjct: 540 DGELDLLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGEQASFCVLMYHP 599

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS N   RL  L++++DGF IAE+DL+ R  GE+LG +Q+G+ +F +A  E     +E 
Sbjct: 600 PLSNNGKARLQALRDSQDGFFIAEKDLEIRGPGEVLGTRQTGLMQFRLADFERDKGWIEP 659

Query: 659 ARKDAKHILTQ 669
            R  A  ++ +
Sbjct: 660 IRDMAPSLMRE 670


>gi|189425013|ref|YP_001952190.1| ATP-dependent DNA helicase RecG [Geobacter lovleyi SZ]
 gi|189421272|gb|ACD95670.1| ATP-dependent DNA helicase RecG [Geobacter lovleyi SZ]
          Length = 765

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 253/706 (35%), Positives = 380/706 (53%), Gaps = 25/706 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG K +  L+K             D LF  P  + DR     I ++    
Sbjct: 63  LTTGIQFIKGVGPKLAELLAK------RGIRSVEDALFCLPHRYEDRRQLIPIRQLKPGS 116

Query: 69  IVTITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
                G +    S      R+ ++ ++ D +G I L +F+     +K  +  GR+   TG
Sbjct: 117 NHVFQGTVISTESTETRGGRKVFEAVVQDESGSIVLKWFHANGVWMKRTWQVGRQGVFTG 176

Query: 128 KIKKLKNRIIMVHPHYIFHN----------SQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           ++     +  + HP   +            +  VNF  I  VY L  GL     ++++ +
Sbjct: 177 ELSSFGWKPEVHHPDVEWLEKGTDVNAVMTADPVNFGRIVPVYPLTEGLHQKGMRRVMRQ 236

Query: 178 ALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDE 232
            +   LP L   + + LL+   +  + EA   +H P          E  + A   LA+DE
Sbjct: 237 VVDTFLPNLENILPQSLLETYQYLPLREALGQVHLPPSDAPLIDLNEGRTLAHRSLAFDE 296

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
               ++ L L ++    E GI   V  +  +++++ +PF  T +Q   + +I  DM   +
Sbjct: 297 FFFWELGLALKKRGVALEEGISFRVTHRYTKELVKLLPFQLTAAQRRVLSEIKADMMASH 356

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++QGDVGSGKTLVAL+A   AVE   Q  IMAP  ILA+QH+  I  +     + V
Sbjct: 357 PMHRLVQGDVGSGKTLVALMAALVAVENDYQVAIMAPTEILAEQHWHNIHHWCDQLGVNV 416

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++T  M    +++AL+++A G+A I+IGTHA+ QD +++++L L IVDEQHRFGV QR 
Sbjct: 417 VLLTSGMRGKVKKEALQQVADGRASIVIGTHAVIQDKVEFHRLGLGIVDEQHRFGVLQRG 476

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L +K   P +L+MTATPIPRTL +T  GD+ +S I E P GR PI T I   +R  +V 
Sbjct: 477 VLKKKGANPDILVMTATPIPRTLAMTLFGDLALSVIDELPPGRTPINTKIYFESRRKQVY 536

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDK 530
           E +   + +G++AY I P +EE ++S+ ++  +    L         + ++HGRM   +K
Sbjct: 537 EMIHQEIGQGRQAYVIYPLVEESEKSDLKAATQMAEHLQADIFPGLRLGLLHGRMKPEEK 596

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E+VM SFK     +L+ATTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRVGRG   S
Sbjct: 597 EAVMASFKKQELDILVATTVIEVGIDVPNATLMVIEHAERFGLSQLHQLRGRVGRGSHRS 656

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
           SCILL    LS++   RL V++ T DGF IAE DL+ R  G+ LG +QSGMP F +A   
Sbjct: 657 SCILLTAGKLSEDGEKRLRVMEATTDGFRIAEADLEIRGPGDFLGTRQSGMPDFRVASIL 716

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
              ++LE AR  A  +L +D  L S  GQ I   L L ++ +  + 
Sbjct: 717 RDGAILEQARSAAAKLLERDEQLHSSEGQRILQEL-LQRWGKRLEL 761


>gi|16125686|ref|NP_420250.1| ATP-dependent DNA helicase RecG [Caulobacter crescentus CB15]
 gi|221234441|ref|YP_002516877.1| ATP-dependent DNA helicase recG [Caulobacter crescentus NA1000]
 gi|13422802|gb|AAK23418.1| ATP-dependent DNA helicase RecG [Caulobacter crescentus CB15]
 gi|220963613|gb|ACL94969.1| ATP-dependent DNA helicase recG [Caulobacter crescentus NA1000]
          Length = 698

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 289/708 (40%), Positives = 420/708 (59%), Gaps = 18/708 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLF  +ST +GVG + +  + K+            D+LF  PS  I R     
Sbjct: 1   MRPEILFPLFTSVSTLKGVGPRVAPLVEKLAG------PIVRDVLFTAPSGLI-RRTTTT 53

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           + +  E ++ T    I  H        +P+KI   DGTG +TL++F      L+    +G
Sbjct: 54  VDQAVENQVQTFIVTIDGHQPPHRLG-QPWKIRAWDGTGFLTLVWFKGHGPHLERQHPKG 112

Query: 121 RKITVTGKIKK---LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
            +  V+GK+++     + + + HP YI    +  + PL+E VY    GL    F+K+ +E
Sbjct: 113 ARRAVSGKVERPEVFASELQIAHPDYIVAEDKAGDIPLVETVYPATHGLPSRTFRKLALE 172

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           AL+R P L EW +   ++++  PS  +A   +H P    D    S  R RLAYDELLA Q
Sbjct: 173 ALARAPDLAEWQDAAWIEREKLPSWRDALAALHAPASEADLSPLSRPRRRLAYDELLAHQ 232

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL   +   +   G  I   G +++   + +PF  T++Q  A+ +I  D++   RM R+
Sbjct: 233 LALAQRKAARRSHPGPRIPA-GPLSEAAEKALPFKLTRAQIRALSEIRGDLASGERMSRL 291

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VA++AMA A  AG Q+ +MAP  ILA+QH+E I    +   + V ++TG
Sbjct: 292 LQGDVGSGKTVVAMLAMADAASAGFQSALMAPTEILARQHFETIAAPLEALDLSVILLTG 351

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               A R   L  +A G  HI +GTHALFQD + +  L L I+DEQHRFGV +R +L +K
Sbjct: 352 RDKGAGRAAKLAGLAEGAHHIAVGTHALFQDDVGFRALALTIIDEQHRFGVNERRRLQEK 411

Query: 418 ATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
             A      H+L M+ATPIPRTL LT  GD+D+S+I EKP GR P+ T  +P  R+ E+I
Sbjct: 412 GPANVDWGVHLLAMSATPIPRTLELTVFGDLDVSRIDEKPPGRTPVATRAVPTPRVPEII 471

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           ERL+V +S G +A+WICP + E  +   R+  +R   L  H    + ++HG+M   +K++
Sbjct: 472 ERLRVAISGGAQAFWICPLVSESDKVYLRAAEDRAADLARHLPG-VGLVHGQMPPAEKDA 530

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM  F +G   +L+ATTV+EVG++V +ASI++IE+A+ FGLAQLHQLRGRVGRG   S+C
Sbjct: 531 VMQRFVDGEVNVLVATTVVEVGVNVPNASIMVIEHADRFGLAQLHQLRGRVGRGTRESAC 590

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY PPLS+ +  RL +L+ ++DGF IAE+DL+ R  G+ LG+KQSG P + +A P  H
Sbjct: 591 VLLYDPPLSEVAQQRLDILRRSDDGFEIAEKDLELRGGGDPLGLKQSGFPAYRLADPVAH 650

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             L+ +A  DA+ IL +D  LTS RGQ++R L  L+ +        AG
Sbjct: 651 RDLIAVAADDARLILARDLALTSPRGQALRTLQELFDWTPTSVLNEAG 698


>gi|291619493|ref|YP_003522235.1| RecG [Pantoea ananatis LMG 20103]
 gi|291154523|gb|ADD79107.1| RecG [Pantoea ananatis LMG 20103]
 gi|327395802|dbj|BAK13224.1| ATP-dependent DNA helicase RecG [Pantoea ananatis AJ13355]
          Length = 692

 Score =  613 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 253/706 (35%), Positives = 386/706 (54%), Gaps = 27/706 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLST  GVG   +  L+KI            DLL + P  + DR     
Sbjct: 1   MKGRLLDAI--PLSTLTGVGASQAAKLAKI------GLHTIQDLLLHLPLRYEDRTQLYA 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+ G +  H+     +RR     ++DG+G +++ FF     M KN    G
Sbjct: 53  INDLLPGIWATVEGDVL-HTEITFGRRRMMVCQISDGSGVLSMRFFNFNAGM-KNSLAPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDV--NFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++T  G+IK+ +    ++HP Y              +  VY    G+     + +  +A
Sbjct: 111 RRVTAYGEIKRGQRGAEIIHPEYRVQGEHSTVTLEETLTPVYPTTDGIRQATLRNLTDQA 170

Query: 179 LSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L   P  E + + L       S+ EA + +H P              PA+ RL  +E
Sbjct: 171 LTLLENCPITELLPQAL--SGGLISLPEALHTLHRPPPDVKLSELESGHHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   +P+     ++ ++L  +PFSPT +Q+  + +I +D++   
Sbjct: 229 LLAHNLSMLAVRAGAQRHYALPMPARHTLSDQLLAALPFSPTSAQKRVVAEIEKDLANDF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            MLR++QGDVGSGKTLVA +A    +  G Q  +MAP  +LA+QH    +++     + V
Sbjct: 289 PMLRLVQGDVGSGKTLVAALAALNVIAHGKQVAMMAPTELLAEQHAINFRQWLAPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   + IA G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQDAIASGSVAMVVGTHALFQEQVKFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDSRR 468

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSD 527
            E+IER++    EG++AYW+C  IEE      ++    +  L+       + ++HGRM  
Sbjct: 469 SEIIERVQKACHEGRQAYWVCTLIEESDLLEAQAAEATWEELNVALPDLRVGLVHGRMKP 528

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K +VM +FK    +LLIATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG 
Sbjct: 529 AEKLAVMQAFKANEIQLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGA 588

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A
Sbjct: 589 VASHCVLLYKAPLSKTAQKRLQVLRDSNDGFVIAQHDLEIRGPGELLGTRQTGNAEFKVA 648

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
                 +++   ++ A+HI    P+    +    R L    +Y+ A
Sbjct: 649 DLLRDQAMIPEVQRVARHIHQHYPEQA--QALIERWLPETGRYSNA 692


>gi|84500837|ref|ZP_00999072.1| ATP-dependent DNA helicase RecG [Oceanicola batsensis HTCC2597]
 gi|84390904|gb|EAQ03322.1| ATP-dependent DNA helicase RecG [Oceanicola batsensis HTCC2597]
          Length = 694

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 289/700 (41%), Positives = 427/700 (61%), Gaps = 10/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA + T  GVG K +  L++I            DLLF  P+  IDR  R  I
Sbjct: 4   RPEILFPLFADVQTLPGVGPKTARHLAQI------GVETPRDLLFLLPNGTIDRRRRDTI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                   VT+   +  H     +    Y++++ D   +  L+FF+ + + L  +   G 
Sbjct: 58  RGAPLPGTVTVEVEVGAHRPAARKGG-AYRVMVRDAQEDFPLVFFHARGDYLGKLLPTGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GK++       MVHP ++    +  + P  E VY L  G++  +  K    ALSR
Sbjct: 117 RRIVSGKLELFDGIAQMVHPDHVLPPDEAGDLPEFEPVYPLTQGVTQRVMGKAAAGALSR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P L EWI+ DL+ ++ +P  ++A    H PR   +      AR RLAYDELLA Q+ L 
Sbjct: 177 APDLAEWIDPDLMAQRGWPGWSDALRAAHEPRD--EISVLDTARTRLAYDELLAHQLTLA 234

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + ++  G     +G + +++L  +P+ PT +Q  A+ +I  DM+ + RM R+LQGD
Sbjct: 235 LARARTRRGKGRVTRGDGGLRERVLAALPYRPTGAQTRALGEISADMAGETRMSRLLQGD 294

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA++A+  AVEAGGQ V+MAP  ILA+QH E +    +   + V I+TG    
Sbjct: 295 VGAGKTLVAVLALLIAVEAGGQGVMMAPTEILARQHLESVTPLAEAAGVRVAILTGRDRG 354

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R   L+ +A G+  I++GTHA+FQ  + +  L L IVDEQHRFGV+QRL+L +K    
Sbjct: 355 ADRAAKLDDLAEGRIDILLGTHAVFQSDVVFRDLRLAIVDEQHRFGVRQRLELGRKGALA 414

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPI+T ++   R+DEV++ L+  +SE
Sbjct: 415 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTALVSTARMDEVVDHLRQAVSE 474

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +  +  +  +RF  L        +A++HG+M   DK++ M  F  G
Sbjct: 475 GRRAYWVCPLVEESETVDLTAAEDRFKHLRAALGDEVVALVHGQMPPADKDAAMADFVAG 534

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +ASI++IE AE FGLAQLHQLRGRVGRGE  ++C+L+Y  PL
Sbjct: 535 RRQVLVATTVIEVGVNVPEASIMVIERAETFGLAQLHQLRGRVGRGEAQATCLLMYRAPL 594

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+ +  RL++++ TEDGF IAE DL+ R  G+++G  QSG+P+F IA  E    L+ +A+
Sbjct: 595 SEPAEKRLTLMRETEDGFRIAEVDLEMRGAGDMIGTAQSGLPRFRIADLERDTGLMALAQ 654

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L++D  L S RG++ R LL+L   +EA + I  G
Sbjct: 655 SDARALLSRDATLESDRGRAARTLLWLMGQDEAIRLISVG 694


>gi|157373470|ref|YP_001472070.1| ATP-dependent DNA helicase RecG [Shewanella sediminis HAW-EB3]
 gi|157315844|gb|ABV34942.1| ATP-dependent DNA helicase RecG [Shewanella sediminis HAW-EB3]
          Length = 691

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 258/696 (37%), Positives = 395/696 (56%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV KK +  L+K+            DLLF+ P  + DR     I+ +      T
Sbjct: 8   PVTELKGVAKKMAERLAKL------GIHTVQDLLFHLPLRYEDRTQIYPIASLYPGNYGT 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG +TL FF       KN    G  I   G+I++
Sbjct: 62  IEAVIQSSQIIQ-GRKRMLTCTVRDDTGSLTLRFFNFSVAQ-KNGLENGLTIRAYGEIRR 119

Query: 132 LKNRIIMVHPHYIFH--NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
            K++  ++HP Y     NS       +  VY    GL    + K+  +AL+ L    L E
Sbjct: 120 GKHQAEIIHPEYKLVQTNSDLPLSDTLTPVYPTTEGLKQASWIKLTEQALALLEEGGLQE 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            I  +L Q  +  S+  A  ++H P    +     + T PA++RL  +ELLA  +++L +
Sbjct: 180 LIPPEL-QPNNL-SLKAALMLLHRPHNGVNLFELEQGTHPAQQRLIQEELLAHNLSMLKL 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++  ++  + +   G++    L+++PF PT +Q+    DI  D+ +   M+R++QGDVG
Sbjct: 238 RQRSNRDKAVLMPASGQLLNPFLKSLPFKPTGAQQRVGADISTDLEKPFPMMRLVQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+E G Q  +MAP  +LA+QH E   ++ +   + V  + G +    
Sbjct: 298 SGKTIVAALAALQAIENGYQVAMMAPTELLAEQHAENFTQWFEPLGLKVGWLAGKLKGKA 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R ++L  I  G+A+++IGTHA+FQ+ + + KL L+I+DEQHRFGV QRL L +    +  
Sbjct: 358 RTQSLMDIESGEANMVIGTHAIFQEKVTFNKLALIIIDEQHRFGVHQRLGLREKGIAQGF 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV +  +R +EVIER++   
Sbjct: 418 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVATVAVSDSRRNEVIERVRQAA 477

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            ++G++AYW+C  IEE +    ++  +    L    T   + ++HGRM   +K+++M  F
Sbjct: 478 TNDGRQAYWVCTLIEESEVLECQAAEDTAEELRLMLTELKVGLVHGRMKSAEKQAIMAEF 537

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 538 KAGNLNLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLMYK 597

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS ++  RL VL+++ DGF+IA++DL+ R  GE+LG KQ+G+    IA      +L+ 
Sbjct: 598 APLSPSATKRLGVLRDSNDGFIIAQKDLEIRGPGEVLGTKQTGIADMKIADLIRDQALIP 657

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H++ Q PD  +V G   R L    Q+ +A
Sbjct: 658 HIQKLAVHLMQQAPD--NVDGIVQRWLGDREQFVQA 691


>gi|326797348|ref|YP_004315168.1| ATP-dependent DNA helicase RecG [Marinomonas mediterranea MMB-1]
 gi|326548112|gb|ADZ93332.1| ATP-dependent DNA helicase RecG [Marinomonas mediterranea MMB-1]
          Length = 693

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 256/687 (37%), Positives = 380/687 (55%), Gaps = 23/687 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             +   +GVG   +  L+K+      +     DLLF+ P  + DR     I ++      
Sbjct: 8   QDIKELKGVGGAMADKLAKL------HLHTVQDLLFHLPIRYQDRTTVVPIGQLRFGDEA 61

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            I G +      ++ KRR     + D TG ++L FF+      K       K+   G+I+
Sbjct: 62  VIEGKVIGC-EIKMGKRRSLICRVKDMTGTLSLRFFHFSAAQ-KKQLENSEKVRCFGEIR 119

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPL--IEAVYSLPTGLSVDLFKKIIVEALSRLPV--LP 186
           +      M HP Y      D       +  +Y L  GL+ +  + +  +AL RL    L 
Sbjct: 120 RGSTGFEMYHPEYSSIEEDDTLSGQQQLTPIYPLTDGLTQNKIRGLCEQALERLTPFNLQ 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLL 242
           EW+   +L + S P++AEA   +H+P K  +         PA+ RL+++ELLA Q++L+ 
Sbjct: 180 EWLPDAILNQFSLPALAEAIQFLHHPDKGVNLAQLKAGAHPAQYRLSFEELLAHQLSLIG 239

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            R + K++  I +   G + Q++L  +PFSPT +Q     ++L DMS  + MLR++QGDV
Sbjct: 240 KRIKAKEDKAIAVTEAGNLTQQLLDQLPFSPTGAQSRVFSEVLADMSSGHPMLRLVQGDV 299

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +  AA V+ G Q  IMAP  ILA+QHY   K + +   + +  + G +   
Sbjct: 300 GSGKTLVAGMTAAAVVQKGYQVAIMAPTEILAEQHYLNFKNWFEPLDVPIAWMIGKLKGK 359

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT----QKA 418
            R   L +I  G+A I++GTHALFQD++ ++ L L I+DEQHRFGV QR+ L     Q  
Sbjct: 360 QRDAELLKIKSGEAKIVVGTHALFQDTVTFHNLALAIIDEQHRFGVHQRMALREKGLQAG 419

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +++  D+D S I E P GR PI T+++   R  EVI+R++  
Sbjct: 420 FQPHQLIMTATPIPRTLAMSAYADLDCSIIDELPPGRTPINTIVVSDQRRPEVIDRVRNA 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++AYW+C  IEE +    ++  +    L E  T+  + ++HGR+   +K  +M  F
Sbjct: 480 CTEGRQAYWVCTLIEESEALQCQAAEDTALLLQEQLTNLKVGLVHGRLKAQEKADIMALF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV ++S+++IEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 540 KAGEIDLLVATTVIEVGVDVPNSSLMVIENPERLGLAQLHQLRGRVGRGTTASHCVLLYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PL +    RLS ++   DGF IAE+DL+ R  GE+LG +Q+G+ +F +A  +    LL 
Sbjct: 600 APLGQQGKERLSTMREHTDGFKIAEKDLELRGPGELLGTRQTGLLEFKVADLQRDKGLLT 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRIL 684
             +  A  +    P   S   Q  R L
Sbjct: 660 DVQSAALLLYQSYPQHVSPLLQ--RWL 684


>gi|329296823|ref|ZP_08254159.1| ATP-dependent DNA helicase RecG [Plautia stali symbiont]
          Length = 692

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 251/706 (35%), Positives = 385/706 (54%), Gaps = 27/706 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLST  GVG   +  L+K+            DLL + P  + DR    K
Sbjct: 1   MKGRLLDAI--PLSTLTGVGASQASKLAKL------GLFTIQDLLLHLPLRYEDRTQLYK 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+ G +  HS     +RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  INDLLPGIWATVEGEVL-HSEITFGRRRMLVCQISDGSGVLTMRFFNFNACM-KNSLAPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++T  G+IK+ +    ++HP Y              +  VY    G+     + +  +A
Sbjct: 111 RRVTAYGEIKRGQRGAEIIHPEYRVQGELGGVELQKTLTPVYPTTEGIRQATLRNLTDQA 170

Query: 179 LSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKA----KDFEWTSPARERLAYDE 232
           L+ L   P  E +  +L       S+ EA   +H P       +      PA++RL  +E
Sbjct: 171 LTLLESCPIAELLPPEL--SGGLISLPEALRTLHRPPPDLRLSELETGRHPAQKRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   +P+    ++  K+L  +PFSPT +Q   + +I +D++   
Sbjct: 229 LLAHNLSMLAVRAGAQRHHALPMPARHELVDKLLAALPFSPTAAQRRVVAEIERDLAHDF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A    +  G Q  +MAP  +LA+QH    +++     + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALNVIAWGKQVTLMAPTELLAEQHASNFRQWFAPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G   +  R    E IA GQ  +++GTHALFQ+ +++  + LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKRKAREAQQEAIASGQVAMVVGTHALFQEQVKFNGMALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D++ S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLNTSTIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSD 527
            ++I R++    EG++AYW+C  I+E      ++    +  L        + ++HGRM  
Sbjct: 469 SDIITRVQSACHEGRQAYWVCTLIDESDVLEVQAAEATWQELKVALPDLQVGLVHGRMKP 528

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K++VM +FK    +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGR  
Sbjct: 529 AEKQAVMAAFKANEIQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRSA 588

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A
Sbjct: 589 VASHCVLLYKAPLSKTAQKRLQVLRDSNDGFVIAQHDLEIRGPGELLGTRQTGNAEFKVA 648

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
                 S++   ++ A+HI    P+    +    R L    +Y+ A
Sbjct: 649 DLLRDQSMIPEVQRVARHIHQHYPEQA--QALIERWLPETERYSHA 692


>gi|188532204|ref|YP_001906001.1| ATP-dependent DNA helicase RecG [Erwinia tasmaniensis Et1/99]
 gi|188027246|emb|CAO95085.1| ATP-dependent DNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 693

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 261/707 (36%), Positives = 393/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL+T  GVG   +  L+++            DLL + P  + DR     
Sbjct: 1   MQGRLLDAV--PLNTLTGVGASQAAKLARL------GLVTVQDLLLHLPMRYEDRTQLYA 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+ G +  HS     +RR     + DGTG +TL FF     M KN    G
Sbjct: 53  INDLLPGIYATVEGEVL-HSDISFGRRRMLTCQIGDGTGTLTLRFFNFNAGM-KNSLAVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEA 178
           RK+T  G+IK+ +    ++HP Y       V      +  VYS   G+     + +  +A
Sbjct: 111 RKVTAYGEIKRGQRGAEIIHPEYKVQGEHSVTELQETLTPVYSTTEGVRQATLRNLTEQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           LS L    + E +  +L   +   S+++A   +H P       D +  T PA+ RL  +E
Sbjct: 171 LSLLDTSAIAELLPPEL--SRGLISLSDALRTLHRPPPDMALADLDSGTHPAQRRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   +P++   +++ ++L  +PF PT +Q+  +++I +D++   
Sbjct: 229 LLAHNLSMLAVRAGAQRYHALPMSPRHQLSDRLLAALPFRPTSAQQRVVREIEEDLAHDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +     +  G Q  +MAP  +LA+QH    +++     + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALTALNVIAWGKQVALMAPTELLAEQHANNFRQWFAPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVSMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I R+K    SEG++AYW+C  IEE +    ++    +  L       +I ++HGRM 
Sbjct: 469 ADIITRVKDACGSEGRQAYWVCTLIEESELLEAQAAQATWEELKLALPELTIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LLIATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGEIHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQCDLEIRGPGELLGTRQTGNAEFRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +L+   ++ A+HI    P+  +      R L    +Y  A
Sbjct: 649 ADLLRDQALIPEVQRVARHIHQHYPEQAA--ALIERWLPETERYTNA 693


>gi|149376197|ref|ZP_01893962.1| ATP-dependent DNA helicase RecG [Marinobacter algicola DG893]
 gi|149359602|gb|EDM48061.1| ATP-dependent DNA helicase RecG [Marinobacter algicola DG893]
          Length = 691

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 269/693 (38%), Positives = 399/693 (57%), Gaps = 24/693 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++T +GVG   +  LSK+            DLLF+ P  + DR     +  +    +  +
Sbjct: 9   VTTLKGVGNALADKLSKL------GIRSLQDLLFHLPHRYEDRTRIIPMGNLRIGDVGVV 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G + +     + +RR  ++ L D +G + + FF+      KN   EG ++   G+++  
Sbjct: 63  EGEVMKADLV-MGRRRSLQVTLKDRSGFLVMRFFHFNAAQ-KNQLTEGARVRCFGEVRPG 120

Query: 133 KNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--EW 188
           +      HP Y              +  VY L  G+     + +  +AL  L   P  +W
Sbjct: 121 RAGYEFYHPEYQVNPPPMPAQGEATLTPVYPLTEGIQQPRVRALCQQALGYLKRYPIRDW 180

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMR 244
           + ++LL     P I EA  ++H+P          E   PA++RL  +ELLA Q++LL +R
Sbjct: 181 LPEELLANYQLPGITEAVELVHSPPANAPVHLLMEGRHPAQQRLVMEELLAHQLSLLQVR 240

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +Q +    +P+   G + ++ L  +PFS T +Q   + +I QD+SQ   MLR++QGDVGS
Sbjct: 241 QQVQAREALPLLPTGDLPERFLDLLPFSLTGAQRQVMTEIRQDLSQPVPMLRLVQGDVGS 300

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA +A    + AG Q  +MAP  ILA+QHY+  + + +   I +  ++G +    R
Sbjct: 301 GKTVVAALAALQTIGAGAQVALMAPTEILAEQHYQNFRGWLEPLGIQLAWLSGKIKGKAR 360

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----TA 420
           ++ALE +  G+A ++IGTHALFQ+ + + +L LVIVDEQHRFGV QRL L +K      A
Sbjct: 361 KEALEAVGSGEATVVIGTHALFQEDVAFSRLALVIVDEQHRFGVHQRLALREKGVGGTMA 420

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH L+MTATPIPRTL +++  D+D S I E P GRKPI+T+ IP +R D+V +R++    
Sbjct: 421 PHQLIMTATPIPRTLAMSAYADLDTSVIDELPPGRKPIETIAIPDSRRDDVTDRVRKACK 480

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           EG++AYW+C  IEE +    ++       L E      + ++HGR+   +K +VM+ FKN
Sbjct: 481 EGRQAYWVCTLIEESEALQCQAAEGTAQELAERLPDLKVGLVHGRLKAAEKAAVMEQFKN 540

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   LL+ATTVIEVG+DV +AS+IIIEN E  GLAQLHQLRGRVGRGEE S C+L+YHPP
Sbjct: 541 GELDLLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGEEASFCVLMYHPP 600

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS N   RL  L++++DGF IAE+DL+ R  GE+LG +Q+GM +F +A  E     +E  
Sbjct: 601 LSMNGKARLQALRDSQDGFKIAEKDLEIRGPGEVLGTRQTGMMQFRLADFERDKGWIEPI 660

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           RK A  ++ Q P L  V G   R L    +Y +
Sbjct: 661 RKMAPPLMKQ-PAL--VNGLIRRWLGERIRYGD 690


>gi|317494701|ref|ZP_07953113.1| ATP-dependent DNA helicase RecG [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917303|gb|EFV38650.1| ATP-dependent DNA helicase RecG [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 693

 Score =  612 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 258/707 (36%), Positives = 390/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +   L++  GVG   +  L+KI            DLL + P  + DR     
Sbjct: 1   MKGRLLDAIA--LTSLAGVGASQAGKLAKI------GLENIQDLLLHLPLRYEDRTRLYA 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      T+ G + + +     +RR     ++DGTG +T+ FF     M KN    G
Sbjct: 53  IKDLLPGLFATVEGEVLR-TDISFGRRRMMTSQISDGTGMLTMRFFNFNAAM-KNSLSPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + +   G+IK+      ++HP Y      +       +  VY    G+     +K+  +A
Sbjct: 111 KHVLAYGEIKRGNLGAEIIHPEYKIQGETENVELQEALTPVYPTTEGIRQATLRKLTDQA 170

Query: 179 LSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFEW-TSPARERLAYDE 232
           LS L  +P  E +  +L +     S+ +A  ++H P       D E    PA+ RL  +E
Sbjct: 171 LSLLDTVPIAELLPDELRR--GLMSLPDALRMLHRPPPHMQLADLEHGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +    + ++ + ++   +L ++PF PT +QE  + DI  DM++  
Sbjct: 229 LLAHNLSMLAVRAGAQSHKALSLSADDRLKNLMLASLPFKPTAAQERVVADIEADMAKPV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A    +  G Q  +MAP  +LA+QH    +++ +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRTIAHGKQVALMAPTELLAEQHANNFRQWFEPLGLKV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+  +E IA G+  +I+GTHA+FQD +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQTQMEAIASGEVDMIVGTHAIFQDQVQFSGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDSRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++IER+K   L EG++AYW+C  IEE +    ++       L        +A++HGRM 
Sbjct: 469 TDIIERVKNACLKEGRQAYWVCTLIEESEMLEAQAAEATAEELKLLLPEIKVALVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 AAEKQEVMRAFKAGETQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLS+ +  RL VL+++ DGF+IA+ DL+ R  GE+LG KQ+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSQTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTKQTGSAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +L+   ++ A+HI    P+    +    R L    +Y  A
Sbjct: 649 ADLLRDQALIPEVQRIARHIHQNYPE--HAQALIERWLPERSRYTNA 693


>gi|104784351|ref|YP_610849.1| ATP-dependent DNA helicase RecG [Pseudomonas entomophila L48]
 gi|95113338|emb|CAK18066.1| ATP-dependent DNA helicase [Pseudomonas entomophila L48]
          Length = 692

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 259/695 (37%), Positives = 391/695 (56%), Gaps = 25/695 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L+K+            DLLF+ P  + DR     I ++   +   
Sbjct: 8   PVTALKGVGDAMAEKLAKV------GLENLQDLLFHLPLRYQDRTRVVPIGQLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVTMGKRRSLVVRLGDGTGVLSLRFYHFSNAQ-KEGLKRGTHLRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPV--LP 186
             + + + HP Y   N  +   P+   +  +Y    GL+    + +  ++L +L    LP
Sbjct: 120 GASGLEIYHPEYRALNGSEPAPPVEQTLTPIYPTTEGLTQQRLRLLCQQSLGQLGPRSLP 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           +W+  +L +      +++A   +HNP    D     E    A+ RLA++ELL  Q++   
Sbjct: 180 DWLPDELARDYQLAPLSDAIRYLHNPPSDADLDELAEGHHWAQHRLAFEELLTHQLSQQR 239

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  +      +    ++  + L N+ FSPT +Q+    +I  D+SQ   M+R++QGDV
Sbjct: 240 LRESLRSLRAPVLPKASRLPAQYLANLGFSPTGAQQRVGNEIAYDLSQPEPMMRLVQGDV 299

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+VA +A   A+EAG Q  +MAP  ILA+QHY   K++ +   I V  + G +   
Sbjct: 300 GAGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKLKGK 359

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419
            R  ALE+IA G   +++GTHALFQD +Q+  L L I+DEQHRFGVQQRL L +K     
Sbjct: 360 ARASALEQIASGTP-MVVGTHALFQDEVQFKHLALAIIDEQHRFGVQQRLALRKKGVMGQ 418

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++  
Sbjct: 419 LCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRFEVVERVRAA 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++AYW+C  IEE +E   ++    F  L        + +IHGRM   +K +VM  F
Sbjct: 479 CAEGRQAYWVCTLIEESEELTCQAAESTFEELGSALGELRVGLIHGRMKPAEKAAVMAEF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYH
Sbjct: 539 KAGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL 
Sbjct: 599 PPLSQIGRERLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 658

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
             R  A+ +L + P   S      R L +  QY +
Sbjct: 659 AVRDAAQALLARWPGHVSPL--LDRWLRHGQQYGQ 691


>gi|308188675|ref|YP_003932806.1| ATP-dependent DNA helicase [Pantoea vagans C9-1]
 gi|308059185|gb|ADO11357.1| ATP-dependent DNA helicase [Pantoea vagans C9-1]
          Length = 692

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 252/688 (36%), Positives = 384/688 (55%), Gaps = 25/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLST  GVG   +  L+KI      +     DLL + P  + DR     
Sbjct: 1   MKGRLLDAI--PLSTLTGVGASQAAKLAKI------DLHTIQDLLLHLPLRYEDRTQLYA 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      T+ G +  H+     +RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IDDLLPGIWATVEGEVL-HTDITFGRRRMMVCQISDGSGVLTMRFFNFNAGM-KNNLSPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++T  G+IK+ +    ++HP Y     Q        +  VY    G+     + +  +A
Sbjct: 111 RRVTAYGEIKRGQRGAEIIHPEYRIQGEQSNVALEETLTPVYPTTEGIRQATLRNLTDQA 170

Query: 179 LSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKA----KDFEWTSPARERLAYDE 232
           L+ L   P  E + ++L       S+ +A   +H P       +      PA+ RL  +E
Sbjct: 171 LTLLESCPIAELLPQEL--SGGLISLPDALRTLHRPPPDLRLSELESGRHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   +P+     ++ ++L  +PFSPT +Q+  + +I +D++   
Sbjct: 229 LLAHNLSMLAVRAGAQRYYALPMTPRHNLSDQLLAALPFSPTNAQKRVVTEIEKDLANDF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA ++    +    Q  +MAP  +LA+QH    +++     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALSALNVIAHDKQVALMAPTELLAEQHASNFRQWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +++GTHALFQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVAMVVGTHALFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSD 527
           DE++ R++    EG++AYW+C  IEE +    ++    + SL       +I ++HGRM  
Sbjct: 469 DEIVARVEHACREGRQAYWVCTLIEESELLEAQAAEASWESLKTALPDLNIGLVHGRMKP 528

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K++VM +FK    +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG 
Sbjct: 529 AEKQAVMQAFKANELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGA 588

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A
Sbjct: 589 VASHCVLLYKAPLSKTTQKRLQVLRDSNDGFVIAQFDLEIRGPGELLGTRQTGNAEFKVA 648

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTS 675
                 +++   ++ A+HI    P+  S
Sbjct: 649 DLLRDAAMVPEVQRVARHIHQHYPEQAS 676


>gi|114767409|ref|ZP_01446211.1| ATP-dependent DNA helicase RecG [Pelagibaca bermudensis HTCC2601]
 gi|114540494|gb|EAU43573.1| ATP-dependent DNA helicase RecG [Roseovarius sp. HTCC2601]
          Length = 696

 Score =  610 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 291/700 (41%), Positives = 424/700 (60%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L  LFA L T  GVG K +  L  +      +     DLLF  P   IDR  R  +
Sbjct: 4   RPEALWALFAELKTLDGVGPKTAQALEGL------DIVAPRDLLFTLPHGVIDRRPRDSV 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            + +   +VT+   + +H     QK RPY+I + D      L+FF+ +++ L  V  EG 
Sbjct: 58  QDANLPGVVTVEVTVGRHMK-PAQKGRPYRIHVEDAQTGFQLVFFHGRSDYLGRVLPEGS 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+++       MVHP +I    +  + P  E VY L  G++  L  +   +AL++
Sbjct: 117 RRIVSGRVELFDGMAQMVHPDHILPPEEAASLPAFEPVYPLTGGVTQKLMARASADALAK 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P L EWI+  L  ++ +P    A    H P  A      +PAR RLAYDELLA Q+ L 
Sbjct: 177 APELDEWIDGPLKAREGWPDWRAALEAAHAPYGADALSPAAPARARLAYDELLAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R   +K  G     +G + +K+L  +PF PT +Q  A+ +I +DM+   RM R+LQGD
Sbjct: 237 LARVHRRKGRGRSTRGDGALRRKVLAALPFRPTGAQMRAMDEIAEDMAGGERMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA +A+  AVEAGGQ V+MAP  ILA+QH E ++   ++  ++VEI+TG    
Sbjct: 297 VGAGKTLVAFMALLVAVEAGGQGVMMAPTEILARQHLEGLRPLAESAGVVVEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           + R+  L  +  G   I++GTHA+FQ  + +  L L IVDEQHRFGV+QRL+L +K    
Sbjct: 357 SERKAKLAALERGDIQILVGTHAVFQADVAFRDLRLAIVDEQHRFGVRQRLELGRKGAGA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPI+T ++   R+ EV+E L   ++E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTALVSAERMQEVVEHLVQAVAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +  +  +  ERF  L        + ++HG+M   +K++ M  F  G
Sbjct: 477 GRQAYWVCPLVEESEAVDLTAAEERFKRLRAVLGEGVVGLVHGQMPPAEKDAAMARFVAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +A+I++IE AE FGLAQLHQLRGRVGRGE  S+C+L+Y PPL
Sbjct: 537 ETQVLVATTVIEVGVNVPNATIMVIERAEWFGLAQLHQLRGRVGRGEGDSTCLLMYQPPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            +    RL  L+ TEDGF I+E DL+ R  G+++G  QSG+P+F +A  E    L+ +A+
Sbjct: 597 GEAGMKRLKTLRETEDGFRISEVDLEMRGAGDLIGTAQSGLPRFKVADLEHQSGLMAMAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DP L S RG++ ++LL+L + +EA + I  G
Sbjct: 657 SDARKLLADDPTLESSRGRAAKMLLWLMRQDEAIRLISVG 696


>gi|269103906|ref|ZP_06156603.1| ATP-dependent DNA helicase RecG [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163804|gb|EEZ42300.1| ATP-dependent DNA helicase RecG [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 693

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 257/707 (36%), Positives = 393/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +   +S   GVG K +  LSKI            DLLF+ P  + DR     
Sbjct: 1   MSGQLLDTIA--VSELSGVGAKMAEKLSKI------GLNSVQDLLFHLPLRYEDRTRIWP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           + +I   + +T+ G +    +    KR+   + + D TG +TL FF     M KN F EG
Sbjct: 53  MGQIKPGQHLTVQGEVLTC-NMTFGKRKMLTVKIGDDTGAVTLRFFNFNAAM-KNSFIEG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+IK+ +  + + HP Y   +          +  VY    GL     + +  +A
Sbjct: 111 RQVKAYGEIKRGQYGLEINHPDYRVFSEPTELRVEETLTPVYPTTDGLRQLTLRNLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L  L    + E + + L  ++   ++A+A + +H P      +       PA++RL  +E
Sbjct: 171 LKLLDKAAVRELLPEGLYDRQ--MTLAQALHTMHRPTPDISLDQLETGKHPAQQRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R + ++    P++    + Q++L  +PF+PT++Q+  + +I  D+S   
Sbjct: 229 LLAQNLSMLALRSKGQQHNSWPLSATDTLKQQLLSALPFTPTRAQQRVVAEIENDLSLTQ 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA ++   A+E G Q  +MAP  +LA+QH      +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALSALRAIEHGYQVALMAPTELLAEQHAINFANWFNPLDIQV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R K LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKLKGKAREKELEKIESGSVKMVVGTHALFQEQVKFANLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQ----KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           +L +        PH L+MTATPIPRTL +T+  D+D S I E P GR PI TV +P +R 
Sbjct: 409 ELREKGANDGRYPHQLVMTATPIPRTLAMTAYADMDTSIIDELPPGRTPITTVAVPDSRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           D++IER++     EG++AYW+C  I+E +    ++  +    L E      I ++HGRM 
Sbjct: 469 DDIIERIRHACQTEGRQAYWVCTLIDESEVLEAQAASDTAADLTEKLPELKIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ +M  FK G   LL+ATTVIEVG+DV ++S+++IEN E  GLAQLHQLRGRVGRG
Sbjct: 529 AQEKQHIMAQFKAGELDLLVATTVIEVGVDVPNSSLMVIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+ +F +
Sbjct: 589 NIASHCVLLYKSPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGIAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A       ++   +K A++I    PD  + +    R L     Y+ A
Sbjct: 649 ADLVRDQYMIPQIQKLARYIHQNYPD--NAKAIIDRWLANRENYSNA 693


>gi|311693200|gb|ADP96073.1| DNA helicase, ATP-dependent, RecG [marine bacterium HP15]
          Length = 691

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 266/694 (38%), Positives = 403/694 (58%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L+K+        T   DLLF+ P  + DR     +  +    +  
Sbjct: 8   PVTQLKGVGNALAEKLAKL------GITSLQDLLFHLPHRYEDRTRVIPMGSLRIGDVAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + +     + +RR  ++ L D +G + + FF+      KN   EG ++   G+++ 
Sbjct: 62  VEGEVMKADLI-MGRRRSLQVTLRDNSGFLVMRFFHFNAAQ-KNQLSEGARVRCFGEVRP 119

Query: 132 LKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            +      HP Y              +  VY L  G+     + +  +AL  L   P  +
Sbjct: 120 GRAGYEFYHPEYQINPPPMPAEGDATLTPVYPLTEGIQQPRVRSLCQQALGYLDRFPIRD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLM 243
           W+  +LL +   P I EA  ++H+P  +       E   PA++RL  +ELLA Q++LL +
Sbjct: 180 WLPGNLLAEYQLPGITEAVQLVHSPPASAPVNLLMEGRHPAQQRLVMEELLAHQLSLLQV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+Q +    +P+   G + ++ L ++PF+ T +Q   + DI QD+SQ   MLR++QGDVG
Sbjct: 240 REQIQAREALPLLPTGDLPERFLDSLPFALTGAQRHVLADIRQDLSQPLPMLRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+ AG Q  +MAP  ILA+QH++  + + +   I +  ++G +    
Sbjct: 300 SGKTVVAALAALQAIGAGAQVALMAPTEILAEQHFQNFRAWLEPLGIRLAWLSGKVKGKT 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R + LE +  G A ++IGTHALFQD +++++L LVIVDEQHRFGV QRL L +K      
Sbjct: 360 RTETLEAVQSGDAAVVIGTHALFQDDVRFHRLALVIVDEQHRFGVHQRLALREKGVGGSL 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           APH L+MTATPIPRTL +++  D+D S I E P GRKPI+T++IP +R ++VIER++   
Sbjct: 420 APHQLIMTATPIPRTLAMSAYADLDTSVIDELPPGRKPIETIVIPDSRREDVIERVRGAC 479

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            EG++AYW+C  IEE +    ++       L E      + ++HGR+   +K +VM+ FK
Sbjct: 480 REGRQAYWVCTLIEESEALQCQAAEVTAQELAERLPDLKVGLVHGRLKAQEKAAVMEQFK 539

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   LL+ATTVIEVG+DV +AS+IIIEN E  GLAQLHQLRGRVGRGE+ S C+L+YHP
Sbjct: 540 VGELDLLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGEQASFCVLMYHP 599

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS N   RL  L++++DGF IAE+DL+ R  GE+LG +Q+GM +F +A  E     +E 
Sbjct: 600 PLSANGKARLQALRDSQDGFFIAEKDLEIRGPGEVLGTRQTGMMQFRLADFERDKGWIEP 659

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            RK A  ++   P++  VR    R L    +Y +
Sbjct: 660 VRKMAPGLMVH-PEI--VRALVRRWLGDRARYGD 690


>gi|78043676|ref|YP_360300.1| ATP-dependent DNA helicase RecG [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995791|gb|ABB14690.1| ATP-dependent DNA helicase RecG [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 677

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 245/689 (35%), Positives = 397/689 (57%), Gaps = 21/689 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+   +GVG + +  L K+            DL++Y P  + DR    KISE+  + + T
Sbjct: 4   PVQYLKGVGPQKAKLLQKLK------IETVKDLIYYFPKRYEDRSSLKKISELINDEVTT 57

Query: 72  ITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           + G + +      + K +  K+ +NDG+G     FF +    LKNVF +G+K+   GK++
Sbjct: 58  VLGTVVEVKEVIPRDKLKILKVGINDGSGTAYGCFFNQS--YLKNVFIKGKKVYFYGKVE 115

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLPEWI 189
           K      +    Y F + + ++   +  +Y L   LS   F+++I  AL   L  + E +
Sbjct: 116 KRFFETNIYVYEYEFWDKELLHTNRLVPIYPLTENLSPKTFRQLIKNALDKYLEEITEPL 175

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            +++L+K S P + +A   +H P  +   E +  AR R+ ++E L   +A+ L ++ ++K
Sbjct: 176 PEEILRKYSLPDLKQALMNLHFPESS---EQSELARRRMVFEEFLLFFLAIGLYKENYQK 232

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           + GI I   G++ +K + ++PF  T +QE   ++I +D++ K  M R++QGDVGSGKT++
Sbjct: 233 KPGIVIAGSGELEKKFIDSLPFKLTSAQEKVWREIKEDLAAKKPMNRLVQGDVGSGKTIL 292

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A +A+  AVEAG Q  +MAP  ILA+QHY  + +      I V +++G++    +    +
Sbjct: 293 AALALVKAVEAGFQGALMAPTEILAEQHYLNLSRLFAPLGIKVVLLSGSLSSGKKEAVYK 352

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            I +G A +IIGTHAL Q+++ +  L L ++DEQHRFGV+QR  L +K    + L+M+AT
Sbjct: 353 AIKNGYADVIIGTHALIQEAVIFDNLGLAVIDEQHRFGVEQRSSLVEKGLYVNQLVMSAT 412

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL LT  GD+D+S +   PAGRKPIKT  +      +    L   ++EG++ Y +C
Sbjct: 413 PIPRTLALTLYGDLDVSIVDALPAGRKPIKTYWLSSQDKGKAYAFLLKQVAEGRQGYVVC 472

Query: 490 PQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P +EE ++    +V + +  L + F      ++HGR+   +KE VM++F+    ++L++T
Sbjct: 473 PLVEESEKLQVEAVTKLYEKLSKKFPQFKWGLMHGRLKPAEKEEVMENFRKNNIQILVST 532

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +A++IIIE+A  FGLAQLHQ+RGRVGRGE  S C LL +P  ++    R+
Sbjct: 533 TVIEVGVDVPNANVIIIEDAWRFGLAQLHQIRGRVGRGEHQSYCFLLGNPR-NQEGIVRM 591

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            +++   DGF IAEEDLK R  GE+ G +QSG  +F +A      ++L +A+K+A  I  
Sbjct: 592 KIMEKYNDGFKIAEEDLKLRGPGELSGTRQSGAWEFKLADIVRDQAILFLAKKEADEI-- 649

Query: 669 QDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
               LT+       I L L +Y +    +
Sbjct: 650 ----LTNKENHRALITLALEKYGDKINML 674


>gi|270265246|ref|ZP_06193508.1| hypothetical protein SOD_l00960 [Serratia odorifera 4Rx13]
 gi|270040880|gb|EFA13982.1| hypothetical protein SOD_l00960 [Serratia odorifera 4Rx13]
          Length = 693

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 262/707 (37%), Positives = 396/707 (56%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL+T  GVG   +  L+KI            DLL + P  + DR     
Sbjct: 1   MKGRLLDAV--PLTTLSGVGASQAGKLAKI------GLETIQDLLLHLPLRYEDRTRLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+ G + + S     +RR     ++DGTG +T+ FF     M KN    G
Sbjct: 53  INDLLPGIFATVEGEVLR-SDISFGRRRMLTCQISDGTGLLTMRFFNFNAAM-KNSLAAG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++T  G+IK+  +   ++HP Y     +S+      +  VY    G+     +K+  +A
Sbjct: 111 RRVTAYGEIKRGNHGAEIIHPEYRIQGESSEVELQESLTPVYPTTEGIRQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L  L    + E +  +L       S+ +A + +H P      +D E    PA++RL  +E
Sbjct: 171 LELLDTCAIAELLPPEL--SGGLMSLPQALHTLHRPPPDIQLEDLEQGKHPAQKRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +    +P+  + ++ Q+ L  +PFSPT +QE  + DI  DM +  
Sbjct: 229 LLAHNLSMLAVRAGAQSYQALPLMPDDRLKQQFLAELPFSPTGAQERVVADIEADMQKGF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRQWFEPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA G+  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARIAQQEAIASGKVSMVVGTHAIFQEQVQFSGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K        H L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHAHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R+K     EG++AYW+C  IEE +    ++    +  L        +A++HGRM 
Sbjct: 469 ADIIQRVKSACMEEGRQAYWVCTLIEESELLEAQAAEATWEELKTALPELKVALVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 AQEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  Q P+    R    R L    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRVARHIHQQYPE--HARALIERWLPEKARYSNA 693


>gi|307295468|ref|ZP_07575304.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306878507|gb|EFN09727.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 687

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 295/704 (41%), Positives = 432/704 (61%), Gaps = 21/704 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLF  +   +GVG   +  L ++         R +D+ F+ P SFIDR     
Sbjct: 1   MRPDILNPLFTEIEALKGVGPALAKPLERL------GLARAVDVAFHLPVSFIDRRM--- 51

Query: 61  ISEISEERIVTITGYISQHSSFQLQK--RRPYKILLNDGTG-EITLLFFYRKTEMLKNVF 117
           + E+       + G     + ++     R P++++  D  G  + L++F R +   + + 
Sbjct: 52  VDELILSDSGRVIGIQLTPTDYRASGSARAPFRVIAQDRHGNSVALVYFGRNSAWPRKLL 111

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G    V+GK++   + + +VHP Y+    +    P  E VY L  GL+ +  + ++ +
Sbjct: 112 PLGEPKFVSGKLEAYGDNLQIVHPDYVLPPEEAATIPAREPVYGLSEGLTNNRLRDLVAQ 171

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           +LSR  VLPEWIE  LL +K +P+  EA   IH             ARERLAYDE+ AGQ
Sbjct: 172 SLSRASVLPEWIEPSLLARKGWPAWREALTRIHADPSDA------QARERLAYDEIFAGQ 225

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL+L+R+  +K  GIPI  +G++   +   +PF+PT +Q  A  +I  DM+Q   MLR+
Sbjct: 226 LALMLVRQSSRKRRGIPIAGDGRLRAML--QLPFAPTGAQRRAFGEIEGDMAQPVPMLRL 283

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL+A+   VEAG Q  ++AP  ILA+QHYE ++K      + + I+TG
Sbjct: 284 LQGDVGSGKTLVALMALLNTVEAGAQGALLAPTEILARQHYETLRKMASGLPVTIAILTG 343

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 R   L  +A G   I++GTHA+FQ++++Y  L L ++DEQHRFGV QR+ LT K
Sbjct: 344 REKGKTRESTLMGLADGSIDILVGTHAIFQEAVRYKNLALAVIDEQHRFGVAQRMMLTSK 403

Query: 418 ATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           A   PH+L+MTATPIPRTL LT  G++D+S++ E P GR+PI+TV++  NR+DEV+E L 
Sbjct: 404 AERAPHLLVMTATPIPRTLTLTYYGEMDVSRLDEMPPGRQPIQTVVMSANRLDEVVEALA 463

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             +  G +AYW+CP +EE + S+  +   R   L   F   + ++HGRM   +K++ M++
Sbjct: 464 RHVEGGGQAYWVCPLVEESETSDQAAAEARAEMLKMRFGPLVGLVHGRMKGPEKDAAMEA 523

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +   K+L+ATTVIEVG+DV ++++IIIE AE FGLAQLHQLRGRVGRG+  S CILL 
Sbjct: 524 FASARTKILVATTVIEVGVDVPNSNLIIIEGAERFGLAQLHQLRGRVGRGQNHSVCILLR 583

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
              LS+ S  RL++++ T DGF IAEEDL+ R  GEILG +QSG  +  +A PE   +LL
Sbjct: 584 GGALSETSRARLALMRETNDGFRIAEEDLRLRGAGEILGTRQSGEQQLKLATPEHLSALL 643

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           + AR DA  ++ +D  LT  RG++ R  LYL++ + A   +R+G
Sbjct: 644 DSARDDAHLLIDRDGGLTEARGEAARTCLYLFERDAAVGLLRSG 687


>gi|296133598|ref|YP_003640845.1| ATP-dependent DNA helicase RecG [Thermincola sp. JR]
 gi|296032176|gb|ADG82944.1| ATP-dependent DNA helicase RecG [Thermincola potens JR]
          Length = 808

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 249/695 (35%), Positives = 384/695 (55%), Gaps = 19/695 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             L   + +G K    L+K+            DL +Y P  + DR        ++     
Sbjct: 126 QSLQYLKNIGPKRVRLLNKL------GIYSITDLFYYIPRRYEDRSQLKPFYMLAHGETE 179

Query: 71  TITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           T +G I      + ++     K  L D TG    ++F +    +K     G+++ V+GK+
Sbjct: 180 TASGIIVGLQEIKPRRGLTITKAALRDATGIGYAVWFNQ--PYVKKQLIPGKELIVSGKV 237

Query: 130 KKLKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPE 187
            K   ++ +    +   +  D V+   I  VYS+  GL   +F+ I+   +      L E
Sbjct: 238 DKKFGQVQITVADFEVVDDSDNVHVGRIVPVYSVTEGLPQRVFRTIMKNLIDSFGDRLAE 297

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQ 246
            +   + ++   PSI EA   IH P      E     R RLA+DELL  Q+ L  M+  Q
Sbjct: 298 PLPDSIRRRYDLPSINEALRNIHFPEDWNCIEEA---RRRLAFDELLVLQLGLASMKISQ 354

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            +K  GI     G + ++ + N+PF  TK+Q+  ++ I +DM     M R+LQGDVGSGK
Sbjct: 355 LRKVRGIAHKKHGPLMKRFMDNLPFPLTKAQQRVLESIYRDMESPKPMNRLLQGDVGSGK 414

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+V+  A+   VE+G Q V+MAP  ILA+QHY  +++      + V ++TG++    +  
Sbjct: 415 TIVSAAALIKTVESGYQGVLMAPTEILAEQHYLGLRELFAPLGVKVSLLTGSISNKEKEA 474

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            L+ I+ G+  I+IGTHA+ QD + + KL L I DEQHRFGV+QR +L QK   P VL+M
Sbjct: 475 VLQDISQGRTDIVIGTHAVIQDEVVFQKLGLAITDEQHRFGVKQRARLQQKGHYPDVLVM 534

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL +T  GD+D+S I E P GR+P+KT  +  N+   + E ++  + EG++AY
Sbjct: 535 TATPIPRTLAMTVYGDLDVSVIDELPPGRQPVKTFWVTENKRQRMYEFIRQQVKEGRQAY 594

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           ++CP +EE  + +  + VE  + L +       I ++HGRM   +KE VM +F++G   +
Sbjct: 595 FVCPLVEESDKLDVEAAVETADRLAQVVFPDLRIGLLHGRMKADEKEQVMKAFRDGKIDI 654

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+ATTVIEVG++V +A++++IE+AE FGLAQLHQLRGRVGRG   S CILL  P  +   
Sbjct: 655 LVATTVIEVGVNVPNATVMVIEDAERFGLAQLHQLRGRVGRGSHQSYCILLADPK-TDEG 713

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ +++ + DGF IAEEDLK R  G+  G +QSG+P   IA       +LE+AR  + 
Sbjct: 714 KARMQIMQASTDGFKIAEEDLKLRGPGDFFGTRQSGLPDLKIADIVRDVKILEMARVTSF 773

Query: 665 HILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
            I+ +DP L+    + ++  L + ++   + FI  
Sbjct: 774 EIIEKDPALSLPEHRELK-KLMVEKFKNKYHFINI 807


>gi|119386789|ref|YP_917844.1| DEAD/DEAH box helicase domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119377384|gb|ABL72148.1| DEAD/DEAH box helicase domain protein [Paracoccus denitrificans
           PD1222]
          Length = 697

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 288/701 (41%), Positives = 425/701 (60%), Gaps = 10/701 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA + T  GVG + +   +++         R  DL+   P S I R    ++
Sbjct: 5   RPPALFPLFAGVETLPGVGPRAAEAFAQM------GVMRLRDLVLTLPHSGIRRRRIARL 58

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           +E     IVT+   + +HS    + R P+++  +DG+ ++ L+FF+ + + +++    G 
Sbjct: 59  AEADPPEIVTVAITVQRHSPPTAKGR-PWRVHCSDGSADLLLVFFHPRKDWIESQLPAGA 117

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+GKI+       MVHP +I     D   P  E VY L   L+  + +K +  A++R
Sbjct: 118 RRLVSGKIELFDGMAQMVHPDHIGAEGSDPP-PDFEPVYPLSGRLTQGVVQKAVQAAMTR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP   EWI+  L+ ++ +P    A    H P        T PAR RLAYDEL A Q+ L 
Sbjct: 177 LPQAAEWIDPALVAREGWPDWQTALVRAHAPEGPAGLSPTDPARARLAYDELFAHQMTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L+R+  +++ G+    +G +  K+L  +P+ PT +Q  A+ +I  DM+   RM R+LQGD
Sbjct: 237 LLRRDRRRQAGLATQGDGHLRDKVLAGLPWPPTGAQRRAVDEIAADMAAPRRMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA  A+  AVEAGGQ V+MAP  ILA+QH+  ++   +   I +E +TG    
Sbjct: 297 VGAGKTLVAFFALLVAVEAGGQGVLMAPTEILARQHFRALEPLARLAGIRLEALTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL--TQKAT 419
             R   L  +A G+  I++GTHA+ Q S++++ L L IVDEQHRFGV QR++L       
Sbjct: 357 DARANILTDLAEGRIVILVGTHAVIQKSVEFHDLRLAIVDEQHRFGVNQRMELGAKGGHQ 416

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P +L+MTATPIPR+L L   GD+D+S + EKPAGR+PI+T +I   R+ EV++ L   L
Sbjct: 417 PPDMLVMTATPIPRSLALAQFGDMDLSVLDEKPAGRQPIRTTVISDARMGEVVDHLARAL 476

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G +AYW+CP +EE +  +  +   RF  L   F   + ++HG+M   ++++ M  F  
Sbjct: 477 DGGARAYWVCPLVEESEAVDLTAAEARFQELRARFGDQVRLVHGQMPADERDAAMADFAA 536

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+ATTVIEVG+DV +A+I++IE AE FGLAQLHQLRGRVGRG   SSC+L+YH P
Sbjct: 537 GRAGILVATTVIEVGVDVPEATIMVIERAESFGLAQLHQLRGRVGRGSGASSCLLMYHEP 596

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RL++L+ TEDGF IAEEDL  R  G+++G  QSG+P+F IA  E    L+ +A
Sbjct: 597 LSETGRRRLTILRETEDGFRIAEEDLVMRGAGDVIGTAQSGLPRFRIADLERQAGLMALA 656

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           RKDA+  L +DP + S RGQ++R+LL+L + + A + I AG
Sbjct: 657 RKDAQSFLERDPAMESERGQAVRLLLWLMEQDRAIRLITAG 697


>gi|308047829|ref|YP_003911395.1| ATP-dependent DNA helicase RecG [Ferrimonas balearica DSM 9799]
 gi|307630019|gb|ADN74321.1| ATP-dependent DNA helicase RecG [Ferrimonas balearica DSM 9799]
          Length = 698

 Score =  608 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 256/683 (37%), Positives = 390/683 (57%), Gaps = 24/683 (3%)

Query: 3   PSFLNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           P+ ++ L   P++T +GVG K +  L ++            DLL + P  + DR     +
Sbjct: 6   PASVDKLNTLPVTTLKGVGDKLAEKLLRL------GVRSVGDLLLHLPLRYEDRTRIWPV 59

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + ++  +  T+ G +   ++    +RR   + L DG+G I+L FF       K+ F  G 
Sbjct: 60  AALTPGQNATVEGEVLS-ANVSYGRRRRMTVQLADGSGTISLHFFNFALAQ-KDSFVVGA 117

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQ--DVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           ++   G+ +     I MVHP Y         +    +  VY    GL   + +K+  EAL
Sbjct: 118 RVRAFGEARAGMRHIEMVHPEYHVLGEHTHPLLEESLTPVYPTTEGLKQAILRKLTDEAL 177

Query: 180 S--RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDEL 233
           +  R   LPE + + L   +    +++A + IH P              PA++RL  +EL
Sbjct: 178 TLLRHHPLPELLPEGLYPHQ--LPLSDALHFIHRPPPDASLTQLESGEHPAQQRLVMEEL 235

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA  +++L +R        +P+  +  + Q+ L  +PF PT +Q+  + +I  D++Q   
Sbjct: 236 LAQNLSMLKLRADSGSHKALPLQPDTNLLQRFLAALPFQPTGAQQRVVNEIAADLNQSEP 295

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH +    + +   + V 
Sbjct: 296 MMRLVQGDVGSGKTLVAALAALHAISQGYQVALMAPTELLAEQHAQAFANWFEPLGLPVA 355

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    R  ALERIA G+A +++GTHA+FQ  + ++ L LVIVDEQHRFGV QRL 
Sbjct: 356 WLAGKLKGKAREAALERIASGEARMVVGTHAIFQSQVAFHHLALVIVDEQHRFGVHQRLT 415

Query: 414 LTQ----KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L +        PH L+MTATPIPRTL +T+  D+D+S I E P GR PI TV IP +R D
Sbjct: 416 LREKGLKDGCYPHQLIMTATPIPRTLAMTAYADLDVSVIDELPPGRTPITTVAIPDSRRD 475

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528
           +V+ER++   S G++AYW+C  IEE +    ++  +    L E     +I ++HGRM   
Sbjct: 476 DVVERVRQACSNGRQAYWVCTLIEESEVLQCQAAEDTATELAERLPELNIGLVHGRMKAD 535

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +K+ VM++FK     LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  
Sbjct: 536 EKQQVMNAFKANELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAV 595

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            S C+LL+HPPLSK + +RL VL+ + DGF+IA+ DL+ R  GE+LG +Q+G+    IA 
Sbjct: 596 ASHCVLLFHPPLSKTAQSRLGVLRESNDGFVIAQRDLEIRGPGEVLGTRQTGLADLKIAD 655

Query: 649 PELHDSLLEIARKDAKHILTQDP 671
                +L+   ++ A+H++ + P
Sbjct: 656 LVRDAALIPQVQRLAQHLMDRYP 678


>gi|294011407|ref|YP_003544867.1| ATP-dependent DNA helicase RecG [Sphingobium japonicum UT26S]
 gi|292674737|dbj|BAI96255.1| ATP-dependent DNA helicase RecG [Sphingobium japonicum UT26S]
          Length = 691

 Score =  608 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 290/704 (41%), Positives = 433/704 (61%), Gaps = 21/704 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLF  +   +GVG   +  L ++         R +D+ F+ P SF+DR     
Sbjct: 5   MRPDILNPLFTEIEALKGVGPTLAKPLERL------GLARAVDVAFHLPVSFVDRRM--- 55

Query: 61  ISEISEERIVTITGYISQHSSFQLQK--RRPYKILLNDGTG-EITLLFFYRKTEMLKNVF 117
           + E+       + G     + ++     R P++++  D  G  + L++F R +   + + 
Sbjct: 56  VDELMLGDSGRVIGITLTPTDYRASGSARAPFRVIAQDRHGNSVALVYFGRNSAWPRKLL 115

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G    V+GK++   + + +VHP ++    +    P  E VY L  GL+ +  + ++ +
Sbjct: 116 PLGEPKFVSGKLEAYGDNLQIVHPDHVLPPEEAATIPAREPVYGLSEGLTNNRLRDLVAQ 175

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           AL+R P LPEWIE  LL +K +P   EA   IH      D    + ARERLAYDE+ AGQ
Sbjct: 176 ALARAPELPEWIEPSLLARKGWPGWREALQRIHA--DPAD----ALARERLAYDEIFAGQ 229

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL+L+R+  ++  G+P+  +G++   +   +PF+PT +Q  A  +I  DM+Q   MLR+
Sbjct: 230 LALMLVRQSSRRRRGVPVAGDGRLRAML--KLPFAPTGAQSRAFMEIEGDMAQPVPMLRL 287

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL+A+   VEAG Q  ++AP  ILA+QHYE ++      ++ + I+TG
Sbjct: 288 LQGDVGSGKTLVALMALLNTVEAGAQGALLAPTEILARQHYETLRGMASGLRVNIAILTG 347

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 R   L  +A G   I++GTHA+FQD+++Y  L L ++DEQHRFGV QR+ L  K
Sbjct: 348 REKGKARESTLMGLADGSIDILVGTHAIFQDAVRYKNLALAVIDEQHRFGVAQRMMLAAK 407

Query: 418 ATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           A   PH+L+MTATPIPRTL LT  G++D+S++ E P GR+PI+TV++   R+DEV+E L 
Sbjct: 408 AERAPHLLVMTATPIPRTLTLTYYGEMDVSRLDEMPPGRQPIQTVVMSSGRLDEVVEALA 467

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             +  G +AYW+CP +EE + S+  +   R  +L   F   +AI+HGRM   +K++ M+S
Sbjct: 468 RHVEGGGQAYWVCPLVEESENSDLAAAEARAETLRTRFGERVAIVHGRMKGPEKDAAMES 527

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +   K+L+ATTVIEVG+DV ++++IIIE A+ FGLAQLHQLRGRVGRG+  S CILL 
Sbjct: 528 FASARAKILVATTVIEVGVDVPNSNLIIIEGADRFGLAQLHQLRGRVGRGQNQSVCILLR 587

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
              LS+ +  RL++++ T DGF IAEEDL+ R  GEILG +QSG  +  +A PE   +LL
Sbjct: 588 GNALSETARARLALMRETNDGFRIAEEDLRLRGAGEILGTRQSGEQQLKLATPEHLSALL 647

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +  R DA  ++ +D  L+  RGQ+ RI LYL++ + A   +R+G
Sbjct: 648 DPVRDDAHLLIDRDGGLSEARGQAARICLYLFERDAAVGLLRSG 691


>gi|119472958|ref|ZP_01614814.1| ATP-dependent DNA helicase recG [Alteromonadales bacterium TW-7]
 gi|119444627|gb|EAW25937.1| ATP-dependent DNA helicase recG [Alteromonadales bacterium TW-7]
          Length = 693

 Score =  608 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/708 (37%), Positives = 395/708 (55%), Gaps = 30/708 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    LN    P++  +GVG K +  L K+            D+LF+ P  + DR     
Sbjct: 1   MSKPSLN--QYPITELKGVGPKMAERLLKL------GIKNVQDMLFHLPLRYEDRTRIYS 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+E+S    V+I   I + S     KRR   + +ND TG +TL FF       KN    G
Sbjct: 53  INELSFHSHVSIEATI-ETSQITFGKRRMLVVQVNDNTGRLTLRFFNFSAAQ-KNALSPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + I   G++++ +    M HP Y   +  S+      +  VY    GL     + +  +A
Sbjct: 111 KIIRCFGEVRRGRAGFEMSHPEYSLSDTPSEQPTASTLTPVYPTTDGLKQLSIRALSEQA 170

Query: 179 LSRLPVLPEWIEKDLLQKKSFPS---IAEAFNIIHNPRKAKDF----EWTSPARERLAYD 231
              + +L ++  ++LL  +  PS   +A+A  ++H P    D     + T PA++RL ++
Sbjct: 171 ---VELLNKYSVEELLPVQWQPSQLALADALLLLHRPPSNIDVNELEQGTHPAQQRLVFE 227

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           ELLA  ++LL +RKQ ++   + ++   K+  + L  +PF+PT +Q   + +I  D++  
Sbjct: 228 ELLAQNLSLLKVRKQGQQVKAVSLSSTNKLEPQFLSQLPFAPTSAQNRVVSEIKADLASP 287

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M+R++QGDVGSGKTLVA ++   A+  G Q  +MAP  ILA+QH      + +   I 
Sbjct: 288 YPMMRLVQGDVGSGKTLVAALSALTAIAQGFQVALMAPTEILAEQHGISFTSWFKQLGID 347

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V  + G      R   LE+IA G++ +I+GTHALFQD +++  L+L+I+DEQHRFGV QR
Sbjct: 348 VAWLGGKTKGKERTATLEKIASGESQMIVGTHALFQDEVKFNNLVLIIIDEQHRFGVHQR 407

Query: 412 LKLTQ----KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           L L +        PH L+MTATPIPRTL +T+  D+++S I E P GR PI TV +P  R
Sbjct: 408 LTLREKGQFNGCYPHQLVMTATPIPRTLAMTAYADLEVSIIDELPPGRTPITTVALPDTR 467

Query: 468 IDEVIERLKVVLSEG-KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            D++I R+K   +E  ++ YW+C  I+E +    ++  +    L E     SI ++HGRM
Sbjct: 468 RDDIITRVKSACNEQERQVYWVCTLIDESEALQCQAAEDSAVQLKEALPDLSIGLVHGRM 527

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +K+S+MD FK G   +L+ATTVIEVG+DV +AS+IIIEN E  GLAQLHQLRGRVGR
Sbjct: 528 KPAEKQSIMDDFKKGLIHVLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGR 587

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
           G   S C+LLYH PLS  +  RL VL+++ DGF+IAE DL+ R  GE+LG KQ+G+ +F 
Sbjct: 588 GNIASHCVLLYHAPLSHTAQKRLGVLRDSNDGFVIAERDLEIRGPGEVLGTKQTGLAEFK 647

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           IA        L   R  A+ +L Q P       Q  R L     Y +A
Sbjct: 648 IADLTRDKQTLNQVRPIAQQMLNQYPQYVDPLIQ--RWLGNKTNYAQA 693


>gi|152998385|ref|YP_001343220.1| ATP-dependent DNA helicase RecG [Marinomonas sp. MWYL1]
 gi|150839309|gb|ABR73285.1| ATP-dependent DNA helicase RecG [Marinomonas sp. MWYL1]
          Length = 693

 Score =  608 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 257/686 (37%), Positives = 400/686 (58%), Gaps = 22/686 (3%)

Query: 5   FLNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
            +N L    +   +GVG   +  L+K+      +     DLLF+ P  + DR     I  
Sbjct: 1   MINGLDTQDVRELKGVGDAMAEKLAKL------HLNTVQDLLFHLPIRYQDRTRVVPIGM 54

Query: 64  ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           +       I G ++  +  ++ KRR     + D TG + L FF+      K     G+++
Sbjct: 55  LRFGDEAVIEGQVTG-AEIKMGKRRSLLCRIKDHTGTLCLRFFHFSAAQ-KKQLESGKRV 112

Query: 124 TVTGKIKKLKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
              G+I++      + HP Y     +        +  +Y L  GL+    +++  +AL R
Sbjct: 113 RCFGEIRRGSTGFEIYHPEYKVIGEDETQEETAQLTPIYPLTDGLTQTKIRQLCEQALER 172

Query: 182 LPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLA 235
           L    L EW+  ++  + S P +++A + +H+P +  + E     T PA+ RL+++EL+A
Sbjct: 173 LTPYNLQEWLPDEIRSQFSLPPLSDAIHFLHHPSREANLELLRSGTHPAQYRLSFEELMA 232

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q++L+  R + K++  I +   G+++Q++L+ +PFSPT +Q+   ++IL D++  + ML
Sbjct: 233 HQLSLIGKRMKAKQDAAIKVQAAGELSQRLLQQLPFSPTNAQQRVFQEILNDLATGHPML 292

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKTLVA +A A+ V+AG Q  IMAP  ILA+QHY    ++ +   + V  +
Sbjct: 293 RLVQGDVGSGKTLVAALAAASVVQAGYQVAIMAPTEILAEQHYINFTQWFEPLGLKVAWM 352

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
            G +    R K L  IA G A II+GTHALFQD++++ +L L I+DEQHRFGV QR+ L 
Sbjct: 353 IGKLKGKTREKELADIASGAAQIIVGTHALFQDTVEFDRLALAIIDEQHRFGVHQRMALR 412

Query: 416 Q----KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           +        PH L+MTATPIPRTL +++  D+D S I E P GR P+ T+++   R  EV
Sbjct: 413 EKGMKHGFQPHQLIMTATPIPRTLAMSAYADLDCSIIDELPPGRTPVNTIVVSDQRRQEV 472

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
           I+R+K    EGK+AYW+C  IEE +    ++  +    L E   + SI ++HGR+   +K
Sbjct: 473 IDRVKSACEEGKQAYWVCTLIEESEALQCQAAEDTAILLQEQLGNLSIGLVHGRLKAQEK 532

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             +M  FK G  +LL+ATTVIEVG+DV ++S+++IEN E  GLAQLHQLRGRVGRG+  S
Sbjct: 533 ADIMARFKAGEIQLLVATTVIEVGVDVPNSSLMVIENPERLGLAQLHQLRGRVGRGQTAS 592

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+LLY  PL +    RLS ++ T DGF IAE+DL+ R  GE+LG +Q+G+ +F +A  +
Sbjct: 593 HCVLLYKAPLGQQGKERLSTMRETSDGFKIAEKDLELRGPGELLGTRQTGLWEFKVADLQ 652

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSV 676
              +LL+  +K A  + ++ PD  S 
Sbjct: 653 RDKNLLDDVQKAAALLHSRYPDRVSP 678


>gi|312882900|ref|ZP_07742632.1| ATP-dependent DNA helicase RecG [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369419|gb|EFP96939.1| ATP-dependent DNA helicase RecG [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 692

 Score =  608 bits (1568), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/696 (38%), Positives = 403/696 (57%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS+  GVG K +  L+KI            DLLF+ PS + DR     I+++       
Sbjct: 9   PLSSLTGVGAKVAEKLTKI------GLNSVQDLLFHLPSRYEDRTRVYPIAQLHTGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +     +R+   + ++DG G +TL FF   T  +KN F  G+ +   G+IK+
Sbjct: 63  IQGQVMA-TDVSFGRRKMLTVKVSDGNGTLTLRFFNF-TAAMKNNFTAGKTVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y FH S++       +  VY    GL     + +  +AL  L    + E
Sbjct: 121 GNYGLEIVHPDYKFHVSENKPAAEATLTPVYPTTEGLRQITLRNLTEQALELLAKSAVKE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            +   L   ++  ++ EA + IH P  + D E       PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPAGLYDYQT--TLGEALHTIHRPPPSIDLEQFDQGQHPAQLRLIIEELLAQNLSMLAV 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q ++++   + V   +  K+L  +PFSPTK+Q+  ++++ QD+ + + M+R++QGDVG
Sbjct: 239 RSQGQQDLAQALPVSQNLKPKLLAQLPFSPTKAQDRVVREVEQDLQKNHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +    
Sbjct: 299 SGKTLVAALAGLGALEKGHQVALMAPTELLAEQHALNFTQWLEPLGIQVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           ++ ALE+IA+G+  +++GTHALFQD + +  L LVI+DEQHRFGV QRL+L +K      
Sbjct: 359 KQTALEKIANGEMQMVVGTHALFQDQVHFSHLALVIIDEQHRFGVHQRLELREKGQHDNL 418

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D++I       
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSIIDELPPGRTPIQTVAIPDTKRDDIIARVQNAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           + EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 479 MHEGKQAYWVCTLIDESEVLEAQAAADTSEDLQRKLPELKIGLVHGRMKPAEKQAVMQDF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG+  S C+LLYH
Sbjct: 539 KDNKLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGKVASHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL+VL+++ DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 SPLSKTAQKRLAVLRDSNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQGLIP 658

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A+HI    PD  + +    R L     Y++A
Sbjct: 659 EVQKIARHIHENYPD--NAKSIIERWLGERDIYSKA 692


>gi|292486539|ref|YP_003529405.1| ATP-dependent DNA helicase RecG [Erwinia amylovora CFBP1430]
 gi|292897774|ref|YP_003537143.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
 gi|291197622|emb|CBJ44716.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
 gi|291551952|emb|CBA18989.1| ATP-dependent DNA helicase RecG [Erwinia amylovora CFBP1430]
          Length = 693

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 254/686 (37%), Positives = 380/686 (55%), Gaps = 26/686 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL+T  GVG   +  L+K+            DLL + P  + DR     
Sbjct: 1   MQGRLLDAV--PLNTLSGVGASQATKLAKL------GLVTVQDLLLHLPLRYEDRTQLYA 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +      T+ G +  H      +RR     + DGTG +TL FF     M KN    G
Sbjct: 53  INNLQPGIYATVAGEVL-HCDISFGRRRMLTCQITDGTGTVTLRFFNFNAGM-KNSLAVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++T  G+IK+ +    ++HP Y       V      +  VYS   G+     + +  +A
Sbjct: 111 RRVTAYGEIKRGQRGAEIIHPEYKVQGEHSVTGLQETLTPVYSTTEGVRQATLRNLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L+ L    + E +   L       S+ +A   +H P       D +  T PA+ RL  +E
Sbjct: 171 LTLLDTCAIAELLPPQLR--GGLISLPDALRTLHRPPPDMALADLDSGTHPAQRRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   +P++   +++ ++L  +PF PT +Q+  +++I  D++   
Sbjct: 229 LLAHNLSMLAVRAGAQRYHALPMSPRHQLSDRLLAALPFRPTAAQQRVVREIENDLAHDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +     +  G Q  +MAP  +LA+QH    +++     + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALTALNVIAWGKQVALMAPTELLAEQHANNFRQWFAPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA G+  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGRVSMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEDQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I R+K   S EG++AYW+C  IEE +    ++    +  L       +I ++HGRM 
Sbjct: 469 ADIITRVKDACSSEGRQAYWVCTLIEESELLEAQAAQATWEELQLALPELTIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LLIATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGEIHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFMIAQCDLEIRGPGELLGTRQTGNAEFRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A      +L+   ++ A+HI    P+
Sbjct: 649 ADLLRDQALIPEVQRVARHIHQHYPE 674


>gi|300714630|ref|YP_003739433.1| ATP-dependent DNA helicase RecG [Erwinia billingiae Eb661]
 gi|299060466|emb|CAX57573.1| ATP-dependent DNA helicase RecG [Erwinia billingiae Eb661]
          Length = 693

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 255/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   +  L+K+            DLL + P  + DR     
Sbjct: 1   MTGRLLDAV--PLNSLSGVGASQAGKLAKL------GLVTVQDLLLHLPLRYEDRTQLYA 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+ G + Q S     ++R     ++DG+G +TL FF     M KN    G
Sbjct: 53  INDLLPNIYATVEGEVLQ-SDISFGRKRMLTCQISDGSGILTLRFFNFNAGM-KNSLSPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++T  G++K+ +    ++HP Y              +  VYS   G+     + +  +A
Sbjct: 111 KRVTAYGEVKRGQRGAEIIHPEYRIQGDHSGVELQETLTPVYSTTEGIRQATLRNLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L+ L    + E +  +L   +   S+ +A   +H P       D E    PA+ RL  +E
Sbjct: 171 LALLDTCAIAELLPPEL--SQGMISLKDALRTLHRPPPDMALADLESGKHPAQRRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   + +     ++ K+L  +PFSPT +Q   +++I QD+    
Sbjct: 229 LLAHNLSMLAVRAGAQRYHALSMPARHDLSNKLLAALPFSPTGAQARVVREIEQDLVHDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +     +  G Q  +MAP  +LA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALTALNVIAYGKQVALMAPTELLAEQHANNFRQWFEPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVSMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I R+K     EG++AYW+C  IEE ++   ++    +  L       ++ ++HGRM 
Sbjct: 469 PDIIARVKSACSDEGRQAYWVCTLIEESEQLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LLIATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PSEKQAVMQAFKLGEIHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 SVASHCVLLYKAPLSKTAQKRLQVLRDSNDGFVIAQCDLEIRGPGEMLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI    P  T  +    R L    +Y  A
Sbjct: 649 ADLLRDAAMIPEVQRVARHIHQHYP--TQAQSLIERWLPETQRYTNA 693


>gi|209696308|ref|YP_002264239.1| ATP-dependent DNA helicase RecG [Aliivibrio salmonicida LFI1238]
 gi|208010262|emb|CAQ80594.1| ATP-dependent DNA helicase RecG [Aliivibrio salmonicida LFI1238]
          Length = 693

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 264/697 (37%), Positives = 401/697 (57%), Gaps = 26/697 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            PL++  GVG K +  L+KI            DLLF+ P  + DR     I+ +      
Sbjct: 9   TPLTSLAGVGAKVAEKLAKI------GLVTIQDLLFHLPLRYEDRTKVYPIARVHAGLFA 62

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G +      Q  KR+   + ++DG G ITL FF     M KN F EG+ +   G+IK
Sbjct: 63  AVQGNVMSC-DLQFGKRKMLLVKISDGNGTITLRFFNFNAGM-KNHFSEGKLVHAYGEIK 120

Query: 131 KLKNRIIMVHPHYIFH--NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
           +    + +VHP Y FH  +        +  VY    GL  +  + +  +AL  L    + 
Sbjct: 121 RGGVGLEIVHPDYQFHTPSKPLDIEATLTPVYPATDGLRQNTLRSLTDQALVLLDKAAVT 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLL 242
           E + + L   +   ++ +A +IIH P  + + E       PA++RL  +ELLA  +++L 
Sbjct: 181 ELLPQGLYNNQ--ITLNQALHIIHRPDPSINLEAFDQGKHPAQQRLIIEELLAQNLSMLS 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R + ++E  +P+     + QK+L  +PF+PT +Q+  + +I  D+++ + M+R++QGDV
Sbjct: 239 VRSKGQQENALPLTTRSNLKQKLLAQLPFTPTNTQQRVVAEIEHDLAKPHPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLV+ +A   A+E G Q  +MAP  +LA+QH     K+ ++  I V  + G +   
Sbjct: 299 GSGKTLVSALAAVQAIEHGYQVALMAPTELLAEQHAINFTKWFESMGIPVGWLAGKLTGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KA 418
            + K L RIA G+A +I+GTHALFQ  +Q++ L LVI+DEQHRFGV QRL+L +      
Sbjct: 359 AKEKELTRIASGEAKMIVGTHALFQQHVQFHHLALVIIDEQHRFGVDQRLELREKGLKNG 418

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV +P  R  E+++++K  
Sbjct: 419 AYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAVPDTRRSEIVDKVKTA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L +G++AYW+C  I++ +    ++  +   SL       +I ++HGRM   +K+ +M  
Sbjct: 479 CLEDGRQAYWVCTLIDDSEVLEAQAASDTAESLRLQLPELNIGLVHGRMKSQEKQRIMQE 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKEGKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H PLSK +  RLSVL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+
Sbjct: 599 HAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQHLI 658

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
              ++ A++I    P  ++ +    R L     Y+ A
Sbjct: 659 PEVQRIARYIHDSYP--SNAKAIIQRWLGERDIYSNA 693


>gi|212711591|ref|ZP_03319719.1| hypothetical protein PROVALCAL_02666 [Providencia alcalifaciens DSM
           30120]
 gi|212685693|gb|EEB45221.1| hypothetical protein PROVALCAL_02666 [Providencia alcalifaciens DSM
           30120]
          Length = 693

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 257/708 (36%), Positives = 397/708 (56%), Gaps = 30/708 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    LN +   L++  G+G   S  + KI            DLL + P  + D      
Sbjct: 1   MNRGLLNTI--SLTSLHGIGASQSEKMRKI------GLNTVQDLLLHFPLRYEDHTRLYH 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      TITG + Q       ++R    L++DGTG +TL FF     M KN   EG
Sbjct: 53  IKDLMPGTTATITGEVLQTKVV-FGRKRMMTCLISDGTGNLTLRFFNFSAAM-KNSLAEG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVE 177
           R++T  G++++      ++HP Y     +  N PL   +  VY    G+     +K++ +
Sbjct: 111 RQVTAYGEVRRGNTGPEIIHPEYKVSQ-EAENVPLQENLTPVYPTTEGVRQATLRKVMDQ 169

Query: 178 ALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYD 231
           A++ L    + E + ++    +S  S+ +A  ++HNP      +       PA++RL  +
Sbjct: 170 AIAMLDSSNIQELLPEEF--SRSLISLPDAIRLLHNPPPDVSLDELEKGHHPAQKRLILE 227

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           ELLA  +++L +R   ++    P+   GK+   +L N+PFSPT +Q+  + +I  D+ + 
Sbjct: 228 ELLAHHLSMLAIRAGNERLYAEPLISTGKLKAPLLANLPFSPTNAQKRVVAEIEADLHKN 287

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M+R++QGDVGSGKTLVA +A   A+E G Q  +MAP  ILA+QH    K++ +   I 
Sbjct: 288 APMMRLIQGDVGSGKTLVAALAAICAIENGKQVALMAPTEILAEQHASTFKQWFEPLGIK 347

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V  + G      R++  + IA+G+  ++IGTHA+FQ+ + ++ L LVI+DEQHRFGV QR
Sbjct: 348 VGWLAGKQKGKARQQQQDAIANGEVSMVIGTHAIFQEHVSFHSLGLVIIDEQHRFGVHQR 407

Query: 412 LKLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           L L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R
Sbjct: 408 LALREKGEQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIADSR 467

Query: 468 IDEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
             +++ER++   L EG++AYW+C  I++ +    ++       L        + ++HGRM
Sbjct: 468 RSDIVERVRQACLEEGRQAYWVCTLIDDSEVLEAQAAQATSEELALALPELKVGLVHGRM 527

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +K+S+M +FKN   +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGR
Sbjct: 528 KPTEKQSIMAAFKNNEIQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGR 587

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
           G   S C+LLY  PL+  +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G   F 
Sbjct: 588 GSVASHCVLLYKTPLTHTAKQRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNADFK 647

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           +A       +L   ++ A+HI    P+    +    R L    QY+ A
Sbjct: 648 VADLLRDQYMLPEVQRLARHIQQNYPE--HAQKIIERWLPEREQYSHA 693


>gi|259906721|ref|YP_002647077.1| ATP-dependent DNA helicase RecG [Erwinia pyrifoliae Ep1/96]
 gi|224962343|emb|CAX53798.1| ATP-dependent DNA helicase RecG [Erwinia pyrifoliae Ep1/96]
 gi|283476504|emb|CAY72319.1| ATP-dependent DNA helicase RecG [Erwinia pyrifoliae DSM 12163]
          Length = 693

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 254/686 (37%), Positives = 377/686 (54%), Gaps = 26/686 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL+T  GVG   +  L+K+            DLL + P  + DR     
Sbjct: 1   MQGRLLDAV--PLNTLSGVGASQATKLAKL------GLVTVQDLLLHLPLRYEDRTQLYA 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +      T+ G +  HS     +RR     + DGTG +TL FF     M KN    G
Sbjct: 53  INNLLPGIYATVEGEVL-HSDISFGRRRMLTCQIGDGTGTLTLRFFNFNAGM-KNSLAVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++T  G+IK+ +    ++HP Y       V      +  VYS   G+     + +  +A
Sbjct: 111 RRVTAYGEIKRGQRGAEIIHPEYKVQGEHSVTGLQETLTPVYSTTEGVRQATLRNLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDE 232
           L+ L    + E +   L       S+ +A   +H P            T PA+ RL  +E
Sbjct: 171 LTLLDTCAIAELLPPQL--SGGLISLPDALRTLHRPPPDIALADLNSGTHPAQRRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   +P++   +++ ++L  +PF PT +Q+  +++I  D++   
Sbjct: 229 LLAHNLSMLAVRAGAQRYHALPMSPRHELSDRLLTALPFRPTAAQQRVVREIENDLAHDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +     +  G Q  +MAP  +LA+QH    +++     + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALTALNVIAWGKQVALMAPTELLAEQHANNFRQWFAPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ  +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVSMIVGTHAIFQQQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K        H L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHSHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I R+K    SEG++AYW+C  IEE +    ++    +  L       +I ++HGRM 
Sbjct: 469 ADIITRVKDACGSEGRQAYWVCTLIEESELLEAQAAQATWEELQLALPELTIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LLIATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGEIHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQCDLEIRGPGELLGTRQTGNAEFRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A      +L+   ++ A+HI    P+
Sbjct: 649 ADLLRDQALIPEVQRVARHIHQHYPE 674


>gi|310765944|gb|ADP10894.1| ATP-dependent DNA helicase RecG [Erwinia sp. Ejp617]
          Length = 693

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 256/686 (37%), Positives = 380/686 (55%), Gaps = 26/686 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL+T  GVG   +  L+K+            DLL + P  + DR     
Sbjct: 1   MQGRLLDAV--PLNTLSGVGASQATKLAKL------GLVTVQDLLLHLPLRYEDRTQLYA 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +      T+ G +  HS     +RR     + DGTG +TL FF     M KN    G
Sbjct: 53  INNLLPGIYATVEGEVL-HSDISFGRRRMLTCQIGDGTGTLTLRFFNFNAGM-KNSLAAG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++T  G+IK+ +    ++HP Y       V      +  VYS   G+     + +  +A
Sbjct: 111 RRVTAYGEIKRGQRGAEIIHPEYKVQGEHSVTGLQETLTPVYSTTEGVRQATLRNLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L+ L    + E +   L       S+ +A   +H P       D +  T PA+ RL  +E
Sbjct: 171 LTLLDTCAIAELLPPQL--SGGLISLPDALRTLHRPPPDIALADLDSGTHPAQRRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   +P++   +++ ++L  +PF PT +Q+  +++I  D++   
Sbjct: 229 LLAHNLSMLAVRAGAQRYHALPMSPRHELSDRLLAALPFRPTAAQQRVVREIENDLAHDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +     +  G Q  +MAP  +LA+QH    +++     + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALTALNVIAWGKQVALMAPTELLAEQHANNFRQWFAPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ  +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVSMIVGTHAIFQQQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I R+K    SEG++AYW+C  IEE +    ++    +  L       +I ++HGRM 
Sbjct: 469 ADIITRVKDACGSEGRQAYWVCTLIEESELLEAQAAQATWEELQLALPELTIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LLIATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGEIHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQCDLEIRGPGELLGTRQTGNAEFRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A      +L+   ++ A+HI    P+
Sbjct: 649 ADLLRDQALIPEVQRVARHIHQHYPE 674


>gi|229593368|ref|YP_002875487.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens SBW25]
 gi|229365234|emb|CAY53538.1| ATP-dependent DNA helicase [Pseudomonas fluorescens SBW25]
          Length = 691

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 254/694 (36%), Positives = 393/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+K+            D+LF+ P  + DR     I ++   +   
Sbjct: 8   SVTALKGVGEAMAEKLAKV------GLENLQDVLFHLPLRYQDRTRVVPIGQLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +   +   + KRR   + L DGTG ++L F++      K     G ++   G+ + 
Sbjct: 62  VEGTV-SGADVVMGKRRSLVVRLQDGTGGLSLRFYHFSNAQ-KEGLKRGTRVRCYGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y L  GL+    +++ ++ L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPPPVDTTLTPIYPLTEGLTQQRLRQLCMQTLTMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+ ++L +      + +A   +H+P    D +        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  +      +    ++  + L N+ F+PT +Q+    +I  D+SQK  MLR++QGDVG
Sbjct: 240 RESMRSLRAPAMPKATRLPAQYLANLGFAPTGAQQRVGNEIAYDLSQKEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT+VA +A   A+EAG Q  +MAP  ILA+QH+   K++ +   + V  + G +   +
Sbjct: 300 AGKTVVAALAALQALEAGYQVALMAPTEILAEQHFITFKRWLEPLGLEVAWLAGKLKGKN 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----AT 419
           R  ALE+   G A +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L QK      
Sbjct: 360 RASALEQ-IAGGAPMVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRQKGVGGRM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++   R  EVIER++   
Sbjct: 419 NPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERVRGAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K +VM  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCQAAETTYEDLTSALGELKVGLIHGRMKPAEKAAVMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYHP
Sbjct: 539 AGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P+  S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPEHVSPLLN--RWLRHGQQYGQ 690


>gi|294142859|ref|YP_003558837.1| ATP-dependent DNA helicase RecG [Shewanella violacea DSS12]
 gi|293329328|dbj|BAJ04059.1| ATP-dependent DNA helicase RecG [Shewanella violacea DSS12]
          Length = 691

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 257/696 (36%), Positives = 387/696 (55%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV KK +  L+K+            DLLF+ P  + DR     I+ +      T
Sbjct: 8   PVTDLKGVAKKMAERLAKL------GIHTVQDLLFHLPLRYEDRTQIYPIASLYPGSYGT 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG ITL FF       KN    G  I   G+I++
Sbjct: 62  IEAVIQSSQIIQ-GRKRMMTCTVRDDTGYITLRFFNFSVAQ-KNCLVNGTSIRAYGEIRR 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
            K++  ++HP Y   +  D       +  VY    GL    + K+  +AL+ L +  L E
Sbjct: 120 GKHQAEIIHPEYKLIHEDDDLVMSDTLTPVYPTTEGLKQASWIKLTDQALAMLDLDGLQE 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L Q  +  ++  A  ++H P          +   PA++RL  +ELLA  +++L +
Sbjct: 180 LLPPQL-QPNNL-TLKAALQLLHRPNNQVSLFDLEQGHHPAQQRLIQEELLAHNLSMLKL 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++  ++  + +   GK+    L+ +PF PT +Q+    +I  D+ + + M+R++QGDVG
Sbjct: 238 RQRSNRDHAVSLTATGKLLNPFLQALPFKPTGAQQRVGVEICSDLEKSSPMMRLVQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA  A   A+E G Q  +MAP  +LA+QH E    + +   + V  + G +    
Sbjct: 298 SGKTLVAAFAALQAIENGYQVAMMAPTELLAEQHAENFALWFEPLGLKVGRLAGKIKGKA 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R ++L+ I  G+++++IGTHA+FQD + +  L L+I+DEQHRFGV QRL L +    +  
Sbjct: 358 RAQSLQDIESGESNMVIGTHAIFQDQVVFNNLALIIIDEQHRFGVHQRLGLREKGINQGF 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV +   R +EVIER++   
Sbjct: 418 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAVADMRRNEVIERVRHAA 477

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             +G++ YW+C  IEE +    ++  +    L        I +IHGRM   +K+++M  F
Sbjct: 478 THDGRQTYWVCTLIEESEVLECQAAEDTAAELTLALPELKIGLIHGRMKSAEKQAIMAEF 537

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 538 KSGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLMYK 597

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RL VL+++ DGF+IA++DL+ R  GE+LG KQ+G+    IA      +L+ 
Sbjct: 598 APLSPTAIKRLGVLRDSNDGFIIAQKDLEIRGPGEVLGTKQTGIADMKIADLVRDQALIP 657

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A HI+ Q PD  +V G   R L    QY +A
Sbjct: 658 HIQKLAVHIMEQVPD--NVDGIVQRWLGDREQYVQA 691


>gi|89092443|ref|ZP_01165397.1| ATP-dependent DNA helicase RecG [Oceanospirillum sp. MED92]
 gi|89083531|gb|EAR62749.1| ATP-dependent DNA helicase RecG [Oceanospirillum sp. MED92]
          Length = 692

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 251/676 (37%), Positives = 376/676 (55%), Gaps = 22/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+S  +GVG    L L  +            DLLF+ P  + DR     I  +       
Sbjct: 9   PVSELKGVGTALELKLHNL------GIRTIQDLLFHLPLRYQDRTRIVPIGSLRPSDESV 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G + + +     KRR     + DGTG +TL FF+      KN    G +I   G+ + 
Sbjct: 63  IEGEV-KIADISRGKRRSLLCRIQDGTGTLTLRFFHFSAAQ-KNNLKPGTRIRCFGEART 120

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
             + + +VHP Y   +S ++      +  +Y    GL     + +  +AL  L    L E
Sbjct: 121 GASGLEIVHPEYKKVDSDELVPVEECLTPIYPTTEGLHQGRLRALTDQALDYLKRGALQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLM 243
            I + L Q   FP + +A   +H P    D     E   PA+ RLA++EL++  ++LL +
Sbjct: 181 LIPEQLRQGWKFPGLNDAVAYLHRPPVDVDQHLLLEGLHPAQRRLAFEELVSHHLSLLKL 240

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++ +K+    +   G + +  L+ +PF  T +Q+   +++ +D++    MLR++QGDVG
Sbjct: 241 RQKTRKKGAPELPGNGDLVKPFLQQLPFPLTGAQQRVSQEVARDLALPYPMLRLVQGDVG 300

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   +VE+G QA +MAP  ILA+QH+     + +   I V  + G +    
Sbjct: 301 SGKTVVAALAALQSVESGLQAAVMAPTEILAEQHFINFSNWLEPLGIKVAWLAGKLKGKQ 360

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R+  LE I  G+A +++GTHALFQ+ + +  L LV++DEQHRFGV QRL L +K      
Sbjct: 361 RKTQLEAIREGEARVVVGTHALFQEEVVFSDLGLVVIDEQHRFGVHQRLSLREKGRNGEL 420

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S I E P GR P+ TV+I  NR DEVI+R++   
Sbjct: 421 APHQLIMTATPIPRTLTMSAYADLDCSIIDELPPGRTPVNTVVIADNRRDEVIQRVRKAC 480

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +E ++ YW+C  IEE +    ++       L E      I ++HGRM   +K  +M  FK
Sbjct: 481 AEKRQVYWVCTLIEESEALQCQAAEVTAEQLTEALPELRIGLVHGRMKPAEKADIMQKFK 540

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L+Y  
Sbjct: 541 SAELDLLVATTVIEVGVDVPNASVMIIENPERLGLAQLHQLRGRVGRGSVESFCVLMYQA 600

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS     RL+V++ T DGF IAE+DL+ R  GE+LG +Q+G+ +F +A  +    +L+ 
Sbjct: 601 PLSNQGRERLAVMRETTDGFRIAEKDLELRGPGEVLGTRQTGVMQFKMADLQRDSDMLDK 660

Query: 659 ARKDAKHILTQDPDLT 674
            +  A+  L + PD  
Sbjct: 661 VKMLAQQ-LQEWPDFA 675


>gi|312963870|ref|ZP_07778341.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens WH6]
 gi|311281905|gb|EFQ60515.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens WH6]
          Length = 691

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 256/694 (36%), Positives = 392/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG+  +  L+K+            D+LF+ P  + DR     I ++   +   
Sbjct: 8   PVTALKGVGEAMAEKLAKV------GLENLQDVLFHLPLRYQDRTRVVPIGQLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +   +   + +RR   + L DGTG ++L F++      K     G ++   G+ + 
Sbjct: 62  VEGTV-SGADVVMGRRRSLVVRLQDGTGGLSLRFYHFSNAQ-KESLKRGTRVRCYGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y L  GL+    +++ ++ L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPPPVDTTLTPIYPLTEGLTQQRLRQLCLQTLTMLGPQSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+  +L +      + +A   +HNP    D +        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPLELARDYQLAPLDDAIRYLHNPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  +      +    ++  + L N+ F+PT +Q+    +I  D+SQ+  MLR++QGDVG
Sbjct: 240 RESMRSLRAPAMPKATRLPAQYLANLGFAPTGAQQRVGNEIAYDLSQQEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT+VA +A   A+EAG Q  +MAP  ILA+QH+   K++ +   + V  + G +    
Sbjct: 300 AGKTVVAALAALQALEAGYQVALMAPTEILAEQHFITFKRWLEPLGLEVAWLAGKLKGKT 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----AT 419
           R  ALE+   G A +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L QK      
Sbjct: 360 RAAALEQ-IAGGAPMVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRQKGVGGRM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++   R  EVIER++   
Sbjct: 419 NPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERVRGAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    F  L        + +IHGRM   +K +VM  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCQAAETTFEDLTSALGELKVGLIHGRMKPAEKAAVMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYHP
Sbjct: 539 AGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + PD  S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPDHVSPL--LDRWLRHGQQYGQ 690


>gi|312170607|emb|CBX78870.1| ATP-dependent DNA helicase RecG [Erwinia amylovora ATCC BAA-2158]
          Length = 693

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 254/686 (37%), Positives = 380/686 (55%), Gaps = 26/686 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL+T  GVG   +  L+K+            DLL + P  + DR     
Sbjct: 1   MQGRLLDAV--PLNTLSGVGASQATKLAKL------GLVTVQDLLLHLPLRYEDRTQLYA 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +      T+ G +  H      +RR     + DGTG +TL FF     M KN    G
Sbjct: 53  INNLLPGIYATVAGEVL-HCDISFGRRRMLTCQITDGTGTVTLRFFNFNAGM-KNSLAVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++T  G+IK+ +    ++HP Y       V      +  VYS   G+     + +  +A
Sbjct: 111 RRVTAYGEIKRGQRGAEIIHPEYKVQGEHSVTGLQETLTPVYSTTEGVRQATLRNLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L+ L    + E +   L       S+ +A   +H P       D +  T PA+ RL  +E
Sbjct: 171 LTLLDTCAIAELLPPQL--SGGLISLPDALRTLHRPPPDMALADLDSGTHPAQRRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   +P++   +++ ++L  +PF PT +Q+  +++I  D++   
Sbjct: 229 LLAHNLSMLAVRAGAQRYHALPMSPRHQLSDRLLAALPFRPTAAQQRVVREIENDLAHDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +     +  G Q  +MAP  +LA+QH    +++     + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALTALNVIAWGKQVALMAPTELLAEQHANNFRQWFAPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA G+  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGRVSMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I R+K   S EG++AYW+C  IEE +    ++    +  L       +I ++HGRM 
Sbjct: 469 ADIITRVKDACSSEGRQAYWVCTLIEESELLEAQAAQATWEELQLALPELTIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LLIATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGEIHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFMIAQCDLEIRGPGELLGTRQTGNAEFRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A      +L+   ++ A+HI    P+
Sbjct: 649 ADLLRDQALIPEVQRVARHIHQHYPE 674


>gi|109896683|ref|YP_659938.1| ATP-dependent DNA helicase RecG [Pseudoalteromonas atlantica T6c]
 gi|109698964|gb|ABG38884.1| ATP-dependent DNA helicase RecG [Pseudoalteromonas atlantica T6c]
          Length = 691

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 259/703 (36%), Positives = 396/703 (56%), Gaps = 26/703 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            L     P++  +GVG K +  L K+            DLLF+ P  + DR     I+E+
Sbjct: 1   MLGLAQTPVTQLKGVGSKVAEKLVKL------GLQSVQDLLFHLPHRYEDRTRIYPIAEL 54

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
                 ++ G +   S  Q  ++R   + ++DGTG ITL FF+      KN    G +I 
Sbjct: 55  MPHLHTSVEGEVMS-SDVQFGRKRMLIVRISDGTGTITLRFFHFSAAQ-KNSLENGTRIR 112

Query: 125 VTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             G+++  K  + ++HP Y  I  +S       +  VY    G+     + +  +AL+ L
Sbjct: 113 CFGEVRAGKYGLEIMHPEYKTISADSNAQLAESLTPVYPSTEGVKQITLRNLTEQALTLL 172

Query: 183 PV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAG 236
               L E + +D+ Q++    + EA +++H P          E   PA++RLA +ELLA 
Sbjct: 173 DKGGLAELLPEDVYQQQ--VGLIEALHLVHRPPPDVTLALLEEGKHPAQQRLALEELLAH 230

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            +++L +R+Q + + G  I     + +++L ++PF  T +Q+  I DI  DM +   M+R
Sbjct: 231 HLSVLKVRQQSQLQKGFAITPSEPLLKQLLDSLPFDLTGAQQRVINDIQHDMQRPTPMMR 290

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVA +A  +A+ AG Q V+MAP  +LA+QH    + +     I V  + 
Sbjct: 291 LVQGDVGSGKTLVAAMAALSAISAGYQVVMMAPTELLAEQHMNNFQGWFAPLGIEVGWLA 350

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT- 415
           G +    R + LE +A G+  +++GTHA+FQ+++QY  L LVIVDEQHRFGV QRL L  
Sbjct: 351 GKLKGKARNETLENLASGKLQLLVGTHAVFQETVQYQSLALVIVDEQHRFGVHQRLALRE 410

Query: 416 ---QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
              Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR+PI TV++P  R  EV+
Sbjct: 411 KGVQQGAFPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRRPITTVVLPETRRIEVV 470

Query: 473 ERLKVV-LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
           ER+++  + +G++ YW+C  IEE +    ++  E   +L        + ++HGR+   +K
Sbjct: 471 ERVRLATVEQGRQTYWVCTLIEESEVLQSQAAEETAIALATALPELKVGLVHGRLKADEK 530

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + +M  FK+G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S
Sbjct: 531 QRLMQQFKDGEMDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVES 590

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+L+Y  PLSK +  RL+VL+ + DGF IA++DL+ R  GE+LG KQ+G+    IA   
Sbjct: 591 HCVLMYQSPLSKTAAKRLAVLRESHDGFYIAQQDLEIRGPGELLGTKQTGLADLRIADLV 650

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
               L+   +  +  +  Q P   + +    R L +   +  A
Sbjct: 651 RDAELIPQVQTLSVKLWEQHP--ANAQAIINRWLGHKEHFGHA 691


>gi|284008962|emb|CBA75848.1| ATP-dependent DNA helicase RecG [Arsenophonus nasoniae]
          Length = 720

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 262/707 (37%), Positives = 393/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR   L+ +  PL++  GVG   +  L+KI            DLLF+ P  + D+     
Sbjct: 28  MRGKLLDAI--PLTSLNGVGASQAEKLNKI------GLRTIQDLLFHLPLRYQDQTQLYT 79

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++     VT++G I Q       ++R     ++DG+G +TL FF   T M KN    G
Sbjct: 80  INDVQPGSTVTVSGKILQTKII-FGRKRMMICQISDGSGTLTLRFFNFSTAM-KNSLAAG 137

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + I   G+I++      ++HP Y      D       +  +Y +  G+     +K+I +A
Sbjct: 138 KYIVAYGEIRRGNLGPEIIHPEYKIKPDADQIELQDTLTPIYPITEGIRQITLRKLIDQA 197

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDE 232
           L+ L    + E I       +   S+ +A  I+H P          +   PA+ RL ++E
Sbjct: 198 LTLLDSCAISELIPAPF--NQGLISLPQAIKILHRPPPDIPLNILEKGKHPAQRRLIFEE 255

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA Q+++L +R + ++    P+  E K+ Q++L  +P+SPTK+Q+  + +I  D+++ +
Sbjct: 256 LLAHQLSMLTVRSETQQFSAQPLPAEEKLKQQLLTRLPYSPTKAQQRVVSEIEADLAKAS 315

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVAL A   A+  G QA +MAP  +LA+QH    +++ +   I V
Sbjct: 316 PMMRLVQGDVGSGKTLVALFAAIRAIAHGKQAALMAPTELLAEQHANTFRQWLEPLGIQV 375

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             ++G      R    E IA G+  +IIGTHA+FQ  +++  L LVI+DEQHRFGV QRL
Sbjct: 376 GWLSGKQKGKSRLNQQEAIAKGKVAMIIGTHAIFQQQVEFNALALVIIDEQHRFGVHQRL 435

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q    PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 436 ALWEKGQQHGIYPHQLIMTATPIPRTLAMTAYADLDNSIIDELPPGRTPVTTVAIPDTRR 495

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +EVI+R+K     E ++ YW+C  I++ +    ++       L       +I ++HGRM 
Sbjct: 496 NEVIQRVKKACQIEKRQVYWVCTLIDDSEVLEAQAAQATQEELARALPELNIGLVHGRMK 555

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM  F     +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 556 SAEKQKVMADFSANKLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 615

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PL+  +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 616 SIASHCVLLYKTPLTYTTKLRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 675

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A       LL   R  A+H+    P+ T+      R L    QY+ A
Sbjct: 676 ADLMRDQDLLPEIRNAAQHLQQHYPNHTN--ALIERWLPERSQYSNA 720


>gi|77461780|ref|YP_351287.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens Pf0-1]
 gi|77385783|gb|ABA77296.1| ATP-dependent DNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 691

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 261/694 (37%), Positives = 392/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+K+            D+LF+ P  + DR     I  +   +   
Sbjct: 8   SVTALKGVGEAMAEKLAKV------GLENLQDVLFHLPLRYQDRTRVVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +   +   + +RR   + L DGTG ++L F++      K     G +I   G+ + 
Sbjct: 62  VEGTV-SGADVVMGRRRSLVVRLQDGTGGLSLRFYHFSNAQ-KEGLKRGTRIRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             + + + HP Y   N  +       +  VY L  GL+    +++ ++ L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAINGDEPPPVDETLTPVYPLTEGLTQARLRQLCMQTLTLLKPATLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+  +L +      +A+A   +HNP    D +        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPTELARDYQLAPLADAIRYLHNPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  +      +    K+  K L N+ F+PT +Q+    +I  D+SQ   MLR++QGDVG
Sbjct: 240 RESMRSLRAPAMPKATKLPAKYLANLGFNPTGAQQRVGNEIAYDLSQHEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT+VA +A   A+EAG Q  +MAP  ILA+QH+   K++ +   I V  + G +   +
Sbjct: 300 AGKTVVAALAALQALEAGYQVALMAPTEILAEQHFITFKRWLEPLGIDVAWLAGKLKGKN 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----AT 419
           R  ALE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L QK      
Sbjct: 360 RVAALEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRQKGVGGRM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++   R  EVIER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERVRSAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    F  L        + +IHGRM   +K +VM  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCQAAETTFEDLTAALGELKVGLIHGRMKPAEKAAVMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 AGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPTHVSPL--LDRWLRHGQQYGQ 690


>gi|282599850|ref|ZP_05972118.2| ATP-dependent DNA helicase RecG [Providencia rustigianii DSM 4541]
 gi|282567381|gb|EFB72916.1| ATP-dependent DNA helicase RecG [Providencia rustigianii DSM 4541]
          Length = 694

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 255/686 (37%), Positives = 390/686 (56%), Gaps = 26/686 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    LN +   L++  G+G   S  +SKI            DLL + P  + D     +
Sbjct: 2   MNRGLLNTI--SLTSLHGIGASQSEKMSKI------GLNTVQDLLLHFPLRYEDHTRLYQ 53

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      TITG + Q       ++R    L++DGTG +TL FF     M KN   EG
Sbjct: 54  IKDLLPGTTATITGEVLQTKVV-FGRKRMMTCLISDGTGNLTLRFFNFSAAM-KNSLAEG 111

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++T  G+I++      ++HP Y      D       +  VY    G+     +K++ +A
Sbjct: 112 RQVTAYGEIRRGNTGPEIIHPEYKVSQDTDNITLQENLTPVYPTTEGVRQATLRKVMEQA 171

Query: 179 LSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDE 232
           L+ L    + E + ++L   +   S+ +A  ++HNP    +     +   PA++RL  +E
Sbjct: 172 LAMLDNGNIQELLPEEL--NRGLISLPDAIRLLHNPPPDVELGELEKGHHPAQKRLVLEE 229

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P+   GK+    L N+PFSPT +Q   + +I +D+ +  
Sbjct: 230 LLAHHLSMLAIRAGNERLYAEPLVPTGKLKSPFLDNLPFSPTNAQNRVVSEIEKDLHRDT 289

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+E G Q  +MAP  ILA+QH    K++ +   I V
Sbjct: 290 PMMRLIQGDVGSGKTLVAALAAICAIENGKQVALMAPTEILAEQHANTFKQWLEPLGIKV 349

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R++  E IA G+  +++GTHA+FQ+ + ++ L LVI+DEQHRFGV QRL
Sbjct: 350 GWLAGKQKGKARQQQQESIADGEVMMVVGTHAIFQEQVSFHSLGLVIIDEQHRFGVHQRL 409

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 410 ALREKGEQQGNHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRR 469

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           ++++ER++   L EG++AYW+C  IE+ +    ++       L        + ++HGRM 
Sbjct: 470 NDIVERVRQACLDEGRQAYWVCTLIEDSEVLEAQAAQVTSEELALALPELKVGLVHGRMK 529

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+S+M +FKN   +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 530 PAEKQSIMAAFKNNEIQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 589

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PL+  +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 590 AIASHCVLLYKTPLTHTAKQRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 649

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A       +L   ++ A+HI    P+
Sbjct: 650 ADLLRDQYMLPEVQRLARHIQQNYPE 675


>gi|320539304|ref|ZP_08038974.1| ATP-dependent DNA helicase [Serratia symbiotica str. Tucson]
 gi|320030696|gb|EFW12705.1| ATP-dependent DNA helicase [Serratia symbiotica str. Tucson]
          Length = 704

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 263/707 (37%), Positives = 393/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   LN +  PL+T  G+G   +  L+KI            DLLF+ P  + DR     
Sbjct: 12  MKGRLLNAV--PLTTLSGIGASQAGKLAKI------GLETIQDLLFHLPLRYEDRTRLYP 63

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+ G I + S     +RR     ++DGTG + L FF     M KN    G
Sbjct: 64  INDLLPGIYATVEGEILR-SDTSFGRRRMMTCQISDGTGILILRFFNFNAAM-KNSLATG 121

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++T  G+IK+  +    +HP Y       +      +  VY    G+   + +K+  +A
Sbjct: 122 RRVTAYGEIKRGNHGAESIHPEYRIQGESNEIDLQASLTPVYPTTEGIRQAMLRKLTDQA 181

Query: 179 LSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L  L    + E +  ++  +    S+ +A + +H P  A    D E    PA+ RL  +E
Sbjct: 182 LELLDTCTITELLPPEVRGE--LMSLPQALHTLHRPPPAIQLTDLEQGKHPAQRRLILEE 239

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +    +P+  + ++ +  L  +PFSPT +QE  + DI  DM +  
Sbjct: 240 LLAHNLSMLAVRAGAQSYQALPLLPDNRLKKPFLAQLPFSPTSAQERVVADIEADMQKTF 299

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V
Sbjct: 300 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHATNFRQWFEPLGLEV 359

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +++GTHA+FQ+ +Q+  L L+I+DEQHRFGV QRL
Sbjct: 360 GWLAGKQKGKARIAQQEAIASGQVSMVVGTHAIFQEQVQFNGLALIIIDEQHRFGVHQRL 419

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K        H L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 420 ALWEKGEDQGFHAHQLIMTATPIPRTLAMTAYADLDTSVINELPPGRTPVTTVAIPDTRR 479

Query: 469 DEVIERLKVVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R+K    E G++AYW+C  IE  +    ++    +  L        +A++HGRM 
Sbjct: 480 ADIIQRVKNACMEEGRQAYWVCTLIEGSELLEAQAAEVTWQELKAALPELKVALVHGRMK 539

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 540 AQEKQAVMQSFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 599

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 600 AVASHCVLLYKTPLSKMAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSTEFKV 659

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  Q P+L   R    R L    +Y+ A
Sbjct: 660 ADLLRDQAMIPEVQRIARHIHQQHPELA--RALIERWLPEKVRYSNA 704


>gi|226946848|ref|YP_002801921.1| ATP-dependent DNA helicase RecG [Azotobacter vinelandii DJ]
 gi|226721775|gb|ACO80946.1| ATP-dependent DNA helicase RecG [Azotobacter vinelandii DJ]
          Length = 691

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 255/694 (36%), Positives = 391/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L+++            DLLF+ P  + DR     I  +   +   
Sbjct: 8   PVTALKGVGAALAEKLARV------GLETLQDLLFHLPLRYQDRTRITPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G ++  +   + +RR   + L DG+G ++L F++  T   K+    G  +   G+++ 
Sbjct: 62  VEGTVAA-ADVVMGRRRSLLVRLQDGSGSLSLRFYHFSTAQ-KDALKRGTPLRCYGEVRP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y   N  +       +  +Y    GL+    + +  +AL+RL    LP+
Sbjct: 120 GASGLEIYHPEYRAQNGLEPAPVEQTLTPIYPTTEGLTQQRLRGLTEQALTRLGPHSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
           W+  +L +      + EA   +H P    D E        A+ RLA++ELL  Q++L  +
Sbjct: 180 WLPAELARAHRLGPLDEAIRYLHRPPPDADLEELAEGRHWAQHRLAFEELLTHQLSLQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    +    ++ Q  L N+ F+PT +Q     +I  D+S+   MLR++QGDVG
Sbjct: 240 RESLRSQQAPALPPASRLPQLFLANLGFAPTGAQRRVGAEIAHDLSRSEPMLRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT+VA +A   A+EAG Q  +MAP  ILA+QHY    ++ +   I +  + G +    
Sbjct: 300 AGKTVVAALAALQAIEAGYQVALMAPTEILAEQHYLNFARWLEPLGIDLAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----AT 419
           R  ALE+I  G   +++GTHALFQD +++  L L I+DEQHRFGVQQRL L QK      
Sbjct: 360 RGAALEKI-AGGCPMVVGTHALFQDEVRFRNLALAIIDEQHRFGVQQRLALRQKGIDGRL 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ T++I  +R  EVIER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRLEVIERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            EG++AYW+C  IEE +E   ++    F  L       ++ +IHGRM   +K +VM+ FK
Sbjct: 479 LEGRQAYWVCTLIEESEELTCQAAETTFEELSAALGELAVGLIHGRMKPAEKAAVMEEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH 
Sbjct: 539 AGRLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSTASHCVLLYHA 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL++++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQLGRERLAIMRETSDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R+ A+ +L   P   S   +  R L +  QY +
Sbjct: 659 VREAAQDLLACWPQHVSPLLE--RWLRHGQQYGQ 690


>gi|157373102|ref|YP_001481091.1| ATP-dependent DNA helicase RecG [Serratia proteamaculans 568]
 gi|157324866|gb|ABV43963.1| ATP-dependent DNA helicase RecG [Serratia proteamaculans 568]
          Length = 693

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 258/707 (36%), Positives = 394/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL+T  GVG   +  L+KI            DLL + P  + DR     
Sbjct: 1   MKGRLLDAV--PLTTLSGVGASQAGKLAKI------GLETIQDLLLHLPLRYEDRTRLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+ G + + +     +RR     ++DGTG +T+ FF     M KN    G
Sbjct: 53  INDLQPGIFATVEGEVLR-TDISFGRRRMLTCQISDGTGLLTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++T  G++K+  +   ++HP Y     +S+      +  VY    G+     +K+  +A
Sbjct: 111 RRVTAYGEVKRGNHGAEIIHPEYRIQGESSEVELQESLTPVYPTTEGIRQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L  L    + E +  +L       S+ +A + +H P       D E    PA++RL  +E
Sbjct: 171 LELLDTCAITELLPSEL--SGGLMSLPQALHTLHRPPPDIQLVDLEQGKHPAQKRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +    +P+  + ++  + L  +PF+PT +Q+  + DI  DM +  
Sbjct: 229 LLAHNLSMLAVRAGAQSYQALPLMPDDRLKTQFLAQLPFTPTGAQDRVVADIEADMQKGF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRQWFEPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +++GTHA+FQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARIAQQEAIASGQVSMVVGTHAIFQEQVKFSGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K        H L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHAHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R+K   L EG++AYW+C  IEE +    ++    +  L        +A+IHGRM 
Sbjct: 469 ADIIQRVKSACLEEGRQAYWVCTLIEESELLEAQAAEATWEELKTALPELKVALIHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 AQEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQKRLQVLRDSNDGFVIAQQDLEIRGPGELLGTRQTGSAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  Q P          R L    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRVARHIHQQYP--QHAHALIERWLPEKARYSNA 693


>gi|212213186|ref|YP_002304122.1| ATP-dependent DNA helicase RecG [Coxiella burnetii CbuG_Q212]
 gi|212011596|gb|ACJ18977.1| ATP-dependent DNA helicase [Coxiella burnetii CbuG_Q212]
          Length = 704

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 267/680 (39%), Positives = 405/680 (59%), Gaps = 23/680 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  + VG      L+ +      N     DLLF+ PS + DR     I  I    
Sbjct: 17  LTSPITALKRVGSATRELLANL------NIHTIQDLLFHLPSRYQDRTRVTAIGAIRHGD 70

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            V + G I Q ++     RR     ++DGTG + L F++      +     G ++   G 
Sbjct: 71  QVVVEGKI-QLATITYGGRRNLMCSISDGTGSLILRFYHFN-YQQQRQLKMGLRVRCFGN 128

Query: 129 IKK-LKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV- 184
           +++  + R+ M+HP Y   +      P   +  +Y    GLS   ++ +I ++L+ L   
Sbjct: 129 VRRNYQGRMEMIHPEYRIVDESTPLIPEDRLTPIYPTTKGLSQTKWRHLINQSLNYLKDP 188

Query: 185 --LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQI 238
             + E + +++      P++ EA   +H+P      +       P+++RLA++EL+A Q+
Sbjct: 189 NFVEELLPEEIRTPLRLPTLTEALFYVHSPPHNAPVDLLQASKHPSQQRLAFEELVAQQL 248

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
            L   R   + +   PI ++    +K+ R + F  T +Q+  I +I QD+S+   MLR+L
Sbjct: 249 GLQQWRLLIRTQP-APILIKNNWQEKLKRALTFELTSAQKRVIGEINQDLSKPKPMLRLL 307

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA +A+  AVE G Q+ IMAP  +LA+QHY+  +++     I V  + G+
Sbjct: 308 QGDVGSGKTIVAAMAILKAVENGYQSAIMAPTELLAEQHYQVFQRWFSPLGIRVGWLAGS 367

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  + R K L+ IA GQ  +IIGTHALFQ ++ + +L  +++DEQHRFGV QRL L +KA
Sbjct: 368 LTPSAREKTLQEIASGQLSVIIGTHALFQAAVTFQQLAFIVIDEQHRFGVHQRLALKEKA 427

Query: 419 T---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           T    PH L+MTATPIPRTL +T+  D+D S I E+P GRKPI TV+I  +R D+VIER+
Sbjct: 428 TPNYHPHQLIMTATPIPRTLAMTAYADLDFSIIDEQPPGRKPITTVLISNSRRDKVIERI 487

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           K    +GK+ YW+C  I + +     +    F  L + FT+ S+ +IHGR++  +K+ VM
Sbjct: 488 KKNCEQGKQVYWVCTLITDSEVLQCETAEATFKKLQQSFTNLSVGLIHGRLTKEEKDVVM 547

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +FKNG   LL+ATTVIEVG+DV +AS+++IEN+E  GLAQ+HQLRGRVGRGE+ S C+L
Sbjct: 548 GAFKNGDIDLLVATTVIEVGVDVPNASLMVIENSERLGLAQIHQLRGRVGRGEQKSYCVL 607

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PLSKN+  RL++L++T+DGFL+A++DL+ R  GE+LG +QSG+ +F IA    H  
Sbjct: 608 LYQEPLSKNARARLTLLRDTQDGFLVAQKDLELRGPGELLGARQSGLFRFRIADVIRHQH 667

Query: 655 LLEIARKDAKHILTQDPDLT 674
           LL   RK A  IL +  + T
Sbjct: 668 LLPAVRKAAFLILRRYSEFT 687


>gi|148550419|ref|YP_001270521.1| ATP-dependent DNA helicase RecG [Pseudomonas putida F1]
 gi|148514477|gb|ABQ81337.1| ATP-dependent DNA helicase RecG [Pseudomonas putida F1]
          Length = 692

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 252/695 (36%), Positives = 392/695 (56%), Gaps = 25/695 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG+  +  L+K+            D+LF+ P  + DR     I ++   +   
Sbjct: 8   PVTVLKGVGEAMAEKLAKV------GLENLQDVLFHLPLRYQDRTRVVPIGQLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DG+G +TL F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVTMGKRRSLVVRLGDGSGVLTLRFYHFSNAQ-KESLKRGTHLRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPV--LP 186
             + + + HP Y   N  +   P+   +  +Y    GL+    + +  ++L+ L    LP
Sbjct: 120 GASGLEIYHPEYRALNGNEPPPPVEQTLTPIYPSTEGLTQQRLRLLCQQSLALLGPRSLP 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           +W+  +L +      + EA   +HNP    D     E    A+ RLA++ELL  Q++   
Sbjct: 180 DWLPDELARDYQLAPLDEAIRYLHNPPADADLDELAEGQHWAQHRLAFEELLTHQLSQQR 239

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  +      +    ++  + L N+ F PT +Q+    +I  D+SQ   M+R++QGDV
Sbjct: 240 LRESLRSLRAPVLPKATRLQAQYLANLGFQPTGAQQRVANEIAYDLSQHEPMMRLVQGDV 299

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+VA +A   A+EAG Q  +MAP  ILA+QHY   K++ +   I V  + G +   
Sbjct: 300 GAGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKLKGK 359

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419
            R  +LE+IA+G   +++GTHALFQ+ +++  L L I+DEQHRFGVQQRL L +K     
Sbjct: 360 ARAASLEQIANGAP-MVVGTHALFQEEVRFKHLALAIIDEQHRFGVQQRLALRKKGVAGE 418

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++  
Sbjct: 419 LCPHQLIMTATPIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAA 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K  +M  F
Sbjct: 479 CAEGRQAYWVCTLIEESEELTCQAAESTYEELGSALGELRVGLIHGRMKPAEKAEIMAEF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYH
Sbjct: 539 KAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL 
Sbjct: 599 PPLSQIGRERLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 658

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
             R  A+ ++++ P+  S      R L +  QY +
Sbjct: 659 AVRDAAQALVSRWPEHVSPL--LDRWLRHGQQYGQ 691


>gi|118580930|ref|YP_902180.1| ATP-dependent DNA helicase RecG [Pelobacter propionicus DSM 2379]
 gi|118503640|gb|ABL00123.1| ATP-dependent DNA helicase RecG [Pelobacter propionicus DSM 2379]
          Length = 778

 Score =  603 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 255/712 (35%), Positives = 392/712 (55%), Gaps = 27/712 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+ + +GVG K S  L++             D L+  P+ + DR     I+ +    
Sbjct: 74  LETPMHSVKGVGPKLSALLAR------RGIACVEDALYLLPNRYEDRRELRPIAALRPGF 127

Query: 69  IVTITGYISQHSSFQ-LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
               +G +    S      RR ++ LL D +  +TL +F      +K V+ +GR+  VTG
Sbjct: 128 NELFSGRVLSAESVTSRGGRRFFEALLADDSATVTLKWFNCNPTFMKRVWKQGRRALVTG 187

Query: 128 KIKKLKNRIIMVHPHYI----------FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           ++ +  +++ + HP               ++  +NF  I  VY L  GLS  + ++++ E
Sbjct: 188 EVSRFASQLEVHHPDVEWLAEGSEPRDLLSADPLNFGGIIPVYPLTEGLSQKVMRRVMRE 247

Query: 178 ALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDE 232
            + R  P + E +  +LL++   P +  +   +H P   +  +      S A   +A+DE
Sbjct: 248 VVERFIPFVRELVPPELLERLGLPGLRHSLGHLHTPPVDERLDDLNGGCSAAHRAIAFDE 307

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
               ++ L L R     E GI   V     + ++R +PF  T++Q   + +I QDM   +
Sbjct: 308 FFFWELGLALKRCGVTLEEGIAFQVNHLYTKPLVRMLPFQLTRAQRRVLSEIKQDMMAPH 367

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++QGDVGSGKTLVAL+A   AVE G Q  IMAP  ILA+QH+  I ++  +  I  
Sbjct: 368 PMHRLVQGDVGSGKTLVALMAALVAVENGYQVAIMAPTEILAEQHWHTIHRWCADLGIAT 427

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            +IT  M    +  AL R+A G A I+IGTHA+ Q+ +++ +L L I+DEQHRFGV QR 
Sbjct: 428 VLITAGMRGREKSDALGRVADGSARIVIGTHAVIQEKVEFARLGLGIIDEQHRFGVLQRA 487

Query: 413 KLTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            L +K     P +L+MTATPIPRTL +T  GD+ +S I E P GR P++T + P ++   
Sbjct: 488 ILRKKGKGCNPDILVMTATPIPRTLAMTLFGDLSLSVIDELPPGRTPVETRVTPESQRVR 547

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDI 528
           V + ++  + +G++AY + P +EE + S  ++  +    L +       + ++HGRM+  
Sbjct: 548 VYDTIRREVGQGRQAYVVYPLVEENERSELKAAAQMAEQLGKEIFPDLRVGLLHGRMNPQ 607

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +KESVM SFK     +L++TTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRVGRG  
Sbjct: 608 EKESVMASFKARELDILVSTTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVGRGAA 667

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            S CIL+ +   S++   RL V++ T DGF IAE DL+ R  G+ LG +QSGMP F +A 
Sbjct: 668 RSRCILMTNGRPSEDGERRLKVMEATNDGFRIAEADLEIRGPGDFLGTRQSGMPDFRVAN 727

Query: 649 PELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
                +LLE AR+ A  +L QDP L S     +R  L L ++ +  +    G
Sbjct: 728 ILRDGALLEQARQAAFGLLEQDPGLASSGNAPLRDEL-LRRWGQRLELGAIG 778


>gi|153208666|ref|ZP_01946918.1| ATP-dependent DNA helicase RecG [Coxiella burnetii 'MSU Goat Q177']
 gi|154707134|ref|YP_001425108.1| ATP-dependent DNA helicase RecG [Coxiella burnetii Dugway
           5J108-111]
 gi|212218140|ref|YP_002304927.1| ATP-dependent DNA helicase RecG [Coxiella burnetii CbuK_Q154]
 gi|120575852|gb|EAX32476.1| ATP-dependent DNA helicase RecG [Coxiella burnetii 'MSU Goat Q177']
 gi|154356420|gb|ABS77882.1| ATP-dependent DNA helicase [Coxiella burnetii Dugway 5J108-111]
 gi|212012402|gb|ACJ19782.1| ATP-dependent DNA helicase [Coxiella burnetii CbuK_Q154]
          Length = 704

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 267/680 (39%), Positives = 405/680 (59%), Gaps = 23/680 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  + VG      L+ +      N     DLLF+ PS + DR     I  I    
Sbjct: 17  LTSPITALKRVGSATRELLANL------NIHTIQDLLFHLPSRYQDRTRVTAIGAIRHGD 70

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            V + G I Q ++     RR     ++DGTG + L F++      +     G ++   G 
Sbjct: 71  QVVVEGKI-QLATITYGGRRNLMCSISDGTGSLILRFYHFN-YQQQRQLKMGLRVRCFGN 128

Query: 129 IKK-LKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV- 184
           +++  + R+ M+HP Y   +      P   +  +Y    GLS   ++ +I ++L+ L   
Sbjct: 129 VRRNYQGRMEMIHPEYRIVDESTPLIPEDRLTPIYPTTKGLSQTKWRHLINQSLNYLKDP 188

Query: 185 --LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQI 238
             + E + +++      P++ EA   +H+P      +       P+++RLA++EL+A Q+
Sbjct: 189 NFVEELLPEEIRTPLRLPTLTEALFYVHSPPHNAPVDLLQASKHPSQQRLAFEELVAQQL 248

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
            L   R   + +   PI ++    +K+ R + F  T +Q+  I +I QD+S+   MLR+L
Sbjct: 249 GLQQWRLLIRTQP-APILIKNNWQEKLKRALTFELTSAQKRVIGEINQDLSKPKPMLRLL 307

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA +A+  AVE G Q+ IMAP  +LA+QHY+  +++     I V  + G+
Sbjct: 308 QGDVGSGKTIVAAMAILKAVENGYQSAIMAPTELLAEQHYQVFQRWFSPLGIRVGWLAGS 367

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  + R K L+ IA GQ  +IIGTHALFQ ++ + +L  +++DEQHRFGV QRL L +KA
Sbjct: 368 LTPSAREKTLQEIASGQLSVIIGTHALFQAAVTFQQLAFIVIDEQHRFGVHQRLALKEKA 427

Query: 419 T---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           T    PH L+MTATPIPRTL +T+  D+D S I E+P GRKPI TV+I  +R D+VIER+
Sbjct: 428 TPNYHPHQLIMTATPIPRTLAMTAYADLDFSIIDEQPPGRKPITTVLISNSRRDKVIERI 487

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           K    +GK+ YW+C  I + +     +    F  L + FT+ S+ +IHGR++  +K+ VM
Sbjct: 488 KKNCEQGKQVYWVCTLITDSEVLQCETAEATFKKLQQSFTNLSVGLIHGRLTKEEKDVVM 547

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +FKNG   LL+ATTVIEVG+DV +AS+++IEN+E  GLAQ+HQLRGRVGRGE+ S C+L
Sbjct: 548 GAFKNGDIDLLVATTVIEVGVDVPNASLMVIENSERLGLAQIHQLRGRVGRGEQKSYCVL 607

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PLSKN+  RL++L++T+DGFL+A++DL+ R  GE+LG +QSG+ +F IA    H  
Sbjct: 608 LYQEPLSKNARARLTLLRDTQDGFLVAQKDLELRGPGELLGARQSGLFRFRIADVIRHQH 667

Query: 655 LLEIARKDAKHILTQDPDLT 674
           LL   RK A  IL +  + T
Sbjct: 668 LLPAVRKAAFLILRRYSEFT 687


>gi|313501284|gb|ADR62650.1| RecG [Pseudomonas putida BIRD-1]
          Length = 692

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 252/695 (36%), Positives = 392/695 (56%), Gaps = 25/695 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG+  +  L+K+            D+LF+ P  + DR     I ++   +   
Sbjct: 8   PVTVLKGVGEAMAEKLAKV------GLENLQDMLFHLPLRYQDRTRVVPIGQLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DG+G +TL F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVTMGKRRSLVVRLGDGSGVLTLRFYHFSNAQ-KEGLKRGTHLRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPV--LP 186
             + + + HP Y   N  +   P+   +  +Y    GL+    + +  ++L+ L    LP
Sbjct: 120 GASGLEIYHPEYRALNGNEPPPPVEQTLTPIYPSTEGLTQQRLRLLCQQSLALLGPRSLP 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           +W+  +L +      + EA   +HNP    D     E    A+ RLA++ELL  Q++   
Sbjct: 180 DWLPDELARDYQLAPLDEAIRYLHNPPADADLDELAEGQHWAQHRLAFEELLTHQLSQQR 239

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  +      +    ++  + L N+ F PT +Q+    +I  D+SQ   M+R++QGDV
Sbjct: 240 LRESLRSLRAPVLPRATRLQAQYLANLGFQPTGAQQRVANEIAYDLSQHEPMMRLVQGDV 299

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+VA +A   A+EAG Q  +MAP  ILA+QHY   K++ +   I V  + G +   
Sbjct: 300 GAGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKLKGK 359

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419
            R  +LE+IA+G   +++GTHALFQ+ +++  L L I+DEQHRFGVQQRL L +K     
Sbjct: 360 ARAASLEQIANGAP-MVVGTHALFQEEVRFKHLALAIIDEQHRFGVQQRLALRKKGVAGE 418

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++  
Sbjct: 419 LCPHQLIMTATPIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAA 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K  +M  F
Sbjct: 479 CAEGRQAYWVCTLIEESEELTCQAAESTYEELGSALGELKVGLIHGRMKPAEKAEIMAEF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYH
Sbjct: 539 KAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL 
Sbjct: 599 PPLSQIGRERLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 658

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
             R  A+ ++++ P+  S      R L +  QY +
Sbjct: 659 AVRDAAQALVSRWPEHVSPL--LDRWLRHGQQYGQ 691


>gi|156936175|ref|YP_001440091.1| ATP-dependent DNA helicase RecG [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534429|gb|ABU79255.1| hypothetical protein ESA_04074 [Cronobacter sakazakii ATCC BAA-894]
          Length = 693

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 258/689 (37%), Positives = 384/689 (55%), Gaps = 26/689 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR   L+ +  PLS+  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MRGRLLDAV--PLSSLTGVGASQSAKLAKI------GLHTIQDLLLHFPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           IS++      T+ G +  + +     RR     ++DGTG +T+ FF     M KN    G
Sbjct: 53  ISDLLPGVYATVEGEVL-NCNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRIQGDVSTPEMQETLTPVYPTTEGVRQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   S+ EA   +H P      +D E    PA+ RL  +E
Sbjct: 171 LELLETCAITELLPPEL--SQGLMSLPEALRTLHRPPPDMKLEDLESGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P+     + Q++L ++PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHAQPLEARDALKQQLLASLPFKPTGAQARVVAEIERDMALDI 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIANGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVSMVVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++IER++   L EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 GDIIERVRSACLEEGRQAYWVCTLIEESELLEAQAAEATWEELKTTLPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGEMHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQIRLQVLRDSNDGFMIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTS 675
           A      +++   ++ A+HI  + P+  +
Sbjct: 649 ADLLRDQAVIPEVQRIARHIHERYPEQAA 677


>gi|197286695|ref|YP_002152567.1| ATP-dependent DNA helicase RecG [Proteus mirabilis HI4320]
 gi|194684182|emb|CAR45643.1| ATP-dependent DNA helicase [Proteus mirabilis HI4320]
          Length = 695

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 253/709 (35%), Positives = 396/709 (55%), Gaps = 30/709 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL+T  GVG   +  L+KI            DLL + P  + D+ +   
Sbjct: 1   MKGKLLDAI--PLTTLHGVGASQADKLAKI------GLVTVEDLLLHLPLRYEDQTHLYA 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           IS++      T++G I + +     +R+     ++DG+G +TL FF   T  +KN   +G
Sbjct: 53  ISDLLPGIPATVSGEILR-TEVNFGRRKMMTCQISDGSGILTLRFFNF-TAAMKNNLAQG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYI--FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++   G+IK+      ++HP Y      S+      +  +YS   GL     +K+I +A
Sbjct: 111 KQVIAYGEIKRGSRGPEIIHPEYKIKVAGSEVKLQETLTPIYSTTEGLRQTSLRKLIEQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L+ L    + E +    +     P +A A   +HNP       + E    PA++RL  +E
Sbjct: 171 LTLLDTCAINELLPDQFI--YGLPPLATALRTLHNPPPDIAFAELEKGQHPAQKRLIIEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIP--INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           LLA  + +L  R   +     P  +     + ++ L  +PF+PT +Q+  + +I QD+ +
Sbjct: 229 LLAHNLGMLNARAGAQSYRAEPLLMPHGSTLREQFLATLPFTPTTAQQRVVNEIEQDLEK 288

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              M+R++QGDVGSGKTLVA ++   A+  G Q  +MAP  +LA+QH    +K+ +   I
Sbjct: 289 NYPMMRLIQGDVGSGKTLVAALSALRAIANGKQVALMAPTELLAEQHALTFRKWFEPFGI 348

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V  + G      R      IA+G+  IIIGTHA+FQ+ ++++ L LVI+DEQHRFGV Q
Sbjct: 349 QVGWLAGKQKGKAREAQQNAIANGEVSIIIGTHAIFQEQVKFHSLALVIIDEQHRFGVHQ 408

Query: 411 RLKLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           RL L     ++   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  
Sbjct: 409 RLALWKKGEEQGFHPHQLVMTATPIPRTLAMTAYADMDTSIIDELPPGRTPVTTVAIPDT 468

Query: 467 RIDEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524
           R +++IER++V    E ++AYW+C  IE+ +    ++    ++ L        I ++HGR
Sbjct: 469 RRNDIIERIRVACSEENRQAYWVCTLIEDSEVLEAQAAQVIYDELTIALPEIKIGLVHGR 528

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   +K++VM  FK    +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVG
Sbjct: 529 MKPAEKQAVMADFKENKLQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVG 588

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RG   S C+LLY  PL++ +  RL VL+++ DGF+IA++DL+ R  GE+LG KQ+G  +F
Sbjct: 589 RGAVASHCVLLYKTPLTQTARLRLQVLRDSNDGFVIAQKDLEIRGPGELLGTKQTGNAQF 648

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            +A      +L+   ++ A+++    P  +  +    R L    QY++A
Sbjct: 649 KVADLLRDQALIPEVQRIARYLHQHYPKHS--QALIERWLPAKTQYSQA 695


>gi|227355113|ref|ZP_03839524.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906]
 gi|227164900|gb|EEI49747.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906]
          Length = 695

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 253/709 (35%), Positives = 396/709 (55%), Gaps = 30/709 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL+T  GVG   +  L+KI            DLL + P  + D+ +   
Sbjct: 1   MKGKLLDAI--PLTTLHGVGASQADKLAKI------GLVTVEDLLLHLPLRYEDQTHLYA 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           IS++      T++G I + +     +R+     ++DG+G +TL FF   T  +KN   +G
Sbjct: 53  ISDLLPGIPATVSGEILR-TEVNFGRRKMMTCQISDGSGILTLRFFNF-TAAMKNNLAQG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYI--FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++   G+IK+      ++HP Y      S+      +  +YS   GL     +K+I +A
Sbjct: 111 KQVIAYGEIKRGSRGPEIIHPEYKIKVAGSEVKLQETLTPIYSTTEGLRQTSLRKLIEQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L+ L    + E +    +     P +A A   +HNP       + E    PA++RL  +E
Sbjct: 171 LTLLDTCAINELLPDQFI--YGLPPLATALRTLHNPPPDIAFAELEKGQHPAQKRLIIEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIP--INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           LLA  + +L  R   +     P  +     + ++ L  +PF+PT +Q+  + +I QD+ +
Sbjct: 229 LLAHNLGMLNARAGAQSYRAEPLLMPHGSTLREQFLATLPFTPTTAQQRVVNEIEQDLEK 288

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              M+R++QGDVGSGKTLVA ++   A+  G Q  +MAP  +LA+QH    +K+ +   I
Sbjct: 289 NYPMMRLIQGDVGSGKTLVAALSALRAIANGKQVALMAPTELLAEQHALTFRKWFEPFGI 348

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V  + G      R      IA+G+  IIIGTHA+FQ+ ++++ L LVI+DEQHRFGV Q
Sbjct: 349 QVGWLAGKQKGKAREAQQNAIANGEVSIIIGTHAIFQEQVKFHSLALVIIDEQHRFGVHQ 408

Query: 411 RLKLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           RL L     ++   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  
Sbjct: 409 RLALWKKGEEQGFHPHQLVMTATPIPRTLAMTAYADMDTSIIDELPPGRTPVTTVAIPDT 468

Query: 467 RIDEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524
           R +++IER++V    E ++AYW+C  IE+ +    ++    ++ L        I ++HGR
Sbjct: 469 RRNDIIERIRVACSEENRQAYWVCTLIEDSEVLEAQAAQVIYDELTIALPEIKIGLVHGR 528

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   +K++VM  FK    +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVG
Sbjct: 529 MKPAEKQAVMADFKENKLQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVG 588

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RG   S C+LLY  PL++ +  RL VL+++ DGF+IA++DL+ R  GE+LG KQ+G  +F
Sbjct: 589 RGAMASHCVLLYKTPLTQTARLRLQVLRDSNDGFVIAQKDLEIRGPGELLGTKQTGNAQF 648

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            +A      +L+   ++ A+++    P  +  +    R L    QY++A
Sbjct: 649 KVADLLRDQALIPEVQRIARYLHQHYPKHS--QALIERWLPAKTQYSQA 695


>gi|210622470|ref|ZP_03293175.1| hypothetical protein CLOHIR_01123 [Clostridium hiranonis DSM 13275]
 gi|210154183|gb|EEA85189.1| hypothetical protein CLOHIR_01123 [Clostridium hiranonis DSM 13275]
          Length = 691

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 245/676 (36%), Positives = 386/676 (57%), Gaps = 18/676 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            +   +G+G K +  L+K+            DLL+Y P  F DR    KI+++ +E  VT
Sbjct: 11  SIQYVKGIGPKKAEKLNKL------GIYTIKDLLYYFPRQFEDRSVIKKIAQLEDEEKVT 64

Query: 72  ITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           +   I+   S+  +K     +I + D TG   L FF R  E +KN F  G  I   GK+K
Sbjct: 65  VKALITNIESYTPKKGMTITRIDVKDDTGFAKLTFFNR--EYIKNTFRVGDSILAFGKVK 122

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWI 189
           K    + +      + ++   N   +  VY L  G++       +        + +PE++
Sbjct: 123 KNGRFVELNSCELEYLSTSPKNIGKLVPVYPLSYGITNKDIMNTVRMVFENKDIKIPEYM 182

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            + LL+K     I  A   IH P   KD E    A  RL ++ELL  Q+ L + +     
Sbjct: 183 PEYLLKKYRLCGIDYAIKNIHFP---KDKESLKVALYRLIFEELLVLQLGLFMYKGGNSN 239

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E GI    + +   ++L ++PFS T++Q  A+ +I+ DM  +  M R++QGDVGSGKT+V
Sbjct: 240 EKGILFKRD-QRLDEVLESLPFSLTRAQNRALNEIIDDMCSEKVMNRLVQGDVGSGKTVV 298

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           AL+A+A  V  G Q  +MAP  ILAQQHYE   +  ++  I VE++TG++ +  +   L 
Sbjct: 299 ALLALAECVFNGYQGALMAPTEILAQQHYESFTETFEDIGINVELLTGSVTKKQKEGILH 358

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           R   G+  I+IGTHAL +D++++  + LVI DEQHRFGV+QR KL+ K T+P +L+MTAT
Sbjct: 359 RARDGEIDILIGTHALIEDNVEFKNIGLVITDEQHRFGVRQRGKLSSKGTSPDILVMTAT 418

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWI 488
           PIPRTL L   GD+DIS I E P GR+PI+T+ +   + D+V    ++  + +G++ Y +
Sbjct: 419 PIPRTLALILYGDLDISIIDELPPGRQPIETIAVEKKKRDKVYNSLVRREVDKGRQVYIV 478

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP +EE +  +  S  E    +   F     + ++HG+M   +K+++M +FKN    +L+
Sbjct: 479 CPLVEESESLDITSATETAEEIKRDFFPDLRVGLLHGKMKPSEKDAIMTAFKNHELDILV 538

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRG+  S C+L+Y    S+    
Sbjct: 539 STTVIEVGVNVPNSTLMIIENAERFGLAQLHQLRGRVGRGKHQSYCVLIYGSN-SEVCRK 597

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ +++ T DGF I+E+DL+ R  GE  G  Q G+P+  +A    H  +L+  +++A+ I
Sbjct: 598 RMGIMEETNDGFKISEKDLEIRGPGEFFGTMQHGVPELKVANLFKHMKILKTVQQEARII 657

Query: 667 LTQDPDLTSVRGQSIR 682
           + +D  L     + ++
Sbjct: 658 IGEDSTLDFKEYRGLK 673


>gi|238755589|ref|ZP_04616926.1| ATP-dependent DNA helicase recG [Yersinia ruckeri ATCC 29473]
 gi|238706189|gb|EEP98569.1| ATP-dependent DNA helicase recG [Yersinia ruckeri ATCC 29473]
          Length = 693

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 391/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLST  GVG   +  L+K+            DLL + P  + DR    +
Sbjct: 1   MKGRLLDAV--PLSTLSGVGASQAGKLAKM------GLETIQDLLLHLPLRYEDRTRLYR 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+ G + + S     +RR     ++DG+G +TL FF     M KN    G
Sbjct: 53  INDLLPGIFATVKGEVLR-SDISFGRRRMLTCQISDGSGILTLRFFNFNAAM-KNSLSPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + +   G+ K   +   ++HP Y  H           +  VY    G+     +K+I +A
Sbjct: 111 KHVIAYGETKCGNHGPEIIHPEYRVHGENIGVELQESLTPVYPTTEGIRQATLRKLIDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   ++  S+ +A   +H P       D E    PA+ RL  +E
Sbjct: 171 LVLLDTSAITELLPTEL--SRTLISLPDAIRTLHRPPADIQLADLELGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +    +P+  E ++  + L N+PF+PT +Q+  + +I +D++ K 
Sbjct: 229 LLAHNLSMLAVRAGAQSYKALPLLAEEQLKPRFLANLPFAPTSAQKRVVAEIERDLTNKF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKT+VA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V
Sbjct: 289 PMMRLIQGDVGSGKTVVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWFEPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA G+  +++GTHA+FQD +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARIAQQEAIASGKVSMVVGTHAIFQDQVQFSGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDSRR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +E+I       L EG++AYW+C  IEE +    ++       L        + ++HGRM 
Sbjct: 469 NEIIIRVKNACLEEGRQAYWVCTLIEESELLEAQAAEATCEELKIALPEVRVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+SVM SFK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 529 AAEKQSVMQSFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQMRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      ++L   ++ A+H+  Q PD  +      R L    +Y  A
Sbjct: 649 ADLLRDQAMLPEVQRIARHLQQQYPDHAN--ALIERWLPERSRYTNA 693


>gi|327478768|gb|AEA82078.1| ATP-dependent DNA helicase RecG [Pseudomonas stutzeri DSM 4166]
          Length = 690

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 258/693 (37%), Positives = 396/693 (57%), Gaps = 23/693 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L+++            D+LF+ P  + DR     I  +   +   
Sbjct: 8   PVTALKGVGAALAEKLARV------GLETLQDVLFHLPLRYQDRTRVVPIGSLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G ++  +   + +RR   + L DG+G ++L F++      K     G ++   G+ + 
Sbjct: 62  IEGIVAG-ADIVMGRRRSLLVRLQDGSGTLSLRFYHFSQAQ-KEAMKRGTQLRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188
             + + + HP Y     +       +  +Y    GL+    + +  +ALSRL    LP+W
Sbjct: 120 GASGLEIYHPEYRALTGEPAPVEQTLTPIYPTTEGLTQQRLRNLSEQALSRLGPHSLPDW 179

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMR 244
           +  +L ++     + +A   +H P    D E        A+ RLA++ELL  Q++L  +R
Sbjct: 180 LPAELAREYRLGPLDQALRYLHRPPPDADLEELAEGRHWAQHRLAFEELLTHQLSLQRLR 239

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           ++ + +    +    ++ Q+ L N+ FSPT +Q+    +I  D++Q   MLR++QGDVG+
Sbjct: 240 ERVRAQQAPQLPPAKRLPQRFLANLGFSPTGAQQRVGAEIAYDLAQDEPMLRLVQGDVGA 299

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA +A   A+EAG Q  +MAP  ILA+QH+    K+ +   I V  + G +    R
Sbjct: 300 GKTVVAALAALQALEAGYQVALMAPTEILAEQHFLNFSKWLEPLGIEVAWLAGKLKGKAR 359

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATA 420
             ALE+I  G   +++GTHALFQD + + +L LVI+DEQHRFGVQQRL L QK       
Sbjct: 360 AAALEQI-AGGCPMVVGTHALFQDEVVFKRLALVIIDEQHRFGVQQRLALRQKGIDGRLC 418

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH L+MTATPIPRTL +++  D+D S + E P GR P+ T++I  +R  EVIER+++  +
Sbjct: 419 PHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRLEVIERVRIACN 478

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           EG++AYW+C  IEE +E   ++    F  L        + +IHGRM   +K +VM+ FK 
Sbjct: 479 EGRQAYWVCTLIEESEELTCQAAETTFEDLSAALVGLRVGLIHGRMKPAEKAAVMEQFKR 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYHPP
Sbjct: 539 GELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPP 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RL++++ T DGFLIAE+DL+ R  GE+LG +Q+G+ +F +A       LL   
Sbjct: 599 LSQLGRERLAIMRETCDGFLIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDAELLPAV 658

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           R  A+ +LT+ P   S   +  R L +  +Y +
Sbjct: 659 RDAAQELLTRWPQHVSPLLE--RWLRHGQEYGQ 689


>gi|146280531|ref|YP_001170684.1| ATP-dependent DNA helicase RecG [Pseudomonas stutzeri A1501]
 gi|145568736|gb|ABP77842.1| ATP-dependent DNA helicase RecG [Pseudomonas stutzeri A1501]
          Length = 690

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 258/693 (37%), Positives = 396/693 (57%), Gaps = 23/693 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L+++            D+LF+ P  + DR     I  +   +   
Sbjct: 8   PVTALKGVGAALAEKLARV------GLETLQDVLFHLPLRYQDRTRVVPIGSLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G ++  +   + +RR   + L DG+G ++L F++      K     G ++   G+ + 
Sbjct: 62  IEGIVAG-ADIVMGRRRSLLVRLQDGSGTLSLRFYHFSQAQ-KEAMKRGTQLRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEW 188
             + + + HP Y     +       +  +Y    GL+    + +  +ALSRL    LP+W
Sbjct: 120 GASGLEIYHPEYRALTGEPAPVEQTLTPIYPTTEGLTQQRLRNLSEQALSRLGPHSLPDW 179

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMR 244
           +  +L ++     + +A   +H P    D E        A+ RLA++ELL  Q++L  +R
Sbjct: 180 LPAELAREYRLGPLDQALRYLHRPPPDADLEELAEGRHWAQHRLAFEELLTHQLSLQRLR 239

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           ++ + +    +    ++ Q+ L N+ FSPT +Q+    +I  D++Q   MLR++QGDVG+
Sbjct: 240 ERVRAQQAPQLPPAKRLPQRFLANLGFSPTGAQQRVGAEIAYDLAQDEPMLRLVQGDVGA 299

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA +A   A+EAG Q  +MAP  ILA+QH+    K+ +   I V  + G +    R
Sbjct: 300 GKTVVAALAALQALEAGYQVALMAPTEILAEQHFLNFSKWLEPLGIEVAWLAGKLKGKAR 359

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATA 420
             ALE+I  G   +++GTHALFQD + + +L LVI+DEQHRFGVQQRL L QK       
Sbjct: 360 AAALEQI-AGGCPMVVGTHALFQDEVAFKRLALVIIDEQHRFGVQQRLALRQKGIDGRLC 418

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH L+MTATPIPRTL +++  D+D S + E P GR P+ T++I  +R  EVIER+++  +
Sbjct: 419 PHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRLEVIERVRIACN 478

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           EG++AYW+C  IEE +E   ++    F  L        + +IHGRM   +K +VM+ FK 
Sbjct: 479 EGRQAYWVCTLIEESEELTCQAAETTFEDLSAALVGLRVGLIHGRMKPAEKAAVMEQFKR 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYHPP
Sbjct: 539 GELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPP 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+    RL++++ T DGFLIAE+DL+ R  GE+LG +Q+G+ +F +A       LL   
Sbjct: 599 LSQLGRERLAIMRETCDGFLIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDAELLPAV 658

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           R  A+ +LT+ P   S   +  R L +  +Y +
Sbjct: 659 RDAAQELLTRWPQHVSPLLE--RWLRHGQEYGQ 689


>gi|83951900|ref|ZP_00960632.1| ATP-dependent DNA helicase RecG [Roseovarius nubinhibens ISM]
 gi|83836906|gb|EAP76203.1| ATP-dependent DNA helicase RecG [Roseovarius nubinhibens ISM]
          Length = 696

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 292/700 (41%), Positives = 427/700 (61%), Gaps = 8/700 (1%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP  L PLFA + T  GVG K +     +        +R  DL+F  P S IDR  R  I
Sbjct: 4   RPEILFPLFAGVETLPGVGPKLAQAFEGL------GVSRPRDLIFTLPHSGIDRRRRDTI 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                  +VT+   +  H + Q +   PY++ + D      L+FF+ + E L+ +  EG 
Sbjct: 58  RGAELPGVVTVEVEVGPHRAPQRRGG-PYRVTVEDSETSFQLVFFHARDEYLRRLLPEGA 116

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  V+G+++       MVHP ++    +    P  E VY L  G+S  +  K +  AL+R
Sbjct: 117 RRVVSGRVELFDGIAQMVHPDHMLPVEETGEIPDFEPVYPLTHGISQRVMAKAVAGALTR 176

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +  L EWI+     K  +P   +A    H P+       + PARERLAYDE LA Q+ L 
Sbjct: 177 VTALEEWIDPGQKAKAGWPDWNDAVIDAHGPQDRGGLAPSHPARERLAYDEFLAHQLTLA 236

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R + +   G     +G +  K+L  +P+ PT +Q  A+ DI  DM++  RM R+LQGD
Sbjct: 237 LARAKRRAAKGRESLGDGHLRDKVLGALPYRPTNAQTRAVTDIAGDMARPERMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VG+GKTLVA++A+  AVEAGGQ V+MAP  ILA+QH   +    +   + +EI+TG    
Sbjct: 297 VGAGKTLVAMLALLIAVEAGGQGVMMAPTEILARQHLAGLAPLAEAAGVRIEILTGRDKG 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R + L  +A G+  I++GTHA+FQ  +Q+  L L +VDEQHRFGV+QRL+L +K    
Sbjct: 357 AARGEKLRALAAGEIGILVGTHAVFQADVQFADLRLAVVDEQHRFGVRQRLELGRKGVLA 416

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPR+L L   GD+D+S + EKP GRKPIKT ++ + R++EV+  L+  ++E
Sbjct: 417 DVLVMTATPIPRSLALAQYGDMDVSILDEKPPGRKPIKTALVNMARMEEVVAHLRRAIAE 476

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++AYW+CP +EE +  +  S  ERF +L        + ++HG+M   +K++ M +F+ G
Sbjct: 477 GRQAYWVCPLVEESEAVDLSSADERFKALRAVLGEGHVGLVHGQMPPEEKDAAMAAFQAG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG+DV +ASI++IE AE+FGLAQLHQLRGRVGRGE  S+C+LLY  PL
Sbjct: 537 ETAVLVATTVIEVGVDVPNASIMVIERAEYFGLAQLHQLRGRVGRGEAESTCLLLYQAPL 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    RL+ ++ TEDGF IAE DL+ R  G+++G  QSG+P+F +A  E    L+ +A+
Sbjct: 597 SETGEKRLTTMRETEDGFRIAEVDLEMRGAGDVIGTAQSGLPRFRVADLEHQAGLMAVAQ 656

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ +L  DPDLT  RG++ R+LL+L + ++A   I+ G
Sbjct: 657 SDARKLLHDDPDLTGERGRAARVLLWLMEQDQAIGLIKVG 696


>gi|26991986|ref|NP_747411.1| ATP-dependent DNA helicase RecG [Pseudomonas putida KT2440]
 gi|24987117|gb|AAN70875.1|AE016731_10 ATP-dependent DNA helicase RecG [Pseudomonas putida KT2440]
          Length = 692

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 252/695 (36%), Positives = 392/695 (56%), Gaps = 25/695 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG+  +  L+K+            D+LF+ P  + DR     I ++   +   
Sbjct: 8   PVTVLKGVGEAMAEKLAKV------GLENLQDVLFHLPLRYQDRTRVVPIGQLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DG+G +TL F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVTMGKRRSLVVRLGDGSGVLTLRFYHFSNAQ-KEGLKRGTHLRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPV--LP 186
             + + + HP Y   N  +   P+   +  +Y    GL+    + +  ++L+ L    LP
Sbjct: 120 GASGLEIYHPEYRALNGNEPPPPVEQTLTPIYPSTEGLTQQRLRLLCQQSLALLGPRSLP 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           +W+  +L +      + EA   +HNP    D     E    A+ RLA++ELL  Q++   
Sbjct: 180 DWLPDELARDYQLAPLDEAIRYLHNPPADADLDELAEGQHWAQHRLAFEELLTHQLSQQR 239

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  +      +    ++  + L N+ F PT +Q+    +I  D+SQ   M+R++QGDV
Sbjct: 240 LRESLRSLRAPVLPRATRLQAQYLANLGFQPTGAQQRVANEIAYDLSQHEPMMRLVQGDV 299

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+VA +A   A+EAG Q  +MAP  ILA+QHY   K++ +   I V  + G +   
Sbjct: 300 GAGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKLKGK 359

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419
            R  +LE+IA+G   +++GTHALFQ+ +++  L L I+DEQHRFGVQQRL L +K     
Sbjct: 360 ARAASLEQIANGAP-MVVGTHALFQEEVRFKHLALAIIDEQHRFGVQQRLALRRKGVAGE 418

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++  
Sbjct: 419 LCPHQLIMTATPIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAA 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K  +M  F
Sbjct: 479 CAEGRQAYWVCTLIEESEELTCQAAESTYEELGSALGELKVGLIHGRMKPAEKAEIMAEF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYH
Sbjct: 539 KAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL 
Sbjct: 599 PPLSQIGRERLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 658

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
             R  A+ ++++ P+  S      R L +  QY +
Sbjct: 659 AVRDAAQALVSRWPEHVSPL--LDRWLRHGQQYGQ 691


>gi|197118286|ref|YP_002138713.1| ATP-dependent DNA helicase RecG [Geobacter bemidjiensis Bem]
 gi|197087646|gb|ACH38917.1| ATP-dependent DNA helicase RecG [Geobacter bemidjiensis Bem]
          Length = 772

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 252/711 (35%), Positives = 393/711 (55%), Gaps = 27/711 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L  P+ + +GVG K +  LSK             D L+  P+ + DR    KI+++   
Sbjct: 71  ELKTPMQSIKGVGPKLAATLSK------KGLDTVEDALYLLPNRYEDRRELKKIAQLRPG 124

Query: 68  RIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
                   +   ++   +  R Y + ++ D TG + L +F+     LK     GR+    
Sbjct: 125 NSEAFFATVVSAAAQTTKGGRRYFEAIVKDETGSLPLKWFHFHPNFLKKQLVPGRQGIFI 184

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDV----------NFPLIEAVYSLPTGLSVDLFKKIIV 176
           G + +   +  M HP   +    +           NF  I  VY L  G+S  + ++I+ 
Sbjct: 185 GDVAQFGFQREMHHPEVEWAAEGEDLSQVMARDPDNFGSILPVYPLTEGVSQKVMRRIMR 244

Query: 177 EALSRLPVLPE-WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR----ERLAYD 231
           +A+ R     +  +  +LLQ+    ++  A    H P +  D    +  R      LA+D
Sbjct: 245 DAVQRYSRYVKGALPDELLQRHKLLTLPVALREAHLPAQDSDLSALNSGRSSAHRSLAFD 304

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           EL   Q+ L L R+    E GI   V  +  +++L+ +PFS T +Q+  + +I +DM   
Sbjct: 305 ELFFLQLGLALKRRGIAVEDGISFKVTHRYTKELLKLLPFSLTAAQKRVLSEIKEDMMSP 364

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
           + M R++QGDVG GKTLVAL+A    VE   Q  IMAP  +LA+QHY  I  Y +   I 
Sbjct: 365 HPMHRLVQGDVGCGKTLVALMAALVCVENDYQVAIMAPTELLAEQHYLNIHGYCEKLGIG 424

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V ++T ++        LE+IA G   I++GTHA+ Q+ +++++L L I+DEQHRFGV QR
Sbjct: 425 VTLLTASVKGK--GDTLEKIASGATQIVVGTHAVIQEKVEFHRLGLGIIDEQHRFGVVQR 482

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            +L +K   P +L+MTATPIPRTL +T  GD+ +S I E P GR PI+T ++  +R  EV
Sbjct: 483 AQLKKKGANPDILVMTATPIPRTLSMTVFGDLSLSVIDELPPGRTPIETRMVRESRRKEV 542

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDID 529
              ++   ++G++AY I P +EE ++S+ ++ V+    L +       +A++HGRM   +
Sbjct: 543 YALVREEAAKGRQAYVIYPLVEETEKSDLKAAVQMAEHLAQDVFPDLRVAVLHGRMPAAE 602

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE+VM  FK GT  +L+ATTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRVGRG E 
Sbjct: 603 KEAVMKEFKAGTTDILVATTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVGRGSER 662

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S CILL    LS++   RL V+  + DGF+IAE DL+ R  G+ LG +Q+G+P+  +A  
Sbjct: 663 SRCILLAGDKLSEDGQKRLEVMVQSSDGFVIAEADLQIRGPGDFLGTRQAGLPELRVADI 722

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
                +LE ARKDA  ++ +DP+L++   + +R  + L ++    +    G
Sbjct: 723 LRDGGVLEQARKDAFALVERDPELSAPGHERLRGEMML-RWGGRLELASIG 772


>gi|70733354|ref|YP_263129.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens Pf-5]
 gi|68347653|gb|AAY95259.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens Pf-5]
          Length = 691

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 259/694 (37%), Positives = 395/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG+  +  L+K+            D+LF+ P  + DR     I  +   +   
Sbjct: 8   PVTALKGVGESMAEKLAKV------GLENLQDVLFHLPLRYQDRTRVVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K+    G ++   G+ + 
Sbjct: 62  IEGTV-SGADVVMGKRRSLLVRLQDGTGGLSLRFYHFSNAQ-KDGLKRGTRVRCYGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             + + + HP Y  I  +        +  +Y L  GL+    + +  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAISGDEPPPVDQTLTPIYPLTEGLTQQRLRLLCQQSLALLGPRSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+ ++L +      + +A   +H+P    D +        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   + +    + +  K+  K L+N+ F+PT +Q+    +I  D+SQ   MLR++QGDVG
Sbjct: 240 RDSLRSQRAPVLPLARKLPVKYLKNLGFAPTGAQQRVGNEIAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT+VA +A   A+EAG Q  +MAP  ILA+QH+   K++ +   + V  + G +    
Sbjct: 300 AGKTVVAALAALQALEAGYQVALMAPTEILAEQHFITFKRWLEPLGLEVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----AT 419
           R  ALE+   G A +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L QK      
Sbjct: 360 RSAALEQ-IAGGAPMVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRQKGVGGRL 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EVIER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDSRRIEVIERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    F  L        + +IHGRM   +K +VM  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCQAAETTFEDLSSALGELRVGLIHGRMKAPEKAAVMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYHP
Sbjct: 539 AGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + PD  S   +  R L +  QY +
Sbjct: 659 VRDAAQALLERWPDHVSPLLE--RWLRHGQQYGQ 690


>gi|29653656|ref|NP_819348.1| ATP-dependent DNA helicase RecG [Coxiella burnetii RSA 493]
 gi|161830062|ref|YP_001596254.1| ATP-dependent DNA helicase RecG [Coxiella burnetii RSA 331]
 gi|29540918|gb|AAO89862.1| ATP-dependent DNA helicase [Coxiella burnetii RSA 493]
 gi|161761929|gb|ABX77571.1| ATP-dependent DNA helicase RecG [Coxiella burnetii RSA 331]
          Length = 704

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 267/680 (39%), Positives = 404/680 (59%), Gaps = 23/680 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  + VG      L+ +      N     DLLF+ PS + DR     I  I    
Sbjct: 17  LTSPITALKRVGSATRELLANL------NIHTIQDLLFHLPSRYQDRTRVTAIGAIRHGD 70

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            V + G I Q ++     RR     ++DGTG + L F++      +     G ++   G 
Sbjct: 71  QVVVEGKI-QLATITYGGRRNLMCSISDGTGSLILRFYHFN-YQQQRQLKMGLRVRCFGN 128

Query: 129 IKK-LKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV- 184
           +++  + R+ M+HP Y   +      P   +  +Y    GLS   ++ +I ++L+ L   
Sbjct: 129 VRRNYQGRMEMIHPEYRIVDESTPLIPEDRLTPIYPTTKGLSQTKWRHLINQSLNYLKDP 188

Query: 185 --LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQI 238
             + E + + +      P++ EA   +H+P      +       P+++RLA++EL+A Q+
Sbjct: 189 NFVEELLPEKIRTPLRLPTLTEALFYVHSPPHNAPVDLLQASKHPSQQRLAFEELVAQQL 248

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
            L   R   + +   PI ++    +K+ R + F  T +Q+  I +I QD+S+   MLR+L
Sbjct: 249 GLQQWRLLIRTQP-APILIKNNWQEKLKRALTFELTSAQKRVIGEINQDLSKPKPMLRLL 307

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA +A+  AVE G Q+ IMAP  +LA+QHY+  +++     I V  + G+
Sbjct: 308 QGDVGSGKTIVAAMAILKAVENGYQSAIMAPTELLAEQHYQVFQRWFSPLGIRVGWLAGS 367

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  + R K L+ IA GQ  +IIGTHALFQ ++ + +L  +++DEQHRFGV QRL L +KA
Sbjct: 368 LTPSAREKTLQEIASGQLSVIIGTHALFQAAVTFQQLAFIVIDEQHRFGVHQRLALKEKA 427

Query: 419 T---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           T    PH L+MTATPIPRTL +T+  D+D S I E+P GRKPI TV+I  +R D+VIER+
Sbjct: 428 TPNYHPHQLIMTATPIPRTLAMTAYADLDFSIIDEQPPGRKPITTVLISNSRRDKVIERI 487

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           K    +GK+ YW+C  I + +     +    F  L + FT+ S+ +IHGR++  +K+ VM
Sbjct: 488 KKNCEQGKQVYWVCTLITDSEVLQCETAEATFKKLQQSFTNLSVGLIHGRLTKEEKDVVM 547

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +FKNG   LL+ATTVIEVG+DV +AS+++IEN+E  GLAQ+HQLRGRVGRGE+ S C+L
Sbjct: 548 GAFKNGDIDLLVATTVIEVGVDVPNASLMVIENSERLGLAQIHQLRGRVGRGEQKSYCVL 607

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PLSKN+  RL++L++T+DGFL+A++DL+ R  GE+LG +QSG+ +F IA    H  
Sbjct: 608 LYQEPLSKNARARLTLLRDTQDGFLVAQKDLELRGPGELLGARQSGLFRFRIADVIRHQH 667

Query: 655 LLEIARKDAKHILTQDPDLT 674
           LL   RK A  IL +  + T
Sbjct: 668 LLPAVRKAAFLILRRYSEFT 687


>gi|126666523|ref|ZP_01737501.1| ATP-dependent DNA helicase RecG [Marinobacter sp. ELB17]
 gi|126628911|gb|EAZ99530.1| ATP-dependent DNA helicase RecG [Marinobacter sp. ELB17]
          Length = 691

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 263/694 (37%), Positives = 409/694 (58%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L K+            DLLF+ P  + DR     +  +    +  
Sbjct: 8   PVTQLKGVGNALAEKLGKL------GIASLQDLLFHLPHRYEDRTRITAMGSLRIGDVAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G + + +   + +RR  ++ L D +G ++L FF+      KN F EG ++   G+++ 
Sbjct: 62  VEGEVMK-TDIVMGRRRSLQVTLKDHSGFVSLRFFHFNAAQ-KNQFAEGTQVRCFGEVRA 119

Query: 132 LKNRIIMVHPHYIFHNSQ--DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            ++   + HP Y  + +   D     +  VY L  G+     + +  +A++ L   P  +
Sbjct: 120 GRSGYELYHPEYQTNPTPMADEGSATLTPVYPLTEGIQQPRVRALCQQAVAYLKRYPIYD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLM 243
           W+   +L     P+I  A  ++H+P  +       E   PA++RL  +ELLA Q++LL +
Sbjct: 180 WLPPWVLVDYQLPAITAAVELVHSPPASASVAQLLEGRHPAQQRLVMEELLAHQLSLLQV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+Q +    +P+  +G ++++ L ++PF  T +Q   +++I QD++Q   MLR++QGDVG
Sbjct: 240 REQIQTRQALPLLPQGDLSERFLESLPFRLTGAQRQVLQEIRQDLTQPLPMLRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+ AG Q  +MAP  ILA+QHY+    +     I +  ++G +    
Sbjct: 300 SGKTVVAALAALQAIAAGTQVALMAPTEILAEQHYQNFCAWLAPLGIQLTWLSGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R++ALE ++ G A I IGTHALFQ+ + + +L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RQQALEALSSGAAGIAIGTHALFQNDVAFDRLALVIIDEQHRFGVHQRLALREKGAAGEL 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           APH L+MTATPIPRTL +++  D+D S I E P GRKPI+T+++P  R D+V+ER++   
Sbjct: 420 APHQLIMTATPIPRTLAMSAYADLDTSVIDELPPGRKPIETIVVPDGRRDDVVERVRNAC 479

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
             G++AYW+C  IEE +    ++       L E   +  I ++HGR+   +K  VM  FK
Sbjct: 480 QAGRQAYWVCTLIEESEVLQCQAAEVSATELAERLPNLRIGLVHGRLKSQEKAEVMAQFK 539

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   LL+ATTVIEVG+DV +AS+IIIEN E  GLAQLHQLRGRVGRGE+ S C+L+YHP
Sbjct: 540 SGALDLLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGEQASYCVLMYHP 599

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS N   RL  L++++DGF+IAE+DL+ R  GE+LG +Q+GM +F +A  E     +E+
Sbjct: 600 PLSLNGKARLQALRDSQDGFVIAEKDLEIRGPGEVLGTRQTGMMQFRLADFERDQHWIEV 659

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R+ A  ++    + T+V+G   R L    +Y E
Sbjct: 660 VREIAPRLMG---NKTAVQGLVRRWLGEKTRYGE 690


>gi|293393636|ref|ZP_06637946.1| DNA helicase RecG [Serratia odorifera DSM 4582]
 gi|291423971|gb|EFE97190.1| DNA helicase RecG [Serratia odorifera DSM 4582]
          Length = 693

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 256/707 (36%), Positives = 389/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL+T  GVG   +  L+KI            DLL + P  + DR     
Sbjct: 1   MKGRLLDAV--PLTTLSGVGASQAGKLAKI------GLETIQDLLLHLPLRYEDRTRLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G + + +     +RR     ++DGTG +T+ FF     M KN    G
Sbjct: 53  IGELLSGIFATVEGEVLR-TDISFGRRRMLTCQISDGTGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++T  G++K+  +   ++HP Y       +      +  VY    G+     +K+  +A
Sbjct: 111 RRVTAYGEVKRGNHGAEIIHPEYRIQGEHSEVELQESLTPVYPTTEGIRQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L+ L    + E +  +L       S+ +A + +H P       D E    PA++RL  +E
Sbjct: 171 LTLLDTCAIAELLPTEL--SGGLMSLPQALHTLHRPAPDIQLADLEQGRHPAQKRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +     P+  + ++  + L  +PF+PT +Q   + DI  D+ +  
Sbjct: 229 LLAHNLSMLAVRAGAQSYHAQPLMPDDRLKNQFLAQLPFAPTGAQRRVVADIEADLQKNF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRQWFEPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARIAQQEAIASGQVSMVVGTHAMFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K        H L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGYHAHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++IER++   L EG++AYW+C  IEE +    ++    +  L        +A++HGRM 
Sbjct: 469 ADIIERVRNACLQEGRQAYWVCTLIEESELLEAQAAEATWEELKTALPELKVALVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 529 AQEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI    P+         R L    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRVARHIHQNYPE--HAHALIERWLPEKARYSNA 693


>gi|120597135|ref|YP_961709.1| ATP-dependent DNA helicase RecG [Shewanella sp. W3-18-1]
 gi|120557228|gb|ABM23155.1| ATP-dependent DNA helicase RecG [Shewanella sp. W3-18-1]
          Length = 696

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 257/696 (36%), Positives = 393/696 (56%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +S     T
Sbjct: 13  PITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALSPGSYGT 66

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG ++L FF       +N    G  I   G++++
Sbjct: 67  IEAEIQSTQIIQ-GRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYGEVRR 124

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             ++  +VHP Y + +  +DV+    +  +Y    GL    + K+  +AL  L    L E
Sbjct: 125 GSHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALVLLKEGGLTE 184

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLLM 243
            +   L  + +  S+ +A   +H P       D E    PA++RL  +ELLA  +++L +
Sbjct: 185 LLPPQL--QPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNLSMLRL 242

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++   +  + +   G++    L  +PF PT +Q+  + DI +D+ + + M+R++QGDVG
Sbjct: 243 RQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLVQGDVG 302

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +    
Sbjct: 303 SGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGKLKGKA 362

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R ++L  I  G AH++IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +K      
Sbjct: 363 RTQSLADIESGAAHMVIGTHAIFQQHVVFNKLALIIIDEQHRFGVHQRLGLREKGMSQGF 422

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R +EV+ER++  V
Sbjct: 423 HPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLERVRNAV 482

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++ ++AYW+C  IEE +    ++  +    L       +I ++HGR+   +K+ +M  F
Sbjct: 483 ITDQRQAYWVCTLIEESEVLECQAAEDTAEELRLALPDLNIGLVHGRLKSAEKQQIMADF 542

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 543 KAGMIHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIASHCVLLYK 602

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RLSVL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA      +L+ 
Sbjct: 603 APLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQALIP 662

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H++TQ P+   V    +R L +   Y +A
Sbjct: 663 HIQKLANHVMTQAPE--KVDAIILRWLGHRQHYVQA 696


>gi|238784019|ref|ZP_04628035.1| ATP-dependent DNA helicase recG [Yersinia bercovieri ATCC 43970]
 gi|238715127|gb|EEQ07123.1| ATP-dependent DNA helicase recG [Yersinia bercovieri ATCC 43970]
          Length = 693

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 258/707 (36%), Positives = 390/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLST  GVG   +  L+K+            DLL + P  + DR    +
Sbjct: 1   MKGRLLDAV--PLSTLSGVGASQAGKLAKM------GLETIQDLLLHLPLRYEDRTQLYR 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++     VT+ G + + S     +RR     ++DG+G +TL FF     M KN    G
Sbjct: 53  IGDLQPGLSVTVEGEVLR-SDITFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + +   G+ K+  +   ++HP Y  H           +  VY    G+     +K+I +A
Sbjct: 111 KHVIAYGEAKRGNSGPEIIHPEYRVHGENIGVELQESLTPVYPTTEGIRQATLRKLIDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L+ L   V+ E +  +L   +S  S+ EA + +H P       D E    PA+ RL  +E
Sbjct: 171 LAMLDTCVIAELLPIEL--SRSLLSLPEAIHTLHRPPADIQLADLEKGKHPAQRRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +    +P+  E ++ Q+ L  +PF+PT++Q+  + +I QDM    
Sbjct: 229 LLAHNLSMLAVRAGAQSYRALPLLAEDQLKQRFLAALPFTPTRAQQRVVAEIEQDMMHNF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKT+VA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V
Sbjct: 289 PMMRLIQGDVGSGKTVVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLEPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R      +A GQ  +++GTHA+FQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQAAVASGQVSMVVGTHAMFQEQVKFSGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            +VI       L EG++AYW+C  IEE +    ++       L        + ++HGRM 
Sbjct: 469 SDVISRVKNACLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 529 GPEKQAVMLAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+H+  Q P+    R    R L    +Y  A
Sbjct: 649 ADLLRDQAMIPEVQRIARHLHQQYPE--HARALIERWLPERTRYTNA 693


>gi|163802262|ref|ZP_02196157.1| osmolarity sensor protein [Vibrio sp. AND4]
 gi|159174067|gb|EDP58877.1| osmolarity sensor protein [Vibrio sp. AND4]
          Length = 693

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 261/674 (38%), Positives = 392/674 (58%), Gaps = 24/674 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +    +    KR+   + ++DG G ITL FF   T  +KN F +G+ +   G+IK+
Sbjct: 64  IQGKVMAVDTI-FGKRKMLTVKISDGNGTITLRFFNF-TAAIKNNFSQGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + MVHP Y F+ ++  +     +  VY    GL     + +  +ALS L    + E
Sbjct: 122 GSMGLEMVHPDYKFYANEQKSDAEQSLTPVYPTTDGLRQITLRNLTEQALSLLDKAAVQE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L   +   S  +A + IH P    +     E   PA+ RL  +ELLA  +++L +
Sbjct: 182 LLPAGLYDHQITMS--QALHTIHRPPPKINLDEFDEGKHPAQIRLIMEELLAQNLSMLAV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + +++I +P+     + +++L  +PFSPT +Q   +K+I  D+ + + M+R++QGDVG
Sbjct: 240 RSKGQQDIALPLASCDSLKKQLLDQLPFSPTNAQARVVKEIEADLEKAHPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A A A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAAARAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIQVGWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R   L  IA G+A +++GTHALFQ+ + ++ L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 360 REAELACIASGEAQMVVGTHALFQEHVAFHHLALVIIDEQHRFGVHQRLELREKGAKQGA 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++   
Sbjct: 420 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRSAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM +F
Sbjct: 480 LNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQNF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 540 KDNQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 600 SPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLIP 659

Query: 658 IARKDAKHILTQDP 671
             ++ A+HI    P
Sbjct: 660 EVQRIARHIHDNYP 673


>gi|160873476|ref|YP_001552792.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS195]
 gi|160858998|gb|ABX47532.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS195]
          Length = 696

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 252/696 (36%), Positives = 390/696 (56%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +      T
Sbjct: 13  PITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGSYGT 66

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG ++L FF       +N    G  I   G++++
Sbjct: 67  IEAEIQSTQIIQ-GRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYGEVRR 124

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             ++  +VHP Y + +  +DV+    +  +Y    GL    + K+  +AL  L    L E
Sbjct: 125 GGHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALVLLEDGGLTE 184

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLLM 243
            +   L  + +  S+ +A   +H P       D E    PA++RL  +ELLA  +++L +
Sbjct: 185 LLPPQL--QPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNLSMLRL 242

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++   +  + +   G++    L  +PF PT +Q+  + DI +D+ + + M+R++QGDVG
Sbjct: 243 RQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLVQGDVG 302

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +    
Sbjct: 303 SGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGKLKGKA 362

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +    +  
Sbjct: 363 RAQSLADIESGAAQMVIGTHAIFQQHVVFNKLGLIIIDEQHRFGVHQRLGLREKGVSQGF 422

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R +EV+ER++  V
Sbjct: 423 HPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLERVRNAV 482

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++ ++AYW+C  IEE +    ++  +    L       +I ++HGR+   +K+ +M  F
Sbjct: 483 ITDKRQAYWVCTLIEESEVLECQAAEDTAEELRLALPELNIGLVHGRLKSAEKQQIMADF 542

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 543 KAGIIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHCVLLYK 602

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RLSVL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA      +L+ 
Sbjct: 603 APLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQALIP 662

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H++ Q P+   V    +R L +   Y +A
Sbjct: 663 HIQKLANHVMAQAPE--KVDAIILRWLGHKQHYVQA 696


>gi|197336391|ref|YP_002157245.1| ATP-dependent DNA helicase RecG [Vibrio fischeri MJ11]
 gi|197317881|gb|ACH67328.1| ATP-dependent DNA helicase RecG [Vibrio fischeri MJ11]
          Length = 693

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 260/696 (37%), Positives = 401/696 (57%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L KI            DLLF+ P  + DR     ++ +       
Sbjct: 10  PLTSLAGVGAKVAEKLEKI------GLVSIQDLLFHLPLRYEDRTRVYPMARVHSGLFAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +      Q  KR+   + ++DG G ITL FF     M KN F EG+ +   G+IK+
Sbjct: 64  VQGKVMSC-DMQFGKRKMLLVKISDGNGTITLRFFNFNAGM-KNSFSEGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFH--NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
             + + +VHP Y FH  +        +  VY    GL  +  + +  +AL  L    + E
Sbjct: 122 GGSGLEIVHPEYQFHVPSQPLEIEASLTPVYPTTDGLRQNTLRSLTDQALELLDKAAVTE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            + + L   +   ++ +A +IIH P  + +     E   PA++RL  +ELLA  +++L +
Sbjct: 182 LLPQGLYNNQ--ITLNQALHIIHRPDPSINLDAFDEGKHPAQQRLIMEELLAQNLSMLSV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + ++E  +P+     + QK+L  +PF+PT +Q+  + +I QD+++ + M+R++QGDVG
Sbjct: 240 RSKGQQEDALPLATLTNLKQKLLAQLPFTPTNAQQRVVAEIEQDLAKPHPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + ++  I V  + G +    
Sbjct: 300 SGKTLVAALAAVQAIEHGYQVALMAPTELLAEQHAANFAHWFESMGITVGWLAGKLTGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           + K LERI  G+A +I+GTHALFQ +++++ L LVI+DEQHRFGV QRL+L +       
Sbjct: 360 KEKELERITSGEAKMIVGTHALFQQNVEFHHLALVIIDEQHRFGVDQRLELREKGQKNGA 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+T+ +P  R DE++ +++   
Sbjct: 420 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTIAVPDTRRDEIVNKVRSAC 479

Query: 480 S-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             +G++AYW+C  I++ +    ++  +   +L       +I ++HGRM   +K+ +M  F
Sbjct: 480 MNDGRQAYWVCTLIDDSEVLEAQAASDTAEALRLQLPELNIGLVHGRMKPKEKQQIMQEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 540 KEGNLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RLSVL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 600 SPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQHLIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             ++ A+H+    P   + +   +R L     Y+ A
Sbjct: 660 EVQRIARHLHDNYP--QNAKAIILRWLGERDIYSNA 693


>gi|260599949|ref|YP_003212520.1| ATP-dependent DNA helicase RecG [Cronobacter turicensis z3032]
 gi|260219126|emb|CBA34481.1| ATP-dependent DNA helicase recG [Cronobacter turicensis z3032]
          Length = 693

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 256/689 (37%), Positives = 385/689 (55%), Gaps = 26/689 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR   L+ +  PLS+  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MRGRLLDAV--PLSSLTGVGASQSAKLAKI------GLHTIQDLLLHFPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+ G +  + +     RR     ++DGTG +T+ FF     M KN    G
Sbjct: 53  INDLLPGVYATVEGEVL-NCNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRIQGDVSAPEMQETLTPVYPTTEGVRQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   S+ EA   +H P      +D E    PA+ RL  +E
Sbjct: 171 LELLETCAITELLPPEL--SQGLMSLPEALRTLHRPPPDMKLEDLESGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   + +    ++ +++L ++PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHALSLAARDELKEQLLASLPFKPTGAQARVVAEIERDMALDI 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIANGKQVALMAPTELLAEQHANNFRNWFSPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   + IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQDAIASGQVSMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIYELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++IER++   L EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 SDIIERVRSACLEEGRQAYWVCTLIEESELLEAQAAEATWEELKITLPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGEMHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLS+ +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSRTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTS 675
           A      SL+   ++ A+HI  + P+  +
Sbjct: 649 ADLLRDQSLIPEVQRIARHIHERYPEQAA 677


>gi|322419244|ref|YP_004198467.1| ATP-dependent DNA helicase RecG [Geobacter sp. M18]
 gi|320125631|gb|ADW13191.1| ATP-dependent DNA helicase RecG [Geobacter sp. M18]
          Length = 769

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 392/711 (55%), Gaps = 27/711 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L  P++  +GVG K +  L+K             D L+  P+ + DR    +I+E+   
Sbjct: 68  ELKTPMTAIKGVGPKLADLLAK------KGIVTVEDALYLLPNRYEDRRQLKRIAELRPG 121

Query: 68  RIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
                   +    +   +  R Y + ++ D TG + L +F+   + LK  F  GR+    
Sbjct: 122 NSEAFFATVVSAEALTTKGGRRYFEAIVKDETGSLPLKWFHFHPQFLKKQFTPGRRGIFI 181

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDV----------NFPLIEAVYSLPTGLSVDLFKKIIV 176
           G + +   +  M HP   +    +           NF  I  VY L  G+S  + ++I+ 
Sbjct: 182 GDVSQFGFQREMHHPEVEWAAEGEDLEQVMARDPDNFGRILPVYPLTEGVSQKVMRRIMR 241

Query: 177 EALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR----ERLAYD 231
           + + R    L   + ++LL++    S+  A    H P  +      +  R      LA+D
Sbjct: 242 DTVQRYSRYLKGSLPEELLRRHRLSSLPVAMREAHQPDPSGSIADLNNGRSEAHRSLAFD 301

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           EL   Q+ L + ++    E GI   V  +  +++L+ +PFS T +Q+  + +I +DM   
Sbjct: 302 ELFFLQLGLAMKKRGIALEDGISFKVTHRYTKELLKLLPFSLTGAQKRVLSEIKEDMIAP 361

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
           + M R++QGDVG GKTLVAL+A    VE   Q  IMAP  +L++QHY  I  Y +   I 
Sbjct: 362 HPMHRLVQGDVGCGKTLVALMAALICVENDYQVAIMAPTELLSEQHYLNIHGYCERLGIS 421

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V ++T ++        LE+IA GQ  +++GTHA+ Q+ +++++L L I+DEQHRFGV QR
Sbjct: 422 VALLTASVKGKS--DTLEKIASGQTRVVVGTHAVIQEKVEFHRLGLGIIDEQHRFGVVQR 479

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             L +K + P +L+MTATPIPRTL +T  GD+ +S I E P GR PI+T ++  +R  EV
Sbjct: 480 ALLKKKGSNPDILVMTATPIPRTLSMTVFGDLSLSVIDELPPGRTPIETRMVRESRRLEV 539

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDID 529
              ++  + +G++AY I P +EE ++ + ++ V+    L         +A++HGRMS  +
Sbjct: 540 YSLVREEVQKGRQAYVIYPLVEESEKIDLKAAVQMAEHLARDVFPDLRLAVLHGRMSAAE 599

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE+VM SFK G   +L+ATTVIEVGIDV +A+++++E+AE FGL+QLHQLRGRVGRG E 
Sbjct: 600 KEAVMKSFKAGETDILVATTVIEVGIDVPNATVMVVEHAERFGLSQLHQLRGRVGRGCER 659

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S CILL    LS++   RL V+  + DGF+IAE DL+ R  G+ LG +Q+G+P+  +A  
Sbjct: 660 SRCILLAGDKLSEDGQKRLEVMVKSSDGFVIAEADLQIRGPGDFLGTRQAGLPELRVADI 719

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
                +LE ARK+A  ++ +DP+L +   + ++  L L ++    +    G
Sbjct: 720 LRDGGVLEQARKEAFALVERDPELVTPGNERLKGELML-RWGGRLELAAIG 769


>gi|152998896|ref|YP_001364577.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS185]
 gi|151363514|gb|ABS06514.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS185]
          Length = 696

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 252/696 (36%), Positives = 390/696 (56%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +      T
Sbjct: 13  PITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGSYGT 66

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG ++L FF       +N    G  I   G++++
Sbjct: 67  IEAEIQSTQIIQ-GRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYGEVRR 124

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             ++  +VHP Y + +  +DV+    +  +Y    GL    + K+  +AL  L    L E
Sbjct: 125 GGHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALVLLEDGGLTE 184

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLLM 243
            +   L  + +  S+ +A   +H P       D E    PA++RL  +ELLA  +++L +
Sbjct: 185 LLPPQL--QPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNLSMLRL 242

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++   +  + +   G++    L  +PF PT +Q+  + DI +D+ + + M+R++QGDVG
Sbjct: 243 RQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLVQGDVG 302

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +    
Sbjct: 303 SGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGKLKGKA 362

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +    +  
Sbjct: 363 RTQSLADIESGAAQMVIGTHAIFQQHVVFNKLALIIIDEQHRFGVHQRLGLREKGVSQGF 422

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R +EV+ER++  V
Sbjct: 423 HPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLERVRNAV 482

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++ ++AYW+C  IEE +    ++  +    L       +I ++HGR+   +K+ +M  F
Sbjct: 483 ITDKRQAYWVCTLIEESEVLECQAAEDTAEELRLALPELNIGLVHGRLKSAEKQQIMADF 542

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 543 KAGIIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHCVLLYK 602

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RLSVL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA      +L+ 
Sbjct: 603 APLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQALIP 662

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H++ Q P+   V    +R L +   Y +A
Sbjct: 663 HIQKLANHVMAQAPE--KVDAIILRWLGHKQHYVQA 696


>gi|315265705|gb|ADT92558.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS678]
          Length = 691

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 252/696 (36%), Positives = 390/696 (56%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +      T
Sbjct: 8   PITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGSYGT 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG ++L FF       +N    G  I   G++++
Sbjct: 62  IEAEIQSTQIIQ-GRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYGEVRR 119

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             ++  +VHP Y + +  +DV+    +  +Y    GL    + K+  +AL  L    L E
Sbjct: 120 GGHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALVLLEDGGLTE 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLLM 243
            +   L  + +  S+ +A   +H P       D E    PA++RL  +ELLA  +++L +
Sbjct: 180 LLPPQL--QPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNLSMLRL 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++   +  + +   G++    L  +PF PT +Q+  + DI +D+ + + M+R++QGDVG
Sbjct: 238 RQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLVQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +    
Sbjct: 298 SGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGKLKGKA 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +    +  
Sbjct: 358 RAQSLADIESGAAQMVIGTHAIFQQHVVFNKLGLIIIDEQHRFGVHQRLGLREKGVSQGF 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R +EV+ER++  V
Sbjct: 418 HPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLERVRNAV 477

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++ ++AYW+C  IEE +    ++  +    L       +I ++HGR+   +K+ +M  F
Sbjct: 478 ITDKRQAYWVCTLIEESEVLECQAAEDTAEELRLALPELNIGLVHGRLKSAEKQQIMADF 537

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 538 KAGIIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHCVLLYK 597

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RLSVL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA      +L+ 
Sbjct: 598 APLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQALIP 657

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H++ Q P+   V    +R L +   Y +A
Sbjct: 658 HIQKLANHVMAQAPE--KVDAIILRWLGHKQHYVQA 691


>gi|221134070|ref|ZP_03560375.1| ATP-dependent DNA helicase RecG [Glaciecola sp. HTCC2999]
          Length = 695

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 256/698 (36%), Positives = 381/698 (54%), Gaps = 26/698 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GVG K +  L  +            D+LF+ P  + DR +   I ++     
Sbjct: 10  HQPITALKGVGAKVAEKLQNL------GLRTVQDVLFHLPHRYEDRTHIYNIVDLYHGIH 63

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            TI G + Q S     +RR   I + D +G IT  FFY      K     G ++   G+ 
Sbjct: 64  ATIQGEVIQ-SDIVFGRRRALVIKIKDASGIITCRFFYFSAAQ-KAQLTPGTQVRAFGEY 121

Query: 130 KKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--L 185
           ++ K+ +  VHP Y   N  DV      +  VY    G+     + +  +AL  L    L
Sbjct: 122 RRGKHALECVHPEYKVVNPNDVMPVAESLTPVYPTTEGVKQVTLRNLTEQALLALKQGAL 181

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241
            E +   +  ++   S++EA +I+H P          E   PA++RL  +EL+A Q ++L
Sbjct: 182 AELMPDGMYAQQ--LSLSEALHIVHRPPPDVSLHLFEEGKHPAQQRLILEELMAHQCSVL 239

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            MR   + + G  I  +  + Q  L+ +PFSPT +Q   +++I  DM Q   M+R++QGD
Sbjct: 240 KMRANNEVQPGFAIAQDEALQQAFLQTLPFSPTNAQARVVREIQHDMQQPYPMMRLVQGD 299

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A    + AG Q V+MAP  +LA+QH      +     I V  + G +  
Sbjct: 300 VGSGKTLVAALAALNVIAAGYQVVLMAPTELLAEQHAHNFSSWLSPLGIHVGWLAGKLKG 359

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT----QK 417
             R + L  +  G  ++++GTHA+FQ+ +QY  L +VI+DEQHRFGV QRL L     Q+
Sbjct: 360 KARDQVLTALESGDINLLVGTHAVFQEKVQYKNLAMVIIDEQHRFGVHQRLALREKGEQQ 419

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPRTL +T+  D++ S I E P GR P++T+++P  R D++I R+  
Sbjct: 420 GRFPHQLVMTATPIPRTLAMTAYADLNTSVIDELPPGRTPVQTIVLPAARRDQIIARVHK 479

Query: 478 VLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
            ++E  ++ YW+C  IEE +    ++  + F +L    T   I ++HGRM   +K+++M 
Sbjct: 480 SVTEANRQVYWVCTLIEESEVLQSQAAEDTFIALRTALTDLRIGLVHGRMKPAEKQTIMA 539

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK     +L+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L+
Sbjct: 540 QFKAAELDVLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSIESHCVLM 599

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y   LSK +  RL VL+++ DGF IA+ DL+ R  GEILG KQ+G+    IA       L
Sbjct: 600 YDGNLSKTATKRLGVLRDSNDGFYIAQMDLEIRGPGEILGTKQTGIADLKIADLVRDGHL 659

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           LE  ++ A+H+ T  P   + +    R L    QY  A
Sbjct: 660 LEQVQQLAEHLFTHHP--ANAQAMINRWLGAREQYTNA 695


>gi|59713067|ref|YP_205843.1| ATP-dependent DNA helicase [Vibrio fischeri ES114]
 gi|59481168|gb|AAW86955.1| ATP-dependent DNA helicase [Vibrio fischeri ES114]
          Length = 693

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 261/696 (37%), Positives = 402/696 (57%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L KI            DLLF+ P  + DR     ++ +       
Sbjct: 10  PLTSLAGVGAKVAEKLEKI------GLVSIQDLLFHLPLRYEDRTRVYPMARVHSGLFAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +      Q  KR+   + ++DG G ITL FF     M KN F EG+ +   G+IK+
Sbjct: 64  VQGKVMSC-DMQFGKRKMLLVKISDGNGTITLRFFNFNAGM-KNSFSEGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFH--NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
             + + +VHP Y FH  +        +  VY    GL  +  + +  +AL  L    + E
Sbjct: 122 GGSGLEIVHPEYQFHVPSQPLEIEASLTPVYPTTDGLRQNTLRSLTDQALELLDKAAVTE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            + + L   +   ++ +A +IIH P  + +     E   PA++RL  +ELLA  +++L +
Sbjct: 182 LLPQGLYNNQ--ITLNQALHIIHRPDPSINLDAFDEGKHPAQQRLIMEELLAQNLSMLSV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + ++E  +P+     + QK+L  +PF+PT +Q+  + +I QD+++ + M+R++QGDVG
Sbjct: 240 RSKGQQEDALPLATLTNLKQKLLAQLPFTPTNAQQRVVAEIEQDLAKPHPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + ++  I V  + G +    
Sbjct: 300 SGKTLVAALAAVQAIEHGYQVALMAPTELLAEQHAANFAHWFESMGITVGWLAGKLTGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           + K LERIA G+A +I+GTHALFQ +++++ L LVI+DEQHRFGV QRL+L +       
Sbjct: 360 KEKELERIASGEAKMIVGTHALFQQNVEFHHLALVIIDEQHRFGVDQRLELREKGQKNGA 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+T+ +P  R DE++ +++   
Sbjct: 420 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTIAVPDTRRDEIVNKVRSAC 479

Query: 480 S-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             +G++AYW+C  I++ +    ++  +   +L       +I ++HGRM   +K+ +M  F
Sbjct: 480 MNDGRQAYWVCTLIDDSEVLEAQAASDTAEALRLQLPELNIGLVHGRMKPKEKQQIMQEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 540 KEGNLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RLSVL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 600 SPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQHLIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             ++ A+H+    P   + +   +R L     Y+ A
Sbjct: 660 EVQRIARHLHDNYP--KNAKAIILRWLGERDIYSNA 693


>gi|307824309|ref|ZP_07654535.1| ATP-dependent DNA helicase RecG [Methylobacter tundripaludum SV96]
 gi|307734689|gb|EFO05540.1| ATP-dependent DNA helicase RecG [Methylobacter tundripaludum SV96]
          Length = 699

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 254/704 (36%), Positives = 385/704 (54%), Gaps = 28/704 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P+    G+G + +  L K+            DL+F+ P  + DR     I  +  
Sbjct: 5   NALNQPVGILTGIGAQTANRLQKL------GLCTLQDLIFHLPLRYEDRTRVYPICSLKP 58

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              V I+G + + +    + R+     ++DGTG I+L FF+       N    G  I+  
Sbjct: 59  GMSVLISGKV-EFTDILPRGRKSLICRISDGTGFISLKFFHFSASQ-HNALKPGTSISCF 116

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-- 182
            +++     + MVHP Y    + D  +    +  VY L  GL  ++ +K + +AL     
Sbjct: 117 AEVRYGFAGLEMVHPEYKVIANPDGCITETRLTPVYPLTEGLGQNIIRKAVRQALDLCRQ 176

Query: 183 --PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAG 236
              +L +WI + +L++  +PS+A+A   +H P ++   E       PA +RLA++ELL  
Sbjct: 177 DPELLTDWIPESILKQYHYPSLADAIQTLHAPDESVSIEALQNGSVPALKRLAFEELLTH 236

Query: 237 QIALLLMRKQFKKEIGIPINVE---GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            + L   R + K       +V           +R++PF  T +Q+  I +I  D   ++ 
Sbjct: 237 FLILRTTRNKTKAWQAPSFSVGAAGKTATNHFIRSLPFKLTGAQQRVIAEIEADCRLQHP 296

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M+R++QGDVGSGKT+V+  A   A+ AG Q  +MAP  +LA+QH      + +  Q  V 
Sbjct: 297 MMRLVQGDVGSGKTVVSAYAALLALTAGYQVAVMAPTELLAEQHKRNFSIWFEGFQTQVV 356

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            +TG +    R+  L+ +  G A IIIGTHALFQDS+ +++L L+I+DEQHRFGV QRL 
Sbjct: 357 YLTGQLKGNARKTVLQALEDGTAGIIIGTHALFQDSVHFHRLGLIIIDEQHRFGVHQRLA 416

Query: 414 LTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L +K       PH L+MTATPIPRTL +    D+DIS I E P GRKPI T +IP  R  
Sbjct: 417 LREKGQQGNIRPHQLVMTATPIPRTLAMLQYSDLDISIIDELPPGRKPIVTSVIPAERRA 476

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528
           +VI+R+   + + ++ YW+C  IEE +     +  +   +L E   +  +A+IHGRM   
Sbjct: 477 DVIDRINGWVGKNRQVYWVCTLIEESEVLQCEAAEKTAETLTEALPNVRVALIHGRMKSA 536

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +K++VM  FKN    LL+ATTVIEVG+DV +A ++IIEN E  GL+QLHQLRGRVGRG +
Sbjct: 537 EKDAVMQDFKNHRIDLLVATTVIEVGVDVPNAGLMIIENPERLGLSQLHQLRGRVGRGGD 596

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            S C+L+Y  PLS  +  RL VL+++ DGF+IAE+DL+ R  GE++G +Q+G   F IA 
Sbjct: 597 DSYCLLMYQAPLSDTARHRLGVLRDSNDGFVIAEKDLELRGPGEVMGTRQTGQMHFKIAD 656

Query: 649 PELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
                 LL+  ++      T  P   +++    R L    +Y+E
Sbjct: 657 LARDADLLDTVQQIGDSFFTHSP--QAIQPLCDRWLGAPTEYSE 698


>gi|322835059|ref|YP_004215086.1| ATP-dependent DNA helicase RecG [Rahnella sp. Y9602]
 gi|321170260|gb|ADW75959.1| ATP-dependent DNA helicase RecG [Rahnella sp. Y9602]
          Length = 693

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 261/707 (36%), Positives = 400/707 (56%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL++  GVG   +  L+K+            DLL + P  + DR     
Sbjct: 1   MKGRLLDAI--PLTSLSGVGASQADKLAKL------GLETIQDLLLHLPLRYEDRTRLYT 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      TI G + + S     +RR     ++DGTG  TL FF     M KN    G
Sbjct: 53  INDLQPGIFATIEGEVLR-SDISFGRRRMLTCQISDGTGMATLRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++T  G+IK+      ++HP Y     NS+ V    +  VY    G+     +K+  +A
Sbjct: 111 RRVTAYGEIKRGTIGAEIIHPEYRIQGENSEVVLQESLTPVYPTTEGIRQATLRKLTDQA 170

Query: 179 LSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L  L  +P  E + ++L   +S   + +A +++H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTVPVAELLPEEL--SRSLIPLPQALHLLHRPPPDIQLADLEKGHHPAQRRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +    +P++ + ++  + L ++PFSPT +Q   + +I QD+++  
Sbjct: 229 LLAHNLSMLAVRAGTQSYKALPLHHDDRLKNQFLASLPFSPTGAQARVVAEIEQDLAKSY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALCAIAQGQQVGLMAPTELLAEQHANNFRQWFEPLGIQV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   + IA GQ  +++GTHA+FQ+ + +  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQDAIASGQVSMVVGTHAIFQEQVLFSSLSLVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGLQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I R+K     E ++AYW+C  IEE +    ++    +  L E   + +I ++HGRM 
Sbjct: 469 SDIISRVKSACEQENRQAYWVCTLIEESEMLEAQAAEATWEGLKEALPALNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 AQEKQAVMQAFKQGEVQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQKRLQVLRDSNDGFVIAQQDLEIRGPGELLGTRQTGSAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+++  Q PD    +    R L    +Y  A
Sbjct: 649 ADLLRDQAMIPDVQRIARYLQQQFPD--HAKALIERWLPERVRYTNA 693


>gi|91202709|emb|CAJ72348.1| similar to DNA helicase [Candidatus Kuenenia stuttgartiensis]
          Length = 686

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 248/697 (35%), Positives = 386/697 (55%), Gaps = 20/697 (2%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           + L  P+    G+G K S  + ++            DLL+Y P  + D     KI+E   
Sbjct: 3   HSLLQPVQYLNGIGPKRSKIIGRL------GIQTVHDLLYYFPRDYNDFSKIQKIAEAKT 56

Query: 67  ERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
              +TI G I+   +      +   ++ ++D TG I   +F +    L N F  G ++ +
Sbjct: 57  GDSITIQGTINGIQNRVARMGKTILEVFVSDETGVIAATWFNQ--PFLVNKFRIGDRLFL 114

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPL--IEAVYSLPTGLSVDLFKKIIVEAL-SRL 182
            GK+   K  + ++ P Y   + +        I  VY L   +S    +KII  A+   +
Sbjct: 115 HGKVNSYKY-LQLLSPEYEIISDRQAGGSGWGIIPVYPLTEHISQSQLRKIIHAAIQEYV 173

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            +L + +   L++K +F  +A+A   IH+P      E  + A+ RL Y+EL   ++A+ L
Sbjct: 174 DLLEDALPLPLIKKYNFLPVADAIRHIHSPPS---MELLNRAKNRLVYEELFCLEMAMAL 230

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            R + K E  IP      +   I   IPF+ TK+QE  I +I +DM     M R+LQGDV
Sbjct: 231 RRYRIKGETRIPFKAGANVDAHIRNIIPFTLTKAQERVIYEIREDMKSDKPMNRLLQGDV 290

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VAL A   AV  G QA  MAP  +LAQQH+  ++K+   +Q+ V ++TG+    
Sbjct: 291 GSGKTVVALYAALIAVANGYQATFMAPTELLAQQHFRTLQKFLSGSQVRVCLLTGSGNAT 350

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
           H++  + +++ G   +I+GTHA+ ++S+ + KL LV++DEQH+FGV QRLKL +K  +P 
Sbjct: 351 HKKNVIAQVSDGGIDLIVGTHAIIEESVSFKKLGLVVIDEQHKFGVLQRLKLRKKGASPD 410

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL LT  GD+DIS + E P GR P+KT  +  N+     + ++  +S+G
Sbjct: 411 VLIMTATPIPRTLSLTLFGDMDISMLDEMPPGRIPVKTFWVSKNKEKAAYDFIRGEISKG 470

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNG 540
           K+ + + P +E  ++ + +S +     L         + ++HG+M   +KE  M  FK  
Sbjct: 471 KQVFVVYPLVEHSEKLDLKSAITEAERLRNEIFPECKVGLLHGKMKSAEKEQAMADFKER 530

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++T +IEVGIDV +A+I++IE+AE FGLAQLHQLRGR+GRG + S C LL+  P 
Sbjct: 531 RYDILVSTIIIEVGIDVPNATIMVIEHAERFGLAQLHQLRGRIGRGGKQSYC-LLFGTPK 589

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +  S  RL  + NT DGF IAE D + R  GE  G +Q G+P+  I+      SLL+ AR
Sbjct: 590 TALSRDRLRTMVNTSDGFKIAEMDFRLRGPGEFFGTRQHGLPELKISNIFHDFSLLQKAR 649

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
           KDA  I+ +DP L++   Q I+  +    + +   ++
Sbjct: 650 KDAFEIVCRDPSLSAEEHQKIKTKVVEM-FKDRLDYL 685


>gi|94495557|ref|ZP_01302137.1| DNA helicase [Sphingomonas sp. SKA58]
 gi|94424945|gb|EAT09966.1| DNA helicase [Sphingomonas sp. SKA58]
          Length = 687

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 289/704 (41%), Positives = 436/704 (61%), Gaps = 21/704 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA +S F+GVG   +  L ++      +  R +D+ F+ P  ++DRH   +
Sbjct: 1   MRPDILNPLFAEISLFKGVGPALARPLERL------DLKRAVDVAFHLPVGWVDRHLTDR 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQK--RRPYKILLNDGTGE-ITLLFFYRKTEMLKNVF 117
           +      R   I G +     ++     R P+++L  DG G  + L++F + +   + + 
Sbjct: 55  LDMADAGR---IIGTLLTPVDYRAGGSARAPFRVLAADGQGNGVALVYFGKNSGWPRKLL 111

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
                  V+GK++     + +VHP ++    +    P  E+VY L  GL+ +  + +  +
Sbjct: 112 PLNEPKFVSGKLEAYGENLQIVHPDHVLPPEEADTVPARESVYGLSEGLTNNRMRDLAAQ 171

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           AL+R P LPEWIE  LL +K +P+  EA    H            PARERLAYDE+ AGQ
Sbjct: 172 ALARAPDLPEWIEPSLLARKGWPAWREALARAHADP------GDGPARERLAYDEIFAGQ 225

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL+L+R+  ++  G+ I  +G++   +   +PF+PT +Q  AI +I  DM+Q   MLR+
Sbjct: 226 LALMLVRQSSRRRRGVSIQGDGRLRAML--KLPFAPTGAQRRAIGEIEGDMAQATPMLRL 283

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL+A+  AVEAG Q  ++AP  ILA+QH++ ++K T    I + I+TG
Sbjct: 284 LQGDVGSGKTLVALMALLNAVEAGMQGAMLAPTEILARQHHDTLRKMTSGLPIEIAILTG 343

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 R   L  +A G   I++GTHA+FQ++++Y  L L ++DEQHRFGV QR+ L  K
Sbjct: 344 REKGKVREATLMGLADGSIDILVGTHAIFQEAVRYKALGLAVIDEQHRFGVAQRMMLANK 403

Query: 418 ATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           A   PH+L+MTATPIPRTL LT  G++D+S++ E P GR+PI+T+++  +R+DEV++ L 
Sbjct: 404 AERAPHLLVMTATPIPRTLTLTYYGEMDVSRLDEMPPGRQPIQTLVMAASRLDEVVDALA 463

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             +  G +AYW+CP +EE + S+  +   R  SL   F   + ++HGRM   +K++ M++
Sbjct: 464 RHVDGGGQAYWVCPLVEESETSDQAAAEARAESLRLRFGDRVGLVHGRMKGPEKDAAMEA 523

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F     ++L+ATTVIEVG+DV ++S+IIIE A+ FGLAQLHQLRGRVGRG++ S+C+LL 
Sbjct: 524 FAGNRTQILVATTVIEVGVDVPNSSLIIIEGADRFGLAQLHQLRGRVGRGDKSSTCLLLR 583

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
              L + S  RL++++ T DGF IAEEDLK R  GE+LG +QSG  +  +A PE   +L+
Sbjct: 584 GNALGETSRARLALMRETNDGFRIAEEDLKLRGAGEVLGTRQSGEAQLKLATPEHVAALV 643

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           + AR DA  ++ +D  L S RGQ+ R  LYL++ + A   +R G
Sbjct: 644 DAARDDANLLIERDGGLDSARGQAARTCLYLFEKDAAVGLLRGG 687


>gi|238750785|ref|ZP_04612283.1| ATP-dependent DNA helicase recG [Yersinia rohdei ATCC 43380]
 gi|238710929|gb|EEQ03149.1| ATP-dependent DNA helicase recG [Yersinia rohdei ATCC 43380]
          Length = 693

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 262/707 (37%), Positives = 392/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLST  GVG   +  L+K+            DLL + P  + DR    +
Sbjct: 1   MKGRLLDAV--PLSTLSGVGASQAGKLAKL------GLETIQDLLLHLPLRYEDRTQLYR 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++     VT+ G + + S     +RR     + DG+G +TL FF     M KN    G
Sbjct: 53  IGDLLPGLCVTVEGEVLR-SDISFGRRRMMTCQITDGSGVLTLRFFNFNAAM-KNSLSPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + +   G+ K+      ++HP Y  H           +  VY    G+     +K+I +A
Sbjct: 111 KHVIAYGEAKRGNTGPEIIHPEYRVHGENIGVELQESLTPVYPTTEGIRQATLRKLIDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L+ L   V+ E +  +L   +S  S+ EA + +H P       D E    PA+ RL  +E
Sbjct: 171 LAMLDTSVIAELLPIEL--SRSLISLPEAIHTLHRPPANIQLTDLEQGKHPAQRRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +    +P+  E  + Q+ L  +PF+PT +Q+  + +I QDM+   
Sbjct: 229 LLAHNLSMLAVRAGAQSYRALPLLAEDNLKQRFLAALPFTPTGAQQRVVAEIEQDMTHNY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V
Sbjct: 289 PMMRLIQGDVGSGKTLVAALAALRAIAQGKQVALMAPTELLAEQHANTFRQWLEPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E +A GQ  +++GTHA+FQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAVASGQVAMVVGTHAMFQEQVKFSGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            +VI+R+K   L EG++AYW+C  IEE +    ++       L        + ++HGRM 
Sbjct: 469 SDVIQRVKNACLEEGRQAYWVCTLIEESELLEAQAAEVTCEELRIALPEIKVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 529 GPEKQAVMLAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSTEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+H+  Q P+    R    R L    +Y  A
Sbjct: 649 ADLLRDQAMIPEVQRVARHLHQQYPE--HARALIERWLPERTRYTNA 693


>gi|319424728|gb|ADV52802.1| ATP-dependent DNA helicase RecG [Shewanella putrefaciens 200]
          Length = 691

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 256/696 (36%), Positives = 392/696 (56%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +S     T
Sbjct: 8   PITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALSPGSYGT 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG ++L FF       +N    G  I   G++++
Sbjct: 62  IEAEIQSTQIIQ-GRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYGEVRR 119

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             ++  +VHP Y + +  +DV+    +  +Y    GL    + K+  +AL  L    L E
Sbjct: 120 GSHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALVLLKEGGLTE 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLLM 243
            +   L  + +  S+ +A   +H P       D E    PA++RL  +ELLA  +++L +
Sbjct: 180 LLPPQL--QPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNLSMLRL 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++   +  + +   G++    L  +PF PT +Q+  + DI +D+ + + M+R++QGDVG
Sbjct: 238 RQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLVQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +    
Sbjct: 298 SGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGKLKGKA 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +K      
Sbjct: 358 RTQSLADIESGAAQMVIGTHAIFQQHVVFNKLALIIIDEQHRFGVHQRLGLREKGMSQGF 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R +EV+ER++  V
Sbjct: 418 HPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLERVRNAV 477

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++ ++AYW+C  IEE +    ++  +    L       +I ++HGR+   +K+ +M  F
Sbjct: 478 ITDQRQAYWVCTLIEESEVLECQAAEDTAEELRLALPDLNIGLVHGRLKSAEKQQIMADF 537

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 538 KAGMIHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIASHCVLLYK 597

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RLSVL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA      +L+ 
Sbjct: 598 APLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQALIP 657

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H++TQ P+   V    +R L +   Y +A
Sbjct: 658 HIQKLANHVMTQAPE--KVDAIILRWLGHRQHYVQA 691


>gi|77164722|ref|YP_343247.1| ATP-dependent DNA helicase RecG [Nitrosococcus oceani ATCC 19707]
 gi|76883036|gb|ABA57717.1| ATP-dependent DNA helicase RecG [Nitrosococcus oceani ATCC 19707]
          Length = 712

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 266/698 (38%), Positives = 389/698 (55%), Gaps = 23/698 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L  P++  +GVG   +  L+++         +  DLLF+ P  + DR     I  + + 
Sbjct: 24  ALDTPVTALKGVGPSLANRLARL------GLCKVQDLLFHLPQRYQDRTRVAPIGTLQKG 77

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           R   I G I Q    +  +RR     L+DGTG+I L FF+      +N    G ++   G
Sbjct: 78  REALIEGEI-QLCELRPGRRRSLLCSLSDGTGQIFLRFFHFSA-WQQNSLTPGARVCCFG 135

Query: 128 KIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--P 183
           ++++    + MVHP Y         V    +  VY    GL     + +I      L   
Sbjct: 136 ELRQGAAGLEMVHPDYRCLPEDRPTVTETYLTPVYPATEGLRQSSLRDLIQGVFKDLGEE 195

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIA 239
            + +++   LL+    P++ EA   +H P          E   PA++RLA++ELLA  ++
Sbjct: 196 GIIDYLPSGLLEGVGLPTLNEALIYLHQPPPDAPLNLLAEGKHPAQQRLAFEELLAHHLS 255

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L  +  +  +     ++ EG++ Q+ L  +PF  T +Q   +++IL DM+Q++ M R+LQ
Sbjct: 256 LRQLHLRASRLQAPLLSSEGQLQQRFLATLPFPLTAAQSQVVQEILADMAQESPMQRLLQ 315

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA +A+  AVEAG QAV+MAP  +LA+QH   ++ +    +I VE +T   
Sbjct: 316 GDVGSGKTVVAALAILQAVEAGYQAVLMAPTELLAEQHLRVLQGWFCPFEIRVEWLTAKR 375

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA- 418
               RR++LER+  G+  + +GTHALFQ+ + ++KL LV+VDEQHRFGV+QRL L +K  
Sbjct: 376 TTKARRESLERLEGGETPVAVGTHALFQEGVNFHKLGLVVVDEQHRFGVEQRLALREKGR 435

Query: 419 ---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +T+  D+D S I + P GR P+ T +    R DEV+ R+
Sbjct: 436 YGNCCPHQLIMTATPIPRTLAMTAYADLDTSVIDQLPPGRIPVATAVASDRRRDEVVARV 495

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           +    EG++AYW+C  IEE      ++  E    L E      I +IHGRM   +KE  M
Sbjct: 496 RRACREGRQAYWVCTLIEESDSLQAQAAEESAAELAEALPELCIGLIHGRMKTQEKERAM 555

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +FK+G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L
Sbjct: 556 AAFKSGDFHLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGAADSYCVL 615

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LYH PLS+ S  RL+ L+ T DGF IA  DL+ R  GE+LG +Q+G+P++ +A       
Sbjct: 616 LYHGPLSELSRARLACLRATNDGFEIARRDLELRGPGEVLGTRQTGLPQYRVANLMRDQE 675

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           LL    + A     + P    V     R L    +Y E
Sbjct: 676 LLVSVGQVADRFQQRYP--AQVASLIRRWLGEESRYGE 711


>gi|254433615|ref|ZP_05047123.1| ATP-dependent DNA helicase RecG [Nitrosococcus oceani AFC27]
 gi|207089948|gb|EDZ67219.1| ATP-dependent DNA helicase RecG [Nitrosococcus oceani AFC27]
          Length = 707

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 266/698 (38%), Positives = 389/698 (55%), Gaps = 23/698 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L  P++  +GVG   +  L+++         +  DLLF+ P  + DR     I  + + 
Sbjct: 19  ALDTPVTALKGVGPSLANRLARL------GLCKVQDLLFHLPQRYQDRTRVAPIGTLQKG 72

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           R   I G I Q    +  +RR     L+DGTG+I L FF+      +N    G ++   G
Sbjct: 73  REALIEGEI-QLCELRPGRRRSLLCSLSDGTGQIFLRFFHFSA-WQQNSLTPGARVCCFG 130

Query: 128 KIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--P 183
           ++++    + MVHP Y         V    +  VY    GL     + +I      L   
Sbjct: 131 ELRQGAAGLEMVHPDYRCLPEDRPTVTETYLTPVYPATEGLRQSSLRDLIQGVFKDLGEE 190

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIA 239
            + +++   LL+    P++ EA   +H P          E   PA++RLA++ELLA  ++
Sbjct: 191 GIIDYLPSGLLEGVGLPTLNEALIYLHQPPPDAPLNLLAEGKHPAQQRLAFEELLAHHLS 250

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L  +  +  +     ++ EG++ Q+ L  +PF  T +Q   +++IL DM+Q++ M R+LQ
Sbjct: 251 LRQLHLRASRLQAPLLSSEGQLQQRFLATLPFPLTAAQSQVVQEILADMAQESPMQRLLQ 310

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA +A+  AVEAG QAV+MAP  +LA+QH   ++ +    +I VE +T   
Sbjct: 311 GDVGSGKTVVAALAILQAVEAGYQAVLMAPTELLAEQHLRVLQGWFCPFEIRVEWLTAKR 370

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA- 418
               RR++LER+  G+  + +GTHALFQ+ + ++KL LV+VDEQHRFGV+QRL L +K  
Sbjct: 371 TTKARRESLERLEGGETPVAVGTHALFQEGVNFHKLGLVVVDEQHRFGVEQRLALREKGR 430

Query: 419 ---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +T+  D+D S I + P GR P+ T +    R DEV+ R+
Sbjct: 431 YGNCCPHQLIMTATPIPRTLAMTAYADLDTSVIDQLPPGRIPVATAVASDRRRDEVVARV 490

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           +    EG++AYW+C  IEE      ++  E    L E      I +IHGRM   +KE  M
Sbjct: 491 RRACREGRQAYWVCTLIEESDSLQAQAAEESAAELAEALPELCIGLIHGRMKTQEKERAM 550

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +FK+G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L
Sbjct: 551 AAFKSGDFHLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGAADSYCVL 610

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LYH PLS+ S  RL+ L+ T DGF IA  DL+ R  GE+LG +Q+G+P++ +A       
Sbjct: 611 LYHGPLSELSRARLACLRATNDGFEIARRDLELRGPGEVLGTRQTGLPQYRVANLMRDQE 670

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           LL    + A     + P    V     R L    +Y E
Sbjct: 671 LLVSVGQVADRFQQRYP--AQVASLIRRWLGEESRYGE 706


>gi|83648946|ref|YP_437381.1| ATP-dependent DNA helicase RecG [Hahella chejuensis KCTC 2396]
 gi|83636989|gb|ABC32956.1| ATP-dependent DNA helicase RecG [Hahella chejuensis KCTC 2396]
          Length = 688

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 249/679 (36%), Positives = 391/679 (57%), Gaps = 23/679 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +  PL+  +GVG   +  L+K+            DLLF+ P  + DR     ++++    
Sbjct: 3   IEQPLTELKGVGPALAEKLAKL------GLHTVQDLLFHLPLRYEDRTRVTPVAQVRVGM 56

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              +   +   S  +L ++R   + + D +GEI L F+Y  T   KN F  GRK    G+
Sbjct: 57  PAQVEATVVD-SRVELGRKRSLLVRVRDDSGEIGLRFYYF-TAQQKNRFSPGRKFLCYGE 114

Query: 129 IKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
            +  ++ + M HP     +          +  +Y    GL     + +  +AL+ +   P
Sbjct: 115 ARLGRSGLEMYHPETTQVDELKPAEMEQRLTPIYPTTEGLMQKRLRDLCQQALTLMRRYP 174

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240
             +W+ ++L      P +  A + +H+P    +     E   P ++RL  +ELLA  ++L
Sbjct: 175 IKDWLPQELRSHYQMPELNAALDYLHHPPVGANVTALAESRHPNQQRLVAEELLAHHLSL 234

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +R++ + +    +   G + Q+ +  +PF+ T +Q+  I +I QD+     MLR++QG
Sbjct: 235 LQLRQEVQSQPAPALRA-GVLQQRFIEQLPFALTGAQKRVIGEIEQDVRAMVPMLRLVQG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA  +   A+EAG QA +MAP  IL++QHY+ + ++ +   + V  + G + 
Sbjct: 294 DVGSGKTVVAAASALCAIEAGHQAALMAPTEILSEQHYKTLSQWLEPLGVSVVWLNGKLK 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            + R+K L+ I+ G A + IGTHALFQD +++ +L L I+DEQHRFGV QRL L +K   
Sbjct: 354 ASERQKVLDAISSGAAQLAIGTHALFQDQVEFARLGLAIIDEQHRFGVHQRLSLREKGAR 413

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +++  D+D S I E P GR P+ T +IP  + D+V+ER++
Sbjct: 414 SGQAPHQLIMTATPIPRTLAMSAYADLDTSVIDELPPGRTPVVTAVIPDIKRDDVVERVR 473

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
            V  EG++AYW+C  IEE +    ++      +L E      + ++HGRM   +K +VMD
Sbjct: 474 KVCLEGRQAYWVCTLIEESEVLQCQAAEATAANLAEALPDLRVGLVHGRMKAAEKTAVMD 533

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L+
Sbjct: 534 DFKHNRLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSHESYCVLM 593

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YHPPLS     R+ V++++ DGF+IAE+DL+ R  GE+LG +Q+G+ +F IA  +     
Sbjct: 594 YHPPLSLAGKARMQVMRDSNDGFVIAEKDLEIRGPGEVLGTRQTGLIQFRIADLQRDRQW 653

Query: 656 LEIARKDAKHILTQDPDLT 674
           L + ++ A  ++ Q PD+T
Sbjct: 654 LPVVKEMALSVIDQ-PDVT 671


>gi|114327498|ref|YP_744655.1| ATP-dependent DNA helicase recG [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315672|gb|ABI61732.1| ATP-dependent DNA helicase recG [Granulibacter bethesdensis
           CGDNIH1]
          Length = 685

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 288/701 (41%), Positives = 423/701 (60%), Gaps = 17/701 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M     + LFAPL++  G+G   +  L K          R +DLLF+ P  F  R     
Sbjct: 1   MESDPFSTLFAPLTSLPGIGPTLAPLLEK-----ACGGPRVLDLLFHLPDGFTRRTAISA 55

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFE 119
           + E     +VTI   +  H +    +R+P+++ + D  G E  ++FF R      +    
Sbjct: 56  LREAQPGTVVTIALDVVAHHAPAT-RRQPWRVKVMDREGCEADIVFFSRARL---DRLPI 111

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G ++ V+GK  +   +I   HP +I   +Q    P IE V+ L  GL     ++ + EAL
Sbjct: 112 GTRVAVSGKADRFGEKITFPHPDHIVPITQMDTIPAIEPVWPLTAGLFPGQIRRALKEAL 171

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             LP  PEWI+  LL KKS+P    A + +H P +  D         RLAYDEL A Q+A
Sbjct: 172 GCLPDFPEWIDPHLLAKKSWPCFGAALHALHQPEQIPDQSPHD----RLAYDELFAHQLA 227

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +  M+++ ++  G  ++ +  + ++ L       T SQ  A+ +I  DM+   RMLR+LQ
Sbjct: 228 MAWMKRRERQRPGRSLSGDNTLREEALIRFGKPMTGSQLQALSEIDGDMAAPRRMLRLLQ 287

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKTLVAL+AM  AVEAG QA +MAP  +LAQQHY  + K    + + V ++TG++
Sbjct: 288 GDVGAGKTLVALMAMLRAVEAGTQAAMMAPTELLAQQHYRTLSKL---SPVQVGLLTGSV 344

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR  L  I  G+  II+GTHALFQDS+QY  L L ++DEQHRFGV+QR  L  K +
Sbjct: 345 KGVARRNLLLGIQAGRIKIIVGTHALFQDSVQYRDLGLAVIDEQHRFGVEQRGMLGSKGS 404

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL+MTATPIPRTL+LT  G++D+S++TEKPAGR+PI+T + P++++D VI+ +   L
Sbjct: 405 RTDVLVMTATPIPRTLLLTQWGEMDVSRLTEKPAGRQPIRTTLHPLSKLDAVIDGIGRAL 464

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +G + YW+CP + E   S+  +  ERF  L   F   + + HG+    ++E+ +  F  
Sbjct: 465 DKGDRVYWVCPLVSESAVSDMAAAEERFAVLRARFGEKVGLAHGQQDSAEREAALSEFAA 524

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   LL+ATTV+EVG+DV +ASI+++E+AE FGLAQLHQLRGRVGRG   S C+LL+   
Sbjct: 525 GRTSLLVATTVVEVGVDVPEASIMVVEHAERFGLAQLHQLRGRVGRGAAASFCLLLHEDG 584

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           +S+ +  RL++L++TEDGFLIA+ED + R  G++LG +QSG+P + +A  + H +LL IA
Sbjct: 585 MSETARRRLTLLRDTEDGFLIADEDFRLRGGGDLLGKRQSGLPSWRLADTDRHAALLRIA 644

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            +DA ++L QDP LT  RG + R LL L+   +A + + AG
Sbjct: 645 SRDAAYLLDQDPGLTGPRGLAARSLLRLFGRGDALRNLDAG 685


>gi|326389531|ref|ZP_08211098.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter ethanolicus JW
           200]
 gi|325994536|gb|EGD52961.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter ethanolicus JW
           200]
          Length = 681

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 257/691 (37%), Positives = 390/691 (56%), Gaps = 18/691 (2%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL   +   +GVG K +  L K+            DLLFY P  + +R    KI ++   
Sbjct: 2   PLNLDIQYVKGVGPKRAKLLKKL------GINTVEDLLFYFPKDYENRSDILKIEDLKVG 55

Query: 68  RIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              T  GYI+      +  K    K+ + DGTG + L+++ +    +KN F  G +  + 
Sbjct: 56  EKQTFRGYIAGSPREIKTSKVIITKVPVKDGTGAVELVWYNQ--PYIKNNFKIGEEYIIN 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVL 185
           GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL   +  +
Sbjct: 114 GKLQFKYGQLIVENPVLEKSEDFKLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEV 173

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+AL LM++
Sbjct: 174 EEFFDEEFLSEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMALFLMKR 230

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++QGDVGSG
Sbjct: 231 SVKGKKGIKF--ERVELKPFLMGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQGDVGSG 288

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  ++++
Sbjct: 289 KTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYHTLKELFRNTDIKIGLLSGSISPSNKK 348

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE+I +G   I++GTHAL +D++ +  L L I DEQHRFGV+QR  LTQK   P VL+
Sbjct: 349 EVLEKIKNGDYDIVVGTHALIEDNVIFNNLGLCITDEQHRFGVRQRALLTQKGENPDVLV 408

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +G++ 
Sbjct: 409 MTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQV 468

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE  + N  S    +  ++E     + + ++HG+M+D DKE VM+ F NG   
Sbjct: 469 YVVCPLIEESDKINAMSAEIVYREIYEDAFKEAKVGLLHGKMTDSDKEKVMEEFVNGKID 528

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++I+ENAE FGLAQLHQLRGRVGR E  S CIL+ +   S  
Sbjct: 529 ILVSTTVIEVGVNVPNATVMIVENAERFGLAQLHQLRGRVGRSEFQSYCILISYSN-SDI 587

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL VL  T DGF IAE+DL+ R  GE LG++Q G+P+F IA       +L+  +KD 
Sbjct: 588 AKKRLGVLAQTSDGFKIAEKDLEIRGPGEFLGLRQHGLPEFKIANIFEDIDILKTVQKDV 647

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           + +L +DP L +       +L   YQ  E  
Sbjct: 648 EELLEKDPKLENHPKLKSILLNQFYQKLEGI 678


>gi|304411703|ref|ZP_07393315.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS183]
 gi|307306245|ref|ZP_07585990.1| ATP-dependent DNA helicase RecG [Shewanella baltica BA175]
 gi|304349891|gb|EFM14297.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS183]
 gi|306911118|gb|EFN41545.1| ATP-dependent DNA helicase RecG [Shewanella baltica BA175]
          Length = 691

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 252/696 (36%), Positives = 390/696 (56%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +      T
Sbjct: 8   PITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGSYGT 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG ++L FF       +N    G  I   G++++
Sbjct: 62  IEAEIQSTQIIQ-GRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYGEVRR 119

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             ++  +VHP Y + +  +DV+    +  +Y    GL    + K+  +AL  L    L E
Sbjct: 120 GGHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALVLLEDGGLTE 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLLM 243
            +   L  + +  S+ +A   +H P       D E    PA++RL  +ELLA  +++L +
Sbjct: 180 LLPPQL--QPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNLSMLRL 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++   +  + +   G++    L  +PF PT +Q+  + DI +D+ + + M+R++QGDVG
Sbjct: 238 RQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLVQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +    
Sbjct: 298 SGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGKLKGKA 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +    +  
Sbjct: 358 RAQSLADIESGAAQMVIGTHAIFQQHVVFNKLALIIIDEQHRFGVHQRLGLREKGVSQGF 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R +EV+ER++  V
Sbjct: 418 HPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLERVRNAV 477

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++ ++AYW+C  IEE +    ++  +    L       +I ++HGR+   +K+ +M  F
Sbjct: 478 ITDKRQAYWVCTLIEESEVLECQAAEDTAEELRLALPELNIGLVHGRLKSAEKQQIMADF 537

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 538 KAGIIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHCVLLYK 597

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RLSVL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA      +L+ 
Sbjct: 598 APLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQALIP 657

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H++ Q P+   V    +R L +   Y +A
Sbjct: 658 HIQKLANHVMAQAPE--KVDAIILRWLGHKQHYVQA 691


>gi|89076059|ref|ZP_01162419.1| putative ATP-dependent DNA helicase RecG [Photobacterium sp. SKA34]
 gi|89048211|gb|EAR53793.1| putative ATP-dependent DNA helicase RecG [Photobacterium sp. SKA34]
          Length = 693

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 267/707 (37%), Positives = 398/707 (56%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    LN +   L+   GVG K +  L KI            DLLF+ P  + DR     
Sbjct: 1   MSGQLLNTI--SLAELSGVGAKMAEKLEKI------GLHNVQDLLFHLPLRYEDRTRIWP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+     + +T+ G +  H+S    KR+   + + DGTG +TL FF     M KN F EG
Sbjct: 53  INRAMPGQHLTVQGEV-HHTSITFGKRKMLAVKIGDGTGSVTLRFFNFNAAM-KNSFAEG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++   G+IK  K  + ++HP Y   +          +  VY    GL     + +  +A
Sbjct: 111 KQVKAYGEIKGSKFGLEIIHPDYRIFSEPTELSVEETLTPVYPTTDGLRQLTLRNLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E + + L  ++   ++A+A   +H P      +       PA+ RL  +E
Sbjct: 171 LNLLDKAAVTELLPEGLYDRQ--MTLAQALRAMHRPTPDISLDQLEAGKHPAQHRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R + ++    P+  +  + Q++L ++PFSPT +Q+  + DI  D+ +  
Sbjct: 229 LLAQNLSMLALRSKGQQHSAWPLAAKDSLKQQLLNSLPFSPTGAQQRVVADIEADLIKPQ 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIEHGFQVALMAPTELLAEQHAINFANWFNPMGIQV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R   L RIA G+  +++GTHALFQD +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWMAGKLKGKARETELARIASGEVKMVVGTHALFQDHVKFENLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQK----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           +L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR PI+TV +P  R 
Sbjct: 409 ELREKGANEGRYPHQLVMTATPIPRTLAMTAYADMDTSVIDELPPGRTPIQTVALPDARR 468

Query: 469 DEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+IER+    ++EG++AYW+C  I+E +    ++  +  + L        I ++HGRM 
Sbjct: 469 PEIIERILSACVNEGRQAYWVCTLIDESEVLEAQAASDTADELTGLLPDLKIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS+++IEN E  GLAQLHQLRGRVGRG
Sbjct: 529 AAEKQAVMASFKAGELNLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
           +  S C+LLYH PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+ +F +
Sbjct: 589 KVASHCVLLYHAPLSKTAQKRLGVLRESSDGFVIAQRDLEIRGPGELLGTKQTGIAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A       ++   +K A++I    PD  + +    R L     Y+ A
Sbjct: 649 ADLIRDQYMIPQVQKLARYIHDSYPD--NAKAIIDRWLGQRENYSNA 693


>gi|217971561|ref|YP_002356312.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS223]
 gi|217496696|gb|ACK44889.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS223]
          Length = 691

 Score =  598 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 253/696 (36%), Positives = 390/696 (56%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +      T
Sbjct: 8   PITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGSYGT 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG ++L FF       +N    G  I   G++++
Sbjct: 62  IEAEIQSTQIIQ-GRKRMLVCNVRDDTGSLSLRFFNFSIAQ-RNAMQNGLMIRAYGEVRR 119

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             ++  +VHP Y + +  +DV+    +  +Y    GL    + K+  +AL  L    L E
Sbjct: 120 GGHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALVLLEDGGLTE 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLLM 243
            +   L  + +  S+ +A   +H P       D E    PA++RL  +ELLA  +++L +
Sbjct: 180 LLPPQL--QPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNLSMLRL 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++   +  + +   G++    L  +PF PT +Q+  + DI +D+ Q + M+R++QGDVG
Sbjct: 238 RQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEQPHPMMRLVQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +    
Sbjct: 298 SGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGKLKGKA 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +    +  
Sbjct: 358 RAQSLADIESGAAQMVIGTHAIFQQHVVFNKLALIIIDEQHRFGVHQRLGLREKGVSQGF 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R +EV+ER++  V
Sbjct: 418 HPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLERVRNAV 477

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++ ++AYW+C  IEE +    ++  +    L       +I ++HGR+   +K+ +M  F
Sbjct: 478 ITDKRQAYWVCTLIEESEVLECQAAEDTAEELRLALPELNIGLVHGRLKSAEKQQIMADF 537

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 538 KAGIIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHCVLLYK 597

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RLSVL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA      +L+ 
Sbjct: 598 APLSNTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQALIP 657

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H++ Q P+   V    +R L +   Y +A
Sbjct: 658 HIQKLANHVMAQAPE--KVDAIILRWLGHKQHYVQA 691


>gi|126172599|ref|YP_001048748.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS155]
 gi|125995804|gb|ABN59879.1| ATP-dependent DNA helicase RecG [Shewanella baltica OS155]
          Length = 696

 Score =  598 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 252/696 (36%), Positives = 390/696 (56%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +      T
Sbjct: 13  PITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGSYGT 66

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG ++L FF       +N    G  I   G++++
Sbjct: 67  IEAEIQSTQIIQ-GRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYGEVRR 124

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             ++  +VHP Y + +  +DV+    +  +Y    GL    + K+  +AL  L    L E
Sbjct: 125 GGHQAEIVHPEYKVVYPGEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALVLLEDGGLTE 184

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLLM 243
            +   L  + +  S+ +A   +H P       D E    PA++RL  +ELLA  +++L +
Sbjct: 185 LLPPQL--QPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNLSMLRL 242

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++   +  + +   G++    L  +PF PT +Q+  + DI +D+ + + M+R++QGDVG
Sbjct: 243 RQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVADIGKDLEKPHPMMRLVQGDVG 302

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +    
Sbjct: 303 SGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGKLKGKV 362

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +    +  
Sbjct: 363 RAQSLADIESGAAQMVIGTHAIFQQHVVFSKLALIIIDEQHRFGVHQRLGLREKGVSQGF 422

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R +EV+ER++  V
Sbjct: 423 HPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLERVRNAV 482

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++ ++AYW+C  IEE +    ++  +    L       +I ++HGR+   +K+ +M  F
Sbjct: 483 ITDKRQAYWVCTLIEESEVLECQAAEDTAEELRLALPELNIGLVHGRLKSAEKQQIMADF 542

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 543 KAGIIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAIASHCVLLYK 602

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RLSVL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA      +L+ 
Sbjct: 603 APLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQALIP 662

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H++ Q P+   V    +R L +   Y +A
Sbjct: 663 HIQKLANHVMAQAPE--KVDAIILRWLGHKQHYVQA 696


>gi|283836030|ref|ZP_06355771.1| ATP-dependent DNA helicase RecG [Citrobacter youngae ATCC 29220]
 gi|291068214|gb|EFE06323.1| ATP-dependent DNA helicase RecG [Citrobacter youngae ATCC 29220]
          Length = 693

 Score =  598 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 261/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL+T  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MKGRLLDAI--PLNTLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +LLQ     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIAELLPPELLQ--GMMSLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P+N + ++  ++L  +PF PT +Q     +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLNPDDRLKNQLLAALPFKPTGAQARVTAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRSWFEPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 SDIIDRVRNACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+SVM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQSVMAAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGTAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P          R +    +Y+ A
Sbjct: 649 ADLLRDQAIIPEVQRIARHIHERYP--QQAEALIERWMPETERYSNA 693


>gi|126658566|ref|ZP_01729713.1| DNA recombinase [Cyanothece sp. CCY0110]
 gi|126620153|gb|EAZ90875.1| DNA recombinase [Cyanothece sp. CCY0110]
          Length = 819

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 244/688 (35%), Positives = 396/688 (57%), Gaps = 29/688 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   LST   VG K +  L ++            DLLFY+P   ID   +  I+ +    
Sbjct: 122 LEQSLSTLAEVGYKRAELLKRL------GLYTVKDLLFYYPRDHIDYARQVTINNLVAGE 175

Query: 69  IVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEM--------LKNVF 117
            VTI G + + + F   K +   I   +L D TG+I L  F+  T           K ++
Sbjct: 176 TVTIVGTVKRCNCFTSPKNKKLSIFELILRDHTGQIKLNRFFAGTRFTSRGWQERQKRIY 235

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFK 172
             G  +  +G +K+ +  I + +P     +S     + +    +  VY L  G+  DL +
Sbjct: 236 PLGSTVAASGLVKQNRYGITLDNPEIEVLDSVGSSIESIKIGRVLPVYPLTEGVGADLIR 295

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           K I+ +L  +  L + + + L ++     + EA + IH P  +   E  + AR RL +DE
Sbjct: 296 KAIIVSLEAIKQLRDPLPRVLREQYGLMGLKEAISNIHFPETS---ELLAHARRRLVFDE 352

Query: 233 LLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
               Q+  L  R+ Q +         +G++ ++    +PFS T +Q+  I +IL+D++  
Sbjct: 353 FFYLQLGFLQRRQEQKQIHNSTVFTPKGRLIEQFDNILPFSLTNAQQRVINEILEDLNSV 412

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVG+GKT+VA+ A+ AA+++G QA +MAP  +LA+QHY  +  +     + 
Sbjct: 413 TPMNRLVQGDVGAGKTIVAVFAVLAALQSGYQAALMAPTEVLAEQHYRKLIPWFNQLYLP 472

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++TG+  +A R +   ++  G+  +++GTHAL QD++ + KL LV++DEQHRFGVQQR
Sbjct: 473 VELLTGSTKKAKREEIHRQLITGELPLLVGTHALIQDTVNFQKLGLVVIDEQHRFGVQQR 532

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            KL  K  +PHVL MTATPIPRTL LT  GD+D+S+I E P GR+ I+T ++      + 
Sbjct: 533 AKLLAKGKSPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQAIQTTVLTGKERTQA 592

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDID 529
            + ++  +++G++ Y I P IEE ++ + ++ VE    L +      +I ++HGRMS ++
Sbjct: 593 YDLIRREVAQGRQVYIIFPMIEESEKLDVKAAVEEHKKLSDKVFPDFNIGLLHGRMSSVE 652

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+ V+ +F++    ++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   
Sbjct: 653 KDGVLTAFRDNKYHIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGSHK 712

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+     + ++  RLSVL+ ++DGF I+E DL+ R  G +LG +QSG+P F +A  
Sbjct: 713 SYCLLMSSSK-TPDARQRLSVLEQSQDGFFISEMDLRFRGPGTVLGTRQSGLPDFALASL 771

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVR 677
                +LE+AR  A+ I+  D +L S+ 
Sbjct: 772 IEDQEVLELARVAAEKIIAADKNLGSLP 799


>gi|269965887|ref|ZP_06179980.1| ATP-dependent DNA helicase RecG [Vibrio alginolyticus 40B]
 gi|269829440|gb|EEZ83681.1| ATP-dependent DNA helicase RecG [Vibrio alginolyticus 40B]
          Length = 693

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 262/696 (37%), Positives = 398/696 (57%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F +G+ +   G+IK+
Sbjct: 64  VQGKVMAVDTI-FGKRKMLTVKISDGNGTITLRFFNF-TAAMKNNFTQGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F+ S+        +  VY    GL     + +  +AL+ L    + E
Sbjct: 122 GGMGLEIVHPDYKFYVSEQKPDVEQSLTPVYPTTDGLRQITLRNLTEQALALLDKTAVQE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L   +   S  +A + IH P    +     E   PA+ RL  +ELLA  +++L +
Sbjct: 182 LLPAGLYDHQITMS--QALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + +K+  +P+    K+  ++L  +PFSPT +Q   +++I  D+ + + M+R++QGDVG
Sbjct: 240 RSKGQKDSALPLGPCNKLKTQLLAQLPFSPTNAQTRVVQEIEADLEKPHPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAAVRAIEHGHQVALMAPTELLAEQHAINFANWFETMGIQVGWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           +   L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 360 KEAELARIASGEAKMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQGA 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++   
Sbjct: 420 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 480 LNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQDF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 540 KDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 600 SPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGIADFKIADLVRDQRLIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             ++ A+HI    P  T+      R L     Y++A
Sbjct: 660 EVQRIARHIHDNYP--TNATAIIDRWLGERDIYSKA 693


>gi|28896931|ref|NP_796536.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837892|ref|ZP_01990559.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus AQ3810]
 gi|260895519|ref|ZP_05904015.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus Peru-466]
 gi|28805139|dbj|BAC58420.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748755|gb|EDM59600.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus AQ3810]
 gi|308088485|gb|EFO38180.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus Peru-466]
          Length = 693

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/674 (38%), Positives = 392/674 (58%), Gaps = 24/674 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F +G+ +   G+IK+
Sbjct: 64  VQGKVMTVDTI-FGKRKMLTVKISDGNGTITLRFFNF-TAAMKNNFSQGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F+ S+        +  VY    GL     + +  +AL+ L    + E
Sbjct: 122 GGMGLEIVHPDYKFYASEQKPDVEQSLTPVYPTTDGLRQITLRNLTEQALALLDKAAVQE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L   +   S  +A + IH P    +     E   PA+ RL  +ELLA  +++L +
Sbjct: 182 LLPSGLYNHQITMS--QALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + +++I +P+    K+ +++L  +PFSPT +Q   +K+I  D+ + + M+R++QGDVG
Sbjct: 240 RSKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIESDLEKPHPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           +   L RIA G+A +I+GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 360 KETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQGA 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++   
Sbjct: 420 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 480 LNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 540 KDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 600 SPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLIP 659

Query: 658 IARKDAKHILTQDP 671
             ++ A+HI    P
Sbjct: 660 EVQRIARHIHDNYP 673


>gi|308094586|ref|ZP_05890187.2| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus AN-5034]
 gi|308125968|ref|ZP_05778375.2| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus K5030]
 gi|308089992|gb|EFO39687.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus AN-5034]
 gi|308113429|gb|EFO50969.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus K5030]
          Length = 689

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/674 (38%), Positives = 392/674 (58%), Gaps = 24/674 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 6   PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 59

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F +G+ +   G+IK+
Sbjct: 60  VQGKVMTVDTI-FGKRKMLTVKISDGNGTITLRFFNF-TAAMKNNFSQGKLVHAYGEIKR 117

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F+ S+        +  VY    GL     + +  +AL+ L    + E
Sbjct: 118 GGMGLEIVHPDYKFYASEQKPDVEQSLTPVYPTTDGLRQITLRNLTEQALALLDKAAVQE 177

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L   +   S  +A + IH P    +     E   PA+ RL  +ELLA  +++L +
Sbjct: 178 LLPSGLYNHQITMS--QALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAV 235

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + +++I +P+    K+ +++L  +PFSPT +Q   +K+I  D+ + + M+R++QGDVG
Sbjct: 236 RSKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIESDLEKPHPMMRLVQGDVG 295

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 296 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGKA 355

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           +   L RIA G+A +I+GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 356 KETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQGA 415

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++   
Sbjct: 416 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNAC 475

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 476 LNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQEF 535

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 536 KDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 595

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 596 SPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLIP 655

Query: 658 IARKDAKHILTQDP 671
             ++ A+HI    P
Sbjct: 656 EVQRIARHIHDNYP 669


>gi|323494589|ref|ZP_08099693.1| ATP-dependent DNA helicase RecG [Vibrio brasiliensis LMG 20546]
 gi|323311192|gb|EGA64352.1| ATP-dependent DNA helicase RecG [Vibrio brasiliensis LMG 20546]
          Length = 692

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 260/675 (38%), Positives = 391/675 (57%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLTSLTGVGAKVAEKLAKV------GLNSVQDLLFHLPLRYEDRTRIYPIVKLHAGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMSVDTL-FGKRKMLTVKISDGNGTITLRFFNF-TAAMKNNFAEGKTVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F   N        +  VY    GL     + +  +AL  L    + E
Sbjct: 121 GGYGLEIVHPDYKFYAPNQSAEVEQSLTPVYPTTDGLRQITLRNLTDQALELLDKAAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            +   L   ++  ++ +A + IH P  + D +       PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDHQT--TLTQALHTIHRPPPSIDLDQFDQGKHPAQIRLIIEELLAQNLSMLSV 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + +++  +P+ V  K+ Q++L  +PFSPT +Q   +++I QD+ + + M+R++QGDVG
Sbjct: 239 RSKGQQDAALPLPVANKLKQQLLDQLPFSPTNAQSRVVEEIEQDLVKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 299 SGKTLVAALAALRALEHGYQVALMAPTELLAEQHAINFANWFEPMGIKVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           +   L +IA G+A +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 KEAELTKIASGEAQMVVGTHALFQEHVEFDHLALVIIDEQHRFGVHQRLELREKGAKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++   
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQDF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 539 KDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+GM  F IA       L+ 
Sbjct: 599 SPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGMADFKIADLVRDQRLIP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI    PD
Sbjct: 659 EVQRIARHIHDNYPD 673


>gi|22124025|ref|NP_667448.1| ATP-dependent DNA helicase RecG [Yersinia pestis KIM 10]
 gi|45439902|ref|NP_991441.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51594391|ref|YP_068582.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis IP
           32953]
 gi|108809497|ref|YP_653413.1| ATP-dependent DNA helicase RecG [Yersinia pestis Antiqua]
 gi|108813974|ref|YP_649741.1| ATP-dependent DNA helicase RecG [Yersinia pestis Nepal516]
 gi|145601109|ref|YP_001165185.1| ATP-dependent DNA helicase RecG [Yersinia pestis Pestoides F]
 gi|150260900|ref|ZP_01917628.1| ATP-dependent DNA helicase [Yersinia pestis CA88-4125]
 gi|162419548|ref|YP_001604682.1| ATP-dependent DNA helicase RecG [Yersinia pestis Angola]
 gi|165926091|ref|ZP_02221923.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165936250|ref|ZP_02224819.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166011481|ref|ZP_02232379.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213734|ref|ZP_02239769.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167402096|ref|ZP_02307573.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419330|ref|ZP_02311083.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167426678|ref|ZP_02318431.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167468212|ref|ZP_02332916.1| ATP-dependent DNA helicase RecG [Yersinia pestis FV-1]
 gi|170026387|ref|YP_001722892.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis YPIII]
 gi|186893378|ref|YP_001870490.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis PB1/+]
 gi|218927257|ref|YP_002345132.1| ATP-dependent DNA helicase RecG [Yersinia pestis CO92]
 gi|229836147|ref|ZP_04456315.1| ATP-dependent DNA helicase [Yersinia pestis Pestoides A]
 gi|229839885|ref|ZP_04460044.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229841967|ref|ZP_04462122.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229904504|ref|ZP_04519615.1| ATP-dependent DNA helicase [Yersinia pestis Nepal516]
 gi|270488504|ref|ZP_06205578.1| ATP-dependent DNA helicase RecG [Yersinia pestis KIM D27]
 gi|294502144|ref|YP_003566206.1| ATP-dependent DNA helicase [Yersinia pestis Z176003]
 gi|21956768|gb|AAM83699.1|AE013610_11 DNA helicase [Yersinia pestis KIM 10]
 gi|45434757|gb|AAS60318.1| ATP-dependent DNA helicase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51587673|emb|CAH19273.1| ATP-dependent DNA helicase [Yersinia pseudotuberculosis IP 32953]
 gi|108777622|gb|ABG20141.1| ATP-dependent DNA helicase RecG [Yersinia pestis Nepal516]
 gi|108781410|gb|ABG15468.1| ATP-dependent DNA helicase RecG [Yersinia pestis Antiqua]
 gi|115345868|emb|CAL18726.1| ATP-dependent DNA helicase [Yersinia pestis CO92]
 gi|145212805|gb|ABP42212.1| ATP-dependent DNA helicase RecG [Yersinia pestis Pestoides F]
 gi|149290308|gb|EDM40385.1| ATP-dependent DNA helicase [Yersinia pestis CA88-4125]
 gi|162352363|gb|ABX86311.1| ATP-dependent DNA helicase RecG [Yersinia pestis Angola]
 gi|165915864|gb|EDR34472.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921951|gb|EDR39128.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165989627|gb|EDR41928.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205136|gb|EDR49616.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963324|gb|EDR59345.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167048471|gb|EDR59879.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167054367|gb|EDR64184.1| ATP-dependent DNA helicase RecG [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169752921|gb|ACA70439.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis YPIII]
 gi|186696404|gb|ACC87033.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis PB1/+]
 gi|229678622|gb|EEO74727.1| ATP-dependent DNA helicase [Yersinia pestis Nepal516]
 gi|229690277|gb|EEO82331.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696251|gb|EEO86298.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229706595|gb|EEO92601.1| ATP-dependent DNA helicase [Yersinia pestis Pestoides A]
 gi|262360223|gb|ACY56944.1| ATP-dependent DNA helicase [Yersinia pestis D106004]
 gi|262364169|gb|ACY60726.1| ATP-dependent DNA helicase [Yersinia pestis D182038]
 gi|270337008|gb|EFA47785.1| ATP-dependent DNA helicase RecG [Yersinia pestis KIM D27]
 gi|294352603|gb|ADE62944.1| ATP-dependent DNA helicase [Yersinia pestis Z176003]
 gi|320013390|gb|ADV96961.1| ATP-dependent DNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 693

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 264/707 (37%), Positives = 396/707 (56%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLST  GVG   +  L+KI            DLL + P  + DR    +
Sbjct: 1   MKGRLLDAV--PLSTLSGVGASQAGKLAKI------GLETIQDLLLHLPLRYEDRTRLYR 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++     VT+ G + + S     +RR     ++DG+G +TL FF     M KN    G
Sbjct: 53  IGDLLPGLSVTVEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + +   G+ K+  N   ++HP Y  H           +  VY    G+     +K+I +A
Sbjct: 111 KHVIAYGEAKRGNNGPEIIHPEYRVHGENIGVELQESLTPVYPTTEGIRQATLRKLIDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L+ L   V+ E +  +L   +S  S+ EA + +H P       D E    PA+ RL  +E
Sbjct: 171 LAMLDTCVIAELLPIEL--SRSLISLPEAIHTLHRPPADIQLADLEQGKHPAQRRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +    +P+  E ++ Q+ L  +PF+PT++Q+  + +I +DM+Q  
Sbjct: 229 LLAHNLSMLAVRAGAQSYRALPLMAEEQLKQRFLAALPFTPTQAQQRVVAEIERDMTQSF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +     V
Sbjct: 289 PMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHATTFRQWLEPLGFSV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E +A GQ  ++IGTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAVASGQVSMVIGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 TLWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            +VI+R+K   L EG++AYW+C  IEE +    ++       L        + ++HGRM 
Sbjct: 469 SDVIQRVKNACLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+++M +FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 529 GPEKQAIMLAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+H+  Q P+    +    R L    +Y  A
Sbjct: 649 ADLLRDQAMIPEVQRVARHLHQQYPE--HAKALIERWLPERVRYTNA 693


>gi|94499884|ref|ZP_01306420.1| ATP-dependent DNA helicase RecG [Oceanobacter sp. RED65]
 gi|94428085|gb|EAT13059.1| ATP-dependent DNA helicase RecG [Oceanobacter sp. RED65]
          Length = 695

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 243/668 (36%), Positives = 375/668 (56%), Gaps = 21/668 (3%)

Query: 4   SFLNPL-FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           + L+ L   P++  + VG   +  L+K+            DL F+ P  + DR     I 
Sbjct: 3   AVLDSLVETPVTALKNVGPAMAEKLAKL------GIHNVQDLAFHLPLRYQDRTRITPIG 56

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            +     V + G I + +     KRR   + + DGTG +TL FF+      KN   +G +
Sbjct: 57  GLRANLDVVVEGDI-KAADVVFGKRRSLVVRIQDGTGTLTLRFFHFSAAQ-KNKLKKGER 114

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           I   G+ +  K+ + + HP Y F +          +  +Y    GL+   +++++ + ++
Sbjct: 115 IRCFGEARPGKSGLELYHPEYQFMDELNDTPTEQTLTPIYPSTEGLAQIRWRQLMSQVVA 174

Query: 181 RLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW----TSPARERLAYDEL 233
            +     + + +  +LL  K+ PS+A+A   +H P    D +       PA+ RL  +EL
Sbjct: 175 LIKQGVGVEDLLPAELLTSKNMPSLAQALLYLHQPPVGSDLDQMELYAHPAQHRLIIEEL 234

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA  +++  MR++ ++     I        K+L+ +PF+PT +Q+   ++I+ D ++   
Sbjct: 235 LAHNLSMQKMREEMQRHAAPAIPASQDYLAKLLKQLPFTPTNAQQRVNQEIVADFAKGFP 294

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           MLR++QGDVGSGKTLVA +A    +E G Q  IMAP  ILA+QH +  + + +   I + 
Sbjct: 295 MLRLVQGDVGSGKTLVAAMAALHVLEQGYQVAIMAPTEILAEQHLKNFQGWMEPLGISMA 354

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    R   L  I  G A +I+GTHALFQ+ +++  L L I+DEQHRFGV QRL 
Sbjct: 355 WLAGKVKGKAREATLNAIKQGDAQLIVGTHALFQNDVEFKNLCLAIIDEQHRFGVHQRLA 414

Query: 414 LTQKAT--APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           L +K     PH L+MTATPIPRTL +++  D+D S I E P GR P+ TV+I  +R D++
Sbjct: 415 LREKGKSINPHQLIMTATPIPRTLAMSAYADLDTSIIDELPPGRSPVNTVVIDQDRRDQI 474

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
           +ER++    EG++AYW+C  IEE +E   ++      SL +      I ++HGR+   +K
Sbjct: 475 VERIRAACIEGRQAYWVCTLIEESEEMEAQAAEVTAQSLQDALPELKIGMVHGRLKAQEK 534

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             +M +FK G   LL+ATTVIEVG+DV +AS+++IEN E  GLAQLHQLRGRVGRG   S
Sbjct: 535 ADIMAAFKAGDLHLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGTAQS 594

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+LLY  PLS+    RL  +++T DGF IAE DL+ R  GE+LG +Q+G+ +  IA  +
Sbjct: 595 HCVLLYQTPLSQQGKQRLHAMRDTSDGFKIAEIDLQIRGPGEVLGTRQTGLMQMRIADLQ 654

Query: 651 LHDSLLEI 658
               LL+ 
Sbjct: 655 RDGYLLDD 662


>gi|153833907|ref|ZP_01986574.1| ATP-dependent DNA helicase RecG [Vibrio harveyi HY01]
 gi|148869745|gb|EDL68722.1| ATP-dependent DNA helicase RecG [Vibrio harveyi HY01]
          Length = 693

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 264/707 (37%), Positives = 402/707 (56%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG K +  L+K+            DLLF+ P  + DR     
Sbjct: 1   MSAQMLSAI--PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++       + G +    +    KR+   + ++DG G ITL FF   T  +KN F  G
Sbjct: 53  IAKLHAGLWAAVQGKVMAVDT-TFGKRKMLTVKISDGNGTITLRFFNF-TAAMKNNFSNG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + +   G+IK+    + +VHP Y F+ S+        +  VY    GL     + +  +A
Sbjct: 111 KLVHAYGEIKRGGMGLEIVHPDYKFYVSEQKPDVEQSLTPVYPTTDGLRQITLRNLTEQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDE 232
           LS L    + E +   L   +   S  +A + IH P    +     E   PA+ RL  +E
Sbjct: 171 LSLLDKAAVQELLPSGLYNHQITMS--QALHTIHRPPPTINLDEFDEGKHPAQIRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R + ++++ +P+     + +++L  +PFSPT +Q   +K+I  D+ + +
Sbjct: 229 LLAQNLSMLAVRSKGQQDVALPLASCDSLKKQLLAQLPFSPTNAQARVVKEIEADLEKTH 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFKKMGIQV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    +   L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKLKGKAKEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQ----KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           +L +    +   PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + 
Sbjct: 409 ELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           D++IER++   L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM 
Sbjct: 469 DDIIERVRNACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM  FK+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQDFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLYH PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F I
Sbjct: 589 SVASHCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKI 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A       L+   ++ A++I    P  T+      R L     Y++A
Sbjct: 649 ADLVRDQRLIPEVQRIARYIHDNYP--TNATAIIDRWLGERDIYSKA 693


>gi|90581395|ref|ZP_01237190.1| putative ATP-dependent DNA helicase RecG [Vibrio angustum S14]
 gi|90437372|gb|EAS62568.1| putative ATP-dependent DNA helicase RecG [Vibrio angustum S14]
          Length = 693

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 266/707 (37%), Positives = 398/707 (56%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    LN +   L+   GVG K +  L KI            DLLF+ P  + DR     
Sbjct: 1   MSGQLLNTI--SLAELSGVGAKMAEKLEKI------GLHNVQDLLFHLPLRYEDRTRIWP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+     + +T+ G +  H+S    KR+   + + DGTG +TL FF     M KN F EG
Sbjct: 53  INRAMPGQHLTVQGEV-HHTSITFGKRKMLAVKIGDGTGSVTLRFFNFNAAM-KNSFAEG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++   G+IK  K  + ++HP Y   +          +  VY    GL     + +  +A
Sbjct: 111 KQVKAYGEIKGSKFGLEIIHPDYRIFSEPTELSVEETLTPVYPTTDGLRQLTLRNLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E + + L  ++   ++A+A   +H P      +       PA+ RL  +E
Sbjct: 171 LNLLDKAAVTELLPEGLYDRQ--MTLAQALRAMHRPTPDISLDQLEAGKHPAQHRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R + ++    P+  +  + Q++L ++PFSPT +Q+  + DI  D+ +  
Sbjct: 229 LLAQNLSMLALRSKGQQHSAWPLAAKDSLKQQLLDSLPFSPTGAQQRVVADIEADLIKPQ 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIEHGFQVALMAPTELLAEQHAINFANWLNPMGIQV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R   L RIA G+  +++GTHALFQD +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWMAGKLKGKARETELARIASGEVKMVVGTHALFQDHVKFENLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQ----KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           +L +        PH L+MTATPIPRTL +T+  D+D S I E P GR PI+TV +P  R 
Sbjct: 409 ELREKGANDGRYPHQLVMTATPIPRTLAMTAYADMDTSVIDELPPGRTPIQTVALPDARR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+IER++   ++EG++AYW+C  I+E +    ++  +  + L        I ++HGRM 
Sbjct: 469 PEIIERIRSACVNEGRQAYWVCTLIDESEVLEAQAASDTADELTGLLPDLKIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS+++IEN E  GLAQLHQLRGRVGRG
Sbjct: 529 AAEKQAVMASFKAGELDLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
           +  S C+LLYH PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+ +F +
Sbjct: 589 KVASHCVLLYHAPLSKTAQKRLGVLRESSDGFVIAQRDLEIRGPGELLGTKQTGIAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A       ++   +K A++I    PD  + +    R L     Y+ A
Sbjct: 649 ADLIRDQYMIPQVQKLARYIHDSYPD--NAKAIIDRWLGQRENYSNA 693


>gi|238794542|ref|ZP_04638150.1| ATP-dependent DNA helicase recG [Yersinia intermedia ATCC 29909]
 gi|238726122|gb|EEQ17668.1| ATP-dependent DNA helicase recG [Yersinia intermedia ATCC 29909]
          Length = 693

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 263/707 (37%), Positives = 394/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLST  GVG   +  L+K+            DLL + P  + DR    +
Sbjct: 1   MKGRLLDAV--PLSTLSGVGASQAGKLAKM------GLETIQDLLLHLPLRYEDRTRLYR 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++     VT+ G + + S     +RR     ++DG+G +TL FF     M KN    G
Sbjct: 53  IGDLMPGLSVTVEGEVLR-SDITFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + +   G+ K+      ++HP Y  H           +  VY    G+     +K+I +A
Sbjct: 111 KHVIAYGEAKRGNTGPEIIHPEYRVHGENIGVELQASLTPVYPTTEGIRQATLRKLIDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L+ L   V+ E +  +L   +S  S+ EA + +H P       D E    PA+ RL  +E
Sbjct: 171 LAMLDTCVIAELLPIEL--SRSLISLPEAIHTLHRPPADIQLADLEQGKHPAQRRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +    +P+  E ++ Q+ L  +PF+PT +Q+  + +I QDM+   
Sbjct: 229 LLAHNLSMLAVRAGAQSYRALPLLAEQQLKQRFLAALPFTPTHAQQRVVAEIEQDMAHNF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V
Sbjct: 289 PMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHATTFRQWLEPLGLQV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E +A GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARIAQQEAVASGQVAMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            +VI+R+K   L EG++AYW+C  IEE +    ++       L        + ++HGRM 
Sbjct: 469 SDVIQRVKNACLEEGRQAYWVCTLIEESEVLEAQAAEVTCEELKIALPEIKVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 529 GPEKQAVMLAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+H+  Q P+    R    R L    +Y  A
Sbjct: 649 ADLLRDQAMIPEVQRVARHLHQQYPE--HARALIERWLPERTRYTNA 693


>gi|261250549|ref|ZP_05943124.1| ATP-dependent DNA helicase RecG [Vibrio orientalis CIP 102891]
 gi|260939118|gb|EEX95105.1| ATP-dependent DNA helicase RecG [Vibrio orientalis CIP 102891]
          Length = 692

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/675 (38%), Positives = 392/675 (58%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 9   PLTSLTGVGAKVAEKLAKV------GLVTAQDLLFHLPLRYEDRTRVYPIAKLHAGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF     M KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMSVDTL-FGKRKMLAVKISDGNGTITLRFFNFTAGM-KNNFTEGKTVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F   N        +  VY    GL     + +  +AL  L    + E
Sbjct: 121 GGYGLEIVHPDYKFYASNQPADIEQTLTPVYPTTDGLRQITLRNLTDQALELLDKTAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            +   L  +++  ++A+A + IH P    D E       PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPNGLYDQQT--TLAQALHTIHRPPPNIDLEQFDEGKHPAQIRLIMEELLAQNLSMLSV 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + +++  +P+  +  + Q++L  +PFSPT +Q   +++I QD+ + + M+R++QGDVG
Sbjct: 239 RSKGQQDTALPLTPKDTLKQQLLEQLPFSPTNAQARVVQEIEQDLEKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 299 SGKTLVAALAALRALEHGYQVALMAPTELLAEQHAINFAHWLEPMGIKVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           +   L +IA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 KETELAKIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGEKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + ++++ER++   
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERVRNAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQDF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 539 KDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+GM  F IA       L+ 
Sbjct: 599 SPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGMADFKIADLVRDQRLIP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI    PD
Sbjct: 659 EVQRIARHIHDNYPD 673


>gi|153947523|ref|YP_001399038.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis IP
           31758]
 gi|152959018|gb|ABS46479.1| ATP-dependent DNA helicase RecG [Yersinia pseudotuberculosis IP
           31758]
          Length = 693

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 264/707 (37%), Positives = 396/707 (56%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLST  GVG   +  L+KI            DLL + P  + DR    +
Sbjct: 1   MKGRLLDAV--PLSTLSGVGASQAGKLAKI------GLETIQDLLLHLPLRYEDRTRLYR 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++     VT+ G + + S     +RR     ++DG+G +TL FF     M KN    G
Sbjct: 53  IGDLLPGLSVTVEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + +   G+ K+  N   ++HP Y  H           +  VY    G+     +K+I +A
Sbjct: 111 KHVIAYGEAKRGNNGPEIIHPEYRVHGENIGVELQESLTPVYPTTEGIRQATLRKLIDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L+ L   V+ E +  +L   +S  S+ EA + +H P       D E    PA+ RL  +E
Sbjct: 171 LAMLDTCVIAELLPIEL--SRSLISLPEAIHTLHRPPADIQLADLEQGKHPAQRRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +    +P+  E ++ Q+ L  +PF+PT++Q+  + +I +DM+Q  
Sbjct: 229 LLAHNLSMLAVRAGAQSYRALPLMAEEQLKQRFLAALPFTPTQAQQRVVAEIERDMTQSF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +     V
Sbjct: 289 PMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHATTFRQWLEPLGFSV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E +A GQ  ++IGTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAVASGQVSMVIGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            +VI+R+K   L EG++AYW+C  IEE +    ++       L        + ++HGRM 
Sbjct: 469 SDVIQRVKNACLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+++M +FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 529 GPEKQAIMLAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+H+  Q P+    +    R L    +Y  A
Sbjct: 649 ADLLRDQAMIPEVQRVARHLHQQYPE--HAKALIERWLPERVRYTNA 693


>gi|146291557|ref|YP_001181981.1| ATP-dependent DNA helicase RecG [Shewanella putrefaciens CN-32]
 gi|145563247|gb|ABP74182.1| ATP-dependent DNA helicase RecG [Shewanella putrefaciens CN-32]
          Length = 696

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 254/696 (36%), Positives = 391/696 (56%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +S     T
Sbjct: 13  PITDLKGVAKKVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALSPGSYGT 66

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG ++L FF       +N    G  I   G++++
Sbjct: 67  IEAEIQSTQIIQ-GRKRMLVCNVRDDTGSLSLRFFNFSVAQ-RNAMQNGLMIRAYGEVRR 124

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             ++  +VHP Y + +  +DV+    +  +Y    GL    + K+  +AL  L    L E
Sbjct: 125 GSHQAEIVHPEYKVVYPDEDVHLSDTLTPIYPTTEGLKQASWLKLTEQALVLLKEGGLTE 184

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLLM 243
            +   L  + +  S+ +A   +H P       D E    PA++RL  +ELLA  +++L +
Sbjct: 185 LLPPQL--QPNNISLKQALQTLHRPPAGISQFDLELGQHPAQQRLVQEELLAHNLSMLRL 242

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++   +  + +   G++    L  +PF PT +Q+  + +I +D+ + + M+R++QGDVG
Sbjct: 243 RQRSNLDAAVTMQATGQLLNPFLAALPFKPTGAQQRVVANIGKDLEKPHPMMRLVQGDVG 302

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +    
Sbjct: 303 SGKTLVAAMAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGKLKGKA 362

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +K      
Sbjct: 363 RTQSLADIESGAAQMVIGTHAIFQQHVVFNKLALIIIDEQHRFGVHQRLGLREKGMSQGF 422

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  +R +EV+ER++  V
Sbjct: 423 HPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIADSRRNEVLERVRNAV 482

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++ ++AYW+C  IEE +    ++  +    L       +I ++HGR+   +K+ +M  F
Sbjct: 483 ITDQRQAYWVCTLIEESEVLECQAAEDTAEELRLALPDLNIGLVHGRLKSAEKQQIMADF 542

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 543 KAGMIHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIASHCVLLYK 602

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RLSVL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA      +L+ 
Sbjct: 603 APLSHTATQRLSVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQALIP 662

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H++ Q P+   V    +R L +   Y +A
Sbjct: 663 HIQKLASHVMAQAPE--KVDAIILRWLGHRQHYVQA 696


>gi|170719350|ref|YP_001747038.1| ATP-dependent DNA helicase RecG [Pseudomonas putida W619]
 gi|169757353|gb|ACA70669.1| ATP-dependent DNA helicase RecG [Pseudomonas putida W619]
          Length = 692

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 251/695 (36%), Positives = 389/695 (55%), Gaps = 25/695 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+K+            D+LF+ P  + DR     I  +   +   
Sbjct: 8   SVTALKGVGEAMAQKLAKV------GLENLQDVLFHLPLRYQDRTRVVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DG+G ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVTMGKRRSLVVRLGDGSGVLSLRFYHFSNAQ-KEGLKRGTHLRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPV--LP 186
             + + + HP Y   N  +   P+   +  +Y    GL+    + +  ++L  L    LP
Sbjct: 120 GASGLEIYHPEYRALNGDEPPPPVEQTLTPIYPSTEGLTQQRLRLLCQQSLDMLGPRSLP 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           +W+  +L +      + +A   +HNP    D     E    A+ RLA++ELL  Q++   
Sbjct: 180 DWLPDELARDYHLAPLDDAIRYLHNPPADADLDELAEGQHWAQHRLAFEELLTHQLSQQR 239

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  +      +    ++  + L N+ F PT +Q+    +I  D+SQ   M+R++QGDV
Sbjct: 240 LRESLRSLRAPVLPKAKRLQLQYLANLGFKPTGAQQRVADEIAYDLSQAEPMMRLVQGDV 299

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+VA +A   A+EAG Q  +MAP  ILA+QHY   K++ +   + V  + G +   
Sbjct: 300 GAGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGLEVAWLAGKLKGK 359

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419
            R  ALE+IA+G   +++GTHALFQ+ +Q+  L L I+DEQHRFGVQQRL L +K     
Sbjct: 360 ARASALEQIANGAP-MVVGTHALFQEEVQFKHLALAIIDEQHRFGVQQRLALRKKGVAGE 418

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++  
Sbjct: 419 LCPHQLIMTATPIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAA 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K +VM  F
Sbjct: 479 CAEGRQAYWVCTLIEESEELTCQAAESTYEELGSALGELRVGLIHGRMKPAEKAAVMAEF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYH
Sbjct: 539 KQGDLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL 
Sbjct: 599 PPLSQIGRERLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLP 658

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
             R  A+ ++ + P+  S      R L +  QY +
Sbjct: 659 AVRDAAQALIARWPEHVSPL--LDRWLRHGQQYGQ 691


>gi|330447151|ref|ZP_08310801.1| ATP-dependent DNA helicase RecG [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491342|dbj|GAA05298.1| ATP-dependent DNA helicase RecG [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 693

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 267/707 (37%), Positives = 398/707 (56%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    LN +   L    GVG K +  L KI            DLLF+ P  + DR     
Sbjct: 1   MSGQLLNTIA--LGELSGVGAKMAEKLEKI------GLNNVQDLLFHLPLRYEDRTRIWP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+     + +T+ G +  H+S    KR+   + + DGTG +TL FF     M KN F EG
Sbjct: 53  INRAMPGQHLTVQGEV-HHTSITFGKRKMLAVKIGDGTGSVTLRFFNFNAAM-KNSFAEG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++   G+IK  K  + ++HP Y   +          +  VY    GL     + +  +A
Sbjct: 111 KQVKAYGEIKGSKFGLEIIHPDYRIFSEPTELSVEETLTPVYPTTDGLRQLTLRNLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E + + L  ++   ++A+A  ++H P      +       PA+ RL  +E
Sbjct: 171 LNLLDKAAVTELLPEGLYDRQ--MTLAQALRLMHRPTPDISLDQLDAGKHPAQHRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R + ++    P+  +  + Q++L ++PFSPT +Q+  + DI  D+++  
Sbjct: 229 LLAQNLSMLALRSKGQQHNAWPLAAKDTLKQQLLDSLPFSPTGAQQRVVADIETDLAKAQ 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIEHGYQVALMAPTELLAEQHAINFANWLNPMGIQV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R   L RI  G+  +++GTHALFQD +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKLKGKARETELTRITSGEVKMVVGTHALFQDHVKFDNLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQ----KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           +L +        PH L+MTATPIPRTL +T+  D+D S I E P GR PI+TV +P  R 
Sbjct: 409 ELREKGANDGRYPHQLVMTATPIPRTLAMTAYADMDTSIIDELPPGRTPIQTVALPDARR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+IER++   L+EG++AYW+C  I+E +    ++  +  + L        I ++HGRM 
Sbjct: 469 AEIIERIRSACLNEGRQAYWVCTLIDESEVLEAQAASDTADELTGLLPDLKIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS+++IEN E  GLAQLHQLRGRVGRG
Sbjct: 529 AQEKQAVMASFKAGELDLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
           +  S C+LLYH PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+ +F +
Sbjct: 589 KVASHCVLLYHAPLSKTAQKRLGVLRESSDGFVIAQRDLEIRGPGELLGTKQTGIAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A       L+   +K A++I    PD  + +    R L     Y+ A
Sbjct: 649 ADLIRDQYLIPQVQKLARYIHDNYPD--NAKAIIDRWLGQRENYSNA 693


>gi|322612910|gb|EFY09862.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618975|gb|EFY15862.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625248|gb|EFY22075.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322630084|gb|EFY26857.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634276|gb|EFY31011.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635823|gb|EFY32532.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642974|gb|EFY39552.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645033|gb|EFY41564.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649867|gb|EFY46290.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653074|gb|EFY49409.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661107|gb|EFY57335.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662404|gb|EFY58617.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667282|gb|EFY63448.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674341|gb|EFY70434.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678451|gb|EFY74512.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680957|gb|EFY76991.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687107|gb|EFY83080.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323193171|gb|EFZ78389.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198252|gb|EFZ83358.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323200870|gb|EFZ85940.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206624|gb|EFZ91582.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210463|gb|EFZ95349.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216248|gb|EGA00976.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220471|gb|EGA04925.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225335|gb|EGA09569.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228449|gb|EGA12580.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234270|gb|EGA18358.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237255|gb|EGA21322.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244774|gb|EGA28778.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245851|gb|EGA29841.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250966|gb|EGA34842.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257286|gb|EGA40985.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262210|gb|EGA45771.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264579|gb|EGA48083.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268868|gb|EGA52326.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 693

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    + Q++L ++PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHAQPLSTNDTLKQQLLASLPFKPTSAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+I+R++   + EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 HEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRIARHIHERYP--QQAQALIERWMPETERYSNA 693


>gi|204928489|ref|ZP_03219688.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204321922|gb|EDZ07120.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 693

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    + Q++L ++PF PT +Q   + +I  DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHAQPLSTNDTLKQQLLASLPFKPTSAQARVVAEIEHDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA+GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIANGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+I+R++    +EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 HEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A       ++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQGMIPEVQRIARHIHERYP--QQAQALIERWMPETERYSNA 693


>gi|328471707|gb|EGF42584.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus 10329]
          Length = 693

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/674 (38%), Positives = 392/674 (58%), Gaps = 24/674 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F +G+ +   G+IK+
Sbjct: 64  VQGKVMTVDTI-FGKRKMLTVKISDGNGTITLRFFNF-TAAMKNNFSQGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F+ S+        +  VY    GL     + +  +AL+ L    + E
Sbjct: 122 GGMGLEIVHPDYKFYASEQKPDVEQSLTPVYPTTDGLRQITLRNLTEQALALLDKAAVQE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L   +   S  +A + IH P    +     E   PA+ RL  +ELLA  +++L +
Sbjct: 182 LLPSGLYNHQITMS--QALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + +++I +P+    K+ +++L  +PFSPT +Q   +K+I  D+ + + M+R++QGDVG
Sbjct: 240 RSKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIESDLEKPHPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAAVRAIEHGYQVTLMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           +   L RIA G+A +I+GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 360 KETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQGA 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++   
Sbjct: 420 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 480 LNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 540 KDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 600 SPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLIP 659

Query: 658 IARKDAKHILTQDP 671
             ++ A+HI    P
Sbjct: 660 EVQRIARHIHDNYP 673


>gi|200386980|ref|ZP_03213592.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199604078|gb|EDZ02623.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 693

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 258/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L       S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTCAIAELLPPEL--AHGMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+I+R++   + EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 HEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRIARHIHERYP--QQAQALIERWMPETERYSNA 693


>gi|91224993|ref|ZP_01260252.1| ATP-dependent DNA helicase RecG [Vibrio alginolyticus 12G01]
 gi|91190239|gb|EAS76509.1| ATP-dependent DNA helicase RecG [Vibrio alginolyticus 12G01]
          Length = 693

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 261/696 (37%), Positives = 398/696 (57%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F +G+ +   G+IK+
Sbjct: 64  VQGKVMAVDTI-FGKRKMLTVKISDGNGTITLRFFNF-TAAMKNNFTQGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F+ S+        +  VY    GL     + +  +AL+ L    + E
Sbjct: 122 GGMGLEIVHPDYKFYVSEQKPDVEQSLTPVYPTTDGLRQITLRNLTEQALALLDKTAVQE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L   +   S  +A + IH P    +     E   PA+ RL  +ELLA  +++L +
Sbjct: 182 LLPAGLYDHQITMS--QALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + +K+  +P+    K+  ++L  +PFSPT +Q   +++I  D+ + + M+R++QGDVG
Sbjct: 240 RSKGQKDSALPLGPCNKLKTQLLVQLPFSPTNAQTRVVQEIEADLEKPHPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAAVRAIEHGHQVALMAPTELLAEQHAINFANWFETMGIQVGWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           +   L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 360 KEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQGA 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + ++++ER++   
Sbjct: 420 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRNDIVERVRNAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 480 LNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQDF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 540 KDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 600 SPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             ++ A+HI    P  T+      R L     Y++A
Sbjct: 660 EVQRIARHIHDNYP--TNATAIIDRWLGERDIYSKA 693


>gi|92115360|ref|YP_575288.1| ATP-dependent DNA helicase RecG [Chromohalobacter salexigens DSM
           3043]
 gi|91798450|gb|ABE60589.1| ATP-dependent DNA helicase RecG [Chromohalobacter salexigens DSM
           3043]
          Length = 697

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 253/683 (37%), Positives = 377/683 (55%), Gaps = 22/683 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L AP+    GVG+  +  L+++            D+LF+ P  + DR     I  +   
Sbjct: 7   ALDAPVGELSGVGEALTAKLARL------GIVSIADMLFHLPLRYQDRTRITPIGTLRAG 60

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
               + G I+     +  +RR   + L DG+G ++L FF+      +  F  G ++   G
Sbjct: 61  TEAVVEGEIAAADIVK-GRRRSLLVRLKDGSGILSLRFFHFSPAQ-QQQFVRGMRVRAFG 118

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPV-- 184
           + +     + + HP Y     +D      +  +Y    GL+    + ++ +AL RL    
Sbjct: 119 EARAGATGLEIYHPEYRLLRQEDAPVEEHLTPIYPTTEGLAQPRLRGLVQQALKRLDDDD 178

Query: 185 --LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQI 238
             LP+WI   L Q+   P + E+   +H P          E   PA+ RLA +ELLA Q+
Sbjct: 179 AGLPDWIPDSLRQRFRLPGLVESLRYLHEPPPDAPVAQLAEGKHPAQRRLALEELLAHQL 238

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +L  +R + + +    +     +  + L  +PFS T +Q   + +I  D+ +   MLR++
Sbjct: 239 SLRQVRLRIQTDSAPSLGGGRGLQARFLTQLPFSLTGAQRRVLDEIGHDLERAVPMLRLV 298

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA +A  AA+  G QA IMAP  ILA+QHY     +     I V  ++G 
Sbjct: 299 QGDVGSGKTVVAAMAALAAIAGGCQAAIMAPTEILAEQHYRNFSDWFAPLGIEVGWLSGK 358

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    R      IA G+  + +GTHALFQD +++++L L I+DEQHRFGV QRL L QK 
Sbjct: 359 LKGKARLDTKAAIADGRVQVAVGTHALFQDDVRFHRLGLAIIDEQHRFGVHQRLALRQKG 418

Query: 419 T----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                 PH L+MTATPIPRTL +++  D+D+S I E P GR P++TV +P  R  EV+ER
Sbjct: 419 EAGGLTPHQLIMTATPIPRTLAMSAYADLDLSMIDELPPGRTPVQTVAVPDERRPEVVER 478

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++   +EG +AYW+C  IEE +    ++       L E     ++ ++HGRM   +K  V
Sbjct: 479 IQRACAEGHQAYWVCTLIEESEALTCQAAEATHAHLGEALPDLAVGLVHGRMKAGEKAEV 538

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +F +G   LL+ATTVIEVG+DV +AS++IIEN E  GL+QLHQLRGRVGRG   S C+
Sbjct: 539 MAAFTSGELDLLVATTVIEVGVDVPNASLMIIENPERLGLSQLHQLRGRVGRGATESFCV 598

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLYHPPLS +S  RL V+++T DGF IAE+DL+ R  GE+LG +Q+G+ +  IA  E   
Sbjct: 599 LLYHPPLSHHSRERLGVMRDTTDGFRIAEKDLELRGPGEVLGTRQTGLAQMKIADLERDR 658

Query: 654 SLLEIARKDAKHILTQDPDLTSV 676
            LL+     A+ +L + P+  + 
Sbjct: 659 DLLDTISPLARALLDEAPEAATP 681


>gi|254228569|ref|ZP_04921994.1| ATP-dependent DNA helicase RecG [Vibrio sp. Ex25]
 gi|151938951|gb|EDN57784.1| ATP-dependent DNA helicase RecG [Vibrio sp. Ex25]
          Length = 693

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 262/696 (37%), Positives = 398/696 (57%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F +G+ +   G+IK+
Sbjct: 64  VQGKVMAVDTI-FGKRKMLTVKISDGNGTITLRFFNF-TAAMKNNFTQGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F+ S+        +  VY    GL     + +  +AL+ L    + E
Sbjct: 122 GGVGLEIVHPDYKFYVSEQKPDVEQSLTPVYPTTDGLRQITLRNLTEQALALLDKTAVQE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L   +   S  +A + IH P    +     E   PA+ RL  +ELLA  +++L +
Sbjct: 182 LLPAGLYNHQITMS--QALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + +K+  +P+    K+  ++L  +PFSPT +Q   +++I  D+ + + M+R++QGDVG
Sbjct: 240 RSKGQKDSALPLGPCNKLKMQLLAQLPFSPTNAQTRVVQEIETDLEKPHPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFETMDIQVGWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           +   L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 360 KEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQGA 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++   
Sbjct: 420 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 480 LNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQDF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 540 KDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 600 SPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             ++ A+HI    P  T+      R L     Y++A
Sbjct: 660 EVQRIARHIHDNYP--TNATAIIDRWLGERDIYSKA 693


>gi|168235359|ref|ZP_02660417.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194735749|ref|YP_002116687.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194711251|gb|ACF90472.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291521|gb|EDY30873.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 693

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 258/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +   +L ++PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHAQPLSTNNILKDNLLASLPFKPTSAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+I+R++   + EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 HEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRIARHIHERYP--QQAQALIERWMPETERYSNA 693


>gi|262392640|ref|YP_003284494.1| ATP-dependent DNA helicase RecG [Vibrio sp. Ex25]
 gi|262336234|gb|ACY50029.1| ATP-dependent DNA helicase RecG [Vibrio sp. Ex25]
          Length = 689

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 262/696 (37%), Positives = 398/696 (57%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 6   PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 59

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F +G+ +   G+IK+
Sbjct: 60  VQGKVMAVDTI-FGKRKMLTVKISDGNGTITLRFFNF-TAAMKNNFTQGKLVHAYGEIKR 117

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F+ S+        +  VY    GL     + +  +AL+ L    + E
Sbjct: 118 GGVGLEIVHPDYKFYVSEQKPDVEQSLTPVYPTTDGLRQITLRNLTEQALALLDKTAVQE 177

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L   +   S  +A + IH P    +     E   PA+ RL  +ELLA  +++L +
Sbjct: 178 LLPAGLYNHQITMS--QALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAV 235

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + +K+  +P+    K+  ++L  +PFSPT +Q   +++I  D+ + + M+R++QGDVG
Sbjct: 236 RSKGQKDSALPLGPCNKLKMQLLAQLPFSPTNAQTRVVQEIETDLEKPHPMMRLVQGDVG 295

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 296 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFETMDIQVGWLAGKLKGKA 355

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           +   L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 356 KEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQGA 415

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++   
Sbjct: 416 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNAC 475

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 476 LNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQDF 535

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 536 KDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 595

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 596 SPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLIP 655

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             ++ A+HI    P  T+      R L     Y++A
Sbjct: 656 EVQRIARHIHDNYP--TNATAIIDRWLGERDIYSKA 689


>gi|297544771|ref|YP_003677073.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842546|gb|ADH61062.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 681

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 254/691 (36%), Positives = 389/691 (56%), Gaps = 18/691 (2%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL   +   +GVG K +  L K+            DLLFY P  + +R    KI +++  
Sbjct: 2   PLNLDIQYVKGVGPKRAKLLKKL------GIQTVEDLLFYFPKDYENRSSILKIEDLTVG 55

Query: 68  RIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              T  GYI       +  +    K+ + DGTG + L+++ +    +KN    G +  + 
Sbjct: 56  EKQTFKGYIVGSPREIKTSRVIITKVPVKDGTGAVELVWYNQ--PYIKNNLKIGEEYIIN 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVL 185
           GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL   +  +
Sbjct: 114 GKLRFKYGQLIVENPVIEKSEDFKLNTGRIVPIYGLTEGLTQNAIRKIMFNALKEYVQEV 173

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+AL LM+ 
Sbjct: 174 EEFFDEEFLSEKRLMDIKSALININFPQNEAYLEQA---KYRFKYQELFLLQMALFLMKG 230

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             K++ GI    E    +  +  +PF  T++Q   +K+I+ DM+    M R++QGDVGSG
Sbjct: 231 SAKEKKGIKF--ERVDLKPFIMGLPFKLTQAQVKVLKEIIADMNSHKVMNRLVQGDVGSG 288

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  ++++
Sbjct: 289 KTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYSTLKELFKNTDIKIGLLSGSLSPSNKK 348

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE+I  G   II+GTHAL +D + +  L L I DEQHRFGV+QR  LTQK   P VL+
Sbjct: 349 EVLEKIKKGDYDIIVGTHALIEDDVVFNNLGLCITDEQHRFGVRQRALLTQKGKNPDVLV 408

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +G++ 
Sbjct: 409 MTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQV 468

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE  + +  S    +  +++     + + ++HG+M+D +KE VM+ F NG   
Sbjct: 469 YVVCPLIEESDKISAMSAEIVYREIYKDAFKEAKVGLLHGKMADSEKEKVMEEFVNGKID 528

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGR E  S CIL+ +   S  
Sbjct: 529 ILVSTTVIEVGVNVPNATVMIIENAERFGLAQLHQLRGRVGRSEFQSYCILISYSN-SDV 587

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL VL  T DGF IAE+DL+ R  GE LG++Q G+P+F IA       +L+I +KD 
Sbjct: 588 AKKRLGVLAQTSDGFKIAEKDLEIRGPGEFLGLRQHGLPEFKIANIVEDIDILKIVQKDV 647

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           + +L +DP L +       +L   YQ  E  
Sbjct: 648 EELLKKDPKLENYPKIKNILLNQFYQKLEGI 678


>gi|260902543|ref|ZP_05910938.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus AQ4037]
 gi|308109661|gb|EFO47201.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus AQ4037]
          Length = 693

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/674 (38%), Positives = 391/674 (58%), Gaps = 24/674 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F +G+ +   G+IK+
Sbjct: 64  VQGKVMTVDTI-FGKRKMLTVKISDGNGTITLRFFNF-TAAMKNNFSQGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F+ S+        +  VY    GL     + +  +AL  L    + E
Sbjct: 122 GGMGLEIVHPDYKFYASEQKPDVEQSLTPVYPTTDGLRQITLRNLTEQALVLLDKAAVQE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L   +   S  +A + IH P    +     E   PA+ RL  +ELLA  +++L +
Sbjct: 182 LLPSGLYNHQITMS--QALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + +++I +P+    K+ +++L  +PFSPT +Q   +K+I  D+ + + M+R++QGDVG
Sbjct: 240 RSKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIESDLEKPHPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           +   L RIA G+A +I+GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 360 KETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQGA 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++   
Sbjct: 420 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 480 LNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 540 KDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 600 APLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLIP 659

Query: 658 IARKDAKHILTQDP 671
             ++ A+HI    P
Sbjct: 660 EVQRIARHIHDNYP 673


>gi|254976149|ref|ZP_05272621.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-66c26]
 gi|255093539|ref|ZP_05323017.1| ATP-dependent DNA helicase RecG [Clostridium difficile CIP 107932]
 gi|255315282|ref|ZP_05356865.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-76w55]
 gi|255517950|ref|ZP_05385626.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-97b34]
 gi|255651066|ref|ZP_05397968.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-37x79]
 gi|306520922|ref|ZP_07407269.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-32g58]
          Length = 685

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 248/695 (35%), Positives = 395/695 (56%), Gaps = 19/695 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L+  +   +G+G K +  L+K+            DLL+Y P  F DR+   KI+++ +  
Sbjct: 3   LYKDVQYVKGIGPKKADKLNKL------GIFTLKDLLYYFPRQFEDRNNLKKIAQLEDGE 56

Query: 69  IVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            VTI   IS  ++F  ++     KI + D TG   L+FF +    +KN F  G  I V G
Sbjct: 57  KVTIKAVISSINTFSPKEGMTLTKIDVKDETGSAKLVFFNKS--YIKNTFRPGDSILVFG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-P 186
           K+KK  N + +      +  +   N      VY L  G++      II   L    ++  
Sbjct: 115 KVKKKFNNLELTSCELEYLTNSPKNTCRFMPVYQLTYGVTNKEIMSIIRTVLEDKELIIQ 174

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E++ + +++K    SI  A   IH+P   +       A  R+ ++ELL  Q+ L + +  
Sbjct: 175 EYMPQRIIEKYRLCSIDFAVRNIHSPSSKESL---KIALYRIVFEELLILQLGLFVFKSG 231

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
             KE GI      K  +KI+  +PF  TK+Q  A+ +I+QDM+ +  M R++QGDVGSGK
Sbjct: 232 RNKEDGIKFET-SKDLKKIISALPFKLTKAQNRALDEIIQDMNLEKIMNRLVQGDVGSGK 290

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VAL+A+A  V  G Q  +MAP  ILA QHY  + +  ++  I V ++ G++ +  +  
Sbjct: 291 TVVALLALANCVLNGYQGALMAPTEILAGQHYISLTESLKDFGINVGLLIGSLTKKQKDT 350

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE+I + +  I+IGTHAL +D +++  + LVI DEQHRFGV QR KL+ K   P +L+M
Sbjct: 351 VLEQIRNNEIDILIGTHALIEDKVEFNNIGLVITDEQHRFGVMQRSKLSLKGANPDILVM 410

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKA 485
           TATPIPRTL L   GD+DIS I E P GR+PI+T+ I  ++ D      ++  +  G++ 
Sbjct: 411 TATPIPRTLALILYGDLDISIIDELPPGRQPIETIAIEKSKRDRAYNNLVRREVESGRQV 470

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP +EE +    +S VE    L   +     + ++HG+M   +K+ VM+ FKN    
Sbjct: 471 YIVCPLVEESEAIEAKSAVELVEELRAEYFHDLRLGLLHGKMKSSEKDEVMERFKNKEID 530

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG   S C+L+Y    +  
Sbjct: 531 ILVSTTVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGSHKSYCVLIYDSK-TDV 589

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+++++ T DGF I+E+DL+ R  GE  G +Q G+P+  +A    H  +L++A+++A
Sbjct: 590 CRQRMAIMEETNDGFKISEKDLEIRGPGEFFGTRQHGLPELKVANLFKHIKILKLAQQEA 649

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
           ++IL +D +L      +++  + + ++ +  + I 
Sbjct: 650 RYILGEDNNLQLKENMALKKEI-IDKFKDTLKEIS 683


>gi|197264277|ref|ZP_03164351.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197242532|gb|EDY25152.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 693

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L   V+ E +  +L Q     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTCVIAELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+I+R++   + EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 HEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRIARHIHERYP--QQAQALIERWMPETERYSNA 693


>gi|152972506|ref|YP_001337652.1| ATP-dependent DNA helicase RecG [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238897102|ref|YP_002921848.1| ATP-dependent DNA helicase RecG [Klebsiella pneumoniae NTUH-K2044]
 gi|262045612|ref|ZP_06018631.1| ATP-dependent DNA helicase RecG [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329996956|ref|ZP_08302653.1| ATP-dependent DNA helicase RecG [Klebsiella sp. MS 92-3]
 gi|150957355|gb|ABR79385.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238549430|dbj|BAH65781.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259037038|gb|EEW38290.1| ATP-dependent DNA helicase RecG [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539246|gb|EGF65275.1| ATP-dependent DNA helicase RecG [Klebsiella sp. MS 92-3]
          Length = 693

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 254/685 (37%), Positives = 379/685 (55%), Gaps = 26/685 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PLS+  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLSSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+E+      T+ G +  +S+     RR     ++DGTG +T+ FF     M KN    G
Sbjct: 53  IAELLPGVYATVEGEVL-NSNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDMSTPELQETLTPVYPTTEGIKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA----KDFEWTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P  +    +      PA++RL  +E
Sbjct: 171 LELLETCAISELLPPELAQ--GMMSLPEALRTLHRPPPSLQLSELESGKHPAQQRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   +P+     +  ++L ++PF PT +Q     +I  DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHALPLGANDTLKNQLLASLPFKPTGAQARVTAEIEHDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIVHGKQVALMAPTELLAEQHANNFRNWFEPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA G+  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGEVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 SDIIDRVRNACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGEMHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDP 671
           A      +++   ++ A+HI  + P
Sbjct: 649 ADLLRDQAMIPDVQRIARHIHERYP 673


>gi|168260500|ref|ZP_02682473.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205350535|gb|EDZ37166.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 693

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+I+R++   + EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 HEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRIARHIHERYP--QQAQALIERWMPETERYSNA 693


>gi|168464946|ref|ZP_02698838.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195632480|gb|EDX50964.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 693

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRSWFAPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+I+R++   + EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 HEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 SVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRIARHIHERYP--QQAQALIERWMPETERYSNA 693


>gi|322716726|gb|EFZ08297.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 704

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 12  MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 63

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 64  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 121

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 122 RRVLAYGEAKRGKYGTEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 181

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 182 LELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPMLQLADLETGKHPAQRRLILEE 239

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+   
Sbjct: 240 LLAHNLSMLALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDV 299

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V
Sbjct: 300 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEV 359

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 360 GWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 419

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 420 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 479

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+I+R++   + EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 480 HEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 539

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 540 PAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 599

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
             +S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 600 AVVSHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 659

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 660 ADLLRDQAIIPEVQRIARHIHERYP--QQAQALIERWMPETERYSNA 704


>gi|157963695|ref|YP_001503729.1| ATP-dependent DNA helicase RecG [Shewanella pealeana ATCC 700345]
 gi|157848695|gb|ABV89194.1| ATP-dependent DNA helicase RecG [Shewanella pealeana ATCC 700345]
          Length = 696

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 258/696 (37%), Positives = 393/696 (56%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +      T
Sbjct: 13  PITDLKGVAKKMAERLAKLS------ITTVQDLLFHLPLRYEDRTQVYPIASLYPGSYGT 66

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG +TL FF       +N    G  I   G+I++
Sbjct: 67  IEAIIQSSQIIQ-GRKRMLTCTVRDDTGSLTLRFFNFSVAQ-RNGLEIGMTIRAYGEIRR 124

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             + + ++HP Y +    +D+     +  VY    GL    + K+  +AL+ L    L E
Sbjct: 125 SNHGVEIIHPEYKLISPGEDLQLSDTLTPVYPTTEGLKQASWIKLTEQALAMLDNGGLQE 184

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +  +L Q  +   + +A  I+H P          + T PA++RL  +ELLA  +++L +
Sbjct: 185 LLPTNL-QPNNL-DLKQALQILHRPNNQVSLFELEQGTHPAQQRLIQEELLAHNLSMLRL 242

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++  ++  + +N  G++    L ++PF PT +Q+  + DI QD+++   M+R++QGDVG
Sbjct: 243 RQRSNRDSAVSMNATGQLLNPFLASLPFKPTGAQQRVVADITQDLAKHEPMMRLVQGDVG 302

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E+G Q  +MAP  +LA+QH    K + +   + V  + G +    
Sbjct: 303 SGKTLVAALAALQAIESGYQVAMMAPTELLAEQHAINFKSWFEPLGLKVGWLAGKLKGKA 362

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R ++L  I  G AHI+IGTHA+FQ+ +Q+ KL L+I+DEQHRFGV QRL L +    +  
Sbjct: 363 RAQSLADIESGDAHIVIGTHAIFQEQVQFNKLALIIIDEQHRFGVHQRLGLREKGISQGF 422

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I   R +EV+ER++   
Sbjct: 423 HPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAISEQRREEVLERVRQAA 482

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++ ++AYW+C  IEE +    ++  +    L        + ++HGRM   +K+ +M  F
Sbjct: 483 INDKRQAYWVCTLIEESEALECQAAEDTAEELKRALPELKVGLVHGRMKPAEKQQIMADF 542

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 543 KAGELNLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 602

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  R+ VL+ + DGF+IA++DL+ R  GE+LG KQ+G+    IA      +L+ 
Sbjct: 603 APLSATATKRIGVLRQSNDGFVIAQQDLEIRGPGEVLGTKQTGIADMKIADLMRDQALIP 662

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H++ Q P+  SV     R L    Q+ +A
Sbjct: 663 HIQKLAAHVMQQAPN--SVDAIIERWLGDREQFVQA 696


>gi|16762566|ref|NP_458183.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144055|ref|NP_807397.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213425216|ref|ZP_03357966.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213855784|ref|ZP_03384024.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25290832|pir||AE0969 ATP-dependent DNA helicase (EC 3.6.1.-) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504871|emb|CAD03249.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139691|gb|AAO71257.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 693

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHTQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+I+R++   + EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 HEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRIARHIHERYP--QQAQALIERWMPETERYSNA 693


>gi|123440445|ref|YP_001004439.1| ATP-dependent DNA helicase RecG [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087406|emb|CAL10187.1| ATP-dependent DNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 693

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 262/707 (37%), Positives = 395/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLST  GVG   +  L+K+            DLL + P  + DR    +
Sbjct: 1   MKGRLLDAV--PLSTLSGVGASQAGKLAKM------GLETIQDLLLHLPLRYEDRTRLYR 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++     VT+ G + + S     +RR     ++DG+G +TL FF     M KN    G
Sbjct: 53  IGDLLPGLSVTVEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + +   G+ K+      ++HP Y  H           +  VY    G+     +K+I +A
Sbjct: 111 KHVIAYGEAKRGNTGPEIIHPEYRVHGENIGVELQESLTPVYPTTEGIRQATLRKLIDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L+ L   V+ E +  +L   +S  S+ EA +I+H P       D E    PA+ RL  +E
Sbjct: 171 LAMLDSSVIAELLPIEL--SRSLISLPEAIHILHRPPADIQLADLEQGKHPAQRRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +    +P+  E ++ ++ L  +PF+PT +Q+  + +I QDM+   
Sbjct: 229 LLAHNLSMLAVRAGAQSYRALPLLPEEQLKRRFLAALPFTPTHAQQRVVAEIEQDMTHSY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V
Sbjct: 289 PMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLEPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E +A GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAVASGQVSMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            +VI+R+K   L EG++AYW+C  IEE +    ++       L        + ++HGRM 
Sbjct: 469 SDVIQRVKNACLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 529 GPEKQAVMLAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+H+  Q P+    +    R L    +Y  A
Sbjct: 649 ADLLRDQAMIPEVQRVARHLHQQYPE--HAQALIERWLPERTRYTNA 693


>gi|161616826|ref|YP_001590791.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194445167|ref|YP_002042993.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|161366190|gb|ABX69958.1| hypothetical protein SPAB_04645 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403830|gb|ACF64052.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 693

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRSWFAPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+I+R++   + EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 HEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 SVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAIIPEVQRIARHIHERYP--QQAQALIERWMPETERYSNA 693


>gi|167040378|ref|YP_001663363.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter sp. X514]
 gi|300914462|ref|ZP_07131778.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter sp. X561]
 gi|307724302|ref|YP_003904053.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter sp. X513]
 gi|166854618|gb|ABY93027.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter sp. X514]
 gi|300889397|gb|EFK84543.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter sp. X561]
 gi|307581363|gb|ADN54762.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter sp. X513]
          Length = 681

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 256/691 (37%), Positives = 391/691 (56%), Gaps = 18/691 (2%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL   +   +GVG K +  L K+            DLLFY P  + +R    KI ++   
Sbjct: 2   PLNLDIQYVKGVGPKRAKLLKKL------GINTVEDLLFYFPKDYENRSDILKIEDLKVG 55

Query: 68  RIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              T  GYI+      +  K    K+ + DGTG + L+++ +    +KN F  G +  + 
Sbjct: 56  EKQTFRGYIAGSPREIKTSKVIITKVPVKDGTGVVELVWYNQ--PYIKNNFKIGEEYIIN 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVL 185
           GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL   +  +
Sbjct: 114 GKLQFKYGQLIVENPVLEKSEDFKLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEV 173

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+AL LM++
Sbjct: 174 EEFFDEEFLSEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMALFLMKR 230

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             K++ GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++QGDVGSG
Sbjct: 231 SVKEKKGIKF--EQADLKPFLMGLPFKLTLAQIKVLKEIIADMNSHKVMNRLVQGDVGSG 288

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  ++++
Sbjct: 289 KTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKK 348

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE+I +G   I++GTHAL +D++ +  L L I DEQHRFGV+QR  LTQK   P VL+
Sbjct: 349 EVLEKIKNGDYDIVVGTHALIEDNVIFNNLGLCITDEQHRFGVRQRALLTQKGENPDVLV 408

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRT  L   GD+DIS I + P GRK +KT +I  +  ++  E     + +G++ 
Sbjct: 409 MTATPIPRTFALILYGDLDISIIDQLPPGRKKVKTYVISSSVREKAYEFAMKEVKKGRQV 468

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F NG   
Sbjct: 469 YVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMADSDKEKVMEEFVNGKID 528

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++I+ENAE FGLAQLHQLRGRVGR E  S CIL+ +   S  
Sbjct: 529 ILVSTTVIEVGVNVPNATVMIVENAERFGLAQLHQLRGRVGRSEFQSYCILISYSN-SDI 587

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL VL  T DGF IAE+DL+ R  GE LG++Q G+P+F IA       +LE  +KD 
Sbjct: 588 AKKRLGVLAQTSDGFKIAEKDLEIRGPGEFLGLRQHGLPEFKIANIFEDIDVLERVQKDV 647

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           + +L +DP L +       +L   YQ  E  
Sbjct: 648 EELLEKDPKLENYPKLRSILLNQFYQKLEGI 678


>gi|254281548|ref|ZP_04956516.1| ATP-dependent DNA helicase RecG [gamma proteobacterium NOR51-B]
 gi|219677751|gb|EED34100.1| ATP-dependent DNA helicase RecG [gamma proteobacterium NOR51-B]
          Length = 715

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 254/675 (37%), Positives = 385/675 (57%), Gaps = 22/675 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + ++  RGVG K +  L+ +            DLLFY P  + DR     I+ + +  
Sbjct: 33  LNSSITRLRGVGPKLAEKLADL------GIRAIEDLLFYFPIRYEDRTRVTPIAALRDGV 86

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              +   ++  S     +RR     + DG+G ++L  F+ +   LK  F  G  I + G+
Sbjct: 87  NAVVVAEVTLASIVP-GRRRALVAKVADGSGVMSLRLFHFRNAQLKQ-FSPGAPIMLYGQ 144

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
            ++    + MVHP Y   +        +  VY    GL   L++++  +AL+ L   P  
Sbjct: 145 PRRGSGAVEMVHPEYRIGSETPELESHLTPVYPTIEGLGQALWRRLCGQALTVLDKEP-- 202

Query: 189 IEKDLLQKK--SFPSIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIALLL 242
              DLL           EA   +H+P      E       PA+ RLA +EL+A Q+++  
Sbjct: 203 -PPDLLSPYYSGSFGWVEALRFLHHPPPDARLESIIECDHPAQLRLALEELVAHQLSMRQ 261

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R++ +++   P+   G + +++L ++PF PT +QE    +IL D+S+   MLR++QGDV
Sbjct: 262 LREKEREQPAPPLRGSGALRRQLLASLPFQPTAAQERVSSEILDDLSRPTPMLRLVQGDV 321

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA IA   A++AG Q  +MAP  +LA+QH +  K +     I V  +TG +   
Sbjct: 322 GSGKTLVAAIAALEAIDAGFQVALMAPTELLAEQHLQNFKTWFSPLGIEVGWLTGRVKGK 381

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ---KAT 419
            R+  L  +  G + I++GTHALFQD + + +L LVIVDEQHRFGV QRL LT+    + 
Sbjct: 382 QRQAILAAVTAGDSKILVGTHALFQDDVSFARLGLVIVDEQHRFGVHQRLSLTEKGGNSG 441

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L++TATPIPRTL + +  D+D S I E P GR P++T ++  +R   VIER+ V  
Sbjct: 442 HPHQLVLTATPIPRTLSMVAYADLDCSIIDELPPGRTPVQTTLLDNSRRAAVIERVGVAC 501

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSF 537
            EG++AYW+C  I+E      ++       L         + +IHGR+   +KESVM +F
Sbjct: 502 GEGRQAYWVCTVIDESDTLTVQAAEATAGHLTGALPDTVRVGLIHGRLPGSEKESVMAAF 561

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG + S C+LLY 
Sbjct: 562 KRGDIDLLVATTVIEVGVDVANASLMIIENPERLGLAQLHQLRGRVGRGADKSHCLLLYQ 621

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS+ +  RL+V++++ DGF IAE+DL+ R  GE+LG +Q+G+ +F +A+   H++LL+
Sbjct: 622 TPLSQTARARLNVMRDSNDGFFIAEQDLRLRGPGELLGTRQTGLAQFRVAKLPEHEALLD 681

Query: 658 IARKDAKHILTQDPD 672
             +  +  I  + P+
Sbjct: 682 QVQVISDRIAAESPE 696


>gi|301018981|ref|ZP_07183204.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 69-1]
 gi|300399475|gb|EFJ83013.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 69-1]
          Length = 693

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDA 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 NDIIDRMRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|288932986|ref|YP_003437045.1| ATP-dependent DNA helicase RecG [Klebsiella variicola At-22]
 gi|290511780|ref|ZP_06551148.1| ATP-dependent DNA helicase RecG [Klebsiella sp. 1_1_55]
 gi|288887715|gb|ADC56033.1| ATP-dependent DNA helicase RecG [Klebsiella variicola At-22]
 gi|289775570|gb|EFD83570.1| ATP-dependent DNA helicase RecG [Klebsiella sp. 1_1_55]
          Length = 693

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 254/685 (37%), Positives = 379/685 (55%), Gaps = 26/685 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PLS+  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLSSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+E+      T+ G +  +S+     RR     ++DGTG +T+ FF     M KN    G
Sbjct: 53  IAELLPGVYATVEGEVL-NSNITFGGRRMLTCQISDGTGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDMSTPELQETLTPVYPTTEGIKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA----KDFEWTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P  +    +      PA++RL  +E
Sbjct: 171 LELLETCAISELLPPELAQ--GMMSLPEALRTLHRPPPSLQLSELESGKHPAQQRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   +P+     +  ++L ++PF PT +Q     +I  DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHALPLGANDTLKNQLLASLPFKPTGAQARVTAEIEHDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAAVRAIAHGKQVALMAPTELLAEQHANNFRSWFEPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA G+  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGEVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 SDIIDRVRNACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGEMHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDP 671
           A      +++   ++ A+HI  + P
Sbjct: 649 ADLLRDQAMIPDVQRIARHIHERYP 673


>gi|205354654|ref|YP_002228455.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207858981|ref|YP_002245632.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224585542|ref|YP_002639341.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|205274435|emb|CAR39467.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710784|emb|CAR35145.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224470070|gb|ACN47900.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|326629792|gb|EGE36135.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 693

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+I+R++   + EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 HEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAIIPEVQRIARHIHERYP--QQAQALIERWMPETERYSNA 693


>gi|269959395|ref|ZP_06173778.1| ATP-dependent DNA helicase RecG [Vibrio harveyi 1DA3]
 gi|269835832|gb|EEZ89908.1| ATP-dependent DNA helicase RecG [Vibrio harveyi 1DA3]
          Length = 693

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 262/696 (37%), Positives = 398/696 (57%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +    +    KR+   + ++DG G ITL FF   T  +KN F  G+ +   G+IK+
Sbjct: 64  IQGKVMAVDT-TFGKRKMLTVKISDGNGTITLRFFNF-TAAMKNNFSNGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F+ S+        +  VY    GL     + +  +ALS L    + E
Sbjct: 122 GGMGLEIVHPDYKFYVSEQKPDVEQSLTPVYPTTDGLRQITLRNLTEQALSLLDKAAVQE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L   +   S  +A + IH P    +     E   PA+ RL  +ELLA  +++L +
Sbjct: 182 LLPSGLYNHQITMS--QALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + ++++ +P+     + +++L  +PFSPT +Q   +K+I  D+ + + M+R++QGDVG
Sbjct: 240 RSKGQQDVALPLASRDSLKKQLLAQLPFSPTNAQARVVKEIEADLEKNHPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIQVGWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           +   L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 360 KEAELARIASGEAKMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQGA 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++   
Sbjct: 420 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 480 LNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQDF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 540 KDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 600 SPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             ++ A++I    P  T+      R L     Y++A
Sbjct: 660 EVQRIARYIHDNYP--TNATAIIDRWLGERDIYSKA 693


>gi|260684132|ref|YP_003215417.1| ATP-dependent DNA helicase RecG [Clostridium difficile CD196]
 gi|260687791|ref|YP_003218925.1| ATP-dependent DNA helicase RecG [Clostridium difficile R20291]
 gi|260210295|emb|CBA64595.1| ATP-dependent DNA helicase [Clostridium difficile CD196]
 gi|260213808|emb|CBE05774.1| ATP-dependent DNA helicase [Clostridium difficile R20291]
          Length = 689

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 249/699 (35%), Positives = 397/699 (56%), Gaps = 19/699 (2%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +L  L+  +   +G+G K +  L+K+            DLL+Y P  F DR+   KI+++
Sbjct: 3   YLLDLYKDVQYVKGIGPKKADKLNKL------GIFTLKDLLYYFPRQFEDRNNLKKIAQL 56

Query: 65  SEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            +   VTI   IS  ++F  ++     KI + D TG   L+FF +    +KN F  G  I
Sbjct: 57  EDGEKVTIKAVISSINTFSPKEGMTLTKIDVKDETGSAKLVFFNKS--YIKNTFRPGDSI 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V GK+KK  N + +      +  +   N      VY L  G++      II   L    
Sbjct: 115 LVFGKVKKKFNNLELTSCELEYLTNSPKNTCRFMPVYQLTYGVTNKEIMSIIRTVLEDKE 174

Query: 184 VL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
           ++  E++ + +++K    SI  A   IH+P   +       A  R+ ++ELL  Q+ L +
Sbjct: 175 LIIQEYMPQRIIEKYRLCSIDFAVRNIHSPSSKESL---KIALYRIVFEELLILQLGLFV 231

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +    KE GI      K  +KI+  +PF  TK+Q  A+ +I+QDM+ +  M R++QGDV
Sbjct: 232 FKSGRNKEDGIKFET-SKDLKKIISALPFKLTKAQNRALDEIIQDMNLEKIMNRLVQGDV 290

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VAL+A+A  V  G Q  +MAP  ILA QHY  + +  ++  I V ++ G++ + 
Sbjct: 291 GSGKTVVALLALANCVLNGYQGALMAPTEILAGQHYISLTESLKDFGINVGLLIGSLTKK 350

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +   LE+I + +  I+IGTHAL +D +++  + LVI DEQHRFGV QR KL+ K   P 
Sbjct: 351 QKDTVLEQIRNNEIDILIGTHALIEDKVEFNNIGLVITDEQHRFGVMQRSKLSLKGANPD 410

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSE 481
           +L+MTATPIPRTL L   GD+DIS I E P GR+PI+T+ I  ++ D      ++  +  
Sbjct: 411 ILVMTATPIPRTLALILYGDLDISIIDELPPGRQPIETIAIEKSKRDRAYNNLVRREVES 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKN 539
           G++ Y +CP +EE +    +S VE    L   +     + ++HG+M   +K+ VM+ FKN
Sbjct: 471 GRQVYIVCPLVEESEAIEAKSAVELVEELRAEYFHDLRLGLLHGKMKSSEKDEVMERFKN 530

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L++TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG   S C+L+Y   
Sbjct: 531 KEIDILVSTTVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGSHKSYCVLIYDSK 590

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +     R+++++ T DGF I+E+DL+ R  GE  G +Q G+P+  +A    H  +L++A
Sbjct: 591 -TDVCRQRMAIMEETNDGFKISEKDLEIRGPGEFFGTRQHGLPELKVANLFKHIKILKLA 649

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
           +++A++IL +D +L      +++  + + ++ +  + I 
Sbjct: 650 QQEARYILGEDNNLQLKENMALKKEI-IDKFKDTLKEIS 687


>gi|48727546|gb|AAT46072.1| RecG [Vibrio alginolyticus]
          Length = 693

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 264/707 (37%), Positives = 402/707 (56%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG K +  L+K+            DLLF+ P  + DR     
Sbjct: 1   MSAQMLSAI--PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++       + G +    +    KR+   + ++DG G ITL FF   T  +KN F  G
Sbjct: 53  IAKLHAGLWAAVQGKVMAIDT-TFGKRKMLTVKISDGNGTITLRFFNF-TAAMKNNFSNG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + +   G+IK+    + +VHP Y F+ S+        +  VY    GL     + +  +A
Sbjct: 111 KLVHAYGEIKRGGMGLEIVHPDYKFYVSEQNPDVEQSLTPVYPTTDGLRQITLRNLTEQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDE 232
           LS L    + E +   L   +   S  +A + IH P    +     E   PA+ RL  +E
Sbjct: 171 LSLLDKAAVQELLPSGLYDHQITMS--QALHTIHRPPPTINLDEFDEGKHPAQIRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R + ++++ +P+     + +++L  +PFSPT SQ   +K+I  D+ + +
Sbjct: 229 LLAQNLSMLAVRSKGQQDVALPLASCDSLKKQLLAQLPFSPTNSQARVVKEIEADLEKTH 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIQV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    +   L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKLKGKAKEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQ----KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           +L +    +   PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + 
Sbjct: 409 ELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           D+++ER++   L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM 
Sbjct: 469 DDIVERVRNACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM  FK+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQDFKDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLYH PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F I
Sbjct: 589 SVASHCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKI 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A       L+   ++ A++I    P  T+      R L     Y++A
Sbjct: 649 ADLVRDQRLIPEVQRIARYIHDNYP--TNATAIIDRWLGERDIYSKA 693


>gi|16767029|ref|NP_462644.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167549006|ref|ZP_02342765.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167992300|ref|ZP_02573398.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168233269|ref|ZP_02658327.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168818424|ref|ZP_02830424.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194472508|ref|ZP_03078492.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|198244513|ref|YP_002217704.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|16422313|gb|AAL22603.1| DNA helicase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194458872|gb|EDX47711.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197939029|gb|ACH76362.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205325757|gb|EDZ13596.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205329408|gb|EDZ16172.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332535|gb|EDZ19299.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205344506|gb|EDZ31270.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|261248892|emb|CBG26746.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996008|gb|ACY90893.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160281|emb|CBW19804.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914770|dbj|BAJ38744.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320088165|emb|CBY97927.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321226798|gb|EFX51848.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323132105|gb|ADX19535.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326625489|gb|EGE31834.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|332990593|gb|AEF09576.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 693

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+I+R++   + EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 HEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRIARHIHERYP--QQAQALIERWMPETERYSNA 693


>gi|218708221|ref|YP_002415842.1| ATP-dependent DNA helicase RecG [Vibrio splendidus LGP32]
 gi|218321240|emb|CAV17190.1| ATP-dependent DNA helicase recG [Vibrio splendidus LGP32]
          Length = 696

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 268/705 (38%), Positives = 395/705 (56%), Gaps = 28/705 (3%)

Query: 5   FLNPLFA--PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
            ++ LF+  PL++  GVG K +  L K+            DLLF+ P  + DR     I 
Sbjct: 4   VMSQLFSAIPLNSLSGVGAKVAEKLEKV------GLNNVQDLLFHLPLRYEDRTRIYPIV 57

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           ++       + G +    +    KR+   + ++DG G ITL FF     M KN F EG++
Sbjct: 58  KLHAGLWAAVQGKVMHVDTI-FGKRKMLAVKISDGNGTITLRFFNFTAGM-KNNFAEGKQ 115

Query: 123 ITVTGKIKKLKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           +   G+IK+    + +VHP Y F     Q      +  VY    GL     + +  +AL 
Sbjct: 116 VHAYGEIKRGNMGLEIVHPDYKFFAPRQQPDVEANLTPVYPTTEGLRQVTLRNLTDQALE 175

Query: 181 RLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELL 234
            +    + E +   L   +   ++A+A + IH P    D E       PA+ RL  +ELL
Sbjct: 176 LIDKAAVNELLPSGLYDHQ--ITLAQALHTIHRPPPGIDLELFDEGKHPAQLRLIMEELL 233

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A  +++L +R + +++  +P      +  K+L  +PFSPT +Q    K+I  D+ + + M
Sbjct: 234 AQNLSMLSVRSKGQQDKAMPFPPVNTLKDKLLAQLPFSPTNAQARVTKEIEADLEKPHPM 293

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           +R++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  
Sbjct: 294 MRLVQGDVGSGKTLVAALAAVRALEHGQQVALMAPTELLAEQHAINFANWFEAMGIQVGW 353

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           + G +    R   L RIA G+A +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL+L
Sbjct: 354 LAGKLKGKARETELTRIASGEAQMVVGTHALFQEHVEFKNLGLVIIDEQHRFGVHQRLEL 413

Query: 415 TQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            +K       PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+
Sbjct: 414 REKGAKQGYYPHQLVMTATPIPRTLAMTAYADLETSIIDELPPGRTPIQTVAIPDTKRDD 473

Query: 471 VIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528
           ++ER+K   L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   
Sbjct: 474 IVERVKNACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPA 533

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +K++VM  FK     LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  
Sbjct: 534 EKQAVMQEFKENKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSV 593

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            S C+LLYH PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA 
Sbjct: 594 ASHCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIAD 653

Query: 649 PELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
                 L+   ++ A+HI    PD  + +    R L     Y++A
Sbjct: 654 LVRDQRLIPEVQRIARHIHDSYPD--NAKAIINRWLGERDVYSKA 696


>gi|237728948|ref|ZP_04559429.1| ATP-dependent DNA helicase RecG [Citrobacter sp. 30_2]
 gi|226909570|gb|EEH95488.1| ATP-dependent DNA helicase RecG [Citrobacter sp. 30_2]
          Length = 693

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 257/689 (37%), Positives = 378/689 (54%), Gaps = 26/689 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MKGRLLDAI--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L  L    + E +  +LLQ     S+ EA   +H P  +    D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIAELLPPELLQ--GMMSLPEALRTLHRPPPSLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q     +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANNALKDKLLAALPFKPTGAQAHVTAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 SDIIDRVRNACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+SVM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQSVMAAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGTAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTS 675
           A      +++   ++ A+HI  + P   +
Sbjct: 649 ADLLRDQAIIPEVQRIARHIHERYPQQAA 677


>gi|156972947|ref|YP_001443854.1| ATP-dependent DNA helicase [Vibrio harveyi ATCC BAA-1116]
 gi|156524541|gb|ABU69627.1| hypothetical protein VIBHAR_00625 [Vibrio harveyi ATCC BAA-1116]
          Length = 693

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 257/674 (38%), Positives = 390/674 (57%), Gaps = 24/674 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F  G+ +   G+IK+
Sbjct: 64  VQGKVMAVDT-TFGKRKMLTVKISDGNGTITLRFFNF-TAAMKNNFSNGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F+ S+        +  VY    GL     + +  +ALS L    + E
Sbjct: 122 GGMGLEIVHPDYKFYVSEQKPDVEQSLTPVYPTTDGLRQITLRNLTEQALSLLDKAAVQE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L   +   S  +A + IH P    +     E   PA+ RL  +ELLA  +++L +
Sbjct: 182 LLPSGLYDHQITMS--QALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + +K++ +P+     + +++L  +PFSPT +Q   +K+I  D+ + + M+R++QGDVG
Sbjct: 240 RSKGQKDVALPLASCDSLKKQLLAQLPFSPTNAQARVVKEIEADLEKTHPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIQVGWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           +   L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 360 KEAELARIASGEAKMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQGA 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++   
Sbjct: 420 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 480 LNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQDF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 540 KDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 600 SPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLIP 659

Query: 658 IARKDAKHILTQDP 671
             ++ A++I    P
Sbjct: 660 EVQRIARYIHDNYP 673


>gi|238789530|ref|ZP_04633314.1| ATP-dependent DNA helicase recG [Yersinia frederiksenii ATCC 33641]
 gi|238722283|gb|EEQ13939.1| ATP-dependent DNA helicase recG [Yersinia frederiksenii ATCC 33641]
          Length = 693

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 264/707 (37%), Positives = 394/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLST  GVG   +  L+K+            DLL + P  + DR    +
Sbjct: 1   MKGRLLDAV--PLSTLSGVGASQAGKLAKM------GLETIQDLLLHLPLRYEDRTRLYR 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++     VT+ G + + S     +RR     + DGTG +TL FF     M KN    G
Sbjct: 53  IGDLLPGLSVTVEGEVIR-SDISFGRRRMMTSQITDGTGVLTLRFFNFNAAM-KNSLSPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + +   G+ K+      ++HP Y  H           +  VY    G+     +K+I +A
Sbjct: 111 KHVIAYGEAKRGNTGPEIIHPEYRVHGENIGVELQESLTPVYPTTEGIRQATLRKLIDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK---DFE-WTSPARERLAYDE 232
           L+ L   V+ E +  +L   +S  S+ EA + +H P       D E    PA+ RL  +E
Sbjct: 171 LAMLDTCVIAELLPIEL--SRSLISLPEAIHTLHRPPADIQLFDLEQGKHPAQRRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +    +P+  E ++ Q+ L  +PF+PT++Q+  + +I QDM+   
Sbjct: 229 LLAHNLSMLAVRAGAQSYRALPLLAEEQLKQRFLAALPFTPTRAQQRVVAEIEQDMTHNF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V
Sbjct: 289 PMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLEPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E +A GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAVASGQVSMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            +VI+R+K   L EG++AYW+C  IEE +    ++       L        + ++HGRM 
Sbjct: 469 SDVIQRVKNACLEEGRQAYWVCTLIEESELLEAQAAEVTCEELRVALPEIKVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 529 GPEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+H+  Q P+    R    R L    +Y  A
Sbjct: 649 ADLLRDQAMIPEVQRVARHLHQQYPE--HARALIERWLPERTRYTNA 693


>gi|168241924|ref|ZP_02666856.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194447704|ref|YP_002047775.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194406008|gb|ACF66227.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205338824|gb|EDZ25588.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 693

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+I+R++   + EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 HEIIDRVRNACTTEGRQAYWVCTLIEESGLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRIARHIHERYP--QQAQALIERWMPETERYSNA 693


>gi|197251387|ref|YP_002148675.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197215090|gb|ACH52487.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 693

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 255/696 (36%), Positives = 383/696 (55%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG   S  L+KI            DLL + P  + DR +   I E+      T
Sbjct: 10  PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  + +     RR     ++DG+G +T+ FF     M KN    GR++   G+ K+
Sbjct: 64  VEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATGRRVLAYGEAKR 121

Query: 132 LKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
            K    M+HP Y              +  VY    G+     +K+  +AL  L    + E
Sbjct: 122 GKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAIAE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDELLAGQIALLLM 243
            +  +L Q     S+ EA   +H P       D E    PA+ RL  +ELLA  +++L +
Sbjct: 182 LLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSMLAL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   ++    P++    +  K+L ++PF+PT +Q   + +I +DM+    M+R++QGDVG
Sbjct: 240 RAGAQRYHAQPLSTNNILKDKLLASLPFTPTSAQARVVAEIERDMALDVPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G      
Sbjct: 300 SGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT----QKAT 419
           R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L     Q+  
Sbjct: 360 RQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGF 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRT+ +T+  D+D S I E P GR P+ TV IP  R  E+I+R++   
Sbjct: 420 HPHQLIMTATPIPRTMAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRNAC 479

Query: 480 S-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           + EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM +F
Sbjct: 480 TTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 540 KQGELHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      +++ 
Sbjct: 600 SPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 660 EVQRIARHIHERYP--QQAQALIERWMPETERYSNA 693


>gi|62182238|ref|YP_218655.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62129871|gb|AAX67574.1| DNA helicase, resolution of Holliday junctions, branch migration
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
          Length = 693

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGTEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPMLQLADLETGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+I+R++   + EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 HEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
             +S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVVSHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAIIPEVQRIARHIHERYP--QQAQALIERWMPETERYSNA 693


>gi|253700922|ref|YP_003022111.1| ATP-dependent DNA helicase RecG [Geobacter sp. M21]
 gi|251775772|gb|ACT18353.1| ATP-dependent DNA helicase RecG [Geobacter sp. M21]
          Length = 772

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 249/710 (35%), Positives = 388/710 (54%), Gaps = 27/710 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
               L  P+ + +GVG K +  LSK             D L+  P+ + DR    KI+++
Sbjct: 68  IPEELKTPMQSIKGVGPKLAATLSK------KGLNTVEDALYLLPNRYEDRRELKKIAQL 121

Query: 65  SEERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                      +    +      RR ++ ++ D TG + L +F+     L      GRK 
Sbjct: 122 RPGNSEAFFATVVSAGAQTTKGGRRYFEAIVKDETGSLPLKWFHFHPNFLAKQLVPGRKG 181

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDV----------NFPLIEAVYSLPTGLSVDLFKK 173
              G + +   +  M HP   +    +           NF  I  VY L  G+S  + ++
Sbjct: 182 IFIGDVAQFGFQREMHHPEVEWAVEGEDLSQVMARDPDNFGSILPVYPLTEGVSQKVMRR 241

Query: 174 IIVEALSRLPVLPE-WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR----ERL 228
           I+ +A+ R     +  +  +LL++     +  A    H P +  D    +  R      L
Sbjct: 242 IMRDAVQRYSRYVKGALPDELLRRHQLLPLPVALRDAHLPAQDSDLSALNSGRSAAHRSL 301

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
           A+DEL   Q+ L L ++    E GI   V  +  +++L+ +PFS T +Q+  + +I +DM
Sbjct: 302 AFDELFFLQMGLALKKRGIAVEDGISFQVTHRYTKELLKLLPFSLTAAQKRVLSEIKEDM 361

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
              + M R++QGDVG GKTLVAL+A    VE   Q  IMAP  +LA+QHY  I  Y +N 
Sbjct: 362 MSPHPMHRLVQGDVGCGKTLVALMAALVCVENDYQVAIMAPTELLAEQHYLNIHGYCENL 421

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            I V ++T ++        L++IA G   I++GTHA+ Q+ +++ +L L I+DEQHRFGV
Sbjct: 422 GINVALLTASVKGK--GDTLDKIASGATQIVVGTHAVIQEKVEFNRLGLGIIDEQHRFGV 479

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            QR  L +K   P +L+MTATPIPRTL +T  GD+ +S I E P GR PI+T ++  +R 
Sbjct: 480 VQRALLKKKGANPDILVMTATPIPRTLSMTVFGDLSLSVIDELPPGRTPIETRMVRESRR 539

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMS 526
            EV   ++   ++G++AY I P +EE ++S+ ++ V+    L +       +A++HGRM 
Sbjct: 540 KEVYALVREEAAKGRQAYVIYPLVEETEKSDLKAAVQMAEHLAQEVFPDLRVAVLHGRMP 599

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +KE+VM  FK G+  +L+ATTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRVGRG
Sbjct: 600 AAEKEAVMKEFKAGSTDILVATTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVGRG 659

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            E S CILL    LS++   RL V+  + DGF+IAE DL+ R  G+ LG +Q+G+P+  +
Sbjct: 660 SERSRCILLAGDKLSEDGQKRLEVMVQSSDGFVIAEADLQIRGPGDFLGTRQAGLPELRV 719

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
           A       +LE ARKDA  ++ +DP+LT+   + +R  + L ++    + 
Sbjct: 720 ADILRDGGVLEQARKDAFALVERDPELTAPGHERLRGEMML-RWGGRLEL 768


>gi|262273556|ref|ZP_06051370.1| ATP-dependent DNA helicase RecG [Grimontia hollisae CIP 101886]
 gi|262222534|gb|EEY73845.1| ATP-dependent DNA helicase RecG [Grimontia hollisae CIP 101886]
          Length = 693

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 257/707 (36%), Positives = 394/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR S L+ +  P+++  GVG K +  L K+            DLLF+ P  + DR     
Sbjct: 1   MRASMLDAV--PVTSLTGVGGKMAEKLEKL------GLFTVQDLLFHLPYRYEDRTRVWP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I  +   +  T+ G +  +++    +RR   + + DG G +TL FF     M KN   +G
Sbjct: 53  IMSLMPGQHATVEGEVVSNNTV-FGRRRMLTVKITDGNGSLTLRFFNFNAAM-KNSLEQG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA--VYSLPTGLSVDLFKKIIVEA 178
           +++   G+IK+ ++ + ++HP Y   +             VY    GL     + +  +A
Sbjct: 111 KRVKAYGEIKRGQSGLEIIHPEYKVFSEPTELTLEETLTPVYPTTEGLRQLTLRNLTSQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E + + L  ++   ++ +A  I+H P              PA++RL  +E
Sbjct: 171 LALLDGAAVQELLPEGLYDRQ--ITLRDALKILHRPTPDISVAQLEKGEHPAQKRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R + +++    +    ++  K+L ++PFSPT +Q   + DI +DM    
Sbjct: 229 LLAQNLSMLAVRSKLQQDPTFSLPPSTELKPKLLASLPFSPTGAQSRVVADIERDMGLNK 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALQAIEQGYQVALMAPTELLAEQHAINFANWLEPLGISV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    +   L  IA G+A +++GTHALFQ  +++ KL LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKLTGKAKEAQLASIASGEAKMVVGTHALFQKQVEFDKLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           +L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR PI+TV +P  R 
Sbjct: 409 ELREKGMKQGIHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPIQTVAVPDTRR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I       + EG++AYW+C  I+E +    ++  +  + L        I ++HGRM 
Sbjct: 469 IDIINRVHAACIGEGRQAYWVCTLIDESEVLEAQAAADTADDLARALPDLKIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 AAEKQAVMQAFKAGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLYH PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+ +F I
Sbjct: 589 SVASHCVLLYHAPLSKTATQRLGVLRESSDGFVIAQRDLEIRGPGELLGTKQTGIAEFKI 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A       L+   +K A ++    P+  + +    R L    +Y+ A
Sbjct: 649 ADLVRDQKLIPEVQKLALYLHQHYPE--NAKAIITRWLGSKDKYSNA 693


>gi|238759851|ref|ZP_04621007.1| ATP-dependent DNA helicase recG [Yersinia aldovae ATCC 35236]
 gi|238701912|gb|EEP94473.1| ATP-dependent DNA helicase recG [Yersinia aldovae ATCC 35236]
          Length = 693

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 393/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLST  GVG   +  L+K+            DLL + P  + DR    +
Sbjct: 1   MKGRLLDAV--PLSTLSGVGASQAGKLAKM------GLETIQDLLLHLPLRYEDRTRLYR 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++     VT+ G + + S     +RR     ++DG+G +TL FF     M KN    G
Sbjct: 53  IGDLMPGLSVTVEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + +   G+ K+      ++HP Y  H           +  +Y    G+     +K+I +A
Sbjct: 111 KHVIAYGEAKRGNTGPEIIHPEYRVHGENIGVELQESLTPIYPTTEGIRQATLRKLIDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L+ L   V+ E +  +L   +S  S+ EA + +H P       D E    PA+ RL  +E
Sbjct: 171 LAMLDTSVIAELLPIEL--SRSLISLPEAIHTLHRPPADIQLADLEQGKHPAQRRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +    +P+  E ++ Q+ L  +PF+PT +Q   + +I QDM+   
Sbjct: 229 LLAHNLSMLAVRAGAQSYRALPLLAEEQLKQRFLAALPFTPTGAQRRVVAEIEQDMTHNF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V
Sbjct: 289 PMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHAATFRQWLEPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E +A GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARIAQQEAVASGQVSMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            +V++R+K   L EG++AYW+C  IEE +    ++       L        + ++HGRM 
Sbjct: 469 SDVVQRVKNACLEEGRQAYWVCTLIEESELLEVQAAEVTCEELKIALPEIKVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 529 GPEKQAVMLAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQRRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+H+  Q P+    +    R L    +Y  A
Sbjct: 649 ADLLRDQAMIPEVQRVARHLHQQYPE--HAQALIERWLPERVRYTNA 693


>gi|222055696|ref|YP_002538058.1| ATP-dependent DNA helicase RecG [Geobacter sp. FRC-32]
 gi|221564985|gb|ACM20957.1| ATP-dependent DNA helicase RecG [Geobacter sp. FRC-32]
          Length = 770

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 242/709 (34%), Positives = 371/709 (52%), Gaps = 25/709 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG K +  L+K         +   D LF  P  + DR    K+S++    
Sbjct: 68  LQTPMQFIKGVGPKLAEQLAK------KGISVVEDALFLLPHRYEDRRSLSKVSKLRPGA 121

Query: 69  IVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
                  +           +R  ++   D +G ITL +F      +K  +  GRK   TG
Sbjct: 122 HEVFYAEVLSFEAKSTKGGKRFLEVTAGDESGSITLKWFRFNPVFMKKTWRVGRKGVFTG 181

Query: 128 KIKKLKNRIIMVHPHYIFHNS----------QDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           ++ +   +  + HP   + +             +NF  I  VY L  GL     +K++ E
Sbjct: 182 EVVQYGFQKEIHHPEVEWLDEGADLAALTARDPLNFGRILPVYPLTEGLHQKTLRKVMKE 241

Query: 178 ALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDE 232
            + R  +  E  +   ++++     + EA    H P    D        + A +  ++DE
Sbjct: 242 VIDRFVIDVENHLPLGVMERHHLMPLDEALRETHFPGHDADLARLNNGATVAHKTFSFDE 301

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           L   ++ L L R     E GI   V  K  +++L+ +PF  T +Q   + +I  DM   +
Sbjct: 302 LFFLELGLALKRSGIVLEQGIAFQVTHKYTRELLKLLPFHLTDAQRRVLSEIKNDMMLPH 361

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++QGDVG GKTLVAL+A   AVE   Q  IMAP  ILA+QH+  I ++     I V
Sbjct: 362 PMHRLVQGDVGCGKTLVALMAALVAVENDYQVAIMAPTEILAEQHFLTIHRWCDALGIKV 421

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++T  M    +   LE IA G+  I+IGTHA+ Q+ +++ +L L I+DEQHRFGV QR 
Sbjct: 422 SLLTSGMKGKAKSAVLEEIAAGRTSIVIGTHAVIQEKVEFNRLGLGIIDEQHRFGVLQRG 481

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L +K   P +L+MTATPIPRTL +T  GD+ +S I E P GR P++T +   +R  +V 
Sbjct: 482 ILKRKGINPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPVETRVAFESRRSQVY 541

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDK 530
             ++  + +G++AY I P +EE ++S  ++  +    L         + ++HGRM   +K
Sbjct: 542 GIIREEVKKGRQAYIIYPLVEETEKSELKAAAQMAEHLARDVFPELRVGLLHGRMKPEEK 601

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           ESVM +FK     +L+ATTVIEVGIDV +A+++++E+AE FGL+QLHQLRGRVGRG   S
Sbjct: 602 ESVMGAFKARETDILVATTVIEVGIDVPNATVMVVEHAERFGLSQLHQLRGRVGRGSGQS 661

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            CILL    LS++   RL V+++T DGF IAE DL+ R  G+ LG +Q+G+P F +A   
Sbjct: 662 RCILLSSGQLSEDGEKRLRVMESTNDGFRIAEADLEIRGPGDFLGTRQAGLPDFRVANIL 721

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
               +LE AR +A  ++ +DP L       +R  L + ++    +    
Sbjct: 722 RDGRILEAARGEAFAVVERDPGLVDGENAGLRQEL-VRRWGGRLELAAI 769


>gi|293417113|ref|ZP_06659740.1| ATP-dependent DNA helicase RecG [Escherichia coli B185]
 gi|291431144|gb|EFF04137.1| ATP-dependent DNA helicase RecG [Escherichia coli B185]
          Length = 693

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 258/707 (36%), Positives = 383/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLQTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALNV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLSE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++      G +AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACMTGGCQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|218707286|ref|YP_002414805.1| ATP-dependent DNA helicase RecG [Escherichia coli UMN026]
 gi|293407275|ref|ZP_06651199.1| ATP-dependent DNA helicase recG [Escherichia coli FVEC1412]
 gi|298383021|ref|ZP_06992616.1| ATP-dependent DNA helicase recG [Escherichia coli FVEC1302]
 gi|300898587|ref|ZP_07116917.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 198-1]
 gi|331665277|ref|ZP_08366178.1| ATP-dependent DNA helicase RecG [Escherichia coli TA143]
 gi|331685314|ref|ZP_08385900.1| ATP-dependent DNA helicase RecG [Escherichia coli H299]
 gi|218434383|emb|CAR15309.1| ATP-dependent DNA helicase [Escherichia coli UMN026]
 gi|284923714|emb|CBG36811.1| ATP-dependent DNA helicase [Escherichia coli 042]
 gi|291426086|gb|EFE99120.1| ATP-dependent DNA helicase recG [Escherichia coli FVEC1412]
 gi|298276857|gb|EFI18375.1| ATP-dependent DNA helicase recG [Escherichia coli FVEC1302]
 gi|300357750|gb|EFJ73620.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 198-1]
 gi|331057787|gb|EGI29773.1| ATP-dependent DNA helicase RecG [Escherichia coli TA143]
 gi|331077685|gb|EGI48897.1| ATP-dependent DNA helicase RecG [Escherichia coli H299]
          Length = 693

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDA 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 NDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|218702421|ref|YP_002410050.1| ATP-dependent DNA helicase RecG [Escherichia coli IAI39]
 gi|218372407|emb|CAR20281.1| ATP-dependent DNA helicase [Escherichia coli IAI39]
          Length = 693

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 NDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|253690573|ref|YP_003019763.1| ATP-dependent DNA helicase RecG [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251757151|gb|ACT15227.1| ATP-dependent DNA helicase RecG [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 693

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 251/686 (36%), Positives = 387/686 (56%), Gaps = 26/686 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   LN    PLST  GVG   +  L+++            DLL + P  + DR +   
Sbjct: 1   MKGRLLN--TQPLSTLTGVGASQAAKLARL------GLETVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      T+ G I + +      RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGDLLPGMYATVEGEILR-NDITFGSRRMLTCQISDGSGMLTMRFFNFNAAM-KNSLAPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++T  G+IK+ K    ++HP Y     N+Q      +  VY    G+     +K+  +A
Sbjct: 111 QRVTAYGEIKRGKIGAEIIHPEYRVQGDNTQVELQESLTPVYPSTEGIRQATLRKLTDQA 170

Query: 179 LSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA----KDFEWTSPARERLAYDE 232
           L  L    + E + + L   +S  S+ +A   +H P       +      PA++RL  +E
Sbjct: 171 LELLAANHIDELLPESL--SRSLISLPDALRTLHRPPPDMQLSELEHGKHPAQQRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P+  +  + Q++L  +PF+PT++QE  + +I  DM++  
Sbjct: 229 LLAHNLSMLAVRAGEQRHKASPLQAQDGLKQRLLAALPFNPTQAQERVVAEIEADMAKDF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIANGKQVALMAPTELLAEQHAHNFRQWFEPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   + IA+GQ  +++GTHA+FQ  +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQDAIANGQVSMVVGTHAIFQQQVKFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDSRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +++IER+      EG++AYW+C  IEE      ++       L     +  + ++HGRM 
Sbjct: 469 NDIIERVNSACQQEGRQAYWVCTLIEESDLLEAQAAEATSEELKAALPNLKVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 AQEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  P+SK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPMSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A       L+   ++ A+H+    P+
Sbjct: 649 ADLLRDQDLIPQVQRVARHLHEHYPE 674


>gi|330812612|ref|YP_004357074.1| ATP-dependent DNA helicase, recG [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380720|gb|AEA72070.1| ATP-dependent DNA helicase, recG [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 691

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 258/694 (37%), Positives = 391/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++T +GVG+  +  L+K+            D+LF+ P  + DR     I  +   +   
Sbjct: 8   PVTTLKGVGEAMAEKLAKV------GLENLQDVLFHLPLRYQDRTRVVPIGHLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + +RR   + L DGTG ++L F++      K     G ++   G+ + 
Sbjct: 62  IEGTV-SGADVVMGRRRSLVVRLQDGTGGLSLRFYHFSNAQ-KEGLKRGTRVRCYGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  VY L  GL+    +++  + L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPPPVDETLTPVYPLTEGLTQQRLRQLCQQTLTLLGPSSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+  +L +      +A+A   +H+P    D +        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPTELARDYHLAPLADAIRYLHHPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  +      +     +  + L N+ F+PT +Q+    +I  D+SQ   MLR++QGDVG
Sbjct: 240 RESLRSLRAPAMPKARDLPARYLANLGFTPTGAQQRVGNEIAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT+VA +A   A+EAG Q  +MAP  ILA+QH+   +++ +   I V  + G +   +
Sbjct: 300 AGKTVVAALAALQALEAGYQVALMAPTEILAEQHFITFQRWLEPLGIEVAWLAGKLKGKN 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----AT 419
           R  AL +IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L QK      
Sbjct: 360 RTTALAQIAEGAP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRQKGVGGRM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++   R  EVIER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERVRSAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K +VM  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCQAAETTYEDLTAALGELKVGLIHGRMKPAEKAAVMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYHP
Sbjct: 539 AGALQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + PD  S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPDHVSPL--LDRWLRHGQQYGQ 690


>gi|206577391|ref|YP_002235980.1| ATP-dependent DNA helicase RecG [Klebsiella pneumoniae 342]
 gi|206566449|gb|ACI08225.1| ATP-dependent DNA helicase RecG [Klebsiella pneumoniae 342]
          Length = 693

 Score =  595 bits (1534), Expect = e-167,   Method: Composition-based stats.
 Identities = 254/685 (37%), Positives = 379/685 (55%), Gaps = 26/685 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PLS+  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLSSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+E+      T+ G +  +S+     RR     ++DGTG +T+ FF     M KN    G
Sbjct: 53  IAELLPGVYATVEGEVL-NSNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDMSTPELQETLTPVYPTTEGIKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA----KDFEWTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P  +    +      PA++RL  +E
Sbjct: 171 LELLETCAISELLPPELAQ--GMMSLPEALRTLHRPPPSLQLSELESGKHPAQQRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   +P+     +  ++L ++PF PT +Q     +I  DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHALPLGANDTLKNQLLASLPFKPTGAQARVTAEIEHDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAAVRAIAHGKQVALMAPTELLAEQHANNFRSWFEPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA G+  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGEVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 SDIIDRVRNACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGEMHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDP 671
           A      +++   ++ A+HI  + P
Sbjct: 649 ADLLRDQAMIPDVQRIARHIHERYP 673


>gi|323975129|gb|EGB70234.1| ATP-dependent DNA helicase RecG [Escherichia coli TW10509]
          Length = 693

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSMPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 NDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|268317690|ref|YP_003291409.1| ATP-dependent DNA helicase RecG [Rhodothermus marinus DSM 4252]
 gi|262335224|gb|ACY49021.1| ATP-dependent DNA helicase RecG [Rhodothermus marinus DSM 4252]
          Length = 700

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 245/707 (34%), Positives = 387/707 (54%), Gaps = 22/707 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           LN L   +    GVG + +  L+++            DLL Y P  ++DR     +  + 
Sbjct: 4   LNILSTEVRYLAGVGPRRAEVLARV------GVHTVRDLLHYFPRRYLDRSTIVPLRRLD 57

Query: 66  EER-IVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKI 123
           E    VT+ G +      + + R+ ++++L D +G  +  ++F R    +   F  G ++
Sbjct: 58  ERMGSVTVVGTVRVAGVVEGKGRKRFELILEDESGGRLKCVWFNR-LNWVAKAFKPGDRV 116

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPT-----GLSVDLFKKIIV 176
              GK+++      M HP +   + +        I A+Y         GL+   F++I+ 
Sbjct: 117 AFHGKVQRFGYTFSMTHPDFDRLDGEGAALATGRIIALYPGGAALEKVGLTSRTFRRILY 176

Query: 177 EALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
               +  + LPE + + +  +        A   +H PR   +    + ARERL ++EL  
Sbjct: 177 TFFKQHGLKLPEILPEWIRTRYGLMDGRVALRAVHFPRSQAEL---AQARERLKFEELFF 233

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRM 294
            Q+ L   ++  +   G      G+   + L   +PF  T +Q+ A++DI++D +   +M
Sbjct: 234 IQLMLARTKQIRQAVAGPRFGPPGERFHRFLNEILPFELTNAQKRALEDIIRDTTSGLQM 293

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++QGDVGSGKT+VA+ A+  AV+ G Q+  M P  ILA+QHY  +++Y     + V +
Sbjct: 294 NRLIQGDVGSGKTVVAMAAILHAVDNGYQSAFMVPTEILAEQHYANMRRYLDPLGVEVRL 353

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           + G   ++ R + L  +A G+AH+ +GTHA+ Q+++Q+++L L IVDEQHRFGV QR +L
Sbjct: 354 LLGGQRKSLREEILADLAEGRAHVAVGTHAVIQETVQFHRLGLAIVDEQHRFGVVQRAEL 413

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K   PH+LLMTATPIPR+L +T  GD+D+S I E+PAGRKP+ T I    R  EV   
Sbjct: 414 FSKGENPHMLLMTATPIPRSLAMTLYGDLDVSIIDERPAGRKPVITWIRSEKRRGEVYAF 473

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESV 533
           L+  L +G++AY + P +EE ++ + +     +  L E F    + +IHGRM   +KE  
Sbjct: 474 LREQLRQGRQAYVVYPLVEESEKMDLQDAENGYRRLKELFRPYRVDLIHGRMLPYEKEEA 533

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M+ FKNG   +L+ATTVIEVG+DV +A+++IIE+AE FGL+QLHQLRGRVGRG E S CI
Sbjct: 534 MERFKNGETDILVATTVIEVGVDVPNATVMIIEHAERFGLSQLHQLRGRVGRGAEQSYCI 593

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+     +  +  RL V+  T+DGF I+E DLK R  G+  G +QSG+P   IA      
Sbjct: 594 LMVDHRRTAEAEERLRVMAETDDGFKISEMDLKLRGAGDFFGTRQSGLPDLKIADITQDQ 653

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            +L  AR+ A  ++ +DP+L +     +R     +    +  F R G
Sbjct: 654 PILIKAREAAFELIRRDPNLEAPEHAMLRAYYDRFYATRSLGFARVG 700


>gi|238910215|ref|ZP_04654052.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 693

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 258/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+I+R++   + EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 HEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRIARHIHERYP--QQAQALIERWMPETERYSNA 693


>gi|255101722|ref|ZP_05330699.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-63q42]
 gi|255307591|ref|ZP_05351762.1| ATP-dependent DNA helicase RecG [Clostridium difficile ATCC 43255]
          Length = 685

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 248/695 (35%), Positives = 394/695 (56%), Gaps = 19/695 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L+  +   +G+G K +  L+K+            DLL+Y P  F DR+   KI+++ +  
Sbjct: 3   LYKDVQYVKGIGPKKADKLNKL------GIFTLKDLLYYFPRQFEDRNNLKKIAQLEDGE 56

Query: 69  IVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            VTI   IS  ++F  ++     KI + D TG   L+FF +    +KN F  G  I V G
Sbjct: 57  KVTIKAVISSINTFSPKEGMTLTKIDVKDETGSAKLVFFNKS--YIKNTFRPGDSILVFG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-P 186
           K+KK  N + +      +  +   N      VY L  G++      II   L    ++  
Sbjct: 115 KVKKKFNNLELTSCELEYLTNSPKNTCRFMPVYQLTYGVTNKEIMSIIRTVLEDKELIIQ 174

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E++ + +++K    SI  A   IH+P   +       A  R+ ++ELL  Q+ L + +  
Sbjct: 175 EYMPQRIIEKYRLCSIDFAVRNIHSPSSKESL---KIALYRIVFEELLILQLGLFVFKSG 231

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
             KE GI      K  +KI+  +PF  TK+Q  A+ +I+QDM+ +  M R++QGDVGSGK
Sbjct: 232 RNKEDGIKFET-SKDLKKIISALPFKLTKAQNRALDEIIQDMNLEKIMNRLVQGDVGSGK 290

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VAL+A+A  V  G Q  +MAP  ILA QHY  + +  ++  I V ++ G++ +  +  
Sbjct: 291 TVVALLALANCVLNGYQGALMAPTEILAGQHYISLTESLKDFGINVGLLIGSLTKKQKDT 350

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE+I + +  I+IGTHAL +D +++  + LVI DEQHRFGV QR KL+ K   P +L+M
Sbjct: 351 VLEQIKNNEIDILIGTHALIEDKVEFNNIGLVITDEQHRFGVMQRSKLSLKGANPDILVM 410

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKA 485
           TATPIPRTL L   GD+DIS I E P GR+PI+T+ I  ++ D      ++  +  G++ 
Sbjct: 411 TATPIPRTLALILYGDLDISIIDELPPGRQPIETIAIEKSKRDRAYNNLVRREVESGRQV 470

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP +EE +    +S VE    L   +     + ++HG+M   +K+ VM  FKN    
Sbjct: 471 YIVCPLVEESEAIEAKSAVELVEELRAEYFHDLRLGLLHGKMKSSEKDEVMRLFKNKEID 530

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG   S C+L+Y    +  
Sbjct: 531 ILVSTTVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGSHKSYCVLIYDSK-TDV 589

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+++++ T DGF I+E+DL+ R  GE  G +Q G+P+  +A    H  +L++A+++A
Sbjct: 590 CRQRMAIMEETNDGFKISEKDLEIRGPGEFFGTRQHGLPELKVANLFKHIKILKLAQQEA 649

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
           ++IL +D +L      +++  + + ++ +  + I 
Sbjct: 650 RYILGEDNNLQLKENMALKKEI-IDKFKDTLKEIS 683


>gi|302189228|ref|ZP_07265901.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. syringae
           642]
          Length = 691

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 254/694 (36%), Positives = 395/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+K+            D+LF+ P  + DR     I  +   +   
Sbjct: 8   SVTALKGVGEAMAEKLAKV------GLETLQDVLFHLPLRYQDRTRIVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+ ++L +     S+ +A   +H+P    D E        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPEELARDYQLASLDDAIRYLHHPPADADVEELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGDVG
Sbjct: 240 RESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +    
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVDVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K      
Sbjct: 360 RVASLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 QGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPQHVSPL--LDRWLRHGQQYGQ 690


>gi|289578495|ref|YP_003477122.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter italicus Ab9]
 gi|289528208|gb|ADD02560.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter italicus Ab9]
          Length = 681

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 253/691 (36%), Positives = 389/691 (56%), Gaps = 18/691 (2%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL   +   +GVG K +  L K+            DLLFY P  + +R    KI +++  
Sbjct: 2   PLNLDIQYVKGVGPKRAKLLKKL------GIQTVEDLLFYFPKDYENRSSILKIEDLTVG 55

Query: 68  RIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              T  GYI       +  K    K+ + DGTG + L+++ +    +KN    G +  + 
Sbjct: 56  EKQTFKGYIVGSPREIKTSKVIITKVPVKDGTGAVELVWYNQ--PYIKNSLKIGEEYIIN 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVL 185
           GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL   +  +
Sbjct: 114 GKLRFKYGQLIVENPVIEKSEDFKLNTGRIVPIYGLTEGLTQNAIRKIMFNALKEYVQEV 173

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+AL LM+ 
Sbjct: 174 EEFFDEEFLSEKRLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMALFLMKG 230

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             K++ GI    E    +  +  +PF  T++Q   +K+I+ DM+    M R++QGDVGSG
Sbjct: 231 SAKEKKGIKF--ERVDLKPFIMGLPFKLTQAQVKVLKEIIADMNSHKVMNRLVQGDVGSG 288

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  ++++
Sbjct: 289 KTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYSTLKELFKNTDIKIGLLSGSLSPSNKK 348

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE+I  G   II+GTHAL +D + +  L L I DEQHRFGV+QR  LTQK   P VL+
Sbjct: 349 EVLEKIKKGDYDIIVGTHALIEDDVVFNNLGLCITDEQHRFGVRQRALLTQKGKNPDVLV 408

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +G++ 
Sbjct: 409 MTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQV 468

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE  + +  S    +  +++     + + ++HG+M+D +KE V++ F NG   
Sbjct: 469 YVVCPLIEESDKISAMSAEIVYREIYKDAFKEAKVGLLHGKMADSEKEKVIEEFVNGKID 528

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGR E  S CIL+ +   S  
Sbjct: 529 ILVSTTVIEVGVNVPNATVMIIENAERFGLAQLHQLRGRVGRSEFQSYCILISYSN-SDV 587

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL VL  T DGF IAE+DL+ R  GE LG++Q G+P+F IA       +L+I +KD 
Sbjct: 588 AKKRLGVLAQTSDGFKIAEKDLEIRGPGEFLGLRQHGLPEFKIANIVEDIDILKIVQKDV 647

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           + ++ +DP L +       +L   YQ  E  
Sbjct: 648 EELVKKDPKLENYPKIKNILLNQFYQKLEGI 678


>gi|323965918|gb|EGB61366.1| ATP-dependent DNA helicase RecG [Escherichia coli M863]
 gi|327250780|gb|EGE62482.1| ATP-dependent DNA helicase RecG [Escherichia coli STEC_7v]
          Length = 693

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAAQSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSMPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 NDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|309784367|ref|ZP_07679006.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae 1617]
 gi|308927874|gb|EFP73342.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae 1617]
          Length = 693

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 384/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIECDMALNV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|254038853|ref|ZP_04872905.1| ATP-dependent DNA helicase recG [Escherichia sp. 1_1_43]
 gi|226838818|gb|EEH70845.1| ATP-dependent DNA helicase recG [Escherichia sp. 1_1_43]
          Length = 704

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 12  MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 63

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 64  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAG 121

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 122 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 181

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 182 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 239

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 240 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDV 299

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 300 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 359

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 360 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 419

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 420 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 479

Query: 469 DEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R     ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 480 TDIIDRVHHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 539

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 540 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 599

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 600 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 659

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 660 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 704


>gi|218551179|ref|YP_002384970.1| ATP-dependent DNA helicase RecG [Escherichia fergusonii ATCC 35469]
 gi|218358720|emb|CAQ91378.1| ATP-dependent DNA helicase [Escherichia fergusonii ATCC 35469]
          Length = 693

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAAQSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +++I+R++     EG++AYW+C  IEE +    ++    +  L       +I ++HGRM 
Sbjct: 469 NDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|309797606|ref|ZP_07691994.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 145-7]
 gi|308118793|gb|EFO56055.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 145-7]
          Length = 693

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   +P++    +  K+L  +PF PT +Q   + +I  DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHALPLSANDALKNKLLAALPFKPTGAQARVVAEIEHDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|307314263|ref|ZP_07593871.1| ATP-dependent DNA helicase RecG [Escherichia coli W]
 gi|306906086|gb|EFN36605.1| ATP-dependent DNA helicase RecG [Escherichia coli W]
 gi|315062940|gb|ADT77267.1| ATP-dependent DNA helicase [Escherichia coli W]
 gi|323376467|gb|ADX48735.1| ATP-dependent DNA helicase RecG [Escherichia coli KO11]
          Length = 693

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 389/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIEHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            ++K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PVEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|281180698|dbj|BAI57028.1| DNA helicase RecG [Escherichia coli SE15]
          Length = 693

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   AV  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMTSFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|162138336|ref|YP_543156.2| ATP-dependent DNA helicase RecG [Escherichia coli UTI89]
 gi|218560724|ref|YP_002393637.1| ATP-dependent DNA helicase RecG [Escherichia coli S88]
 gi|218367493|emb|CAR05275.1| ATP-dependent DNA helicase [Escherichia coli S88]
 gi|294491775|gb|ADE90531.1| ATP-dependent DNA helicase RecG [Escherichia coli IHE3034]
 gi|307628725|gb|ADN73029.1| ATP-dependent DNA helicase RecG [Escherichia coli UM146]
 gi|315285420|gb|EFU44865.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 110-3]
 gi|323949891|gb|EGB45775.1| ATP-dependent DNA helicase RecG [Escherichia coli H252]
 gi|323954945|gb|EGB50724.1| ATP-dependent DNA helicase RecG [Escherichia coli H263]
          Length = 693

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   AV  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|227113295|ref|ZP_03826951.1| ATP-dependent DNA helicase RecG [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 693

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 250/686 (36%), Positives = 382/686 (55%), Gaps = 26/686 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   LN    PLST  GVG   +  L+++            DLL + P  + DR +   
Sbjct: 1   MKGRLLN--TQPLSTLTGVGASQAAKLARL------GLETVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      T+ G I + +      RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGDLLPGMYATVEGEILR-NDITFGSRRMLTCQISDGSGMLTMRFFNFSAAM-KNSLAPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++T  G+IK+ K    ++HP Y       Q      +  VY    G+     +K+  +A
Sbjct: 111 QRVTAYGEIKRGKIGAEIIHPEYRVQGDSTQVELQESLTPVYPSTEGVRQATLRKLTDQA 170

Query: 179 LSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA----KDFEWTSPARERLAYDE 232
           L+ L    + E + + L   +S  S+ +A   +H P       +      PA++RL  +E
Sbjct: 171 LALLDANHIDELLPESL--SRSLISLPDALRTLHRPPPDMQLSELEHGKHPAQQRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P+  +  + Q++L  +PF PT++QE  + +I  DM++  
Sbjct: 229 LLAHNLSMLAVRAGEQRHKASPLQAQDGLKQQLLAALPFKPTQAQERVVAEIEADMAKDF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIANGKQVALMAPTELLAEQHAHNFRQWFEPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   + IA GQ  +++GTHA+FQ  +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQDAIASGQVSMVVGTHAIFQQQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K        H L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R 
Sbjct: 409 ALWEKGEEQGFYAHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDSRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++IER+      EG++AYW+C  IEE      ++       L     +  + ++HGRM 
Sbjct: 469 SDIIERVNNACQQEGRQAYWVCTLIEESDLLEAQAAEATSEELKAALPNLKVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 AQEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  P+SK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPMSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A       L+   ++ A+H+    P+
Sbjct: 649 ADLLRDQELIPQVQRVARHLHEHYPE 674


>gi|212633208|ref|YP_002309733.1| ATP-dependent DNA helicase RecG [Shewanella piezotolerans WP3]
 gi|212554692|gb|ACJ27146.1| ATP-dependent DNA helicase RecG [Shewanella piezotolerans WP3]
          Length = 696

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 254/696 (36%), Positives = 386/696 (55%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV KK +  L+K+        T   DLLF+ P  + DR     I+ +      T
Sbjct: 13  PITELKGVAKKMAERLAKL------GITTVQDLLFHLPLRYEDRTQIYPIASLYPGSYGT 66

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           +   I      Q  ++R     + D TG +TL FF       +N    G  I   G+I++
Sbjct: 67  VEAVIQSSQVLQ-GRKRMLTCTVRDDTGSLTLRFFNFSVAQ-RNGLQTGSVIRAYGEIRR 124

Query: 132 LKNRIIMVHPHYIFH--NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
            K+   ++HP Y     +        +  VY    GL    + K+  +AL  L    LPE
Sbjct: 125 GKHFNEIIHPEYKLVSIDDPAPLSDTLTPVYPTTEGLKQASWIKLTEQALMMLANGGLPE 184

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +  +L        + +A  ++H P            T PA++RL  +ELLA  +++L +
Sbjct: 185 LLPSNLQPNH--MELKQALQLLHRPNNQVSLFDLENGTHPAQQRLIQEELLAHNLSMLRL 242

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++ +++  + ++  G++    L ++PF PT +Q+  + DI +D+ +   M+R++QGDVG
Sbjct: 243 RQRTRRDAAVSMSATGQLLNPFLASLPFKPTGAQQRVVSDITRDLEKAEPMMRLVQGDVG 302

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E+G Q  +MAP  +LA+QH    + + +   I V  + G +    
Sbjct: 303 SGKTLVAALAALQAIESGYQVAMMAPTELLAEQHAINFRSWFEPLGIKVGWLAGKLKGKA 362

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R ++L  I  G A+I+IGTHA+FQ  + + KL L+I+DEQHRFGV QRL L +    +  
Sbjct: 363 RTQSLADIESGDANIVIGTHAIFQQQVVFNKLALIIIDEQHRFGVHQRLGLREKGVSQGF 422

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV +   R +EVI+R++   
Sbjct: 423 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAVSDQRREEVIDRVRQAA 482

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++ ++AYW+C  IEE +    ++  +    L        + ++HGRM   +K+ +M SF
Sbjct: 483 VNDNRQAYWVCTLIEESEALECQAAEDTAEELKLALPELKVGLVHGRMKPAEKQQIMASF 542

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 543 KAGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIASHCVLMYK 602

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS  +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+    IA      +L+ 
Sbjct: 603 PPLSATATKRLGVLRQSNDGFIIAQRDLEIRGPGEVLGTKQTGVADMKIADLMRDQALIP 662

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H++ Q PD  SV     R L    Q+ +A
Sbjct: 663 HVQKLAPHVMQQAPD--SVDAIIQRWLGDREQFVQA 696


>gi|294638300|ref|ZP_06716553.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda ATCC 23685]
 gi|291088553|gb|EFE21114.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda ATCC 23685]
          Length = 693

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 255/707 (36%), Positives = 396/707 (56%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL++  GVG   +  L+K+            DLL + P  + DR    +
Sbjct: 1   MQGRLLDAV--PLTSLSGVGASQAGKLAKL------GLVTIQDLLLHLPLRYEDRTRLYR 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+   ++VTI G + + +     +RR     ++DG+G +TL FF     M KN    G
Sbjct: 53  IGELQPGQVVTIEGEVLR-TDVAFGRRRMLTSQISDGSGLLTLRFFNFSAAM-KNSLAPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++   G+IK+  +   ++HP Y     ++       +  VY    G+     +K+  +A
Sbjct: 111 KRVLAYGEIKRGHHGGEIIHPEYRIQGDDAPIELQAALTPVYPTTEGVRQATLRKLSDQA 170

Query: 179 LSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDE 232
           L+ L +  +PE + + L Q     S+ EA + +H P      E       PA+ RL  +E
Sbjct: 171 LALLDITPIPELLPESLGQ--GLISLPEALHTLHRPPADIRLEDLAQGRHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +++  + +     + Q++L  +PF+PT +Q   + DI  DM++  
Sbjct: 229 LLAHHLSMLAVRAGNQRQHALALGANDNLKQRLLAALPFTPTAAQWRVLADIETDMAKSV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVG GKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V
Sbjct: 289 PMMRLVQGDVGCGKTLVAAMAALRAIANGHQVALMAPTELLAEQHAANFRHWFEPLGLRV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+  +  IA G+  +++GTHALFQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQTQMAAIAAGEVDMVVGTHALFQEQVQFADLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I   R 
Sbjct: 409 ALWEKGQAQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIADTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           ++++ER++   L+E ++AYW+C  IEE +    ++      +L +      IA++HGRM 
Sbjct: 469 EQILERVRHACLTEKRQAYWVCTLIEESEVLEAQAAEATAEALSQQLPELRIALVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DK+ VM  FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 AADKQQVMARFKAGEIDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLS+ +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKAPLSQTAQQRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAEFRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +L+   ++ A+H+ +  P     +    R L    +Y+ A
Sbjct: 649 ADLLRDQALIPEVQRIARHLHSAYP--QHAQALIERWLPAGDRYSNA 693


>gi|117625924|ref|YP_859247.1| ATP-dependent DNA helicase RecG [Escherichia coli APEC O1]
 gi|237703446|ref|ZP_04533927.1| ATP-dependent DNA helicase RecG [Escherichia sp. 3_2_53FAA]
 gi|91074744|gb|ABE09625.1| ATP-dependent DNA helicase RecG [Escherichia coli UTI89]
 gi|115515048|gb|ABJ03123.1| ATP-dependent DNA helicase RecG [Escherichia coli APEC O1]
 gi|226902710|gb|EEH88969.1| ATP-dependent DNA helicase RecG [Escherichia sp. 3_2_53FAA]
          Length = 704

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 12  MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 63

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 64  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 121

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 122 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 181

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 182 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 239

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 240 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 299

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   AV  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 300 PMMRLVQGDVGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 359

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 360 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 419

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 420 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 479

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 480 TDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 539

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 540 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 599

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 600 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 659

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 660 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 704


>gi|324111546|gb|EGC05527.1| ATP-dependent DNA helicase RecG [Escherichia fergusonii B253]
          Length = 693

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAAQSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLEIGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +++I+R++     EG++AYW+C  IEE +    ++    +  L       +I ++HGRM 
Sbjct: 469 NDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|194431101|ref|ZP_03063394.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae 1012]
 gi|194420556|gb|EDX36632.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae 1012]
 gi|332084523|gb|EGI89718.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae 155-74]
 gi|332084834|gb|EGI90017.1| ATP-dependent DNA helicase RecG [Shigella boydii 5216-82]
          Length = 693

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 384/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIEHDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIVHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|56415634|ref|YP_152709.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364561|ref|YP_002144198.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129891|gb|AAV79397.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197096038|emb|CAR61625.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 693

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 258/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G+ K+ K    M+HP Y              +  +Y    G+     +K+  +A
Sbjct: 111 LRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPIYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHAQPLSTNNILKDKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E+I+R++   + EG++AYW+C  IEE      ++    +  L       +I ++HGRM 
Sbjct: 469 HEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P    V+    R +    +Y+ A
Sbjct: 649 ADLLRDQAIIPEVQRIARHIHERYP--QQVQALIERWMPETERYSNA 693


>gi|325577828|ref|ZP_08148103.1| DNA helicase RecG [Haemophilus parainfluenzae ATCC 33392]
 gi|325160573|gb|EGC72699.1| DNA helicase RecG [Haemophilus parainfluenzae ATCC 33392]
          Length = 693

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/688 (37%), Positives = 395/688 (57%), Gaps = 26/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL+T  GVG   S  LS+I            DLLF+ P  + DR     
Sbjct: 1   MSKQLLDAV--PLTTLSGVGAAISDKLSRI------GIHNLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++  E+  TI G + Q       +R    + L+DGT +I L FF     M KN F  G
Sbjct: 53  IADLRPEQYATIEG-VVQTCEVAFGRRPILTVSLSDGTSKIMLRFFNFNAGM-KNSFQIG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G+IK+ +    + HP Y  I  N+  V    +  +YS   GL  +  +K+  +A
Sbjct: 111 TRVKAFGEIKRGRFMAEIHHPEYQIIRDNAPLVLEETLTPIYSTTEGLKQNSLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDE 232
           L+ L    L E +  +        S+ +A   +H P      +       PA++RL ++E
Sbjct: 171 LALLDKIQLTEILPNEFNPHPF--SLKDAIRFLHRPPPDISLDILEKGQHPAQQRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++ + +P++ +  + Q+ L ++PF PT +Q   + DI QD+++  
Sbjct: 229 LLAHNLAMQKVRLGTQQFLALPLHYQTDLKQRFLASLPFQPTNAQNRVVADIEQDLAKDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFRRWLEPFGIDV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKARQAELEKIKSGAVQMVVGTHALFQEEVEFADLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI TV+I   R 
Sbjct: 409 MLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEERR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
           DE++ R+K   ++E ++AYW+C  I+E +    ++    +  L +      I ++HGRM 
Sbjct: 469 DEIVARVKNACINEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLKIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ +M +FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PQEKQDIMAAFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +F +
Sbjct: 589 STASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
           A       ++   +  AK ++ + PD+ 
Sbjct: 649 ANLMRDRKMIPTVQHYAKALIVKYPDVA 676


>gi|292490888|ref|YP_003526327.1| ATP-dependent DNA helicase RecG [Nitrosococcus halophilus Nc4]
 gi|291579483|gb|ADE13940.1| ATP-dependent DNA helicase RecG [Nitrosococcus halophilus Nc4]
          Length = 712

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/697 (37%), Positives = 387/697 (55%), Gaps = 23/697 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P++  +GVG   +  L+++        ++  DLLF+ P  + DR     I  +   R
Sbjct: 25  LSTPVTALKGVGPNLARRLARL------GLSKVQDLLFHLPQRYQDRTQLVPIGALQIGR 78

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              I G I Q S  +  +RR     ++DGTGEI L FF+  T   +N      ++   G+
Sbjct: 79  EALIEGEI-QLSEIRQGRRRSLVCAVSDGTGEIFLRFFHFST-WQQNSLTPAIRLRCFGE 136

Query: 129 IKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PV 184
           +++   R+ MVHP Y  +     +     +  +Y    GL   L + +I   L  L    
Sbjct: 137 VRQGAGRLEMVHPEYRRLLGEEAEAIEVHLTPIYPTTEGLRQPLLRDLIQGVLKDLGEEG 196

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240
           + + +    L+    P++++A   +H P          E   P ++RLA++ELLA  ++L
Sbjct: 197 IIDHLPPTFLEGIGLPTLSQAIVYLHQPPPDAPLDVLAEGKHPVQQRLAFEELLAHHLSL 256

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R +  +     +  EG++ ++ L  + F  T +QE  +++IL+DM++ + M R+LQG
Sbjct: 257 RQLRLRATQLQAPSLASEGQLQKRFLAALSFPLTAAQERVVQEILEDMARDSPMQRLLQG 316

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A+  AVEAG QA +MAP  +LA+QH   ++++    +I VE +     
Sbjct: 317 DVGSGKTVVAALAILQAVEAGHQAALMAPTELLAEQHLRVLQRWFSPFEINVEWLAAKGA 376

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT- 419
              RR++L R+  G+A + +GTHALFQ+ + ++ L LV+VDEQHRFGV+QRL L +K   
Sbjct: 377 AKGRRESLNRLKSGEAQVAVGTHALFQEGVNFHHLGLVVVDEQHRFGVEQRLALREKGRH 436

Query: 420 ---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D+D S I + P GR P+ T  +   R  EV+ +++
Sbjct: 437 GAYCPHQLIMTATPIPRTLAMTAYADLDTSVIDQLPPGRIPVATAAVSHRRRTEVVVKVR 496

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
                G++AYW+C  IEE      ++  +    L E      I +IHGRM   DKES M 
Sbjct: 497 RACQAGRQAYWVCTLIEESDSLQAQAAEKTAAELAEVLPELRIGLIHGRMKPPDKESTMA 556

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK+G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+LL
Sbjct: 557 AFKSGAIHLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGAADSYCVLL 616

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YH PLS+ S  RL+ L+ T DGF IA  DL+ R  GE+LG +Q+G+P++ +A       L
Sbjct: 617 YHGPLSELSRARLACLRATNDGFEIARRDLELRGPGEVLGTRQTGLPQYRVADLLRDQDL 676

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           L    + A     Q P          R L     Y E
Sbjct: 677 LARVGRVADRFQRQYP--AQAEALIRRWLGEESHYGE 711


>gi|325499458|gb|EGC97317.1| ATP-dependent DNA helicase RecG [Escherichia fergusonii ECD227]
          Length = 693

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAAQSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLEIGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +++I+R++     EG++AYW+C  IEE +    ++    +  L       +I ++HGRM 
Sbjct: 469 NDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|167037717|ref|YP_001665295.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116132|ref|YP_004186291.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856551|gb|ABY94959.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929223|gb|ADV79908.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 681

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 255/691 (36%), Positives = 391/691 (56%), Gaps = 18/691 (2%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL   +   +GVG K +  L K+            DLLFY P  + +R    KI ++   
Sbjct: 2   PLNLDIQYVKGVGPKRAKLLKKL------GINTVEDLLFYFPKDYENRSDILKIEDLKVG 55

Query: 68  RIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              T  GYI+      +  K    K+ + DGTG + L+++ +    +KN F  G +  + 
Sbjct: 56  EKQTFRGYIAGSPREIKTSKVIITKVPVKDGTGAVELVWYNQ--PYIKNNFKIGEEYIIN 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVL 185
           GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL   +  +
Sbjct: 114 GKLQFKYGQLIVENPVLEKSEDFKLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEV 173

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+AL LM++
Sbjct: 174 EEFFDEEFLSEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMALFLMKR 230

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             K++ GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++QGDVGSG
Sbjct: 231 SVKEKKGIKF--EQADLKPFLMGLPFKLTLAQIKVLKEIIADMNSHKVMNRLVQGDVGSG 288

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  ++++
Sbjct: 289 KTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKK 348

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE+I +G   I++GTHAL +D++ +  L L I DEQHRFGV+QR  LTQK   P VL+
Sbjct: 349 EVLEKIKNGDYDIVVGTHALIEDNVIFNNLGLCITDEQHRFGVRQRALLTQKGENPDVLV 408

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRT  L   GD+DIS I + P GRK +KT +I  +  ++  E     + +G++ 
Sbjct: 409 MTATPIPRTFALILYGDLDISIIDQLPPGRKKVKTYVISSSVREKAYEFAMKEVKKGRQV 468

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F NG   
Sbjct: 469 YVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMADSDKEKVMEEFVNGKID 528

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++I+ENAE FGLAQLHQLRGRVGR E  S CIL+ +   S  
Sbjct: 529 ILVSTTVIEVGVNVPNATVMIVENAERFGLAQLHQLRGRVGRSEFQSYCILISYSN-SDI 587

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL VL  T DGF IAE+DL+ R  GE LG++Q G+P+F IA       +L+  +KD 
Sbjct: 588 AKKRLGVLAQTSDGFKIAEKDLEIRGPGEFLGLRQHGLPEFKIANIFEDIDVLKRVQKDV 647

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           + +L +DP L +       +L   YQ  E  
Sbjct: 648 EELLEKDPKLENYPKLRSILLNQFYQKLEGI 678


>gi|307257926|ref|ZP_07539680.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306863573|gb|EFM95502.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 693

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 269/696 (38%), Positives = 386/696 (55%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I            DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTALSGVGAAIAEKLSRI------GINNVQDLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            +    + HP Y  I +N        +  +YS   GL  +  +K+  +AL+ L  +   E
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALALLDKIKVGE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
            +  +    K   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  +
Sbjct: 182 LLPDEYNPHK--YSLKEALQLLHRPPPDISAEQLEKGEHPAQKRLIFEELLAHNLAMQQV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R    +    P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDVG
Sbjct: 240 RVGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   LE I +G+  +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDGI 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+    
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAAC 479

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+ +M  F
Sbjct: 480 KNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 540 KAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++ 
Sbjct: 600 PPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           + +  AK I+ Q+P L        R L    +Y+ A
Sbjct: 660 LVQNYAKQIIQQNPPLA--EALIHRWLGERTEYSNA 693


>gi|254507298|ref|ZP_05119434.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus 16]
 gi|219549758|gb|EED26747.1| ATP-dependent DNA helicase RecG [Vibrio parahaemolyticus 16]
          Length = 692

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/675 (38%), Positives = 392/675 (58%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 9   PLTSLTGVGAKVAEKLAKV------GLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + L+DG G ITL FF   T  +KN F EG+ +   G++K+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKLSDGNGTITLRFFNF-TAAMKNNFAEGKTVHAYGEVKR 120

Query: 132 LKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F   N +      +  VY    GL     + +  +AL+ L    + E
Sbjct: 121 GGFGLEIVHPDYKFYAPNQKTDVEETLTPVYPTTEGLRQITLRNLTEQALALLDKSTVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L   +   ++ +A + IH P    D     E  +PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPAGLYDHQ--ITLGQALHTIHRPPPNMDLDQFDEGKNPAQIRLIMEELLAQNLSMLSV 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R +  ++  +P+    ++ Q++L  +PF+PT +Q   + +I QD+++ + M+R++QGDVG
Sbjct: 239 RSKGLQDAALPLGESHQLKQQLLNQLPFTPTNAQARVVGEIEQDLAKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRALEHGYQVALMAPTELLAEQHAINFANWFEPMGIKVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           +   L RIA G+A +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +    + T
Sbjct: 359 KEAELARIASGEAQMVVGTHALFQEHVAFDHLALVIIDEQHRFGVHQRLELREKGEKQGT 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++   
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQDF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 539 KDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL+VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 SPLSKTAQKRLAVLRESNDGFVIAQRDLEIRGPGELLGTKQTGIADFKIADLVRDQRLIP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI    PD
Sbjct: 659 EVQRIARHIHDHYPD 673


>gi|307246757|ref|ZP_07528825.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255741|ref|ZP_07537544.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307260193|ref|ZP_07541902.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306852332|gb|EFM84569.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306861301|gb|EFM93292.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865738|gb|EFM97617.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 693

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 269/696 (38%), Positives = 386/696 (55%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I            DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTALSGVGAAIAEKLSRI------GINNVQDLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            +    + HP Y  I +N        +  +YS   GL  +  +K+  +AL+ L  +   E
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALALLDKIKVGE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
            +  +    K   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  +
Sbjct: 182 LLPDEYNPHK--YSLKEALQLLHRPPPDISAEQLEKGEHPAQKRLIFEELLAHNLAMQQV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R    +    P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDVG
Sbjct: 240 RVGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   LE I +G+  +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDGI 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+    
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAAC 479

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+ +M  F
Sbjct: 480 KNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 540 KAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++ 
Sbjct: 600 PPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           + +  AK I+ Q+P L        R L    +Y+ A
Sbjct: 660 LVQNYAKQIIQQNPPLA--EALIRRWLGERTEYSNA 693


>gi|218697373|ref|YP_002405040.1| ATP-dependent DNA helicase RecG [Escherichia coli 55989]
 gi|218354105|emb|CAV00667.1| ATP-dependent DNA helicase [Escherichia coli 55989]
          Length = 693

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIKV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|82779143|ref|YP_405492.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae Sd197]
 gi|81243291|gb|ABB64001.1| DNA helicase [Shigella dysenteriae Sd197]
          Length = 693

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H PR      D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPRPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIECDMALNV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|332282577|ref|ZP_08394990.1| ATP-dependent DNA helicase recG [Shigella sp. D9]
 gi|332104929|gb|EGJ08275.1| ATP-dependent DNA helicase recG [Shigella sp. D9]
          Length = 704

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 388/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 12  MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 63

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 64  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 121

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 122 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 181

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 182 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 239

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 240 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 299

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V
Sbjct: 300 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEV 359

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 360 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 419

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 420 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 479

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 480 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 539

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 540 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 599

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 600 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 659

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 660 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 704


>gi|331659988|ref|ZP_08360926.1| ATP-dependent DNA helicase RecG [Escherichia coli TA206]
 gi|331053203|gb|EGI25236.1| ATP-dependent DNA helicase RecG [Escherichia coli TA206]
          Length = 693

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|191167788|ref|ZP_03029594.1| ATP-dependent DNA helicase RecG [Escherichia coli B7A]
 gi|300907695|ref|ZP_07125323.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 84-1]
 gi|301303887|ref|ZP_07210006.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 124-1]
 gi|190902131|gb|EDV61874.1| ATP-dependent DNA helicase RecG [Escherichia coli B7A]
 gi|300400631|gb|EFJ84169.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 84-1]
 gi|300840850|gb|EFK68610.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 124-1]
 gi|315254040|gb|EFU34008.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 85-1]
          Length = 693

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIEHDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|315296995|gb|EFU56275.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 16-3]
          Length = 693

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQEKALIERWMPETERYSNA 693


>gi|119947094|ref|YP_944774.1| ATP-dependent DNA helicase RecG [Psychromonas ingrahamii 37]
 gi|119865698|gb|ABM05175.1| ATP-dependent DNA helicase RecG [Psychromonas ingrahamii 37]
          Length = 690

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 275/696 (39%), Positives = 398/696 (57%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+  +GVG K S  L+KI            DLLF+ P  + DR     I+++ +   V+
Sbjct: 7   PLTALKGVGIKASQRLAKI------GLHSVADLLFHLPLHYQDRTRIYAIADLKDSMQVS 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +      Q  KRR  K  ++DG+G +TL FF+  T   +N F +G  I   G+ ++
Sbjct: 61  VQGKVLSC-DLQSGKRRILKCKISDGSGSVTLNFFHFNTAQ-QNSFVKGALIKCFGEFRR 118

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             +   + HP Y   N+   +     +  +Y    GL  +  + +  +AL  L    + E
Sbjct: 119 GYHGFEVTHPDYRLLNAMQQSHVEETLTPIYPSTEGLKQNSLRSLTEQALLHLEQHQIDE 178

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIALLLM 243
            +   LL      S+++A   IH P      E     T PA++RL  +EL A QI++L +
Sbjct: 179 LLPTHLLA--HPISLSDALFYIHRPPPDASIEQLENKTHPAQQRLIIEELSAQQISMLSL 236

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   ++   I +   G +  ++L+++PFS T +Q     +I QD+ Q   M+R++QGDVG
Sbjct: 237 RVNAQQHQAIAVKESGLLQDRLLQSLPFSLTNAQHRVNWEIQQDLKQTIPMMRLVQGDVG 296

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA IA  + +EAG Q  +MAP  +LA+QH    +K+     + V +++G M    
Sbjct: 297 SGKTLVAAIAALSVIEAGYQVALMAPTELLAEQHLLNFQKWFAALDVSVGMLSGKMRVKE 356

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           +R  LE I+ G + +++GTHALFQ+S+Q+  L L+IVDEQHRFGV QRL L +K  +   
Sbjct: 357 KRSQLENISLGLSKMVVGTHALFQESVQFNNLALIIVDEQHRFGVHQRLALREKGRSGDF 416

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L MTATPIPRTL +T+  D+++S I E P GR  IKTV +   R DEVI+R+    
Sbjct: 417 APHQLTMTATPIPRTLAMTAYADLNVSVIDELPPGRTAIKTVALVDKRRDEVIQRVYQAC 476

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++AYW+C  IEE +    ++     N +        I ++HGRM   +K+SVMD+F
Sbjct: 477 KNEGRQAYWVCTLIEESEVLECQTAENTANEMQLALPDLRIGLVHGRMKANEKQSVMDAF 536

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRGE  S C+LLY 
Sbjct: 537 KEGQLDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGEVASHCVLLYK 596

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF IAE+DL  R  GE+LG +Q+G+ +F IA      SLL 
Sbjct: 597 NPLSKTAQRRLQVLRESNDGFYIAEQDLAIRGPGEVLGTRQTGVAEFKIADLLRDQSLLP 656

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            A++ A  ++   P+L     Q  R L    +Y  A
Sbjct: 657 QAQQLAFQLMHSFPELIPELIQ--RWLGDKDRYVHA 690


>gi|332159668|ref|YP_004296245.1| ATP-dependent DNA helicase RecG [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325663898|gb|ADZ40542.1| ATP-dependent DNA helicase RecG [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860933|emb|CBX71211.1| ATP-dependent DNA helicase recG [Yersinia enterocolitica W22703]
          Length = 693

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 261/707 (36%), Positives = 394/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS   GVG   +  L+K+            DLL + P  + DR    +
Sbjct: 1   MKGRLLDAV--PLSKLSGVGASQAGKLAKM------GLETIQDLLLHLPLRYEDRTRLYR 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++     VT+ G + + S     +RR     ++DG+G +TL FF     M KN    G
Sbjct: 53  IGDLLPGLSVTVEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + +   G+ K+      ++HP Y  H           +  VY    G+   + +K+I +A
Sbjct: 111 KHVIAYGEAKRGNTGPEIIHPEYRVHGENIGVELQESLTPVYPTTEGIRQAILRKLIDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L+ L   V+ E +  +L   +S  S+ EA + +H P       D E    PA+ RL  +E
Sbjct: 171 LAMLDSSVITELLPIEL--SRSLISLPEAIHTLHRPPADIQLADLEQGKHPAQRRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +    +P+  E ++ ++ L  +PF+PT +Q+  + +I QDM+   
Sbjct: 229 LLAHNLSMLAVRAGAQSYRALPLLPEEQLKRRFLAALPFTPTHAQQRVVAEIEQDMTHNF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V
Sbjct: 289 PMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLEPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E +A GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAVASGQVSMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            +VI+R+K   L EG++AYW+C  IEE +    ++       L        + ++HGRM 
Sbjct: 469 SDVIQRVKNACLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 529 GPEKQAVMLAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+H+  Q P+    R    R L    +Y  A
Sbjct: 649 ADLLRDQAMIPKVQRVARHLHQQYPE--HARALIERWLPERTRYTNA 693


>gi|193070345|ref|ZP_03051287.1| ATP-dependent DNA helicase RecG [Escherichia coli E110019]
 gi|192956284|gb|EDV86745.1| ATP-dependent DNA helicase RecG [Escherichia coli E110019]
          Length = 693

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLQTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|161505719|ref|YP_001572831.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867066|gb|ABX23689.1| hypothetical protein SARI_03895 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 693

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 256/691 (37%), Positives = 381/691 (55%), Gaps = 30/691 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIV 176
           R++   G+ K+ K    M+HP Y      D++ P ++     VY    G+     +K+  
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRLQ--GDLSTPALQETLTPVYPTTEGVKQATLRKLTD 168

Query: 177 EALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAY 230
           +AL  L    + E +  +L Q     S+ EA   +H P       D E    PA+ RL  
Sbjct: 169 QALELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGQHPAQRRLIL 226

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           +ELLA  +++L +R   ++    P++    +  ++L ++PF+PT +Q   + +I +DM+ 
Sbjct: 227 EELLAHNLSMLALRAGAQRYHAQPLSTNDTLKHQLLASLPFNPTGAQARVVAEIERDMAL 286

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I
Sbjct: 287 DVPMMRLVQGDVGSGKTLVAALAALRAIVHGKQVALMAPTELLAEQHANNFRNWFAPLGI 346

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V  + G      R    E IA GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV Q
Sbjct: 347 EVGWLAGKQKGKARVTQQEAIASGQVQMVVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQ 406

Query: 411 RLKLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           RL L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  
Sbjct: 407 RLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDT 466

Query: 467 RIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524
           R  E+I R++   + E ++AYW+C  IEE      ++    +  L       +I ++HGR
Sbjct: 467 RRPEIINRVRNACTTEDRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGR 526

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   +K++VM  FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVG
Sbjct: 527 MKPAEKQAVMQRFKQGEMHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVG 586

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RG   S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F
Sbjct: 587 RGAVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEF 646

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            +A      +++   ++ A+HI  + P   +
Sbjct: 647 KVADLLRDQAIIPEVQRIARHIHERYPQQAA 677


>gi|77919208|ref|YP_357023.1| ATP-dependent DNA helicase RecG [Pelobacter carbinolicus DSM 2380]
 gi|77545291|gb|ABA88853.1| ATP-dependent DNA helicase RecG [Pelobacter carbinolicus DSM 2380]
          Length = 717

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 235/711 (33%), Positives = 383/711 (53%), Gaps = 26/711 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL T RGVG +     +K+              L+  P  + DR     I+++  + 
Sbjct: 14  LGTPLDTIRGVGPRLVEKFAKM------GVFTVEHALYTLPFRYEDRRRLTPIAQLKPDC 67

Query: 69  IVTITGYI--SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
                G +  +   +    +R+ +++++ D +G I+L +F+ +   ++  +  GR+    
Sbjct: 68  KEIFVGEVLAASEKTTSRSRRKLFEVIVGDSSGSISLKWFHYRKTWIQKQYPLGRRGIFY 127

Query: 127 GKIKKLKNRIIMVHPHYIFH----------NSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
           G++K+      + HP   F            S  ++F  I  VY L  GL+    +KI  
Sbjct: 128 GEVKRFGAIREIHHPDVDFLREGQDPQSLLESDPLSFGRILPVYPLTEGLTQKTIRKIWK 187

Query: 177 EALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYD 231
           + + R    +   +  ++ ++++   +++A   +H P          E  SPAR  L +D
Sbjct: 188 QIVDRYAEYVVAPLPDEIRKRQNLMPLSDALRRVHFPSSDSSLKELEEGMSPARRTLVFD 247

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           EL   ++ + L R+    E G    ++    + +   +PF  T++Q   + +I +DM   
Sbjct: 248 ELFYLELGMALKRRGVLLEEGHAFKLDHIYTKPLAGMLPFRLTEAQRRVLGEIKRDMMSP 307

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
           + M R+LQGDVGSGKT+VAL+A   A+E   Q  ++AP  ILA+QH+   + + +   + 
Sbjct: 308 HPMNRLLQGDVGSGKTVVALMAALVAIENRTQVAVVAPTEILAEQHFFQFQGWMKALGLG 367

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V  +TG+ P A RR+ L+++ +    +++GTHA+ QD +++  L L I+DEQHRFGV QR
Sbjct: 368 VVFLTGSTPTAQRREILQQLKNSTVDMVVGTHAVLQDDVEFAALGLGIIDEQHRFGVLQR 427

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             L +K   P +L+MTATPIPRTL LT  GD+ +S I + P GR+P+ T +I   +  + 
Sbjct: 428 ACLRKKGKHPDLLVMTATPIPRTLALTVYGDLALSVIDQMPPGRQPVNTKVIVDQQRRQA 487

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDID 529
            + ++  L EG++AY + P +EE ++S+  +  E    L E       I ++HG+M   D
Sbjct: 488 YQTIRNELVEGRQAYIVYPLVEETEKSDLMAATEGAEFLQEKVFPDKRIGVLHGKMRPAD 547

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE++M  FK G   +L++TTVIEVGIDV +A++++IE+AE FGLAQLHQLRGRVGRG+  
Sbjct: 548 KEAIMRCFKAGELDILVSTTVIEVGIDVPNATVMMIEHAERFGLAQLHQLRGRVGRGQHQ 607

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+     S++   RL V++ T DGF IAE DL+ R  GE LG +QSG+P F +A  
Sbjct: 608 SYCLLIRSHRCSEDGLRRLDVMEATTDGFKIAEADLEIRGPGEFLGTRQSGLPDFRVANL 667

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
                +LE AR++A  I      LTS     +R  L   ++ +  +    G
Sbjct: 668 IRDGRILEQARQEAFSIANDPGFLTSDHYAELRQALK-DRWGDRLELASLG 717


>gi|332997751|gb|EGK17362.1| ATP-dependent DNA helicase RecG [Shigella flexneri K-272]
 gi|333013286|gb|EGK32658.1| ATP-dependent DNA helicase RecG [Shigella flexneri K-227]
          Length = 693

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLPTG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTLELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVTIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAKATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|86146551|ref|ZP_01064873.1| ATP-dependent DNA helicase RecG [Vibrio sp. MED222]
 gi|85835608|gb|EAQ53744.1| ATP-dependent DNA helicase RecG [Vibrio sp. MED222]
          Length = 692

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 266/696 (38%), Positives = 390/696 (56%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLNSLSGVGAKVAEKLEKV------GLNNVQDLLFHLPLRYEDRTRIYPIVKLHAGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF     M KN F EG+++   G+IK+
Sbjct: 63  VQGKVMHVDTI-FGKRKMLAVKISDGNGTITLRFFNFTAGM-KNNFAEGKQVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F     Q      +  VY    GL     + +  +AL  +    + E
Sbjct: 121 GNMGLEIVHPDYKFFAPRQQPDVEANLTPVYPTTEGLRQVTLRNLTDQALELIDKAAVNE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            +   L   +   ++A+A + IH P    D E       PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDHQ--ITLAQALHTIHRPPPGIDLELFDEGKHPAQLRLIMEELLAQNLSMLSV 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + +++  +P      +  K+L  +PFSPT +Q    K+I  D+ + + M+R++QGDVG
Sbjct: 239 RSKGQQDKAMPFPPVNTLKDKLLAQLPFSPTNAQARVTKEIEADLEKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRALEHGQQVALMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   L RIA G+A +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL+L +K      
Sbjct: 359 RETELTRIASGEAQMVVGTHALFQEHVEFNNLGLVIIDEQHRFGVHQRLELREKGAKQGY 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER+K   
Sbjct: 419 YPHQLVMTATPIPRTLAMTAYADLETSIIDELPPGRTPIQTVAIPDTKRDDIVERVKNAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQEF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 539 KENKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 SPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQRLIP 658

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             ++ A+HI    PD  + +    R L     Y++A
Sbjct: 659 EVQRIARHIHDSYPD--NAKAIINRWLGERDVYSKA 692


>gi|261823689|ref|YP_003261795.1| ATP-dependent DNA helicase RecG [Pectobacterium wasabiae WPP163]
 gi|261607702|gb|ACX90188.1| ATP-dependent DNA helicase RecG [Pectobacterium wasabiae WPP163]
          Length = 693

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 250/686 (36%), Positives = 384/686 (55%), Gaps = 26/686 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   LN    PLST  GVG   +  L+++            DLL + P  + DR +   
Sbjct: 1   MKGRLLN--TQPLSTLAGVGASQAAKLARL------GLETVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      T+ G I + +      RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGDLLPGMYATVEGEILR-NDITFGSRRMLTCQISDGSGMLTMRFFNFSAAM-KNSLAPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++T  G+IK+ K    ++HP Y       Q      +  VY    G+     +K+  +A
Sbjct: 111 QRVTAYGEIKRGKIGAEIIHPEYRVQGDSTQVELQESLTPVYPSTEGIRQATLRKLTDQA 170

Query: 179 LSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA----KDFEWTSPARERLAYDE 232
           L  L    + E + + L   +S  S+ +A   +H P       +      PA++RL  +E
Sbjct: 171 LDLLAANHIDELLPESL--SRSLISLPDALRTLHRPPPDMQLTELEHGKHPAQQRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P+  +  + Q++L  +PF+PT++Q+  + +I  DM++  
Sbjct: 229 LLAHNLSMLAVRAGEQRHKASPLPTKDSLKQQLLAALPFTPTQAQDRVVAEIETDMAKDF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+ +G Q  +MAP  +LA+QH    +++ +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIASGKQVALMAPTELLAEQHAHNFRQWFEPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   + IA+GQ  +++GTHA+FQ  +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQDAIANGQVSMVVGTHAIFQQQVKFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDSRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++IER+      EG++AYW+C  IEE      ++       L     +  + ++HGRM 
Sbjct: 469 SDIIERVNSACQQEGRQAYWVCTLIEESDLLEAQAAEATSEELKAALPNLKVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 AQEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  P+SK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPMSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A       L+    + A+H+    PD
Sbjct: 649 ADLLRDRDLIPQVHRVARHLHEHYPD 674


>gi|161486064|ref|NP_756339.2| ATP-dependent DNA helicase RecG [Escherichia coli CFT073]
 gi|227883842|ref|ZP_04001647.1| ATP-dependent DNA helicase RecG [Escherichia coli 83972]
 gi|300984895|ref|ZP_07177183.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 45-1]
 gi|301047442|ref|ZP_07194521.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 185-1]
 gi|227839120|gb|EEJ49586.1| ATP-dependent DNA helicase RecG [Escherichia coli 83972]
 gi|300300650|gb|EFJ57035.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 185-1]
 gi|300408324|gb|EFJ91862.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 45-1]
 gi|307555770|gb|ADN48545.1| ATP-dependent DNA helicase RecG [Escherichia coli ABU 83972]
 gi|315292921|gb|EFU52273.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 153-1]
          Length = 693

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DK++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PADKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|331679744|ref|ZP_08380414.1| ATP-dependent DNA helicase RecG [Escherichia coli H591]
 gi|331072916|gb|EGI44241.1| ATP-dependent DNA helicase RecG [Escherichia coli H591]
          Length = 704

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 388/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 12  MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 63

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 64  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 121

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 122 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 181

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 182 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 239

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 240 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDV 299

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 300 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 359

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 360 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 419

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 420 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 479

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 480 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 539

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            ++K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 540 PVEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 599

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 600 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 659

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 660 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 704


>gi|26110729|gb|AAN82913.1|AE016769_28 ATP-dependent DNA helicase recG [Escherichia coli CFT073]
          Length = 704

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 12  MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 63

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 64  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 121

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 122 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 181

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 182 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 239

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 240 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 299

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 300 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 359

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 360 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 419

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 420 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 479

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 480 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 539

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DK++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 540 PADKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 599

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 600 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 659

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 660 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 704


>gi|16131523|ref|NP_418109.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89110360|ref|AP_004140.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|170083159|ref|YP_001732479.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|194435934|ref|ZP_03068037.1| ATP-dependent DNA helicase RecG [Escherichia coli 101-1]
 gi|238902743|ref|YP_002928539.1| ATP-dependent DNA helicase [Escherichia coli BW2952]
 gi|253771506|ref|YP_003034337.1| ATP-dependent DNA helicase RecG [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163580|ref|YP_003046688.1| ATP-dependent DNA helicase RecG [Escherichia coli B str. REL606]
 gi|260857953|ref|YP_003231844.1| ATP-dependent DNA helicase RecG [Escherichia coli O26:H11 str.
           11368]
 gi|260870382|ref|YP_003236784.1| ATP-dependent DNA helicase RecG [Escherichia coli O111:H- str.
           11128]
 gi|297518057|ref|ZP_06936443.1| ATP-dependent DNA helicase RecG [Escherichia coli OP50]
 gi|300927917|ref|ZP_07143476.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 187-1]
 gi|312972062|ref|ZP_07786236.1| ATP-dependent DNA helicase RecG [Escherichia coli 1827-70]
 gi|132252|sp|P24230|RECG_ECOLI RecName: Full=ATP-dependent DNA helicase recG
 gi|42669|emb|CAA42123.1| recG [Escherichia coli K-12]
 gi|147545|gb|AAA24513.1| DNA recombinase [Escherichia coli]
 gi|2367254|gb|AAC76676.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85676391|dbj|BAE77641.1| ATP-dependent DNA helicase [Escherichia coli str. K12 substr.
           W3110]
 gi|169890994|gb|ACB04701.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|194425477|gb|EDX41461.1| ATP-dependent DNA helicase RecG [Escherichia coli 101-1]
 gi|238860041|gb|ACR62039.1| ATP-dependent DNA helicase [Escherichia coli BW2952]
 gi|242379176|emb|CAQ33978.1| RecG DNA helicase [Escherichia coli BL21(DE3)]
 gi|253322550|gb|ACT27152.1| ATP-dependent DNA helicase RecG [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975481|gb|ACT41152.1| ATP-dependent DNA helicase [Escherichia coli B str. REL606]
 gi|253979637|gb|ACT45307.1| ATP-dependent DNA helicase [Escherichia coli BL21(DE3)]
 gi|257756602|dbj|BAI28104.1| ATP-dependent DNA helicase RecG [Escherichia coli O26:H11 str.
           11368]
 gi|257766738|dbj|BAI38233.1| ATP-dependent DNA helicase RecG [Escherichia coli O111:H- str.
           11128]
 gi|300464009|gb|EFK27502.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 187-1]
 gi|310334439|gb|EFQ00644.1| ATP-dependent DNA helicase RecG [Escherichia coli 1827-70]
 gi|323155305|gb|EFZ41488.1| ATP-dependent DNA helicase RecG [Escherichia coli EPECa14]
 gi|323177657|gb|EFZ63241.1| ATP-dependent DNA helicase RecG [Escherichia coli 1180]
 gi|323934803|gb|EGB31185.1| ATP-dependent DNA helicase RecG [Escherichia coli E1520]
 gi|323959900|gb|EGB55548.1| ATP-dependent DNA helicase RecG [Escherichia coli H489]
 gi|323971294|gb|EGB66539.1| ATP-dependent DNA helicase RecG [Escherichia coli TA007]
 gi|332345641|gb|AEE58975.1| ATP-dependent DNA helicase RecG [Escherichia coli UMNK88]
          Length = 693

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R     ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVHHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|328887724|emb|CAJ69448.2| ATP-dependent DNA helicase RecG [Clostridium difficile]
          Length = 686

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 246/695 (35%), Positives = 393/695 (56%), Gaps = 19/695 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L+  +   +G+G K +  L+K+            DLL+Y P  F DR+   KI+++ +  
Sbjct: 4   LYKDVQYVKGIGPKKADKLNKL------GIFTLKDLLYYFPRQFEDRNNLKKIAQLEDGE 57

Query: 69  IVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            VTI   IS  ++F  ++     KI + D TG   L+FF +    +KN F  G  I V G
Sbjct: 58  KVTIKAVISSINTFSPKEGMTLTKIDVKDETGSAKLVFFNKS--YIKNTFRPGDSILVFG 115

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-P 186
           K+KK  N + +      +  +   N      VY L  G++      II   L    ++  
Sbjct: 116 KVKKKFNNLELTSCELEYLTNSPKNTCRFMPVYQLTYGVTNKEIMSIIRTVLEDKELIIQ 175

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E++ + +++K    SI  A   IH+P   +       A  R+ ++ELL  Q+ L + +  
Sbjct: 176 EYMPQRIIEKYRLCSIDFAVRNIHSPSSKESL---KIALYRIVFEELLILQLGLFVFKSG 232

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
             KE GI      K  +KI+  +PF  TK+Q  A+ +I+QDM+ +  M R++QGDVGSGK
Sbjct: 233 RNKEDGIKFET-SKDLKKIISALPFKLTKAQNRALDEIIQDMNLEKIMNRLVQGDVGSGK 291

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VAL+A+A  V  G Q  +MAP  ILA QHY  + +  ++  I V ++ G++ +  +  
Sbjct: 292 TVVALLALANCVLNGYQGALMAPTEILAGQHYISLTESLKDFGINVGLLIGSLTKKQKDT 351

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE+I + +  I+IGTHAL +D +++  + LVI DEQHRFGV QR KL+ K   P +L+M
Sbjct: 352 VLEQIKNNEIDILIGTHALIEDKVEFNNIGLVITDEQHRFGVMQRSKLSLKGANPDILVM 411

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKA 485
           TATPIPRTL L   GD+DIS I E P GR+PI+T+ I  ++ D      ++  +  G++ 
Sbjct: 412 TATPIPRTLALILYGDLDISIIDELPPGRQPIETIAIEKSKRDRAYNNLVRREVESGRQV 471

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP +EE +    +S VE    L   +     + ++HG+M   +K+ VM  FK+    
Sbjct: 472 YIVCPLVEESEAIEAKSAVELVEELRAEYFHDLRLGLLHGKMKSSEKDEVMRLFKDKEID 531

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++T VIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG   S C+L+Y    +  
Sbjct: 532 ILVSTIVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGSHKSYCVLIYDSK-TDV 590

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+++++ T DGF I+E+DL+ R  GE  G +Q G+P+  +A    H  +L++A+++A
Sbjct: 591 CRQRMAIMEETNDGFKISEKDLEIRGPGEFFGTRQHGLPELKVANLFKHIKILKLAQQEA 650

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
           ++IL +D +L      +++  + + ++ +  + I 
Sbjct: 651 RYILGEDNNLQLKENMALKKEI-IDKFKDTLKEIS 684


>gi|318603764|emb|CBY25262.1| ATP-dependent DNA helicase RecG [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 693

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 261/707 (36%), Positives = 393/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS   GVG   +  L+K+            DLL + P  + DR    +
Sbjct: 1   MKGRLLDAV--PLSKLSGVGASQAGKLAKM------GLETIQDLLLHLPLRYEDRTRLYR 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++     VT+ G + + S     +RR     ++DG+G +TL FF     M KN    G
Sbjct: 53  IGDLLPGLSVTVEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + +   G+ K+      ++HP Y  H           +  VY    G+   + +K+I +A
Sbjct: 111 KHVIAYGEAKRGNTGPEIIHPEYRVHGENIGVELQESLTPVYPTTEGIRQAILRKLIDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L+ L   V+ E +  +L   +S  S+ EA + +H P       D E    PA+ RL  +E
Sbjct: 171 LAMLDSSVITELLPIEL--SRSLISLPEAIHTLHRPPADIQLADLEQGKHPAQRRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +    +P+  E ++ ++ L  +PF+PT +Q+  + +I QDM+   
Sbjct: 229 LLAHNLSMLAVRAGAQSYRALPLLPEEQLKRRFLAALPFTPTHAQQRVVAEIEQDMTHNF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++     + V
Sbjct: 289 PMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLGPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E +A GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAVASGQVSMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            +VI+R+K   L EG++AYW+C  IEE +    ++       L        + ++HGRM 
Sbjct: 469 SDVIQRVKNACLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 529 GPEKQAVMLAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+H+  Q P+    R    R L    +Y  A
Sbjct: 649 ADLLRDQAMIPKVQRVARHLHQQYPE--HARALIERWLPERTRYTNA 693


>gi|256025617|ref|ZP_05439482.1| ATP-dependent DNA helicase RecG [Escherichia sp. 4_1_40B]
 gi|300950016|ref|ZP_07163966.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 116-1]
 gi|300955359|ref|ZP_07167738.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 175-1]
 gi|301028431|ref|ZP_07191677.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 196-1]
 gi|301644319|ref|ZP_07244321.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 146-1]
 gi|307140351|ref|ZP_07499707.1| ATP-dependent DNA helicase RecG [Escherichia coli H736]
 gi|299878542|gb|EFI86753.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 196-1]
 gi|300317731|gb|EFJ67515.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 175-1]
 gi|300450630|gb|EFK14250.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 116-1]
 gi|301077357|gb|EFK92163.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 146-1]
 gi|315618644|gb|EFU99230.1| ATP-dependent DNA helicase RecG [Escherichia coli 3431]
          Length = 693

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDTV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIKV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|306816000|ref|ZP_07450138.1| ATP-dependent DNA helicase RecG [Escherichia coli NC101]
 gi|222035360|emb|CAP78105.1| ATP-dependent DNA helicase recG [Escherichia coli LF82]
 gi|305850396|gb|EFM50853.1| ATP-dependent DNA helicase RecG [Escherichia coli NC101]
 gi|312948213|gb|ADR29040.1| ATP-dependent DNA helicase RecG [Escherichia coli O83:H1 str. NRG
           857C]
 gi|320193841|gb|EFW68474.1| ATP-dependent DNA helicase RecG [Escherichia coli WV_060327]
 gi|324008108|gb|EGB77327.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 57-2]
          Length = 693

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   AV  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 IDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMTSFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|190151182|ref|YP_001969707.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307264531|ref|ZP_07546115.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189916313|gb|ACE62565.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306870130|gb|EFN01890.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 693

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 270/697 (38%), Positives = 387/697 (55%), Gaps = 28/697 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I            DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTALSGVGVAIAEKLSRI------GINNVQDLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            +    + HP Y  I +N        +  +YS   GL  +  +K+  +AL+ L  +   E
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALALLDKIKVGE 181

Query: 188 WIEKDL-LQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLL 242
            +  +  L K    S+ EA  ++H P      E       PA++RL ++ELLA  +A+  
Sbjct: 182 LLPDEYNLHKY---SLKEALQLLHRPPPDISAEQLEKGEHPAQKRLIFEELLAHNLAMQQ 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R    +    P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDV
Sbjct: 239 VRVGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +   
Sbjct: 299 GSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419
            R   LE I +G+  +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDG 418

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+   
Sbjct: 419 IYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAA 478

Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
             +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+ +M  
Sbjct: 479 CKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAE 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++
Sbjct: 599 KPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMI 658

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            + +  AK I+ Q+P L        R L    +Y+ A
Sbjct: 659 PLVQNYAKQIIQQNPPLA--EALIRRWLGERTEYSNA 693


>gi|323497035|ref|ZP_08102058.1| ATP-dependent DNA helicase RecG [Vibrio sinaloensis DSM 21326]
 gi|323317879|gb|EGA70867.1| ATP-dependent DNA helicase RecG [Vibrio sinaloensis DSM 21326]
          Length = 692

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 265/696 (38%), Positives = 404/696 (58%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  G+G K +  L+K+            DLLF+ P  + DR     I+++       
Sbjct: 9   PLTSLTGIGAKVAEKLAKV------GLNSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + L+DG G ITL FF   T  +KN F EG+ +   G++K+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKLSDGNGTITLRFFNF-TAAMKNNFAEGKTVHAYGEVKR 120

Query: 132 LKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F   N +      +  VY    GL     + +  +AL+ L    + E
Sbjct: 121 GGYGLEIVHPDYKFYAPNQKADVEQTLTPVYPTTDGLRQITLRNLTDQALALLDKAAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L   +   ++A+A + IH P  + D     E  +PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDHQ--LTLAQALHTIHRPPPSLDVDEFDEGKNPAQIRLIMEELLAQNLSMLAV 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + +++  +P+    ++ Q++L  +PFSPTK+Q   +K+I  D+ + + M+R++QGDVG
Sbjct: 239 RSKGQQDTALPLKECHQLKQQLLGQLPFSPTKAQARVVKEIEDDLLKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRALEQGYQVALMAPTELLAEQHAINFANWFEPMDIKVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           +   L RIA G+A +++GTHALFQ+ ++++ L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 KDAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQHRFGVHQRLELREKGAKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D++IER++   
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIIERVRHAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAADTAEDLQRKLPEVKIGLVHGRMKPAEKQAVMQDF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+   +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 539 KDNKLQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL+VL+ + DGF+IA+ DL+ R  GE+LG KQ+GM  F IA       L+ 
Sbjct: 599 SPLSKTAQKRLAVLRESNDGFVIAQRDLEIRGPGELLGTKQTGMADFKIADLVRDQRLIP 658

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             ++ A++I    PD  +      R L     Y++A
Sbjct: 659 EVQRIARYIHDNYPD--NATAIIERWLGDRDVYSKA 692


>gi|255656538|ref|ZP_05401947.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-23m63]
 gi|296450011|ref|ZP_06891775.1| DNA helicase RecG [Clostridium difficile NAP08]
 gi|296878392|ref|ZP_06902400.1| DNA helicase RecG [Clostridium difficile NAP07]
 gi|296261281|gb|EFH08112.1| DNA helicase RecG [Clostridium difficile NAP08]
 gi|296430690|gb|EFH16529.1| DNA helicase RecG [Clostridium difficile NAP07]
          Length = 685

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 247/695 (35%), Positives = 392/695 (56%), Gaps = 19/695 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L+  +   +G+G K +  L+K+            DLL+Y P  F DR+   KI+++ +  
Sbjct: 3   LYKDVQYVKGIGPKKADKLNKL------GIFTLKDLLYYFPRQFEDRNNLKKIAQLEDSE 56

Query: 69  IVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            VTI   IS  ++F  ++     KI + D TG   L+FF +    +KN F  G  I V G
Sbjct: 57  KVTIKAVISSINTFSPKEGMTLTKIDVKDETGSAKLVFFNKS--YIKNTFRPGDSILVFG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-P 186
           K+KK  N + +      +  +   N      VY L  G++      II   L    ++  
Sbjct: 115 KVKKKFNNLELTSCELEYLTNSPKNTCRFMPVYQLTYGVTNKEIMSIIRTVLEDKDLIIQ 174

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E++ + ++ K    SI  A   IH+P   +       A  R+ ++ELL  Q+ L + +  
Sbjct: 175 EYMPQRIIDKYRLCSIDFAVRNIHSPNSKESL---KIALYRIVFEELLILQLGLFVFKSG 231

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
             KE GI      K  +KI+  +PF  TK+Q  A+ +I+QDM  +  M R++QGDVGSGK
Sbjct: 232 RNKEDGIKFET-SKDLKKIINALPFKLTKAQNRALGEIIQDMDSEKIMNRLVQGDVGSGK 290

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VAL+A+A  V  G Q  +MAP  ILA QHY  + +  ++  I V ++ G++ +  +  
Sbjct: 291 TVVALLALANCVLNGYQGALMAPTEILAGQHYISLTESLKDFGINVGLLIGSLTKKQKDT 350

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE++ + +  I+IGTHAL +D +++  + LVI DEQHRFGV QR KL+ K   P +L+M
Sbjct: 351 VLEQVKNNEIDILIGTHALIEDKVEFNNIGLVITDEQHRFGVMQRSKLSLKGVNPDILVM 410

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKA 485
           TATPIPRTL L   GD+DIS I E P GR+PI+T+ I  ++ D      ++  +  G++ 
Sbjct: 411 TATPIPRTLALILYGDLDISIIDELPPGRQPIETLAIEKSKRDRAYNNLVRREVESGRQV 470

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP +EE +    +S VE    L   +     + ++HG+M   +K+ VM  FKN    
Sbjct: 471 YIVCPLVEESEAIEAKSAVELVEELRAEYFHDLRLGLLHGKMKSSEKDEVMGLFKNKEID 530

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG   S C+L+Y    +  
Sbjct: 531 ILVSTTVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGSHKSYCVLIYDSK-TDV 589

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+++++ T DGF I+E+DL+ R  GE  G +Q G+P+  +A    H  +L++A+++A
Sbjct: 590 CRQRMAIMEETNDGFKISEKDLEIRGPGEFFGTRQHGLPELKVANLFKHIKILKLAQQEA 649

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
           ++IL +D +L      +++  + + ++ +  + I 
Sbjct: 650 RYILGEDNNLQLKENMALKKEI-IDKFKDTLKEIS 683


>gi|74314113|ref|YP_312532.1| ATP-dependent DNA helicase RecG [Shigella sonnei Ss046]
 gi|73857590|gb|AAZ90297.1| DNA helicase [Shigella sonnei Ss046]
 gi|323166861|gb|EFZ52600.1| ATP-dependent DNA helicase RecG [Shigella sonnei 53G]
          Length = 693

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|254515854|ref|ZP_05127914.1| ATP-dependent DNA helicase RecG [gamma proteobacterium NOR5-3]
 gi|219675576|gb|EED31942.1| ATP-dependent DNA helicase RecG [gamma proteobacterium NOR5-3]
          Length = 686

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 253/675 (37%), Positives = 381/675 (56%), Gaps = 19/675 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             L + RGVG K +  L       +   +   DLLF+ P  + DR     I  + +   V
Sbjct: 7   QSLESLRGVGPKLAQRLR------SYGISSVEDLLFHLPLRYQDRTQVTPIGALQDGTEV 60

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            I G I+  S     +RR   + L DGTG  TL FF+      KN   +G ++   G ++
Sbjct: 61  VIEGEIALVSVSGGGRRRSLLVKLQDGTGTATLRFFHFSMAQ-KNALQKGDRLRCFGAVR 119

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           +   +  M+HP Y      D N   +  +Y    G+S   ++K+  +AL  L   P    
Sbjct: 120 RGPAQAEMIHPEYRRSFGNDGNEDSLTPIYPSTEGVSQGQWRKLTDQALLILAKNP---P 176

Query: 191 KDLLQ-KKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRK 245
            +LL  + +   ++ A   +H P    D     + + PA+ RLA +EL A Q+++  +R 
Sbjct: 177 AELLPARNNTYDLSSALRFLHRPPPGADLQALRDGSHPAQLRLALEELTAHQLSMRELRA 236

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + ++     +  +  + ++ +  +PF PT +Q   I++I  D++    MLR++QGDVGSG
Sbjct: 237 RSRERAAPILEDKQGLKKRFIAALPFEPTGAQHRVIEEITADLATAKPMLRLVQGDVGSG 296

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  A   A+ +G Q  +MAP  +LA+QH      +  +  I    + G++    R 
Sbjct: 297 KTIVAAAAALLAIASGYQVAVMAPTELLAEQHRRNFATWFADLNITQMWLAGSVKGQKRG 356

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL---TQKATAPH 422
           +AL  IA+G+A ++IGTHALFQD +Q+ +L LVIVDEQHRFGV QRL L   T   +  H
Sbjct: 357 QALAAIANGEASLVIGTHALFQDGVQFARLGLVIVDEQHRFGVHQRLALSEKTAGESRAH 416

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+MTATPIPRTL + +  D+D S I E P GR+P+ TV+I   R DE+IER+     EG
Sbjct: 417 QLIMTATPIPRTLSMVAYADLDCSIIDELPPGRQPVGTVLIDNQRRDEIIERVAHACREG 476

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++ YW+C  IE+      ++    +  L +     ++A++HGRM   +K++VM +FK G 
Sbjct: 477 RQVYWVCTLIEDSDSLQAQAAESSYAELADALDGIAVALVHGRMKAKEKDAVMSAFKAGE 536

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            +LL+ATTVIEVG+DV +A+++IIEN E  GLAQLHQLRGRVGRG   S C+LLY  PL 
Sbjct: 537 YQLLVATTVIEVGVDVPNATLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYQSPLG 596

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + S  RL V++ + DGF IAEEDL+QR  GE+LG +Q+G+ +F +A+   H+ LL+  + 
Sbjct: 597 QQSRARLQVMRESNDGFYIAEEDLRQRGPGEVLGTRQTGLMEFRVARLPEHEHLLDEVQS 656

Query: 662 DAKHILTQDPDLTSV 676
            A+ +    P L   
Sbjct: 657 MAETLQASQPQLVQP 671


>gi|209921125|ref|YP_002295209.1| ATP-dependent DNA helicase RecG [Escherichia coli SE11]
 gi|209914384|dbj|BAG79458.1| DNA helicase RecG [Escherichia coli SE11]
 gi|324019691|gb|EGB88910.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 117-3]
          Length = 693

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|113461597|ref|YP_719666.1| ATP-dependent DNA helicase RecG [Haemophilus somnus 129PT]
 gi|112823640|gb|ABI25729.1| ATP-dependent DNA helicase [Haemophilus somnus 129PT]
          Length = 693

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 251/688 (36%), Positives = 381/688 (55%), Gaps = 26/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M   FL+ +  PL++  GVG   +  L +I            DLLF+ P  + DR     
Sbjct: 1   MGGQFLDAI--PLTSLSGVGAAIAEKLGRI------GLFSLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++  ++  TI G I Q    Q  +R    + L+DGT +I L FF     M KN F  G
Sbjct: 53  IIDLRIDQHATIEG-IVQTCDIQFGRRPVLVVTLSDGTAKIALRFFNFNAGM-KNGFQLG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G+IK+ +    + HP Y              +  +Y+   GL  +  +K+  +A
Sbjct: 111 ARVKAFGEIKRGRFMAEIHHPEYEIIRDNRPLQLAETLTPIYATTEGLKQNTLRKLTEQA 170

Query: 179 LSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDE 232
           L+ L  +P  E + +       F S+ +A  ++H P      E       PA+ RL ++E
Sbjct: 171 LALLEKMPLAELLPRAF-NPHDF-SLKQAIYVLHRPPPDISLELLEQGKHPAQLRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   +    +P+  +  + Q  L  +P+ PT +Q+  + +I  D+ +  
Sbjct: 229 LLAHNLAMQKVRCGSQHFSALPLRYQTALKQNFLDLLPYQPTNAQQRVVAEIEYDLGRSF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLV  +A   A++ G Q  +M P  ILA+QH    + + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVVALAALTAIDNGKQVALMVPTEILAEQHTANFQHWFEPLGIKV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             +TG +    R+  LE I+ G   +++GTHALFQD +++ +L+LV++DEQHRFGV QRL
Sbjct: 349 GCLTGKVKGKSRQATLEEISQGSIQMVVGTHALFQDDVKFAELVLVVIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL + +  D+DIS I E P GR PI+T+ +   R 
Sbjct: 409 MLREKGKYAGIYPHQLIMTATPIPRTLAMVAYADLDISIIDELPPGRTPIQTIAVSEERR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E++       ++E ++AYW+C  I+E +    ++       L +      I +IHGRM 
Sbjct: 469 TEIVARVYNACVNEKRQAYWVCTLIDESEVLEAQAAESIAEDLQKALPVLRIGLIHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GLAQLHQLRGRVGRG
Sbjct: 529 ASEKQEVMRQFKNAELNLLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y  PLSK S  RL V+++++DGF I+E+DL+ R  GE+LG KQ+G+ +F +
Sbjct: 589 STASYCVLMYKSPLSKVSRKRLEVMRSSQDGFFISEQDLEIRGPGEVLGTKQTGVAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
           A       +L   +  A+ ++T+ P L 
Sbjct: 649 ADLIRDRKMLPTVQHYARLLITRSPKLA 676


>gi|301156627|emb|CBW16098.1| ATP-dependent DNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 693

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 256/677 (37%), Positives = 391/677 (57%), Gaps = 24/677 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   S  LS++            DLLF+ P  + DR     I+++  E+  T
Sbjct: 10  PLTTLSGVGAAISDKLSRL------GIHNLQDLLFHLPIRYEDRTRITPIADLRPEQYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G + Q       +R    + L+DGT +I L FF     M KN F  G ++   G+IK+
Sbjct: 64  IEG-VVQTCEVAFGRRPILTVSLSDGTSKIMLRFFNFNVGM-KNSFQIGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
            +    + HP Y  I  N+  V    +  +YS   GL  +  +K+  +AL+ L    L E
Sbjct: 122 GRFMAEIHHPEYQIIRDNAPLVLEETLTPIYSTTEGLKQNSLRKLTDQALALLDKIQLTE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            +  +        S+ +A   +H P      +       PA++RL ++ELLA  +A+  +
Sbjct: 182 ILPNEFNPHPF--SLKDAIRFLHRPPPDISLDILEKGQHPAQQRLIFEELLAHNLAMQKV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   ++ + +P++ +  + Q+ L ++PF PT +Q   + DI QD+++   M+R++QGDVG
Sbjct: 240 RLGTQQFLALPLHYQTNLKQRFLASLPFQPTNAQNRVVADIEQDLAKDYPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +    
Sbjct: 300 SGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFRRWLEPFGIEVGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RQTELEKIKSGAVQMVVGTHALFQEEVEFADLALVIIDEQHRFGVHQRLMLREKGEKAGF 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV+I   R DE++ R+K   
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEERRDEIVARVKNAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSF 537
           ++E ++AYW+C  I+E +    ++    +  L +      I ++HGRM   +K+ +M +F
Sbjct: 480 INEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLKIGLVHGRMKPQEKQDIMAAF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y 
Sbjct: 540 KSAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +F +A       ++ 
Sbjct: 600 PPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAEFKVANLMRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLT 674
             +  AK ++ + PD+ 
Sbjct: 660 TVQHYAKALIVKYPDVA 676


>gi|331644371|ref|ZP_08345500.1| ATP-dependent DNA helicase RecG [Escherichia coli H736]
 gi|331655285|ref|ZP_08356284.1| ATP-dependent DNA helicase RecG [Escherichia coli M718]
 gi|331036665|gb|EGI08891.1| ATP-dependent DNA helicase RecG [Escherichia coli H736]
 gi|331047300|gb|EGI19378.1| ATP-dependent DNA helicase RecG [Escherichia coli M718]
          Length = 704

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 12  MKGRLLDTV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 63

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 64  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 121

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 122 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 181

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 182 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 239

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+   
Sbjct: 240 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDV 299

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 300 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIKV 359

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 360 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 419

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 420 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 479

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 480 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 539

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 540 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 599

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 600 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 659

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 660 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 704


>gi|126700178|ref|YP_001089075.1| ATP-dependent DNA helicase RecG [Clostridium difficile 630]
          Length = 689

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 247/699 (35%), Positives = 395/699 (56%), Gaps = 19/699 (2%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +L  L+  +   +G+G K +  L+K+            DLL+Y P  F DR+   KI+++
Sbjct: 3   YLLDLYKDVQYVKGIGPKKADKLNKL------GIFTLKDLLYYFPRQFEDRNNLKKIAQL 56

Query: 65  SEERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            +   VTI   IS  ++F  ++     KI + D TG   L+FF +    +KN F  G  I
Sbjct: 57  EDGEKVTIKAVISSINTFSPKEGMTLTKIDVKDETGSAKLVFFNKS--YIKNTFRPGDSI 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V GK+KK  N + +      +  +   N      VY L  G++      II   L    
Sbjct: 115 LVFGKVKKKFNNLELTSCELEYLTNSPKNTCRFMPVYQLTYGVTNKEIMSIIRTVLEDKE 174

Query: 184 VL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
           ++  E++ + +++K    SI  A   IH+P   +       A  R+ ++ELL  Q+ L +
Sbjct: 175 LIIQEYMPQRIIEKYRLCSIDFAVRNIHSPSSKESL---KIALYRIVFEELLILQLGLFV 231

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +    KE GI      K  +KI+  +PF  TK+Q  A+ +I+QDM+ +  M R++QGDV
Sbjct: 232 FKSGRNKEDGIKFET-SKDLKKIISALPFKLTKAQNRALDEIIQDMNLEKIMNRLVQGDV 290

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VAL+A+A  V  G Q  +MAP  ILA QHY  + +  ++  I V ++ G++ + 
Sbjct: 291 GSGKTVVALLALANCVLNGYQGALMAPTEILAGQHYISLTESLKDFGINVGLLIGSLTKK 350

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +   LE+I + +  I+IGTHAL +D +++  + LVI DEQHRFGV QR KL+ K   P 
Sbjct: 351 QKDTVLEQIKNNEIDILIGTHALIEDKVEFNNIGLVITDEQHRFGVMQRSKLSLKGANPD 410

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSE 481
           +L+MTATPIPRTL L   GD+DIS I E P GR+PI+T+ I  ++ D      ++  +  
Sbjct: 411 ILVMTATPIPRTLALILYGDLDISIIDELPPGRQPIETIAIEKSKRDRAYNNLVRREVES 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKN 539
           G++ Y +CP +EE +    +S VE    L   +     + ++HG+M   +K+ VM  FK+
Sbjct: 471 GRQVYIVCPLVEESEAIEAKSAVELVEELRAEYFHDLRLGLLHGKMKSSEKDEVMRLFKD 530

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L++T VIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG   S C+L+Y   
Sbjct: 531 KEIDILVSTIVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGSHKSYCVLIYDSK 590

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +     R+++++ T DGF I+E+DL+ R  GE  G +Q G+P+  +A    H  +L++A
Sbjct: 591 -TDVCRQRMAIMEETNDGFKISEKDLEIRGPGEFFGTRQHGLPELKVANLFKHIKILKLA 649

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
           +++A++IL +D +L      +++  + + ++ +  + I 
Sbjct: 650 QQEARYILGEDNNLQLKENMALKKEI-IDKFKDTLKEIS 687


>gi|170728911|ref|YP_001762937.1| ATP-dependent DNA helicase RecG [Shewanella woodyi ATCC 51908]
 gi|169814258|gb|ACA88842.1| ATP-dependent DNA helicase RecG [Shewanella woodyi ATCC 51908]
          Length = 691

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/696 (37%), Positives = 385/696 (55%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++   GV KK +  L+K+            DLLF+ P  + DR     I+ +      T
Sbjct: 8   PVTELNGVAKKMAERLAKL------GINTVQDLLFHLPLRYEDRTQIYPIASLYPGSYGT 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG + L FF       KN    G  I   G+I++
Sbjct: 62  IEAVIQSSQIVQ-GRKRMMTCTVRDDTGSMVLRFFNFSMAQ-KNGLQNGTLIRAYGEIRR 119

Query: 132 LKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
            K +  ++HP Y   +  D       +  VY    GL    + K+  +ALS L    L E
Sbjct: 120 GKQQPEIIHPEYKLVSEYDSAALSDTLTPVYPTTEGLKQASWIKLTDQALSLLENGGLQE 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L Q  +  S+ EA  ++H P          +   PA++RL  +ELLA  +++L +
Sbjct: 180 LLPPQL-QPNNL-SLKEALQLLHRPHTGVALFELEQGNHPAQQRLIQEELLAHNLSMLKL 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++  ++  I +   G++    L+ +PF PT +Q+    DI +D+ + + M+R++QGDVG
Sbjct: 238 RQRSNQDNAISMPATGQLLNPFLKELPFKPTGAQQRVGADICRDLEKPSPMMRLVQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   + V  + G +    
Sbjct: 298 SGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAINFSQWFEPLGLKVGWLAGKLKGKT 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R ++L  I  G AH++IGTHA+FQD + + KL L+I+DEQHRFGV QRL L +    +  
Sbjct: 358 RAQSLADIESGDAHMVIGTHAIFQDKVIFNKLALIIIDEQHRFGVHQRLGLREKGISQGF 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV +   R  EVIER++  +
Sbjct: 418 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAVSDVRRSEVIERVRQAV 477

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            ++G++ YW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 478 TNDGRQVYWVCTLIDESEVLECQAAEDTAAELSIALAELKIGLVHGRMKSAEKQAVMAEF 537

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 538 KAGNLNLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSIASHCLLMYK 597

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS+ +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+    IA      SL+ 
Sbjct: 598 APLSQMATKRLGVLRQSNDGFIIAQKDLEIRGPGEVLGTKQTGVADMKIADLIRDQSLIP 657

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H++ Q PD  +V G   R L    QY +A
Sbjct: 658 HIQKLAVHVMEQAPD--NVDGIVQRWLGEREQYVQA 691


>gi|309704054|emb|CBJ03400.1| ATP-dependent DNA helicase [Escherichia coli ETEC H10407]
          Length = 693

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R     ++EG++AYW+C  IEE +    ++    +  L       +I ++HGRM 
Sbjct: 469 TDIIDRVHHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|149908557|ref|ZP_01897219.1| RecG-like helicase [Moritella sp. PE36]
 gi|149808391|gb|EDM68328.1| RecG-like helicase [Moritella sp. PE36]
          Length = 690

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 265/675 (39%), Positives = 380/675 (56%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+   +GVG K +  L+K+      N     DLLF+ PS + DR     I ++      T
Sbjct: 7   PVIELKGVGAKMADKLAKL------NLMTVQDLLFHLPSRYQDRTTIYPIQDLLPGLHGT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I         KR+     +NDGTG ITLLFF+      KN F  G+ IT  G+ ++
Sbjct: 61  IEGEIVSC-DVTFGKRKIMSCKVNDGTGIITLLFFHFNAGQ-KNSFSVGKTITAFGEFRR 118

Query: 132 LKNRIIMVHPHYIFH--NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
            +    +VHP Y      S +++   +  +Y    GL     + +  +AL  L    L E
Sbjct: 119 GRFGYEIVHPEYKLAHATSSEMSAETLTPIYPSTEGLKQLTLRNLTDQALQHLSQTTLQE 178

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            + K L        +  A  ++H P      E       PA++RL  +ELLA  I++L +
Sbjct: 179 LLPKGLYT--GQIELNHAIQLLHRPTPDVSLELLEQGQHPAQQRLIIEELLAQNISMLQL 236

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           RK+ ++   I +     +  K L  +PF+PT +Q+  + +I QD+ +   M+R++QGDVG
Sbjct: 237 RKKMQQHPAIKLPAHKTLTDKFLAQLPFTPTNAQQRVVGEIQQDLQKGYPMMRLIQGDVG 296

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+  G Q  +MAP  ILA+QH    K +     I V  ++G      
Sbjct: 297 SGKTLVAALAALQAIGNGYQVALMAPTEILAEQHALNFKGWFNKLGIKVGWLSGKQKGKA 356

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   L  IA G+  +I+GTHA+FQ ++++  L LVI+DEQHRFGV+QRL L +K      
Sbjct: 357 REAELASIASGETQMIVGTHAIFQAAVKFLNLTLVIIDEQHRFGVEQRLALREKGAVNGL 416

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L MTATPIPRTL +T+  D++ S I E P GR PI TV++P  +  ++IER+++ +
Sbjct: 417 YPHQLFMTATPIPRTLAMTAYADLNTSVIDELPPGRTPITTVVMPDTKRSKIIERVELAV 476

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++ YW+C  IEE      ++  +  N L +      I ++HGRM  I+K+ VMD+F
Sbjct: 477 KNEGRQVYWVCTLIEESDVLEAQAAEDTANDLQKQLPDLRIGLVHGRMKSIEKQYVMDAF 536

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG+  S C+LLYH
Sbjct: 537 KTKQLDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGKVASHCVLLYH 596

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RLSVL+ T DGF IA+ DL+ R  GE+LG KQ+G+    +A       L+ 
Sbjct: 597 APLSDTGSKRLSVLRETTDGFKIAQRDLEIRGPGEMLGSKQTGIADLKVADLVRDQHLIP 656

Query: 658 IARKDAKHILTQDPD 672
           + +  A+H+L Q PD
Sbjct: 657 LVQNIARHLLQQHPD 671


>gi|121533683|ref|ZP_01665510.1| ATP-dependent DNA helicase RecG [Thermosinus carboxydivorans Nor1]
 gi|121307674|gb|EAX48589.1| ATP-dependent DNA helicase RecG [Thermosinus carboxydivorans Nor1]
          Length = 684

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 234/695 (33%), Positives = 387/695 (55%), Gaps = 24/695 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG   + +L+K+      N     DLL ++P  + DR Y   I  + +  
Sbjct: 5   LSTNIKYLKGVGPARAAYLAKL------NIFSIEDLLTHYPRRYEDRSYFKPIKLLEDNE 58

Query: 69  IVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           + T    +      + ++     K+ + D +    L++F +     K  +  G ++ V G
Sbjct: 59  VQTFRATVVAVEERKPRRGLTLTKVTVRDDSAVAQLVWFNQS--YRKTRYRPGMELIVYG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           K ++  N I +V+P     +  +  +N   I  VY     ++  + ++++ +AL+    +
Sbjct: 117 KAERRFNTIQLVNPEVEIVDEVEELLNVGRIVPVYPATENINQRVLRQLVRQALTDCHPI 176

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PE +  +++ + +     +A   IH P    D +  + AR RL ++EL   Q  LL ++ 
Sbjct: 177 PEILPGNIICRYNLIGRDQALESIHFPP---DKDALTQARRRLVFEELFFLQYGLLYLKN 233

Query: 246 QFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           + K E   I    +GK+++++L  +PF+ T  Q+ A+++I  DM     M R+LQGDVGS
Sbjct: 234 RNKHEFQGIKHAQDGKLSKEVLARLPFTLTTDQQVALQEIKADMEDTRPMQRLLQGDVGS 293

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++A +A+   VE G Q  +MAP  ILA+QH+  + +   N  I + ++TG + +  R
Sbjct: 294 GKTVIAALALVKTVENGYQGAMMAPTEILAEQHFHTLSRLLANLGIRLALLTGRLTKRER 353

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
            + L  + +G   I+IGTHAL QD + +  L LV+ DEQHRFGV+QR  L  K   P VL
Sbjct: 354 DQVLANLRNGLVDIVIGTHALLQDDVHFKHLGLVVTDEQHRFGVRQRALLQAKGKMPDVL 413

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRT+ LT  GD+D+S I   P GRKPIKT  +       V   +   ++ G++
Sbjct: 414 VMTATPIPRTMALTVYGDLDVSVIRTLPPGRKPIKTYSVTGEMRGRVYNFVAREVAAGRQ 473

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTC 542
           AY +CP +EE  +   R+ V+ +  L   +    +  ++HG+M   +K++VM++F +G  
Sbjct: 474 AYVVCPLVEESDKLEARAAVQMYEQLARTYFKGLTCGLVHGKMKSQEKDAVMNAFYSGKI 533

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++LIATTVIEVG++V +A++++IE A+ FGLAQLHQLRGR+GRGE  S CIL+     S+
Sbjct: 534 QVLIATTVIEVGVNVPNATVMVIEGADRFGLAQLHQLRGRIGRGEHQSFCILISDSK-SE 592

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            S  RL+++  T+DGF++AE+DL  R  G+  G +Q GMP   IA       +L  AR+ 
Sbjct: 593 ESKERLAIMTTTQDGFVLAEKDLLLRGPGQFFGTRQHGMPDLKIADIVRDLDILLEARQA 652

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
           A+  +T+ P++ +     +++     ++ EAF  I
Sbjct: 653 AQQAVTR-PEIFNELQSVLKL-----RFGEAFNMI 681


>gi|110643893|ref|YP_671623.1| ATP-dependent DNA helicase RecG [Escherichia coli 536]
 gi|191170316|ref|ZP_03031869.1| ATP-dependent DNA helicase RecG [Escherichia coli F11]
 gi|300983467|ref|ZP_07176614.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 200-1]
 gi|110345485|gb|ABG71722.1| ATP-dependent DNA helicase RecG [Escherichia coli 536]
 gi|190909124|gb|EDV68710.1| ATP-dependent DNA helicase RecG [Escherichia coli F11]
 gi|300306931|gb|EFJ61451.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 200-1]
 gi|324012713|gb|EGB81932.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 60-1]
          Length = 693

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D +    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLDTGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDA 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DK++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PADKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|90415469|ref|ZP_01223403.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2207]
 gi|90332792|gb|EAS47962.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2207]
          Length = 705

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 258/711 (36%), Positives = 380/711 (53%), Gaps = 35/711 (4%)

Query: 8   PLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           PL +  +   RGVG   S  L K+            DLLF+ P  +IDR     I  +  
Sbjct: 5   PLHSIGVEKLRGVGPLLSAKLQKL------GLYTIQDLLFHLPLRYIDRTKITAIGGVQP 58

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              V I G + + S     +RR     + D +G ITL FF+      +     G K+   
Sbjct: 59  LTEVVIEGEV-RGSDVVFGRRRSLVCRVQDHSGLITLRFFHFNQAQ-QQGLQPGTKVRCF 116

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           G++++ K+ + M HP Y   N          +  +Y    G++    + +  +AL  L  
Sbjct: 117 GEVRRGKSGLEMYHPEYQLLNQSQPPALAETLTPIYPATEGVTQQRIRDLCGQALKLLEQ 176

Query: 185 --LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQI 238
             + +W+   L    S   + +A +++HNP          E   PA++RLA +EL+A  +
Sbjct: 177 QGIEDWMPAALNNGSSNYCLVDALHLLHNPPPGTALNLLAEGEHPAQQRLASEELVAHHL 236

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +LL +R++ + +    +       ++ L  +PF+ T +Q+    +I  D+SQ   MLR++
Sbjct: 237 SLLRLRQKIQHQAAPALLPNQSATERFLAQLPFTLTGAQQRVTNEISADISQPIPMLRLI 296

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA +    AV  G QA +MAP  ILA+QH    + +     I +  +TG 
Sbjct: 297 QGDVGSGKTVVAALGAVQAVANGMQAALMAPTEILAEQHRVNFESWLAPLGIRIAWLTGK 356

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK- 417
                R   L  IA G A I+IGTHALFQ+++ ++ L L I+DEQHRFGV QRL L +K 
Sbjct: 357 FKGKGREVQLAAIADGSAQIVIGTHALFQEAVAFHNLGLTIIDEQHRFGVHQRLALRKKG 416

Query: 418 --------------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                         A+ PH L+MTATPIPRTL +++  D+D S I E P GRKPI+TV++
Sbjct: 417 AVIDAQIDEEGYGEASTPHQLIMTATPIPRTLAMSAYADLDCSVIDELPPGRKPIETVVL 476

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTSSIAIIH 522
              R ++VIER++    +G++AYW+C  IEE        +              SI +IH
Sbjct: 477 NDLRRNDVIERVRASCQDGRQAYWVCTLIEESDVLEAQAAEATAQELQLLLSELSIGLIH 536

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GR+   +K  +M +FK G   LL+ATTVIE+G+DV +AS++IIEN+E  GL+QLHQLRGR
Sbjct: 537 GRLKPKEKVQIMQAFKAGEINLLVATTVIEIGVDVPNASLMIIENSERLGLSQLHQLRGR 596

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG + S C+LLY  PLS N   RL +++ T DGF IAE+DL+ R  GE+LG +Q+G  
Sbjct: 597 VGRGTQSSHCVLLYSAPLSGNGAARLKIMRETNDGFKIAEKDLEIRGPGEVLGTRQTGDM 656

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           +F IA  +    LL   ++ A  +L    D  +V     R L +  QY +A
Sbjct: 657 QFRIADLQRDAHLLPEVKRMAIMLLQDYTD--NVDPLIGRWLGHSEQYGQA 705


>gi|293413086|ref|ZP_06655754.1| ATP-dependent DNA helicase RecG [Escherichia coli B354]
 gi|291468733|gb|EFF11226.1| ATP-dependent DNA helicase RecG [Escherichia coli B354]
          Length = 693

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLTKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|218691935|ref|YP_002400147.1| ATP-dependent DNA helicase RecG [Escherichia coli ED1a]
 gi|218429499|emb|CAR10322.1| ATP-dependent DNA helicase [Escherichia coli ED1a]
          Length = 693

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   AV  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 IDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMTSFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ANLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|30065072|ref|NP_839243.1| ATP-dependent DNA helicase RecG [Shigella flexneri 2a str. 2457T]
 gi|56480396|ref|NP_709432.2| ATP-dependent DNA helicase RecG [Shigella flexneri 2a str. 301]
 gi|110807670|ref|YP_691190.1| ATP-dependent DNA helicase RecG [Shigella flexneri 5 str. 8401]
 gi|30043333|gb|AAP19054.1| DNA helicase [Shigella flexneri 2a str. 2457T]
 gi|56383947|gb|AAN45139.2| DNA helicase [Shigella flexneri 2a str. 301]
 gi|110617218|gb|ABF05885.1| ATP-dependent DNA helicase recG [Shigella flexneri 5 str. 8401]
 gi|281603015|gb|ADA75999.1| ATP-dependent DNA helicase recG [Shigella flexneri 2002017]
 gi|313647473|gb|EFS11923.1| ATP-dependent DNA helicase RecG [Shigella flexneri 2a str. 2457T]
 gi|332749892|gb|EGJ80304.1| ATP-dependent DNA helicase RecG [Shigella flexneri K-671]
 gi|332750610|gb|EGJ81018.1| ATP-dependent DNA helicase RecG [Shigella flexneri 4343-70]
 gi|332751321|gb|EGJ81724.1| ATP-dependent DNA helicase RecG [Shigella flexneri 2747-71]
 gi|332764146|gb|EGJ94383.1| ATP-dependent DNA helicase RecG [Shigella flexneri 2930-71]
 gi|332996122|gb|EGK15749.1| ATP-dependent DNA helicase RecG [Shigella flexneri VA-6]
 gi|332997250|gb|EGK16866.1| ATP-dependent DNA helicase RecG [Shigella flexneri K-218]
 gi|333012920|gb|EGK32297.1| ATP-dependent DNA helicase RecG [Shigella flexneri K-304]
          Length = 693

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|66043471|ref|YP_233312.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. syringae
           B728a]
 gi|289672854|ref|ZP_06493744.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. syringae
           FF5]
 gi|63254178|gb|AAY35274.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. syringae
           B728a]
          Length = 691

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 253/694 (36%), Positives = 394/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+K+            D+LF+ P  + DR     I  +   +   
Sbjct: 8   SVTALKGVGEAMAEKLAKV------GLETLQDVLFHLPLRYQDRTRIVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+ ++L +      + +A   +H+P    D E        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVEELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGDVG
Sbjct: 240 RESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +    
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K      
Sbjct: 360 RVASLEQIAGGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 QGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPQHVSPL--LDRWLRHGQQYGQ 690


>gi|127514435|ref|YP_001095632.1| ATP-dependent DNA helicase RecG [Shewanella loihica PV-4]
 gi|126639730|gb|ABO25373.1| ATP-dependent DNA helicase RecG [Shewanella loihica PV-4]
          Length = 691

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 256/695 (36%), Positives = 398/695 (57%), Gaps = 26/695 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GV  K +  L K+            DLLF+ P  + DR     I+ +      TI
Sbjct: 9   VTELKGVAAKMAQRLEKL------GINTVQDLLFHLPLRYEDRTQIYPIAALYPGSYGTI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G I      Q  ++R     + D +G ITL FF     M +N   EG +I   G++++ 
Sbjct: 63  EGIIQSTQIVQ-GRKRMLTCTVRDDSGTITLRFFNFSAAM-RNGLEEGERIRAYGEVRRG 120

Query: 133 KNRIIMVHPHYIFHNSQDV--NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--EW 188
           K    ++HP Y   N +        +  +Y    GL    + ++  +AL+ L      E 
Sbjct: 121 KLHREIIHPEYKMLNGESDFSLSDTLTPIYPTTEGLKQASWIRLTDQALALLAHGALTEL 180

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKA----KDFEWTSPARERLAYDELLAGQIALLLMR 244
           +   L   +   S+ +A  ++H P          + T PA++RL  +ELLA  +++L +R
Sbjct: 181 LPPQLRPNQ--LSLVDALQLLHRPPSEVSPFALEQGTHPAQQRLIQEELLAHNLSMLQLR 238

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            +   +  I +   G++    L ++PF PT +Q+  + DI QD+ + + M+R++QGDVGS
Sbjct: 239 ARSNHDKAIAMQPTGQLLNPFLASLPFKPTGAQQRVVADITQDLDKAHPMMRLVQGDVGS 298

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA +A   A+E+G Q  +MAP  +LA+QH      + ++  + V  + G +    R
Sbjct: 299 GKTLVAALAALQAIESGYQVAMMAPTELLAEQHANNFAAWFEHLGLTVGWLAGKLKGKAR 358

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KATA 420
            ++L++I  G+AHI+IGTHA+FQ+ +++ +L L+I+DEQHRFGV QRL L +    +   
Sbjct: 359 AQSLQQIKSGEAHIVIGTHAIFQEQVEFNRLALIIIDEQHRFGVHQRLGLREKGIRQGFH 418

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-VL 479
           PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I  NR  EVI+R++   L
Sbjct: 419 PHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAISDNRRGEVIDRVRQAAL 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            +G++AYW+C  IEE +    ++  +    L +     +I ++HGRM   +K+++MD+FK
Sbjct: 479 QDGRQAYWVCTLIEESEVLECQAAEDTAEELKQLLPELAIGLVHGRMKPAEKQAIMDAFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G+ +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY  
Sbjct: 539 AGSIQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKA 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS  +  RL VL+++ DGF+IA++DL+ R  GE+LG KQ+G+    IA      +L+  
Sbjct: 599 PLSHTATQRLGVLRDSNDGFVIAQKDLEIRGPGEVLGTKQTGIADMKIADLVRDQALIPH 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            +K A+H++ + P+  +V    +R L    QY +A
Sbjct: 659 IQKLAQHVMQEVPE--NVDAIVLRWLGERQQYVQA 691


>gi|323189441|gb|EFZ74722.1| ATP-dependent DNA helicase RecG [Escherichia coli RN587/1]
          Length = 693

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGSRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSTNDALKNKLLAALPFKPTGAQVRVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   AV  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMTSFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|330986881|gb|EGH84984.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 691

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 253/694 (36%), Positives = 393/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+K+            D+LF+ P  + DR     I  +   +   
Sbjct: 8   SVTALKGVGEAMAEKLAKV------GLETLQDVLFHLPLRYQDRTRVVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+  +L +      + +A   +H+P    D E        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGDVG
Sbjct: 240 RESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +    
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K      
Sbjct: 360 RATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAEKAAIMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 QGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPQHVSPL--LDRWLRHGQQYGQ 690


>gi|256021344|ref|ZP_05435209.1| ATP-dependent DNA helicase RecG [Shigella sp. D9]
 gi|300815108|ref|ZP_07095333.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 107-1]
 gi|300532000|gb|EFK53062.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 107-1]
          Length = 693

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 388/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|330909713|gb|EGH38227.1| ATP-dependent DNA helicase RecG [Escherichia coli AA86]
          Length = 693

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 384/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSTNDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   AV  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             +        R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLARKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMTSFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|215488947|ref|YP_002331378.1| ATP-dependent DNA helicase RecG [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967979|ref|ZP_07782190.1| ATP-dependent DNA helicase RecG [Escherichia coli 2362-75]
 gi|215267019|emb|CAS11464.1| ATP-dependent DNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|312287238|gb|EFR15147.1| ATP-dependent DNA helicase RecG [Escherichia coli 2362-75]
          Length = 693

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGSRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   AV  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 IDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMTSFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|167622325|ref|YP_001672619.1| ATP-dependent DNA helicase RecG [Shewanella halifaxensis HAW-EB4]
 gi|167352347|gb|ABZ74960.1| ATP-dependent DNA helicase RecG [Shewanella halifaxensis HAW-EB4]
          Length = 696

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 257/696 (36%), Positives = 391/696 (56%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV  K +  L+K+        T   DLLF+ P  + DR     I+ +      T
Sbjct: 13  PITDLKGVANKMAERLAKLS------ITTVQDLLFHLPLRYEDRTQVYPIASLYPGSYGT 66

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG +TL FF       +N    G  I   G+I++
Sbjct: 67  IEAVIQSSQIIQ-GRKRMLTCTVRDDTGSLTLRFFNFSVAQ-RNGLEIGMTIRAYGEIRR 124

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
            K+   ++HP Y +    +D+     +  VY    GL    + K+  +AL+ L    L E
Sbjct: 125 GKHFAEIIHPEYKLISPGEDLQLSDTLTPVYPTTEGLKQASWIKLTEQALAMLDNGGLQE 184

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +  +L Q  +   + +A  I+H P          + T PA++RL  +ELLA  +++L +
Sbjct: 185 LLPPNL-QPNNL-DLKQALQILHRPNNQVSLFELEQGTHPAQQRLIQEELLAHNLSMLRL 242

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++  ++  + ++  G++    L ++PF PT +Q+  + DI QD+++   M+R++QGDVG
Sbjct: 243 RQRSNRDKAVSMHATGQLLNPFLASLPFKPTGAQQRVVADITQDLAKHEPMMRLVQGDVG 302

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTL+A +A   A+E+G Q  +MAP  +LA+QH      + +   + V  + G +    
Sbjct: 303 SGKTLIAALAALQAIESGYQVAMMAPTELLAEQHALNFSSWFEPLGLKVGWLAGKLKGKA 362

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R ++L  I  G AHI+IGTHA+FQ+ + + KL L+I+DEQHRFGV QRL L +    +  
Sbjct: 363 RAQSLADIESGDAHIVIGTHAIFQEQVVFNKLALIIIDEQHRFGVHQRLGLREKGISQGF 422

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I   R DEVI+R++   
Sbjct: 423 HPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAISEQRRDEVIDRVRQAA 482

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++ ++ YW+C  IEE +    ++  +    L        + ++HGRM   +K+ +M  F
Sbjct: 483 INDKRQTYWVCTLIEESEVLECQAAEDTAEELKRVLPELKVGLVHGRMKPAEKQQIMADF 542

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 543 KAGELNLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 602

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS  +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+    IA     ++L+ 
Sbjct: 603 PPLSATATKRLGVLRQSNDGFVIAQQDLEIRGPGEVLGTKQTGIADMKIADLMRDEALIP 662

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H++ Q P  TSV     R L    Q+ +A
Sbjct: 663 HVQKLAAHVMQQAP--TSVDAIIERWLGDREQFVQA 696


>gi|227327133|ref|ZP_03831157.1| ATP-dependent DNA helicase RecG [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 693

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 249/686 (36%), Positives = 381/686 (55%), Gaps = 26/686 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   LN    PLST  GVG   +  L+++            DLL + P  + DR +   
Sbjct: 1   MKGRLLN--TQPLSTLTGVGASQAAKLARL------GLETVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      T+ G I + +      RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGDLLPGMYATVEGEILR-NDITFGSRRMLTCQISDGSGMLTMRFFNFSAAM-KNSLAPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + +T  G+IK+ K    ++HP Y       Q      +  VY    G+     +K+  +A
Sbjct: 111 QHVTAYGEIKRGKIGAEIIHPEYRVQGDSTQVELQESLTPVYPSTEGVRQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA----KDFEWTSPARERLAYDE 232
           L+ L    + E + + L   +S  S+ +A   +H P       +      PA++RL  +E
Sbjct: 171 LALLDANPIDELLPESL--SRSLISLPDALRTLHRPPPDMQLSELEHGKHPAQQRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P+  +  + Q++L  +PF PT++QE  + +I  DM++  
Sbjct: 229 LLAHNLSMLAVRAGEQRHKASPLQAQDGLKQRLLAALPFKPTQAQERVVAEIETDMAKDF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIANGKQVALMAPTELLAEQHAHNFRQWFEPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   + IA GQ  +++GTHA+FQ  +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQDAIASGQVSMVVGTHAIFQQQVKFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K        H L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R 
Sbjct: 409 ALWEKGEEQGFHAHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDSRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++IER+      EG++AYW+C  IEE      ++       L     +  + ++HGRM 
Sbjct: 469 SDIIERVNNACQQEGRQAYWVCTLIEESDLLEAQAAEATSEELKAALPNLKVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 AQEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  P+SK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPMSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A       L+   ++ A+H+    P+
Sbjct: 649 ADLLRDQELIPQVQRVARHLHEHYPE 674


>gi|332304825|ref|YP_004432676.1| ATP-dependent DNA helicase RecG [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172154|gb|AEE21408.1| ATP-dependent DNA helicase RecG [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 701

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 254/700 (36%), Positives = 390/700 (55%), Gaps = 30/700 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P++  +GVG K +  L K+            DLLF+ P  + DR     I+++     
Sbjct: 16  QTPVTQLKGVGSKVAEKLEKL------GLHSVQDLLFHLPHRYEDRTRIYPIADLMPHLH 69

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            ++ G +      Q  ++R   + ++D TG ITL FF+      KN   +G  I   G++
Sbjct: 70  TSVEGEVMSC-DVQFGRKRMLIVRMSDSTGTITLRFFHFSAAQ-KNSLEKGTHIRCFGEV 127

Query: 130 KKLKNRIIMVHPHYIFHNSQDV--NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--L 185
           +  K  + ++HP Y   ++         +  VY    G+     + +  +AL  L    L
Sbjct: 128 RAGKYGLEIMHPEYKIISTDSSVQLAESLTPVYPSTEGVKQVTLRNLTEQALGLLDKGGL 187

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL 241
            E +  D+ Q++    + EA +++H P          E   PA++RLA +ELLA  +++L
Sbjct: 188 AELLPNDVYQQQ--VGLIEALHLVHRPPPDVTLALLEEGKHPAQQRLALEELLAHHLSVL 245

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R+Q +++ G  I     +  ++L ++PF  T +Q+  I+DI QDM +   M+R++QGD
Sbjct: 246 KVRQQSQQQKGFAITPSNPLLTQLLDSLPFDLTGAQQRVIQDIQQDMQRPTPMMRLVQGD 305

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A  +A+ AG Q V+MAP  +LA+QH    + +     I V  + G +  
Sbjct: 306 VGSGKTLVAAMAALSAISAGYQVVMMAPTELLAEQHMNNFQGWFAPLGIEVGWLAGKLKG 365

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT----QK 417
             R + LE +A G+  +++GTHA+FQ+++QY  L LVIVDEQHRFGV QRL L     Q+
Sbjct: 366 KARNETLENLASGKLQLLVGTHAVFQEAVQYQSLALVIVDEQHRFGVHQRLALREKGLQQ 425

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPRTL +T+  D+D S I E P GR PI TV++P  R  +V+ER+++
Sbjct: 426 DAFPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPITTVVLPETRRVDVVERVRL 485

Query: 478 V-LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             +  G++ YW+C  IEE +    ++  E   +L        + ++HGR+   +K+ +M+
Sbjct: 486 ATVEHGRQTYWVCTLIEESEVLQSQAAEETAIALATALPELKVGLVHGRLKADEKQRLME 545

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L+
Sbjct: 546 QFKAGEMDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVESHCVLM 605

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PL+K +  RL+VL+ + DGF IA++DL+ R  GE+LG KQ+G+    IA      +L
Sbjct: 606 YQSPLTKVAAKRLAVLRESHDGFYIAQQDLEIRGPGELLGTKQTGLADLRIADLVRDAAL 665

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSI--RILLYLYQYNEA 693
           +   +  +  +        S   Q+I  R L     Y  A
Sbjct: 666 IPQVQTLSVQLWEHH----SANAQAIINRWLGDKEHYGHA 701


>gi|331649466|ref|ZP_08350552.1| ATP-dependent DNA helicase RecG [Escherichia coli M605]
 gi|331041964|gb|EGI14108.1| ATP-dependent DNA helicase RecG [Escherichia coli M605]
          Length = 704

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 384/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 12  MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 63

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 64  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 121

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 122 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 181

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 182 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 239

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 240 LLAHNLSMLALRAGAQRFHAQPLSTNDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 299

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   AV  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 300 PMMRLVQGDVGSGKTLVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 359

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             +        R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 360 GWLARKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 419

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 420 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 479

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 480 TDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 539

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 540 PAEKQAVMTSFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 599

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 600 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 659

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 660 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 704


>gi|330952140|gb|EGH52400.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae Cit 7]
          Length = 691

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 253/694 (36%), Positives = 393/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+K+            D+LF+ P  + DR     I  +   +   
Sbjct: 8   SVTALKGVGEAMAEKLAKV------GLETLQDVLFHLPLRYQDRTRIVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+  +L +      + +A   +H+P    D E        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGDVG
Sbjct: 240 RESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +    
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K      
Sbjct: 360 RVASLEQIAGGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 QGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPQHVSPL--LDRWLRHGQQYGQ 690


>gi|323182443|gb|EFZ67847.1| ATP-dependent DNA helicase RecG [Escherichia coli 1357]
          Length = 693

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVMQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIKV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|170718699|ref|YP_001783891.1| ATP-dependent DNA helicase RecG [Haemophilus somnus 2336]
 gi|168826828|gb|ACA32199.1| ATP-dependent DNA helicase RecG [Haemophilus somnus 2336]
          Length = 693

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 250/688 (36%), Positives = 381/688 (55%), Gaps = 26/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M   FL+ +  PL++  GVG   +  L +I            DLLF+ P  + DR     
Sbjct: 1   MGGQFLDAI--PLTSLSGVGAAIAEKLGRI------GLFSLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++  ++  TI G I Q    Q  +R    + L+DGT +I L FF     M KN F  G
Sbjct: 53  IIDLRIDQHATIEG-IVQTCDIQFGRRPVLVVTLSDGTAKIALRFFNFNAGM-KNGFQLG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G+IK+ +    + HP Y              +  +Y+   GL  +  +K+  +A
Sbjct: 111 ARVKAFGEIKRGRFMAEIHHPEYEIIRDNRPLQLAETLTPIYATTEGLKQNTLRKLTEQA 170

Query: 179 LSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDE 232
           L+ L  +P  E + +       F S+ +A  ++H P      E       PA+ RL ++E
Sbjct: 171 LALLEKMPLAELLPRAF-NPHDF-SLKQAIYVLHRPPPDISLELLEQGKHPAQLRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   +    +P+  +  + Q  L  +P+ PT +Q+  + +I  D+ +  
Sbjct: 229 LLAHNLAMQKVRCGSQHFSALPLRYQTALKQNFLDLLPYQPTNAQQRVVAEIEYDLGRSF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLV  +A   A++ G Q  +M P  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVVALAALTAIDNGKQVALMVPTEILAEQHTANFQRWFEPLGIRV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             +TG +    R+  LE I+ G   +++GTHALFQD +++ +L+LV++DEQHRFGV QRL
Sbjct: 349 GCLTGKVKGKFRQATLEEISQGNIQMVVGTHALFQDDVKFAELVLVVIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL + +  D+D S I E P GR PI+T+ +   R 
Sbjct: 409 MLREKGKYAGIYPHQLIMTATPIPRTLAMVAYADLDTSIIDELPPGRTPIQTIAVSEERR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            E++       ++E ++AYW+C  I+E +    ++       L +      I +IHGRM 
Sbjct: 469 TEIVARVYNACVNEKRQAYWVCTLIDESEVLEAQAAESIAEDLQKALPVLRIGLIHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GLAQLHQLRGRVGRG
Sbjct: 529 VSEKQEVMRQFKNAELNLLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y  PLSK S  RL V+++++DGF I+E+DL+ R  GE+LG KQ+G+ +F +
Sbjct: 589 STASYCVLMYKSPLSKVSRKRLEVMRSSQDGFFISEQDLEIRGPGEVLGTKQTGVAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
           A       +L   +  A+ ++T+ P L 
Sbjct: 649 ADLIRDRKMLPTVQHYARLLITRSPKLA 676


>gi|330972219|gb|EGH72285.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 691

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 254/694 (36%), Positives = 393/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+K+            D+LF+ P  + DR     I  +   +   
Sbjct: 8   SVTALKGVGEAMAEKLAKV------GLETLQDVLFHLPLRYQDRTRIVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+ ++L +      + +A   +H+P    D E        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVEELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + V  K+ ++ L N+ F+PT +Q+   K+I  D+SQ   MLR +QGDVG
Sbjct: 240 RESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEIAYDLSQPEPMLRPIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +    
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K      
Sbjct: 360 RVASLEQIAGGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 QGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPQHVSPL--LDRWLRHGQQYGQ 690


>gi|303252704|ref|ZP_07338866.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248898|ref|ZP_07530909.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648443|gb|EFL78637.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854593|gb|EFM86785.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 693

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 269/696 (38%), Positives = 386/696 (55%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I            DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTALSGVGVAIAEKLSRI------GINNVQDLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            +    + HP Y  I +N        +  +YS   GL  +  +K+  +AL+ L  +   E
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALALLDKIKVGE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
            +  +    K   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  +
Sbjct: 182 LLPDEYNPHK--YSLKEALQLLHRPPPDISAEQLEKGEHPAQKRLIFEELLAHNLAMQQV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R    +    P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDVG
Sbjct: 240 RVGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   LE I +G+  +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDGI 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+    
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAAC 479

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+ +M  F
Sbjct: 480 KNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 540 KAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++ 
Sbjct: 600 PPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           + +  AK I+ Q+P L        R L    +Y+ A
Sbjct: 660 LVQNYAKQIIQQNPPLA--EALIRRWLGERTEYSNA 693


>gi|50118999|ref|YP_048166.1| ATP-dependent DNA helicase RecG [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609525|emb|CAG72958.1| putative ATP-dependent DNA helicase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 693

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 250/686 (36%), Positives = 380/686 (55%), Gaps = 26/686 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   LN    PLST  GVG   +  L+++            DLL + P  + DR +   
Sbjct: 1   MKGRLLN--TQPLSTLAGVGASQAAKLARL------GLETVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      T+ G I + +      RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGDLLPGMYATVEGEILR-NDITFGSRRMLTCQISDGSGLLTMRFFNFSAAM-KNSLAPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++T  G+IK+ K    ++HP Y       Q      +  VY    G+     +K+  +A
Sbjct: 111 QRVTAYGEIKRGKIGAEIIHPEYRVQGDSTQVELQESLTPVYPSTEGIRQATLRKLTDQA 170

Query: 179 LSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA----KDFEWTSPARERLAYDE 232
           L  L    + E + + L   +S  S+ +A   +H P       +      PA++RL  +E
Sbjct: 171 LELLAANHIDELLPESL--SRSLISLPDALRTLHRPPPDMQLSELEHGKHPAQQRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P+  +  + Q++L  +PF+PT++QE  + +I  DM +  
Sbjct: 229 LLAHNLSMLAVRAGEQRHKASPLPTKDSLKQQLLAALPFTPTQAQERVVAEIETDMKKDF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIANGKQVALMAPTELLAEQHVHNFRQWFEPLGLEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   + IA GQ  +++GTHA+FQ  +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQDAIASGQVSMVVGTHAIFQQQVKFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDSRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++IER+      EG++AYW+C  IEE      ++       L     +  + ++HGRM 
Sbjct: 469 SDIIERVNSACQQEGRQAYWVCTLIEESDLLEAQAAEATSEELKAALPNLKVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K +VM +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 AQEKLAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  P+SK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPMSKTAQKRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A       L+    + A+H+    P+
Sbjct: 649 ADLLRDRDLIPQVHRVARHLHEHYPE 674


>gi|12518411|gb|AAG58796.1|AE005592_7 DNA helicase, resolution of Holliday junctions, branch migration
           [Escherichia coli O157:H7 str. EDL933]
          Length = 704

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 12  MTGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 63

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 64  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 121

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 122 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 181

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 182 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 239

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 240 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 299

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V
Sbjct: 300 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEV 359

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 360 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 419

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 420 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 479

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 480 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 539

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 540 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 599

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 600 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 659

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 660 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 704


>gi|170766831|ref|ZP_02901284.1| ATP-dependent DNA helicase RecG [Escherichia albertii TW07627]
 gi|170124269|gb|EDS93200.1| ATP-dependent DNA helicase RecG [Escherichia albertii TW07627]
          Length = 693

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAAQSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLETCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +++I R++     EG++AYW+C  IEE +    ++    +  L       +I ++HGRM 
Sbjct: 469 NDIIARVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QRAKALIERWMPETERYSNA 693


>gi|256425864|ref|YP_003126517.1| ATP-dependent DNA helicase RecG [Chitinophaga pinensis DSM 2588]
 gi|256040772|gb|ACU64316.1| ATP-dependent DNA helicase RecG [Chitinophaga pinensis DSM 2588]
          Length = 703

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 248/699 (35%), Positives = 382/699 (54%), Gaps = 24/699 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG +    L K I         F DLL+Y P  ++DR    KI  +  + 
Sbjct: 8   LSNPIEYLKGVGPQRGELLRKEI-----GVHTFRDLLYYFPFRYVDRTNVEKIISLHMQM 62

Query: 69  -IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V I G I++      ++ +     L D TGEI+L++F +  + ++          V G
Sbjct: 63  DYVQIRGKITRMEVIGDKRAKRLVATLRDETGEISLVWF-QGWQWVEKSLQTNVAYLVFG 121

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPT-----GLSVDLFKKIIVEALSR 181
           KI      + M HP       +       +E VY         GL+     K+    L +
Sbjct: 122 KIAVFNGYLQMSHPEMDLVTEETATGKQFLEPVYYTTEKLKARGLTAKAIGKLTKNLLEQ 181

Query: 182 LPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           L    +PE I   +LQ+      A+A   IH P    D       R RL ++EL   QI 
Sbjct: 182 LSPGEIPENIPTSILQQYRLMDRAKAHFKIHLPVNEDDANLA---RRRLKFEELFIAQIR 238

Query: 240 LLLMR-KQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +  ++ ++ +   G   N  G         ++PF+ T +Q+  +K+I QD +   +M R+
Sbjct: 239 ICRLKIRRQQSSRGFVFNTVGDAFNTFYNEHLPFTLTGAQKRVLKEIRQDTATGRQMNRL 298

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VAL+ M  AV+ G QA +MAP  IL+QQHY+ I +  +   + V ++TG
Sbjct: 299 IQGDVGSGKTMVALLTMLLAVDNGFQACLMAPTEILSQQHYKSISELLEQMPVKVALLTG 358

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           N+    R++ L+ +  G+ HI+IGTHAL +  + +  L + IVDEQHRFGV QR +L QK
Sbjct: 359 NVKGKARKQILKAVEEGEIHILIGTHALLEPQVVFKNLGMAIVDEQHRFGVAQRARLWQK 418

Query: 418 ATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
            T P H+L+MTATPIPRTL +T  GD+D+S I E P GRKPI TV     +  +V++ +K
Sbjct: 419 NTMPPHILVMTATPIPRTLAMTVYGDLDVSVIDELPPGRKPITTVHRTEFQRPQVMDFIK 478

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESV 533
             + +G++AY + P IE+ +  ++ ++++ +  +   F      I+++HGR     KE+ 
Sbjct: 479 EEIRKGRQAYIVYPLIEDSETLDYENLMKGYEEVKAFFPEPQYYISMVHGRQPVDMKETN 538

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F  G  ++++ATTVIEVG++V +AS+++IE+ E FGL+QLHQLRGRVGRG E S CI
Sbjct: 539 MQRFVKGDTQIMVATTVIEVGVNVPNASVMVIESTERFGLSQLHQLRGRVGRGAEQSFCI 598

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+    +  +S  R+ V+  T DGF+I+E+D++ R  G+I G +QSG+    +A      
Sbjct: 599 LMTGNKVGADSKERIQVMVQTNDGFVISEKDMELRGPGDIEGTRQSGLIDLKLADIVEDR 658

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            +LE AR  A+ +L +DPDL+    QS++  L   Q   
Sbjct: 659 PILEAARASAEKLLQEDPDLSMPENQSLQQFLAAQQGKS 697


>gi|300919780|ref|ZP_07136255.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 115-1]
 gi|300413133|gb|EFJ96443.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 115-1]
          Length = 693

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDTV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIEHDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|300822422|ref|ZP_07102562.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 119-7]
 gi|301325335|ref|ZP_07218842.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 78-1]
 gi|331670493|ref|ZP_08371332.1| ATP-dependent DNA helicase RecG [Escherichia coli TA271]
 gi|300525069|gb|EFK46138.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 119-7]
 gi|300847862|gb|EFK75622.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 78-1]
 gi|320201322|gb|EFW75903.1| ATP-dependent DNA helicase RecG [Escherichia coli EC4100B]
 gi|324116009|gb|EGC09935.1| ATP-dependent DNA helicase RecG [Escherichia coli E1167]
 gi|331062555|gb|EGI34475.1| ATP-dependent DNA helicase RecG [Escherichia coli TA271]
          Length = 693

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 388/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            ++K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PVEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|330505643|ref|YP_004382512.1| ATP-dependent DNA helicase RecG [Pseudomonas mendocina NK-01]
 gi|328919929|gb|AEB60760.1| ATP-dependent DNA helicase RecG [Pseudomonas mendocina NK-01]
          Length = 691

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 255/701 (36%), Positives = 398/701 (56%), Gaps = 25/701 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           ++ L A P++  +GVG   +  L+K+            D+LF+ P  + DR     I  +
Sbjct: 1   MSELSAVPVTALKGVGAALAEKLAKV------GLENLQDVLFHLPLRYQDRTRITPIGAL 54

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
              +   + G ++  +   + +RR   + L DG+G ++L FF+      K     G  + 
Sbjct: 55  RPGQDAVVEGIVAG-ADVVMGRRRSLLVRLQDGSGTLSLRFFHFSQAQ-KEGLKRGTALR 112

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             G+++     + + HP Y   +  +       +  +Y    GL+    +++  +AL+RL
Sbjct: 113 CYGEVRPGATGLEIYHPEYRAQSGDEPAPVEQSLTPIYPTTEGLTQQRLRQLSQQALARL 172

Query: 183 PV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAG 236
               LP+W+  +L +      + EA   +H P    D E        A+ RLA++ELL  
Sbjct: 173 GPRSLPDWLPDELARDYRLAPLDEAIRYLHRPPPDADVEELAEGRHWAQHRLAFEELLTH 232

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q++L  +R+Q + +    +    K+ Q+ L N+ F+PT +Q+    +I  D++Q   MLR
Sbjct: 233 QLSLQRLREQVRAQQAPALPPAKKLPQQYLANLGFAPTGAQQRVGAEIAYDLAQSEPMLR 292

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVG+GKT+VA +A   A+EAG Q  +MAP  ILA+QH+    K+     + V  + 
Sbjct: 293 LVQGDVGAGKTVVAALAALQALEAGYQVALMAPTEILAEQHFLNFSKWLAPLGLEVAWLA 352

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G +    R  AL++IA G   +++GTHALFQD +++ +L LVI+DEQHRFGVQQRL L Q
Sbjct: 353 GKLKGKARAAALDQIAAGCP-MVVGTHALFQDEVKFKRLALVIIDEQHRFGVQQRLALRQ 411

Query: 417 K----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           K      +PH L+MTATPIPRTL +++  D+D S + E P GR P+ T++I  +R  EV+
Sbjct: 412 KGIDGRLSPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRIEVV 471

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531
           ER++    +G++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K 
Sbjct: 472 ERVRNACQQGRQAYWVCTLIEESEELTCQAAETSYEELSAALGELRVGLIHGRMKPAEKA 531

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           +VM+ FK G+ +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S 
Sbjct: 532 AVMEEFKQGSLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASH 591

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C+LLYH PLS+    RL++++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A    
Sbjct: 592 CVLLYHAPLSQLGRERLAIMRETTDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMR 651

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
              LL   R  A+ +L   P   +   +  R L +  QY +
Sbjct: 652 DADLLPAVRDAAQALLEHWPQHVAPLLE--RWLRHGQQYGQ 690


>gi|283787716|ref|YP_003367581.1| ATP-dependent DNA helicase [Citrobacter rodentium ICC168]
 gi|282951170|emb|CBG90862.1| ATP-dependent DNA helicase [Citrobacter rodentium ICC168]
          Length = 693

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 256/709 (36%), Positives = 390/709 (55%), Gaps = 32/709 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  G+G   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGIGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     + DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNVTFGGRRMMTCQIGDGSGILTMRFFNFSAAM-KNSLAAG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIV 176
           R++   G+ K+ K    M+HP Y      D++ P ++     VY    G+     +K+  
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRIQ--GDLSTPALQETLTPVYPTTEGIKQATLRKLTD 168

Query: 177 EALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAY 230
           +AL  +    + E +  +L   +   S+ EA   +H P       D E    PA+ RL  
Sbjct: 169 QALDLMDTCAIAELLPPEL--SQGMMSLPEALRTLHRPPPTLKLSDLETGQHPAQRRLIL 226

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           +ELLA  +++L +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+ 
Sbjct: 227 EELLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLASLPFKPTGAQARVVAEIERDMAL 286

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++     +
Sbjct: 287 DVPMMRLVQGDVGSGKTLVAALAALRAIAHGRQVALMAPTELLAEQHANNFRQWFAPLGV 346

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V  + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV Q
Sbjct: 347 EVGWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQ 406

Query: 411 RLKLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           RL L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  
Sbjct: 407 RLALWEKGEQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDT 466

Query: 467 RIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524
           R  ++I+R++   + EG++AYW+C  IEE      ++    +  L       ++ ++HGR
Sbjct: 467 RRSDIIDRVRNACIQEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNVGLVHGR 526

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVG
Sbjct: 527 MKPAEKQAVMAAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVG 586

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RG   S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F
Sbjct: 587 RGAVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEF 646

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            +A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 647 KVADLLRDQAIIPEVQRIARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|183597036|ref|ZP_02958529.1| hypothetical protein PROSTU_00271 [Providencia stuartii ATCC 25827]
 gi|188023695|gb|EDU61735.1| hypothetical protein PROSTU_00271 [Providencia stuartii ATCC 25827]
          Length = 693

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 256/707 (36%), Positives = 389/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +   L+T  GVG   S  LSKI            DLL + P  + D     +
Sbjct: 1   MNSGLLDTI--SLTTLHGVGASQSEKLSKI------GLNTVQDLLLHLPLRYEDHTRLYQ 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      TI G + Q       ++R    L+ DGTG +TL FF     M KN   EG
Sbjct: 53  IRDLLPGTTATIVGEVLQTKVV-FGRKRMMTCLITDGTGNLTLRFFNFSAAM-KNSLAEG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R +   G++++      ++HP Y              +  VY    G+     +K+I +A
Sbjct: 111 RHVIAYGEVRRGNTGPEIIHPEYKVSQDTSNISLQENLTPVYPTTEGVRQATLRKLIEQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDE 232
           L  L    + E + ++L   +   S+ +A  ++H P          +   PA++RL  +E
Sbjct: 171 LKLLEGGQIKELLPEEL--SRGLISLPDAIRLLHTPPPDVALSELEKGQHPAQKRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P+ + G++  + L ++PF+PT +Q   + +I QD+ +  
Sbjct: 229 LLAHHLSMLAIRAGHQRLYAQPMVITGQLKSQFLASLPFTPTHAQIRVVGEIEQDLIKDA 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A  +A+E G Q  +MAP  ILA+QH    K + +   I V
Sbjct: 289 PMMRLIQGDVGSGKTLVAALAALSAIENGKQVALMAPTEILAEQHANNFKLWFEPLGINV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R +  E IA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKAREQQQEAIAKGEVSMVVGTHALFQEHVTFKALGLVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALREKGEQQGFHPHQLIMTATPIPRTLAMTAYADMDTSIIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++IER++   + EG++AYW+C  I++      ++     + L        + ++HGRM 
Sbjct: 469 KDIIERVRQACIDEGRQAYWVCTLIDDSDVLEAQAAQATSDELALALPELKVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+S+M +FKN   +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQSIMAAFKNNEIQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PL+  +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G   F +
Sbjct: 589 AVASHCVLLYKTPLTHTAKQRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNVDFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A       +L   ++ A+HI    P+  + +    R L    QY++A
Sbjct: 649 ADLLRDQYMLPEVQRIARHIQQNYPE--NAKLIIERWLPEREQYSQA 693


>gi|146309411|ref|YP_001189876.1| ATP-dependent DNA helicase RecG [Pseudomonas mendocina ymp]
 gi|145577612|gb|ABP87144.1| ATP-dependent DNA helicase RecG [Pseudomonas mendocina ymp]
          Length = 691

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 258/701 (36%), Positives = 395/701 (56%), Gaps = 25/701 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           ++ L A  ++  +GVG   +  L+K+            D+LF+ P  + DR     I  +
Sbjct: 1   MSELAAVSVTALKGVGAALAEKLAKV------GLENLQDVLFHLPLRYQDRTRITPIGAL 54

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
              +   + G ++  +   + +RR   + L DG+G ++L FF+      K     G  + 
Sbjct: 55  RPGQDAVVEGIVAG-ADVVMGRRRSLLVRLQDGSGTLSLRFFHFSQAQ-KEGLKRGTALR 112

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             G+++     + + HP Y   +  +       +  +Y    GL+    +++  +AL+RL
Sbjct: 113 CYGEVRPGATGLEIYHPEYRAQSGDEPAPVEQSLTPIYPTTEGLTQQRLRQLSQQALARL 172

Query: 183 PV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAG 236
               LP+W+  +L +      + EA   +H P    D E        A+ RLA++ELL  
Sbjct: 173 GPRSLPDWLPDELARDYRLAPLDEAIRYLHRPPPDADLEELAEGRHWAQHRLAFEELLTH 232

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q++L  +R+Q + +    +    K+ Q+ L N+ F+PT +Q+    +I  D++Q   MLR
Sbjct: 233 QLSLQRLREQVRAQQAPALPPAQKLPQQYLANLGFAPTGAQQRVGAEIAYDLAQSEPMLR 292

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVG+GKT+VA +A   A+EAG Q  +MAP  ILA+QH+    K+     + V  + 
Sbjct: 293 LVQGDVGAGKTVVAALAALQALEAGYQVALMAPTEILAEQHFLNFSKWLAPLGLDVAWLA 352

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G +    R  ALE+IA G   +++GTHALFQD +++ +L LVI+DEQHRFGVQQRL L Q
Sbjct: 353 GKLKGKARASALEQIAAGCP-MVVGTHALFQDEVKFRRLALVIIDEQHRFGVQQRLALRQ 411

Query: 417 K----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           K       PH L+MTATPIPRTL +++  D+D S + E P GR P+ T++I  +R  EVI
Sbjct: 412 KGIDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRIEVI 471

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531
           ER++    +G++AYW+C  IEE +E   ++    F  L        + +IHGRM   +K 
Sbjct: 472 ERVRNACQQGRQAYWVCTLIEESEELTCQAAETSFEELSAALGELRVGLIHGRMKPAEKA 531

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           +VMD FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S 
Sbjct: 532 AVMDEFKQGHLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASH 591

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C+LLYH PLS+    RL++++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A    
Sbjct: 592 CVLLYHAPLSQLGRERLAIMRETTDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMR 651

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
              LL   R  A+ +L   P   +   +  R L +  QY +
Sbjct: 652 DADLLPAVRDAAQALLEHWPQHVAPLLE--RWLHHGQQYGQ 690


>gi|165977264|ref|YP_001652857.1| ATP-dependent DNA helicase RecG [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165877365|gb|ABY70413.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 693

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 268/696 (38%), Positives = 387/696 (55%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I            DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTALSGVGAAIAEKLSRI------GINNVQDLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            +    + HP Y  I +N        +  +YS   GL  +  +K+  +AL+ L  +   E
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALALLDKIKVGE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
            +  +    K   S+  A  ++H P  +   E       PA++RL ++ELLA  +A+  +
Sbjct: 182 LLPDEYNPHK--YSLKGALQLLHRPPPSVSAEQLEKGEHPAQKRLIFEELLAHNLAMQQV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R    +    P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDVG
Sbjct: 240 RVGVNQLTATPLRYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   LE I +G+  +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDGI 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+    
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAAC 479

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+ +M  F
Sbjct: 480 KNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 540 KAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++ 
Sbjct: 600 PPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           + +  AK I+ Q+P L   +    R L    +Y+ A
Sbjct: 660 LVQNYAKQIIQQNPPLA--KALIRRWLGERTEYSNA 693


>gi|170681314|ref|YP_001745952.1| ATP-dependent DNA helicase RecG [Escherichia coli SMS-3-5]
 gi|170519032|gb|ACB17210.1| ATP-dependent DNA helicase RecG [Escherichia coli SMS-3-5]
          Length = 693

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q     +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVAAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DK++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PADKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|293463976|ref|ZP_06664390.1| ATP-dependent DNA helicase RecG [Escherichia coli B088]
 gi|291321608|gb|EFE61044.1| ATP-dependent DNA helicase RecG [Escherichia coli B088]
 gi|323944105|gb|EGB40185.1| ATP-dependent DNA helicase RecG [Escherichia coli H120]
          Length = 693

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIEHDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            ++K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PVEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|307251432|ref|ZP_07533346.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306856516|gb|EFM88658.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 693

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 268/696 (38%), Positives = 386/696 (55%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I            DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTALSGVGAAIAEKLSRI------GINNVQDLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            +    + HP Y  I +N        +  +YS   GL  +  +K+  +AL+ L  +   E
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALALLDKIKVGE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
            +  +    K   S+  A  ++H P  +   E       PA++RL ++ELLA  +A+  +
Sbjct: 182 LLPDEYNPHK--YSLKGALQLLHRPPPSVSAEQLEKGEHPAQKRLIFEELLAHNLAMQQV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R    +    P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDVG
Sbjct: 240 RVGVNQLTATPLRYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   LE I +G+  +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDGI 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+    
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAAC 479

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+ +M  F
Sbjct: 480 KNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 540 KAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++ 
Sbjct: 600 PPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           + +  AK I+ Q+P L        R L    +Y+ A
Sbjct: 660 LVQNYAKQIIQQNPPLA--EALIRRWLGERTEYSNA 693


>gi|157155919|ref|YP_001465133.1| ATP-dependent DNA helicase RecG [Escherichia coli E24377A]
 gi|157077949|gb|ABV17657.1| ATP-dependent DNA helicase RecG [Escherichia coli E24377A]
          Length = 693

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 388/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDTV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|300939292|ref|ZP_07153966.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 21-1]
 gi|300455799|gb|EFK19292.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 21-1]
          Length = 693

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q     +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVAAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DK++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PADKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|298505437|gb|ADI84160.1| ATP-dependent DNA helicase RecG [Geobacter sulfurreducens KN400]
          Length = 767

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 239/709 (33%), Positives = 382/709 (53%), Gaps = 25/709 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG K +  L++             D L+  P+ + DR     ++ +    
Sbjct: 65  LETPMQFIKGVGPKMAEILAR------KGIVTVEDALYLLPNRYEDRRQVVPMNRLRPGE 118

Query: 69  IVTITGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
                G +        +  RR ++++  D +G ++  +F      ++  +  GR+   TG
Sbjct: 119 TCVFAGEVVSADVVTTKGGRRFFEVMARDASGVMSFKWFNYHAAFMRKAWQPGRRGIFTG 178

Query: 128 KIKKLKNRIIMVHPHYIFHNSQD----------VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           ++ +   +  + HP   +    +          V F  +  VY L  GL+    +K++ E
Sbjct: 179 QVTQYGLQREVHHPDVDWLAEGETVEAAMARDPVGFGRLVPVYPLTEGLNQKALRKVMKE 238

Query: 178 ALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDE 232
            + R  P +   +   ++++++   +AEA   +H P    D     E   PA   L +DE
Sbjct: 239 VVDRFAPCVESALPARVIRERALLPLAEALGAVHFPAADADPRALEEGRDPAHRTLVFDE 298

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
               ++ L L R+    E GI  +V     + +L+ +PF+ T++Q   + +I  DM   +
Sbjct: 299 FFFLELGLALKRRGVTLEPGIAFSVNHTYTKPLLKLLPFALTEAQRRVLAEIKADMMAPH 358

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++QGDVG GKTLVAL+A   AVE G Q  IMAP  ILA+QHY  I ++ +   + V
Sbjct: 359 PMHRLVQGDVGCGKTLVALLAALVAVENGYQVAIMAPTEILAEQHYLNIHRWCEQLGVTV 418

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++T ++    +  ALER+A G+  I+IGTHA+ QD +++++L L IVDEQHRFGV QR 
Sbjct: 419 ALLTSSLKGKAKAGALERVARGEVQIVIGTHAVIQDKVEFHRLGLGIVDEQHRFGVLQRG 478

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L +K   P +L+MTATPIPRTL +T  GD+ +S I E P GR P++T I   +R  +V 
Sbjct: 479 LLRKKGENPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPVETKICTDSRRRQVY 538

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDK 530
             ++  ++ G +AY I P +EE ++S  ++  +    L         + ++HGRM   +K
Sbjct: 539 GIIRDEVAAGHQAYVIYPLVEESEKSELKAATQMAEHLANDVFPDLRLGVLHGRMKPEEK 598

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E+VM SFK     +L++TTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRVGRG   S
Sbjct: 599 EAVMRSFKGREIDILVSTTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVGRGSATS 658

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            CIL+    LS +   RL V+++T DGF IAE DL+ R  G+ LG +Q+G+P F +A   
Sbjct: 659 RCILMASDRLSDDGVKRLRVMESTTDGFRIAEADLEIRGPGDFLGTRQAGIPDFRVANIL 718

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
               +LE AR +A  +  +DP+L +   + +R  L   ++    +    
Sbjct: 719 RDGRILEEARAEAFELAERDPELRAPGHEPLREELAR-RWGGRLELAGV 766


>gi|237807017|ref|YP_002891457.1| ATP-dependent DNA helicase RecG [Tolumonas auensis DSM 9187]
 gi|237499278|gb|ACQ91871.1| ATP-dependent DNA helicase RecG [Tolumonas auensis DSM 9187]
          Length = 689

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 261/695 (37%), Positives = 380/695 (54%), Gaps = 25/695 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+S  +GVG K +  L+ +            DLLF+ P  + DR     I+E+S +   T
Sbjct: 7   PVSMLKGVGSKLAEKLAHLR------LHTVQDLLFHLPLRYEDRTRLYPIAELSADHACT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
             G I      Q  KRR     ++DG G +TL FF+      KN    GR+I   G+IK+
Sbjct: 61  TEGVIQSC-DIQQGKRRMLLCRISDGNGSLTLRFFHFTAGQ-KNALAIGRRIRCFGEIKR 118

Query: 132 LKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             +   +VHP Y   +          +  VY    GL     + +  +AL  L    + E
Sbjct: 119 GLHGFEIVHPEYKLLDDDAPLDTDATLTPVYPTTEGLRQASLRNLTDQALQLLKENGVKE 178

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            + + L  ++   S A    ++H P              PA++RLA +EL+A  + +L +
Sbjct: 179 LLPEGLYPRQLSLSDAL--LLLHRPPPDISLAQLENGQHPAQQRLALEELIAHHLTVLQL 236

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   ++    P+  +  + +++L ++PF PT +Q+  + +I  D++  + M+R++QGDVG
Sbjct: 237 RYSVQQHQARPLATDWSLCEQLLAHLPFKPTGAQQRVVSEISHDLTLPHPMMRLVQGDVG 296

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A    +  GGQ V+MAP  +LA+QH      +     I    + G +    
Sbjct: 297 SGKTLVAALAALQVIAHGGQVVLMAPTELLAEQHANNFSNWLTPLGIETGWLAGKIKGKA 356

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R K LE I  GQ  +++GTHA+FQD +++ +L+LVIVDEQHRFGV QRL L +K      
Sbjct: 357 REKQLEAIRSGQVKMVVGTHAVFQDQVEFQQLLLVIVDEQHRFGVHQRLALREKGAQDGV 416

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV +P  R + VIER++   
Sbjct: 417 YPHQLIMTATPIPRTLAMTIYADLDTSIIDELPPGRTPITTVALPDTRRETVIERVRQAC 476

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            EG++AYW+C  IEE +    ++       L        I ++HGRM   +K+ VM  FK
Sbjct: 477 LEGRQAYWVCTLIEESEVLECQAAENTAEELQLLLPELHIGLVHGRMKPAEKQRVMQEFK 536

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH 
Sbjct: 537 EGILHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHA 596

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG KQ+G+    IA      +L+  
Sbjct: 597 PLSKTAQQRLGVLRDSNDGFVIAQKDLELRGPGEMLGAKQTGLADLKIADLIRDQALIPQ 656

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            ++ A+ I  Q P   +   +  R       Y++A
Sbjct: 657 VQQLAQRIFQQYPACVTPLIR--RWFGERDDYSQA 689


>gi|331675129|ref|ZP_08375886.1| ATP-dependent DNA helicase RecG [Escherichia coli TA280]
 gi|331068038|gb|EGI39436.1| ATP-dependent DNA helicase RecG [Escherichia coli TA280]
          Length = 704

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 258/707 (36%), Positives = 384/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +   LS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 12  MKGRLLDAVL--LSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 63

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 64  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 121

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 122 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 181

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 182 LDLLATCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 239

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 240 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDA 299

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 300 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 359

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 360 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 419

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 420 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 479

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 480 TDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 539

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 540 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 599

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 600 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 659

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 660 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 704


>gi|330957275|gb|EGH57535.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 691

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 251/694 (36%), Positives = 394/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+++            D+LF+ P  + DR     I  +   +   
Sbjct: 8   SVTALKGVGEAMAEKLARV------GLENLQDVLFHLPLRYQDRTRIVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+ ++L +      + +A   +H+P    D +        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGDVG
Sbjct: 240 RESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +    
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K      
Sbjct: 360 RVASLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAEKAAIMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 QGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPQHVSPL--LDRWLRHGQQYGQ 690


>gi|303251147|ref|ZP_07337331.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307253511|ref|ZP_07535381.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649998|gb|EFL80170.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306859012|gb|EFM91055.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 693

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 268/696 (38%), Positives = 386/696 (55%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I            DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTALSGVGAAIAEKLSRI------GINNVQDLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLAAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            +    + HP Y  I +N        +  +YS   GL  +  +K+  +AL+ L  +   E
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALALLDKIKVGE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
            +  +    K   S+ EA  ++H P      +       PA++RL ++ELLA  +A+  +
Sbjct: 182 LLPDEYNPHK--YSLKEALQLLHRPPPDISAKQLEKGDHPAQKRLIFEELLAHNLAMQQV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R    +    P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDVG
Sbjct: 240 RVGVNQLAAAPLRYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   LE I +G+  +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDGI 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+    
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAAC 479

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+ +M  F
Sbjct: 480 KNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 540 KAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++ 
Sbjct: 600 PPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           + +  AK I+ Q+P L        R L    +Y+ A
Sbjct: 660 LVQNYAKQIIQQNPPLA--EALIRRWLGERTEYSNA 693


>gi|320179990|gb|EFW54932.1| ATP-dependent DNA helicase RecG [Shigella boydii ATCC 9905]
          Length = 693

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 258/707 (36%), Positives = 383/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I  DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIEHDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIVHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA  Q  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASSQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACMTEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|325275147|ref|ZP_08141120.1| ATP-dependent DNA helicase RecG [Pseudomonas sp. TJI-51]
 gi|324099719|gb|EGB97592.1| ATP-dependent DNA helicase RecG [Pseudomonas sp. TJI-51]
          Length = 692

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 251/695 (36%), Positives = 391/695 (56%), Gaps = 25/695 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG+  +  L+K+            D+LF+ P  + DR     I ++   +   
Sbjct: 8   PVTVLKGVGEAMAEKLAKV------GLENLQDVLFHLPLRYQDRTRVVPIGQLRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DG+G ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVTMGKRRSLVVRLGDGSGVLSLRFYHFSNAQ-KEGLKRGTHLRCYGEARP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPV--LP 186
             + + + HP Y   N  +   P+   +  +Y    GL+    +++  ++LS L    LP
Sbjct: 120 GASGLEIYHPEYRALNGDEPPPPVDQTLTPIYPSTEGLTQQRLRQLCQQSLSLLGPRSLP 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLL 242
           +W+  +L +      + +A   +HNP    D E        A+ RLA++ELL  Q++   
Sbjct: 180 DWLPDELARDYQLAPLDDAIRYLHNPPADADVEELALGHHWAQHRLAFEELLTHQLSQQR 239

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  +      +    ++  + L N+ F PT +Q+    +I  D+SQ   M+R++QGDV
Sbjct: 240 LRESLRSLRAPVLPKATRLPAQYLANLGFQPTGAQQRVANEIAYDLSQHEPMMRLVQGDV 299

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+VA +A   A+EAG Q  +MAP  ILA+QHY   K++ +   + V  + G +   
Sbjct: 300 GAGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGLEVAWLAGKLKGK 359

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419
            R  +LE+IA+G   +++GTHALFQD +++  L L I+DEQHRFGVQQRL L +K     
Sbjct: 360 ARAASLEQIANGAP-MVVGTHALFQDEVKFKHLALAIIDEQHRFGVQQRLALRKKGVAGE 418

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++  
Sbjct: 419 LCPHQLIMTATPIPRTLAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAA 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K  +M  F
Sbjct: 479 CAEGRQAYWVCTLIEESEELTCQAAESTYEELGSALGELRVGLIHGRMKPAEKAEIMAEF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYH
Sbjct: 539 KAGNLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS+    RL +++ T DGF+IAE+DL  R  GE+LG +Q+G+ +F +A       LL 
Sbjct: 599 PPLSQIGRERLGIMRETNDGFIIAEKDLALRGPGEMLGTRQTGLLQFKVADLMRDADLLP 658

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
             R  A+ ++ + P+  S      R L +  QY +
Sbjct: 659 AVRDAAQALIARWPEHVSPL--LDRWLRHGQQYGQ 691


>gi|164688647|ref|ZP_02212675.1| hypothetical protein CLOBAR_02292 [Clostridium bartlettii DSM
           16795]
 gi|164603060|gb|EDQ96525.1| hypothetical protein CLOBAR_02292 [Clostridium bartlettii DSM
           16795]
          Length = 686

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 236/682 (34%), Positives = 387/682 (56%), Gaps = 18/682 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +N L   +   +G+G K +  L+K+      N     DLL+Y P S+ DR    KI ++ 
Sbjct: 1   MNSLDKNIQFVKGIGPKKASKLNKL------NIFTIKDLLYYFPRSYEDRSNIKKIWQLE 54

Query: 66  EERIVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            +      G IS+  S + + + +  K  L D TG + ++FF +  + L  VF +G  + 
Sbjct: 55  HDEKACTKGIISEVKSHEAKNKIKVTKFTLRDETGFLNVVFFNQ--DYLTKVFKKGDSVI 112

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           V GKIK+    + M  P      +   +   +  +Y L  G++       I    +   V
Sbjct: 113 VYGKIKREGGFLEMNSPQIEHFTNAQTSTGKLIPIYPLTYGVTNKDIINTIKNIYTNEKV 172

Query: 185 -LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + E++ KD++ K    SI  A   +H P+   D +    A  R+ ++E L  QI L   
Sbjct: 173 SIQEYLPKDIINKYKLCSIDFAVKNLHMPQ---DKQSLKIALYRMIFEEFLILQIGLFYF 229

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +       GI    + +    I++++PF+ T +Q  A+ +++ DM  +N M R++QGDVG
Sbjct: 230 KSGIDNSEGIKFEKK-EKLNDIIKSLPFNLTNAQSRALNEVIDDMVSENMMNRLVQGDVG 288

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA++ +A +V  G Q  +MAP  ILA+QHYE + +      I ++++ G++ +  
Sbjct: 289 SGKTIVAVLVLALSVLNGYQGALMAPTEILARQHYESLTQTLAPFDINIDLLVGSLTKKQ 348

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           + K LE+I + +  I+IGTHAL +D++++  L +V+ DEQHRFGV+QR KL+ K   P +
Sbjct: 349 KEKVLEKIKNHETDILIGTHALIEDNVEFDNLGVVVTDEQHRFGVRQRAKLSTKGNNPDI 408

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEG 482
           L+MTATPIPRTL L   GD+DIS I E P GR+PI T      + D +    ++  + +G
Sbjct: 409 LVMTATPIPRTLALILYGDLDISIIDELPPGRQPIDTRAFESKKRDFIYSNFVRDEIEKG 468

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNG 540
           ++ Y +CP +EE +    ++  +  + L E + S  ++ ++HG+M    K+ +M+ FKN 
Sbjct: 469 RQVYIVCPLVEESEAIEAKAAEDLRDELKEKYFSDLNVEVLHGKMKPSLKDKIMEDFKNN 528

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L++TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG   S CIL+Y    
Sbjct: 529 KIQILVSTTVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGSHKSHCILIYSSK- 587

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +     R+ +++ T DGF I+E+DL+ R  GE  G +Q G+P+  +A    H  +L++A+
Sbjct: 588 TNVCKERMEIMEETNDGFKISEKDLEIRGPGEFFGTRQHGIPELKVANIFKHIKILKLAQ 647

Query: 661 KDAKHILTQDPDLTSVRGQSIR 682
           +++K IL QD +L       ++
Sbjct: 648 EESKFILKQDRNLEKSEHILLK 669


>gi|307128794|ref|YP_003880810.1| ATP-dependent DNA helicase [Dickeya dadantii 3937]
 gi|306526323|gb|ADM96253.1| ATP-dependent DNA helicase [Dickeya dadantii 3937]
          Length = 693

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 251/697 (36%), Positives = 385/697 (55%), Gaps = 26/697 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            PLST  GVG   +  L+++            DLL + P  + DR +   I+++      
Sbjct: 9   QPLSTLAGVGASQAEKLARL------GLETVQDLLLHLPLRYEDRTHLYLINDVLPGMYA 62

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           T+ G + + S     +RR     ++DG+G +TL FF     M KN    G+++   G+++
Sbjct: 63  TVEGDVLR-SDITFGRRRMLTCQISDGSGMLTLRFFNFNAAM-KNSLSPGQRVLAYGEVR 120

Query: 131 KLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLP 186
           + K    M+HP Y              +  VY    G+     +K+  +AL  L    + 
Sbjct: 121 RGKLGGEMIHPEYRVQGESATVELQETLTPVYPTTEGIRQATLRKLTDQALELLNTHPID 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           E + +++       S+ +A   +H P          +   PA++RL  +ELLA  +++L 
Sbjct: 181 ELLPQEMR--HGLISLPDALRTLHRPPPDVQLAELEQGKHPAQQRLVMEELLAHHLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   + +  +  + Q++L  +PFSPT +Q+  + +I QDM++   M+R++QGDV
Sbjct: 239 VRAGAQRHRALALGPKDNLKQQLLAALPFSPTGAQQRVVAEIEQDMNKPFPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V  + G     
Sbjct: 299 GSGKTLVAALAALQAIAHGKQVALMAPTELLAEQHAANFRRWFEPLGVEVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419
            R+   E IA GQ  +++GTHA+FQ  +Q+  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARQAQQEAIASGQVSMVVGTHAIFQQQVQFNGLALVIIDEQHRFGVHQRLALWEKGEEQG 418

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-V 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R D++I+R++  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRDDIIQRVRNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L EG++AYW+C  IEE +    ++       L       +I ++HGRM   +K++VM +
Sbjct: 479 CLQEGRQAYWVCTLIEESELLEAQAAEATCQELKAALPDLTIGLVHGRMKAQEKQAVMAA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK     LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKTNQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G   F +A      +L+
Sbjct: 599 KSPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAAFRVADLLRDQALI 658

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
              ++ ++H+    P+    R    R L    +Y  A
Sbjct: 659 PQVQRVSRHLHEHYPE--HARALIDRWLPERTRYTNA 693


>gi|260447329|gb|ACX37751.1| ATP-dependent DNA helicase RecG [Escherichia coli DH1]
 gi|315138234|dbj|BAJ45393.1| ATP-dependent DNA helicase RecG [Escherichia coli DH1]
          Length = 693

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 384/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R     ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVHHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK    RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTVQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|323173261|gb|EFZ58890.1| ATP-dependent DNA helicase RecG [Escherichia coli LT-68]
          Length = 693

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MTGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYTDLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|307262320|ref|ZP_07543968.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306867983|gb|EFM99811.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 693

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 268/696 (38%), Positives = 387/696 (55%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I            DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTALSGVGAAIAEKLSRI------GINNVQDLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQLTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            +    + HP Y  I +N        +  +YS   GL  +  +K+  +AL+ L  +   E
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALALLDKIKVGE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
            +  +    K   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  +
Sbjct: 182 LLPDEYNPHK--YSLKEALQLLHRPPPDISAEQLEKGDHPAQKRLIFEELLAHNLAMQQV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R    +    P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDVG
Sbjct: 240 RVGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   LE I +G+  +IIGTHALFQ+ ++++ L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RTAQLEAIKNGEVQMIIGTHALFQERVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDGI 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+    
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAAC 479

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+++M  F
Sbjct: 480 KNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQAIMAEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 540 KAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++ 
Sbjct: 600 PPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           + +  AK I+ Q+P L   +    R L    +Y+ A
Sbjct: 660 LVQNYAKQIIQQNPPLA--KALIRRWLGERTEYSNA 693


>gi|257481743|ref|ZP_05635784.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330890912|gb|EGH23573.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. mori str.
           301020]
          Length = 691

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 252/694 (36%), Positives = 393/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+++            D+LF+ P  + DR     I  +   +   
Sbjct: 8   SVTALKGVGEAMAEKLARV------GLETLQDVLFHLPLRYQDRTRVVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+  +L +      + +A   +H+P    D E        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGDVG
Sbjct: 240 RESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +    
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K      
Sbjct: 360 RATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAEKAAIMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 QGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPQHVSPL--LDRWLRHGQQYGQ 690


>gi|84386372|ref|ZP_00989400.1| ATP-dependent DNA helicase RecG [Vibrio splendidus 12B01]
 gi|84378796|gb|EAP95651.1| ATP-dependent DNA helicase RecG [Vibrio splendidus 12B01]
          Length = 692

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 266/696 (38%), Positives = 390/696 (56%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLNSLSGVGAKVAEKLEKV------GLNNVQDLLFHLPLRYEDRTRIYPIVKLHAGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF     M KN F EG+++   G+IK+
Sbjct: 63  VQGKVMHVDTI-FGKRKMLAVKISDGNGTITLRFFNFTAGM-KNNFAEGKQVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F     Q      +  VY    GL     + +  +AL  +    + E
Sbjct: 121 GNMGLEIVHPDYKFFAPRQQPDVEANLTPVYPTTEGLRQVTLRNLTDQALELIDKAAVNE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            +   L   +   ++A+A + IH P    D E       PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDHQ--ITLAQALHTIHRPPPGIDLELFDEGKHPAQLRLIMEELLAQNLSMLSV 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + +++  +P      +  K+L  +PFSPT +Q    K+I  D+ + + M+R++QGDVG
Sbjct: 239 RSKGQQDKAMPFPPVNTLKDKLLAQLPFSPTNAQVRVTKEIEADLEKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRALEHGQQVALMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   L RIA G+A +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL+L +K      
Sbjct: 359 RETELTRIASGEAQMVVGTHALFQEHVEFKNLGLVIIDEQHRFGVHQRLELREKGAKQGY 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER+K   
Sbjct: 419 YPHQLVMTATPIPRTLAMTAYADLETSIIDELPPGRTPIQTVAIPDTKRDDIVERVKNAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAADTAEDLQRKLPDVKIGLVHGRMKPAEKQAVMREF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 539 KENKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 SPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLIRDQRLIP 658

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             ++ A+HI    PD  + +    R L     Y++A
Sbjct: 659 EVQRIARHIHDSYPD--NAKAIINRWLGERDVYSKA 692


>gi|117918805|ref|YP_867997.1| ATP-dependent DNA helicase RecG [Shewanella sp. ANA-3]
 gi|117611137|gb|ABK46591.1| ATP-dependent DNA helicase RecG [Shewanella sp. ANA-3]
          Length = 696

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 257/696 (36%), Positives = 401/696 (57%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV K+ +  L+K+        T   DLLF+ P  + DR     I+ +      T
Sbjct: 13  PITDLKGVAKRVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGNYGT 66

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG ++L FF       +N    G  I   G+I++
Sbjct: 67  IEAEIQSTQIIQ-GRKRMLVCNVRDNTGSMSLRFFNFSMAQ-RNAMQNGLMIRAYGEIRR 124

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             ++  +VHP Y I +  +D++    +  +Y    GL    + K+  +AL  L    L E
Sbjct: 125 GNHQAEIVHPEYKIVYPGEDIHLSDTLTPIYPTTEGLKQASWIKLTEQALELLEDGGLTE 184

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLLM 243
            +  +L  + +  S+ +A   +H P       D E    PA++RL  +ELLA  +++L +
Sbjct: 185 LLPANL--QPNSMSLKQALQTLHRPHAGISQFDLELGQHPAQQRLVQEELLAHNLSMLRL 242

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++   +  + ++  G++    L ++PF PT +Q+  + +I +D++Q + M+R++QGDVG
Sbjct: 243 RQRSNLDAAVTMHASGQLLNPFLASLPFKPTGAQQRVVAEIGKDLAQPHPMMRLVQGDVG 302

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +    
Sbjct: 303 SGKTLVAALAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGKLKGKA 362

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R ++LE I  G A I+IGTHA+FQ  + + KL L+I+DEQHRFGV QR+ L +    +  
Sbjct: 363 RAQSLEDIESGAAQIVIGTHAIFQQQVTFNKLALIIIDEQHRFGVHQRMGLREKGINQGF 422

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R +EV+ER++  V
Sbjct: 423 HPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDSRRNEVLERVRNSV 482

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++ ++AYW+C  IEE +    ++  +    L +     SI ++HGRM   +K+ +M  F
Sbjct: 483 VTDKRQAYWVCTLIEESEVLECQAAEDTAEELRQALPELSIGLVHGRMKSAEKQKIMADF 542

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G+  LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 543 KAGSIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 602

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS+ +  RL+VL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA      +L+ 
Sbjct: 603 APLSQTASQRLNVLRQSNDGFVIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQALIP 662

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H+++Q P+  SV     R L +  QY +A
Sbjct: 663 HIQKLASHVMSQAPE--SVDAIIHRWLGHRQQYVQA 696


>gi|332288967|ref|YP_004419819.1| ATP-dependent DNA helicase RecG [Gallibacterium anatis UMN179]
 gi|330431863|gb|AEC16922.1| ATP-dependent DNA helicase RecG [Gallibacterium anatis UMN179]
          Length = 694

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 257/697 (36%), Positives = 392/697 (56%), Gaps = 28/697 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   S  LS++            DLLF+ P  + DR +   I ++  +   T
Sbjct: 11  PLTVLSGVGVAMSERLSRL------GIRSVQDLLFHFPLRYEDRTHITPIIDLRPDSYAT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q    Q  +R    + L+DG+ +I L FF     M KN F  G ++   G+I++
Sbjct: 65  IEG-IVQTCEVQFGRRPMLTVSLSDGSSKIMLRFFNFNAGM-KNSFSSGARVKAFGEIRR 122

Query: 132 LKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
            +    M HP Y    HN        +  +Y    GL    ++K+  +AL+ L    + E
Sbjct: 123 GRFMAEMHHPEYRIIHHNEPLTLDENLTPIYPSTEGLKQASWRKLTDQALALLDKATIKE 182

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
            +  +     S   +  A   +H P      E       PA++RLA++ELLA  +A+   
Sbjct: 183 LLPTEFNP--SGYDLKSAVQFLHRPPAGTLSEMLEKGEHPAQQRLAFEELLAHNLAMQKS 240

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++  ++   I +  +  I Q+ L  +PF+PTK+Q   +++I QD+ +   M+R++QGDVG
Sbjct: 241 KQDAQQNSAIALRYQSNIKQQFLATLPFTPTKAQLRVVEEIEQDLQRSQPMMRLIQGDVG 300

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVAL+A   A++   Q  IMAP  ILA+QH      + +   I V  + G +    
Sbjct: 301 SGKTLVALLASLVALDNQQQVAIMAPTEILAEQHLHNFSHWLEPFGIKVGWLAGKVKGKK 360

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R+++L +I  G+  ++IGTHALFQ+ ++++ L LVI+DEQHRFGV+QRL L +K      
Sbjct: 361 RQQSLAQIQCGETQVVIGTHALFQEQVEFHSLALVIIDEQHRFGVEQRLLLREKGAKNGL 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T   D+D+S I E P GR PIKTV I  +R DE+++R+    
Sbjct: 421 YPHQLIMTATPIPRTLAMTVYADLDVSVIDELPPGRTPIKTVAIAEDRRDELVQRVFHAC 480

Query: 480 S-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSF 537
           + + ++ YW+C  I+E +    ++       L +      I ++HGRM   +K+ VM  F
Sbjct: 481 TVDKRQVYWVCTLIDESEVLEAQAAEALAEDLRKALPMLKIGLVHGRMKPQEKQDVMAIF 540

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   +L+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG+  S C+LLY 
Sbjct: 541 KAGEIDVLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGQIESFCVLLYK 600

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PL K S  RL +++++ DGF+IAE+DL+ R  GE+LG+KQ+G+ +F +A    +  LL 
Sbjct: 601 APLGKISRQRLDIMRSSNDGFVIAEKDLEIRGPGEVLGVKQTGVAEFKVANLVRNRRLLP 660

Query: 658 IARKDAKHILT-QDPDLTSVRGQSIRILLYLYQYNEA 693
             ++ A  ++    P++  +     R L    +Y+ A
Sbjct: 661 AVQRCANQLMQINSPNIEQLIH---RWLDQKIEYSNA 694


>gi|15833781|ref|NP_312554.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           Sakai]
 gi|82546079|ref|YP_410026.1| ATP-dependent DNA helicase RecG [Shigella boydii Sb227]
 gi|161367493|ref|NP_290232.2| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 EDL933]
 gi|168748697|ref|ZP_02773719.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753477|ref|ZP_02778484.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4401]
 gi|168759773|ref|ZP_02784780.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766073|ref|ZP_02791080.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4486]
 gi|168772379|ref|ZP_02797386.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4196]
 gi|168779808|ref|ZP_02804815.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785529|ref|ZP_02810536.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC869]
 gi|168798622|ref|ZP_02823629.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC508]
 gi|195936213|ref|ZP_03081595.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809627|ref|ZP_03251964.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814424|ref|ZP_03255753.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820291|ref|ZP_03260611.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397244|ref|YP_002273132.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325846|ref|ZP_03441930.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795607|ref|YP_003080444.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224165|ref|ZP_05938446.1| ATP-dependent DNA helicase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254775|ref|ZP_05947308.1| ATP-dependent DNA helicase [Escherichia coli O157:H7 str. FRIK966]
 gi|291285023|ref|YP_003501841.1| ATP-dependent DNA helicase recG [Escherichia coli O55:H7 str.
           CB9615]
 gi|20139447|sp|Q8XD86|RECG_ECO57 RecName: Full=ATP-dependent DNA helicase recG
 gi|13364002|dbj|BAB37950.1| DNA helicase RecG [Escherichia coli O157:H7 str. Sakai]
 gi|81247490|gb|ABB68198.1| DNA helicase [Shigella boydii Sb227]
 gi|187771588|gb|EDU35432.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016894|gb|EDU55016.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4113]
 gi|189002582|gb|EDU71568.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358845|gb|EDU77264.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364763|gb|EDU83182.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369873|gb|EDU88289.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374240|gb|EDU92656.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC869]
 gi|189378859|gb|EDU97275.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC508]
 gi|208729428|gb|EDZ79029.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735701|gb|EDZ84388.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740414|gb|EDZ88096.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158644|gb|ACI36077.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC4115]
 gi|209754518|gb|ACI75566.1| DNA helicase RecG [Escherichia coli]
 gi|209754520|gb|ACI75567.1| DNA helicase RecG [Escherichia coli]
 gi|209754522|gb|ACI75568.1| DNA helicase RecG [Escherichia coli]
 gi|209754524|gb|ACI75569.1| DNA helicase RecG [Escherichia coli]
 gi|209754526|gb|ACI75570.1| DNA helicase RecG [Escherichia coli]
 gi|217322067|gb|EEC30491.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           TW14588]
 gi|254595007|gb|ACT74368.1| ATP-dependent DNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|290764896|gb|ADD58857.1| ATP-dependent DNA helicase recG [Escherichia coli O55:H7 str.
           CB9615]
 gi|320177350|gb|EFW52352.1| ATP-dependent DNA helicase RecG [Shigella dysenteriae CDC 74-1112]
 gi|320185702|gb|EFW60460.1| ATP-dependent DNA helicase RecG [Shigella flexneri CDC 796-83]
 gi|320191295|gb|EFW65945.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639559|gb|EFX09167.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           G5101]
 gi|320644998|gb|EFX14028.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H- str.
           493-89]
 gi|320650265|gb|EFX18754.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H- str. H
           2687]
 gi|320655617|gb|EFX23545.1| ATP-dependent DNA helicase RecG [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320666365|gb|EFX33364.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326337348|gb|EGD61183.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           1044]
 gi|326339846|gb|EGD63653.1| ATP-dependent DNA helicase RecG [Escherichia coli O157:H7 str.
           1125]
 gi|332089455|gb|EGI94559.1| ATP-dependent DNA helicase RecG [Shigella boydii 3594-74]
          Length = 693

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MTGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|46143481|ref|ZP_00135158.2| COG1200: RecG-like helicase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126209289|ref|YP_001054514.1| ATP-dependent DNA helicase RecG [Actinobacillus pleuropneumoniae
           L20]
 gi|126098081|gb|ABN74909.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 693

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 268/696 (38%), Positives = 386/696 (55%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I            DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTALSGVGAAIAEKLSRI------GINNVQDLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQVTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            +    + HP Y  I +N        +  +YS   GL  +  +K+  +AL+ L  +   E
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSATEGLKQNSLRKLTEQALALLDKIKVGE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
            +  +    K   S+  A  ++H P  +   E       PA++RL ++ELLA  +A+  +
Sbjct: 182 LLPDEYNPHK--YSLKGALQLLHRPPPSVSAEQLEKGEHPAQKRLIFEELLAHNLAMQQV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R    +    P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDVG
Sbjct: 240 RVGVNQLTATPLRYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   LE I +G+  +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQHRFGVHQRLTLREKGAKDGI 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+    
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAAC 479

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+ +M  F
Sbjct: 480 KNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 540 KAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++ 
Sbjct: 600 PPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVANLMRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           + +  AK I+ Q+P L        R L    +Y+ A
Sbjct: 660 LVQNYAKQIIQQNPPLA--EALIRRWLGERTEYSNA 693


>gi|88705445|ref|ZP_01103156.1| ATP-dependent DNA helicase RecG [Congregibacter litoralis KT71]
 gi|88700535|gb|EAQ97643.1| ATP-dependent DNA helicase RecG [Congregibacter litoralis KT71]
          Length = 686

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 254/672 (37%), Positives = 382/672 (56%), Gaps = 19/672 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             L + RGVG K +  L +         +   DLLF+ P  + DR     I  + +   V
Sbjct: 7   QSLESLRGVGPKMAERLQR------YGISNVEDLLFHLPLRYQDRTQVTPIGALQDGAEV 60

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            I G ++  S     +RR   + L DGTG  TL FF+      KN   +G ++   G ++
Sbjct: 61  VIEGDVALVSVSGGGRRRSLIVKLQDGTGTATLRFFHFSQAQ-KNALQQGDRLRCFGTVR 119

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           +   +  M+HP Y        N   +  +Y    G+S   ++K+  +ALS L   P    
Sbjct: 120 RGAQQAEMIHPEYRRSIHISDNEESLTPIYPSTEGVSQGQWRKLSDQALSVLAKHP---P 176

Query: 191 KDLLQ-KKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRK 245
           ++LL  +++   ++ A   +H P    D     +   PA+ RLA +EL A Q+++  MR 
Sbjct: 177 EELLPVRENDYGLSSALRFLHRPPPEADQQALRDGRHPAQLRLALEELTAHQLSMREMRA 236

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + ++     +     ++Q  L+ +PF PT +Q   +++I  D++ +  MLR++QGDVGSG
Sbjct: 237 RSRERAAPVLRDSKALSQHFLKALPFEPTAAQLRVMEEITADLATEKPMLRLVQGDVGSG 296

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  A   A+ +G Q  +MAP  +LA+QH      +     I    + G++    R 
Sbjct: 297 KTVVAAAAALIAIASGYQVAVMAPTELLAEQHRRNFAGWFSPLNISQMWLAGSVKGQKRE 356

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK---ATAPH 422
           +AL  I  G+A ++IGTHALFQD +++  L LVIVDEQHRFGV QRL L++K   A   H
Sbjct: 357 QALAAIESGEASLVIGTHALFQDGVEFAHLGLVIVDEQHRFGVHQRLALSEKTGGAWRAH 416

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+MTATPIPRTL + +  D+D S I E P GR+P+ TV+I   R  E+IER+ +   EG
Sbjct: 417 QLIMTATPIPRTLSMVAYADLDCSIIDELPPGRQPVGTVLIDNQRRQEIIERVAIACREG 476

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++ YW+C  IE+      ++    F  L E     ++A++HGRM   +K++VM +FK G 
Sbjct: 477 RQVYWVCTLIEDSDTLQAQAAESSFAELAEALDGIAVAMVHGRMKAKEKDAVMSAFKAGH 536

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            +LL+ATTVIEVG+DV +A+++IIEN E  GLAQLHQLRGRVGRG   S C+LLY  PL 
Sbjct: 537 YQLLVATTVIEVGVDVPNATLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYQSPLG 596

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + S  RL V++ + DGF IAEEDL+QR  GE+LG +Q+G+ +F +A+   H+ LLE  ++
Sbjct: 597 QQSRARLQVMRESNDGFYIAEEDLRQRGPGEVLGTRQTGLMEFRVARLPEHEHLLEEVQE 656

Query: 662 DAKHILTQDPDL 673
            A+ +  + P  
Sbjct: 657 IAEALQQEHPQW 668


>gi|88800532|ref|ZP_01116095.1| ATP-dependent DNA helicase RecG [Reinekea sp. MED297]
 gi|88776763|gb|EAR07975.1| ATP-dependent DNA helicase RecG [Reinekea sp. MED297]
          Length = 693

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 256/696 (36%), Positives = 383/696 (55%), Gaps = 22/696 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +  L+++        T   DLLF+ P  + DR     I  +    
Sbjct: 7   LSAPISRLKGAGPKLADKLAQL------ELTSIGDLLFHLPYKYQDRTRITPIGSLRLGM 60

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            V I G I + +     +RR     + DG+G +T+  F+  T+  ++V   G  I   G+
Sbjct: 61  AVVIEGDI-RGTQVAFGRRRSLICRIQDGSGLLTIRLFHF-TKAQQHVLKNGAAIRCYGE 118

Query: 129 IKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-- 184
           ++     + M+HP Y        +     +  +Y    G+     + +I +AL  L    
Sbjct: 119 VRMGPTGLEMIHPEYQVREQGEFEALDQRLTPLYPTTEGIHQIRLRNLIEQALDVLNAQG 178

Query: 185 -LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIA 239
            LPEW+  D L     PS+ +A   +H P    D     +   PA++RLA++ELLA  ++
Sbjct: 179 GLPEWLPPDWLTPWQLPSLTDALRTLHRPDPNTDTQTLLDGEHPAQQRLAFEELLAHHLS 238

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L  +R+  +     PI    ++   +   +PFS T +Q+    +I QD++    MLR++Q
Sbjct: 239 LQALRQATQATGAQPIAKSKRLVPALRDQLPFSLTGAQQRVCGEIAQDLAHPFPMLRLVQ 298

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKTLVALIA   A+E+G Q  +MAP  +LA+QH+  ++ + +   + + ++ G  
Sbjct: 299 GDVGAGKTLVALIAALQAIESGLQVALMAPTELLAEQHFLNMQAWCEPLGVSIGLLLGKT 358

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            +  R + L+ +  G+  +++GTHALFQ  + Y+ L LVI+DEQHRFGVQQRL L +KA 
Sbjct: 359 SRKDRNQLLDGLERGEVQLLVGTHALFQKGVDYHNLGLVIIDEQHRFGVQQRLALKEKAN 418

Query: 420 A--PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L MTATPIPRTL +T+  D+DIS I E P GR P+ T +I  +R + VI R+  
Sbjct: 419 NGTPHQLTMTATPIPRTLAMTAFADMDISIIDELPPGRTPVTTTVISQDRREAVIRRVNA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDS 536
              +G++ YW+C  IEE +E    +     N L E      I ++HG++   DK  +M +
Sbjct: 479 ACDDGRQIYWVCTLIEESEELQAEAAEATANRLAEALPGRQIGLLHGKLKAADKSRLMAA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G   +L+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L++
Sbjct: 539 FKAGELDILVATTVIEVGVDVPNASVMIIENPERLGLAQLHQLRGRVGRGTTESYCLLMF 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLS+    RL V++ T DGF+IAEEDLK R  GE+LG +Q+G   F +A  E    LL
Sbjct: 599 GQPLSEQGKQRLEVMRQTSDGFVIAEEDLKLRGPGEVLGTRQTGAVGFRVADMERDAHLL 658

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           E     A  +  + P  +       R L+   +Y +
Sbjct: 659 EHIPALADRLNREYP--SHSPHIIARWLINADRYAQ 692


>gi|271502623|ref|YP_003335649.1| ATP-dependent DNA helicase RecG [Dickeya dadantii Ech586]
 gi|270346178|gb|ACZ78943.1| ATP-dependent DNA helicase RecG [Dickeya dadantii Ech586]
          Length = 693

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 256/697 (36%), Positives = 387/697 (55%), Gaps = 26/697 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            PLST  GVG   +  L+++            DLL + P  + DR +   I+++      
Sbjct: 9   QPLSTLAGVGASQAEKLARL------GLETVQDLLLHLPLRYEDRTHLYHINDLLPGMYA 62

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           T+ G + + S     +RR     ++DG+G +TL FF     M KN    G+++   G+I+
Sbjct: 63  TVEGDVLR-SDITFGQRRMLTCQISDGSGMLTLRFFNFNAAM-KNSLSPGQRVLAYGEIR 120

Query: 131 KLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP-- 186
           + K    M+HP Y              +  VY    G+     +K+  +AL  L   P  
Sbjct: 121 RGKLGGEMIHPEYRVQGESATVELQETLTPVYPTTEGVRQATLRKLTDQALKLLDTHPID 180

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKA----KDFEWTSPARERLAYDELLAGQIALLL 242
           E + +++       S+ +A   +H P       +  +   PA++RL  +ELLA  +++L 
Sbjct: 181 ELLPQEMR--HGLISLPDALRTLHRPPPDVKLAELEQGKHPAQQRLVMEELLAHHLSMLA 238

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R   ++   + ++ +  + Q++L  +PFSPT +Q+  + +I QDM+Q   M+R++QGDV
Sbjct: 239 VRAGAQRHRALALDTKDDLKQQLLAALPFSPTGAQQRVVAEIEQDMNQPFPMMRLVQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   I V  + G     
Sbjct: 299 GSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHAANFRRWFEPLGIEVGWLAGKQKGK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419
            R+   E IA GQ  ++IGTHA+FQ  +Q+  L LVI+DEQHRFGV QRL L +K     
Sbjct: 359 ARQAQQEAIASGQVSMVIGTHAIFQQQVQFSGLALVIIDEQHRFGVHQRLALWEKGEEQG 418

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV- 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  ++IER++  
Sbjct: 419 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRADIIERVRHA 478

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L EG++AYW+C  IEE +    ++       L       ++ ++HGRM   +K++VM++
Sbjct: 479 CLQEGRQAYWVCTLIEESELLEAQAAEATCQELKAALPELTVGLVHGRMKAQEKQAVMEA 538

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK     LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 539 FKTNQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLY 598

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G   F +A      +L+
Sbjct: 599 KSPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAAFKVADLLRDQALI 658

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
              ++ ++HI    P+    R    R L    +Y  A
Sbjct: 659 PQVQRVSRHIHEHYPE--HARALIERWLPERTRYTNA 693


>gi|302392174|ref|YP_003827994.1| ATP-dependent DNA helicase RecG [Acetohalobium arabaticum DSM 5501]
 gi|302204251|gb|ADL12929.1| ATP-dependent DNA helicase RecG [Acetohalobium arabaticum DSM 5501]
          Length = 793

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 245/696 (35%), Positives = 389/696 (55%), Gaps = 19/696 (2%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
              +   +GVGKK +  L+++            D+LFY P  + D      I E+S +  
Sbjct: 110 QKSIRYVKGVGKKRAEKLARL------EIDTLRDMLFYIPRDYRDWSKNLPIRELSPDSE 163

Query: 70  VTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           VT TG +   +  + +K     K++++D TG +  ++F +    +K  F  G  ++ +G+
Sbjct: 164 VTATGQVVDSTELRPRKGLTITKVIISDNTGRLAGVWFNQS--YIKQKFKPGMAVSFSGE 221

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLP 186
           +K+    + + HPHY   +S     P  I  VYS   GLS +L +KI+   L   L   P
Sbjct: 222 VKQEYGELQITHPHYEIMDSDKELDPGKILPVYSTTQGLSQNLLRKIVSRILKEHLDRFP 281

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +   +  K     + EA   IH P + ++      AR+RLA+ EL   Q+ +LL +  
Sbjct: 282 ESLSPGIKDKYDLLDVKEALYKIHFPDQIREV---KEARQRLAFGELFILQLGILLKKTD 338

Query: 247 F-KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
              +E G+      ++    L ++PF  T +Q     +I  ++     M R++QGDVGSG
Sbjct: 339 LLTEEEGLVHTGSDELITNFLSDLPFELTSAQRRVWAEIKDNLESSIVMNRLVQGDVGSG 398

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +A+  AV +G Q  +MAP  ILA+QHY  +K+  +   + + ++ G++ ++ R+
Sbjct: 399 KTVVATLALLKAVSSGYQGAMMAPTEILAEQHYLSLKESLEEYGLQIGLLVGSLKKSERK 458

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + +  I  G+  I+IGTHAL Q+ + + KL LVI DEQHRFGV+QR  L +K   P VL+
Sbjct: 459 EVIAGIESGEVDIVIGTHALLQEEVSFAKLGLVITDEQHRFGVRQRAILKEKGENPDVLV 518

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL LT  GD+D+S I E P GRKP+ T        D++ + ++  +  G++A
Sbjct: 519 MTATPIPRTLALTLYGDLDLSVIDELPPGRKPVITEWRREKDFDKIFDFIRQEVKSGRQA 578

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP +EE +E + RS       L E       I ++HG++   +KE+VM+ F++    
Sbjct: 579 YIVCPLVEESEELDVRSAENMAEKLDEDIFPEFKIGLLHGQLKTDEKEAVMEGFRSQQID 638

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGR E  S CIL+  P  ++ 
Sbjct: 639 ILVSTTVIEVGVDVANATLMVILDAQRFGLAQLHQLRGRVGRSEYQSYCILVADPG-TET 697

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  + DGF+IAEEDL+ R  GE  G +Q G+P   +A       L+E+ARK+A
Sbjct: 698 GRERMKIMTQSTDGFVIAEEDLQLRGPGEFFGTRQHGLPDLEVADLLRDSRLVELARKEA 757

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           + ++  DP L     Q +  LL   ++ + F+ I  
Sbjct: 758 RKVVDSDPKLQQEEHQLLADLLQA-KFGDGFELIDV 792


>gi|71733507|ref|YP_272494.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554060|gb|AAZ33271.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322268|gb|EFW78364.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331916|gb|EFW87854.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 691

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 253/694 (36%), Positives = 393/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+++            D+LF+ P  + DR     I  +   +   
Sbjct: 8   SVTALKGVGEAMAEKLARV------GLETLQDVLFHLPLRYQDRTRVVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   I L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLIRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+  +L +      + +A   +H+P    D E        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGDVG
Sbjct: 240 RESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +    
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K      
Sbjct: 360 RATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAEKAAIMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 QGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPQHVSPL--LDRWLRHGQQYGQ 690


>gi|331018574|gb|EGH98630.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 691

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 253/694 (36%), Positives = 395/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+K+            D+LF+ P  + DR     I  +S  +   
Sbjct: 8   SVTALKGVGEAMAEKLAKV------GLENLQDVLFHLPLRYQDRTRIVPIGALSPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPPPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+ ++L +      + +A   +H+P    D +        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGDVG
Sbjct: 240 RESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +    
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVDVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K      
Sbjct: 360 RVTSLEQIATGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCKAAETTYEELTSALGEVRVGLIHGRMKPAEKAAIMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 QGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPQHVSPL--LDRWLRHGQQYGQ 690


>gi|260913046|ref|ZP_05919528.1| DNA helicase RecG [Pasteurella dagmatis ATCC 43325]
 gi|260632633|gb|EEX50802.1| DNA helicase RecG [Pasteurella dagmatis ATCC 43325]
          Length = 693

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 258/687 (37%), Positives = 381/687 (55%), Gaps = 26/687 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++T  GVG   S  LS+I            DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PITTLSGVGPAVSEKLSRI------GIHNLQDLLFHLPIRYEDRTRITPIKDLRPESYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q    Q  KR    + L+DGT +I+L FF     M K+    G ++   G+IK+
Sbjct: 64  IEG-IVQTCEVQFGKRPILSVSLSDGTSKISLRFFNFNAGM-KSSLQPGARVKAFGEIKR 121

Query: 132 LKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            +    + HP Y         V    +  +YS   GL  +  +K+  +AL+ L  +   E
Sbjct: 122 GRFMAEIHHPDYQILRDNVPSVLEETLTPIYSTTEGLKQNSLRKLTDQALAVLDKIQIAE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
            +  +        S+ EA   +H P      E       PA++RL ++ELLA  +A+  +
Sbjct: 182 ILPNEFNPHPF--SLKEAIRFLHRPPPDTSLEALENGKHPAQQRLIFEELLAHNLAMQKV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   ++    P++    + Q+ L  +PF PT +Q    +DI +D++    M+R++QGDVG
Sbjct: 240 RLGTQQFSAYPLHYRSDLKQRFLAQLPFKPTNAQARVTQDIERDLANPFPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +    
Sbjct: 300 SGKTLVAALAAILAIDNGKQVALMAPTEILAEQHTASFRRWLEPLGIEVGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R+  LE I  G+  +++GTHALFQ+++++  L LVIVDEQHRFGV QRL L +K      
Sbjct: 360 RQTELEDIRTGKVQMVVGTHALFQENVEFSDLALVIVDEQHRFGVHQRLMLREKGKKADM 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R  EVI       
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRAEVIARVNNAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSF 537
           ++E ++AYW+C  I+E +    ++       L +      I ++HGRM   +K+ +M +F
Sbjct: 480 VNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLRKILPHLRIGLVHGRMKPAEKQEIMTAF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y 
Sbjct: 540 KSAEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGTTASFCVLMYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL VL+ T+DGF+I+E+DL+ R  GE+LG KQ+G+ +F +A       ++ 
Sbjct: 600 PPLGKISQKRLQVLRETQDGFVISEKDLEIRGPGEVLGTKQTGIAEFKVANLLRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRIL 684
             +  A+ ++ + PD+ +   Q  R L
Sbjct: 660 TVQYYARRLIVEQPDIAAKLTQ--RWL 684


>gi|24375845|ref|NP_719888.1| ATP-dependent DNA helicase RecG [Shewanella oneidensis MR-1]
 gi|24350804|gb|AAN57332.1|AE015869_8 ATP-dependent DNA helicase RecG [Shewanella oneidensis MR-1]
          Length = 688

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 257/696 (36%), Positives = 401/696 (57%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV K+ +  L+K+        T   DLLF+ P  + DR     I+ +      T
Sbjct: 5   PITELKGVAKRVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGNYGT 58

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG ++L FF       +N    G  I   G+I++
Sbjct: 59  IEAEIQSTQILQ-GRKRMLVCNVRDNTGSMSLRFFNFSMAQ-RNAMQNGLMIRAYGEIRR 116

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             ++  +VHP Y I +  +D++    +  +Y    GL    + K+  +AL  L    L E
Sbjct: 117 GNHQAEIVHPEYKIVYPGEDIHLSDTLTPIYPTTEGLKQASWIKLTEQALELLEDGGLTE 176

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLLM 243
            +  DL  + +  S+ +A   +H P       D E    PA++RL  +ELLA  +++L +
Sbjct: 177 LLPADL--QPNNMSLKQALQTLHRPHAGISQFDLELGQHPAQQRLVQEELLAHNLSMLRL 234

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++   +  + ++  G++    L ++PF PT +Q+  + +I +D++Q + M+R++QGDVG
Sbjct: 235 RQRSNLDAAVTMHATGQLLNPFLTSLPFKPTGAQQRVVAEIGKDLAQPHPMMRLVQGDVG 294

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +    
Sbjct: 295 SGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAANFAAWFEPLGLKVGWLAGKLKGKA 354

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R ++L  I  G A I+IGTHA+FQ  + ++KL L+I+DEQHRFGV QR+ L +    +  
Sbjct: 355 RAQSLADIESGAAQIVIGTHAIFQQQVIFHKLALIIIDEQHRFGVHQRMGLREKGINQGF 414

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R +EV+ER++  V
Sbjct: 415 HPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDSRRNEVLERVRNSV 474

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++ ++AYW+C  IEE +    ++  +    L +     +I ++HGRM   +K+ +M  F
Sbjct: 475 ITDKRQAYWVCTLIEESEVLECQAAEDTAEELRQALPELTIGLVHGRMKSAEKQKIMADF 534

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K GT  LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 535 KAGTINLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 594

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS+ +  RL+VL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA      +L+ 
Sbjct: 595 APLSQTASQRLNVLRQSNDGFVIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQALIP 654

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H+++Q PD  +V     R L +  QY +A
Sbjct: 655 HIQKLANHVMSQAPD--AVDAIIHRWLGHRQQYVQA 688


>gi|300923463|ref|ZP_07139503.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 182-1]
 gi|300420290|gb|EFK03601.1| ATP-dependent DNA helicase RecG [Escherichia coli MS 182-1]
          Length = 693

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 388/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPKYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            ++K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PVEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|289646385|ref|ZP_06477728.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 691

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 252/694 (36%), Positives = 393/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+++            D+LF+ P  + DR     I  +   +   
Sbjct: 8   SVTALKGVGEAMAEKLARV------GLETLQDVLFHLPLRYQDRTRVVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+  +L +      + +A   +H+P    D E        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGDVG
Sbjct: 240 RESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +    
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K      
Sbjct: 360 RATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPLGRTPVNTVLVADSRRLEVVERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAEKAAIMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 QGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPQHVSPL--LDRWLRHGQQYGQ 690


>gi|187732822|ref|YP_001882365.1| ATP-dependent DNA helicase RecG [Shigella boydii CDC 3083-94]
 gi|187429814|gb|ACD09088.1| ATP-dependent DNA helicase RecG [Shigella boydii CDC 3083-94]
          Length = 693

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MTGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSMIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|307547000|ref|YP_003899479.1| ATP-dependent DNA helicase RecG [Halomonas elongata DSM 2581]
 gi|307219024|emb|CBV44294.1| ATP-dependent DNA helicase RecG [Halomonas elongata DSM 2581]
          Length = 693

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 255/685 (37%), Positives = 382/685 (55%), Gaps = 22/685 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++ L AP++  +GVG+  +L L+++            DLLF+ P  + DR     I+ + 
Sbjct: 1   MSELDAPVTNLKGVGEALALKLARLR------IESVADLLFHLPLRYQDRTRVTPIATLR 54

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
                 + G ++     + ++R     L  DG+G ++L FF+      +  F  G ++  
Sbjct: 55  AGGEAVVEGEVAAAEVVRGRRRSLLVRL-RDGSGILSLRFFHFSPAQ-QQQFRAGIRVRA 112

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLP- 183
            G+ +     + + HP Y   N         +  +Y    GL     + +I +AL+RL  
Sbjct: 113 FGEARAGATGLEIYHPEYRLLNDATAPVEDHLTPIYPTTEGLHQTRLRALIGQALARLDA 172

Query: 184 ---VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAG 236
               LPEW+   L Q+ + P++ E    +H P    D     E   PA  RLA +ELLA 
Sbjct: 173 APDELPEWLPDTLRQRFALPALHECLQTLHRPPPDADPQALAEGQHPATRRLALEELLAH 232

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q++L  +R + +++    +     +  + L  +PFS T +Q   + +I  D++ +  MLR
Sbjct: 233 QLSLREVRLRIQRDGAPSLPDGRGLQARFLTQLPFSLTGAQRRVLDEIRADLAGEMPMLR 292

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKT+VA +A  +A+  G QA IMAP  ILA+QHY   + + +   I V  + 
Sbjct: 293 LVQGDVGSGKTVVAAMAALSAIAGGCQAAIMAPTEILAEQHYRAFRAWFEPLGIDVAWLA 352

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G +    R      I  G+A +++GTHALFQ  + + +L L IVDEQHRFGV QRL L +
Sbjct: 353 GKLKGKARLDTKAAIHDGRAQMVVGTHALFQGDVHFQRLGLAIVDEQHRFGVHQRLALRE 412

Query: 417 KAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           K       PH L+MTATPIPRTL +++  D+D+S I E P GR P+KT ++P  R  EV+
Sbjct: 413 KGEAGGFTPHQLVMTATPIPRTLAMSAYADLDVSVIDELPPGRTPVKTAVVPDERRPEVV 472

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531
           ER++   +EG++AYW+C  IEE +    ++     + L E     +I ++HGRM   +K 
Sbjct: 473 ERIRHACAEGRQAYWVCTLIEESEALQCQAAEATRDELVEALPGLNIGLVHGRMKASEKA 532

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            VM++FK G   LL+ATTVIEVG+DV +AS++IIEN E  GL+QLHQLRGRVGRG   S 
Sbjct: 533 EVMEAFKEGELDLLVATTVIEVGVDVPNASLMIIENPERLGLSQLHQLRGRVGRGSTESY 592

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C+LLYHPPLS  S  RL+V++ T DGF IAE DL+ R  GE+LG +Q+G+ +  IA  E 
Sbjct: 593 CLLLYHPPLSDTSRQRLTVMRETTDGFRIAERDLEIRGPGEVLGTRQTGLAQMKIADLER 652

Query: 652 HDSLLEIARKDAKHILTQDPDLTSV 676
              LL      A+ +L   P+ +  
Sbjct: 653 DADLLPHVSPLAEALLATHPEASQP 677


>gi|37678423|ref|NP_933032.1| RecG-like helicase [Vibrio vulnificus YJ016]
 gi|37197163|dbj|BAC93003.1| RecG-like helicase [Vibrio vulnificus YJ016]
          Length = 693

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 264/694 (38%), Positives = 402/694 (57%), Gaps = 29/694 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L KI        +   DLLF+ P  + DR     I+++       
Sbjct: 10  PLTSLSGVGAKVAEKLEKI------GLSSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAA 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G++ Q  +    KR+   + L+DG G ITL FF   T  +KN F EG+ +   G+IK+
Sbjct: 64  VQGHVMQVDTL-FGKRKMLTVKLSDGNGTITLRFFNF-TAAMKNNFAEGKLVHAYGEIKR 121

Query: 132 LKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F     +      +  VY    GL     + +  +AL+ L    + E
Sbjct: 122 GNMGLEIVHPDYKFFAPTQKPDVEQSLTPVYPTTDGLRQITLRNLTDQALALLDKAAVQE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            +   L  ++   ++ +A +IIH P    D E       PA+ RL  +ELLA  +++L +
Sbjct: 182 LLPAGLYDQQ--LTMGQALHIIHRPSPEIDLELFDEGKHPAQVRLIMEELLAQNLSMLAV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + ++++ +P+    ++ Q++L  +PFSPT +Q   +++I +DM + + M+R++QGDVG
Sbjct: 240 RSKGQQDVALPLPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDMQKAHPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIPVGWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           +   L RIA G+A +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 360 KEAELARIASGEAKMVVGTHALFQEHVVFDHLALVIIDEQHRFGVHQRLELREKGAKQGA 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + ++++ER++   
Sbjct: 420 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERIRHAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM +F
Sbjct: 480 LNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVRIGLVHGRMKPAEKQAVMQAF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 540 KNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RLSVL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 600 APLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQRLIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
             ++ A++I    P     +  +  I  +L + +
Sbjct: 660 EVQRAARYIHHNYP-----QNAAAIIERWLGERD 688


>gi|290502|gb|AAA62005.1| DNA recombinase [Escherichia coli]
          Length = 693

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 257/707 (36%), Positives = 383/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I   P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDXXPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R     ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVHHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL V +++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVXRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|39996428|ref|NP_952379.1| ATP-dependent DNA helicase RecG [Geobacter sulfurreducens PCA]
 gi|39983308|gb|AAR34702.1| ATP-dependent DNA helicase RecG [Geobacter sulfurreducens PCA]
          Length = 714

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 239/709 (33%), Positives = 382/709 (53%), Gaps = 25/709 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG K +  L++             D L+  P+ + DR     ++ +    
Sbjct: 12  LETPMQFIKGVGPKMAEILAR------KGIVTVEDALYLLPNRYEDRRQVVPMNRLRPGE 65

Query: 69  IVTITGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
                G +        +  RR ++++  D +G ++  +F      ++  +  GR+   TG
Sbjct: 66  TCVFAGEVVSADVVTTKGGRRFFEVMARDASGVMSFKWFNYHAAFMRKAWQPGRRGIFTG 125

Query: 128 KIKKLKNRIIMVHPHYIFHNSQD----------VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
           ++ +   +  + HP   +    +          V F  +  VY L  GL+    +K++ E
Sbjct: 126 QVTQYGLQREVHHPDVDWLAEGETVEAAMARDPVGFGRLVPVYPLTEGLNQKALRKVMKE 185

Query: 178 ALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDE 232
            + R  P +   +   ++++++   +AEA   +H P    D     E   PA   L +DE
Sbjct: 186 VVDRFAPCVESALPARVIRERALLPLAEALGAVHFPAADADPRALEEGRDPAHRTLVFDE 245

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
               ++ L L R+    E GI  +V     + +L+ +PF+ T++Q   + +I  DM   +
Sbjct: 246 FFFLELGLALKRRGVTLEPGIAFSVNHTYTKPLLKLLPFALTEAQRRVLAEIKADMMAPH 305

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++QGDVG GKTLVAL+A   AVE G Q  IMAP  ILA+QHY  I ++ +   + V
Sbjct: 306 PMHRLVQGDVGCGKTLVALLAALVAVENGYQVAIMAPTEILAEQHYLNIHRWCEQLGVTV 365

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++T ++    +  ALER+A G+  I+IGTHA+ QD +++++L L IVDEQHRFGV QR 
Sbjct: 366 ALLTSSLKGKAKAGALERVARGEVQIVIGTHAVIQDKVEFHRLGLGIVDEQHRFGVLQRG 425

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L +K   P +L+MTATPIPRTL +T  GD+ +S I E P GR P++T I   +R  +V 
Sbjct: 426 LLRKKGENPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPVETKICTDSRRRQVY 485

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDK 530
             ++  ++ G +AY I P +EE ++S  ++  +    L         + ++HGRM   +K
Sbjct: 486 GIIRDEVAAGHQAYVIYPLVEESEKSELKAATQMAEHLANDVFPDLRLGVLHGRMKPEEK 545

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E+VM SFK     +L++TTVIEVGIDV +A++++IE+AE FGL+QLHQLRGRVGRG   S
Sbjct: 546 EAVMRSFKGREIDILVSTTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVGRGSATS 605

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            CIL+    LS +   RL V+++T DGF IAE DL+ R  G+ LG +Q+G+P F +A   
Sbjct: 606 RCILMASDRLSDDGVKRLRVMESTTDGFRIAEADLEIRGPGDFLGTRQAGIPDFRVANIL 665

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
               +LE AR +A  +  +DP+L +   + +R  L   ++    +    
Sbjct: 666 RDGRILEEARAEAFDLAERDPELRAPGHEPLREELAR-RWGGRLELAGV 713


>gi|289625459|ref|ZP_06458413.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330866514|gb|EGH01223.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 691

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 252/694 (36%), Positives = 393/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+++            D+LF+ P  + DR     I  +   +   
Sbjct: 8   SVTALKGVGEAMAEKLARV------GLETLQDVLFHLPLRYQDRTRVVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+  +L +      + +A   +H+P    D E        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGDVG
Sbjct: 240 RESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +    
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K      
Sbjct: 360 RATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPLGRTPVNTVLVADSRRLEVVERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEIRVGLIHGRMKPAEKAAIMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 QGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPQHVSPL--LDRWLRHGQQYGQ 690


>gi|56461474|ref|YP_156755.1| DNA helicase RecJ [Idiomarina loihiensis L2TR]
 gi|56180484|gb|AAV83206.1| DNA helicase RecJ [Idiomarina loihiensis L2TR]
          Length = 693

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 261/687 (37%), Positives = 396/687 (57%), Gaps = 26/687 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+  +GVG+K ++ L K+            D L + P  + DR     ++ +       
Sbjct: 10  PLTVLKGVGEKVAVKLRKL------GLASVSDALLHLPLRYEDRTQVTDVANLRAGVATN 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           +   + +H+  +  ++R      +D TG I+L FF      LK  F +G ++   G++++
Sbjct: 64  VLVTV-RHADIKYGRKRMLICQASDETGSISLRFFQFSAAQLKQ-FAQGTQLLAFGEVRR 121

Query: 132 LKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
                 MVHP Y    + +       +  VY +  G++  + +KII +AL+ L    LPE
Sbjct: 122 GMTGWEMVHPEYRMVKAGEPLNMQETLTPVYPMTEGVTQGILRKIIEQALTYLQPGSLPE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            + ++L   +   S+ +A   +H P          +   PA++RLA +EL+A Q++LL +
Sbjct: 182 LLPENLRPHQ--LSLEQAILTLHRPPVDVPLALLEQGEHPAQQRLASEELIAHQLSLLQL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + + G  I   G + +  L+ +PFSPT +Q   +K+I  DM+Q   M+R++QGDVG
Sbjct: 240 RQARQAQAGFTIKGNGALQEAFLKQLPFSPTGAQTRVVKEITSDMAQGQPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA ++  AA+EAG Q  +MAP  +L++QH     ++     I V  ++G      
Sbjct: 300 SGKTLVAALSALAAIEAGYQVALMAPTELLSEQHAITFSQWLMPLGINVAWLSGKSKGKS 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT----QKAT 419
           RR+ L ++  G  H+++GTHALFQ  ++Y +L LVI+DEQHRFGV QRL+L     Q   
Sbjct: 360 RRELLAQLKQGDIHLLVGTHALFQADVEYRRLALVIIDEQHRFGVHQRLQLREKGVQAGV 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T+  D+  S I E P GR P+ TV IP  R ++++ER++ V 
Sbjct: 420 HPHQLIMTATPIPRTLAMTAYADLATSVIDELPPGRTPVTTVAIPDTRREQIVERVREVC 479

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++AYW+C  IEE      ++  +  N L E     SI ++HGR+    KE VM +F
Sbjct: 480 ATEGRQAYWVCTLIEESDVLECQAAEDTANDLQEQLPGLSIGLVHGRLKHEQKEQVMQAF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 540 KAGDIDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS+ +  RL VL+ + DGF+IA+ DL+ R  GE+LG +Q+G+ +  +A  E  ++L+ 
Sbjct: 600 SPLSQTAQQRLGVLRESNDGFVIAQRDLEIRGPGELLGHRQTGLAELKVADLERDEALIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRIL 684
            A+  A+H+L   P   S      R L
Sbjct: 660 EAQNIAQHVLEHYP--QSAEALIERWL 684


>gi|300113780|ref|YP_003760355.1| ATP-dependent DNA helicase RecG [Nitrosococcus watsonii C-113]
 gi|299539717|gb|ADJ28034.1| ATP-dependent DNA helicase RecG [Nitrosococcus watsonii C-113]
          Length = 713

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 263/697 (37%), Positives = 387/697 (55%), Gaps = 23/697 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P++T +GVG   +  L+++         +  DLLF+ P  + DR     IS + + R
Sbjct: 26  LATPVTTLKGVGPSLANRLARL------GLCKVQDLLFHLPQRYQDRTRVAPISLLQKGR 79

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              I G I Q    +  +R+     L+D TG+I L FF+      +N+   G ++   G+
Sbjct: 80  EALIEGEI-QLCELRPGRRQSLLCSLSDRTGKIFLRFFHFSA-WQQNLLTPGARVRCFGE 137

Query: 129 IKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PV 184
            ++    + MVHP Y  +  +   V    +  VY +  GL     + +I   L  L    
Sbjct: 138 PRQGAAGLEMVHPDYHRLSEDRPAVTEAYLTPVYPVTEGLRQSSLRDLIQGVLKDLGEEG 197

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240
           + + +    L     P+++EA   +H P          E   P ++RLA++ELLA  ++L
Sbjct: 198 IIDHVPSGFLAGIGLPTLSEALMYLHQPPPDAPLDLLAEGKHPVQQRLAFEELLAHHLSL 257

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R +        ++ EG++ Q+ L  +PF  T +Q    ++IL DM+Q++ M R+LQG
Sbjct: 258 RQLRLRTSCLQAPLLSSEGRLQQRFLATLPFPLTAAQSQVAQEILADMAQESPMQRLLQG 317

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A+  AVEAG QAV+MAP  +LA+QH   ++ +   + I VE +     
Sbjct: 318 DVGSGKTVVAALAILQAVEAGYQAVLMAPTELLAEQHLRVLQDWFCPSDIKVEWLAAKRT 377

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT- 419
              RR++LER+  G+  + +GTHALFQ+ + ++ L LV+VDEQHRFGV+QRL L +K   
Sbjct: 378 AKARRESLERLEGGETAVAVGTHALFQEGVNFHNLGLVVVDEQHRFGVEQRLALREKGRY 437

Query: 420 ---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D+D S I + P GR P+ T +    R DEV+ R++
Sbjct: 438 GNSCPHQLIMTATPIPRTLAMTAYADLDTSVIDQLPPGRIPVATAVASDRRRDEVVARVR 497

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
                G++AYW+C  IEE      ++  E    L E      I +IHGRM   +KE  M 
Sbjct: 498 WACRAGRQAYWVCTLIEESDSLQAQAAEESAAELAEALPELRIGLIHGRMKTQEKERTMA 557

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK+G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+LL
Sbjct: 558 AFKSGILHLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGAADSYCVLL 617

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YH PLS+ S  RL+ L+ T DGF IA  DL+ R  GE+LG +Q+G+P++ +A       L
Sbjct: 618 YHGPLSELSRARLACLRATNDGFEIARRDLELRGPGEVLGTRQTGLPQYRVANLMRDQEL 677

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           L    + A     + P    V     R L    +Y E
Sbjct: 678 LVSVGQVADRFQQRYP--AQVASLISRWLGEENRYGE 712


>gi|242241346|ref|YP_002989527.1| ATP-dependent DNA helicase RecG [Dickeya dadantii Ech703]
 gi|242133403|gb|ACS87705.1| ATP-dependent DNA helicase RecG [Dickeya dadantii Ech703]
          Length = 693

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 263/707 (37%), Positives = 388/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   LN    PLST  GVG   +  L++I            DLL + P  + DR +   
Sbjct: 1   MQSRLLN--TQPLSTLAGVGASQATKLARI------GLETVEDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+ G + + S     +RR     ++DG+G +TL FF     M KN    G
Sbjct: 53  INDLLPGIYATVEGEVLR-SDISFGRRRMLTCQISDGSGMLTLRFFNFNAGM-KNSLSPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           ++I   G+I++ K    ++HP Y       Q      +  VY    G+     +K+  +A
Sbjct: 111 QRILAYGEIRRGKLGAEIIHPEYRLQGETAQLELQETLTPVYPTTEGIRQATLRKLTDQA 170

Query: 179 LSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L  L   P  E + +++       S+ +A   +H P      E       PA++RL  +E
Sbjct: 171 LQLLDTHPIDELLPQEMR--HGLISLPDALRTLHRPPPDVRLEALEQGKHPAQQRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P+  + ++ Q++L  +PFSPT +Q+  + +I QDMSQ  
Sbjct: 229 LLAHNLSMLAVRAGAQRYHAQPLAPDERLKQRLLAALPFSPTAAQQRVVAEIEQDMSQPF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAITHGRQVALMAPTELLAEQHAINFRNWFAPLGIDV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   + IA G   +++GTHA+FQ  +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQDAIASGAVAMVVGTHAIFQQQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            +VI+R++   L E ++AYW+C  IEE      ++       L       +I ++HGRM 
Sbjct: 469 ADVIQRVRHACLQEERQAYWVCTLIEESDLLEAQAAEATLQELQAALPDLTIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM++FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 TQEKQAVMEAFKTGRLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +L+   ++ A+HI    P+    R    R L    +Y  A
Sbjct: 649 ADLLRDQALIPQVQRVARHIHAHYPE--HARALIERWLPESARYTNA 693


>gi|148976489|ref|ZP_01813185.1| ATP-dependent DNA helicase RecG [Vibrionales bacterium SWAT-3]
 gi|145964065|gb|EDK29322.1| ATP-dependent DNA helicase RecG [Vibrionales bacterium SWAT-3]
          Length = 692

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 263/696 (37%), Positives = 390/696 (56%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLNSLSGVGAKVAEKLEKV------GLNNVQDLLFHLPLRYEDRTRIYPIIKLHAGIWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF     M KN F EG+++   G+IK+
Sbjct: 63  VQGKVMSVDTI-FGKRKMLAVKISDGNGTITLRFFNFTAGM-KNNFAEGKQVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F     Q      +  VY    GL     + +  +AL  +    + E
Sbjct: 121 GNMGLEIVHPDYKFFAPRQQPDVEANLTPVYPTTEGLRQVTLRNLTDQALELIDKAAVNE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            +   L   +   ++A+A + IH P    D E       PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDHQ--ITLAQALHTIHRPPPGIDLELFDEGKHPAQLRLIMEELLAQNLSMLSV 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + +++  + +     +  K+L  +PFSPT +Q    ++I  D+ + + M+R++QGDVG
Sbjct: 239 RSKGQQDKAMSLPPMNTLKDKLLAQLPFSPTNAQARVTQEIETDLEKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRALEHGQQVALMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   L RIA G+A +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL+L +K      
Sbjct: 359 RETELARIASGEAQMMVGTHALFQEHVEFKNLGLVIIDEQHRFGVHQRLELREKGAKQGY 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++   
Sbjct: 419 YPHQLVMTATPIPRTLAMTAYADLETSIIDELPPGRTPIQTVAIPDTKRDDIVERVRNAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K++VM  F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAADTAEDLQRKLPDVKIGLVHGRMKPAEKQAVMQEF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 539 KENKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 SPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQRLIP 658

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             ++ A+HI    PD  + +    R L     Y++A
Sbjct: 659 EVQRIARHIHDSYPD--NAKAIINRWLGERDVYSKA 692


>gi|330876520|gb|EGH10669.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964238|gb|EGH64498.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 691

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 252/694 (36%), Positives = 395/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+K+            D+LF+ P  + DR     I  +S  +   
Sbjct: 8   SVTALKGVGEAMAEKLAKV------GLENLQDVLFHLPLRYQDRTRIVPIGALSPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPPPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+ ++L +      + +A   +H+P    D +        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + +  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGDVG
Sbjct: 240 RESLRSQRAPALPLAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +    
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K      
Sbjct: 360 RIASLEQIATGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCKAAETTYEELTSALGEVRVGLIHGRMKPAEKAAIMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 QGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQTLLERWPQHVSPL--LDRWLRHGQQYGQ 690


>gi|254491939|ref|ZP_05105118.1| ATP-dependent DNA helicase RecG [Methylophaga thiooxidans DMS010]
 gi|224463417|gb|EEF79687.1| ATP-dependent DNA helicase RecG [Methylophaga thiooxydans DMS010]
          Length = 695

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 261/679 (38%), Positives = 380/679 (55%), Gaps = 26/679 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P++  +GVG K +  L KI         +  DLLF+ P  + DR     +  +  ++
Sbjct: 7   LSQPVTALKGVGDKVAERLIKI------GVQQVQDLLFHLPLRYQDRTRLMPLGALRLQQ 60

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            V I G I Q S  +  +RR     ++DGTG I L FF+      +    +GR+I   G+
Sbjct: 61  EVLIEGVI-QLSQVKFGRRRSLLCHVSDGTGAIILRFFHFSKAQ-QQQLTKGRRIRCFGE 118

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           ++     + MVHP Y     +        +  VY    GL     +K+I +ALS L    
Sbjct: 119 VRNGPASLEMVHPEYQLLAEEGAVPVENELTPVYPTTEGLHQLSLRKLIKQALSCLDQ-- 176

Query: 187 EWIEKDLLQKKSF-----PSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQ 237
           E + + L+           S+ +A   +H P          +   PA++RLAY+ELLA Q
Sbjct: 177 ETMPELLIDGARLHQSAEYSLVDALQYVHQPPPDAPVQQLLDRHHPAQKRLAYEELLAQQ 236

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + +  +R Q +      +  +    Q +L  +PF  T++Q+    +ILQDM++   M R+
Sbjct: 237 LTMKKLRAQTQHHTAPVLQAKQDKRQALLDVLPFPLTQAQKRVTHEILQDMAEPRPMQRL 296

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA +A   AV +G QAV+MAP  +LA+QH+     +     I V    G
Sbjct: 297 VQGDVGSGKTVVAALAAIEAVASGCQAVMMAPTELLAEQHFRTFVNWLSPMNIEVGWCAG 356

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               + R++ L R+  G+  + +GTHALFQD + +  L LVI+DEQHRFGV QRL L  K
Sbjct: 357 KQTTSERKQMLARLQAGEISVAVGTHALFQDEVVFNNLGLVIIDEQHRFGVHQRLALRDK 416

Query: 418 AT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  PH L+MTATPIPRTL +T+  D++IS I E P GR P+ TV++P NR  +VIE
Sbjct: 417 GCDIDSMPHQLVMTATPIPRTLAMTAYADLNISVIDEMPPGRTPVTTVVLPDNRRHDVIE 476

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           R+     + ++ YW+C  IEE +    ++  +   SL +      I ++HGRM   DK++
Sbjct: 477 RVYAACQQQRQVYWVCTLIEESEHLQCQAAEDTATSLQDSLPDLRIGLVHGRMKTKDKDT 536

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM +FK G   +L+ATTVIEVG+DV +AS+++IENAE  GLAQLHQLRGRVGRG+  S C
Sbjct: 537 VMTAFKEGQLDMLVATTVIEVGVDVPNASLMVIENAERLGLAQLHQLRGRVGRGQIESHC 596

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +L+YHPPLS+N   RL  L+ T DGF IA+ DL+ R  GE+LG +Q+G+P+F +A     
Sbjct: 597 VLMYHPPLSENGQARLKCLRETNDGFKIAQRDLEIRGPGEVLGTRQTGLPQFRVADLIDD 656

Query: 653 DSLLEIARKDAKHILTQDP 671
             LL +    A  +L + P
Sbjct: 657 QDLLSVMDNAANVMLKEAP 675


>gi|302133612|ref|ZP_07259602.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 691

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 253/694 (36%), Positives = 395/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+K+            D+LF+ P  + DR     I  +S      
Sbjct: 8   SVTALKGVGEAMAEKLAKV------GLENLQDVLFHLPLRYQDRTRIVPIGALSPGHDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPPPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+ ++L +      + +A   +H+P    D +        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGDVG
Sbjct: 240 RESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  ++G +    
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVDVAWLSGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K      
Sbjct: 360 RVTSLEQIATGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCKAAETTYEELTSALGEVRVGLIHGRMKPAEKAAIMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 QGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPQHVSPL--LDRWLRHGQQYGQ 690


>gi|229845419|ref|ZP_04465549.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1]
 gi|229811615|gb|EEP47314.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1]
          Length = 693

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 256/688 (37%), Positives = 391/688 (56%), Gaps = 26/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLLF+ P  + DR     
Sbjct: 1   MSLELLDAV--PLTSLSGVGAAISNKLAKI------GIHNLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +  E+ VTI G I Q       +R    + L+DGT +I L FF     M +N F  G
Sbjct: 53  IANLRPEQYVTIEG-IVQTCEIAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++K+ ++   + HP Y  +  N+  V    +  +YS   GL  +  +K+  +A
Sbjct: 111 VRVKAFGEVKRGRHMPEIHHPEYQIVLDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E +  +    +   S+ EA  ++H P      E       PA++RL ++E
Sbjct: 171 LALLDKVQIAEILPNEFNPHQ--YSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +  
Sbjct: 229 LLAHNLAMQKVRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVLDIEQDLIKDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVNQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R 
Sbjct: 409 MLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
            E++       ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM 
Sbjct: 469 TEIVMRVKNACVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +
Sbjct: 589 STASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
           A       ++   +  AK ++ + PDL 
Sbjct: 649 ANLMRDRKMIPTVQFYAKSLIQKYPDLA 676


>gi|54307408|ref|YP_128428.1| ATP-dependent DNA helicase RecG [Photobacterium profundum SS9]
 gi|46911828|emb|CAG18626.1| putative ATP-dependent DNA helicase RecG [Photobacterium profundum
           SS9]
          Length = 697

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 258/699 (36%), Positives = 398/699 (56%), Gaps = 30/699 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+   GVG K +  L K+        T   DLLF+ P  + DR     I++    + + +
Sbjct: 11  LTELSGVGAKMAEKLEKV------GLTSVQDLLFHLPLRYEDRTRIWPIAQAMPGQHIAV 64

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +  +SS    KRR   + + D +G  TL FF     M +N   EG+++   G+IK+ 
Sbjct: 65  QGEVL-NSSITFGKRRMLTVRIADDSGSATLRFFNFNAAM-QNSLAEGKQVKAFGEIKRG 122

Query: 133 KNRIIMVHPHYIFHNSQ--DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPEW 188
           K  + ++HP Y              +  VY    GL     + +  +ALS L    + E 
Sbjct: 123 KFGLEIIHPDYSVFAESVSLTGEETLTPVYPTTEGLRQLTLRNLTDQALSLLDKAAVTEL 182

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLMR 244
           + + L  ++   ++A+A +++H P      +       PA+ RL  +ELLA  +++L +R
Sbjct: 183 LPEGLYDRQ--MTMAQALHVMHRPTPDVSLDQLEAGKHPAQHRLILEELLAQNLSMLAVR 240

Query: 245 KQFKKEIGIPI----NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            + ++    P+    N    + +K+L ++PFSPT +Q+  + DI  D+ +   M+R++QG
Sbjct: 241 SKSQQHSAWPLAACDNPADSLKEKLLASLPFSPTNAQQRVVADIEADLIKPLPMMRLVQG 300

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA +A   A++ G Q  +MAP  +LA+QH +   ++     I V  + G + 
Sbjct: 301 DVGSGKTLVAALAALQAIQHGFQVALMAPTELLAEQHAQNFAQWLNPMDIQVGWMAGKLK 360

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418
              R   L RI +G+A +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +K   
Sbjct: 361 GKARETELARIENGEAKMVVGTHALFQNHVSFKNLALVIIDEQHRFGVHQRLELREKGAN 420

Query: 419 --TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D++ S I E P GR P++TV +P +R   ++ER++
Sbjct: 421 EGHYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPVQTVALPDSRRAAIVERIR 480

Query: 477 -VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
              L+EG++AYW+C  I+E +    ++  +  N L       ++ +IHGRM   +K+ +M
Sbjct: 481 TACLNEGRQAYWVCTLIDESEVLEAQAASDTANDLTAQLPELNVGLIHGRMKAAEKQEIM 540

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK G  +LL+ATTVIEVG+DV +AS+++IEN E  GLAQLHQLRGRVGRG+  S C+L
Sbjct: 541 RRFKAGELQLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGKVASHCVL 600

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LYH PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       
Sbjct: 601 LYHAPLSKTAQKRLGVLRDSSDGFVIAQRDLEIRGPGELLGTKQTGIADFKIADLVRDQH 660

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           L+   +K A++I  Q P+  + +    R L     Y+ A
Sbjct: 661 LIPQVQKLARYIHEQHPN--NAKAIVQRWLGQRENYSNA 697


>gi|251791703|ref|YP_003006424.1| ATP-dependent DNA helicase RecG [Dickeya zeae Ech1591]
 gi|247540324|gb|ACT08945.1| ATP-dependent DNA helicase RecG [Dickeya zeae Ech1591]
          Length = 693

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 256/707 (36%), Positives = 390/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+    PLST  GVG   +  L+++            DLL + P  + DR +   
Sbjct: 1   MNSRLLH--TQPLSTLAGVGASQAEKLARL------GLETVQDLLLHLPLRYEDRTHLYL 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+ G + + S     +RR     ++DG+G +TL FF     M KN    G
Sbjct: 53  INDVLPGMYATVEGEVLR-SDITFGQRRMLTCQISDGSGMLTLRFFNFNAAM-KNSLSPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++   G+I++ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 QRVLAYGEIRRGKLGGEMIHPEYRVQGESTTVELQETLTPVYPTTEGVRQATLRKLTDQA 170

Query: 179 LSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKA----KDFEWTSPARERLAYDE 232
           L  L   P  E + +++       S+ +A   +H P       +  +   PA++RL  +E
Sbjct: 171 LKLLDTHPIDELLPQEMR--HGLISLPDALRTLHRPPPDVKLAELEQGKHPAQQRLVMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   + ++ +  + Q++L  +PFSPT +Q   + +I QDM++  
Sbjct: 229 LLAHHLSMLAVRAGAQRHRALALDTKDSLKQQLLAALPFSPTGAQHRVVAEIEQDMNKPF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHAANFRRWFEPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +++GTHA+FQ  +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVAMVVGTHAIFQQQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           D++I+R++   L EG++AYW+C  IEE +    ++       L       ++ ++HGRM 
Sbjct: 469 DDIIQRVRNACLQEGRQAYWVCTLIEESELLEAQAAEATCQELKAALPELAVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM++FK     LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 AQEKQAVMEAFKTNQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G   F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAAFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +L+   ++ ++HI    P+    R    R L    +Y  A
Sbjct: 649 ADLLRDQALIPQVQRVSRHIHEHYPE--HARALIERWLPERTRYTNA 693


>gi|193063827|ref|ZP_03044914.1| ATP-dependent DNA helicase RecG [Escherichia coli E22]
 gi|192930542|gb|EDV83149.1| ATP-dependent DNA helicase RecG [Escherichia coli E22]
          Length = 693

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 257/707 (36%), Positives = 385/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+      M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGNYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF  T +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKQTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|157149269|ref|YP_001456588.1| ATP-dependent DNA helicase RecG [Citrobacter koseri ATCC BAA-895]
 gi|157086474|gb|ABV16152.1| hypothetical protein CKO_05109 [Citrobacter koseri ATCC BAA-895]
          Length = 693

 Score =  588 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 253/689 (36%), Positives = 375/689 (54%), Gaps = 26/689 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MKGRLLDAI--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGIKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P  +    D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIAELLPPELAQ--GMTSLPEALRTLHRPPPSLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++     ++    +  ++L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQRLSANDSLKNQLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHASNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMVVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE      ++    +  L        I ++HGRM 
Sbjct: 469 SDIIDRVRNACTQEGRQAYWVCTLIEESDLLEAQAAEATWEELRLALPELKIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMAAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNTEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTS 675
           A      +++   ++ A+HI    P   +
Sbjct: 649 ADLLRDQAIIPDVQRIARHIHEHYPQQAT 677


>gi|320661351|gb|EFX28775.1| ATP-dependent DNA helicase RecG [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 693

 Score =  588 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 258/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MTGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P  R P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPSRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|238918011|ref|YP_002931525.1| ATP-dependent DNA helicase RecG [Edwardsiella ictaluri 93-146]
 gi|238867579|gb|ACR67290.1| ATP-dependent DNA helicase RecG, putative [Edwardsiella ictaluri
           93-146]
          Length = 693

 Score =  588 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 253/707 (35%), Positives = 388/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL++  GVG   +  L+K+            DLL + P  + DR    +
Sbjct: 1   MQGRLLDAV--PLTSLSGVGASQAGKLAKL------GLVTIQDLLLHLPLRYEDRTRLYR 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+     VT+ G + + +     +RR     ++DG+G +TL FF     M KN    G
Sbjct: 53  IGELQPGITVTVEGEVLR-TDVAFGRRRMLTSQISDGSGLLTLRFFNFSAAM-KNSLAPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++   G+IK+  +   ++HP Y              +  VY    G+     +K+  +A
Sbjct: 111 KRVLAYGEIKRGHHGAEIIHPEYRIQGDDAAPALQEALTPVYPTTEGVRQATLRKLSDQA 170

Query: 179 LSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDE 232
           L+ L +  +PE + + L Q     S+ EA + +H P      E       PA+ RL  +E
Sbjct: 171 LALLDITPIPELLPESLGQ--GLISLPEALHTLHRPPPDIHQEDLAQGRHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   + +  +  +  + L  +PF+PT +Q   + DI +DM++  
Sbjct: 229 LLAHHLSMLAVRADNQRHRALALATDDHLKHRFLAALPFTPTTAQRRVLDDIEKDMAKSV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVG GKTLVA +A   A+  G Q  +MAP  +LA+QH    +++     + V
Sbjct: 289 PMMRLVQGDVGCGKTLVAALAALRAIAHGHQVALMAPTELLAEQHATNFRQWFAPLGLSV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+  +  IA G+  +++GTHALFQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQTQMAAIAAGEVDMVVGTHALFQEQVQFADLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I   R 
Sbjct: 409 ALWEKGEAQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIADTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++++R++   L E ++AYW+C  IEE      ++      +L +      IA++HGRM 
Sbjct: 469 QQILDRVRHACLEEKRQAYWVCTLIEESDLLEAQAAEVTAETLIQQLPELRIALVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DK+ VM  FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 ATDKQRVMAQFKAGEVDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLS+ +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AIASHCVLLYKSPLSQTAQRRLQVLRDSNDGFVIAQRDLEIRGPGEMLGTRQTGNAEFRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +L+   ++ A+H+ +  P     R    R L    +Y+ A
Sbjct: 649 ADLLRDQALIPEVQRIARHLHSAYP--QHARALIERWLPAGSRYSNA 693


>gi|229524689|ref|ZP_04414094.1| ATP-dependent DNA helicase RecG [Vibrio cholerae bv. albensis
           VL426]
 gi|229338270|gb|EEO03287.1| ATP-dependent DNA helicase RecG [Vibrio cholerae bv. albensis
           VL426]
          Length = 692

 Score =  588 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 261/675 (38%), Positives = 389/675 (57%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFFNF-TAAMKNNFVEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + ++HP Y F          P +  VY    GL     + +  +AL+ L    + E
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDQQ--MTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAI 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+ + + M+R++QGDVG
Sbjct: 239 RSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 RETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++   
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLETQAAAETAEELQRKLPEVKIGLVHGRMKQAEKQAVMQAF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+H
Sbjct: 539 KNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 APLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLVP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI  + P 
Sbjct: 659 QVQRIARHIHERYPQ 673


>gi|237797799|ref|ZP_04586260.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331020649|gb|EGI00706.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 691

 Score =  588 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 251/694 (36%), Positives = 394/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG   +  L+K+            D+LF+ P  + DR     I  +   +   
Sbjct: 8   SVTALKGVGDAMAEKLAKV------GLENLQDVLFHLPLRYQDRTRIVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+ ++L +      + +A   +H+P    D +        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + +  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGDVG
Sbjct: 240 RESLRSQRAPALPLAKKLPKQFLANLGFTPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +    
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K      
Sbjct: 360 RVTSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM  ++K ++M  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPVEKAAIMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 QGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPQHVSPL--LDRWLRHGQQYGQ 690


>gi|295095240|emb|CBK84330.1| ATP-dependent DNA helicase RecG [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 693

 Score =  588 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 256/689 (37%), Positives = 380/689 (55%), Gaps = 26/689 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL++  GVG   S  L+KI            DLL + P  + DR    K
Sbjct: 1   MKGRLLDAI--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTQLYK 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      T+ G +  + +     RR     ++DGTG +T+ FF     M KN    G
Sbjct: 53  IGDLLPAIYATVEGEVL-NCNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSSPELQETLTPVYPTTEGIKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTCAINELLPPELAQ--GMMSLPEALRTLHRPPPTLQLVDLESGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++   ++  K+L ++PF PT +Q     +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSQRDELKDKLLASLPFKPTGAQARVTAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGLQQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 SDIIDRVRNACTHEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQSFKQGELHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AIASHCVLLYKAPLSKTAQMRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTS 675
           A      +++   ++ A+HI  + P+  +
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYPEQAA 677


>gi|194430068|ref|ZP_03062573.1| ATP-dependent DNA helicase RecG [Escherichia coli B171]
 gi|260846563|ref|YP_003224341.1| ATP-dependent DNA helicase RecG [Escherichia coli O103:H2 str.
           12009]
 gi|194411895|gb|EDX28212.1| ATP-dependent DNA helicase RecG [Escherichia coli B171]
 gi|257761710|dbj|BAI33207.1| ATP-dependent DNA helicase RecG [Escherichia coli O103:H2 str.
           12009]
 gi|323160737|gb|EFZ46673.1| ATP-dependent DNA helicase RecG [Escherichia coli E128010]
          Length = 693

 Score =  588 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 258/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF  T +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKQTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|260770798|ref|ZP_05879727.1| ATP-dependent DNA helicase RecG [Vibrio furnissii CIP 102972]
 gi|260614035|gb|EEX39225.1| ATP-dependent DNA helicase RecG [Vibrio furnissii CIP 102972]
 gi|315178840|gb|ADT85754.1| ATP-dependent DNA helicase RecG [Vibrio furnissii NCTC 11218]
          Length = 703

 Score =  588 bits (1516), Expect = e-166,   Method: Composition-based stats.
 Identities = 260/685 (37%), Positives = 395/685 (57%), Gaps = 26/685 (3%)

Query: 4   SFLNPLFA--PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
            F++ L +  PLS+  GVG K +  L KI            DLLF+ P  + DR     I
Sbjct: 10  EFMSQLLSAIPLSSLSGVGAKVAEKLEKI------GLNSVQDLLFHLPLRYEDRTRVYPI 63

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            ++       + G +    +    +R+   + ++DG G +TL FF     M KN F +G+
Sbjct: 64  IKLHPGLWAAVQGKVMAVDT-TFGRRKMLTVKISDGNGTLTLRFFNFTAGM-KNNFADGK 121

Query: 122 KITVTGKIKKLKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
            +   G+IK+    + ++HP Y F          P +  VY    GL     + +  +AL
Sbjct: 122 LVHAYGEIKRGNGGLEIIHPDYKFFAPAQNPDVEPNLTPVYPTTDGLRQLTLRNLTDQAL 181

Query: 180 SRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDEL 233
           + L    + E +   L   +   ++A+A + IH P    D     E   PA+ RL  +EL
Sbjct: 182 ALLDKAAVQELLPSGLYDHQ--ITLAQALHTIHRPPADIDLSLFDEGRHPAQIRLIMEEL 239

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA  +++L +R + ++++ +P+    ++ Q++L  +PFSPT++Q   +++I  D+++ + 
Sbjct: 240 LAQNLSMLAVRSKGQQDVALPLPETHQLKQQLLAQLPFSPTQAQARVVREIEADLAKPHP 299

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M+R++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V 
Sbjct: 300 MMRLVQGDVGSGKTLVAALAAVRALEHGYQVALMAPTELLAEQHALNFANWFERMGIPVG 359

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    +   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+
Sbjct: 360 WLAGKLKGKAKEAELARIASGEVKMVVGTHALFQEHVVFDHLSLVIIDEQHRFGVHQRLE 419

Query: 414 LTQ----KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L +    +   PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  +  
Sbjct: 420 LREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSIIDELPPGRTPIQTVAIPDTKRA 479

Query: 470 EVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSD 527
           ++IER++   L+EGK+AYW+C  I+E +    ++  +    L       +I ++HGRM  
Sbjct: 480 DIIERVRHACLTEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDLNIGLVHGRMKP 539

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K++VM +FK+    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG 
Sbjct: 540 AEKQAVMQAFKDNQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGS 599

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C+LLYH PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA
Sbjct: 600 VASHCVLLYHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIA 659

Query: 648 QPELHDSLLEIARKDAKHILTQDPD 672
                  L+   ++ A+HI  Q PD
Sbjct: 660 DLVRDQRLIPEVQRIARHIHEQYPD 684


>gi|148825722|ref|YP_001290475.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae PittEE]
 gi|229846915|ref|ZP_04467021.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           7P49H1]
 gi|148715882|gb|ABQ98092.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           PittEE]
 gi|229809999|gb|EEP45719.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           7P49H1]
          Length = 693

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 255/688 (37%), Positives = 389/688 (56%), Gaps = 26/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLLF+ P  + DR     
Sbjct: 1   MSLELLDSV--PLTSLSGVGAAISNKLAKI------GIHNLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +  E+  TI G I Q       +R    + L+DGT +I L FF     M +N F  G
Sbjct: 53  IANLRPEQYFTIEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++K+ +    + HP Y  +  N+  V    +  +YS   GL  +  +K+  +A
Sbjct: 111 VRVKAFGEVKRGRYMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E +  +    +   S+ EA  ++H P      E       PA++RL ++E
Sbjct: 171 LALLDKVQIAEILPNEFNPHQ--YSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +  
Sbjct: 229 LLAHNLAMQKVRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRQWFEPFGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKSRQAELEKIKTGTVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R 
Sbjct: 409 MLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
            E++       ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM 
Sbjct: 469 AEIVMRVKNACVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +
Sbjct: 589 STASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
           A       ++   +  AK ++ + PDL 
Sbjct: 649 ANLMRDRKMIPTVQHYAKSLIQKYPDLA 676


>gi|67924795|ref|ZP_00518195.1| ATP-dependent DNA helicase RecG [Crocosphaera watsonii WH 8501]
 gi|67853363|gb|EAM48722.1| ATP-dependent DNA helicase RecG [Crocosphaera watsonii WH 8501]
          Length = 821

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 241/688 (35%), Positives = 387/688 (56%), Gaps = 29/688 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   LST   VG      L ++            DLLFY+P   ID   +  I  +    
Sbjct: 124 LDQSLSTLAEVGSSRGDLLKRL------GLYTVKDLLFYYPRDHIDYARQVSICHLVAGE 177

Query: 69  IVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEM--------LKNVF 117
            VTI G + + + F   K +   I   +L D TG+I L  F+              K  +
Sbjct: 178 TVTIVGTVKRCNCFTSPKNKKLSIFELILKDNTGQIKLNRFFAGARFTNRGWQERQKRFY 237

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFK 172
             G  +  +G +K+ +  + + +P     +S       +    +  VY L  G+  DL +
Sbjct: 238 PVGAVVAASGLVKQNRYGVTLENPEIEVLDSLGSSIDSLKIGRVFPVYPLTEGVGADLIR 297

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           K I+ +L  +  + + + + L ++     + EA N IH P      E  + AR RL +DE
Sbjct: 298 KAIIASLEAIKQIRDPLPRILREEYGLIGLKEAINNIHFPESP---ELLAHARRRLVFDE 354

Query: 233 LLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
               Q+  L  R++ K+         +GK+ ++  + +PFS T +Q+  I +IL+D++  
Sbjct: 355 FFYLQLGFLQRRQEQKQIHNSAVFTPQGKLIEQFNQILPFSLTNAQQQVINEILEDLNSV 414

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVG+GKT+VA+ A+ AA+++  QA +MAP  +LA+QHY  +  +     + 
Sbjct: 415 TPMNRLVQGDVGAGKTIVAVFAILAALQSSYQAALMAPTEVLAEQHYRKLVPWFNQLYLP 474

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++TG+  +A R +   ++  G+  +++GTHAL QD + + KL LV++DEQHRFGVQQR
Sbjct: 475 VELLTGSTKKAKREEIHRQLITGELPLLVGTHALIQDPVNFQKLGLVVIDEQHRFGVQQR 534

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            KL  K  +PHVL MTATPIPRTL LT  GD+D+S+I E P GR+ I+T  +      + 
Sbjct: 535 AKLLAKGKSPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQAIQTTALTGKERTQA 594

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDID 529
            + ++  +++G++ Y I P IEE ++ + ++ VE    L E      +I ++HGRMS  +
Sbjct: 595 YDLIRREVAQGRQVYIIFPMIEESEKLDVKAAVEEHEKLSEKVFPDFNIGLLHGRMSSAE 654

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+ V+ +F++   +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   
Sbjct: 655 KDEVLTAFRDNEYQIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGSHK 714

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+     + ++  RLSVL+ ++DGF I+E DL+ R  G +LG +QSG+P F +A  
Sbjct: 715 SYCLLMSSSK-TPDAKQRLSVLEQSQDGFFISEMDLRFRGPGTVLGTRQSGLPDFALASL 773

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVR 677
                +LE+AR  A+ I+  D +L  + 
Sbjct: 774 VEDQEVLELARLAAEKIIVADKNLGGLP 801


>gi|152989714|ref|YP_001351438.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa PA7]
 gi|150964872|gb|ABR86897.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa PA7]
          Length = 691

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 256/694 (36%), Positives = 388/694 (55%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L+++            D+LF+ P  + DR     I  +       
Sbjct: 8   PVTALKGVGAALAEKLARV------GLETLQDILFHLPLRYQDRTRVTAIGALRPGADAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G ++  +   + +RR   + L DG+G ++L F++      K+    G  +   G+++ 
Sbjct: 62  VEGVVAS-ADVVMGRRRSLLVRLQDGSGTLSLRFYHFSQAQ-KDGLKRGTHLRCYGEVRP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y   N  +       +  +Y    GL+    +++  +AL+ L    LP+
Sbjct: 120 GASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQRLRQLSQQALALLGPSSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLLM 243
           W+  +L +      + +A   +H P    D E  +  R     RLA++ELL  Q++L  +
Sbjct: 180 WLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    +    ++ Q+ L N+ F PT +Q     +I  D++Q   MLR++QGDVG
Sbjct: 240 REAVRSQAAPRLPPARRLPQQFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT+VA +A   A+EAG Q  +MAP  ILA+QH+    K+ Q   I V  + G +    
Sbjct: 300 AGKTVVAALAALQAIEAGYQVALMAPTEILAEQHFVNFGKWLQPLGIEVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----AT 419
           R  ALERI  G   +++GTHALFQD +++ +L L I+DEQHRFGVQQRL L QK      
Sbjct: 360 RAAALERIGDGAP-MVVGTHALFQDEVKFKRLALAIIDEQHRFGVQQRLALRQKGVDGRL 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EVIER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   DK  VM++FK
Sbjct: 479 REGRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYHP
Sbjct: 539 EGMLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGFLIAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRERLGIMRETSDGFLIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L   P   S   +  R L +  QY +
Sbjct: 659 VRDAAQSLLAHWPQHVSPLLE--RWLRHGQQYGQ 690


>gi|85373852|ref|YP_457914.1| DNA helicase [Erythrobacter litoralis HTCC2594]
 gi|84786935|gb|ABC63117.1| DNA helicase [Erythrobacter litoralis HTCC2594]
          Length = 687

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 277/702 (39%), Positives = 417/702 (59%), Gaps = 17/702 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LN LFA + T  GVG K    L K+        TR  D+ ++ P  F+ R     
Sbjct: 1   MRPDILNALFAEVDTLDGVGPKLKKPLDKL------GLTRVRDVAYHLPDRFVTRRAVQN 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFE 119
           + E  E   + I    ++H   +   R P+++   D  G +  L +F R +   K +   
Sbjct: 55  LDEAGEGEQIVIQLTPTEHRGPRNPGRGPHRVFAQDAIGNVCALTYFGRASYSAKKLLPV 114

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V GK+++  + + +VHP ++     +    L E VY+L  GL+      ++ +AL
Sbjct: 115 GETRWVAGKLERYGDMLQIVHPDHVLEEGGESLQRLCEPVYALSEGLTQPKVAGLVSQAL 174

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           ++LP LPEWIE    +K+ +P  ++A        K         AR+RLAYDELLA  +A
Sbjct: 175 TKLPELPEWIEPGQFEKEQWPIWSDAL-------KLAHKSENGSARDRLAYDELLANSLA 227

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+L+R   ++  G  +  +G    K+   +PF  T +QE +I++I +DM Q+  MLR+LQ
Sbjct: 228 LMLVRADNRQRKGRALVGDGSRIGKL--QLPFPLTGAQERSIREITEDMGQEAPMLRLLQ 285

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VAL  M  AVEAG QA ++AP  ILA+QH+E ++   + T   V ++TG  
Sbjct: 286 GDVGAGKTVVALETMLVAVEAGAQAALLAPTEILARQHFETLRDMARPTGTEVALLTGRD 345

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKA 418
               R   L  +  G   I++GTHA+FQD++QY  L LV++DEQHRFGV QRL+L  +  
Sbjct: 346 KGRARESILMGLLDGSIDIVVGTHAIFQDAVQYRDLGLVVIDEQHRFGVAQRLQLARKGR 405

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L MTATPIPRTL L   G++D+S++ E P GR+ I T ++  +R+ EV+E +   
Sbjct: 406 RTPHTLAMTATPIPRTLTLAQYGEMDVSRLDELPPGRQAIDTRVVGQDRLAEVVEGVGRH 465

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           + +G++AYW+CP + + +  +  +   R+ +L E F  ++ ++HG++    K++ M+ F 
Sbjct: 466 IDKGQQAYWVCPMVRDSETVDIAAAEARYAALKERFGDTVVLVHGQLEPAAKDAAMERFA 525

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G  KLL+ATTVIEVG+DV  A++++IE AE FGLAQLHQLRGRVGRG E S C+LL   
Sbjct: 526 SGEAKLLVATTVIEVGVDVPAATLMVIEQAERFGLAQLHQLRGRVGRGSEKSVCLLLRGE 585

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            LS     RL++++ T+DGF IAEEDL+ R  GE+LG +QSG   F +A  E    LL +
Sbjct: 586 ALSDTGRKRLALMRETQDGFRIAEEDLELRGGGELLGTRQSGDTPFRVADLEQIQRLLPV 645

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A  DA+ ++ +D  L+S RG++ R+LLYL++ +   Q +R G
Sbjct: 646 AHADARLLIERDGGLSSERGEAARVLLYLFERDYGVQLLRGG 687


>gi|218556215|ref|YP_002389128.1| ATP-dependent DNA helicase RecG [Escherichia coli IAI1]
 gi|218362983|emb|CAR00621.1| ATP-dependent DNA helicase [Escherichia coli IAI1]
          Length = 693

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 258/707 (36%), Positives = 387/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF  T +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKQTGAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|188492293|ref|ZP_02999563.1| ATP-dependent DNA helicase RecG [Escherichia coli 53638]
 gi|188487492|gb|EDU62595.1| ATP-dependent DNA helicase RecG [Escherichia coli 53638]
          Length = 693

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 257/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +D++   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDLALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ + +  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVLFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPEAERYSNA 693


>gi|213970706|ref|ZP_03398831.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           T1]
 gi|301382593|ref|ZP_07231011.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059230|ref|ZP_07250771.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           K40]
 gi|213924540|gb|EEB58110.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           T1]
          Length = 691

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 253/694 (36%), Positives = 394/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+K+            D+LF+ P  + DR     I  +S      
Sbjct: 8   SVTALKGVGEAMAEKLAKV------GLENLQDVLFHLPLRYQDRTRIVPIGALSPGHDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPPPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+ ++L +      + +A   +H+P    D +        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGDVG
Sbjct: 240 RESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +    
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVDVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K      
Sbjct: 360 RVTSLEQIATGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCKAAETTYEELTSALGEVRVGLIHGRMKPAEKAAIMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 QGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPQHVSPL--LDRWLRHGQQYGQ 690


>gi|157163133|ref|YP_001460451.1| ATP-dependent DNA helicase RecG [Escherichia coli HS]
 gi|170018118|ref|YP_001723072.1| ATP-dependent DNA helicase RecG [Escherichia coli ATCC 8739]
 gi|157068813|gb|ABV08068.1| ATP-dependent DNA helicase RecG [Escherichia coli HS]
 gi|169753046|gb|ACA75745.1| ATP-dependent DNA helicase RecG [Escherichia coli ATCC 8739]
 gi|323939588|gb|EGB35794.1| ATP-dependent DNA helicase RecG [Escherichia coli E482]
          Length = 693

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 257/707 (36%), Positives = 386/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   S  L+KI      N     DLL + P  + DR +   
Sbjct: 1   MKGRLLDAV--PLSSLTGVGAALSNKLAKI------NLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGVYATVEGEVL-NCNISFGGRRMMTCQISDGSGILTMRFFNFSAAM-KNSLAAG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L   +   ++ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LDLLDTCAIEELLPPEL--SQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L  +PF PT +Q   + +I +D++   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDLALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ + +  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVLFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++   ++EG++AYW+C  IEE +    ++    +  L       ++ ++HGRM 
Sbjct: 469 TDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYP--QQAKALIERWMPETERYSNA 693


>gi|163750716|ref|ZP_02157952.1| ATP-dependent DNA helicase RecG [Shewanella benthica KT99]
 gi|161329560|gb|EDQ00552.1| ATP-dependent DNA helicase RecG [Shewanella benthica KT99]
          Length = 691

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 261/696 (37%), Positives = 389/696 (55%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV KK +  L+K+            DLLF+ P  + DR     I+ +      T
Sbjct: 8   PITDLKGVAKKMAERLAKL------GIHTIQDLLFHLPLRYEDRTQIYPIASLYPGTYGT 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG +TL FF       KN    G  I   G+I++
Sbjct: 62  IEAVIQSSQIIQ-GRKRMMTCTVRDDTGYLTLRFFNFSVAQ-KNGLVNGMTIRAYGEIRR 119

Query: 132 LKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
            K++  ++HP Y     ++  V    +  VY    GL    + K+  +AL+ L    L E
Sbjct: 120 GKHQAEIIHPEYKLIHGDTDLVMSDTLTPVYPTTEGLKQASWIKLTDQALAMLDEGGLQE 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAK---DFE-WTSPARERLAYDELLAGQIALLLM 243
            +   L Q  +  S+  A  ++H P       D E    PA++RL  +ELLA  +++L +
Sbjct: 180 LLPPQL-QPNNL-SLNAALQLLHRPNNQVSQFDLEQGHHPAQQRLIQEELLAHNLSMLKL 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++  ++  + +   GK+ +  L+ +PF PT +Q+    +I  D+ + + M+R++QGDVG
Sbjct: 238 RQRSNRDHAVSLAATGKLLKPFLKALPFKPTGAQQRVGVEICGDLEKSSPMMRLVQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH E    + +   + V  + G +    
Sbjct: 298 SGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAENFALWFEPLGLKVGWLAGKLKGKA 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R ++L+ I  G A+IIIGTHA+FQ+ + +  L L+I+DEQHRFGV QRL L +    +  
Sbjct: 358 RAQSLQDIESGAANIIIGTHAIFQEQVVFNNLALIIIDEQHRFGVHQRLSLREKGIKQGF 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV +   R +EVIER++   
Sbjct: 418 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAVADIRRNEVIERVRHAA 477

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             +G++ YW+C  IEE +    ++  +    L        I +IHGRM   +K+++M  F
Sbjct: 478 TYDGRQTYWVCTLIEESEVLECQAAEDTAAELTLALPELKIGLIHGRMKSAEKKAIMAEF 537

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 538 KSGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLMYK 597

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RL VL+++ DGF+IA++DL+ R  GE+LG KQ+G+    IA      +L+ 
Sbjct: 598 APLSPTATKRLGVLRSSNDGFIIAQKDLEIRGPGEVLGTKQTGIADMKIADLVRDQALIP 657

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A HI+ Q PD  +V G   R L    QY +A
Sbjct: 658 HIQKLAVHIMEQVPD--NVDGIVQRWLGDREQYVQA 691


>gi|298484810|ref|ZP_07002910.1| ATP-dependent DNA helicase RecG [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160664|gb|EFI01685.1| ATP-dependent DNA helicase RecG [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 691

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 251/694 (36%), Positives = 392/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+++            D+LF+ P  + DR     I  +   +   
Sbjct: 8   SVTALKGVGEAMAEKLARV------GLETLQDVLFHLPLRYQDRTRVVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+  +L +      + +A   +H+P    D E        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGDVG
Sbjct: 240 RESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +    
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K      
Sbjct: 360 RATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  I E +E   ++    +  L        + +IHGRM   +K ++M  FK
Sbjct: 479 AEGRQAYWVCTLIVESEELTCKAAETTYEELSSALGEVRVGLIHGRMKPAEKAAIMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 QGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQAMLERWPQHVSPL--LDRWLRHGQQYGQ 690


>gi|83593063|ref|YP_426815.1| ATP-dependent DNA helicase RecG [Rhodospirillum rubrum ATCC 11170]
 gi|83575977|gb|ABC22528.1| ATP-dependent DNA helicase RecG [Rhodospirillum rubrum ATCC 11170]
          Length = 703

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 295/708 (41%), Positives = 444/708 (62%), Gaps = 13/708 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRPS L+PLF PL++ +G GK  +  ++++I        + +DLL++ PS  +DR + P 
Sbjct: 1   MRPSLLDPLFRPLTSLKGAGKTMAPLIARLI-----GGDKVVDLLWHLPSGLVDRRFSPL 55

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+E  +  +VT+T  +  H     +   PY+++  D +G +TL+FF+ +   L ++   G
Sbjct: 56  IAEAPDGVVVTLTVVVEAHQEPPPRSPSPYRVVCRDASGFVTLVFFHGRARYLNDLLPVG 115

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               ++GK+++      +VHP ++   ++      +E VY L  G++  +  ++I +AL 
Sbjct: 116 ETRVISGKVERFGGAPQIVHPTHVVPLAEAEAVCRVEPVYPLSGGVAGKVLARLIAQALD 175

Query: 181 RLPVL----PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            +P       EWI+  L  ++ +P   +A   +H P +A+D     PAR RLAYDELLA 
Sbjct: 176 DIPDPAAWPDEWIDAPLKAREGWPGWIDALRAVHAPEEAEDLRPDHPARRRLAYDELLAT 235

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q+ALLL+R+  +   G PI   G +  K+L  +PF+ T +Q  ++ +I  DM+   RMLR
Sbjct: 236 QLALLLVRRAARTVRGRPIVGTGALRAKVLAALPFALTGAQSRSLAEIDGDMASPARMLR 295

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VAL+ M  AVEAG QA +MAP  ILA+QH E +     +  + + ++T
Sbjct: 296 LLQGDVGSGKTVVALLTMLTAVEAGAQAALMAPTEILARQHIETLAPLCASAGVRLGLLT 355

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G      R   LE +A G+  I++GTHALFQD + +  L +V+VDEQHRFGV QRL L+ 
Sbjct: 356 GRDKGRARAALLEALAAGEIDILVGTHALFQDDVVFAALAVVVVDEQHRFGVHQRLALSD 415

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K  A  VL+MTATPIPRTL LT  GD+DIS++ EKP GR P  T ++PI+R+D+VI  + 
Sbjct: 416 KGRAVDVLVMTATPIPRTLTLTHYGDMDISRLDEKPPGRLPADTRVLPIDRLDDVIAAVA 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVER----FNSLHEHFTSSIAIIHGRMSDIDKES 532
             +  G K YW+CP IE+ +  +  + V+R     + L       + ++HGRM   +K++
Sbjct: 476 RAIDGGAKVYWVCPLIEDSETGDMAAAVDRQALLADRLGPRLGPRVGLVHGRMKPGEKDA 535

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM++F      LL+ATTVIEVG++V  A++++IE+AE FGLAQLHQLRGR+GRG   S+C
Sbjct: 536 VMEAFSGNGLDLLVATTVIEVGVNVPSATVMVIEHAERFGLAQLHQLRGRIGRGGGRSTC 595

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY PPL + +  RL  ++ T+DGF IAEEDL+ R  GE+LG +QSG+P F +  P L 
Sbjct: 596 LLLYAPPLGETARARLETMRRTDDGFEIAEEDLRLRGAGEVLGTRQSGLPVFRLIDPLLA 655

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           + LL IARK A+ I+  DPDL    G ++R+LLYL++ + A + +R+G
Sbjct: 656 EDLLAIARKQAEVIVETDPDLAGPHGAALRVLLYLFERDAAVRTLRSG 703


>gi|261341740|ref|ZP_05969598.1| hypothetical protein ENTCAN_08218 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316107|gb|EFC55045.1| ATP-dependent DNA helicase RecG [Enterobacter cancerogenus ATCC
           35316]
          Length = 693

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 256/689 (37%), Positives = 380/689 (55%), Gaps = 26/689 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL++  GVG   S  L+KI            DLL + P  + DR    K
Sbjct: 1   MKGRLLDAI--PLNSLTGVGAAQSGKLAKI------GLHTVQDLLLHLPLRYEDRTQLYK 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      T+ G +  + +     RR     ++DGTG +T+ FF     M KN    G
Sbjct: 53  IGDLLPAIYATVEGEVL-NCNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSMPELQETLTPVYPTTEGIKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P       D E  T PA+ RL  +E
Sbjct: 171 LELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPTLQLIDLESGTHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++   ++  K+L ++PF PT +Q     +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRFHAQPLSQRDELKDKLLASLPFKPTGAQARVTAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRAWFAPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGLQQGYHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE      ++    +  L       ++ ++HGRM 
Sbjct: 469 SDIIDRVRNACMQEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FK G   LLIATTVIEVG+DV +AS++I+EN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKQGELHLLIATTVIEVGVDVPNASLMIVENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKAPLSKTAQMRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTS 675
           A      +++   ++ A+HI  + P+  +
Sbjct: 649 ADLMRDQAMIPEVQRLARHIHERYPEQAA 677


>gi|28867305|ref|NP_789924.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28850539|gb|AAO53619.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 691

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 253/694 (36%), Positives = 395/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+K+            D+LF+ P  + DR     I  +S  +   
Sbjct: 8   SVTALKGVGEAMAEKLAKV------GLENLQDVLFHLPLRYQDRTRIVPIGALSPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPPPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+ ++L +      + +A   +H+P    D +        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGDVG
Sbjct: 240 RESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +    
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVDVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K      
Sbjct: 360 RVTSLEQIATGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGIGGLM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCKAAETTYEELTSALGEVRVGLIHGRMKHAEKAAIMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 QGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPQHVSPL--LDRWLRHGQQYGQ 690


>gi|114049159|ref|YP_739709.1| ATP-dependent DNA helicase RecG [Shewanella sp. MR-7]
 gi|113890601|gb|ABI44652.1| ATP-dependent DNA helicase RecG [Shewanella sp. MR-7]
          Length = 696

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 256/696 (36%), Positives = 399/696 (57%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV K+ +  L+K+        T   DLLF+ P  + DR     I+ +      T
Sbjct: 13  PITDLKGVAKRVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGNYGT 66

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG ++L FF       +N    G  I   G+I++
Sbjct: 67  IEAEIQSTQIIQ-GRKRMLVCNVRDNTGSMSLRFFNFSMAQ-RNAMQNGLMIRAYGEIRR 124

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             ++  +VHP Y I +  +D++    +  +Y    GL    + K+  +AL  L    L E
Sbjct: 125 GNHQAEIVHPEYKIVYPGEDIHLSDTLTPIYPTTEGLKQASWIKLTEQALELLEDGGLTE 184

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLLM 243
            +  +L  + +  S+ +A   +H P       D E    PA++RL  +ELLA  +++L +
Sbjct: 185 LLPANL--QPNSMSLKQALQTLHRPHAGISQFDLELGQHPAQQRLVQEELLAHNLSMLRL 242

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++   +  + ++  G++    L ++PF PT +QE  + +I +D+ Q + M+R++QGDVG
Sbjct: 243 RQRSNLDAAVTMHASGQLLNPFLTSLPFKPTGAQERVVAEIGKDLEQPHPMMRLVQGDVG 302

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +    
Sbjct: 303 SGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAANFAAWFEPLGLKVGWLAGKLKGKA 362

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QR+ L +    +  
Sbjct: 363 RAQSLADIESGDAQMVIGTHAIFQQQVTFNKLALIIIDEQHRFGVHQRMGLREKGINQGF 422

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R +EV+ER++  V
Sbjct: 423 HPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDSRRNEVLERVRNSV 482

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++ ++AYW+C  IEE +    ++  +    L +     SI ++HGRM   +K+ +M  F
Sbjct: 483 VTDKRQAYWVCTLIEESEVLECQAAEDTAEELRQALPELSIGLVHGRMKSAEKQKIMADF 542

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K GT  LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 543 KAGTIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 602

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS+ +  RL+VL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA      +L+ 
Sbjct: 603 APLSQTASQRLNVLRQSNDGFVIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQALIP 662

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H+++Q P+  +V     R L +  QY +A
Sbjct: 663 HIQKLASHVMSQAPE--AVDAIIHRWLGHRQQYVQA 696


>gi|330977359|gb|EGH77309.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 691

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 251/694 (36%), Positives = 392/694 (56%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+K+            D+LF+ P  + DR     I  +   +   
Sbjct: 8   SVTALKGVGEAMAEKLAKV------GLETLQDVLFHLPLRYQDRTRIVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLAIYHPEYRAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+ ++L +      + +A   +H+P    D E        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVEELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QG VG
Sbjct: 240 RESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGGVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   + V  + G +    
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL L +K      
Sbjct: 360 RVASLEQIAGGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLM 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MT TPIPRTL +++  D+D S + E P GR P+ TV++  +R  EV+ER++   
Sbjct: 419 CPHQLIMTPTPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   +K ++M  FK
Sbjct: 479 AEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMAEFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHP
Sbjct: 539 QGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L + P   S      R L +  QY +
Sbjct: 659 VRDAAQALLERWPQHVSPL--LDRWLRHGQQYGQ 690


>gi|269137385|ref|YP_003294085.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda EIB202]
 gi|267983045|gb|ACY82874.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda EIB202]
 gi|304557486|gb|ADM40150.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda FL6-60]
          Length = 693

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 253/707 (35%), Positives = 388/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL++  GVG   +  L+K+            DLL + P  + DR    +
Sbjct: 1   MQGRLLDAV--PLTSLSGVGASQAGKLAKL------GLVTIQDLLLHLPLRYEDRTRLYR 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+    +VT+ G + + +     +RR     ++DG+G +TL FF     M KN    G
Sbjct: 53  IGELQPGMVVTVEGEVLR-TDVAFGRRRMLTSQISDGSGLLTLRFFNFSAAM-KNSLAPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++   G+IK+  +   ++HP Y              +  VY    G+     +K+  +A
Sbjct: 111 KRVLAYGEIKRGHHGGEIIHPEYRMQGDDAAPALQEALTPVYPTTEGVRQATLRKLSDQA 170

Query: 179 LSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDE 232
           L+ L +  +PE +   L  K+   S+ +A   +H P      E       PA+ RL  +E
Sbjct: 171 LALLDITPIPELLPDAL--KQGLLSLPDALRTLHRPPPDIHQEDLAQGRHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   + +  +  + Q+ L  +PF+PT +Q   + DI  DM++  
Sbjct: 229 LLAHHLSMLAVRAGNQRHRALALATDDHLKQRFLAALPFTPTTAQRRVLGDIEADMAKSV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVG GKTLVA +A   A+  G Q  +MAP  +LA+QH    +++     + V
Sbjct: 289 PMMRLVQGDVGCGKTLVAALAALRAIAHGHQVALMAPTELLAEQHAANFRQWFAPLGLSV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+  +  IA G+  +++GTHALFQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQTQMAAIAAGEVDMVVGTHALFQEQVQFAGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I   R 
Sbjct: 409 ALWEKGEAQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIADTRR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++++R++   L E ++AYW+C  IEE      ++      +L +      IA++HGRM 
Sbjct: 469 QQILDRVRHACLEEKRQAYWVCTLIEESDLLEAQAAEATAETLMQQLPELRIALVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DK+ VM  FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 AADKQRVMTQFKAGEVDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLS+ +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AIASHCVLLYKAPLSQTAQRRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAEFRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      +L+   ++ A+H+ +  P     R    R L    +Y+ A
Sbjct: 649 ADLLRDQALIPEVQRIARHLHSAYP--QHARALIERWLPAGSRYSNA 693


>gi|145633450|ref|ZP_01789180.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           3655]
 gi|144986013|gb|EDJ92615.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           3655]
          Length = 693

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 255/688 (37%), Positives = 390/688 (56%), Gaps = 26/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLLF+ P  + DR     
Sbjct: 1   MSLELLDAV--PLTSLSGVGAAISNKLAKI------GIHNLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +  E+ VTI G I Q       +     + L+DGT +I L FF     M +N F  G
Sbjct: 53  IANLRPEQYVTIEG-IVQTCEIAFGRSPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++K+ ++   + HP Y  +  N+  V    +  +YS   GL  +  +K+  +A
Sbjct: 111 VRVKAFGEVKRGRHMPEIHHPEYQIVLDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E +  +    +   S+ EA  ++H P      E       PA++RL ++E
Sbjct: 171 LALLDKVQIAEILPNEFNPHQ--YSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +  
Sbjct: 229 LLAHNLAMQKVRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVLDIEQDLIKDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVNQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R 
Sbjct: 409 MLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
            E++       ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM 
Sbjct: 469 TEIVMRVKNACVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +
Sbjct: 589 STASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
           A       ++   +  AK ++ + PDL 
Sbjct: 649 ANLMRDRKMIPTVQFYAKSLIQKYPDLA 676


>gi|90412685|ref|ZP_01220686.1| putative ATP-dependent DNA helicase RecG [Photobacterium profundum
           3TCK]
 gi|90326260|gb|EAS42679.1| putative ATP-dependent DNA helicase RecG [Photobacterium profundum
           3TCK]
          Length = 697

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 255/699 (36%), Positives = 393/699 (56%), Gaps = 30/699 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+   GVG K +  L K+        T   DLLF+ P  + DR     I++    + + +
Sbjct: 11  LTELSGVGAKMAEKLEKV------GLTSVQDLLFHLPLRYEDRTRIWPIAQAMPGQHIAV 64

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +  +SS    KRR   + + D +G  TL FF     M +N   EG+++   G+IK+ 
Sbjct: 65  QGEVL-NSSITFGKRRMLTVRIADNSGSATLRFFNFNAAM-QNNLAEGKQVKAFGEIKRG 122

Query: 133 KNRIIMVHPHYIFHNSQDVNFPL--IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPEW 188
           K  + ++HP Y              +  VY    GL     + +  +AL+ L    + E 
Sbjct: 123 KFGLEIIHPDYSVFAESASLTGEENLTPVYPTTEGLRQLTLRNLTDQALNLLDKSAVTEL 182

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLMR 244
           + + L  ++   ++ +A +++H P      +       PA+ RL  +ELLA  +++L +R
Sbjct: 183 LPEGLYDRQ--MTMTQALHVMHRPTPDVSLDQLEAGKHPAQHRLILEELLAQNLSMLAVR 240

Query: 245 KQFKKEIGIPI----NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            + ++    P+    N    + +K+L ++PFSPT +Q+  + DI  D+ +   M+R++QG
Sbjct: 241 SKSQQHSAWPLSACNNPADNLKEKLLASLPFSPTNAQQRVMADIEADLIKPLPMMRLVQG 300

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA +A   A++ G Q  +MAP  +LA+QH +   ++     I V  + G + 
Sbjct: 301 DVGSGKTLVAALAALHAIQHGFQVALMAPTELLAEQHVQNFAQWFNPMDIQVGWMAGKLK 360

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418
              R   L RI  G+A +++GTHALFQD + +  L LVI+DEQHRFGV QRL+L +K   
Sbjct: 361 GKARETELARIESGEAKMVVGTHALFQDHVTFKNLALVIIDEQHRFGVHQRLELREKGAN 420

Query: 419 --TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV +P  R   ++ER++
Sbjct: 421 EGRYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVALPDTRRAAIVERIR 480

Query: 477 VVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
                EG++AYW+C  I+E +    ++  +  + L       ++ ++HGRM   +K+ +M
Sbjct: 481 SACQNEGRQAYWVCTLIDESEVLEAQAASDTADELTAQLPELNVGLVHGRMKAAEKQEIM 540

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK G  +LL+ATTVIEVG+DV +AS+++IEN E  GLAQLHQLRGRVGRG+  S C+L
Sbjct: 541 RRFKAGELQLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGKVASHCVL 600

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LYH PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       
Sbjct: 601 LYHAPLSKTAQKRLGVLRDSSDGFVIAQRDLEIRGPGELLGTKQTGIADFKIADLVRDQH 660

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           L+   +K A++I  Q P+  + +    R L     Y+ A
Sbjct: 661 LIPQVQKLARYIHEQYPN--NAKAIVQRWLGQRENYSNA 697


>gi|326403948|ref|YP_004284030.1| ATP-dependent DNA helicase RecG [Acidiphilium multivorum AIU301]
 gi|325050810|dbj|BAJ81148.1| ATP-dependent DNA helicase RecG [Acidiphilium multivorum AIU301]
          Length = 687

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 265/697 (38%), Positives = 421/697 (60%), Gaps = 16/697 (2%)

Query: 4   SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
             L P  A L++  G+G K +  +++             DLLF+ P  FIDR  +  ++E
Sbjct: 7   ESLAPFRAELASLPGIGPKLAALIAR-----AVGGPSVGDLLFHLPLHFIDRSRQSTLAE 61

Query: 64  ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                + T+   + +H +   ++ +P+++++ D +G   ++ F+         F  G K+
Sbjct: 62  AEPGSVATVMVEVVRHEA-PARRGQPHRVVIRDASGFGEVVLFHPGRL---GQFPVGAKL 117

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            ++GKI++  +R  + HP Y+   +Q  + P IE V  L  GL+  +  + +  AL+RLP
Sbjct: 118 LLSGKIERFADRPTLPHPDYVLPAAQAASLPAIEPVRGLTAGLTARVMARAVDGALARLP 177

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            LPEW    +LQK+ +P    A   +H P    D         RLAYDELLA Q+A  L+
Sbjct: 178 ELPEWQLPSVLQKRRWPGFTAALRTLHAPESMPDDRPA----RRLAYDELLARQLAFALI 233

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + ++  G     +G++    L    F+PT +Q +A+ +I  D++  +RMLR+LQGDVG
Sbjct: 234 RARRRRRPGRAFTGDGRLRAAALARFGFAPTDAQAAALAEIDADLAAPHRMLRLLQGDVG 293

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKTLVA +AM   VEAG QA ++AP  +LA+QH   ++K      + V ++TG++  A 
Sbjct: 294 AGKTLVATLAMLRVVEAGAQAALLAPTELLARQHLATLEKLC---PVPVALLTGSLRAAE 350

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR  L  +A G   I++GTHA+FQ S+ ++ L L ++DEQHRFGV+QR  L  K +A  +
Sbjct: 351 RRLVLAGLADGSIPIVVGTHAIFQKSVAFHDLGLAVIDEQHRFGVEQRFALGAKGSATDM 410

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL+L+  G++ +S+I  KPAGRKPI+T + P  R++E++  +  ++  G 
Sbjct: 411 LVMTATPIPRTLLLSHWGEMSVSRILAKPAGRKPIRTTLHPAGRMEEIVAAVARMIRRGG 470

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           + YW+CP + E +  +  +   RF +L E F   + + HGR     + + ++ F  G   
Sbjct: 471 RVYWVCPLVAESEAVDIAAAEARFAALAERFGDRVVLAHGRQPIEIRAAALERFARGEAD 530

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG+DV +A++++IE A+ FGLAQLHQLRGRVGRG   S C+LL+   LS+ 
Sbjct: 531 ILVSTTVIEVGVDVPEANVMVIERADRFGLAQLHQLRGRVGRGAAASFCLLLHGDELSQA 590

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL++L+ TEDGF IA+ED + R  G+ILG KQSG+P + +A  E  + L+ +A+KDA
Sbjct: 591 ARRRLAILRETEDGFRIADEDFRLRGGGDILGAKQSGLPGYRLADAERDEDLIPMAQKDA 650

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             +L  DP L + RG++ R+LL+L++ + A + + AG
Sbjct: 651 TLLLDTDPHLETPRGRAARVLLHLFEQDRAIRALVAG 687


>gi|167854894|ref|ZP_02477670.1| ATP-dependent DNA helicase recG [Haemophilus parasuis 29755]
 gi|167853961|gb|EDS25199.1| ATP-dependent DNA helicase recG [Haemophilus parasuis 29755]
          Length = 693

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 262/686 (38%), Positives = 380/686 (55%), Gaps = 26/686 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL+   GVG   S  LS+I            DLLF+ P  + DR     
Sbjct: 1   MNQQLLDGV--PLTALSGVGAAISEKLSRI------GINNVQDLLFHLPLRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++  E   T+ G++ Q +  Q  +R      ++DGT +ITL FF     M KN    G
Sbjct: 53  IADVRPESFATVEGFV-QLTEVQFGRRPILSTTISDGTSKITLKFFNFNAGM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G+IK+ +    M HP Y  I  N        +  +Y    GL     +K+  +A
Sbjct: 111 VRVKAFGEIKRGRFMAEMHHPEYQIIRGNQPLELAETLTPIYPTTEGLKQASLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDE 232
           L+ L    + E +  +    K   S+ EA  ++H P  +   E       PA++RL ++E
Sbjct: 171 LALLERVQVAELLPDEFNPHK--YSLKEALQLLHRPPPSVSSELLDKGEHPAQKRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++    P+  +  + Q+ L  +PF PT +Q     +I QD+++  
Sbjct: 229 LLAHNLAMQQVRMGVQQHFAEPLCYQTDLKQRFLATLPFQPTNAQSRVTAEIEQDLAKPF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHAHNFANWLRPFGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R   LE I +G   +IIGTHALFQD ++++ L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDQVEFHHLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R 
Sbjct: 409 TLREKGAKGDVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           DEV+ R+     +E ++AYW+C  I+E +    ++       L        I ++HGRM 
Sbjct: 469 DEVVRRVYQACKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+++M  FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG
Sbjct: 529 PQEKQAIMAEFKAADIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y  PL K S  RL VL++++DGF+IAE+DL+ R  GE+LG KQ+GM +F I
Sbjct: 589 ATASHCVLMYKAPLGKISTKRLQVLRDSQDGFVIAEKDLEIRGPGEVLGTKQTGMAEFKI 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A       ++ + +  AK +  + PD
Sbjct: 649 ANLMRDRKMIPLVQSYAKQLTLKYPD 674


>gi|223042049|ref|ZP_03612226.1| ATP-dependent DNA helicase [Actinobacillus minor 202]
 gi|223017166|gb|EEF15601.1| ATP-dependent DNA helicase [Actinobacillus minor 202]
          Length = 693

 Score =  586 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 263/696 (37%), Positives = 388/696 (55%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  L +I            DLLF+ P  + DR     I++I  E   T
Sbjct: 10  PLTALSGVGAAIAEKLGRI------GIHNVQDLLFHLPMRYEDRTRITPIADIRPESFAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I GY+ Q +  Q  +R    + L+D T +I L FF     M KN F  G ++   G+IK+
Sbjct: 64  IEGYV-QLTEVQFGRRPILSVTLSDSTSKIMLKFFNFNAGM-KNSFATGVRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
            +    + HP Y  I +N        +  +YS   GL     +K+  +AL+ L    + E
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQASLRKLTEQALAVLNNVQVAE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            +  +    +   S+ EA  ++H P  +   E       PA++RL ++ELLA  +A+  +
Sbjct: 182 LLPNEYNPHQ--YSLKEALQLLHRPPPSITPEILEKGEHPAQKRLIFEELLAHNLAMQQL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   K++   P+  +  +  + L  +PF PT++Q     DI +D++Q + M+R++QGDVG
Sbjct: 240 RLGVKQQFAEPLRYQTDLKSRFLAGLPFQPTQAQSRVTADIERDLAQNSPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   LE I +G   +IIGTHALFQ++++++ L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RNAQLEAIKNGDVQMIIGTHALFQENVEFHDLALVIIDEQHRFGVHQRLTLREKGAKGDV 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV+I   R  E+++R+    
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEERRAEIVQRVYQAC 479

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+++M  F
Sbjct: 480 KNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQAIMAEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 540 KAANLDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGSTASHCVLMYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL V+++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++ 
Sbjct: 600 PPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVADLMRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           + ++ AK I+ ++P L        R L    +Y  A
Sbjct: 660 LVQRYAKQIIVENPPLA--EALIKRWLNDKTEYTNA 693


>gi|20807935|ref|NP_623106.1| RecG-like helicase [Thermoanaerobacter tengcongensis MB4]
 gi|20516504|gb|AAM24710.1| RecG-like helicase [Thermoanaerobacter tengcongensis MB4]
          Length = 682

 Score =  586 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 257/694 (37%), Positives = 397/694 (57%), Gaps = 21/694 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG K +    K+            DL+FY P  + DR    KI ++    
Sbjct: 3   LDLDIQYVKGVGPKRAKLFKKL------GIDMVKDLIFYFPRDYEDRSEIVKIEDLIVGE 56

Query: 69  IVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             T   YI+      +  +    KI + DGTG + L+++ +    +KN F  G +  ++G
Sbjct: 57  KQTFKAYIAGSAREVKTSRVVITKIPVKDGTGAVELVWYNQ--PYMKNNFKIGEEYIISG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVL 185
           K++    ++++ +P         ++N   I  VY L  GL+ ++ +K+I  AL   L  +
Sbjct: 115 KLQFKYGQLVVENPVLEKSEEDLNLNTGRIVPVYGLTEGLTQNILRKVIFNALSEYLDEV 174

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E+ E++ L++K   ++ EA   IH P   KD E  + A+ RL Y EL   Q+AL L++K
Sbjct: 175 EEFFEEEFLREKGLMNLKEALLNIHFP---KDEEKLARAKYRLKYQELFLLQLALFLVKK 231

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             K++ GI         +  + N+PF  T +Q   +K+I+ DM+    M R++QGDVGSG
Sbjct: 232 SVKEKRGIRFRKVD--IKPFVSNLPFKLTSAQMKVLKEIILDMASDKVMNRLIQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  AM  A + G Q  +MAP  ILA+QHY+ +++  + T I + +++G++  + R+
Sbjct: 290 KTIVAAFAMYIAAKNGYQVAMMAPTEILAKQHYKTLEEIFKGTDIRIGLLSGSLSPSGRK 349

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE+I  G+  +++GTHAL ++ + +  L L I DEQHRFGV+QR  L QK   P VL+
Sbjct: 350 EVLEKIEKGEYDVVVGTHALIEEDVSFKNLGLCITDEQHRFGVRQRALLAQKGENPDVLV 409

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L   GD+DIS I + P GRK +KT +IP +   +  E     + +G++ 
Sbjct: 410 MTATPIPRTLALILYGDLDISIIDQLPPGRKRVKTYVIPSSMRKKAYEFAIKEVKKGRQV 469

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE  +    S    +  +++     + + ++HG+MSD DKE +M++F  G   
Sbjct: 470 YVVCPLIEESDKIKAASAEIVYREIYKDAFKEARVGLLHGKMSDSDKERIMEAFVRGEID 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++I+ENAE FGLAQLHQLRGRVGR E  S CIL+ + P S+ 
Sbjct: 530 ILVSTTVIEVGVNVPNATVMIVENAERFGLAQLHQLRGRVGRSEFQSYCILINYSP-SET 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL VL  T DGF IAE DL+ R  GE LG KQ G+P+F IA       +L+  +KD 
Sbjct: 589 AKKRLEVLARTSDGFKIAERDLEIRGPGEFLGEKQHGLPEFKIANLFEDIDILKRVQKDV 648

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
           + +L +DP L   R   +R +L    Y++    I
Sbjct: 649 ESLLEEDPKLE--RHPKLRQVLISEFYDKVKDII 680


>gi|261868130|ref|YP_003256052.1| ATP-dependent DNA helicase RecG [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413462|gb|ACX82833.1| ATP-dependent DNA helicase RecG [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 693

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 257/686 (37%), Positives = 381/686 (55%), Gaps = 26/686 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL+   GVG   +  L K+            DLLF+ P  + DR     
Sbjct: 1   MSTQLLDAI--PLTAISGVGAAVAEKLGKL------GIFNLQDLLFHLPLRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++  E+  TI G + Q S  Q  +R    + L+DGT ++ L FF     M KN    G
Sbjct: 53  IADLQAEQYATIEG-VVQSSEVQFGRRPMLMVYLSDGTAKLALRFFNFNAGM-KNSLQPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++++ +    + HP Y  I  N   V    +  +Y    GL     +K+I +A
Sbjct: 111 ARVKAFGEVRRGRFMAEIHHPEYQIIHDNKPLVLAETLTPIYPATEGLKQTALRKLIAQA 170

Query: 179 LSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDE 232
           L  L   P  E +  +      F  +  A   +HNP          E   PA++RL ++E
Sbjct: 171 LLVLDKTPIAELLPAE-CNPHPF-DLKFAIQFLHNPPPDVSLTTLEEGRHPAQQRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   +     P++ +  +  + L  +PF PT +Q    +DI +D++Q  
Sbjct: 229 LLAYNLAMQKVRSGIQANFAEPLSYQSDLKARFLAQLPFQPTNAQLRVTEDIERDVAQPY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHAVNFRRWFEPLGIQV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R   LE+I  G   +++GTHALFQ+ +++++L LVIVDEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKQRVAELEKIKSGAVQMVVGTHALFQEEVEFHRLSLVIVDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI T+ I  +R 
Sbjct: 409 MLREKGNQAGVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTIAISEDRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
            E+IER+ V    E ++AYW+C  I+E +    ++       L +      I ++HGRM 
Sbjct: 469 AEIIERVNVACTQEKRQAYWVCTLIDESEMLEAQAAEAVAEDLRKILPHLRIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM  FK     LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PNEKQAVMAQFKLAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL V+++T+DGF+I+E+DL+ R  GE+LG KQ+G+ +F +
Sbjct: 589 STASFCVLMYKPPLGKISQKRLQVMRDTQDGFVISEKDLEIRGPGEVLGTKQTGITEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A       +L   +  AK ++ + P 
Sbjct: 649 ANLMRDRKMLPTVQFYAKQLVQKYPQ 674


>gi|15600538|ref|NP_254032.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa PAO1]
 gi|107104447|ref|ZP_01368365.1| hypothetical protein PaerPA_01005524 [Pseudomonas aeruginosa PACS2]
 gi|116053492|ref|YP_793819.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894448|ref|YP_002443318.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa LESB58]
 gi|296392205|ref|ZP_06881680.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa PAb1]
 gi|313106773|ref|ZP_07792989.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa 39016]
 gi|9951664|gb|AAG08730.1|AE004946_14 ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa PAO1]
 gi|115588713|gb|ABJ14728.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218774677|emb|CAW30494.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa LESB58]
 gi|310879491|gb|EFQ38085.1| ATP-dependent DNA helicase RecG [Pseudomonas aeruginosa 39016]
          Length = 691

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 254/694 (36%), Positives = 388/694 (55%), Gaps = 24/694 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L+++            D+LF+ P  + DR     I  +       
Sbjct: 8   PVTALKGVGAALAEKLARV------GLETLQDILFHLPLRYQDRTRVTAIGALRPGADAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G ++  +   + +RR   + L DG+G ++L F++      K+    G  +   G+++ 
Sbjct: 62  VEGVVAG-ADVVMGRRRSLLVRLQDGSGTLSLRFYHFSQAQ-KDGLKRGTHLRCYGEVRP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y   N  +       +  +Y    GL+    +++  +AL+ L    LP+
Sbjct: 120 GASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQRLRQLSQQALAMLGPSSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLLM 243
           W+  +L +      + +A   +H P    D E  +  R     RLA++ELL  Q++L  +
Sbjct: 180 WLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    +    ++ ++ L N+ F PT +Q     +I  D++Q   MLR++QGDVG
Sbjct: 240 REAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT+VA +A   A+EAG Q  +MAP  ILA+QH+    K+ Q   I V  + G +    
Sbjct: 300 AGKTVVAALAALQAIEAGYQVALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----AT 419
           R  ALERI  G   +++GTHALFQD +++ +L L I+DEQHRFGVQQRL L QK      
Sbjct: 360 RAAALERIGDGAP-MVVGTHALFQDEVKFKRLALAIIDEQHRFGVQQRLALRQKGVDGRL 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R  EVIER++   
Sbjct: 419 CPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAAC 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            EG++AYW+C  IEE +E   ++    +  L        + +IHGRM   DK  VM++FK
Sbjct: 479 REGRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFK 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYHP
Sbjct: 539 EGMLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHP 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL  
Sbjct: 599 PLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPA 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            R  A+ +L   P   S   +  R L +  QY +
Sbjct: 659 VRDAAQSLLAHWPQHVSPLLE--RWLRHGQQYGQ 690


>gi|145630714|ref|ZP_01786493.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           R3021]
 gi|144983840|gb|EDJ91290.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           R3021]
          Length = 693

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 254/688 (36%), Positives = 391/688 (56%), Gaps = 26/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLLF+ P  + DR     
Sbjct: 1   MSLELLDAV--PLTSLSGVGATISNKLAKI------GIHNLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +  E+  TI G I Q       +R    + L+DGT +I L FF     M +N F  G
Sbjct: 53  IANLRPEQYFTIEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++K+ ++   + HP Y  +  N+  V    +  +YS   GL  +  +K+  +A
Sbjct: 111 VRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E +  +    +   S+ EA  ++H P      E       PA++RL ++E
Sbjct: 171 LALLDKVQIAEILPNEFNPHQ--YSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +  
Sbjct: 229 LLAHNLAMQKVRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R 
Sbjct: 409 MLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
            E++       ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM 
Sbjct: 469 TEIVMRVKNACVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ +M +FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PQEKQDIMAAFKNAELNLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +
Sbjct: 589 STASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
           A       ++   +  AK ++ + PDL 
Sbjct: 649 ANLMRDRKMIPTVQHYAKSLIQKYPDLA 676


>gi|206901942|ref|YP_002250862.1| ATP-dependent DNA helicase RecG [Dictyoglomus thermophilum H-6-12]
 gi|206741045|gb|ACI20103.1| ATP-dependent DNA helicase RecG [Dictyoglomus thermophilum H-6-12]
          Length = 778

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 242/689 (35%), Positives = 378/689 (54%), Gaps = 20/689 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+   +GVG   +  L+K+            DL+ Y+P  + DR    KISE+     VT
Sbjct: 96  PVQFLKGVGPHRAKLLNKL------EIYTIYDLITYYPRDYDDRSKLKKISELKPGEKVT 149

Query: 72  ITGYISQHSSFQ--LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I   I  +   +   +K    K  L DGTG +  +++ +K   +K    +G  + ++G++
Sbjct: 150 IKVKIIDYEETKTLYKKIPIIKAKLTDGTGIVYGVWYGQK--YIKQALPQGTDVLISGEV 207

Query: 130 KKLKNRIIMVHPHYIFHNSQD---VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-L 185
           K++   I   +P Y   + +D   +N   I  +YSL +GL+  + +KII +AL+   + L
Sbjct: 208 KRVLKHIEFENPEYEVLDEEDKEFLNVGRIVPIYSLTSGLTQKVLRKIIYDALTDYSIFL 267

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            + + K L +K +      +    H P         S   +R+A++EL   Q+ L   RK
Sbjct: 268 EDPLPKYLREKYNLMDKPVSIWEKHFPTSFLTMASAS---KRIAFEELFFLQLNLAEKRK 324

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + +K        + ++ ++ L ++PF  TK+QE   ++I +D+S    M R+LQGDVGSG
Sbjct: 325 EIEKLSAPVFKTDSELVERFLNSLPFKLTKAQEKVWEEIKKDLSSGRPMHRLLQGDVGSG 384

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT++A +A   A + G Q   M P  ILA+QHY  +KK  +   I + ++T + P+  + 
Sbjct: 385 KTVIAALAAILAYDNGYQTAFMVPTEILAEQHYNRLKKIFEPLGIRIALLTSSTPKKEKT 444

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
                +A G+  I+IGTHAL Q+ + + KL LVI+DEQHRFGV QR KL +K   PH+L+
Sbjct: 445 YIYLDLAEGKLPIVIGTHALIQEEVTFKKLGLVIIDEQHRFGVIQRAKLWKKGENPHLLV 504

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPR+L L   G++DIS I E P GRKP+ T +       +V   ++  + +GK+A
Sbjct: 505 MTATPIPRSLALVLYGELDISIIDELPPGRKPVITYLFSKRERKKVYSFVEKEIMKGKQA 564

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           + +CP IEE ++    S  + +  L + F    I +IHG +   ++  +M+ F+NG  ++
Sbjct: 565 FVVCPLIEESEKLEAESAKKLYEELKKFFPQFKIGLIHGLVPSEERNRIMEEFQNGEIQI 624

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+ATTVIEVG+D+ +ASI++IE+A  FGLAQLHQLRGRVGRG E + C L+      +++
Sbjct: 625 LVATTVIEVGVDIPNASIMVIEDAHRFGLAQLHQLRGRVGRGSEQAYCFLIADLK-GEDA 683

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL V+  T DGF+IA +DL+ R  GE  G +Q G    LI        L EIAR +A 
Sbjct: 684 TERLKVMVETNDGFVIANKDLEIRGPGEFFGTRQHGALNSLIVDLTKDMKLFEIARNEAF 743

Query: 665 HILTQDPD-LTSVRGQSIRILLYLYQYNE 692
            ++  + + L+      I   L  Y   E
Sbjct: 744 ELMRYENERLSEYEKNLINKWLNRYLKGE 772


>gi|158320474|ref|YP_001512981.1| ATP-dependent DNA helicase RecG [Alkaliphilus oremlandii OhILAs]
 gi|158140673|gb|ABW18985.1| ATP-dependent DNA helicase RecG [Alkaliphilus oremlandii OhILAs]
          Length = 678

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 243/688 (35%), Positives = 388/688 (56%), Gaps = 18/688 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++ L   +   +GVG K +  L+K+      N   F D++++ P  + DR    KI+++ 
Sbjct: 1   MDILDRDIQYLKGVGPKKAYLLNKL------NIKTFKDMIWHFPRDYEDRGNIRKIAQLI 54

Query: 66  EERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                T  GYI   +     K+     K ++ D TG++ ++FF +    LK     G+++
Sbjct: 55  PGEKTTFYGYIYGEAEISKPKKNMSLIKFIVKDETGQVEIVFFNK--VYLKKAITSGQRV 112

Query: 124 TVTGKIKKLKNRIIMVHPHYI-FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
            + G++KK    + +V+P     +  ++     I  +Y    GLS +   KI  + +  +
Sbjct: 113 MINGEVKKTFKGMQIVNPVLEKINQEEEEGRHGIVPIYPSTEGLSQNEILKIQRDMIRVV 172

Query: 183 -PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              + E++  +L++K     I  A   IH P   K       A+ RL ++E L  Q+ LL
Sbjct: 173 KESIVEYLPDELIKKHKLCHIQFALENIHFPNSVKSL---KIAKYRLVFEEFLFLQLGLL 229

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            ++K   KE    +  + +  ++ + ++PF+ T +Q+  +K+I QD+ +   M R++QGD
Sbjct: 230 KIKKDHTKEKEGIVLKKKEGIEEFIESLPFTLTAAQDKVVKEICQDLERDIPMNRLVQGD 289

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA+IA+  AV  G Q  +MAP  ILA+QHY  +        I V ++ G++ +
Sbjct: 290 VGSGKTIVAIIALFKAVINGYQGAMMAPTEILAEQHYLSLTDLLSPFGIHVGLLVGSLSK 349

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           + + K L  I  G+ +I++GTHAL Q+ + +  L LVI DEQHRFGV+QR  LT K   P
Sbjct: 350 SEKNKILNGIETGEINIVVGTHALIQEGVNFANLSLVITDEQHRFGVRQRSTLTSKGNNP 409

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           HVL+MTATPIPRTL L   GD+DIS I   P GRK IKT     N+  E+   L   L E
Sbjct: 410 HVLVMTATPIPRTLALILYGDLDISIIDHLPPGRKCIKTYSRTSNKRKEIYNFLGKQLDE 469

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
           G++AY +CP +EE +  + +S  E    L         + ++HG+M   DKE +M +FK 
Sbjct: 470 GRQAYVVCPLVEESEAIDAQSATEIAEELSCDLLKGYKVGLLHGKMPPKDKEEIMKAFKE 529

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L++TTVIEVG++V +A+++++ENAE FGLAQLHQLRGRVGRG   S CIL+ +  
Sbjct: 530 GNIQVLVSTTVIEVGVNVPNATMMVVENAERFGLAQLHQLRGRVGRGSHQSYCILINNSK 589

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            S+ S  R+++++ T DGF+I+E+DL+ R  GE  G +Q G+P+  IA    H S+L+  
Sbjct: 590 -SEISKARMAIMEKTTDGFVISEKDLELRGPGEFFGTRQHGLPELKIANLFKHLSVLKTV 648

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYL 687
           + + + I  +D  LT  +   ++  + L
Sbjct: 649 QAEVESIAEEDFSLTLDKYPILKRKIEL 676


>gi|317121767|ref|YP_004101770.1| ATP-dependent DNA helicase RecG [Thermaerobacter marianensis DSM
           12885]
 gi|315591747|gb|ADU51043.1| ATP-dependent DNA helicase RecG [Thermaerobacter marianensis DSM
           12885]
          Length = 924

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 243/710 (34%), Positives = 370/710 (52%), Gaps = 27/710 (3%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P+ L P   PLS   GVG++ +  L+++            DLL++ P  + DR     I+
Sbjct: 226 PAALTP-ATPLSRLPGVGRRQAQRLARL------GLHTAGDLLWHLPRRYEDRSTWKPIA 278

Query: 63  EISEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            +    + T+ G +        +  R   +I ++DG+G +  +FF +           GR
Sbjct: 279 RLVPGEVATVQGVVVDAQRVPTRTGRTVVRITVSDGSGRLDAVFFNQ--PFRLQQLVPGR 336

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNS---QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            + ++G++        M HP          + V+   I  VY    GL     +++  + 
Sbjct: 337 TVLLSGRVDAGYRGWQMDHPEVEPVEGGEGEPVHTARIVPVYPATEGLHQRWLRQLAWQV 396

Query: 179 LSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           +  L   +PE +   L         + A   IH P    D      AR RLA++E    Q
Sbjct: 397 VGALAGQVPEILPAGLRAALGLVDRSTALRHIHFPP---DAAAWQAARRRLAFEEWFVMQ 453

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL  +R Q ++E G     +G    + L ++PF  T +Q   + +I  DM     M R+
Sbjct: 454 VALARVRSQQQQEPGRAHRPDGPRVARFLASLPFELTPAQRRVLDEIRADMEAPRPMRRL 513

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  AM  AVE+G QA +MAP  ILA+QH   ++       I V  + G
Sbjct: 514 VQGDVGSGKTVVAAWAMVKAVESGAQAALMAPTEILAEQHARRLQSLLAPAGIPVVQLVG 573

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++P A R + LE +A G+  +++GTHAL QD +++  L LVI+DEQHRFGV+QR  L  K
Sbjct: 574 SLPAADRERVLEGLASGRWPVVVGTHALIQDDVRFRDLSLVIIDEQHRFGVRQRALLQGK 633

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P +L+MTATPIPRTL LT  GD+D+S I + P GR+P++T+ +   +     + L  
Sbjct: 634 GQVPDLLVMTATPIPRTLALTLYGDLDVSVIDQLPPGRQPVRTLWLRGRQRRRAYDLLAA 693

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSL--------HEHFTSSIAIIHGRMSDID 529
            ++ G++ Y +CP ++E       +      ++          +    + I+HGRM   +
Sbjct: 694 RVAAGEQGYVVCPLVDEPAGGAGGAGDAEQKAVTTWAEFVARRYPRLRVGILHGRMPGAE 753

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE VM +F+     +L+ATTVIEVG+DV +A+++IIE A+ FGLAQLHQLRGRVGRG + 
Sbjct: 754 KERVMRAFERRALDVLVATTVIEVGVDVPNATVMIIEGADRFGLAQLHQLRGRVGRGSKE 813

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S CIL+  P  +     RL  L  ++ GF IAE DL+ R  G+  G +Q G+P   IA P
Sbjct: 814 SLCILVADPA-TAEGRLRLEALCRSQSGFEIAEFDLELRGPGDFFGTRQHGLPALRIADP 872

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
                LL  AR+ A+ +L +DP L +   Q++R  + L +Y E     RA
Sbjct: 873 IRDAGLLRQAREAARRLLEEDPQLAAPEHQALRWEV-LDRYGEFLAEARA 921


>gi|113968698|ref|YP_732491.1| ATP-dependent DNA helicase RecG [Shewanella sp. MR-4]
 gi|113883382|gb|ABI37434.1| ATP-dependent DNA helicase RecG [Shewanella sp. MR-4]
          Length = 696

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 255/696 (36%), Positives = 397/696 (57%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV K+ +  L+K+        T   DLLF+ P  + DR     I+ +      T
Sbjct: 13  PITDLKGVAKRVAEKLAKL------GITTVQDLLFHLPLRYEDRTQIYPIAALMPGNYGT 66

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  ++R     + D TG ++L FF       +N    G  I   G+I++
Sbjct: 67  IEAEIQSTQIIQ-GRKRMLVCNVRDNTGSMSLRFFNFSMAQ-RNAMQNGLMIRAYGEIRR 124

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             ++  +VHP Y I +  +D++    +  +Y    GL    + K+  +AL  L    L E
Sbjct: 125 GNHQAEIVHPEYKIVYPGEDIHLSDTLTPIYPTTEGLKQASWIKLTEQALELLEDGGLTE 184

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDELLAGQIALLLM 243
            +  +L  + +  S+ +A   +H P       D E    PA++RL  +ELLA  +++L +
Sbjct: 185 LLPTNL--QPNSMSLKQALQTLHRPHAGISQFDLELGQHPAQQRLVQEELLAHNLSMLRL 242

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++   +  + +   G++    L ++PF PT +Q+  + +I +D+ Q + M+R++QGDVG
Sbjct: 243 RQRSNLDAAVTMLASGQLLNPFLASLPFKPTGAQQRVVAEIGKDLEQPHPMMRLVQGDVG 302

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +    
Sbjct: 303 SGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAANFAAWFEPLGLKVGWLAGKLKGKA 362

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R ++L  I  G A ++IGTHA+FQ  + + KL L+I+DEQHRFGV QR+ L +    +  
Sbjct: 363 RAQSLADIESGDAQMVIGTHAIFQQQVTFNKLALIIIDEQHRFGVHQRMGLREKGINQGF 422

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP +R +EV+ER++  V
Sbjct: 423 HPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDSRRNEVLERVRNSV 482

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++ ++AYW+C  IEE +    ++  +    L +     SI ++HGRM   +K+ +M  F
Sbjct: 483 VTDKRQAYWVCTLIEESEVLECQAAEDTAEELRQALPELSIGLVHGRMKSAEKQKIMADF 542

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K GT  LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 543 KAGTIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 602

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS+ +  RL+VL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +  IA      +L+ 
Sbjct: 603 APLSQTASQRLNVLRQSNDGFVIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQALIP 662

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H++ Q P+  +V     R L +  QY +A
Sbjct: 663 HIQKLASHVMAQAPE--AVDAIIHRWLGHRQQYVQA 696


>gi|87199996|ref|YP_497253.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135677|gb|ABD26419.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 685

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 281/702 (40%), Positives = 417/702 (59%), Gaps = 19/702 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA  S+ +GVG   +  L K+        TR  D  ++ P  F+ R     
Sbjct: 1   MRPDLLNPLFAEASSLKGVGPGLARPLEKL------GLTRVKDFAYHLPDRFVLRRAIAN 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFE 119
           + E S      I   ++     Q   R P++++  D +G  + L +F R +   K     
Sbjct: 55  LDEASVGE--QIVVALTPRDYRQSAGRGPFRVMAEDESGSFVALTYFGRASYTAKKQLPL 112

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V G++ +      +VHP ++  +S  +   L E VY L  GL+    + ++ ++L
Sbjct: 113 GEKRWVAGRLDQFGQTWQIVHPDHVSDDSAGMLGQLNEPVYPLSEGLTQGRLQGLVHQSL 172

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           + LP LPEWIE  L Q+  +P+  EA                  AR+RLAYDELLA  +A
Sbjct: 173 AHLPQLPEWIEPGLAQRMDWPAWHEAL-------PLAHKGEHKAARDRLAYDELLANSLA 225

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+L+R+  +   G P++ +G +  K+  N+PF  T +Q+ +I +I  D++Q   MLR+LQ
Sbjct: 226 LILVRESNRSRQGTPLHGDGHLRAKL--NLPFDLTGAQKRSIAEIEGDVAQGAPMLRLLQ 283

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT VAL AM  AVE+G QA ++AP  ILA+QH + + K    T + + ++TG  
Sbjct: 284 GDVGSGKTAVALNAMLIAVESGAQAALLAPTEILARQHADTLSKMAVGTGVNIALLTGRD 343

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   L  +  G   I +GTHA+FQ+++ Y  L LV++DEQHRFGV QRL LTQKA 
Sbjct: 344 KGRARESILMGLLDGSIDICVGTHAIFQEAVAYRNLALVVIDEQHRFGVGQRLMLTQKAR 403

Query: 420 A-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L MTATPIPRTL L   G++D+S++ E P GR+ I T ++   R+ +VIE +   
Sbjct: 404 RTPHCLAMTATPIPRTLTLAQYGEMDVSRLDEMPPGRQAIDTRVVAQERLADVIEGVGRH 463

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +++G +AYW+CP + E++  +  +   RF +L E F   + ++HG++    K++ M+ F 
Sbjct: 464 IAKGAQAYWVCPMVREQENDDMAAAEARFAALKERFGDMVVMVHGQLRPEVKDAAMERFA 523

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  KLL+ATTVIEVG+DV +A++++IE AE FGLAQLHQLRGRVGRG + S+C+LL   
Sbjct: 524 RGDAKLLVATTVIEVGVDVPNATLMVIEQAERFGLAQLHQLRGRVGRGSQQSTCLLLRGD 583

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            LS+    RL++++ T+DGF +AEEDL+ R  GE+LG +QSG   F +A  E    LL +
Sbjct: 584 ALSETGRERLALMRETQDGFRLAEEDLRLRGGGELLGTRQSGETPFKVADFEQIAKLLPL 643

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A  DA+ ++ +D  L+S RGQ+ R+LLYL++ +   Q +R G
Sbjct: 644 AHDDARLLMERDGGLSSPRGQAARVLLYLFERDWGVQLLRGG 685


>gi|91774408|ref|YP_544164.1| ATP-dependent DNA helicase RecG [Methylobacillus flagellatus KT]
 gi|91708395|gb|ABE48323.1| ATP-dependent DNA helicase RecG [Methylobacillus flagellatus KT]
          Length = 686

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 256/688 (37%), Positives = 382/688 (55%), Gaps = 17/688 (2%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           P  + L   +G+       L+K+  C          LL + P  ++D      I ++   
Sbjct: 6   PANSKLDGIKGMTPALQGRLAKLGICNWQG------LLLHMPLRYLDETRITAIRDLHTG 59

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
               + G I  H+  Q + R+     L D TG++ L F +     +     EGR I   G
Sbjct: 60  EQAQVQGEIV-HTEVQYRPRKALVCRLRDDTGQLVLRFLHFYPSQVA-TLKEGRYIRAFG 117

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           +++       MVHP      +       +   Y    GLS  + +K I  AL  +  + E
Sbjct: 118 EVRGGFFGWEMVHPQCRQVEAHAPVAEALTPFYPTTAGLSQAVLRKWISWALEHVD-IAE 176

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
            + +++    S PS +E+ +++H+P              PA  RLA+DELLA Q+++   
Sbjct: 177 ILPQEIYSGLSLPSFSESLHLLHHPTPDTALRSLESRDHPAWRRLAFDELLAQQLSMRKH 236

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
             + + +    +     +   +LR++PF+ T++Q+    +I +D+ Q   M R+LQGDVG
Sbjct: 237 HARRRHQGAPALAPSRTLVTALLRSLPFTLTQAQQRVAVEICRDLEQPYPMQRLLQGDVG 296

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   AVE G QA IMAP  ILA+QHY+ ++ +     I V  ++G+  +  
Sbjct: 297 SGKTIVAAMAALQAVENGWQAAIMAPTEILAEQHYQKMQTWLAPLGIRVAWLSGSQGKKE 356

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ +  + +G A ++IGTHALFQ+ + + +L L IVDEQHRFGVQQRL L QK   PH 
Sbjct: 357 RREMMAAVENGVAQLVIGTHALFQEQVVFQRLGLAIVDEQHRFGVQQRLSLRQKGVQPHQ 416

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL ++   D+D+S I E P GR PI T ++   R DEV+ER++    EG+
Sbjct: 417 LMMSATPIPRTLSMSYFADLDVSVIDELPPGRTPIVTRLVSDARRDEVLERVQHACMEGR 476

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +AYW+CP IEE +    ++V E +  L E F    + ++HGRM   +K++VM +F  G  
Sbjct: 477 QAYWVCPLIEESEVLQLQTVTETYERLREAFPHLRVGLVHGRMKPAEKQAVMAAFSAGVT 536

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-PLS 601
           +LL+ATTVIEVG+DV +AS+++IE+AE  GLAQLHQLRGRVGRG   SSCILLY    LS
Sbjct: 537 QLLVATTVIEVGVDVPNASLMVIEHAERMGLAQLHQLRGRVGRGAAKSSCILLYQEGKLS 596

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + +  RL ++  + DGF IA+ DL  R  GE +G++QSG+P   IA  E    LLE AR 
Sbjct: 597 ETARARLRIIYESNDGFAIAQADLALRGPGEFMGVRQSGVPMLKIADLERDQELLEAARD 656

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQ 689
            A  +L + P   +      R L +  +
Sbjct: 657 IAAELLEKSP--RAAEAHLARWLGHAEE 682


>gi|218246338|ref|YP_002371709.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 8801]
 gi|218166816|gb|ACK65553.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 8801]
          Length = 819

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 243/686 (35%), Positives = 387/686 (56%), Gaps = 29/686 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PLS    VG   +  L ++            DLLFY+P   ID   +  IS ++   
Sbjct: 122 LDQPLSAIAEVGYSKAELLKRL------GLFTVKDLLFYYPRDHIDYARQVSISRLNPGE 175

Query: 69  IVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEM--------LKNVF 117
            VTI G + + + F   K +   I   +L D TG+I L  F+  T           K ++
Sbjct: 176 TVTIVGSVKRCNCFTSPKNKNLSIFELILQDNTGKIKLNRFFAGTRFTNRGWQEKQKKLY 235

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFK 172
             G  +  +G +K+ +  + + +P     +S     + +    +  VY L  G+  DL +
Sbjct: 236 PLGAIVAASGLVKQNRFGLTLDNPEIEVLDSLGSNIESLKIGRVLPVYPLTEGVPADLIR 295

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           + IV  L  +  + + +   L  +     + +A   IH P         + AR RL +DE
Sbjct: 296 RAIVACLGAIKQIRDPLPVGLRNQYGLIPLKDAIANIHFPETPALL---THARRRLVFDE 352

Query: 233 LLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
               Q+  L  R++ K          +GK+ +   + +PF  T +Q+  I +IL+D++  
Sbjct: 353 FFYLQLGFLQRRQEQKHLEKSAIFLPQGKLIENFNQLLPFKLTNAQQRVINEILEDLNSS 412

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVG+GKT+VA+ ++ AA+++G QA +MAP  +LA+QHY  +  +     + 
Sbjct: 413 TPMNRLVQGDVGAGKTIVAVFSILAAIQSGYQAALMAPTEVLAEQHYRKLVTWFNLLHLP 472

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++TG+   A RR+   ++  G+  +++GTHAL QD + + +L LV++DEQHRFGVQQR
Sbjct: 473 VELLTGSTKIAKRREIHSQLETGELPLLVGTHALIQDKVNFQRLGLVVIDEQHRFGVQQR 532

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            KL  K  +PHVL MTATPIPRTL LT  GD+D+S+I E P GR+PI+T  +      + 
Sbjct: 533 AKLLAKGQSPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQPIQTTALIGKERTQA 592

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE--HFTSSIAIIHGRMSDID 529
            + ++  +++G++AY I P IEE ++ + R+ VE    L E      +I ++HGRMS  +
Sbjct: 593 YDLIRREVAQGRQAYIIFPMIEESEKLDVRAAVEEHKKLSETVFPQFNIGLLHGRMSSSE 652

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+ ++ +F++   +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   
Sbjct: 653 KDEILTNFRDNKSQIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGSHQ 712

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+ +   + +S  RLSVL+ ++DGF I+E DL+ R  G +LG +QSG+P F +A  
Sbjct: 713 SYCLLMSNSK-TPDSRQRLSVLEQSQDGFFISEMDLRFRGPGTVLGTRQSGLPDFALASL 771

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTS 675
                +LE+AR  A+ IL  D  L  
Sbjct: 772 VEDQEILELARSAAEKILIADSHLGG 797


>gi|311277428|ref|YP_003939659.1| ATP-dependent DNA helicase RecG [Enterobacter cloacae SCF1]
 gi|308746623|gb|ADO46375.1| ATP-dependent DNA helicase RecG [Enterobacter cloacae SCF1]
          Length = 693

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 256/688 (37%), Positives = 382/688 (55%), Gaps = 30/688 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS   GVG   +  L+KI            DLL + P  + DR +   
Sbjct: 1   MQGRLLDAV--PLSALTGVGAAQTNKLAKI------GLHNVQDLLLHLPLRYEDRTHLYT 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+ G +  + +     RR     ++DGTG +T+ FF     M KN    G
Sbjct: 53  INDLLPGVYATVEGEVL-NCNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLAAG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIV 176
           +++   G+ ++ K    M+HP Y      D++ P ++     VY    G+     +K+  
Sbjct: 111 KRVLAYGEARRGKYGAEMIHPEYRVQ--GDLSTPALQETLTPVYPTTEGVRQATLRKLTD 168

Query: 177 EALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAY 230
           +AL  L    + E +  +L Q     S+ EA   +H P  +    D E    PA+ RL  
Sbjct: 169 QALDLLETCAIAELLPPELAQ--GMMSLPEALRTLHRPPPSLQLSDLESGQHPAQRRLIM 226

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           +ELLA  +++L +R   ++    P++    + Q +L  +PF PT +Q   + +I  DM+Q
Sbjct: 227 EELLAHNLSMLALRAGAQRYHAQPLSPRDNLKQALLDALPFRPTGAQARVVGEIEHDMAQ 286

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     +
Sbjct: 287 DVPMMRLVQGDVGSGKTLVAALAALRAIAHGNQVALMAPTELLAEQHANNFRAWFAPLGV 346

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V  + G      R    E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV Q
Sbjct: 347 EVGWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQ 406

Query: 411 RLKLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           RL L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I   
Sbjct: 407 RLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIADT 466

Query: 467 RIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524
           R  ++I+R++   + EG++AYW+C  IEE +    ++    +  L       +I ++HGR
Sbjct: 467 RRSDIIDRVRHACTAEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNIGLVHGR 526

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   +K++VM  FK G   LLIATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVG
Sbjct: 527 MKPAEKQAVMQGFKQGELHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVG 586

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RG   S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F
Sbjct: 587 RGAVASHCVLLYKSPLSKTAQMRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEF 646

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPD 672
            +A      +++   ++ A+HI  + P 
Sbjct: 647 KVADLLRDQAIIPDVQRIARHIHEKYPQ 674


>gi|257059384|ref|YP_003137272.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 8802]
 gi|256589550|gb|ACV00437.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 8802]
          Length = 819

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 243/686 (35%), Positives = 386/686 (56%), Gaps = 29/686 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PLS    VG   +  L ++            DLLFY+P   ID   +  IS ++   
Sbjct: 122 LDQPLSAIAEVGYSKAELLKRL------GLFTVKDLLFYYPRDHIDYARQVSISRLNPGE 175

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVF 117
            VTI G + + + F   K +   I    L D TG+I L  F+  T           K ++
Sbjct: 176 TVTIVGSVKRCNCFTSPKNKNLSIFELFLQDNTGKIKLNRFFAGTRFTNRGWQEKQKKLY 235

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFK 172
             G  +  +G +K+ +  + + +P     +S     + +    +  VY L  G+  DL +
Sbjct: 236 PLGAIVAASGLVKQNRFGLTLDNPEIEVLDSLGSNIESLKIGRVLPVYPLTEGVPADLIR 295

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           + IV  L  +  + + +   L  +     + +A   IH P         + AR RL +DE
Sbjct: 296 RAIVACLGAIKQIRDPLPVGLRNQYGLIPLKDAIANIHFPETPALL---THARRRLVFDE 352

Query: 233 LLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
               Q+  L  R++ K          +GK+ +   + +PF  T +Q+  I +IL+D++  
Sbjct: 353 FFYLQLGFLQRRQEQKHLEKSAIFLPQGKLIENFNQLLPFKLTNAQQRVINEILEDLNSS 412

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVG+GKT+VA+ ++ AA+++G QA +MAP  +LA+QHY  +  +     + 
Sbjct: 413 TPMNRLVQGDVGAGKTIVAVFSILAAIQSGYQAALMAPTEVLAEQHYRKLVTWFNLLHLP 472

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++TG+   A RR+   ++  G+  +++GTHAL QD + + +L LV++DEQHRFGVQQR
Sbjct: 473 VELLTGSTKIAKRREIHSQLETGELPLLVGTHALIQDKVNFQRLGLVVIDEQHRFGVQQR 532

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            KL  K  +PHVL MTATPIPRTL LT  GD+D+S+I E P GR+PI+T  +      + 
Sbjct: 533 AKLLAKGQSPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQPIQTTALMGKERTQA 592

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE--HFTSSIAIIHGRMSDID 529
            + ++  +++G++AY I P IEE ++ + R+ VE    L E      +I ++HGRMS  +
Sbjct: 593 YDLIRREVAQGRQAYIIFPMIEESEKLDVRAAVEEHKKLSETVFPQFNIGLLHGRMSSSE 652

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+ ++ +F++   +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   
Sbjct: 653 KDEILTNFRDNKSQIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGSHQ 712

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+ +   + +S  RLSVL+ ++DGF I+E DL+ R  G +LG +QSG+P F +A  
Sbjct: 713 SYCLLMSNSK-TPDSRQRLSVLEQSQDGFFISEMDLRFRGPGTVLGTRQSGLPDFALASL 771

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTS 675
                +LE+AR  A+ IL  D  L  
Sbjct: 772 VEDQEILELARSAAEKILIADSHLGG 797


>gi|85711928|ref|ZP_01042983.1| DNA helicase RecJ [Idiomarina baltica OS145]
 gi|85694325|gb|EAQ32268.1| DNA helicase RecJ [Idiomarina baltica OS145]
          Length = 691

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 264/694 (38%), Positives = 404/694 (58%), Gaps = 27/694 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           + PL   PL+T +GVG K +  L K+            D +F+ P+ + DR    +I+  
Sbjct: 1   MQPLSKIPLTTLKGVGDKVAKKLEKL------GLVTVNDAIFHLPARYEDRTQVYRIAYA 54

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
                      +  ++  +  ++R     + D TG +TL FF      LK  F  G  + 
Sbjct: 55  RPGVAGHFQVTV-DNADIKYGRKRMLVCRVRDETGTMTLRFFQFSAAQLKQ-FSAGTSLL 112

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           V G+++   + + ++HP Y   +S D       +  +Y    G+     +KII +ALS +
Sbjct: 113 VFGEVRAGLSGLEVIHPEYRVLSSSDAIELPDTLTPIYPTTEGVYQASLRKIIDQALSYV 172

Query: 183 --PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAG 236
               LPE + + L Q     S+ EA   +HNP K        + + PA++RLA +EL+A 
Sbjct: 173 TERALPELLPEPL-QPHDL-SLVEALKTLHNPPKDVGLAQLEQGSHPAQQRLAMEELIAH 230

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q++LL +R++ ++E    +N +  +  + L+ +PF PT +Q+  + +I  D++++  M+R
Sbjct: 231 QVSLLQLREKRQQERAHALNADPHLQSEFLKQLPFKPTAAQQRVLSEIHADLAREQPMMR 290

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVA +A  AA+E G Q  IMAP  IL++QH    +++     I V  ++
Sbjct: 291 LVQGDVGSGKTLVAALAALAAIEQGHQVAIMAPTEILSEQHALTFEQWFAPLGIEVAWLS 350

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT- 415
           G      R++ LE++A G+  +I+GTHALFQ  + Y+ L LVI+DEQHRFGV QRL+L  
Sbjct: 351 GRSKGKARQRTLEQLASGRVQLIVGTHALFQADVHYHSLALVIIDEQHRFGVHQRLQLRE 410

Query: 416 ---QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
              Q    PH L+MTATPIPRTL +T+  D+  S I E P GR PI TV+IP  R D+VI
Sbjct: 411 KGVQAGFQPHQLIMTATPIPRTLAMTAYADLATSVIDELPPGRTPITTVVIPDTRRDQVI 470

Query: 473 ERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
           ER++ V   EG++AYW+C  IEE +    ++  +    L E     ++ ++HGRM    K
Sbjct: 471 ERVREVCTHEGRQAYWVCTLIEESEVLECQAAEDTATELQEQLDGLTVGLVHGRMKADQK 530

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E+VM  FK+G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S
Sbjct: 531 EAVMSRFKSGEIDLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVAS 590

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+LLY  PLS+ +  RLSVL+++ DGF+IA+ D++ R  GE+LG +Q+G+ +  +A  E
Sbjct: 591 HCVLLYKTPLSRTATERLSVLRDSNDGFVIAQRDMEIRGYGELLGQRQTGLTQMKVADIE 650

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
             + L+  A+  A+ ++ + P+  +V     R L
Sbjct: 651 RDEVLIPEAQTVAEELIRKYPN--TVNALIARWL 682


>gi|36783701|emb|CAE12554.1| ATP-dependent DNA helicase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 703

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 396/707 (56%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR   L+ +  PL++ RGVG   +  L+KI            DLL + P  + D+     
Sbjct: 11  MRGPLLDAI--PLTSLRGVGANQAAKLAKI------GLVNLQDLLLHFPLRYEDQTRLYT 62

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+TG I + +   + +RR     ++DGTG +TL FF     M +N   +G
Sbjct: 63  INDLLPGISATVTGEILR-TDVTVSRRRTLICKISDGTGVLTLRFFNFSAAM-RNNLAKG 120

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++ V G+I++      ++HP Y   N          +  +Y    G+     + +I +A
Sbjct: 121 KQVVVYGEIRRGGQGAEIIHPEYKIQNHTGNVQLQETLTPIYPTTEGVRQATLRNLIDQA 180

Query: 179 LSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L  L    + E + ++L   +S  S+ +A + +H P       D E    PA  RL  +E
Sbjct: 181 LKLLDTCTINELLPEEL--SRSIISLPQALHTLHRPTPDIALVDLETGKHPAYRRLVLEE 238

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P+  E K+  + L  +PFSPT +Q+  + +I QD+++  
Sbjct: 239 LLAHHLSMLAVRAGVQRYHAQPLPTEDKLKPQFLNRLPFSPTHAQQRVVSEIEQDLAKDV 298

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   I V
Sbjct: 299 PMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRRWLEPLGIQV 358

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+K  E IA+GQ  +I+GTHA+FQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 359 GWLAGKQKGKARQKQQEAIANGQVAMIVGTHAMFQEQVKFSGLALVIIDEQHRFGVHQRL 418

Query: 413 KL----TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     ++   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 419 ALWEKGREQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRR 478

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +E+I+R++   L E ++AYW+C  IE+      ++       L        + ++HGRM 
Sbjct: 479 EEIIKRIRNACLDENRQAYWVCTLIEDSDVLEAQAAQATSEELTLALPELKVGLVHGRMK 538

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM++FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 539 AAEKQQVMEAFKCGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 598

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLS  +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 599 AIASHCVLLYKTPLSSTARIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 658

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A       +L   ++ A+HI    P+    R    R L     Y  A
Sbjct: 659 ADLLRDQGMLPEIQRIARHIHQHYPE--HARALIERWLPERVHYGNA 703


>gi|169794580|ref|YP_001712373.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AYE]
 gi|213158849|ref|YP_002320847.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB0057]
 gi|215482169|ref|YP_002324351.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii
           AB307-0294]
 gi|239503248|ref|ZP_04662558.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB900]
 gi|301347851|ref|ZP_07228592.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB056]
 gi|301511999|ref|ZP_07237236.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB058]
 gi|301597379|ref|ZP_07242387.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB059]
 gi|332853125|ref|ZP_08434562.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii 6013150]
 gi|332868629|ref|ZP_08438285.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii 6013113]
 gi|169147507|emb|CAM85368.1| ATP-dependent DNA helicase [Acinetobacter baumannii AYE]
 gi|213058009|gb|ACJ42911.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii AB0057]
 gi|213988100|gb|ACJ58399.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii
           AB307-0294]
 gi|332728794|gb|EGJ60153.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii 6013150]
 gi|332733306|gb|EGJ64500.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii 6013113]
          Length = 681

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 260/672 (38%), Positives = 389/672 (57%), Gaps = 21/672 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             +   +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R  
Sbjct: 2   TSVHQLQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSY 55

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G +     F   KR+    L+ D  G++TL F++     L +    G ++ + G+++
Sbjct: 56  LLEGEVKSV-DFPPGKRKSMAALIQDEFGKVTLRFYHIYKN-LTDKIKPGNRLRIFGEVR 113

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
                + + HP     N         + A+Y    GL+    ++ + +AL      LPE 
Sbjct: 114 VGARGLELYHPEIQLINEHTPLPKTQLTAIYPSTDGLTQAKLREYVKQALKHHSDALPEL 173

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244
           + K      +     EA + IH P    +     + + PA++RL ++EL+A QI+LL  R
Sbjct: 174 LPKQYTNGYAL---KEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLLTRR 230

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              ++           +A+K+L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+
Sbjct: 231 AYIRQIASPAFPSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGA 290

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R
Sbjct: 291 GKTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKAR 350

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---AP 421
             A ++I  G A +I+GTHALFQD++++ KL LVI+DEQHRFGV QRL L  K      P
Sbjct: 351 AHAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGAEQLTP 410

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     E
Sbjct: 411 HQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCRE 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           GK+AYW+C  +E+ +  + ++    +  + E F   +I ++HG+M   +K++VM +FKN 
Sbjct: 471 GKQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNN 530

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG + S C+LLY PPL
Sbjct: 531 ELQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKPPL 590

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A 
Sbjct: 591 SQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAH 650

Query: 661 KDAKHILTQDPD 672
             A+ +L   P+
Sbjct: 651 YVAQQVLKDYPE 662


>gi|145636800|ref|ZP_01792466.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           PittHH]
 gi|145270098|gb|EDK10035.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           PittHH]
          Length = 693

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 255/688 (37%), Positives = 390/688 (56%), Gaps = 26/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLLF+ P  + DR     
Sbjct: 1   MSLELLDSV--PLTSLSGVGAAISNKLAKI------GIHNLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +  E+  TI G I Q       +R    + L+DGT +I L FF     M +N F  G
Sbjct: 53  IANLRPEQYFTIEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++K+ ++   + HP Y  +  N+  V    +  +YS   GL  +  +K+  +A
Sbjct: 111 VRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQA 170

Query: 179 LSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E +  +    +   S+ EA  ++H P      E       PA++RL ++E
Sbjct: 171 LALLDKVKIAEILPNEFNPHQ--YSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +  
Sbjct: 229 LLAHNLAMQKVRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLLKDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R 
Sbjct: 409 MLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
            E++       ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM 
Sbjct: 469 AEIVMRVKNACVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +
Sbjct: 589 RTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
           A       ++   +  AK ++ + PDL 
Sbjct: 649 ANLMRDRKMIPTVQFYAKSLIQKYPDLA 676


>gi|326423778|ref|NP_759830.2| ATP-dependent DNA helicase RecG [Vibrio vulnificus CMCP6]
 gi|319999140|gb|AAO09357.2| ATP-dependent DNA helicase RecG [Vibrio vulnificus CMCP6]
          Length = 693

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 263/705 (37%), Positives = 406/705 (57%), Gaps = 31/705 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG K +  L KI        +   DLLF+ P  + DR     
Sbjct: 1   MSAQLLSAI--PLTSLSGVGAKVAEKLEKI------GLSSVQDLLFHLPLRYEDRTRIYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++       + G++ Q  +    KR+   + L+DG G ITL FF   T  +KN F EG
Sbjct: 53  IAKLHAGLWAAVQGHVMQVDTL-FGKRKMLTVKLSDGNGTITLRFFNF-TAAMKNNFAEG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + +   G+IK+    + +VHP Y F     +      +  VY    GL     + +  +A
Sbjct: 111 KLVHAYGEIKRGNMGLEIVHPDYKFFAPTQKPDVEQSLTPVYPTTDGLRQITLRNLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDE 232
           ++ L    + E +   L  ++   ++ +A +IIH P    + E       PA+ RL  +E
Sbjct: 171 IALLDKAAVQELLPAGLYDQQ--LTMGQALHIIHRPSPEINLELFDEGKHPAQVRLIMEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R + ++++ +P+    ++ Q++L  +PFSPT +Q   +++I +D+ + +
Sbjct: 229 LLAQNLSMLAVRSKGQQDVALPLPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDLQKAH 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIPV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    +   L RIA G+A +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKLKGKAKEAELARIASGEAKMVVGTHALFQEHVVFDHLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQ----KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           +L +    +   PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + 
Sbjct: 409 ELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKR 468

Query: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           ++++ER++   L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM 
Sbjct: 469 EDIVERIRHACLNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVRIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM +FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQAFKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLYH PLSK +  RLSVL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F I
Sbjct: 589 SVASHCVLLYHAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKI 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           A       L+   ++ A++I    P     +  +  I  +L + +
Sbjct: 649 ADLVRDQRLIPEVQRAARYIHHNYP-----QNAAAIIERWLGERD 688


>gi|325287658|ref|YP_004263448.1| ATP-dependent DNA helicase RecG [Cellulophaga lytica DSM 7489]
 gi|324323112|gb|ADY30577.1| ATP-dependent DNA helicase RecG [Cellulophaga lytica DSM 7489]
          Length = 701

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 249/695 (35%), Positives = 375/695 (53%), Gaps = 26/695 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M P   N L  P++  +GVG   +  L   +         + DLL   P+ ++D+    K
Sbjct: 1   MNP---NYLQTPIAYLKGVGPSRAQTLQSEL-----GVYTYQDLLNLFPNRYLDKTQYYK 52

Query: 61  ISEISEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           IS++      V + G I        ++ +       D TG++ L++F R  + +K     
Sbjct: 53  ISQLQRNSAEVQVIGKIIHLKEVGQKRGKRLVATFVDDTGKMELVWF-RGQKWIKENIKL 111

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLF-KKIIVE 177
                + GK         M HP             + ++ +Y     L+      K+  +
Sbjct: 112 NVPYVIYGKTNWFNGTFSMPHPEMELLEDHKNGLKVSMQPIYPSSEKLTNKGITNKVTSK 171

Query: 178 ALSRL-----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            L +L         E +   LL++      ++A   IH P+  +D    + A+ RL ++E
Sbjct: 172 LLQQLFIDTKAQFAETLPVYLLKELKLIGKSDALLNIHFPKSQQDL---AKAQFRLKFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIG-IPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQ 290
           L   Q+ L+  +   K +I   P N  G          +PF  T +Q+  +K+I  D+  
Sbjct: 229 LFYIQLQLIAKKMVRKNKIKGFPFNAVGTYFSDFYNNYLPFELTNAQKRVVKEIRADLGS 288

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
             +M R+LQGDVGSGKT+VAL+ M  A++ G QA +MAP  ILA QHY  I +  Q  +I
Sbjct: 289 NAQMNRLLQGDVGSGKTIVALMTMLLALDNGFQACLMAPTEILATQHYNGITELLQGLKI 348

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V ++TG++ ++ RR   E +  G+ HI+IGTHAL +D +QY  L L I+DEQHRFGV Q
Sbjct: 349 KVSLLTGSVKKSARRIIHEELESGELHILIGTHALLEDKVQYKNLGLAIIDEQHRFGVAQ 408

Query: 411 RLKLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           R KL +K T P H+L+MTATPIPRTL ++  GD+DIS I E P GRKPIKTV        
Sbjct: 409 RAKLWRKNTMPPHILVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPIKTVHRFDANRL 468

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMS 526
           +V   LK  ++ G++ Y + P I+E +  +++ +++ + S+   F +    I+I+HG+M 
Sbjct: 469 KVFRFLKDEINIGRQVYVVYPLIKESEALDYKDLMDGYESIARDFPAPKYQISIVHGQMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DKE  M  F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG
Sbjct: 529 PDDKEFEMQRFIKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            + S CIL+    LS+++ TRL  +  T DGF IAE DLK R  G+I+G +QSG+    I
Sbjct: 589 ADQSYCILMTGHKLSEDAKTRLETMVRTNDGFEIAEVDLKLRGPGDIMGTQQSGVLNLKI 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           A     + +L+ AR  A  IL +DP L+      +
Sbjct: 649 ADIVKDNDILQTARHYAIKILKEDPSLSHPNNNVV 683


>gi|240948170|ref|ZP_04752573.1| ATP-dependent DNA helicase RecG [Actinobacillus minor NM305]
 gi|240297523|gb|EER48030.1| ATP-dependent DNA helicase RecG [Actinobacillus minor NM305]
          Length = 693

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 263/696 (37%), Positives = 388/696 (55%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  L +I            DLLF+ P  + DR     I++I  E   T
Sbjct: 10  PLTALSGVGAAIAEKLGRI------GIHNVQDLLFHLPMRYEDRTRITPIADIRPESFAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I GY+ Q +  Q  +R    + L+D T +I L FF     M KN F  G ++   G+IK+
Sbjct: 64  IEGYV-QLTEVQFGRRPILSVTLSDSTSKIMLKFFNFNAGM-KNSFATGVRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
            +    + HP Y  I +N        +  +YS   GL     +K+  +AL+ L    + E
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQASLRKLTEQALAVLNNVQVAE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
            +  +    +   S+ EA  ++H P  +   E       PA++RL ++ELLA  +A+  +
Sbjct: 182 LLPNEYNPHQ--YSLKEALQLLHRPPPSITPEMLEKGEHPAQKRLIFEELLAHNLAMQQL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   K++   P+  +  +  + L  +PF PT++Q     DI +D++Q + M+R++QGDVG
Sbjct: 240 RLGVKQQFAEPLRYQTDLKSRFLAGLPFQPTQAQSRVTADIERDLAQNSPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V  + G +    
Sbjct: 300 SGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   LE I +G   +IIGTHALFQ++++++ L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RAAQLEAIKNGDVQMIIGTHALFQENVEFHHLALVIIDEQHRFGVHQRLTLREKGAKGDV 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV+I   R  E+++R+    
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEERRAEIVQRVYQAC 479

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+++M  F
Sbjct: 480 KNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQAIMAEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 540 KAANLDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGSTASHCVLMYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL V+++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++ 
Sbjct: 600 PPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVADLMRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           + ++ AK I+ ++P L        R L    +Y  A
Sbjct: 660 LVQRYAKQIIVENPPLA--EALIKRWLNDKTEYTNA 693


>gi|309972869|gb|ADO96070.1| ATP-dependent DNA helicase [Haemophilus influenzae R2846]
          Length = 693

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 254/688 (36%), Positives = 390/688 (56%), Gaps = 26/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLLF+ P  + DR     
Sbjct: 1   MSLELLDAV--PLTSLSGVGAAISNKLAKI------GIHNLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +  E+  TI G I Q       +R    + L+DGT +I L FF     M +N F  G
Sbjct: 53  IANLRPEQYFTIEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNVGM-RNSFQVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++K+ ++   + HP Y  +  N+  V    +  +YS   GL  +  +K+  +A
Sbjct: 111 VRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E +  +    +   S+ EA  ++H P      E       PA++RL ++E
Sbjct: 171 LALLDKVQIAEILPNEFNPHQ--YSLKEALGLLHRPPPDISLEMLEQGKHPAQQRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +  
Sbjct: 229 LLAHNLAMQKVRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R 
Sbjct: 409 MLRKKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
            E++       ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM 
Sbjct: 469 TEIVMRVKNACVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +
Sbjct: 589 STASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
           A       ++   +  AK ++ + PD+ 
Sbjct: 649 ANLMRDRKMIPTVQHYAKSLIQKYPDVA 676


>gi|260557013|ref|ZP_05829230.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii ATCC
           19606]
 gi|260409619|gb|EEX02920.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii ATCC
           19606]
          Length = 681

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 261/672 (38%), Positives = 390/672 (58%), Gaps = 21/672 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             +   +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R  
Sbjct: 2   TSVHQLQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSY 55

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G +     F L KR+    L+ D  G++TL F++     L +    G ++ + G+++
Sbjct: 56  LLEGEVKSV-DFPLGKRKSMAALIQDEFGKVTLRFYHIYKN-LTDKIKPGNRLRIFGEVR 113

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
                + + HP     N         + A+Y    GL+    ++ + +AL      LPE 
Sbjct: 114 VGARGLELYHPEIQLINEHTPLPKTQLTAIYPSTDGLTQAKLREYVKQALKHHSDALPEL 173

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244
           + K      +     EA + IH P    +     + + PA++RL ++EL+A QI+LL  R
Sbjct: 174 LPKQYTNGYAL---KEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLLTRR 230

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              ++           +A+K+L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+
Sbjct: 231 AYIRQIASPAFPSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGA 290

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R
Sbjct: 291 GKTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKAR 350

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---AP 421
             A ++I  G A +I+GTHALFQD++++ KL LVI+DEQHRFGV QRL L  K      P
Sbjct: 351 AHAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGAEQLTP 410

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     E
Sbjct: 411 HQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCRE 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           GK+AYW+C  +E+ +  + ++    +  + E F   +I ++HG+M   +K++VM +FKN 
Sbjct: 471 GKQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNN 530

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG + S C+LLY PPL
Sbjct: 531 ELQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKPPL 590

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A 
Sbjct: 591 SQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAH 650

Query: 661 KDAKHILTQDPD 672
             A+ +L   P+
Sbjct: 651 YVAQQVLKDYPE 662


>gi|219871623|ref|YP_002475998.1| ATP-dependent DNA helicase RecG [Haemophilus parasuis SH0165]
 gi|219691827|gb|ACL33050.1| ATP-dependent DNA helicase [Haemophilus parasuis SH0165]
          Length = 693

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 261/686 (38%), Positives = 380/686 (55%), Gaps = 26/686 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL+   GVG   S  LS+I            DLLF+ P  + DR     
Sbjct: 1   MNQQLLDGV--PLTALSGVGAAISEKLSRI------GINNVQDLLFHLPLRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++  E   T+ G++ Q +  Q  +R      ++DGT +ITL FF     M KN    G
Sbjct: 53  IADVRPESFATVEGFV-QLTEVQFGRRPILSTTISDGTSKITLKFFNFNAGM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G+IK+ +    + HP Y  I  N        +  +Y    GL     +K+  +A
Sbjct: 111 VRVKTFGEIKRGRFMAEIHHPEYQIIRGNQPLELAETLTPIYPTTEGLKQASLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDE 232
           L+ L    + E +  +    K   S+ EA  ++H P  +   E       PA++RL ++E
Sbjct: 171 LALLERVQVAELLPDEFNPHK--YSLKEALQLLHRPPPSVSSELLDKGEHPAQKRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++    P+  +  + Q+ L  +PF PT +Q     +I QD+++  
Sbjct: 229 LLAHNLAMQQVRMGVQQHFAEPLCYQTDLKQRFLATLPFQPTNAQSRVTAEIEQDLAKPF 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHAHNFANWLRPFGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R   LE I +G   +IIGTHALFQD ++++ L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDQVEFHHLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R 
Sbjct: 409 TLREKGAKGDVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           DEV+ R+     +E ++AYW+C  I+E +    ++       L        I ++HGRM 
Sbjct: 469 DEVVRRVYQACKNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQHALPDLRIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+++M  FK     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG
Sbjct: 529 PQEKQAIMAEFKAADIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y  PL K S  RL VL++++DGF+IAE+DL+ R  GE+LG KQ+GM +F I
Sbjct: 589 ATASHCVLMYKAPLGKISSKRLQVLRDSQDGFVIAEKDLEIRGPGEVLGTKQTGMAEFKI 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A       ++ + +  AK +  + PD
Sbjct: 649 ANLMRDRKMIPLVQSYAKQLTLKYPD 674


>gi|260549854|ref|ZP_05824070.1| ATP-dependent DNA helicase RecG [Acinetobacter sp. RUH2624]
 gi|260407104|gb|EEX00581.1| ATP-dependent DNA helicase RecG [Acinetobacter sp. RUH2624]
          Length = 681

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 261/672 (38%), Positives = 389/672 (57%), Gaps = 21/672 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             +   +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R  
Sbjct: 2   TSVHQLQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSY 55

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G +     F   KR+    L+ D  G++TL F++     L +    G ++ + G+++
Sbjct: 56  LLEGEVKSV-DFPPGKRKSMAALIQDEFGKVTLRFYHIYKN-LTDKIKPGHRLRIFGEVR 113

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
                + + HP     N         + A+Y    GL+    ++ + +AL      LPE 
Sbjct: 114 VGARGLELYHPEIQLINEHTPLPKTQLTAIYPSTDGLTQPKLREYVKQALKHHSDALPEL 173

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244
           + K      +     EA + IH P    +     + + PA++RL ++EL+A QI+LL  R
Sbjct: 174 LPKQYTNGYAL---KEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLLTRR 230

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              ++           +A+K+L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+
Sbjct: 231 AYIRQIASPAFPSSKVLAKKLLEALPFQMTNAQKRVSKEILSDLKQHQPMLRLVQGDVGA 290

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R
Sbjct: 291 GKTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKAR 350

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---AP 421
            +A ++I  G A +I+GTHALFQD++++ KL LVI+DEQHRFGV QRL L  K      P
Sbjct: 351 TQAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGAEQLTP 410

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV+ R+     E
Sbjct: 411 HQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLNRIATNCRE 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           GK+AYW+C  +E+ +  + ++    +  + E F   +I ++HG+M   +K+SVM +FKN 
Sbjct: 471 GKQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQSVMQAFKNN 530

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG + S C+LLY PPL
Sbjct: 531 ELQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKPPL 590

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A 
Sbjct: 591 SQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAH 650

Query: 661 KDAKHILTQDPD 672
             A+ +L   P+
Sbjct: 651 YVAQQVLKDYPE 662


>gi|68250339|ref|YP_249451.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae 86-028NP]
 gi|68058538|gb|AAX88791.1| ATP-dependent DNA helicase [Haemophilus influenzae 86-028NP]
          Length = 693

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 255/688 (37%), Positives = 390/688 (56%), Gaps = 26/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLLF+ P  + DR     
Sbjct: 1   MSLELLDAV--PLTSLSGVGAAISNKLAKI------GIQNLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +  E+  TI G I Q       +R    + L+DGT +I L FF     M +N F  G
Sbjct: 53  IANLRPEQYFTIEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQAG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++K+ ++   + HP Y  +  N+  V    +  +YS   GL  +  +K+  +A
Sbjct: 111 VRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E +  +    +   S+ EA  ++H P      E       PA++RL ++E
Sbjct: 171 LTLLDKVQIAEILPNEFNPHQ--YSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +  
Sbjct: 229 LLAHNLAMQKVRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R 
Sbjct: 409 MLREKGEKAGFHPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
            E++       ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM 
Sbjct: 469 AEIVMRVKNACVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  I
Sbjct: 589 STASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRI 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
           A       ++   +  AK ++ + PD+ 
Sbjct: 649 ANLMRDRKMIPTVQHYAKSLIQKYPDVA 676


>gi|260774741|ref|ZP_05883644.1| ATP-dependent DNA helicase RecG [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609303|gb|EEX35455.1| ATP-dependent DNA helicase RecG [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 692

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 262/675 (38%), Positives = 393/675 (58%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL++  GVG K +  L+K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLTSLTGVGAKVAEKLAKV------GLNSVQDLLFHLPLRYEDRTRIYPIVKLHAGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G ITL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMSADTL-FGKRKMLTVKISDGNGTITLRFFNF-TAAMKNNFAEGKTVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + +VHP Y F   N        +  VY    GL     + +  +AL+ +    + E
Sbjct: 121 GSFGLEIVHPDYKFYAPNQPAEVEQNLTPVYPTTDGLRQITLRNLTDQALALIDKAAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++   S+A+A + IH P    D     E   PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYNQQ--VSLAQALHTIHRPTPDIDLQAFDEGKHPAQIRLIMEELLAQNLSMLSV 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + ++++ +P+    ++ Q++L  +PFSPTK+Q   + +I QD+ + + M+R++QGDVG
Sbjct: 239 RSKGQQDVALPLAERNQLKQQLLDQLPFSPTKAQSRVVAEIEQDLEKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +    
Sbjct: 299 SGKTLVAALAALRALEHGYQVALMAPTELLAEQHALNFAQWLEPMGINVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           +   L +IA G+A +++GTHALFQ+ + ++ L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 KEIELAKIASGEAQMVVGTHALFQEHVIFHHLALVIIDEQHRFGVHQRLELREKGEKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++   
Sbjct: 419 FPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  +    L        I ++HGRM   +K+SVM  F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQSVMQDF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH
Sbjct: 539 KDNKLHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+GM  F IA       L+ 
Sbjct: 599 SPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGMADFKIADLIRDQHLIP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI    PD
Sbjct: 659 EVQRVARHIHDNFPD 673


>gi|163788712|ref|ZP_02183157.1| ATP-dependent DNA helicase [Flavobacteriales bacterium ALC-1]
 gi|159875949|gb|EDP70008.1| ATP-dependent DNA helicase [Flavobacteriales bacterium ALC-1]
          Length = 700

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 250/701 (35%), Positives = 383/701 (54%), Gaps = 26/701 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS-EE 67
           L  P+   +GVG   +  L   ++        + DL+   P+ +IDR    KI+E+    
Sbjct: 5   LQTPIDYLKGVGPNRADLLRSELD-----IHTYQDLINLFPNRYIDRTKYYKINELQRNN 59

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V + G I+       ++ +       D TG + L++F R  + ++     G+   + G
Sbjct: 60  AEVQVIGVITGFREVAQKRGKRLVADFKDDTGSMELVWF-RGQKWIRESLKTGKPYVIFG 118

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPT-----GLSVDLFKKIIVEA-LS 180
           K     ++  M HP        D N    ++A+Y         G++  +  KI+ +  L 
Sbjct: 119 KTNWFSSKYSMPHPEIELQTEHDNNLRSAMQAIYPSTEKLSNKGITNRVITKIMQQLFLD 178

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
                 E +   ++++    S ++A   IH P+     E  S A+ RL ++EL   Q+ L
Sbjct: 179 TKGKFVETLSDLVMRELKLISKSDALFNIHFPKTP---ELLSKAQFRLKFEELFYIQLQL 235

Query: 241 LLMRKQFKKEIG-IPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +L     K +I   P    G         ++PF  T +Q+  +K+I QD+    +M R+L
Sbjct: 236 ILKNLIHKSKIKGFPFEKVGDYFNTFYNSHLPFELTNAQKRVLKEIRQDLGSNAQMNRLL 295

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA ++M   ++ G Q  +MAP  IL+ QHY  +K+      I + ++TG+
Sbjct: 296 QGDVGSGKTIVAFMSMLVGLDNGFQCCLMAPTEILSVQHYNGLKELCNKLNIRISLLTGS 355

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              + RRK  E + +G   I+IGTHAL +D +++  L L I+DEQHRFGVQQR KL  K 
Sbjct: 356 SKTSERRKIHENLENGNLQILIGTHALLEDKVKFKNLGLAIIDEQHRFGVQQRSKLWHKN 415

Query: 419 T-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
           T  PHVL+MTATPIPRTL ++  GD+DIS I E PAGRKPIKTV    N   +V + +K 
Sbjct: 416 TSPPHVLVMTATPIPRTLAMSVYGDLDISVIDELPAGRKPIKTVHRFDNNRLKVFKFIKD 475

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVM 534
            +++G++ Y + P I+E ++ +++ +++ + S+   F      I+I+HG+M   DK+  M
Sbjct: 476 EIAKGRQIYVVYPLIQESEKMDYKDLMDGYESISREFPMPKYQISIVHGKMKPDDKDYEM 535

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G   +++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E S CIL
Sbjct: 536 QRFVRGETNIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGAEQSFCIL 595

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +    LS+NS TRL  +  + DGF IAE DLK R  G+I+G +QSG+    IA       
Sbjct: 596 MTSHKLSQNSKTRLETMVRSSDGFEIAEVDLKLRGPGDIMGTQQSGVLNLRIADIVKDKD 655

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           +LE AR  AK +L  DP L        +++L  Y+    ++
Sbjct: 656 ILEQARYYAKSVLKLDPSLGLPEH---KVILNTYREMSKYR 693


>gi|307244280|ref|ZP_07526395.1| ATP-dependent DNA helicase RecG [Peptostreptococcus stomatis DSM
           17678]
 gi|306492430|gb|EFM64468.1| ATP-dependent DNA helicase RecG [Peptostreptococcus stomatis DSM
           17678]
          Length = 685

 Score =  585 bits (1508), Expect = e-164,   Method: Composition-based stats.
 Identities = 247/679 (36%), Positives = 380/679 (55%), Gaps = 17/679 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +G+G K +  ++++            D L+Y P  F DR  + KI ++ E  
Sbjct: 5   LNENIQFVKGIGPKKAEKMARL------GIFTVKDALYYFPRQFEDRSRQKKIFQLEEGE 58

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              +   I + +S   +  R  +  ++D TG+  L+FF +    L+N F  G  +   G 
Sbjct: 59  KTGVRVKIDRINSVNRRGLRITEFYVSDDTGKAKLVFFNK--AYLRNTFRVGDIVKAFGS 116

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPE 187
           +KK    I  +H   I ++  D N  +I  VYSL  G+       +I        + + E
Sbjct: 117 VKKNLGPITELHNCEIEYDKIDKNTGIIVPVYSLTAGVGNKEVMGMIRNIFESSDISIDE 176

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
           ++ K ++ K +   +  A   +H P K ++      A  RL ++ELL  Q+ L  ++   
Sbjct: 177 YLPKWIVDKYNLCGVDFAIRNMHFPEKKENV---KIAMYRLIFEELLFLQLGLFAVKGNN 233

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K   GI      +   KI  N+PF  T++Q+ A  DI+ DM+    M R++QGDVGSGKT
Sbjct: 234 KVSKGIKFKRH-EDMDKIEENLPFRLTRAQKKAYDDIMADMTSDRIMNRLVQGDVGSGKT 292

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A+A  V  G Q   MAP  ILA+QH E  K++  NT I VE++TG+  +    + 
Sbjct: 293 VVAQLALANCVLNGYQGAYMAPTEILAKQHMESFKEFFDNTGIRVEVLTGSSTRKEASEI 352

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L+ +A GQ  I+IGTHAL +D + +  L LVI DEQHRFGV QR +LT K+  P VL+MT
Sbjct: 353 LKDLASGQIDILIGTHALIEDRVDFANLGLVITDEQHRFGVNQRGRLTSKSENPDVLVMT 412

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAY 486
           ATPIPRTL L   GD+DIS I E P GRKPI+T+ I   + +          + +G++ Y
Sbjct: 413 ATPIPRTLALILYGDLDISIIDELPPGRKPIETLAIEKRKRESYYMSKVRSEIEKGRQVY 472

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP +EE +  + +S  E ++ L   F     + ++HG+M   +K+ VM++FKN    +
Sbjct: 473 VVCPLVEESETLDLKSASEVYDELRGDFFKDLRVGLLHGKMKASEKDQVMEAFKNHELDI 532

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG++V +AS++IIENAE FGLAQLHQLRGRVGRG E S C L+Y    ++  
Sbjct: 533 LVSTTVIEVGVNVPNASLMIIENAERFGLAQLHQLRGRVGRGSEKSYCTLIYGSK-TEIC 591

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+++++ T DGF I+E+DL+ R  G+  G +Q G+P+  +A    H  +L + +K+A+
Sbjct: 592 RHRMAIMEETNDGFKISEKDLELRGPGDFFGTRQHGLPELRVANLFKHMKILRLVQKEAR 651

Query: 665 HILTQDPDLTSVRGQSIRI 683
            I  +DP L     + +R+
Sbjct: 652 EIYAEDPSLRLKENEGLRL 670


>gi|261211273|ref|ZP_05925562.1| ATP-dependent DNA helicase RecG [Vibrio sp. RC341]
 gi|260839774|gb|EEX66385.1| ATP-dependent DNA helicase RecG [Vibrio sp. RC341]
          Length = 692

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 261/675 (38%), Positives = 391/675 (57%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFFNF-TAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + ++HP Y F          P +  VY    GL     + +  +AL+ L    + E
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDQQ--MTLAQALKIIHRPSADIDLSQFEQGRHPAQVRLIMEELLAQNLSMLAI 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+++ + M+R++QGDVG
Sbjct: 239 RSQGQQDVALPLPPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLAKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 RETELARIASGEVKMVVGTHALFQEHVSFDHLALVIIDEQHRFGVHQRLELREKGAKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++   
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  E    L       +I ++HGRM   +K++VM +F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAAETAEDLQRKLPEVNIGLVHGRMKAAEKQAVMQAF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+H
Sbjct: 539 KNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 APLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLVP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI  + P 
Sbjct: 659 QVQRIARHIHERYPQ 673


>gi|254479490|ref|ZP_05092814.1| ATP-dependent DNA helicase RecG [Carboxydibrachium pacificum DSM
           12653]
 gi|214034575|gb|EEB75325.1| ATP-dependent DNA helicase RecG [Carboxydibrachium pacificum DSM
           12653]
          Length = 682

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 256/694 (36%), Positives = 396/694 (57%), Gaps = 21/694 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG K +    K+            DL+FY P  + DR    KI ++    
Sbjct: 3   LDLDIQYVKGVGPKRAKLFKKL------GIDMVKDLIFYFPRDYEDRSEIVKIEDLVVGE 56

Query: 69  IVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             T   YI+      +  +    KI + DGTG + L+++ +    +KN F  G +  ++G
Sbjct: 57  KQTFKAYIAGSAREVKTSRVVITKIPVKDGTGAVELVWYNQ--PYMKNNFKIGEEYIISG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVL 185
           K++    ++++ +P         ++N   I  VY L  GL+ ++ +K+I  AL   L  +
Sbjct: 115 KLQFKYGQLVVENPVLEKSEEDLNLNTGRIVPVYGLTEGLTQNILRKVIFNALSEYLDEV 174

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E+ E++ L++K   ++ EA   IH P   KD E  + A+ RL Y EL   Q+AL L++K
Sbjct: 175 EEFFEEEFLREKGLMNLKEALLNIHFP---KDEEKLARAKYRLKYQELFLLQLALFLVKK 231

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             K++ GI         +  + N+PF  T +Q   +K+I+ DM+    M R++QGDVGSG
Sbjct: 232 SVKEKRGIRFRKVD--IKPFVSNLPFKLTSAQMKVLKEIILDMASDKVMNRLIQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  AM  A + G Q  +MAP  ILA+QHY+ +++  + T I + +++G++  + R+
Sbjct: 290 KTIVAAFAMYIAAKNGYQVAMMAPTEILAKQHYKTLEEIFKGTDIRIGLLSGSLSPSGRK 349

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE+I  G+  +++GTHAL ++ + +  L L I DEQHRFGV+QR  L QK   P VL+
Sbjct: 350 EVLEKIEKGEYDVVVGTHALIEEDVSFKNLGLCITDEQHRFGVRQRALLAQKGENPDVLV 409

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L   GD+DIS I + P GRK +KT +IP +   +  E     + +G++ 
Sbjct: 410 MTATPIPRTLALILYGDLDISIIDQLPPGRKRVKTYVIPSSMRKKAYEFAIKEVKKGRQV 469

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE  +    S    +  +++     + + ++HG+MSD DKE +M++F  G   
Sbjct: 470 YVVCPLIEESDKIKAASAEIVYREIYKDAFKEARVGLLHGKMSDSDKERIMEAFVRGEID 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++I+ENAE FGLAQLHQLRGRVGR E  S CIL+ + P S+ 
Sbjct: 530 ILVSTTVIEVGVNVPNATVMIVENAERFGLAQLHQLRGRVGRSEFQSYCILINYSP-SET 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL VL    DGF IAE DL+ R  GE LG KQ G+P+F IA       +L+  +KD 
Sbjct: 589 AKKRLEVLARISDGFKIAERDLEIRGPGEFLGEKQHGLPEFKIANLFEDIDILKRVQKDV 648

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
           + +L +DP L   R   +R +L    Y++    I
Sbjct: 649 ESLLEEDPKLE--RHPKLRQVLISEFYDKVKDII 680


>gi|315127929|ref|YP_004069932.1| ATP-dependent DNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315016442|gb|ADT69780.1| ATP-dependent DNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 673

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 261/665 (39%), Positives = 379/665 (56%), Gaps = 26/665 (3%)

Query: 23  YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF 82
            +  L K+        T   D+LF+ P  + DR     ISE++    VT+   I + S  
Sbjct: 1   MAERLLKL------GITTVQDMLFHLPLRYEDRTRIYAISELTAHSHVTVQATI-ETSQI 53

Query: 83  QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142
              KRR     +NDGTG +TL FF   T   KN F  G+ I   G+I++ +    M HP 
Sbjct: 54  TFGKRRMLVCQINDGTGRLTLRFFNF-TAAQKNAFSAGKIIRCFGEIRRGRVGFEMSHPE 112

Query: 143 YIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200
           Y   +   Q      +  VYS   GL     + +  +A+    +L ++  ++LL ++  P
Sbjct: 113 YSISDTFEQQPTSSTLTPVYSTTEGLKQLSIRALSEQAIE---LLQKYAVEELLPQQWQP 169

Query: 201 S---IAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
           S   +++A  ++H P    D     + T PA++RL ++ELLA  ++LL +R+Q ++   I
Sbjct: 170 SQLPLSDALLLLHRPPNDVDIIALEQGTHPAQQRLVFEELLAQNLSLLKVREQGQQVKAI 229

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            +     +  + L  +PF+PT +Q   + +I  DM     M+R++QGDVGSGKTLVA ++
Sbjct: 230 ALEPTNPLEAQFLAQLPFAPTNAQSRVVSEIKTDMQHAYPMMRLVQGDVGSGKTLVAALS 289

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
              A+  G Q  +MAP  IL++QH      + +N  I V  + G      R   L  IA 
Sbjct: 290 ALTAIAQGYQVALMAPTEILSEQHGINFSSWFENLGISVAWLGGKTKGKERVNTLAMIAS 349

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLMTAT 429
           G+A +I+GTHALFQD +++  L+L+I+DEQHRFGV QRL L +K       PH L+MTAT
Sbjct: 350 GEAQMIVGTHALFQDEVKFNNLVLIIIDEQHRFGVHQRLSLREKGRFGDCYPHQLVMTAT 409

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE-GKKAYWI 488
           PIPRTL +T+  D++ S I E P GR PI TV IP  R D++I R+K+  +E G++ YW+
Sbjct: 410 PIPRTLAMTAYADLETSVIDELPPGRTPITTVAIPDTRRDDIISRVKLACNEQGRQVYWV 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           C  I+E +    ++  +    L E     +I ++HGRM   +K+++M  FK G   +L+A
Sbjct: 470 CTLIDESEVLQCQAAEDSALQLKEALPELNIGLVHGRMKATEKQAIMSEFKTGNIHVLVA 529

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG+DV +AS+IIIEN E  GLAQLHQLRGRVGRG   S C+LLYH PLS  +  R
Sbjct: 530 TTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGATASHCVLLYHAPLSHTAQKR 589

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L VL+++ DGF+IAE DL+ R  GE+LG KQ+G+ +F IA        L   R  A+ +L
Sbjct: 590 LGVLRDSNDGFVIAERDLEIRGPGEVLGTKQTGLAEFKIADLTRDKQTLNQVRPIAQQML 649

Query: 668 TQDPD 672
            Q P 
Sbjct: 650 KQYPQ 654


>gi|184159612|ref|YP_001847951.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii ACICU]
 gi|229577088|ref|YP_001086094.2| ATP-dependent DNA helicase RecG [Acinetobacter baumannii ATCC
           17978]
 gi|332876097|ref|ZP_08443881.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii 6014059]
 gi|183211206|gb|ACC58604.1| RecG-like helicase [Acinetobacter baumannii ACICU]
 gi|193078488|gb|ABO13492.2| ATP-dependent DNA helicase [Acinetobacter baumannii ATCC 17978]
 gi|322509522|gb|ADX04976.1| RecG [Acinetobacter baumannii 1656-2]
 gi|323519542|gb|ADX93923.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332735715|gb|EGJ66758.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii 6014059]
          Length = 681

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 260/672 (38%), Positives = 388/672 (57%), Gaps = 21/672 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             +   +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R  
Sbjct: 2   TSVHQLQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSY 55

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G +     F   KR+    L+ D  G++TL F++     L +    G ++ + G+++
Sbjct: 56  LLEGEVKSV-DFPPGKRKSMAALIQDEFGKVTLRFYHIYKN-LTDKIKPGNRLRIFGEVR 113

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
                + + HP     N         + A+Y    GL+    ++ + +AL      LPE 
Sbjct: 114 VGARGLELYHPEIQLINEHTPLPKTQLTAIYPSTDGLTQAKLREYVKQALKHHSDALPEL 173

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244
           + K      +     EA + IH P    +     + + PA++RL ++EL+A QI+LL  R
Sbjct: 174 LPKQYTNGYAL---KEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLLTRR 230

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              ++           +A+K+L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+
Sbjct: 231 AYIRQIASPAFPSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGA 290

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R
Sbjct: 291 GKTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKAR 350

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---AP 421
             A ++I  G A +I+GTHALFQD++++ KL LVI+DEQHRFGV QRL L  K      P
Sbjct: 351 AHAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGAEQLTP 410

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV+ R+     E
Sbjct: 411 HQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLHRIASNCRE 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           GK+AYW+C  +E+ +  + ++    +  + E F   +I ++HG+M   +K++VM +FKN 
Sbjct: 471 GKQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNN 530

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG + S C+LLY PPL
Sbjct: 531 ELQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKPPL 590

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A 
Sbjct: 591 SQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAH 650

Query: 661 KDAKHILTQDPD 672
             A+ +L   P+
Sbjct: 651 YVAQQVLKDYPE 662


>gi|254360948|ref|ZP_04977094.1| helicase RecG [Mannheimia haemolytica PHL213]
 gi|153092427|gb|EDN73490.1| helicase RecG [Mannheimia haemolytica PHL213]
          Length = 693

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 266/698 (38%), Positives = 389/698 (55%), Gaps = 30/698 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   S  LS+I            DLLF+ P  + DR     I+++  E   T
Sbjct: 10  PLTALSGVGAAISEKLSRI------GINNVQDLLFHLPMRYEDRTRITPIADVRPESFAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I GY+ Q +  Q  KR    + L+D T +I L FF     M KN    G ++   G+IK+
Sbjct: 64  IEGYV-QLTEVQFGKRPILSVTLSDSTSKIMLKFFNFNAGM-KNSLATGVRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            +    + HP Y  I  N   V    +  +YS   GL     +K+  +AL+ L  +   E
Sbjct: 122 GRFMAEIHHPEYQIIRDNQPLVLAETLTPIYSTTEGLKQASLRKLTEQALALLEKVKVAE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            +  +    K   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  +
Sbjct: 182 LLPDEYNPHK--YSLKEALQLLHRPPPTISAEVLEKGDHPAQKRLIFEELLAHNLAMQQL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   K++    +  +  I Q+ L ++PF PT +Q     DI QD+++ + M+R++QGDVG
Sbjct: 240 RLGVKQQYAEALTYQTDIKQRFLDSLPFKPTHAQSRVTADIEQDLAKPHPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH      +     I V  + G +    
Sbjct: 300 SGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLNPFGIEVGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   LE I +G   +IIGTHALFQD+++++ L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RTAQLEAIKNGDVQMIIGTHALFQDNVEFHHLALVIIDEQHRFGVHQRLTLREKGAKENN 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV+I  +R  E+++R+  V 
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEDRRAEIVQRVYQVC 479

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             E ++AYW+C  I+E +    ++       L        I ++HGR+   +K+++M  F
Sbjct: 480 KQEHRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRLKPQEKQAIMAEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 540 KAANLDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLMYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL V+++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++ 
Sbjct: 600 PPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVADLMRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSI--RILLYLYQYNEA 693
           + ++ AK I++++        +++  R L    +Y  A
Sbjct: 660 LVQRYAKQIISEN----QPLAEALIKRWLDNKAEYTNA 693


>gi|149189235|ref|ZP_01867522.1| ATP-dependent DNA helicase RecG [Vibrio shilonii AK1]
 gi|148836989|gb|EDL53939.1| ATP-dependent DNA helicase RecG [Vibrio shilonii AK1]
          Length = 692

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 259/669 (38%), Positives = 385/669 (57%), Gaps = 24/669 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           GVG K +  L+K+            DLLF+ P  + DR     I  +      ++ G + 
Sbjct: 15  GVGAKVAEKLAKV------GLHSVQDLLFHLPHRYEDRTRIYPIVRLHPGLWGSVQGKVM 68

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
             S     +R+   + ++DG G ITL FF   T  +KN F EGR I   G++K+  + + 
Sbjct: 69  S-SDVAFGRRKMLTVKVSDGNGTITLRFFNF-TAAMKNNFSEGRLIVAYGEVKRGNHGLE 126

Query: 138 MVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPEWIEKDL 193
           ++HP Y F            +  VY    GL     + +  +AL  +    + E +   L
Sbjct: 127 IIHPEYKFQTEGKAPKLEQTLTPVYPTTEGLRQLTLRNLTDQALELMDKAAVDELLPSGL 186

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             ++   ++AEA + IH P    +     E   PA++RL  +EL+A  +++L +R + ++
Sbjct: 187 YNQQ--ITLAEALHTIHRPPPTINLDDFDEGKHPAQQRLIIEELMAQNLSMLAVRSKGQQ 244

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           +  I +    K+  ++L  +PFSPT +Q   +++I  D+++   M+R++QGDVGSGKTLV
Sbjct: 245 DTAIGLAPVEKLKDQLLEQLPFSPTGAQSRVVQEIETDLAKPIPMMRLVQGDVGSGKTLV 304

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A +A   A+E G Q  +MAP  +LA+QH      + +   I V  ++G      +   L 
Sbjct: 305 AALAAVRAIEHGYQVAMMAPTELLAEQHAINFAGWFEAMGIQVGWLSGKQKGKTKEAELA 364

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLL 425
           RIA G+A +++GTHALFQ+S+ ++ L LVI+DEQHRFGV QRL+L +K       PH L+
Sbjct: 365 RIASGEAQMVVGTHALFQESVDFHNLALVIIDEQHRFGVHQRLELREKGAKQGFYPHQLI 424

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEGKK 484
           MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D++IER+K   L EGK+
Sbjct: 425 MTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIIERVKNACLHEGKQ 484

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           AYW+C  I+E +    ++  E    L        I ++HGRM   +K+ VM  FKN    
Sbjct: 485 AYWVCTLIDESEVLEAQAAAETAEDLQRKLPDLKIGLVHGRMKPAEKQQVMKQFKNNELH 544

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH PLSK 
Sbjct: 545 LLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHSPLSKT 604

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL VL+ + DGF+IA++DL+ R  GE+LG KQ+G+  F IA       L+   ++ A
Sbjct: 605 AQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQTGLADFKIADLVRDQRLVPEVQRIA 664

Query: 664 KHILTQDPD 672
           +H+  Q P+
Sbjct: 665 RHVHEQYPE 673


>gi|161579578|ref|NP_927622.2| ATP-dependent DNA helicase RecG [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 693

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 396/707 (56%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR   L+ +  PL++ RGVG   +  L+KI            DLL + P  + D+     
Sbjct: 1   MRGPLLDAI--PLTSLRGVGANQAAKLAKI------GLVNLQDLLLHFPLRYEDQTRLYT 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+TG I + +   + +RR     ++DGTG +TL FF     M +N   +G
Sbjct: 53  INDLLPGISATVTGEILR-TDVTVSRRRTLICKISDGTGVLTLRFFNFSAAM-RNNLAKG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++ V G+I++      ++HP Y   N          +  +Y    G+     + +I +A
Sbjct: 111 KQVVVYGEIRRGGQGAEIIHPEYKIQNHTGNVQLQETLTPIYPTTEGVRQATLRNLIDQA 170

Query: 179 LSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L  L    + E + ++L   +S  S+ +A + +H P       D E    PA  RL  +E
Sbjct: 171 LKLLDTCTINELLPEEL--SRSIISLPQALHTLHRPTPDIALVDLETGKHPAYRRLVLEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P+  E K+  + L  +PFSPT +Q+  + +I QD+++  
Sbjct: 229 LLAHHLSMLAVRAGVQRYHAQPLPTEDKLKPQFLNRLPFSPTHAQQRVVSEIEQDLAKDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   I V
Sbjct: 289 PMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRRWLEPLGIQV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+K  E IA+GQ  +I+GTHA+FQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQKQQEAIANGQVAMIVGTHAMFQEQVKFSGLALVIIDEQHRFGVHQRL 408

Query: 413 KL----TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     ++   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGREQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +E+I+R++   L E ++AYW+C  IE+      ++       L        + ++HGRM 
Sbjct: 469 EEIIKRIRNACLDENRQAYWVCTLIEDSDVLEAQAAQATSEELTLALPELKVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM++FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 529 AAEKQQVMEAFKCGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLS  +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AIASHCVLLYKTPLSSTARIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A       +L   ++ A+HI    P+    R    R L     Y  A
Sbjct: 649 ADLLRDQGMLPEIQRIARHIHQHYPE--HARALIERWLPERVHYGNA 693


>gi|119776507|ref|YP_929247.1| ATP-dependent DNA helicase RecG [Shewanella amazonensis SB2B]
 gi|119769007|gb|ABM01578.1| ATP-dependent DNA helicase RecG [Shewanella amazonensis SB2B]
          Length = 691

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 256/696 (36%), Positives = 392/696 (56%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV  + +  LSK+            DLLF+ P  + DR     I E+      T
Sbjct: 8   PVTELKGVAARVAEKLSKL------GVNTVQDLLFHLPLRYEDRTRIYAIDELIPGTTAT 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   +         ++R     + D +G +TL FF       KN    G  I   G+I+ 
Sbjct: 62  IEAEVISSQIV-NGRKRMLTCNVRDASGGLTLRFFNFSMAQ-KNGLQPGMTIRAFGEIRT 119

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
            K+++ ++HP Y    + +       +  +Y    GL    + ++  +AL +L    LPE
Sbjct: 120 GKHQLEIIHPEYKLTAAGESPSLADTLTPIYPTTEGLKQASWIRLTAQALEQLEEGGLPE 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            + + L  + +  S+A+A   +H P    +     +   PA++RL  +ELLA  +++L +
Sbjct: 180 LLPESL--QPNRLSLADAVRTLHRPPADAELWQLEQGQHPAQQRLVQEELLAHNLSMLKL 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++  ++   P+   G++  + L ++PF+PT +Q   + +I  DM++   M+R++QGDVG
Sbjct: 238 RERSNQDAAEPLAATGQLIPRFLESLPFAPTNAQSRVVAEIHADMTKATPMMRLVQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA ++  AA+E G Q  +MAP  +LA+QH     ++ +   + V  + G +    
Sbjct: 298 SGKTLVAALSALAAIENGCQVALMAPTELLAEQHAANFARWFEPLGLKVGWLAGKLKGKA 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT----QKAT 419
           R + LE IA G A +I+GTHA+FQ+ + + +L L I+DEQHRFGV QRL L     Q+  
Sbjct: 358 RTQTLEDIASGAAQMIVGTHAIFQEQVSFSRLALTIIDEQHRFGVHQRLGLREKGIQQGF 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR PI TV IP  R  +VIER++   
Sbjct: 418 FPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPITTVAIPDTRRLDVIERVRQAA 477

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L + ++AYW+C  IEE +    ++  +    L E      I ++HGRM   +K+++M  F
Sbjct: 478 LQDKRQAYWVCTLIEESEVLECQAAEDTAGGLKEALPELGIGLVHGRMKGAEKQAIMADF 537

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 538 KAGKLDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 597

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RL VL+ + DGF+IA++DL+ R  GE+LG +Q+G+ +  +A      +L+ 
Sbjct: 598 APLSFTAQARLGVLRESNDGFVIAQKDLELRGPGEVLGTRQTGLAQMKVADLVRDQALIP 657

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A+H++TQ PD  +V     R L    QY +A
Sbjct: 658 HIQKLARHLMTQAPD--NVDAIIERWLGGREQYVQA 691


>gi|261494245|ref|ZP_05990744.1| helicase RecG [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310097|gb|EEY11301.1| helicase RecG [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 693

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 265/698 (37%), Positives = 388/698 (55%), Gaps = 30/698 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   S  LS+I            DLLF+ P  + DR     I+++  E   T
Sbjct: 10  PLTALSGVGAAISEKLSRI------GINNVQDLLFHLPMRYEDRTRITPIADVRPESFAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I GY+ Q +  Q  KR    + L+D T +I L FF     M KN    G ++   G+IK+
Sbjct: 64  IEGYV-QLTEVQFGKRPILSVTLSDSTSKIMLKFFNFNAGM-KNSLATGVRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            +    + HP Y  I  N   V    +  +YS   GL     +K+  +AL+ L  +   E
Sbjct: 122 GRFMAEIHHPEYQIIRDNQPLVLAETLTPIYSTTEGLKQASLRKLTEQALALLEKVKVAE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            +  +    K   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  +
Sbjct: 182 LLPDEYNPHK--YSLKEALQLLHRPPPTISAEVLEKGDHPAQKRLIFEELLAHNLAMQQL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   K++    +  +  I Q+ L ++PF PT +Q     DI QD+++ + M+R++QGDVG
Sbjct: 240 RLGVKQQYAEALTYQTDIKQRFLDSLPFKPTHAQSRVTADIEQDLAKPHPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH      +     I V  + G +    
Sbjct: 300 SGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLNPFGIEVGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   LE I +G   +IIGTHALFQD+++++ L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RTAQLEAIKNGDVQMIIGTHALFQDNVEFHHLALVIIDEQHRFGVHQRLTLREKGAKENN 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV+I  +R  E+++R+    
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEDRRAEIVQRVYQAC 479

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             E ++AYW+C  I+E +    ++       L        I ++HGR+   +K+++M  F
Sbjct: 480 KQEHRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRLKPQEKQAIMAEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 540 KAANLDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLMYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL V+++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++ 
Sbjct: 600 PPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVADLMRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSI--RILLYLYQYNEA 693
           + ++ AK I++++        +++  R L    +Y  A
Sbjct: 660 LVQRYAKQIISEN----QPLAEALIKRWLDNKAEYTNA 693


>gi|293391661|ref|ZP_06635995.1| ATP-dependent DNA helicase RecG [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952195|gb|EFE02314.1| ATP-dependent DNA helicase RecG [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 693

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 258/686 (37%), Positives = 380/686 (55%), Gaps = 26/686 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL+   GVG      L K+            DLLF+ P  + DR     
Sbjct: 1   MSTQLLDAI--PLTVISGVGAAVVEKLGKL------GIFNLQDLLFHLPLRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++  E+  TI G + Q S  Q  +R    + L+DGT ++ L FF     M KN    G
Sbjct: 53  IADLQAEQYATIEG-VVQSSEVQFGRRPMLMVYLSDGTAKLALRFFNFNAGM-KNSLQPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++++ +    + HP Y  I  N   V    +  +Y    GL     +K+I +A
Sbjct: 111 ARVKAFGEVRRGRFMAEIHHPEYQIIHDNKPLVLAETLTPIYPSTEGLKQTTLRKLIGQA 170

Query: 179 LSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDE 232
           L  L   P  E +  +      F  +  A   +HNP          E   PA++RL ++E
Sbjct: 171 LLVLDKTPIAELLPAE-CNPHPF-DLKSAIQFLHNPPPDVSLTTLEEGKHPAQQRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   +     P++ +  +  + L  +PF PT +Q    +DI +DM+Q  
Sbjct: 229 LLAYNLAMQKVRSGIQANFAEPLSYQSDLKARFLAQLPFQPTNAQLRVTEDIERDMAQSY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALIAIDNGKQVALMAPTEILAEQHAVNFRRWFEPIGIQV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R   LE+I  G   +++GTHALFQ+ +++++L LVIVDEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKQRVAELEKIKSGAVQMVVGTHALFQEDVEFHRLSLVIVDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI T+ I  +R 
Sbjct: 409 MLREKGNQAGVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTIAISEDRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
            E+IER+ V    E ++AYW+C  I+E +    ++       L +      I ++HGRM 
Sbjct: 469 AEIIERVNVACTQEKRQAYWVCTLIDESEVLEAQAAEAVAEDLRKILPHLRIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM  FK     LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PNEKQAVMAQFKLVELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL V+++T+DGF+I+E+DL+ R  GE+LG KQ+G+ +F +
Sbjct: 589 STASFCVLMYKPPLGKISQKRLQVMRDTQDGFVISEKDLEIRGPGEVLGTKQTGITEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A       +L   +  AK ++ + P 
Sbjct: 649 ANLMRDRKMLPTVQFYAKQLVQKYPQ 674


>gi|153828335|ref|ZP_01981002.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 623-39]
 gi|148876165|gb|EDL74300.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 623-39]
          Length = 692

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 261/675 (38%), Positives = 389/675 (57%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFFNF-TAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + ++HP Y F          P +  VY    GL     + +  +AL+ L    + E
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQLTLRNLTDQALALLEKTAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDQQ--MTLAQALKIIHRPSTDIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAI 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+ + + M+R++QGDVG
Sbjct: 239 RSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIRVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 RETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++   
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+H
Sbjct: 539 KNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 APLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLVP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI  + P 
Sbjct: 659 QVQRIARHIHERYPQ 673


>gi|322515551|ref|ZP_08068533.1| DNA helicase RecG [Actinobacillus ureae ATCC 25976]
 gi|322118394|gb|EFX90657.1| DNA helicase RecG [Actinobacillus ureae ATCC 25976]
          Length = 693

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 269/696 (38%), Positives = 385/696 (55%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   +  LS+I            DLLF+ P  + DR     I ++  E   T
Sbjct: 10  PLTGLSGVGAAIAEKLSRI------GINNVQDLLFHLPYRYEDRTRITPIIDVRPESFST 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q +  Q  +R     +L+DGT +ITL FF     M KN    G ++   G+IK+
Sbjct: 64  IEG-IVQLTEVQFGRRPILSTVLSDGTSKITLKFFNFNAGM-KNSLTAGTRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            +    + HP Y  I +N        +  +YS   GL  +  +K+  +AL+ L  +   E
Sbjct: 122 GRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQNSLRKLTEQALALLDKIKVGE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
            +  +    K   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  +
Sbjct: 182 LLPDEYNPHK--YSLKEALQLLHRPPPDISAEQLEKGDHPAQKRLIFEELLAHNLAMQQV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R    + I  P+  +  +  + L ++PF PT +Q     DI QD+++ + M+R++QGDVG
Sbjct: 240 RVGVNQLIATPLRYQTDLKSRFLVSLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH      + +   I    + G +    
Sbjct: 300 SGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLRPFGIEAGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   LE I +G+  +IIGTHALFQ+S++++ L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RTVQLEAIKNGEIQMIIGTHALFQESVEFHNLTLVIIDEQHRFGVHQRLTLREKGAKDGI 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I  +R DE++ R+    
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAAC 479

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +E ++AYW+C  I+E +    ++       L        I ++HGRM   +K+ +M  F
Sbjct: 480 KNEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 540 KAANIDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL VL++++DGF IAE+DL+ R  GEILG KQ+GM +F  A       ++ 
Sbjct: 600 PPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKAANLMRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           + +  AK I+ Q+P L        R L    +Y+ A
Sbjct: 660 LVQNYAKQIIRQNPPLA--EALIRRWLGERTEYSNA 693


>gi|15602784|ref|NP_245856.1| hypothetical protein PM0919 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|20139711|sp|Q9CMB4|RECG_PASMU RecName: Full=ATP-dependent DNA helicase recG
 gi|12721238|gb|AAK03003.1| RecG [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 693

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 255/679 (37%), Positives = 382/679 (56%), Gaps = 24/679 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   S  L +I            DLLF+ P  + DR     I ++  +   T
Sbjct: 10  PLTTLSGVGAAISDKLGRI------GIHNLQDLLFHLPIRYEDRTRITPIHDLRPDAYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G + Q    Q  KR    + L+DGT +I L FF     M KN    G ++   G++K+
Sbjct: 64  IEGLV-QTCEVQFGKRPILNVSLSDGTSKIMLRFFNFNAGM-KNSLQPGARVKAFGEVKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
            +    + HP Y  I  N+  +    +  +YS   G+  +  +K+  +AL+ L    + E
Sbjct: 122 GRFMAEIHHPEYQIIRDNAPLILEETLTPIYSTTEGIKQNSLRKLTDQALAVLENIQIAE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            +  +        S+ EA   +H P      E     T PA++RL ++ELLA  +A+  +
Sbjct: 182 ILPNEFNPHPF--SLKEAIRFLHRPPPDVSLEALEKGTHPAQQRLIFEELLAHNLAMQKV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   ++    P++ +  + Q+ L  +PF+PT +Q    ++I QD++    M+R++QGDVG
Sbjct: 240 RIGTQQFSAYPLSYQTDLKQRFLAQLPFTPTDAQVRVTQEIEQDLTHPFPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ ++  I V  + G +    
Sbjct: 300 SGKTLVAALAALLAIDNGKQVALMAPTEILAEQHATNFRRWFESLGIEVGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----T 419
           R+  LE+I  GQ  +++GTHALFQD +++  L LVIVDEQHRFGV QRL L +K      
Sbjct: 360 RQTELEKIRTGQVQMVVGTHALFQDEVEFSDLALVIVDEQHRFGVHQRLMLREKGKQADH 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVV 478
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV I   R  EVI       
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEERRAEVIARVNHAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSF 537
           ++E ++AYW+C  I+E +    ++       L +      I ++HGRM   +K+ +M +F
Sbjct: 480 VNEKRQAYWVCTLIDESEVLEAQAAEAIAEDLRKILPHLRIGLVHGRMKPAEKQDIMQAF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y 
Sbjct: 540 KQAEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGTTASFCVLMYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL VL++T+DGF+I+E+DL+ R  GE+LG KQ+G+ +F +A       ++ 
Sbjct: 600 PPLGKISQKRLQVLRDTQDGFVISEKDLEIRGPGEVLGTKQTGVAEFKVANLMRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLTSV 676
             +  A+ ++ + P++ + 
Sbjct: 660 TVQYYARRLIVEQPEVATK 678


>gi|148260751|ref|YP_001234878.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146402432|gb|ABQ30959.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
          Length = 723

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 266/697 (38%), Positives = 421/697 (60%), Gaps = 16/697 (2%)

Query: 4   SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
             L P  A L++  G+G K +  +++             DLLF+ P  FIDR  +  ++E
Sbjct: 43  ESLAPFRAELASLPGIGPKLAALIAR-----AVGGPSVGDLLFHLPLHFIDRSRQSTLAE 97

Query: 64  ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                + T+   + +H +   ++ +P+++++ D +G   ++ F+         F  G K+
Sbjct: 98  AEPGSVATVMVEVVRHEA-PARRGQPHRVVIRDASGFGEVVLFHPGRL---GQFPVGAKL 153

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            ++GKI++  +R  + HP Y+   +Q  + P IE V  L  GL+  +  + +  AL+RLP
Sbjct: 154 LLSGKIERFADRPTLPHPDYVLPAAQAASLPAIEPVRGLTAGLTARVMARAVDGALARLP 213

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            LPEW    +LQK+ +P    A   +H P    D         RLAYDELLA Q+A  L+
Sbjct: 214 ELPEWQLPSVLQKRRWPGFTAALRTLHAPESMPDDRPA----RRLAYDELLARQLAFALI 269

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + ++  G     +G++    L    F+PT +Q +A+ +I  D++  +RMLR+LQGDVG
Sbjct: 270 RARRRRRPGRAFAGDGRLRAAALARFGFAPTDAQAAALAEIDADLAAPHRMLRLLQGDVG 329

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKTLVA +AM   VEAG QA ++AP  +LA+QH   ++K      + V ++TG++  A 
Sbjct: 330 AGKTLVATLAMLRVVEAGAQAALLAPTELLARQHLATLEKLC---PVPVALLTGSLRAAE 386

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR  L  +A G   I++GTHA+FQ S+ ++ L L ++DEQHRFGV+QR  L  K +A  +
Sbjct: 387 RRLVLAGLADGAIPIVVGTHAIFQKSVAFHDLGLAVIDEQHRFGVEQRFALGAKGSATDM 446

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL+L+  G++ +S+I  KPAGRKPI+T + P  R++E++  +  ++  G 
Sbjct: 447 LVMTATPIPRTLLLSHWGEMSVSRILAKPAGRKPIRTTLHPAGRMEEIVAAVARMIRRGG 506

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           + YW+CP + E +  +  +   RF +L E F   + + HGR     + + ++ F  G   
Sbjct: 507 RVYWVCPLVAESEAVDIAAAEARFAALAERFGERVVLAHGRQPIEIRAAALERFARGEAD 566

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG+DV +A++++IE A+ FGLAQLHQLRGRVGRG   S C+LL+   LS+ 
Sbjct: 567 ILVSTTVIEVGVDVPEANVMVIERADRFGLAQLHQLRGRVGRGAAASFCLLLHGDELSQA 626

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL++L+ TEDGF IA+ED + R  G+ILG KQSG+P + +A  E  + L+ +A+KDA
Sbjct: 627 ARRRLAILRETEDGFRIADEDFRLRGGGDILGAKQSGLPGYRLADAERDEDLIPMAQKDA 686

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             +L  DP L S RG++ R+LL+L++ + A + + AG
Sbjct: 687 TLLLDTDPHLESPRGRAARVLLHLFEQDRAIRALVAG 723


>gi|294674608|ref|YP_003575224.1| ATP-dependent DNA helicase RecG [Prevotella ruminicola 23]
 gi|294473780|gb|ADE83169.1| ATP-dependent DNA helicase RecG [Prevotella ruminicola 23]
          Length = 697

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 248/684 (36%), Positives = 381/684 (55%), Gaps = 21/684 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++ L   +    GVG      LS            + DLL Y+P  ++DR     I E++
Sbjct: 1   MDILNQDIKYLPGVGPNRKKMLS-----NELGIESYGDLLEYYPYKYVDRSKVYTIHELT 55

Query: 66  EERI-VTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            +   V + G+I    +F +  R+        DGTG   L +F    +  K  +  G + 
Sbjct: 56  GDMPFVQVVGHILSFETFPMGPRKERVVAHFTDGTGICDLTWFNGG-KYAKQNYKIGTEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEA 178
            V GK     NRI   HP     +  D+    ++  Y+        GL+    +++    
Sbjct: 115 LVFGKPTVFNNRINFTHPDLDDASKVDLTAMGLQPYYNTTEKMKKSGLNSRAIERLTKTL 174

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           + +LP  PE I   + Q         A   +H P+ AKD E     R RL ++EL   Q+
Sbjct: 175 IEKLPPQPETIPDFIYQPLHLVGRDFALRTVHYPQNAKDLERA---RLRLKFEELFFIQL 231

Query: 239 ALLLMRK-QFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            +L     Q +K  G   +  G +      + +PF  T +Q+  IK+I +DM    +M R
Sbjct: 232 NILRYASDQRRKFRGYVFSTVGDVFNTFYSQYLPFPLTGAQKRVIKEIRKDMGSGRQMNR 291

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKTLVAL++M  A++ G QA IMAP  ILA+QH + I  + ++  + V ++T
Sbjct: 292 LLQGDVGSGKTLVALMSMLIAIDNGYQACIMAPTEILAEQHLQTIMGFLKDMNLRVALLT 351

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G +    R + LE +  G  +I++GTHA+ +D++Q+ +L  V+VDEQHRFGV QR KL  
Sbjct: 352 GMVKGKRREEVLEGLLDGTINILVGTHAVIEDTVQFARLGFVVVDEQHRFGVAQRAKLWS 411

Query: 417 KATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           K+T  PHVL+MTATPIPRTL +T  GD+D+S I E P GRKP++T  +  +R+  + + +
Sbjct: 412 KSTNPPHVLVMTATPIPRTLAMTLYGDLDVSIIDELPPGRKPVQTTHVFDSRMTSLYDGI 471

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           +  ++EG++ Y + P IEE  +S+ +++ + F  L E F    ++ +HGRM   DKE  M
Sbjct: 472 RRQINEGRQVYIVFPLIEESAKSDLKNLEDGFEVLREAFPEFRLSKVHGRMKPKDKEEEM 531

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G  ++L+ATTVIEVG++V +AS+++I  A+ FGLAQLHQLRGRVGRG + S CIL
Sbjct: 532 QRFVRGETQILVATTVIEVGVNVPNASVMVILEAQRFGLAQLHQLRGRVGRGADQSYCIL 591

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHD 653
           +    LS+++  R+ ++ +T DGF IAE DLK R  G++ G +QSGM     IA      
Sbjct: 592 VTPFKLSEDTRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGMAFDLKIADIARDG 651

Query: 654 SLLEIARKDAKHILTQDPDLTSVR 677
            ++++AR +A+ I+ +DP+  S +
Sbjct: 652 QIVQMARDEAQKIIDEDPECNSEK 675


>gi|166368534|ref|YP_001660807.1| ATP-dependent DNA helicase RecG [Microcystis aeruginosa NIES-843]
 gi|166090907|dbj|BAG05615.1| DNA recombinase [Microcystis aeruginosa NIES-843]
          Length = 822

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 254/689 (36%), Positives = 401/689 (58%), Gaps = 29/689 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL     VG++ +  L K+      N  +  DLL+Y+P   ID   +  I+ ++E  
Sbjct: 125 LEQPLKYLAEVGERKAGLLEKL------NLHKVEDLLYYYPRDHIDYSRQVNIANLTEGE 178

Query: 69  IVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEM--------LKNVF 117
            VT+ G + + + F   K     I   LL D TG+I L  FY  T           K ++
Sbjct: 179 TVTLVGNVKRCNCFTSPKNTKLAIFELLLQDRTGQIKLNRFYAGTRYTNRAWQEGQKKLY 238

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFK 172
             G  + V+G +K  K  + + +P +   +S     + +    I  VY L  G+  DL +
Sbjct: 239 LVGSVVAVSGLVKAGKYGLTLENPEFELLDSSGASIESLKIGRILPVYPLTDGVPADLIR 298

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           K +V A   +  + + +   L ++     +  A   IH P  A   E  S AR RL +DE
Sbjct: 299 KAVVAAFGAVEAIKDPLPFGLRKQYGLIDLKTAITNIHFPNNA---EILSQARRRLVFDE 355

Query: 233 LLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
               Q+  L  R+Q+++       + +G++  +  + IPF  T +Q+  I++IL+D+   
Sbjct: 356 FFFLQLGFLRRRQQYRQTQKSAIFSAKGQLIDQFNQIIPFQLTNAQKRVIEEILEDLDSS 415

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVGSGKT+V + A+ AA+++G QA +MAP  +LA+QHY  +  +     + 
Sbjct: 416 TPMNRLVQGDVGSGKTIVGVYAILAALQSGYQAALMAPTEVLAEQHYRKLVSWFNLLHLP 475

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++TG+   A RR+   ++  G+  +++GTHAL QD++ + KL LV++DEQHRFGVQQR
Sbjct: 476 VELLTGSTKTAKRREIHAQLETGELPLLVGTHALIQDAVNFRKLGLVVIDEQHRFGVQQR 535

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            +L  K  +PHVL MTATPIPRTL LT  GD+D+S+I E P GR+PI+T  +  N+    
Sbjct: 536 ARLLSKGESPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQPIQTTALNGNQRRAA 595

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDID 529
            + ++  +++G++AY I P IEE ++ + R+ VE + +L E      +I ++HGRMS  +
Sbjct: 596 YDLIRREIAQGRQAYVIFPLIEESEKLDVRAAVEEYQNLSEKIFPNFNIGLLHGRMSSAE 655

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE ++ +F++   +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   
Sbjct: 656 KEEILTAFRDNILQIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGSHQ 715

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+LL     S NS  RL+VL+ ++DGF I+E D++ R  GE+LG +QSG+P F +A  
Sbjct: 716 SYCLLLSGSN-SANSRQRLTVLEQSQDGFFISEMDMRFRGPGEVLGQRQSGLPDFALASL 774

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRG 678
                +L +AR  A+ I+  DP L ++  
Sbjct: 775 VEDQEVLVLARDAAEKIMLDDPHLITLPN 803


>gi|197105084|ref|YP_002130461.1| ATP-dependent DNA helicase RecG [Phenylobacterium zucineum HLK1]
 gi|196478504|gb|ACG78032.1| ATP-dependent DNA helicase RecG [Phenylobacterium zucineum HLK1]
          Length = 691

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 283/700 (40%), Positives = 417/700 (59%), Gaps = 9/700 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFAP+++ +GVG + +  L K+            D+L+  P S I R     
Sbjct: 1   MRPEILFPLFAPITSLKGVGPRVAPLLEKVAG------PIVRDVLWLKPHSLI-RRTPAV 53

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           +S   +   +T    I  + + + +  +P+++ + D TG +TL+FF R  + L      G
Sbjct: 54  LSAARDGETMTFEVAIHGYQAPRTKA-QPWRVQVTDPTGFMTLVFFGRYGDQLAQRHPVG 112

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            +  V+GK+++      MVHP YI    +    P +EAVY    GL     +  ++EAL 
Sbjct: 113 ARRIVSGKVEESSFGRQMVHPDYILPPEKAGEIPELEAVYPATEGLPARRVRGFVLEALE 172

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           R P LPEW +   L+++ FP+   A   +HNP+   D    SP R RLA+DELLA Q+A+
Sbjct: 173 RAPELPEWQDPAFLRQEQFPAWRAAMERLHNPQSEADLSLLSPHRRRLAFDELLAHQLAM 232

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
               K  ++          + A+KI  ++PF  T +QE A+ +I  D+S   RM R++QG
Sbjct: 233 AQR-KAARRREPAARVAASETAEKIRADLPFRFTGAQERALAEIRADLSAGERMSRLVQG 291

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA+ AMA    +GGQ+ +MAP  ILA+QHYE I        +   ++TG   
Sbjct: 292 DVGSGKTVVAMCAMADVAASGGQSALMAPTEILARQHYETISGPLAAHGVGTVLLTGRDK 351

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            A RR+ L  +A G+A + +GTHALFQD + + KL LV++DEQHRFGV +R +L  K  A
Sbjct: 352 GAARREKLAALASGEARVAVGTHALFQDEVAFQKLQLVVIDEQHRFGVAERQRLQAKGEA 411

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            H++ M+ATPIPRTL LT  GD+D+S+I EKP GR P+ T   P+ R  EV  RL+  + 
Sbjct: 412 THLIAMSATPIPRTLELTVYGDLDVSRIDEKPPGRTPVATRAAPMTRAHEVEARLREAVQ 471

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G +A+WICP + E + ++  +   R   L E    S+ ++HGR+    K++VM  F  G
Sbjct: 472 GGAQAFWICPLVSESEATDLAAAERRAAELTERIGPSVGLVHGRLPPAAKDAVMAEFAEG 531

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTV+EVG++V +A+I++IE AE FGLAQLHQLRGRVGRG   S+C+LLY PPL
Sbjct: 532 RLSVLVATTVVEVGVNVPNATIMVIEQAERFGLAQLHQLRGRVGRGRRESACVLLYDPPL 591

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+ +  RL +L+ T+DGF+IAE+DL+ R  G+ LG++QSG P +  A P  H  L+  A 
Sbjct: 592 SETAQQRLDILRRTDDGFVIAEKDLELRGGGDALGLRQSGFPDYAFADPIAHRDLIAAAG 651

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            DA+ I+ +DP+L   RG+++++L  L+ +        AG
Sbjct: 652 DDARLIVMRDPELAGERGKALQVLQELFDWKANLGLRDAG 691


>gi|114561544|ref|YP_749057.1| ATP-dependent DNA helicase RecG [Shewanella frigidimarina NCIMB
           400]
 gi|114332837|gb|ABI70219.1| ATP-dependent DNA helicase RecG [Shewanella frigidimarina NCIMB
           400]
          Length = 705

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 258/696 (37%), Positives = 389/696 (55%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GV KK +  L+K+            D+LF+ P  + DR     I+ +      T
Sbjct: 22  PITDLKGVAKKVAEKLAKL------GIKTVQDVLFHLPLRYEDRTQIHPIAALPPGSFGT 75

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I      Q  +RR     ++D +G ++L FF       +N    G  I   G+I++
Sbjct: 76  IEAEIQSTQIMQ-GRRRMLVCNVHDHSGMMSLRFFNFSMAQ-RNAMENGASIRAYGEIRR 133

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
             +   +VHP Y I H  + V     +  +Y    G+    + K+  +AL+ L    LPE
Sbjct: 134 GNHHKEIVHPEYQIIHPGESVTLSDTLTPIYPTTEGVKQASWIKLTEQALAMLDQGGLPE 193

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKA----KDFEWTSPARERLAYDELLAGQIALLLM 243
            +   L  + +  S+ +A +I+H P  +    +  +   PA++RL  +ELLA  +++L +
Sbjct: 194 LLPSAL--QPNNISLRDALHILHRPHSSVSPFELEQGQHPAQQRLIQEELLAHNLSMLQL 251

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++  ++  +P+   G++    L  +PF PT +Q+  + +I QD+     M+R++QGDVG
Sbjct: 252 RQRSNQDAAVPMPATGQLLSPFLAQLPFKPTGAQQRVVAEINQDLQHPTPMMRLVQGDVG 311

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   + V  + G +    
Sbjct: 312 SGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAANFATWFEPLGLKVGWLAGKLKGKA 371

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R ++LE IA G A ++IGTHA+FQ ++ + KL L+I+DEQHRFGV QRL L +    +  
Sbjct: 372 RIQSLEDIASGAAQMVIGTHAIFQQAVVFNKLALIIIDEQHRFGVHQRLGLREKGVSQGF 431

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV I   R ++VIER+K   
Sbjct: 432 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIADTRREQVIERVKQAA 491

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L + ++AYW+C  IEE +    ++  +    L        I +IHGRM   +K+++M  F
Sbjct: 492 LHDNRQAYWVCTLIEESEVLECQAAEDTAAELTIALPELKIGLIHGRMKSAEKQTIMAQF 551

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 552 KAGELNLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 611

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS+ +  RL VL+N+ DGF+IA++DL+ R  GE+LG KQ+G+    IA       L+ 
Sbjct: 612 APLSQTATKRLGVLRNSNDGFVIAQKDLEIRGPGEVLGTKQTGLADLKIADLIRDQHLIA 671

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +K A H+  Q P   +V     R +    QY +A
Sbjct: 672 PTQKLASHVYQQVP--QNVDAIIQRWIGDRQQYVQA 705


>gi|296100479|ref|YP_003610625.1| ATP-dependent DNA helicase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295054938|gb|ADF59676.1| ATP-dependent DNA helicase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 693

 Score =  583 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 254/689 (36%), Positives = 376/689 (54%), Gaps = 26/689 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL++  GVG   S  L KI            DLL + P  + DR    K
Sbjct: 1   MKGRLLDAI--PLNSLTGVGAAQSSKLGKI------GLHTVQDLLLHLPLRYEDRTQLYK 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      T+ G +  + +     RR     ++DGTG +T+ FF     M KN    G
Sbjct: 53  IGDLLPAIYATVEGEVL-NCNITFGGRRMMTCQISDGTGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGIKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTCAITELLAPELAQ--GMMSLPEALRTLHRPPPTLQLSDLESGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   +     P++   ++  K+L ++PF PT +Q     +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQHFHAQPLSPRDELKDKLLASLPFKPTGAQARVTAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRAWFAPLGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    + IA G+  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARLAQQDAIARGEVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGLQQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE      ++    +  L        + ++HGRM 
Sbjct: 469 SDIIDRVRNACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELKVGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM SFK G   LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQAVMQSFKQGELHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLYKAPLSKTAQMRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTS 675
           A      +++   ++ A+HI  + P+  +
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYPEQAA 677


>gi|326387811|ref|ZP_08209417.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207857|gb|EGD58668.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 690

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 280/702 (39%), Positives = 427/702 (60%), Gaps = 19/702 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA   + +GVG   +  L K+        TR  DL+++ P  F+ R    +
Sbjct: 6   MRPDLLNPLFAETESLKGVGPGLARPLEKL------GLTRVRDLVYHLPDRFVSRRAVTR 59

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFE 119
           + E      + I   + +H       R P+++L  D  G+I TL +F R +   + +   
Sbjct: 60  LDEAGIGENIVIGLTVREHR--ASAGRGPFRVLAEDDAGDIVTLTYFGRASYTARKLLPV 117

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + G++ +      +VHP ++  +S ++   L E VY L  GL+      ++ +AL
Sbjct: 118 GERRWIAGRLDQFGQMRQIVHPDHVAQDSGELTAHLTEPVYPLSEGLTQGRIAGLVHQAL 177

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             LP LPEW+E  LL ++++P+ AEA                + AR+RLAYDELLA  +A
Sbjct: 178 GHLPHLPEWVEPGLLAREAWPNWAEAV-------AEAHKGENAKARDRLAYDELLANSLA 230

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+L+R   +   G+P++ +G + +++  ++PFS T +Q+ AI ++  D++Q   MLR+LQ
Sbjct: 231 LMLVRASNRTRRGLPLHGDGHLRKRL--DLPFSLTGAQQRAIAEVEADLAQGAPMLRLLQ 288

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT VAL AM  AVEAG QA ++AP  ILA+QH E +++    T + + ++TG  
Sbjct: 289 GDVGSGKTAVALHAMLIAVEAGAQAAMLAPTEILARQHAETLRRMAAGTGVTIALLTGRD 348

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA- 418
               R   L  +  G   I +GTHA+FQ+++ Y  L LV++DEQHRFGV QRL LTQKA 
Sbjct: 349 KGKAREATLMGLLDGSIQICVGTHAIFQEAVAYRNLALVVIDEQHRFGVGQRLMLTQKAR 408

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           T  H L MTATPIPRTL L   G++D+S++ E P GR+PI T ++  +R++EVI  +   
Sbjct: 409 TTAHCLAMTATPIPRTLTLAQYGEMDVSRLDEMPPGRQPIDTRVVSTDRVEEVIAGIGRH 468

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L++G +AYW+CP + E++  +  +   R   L E F   + ++HG++    K++ M+ F 
Sbjct: 469 LAKGGQAYWVCPMVREQETEDLAAAEARHALLKERFGDGVELVHGQLRPEAKDAAMERFA 528

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   LL+ATTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG   S+C+LL   
Sbjct: 529 RGEAGLLVATTVIEVGVDVPNATLMVIEHAERFGLAQLHQLRGRVGRGTGRSTCLLLRGE 588

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            LS+    RL++++ T+DGFL+AEEDL+ R  GE+LG +QSG   F +A  +    LL +
Sbjct: 589 ALSETGRERLALMRETQDGFLLAEEDLRLRGGGELLGTRQSGDTPFRVASFDQIARLLPL 648

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A  DA+ ++ +D  L+S RG++ R+LLYL++ +   Q +R G
Sbjct: 649 AHDDARLLMERDGGLSSPRGEAARVLLYLFERDWGVQLLRGG 690


>gi|169632337|ref|YP_001706073.1| ATP-dependent DNA helicase RecG [Acinetobacter baumannii SDF]
 gi|169151129|emb|CAO99795.1| ATP-dependent DNA helicase [Acinetobacter baumannii]
          Length = 681

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 260/672 (38%), Positives = 388/672 (57%), Gaps = 21/672 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             +   +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R  
Sbjct: 2   TSVHQLQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLMVGRTY 55

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G +     F   KR+    L+ D  G++TL F++     L +    G ++ + G+++
Sbjct: 56  LLEGEVKSV-DFPPGKRKSMAALIQDEFGKVTLRFYHIYKN-LTDKIKPGNRLRIFGEVR 113

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
                + + HP     N         + A+Y    GL+    ++ + +AL      LPE 
Sbjct: 114 VGARGLELYHPEIQLINEHTTLPKTQLTAIYPSTDGLTQAKLREYVKQALKHHSDALPEL 173

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244
           + K      +     EA + IH P    +     + + PA++RL ++EL+A QI+LL  R
Sbjct: 174 LPKQYTNGYAL---KEALHYIHEPPIDANMIQLAQDSHPAQQRLIFEELVAHQISLLTRR 230

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              ++           +A+K+L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+
Sbjct: 231 AYIRQIASPAFPSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGA 290

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R
Sbjct: 291 GKTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKAR 350

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---AP 421
             A  +I  G A +I+GTHALFQD++++ KL LVI+DEQHRFGV QRL L  K      P
Sbjct: 351 AHAERQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGAEQLTP 410

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     E
Sbjct: 411 HQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCRE 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           GK+AYW+C  +E+ +  + ++    +  + E F   +I ++HG+M   +K++VM +FKN 
Sbjct: 471 GKQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNN 530

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG + S C+LLY PPL
Sbjct: 531 ELQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKPPL 590

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A 
Sbjct: 591 SQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAH 650

Query: 661 KDAKHILTQDPD 672
             A+ +L   P+
Sbjct: 651 YVAQQVLKDYPE 662


>gi|256820801|ref|YP_003142080.1| ATP-dependent DNA helicase RecG [Capnocytophaga ochracea DSM 7271]
 gi|256582384|gb|ACU93519.1| ATP-dependent DNA helicase RecG [Capnocytophaga ochracea DSM 7271]
          Length = 704

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 250/717 (34%), Positives = 380/717 (52%), Gaps = 32/717 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M P   N L  P++  RGVG + +  L   ++        + DLL   P+ +IDR    K
Sbjct: 1   MIPE--NILHTPINYLRGVGNQRAELLKTELS-----IYEYQDLLNLFPNRYIDRTKFYK 53

Query: 61  ISEISEER-IVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVF 117
           I+E+      V + G I    + +   QK         D TG + L++F +  + L+   
Sbjct: 54  INELQNNNAEVQLVGKIVNLRTVESAHQKGTRLVATFVDDTGTMELVWF-KGLKWLRESL 112

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-QDVNFPLIEAVYSLPTGL-----SVDLF 171
                  + GK+        M HP     +  +      I+ VY     L     +  + 
Sbjct: 113 KINEPYVIFGKLNFFGGTFSMPHPEMDLLSEFKKAGHSSIQPVYPSTEKLAKRNITNRVM 172

Query: 172 KKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
           ++++      +     E +  ++L   +  S  EA   IH P         S    RL +
Sbjct: 173 RQLVQTVFEEVGNSFAENLPDNILVSMNLISKQEAMRNIHFPTNQTLLTKASV---RLKF 229

Query: 231 DELLAGQIALLLMRKQFKKEIGI---PINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQ 286
           +EL   Q+   L+RK    +      P    G         ++PF  T +Q+  +K+I  
Sbjct: 230 EELFYIQV--QLVRKNLLHKQKFQGQPFKNVGDAFMNFYNHHLPFPLTDAQKRVLKEIRA 287

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           D+    +M R+LQGDVGSGKT+VAL+ M  AV+ G QA +MAP  ILA QHY+ I +  +
Sbjct: 288 DVGSNVQMNRLLQGDVGSGKTIVALMTMLLAVDNGCQACLMAPTEILANQHYQNISELLK 347

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
            T + V ++TG+     R+   E++  G+  I+IGTHAL ++ +Q+  L L I+DEQHRF
Sbjct: 348 ETGVTVALLTGSSKTKERKMLDEQLQSGELSILIGTHALLENKVQFRNLGLAIIDEQHRF 407

Query: 407 GVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           GV+QR KL  K T  PH+L+MTATPIPRTL ++  GD+DIS I E P GRKPIKT+    
Sbjct: 408 GVEQRSKLWHKNTIPPHILVMTATPIPRTLAMSVYGDLDISIIDELPPGRKPIKTLHQFE 467

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIH 522
           N   E  E +K  + +G++AY + P IEE +  +F+++ E ++ +   F      ++++H
Sbjct: 468 NHRAETYEFIKKEIDKGRQAYVVYPLIEESEALDFKNLTEGYDYITASFPLPKYKVSMVH 527

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GR+   +K++ MD F     ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGR
Sbjct: 528 GRLKPAEKDAEMDRFLRNETQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGR 587

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG E S CILL    +S ++ TR+  +  T DGF IAE DLK R  G+++G +QSG+ 
Sbjct: 588 VGRGSEQSYCILLTGNKMSNDTCTRMETMVRTNDGFEIAEVDLKLRGPGDLMGTQQSGVL 647

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY-LYQYNEAFQFIR 698
              IA       +L+ AR  A  +L  DP+L   + Q I   LY L +Y   + +I 
Sbjct: 648 ALKIADLVKDQDILKAARFQAIDLLKADPNLELPQNQRIAHTLYQLQRYKNLWTYIS 704


>gi|120436677|ref|YP_862363.1| ATP-dependent DNA helicase RecG [Gramella forsetii KT0803]
 gi|117578827|emb|CAL67296.1| ATP-dependent DNA helicase RecG [Gramella forsetii KT0803]
          Length = 699

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 244/690 (35%), Positives = 386/690 (55%), Gaps = 21/690 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
             N L  P+   +GVG   S  L K +     N   + DL+ + P+ +ID+    KI+++
Sbjct: 2   IQNLLQTPIEYLKGVGPNRSEVLKKEL-----NIQYYRDLINFFPNRYIDKTGFYKINQL 56

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 V I G I+     + ++ +       D TG++ L++F R  + ++         
Sbjct: 57  QRNSSEVQIVGKITHLKMVEQKRGKRLVADFIDDTGKMELIWF-RGHKWIRENLKLNTPY 115

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPT-----GLSVDLFKKIIVE 177
            + GK         M HP          N  P ++ +Y         G++  +  K++ E
Sbjct: 116 VIFGKTNSYNGAFSMPHPEMELVADYKKNLRPAMQPIYPSTEMLGKKGITNRVIMKLMQE 175

Query: 178 ALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            L +  +   E +  DL+ +    S AEA   IH P+     E  + A+ RL ++EL   
Sbjct: 176 VLQQTGLKFSESLNADLIDELKLISKAEALFNIHFPKNQ---ELLAKAQFRLKFEELFFI 232

Query: 237 QIALLLMRKQFKKEIG-IPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRM 294
           Q+ LL      K++I     +  G+        ++PF  T +Q+  IK+I  DM    +M
Sbjct: 233 QLQLLRKNMLHKQKIKGFNFDQIGEYFNNFYQEHLPFDLTGAQKRVIKEIRADMGSGAQM 292

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVGSGKT+VAL++M  A++ G QA +MAP  IL+ QHY  + +  ++  I + +
Sbjct: 293 NRLLQGDVGSGKTIVALMSMLIALDNGFQACLMAPTEILSIQHYHGLAELCKDLNIEIFL 352

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+   A RR+  E++ +G+  I+IGTHAL +D +++  L L ++DEQHRFGV QR KL
Sbjct: 353 LTGSTKTAKRREIHEKLENGEIDILIGTHALLEDKVKFKNLGLAVIDEQHRFGVAQRAKL 412

Query: 415 -TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             +    PHVL+MTATPIPRTL ++  GD+DIS I E P GRKP+KTV    +   +V  
Sbjct: 413 WKKNHIPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPVKTVHRFDSNRLKVFR 472

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
            +K  + +G++ Y + P I+E ++ +++ +++ + S+   F    I+I+HG+M   DK+ 
Sbjct: 473 FIKEEVQKGRQVYVVYPLIQESEKMDYKDLMDGYESIAREFPEFQISIVHGQMKPADKDY 532

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            MD F     ++++ATTVIEVG+++ +AS++IIE+AE FGL+QLHQLRGRVGRG E S C
Sbjct: 533 EMDRFVRAETQIMVATTVIEVGVNIPNASVMIIESAERFGLSQLHQLRGRVGRGAEQSFC 592

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           IL+    LS +S TRL  + +T DGF IAE DLK R  G+++G +QSG+    IA     
Sbjct: 593 ILMTGHKLSNDSKTRLETMTSTNDGFEIAEVDLKLRGPGDLMGTQQSGVLNLKIADIVKD 652

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           +S+L++AR  A  +L  DP+L+  +   ++
Sbjct: 653 NSILQLARNYASRLLKADPNLSQEKHVMVK 682


>gi|146300684|ref|YP_001195275.1| ATP-dependent DNA helicase RecG [Flavobacterium johnsoniae UW101]
 gi|146155102|gb|ABQ05956.1| ATP-dependent DNA helicase RecG [Flavobacterium johnsoniae UW101]
          Length = 702

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 243/708 (34%), Positives = 385/708 (54%), Gaps = 25/708 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P+   +GVG      L K +        ++ DL+ ++P+ +IDR    KI+E+  
Sbjct: 4   NLLETPIEYLKGVGPSRGQLLRKEL-----GIHKYGDLVNFYPNRYIDRTRYYKINELQN 58

Query: 67  -ERIVTITGYISQHSSFQL-QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
               V I G I    + +  + ++       D TG+I L +F +  + ++        + 
Sbjct: 59  TGSEVQIIGKIINIKTVEFAKNKKRLVASFVDDTGQIELNWF-QGHKWIRESLKLNEPLV 117

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPT-----GLSVDLFKKIIVEA 178
           + GK     ++  M HP     +  + +    ++ VY         G+S     K++ + 
Sbjct: 118 IFGKCSLYGSQFSMAHPEIELLSEHEKSLRSAMQPVYPSTETLTNRGISNRTINKMMEQL 177

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
                 +  E     LL++    S   A   IH P+ A   +  + A+ RL ++EL   Q
Sbjct: 178 FIETGALFTETFPPYLLEEVKLISKRAALFNIHFPKSA---DALAKAQFRLKFEELFFIQ 234

Query: 238 IALLLMRKQFKKEIG-IPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRML 295
           + L+      K +I   P    G++  +  + ++PF  T +Q+  IK+I  DM    +M 
Sbjct: 235 LQLITKNLIRKHKIKGHPFTKVGELFNEFYQNHLPFDLTNAQKRVIKEIRSDMGSNAQMN 294

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT+V  ++M  A++ G QA +MAP  ILA QH+  + ++     I ++I+
Sbjct: 295 RLLQGDVGSGKTIVGFMSMLLAIDNGFQACLMAPTEILANQHFIGLSEFANTLNISIKIL 354

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG+   + RR   E + +G   I+IGTHAL +D +++  L L I+DEQHRFGV+QR KL 
Sbjct: 355 TGSTKTSERRIIHEDLENGSLQILIGTHALLEDKVKFKNLGLAIIDEQHRFGVEQRSKLW 414

Query: 416 QKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
           +K    PHVL+MTATPIPRTL ++  GD+D+S I E P GRKPI+TV        +V + 
Sbjct: 415 KKNEIPPHVLVMTATPIPRTLAMSLYGDLDVSVIDELPPGRKPIQTVHRFDTNRLKVWKF 474

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKE 531
           L+  +++G++ Y + P I+E ++ +++ +++ + S+   F     SI+I+HG+M   DK+
Sbjct: 475 LRDEIAKGRQIYIVYPLIQESEKMDYKDLMDGYESISRDFPLPQYSISIVHGKMKPADKD 534

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           + M  F  G   +++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E S 
Sbjct: 535 AEMKRFSEGKTNIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGAEQSY 594

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           CIL+    LS +S TR+  +  T DGF IAE DLK R  G+++G +QSG+    IA    
Sbjct: 595 CILMTGHKLSSDSKTRMETMVQTNDGFEIAEVDLKLRGPGDLMGTQQSGVLNLQIADIVK 654

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIR-ILLYLYQYNEAFQFIR 698
              +L  AR  A  IL +DP L       ++ + L L +    + +I 
Sbjct: 655 DREILSFARNYALKILKEDPPLQKPEHAILKTVFLELTKRKNIWNYIS 702


>gi|145639715|ref|ZP_01795318.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           PittII]
 gi|145271272|gb|EDK11186.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           PittII]
 gi|309750684|gb|ADO80668.1| ATP-dependent DNA helicase [Haemophilus influenzae R2866]
          Length = 693

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 255/688 (37%), Positives = 390/688 (56%), Gaps = 26/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLLF+ P  + DR     
Sbjct: 1   MSLELLDAV--PLTSLSGVGAAISNKLAKI------GIQNLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +  E+  TI G I Q       +R    + L+DGT +I L FF     M +N F  G
Sbjct: 53  IANLRPEQYFTIEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G+IK+ ++   + HP Y  +  N+  V    +  +YS   GL  +  +K+  +A
Sbjct: 111 VRVKAFGEIKRGRHMSEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E +  +    +   S+ EA  ++H P      E       PA++RL ++E
Sbjct: 171 LALLDKVQIAEILPNEFNPHQ--YSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +  
Sbjct: 229 LLAHNLAMQKVRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R 
Sbjct: 409 MLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
            E++       ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM 
Sbjct: 469 AEIVMRVKNACVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +
Sbjct: 589 STASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
           A       ++   +  AK ++ + PD+ 
Sbjct: 649 ANLMRDRKMIPTVQHYAKLLIQKYPDVA 676


>gi|148827157|ref|YP_001291910.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae PittGG]
 gi|148718399|gb|ABQ99526.1| ATP-dependent DNA helicase [Haemophilus influenzae PittGG]
          Length = 693

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 253/688 (36%), Positives = 389/688 (56%), Gaps = 26/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +   L++  GVG   S  L+KI            DLLF+ P  + DR     
Sbjct: 1   MSLELLDAV--SLTSLSGVGAAISNKLAKI------GIHNLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +  E+  TI G I Q       +R    + L+DGT +I L FF     M +N F  G
Sbjct: 53  IANLRPEQYFTIEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++K+ ++   + HP Y  +  N+  V    +  +YS   GL  +  +K+  +A
Sbjct: 111 VRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E +  +    +   S+ EA  ++H P      E       PA++RL ++E
Sbjct: 171 LALLDKVQIAEILPNEFNPHQ--YSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +  
Sbjct: 229 LLAHNLAMQKVRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFKPFGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R 
Sbjct: 409 MLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
            E++       ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM 
Sbjct: 469 AEIVMRVKNACVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +
Sbjct: 589 CTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
           A       ++   +  AK ++ + PD+ 
Sbjct: 649 ANLMRDRKMIPTVQHYAKSLIQKYPDVA 676


>gi|172035243|ref|YP_001801744.1| ATP-dependent DNA helicase RecG [Cyanothece sp. ATCC 51142]
 gi|171696697|gb|ACB49678.1| ATP-dependent DNA helicase [Cyanothece sp. ATCC 51142]
          Length = 819

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 241/688 (35%), Positives = 385/688 (55%), Gaps = 29/688 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   L+    VG K    L ++            D+LFY+P   ID   +  IS +    
Sbjct: 122 LDQSLNNLAEVGYKRGELLKRL------GLHTVKDILFYYPRDHIDYARQVAISNLVAGE 175

Query: 69  IVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEM--------LKNVF 117
            VTI G + + + F   K +   I   +L D TG I L  F+  T           K ++
Sbjct: 176 TVTIVGTVKRCNCFTSPKNKKLSIFELILRDHTGHIKLNRFFAGTRFTSRGWQERQKRIY 235

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFK 172
             G  +  +G +K+ +  I + +P     +S     + +    +  VY L  G+  DL +
Sbjct: 236 PLGSIVAASGLVKQNRYGITLDNPEIEVLDSVGSSIESLKIGRVLPVYPLTEGVGADLIR 295

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           K I+ +L  +  + + + + L ++     + +A   IH P      E  + AR RL +DE
Sbjct: 296 KAIIASLEAIKQIRDPLPRVLREQYGLMGLKDAIGNIHFPETP---ELLAHARRRLVFDE 352

Query: 233 LLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
               Q+  L  R++ K+         +GK+ ++    +PF  T +Q+  I +IL+D++  
Sbjct: 353 FFYLQLGFLQRRQEQKQVHNSAVFTPQGKLIKQFDDILPFKLTNAQQRVINEILEDLNSV 412

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVG+GKT+VA+ A+ AA+++G QA +MAP  +LA+QHY     +     + 
Sbjct: 413 TPMNRLVQGDVGAGKTIVAVFAILAALQSGYQAALMAPTEVLAEQHYRKFIPWFNQLYLP 472

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++TG+  +A R +   ++  G+  +++GTHAL QD + + KL LV++DEQHRFGVQQR
Sbjct: 473 VELLTGSTKKAKREEIHRQLQTGELPLLVGTHALIQDPVNFQKLGLVVIDEQHRFGVQQR 532

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            KL  K  +PHVL MTATPIPRTL LT  GD+D+S+I E P GR+ I+T ++      + 
Sbjct: 533 AKLLAKGKSPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQAIQTTVLTGKERTQA 592

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDID 529
            + ++  +++G++ Y I P IEE ++ + ++ VE    L E       I ++HGRMS   
Sbjct: 593 YDLIRREVAQGRQVYIIFPMIEESEKLDVKAAVEEHKKLSEKVFPDFKIGLLHGRMSSTA 652

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+ V+ +F++   +++++TTVIEVG+DV +A+I++IENAE FGL+QLHQLRGRVGRG   
Sbjct: 653 KDEVLTAFRDNEYQIIVSTTVIEVGVDVPNATIMLIENAERFGLSQLHQLRGRVGRGSHK 712

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+     + +   RL+VL+ ++DGF I+E DL+ R  G +LG +QSG+P F +A  
Sbjct: 713 SYCLLMSSSK-TPDVRQRLTVLEQSQDGFFISEMDLRFRGPGTVLGTRQSGLPDFALASL 771

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVR 677
                +LE+AR  A+ I+  D  L S+ 
Sbjct: 772 VEDQEVLELARLAAEKIIVADQTLGSLP 799


>gi|229527364|ref|ZP_04416756.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 12129(1)]
 gi|229334996|gb|EEO00481.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 12129(1)]
 gi|327485181|gb|AEA79588.1| ATP-dependent DNA helicase RecG [Vibrio cholerae LMA3894-4]
          Length = 692

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 260/675 (38%), Positives = 389/675 (57%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFFNF-TAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + ++HP Y F          P +  VY    GL     + +  +AL+ L    + E
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDIEPNLTPVYPTTEGLRQLTLRNLTNQALALLDKSAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDQQ--MTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAI 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+ + + M+R++QGDVG
Sbjct: 239 RSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 RETQLARIASGEVKMVVGTHALFQEQVSFDNLALVIIDEQHRFGVHQRLELREKGAKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++   
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERIRHAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQTVMQAF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+H
Sbjct: 539 KNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 APLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLVP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI  + P 
Sbjct: 659 QVQRIARHIHERYPQ 673


>gi|262190096|ref|ZP_06048387.1| ATP-dependent DNA helicase RecG [Vibrio cholerae CT 5369-93]
 gi|262034026|gb|EEY52475.1| ATP-dependent DNA helicase RecG [Vibrio cholerae CT 5369-93]
          Length = 692

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 260/675 (38%), Positives = 389/675 (57%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFFNF-TAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + ++HP Y F          P +  VY    GL     + +  +AL+ L    + E
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDQQ--MTLAQALKIIHRPSAEIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAI 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q ++++ +P+    ++ Q++L  +PF+PTK+Q+  + +I  D+ + + M+R++QGDVG
Sbjct: 239 RSQGQQDVALPLAPVHQLKQQLLAQLPFTPTKAQQRVVAEIEADLEKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 RETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++   
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQTVMQAF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+H
Sbjct: 539 KNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 APLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLVP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI  + P 
Sbjct: 659 QVQRIARHIHERYPQ 673


>gi|332995097|gb|AEF05152.1| ATP-dependent DNA helicase RecG [Alteromonas sp. SN2]
          Length = 690

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 257/696 (36%), Positives = 389/696 (55%), Gaps = 25/696 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            P++  +GVG K +  L+KI            D+LF+ P  + DR     ++E      V
Sbjct: 7   TPITALKGVGAKVAEKLAKI------GLFTLQDVLFHLPLRYEDRTRVYSVAECRPFTHV 60

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           ++ G +   +  Q  K+R   + L+DGTG ITL FF+    + + +   G  I   G+++
Sbjct: 61  SVQGEVKS-ADIQYGKKRMLVVKLSDGTGTITLRFFHFGA-VQRTMMTPGNLIRCFGEVR 118

Query: 131 KLKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
             K  I M+HP +   +    +    +  VY    G+     + +  +AL  L    L +
Sbjct: 119 TGKWGIEMMHPEFKLIDEDAPLEAESLTPVYPTTEGVKQLTLRNLTDQALKMLDKGALAD 178

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            + + +   +   S+ EA + +H P    D     E   PA+ RL  +ELL+  +++L +
Sbjct: 179 LLPEGMYSDQ--ISLNEALHAVHRPAPDTDVHEMEEGLHPAQYRLILEELLSHHLSVLKV 236

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           RK    + GI I V+  + +K+L  +PFSPT +Q+  + DI QDM     M+R++QGDVG
Sbjct: 237 RKLSDAQPGISIKVDKPLIEKMLAQLPFSPTGAQQRVVADIQQDMQHPRPMMRLVQGDVG 296

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A  +A+ AG Q  +MAP  +LA+QH    +++     I +  + G +    
Sbjct: 297 SGKTLVAALAALSAIGAGHQVALMAPTELLAEQHANNFREWFAPLGIEIGWLAGKLKGKA 356

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT----QKAT 419
           R + L R+  G   +++GTHA+FQ+S+ Y +L LVIVDEQHRFGV QRL L     Q+  
Sbjct: 357 RTEVLARLESGDVQMLVGTHAIFQESVNYQQLALVIVDEQHRFGVHQRLALRDKGEQQGR 416

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV++P +R  +VIER++   
Sbjct: 417 YPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVVLPDSRRGDVIERVRTAC 476

Query: 480 SE-GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            E G++AYW+C  I+E +    ++  +    L       ++ ++HGR+   +K  VM  F
Sbjct: 477 KENGRQAYWVCTLIDESEVLECQAAEDAAVILRTALPELNVGLVHGRLKPAEKLQVMADF 536

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV +ASI+IIEN E  GLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 537 KAGELDLLVATTVIEVGVDVPNASIMIIENPERLGLAQLHQLRGRVGRGAVESQCVLMYQ 596

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL+VL+ + DGF IA+ DL+ R  GE +G +Q+GM +  IA      +L+ 
Sbjct: 597 SPLSKTATQRLTVLRESNDGFYIAQRDLEIRGPGEFMGTRQTGMAELKIADLVRDAALIP 656

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             ++ A  +  Q P  +  +    R + +  QY  A
Sbjct: 657 KVQEIAYTLWEQYP--SHAQAIINRWIGHKEQYGHA 690


>gi|150025089|ref|YP_001295915.1| ATP-dependent DNA helicase RecG [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771630|emb|CAL43104.1| ATP-dependent DNA helicase RecG [Flavobacterium psychrophilum
           JIP02/86]
          Length = 701

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 249/710 (35%), Positives = 394/710 (55%), Gaps = 26/710 (3%)

Query: 6   LNPLF-APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +N LF  P+   +GVG +    L K +        ++ DL+ ++P+ ++DR    KISE+
Sbjct: 1   MNNLFETPIEYLKGVGPQRGDLLRKEL-----GVYKYGDLINFYPNRYLDRTKYYKISEL 55

Query: 65  SEER-IVTITGYISQHSSFQL-QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
                 V I G +    S +  + +        D TG++ L++F +  + +K        
Sbjct: 56  QNSSAEVQIIGKVIHIKSVEFAKGKSRLVATFIDDTGQMELVWF-QGQKWVKESLKLNVV 114

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPT-----GLSVDLFKKIIV 176
             + GK     N   M HP     +  + +  L ++ VY         G+S  +  K++ 
Sbjct: 115 YVIFGKTTSFNNTFNMAHPEMELLSEHEQSIRLAMQPVYPSTEKLTNRGISNKVVNKMMQ 174

Query: 177 EALSRLPVL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           +  S    L  E +   L+++    S  EA   IH P+ A   E  + A+ RL ++EL  
Sbjct: 175 QLFSETHTLFSETLPIYLIEELKLISKKEALINIHFPKNA---EALAKAQFRLKFEELFF 231

Query: 236 GQIALLLMRKQFKKEIG-IPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            Q+ L+      K +I   P +  G    +    ++PF+ T +Q+  +K+I  DM    +
Sbjct: 232 IQLQLITKNLIRKHKIKGFPFDKVGNYFTEFFNNHLPFNLTNAQKRVLKEIRNDMGNPAQ 291

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA ++M  A++ G QA +MAP  ILA QH+  + + ++   I ++
Sbjct: 292 MNRLLQGDVGSGKTIVAFMSMLLALDNGFQACLMAPTEILANQHFIGLLELSKPLNINIK 351

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           I+TG+     R+   E + +G  HI+IGTHAL +D +Q+  L L I+DEQHRFGV+QR K
Sbjct: 352 ILTGSSNTKARKIIHEELENGSLHILIGTHALLEDKVQFKNLGLAIIDEQHRFGVEQRSK 411

Query: 414 LTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L +K T  PHVL+MTATPIPRTL ++  GD+DIS I E P GRKPIKTV    +   +V 
Sbjct: 412 LWKKNTIPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPIKTVHRFDSNRLKVW 471

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDID 529
             ++  + +G++ Y + P I+E ++ +F+ +++ + SL   F     +I+I+HG+M   D
Sbjct: 472 HFIREEIEKGRQIYIVYPLIQESEKMDFKDLMDGYESLSRDFPLPKYAISILHGKMKPAD 531

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE+ M  F +G   +++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG + 
Sbjct: 532 KEAEMKRFSDGKTNIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGADQ 591

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S CIL+    + ++S TR+  +  T DGF IAE DLK R  G+I+G +QSG+    IA  
Sbjct: 592 SYCILMTSHKIGEDSKTRMETMVATNDGFEIAEVDLKLRGPGDIMGKQQSGVLNLQIADL 651

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR-ILLYLYQYNEAFQFIR 698
                +L +AR  A  +L  D  +     Q++R + + + +    + +I 
Sbjct: 652 VRDKDILLLARNYALKLLKDDAPMEKPEHQTLRKVFIEISKKKNIWNYIS 701


>gi|16273626|ref|NP_439884.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae Rd KW20]
 gi|260580699|ref|ZP_05848526.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae RdAW]
 gi|1172894|sp|P43809|RECG_HAEIN RecName: Full=ATP-dependent DNA helicase recG
 gi|1574599|gb|AAC23387.1| ATP-dependent DNA helicase (recG) [Haemophilus influenzae Rd KW20]
 gi|260092761|gb|EEW76697.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae RdAW]
          Length = 693

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 254/688 (36%), Positives = 390/688 (56%), Gaps = 26/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLLF+ P  + DR     
Sbjct: 1   MSLELLDAV--PLTSLSGVGAAISNKLAKI------GIHNLQDLLFHLPIRYEDRTRITL 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +  E+  TI G I Q       +R    + L+DGT +I L FF     M +N F  G
Sbjct: 53  IANLRPEQYFTIEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++K+ ++   + HP Y  +  N+  V    +  +YS   GL  +  +K+  +A
Sbjct: 111 VRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E +  +    +   S+ EA  ++H P      E       PA++RL ++E
Sbjct: 171 LALLDKVQIAEILPNEFNPHQ--YSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +  
Sbjct: 229 LLAHNLAMQKVRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFKPFGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R 
Sbjct: 409 MLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
            E++       ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM 
Sbjct: 469 AEIVMRVKNACVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +
Sbjct: 589 CTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
           A       ++   +  AK ++ + PD+ 
Sbjct: 649 ANLMRDRKMIPTVQHYAKSLIQKYPDVA 676


>gi|326201982|ref|ZP_08191852.1| ATP-dependent DNA helicase RecG [Clostridium papyrosolvens DSM
           2782]
 gi|325987777|gb|EGD48603.1| ATP-dependent DNA helicase RecG [Clostridium papyrosolvens DSM
           2782]
          Length = 690

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 234/696 (33%), Positives = 382/696 (54%), Gaps = 22/696 (3%)

Query: 1   MRPSFLNPL-FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP 59
           M+   +N L    +   +GVG+       K+            D+L Y+P  + DR    
Sbjct: 1   MKKITINDLKQKSIRYIKGVGESRESLFKKL------EIHNLFDVLTYYPREYEDRSSIK 54

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVF 117
            I+++      +  G I  + S    KR     ++ + D TG+IT ++F +    +KN  
Sbjct: 55  NIADLQNGVPCSFEGTIVSNVSITRPKRGMTVSRVSIEDSTGKITAIWFNQ--PYVKNSL 112

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIV 176
             G      GK ++  N++ +V+P +   +S+D+   L I  VYS    L  ++ + ++ 
Sbjct: 113 KLGDNYIFFGKAERKLNKLQIVNPVFEKASSKDMKKSLKILPVYSSTKDLGQNIIRSVVY 172

Query: 177 EALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           EA+  +    L + I   +  K   P    +   IH P   +D E     R RL ++EL 
Sbjct: 173 EAIKIINDIELEDMIPLSVRDKFKLPDRTYSIKQIHFPASVRDIESA---RFRLVFEELF 229

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
             Q+ LL  +                  +  +++ PF  T +Q+    ++ +DM     M
Sbjct: 230 MLQLGLLSYKSLATDTRVGIKYTHIDQMEDFIKSFPFELTNAQKKVFVEVEKDMESSRVM 289

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++QGDVGSGKT++A++A+  AV+ G Q  +M P  ILA+QH++ IK       + VE+
Sbjct: 290 NRLVQGDVGSGKTMIAVLALFKAVKCGYQGALMVPTEILAEQHFKSIKSLFDCFGVSVEL 349

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           ++ ++ +  ++  +E +  G+  ++IGTHAL +D +++ +L LVI DEQHRFGV+QR  L
Sbjct: 350 LSSSLTKKQKQLIVEELKEGKTDVVIGTHALIEDYVEFKQLGLVITDEQHRFGVRQRTIL 409

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
           T+K   P VL+MTATPIPRTL L   GD+DIS I E P GRKPIKT  +     + +   
Sbjct: 410 TEKGQNPDVLVMTATPIPRTLALILYGDLDISIIDELPPGRKPIKTYSVNEAMRERINNF 469

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKES 532
           ++  ++EG++ Y +CP +EE +E   +S V     + +      ++ IIHG+M   +KE+
Sbjct: 470 VREKVNEGRQVYIVCPLVEESEEIEAKSAVVTAEDISKSVFRDLNVGIIHGKMKSSEKEA 529

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +M SF +G   +L++TT+IEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG+E S C
Sbjct: 530 IMKSFVSGEISILVSTTIIEVGVNVPNATVMIIENAERFGLAQLHQLRGRVGRGDEQSFC 589

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           IL ++   SK +  R+ ++ ++ DGF+I+E+DL+ R  GE  G +Q G+P+  IA     
Sbjct: 590 IL-FNQSNSKVAKERMKIMTHSNDGFVISEKDLEIRGPGEFFGTRQHGLPELKIANLYKD 648

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLY 688
             +L+ A++ A  I+  DP L  ++   ++  L  Y
Sbjct: 649 MEILKQAQESAMEIIQADPGL--MKHNELKKHLAAY 682


>gi|170078462|ref|YP_001735100.1| ATP-dependent DNA helicase RecG [Synechococcus sp. PCC 7002]
 gi|169886131|gb|ACA99844.1| ATP-dependent DNA helicase [Synechococcus sp. PCC 7002]
          Length = 822

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 248/688 (36%), Positives = 391/688 (56%), Gaps = 29/688 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    G+G K S  L+K+            D LFY+P   ID   + KI+++    
Sbjct: 125 LDQPLMYLPGIGPKRSNQLAKL------GLETVRDALFYYPRQHIDYAKQVKITDLEAGE 178

Query: 69  IVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEM--------LKNVF 117
            VT+ G++ + + F   K +   I    L D +G I L  FY  T          +K  +
Sbjct: 179 TVTLVGHVVRCNIFTSPKNQKLSIFELWLRDSSGRIKLSRFYAGTRYSNRGWQEKMKRQY 238

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE-----AVYSLPTGLSVDLFK 172
            +G  I  +G +KK K  + + +P     +S   +   ++      VY L  G+  DL +
Sbjct: 239 PQGVAIAASGLVKKNKYGLTLDNPEIEVLDSSGADIKSLKIGRVLPVYPLTEGVPADLIR 298

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           K+++ +L  +  L +       ++     + EA   IH P  A+  +     R+RL +DE
Sbjct: 299 KVVINSLPAIAQLKDAFPTAFREQHGLMKLQEAIANIHFPENAEILQQA---RQRLVFDE 355

Query: 233 LLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
               Q+  L  R+Q K          +G++ ++  + +PF  T +Q+  I +IL D++Q 
Sbjct: 356 FFYLQLGFLQRRQQEKASQKSAVFIPQGELIKRFEKLLPFQLTNAQQRVITEILADLAQS 415

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVG+GKT+VA+ A+ AA+++G QA +MAP  +LA+QHY  +  +     + 
Sbjct: 416 TPMNRLVQGDVGAGKTVVAVFAILAAIQSGYQAALMAPTEVLAEQHYRKLVGWFNLLHLP 475

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++TG+     RR+   ++  G+  +++GTHAL +D +Q+  L LV++DEQHRFGVQQR
Sbjct: 476 VELLTGSTKTKKRREIHSQLQTGELKVLVGTHALIEDPVQFQNLGLVVIDEQHRFGVQQR 535

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            +L  K  APHVL MTATPIPR+L LT  GD+D+S+I E P GR+PI T +I      + 
Sbjct: 536 GRLLAKGKAPHVLTMTATPIPRSLALTLHGDLDVSQIDELPPGRQPIDTRVIKGGDRHKA 595

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDID 529
            E +K  +++G++AY I P IEE ++   ++ V     L E    S  + ++HGRM   +
Sbjct: 596 YELIKREVAQGRQAYVIFPLIEESEKLEAKAAVAEHQRLSEQVFKSFNVGLLHGRMKSEE 655

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K++ +++F++    ++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG+  
Sbjct: 656 KDAALNAFRDNQNHIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGQHQ 715

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+ +   + +S TRL VL+ + DGF I+E DL+ R  GE+LG KQSG+P F +A  
Sbjct: 716 SHCLLVTNSK-NPDSQTRLRVLEQSTDGFFISEMDLRLRGPGEVLGTKQSGLPDFALASL 774

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVR 677
                +L IAR+ A+ +L  DP L    
Sbjct: 775 TEDQEVLLIARQAAEQLLKIDPLLEQYP 802


>gi|229513632|ref|ZP_04403096.1| ATP-dependent DNA helicase RecG [Vibrio cholerae TMA 21]
 gi|254285900|ref|ZP_04960862.1| ATP-dependent DNA helicase RecG [Vibrio cholerae AM-19226]
 gi|150424082|gb|EDN16021.1| ATP-dependent DNA helicase RecG [Vibrio cholerae AM-19226]
 gi|229349509|gb|EEO14465.1| ATP-dependent DNA helicase RecG [Vibrio cholerae TMA 21]
          Length = 692

 Score =  581 bits (1499), Expect = e-164,   Method: Composition-based stats.
 Identities = 261/675 (38%), Positives = 389/675 (57%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFFNF-TAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + ++HP Y F          P +  VY    GL     + +  +AL+ L    + E
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDQQ--MTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAI 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+ + + M+R++QGDVG
Sbjct: 239 RSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 RETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++   
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+H
Sbjct: 539 KNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 APLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLVP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI  + P 
Sbjct: 659 QVQRIARHIHERYPQ 673


>gi|260582089|ref|ZP_05849884.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae NT127]
 gi|260094979|gb|EEW78872.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae NT127]
          Length = 693

 Score =  581 bits (1499), Expect = e-164,   Method: Composition-based stats.
 Identities = 253/688 (36%), Positives = 390/688 (56%), Gaps = 26/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +   L++  GVG   S  L+KI            DLLF+ P  + DR     
Sbjct: 1   MSLELLDAV--SLTSLSGVGAAISNKLAKI------GIHNLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +  E+  TI G I Q       +R    + L+DGT +I L FF     M +N F  G
Sbjct: 53  IANLRPEQYFTIEG-IVQTCEVAFSRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++K+ ++   + HP Y  +  N+  V    +  +YS+  GL  +  +K+  +A
Sbjct: 111 VRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSITEGLKQNSLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E +  +    +   S+ EA  ++H P      E       PA++RL ++E
Sbjct: 171 LTLLDKVQIAEILPNEFNPHQ--YSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +  
Sbjct: 229 LLAHNLAMQKVRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R 
Sbjct: 409 MLRKKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
            E++       ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM 
Sbjct: 469 TEIVMRVKNACVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +
Sbjct: 589 STASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
           A       ++   +  AK ++ + PD+ 
Sbjct: 649 ANLMRDRKMIPTVQHYAKSLIQKYPDVA 676


>gi|297581546|ref|ZP_06943469.1| ATP-dependent DNA helicase RecG [Vibrio cholerae RC385]
 gi|297534384|gb|EFH73222.1| ATP-dependent DNA helicase RecG [Vibrio cholerae RC385]
          Length = 692

 Score =  581 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 260/675 (38%), Positives = 392/675 (58%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFFNF-TAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + ++HP Y F          P +  VY    GL     + +  +AL+ L    + E
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQLTLRNLTDQALALLDKSAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDQQ--MTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAI 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q ++++ +P+    ++ Q++L  +PF+PTK+Q+  + +I  D+ + + M+R++QGDVG
Sbjct: 239 RSQGQQDVALPLASVHQLKQQLLAQLPFTPTKAQQRVVAEIEADLEKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 RDTELARIASGEVKMVVGTHALFQEQVSFGHLALVIIDEQHRFGVHQRLELREKGAKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP ++ DE++ER++   
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDSKRDEIVERIRHAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  E    L       +I ++HGRM   +K++VM +F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPDLNIGLVHGRMKPAEKQAVMQAF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+H
Sbjct: 539 KNNQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL+VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 APLSKTAQKRLAVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLVP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI  + P 
Sbjct: 659 QVQRIARHIHERYPQ 673


>gi|89098692|ref|ZP_01171574.1| ATP-dependent DNA helicase RecG [Bacillus sp. NRRL B-14911]
 gi|89086654|gb|EAR65773.1| ATP-dependent DNA helicase RecG [Bacillus sp. NRRL B-14911]
          Length = 679

 Score =  581 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 232/683 (33%), Positives = 376/683 (55%), Gaps = 23/683 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+++ +G+G + +  L+      + N     DLL + P  + D      +SE+  E 
Sbjct: 2   LNEPVTSIKGIGAETAEALA------DMNIFTVGDLLEHFPFRYEDYR-LKDLSEVKHEE 54

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVT 126
            VT+ G I          R+  ++ +    G   I  +FF +    LK  F     +T+T
Sbjct: 55  RVTVEGKIHSEPLLTYYGRKRSRLTIRVLVGRYLIQAVFFNQ--PYLKKKFAINDSVTIT 112

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVL 185
           GK  + +  I         H  ++      E VY++   ++V   ++ I  A S+    +
Sbjct: 113 GKWDQHRQMISAS----EIHLGENAASKDFEPVYAVKGSITVKGIRRFIGMAFSQYADSI 168

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E + + LL++    +  +A   +H P   +D      AR R  Y+E L  Q+ +  +RK
Sbjct: 169 AETLPERLLEQYKLLNRKDALRAMHFPGGPEDL---KQARRRFVYEEFLYFQLKMQALRK 225

Query: 246 -QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            + ++  GI    + K  ++ + ++PF  T +Q+  + +IL DM    RM R+LQGDVGS
Sbjct: 226 FEREQSKGIVQTYDLKKLKEFIGSLPFPLTGAQKRVVNEILSDMKSPYRMNRLLQGDVGS 285

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA I + AA  AG Q  +M P  ILA+QH + +K+  +   +  E++T ++    R
Sbjct: 286 GKTVVAAIGLYAAATAGYQGALMVPTEILAEQHEKSLKELLEPQGLSCELLTSSVKGKKR 345

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           +  L R++ G+  ++IGTHAL Q  +++ +L  VI DEQHRFGV+QR  L +K  +P VL
Sbjct: 346 KDILARLSEGEIDVLIGTHALIQQEVEFKRLGFVITDEQHRFGVEQRRVLREKGESPDVL 405

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            MTATPIPRTL +T  G++D+S I E PAGRK I+T       +D +++ ++  LS+G++
Sbjct: 406 FMTATPIPRTLAITVFGEMDVSIIDEMPAGRKTIETYWAKQEMLDRILQFMEKELSKGRQ 465

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
           AY ICP IEE  + + ++ ++  ++L  ++     + ++HGR+   +K+ VM  F     
Sbjct: 466 AYVICPLIEESDKLDVQNAIDVHSNLTFYYQDRYKVGLMHGRLHPEEKDGVMKEFSRNEI 525

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L++TTV+EVG++V +A+I++I +AE FGL+QLHQLRGRVGRG E S CILL  P  S+
Sbjct: 526 QILVSTTVVEVGVNVPNATIMVIYDAERFGLSQLHQLRGRVGRGSEQSYCILLADPK-SE 584

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++  T DGF+++E+DL+ R  G+  G KQSGMP+F +A        LE AR D
Sbjct: 585 VGKERMKIMSETNDGFVLSEKDLELRGPGDFFGRKQSGMPEFKVADMVHDYRALETARND 644

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
           A  ++             +R  L
Sbjct: 645 ASKLIQSSIFWEGPEYGMLREYL 667


>gi|52080190|ref|YP_078981.1| ATP-dependent DNA helicase RecG [Bacillus licheniformis ATCC 14580]
 gi|52785567|ref|YP_091396.1| ATP-dependent DNA helicase RecG [Bacillus licheniformis ATCC 14580]
 gi|319646031|ref|ZP_08000261.1| RecG protein [Bacillus sp. BT1B_CT2]
 gi|52003401|gb|AAU23343.1| ATP-dependent DNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52348069|gb|AAU40703.1| RecG [Bacillus licheniformis ATCC 14580]
 gi|317391781|gb|EFV72578.1| RecG protein [Bacillus sp. BT1B_CT2]
          Length = 682

 Score =  581 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 241/683 (35%), Positives = 378/683 (55%), Gaps = 23/683 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +S  +GVG +    L+++           +DLL Y P  + D      + +++ + 
Sbjct: 5   LQLSISVIKGVGTETEKTLNEL------GIYTVLDLLNYFPYRYDDY-ELRDLEDVAHDE 57

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVT 126
            VT+ G +    S     ++  ++      G   IT + F R    LK     G  +TVT
Sbjct: 58  RVTVEGKVHSEPSLAYYGKKRSRLTFRLLVGNYLITAVCFNR--PYLKKKLAIGSIVTVT 115

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVL 185
           GK  K +  +++        N        IE VYS+   ++V   +K+I EA+ S LP  
Sbjct: 116 GKWDKHRQSVMVQ----ELKNGPHQGDQSIEPVYSVKENITVKTMRKLIQEAVRSHLPFA 171

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            + + + L       S  EA   +H P      E    AR R  Y+E L  Q+ +  +RK
Sbjct: 172 EDPLPEKLRTAYKLLSYQEAVKAMHKPESR---EALKHARRRFVYEEFLLFQLKMQALRK 228

Query: 246 -QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            + +   GI      +     ++++PF  T +Q  A+ DIL+DM+   +M R+LQGDVGS
Sbjct: 229 FEREASDGISHTFRLEDVNSFVKSLPFPLTNAQAKALDDILRDMASGYKMNRLLQGDVGS 288

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT VA IA+ A++ +G Q  +M P  ILA+QH + +    +   + V ++T ++    R
Sbjct: 289 GKTAVAAIALYASLLSGFQGAMMVPTEILAEQHADSLVSLFEQHDVNVALLTSSVKGKRR 348

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R+ LER+  G+  I++GTHAL QD + + +L LVI DEQHRFGV+QR KL  K   P VL
Sbjct: 349 RELLERLKEGEIDILVGTHALIQDDVHFKQLGLVITDEQHRFGVEQRKKLRSKGKDPDVL 408

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            MTATPIPRTL +T  G++D+S I E PAGRK I+T  +  + ++ ++  +   L +G++
Sbjct: 409 FMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLERILAFIDKELKKGRQ 468

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
           AY ICP IEE  + + ++ ++  + L   F     I ++HG++S+ +KE VM  F    C
Sbjct: 469 AYVICPLIEESDKLDVQNAIDVHSMLTHAFRGRWQIGLMHGKLSNDEKEQVMRQFSKNEC 528

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L++TTV+EVG++V +A++++I +A+ FGL+QLHQLRGRVGRG+  S CIL+  P  S+
Sbjct: 529 QILVSTTVVEVGVNVPNATVMLIYDADRFGLSQLHQLRGRVGRGDHQSYCILMADPK-SE 587

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+S++  T DGF ++E+DL+ R  G+  G KQSGMP+F +A        LE AR+D
Sbjct: 588 TGKERMSIMSETTDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRALETARRD 647

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
           A  +++     T    +S+R  L
Sbjct: 648 AAELVSSKAFWTDAEYKSLREHL 670


>gi|153802204|ref|ZP_01956790.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MZO-3]
 gi|153825548|ref|ZP_01978215.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MZO-2]
 gi|124122278|gb|EAY41021.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MZO-3]
 gi|149740833|gb|EDM54924.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MZO-2]
          Length = 692

 Score =  581 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 261/675 (38%), Positives = 389/675 (57%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFFNF-TAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + ++HP Y F          P +  VY    GL     + +  +AL+ L    + E
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDQQ--MTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAI 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+ + + M+R++QGDVG
Sbjct: 239 RSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 RETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++   
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+H
Sbjct: 539 KNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 APLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLVP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI  + P 
Sbjct: 659 QVQRIARHIHERYPQ 673


>gi|220929301|ref|YP_002506210.1| ATP-dependent DNA helicase RecG [Clostridium cellulolyticum H10]
 gi|219999629|gb|ACL76230.1| ATP-dependent DNA helicase RecG [Clostridium cellulolyticum H10]
          Length = 689

 Score =  581 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 235/684 (34%), Positives = 381/684 (55%), Gaps = 22/684 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            +   +GVG+       K+            DL+ Y+P  + DR     I+++      +
Sbjct: 13  SIRYIKGVGELRESLFKKL------GINNIFDLITYYPRDYEDRSSIKNIADLQNGVPCS 66

Query: 72  ITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
             G I  + S    ++     K+ + D TG+IT ++F +    +KN    G      GK 
Sbjct: 67  FEGTIVSNVSVTRPRKGLTLSKVSIEDSTGKITAIWFNQ--PYVKNSLAIGENYIFFGKA 124

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
            +  N++ +V+P +   + +D+   L I  VYS    L  +  + ++ EA+  +    L 
Sbjct: 125 DRKLNKLQIVNPVFEKSSLKDMKKSLKILPVYSSTKDLGQNTIRTVVNEAIKGIEDFELE 184

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + I   + +  +      A   IH P  A+D E     R RLA++EL   Q+  LL  K 
Sbjct: 185 DMIPDAVREIHNLADKTYAIKQIHFPASAQDMERA---RFRLAFEELFMLQLG-LLSYKS 240

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
                 + I       +  ++++PF  T +Q+    ++ +DM   + M R++QGDVGSGK
Sbjct: 241 LATCTRVGIKYTHIEMESFVKSLPFQLTNAQKKVFMEVEKDMESSHIMNRLVQGDVGSGK 300

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T++A++A+  AV+ G Q  +M P  ILA+QHY+ I+    +  I V++++ ++ +  ++ 
Sbjct: 301 TVIAVLALFKAVKCGYQGALMVPTEILAEQHYKSIRSLFDSFGISVQLLSSSLTKKQKQL 360

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            +E +  G+  ++IGTHAL +D IQ+ +L LVI DEQHRFGV+QR  LT+K   P VL+M
Sbjct: 361 IVEELKEGKTDVVIGTHALIEDYIQFKQLGLVITDEQHRFGVRQRTILTEKGQNPDVLVM 420

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L   GD+DIS I E P GRKPIKT  +  +  + + + ++  + EG++ Y
Sbjct: 421 TATPIPRTLALILYGDLDISIIDELPPGRKPIKTYSVNESMRERINKFVRDKVKEGRQIY 480

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP +EE +E   +S V   + + +   S  ++ IIHG+M   +KE +M  F +G   +
Sbjct: 481 IVCPLVEESEEIEAKSAVVTADDISKSVFSDLNVGIIHGKMKSSEKEDIMKKFVSGEINI 540

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TT+IEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG+E S CIL ++   SK S
Sbjct: 541 LVSTTIIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGDEQSFCIL-FNQSNSKVS 599

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+  +  + DGF+I+E+DL+ R  GE  G +Q G+P+  IA       +L++A+  A 
Sbjct: 600 RERMKTMTQSTDGFVISEKDLEIRGPGEFFGTRQHGLPELKIANLYKDMDILKLAQNSAI 659

Query: 665 HILTQDPDLTSVRGQSIRILLYLY 688
            I+  DP L  +  + ++  L +Y
Sbjct: 660 EIIEADPGL--LEHEVLKKYLSMY 681


>gi|332881158|ref|ZP_08448818.1| ATP-dependent DNA helicase RecG [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332680907|gb|EGJ53844.1| ATP-dependent DNA helicase RecG [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 705

 Score =  581 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 253/706 (35%), Positives = 378/706 (53%), Gaps = 29/706 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L   +   RGVGK+ +  L   +        ++ DLL   P+ +IDR    KI+E+  
Sbjct: 6   NLLHTSVEYLRGVGKQRAELLKSEL-----GIEQYQDLLNLFPNRYIDRTKFYKINELQN 60

Query: 67  ER-IVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
               V + G I    +     QK+        D TG++ L++F +  + + +        
Sbjct: 61  NNAEVQLIGKIVNLRTVASAQQKQARLVATFVDETGQMELVWF-KGHKWISDSLKLNESY 119

Query: 124 TVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVE 177
            + GK+        M HP   +  +        I+ VY         G+S  + +++I  
Sbjct: 120 VIFGKVNHFGGIFSMPHPEMDLLVDFNKAGHSSIQPVYPSTEKLTKRGVSNRVMRQLIHT 179

Query: 178 ALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
               +     E +   + +  +  S  EA   IH P    D    + A  RL ++EL   
Sbjct: 180 VFEEVGYQFMENLPASIRKTLNLISKQEAMRNIHFP---ADQSMLTKATVRLKFEELFYI 236

Query: 237 QIALLLMRK---QFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKN 292
           Q+   L+RK   Q +K  G+P    G         ++PF  T +Q+  +K+I  D+    
Sbjct: 237 QL--QLVRKNLLQKQKFQGMPFRKVGDAFMNFYNHHLPFPLTNAQKRVLKEIRADLGSNA 294

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +M R+LQGDVGSGKT+VAL+ M  AV+ G QA +MAP  ILA QHY+ I    QNT I V
Sbjct: 295 QMNRLLQGDVGSGKTIVALMTMLLAVDNGFQACLMAPTEILATQHYQSISALLQNTGISV 354

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+     RR   E++  G   I+IGTHAL +D +Q+  L L I+DEQHRFGV+QR 
Sbjct: 355 ALLTGSSKTKERRILDEQLQEGSLSILIGTHALLEDKVQFANLGLAIIDEQHRFGVEQRA 414

Query: 413 KLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           KL +K T  PH+L+MTATPIPRTL ++  GD+D+S I E P GRKPIKT+    NR  E 
Sbjct: 415 KLWRKNTLPPHILVMTATPIPRTLAMSVYGDLDVSVIDELPPGRKPIKTIHHFENRRAET 474

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDI 528
            E +K  + +G++AY + P IEE +  +F+++ E +  +   F      ++I+HG++   
Sbjct: 475 YEFVKKEIDKGRQAYVVYPLIEESEALDFKNLTEGYEYISASFPLPKYKVSIVHGKLKPA 534

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +K+  M+ F     ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E
Sbjct: 535 EKDVEMERFVRNETQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGSE 594

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            S CILL    +S ++ TR+  +  T DGF IAE DLK R  G+++G +QSG+    IA 
Sbjct: 595 QSYCILLTGNKMSNDTRTRMETMVRTNDGFEIAEVDLKLRGPGDLMGTQQSGVLALKIAD 654

Query: 649 PELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
                 +L+ AR  A  +L  DPDL     Q +   L   Q ++  
Sbjct: 655 IVKDQEILKAARAYAIDLLKADPDLVQPEHQCVAYTLDQLQRHKNL 700


>gi|301170495|emb|CBW30102.1| ATP-dependent DNA helicase [Haemophilus influenzae 10810]
          Length = 693

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 253/688 (36%), Positives = 387/688 (56%), Gaps = 26/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLLF+ P  + DR     
Sbjct: 1   MSLELLDAV--PLTSISGVGAAISNKLAKI------GIQNLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +  E+  TI G I Q       +R    + L+DGT +I L FF     M +N F  G
Sbjct: 53  IANLRPEQYFTIEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQAG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++K+ ++   + HP Y  +  N+  V    +  +Y    GL  +  +K+  +A
Sbjct: 111 VRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTPIYPTTEGLKQNSLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E +  +    +   S+ EA  ++H P      E       PA+ RL ++E
Sbjct: 171 LALLDKVQIAEILPNEFNPHQ--YSLKEALRLLHRPPPDISLEMLEQGKHPAQLRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++   +P++ +  +  + L  +PF PT +Q+  + DI QD+ +  
Sbjct: 229 LLAHNLAMQKVRLGTQQFSALPLHYQTDLKLRFLATLPFQPTNAQKRVVSDIEQDLIKDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKSRQAELEKIKTGTVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R 
Sbjct: 409 MLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
            E++       ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM 
Sbjct: 469 AEIVMRVKNACVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  I
Sbjct: 589 STASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRI 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
           A       ++   +  AK ++ + PD+ 
Sbjct: 649 ANLMRDRKMIPTVQHYAKSLIQKYPDVA 676


>gi|159028665|emb|CAO88136.1| recG [Microcystis aeruginosa PCC 7806]
          Length = 822

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 250/689 (36%), Positives = 401/689 (58%), Gaps = 29/689 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL     VG++ +  L ++      N  +  DLL+Y+P   +D   +  I+ ++E  
Sbjct: 125 LEQPLKYLAEVGERKASLLERL------NLHKVEDLLYYYPRDHVDYSRQVNIANLTEGE 178

Query: 69  IVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEM--------LKNVF 117
            VT+ G + + + F   K     I   LL D TG+I L  FY  T           K ++
Sbjct: 179 TVTLVGNVKRCNCFNSPKNTKLAIFELLLQDRTGQIKLNRFYAGTRYNNRAWQEGQKKLY 238

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFK 172
             G  + V+G +K  K  + + +P +   +S     + +    I  VY L  G+  DL +
Sbjct: 239 PVGSVVAVSGLVKAGKYGLTLENPEFELLDSSGGSIESLKIGRILPVYPLTDGVPADLIR 298

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           K +V A   +  + + +   L ++     +  A   IH P  +   +  S AR RL +DE
Sbjct: 299 KAVVTAFGAVEAIKDPLPFGLKKQYGLIDLKTAITNIHFPNNS---DILSQARRRLVFDE 355

Query: 233 LLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
               Q+  L  R+Q+++       + +G++  +  + IPF  T +Q+  I++IL+D+   
Sbjct: 356 FFFLQLGFLRRRQQYRQTQKSAIFSAKGQLIDQFNQIIPFQLTNAQKRVIEEILEDLDSS 415

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVGSGKT+V + A+ AA+++G QA +MAP  +LA+QHY  +  +     + 
Sbjct: 416 TPMNRLVQGDVGSGKTIVGVYAILAALQSGYQAALMAPTEVLAEQHYRKLVSWFNLLHLP 475

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++TG+   A RR+   ++  G+  +++GTHAL QD++ + KL LV++DEQHRFGVQQR
Sbjct: 476 VELLTGSTKTAKRREIHAQLETGELPLLVGTHALIQDAVNFRKLGLVVIDEQHRFGVQQR 535

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            +L  K  +PHVL MTATPIPRTL LT  GD+D+S+I E P GR+PI+T  +  N+    
Sbjct: 536 ARLLSKGESPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQPIQTTALNGNQRRAA 595

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDID 529
            + ++  +++G++AY I P IEE ++ + R+ VE + +L E      +I ++HGRMS  +
Sbjct: 596 YDLIRREIAQGRQAYVIFPLIEESEKLDVRAAVEEYQNLSEKIFPNFNIGLLHGRMSSAE 655

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE ++ +F++   +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   
Sbjct: 656 KEEILTAFRDNILQIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGSHQ 715

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+LL     S NS  RL+VL+ ++DGF I+E D++ R  GE+LG +QSG+P F +A  
Sbjct: 716 SYCLLLSGSN-SANSRQRLTVLEQSQDGFFISEMDMRFRGPGEVLGQRQSGLPDFALASL 774

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRG 678
                +L +AR  A+ I+  DP L ++  
Sbjct: 775 VEDQEVLVLARDAAEKIMLDDPHLITLPN 803


>gi|253987679|ref|YP_003039035.1| ATP-dependent DNA helicase RecG [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638586|emb|CAR67206.1| atp-dependent dna helicase recg (ec 3.6.1.-) [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779129|emb|CAQ82289.1| ATP-dependent DNA helicase RecG [Photorhabdus asymbiotica]
          Length = 706

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 256/707 (36%), Positives = 395/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL++  GVG   +  L+K+            DLL + P  + D+     
Sbjct: 14  MKGQLLDAI--PLTSLHGVGASQAAKLAKM------GLINLQDLLLHFPLRYEDQTRLYT 65

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+TG I  H++    +RR     ++DGTG +TL FF     M KN   +G
Sbjct: 66  INDLLPGISATVTGEIL-HTNIIFGRRRMMICQISDGTGVLTLRFFNFSAAM-KNNLAKG 123

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++   G+I++      ++HP Y              +  +Y    G+     +K+I +A
Sbjct: 124 KQVVAYGEIRRGSQGAEIIHPEYKIQTYAGNVRLQETLTPIYPTTEGIRQATLRKLIEQA 183

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L  L    + E + ++L   +S  S+ +A + +H P       D E    PA  RL  +E
Sbjct: 184 LQLLDTCAINELLPEEL--SRSMISLPQALHTLHRPTPDIVLADLETGKHPAHRRLILEE 241

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L ++   ++     +  E K+ Q+ L  +PF+PT +Q+  + +I QD+++  
Sbjct: 242 LLAHHLSMLEVKVGAQRYHAQSLPTENKLKQQFLNRLPFTPTNAQQRVVAEIEQDLAKDI 301

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   I +
Sbjct: 302 PMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLEPLDIQI 361

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+K  E IA GQ  +I+GTHA+FQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 362 GWLAGKQKGKARQKQQEAIASGQVAMIVGTHAMFQEQVKFSGLALVIIDEQHRFGVHQRL 421

Query: 413 KL----TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     ++   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 422 ALWEKGREQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRR 481

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +EVI+R+K   L E ++AYW+C  IE+      ++       L        + ++HGRM 
Sbjct: 482 EEVIKRIKNACLDENRQAYWVCTLIEDSDVLEAQAAQVTSEELTLALPELKVGLVHGRMK 541

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K +VM++FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 542 AAEKLAVMEAFKCGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 601

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PLS  +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 602 AIASHCVLLYKTPLSSTARIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 661

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A       +L   ++ A+HI  + P+    R    R L     Y+ A
Sbjct: 662 ADLLRDQGMLPEVQRIARHIHQRYPE--HARALIERWLPERTHYSNA 706


>gi|332139566|ref|YP_004425304.1| ATP-dependent DNA helicase RecG [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549588|gb|AEA96306.1| ATP-dependent DNA helicase RecG [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 690

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 256/696 (36%), Positives = 389/696 (55%), Gaps = 25/696 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            P++  +GVG K +  L+KI            D+LF+ P  + DR     ++E      V
Sbjct: 7   TPITALKGVGAKVAEKLNKI------GLFTLQDILFHLPHRYEDRTRIYSVAECRPFTHV 60

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           ++ G +   +  Q  K+R   + L+DGTG ITL FF+    + +++   G  +   G+++
Sbjct: 61  SVQGEVMG-ADIQYGKKRMLVVKLSDGTGTITLRFFHFGA-VQRSIMTPGNTVRCFGEVR 118

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
             K  I M+HP +   +         +  VY    G+     + +  +AL  L    L +
Sbjct: 119 TGKWGIEMMHPEFKLVDEDAPPTEESLTPVYPTTDGVKQLTLRNLTDQALKLLDKGALAD 178

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            + + +   +   S+ EA +++H P    D     E   PA+ RL  +ELL+  +++L +
Sbjct: 179 LLPEGIYDNQ--ISLNEALHLVHRPPPDVDVHEMEEGLHPAQYRLILEELLSHHLSVLKV 236

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           RK    + GIPI+V   +  K+L  +PFSPT +Q   ++DI +DM     M+R++QGDVG
Sbjct: 237 RKLSDAQPGIPISVNQPLIDKMLAQLPFSPTGAQARVVEDIQKDMQHARPMMRLVQGDVG 296

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A  +A+ AG Q  +MAP  +LA+QH    + + +   I V  + G +    
Sbjct: 297 SGKTLVAALAALSAIGAGHQVALMAPTELLAEQHANNFRGWLEPLGIEVGWLAGKLKGKA 356

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT----QKAT 419
           R + L R+  G   +++GTHA+FQ+S+ Y +L LVIVDEQHRFGV QRL L     Q+  
Sbjct: 357 RNEVLARLEAGDIQMLVGTHAIFQESVTYQQLALVIVDEQHRFGVHQRLALRDKGEQQGR 416

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T+  D+D S I E P GR P++TV++P  R  +VIER++   
Sbjct: 417 YPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVQTVVLPDTRRADVIERVRQAC 476

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++AYW+C  I+E +    ++  +   +L        + ++HGR+   +K  VM  F
Sbjct: 477 KDNGRQAYWVCTLIDESEVLECQAAEDAAVTLRTALPDLQVGLVHGRLKPAEKAQVMADF 536

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+G   LL+ATTVIEVG+DV +ASI+IIEN E  GLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 537 KDGKLDLLVATTVIEVGVDVPNASIMIIENPERLGLAQLHQLRGRVGRGAVESQCVLMYQ 596

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF IA+ DL+ R  GE +G KQ+GM +  IA      +L+ 
Sbjct: 597 SPLSKTATQRLGVLRESNDGFYIAQRDLEIRGPGEFMGTKQTGMAELKIADLVRDAALIP 656

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             ++ A  +  + P  +  +    R + +  QY  A
Sbjct: 657 KVQEIAYTLWDKYP--SHAQAIINRWIGHKEQYGHA 690


>gi|149370699|ref|ZP_01890388.1| ATP-dependent DNA helicase [unidentified eubacterium SCB49]
 gi|149356250|gb|EDM44807.1| ATP-dependent DNA helicase [unidentified eubacterium SCB49]
          Length = 701

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 246/707 (34%), Positives = 380/707 (53%), Gaps = 28/707 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS-EE 67
           L  P+   +GVG   +  L   +         F DLL   P+ ++DR    KI E+    
Sbjct: 6   LQTPIEYLKGVGPNRANLLRTEL-----GIHTFQDLLNLFPNRYLDRTKFYKIQELQRNN 60

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V I G I+     + ++ +       D TG + L++F R  + +K+     +   + G
Sbjct: 61  ADVQIIGKITHIKMVEQKRGKRLVATFRDETGVMELIWF-RGQKWIKDNLKINQPYVIFG 119

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPT-----GLSVDLFKKIIVEA-LS 180
           K K       M HP               ++ +Y         G++  +  K++ +  L 
Sbjct: 120 KTKWFNGSFSMPHPELELVKEHKNKLRSSMQPIYPSTEKLTNSGITNKVINKLMEQVFLD 179

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
                 E + K ++ +    S +EA   IH P      E  + A  RL ++EL   Q+  
Sbjct: 180 AKNAFTETLSKPIINELKLLSKSEAIFNIHFPENG---ERLARAEYRLKFEELFYIQL-- 234

Query: 241 LLMRKQFKKEIGI---PINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            L+RK    +  I   P  V G   +     ++PF  T +Q+  +K+I QD+    +M R
Sbjct: 235 QLIRKNLIHKSKIKGYPFPVVGDNFKNFYNHHLPFQLTGAQKRVVKEIRQDLGSNAQMNR 294

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VAL++M  A++ G QA +MAP  IL+ QHY  + +  +  +I + ++T
Sbjct: 295 LLQGDVGSGKTIVALLSMLIALDNGFQACLMAPTAILSVQHYNGLVELCKGLEISISLLT 354

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+   + R+   E + +G  +I+IGTHAL +D +++  L L I+DEQHRFGV QR KL  
Sbjct: 355 GSSTTSQRKVIHENLENGSLNILIGTHALLEDKVKFKNLGLAIIDEQHRFGVAQRSKLWH 414

Query: 417 KAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           K    PHVL+MTATPIPRTL ++  GD+DIS I E P GRK IKTV    +   +V   +
Sbjct: 415 KNELPPHVLVMTATPIPRTLAMSVYGDLDISIIDELPPGRKEIKTVHRFDSNRLKVFRFI 474

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKES 532
           +  ++ G++ Y + P I+E +  +++ +++ + S+   F      I+I+HG+M   DKE 
Sbjct: 475 RDEIALGRQVYIVYPLIQESEALDYKDLMDGYESIVRDFPQPKYQISIVHGQMKPADKEF 534

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M+ F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E S  
Sbjct: 535 EMNRFLKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGAEQSYT 594

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           IL+    LS ++ TRL+ + +T DGF IAE DLK R  G+I+G +QSG+    IA     
Sbjct: 595 ILMTSHKLSADAKTRLATMTSTSDGFEIAEVDLKLRGPGDIMGTQQSGVLNLRIADIVKD 654

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIR-ILLYLYQYNEAFQFIR 698
             +L+IAR  A  +L  DP LT+    +I+     L +Y   + +I 
Sbjct: 655 SEILKIARSYAFQVLKADPGLTNTENLNIKNTFAQLVKYKNIWNYIS 701


>gi|146309754|ref|YP_001174828.1| ATP-dependent DNA helicase RecG [Enterobacter sp. 638]
 gi|145316630|gb|ABP58777.1| ATP-dependent DNA helicase RecG [Enterobacter sp. 638]
          Length = 693

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 255/689 (37%), Positives = 374/689 (54%), Gaps = 26/689 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL++  GVG   S  L+KI            DLL + P  + DR     
Sbjct: 1   MKGRLLDAI--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTQLYA 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++      T+ G I  + +     RR     ++DG+G +TL FF     M KN    G
Sbjct: 53  IGDLLPGIYATVEGEIL-NCNVTFGGRRMMTCQISDGSGILTLRFFNFSAAM-KNGLAAG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKFGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGIKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P  +    D E    PA+ RL  +E
Sbjct: 171 LELLDTCAITELLPPELAQ--GMMSLPEAIRTLHRPPPSLQLSDLESGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++   +P+     +  K+L ++PF PT +Q     +I  D++Q  
Sbjct: 229 LLAHNLSMLALRAGAQRFHALPLTARDDLKDKLLASLPFKPTHAQARVTAEIEHDLAQDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + +     + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRSWFAPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R    E IA G   +I+GTHA+FQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARIAQQEAIASGLVQMIVGTHAIFQEQVKFKGLALVIIDEQHRFGVHQRL 408

Query: 413 KLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGLQQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
            ++I+R++     EG++AYW+C  IEE +    ++    +  L        I ++HGRM 
Sbjct: 469 SDIIDRVRNACTQEGRQAYWVCTLIEESELLEAQAAEVTWEDLKLALPELQIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DK+ VM  FK G   LLIATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG
Sbjct: 529 SADKQQVMQRFKQGELHLLIATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LL+  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +
Sbjct: 589 AVASHCVLLFKSPLSKTAQMRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTS 675
           A      +++   ++ A+HI  + P   +
Sbjct: 649 ADLLRDQAMIPEVQRLARHIHERYPQQAT 677


>gi|319776734|ref|YP_004139222.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047]
 gi|329123155|ref|ZP_08251725.1| DNA helicase RecG [Haemophilus aegyptius ATCC 11116]
 gi|317451325|emb|CBY87563.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047]
 gi|327471710|gb|EGF17152.1| DNA helicase RecG [Haemophilus aegyptius ATCC 11116]
          Length = 693

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 253/688 (36%), Positives = 388/688 (56%), Gaps = 26/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLLF+ P  + DR     
Sbjct: 1   MSLELLDAV--PLTSLSGVGAAISNKLAKI------GIHNLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +  E+  TI G I Q       +R    + L+DGT +I L FF     M +N F  G
Sbjct: 53  IANLRPEQYFTIEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++K+ +    + HP Y  +  N+  V    +  +YS   GL  +  +K+  +A
Sbjct: 111 VRVKAFGEVKRGRYMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E +  +    +   S+ EA  ++H P      E       PA++RL ++E
Sbjct: 171 LALLDKVQIAEILPNEFNPHQ--YSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++   +P++ +  + Q+ L  + F PT +Q+  + DI QD+ +  
Sbjct: 229 LLAHNLAMQKVRLGTQQFSALPLHYQTDLKQRFLATLLFQPTNAQKRVVSDIEQDLIKDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R 
Sbjct: 409 MLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
            E++       ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM 
Sbjct: 469 TEIVMRVKNACVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +
Sbjct: 589 STASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
           A       ++   +  AK ++ + PD+ 
Sbjct: 649 ANLMRDRKMIPTVQHYAKSLIQKYPDVA 676


>gi|121997758|ref|YP_001002545.1| ATP-dependent DNA helicase RecG [Halorhodospira halophila SL1]
 gi|121589163|gb|ABM61743.1| ATP-dependent DNA helicase RecG [Halorhodospira halophila SL1]
          Length = 691

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 263/672 (39%), Positives = 386/672 (57%), Gaps = 21/672 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L++  GVG + +  L+++            DLL + P  + DR     I  +     V I
Sbjct: 8   LTSLPGVGPRLAERLARL------GLHTVGDLLLHRPIRYEDRTRLRPIGGLQPGERVLI 61

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G + + S     +R+     L+DGTG++ L+FF+      +     G  +   G+++  
Sbjct: 62  EGRV-EWSEVARGRRKRLLCRLSDGTGQLDLVFFHFHPRQAER-LSRGVVLRCFGEVRAG 119

Query: 133 KNRIIMVHPHYIFHNSQDVNFP---LIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEW 188
              + M HP +      D + P    +  VY+   GL     +K++  ALS LP   PE 
Sbjct: 120 YGGLQMAHPEHQRVAPGDADGPGEEALTPVYASTDGLHQGQLRKLVDAALSLLPGAAPEC 179

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMR 244
           +         +PS+AEA   +H P    D E     T PA  R+A +ELLA  + L   R
Sbjct: 180 LPDAARVDPQWPSLAEALRTVHRPPPEADTETLLAGTHPAVRRVACEELLAHHLTLRRRR 239

Query: 245 KQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +  + E G P   +G+  AQ++L+++PF+ T +Q+    ++ +DM++   MLR+LQGDVG
Sbjct: 240 QALRSEAGAPPLDQGEALAQRLLQSLPFALTGAQQRVDGELAEDMARSMPMLRLLQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A A AV +G QA +MAP  +LA+QH   ++ + Q   + V  ++G  P A 
Sbjct: 300 SGKTVVAALACARAVGSGYQAALMAPTELLAEQHCRSLQGWFQPLGVEVAWLSGGAPAAE 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--TAP 421
           RR A +R+A G+A I +GTHALFQ+ +Q+ +L LV+VDEQHRFGV QRL L  K     P
Sbjct: 360 RRAARQRLAEGRAGIAVGTHALFQEEVQFRRLGLVVVDEQHRFGVHQRLALKDKGGGAEP 419

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L MTATPIPRTL +T+  D+D+S + E+P GR P+KTV++   R  EVI R++  L E
Sbjct: 420 HQLTMTATPIPRTLAMTAYADLDVSSLDERPPGRTPVKTVVVAERRRAEVIARIRAALDE 479

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKN 539
           G++AYW+C  IE   E   ++  +    L         +A++HGRMS  +KE  M +F  
Sbjct: 480 GRQAYWVCTLIEASDELEAQAAEDTAAELDRAVGDAHRVALVHGRMSPAEKERTMAAFAQ 539

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   LL+ATTVIEVG+DV +AS+++I+NAE  GLAQLHQLRGRVGRG   S+C+L+YH P
Sbjct: 540 GEVALLVATTVIEVGVDVPNASLMVIDNAERLGLAQLHQLRGRVGRGRAASTCVLMYHGP 599

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS+++  RL+VL+ T+DGF IA  DL  R  GE+LG +Q+G     +A       LLE  
Sbjct: 600 LSESARQRLAVLRETDDGFAIARRDLDIRGPGELLGTRQTGALSLRVADLRRDADLLEAV 659

Query: 660 RKDAKHILTQDP 671
           ++    +L Q P
Sbjct: 660 QQVGAELLEQAP 671


>gi|319898189|ref|YP_004136386.1| ATP-dependent DNA helicase [Haemophilus influenzae F3031]
 gi|317433695|emb|CBY82083.1| ATP-dependent DNA helicase [Haemophilus influenzae F3031]
          Length = 693

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 253/688 (36%), Positives = 388/688 (56%), Gaps = 26/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLLF+ P  + DR     
Sbjct: 1   MSLELLDAV--PLTSLSGVGAAISNKLAKI------GIHNLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +  E+  TI G I Q       +R    + L+DGT +I L FF     M +N F  G
Sbjct: 53  IANLRPEQYFTIEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++K+ +    + HP Y  +  N+  V    +  +YS   GL  +  +K+  +A
Sbjct: 111 VRVKAFGEVKRGRYMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E +  +    +   S+ EA  ++H P      E       PA++RL ++E
Sbjct: 171 LALLDKVQIAEILPNEFNPHQ--YSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++   +P++ +  + Q+ L  + F PT +Q+  + DI QD+ +  
Sbjct: 229 LLAHNLAMQKVRLGTQQFSALPLHYQTDLKQRFLATLLFQPTNAQKRVVSDIEQDLIKDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R+  LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R 
Sbjct: 409 MLRKKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERR 468

Query: 469 DEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
            E++       ++E ++AYW+C  I+E +    ++    +  L +     +I ++HGRM 
Sbjct: 469 TEIVMRVKNACVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ VM  FKN    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +
Sbjct: 589 STASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
           A       ++   +  AK ++ + PD+ 
Sbjct: 649 ANLMRDRKMIPTVQHYAKSLIQKYPDVA 676


>gi|315633797|ref|ZP_07889087.1| DNA helicase RecG [Aggregatibacter segnis ATCC 33393]
 gi|315477839|gb|EFU68581.1| DNA helicase RecG [Aggregatibacter segnis ATCC 33393]
          Length = 693

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 257/686 (37%), Positives = 380/686 (55%), Gaps = 26/686 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL+   GVG   +  L K+            DLLF+ P  + DR     
Sbjct: 1   MNTQLLDAI--PLTAISGVGAAIAEKLGKL------GIFNLQDLLFHLPLRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++  ++  TI G + Q +  Q  +R    + L+DGT ++ L FF     M KN    G
Sbjct: 53  IADLQADQYATIEG-VVQSAEVQFGRRPMLMVYLSDGTSKLALRFFNFNAGM-KNSLQPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++++ +    + HP Y  I  N   +    +  +Y    GL     +K+I +A
Sbjct: 111 ARVKAFGEVRRGRFMAEIHHPEYQIIHDNKPLILAETLTPIYPATEGLKQTSLRKLIAQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDE 232
           L  L    L E +  +         +  A   +HNP          E   PA++RL ++E
Sbjct: 171 LQVLEKTPLAELLPTEFNPHPF--DLKSAIQFLHNPPPDVSLVTLEEGKHPAQQRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   +  +   +     + Q+ L  +PF PTK+Q    +DI QD++Q  
Sbjct: 229 LLAYNLAMQKVRSGIQANLAESLIPRSNLKQRFLAQLPFQPTKAQLRVTEDIEQDIAQIY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHATNFRRWFEPLGIQV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R   LE+I +G   +++GTHALFQD + ++ L LVIVDEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKQRIAELEKIKNGTVQMVVGTHALFQDEVAFHNLSLVIVDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI T+ I   R 
Sbjct: 409 MLREKGNQAGVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTIAISEERR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
            E+IER+ V    E ++AYW+C  I+E +    ++       LH+      I ++HGRM 
Sbjct: 469 AEIIERVNVACSQEKRQAYWVCTLIDESEVLEAQAAEAVAEDLHKILPHLRIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM+ FK     LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PSEKQAVMEQFKLAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL V+++T+DGF+I+E+DL+ R  GE+LG KQ+G+ +F +
Sbjct: 589 STASFCVLMYKPPLGKISQKRLQVMRDTQDGFVISEKDLEIRGPGEVLGTKQTGITEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A       +L   +  AK ++ + P 
Sbjct: 649 ANLMRDRKMLPTVQFYAKQLVLKYPQ 674


>gi|229521777|ref|ZP_04411195.1| ATP-dependent DNA helicase RecG [Vibrio cholerae TM 11079-80]
 gi|229341371|gb|EEO06375.1| ATP-dependent DNA helicase RecG [Vibrio cholerae TM 11079-80]
          Length = 692

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 260/675 (38%), Positives = 388/675 (57%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFFNF-TAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + ++HP Y F          P +  VY    GL     + +  +AL+ L    + E
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDQQ--MTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAI 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q ++++ +P+    ++ Q++L  +PF+PTK+Q+  + +I  D+ + + M+R++QGDVG
Sbjct: 239 RSQGQQDVALPLAPIHQLKQQLLAQLPFTPTKAQQRVVAEIEADLEKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 RETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++   
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+H
Sbjct: 539 KNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 APLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLVP 658

Query: 658 IARKDAKHILTQDPD 672
             +  A+HI  + P 
Sbjct: 659 QVQHIARHIHERYPQ 673


>gi|258626032|ref|ZP_05720888.1| ATP-dependent DNA helicase RecG [Vibrio mimicus VM603]
 gi|258581683|gb|EEW06576.1| ATP-dependent DNA helicase RecG [Vibrio mimicus VM603]
          Length = 692

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 260/675 (38%), Positives = 390/675 (57%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQVHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFFNF-TAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + ++HP Y F     +    P +  VY    GL     + +  +AL+ L    + E
Sbjct: 121 GNQGLEIIHPDYKFFAPAQKPDVEPNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDQQ--MTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAI 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+ + + M+R++QGDVG
Sbjct: 239 RSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 RETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VV 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++   
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERIRNAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+H
Sbjct: 539 KNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 APLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLIP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI  + P 
Sbjct: 659 QVQRIARHIHERYPQ 673


>gi|315223950|ref|ZP_07865795.1| DNA helicase RecG [Capnocytophaga ochracea F0287]
 gi|314946122|gb|EFS98126.1| DNA helicase RecG [Capnocytophaga ochracea F0287]
          Length = 724

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 247/717 (34%), Positives = 378/717 (52%), Gaps = 32/717 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M P   N L  P++  RGVG + +  L   ++        + DLL   P+ +IDR    K
Sbjct: 21  MIPE--NILHTPINYLRGVGNQRAELLKTELS-----IYEYQDLLNLFPNRYIDRTKFYK 73

Query: 61  ISEISEER-IVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVF 117
           I+E+      V + G I    + +   QK         D TG + L++F +  + L+   
Sbjct: 74  INELQNNNAEVQLVGKIVNLRTVESAHQKGTRLVATFVDDTGAMELVWF-KGLKWLRESL 132

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-QDVNFPLIEAVYSLPTGL-----SVDLF 171
                  + GK+        M HP     +  +      I+ VY     L     +  + 
Sbjct: 133 KINEPYVIFGKLNFFGGTFSMPHPEMDLLSEFKKAGHSSIQPVYPSTEKLAKRNITNRVM 192

Query: 172 KKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
           ++++      +     E +  ++L   +  S  EA   IH P         S    RL +
Sbjct: 193 RQLVQTVFEEIGNSFAENLPDNILASMNLISKQEAMRNIHFPTNQTLLTKASV---RLKF 249

Query: 231 DELLAGQIALLLMRKQFKKEIGI---PINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQ 286
           +EL   Q+   L+RK    +      P    G         ++PF  T +Q+  +K+I  
Sbjct: 250 EELFYIQV--QLVRKNLLHKQKFQGQPFKNVGDAFMNFYNHHLPFPLTDAQKRVLKEIRA 307

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           D+    +M R+LQGDVGSGKT+VAL+ M  AV+ G QA +MAP  ILA QHY+ I +  +
Sbjct: 308 DVGSNAQMNRLLQGDVGSGKTIVALMTMLLAVDNGCQACLMAPTEILANQHYQNISELLK 367

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
            T + V ++TG+     R+   E++  G+  I+IGTHAL ++ +Q+  L L I+DEQHRF
Sbjct: 368 ETGVTVALLTGSSKTKERKMLDEQLQSGELSILIGTHALLENKVQFRNLGLAIIDEQHRF 427

Query: 407 GVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           GV+QR KL  K T  PH+L+MTATPIPRTL ++  GD+D+S I E P GRKPIKT+    
Sbjct: 428 GVEQRSKLWHKNTIPPHILVMTATPIPRTLAMSVYGDLDVSIIDELPPGRKPIKTLHQFE 487

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIH 522
           N   E  E +K  + +G++ Y + P IEE +  +F+++ E ++ +   F      ++++H
Sbjct: 488 NHRAETYEFIKKEIDKGRQVYVVYPLIEESEALDFKNLTEGYDYITASFPLPKYKVSMVH 547

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GR+   +K+  M+ F     ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGR
Sbjct: 548 GRLKPTEKDVEMERFLRNETQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGR 607

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG E S CILL    +S ++ TR+  +  T DGF IAE DLK R  G+++G +QSG+ 
Sbjct: 608 VGRGSEQSYCILLTGNKMSNDTRTRMETMVRTNDGFEIAEVDLKLRGPGDLMGTQQSGVL 667

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY-LYQYNEAFQFIR 698
              IA       +L+ AR  A  +L  DP+L   + Q I   LY L +Y   + +I 
Sbjct: 668 ALKIADLVKDQDILKAARFQAIDLLKADPNLELPKNQRIAHTLYQLQRYKNLWTYIS 724


>gi|91794823|ref|YP_564474.1| ATP-dependent DNA helicase RecG [Shewanella denitrificans OS217]
 gi|91716825|gb|ABE56751.1| ATP-dependent DNA helicase RecG [Shewanella denitrificans OS217]
          Length = 691

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 259/697 (37%), Positives = 387/697 (55%), Gaps = 26/697 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            P++  +GV KK +  L+K+            DLLF+ P  + DR     I+ +      
Sbjct: 7   TPVTELKGVAKKMAERLAKL------GIQTVQDLLFHLPLRYEDRTQVYPIASLPPGSYG 60

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           TI  +I      Q  +RR     + D TG +TL FF       +N    G  I   G+I+
Sbjct: 61  TIEAHIHSSQILQ-GRRRMLVCQVRDNTGSLTLKFFNFTMAQ-RNSMQNGALIRAYGEIR 118

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LP 186
           +  ++  +VHP Y   +S +   P   +  +Y    GL    + K+  +AL  L    L 
Sbjct: 119 RGSHQAEIVHPDYKIIDSDESFTPSETLSPIYPTTEGLKQASWLKLTEQALVMLAQGGLV 178

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLL 242
           E + + L       S+ +A  I+H P      E       PA++RL  +ELLA  +++L 
Sbjct: 179 ERLPEQLRPNN--LSLPQALQILHRPPNHVSQEALEQGQHPAQQRLIQEELLAHNLSMLK 236

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R++  ++  +P+   G++    L ++PFSPT +Q+    DI  D+ +   M+R++QGDV
Sbjct: 237 LRQRSNQDSAMPMAASGRLLNPFLASLPFSPTGAQQRVGIDISTDLEKPQPMMRLVQGDV 296

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+E G Q  +MAP  +LA+QH      + +   I V  + G +   
Sbjct: 297 GSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHSANFSAWFEPLGIKVGWLAGKLKGK 356

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KA 418
            R ++LE IA G A +++GTHALFQ ++ + KL L+I+DEQHRFGV QRL+L +    + 
Sbjct: 357 ARAQSLEDIASGAAQMVVGTHALFQQNVAFNKLALIIIDEQHRFGVHQRLELREKGVSQG 416

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R ++VI R++  
Sbjct: 417 FHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRREQVIARVQQA 476

Query: 479 LS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
              + ++ YW+C  I+E +    ++  +    L        + ++HGRM   DK++VM  
Sbjct: 477 AKTDKRQTYWVCTLIDESEVLECQAAEDTAAELAIALPELKVGLVHGRMKSADKQAVMAQ 536

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G   LL+ATTVIEVG+DV +AS+++IEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 537 FKMGELDLLVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGAIASHCVLLY 596

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLS  +  RL VL+++ DGF+IA++DL+ R  GE+LG KQ+G+ +  IA       L+
Sbjct: 597 KAPLSYTATKRLGVLRDSNDGFVIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQYLI 656

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
              +K A H++ Q P+   V G   R L +  QY +A
Sbjct: 657 PHIQKLAVHMMQQAPE--QVDGIITRWLGHRQQYVQA 691


>gi|313205993|ref|YP_004045170.1| ATP-dependent DNA helicase recg [Riemerella anatipestifer DSM
           15868]
 gi|312445309|gb|ADQ81664.1| ATP-dependent DNA helicase RecG [Riemerella anatipestifer DSM
           15868]
 gi|315022306|gb|EFT35334.1| ATP-dependent DNA helicase RecG [Riemerella anatipestifer RA-YM]
 gi|325336566|gb|ADZ12840.1| RecG-like helicase [Riemerella anatipestifer RA-GD]
          Length = 696

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 230/696 (33%), Positives = 384/696 (55%), Gaps = 24/696 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG + +  +  ++       +   DLL ++P  ++D+    +++++ +  
Sbjct: 3   LETSIEYLKGVGPERAKLIKNLL-----GISTVEDLLTFYPIRYLDKSRLYRVADLQKNA 57

Query: 69  IV--TITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
            V   + G I +       K  +       D TG I L++F R T+ +       +++ +
Sbjct: 58  DVEMQLKGKIRELQEVVYGKGQKRLSAKFYDETGVIELVWF-RYTKWMVEQMPINKEVFI 116

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS-----LPTGLSVDLFKKIIVEALS 180
            GK+        M HP       + ++  L+  +YS     +  G++   F+ II E + 
Sbjct: 117 FGKVNWFNGVFSMPHPEIELDEKKALSETLL-PIYSGSEKLIKRGVNNKFFQTIIREVIK 175

Query: 181 RLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +    L E +  ++L         EA+  IH P+      W + A +RL ++E    Q+ 
Sbjct: 176 QASFFLEENLPSNILSSLKLIGRREAYQNIHFPQN---ISWINEANKRLKFEEAFFFQLG 232

Query: 240 LLLMRKQFKK-EIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRI 297
             L ++  K   +GIP  + G       +N +PF  T +Q+  +K+I  DM +  +M R+
Sbjct: 233 YGLKKQYQKVSNVGIPFPLVGDYFNNFYQNKLPFELTNAQKRVLKEIRNDMKKPIQMNRL 292

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VAL++M  A++ G QA +MAP  ILAQQHY  I +  + T I + ++TG
Sbjct: 293 LQGDVGSGKTMVALLSMLLALDNGTQACLMAPTEILAQQHYNSIVQLLEGTGIEIRLLTG 352

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-Q 416
           +  ++ R+   E +  G+  I++GTHA+ +D++++  L L I+DEQHRFGV QR KL  +
Sbjct: 353 STKKSERKDIHEGLESGRLSILVGTHAILEDAVKFKNLGLGIIDEQHRFGVAQRAKLWSK 412

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH+L+MTATPIPRTL ++   D+D+S I E P GRKPI T          V +  K
Sbjct: 413 NKIPPHILIMTATPIPRTLAMSFYSDLDVSVIDELPTGRKPIITAHRREKDRLSVYQFAK 472

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             + +G++ Y++ P IEE +  ++++++E F  + ++F    + ++HG+M   +K+  M+
Sbjct: 473 EEIQKGRQIYFVYPLIEESETLDYKNLMEGFEIVLDYFKDYEVTMLHGKMKPHEKDEAMN 532

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +G  ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S CIL+
Sbjct: 533 YFASGKAQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILM 592

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
               LS     R+  +  T DGF I+E D++ R  G+ILG +QSG+  F         S+
Sbjct: 593 SSDKLSTEGRKRIKTMCETNDGFKISEVDMQLRGPGDILGTQQSGIVDFKKLDLTKDASV 652

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           +++A+K    ++  DP+LT      +R   Y+ QY 
Sbjct: 653 IKVAQKIVTLLVQSDPNLTHPAHAQLR-NYYIKQYK 687


>gi|146296794|ref|YP_001180565.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410370|gb|ABP67374.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 679

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 245/667 (36%), Positives = 379/667 (56%), Gaps = 17/667 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   +   +GVG+       K+         +  DLL++ P  ++D     KI E+S
Sbjct: 1   MKLLEKEIRYLKGVGESREKLFRKL------GIKKVEDLLWHIPRKYLDYSKLKKIKELS 54

Query: 66  EERIVTITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           +  I +  G +  + +  + +  +  KI + DGTG +T ++F +  + +K+V  EG    
Sbjct: 55  DGEIESFVGTVCGKPTEIETKSVKIIKIPVEDGTGVVTTVWFNQ--DYIKSVLKEGEVFC 112

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183
            +GKI++    I + +P +  ++   ++   I  VY+   GLS  + + I+   L ++  
Sbjct: 113 FSGKIERRGFYIEVKNPEFEKYDQNLLHTGRIVPVYNSTEGLSQKVMRNIVNNLLEQVEG 172

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            L + I   + QK     I  A   IH P         S AR RL ++E    Q++LLL+
Sbjct: 173 QLGDVIPPYIRQKYHLSEINFAMRNIHFPDNMLSL---SLARRRLVFEEFYLLQLSLLLL 229

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++  +K  G+ +    +  ++  R +PF  T +Q+  + +I  D+    +M R++QGDVG
Sbjct: 230 KENIEKNEGVKVQNAKENIEEFKRLLPFELTNAQKRVLDEIADDLESSKQMNRLIQGDVG 289

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
            GKT+VAL A  A ++ G Q  +MAP  +LA QHY   KKY +N  I V ++ G+ P+  
Sbjct: 290 CGKTVVALAAAYATIKGGYQVALMAPTEVLAIQHYNESKKYFKN-GINVRLLIGSTPKKE 348

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +   L+ I +G  H++IGTHAL Q+ +++  L L I DEQHRFGV QR++LT+K  +P++
Sbjct: 349 KEVILKEIEYGLCHMVIGTHALIQEDVKFKNLGLAITDEQHRFGVIQRVELTKKGNSPNI 408

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL L   GD+DIS I E P GRK I T  +  +    V   +K  L EG+
Sbjct: 409 LVMTATPIPRTLSLVLYGDLDISIIDEMPPGRKKILTYAVDESFRQRVYNFIKKQLDEGR 468

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           + YWICP IEE +  N +S VE   SL E F    +I  +HG++S  +++ V+  FK G 
Sbjct: 469 QVYWICPLIEESETLNAKSAVEFAKSLKEGFFKDYNIGCLHGKLSSKERDKVLQEFKEGL 528

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTV+EVGI+V +A++++IENAE FGLAQLHQLRGRVGRGE  S CIL ++   S
Sbjct: 529 IHILVSTTVVEVGINVPNATVMVIENAERFGLAQLHQLRGRVGRGEHQSYCIL-FNQSDS 587

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + S  R+  +  +++GF IAE DLK R  G++ G KQ G+  F IA       +L+ ARK
Sbjct: 588 EISKKRMVAITKSQNGFEIAEMDLKLRGPGDLFGTKQHGLMNFKIADIVSDMEILKEARK 647

Query: 662 DAKHILT 668
            A+  + 
Sbjct: 648 AAEETIK 654


>gi|324990137|gb|EGC22075.1| DNA helicase RecG [Streptococcus sanguinis SK353]
          Length = 671

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 240/688 (34%), Positives = 389/688 (56%), Gaps = 27/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D      + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL------GLETLQDLLLYFPFRYEDF-KSKNVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    +    +D     ++ VY L  G+S     K+I  A  +    +L 
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S  EA   +H P+   D+     A  R+ ++EL   Q+ L +++++
Sbjct: 169 ENLPQPLLERYQLVSRVEAVRAMHFPKDLADY---KQALRRVKFEELFYFQMQLQVLKRE 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVGSG
Sbjct: 226 TKAVSNGLKIDWQSDAVAEKKKSLPFELTPAQERSLTEILQDLQSSGHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A RR
Sbjct: 286 KTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I +GQ  +I+GTHAL Q++++Y+ L LVI+DEQHRFGV+QR  L +K   P VL+
Sbjct: 344 ETLAAIENGQVDMIVGTHALIQEAVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ LK  L +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGAQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G   
Sbjct: 464 YFISPLIEESEALDLKNAIALEEELTAYFGRQTQVALLHGKMKSEEKEAIMQDFKEGRTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGNKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYN 691
             I T DP+  +     + I L+L + +
Sbjct: 643 SQI-TADPNWRTDPNWHL-IALHLDKRD 668


>gi|261492178|ref|ZP_05988748.1| helicase RecG [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261312158|gb|EEY13291.1| helicase RecG [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 693

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 264/698 (37%), Positives = 387/698 (55%), Gaps = 30/698 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG   S   S+I            DLLF+ P  + DR     I+++  E   T
Sbjct: 10  PLTALSGVGAAISEKSSRI------GINNVQDLLFHLPMRYEDRTRITPIADVRPESFAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I GY+ Q +  Q  KR    + L+D T +I L FF     M KN    G ++   G+IK+
Sbjct: 64  IEGYV-QLTEVQFGKRPILSVTLSDSTSKIMLKFFNFNAGM-KNSLATGVRVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            +    + HP Y  I  N   V    +  +YS   GL     +K+  +AL+ L  +   E
Sbjct: 122 GRFMAEIHHPEYQIIRDNQPLVLAETLTPIYSTTEGLKQASLRKLTEQALALLEKVKVAE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            +  +    K   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  +
Sbjct: 182 LLPDEYNPHK--YSLKEALQLLHRPPPTISAEVLEKGDHPAQKRLIFEELLAHNLAMQQL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   K++    +  +  I Q+ L ++PF PT +Q     DI QD+++ + M+R++QGDVG
Sbjct: 240 RLGVKQQYAEALTYQTDIKQRFLDSLPFKPTHAQSRVTADIEQDLAKPHPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A++ G Q  +MAP  ILA+QH      +     I V  + G +    
Sbjct: 300 SGKTLVAALAALLAIDNGKQVALMAPTEILAEQHANNFANWLNPFGIEVGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   LE I +G   +IIGTHALFQD+++++ L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RTAQLEAIKNGDVQMIIGTHALFQDNVEFHHLALVIIDEQHRFGVHQRLTLREKGAKENN 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV+I  +R  E+++R+    
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEDRRAEIVQRVYQAC 479

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             E ++AYW+C  I+E +    ++       L        I ++HGR+   +K+++M  F
Sbjct: 480 KQEHRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRLKPQEKQAIMAEF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 540 KAANLDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLMYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL V+++++DGF IAE+DL+ R  GEILG KQ+GM +F +A       ++ 
Sbjct: 600 PPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEFKVADLMRDRKMIP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSI--RILLYLYQYNEA 693
           + ++ AK I++++        +++  R L    +Y  A
Sbjct: 660 LVQRYAKQIISEN----QPLAEALIKRWLDNKAEYTNA 693


>gi|88861118|ref|ZP_01135752.1| ATP-dependent DNA helicase recG [Pseudoalteromonas tunicata D2]
 gi|88816840|gb|EAR26661.1| ATP-dependent DNA helicase recG [Pseudoalteromonas tunicata D2]
          Length = 694

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 264/704 (37%), Positives = 385/704 (54%), Gaps = 26/704 (3%)

Query: 4   SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
           S  N     +   +GVG K ++ L+K+      N     DLLF+ P  + DR     I E
Sbjct: 3   SLPNLALYSVDQLKGVGPKLAVRLAKL------NIRTVQDLLFHLPLRYEDRTRVYPICE 56

Query: 64  ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           +     VT+ G I +H      KR+     +NDGT  +TL FF   T   KN    G+ I
Sbjct: 57  LQAHSHVTVIGEI-EHCQVTFGKRKMMICQINDGTARLTLRFFSF-TAAQKNNLVAGKVI 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSR 181
              G++++ +    M HP Y              +  VY    GL     + +  +A+  
Sbjct: 115 RCFGEVRRGQVGYEMAHPEYSLVEQYQTIITDETLTPVYPTTEGLKQLSLRNLCDQAVEL 174

Query: 182 LP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLA 235
           L    + E +   L   +   S+ +A   +H P      E       PA++RLA +ELLA
Sbjct: 175 LKKYDIEELLPAQLQPAQ--LSLKQALLFLHQPTPDVCTEQLALGLHPAQQRLALEELLA 232

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
             ++LL +R++ +  + + +     + Q+ L  +PF PT +Q+  + +I QD++  + M+
Sbjct: 233 QNLSLLKLRQKAQAHLAVQLQSNHALEQQFLAQLPFKPTHAQQRVVTEIKQDLTLAHPMM 292

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKTLVA +A   A+  G Q  +MAP  ILA+QHY   K +     I V  +
Sbjct: 293 RLVQGDVGSGKTLVAALAALTAIGQGYQVALMAPTEILAEQHYLSFKNWFSTLDIEVAWL 352

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
            G      R   L  +A+GQA +IIGTHALFQ  +Q++ L L+I+DEQHRFGV QRL+L 
Sbjct: 353 AGKTKGKEREATLANLANGQAQMIIGTHALFQTQVQFFNLALIIIDEQHRFGVHQRLELR 412

Query: 416 QKA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           +K       PH L+MTATPIPRTL +T+  D++ S I E P GR PI TV +P  R +E+
Sbjct: 413 EKGKFGDCYPHQLVMTATPIPRTLAMTAYADLETSIIDELPPGRTPITTVALPDTRREEI 472

Query: 472 IERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDID 529
           IER++     + ++ YW+C  I+E +    ++  +    L        I ++HGRM   +
Sbjct: 473 IERVRNACTQQQRQVYWVCTLIDESEVLQCQAAEDNAKELTVLLPELKIGLVHGRMKPAE 532

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+++M+ FK G   +L+ATTVIEVG+DV +AS+IIIEN E  GLAQLHQLRGRVGRG   
Sbjct: 533 KQAIMEQFKQGEINVLVATTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGAIA 592

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+LLYH PLS  +  RL+VL+ + DGF+IA++DL+ R  GE+LG KQ+G+ +F IA  
Sbjct: 593 SHCLLLYHAPLSHTAKKRLAVLRESNDGFVIAQKDLEIRGPGEVLGSKQTGLAEFKIADL 652

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
               +L+   R  A  +L   PDL+       R L     Y +A
Sbjct: 653 VRDQALVRDVRPMAIFLLNNHPDLS--EKLIERWLAKREHYAQA 694


>gi|293610810|ref|ZP_06693110.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827154|gb|EFF85519.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 681

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 259/672 (38%), Positives = 390/672 (58%), Gaps = 21/672 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             +   +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R  
Sbjct: 2   TSVHQLQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSY 55

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G +     F   KR+    L+ D  G++TL F++     L +    G ++ + G+++
Sbjct: 56  LLEGEVKSI-DFPPGKRKSMAALVQDEFGKVTLRFYHIYKN-LTDKIKPGHRLRIFGEVR 113

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
                + M HP   + H    +    + A+Y    GL+    ++ + +AL      LPE 
Sbjct: 114 VGARGLEMYHPEIQLIHEHTPLPKTQLTAIYPSTDGLTQPKLREYVKQALKHHSDALPEL 173

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244
           + K      +     EA   IH P    +     + + PA++RL ++EL+A QI+LL  R
Sbjct: 174 LPKQYTNGYAL---KEALYYIHEPPVDANMLQLAQGSHPAQQRLIFEELVAHQISLLNRR 230

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              ++      +    +A+K+L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+
Sbjct: 231 AYIRQIASPAFSSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGA 290

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R
Sbjct: 291 GKTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKAR 350

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---AP 421
            +A ++I  G A +I+GTHALFQD++ + KL LVI+DEQHRFGV QRL L  K      P
Sbjct: 351 AQAEQQIKEGHAELIVGTHALFQDNVGFAKLGLVIIDEQHRFGVDQRLALRNKGAEQFTP 410

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     E
Sbjct: 411 HQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCRE 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           GK+AYW+C  +E+ +  + ++    +  + E F   +I ++HG+M   +K++VM +FKN 
Sbjct: 471 GKQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNN 530

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LLIATTVIEVG+DV ++SI++IENAE  GL+QLHQLRGRVGRG + S C+LLY  PL
Sbjct: 531 ELQLLIATTVIEVGVDVPNSSIMVIENAERLGLSQLHQLRGRVGRGAQASFCVLLYKTPL 590

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A 
Sbjct: 591 SQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAH 650

Query: 661 KDAKHILTQDPD 672
             A+ +L   P+
Sbjct: 651 YVAQQVLKDYPE 662


>gi|153212584|ref|ZP_01948331.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 1587]
 gi|124116455|gb|EAY35275.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 1587]
          Length = 692

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 261/675 (38%), Positives = 388/675 (57%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFFNF-TAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + ++HP Y F          P +  VY    GL     + +  +AL  L    + E
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQLTLRNLTDQALVLLEKSAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDQQ--MTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAI 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+ + + M+R++QGDVG
Sbjct: 239 RSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 RETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++   
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+H
Sbjct: 539 KNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 APLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLVP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI  + P 
Sbjct: 659 QVQRIARHIHERYPQ 673


>gi|91214598|ref|ZP_01251571.1| ATP-dependent DNA helicase RecG [Psychroflexus torquis ATCC 700755]
 gi|91187025|gb|EAS73395.1| ATP-dependent DNA helicase RecG [Psychroflexus torquis ATCC 700755]
          Length = 700

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 246/704 (34%), Positives = 379/704 (53%), Gaps = 23/704 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG   +  L   +     +   F +LL + P  +ID+    KISE+ +  
Sbjct: 6   LQTPIEYLKGVGPNRADLLKTEL-----HIHSFQNLLEFFPFRYIDKSRFYKISELQDNS 60

Query: 69  -IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V I G I+   +  +++ +       D TG I L++F     +L+NV        + G
Sbjct: 61  AEVQIIGKITGVRTLPMKQGKRVVANFQDDTGSIELVWFRGHKWILENV-NTNAPYVIFG 119

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPT-----GLSVDLFKKIIVEALSR 181
           K+        M HP             + +  VY         G+S  +   ++   L +
Sbjct: 120 KLNNFNGSFSMPHPEIEELEKAKTKSNVKMYPVYPSTEKLSKRGISNRMISTLMFGLLEQ 179

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
                E +   ++      S  EA   +H P+ +   E  + A+ RL ++E    Q+ LL
Sbjct: 180 SGNFSETLPSSIIADLKLISKTEAMINVHFPQSS---ELLAKAQFRLKFEEFFYIQLQLL 236

Query: 242 LMRKQFKKEIG-IPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
                 K +I        G+         +PF  T +Q+  +K+I +D+    +M R+LQ
Sbjct: 237 RKNAVHKSKIKGFRFKQVGEYFNAFYNTVLPFELTGAQKRVLKEIRKDLGSNAQMNRLLQ 296

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VAL++M  A++ G QA +MAP  ILA QHYE I +  +   + VEI+TG+ 
Sbjct: 297 GDVGSGKTIVALMSMLIAIDNGFQACLMAPTEILASQHYEGISELCEPIGVQVEILTGST 356

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            +  R+   ER+ +G+ HI+IGTHAL +D++++  + L ++DEQHRFGV QR KL +K T
Sbjct: 357 KKKDRKVLHERLQNGELHILIGTHALIEDTVKFKNIGLAVIDEQHRFGVAQRAKLWKKNT 416

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PHVL+MTATPIPRTL ++  GD+DIS I E P GRKPIKTV    +   +V + +K  
Sbjct: 417 LPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPIKTVHRFDSNRLKVFKFIKDE 476

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMD 535
           + +G++ Y + P IEE    +++ +++ + S+   F      I+I+HG+M   DK   M+
Sbjct: 477 VHKGRQVYIVYPLIEESANFDYKDLMDGYASIEREFPKPKYQISIVHGKMKPQDKAYEME 536

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E S C+L+
Sbjct: 537 RFVKGKTQIMVATTVIEVGVNVPNASLMIIESAERFGLSQLHQLRGRVGRGAEQSYCVLI 596

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
               LS +  TR+  L  T DGF IAE DLK R  G ++G +QSG+ +  IA     + +
Sbjct: 597 TGKKLSADGKTRMETLTGTNDGFEIAEVDLKLRGPGNLMGTQQSGVLELKIADLVKDNQI 656

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLY-LYQYNEAFQFIR 698
           L+IAR  A H++  DP+        I +    L+     + +I 
Sbjct: 657 LKIARSYAHHVIKADPNFKLEEHHMINVAFRALFNDKTIWNYIS 700


>gi|110833029|ref|YP_691888.1| ATP-dependent DNA helicase RecG [Alcanivorax borkumensis SK2]
 gi|110646140|emb|CAL15616.1| ATP-dependent DNA helicase RecG [Alcanivorax borkumensis SK2]
          Length = 703

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 262/683 (38%), Positives = 377/683 (55%), Gaps = 32/683 (4%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           +GVG   +  L+K+            DLLF+ P  + DR     I  +  E  V I G +
Sbjct: 15  KGVGPAAAEKLAKL------GLHNLEDLLFHLPFRYEDRTRISPIGSLRPETGVVIEGQV 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
              +     +RR     + DGTG +TL F++      KN    GR I V G+ +     +
Sbjct: 69  MA-ADVIFGRRRSLLCKVADGTGMVTLRFYHFSAAQ-KNTLERGRTIRVYGEPRPGSAGL 126

Query: 137 IMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--EWIEK 191
              HP Y    +     PL   +  VY    G+S    + +  +AL  L   P  E I  
Sbjct: 127 EFYHPEYQLDYADSGLPPLEKALTPVYPTTDGVSQKTLRNLTGQALKYLQAHPPQELIPA 186

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQF 247
            LL +   PS+A+A + +HNPR         E   PA +RL  +E++A Q+ +L  R   
Sbjct: 187 QLLDQSGLPSLADALSKLHNPRPDDPVNLLLEGKHPAVKRLVMEEMVAHQLGMLQKRAGQ 246

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K      +  +  + +K+  ++PF+ T +Q+  I +++ DM Q + MLR++QGDVGSGKT
Sbjct: 247 KAFHAPRLGGQT-LFEKLQDSLPFNLTGAQKRVIGELMGDMKQAHPMLRLVQGDVGSGKT 305

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           LVA  A  AA+E+G Q  +MAP  +LA+QH E    +     I V  + G++    RR+ 
Sbjct: 306 LVAAAAALAAIESGYQVALMAPTELLAEQHRENFHHWLAPLGIKVHWLAGSLGVKARRET 365

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------- 420
              +A G AHI++GTHALFQ+++Q+++L L I+DEQHRFGVQQRL L +K          
Sbjct: 366 NAALADGSAHIVVGTHALFQEAVQFHRLGLTIIDEQHRFGVQQRLALREKGREDNAHGIQ 425

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L++TATPIPRTL ++  GD+D S I E P GRKPI T+++P +R  +VIER+    
Sbjct: 426 VPHQLVLTATPIPRTLAMSVYGDLDTSVIDEMPPGRKPIDTLVLPESRRPQVIERINDAC 485

Query: 480 S-----EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
                 +  +AYW+C  IEE +E   ++    F  L        + ++HGRM   +K   
Sbjct: 486 RPSAKKKNTQAYWVCTLIEESEELQAQAAEATFAELQIALPELKVELVHGRMKAKEKAER 545

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F  G  +LLIATTVIEVG+DV +A+++++ENAE  GLAQLHQLRGRVGRG E S C+
Sbjct: 546 MARFSRGEAQLLIATTVIEVGVDVPNATLMVMENAERLGLAQLHQLRGRVGRGAEQSYCL 605

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLS     RL+V+++T DGF+IAEEDLK R  GE LG +Q+G   F IA     +
Sbjct: 606 LLYKNPLSHTGKRRLAVMRDTTDGFVIAEEDLKLRGPGEWLGTRQTGDLAFRIADLVRDE 665

Query: 654 SLLEIARKDAKHILTQDPDLTSV 676
           +L+E A++ A  ++   P     
Sbjct: 666 ALMEPAKEIANKLMQDYPQWIDP 688


>gi|119475372|ref|ZP_01615725.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2143]
 gi|119451575|gb|EAW32808.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2143]
          Length = 697

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 246/673 (36%), Positives = 367/673 (54%), Gaps = 22/673 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +   +GVG K +  L+ +            DLLF+ P  + DR     I  +       I
Sbjct: 13  VRELKGVGPKMADKLAGL------GIHTVQDLLFHLPLRYQDRTRITPIGALQPGIDAVI 66

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G + + +     +RR     L D TG +TL FF+      K     G  +   G+ ++ 
Sbjct: 67  EGEV-RAADIAFGRRRSLVCRLQDHTGTVTLRFFHFSAAQ-KENLTNGVTLRCFGEARRG 124

Query: 133 KNRIIMVHPHYIFHN--SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPEW 188
            + + M HP Y   +  + + N   +  +Y    GLS   ++K+ ++AL+ L    L EW
Sbjct: 125 ASGLEMYHPEYHAVDPLNPEPNEQSLTPIYPSSEGLSQQGWRKLALQALTMLQPNTLIEW 184

Query: 189 IEKDLLQKKSFP-SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
           + +      + P S+  A   +H+P      E         +++LA++ELLA  ++LL +
Sbjct: 185 LPQSFNIGDTLPISLEHALQYLHSPPIDAPVELLREGKHAYQQQLAFEELLAHNLSLLKL 244

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q  K    PI     + Q+ L  + F  T++Q+    +I +DMS    MLR++QGDVG
Sbjct: 245 RNQTLKHGAPPIAKNSDLNQRFLHQLGFDFTRAQQRVAAEIDRDMSSAKPMLRLVQGDVG 304

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   A  +G Q  IMAP  ILA+QH     ++     + +  ++G +    
Sbjct: 305 SGKTVVAALAALNAAASGYQVAIMAPTEILAEQHLANFTRWMTPLGLDIGWLSGKVKGKQ 364

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R++ L+ IA     II+GTHALFQ  + + +L L ++DEQHRFGV QRL L +KA     
Sbjct: 365 RQQQLKAIAEHSVDIIVGTHALFQQEVVFARLGLAVIDEQHRFGVHQRLALKEKANQDIG 424

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D S I E P GR PI TV+I  NR  ++I+R++   
Sbjct: 425 QPHQLIMTATPIPRTLAMSAYADLDTSVIDELPPGRTPISTVVIDNNRRSQIIDRVRNAC 484

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            EG++ YW+C  IEE      ++  +    L        +A+IHGRM   +KES+M +FK
Sbjct: 485 VEGRQTYWVCTLIEESDTLEAQAAEDTCEQLKLALPDIKVALIHGRMKPSEKESIMAAFK 544

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y  
Sbjct: 545 ANQIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGPTASHCVLMYQA 604

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PL K    RL +++ + DGF+IAE+DL+ R  GE+LG +Q+G+ +  IA  E    LLE 
Sbjct: 605 PLGKLGKQRLQIMRQSSDGFVIAEKDLELRGPGELLGTRQTGLMQLRIANLERDSHLLEA 664

Query: 659 ARKDAKHILTQDP 671
               A+ ++   P
Sbjct: 665 VNILARQMINDHP 677


>gi|303236600|ref|ZP_07323181.1| ATP-dependent DNA helicase RecG [Prevotella disiens FB035-09AN]
 gi|302483104|gb|EFL46118.1| ATP-dependent DNA helicase RecG [Prevotella disiens FB035-09AN]
          Length = 698

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 242/679 (35%), Positives = 380/679 (55%), Gaps = 22/679 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++ L   L    GVG +    LSK +       + + DLL Y+P  ++DR     ISE+ 
Sbjct: 1   MDILQQDLMYLSGVGPRKKEILSKEL-----GISTYRDLLEYYPYKYVDRTKVYLISELV 55

Query: 66  EERI-VTITGYISQHSSFQLQKRRPYKI-LLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            +   V I G I     F++ KR+   +   +DG G   L++F     + KN +  G++ 
Sbjct: 56  PDMPFVQIKGRILSFEEFEMGKRKKRVVAHFSDGHGVCDLVWFNGSQYIYKN-YIIGKEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEA 178
            V GK      R    HP     +   +N   ++  Y         G++    +K+    
Sbjct: 115 IVFGKPTVYNGRFNFSHPDIDEASELQLNDMGMQPFYITTEKMKKAGITSRAIEKLTKTL 174

Query: 179 LSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           +++L   LPE +   + ++    S  EA   IH P+  +D   T  A+ RL ++EL   Q
Sbjct: 175 IAKLNTTLPETLPDFITERLHLISRNEAVRKIHYPKSIED---TQRAKVRLKFEELFYVQ 231

Query: 238 IALLLMRK-QFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L       +K  G+     G        + +PF  T +Q+  +K+I  DM    +M 
Sbjct: 232 LNILRYASDHRRKYRGLYFKKVGAQFNWFYAHNLPFELTNAQKRVMKEIRADMGSGQQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  AV+ G QA +MAP  ILA+QH + +K + +   + +E++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLIAVDNGFQACLMAPTEILAEQHLQTLKDFLKGMNLRIELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG +    R++ L+ +  G  HII+GTHA+ +D +Q+  L L ++DEQHRFGV QR KL 
Sbjct: 352 TGIVKGKKRKEVLDGLLDGSIHIIVGTHAIIEDKVQFNNLGLAVIDEQHRFGVAQRAKLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+     +   + + 
Sbjct: 412 SKNENPPHVLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKFDTQTVSLYDG 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  +  G++ Y + P I+E ++ + +++   + +L E F   S++ IHG+M D +KE+ 
Sbjct: 472 IRKQIQLGRQVYIVFPLIKESEKIDLKNLESGYEALKEVFPECSMSKIHGKMKDKEKEAE 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F  G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MKLFVEGKTQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGAEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+ +  L+  +  R+ ++ +T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTNQKLTTETRKRIEIMCDTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQDP 671
             L+++AR +AK I+  DP
Sbjct: 652 GQLVQMARDEAKRIIEDDP 670


>gi|262280238|ref|ZP_06058022.1| ATP-dependent DNA helicase RecG [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258016|gb|EEY76750.1| ATP-dependent DNA helicase RecG [Acinetobacter calcoaceticus
           RUH2202]
          Length = 681

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 260/672 (38%), Positives = 388/672 (57%), Gaps = 21/672 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             +   +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R  
Sbjct: 2   TSVHQLQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIAMNQLVVGRSY 55

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G +     F   KR+    L+ D  G++TL F++     L +    G ++ + G+++
Sbjct: 56  LLEGEVRSI-DFPPGKRKSMAALVQDEFGKVTLRFYHIYKN-LTDKIKPGHRLRIFGEVR 113

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
                + M HP     N         + A+Y    GL+    ++ + +AL      LPE 
Sbjct: 114 VGARGLEMYHPEIQLINEHTPLPKTQLTAIYPSTDGLTQPKLREYVKQALKHHSDALPEL 173

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244
           + K      +     EA   IH P    +     + + PA++RL ++EL+A QI+LL  R
Sbjct: 174 LPKQYTNGYAL---KEALYYIHEPPVDANMVQLAQGSHPAQQRLIFEELVAHQISLLNRR 230

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              ++      +    +A+K+L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+
Sbjct: 231 AYIRQIASPAFSSSKILAKKLLEALPFQMTNAQKRVSKEILNDLKQNQPMLRLVQGDVGA 290

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R
Sbjct: 291 GKTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKAR 350

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---AP 421
            +A ++I  G A +IIGTHALFQDS+ + KL LVI+DEQHRFGV QRL L  K      P
Sbjct: 351 AQAEQQIKEGHAELIIGTHALFQDSVGFAKLGLVIIDEQHRFGVDQRLALRNKGAEQFTP 410

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     +
Sbjct: 411 HQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCRD 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           GK+AYW+C  +E+ +  + ++    +  + E F   +I ++HG+M   +K++VM +FKN 
Sbjct: 471 GKQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNN 530

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LLIATTVIEVG+DV ++SI++IENAE  GL+QLHQLRGRVGRG + S C+LLY  PL
Sbjct: 531 ELQLLIATTVIEVGVDVPNSSIMVIENAERLGLSQLHQLRGRVGRGAQASFCVLLYKTPL 590

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A 
Sbjct: 591 SQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAH 650

Query: 661 KDAKHILTQDPD 672
             A+ +L   P+
Sbjct: 651 YVAQQVLKDYPE 662


>gi|305667019|ref|YP_003863306.1| ATP-dependent DNA helicase RecG [Maribacter sp. HTCC2170]
 gi|88709254|gb|EAR01488.1| ATP-dependent DNA helicase RecG [Maribacter sp. HTCC2170]
          Length = 701

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 246/691 (35%), Positives = 376/691 (54%), Gaps = 25/691 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS- 65
           N L  P++  +GVG   +  L      G    + + DLL   P+ +ID+    KI ++  
Sbjct: 4   NYLQTPITYLKGVGPNRAQTLQ-----GELGISTYQDLLNLFPNRYIDKTQYYKIGQLQR 58

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               V I G I +  + + +K +       D TGE+ L++F R  + ++          +
Sbjct: 59  SNADVQIKGKIIRIKTVEQKKGKRLVATFIDETGEMELVWF-RGQKWIRENLKLNTPYVI 117

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPT-----GLSVDLFKKIIVEAL 179
            GK      +  M HP        +     L++ VY         G++  +  K++ +  
Sbjct: 118 FGKCNWYSGKFSMPHPEMELLTEHEQGLKVLMQPVYPSTEKLGNSGITNRVINKLLQQLF 177

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
                   E +   LL      S +EA   IH P+     E+ + A+ RL ++EL   Q+
Sbjct: 178 VETKGKFMETLSDGLLHDLKLISKSEALFNIHFPKNQ---EFLAKAQFRLKFEELFYIQL 234

Query: 239 ALLLMRKQFKKEIGIPINVEGK---IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
             L+ +   +K+     N +       +    ++PF  T +Q+  IK+I  DM    +M 
Sbjct: 235 -QLISKNMLRKQKIKGFNFDQVGELFNEFFKNHLPFELTTAQKRVIKEIRADMGSNAQMN 293

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT+VAL+ M  A++ G QA +MAP  ILA QH+  IK+  Q+  + + ++
Sbjct: 294 RLLQGDVGSGKTIVALMTMLLAIDNGYQACLMAPTEILANQHFNGIKEQLQDIGVNIALL 353

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++ ++ R    E++ +G+ HI+IGTHAL +D ++Y  L L IVDEQHRFGV QR KL 
Sbjct: 354 TGSIKKSARTIIHEQLENGELHILIGTHALLEDKVKYKNLGLAIVDEQHRFGVAQRSKLW 413

Query: 416 QKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            K    PH+L+MTATPIPRTL ++  GD+DIS I E P GRK IKTV    +   +V   
Sbjct: 414 HKNEVPPHILVMTATPIPRTLAMSLYGDLDISVIDELPPGRKAIKTVHRYDSNRLKVFGF 473

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKE 531
           +K  + +G++ Y + P I+E +  +++ +++ + S+   F      I+I+HG+M   DK+
Sbjct: 474 IKDEIKKGRQIYVVYPLIQESEALDYKDLMDGYESIARDFPLPDYQISIVHGKMKPADKD 533

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             M+ F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG + S 
Sbjct: 534 YEMERFVKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGADQSY 593

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           CIL+    LS  + TRL  +  T DGF IAE DLK R  G+I+G +QSG+    IA    
Sbjct: 594 CILMTSFKLSSEAKTRLETMVRTNDGFEIAEVDLKLRGPGDIMGTQQSGVLNLKIADIVK 653

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
            + +L+ AR  A  IL +DP L       IR
Sbjct: 654 DNDILKTARWYAMKILKEDPSLEKQEHLVIR 684


>gi|254225434|ref|ZP_04919045.1| ATP-dependent DNA helicase RecG [Vibrio cholerae V51]
 gi|125622068|gb|EAZ50391.1| ATP-dependent DNA helicase RecG [Vibrio cholerae V51]
          Length = 692

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 260/675 (38%), Positives = 388/675 (57%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKIAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFFNF-TAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + ++HP Y F          P +  VY    GL     + +  +AL  L    + E
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQLTLRNLTDQALVLLEKSAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDQQ--MTLAQALKIIHRPSADIDLRLFEQGRHPAQIRLIMEELLAQNLSMLAI 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q ++++ +P+    ++ Q++L  +PF+PTK+Q+  + +I  D+ + + M+R++QGDVG
Sbjct: 239 RSQGQQDVALPLAPVHQLKQQLLAQLPFTPTKAQQRVVAEIEADLEKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHSLNFAQWLEPMGIRVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 RETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++   
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+H
Sbjct: 539 KNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 APLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLVP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI  + P 
Sbjct: 659 QVQRIARHIHERYPQ 673


>gi|325123619|gb|ADY83142.1| ATP-dependent DNA helicase [Acinetobacter calcoaceticus PHEA-2]
          Length = 681

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 258/672 (38%), Positives = 390/672 (58%), Gaps = 21/672 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             +   +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R  
Sbjct: 2   TSVHQLQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSY 55

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G +     F   KR+    L+ D  G++TL F++     L +    G ++ + G+++
Sbjct: 56  LLEGEVKSI-DFPPGKRKSMAALVQDEFGKVTLRFYHIYKN-LTDKIKPGHRLRIFGEVR 113

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
                + M HP   + H    +    + A+Y    GL+    ++ + +AL      LPE 
Sbjct: 114 VGARGLEMYHPEIQLIHEHTPLPKTQLTAIYPSTDGLTQPKLREYVKQALKHHSDALPEL 173

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244
           + K      +     EA   IH P    +     + + PA++RL ++EL+A QI+LL  R
Sbjct: 174 LPKQYTNGYAL---KEALYYIHEPPVDANMLQLAQGSHPAQQRLIFEELVAHQISLLNRR 230

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              ++      +    +A+K+L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+
Sbjct: 231 AYIRQIASPAFSSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGA 290

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R
Sbjct: 291 GKTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKAR 350

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---AP 421
            +A ++I  G A +I+GTHALFQD++ + KL LVI+DEQHRFGV QRL L  K      P
Sbjct: 351 AQAEQQIKEGHAELIVGTHALFQDNVGFAKLGLVIIDEQHRFGVDQRLALRNKGAEQFTP 410

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     +
Sbjct: 411 HQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCRD 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           GK+AYW+C  +E+ +  + ++    +  + E F   +I ++HG+M   +K++VM +FKN 
Sbjct: 471 GKQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNN 530

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LLIATTVIEVG+DV ++SI++IENAE  GL+QLHQLRGRVGRG + S C+LLY  PL
Sbjct: 531 ELQLLIATTVIEVGVDVPNSSIMVIENAERLGLSQLHQLRGRVGRGAQASFCVLLYKTPL 590

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A 
Sbjct: 591 SQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAH 650

Query: 661 KDAKHILTQDPD 672
             A+ +L   P+
Sbjct: 651 YVAQQVLKDYPE 662


>gi|254482756|ref|ZP_05095994.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2148]
 gi|214037115|gb|EEB77784.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2148]
          Length = 688

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 251/678 (37%), Positives = 379/678 (55%), Gaps = 23/678 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            P++  RGVG K +  L+      +    R  DLLF+ P  + DR     I    +   V
Sbjct: 7   DPVTQLRGVGPKLATKLA------DVGIHRVEDLLFHLPLRYQDRTRVTPIGATQDGVDV 60

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            I G + + +     +RR   + L DGTG I+L FF+      KN    G ++   G+++
Sbjct: 61  VIEGEV-RVADIAFGRRRSLVVRLQDGTGTISLRFFHFSAAQ-KNNLKPGTRLRCFGQVR 118

Query: 131 KLKNRIIMVHPHYI-FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
           +  + + M HP Y      +      +  VY    G+  + ++K+  +A++RL      E
Sbjct: 119 RGGSGLEMYHPEYRQVIEGEVETEDALTPVYPALGGIGQNQWRKLCAQAVTRLKHSTPQE 178

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            +  +           EA   +H P      E       PA+ RLA +EL+A  + L  +
Sbjct: 179 LLPTEHPLPYGL---GEALVFLHTPPPDAPQESLREGNHPAQLRLAVEELVAHNLTLQGL 235

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q +      ++   ++ ++ L ++PFSPT +Q+  +++I +D+++ + MLR++QGDVG
Sbjct: 236 RAQQQAAGSPQLHGNAQLLEQFLGSLPFSPTAAQQRVMQEITEDIAKPHPMLRLVQGDVG 295

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA  A   A+ +G Q  IMAP  ILA+QH      +     I +  ++G +    
Sbjct: 296 SGKTLVAAAAALQAIASGYQVAIMAPTEILAEQHRLNFMSWFSQLDINIAWLSGRIKGKK 355

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R +ALE I+ G A ++IGTHALFQ  + + +L LVIVDEQHRFGV QRL LT+K+     
Sbjct: 356 RVEALETISSGSAALVIGTHALFQADVMFERLGLVIVDEQHRFGVHQRLSLTEKSGPDVG 415

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL + +  D+D S I E P GR+P++T +I  +R +++++R+    
Sbjct: 416 RPHQLVMTATPIPRTLSMVAYADLDCSVIDELPPGRQPVETALIDNSRREQIVQRVANAC 475

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           + G++ YW+C  +EE      ++       L E     ++ ++HGR+   +K+ VM +FK
Sbjct: 476 AGGRQTYWVCTLVEESDVLQAQAAEATAAELAEALPDLAVGLVHGRLKPTEKDLVMAAFK 535

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY  
Sbjct: 536 AGKIDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTAASHCVLLYQS 595

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS N   RL  ++ + DGF IAE+DL+ R  GE+LG +Q+G+ +F IAQ   H+ LLE 
Sbjct: 596 PLSLNGKQRLQAMRASTDGFYIAEKDLELRGPGEVLGTRQTGLMEFRIAQLPTHNHLLEE 655

Query: 659 ARKDAKHILTQDPDLTSV 676
            +  A +I    PDL   
Sbjct: 656 VQDIAANIQANHPDLAEP 673


>gi|15642705|ref|NP_232338.1| ATP-dependent DNA helicase RecG [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121586640|ref|ZP_01676425.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 2740-80]
 gi|121726729|ref|ZP_01679954.1| ATP-dependent DNA helicase RecG [Vibrio cholerae V52]
 gi|147674684|ref|YP_001218199.1| ATP-dependent DNA helicase RecG [Vibrio cholerae O395]
 gi|153817408|ref|ZP_01970075.1| ATP-dependent DNA helicase RecG [Vibrio cholerae NCTC 8457]
 gi|153821266|ref|ZP_01973933.1| ATP-dependent DNA helicase RecG [Vibrio cholerae B33]
 gi|227082825|ref|YP_002811376.1| ATP-dependent DNA helicase RecG [Vibrio cholerae M66-2]
 gi|229507241|ref|ZP_04396746.1| ATP-dependent DNA helicase RecG [Vibrio cholerae BX 330286]
 gi|229509838|ref|ZP_04399319.1| ATP-dependent DNA helicase RecG [Vibrio cholerae B33]
 gi|229516960|ref|ZP_04406406.1| ATP-dependent DNA helicase RecG [Vibrio cholerae RC9]
 gi|229606747|ref|YP_002877395.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MJ-1236]
 gi|254851248|ref|ZP_05240598.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MO10]
 gi|255744331|ref|ZP_05418283.1| ATP-dependent DNA helicase RecG [Vibrio cholera CIRS 101]
 gi|262158559|ref|ZP_06029674.1| ATP-dependent DNA helicase RecG [Vibrio cholerae INDRE 91/1]
 gi|262170047|ref|ZP_06037736.1| ATP-dependent DNA helicase RecG [Vibrio cholerae RC27]
 gi|298500474|ref|ZP_07010278.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MAK 757]
 gi|9657308|gb|AAF95851.1| ATP-dependent DNA helicase RecG [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549199|gb|EAX59232.1| ATP-dependent DNA helicase RecG [Vibrio cholerae 2740-80]
 gi|121630890|gb|EAX63272.1| ATP-dependent DNA helicase RecG [Vibrio cholerae V52]
 gi|126511994|gb|EAZ74588.1| ATP-dependent DNA helicase RecG [Vibrio cholerae NCTC 8457]
 gi|126521198|gb|EAZ78421.1| ATP-dependent DNA helicase RecG [Vibrio cholerae B33]
 gi|146316567|gb|ABQ21106.1| ATP-dependent DNA helicase RecG [Vibrio cholerae O395]
 gi|227010713|gb|ACP06925.1| ATP-dependent DNA helicase RecG [Vibrio cholerae M66-2]
 gi|227014597|gb|ACP10807.1| ATP-dependent DNA helicase RecG [Vibrio cholerae O395]
 gi|229346023|gb|EEO10995.1| ATP-dependent DNA helicase RecG [Vibrio cholerae RC9]
 gi|229353312|gb|EEO18251.1| ATP-dependent DNA helicase RecG [Vibrio cholerae B33]
 gi|229354746|gb|EEO19667.1| ATP-dependent DNA helicase RecG [Vibrio cholerae BX 330286]
 gi|229369402|gb|ACQ59825.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MJ-1236]
 gi|254846953|gb|EET25367.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MO10]
 gi|255737856|gb|EET93249.1| ATP-dependent DNA helicase RecG [Vibrio cholera CIRS 101]
 gi|262021455|gb|EEY40167.1| ATP-dependent DNA helicase RecG [Vibrio cholerae RC27]
 gi|262029720|gb|EEY48369.1| ATP-dependent DNA helicase RecG [Vibrio cholerae INDRE 91/1]
 gi|297540643|gb|EFH76700.1| ATP-dependent DNA helicase RecG [Vibrio cholerae MAK 757]
          Length = 692

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 261/675 (38%), Positives = 389/675 (57%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFFNF-TAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + ++HP Y F          P +  VY    GL     + +  +AL  L    + E
Sbjct: 121 GNQGLEIIHPDYKFFTPAQTPDVEPNLTPVYPTTEGLRQLTLRNLTDQALVLLEKSAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDQQ--MTLAQALKIIHRPSADIDLRLFEQGRHPAQIRLIMEELLAQNLSMLAI 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+++ + M+R++QGDVG
Sbjct: 239 RSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLAKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 RETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + DE++ER++   
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+H
Sbjct: 539 KNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 APLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLVP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI  + P 
Sbjct: 659 QVQRIARHIHERYPQ 673


>gi|149186682|ref|ZP_01864993.1| DNA helicase [Erythrobacter sp. SD-21]
 gi|148829590|gb|EDL48030.1| DNA helicase [Erythrobacter sp. SD-21]
          Length = 687

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 287/703 (40%), Positives = 419/703 (59%), Gaps = 19/703 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA   T  GVG K    L ++        TR  DL ++ P  F+ R     
Sbjct: 1   MRPDLLNPLFAETETLDGVGPKLKKPLGRLA------LTRIKDLAYHLPERFVTRRAVEN 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFE 119
           + E  E   + +   +++H       R PY++L  D  G  I+L +F R +   K     
Sbjct: 55  VDEAGEGEQIFLKLTVTEHRG-GRSPRAPYRVLAQDAVGNVISLTYFGRASYTAKKQLPV 113

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V GK+++  + + +VHP ++     D    L E VY L  GL+      ++ +AL
Sbjct: 114 GETRWVAGKLERYGDMLQIVHPDHVVEEGGDTLQRLCEPVYRLSEGLTQPRIGGLVDQAL 173

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           ++LP LPEWIE     K  +P+  EA        KA+D      AR+RLAYDELLA  +A
Sbjct: 174 AKLPELPEWIEPTQFDKADWPAWREALKRA---HKAED----KAARDRLAYDELLANGLA 226

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+L+R   +K  G P+  +G    K+  ++PF  T +Q+ +I +I  DM+Q+  MLR+LQ
Sbjct: 227 LMLVRADNRKRKGQPLQGDGSYRGKL--DLPFPLTGAQKRSIGEIEGDMAQEAPMLRLLQ 284

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VAL AM  AVEAG QA ++AP  ILA+QHYE +++  + T   V ++TG  
Sbjct: 285 GDVGAGKTVVALEAMLIAVEAGAQAALLAPTEILARQHYESLRRMAEPTGAEVALLTGRD 344

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKA 418
               R   L  +  G   I++GTHA+FQD + Y  L +V++DEQHRFGV QRL L  +  
Sbjct: 345 KGKAREGTLMGLLDGSIDIVVGTHAIFQDKVAYRNLAMVVIDEQHRFGVGQRLMLASKGR 404

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            APHVL MTATPIPRTL L   G++D+SK+ E P GR+ I TV++  ++I  ++ERL   
Sbjct: 405 RAPHVLAMTATPIPRTLTLAQYGELDVSKLDELPPGRQAIDTVVMGQDKIPTLVERLAAQ 464

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVE-RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
             +G++A+W+CP + E       +  E R+ SL E F   + ++HG+++   K++ M+ F
Sbjct: 465 FEQGRQAFWVCPMVREMDGPEEIAAAEARYASLKERFGDDVVMVHGQLAPEQKDAAMERF 524

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G  +LL+ATTVIEVG+DV +A++++IE AE FGLAQLHQLRGRVGRG E S C+LL+ 
Sbjct: 525 ARGDARLLVATTVIEVGVDVPNATLMVIEQAERFGLAQLHQLRGRVGRGSEKSFCVLLHG 584

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             LS+ +  RL++++ ++DGFL+AEEDLK R  GE+LG +QSG   F +A  E    LL 
Sbjct: 585 ETLSETAQKRLALMRESQDGFLLAEEDLKLRGGGELLGTRQSGDTPFTVASFEQITELLP 644

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            A  DA+ ++ +D  L   R ++ R+LLYL++ +   + +R G
Sbjct: 645 KAHDDARLLMERDGGLEGARAEAARVLLYLFERDFGVKTLRGG 687


>gi|319955243|ref|YP_004166510.1| ATP-dependent DNA helicase recg [Cellulophaga algicola DSM 14237]
 gi|319423903|gb|ADV51012.1| ATP-dependent DNA helicase RecG [Cellulophaga algicola DSM 14237]
          Length = 701

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 246/689 (35%), Positives = 373/689 (54%), Gaps = 23/689 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P++  +GVG   +  L   +         + DL+   P  +ID+    KI+ + +
Sbjct: 4   NFLQTPIAYLKGVGPNRASTLQSEL-----GIQTYQDLINLFPHRYIDKTQYYKINLLQQ 58

Query: 67  ER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               V + G I+   S   +K         D TG++ L++F R  + ++          V
Sbjct: 59  NTSEVQVVGKITHIKSVAQKKGNRLVATFLDDTGKMELVWF-RGQKWIRENLKLNVPYVV 117

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI-EAVYSLPT-----GLSVDLFKKIIVEAL 179
            GK         M HP        +    +  + VY         G++  +  K+I +  
Sbjct: 118 FGKTNFYNGTFSMPHPEMELLVDHEKGLKIYMQPVYPSTEKLSNKGITNRVLSKLIQQIF 177

Query: 180 SRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
             L     E +   ++++    S +EA   IH P+     E  + A+ RL ++EL   Q+
Sbjct: 178 VELNGKFTEALSPKIIEELHLISKSEAMFNIHFPKNQ---ELLAKAQFRLKFEELFYIQL 234

Query: 239 ALLLMRK-QFKKEIGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            L+       K+  G P +  G I       ++PF  T +Q+  +K+I  D+    +M R
Sbjct: 235 QLIAKNMLHKKRIKGFPFDKVGTIFTDFYNNHLPFELTNAQKRVLKEIRSDLGSNAQMNR 294

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VAL+AM  A++ G QA +MAP  ILA QH+  I++  +   I V ++T
Sbjct: 295 LLQGDVGSGKTIVALMAMLLAIDNGFQACLMAPTEILANQHFVGIQELLEGVGITVSLLT 354

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G++ ++ R+   E++  G+  I+IGTHAL +D +QY  L L IVDEQHRFGV QR KL  
Sbjct: 355 GSVKKSARKVIHEQLESGELQILIGTHALLEDKVQYKNLGLAIVDEQHRFGVAQRSKLWH 414

Query: 417 KAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           K T  PHVL+MTATPIPRTL ++  GD+DIS I E P GRKPIKTV    +   +V + +
Sbjct: 415 KNTIPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPIKTVHRYDSNRLKVFQFI 474

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKES 532
           +  + +G++ Y + P I+E +  +++ +++ + S+   F      I+I+HG+M  +DKE 
Sbjct: 475 REEIKKGRQIYVVYPLIQESEVLDYKDLMDGYESIVRDFPQPEYQISIVHGQMKPVDKEY 534

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M  F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG + S C
Sbjct: 535 EMQRFVKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGADQSFC 594

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           IL+    LS  + TRL  +  T DGF IAE DLK R  G+++G +QSGM    IA     
Sbjct: 595 ILMTSFKLSTEAKTRLETMVRTNDGFEIAEVDLKLRGPGDLMGTQQSGMLNLKIADIVRD 654

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           + +L+ AR  A  +L  DP L       I
Sbjct: 655 NDILKTARYYALQLLKDDPTLAKDENAVI 683


>gi|289422304|ref|ZP_06424154.1| ATP-dependent DNA helicase RecG [Peptostreptococcus anaerobius
           653-L]
 gi|289157249|gb|EFD05864.1| ATP-dependent DNA helicase RecG [Peptostreptococcus anaerobius
           653-L]
          Length = 685

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 247/680 (36%), Positives = 384/680 (56%), Gaps = 17/680 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +   +G+G K +  +SK+            D LFY P  F DR    K+ ++ +   V I
Sbjct: 9   IQYIKGIGPKKADKMSKL------GIFTIEDALFYFPRQFEDRSRVKKVFQLEDGEKVAI 62

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
              I + SS +++K    ++ + D T    L+FF +    L+N F  G ++ V G +K  
Sbjct: 63  EVKIERISSRRVRKLSITELFVKDDTKACKLVFFNKG--YLRNTFRVGDEVKVFGTVKIR 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEK 191
              I+ +H   I ++  D N  +I  VY L  G++      +I        + + E++ +
Sbjct: 121 PTGIVEMHNCEIEYDKLDKNTGIIIPVYKLSNGVTNKDVMGMIRNIFEMPDIKIKEYLPQ 180

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
            ++ K +   I  A   +H P K ++      A  RL ++ELL  Q+ L  ++   +   
Sbjct: 181 WIIDKYNLCDINFAIKSMHFPEKKENV---KIAMFRLIFEELLFLQLGLFTIKGDNRIAS 237

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           GI   V  K  + I   + F  T++Q+ A  DIL+DM     M R++QGDVGSGKT VA 
Sbjct: 238 GISQPVH-KDLKAIENGLGFKLTRAQQRAYDDILRDMESGKVMNRLVQGDVGSGKTAVAQ 296

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +A+A  V  G Q   MAP  ILA QH+E    + +NT I VE++TG++ +       ER+
Sbjct: 297 LALANTVLNGYQGAYMAPTEILANQHFESFLDFFKNTPIRVELLTGSVSKKRSEDIRERL 356

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +G+  I+IGTHAL +D +++ KL LVI DEQHRFGV+QR +LT KA +P VL+MTATPI
Sbjct: 357 KNGEIDILIGTHALIEDKVEFNKLGLVITDEQHRFGVRQRGRLTAKALSPDVLVMTATPI 416

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KVVLSEGKKAYWICP 490
           PRTL L   GD+DIS I E P GR+ I T+ +  ++ D   ER  +  +  G + Y +CP
Sbjct: 417 PRTLALILYGDMDISIIDELPPGRQKIDTIAVYEDKRDIYYERNIRKEVEMGHQVYVVCP 476

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +EE +  + +SV E ++ L   F +   I ++HG+M   +K+ VM++FKN    +L++T
Sbjct: 477 LVEESEVLDVKSVTEVYDELQYRFFTDLRIGLLHGKMKPSEKDEVMEAFKNHELDILVST 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG++V +A+I+++ENAE FGLAQLHQLRGRVGRG+  S C L+Y    S     R+
Sbjct: 537 TVIEVGVNVPNATIMVVENAERFGLAQLHQLRGRVGRGKSKSYCCLIYK-SRSDVCKKRM 595

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            +++ T DGF+I+E+DL+ R  G+  G +Q G+P+  +A    H  +L + + +A+ I +
Sbjct: 596 DIMEETNDGFVISEKDLEIRGPGDFFGTRQHGLPELKVANLFKHIKILRMVQLEAREIYS 655

Query: 669 QDPDLTSVRGQSIRILLYLY 688
           +DP L  V  + +R  +   
Sbjct: 656 KDPGLDFVENKGLRQNIEKM 675


>gi|169797572|ref|YP_001715365.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AYE]
 gi|90265357|emb|CAJ77039.1| ATP-dependent DNA helicase [Acinetobacter baumannii]
 gi|169150499|emb|CAM88402.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AYE]
          Length = 616

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 304/578 (52%), Positives = 414/578 (71%)

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           I V+GK++    R  MVHP +I       + PLIE VY L  GLS     + + +AL+R+
Sbjct: 39  IRVSGKLEWFNGRASMVHPDHIAPIDGSDDLPLIEPVYPLTAGLSPKTLARAMRDALTRI 98

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
           P LPEW +K L+Q+++FPS  +A + +H P + +D    SP+R RLAYDE LAGQ+AL L
Sbjct: 99  PDLPEWQDKTLMQRENFPSFTQALHHLHLPEEPEDIAQDSPSRRRLAYDEFLAGQMALAL 158

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R + K+  G P+N  GKI  +IL N+P+S TK QE A+KDI+ D+ Q  RMLR+LQGDV
Sbjct: 159 VRAKTKRLSGRPLNGTGKITAQILANLPYSLTKGQEQAVKDIIGDLKQPERMLRLLQGDV 218

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G+GKT+V L++MA A E+GGQ+ +MAP  +LA+QH+  I    +   +   ++TG     
Sbjct: 219 GAGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGREKGK 278

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R++ L+ +A G  HIIIGTHALFQD ++Y+ L+ VI+DEQHRFGV QRL+LT K TAP 
Sbjct: 279 ERQRILDELADGTIHIIIGTHALFQDKVEYHDLVFVIIDEQHRFGVHQRLQLTAKGTAPD 338

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+MTATPIPRTLVLT+ GD+D+SK+TEKPAGR+PI T I+P  R+ E+++R++  +SEG
Sbjct: 339 MLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPITTAIVPSERLSEIVDRMRKAISEG 398

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K YWICP +EE +     S  ERF S    F   + +IHGRM+  +K+  M +FK G  
Sbjct: 399 QKIYWICPLVEESEHVELTSAEERFQSFLPVFGDKLGLIHGRMTGQEKDDAMLAFKRGDT 458

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           +LLIATTVIEVG+DV DA++I+IE+AE FGL+QLHQLRGRVGRG++ S+C+LLY  PL +
Sbjct: 459 RLLIATTVIEVGVDVPDATVIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKGPLGE 518

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL V++ TEDGF IAEEDLK R EGE+LG +QSG P F +A  E H  LLEIARKD
Sbjct: 519 IAKARLQVMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFKLASMEAHTDLLEIARKD 578

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A+ +L +D DL S RGQ++R+LLY++  +EA + +RAG
Sbjct: 579 ARLMLERDIDLQSERGQALRLLLYIFGRDEAIRLLRAG 616


>gi|258620423|ref|ZP_05715461.1| ATP-dependent DNA helicase RecG [Vibrio mimicus VM573]
 gi|262170362|ref|ZP_06038040.1| ATP-dependent DNA helicase RecG [Vibrio mimicus MB-451]
 gi|258587302|gb|EEW12013.1| ATP-dependent DNA helicase RecG [Vibrio mimicus VM573]
 gi|261891438|gb|EEY37424.1| ATP-dependent DNA helicase RecG [Vibrio mimicus MB-451]
          Length = 692

 Score =  578 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 260/675 (38%), Positives = 389/675 (57%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKVS------LHTVQDLLFHLPLRYEDRTRVYPIVQVHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFFNF-TAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + ++HP Y F          P +  VY    GL     + +  +AL+ L    + E
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDQQ--MTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAI 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+ + + M+R++QGDVG
Sbjct: 239 RSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 RETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D++ S I E P GR PI+TV IP  + D+++ER++   
Sbjct: 419 YPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERIRHAC 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +F
Sbjct: 479 LNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN    LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+H
Sbjct: 539 KNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 APLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLIP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI  + P 
Sbjct: 659 QVQRIARHIHERYPQ 673


>gi|300725972|ref|ZP_07059433.1| ATP-dependent DNA helicase RecG [Prevotella bryantii B14]
 gi|299776756|gb|EFI73305.1| ATP-dependent DNA helicase RecG [Prevotella bryantii B14]
          Length = 700

 Score =  578 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 241/684 (35%), Positives = 391/684 (57%), Gaps = 23/684 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +    GVG K    LSK +   + N     DLL Y+P  ++DR     I+E++ + 
Sbjct: 5   LDQDIMYLSGVGPKRKEILSKELGINSYN-----DLLEYYPYKYVDRSRIYTINELTSDM 59

Query: 69  I-VTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             V I G I     F++  +++      +DGTG   +++F R T+ +   +   ++  + 
Sbjct: 60  PFVQIKGKILSFDEFEMGPRKKRIVAHFSDGTGVCDIVWF-RATQFVYKNYKVQQEYIIF 118

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALSR 181
           GK      R    HP     +  +++   ++  Y         GL+    +K+    + +
Sbjct: 119 GKPTLFNGRYQFAHPDIDDASKLELSQMGMQPYYITTERMKKMGLTSRSMEKLTKTLIEK 178

Query: 182 LPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           L    +PE +   L  +    S  +AF+ IH P+ A +   T  ARERL ++EL   Q+ 
Sbjct: 179 LSQTPIPETLPDSLTHRLHLISRQQAFHWIHYPQNAHE---TQQARERLKFEELFYVQLN 235

Query: 240 LL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +L  +  + K   G      G+I      +N+PF  T +Q+  IK+I +DM+   +M R+
Sbjct: 236 ILRYVSDRRKNYRGYIFGHIGQIFNDFYSQNLPFPLTNAQKRVIKEIRRDMNSGKQMNRL 295

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA+QH + IK +     I VE++TG
Sbjct: 296 LQGDVGSGKTLVALMSMLIALDNGYQACMMAPTEILAEQHLQTIKDFLHGMNIRVELLTG 355

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-Q 416
            +    R++ LE +A G+  I++GTHA+ +D +Q+ +L   ++DEQHRFGV QR KL  +
Sbjct: 356 IVKGKKRQQILEDLASGKIQILVGTHAVIEDHVQFARLGYAVIDEQHRFGVAQRAKLWGK 415

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
            +  PH+L+MTATPIPRTL +T  GD+D+S I E P GRKP++T+    +++  +   ++
Sbjct: 416 SSFPPHILVMTATPIPRTLAMTIYGDLDVSIIDELPPGRKPVQTIHKYDSQMTSLYSGIR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             + EG++ Y + P I+E ++S+ +++ E + +L E F    ++ +HG+M   +KE  M 
Sbjct: 476 QQIHEGRQVYIVFPLIKESEKSDLKNLEEGYEALREVFPEFRLSKVHGKMKPAEKEEEMQ 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F  G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+
Sbjct: 536 KFVKGDTQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILV 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDS 654
            +  LSK +  R+ ++ +T DGF IAE DLK R  G++ G +QSG+     IA       
Sbjct: 596 TNQKLSKETRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIANIAQDGQ 655

Query: 655 LLEIARKDAKHILTQDPDLTSVRG 678
           ++++AR +A+ I+  DP+   +  
Sbjct: 656 IIQLARDEAQKIIDNDPNCEKIEN 679


>gi|332884646|gb|EGK04903.1| ATP-dependent DNA helicase RecG [Dysgonomonas mossii DSM 22836]
          Length = 698

 Score =  578 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 236/683 (34%), Positives = 369/683 (54%), Gaps = 21/683 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           +     +    GVG K +  L+K I     N     DLL+Y P  +IDR     I EI  
Sbjct: 3   DSFQTDIKYLAGVGPKKAEILNKEI-----NVFSVEDLLYYFPYKYIDRSRIYFIHEIDG 57

Query: 67  ER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               + I G I+   +F   +++       DGTG I L++F +  + + + +       V
Sbjct: 58  NMPYIQIRGRITAFETFGEGRKKRLVAHFTDGTGFIDLVWF-QGAKFITDKYKVNLPYIV 116

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEALS 180
            GK     ++  + HP    + S++     +   Y+         L+    +KI+  A S
Sbjct: 117 FGKPTLFGDKFNIPHPDIDPYISEEERPTGLMPYYNTTEKMKNHYLNSKAIQKIMAAAFS 176

Query: 181 RL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            +   LPE +   ++ +     +  A   IH P            + RL ++EL   Q+ 
Sbjct: 177 SVVRSLPETLPDSIINEARLMGLKSAMRNIHFPESTALLREA---QYRLKFEELFYIQLN 233

Query: 240 LLLMRKQFKKE-IGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +L      K +  G   +  G    +    N+PF  T +Q+  IK+I QDM+   +M R+
Sbjct: 234 ILRYTADRKSKLKGFVFSKVGDYLNRFYDENLPFPLTNAQKRIIKEIRQDMATGEQMNRL 293

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL+ M  A++   QA +MAP  ILA QHY+ I +      + VE++TG
Sbjct: 294 LQGDVGSGKTLVALMLMLIALDNNFQAALMAPTEILATQHYQTITEALAGLDVNVELLTG 353

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-Q 416
           +  ++ R +    +  G   I+IGTHAL +D++Q+  L LV++DEQHRFGV QR KL  +
Sbjct: 354 STKKSDRERIHNALLTGDLQILIGTHALIEDTVQFSNLGLVVIDEQHRFGVAQRAKLWSK 413

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+     +   + E ++
Sbjct: 414 NVNPPHILVMTATPIPRTLAMTVYGDLDVSVIDELPPGRKPIQTIHQYDKKRGALYESIR 473

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             L EG++ Y + P IEE ++ + +++ E F  + E F   ++  +HG+M   +K++ M 
Sbjct: 474 RQLQEGRQVYIVYPLIEESEKLDLKNLEEGFEHIKEIFPDYTVCKVHGKMKPKEKDAEMQ 533

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F     ++++ATTVIEVG++V +AS+++IE+A+ FGL+QLHQLRGRVGRG + S CIL+
Sbjct: 534 RFVTNEAQIMVATTVIEVGVNVPNASVMVIESAQRFGLSQLHQLRGRVGRGADQSYCILV 593

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDS 654
               LS ++  R+ ++  + DGF IAE DLK R  G++ G +QSG+P    IA       
Sbjct: 594 TPYELSADTRKRIDIMVESNDGFEIAEADLKLRGPGDLEGTQQSGIPFNLRIANLVRDGE 653

Query: 655 LLEIARKDAKHILTQDPDLTSVR 677
           +L+ AR+ A+ +L +DP +    
Sbjct: 654 ILQYAREVAQKVLDEDPQMEKPE 676


>gi|262370592|ref|ZP_06063917.1| ATP-dependent DNA helicase RecG [Acinetobacter johnsonii SH046]
 gi|262314392|gb|EEY95434.1| ATP-dependent DNA helicase RecG [Acinetobacter johnsonii SH046]
          Length = 681

 Score =  578 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 262/671 (39%), Positives = 389/671 (57%), Gaps = 21/671 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           A +   +GVG   +  L K+      N     DLLF+ P  + DR     +++++  R  
Sbjct: 2   AAVHQLQGVGAASAALLEKL------NLFTTDDLLFHLPRDYEDRSTIIPMNQLTVGRSY 55

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G I     F   KR+   I L D  G++TL  FY   + L +    G ++ + G+++
Sbjct: 56  LLEGTIQGV-DFPPGKRKSMAIGLQDDFGKVTLR-FYHIYKGLTDRAKVGNRLRIFGEVR 113

Query: 131 KLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
                + M HP          +    + A+Y    GL+   F++ I +AL++    LPE 
Sbjct: 114 VGARGLEMYHPEIQLITEHTPLPQTQLTAIYPSTEGLTQPKFREYIKQALAKHSDDLPEL 173

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244
           +              +A + IH+P    +     + + PA++RL ++EL+A Q++LL  R
Sbjct: 174 LPAKFTNGYVL---KQALDYIHHPPVDANMLQLSQGSHPAQQRLIFEELVAHQVSLLSRR 230

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              ++     I+   + A+++L ++PF  T +Q+   K+I+QD+     MLR++QGDVG+
Sbjct: 231 AYIQQIEAPRISASRQFAKQLLSSLPFEMTNAQKRVSKEIVQDLKLNKPMLRLVQGDVGA 290

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA +A   A+E G Q  +MAP  ILA+QHY   KK+ +   + V  ++G      R
Sbjct: 291 GKTLVAGVAACHALEEGWQVALMAPTEILAEQHYLNFKKWFEPLGLSVSWLSGKQKGKAR 350

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT---QKATAP 421
             A + I  G AH+++GTHALFQD++++ KL LVI+DEQHRFGV QRL L     +   P
Sbjct: 351 ATAEQAIVDGTAHLVVGTHALFQDNVRFAKLGLVIIDEQHRFGVDQRLALRNKGAQNMTP 410

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     E
Sbjct: 411 HQLVMTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVLQRIASNCLE 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           GK+AYW+C  +EE +  + ++    +  + E F   +I ++HG+M   +K++VM  FK  
Sbjct: 471 GKQAYWVCTLVEESETLDAQAAEATYLEIKERFPELNIGLVHGKMKADEKQAVMQQFKAN 530

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG + S C LLY  PL
Sbjct: 531 ELQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCALLYKSPL 590

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RL V++ T DGFLIAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A 
Sbjct: 591 SQNGQERLRVMRETNDGFLIAEKDLEIRGPGELLGTKQTGDMGFRVAKLERDDHLLNQAH 650

Query: 661 KDAKHILTQDP 671
             A  IL   P
Sbjct: 651 YVAAQILKDYP 661


>gi|304319852|ref|YP_003853495.1| ATP-dependent DNA helicase [Parvularcula bermudensis HTCC2503]
 gi|303298755|gb|ADM08354.1| ATP-dependent DNA helicase [Parvularcula bermudensis HTCC2503]
          Length = 701

 Score =  578 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 289/708 (40%), Positives = 414/708 (58%), Gaps = 15/708 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ LN  FA L++  GVG K +  L K+         R IDLL   P+  IDR YRPK
Sbjct: 1   MRPAELNRYFADLTSLPGVGPKTAALLQKVAG------PRIIDLLLTGPTGLIDRSYRPK 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           + E    R+ T+T  ++ H+     +R  PY+IL  D TG +TL+FF  K E L+  +  
Sbjct: 55  VGEAILGRVATVTVTVTAHTPPPTGRRLIPYRILTADDTGYLTLVFFRAKREWLETRYPV 114

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G  +TV+G I        M HP Y+     D   P +E VY L  GL++  +++ +  AL
Sbjct: 115 GTSLTVSGTIDDYGGARQMTHPDYMLRPDHDETLPEVEPVYPLTAGLTLPTYRRAVAAAL 174

Query: 180 SRLPVLPEWIEKDLLQKKS---FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            R+  L EW     L+       P  A+A   +H P+  +D   +SPAR RLA DELL+ 
Sbjct: 175 RRVAPLAEW-RAPPLEGDGAPPLPDWADAVRTLHAPQSERDLSPSSPARRRLAADELLSN 233

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q+AL L+R + ++  G  +  +  + +     +PF  T +Q+ A+ +I+ DM    RM+R
Sbjct: 234 QLALSLIRHRRQQIAGRALPGDPTLMEGGRAALPFRLTAAQDQALAEIVADMQSPARMVR 293

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VA  A+  A+ +G Q  +MAP  ILA QH E ++       + +  + 
Sbjct: 294 LLQGDVGSGKTMVAFFALLQAIGSGVQGALMAPTEILALQHEETLRPLCDRLGLSLVTLL 353

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G      R      +A G   ++IGTHAL  + + +  L L++VDEQHRFGV QRL L +
Sbjct: 354 GRDKGPERAAKRRGVAEGYVPLVIGTHALLSEDVVFRDLGLIVVDEQHRFGVTQRLSLQE 413

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K     +L+MTATPIPR+L LT+ GD+ +S+I EKP GRKP+ T  +P  R+DEV+  + 
Sbjct: 414 KGRRADILVMTATPIPRSLALTTYGDMSVSQIREKPPGRKPVATRALPTTRLDEVMSAIG 473

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              + G + YW+CP +EE  +    SV ER  SL +     IA +HGRMS  +K++V+  
Sbjct: 474 RAAARGDQIYWVCPLVEENDQLALTSVTERAASLADATGLDIAAVHGRMSPQEKDAVVAR 533

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   +L+ATTVIEVG++  +A+I++IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY
Sbjct: 534 FARGDADVLVATTVIEVGVNTPNATIMVIEHAERFGLAQLHQLRGRVGRGDKPSSCLLLY 593

Query: 597 H----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
                  L K +  RL+ L+ TEDGF+IAE DL  R  G+ LG  QSG  +F       H
Sbjct: 594 STGDGEQLGKTAKARLNTLRETEDGFVIAEADLALRGPGDALGTAQSGQARFRFGDLSAH 653

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             +LE A ++A  I+  DP L + RG ++R LLYL+  +EA + +R+G
Sbjct: 654 KDVLEWAHQEAADIVRHDPYLDTKRGAALRTLLYLFGQDEAARRLRSG 701


>gi|325955344|ref|YP_004239004.1| ATP-dependent DNA helicase RecG [Weeksella virosa DSM 16922]
 gi|323437962|gb|ADX68426.1| ATP-dependent DNA helicase RecG [Weeksella virosa DSM 16922]
          Length = 701

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 233/695 (33%), Positives = 377/695 (54%), Gaps = 21/695 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-I 69
            P+   +GVG + +  L K +        R+ DLL + P  ++DR    KI E+      
Sbjct: 8   TPIEYLKGVGPERAKLLQKELQ-----IFRYEDLLNHFPFRYVDRSRFYKIKELVPTMAE 62

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKN-VFFEGRKITVTGK 128
           V + G +    +    K++       D TG++ L++F      ++       + I + GK
Sbjct: 63  VQLIGKMVSLETITSGKKKRLVAKFIDDTGQMELVWFKFTKWQVEKFQKELHQPILIYGK 122

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALSRLP 183
                +   MVHP      +       +  VY         G++  + +KII++      
Sbjct: 123 PNLFNSVFSMVHPEIEDAENAKTMPLGLFPVYPSTELLAKKGITNRMMQKIILQLFQESI 182

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           ++ E +   L+ +    S A+A+  IH P+ A++         RL ++EL   Q+++ + 
Sbjct: 183 MIEENLSTSLVDQLKLISRAKAYAQIHFPKNAEELRQAEF---RLKFEELFFFQLSMFVK 239

Query: 244 RKQFKK-EIGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +   ++          G+         IPF  T +Q+  +K+I +D+ Q  +M R+LQGD
Sbjct: 240 KIGHQQTNKSQAFPRVGEYFNTFYNNYIPFELTNAQKRVVKEIYRDLRQHKQMNRLLQGD 299

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VAL++M  A++   QA ++AP  ILAQQHY+ + +Y  +  + V +ITG+  +
Sbjct: 300 VGSGKTMVALLSMLLAIDNNFQATLIAPTEILAQQHYQSVVEYLGDLDVKVALITGSTTK 359

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL-KLTQKATA 420
           + R+   E +  G+ +I+IGTHA+ +D++Q+  L L I+DEQHRFGV QR     +    
Sbjct: 360 SQRQPIHEGLLSGEINILIGTHAILEDTVQFNNLGLAIIDEQHRFGVAQRAKFWRKAKQP 419

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH+L+MTATPIPRTL ++  GD+DIS I E P GRKPI+T+        ++   LK  + 
Sbjct: 420 PHILVMTATPIPRTLAMSLYGDLDISVIDELPKGRKPIQTIHKTDAHRLQLFHFLKKEID 479

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSF 537
           +G++ Y + P IEE K+   + +++ + S+   F     ++ I+HGR    +K+  M  F
Sbjct: 480 KGRQVYIVYPLIEESKKLELKDLMDGYESITREFPLPKYAVGIVHGRQKPAEKDYEMQRF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G   +L+ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG E S CIL+ H
Sbjct: 540 IKGETHILVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGAEQSYCILMTH 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             L++ SY R+S +  T DGF IAE DL+ R  G+++G +QSG+  F +A       L+E
Sbjct: 600 GQLNETSYQRISTMCQTNDGFQIAEVDLQLRGPGDLMGTQQSGVLDFKLASLTKDRQLIE 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            +R+ A  +L +DP L       I+     +  ++
Sbjct: 660 WSRQAADRLLKEDPRLEKSENLPIKKYFLAHHKDK 694


>gi|15642978|ref|NP_228020.1| ATP-dependent DNA helicase RecG [Thermotoga maritima MSB8]
 gi|16975404|pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
 gi|4980702|gb|AAD35297.1|AE001705_8 ATP-dependent DNA helicase [Thermotoga maritima MSB8]
          Length = 780

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 236/663 (35%), Positives = 362/663 (54%), Gaps = 17/663 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG      L K+            DLL + P  + DR    K++++    
Sbjct: 113 LSTDIQYAKGVGPNRKKKLKKL------GIETLRDLLEFFPRDYEDRRKIFKLNDLLPGE 166

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE--GRKITVT 126
            VT  G I    + + Q       +L+DG   + L +F +  + L+    +  G+++ VT
Sbjct: 167 KVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQ--DYLQTYLKQLTGKEVFVT 224

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VL 185
           G +K           +      +      I  +Y L +G+S    +KI  E +  L   L
Sbjct: 225 GTVKSNAYTGQYEIHNAEVTPKEGEYVRRILPIYRLTSGISQKQMRKIFEENIPSLCCSL 284

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E + + +L+K+    + +A+  +H P+     E    ARERLAY+EL   Q+A   +RK
Sbjct: 285 KETLPERILEKRKLLGVKDAYYGMHFPKTFYHLE---KARERLAYEELFVLQLAFQKIRK 341

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + +K  GIP  +EGK+A++ ++++PF  T +Q+ A ++I  DM  +  M R+LQGDVGSG
Sbjct: 342 EREKHGGIPKKIEGKLAEEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSG 401

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +A+    EAG Q   M P  ILA QHY    +      I V ++ G    + + 
Sbjct: 402 KTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKE 461

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           K    + +GQ  ++IGTHAL Q+ + +  L LVI+DEQHRFGV+QR  L  K      L+
Sbjct: 462 KIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQREALMNKGKMVDTLV 521

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPR++ L   GD+D++ I E P GRK ++T+++P++R++EV E ++  +  G +A
Sbjct: 522 MSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQA 581

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           + + P IEE  + N +S VE +  L +       + ++HGR+S  +K+ VM  F  G   
Sbjct: 582 FIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD 641

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVGIDV  A++++IEN E FGLAQLHQLRGRVGRG + + C L+    + + 
Sbjct: 642 ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVG-DVGEE 700

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL       DGF IAE DLK R  GE  G+KQ G+  F +A       LLE AR+D 
Sbjct: 701 AMERLRFFTLNTDGFKIAEYDLKTRGPGEFFGVKQHGLSGFKVADLYRDLKLLEWAREDV 760

Query: 664 KHI 666
           + I
Sbjct: 761 QEI 763


>gi|85060202|ref|YP_455904.1| ATP-dependent DNA helicase RecG [Sodalis glossinidius str.
           'morsitans']
 gi|84780722|dbj|BAE75499.1| ATP-dependent DNA helicase [Sodalis glossinidius str. 'morsitans']
          Length = 694

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 247/687 (35%), Positives = 381/687 (55%), Gaps = 26/687 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG       +++            DLL + P+ + DR     I E      VT
Sbjct: 11  PLNTLSGVGPSLVSKFARL------GLENLQDLLLHLPARYEDRTKLYPIGEALPGMTVT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +  +S     ++      L D +G +TL FF+    M KN    G+ +T  G+I++
Sbjct: 65  VQGEVL-NSDISFGRKCMLTCRLRDDSGVLTLRFFHFNAAM-KNSLSPGQWVTAYGEIRR 122

Query: 132 LKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            ++   ++HP Y   N   +      +  VY    G+     +  + +AL  L + P  E
Sbjct: 123 GQHGGEIIHPEYHVINERSEVTLAAALTPVYPTTEGVRQATLRNAVDQALKLLDITPVAE 182

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            +  +L       S+ +A  ++H P  A   +       PA+ RL  +ELLA  +++L +
Sbjct: 183 LLPPELSD--GLMSLPDALRMLHRPPPAISLDDLVLGRHPAQRRLILEELLAHNLSMLAI 240

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   +K+  +P+  +  ++Q+ L  +PF+PT +Q   + +I QD+++   M+R++QGDVG
Sbjct: 241 RAGVQKDRALPLRADSLLSQRFLAALPFAPTGAQRRVVAEINQDLARDVPMMRLVQGDVG 300

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTL A +A   A+  G Q  +MAP  +LA+QH +  + +     I V  + G      
Sbjct: 301 SGKTLAAALAALCAISDGRQVALMAPTELLAEQHAQNFRDWFAPLGIEVGWLAGKQKGKA 360

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R+   E I+ G+  +I+GTHA+FQ+ +++  L LVI+DEQHRFGV QRL L +    +  
Sbjct: 361 RQAQQEAISDGRVSMIVGTHAIFQEQVRFAGLALVIIDEQHRFGVHQRLALWEKGLVQGF 420

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++   
Sbjct: 421 HPHQLIMTATPIPRTLAMTTYADLDTSVIDELPPGRTPVTTVAIPDTRRAEIIQRVRQAC 480

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L E ++AYW+C  IEE      ++    +  L        + ++HGRM  ++K+ +M +F
Sbjct: 481 LQEQRQAYWVCTLIEESDLLEAQAAEATWQELKSSLPELRVGLVHGRMKALEKQQLMQAF 540

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 541 KAGDVQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 600

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK + +RL VL+N+ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A       ++ 
Sbjct: 601 SPLSKTAQSRLQVLRNSNDGFVIAQRDLEIRGPGELLGTRQTGNAEFRVANLLRDQGMIP 660

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRIL 684
             ++ A+HI    PD  + R    R +
Sbjct: 661 EVQRLARHIHQHHPD--AARALIERWM 685


>gi|300775765|ref|ZP_07085626.1| DNA helicase RecG [Chryseobacterium gleum ATCC 35910]
 gi|300505792|gb|EFK36929.1| DNA helicase RecG [Chryseobacterium gleum ATCC 35910]
          Length = 695

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 229/686 (33%), Positives = 377/686 (54%), Gaps = 22/686 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE- 67
           L   +   +G+G + +  +           +   D+L ++P  ++D+    KIS++ EE 
Sbjct: 3   LETSIEYVKGIGPERAKLIK-----NVLGLSTVEDMLNFYPIRYLDKSKIYKISQLQEES 57

Query: 68  -RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            + + + G I+Q    Q  K +      ND TG + L++F + ++ LK      +++ + 
Sbjct: 58  SQEIQLKGKITQVQEIQTGKTKRLSAKFNDDTGSMDLVWF-QYSKWLKEQLPVNKEVYIF 116

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALSR 181
           GKI     +  M HP       ++ +   ++ +Y         GL+   F+  +      
Sbjct: 117 GKINVFNRQFSMPHPEIEAEEKKEGDT-RLKPIYPSSEKLTKRGLNQRFFQNALRNICKE 175

Query: 182 LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           +P ++ E     L++   F S   AF  +H P   KD E  + A  RL ++E    Q+  
Sbjct: 176 IPGLIEENFPDYLMKTFKFMSRQHAFLNVHFP---KDMEHFNKADYRLKFEESFFFQLGY 232

Query: 241 LLMRKQFKKEIG-IPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
            L +   K +    P  + G         ++PF  T +Q+  +K+I  DM +  +M R+L
Sbjct: 233 GLKKLHHKTQSHGNPFPIIGDHFNDFYENHLPFDLTNAQKRVLKEIRMDMKRSIQMNRLL 292

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL+ M  A++ G Q+ +MAP  ILAQQHY  IK+  + T I + ++TG+
Sbjct: 293 QGDVGSGKTMVALLTMLIAMDNGFQSCLMAPTEILAQQHYNGIKELLEKTGINIRLLTGS 352

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QK 417
              + RR   E + +G   I++GTHA+ +D +++  L L I+DEQHRFGV QR KL  + 
Sbjct: 353 TKASERRVIHEELENGTLSILVGTHAVLEDKVKFKNLGLAIIDEQHRFGVAQRAKLWAKN 412

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH+L+MTATPIPRTL ++   D+D+S I E P GRKPI T          V    K 
Sbjct: 413 KIPPHILIMTATPIPRTLAMSFYSDLDVSVIDEMPVGRKPIITAHRREKDRLYVYNFCKD 472

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            + +G++ Y++ P IEE +  ++++++E    + ++F+  ++ ++HG+M   +K++ M  
Sbjct: 473 EIKKGRQVYFVYPLIEESETLDYKNLMEGLEHVMDYFSEYNVTMLHGKMKPDEKDAAMAY 532

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G  ++++ATTVIEVG++V +AS+++IE++E FGL+QLHQLRGRVGRG E S CIL+ 
Sbjct: 533 FASGKAEIMVATTVIEVGVNVPNASVMVIESSERFGLSQLHQLRGRVGRGAEQSYCILMT 592

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
              LSK S TR+  +  T DGF I+E D++ R  G+ILG +QSG+  F         +++
Sbjct: 593 SDKLSKESRTRIRTMTETNDGFKISEVDMQLRGPGDILGTQQSGVVDFKRLDLINDSAII 652

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIR 682
           +  +   + IL  DP L+    Q I+
Sbjct: 653 KTTKNTVEKILEADPMLSRPDNQIIK 678


>gi|325690294|gb|EGD32298.1| DNA helicase RecG [Streptococcus sanguinis SK115]
          Length = 671

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 240/688 (34%), Positives = 389/688 (56%), Gaps = 27/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D      + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL------GLETLQDLLLYFPFRYEDF-KSKNVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    +    +D     ++ VY L  G+S     K+I  A  +    +L 
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S  EA   +H P+   D+     A  R+ ++EL   Q+ L +++++
Sbjct: 169 ENLPQLLLERYQLVSRVEAVRAMHFPKDLADY---KQALRRVKFEELFYFQMQLQVLKRE 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVGSG
Sbjct: 226 SKAVSNGLKIDWQSDAVAEKKKSLPFELTSAQERSLAEILQDLRSPGHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A RR
Sbjct: 286 KTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I +GQ  +I+GTHAL Q++++Y+ L LVI+DEQHRFGV+QR  L +K   P VL+
Sbjct: 344 ETLAAIENGQVDMIVGTHALIQEAVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ LK  L +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGAQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G   
Sbjct: 464 YFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGRTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYN 691
             I T DP+  +     + I L+L + +
Sbjct: 643 SQI-TADPNWRTDPSWHL-IALHLDKRD 668


>gi|218438140|ref|YP_002376469.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 7424]
 gi|218170868|gb|ACK69601.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 7424]
          Length = 818

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 249/681 (36%), Positives = 389/681 (57%), Gaps = 29/681 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PLS    VG + S  L+++            D+LFY+P   ID   +  I+ +    
Sbjct: 121 LDQPLSALVEVGYRKSDLLARL------GLKTVQDILFYYPRDHIDYARQVSITNLVAGE 174

Query: 69  IVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEM--------LKNVF 117
            VTI G + + + F   K +   I   L+ D TG+I L  F+  T           K ++
Sbjct: 175 TVTIVGTVKRCNCFTSPKNKQLSIFELLIKDSTGQIKLNRFFAGTRFTNRGWQERQKRLY 234

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFK 172
             G  +  +G +K+ K    + +P     +S     + +    +  VY L  G+  DL +
Sbjct: 235 PVGSVVAASGLVKQNKYGFTLENPEIEVLDSLGSHIESLKIGRVLPVYPLTEGVPADLVR 294

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           K ++EAL  L  L + +  DL  +     + EA   IH P      +  + AR RL +DE
Sbjct: 295 KAVIEALGALHQLKDPLPVDLRNEYGLIKLKEAIANIHFPENP---DILTHARRRLVFDE 351

Query: 233 LLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
               Q+  L  R+ Q + +     N  G+  +K    +PF  T +QE  I +IL+D+   
Sbjct: 352 FFFLQLGFLQRRQEQKQTQKSASFNPRGEFIEKFNHLLPFPLTNAQERVIGEILEDLKSF 411

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVGSGKT+V + A+ AA+++G QA +MAP  +LA+QHY  +  +     + 
Sbjct: 412 TPMNRLVQGDVGSGKTIVGVFAILAAIQSGYQAALMAPTEVLAEQHYRKLVGWFNLLHLP 471

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++TG+   A RR+   ++ +G+  +++GTHAL QD + +  L LV++DEQHRFGVQQR
Sbjct: 472 VELLTGSTKVAKRREIHSQLENGELPLLVGTHALIQDPVNFRNLGLVVIDEQHRFGVQQR 531

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            +L  K  APHVL MTATPIPRTL LT  GD+D+S+I E P GR+PI+T ++      + 
Sbjct: 532 ARLLAKGQAPHVLTMTATPIPRTLALTIHGDLDVSQIDELPPGRQPIQTTVLTGKERTQA 591

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE--HFTSSIAIIHGRMSDID 529
            E ++  +++G++AY I P IEE ++ + R+ VE +  L E       I ++HGRMS I+
Sbjct: 592 YELIRREVAQGRQAYVIFPLIEESEKLDVRAAVEDYKRLSETIFPDFQIGLLHGRMSSIE 651

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+ V+++F++   +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   
Sbjct: 652 KDEVLNAFRDNQTQIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGSHK 711

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+     +  S  RL VL+ ++DGF I+E DL+ R  GE+LG +Q+G+P F +A  
Sbjct: 712 SYCLLM-SSSRNPESNQRLKVLEQSQDGFFISEMDLRFRGPGEVLGTRQTGLPDFALASL 770

Query: 650 ELHDSLLEIARKDAKHILTQD 670
                +L +AR+ A+ ++  D
Sbjct: 771 VEDQEVLTVAREAAEKVMMAD 791


>gi|288553101|ref|YP_003425036.1| ATP-dependent DNA helicase RecG [Bacillus pseudofirmus OF4]
 gi|288544261|gb|ADC48144.1| ATP-dependent DNA helicase RecG [Bacillus pseudofirmus OF4]
          Length = 682

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 236/662 (35%), Positives = 377/662 (56%), Gaps = 19/662 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG++ +  ++        N     DL+ + P  + D      + +   +  VT
Sbjct: 8   PVTEVKGVGEETAKQMA------GMNVHTVQDLIEHFPFRYEDY-QLKDLQDTKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    S +   ++  ++ +     +I +   +     LK  F  G+++TVTGK  +
Sbjct: 61  VVGVVQSEPSIRYYGKKKNRLSVRLLVNQILITVTFFNRAFLKKYFQIGQEVTVTGKWDQ 120

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIE 190
            +  I         +  +      I  VYS+   L+    KK I +A+ +    +PE + 
Sbjct: 121 HRMTIAGS----ECYPGRVEKEQTIVPVYSVSGKLTSKSLKKYIYQAMQQYGEDIPEVLP 176

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFKK 249
           +  L+K   P+  EA   +H P K    E T  AR R+ Y+E L  Q+ +   RK   ++
Sbjct: 177 ESFLEKYKLPTKREAIYRLHYPSKD---EATKHARRRMVYEEFLFFQLKMQAYRKINREQ 233

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
            +G+P+ ++    +  +  +PF  T +Q+  +KDIL D+    RM R+LQGDVGSGKT+V
Sbjct: 234 SVGVPLMLDRNKVRDFVSGLPFPLTGAQKRVVKDILHDIESDYRMNRLLQGDVGSGKTIV 293

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A + M A V+AG QA +M P  ILA+QH   +K   +   I VE+++G++    RR+ LE
Sbjct: 294 AAVCMYAVVQAGKQAALMVPTEILAEQHVSSLKPLLEPFGIEVELLSGSVKGKKRRERLE 353

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           R+  G+ HI +GTHAL Q+ + ++ L LVI DEQHRFGV+QR  L  K   P VL MTAT
Sbjct: 354 RLESGEMHIAVGTHALIQEDVIFHDLGLVITDEQHRFGVEQRRVLRDKGEHPDVLFMTAT 413

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL ++  GD+D+S I E PAGRK I+T     + +D V+  ++  L  G++AY IC
Sbjct: 414 PIPRTLAISVFGDMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFIEKELQAGRQAYVIC 473

Query: 490 PQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           P IEE +  + ++ ++    L +H+     + ++HGR+   +K+ VM++F   + ++L++
Sbjct: 474 PLIEESESLDVQNAIDVHAILQQHYGGKFKVGLMHGRLHPKEKDEVMEAFSENSTQILVS 533

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRGE  S CILL  P  S+    R
Sbjct: 534 TTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGEAQSYCILLADPK-SEVGKER 592

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           + ++  T DGF+++E DL+ R  G+  G KQSG+P F +A        LE+AR+DA  ++
Sbjct: 593 MRIMTETNDGFVLSERDLELRGPGDFFGSKQSGLPNFKVADVVHDYRALEVARQDAAELV 652

Query: 668 TQ 669
            +
Sbjct: 653 NK 654


>gi|330827858|ref|YP_004390810.1| ATP-dependent DNA helicase RecG [Aeromonas veronii B565]
 gi|328802994|gb|AEB48193.1| ATP-dependent DNA helicase RecG [Aeromonas veronii B565]
          Length = 689

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 258/695 (37%), Positives = 383/695 (55%), Gaps = 25/695 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL + +GVG K    L ++            DLLF+ P  + DR     I ++       
Sbjct: 7   PLDSLKGVGSKMQEKLERL------GLATVQDLLFHLPLRYEDRTQVWPIGDLPPGLHGA 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I       + +RR     ++DGTG +TL FF   T   KN    GR I   G+++ 
Sbjct: 61  VEGEIQDTQLV-MGRRRMMVCRISDGTGTLTLRFFNF-TAAQKNSLAAGRLIRCFGEVRP 118

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
            K  + M HP Y     +        +  VY    GL     + +  +AL++L +  + E
Sbjct: 119 GKYGLEMAHPEYKLLGEEQAGQTEEALTPVYPTTEGLRQLTLRNLTDQALAQLDLYGVEE 178

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L   +    +A A  ++H P  +           PA++RL  +ELLA  +++L +
Sbjct: 179 LLPAGLYPHQ--IELAAALKLLHRPPPSVALPLLESGQHPAQQRLVLEELLAHNLSVLKV 236

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q + ++   +    ++ +++L  +PF PT +Q   + +I +D+ Q + M+R++QGDVG
Sbjct: 237 RAQAQTQLARALKPAPELVEQLLGALPFKPTGAQSRVVTEISKDLQQSHPMMRLVQGDVG 296

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+  G Q  +MAP  +LA+QH     K+ +   I V  + G      
Sbjct: 297 SGKTLVAALAALQAIGNGCQVGLMAPTELLAEQHAINFAKWLEPLGIGVGWLAGKQKGKA 356

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R ++L  I  G   +++GTHA+FQ+ + + +L LVI+DEQHRFGV QRL L +K      
Sbjct: 357 REESLAAIKDGSVKMVVGTHAIFQEQVVFQRLALVIIDEQHRFGVHQRLALREKGEREGV 416

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T+  D+D S I E P GR PI TV +P +R  +VIER+K+  
Sbjct: 417 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPITTVALPDSRRGDVIERVKLAC 476

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EGK+AYW+C  IEE +    ++  +    L        I ++HGRM  ++K+ VM+ FK
Sbjct: 477 TEGKQAYWVCTLIEESEVLECQAAEDTAAELQNLLPGLHIGLVHGRMRPVEKQRVMEEFK 536

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH 
Sbjct: 537 AGILQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYHA 596

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLSK + +RL VL+ T DGFLIA+ DL+ R  GE+LG +Q+G+    IA       L+  
Sbjct: 597 PLSKTAQSRLGVLRETNDGFLIAQRDLELRGPGELLGTRQTGLADLKIADLVRDQPLIPQ 656

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            +K A+ ++ + P  + V     R L     Y+ A
Sbjct: 657 VQKMARFLMDRHP--SHVEPLIRRWLGLRDHYSNA 689


>gi|213963738|ref|ZP_03391988.1| ATP-dependent DNA helicase RecG [Capnocytophaga sputigena Capno]
 gi|213953618|gb|EEB64950.1| ATP-dependent DNA helicase RecG [Capnocytophaga sputigena Capno]
          Length = 704

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 244/706 (34%), Positives = 372/706 (52%), Gaps = 29/706 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L   +S  RGVG + +  L   +         + DLL   P+ +IDR    KI+E+  
Sbjct: 5   NILHTSISHLRGVGAQRAELLKTEL-----GIYEYQDLLNLFPNRYIDRTKFYKINELQN 59

Query: 67  ER-IVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
               V + G I    + +   QK         D TG + L++F +  + L++        
Sbjct: 60  NNAEVQLVGKIVNLRTVESAHQKSNRLVATFVDETGTMELVWF-KGLKWLRDSLKINEPY 118

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNS-QDVNFPLIEAVYSLPTGL-----SVDLFKKIIVE 177
            + GK+        M HP     +  +      I+ VY     L     +  + ++++  
Sbjct: 119 VIFGKLNFFGGTFSMPHPEMDLLSEFKKTGHNSIQPVYPSTEKLAKRNITNRVMRQLVQT 178

Query: 178 ALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
               +     E +   +L   +  S  EA   IH P         S    RL ++EL   
Sbjct: 179 VFEEIGYNFTENLPDTILTAMNLISKQEAMCNIHFPTNQSLLTKASI---RLKFEELFYI 235

Query: 237 QIALLLMRKQFKKEIGI---PINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKN 292
           Q+   L+RK    +      P    G         ++PF  T +Q+ A+K+I  D+    
Sbjct: 236 QV--QLVRKNLLHKQKFQGQPFKKVGDAFMNFYNYHLPFPLTNAQKRALKEIRADVGSNA 293

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +M R+LQGDVGSGKT+VAL+ M  AV+   QA +MAP  ILA QHY+ I +  +NT I V
Sbjct: 294 QMNRLLQGDVGSGKTIVALMTMLLAVDNHCQACLMAPTEILANQHYQTISELLKNTGITV 353

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+     RR   E++  G+  I+IGTHAL ++ +Q+  L L I+DEQHRFGV+QR 
Sbjct: 354 ALLTGSSKTKERRILDEQLQSGELSILIGTHALLEEKVQFQNLGLAIIDEQHRFGVEQRA 413

Query: 413 KLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           KL +K T  PH+L+MTATPIPRTL ++  GD+D+S I E P GRKPIKT+    NR  E 
Sbjct: 414 KLWRKNTIPPHILVMTATPIPRTLAMSVYGDLDVSVIDELPPGRKPIKTLHQYENRRAET 473

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDI 528
            E +K  + +G++AY + P IEE +  +F+++ E +  +   F      ++I+HG++   
Sbjct: 474 YEFIKREIDKGRQAYVVYPLIEESEALDFKNLTEGYEYITASFPLPKYKVSIVHGKLKPA 533

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +K++ M+ F     ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E
Sbjct: 534 EKDAEMERFLRNETQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGSE 593

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            S CILL    +S  +  R+  +  T DGF IAE DLK R  G+++G +QSG+    IA 
Sbjct: 594 QSYCILLTGNKMSNETRIRMETMVRTNDGFEIAEVDLKLRGPGDLMGTQQSGVLALKIAD 653

Query: 649 PELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
                 +L+ AR  A  ++  DP+L   + Q +   L   Q ++  
Sbjct: 654 LVKDQDILKAARFQAIDLVKADPNLELPQNQRVAYTLNQLQRHKNL 699


>gi|198277587|ref|ZP_03210118.1| hypothetical protein BACPLE_03809 [Bacteroides plebeius DSM 17135]
 gi|198270085|gb|EDY94355.1| hypothetical protein BACPLE_03809 [Bacteroides plebeius DSM 17135]
          Length = 699

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 240/690 (34%), Positives = 369/690 (53%), Gaps = 23/690 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +     N     DLL+Y P  ++DR     I EI
Sbjct: 1   MFDLSTRDVKYLPGVGPQRAAILNKEL-----NIYSLRDLLYYFPYKYVDRSRLYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I     F   ++R       DGTG + L++F +  + +   +    + 
Sbjct: 56  DGNMPYIQLRGRILSFEMFGEGRQRRLVGHFTDGTGVVDLVWF-QGLKYITGKYKANEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            V GK      RI + HP         ++   ++  Y+         L+    +K++   
Sbjct: 115 IVFGKPTVFNGRINVAHPDIDPAQELTLSTMGLQPYYNTTEKMKRTSLNSHALEKLMKNL 174

Query: 179 LSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
              L      E +   L+       + +A   IH P+     E    A+ RL ++EL   
Sbjct: 175 FQALQKESFEETLSPSLIAAHQLMPLTDALYNIHFPQNP---ELLRKAQYRLKFEELFYV 231

Query: 237 QIALLLM-RKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRM 294
           Q+ +L   +++  K  G+     G+I       ++PF  T +Q+  IK++ +DM    +M
Sbjct: 232 QLNILRYTKERRNKFRGLVFERVGEIFNTFYAHHLPFQLTGAQKRVIKEMRRDMGSGRQM 291

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVGSGKTLVAL+ M  A++ G QA +MAP  ILA QHYE I+++     + VE+
Sbjct: 292 NRLLQGDVGSGKTLVALMTMLIALDNGFQACMMAPTEILATQHYETIRRFLNGMPVRVEL 351

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TGN+    R   L  +  G  HI+IGTHA+ +D++ +  L LV++DEQHRFGV QR KL
Sbjct: 352 LTGNVKGKRRETILRDLLTGDVHILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRAKL 411

Query: 415 TQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             K T  PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    NR   + E
Sbjct: 412 WAKNTRPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRRKSMYE 471

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
            ++  + EG++ Y + P I+E ++ + +++ E +  + E F    ++ +HG+M   +KE 
Sbjct: 472 FMRKQIQEGRQVYIVYPLIQESEKMDIKNLEEGYMHICEEFPEYKVSKVHGKMKPAEKEE 531

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M  F     ++++ATTVIEVG++V +AS++ IENAE FGL+QLHQLRGRVGRG + S C
Sbjct: 532 EMQRFLANETQIMVATTVIEVGVNVPNASVMAIENAERFGLSQLHQLRGRVGRGADQSYC 591

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPEL 651
           IL+    L++ +  R+ ++  T DGF IAE DLK R  G++ G +QSG+     IA    
Sbjct: 592 ILVTGYKLTEETRKRIEIMVQTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIAK 651

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
              LL+  R+ A+ +L  DP+      Q I
Sbjct: 652 DGQLLQYVREIAERLLDDDPEGMKPENQII 681


>gi|117618450|ref|YP_854812.1| ATP-dependent DNA helicase RecG [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559857|gb|ABK36805.1| ATP-dependent DNA helicase RecG [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 690

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 257/695 (36%), Positives = 383/695 (55%), Gaps = 25/695 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            L + +GVG K    L ++            DLLF+ P  + DR     I ++       
Sbjct: 8   SLDSLKGVGSKMQEKLERL------GLATVQDLLFHLPLRYEDRTQVWPIGDLPPGLHGA 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I       + +RR     ++DGTG +TL FF   T   KN    GR +   G+++ 
Sbjct: 62  VEGEIQDTQLV-MGRRRMLVCRISDGTGTLTLRFFNF-TAAQKNSLSPGRLMRCFGEVRP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
            K  + M HP Y     +        +  VY    GL     + +  +AL++L +  + E
Sbjct: 120 GKYGLEMAHPEYKLLGEEQAGQTEEALTPVYPTTEGLRQLTLRSLTDQALAQLDLYGVEE 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++    +A A  ++H P  +           PA++RL  +ELLA  +++L +
Sbjct: 180 LLPAGLYPQQ--IDLAAALKLLHRPPPSVALALLESGQHPAQQRLVLEELLAHNLSVLKV 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q + ++   +     + +++L  +PF+PT +Q   + +I +D+ Q + M+R++QGDVG
Sbjct: 238 RAQAQTQLARALKPAPALVEQLLGALPFTPTGAQNRVVAEIGRDLQQSHPMMRLVQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+  G Q  +MAP  +LA+QH     K+ +   I V  + G      
Sbjct: 298 SGKTLVAALAALQAIGNGCQVGLMAPTELLAEQHAINFAKWLEPLGIGVGWLAGKQKGKA 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R +AL  IA G   +++GTHA+FQ+ + + +L LVI+DEQHRFGV QRL L +K      
Sbjct: 358 REEALAAIADGSVKMVVGTHAIFQEQVVFQRLALVIIDEQHRFGVHQRLALREKGEREGV 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T+  D+D S I E P GR PI TV +P +R  +VIER+++  
Sbjct: 418 HPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPITTVALPDSRRQDVIERVRLAC 477

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            EGK+AYW+C  IEE +    ++  +    L        I ++HGRM  ++K+ VM+ FK
Sbjct: 478 EEGKQAYWVCTLIEESEVLECQAAEDTAAELQNLLPGLHIGLVHGRMRPVEKQRVMEEFK 537

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH 
Sbjct: 538 AGMLQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHA 597

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLSK + +RL VL+ T DGFLIA+ DL+ R  GE+LG +Q+G+    IA       L+  
Sbjct: 598 PLSKTAQSRLGVLRETNDGFLIAQRDLELRGPGELLGTRQTGLADLKIADLVRDQPLIPQ 657

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            +K A+ ++ + P  + V     R L     Y+ A
Sbjct: 658 VQKMARFLMDRHP--SHVEPLIRRWLGLRDHYSNA 690


>gi|260892053|ref|YP_003238150.1| ATP-dependent DNA helicase RecG [Ammonifex degensii KC4]
 gi|260864194|gb|ACX51300.1| ATP-dependent DNA helicase RecG [Ammonifex degensii KC4]
          Length = 685

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 239/688 (34%), Positives = 381/688 (55%), Gaps = 18/688 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+   +GVG + + +LS++            DLL++ P  + DR +   +  + +   VT
Sbjct: 8   PVQYLKGVGPQRARWLSRL------GINTVGDLLYHLPRRYEDRTFSRPLQTLVDGETVT 61

Query: 72  ITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
             G +        +   +  +  L    G    ++F +    L  +   G K+TVTGK++
Sbjct: 62  ARGEVLTVEESTARSGLKIIRAALRHPEGTFYAVWFNQ--TYLTQILKPGVKVTVTGKVR 119

Query: 131 KLKNRIIMVHPHYIF-HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
           +L   I +    +    + + +N   I  +Y     L     + +I  AL         +
Sbjct: 120 RLLGFIEIQVADFEIGEDEEGINSGRIVPIYPSTEKLPQRTLRSLIFRALEENAAELPEL 179

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
               L ++ F + A+A   +H P      E    AR+RL  +EL   Q+AL   R+    
Sbjct: 180 LPPHLLRQGFFTRAQALREVHFPST---LEKAEEARKRLVLEELFLLQLALGQRRRHLAS 236

Query: 250 -EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +   P   +G + Q+ L ++PF+ T +QE A ++I +DM     M R+LQGDVG+GKT+
Sbjct: 237 AQKPYPCRPDGPLVQQFLASLPFTLTPAQERAWREISRDMESPRPMHRLLQGDVGAGKTV 296

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA +A+  AVE G Q  +MAP  ILA+QH+  +    +   I V ++TGN+ +  R + +
Sbjct: 297 VAALALVKAVENGLQGALMAPTEILAEQHFLNLHPLLEKIGIKVGLLTGNLKKELRWRQI 356

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             IA G   ++IGTH L Q+ + +++L LV++DEQHRFGV+QR  L +K  AP VL+MTA
Sbjct: 357 AAIARGDIDVVIGTHTLIQEEVSFHRLGLVVIDEQHRFGVRQRTILRRKGEAPDVLVMTA 416

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL LT  GD+D+S I   P GR+P+KT+ I  + +  V   ++   ++G +A+++
Sbjct: 417 TPIPRTLALTLYGDLDLSVIDSLPPGRQPVKTIWIKPSALPRVYNFIRQEAAQGNQAFFV 476

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           CP IEE +E N ++  +    L + F    I ++HGR+   +KE VM +F++G  KLL+ 
Sbjct: 477 CPLIEESEELNAQAASKLAEELKKFFPEFQIGLLHGRLKLEEKERVMAAFRSGEIKLLVT 536

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T+V+EVG+DV +A++++I +A+ FGLAQLHQLRGRVGR ++ S CIL+    ++  +  R
Sbjct: 537 TSVVEVGVDVPNATVMVIYDADRFGLAQLHQLRGRVGRSDKPSYCILV-ADKVTPEAQAR 595

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L    N  DGF +AEEDL+ R  GE  G +QSG+P+  +A       LL +AR++A   L
Sbjct: 596 LKAFTNLRDGFALAEEDLRIRGPGEFFGTRQSGLPELKVADLLRDHQLLPLAREEAWRFL 655

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
            +DP L+S  G+ +R  + L     AF+
Sbjct: 656 EKDPSLSSPLGRILRQEIAL--RFAAFR 681


>gi|307151126|ref|YP_003886510.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 7822]
 gi|306981354|gb|ADN13235.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 7822]
          Length = 818

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 246/686 (35%), Positives = 391/686 (56%), Gaps = 29/686 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PLS    VG + S  L+++            DLLFY+P   ID   +  I+ +    
Sbjct: 121 LDQPLSALVEVGYRKSDLLARL------GLKTVQDLLFYYPRDHIDYARQVNIANLVAGE 174

Query: 69  IVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEM--------LKNVF 117
            VTI G + + + F   K +   I   L+ D TG+I L  F+              K ++
Sbjct: 175 TVTIIGTVKRCNCFTSPKNKQLSIFELLIKDHTGQIKLNRFFAGNRFTNRGWQERQKRLY 234

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFK 172
             G  +  +G +K+ K  + + +P     +S     + +    +  VY L  G+  DL +
Sbjct: 235 AVGSLVAASGLVKQNKYGLTLENPEIEVLDSLGSNIESLKIGRVLPVYPLTEGVPADLIR 294

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           K ++EA+  +  L + + KD+        + EA   IH P      E  + AR RL +DE
Sbjct: 295 KAVIEAMGAIAQLKDPLPKDIQNSYGLIKLKEAIANIHYPETP---EILAHARRRLVFDE 351

Query: 233 LLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
               Q+  L  R+ Q + +     N  G++ +K    +PF+ T +Q+  I +I QD+   
Sbjct: 352 FFFLQLGFLQRRQEQKQTQKSASFNPRGELIEKFNEILPFALTGAQKRVIGEIQQDLKGT 411

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVGSGKT+VA+ A+ AA+++G QA +MAP  +LA+QHY  +  +     + 
Sbjct: 412 TPMNRLVQGDVGSGKTIVAVFAILAAIQSGYQAALMAPTEVLAEQHYRKLVGWFNLLHLP 471

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++TG+   + RR+   ++  G+  +++GTHAL QD + +  L LV++DEQHRFGVQQR
Sbjct: 472 VELLTGSTKVSKRREIHAQLESGELPLLVGTHALIQDPVNFRNLGLVVIDEQHRFGVQQR 531

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            +L  K  APHVL MTATPIPRTL LT  GD+D+S+I E P GR+PI+T  +      + 
Sbjct: 532 ARLLAKGQAPHVLTMTATPIPRTLALTIHGDLDVSQIDELPPGRQPIQTTALSGKERTQA 591

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE--HFTSSIAIIHGRMSDID 529
            + ++  +++G++AY I P IEE ++ + R+ VE +  L E       I ++HGRMS  +
Sbjct: 592 YDLIRREVAQGRQAYVIFPLIEESEKLDVRAAVEEYKRLSETIFPDFQIGLLHGRMSSSE 651

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+  +++F++   +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   
Sbjct: 652 KDEALNAFRDNKTQIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGSHK 711

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+     + +++ RL VL+ ++DGF I+E DL+ R  GE+LG +Q+G+P F +A  
Sbjct: 712 SYCLLM-SSSRTPDAHQRLKVLEQSQDGFFISEMDLRFRGPGEVLGTRQTGLPDFALASL 770

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTS 675
                +L IAR+ A+ I+  D  L +
Sbjct: 771 VEDQEVLNIARQAAERIMMADSSLKT 796


>gi|332975893|gb|EGK12770.1| DNA helicase RecG [Psychrobacter sp. 1501(2011)]
          Length = 748

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 258/712 (36%), Positives = 386/712 (54%), Gaps = 64/712 (8%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+    GVG K    L ++         R  DLL + P  + DR     I+E+ + +   
Sbjct: 25  PVHVLAGVGSKIEGQLEQL------GIKRLFDLLLHLPRDYEDRSRLVNINELQDGQSAL 78

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G ++   +    KR    +++ D TG + L FF     ++      G ++ + G++K 
Sbjct: 79  IEGEVTYVDN----KRSGMTVVIEDATGALQLRFFKVYAGLV-QTMTLGTRLRLFGEVKI 133

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LP-- 186
            +  I M HP Y I      V    ++ +Y    GL  +  + ++  AL  +    LP  
Sbjct: 134 SRYGIQMAHPEYSIVSPGAPVINTGLQPIYPTVKGLHQNKLRTLLKLALQTVHQQGLPLS 193

Query: 187 -----EW-----IEKDL-LQKKSFP-----------------------SIAEAFNIIHNP 212
                +W     +   L       P                       ++ EA  +IH P
Sbjct: 194 VFNSADWEAVNHLPAPLPKNSYGLPLPSAPVTPANPSSSSQAPSWQTLTLFEALTLIHTP 253

Query: 213 RKAKDF-----------EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI 261
               D            +   PA +RL  +EL A Q+++L  RKQ  +      +    +
Sbjct: 254 PMHTDIGLQAAQLTQLKDRIHPACQRLIVEELTAHQLSMLYRRKQLHQHKAPKCDKHSSL 313

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           A ++L N+PFS TK+Q+  I +I  DM+    MLR++QGDVG+GKTLVA +A   A+++G
Sbjct: 314 ADRLLANLPFSLTKAQDRVINEITSDMATSVPMLRLVQGDVGAGKTLVAALAACYALDSG 373

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  +MAP  ILA+QH    K + +   I V  + G      RR+AL+ +A  +  +++G
Sbjct: 374 WQVAVMAPTEILAEQHLINFKSWFEPLGIGVGWLAGKQTAKQRREALKAVAENEVQVVVG 433

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLT 438
           THALFQD++ + KL L I+DEQHRFGV+QR+ LT K    + PH L+MTATPIPRTL ++
Sbjct: 434 THALFQDAVVFAKLGLAIIDEQHRFGVEQRMALTDKGVADSTPHQLIMTATPIPRTLAMS 493

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           + GD+D S I E P GR PI TV I   R DEVIER+ +   EGK+AYW+CP +++    
Sbjct: 494 AYGDMDTSIIDELPPGRTPITTVTIDRARRDEVIERIAINCKEGKQAYWVCPLVDDSNTL 553

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           N ++    +  L E     I ++HG+M   +K++VM +FKNG   LL+ATTVIEVG+DV 
Sbjct: 554 NAQAAEATYADLSERLDIRIGMVHGKMKGAEKQAVMAAFKNGELDLLVATTVIEVGVDVP 613

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +AS+++IENAE  GL+QLHQLRGRVGRG   S C+LLY  PLS+    RL+VL+++ DGF
Sbjct: 614 NASLMVIENAERLGLSQLHQLRGRVGRGSTKSFCVLLYQTPLSETGIERLNVLRDSNDGF 673

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           +IA++DL+ R  GE+LG +Q+G   + ++     ++LL IA   AK ++  D
Sbjct: 674 VIAQKDLQLRGPGELLGKRQTGNVGYYVSDLSRDENLLMIASHLAKRLINDD 725


>gi|125717410|ref|YP_001034543.1| ATP-dependent DNA helicase RecG [Streptococcus sanguinis SK36]
 gi|125497327|gb|ABN43993.1| ATP-dependent DNA helicase recG, transcription-repair coupling
           factor, putative [Streptococcus sanguinis SK36]
          Length = 671

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 239/688 (34%), Positives = 387/688 (56%), Gaps = 27/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D      + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL------GLETLQDLLLYFPFRYEDF-KSKNVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGRVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    +    +D     ++ VY L  G+S     K+I  A  +    +L 
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S  EA   +H P+   D+     A  R+ ++EL   Q+ L +++++
Sbjct: 169 ENLPQPLLERYQLVSRVEAVRAMHFPKDLADY---KQALRRVKFEELFYFQMQLQVLKRE 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVGSG
Sbjct: 226 TKAVSNGLKIDWQLDAVAEKKKSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A RR
Sbjct: 286 KTVVAGLAMYAVYTAGYQSALMVPTEILAEQHFDSLTQLF--PELKLALLTGGMKTAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I  GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P VL+
Sbjct: 344 ETLSAIEKGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ +K  L +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWMKKELHKGAQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G   
Sbjct: 464 YFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGRTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYN 691
             I T DP+  +     + I L+L + +
Sbjct: 643 SQI-TADPNWRTDPSWHL-IALHLDKRD 668


>gi|332365660|gb|EGJ43418.1| DNA helicase RecG [Streptococcus sanguinis SK1059]
          Length = 671

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 240/688 (34%), Positives = 389/688 (56%), Gaps = 27/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D      + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFTKL------GLETLQDLLLYFPFRYEDF-KSKNVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    +    +D     ++ VY L  G+S     K+I  A  +    +L 
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQANLVKLIKTAFDQGLDLLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S  EA   +H P+   D+     A  R+ ++EL   Q+ L +++++
Sbjct: 169 ENLPQSLLERYQLVSRVEAVRAMHFPKDLADY---KQALRRVKFEELFYFQMQLQVLKRE 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVGSG
Sbjct: 226 TKAVSNGLKIDWQSDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A RR
Sbjct: 286 KTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I +GQ  +I+GTHAL Q++++Y+ L LVI+DEQHRFGV+QR  L +K   P VL+
Sbjct: 344 ETLAAIENGQVDMIVGTHALIQEAVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ LK  L +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGAQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G   
Sbjct: 464 YFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGRTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYN 691
             I T DP+  +     + I L+L + +
Sbjct: 643 SQI-TADPNWRTDSNWHL-IALHLDKRD 668


>gi|299768653|ref|YP_003730679.1| ATP-dependent DNA helicase RecG [Acinetobacter sp. DR1]
 gi|298698741|gb|ADI89306.1| ATP-dependent DNA helicase RecG [Acinetobacter sp. DR1]
          Length = 681

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 259/672 (38%), Positives = 390/672 (58%), Gaps = 21/672 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             +   +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R  
Sbjct: 2   TSVHQLQGVGSASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIAMNQLVVGRSY 55

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G +     F   KR+    L+ D  G++TL F++     L +    G ++ + G+++
Sbjct: 56  LLEGEVRSI-DFPPGKRKSMAALVQDEFGKVTLRFYHIYKN-LTDKIKPGHRLRIFGEVR 113

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
                + M HP   + H    +    + A+Y    GL+    ++ + +AL      LPE 
Sbjct: 114 VGARGLEMYHPEIQLIHEHTPLPKTQLTAIYPSTDGLTQPKLREYVKQALKHHSDALPEL 173

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244
           + K      +     EA   IH P    +     + + PA++RL ++EL+A QI+LL  R
Sbjct: 174 LPKKYTNGYAL---KEALYYIHEPPIDANMLQLAQGSHPAQQRLIFEELVAHQISLLNRR 230

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              ++      +    +A+K+L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+
Sbjct: 231 AYIRQIASPAFSSSKILAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGA 290

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R
Sbjct: 291 GKTLVAAVAACHALEADWQVALMAPTEILAEQHYLNFKRWFEPLGITVAWLSGKQKGKAR 350

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---AP 421
            +A ++I  G A +I+GTHALFQD++ + KL LVI+DEQHRFGV QRL L  K      P
Sbjct: 351 AQAEQQIKEGHAELIVGTHALFQDNVGFAKLGLVIIDEQHRFGVDQRLALRNKGAEQFTP 410

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     +
Sbjct: 411 HQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCRD 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           GK+AYW+C  +E+ +  + ++    +  + E F   +I ++HG+M   +K+SVM +FKN 
Sbjct: 471 GKQAYWVCTLVEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQSVMQAFKNN 530

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LLIATTVIEVG+DV ++SI++IENAE  GL+QLHQLRGRVGRG + S C+LLY  PL
Sbjct: 531 ELQLLIATTVIEVGVDVPNSSIMVIENAERLGLSQLHQLRGRVGRGAQASFCVLLYKTPL 590

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A 
Sbjct: 591 SQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLERDDHLLSQAH 650

Query: 661 KDAKHILTQDPD 672
             A+ +L   P+
Sbjct: 651 YVAQQVLKDYPE 662


>gi|323702705|ref|ZP_08114366.1| ATP-dependent DNA helicase RecG [Desulfotomaculum nigrificans DSM
           574]
 gi|323532368|gb|EGB22246.1| ATP-dependent DNA helicase RecG [Desulfotomaculum nigrificans DSM
           574]
          Length = 685

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 239/676 (35%), Positives = 385/676 (56%), Gaps = 21/676 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+   +GVG   S  L ++            DLL++ P  + DR         +   + T
Sbjct: 7   PVQFLKGVGPSRSKQLERL------GIITIEDLLYHFPREYHDRSLIRPAHSFAHGEMAT 60

Query: 72  ITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           + G +   S    + RR   I    L DG      ++F +    +K  +  G+K+ +TGK
Sbjct: 61  VKGTVIGGSE--TKPRRGLTITKLALQDGAATFYAVWFNQ--PYIKKQYTTGKKLLITGK 116

Query: 129 IKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLP 186
           I +      +    +   +  + ++   I  +Y     +S    + II  AL ++   +P
Sbjct: 117 IDRNFGLPQVHVTDHELLDGDEGLHSGRIVPIYPATENVSQRFLRSIIKFALDQIGTQVP 176

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E++   +L + + P + EA   IH PR   D E    AR+R   +EL   Q+ L L R  
Sbjct: 177 EFLPDKILDRYNLPCLPEALYNIHFPR---DMESCQRARKRFILEELFLFQLGLGLQRSY 233

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
             ++  +    +G++  ++L+N+PFS T +Q+   ++I  D+   + M R+LQGDVG+GK
Sbjct: 234 LTRQPKMHRYNQGRLTGQLLQNLPFSLTAAQQRVWQEIESDLQGPHPMNRLLQGDVGAGK 293

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA +A+  A E+G Q  +MAP  +LA+QH   IK++ +   I V ++TG+  +  R++
Sbjct: 294 TVVAALALCRAAESGLQGSLMAPTELLAEQHARSIKEFLEPLGIKVALLTGS-SKRGRQQ 352

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            L  IA+G   +++GTHAL  + +Q+  L LV+VDEQHRFGV+QR  L  K   P +L+M
Sbjct: 353 VLADIANGVIPVVVGTHALIYEQVQFKNLGLVVVDEQHRFGVRQRAALLDKGYRPDMLVM 412

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL LT  GD+D+S I E P GR+ IKT  + + +  + +  ++    +G+++Y
Sbjct: 413 TATPIPRTLALTLYGDLDVSVIDELPPGRQDIKTYHLTLAQAGKAVGLIRQQADQGRQSY 472

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            +CP +EE ++ + ++ ++ F  L +   S  + ++HGRM   +KESVM +F+ G+  +L
Sbjct: 473 VVCPLVEESEKLDTQAAIDLFERLQKALPSCRVGLLHGRMKANEKESVMTAFRQGSLDVL 532

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P  +K + 
Sbjct: 533 VSTTVIEVGVDVPNATVMVIWDAQRFGLAQLHQLRGRVGRGSQQSYCILVANPT-TKEAQ 591

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+  +  T+DGF++AEEDLK R  GE  G +QSG+P F IA        +  ARK+A  
Sbjct: 592 ERIKAMCRTQDGFVLAEEDLKLRGPGEFFGTRQSGLPNFKIADLVRDRREVAQARKEAAQ 651

Query: 666 ILTQDPDLTSVRGQSI 681
           +L QDPDL   + Q +
Sbjct: 652 LLAQDPDLRLSQHQQL 667


>gi|85708437|ref|ZP_01039503.1| DNA helicase [Erythrobacter sp. NAP1]
 gi|85689971|gb|EAQ29974.1| DNA helicase [Erythrobacter sp. NAP1]
          Length = 687

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 282/702 (40%), Positives = 425/702 (60%), Gaps = 17/702 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA   T  GVG K +  L K+        TR  DL ++ P  F+ R     
Sbjct: 1   MRPDILNPLFAESQTLDGVGPKLAKPLEKL------GLTRVKDLAYHLPERFVTRRAIAN 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFE 119
           + E +E   V +    ++H + +   R PY+++  D  G +  L +F R +   K     
Sbjct: 55  LDEGAEGEQVIVALTATEHRAARNPGRGPYRVMAQDEVGNMCALTYFGRASYTAKKQLPV 114

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  + G++ +  + + +VHP ++  +S      + E VYSL  GL+      ++ ++L
Sbjct: 115 GEKRWIAGRLDRYGDMLQIVHPDHVEKDSAAHLARMNEPVYSLSEGLTQPRVAGLVAQSL 174

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            RLP LPEWIE    +++ +P+  +A ++          +    AR+RLAYDELLA  +A
Sbjct: 175 ERLPELPEWIEPGQFEREGWPNWHDALHL-------AHKDQHEKARDRLAYDELLANSLA 227

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           LLL+R   +++ G P+  +  +  ++  ++PF  T +Q+ ++ +I  D+ Q+  MLR+LQ
Sbjct: 228 LLLVRADGRRKRGQPLKGDRSLRDRL--DLPFEMTGAQKRSVSEIEGDLQQEAPMLRLLQ 285

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VAL AM  AVEAG QA ++AP  ILA+QH+E ++K    T   V I+TG  
Sbjct: 286 GDVGAGKTVVALEAMLIAVEAGKQAALLAPTEILARQHFETLRKMAAPTGAEVAILTGRA 345

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-A 418
               R   L  + +G   I++GTHA+FQDS+ Y  L LV++DEQHRFGVQQRL L  K  
Sbjct: 346 KGREREGLLMSLLNGDIDILVGTHAIFQDSVTYKDLALVVIDEQHRFGVQQRLALAAKGK 405

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            APH L MTATPIPR+L L   G++D+S++ E P GR+ I T ++   R+++++  ++  
Sbjct: 406 RAPHTLAMTATPIPRSLTLAQYGEMDVSRLDELPPGRQAIDTRVVAQERMEDIVSGVERH 465

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L+ G++AYW+CP + + + ++  +   R+ SL E F   + ++HG++    K++ M+ F 
Sbjct: 466 LATGQQAYWVCPMVRDSETADIAAAEARYASLKERFGDDVVLVHGQLRPEIKDANMERFA 525

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G  KLLIATTVIEVG+DV  A++++IE AE FGLAQLHQLRGRVGRG E S C+LL   
Sbjct: 526 SGGSKLLIATTVIEVGVDVPSATLMVIEQAERFGLAQLHQLRGRVGRGSEKSVCLLLRGG 585

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            LS+    RL++++ T+DGF IAEEDL+ R  GE+LG +QSG   F IA  E    LL  
Sbjct: 586 ELSEAGRKRLALMRETQDGFRIAEEDLELRGGGELLGTRQSGEAAFRIANLEQVQKLLPA 645

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A  DA+ ++ +D  LTS RG++ R+LLYL++ +   Q +R G
Sbjct: 646 AHADARLLIDRDGGLTSQRGEAARVLLYLFERDWGVQLLRGG 687


>gi|52425790|ref|YP_088927.1| RecG protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307842|gb|AAU38342.1| RecG protein [Mannheimia succiniciproducens MBEL55E]
          Length = 693

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 257/688 (37%), Positives = 386/688 (56%), Gaps = 26/688 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  LSKI            DLLF+ P  + DR     
Sbjct: 1   MTTQLLDAI--PLTSLSGVGAAVSAKLSKI------GINNLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           IS++  E+  TI G I Q    Q  +R    + L+DGT +I L FF     M +N F  G
Sbjct: 53  ISDLRPEQYATIEG-IVQTCEIQFGRRPILTVSLSDGTSKIMLRFFNFNAGM-RNGFQPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++K+ +    + HP Y     +        +  +YS   GL  +  +K+  +A
Sbjct: 111 ARVKAFGEVKRGRFMAEIHHPEYQIIRDKQPLQLEENLTPIYSATEGLKQNSLRKLTDQA 170

Query: 179 LSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDE 232
           L  L  +   E +         F S+ EA   +H P      E     T PA+ RL ++E
Sbjct: 171 LELLDKIQIAEILPDQF-NPYPF-SLKEAIRFLHRPPPDVSVESLEKGTHPAQVRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++   +P++ +  + Q+ L  +PF PT +Q    +DI +D+++  
Sbjct: 229 LLAHNLAMQKVRLGTQQFQALPLHFQTDLKQRFLATLPFEPTNAQVRVTQDIERDLAKDY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH E  +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHAENFRRWFEPFGIEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R+  LERI + +  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKARQSELERIKNAEVQMVVGTHALFQEEVAFSDLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PIKT+++   R 
Sbjct: 409 LLREKGEKAGNYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPIKTIVVSEERR 468

Query: 469 DEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
            E++ R+     +E ++ YW+C  I+E +    ++       LH       I ++HGRM 
Sbjct: 469 AEIVARVHNACTNENRQVYWVCTLIDESEVLEAQAAEATAEDLHRALPHLRIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+++M SFK     LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PAEKQAIMASFKAAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL VL+ ++DGF+I+E+DL+ R  GE+LG KQ+G+ +F +
Sbjct: 589 STASFCVLMYKPPLGKISQKRLQVLRESQDGFVISEKDLEIRGPGEVLGTKQTGIAEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
           A       ++   +  A+ ++ + PD+ 
Sbjct: 649 ANLMRDRKMIPTVQHYARRLIVEYPDVA 676


>gi|299536784|ref|ZP_07050092.1| ATP-dependent DNA helicase RecG [Lysinibacillus fusiformis ZC1]
 gi|298727796|gb|EFI68363.1| ATP-dependent DNA helicase RecG [Lysinibacillus fusiformis ZC1]
          Length = 681

 Score =  576 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 252/698 (36%), Positives = 374/698 (53%), Gaps = 25/698 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L+ P++  +GVGK+ +  L  +            DLL+  P    D      +++  
Sbjct: 1   MTELYGPVNELKGVGKETAAHLESL------GINTIADLLWTFPHRHEDFR-LKDLAQTP 53

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKI 123
               VT+   + +  +     R   ++ +    G   + ++FF +    LK     G  I
Sbjct: 54  HNERVTVECKVEREPTILFLGRNKSRLQVTVLAGRHLVKVVFFNQG--YLKQKLVPGSII 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL- 182
           TVTGK  + +  I      +     Q       E VYSL   +    F+K + + L    
Sbjct: 112 TVTGKWDRGRQVINGTAVTFGPKTDQVD----FEPVYSLKGLIPQKRFRKYMRQVLDDCG 167

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            VLPE I   L +     SI E    IH P    D E    AR R AY+ELL  Q+ +  
Sbjct: 168 EVLPETIPYYLQESYKLVSIREGLEGIHFPL---DAEHAKQARRRFAYEELLNFQLRIQA 224

Query: 243 MRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +RK  K       I       +  + ++P+  T +Q+  + +I +D+ + +RM R+LQGD
Sbjct: 225 LRKIRKDSEHGTVIQFNVHKLRDFIASLPYELTNAQKRVVNEICKDLKEPHRMNRLLQGD 284

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA I + AAV AG Q  +MAP  ILA+QH E +K++ Q   + V +++G+   
Sbjct: 285 VGSGKTVVAAIGLYAAVTAGFQGALMAPTEILAEQHLENLKEWFQPFGVRVALLSGSTKT 344

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR  L  +A+G   I+IGTHAL Q  + ++KL  VI DEQHRFGV+QR  L  K   P
Sbjct: 345 KERRAILADLANGDLDIVIGTHALIQPDVIFHKLGFVITDEQHRFGVEQRRILRDKGENP 404

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T  +   +   V+ +L++ L+ 
Sbjct: 405 DVLFMTATPIPRTLAITAFGEMDVSMIDEMPAGRKQIETHWMKKEQFGSVLSKLELELAA 464

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKN 539
           G++AY ICP IEE  + + ++ VE +  L  +F     + ++HGR+S  +K++VM +F  
Sbjct: 465 GRQAYAICPLIEESDKLDVQNAVEIYEQLATYFKDRYHVGLMHGRLSADEKDAVMRAFSE 524

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GT ++L++TTV+EVG++V +A+ +++ +AE FGLAQLHQLRGRVGRGE  S CILL  P 
Sbjct: 525 GTIQVLVSTTVVEVGVNVPNATFMLVYDAERFGLAQLHQLRGRVGRGEHQSYCILLADPK 584

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            S     R+  +  T DGF +AE+DL+ R  G+  G KQSG+P F +A       +LE A
Sbjct: 585 -SDEGKERMQSMTETNDGFRLAEKDLELRGPGDFFGRKQSGLPDFKVADLVHDYRILETA 643

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQ--YNEAFQ 695
           RKDA  +L           Q +R +L        E F 
Sbjct: 644 RKDASEMLETKAFWQDDDYQYLRKMLEDTGVLQGERFD 681


>gi|268592266|ref|ZP_06126487.1| ATP-dependent DNA helicase RecG [Providencia rettgeri DSM 1131]
 gi|291312043|gb|EFE52496.1| ATP-dependent DNA helicase RecG [Providencia rettgeri DSM 1131]
          Length = 693

 Score =  576 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 250/696 (35%), Positives = 388/696 (55%), Gaps = 26/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            L++  G+G   S  + KI            DLL + P  + D     +I ++      T
Sbjct: 10  SLTSLHGIGASQSEKMRKI------GLNTVQDLLLHFPLRYEDHTRLYQIKDLLPGTTAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           ITG I Q       ++R    L++DGTG +TL FF     M KN   EG+++T  G++++
Sbjct: 64  ITGEILQTKVV-FGRKRMMTCLISDGTGNLTLRFFNFSASM-KNNLAEGKQVTAYGEVRR 121

Query: 132 LKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
                 ++HP Y              +  VY    G+     +K++ +AL  L    + E
Sbjct: 122 GNTGPEIIHPEYKVSQDTSNISLQENLTPVYPTTEGVRQATLRKVMEQALRLLDSGKIKE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            + ++L   +   S+ +A  ++HNP          +   PA++RL  +ELLA  +++L +
Sbjct: 182 LLPEEL--SRGMISLPDAIRLLHNPPPNVALIELEKGHHPAQKRLILEELLAHHLSMLAI 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   ++    P+   G++  ++L  +PFSPT +Q   + +I  D+++   M+R++QGDVG
Sbjct: 240 RAGNERLYAEPLTTSGQLKSQLLAQLPFSPTNAQNRVVSEIEADLAKDAPMMRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  ILA+QH    K++ +   I V  + G      
Sbjct: 300 SGKTLVAALAAVCAIENGKQVALMAPTEILAEQHANTFKQWLEPLGIKVGWLAGKQKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R+   + IA G+  +++GTHA+FQ+ + +  L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RQAQQDAIASGEVAMVVGTHAIFQEQVSFKALGLVIIDEQHRFGVHQRLALREKGEQQGY 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
            PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R +++IER++   
Sbjct: 420 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRNDIIERVRQAC 479

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           + EG++AYW+C  IE+ +    ++       L        + ++HGRM   +K+S+M +F
Sbjct: 480 IEEGRQAYWVCTLIEDSELLEAQAAQVTSEELALALPELKVGLVHGRMKPAEKQSIMAAF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K    +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 540 KRNEIQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAIASHCVLLYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PL+  +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A       +L 
Sbjct: 600 TPLTHTAKQRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQYMLP 659

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             ++ A+HI    P+  + +    R L    QY+ A
Sbjct: 660 EVQRLARHIQQNYPE--NAQQLIERWLPEREQYSHA 693


>gi|163757124|ref|ZP_02164228.1| ATP-dependent DNA helicase [Kordia algicida OT-1]
 gi|161322945|gb|EDP94290.1| ATP-dependent DNA helicase [Kordia algicida OT-1]
          Length = 701

 Score =  576 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 241/690 (34%), Positives = 373/690 (54%), Gaps = 23/690 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P+   +GVG   +  L K +         + D +   P+ +ID+    K++E+  
Sbjct: 4   NVLQTPIDYLKGVGPNRADLLRKEL-----GIHTYQDFINLFPNRYIDKTRYFKVNELQR 58

Query: 67  ER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               V + G I      Q ++ +       D TGE+ L++F R  + +K+         +
Sbjct: 59  NSSEVQVVGKIVHIKMVQQKRGKRLVATFVDATGEMELVWF-RGHKWIKDSLKLNTPYVI 117

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPT-----GLSVDLFKKIIVEAL 179
            GK         M HP        + +    ++ VY         G++  +  K++ +  
Sbjct: 118 FGKTNWFNGTFSMPHPEMELLKEHEQSLRTAMQPVYPSTEKLNNKGITNRVINKLMQQLF 177

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
                   E +   +L +    S  EA   IH P+     E  + A+ RL ++EL   QI
Sbjct: 178 IESRTQFYETLPPTILNELKLISKTEALFNIHFPKSQ---ELLAKAQYRLKFEELFYIQI 234

Query: 239 ALLLMRKQFKKEIG-IPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            L+      K +I   P +  G+   +    ++PF  T +Q+  IK+I  D+    +M R
Sbjct: 235 QLITKNLIHKSKIKGFPFDQVGEKFNEFYANHLPFELTNAQKRVIKEIRNDLGSNAQMNR 294

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VAL++M  A++   QA IMAP  ILA QHY  I +  +   + V+++T
Sbjct: 295 LLQGDVGSGKTIVALMSMLLAIDNDFQACIMAPTEILAIQHYNGIMELVKPLGLNVKLLT 354

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G++    RR   E +  G  HI+IGTHA+ +D +Q+  L L I+DEQHRFGV QR KL  
Sbjct: 355 GSVKTKDRRVIHEMLEDGSLHILIGTHAILEDKVQFKNLGLAIIDEQHRFGVAQRAKLWH 414

Query: 417 KATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           K T P H+L+MTATPIPRTL ++  GD+D+S I E P GRK IKTV    +   +V   +
Sbjct: 415 KNTFPPHILVMTATPIPRTLAMSLYGDLDVSVIDELPPGRKAIKTVHRYDSNRLKVFRFI 474

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKES 532
           +  +++G++ Y + P I+E ++ +++ +++ + S+   F      I+I+HG+M   DK+ 
Sbjct: 475 RDEIAKGRQIYIVYPLIQESEQLDYKDLMDGYESIAREFPMPDYQISIVHGKMKPADKDF 534

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M+ F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E S C
Sbjct: 535 EMNRFIKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGAEQSFC 594

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           IL+    LS +  TRL  +  T DGF IAE DLK R  G I+G +QSG+    IA     
Sbjct: 595 ILMTSHKLSADGKTRLETMVRTSDGFEIAEVDLKLRGPGNIMGTQQSGVLNLKIADIVKD 654

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           + +L+ AR  A+ +L  DP L +   +++R
Sbjct: 655 NDILKTARYFAQQVLKADPSLMAPEHKAVR 684


>gi|114321587|ref|YP_743270.1| ATP-dependent DNA helicase RecG [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227981|gb|ABI57780.1| ATP-dependent DNA helicase RecG [Alkalilimnicola ehrlichii MLHE-1]
          Length = 705

 Score =  576 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 250/679 (36%), Positives = 388/679 (57%), Gaps = 21/679 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           +P   P++  RGVG + +  L+++      +     DLLF+ P  + DR    ++  +  
Sbjct: 16  DPAGQPITALRGVGPQLAERLARL------HLATVQDLLFHLPLRYEDRDTVRRLGALRP 69

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
                + G + +H+     +R+   + ++DGTG   L+FF+      +     G  I   
Sbjct: 70  GESGVVIGRV-EHAGIAEGRRKRLIVQISDGTGSADLVFFHFHPGQ-RQQMRPGTPIRCF 127

Query: 127 GKIKKLKNRIIMVHPHYIF---HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           G+++       MVHP Y      ++ D     +  VY    GL     +K+I +AL+   
Sbjct: 128 GELRPGPTGPQMVHPEYRLGPRASAGDEGPHGLTPVYPTTQGLHQQTLRKLIDQALALAR 187

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIA 239
            +P+W+  +L ++   P++AEA   +H P    D     E   P  +RLA +ELLA  ++
Sbjct: 188 HMPDWLPAELTRELGLPALAEALYYVHKPPVDADTAPLVEGRHPCVQRLAVEELLAHHLS 247

Query: 240 LLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +  +R   +     P I+ +G++ +++L ++PF+ T++Q    +++ +DM++   MLR++
Sbjct: 248 MRRLRAHLQAAADAPTIHGDGRLTRRLLDSLPFALTEAQRRVDRELAEDMTRSVPMLRLV 307

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA +A   AVEAG QA IMAP  +LA+QH+    ++     I V  ++G 
Sbjct: 308 QGDVGSGKTVVAALAALRAVEAGYQAAIMAPTELLAEQHWRSFNEWLAPLDIPVGWVSGR 367

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK- 417
                R   L  +A G   +++GTHALFQD +++  L LVIVDEQHRFGV QRL L +K 
Sbjct: 368 AAGRRREAMLAALAAGDYPVVVGTHALFQDDVRFQALGLVIVDEQHRFGVHQRLALKEKG 427

Query: 418 ---ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               + PH ++MTATPIPRTL +T+  D+D+S I + P GRKP+KTV +   R DEV+ R
Sbjct: 428 HRGRSQPHQIIMTATPIPRTLAMTAYADLDVSVIDQLPPGRKPVKTVAVSETRRDEVVAR 487

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +   L++G++AYW+C  IE+ +    ++  E + +L        + ++HGRM   DK++V
Sbjct: 488 IGAALAQGRQAYWVCTLIEDSEVLEAQAAEETYAALQAALPGHRVGLVHGRMKPADKDTV 547

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F  G   LL+ATTVIEVG++V +AS++IIENAE  GLAQLHQLRGRVGRGE  SSC+
Sbjct: 548 MADFAAGRIGLLVATTVIEVGVNVPNASLMIIENAERLGLAQLHQLRGRVGRGEAESSCV 607

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+YH PLS+ +  RL VL+ + DGF IA  DL+ R  GE+LG +Q+G   + +A      
Sbjct: 608 LMYHGPLSQAARARLEVLRRSNDGFEIARRDLEIRGPGELLGTRQTGELSYRVADLNRDA 667

Query: 654 SLLEIARKDAKHILTQDPD 672
            LL   +     +    P+
Sbjct: 668 GLLPRVQVLGDRLQQAHPE 686


>gi|228473081|ref|ZP_04057838.1| ATP-dependent DNA helicase RecG [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275663|gb|EEK14440.1| ATP-dependent DNA helicase RecG [Capnocytophaga gingivalis ATCC
           33624]
          Length = 698

 Score =  576 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 254/701 (36%), Positives = 379/701 (54%), Gaps = 24/701 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   RGVG + +L L   +   N     F DLL   P+ +ID+    KI ++ E  
Sbjct: 2   LETPIEYLRGVGPQRALLLKSELQVAN-----FQDLLHLFPTRYIDKTQYYKIQDLRETT 56

Query: 69  I-VTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
             V + G I    + + + +  +       DGTG + L++F R ++ +K+         +
Sbjct: 57  TEVQVVGRIIHLKTVEGKNKTQQRLVATFTDGTGNMELVWF-RPSQWIKDHLLLNVPYVI 115

Query: 126 TGKIKKLKNRIIMVHPHYI-FHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEAL 179
            GK         M HP        Q      I+AVY         G++  + +K+I    
Sbjct: 116 FGKCTPFSGVFSMAHPEMETLEEHQHSLQGNIQAVYPSTEKLTKKGITQKVIRKLIESLF 175

Query: 180 SRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
             +     E +   LL         EA   IH P+     E  S A+ RL  +EL   Q+
Sbjct: 176 QEVGKNFFETLPPQLLTSLRLLPKGEALFQIHFPQSQ---ELLSKAQFRLKLEELFYIQL 232

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            L+      KK  G P  + G        +++PF  T +Q+  IK+I  DM+   +M R+
Sbjct: 233 QLIQKNYLNKKLKGYPFPLVGDYFNTFYHKHLPFPLTNAQKRVIKEIRSDMATGAQMNRL 292

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVG+GKT+VAL AM  A++   QA +MAP  ILAQQHY+ I        I   ++TG
Sbjct: 293 LQGDVGAGKTIVALFAMLLALDNQYQACLMAPTEILAQQHYQSIASLLAPMDIQPALLTG 352

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-Q 416
           +     RRK LE + +GQ  I+IGTHAL +D ++++ L L I+DEQHRFGV+QR KL  +
Sbjct: 353 STKTKERRKILEELENGQLQIVIGTHALLEDKVKFHNLGLSIIDEQHRFGVEQRSKLWHK 412

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
            A  PHVL+M+ATPIPRTL ++  GD+D+S I E P GRKPI+T+        +V + L 
Sbjct: 413 NALPPHVLIMSATPIPRTLAMSLYGDLDVSVIDELPPGRKPIQTLHQYDTHRAKVYQFLH 472

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESV 533
             +++G++ Y + P IEE +  +F+++ E +  L   F     +IA++HG++   +KE+ 
Sbjct: 473 DQIAKGRQVYVVYPLIEESEALSFKNLSEGYQQLCSAFPPPKYTIAMVHGQLKPEEKEAQ 532

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F  G  ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S CI
Sbjct: 533 MQLFVEGKAQIMVATTVIEVGVNVPNASVMLIESAERFGLSQLHQLRGRVGRGAEQSYCI 592

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+    LS +S TR+  +  T DGF IAE DLK R  G+++G +QSG+    IA      
Sbjct: 593 LMTDVKLSHDSRTRMETMVATCDGFQIAEVDLKLRGPGDLMGRQQSGVLSLKIADLVKDS 652

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
            LL++AR  A  ++  DP+LT      +   L + + N+  
Sbjct: 653 QLLKVARDYATDLIRVDPELTDPAHLQVAHTLNMLKKNKGI 693


>gi|254414435|ref|ZP_05028201.1| ATP-dependent DNA helicase RecG [Microcoleus chthonoplastes PCC
           7420]
 gi|196178665|gb|EDX73663.1| ATP-dependent DNA helicase RecG [Microcoleus chthonoplastes PCC
           7420]
          Length = 826

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 233/690 (33%), Positives = 387/690 (56%), Gaps = 29/690 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L +PLS    +G++ S +L ++            D+L+Y+P   ID   +  + ++  
Sbjct: 127 FTLDSPLSELPDIGRRRSDYLGRL------GVYTVRDMLYYYPRDHIDYARQVNVKDLVA 180

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEM--------LKN 115
              VT+ G + + + F   + +   I   L+ D TG++ L  F+              K 
Sbjct: 181 GETVTVVGTVKRCNCFTSPRNKKLSIFELLIKDSTGQLKLNRFFAGNRFSHRGWQEQQKR 240

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDL 170
            +  G  +  +G +KK K  I +  P     +        +    +  VY L  G+  D 
Sbjct: 241 RYPAGAIVAASGLVKKNKYGITLDTPEIEVLDHLGGSIDSLKIGRVMPVYPLTEGVPADW 300

Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
            ++ ++ AL  +  L E + K + Q+     +++A   +H P    D +  S AR RL +
Sbjct: 301 VRQAVMAALPAVNQLQEPLPKGMRQQYDLMGVSDAIANLHFPT---DTDTLSRARRRLVF 357

Query: 231 DELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
           DE    Q+  L  RK Q + +    +   GK+  +  + +PF  T +Q+  + DIL D+ 
Sbjct: 358 DEFFYLQLGFLQRRKMQQQVQSSAILAPTGKLIDRFYQLLPFELTSAQKRVVNDILNDLQ 417

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           Q   M R++QGDVGSGKT+VA+IA+ AA+++G QA +MAP  +LA+QHY  +  +     
Sbjct: 418 QPTPMNRLVQGDVGSGKTVVAVIAILAAIQSGYQAALMAPTEVLAEQHYRKLVSWFNLLH 477

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + VE++TG++    RR+   ++  G+  +++GTHAL QD + + +L LV++DEQHRFGV+
Sbjct: 478 LPVELLTGSVKVKKRREIHSQLETGELPLLVGTHALIQDPVNFQRLGLVVIDEQHRFGVE 537

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR +L QK  +PHVL +TATPIPRTL LT  GD+D+S+I E P GR+ I T ++      
Sbjct: 538 QRAQLQQKGQSPHVLTLTATPIPRTLALTLHGDLDVSQIDELPPGRQNIHTSVLTGKERQ 597

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE--HFTSSIAIIHGRMSD 527
              + ++  +++G++ Y + P IEE ++ + RS VE    L E       + ++HGRMS 
Sbjct: 598 NAYDLMRREIAQGRQVYIVLPLIEESEKLDVRSAVEEHQRLSESIFPQFQVGLLHGRMSS 657

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K+  +++F++   +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG 
Sbjct: 658 AEKDEALNAFRDNQTQIIVSTTVIEVGVDVPNATVMMIENAERFGLSQLHQLRGRVGRGS 717

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C+L+     +  +  RL VL+ ++DGF I+E D++ R  GE+LG +QSG+  F +A
Sbjct: 718 HQSYCLLMSGSK-TDTARQRLGVLEQSQDGFFISEMDMRFRGPGEVLGRRQSGLADFALA 776

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVR 677
                  +L +AR  A+ I+ +D  L ++ 
Sbjct: 777 SLVEDQEVLNLARDAAEKIVLEDKALENLP 806


>gi|325693569|gb|EGD35488.1| DNA helicase RecG [Streptococcus sanguinis SK150]
          Length = 671

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 238/688 (34%), Positives = 387/688 (56%), Gaps = 27/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D      + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFTKL------GLETLQDLLLYFPFRYEDF-KSKNVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  + V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVVLAVNFFNQPYLADKIEVGANVAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    +    +D     ++ VY L  G+S     K+I  A  +    +L 
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S  EA   +H P+   D+     A  R+ ++EL   Q+ L +++++
Sbjct: 169 ENLPQPLLERYQLVSRVEAVRAMHFPKDLADY---KQALRRVKFEELFYFQMQLQVLKRE 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + I+ +     +  +++PF  T +QE ++ +IL D+     M R+LQGDVGSG
Sbjct: 226 TKAVSNGLKIDWQSDAVAEKKQSLPFELTSAQERSLTEILHDLRSPGHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A RR
Sbjct: 286 KTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I +GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P VL+
Sbjct: 344 ETLAAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ LK  L +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGAQI 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G   
Sbjct: 464 YFISPLIEESEALDLKNAIALEEELTAYFGQQAKVALLHGKMKSEEKEAIMQDFKEGQTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYN 691
             I T DP+  +     + I L+L + +
Sbjct: 643 SQI-TADPNWRTDPSWHL-IALHLDKRD 668


>gi|325688114|gb|EGD30133.1| DNA helicase RecG [Streptococcus sanguinis SK72]
          Length = 671

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 242/688 (35%), Positives = 386/688 (56%), Gaps = 27/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D      + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL------GLETLQDLLLYFPFRYEDF-KSKNVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L      G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLAEKIEVGVNIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    +    +D     ++ VY L  G+S     K+I  A  +    +L 
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S  EA   +H P+   D+     A  R+ ++EL   Q+ L +++++
Sbjct: 169 ENLPQPLLERYQLVSRVEAVRAMHFPKDLTDY---KQALRRVKFEELFYFQMQLQVLKRE 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVGSG
Sbjct: 226 SKAVSNGLKIDWQSDAVAEKKQSLPFELTSAQERSLAEILQDLRSPGHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A RR
Sbjct: 286 KTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I  GQ  +I+GTHAL Q+ ++YY L LVI+DEQHRFGV+QR  L +K   P VL+
Sbjct: 344 ETLSAIEKGQVDMIVGTHALIQEGVRYYALGLVIIDEQHRFGVEQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   ++  V++ LK  L +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLGVVLDWLKKELHKGAQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G   
Sbjct: 464 YFISPLIEESEALDLKNAIALEGELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGRTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGNKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYN 691
             I T DP+  +     + I L+L + +
Sbjct: 643 SQI-TADPNWRTDSNWHL-IALHLDKRD 668


>gi|332521832|ref|ZP_08398281.1| ATP-dependent DNA helicase RecG [Lacinutrix algicola 5H-3-7-4]
 gi|332042504|gb|EGI78706.1| ATP-dependent DNA helicase RecG [Lacinutrix algicola 5H-3-7-4]
          Length = 700

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 241/705 (34%), Positives = 380/705 (53%), Gaps = 24/705 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG   +  L K +         + DL+   P+ ++DR    KI++++   
Sbjct: 5   LQTPIDYLKGVGPNRADLLRKEL-----GIHTYQDLINLFPNRYLDRTKYYKINQLNPST 59

Query: 69  -IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V I G I+       ++ +       D TG + L++F R  + ++    +     + G
Sbjct: 60  AEVQIIGKITSFKEVAQKRGKRLVATFQDETGTMELVWF-RGQKWIRESLKKNVPYVIFG 118

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPT-----GLSVDLFKKIIVEAL-S 180
           K      +  M HP        + N    ++ +Y         G++  +  KI+      
Sbjct: 119 KTNLFGGKFNMPHPDIELKTEHEQNLRSTMQPIYPSTEKLSNKGITNRMMMKIMQNLFIE 178

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
                 E + K++L+     S +EA   IH P+     E    A+ RL ++EL   Q+ L
Sbjct: 179 TGGKFVETLSKNILENLKIISKSEALFNIHFPKSP---ELLFKAQFRLKFEELFYIQLQL 235

Query: 241 LLMRKQFKKEIG-IPINVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +L     K +I   P    G +       ++PF  T +Q+  +K+I  D+    +M R+L
Sbjct: 236 ILKNLIHKSKIKGFPFENVGALFNTFFKHHLPFELTGAQKRVLKEIRADLGSNAQMNRLL 295

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL++M  A++ G QA +MAP  IL+ QHY  +    +   I ++++TG+
Sbjct: 296 QGDVGSGKTIVALMSMLMALDNGFQACLMAPTEILSVQHYNGLVDLCKELNISIKLLTGS 355

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                RR+  + + +G+  I+IGTHAL +D +++  L L I+DEQHRFGV+QR KL +K 
Sbjct: 356 SKTLERREIHDMLENGELDILIGTHALLEDKVKFKNLGLAIIDEQHRFGVKQRSKLWKKN 415

Query: 419 TAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
           T P HVL+MTATPIPRTL ++  GD+DIS I E P GRK IKTV    +   +V + L+ 
Sbjct: 416 TFPPHVLVMTATPIPRTLAMSVYGDLDISIIDELPPGRKTIKTVHRYDSNRLKVFQFLRS 475

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVM 534
            + + ++ Y + P I+E  + +++ +++ + S+   F +    I+I+HG+M   DKE  M
Sbjct: 476 EIKKKRQVYIVYPLIQESAQMDYKDLMDGYESIARDFPAPEFQISIVHGKMKPADKEFEM 535

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E S CIL
Sbjct: 536 QRFIKGQTQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGAEQSYCIL 595

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +    LS+NS  R+  +  T DGF IAE DLK R  G+I+G +QSG+    IA     + 
Sbjct: 596 MTSHKLSENSKKRIETMVRTNDGFEIAEVDLKLRGPGDIMGTQQSGILNLRIADIVKDND 655

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQS-IRILLYLYQYNEAFQFIR 698
           +L+ AR  AK +L +DP L        +     + +Y   + +I 
Sbjct: 656 ILQHARYYAKKVLEKDPSLGHPENAVILETYRQMSKYKNIWNYIS 700


>gi|324993503|gb|EGC25423.1| DNA helicase RecG [Streptococcus sanguinis SK405]
          Length = 671

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 241/688 (35%), Positives = 388/688 (56%), Gaps = 27/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D      + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL------GLETLQDLLLYFPFRYEDF-KSKNVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    +    +D     ++ VY L  G+S     K+I  A  +    +L 
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S  EA   +H P+   D+     A  R+ ++EL   Q+ L +++++
Sbjct: 169 ENLPQPLLERYQLVSRVEAVRAMHFPKDLADY---KQALRRVKFEELFYFQMQLQVLKRE 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVGSG
Sbjct: 226 TKAVSNGLKIDWQLDAVAEKKKSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A RR
Sbjct: 286 KTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I +GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P VL+
Sbjct: 344 ETLAAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   ++  V++ LK  L +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLGVVLDWLKKELHKGAQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G   
Sbjct: 464 YFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGRTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYN 691
             I T DP+  +     + I L+L + +
Sbjct: 643 SQI-TADPNWRTDPSWHL-IALHLDKRD 668


>gi|312877022|ref|ZP_07736995.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311796163|gb|EFR12519.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 679

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 239/664 (35%), Positives = 380/664 (57%), Gaps = 17/664 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +N L   +   +GVG+       K+         +  DLL++ P  ++D     KI E+ 
Sbjct: 1   MNVLEKDIRFLKGVGENREKLFKKL------GIKKAEDLLWHIPRKYLDYSRLKKIRELC 54

Query: 66  EERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           +  I +    ++      + +  +  KI + D TG +T ++F +  + +KNV  EG    
Sbjct: 55  DGEIESFVAKVAGKPVEIETRSVKVIKIPVEDSTGVVTTVWFNQ--DYIKNVLKEGEIFC 112

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183
            +GKI++    I + +P +  ++ Q ++   I  VY+   GLS  + + I+   L ++  
Sbjct: 113 FSGKIERKGFYIEVKNPEFEKYDQQLLHTGRIVPVYNSTEGLSQKVIRNIVNNLLHQVDG 172

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           +L + I   + QK +   I  A   IH P      E     R+RL ++E    Q++LLL+
Sbjct: 173 MLIDIIPPYIRQKYNLSDINFAIKNIHFPENKLSLELA---RKRLVFEEFYLFQLSLLLL 229

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++  +K  GI I       ++  + +PF  T++Q+  + +I QD+    +M R++QGDVG
Sbjct: 230 KENIEKNEGIKIENAQSSLKEFEKLLPFELTEAQKRVLAEIAQDLESTKQMNRLIQGDVG 289

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
            GKT+VAL +  A ++AG Q  +MAP  +LA QHY   KKY  N +  V ++ G+ P+  
Sbjct: 290 CGKTVVALASAYATIKAGYQVALMAPTEVLALQHYNECKKYFGN-KFNVRLLIGSTPKKE 348

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +   L+ + HG   ++IGTHAL QD +++  L L I DEQHRFGV QR++LT+K ++P++
Sbjct: 349 KEIILKELEHGLCKMVIGTHALIQDEVKFKNLGLAITDEQHRFGVIQRVELTKKGSSPNI 408

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL L   GD+DIS I + P GRK I T  +  +    V   +K  L EG+
Sbjct: 409 LVMTATPIPRTLSLVLYGDLDISIIDQLPPGRKKILTYAVDESFRQRVYNFIKKQLDEGR 468

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           + YWICP IEE +  N +S VE   SL E F    ++  +HG++S  +++ +++ FK+G 
Sbjct: 469 QVYWICPLIEESETLNAKSAVEFAKSLKEGFFKDYNVGCLHGKLSAKERDKILNDFKDGH 528

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTV+EVGI+V +A++++IENAE FGLAQLHQLRGRVGRGE  S CIL ++   S
Sbjct: 529 IHILVSTTVVEVGINVPNATVMVIENAERFGLAQLHQLRGRVGRGEHQSYCIL-FNQSDS 587

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + +  R+  +  +++GF IAE DLK R  G++ G KQ G+  F +A       +L+ AR 
Sbjct: 588 EIAKKRMIAITRSQNGFEIAEMDLKLRGPGDLFGTKQHGIMNFKVADIINDMDILKQARI 647

Query: 662 DAKH 665
            A+ 
Sbjct: 648 AAEE 651


>gi|145300961|ref|YP_001143802.1| ATP-dependent DNA helicase RecG [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853733|gb|ABO92054.1| ATP-dependent DNA helicase RecG [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 690

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 256/695 (36%), Positives = 378/695 (54%), Gaps = 25/695 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            L + +GVG K    L ++            DLLF+ P  + DR     I ++       
Sbjct: 8   SLDSLKGVGSKMQEKLERL------GLATVQDLLFHLPLRYEDRTQVWPIGDLPPGLHGA 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I       + +RR     ++DGTG +TL FF   T   KN   +GR I   G+++ 
Sbjct: 62  VEGEIQDTQLV-MGRRRMLVCRISDGTGTLTLRFFNF-TAAQKNSLGQGRLIRCFGEVRP 119

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
            K  + M HP Y     +        +  VY    GL     + +  +AL++L +  + E
Sbjct: 120 GKYGLEMAHPEYKLLGEEQAGQTEEALTPVYPTTEGLRQLTLRSLTDQALAQLDLYGVEE 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++    +A A  ++H P  +           PA++RL  +ELLA  +++L +
Sbjct: 180 LLPAGLYPQQ--IDLAAALRLLHRPPPSVALALLESGQHPAQQRLVLEELLAHNLSVLKV 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q + ++   +     + +++L  +PF PT +Q   + +I QD+ +   M+R++QGDVG
Sbjct: 238 RAQAQTQLARALKPAPALVKQLLEALPFKPTGAQNRVVAEINQDLQRSYPMMRLVQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+  G Q  +MAP  +LA+QH      + +   I V  + G      
Sbjct: 298 SGKTLVAALAALQAIGNGCQVGLMAPTELLAEQHAINFANWLEPLGIGVGWLAGKQKGKA 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R   L  IA G   +++GTHA+FQ+ + + +L LVI+DEQHRFGV QRL L +K      
Sbjct: 358 RETQLAAIADGSVKMVVGTHAIFQEQVVFQRLALVIIDEQHRFGVHQRLALREKGEREGV 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T+  D+D S I E P GR PI TV +P +R  +VIER+K+  
Sbjct: 418 HPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPITTVALPDSRRPDVIERVKLAC 477

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            EGK+AYW+C  IEE +    ++  +    L        I ++HGRM  ++K+ VM+ FK
Sbjct: 478 EEGKQAYWVCTLIEESEVLECQAAEDTAAELQNQLPGLHIGLVHGRMRPVEKQRVMEEFK 537

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH 
Sbjct: 538 AGILQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHA 597

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLSK + +RL VL+ T DGFLIA+ DL+ R  GE+LG +Q+G+    IA       L+  
Sbjct: 598 PLSKTAQSRLGVLRETNDGFLIAQRDLELRGPGELLGTRQTGLADLKIADLVRDQPLIPQ 657

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            +K A+ ++ + P       +  R L     Y+ A
Sbjct: 658 VQKMARFLMDRHPAHVEPLIR--RWLGLRDHYSNA 690


>gi|148654135|ref|YP_001281228.1| ATP-dependent DNA helicase RecG [Psychrobacter sp. PRwf-1]
 gi|148573219|gb|ABQ95278.1| ATP-dependent DNA helicase RecG [Psychrobacter sp. PRwf-1]
          Length = 747

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 263/724 (36%), Positives = 389/724 (53%), Gaps = 62/724 (8%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+    GVG K    L ++        +R  DLL + P  + DR     IS++ + +   
Sbjct: 26  PVQVLAGVGSKIEGQLEQL------GVSRLFDLLLHLPRDYEDRSRLVNISDLQDGQSAL 79

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G ++   +    KR    +++ D TG I L FF     ++      G ++ + G++K 
Sbjct: 80  IEGQVTYVDN----KRGGMTVVIEDATGAIQLRFFKVYASLV-QTMTLGTRLRLFGEVKI 134

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LP-- 186
            +  + M HP Y +      V    ++ +Y    GL  +  + ++  AL  +    LP  
Sbjct: 135 SRYGMQMAHPEYNMVTAGAPVVNTGLQPIYPAVKGLHQNKLRTLVKLALQTVHQQGLPLT 194

Query: 187 -----EW-----IEKDL-LQKKSFPS---------------------IAEAFNIIHNPRK 214
                +W     +   L       PS                     + EA  +IH P  
Sbjct: 195 VFDEADWQAVNHLPAPLPTNSYGLPSSAASQQTSPSPNSAPSWQHLTLFEALTLIHTPPM 254

Query: 215 AKDF-----------EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263
             D              T PA +RL  +EL A Q+++L  RKQ  +      + +  +A+
Sbjct: 255 HTDITLQAAQLEQLKARTHPACQRLIVEELTAHQLSMLYRRKQLHQHKAPKCDGDSPLAE 314

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           K+L N+PFS T +Q+  IK+I  DM+    MLR++QGDVG+GKTLVA +A   A+++G Q
Sbjct: 315 KLLANLPFSLTGAQDRVIKEITSDMATSIPMLRLVQGDVGAGKTLVAALAACYALDSGWQ 374

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             +MAP  ILA+QH    K + +   I V  + G      RR+AL  +A  +  I++GTH
Sbjct: 375 VAVMAPTEILAEQHLINFKAWFEPLGIGVGWLAGKQTAKQRREALADVAENEVQIVVGTH 434

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSL 440
           ALFQD++ + KL L I+DEQHRFGV+QR+ LT K    + PH L+MTATPIPRTL +++ 
Sbjct: 435 ALFQDAVVFAKLGLAIIDEQHRFGVEQRMALTNKGVANSTPHQLIMTATPIPRTLAMSAY 494

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           GD+D S I E P GR PI TV I   R DEVIER+     EGK+AYW+CP +++    N 
Sbjct: 495 GDMDTSIIDELPPGRTPITTVTIDRARRDEVIERIAANCKEGKQAYWVCPLVDDSSTLNA 554

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           ++    F  L E     I ++HG+M   +K+ +M +FKN    LL+ATTVIEVG+DV +A
Sbjct: 555 QAAEATFADLSERLDIRIGMVHGKMKSKEKQEIMAAFKNAELDLLVATTVIEVGVDVPNA 614

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           S+++IENAE  GL+QLHQLRGRVGRG   S C+LLY  PLS+    RL+VL+++ DGF+I
Sbjct: 615 SLMVIENAERLGLSQLHQLRGRVGRGSTKSFCVLLYQTPLSETGIERLNVLRDSNDGFVI 674

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
           A++DL+ R  GE+LG +Q+G   + ++     ++LL IA   AK ++  D   T V    
Sbjct: 675 AQKDLQLRGPGELLGKRQTGNIGYYVSDLTRDENLLMIASHLAKRLINDDARKTEVTQLI 734

Query: 681 IRIL 684
            R +
Sbjct: 735 HRWM 738


>gi|170288540|ref|YP_001738778.1| ATP-dependent DNA helicase RecG [Thermotoga sp. RQ2]
 gi|170176043|gb|ACB09095.1| ATP-dependent DNA helicase RecG [Thermotoga sp. RQ2]
          Length = 763

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 236/663 (35%), Positives = 363/663 (54%), Gaps = 17/663 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG      L K+            DLL + P  + DR    K++++    
Sbjct: 96  LSTDIQYAKGVGPNRKKKLKKL------GIETLRDLLEFFPRDYEDRRKIFKLNDLLPGE 149

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE--GRKITVT 126
            VT  G I    + + Q       +L+DG   + L +F +  E L+    +  G+++ VT
Sbjct: 150 KVTTQGKIVSVETKRFQNMNILTAVLSDGLVHVPLKWFNQ--EYLQTYLKQLTGKEVFVT 207

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VL 185
           G +K           +      +      I  +Y L +G+S    +KI  E +  L   L
Sbjct: 208 GTVKSNAYTGQYEIHNAEVTPKEGEYVRRILPIYRLTSGISQKQMRKIFEENIPSLCCSL 267

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E + + +L+K+    + +A+  +H P+     E    ARERLAY+EL   Q+A   +RK
Sbjct: 268 KETLPERILEKRKLLGVKDAYYGMHFPKTFYHLE---KARERLAYEELFVLQLAFQKIRK 324

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + +K  GIP  +EGK+A++ ++++PF  T +Q+ A ++I  DM  +  M R+LQGDVGSG
Sbjct: 325 EREKHGGIPKKIEGKLAEEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSG 384

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +A+    EAG Q   M P  ILA QHY    +      I V ++ G    + + 
Sbjct: 385 KTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKE 444

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           K    + +GQ  ++IGTHAL Q+ + +  L LVI+DEQHRFGV+QR  L  K      L+
Sbjct: 445 KIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQREALMNKGKMVDTLV 504

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPR++ L   GD+D++ I E P GRK ++T+++P++R++E+ E ++  + +G +A
Sbjct: 505 MSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEIYEFVRQEVMKGGQA 564

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           + + P IEE  + N +S VE +  L +       + ++HGR+S  +K+ VM  F  G   
Sbjct: 565 FIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD 624

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVGIDV  A++++IEN E FGLAQLHQLRGRVGRG + + C L+    + + 
Sbjct: 625 ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVG-DVGEE 683

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL       DGF IAE DLK R  GE  G+KQ G+  F +A       LLE AR+D 
Sbjct: 684 AMERLRFFTLNTDGFKIAEYDLKTRGPGEFFGVKQHGLSGFKVADLYRDLKLLEWAREDV 743

Query: 664 KHI 666
           + I
Sbjct: 744 QEI 746


>gi|114797135|ref|YP_760687.1| putative ATP-dependent DNA helicase recG [Hyphomonas neptunium ATCC
           15444]
 gi|114737309|gb|ABI75434.1| putative ATP-dependent DNA helicase recG [Hyphomonas neptunium ATCC
           15444]
          Length = 692

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 273/688 (39%), Positives = 405/688 (58%), Gaps = 10/688 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR   L PLFA L T  GVG K +  L K++       T   DL+ + P  ++DR  R  
Sbjct: 1   MRDERLFPLFAGLETLTGVGPKMTPLLQKLV-----GGTTVWDLVLHLPDRWLDRRVRAN 55

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
             E     +VT+ G +  +       R P+++ L D TG +TL +F      +K+ F  G
Sbjct: 56  FDETVPGEVVTVKGEVHAYHQ-PFNDRSPHRVQLVDSTGFLTLSYFRADPRWMKSQFPIG 114

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+G++++ +    + HP ++   ++    P +E +YSL  GL+      + ++ALS
Sbjct: 115 ATRIVSGRVEEYRGERQITHPDFVVDPAKGEAPPAVEPIYSLSAGLTNRRVHTLALQALS 174

Query: 181 RLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            +P  LPEW +  L+ +K +P+  EA +  H+P K  D +  + ARERLAYDE LA + A
Sbjct: 175 LVPDDLPEWADPHLVAQKGWPAFKEALSWQHDP-KVYDEDRFALARERLAYDEALARESA 233

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             L +   ++     I        +++  +P+ PT +Q  A  DI  D+++   M R+LQ
Sbjct: 234 FALAQAARRQRPAPIIKAPPSAVNRLIDALPYRPTGAQMRAAADISSDVARGYPMRRLLQ 293

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKTLVA  A   A  AG Q+  MAP  +LA+Q Y+ +          V  ++G  
Sbjct: 294 GDVGAGKTLVAAFAAVEAAAAGFQSAFMAPTEVLARQQYDTLDALLSPLGYTVAALSGRD 353

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             + R   L  +A G   I+ GTHALFQ+++ +  L L+IVDEQHRFGV  R+KL  K+ 
Sbjct: 354 RGSAREATLMGLADGSIQIVAGTHALFQEAVNFRNLGLIIVDEQHRFGVSDRMKLAGKSE 413

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH+L+M+ATPIPRTL     GD+D+S + EKP GRKP++T  +P  R+++VIE +   L
Sbjct: 414 NPHMLVMSATPIPRTLAQAVHGDLDVSILDEKPPGRKPVETRAVPDTRLEDVIEAIGRAL 473

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G++A+W+CP+++   E +  S V R  +L E       ++HGR+   +K++ ++ F+ 
Sbjct: 474 KRGERAFWVCPRVD--IEDDDSSAVVRHAALEEELHVKAGLVHGRLKASEKDAALEDFRT 531

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L+ATTVIEVG+DV +A+I++IE AE FGLAQLHQLRGRVGRG++ S C+LLY PP
Sbjct: 532 GRTRILVATTVIEVGVDVPEATIMVIERAEGFGLAQLHQLRGRVGRGDKPSFCLLLYRPP 591

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L   +  RL  L+ TEDGF IAE D + R  G++LG++Q+GM  + I     H +LLEIA
Sbjct: 592 LGDTARERLDTLRRTEDGFEIAEADFRLRGAGDVLGVRQAGMTDYRIIDLAKHAALLEIA 651

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYL 687
           RKDA+ +LT DPD    R QS+RI   L
Sbjct: 652 RKDAEAVLTGDPDRKGERWQSLRIAREL 679


>gi|324995182|gb|EGC27094.1| DNA helicase RecG [Streptococcus sanguinis SK678]
 gi|327469130|gb|EGF14602.1| DNA helicase RecG [Streptococcus sanguinis SK330]
 gi|327473512|gb|EGF18932.1| DNA helicase RecG [Streptococcus sanguinis SK408]
          Length = 671

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 240/688 (34%), Positives = 388/688 (56%), Gaps = 27/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D      + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL------GLETLQDLLLYFPFRYEDF-KSKNVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  + V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    +    +D     ++ VY L  G+S     K+I  A  +    +L 
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S  EA   +H P+   D+     A  R+ ++EL   Q+ L +++++
Sbjct: 169 ENLPQSLLERYQLVSRVEAVRAMHFPKDLTDY---KQALRRVKFEELFYFQMQLQVLKRE 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVGSG
Sbjct: 226 TKAVSNGLKIDWQLDAVAEKKKSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A RR
Sbjct: 286 KTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I +GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P VL+
Sbjct: 344 ETLAAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   ++  V++ LK  L +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLGVVLDWLKKELHKGAQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G   
Sbjct: 464 YFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGRTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYN 691
             I T DP+  +     + I L+L + +
Sbjct: 643 SQI-TADPNWRTDPSWHL-IALHLDKRD 668


>gi|148269855|ref|YP_001244315.1| ATP-dependent DNA helicase RecG [Thermotoga petrophila RKU-1]
 gi|147735399|gb|ABQ46739.1| ATP-dependent DNA helicase RecG [Thermotoga petrophila RKU-1]
          Length = 779

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 236/663 (35%), Positives = 362/663 (54%), Gaps = 17/663 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG      L K+            DLL + P  + DR    K++++    
Sbjct: 112 LSTDIQYAKGVGPNRKKKLKKL------GIETLRDLLEFFPRDYEDRRKIFKLNDLLPGE 165

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE--GRKITVT 126
            VT  G I    + + Q       +L+DG   + L +F +  E L+    +  G+++ VT
Sbjct: 166 KVTTQGKIVSVETKRFQNMNILTAVLSDGLVHVLLKWFNQ--EYLQTYLKQLTGKEVFVT 223

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VL 185
           G +K           +      +      I  +Y L +G+S    +KI  E +  L   L
Sbjct: 224 GTVKSNAYTGQYEIHNAEVTPKEGEYARRILPIYRLTSGISQKQMRKIFEENIPSLCCSL 283

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E + + +L+K+    + +A+  +H P+     E    ARERLAY+EL   Q+A   +RK
Sbjct: 284 KETLPERILEKRKLLGVKDAYYGMHFPKTFYHLE---KARERLAYEELFVLQLAFQKIRK 340

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + +K  GIP  +EGK+A++ ++++PF  T SQ+ A ++I  DM  +  M R+LQGDVGSG
Sbjct: 341 EREKHGGIPKKIEGKLAEEFIKSLPFKLTNSQKRAHQEIRNDMISEKPMNRLLQGDVGSG 400

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +A+    EAG Q   M P  ILA QHY    +      I V ++ G    + + 
Sbjct: 401 KTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTIESFSKFNIHVALLIGATTPSEKE 460

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           K    + +GQ  ++IGTHAL Q+ + +  L LVI+DEQHRFGV+QR  L  K      L+
Sbjct: 461 KIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQREALMNKGKMVDTLV 520

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPR++ L   GD+D++ I E P GRK ++T+++P++R++E+ E ++  + +G +A
Sbjct: 521 MSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEIYEFVRQEVMKGGQA 580

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           + + P IEE  + N +S VE +  L +       + ++HGR+S  +K+ VM  F  G   
Sbjct: 581 FIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD 640

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++T VIEVGIDV  A++++IEN E FGLAQLHQLRGRVGRG + + C L+    + + 
Sbjct: 641 ILVSTMVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVG-DVGEE 699

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL       DGF IAE DLK R  GE  G+KQ G+  F +A       LLE AR+D 
Sbjct: 700 AMERLRFFTLNTDGFKIAEYDLKTRGPGEFFGVKQHGLSGFKVADLYRDLKLLEWAREDV 759

Query: 664 KHI 666
           + I
Sbjct: 760 QEI 762


>gi|312135040|ref|YP_004002378.1| ATP-dependent DNA helicase recg [Caldicellulosiruptor owensensis
           OL]
 gi|311775091|gb|ADQ04578.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor owensensis
           OL]
          Length = 679

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 240/664 (36%), Positives = 380/664 (57%), Gaps = 17/664 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +N L   +   +GVG+       K+         +  DLL++ P  ++D     KI E+ 
Sbjct: 1   MNVLEKDIRFLKGVGENREKLFKKL------GIKKAEDLLWHIPRKYLDYSKLKKIRELC 54

Query: 66  EERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           +  + +    ++      + +  +  KI + DGTG +T ++F +  + +KNV  EG    
Sbjct: 55  DGEVESFIAKVAGKPVEIETKSIKIIKIPVEDGTGVVTTVWFNQ--DYIKNVLKEGEIFC 112

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183
            +GKI++    I + +P +  ++   ++   I  VY+   GLS  + + II   L+++  
Sbjct: 113 FSGKIERKGFYIEVKNPEFEKYDQHLLHTGRIVPVYNSTEGLSQKVIRNIINNLLNQIDG 172

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            L + I   + QK +   I  A   IH P      E     R+RL ++E    Q+ALLL+
Sbjct: 173 ALEDIIPAYIKQKYNLKDINFAIKNIHFPENKLSLELA---RKRLVFEEFYLLQLALLLL 229

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++  +K  G+ I       ++  + +PF  T++Q+  + +I QD+    +M R++QGDVG
Sbjct: 230 KENIEKNEGLKIENAQNSLEEFEKFLPFELTEAQKRVLAEIAQDLESTKQMNRLIQGDVG 289

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
            GKT+VAL +  A ++AG Q  +MAP  +LA QHY   KKY  N +  V ++ G+ P+  
Sbjct: 290 CGKTVVALASAYATIKAGYQVALMAPTEVLALQHYNECKKYFGN-KFNVRLLIGSTPKKE 348

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +   L+ + HG   ++IGTHAL QD +++  L L I DEQHRFGV QR++LT+K ++P++
Sbjct: 349 KEIILKELEHGLCKMVIGTHALIQDEVKFKNLGLAITDEQHRFGVIQRVELTKKGSSPNI 408

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL L   GD+DIS I + P GRK I T  +  +    V   +K  L EG+
Sbjct: 409 LVMTATPIPRTLSLVLYGDLDISIIDQLPPGRKKILTYAVDESFRQRVYNFIKKQLDEGR 468

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           + YWICP IEE +  N +S VE   SL E F    +I  +HG++S  +++ +++ FK+G 
Sbjct: 469 QVYWICPLIEESETLNAKSAVEFAKSLKEGFFKDYNIGCLHGKLSAKERDKILNDFKDGY 528

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTV+EVGI+V +A++++IENAE FGLAQLHQLRGRVGRGE  S CIL ++   S
Sbjct: 529 IHILVSTTVVEVGINVPNATVMVIENAERFGLAQLHQLRGRVGRGEHQSYCIL-FNQSDS 587

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + +  R+  +  +++GF IAE DLK R  G++ G KQ G+  F +A       +L+ AR 
Sbjct: 588 EIAKKRMIAITRSQNGFEIAEMDLKLRGPGDLFGTKQHGVMNFKVADIINDMDILKQARI 647

Query: 662 DAKH 665
            A+ 
Sbjct: 648 AAEE 651


>gi|147678092|ref|YP_001212307.1| ATP-dependent DNA helicase RecG [Pelotomaculum thermopropionicum
           SI]
 gi|146274189|dbj|BAF59938.1| RecG-like helicase [Pelotomaculum thermopropionicum SI]
          Length = 690

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 235/689 (34%), Positives = 374/689 (54%), Gaps = 29/689 (4%)

Query: 5   FLNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
             N  FA P+   + VG++ +  L K+            DLL++ P  + DR        
Sbjct: 1   MPNEFFAKPVQYLKMVGQRRASALQKL------GIATVKDLLYHFPRRYDDRTVLRPAWA 54

Query: 64  ISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEG 120
            ++  + T+ G +        + RR   I    L+DG+G    ++F +    +K     G
Sbjct: 55  CAQGEVATVGGTVLAAQDL--KPRRGLTITKLALHDGSGTFYAVWFNQ--PFIKKNLPPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
            ++ VTGK++K    + +    Y   + +D ++   +  VY L   L+  + + ++  AL
Sbjct: 111 TRVFVTGKVEKGYGAVTVAVEEYEADDGRDRLSTGRLVPVYPLAGRLTQRMLRAMVKSAL 170

Query: 180 SRLPVLP-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
                   +++ + LL+K + P +  A + +H P+     E    AR R  ++EL   Q+
Sbjct: 171 DEAKGKEADFLPESLLKKFNLPCLGTALSAVHFPQN---MEEAGAARRRFIFEELFLFQL 227

Query: 239 ALLLMRK----QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           AL + RK    + K    +P   EGK+ Q    ++P+  T  QE   K+I  DM     M
Sbjct: 228 ALAMRRKDISGRRKLHTYLP---EGKLTQAFKSSLPYRLTGEQEKVWKEISNDMDSPVPM 284

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVG+GKT+++ +A+  AVE+G Q  +MAP  ILA+QHY  ++ Y     +   +
Sbjct: 285 HRLLQGDVGAGKTVISTLALLKAVESGLQGALMAPTEILAEQHYLGMRNYLGPIGVEAGL 344

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG   +  R++ LERI  G   +++GTHAL Q+ + +  L LV+VDEQHRFGV+QR  L
Sbjct: 345 LTGGTGRKKRKELLERIRSGDLKLVVGTHALLQEGVDFKNLGLVVVDEQHRFGVRQRATL 404

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K   P  L+MTATPIPRT+ +T  GD+DIS I   P GR+P+KT  +    + +    
Sbjct: 405 QNKGLYPDTLVMTATPIPRTMAMTLYGDLDISIINGLPPGRQPVKTYAVVPAALPKAYHL 464

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH--EHFTSSIAIIHGRMSDIDKES 532
           ++  +  G++AY +CP +EE ++ +  + VE    L   E     + ++HG+M   +K+ 
Sbjct: 465 VREQVRRGRQAYIVCPLVEESEKVDLEAAVELAEKLAAGEFRDCRLGLLHGQMKAEEKDK 524

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM SF+ G  ++L+ TTVIEVG+DV +A+++II +A+ FGLAQLHQLRGRVGRG   S C
Sbjct: 525 VMTSFRQGEIQILVTTTVIEVGVDVPNATVMIILDADRFGLAQLHQLRGRVGRGSHQSYC 584

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           IL+  P  ++    RL  +    DGF +AEEDL+ R  GE  G +QSG+P+F IA     
Sbjct: 585 ILVADPK-TEEGRARLKAMVRISDGFALAEEDLRLRGPGEFCGTRQSGLPEFKIADLLRD 643

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             +L+ AR++A   + +DP L +   + +
Sbjct: 644 WKVLQAARQEALAWVEEDPHLKNPVSRML 672


>gi|77361708|ref|YP_341283.1| ATP-dependent DNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76876619|emb|CAI87841.1| ATP-dependent DNA helicase recG [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 673

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 255/664 (38%), Positives = 382/664 (57%), Gaps = 26/664 (3%)

Query: 23  YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF 82
            +  L K+        +   D+LF+ P  + DR     I+E+S    V++   I + S  
Sbjct: 1   MAERLLKL------GISTVQDMLFHLPLRYEDRTRLYTINELSLHSHVSVEATI-ETSQI 53

Query: 83  QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142
              KRR     +NDGTG +TL FF   T   KN    G+ I   G++++ +    M HP 
Sbjct: 54  TFGKRRMLVCQINDGTGRLTLRFFNF-TAAQKNALSAGKIIRCFGEVRRGRVGFEMNHPE 112

Query: 143 YIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200
           Y   ++  +      +  VYS   GL     + +  +A++   +L ++  ++LL  +  P
Sbjct: 113 YSISDTPNEQPTATTLTPVYSTTEGLKQLSIRALSDQAIN---LLQKYSVEELLPAQWQP 169

Query: 201 S---IAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
           S   +++A  ++H P K  D     + T PA++RL ++ELLA  ++LL +R+Q ++   +
Sbjct: 170 SNLGLSDALLLLHRPPKDIDVIALEQGTHPAQQRLVFEELLAQNLSLLKIRQQGQQVKAV 229

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            +N    +  + L  +PF PT +Q   + +I  D+ Q   M+R++QGDVGSGKTLVA ++
Sbjct: 230 SLNSNNALESQFLAQLPFDPTNAQSRVVAEIKGDLQQPYPMMRLVQGDVGSGKTLVAALS 289

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
              A+  G Q  +MAP  IL++QH      +     I V  + G      R   LE+IA 
Sbjct: 290 ALTAIAQGFQVALMAPTEILSEQHGINFNNWFNQLGITVAWLGGKTKGRERVATLEKIAS 349

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLMTAT 429
           G+A +I+GTHALFQD ++++ L+L+I+DEQHRFGV QRL L +K       PH L+MTAT
Sbjct: 350 GEAQMIVGTHALFQDEVKFHNLVLIIIDEQHRFGVHQRLSLREKGRFGDCYPHQLVMTAT 409

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE-GKKAYWI 488
           PIPRTL +T+  D++ S I E P GR PI TV +P  R  ++I+R+K+   E G++ YW+
Sbjct: 410 PIPRTLAMTAYADLETSVIDELPPGRTPITTVALPDTRRGDIIKRVKLACHEQGRQVYWV 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           C  I+E +    ++  +    L E     ++++IHGRM   +K+++M  FK G   +L+A
Sbjct: 470 CTLIDESEVLQCQAAEDSAQQLKEALPELNVSLIHGRMKATEKQAIMSEFKAGNIHVLVA 529

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG+DV +AS+IIIEN E  GLAQLHQLRGRVGRG   S C+LLYH PLS  +  R
Sbjct: 530 TTVIEVGVDVPNASLIIIENPERLGLAQLHQLRGRVGRGATASHCVLLYHAPLSHTAQKR 589

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L VL+++ DGF+IAE DL+ R  GE+LG KQ+G+ +F IA        L   R  A+ +L
Sbjct: 590 LGVLRDSNDGFVIAERDLEIRGPGEVLGTKQTGLAEFKIADLTRDKHTLNQVRPIAQQML 649

Query: 668 TQDP 671
            Q P
Sbjct: 650 IQHP 653


>gi|332363341|gb|EGJ41126.1| DNA helicase RecG [Streptococcus sanguinis SK49]
          Length = 671

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 239/688 (34%), Positives = 385/688 (55%), Gaps = 27/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D      + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL------GLETLQDLLLYFPFRYEDF-KSKNVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    +    +D     ++ VY L  G+S     K+I  A  +    +L 
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQANLVKLIKTAFDQGLDLLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S  EA   +H P+   D+     A  R+ ++EL   Q+ L +++++
Sbjct: 169 ENLPQSLLERYQLVSRVEAVRAMHFPKDLADY---KQALRRVKFEELFYFQMQLQVLKRE 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVGSG
Sbjct: 226 TKAVSNGLKIDWQSDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +      +   ++TG M    RR
Sbjct: 286 KTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLFPELNL--ALLTGGMKATERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I +GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P VL+
Sbjct: 344 ETLAAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   ++  V++ LK  L +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLGVVLDWLKKELHKGAQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G   
Sbjct: 464 YFISPLIEESEALDLKNAIALEGELTAYFGHQAQVALLHGKMKSEEKEAIMQDFKEGRTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
             +R+ ++    DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKSRMKIMTEMTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYN 691
             I T DP+  +     + I L+L + +
Sbjct: 643 SQI-TADPNWRTDPSWHL-IALHLDKRD 668


>gi|189462953|ref|ZP_03011738.1| hypothetical protein BACCOP_03655 [Bacteroides coprocola DSM 17136]
 gi|189430235|gb|EDU99219.1| hypothetical protein BACCOP_03655 [Bacteroides coprocola DSM 17136]
          Length = 699

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 237/690 (34%), Positives = 374/690 (54%), Gaps = 23/690 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +   +GVG + +  L+K +     N   F DLL Y P  ++DR     I EI
Sbjct: 1   MFDLSTRDIKYLQGVGPQRAAILNKEL-----NIYSFRDLLCYFPYKYVDRSRLYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G +    +    ++R      +DGTG + L++F +  + +   +    + 
Sbjct: 56  DGNMPYIQLKGKVLSFETMGEGRQRRLVGHFSDGTGIVDLVWF-QGLKFIMGKYKANEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            V GK      RI + HP         ++   ++  Y+         L+    +K++   
Sbjct: 115 IVFGKPTIFNGRINIAHPDIDPAQELTLSTMGLQPYYNTTEKMKRSNLNSHALEKLMKNL 174

Query: 179 LSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
              L   ++ E +   L+       + +A   IH P+     +    A+ RL ++EL   
Sbjct: 175 FGALQKEIIEETLSPQLVDHYRLMPLTDALYNIHFPQNP---DLLRRAQYRLKFEELFYV 231

Query: 237 QIALLLM-RKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRM 294
           Q+ +L   +++  K  G+     G+I      +N+PF  T +Q+  IK++ +DM    +M
Sbjct: 232 QLNILRYTKERRNKFRGLVFGKVGEIFNTFYSQNLPFQLTGAQKRVIKEMRRDMGSGRQM 291

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVGSGKTLVAL+ M  A++ G QA +MAP  ILA QHYE I ++     + VE+
Sbjct: 292 NRLLQGDVGSGKTLVALMTMLIALDNGYQACMMAPTEILATQHYETICRFLAGMNVRVEL 351

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG +    R   L+ +  G  HI+IGTHA+ +D++ +  L LV++DEQHRFGV QR KL
Sbjct: 352 LTGTVKGKRRETILKDLVTGDVHILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRAKL 411

Query: 415 TQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             K T  PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+TV    NR   +  
Sbjct: 412 WAKNTCPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTVHQFDNRRASMYA 471

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
            ++  + EG++AY + P I+E ++ + +++ + +  + E F    ++ +HG+M   +K+ 
Sbjct: 472 FIRKQIQEGRQAYIVYPLIQESEKMDIKNLEDGYMHICEEFPEYKVSKVHGKMKPAEKDE 531

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M  F     ++++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S C
Sbjct: 532 EMQRFLANETQIMVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYC 591

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPEL 651
           IL+    L++ +  R+ ++  T DGF IAE DLK R  G++ G +QSG+     IA    
Sbjct: 592 ILVTGYKLTEETRKRIEIMVQTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIAR 651

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
              LL+  R+ A+H+L  DP+        I
Sbjct: 652 DGQLLQFVREIAEHLLDADPNGERPENAII 681


>gi|262377324|ref|ZP_06070548.1| ATP-dependent DNA helicase RecG [Acinetobacter lwoffii SH145]
 gi|262307777|gb|EEY88916.1| ATP-dependent DNA helicase RecG [Acinetobacter lwoffii SH145]
          Length = 681

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 259/684 (37%), Positives = 394/684 (57%), Gaps = 23/684 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           A +   +GVG   +  L K+      N     DLLF+ P  + DR     ++++S  R  
Sbjct: 2   AAVHQLQGVGNAAASLLEKL------NIFNTDDLLFHLPRDYEDRSTIIPMNQLSVGRSY 55

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G +     F   KR+   +LL+D  G++TL  FY   + + +    G ++ + G+++
Sbjct: 56  LLEGIVKGV-DFPPGKRKSMAVLLDDDFGKVTLR-FYHIYKGITDRCKLGNRLRIFGEVR 113

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
                + M HP   +      +    + A+Y    GL+    +  I +AL++    LPE 
Sbjct: 114 VGARGLEMYHPELQVITEDTPLPQTQLTAIYPATEGLTQPKIRDYIQQALAQYSDHLPEL 173

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244
           +        +     +A   IH+P    +     + + PA++RL ++EL+A QI+LL  R
Sbjct: 174 LPAKFSNGYAL---KQALEYIHHPPVNANMLQLAQGSHPAQQRLIFEELVAHQISLLTRR 230

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              ++            A+++L ++ F  T +Q+   ++I+QD+     MLR++QGDVG+
Sbjct: 231 AFIQQVEAPSFAPSKTYAKQLLASLAFEMTGAQKRVSREIVQDLKSNKPMLRLVQGDVGA 290

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA +A   A+E G Q  +MAP  ILA+QHY   K++ +   + V  ++G      R
Sbjct: 291 GKTLVAGVAACHALEEGWQVALMAPTEILAEQHYLNFKRWFEPLGLNVAWLSGKQKGKAR 350

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ---KATAP 421
             A + I  G AH++IGTHALFQ+++++ KL LVI+DEQHRFGV QRL L        +P
Sbjct: 351 AAAEQVIRDGSAHLVIGTHALFQENVEFAKLGLVIIDEQHRFGVDQRLALRNKGLDGMSP 410

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+    +E
Sbjct: 411 HQLVMTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVLQRIASNCAE 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           GK+AYW+C  +E+ +  + ++    F  + E F + +I ++HG+M   +K++VM  FKN 
Sbjct: 471 GKQAYWVCTLVEQSETLDAQAAEATFAEIRERFPALNIGLVHGKMKADEKQAVMQQFKNN 530

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG + S C LLY  PL
Sbjct: 531 ELQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCALLYKHPL 590

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RL +++ T DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A 
Sbjct: 591 SQNCQERLRIMRETNDGFMIAEKDLELRGPGELLGTKQTGDMNFRVAKLERDDHLLNQAH 650

Query: 661 KDAKHILTQDPDLTSVRGQSIRIL 684
             A+ +L   PD      Q  R L
Sbjct: 651 YVAQQMLKDYPDQAEALLQ--RWL 672


>gi|254293940|ref|YP_003059963.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
 gi|254042471|gb|ACT59266.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
          Length = 687

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 274/696 (39%), Positives = 416/696 (59%), Gaps = 9/696 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L P F  L +  G+G K +  L +++          ++LL + P ++IDR  R  
Sbjct: 1   MRPEILFPFFKDLKSLPGIGPKTAPLLQRLV-----GGDTVLNLLLHLPINWIDRSVRDS 55

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
             E     I T+ G +     F  Q   P ++ L D TG +TL+FF  +   L+  F   
Sbjct: 56  FFETIVGEIATVRGVVDSV--FAGQGNAPTRVRLLDDTGFLTLVFFRAQPAWLQKQFPMN 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           +++ V+G I+    +  MVHP ++ + ++    P +E VY L  G++  L +K I  +L 
Sbjct: 114 QEMIVSGLIEDFNGQRQMVHPDHVCNPAKGEEPPEVEPVYRLTAGVTSRLLQKAISASLE 173

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            LP LPEWI++  L++K +PS  +A   +H P    D    + A ERLAYDE LA + AL
Sbjct: 174 NLPQLPEWIDQAFLEQKKWPSFVDALKQLHQPETL-DQPALNLAHERLAYDEALAREFAL 232

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +R   +K    PI         +L  + FSPT +Q  A KDI  D++++  M R+LQG
Sbjct: 233 NEIRLNRQKTPATPIPRHTHATNNLLEALKFSPTHAQLRAFKDIQTDLARELPMRRMLQG 292

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG+GKTLVA +A+A A  +G  +  M+P  +LA+Q    ++ + +      E +TG   
Sbjct: 293 DVGTGKTLVAALAIAQAAASGQFSAFMSPTEVLARQQATALQNFLKPIGYRCEALTGRDS 352

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           +  R++ L+ +A G+ H + GT ALFQ  +Q   L LVI+DEQHRFGV  RLKLT K  A
Sbjct: 353 KKRRKELLDAVAAGEIHCLSGTQALFQTDVQLPNLGLVIIDEQHRFGVADRLKLTSKGNA 412

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH+L+M+ATPIPR+L     GD+D   + EKP  RKPI T +    RI++V+  +     
Sbjct: 413 PHMLMMSATPIPRSLAAAINGDLDTCILDEKPQQRKPITTRVASEERIEDVMIAVAKAAD 472

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G++A+W+CP I+ +   +  SV+ R   L ++    +A++HG+M+  +K++ +D+F+ G
Sbjct: 473 RGERAFWVCPAIDSETAED-ASVIARKEILQKYVKHPVALVHGKMAPAEKDAALDAFRTG 531

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTV+EVGIDV +A+I++IE+AE FGLAQLHQLRGRVGRG++ SSC+LLY PPL
Sbjct: 532 EASVLVATTVVEVGIDVPEATIMVIEHAEGFGLAQLHQLRGRVGRGDKSSSCLLLYKPPL 591

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S++   RL+ L+ TEDGFLIAE D KQR  G++LG+KQSG+P F I     H  + ++ R
Sbjct: 592 SESGQKRLNTLRETEDGFLIAEADFKQRGPGDLLGLKQSGLPNFKIIDLTRHIEMFQLVR 651

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
            D K +L++ P+    R ++I +L  L++ + A ++
Sbjct: 652 NDVKQLLSEGPNSNPPRTEAISLLNELFKTDIAIKY 687


>gi|169827086|ref|YP_001697244.1| ATP-dependent DNA helicase RecG [Lysinibacillus sphaericus C3-41]
 gi|168991574|gb|ACA39114.1| ATP-dependent DNA helicase recG [Lysinibacillus sphaericus C3-41]
          Length = 688

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 247/698 (35%), Positives = 377/698 (54%), Gaps = 25/698 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L+ P++  +GVGK+ +  L  +            DLL+  P    D      +++  
Sbjct: 8   MTELYGPVNELKGVGKETAAHLESL------GINTIADLLWTFPHRHEDFR-LKDLAQTP 60

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKI 123
               VT+   + +  +     R   ++ +    G   + ++FF +    LK     G  I
Sbjct: 61  HNERVTVECKVEREPTILFLGRNKSRLQVTVLAGRHLVKVVFFNQG--YLKQKLVPGSII 118

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           TVTGK  + +  I               +    E VYSL   +    F+K + + L    
Sbjct: 119 TVTGKWDRGRQVINGTS----VSFGPKTDQVDFEPVYSLKGLIQQKRFRKYMRQVLDEYG 174

Query: 184 V-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             LP+ I +          I E    IH P+   D +    AR R AY+ELL  Q+ +  
Sbjct: 175 ANLPDAIPQHFQDSYKLLPIQEGLEGIHFPQ---DAQHAKQARRRFAYEELLNFQLRMQA 231

Query: 243 MRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +RK + + E G  I  +  + ++ +  +P+  T +Q+  + +I +D+ + +RM R+LQGD
Sbjct: 232 LRKVRKENEQGTVIQYDVHLLREFIAALPYELTNAQKRVVNEICKDLKEPHRMNRLLQGD 291

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA I + AAV AG Q  +MAP  ILA+QH E ++++ Q   + V +++G+   
Sbjct: 292 VGSGKTVVAAIGLYAAVSAGYQGALMAPTEILAEQHLENLQEWFQPFGVRVALLSGSTKM 351

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR  L  +A+G+  I+IGTHAL Q  + + KL  VI DEQHRFGV+QR  L  K   P
Sbjct: 352 KERRVILADLANGELDIVIGTHALIQPDVIFKKLGFVITDEQHRFGVEQRRILRDKGENP 411

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T  +   +   V+ +L+  L+ 
Sbjct: 412 DVLFMTATPIPRTLAITAFGEMDVSMIDEMPAGRKQIETHWMKKEQFGSVMSKLEGELAA 471

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKN 539
           G++AY ICP IEE  + + ++ VE +  L  +F     + ++HGR+S  +K++VM +F +
Sbjct: 472 GRQAYAICPLIEESDKLDVQNAVEIYEQLATYFNGRYQVGLMHGRLSADEKDAVMRAFSD 531

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+ ++L++TTV+EVG++V +A+ +I+ +AE FGLAQLHQLRGRVGRGE  S CILL  P 
Sbjct: 532 GSIQVLVSTTVVEVGVNVPNATFMIVYDAERFGLAQLHQLRGRVGRGEHQSYCILLADPK 591

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            S     R+  +  T DGF +AE+DL+ R  G+  G KQSG+P F +A       +LE A
Sbjct: 592 -SDEGKERMQSMTETNDGFRLAEKDLELRGPGDFFGRKQSGLPDFKVADLVHDYRILETA 650

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQ--YNEAFQ 695
           RKDA  +L  D        Q +R +L        E F 
Sbjct: 651 RKDATMMLETDAFWHDDDYQYLRKMLEDSGVMQGERFD 688


>gi|90023357|ref|YP_529184.1| ATP-dependent DNA helicase RecG [Saccharophagus degradans 2-40]
 gi|89952957|gb|ABD82972.1| ATP-dependent DNA helicase RecG [Saccharophagus degradans 2-40]
          Length = 695

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 244/700 (34%), Positives = 369/700 (52%), Gaps = 23/700 (3%)

Query: 7   NPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           N L A P++  +GVG K +  L+K+            DLLF+ P  ++DR     I ++ 
Sbjct: 6   NELAALPVTVVKGVGGKLAQTLAKL------GIHTLQDLLFHLPHRYVDRTRITPIGKLR 59

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
                 + G +   ++ Q  +RR     + D TG + + F++      K+    G  +  
Sbjct: 60  LNMAAVVQGCVVS-ANIQFGRRRSLACTIEDDTGSLMMRFYHFSAAQ-KDKLEPGTLVRC 117

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRL- 182
            G+ +     +   HP Y   +          +  VY L  G++    +K+  +AL  L 
Sbjct: 118 YGEPRMGTTGLEFYHPEYDIVDDPSAKPVEEALTPVYGLTEGITQPRIRKLAEQALLELK 177

Query: 183 -PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQ 237
                E++  ++ Q     S+A+A   +H P      E       P ++RLA++ELLA  
Sbjct: 178 HHNPAEYLPPEVGQMFGVDSLADALRYLHAPPPDAPVEQLIAGLHPYQQRLAFEELLAHY 237

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +A    R + + E    + V  +  Q  L  +PF+PT +Q   + DI +D+ +   MLR+
Sbjct: 238 LARQEARARAQAEASPVLRVAEQQRQAFLAQLPFTPTFAQTRVLGDINRDLQEGKPMLRM 297

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKTLVA +A    + AG Q  ++AP  ILA+QH+     + +     V  + G
Sbjct: 298 VQGDVGSGKTLVAALAALDVISAGYQVALVAPTEILAEQHFIAFSNWLEPLGFNVAWLVG 357

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ- 416
            +  + RR  +  IA G+  +++GTHALFQD + +  L L IVDEQHRFGV QRL L Q 
Sbjct: 358 KLTASKRRDTVASIAAGEVDVVVGTHALFQDDVLFASLGLAIVDEQHRFGVNQRLTLRQK 417

Query: 417 --KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               T PH L+MTATPIPRTL +T+  ++D S I E P GR P+ TV+I   R  +VIER
Sbjct: 418 SIDGTIPHQLVMTATPIPRTLAMTAYAELDYSVIDELPPGRTPVNTVLISQKRRPQVIER 477

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +     E K+ YW+C  +E+ +     +  E    L       +I ++HGR+   +KE+V
Sbjct: 478 ILAACKENKQVYWVCTLVEDSETLAAANAEETAELLKNALKDINIGLVHGRLKAAEKEAV 537

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 538 MKAFKAGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSIASHCV 597

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           +LY   LS  +  RL V++ T DGF IAE+DL  R  GE+LG +Q+G  ++ +A  +   
Sbjct: 598 MLYGDKLSMQAKERLGVMRETNDGFEIAEKDLALRGPGELLGTRQTGEMEYRLADLQRDA 657

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            +L+   +    +    P+  +V     R      +Y +A
Sbjct: 658 GMLDDIHEIGDSLCAHHPE--TVEKILNRWFGARREYMQA 695


>gi|222529215|ref|YP_002573097.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456062|gb|ACM60324.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor bescii DSM
           6725]
          Length = 679

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 239/664 (35%), Positives = 381/664 (57%), Gaps = 17/664 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +N L   +   +GVG+       K+         +  DLL++ P  ++D     KI E+ 
Sbjct: 1   MNVLEKDIRFLKGVGENREKLFKKL------GIKKAEDLLWHIPRKYLDYSRLKKIRELC 54

Query: 66  EERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           +  I +    ++      + +  +  KI + D TG +T ++F +  + +KNV  EG    
Sbjct: 55  DGEIESFVAKVAGKPVEIETRSVKIIKIPVEDSTGVVTTVWFNQ--DYIKNVLKEGEVFC 112

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183
            +GKI++    I + +P +  ++   ++   I  VY+   GLS  + + I+   L ++  
Sbjct: 113 FSGKIERKGFYIEVKNPEFEKYDQHLIHTGRIVPVYNSTEGLSQKVIRNIVNNLLQQVDG 172

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           +L + I   + QK +   I  A   IH P      E     R+RL ++E    Q++LLL+
Sbjct: 173 MLIDIIPPYIRQKYNLSEINFAIKNIHFPENKLSLELA---RKRLVFEEFYLLQLSLLLL 229

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++  +K  GI I       ++  + +PF  T++Q+  + +I QD+    +M R++QGDVG
Sbjct: 230 KENIEKNEGIKIENVQSSLKEFEKLLPFELTEAQKRVLAEIAQDLESTKQMNRLIQGDVG 289

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
            GKT+VAL +  A ++AG Q  +MAP  +LA QHY   KKY  N +  V ++ G+ P+  
Sbjct: 290 CGKTVVALASAYATIKAGYQVALMAPTEVLALQHYNECKKYFDN-KFNVRLLIGSTPKKE 348

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +   L+ + HG   ++IGTHAL QD +++  L L I DEQHRFGV QR++LT+K ++P++
Sbjct: 349 KEIILKELEHGLCKMVIGTHALIQDDVKFKNLGLAITDEQHRFGVIQRVELTKKGSSPNI 408

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL L   GD+DIS I + P GRK I T  +  +    V   +K  L+EG+
Sbjct: 409 LVMTATPIPRTLSLVLYGDLDISIIDQLPPGRKKILTYAVDESFRQRVYNFIKKQLNEGR 468

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           + YWICP IEE +  N +S VE   SL E F    ++A +HG++S  +++ +++ FK+G 
Sbjct: 469 QVYWICPLIEESETLNAKSAVEFAKSLKEGFFKDYNVACLHGKLSVKERDKILNDFKDGH 528

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTV+EVGI+V +A++++IENAE FGLAQLHQLRGRVGRGE  S CIL ++   S
Sbjct: 529 IHILVSTTVVEVGINVPNATVMVIENAERFGLAQLHQLRGRVGRGEYQSYCIL-FNQSDS 587

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + +  R+  +  +++GF IAE DLK R  G++ G KQ G+  F +A       +L+ AR 
Sbjct: 588 EIAKKRMIAITRSQNGFEIAEMDLKLRGPGDLFGTKQHGIMNFKVADIINDMDILKQARI 647

Query: 662 DAKH 665
            A+ 
Sbjct: 648 AAEE 651


>gi|281412262|ref|YP_003346341.1| ATP-dependent DNA helicase RecG [Thermotoga naphthophila RKU-10]
 gi|281373365|gb|ADA66927.1| ATP-dependent DNA helicase RecG [Thermotoga naphthophila RKU-10]
          Length = 763

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 237/663 (35%), Positives = 363/663 (54%), Gaps = 17/663 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG      L K+            DLL + P  + DR    K++++    
Sbjct: 96  LSTDIQYAKGVGPNRKKKLKKL------GIETLRDLLEFFPRDYEDRRKIFKLNDLLPGE 149

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE--GRKITVT 126
            VT  G I    + + Q       +L+DG   + L +F +  E L+    +  G+++ VT
Sbjct: 150 KVTTQGKIVSVETKRFQNMNILTAVLSDGLVHVLLKWFNQ--EYLQTYLKQLTGKEVFVT 207

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VL 185
           G +K           +      +      I  +Y L +G+S    +KI  E +  L   L
Sbjct: 208 GTVKSNAYTGQYEIHNAEVTPKEGEYARRILPIYRLTSGISQKQMRKIFEENIPSLCCSL 267

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E + + +L+K+    + +A+  +H P+     E    ARERLAY+EL   Q+A   +RK
Sbjct: 268 KETLPERILEKRKLLGVKDAYYGMHFPKTFYHLE---KARERLAYEELFVLQLAFQKIRK 324

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + +K  GIP  +EGK+A++ ++++PF  T SQ+ A ++I  DM  +  M R+LQGDVGSG
Sbjct: 325 EREKHGGIPKKIEGKLAEEFIKSLPFKLTNSQKRAHQEIRNDMISEKPMNRLLQGDVGSG 384

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +A+    EAG Q   M P  ILA QHY    +      I V ++ G    + + 
Sbjct: 385 KTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKE 444

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           K    + +GQ  ++IGTHAL Q+ + +  L LVI+DEQHRFGV+QR  L  K      L+
Sbjct: 445 KIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQREALMNKGKMVDTLV 504

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPR++ L   GD+D++ I E P GRK ++T+++P++R++E+ E ++  + +G +A
Sbjct: 505 MSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEIYEFVRQEVMKGGQA 564

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           + + P IEE  + N +S VE +  L +       + ++HGR+S  +K+ VM  F  G   
Sbjct: 565 FIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD 624

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVGIDV  A++++IEN E FGLAQLHQLRGRVGRG + + C L+    + + 
Sbjct: 625 ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVG-DVGEE 683

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL       DGF IAE DLK R  GE  G+KQ G+  F +A       LLE AR+D 
Sbjct: 684 AMERLRFFTLNTDGFKIAEYDLKTRGPGEFFGVKQHGLSGFKVADLYRDLKLLEWAREDV 743

Query: 664 KHI 666
           + I
Sbjct: 744 QEI 746


>gi|312793403|ref|YP_004026326.1| ATP-dependent DNA helicase recg [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180543|gb|ADQ40713.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 679

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 239/664 (35%), Positives = 380/664 (57%), Gaps = 17/664 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +N L   +   +GVG+       K+         +  DLL++ P  ++D     KI E+ 
Sbjct: 1   MNVLEKDIRFLKGVGENREKLFKKL------GIKKAEDLLWHIPRKYLDYSRLKKIRELC 54

Query: 66  EERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           +  I +    ++      + +  +  KI + D TG +T ++F +  + +KNV  EG    
Sbjct: 55  DGEIESFVAKVAGKPVEIETRSVKIIKIPVEDSTGVVTTVWFNQ--DYIKNVLKEGEIFC 112

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183
            +GKI++    I + +P +  ++ Q ++   I  VY+   GLS  + + I+   L ++  
Sbjct: 113 FSGKIERKGFYIEVKNPEFEKYDQQLLHTGRIVPVYNSTEGLSQKVIRNIVNNLLHQVDG 172

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           +L + I   + QK +   I  A   IH P      E     R+RL ++E    Q++LLL+
Sbjct: 173 MLIDIIPPYIRQKYNLRDINFAIKNIHFPENKLSLELA---RKRLVFEEFYLLQLSLLLL 229

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++  +K  GI I       ++  + +PF  T++Q+  + +I QD+    +M R++QGDVG
Sbjct: 230 KENIEKNEGIKIENAQSSLKEFEKLLPFELTEAQKRVLAEIAQDLESTKQMNRLIQGDVG 289

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
            GKT+VAL +  A ++AG Q  +MAP  +LA QHY   KKY  N +  V ++ G+ P+  
Sbjct: 290 CGKTVVALASAYATIKAGYQVALMAPTEVLALQHYNECKKYFGN-KFNVRLLIGSTPKKE 348

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +   L+ + HG   ++IGTHAL QD +++  L L I DEQHRFGV QR++LT+K ++P++
Sbjct: 349 KEIILKELEHGLCKMVIGTHALIQDEVKFKNLGLAITDEQHRFGVIQRVELTKKGSSPNI 408

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL L   GD+DIS I + P GRK I T  +  +    V   +K  L EG+
Sbjct: 409 LVMTATPIPRTLSLVLYGDLDISIIDQLPPGRKKILTYAVDESFRQRVYNFIKKQLDEGR 468

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           + YWICP IEE +  N +S VE   SL E F    ++  +HG++S  +++ +++ FK+G 
Sbjct: 469 QVYWICPLIEESETLNAKSAVEFAKSLKEGFFKDYNVGCLHGKLSAKERDKILNDFKDGH 528

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTV+EVGI+V +A++++IENAE FGLAQLHQLRGRVGRGE  S CIL ++   S
Sbjct: 529 IHILVSTTVVEVGINVPNATVMVIENAERFGLAQLHQLRGRVGRGEHQSYCIL-FNQSDS 587

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + +  R+  +  +++GF IAE DLK R  G++ G KQ G+  F +A       +L+ AR 
Sbjct: 588 EIAKKRMIAITRSQNGFEIAEMDLKLRGPGDLFGTKQHGIMNFKVADIINDMDILKQARI 647

Query: 662 DAKH 665
            A+ 
Sbjct: 648 AAEE 651


>gi|325696972|gb|EGD38859.1| DNA helicase RecG [Streptococcus sanguinis SK160]
          Length = 671

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 239/688 (34%), Positives = 386/688 (56%), Gaps = 27/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D      + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL------GLETLQDLLLYFPFRYEDF-KSKNVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    +    +D     ++ VY L  G+S     K+I  A  +    +L 
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQANLVKLIKTAFDQGLDLLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S  EA   +H P+   D+     A  R+ ++EL   Q+ L +++++
Sbjct: 169 ENLPQSLLERYQLVSRVEAVRAMHFPKDLADY---KQALRRVKFEELFYFQMQLQVLKRE 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVGSG
Sbjct: 226 TKAVSNGLKIDWQSDAVAEKKKSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A RR
Sbjct: 286 KTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I  G+  +I+GTHAL Q+ + Y+ L LVI+DEQHRFGV+QR  L +K   P VL+
Sbjct: 344 ETLAAIEKGRVDMIVGTHALIQEGVHYHALGLVIIDEQHRFGVEQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ LK  L +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGAQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G   
Sbjct: 464 YFISPLIEESEALDLKNAIALEEELTAYFGHQAQVALLHGKMKSEEKEAIMQDFKEGRTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK  
Sbjct: 583 GKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVT 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYN 691
             I T DP+  +     + I L+L + +
Sbjct: 643 SQI-TADPNWRTDPNWHL-IALHLDKRD 668


>gi|152978695|ref|YP_001344324.1| ATP-dependent DNA helicase RecG [Actinobacillus succinogenes 130Z]
 gi|150840418|gb|ABR74389.1| ATP-dependent DNA helicase RecG [Actinobacillus succinogenes 130Z]
          Length = 693

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 254/677 (37%), Positives = 380/677 (56%), Gaps = 24/677 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+T  GVG   +  LS+I            DLLF+ P  + DR +   I++I  ++  T
Sbjct: 10  PLTTLSGVGTAIAAKLSRI------GINNLQDLLFHLPIRYEDRTHITPIADIRPDQYAT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I Q    Q  +R    + L+DG+ +I L FF     M +N F  G ++   G+IK+
Sbjct: 64  IEG-IVQTCDVQFGRRPILTVSLSDGSSKIMLRFFNFNAGM-RNSFQIGARVKAFGEIKR 121

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
            +    + HP Y  I  N        +  +Y+   GL     +K+  +AL+ L    L E
Sbjct: 122 GRFMAEIHHPEYQIIRDNQPIQLEETLTPIYAATEGLKQASLRKLTEQALALLNKVQLTE 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
            +         F S+ +A + +H P      E       PA+ RL ++ELLA  +A+  +
Sbjct: 182 ILPDAF-NPYPF-SLKDALHFLHRPPPDVSLEMLEKGQHPAQVRLIFEELLAHNLAMQKV 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   ++   +P+  +  + Q+ L  +PF PT +Q     DI +D++Q   M+R++QGDVG
Sbjct: 240 RVGTQQHYAVPLVHQTDLKQRFLAQLPFRPTNAQLRVTADIERDLAQSYPMMRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A  A ++ G Q  +MAP  ILA+QH E  +++ +   I V  + G +    
Sbjct: 300 SGKTLVAALAAIAVIDNGKQVALMAPTEILAEQHAENFRRWLEPFNIRVGWLAGKVKGKA 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R+  L  I  G+  +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K      
Sbjct: 360 RQAVLTEIQRGEVQMVVGTHALFQEEVKFADLALVIIDEQHRFGVHQRLMLREKGENSGI 419

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++ R+    
Sbjct: 420 YPHQLIMTATPIPRTLAMTVYADLDTSVIDELPPGRTPITTVVVSEERRAEIVARVHNAC 479

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSF 537
            +E ++AYW+C  IEE +    ++       L +      I ++HGRM   +K+ +M  F
Sbjct: 480 TNEKRQAYWVCTLIEESEVLEAQAAEATAEDLQKALPHLRIGLVHGRMKPAEKQEIMARF 539

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y 
Sbjct: 540 KAAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYK 599

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPL K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +F +A       ++ 
Sbjct: 600 PPLGKISQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAEFKVANLMRDRRMIP 659

Query: 658 IARKDAKHILTQDPDLT 674
             +  AK ++ + PD+ 
Sbjct: 660 TVQHYAKQLIVKHPDIA 676


>gi|193215249|ref|YP_001996448.1| ATP-dependent DNA helicase RecG [Chloroherpeton thalassium ATCC
           35110]
 gi|193088726|gb|ACF14001.1| ATP-dependent DNA helicase RecG [Chloroherpeton thalassium ATCC
           35110]
          Length = 711

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 242/719 (33%), Positives = 376/719 (52%), Gaps = 37/719 (5%)

Query: 7   NPLF-APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           N  F A L+  +GVG K +    K      A    + DLL Y P  ++DR     I  +S
Sbjct: 5   NEFFRAELTYLKGVGPKRAAAFEK------AGIKNYEDLLNYFPRRYLDRTQIKSIGALS 58

Query: 66  EERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           E    T+ G + Q        K + +   L D TG I L++F +    L  +  EG  + 
Sbjct: 59  EGETATLVGEVRQIRFDGANWKTKRFIASLYDKTGRIDLVWF-QGANYLSKMLREGDALA 117

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNS-------------QDVNFPLIEAVYSLPT-----GL 166
           V GKI        ++HP +   N              +  N   I  +YSLP      GL
Sbjct: 118 VHGKIGFFNGTPQLMHPDFDKLNGAERSDDDDLKNDFELFNTGKIVPLYSLPEALKRGGL 177

Query: 167 SVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225
           +  + ++I+   L + L  + E +   + +      +A A+  IH P   +  E      
Sbjct: 178 NSRIMRRIVRNLLDKSLGHIEENLPASICENYRLMPLAMAYEQIHFPASPELLEQAKF-- 235

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGI-PINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
            R+ + EL   Q    + +   +  +        G+   K+ +NIPF  T +Q+  I++I
Sbjct: 236 -RMKWTELFYMQTLFAVRKCDVETSVSAEKFETVGEFTNKLFKNIPFEMTGAQKEVIREI 294

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
            +D+   ++M R++QGDVGSGKTLVA+ AM  A++ G Q   MAP  ILA QH+  +KK+
Sbjct: 295 RRDLKSGSQMNRLVQGDVGSGKTLVAIFAMMIALDNGAQCAFMAPTEILATQHFLTLKKF 354

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
            +   + + ++ G   +A R + L  I  G+  I +GTHAL +  + +  L L ++DEQH
Sbjct: 355 LEPLGVKIALLVGKQRKALRTEILAGIESGETQITVGTHALIEGKVVFENLGLAVIDEQH 414

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           RFGV QR  L  KA  PH+LLMTATPIPRTL +T  GD+D+S I E P  RKPI T +  
Sbjct: 415 RFGVMQRKALQDKAVNPHILLMTATPIPRTLTMTLFGDLDVSIINEMPKNRKPIVTKLRH 474

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIH 522
            + ++EV E +K  + +G++AY + P +EE ++ +  +  E    L +       + +IH
Sbjct: 475 ESEVEEVYEFIKSEIRKGRQAYIVYPLVEESEKMDLAAATEAHEELKDTVFDMCRVGLIH 534

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G++   +KE  M++F+NG  ++L+ TTVIEVG+DV +A++++I++AE FGLAQLHQLRGR
Sbjct: 535 GQLFPYEKEDEMEAFRNGKSRILVGTTVIEVGVDVPNATVMVIQHAERFGLAQLHQLRGR 594

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRGE  S C L+Y   L+ ++  RLS ++ + DGF ++E D + R  G ILG +QSG+ 
Sbjct: 595 VGRGEAQSYCFLVYS-KLTPDAKERLSAMEESTDGFRLSEIDARLRGAGNILGTEQSGII 653

Query: 643 -KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
               +A       +L  AR+ A  ++  D  L     +  R   YL  Y++ ++    G
Sbjct: 654 SDLKVANLNEDSHILASAREAAFTLVRDDKQLRKPENKPARDY-YLKHYHDRYKLADVG 711


>gi|153871444|ref|ZP_02000613.1| ATP-dependent DNA helicase RecG [Beggiatoa sp. PS]
 gi|152072089|gb|EDN69386.1| ATP-dependent DNA helicase RecG [Beggiatoa sp. PS]
          Length = 687

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 253/680 (37%), Positives = 391/680 (57%), Gaps = 24/680 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            P++T  GV +  +  L+++            D+LF+ P  + +R     + ++     V
Sbjct: 3   TPINTLHGVNEPIAEQLARL------GIQTTQDMLFHLPLRYENRTQIKPLIDLEIGESV 56

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G I Q +  +  KRR +  +L+DGTG I L FF+      +     G ++   G+I+
Sbjct: 57  LVEGTI-QTAEVKFGKRRSFICMLSDGTGTIMLRFFHFYPSQ-REKLKPGVRLRCFGEIR 114

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           +    + +VHP     +S + + PL+E     +Y   + L+  LF  +I +   +   + 
Sbjct: 115 QGYQCLELVHPQVECIDSAN-SAPLLEEHLTPIYPSNSHLNQALFYSLIDQIFEQHEPI- 172

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLL 242
           ++I + + +  +   + EA  I+H P          E   PA+ RL ++ELLA  ++L +
Sbjct: 173 DYIPELIRKPFNLLPLGEALQILHRPPPDISLQALQEGQHPAQRRLVFEELLAFHLSLYM 232

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           ++ Q        ++ EG++  K+L  +PF  TK+Q+    +I  D+   + M R+LQGDV
Sbjct: 233 LKAQAHSRKAPSLDNEGELIPKLLAQLPFQLTKAQQQVHAEIATDLHATHPMQRLLQGDV 292

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA +    A+E+G Q  +MAP  +L++QH +   ++ +  +I +  +TG++ + 
Sbjct: 293 GSGKTIVAALCALQAIESGYQVAVMAPTELLSEQHKQTFSQWLEPLEIELTWLTGSLTKK 352

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419
            R +ALE+IA GQA ++IGTHALFQ  +++  L LVIVDEQHRFGV QRL L  K T   
Sbjct: 353 KREQALEKIASGQAALVIGTHALFQKEVEFANLGLVIVDEQHRFGVHQRLALRNKGTQSG 412

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TVIIP  R DE+IER+  V
Sbjct: 413 LYPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVIIPNTRRDEIIERINHV 472

Query: 479 L-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
              E ++AYW+C  IEE +   F++  E    L +   +  I ++HGR+   +KE VM+ 
Sbjct: 473 CQHEDRQAYWVCTLIEESEVMQFQAAEETVEQLQKALPALQIGLVHGRIKPKEKEEVMEK 532

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK     LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 533 FKQRQLHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVQSYCVLLY 592

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLS+ + +RL+ +++  DGFLIA+ DL+ R  G++LG +Q G+    IA  +  + LL
Sbjct: 593 QQPLSEIAKSRLATIRDHHDGFLIAQRDLEIRGPGDVLGTRQKGVLNLRIADLQRDEDLL 652

Query: 657 EIARKDAKHILTQDPDLTSV 676
               +  K +L + P+    
Sbjct: 653 PEVVEAGKILLEKFPEHCQP 672


>gi|126664109|ref|ZP_01735102.1| ATP-dependent DNA helicase [Flavobacteria bacterium BAL38]
 gi|126623823|gb|EAZ94518.1| ATP-dependent DNA helicase [Flavobacteria bacterium BAL38]
          Length = 706

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 244/696 (35%), Positives = 375/696 (53%), Gaps = 28/696 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           LN L  P+   +GVG +    L K +        ++ DLL   P+ +IDR    KI+E+ 
Sbjct: 3   LNLLETPIEYLKGVGPQRGDLLRKEL-----GIHKYADLLNLFPNRYIDRTRYYKINELQ 57

Query: 66  E-ERIVTITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                V I G I    +  Q + R        D TG++ L++F +  + ++         
Sbjct: 58  NSNSEVQIVGKIINIKTVEQGKGRSRLVATFIDDTGQMELVWF-QGQKWIRESIKINVPY 116

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPT-----GLSVDLFKKIIVE 177
            + GK+ +      M HP          +    ++ VY         G+S  +  K++ +
Sbjct: 117 VIFGKVTQFGATYNMAHPEMELLEEHKTSLRSAMQPVYPSTEKLANKGISNKVINKMMQQ 176

Query: 178 ALSRLPVL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
                 VL  E +   LL +        A   IH P+     +  + A+ RL ++EL   
Sbjct: 177 LFVETQVLFSENLPNYLLDELKLIPKNAALFNIHFPKSQ---DLLAKAQFRLKFEELFFI 233

Query: 237 QIALLLMRKQFKKEIG-IPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRM 294
           Q+ L+      K +I  +P    G+      + ++PF  T +Q+  +K+I  D+    +M
Sbjct: 234 QLQLITKNLIRKHKIKGMPFEKVGENFNNFYKNHLPFDLTNAQKRVLKEIRNDLGSNAQM 293

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQI 350
            R+LQGDVGSGKT+VAL+ M  A + G Q+ +MAP  ILA QH+    E +   T    I
Sbjct: 294 NRLLQGDVGSGKTIVALMCMLLAKDNGFQSCLMAPTEILANQHFNGLSELLNPETSGLNI 353

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            ++I+TG+   A R+   E + +G   IIIGTHAL +D +Q+  L L I+DEQHRFGV+Q
Sbjct: 354 SIKILTGSTKTAERKIIHEALENGTLDIIIGTHALLEDKVQFQNLGLAIIDEQHRFGVEQ 413

Query: 411 RLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           R KL  KA+  PHVL+MTATPIPRTL ++  GD+DIS I E P GRKPI+TV    +   
Sbjct: 414 RSKLWGKASIPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPIQTVHRYDSNRL 473

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMS 526
           +V + LK  +++G++ Y + P I+E ++ +++ +++ + S+   F     SI+I++G+M 
Sbjct: 474 KVWKFLKDEIAKGRQVYIVYPLIQESEKMDYKDLMDGYESISRDFPLPQYSISIVYGKMK 533

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DK+  M  F  G   +++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG
Sbjct: 534 PADKDEEMRRFSEGKTNIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRG 593

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            E S CIL+    LS +S  R+  +  T DGF I+E DLK R  G+I+G +QSG+    I
Sbjct: 594 AEQSYCILMTSHKLSNDSKIRMETMVRTNDGFEISEVDLKLRGPGDIMGKQQSGVLNLQI 653

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           A       +L++AR  A  +L +D  +       +R
Sbjct: 654 ADLVKDKDILQLARHHAIKLLKEDAPMEKPEHAKLR 689


>gi|255319827|ref|ZP_05361032.1| ATP-dependent DNA helicase RecG [Acinetobacter radioresistens SK82]
 gi|262380359|ref|ZP_06073513.1| ATP-dependent DNA helicase RecG [Acinetobacter radioresistens
           SH164]
 gi|255303146|gb|EET82358.1| ATP-dependent DNA helicase RecG [Acinetobacter radioresistens SK82]
 gi|262297805|gb|EEY85720.1| ATP-dependent DNA helicase RecG [Acinetobacter radioresistens
           SH164]
          Length = 681

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 262/669 (39%), Positives = 391/669 (58%), Gaps = 21/669 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +   +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R   +
Sbjct: 4   VHQLQGVGTASAALLEKL------NIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLL 57

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +S    F   KR+   +LL D  G++TL  FY   + L +    G ++ V G+++  
Sbjct: 58  EGTVSSI-DFPPGKRKSMAVLLEDDFGKVTLR-FYHIYKALTDKMRSGNRLRVFGEVRVG 115

Query: 133 KNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIE 190
              + + HP     ++Q       + A+Y    GL+    ++ + +AL +    LPE + 
Sbjct: 116 ARGLELYHPEIQQISAQTALPKTRLTAIYPSTEGLTQAKLREYVRQALEQHSENLPELLP 175

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQ 246
           +      +     EA   IH P    + +     + PA++RL ++EL+A QI+LL  R  
Sbjct: 176 EKFTNGYAL---KEALEYIHEPPIDANMQQLMQGSHPAQQRLIFEELVAHQISLLTRRAY 232

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            ++           +A+K+L N+PF+ T +Q    K+I+ D+ Q   MLR++QGDVG+GK
Sbjct: 233 IREIEAPAFEPSTILAKKLLANLPFNMTGAQRRVSKEIMIDLKQHQPMLRLVQGDVGAGK 292

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVA +A   A+EAG Q  +MAP  ILA+QHY   K++ +   I V  ++G      R +
Sbjct: 293 TLVAAVAACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLGIQVAWLSGKQKGKARTQ 352

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHV 423
           A   I  G A +++GTHALFQ+++++ +L LVI+DEQHRFGV QRL L  K      PH 
Sbjct: 353 AEAIIRGGLAQLVVGTHALFQENVEFARLGLVIIDEQHRFGVDQRLALRNKGAEQMTPHQ 412

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     EGK
Sbjct: 413 LVMTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVLQRIATNCQEGK 472

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           +AYW+C  +E+ +  + ++    +  + E F S +I ++HG+M   +K+SVM  FKN   
Sbjct: 473 QAYWVCTLVEQSETLDAQAAEATYAEIKERFPSLNIGLVHGKMKADEKQSVMQKFKNNEL 532

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG + S C LLY  PLS+
Sbjct: 533 QLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCALLYKTPLSQ 592

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A   
Sbjct: 593 NGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVAKLERDDHLLTEAHYV 652

Query: 663 AKHILTQDP 671
           A+ +L   P
Sbjct: 653 AEQVLKDYP 661


>gi|312622538|ref|YP_004024151.1| ATP-dependent DNA helicase recg [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203005|gb|ADQ46332.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 679

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 239/664 (35%), Positives = 379/664 (57%), Gaps = 17/664 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +N L   +   +GVG+       K+         +  DLL++ P  ++D     KI E+ 
Sbjct: 1   MNVLEKDIRFLKGVGENREKLFKKL------GIKKAEDLLWHIPRKYLDYSRLKKIRELC 54

Query: 66  EERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           +  I +    ++      + +  +  KI + D TG +T ++F +  + +KNV  EG    
Sbjct: 55  DGEIESFVAKVAGKPLEIETRSVKIIKIPVEDSTGVVTTVWFNQ--DYIKNVLKEGEVFC 112

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183
            +GKI++    I + +P +  ++   ++   I  VY+   GLS  + + I+   L ++  
Sbjct: 113 FSGKIERKGFYIEVKNPEFEKYDQHLIHTGRIVPVYNSTEGLSQKVIRNIVNNLLQQVDG 172

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           +L + I   + QK +   I  A   IH P      E     R+RL ++E    Q++LLL+
Sbjct: 173 MLIDIIPPYIRQKYNLSEINFAIKNIHFPENKLSLELA---RKRLVFEEFYLLQLSLLLL 229

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++  +K  GI I       ++  + +PF  T +Q+  + +I QD+    +M R++QGDVG
Sbjct: 230 KENIEKNEGIKIENVQSSLKEFEKLLPFELTDAQKRVLAEIAQDLESTKQMNRLIQGDVG 289

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
            GKT+VAL +  A ++AG Q  +MAP  +LA QHY   KKY  N +  V ++ G+ P+  
Sbjct: 290 CGKTVVALASAYATIKAGYQVALMAPTEVLALQHYNECKKYFDN-KFNVRLLIGSTPKKE 348

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +   L+ + HG   ++IGTHAL QD +++  L L I DEQHRFGV QR++LT+K ++P++
Sbjct: 349 KEIILKELEHGLCKMVIGTHALIQDDVKFKNLGLAITDEQHRFGVIQRVELTKKGSSPNI 408

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL L   GD+DIS I + P GRK I T  +  +    V   +K  L EG+
Sbjct: 409 LVMTATPIPRTLSLVLHGDLDISIIDQLPPGRKKILTYAVDESFRQRVYNFIKKQLDEGR 468

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           + YWICP IEE +  N +S VE   SL E F    ++A +HG++S  +++ +++ FK+G 
Sbjct: 469 QVYWICPLIEESETLNAKSAVEFAKSLKEGFFKDYNVACLHGKLSAKERDKILNDFKDGH 528

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTV+EVGI+V +A++++IENAE FGLAQLHQLRGRVGRGE  S CIL ++   S
Sbjct: 529 IHILVSTTVVEVGINVPNATVMVIENAERFGLAQLHQLRGRVGRGEYQSYCIL-FNQSDS 587

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + +  R+  +  +++GF IAE DLK R  G++ G KQ G+  F +A       +L+ AR 
Sbjct: 588 EIAKKRMIAITRSQNGFEIAEMDLKLRGPGDLFGTKQHGIMNFKVADIINDMDILKQARI 647

Query: 662 DAKH 665
            A+ 
Sbjct: 648 AAEE 651


>gi|327461775|gb|EGF08106.1| DNA helicase RecG [Streptococcus sanguinis SK1]
          Length = 671

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 241/688 (35%), Positives = 388/688 (56%), Gaps = 27/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D      + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFTKL------GLETLQDLLLYFPFRYEDF-KSKNVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    +    +D     ++ VY L  G+S     K+I  A  +    +L 
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQANLVKLIKTAFDQGLDLLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S  EA   +H P+   D+     A  R+ ++EL   Q+ L +++++
Sbjct: 169 ENLPQSLLERYQLVSRVEAVRAMHFPKDLADY---KQALRRVKFEELFYFQMQLQVLKRE 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVGSG
Sbjct: 226 TKAVSNGLKIDWQLDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A RR
Sbjct: 286 KTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I +GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P VL+
Sbjct: 344 ETLAAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   ++  V++ LK  L +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLGVVLDWLKKELHKGAQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G   
Sbjct: 464 YFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGRTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYN 691
             I T DP+  +     + I L+L + +
Sbjct: 643 SQI-TADPNWRTDPSWHL-IALHLDKRD 668


>gi|251793133|ref|YP_003007861.1| ATP-dependent DNA helicase RecG [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534528|gb|ACS97774.1| ATP-dependent DNA helicase RecG [Aggregatibacter aphrophilus
           NJ8700]
          Length = 693

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 255/686 (37%), Positives = 379/686 (55%), Gaps = 26/686 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL+   GVG   +  L K+            DLLF+ P  + DR     
Sbjct: 1   MHAQLLDAI--PLTAISGVGAAIAEKLGKL------GILNLQDLLFHLPLRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I ++  E+  TI G + Q +  Q  +R      L+DG+ ++ L FF     M KN    G
Sbjct: 53  IIDLRPEQYATIEG-VVQSTEVQFGRRPMLMTYLSDGSAKLALRFFNFNAGM-KNSLQLG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++++ +    M HP Y  I  N   V    +  +Y    GL     +K+I +A
Sbjct: 111 ARVKAFGEVRRGRFMAEMHHPEYQIIHDNKPLVLSETLTPIYPTTEGLKQTSLRKLIAQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDE 232
           L  L    L E    +         +  A   +HNP      E       PA++RL ++E
Sbjct: 171 LQVLEKTPLAELWPVEFNPHPF--DLKSAIQFLHNPPPDVSLETLEEGKHPAQQRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++    P+  +  + Q+ L  +PF+PT +Q    ++I +D+ Q  
Sbjct: 229 LLAYNLAMQKVRLGIQENFAEPLRAQSDLKQRFLAQLPFTPTHAQLRVTQEIEEDLQQNY 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q V+MAP  ILA+QH    +++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALTAIDNGKQVVLMAPTEILAEQHATNFRRWFEPLGIDV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R   LERI +G+  +++GTHALFQD ++++ L LVIVDEQHRFGV QRL
Sbjct: 349 GWLAGKVKGKQRTVELERIKNGRVQMVVGTHALFQDEVKFHNLSLVIVDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T   D+D S I E P GR PI T+ I  +R 
Sbjct: 409 MLREKGNQAGVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTIAISEDRR 468

Query: 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMS 526
             +IER+    + E ++AYW+C  I+E +    ++       L +      I ++HGRM 
Sbjct: 469 ANIIERVNRACTEEKRQAYWVCTLIDESEVLEAQAAEAVAEDLRKILPHLRIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ +M  FK+    LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG
Sbjct: 529 PAEKQEIMQEFKDANLDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+Y PPL K S  RL V+++T+DGF+I+E+DL+ R  GE+LG KQ+G+ +F +
Sbjct: 589 TTASFCVLMYKPPLGKISQKRLQVMRDTQDGFVISEKDLEIRGPGEVLGTKQTGITEFKV 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
           A       +L   +  AK ++ + P 
Sbjct: 649 ANLMRDRKMLPTVQFYAKQLVQKYPQ 674


>gi|50086230|ref|YP_047740.1| ATP-dependent DNA helicase RecG [Acinetobacter sp. ADP1]
 gi|49532206|emb|CAG69918.1| ATP-dependent DNA helicase [Acinetobacter sp. ADP1]
          Length = 686

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 261/670 (38%), Positives = 385/670 (57%), Gaps = 21/670 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             +   +GVG   +  L K+      N     DLLF+ P  + DR     ++++   R  
Sbjct: 7   TSVHHLQGVGTAAASLLEKL------NIFTTDDLLFHLPRDYEDRSTVIAMNQLMVGRSY 60

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G I     F   KR+    LL D  G++TL  FY   + L +    G+++ V G+++
Sbjct: 61  LLEGEIKSL-DFPAGKRKSVAALLQDDCGKVTLR-FYHIYKGLTDKLKSGQRLRVFGEVR 118

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
                + M HP   + H+   +    + A+Y    GL+    ++ I +AL +    LPE 
Sbjct: 119 VGARGLEMYHPEIQVIHDYTPLPKTQLTAIYPSTEGLTQPKLREYIKQALKQYSDNLPEL 178

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMR 244
           + K            EA + IH P    + +     + PA++RL ++EL+A QI+LL  R
Sbjct: 179 LPKQFTNGYVL---KEALHYIHEPPLNANMQQLALGSHPAQQRLIFEELVAHQISLLTRR 235

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              ++           +A+ +L  +PF  T +Q+   K+I  D+ Q   MLR++QGDVG+
Sbjct: 236 AYIRQIASPKFEPSQTLAKALLAQLPFQMTSAQKRVSKEIAHDLHQSQPMLRLVQGDVGA 295

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA IA   A+EAG Q  +MAP  ILA+QHY   K++ +   I V  ++G      R
Sbjct: 296 GKTLVAAIAACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLSIQVGWLSGKQKGKAR 355

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ---KATAP 421
            +A E I  GQ  +++GTHALFQD++++ KL LVI+DEQHRFGV QRL L         P
Sbjct: 356 TQAEELIRTGQVQLVMGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGVDHFTP 415

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EVI R+     E
Sbjct: 416 HQLVMTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVINRIASNCLE 475

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           GK+AYW+C  +E+ +  + ++    +  +   F    + ++HG+M   +K++VM +FK+ 
Sbjct: 476 GKQAYWVCTLVEQSETLDAQAAEATYQEIRSRFPELKVGLVHGKMKAEEKQNVMQAFKDN 535

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG + S C+LLY  PL
Sbjct: 536 QLQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKHPL 595

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A 
Sbjct: 596 SQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMNFRVAKLERDDHLLVQAH 655

Query: 661 KDAKHILTQD 670
             A+ +L   
Sbjct: 656 YVAEQVLKDH 665


>gi|327489060|gb|EGF20855.1| DNA helicase RecG [Streptococcus sanguinis SK1058]
          Length = 671

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 238/688 (34%), Positives = 385/688 (55%), Gaps = 27/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D      + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL------GLETLQDLLLYFPFRYEDF-KSKNVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    +    +D     ++ VY L   +S     K+I  A  +    +L 
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQRISQASLVKLIKTAFDQGLDLLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S  EA   +H P+   D+     A  R+ ++EL   Q+ L +++++
Sbjct: 169 ENLPQPLLERYQLVSRVEAVRAMHFPKDLADY---KQALRRVKFEELFYFQMQLQVLKRE 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + I+ +        +++PF  T +QE ++ +ILQD+     M R+LQGDVGSG
Sbjct: 226 TKAVSNGLKIDWQSDAVAVKKKSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A RR
Sbjct: 286 KTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I  GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P VL+
Sbjct: 344 ETLAAIEKGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKP+ T  +   +++ V++ LK  L +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPVITRWVKHEQLEVVLDWLKKELHKGAQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G   
Sbjct: 464 YFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGRTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYN 691
             I T DP+  +     + I L+L + +
Sbjct: 643 SQI-TADPNWRTDPSWHL-IALHLDKRD 668


>gi|319789141|ref|YP_004150774.1| ATP-dependent DNA helicase RecG [Thermovibrio ammonificans HB-1]
 gi|317113643|gb|ADU96133.1| ATP-dependent DNA helicase RecG [Thermovibrio ammonificans HB-1]
          Length = 817

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 244/707 (34%), Positives = 405/707 (57%), Gaps = 21/707 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +   F P+   +G+  K    L K+           ID ++Y P  + DR    K++++ 
Sbjct: 120 IEAFFQPVEKIKGITAKRVNRLKKL------GIESVIDAIYYLPFRYEDRTTVTKMAQLK 173

Query: 66  EERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLF-----FYRKTEMLKNVFFE 119
            +R   + G ++  S  + +  +   K+ L D TG ++L+F     F     + +     
Sbjct: 174 PDREQLVKGKVTAISQIKTKNGKELLKVTLYDKTGAVSLIFLNKKVFGYYKLLFEKAKKL 233

Query: 120 GRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           G+++   GK+K+  +   + HP   +    +      I  +Y    GL     ++ I   
Sbjct: 234 GKEVLAYGKVKRSTSGFTIYHPEVEVLEPGRLEKLGRILPIYHCAEGLKQTTVRRDIHFV 293

Query: 179 LSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE---WTSPARERLAYDELL 234
           + + LP +PE++ + + +++     AEAF  +H P   K  E   + SP + R+ +DEL 
Sbjct: 294 VEKVLPFMPEYLPEKIRKRQKLLEAAEAFWRVHFPSDEKPEELQTFRSPPQRRVIFDELF 353

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
             Q+AL L R++ K+E GI   V  ++ ++  + +PF  T +QE  +K+I++DM +   M
Sbjct: 354 LFQLALALHRQKVKRERGIAFPVTEELIEEFKKALPFKLTGAQERVLKEIVEDMKKPEPM 413

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++QGDVGSGKT+VA  A   A ++G Q  +MAP  ILA QHY+  K++ +   I V +
Sbjct: 414 NRLVQGDVGSGKTVVAAAAAFFAAKSGYQTAVMAPTEILANQHYKKFKEFLKPYGITVGL 473

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+M +  +      I  G   +++GTHAL Q+ +++  L LV++DEQHRFGV+QR++L
Sbjct: 474 LTGSMTKREKETVYRAIKEGVIKVVVGTHALIQEGVEFKNLGLVVIDEQHRFGVKQRVEL 533

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +K   P VL+MTATPIPRTL +T+ GD+D+S I E PAGRKP+KT I+  + + ++++R
Sbjct: 534 KKKGKMPDVLVMTATPIPRTLAMTAYGDLDVSVIDELPAGRKPVKTEILFSDELPKLVKR 593

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESV 533
           LK  L +G +AY + P +EE ++   ++  E  +   E      + ++HG+M   +K+ V
Sbjct: 594 LKEELQKGNRAYIVYPLVEESEKLELKAATEMHHFWSEKLKPYRVGLLHGKMKQEEKDKV 653

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M++FK G  ++L++TTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG+  S C 
Sbjct: 654 MEAFKRGEFQVLVSTTVIEVGVDVPEATVMVIEHAERFGLAQLHQLRGRVGRGDRQSYCY 713

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+    + + +  RL VL++T DGF IAE DL  R  GEI G +QSG+  F +A      
Sbjct: 714 LVTSREVGEEAIKRLKVLESTNDGFKIAEADLAFRGPGEIFGTRQSGLGDFKVADLRRDY 773

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            +L+ AR++A  ++ ++P+L  +        L  +++ E F  +  G
Sbjct: 774 DILKEARREAMELIKENPELNGLEELK---KLMKFRFGEKFDLVEVG 817


>gi|329889843|ref|ZP_08268186.1| DEAD/DEAH box helicase family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328845144|gb|EGF94708.1| DEAD/DEAH box helicase family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 696

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 278/698 (39%), Positives = 410/698 (58%), Gaps = 16/698 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFA +ST +GVG + +  + K+            D+LF  PS  I R     
Sbjct: 1   MRPEILFPLFADVSTLKGVGPRSAPLVQKVAG------PLVRDVLFLSPSGVIQRRRTTA 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           + E  +  I      I +      +   P K+   D TG I L++F      ++++   G
Sbjct: 55  M-EAVDGEIGVFEVTIDRLIP-PHKHGAPIKVRAIDDTGFIHLIWFAGSPRHIESLAPRG 112

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            +  VTGK+++  + + + HP YI    +    PL E VY    GL+    +K+   AL+
Sbjct: 113 ARRLVTGKVERFNSEVQIAHPDYIMPVEKADEIPLSEPVYPATQGLTSRQIRKLAQGALA 172

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
             P LPEW E + L  + +     A   +H P    D    +P R+RLAYDEL A Q+AL
Sbjct: 173 LAPELPEWQELNWLAARRWVGWRAALEALHAPTNEADLTPDTPVRQRLAYDELFAHQLAL 232

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
              R+  +      I   G+ + ++   +PF+ T++QE A+ +I  D+S   +M R+LQG
Sbjct: 233 ARRRRARQITPAARIAP-GEASARLPAALPFALTRAQEQAVAEIRADLSSGEQMGRLLQG 291

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT VA +A+A A   G QA +MAP  ILA+QHY+ +        +   ++TG   
Sbjct: 292 DVGSGKTAVAALALADAASNGFQAALMAPTEILARQHYDKLSPLLNQAGVRSLLLTGRDT 351

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            A RR  L  +A G+A + IGTHALFQD++Q+++L L ++DEQHRFGV++R +L  K   
Sbjct: 352 PAERRGKLAALASGEAQVAIGTHALFQDAVQFHRLALAVIDEQHRFGVRERQRLQAKGDP 411

Query: 421 P----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                H+L M+ATPIPRTL LT  G++++S++ EKP GR P+ T ++P+ RI EV +RLK
Sbjct: 412 ALGGVHLLTMSATPIPRTLELTQYGELEVSRLMEKPPGRTPVTTAVLPLARIGEVAKRLK 471

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             +  G +AYWICP + E +  +  +  +R   L ++  + + + HG+M   ++E+VM  
Sbjct: 472 AAVQAGAQAYWICPLVAESEAIDLAAAEDRAEDLRKYLGTEVGLAHGQMPGAEREAVMAE 531

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G   +L+ATTV+EVG+DV +ASI++IE+A+ FGLAQLHQLRGRVGRG + S+CILLY
Sbjct: 532 FADGRLPVLVATTVVEVGVDVPNASIMVIEHADRFGLAQLHQLRGRVGRGAKASACILLY 591

Query: 597 ---HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
                 L + +  RL  L+ TEDGF+IAEED + R  G+ LG+KQSG P +  A P  H 
Sbjct: 592 GGEDGALGETAKERLETLRRTEDGFVIAEEDFRLRGGGDPLGLKQSGFPAYRFADPIRHR 651

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           SLL  A  DA+ +L +DP+LTS RGQ++R+L  L+ + 
Sbjct: 652 SLLLAAADDARLLLGRDPNLTSERGQAVRLLEALFDWK 689


>gi|157150698|ref|YP_001449735.1| ATP-dependent DNA helicase RecG [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075492|gb|ABV10175.1| ATP-dependent DNA helicase RecG [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 671

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 245/693 (35%), Positives = 392/693 (56%), Gaps = 37/693 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PLS   GVG K +   +K+            DLL Y P  + D     ++ ++ +  
Sbjct: 3   LHQPLSVLPGVGPKSAEKFAKL------GIETLQDLLLYFPFRYEDF-QSKQVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              I+G ++  ++ Q    +  ++  +   GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVISGIVATPANVQYYGFKRNRLRFSIKQGEVILAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             K K  +  +    +    +D     ++ VY +  G+S     K+I  A  + L +L  
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRVAQGISQISLIKLIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S AEA   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQVLLERYHLLSRAEAVRAMHFP---KDLAEYKQALRRVKFEELFYFQMQLQVLKME 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + ++ + +  Q+    +PF  T +QE A+ +IL D+     M R+LQGDVGSG
Sbjct: 226 TKDVSNGLVLDWQEEQLQEKKSQLPFPLTGAQERALAEILSDLKSPAHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH+E + +      + + ++TG+M  A R+
Sbjct: 286 KTVVAGLAMYAVYTAGYQSALMVPTEILAEQHFESLSQLF--PDLKLALLTGSMKTAERK 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I  GQ  ++IGTHAL QD +QY++L LVIVDEQHRFGV QR  L +K   P VL+
Sbjct: 344 ETLLAIELGQVDMVIGTHALIQDGVQYHRLGLVIVDEQHRFGVAQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ +K  L +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWIKKELVKGAQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ ++    L  +F   + ++++HG+M   +KE++M +FKN    
Sbjct: 464 YFISPLIEESEALDLKNAIDLEEELQAYFGGDARVSLLHGKMKSDEKEAIMQAFKNKEVD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATIMVIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILT-----QDPDLTSVRGQSIRILLYLYQYN 691
             I+      QDPD          ++L+L + +
Sbjct: 643 SQIVQDRHWRQDPDWHL-------VVLHLEEQD 668


>gi|312127713|ref|YP_003992587.1| ATP-dependent DNA helicase recg [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777732|gb|ADQ07218.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 679

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 239/664 (35%), Positives = 379/664 (57%), Gaps = 17/664 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +N L   +   +GVG+       K+         +  DLL++ P  ++D     KI E+ 
Sbjct: 1   MNVLEKDIRFLKGVGENREKLFKKL------GIKKAEDLLWHIPRKYLDYSRLKKIRELC 54

Query: 66  EERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           +  I +    ++      + +  +  KI + D TG +T ++F +  + +KNV  EG    
Sbjct: 55  DGEIESFVAKVAGKPVEIETKSVKIIKIPVEDSTGVVTTVWFNQ--DYIKNVLKEGEIFC 112

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183
            +GKI++    I + +P +  ++   ++   I  VY+   GLS  + + I+   L ++  
Sbjct: 113 FSGKIERKGFYIEVKNPEFEKYDQHLLHTGRIVPVYNSTEGLSQKVIRNIVNNLLKQVDG 172

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           +L + I   + QK +   I  A   IH P      E     R+RL ++E    Q++LLL+
Sbjct: 173 MLIDIIPPYIRQKYNLSEINFAIKNIHFPENKLSLELA---RKRLVFEEFYLLQLSLLLL 229

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++  +K  GI I       ++  + +PF  T++Q+  + +I QD+    +M R++QGDVG
Sbjct: 230 KENIEKNEGIKIENVQSSLKEFEKLLPFELTEAQKRVLAEIAQDLESTKQMNRLIQGDVG 289

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
            GKT+VAL +  A ++AG Q  +MAP  +LA QHY   KKY  N +  V ++ G+ P+  
Sbjct: 290 CGKTVVALASAYATIKAGYQVALMAPTEVLALQHYNECKKYFGN-KFNVRLLIGSTPKKE 348

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +   L+ + HG   ++IGTHAL QD +++  L L I DEQHRFGV QR++LT+K ++P++
Sbjct: 349 KEIILKELEHGLCKMVIGTHALIQDEVKFKNLGLAITDEQHRFGVIQRVELTKKGSSPNI 408

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL L   GD+DIS I + P GRK I T  +  +    V   +K  L EG+
Sbjct: 409 LVMTATPIPRTLSLVLYGDLDISIIDQLPPGRKKILTYAVDESFRQRVYNFIKKQLDEGR 468

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           + YWICP IEE +  N +S VE   SL E F    +I  +HG++S  +++ +++ FK+G 
Sbjct: 469 QVYWICPLIEESETLNAKSAVEFAKSLKEGFFKDYNIGCLHGKLSAKERDKILNDFKDGH 528

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTV+EVGI+V +A++++IENAE FGLAQLHQLRGRVGRGE  S CIL ++   S
Sbjct: 529 IHILVSTTVVEVGINVPNATVMVIENAERFGLAQLHQLRGRVGRGEHQSYCIL-FNQSDS 587

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + +  R+  +  +++GF IAE DLK R  G++ G KQ G+  F +A       +L+ AR 
Sbjct: 588 EITKKRMIAITRSQNGFEIAEMDLKLRGPGDLFGTKQHGVMNFKVADIINDMDILKQARI 647

Query: 662 DAKH 665
            A+ 
Sbjct: 648 AAEE 651


>gi|299144503|ref|ZP_07037582.1| ATP-dependent DNA helicase RecG [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298517591|gb|EFI41331.1| ATP-dependent DNA helicase RecG [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 680

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 235/686 (34%), Positives = 375/686 (54%), Gaps = 25/686 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR      L   +   +GVG K     +++            DLL Y P  + D+    K
Sbjct: 1   MR------LEDTIRYLKGVGPKREKKFNEL------GIFTIRDLLTYFPRDYDDQSNFKK 48

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILL--NDGTGEITLLFFYRKTEMLKNVFF 118
           + E   +   T           +  ++  +       D +G+  + FF    + +KN   
Sbjct: 49  LYEAIIDEKATFRVKFLSVLENRKIRKNLFITTFLAEDSSGQAKISFFN--MKFIKNQIS 106

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
              +  V+GK+ + K ++ + +P +   +  +     I  +Y L  G+  +    ++ +A
Sbjct: 107 LNDEYLVSGKVNRFKGQVQITNPTFEKASDAN-RVGTIYPIYPLKKGVFNNEIVNLVHQA 165

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           +  + +  E + + L++K +     EA   IH P   K F     AR+RL ++ELL  Q+
Sbjct: 166 VE-MNLFEENLPQYLVKKYNLMDKNEAIKNIHMPYDKKSF---IRARQRLVFEELLIFQL 221

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           ++ +++ Q +    IP  ++ +I +  + N+PF  T  Q+  + +I +DM   NRM R+L
Sbjct: 222 SIFMLKNQDEIVKVIPYKIDDRIYK-FIDNLPFLLTDGQKRVVDEIFEDMKSGNRMNRLL 280

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT++A+I+M  A   G Q+ IMAP  ILA+QH E  +   +   + VE++ G+
Sbjct: 281 QGDVGSGKTIIAIISMYLAYLNGYQSTIMAPTEILAKQHLESFRNILEPLGVKVELLVGS 340

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
             + +R + L  I +G+  I+IGTHAL +D++++  L L I DEQHRFGV+QR  L  K 
Sbjct: 341 TTKKNRDRILTGIYNGEIDILIGTHALIEDTVEFKNLGLNITDEQHRFGVRQRQTLNTKE 400

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
              H L+MTATPIPRTL L   GD+ IS I   P  RK I T+ I  + ++  +  ++  
Sbjct: 401 KTAHTLVMTATPIPRTLALILYGDLSISTIDTLPPNRKKIDTIAINESMLNRGLSFIREQ 460

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDS 536
           + +G++AY ICP IEE +  +  S  E FN L +++ S   +A++HG+MS  +K SVM  
Sbjct: 461 VKKGRQAYIICPLIEESENFDLDSATEVFNDLRKNYFSDIRVALLHGKMSSDEKNSVMQD 520

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+G   ++++TTVIEVG++V +A++I+I NAE FGLAQLHQLRGRVGR    S CIL Y
Sbjct: 521 FKDGCTDIIVSTTVIEVGVNVPNATVILIYNAERFGLAQLHQLRGRVGRSVHKSYCIL-Y 579

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           +   SK S+ R+ V+  + DGF IA +DL  R  G+I G +QSG+ +  +A       +L
Sbjct: 580 NSSNSKVSWQRMKVMTESTDGFYIANKDLSIRGSGDIFGTRQSGIMELKLADLVRDTEIL 639

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIR 682
           + A  +A+ IL  D  L   +  ++R
Sbjct: 640 KYATIEAREILKDDRKLIENKNSNLR 665


>gi|212691804|ref|ZP_03299932.1| hypothetical protein BACDOR_01299 [Bacteroides dorei DSM 17855]
 gi|237708604|ref|ZP_04539085.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 9_1_42FAA]
 gi|237724128|ref|ZP_04554609.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D4]
 gi|265755202|ref|ZP_06089972.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_33FAA]
 gi|212665705|gb|EEB26277.1| hypothetical protein BACDOR_01299 [Bacteroides dorei DSM 17855]
 gi|229437588|gb|EEO47665.1| ATP-dependent DNA helicase RecG [Bacteroides dorei 5_1_36/D4]
 gi|229457304|gb|EEO63025.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 9_1_42FAA]
 gi|263234344|gb|EEZ19934.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_33FAA]
          Length = 698

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 245/692 (35%), Positives = 382/692 (55%), Gaps = 22/692 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVT 71
           +   +GVG + +  L+K +     N     DLL+Y P  ++DR     I EI      + 
Sbjct: 9   IKYLQGVGPQRATVLNKEL-----NLFSLHDLLYYFPYKYVDRSRLYYIHEIDGNMPYIQ 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I    +F   ++R      +DGTG I L++F +  + L   +    +  V GK   
Sbjct: 64  LKGEILSFETFGEGRQRRLVGHFSDGTGIIDLVWF-QGIKYLLEHYKTKTEYIVFGKPTV 122

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEALSRL-PVL 185
              RI + HP         ++   ++  Y+         L+    ++++  AL+ L   L
Sbjct: 123 FNGRINVAHPDMDPSGELTLSTMGLQPYYNTTERMKRGFLNSHGLERLMKNALALLQEPL 182

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM-R 244
            E +   L+++    S+ EA   IH P+     E    A+ RL ++EL   Q+ +L   +
Sbjct: 183 AETLPPQLVEEHHLMSLDEAIRNIHFPKNP---ELLRKAQYRLKFEELFYVQLNILRYSK 239

Query: 245 KQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + +K  G+     G+I      +N+PF  T +Q+  IK+I +DM    +M R+LQGDVG
Sbjct: 240 DRQRKYRGLRFERVGEIFNTFYSQNLPFELTGAQKRVIKEIRKDMGSGRQMNRLLQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVAL++M  A++ G QA +MAP  ILA QHYE I+K+     + VE++ G++    
Sbjct: 300 SGKTLVALMSMLIALDNGYQACMMAPTEILAAQHYETIRKFLFGMDVRVELLMGSVKGKK 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAPH 422
           R K L  +  G   I+IGTHA+ +D++ +  L +V++DEQHRFGV QR KL  +    PH
Sbjct: 360 REKILRDLLTGDVQILIGTHAVLEDTVGFSSLGMVVIDEQHRFGVAQRAKLWSKNVCPPH 419

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    NR   +   ++  + EG
Sbjct: 420 VLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRRASLYASIRKQIEEG 479

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++ Y + P I+E ++ + +++ E +  +   F    ++ +HG+M   +K++ M  F +G 
Sbjct: 480 RQIYIVYPLIKESEKMDIKNLEEGYELICAEFPDCQVSKVHGKMKPAEKDAEMQRFVSGD 539

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL+    L+
Sbjct: 540 TQIMVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLT 599

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIAR 660
           + +  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA       LL+  R
Sbjct: 600 EETRKRLEIMVQTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQYVR 659

Query: 661 KDAKHILTQDPDLTSVRGQSI-RILLYLYQYN 691
             A  I+ +DP  T      + R L  L + N
Sbjct: 660 DVANRIVDEDPTGTRPENAILWRQLQALRKTN 691


>gi|329850697|ref|ZP_08265542.1| DEAD/DEAH box helicase family protein [Asticcacaulis biprosthecum
           C19]
 gi|328841012|gb|EGF90583.1| DEAD/DEAH box helicase family protein [Asticcacaulis biprosthecum
           C19]
          Length = 688

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 280/692 (40%), Positives = 404/692 (58%), Gaps = 11/692 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L P +A ++T +GVG K +  L++ +           DL F+ PS  I +     
Sbjct: 1   MRPEILFPYYADVTTLKGVGPKLAPVLAQHVGSH------IRDLAFFLPSGVI-KRPLVP 53

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           ++      + T+   I+ +     +   P +I   D T  +TL++F+R     +     G
Sbjct: 54  LNRARIGEVQTVAVTIAGYPPAPAKG--PQRIETVDDTTRLTLVYFHRIRGF-ETQHPVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            K  ++GK++   N++ M HP Y+   ++    P  E VY     L     +K++  ALS
Sbjct: 111 SKRLISGKLESFNNQLQMPHPDYLVDEARAAEIPACEPVYPATLDLGSRTLRKLVQGALS 170

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
             P LPEW++  ++ K  +PS   A    H P    D +  +  R+RLAYDE LA Q+A 
Sbjct: 171 ITPELPEWLDLAMVDKYLWPSFHAALAAAHTPLSELDLDPDAKPRQRLAYDEALAHQLA- 229

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L  RKQF++     +      A + L  +PF+ T +Q  A+ DI  D+   +RM R++QG
Sbjct: 230 LKARKQFRQNTPSRVIDRHAWADRALTTLPFAMTGAQVRALADIRGDLRSGHRMNRLVQG 289

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG+GKTLVAL+AM    E G Q+V+MAP  ILA+QH+E      +   I   I+TG   
Sbjct: 290 DVGAGKTLVALMAMIDVAEDGLQSVLMAPTEILARQHFEKSHSILEALGISSTIMTGRDK 349

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R +    +A G+A ++ GTHA+FQ+ + ++ L L ++DEQHRFGV QR KL  K  A
Sbjct: 350 GKERDRKRAAVASGEAQVVFGTHAVFQEGVDFHSLQLAVIDEQHRFGVGQRQKLFSKGEA 409

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            H L M+ATPIPRTL LT  G+ D+S + EKPAGR+PI T ++P  R+ +V+ RLK  L+
Sbjct: 410 VHYLSMSATPIPRTLALTQYGEADLSILDEKPAGRQPIHTAVVPRARLADVMHRLKGALA 469

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +G++AYW+CP +E+  ES+  +  +R   L E     + ++HGRM    K++V+  F  G
Sbjct: 470 DGQQAYWVCPLVEDTAESDLIAAEKRHEELQEALGIEVGLVHGRMPSETKDNVVTRFAAG 529

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L ATTV+EVGIDV  ASIIIIE AE FGLAQLHQLRGRVGRG   S+CILLY  PL
Sbjct: 530 ELRVLCATTVVEVGIDVPTASIIIIEQAERFGLAQLHQLRGRVGRGAAKSACILLYDSPL 589

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           SKN+  RL +L++TEDGF IAE D K R EG+ILG KQSG P +    P  H +L+ +A 
Sbjct: 590 SKNAKARLELLRDTEDGFKIAEMDWKLRGEGDILGAKQSGFPDYRFVDPVRHTALIALAA 649

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           ++A +IL Q   L + R ++I +L  L+ +  
Sbjct: 650 REAVYILHQGDALPAPRRKAIEVLKQLFDWRA 681


>gi|254882342|ref|ZP_05255052.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 4_3_47FAA]
 gi|319640606|ref|ZP_07995325.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_40A]
 gi|254835135|gb|EET15444.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 4_3_47FAA]
 gi|317387776|gb|EFV68636.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_40A]
          Length = 698

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 242/681 (35%), Positives = 377/681 (55%), Gaps = 21/681 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVT 71
           +   +GVG + +  L+K +     N     DLL+Y P  ++DR     I EI      + 
Sbjct: 9   IKYLQGVGPQRATVLNKEL-----NLFSLHDLLYYFPYKYVDRSRLYYIHEIDGNMPYIQ 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I    +    ++R      +DGTG I L++F +  + L   +    +  V GK   
Sbjct: 64  LKGEILSFETLGEGRQRRLVGHFSDGTGIIDLVWF-QGIKYLLEHYKTRTEYIVFGKPTV 122

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEALSRL-PVL 185
              RI + HP         ++   ++  Y+         L+    +K++  AL+ L   L
Sbjct: 123 FNGRINVAHPDMDPSGELTLSTMGLQPYYNTTERMKRGFLNSHGLEKLMKNALALLQEPL 182

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM-R 244
            E +   L+++    S+ EA   IH P+     E    A+ RL ++EL   Q+ +L   +
Sbjct: 183 AETLPPRLVEEHHLMSLDEAIRNIHFPKNP---ELLRKAQYRLKFEELFYVQLNILRYSK 239

Query: 245 KQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + +K  G+     G+I      +N+PF  T +Q+  IK+I +DM    +M R+LQGDVG
Sbjct: 240 DRQRKYRGLRFERVGEIFNTFYSQNLPFELTGAQKRVIKEIRKDMGSGRQMNRLLQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVAL++M  A++ G QA +MAP  ILA QHYE I+K+     + VE++ G++    
Sbjct: 300 SGKTLVALMSMLIALDNGYQACMMAPTEILAAQHYETIRKFLFGMDVRVELLMGSVKGKK 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAPH 422
           R K L+ +  G   I+IGTHA+ +D++ +  L +VI+DEQHRFGV QR KL  +    PH
Sbjct: 360 REKILKDLLTGDVQILIGTHAVLEDTVGFSSLGMVIIDEQHRFGVAQRAKLWSKNVCPPH 419

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    NR   +   ++  + EG
Sbjct: 420 VLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRRASLYASIRKQIEEG 479

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++ Y + P I+E ++ + +++ E +  +   F    ++ +HG+M   +K++ M  F +G 
Sbjct: 480 RQIYIVYPLIKESEKMDIKNLEEGYELICAEFPDCQVSKVHGKMKPAEKDAEMQRFVSGE 539

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL+    L+
Sbjct: 540 TQIMVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLT 599

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIAR 660
           + +  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA       LL+  R
Sbjct: 600 EETRKRLEIMVQTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQYVR 659

Query: 661 KDAKHILTQDPDLTSVRGQSI 681
             A  I+ +DP  T      +
Sbjct: 660 DVANRIVDEDPAGTHPENAIL 680


>gi|149183210|ref|ZP_01861656.1| ATP-dependent DNA helicase [Bacillus sp. SG-1]
 gi|148849075|gb|EDL63279.1| ATP-dependent DNA helicase [Bacillus sp. SG-1]
          Length = 682

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 235/687 (34%), Positives = 371/687 (54%), Gaps = 24/687 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  LF  P++  +G+G + +L L+ +      N     +L+ Y P  + D      ++E 
Sbjct: 1   MTDLFQIPVTEIKGIGDETALQLASM------NVQSVGELIEYVPYRYEDYR-LKDLAEA 53

Query: 65  SEERIVTITGYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
             E  VT+ G I    S     R+     + L  G+  I   FF +    LK        
Sbjct: 54  ENEERVTVEGKIHSAPSLMFYGRKKSRLNVRLLAGSYLIQATFFNQ--PYLKKKLNLQDT 111

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           ITVTGK  K +  I +      +           E VYSL   +     +K I  A    
Sbjct: 112 ITVTGKWDKNRQIITVQQ----YSLGPHTAKGDFEPVYSLKGSIKNQSLRKYIRTAFEHY 167

Query: 183 -PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              + E I   L  +    +  EA   +H P           AR R+ Y+E L  Q+ + 
Sbjct: 168 GNEIHEPIPGSLRTEYKLLNRKEALFNLHFPSSPNSL---KHARRRMVYEEFLLFQLKMQ 224

Query: 242 LMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            +RK + +   GI  N + +  ++ + ++PF  T +Q+  + +I  DM    RM R+LQG
Sbjct: 225 ALRKFEREHSNGISQNYDLQKVKEFINSLPFPLTDAQKRVVNEISADMKSPYRMNRLLQG 284

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA IA+ +++ AG Q  +M P  ILA+QH E + +      I   ++T ++ 
Sbjct: 285 DVGSGKTVVAAIALFSSITAGYQGALMVPTEILAEQHAESLSELLAPAGINTALLTSSVK 344

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R+  L+++A G+  ++IGTHAL QD + +  L +VI DEQHRFGVQQR  L +K  +
Sbjct: 345 GKRRKLLLQKLADGEIDVLIGTHALIQDEVNFKNLGMVITDEQHRFGVQQRRVLREKGES 404

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL MTATPIPRTL +T  G++D+S I E PAGRK I+T     ++++ V++ ++  LS
Sbjct: 405 PDVLFMTATPIPRTLAITVFGEMDVSIIDEMPAGRKTIETYWAKQDKLERVLDFMEKELS 464

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFK 538
           +G++AY ICP IEE  + + ++ ++    L  +F     + ++HGR+   +K+ VM +F 
Sbjct: 465 QGRQAYVICPLIEESDKLDVQNAIDVHAQLEFYFQDRYKVGLMHGRLHSDEKDEVMKAFS 524

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S CILL  P
Sbjct: 525 RNEIQVLVSTTVVEVGVNVPNATMMVIYDAERFGLSQLHQLRGRVGRGSEQSYCILLADP 584

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             +     R+ ++  T DGF ++E+DL+ R  G+  G KQSG+P+F +A        LE+
Sbjct: 585 K-TDVGKERMRIMAETNDGFELSEKDLELRGPGDFFGKKQSGLPEFKVADMIHDYRALEV 643

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILL 685
           AR DA+ ++  D    +   +++R  L
Sbjct: 644 ARNDAQRLIQSDEFWHASEYEALRRFL 670


>gi|154249701|ref|YP_001410526.1| ATP-dependent DNA helicase RecG [Fervidobacterium nodosum Rt17-B1]
 gi|154153637|gb|ABS60869.1| ATP-dependent DNA helicase RecG [Fervidobacterium nodosum Rt17-B1]
          Length = 776

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 254/701 (36%), Positives = 374/701 (53%), Gaps = 24/701 (3%)

Query: 4   SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
               PL  P+   +GVG      L K+            DL+ Y P  + DR     I  
Sbjct: 96  DVPKPLDTPIKYAKGVGPSREKLLKKL------GIETIGDLINYFPRDYEDRRKIIPIVF 149

Query: 64  ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           I E   VT  G I      +         LL DG  ++ L +F ++ + L+      +++
Sbjct: 150 IRENEKVTTKGIIKSVEKIKKGDLVIISALLQDGISQVVLKWFNQEFKELELKQLINKEV 209

Query: 124 TVTGKIKK-LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
            V+G  K+     I + +P     NS +     I  +Y L   L+    +KII + +S +
Sbjct: 210 YVSGTPKRGFFGAIEIQNPEISLSNSPERE---IIPIYPLTENLTQKTLRKIIEDNISAV 266

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
               + I  ++++ +    I  A+  +H PR +        +R+RLAY+ELL  Q+AL +
Sbjct: 267 CNYQDVIPNEIVEIRKLLDIKRAYIGMHFPRSSF---HQKLSRKRLAYEELLLFQLALFI 323

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            RK  +K  GI   + G++A+K + ++PF  T +Q  A  +I QD+   N M R+LQGDV
Sbjct: 324 SRKNVEKIGGIAKQLSGQLAEKFVNSLPFKLTNAQIRAHNEIRQDLMSPNPMNRLLQGDV 383

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A+    EAG Q+ +M P  ILA QHY+ I  +  N  I V ++ G+  Q 
Sbjct: 384 GSGKTLVAELAIIDNYEAGFQSALMVPTSILAIQHYQKIFNHLTNLGIRVALLIGSTSQK 443

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            + K    + +G   +IIGTHAL Q+ + +  L LVI+DEQHRFGV+QR +L  K     
Sbjct: 444 EKDKIKFALKNGDLDVIIGTHALIQEDVHFANLGLVIIDEQHRFGVKQREELISKGKVVD 503

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE- 481
            L+MTATPIPRTL LT  GD+D+S I E P GRK IKT  +   R  EV + +K  + E 
Sbjct: 504 TLIMTATPIPRTLSLTLYGDLDVSIIDEMPPGRKEIKTFTLKHTRAKEVYKFVKDQIIEN 563

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKN 539
           G +AY + P IE+  + N ++  + +  L +   + I   ++HGRMSD +K  VM  F  
Sbjct: 564 GDQAYIVYPLIEQSDQINAKAAEDMYEKLSKEAFADIPMGLLHGRMSDFEKNEVMSKFVK 623

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  K+L++T+VIEVG+DV +A+I++IENAE FGLAQLHQLRGRVGRG + S C L+    
Sbjct: 624 GEIKILVSTSVIEVGVDVPNATIMVIENAERFGLAQLHQLRGRVGRGSKQSYCFLIVS-E 682

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             + ++ RL    +T DGF +AE D++ R  GE  G +Q GM  F +A       L+ +A
Sbjct: 683 AGEEAWDRLQFFASTTDGFKVAEYDMRLRGPGEFFGTRQHGMMDFKVADLISDSELIMLA 742

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R+DAK I+         R +S  I      Y +  + +  G
Sbjct: 743 REDAKWIIEN-------RAESSIIKKVFELYGDRIKLLDVG 776


>gi|116513187|ref|YP_812094.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116108841|gb|ABJ73981.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 681

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 239/675 (35%), Positives = 372/675 (55%), Gaps = 32/675 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG K      K+            DLL Y P  + D   R  + E+ +  
Sbjct: 18  LTDSVQFLKGVGPKSVENFHKL------GIFTVQDLLLYFPFRYEDFASR-SVFELVDGE 70

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             TI G +   ++ Q    KR      + +G   + + FF +    L N    G++I V 
Sbjct: 71  KATIIGTVVTPANVQYYGFKRNRLSFKIKEGEAVVAVSFFNQ--PYLANKVEVGKEIAVY 128

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPV 184
           GK ++ K +++ +    +     D     +E VY L  G+      K+I +      L  
Sbjct: 129 GKWEQAKQQLMGMK---VVAQVDDG----LEPVYHLTAGMKQSQLVKVIHQVFESGLLSE 181

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE + + L++K    +  EA   +H P   +D E    A  R+ ++EL   Q+ L  ++
Sbjct: 182 LPENLPEFLIEKYRLMNRQEAVLAMHFP---EDMEAHKQALRRVKFEELFMFQLKLQALK 238

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K    G+ +  E +   K + ++PF  T  Q  A+ +IL DM     M R+LQGDVG
Sbjct: 239 NKEKSGRAGLQVIFEQEEIDKKISDLPFELTGGQSRALTEILDDMKSPYHMNRLLQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA ++M AA  A  QA IM P  ILA+QH+  ++      Q  + ++   +  A 
Sbjct: 299 SGKTVVASLSMYAACLANFQAAIMVPTEILARQHFANLQALFPELQ--ISLLVSGLKAAE 356

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  +A G  H+++GTHAL Q+ + +Y L LVI DEQHRFGV QR  L +K   P V
Sbjct: 357 RREILADLASGHTHMVVGTHALIQEGVDFYNLGLVITDEQHRFGVNQRKILREKGQNPDV 416

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I E P GR+PI T  +   +  EV+  +K  ++   
Sbjct: 417 LMMTATPIPRTLAITAFGDMDVSIIDELPKGRQPITTRWVKHEQFSEVLSWVKGEVANDS 476

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++    F  L+++F   + I ++HG+M + +K+ +M  FK   
Sbjct: 477 QVYFISPLIEESETLDLKNAEALFAELNDYFGLFAKIGLLHGKMKNDEKDQIMQEFKAKK 536

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG+DV +A+I++I +A+ FGL+QLHQLRGRVGRG + S  IL+ +P  S
Sbjct: 537 LDILVSTTVIEVGVDVPNATIMVIMDADRFGLSQLHQLRGRVGRGTKKSYAILVANPK-S 595

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R+ ++  T++GF++AEEDLK R  GEI G++QSG+P+F+ A      ++LE+AR+
Sbjct: 596 DSGKQRMKIMTETQNGFVLAEEDLKMRGSGEIFGLRQSGLPEFIAADLVNDYNILEVARQ 655

Query: 662 DAKHIL---TQDPDL 673
           +A  I     + PDL
Sbjct: 656 EAVEIFKKADEFPDL 670


>gi|323353284|ref|ZP_08087817.1| DNA helicase RecG [Streptococcus sanguinis VMC66]
 gi|322121230|gb|EFX92993.1| DNA helicase RecG [Streptococcus sanguinis VMC66]
          Length = 671

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 239/688 (34%), Positives = 385/688 (55%), Gaps = 27/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D      + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL------GLETLQDLLLYFPFRYEDF-KSKNVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    +    +D     ++ VY L  G+S     K+I  A  +    +L 
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S  EA   +H P+   D+     A  R+ ++EL   Q+ L +++++
Sbjct: 169 ENLPQPLLERYQLVSRVEAVRAMHFPKDLADY---KQALRRVKFEELFYFQMQLQVLKRE 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVGSG
Sbjct: 226 TKAVSNGLKIDWQLDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A RR
Sbjct: 286 KTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I  GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P VL+
Sbjct: 344 ETLAAIEKGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ LK  L +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGAQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ +     L  +F     +A++HG+M   +KE++M  FK G   
Sbjct: 464 YFISPLIEESEALDLKNAIALEEELTAYFGQQVQVALLHGKMKSEEKEAIMQDFKEGRTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYN 691
             I T D +  +     + I L+L + +
Sbjct: 643 SQI-TADSNWRTDPNWHL-IALHLDKRD 668


>gi|270308438|ref|YP_003330496.1| ATP-dependent DNA helicase [Dehalococcoides sp. VS]
 gi|270154330|gb|ACZ62168.1| ATP-dependent DNA helicase [Dehalococcoides sp. VS]
          Length = 818

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 222/699 (31%), Positives = 363/699 (51%), Gaps = 37/699 (5%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L   +S  +G+    +    K+            DLL+Y P+  +D     KIS++   
Sbjct: 119 ALDGDISLVKGISAATAPKFHKM------GINTVRDLLYYFPNRHLDYSRLKKISQLEAG 172

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
              TI   + Q     +  RR  + +L D TG +  ++F      +        ++ ++G
Sbjct: 173 SEQTIIANVWQSKVNYMGGRRSTEAVLGDDTGNMRAVWFNN--PYMVRNLKPNARVVLSG 230

Query: 128 KIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPV 184
           ++     R +   P +     +   ++   +  VY L  GL     ++++   +    P 
Sbjct: 231 RVSIFNGRPVFESPEWEELPDEADLIHTGRLVPVYPLTAGLHQRSLRRLMKNFIDISTPG 290

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + +++ +D L++     +AEA    H P      E    AR RLA+DEL   Q+ +L  +
Sbjct: 291 ISDFLPEDTLKRNRLLPLAEAIRQAHFPDTE---ELKDTARNRLAFDELFILQLGVLAKK 347

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           K+++++ G  + V        +  +PF  T +Q   + DI  D+S+   M R+LQG+VGS
Sbjct: 348 KRWQEQTGRALKVNLPAIDHFISRLPFKLTDAQTKCLADIKADISKNVPMSRLLQGEVGS 407

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ------------------ 346
           GKT+VA+I++  A   G Q   MAP  ILA+QH++ + +                     
Sbjct: 408 GKTIVAVISLFTAAANGLQGAFMAPTEILAEQHFKSVTRLFASIAKVSTLLDGVHTFEGL 467

Query: 347 -NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
            +  + V ++  +M  + +    E+I  G+  I IGTHAL Q  I++  L L ++DEQHR
Sbjct: 468 LDHPLRVALMISDMKSSQKDILKEKIKKGEIDIAIGTHALIQKEIRFKSLGLAVIDEQHR 527

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+QR  L  K   PH+L+MTATPIPRTL LT  GD+D+S I E P GR+ IKT  +  
Sbjct: 528 FGVEQRSALKSKGLNPHILIMTATPIPRTLALTLYGDLDLSVIDELPPGRQSIKTRWLKP 587

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHG 523
            + +     ++  +  G++A+ ICP +EE +    ++    + +L         +A++HG
Sbjct: 588 EQRNSAYNFIRKQIEAGRQAFIICPLVEESEAIQAKAATAEYETLSSEVFPEYKVALLHG 647

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           RM+  +KES+M  F  G   +L++T V+EVGID+ +A+++++E+A+ FGL+QLHQ RGRV
Sbjct: 648 RMNAAEKESIMKHFNEGKMDILVSTPVVEVGIDIPNATVMLVESADRFGLSQLHQFRGRV 707

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG E S C+ L   P S     RLS++++T+DGF +AEEDL+ R  GE  G +QSG+P 
Sbjct: 708 GRGTEQSYCMFLAKNP-SLLGQERLSIIESTQDGFKLAEEDLRLRGPGEFFGTRQSGLPD 766

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
             +A       LLE ARK+A  +   DP+L     +++ 
Sbjct: 767 LRMASIS-DVGLLEQARKEATRLFESDPELNLPENKALE 804


>gi|7839553|gb|AAF70323.1|AF260247_1 RecG [Vibrio cholerae]
          Length = 692

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 257/675 (38%), Positives = 384/675 (56%), Gaps = 24/675 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFFNF-TAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + ++HP Y F          P +  VY    GL     + +  +AL  L    + E
Sbjct: 121 GNQGLEIIHPDYKFFTPAQTPDVEPNLTPVYPTTEGLRQLTLRNLTDQALVLLEKSAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDQQ--MTLAQALKIIHRPSADIDLRLFEQGRHPAQIRLIMEELLAQNLSMLAI 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q ++++ +P+    ++ Q++L  +PFSPTK+Q+  + +I  D+++ + M+R++QGDVG
Sbjct: 239 RSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLAKPHPMMRLVQGDVG 298

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A   A+E G Q  +MAP  +LA+QH     ++ +   I V  + G +    
Sbjct: 299 SGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGKA 358

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KAT 419
           R   L RIA G+  +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +    +  
Sbjct: 359 RETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQGA 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T+  D++ S I E P G  PI+TV IP  + DE++ER++   
Sbjct: 419 YPHQLIMTATPIPRTLGMTAYADLETSVIDELPPGGTPIQTVAIPDTKRDEIVERIRHAC 478

Query: 480 S-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             EGK+AYW+C  I+E +    ++  E    L        I ++HGRM   +K++VM +F
Sbjct: 479 FNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K     L +ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL+H
Sbjct: 539 KTIELHLFVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+ 
Sbjct: 599 APLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQQLVP 658

Query: 658 IARKDAKHILTQDPD 672
             ++ A+HI  + P 
Sbjct: 659 QVQRIARHIHERYPQ 673


>gi|262373537|ref|ZP_06066815.1| ATP-dependent DNA helicase RecG [Acinetobacter junii SH205]
 gi|262311290|gb|EEY92376.1| ATP-dependent DNA helicase RecG [Acinetobacter junii SH205]
          Length = 681

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 254/684 (37%), Positives = 388/684 (56%), Gaps = 23/684 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             +   +GVG   +  L K+      +     DLLF+ P  + DR     ++++   R  
Sbjct: 2   TSVQQLQGVGAAAASLLEKL------HIFSTDDLLFHLPRDYEDRSTIIPMNQLVVGRSY 55

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G +     F   K++ +  LL D  G++TL  FY   + L +    G ++ + G+++
Sbjct: 56  LLEGEVKSI-DFPPGKKKSFAALLQDDFGKVTLR-FYHIYKGLTDRIKPGARLRIFGEVR 113

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
                + + HP   +      +    + A+Y    GL+    ++ + +AL      LPE 
Sbjct: 114 VGARGLELYHPEIQVIQRHTALPKTQLTAIYPSTEGLTQPKLREYVRQALEHHSDALPEL 173

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244
           +            + EA + IH P    +     + + PA++RL ++EL+A QI+LL  R
Sbjct: 174 LPAKYSNGY---ELKEALHYIHEPPIDANMVQLNQGSHPAQQRLIFEELVAHQISLLTRR 230

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              ++      +    +A+++L  +PF  T +Q+   K+IL D+ Q   MLR++QGDVG+
Sbjct: 231 AYIRQIAAPRFSSSKVLAKRLLDALPFQMTNAQKRVSKEILHDLKQDQPMLRLVQGDVGA 290

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA +A   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R
Sbjct: 291 GKTLVAAVAACHALEAEWQVALMAPTEILAEQHYLNFKRWFEPLGIKVAWLSGKQKGKAR 350

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP--- 421
             A + I  G + +++GTHALFQ+++++ KL LVI+DEQHRFGV QRL L  K       
Sbjct: 351 TLAEQEIKEGHSQLVVGTHALFQNNVEFSKLGLVIIDEQHRFGVDQRLALRNKGVDQFTP 410

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     E
Sbjct: 411 HQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLQRIASNCRE 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           GK+AYW+C  +E+ +  + ++    F  + E F   ++ ++HG+M   +K++VM +FK+ 
Sbjct: 471 GKQAYWVCTLVEQSETLDAQAAEATFQEIKERFPDLNVGLVHGKMKADEKQAVMQAFKDN 530

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG   S C LLY  PL
Sbjct: 531 QSQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGATASFCALLYKTPL 590

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A 
Sbjct: 591 SQNGQERLSILRESNDGFVIAEKDLEIRGPGELLGTKQTGDMGFRVARLERDDHLLTQAH 650

Query: 661 KDAKHILTQDPDLTSVRGQSIRIL 684
             A+ +L   P      G   R L
Sbjct: 651 YVAEQLLKDYP--QHAEGLLKRWL 672


>gi|158338329|ref|YP_001519506.1| ATP-dependent DNA helicase RecG [Acaryochloris marina MBIC11017]
 gi|158308570|gb|ABW30187.1| ATP-dependent DNA helicase RecG [Acaryochloris marina MBIC11017]
          Length = 818

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 229/686 (33%), Positives = 393/686 (57%), Gaps = 29/686 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+ +  G+G K +  L K+            DLLFY+P   ID   +  I ++ E  
Sbjct: 121 LDLPILSLSGIGPKSAQKLEKL------GLFSVRDLLFYYPRDHIDYARQVSIRDLEEGA 174

Query: 69  IVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEM--------LKNVF 117
            VT+   + + + F   +     I   ++ D TG++ L  FY              K ++
Sbjct: 175 TVTLVATVRRVNCFSSPRNPKLTIFELVVKDATGQLKLSRFYAGNRFRSRGWQEQQKRLY 234

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFK 172
             G  +  +G +K  K  I + +P     N      + +    +  +Y+L  G++ DL +
Sbjct: 235 PPGAVVAASGLVKSSKYGITLDNPDLEVLNHSGDKIESMVIGRVVPIYALTEGVTPDLVR 294

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           + +V AL     L + + + L Q+ +   +  A   +H P  +   +     R RL +DE
Sbjct: 295 RAVVAALPAAKSLRDPLPEGLRQQNNLTDLPSAIADVHFPPDSDALDRA---RHRLIFDE 351

Query: 233 LLAGQIALL-LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
               Q+ +L   ++Q + +  +P++V G++ ++    +PF+ T +Q+  ++DIL D+   
Sbjct: 352 FFYLQLGMLVRRQQQRQTQESVPLSVHGELLERFYEVLPFTLTGAQKRVVQDILADLQST 411

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVGSGKT+VA+IA+ +A+++G Q  +MAP  +LA+QHY  + ++     + 
Sbjct: 412 QPMNRLVQGDVGSGKTVVAVIALLSAIQSGYQTALMAPTEVLAEQHYHKLVEWFNQLHLP 471

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V+++TG+   A RR+  E++  G+  +++GTHAL QD++++ +L L ++DEQHRFGVQQR
Sbjct: 472 VDLLTGSTKAAKRRQIAEQLKTGELPLLVGTHALIQDNVEFDRLGLAVIDEQHRFGVQQR 531

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             L QK   PHVL MTATPIPRTL LT  GD+D+S+I E P GR+ I+T ++        
Sbjct: 532 ALLQQKGQHPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQAIQTTMLTTRDRAHA 591

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE--HFTSSIAIIHGRMSDID 529
            + ++  +++G++ Y + P +EE ++ + RS V+  + L         + ++HGR++  +
Sbjct: 592 YDLMRREIAQGRQIYIVLPLVEESEKLDLRSAVQEHDRLQTTIFPNFQVGLLHGRLTSAE 651

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE V+  F+  T  +L++TTV+EVG+D+ +A++++IE+A+ FGL+QLHQLRGRVGRG   
Sbjct: 652 KEEVISQFREHTLHILVSTTVVEVGVDIPNATVMLIEHADRFGLSQLHQLRGRVGRGAHQ 711

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+ +   ++ +  RL+VL+ ++DGF IAE DL+ R  GE+LG +QSG+P   +A  
Sbjct: 712 SYCLLM-NSSKTETARQRLAVLEQSQDGFFIAEMDLRFRGPGEVLGTRQSGLPDLALASL 770

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTS 675
                 LE+AR+ A+ +L +D  L +
Sbjct: 771 VDDQETLELARQAAEKVLEKDSTLGA 796


>gi|152976221|ref|YP_001375738.1| ATP-dependent DNA helicase RecG [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152024973|gb|ABS22743.1| ATP-dependent DNA helicase RecG [Bacillus cytotoxicus NVH 391-98]
          Length = 682

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 233/680 (34%), Positives = 377/680 (55%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++++  E  VT
Sbjct: 8   PVTDVKGIGTETSELLHEM------GIYTVAHLLEHFPYRYEDY-AMKDLADVKHEERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G I      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKIHSAPILQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLKLDEVVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    IE VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTISVS----ELHFGPFVRKQEIEPVYSVKGKLTVKQMRRFIAQALKEYGNAIVEL 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  +RK + 
Sbjct: 175 LPNGLLGRYKLLPRYEALRALHFPVNQEDL---KQARRRFVYEEFFLFQLKMQALRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G   +V  +  ++ +  +PF  T +Q+  I +IL+DM    RM R+LQGDVGSGKT
Sbjct: 232 ENSQGTKKDVSVEELKEFIDALPFPLTGAQQRVIAEILKDMRSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IA+ AA  A  Q  +M P  ILA+QH++ + +   +  + VE++T ++  A RR+ 
Sbjct: 292 VVAAIALYAAKLAHYQGALMVPTEILAEQHFQSLTEIFSHFHLSVELLTSSVKGARRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + ++KL LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHKLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  +   + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWTKHDMLDRVLNFVAKEVKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE VM+ F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGEFQVGLMHGRLSAQEKEEVMEQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGQ 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADIVHDYRALETARQDAAL 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++  +    + +  ++R+ L
Sbjct: 651 LVESEAFWHNEQYVALRMYL 670


>gi|303241725|ref|ZP_07328222.1| ATP-dependent DNA helicase RecG [Acetivibrio cellulolyticus CD2]
 gi|302590726|gb|EFL60477.1| ATP-dependent DNA helicase RecG [Acetivibrio cellulolyticus CD2]
          Length = 691

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 239/681 (35%), Positives = 367/681 (53%), Gaps = 18/681 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG+  +  L K+            D++ Y P  + DR    KI+E+ +  
Sbjct: 7   LKKNVQYIKGVGEARAKLLHKL------GIYDVEDIITYFPRDYEDRSRLKKINELIDGE 60

Query: 69  IVTITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
                G I+   S    ++    YK+L+ D TG IT  +F +    +  V   G +    
Sbjct: 61  SCAFEGIIASKVSQHRFRKGLTLYKVLIKDETGAITASWFNQ--HYIGKVLRIGERFIFF 118

Query: 127 GKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-V 184
           G+I      + +  P Y  H+  +  N   I  VY     L+ +  +  I  AL  +   
Sbjct: 119 GRISGRYKNLEVQSPVYEKHDIGEARNVLKIVPVYPSTADLTQNTIRATISSALEMVGGK 178

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L +++ K +L +     I  +   IH P+  +DF     AR RL ++EL   Q+ LL ++
Sbjct: 179 LEDFLPKSILSEHQLSEINYSIQQIHFPKSDEDF---KNARYRLVFEELFLLQLCLLSVK 235

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           K F+K+               ++ +PF  T +Q+   ++I +DM   N M R++QGDVGS
Sbjct: 236 KSFEKDKKGIEFKNVPEMDDFIKMLPFKLTNAQKKVFEEIEKDMESNNVMNRLVQGDVGS 295

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA++A+  A+  G Q  +M P  ILA+QHY+ I +      I   ++TG+  +  +
Sbjct: 296 GKTIVAVLALFKAIRNGYQGALMVPTEILAEQHYKSISELMGRYDINTALLTGSQTKKQK 355

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
            K LE I  G+  I+IGTHAL +D+I++  L LVI DEQHRFGV+QR  L++K   P  +
Sbjct: 356 TKILEEIKSGEVQIVIGTHALIEDNIEFKNLGLVITDEQHRFGVRQRSLLSKKGEDPDAI 415

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL L   GD+DIS I E P GRKP+KT  +     + +   +   + +G++
Sbjct: 416 VMTATPIPRTLALILYGDLDISIIDELPPGRKPVKTYPVDDGMRERINNFIIKEVRQGRQ 475

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP +EE +E N +S V+    + +       + +I+G+M   DKE VM SF  G  
Sbjct: 476 VYIVCPLVEESEEINAKSAVQHAEKIAKDDFKDLRVGLIYGKMKAKDKEEVMRSFVGGEI 535

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L++TTVIEVG++V +ASI++IENAE FGLAQLHQLRGRVGRGE  S CIL Y    ++
Sbjct: 536 DILVSTTVIEVGVNVPNASIMVIENAERFGLAQLHQLRGRVGRGEYQSHCIL-YSEGKTE 594

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ +++ T DGF+I+E+DL  R  GE  G +Q G+P+  IA       +L+ A++ 
Sbjct: 595 VCRERMKIMQKTNDGFIISEKDLDLRGPGEFFGTRQHGIPELKIANLYEDIDILKKAQEA 654

Query: 663 AKHILTQDPDLTSVRGQSIRI 683
           A  ++  D DL       ++ 
Sbjct: 655 AITLINDDKDLEREENFKLKT 675


>gi|150003059|ref|YP_001297803.1| ATP-dependent DNA helicase RecG [Bacteroides vulgatus ATCC 8482]
 gi|294775914|ref|ZP_06741413.1| ATP-dependent DNA helicase RecG [Bacteroides vulgatus PC510]
 gi|149931483|gb|ABR38181.1| ATP-dependent DNA helicase RecG [Bacteroides vulgatus ATCC 8482]
 gi|294450283|gb|EFG18784.1| ATP-dependent DNA helicase RecG [Bacteroides vulgatus PC510]
          Length = 698

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 242/681 (35%), Positives = 377/681 (55%), Gaps = 21/681 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVT 71
           +   +GVG + +  L+K +     N     DLL+Y P  ++DR     I EI      + 
Sbjct: 9   IKYLQGVGPQRATVLNKEL-----NLFSLHDLLYYFPYKYVDRSRLYYIHEIDGNMPYIQ 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I    +    ++R      +DGTG I L++F +  + L   +    +  V GK   
Sbjct: 64  LKGEILSFETLGEGRQRRLVGHFSDGTGIIDLVWF-QGIKYLLEHYKTRTEYIVFGKPTV 122

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEALSRL-PVL 185
              RI + HP         ++   ++  Y+         L+    +K++  AL+ L   L
Sbjct: 123 FNGRINVAHPDMDPSGELTLSTMGLQPYYNTTERMKRGFLNSHGLEKLMKNALALLQEPL 182

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM-R 244
            E +   L+++    S+ EA   IH P+     E    A+ RL ++EL   Q+ +L   +
Sbjct: 183 AETLPPRLVEEHHLMSLDEAIRNIHFPKNP---ELLRKAQYRLKFEELFYVQLNILRYSK 239

Query: 245 KQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + +K  G+     G+I      +N+PF  T +Q+  IK+I +DM    +M R+LQGDVG
Sbjct: 240 DRQRKYRGLRFERVGEIFNTFYSQNLPFELTGAQKRVIKEIRKDMGSGRQMNRLLQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVAL++M  A++ G QA +MAP  ILA QHYE I+K+     + VE++ G++    
Sbjct: 300 SGKTLVALMSMLIALDNGYQACMMAPTEILAAQHYETIRKFLFGMDVRVELLMGSVKGKK 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAPH 422
           R K L+ +  G   I+IGTHA+ +D++ +  L +VI+DEQHRFGV QR KL  +    PH
Sbjct: 360 REKILKDLLTGDVQILIGTHAVLEDTVGFSSLGMVIIDEQHRFGVAQRAKLWSKNVCPPH 419

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    NR   +   ++  + EG
Sbjct: 420 VLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRRASLYASIRKQIEEG 479

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++ Y + P I+E ++ + +++ E +  +   F    ++ +HG+M   +K++ M  F +G 
Sbjct: 480 RQIYIVYPLIKESEKMDIKNLEEGYELICAEFPDCQVSKVHGKMKPAEKDAEMQRFVSGE 539

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL+    L+
Sbjct: 540 TQIMVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCILVTTYKLT 599

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIAR 660
           + +  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA       LL+  R
Sbjct: 600 EETRKRLEIMVQTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQYVR 659

Query: 661 KDAKHILTQDPDLTSVRGQSI 681
             A  I+ +DP  T      +
Sbjct: 660 DVANRIVDEDPAGTRPENAIL 680


>gi|326407876|gb|ADZ64947.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis
           CV56]
          Length = 666

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 241/675 (35%), Positives = 372/675 (55%), Gaps = 32/675 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG K      K+            DLL Y P  + D   R  + E+ +  
Sbjct: 3   LTDSVQFLKGVGPKSVENFHKL------GIFTVQDLLLYFPFRYEDFASR-SVFELVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             TI G +   ++ Q    KR      + +G   + + FF +    L +    G++I V 
Sbjct: 56  KATIIGTVVTPANVQYYGFKRNRLSFKIKEGEAVVAVSFFNQ--PYLADKVEVGKEIAVY 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPV 184
           GK ++ K +++ +    +     D     +E VY L  G+      K+I +      L  
Sbjct: 114 GKWEQAKQQLMGMK---VVAQVDDG----LEPVYHLTAGMKQSQLVKVIHQVFESDLLSE 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE + + L++K    +  EA   +H P   +D E    A  R+ ++EL   Q+ L  ++
Sbjct: 167 LPENLPEFLIKKYRLMNRQEAVLAMHFP---EDMEAHKQALRRVKFEELFMFQLKLQALK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K    G+ +  E     + +  +PF  T +Q SA+ +IL DM     M R+LQGDVG
Sbjct: 224 NKEKSGRAGLEVVFEQGEIDQKISELPFELTGAQLSALSEILTDMKSPYHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM AA  A  QA IM P  ILA+QH+  +K      Q  + ++   +  A 
Sbjct: 284 SGKTVVASLAMYAACLANFQAAIMVPTEILARQHFANLKALFPELQ--ISLLVSGLKVAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  +  G  H+++GTHAL Q+ + +Y L LVI DEQHRFGV QR  L +K   P V
Sbjct: 342 RREILADLVSGHTHMVVGTHALIQEGVDFYNLGLVITDEQHRFGVNQRKILREKGQNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I E P GR+PI T  +   +  EV+  +K  +++  
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDELPKGRQPITTRWVKHEQFSEVLSWIKAEVAKDS 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++    F  L+E+F   + I ++HG+M + +K+ +M  FK   
Sbjct: 462 QVYFISPLIEESETLDLKNAEALFAELNEYFGLFAKIGLLHGKMKNDEKDQIMQEFKAKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG+DV +A+I++I +A+ FGL+QLHQLRGRVGRG + S  IL+ +P  S
Sbjct: 522 LDILVSTTVIEVGVDVPNATIMVIMDADRFGLSQLHQLRGRVGRGTKKSYAILVANPK-S 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R+ ++  T++GF++AEEDLK R  GEI G++QSG+P+F+ A      ++LE+ARK
Sbjct: 581 DSGKQRMKIMTETQNGFILAEEDLKMRGSGEIFGLRQSGLPEFIAADLVNDYNILEVARK 640

Query: 662 DAKHIL---TQDPDL 673
           +A  I     + PDL
Sbjct: 641 EAVEIFKNADEFPDL 655


>gi|328553517|gb|AEB24009.1| ATP-dependent DNA helicase RecG [Bacillus amyloliquefaciens TA208]
          Length = 682

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 228/682 (33%), Positives = 368/682 (53%), Gaps = 23/682 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
              ++  +G+G +    L ++            DLL Y P  + D      + E+  E  
Sbjct: 6   QTSIAEIKGIGPETEKTLQEL------GIYDISDLLNYFPYRYDDY-ELRDLEEVKHEER 58

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTG 127
           VT+ G +    S     ++  ++      G   IT + F R    LK     G  +T++G
Sbjct: 59  VTVEGKVHSEPSLTYYGKKRNRLTFRVLVGNYLITAVCFNR--PYLKKKLTLGSVVTISG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLP 186
           K  K +  + +        N        IE VYS+   ++V + ++ I EAL   L  + 
Sbjct: 117 KWDKHRQTVSVQ----ELKNGPHQEDKSIEPVYSVKENVTVKMMRRFIKEALKHHLDNIA 172

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245
           + + + L      P   +A   +H P   +  +     R R  Y+E L  Q+ +   RK 
Sbjct: 173 DPLPEKLRISYKLPDYKQALQTMHQPETRESLQQA---RRRFVYEEFLLFQLKMQAFRKA 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + ++  GI      +       ++PFS T +Q   +++I  D++   RM R+LQGDVGSG
Sbjct: 230 EREQSKGISHVFPAEKLAAFTASLPFSLTNAQMRVLREITADLTSPYRMNRLLQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT VA I + AA+ +G Q  +M P  ILA+QH + +     N  + + ++T ++    RR
Sbjct: 290 KTAVAAITLYAAILSGYQGALMVPTEILAEQHADSLVSLFANEDVNIALLTSSVKGKRRR 349

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LER+A G+  I++GTHAL QD +++  L LVI DEQHRFGV QR KL  K   P VL 
Sbjct: 350 ELLERLALGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVDQRKKLRNKGQDPDVLF 409

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  G++D+S I E PAGRK I+T  +  + ++ ++  ++  L +G++A
Sbjct: 410 MTATPIPRTLAITVFGEMDVSVIDEMPAGRKQIETYWVKHDMLERILAFIEKELKQGRQA 469

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP IEE  + + ++ ++ +N L E +     + ++HG++   +K+ VM  F    C+
Sbjct: 470 YIICPLIEESDKLDVQNAIDVYNMLSEVYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQ 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTV+EVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG+  S CIL+  P  S+ 
Sbjct: 530 VLVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGDHQSFCILMADPK-SET 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGF ++E+DL+ R  G+  G KQSGMP+F +A        LE AR+DA
Sbjct: 589 GKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRALETARQDA 648

Query: 664 KHILTQDPDLTSVRGQSIRILL 685
            ++++ +        + +R  L
Sbjct: 649 ANLVSSEAFWKDDEYRMLRAQL 670


>gi|332363900|gb|EGJ41679.1| DNA helicase RecG [Streptococcus sanguinis SK355]
          Length = 671

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 242/688 (35%), Positives = 385/688 (55%), Gaps = 27/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D      + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL------GLETLQDLLLYFPFRYEDF-KSKNVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              I+G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVISGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    +    +D     ++ VY L  G+S     K+I  A  +    +L 
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +   LL+     S  EA   +H P+   D+     A  R+ ++EL   Q+ L +++++
Sbjct: 169 ENLPHPLLELYQLVSRVEAVRAMHFPKDFADY---KQALRRVKFEELFYFQMQLQVLKRE 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + I+       +  +++PF  T +QE ++ +ILQD+     M R+LQGDVGSG
Sbjct: 226 TKAVSNGLKIDWRSDTVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A RR
Sbjct: 286 KTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           K LE I  GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P VL+
Sbjct: 344 KTLEAIEKGQMDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ LK  L +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGAQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +K+++M  FK G   
Sbjct: 464 YFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKDAIMQDFKEGRTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKRRMKIMTETIDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYN 691
             I T DP+  +     + I L+L + +
Sbjct: 643 SQI-TADPNWRTDPNWHL-IALHLDKRD 668


>gi|328945679|gb|EGG39830.1| DNA helicase RecG [Streptococcus sanguinis SK1087]
          Length = 671

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 240/688 (34%), Positives = 386/688 (56%), Gaps = 27/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D      +  + +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFTKL------GLETLQDLLLYFPFRYEDF-KSKNVLGLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    +    +D     ++ VY L  G+S     K+I  A  +    +L 
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDLLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S  EA   IH P+   D+     A  R+ ++EL   Q+ L +++++
Sbjct: 169 ENLPQPLLERYQLVSRVEAVRAIHFPKDLADY---KQALRRVKFEELFYFQMQLQVLKRE 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVGSG
Sbjct: 226 TKAVSNGLKIDWQLDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A RR
Sbjct: 286 KTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLF--PELKLALLTGGMKAAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I  GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P VL+
Sbjct: 344 ETLSAIEKGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGR+PI T  +   +++ V++ LK  L +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRRPIITRWVKHEQLEVVLDWLKKELHKGAQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G   
Sbjct: 464 YFISPLIEESEALDLKNAIALEEELTAYFSQQAQVALLHGKMKSEEKEAIMQDFKEGRTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYN 691
             I T DP+  +     + I L+L + +
Sbjct: 643 SQI-TADPNWRTDPNWHL-IALHLDKRD 668


>gi|238797644|ref|ZP_04641140.1| ATP-dependent DNA helicase recG [Yersinia mollaretii ATCC 43969]
 gi|238718508|gb|EEQ10328.1| ATP-dependent DNA helicase recG [Yersinia mollaretii ATCC 43969]
          Length = 666

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 250/671 (37%), Positives = 378/671 (56%), Gaps = 20/671 (2%)

Query: 37  NETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLND 96
                 DLL + P  + DR    +I ++     VT+ G + + S     +RR     ++D
Sbjct: 2   GLETIQDLLLHLPLRYEDRTQLYRIGDLLPGISVTVEGEVLR-SDITFGRRRMMTCQISD 60

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFP 154
           G+G +TL FF     M KN    G+ +   G+ K+      ++HP Y  H          
Sbjct: 61  GSGVLTLRFFNFNAAM-KNSLSPGKHVIAYGEAKRGNTGPEIIHPEYRVHGENIGVELQE 119

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
            +  VY    G+     +K+I +AL+ L   V+ E +  +L   +S  S+ EA + +H P
Sbjct: 120 SLTPVYPTTEGIRQATLRKLIDQALAMLDTTVIAELLPIEL--SRSLISLPEAIHTLHRP 177

Query: 213 RK---AKDFE-WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
                  D E    PA+ RL  +ELLA  +++L +R   +    +P+  E ++  + L  
Sbjct: 178 PANIQLVDLEQGKHPAQRRLIMEELLAHNLSMLAVRAGAQSYRALPLLAEDQLKPRFLAA 237

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF+PT++Q+  + +I QDM+    M+R++QGDVGSGKTLVA +A   A+  G Q  +MA
Sbjct: 238 LPFTPTRAQQRVVAEIEQDMTHNFPMMRLIQGDVGSGKTLVAALAALRAIAHGKQVALMA 297

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LA+QH    +++ +   + V  + G      R    E +A GQ  +++GTHA+FQ+
Sbjct: 298 PTELLAEQHANTFRQWLEPLGLEVGWLAGKQKGKARLAQQEAVASGQVSMVVGTHAMFQE 357

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDID 444
            +++  L LVI+DEQHRFGV QRL L +K       PH L+MTATPIPRTL +T+  D+D
Sbjct: 358 QVKFSGLALVIIDEQHRFGVHQRLALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLD 417

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSV 503
            S I E P GR P+ TV IP  R  +VI+R+K   L EG++AYW+C  IEE +    ++ 
Sbjct: 418 TSVIDELPPGRTPVTTVAIPDTRRSDVIQRVKNACLEEGRQAYWVCTLIEESELLEAQAA 477

Query: 504 VERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
                 L       ++ ++HGRM   +K++VM +FK G  +LL+ATTVIEVG+DV +AS+
Sbjct: 478 EVTCEELKIALPEINVGLVHGRMKGPEKQAVMLAFKQGELQLLVATTVIEVGVDVPNASL 537

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           +II+N E  GLAQLHQLRGRVGRG   S C+LLY  PLSK +  RL VL+++ DGF+IA+
Sbjct: 538 MIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLYKTPLSKTAQMRLQVLRDSNDGFVIAQ 597

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
            DL+ R  GE+LG +Q+G  +F +A      +++   ++ A+H+  Q P+    R    R
Sbjct: 598 RDLEIRGPGELLGTRQTGSAEFKVADLLRDQAMIPEVQRVARHLHQQYPE--HARALIER 655

Query: 683 ILLYLYQYNEA 693
            L    +Y  A
Sbjct: 656 WLPERTRYTNA 666


>gi|332360531|gb|EGJ38341.1| DNA helicase RecG [Streptococcus sanguinis SK1056]
          Length = 671

 Score =  571 bits (1473), Expect = e-161,   Method: Composition-based stats.
 Identities = 239/688 (34%), Positives = 386/688 (56%), Gaps = 27/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D      + ++ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFAKL------GLETLQDLLLYFPFRYEDF-KSKNVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
             K K  +  +    +    +D     ++ VY L  G+S     K+I  A  +    +L 
Sbjct: 116 WDKAKASLTGMK---LLAQVEDD----LQPVYRLAQGISQASLVKLIKTAFDQGLDMLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S  EA   +H P+   D+     A  R+ ++EL   Q+ L +++++
Sbjct: 169 ENLPQPLLERYQLVSRVEAVRAMHFPKDLADY---KQALRRVKFEELFYFQMQLQVLKRE 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVGSG
Sbjct: 226 TKAVSNGLKIDWQLDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A RR
Sbjct: 286 KTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDNLAQLF--PELKLALLTGGMKAAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
             L  I +GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P VL+
Sbjct: 344 AILSAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ LK  L +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGAQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G   
Sbjct: 464 YFISPLIEESEALDLKNAIALEEELTAYFGQQAQVALLHGKMKSEEKEAIMQDFKEGRTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYN 691
             I T D +  +     + I L+L + +
Sbjct: 643 SQI-TADLNWRTDPSWHL-IALHLDKRD 668


>gi|258542200|ref|YP_003187633.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-01]
 gi|256633278|dbj|BAH99253.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-01]
 gi|256636337|dbj|BAI02306.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-03]
 gi|256639390|dbj|BAI05352.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-07]
 gi|256642446|dbj|BAI08401.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-22]
 gi|256645501|dbj|BAI11449.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-26]
 gi|256648554|dbj|BAI14495.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-32]
 gi|256651607|dbj|BAI17541.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654598|dbj|BAI20525.1| DNA helicase RecG [Acetobacter pasteurianus IFO 3283-12]
          Length = 715

 Score =  571 bits (1473), Expect = e-161,   Method: Composition-based stats.
 Identities = 266/708 (37%), Positives = 412/708 (58%), Gaps = 22/708 (3%)

Query: 4   SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
           S L PL APL +  GV    +  L +I     A   R +DLLF  P S  DR  RP +++
Sbjct: 19  SALAPLLAPLESLPGVSTARAKLLGRI-----AGGRRVMDLLFCLPESITDRRLRPTLAQ 73

Query: 64  ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           +  + I T+TG +    S   + R+P++++++D TG + + FF   +  L     +G  I
Sbjct: 74  LRPDTIATVTGVVQDIRSPAPRTRQPWRVMVDDATGVLEVAFF---SPWLAKQVVKGESI 130

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            ++GK+++  +++ +  P Y+   +Q    PL++ V+ L  GL     +  +  AL  LP
Sbjct: 131 ALSGKVERFGDKLTITSPDYLVPANQIERIPLLDPVWPLTAGLFTGQVRMAMAAALRLLP 190

Query: 184 V-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPA-------RERLAYDELLA 235
             LPEW +K L+++K++P  A A N +H P    D              + RLA DELLA
Sbjct: 191 PNLPEWHDKALIKQKNWPDFATALNWMHFPDTIPDSAQGDAWHGNRTRAQARLACDELLA 250

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q+A+ + ++  +   G  +N +G + ++ L +     T  Q+  +++I  DM+  + M 
Sbjct: 251 DQLAMRIAQQASRARPGRSLNGDGHLQKQALASFGHELTYGQKHVLREIEADMATPHCMS 310

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVG+GKTLVAL+AM  AVEAG QA +MAP  ILA+QH    ++    + + V  +
Sbjct: 311 RLLQGDVGAGKTLVALMAMLRAVEAGTQAALMAPTEILARQHAATFRRL---SPVPVAFL 367

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           + ++    R++ L+ IA G A +++GTHAL QD +++  L L ++DEQHRFGV QRL L 
Sbjct: 368 SSSVKGKARKQTLQDIADGTAKLVVGTHALVQDGVKFADLGLAVIDEQHRFGVDQRLALV 427

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K     +L+MTATPIPRTL+LT  G++ IS++  KPAGRKP++T +  +   ++V+  +
Sbjct: 428 EKGHDADMLVMTATPIPRTLLLTRFGEMQISRLEGKPAGRKPVRTSLHSLGNFEDVLAGI 487

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              L +G + +W+CP + E +  +  +   R  +L E F   I + HG+     +E V+ 
Sbjct: 488 GRALDKGAQIFWVCPLVSESEAMDLAAAEARHAALVERFGDKIGLTHGQQDANVREEVLQ 547

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +F  G  ++L+ATTVIEVG+DV  A+I++IE+AE FGLAQLHQLRGRVGRG + S C++L
Sbjct: 548 AFAKGETRMLVATTVIEVGVDVPSATIMVIEHAERFGLAQLHQLRGRVGRGADASFCLML 607

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           +   L   +  RLS LK TEDGFLIA+ED + R  GE  G +QSG+P + +A   L D L
Sbjct: 608 HDEGLGLTARRRLSCLKETEDGFLIADEDFRLRGGGEATGRRQSGLPDYRMAPEMLVDML 667

Query: 656 LEIARKDAKHILTQDPDLTSVRGQ---SIRILLYLYQYNEAFQFIRAG 700
           L+ A  +A  IL   P  ++       + RILL L+   +A +    G
Sbjct: 668 LDTAHDEATEILPDGPPTSTPEKNLPVAARILLTLFNKTDAARIFSGG 715


>gi|325299884|ref|YP_004259801.1| ATP-dependent DNA helicase RecG [Bacteroides salanitronis DSM
           18170]
 gi|324319437|gb|ADY37328.1| ATP-dependent DNA helicase RecG [Bacteroides salanitronis DSM
           18170]
          Length = 699

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 237/682 (34%), Positives = 379/682 (55%), Gaps = 22/682 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVT 71
           +   +GVG + +  L K +     N   F DLL+Y P  ++DR     I EI      + 
Sbjct: 9   IKYLQGVGPQRAAVLEKEL-----NIRSFKDLLYYFPYKYVDRSRLYYIHEIDGNMPYIQ 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I    +F   ++R      +DGTG + L++F +  + ++  +       V GK   
Sbjct: 64  LRGQILSFETFGEGRQRRLVGHFSDGTGVVDLVWF-QGLKFVEGKYKAHEPYIVFGKPTV 122

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEALSRL--PV 184
              RI + HP     +   ++   ++  Y+         L+    +K++    + L   V
Sbjct: 123 FNGRINIAHPDIDPADELVLSNMGLQPYYNTTEKMKRSNLNSHAVEKLMKNLFAALQREV 182

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E +   L+++     +++A + IH P+     +    A+ RL ++EL   Q+ +L   
Sbjct: 183 IEETLSPQLIEQHRLMPLSDALHNIHFPQNP---DLLRRAQYRLKFEELFYVQLNILRYT 239

Query: 245 KQFKKEIG-IPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            + + +   +     G+I        +PF  T +Q+  IK++ +DM    +M R+LQGDV
Sbjct: 240 LERRNKFRGLVFGTVGEIFHTFYEQNLPFQLTGAQKRVIKEMRRDMKSGRQMNRLLQGDV 299

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVAL+ M  A++ G QA +MAP  ILA QHYE I ++     + VE++TGN+   
Sbjct: 300 GSGKTLVALMTMLIALDNGYQACMMAPTEILANQHYETITRFLAGMPVRVELLTGNVKGK 359

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-P 421
            R   L  +  G+  I+IGTHA+ +D++ +  L LV++DEQHRFGV QR KL +K T  P
Sbjct: 360 KRETILRDLVTGEVQILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRAKLWKKNTCPP 419

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           HVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    NR   +   ++  L E
Sbjct: 420 HVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRRALLYAFIRKQLQE 479

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++AY + P I+E ++ + +++ + +  + E F    ++ +HG+M   +K++ M  F   
Sbjct: 480 GRQAYIVYPLIQESEKMDIKNLEDGYLHVCEAFPEYKVSKVHGKMKAAEKDAEMQRFVEN 539

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL+    L
Sbjct: 540 ETQILVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCILVTGYKL 599

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIA 659
           ++++  R+ ++ +T DGF IAE DLK R  G++ G +QSG+     IA       LL+  
Sbjct: 600 TEDTRKRIQIMVDTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQYV 659

Query: 660 RKDAKHILTQDPDLTSVRGQSI 681
           R+ A+H+L  DP  T      +
Sbjct: 660 REIAEHLLEADPQGTRPENAVV 681


>gi|253997768|ref|YP_003049831.1| ATP-dependent DNA helicase RecG [Methylovorus sp. SIP3-4]
 gi|253984447|gb|ACT49304.1| ATP-dependent DNA helicase RecG [Methylovorus sp. SIP3-4]
          Length = 683

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 256/688 (37%), Positives = 373/688 (54%), Gaps = 21/688 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL   +G+       LS +            DLL + P  ++D      I ++       
Sbjct: 3   PLQDLKGI---TQPVLSGLRKL---GIHSIEDLLLHLPLRYVDETRVTPIRDLRLGEQAQ 56

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I  H+  Q + R+     L D +G +TL F       +     EG ++   G+++ 
Sbjct: 57  VEGEII-HAEVQYKPRKALIARLQDASGILTLRFLNFYPSQIA-ALKEGNRLRALGEVRN 114

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
                 MVHP              +  VY    GLS    +K I  AL       E +  
Sbjct: 115 GFFGYEMVHPQCKPVREGAAVKQTLTPVYPTTAGLSQPSLRKWIGRALETASH-DELLPA 173

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQF 247
            + Q K++P   ++   +H P    D     E T+PA +RLA+DELLA QI++     + 
Sbjct: 174 KVYQGKAWPDFQQSLLQLHYPPPDADQHALQEKTTPAWQRLAFDELLAQQISMRKHYARR 233

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +      +    K+   +L+++PF  T +Q+    DI  D+ +   M R+LQGDVGSGKT
Sbjct: 234 RGLGAPAMPPSKKLVSALLKSLPFGLTAAQQRVFTDIQHDLGRSYPMQRLLQGDVGSGKT 293

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-----QIIVEIITGNMPQA 362
           +VA +A   A+E G QA IMAP  ILA+QH+  +  + QN       + V  + G+  + 
Sbjct: 294 IVAAMAALQAIEHGWQAAIMAPTEILAEQHFNKLNTWLQNLAAGAAPVRVVWVAGSQGKK 353

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R +AL  I+ G+A ++IGTHA+FQD +Q+ +L LV+VDEQHRFGVQQRL L QK   PH
Sbjct: 354 ARAEALAAISSGEAQLVIGTHAVFQDQVQFARLGLVVVDEQHRFGVQQRLALRQKGAQPH 413

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+M+ATPIPRTL ++   D+D+S I E P GR P+ T ++   R +EV ER++   S+G
Sbjct: 414 QLMMSATPIPRTLSMSYFADLDVSVIDELPPGRTPVVTKLVSDARREEVFERVRAACSQG 473

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++AYW+CP IEE +    ++ V+   +L E F    + ++HGRM   DK++VM +F    
Sbjct: 474 RQAYWVCPLIEESEALQLQTAVDTHIALQEAFPELQVGLVHGRMKPADKQAVMQAFAANQ 533

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             LL+ATTVIEVG+DV +AS+++IE+AE  GL+QLHQLRGRVGRG   S+CILLY  PLS
Sbjct: 534 IHLLVATTVIEVGVDVPNASLMVIEHAERMGLSQLHQLRGRVGRGAASSACILLYQTPLS 593

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + +  RL ++  + DGF IA+ DL  R  GE +GI+QSG P   IA  E    LLE A+ 
Sbjct: 594 ETARARLKIIYESSDGFEIAQADLHLRGPGEFMGIRQSGTPMLKIADLERDAGLLEEAQA 653

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQ 689
            A  +L + P   +      R L    +
Sbjct: 654 MADWLLQKHP--QAAEAHLQRWLHQAQE 679


>gi|206889688|ref|YP_002248538.1| ATP-dependent DNA helicase RecG [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741626|gb|ACI20683.1| ATP-dependent DNA helicase RecG [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 690

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 265/690 (38%), Positives = 385/690 (55%), Gaps = 26/690 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG K +  L KI            + L+Y PS + DR  +  I EI    
Sbjct: 6   LNLPIQYLKGVGPKKANLLKKI------GIETVKEALYYLPSQYEDRRNKKSIFEIKPGE 59

Query: 69  IVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           I+T  G + Q +  + +      + +++DGTG +   +F +    LK +  E +K+ + G
Sbjct: 60  IITAEGSVVQINEIRTKTNLSIIEAIISDGTGFLKAKWFNQN--YLKKILKEKKKLKLFG 117

Query: 128 KI--KKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLP 183
           K+      N + +++P Y       +     I  +Y L  GLS    + I+  A+   +P
Sbjct: 118 KVQIDYRGNYLEILNPEYELVEQTLNSQTQEIVPIYRLTEGLSQKQMQSIMQTAVEFAIP 177

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIA 239
            + E + ++L+ K   P++ EA   +H P    D     E TS   +R+ +DEL   Q+ 
Sbjct: 178 HIEEHLPENLINKLKLPTLKEAIKFVHLPPNNADIKLLNEKTSDFHKRIIFDELFFLQLG 237

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +LL+++    E GI  N EG + +K L N+PF  T +Q+  I +IL+DM +   M R+LQ
Sbjct: 238 ILLIKQNRICEKGISFNPEGDLLKKFLENLPFKLTSAQQKVINEILEDMKKPIPMNRLLQ 297

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA+ AM AA+E G QA +MAP  ILA+QHY  I    +   I   I T + 
Sbjct: 298 GDVGSGKTVVAVAAMLAAIECGYQAALMAPTEILAEQHYLNISSLLKGLPINTLIYTSS- 356

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
                 K    I  G  ++IIGTHAL Q+ I +  L +V++DEQHRFGV QR  L +K  
Sbjct: 357 ----YNKHSNLICSGAVNLIIGTHALIQEDIHFKNLGIVVIDEQHRFGVIQRAMLKKKGL 412

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P  L+MTATPIPRT+ LT  GD+D S + E PAGRKPI T +I       + + +   +
Sbjct: 413 NPDTLVMTATPIPRTMALTVYGDLDYSILDELPAGRKPILTKVIEPENKKIIYKMIAEEV 472

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
           S G + Y + P IEE +  + +S  + +  L + F    +A+IHG+MS   +E +M  F+
Sbjct: 473 SSGGQVYVVYPLIEESEAMDLKSATQGYEGLKKLFPQYKVALIHGKMSAKQREEIMKEFR 532

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           NG   +L+ATTVIEVG+DV +A+++II +AE FGLAQLHQLRGRVGRG   S CILL   
Sbjct: 533 NGDIHILVATTVIEVGVDVPNATLMIIIHAERFGLAQLHQLRGRVGRGLRPSKCILL-PY 591

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            L++ +  RL  + N  DGF IAEED+K R  GE+ G+KQSGMP   +A      SLLEI
Sbjct: 592 KLTEEAKLRLRAIVNYSDGFKIAEEDMKIRGPGELFGVKQSGMPDLKVADLIKDQSLLEI 651

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLY 688
           AR +A+ +L +D +L+       R  L  +
Sbjct: 652 ARNEAEQLLQEDKNLS--LHPKTRASLENF 679


>gi|82523708|emb|CAI78489.1| RecG-like helicase [uncultured beta proteobacterium]
          Length = 678

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 231/661 (34%), Positives = 356/661 (53%), Gaps = 15/661 (2%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           V    +  L+K+        TR  DL+ + P  + D      I ++   +   +   + +
Sbjct: 11  VSPATAAKLAKL------GLTRDADLVLHLPLRWEDETRITPIRDLLPGQTAQVQA-VVR 63

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
            +    + RR   + + D +G + L F       LK +F  G    + G+++     + M
Sbjct: 64  EAKVAYRPRRTLTVTVEDASGVLGLRFLNFYPSHLK-LFQPGEHFRINGEVRGGFLGLEM 122

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           VHP +   +        +  VY    GL     +K++  AL     + + +    L +  
Sbjct: 123 VHPRFSKADDSTPLPTQLTPVYPTTAGLGQATLRKLVTRALEA--PITDTLPAAWLTELG 180

Query: 199 FPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P +  +  ++H P       + E    PA +RLA+DELLA QI+L   R+Q + +   P
Sbjct: 181 LPELESSIRLLHQPPHDSALAELESHRHPAWQRLAFDELLAQQISLATSRRQRRSQRTTP 240

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  + ++     + +PF  T +Q  A ++I  D+ Q + M R+LQGDVGSGKT+VA +A 
Sbjct: 241 LPAKQQLTTVFTQTLPFELTSAQAHAWQEISADLEQPHPMRRLLQGDVGSGKTVVAALAC 300

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E G QA  MAP  ILA+QHY  +        +    ++G+  ++ R  A + IA G
Sbjct: 301 LQAIENGLQAAFMAPTEILAEQHYRKLASPLSALGVRCAWVSGSQKKSERTAAWQAIAAG 360

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           +  +  GTHALFQ++  + +L L +VDEQHRFGV QRL L QK   PH L+M+ATPIPRT
Sbjct: 361 EIDLAFGTHALFQEAGSFARLGLAVVDEQHRFGVGQRLALMQKGIEPHQLMMSATPIPRT 420

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I   P GR P+ T ++   R D+V+ R++     G +AYW+CP IEE
Sbjct: 421 LAMSFFADLDVSVIDALPPGRTPVVTKLVSAARRDDVVARIREACLAGGQAYWVCPLIEE 480

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            ++   ++  +   +L        I ++HGR+   +K++VM +F+     LL+ATTVIEV
Sbjct: 481 SEKLQLQTAQDTHAALAAQLPELRIGLVHGRLKSNEKQAVMAAFQAHEIDLLVATTVIEV 540

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LLY  P+S+ +  RL  +  
Sbjct: 541 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGSRESVCVLLYQTPVSELARARLKAIFE 600

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE+LG +QSG+P    A  E   +LLE AR  A+  L   PD+
Sbjct: 601 LTDGFEIARQDLLLRGPGELLGSRQSGLPMLRFADLERDVALLESARNLAQWCLNTHPDI 660

Query: 674 T 674
            
Sbjct: 661 A 661


>gi|71278605|ref|YP_271615.1| ATP-dependent DNA helicase RecG [Colwellia psychrerythraea 34H]
 gi|71144345|gb|AAZ24818.1| ATP-dependent DNA helicase RecG [Colwellia psychrerythraea 34H]
          Length = 697

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 270/697 (38%), Positives = 388/697 (55%), Gaps = 27/697 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST +GVG   +  L KI            D+LF+ P  + D+     + ++       
Sbjct: 13  PLSTLKGVGPSLAEKLEKI------GLLSVQDMLFHLPLRYEDKTRITTVRDLLVGTSTN 66

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I+  S     KRR   + L+DGTG I L FF       KN    G+ I   G++K+
Sbjct: 67  IIGEITD-SQITHGKRRMLVVTLHDGTGSIQLCFFSFSASQ-KNSLAIGKTIRCYGEVKR 124

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
                 +VHP Y   +      P+   +  VY    GL     + +  +AL RL    + 
Sbjct: 125 GPRGYQIVHPEYKSLDDDIELTPVEETLTPVYPSTDGLRQISLRSLTEQALIRLQRGQVE 184

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLL 242
           E +  +L  ++   S++EA  IIH P      E       PA++RL  +ELLA  +++L 
Sbjct: 185 ELLPANLFNEQ--YSLSEALTIIHRPPPEVSVEQLEQGRHPAQQRLIKEELLAHNLSMLK 242

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+       + +  + KI+QK L  +PFSPT +Q   +++I  D+++   M+R++QGDV
Sbjct: 243 LRQNSDIHDAVSLLGDEKISQKFLNALPFSPTNAQARVVEEIKTDLAKTQPMMRLVQGDV 302

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+  G Q  +MAP  ILA+QH      +     I V  + G     
Sbjct: 303 GSGKTLVAALAALTAISEGYQVALMAPTEILAEQHAINFANWFTPLDISVGWLAGKTKAK 362

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---- 418
            +R ALE IA G+  ++IGTHALFQ  + +  L+LVI+DEQH+FGV QRL L +K     
Sbjct: 363 AKRLALEHIASGEMQMVIGTHALFQADVVFKNLVLVIIDEQHKFGVHQRLTLREKGVFDD 422

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV- 477
             PH L+MTATPIPRTL +T+  D+D S I E P GR PI TV +P  R  +VIER++  
Sbjct: 423 KYPHQLIMTATPIPRTLSMTAYADLDTSIIDELPPGRTPINTVALPDLRRGDVIERIRQG 482

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            +++G++AYW+C  IEE +    ++  +    L E      I ++HGRM  I+K+ VMD+
Sbjct: 483 CVNDGRQAYWVCTLIEESEVLQCQAAEDTAILLQEQLPELKIGLVHGRMKAIEKQEVMDA 542

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+G   LLIATTVIEVG+DV ++S+++IEN E  GLAQLHQLRGRVGRG   S C+LLY
Sbjct: 543 FKSGDLHLLIATTVIEVGVDVPNSSLMVIENPERLGLAQLHQLRGRVGRGSVASFCVLLY 602

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLSK +  RL+VL+ + DGF+IAE+DL+ R  GE+LG +Q+G+    IA       L+
Sbjct: 603 KAPLSKTATKRLAVLRESNDGFVIAEKDLEIRGPGELLGTRQTGLADLKIADLLRDGYLI 662

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
              ++ A  +  Q P+      Q  R L    +Y+ A
Sbjct: 663 PEIKQKAYLLSRQQPECAQALIQ--RWLGNKERYSNA 697


>gi|224025353|ref|ZP_03643719.1| hypothetical protein BACCOPRO_02092 [Bacteroides coprophilus DSM
           18228]
 gi|224018589|gb|EEF76587.1| hypothetical protein BACCOPRO_02092 [Bacteroides coprophilus DSM
           18228]
          Length = 699

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 237/687 (34%), Positives = 374/687 (54%), Gaps = 23/687 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +   +GVG + +  LSK +     N   F DLL+Y P  ++DR     I EI
Sbjct: 1   MFDLSTRDIKYLQGVGPQRADILSKEL-----NIRSFKDLLYYFPYKYVDRSRLYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G +    +    ++R      +DGTG + L++F +  + +   +    + 
Sbjct: 56  DGNMPYIQLRGKVLSFETVGEGRQRRLVGHFSDGTGVVDLVWF-QGLKFVMGKYKANEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEA 178
            V GK      RI + HP         ++   ++  Y+         L+    +K++   
Sbjct: 115 IVFGKPTVFNGRINIAHPDIDPAAELTLSAMGLQPYYNTTERMKRTNLTSHALEKLMKNL 174

Query: 179 LSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            + L    L E +   L++     S+ +A   IH PR     +    A+ RL ++EL   
Sbjct: 175 FTALQHECLDETLSPSLIEAHHLMSLTDALYNIHFPRNP---DLLRKAQYRLKFEELFYI 231

Query: 237 QIALLLM-RKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRM 294
           Q+ +L   +++  K  G+     G+I      +N+PF  T +Q+  I+++ +DM    +M
Sbjct: 232 QLNILRYTKERRNKFRGLVFGRVGEIFNTFYAQNLPFQLTGAQKRVIREMRRDMGSGRQM 291

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVGSGKTLVAL+ M  A++ G QA +MAP  ILA QHYE I ++ +   + VE+
Sbjct: 292 NRLLQGDVGSGKTLVALMTMLIALDNGFQACMMAPTEILAVQHYETINRFLEGMNVRVEL 351

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG +    R   L  +  G   I+IGTHA+ +D++ +  L LV++DEQHRFGV QR KL
Sbjct: 352 LTGTVKGKKREAILSGLLTGDVQILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRAKL 411

Query: 415 TQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             K T  PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+TV    NR   +  
Sbjct: 412 WAKNTCPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTVHQFDNRRPSMYA 471

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
            L+  + EG++ Y + P I+E ++ + +++ + +  + E F    ++ +HG+M   +KE 
Sbjct: 472 FLRKQIQEGRQVYIVYPLIQESEKMDIKNLEDGYLHICEEFPEYKVSKVHGKMKPAEKEE 531

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M  F     ++++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S C
Sbjct: 532 EMQRFLRNETQIMVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYC 591

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPEL 651
           +L+    L++ +  R+ ++  T DGF IAE DLK R  G++ G +QSG+     IA    
Sbjct: 592 VLVTGYKLTEETRKRIEIMVQTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIAR 651

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRG 678
              LL+  R+ A+ +L +DP+      
Sbjct: 652 DGQLLQYVREIAERLLEEDPEGVRPEN 678


>gi|51892522|ref|YP_075213.1| ATP-dependent DNA helicase RecG [Symbiobacterium thermophilum IAM
           14863]
 gi|51856211|dbj|BAD40369.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 709

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 235/701 (33%), Positives = 387/701 (55%), Gaps = 23/701 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           +PL  P+   +G+G   +  L+K             DL+   P ++ D      I++   
Sbjct: 19  DPLSMPVQYLKGIGPARARDLAK------QGIATVRDLIERVPRAYRDYSQIKPIAQAQN 72

Query: 67  ERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
            +  ++ G +      +++      +++++DG+G    ++F +        F  G K+  
Sbjct: 73  GQPESLMGTVVMVDDRRVRGNLHLTRVIISDGSGTAAGVWFNQ--PWQAKRFPVGMKVLF 130

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVEALS- 180
            G +++   +I + +P +   + +  + PL    I  VY L  GL+    ++ +  AL  
Sbjct: 131 AGTVERRGAQIQITNPEWEIIDEESSSDPLHAGRIVPVYPLTGGLNPRDVRRAVYLALQT 190

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
              ++P+ I   + +++     AEA+  IH P      E     R  LA++EL   Q+ L
Sbjct: 191 AADLMPDTIPGPVRERQGLMPAAEAWRAIHFPDSGGQRERA---RATLAFEELFVLQVGL 247

Query: 241 LLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            L+R+Q   ++ GI    +G++ +++   +PF  T +QE  I+ +  DM     M R++Q
Sbjct: 248 ALVRRQTVVEQAGIAHGPDGEVTRRLRAGLPFRLTAAQERVIRQVAADMESSRPMNRLVQ 307

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA+ A+A AV++G Q  +MAP  ILA+QHY  +++      + V +++G++
Sbjct: 308 GDVGSGKTMVAVFALAKAVDSGHQGALMAPTEILAEQHYLNLRRIFAPLGVEVVLVSGSL 367

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            +  R   L  +  G AHI +GTHAL +D + +  L LVI DEQHRFGV+QR +L QK  
Sbjct: 368 TKKERDANLGLLQMGAAHIAVGTHALIEDRVAFKDLSLVITDEQHRFGVRQRARLQQKGE 427

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKV 477
             P  L+MTATPIPRTL LT  GD+D+S I E P GR+P+ T   P +   +V +  ++ 
Sbjct: 428 VMPDTLVMTATPIPRTLALTLYGDLDVSVIDELPPGRRPVGTYWRPESARRQVYDHLMRT 487

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            +  G++ Y +CP IEE  +   ++  E +  L   +    + ++HGR+   +KE+VM++
Sbjct: 488 EVPAGRQGYVVCPLIEESDKLQAQAATEWYERLKAQYPDVRLGLLHGRLRPAEKEAVMEA 547

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G  ++L+ TTVIEVG+DV +A+++IIE A+ FGLAQLHQLRGRVGRG   S C+L+ 
Sbjct: 548 FRAGEIQVLVTTTVIEVGVDVPNATMMIIEGADRFGLAQLHQLRGRVGRGSHQSYCVLIA 607

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            P  +  +  RL +++   DGF +AE+DL+ R  GE  G +Q GMP   +A P    ++L
Sbjct: 608 DPK-TAEARERLMIMQKYSDGFALAEKDLELRGPGEFFGTRQHGMPDLKVANPIADLAIL 666

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
           E AR +A  ++ +DP L     Q++R  +   +  E F FI
Sbjct: 667 ERARAEAMRLVEEDPHLRLPEHQALRQAVK-ERLGEQFGFI 706


>gi|295399774|ref|ZP_06809755.1| ATP-dependent DNA helicase RecG [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978177|gb|EFG53774.1| ATP-dependent DNA helicase RecG [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 689

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 235/686 (34%), Positives = 382/686 (55%), Gaps = 23/686 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  P++  +G+G++ S  L ++        T   +LL + P  + D      ++E+  
Sbjct: 10  RELQQPVTAIKGIGEETSEALREM------GITTIEELLMHVPYRYEDY-EVKDLAEVKH 62

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKIT 124
           +  VT+ G +    S     ++  ++      G   IT++ F R    LK        +T
Sbjct: 63  DEKVTVEGKVYSEPSLTYYAKKKSRLAFRLLVGRYLITVVCFNR--PYLKQKLSINDTVT 120

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-P 183
           V+GK  + +  I                   +E VYS+   ++V   ++ I  AL++   
Sbjct: 121 VSGKWDRHRQTITAN----ELKMGALPQKRELEPVYSVRGSVTVKGMRRFIQLALTQYGE 176

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + +   + Q     S  EA   IH PR  ++      AR RL Y+E L  Q+ +  +
Sbjct: 177 AIIDPLPLSMRQTYRLISKQEAIRAIHFPRSHEEL---KQARRRLVYEEFLLFQLKIHAL 233

Query: 244 RK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           RK Q +   GI  +   +     +  +PF  TK+Q+  +++IL DM    RM R+LQGDV
Sbjct: 234 RKVQREHSQGIAHSFSPEKLHDFIDRLPFPLTKAQQRVVREILTDMQSPYRMNRLLQGDV 293

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA I + AAV +G Q  +M P  ILA+QH + ++     T + V ++T ++   
Sbjct: 294 GSGKTVVAAIVLYAAVLSGYQGALMVPTEILAEQHAQSLQTLFAPTDVTVALLTSSVKGK 353

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R++ LE++A G   I++GTHAL Q+ + + KL LVI DEQHRFGV+QR  L +K  AP 
Sbjct: 354 RRKEILEQLACGTIDIVVGTHALIQEEVNFQKLGLVITDEQHRFGVEQRRILREKGQAPD 413

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T+ G++D+S I E PAGRK ++T  +  +  + V++ ++  + +G
Sbjct: 414 VLMMTATPIPRTLAITAFGEMDVSVIDEMPAGRKKVQTYWVKHHMFERVLDFMEKEIQKG 473

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540
           ++AY ICP IEE ++ + ++ ++  + L  ++     I ++HGR+S  +KE VM +F   
Sbjct: 474 RQAYVICPLIEESEKLDVQNAIDVHSMLTHYYRGKYNIGLMHGRLSSEEKEEVMKAFSEN 533

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+E S CIL+  P  
Sbjct: 534 RIQVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDEQSYCILIADPK- 592

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSGMP+F          +LE+AR
Sbjct: 593 SETGKERMRIMTETTDGFVLSEKDLQLRGPGDFFGTKQSGMPEFKFGDVVHDYRILEVAR 652

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLY 686
            DA  ++           Q +R+ L+
Sbjct: 653 NDAAKLVQSAAFWRDEPYQWLRLYLH 678


>gi|281492921|ref|YP_003354901.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis
           KF147]
 gi|281376573|gb|ADA66059.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis
           KF147]
          Length = 666

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 242/675 (35%), Positives = 372/675 (55%), Gaps = 32/675 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG K      K+            DLL Y P  + D   R  + E+ +  
Sbjct: 3   LTDSVQFLKGVGPKSVENFHKL------GIFTVQDLLLYFPFRYEDFASR-SVFELVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             TI G +   ++ Q    KR      + +G   + + FF +    L +    G++I V 
Sbjct: 56  KATIIGTVVTPANVQYYGFKRNRLSFKIKEGEAVVAVSFFNQ--PYLADKVEVGKEIAVY 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPV 184
           GK ++ K +++ +    +     D     +E VY L  G+      K+I +      L  
Sbjct: 114 GKWEQAKQQLMGMK---VVAQVDDG----LEPVYHLTAGMKQSQLVKVIHQVFESDLLSE 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE + + L++K    +  EA   +H P   +D E    A  R+ ++EL   Q+ L  ++
Sbjct: 167 LPENLPEFLIKKYRLMNRQEAVLAMHFP---EDTEAHKQALRRVKFEELFMFQLKLQALK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K    G+ +  E     + +  +PF  T +Q SA+ +IL DM     M R+LQGDVG
Sbjct: 224 NKEKSGRAGLEVVFEQGEIDQKISELPFELTGAQLSALSEILTDMKSPYHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM AA  A  QA IM P  ILA+QH+  +K      QI   ++   +  A 
Sbjct: 284 SGKTVVASLAMYAACLANFQAAIMVPTEILARQHFANLKALFPELQI--SLLVSGLKVAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  +  G  H+++GTHAL Q+ + +Y L LVI DEQHRFGV QR  L +K   P V
Sbjct: 342 RREILADLVSGHTHMVVGTHALIQEGVDFYNLGLVITDEQHRFGVNQRKILREKGQNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I E P GR+PI T  +   +  EV+  +K  +++  
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDELPKGRQPITTRWVKHEQFSEVLSWIKAEVAKDS 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++    F  L+E+F   + I ++HG+M + +K+ +M  FK   
Sbjct: 462 QVYFISPLIEESETLDLKNAEALFAELNEYFGLFAKIGLLHGKMKNDEKDQIMQEFKAKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG+DV +A+I++I +A+ FGL+QLHQLRGRVGRG + S  IL+ +P  S
Sbjct: 522 LDILVSTTVIEVGVDVPNATIMVIMDADRFGLSQLHQLRGRVGRGTKKSYAILVANPK-S 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R+ ++  T++GF++AEEDLK R  GEI G++QSG+P+F+ A      ++LE+ARK
Sbjct: 581 DSGKQRMKIMTETQNGFILAEEDLKMRGSGEIFGLRQSGLPEFIAADLVNDYNILEVARK 640

Query: 662 DAKHIL---TQDPDL 673
           +A  I     + PDL
Sbjct: 641 EAVEIFKNADEFPDL 655


>gi|167464130|ref|ZP_02329219.1| ATP-dependent DNA helicase RecG [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384318|ref|ZP_08058016.1| ATP-dependent DNA helicase RecG-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150820|gb|EFX44257.1| ATP-dependent DNA helicase RecG-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 681

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 231/682 (33%), Positives = 375/682 (54%), Gaps = 20/682 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++   GVG + +  L+ +             L+ Y P  + D   R  +SE+ +   +T
Sbjct: 8   PVTRVSGVGPQKAEDLAAL------GIHTAAQLIAYFPFRYEDYRLR-DLSEVKDGERIT 60

Query: 72  ITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           + G +      Q   R+      +      +T ++F R    LK+    G++I +TGK  
Sbjct: 61  VQGNLIGAPVLQRYGRKSRLSCKVVIDHFFVTAVWFNR--PFLKDKLASGKEIRLTGKWD 118

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189
             + ++ +    +      D     ++ VYSL   L+    +K+I +AL +   ++ E +
Sbjct: 119 ARRKQLTVSESEF---PGNDSLTGTLQPVYSLTGSLTQKSIRKMIQQALKQFGNLIQEVL 175

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248
             D +++       +A  +IH P   +D      AR R+ Y+EL   Q+ +   +    K
Sbjct: 176 PADFVKRYQLLPRKQAVALIHQPSGLED---GKQARRRMVYEELFFFQLKMHAFKAITRK 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +  G+   V+    +  ++++PF  T SQ+  + +IL DM Q   M R+L+GDVG+GKT+
Sbjct: 233 RADGLAQQVDLPKIRSFVKSLPFELTPSQKQVVGEILHDMQQPYTMNRLLKGDVGAGKTV 292

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA  A+ A V AG Q  +M P  ILA+QH + + +  +   I   ++TG+     RR+ L
Sbjct: 293 VAATALYATVTAGCQGALMVPTEILAEQHKKSLSRMFKPYGIETALLTGSSTDKKRREIL 352

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             +  G   ++IGTHAL Q+ + + KL LV+ DEQHRFGV QR  L +K   P VL MTA
Sbjct: 353 AGVQMGLIQVLIGTHALIQEDVFFRKLGLVVTDEQHRFGVSQRSILRRKGMNPDVLSMTA 412

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ GD+D+S + E P GRKPIKT  +  + ++ V+  ++   + G++AY I
Sbjct: 413 TPIPRTLAITAFGDLDVSTLREMPKGRKPIKTYWVHHDMLERVLGFIQKEAAGGRQAYVI 472

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           CP IEE  + + ++ ++    L +HF   +I ++HGRM+  +K+  M SFK+G+ ++L++
Sbjct: 473 CPLIEESDKLDVQNAIDVHVQLQQHFPDLNIGLLHGRMTAAEKDDTMRSFKDGSIQVLVS 532

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG+DV +A+++++ +A+ FGL+QLHQLRGRVGRGE  S C+L+  P  ++    R
Sbjct: 533 TTVIEVGVDVPNATLMVVYDADRFGLSQLHQLRGRVGRGEHQSFCVLIADPK-TEVGKER 591

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +  +  T DGF IA  DL+ R  G+  G KQSG+P+F IA       ++EIAR DA  ++
Sbjct: 592 MQAMTETTDGFEIARRDLELRGPGDFFGTKQSGLPEFRIADLMCDFEIMEIARDDAADLV 651

Query: 668 TQDPDLTSVRGQSIRILLYLYQ 689
            +    T+     +R  L   Q
Sbjct: 652 AKPEFWTAAEYVPLRQFLQKEQ 673


>gi|295706317|ref|YP_003599392.1| ATP-dependent DNA helicase RecG [Bacillus megaterium DSM 319]
 gi|294803976|gb|ADF41042.1| ATP-dependent DNA helicase RecG [Bacillus megaterium DSM 319]
          Length = 682

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 237/687 (34%), Positives = 374/687 (54%), Gaps = 24/687 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +N L    + T +G+G++ +  L       + +     DLL + P  + D      ++E 
Sbjct: 1   MNELTTISIKTIKGIGEETAQALE------DMHIHSVHDLLEHFPYRYEDY-ELKDLAEA 53

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRK 122
             +  VT+ G +    S     ++  ++          IT+  F R     K+     + 
Sbjct: 54  KHDEKVTVEGKVHSVPSLTYYGKKRSRLTFRLLVNRYLITVTCFNR--PYYKSKLEIDQT 111

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           +TVTGK  + +  I +         S  V    IE VYS+   L+V   +K +  AL   
Sbjct: 112 VTVTGKWDQHRQTINLQ----ELQFSPFVKNQTIEPVYSVKGSLTVKGMRKFVSLALKNY 167

Query: 183 -PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              + + +   +  +    +  EA   IH PR  +D      AR R  Y+E L  Q+ + 
Sbjct: 168 GSSIQDMLPASIRSRYKLVTREEAVRSIHLPRDHEDL---KQARRRFVYEEFLLFQLKMQ 224

Query: 242 LMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            +RK+  ++  G+    +          +PF  T +Q+  + +I  DM    RM R+LQG
Sbjct: 225 ALRKREREETPGMKQAFDSTELVNFTNLLPFPLTNAQKRVVNEITHDMKSPYRMNRLLQG 284

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A+ A V AG Q  +M P  ILA+QH E +    +   I V ++TG++ 
Sbjct: 285 DVGSGKTVVAAVALYATVLAGHQGALMVPTEILAEQHAESLTAMLEKVGISVGLLTGSVK 344

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+ L+R+  G  H+++GTHAL QD + Y  L LVI DEQHRFGV QR  L +K  +
Sbjct: 345 GKARRELLQRVKDGDVHVLVGTHALIQDEVIYSSLGLVITDEQHRFGVGQRRVLREKGES 404

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL MTATPIPRTL +T  G++D+S I E PAGRK I+T  +  + ++ ++  ++  + 
Sbjct: 405 PDVLFMTATPIPRTLAITVFGEMDVSIIDEMPAGRKAIETYWVKHDMLERILHFVEKEIH 464

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFK 538
           +G++AY ICP IEE  + + ++ ++   +L  +F   +S+ ++HGR+S  +KE VM  F 
Sbjct: 465 DGRQAYVICPLIEESDKLDVQNAIDVHATLAHYFNGKASVGLMHGRLSADEKEEVMKQFS 524

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG+  S CILL  P
Sbjct: 525 VNDVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGDAQSYCILLADP 584

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             S+    R++++  T DGF+++E DL+ R  G+  G KQSGMP+F +A        LE+
Sbjct: 585 K-SEVGKERMTIMTETNDGFVLSERDLELRGPGDFFGRKQSGMPEFKVADMVHDYRALEV 643

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILL 685
           AR+DA  ++  D   T  +   +RI L
Sbjct: 644 AREDAAKLVNSDSFWTEDQFALLRIQL 670


>gi|312111714|ref|YP_003990030.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y4.1MC1]
 gi|311216815|gb|ADP75419.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y4.1MC1]
          Length = 705

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 235/686 (34%), Positives = 382/686 (55%), Gaps = 23/686 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  P++  +G+G++ S  L ++        T   +LL + P  + D      ++E+  
Sbjct: 26  RELQQPVTAIKGIGEETSEALREM------GITTIEELLMHVPYRYEDY-EVKDLAEVKH 78

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKIT 124
           +  VT+ G +    S     ++  ++      G   IT++ F R    LK        +T
Sbjct: 79  DEKVTVEGKVYSEPSLTYYAKKKSRLAFRLLVGRYLITVVCFNR--PYLKQKLSINDTVT 136

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-P 183
           V+GK  + +  I                   +E VYS+   ++V   ++ I  AL++   
Sbjct: 137 VSGKWDRHRQTITAN----ELKMGALPQKRELEPVYSVRGSVTVKGMRRFIQLALTQYGE 192

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + +   + Q     S  EA   IH PR  ++      AR RL Y+E L  Q+ +  +
Sbjct: 193 AIIDPLPLSMRQTYRLISKQEAIRAIHFPRSHEEL---KQARRRLVYEEFLLFQLKIHAL 249

Query: 244 RK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           RK Q +   GI  +   +     +  +PF  TK+Q+  +++IL DM    RM R+LQGDV
Sbjct: 250 RKVQREHSQGIAHSFSPEKLHDFIDRLPFPLTKAQQRVVREILTDMQSPYRMNRLLQGDV 309

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA I + AAV +G Q  +M P  ILA+QH + ++     T + V ++T ++   
Sbjct: 310 GSGKTVVAAIVLYAAVLSGYQGALMVPTEILAEQHAQSLQTLFAPTDVTVALLTSSVKGK 369

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R++ LE++A G   I++GTHAL Q+ + + KL LVI DEQHRFGV+QR  L +K  AP 
Sbjct: 370 RRKEILEQLACGTIDIVVGTHALIQEEVNFQKLGLVITDEQHRFGVEQRRILREKGQAPD 429

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T+ G++D+S I E PAGRK ++T  +  +  + V++ ++  + +G
Sbjct: 430 VLMMTATPIPRTLAITAFGEMDVSVIDEMPAGRKKVQTYWVKHHMFERVLDFMEKEIQKG 489

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540
           ++AY ICP IEE ++ + ++ ++  + L  ++     I ++HGR+S  +KE VM +F   
Sbjct: 490 RQAYVICPLIEESEKLDVQNAIDVHSMLTHYYRGKYNIGLMHGRLSSEEKEEVMKAFSEN 549

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+E S CIL+  P  
Sbjct: 550 RIQVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDEQSYCILIADPK- 608

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSGMP+F          +LE+AR
Sbjct: 609 SETGKERMRIMTETTDGFVLSEKDLQLRGPGDFFGTKQSGMPEFKFGDVVHDYRILEVAR 668

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLY 686
            DA  ++           Q +R+ L+
Sbjct: 669 NDAAKLVQSAAFWRDEPYQWLRLYLH 694


>gi|220931855|ref|YP_002508763.1| ATP-dependent DNA helicase RecG [Halothermothrix orenii H 168]
 gi|219993165|gb|ACL69768.1| ATP-dependent DNA helicase RecG [Halothermothrix orenii H 168]
          Length = 683

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 238/682 (34%), Positives = 374/682 (54%), Gaps = 21/682 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           + +   RGVG +Y+  L K+      N     DLL+Y P ++ DR     I  I     V
Sbjct: 7   SSVQFVRGVGPRYAEVLKKL------NINTVKDLLYYFPRTYQDRSQFTPIKYIRPGYEV 60

Query: 71  TITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           T+ G I +    +++K     K  + DG+  +  ++F +    +K    +G+    +GK+
Sbjct: 61  TVQGEIIKIEENKIRKGLSILKATITDGSDVLNGVWFNQN--YIKKQLKKGQTYIFSGKL 118

Query: 130 K---KLKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPV 184
                   +  + +P +   +  D ++   I  +Y L +G++    + II  AL      
Sbjct: 119 NEKSFRFRKKEISNPVFEKVDKGDSIHTGRIVPIYPLTSGVTQKRLRTIIYNALNDYAHH 178

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L +++   + +K  FP I+ +   +H P   + + ++   R RLA++EL   Q+ +L  +
Sbjct: 179 LTDYLPGFIRKKYKFPDISRSIWGLHFPENREHYIYS---RRRLAFEELFFLQLLVLKRK 235

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           K   +  GI    EG++ +K L+ +PF  T +Q+   ++I  DM +   M R+LQGDVGS
Sbjct: 236 KGIIESRGINHKDEGEVIKKFLKLLPFRLTAAQKRVWREIKADMEKPTPMQRLLQGDVGS 295

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++A +A+   +  G Q V MAP  ILA+QHY  +K   +       ++ G +  + R
Sbjct: 296 GKTIIAALALIETMANGYQGVFMAPTEILAEQHYLKLKDLLEPLGYRTALLVGGITGSQR 355

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
                 I   +  +I+GTH LFQ+ I Y+ L LV++DEQHRFGV+QR KL +K   P VL
Sbjct: 356 ENIERGIEEKKIDLIVGTHTLFQERINYFSLGLVVIDEQHRFGVEQRFKLEKKGDNPDVL 415

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRT+ LT  GD+D+S I E P GR P+ T     N    +   +K  L EG++
Sbjct: 416 VMTATPIPRTMALTIYGDLDLSIIDELPPGRSPVITTWRTQNSRKRIYSFVKEKLEEGRQ 475

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           AY +CP IE  +E    S +E    L + +    ++ ++HG++   +K+ VM+ F+ G  
Sbjct: 476 AYVVCPVIEPSEELEVVSALEIKEKLEDKYLKGYNVGLLHGKLPPEEKKQVMEDFRQGVI 535

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L++TTV+EVG+DV +A+I+IIENA+ FGLAQLHQLRGRVGRG+  S CIL+ +P  ++
Sbjct: 536 DVLVSTTVVEVGVDVPNATIMIIENADRFGLAQLHQLRGRVGRGKYQSYCILIGNPT-TE 594

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               RL V+ +  DGF IA+EDLK R  GE  G +Q G+P   +A       LL++AR++
Sbjct: 595 EGKRRLKVMTSLNDGFEIADEDLKIRGPGEFFGTRQHGIPDLKVASLIKDKKLLQLARQE 654

Query: 663 AKHILTQDPDL-TSVRGQSIRI 683
           A +I+    D     R    RI
Sbjct: 655 AFNIIYSTRDWQDKYRNLKERI 676


>gi|229541126|ref|ZP_04430186.1| ATP-dependent DNA helicase RecG [Bacillus coagulans 36D1]
 gi|229325546|gb|EEN91221.1| ATP-dependent DNA helicase RecG [Bacillus coagulans 36D1]
          Length = 682

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 234/684 (34%), Positives = 372/684 (54%), Gaps = 23/684 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL  P+S  +G+G++    L      G        DLL Y P  + D      + E+  +
Sbjct: 4   PLDQPVSVLKGIGEETEASL------GQMGIFTIYDLLTYFPFRYEDDR-LKDLREVRHD 56

Query: 68  RIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
             VT+TG +    S     +KR    + +  G   IT++ F +    LK        ITV
Sbjct: 57  ERVTVTGRVHSEPSLIYYSKKRSRLSMKVFAGDFLITVVCFNQ--PYLKKKIHVHDVITV 114

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPV 184
           TGK    +  I                      VY++   ++V   +K I  A  +    
Sbjct: 115 TGKWDMHRQTITAQS----VKTGTADQTSGFGPVYAVKGKMTVKTLRKYIQSAFHAYGSE 170

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E +  ++L K       +A   +H P+  ++      AR  + Y+E LA Q+ +  +R
Sbjct: 171 IEEALPAEMLAKYKLMPKKQAMYAMHFPKSEQEV---KMARRTIVYEEFLAFQLKMQALR 227

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K + +   G  I  + +  +  + ++PFS T +Q+  + +I  D+    RM R+LQGDVG
Sbjct: 228 KFEREHSNGRAIRYDVRKLRHFIGSLPFSLTAAQKRVVNEICADLKSPFRMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA IA+ AAV AG Q  +M P  ILA+QH E + +  +   + V ++T  +    
Sbjct: 288 SGKTVVAAIALYAAVTAGFQGALMVPTEILAEQHAESLCQLLEPHGVQVALLTSTVKGKR 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           R+  LE++  G   I+IGTHAL Q+ + + +L LVI DEQHRFGV+QR  L +K   P V
Sbjct: 348 RKALLEQLGTGGIDILIGTHALIQEDVAFSRLGLVITDEQHRFGVEQRRILREKGMNPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T  G++D+S I + PAGRK I+T  +  N  + V+  ++  L +G+
Sbjct: 408 LFMTATPIPRTLAITVFGEMDVSVIDQMPAGRKKIETYWVKNNLFERVLGFIEKELKKGR 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE  + + ++ ++ +  L+++F       ++HGR+   +KE+VM +F    
Sbjct: 468 QAYVICPLIEESDKLDVQNAIDVYAILNQYFNGRYTAGLMHGRLPGDEKEAVMKAFSRNE 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTV+EVG++V +A+I++I +AE FGLAQLHQLRGRVGRG+  S CILL  P  +
Sbjct: 528 IQVLVSTTVVEVGVNVPNATIMVIYDAERFGLAQLHQLRGRVGRGDAQSYCILLADPK-T 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T++GF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+
Sbjct: 587 EIGKERMKIMTETDNGFVLSEKDLELRGPGDFFGKKQSGLPEFKVADMVHDFRALETARQ 646

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
           DA+ +++ D          +R  L
Sbjct: 647 DAQQLISSDTFWHDPAFSHLRRQL 670


>gi|262282056|ref|ZP_06059825.1| ATP-dependent DNA helicase RecG [Streptococcus sp. 2_1_36FAA]
 gi|262262510|gb|EEY81207.1| ATP-dependent DNA helicase RecG [Streptococcus sp. 2_1_36FAA]
          Length = 671

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 242/675 (35%), Positives = 382/675 (56%), Gaps = 30/675 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PLS   GVG K +   +K+            DLL Y P  + D     ++ ++ +  
Sbjct: 3   LHQPLSVLPGVGPKSAEKFAKL------GIETLQDLLLYFPFRYEDF-QSKQVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              I G ++  ++ Q    +  ++  +   GE+ L   +     L +    G  I V GK
Sbjct: 56  KAVIFGIVATPANVQYYGFKRNRLRFSIKQGEVILAVNFFNQPYLADKVEVGANIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             K K  +  +    +    +D     ++ VY +  G+S     K+I  A  + L +L  
Sbjct: 116 WDKAKASLTGMK---LLAQVKDD----LQPVYRVAQGISQTSLIKLIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S AEA   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQVLLERYQLLSRAEAVRAMHFP---KDLAEYKQALRRVKFEELFYFQMQLQVLKME 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + ++ + +  Q+    +PF  T +QE A+ +IL D+     M R+LQGDVGSG
Sbjct: 226 TKDVSNGLVLDWQEEQLQEKKSQLPFPLTGAQERALAEILSDLKSPAHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH+E +        + + ++TG+M  A R+
Sbjct: 286 KTVVAGLAMYAVHTAGYQSALMVPTEILAEQHFESLSHLF--PDLKLALLTGSMKAAERK 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I  GQ  ++IGTHAL QD +QY+ L LVIVDEQHRFGV QR  L +K   P VL+
Sbjct: 344 ETLLAIELGQVDMVIGTHALIQDGVQYHHLGLVIVDEQHRFGVAQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ +K  L +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWIKKELVKGAQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ ++    L  +F   + ++++HG+M   +KE++M +FKN    
Sbjct: 464 YFISPLIEESEALDLKNAIDLEEELQAYFGVDARVSLLHGKMKSDEKEAIMQAFKNKEVD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG++ S  IL+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATIMVIMDADRFGLSQLHQLRGRVGRGDKQSYAILVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILT-----QDPDL 673
             I+      +DP+ 
Sbjct: 643 SQIVQNKDWRRDPNW 657


>gi|313887889|ref|ZP_07821568.1| ATP-dependent DNA helicase RecG [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846055|gb|EFR33437.1| ATP-dependent DNA helicase RecG [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 676

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 236/674 (35%), Positives = 379/674 (56%), Gaps = 19/674 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +G+G K +    K+            DLL ++P  + D     ++SE     
Sbjct: 3   LSDPIKNLKGIGPKRAELFHKL------GIYTIEDLLHFYPRRYEDSSKVTRVSEAKIGE 56

Query: 69  IVTITGYISQH-SSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             T    I     + +++K       L  D +GE+ L FF      L N    GR   V 
Sbjct: 57  KNTFRVRILSKLQNRRIRKGLTLTSFLAEDESGEVELSFFNAF--YLHNKILPGRCYLVY 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK    + R+ M  P     ++       I  +Y+L  GL+  +F+K++ + +    +  
Sbjct: 115 GKADYFRGRVTMSSPEIEEVDNLK-KLGKISPIYNLTEGLNNFVFEKVVEQVIGE-NLFR 172

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + K++L+K SF    +A   IH P+  K++     ARERL Y+EL   ++++L  + Q
Sbjct: 173 ENLPKEILEKYSFLGKNDAIRAIHYPKSRKNY---IQARERLIYEELFLFELSILKNKVQ 229

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            ++   I   ++ ++    +  +PF  T+ Q++ IK+I  DM +   + R++QGDVGSGK
Sbjct: 230 NERRDAIKFEIKDQVFD-FINKLPFKLTEGQDTVIKEIFSDMKEGKAINRLIQGDVGSGK 288

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T++A+I M  A   G Q+ IMAP  ILA+QH+E   +  +   I V ++ G+  +  +R 
Sbjct: 289 TIIAIIIMYLAYLNGYQSSIMAPTEILAKQHFESFVELLEPLGIKVGLLIGSTSKKAKRD 348

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            L+ +  G   I+IGTHAL ++++ + KL + ++DEQHRFGV QR  L  K      L+M
Sbjct: 349 ILDNLEMGSIDILIGTHALIEENVVFKKLGVNVIDEQHRFGVVQRNMLQNKNKDAATLVM 408

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPR+L L    D+D+S I   P GRKPIKT+ I  N +++ +  +K  L+EG++AY
Sbjct: 409 SATPIPRSLSLVLYADLDVSIIKSMPKGRKPIKTIAINENMLEKSLAFIKKELAEGRQAY 468

Query: 487 WICPQIEEKKESNFRSVVER-FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            IC  IEE ++      VE+ +  L ++F   ++ ++HG+M   +K  VM+ F      L
Sbjct: 469 VICSLIEENQDYENLQAVEKVYEELSQYFSDFNLGLLHGKMKAEEKNQVMNDFAENKINL 528

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVG++V +AS+I+I NAE FGL+ LHQLRGRVGRG++ S CIL Y+   S+ S
Sbjct: 529 LVSTTVVEVGVNVPNASVIMIYNAERFGLSTLHQLRGRVGRGDQQSYCIL-YNLSKSEIS 587

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           + R+ ++ ++ DGF IA +DL+ R  G+ILG +QSGMP   +A P   +++L+ A +D K
Sbjct: 588 WERMKIMTDSNDGFYIANKDLELRGFGDILGTRQSGMPNLRLADPFRDETILKYAAEDVK 647

Query: 665 HILTQDPDLTSVRG 678
            IL +DP+L   + 
Sbjct: 648 KILGEDPNLEGEKY 661


>gi|217967527|ref|YP_002353033.1| ATP-dependent DNA helicase RecG [Dictyoglomus turgidum DSM 6724]
 gi|217336626|gb|ACK42419.1| ATP-dependent DNA helicase RecG [Dictyoglomus turgidum DSM 6724]
          Length = 779

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 238/690 (34%), Positives = 374/690 (54%), Gaps = 21/690 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            +   +GVG   +  L+++            DL+ Y+P  + DR    KISEI     VT
Sbjct: 96  SVQFAKGVGPHRAKLLNRL------EIHTIYDLITYYPRDYDDRSKLKKISEIKPGERVT 149

Query: 72  ITGYISQHSSFQ--LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I   I  +   +   +K    K  ++D TG    +++ +K   +K V   G ++ ++G+ 
Sbjct: 150 IKVKIIDYEETKTLYKKIPIIKAKISDNTGWAYAVWYGQK--YIKQVLPPGTELLISGEA 207

Query: 130 KKLKNRIIMVHPHYIFHNS----QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV- 184
           K+L   I   +P Y   +     + +N   I  +YSL +GL+  + +KII +AL+   + 
Sbjct: 208 KRLLKHIEFENPEYETLDEGEDKEFLNVGRIVPIYSLTSGLTQKVLRKIIYDALTDYSIF 267

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L + + K L +K +      +    H P         S   +R+ ++EL   Q+ L   R
Sbjct: 268 LEDPLPKYLREKYNLMDKPVSVWEKHFPTSFLTMASAS---KRITFEELFFLQLNLAKKR 324

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           ++ ++      N++ ++ +K L ++PF  TK+QE   ++I +D+S    M R+LQGDVGS
Sbjct: 325 REIEELSAPVFNIQSELVEKFLGSLPFKLTKAQEKVWEEIKKDLSSGRPMHRLLQGDVGS 384

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++A +A   A + G Q   M P  ILA+QHY  +K   +   I + ++T + P+  +
Sbjct: 385 GKTVIAALATILAYDNGYQTAFMVPTEILAEQHYNRLKNIFEPLGIKIALLTSSTPKKEK 444

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
                 +A G+  ++IGTHAL Q+ + + KL LVI+DEQHRFGV QR KL +K  APH+L
Sbjct: 445 TYIYLDLAEGKLPVVIGTHALIQEEVTFKKLGLVIIDEQHRFGVIQRAKLWKKGEAPHLL 504

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPR+L L   G++DIS I E P GRKP+ T +       +V   ++  + +GK+
Sbjct: 505 VMTATPIPRSLALVLYGELDISIIDELPPGRKPVITYLFSKKERRKVYSFVEKEIEKGKQ 564

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           A+ +CP IEE ++    S  + +  L + F   +I +IHG +   ++  +M+ F+ G  +
Sbjct: 565 AFVVCPLIEESEKLEAESAKKLYEELKKFFPRFNIGLIHGLVPREERTRIMEEFQKGEIQ 624

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ATTVIEVG+D+ +ASI++IENA+ FGLAQLHQLRGRVGRG E S C L+      +N
Sbjct: 625 ILVATTVIEVGVDIPNASIMVIENADRFGLAQLHQLRGRVGRGSEQSYCFLIADLK-GEN 683

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL V+  T DGF+IA +DL+ R  GE  G KQ G    L         L EIAR +A
Sbjct: 684 AKERLKVMVETNDGFVIANKDLEIRGPGEFFGTKQHGTLDVLFVDLTKDMKLFEIARNEA 743

Query: 664 KHILTQDPD-LTSVRGQSIRILLYLYQYNE 692
             ++    + +       +   L  Y   E
Sbjct: 744 FEVIKNQNERIEEYEKVLLNKWLNKYLRGE 773


>gi|331091213|ref|ZP_08340054.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404660|gb|EGG84199.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 686

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 241/692 (34%), Positives = 384/692 (55%), Gaps = 19/692 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +N L + +S  +GVG+K      K+            DL+ Y P ++       +ISE+ 
Sbjct: 1   MNEL-SNISELKGVGEKTEKLFYKL------GIFTVGDLIRYFPRTYDVYEKPVEISEVE 53

Query: 66  EERIVTITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           E R VT+TG I         +  +   + L D +G + +++F  +   LKN    G  IT
Sbjct: 54  EGRTVTVTGTIWGVVQVTGTRAMQITTLTLKDISGTLKVIWF--RMPFLKNTLRSGSVIT 111

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           + GK+ K K  + M  P   + +S+       ++ VY L  G++  +  K+  +AL  L 
Sbjct: 112 LRGKVTKRKRVLTMEQPEIFYPSSKYQEKENTLQPVYPLTAGITNHMIAKMEQQALENLD 171

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           +  E +  ++  +        A   IH P+  +++ +    RERL ++E L   ++L  +
Sbjct: 172 LKKEILPAEIRLRYHLAEYNYAVRGIHFPKNKEEYYYA---RERLVFEEFLLFILSLRQL 228

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +++ ++       V  K  ++ L  +P+  T +Q+   ++I +D++ +  M R++QGDVG
Sbjct: 229 KEKKERMQNTFSFVMPKEIEEFLDQLPYELTNAQKKVWEEIKRDITGEKVMTRLVQGDVG 288

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQ 361
           SGKT++AL+ +      G Q  +MAP  +LA+QHY  I++     +  + VE++TG+M  
Sbjct: 289 SGKTIIALLGLMLVGLNGYQGAMMAPTEVLAKQHYHSIREMLDKYHIPLKVELLTGSMAA 348

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +R A E+I  G+A +I+GTHAL Q+ ++Y  L LVI DEQHRFGV+QR KL++K   P
Sbjct: 349 KEKRIAYEKIGTGEADLIVGTHALIQEKVEYKNLALVITDEQHRFGVKQREKLSEKGNTP 408

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H+L+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++  +      E +K  + +
Sbjct: 409 HILVMSATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVDTSYRKTAYEFMKKQIGQ 468

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKN 539
           G++ Y ICP +EE +     +V +   +L E     I +  +HG+M    K+ +M+ F  
Sbjct: 469 GRQCYVICPMVEESETLEAENVTDYAKALQEELGEQIHVQYLHGKMKQAQKDEIMERFAR 528

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L++TTVIEVGI+V +++I++IENAE FGLAQLHQLRGRVGRGE  S CI +    
Sbjct: 529 NDVQVLVSTTVIEVGINVPNSTIMMIENAERFGLAQLHQLRGRVGRGEHQSYCIFMTGTK 588

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            SK +  RL +L  + DGF IA EDLK R  G++ GI+QSG+  F +A        L+ A
Sbjct: 589 -SKETKKRLEILNKSNDGFKIAGEDLKLRGPGDLFGIRQSGILDFKLADVFQDAKTLQNA 647

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
            + A  +L  DPDL     +++R  L  Y  +
Sbjct: 648 NEAANQLLEDDPDLEREENENLRKYLQKYMRD 679


>gi|327458866|gb|EGF05214.1| DNA helicase RecG [Streptococcus sanguinis SK1057]
          Length = 671

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 236/688 (34%), Positives = 382/688 (55%), Gaps = 27/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   L+   GVG K +   +K+            DLL Y P  + D      + ++ +  
Sbjct: 3   LHQSLTVLPGVGPKSAEKFAKL------GLETLQDLLLYFPFRYEDF-KSKNVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   ++ Q    +  ++      GE+ L   +     L +    G  I + GK
Sbjct: 56  KAVVSGQVVTPANVQYYGYKRNRLRFTIKQGEVALAVNFFNQPYLADKIEVGANIAIFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +       +        ++ VY L  G+S     K+I  A  +    +L 
Sbjct: 116 WDKAKASLTGMKLLTQVEDD-------LQPVYRLAQGISQASLVKLIKTAFDQGLDLLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL++    S  EA   +H P+   D+     A  R+ ++EL   Q+ L +++++
Sbjct: 169 ENLPQPLLERYQLVSRVEAVRAMHFPKDLADY---KQALRRVKFEELFYFQMRLQVLKRE 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + I+ +     +  +++PF  T +QE ++ +ILQD+     M R+LQGDVGSG
Sbjct: 226 TKAVSNGLKIDWQLDAVAEKKQSLPFELTSAQERSLTEILQDLRSPGHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM A   AG Q+ +M P  ILA+QH++ + +      +   ++TG M  A RR
Sbjct: 286 KTVVAGLAMYAVYTAGFQSALMVPTEILAEQHFDSLAQLFPELNL--ALLTGGMKAAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I +GQ  +I+GTHAL Q+ ++Y+ L LVI+DEQHRFGV+QR  L +K   P VL+
Sbjct: 344 ETLAAIENGQVDMIVGTHALIQEGVRYHALGLVIIDEQHRFGVEQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ LK  L +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELHKGAQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ +     L  +F   + +A++HG+M   +KE++M  FK G   
Sbjct: 464 YFISPLIEESEALDLKNAIALEEELTAYFGQQAKVALLHGKMKSEEKEAIMQDFKEGQTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGSKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGFL+AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKRRMKIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYN 691
             I T  P+  +     + I L+L + +
Sbjct: 643 SQI-TAVPNWRTDSNWHL-IALHLDKRD 668


>gi|119503539|ref|ZP_01625622.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2080]
 gi|119460601|gb|EAW41693.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2080]
          Length = 690

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 257/682 (37%), Positives = 386/682 (56%), Gaps = 21/682 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M  +  + L A + T RGVG K    L ++            D+L++ P  + DR     
Sbjct: 1   MTSTPSHALSASVGTLRGVGPKLQQRLEEL------GLCCVEDILYHFPLRYQDRTQLTA 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I  + +     I G I + SS    +R    + + DGTG +T+ FF+ +    + +   G
Sbjct: 55  IGSLKDGVDAVIQGSI-RLSSIVPGRRPTLIVKVEDGTGILTVRFFHFRRAQAQQM-KPG 112

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
             I + G+ ++    + MVHP Y   ++       +  +Y    GL    ++ +  +AL 
Sbjct: 113 LPIALFGQARRSGAGLDMVHPEYRLEDADIFLEAALTPIYPTVEGLGQGFWRNLTDQALI 172

Query: 181 RLPVLPEWIEKDLLQKKSFPSIA--EAFNIIHNPRKAKDF----EWTSPARERLAYDELL 234
              +L +   +DLL   +    A  EA   +H P          EW  PA+ RLA +EL+
Sbjct: 173 ---ILKQNSPEDLLHGIADSPFALVEAIQFLHRPPPNAPIDRIREWEHPAQLRLALEELV 229

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A  ++L ++R Q K  + + +  +  IA   L ++PF PT +Q+  I++I  DM+  + M
Sbjct: 230 AHNLSLQMLRAQEKACLAVAMKSDQSIAGPFLSHLPFKPTAAQQRVIQEIAHDMTLPSPM 289

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           LR++QGDVGSGKT VA +A   A+EAG Q  +MAP  +L +QH +  K++ +   + +  
Sbjct: 290 LRLIQGDVGSGKTFVAAMACITAIEAGQQVALMAPTELLGEQHLQTFKQWLEPFGVRIAW 349

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           ++G +    R   L+ I+ G   +++GTHALFQ+ + +  L LVIVDEQHRFGV QRL L
Sbjct: 350 LSGRVKGRARSAVLQEISEGSVALVVGTHALFQEGVTFASLALVIVDEQHRFGVHQRLAL 409

Query: 415 TQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           T+KA   T PH L++TATPIPRTL + +  D+D S I E P GR P++T ++   R D+V
Sbjct: 410 TEKASGPTLPHQLVLTATPIPRTLSMVAYADLDCSVIDELPPGRTPVQTTLLDSQRRDQV 469

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDK 530
           I+R+     EG++AYW+C  IEE +  + R+       L     +  I +IHGR+   DK
Sbjct: 470 IQRVGAGCGEGRQAYWVCTLIEESENLDARAAEATAELLQAQLPNLHIGLIHGRLPPADK 529

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E++M +FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S
Sbjct: 530 EAMMAAFKAGKIELLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGATAS 589

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+LLY  PLS+    RL V++ + DGF IAE+DL  R  GE+LG +Q+G+  F +AQ  
Sbjct: 590 HCVLLYQAPLSQRGRERLDVMRRSNDGFYIAEQDLLFRGPGELLGTRQTGLTSFRVAQLP 649

Query: 651 LHDSLLEIARKDAKHILTQDPD 672
            H+ LLE   + A+ ++   PD
Sbjct: 650 AHEMLLEQVAEIAESLVQNYPD 671


>gi|332664350|ref|YP_004447138.1| ATP-dependent DNA helicase RecG [Haliscomenobacter hydrossis DSM
           1100]
 gi|332333164|gb|AEE50265.1| ATP-dependent DNA helicase RecG [Haliscomenobacter hydrossis DSM
           1100]
          Length = 726

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 246/695 (35%), Positives = 385/695 (55%), Gaps = 25/695 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L +P+   +GVG K    L K +         F DLLF +PS +ID+     I++++E
Sbjct: 27  NILDSPIEYLKGVGPKKGELLRKEL-----GVATFGDLLFAYPSRYIDKTQFHHIADLTE 81

Query: 67  ER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           +   V + G + + S+    ++        D +G I+L++F      L+     G++  +
Sbjct: 82  DSGSVQLKGVLRRFSTEGEGRKTRLVGQFRDESGAISLVWF-TGISWLQKQLIIGQEYVI 140

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPT-----GLSVDLFKKIIVEAL 179
            G++   K+   + HP     ++++         VY         GL     +++I   L
Sbjct: 141 YGRVNAFKDAYSIPHPEMEVVSTENTQTATAFAPVYPSTEKLNAQGLDAKSRRRLIKLLL 200

Query: 180 SRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
            ++    LPE +   +++K  FPS  E+  +IH PR   + + ++    RL ++EL   Q
Sbjct: 201 EKIEPAQLPETLPAYVVKKFHFPSRFESILLIHFPRTEDELKASTN---RLKFEELFFLQ 257

Query: 238 IALLLMRKQFKKEIG-IPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRML 295
           + LL ++++ K E+        G       +N +PF  T +Q+  +K+I +D     +M 
Sbjct: 258 LRLLQIKRRRKDEVKGYVFEKIGDFFNNFYQNKLPFELTNAQKRVLKEIRRDFGLGIQMN 317

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VAL+AM  A++ G Q  +MAP  ILAQQH+  I  Y Q++ + V  +
Sbjct: 318 RLVQGDVGSGKTMVALLAMLMALDNGFQTCMMAPTEILAQQHFISISNYLQDSPVEVAFL 377

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR--LK 413
           +G++    R+  LER+A G+ HI+IGTHAL +D + +  L L I DEQHRFGV QR  L 
Sbjct: 378 SGSIKGKARKHILERLAAGEIHILIGTHALIEDWVVFKNLGLAITDEQHRFGVAQRAALW 437

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
              K   PHVL+MTATPIPRTL +T  GD+DIS I E P GRK I T+    N    VI 
Sbjct: 438 KKNKPFPPHVLVMTATPIPRTLAMTLYGDLDISVIDELPPGRKDIVTLHRTENHRLRVIG 497

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDK 530
            ++  ++ G++ Y + P IEE ++ + ++++  + ++   F      I+I+HG+M   DK
Sbjct: 498 FMREQIALGRQVYIVYPMIEESEKMDLQNLMSGYEAISREFPTPEFQISILHGKMKAADK 557

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           +  M  F  G  ++++ATTVIEVG++V +AS+++IEN E FGL+QLHQLRGRVGRG E S
Sbjct: 558 DFEMQRFVRGETQIMVATTVIEVGVNVPNASVMVIENTERFGLSQLHQLRGRVGRGAEQS 617

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+L+    LSK+S  R+  +  T +GF IAE DLK R  G++ G +QSG+    +A   
Sbjct: 618 YCLLMSSFKLSKDSKERIQTMVRTNNGFEIAEADLKLRGPGDLEGTQQSGIVNLRLADLA 677

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
               +L  AR+ A  IL  DP L     + + + L
Sbjct: 678 KDGKILAAAREVAARILDDDPYLKRPEHEVLAVQL 712


>gi|294500971|ref|YP_003564671.1| ATP-dependent DNA helicase RecG [Bacillus megaterium QM B1551]
 gi|294350908|gb|ADE71237.1| ATP-dependent DNA helicase RecG [Bacillus megaterium QM B1551]
          Length = 682

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 236/687 (34%), Positives = 373/687 (54%), Gaps = 24/687 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +N L    +   +G+G++ +  L       + +     DLL + P  + D      ++E 
Sbjct: 1   MNELTTISIKAIKGIGEETAQALE------DMHIHSVHDLLEHFPYRYEDY-ELKDLAEA 53

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRK 122
             +  VT+ G +    S     ++  ++          IT+  F R     K+     + 
Sbjct: 54  KHDEKVTVEGKVHSVPSLTYYGKKRSRLTFRLLVNRYLITVTCFNR--PYYKSKLEIDQT 111

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           +TVTGK  + +  I +         S  V    IE VYS+   L+V   +K +  AL   
Sbjct: 112 VTVTGKWDQHRQTINLQ----ELQFSPFVKNQTIEPVYSVKGSLTVKGMRKFVSLALKNY 167

Query: 183 -PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              + + +   +  +    +  EA   IH PR  +D      AR R  Y+E L  Q+ + 
Sbjct: 168 GSSIQDMLPASIRSRYKLVTREEAVRSIHLPRDHEDL---KQARRRFVYEEFLLFQLKMQ 224

Query: 242 LMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            +RK+  ++  G+    +          +PF  T +Q+  + +I  DM    RM R+LQG
Sbjct: 225 ALRKREREETPGMKQVFDSTELVNFTNLLPFPLTNAQKRVVNEITHDMKSPYRMNRLLQG 284

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A+ A V AG Q  +M P  ILA+QH E +    +   I V ++TG++ 
Sbjct: 285 DVGSGKTVVAAVALYATVLAGHQGALMVPTEILAEQHAESLTAMLEKVGISVGLLTGSVK 344

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+ L+R+  G  H+++GTHAL QD + Y  L LVI DEQHRFGV QR  L +K  +
Sbjct: 345 GKARRELLQRVKDGDVHVLVGTHALIQDEVIYNSLGLVITDEQHRFGVGQRRVLREKGES 404

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL MTATPIPRTL +T  G++D+S I E PAGRK I+T  +  + ++ ++  ++  + 
Sbjct: 405 PDVLFMTATPIPRTLAITVFGEMDVSIIDEMPAGRKAIETYWVKHDMLERILHFVEKEIH 464

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFK 538
           +G++AY ICP IEE  + + ++ ++   +L  +F   +S+ ++HGR+S  +KE VM  F 
Sbjct: 465 DGRQAYVICPLIEESDKLDVQNAIDVHATLTHYFNGKASVGLMHGRLSPDEKEEVMKQFS 524

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG+  S CILL  P
Sbjct: 525 VNDVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGDAQSYCILLADP 584

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             S+    R++++  T DGF+++E DL+ R  G+  G KQSGMP+F +A        LE+
Sbjct: 585 K-SEVGKERMTIMTETNDGFVLSERDLELRGPGDFFGRKQSGMPEFKVADMVHDYRALEV 643

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILL 685
           AR+DA  ++  D   T  +   +RI L
Sbjct: 644 AREDAAKLVNSDSFWTEDQFALLRIQL 670


>gi|125973793|ref|YP_001037703.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum ATCC
           27405]
 gi|281417950|ref|ZP_06248970.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum JW20]
 gi|125714018|gb|ABN52510.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum ATCC
           27405]
 gi|281409352|gb|EFB39610.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum JW20]
 gi|316940014|gb|ADU74048.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum DSM 1313]
          Length = 694

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 234/689 (33%), Positives = 362/689 (52%), Gaps = 19/689 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M       L   +   +GVG   +    K+            DL+ + P  + DR    K
Sbjct: 1   MNGDMKEILKKSIKNVKGVGDARAKLFHKL------GIFSIEDLITHFPYDYEDRSNIKK 54

Query: 61  ISEISEERIVTITGYISQHSSFQ--LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
           I +++E    T  G I    + +   Q    Y+  + D TG I   ++ +    +K V  
Sbjct: 55  ICQLTEGESCTFEGIIMSKVTERKIRQGLTLYQAYIKDDTGTIIATWYNQ--PYIKKVLT 112

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFH-NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
            G      GKI +    + + +P Y      +  N   I  VY     L+ +  + ++  
Sbjct: 113 VGESYIFYGKIVRGYKTLEVQNPVYEKACKEEHKNTMKIVPVYHATANLTQNTIRTVMQN 172

Query: 178 ALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL  +   L + +   + +K     I  AF+ IH PR   D      AR RL ++EL   
Sbjct: 173 ALELVDGNLEDVLPLWVRKKYCLCDINYAFSNIHFPRNDGDI---KNARYRLVFEELFLL 229

Query: 237 QIALLLMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ LL ++         I      K     + +I F+ T +Q+   ++I +DM     M 
Sbjct: 230 QLGLLSVKTVLSDGKEGIAFAPNRKEMVDFINSIGFTLTNAQKRVWEEIEKDMESNRVMN 289

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA +A+A AV++G Q  +M P  ILA+QHYE +K       I V ++
Sbjct: 290 RLVQGDVGSGKTIVAALALAKAVKSGYQGAMMVPTEILAKQHYESLKDIMGKHGINVALL 349

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
            G+  +  R + L +I  G+ +I+IGTHAL ++ +++ KL LVI DEQHRFGV+QR  L+
Sbjct: 350 VGSQTKKQRSEILSKIESGEVNIVIGTHALIEEKVKFSKLGLVITDEQHRFGVRQRAMLS 409

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K   P +L+MTATPIPRTL L   GD+DIS I E P GRKP+KT  +  +    +   +
Sbjct: 410 NKGINPDILVMTATPIPRTLALILYGDLDISIIDELPPGRKPVKTYAVDNSMRQRINNFI 469

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH--FTSSIAIIHGRMSDIDKESV 533
           K  + EG++AY ICP ++E  E   +S ++    + +       + ++HG+M   +KE V
Sbjct: 470 KKQILEGRQAYIICPLVDESDEIEAKSALKTAEKIAKEDFKDFRVGLLHGKMPAGEKEEV 529

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F  G   +L++TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRG   S CI
Sbjct: 530 MQKFLKGEIDILVSTTVVEVGVNVPNATLMVVENAERFGLAQLHQLRGRVGRGPHQSYCI 589

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L Y+   S+ +  R+ V++ T DGF+I+E+DL  R  GE  G +Q G+P   IA      
Sbjct: 590 L-YNESKSQIAKERMKVMQETTDGFVISEKDLLIRGPGEFFGTRQHGLPDLKIANLYRDM 648

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIR 682
            +L+ A++ A+ IL +D +L       ++
Sbjct: 649 EILKKAQEAAQEILKRDRNLFMEENLKLK 677


>gi|239826579|ref|YP_002949203.1| ATP-dependent DNA helicase RecG [Geobacillus sp. WCH70]
 gi|239806872|gb|ACS23937.1| ATP-dependent DNA helicase RecG [Geobacillus sp. WCH70]
          Length = 682

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 238/685 (34%), Positives = 382/685 (55%), Gaps = 23/685 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  P++  +G+G++ S  L ++        T   +L  + P  + D      ++E+  
Sbjct: 3   RELQQPVTAIKGIGEETSEALREM------GITTIEELFMHIPYRYEDY-EIKDLAEVKH 55

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKIT 124
           +  VT+ G +    S     ++  ++      G   IT++ F R    LK        +T
Sbjct: 56  DEKVTVEGKVHSEPSLTYYAKKKSRLTFRLLVGRYLITVVCFNR--PYLKGKLSINDTVT 113

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-P 183
           V GK  + +  I      Y            IE VYS+   ++V   ++ I  AL++   
Sbjct: 114 VIGKWDQHRQMITA----YELKLGPLPQKREIEPVYSVRGSITVKGMRRFIKLALTQYGE 169

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + +   + Q     S  EA   IH PR  ++      AR RL Y+E L  Q+ +  +
Sbjct: 170 AIVDPLPLSIRQTYRLISKQEAIRAIHFPRSHEEL---KQARRRLVYEEFLLFQLKIHAL 226

Query: 244 RK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           RK Q +   GI  +   +     ++ +PFS TK+Q+  + +IL DM    RM R+LQGDV
Sbjct: 227 RKVQREYSEGIAHSFSEEKLHAFIQQLPFSLTKAQQRVVHEILADMRSPYRMNRLLQGDV 286

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA I + AAV +G Q  +M P  ILA+QH + ++    +T + V ++T ++   
Sbjct: 287 GSGKTVVAAIVLYAAVLSGYQGALMVPTEILAEQHAQSLQTLFASTNVAVALLTSSVKGK 346

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R++ LE++A G   IIIGTHAL Q+ + + KL LVI DEQHRFGV+QR  L +K  +P 
Sbjct: 347 KRKEILEQLACGDIDIIIGTHALIQEEVNFKKLGLVITDEQHRFGVEQRRILREKGQSPD 406

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T+ G++D+S I E PAGRK ++T  +  +  + V++ ++  + +G
Sbjct: 407 VLMMTATPIPRTLAITAFGEMDVSVIDEMPAGRKKVQTYWVKHHMFERVLDFIEKEIQKG 466

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540
           ++AY ICP IEE ++ + ++ ++  + L  ++     I ++HGR+S  +KE VM +F   
Sbjct: 467 RQAYVICPLIEESEKLDVQNAIDVHSMLTHYYKGKYHIGLMHGRLSSEEKEEVMKAFSEN 526

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+E S CIL+  P  
Sbjct: 527 RVQVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDEQSYCILIADPK- 585

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSGMP+F          +LE+AR
Sbjct: 586 SETGKERMRIMTETTDGFVLSEKDLQLRGPGDFFGTKQSGMPEFKFGDVVHDYRILEVAR 645

Query: 661 KDAKHILTQDPDLTSVRGQSIRILL 685
            DA  ++           Q +R+ L
Sbjct: 646 NDAAKLVQSTAFWRDEPYQWLRLYL 670


>gi|332186177|ref|ZP_08387923.1| OB-fold nucleic acid binding domain protein [Sphingomonas sp. S17]
 gi|332013992|gb|EGI56051.1| OB-fold nucleic acid binding domain protein [Sphingomonas sp. S17]
          Length = 684

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 275/702 (39%), Positives = 425/702 (60%), Gaps = 20/702 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA +++ +GVG   +  L ++         R +D+ F+ P+  IDR  R +
Sbjct: 1   MRPDILNPLFAEVTSLKGVGPGLAKPLERLR------IARVVDVAFHLPTGHIDRFPRDE 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFE 119
           +      R++ I+  + +H       R P ++   D  G  + L++F   +  +K +   
Sbjct: 55  LMVSDAGRVIAISLTVKEHR-VSSSPRGPTRVRAEDARGNSVALVYFGGNSGWVKKLLPV 113

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V+G++      + +VHP          +F   EA+Y L  G++      +  +A+
Sbjct: 114 GETKIVSGRLDLYGQDLQIVHPD---LGDSTEDFREREAIYPLSEGITSRRLGALAAQAV 170

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            R P LPEWIE  L  ++ +P   +A   IH      D    + ARERL YDE+ A Q+A
Sbjct: 171 ERAPELPEWIEPGLKAQRGWPDWKDALARIHA--DPAD----AKARERLGYDEVFANQLA 224

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           + L+R   +K  G  +N +G++   +   +P++ T +Q   +++I  D++Q   MLR+LQ
Sbjct: 225 MTLVRADTRKRRGRALNGDGRLRDML--KLPYTLTGAQSRTVREIEGDLAQDAPMLRLLQ 282

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKTLVA +AM  AVEAG QA ++AP  ILA+QHYE ++K      + + ++TG  
Sbjct: 283 GDVGAGKTLVAAMAMLIAVEAGAQAAMLAPTEILARQHYETLRKTLAGLPVEIAVLTGRD 342

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-A 418
               R   L  +A G+  I++GTHA+FQ+++ Y  L LV+VDEQHRFGV QR+ L+ K  
Sbjct: 343 KGKAREATLMALAAGEIDILVGTHAIFQETVTYRDLALVVVDEQHRFGVAQRMMLSAKGK 402

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH+L MTATPIPRTL L + G++D+S++ E P GR+PI+T ++  +R+DEV+  L   
Sbjct: 403 APPHLLAMTATPIPRTLTLANYGEMDVSRLDEMPPGRQPIETRVVSEDRLDEVVNALGRH 462

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           LS+G +AYW+CP +EE ++S+  +   R  SL   F   + ++HG+M   +K++VM++F 
Sbjct: 463 LSDGGQAYWVCPLVEESEKSDLAAAEMRAESLRARFGERVGLVHGKMKPAEKDAVMEAFA 522

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTVIEVG+DV +A++I+IE+A+ FGLAQLHQLRGRVGRG  +S C+LL   
Sbjct: 523 GGRLGVLVATTVIEVGVDVPNATLIVIEHADRFGLAQLHQLRGRVGRGGGLSRCLLLRGS 582

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            LS+ S  RL++++ T DGF IAEEDL+ R  GE+LG +QSG   F +A PE    L++ 
Sbjct: 583 HLSETSRARLALMRETNDGFRIAEEDLRLRGAGELLGTRQSGELAFRLATPENMADLMQC 642

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A+ DA+ ++ +D  L + RGQ+ R  LYL++ +     +R+G
Sbjct: 643 AQDDARLLIDRDGGLEAPRGQAARTALYLFERDAGVALLRSG 684


>gi|326798578|ref|YP_004316397.1| ATP-dependent DNA helicase RecG [Sphingobacterium sp. 21]
 gi|326549342|gb|ADZ77727.1| ATP-dependent DNA helicase RecG [Sphingobacterium sp. 21]
          Length = 703

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 243/705 (34%), Positives = 373/705 (52%), Gaps = 24/705 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG + +  L K +         F DL+ Y+P  +IDR    KI ++  + 
Sbjct: 8   LHTPIEYLKGVGPQKADLLKKELA-----IYTFGDLVHYYPFRYIDRTKYYKIKDLHPDM 62

Query: 69  I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V I G ++       ++ +       D TG + L++F +    L+     G    + G
Sbjct: 63  PSVQILGRLTAVEQIGQKRGKRLVAQFKDETGLMELVWF-QSIRWLEKSLKIGSVYIIFG 121

Query: 128 KIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR---- 181
           K      +  M HP    +N+  ++V  P ++ VY     L         ++ L      
Sbjct: 122 KPTLFNGQFAMTHPEMELYNAANKNVGNPSLQPVYRSTEKLKQSFLDTKGIQRLQEGLVA 181

Query: 182 --LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
                + E +   LL+++   S AEA   IH P   ++ +       RL ++EL   Q+ 
Sbjct: 182 WASKKMEENLPSYLLKEQHLISKAEAITHIHFPSSVEELKAAE---RRLKFEELFFIQLK 238

Query: 240 LLLMRK-QFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           LL  +  Q  K  G   +  G         ++PF  T +Q+  IK+I  D     +M R+
Sbjct: 239 LLKNKLLQTHKFKGHVFDKVGSNFNAFYQEHLPFPLTNAQKRVIKEIRHDTHTGAQMNRL 298

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VAL+ M  AV+ G QA +MAP  ILAQQH+  +     +  + +++++G
Sbjct: 299 LQGDVGSGKTVVALMTMLLAVDNGCQACMMAPTEILAQQHFNGLISLIGDLPVSIKLLSG 358

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQ 416
           + P+  R+   E +  G   I++GTHAL +D++Q+  L LV++DEQHRFGV+QR KL  +
Sbjct: 359 STPKKERKILHENLLDGSLDILVGTHALIEDTVQFKNLGLVVIDEQHRFGVEQRAKLWRK 418

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH+L+MTATPIPRTL +T  GD+D+S I E PAGRKPIKT+ +  +    +   ++
Sbjct: 419 NQIPPHMLVMTATPIPRTLAMTLYGDLDVSVIDELPAGRKPIKTLHLFESSRLRMFGFMR 478

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESV 533
             +++G++ Y + P I+E ++ +   +     +L   F      I+I+HG+M   DK+  
Sbjct: 479 DEIAKGRQVYVVYPLIKESEKLDLMHLEAGIENLAREFPLPRYKISIVHGKMPAKDKDFE 538

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F  G  ++++ATTVIEVG++V +A+++IIENAE FGL+QLHQLRGRVGRG E S CI
Sbjct: 539 MQRFVKGETQIMVATTVIEVGVNVPNATVMIIENAERFGLSQLHQLRGRVGRGGEQSFCI 598

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+    LS     RLS +  T DGF IAE DLK R  G+I G +QSG+    +A      
Sbjct: 599 LMSSNKLSTEGKLRLSTMVKTNDGFEIAETDLKLRGPGDIAGTQQSGILDLKLADLSTDQ 658

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
            LL+ AR    +I  QDP L   + + +R  L +     ++  I 
Sbjct: 659 VLLQDARNLVINIFKQDPKLEDPKNRLLRDHLLVQSKGISWDKIS 703


>gi|15674226|ref|NP_268401.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12725313|gb|AAK06342.1|AE006453_6 ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 666

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 242/675 (35%), Positives = 372/675 (55%), Gaps = 32/675 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG K      K+            DLL Y P  + D   R  + E+ +  
Sbjct: 3   LTDSVQFLKGVGPKSVENFHKL------GIFTVQDLLLYFPFRYEDFASR-SVFELVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             TI G +   ++ Q    KR      + +G   + + FF +    L +    G++I V 
Sbjct: 56  KATIIGTVVTPANVQYYGFKRNRLSFKIKEGEAVVAVSFFNQ--PYLADKVEVGKEIAVY 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPV 184
           GK ++ K +++ +    +     D     +E VY L  G+      K+I +      L  
Sbjct: 114 GKWEQAKQQLMGMK---VVAQVDDG----LEPVYHLAAGMKQSQLVKVIHQVFESDLLSE 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE + + L++K    +  EA   +H P   +D E    A  R+ ++EL   Q+ L  ++
Sbjct: 167 LPENLPEFLIKKYRLMNRQEAVLAMHFP---EDMEAHKQALRRVKFEELFMFQLKLQALK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K    G+ +  E     + +  +PF  T +Q SA+ +IL DM     M R+LQGDVG
Sbjct: 224 NKEKSGRAGLEVVFEQGEIDQKISELPFELTGAQLSALSEILTDMKSPYHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM AA  A  QA IM P  ILA+QH+  +K      QI   ++   +  A 
Sbjct: 284 SGKTVVASLAMYAACLANFQAAIMVPTEILARQHFANLKALFPELQI--SLLVSGLKVAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  +  G  H+++GTHAL Q+ + +Y L LVI DEQHRFGV QR  L +K   P V
Sbjct: 342 RREILADLVSGHTHMVVGTHALIQEGVNFYNLGLVITDEQHRFGVNQRKILREKGQNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I E P GR+PI T  +   +  EV+  +K  +++  
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDELPKGRQPITTRWVKHEQFSEVLSWIKAEVAKDS 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++    F  L+E+F   + I ++HG+M + +K+ +M  FK   
Sbjct: 462 QVYFISPLIEESETLDLKNAEALFAELNEYFGLFAKIGLLHGKMKNDEKDQIMQEFKAKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG+DV +A+I++I +A+ FGL+QLHQLRGRVGRG + S  IL+ +P  S
Sbjct: 522 LDILVSTTVIEVGVDVPNATIMVIMDADRFGLSQLHQLRGRVGRGTKKSYAILVANPK-S 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R+ ++  T++GF++AEEDLK R  GEI G++QSG+P+F+ A      ++LE+ARK
Sbjct: 581 DSGKQRMKIMTETQNGFILAEEDLKMRGSGEIFGLRQSGLPEFIAADLVNDYNILEVARK 640

Query: 662 DAKHIL---TQDPDL 673
           +A  I     + PDL
Sbjct: 641 EAVEIFKNADEFPDL 655


>gi|298208660|ref|YP_003716839.1| ATP-dependent DNA helicase recG [Croceibacter atlanticus HTCC2559]
 gi|83848583|gb|EAP86452.1| ATP-dependent DNA helicase recG [Croceibacter atlanticus HTCC2559]
          Length = 700

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 242/700 (34%), Positives = 381/700 (54%), Gaps = 23/700 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG   +  L   ++        F DLL + P  +ID+    KI+E+    
Sbjct: 5   LQTPIDYLKGVGTNRADLLRTELD-----IHTFQDLLNFFPFRYIDKTKYYKINELQRNS 59

Query: 69  I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V + G I+   + + ++ +       D TG++ L++F R  + +K          + G
Sbjct: 60  ADVQVIGKITHIKTVEQKRGKRLVADFIDDTGKMELVWF-RGHKWIKENLKLNTAYVIYG 118

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPT-----GLSVDLFKKIIVEAL-S 180
           K+        M HP    + +      + ++ VYS        G++     K++ +    
Sbjct: 119 KVNHYNGTFSMPHPEMEPYATHKEEVKIAMQPVYSSTEKLTNKGITQRFMGKMMQQVFIQ 178

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
                 E +   L ++    S  +A   IH P+ +   E  + A+ RL ++EL   Q+ +
Sbjct: 179 TGATYEETLAAPLREELKLISKTQALRNIHFPKNS---ELLAKAQFRLKFEELFYIQLQM 235

Query: 241 LLMRKQFKKE-IGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L    Q K+   G P +  G++       ++PF  T +Q+  IK+I  D+    +M R+L
Sbjct: 236 LSKNLQRKQRLKGFPFDQVGEVFNDFYENHLPFELTNAQKRVIKEIRNDLGSSAQMNRLL 295

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL+ +  A++   QAV+MAP  ILAQQHY+ IK    +  I V ++TG+
Sbjct: 296 QGDVGSGKTIVALMCVLLAIDNNFQAVLMAPTEILAQQHYQGIKDLVAHLDIKVNLLTGS 355

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           + ++ R    E +  G  +++IGTHA+ +D +Q+  L L I+DEQHRFGV QR KL +K 
Sbjct: 356 VKKSARTLIHEALEDGTLNLLIGTHAVLEDKVQFKNLGLAIIDEQHRFGVAQRSKLWRKN 415

Query: 419 T-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
           T  PH+L+MTATPIPRTL ++  GD+DIS I E P GRK IKTV    +    V   ++ 
Sbjct: 416 TIPPHILVMTATPIPRTLAMSVYGDLDISVIDELPPGRKAIKTVHRFDSHRLRVFRFIRD 475

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVM 534
            + +G++ Y + P I+E +  +++ +++ + S+   F      ++I+HG+M   DK+  M
Sbjct: 476 EIEKGRQVYVVYPLIQESEVLDYKDLMDGYESIVRDFPLPEYQVSIVHGQMKPADKDYEM 535

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G   +++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E S CIL
Sbjct: 536 QRFVEGKTHIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGAEQSFCIL 595

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +    LS +S TRL  +  T DGF IAE DLK R  G+++G +QSG+    IA     ++
Sbjct: 596 MTGHKLSDDSKTRLETMTRTNDGFEIAEVDLKLRGPGDMMGTQQSGVLNLKIADIVKDNN 655

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           +L++AR  A  IL +DP L+       R +  L   ++  
Sbjct: 656 ILKLARSYAYAILKEDPSLSDDSNAIYRKIYKLLGKDKTI 695


>gi|284049968|ref|ZP_06380178.1| ATP-dependent DNA helicase RecG [Arthrospira platensis str. Paraca]
          Length = 822

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 256/717 (35%), Positives = 402/717 (56%), Gaps = 38/717 (5%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P  L  L   L     VG + S  L+++            DLL+Y+P   ID   +  I 
Sbjct: 121 PPKLPELDQGLKEL--VGPRNSDLLARL------GIYTIYDLLYYYPRDHIDYARQVPIK 172

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM------- 112
           E+     VTI   + + + F   K R   IL   + D TG++ +  FY            
Sbjct: 173 ELEPGETVTIVAEVKRCNCFSSPKNRQLTILELIVKDRTGQLKISRFYAGNRYSNKGWQH 232

Query: 113 -LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-----FPLIEAVYSLPTGL 166
             K  +  G  I  +G +KK K  I + +P     +  D +        +  VY L  G+
Sbjct: 233 KQKYNYPPGAIIAASGLVKKNKYGITLDNPELEILDRADSHAASMKIGRVLPVYPLSEGI 292

Query: 167 SVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226
             DL +K ++ AL     LPE +   L +K     I++A   IH P      +W + AR 
Sbjct: 293 GADLVRKAVLAALPAANKLPESLPPKLREKYQLIEISDAITNIHFPPNR---DWLAAARR 349

Query: 227 RLAYDELLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           RL +DE    QI LL  R+  K       +  +G++ ++  + +PF  TK+Q+  I++IL
Sbjct: 350 RLVFDEFFYLQIGLLQRRQVSKTNEKSAALLPQGELIEQFYKMLPFELTKAQKRVIEEIL 409

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D++ +  M R++QGDVG+GKT+VA++AM AA++AG Q  +MAP  +LA+QHY+ +  + 
Sbjct: 410 TDLNSEEPMNRLIQGDVGAGKTVVAVVAMLAAIQAGYQTALMAPTEVLAEQHYQKLVGWL 469

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
               + VE++TG+   A RR+   ++  G+  +++GTHAL QD + ++KL LV++DEQHR
Sbjct: 470 NLMHLPVELLTGSTKTAKRRQIHAQLQTGELPVLVGTHALIQDPVNFHKLGLVVIDEQHR 529

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV QR KL QK  +PHVL MTATPIPRTL LT  GD+D+S++ E P GR+PI+T ++  
Sbjct: 530 FGVHQRAKLQQKGESPHVLTMTATPIPRTLSLTLHGDLDVSQLDELPPGRQPIQTTMLSG 589

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHG 523
            +  E  + +   +++G++ Y + P +EE ++ + RS VE    L        +IA++HG
Sbjct: 590 RKRQEAYDLISREVAQGRQVYVVLPLVEESEKLDVRSAVEEHQKLQTKIFPELAIALLHG 649

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           RMS  +KE+ +  F+ G   +L++TTV+EVG+DV +A++++IENAE FGL+QLHQLRGRV
Sbjct: 650 RMSSQEKEAAIAKFREGETNILVSTTVVEVGVDVPNATVMLIENAERFGLSQLHQLRGRV 709

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG   S C+L+     S  +  RL VL+ ++DGF IAE D++ R  G++LG +QSG+P 
Sbjct: 710 GRGAHKSYCLLMSGSS-SPEAKQRLQVLEQSQDGFFIAEMDMELRGPGQVLGTRQSGLPD 768

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           F +A       +LE+AR+ A+ ++ +D  L        R    + +++  +Q +  G
Sbjct: 769 FALASLVEDREVLELAREAAQKVIQKDYTLQ-------RWPAMVAEWDRRYQKMMGG 818


>gi|15615058|ref|NP_243361.1| ATP-dependent DNA helicase RecG [Bacillus halodurans C-125]
 gi|10175115|dbj|BAB06214.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
          Length = 673

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 229/675 (33%), Positives = 370/675 (54%), Gaps = 19/675 (2%)

Query: 15  TFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74
             RG+G + +  L+ +            DLL + P  + D      I EI  +   T+ G
Sbjct: 2   EVRGIGDETAKQLASLQ------LYSVFDLLEHFPFRYEDY-QVRPIEEIKHDERATVVG 54

Query: 75  YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
            +    + +   ++  ++ +    G + L   +     LK     G+++T+TGK  + + 
Sbjct: 55  TVQSEPTVRYYGKKKNRMSVRVLVGHVLLTAVFFNRAFLKQQLKVGQEVTLTGKWDQHRL 114

Query: 135 RIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDL 193
            + +                 +E +YS+   L+    KK I  AL +    + + +  ++
Sbjct: 115 TLTVN----EVKQGNHTERATVEPIYSVSGKLTSKTLKKYIHVALRQFGEQITDPLPPEI 170

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIG 252
            ++    S  EA   +H P    D E    AR R+ Y+E L  Q+ +   RK   ++  G
Sbjct: 171 RERYKLVSKREAVFHLHMPS---DREALKQARRRMVYEEFLFFQLKMQAFRKVNREQSNG 227

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
             + V  +   + +  +PFS T++QE    +IL DMS   RM R+LQGDVGSGKT+VA I
Sbjct: 228 RAVKVNEQKVDQFIAALPFSLTEAQEKVAGEILTDMSSPYRMNRLLQGDVGSGKTVVAAI 287

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M AAV AG QA +M P  ILA+QH + +++    + + + ++TG++    R+ A+  + 
Sbjct: 288 CMFAAVTAGKQAALMVPTEILAEQHAQSLERLFAPSGVRLTLLTGSVKGKRRQAAVTAVK 347

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            G   ++IGTHAL QD + ++ L LVI DEQHRFGV+QR  L  K   P VL MTATPIP
Sbjct: 348 AGDVDVVIGTHALIQDDVAFHDLGLVITDEQHRFGVEQRRALRDKGAYPDVLFMTATPIP 407

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL +++ GD+D+S I + PAGRK I+T     + +  V++ ++  L++G++AY ICP I
Sbjct: 408 RTLAISAFGDMDVSIINQMPAGRKEIETYWAKHDMLTRVLDFMEKELAKGRQAYVICPLI 467

Query: 493 EEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           EE ++ + ++ ++  + L +HF     + ++HGR+   +K++VM +F     ++L++TTV
Sbjct: 468 EESEKLDVQNAIDVHSILQQHFEPRFQVGLMHGRLHPSEKDTVMTAFSENKIRILVSTTV 527

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG++V +A+I++I +AE FGLAQLHQLRGRVGRGE  S CILL  P  S+    R+ +
Sbjct: 528 VEVGVNVPNATIMVIYDAERFGLAQLHQLRGRVGRGEHQSYCILLADPK-SEVGKERMRI 586

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           +  T DGF ++E DL+ R  G+  G KQSG+P F +A        LE AR+DA  ++   
Sbjct: 587 MTETNDGFTLSERDLELRGPGDFFGAKQSGLPDFKVADVVHDYRALETARQDAATLVNSK 646

Query: 671 PDLTSVRGQSIRILL 685
              +  + + +   L
Sbjct: 647 TFWSDPKYRELVTYL 661


>gi|288925182|ref|ZP_06419117.1| ATP-dependent DNA helicase RecG [Prevotella buccae D17]
 gi|288337947|gb|EFC76298.1| ATP-dependent DNA helicase RecG [Prevotella buccae D17]
          Length = 699

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 240/676 (35%), Positives = 375/676 (55%), Gaps = 22/676 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +    GVG +    LS+ +         + DL  Y+P  ++DR     I E++ + 
Sbjct: 5   LDQDIMYLPGVGPRRKEILSREL-----GINTYGDLAEYYPYKYVDRSRLYTIDELTADM 59

Query: 69  I-VTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             V + G I     F +  +++      +DG G + L++F   T+ + + +  G    V 
Sbjct: 60  PFVQLKGRILSFDEFVMGPRKKRIVAHFSDGHGVVDLVWFN-GTKYVYDSYKTGTDYIVF 118

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGL-----SVDLFKKIIVEALSR 181
           GK      R   VHP     +   ++   ++  YS    +     +    +KI    + +
Sbjct: 119 GKPGIFGGRYQFVHPDIDDASKLQLSEMGMQPYYSTTEKMKKANFTSRGIEKITKTLIEK 178

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           L P LPE +   +L +    S  +A   IH P+ A + +     R RL ++EL   Q+ +
Sbjct: 179 LSPQLPETLPDFILNRLHLVSRPQALRWIHYPKNADEMQRA---RLRLKFEELFYVQLNI 235

Query: 241 LLMRK-QFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L       +K  G   N  G I     R+ +PF  T +Q+  + +I  DM    +M R+L
Sbjct: 236 LRYASDNRRKYRGYVFNRVGDIFNGFYRHNLPFPLTGAQKRVMHEIRADMGSGRQMNRLL 295

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVAL++M  A++ G QA IMAP  ILA+QH   IK + +   I VE++TG 
Sbjct: 296 QGDVGSGKTLVALMSMLIALDNGFQACIMAPTEILAEQHLHTIKDFLKGMDIRVELLTGI 355

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    R++ L  +  G  HI +GTHAL +D++Q+ +L L +VDEQHRFGV QR KL  K 
Sbjct: 356 VKGKKRKEVLAGLLDGSIHIAVGTHALIEDTVQFRQLGLAVVDEQHRFGVAQRAKLWAKN 415

Query: 419 TA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N+   + + ++ 
Sbjct: 416 ENPPHVLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKYDNQTTSLYQGIRQ 475

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDS 536
            ++EG++ Y + P I+E ++ + +++ E + +L + F    ++ +HGRM   +KE  M  
Sbjct: 476 QIAEGRQVYIVFPLIKESEKMDLKNLEEGYEALKDVFPGYRMSKVHGRMKAAEKEEEMQK 535

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ 
Sbjct: 536 FVKGETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVT 595

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSL 655
           +  LS  +  R+ ++ +T DGF IAE DLK R  G++ G +QSG+     IA       +
Sbjct: 596 NYQLSAETRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQI 655

Query: 656 LEIARKDAKHILTQDP 671
           +++AR +A+ I+  DP
Sbjct: 656 IQLARDEAQKIIEDDP 671


>gi|332972878|gb|EGK10821.1| DNA helicase RecG [Kingella kingae ATCC 23330]
          Length = 680

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 232/659 (35%), Positives = 361/659 (54%), Gaps = 15/659 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L+K+      +     DL  + P  + D      I+         + G +  H   Q
Sbjct: 16  ATKLAKL------HLHTAWDLALHLPLRYEDETQVVPIAAAPIGESCQVEGVVL-HQEVQ 68

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + D +G +  L F       +    +G+ +   G+IK+      M+HP  
Sbjct: 69  FKPRKQLIVQIQDESGSVLNLRFIHFYPNHQKQLAQGQTVRALGEIKRGYYGDEMIHPKI 128

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                 D+   L+  +Y    GL+    +K++  AL  +  L E +  + L+K     +A
Sbjct: 129 KSPEKSDLAQ-LLTPIYPTTNGLNQPTLRKVVQTALETVD-LSEILPDNYLKKYQLIPLA 186

Query: 204 EAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           ++   +HNP         +    P   RL +DELLA Q+++ L R++ +      +   G
Sbjct: 187 QSLRTLHNPPPDWSLSMLTNGALPEWRRLKFDELLAQQLSMRLARQRRRAGNARALVSTG 246

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           K+++K+L  +PF  T++Q+    +I +D+++   M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 247 KLSEKLLSYLPFDLTRAQKKVCAEIREDLAKPVPMHRLLQGDVGSGKTIVAALSALMALE 306

Query: 320 -AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G Q  IMAP  ILA+QH+   K++ +   I V  ++G++ +  + +A   +A G+  +
Sbjct: 307 SDGVQVAIMAPTEILAEQHFIKFKQWFEPLGISVAWLSGSLKKKEKDQAKAALADGRIRV 366

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            +GTHALFQD + ++ L LVIVDEQHRFGV QRL L  K +  H L+M+ATPIPRTL ++
Sbjct: 367 AVGTHALFQDDVLFHDLALVIVDEQHRFGVAQRLALKNKGSDVHQLMMSATPIPRTLAMS 426

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
              D+D+S I E P  R PIKT ++   R  EV   +     +G++AYW+CP IEE +  
Sbjct: 427 FFADLDVSSIDELPPNRTPIKTKLVNNLRRSEVEGFVLNTCQKGQQAYWVCPLIEESEVL 486

Query: 499 NFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             ++V +    L        I ++HGRM   +K +VM  F +G+  +L+ATTVIEVG+DV
Sbjct: 487 QLQTVTDTLAELQAALPQLKIGLVHGRMKAAEKAAVMAEFISGSLNVLVATTVIEVGVDV 546

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            +AS+++IE+AE  GLAQLHQLRGRVGRG   S+C+LL+  PL + S  RL V+    DG
Sbjct: 547 PNASLMVIEHAERMGLAQLHQLRGRVGRGAAASTCVLLFAEPLGQISKARLKVIYENTDG 606

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           F IA +DL+ R  GE LG +QSG P    A  +    LLE AR+ A  ++   PD+ + 
Sbjct: 607 FEIARQDLEIRGPGEFLGARQSGAPMLRFADLQEDLPLLEAAREVAADLVAHRPDVVAK 665


>gi|312131452|ref|YP_003998792.1| ATP-dependent DNA helicase recg [Leadbetterella byssophila DSM
           17132]
 gi|311907998|gb|ADQ18439.1| ATP-dependent DNA helicase RecG [Leadbetterella byssophila DSM
           17132]
          Length = 697

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 234/701 (33%), Positives = 374/701 (53%), Gaps = 24/701 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
             +     +   +G+G   +  L+K +         + DLL ++P  + DR    KISE+
Sbjct: 1   MASIFDTKIEYLKGIGGPRAELLNKEL-----GIFTYGDLLEHYPFRYEDRTRFYKISEL 55

Query: 65  SEE-RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           ++      + G I        + +       +DG   + L++F +       +   G   
Sbjct: 56  TDTLPAAQLLGKIKSVELVGGKGKSRLVATFSDGVASMELVWF-QGVSYFHKILQIGANY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFK-KIIVEALSRL 182
            V GK         + HP    + S        + +Y L   L     + K   +    L
Sbjct: 115 IVYGKPSLFGGIFSIQHPEIELYKSDRPLPKYFQPIYHLTDKLRKKFIESKTFTQWFRTL 174

Query: 183 -----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
                  + E + + LL+K    S  EA+  +H PR     E     R RL ++EL   Q
Sbjct: 175 LPLVQEHIHETLPEFLLKKYKLVSKKEAYYYLHLPRSP--LEQLHANR-RLKFEELFYNQ 231

Query: 238 IALL---LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           I L+   L+RK      G   N    + +    ++PF  T +Q+  I++I  D+    +M
Sbjct: 232 IKLISLSLVRKNE--YPGQVFNKTTLLTKFYQDHLPFDLTGAQKRVIREIFGDLKSGRQM 289

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++QGDVGSGKT+VA I M  A++ G QA +MAP  ILAQQH+  +KK+    ++ + +
Sbjct: 290 NRLVQGDVGSGKTIVAFICMLMAIDGGAQACMMAPTEILAQQHFSNLKKFADALELEIRL 349

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR--L 412
           +TG+  +  R +  + +  GQ HI++GTHA+ +D +Q+  L L ++DEQHRFGV QR  L
Sbjct: 350 LTGSSTKKEREEIHQGLITGQIHILVGTHAVLEDVVQFQNLGLCVIDEQHRFGVAQRAKL 409

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
               K   PH+L+MTATPIPRTL +T  GD+DIS+I E P GRKPIKTV    +    V 
Sbjct: 410 WEKNKKLYPHMLVMTATPIPRTLAMTLYGDLDISEIDELPPGRKPIKTVHRFESSRLAVW 469

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531
             +K  L++G++ Y + P IEE ++ + +++ + + ++   F   +++I+HG+M   DKE
Sbjct: 470 GFMKEELAKGRQIYVVFPLIEESEKLDLKNLFDGYENIRAAFPEFAVSIVHGKMKPKDKE 529

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             M  FK G  ++++ATTVIEVG+DV +AS+++IE+A  FGL+QLHQLRGRVGRG E S 
Sbjct: 530 YEMQRFKKGETQIMVATTVIEVGVDVPNASVMVIESAHRFGLSQLHQLRGRVGRGAEQSY 589

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           CIL+    LS ++  R+  +  +E+GF I++ DL+ R  G++ G +QSG+    +A    
Sbjct: 590 CILMTDYKLSADTRKRMETMVESENGFYISKVDLELRGPGDLSGTQQSGLVDLKLANLAK 649

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            + +L+IAR++A  IL  DP L+    ++I++ L   +   
Sbjct: 650 DEEILKIAREEAFTILQMDPSLSMPEHKAIQMHLSRIRNKS 690


>gi|303228363|ref|ZP_07315197.1| ATP-dependent DNA helicase RecG [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516976|gb|EFL58884.1| ATP-dependent DNA helicase RecG [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 680

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 233/660 (35%), Positives = 371/660 (56%), Gaps = 15/660 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L++ +G+G      L K+            +LL Y P S+ DR     I E+       +
Sbjct: 5   LTSIKGIGPGREKQLHKL------GIDTVSNLLAYFPRSYEDRRKIYSIKELETGITAGV 58

Query: 73  TGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +   +  + + R    ++++ DGTG + ++ F +     KN + +G+++   GK + 
Sbjct: 59  VGTVVSITEKRPRPRLSILEVIITDGTGPMKIVLFNQG--YKKNFYKKGQRLYAYGKAEF 116

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
               + M  P         +    I  +Y L  G+S  + +  I         + E +  
Sbjct: 117 QYGSMQMNSPQIENLGPDAMPDTGIVPIYPLVDGVSQYVVRASIRNWFEAHHTMDEILPP 176

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           +++   +     +AF  +H P  ++  E    AR +LAY+EL   Q  L L+R + +  +
Sbjct: 177 EIMNYHASMKRYDAFKEMHFPSSSERHE---KARYQLAYEELFIMQSGLALLRNKEQCHV 233

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G  +  +G + ++   N+PF  T  QE A+ +I QDM  +  M R+LQGDVGSGKT+VA 
Sbjct: 234 GPKMEPDGTLMEQYRTNLPFQLTGDQERAVTEISQDMQDERPMQRLLQGDVGSGKTVVAT 293

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +++  AVE G QAVIMAP  ILA QH+E I ++ +N  I + ++TG+ P+  + +  E +
Sbjct: 294 LSLVKAVENGYQAVIMAPTEILATQHFEGITEFCKNLPINIALLTGSTPKKEKDRIYEEL 353

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A+G   +IIGTHAL QD +Q+  L LVI+DEQHRFGV QR  L  K   PHVL+MTATPI
Sbjct: 354 ANGTIQLIIGTHALIQDKVQFKNLGLVIIDEQHRFGVNQRAALQHKGVYPHVLIMTATPI 413

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRT+ L+  GD+ +S I E P GRKP+KT ++  +  + +       ++ G + Y +CP 
Sbjct: 414 PRTMTLSVYGDLAVSLIKEMPPGRKPVKTYVVDSSYKERLRVFFGKEMAAGHQVYVVCPL 473

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +EE ++ + ++  E F  L ++F  S  + ++HGRM+  +K+ VM +F +G  +LL++TT
Sbjct: 474 VEESEKLDLQAAEELFLELKDYFYKSFEVGLVHGRMNPKEKDEVMQAFHDGRIQLLVSTT 533

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVG++V +A+I+ IE AE FGL+QLHQLRGRVGRG+  + CIL+        S  RL 
Sbjct: 534 VIEVGVNVPNATIMCIEGAERFGLSQLHQLRGRVGRGDIQAYCILVSDSK-GDVSQERLR 592

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           ++++T+DGF +AE+DL  R  G++ G+ QSG+P   +A       +L  AR D    + +
Sbjct: 593 LMESTQDGFELAEQDLLLRGSGQLFGLAQSGLPDLRVANIIKDIDILVAARNDVLSYIRE 652


>gi|302871974|ref|YP_003840610.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574833|gb|ADL42624.1| ATP-dependent DNA helicase RecG [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 679

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 239/664 (35%), Positives = 377/664 (56%), Gaps = 17/664 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +N L   +   +GVG+       K+         +  DLL++ P  ++D     KI E+ 
Sbjct: 1   MNVLEKDIRFLKGVGENRERLFKKL------GIKKAEDLLWHIPRKYLDYSKLKKIRELC 54

Query: 66  EERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
              I +    ++      + +  +  KI + D TG +T ++F +  + +KNV  EG    
Sbjct: 55  NGEIESFVAKVAGKPVEIETKSVKIIKIPVEDSTGVVTTVWFNQ--DYIKNVLKEGEIFC 112

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP- 183
            +GKI++    I + +P +  ++   ++   I  VY+   GLS  + + I+   L ++  
Sbjct: 113 FSGKIERKGFYIEVKNPEFEKYDQHLLHTGRIVPVYNSTEGLSQKVIRNIVNNLLQQVDG 172

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            L + I   + QK +   I  A   IH P      E     R+RL ++E    Q++LLL+
Sbjct: 173 ALIDIIPPYIRQKYNLSEINFAIKNIHFPENKLSLELA---RKRLVFEEFYLLQLSLLLL 229

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++  +K  G+ I       ++  + +PF  T++Q+  + +I QD+    +M R++QGDVG
Sbjct: 230 KENIEKNEGLKIENAQSSLKEFEKLLPFELTEAQKRVLAEIAQDLESTKQMNRLIQGDVG 289

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
            GKT+VAL +  A ++AG Q  +MAP  +LA QHY   KKY  N +  V ++ G+ P+  
Sbjct: 290 CGKTVVALASAYATIKAGYQVALMAPTEVLALQHYNECKKYFGN-KFNVRLLIGSTPKKE 348

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +   L+ I HG   ++IGTHAL QD +++  L L I DEQHRFGV QR++LT+K ++P++
Sbjct: 349 KEIILKEIEHGLCKMVIGTHALIQDEVKFKNLGLAITDEQHRFGVIQRVELTKKGSSPNI 408

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL L   GD+DIS I + P GRK I T  +  +    V   +K  L EG+
Sbjct: 409 LVMTATPIPRTLSLVLYGDLDISIIDQLPPGRKKILTYAVDESFRQRVYNFIKKQLDEGR 468

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           + YWICP IEE +  N +S VE   SL E F    +I  +HG++S  +++ +++ FK+G 
Sbjct: 469 QVYWICPLIEESETLNAKSAVEFAKSLKEGFFKDYNIGCLHGKLSVKERDKILNDFKDGY 528

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTV+EVGI+V +A++++IENAE FGLAQLHQLRGRVGRGE  S CIL ++   S
Sbjct: 529 IHILVSTTVVEVGINVPNATVMVIENAERFGLAQLHQLRGRVGRGEHQSYCIL-FNQSDS 587

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + +  R+  +  +++GF IAE DLK R  G++ G KQ G+  F +A       +L+ AR 
Sbjct: 588 EIAKKRMIAITRSQNGFEIAEMDLKLRGPGDLFGTKQHGVMNFKVADIINDMDILKQARI 647

Query: 662 DAKH 665
            A+ 
Sbjct: 648 AAEE 651


>gi|228998631|ref|ZP_04158218.1| ATP-dependent DNA helicase recG [Bacillus mycoides Rock3-17]
 gi|228761099|gb|EEM10058.1| ATP-dependent DNA helicase recG [Bacillus mycoides Rock3-17]
          Length = 682

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 229/680 (33%), Positives = 378/680 (55%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G++ S  L ++             LL + P  + D      ++E+  E  VT
Sbjct: 8   PVTDVKGIGEETSELLHEM------GIHTVSHLLEHFPYRYEDY-AMKDLAEVKHEERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLKLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTISIS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGSSIEEM 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  +RK + 
Sbjct: 175 LPDGLLGRYKLLPRYEALRALHFPVGQEDL---KQARRRFVYEEFFLFQLKMQALRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G   ++  K  ++    +PF  T +Q   + +I++DM    RM R+LQGDVGSGKT
Sbjct: 232 ESSKGTKKDISMKELEEFTDALPFPLTGAQRRVVSEIIKDMQSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IA+ AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR+ 
Sbjct: 292 VVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFNMNVELLTSSVKGARRREV 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + ++ V+  ++  +++G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLERVLGFVEKEVNKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE VM+ F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLMHHYQGKFQVGLMHGRLSSQEKEDVMEKFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAV 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++  +    + +  ++R+ L
Sbjct: 651 LVDSEAFWHNEQYAALRVYL 670


>gi|299142557|ref|ZP_07035688.1| ATP-dependent DNA helicase RecG [Prevotella oris C735]
 gi|298575992|gb|EFI47867.1| ATP-dependent DNA helicase RecG [Prevotella oris C735]
          Length = 700

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 244/687 (35%), Positives = 378/687 (55%), Gaps = 23/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +    GVG K    LSK +     N   + DLL Y+P  ++DR     I E++   
Sbjct: 5   LDQDIMYLPGVGPKRKEILSKEL-----NVQTWRDLLEYYPYKYVDRSKVYAIDELNGTM 59

Query: 69  I-VTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             V I G I     F    +++       DG G + L++F R  + +   +    +  V 
Sbjct: 60  PFVQIKGKILSFEEFSNGARKKRIVAHFTDGHGVVDLVWF-RGAQYIYKTYALNTEYIVF 118

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALSR 181
           GK      R    HP         +N   ++  YS        G++    +K+    +SR
Sbjct: 119 GKPTIYGGRYQFAHPEIEKAADLQLNEMGMQPYYSTTEKMKNNGMTSRAIEKLTKTLISR 178

Query: 182 LPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           LP   + E +   +L+   F S   AF+ IH P+   + +     + RL ++EL   Q+ 
Sbjct: 179 LPEGSISETLPPFILRPHHFISREAAFHGIHYPKSLDELQRA---QVRLKFEELFYVQLN 235

Query: 240 LLLMRK-QFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +L       +K  G      G+       N + F  T +Q+  + +I  DM+   +M R+
Sbjct: 236 ILRYASDHRRKYRGYVFQHVGQNFNGFYHNNLTFELTGAQKRVMHEIRNDMASGKQMNRL 295

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL+ M  A++ G QA IMAP  ILA+QHY  IK++ +   + VE++TG
Sbjct: 296 LQGDVGSGKTLVALMTMLIAIDNGFQACIMAPTEILAEQHYATIKEFLKGIDVRVELLTG 355

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +    R++ LE +A G   I++GTHA+ +D++Q+ +L L +VDEQHRFGV QR +L  K
Sbjct: 356 IVKGKRRKQVLEALAVGDVKILVGTHAVIEDTVQFARLGLAVVDEQHRFGVAQRARLWAK 415

Query: 418 A-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           + T PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N++  +   ++
Sbjct: 416 SETPPHVLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKFDNQMTSLYNGIR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             + +G++ Y + P I+E ++++ + + + + SL E F    I+ +HG+M   +KE  M 
Sbjct: 476 QQIRQGRQVYIVFPLIKENEKNDLKDLEKGYESLLEIFPEFRISKVHGKMKPAEKEEEMR 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+
Sbjct: 536 RFVSGETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGAKQSYCILV 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDS 654
               LS+ +  R+ ++ +T DGF IAE DLK R  G++ G +QSG+     IA       
Sbjct: 596 TSYKLSEETRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQ 655

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSI 681
           L+++AR +AK I+  DP       Q +
Sbjct: 656 LVQLARDEAKKIIDNDPTCEKTEYQLL 682


>gi|86141562|ref|ZP_01060108.1| ATP-dependent DNA helicase recG [Leeuwenhoekiella blandensis
           MED217]
 gi|85832121|gb|EAQ50576.1| ATP-dependent DNA helicase recG [Leeuwenhoekiella blandensis
           MED217]
          Length = 700

 Score =  568 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 227/688 (32%), Positives = 369/688 (53%), Gaps = 23/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG   +  L   +         + DLL   P+ +ID+     IS++    
Sbjct: 5   LQTPIDYLKGVGPNRANLLRSEL-----GIHTYQDLLNLFPNRYIDKTQYYTISQLQPTS 59

Query: 69  I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V I G ++   +    + +       D TG + L++F +  + ++            G
Sbjct: 60  ADVQIIGKVTHIKTAGEGRSKRLVATFIDQTGAMELVWF-KGLKWIRESLKINVPYVAFG 118

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPT-----GLSVDLFKKIIVEALSR 181
           K+++  +   + HP             + ++ VY         G++  +   ++      
Sbjct: 119 KVQRFGSSYSIAHPDLELLEEHKKGLRIAMQPVYPSTEKLSNRGITNRVMNGLMQTLFQE 178

Query: 182 LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           +   + E + + +          EA+  IH P++    E  + A+ RL ++EL   Q+ L
Sbjct: 179 VHKSIEESLSESIRNALKLIPRREAYLNIHFPQQQ---ETLAKAQFRLKFEELFFIQLQL 235

Query: 241 LLMRKQFKKEIG-IPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L+  +  K++I        G         ++PF  T +Q+  +K+I  D+ +  +M R+L
Sbjct: 236 LVKNQLHKQKIKGYAFEAIGDYFTTFYNEHLPFELTGAQKRVVKEIRNDLGKPAQMNRLL 295

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL+ M  A++   QA +MAP  ILA QH++ I +  +   + + ++TG+
Sbjct: 296 QGDVGSGKTIVALMTMLIALDNNFQACLMAPTEILAIQHFQGISELCEKLDLKIALLTGS 355

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                RR+  + +  G  HI+IGTHAL +D +++  L L ++DEQHRFGV QR KL  K 
Sbjct: 356 SKTKERREIHQSLEDGSLHILIGTHALLEDKVKFKNLGLAVIDEQHRFGVAQRSKLWHKN 415

Query: 419 T-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH+L+MTATPIPRTL ++  GD+D+S I E P GRK IKTV    N   +V   ++ 
Sbjct: 416 ELPPHILIMTATPIPRTLAMSVYGDLDVSVIDELPPGRKAIKTVHRYDNNRLKVFGFIRD 475

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVM 534
            + +G++ Y + P I+E +  +++ +++ + S+   F      I+I+HG+M   DK+  M
Sbjct: 476 EIKKGRQIYVVYPLIQESEALDYKDLMDGYESIAREFPMPDYQISIVHGQMKPADKDYEM 535

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F NG  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG + S CIL
Sbjct: 536 NRFVNGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGADQSYCIL 595

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +    LS++S TRL  +  T DGF IAE DLK R  G+I+G +QSG+    IA     + 
Sbjct: 596 MTGHKLSEDSKTRLQTMTQTNDGFEIAEVDLKLRGPGDIMGTQQSGVLNLKIADIVKDNE 655

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIR 682
           +++IAR  A  +L +DP L       +R
Sbjct: 656 VMKIARNYASALLKEDPQLAQPENLPVR 683


>gi|225076550|ref|ZP_03719749.1| hypothetical protein NEIFLAOT_01598 [Neisseria flavescens
           NRL30031/H210]
 gi|224952113|gb|EEG33322.1| hypothetical protein NEIFLAOT_01598 [Neisseria flavescens
           NRL30031/H210]
          Length = 730

 Score =  568 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 240/666 (36%), Positives = 365/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 67  AKKLEKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 119

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK   +   M+HP  
Sbjct: 120 FKPRKQLIVQIADGSGSVLFLRFIHFYASNQKQMAIGKRIRAVGEIKHGFHGDEMIHPKI 179

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
               S  +    +  +Y    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 180 RDAESSGL-AESLTPIYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLKLPHLA 237

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 238 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGSATALGGDG 297

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q +   +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 298 TLTQALRHALPFALTDAQERVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIE 357

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   + V  ++G+  +  + +A  ++A G   I 
Sbjct: 358 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKTKLADGTVKIA 417

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D +++  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 418 VGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRTLAMSF 477

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE +   
Sbjct: 478 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEESETLQ 537

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+DV 
Sbjct: 538 LQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAEFAAGCLNVLVATTVIEVGVDVP 597

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+    DGF
Sbjct: 598 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGF 657

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A  E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 658 EIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPLLIEQNPEI--VEA 715

Query: 679 QSIRIL 684
              R L
Sbjct: 716 HLARWL 721


>gi|228992583|ref|ZP_04152510.1| ATP-dependent DNA helicase recG [Bacillus pseudomycoides DSM 12442]
 gi|228767217|gb|EEM15853.1| ATP-dependent DNA helicase recG [Bacillus pseudomycoides DSM 12442]
          Length = 685

 Score =  568 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 229/680 (33%), Positives = 378/680 (55%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G++ S  L ++             LL + P  + D      ++E+  E  VT
Sbjct: 11  PVTDVKGIGEETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHEERVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 64  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLKLDETVTITGKW 121

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 122 DQHRQTISIS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGSSIEEM 177

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  +RK + 
Sbjct: 178 LPDGLLGRYKLLPRYEALRALHFPVGQEDL---KQARRRFVYEEFFLFQLKMQALRKMER 234

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G   ++  K  ++    +PF  T +Q   + +I++DM    RM R+LQGDVGSGKT
Sbjct: 235 ESSKGTKKDISMKELEEFTDALPFPLTGAQRRVVSEIIKDMQSPYRMNRLLQGDVGSGKT 294

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IA+ AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR+ 
Sbjct: 295 VVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFNMNVELLTSSVKGARRREV 354

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 355 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 414

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + ++ V+  ++  +++G++AY 
Sbjct: 415 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLERVLGFVEKEVNKGRQAYV 474

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE VM+ F     ++L
Sbjct: 475 ICPLIEESEKLDVQNAIDLHSMLMHHYQGKFQVGLMHGRLSSQEKEDVMEKFSENKVQIL 534

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 535 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 593

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 594 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAV 653

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++  +    + +  ++R+ L
Sbjct: 654 LVDSEAFWHNEQYAALRVYL 673


>gi|313115462|ref|ZP_07800929.1| ATP-dependent DNA helicase RecG [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622229|gb|EFQ05717.1| ATP-dependent DNA helicase RecG [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 686

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 227/677 (33%), Positives = 348/677 (51%), Gaps = 20/677 (2%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P+   +GVG K +    K+            DLL ++P  +ID      I+E   +  
Sbjct: 12  DTPVRYLKGVGPKTAERFEKL------GIVTLADLLCHYPRRYIDFTKPYSIAEAPTDVE 65

Query: 70  VTITGYISQHS--SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             +   +            RR  +I   D    + + +F             G++    G
Sbjct: 66  CVVRAEVFAKPGGRILPGGRRMERITAGDDVSSLEITWFNN--PYAAQKLQLGQEYYFQG 123

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
            +     R  MV+P      ++ +     EAVY    GL+ +   K + + L    +LP+
Sbjct: 124 IVTGGMLRRQMVNPQ--VRTAEQIKASPFEAVYPQTEGLTSNAIAKCVRQLLPHAELLPD 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +  ++L K    S A+A   IH P      E    AR RL Y+ELL  Q+ +  M+ + 
Sbjct: 182 PLPPEMLAKYRLLSKADAVRAIHCPATE---EQAYAARRRLIYEELLVLQLGIGRMKNRG 238

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
               G P+ +          ++PFSPT +Q  A+ +IL DM+ +  M R+LQGDVGSGKT
Sbjct: 239 AAATGAPMQLADPSL--FWASLPFSPTGAQRRAVSEILADMAGETSMNRLLQGDVGSGKT 296

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           LVA  A+ A + AG QA ++AP  ILA QH E + +      + V ++TG M  A RR  
Sbjct: 297 LVAAAAIWACIRAGYQAALLAPTEILATQHAEGLNRMLAPFGMRVALLTGGMKAAARRTT 356

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  I + +A +++GTHA+  + +++ +L L ++DEQHRFGV+QR  L +KA  PH+L+M+
Sbjct: 357 LAAIRNDEADLVVGTHAILSEGVEFARLGLAVIDEQHRFGVRQRGMLAEKAANPHLLVMS 416

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL L   GD+DIS + E P GR P+KT  I   +  ++   L   +  G++ Y 
Sbjct: 417 ATPIPRTLGLLIYGDLDISILDELPPGRTPVKTRCITGKKRRDLYHFLDQEIGRGRQVYL 476

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP IE+  +    +V   +  + +       + ++HG++   +K +VM+ FK G    L
Sbjct: 477 VCPAIEDTPDGGLNAVKSYYEDIAKALLPERRVGLMHGKLKPKEKAAVMEDFKAGRLDAL 536

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVG+DV +AS+++IENAE +GL+ LHQLRGRVGRG   S C L+     S+N  
Sbjct: 537 VSTTVIEVGVDVPNASVMVIENAERYGLSALHQLRGRVGRGAAESWCFLV-SDNQSENVQ 595

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL  L +T DGF +A+ DL+ R  G+  G +Q G+P   IA        L  A+ +A  
Sbjct: 596 KRLKFLCSTTDGFAVAQYDLETRGPGDFFGSRQHGLPTLQIADLMNDTRTLHAAQAEAVA 655

Query: 666 ILTQDPDLTSVRGQSIR 682
           +L  DP L +     + 
Sbjct: 656 MLADDPLLEAPEHALLE 672


>gi|303230783|ref|ZP_07317530.1| ATP-dependent DNA helicase RecG [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514543|gb|EFL56538.1| ATP-dependent DNA helicase RecG [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 680

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 235/653 (35%), Positives = 368/653 (56%), Gaps = 15/653 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L++ +G+G      L K+            +LL Y P S+ DR     I E+       +
Sbjct: 5   LTSIKGIGPGREKQLHKL------GIDIVSNLLAYFPRSYEDRRKIYSIKELETGITAGV 58

Query: 73  TGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +   +  + + R    ++++ DGTG + ++ F +     KN + +G+++   GK + 
Sbjct: 59  VGTVVSITEKRPRPRLSILEVIITDGTGPMKIVLFNQG--YKKNFYKKGQRLYAYGKAEF 116

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
               + M  P         +    I  +Y L  G+S  + +  I         + E +  
Sbjct: 117 QYGSMQMNSPQIENLGPDAMPDTGIVPIYPLVDGVSQYVVRASIRNWFEAHHTMDEILPT 176

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           +++   +     +AF  +H P  ++  E    AR +LAY+EL   Q  L L+R + +  +
Sbjct: 177 EIMNYHASMKRYDAFKEMHFPSSSESHE---KARYQLAYEELFIMQSGLALLRNKEQCYV 233

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G  +  +G + ++   N+PF  T  QE A+ +I QDM  +  M R+LQGDVGSGKT+VA 
Sbjct: 234 GPKMEPDGTLMEQCRTNLPFQLTGDQERAVTEISQDMQDERPMQRLLQGDVGSGKTVVAT 293

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +++  AVE G QAVIMAP  ILA QHYE I ++ +   I + ++TG+ P+  + K  E +
Sbjct: 294 LSLVKAVENGYQAVIMAPTEILATQHYEGITEFCKTLPINIALLTGSTPKKEKDKIYEEL 353

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A+G   +IIGTHAL QD +Q+  L LVI+DEQHRFGV QR  L  K   PHVL+MTATPI
Sbjct: 354 ANGTIQLIIGTHALIQDKVQFKNLGLVIIDEQHRFGVNQRAALQHKGVYPHVLIMTATPI 413

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRT+ L+  GD+ +S I E P GRKP+KT ++  +  + +       ++ G + Y +CP 
Sbjct: 414 PRTMTLSVYGDLAVSLIKEMPPGRKPVKTYVVDSSYKERLRVFFGKEMAAGHQVYVVCPL 473

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +EE ++ + ++  E F  L ++F  S  + ++HGRM+  +K+ VM +F NG  +LL++TT
Sbjct: 474 VEESEKLDLQAAEELFLELKDYFYKSFEVGLVHGRMNPKEKDEVMQAFHNGRIQLLVSTT 533

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVG++V +A+I+ IE AE FGL+QLHQLRGRVGRG+  + CIL+        S  RL 
Sbjct: 534 VIEVGVNVPNATIMCIEGAERFGLSQLHQLRGRVGRGDIQAYCILVSDSK-GDVSQERLR 592

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           ++++T+DGF +AE+DL  R  G++ G+ QSG+P   +A       +L  AR D
Sbjct: 593 LMESTQDGFELAEQDLLLRGSGQLFGLAQSGLPDLRVANIIKDIDILVAARND 645


>gi|319649610|ref|ZP_08003766.1| ATP-dependent DNA helicase RecG [Bacillus sp. 2_A_57_CT2]
 gi|317398772|gb|EFV79454.1| ATP-dependent DNA helicase RecG [Bacillus sp. 2_A_57_CT2]
          Length = 682

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 229/689 (33%), Positives = 366/689 (53%), Gaps = 23/689 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M P++       ++  +G+G++ ++ L+++      N     DLL Y P  + D      
Sbjct: 1   MNPNY----NQSVTAVKGIGEETAVSLAEM------NINTVKDLLEYFPYRYEDYR-LKD 49

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           + EI  +  VT+ G I    S     R+  ++ +    G   +         LKN     
Sbjct: 50  LEEIKHDERVTVEGKIHSEPSLAYYGRKRSRLTVRVLVGRYLIQVVMFNQPYLKNKITLN 109

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
             +TVTGK  + +  I               +    E VY++   ++V   ++ I  A S
Sbjct: 110 ETVTVTGKWDQHRQIITAN----ELKIGSASSNKDFEPVYAVKGNITVKGIRRFIKLAFS 165

Query: 181 RL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +    + E + +  L +       +A   +H P   ++       R R  Y+E    Q+ 
Sbjct: 166 QYGNEISETLPEKYLLQYRLLDRRDAMRSLHFPANDQEL---KQGRRRFVYEEFFYFQLK 222

Query: 240 LLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +  +RK + ++  GI    +     + + ++PF+ T +Q+  + +IL DM    RM R+L
Sbjct: 223 MQALRKIEREQSKGIAQAYDLSRLMEFIDSLPFALTNAQKRVVNEILTDMKSPYRMNRLL 282

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT VA IA+ A+  A  Q  +M P  ILA+QH E +K   +   +  E++T +
Sbjct: 283 QGDVGSGKTAVAAIALFASRTADFQGALMVPTEILAEQHAESLKTMLEPFGLRCELLTSS 342

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    RR+ L+ +  G+  ++IGTHAL Q+ ++Y KL LVI DEQHRFGV QR  L +K 
Sbjct: 343 VKGKRRREILQHLKDGEIDVLIGTHALIQEEVEYNKLGLVITDEQHRFGVGQRRILREKG 402

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            +P VL MTATPIPRTL +T  G++D+S I E PAGRK I+T       +D V+  ++  
Sbjct: 403 ESPDVLFMTATPIPRTLAITVFGEMDVSIIDEMPAGRKAIETYWAKPEMLDRVLGFMEKE 462

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDS 536
           LS G++ Y ICP IEE  + + ++ ++   +L  HF     + ++HGR+   +KE+VM +
Sbjct: 463 LSAGQQVYVICPLIEESDKLDVQNAIDVHATLMHHFHGRYDVGLMHGRLHPDEKENVMKA 522

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F     ++L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG++ S C+LL 
Sbjct: 523 FSRNETQILVSTTVVEVGVNVPNATMMVIYDAERFGLAQLHQLRGRVGRGDKQSYCVLLA 582

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            P  S+    R+ ++  T DGF ++E+DL+ R  G+  G KQSG+P+F +A        L
Sbjct: 583 DPK-SEVGKERMKIMTETNDGFALSEKDLELRGPGDFFGKKQSGLPEFKVADMVHDYRAL 641

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILL 685
           E AR DA  ++       S     +R  L
Sbjct: 642 EAARNDAASLVESHEFWHSDEYLPLRNYL 670


>gi|119487921|ref|ZP_01621418.1| ATP-dependent DNA helicase RecG [Lyngbya sp. PCC 8106]
 gi|119455497|gb|EAW36635.1| ATP-dependent DNA helicase RecG [Lyngbya sp. PCC 8106]
          Length = 833

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 245/717 (34%), Positives = 397/717 (55%), Gaps = 38/717 (5%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P+  + L  PL+    VG + +  L+K+            DLL+Y+P   ID   +  I 
Sbjct: 132 PNAASSLEQPLAKV--VGPRNADRLAKL------GLYTVYDLLYYYPRDHIDYARQVAIR 183

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEM------- 112
           ++     VT+   + + + F   + +   I    L D TG + +  F+            
Sbjct: 184 DLVPGETVTLVAKVKRCNCFSSPRNKKLTILDLTLTDNTGNLKISRFFAGPRFSNAGWQN 243

Query: 113 -LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGL 166
             K  + +G  I  +G +K  K  I + +P     +        +    +  VY L  G+
Sbjct: 244 KQKYNYPQGTIIAASGLVKSNKYGITLDNPELEVLDQAGGQIDSMKIGRVVPVYPLSEGV 303

Query: 167 SVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226
             DL +K ++  L     L + + + LL       + +A   IH P    D +  + AR 
Sbjct: 304 GADLVRKAVLSVLPTTSQLQDSLPQGLLDLYQLIGVQDAIQNIHFPP---DRDCLAAARR 360

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           RL +DE    Q+ LL  R+  KK      +   GK+ Q+    +PF  T +Q+  IK+IL
Sbjct: 361 RLVFDEFFYLQLGLLQQRQSQKKATTSAVLAPTGKLIQQFDEILPFEFTNAQQRVIKEIL 420

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D+     M R++QGDVG+GKT++A++AM AA++AG QA +MAP  +LA+QHY  +  + 
Sbjct: 421 IDLQSSEPMNRLVQGDVGAGKTVLAVVAMLAAIQAGYQAALMAPTEVLAEQHYRKLVSWF 480

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
               + VE++TG+   A RR+  +++  G+  +++GTHAL QD++++++L LV++DEQHR
Sbjct: 481 NLMHLSVELLTGSTKAAKRRQIHKQLETGELPVLVGTHALIQDTVKFHRLGLVVIDEQHR 540

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGVQQR +L QK  +PHVL MTATPIPRTL LT  GD+D+S++ E P GR+PI+T I+  
Sbjct: 541 FGVQQRARLQQKGESPHVLTMTATPIPRTLALTLHGDLDVSQLDELPPGRQPIQTTILMG 600

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHG 523
            +  E  + ++  + +G++ Y + P +EE ++ + RS VE    L         I ++HG
Sbjct: 601 KQRKEAYDLMRREIVQGRQVYVVLPLVEESEKLDVRSAVEEHQKLQTKIFPEFQIGLLHG 660

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           R+S  +K+  +  F++   ++L++TTV+EVG+DV +A++++IENAE FGL+QLHQLRGRV
Sbjct: 661 RLSSAEKDEAISQFRDQKTQILVSTTVVEVGVDVPNATVMLIENAERFGLSQLHQLRGRV 720

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRGE  S C+L+     +  +  RL VL+ ++DGF IAE D++ R  G++LG +QSG+P 
Sbjct: 721 GRGEHKSFCLLMAGSS-TPEAKERLQVLEQSQDGFFIAEMDMQLRGPGQVLGTRQSGLPD 779

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           F++A       +LE+AR  A+ ++ +D  L        R  L   + N  F+ +  G
Sbjct: 780 FVLASLVEDREVLELARDAAQKVIEKDDTLN-------RWPLMKQELNRRFERMLGG 829


>gi|226953855|ref|ZP_03824319.1| ATP-dependent DNA helicase [Acinetobacter sp. ATCC 27244]
 gi|226835338|gb|EEH67721.1| ATP-dependent DNA helicase [Acinetobacter sp. ATCC 27244]
          Length = 681

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 256/684 (37%), Positives = 388/684 (56%), Gaps = 23/684 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             +   +GVG   +  L K+      +     DLLF+ P  + DR     ++++   R  
Sbjct: 2   TSVQQLQGVGAAAATLLEKL------HIFSTDDLLFHLPRDYEDRSTIIPMNQLMVGRSY 55

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G +     F   K++    LL D  G++TL  FY   + L +    G ++ + G+++
Sbjct: 56  LLEGEVRSI-DFPPGKKKSLAALLQDDFGKVTLR-FYHIYKGLTDRIQVGNRLRIFGEVR 113

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
                + + HP   +      +    + A+Y    GL+    ++ + +AL+     L E 
Sbjct: 114 VGARGLELYHPEIQVILQHTPLPKTQLTAIYPSTEGLTQPKLREYVRQALAHHSDDLAEL 173

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244
           +            + +A + IH P    +     + + PA++RL ++EL+A QI+LL  R
Sbjct: 174 LPSKYSNGY---ELKQALHYIHEPPIDANMVQLNQGSHPAQQRLIFEELVAHQISLLTRR 230

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              ++           +A+++L  +PF  T +Q+   K+ILQD+ Q+  MLR++QGDVG+
Sbjct: 231 AYIRQIAAPKFTSSKVLAKQLLEALPFQMTNAQKRVSKEILQDLKQQQPMLRLVQGDVGA 290

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA IA   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R
Sbjct: 291 GKTLVAAIAACHALEAEWQVALMAPTEILAEQHYLNFKRWFEPLGIDVAWLSGKQKGKAR 350

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP--- 421
            +A + I  G + +I+GTHALFQD++ + KL LVI+DEQHRFGV QRL L  K       
Sbjct: 351 TQAEQHIREGHSQLIVGTHALFQDNVAFSKLGLVIIDEQHRFGVDQRLALRNKGADQFTP 410

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     E
Sbjct: 411 HQLVMTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVLQRIAQNCRE 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           GK+AYW+C  +E+ +  + ++    +  + E F   ++ ++HG+M   +K++VM +FK+ 
Sbjct: 471 GKQAYWVCTLVEQSETLDAQAAEATYQEIKERFPDLNVGLVHGKMKADEKQAVMQAFKDN 530

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG   S C LLY  PL
Sbjct: 531 QSQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGATASFCALLYKTPL 590

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A 
Sbjct: 591 SQNGQERLSILRESNDGFVIAEKDLEIRGPGELLGTKQTGDMGFRVARLERDDHLLTQAH 650

Query: 661 KDAKHILTQDPDLTSVRGQSIRIL 684
             A+ IL   P      G   R L
Sbjct: 651 YVAEQILKDYP--QHAEGLLKRWL 672


>gi|42523773|ref|NP_969153.1| ATP-dependent DNA helicase RecG [Bdellovibrio bacteriovorus HD100]
 gi|39575980|emb|CAE80146.1| ATP-dependent DNA helicase RecG [Bdellovibrio bacteriovorus HD100]
          Length = 701

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 234/693 (33%), Positives = 382/693 (55%), Gaps = 13/693 (1%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG K     S+             DL  ++P ++ D+     IS +  + 
Sbjct: 11  LDTQIQFLKGVGPKLGDLFSR------KGLKTLGDLFEFYPRAYEDQRAARNISSLRPDD 64

Query: 69  IVTITGYISQHSSFQLQK--RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           IV+I   +    S  + +  R+ Y +L+ D +G+I   +F    +     F    ++ V 
Sbjct: 65  IVSIKATVVAVHSVNMGRSARKMYDVLVRDASGQIHCKYFRVPYKGYFERFKPFTEVRVV 124

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK+ + + R+   HP        +     +  +Y+   GL+     K++  A +++   P
Sbjct: 125 GKVTEYRGRLEFHHPDIKDVEPDEETQDALIPLYTEIEGLATAKIMKLVRSAFAQIEEWP 184

Query: 187 EW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLL 242
           E    K + +K +     +A   IH P   K     E+ + A++R+ +DE    ++ L  
Sbjct: 185 EEAFPKWMREKYNLIPRKDALKDIHFPDPNKAKQYSEFKTAAQKRIIFDEFFWLELYLAS 244

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +  F+KE    I   G+  + +L+++PF  T +Q+    +I  D+ + + M R++QGDV
Sbjct: 245 KKAGFQKEGAPQIRNSGEKMRALLQSLPFEMTGAQKRVFTEIKADLEKGHPMHRMVQGDV 304

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLV+ +A   A E+G Q+ +MAP  ILA+QH++  +K  +   I + ++ G    +
Sbjct: 305 GSGKTLVSFMAAIYAAESGYQSCLMAPTEILAEQHFKNARKVLEPLGIRLGLLVGKSKAS 364

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R++ L  +  G+  +IIGTHAL +D +Q+  L LVI+DEQHRFGV+QR  L  K  +PH
Sbjct: 365 ERKQLLAALGAGEIDLIIGTHALIEDEVQFANLGLVIIDEQHRFGVEQRGVLKNKGNSPH 424

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+MTATPIPRTL +T  GD+D+S I E PAGR PI+T     ++  + ++ +   + +G
Sbjct: 425 FLVMTATPIPRTLAMTVYGDLDVSIIDEMPAGRSPIQTRATFESKRPQALQFMLEQIQKG 484

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++AY + P +EE ++ + +  V  +  L E +    I ++HG+M   +K+ VMD F+   
Sbjct: 485 RQAYIVYPLVEESEKIDLKDAVSEYEKLKELYPQLKIGLLHGKMKPDEKDQVMDQFRKNE 544

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVG+DV +A+I+IIE+AE FGL+QLHQLRGRVGRGE  S CIL+    +S
Sbjct: 545 IQVLVSTTVIEVGVDVPNANIMIIEHAERFGLSQLHQLRGRVGRGEHKSFCILIMGYAVS 604

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R  +++ T DGF IAE DL+ R  GE +G KQSG+  F +A      ++L+ AR+
Sbjct: 605 EEGKARTEMMEKTTDGFKIAEFDLEMRGPGEFMGTKQSGLSGFKLANLVRDMAILQEARE 664

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
            A  +L +DP L+ V  Q ++  L       A 
Sbjct: 665 AAFEVLRKDPRLSYVENQGLKAELLREHGPAAL 697


>gi|251797726|ref|YP_003012457.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. JDR-2]
 gi|247545352|gb|ACT02371.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. JDR-2]
          Length = 684

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 239/690 (34%), Positives = 377/690 (54%), Gaps = 18/690 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            +   +GV    +    K             DLL Y P  + D     +++EI +   VT
Sbjct: 7   SVRQIKGV---SAP---KEEELHAFGVHTVADLLDYFPFRYEDYR-IRELAEIKDGEKVT 59

Query: 72  ITGYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G I  +   Q   +        +      +T ++F R    L+     GR+I +TGK 
Sbjct: 60  VQGTIRGNGILQRYGKNKSRLTCKIEVDHMLVTAVWFNR--HFLQGQLTPGREIMLTGKW 117

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEW 188
           ++ + ++ +    +   ++  V    ++ VYS+  G++    +K I +AL     ++ E 
Sbjct: 118 EQQRLQMTVSESEFADKSTGMVKSGTLQPVYSVGGGITQAWMRKTIKQALLQYGSMIEEV 177

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           +  +L+++    +  +A   IH+P + K+       R R+ Y+EL   Q+ L   R    
Sbjct: 178 LPHELVERHGLMARRDAVQRIHDPEEVKEGLEA---RRRMVYEELFLFQLKLQAYRSLTR 234

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K+  GI   V G+  +     +PF  T  Q+  + +I+ DM Q   M R+LQGDVGSGKT
Sbjct: 235 KRGDGIVHQVNGETIRNFAATLPFELTDGQKKVVNEIMSDMRQPAAMNRLLQGDVGSGKT 294

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IA+   ++AG Q  +M P  ILA+QH   ++K   +T I V ++TG++ +  RR  
Sbjct: 295 VVAAIALYCTIKAGHQGALMVPTEILAEQHLRSLQKLFADTGIEVALLTGSLTEKKRRDV 354

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  +  G   I++GTHAL QD + +  L LV+ DEQHRFGV QR  L +K   P VL MT
Sbjct: 355 LAGLQMGMIDILVGTHALIQDDVFFRSLGLVVTDEQHRFGVNQRSILRRKGMNPDVLTMT 414

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ GD+D+S I E+P GRKPIKT  +  + ++ V+  ++  + EG++AY 
Sbjct: 415 ATPIPRTLAITAFGDMDVSTIKERPHGRKPIKTYWVKHDMMERVLGFIRREVGEGRQAYV 474

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           ICP IEE  + + ++ ++ +  + + F    + ++HGR+S  +K+ VM  F     +LL+
Sbjct: 475 ICPLIEESDKLDVQNAIDLYVQMQQAFPDLKVGLLHGRLSASEKDEVMRGFGANETQLLV 534

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTV+EVG+DV +A++III +AE FGL+QLHQLRGRVGRG   S C+L+  P  S+N   
Sbjct: 535 ATTVVEVGVDVPNATLIIIMDAERFGLSQLHQLRGRVGRGAHQSFCVLVADPK-SENGRE 593

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ V+  T DGF ++  DL+ R  G+  G KQSG+P+F IA       +LE+AR DA  +
Sbjct: 594 RMKVMTETNDGFEVSRRDLELRGPGDFFGTKQSGLPEFKIADMAAEYEMLELARDDAAEL 653

Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
             +D   T+   + +R+ L   Q  +  Q 
Sbjct: 654 TGRDDFWTNPLFERMRVQLLKDQIFQGEQL 683


>gi|281423396|ref|ZP_06254309.1| ATP-dependent DNA helicase RecG [Prevotella oris F0302]
 gi|281402732|gb|EFB33563.1| ATP-dependent DNA helicase RecG [Prevotella oris F0302]
          Length = 700

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 243/687 (35%), Positives = 378/687 (55%), Gaps = 23/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +    GVG K    LSK +     N   + DLL Y+P  ++DR     I E++   
Sbjct: 5   LDQDIMYLPGVGPKRKEILSKEL-----NVQTWRDLLEYYPYKYVDRSKVYAIDELNGTM 59

Query: 69  I-VTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             V I G I     F    +++       DG G + L++F R  + +   +    +  V 
Sbjct: 60  PFVQIKGKILSFEEFSNGARKKRIVAHFTDGHGVVDLVWF-RGAQYIYKTYTLNTEYIVF 118

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALSR 181
           GK      R    HP         +N   ++  YS        G++    +K+    +SR
Sbjct: 119 GKPTIYGGRYQFAHPEIEKAADLQLNEMGMQPYYSTTEKMKNNGMTSRAIEKLTKTLISR 178

Query: 182 LPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           LP   + E +   +L+   F S   AF+ IH P+   + +     + RL ++EL   Q+ 
Sbjct: 179 LPEGSISETLPPFILRPHHFISREAAFHGIHYPKSLDELQRA---QVRLKFEELFYVQLN 235

Query: 240 LLLMRK-QFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +L       +K  G      G+       N + F  T +Q+  + +I  DM+   +M R+
Sbjct: 236 ILRYASDHRRKYRGYVFQHVGQNFNDFYHNNLTFELTGAQKRVMHEIRNDMASGKQMNRL 295

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL+ M  A++ G QA IMAP  ILA+QHY  IK++ +   + VE++TG
Sbjct: 296 LQGDVGSGKTLVALMTMLIAIDNGFQACIMAPTEILAEQHYATIKEFLKGIDVRVELLTG 355

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +    R++ LE +A G   I++GTHA+ +D++Q+ +L L +VDEQHRFGV QR +L  K
Sbjct: 356 IVKGKRRKQVLEALAVGDVKILVGTHAVIEDTVQFARLGLAVVDEQHRFGVAQRARLWAK 415

Query: 418 A-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           + T PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N++  +   ++
Sbjct: 416 SETPPHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKFDNQMTSLYNGIR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             + +G++ Y + P I+E ++++ + + + + SL E F    I+ +HG+M   +KE  M 
Sbjct: 476 QQIRQGRQVYIVFPLIKENEKNDLKDLEKGYESLLEIFPEFRISKVHGKMKPAEKEEEMR 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+
Sbjct: 536 RFVSGETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGAKQSYCILV 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDS 654
               LS+ +  R+ ++ +T DGF IAE DLK R  G++ G +QSG+     IA       
Sbjct: 596 TGYKLSEETRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFNLKIADIARDGQ 655

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSI 681
           L+++AR +AK I+  DP       Q +
Sbjct: 656 LVQLARDEAKKIIDNDPTCEKTEYQLL 682


>gi|33152902|ref|NP_874255.1| ATP-dependent DNA helicase RecG [Haemophilus ducreyi 35000HP]
 gi|33149127|gb|AAP96644.1| ATP-dependent DNA helicase RecG [Haemophilus ducreyi 35000HP]
          Length = 697

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 262/702 (37%), Positives = 388/702 (55%), Gaps = 32/702 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    LN +  PL +  GVG   +  L ++            DLLF+ P  + DR     
Sbjct: 1   MEKQLLNDI--PLISLAGVGTAIAEKLHRLA------IYNVQDLLFHLPIRYEDRTRITA 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++     VTI G + Q +  +  +R    ++L+DGT +I L FF     M KN F  G
Sbjct: 53  IADVRPAHFVTIEGQV-QLTEVEYSRRAILAVVLSDGTSKIMLKFFNFNAGM-KNGFAVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G+IK+ +    + HP Y  I HN        +  +Y+   GL  +  +K+  +A
Sbjct: 111 VRVKAFGEIKRGRFMAEIHHPEYQIIRHNQPLTLAESLTPIYTTTEGLKQNSLRKLTEQA 170

Query: 179 LSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDE 232
           L+ L  +   E +       +   ++ EA  ++H P      E       PA++RL ++E
Sbjct: 171 LALLNKIQIAELLPAQYNPYQ--YNLTEALQLLHCPPPNISAETLAQGEHPAQKRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   K+    P++ + ++  + L N+ F PT +Q     +I  D++Q  
Sbjct: 229 LLAHNLAMQQLRLGVKQLYATPLHYQTELKTRFLANLAFQPTPAQTRVTAEIENDLAQAV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A++ G Q  +MAP  ILA+QH     ++ +   I V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHATNFTQWLKPFDINV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R   L  I  G+  +IIGTHALFQ+S+ ++ L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKIKGKARTAQLTAIEQGEVQMIIGTHALFQESVAFHDLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT--------APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            L  K           PH L+MTATPIPRTL +T   D+D S I + P GR PIKT++I 
Sbjct: 409 TLRAKGAKTINGQEIYPHQLIMTATPIPRTLAMTVYADLDTSLIDQLPPGRTPIKTIVIA 468

Query: 465 INRIDEVIERLKVVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522
             R  EV++R+     +EG++AYW+C  I+E +    ++       L        I ++H
Sbjct: 469 EERRAEVVQRVYHACKNEGRQAYWVCTLIDESEVLEAQAAAAIAEDLQGALPDLRIGLVH 528

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GRM   +K+++M +FK  T  LL+ATTVIEVG+DV +AS++IIEN+E  GLAQLHQLRGR
Sbjct: 529 GRMKPQEKQTIMAAFKAATLDLLVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGR 588

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG   S C+L+Y PPL K S  RL V+++++DGF IAE+DL+ R  GEILG KQ+GM 
Sbjct: 589 VGRGATASHCVLMYKPPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQTGMA 648

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           +F +A       L+ + +  AK I+++ P L        R L
Sbjct: 649 EFKVANLMRDRKLIPLVQHSAKQIISEHPALA--EALIARWL 688


>gi|325105500|ref|YP_004275154.1| ATP-dependent DNA helicase RecG [Pedobacter saltans DSM 12145]
 gi|324974348|gb|ADY53332.1| ATP-dependent DNA helicase RecG [Pedobacter saltans DSM 12145]
          Length = 699

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 234/691 (33%), Positives = 369/691 (53%), Gaps = 24/691 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +     P+   +GVG + +  L K I         + DLL Y+P  +ID+    KI+EI 
Sbjct: 1   MQIFNTPIEYLKGVGPQRAEVLKKEI-----GVFTYQDLLHYYPFRYIDKTRYYKINEIG 55

Query: 66  EE-RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            +  +V I   +        ++ +     + D TGE+ L++F +  + ++          
Sbjct: 56  FDFPLVQILVRLKSFEVIGEKQSKRLVARVVDETGELELVWF-KGLKWIEKTLKINHLYV 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSV-----DLFKKIIVE 177
           V GK      +  M HP     + +        ++ VYS    L          +K++  
Sbjct: 115 VFGKPTFFNGKPQMAHPEMELFSKESKERGNLSLQPVYSSTEKLKQFSLDSKGIQKLMSN 174

Query: 178 ALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            L      + E +   +L+K    S  +A   IH P  +      S A+  L ++EL   
Sbjct: 175 LLDTVFSEIEEVLPSYILEKYKLLSRRDALLQIHFPTNST---VLSRAQATLKFEELFFI 231

Query: 237 QIALLLMRK-QFKKEIGIPINVEGKIAQKILRNI-PFSPTKSQESAIKDILQDMSQKNRM 294
           Q+ LL ++  +  K  G      G        N+ PF  T +Q+  +K+I  D  +  +M
Sbjct: 232 QLKLLKIKHLRTLKFKGNVFATVGNKFNYFYENLLPFQLTGAQKRVLKEIRFDSQKGIQM 291

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++QGDVGSGKT+VAL++M  A++ G QA +MAP  ILA QHY  IK    +  + + +
Sbjct: 292 NRLVQGDVGSGKTVVALMSMLLAIDNGFQACMMAPTEILATQHYASIKSMLPDDFVNIAL 351

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+  +  R+K LE +  G  +I++GTHAL ++++ +  L L ++DEQHRFGV+QR KL
Sbjct: 352 LTGSTKKKDRKKILEDLVIGTLNILVGTHALIEETVVFKHLGLAVIDEQHRFGVEQRAKL 411

Query: 415 -TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             +    PHVL+MTATPIPRTL ++  GD+D+S I E PAGRKPI+T+ +  N+   +  
Sbjct: 412 WKKNLIPPHVLVMTATPIPRTLAMSLYGDLDVSVINELPAGRKPIQTIHLYENQRLRMFG 471

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDK 530
            ++  +++G++ Y + P I+E  + + +++ +    L   F      I+I+HG++   +K
Sbjct: 472 YMRREIAKGRQVYVVYPLIQESAKLDLKNLQDGIEVLSREFPLPQYKISIVHGQLKPDEK 531

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E  M  F  G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S
Sbjct: 532 EFEMQRFIKGQTQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGSEQS 591

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            CIL+    LSK    RL  +  T DGF I+E DL+ R  G+I G +QSG+    +A   
Sbjct: 592 FCILMSKDKLSKEGKVRLETMVKTNDGFEISEVDLQLRGPGDIEGTQQSGILDLKLADLT 651

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
              ++L  ARK    I+  DP+L +   Q +
Sbjct: 652 QDQNILHEARKTVLEIMEADPELQNAEHQIL 682


>gi|291571510|dbj|BAI93782.1| ATP-dependent DNA helicase RecG [Arthrospira platensis NIES-39]
          Length = 822

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 255/717 (35%), Positives = 402/717 (56%), Gaps = 38/717 (5%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P  L  L   L     VG + S  L+++            DLL+Y+P   ID   +  I 
Sbjct: 121 PPKLPELDQGLKEL--VGPRNSDLLARL------GIYTIYDLLYYYPRDHIDYARQVPIK 172

Query: 63  EISEERIVTITGYISQHSSFQLQKRR---PYKILLNDGTGEITLLFFYRKTEM------- 112
           E+     VTI   + + + F   K R     ++++ D TG++ +  FY            
Sbjct: 173 ELEPGETVTIVAEVKRCNCFSSPKNRHLTILELIVKDRTGQLKISRFYAGNRYSNKGWQH 232

Query: 113 -LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-----FPLIEAVYSLPTGL 166
             K  +  G  I  +G +KK K  I + +P     +  D +        +  VY L  G+
Sbjct: 233 KQKYNYPPGAIIAASGLVKKNKYGITLDNPELEILDRADSHAASMKIGRVLPVYPLSEGI 292

Query: 167 SVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226
             DL +K ++ AL     LPE +   L +K     I++A   IH P      +W + AR 
Sbjct: 293 GADLVRKAVLAALPAANKLPESLPPKLREKYQLIEISDAITNIHFPPNR---DWLASARR 349

Query: 227 RLAYDELLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           RL +DE    QI LL  R+  K       +  +G++ ++  + +PF  TK+Q+  I +IL
Sbjct: 350 RLVFDEFFYLQIGLLQRRQVSKTNEKSAALLPQGELIEQFYKMLPFELTKAQKRVIGEIL 409

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D++ +  M R++QGDVG+GKT+VA++AM AA++AG Q  +MAP  +LA+QHY+ +  + 
Sbjct: 410 TDLNSEEPMNRLIQGDVGAGKTVVAVVAMLAAIQAGYQTALMAPTEVLAEQHYQKLVGWL 469

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
               + VE++TG+   A RR+   ++  G+  +++GTHAL QD + ++KL LV++DEQHR
Sbjct: 470 NLMHLPVELLTGSTKTAKRRQIHAQLQTGELPVLVGTHALIQDPVNFHKLGLVVIDEQHR 529

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV QR KL QK  +PHVL MTATPIPRTL LT  GD+D+S++ E P GR+PI+T ++  
Sbjct: 530 FGVHQRAKLQQKGESPHVLTMTATPIPRTLSLTLHGDLDVSQLDELPPGRQPIQTTMLSG 589

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHG 523
            +  E  + +   +++G++ Y + P +EE ++ + RS VE    L        +IA++HG
Sbjct: 590 RKRQEAYDLISREVAQGRQVYVVLPLVEESEKLDVRSAVEEHQKLQTKIFPELAIALLHG 649

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           RMS  +KE+ +  F+ G   +L++TTV+EVG+DV +A++++IENAE FGL+QLHQLRGRV
Sbjct: 650 RMSSQEKEAAIAKFREGETNILVSTTVVEVGVDVPNATVMLIENAERFGLSQLHQLRGRV 709

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG   S C+L+     S  +  RL VL+ ++DGF IAE D++ R  G++LG +QSG+P 
Sbjct: 710 GRGAHKSYCLLMSGSS-SPEAKQRLQVLEQSQDGFFIAEMDMELRGPGQVLGTRQSGLPD 768

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           F +A       +LE+AR+ A+ ++ +D  L        R    + ++N  +Q +  G
Sbjct: 769 FALASLVEDREVLELAREAAQKVIQKDYTLE-------RWPAMVAEWNRRYQKMMGG 818


>gi|229006131|ref|ZP_04163819.1| ATP-dependent DNA helicase recG [Bacillus mycoides Rock1-4]
 gi|228755207|gb|EEM04564.1| ATP-dependent DNA helicase recG [Bacillus mycoides Rock1-4]
          Length = 685

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 229/680 (33%), Positives = 378/680 (55%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G++ S  L ++             LL + P  + D      ++E+  E  VT
Sbjct: 11  PVTDVKGIGEETSELLHEM------GIHTVSHLLEHFPYRYEDY-AMKDLAEVKHEERVT 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 64  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLKLDETVTITGKW 121

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 122 DQHRQTISIS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGSSIEEM 177

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  +RK + 
Sbjct: 178 LPDGLLGRYKLLPRYEALRALHFPVGQEDL---KQARRRFVYEEFFLFQLKMQALRKMER 234

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G   ++  K  ++    +PF  T +Q   + +I++DM    RM R+LQGDVGSGKT
Sbjct: 235 ESSKGTKKDISMKELEEFTDALPFPLTGAQRRVVSEIIKDMQSPYRMNRLLQGDVGSGKT 294

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IA+ AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR+ 
Sbjct: 295 VVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFNMNVELLTSSVKGARRREV 354

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 355 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 414

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + ++ V+  ++  +++G++AY 
Sbjct: 415 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLERVLGFVEKEVNKGRQAYV 474

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE VM+ F     ++L
Sbjct: 475 ICPLIEESEKLDVQNAIDLHSMLIHHYQGKFQVGLMHGRLSSQEKEDVMEKFSENKVQIL 534

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 535 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 593

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 594 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAV 653

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++  +    + +  ++R+ L
Sbjct: 654 LVDSEAFWHNEQYAALRVYL 673


>gi|296283913|ref|ZP_06861911.1| DNA helicase [Citromicrobium bathyomarinum JL354]
          Length = 687

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 283/703 (40%), Positives = 426/703 (60%), Gaps = 19/703 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA + T  GVG K    L K+        TR  D+ ++ P  F+ R     
Sbjct: 1   MRPEILNPLFAEVDTLDGVGPKLKKPLEKLRC------TRVRDIAYHWPDRFVTRRPVET 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFE 119
           + E  E   + I   +++H S    +R PY++L  D  G  + L FF R +   K     
Sbjct: 55  LDEAGEGEQIIIALTVTEHRS-GASRRAPYRVLATDSAGNVLALTFFGRASYTAKKQLPV 113

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G K  V GK+++  + + MVHP ++          + E VYSL  GL+      +  +AL
Sbjct: 114 GEKRRVAGKLERYGDMLQMVHPDHVMKLDDAGLGQMREPVYSLAEGLTQPRMASLAAQAL 173

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            +LP LPEWIE  +L ++ +P+  EA   +H    A+D E    A++RLAYDELLA  +A
Sbjct: 174 EKLPDLPEWIEPGMLAQQKWPAWGEALRSVH----ARDDE---TAKDRLAYDELLANALA 226

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L++   +++ G P+  +G +  K+   +PF  T +QE +I++I  D++Q   MLR+LQ
Sbjct: 227 LQLVKADNRRKRGRPLAGDGHLRDKL--QLPFPLTGAQERSIREIEGDLAQDAPMLRLLQ 284

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG+GKT+VAL AM  AVEAG QA ++AP  ILA+QH+E +++  + T + V ++TG  
Sbjct: 285 GDVGAGKTVVALHAMLVAVEAGAQAALLAPTEILARQHFETLREMARPTGVEVALLTGRD 344

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKA 418
               R   L  +  G   I++GTHA+FQ+++QY  L LV+VDEQHRFGV QRL++  +  
Sbjct: 345 KGRARESILMGLMDGSIQIVVGTHAIFQEAVQYRDLGLVVVDEQHRFGVSQRLQMAGKGK 404

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L MTATPIPRTL L + G++++S++ E P GR+ I T ++ ++R+ EV+E +   
Sbjct: 405 RPPHTLSMTATPIPRTLTLANYGEMEVSRLDELPPGRQAIDTRVVGMDRLPEVVEAVGRH 464

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           L+ G++AYW+CP + +++     +  +R+ +L   F   ++ ++HG++    K++ M  F
Sbjct: 465 LASGQQAYWVCPMVRDEEGMEKAAAEQRYAALKARFDDDAVVMVHGQLDPEVKDAAMARF 524

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G  KLL+ATTVIEVG+DV  +++I+IE AE FGLAQLHQLRGRVGRG E S C+LL  
Sbjct: 525 ASGQAKLLVATTVIEVGVDVPASTLIVIEQAESFGLAQLHQLRGRVGRGSEKSVCLLLRG 584

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             LS+    RL++++ T+DGF IAEEDL+ R  GE+LG +QSG   F IA  +     L+
Sbjct: 585 NQLSETGQRRLALMRETQDGFRIAEEDLELRGGGELLGTRQSGDTPFRIATLDQMQRFLD 644

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            A  DAK ++ +D  L   RG++ R+LLYL + +   + +R G
Sbjct: 645 PATADAKLLMDRDAGLEGERGEAARVLLYLMERDMGVRTLRGG 687


>gi|118479077|ref|YP_896228.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis str. Al
           Hakam]
 gi|301055346|ref|YP_003793557.1| ATP-dependent DNA helicase [Bacillus anthracis CI]
 gi|118418302|gb|ABK86721.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis str. Al
           Hakam]
 gi|300377515|gb|ADK06419.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 685

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 230/693 (33%), Positives = 378/693 (54%), Gaps = 26/693 (3%)

Query: 1   MRPSFLNPL-FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP 59
           MR   LN +   P++  +G+G + S  L ++             LL + P  + D     
Sbjct: 1   MR--ILNEVVQVPVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMK 51

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVF 117
            ++E+  +  VT+ G +      Q   ++  ++ +    G   IT + F R     K   
Sbjct: 52  DLAEVKHDERVTVEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKL 109

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
                +T+TGK  + +  I +       H    V    +E VYS+   L+V   ++ I +
Sbjct: 110 NLDETVTITGKWDQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQ 165

Query: 178 ALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL      + E +   LL +       EA   +H P   +D      AR R  Y+E    
Sbjct: 166 ALKEYGDSIVEVLPDGLLSRYKLLPRYEALRALHFPTGQEDL---KQARRRFVYEEFFLF 222

Query: 237 QIALL-LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ +  L + + +   G    +  +  Q+ +  +PF  T +Q   + +I++DM+   RM 
Sbjct: 223 QLKMQTLRKMERENSKGTKKEIPSEELQEFIDALPFPLTGAQRRVVDEIMKDMTSPYRMN 282

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT+VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++
Sbjct: 283 RLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELL 342

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           T ++    RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L 
Sbjct: 343 TSSVKGVRRREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLR 402

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K  +P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  +
Sbjct: 403 EKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFV 462

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533
           +  +++G++AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +
Sbjct: 463 EKEINKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEI 522

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F     ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+
Sbjct: 523 MGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCL 582

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+  P  S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A      
Sbjct: 583 LIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDY 641

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             LE AR+DA  ++  +    + +  S+R  L 
Sbjct: 642 RALETARQDAALLVDSEAFWHNDQYASLRTYLD 674


>gi|239616417|ref|YP_002939739.1| ATP-dependent DNA helicase RecG [Kosmotoga olearia TBF 19.5.1]
 gi|239505248|gb|ACR78735.1| ATP-dependent DNA helicase RecG [Kosmotoga olearia TBF 19.5.1]
          Length = 787

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 241/703 (34%), Positives = 396/703 (56%), Gaps = 22/703 (3%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P  ++ L   +   +GVG++ +  L K+            DLL++ P  + DR     +S
Sbjct: 102 PVKVSSLNFDIKYAKGVGERRAKILKKL------GIETVKDLLWWLPRDYEDRRRIVPLS 155

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            I  +R VTI   +   S  ++++      +++DG G+I L +F +  E + +   + R+
Sbjct: 156 SIVADRKVTIRAKLQNFSVKKVKEYVIISAVVSDGFGQIILKWFNQ--EYITDRLIKERE 213

Query: 123 ITVTGKIKKL-KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
             +TG  KK       M  P       +      I  +YSL  G+S  + +KI+ + ++ 
Sbjct: 214 YLITGIPKKTPFGPYEMNSPEIEEITGRVPRE--ILPLYSLSAGISQKVMRKIVRKNITN 271

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           + +L E+I  +++++++      A   +H P+   +      +R RLAY+EL   ++A+L
Sbjct: 272 VRLLKEFIPAEVIKERNLLPRHHAMYTVHFPKSLYEL---KESRRRLAYEELFLFEVAVL 328

Query: 242 LMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             R++ K   G I  ++ GK+A++ + ++ F  T  Q  A ++I +DM     M R+LQG
Sbjct: 329 YNREKLKTTKGGISKSISGKLAERFIDSLNFVLTGDQMRAFEEIREDMKAPTPMNRLLQG 388

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A+    EAG Q+ +M P  +LA Q ++ + K  +   I VE++ G+  
Sbjct: 389 DVGSGKTVVAELAIIDNFEAGYQSAMMVPTTVLATQQHQKLVKDLEPLGIKVELLVGSQK 448

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           ++ + +  +RIA G+  +++GTHAL Q+++++  L LVI+DEQHRFGV+QR  L  K   
Sbjct: 449 KSQQEEIKKRIAIGEVDVVVGTHALIQENVKFKDLGLVIIDEQHRFGVKQREALMNKGAL 508

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              L+MTATPIPRTL LT+ GD+DIS ITE P GR PI+T++I   R+ E+   ++  ++
Sbjct: 509 VDTLVMTATPIPRTLALTAYGDLDISTITEMPPGRAPIRTMLISEKRLPELYAFIRDEVN 568

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFK 538
            G +A++I P IEE ++ + ++  +    L +     I +  +HGRMSD +K  +M  FK
Sbjct: 569 HGHQAFFIYPLIEESEQMDLKAATDEAERLQKEVFPDIGVELLHGRMSDEEKNRIMHRFK 628

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +L++T+V+EVGID+  A++++IE+ E FGLAQLHQLRGRVGR    S C+L+ + 
Sbjct: 629 NKEAMILVSTSVVEVGIDIPTATVMVIEHPERFGLAQLHQLRGRVGRSSLKSYCMLVLNS 688

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            +S  +  RL     T++GF +AE DL  R  GE +G +Q G+P FL+A       LL +
Sbjct: 689 NISGEALDRLRKFAGTQNGFKLAEIDLSLRGPGEFMGTRQHGLPDFLVADIVKDSELLIM 748

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQY-NEAFQFIRAG 700
           AR DA  +L +DP+L        RI+  + +   E    I  G
Sbjct: 749 ARNDAMELLKRDPNLEKHN----RIIEEIKERFGENISLIEVG 787


>gi|125625276|ref|YP_001033759.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124494084|emb|CAL99085.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300072086|gb|ADJ61486.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 666

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 238/675 (35%), Positives = 372/675 (55%), Gaps = 32/675 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG K      K+            DLL Y P  + D   R  + E+++  
Sbjct: 3   LTDSVQFLKGVGPKSVENFHKL------GIFTVQDLLLYFPFRYEDFASR-SVFELTDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             TI G +   ++ Q    KR      + +G   + + FF +    L +    G++I V 
Sbjct: 56  KATIIGTVVTPANVQYYGFKRNRLSFKIKEGEAVVAVSFFNQ--PYLADKVEVGKEIAVY 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPV 184
           GK ++ K +++ +    +     D     +E VY L  G+      K+I +      L  
Sbjct: 114 GKWEQTKQQLMGMK---VVAQVDDG----LEPVYHLTAGMKQSQLVKVIHQVFESGLLSE 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE + + L++K    +  EA   +H P   +D      A  R+ ++EL   Q+ L  ++
Sbjct: 167 LPENLPEFLIEKYRLMNRQEAVLAMHFP---EDMAAHKQALRRVKFEELFMFQLKLQALK 223

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K    G+ +  E +   K + ++PF  T  Q  A+ +IL DM     M R+LQGDVG
Sbjct: 224 NKEKSGRAGLQVIFEQEEIDKKISDLPFELTGGQSRALTEILDDMKSPYHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA ++M AA  A  QA IM P  ILA+QH+  ++      QI   ++   +  A 
Sbjct: 284 SGKTVVASLSMYAACLANFQAAIMVPTEILARQHFANLQALFPELQI--SLLVSGLKAAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  +A G  H+++GTHAL Q+ + +Y L LVI DEQHRFGV QR  L +K   P V
Sbjct: 342 RREILADLASGHTHMVVGTHALIQEGVDFYNLGLVITDEQHRFGVNQRKILREKGQNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I E P GR+PI T  +   +  EV+  +K  ++   
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDELPKGRQPITTRWVKHEQFSEVLSWVKGEVANDS 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++    F  L+++F   + I ++HG+M + +K+ +M  FK   
Sbjct: 462 QVYFISPLIEESESLDLKNAEALFAELNDYFGLFAKIGLLHGKMKNDEKDQIMQEFKAKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG+DV +A+I++I +A+ FGL+QLHQLRGRVGRG + S  IL+ +P  S
Sbjct: 522 LDVLVSTTVIEVGVDVPNATIMVIMDADRFGLSQLHQLRGRVGRGTKKSYAILVANPK-S 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R+ ++  T++GF++AEEDLK R  GEI G++QSG+P+F+ A      ++LE+AR+
Sbjct: 581 DSGKQRMKIMTETQNGFVLAEEDLKMRGSGEIFGLRQSGLPEFIAADLVNDYNILEVARQ 640

Query: 662 DAKHIL---TQDPDL 673
           +A  I     + PDL
Sbjct: 641 EAVEIFKKADEFPDL 655


>gi|229019051|ref|ZP_04175891.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1273]
 gi|229025297|ref|ZP_04181716.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1272]
 gi|228735988|gb|EEL86564.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1272]
 gi|228742253|gb|EEL92413.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1273]
          Length = 682

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 228/681 (33%), Positives = 371/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLKLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPAVRQQEVEPVYSVKGKLTVKQVRRFIAQALKEYGDSIIEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLSRYKLLPRYEALKALHFPVGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +     Q+    +PF  T +Q   + +I++DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEISSVELQEFTDALPFPLTGAQSRVVDEIMKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IA+  A  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR+ 
Sbjct: 292 VVAAIALYGAKLAHYQGAMMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGARRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L R+  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LARLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAI 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  S+R  L 
Sbjct: 651 LVDSEAFWHNDQYASLRTYLD 671


>gi|294651650|ref|ZP_06728954.1| ATP-dependent DNA helicase RecG [Acinetobacter haemolyticus ATCC
           19194]
 gi|292822499|gb|EFF81398.1| ATP-dependent DNA helicase RecG [Acinetobacter haemolyticus ATCC
           19194]
          Length = 681

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 256/684 (37%), Positives = 389/684 (56%), Gaps = 23/684 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             +   +GVG   +  L K+      +     DLLF+ P  + DR     ++++   R  
Sbjct: 2   TSVQQLQGVGAAAATLLEKL------HIFSTDDLLFHLPRDYEDRSTIIPMNQLMVGRSY 55

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G +     F   K++    LL D  G++TL  FY   + L +    G ++ + G+++
Sbjct: 56  LLEGEVRSI-DFPPGKKKSLAALLQDDFGKVTLR-FYHIYKGLTDRIQVGNRLRIFGEVR 113

Query: 131 KLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
                + + HP   +      +    + A+Y    GL+    ++ + +AL+     L E 
Sbjct: 114 VGARGLELYHPEIQVILQHTPLPKTQLTAIYPSTEGLTQPKLREYVRQALAHHSDDLAEL 173

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244
           +            + +A + IH P    +     + + PA++RL ++EL+A QI+LL  R
Sbjct: 174 LPSKYSNGY---ELKQALHYIHEPPIDANMLQLNQGSHPAQQRLIFEELVAHQISLLTRR 230

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              ++           +A+++L ++PF  T +Q+   K+ILQD+ Q+  MLR++QGDVG+
Sbjct: 231 AYIRQIAAPQFTSSKVLAKQLLESLPFQMTNAQKRVSKEILQDLKQQQPMLRLVQGDVGA 290

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA IA   A+EA  Q  +MAP  ILA+QHY   K++ +   I V  ++G      R
Sbjct: 291 GKTLVAAIAACHALEAEWQVALMAPTEILAEQHYLNFKRWFEPLGIDVAWLSGKQKGKAR 350

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP--- 421
            +A + I  G + +I+GTHALFQD++ + KL LVI+DEQHRFGV QRL L  K       
Sbjct: 351 TQAEQHIREGHSQLIVGTHALFQDNVAFSKLGLVIIDEQHRFGVDQRLALRNKGADQFTP 410

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRTL +++ GD+D S I E P GR PI+TV IP++R +EV++R+     E
Sbjct: 411 HQLVMTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVLQRIAQNCRE 470

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           GK+AYW+C  +E+ +  + ++    +  + E F   ++ ++HG+M   +K++VM +FK+ 
Sbjct: 471 GKQAYWVCTLVEQSETLDAQAAEATYQEIKERFPDLNVGLVHGKMKADEKQAVMQAFKDN 530

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LLIATTVIEVG+DV +ASI++IENAE  GL+QLHQLRGRVGRG   S C LLY  PL
Sbjct: 531 QLQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGATASFCALLYKTPL 590

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+N   RLS+L+ + DGF+IAE+DL+ R  GE+LG KQ+G   F +A+ E  D LL  A 
Sbjct: 591 SQNGQERLSILRESNDGFVIAEKDLEIRGPGELLGTKQTGDMGFRVARLERDDHLLTQAH 650

Query: 661 KDAKHILTQDPDLTSVRGQSIRIL 684
             A+ IL   P      G   R L
Sbjct: 651 YVAEQILKDYP--QHAEGLLKRWL 672


>gi|329963080|ref|ZP_08300860.1| ATP-dependent DNA helicase RecG [Bacteroides fluxus YIT 12057]
 gi|328529121|gb|EGF56051.1| ATP-dependent DNA helicase RecG [Bacteroides fluxus YIT 12057]
          Length = 698

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 237/689 (34%), Positives = 378/689 (54%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +           DLL+Y P  ++DR     I EI
Sbjct: 1   MFDLATRDIKYLSGVGPQRASVLNKEL-----GIYSLHDLLYYFPYKYVDRSRIYSIREI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +    ++R      +DGTG + L++F +  + L   +   ++ 
Sbjct: 56  DGTMPYIQLKGEILGFETAGEGRQRRLIAHFSDGTGIVDLVWF-QGIKYLVGKYKVHQEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEA 178
            V GK      RI + HP     +   ++   ++  YS       + L+    +K++   
Sbjct: 115 IVFGKPTAFNGRINIAHPDIDLASELKLSSMGMQPYYSTTDKMKRSSLNSHAIEKMMSTV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + +L   L E +   +L +     + EA   IH P  +   +    A+ RL ++EL   Q
Sbjct: 175 IQQLSEPLSETLSAAILNEHHLMPLTEALTHIHFPVNS---DLLRKAQYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + +K  G      G+I      RN+PF  T +Q+  +K+I +D+    +M 
Sbjct: 232 LNILRYAKDRQRKYRGYIFEKVGEIFNTFYSRNLPFELTNAQKRVLKEIRRDVGSGKQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE I++      + VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLMALDNGFQACMMAPTEILANQHYETIRELLYGMDVRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G  HI+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L 
Sbjct: 352 TGSIKGKRREAILAGLLTGDIHILIGTHAVIEDTVNFASLGLVVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   
Sbjct: 412 TKNVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRRESLYRS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  +SEG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ 
Sbjct: 472 VRKQISEGRQVYIVYPLIKESEKIDLKNLEEGYLHVCEEFPECKVCKVHGKMKPAEKDAQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F  G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CI
Sbjct: 532 MQQFVAGEAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+    L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTGYKLAEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADVVRD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R+ A+ ++  DP+      + +
Sbjct: 652 GQLLQYVREVAQKVIDVDPNGILPENEIL 680


>gi|312863296|ref|ZP_07723534.1| ATP-dependent DNA helicase RecG [Streptococcus vestibularis F0396]
 gi|311100832|gb|EFQ59037.1| ATP-dependent DNA helicase RecG [Streptococcus vestibularis F0396]
          Length = 676

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 238/691 (34%), Positives = 385/691 (55%), Gaps = 31/691 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  +G G K +   +K+      +     DLL Y P  + D      I E+ +  
Sbjct: 8   LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYEDF-KSKSIFELMDGE 60

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      +  G   I + FF +    L +    G ++ + 
Sbjct: 61  KAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAISFFNQ--PYLVDKIEMGAEVAIF 118

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPV 184
           GK  + K+ +  +    +    +D     ++ VY +  G+S     K I  A     L +
Sbjct: 119 GKWDQKKSAVTGMK---VLAQVEDD----MQPVYHVTQGVSQAQLIKAIKAAFDSGALNL 171

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + L+ K       EA + +H P   KD      A  R  ++EL   Q+ L +++
Sbjct: 172 LEESLPQVLMDKYRLMGRQEAVHAMHFP---KDLAEYKQALRRTKFEELFYFQMNLQVLK 228

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E   + I  +    +  +  +PF  T++Q+ ++ +IL DM     M R+LQGDVG
Sbjct: 229 AENKSETNGLAIAYDEAKIKAKIAELPFPLTEAQQLSLSEILADMKSGAHMNRLLQGDVG 288

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A +AM  A  AG Q+ +M P  ILA+QHY+ ++ +     + V ++T  M  A 
Sbjct: 289 SGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSLQGFF--PDLEVVLLTSGMKAAD 346

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++ AL +I  G+A +I+GTH+L QD++ Y++L LVI DEQHRFGV QR    +K   P V
Sbjct: 347 KKVALSKIESGEAQMIVGTHSLIQDTVTYHRLGLVITDEQHRFGVNQRRIFREKGDNPDV 406

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I + PAGRKPI T  +   ++D V+  +K  L +  
Sbjct: 407 LMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLAWIKGELEKDA 466

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++ V     L + F  S  +A++HGRM + +K+ +M  FK+  
Sbjct: 467 QVYFISPLIEESEALDLKNAVALHQELTDFFGDSATVALMHGRMKNDEKDQIMQDFKDKK 526

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L+ +P  +
Sbjct: 527 SQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVLVANPK-N 585

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                R+  +  T DGF++AEEDLK R  GEI G +QSG+P+F +A      ++LE AR+
Sbjct: 586 DTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARR 645

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            A  I++ DP+     G  + I ++L   +E
Sbjct: 646 VASQIVS-DPNWRENPGWQV-IEVHLRSQSE 674


>gi|295104656|emb|CBL02200.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii
           SL3/3]
          Length = 686

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 230/676 (34%), Positives = 347/676 (51%), Gaps = 20/676 (2%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P+   +GVG K +    K+            DLL ++P  +ID      I+E   +  
Sbjct: 12  DTPVRYLKGVGPKTAERFEKL------GIVTLADLLCHYPRRYIDFSKPYSIAEAPADTE 65

Query: 70  VTITGYISQHS--SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             +   +            RR  +I   D    + + +F             G++    G
Sbjct: 66  CVVKAEVFAKPGGRILPGGRRMERITAGDDVASLEITWFNN--PYATQKLQLGQEYYFQG 123

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
            +     R  MV+P      ++ +     EAVY    GL+     + I + L    +LP+
Sbjct: 124 IVTGGMLRRQMVNPQ--VRTAEQIQAAPFEAVYPQTEGLTSSAISRCIRQLLPHAELLPD 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +  ++LQK      AEA   IH P      E  + AR RL Y+ELL  Q+ +  MR + 
Sbjct: 182 PLPPEMLQKYRLLPKAEAVRAIHCPATE---EQAAAARRRLIYEELLVLQLGIGRMRSRG 238

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
               G P+           +++PF+PT +Q  A+++IL DM+    M R+LQGDVGSGKT
Sbjct: 239 AAVTGAPMRRADPS--PFWQSLPFAPTGAQRRAVEEILNDMAGDTAMNRLLQGDVGSGKT 296

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           LVA  A+ A + AG QA ++AP  ILA QH E + +      + V ++TG M  A RR  
Sbjct: 297 LVAAAAIWACIRAGYQAALLAPTEILAAQHAEGLNRLLAPFGMRVALLTGGMKAAARRTT 356

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  I   +A +++GTHAL  + +++ +L L ++DEQHRFGV+QR  L +KA  PH+L+M+
Sbjct: 357 LAAIRKDEADLVVGTHALMSEGVEFARLGLAVIDEQHRFGVRQRGALAEKAANPHLLVMS 416

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL L   GD+DIS + E P GR P+KT  I   R  ++   L   + +G++ Y 
Sbjct: 417 ATPIPRTLGLLIYGDLDISILDELPPGRTPVKTRCITGKRRQDLYRFLDSEIDKGRQVYL 476

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP IE+  +    +V   +  + +       + ++HG++   +K +VM+ FK G    L
Sbjct: 477 VCPAIEDVPDGGLNAVKTYYEDIAKALLPDRRVGLMHGKLKPKEKAAVMEDFKAGRLDAL 536

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVG+DV +AS+++IENAE +GL+ LHQLRGRVGRG   S C L+     S+   
Sbjct: 537 VSTTVIEVGVDVPNASVMVIENAERYGLSALHQLRGRVGRGAAESWCFLV-SDNTSEAVQ 595

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL  L +T DGF +A+ DL+ R  G+  G +Q G+P   IA        L  A+ +A  
Sbjct: 596 KRLKFLCSTTDGFAVAQYDLETRGPGDFFGSRQHGLPTLQIADLMNDTRTLHAAQSEAIA 655

Query: 666 ILTQDPDLTSVRGQSI 681
           +L  DP L S     +
Sbjct: 656 LLAADPLLESPAHALL 671


>gi|160890807|ref|ZP_02071810.1| hypothetical protein BACUNI_03252 [Bacteroides uniformis ATCC 8492]
 gi|270295805|ref|ZP_06202005.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D20]
 gi|317479756|ref|ZP_07938878.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 4_1_36]
 gi|156859806|gb|EDO53237.1| hypothetical protein BACUNI_03252 [Bacteroides uniformis ATCC 8492]
 gi|270273209|gb|EFA19071.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D20]
 gi|316904126|gb|EFV25958.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 4_1_36]
          Length = 698

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 234/689 (33%), Positives = 377/689 (54%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +           DLL+Y P  ++DR     I EI
Sbjct: 1   MFDLATRDIKYLSGVGPQRASVLNKEL-----GIYSLHDLLYYFPYKYVDRSRIYYIQEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +    ++R      +DGTG + L++F +  + L   +   ++ 
Sbjct: 56  DGTMPYIQLKGEILSFETAGEGRQRRLIAHFSDGTGVVDLVWF-QGIKYLVGKYKVHQEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            V GK      RI M HP     +   ++   ++  Y+         L+    +K++   
Sbjct: 115 IVFGKPTFFNGRINMAHPDIDSASDLKLSSMGLQPYYNTTEKMKRSSLNSHAIEKMMNTV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + +L   LPE +   +L +     + EA   IH P      +    A+ RL ++EL   Q
Sbjct: 175 VQQLREPLPETLSPAILAEHHLMPLTEALVNIHFPANP---DLLRKAQYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + +K  G      G++      RN+PF  T +Q+  +K+I +D+    +M 
Sbjct: 232 LNILRYAKDRQRKYRGYIFERVGEVFNTFYSRNLPFELTNAQKRVLKEIRKDVGSGKQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE I++     ++ VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLMALDNGFQACMMAPTEILANQHYETIRELLYGMEVRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G  HI+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L 
Sbjct: 352 TGSVKGKRREAILAGLLTGDIHILIGTHAVIEDTVNFASLGLVVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    +R   + + 
Sbjct: 412 TKNVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIVTLHQFDSRRISLYQS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +   ++EG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ 
Sbjct: 472 MHKQIAEGRQVYIVYPLIKESEKIDLKNLEEGYLHVCEEFPECRVCKVHGKMKPAEKDAQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CI
Sbjct: 532 MQLFVSGEAQIMVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+    L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTGYKLAEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R+ A+ ++  DP       + +
Sbjct: 652 GQLLQYVREVAQTVVDADPHGMLPENEVL 680


>gi|332708716|ref|ZP_08428688.1| ATP-dependent DNA helicase RecG [Lyngbya majuscula 3L]
 gi|332352570|gb|EGJ32138.1| ATP-dependent DNA helicase RecG [Lyngbya majuscula 3L]
          Length = 828

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 240/688 (34%), Positives = 387/688 (56%), Gaps = 29/688 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+    VG K S +L+++         +  DLL+Y+P   I+   +  ++++    
Sbjct: 131 LDLPLAKLAAVGSKNSEYLARL------GLHKVRDLLYYYPRDHINYARQVNMADLVPGE 184

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVF 117
            VTI G + + + F   + +   IL   L D TG+I L  F+              K  +
Sbjct: 185 TVTIMGTVKRCNCFSSPRNKKLTILDIVLKDSTGQIKLSRFFAGFRYSNRSWQYQQKRRY 244

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFK 172
             G  +  +G +KK K  I +  P              +    +  VYSL  G+  D+ +
Sbjct: 245 PVGAVVAASGLVKKNKYGITLEDPELEVLEHPGGTIDSMKIGRVVPVYSLTEGVPADMVR 304

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           + I+ AL    ++ E +     ++     + +A   IH P+ A   +  + AR RL +DE
Sbjct: 305 RAIIAALPYTSLIKEPLPVTFRKEYGLMGVCDAIANIHFPQNA---DTLADARRRLVFDE 361

Query: 233 LLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            L  Q+  L  R+ Q K +    +   GK+  +  + +PF  T +Q   I +IL+DM  +
Sbjct: 362 FLYLQLGFLQRRQAQRKTQSSAVMAPIGKLFDQFNQLLPFELTGAQTRVINEILKDMESE 421

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVGSGKT+VA+ A+ AA+++G QA +MAP  +LA+QHY  +  +     + 
Sbjct: 422 TPMNRLVQGDVGSGKTIVAVYAIIAAIQSGYQAALMAPTEVLAEQHYRKLVNWFNLLHLP 481

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++TG+   + RRK   ++  G+  +++GTHAL QD + +  L LV++DEQHRFGV+QR
Sbjct: 482 VELLTGSTKVSKRRKIHSQLETGELPLLVGTHALIQDPVNFNNLGLVVIDEQHRFGVKQR 541

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            +L QK  +PHVL +TATPIPRTL LT  GD+D+S+I E P GR+ I+T ++        
Sbjct: 542 ARLQQKGQSPHVLTLTATPIPRTLALTLHGDLDVSQIDELPPGRQKIQTTVLRGKERKHA 601

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDID 529
            + ++  +++G++AY + P IEE  + + RSV+E    L E       + ++HGRM+  D
Sbjct: 602 YDLIRREVAQGRQAYMVLPLIEESNKLDLRSVIEEHKRLSESIFPEFKVGLLHGRMNSAD 661

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+  + +F++   +++++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG + 
Sbjct: 662 KDKALSAFRDNKSQIIVSTTVIEVGVDVPNATVMMIENAERFGLSQLHQLRGRVGRGSDK 721

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C LL     ++ +  RL VL+ ++DGF I+E D++ R  GE+LG +QSG+  F +A  
Sbjct: 722 SYC-LLVSGSNTETARQRLGVLEQSQDGFFISEMDMRFRGPGEVLGKRQSGLADFALASL 780

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVR 677
                +L +AR  A+ I+ QD  L +  
Sbjct: 781 VEDQEVLNLARDAAEKIILQDEILDNYP 808


>gi|304311594|ref|YP_003811192.1| RecG-like helicases [gamma proteobacterium HdN1]
 gi|301797327|emb|CBL45547.1| RecG-like helicases [gamma proteobacterium HdN1]
          Length = 698

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 248/678 (36%), Positives = 378/678 (55%), Gaps = 21/678 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L +P+   +GVG   ++ L+++      +     DLLF+ P  + DR     I+ +   
Sbjct: 10  ALRSPVQYLKGVGPTLAVLLTRL------HIHTVQDLLFHLPFRYQDRTQLTPIATLEGS 63

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           +   I G +       + +RR   + + DG+G + +  F+      K  F +G+ +   G
Sbjct: 64  QEALIQGEVLSC-DIHMGRRRTLAVRITDGSGTLLIRMFHFSATQQKQ-FAKGQWLRCYG 121

Query: 128 KIKKLKNRIIMVHPHYIFHNS-QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           + +   +   MVHP Y   +  +      +  +Y L  G+S     K+  EAL+RL    
Sbjct: 122 EARVTASGREMVHPEYRLIDDPEQPLTESLTPIYPLTEGISQARLLKLTEEALTRLDAHR 181

Query: 187 EWI---EKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIA 239
           E +    + L Q +  PS+A+A + +H P    +       + PA++RLA +E+LA  ++
Sbjct: 182 EALELVPEALFQARKLPSLADALHYVHRPPTDANVYQLLNGSHPAQQRLALEEMLAHHLS 241

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L  +R   +     P+    ++ + +L+ +PF+PT +Q     +I  D+ Q   MLR++Q
Sbjct: 242 LRKLRATIRHHPAPPMPASRELIRGLLQRLPFAPTGAQNRVFAEIEADLQQPAPMLRLVQ 301

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +A   A+EAG Q  +MAP  ILA+QHY+   ++ +   +    +TG +
Sbjct: 302 GDVGSGKTLVAALAALQAIEAGYQVALMAPTEILAEQHYQNFCEWFEPLGLHTHWLTGKL 361

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +R  LE    G  H++ GTHALFQD + Y +L LVI+DEQHRFGV QRL L QK  
Sbjct: 362 SARQKRLVLEDTRTGHTHLLAGTHALFQDDVHYARLGLVIIDEQHRFGVHQRLALKQKGA 421

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL +++  D+D S I E P GR PI TV +  +R DE+I+R+
Sbjct: 422 VNGILPHQLIMTATPIPRTLAMSAYADLDTSIIDELPPGRTPITTVAVDASRRDEIIQRV 481

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
                 G++AYW+C  IEE +    ++  +    L        I +IHGRM   +K  VM
Sbjct: 482 YQNCKTGRQAYWVCTLIEESETLQCQAAEDTTEYLRAALPDLQIGLIHGRMKAREKSQVM 541

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           ++F+    +LL+ATTVIEVG++V +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L
Sbjct: 542 EAFQQNAIQLLVATTVIEVGVNVPNASLMIIENPERLGLAQLHQLRGRVGRGAAQSFCVL 601

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PLS+    R+ +++ + DGF+IA+ DL+ R  GE+LG +Q+G   F +A       
Sbjct: 602 LYQKPLSRAGRERIEIMRESHDGFVIAQRDLELRGPGEVLGTRQTGDLNFKVADLLRDQD 661

Query: 655 LLEIARKDAKHILTQDPD 672
           LL+  +  A H+L+  PD
Sbjct: 662 LLDDCKALADHVLSHHPD 679


>gi|331005600|ref|ZP_08328970.1| ATP-dependent DNA helicase RecG [gamma proteobacterium IMCC1989]
 gi|330420573|gb|EGG94869.1| ATP-dependent DNA helicase RecG [gamma proteobacterium IMCC1989]
          Length = 708

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 246/709 (34%), Positives = 379/709 (53%), Gaps = 32/709 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N +   ++  +GVG + +  L K+            D+LF+ P  + DR     I  +  
Sbjct: 10  NGILTSVTALKGVGAQLAKKLEKL------GIYTLQDMLFHLPRQYADRTRVTPIGSLQP 63

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            + V I   + + +     KRR     + D TG ++L F++      +     G +I   
Sbjct: 64  NQSVVIEAEV-RGTDVVFGKRRSLICRVQDNTGTLSLRFYHFSNAQ-RATLATGARIRCY 121

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSR-- 181
           G+ ++  + + + HP Y   +S   +  L   +  +Y +  G++ +  + +I +AL+   
Sbjct: 122 GETRRGASGLELYHPEYQLLSSNAAHSGLEETLTPIYPITEGITQNRLRTLIKQALTHAK 181

Query: 182 -------LPVLPEWIEKDLLQKKSFP-SIAEAFNIIHNPRKAKDFEWT----SPARERLA 229
                  L +LP    ++     S P S+ E    +H P K  D         P ++ L 
Sbjct: 182 DFDFRGYLALLPADTPEESAPAISLPNSLFEPLAYLHAPPKNADLAQLLAGEHPYQQVLI 241

Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
            +EL A Q+ LL +R+Q +++  +P+ V+  +  + ++ + F+ T +Q+  ++DI QD+ 
Sbjct: 242 MEELTAYQLNLLRLREQRQQQAAVPLAVDKALEDQFIQALGFTLTNAQQRVVEDISQDLR 301

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
               M+R+LQGDVGSGKT+VA +A   A+    Q VIMAP  ILA+QH    +K+     
Sbjct: 302 LSIPMMRLLQGDVGSGKTVVAALAALHAIAHQQQVVIMAPTEILAEQHRLNFEKWFSPLG 361

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           I V  +TG      RR+ L  +  G   ++IGTHALFQDS+ + +L LVI+DEQHRFGV 
Sbjct: 362 ICVGSLTGKQKVKERREQLAALEQGVTQVVIGTHALFQDSVVFNRLALVIIDEQHRFGVH 421

Query: 410 QRLKLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           QRL L     +    PH L+MTATPIPRTL +++  D+D S I E P GR P++TVII  
Sbjct: 422 QRLSLRNKGNKHTGIPHQLIMTATPIPRTLAMSAYADLDYSVIDELPKGRIPVETVIISQ 481

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524
            +  E+I+R+     +G++AYW+C  IE  +    ++  E    L     + ++ ++HGR
Sbjct: 482 QKRPEIIQRIDYACQQGRQAYWVCTLIENSEALEAQAAEEAATLLASTLPNLTVGLVHGR 541

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +   +KE VM  FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVG
Sbjct: 542 LKPPEKEQVMAQFKAGEIDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVG 601

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RG   S C+LLY   +S N   RL  +++T DGF IAE DL+ R  GE+LG +Q+G   F
Sbjct: 602 RGSIASHCVLLYGDKVSLNGKERLKAMRSTSDGFKIAEVDLQLRGPGEVLGTRQTGDIDF 661

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            +A       L+      A+ I+T  P+  +   +  R L     Y +A
Sbjct: 662 ALADLRRDLYLMPKVNAYAQAIITHFPEHIAPLSE--RWLGKNTHYAQA 708


>gi|289662159|ref|ZP_06483740.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 717

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 250/700 (35%), Positives = 382/700 (54%), Gaps = 36/700 (5%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           PS      APLS+  GVG K +   +              DL ++ P  + DR     I+
Sbjct: 9   PSLAVTGQAPLSSLPGVGPKVADKFA------ARGILSVQDLWWHLPLRYEDRTRLTTIA 62

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGR 121
           ++       I G +        + R   ++ ++D + G + L FF+ +   +   F  G 
Sbjct: 63  QLQSGVPAQIEGRVDAVER-GFRFRPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FAVGT 120

Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEAL 179
           ++ V G  K  ++   +VHP Y +    +D      ++ VY +  G+     +K+I +AL
Sbjct: 121 RVRVFGTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIGQAL 180

Query: 180 SRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDEL 233
            RLP     E +    LQ +  PS+  A   +H P    D         PA++RLA +EL
Sbjct: 181 ERLPPEAALELLPPHWLQDEQLPSLRAALLTMHRPPVGTDPQQLLAGAHPAQQRLAIEEL 240

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA Q++L   R   ++     +   G + Q++   +PF  T +Q+   + I +D++Q + 
Sbjct: 241 LAHQLSLRRQRIALQRFHAPMLPGNGTLVQQLRSALPFQLTGAQQRVFEQIARDLAQPSP 300

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + +   + + 
Sbjct: 301 MLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRGWLEPLGVRIV 360

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    R  A+  +A GQA +++GTHAL QD++ ++ L L I+DEQHRFGV QRL 
Sbjct: 361 WLAGKVTGKARVAAMAEVASGQAQLVVGTHALMQDAVVFHDLALAIIDEQHRFGVHQRLA 420

Query: 414 LTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L  K       PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+++   R  
Sbjct: 421 LRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTIVLSAERRP 480

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE--------------RFNSLHEHFT 515
           E++ER++V  +EG++AYW+C  IEE +E    +  +               F +L     
Sbjct: 481 ELVERIRVACAEGRQAYWVCTLIEESEEPEKGAQGQYSGPPRIEAQAAEVTFEALSAQLP 540

Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIENAE  GLA
Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGLA 600

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+ R  GE+L
Sbjct: 601 QLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLELRGPGELL 660

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           G +Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 661 GTRQTGLASFRIADLARDAGLLPRVQVLAERLLEEAPEIA 700


>gi|296331162|ref|ZP_06873636.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674318|ref|YP_003865990.1| branch migrating ATP-dependent DNA helicase involved in DNA
           recombination and repair [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151806|gb|EFG92681.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412562|gb|ADM37681.1| branch migrating ATP-dependent DNA helicase involved in DNA
           recombination and repair [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 682

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 234/682 (34%), Positives = 373/682 (54%), Gaps = 23/682 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
              ++  +G+G +    L+++            DLL Y P  + D      + E+  +  
Sbjct: 6   QTSIANIKGIGPETEKTLNEL------GIYDISDLLNYFPYRYDDY-ELRDLEEVKHDER 58

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTG 127
           VT+ G +    S     ++  ++      G   IT + F R    LK     G  +TV+G
Sbjct: 59  VTVEGKVHSEPSLTYYGKKRNRLTFRVLVGHYLITAVCFNR--PYLKKKLSLGSVVTVSG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLP 186
           K  K +  I +        N        IE VYS+   ++V + ++ I +AL++    LP
Sbjct: 117 KWDKHRQTISVQ----ELKNGPHQEDKSIEPVYSVKENVTVKMMRRFIQQALNQYADSLP 172

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245
           + + + L  +   P   +A   +H P      E    AR R  Y+E L  Q+ +   RK 
Sbjct: 173 DPLPEKLKTRYKLPDYHQALKAMHQPETR---EALKLARRRFVYEEFLLFQLKMQAFRKA 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + ++  GI      +   + ++++PF  T +Q   +++I  DMS   RM R+LQGDVGSG
Sbjct: 230 EREQTQGIRQRFSNEELMRFIKSLPFPLTNAQSRVLREITADMSSPYRMNRLLQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT VA IA+ AA+ +G Q  +M P  ILA+QH + +    +   + V ++T ++    R+
Sbjct: 290 KTAVAAIALYAAILSGYQGALMVPTEILAEQHADSLVSLFEKWDVSVALLTSSVKGKRRK 349

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LER+  G+  I++GTHAL QD +++  L LVI DEQHRFGV+QR KL  K   P VL 
Sbjct: 350 ELLERLEAGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLRNKGQDPDVLF 409

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  G++D+S I E PAGRK I+T  +  + +D ++  ++  L +G++A
Sbjct: 410 MTATPIPRTLAITVFGEMDVSVIDEMPAGRKQIETYWVKHDMLDRILAFVEKELKQGRQA 469

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP IEE  + + ++ ++ +N L + F     + ++HG++   +K+ VM  F    C+
Sbjct: 470 YIICPLIEESDKLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVMREFSANQCQ 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTV+EVG++V +A+I++I +A+ FGL+QLHQLRGRVGRGE  S CIL+  P  S+ 
Sbjct: 530 ILVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGEHQSFCILMADPK-SET 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGF ++E+DL+ R  G+  G KQSGMP+F +A        LE AR+DA
Sbjct: 589 GKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRALETARQDA 648

Query: 664 KHILTQDPDLTSVRGQSIRILL 685
            +++  D          +R  L
Sbjct: 649 ANLVASDAFWKEPEYGVLREQL 670


>gi|301794675|emb|CBW37126.1| ATP-dependent DNA helicase [Streptococcus pneumoniae INV104]
          Length = 671

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 241/687 (35%), Positives = 386/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KIKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEAWQEDPEWRMIALHLEKKEH 669


>gi|238897837|ref|YP_002923516.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465594|gb|ACQ67368.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 697

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 240/679 (35%), Positives = 374/679 (55%), Gaps = 24/679 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS   GV       L+K+      N     DLL + P  + DR +   I  +       
Sbjct: 14  PLSDLSGV---SGNHLAKLSRI---NLYNVQDLLLHLPLRYEDRTHLYSIENLEHGLFGA 67

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I Q +     +RR     + DGTG + L FF+     ++N    G+ + V G++K+
Sbjct: 68  VQGRIVQ-AEMSSGRRRILTCQIEDGTGALILRFFHFNKG-IQNALSVGKDVMVYGEVKE 125

Query: 132 LKNRIIMVHPHYIFH--NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
               + M+HP +     N++ +   ++  +YS   GLS     K++ +AL+ L   P  E
Sbjct: 126 GYYGLEMIHPKFKIQGKNNETLLSTVLTPIYSTTEGLSQSTLNKLVGQALALLEATPIAE 185

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDELLAGQIALLLM 243
            +   L+   S  S+ EA   +H P K    E  +  R     RL ++EL+A  ++LL  
Sbjct: 186 ILPSQLMT--SLISLPEAIKTLHRPPKNISLEKLTQWRHPACIRLIFEELMAYHLSLLTA 243

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  K    +P + +  + +  L ++ F  T +Q+  + +I +D+++   M+R++QGDVG
Sbjct: 244 RENAKHHRALPFSKKEALKKSFLSSLTFKMTSAQQRVVSEIERDLARSTPMMRLIQGDVG 303

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A    +  G Q  +MAP  ILA+QH    +++     +    + G      
Sbjct: 304 SGKTLVAALAALQVIAHGKQVALMAPTEILAEQHLTQFQQWFTPLGLSAGCLLGKQKGKL 363

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R+     IA G+  ++IGT A+FQ  +++  L LVI+DEQHRFGV QRL L  KA     
Sbjct: 364 RQAQQNAIASGKILMVIGTQAIFQAHVKFSALALVIIDEQHRFGVHQRLALWSKAEKQGF 423

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV- 478
            PH L+MTATPIPRTL +++  ++D S I E P+ R PI TV+IP  R  E+I+R+K + 
Sbjct: 424 HPHQLIMTATPIPRTLTMSAYANLDTSIIDELPSDRIPIHTVVIPDTRRIEIIDRIKEIC 483

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           LSEG++AYW+C  I+E +    ++    +  L +      + ++HGR+ + +K+ +M +F
Sbjct: 484 LSEGRQAYWVCTLIDESELLEAQAAEVTYEELRKALPDIQMGLLHGRVKESEKDIIMQAF 543

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G  +LL+ATTVIEVGI+V +AS++IIEN E  GLAQLHQLRGR+GRG   S C+LLY 
Sbjct: 544 HRGEVQLLVATTVIEVGINVPNASLMIIENPERLGLAQLHQLRGRIGRGSIASYCVLLYK 603

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS+ +  RL +++ T DGF+IA++DL+ R  G++LG +Q+G  KF +A       LL 
Sbjct: 604 TPLSQVAQQRLQIMRETHDGFVIAQKDLEIRGPGQLLGTRQTGSLKFKVADIVRDQDLLS 663

Query: 658 IARKDAKHILTQDPDLTSV 676
              + A  +  + P    V
Sbjct: 664 QICEWALFLHKEYPKQAKV 682


>gi|326335996|ref|ZP_08202172.1| DNA helicase RecG [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691793|gb|EGD33756.1| DNA helicase RecG [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 700

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 245/704 (34%), Positives = 380/704 (53%), Gaps = 24/704 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P+   RGVG + +  L   +   N     + DLL   P+ +IDR    KI ++ 
Sbjct: 1   MVILETPIEHLRGVGTQRATLLKNELQVAN-----YQDLLHLFPTRYIDRTQYYKIQDLR 55

Query: 66  EER-IVTITGYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           +    V I G I    +   + +R         DGT  + L++F+  ++ LK+       
Sbjct: 56  DSSAEVQIIGRIIHLKTVTGKNKRQQRLVATFTDGTASMELIWFH-PSQWLKDHLLLNVP 114

Query: 123 ITVTGKIKKLKNRIIMVHPHYI-FHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIV 176
             + G+         MVHP        Q+     I+AVY         G++  + +++  
Sbjct: 115 YVIFGRCSLFAGTFSMVHPEMETLEEHQNTLQGNIQAVYPSTEKLTKRGITQRVMRRLFE 174

Query: 177 EALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
                +     E +  ++LQ        EA   IH P+     +  + A+ RL  +EL  
Sbjct: 175 TLFHEVGKDFQETLPNEMLQPLRLLPKGEALFQIHFPQSQ---DLLAKAQFRLKLEELFY 231

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRM 294
            Q+ L+      KK  G      G        + +PF  T++Q+  IK+I  DM+   +M
Sbjct: 232 IQLQLIQKNYLNKKLKGFLFPKVGDYFNTFYYQYLPFPLTEAQKRVIKEIRNDMATGAQM 291

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVG+GKT+VAL AM  A++   QA +MAP  ILAQQH++ I     +T + + +
Sbjct: 292 NRLLQGDVGAGKTIVALFAMLLALDNHYQACLMAPTEILAQQHFQGISSLLAHTNVHIAL 351

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+     R    + + +GQ  I+IGTHAL +D ++++ L L I+DEQHRFGV+QR KL
Sbjct: 352 LTGSTKTKERHLIHQSLENGQLQIVIGTHALLEDKVRFHNLGLAIIDEQHRFGVEQRSKL 411

Query: 415 TQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             K    PHVL+M+ATPIPRTL ++  GD+DIS I E P GRKPIKT+        ++ +
Sbjct: 412 WHKNELPPHVLIMSATPIPRTLAMSLYGDLDISVIDELPPGRKPIKTIHQYDTHRGKIYQ 471

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDK 530
            L   +++G++ Y + P IEE +  +F+++ E +  L   F +   +IA++HG++   +K
Sbjct: 472 FLHDEITKGRQIYVVYPLIEESEALSFKNLTEGYQQLCSAFPAPEYTIAMVHGQLKPEEK 531

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E+ M  F+ G  ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S
Sbjct: 532 EAQMQLFQEGKAQIMVATTVIEVGVNVPNASVMLIESAERFGLSQLHQLRGRVGRGAEQS 591

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            CIL+    LS +S TR+  +  T DGF IAE DLK R  G+++G +QSG+    IA   
Sbjct: 592 YCILMTDVKLSHDSRTRMETMVATNDGFQIAEVDLKLRGPGDLMGKQQSGVLALKIADLV 651

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
              +LL++AR  A  ++  DP+LT     ++   L L + N   
Sbjct: 652 KDGALLKVARDYATDLIHIDPELTDPSHVNVANTLSLLKRNRGI 695


>gi|260171931|ref|ZP_05758343.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D2]
 gi|315920243|ref|ZP_07916483.1| ATP-dependent DNA helicase recG [Bacteroides sp. D2]
 gi|313694118|gb|EFS30953.1| ATP-dependent DNA helicase recG [Bacteroides sp. D2]
          Length = 698

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 237/689 (34%), Positives = 372/689 (53%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +           DL++Y P  +IDR     I EI
Sbjct: 1   MFDLATRDIKFISGVGPQKAAVLNKELE-----IYSLHDLIYYFPYKYIDRSRIYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +    ++R      +DGTG + L++F +  + +   +    + 
Sbjct: 56  DGNMPYIQLKGEILGFETIGEGRQRRLTAHFSDGTGVVDLVWF-QGIKYILGKYKLHEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            + GK      RI + HP     +   ++   ++  YS         L+    +K++   
Sbjct: 115 IIFGKPTVFNGRINVAHPDVDKPDDLKLSSVGLQPYYSTTEKMKRSFLNSHAIEKMMATV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + ++   LPE +   LL +     + EA   IH P      +    A+ RL ++EL   Q
Sbjct: 175 IQQIQEPLPETLSPKLLTEHHLMPLTEALRNIHFPTNP---DVLRRAQYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + K+  G      G +      +N+PF  T +Q+  +K+I  D+    +M 
Sbjct: 232 LNILRYAKDRQKRYRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G   I+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L 
Sbjct: 352 TGSIKGKRREAILSGLLTGDVQILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   
Sbjct: 412 SKNVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K+  
Sbjct: 472 VRKQIDEGRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPKCTVCKVHGKMKPAEKDEQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MQLFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+ +  L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ I+ QDP   S   + +
Sbjct: 652 GQLLQYVRAIAESIVEQDPAAQSPENEIL 680


>gi|30263858|ref|NP_846235.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Ames]
 gi|47778232|ref|YP_022668.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186705|ref|YP_029957.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Sterne]
 gi|65321183|ref|ZP_00394142.1| COG1200: RecG-like helicase [Bacillus anthracis str. A2012]
 gi|165873284|ref|ZP_02217892.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0488]
 gi|167636663|ref|ZP_02394953.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0442]
 gi|167642024|ref|ZP_02400255.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0193]
 gi|170689646|ref|ZP_02880827.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0465]
 gi|170709348|ref|ZP_02899763.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0389]
 gi|177655967|ref|ZP_02937119.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0174]
 gi|190566221|ref|ZP_03019140.1| ATP-dependent DNA helicase RecG [Bacillus anthracis Tsiankovskii-I]
 gi|196035896|ref|ZP_03103298.1| ATP-dependent DNA helicase RecG [Bacillus cereus W]
 gi|196047426|ref|ZP_03114638.1| ATP-dependent DNA helicase RecG [Bacillus cereus 03BB108]
 gi|218904985|ref|YP_002452819.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH820]
 gi|225865836|ref|YP_002751214.1| ATP-dependent DNA helicase RecG [Bacillus cereus 03BB102]
 gi|227813237|ref|YP_002813246.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. CDC 684]
 gi|228916492|ref|ZP_04080058.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928903|ref|ZP_04091935.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935169|ref|ZP_04097996.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947574|ref|ZP_04109864.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228986998|ref|ZP_04147124.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229092898|ref|ZP_04224032.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-42]
 gi|229123369|ref|ZP_04252573.1| ATP-dependent DNA helicase recG [Bacillus cereus 95/8201]
 gi|229157431|ref|ZP_04285509.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 4342]
 gi|229186095|ref|ZP_04313264.1| ATP-dependent DNA helicase recG [Bacillus cereus BGSC 6E1]
 gi|229603604|ref|YP_002868092.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0248]
 gi|254683437|ref|ZP_05147297.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721386|ref|ZP_05183175.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A1055]
 gi|254735893|ref|ZP_05193599.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Western
           North America USA6153]
 gi|30258502|gb|AAP27721.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Ames]
 gi|47551937|gb|AAT35402.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180632|gb|AAT56008.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Sterne]
 gi|164710969|gb|EDR16538.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0488]
 gi|167510023|gb|EDR85438.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0193]
 gi|167527914|gb|EDR90730.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0442]
 gi|170125743|gb|EDS94655.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0389]
 gi|170666391|gb|EDT17173.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0465]
 gi|172079911|gb|EDT65018.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0174]
 gi|190563140|gb|EDV17106.1| ATP-dependent DNA helicase RecG [Bacillus anthracis Tsiankovskii-I]
 gi|195991545|gb|EDX55511.1| ATP-dependent DNA helicase RecG [Bacillus cereus W]
 gi|196021734|gb|EDX60429.1| ATP-dependent DNA helicase RecG [Bacillus cereus 03BB108]
 gi|218539493|gb|ACK91891.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH820]
 gi|225787117|gb|ACO27334.1| ATP-dependent DNA helicase RecG [Bacillus cereus 03BB102]
 gi|227004793|gb|ACP14536.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. CDC 684]
 gi|228597271|gb|EEK54922.1| ATP-dependent DNA helicase recG [Bacillus cereus BGSC 6E1]
 gi|228626158|gb|EEK82907.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 4342]
 gi|228660145|gb|EEL15781.1| ATP-dependent DNA helicase recG [Bacillus cereus 95/8201]
 gi|228690520|gb|EEL44303.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-42]
 gi|228772776|gb|EEM21216.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228812094|gb|EEM58425.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824534|gb|EEM70339.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830710|gb|EEM76315.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843071|gb|EEM88153.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268012|gb|ACQ49649.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0248]
          Length = 682

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 226/681 (33%), Positives = 373/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLSRYKLLPRYEALRALHFPTGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +  +  Q+ +  +PF  T +Q   + +I++DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSEELQEFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++    RR+ 
Sbjct: 292 VVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVRRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  +++G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEINKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAL 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  S+R  L 
Sbjct: 651 LVDSEAFWHNDQYASLRTYLD 671


>gi|299148213|ref|ZP_07041275.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_23]
 gi|298512974|gb|EFI36861.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_23]
          Length = 698

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 237/689 (34%), Positives = 372/689 (53%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +           DL++Y P  +IDR     I EI
Sbjct: 1   MFDLATRDIKFISGVGPQKAAVLNKELE-----IYSLHDLIYYFPYKYIDRSRIYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +    ++R      +DGTG + L++F +  + +   +    + 
Sbjct: 56  DGNMPYIQLKGEILGFETIGEGRQRRLTAHFSDGTGVVDLVWF-QGIKYILGKYKLHEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            + GK      RI + HP     +   ++   ++  YS         L+    +K++   
Sbjct: 115 IIFGKPTVFNGRINVAHPDVDKPDDLKLSSVGLQPYYSTTEKMKRSFLNSHAIEKMMATV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + ++   LPE +   LL +     + EA   IH P      +    A+ RL ++EL   Q
Sbjct: 175 IQQIQEPLPETLSPKLLAEHHLMPLTEALRNIHFPTNP---DVLRRAQYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + K+  G      G +      +N+PF  T +Q+  +K+I  D+    +M 
Sbjct: 232 LNILRYAKDRQKRYRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G   I+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L 
Sbjct: 352 TGSIKGKRREAILAGLLTGDVQILIGTHAVVEDTVNFSSLGFVVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   
Sbjct: 412 SKNVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K+  
Sbjct: 472 VRKQIDEGRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPKCTVCKVHGKMKPAEKDEQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MQLFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+ +  L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ I+ QDP   S   + +
Sbjct: 652 GQLLQYVRAIAESIVEQDPAAQSPENEIL 680


>gi|288572872|ref|ZP_06391229.1| ATP-dependent DNA helicase RecG [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288568613|gb|EFC90170.1| ATP-dependent DNA helicase RecG [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 687

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 249/698 (35%), Positives = 386/698 (55%), Gaps = 22/698 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L + +    GVG   +  L ++            DLLF+ P  + DR     + ++ 
Sbjct: 1   MTVLDSSIRYLNGVGPVKASRLERL------GVRTLGDLLFFFPRRYEDRRRIVSLKDLQ 54

Query: 66  EERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            + +      +    S    K+R    + +++DG G  + L+F RK   L  +   G ++
Sbjct: 55  ADTVAASIVTVVSTDSRLSVKKRISLTRAIVSDGHGLASALWFNRKG--LDRLLTSGTRL 112

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDV--NFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
            + GK+ K       V P +      +V      I AVYSL  GLS    +KII   L +
Sbjct: 113 ALYGKVAKEGGMAQFVAPEFEILGEDEVPVQIGGIVAVYSLTAGLSDRWLRKIIHRLLDQ 172

Query: 182 -LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            LP L + + + LL+      +  A   +H P      E    AR RLA+DEL   Q+ L
Sbjct: 173 VLPELEDHMPESLLRDLDLEPLGPAIREMHCPVSP---ESWKRARRRLAFDELFMLQVGL 229

Query: 241 LLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            + R+   +  G P + + G + +KI  ++PF  T+ Q   + +I +DMS    M R+LQ
Sbjct: 230 AIRRRSVGELRGAPRLPLGGPLRRKIEHSLPFELTEDQSRVLAEIGRDMSSDVTMNRLLQ 289

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT VA +AM  AV+ G QA +M P  ILAQQH   ++ + +   + V ++TG +
Sbjct: 290 GDVGSGKTAVATLAMMQAVDGGTQAALMVPTSILAQQHAIRLRSFLEPHGVKVGLLTGGL 349

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R+  L+ IA G   ++IGTHA+ Q+ + + +L L+++DEQHRFGV QR  L  K  
Sbjct: 350 SAKERKALLKEIAEGSIDLVIGTHAVIQEDVVFRRLGLIVIDEQHRFGVLQRGALGGKGE 409

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PHVL+MTATPIPRTL L+  GD+ +S I   P GR P+KT  I  +++D++   L   +
Sbjct: 410 MPHVLVMTATPIPRTLALSVYGDLSVSVIRTMPEGRIPVKTRWIGDHKVDDLYGFLDSEM 469

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
             G++ +W+CP IEE +  N R + ERF+ L   F +  ++++HGRMS  ++ SVM+ F 
Sbjct: 470 DRGRRIFWVCPLIEESEHLNARPLEERFDFLVRRFGSERVSMLHGRMSMEERRSVMEEFA 529

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   LL +TTVIEVG+DV +A++++IE AE FGL+QLHQLRGRVGR +E S C LL  P
Sbjct: 530 SGESPLLASTTVIEVGVDVPEATVMVIEGAERFGLSQLHQLRGRVGRSDEQSWCFLLGKP 589

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             +++   RL  + ++ DGF +AE D+  R  GEI G +Q G+  F +A     + LL +
Sbjct: 590 G-TQDGNRRLEAICSSSDGFEVAEADMAIRGPGEICGTRQHGLTDFKVADLIRDEDLLTL 648

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
           AR+ A  ++ +DP+L S+   +++ +++   Y E  + 
Sbjct: 649 ARRIAIDMVGRDPNLDSIP--AVKEMVFRM-YREKLEL 683


>gi|52141640|ref|YP_085196.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
 gi|51975109|gb|AAU16659.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
          Length = 682

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 226/681 (33%), Positives = 373/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPNGLLSRYKLLPRYEALRALHFPTGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +  +  Q+ +  +PF  T +Q   + +I++DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSEELQEFIDTLPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++    RR+ 
Sbjct: 292 VVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVRRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  +++G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEINKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAL 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  S+R  L 
Sbjct: 651 LVDSEAFWHNDQYASLRTYLD 671


>gi|319899972|ref|YP_004159700.1| ATP-dependent DNA helicase RecG [Bacteroides helcogenes P 36-108]
 gi|319415003|gb|ADV42114.1| ATP-dependent DNA helicase RecG [Bacteroides helcogenes P 36-108]
          Length = 698

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 235/681 (34%), Positives = 375/681 (55%), Gaps = 21/681 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVT 71
           +    GVG + +  L+K +           DLL+Y P  ++DR     I EI      + 
Sbjct: 9   IKYLSGVGPQRASVLNKEL-----GIYSLHDLLYYFPYKYVDRSRIYHIQEIDGTMPYIQ 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I    +    ++R      +DGTG + L++F +  + L   +   +   V GK   
Sbjct: 64  LKGEILHFETVGEGRQRRLIAHFSDGTGMVDLVWF-QGIKYLLGQYKVHQDYVVFGKPTA 122

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEALSRL-PVL 185
              RI + HP     +   ++   ++  Y+         L+    +K++   + +L   +
Sbjct: 123 FNGRINIAHPDIDPVSELKLSTMGMQPYYNTTAKMKRSSLNSHAIEKMMSTVIQQLREPI 182

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMR 244
           PE +   +L +    S+ +A   IH P  +   E    A+ RL ++EL   Q+ +L   +
Sbjct: 183 PETLSPAILNEHHLMSLTDALTNIHFPVNS---ELLRKAQYRLKFEELFYVQLNILRYAK 239

Query: 245 KQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + +K  G      G+I      RN+PF  T +Q+  +K+I +D+    +M R+LQGDVG
Sbjct: 240 DRQRKYRGYIFEKVGEIFNSFYSRNLPFELTNAQKRVLKEIRRDVGSGKQMNRLLQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVAL++M  A++ G QA +MAP  ILA QHYE I +   +  + VE++TG++    
Sbjct: 300 SGKTLVALMSMLIALDNGFQACMMAPTEILANQHYETICELLYDMDVRVELLTGSVKGKR 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAPH 422
           R   L  +  G  HI+IGTHA+ +D + +  L LV++DEQHRFGV QR +L  +    PH
Sbjct: 360 RETILADLLTGDVHILIGTHAVIEDKVNFASLGLVVIDEQHRFGVAQRARLWTKSIQPPH 419

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   ++  ++EG
Sbjct: 420 VLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRKESLYRSVRKQIAEG 479

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ M  F +G 
Sbjct: 480 RQVYIVYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQMQLFVSGE 539

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+    L+
Sbjct: 540 AQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTGYKLA 599

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIAR 660
           +++  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA       LL+  R
Sbjct: 600 EDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLLQYVR 659

Query: 661 KDAKHILTQDPDLTSVRGQSI 681
           + A+ ++  DP       + +
Sbjct: 660 EIAQKVIDADPTGALPENEIL 680


>gi|237714387|ref|ZP_04544868.1| ATP-dependent DNA helicase recG [Bacteroides sp. D1]
 gi|262408219|ref|ZP_06084766.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_22]
 gi|294646288|ref|ZP_06723940.1| ATP-dependent DNA helicase RecG [Bacteroides ovatus SD CC 2a]
 gi|294806775|ref|ZP_06765602.1| ATP-dependent DNA helicase RecG [Bacteroides xylanisolvens SD CC
           1b]
 gi|229445551|gb|EEO51342.1| ATP-dependent DNA helicase recG [Bacteroides sp. D1]
 gi|262353771|gb|EEZ02864.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_22]
 gi|292638369|gb|EFF56735.1| ATP-dependent DNA helicase RecG [Bacteroides ovatus SD CC 2a]
 gi|294446057|gb|EFG14697.1| ATP-dependent DNA helicase RecG [Bacteroides xylanisolvens SD CC
           1b]
          Length = 698

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 237/689 (34%), Positives = 372/689 (53%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +           DL++Y P  +IDR     I EI
Sbjct: 1   MFDLATRDIKFISGVGPQKAAVLNKELE-----IYSLHDLIYYFPYKYIDRSRIYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +    ++R      +DGTG + L++F +  + +   +    + 
Sbjct: 56  DGNMPYIQLKGEILGFETIGEGRQRRLTAHFSDGTGVVDLVWF-QGIKYILGKYKLHEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            + GK      RI + HP     +   ++   ++  YS         L+    +K++   
Sbjct: 115 IIFGKPTVFNGRINVAHPDVDKPDDLKLSSVGLQPYYSTTEKMKRSFLNSHAIEKMMATV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + ++   LPE +   LL +     + EA   IH P      +    A+ RL ++EL   Q
Sbjct: 175 IQQIQEPLPETLSPKLLTEHHLMPLTEALRNIHFPTNP---DVLRRAQYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + K+  G      G +      +N+PF  T +Q+  +K+I  D+    +M 
Sbjct: 232 LNILRYAKDRQKRYRGYIFEKVGDVFNTFYAKNLPFQLTGAQKRVLKEIRNDVGSGRQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G   I+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L 
Sbjct: 352 TGSIKGKRREAILAGLLTGDVQILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   
Sbjct: 412 SKNVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K+  
Sbjct: 472 VRKQIDEGRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPKCTVCKVHGKMKPAEKDEQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MQLFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+ +  L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ I+ QDP   S   + +
Sbjct: 652 GQLLQYVRAIAESIVEQDPAAQSPENEIL 680


>gi|229098324|ref|ZP_04229271.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-29]
 gi|228685222|gb|EEL39153.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-29]
          Length = 682

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 229/681 (33%), Positives = 371/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGSVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLNRYKLLPRYEALRALHFPVGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSTELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + AA  A  Q  +M P  ILA+QHY+ + +      + VE++T ++  A RR+ 
Sbjct: 292 VVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSRFGMTVELLTSSVKGARRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L R+  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LARLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAI 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  S+R  L 
Sbjct: 651 LVDSEAFWHNDQYASLRTYLD 671


>gi|42782947|ref|NP_980194.1| ATP-dependent DNA helicase RecG [Bacillus cereus ATCC 10987]
 gi|42738874|gb|AAS42802.1| ATP-dependent DNA helicase RecG [Bacillus cereus ATCC 10987]
          Length = 682

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 227/681 (33%), Positives = 372/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +TVTGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLNLDETVTVTGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLSRYKLLPRYEALRALHFPSGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +  +  Q+ +  +PF  T +Q   + +I++DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSEELQEFIDALPFPLTGAQSRVVDEIMKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++    RR+ 
Sbjct: 292 VVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVRRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAL 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  S+R  L 
Sbjct: 651 LVDSEAFWHNDQYASLRTYLD 671


>gi|315607375|ref|ZP_07882374.1| DNA helicase RecG [Prevotella buccae ATCC 33574]
 gi|315250932|gb|EFU30922.1| DNA helicase RecG [Prevotella buccae ATCC 33574]
          Length = 690

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 239/670 (35%), Positives = 373/670 (55%), Gaps = 22/670 (3%)

Query: 15  TFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI-VTIT 73
              GVG +    LS+ +         + DL  Y+P  ++DR     I E++ +   V + 
Sbjct: 2   YLPGVGPRRKEILSREL-----GINTYGDLSEYYPYKYVDRSRLYTIDELTADMPFVQLK 56

Query: 74  GYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
           G I     F +  +++      +DG G + L++F   T+ + + +  G    V GK    
Sbjct: 57  GRILSFDEFVMGPRKKRIVAHFSDGHGVVDLVWFN-GTKYVYDSYKTGTDYIVFGKPGIF 115

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGL-----SVDLFKKIIVEALSRL-PVLP 186
             R   VHP     +   ++   ++  YS    +     +    +KI    + +L P LP
Sbjct: 116 GGRYQFVHPDIDDASKLQLSEMGMQPYYSTTEKMKKANFTSRSIEKITKTLIEKLSPQLP 175

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245
           E +   +L +    S  +A   IH P+ A + +     R RL ++EL   Q+ +L     
Sbjct: 176 ETLPDFILNRLHLVSRPQALRWIHYPKNADEMQRA---RLRLKFEELFYVQLNILRYASD 232

Query: 246 QFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
             +K  G   N  G I     R+ +PF  T +Q+  + +I  DM    +M R+LQGDVGS
Sbjct: 233 NRRKYRGYVFNRVGDIFNGFYRHNLPFPLTGAQKRVMHEIRADMGSGRQMNRLLQGDVGS 292

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVAL++M  A++ G QA IMAP  ILA+QH   IK + +   I VE++TG +    R
Sbjct: 293 GKTLVALMSMLIALDNGFQACIMAPTEILAEQHLHTIKDFLKGMDIRVELLTGIVKGKKR 352

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHV 423
           ++ L  +  G  HI +GTHAL +D++Q+ +L L +VDEQHRFGV QR KL  K    PHV
Sbjct: 353 KEVLAGLLDGSIHIAVGTHALIEDTVQFRQLGLAVVDEQHRFGVAQRAKLWAKNENPPHV 412

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N+   + + ++  ++EG+
Sbjct: 413 LVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKYDNQTTSLYQGIRQQIAEGR 472

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I+E ++ + +++ E + +L + F    ++ +HGRM   +KE  M  F  G  
Sbjct: 473 QVYIVFPLIKESEKMDLKNLEEGYEALKDVFPGYRMSKVHGRMKAAEKEEEMQKFVKGET 532

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ +  LS 
Sbjct: 533 QILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVTNYQLSA 592

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARK 661
            +  R+ ++ +T DGF IAE DLK R  G++ G +QSG+     IA       ++++AR 
Sbjct: 593 ETRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQIIQLARD 652

Query: 662 DAKHILTQDP 671
           +A+ I+  DP
Sbjct: 653 EAQKIIEDDP 662


>gi|269798117|ref|YP_003312017.1| ATP-dependent DNA helicase RecG [Veillonella parvula DSM 2008]
 gi|269094746|gb|ACZ24737.1| ATP-dependent DNA helicase RecG [Veillonella parvula DSM 2008]
          Length = 680

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 235/653 (35%), Positives = 369/653 (56%), Gaps = 15/653 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+T +G+G      L K+        T    LL Y P ++ DR    +I ++       +
Sbjct: 5   LTTIKGIGPGREKQLHKL------GITNVTSLLTYFPRTYEDRRTMYRIGDLKSGMTGGV 58

Query: 73  TGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +      + + R    ++++ DGTG + ++ F +     KN + +G++I   GK + 
Sbjct: 59  VGTVIAVQEKRPRPRLSILEVVIADGTGPLKIVLFNQG--YKKNFYKKGQRIYAYGKAEF 116

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
               + M  P              I  +Y+L  G+S  + +  +    +    LPE +  
Sbjct: 117 QYGTMQMNTPQMENLGDSGEPDRGIVPIYALADGVSQFVVRSSVRNWFAANHELPEILPV 176

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           ++ +   + S  +AF ++H P  +   E    AR +LAY+EL   Q  L L+R + +   
Sbjct: 177 EVRESHHYMSRYDAFKMMHFPDSS---EHYKEARHQLAYEELFVMQAGLALLRSKEQCHR 233

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G  +   G++  + + N+PFS T  Q+ A++DI  DM  +  M R+LQGDVGSGKT+VA 
Sbjct: 234 GPKMGPNGELMARCIENLPFSLTGDQQRALEDIRIDMEDERPMQRLLQGDVGSGKTIVAT 293

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           + +  A+E G Q  +MAP  ILA QHYE I+    N  I +E++TG+  +  +    E +
Sbjct: 294 LGLLKAIENGYQGALMAPTEILAAQHYEGIRTVCANLGITIELLTGSTTKKEKECIYEGL 353

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A G  H+IIGTHAL Q+++ ++ L LVI+DEQHRFGV+QR +L QK T PHVL+MTATPI
Sbjct: 354 ADGSIHMIIGTHALIQENVNFHNLGLVIIDEQHRFGVEQRARLQQKGTYPHVLIMTATPI 413

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRT+ L+  GD+ +S I E P GRKP+KT  +  +  D +       ++EG++ Y +CP 
Sbjct: 414 PRTMTLSVYGDLAVSLIKEMPPGRKPVKTYAVDSSYKDRLCTFFGKEMAEGRQVYVVCPL 473

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +EE ++ + ++  E +  L E+F  +  + ++HGRM   +K+ VM++F  G   LL++TT
Sbjct: 474 VEESEKLDLQAAEELYLELKEYFYKAYEVGLVHGRMKPSEKDEVMNAFHKGEISLLVSTT 533

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVG++V +A+I+ +E AE FGL+QLHQLRGRVGRG   S CIL+     +  S  RL 
Sbjct: 534 VIEVGVNVPNATIMCVEGAERFGLSQLHQLRGRVGRGAYQSYCILVSDSK-NDVSQERLK 592

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +++  +DGF +AE+DL  R  G++ G+ QSG+P   +A       +L  ARKD
Sbjct: 593 LMEQIQDGFELAEQDLLLRGSGQLFGLAQSGLPDLRVANIIKDIEILVEARKD 645


>gi|16078650|ref|NP_389469.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221309462|ref|ZP_03591309.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221313787|ref|ZP_03595592.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221318711|ref|ZP_03600005.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221322982|ref|ZP_03604276.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|3914611|sp|O34942|RECG_BACSU RecName: Full=ATP-dependent DNA helicase recG
 gi|2337816|emb|CAA74246.1| putative RecG protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633959|emb|CAB13460.1| branch migrating ATP-dependent DNA helicase involved in DNA
           recombination and repair [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 682

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 235/682 (34%), Positives = 374/682 (54%), Gaps = 23/682 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
              ++  +G+G +    L+++            DLL Y P  + D      + E+  +  
Sbjct: 6   QTSIANIKGIGPETEKTLNEL------GIYDISDLLNYFPYRYDDY-ELRDLEEVKHDER 58

Query: 70  VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           VT+ G +    S     ++  ++      G   IT + F R    LK     G  +TV+G
Sbjct: 59  VTVEGKVHSEPSLTYYGKKRNRLTFRLLVGHYLITAVCFNR--PYLKKKLSLGSVVTVSG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLP 186
           K  K +  I +        N        IE VYS+   ++V + ++ I +AL++    LP
Sbjct: 117 KWDKHRQTISVQ----ELKNGPHQEDKSIEPVYSVKENVTVKMMRRFIQQALTQYADSLP 172

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245
           + + + L +    P   +A   +H P      E    AR R  Y+E L  Q+ +   RK 
Sbjct: 173 DPLPEKLRKSYKLPDYYQALKAMHQPETR---EALKLARRRFVYEEFLLFQLKMQAFRKA 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + ++  GI      +   + ++++PF  T +Q   +++I  DMS   RM R+LQGDVGSG
Sbjct: 230 EREQTQGIRQRFSNEELMRFIKSLPFPLTNAQSRVLREITADMSSPYRMNRLLQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT VA IA+ AA+ +G Q  +M P  ILA+QH + +    +   + V ++T ++    R+
Sbjct: 290 KTAVAAIALYAAILSGYQGALMVPTEILAEQHADSLVSLFEKWDVSVALLTSSVKGKRRK 349

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LER+A G+  I++GTHAL QD +++  L LVI DEQHRFGV+QR KL  K   P VL 
Sbjct: 350 ELLERLAAGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLRNKGQDPDVLF 409

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  G++D+S I E PAGRK I+T  +  + +D ++  ++  L +G++A
Sbjct: 410 MTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLDRILAFVEKELKQGRQA 469

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP IEE  + + ++ ++ +N L + F     + ++HG++   +K+ VM  F    C+
Sbjct: 470 YIICPLIEESDKLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVMREFSANHCQ 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTV+EVG++V +A+I++I +A+ FGL+QLHQLRGRVGRGE  S CIL+  P  S+ 
Sbjct: 530 ILVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGEHQSFCILMADPK-SET 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGF ++E+DL+ R  G+  G KQSGMP+F +A        LE AR+DA
Sbjct: 589 GKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRALETARQDA 648

Query: 664 KHILTQDPDLTSVRGQSIRILL 685
            +++  D          +R  L
Sbjct: 649 ANLVASDAFWKEPEYAVLRDEL 670


>gi|255690507|ref|ZP_05414182.1| ATP-dependent DNA helicase RecG [Bacteroides finegoldii DSM 17565]
 gi|260623959|gb|EEX46830.1| ATP-dependent DNA helicase RecG [Bacteroides finegoldii DSM 17565]
          Length = 698

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 232/681 (34%), Positives = 369/681 (54%), Gaps = 21/681 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVT 71
           +    GVG + +  L+K +           DL++Y P  ++DR     I EI      + 
Sbjct: 9   IKFISGVGPQRAAILNKEL-----GIYSLHDLIYYFPYKYVDRSRVYYIHEIDGNMPYIQ 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I    +    ++R      +DGTG + L++F +  + +   +    +  + GK   
Sbjct: 64  LKGEILGFEAIGEGRQRRLTAHFSDGTGVVDLVWF-QGIKYILGKYKLHEEYIIFGKPTV 122

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEALSRL-PVL 185
              RI + HP     +   ++   ++  Y+         L+    +K++   + ++   L
Sbjct: 123 FNGRINVAHPDIDKSDELKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATVIQQIQEPL 182

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMR 244
           PE +   LL +     + EA   IH P      +    A+ RL ++EL   Q+ +L   +
Sbjct: 183 PETLSPKLLAEHHLMPLTEALRNIHFPANP---DLLRRAQYRLKFEELFYVQLNILRYAK 239

Query: 245 KQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + ++  G      G +      +N+PF  T +Q+  +K+I  D+    +M R+LQGDVG
Sbjct: 240 DRQRRYRGYVFEKVGDVFNTFYAKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRLLQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++TG++    
Sbjct: 300 SGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTGSIKGKK 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAPH 422
           R   L  +  G  HI+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L  +    PH
Sbjct: 360 REAILSGLLTGDVHILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSKNNQPPH 419

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T  GD+D+S I E P GRKPI TV    NR + +   ++  + EG
Sbjct: 420 VLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTVHQFDNRRESIYRSVQKQIDEG 479

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K+  M  F +G 
Sbjct: 480 RQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPKCKVCKVHGKMKPAEKDEQMQLFVSGE 539

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ +  L+
Sbjct: 540 AQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVTNYKLT 599

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIAR 660
           +++  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA       LL+  R
Sbjct: 600 EDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQYVR 659

Query: 661 KDAKHILTQDPDLTSVRGQSI 681
             A+ I+  D    +   + +
Sbjct: 660 TIAEEIVEHDFAAQNPENEIL 680


>gi|304316960|ref|YP_003852105.1| ATP-dependent DNA helicase RecG [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778462|gb|ADL69021.1| ATP-dependent DNA helicase RecG [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 682

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 240/681 (35%), Positives = 367/681 (53%), Gaps = 19/681 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG K +L L KI            D L Y+P  + +R     I  +    
Sbjct: 3   LSKSIQYVKGVGPKRALLLKKI------GIETVKDALEYYPKEYENREKIIPIDMLKIGE 56

Query: 69  IVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             T   YI+ +   +++++    KI + DG+G + L+++ +    +K  F  G +  + G
Sbjct: 57  KQTFKAYIAGKAREYKVKRLTITKIPVKDGSGAVELVWYNQ--PYIKGNFKLGEEYIING 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLP 186
           K+     +I + +P     +S ++N   I  +Y L  GLS  + + II   L   L  + 
Sbjct: 115 KVFYKYGQIYVENPVMDRSDSLNINAGRIVPIYKLTEGLSQKVIRSIIFNLLKEYLNDIE 174

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E  +++ L++ +   I  A   IH P  +K  E +   + RL + E    Q+ L L++ +
Sbjct: 175 EIFDENFLKEYNLLDIKSAIKNIHFPESSKMLERS---KYRLVFQEFFILQLGLTLIKNR 231

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           +       I       +     + F  T++QE A+ +IL DM     M R+LQGDVGSGK
Sbjct: 232 Y-NTDKAGIKFRRVDLKDFFSKLKFHLTQAQERALNEILDDMYSGKVMNRLLQGDVGSGK 290

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T++A  AM  AV+ G QA IMAP  ILA+QHY  +K+      I +E++TG++    +  
Sbjct: 291 TVIAAAAMYVAVKNGYQASIMAPTEILAKQHYFTLKELYDELDIKIELLTGSIGTKKKNI 350

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            +E I +G+  I++GTH+L ++++Q+  L L I DEQHRFGV+QR    +K     VL+M
Sbjct: 351 IIEEIKNGEIDILVGTHSLIEENVQFKNLGLAITDEQHRFGVRQRAVFKEKGEQTDVLVM 410

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L   GD+DIS I E P GRK I+T  I     D   + +   + +G++AY
Sbjct: 411 TATPIPRTLALMLYGDLDISVIDELPPGRKKIETYAISATLRDRAYKFVINEVKKGRQAY 470

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP IE+    N +S    +  +++       + ++HG MS  DK  VM+ F NG   +
Sbjct: 471 IVCPLIEDSNLINAKSAEVVYEEIYKGVFKEFRVGLVHGGMSSNDKNKVMNEFVNGKIDI 530

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG++V +AS+I+IENAE FGLAQLHQLRGRVGR    S CIL+ +   S   
Sbjct: 531 LVSTTVIEVGVNVPNASVIVIENAERFGLAQLHQLRGRVGRSSNQSYCILIAY-SYSDVV 589

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL V+  T DGF IAE+DL+ R  GE  G+KQ G+P+  +A       +L++A+K  +
Sbjct: 590 KKRLKVMTETNDGFKIAEKDLEIRGPGEFFGVKQHGLPELKLANIFEDIEILKLAQKAVE 649

Query: 665 HILTQDPDLTSVRGQSIRILL 685
             L  D  +T  R   ++  L
Sbjct: 650 KFLNND--ITFKRHDKMKAEL 668


>gi|255535594|ref|YP_003095965.1| ATP-dependent DNA helicase RecG [Flavobacteriaceae bacterium
           3519-10]
 gi|255341790|gb|ACU07903.1| ATP-dependent DNA helicase RecG [Flavobacteriaceae bacterium
           3519-10]
          Length = 696

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 237/696 (34%), Positives = 380/696 (54%), Gaps = 24/696 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS--E 66
           L  P+   +G+G + + F+               D L ++P  +ID+     I+++    
Sbjct: 3   LDTPIEFLKGIGPERAKFIK-----NVLGIAMVEDFLTFYPIRYIDKSKLYFINDLKEEP 57

Query: 67  ERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           E  + + G I+          ++       D TG + L++F R ++ +K+       I +
Sbjct: 58  EAEIQLKGKITDLQEMGYGNGKKRLSAKFRDETGTLELVWF-RYSKWMKDQLPLNTDIFI 116

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS-----LPTGLSVDLFKKIIVEALS 180
            GK+        M HP     N +      +  +Y         G++   F+ ++ E   
Sbjct: 117 FGKVNLFNGTFSMAHPEIEI-NEKKALSGSLLPIYPGSEKLSKRGINNKFFQVVLAEITR 175

Query: 181 RLPVL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            LP L  E +   L++K    S   AF  IH P   KDF     A  R+ ++E    Q+ 
Sbjct: 176 NLPALIQENLPDALMKKLKLISRIHAFYHIHFP---KDFNHFEHANRRIKFEEAFFFQLG 232

Query: 240 LLLMRKQFKKEIG-IPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRI 297
             L ++  K  +   P +  GK  +    + +PF  T +Q+  +K+I  DM +  +M R+
Sbjct: 233 YGLKKQHHKTSVVGNPFSKIGKNFKGFYEHSMPFELTNAQKRVLKEIRTDMKKPVQMNRL 292

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VAL+AM  A++ G Q+ +MAP  ILAQQH+  IK+ T+ T I + ++TG
Sbjct: 293 LQGDVGSGKTMVALLAMLIAMDNGFQSCLMAPTEILAQQHFNSIKELTEKTDIKIRLLTG 352

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-Q 416
           +   + R+   E +  G+  I++GTHA+ +D +++  L L I+DEQHRFGV QR +L  +
Sbjct: 353 STKTSDRKIIHEELLSGELTILVGTHAVLEDIVRFRNLGLAIIDEQHRFGVAQRARLWAK 412

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
              APH+L+MTATPIPRTL ++   D+D+S I E P GRKPI T          V    K
Sbjct: 413 NKIAPHILVMTATPIPRTLAMSFYSDLDVSVIDEMPVGRKPIITAHRREKDRLSVFRFAK 472

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMD 535
             + +G++ Y++ P IEE +  ++++++E ++ + E F      ++HGRM   +KE+ M 
Sbjct: 473 DEIEKGRQVYFVYPLIEESETLDYKNLLENYDHIVEFFEGKNATMLHGRMKPAEKEAAMK 532

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E S CIL+
Sbjct: 533 YFASGKAEIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGGEQSYCILM 592

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
               L+K S TR+  +  T DGF I+E D++ R  G+ILG +QSG+  F         ++
Sbjct: 593 TSDKLTKESRTRVKTMTETNDGFKISEVDMQLRGPGDILGTQQSGVVDFKKLDLVADGTI 652

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           +++A+K  + +L  DP L S   +S++   Y+ QY 
Sbjct: 653 IQVAKKTVEVLLKHDPHLQSDENRSLK-NYYVKQYK 687


>gi|332201120|gb|EGJ15191.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA47901]
          Length = 671

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 242/687 (35%), Positives = 386/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GEI     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEIVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEAWQEDPEWRMIALHLEKKEH 669


>gi|217961275|ref|YP_002339843.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH187]
 gi|229140501|ref|ZP_04269056.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST26]
 gi|217065342|gb|ACJ79592.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH187]
 gi|228643062|gb|EEK99338.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST26]
          Length = 682

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 227/681 (33%), Positives = 372/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLSRYKLLPRYEALRALHFPTGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +  +  QK +  +PF  T +Q   + +I++DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSEELQKFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++    RR+ 
Sbjct: 292 VVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVRRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAL 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  S+R  L 
Sbjct: 651 LVDSEAFWHNDQYASLRTYLD 671


>gi|322386106|ref|ZP_08059743.1| DNA helicase RecG [Streptococcus cristatus ATCC 51100]
 gi|321269875|gb|EFX52798.1| DNA helicase RecG [Streptococcus cristatus ATCC 51100]
          Length = 671

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 233/688 (33%), Positives = 381/688 (55%), Gaps = 27/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   L+   GVG K +    K+            DLL Y P  + D      + ++ +  
Sbjct: 3   LHQALTALPGVGPKSAEKFKKL------GLESLQDLLLYFPFRYEDF-KSKNVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              I+G ++  ++ Q    +  ++      GE+ +   +     L +    G  + + GK
Sbjct: 56  KAVISGIVATPANVQYYGYKRNRLRFTIKQGEVAIAVNFFNQPYLADKIELGATVAIFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    +    +D     ++ VY +  G+S     K+I  A  +    +L 
Sbjct: 116 WDKTKASLTGMK---VLAQVEDD----LQPVYRVAQGISQASLVKLIKVAFDQGLDRLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +   LL++       +A   +H PR   D      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPPVLLERYQLLERTQAVRAMHFPR---DLAEYKQALRRVKFEELFYFQMQLQVLKHE 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     + I  + K+  +    +PFS T++QE ++++IL D+     M R+LQGDVGSG
Sbjct: 226 TKDVSQGLAIPWQEKMLAQKKDALPFSLTEAQERSLEEILSDLQSPAHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AA  AG Q+ +M P  ILA+QH + + +      +   ++TG M  A RR
Sbjct: 286 KTVVAGLAMYAAYTAGYQSALMVPTEILAEQHLDSLAQLFPELNL--ALLTGGMKAAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  I  GQ  +++GTHAL Q+ + Y++L LVI+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 ETLAAIESGQVDMVVGTHALIQEGVVYHRLGLVIIDEQHRFGVDQRRILREKGNNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ +K  L++G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWMKKELAKGAQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y+I P IEE +  + ++ +     L  +F   + +A++HGRM + +KE++M  FK+G   
Sbjct: 464 YFISPLIEESEALDLKNAIALEEELKAYFANQAQVALLHGRMKNDEKEAIMQDFKDGKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATIMVIMDADRFGLSQLHQLRGRVGRGNKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYN 691
             I+  +P         + + L+L + +
Sbjct: 643 SQIVA-NPSWRQDANWHL-VSLHLEKRD 668


>gi|317504798|ref|ZP_07962756.1| DNA helicase RecG [Prevotella salivae DSM 15606]
 gi|315664073|gb|EFV03782.1| DNA helicase RecG [Prevotella salivae DSM 15606]
          Length = 700

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 243/687 (35%), Positives = 383/687 (55%), Gaps = 23/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE- 67
           L   +    GVG K    LSK +     N   + DLL Y+P  ++DR     I E++   
Sbjct: 5   LDQDIMYLPGVGPKRKEILSKEL-----NIQTWRDLLEYYPYKYVDRSKIYTIDELNGSI 59

Query: 68  RIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             V I G I     F    +R+      +DG G + L++F R T+ +   +    +  V 
Sbjct: 60  PFVQIKGKILSFEEFSNGTRRKRIVAHFSDGHGVVDLVWF-RGTQYIYKTYALNTEYIVF 118

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALSR 181
           GK     +R    HP     +   +N   ++  YS        G++    +K+    +SR
Sbjct: 119 GKPTVFGSRYQFAHPEIEKADELQLNEMGMQPYYSTTERMKTNGITSRTIEKLTKNLISR 178

Query: 182 LP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           LP   + E +   + +     S   AF  IH P+   + +     + RL ++EL   Q+ 
Sbjct: 179 LPKDAISETLPVFIQRPLHLISREAAFKGIHYPKSLDELQHA---QVRLKFEELFYVQLN 235

Query: 240 LLLMRK-QFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +L       +K  G      G+I     +N +PF  T +Q+  + ++  DM+   +M R+
Sbjct: 236 ILRYASDHRRKYRGYVFQRVGQIFNTFYQNNLPFDLTNAQKRVMHELRDDMASGKQMNRL 295

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL+ M  A++ G QA IMAP  ILA+QH   IK++ Q   + VE++TG
Sbjct: 296 LQGDVGSGKTLVALMTMLIAIDNGFQACIMAPTEILAEQHLTTIKEFLQGMDVRVELLTG 355

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +    R++ LE +A+G  +I++GTHA+ +D++Q+ +L L +VDEQHRFGV QR +L  K
Sbjct: 356 IVKGKKRQEVLEALANGDINILVGTHAVIEDTVQFARLGLAVVDEQHRFGVAQRARLWAK 415

Query: 418 ATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           +   PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N++  +   ++
Sbjct: 416 SENPPHILVMTATPIPRTLAMTIYGDLDVSIIDELPPGRKPIQTIHKFDNQMTSLYNGIR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             + +G++ Y + P I+E ++++ + + + + SL E F   SI+ +HG+M   +KE  M 
Sbjct: 476 QQIQQGRQVYIVFPLIKENEKNDLKDLEKGYESLLEIFPDFSISKVHGKMKPSEKEEEMR 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+
Sbjct: 536 RFVSGETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGAKQSYCILV 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDS 654
               +S+ +  R+ ++  T DGF IAE DLK R  G++ G +QSG+     IA       
Sbjct: 596 TSYKMSEETQKRIDIMCETNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQ 655

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSI 681
           L+++AR +A+ I+  DP    V  Q +
Sbjct: 656 LVQLARDEAQKIIEHDPTCQKVEYQLL 682


>gi|324327752|gb|ADY23012.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 682

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 226/681 (33%), Positives = 372/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLSRYKLLPRYEALRALHFPSGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +  +  Q+ +  +PF  T +Q   + +I++DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSEELQEFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++    RR+ 
Sbjct: 292 VVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVRRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAL 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  S+R  L 
Sbjct: 651 LVDSEAFWHNDQYASLRTYLD 671


>gi|206976738|ref|ZP_03237642.1| ATP-dependent DNA helicase RecG [Bacillus cereus H3081.97]
 gi|229197966|ref|ZP_04324680.1| ATP-dependent DNA helicase recG [Bacillus cereus m1293]
 gi|206745048|gb|EDZ56451.1| ATP-dependent DNA helicase RecG [Bacillus cereus H3081.97]
 gi|228585445|gb|EEK43549.1| ATP-dependent DNA helicase recG [Bacillus cereus m1293]
          Length = 682

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 226/681 (33%), Positives = 372/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLSRYKLLPRYEALRALHFPTGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +  +  Q+ +  +PF  T +Q   + +I++DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSEELQEFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++    RR+ 
Sbjct: 292 VVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVRRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAL 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  S+R  L 
Sbjct: 651 LVDSEAFWHNDQYASLRTYLD 671


>gi|255011369|ref|ZP_05283495.1| ATP-dependent DNA helicase RecG [Bacteroides fragilis 3_1_12]
 gi|313149184|ref|ZP_07811377.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
 gi|313137951|gb|EFR55311.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
          Length = 698

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 234/689 (33%), Positives = 370/689 (53%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +           DLL+Y P  ++DR     I EI
Sbjct: 1   MFDLATRDIKYLSGVGPQKAAVLNKELE-----IYSLHDLLYYFPYKYVDRSRIYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +F   ++R      +DGTG + L++F +  + +   +    + 
Sbjct: 56  DGNMPYIQLKGKILGFETFGEGRQRRLLAHFSDGTGVVDLVWF-QGIKYVTGKYKLHEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            + GK      RI + HP         ++   ++  Y+         L+    +K++   
Sbjct: 115 IIFGKPTVFNGRINVAHPDIDNPADLKLSSMGLQPYYNTTEKMKRSFLNSHAIEKMMATI 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + ++   LPE +   L+       + EA   IH P      E    A+ RL ++EL   Q
Sbjct: 175 IGQIQEPLPETLSPKLIADHHLMPLTEALRNIHFPSNP---ELLRKAQYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + +K  G      G+I      +N+PF  T +Q+  +++I QD+    +M 
Sbjct: 232 LNILRYAKDRQRKYRGYVFETVGEIFNTFYSKNLPFELTGAQKRVLREIRQDVGCGKQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHY+ IK+      + VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLIALDNGFQACMMAPTEILANQHYDTIKELLFGMDVRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G  HI+IGTHA+ +D++ +  L L ++DEQHRFGV QR +L 
Sbjct: 352 TGSVKGKKREAILAGLLTGDVHILIGTHAVIEDTVNFASLGLAVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   
Sbjct: 412 SKSIQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPISTIHQFDNRRESLYRS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ 
Sbjct: 472 VRKQIEEGRQIYIVYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CI
Sbjct: 532 MQLFISGEAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+    L++ +  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTTYKLTEETRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ I   DP       + +
Sbjct: 652 GQLLQYVRNIAEEITDADPGGVLPENEIL 680


>gi|322373680|ref|ZP_08048216.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C150]
 gi|321278722|gb|EFX55791.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C150]
          Length = 672

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 237/681 (34%), Positives = 378/681 (55%), Gaps = 31/681 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  +G G K +   +K+      +     DLL Y P  + D      I E+ +  
Sbjct: 4   LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYEDF-KSKSIFELMDGE 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      +  G   I + FF +    L +    G ++ + 
Sbjct: 57  KAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAISFFNQ--PYLVDKIEMGAEVAIF 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPV 184
           GK  + K+ +  +    +    +D     ++ VY +  G+S     K I  A     L +
Sbjct: 115 GKWDQKKSAVTGMK---VLAQVEDD----MQPVYHVAQGVSQAQLIKAIKAAFDSGALNL 167

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL K       EA   +H P   KD      A  R  ++EL   Q+ L +++
Sbjct: 168 LEESLPQVLLDKYRLMGRQEAVRAMHFP---KDLAEYKQALRRTKFEELFYFQMNLQVLK 224

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E   + I  +    +  +  +PF  T++Q+ ++ +IL DM     M R+LQGDVG
Sbjct: 225 AENKSETNGLAIAYDEAKIKDKIAALPFPLTEAQQRSLSEILADMKSGAHMNRLLQGDVG 284

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A +AM  A  AG Q+ +M P  ILA+QHY+ ++      ++ V ++T  M  A 
Sbjct: 285 SGKTVIASLAMYGAYTAGFQSALMVPTEILAEQHYQSLQGLF--PELEVVLLTSGMKAAD 342

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++ AL +I  G+A +I+GTH+L QD++ Y+ L LVI DEQHRFGV QR    +K   P V
Sbjct: 343 KKVALSKIESGEAQMIVGTHSLIQDAVTYHSLGLVITDEQHRFGVNQRRIFREKGDNPDV 402

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I + PAGRKPI T  +   ++D V+  +K  L +  
Sbjct: 403 LMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLTWIKGELEKDA 462

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++ V     L E F  S  +A++HGRM + +K+ +M  FK+  
Sbjct: 463 QVYFISPLIEESEALDLKNAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKDRK 522

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L+ +P  +
Sbjct: 523 SQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVLVANPK-N 581

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                R+  +  T DGF++AEEDLK R  GEI G +QSG+P+F +A      ++LE AR+
Sbjct: 582 DTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARR 641

Query: 662 DAKHILTQDPDL-TSVRGQSI 681
            A  I++ DP+   +   Q +
Sbjct: 642 VASQIVS-DPNWRENPEWQVL 661


>gi|315499871|ref|YP_004088674.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB
           48]
 gi|315417883|gb|ADU14523.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
           48]
          Length = 688

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 272/691 (39%), Positives = 391/691 (56%), Gaps = 11/691 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L P +  L+  +GVG K +  L + +           DLLF  PS  I      +
Sbjct: 1   MRPEILFPYYTSLTGLKGVGPKIAPHLIRHVG------PYVRDLLFTLPSQLI-FRPVSR 53

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+E    ++ T+   I  +   +   + P +I + D +G++ L +F+      +     G
Sbjct: 54  IAEARVGQVQTLCVTIGSYQ--KSAGKGPQRITVFDDSGQMQLTYFHAIRGF-EQQHPVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               ++GK++     + M HP Y+    +    PL E VY   + +S  L ++ +  AL 
Sbjct: 111 ETRWISGKVESFGASLQMNHPDYVVPLDKQDTIPLFETVYPATSAVSPRLMRRFVEAALH 170

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           R+P LPEW++ + L +      ++A    H P    D    + AR+RLAYDE LA Q+A+
Sbjct: 171 RVPDLPEWLDNETLGRLKISGFSDALRAAHAPVSEADLLPDATARKRLAYDEALAHQLAM 230

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
              ++  +    + I+     A K L  +PF+ T +Q  A+ DI  D+    RM R++QG
Sbjct: 231 KARKQHRQATPALIID-RHVWADKALSTLPFALTGAQTRALSDIRGDLRSGERMNRLIQG 289

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLV L+AM    EAG Q+V+MAP  ILA+QHYE       +  I   ++TG   
Sbjct: 290 DVGSGKTLVVLMAMIDVAEAGHQSVMMAPTEILARQHYEKSLPILSDMGISAVLMTGRDK 349

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R      +A G+  +I GTHA+FQ+ + +  L   ++DEQHRFGV QR +L  K  +
Sbjct: 350 GKEREAKRAAVASGETTMIFGTHAVFQEGVAFKSLQFCVIDEQHRFGVGQRQRLFLKGES 409

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            H L M+ATPIPRTL LT  G+ D+S + EKPAGR+PI T +IP  R+ EV +RLK  ++
Sbjct: 410 VHYLSMSATPIPRTLALTQYGESDLSVLDEKPAGRQPIHTAVIPRARLSEVFDRLKSAIA 469

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G +AYWICP +EE  ES+  +V  R  SL E     + ++HGR+   +KE V+  F +G
Sbjct: 470 AGSQAYWICPLVEESAESDLIAVEARHESLQEALGREVGLVHGRLPSAEKEDVVARFASG 529

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              LL ATTV+EVGIDV +ASIIIIE AE FGLAQLHQLRGRVGRG   S+CILLY  PL
Sbjct: 530 ELPLLCATTVVEVGIDVPNASIIIIEQAERFGLAQLHQLRGRVGRGSAKSACILLYDMPL 589

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + +  RL +L+ TEDGF IAE D K R EG++LG +QSG P +    P  H  L+  A 
Sbjct: 590 GQAAKARLELLRTTEDGFEIAEMDWKLRGEGDVLGARQSGFPAYRFVDPVAHADLIATAS 649

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           ++A++IL  +      R Q++ +L +L+ + 
Sbjct: 650 REAQYILQHEAQFPPQRRQALEVLRHLFDWR 680


>gi|329957261|ref|ZP_08297781.1| ATP-dependent DNA helicase RecG [Bacteroides clarus YIT 12056]
 gi|328522974|gb|EGF50077.1| ATP-dependent DNA helicase RecG [Bacteroides clarus YIT 12056]
          Length = 698

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 233/689 (33%), Positives = 375/689 (54%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +         F DLL+Y P  ++DR     I EI
Sbjct: 1   MFDLTTRDIKYLSGVGPQRASVLNKEL-----GIFSFHDLLYYFPYKYVDRSRIYYIQEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +    ++R      +DGTG + L++F +  + L   +   ++ 
Sbjct: 56  DGTMPYIQLKGEILGFETAGEGRQRRLIAHFSDGTGVVDLIWF-QGIKYLIGKYKVHQEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            V GK      RI + HP     +   ++   ++  Y+         L+    +K++   
Sbjct: 115 IVFGKPSVFNGRINIAHPDIDPASELKLSAMGLQPYYNTTEKMKRSSLNSHAMEKMMKNI 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + +L   LPE +   LL +     + +A   IH P      +    A  RL ++EL   Q
Sbjct: 175 VRQLNEPLPETLSPALLAEHHLMPLTDALLNIHFPVSP---DALRKAEYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + +K  G      G+       RN+PF  T +Q+  +K+I +D+    +M 
Sbjct: 232 LNILRYAKDRQRKYRGYVFEKIGETFNGFYSRNLPFELTNAQKRVLKEIRRDLGSGKQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE I++      + VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLIALDNGYQACMMAPTEILANQHYETIRELLYGMDVRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G   I+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L 
Sbjct: 352 TGSIKGKRREAILSGLLTGDVQILIGTHAVIEDTVNFASLGLVVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    +    +   
Sbjct: 412 TKSVQPPHILVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDSHRVSLYRS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ 
Sbjct: 472 VRKQIDEGRQVYIVYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CI
Sbjct: 532 MQLFVSGEAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+    L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTGYKLAEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R+ A+ I+ +DP+ +    + +
Sbjct: 652 GQLLQYVREVAQAIVDKDPNASLPENEIL 680


>gi|281421376|ref|ZP_06252375.1| ATP-dependent DNA helicase RecG [Prevotella copri DSM 18205]
 gi|281404448|gb|EFB35128.1| ATP-dependent DNA helicase RecG [Prevotella copri DSM 18205]
          Length = 698

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 237/685 (34%), Positives = 377/685 (55%), Gaps = 21/685 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +    GVG K    LSK +         + DLL Y+P  ++DR     ISE++ + 
Sbjct: 5   LDQDIMFLPGVGPKKKEILSKEL-----GINSYSDLLEYYPYKYVDRSKVFHISELNADM 59

Query: 69  I-VTITGYISQHSSFQLQKRRPYKI-LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             V + G I  +      KR    +   +DG G   L++ YR  + +   +  G +  V 
Sbjct: 60  PFVQLKGKILSYDEIDTGKRNKLLVAHFSDGYGVADLIW-YRGAQYIMKTYKVGTEYLVF 118

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGL-----SVDLFKKIIVEALSR 181
           GK      R    HP      +  ++   ++  YSL   L     +    +K+  + ++ 
Sbjct: 119 GKPTVFNGRFQFTHPDMDDATNLQISEMGMQPYYSLTENLRKRGYTSRSIEKMTKQLVTI 178

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-AL 240
           LP LPE +   ++ +    S   A  +IH P   ++ +    A+ RL ++EL   Q+  +
Sbjct: 179 LPPLPETLPNHIVDRLHLVSRDAAIRMIHYPHSHQEMQ---KAQVRLKFEELFYVQLNII 235

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
                Q +K  G   N    I       ++PF  T +Q+  + +I  DM    +M R+LQ
Sbjct: 236 RYATDQRRKFRGYVFNRIADIFNGFYAHHLPFELTGAQKRVMHEIRADMCSGRQMNRLLQ 295

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVAL+ M  A++ G QA +MAP  ILA+QH + I  + Q   I VE++TG +
Sbjct: 296 GDVGSGKTLVALMTMLIALDNGYQACMMAPTEILAEQHLQTICDFLQGMDIRVELLTGIV 355

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R K L  +A G   I++GTHA+ +D + + +L + ++DEQHRFGV QR KL  K+ 
Sbjct: 356 KGKKREKILADLATGDIQILVGTHAILEDPVVFRRLGVAVIDEQHRFGVAQRAKLWNKSE 415

Query: 420 A-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+     ++  + + ++  
Sbjct: 416 NPPHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTLHKFDTQLTSLYQSIRRQ 475

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           ++ G++ Y + P I+E ++S+ +++ E + +L + F    ++ IHG+M   +KE  M+ F
Sbjct: 476 INLGRQVYIVFPLIKESEKSDLKNLEEGYETLKQAFPEFKLSKIHGKMKSTEKEVEMEQF 535

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ +
Sbjct: 536 VKGETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGCDQSYCILVTN 595

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLL 656
             LS+ +  R+ ++ +T DGF IAE DLK R  G++ G +QSGM     IA       L+
Sbjct: 596 YKLSEETRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGMAFDLKIANIARDGQLV 655

Query: 657 EIARKDAKHILTQDPDLTSVRGQSI 681
           ++AR +A+ I+  DP+  +     +
Sbjct: 656 QLARTEAQEIIDNDPECNAPHNALL 680


>gi|228922609|ref|ZP_04085909.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837038|gb|EEM82379.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 682

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 228/681 (33%), Positives = 372/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G I      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKIHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLKLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLGRYKLLPRYEALRALHFPVGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + A+  A  Q  +M P  ILA+QHY+ + +   +  I VE++T ++  A RR+ 
Sbjct: 292 VVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGIKVELLTSSVKGARRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAI 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  ++R  L 
Sbjct: 651 LVDSEAFWHNDQYAALRTYLD 671


>gi|312868533|ref|ZP_07728733.1| ATP-dependent DNA helicase RecG [Streptococcus parasanguinis F0405]
 gi|311096278|gb|EFQ54522.1| ATP-dependent DNA helicase RecG [Streptococcus parasanguinis F0405]
          Length = 671

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 239/688 (34%), Positives = 383/688 (55%), Gaps = 31/688 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PLS   GVG K +    K+            DLL Y P  + D   R  + E+ +  
Sbjct: 3   LHQPLSVLPGVGPKSAEKFKKL------GIETLEDLLLYFPFRYEDFKTR-NVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              I+G ++  ++ Q    KR   +  +  G   I + FF +    L +     + + + 
Sbjct: 56  KAVISGVVATPANVQYYGYKRNRLRFSIKQGDQVIAVNFFNQ--PYLADKIEVQQTVAIF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPV 184
           GK  K K  +  +    +    +D     ++ VY +  G+S +   K+I  A  +    +
Sbjct: 114 GKWDKAKGSLTGMK---LLAQVEDD----LQPVYRVTQGVSQNSLVKLIKIAFDQGLDQL 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E +   L  +    S ++A   +H P   KD      A  R+ ++ELL  Q+ L +++
Sbjct: 167 LEENVPHILRDRYQLMSRSQAVQAMHFP---KDLAEYKQALRRVKFEELLFFQLQLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++       I +  + +   +  + +PF  T++QE+++ +IL DM+    M R+LQGDVG
Sbjct: 224 EENHDASQGISLAWDPEKLAERKKQLPFELTQAQENSLNEILTDMASPYHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM AA+ AG QA +M P  ILA+QH E ++    +    + ++TG +  A 
Sbjct: 284 SGKTVVAGLAMYAALSAGKQAALMVPTEILAEQHKESLQNLFPDLP--IALLTGGLKAAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R+ LE IA G+A +I+GTHAL Q+ + Y  L LVI+DEQHRFGV QR  L +K   P V
Sbjct: 342 KREVLEEIASGKAQLIVGTHALIQEGVHYQDLGLVIIDEQHRFGVSQRRILREKGQNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRK I T  +   +++ V++ L   L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKEIITRWVKHEQLEVVLDWLVKELGKGS 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY+I P IEE +  + ++ +     L   F   + ++++HG+M   +K+++M +FK   
Sbjct: 462 QAYFISPLIEESEALDLKNALALQEELETFFGQRARVSLLHGKMKSEEKDAIMQAFKEHQ 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  IL+ +P  +
Sbjct: 522 VDVLVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGNKQSYAILVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 DSGKQRMKIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADLVEDYPILEEARK 640

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQ 689
            A  I+   PD        + + LYL +
Sbjct: 641 VASKIVAT-PDWREHPDWHL-LSLYLEK 666


>gi|229180131|ref|ZP_04307475.1| ATP-dependent DNA helicase recG [Bacillus cereus 172560W]
 gi|228603340|gb|EEK60817.1| ATP-dependent DNA helicase recG [Bacillus cereus 172560W]
          Length = 682

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 227/681 (33%), Positives = 373/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G I      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKIHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLKLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLGRYKLLPRYEALRALHFPVGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I++ A+  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR+ 
Sbjct: 292 VVAAISLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGARRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAI 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  ++R  L 
Sbjct: 651 LVDSEAFWHNDQYAALRTYLD 671


>gi|229162791|ref|ZP_04290748.1| ATP-dependent DNA helicase recG [Bacillus cereus R309803]
 gi|228620673|gb|EEK77542.1| ATP-dependent DNA helicase recG [Bacillus cereus R309803]
          Length = 685

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 229/693 (33%), Positives = 376/693 (54%), Gaps = 26/693 (3%)

Query: 1   MRPSFLNP-LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP 59
           MR   LN  +  P++  +G+G + S  L ++             LL + P  + D     
Sbjct: 1   MR--ILNEGVQVPVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMK 51

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVF 117
            ++E+  +  VT+ G +      Q   ++  ++ +    G   IT + F R     K   
Sbjct: 52  DLAEVKHDERVTVEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKL 109

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
                +T+TGK  + +  I +       H    V    +E VYS+   L+V   ++ I +
Sbjct: 110 KLDEAVTITGKWDQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQ 165

Query: 178 ALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL      + E +   LL +       EA   +H P   +D      AR R  Y+E    
Sbjct: 166 ALKEYGDSIVEVLPDGLLSRYKLLPRYEALRALHFPVGQEDL---KQARRRFVYEEFFLF 222

Query: 237 QIALL-LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ +  L + + +   G    +     Q+ +  +PF  T +Q   + +I++DM+   RM 
Sbjct: 223 QLKMQTLRKMERENSKGTKKEIPSAELQEFIDTLPFPLTGAQRRVVDEIMKDMTSPYRMN 282

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT+VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++
Sbjct: 283 RLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELL 342

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           T ++    RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L 
Sbjct: 343 TSSVKGVRRREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLR 402

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K  +P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  +
Sbjct: 403 EKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFV 462

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533
           +  + +G++AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +
Sbjct: 463 EKEIKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEI 522

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F     ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+
Sbjct: 523 MGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCL 582

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+  P  S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A      
Sbjct: 583 LIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDY 641

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             LE AR+DA  ++  +    + +  ++R  L 
Sbjct: 642 RALETARQDAAILVDSEAFWHNDQYAALRTYLD 674


>gi|326565924|gb|EGE16085.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 103P14B1]
 gi|326575426|gb|EGE25351.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 101P30B1]
 gi|326577957|gb|EGE27821.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis O35E]
          Length = 698

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 250/675 (37%), Positives = 374/675 (55%), Gaps = 30/675 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++   GVG+  +  L+++         R  D+L + P  + DR     I ++S    V 
Sbjct: 11  PVTALSGVGQALAGRLAEL------GIHRIFDMLLHLPRDYEDRSRVIAIKDVSHGMSVL 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G ++       + R    + L D TGEITL FF+    +L  +   G KITV G+IK 
Sbjct: 65  VAGVVTWVE----KNRTGLSVTLEDATGEITLRFFHTYPSLLTTMM-VGAKITVFGEIKV 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWIE 190
            +    M HP Y    ++     L+  +Y    G++ +  ++++  AL+ +       + 
Sbjct: 120 GRYGTQMSHPDYHLTGTKKFESGLL-PIYPTIKGINQNKLRQLVRLALTAVQQDGIHGLS 178

Query: 191 KDLLQKKSFP---SIAEAFNIIHNPRKAKDF-----------EWTSPARERLAYDELLAG 236
           +  L+         +  A   +H P    D            + T PA  R+  +EL+A 
Sbjct: 179 ETQLKAAGVELTGDLLPALKAVHLPEIHADIFSQTALLAGLKDRTHPACRRIIIEELVAH 238

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q++ L  R    +      +    +A++++  +PF  T +Q+  I + + DM+    MLR
Sbjct: 239 QVSFLFRRNHIYQYKAPKCDPISPLAKQLVAGLPFELTAAQKRVIDEAVSDMATSRPMLR 298

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVG+GKTLVA +    A+++G Q  +MAP  ILA+QH    +K+ +   I V  + 
Sbjct: 299 LIQGDVGAGKTLVAAMTACYALDSGWQVAVMAPTEILAEQHLINFQKWFEPLGIGVGWLA 358

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G      R  AL+ I   Q  I++GTHALF D++ + KL LVI+DEQHRFGV+QRL+LT 
Sbjct: 359 GKQTAKERTAALDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQHRFGVEQRLRLTN 418

Query: 417 KATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           K  +   PH L MTATPIPRTL ++  GD+D+S I E P  R PI TV I  +R DEVIE
Sbjct: 419 KGVSGGAPHQLAMTATPIPRTLAMSMYGDMDVSIIDELPPKRTPITTVTINRDRRDEVIE 478

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           R++     GK+AYW+CP +EE    + +S    +  L +       +IHG+M   DK++V
Sbjct: 479 RIQNNCQAGKQAYWVCPLVEESSALDVQSAQLTYEDLSDRLDIRTGLIHGKMKAADKQAV 538

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +FK G   LLIATTVIEVG+DV +AS+++IENAE  GL+QLHQLRGRVGRG   S C+
Sbjct: 539 MQAFKAGDIDLLIATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRVGRGSAKSFCV 598

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLS     RL+VLK++ DGF+IA++DL+ R  GE+LG +Q+G   + +A     +
Sbjct: 599 LLYQLPLSPTGIERLNVLKDSTDGFVIAQKDLELRGAGELLGKRQTGDMGYYLADIVRDE 658

Query: 654 SLLEIARKDAKHILT 668
           +LLE A   A  ++ 
Sbjct: 659 ALLEAAGDIACQLIK 673


>gi|56750479|ref|YP_171180.1| ATP-dependent DNA helicase RecG [Synechococcus elongatus PCC 6301]
 gi|81299888|ref|YP_400096.1| ATP-dependent DNA helicase RecG [Synechococcus elongatus PCC 7942]
 gi|56685438|dbj|BAD78660.1| ATP-dependent DNA helicase RecG [Synechococcus elongatus PCC 6301]
 gi|81168769|gb|ABB57109.1| ATP-dependent DNA helicase RecG [Synechococcus elongatus PCC 7942]
          Length = 817

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 233/685 (34%), Positives = 389/685 (56%), Gaps = 28/685 (4%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L   L+  +GVG + +  L ++            DLL ++P +++D   +  I  +   
Sbjct: 120 ALDQALTYLKGVGPRVAAQLERL------ELRTVRDLLHHYPRNYVDYARQVNIRALEPG 173

Query: 68  RIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNV 116
              T+ G + + + F   +     IL   + DG+G++ L  F+  T           + +
Sbjct: 174 ETATLIGAVQRCTCFTSPRNAKLTILELVVRDGSGQLRLSRFFMGTRYSGRGWQEQQRRL 233

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD-----VNFPLIEAVYSLPTGLSVDLF 171
           +  G  I  +G +K+ K  + + +P     +S D     +    I  +Y L  G++ D  
Sbjct: 234 YPPGTMIAASGLVKRSKYGVTLDNPEIEVLDSPDSPIASLKVGRIVPIYPLTEGVAADTL 293

Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
           ++ IV+AL     L + +   L ++     + +A   IH P   +  +     R RL +D
Sbjct: 294 RRAIVQALPAAEQLRDPLPTVLREQHQLLVLNQAIAAIHFPETPELLQQA---RRRLVFD 350

Query: 232 ELLAGQIALLLMRKQFKKEIGI-PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           E L  Q+ LL  R + +       +   G++  +  + +PF  T +Q+  + DIL D+ Q
Sbjct: 351 EFLYLQLGLLQRRARQRAAAAAAVLAPTGELIDRFYQLLPFQLTGAQQRVVNDILTDLQQ 410

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              M R++QGDVGSGKT+VA++++ AA++AG Q  +MAP  +LA+QHY  +  +     +
Sbjct: 411 PWPMNRLVQGDVGSGKTVVAIVSLLAAIQAGYQGALMAPTEVLAEQHYRKLVDWCTQLHL 470

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            VE++TG+   A RR+    +A G+  +++GTHAL QD + +  L LV++DEQHRFGV Q
Sbjct: 471 PVELLTGSTRAAKRREIQRSLATGELPLLVGTHALIQDPVDFQNLGLVVIDEQHRFGVAQ 530

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           R KL QK   PHVL MTATPIPRTL LT  GD+++S+I E P GR+PI+T  +  +    
Sbjct: 531 RAKLQQKGVNPHVLTMTATPIPRTLALTLHGDLEVSQIDELPPGRQPIQTTALGPSDRHH 590

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDID 529
             + ++  +++G++ Y + P +EE ++ + RS +E +  L + F    I ++HGRMS  +
Sbjct: 591 AHDLMRREIAQGRQVYVVLPLVEESEKLDLRSAIEEYQRLSQVFPEFQIGLLHGRMSSAE 650

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K++ + +F++    +L++TTV+EVG+DV +A++++IE+AE FGL+QLHQLRGRVGRG   
Sbjct: 651 KDAAIAAFRDRQTDILVSTTVVEVGVDVPNATVMLIEHAERFGLSQLHQLRGRVGRGAAR 710

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+     S+ +  RL V++ ++DGF IAE DL+ R  G++LG +QSG+P F +A  
Sbjct: 711 SYCLLM-SASRSETAQQRLKVMEQSQDGFFIAEMDLRLRGPGQVLGTRQSGLPDFALASL 769

Query: 650 ELHDSLLEIARKDAKHILTQDPDLT 674
                +L++AR  A+ ++ QDP+LT
Sbjct: 770 VEDQDVLDLARTTAEQLIEQDPELT 794


>gi|228909680|ref|ZP_04073503.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis IBL 200]
 gi|228849969|gb|EEM94800.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis IBL 200]
          Length = 682

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 226/681 (33%), Positives = 372/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLTLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLGRYKLLPRYEALRALHFPVGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVNEILKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + A+  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR+ 
Sbjct: 292 VVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGARRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAI 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  ++R  L 
Sbjct: 651 LVESEAFWHNDQYAALRTYLD 671


>gi|116516080|ref|YP_816963.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae D39]
 gi|116076656|gb|ABJ54376.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae D39]
          Length = 671

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 241/687 (35%), Positives = 385/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEAWQEDPEWRMIALHLEKKEH 669


>gi|30021943|ref|NP_833574.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 14579]
 gi|228960071|ref|ZP_04121735.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047542|ref|ZP_04193132.1| ATP-dependent DNA helicase recG [Bacillus cereus AH676]
 gi|229111326|ref|ZP_04240879.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock1-15]
 gi|229129131|ref|ZP_04258104.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-Cer4]
 gi|229146426|ref|ZP_04274797.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST24]
 gi|229152054|ref|ZP_04280249.1| ATP-dependent DNA helicase recG [Bacillus cereus m1550]
 gi|296504350|ref|YP_003666050.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis BMB171]
 gi|29897499|gb|AAP10775.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 14579]
 gi|228631403|gb|EEK88037.1| ATP-dependent DNA helicase recG [Bacillus cereus m1550]
 gi|228637059|gb|EEK93518.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST24]
 gi|228654368|gb|EEL10233.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-Cer4]
 gi|228672102|gb|EEL27393.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock1-15]
 gi|228723789|gb|EEL75144.1| ATP-dependent DNA helicase recG [Bacillus cereus AH676]
 gi|228799587|gb|EEM46540.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296325402|gb|ADH08330.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis BMB171]
          Length = 682

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 227/681 (33%), Positives = 372/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        IT+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLKLDETITITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLGRYKLLPRYEALRALHFPVGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSAELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + A+  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR+ 
Sbjct: 292 VVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGARRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAI 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  ++R  L 
Sbjct: 651 LVDSEAFWHNDQYAALRTYLD 671


>gi|116628420|ref|YP_821039.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus LMD-9]
 gi|116101697|gb|ABJ66843.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus LMD-9]
          Length = 672

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 241/685 (35%), Positives = 384/685 (56%), Gaps = 31/685 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  +G G K +   +K+      +     DLL Y P  + D      I E+ +  
Sbjct: 4   LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYEDF-KSKSIFELMDGE 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      +  G   I + FF +    L + F  G ++ + 
Sbjct: 57  KAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAINFFNQ--PYLVDKFEVGAEVAIF 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPV 184
           GK  + K+ +  +    +  + +D     ++ VY +  G+S     K I  A     L +
Sbjct: 115 GKWDRKKSAVTGMK---VLAHVEDD----MQPVYHVAQGVSQAQLIKAIKVAFDSGALNL 167

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + L+ K       EA  ++H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 168 LEESLPQVLMDKYRLMGRQEAVRVMHFP---KDLAEYKQALRRIKFEELFYFQMNLQVLK 224

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E   + I+ +    +  +  +PF  TK+QE ++ +IL DM     M R+LQGDVG
Sbjct: 225 AENKSETNGLAISYDEVKIKAKIATLPFPLTKAQERSLSEILADMKSGAHMNRLLQGDVG 284

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A +AM  A  AG Q+ +M P  ILA+QHY+ +K      ++ V ++T  M  A 
Sbjct: 285 SGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSLKGLF--PELKVVLLTSGMKMAD 342

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++ AL +I  G+A +I+GTH+L QD++ Y+KL LVI DEQHRFGV QR    +K   P V
Sbjct: 343 KKVALSKIESGEAQMIVGTHSLIQDAVIYHKLGLVITDEQHRFGVNQRRIFREKGDNPDV 402

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I + PAGRK I T  +   ++D V+  +K  L +  
Sbjct: 403 LMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKTIITRWVKHEQLDTVLTWIKSELEKDA 462

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++ V     L E F  S  +A++HGRM + +K+ +M  FK+  
Sbjct: 463 QVYFISPLIEESESLDLKNAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKDKK 522

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L+ +P  +
Sbjct: 523 SQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVLVANPK-N 581

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                R+  +  T DGF++AEEDLK R  GEI G +QSG+P+F +A      ++LE AR+
Sbjct: 582 DTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARR 641

Query: 662 DAKHILTQDPDL-TSVRGQSIRILL 685
            A  I++ DP+   +   Q +   L
Sbjct: 642 VASQIVS-DPNWRENPDWQVLEAHL 665


>gi|159903548|ref|YP_001550892.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
           9211]
 gi|159888724|gb|ABX08938.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT
           9211]
          Length = 815

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 244/701 (34%), Positives = 390/701 (55%), Gaps = 33/701 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + LST +G+G K    L+ +            DLL ++P  ++D     +IS +    
Sbjct: 116 LDSTLSTVKGIGSKTIELLASL------GIFTIRDLLVHYPRDYVDYSQLKRISSLEAGE 169

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM------LKN--VF 117
             TI   I + + F   +     +L   + D TG I L  F+           +K    +
Sbjct: 170 TATIVASIRRTNYFTSPRNPNLSVLELLIQDSTGRIKLTKFFAGRRFSNRGYLMKQVSQY 229

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ-----DVNFPLIEAVYSLPTGLSVDLFK 172
             G  + V+G +K+       + P      +Q       +   +  +Y L  GL+    +
Sbjct: 230 PTGSTVAVSGLVKEGSYGKCFIDPIIEVLENQGTSIKSKSIGRLIPIYPLTEGLTAVRIR 289

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           ++    L       + + ++ +   S  SI  A N IH P      E  + AR R+ +DE
Sbjct: 290 RVFDLVLPFAAFWKDPLPQERISHHSLMSIQNAMNQIHQPNN---LESLNAARRRIVFDE 346

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKI---AQKILRNIPFSPTKSQESAIKDILQDMS 289
            L  Q+ALL  R  F+K+    +    +I     +    +PFS T  Q+  + +I  D+ 
Sbjct: 347 FLCLQLALLRKRNLFRKKPAPQLKKVNQINSLTSQFYSLLPFSFTNEQKRVLHEIESDLE 406

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
               M R+LQGDVGSGKT+VA+ A+  AV++G Q  +MAP  +LAQQHY+ + K+     
Sbjct: 407 SSEPMARLLQGDVGSGKTVVAIAALLYAVDSGWQGALMAPTEVLAQQHYKNLCKWLPQLH 466

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + V++ITG+ P + R++ L+ ++ G  +II+GTHAL +DS+ + +L LV+VDEQHRFGV 
Sbjct: 467 VTVDLITGSTPNSRRKQILDDLSTGGVNIIVGTHALIEDSVSFSRLGLVVVDEQHRFGVY 526

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR  L +K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR+ IKT ++  ++ +
Sbjct: 527 QRDLLLRKGLQPHLLTMTATPIPRTLALSIHGDLDVSQINEMPPGREKIKTSMLQFSQRN 586

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSD 527
           +V + ++  + +  + Y++ P +EE ++   RS V+ ++ L        ++ ++HGRMS 
Sbjct: 587 KVFDLIRAHIKKRHQVYFVLPLVEESEKIELRSAVDVYHELSNDLFQEFNVGLLHGRMSS 646

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
           +DK S ++SF +G   +L++TTVIEVG+DV +A++++I++A+ FGLAQLHQLRGRVGRG 
Sbjct: 647 LDKNSTINSFVSGEVDILVSTTVIEVGVDVPNATLMVIDHADRFGLAQLHQLRGRVGRGA 706

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S CIL+     S +S  +L  L  + DGF I+E DL+ R  G++LG +QSG+P F +A
Sbjct: 707 SFSECILIDSGKNS-DSRKKLEYLVGSTDGFEISEIDLRMRGPGQVLGTRQSGLPDFALA 765

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLY 688
                  +LE+ARK+A +IL  DP+L S +   ++  L L+
Sbjct: 766 NLVNDSHVLELARKEALYILNSDPELNSYK--LLKDNLDLH 804


>gi|74316487|ref|YP_314227.1| ATP-dependent DNA helicase RecG [Thiobacillus denitrificans ATCC
           25259]
 gi|74055982|gb|AAZ96422.1| ATP-dependent DNA helicase RecG [Thiobacillus denitrificans ATCC
           25259]
          Length = 678

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 236/662 (35%), Positives = 360/662 (54%), Gaps = 15/662 (2%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           V    +  L+K+         R  DL+ + P  + D      I E+   +   +   + +
Sbjct: 11  VSPALAAKLAKL------GLKRDSDLILHLPLRWEDETRITPIGELLPGQTAQVQACV-R 63

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
            +    + RR   +++ D +G + + F +     LK  F  G +    G+++     + M
Sbjct: 64  EAKVTYRPRRMLTLIVEDDSGVLGVRFLHFYPSHLK-AFQAGARFRFNGEVRGGFLGLEM 122

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           VHP +   +        +  VY    GL     +K+I  AL+    + E +  +  ++  
Sbjct: 123 VHPRFAKADDDTPLPAGLTPVYPTTAGLGQASLRKLIERALAA--PIDETLPPEWREELG 180

Query: 199 FPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
              +  +  ++H P              PA +RLA+DELLA Q++L   R+  +    +P
Sbjct: 181 LAELESSIRLLHQPPPGCAQHALESRAHPAWQRLAFDELLAQQLSLATSRQAREARTTLP 240

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +    ++    +  + F  T +Q  A ++I  D++  + M R+LQGDVGSGKT+VA +A 
Sbjct: 241 LPHRRRLTAAFVDTLAFELTAAQARAWQEISTDLAAPHPMRRLLQGDVGSGKTVVAALAC 300

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             AVE G QA  MAP  ILA+QHY  +        +    ++G+  +A R  A   IA G
Sbjct: 301 LQAVENGMQAAFMAPTEILAEQHYRKLAPTLAALGVRSGWVSGSQRRAEREAAWRAIAAG 360

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           +A +  GTHALFQ++  + +L LV+VDEQHRFGV QRL L  K T PH L+M+ATPIPRT
Sbjct: 361 EADLAFGTHALFQEAGNFCRLGLVVVDEQHRFGVGQRLALMGKGTEPHQLMMSATPIPRT 420

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PI T ++   R DEV+ R++     G +AYW+CP IEE
Sbjct: 421 LAMSFFADLDVSAIDELPPGRTPIVTKLVSAARRDEVLARVRDACVGGGQAYWVCPLIEE 480

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            ++   ++  + + +L E      I ++HGR+   DK+SVM +F++    LL+ATTVIEV
Sbjct: 481 SEKLQLQTAEDTYGTLVEQLPGLRIGLVHGRLKAEDKQSVMAAFQSHEIDLLVATTVIEV 540

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LLY  PLS+ +  RL V+  
Sbjct: 541 GVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGARESVCVLLYETPLSELARARLKVIFE 600

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
             DGF IA +DL  R  GE+LG +QSG+P    A  E   +LLE AR  A+  L + P++
Sbjct: 601 HSDGFEIARQDLLLRGPGELLGQRQSGLPMLRFADLERDVALLERARDLAQRCLRERPEV 660

Query: 674 TS 675
            +
Sbjct: 661 AA 662


>gi|323705491|ref|ZP_08117066.1| ATP-dependent DNA helicase RecG [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535393|gb|EGB25169.1| ATP-dependent DNA helicase RecG [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 682

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 229/681 (33%), Positives = 368/681 (54%), Gaps = 19/681 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG K +L L +I            D L Y+P  + DR     I  +    
Sbjct: 3   LSKPIQYVKGVGPKRALLLKRI------GIETVKDALEYYPREYEDREKIIPIDMLKIGE 56

Query: 69  IVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             T   YI+ +   ++++     KI + DG+G + L+++ +    +KN F  G +  + G
Sbjct: 57  KQTFKAYIAGKAREYRIKGLIITKIPVKDGSGALELVWYNQ--PYVKNNFKLGEEYIING 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLP 186
           +I     ++ + +P     +  ++N   I  +Y L  GLS  + + II   L   +  + 
Sbjct: 115 RISYKYGQVYVENPTMDKSDVLNLNAGRIVPIYKLTDGLSQKILRNIIYSLLKEYINEIE 174

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E  ++D L + +   I +A   IH P   +  E     + RL + E    Q+ L L++ +
Sbjct: 175 EIFDEDFLTEYNLLGIRKAIKNIHFPESPEMLERA---KYRLIFQEFFILQLGLNLIKNR 231

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           +  +    I  +     + L N+ F+ TK+Q+ A+ +IL DM     M R+LQGDVGSGK
Sbjct: 232 YDIDKSG-IKFKHVDLSEFLNNLKFTFTKAQDKALNEILNDMYSGKVMNRLLQGDVGSGK 290

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T++A  AM  AV+ G QA I+ P  ILA+QHY  +K+      +  E++TG++    +  
Sbjct: 291 TIIAAAAMYVAVKNGYQASILTPTEILAKQHYLSLKELYDKLGVKTELLTGSISNKRKNL 350

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            +E++ +G+  +++GTH+L +D++Q+  L L I DEQHRFGV+QR     K    +VL+M
Sbjct: 351 IIEKVKNGEIDVLVGTHSLIEDNVQFKNLGLAITDEQHRFGVRQRAMFKNKGNQTNVLVM 410

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L   GD+DIS I E P GRK ++T  I     +   + +   + +G +AY
Sbjct: 411 TATPIPRTLALMLYGDLDISIIDELPPGRKKVETYAISGALRERAYKFVVNEIKKGHQAY 470

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP IE+ +    +S    +  +++       + ++HG M+  DK+ VM  F +G   +
Sbjct: 471 IVCPLIEDSQTIYAKSAEVVYEEIYKGVFKDFRVGLVHGGMNSNDKDKVMSEFVDGEIDI 530

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG++V +A++I+IENAE FGLAQLHQLRGRVGR    S CIL+ +   S   
Sbjct: 531 LVSTTVIEVGVNVPNATVIVIENAERFGLAQLHQLRGRVGRSSHQSYCILIAY-SYSDVV 589

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL V+  T DGF IAE+DL+ R  GE  G+KQ G+P+  +A       +L++A+K  +
Sbjct: 590 KKRLKVMTETNDGFKIAEKDLEIRGPGEFFGVKQHGLPELKLANLFDDIEILKLAQKAVE 649

Query: 665 HILTQDPDLTSVRGQSIRILL 685
             ++ D +    R   ++  L
Sbjct: 650 RFISYDGNFE--RHSKMKAEL 668


>gi|55821697|ref|YP_140139.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus LMG
           18311]
 gi|55737682|gb|AAV61324.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
          Length = 672

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 242/692 (34%), Positives = 387/692 (55%), Gaps = 33/692 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  +G G K +   +K+      +     DLL Y P  + D      I E+ +  
Sbjct: 4   LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYEDF-KSKSIFELMDGE 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      +  G   I + FF +    L + F  G ++ + 
Sbjct: 57  KAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAINFFNQ--PYLVDKFEVGAEVAIF 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPV 184
           GK  + K+ +  +    +  + +D     ++ VY +  G+S     K I  A     L +
Sbjct: 115 GKWDRKKSAVTGMK---VLAHVEDD----MQPVYHVAQGVSQAQLIKAIKVAFDSGALNL 167

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + L+ K       EA  ++H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 168 LEESLPQVLMDKYRLMGRQEAVRVMHFP---KDLAEYKQALRRIKFEELFYFQMNLQVLK 224

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E   + I+ +    +  +  +PF  TK+QE ++ +IL DM     M R+LQGDVG
Sbjct: 225 AENKSETNGLAISYDEVKIKAKIATLPFPLTKAQERSLSEILADMKSGAHMNRLLQGDVG 284

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A +AM  A  AG Q+ +M P  ILA+QHY+ +K      ++ V ++T  M  A 
Sbjct: 285 SGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSLKGLF--PELKVVLLTSGMKMAD 342

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++ AL +I  G+A +I+GTH+L QD++ Y+KL LVI DEQHRFGV QR    +K   P V
Sbjct: 343 KKVALSKIESGEAQMIVGTHSLIQDAVIYHKLGLVITDEQHRFGVNQRRIFREKGDNPDV 402

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I + PAGRK I T  +   ++D V+  +K  L +  
Sbjct: 403 LMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKTIITRWVKHEQLDTVLTWIKSELEKDA 462

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++ V     L E F  S  +A++HGRM + +K+ +M  FK+  
Sbjct: 463 QVYFISPLIEESESLDLKNAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKDKK 522

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L+ +P  +
Sbjct: 523 SQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVLVANPK-N 581

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                R+  +  T DGF++AEEDLK R  GEI G +QSG+P+F +A      ++LE AR+
Sbjct: 582 DTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARR 641

Query: 662 DAKHILTQDPDL-TSVRGQSIRILLYLYQYNE 692
            A  I++ DP+   +   Q +    +L   +E
Sbjct: 642 VASQIVS-DPNWRENPDWQVLEA--HLRNQDE 670


>gi|225859451|ref|YP_002740961.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 70585]
 gi|225721463|gb|ACO17317.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 70585]
          Length = 671

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 241/687 (35%), Positives = 386/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFILAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEAWQEDPEWRMIALHLEKKEH 669


>gi|254423977|ref|ZP_05037695.1| ATP-dependent DNA helicase RecG [Synechococcus sp. PCC 7335]
 gi|196191466|gb|EDX86430.1| ATP-dependent DNA helicase RecG [Synechococcus sp. PCC 7335]
          Length = 872

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 237/690 (34%), Positives = 389/690 (56%), Gaps = 29/690 (4%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP   +PL  PL+  RG+G   +  L+K+            D+LFY+P  +ID   + KI
Sbjct: 164 RPDSTHPLDKPLTYLRGIGAHKAEKLAKL------GLLSLRDVLFYYPRDYIDYARQVKI 217

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEM------ 112
            ++     VT+   + + S F   +     I    + D T  + +  F   T        
Sbjct: 218 KDLVPGETVTLVATVKKCSCFNSPRNSKLTIFEMTVYDATSRLKISRFLAGTHFRSRGWQ 277

Query: 113 --LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE-----AVYSLPTG 165
              K ++  G  + ++G +K+ K  I +  P        D     +       VY L  G
Sbjct: 278 ERQKRLYPPGAVVAISGLVKQTKYGINIDSPEIEVLGGPDEAIASLTVGRVVPVYPLTEG 337

Query: 166 LSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225
           +  D+ +K +V AL  +  L + +   L QK     +A A   IH P      E  + AR
Sbjct: 338 VGADIVRKAVVAALPAVVELRDPLPSALRQKYELVELAAAIAHIHFPPST---EALAVAR 394

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
            RL +DE    Q+ LL  R   ++    + +   G++ +   + +PF  T +Q+   ++I
Sbjct: 395 RRLVFDEFFYLQLGLLRRRAAQQQAQTSVQVAPTGQLIEAFYKVLPFQFTNAQQRVAQEI 454

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
           L D+ +   M R++QGDVGSGKT+VA++ + AA++AG QA +MAP  +LA+QHY  + ++
Sbjct: 455 LNDLQKTAPMNRLVQGDVGSGKTVVAVVGILAAIQAGYQAALMAPTEVLAEQHYRKLVEW 514

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                + VE++TG+   A RR+    +  G+  +++GTHAL +D +Q++ L LV +DEQH
Sbjct: 515 FNLLHLPVELLTGSTRAAKRRQIHSELLTGELPVLVGTHALIEDPVQFHNLGLVTIDEQH 574

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           RFGV QR KL QK   PHVL +TATPIPRTL LT  GD+D+S+I E P GRK +KT ++ 
Sbjct: 575 RFGVAQRAKLQQKGDNPHVLTLTATPIPRTLALTIHGDLDVSQIDELPPGRKAVKTTVLG 634

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE--HFTSSIAIIH 522
                +  + ++  + +G++ Y + P +EE ++ + RS +E  + L E       + ++H
Sbjct: 635 AKERSDAYDLIRREIVQGRQVYIVLPLVEESEKLDLRSAIEEGDRLQETIFPDFQVGLLH 694

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GRMS +DK++ + +F++ T ++L++TTV+EVG+D+ +A++++IE+AE FGL+QLHQLRGR
Sbjct: 695 GRMSSVDKDAAISAFRDQTTQILVSTTVVEVGVDIPNATVMLIEHAERFGLSQLHQLRGR 754

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG + S C+L+ +   S  +  RL V++ ++DGF I+E D++ R  G++LG +QSG+P
Sbjct: 755 VGRGGDQSFCLLMTNSK-SDVAMQRLRVMEQSQDGFFISEMDMRFRGPGQVLGTRQSGLP 813

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            F +A       +LE+AR  A ++L Q+ +
Sbjct: 814 DFALASLVEDQDVLELARTAAGNVLAQESE 843


>gi|311068108|ref|YP_003973031.1| ATP-dependent DNA helicase RecG [Bacillus atrophaeus 1942]
 gi|310868625|gb|ADP32100.1| ATP-dependent DNA helicase RecG [Bacillus atrophaeus 1942]
          Length = 681

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 234/686 (34%), Positives = 375/686 (54%), Gaps = 23/686 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   +S  +G+G +    L ++            DLL Y P  + D      + ++ 
Sbjct: 1   MKRLQTSISHIKGIGSETEKTLHEL------GIYDVSDLLNYFPYRYDDY-ELRDLEDVK 53

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            +  VT+ G +    S     ++  ++      G   IT + F R    LK     G  +
Sbjct: 54  HDERVTVEGKVHSEPSLTYYGKKRNRLTFRLLVGHYLITAVCFNR--PYLKKKLSLGSVV 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182
           T++GK  K +  I++        N        IE VYS+   ++V + ++ I +ALS+ L
Sbjct: 112 TISGKWDKHRQTIMVQ----ELKNGPHQEDKSIEPVYSVKENVTVKMMRRFIQQALSQYL 167

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + + + + L      P   +A   +H P   +       AR R  Y+E L  Q+ +  
Sbjct: 168 DTMSDPLPEKLRLHYKLPDYHQALKTMHQPETRESL---KQARRRFVYEEFLLFQLKMQA 224

Query: 243 MRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            RK + ++  GI  +   +     + ++PF  T +Q   ++DI  DMS   RM R+LQGD
Sbjct: 225 FRKAEREQSQGIKHHFSNEELMSFVESLPFPLTNAQSRVLRDITADMSSPYRMNRLLQGD 284

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT VA IA+ AA+ +G Q  +M P  ILA+QH + +    +N  + + ++T ++  
Sbjct: 285 VGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQHADSLVALFENWNVNIALLTSSVKG 344

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR+ LER+  G   I++GTHAL QD +++  L LVI DEQHRFGV+QR KL  K   P
Sbjct: 345 KRRRELLERLQAGDIDILVGTHALIQDEVEFKALGLVITDEQHRFGVEQRKKLRNKGQDP 404

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL +T  G++D+S I E PAGRK I+T  +  + +D ++  ++  + +
Sbjct: 405 DVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKQIETYWVKHDMLDRILSFIEKEVRQ 464

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKN 539
           G++AY ICP IEE  + + ++ ++ +N L E +     + ++HG++   +K+ VM  F  
Sbjct: 465 GRQAYIICPLIEESDKLDVQNAIDVYNMLSEVYRGKWNVGLMHGKLHSDEKDQVMREFSA 524

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             C++L++TTV+EVG++V +A+I++I +A+ FGL+QLHQLRGRVGRGE  S CIL+  P 
Sbjct: 525 NECQILVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGEYQSFCILMADPK 584

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            S+    R+ ++  T DGF ++E+DL+ R  G+  G KQSGMP+F +A        LE A
Sbjct: 585 -SETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRALETA 643

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685
           R+DA  +++ +        Q++R  L
Sbjct: 644 RQDAADLVSSEAFWNEPEYQALREQL 669


>gi|189501758|ref|YP_001957475.1| ATP-dependent DNA helicase RecG [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497199|gb|ACE05746.1| hypothetical protein Aasi_0311 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 695

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 239/689 (34%), Positives = 380/689 (55%), Gaps = 22/689 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE- 67
              P+   +GVG K ++ L + +           DL+ ++P  + DR     I+++ E+ 
Sbjct: 5   FQTPIEYLKGVGPKKAVLLQEELQ-----IYNLADLIQHYPFRYEDRTCFHNIADVREDL 59

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V + G I         K+R     L D TG I+L++F +   +LK     G    + G
Sbjct: 60  PYVQLKGVIQSPKIITTGKKR-LVATLKDETGVISLVWFQKINGILKQ-LRPGILYQLFG 117

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-----VDLFKKIIVEALSRL 182
           K     +   +VHP      +Q      +  VY     L          +++    + + 
Sbjct: 118 KPTVYNSCYTIVHPEMEIFTAQTTQEKTLIPVYHTTEKLKASYIDSKYIRRVQANLIEQF 177

Query: 183 PV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           P+ LPE + +DL  +        A   IH P      E    AR RL ++EL   Q+ LL
Sbjct: 178 PIHLPETLPEDLCAQYKIIDKKTALANIHFPATP---EILQKARFRLKFEELFYVQLRLL 234

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             R+   ++       + K+ Q   +N IPF  T +Q+  +K+I  D+    +M R+LQG
Sbjct: 235 QARQLRLEKQIGAAYKDTKLLQDFYQNVIPFELTGAQKRVVKEIYADLKSGKQMNRLLQG 294

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA ++M   + +G Q  +MAP  IL +QHY+ ++++     + + I+TG+  
Sbjct: 295 DVGSGKTMVAFLSMLIVLGSGAQVAMMAPTEILVEQHYKKLQEFAAPLSLQIGILTGSTK 354

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--- 417
            + RRK L+ +A G   II+GTH+L  +++ +  L L ++DEQHRFGV QR K  Q+   
Sbjct: 355 TSERRKILDELAQGTLQIIVGTHSLINENVVFKNLGLAVIDEQHRFGVMQRAKFWQRDDV 414

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PHVL+M+ATPIPRTL +T  GD+D+S + E PAGRKPIKTV     +   V   +K 
Sbjct: 415 QPVPHVLIMSATPIPRTLAMTLYGDLDVSVVDEMPAGRKPIKTVHYYDAQRLRVFRFVKD 474

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            +S G++ Y + P IEE ++ +++++++ + S+   F    ++I+HGRM   DK+  M  
Sbjct: 475 QISLGRQVYVVYPLIEESEKMDYKNLIDGYESICRAFPEVPLSIVHGRMKASDKDYEMQR 534

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G  K+++ATTVIEVG++V +AS+++IENA+ FGL+QLHQLRGRVGRG++ + CIL+ 
Sbjct: 535 FVKGETKIMVATTVIEVGVNVPNASVMVIENADRFGLSQLHQLRGRVGRGQDQAYCILMT 594

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
              L+K S  R+  L +T +GF IA+ DL+ R  G+++G++QSG+ +  IA       +L
Sbjct: 595 DYKLNKKSRERIKALVHTNNGFEIADMDLRLRGPGDLMGVQQSGLLELKIADVARDGHIL 654

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +IAR+ AK I+ +DP L      +I+  L
Sbjct: 655 QIAREAAKEIIKKDPMLIQPSHYTIKNQL 683


>gi|167754008|ref|ZP_02426135.1| hypothetical protein ALIPUT_02295 [Alistipes putredinis DSM 17216]
 gi|167658633|gb|EDS02763.1| hypothetical protein ALIPUT_02295 [Alistipes putredinis DSM 17216]
          Length = 703

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 244/708 (34%), Positives = 372/708 (52%), Gaps = 25/708 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
             N L   +    GVG+  +  L K +           D+L ++P  +IDR    +I +I
Sbjct: 1   MANYLDNDIKFVAGVGEARARLLEKEL-----GIRTLGDMLCHYPFRYIDRTRIYRIDQI 55

Query: 65  SEERIVTIT--GYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           +E     I   G I+  S     ++R +  ++NDG+G   L++F +  + ++     GR+
Sbjct: 56  AEGDSALIQFRGRITGVSYAGAGRKRRFTAVVNDGSGVAELVWF-QGIKWIEKRIEVGRE 114

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSV----DLFKKIIV 176
             + G+    K  + +VHP                ++ +YS    LS          I+ 
Sbjct: 115 YLIFGRPSFFKGELSVVHPEIETIEKAFSRKAESGLQGIYSSTERLSSVLGTKGIYTIVC 174

Query: 177 EALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
                +   + E +   +  +    S+ +A   IH P+     E    A+ RL ++ELL 
Sbjct: 175 NLWPMVRDHIRETLPDRMRTRYGLLSLRDALYNIHFPQSP---ELLRQAQYRLKFEELLG 231

Query: 236 GQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            Q+ +   R  +  K    +   V G         +PF  T +Q+  +K+I QD     +
Sbjct: 232 IQLGIQSRRTARLSKNNGFLFPKVGGVFNTFFNTRLPFPLTGAQKRVVKEIRQDTISGYQ 291

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKTLVAL++M  AV+ G QA +MAP  ILA+QHY   ++  +   + V 
Sbjct: 292 MNRLLQGDVGSGKTLVALMSMLLAVDNGFQACMMAPTEILARQHYATFQRMLEGMDVRVA 351

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           I+TG      RR+AL  IA G   ++IGTHAL +D +Q+  L  V++DEQHRFGV+QR +
Sbjct: 352 ILTGASKARERREALAGIADGSIDLLIGTHALIEDRVQFSNLGFVVIDEQHRFGVEQRAR 411

Query: 414 LT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L  +    PH+L+MTATPIPRTL +T  GD+D+S I E P GR+PI+TV         + 
Sbjct: 412 LWTKNEQPPHILVMTATPIPRTLAMTLYGDLDVSVIDELPPGRQPIRTVHYTDAARLRLF 471

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDID 529
             ++  + +G++ Y + P I+E +  +++ + + + ++   F        I HG+M   D
Sbjct: 472 GFMRQEIKKGRQIYVVYPLIKESETMDYKDLQDGYEAISRDFPLPEYVTTICHGKMKPED 531

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE  M  FK+G   +++AT+VIEVG+DV +A++++IE+AE FGL+QLHQLRGRVGRG + 
Sbjct: 532 KEESMRQFKSGEANIMVATSVIEVGVDVPNATVMVIESAERFGLSQLHQLRGRVGRGSQQ 591

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQ 648
           S CIL+    LSK +  RL  +  T DGF +AE DLK R  G++ G  QSGM     IA 
Sbjct: 592 SYCILMSGEKLSKEARLRLEAMCETNDGFRLAELDLKLRGAGDVNGTLQSGMAFDLKIAN 651

Query: 649 PELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
           P L   +L + R+ A  +LT DP LT    + +R L   Y   E   F
Sbjct: 652 PTLDSQILTVTREAAAEVLTADPTLTQNGHEGLRELRKRYSGREEIDF 699


>gi|228940943|ref|ZP_04103502.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973872|ref|ZP_04134448.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980462|ref|ZP_04140772.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis Bt407]
 gi|228779282|gb|EEM27539.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis Bt407]
 gi|228785897|gb|EEM33900.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818779|gb|EEM64845.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326941624|gb|AEA17520.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 682

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 226/681 (33%), Positives = 372/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLTLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLGRYKLLPRYEALKALHFPVGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + A+  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR+ 
Sbjct: 292 VVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGARRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAI 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  ++R  L 
Sbjct: 651 LVDSEAFWHNDQYAALRTYLD 671


>gi|16331409|ref|NP_442137.1| ATP-dependent DNA helicase RecG [Synechocystis sp. PCC 6803]
 gi|3914638|sp|Q55681|RECG_SYNY3 RecName: Full=ATP-dependent DNA helicase recG
 gi|1001580|dbj|BAA10207.1| DNA recombinase [Synechocystis sp. PCC 6803]
          Length = 831

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 235/671 (35%), Positives = 386/671 (57%), Gaps = 23/671 (3%)

Query: 33  CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR---RP 89
             N       DLLFY P  ++D   +  I+E++    VTI G +   + F   K      
Sbjct: 152 LKNLGLATVEDLLFYFPRDYLDYAQQVTIAELTAGETVTIVGRVVNCTCFTSPKNQNLNI 211

Query: 90  YKILLNDGTGEITLLFFYRKTEM--------LKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
            +I L D TG I L  FY             +K ++     +  +G +K  K  + + +P
Sbjct: 212 LQIQLRDQTGRIKLSRFYAGKRFAHRGWQEKIKKLYPPQAVVAASGLVKSSKFGLTLDNP 271

Query: 142 HYIFHNSQDVNF-----PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK 196
                +    +        +  VY L  G++ D  +K+++   + +  L + + +++ +K
Sbjct: 272 EIEVLDRHSPSIDSFKVGRVLPVYPLTEGITADFLRKLVLACQTAIAKLSDPLPQEIREK 331

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQFKKEIGIPI 255
                +  A   IH P      E  S AR RL +DE    Q+  L  R +Q +++     
Sbjct: 332 YELIDLQTAIAQIHFPENT---EKLSLARRRLVFDEFFYLQLGFLQRRYEQKQQQQSAIF 388

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
              G++ +K    +PF  T++Q+  + +ILQD+++ + M R++QGDVGSGKT+V + A+ 
Sbjct: 389 TPHGELLEKFSDLLPFRLTQAQQRVVNEILQDLNKPSPMNRLVQGDVGSGKTVVGVFAIL 448

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           AA++ G QA +MAP  +LA+QHY+ +  +     + VE++TG+   A RR+   +++ GQ
Sbjct: 449 AALQGGYQAALMAPTEVLAEQHYQKLVSWFNLLYLPVELLTGSTKTAKRREIHAQLSTGQ 508

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             +++GTHAL Q+++ + +L LV++DEQHRFGVQQR KL  K  APHVL MTATPIPRTL
Sbjct: 509 LPLLVGTHALIQETVNFQRLGLVVIDEQHRFGVQQRAKLLAKGNAPHVLSMTATPIPRTL 568

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            LT  GD+++S+I E P GR+PI T +I      ++ E ++  +++G++ Y I P IEE 
Sbjct: 569 ALTLHGDLEVSQIDELPPGRQPIHTSVITAKERPQMYELIRREVAQGRQVYIIFPAIEES 628

Query: 496 KESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           ++ + ++ VE    L E      +I ++HGR+   +KE+ + +F+    +++++TTVIEV
Sbjct: 629 EKLDIKAAVEEHKYLTEKIFPNFNIGLLHGRLKSAEKEAALTAFREKQTEIIVSTTVIEV 688

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A++++IENAE FGL+QLHQLRGRVGRG   S C+L+ +   S ++  RL V++ 
Sbjct: 689 GVDVPNATVMVIENAERFGLSQLHQLRGRVGRGSHQSYCLLVTNSK-SNDARQRLGVMEQ 747

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           ++DGF IAE DL+ R  GE LG KQSG+P F +A       +L +AR+ A+ ++ +DP+L
Sbjct: 748 SQDGFFIAEMDLRLRGPGEFLGTKQSGLPDFALASLVEDQEVLLLAREAAETMMVEDPNL 807

Query: 674 TSVRGQSIRIL 684
            +     I+++
Sbjct: 808 EAHPDLKIKLV 818


>gi|321315353|ref|YP_004207640.1| ATP-dependent DNA helicase RecG [Bacillus subtilis BSn5]
 gi|320021627|gb|ADV96613.1| ATP-dependent DNA helicase RecG [Bacillus subtilis BSn5]
          Length = 682

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 235/682 (34%), Positives = 373/682 (54%), Gaps = 23/682 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
              ++  +G+G +    L ++            DLL Y P  + D      + E+  +  
Sbjct: 6   QTSIANIKGIGPETEKTLHEL------GIYDISDLLNYFPYRYDDY-ELRDLEEVKHDER 58

Query: 70  VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           VT+ G +    S     ++  ++      G   IT + F R    LK     G  +TV+G
Sbjct: 59  VTVEGKVHSEPSLTYYGKKRNRLTFRLLVGHYLITAVCFNR--PYLKKKLSLGSVVTVSG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLP 186
           K  K +  I +        N        IE VYS+   ++V + ++ I +AL++    LP
Sbjct: 117 KWDKHRQNISVQ----ELKNGPHQEDKSIEPVYSVKENVTVKMMRRFIQQALTQYADSLP 172

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245
           + + + L +    P   +A   +H P      E    AR R  Y+E L  Q+ +   RK 
Sbjct: 173 DPLPEKLRKSYKLPDYYQALKAMHQPETR---EALKLARRRFVYEEFLLFQLKMQAFRKA 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + ++  GI      +   + ++++PF  T +Q   +++I  DMS   RM R+LQGDVGSG
Sbjct: 230 EREQTQGIRQRFSNEELMRFIKSLPFPLTNAQSRVLREITADMSSPYRMNRLLQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT VA IA+ AA+ +G Q  +M P  ILA+QH + +    +   + V ++T ++    R+
Sbjct: 290 KTAVAAIALYAAILSGYQGALMVPTEILAEQHADSLVSLFEKWDVSVALLTSSVKGKRRK 349

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LER+A G+  I++GTHAL QD +++  L LVI DEQHRFGV+QR KL  K   P VL 
Sbjct: 350 ELLERLAAGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLRNKGQDPDVLF 409

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  G++D+S I E PAGRK I+T  +  + +D ++  ++  L +G++A
Sbjct: 410 MTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLDRILAFVEKELKQGRQA 469

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP IEE  + + ++ ++ +N L + F     + ++HG++   +K+ VM  F    C+
Sbjct: 470 YIICPLIEESDKLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVMREFSANHCQ 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTV+EVG++V +A+I++I +A+ FGL+QLHQLRGRVGRGE  S CIL+  P  S+ 
Sbjct: 530 ILVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGEHQSFCILMADPK-SET 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGF ++E+DL+ R  G+  G KQSGMP+F +A        LE AR+DA
Sbjct: 589 GKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRALETARQDA 648

Query: 664 KHILTQDPDLTSVRGQSIRILL 685
            +++  D          +R  L
Sbjct: 649 ANLVASDAFWKEPEYAVLRDEL 670


>gi|323127969|gb|ADX25266.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 671

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/674 (35%), Positives = 376/674 (55%), Gaps = 26/674 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP++  +G+G K +    K+         +  DLL Y+P  + D      + E+ +  
Sbjct: 3   LTAPIAHLKGLGPKSAEKFQKL------GIYQIEDLLLYYPFRYEDF-KSKSVLELLDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ITG +    + Q    +  ++      GE+ +   +     L++    G ++ + GK
Sbjct: 56  KAVITGTLVTPPNVQYYGFKRNRLTFKIKQGEVVIGVSFFNQPYLQDKLTLGNEVAIFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPVLP 186
             + K  +  +       +        ++ VY +  G+S     K I  A     L  L 
Sbjct: 116 WDQKKTALTGMKLLMTVEDD-------LQPVYHVAQGVSQTALIKAIKAAFDSGALDELK 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E I   LL+K       EA   +H P+   D+     A  R+ ++EL   Q+ L ++++ 
Sbjct: 169 ENIPDSLLEKYRLMPRQEAVYAMHFPKTLTDY---KQALRRIKFEELFYFQLRLQVLKQA 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ I  + +     +  +PF  T++QE ++++IL+DM     M R+LQGDVGSG
Sbjct: 226 NRSENSGLAIAFDQEKINHQIAALPFPLTQAQERSLQEILRDMRSGAHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT++A +AM AA  AG Q+ +M P  ILA+QHY+ + K      + + I+T  M    +R
Sbjct: 286 KTVIASLAMYAAYTAGLQSALMVPTEILAEQHYDSLIKLF--PNLSIAILTSGMKAPEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
            AL  IA G   +I+GTHAL QD++QY+KL LVI DEQHRFGV+QR    +K   P VL+
Sbjct: 344 TALAAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++D V+  +K  L +G +A
Sbjct: 404 MTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQQLDTVLAWMKTELEQGAQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ V+    L  +F   + IA++HG+M   +KE++M +FK     
Sbjct: 464 YVISPLIEESEALDLKNAVDLEAELKAYFKASARIALMHGKMKADEKEAIMQAFKAQEID 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LL++TTVIEVG++V +ASI++I +A+ FGL+QLHQLRGRVGRG + S  IL+ +P  +++
Sbjct: 524 LLVSTTVIEVGVNVPNASIMVIMDADRFGLSQLHQLRGRVGRGHKQSYAILVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R++++  T DGF++AE DLK R  GEI G +QSG+P+F  A      ++LE ARK A
Sbjct: 583 GKERMAIMTTTNDGFVLAEADLKMRGAGEIFGTRQSGLPEFKTADIVEDYAILEEARKVA 642

Query: 664 KHILTQDPDLTSVR 677
             ++T +P      
Sbjct: 643 T-MITSEPHWEQQE 655


>gi|282880443|ref|ZP_06289150.1| ATP-dependent DNA helicase RecG [Prevotella timonensis CRIS 5C-B1]
 gi|281305546|gb|EFA97599.1| ATP-dependent DNA helicase RecG [Prevotella timonensis CRIS 5C-B1]
          Length = 700

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 227/678 (33%), Positives = 370/678 (54%), Gaps = 23/678 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE- 67
           L   +    GVG K    L K +       + + DLL Y+P  ++DR    +I E+  + 
Sbjct: 5   LSQDIKYLTGVGPKRKEILEKELQ-----ISTWGDLLEYYPYKYVDRSRIYRIGELRGDL 59

Query: 68  RIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             V + G I     F +   R+      +DGTG + L++F R  + +   +    +  V 
Sbjct: 60  PFVQLKGKILSFEEFAMGAHRKRVVAHFSDGTGVVDLVWF-RGAQYVYKTYKVNEEYIVF 118

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALSR 181
           G+      R    HP         ++   ++  Y         GL+    +K+    + +
Sbjct: 119 GRPSIYGGRYQFAHPDIDKVTDVQLSEMGMQPYYMTTERMKKMGLTSRSLEKLTKTLVEK 178

Query: 182 L--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           L    + E +   ++      S  EA + IH P+  +D +     + RL ++EL   Q+ 
Sbjct: 179 LFEQTISETLPPYIIGPLHLISRTEALHKIHYPKSLEDVQRA---QVRLKFEELFYVQLN 235

Query: 240 LL-LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +L     Q +K  G      G +      N +PF  T +Q+  + +I  DM+   +M R+
Sbjct: 236 ILRYAHDQRRKYRGYVFTQVGSLFHFFYHNNLPFELTNAQKRVMHEIRNDMATGQQMNRL 295

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKTLVAL++M  A+  G QA +MAP  ILA+QH+  I+K+ +   + +E++TG
Sbjct: 296 VQGDVGSGKTLVALMSMLIAIGNGFQACMMAPTEILAEQHFATIRKFLRQMPVRIELLTG 355

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-Q 416
            +    R + L  +  G+  I++GTHA+ +D++Q+ +L L +VDEQHRFGV QR KL  +
Sbjct: 356 IVKGKKREEILNGLLTGEVQILVGTHAVIEDNVQFSRLGLAVVDEQHRFGVAQRAKLWGK 415

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N++  + + ++
Sbjct: 416 SQQPPHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKYDNQLTSLYQGIR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             + +G++ Y + P I E ++ + +++   + SL   F    ++ +HG+M   +K+  M 
Sbjct: 476 QQIRQGRQVYIVFPLITESEKIDLKNLEAGYESLCSIFPDMKLSKVHGKMKPKEKDLEMQ 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F  G  ++L+ATTVIEVG+DV +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+
Sbjct: 536 KFSKGETQILVATTVIEVGVDVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILV 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDS 654
            +  L++ +  R+ ++  T DGF IAE DLK R  G++ G +QSG+     IA       
Sbjct: 596 TNHKLTQETRKRIDIMCQTNDGFQIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQ 655

Query: 655 LLEIARKDAKHILTQDPD 672
           L+++AR +A+ I+  DPD
Sbjct: 656 LIQLARDEAQKIINDDPD 673


>gi|296875899|ref|ZP_06899960.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 15912]
 gi|296433140|gb|EFH18926.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 15912]
          Length = 671

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 239/688 (34%), Positives = 382/688 (55%), Gaps = 31/688 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PLS   GVG K +    K+            DLL Y P  + D   R  + E+ +  
Sbjct: 3   LHQPLSVLPGVGPKSAEKFKKL------GIETLEDLLLYFPFRYEDFKTR-NVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              I+G ++  ++ Q    KR   +  +  G   I + FF +    L +     + + + 
Sbjct: 56  KAVISGVVATPANVQYYGYKRNRLRFSIKQGDQVIAVNFFNQ--PYLADKIEVQQTVAIF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPV 184
           GK  K K  +  +    +    +D     ++ VY +  G+S +   K+I  A  +    +
Sbjct: 114 GKWDKAKGSLTGMK---LLAQVEDD----LQPVYRVTQGVSQNSLVKLIKIAFDQGLDQL 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + L  +    S ++A   +H P   KD      A  R+ ++ELL  Q+ L +++
Sbjct: 167 LEENVPQILRDRYQLMSRSQAVQAMHFP---KDLAEYKQALRRVKFEELLFFQLQLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++       I +  + +   +  + +PF  T++QE+++ +IL DM+    M R+LQGDVG
Sbjct: 224 EENHDASQGISLACDPEKLAERKKQLPFELTQAQENSLNEILTDMASPYHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM AA+ AG QA +M P  ILA+QH E ++    +    + ++TG +  A 
Sbjct: 284 SGKTVVAGLAMYAALSAGKQAALMVPTEILAEQHKESLQNLFPDLP--IALLTGGLKVAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R+ LE IA G   +I+GTHAL Q+ + Y  L LVI+DEQHRFGV QR  L +K   P V
Sbjct: 342 KREVLEEIASGTVQLIVGTHALIQEGVHYQDLGLVIIDEQHRFGVSQRRILREKGQNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRK I T  +   +++ V++ L   L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKEIITRWVKHEQLEVVLDWLVKELGKGS 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY+I P IEE +  + ++ +     L   F   + I+++HG+M   +K+++M +FK   
Sbjct: 462 QAYFISPLIEESEALDLKNALALQEELEAFFGQRARISLLHGKMKSEEKDAIMQAFKEHQ 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  IL+ +P  +
Sbjct: 522 VDVLVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGNKQSYAILVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 DSGKQRMKIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADLVEDYPILEEARK 640

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQ 689
            A  I+   PD        + + LYL +
Sbjct: 641 VASQIVAT-PDWREHPDWHL-LSLYLEK 666


>gi|291484138|dbj|BAI85213.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. natto BEST195]
          Length = 682

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 235/682 (34%), Positives = 373/682 (54%), Gaps = 23/682 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
              ++  +G+G +    L ++            DLL Y P  + D      + E+  +  
Sbjct: 6   QTSIANIKGIGPETEKTLHEL------GIYDISDLLNYFPYRYDDY-ELRDLEEVKHDER 58

Query: 70  VTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           VT+ G +    S     ++  ++      G   IT + F R    LK     G  +TV+G
Sbjct: 59  VTVEGKVHSEPSLTYYGKKRNRLTFRLLVGHYLITAVCFNR--PYLKKQLSLGSVVTVSG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLP 186
           K  K +  I +        N        IE VYS+   ++V + ++ I +AL++    LP
Sbjct: 117 KWDKHRQTISVQ----ELKNGPHQEDKSIEPVYSVKENVTVKMMRRFIQQALTQYADSLP 172

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245
           + + + L +    P   +A   +H P      E    AR R  Y+E L  Q+ +   RK 
Sbjct: 173 DPLPEKLRKSYKLPDYYQALKAMHQPETR---EALKLARRRFVYEEFLLFQLKMQAFRKA 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + ++  GI      +   + ++++PF  T +Q   +++I  DMS   RM R+LQGDVGSG
Sbjct: 230 EREQTQGIRQRFSNEELMRFIKSLPFPLTNAQSRVLREITADMSSPYRMNRLLQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT VA IA+ AA+ +G Q  +M P  ILA+QH + +    +   + V ++T ++    R+
Sbjct: 290 KTAVAAIALYAAILSGYQGALMVPTEILAEQHADSLVSLFEKWDVSVALLTSSVKGKRRK 349

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LER+A G+  I++GTHAL QD +++  L LVI DEQHRFGV+QR KL  K   P VL 
Sbjct: 350 ELLERLAAGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLRNKGQDPDVLF 409

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  G++D+S I E PAGRK I+T  +  + +D ++  ++  L +G++A
Sbjct: 410 MTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLDRILAFVEKELKQGRQA 469

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP IEE  + + ++ ++ +N L + F     + ++HG++   +K+ VM  F    C+
Sbjct: 470 YIICPLIEESDKLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVMREFSANHCQ 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTV+EVG++V +A+I++I +A+ FGL+QLHQLRGRVGRGE  S CIL+  P  S+ 
Sbjct: 530 ILVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGEHQSFCILMADPK-SET 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGF ++E+DL+ R  G+  G KQSGMP+F +A        LE AR+DA
Sbjct: 589 GKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRALETARQDA 648

Query: 664 KHILTQDPDLTSVRGQSIRILL 685
            +++  D          +R  L
Sbjct: 649 ANLVASDAFWKEPEYAVLRDEL 670


>gi|332074033|gb|EGI84511.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA41301]
          Length = 671

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/687 (34%), Positives = 385/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +I+GTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIVGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEAWQEDPEWRMIALHLEKKEH 669


>gi|78486490|ref|YP_392415.1| ATP-dependent DNA helicase RecG [Thiomicrospira crunogena XCL-2]
 gi|78364776|gb|ABB42741.1| ATP-dependent DNA helicase RecG [Thiomicrospira crunogena XCL-2]
          Length = 690

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 255/695 (36%), Positives = 385/695 (55%), Gaps = 25/695 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+T +GVG K    L+++            DLLF+ P  + D+      S++   +   I
Sbjct: 7   LTTLKGVGDKLVEKLNRL------GLFHVQDLLFHLPLRYQDKTKLTPASQLLIGQEALI 60

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G I         +     + L D + + I+  FF+         F  G K+   G+++ 
Sbjct: 61  EGEIIG-QHMTQSRNSSLIVKLVDPSNQPISCRFFHFHYRQ-AQQFKRGLKLRAYGEVRS 118

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
             + + +VHP Y   N +        +  VY +  GL      K++ + L  L   P  E
Sbjct: 119 GPSGLEIVHPTYQLFNPESPPPLEETLTPVYPVTEGLGQPTLLKLMQQTLQLLKQYPLEE 178

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   LL++   P I ++   +H P+   D      +  PA+ RL ++ELL  Q++L L+
Sbjct: 179 ALPPSLLEELRLPPINQSLQTLHEPQPEDDLLQIKRFEHPAQRRLIFEELLTHQLSLQLL 238

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  K+ I  P     + A ++L+N+PF  T +Q   + DI QD +Q + M R++QGDVG
Sbjct: 239 RQHEKQRI-APKVPASETASRLLKNLPFKLTGAQSRVLNDIQQDFNQPHPMQRLIQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A +A     +AG Q  +MAP  ILA+QH     ++     I V  + G M  A 
Sbjct: 298 SGKTIIAALAALQVADAGYQVAVMAPTEILAEQHKNHFLEWLDPLDIPVAWLNGRMKAAE 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL----TQKAT 419
           +R+AL++I  G+A +IIGTHALFQDS+ +  L LVI+DEQHRFGV QRL L    TQ  +
Sbjct: 358 KREALQKIESGKAKVIIGTHALFQDSVTFDHLGLVIIDEQHRFGVHQRLALHDKGTQNDS 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +T+ GD+D+S I E P GR+PI+T ++   +  EV+E L+   
Sbjct: 418 HPHQLIMTATPIPRTLAMTAYGDLDLSIIDELPPGRQPIETAVLNNTKRFEVMEHLQAQC 477

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            +G +AYW+CP IEE +  + ++         +H+    + +IHGR+   +K   M +FK
Sbjct: 478 KQGVQAYWVCPLIEESELLHAQAAEVTAQQFMDHWPDLRVGLIHGRLKAEEKTERMRAFK 537

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    LL+ATTVIEVG++V +AS++IIENAE  GLAQLHQLRGRVGRG + S C+LLY  
Sbjct: 538 NHELDLLVATTVIEVGVNVPNASLMIIENAERLGLAQLHQLRGRVGRGSKKSHCVLLYQS 597

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           P+ + S  RL++++ + DGF IAEEDLK R  GEILG +Q+G   F IA  +   +++  
Sbjct: 598 PMGETSKARLNIMRESNDGFKIAEEDLKIRGPGEILGTRQTGGLHFRIADLKRDQAMIPE 657

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            +  A+ ++ Q  ++        R +     Y  A
Sbjct: 658 VKHYAELLVRQHIEVADALN--TRWVGEKMDYKHA 690


>gi|218233045|ref|YP_002368656.1| ATP-dependent DNA helicase RecG [Bacillus cereus B4264]
 gi|229071353|ref|ZP_04204576.1| ATP-dependent DNA helicase recG [Bacillus cereus F65185]
 gi|229081110|ref|ZP_04213620.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock4-2]
 gi|229192024|ref|ZP_04318994.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 10876]
 gi|218161002|gb|ACK60994.1| ATP-dependent DNA helicase RecG [Bacillus cereus B4264]
 gi|228591575|gb|EEK49424.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 10876]
 gi|228702154|gb|EEL54630.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock4-2]
 gi|228711807|gb|EEL63759.1| ATP-dependent DNA helicase recG [Bacillus cereus F65185]
          Length = 682

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 227/681 (33%), Positives = 372/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G I      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKIHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLKLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLGRYKLLPRYEALRALHFPVGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + A+  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR+ 
Sbjct: 292 VVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGARRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAI 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  ++R  L 
Sbjct: 651 LVDSEAFWHNDQYAALRTYLD 671


>gi|224535823|ref|ZP_03676362.1| hypothetical protein BACCELL_00687 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522546|gb|EEF91651.1| hypothetical protein BACCELL_00687 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 698

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 236/689 (34%), Positives = 373/689 (54%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L +  +    GVG + +  L+K +     N     DLL+Y P  ++DR     I EI
Sbjct: 1   MFDLASRDIKYLSGVGPQRASVLNKEL-----NIYSLHDLLYYFPYKYVDRSRIYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +    ++R      +DGTG + L++F +  + L   +   ++ 
Sbjct: 56  DGTMPYIQLKGEILGFETIGEGRQRRLIAHFSDGTGIVDLVWF-QGIKFLVGKYKVHQEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            V GK      RI + HP     +   ++   ++  Y+         L+    +K++   
Sbjct: 115 IVFGKPSVFNGRINIAHPDIDNASELKLSTMGLQPYYNTTEKMKRSSLNSHAIEKMMSAV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + +L   LPE +   +L +     + EA   IH P      E    A+ RL ++EL   Q
Sbjct: 175 VQQLREPLPETLSPAILTEHHLMPLTEALMNIHFPANP---ELLRKAQYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + +K  G      G+I      +N+PF  T +Q+  +K+I +D+    +M 
Sbjct: 232 LNILRYAKDRQRKYRGYVFETVGEIFNTFYAKNLPFELTGAQKRVLKEIRRDVGSGKQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QH+E I++      I VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLIALDNGYQACMMAPTEILANQHFETIRELLYGMDIRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G   I+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L 
Sbjct: 352 TGSVKGKKREAILTGLLTGDVRILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            + A  PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+         + + 
Sbjct: 412 TKNAQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIVTIHKYDAHRVSLYQS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +   ++EG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ 
Sbjct: 472 VHRQIAEGRQVYIVYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKAAEKDAQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MQLFVSGEAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+    L + +  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTGYKLVEETRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ ++  DP       + +
Sbjct: 652 GQLLQYVRNVAEEVVDADPTGIRPENEIL 680


>gi|229174521|ref|ZP_04302053.1| ATP-dependent DNA helicase recG [Bacillus cereus MM3]
 gi|228609081|gb|EEK66371.1| ATP-dependent DNA helicase recG [Bacillus cereus MM3]
          Length = 682

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 225/681 (33%), Positives = 371/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L+++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLNEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLNLNETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +A       + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQAFKEYGESIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLSRYKLLPRYEALRSLHFPAGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +     Q+ +  +PF  T +Q   + +I++DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSAELQEFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++    RR+ 
Sbjct: 292 VVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMNVELLTSSVKGVRRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAL 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  S+R  L 
Sbjct: 651 LVESEAFWHNDQYASLRTYLD 671


>gi|307707477|ref|ZP_07643959.1| ATP-dependent DNA helicase RecG [Streptococcus mitis NCTC 12261]
 gi|307616429|gb|EFN95620.1| ATP-dependent DNA helicase RecG [Streptococcus mitis NCTC 12261]
          Length = 671

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 239/687 (34%), Positives = 383/687 (55%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLTQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLGEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ ++   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLDWSQEKVSAVKESLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG Q+ +M P  ILA+QH+E +K       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQSALMVPTEILAEQHFESLKSLF--PDLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A  IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADFIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKEQKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEGWQEDPEWRMIALHLEKKEH 669


>gi|331265918|ref|YP_004325548.1| ATP-dependent DNA helicase RecG [Streptococcus oralis Uo5]
 gi|326682590|emb|CBZ00207.1| ATP-dependent DNA helicase RecG [Streptococcus oralis Uo5]
          Length = 671

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 239/675 (35%), Positives = 377/675 (55%), Gaps = 30/675 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQSLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ ++   +    +   +PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLDWSQEKVTAVKETLPFTLTQAQEKSLREILADMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E +K       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLKNLF--PDLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+   IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEVDFIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRVLREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHI-----LTQDPDL 673
            +I       +DP+ 
Sbjct: 643 SYISSIEGWKEDPEW 657


>gi|251783245|ref|YP_002997550.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391877|dbj|BAH82336.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 676

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/674 (35%), Positives = 376/674 (55%), Gaps = 26/674 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP++  +G+G K +    K+         +  DLL Y+P  + D      + E+ +  
Sbjct: 8   LTAPIAHLKGLGPKSAEKFQKL------GIYQIEDLLLYYPFRYEDF-KSKSVLELLDGE 60

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ITG +    + Q    +  ++      GE+ +   +     L++    G ++ + GK
Sbjct: 61  KAVITGTLVTPPNVQYYGFKRNRLTFKIKQGEVVIGVSFFNQPYLQDKLTLGNEVAIFGK 120

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPVLP 186
             + K  +  +       +        ++ VY +  G+S     K I  A     L  L 
Sbjct: 121 WDQKKTALTGMKLLMTVEDD-------LQPVYHVAQGVSQTALIKAIKAAFDSGALDELK 173

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E I   LL+K       EA   +H P+   D+     A  R+ ++EL   Q+ L ++++ 
Sbjct: 174 ENIPDSLLEKYRLMPRQEAVYAMHFPKTLTDY---KQALRRIKFEELFYFQLRLQVLKQA 230

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ I  + +     +  +PF  T++QE ++++IL+DM     M R+LQGDVGSG
Sbjct: 231 NRSENSGLAIAFDQEKINHQIAALPFPLTQAQERSLQEILRDMRSGAHMNRLLQGDVGSG 290

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT++A +AM AA  AG Q+ +M P  ILA+QHY+ + K      + + I+T  M    +R
Sbjct: 291 KTVIASLAMYAAYTAGLQSALMVPTEILAEQHYDSLIKLF--PNLSIAILTSGMKAPEKR 348

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
            AL  IA G   +I+GTHAL QD++QY+KL LVI DEQHRFGV+QR    +K   P VL+
Sbjct: 349 TALAAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGDNPDVLM 408

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++D V+  +K  L +G +A
Sbjct: 409 MTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQQLDTVLAWMKTELEQGAQA 468

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ V+    L  +F   + IA++HG+M   +KE++M +FK     
Sbjct: 469 YVISPLIEESEALDLKNAVDLEAELKAYFKASARIALMHGKMKADEKEAIMQAFKAQEID 528

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LL++TTVIEVG++V +ASI++I +A+ FGL+QLHQLRGRVGRG + S  IL+ +P  +++
Sbjct: 529 LLVSTTVIEVGVNVPNASIMVIMDADRFGLSQLHQLRGRVGRGHKQSYAILVANPK-TES 587

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R++++  T DGF++AE DLK R  GEI G +QSG+P+F  A      ++LE ARK A
Sbjct: 588 GKERMAIMTTTNDGFVLAEADLKMRGAGEIFGTRQSGLPEFKTADIVEDYAILEEARKVA 647

Query: 664 KHILTQDPDLTSVR 677
             ++T +P      
Sbjct: 648 T-MITSEPHWEQQE 660


>gi|218899008|ref|YP_002447419.1| ATP-dependent DNA helicase RecG [Bacillus cereus G9842]
 gi|218545708|gb|ACK98102.1| ATP-dependent DNA helicase RecG [Bacillus cereus G9842]
          Length = 682

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 226/681 (33%), Positives = 371/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLTLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLGRYKLLPRYEALKALHFPVGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + A+  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR  
Sbjct: 292 VVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGARRRDI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAI 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  ++R  L 
Sbjct: 651 LVESEAFWHNDQYAALRTYLD 671


>gi|229117341|ref|ZP_04246719.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock1-3]
 gi|228666241|gb|EEL21705.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock1-3]
          Length = 682

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 229/681 (33%), Positives = 371/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGSVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSMVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLNRYKLLPRYEALRALHFPVGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSTELQEFIDALPFPLTGAQHRVVDEILKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + AA  A  Q  +M P  ILA+QHY+ + +      + VE++T ++  A RR+ 
Sbjct: 292 VVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSRFGMTVELLTSSVKGARRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L R+  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LARLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAI 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  S+R  L 
Sbjct: 651 LVDSEAFWHNDQYASLRTYLD 671


>gi|194396798|ref|YP_002038308.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae G54]
 gi|194356465|gb|ACF54913.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae G54]
          Length = 671

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 241/687 (35%), Positives = 385/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEAWQEDPEWRMIALHLEKKEH 669


>gi|253566377|ref|ZP_04843831.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_2_5]
 gi|251945481|gb|EES85919.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_2_5]
          Length = 698

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 233/689 (33%), Positives = 369/689 (53%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +           DLL+Y P  ++DR     I EI
Sbjct: 1   MFDLTTRDIKYLSGVGPQKAAVLNKELE-----IYSLHDLLYYFPYKYVDRSRIYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +F   ++R      +DGTG + L++F +  + + N +    + 
Sbjct: 56  DGNMPYIQLKGKILGFETFGEGRQRRLLAHFSDGTGVVDLVWF-QGIKYVTNKYKLHEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            V GK      RI + HP         ++   ++  Y+         L+    +K++   
Sbjct: 115 IVFGKPTVFNGRINVAHPDIDSPADLKLSSMGLQPYYNTTEKMKRSFLNSHAIEKMMATV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + ++   L E +   L+      S+ +A   IH P      E    A+ RL ++EL   Q
Sbjct: 175 IGQIQEPLSETLSPKLIADHHLMSLTDALRNIHFPSNP---ELLRKAQYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + +K  G      G+       +N+PF  T +Q+  +++I QD+    +M 
Sbjct: 232 LNILRYAKDRQRKYRGYVFETVGETFNTFYSKNLPFELTGAQKRVLREIRQDVGCGKQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHY+ I++      + VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLMALDNGFQACMMAPTEILANQHYDTIRELLFGMDVRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G  HI+IGTHA+ +D++ +  L L ++DEQHRFGV QR +L 
Sbjct: 352 TGSVKGKKREAILAGLLTGDVHILIGTHAVIEDTVNFASLGLAVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   
Sbjct: 412 SKSVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRRESLYRS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ 
Sbjct: 472 VRKQIEEGRQVYIVYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CI
Sbjct: 532 MQLFISGDAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+    L++ +  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTTYKLTEETRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ I   DP         +
Sbjct: 652 GQLLQYVRTIAEEITDADPGGVLPENAIL 680


>gi|71905998|ref|YP_283585.1| ATP-dependent DNA helicase RecG [Dechloromonas aromatica RCB]
 gi|71845619|gb|AAZ45115.1| ATP-dependent DNA helicase RecG [Dechloromonas aromatica RCB]
          Length = 683

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 234/659 (35%), Positives = 368/659 (55%), Gaps = 15/659 (2%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
           +     L+KI            DLL + P  + D      +        V I   + Q +
Sbjct: 18  EALQKKLAKI------GLHSEADLLVHLPLRYEDETRITPVKRAFGGEAVQIE-VVVQSN 70

Query: 81  SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
             Q + RR   +   D +GEITL FF       +    EG ++   G+++       MVH
Sbjct: 71  EVQFRPRRQMIVRAADDSGEITLRFFSFYPSQ-QAALSEGSRLRAFGEVRGGFFGAEMVH 129

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200
           P +      +     +  +Y    GL+    +K+I +AL+    L + + + L Q+   P
Sbjct: 130 PRFRKVGGDEALPTEMTPIYPSTAGLANSALQKLIGKALAVGD-LSDTLPETLRQRLKLP 188

Query: 201 SIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
            +A + N +H P    D +       PA  R+ +DE+LA Q++L       +++    + 
Sbjct: 189 GLARSLNFLHRPPPGTDLDTLHARNHPAWRRVKFDEVLAQQLSLRRAYLARREQGAPVLV 248

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            +  +  ++L  +PF  T +Q  A+ +I  D++Q   M R+LQGDVG+GKT+VA +A   
Sbjct: 249 AQDDLGARLLDQLPFGLTGAQLRAMAEIADDLAQPYPMQRLLQGDVGAGKTIVAALAACQ 308

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           A+ AG QA  MAP  ILA+QHY  +K + +   + V  ++G++    +R+ L   A  +A
Sbjct: 309 AISAGWQAAFMAPTEILAEQHYLKLKDWLEPLGVKVAWLSGSLKTKAKREQLAATAA-EA 367

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            +++GTHAL QD + + +L L IVDEQHRFGV QRL L +K   PH L+M+ATPIPRTL 
Sbjct: 368 QLVVGTHALIQDGVDFARLGLAIVDEQHRFGVAQRLALRKKGNNPHQLMMSATPIPRTLA 427

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           ++   D+D++ + E P GR PIKT ++  NR ++V+  +K  + EG++AYW+CP IEE +
Sbjct: 428 MSYYADLDVTVLDELPPGRTPIKTRLVADNRREDVVGFVKKSVEEGRQAYWVCPLIEESE 487

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
               ++  + +  L        I ++HGR+   +K++VM +F  G   +L+ATTVIEVG+
Sbjct: 488 ALQLQTAQDTYEQLSIDLPELVIGLVHGRLKADEKQAVMAAFAAGDIDVLVATTVIEVGV 547

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +AS+++IE+AE FGL+QLHQLRGRVGRG+  SSC+L+Y  PL + +  RL ++    
Sbjct: 548 DVPNASLMVIEHAERFGLSQLHQLRGRVGRGKYESSCVLIYAGPLGEIARQRLKIIFENT 607

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           DGF IA +DL+ R  GE +G +QSG+P    A  E+   L+E+AR  A+ +LT+  +L 
Sbjct: 608 DGFEIARQDLQIRGPGEFVGARQSGVPLLRYADLEMDADLVEMARDVAEEMLTEHLELA 666


>gi|148989348|ref|ZP_01820716.1| hypothetical protein CGSSp6BS73_07619 [Streptococcus pneumoniae
           SP6-BS73]
 gi|149021207|ref|ZP_01835453.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP23-BS72]
 gi|147925098|gb|EDK76178.1| hypothetical protein CGSSp6BS73_07619 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147930308|gb|EDK81292.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP23-BS72]
          Length = 671

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/687 (34%), Positives = 385/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ ++   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLDWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEAWQEDPEWRMIALHLEKKEH 669


>gi|15903582|ref|NP_359132.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae R6]
 gi|1150620|emb|CAA90280.1| MmsA [Streptococcus pneumoniae]
 gi|15459203|gb|AAL00343.1| Branch migration of Holliday junctions, junction-specific DNA
           helicase [Streptococcus pneumoniae R6]
 gi|1588991|prf||2209420A mmsA gene
          Length = 671

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 241/687 (35%), Positives = 384/687 (55%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ + EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFAELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEAWQEDPEWRMIALHLEKKEH 669


>gi|148984139|ref|ZP_01817434.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus
           pneumoniae SP3-BS71]
 gi|225861521|ref|YP_002743030.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|147923428|gb|EDK74541.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus
           pneumoniae SP3-BS71]
 gi|225728405|gb|ACO24256.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|301800505|emb|CBW33144.1| ATP-dependent DNA helicase [Streptococcus pneumoniae OXC141]
 gi|327389882|gb|EGE88227.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA04375]
 gi|332200255|gb|EGJ14328.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA47368]
          Length = 671

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 239/687 (34%), Positives = 384/687 (55%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ ++   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLDWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKTEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEAWQEDPEWRMIALHLEKKEH 669


>gi|115377219|ref|ZP_01464431.1| ATP-dependent DNA helicase RecG [Stigmatella aurantiaca DW4/3-1]
 gi|310821200|ref|YP_003953558.1| ATP-dependent DNA helicase RecG [Stigmatella aurantiaca DW4/3-1]
 gi|115365802|gb|EAU64825.1| ATP-dependent DNA helicase RecG [Stigmatella aurantiaca DW4/3-1]
 gi|309394272|gb|ADO71731.1| ATP-dependent DNA helicase RecG [Stigmatella aurantiaca DW4/3-1]
          Length = 898

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 234/704 (33%), Positives = 370/704 (52%), Gaps = 19/704 (2%)

Query: 8   PLFAPLSTF-RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           PL  PL T  + +G +    L K          R  D+LF  P  + DR     I+E+  
Sbjct: 203 PLSTPLKTLGKRLGPRLLGALDK------KGLRRVGDILFLLPRCYEDRRKLKTIAELEP 256

Query: 67  ERIVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
                  G +        +  + Y K ++ D +G I   +F+     LKN F  G+++ +
Sbjct: 257 GGRGVTVGLVKTADYVSGRNGKRYFKAVVADRSGSIAATYFHAG-PWLKNRFTVGKRLVL 315

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD---VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           +G+++   +   M HP        +   V+F  I  +Y          F+++        
Sbjct: 316 SGEVRASLSGREMAHPEIEPAEDLESSSVHFNRIVPIYPGFERGDQRSFREVASRVSENY 375

Query: 183 PV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQ 237
              + E + + L ++    ++ EA   IH P      E      SP+  RLA+DEL   Q
Sbjct: 376 AQHIEEPLPEALRKRLGLVALPEALRSIHFPPDTAHLEALDAHQSPSHRRLAFDELFFLQ 435

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + + L R+  K E GI  NV  +   +    +PF+ T +Q   ++++ QDM++   M R+
Sbjct: 436 LGMGLKRQNVKTEQGIAFNVSPERVDRARGALPFALTGAQARVVEELAQDMARPEPMNRL 495

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT VA++A   A++ G Q  +MAP  ILA+QH    +K  +     V +++ 
Sbjct: 496 VQGDVGSGKTAVAVVASLLALQDGYQVAVMAPTEILAEQHERSFRKLLEPLGFRVGLVSA 555

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                H+R+  E +A G+ H+ +GTHAL Q  + + +L L ++DEQHRFGV QR  L  K
Sbjct: 556 AGTAKHKREVREALAQGEIHLAVGTHALIQGGVAFERLGLAVIDEQHRFGVLQRHTLMSK 615

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL +T  GD+D+S I E P GR P+ T +    +   V E +  
Sbjct: 616 GPTPDVLVMTATPIPRTLAMTLYGDLDVSIIDELPPGRTPVATRVFNEQQRARVYESVGA 675

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDS 536
            +++G +AY + P +EE ++ +          L + F  + + ++HGRM   +K++VM++
Sbjct: 676 EIAKGHQAYIVYPLVEESEKLDLEDATRGAEKLQQVFPQARVGLLHGRMKAEEKDAVMEA 735

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+     +L+ TTV+EVG+DV +AS++++E AE FGL+QLHQLRGRVGRG  IS C L+ 
Sbjct: 736 FREQRIHILVCTTVVEVGVDVPNASVMVVEAAERFGLSQLHQLRGRVGRGAAISFCYLVA 795

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
               S  S  RL+V++ + DGF+IAE+DL+ R  GE LG +QSG+P+  +A       LL
Sbjct: 796 SLARSWESSERLAVMEQSSDGFIIAEKDLEIRGPGEFLGTRQSGLPELAVANLARDGDLL 855

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            +A+ +A+ IL +D  L +   Q +   L   ++       R G
Sbjct: 856 SLAQAEARRILERDAHLQAPEHQGLVKALE-ERWEGRLALARVG 898


>gi|223933446|ref|ZP_03625431.1| ATP-dependent DNA helicase RecG [Streptococcus suis 89/1591]
 gi|330832178|ref|YP_004401003.1| ATP-dependent DNA helicase [Streptococcus suis ST3]
 gi|223897884|gb|EEF64260.1| ATP-dependent DNA helicase RecG [Streptococcus suis 89/1591]
 gi|329306401|gb|AEB80817.1| ATP-dependent DNA helicase [Streptococcus suis ST3]
          Length = 672

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 238/679 (35%), Positives = 374/679 (55%), Gaps = 30/679 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   LS   G+G K +    KI      N     DLL Y+P  + D      I ++ 
Sbjct: 1   MKRLCDELSVLPGIGPKSAEKFLKI------NIQNINDLLTYYPFRYEDF-ESKSIYDLQ 53

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           +     + G +   ++ Q    +  ++  +   GE+ L   +     L +    G+ I V
Sbjct: 54  DGEKAVVVGEVVSPANVQYYGYKRNRLRFSMKQGEVVLAVSFFNQPYLADKIVLGQDIAV 113

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LP 183
            GK  K K  +  +       +        ++ VY +  G+S     K I  A+ +  L 
Sbjct: 114 WGKWDKAKASLTGMKILAQVSDE-------LQPVYHVAQGISQVNLVKAIKTAIDQGYLH 166

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           +L E +   L ++    +  EA   +H P      E    A  R+ ++EL   Q+ L ++
Sbjct: 167 LLEENLPSVLRERYRLMNRREAVFAMHFPTN---LEEYRQALRRMKFEELFYFQLQLQML 223

Query: 244 RKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +   +     + I  +       +R +PF  T +Q  A+ +IL DM     M R+LQGDV
Sbjct: 224 KANNRDISNGLKIAYDADRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMNRLLQGDV 283

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA +AM AAV AG QA IM P  ILA+QH+E +++     ++ + ++TG M  A
Sbjct: 284 GSGKTVVAGLAMFAAVTAGMQAAIMVPTEILAEQHFESLRQLF--PELSIALLTGGMKAA 341

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            RR ALE I+ GQ  II+GTHAL Q+S+ Y+KL LV+ DEQHRFGV+QR    +K   P 
Sbjct: 342 ERRTALEAISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREKGDNPD 401

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   ++  V++ L+  L  G
Sbjct: 402 VLMMTATPIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWLERELEVG 461

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNG 540
            + Y+I P IEE +  + ++ V+  + L  HF   + +  +HG+M + +K+++M +FK  
Sbjct: 462 AQVYFISPLIEESEALDLKNAVDLQSDLQAHFGEQVTVDLLHGKMKNDEKDAIMQAFKER 521

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  
Sbjct: 522 KTNILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK- 580

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +++   R+ ++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR
Sbjct: 581 TESGKERMKIMTETTDGFILAEADLKMRGSGEIFGTRQSGLPEFQVANIIEDYPILEEAR 640

Query: 661 KDAKHIL-----TQDPDLT 674
           + A  I+      +DP+ +
Sbjct: 641 RVASQIVSVENWQEDPNWS 659


>gi|312279039|gb|ADQ63696.1| ATP-dependent DNA helicase recG, transcription-repair coupling
           factor, putative [Streptococcus thermophilus ND03]
          Length = 672

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 242/692 (34%), Positives = 386/692 (55%), Gaps = 33/692 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  +G G K +   +K+      +     DLL Y P  + D      I E+ +  
Sbjct: 4   LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYEDF-KSKSIFELMDGE 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      +  G   I + FF +    L + F  G ++ + 
Sbjct: 57  KAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAINFFNQ--PYLVDKFEVGAEVAIF 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPV 184
           GK  + K+ +  +    +  + +D     ++ VY +  G+S     K I  A     L +
Sbjct: 115 GKWDRKKSAVTGMK---VLAHVEDD----MQPVYHVAQGVSQAQLIKAIKVAFDSGALNL 167

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + L+ K       EA  ++H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 168 LEESLPQVLMDKYRLMGRQEAVRVMHFP---KDLAEYKQALRRIKFEELFYFQMNLQVLK 224

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E   + I+ +    +  +  +PF  TK+QE ++ +IL DM     M R+LQGDVG
Sbjct: 225 AENKSETNGLAISYDEVKIKAKIATLPFPLTKAQERSLSEILADMKSGAHMNRLLQGDVG 284

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A +AM  A  AG Q+ +M P  ILA+QHY+ +K      ++ V ++T  M  A 
Sbjct: 285 SGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSLKGLF--PELKVVLLTSGMKMAD 342

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++ AL +I  G+A +I+GTH+L QD++ Y+KL LVI DEQHRFGV QR    +K   P V
Sbjct: 343 KKVALSKIESGEAQMIVGTHSLIQDAVIYHKLGLVITDEQHRFGVNQRRIFREKGDNPDV 402

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I + PAGRK I T  +   ++D V+  +K  L +  
Sbjct: 403 LMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKTIITRWVKHEQLDTVLTWIKSELEKDA 462

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++ V     L E F  S  +A++HGRM + +K+ +M  FK+  
Sbjct: 463 QVYFISPLIEESESLDLKNAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKDKK 522

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L+ +P  +
Sbjct: 523 SQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVLVANPK-N 581

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                R+  +  T DGF++AEEDLK R  GEI G +QSG+P+F +A      ++LE AR 
Sbjct: 582 DTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARC 641

Query: 662 DAKHILTQDPDL-TSVRGQSIRILLYLYQYNE 692
            A  I++ DP+   +   Q +    +L   +E
Sbjct: 642 VASQIVS-DPNWRENPDWQVLEA--HLRNQDE 670


>gi|218128542|ref|ZP_03457346.1| hypothetical protein BACEGG_00112 [Bacteroides eggerthii DSM 20697]
 gi|217989266|gb|EEC55580.1| hypothetical protein BACEGG_00112 [Bacteroides eggerthii DSM 20697]
          Length = 698

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 237/689 (34%), Positives = 374/689 (54%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +         F DLL+Y P  ++DR     I EI
Sbjct: 1   MFDLTTRDIKYLSGVGPQRASVLNKEL-----GIFSFHDLLYYFPYKYVDRSRIYYIQEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +    ++R      +DGTG + L++F +  + L   +   ++ 
Sbjct: 56  DGTMPYIQLKGEILGFETAGEGRQRRLIAHFSDGTGVVDLIWF-QGIKYLIGKYKVHQEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            V GK      RI + HP     +   ++   ++  Y+         L+    +K++   
Sbjct: 115 IVFGKPSVFNGRINIAHPDIDPASELKLSAMGLQPYYNTTEKMKRSSLNSHAIEKMMKNI 174

Query: 179 LSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + +L   LPE +   LL +     + EA   IH P      +    A  RL ++EL   Q
Sbjct: 175 VRQLDEPLPETLSPALLAEHHLMPLTEALMNIHFPVSP---DVLRKAEYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + +K  G      G        RN+PF  T +Q+  +K+I +D+    +M 
Sbjct: 232 LNILRYAKDRQRKYRGYVFEKVGDTFNGFYSRNLPFELTNAQKRVLKEIRRDLGSGRQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHY+ I++      + VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLMALDNGYQACMMAPTEILANQHYDTIRELLYGMDVRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G   I+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L 
Sbjct: 352 TGSIKGKRREAILSGLLTGDVQILIGTHAVIEDTVNFASLGLVVIDEQHRFGVAQRARLW 411

Query: 416 QKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            K+T  PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    +    +   
Sbjct: 412 AKSTQPPHILVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDSHRVSLYRS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P I+E ++ + +++ E F  + E F    +  +HG+M   +K++ 
Sbjct: 472 VRKQIEEGRQVYIVYPLIKESEKIDLKNLEEGFLHICEEFPDCKVCKVHGKMKPAEKDAQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MQLFVSGEAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+    L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTGYKLAEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ I+ +DP+      + +
Sbjct: 652 GQLLQYVRGVAEAIVDKDPNGELPENEIL 680


>gi|320160931|ref|YP_004174155.1| ATP-dependent DNA helicase RecG [Anaerolinea thermophila UNI-1]
 gi|319994784|dbj|BAJ63555.1| ATP-dependent DNA helicase RecG [Anaerolinea thermophila UNI-1]
          Length = 816

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 226/705 (32%), Positives = 374/705 (53%), Gaps = 31/705 (4%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            L  L  PL    GVGKK +  L K+            DLL++ P  + D      I+++
Sbjct: 123 ILRTLQTPLHRVSGVGKKTAEALEKL------GINTLQDLLYFFPRRYDDYSRLKPINKL 176

Query: 65  SEERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
                VT+ G +   +S Q++  K +  + ++ DGTG + L +F +      N F +G +
Sbjct: 177 KYGDEVTVLGVVQAIASRQVRDGKLQLIEAIITDGTGTLRLSWFNK--LWYVNRFPKGTQ 234

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII-VEALSR 181
           + V+GK+     ++IM  P     + + ++   I  VY L   L+    ++++    +  
Sbjct: 235 VAVSGKLDMYLGKLIMKDPEIEEIDREQLHTSRIVPVYPLTADLNQKSLRRLMYRTIMQW 294

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P + +++   +        +  A +  H P      +     R RLA+DE+   Q+ +L
Sbjct: 295 APKVSDFLPASVRSSLKLLELGVALSQAHFPDSQDVLDQA---RWRLAFDEIFLLQLGVL 351

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
             +  +K       +V     ++ L  +P+  T +Q+ A+++I  D+     M R+LQGD
Sbjct: 352 RQKHSWKSLQARVFDVPDTWLEQKLAQLPYELTNAQKRAVQEIRADLVSGKPMDRLLQGD 411

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT---------QIIV 352
           VGSGKT+VA +A+      G Q  +MAP  ILA+QHY  + +    +            +
Sbjct: 412 VGSGKTIVAALAIGMVTYHGAQVAVMAPTSILAEQHYRNLSRVLTQSDESTLPILQPEQI 471

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++T ++  A R K L  + HG   ++IGTHAL +D +Q+  L LV++DEQHRFGV QR 
Sbjct: 472 RLLTSDVRGAEREKILNDLQHGSVKLLIGTHALIEDPVQFQDLQLVVIDEQHRFGVAQRA 531

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L QK   PH+L+MTATPIPR+L LT  GD+D++ + E P GR+P++T ++     +   
Sbjct: 532 ALRQKGNNPHLLVMTATPIPRSLALTIYGDLDLTVMDEMPPGRQPVETHVLHPLERERAY 591

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDK 530
           + ++  +S+G +AY I P +E+ +     SVV+ +  L +       I ++HG++   +K
Sbjct: 592 QLIRHEISKGHQAYIIYPMVEQNENGEHLSVVQEYTRLQQEIFPEFRIGMMHGKLKPEEK 651

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + VM  F++G   +L++T+VIEVG+DV +A++++IE A  FGLAQLHQ RGRVGRG E S
Sbjct: 652 DEVMAGFRDGKYHILVSTSVIEVGVDVPNATVMLIEGANRFGLAQLHQFRGRVGRGSEKS 711

Query: 591 SCILLYHPPLSKNSYTRLS--VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            C+L+   P S ++       V+  T DGF++AE+DL+QR  GE LG +Q+G  +  +A 
Sbjct: 712 YCLLI---PESDDALENERLSVMVETNDGFVLAEKDLQQRGPGEFLGTRQAGFSELKMAN 768

Query: 649 PELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
                 ++E AR+ A+ I  QDP+L+      +   L  +  N  
Sbjct: 769 LT-DVHIIEKARQQAQLIFQQDPELSLPEHTLLAKKLGEFWRNGR 812


>gi|293365912|ref|ZP_06612615.1| DNA helicase RecG [Streptococcus oralis ATCC 35037]
 gi|307702316|ref|ZP_07639274.1| ATP-dependent DNA helicase RecG [Streptococcus oralis ATCC 35037]
 gi|291315590|gb|EFE56040.1| DNA helicase RecG [Streptococcus oralis ATCC 35037]
 gi|307624119|gb|EFO03098.1| ATP-dependent DNA helicase RecG [Streptococcus oralis ATCC 35037]
          Length = 671

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 241/687 (35%), Positives = 382/687 (55%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQSLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  N+PFS T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTVVKENLPFSLTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PDLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD + Y  L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYACLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLIANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSMEGWKEDPEWRMIALHLEKKEH 669


>gi|149006640|ref|ZP_01830339.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP18-BS74]
 gi|307127909|ref|YP_003879940.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 670-6B]
 gi|147761938|gb|EDK68901.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP18-BS74]
 gi|306484971|gb|ADM91840.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 670-6B]
 gi|332072867|gb|EGI83348.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA17545]
          Length = 671

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 241/687 (35%), Positives = 386/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLNGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIETWQEDPEWRMIALHLEKKEH 669


>gi|319637789|ref|ZP_07992555.1| ATP-dependent DNA helicase RecG [Neisseria mucosa C102]
 gi|317400944|gb|EFV81599.1| ATP-dependent DNA helicase RecG [Neisseria mucosa C102]
          Length = 729

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 241/666 (36%), Positives = 365/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 66  AKKLEKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 118

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK   +   M+HP  
Sbjct: 119 FKPRKQLIVQIADGSGSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEMIHPKI 178

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
               S  +    +  +Y    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 179 RDAESSGL-AESLTPIYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLKLPHLA 236

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 237 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTATSLGGDG 296

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q +   +PF+ T +QE  + +IL DM+Q + M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 297 TLTQALRHALPFALTDAQEKVVSEILHDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIE 356

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   + V  ++G+  +  + +A  ++A G   I 
Sbjct: 357 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGTVKIA 416

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D +++  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 417 VGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRTLAMSF 476

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE +   
Sbjct: 477 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEESETLQ 536

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+DV 
Sbjct: 537 LQTATETLAQLQAALPELNIGLVHGRMKAAEKAEVMAQFAVGRLNVLVATTVIEVGVDVP 596

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+    DGF
Sbjct: 597 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGF 656

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A  E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 657 EIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPLLIEQNPEI--VEA 714

Query: 679 QSIRIL 684
              R L
Sbjct: 715 HLARWL 720


>gi|296112326|ref|YP_003626264.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis RH4]
 gi|295920020|gb|ADG60371.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis RH4]
 gi|326561837|gb|EGE12172.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 7169]
 gi|326563383|gb|EGE13648.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 12P80B1]
 gi|326568942|gb|EGE19011.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis BC1]
          Length = 698

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 250/675 (37%), Positives = 374/675 (55%), Gaps = 30/675 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++   GVG+  +  L+++         R  D+L + P  + DR     I ++S    V 
Sbjct: 11  PVTALSGVGQALAGRLAEL------GIHRIFDMLLHLPRDYEDRSRVIAIKDVSHGMSVL 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G ++       + R    + L D TGEITL FF+    +L  +   G KITV G+IK 
Sbjct: 65  VAGVVTWVE----KNRTGLSVTLEDATGEITLRFFHTYPSLLTTMM-VGAKITVFGEIKV 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWIE 190
            +    M HP Y    ++     L+  +Y    G++ +  ++++  AL+ +       + 
Sbjct: 120 SRYGTQMSHPDYHLTGTKKFESGLL-PIYPTIKGINQNKLRQLVRLALTAVQQDGIHGLS 178

Query: 191 KDLLQKKSFP---SIAEAFNIIHNPRKAKDF-----------EWTSPARERLAYDELLAG 236
           +  L+         +  A   +H P    D            + T PA  R+  +EL+A 
Sbjct: 179 ETQLKAAGVELTGDLLPALKAVHLPEIHADIFSQTALLAGLKDRTHPACRRIIIEELVAH 238

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q++ L  R    +      +    +A++++  +PF  T +Q+  I + + DM+    MLR
Sbjct: 239 QVSFLFRRNHIYQYKAPKCDPISPLAKQLVAGLPFELTAAQKRVIDEAVSDMATSRPMLR 298

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVG+GKTLVA +    A+++G Q  +MAP  ILA+QH    +K+ +   I V  + 
Sbjct: 299 LIQGDVGAGKTLVAAMTACYALDSGWQVAVMAPTEILAEQHLINFQKWFEPLGIGVGWLA 358

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G      R  AL+ I   Q  I++GTHALF D++ + KL LVI+DEQHRFGV+QRL+LT 
Sbjct: 359 GKQTAKERTAALDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQHRFGVEQRLRLTN 418

Query: 417 KATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           K  +   PH L MTATPIPRTL ++  GD+D+S I E P  R PI TV I  +R DEVIE
Sbjct: 419 KGVSGGAPHQLAMTATPIPRTLAMSMYGDMDVSIIDELPPKRTPITTVTINRDRRDEVIE 478

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           R++     GK+AYW+CP +EE    + +S    +  L +       +IHG+M   DK++V
Sbjct: 479 RIQNNCQAGKQAYWVCPLVEESSALDVQSAQLTYEDLSDRLDIRTGLIHGKMKAADKQAV 538

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +FK G   LLIATTVIEVG+DV +AS+++IENAE  GL+QLHQLRGRVGRG   S C+
Sbjct: 539 MQAFKAGDIDLLIATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRVGRGSAKSFCV 598

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLS     RL+VLK++ DGF+IA++DL+ R  GE+LG +Q+G   + +A     +
Sbjct: 599 LLYQLPLSPTGIERLNVLKDSTDGFVIAQKDLELRGAGELLGKRQTGDMGYYLADIVRDE 658

Query: 654 SLLEIARKDAKHILT 668
           +LLE A   A  ++ 
Sbjct: 659 ALLEAAGDIACQLIK 673


>gi|238019125|ref|ZP_04599551.1| hypothetical protein VEIDISOL_00987 [Veillonella dispar ATCC 17748]
 gi|237863824|gb|EEP65114.1| hypothetical protein VEIDISOL_00987 [Veillonella dispar ATCC 17748]
          Length = 680

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 234/653 (35%), Positives = 371/653 (56%), Gaps = 15/653 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+T +G+G      L K+        T    LL Y P S+ DR    +I E+       +
Sbjct: 5   LTTIKGIGPGREKQLHKL------GITNVTSLLTYFPRSYEDRRTIYRIGELKSGMTGGV 58

Query: 73  TGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +      + + R    ++++ DGTG + ++ F +     KN + +G+++   GK + 
Sbjct: 59  MGNVIAVQEKRPRPRLSILEVVIADGTGPLKIVLFNQG--YKKNFYKKGQRLYAYGKAEF 116

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
               + M  P              I  +Y+L  G+S  + +  +    +    L E +  
Sbjct: 117 QYGAMQMNTPQIENLGDGGEPDRGIVPIYALADGVSQFVVRSSVRNWFAANHELQEILPA 176

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           ++ +   + S  +AF ++H P  ++ +E     R +LAY+EL   Q  L L+R + +   
Sbjct: 177 EVREAHQYMSRYDAFKMMHFPASSERYEEA---RHQLAYEELFVMQSGLALLRNKEQCHK 233

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G  +   G +  + + N+PFS T  Q+ A++DI  DM  +  M R+LQGDVGSGKT+VA 
Sbjct: 234 GSKMGPNGDLMAQCIENLPFSLTGDQQRALEDIRIDMEDERPMQRLLQGDVGSGKTVVAT 293

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +++  A+E G Q  +MAP  ILA QHYE I +  +N  I +E++TG+  +  + +  E +
Sbjct: 294 LSLLKAIENGYQGALMAPTEILAAQHYEGITEVCRNLGITIELLTGSTTKKEKERIYEGL 353

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A G  ++IIGTHAL Q+ + ++ L LVI+DEQHRFGV+QR +L QK T PHVL+MTATPI
Sbjct: 354 ADGSINMIIGTHALIQEGVNFHNLGLVIIDEQHRFGVEQRARLQQKGTYPHVLIMTATPI 413

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRT+ L+  GD+ +S I E P GRKP+KT  +  +  + +       ++EG++ Y +CP 
Sbjct: 414 PRTMTLSVYGDLAVSLIKEMPPGRKPVKTYAVDSSYKERLRNFFGKEMAEGRQVYVVCPL 473

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +EE ++ + ++  E +  L E+F  +  + ++HGRM   +K+ VM++F  G   LL++TT
Sbjct: 474 VEESEKLDLQAAEELYLELKEYFYKAYEVGLVHGRMKPSEKDEVMNAFHKGDISLLVSTT 533

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVG++V +A+I+ IE AE FGL+QLHQLRGRVGRG   S CIL+     +  S  RL 
Sbjct: 534 VIEVGVNVPNATIMCIEGAERFGLSQLHQLRGRVGRGSHQSYCILVSDSK-NDVSQERLK 592

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +++ T+DGF +AE+DL  R  G++ G+ QSG+P   +A       +L  ARKD
Sbjct: 593 LMEQTQDGFELAEQDLLLRGSGQLFGLAQSGLPDLRVANIIKDIEILVQARKD 645


>gi|229104417|ref|ZP_04235086.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-28]
 gi|228679115|gb|EEL33323.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-28]
          Length = 682

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 228/681 (33%), Positives = 372/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLNRYKLLPRYEALRALHFPVGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSTELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR+ 
Sbjct: 292 VVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMAVELLTSSVKGARRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L R+  G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LARLEQGEVDILVGTHALIQGEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  +++G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEITKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAI 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  S+R  L 
Sbjct: 651 LVDSEAFWHNDQYASLRTYLD 671


>gi|317475642|ref|ZP_07934903.1| ATP-dependent DNA helicase RecG [Bacteroides eggerthii 1_2_48FAA]
 gi|316908212|gb|EFV29905.1| ATP-dependent DNA helicase RecG [Bacteroides eggerthii 1_2_48FAA]
          Length = 698

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 236/689 (34%), Positives = 374/689 (54%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +         F DLL+Y P  ++DR     I EI
Sbjct: 1   MFDLTTRDIKYLSGVGPQRASVLNKEL-----GIFSFHDLLYYFPYKYVDRSRIYYIQEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +    ++R      +DGTG + L++F +  + L   +   ++ 
Sbjct: 56  DGTMPYIQLKGEILGFETAGEGRQRRLIAHFSDGTGVVDLIWF-QGIKYLIGKYKVHQEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            V GK      RI + HP     +   ++   ++  Y+         L+    +K++   
Sbjct: 115 IVFGKPSVFNGRINIAHPDIDPASELKLSAMGLQPYYNTTEKMKRSSLNSHAIEKMMKNI 174

Query: 179 LSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + +L   LPE +   LL +     + EA   IH P      +    A  RL ++EL   Q
Sbjct: 175 VRQLDEPLPETLSPALLAEHHLMPLTEALMNIHFPVSP---DVLRKAEYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + +K  G      G        RN+PF  T +Q+  +K+I +D+    +M 
Sbjct: 232 LNILRYAKDRQRKYRGYVFEKVGDTFNGFYSRNLPFELTNAQKRVLKEIRRDLGSGRQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHY+ I++      + VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLMALDNGYQACMMAPTEILANQHYDTIRELLYGMDVRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G   I+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L 
Sbjct: 352 TGSIKGKRREAILSGLLTGDVQILIGTHAVIEDTVNFASLGLVVIDEQHRFGVAQRARLW 411

Query: 416 QKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            K+T  PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    +    +   
Sbjct: 412 AKSTQPPHILVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDSHRVSLYRS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P I+E ++ + +++ E F  + E F    +  ++G+M   +K++ 
Sbjct: 472 VRKQIEEGRQVYIVYPLIKESEKIDLKNLEEGFLHICEEFPDCKVCKVYGKMKPAEKDAQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MQLFVSGEAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+    L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTGYKLAEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ I+ +DP+      + +
Sbjct: 652 GQLLQYVRGVAESIVDKDPNGELPENEIL 680


>gi|225012820|ref|ZP_03703254.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium MS024-2A]
 gi|225003094|gb|EEG41070.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium MS024-2A]
          Length = 699

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 238/703 (33%), Positives = 381/703 (54%), Gaps = 23/703 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++P+   ++  +GVG + +  L + +     N   F DLL + P+ +IDR     I E+ 
Sbjct: 1   MDPMQTEITYLKGVGPERARLLKEEL-----NIKTFQDLLHFFPNRYIDRSRFHPIKELP 55

Query: 66  E-ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
                V I G I+     Q ++ +       D TG + L++F R  + L+      ++  
Sbjct: 56  TTNAEVQIKGIITSIDYIQQKRGKRMVANFQDETGSMQLVWF-RGYQWLRESIRINQQYV 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPT-----GLSVDLFKKIIVEA 178
           + G+I   K +  M HP     +            +Y         G+S  + +K++   
Sbjct: 115 IFGRINWFKGQASMPHPELELESVFQQGVKAAFYPIYPSSEKLINKGVSQRVIQKLVATL 174

Query: 179 LSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L        E + + LL    F S  EA + +H P         S A+ RL ++E    Q
Sbjct: 175 LQLKEAEFSETLPQYLLNHFKFISKKEALHQVHYPSTQNLL---SRAQMRLKFEEFFYMQ 231

Query: 238 I-ALLLMRKQFKKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           +  +L  R++ +K  G      G + +     ++PF+ T++Q+  +K+I  D+    +M 
Sbjct: 232 LQLILKNRQRKQKIKGYVFPEVGSVFKDFFDNHLPFTLTEAQKRVVKEIRNDLGTGRQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT+VAL+AM  A++ G Q+ ++AP  ILAQQHY+ +    + T +   ++
Sbjct: 292 RLLQGDVGSGKTIVALLAMLIAIDNGFQSTLVAPTEILAQQHYQSLDALLEGTGVQCALL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG+  +  R    E +  G+  I++GTHA+F++ +Q+  L + I+DEQHRFGV QR KL 
Sbjct: 352 TGSSTKKERVVLHEALESGELSILVGTHAVFEEKVQFQNLGIAIIDEQHRFGVAQRAKLW 411

Query: 416 QKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
           QK    PHVL+MTATPIPRTL ++  GD+DIS I   P GRKPIKT+    N    V   
Sbjct: 412 QKNDIPPHVLVMTATPIPRTLAMSIYGDLDISIIDTLPPGRKPIKTLHRFDNNRLAVFAF 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKE 531
           +K  ++ G++ Y + P I+E +  +++ +++ + S+   F    + I+I+HG+M   DK 
Sbjct: 472 VKEQINLGRQIYIVYPLIQESESLDYKDLMDGYESISRSFPPPKNQISIVHGKMKPEDKA 531

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             M+ F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E S 
Sbjct: 532 YEMERFVRGKTQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGSEQSY 591

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C+L+    LS+   TRL  +  + DGF IAE DL+ R  G ++G +QSG+ +  IA    
Sbjct: 592 CVLMSGSKLSEEGKTRLQTMVKSNDGFEIAEVDLRLRGPGNLMGTQQSGVLQLKIADVIK 651

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
              LL+ AR  A+ I+ +D    +   Q I+  L   +++   
Sbjct: 652 DTELLKAARDTAQQIIKKDAAFDNREHQVIKRTLSALKHDSNI 694


>gi|218961965|ref|YP_001741740.1| ATP-dependent DNA helicase RecG [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730622|emb|CAO81534.1| ATP-dependent DNA helicase RecG [Candidatus Cloacamonas
           acidaminovorans]
          Length = 699

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 234/700 (33%), Positives = 378/700 (54%), Gaps = 23/700 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + +   +GVG+  +  LSK+           +DL+ + P  +I R     + ++    
Sbjct: 10  LNSEVKYLKGVGEHRAQLLSKL------GIKTILDLMEHFPKVYISRKLSVTLGDLKPGD 63

Query: 69  IVTITGYISQHSSFQL-QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           ++  T  IS     Q  + R    I ++DG   I   +F       + +F  GR + + G
Sbjct: 64  MLAFTAVISWVDVHQTAKGRNILSIGVSDGKVGIICSWFTYPPVY-EKMFLPGRLVWLNG 122

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFP------LIEAVYSLPTGLSVDLFKKIIVEALSR 181
            I +   ++ MVHP +   +  +           +  VY L  G++  L +++I  A + 
Sbjct: 123 TITEFNGQLEMVHPEFELIDDWEDTKEDFWKNREVLPVYPLTEGINQKLMRRLIYNAFAL 182

Query: 182 LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
               + E + ++++ K  F     A   +H  +   + E     R R AY++    Q+  
Sbjct: 183 YAGFIEEKLPENIIAKHHFLERKTALQKMHFGQNPAEIE---KVRRRFAYEDFFYTQLLW 239

Query: 241 LLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
              +     K  GI    + ++   + + +PF+ TK+Q+  + +I  DM  + +M R+LQ
Sbjct: 240 ARHKTFHTTKTKGIKFINKKQLTTGVYKKLPFTLTKAQKKVLWEIFADMCSEKQMSRLLQ 299

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+V L AM  AVE G Q+ +MAP  ILA+QHYE I    +  ++ V ++ G +
Sbjct: 300 GDVGSGKTVVTLFAMLLAVENGYQSALMAPTEILAEQHYETITNLLKGFEVQVCLLKGGV 359

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +    + IA G A I+IGTHAL Q  I + +L    VDEQHRFGV+QR KL   A 
Sbjct: 360 -YKGKEAIKKAIAEGSAQIVIGTHALLQKDINFKRLGFACVDEQHRFGVEQRAKLANLAE 418

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P +L ++ATPIPR+L +T  GD+++S + E P  RKP++T+I P ++ID V   ++  L
Sbjct: 419 HPDLLYLSATPIPRSLAMTVYGDLEVSILDELPPTRKPVRTIIRPSSKIDTVYSEVRQEL 478

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSF 537
           + G++ Y +CP +EE ++       + +  + +        +++HGRM   +K+ +M  F
Sbjct: 479 ALGRQVYIVCPLVEESEKIALLDATKLYEYISQKVFPEYPASLLHGRMPVKEKDMIMQKF 538

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  K+L++TTVIEVG+DV +AS++I+E+AE FGLAQLHQLRGRVGRG   + C L+ H
Sbjct: 539 KAGEIKILVSTTVIEVGVDVPNASVMIVEHAERFGLAQLHQLRGRVGRGSAQAYCYLIEH 598

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            P+S+ ++ RL+ +  T DGF+IAE+DL+ R  GEI G +QSG+P F  A       +L 
Sbjct: 599 SPVSEVAWQRLTTMTKTTDGFIIAEKDLELRGPGEIFGYEQSGLPVFRFANLVRDQEILR 658

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
           +AR+DA  I+  DPD        ++  +Y  Q+ +  + I
Sbjct: 659 LARQDAFEIVHADPDFELPENALLK-KIYFSQFTDKEKLI 697


>gi|265767075|ref|ZP_06094904.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_16]
 gi|263253452|gb|EEZ24928.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_16]
          Length = 698

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 234/689 (33%), Positives = 370/689 (53%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +           DLL+Y P  ++DR     I EI
Sbjct: 1   MFDLTTRDIKYLSGVGPQKAAVLNKELE-----IYSLHDLLYYFPYKYVDRSRIYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +F   ++R      +DGTG + L++F +  + + N +    + 
Sbjct: 56  DGNMPYIQLKGKILGFETFGEGRQRRLLAHFSDGTGVVDLVWF-QGIKYVTNKYKLHEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            V GK      RI + HP         ++   ++  Y+         L+    +K++   
Sbjct: 115 IVFGKPTVFNGRINVAHPDIDSPADLKLSSMGLQPYYNTTEKMKRSFLNSHAIEKMMATV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + ++   L E +   L+      S+ +A   IH P      E    A+ RL ++EL   Q
Sbjct: 175 IGQIQEPLSETLSPKLIADHHLMSLTDALRNIHFPSNP---ELLRKAQYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + +K  G      G+I      +N+PF  T +Q+  +++I QD+    +M 
Sbjct: 232 LNILRYAKDRQRKYRGYVFETVGEIFNTFYSKNLPFELTGAQKRVLREIRQDVGCGKQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHY+ I++      + VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLMALDNGFQACMMAPTEILANQHYDTIRELLFGMDVRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G  HI+IGTHA+ +D++ +  L L ++DEQHRFGV QR +L 
Sbjct: 352 TGSVKGKKREAILAGLLTGDVHILIGTHAVIEDTVNFASLGLAVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   
Sbjct: 412 SKSVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRRESLYRS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ 
Sbjct: 472 VRKQIEEGRQVYIVYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CI
Sbjct: 532 MQLFISGDAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+    L++ +  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTTYKLTEETRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ I   DP         +
Sbjct: 652 GQLLQYVRTIAEEITDADPGGVLPENAIL 680


>gi|299821767|ref|ZP_07053655.1| DNA helicase RecG [Listeria grayi DSM 20601]
 gi|299817432|gb|EFI84668.1| DNA helicase RecG [Listeria grayi DSM 20601]
          Length = 682

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 235/680 (34%), Positives = 375/680 (55%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS  +GVG++ +    ++            DLL+  P  + D      + ++++E  +T
Sbjct: 8   PLSALKGVGEETAKHFHELA------IDTIADLLWNFPHRYEDYR-LKDLMDVADEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++D    + + FF +    LKN    G  +TV+GK 
Sbjct: 61  IQGEVLTEATIAFYGRKKSKLSFRISDHEQVVKVDFFNQ--PYLKNNIVVGETVTVSGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLPEW 188
            K + +I            +      +E VY L   +     +K + +AL   L  + E 
Sbjct: 119 NKARAQITGS----KLKKGELQEEQELEGVYRLKGTIRNKTIQKYVKQALDLYLQDIEEI 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I    L+K       EA   +H P+     +    AR R  Y+E L  Q+ +   RK + 
Sbjct: 175 IPPKWLEKYQLIGRQEALATMHFPKSE---DALKQARRRFVYEEFLLFQLKMQFFRKLER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI I+ + +  +  +  +PF  T +Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISIDYDVEKLRHYIEGLPFPLTSAQKRVVNEICGDMKSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AAV++G QA +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAVQSGFQAALMVPTEILAEQHANSLVELLQPLDITVALLTSSVKGKKRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L+ +  G   +++GTHAL Q+ + + KL LVI DEQHRFGV+QR  L +K   P VL MT
Sbjct: 352 LQLLEDGAIDVVVGTHALIQEEVVFSKLGLVITDEQHRFGVKQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G++ Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKAIETFWVKHEMLDRVIGFMEKEIQKGRQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSL--HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ +N L    H    + ++HG++   +KE +M  F       L
Sbjct: 472 ICPLIEESEKLDVQNAIDVYNILEQKWHGRHKVGLMHGKLLPAEKEDIMRDFNENNLDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG E S CIL+ +P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGSEQSYCILIANPK-TEVGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+S++  T DGF+++E DL+ R  GE  G KQSG+P+F +A       +LEIAR+DA  
Sbjct: 591 ERMSIMTETNDGFVVSERDLELRGPGEFFGSKQSGVPEFQVADMVHDYRVLEIARQDAAE 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++  +    +   Q++   L
Sbjct: 651 LIFTENLTENPAYQALYAQL 670


>gi|322377446|ref|ZP_08051937.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M334]
 gi|321281646|gb|EFX58655.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M334]
          Length = 671

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 239/687 (34%), Positives = 383/687 (55%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T +QE ++++IL DM     M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKASLPFALTPAQEKSLQEILTDMKSDYHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQGLF--PDLKLALLTGSLKVAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G++ +IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGESDLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRVLREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAKVALLHGKMKSDEKDQIMQDFKERKTN 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFILAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEGWQEDPEWRMIALHLEKKEH 669


>gi|55823618|ref|YP_142059.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus
           CNRZ1066]
 gi|55739603|gb|AAV63244.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 672

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 242/692 (34%), Positives = 387/692 (55%), Gaps = 33/692 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  +G G K +   +K+      +     DLL Y P  + D      I E+ +  
Sbjct: 4   LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYEDF-KSKSIFELMDGE 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      +  G   I + FF +    L + F  G ++ + 
Sbjct: 57  KAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAINFFNQ--PYLVDKFEVGAEVAIF 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPV 184
           GK  + K+ +  +    +  + +D     ++ VY +  G+S     K I  A     L +
Sbjct: 115 GKWDRKKSAVTGMK---VLAHVEDD----MQPVYHVAQGVSQAQLIKAIKVAFDSGALNL 167

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + L+ K       EA  ++H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 168 LEESLPQVLMDKYRLMGRQEAVRVMHFP---KDLAEYKQALRRIKFEELFYFQMNLQVLK 224

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E   + I+ +    +  +  +PF  TK+QE ++ +IL DM     M R+LQGDVG
Sbjct: 225 AENKSETNGLAISYDEVKIKAKIATLPFPLTKAQERSLSEILADMKSGAHMNRLLQGDVG 284

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A +AM  A  AG Q+ +M P  ILA+QHY+ +K      ++ V ++T  M  A 
Sbjct: 285 SGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSLKGLF--PELKVVLLTSGMKMAD 342

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++ AL +I  G+A +I+GTH+L QD++ Y+KL LVI DEQHRFGV QR    +K   P V
Sbjct: 343 KKVALSKIESGEAQMIVGTHSLIQDAVIYHKLGLVITDEQHRFGVNQRRIFREKGDNPDV 402

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I + PAGRK I T  +   ++D V+  +K  L +  
Sbjct: 403 LMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKTIITRWVKHEQLDTVLTWIKSELEKDA 462

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++ V     L E F  S  +A++HGRM + +K+ +M  FK+  
Sbjct: 463 QVYFISPLIEESESLDLKNAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKDKK 522

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L+ +P  +
Sbjct: 523 SQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVLVANPK-N 581

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                R+  +  T DGF++AEEDLK R  GEI G +QSG+P+F +A      ++LE AR+
Sbjct: 582 DTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADTVEDYNILEEARR 641

Query: 662 DAKHILTQDPDL-TSVRGQSIRILLYLYQYNE 692
            A  I++ DP+   +   Q +    +L   +E
Sbjct: 642 VASQIVS-DPNWRENPDWQVLEA--HLRNQDE 670


>gi|325295454|ref|YP_004281968.1| ATP-dependent DNA helicase RecG [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065902|gb|ADY73909.1| ATP-dependent DNA helicase RecG [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 818

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 253/710 (35%), Positives = 410/710 (57%), Gaps = 24/710 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +   F P+ST +G+ KK    L K+           +D ++Y P  + DR     +S + 
Sbjct: 118 IKAFFQPISTIKGIKKKTVERLKKLS------IETILDAIYYLPFRYEDRTTITPMSFLK 171

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFY----RKTEMLKNVFFE 119
             ++  + G +      +  K++   + +   D TG +TL+F         +ML +   E
Sbjct: 172 PGQVFLVKGKVVNVLVIETSKKKKKILKVILYDKTGTVTLIFLQERVLNYYKMLFSKAKE 231

Query: 120 -GRKITVTGKIKKLKNRIIMVHPHYIFHN---SQDVNFPLIEAVYSLPTGLSVDLFKKII 175
             +++   G +K+      MVHP     +    +     +I  VY    G+     +K I
Sbjct: 232 LEKEVLAYGIVKREMGSYSMVHPEVEIFDKNRGKLEKLGVILPVYHSSEGIKQSTIRKDI 291

Query: 176 VEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP--RKAKDF-EWTSPARERLAYD 231
              + R +P LPE++ ++LL++ SFP IA AF  +H P    A+D   + +P+++R+ +D
Sbjct: 292 GNIVKRVIPFLPEYLPQELLKRYSFPDIATAFWRVHFPFDEDAQDLLNFKTPSQKRVIFD 351

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           EL   Q+AL L +++ K E GI   V+ ++  +  + +PFS T +QE  +++I++DM + 
Sbjct: 352 ELFLFQLALALHKQKIKGEKGIAFPVKKELVDEFKKALPFSLTNAQEKVLREIMEDMKKD 411

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVGSGKT+VA  A   A ++G Q  +MAP  ILA QH++  +++ +   I 
Sbjct: 412 EPMNRLVQGDVGSGKTVVAAAAAFFAAKSGYQTAVMAPTEILANQHFKKFREFLKPFSIK 471

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V ++TG+M +  +      I  G   +++GTHAL Q+++++  L L I+DEQHRFGV+QR
Sbjct: 472 VGLLTGSMTKKEKETMYRAIKEGFIQVVVGTHALIQETVEFKNLGLAIIDEQHRFGVKQR 531

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           ++L +K   P VL+MTATPIPRTL +T+ GD+DIS I E PAGRKPIKT I+  +  D +
Sbjct: 532 VELKKKGKLPDVLVMTATPIPRTLAMTAYGDLDISVIDELPAGRKPIKTKILFEDERDTL 591

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDK 530
           +  L   L    + Y + P IEE ++   ++  E  +   +     S+ ++HG+M   +K
Sbjct: 592 VRFLLKELKMKNRVYIVYPLIEESEKLELKAATEMHHYWEKKLKPYSVGLLHGKMKQEEK 651

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + +M+ FK G  ++L++TTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG   S
Sbjct: 652 DEIMEKFKRGEYQVLVSTTVIEVGVDVPEATVMVIEHAERFGLAQLHQLRGRVGRGNRQS 711

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C L+    +S++S  RL VL++T DGF IAE DL+ R  GEI G +QSG+  F IA   
Sbjct: 712 YCFLITKRSISEDSIKRLRVLESTNDGFKIAEADLQFRGPGEIFGTRQSGLGDFKIADLR 771

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
               +L+IAR++A+ ++ ++P+L  +        L  +++ E F F+  G
Sbjct: 772 RDFEILKIAREEAQKLVERNPELEGLNDLK---ELMRFRFGEKFDFVEVG 818


>gi|228954132|ref|ZP_04116160.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805452|gb|EEM52043.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 682

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 227/681 (33%), Positives = 372/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G I      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKIHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLKLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLGRYKLLPRYEALRALHFPVGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSVELQEFIDALPFPLTGAQHRVVDEILKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + A+  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR+ 
Sbjct: 292 VVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGARRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAI 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  ++R  L 
Sbjct: 651 LVDSEAFWHNDQYAALRTYLD 671


>gi|169834385|ref|YP_001695073.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168996887|gb|ACA37499.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 671

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/687 (34%), Positives = 385/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLNGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ ++   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLDWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEAWQEDPEWRMIALHLEKKEH 669


>gi|190570903|ref|YP_001975261.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019420|ref|ZP_03335226.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357175|emb|CAQ54590.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212994842|gb|EEB55484.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 673

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 269/672 (40%), Positives = 388/672 (57%), Gaps = 19/672 (2%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ 85
                I        R +DLLFY P S++DR     + +       T    + +H    ++
Sbjct: 16  KFHSAILPKLCGGDRVMDLLFYRPLSYVDRSK--SLPDAQVGEFTTFVAKVYEHQRPTVR 73

Query: 86  KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145
            R PYKI++   +  + ++FF    + L  +F  G  I ++GK++K   R  + HP Y+ 
Sbjct: 74  GR-PYKIIVESESQYLFIVFFNYSVKYLYKLFPVGTDIVISGKLEKFAERWQITHPDYML 132

Query: 146 HN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
            + +Q      IE +Y L  G++    + II   L  LP LPEWI++ L+++K + +  E
Sbjct: 133 SDINQFKEIACIEPIYQLCRGITNKSIRNIISSNLKDLPDLPEWIDETLIKQKKWLNWKE 192

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
           +   +H P    + E     RERLAYDEL A Q+AL L R+   K+ G    +  K  ++
Sbjct: 193 SIIRLHRPSSLAEAE---VCRERLAYDELFAYQLALKLARENHVKKEGKEFIILSKYKEQ 249

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +L  +PF  T  Q  AI +I +    + RM+ +LQGDVGSGKT+VAL AM   VE   QA
Sbjct: 250 VLNELPFQLTNDQIRAIDEISERQKSRYRMVSLLQGDVGSGKTVVALFAMLNVVENNMQA 309

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  ILA+QHY +I++    T I V ++TG   +  R+  +  +A G  +I+IGTHA
Sbjct: 310 ALMAPTTILAEQHYNWIEEALSCTDIKVALLTGKTARKERKIIMNELASGILNIVIGTHA 369

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           LFQ ++ +  L L ++DEQ RFGV QR +L  K     +L +TATPIPRTL     GD++
Sbjct: 370 LFQANVTFKNLGLAVIDEQQRFGVIQRNRLVGKGENTDILFVTATPIPRTLQQAMYGDVE 429

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            S + EKP  R PIKTVI+ + ++ ++I+RLK  ++ G+KAYWICP IEE +E N  +  
Sbjct: 430 CSILREKPKSRLPIKTVIMNVKKVSDIIQRLKDAINRGEKAYWICPYIEENEELNIAAAE 489

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            RF  L + F   + IIHG+++   K+ VM SFK     LL+ATTVIEVGIDV DA+I+I
Sbjct: 490 MRFQELQKTFFDRVGIIHGKLTQEQKDQVMFSFKRNEFSLLVATTVIEVGIDVPDATIMI 549

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           IENAE FGL+QLHQLRGRVGRG + S C+LLY   LSK+SY++L ++  ++DGF IAE+D
Sbjct: 550 IENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYD-NLSKSSYSKLKIMCESQDGFYIAEKD 608

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           +  R  G+ILG KQSG  +F  A       LL +A   AK  +            +  +L
Sbjct: 609 MMLRGSGDILGTKQSGCMEFKFADLYEDRELLNLAYNSAKGTIA-----------NFELL 657

Query: 685 LYLYQYNEAFQF 696
           L +++Y     F
Sbjct: 658 LDIFEYRSRLHF 669


>gi|189463789|ref|ZP_03012574.1| hypothetical protein BACINT_00122 [Bacteroides intestinalis DSM
           17393]
 gi|189438739|gb|EDV07724.1| hypothetical protein BACINT_00122 [Bacteroides intestinalis DSM
           17393]
          Length = 698

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 236/689 (34%), Positives = 374/689 (54%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L +  +    GVG + +  L+K +     N     DLL+Y P  ++DR     I EI
Sbjct: 1   MFDLASRDIKYLSGVGPQRASVLNKEL-----NIYSLHDLLYYFPYKYVDRSRIYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +    ++R      +DGTG + L++F +  + L   +   ++ 
Sbjct: 56  DGTMPYIQLKGEILGFETIGEGRQRRLIAHFSDGTGIVDLVWF-QGIKFLVGKYKVHQEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            V GK      RI + HP     +   ++   ++  Y+         L+    +K++   
Sbjct: 115 IVFGKPSVFNGRINIAHPDIDNASELKLSTMGLQPYYNTTEKMKRSSLNSHAIEKMMSAV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + +L   LPE +   +L +     + EA   IH P      E    A+ RL ++EL   Q
Sbjct: 175 VQQLREPLPETLSPAILTEHHLMPLTEALMNIHFPANP---ELLRKAQYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + +K  G      G+I      +N+PF  T +Q+  +K+I +D+    +M 
Sbjct: 232 LNILRYAKDRQRKYRGYVFETVGEIFNTFYAKNLPFELTGAQKRVLKEIRRDVGSGKQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QH+E I++      I VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLIALDNGYQACMMAPTEILANQHFETIRELLYGMDIRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G   I+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L 
Sbjct: 352 TGSVKGKKREAILTGLLTGDVRILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            + A  PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+         + + 
Sbjct: 412 TKNAQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIVTIHKYDAHRVSLYQS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +   ++EG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M  ++K++ 
Sbjct: 472 VHRQIAEGRQVYIVYPLIKESEKIDLKNLEEGYLHICEEFPGCKVCKVHGKMKAVEKDAQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MQLFVSGEAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+    L + +  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTGYKLVEETRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ ++  DP       + +
Sbjct: 652 GQLLQYVRNVAEEVVDADPTGIRPENEIL 680


>gi|217076377|ref|YP_002334093.1| ATP-dependent DNA helicase RecG [Thermosipho africanus TCF52B]
 gi|217036230|gb|ACJ74752.1| ATP-dependent DNA helicase RecG [Thermosipho africanus TCF52B]
          Length = 769

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 244/702 (34%), Positives = 387/702 (55%), Gaps = 30/702 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L PL  P+   +G+G K +    K+      N      LL + P  + DR     I  + 
Sbjct: 91  LKPLDTPIKYVKGIGPKRAQKFLKL------NVNNVEQLLNFFPRDYEDRRRIIPIPLLR 144

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKT--EMLKNVFFEGRKI 123
           E+  V  TG ++     +         +L+DG  +I L +F +     +LK +    +K+
Sbjct: 145 EDDKVVTTGKLTGVEKVKKGNLTIVSAVLSDGMYQILLKWFNQDFMEGILKGLLR--KKL 202

Query: 124 TVTGKIKK-LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
            V G +KK     + + +P     N    N   I  +Y L  GL+ +  ++II E +  +
Sbjct: 203 YVFGTVKKGFYGSLEIHNPEIELFNE---NKREIFPIYPLTEGLNQNTVRRIISENIYNI 259

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
               E +  DL+ K+    + +A+  +H PR          AR RLAY+E+L  Q+A LL
Sbjct: 260 YNFKEHLPDDLISKRDLLDVYQAYTGMHFPRSNF---HKKAARYRLAYEEILYLQVAFLL 316

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +K+ +K  GI     GK + +++ ++ F  T +Q+ A ++I  D+     M R+LQGDV
Sbjct: 317 SKKENEKIGGISKKFNGKYSTELINSLSFELTNAQKKAYEEIKNDLKSDKPMNRLLQGDV 376

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+V+ +AM    EAG Q+ +M P  ILA Q+++ I  +     I V ++ G    +
Sbjct: 377 GSGKTIVSELAMLDNYEAGFQSAVMVPTSILAIQNFKKIYDHFSRFGIKVALLIGATSNS 436

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            + +  +R+  G   +++GTHAL Q+ + +  L LV++DEQHRFGV+QR +L  K     
Sbjct: 437 EKERIKQRLKDGDIDVVVGTHALIQEDVHFKNLGLVVIDEQHRFGVEQRKELISKGKLVD 496

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+MTATPIPRTL L+  GD+D+S I E P GRKPIKT ++  ++I+EV + +   +  G
Sbjct: 497 TLVMTATPIPRTLSLSLYGDLDVSIIDEMPKGRKPIKTFVVHQSKIEEVYKFVISEVENG 556

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540
            +AY + P I+E ++   +S    +  L + +     + +IHG+MSD +K+ +M  F +G
Sbjct: 557 GQAYIVYPLIDESEKLAVKSATSMYEVLTKEYFPDIPVGLIHGKMSDSEKDDIMYKFASG 616

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L++T+VIEVGIDV  A++I+IENAE FGLAQLHQLRGRVGRG + S C L     +
Sbjct: 617 EIKILVSTSVIEVGIDVPQATVIVIENAERFGLAQLHQLRGRVGRGNKQSYCYLTVG-NV 675

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+ ++ RL+   +T DGF I+E DLK R  GE LG++Q G+P+F +A       ++ +AR
Sbjct: 676 SREAFERLNFFASTNDGFKISEFDLKLRGPGEFLGVRQHGLPEFKVADIINDIDIIMVAR 735

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQ--YNEAFQFIRAG 700
           +DAK+I+  +        +  R L+   +  Y E  + +  G
Sbjct: 736 EDAKYIIENE--------EKYRDLISYVKDLYKERLKLLDVG 769


>gi|206971157|ref|ZP_03232108.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH1134]
 gi|206733929|gb|EDZ51100.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH1134]
          Length = 682

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 227/681 (33%), Positives = 372/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G I      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKIHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLKLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLGRYKLLPRYEALRALHFPVGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +     Q+ +  +PF  T +Q   + +IL+DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSVELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + A+  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR+ 
Sbjct: 292 VVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGARRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKRDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAI 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  ++R  L 
Sbjct: 651 LVDSEAFWHNDQYAALRTYLD 671


>gi|221232431|ref|YP_002511584.1| ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC 700669]
 gi|225855125|ref|YP_002736637.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae JJA]
 gi|298229863|ref|ZP_06963544.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255737|ref|ZP_06979323.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503441|ref|YP_003725381.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           TCH8431/19A]
 gi|220674892|emb|CAR69467.1| ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC 700669]
 gi|225723598|gb|ACO19451.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae JJA]
 gi|298239036|gb|ADI70167.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           TCH8431/19A]
 gi|332199722|gb|EGJ13797.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA41317]
          Length = 671

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/687 (34%), Positives = 385/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++ G++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLIGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLALIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEAWQEDPEWRMIALHLEKKEH 669


>gi|282850344|ref|ZP_06259723.1| ATP-dependent DNA helicase RecG [Veillonella parvula ATCC 17745]
 gi|282579837|gb|EFB85241.1| ATP-dependent DNA helicase RecG [Veillonella parvula ATCC 17745]
          Length = 680

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 232/653 (35%), Positives = 369/653 (56%), Gaps = 15/653 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+T +G+G      L K+        T    LL Y P ++ DR     I ++       +
Sbjct: 5   LTTIKGIGPGREKQLHKL------GITNVTSLLTYFPRTYEDRRTIYSIGDLKSGMTGGV 58

Query: 73  TGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +      + + R    ++++ DGTG + ++ F +     KN + +G++I   GK + 
Sbjct: 59  VGTVIAVQEKRPRPRLSILEVVIADGTGPLKIVLFNQG--YKKNFYKKGQRIYAYGKAEF 116

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
               + M  P              I  +Y+L  G+S  + +  +    +    LPE +  
Sbjct: 117 QYGYMQMNTPQMENLGDGGEPDRGIVPIYALADGVSQFVVRSTVRNWFAANHELPEILPV 176

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           ++ +   + S  +AF ++H P  ++ +E    AR +L+Y+EL   Q  L L+R + +   
Sbjct: 177 EVREDHHYMSRYDAFKMMHFPDSSELYE---KARYQLSYEELFVMQAGLALLRNKEQCHR 233

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G  +   G++  + + N+PFS T  Q+ A++DI  DM  +  M R+LQGDVGSGKT+VA 
Sbjct: 234 GPKMGPNGELMAQCIENLPFSLTGDQQRALEDIRIDMEDERPMQRLLQGDVGSGKTIVAT 293

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +++  A+E G Q  +MAP  ILA QHYE I+    N  I +E++TG+  +  +    E +
Sbjct: 294 LSLLKAIENGYQGALMAPTEILAAQHYEGIRTVCANLGITIELLTGSSTKKEKECIYEGL 353

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A G+  +IIGTHAL Q+ + ++ L LVI+DEQHRFGV QR +L QK T PHVL+MTATPI
Sbjct: 354 ADGRIQMIIGTHALIQEGVNFHNLGLVIIDEQHRFGVDQRARLQQKGTYPHVLIMTATPI 413

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRT+ L+  GD+ +S I E P GRKP+KT  +  +  + +       ++EG++ Y +CP 
Sbjct: 414 PRTMTLSVYGDLAVSLIKEMPPGRKPVKTYAVDSSYKERLRTFFGKEMAEGRQVYVVCPL 473

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +EE ++ + ++  E +  L E+F  +  + ++HGRM   +K+ VM++F  G   LL++TT
Sbjct: 474 VEESEKLDLQAAEELYLELKEYFYKAYEVGLVHGRMKPSEKDEVMNAFHRGEISLLVSTT 533

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVG++V +A+I+ +E AE FGL+QLHQLRGRVGRG   S CIL+     +  S  RL 
Sbjct: 534 VIEVGVNVPNATIMCVEGAERFGLSQLHQLRGRVGRGAHQSYCILVSDSK-NDVSQERLK 592

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +++  +DGF +AE+DL  R  G++ G+ QSG+P   +A       +L  ARKD
Sbjct: 593 LMEQIQDGFELAEQDLLIRGSGQLFGLAQSGLPDLRVANIIKDIEILVKARKD 645


>gi|168491421|ref|ZP_02715564.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           CDC0288-04]
 gi|183574121|gb|EDT94649.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           CDC0288-04]
          Length = 671

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 241/687 (35%), Positives = 385/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAANFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEAWQEDPEWRMIALHLEKKEH 669


>gi|312866410|ref|ZP_07726628.1| ATP-dependent DNA helicase RecG [Streptococcus downei F0415]
 gi|311098104|gb|EFQ56330.1| ATP-dependent DNA helicase RecG [Streptococcus downei F0415]
          Length = 677

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 244/684 (35%), Positives = 382/684 (55%), Gaps = 29/684 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   ++  +G G K +   +K+            DLL Y+P  + D   R  ++++ +  
Sbjct: 9   LDQEIAVLKGFGPKSAEKFTKL------GLYTVEDLLLYYPFRYEDFKAR-SVADLVDGE 61

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              +TG +   ++ Q    KR      +  G   I + FF +    L +    G+++ + 
Sbjct: 62  KAVLTGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAVSFFNQ--PYLADKIELGQEVALF 119

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPV 184
           GK   LK+ +  +    +    QD     ++ VY +  G+S +   K I  A     L  
Sbjct: 120 GKWDALKSALTGMK---LLAQVQDD----MQPVYHVAQGISQNALIKAIKAAFDSGALSE 172

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL K        A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 173 LEENLPQALLAKYRLLDRQTAVRAMHFP---KDLAQYKQALRRIKFEELFYFQLNLQVLK 229

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            Q K E   + I  + +  ++ ++ +PFS T +QE ++ ++L DM     M R+LQGDVG
Sbjct: 230 SQNKSETNGLAIPYKEQAVKQAIQQLPFSLTSAQEQSLGEVLADMKSGAHMNRLLQGDVG 289

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A +AM AA  AG Q+ +M P  ILAQQH+E + K      + V ++T  M  A 
Sbjct: 290 SGKTVIASLAMFAAHTAGFQSALMVPTEILAQQHFESLIKLF--PDLNVALLTVGMRPAV 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++ AL  IA G  ++I+GTH+L QD + Y+KL LVI DEQHRFGV QR    +K   P V
Sbjct: 348 KKAALAGIADGSVNMIVGTHSLIQDGVSYHKLGLVITDEQHRFGVNQRRVFREKGDNPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I + PAGRKPI T  +   +++ V+  L+  +S+G 
Sbjct: 408 LMMTATPIPRTLAITAFGEMDVSIIDQLPAGRKPIITRWVKHEQLETVLTWLQERISQGA 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY I P IEE +  + ++  +    L E F   + +A++HGRM + +K+ +M  FK+G 
Sbjct: 468 QAYVISPLIEESESLDLKNAQDLHQELVEFFGNQAQVALMHGRMKNDEKDQIMQDFKDGQ 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVG++V +++ III +A+ FGL+QLHQLRGRVGRG++ S C+L+ +P  +
Sbjct: 528 SQVLVSTTVIEVGVNVPNSTAIIIMDADRFGLSQLHQLRGRVGRGDKQSYCVLVANPK-N 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+  +  T DGF++AEEDLK R  GEI G +QSG+P+F +A      ++LE ARK
Sbjct: 587 EVGKRRMQAMCQTTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARK 646

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
            A  I+ Q    T  R   +   L
Sbjct: 647 VASQIVAQKNWQTDPRWALLPANL 670


>gi|306834226|ref|ZP_07467346.1| DNA helicase RecG [Streptococcus bovis ATCC 700338]
 gi|304423799|gb|EFM26945.1| DNA helicase RecG [Streptococcus bovis ATCC 700338]
          Length = 671

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 244/684 (35%), Positives = 376/684 (54%), Gaps = 29/684 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + +   +G+G K +    K+      +     DLL Y+P  + D      +SE+++  
Sbjct: 3   LQSSIVELKGIGAKSAEKFYKL------DIYTIEDLLLYYPFRYEDF-KSKSVSELADGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      +  G   I + FF +    L +    G  I + 
Sbjct: 56  KAVITGTVVTPANVQYYGYKRNRLSFKIKQGEAVIAISFFNQ--PYLADKVEIGSDIAIF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-- 184
           GK   LK+ +  +    I    +D     ++ VY +  G+S +   K I  A        
Sbjct: 114 GKWDALKSAVTGMK---ILAQVEDD----MQPVYRVAQGISQNALVKAIKSAFEIGAQNW 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE + + LL K      A+A   +H P   KD      A  R+ ++EL   Q+ L  ++
Sbjct: 167 LPENLPQVLLDKYRLLGRAQATAAMHFP---KDLAEYKQALRRIKFEELFYFQMNLQALK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
              K E   + I  + +     +  +PF+ T  Q  ++ DIL DM     M R+LQGDVG
Sbjct: 224 ADNKSEANGLAIAYDEQKVADKIAALPFTLTGGQRRSLDDILADMRSGGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH+E + +      + + I+T  M  A 
Sbjct: 284 SGKTVVASLAMYATYTAGFQSALMVPTEILAEQHFESLTQLF--PDLSIAILTSGMKTAA 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++ AL  IA G   +I+GTHAL QD++ Y++L LVI DEQHRFGV QR    +K   P V
Sbjct: 342 KQAALSAIADGSVDMIVGTHALIQDAVTYHRLGLVITDEQHRFGVNQRRVFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   +++ V++ +K  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLEVVLDWVKEELQKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
           +AY I P IEE +  + ++ V     L  +F  S  +A++HGRM + +KE++M  FK   
Sbjct: 462 QAYVISPLIEESESLDLKNAVALHEELSAYFADSATVALMHGRMKNDEKEAIMQDFKAQK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG++ S  IL+ +P  +
Sbjct: 522 SQVLVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGDKQSYAILVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T DGF++AE DLK R  GEI G +QSG+P+F +A      ++LE AR+
Sbjct: 581 QTGKERMKIMTETTDGFVLAEADLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARR 640

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
            A  I+++     + + Q +   L
Sbjct: 641 VASQIVSKKDWQNNPQWQIVSQNL 664


>gi|325263998|ref|ZP_08130731.1| ATP-dependent DNA helicase RecG [Clostridium sp. D5]
 gi|324031036|gb|EGB92318.1| ATP-dependent DNA helicase RecG [Clostridium sp. D5]
          Length = 686

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 241/684 (35%), Positives = 378/684 (55%), Gaps = 22/684 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +ST +G+G+K      K      A      DLL Y+P  +        + E  E +  T+
Sbjct: 7   ISTLKGIGEKTQALFEK------AGVRTIGDLLRYYPRGYDVYDDPVLVGEAVEGKTATV 60

Query: 73  TGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           TG I      QL   R  ++    + D TG + +++F  +   LKN    G  IT+ G+I
Sbjct: 61  TGAI--FGRVQLGGSRNMQVTTLYVKDLTGTLKVIWF--RMPFLKNTLARGGIITLRGRI 116

Query: 130 KKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
            + ++ ++M HP   + +++ +     ++ VY L  GL+ +  KK +++A+  L +  E+
Sbjct: 117 VRKRDGLVMEHPEIFYPSAKYEEKRNTLQPVYPLTAGLTNNAVKKAMMQAMEYLDLKQEF 176

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           + +++  +        A   IH P   ++F     ARERL ++E L   ++L  ++ +  
Sbjct: 177 LPEEIRMRYHLAEYNYAVRGIHFPETKEEF---YHARERLVFEEFLIFILSLRKLKTRED 233

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K       VE     K L ++P+  T +Q+    ++ +DMS  + M R++QGDVGSGKT+
Sbjct: 234 KTENCFKFVERPEIDKFLESLPYELTNAQKKVWNEMKRDMSGPHVMSRLVQGDVGSGKTI 293

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRK 366
           VAL+ +  A   G Q  +MAP  +LA+QHYE I    +   I    E++TG+M    +R+
Sbjct: 294 VALLGLMYAGLNGFQGAMMAPTEVLAKQHYENITSMFEKYGIPLKTELLTGSMSAKEKRE 353

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
           A ERI+ G A II+GTHAL Q+   Y  L LV+ DEQHRFGV+QR  L  K   PH+L+M
Sbjct: 354 AYERISSGAADIIVGTHALIQEKAVYRNLALVVTDEQHRFGVKQRETLAGKGQMPHILVM 413

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL +   GD+DIS I E P+ R PIK  ++     +     ++  + EG++ Y
Sbjct: 414 SATPIPRTLAIILYGDLDISVIDELPSNRLPIKNCVVDTGYRNTAYRFMQKQVEEGRQCY 473

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP +E+ +     +V++    L E       I+ +HG+M   +K+ +M++F     ++
Sbjct: 474 VICPMVEDSEHLEAENVMDYTQLLKEALGERFGISYLHGKMKQAEKDEIMEAFGKNEIQI 533

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVGIDV +A++++IENAE FGLAQLHQLRGRVGRG+  S CI +     SK +
Sbjct: 534 LVSTTVIEVGIDVPNATVMLIENAERFGLAQLHQLRGRVGRGKYQSYCIFMSASK-SKET 592

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL +L  + DGF IA EDL+ R  G++ GI+QSG+  F +        +L+ A + A 
Sbjct: 593 KERLEILNKSNDGFFIASEDLRLRGPGDLFGIRQSGLLDFSLGDVFQDSKILQKANEAAL 652

Query: 665 HILTQDPDLTSVRGQSIRILLYLY 688
            +L +DP+LT      ++  L  Y
Sbjct: 653 ELLEKDPELTDENHAKMKAYLNNY 676


>gi|148997750|ref|ZP_01825314.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus
           pneumoniae SP11-BS70]
 gi|148999065|ref|ZP_01826496.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP11-BS70]
 gi|168575113|ref|ZP_02721076.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae MLV-016]
 gi|307068324|ref|YP_003877290.1| RecG-like helicase [Streptococcus pneumoniae AP200]
 gi|147755104|gb|EDK62160.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP11-BS70]
 gi|147756249|gb|EDK63291.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus
           pneumoniae SP11-BS70]
 gi|183578801|gb|EDT99329.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae MLV-016]
 gi|306409861|gb|ADM85288.1| RecG-like helicase [Streptococcus pneumoniae AP200]
          Length = 671

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/687 (34%), Positives = 385/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLNGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERETD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMIETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEVWQEDPEWRMIALHLEKKEH 669


>gi|289668008|ref|ZP_06489083.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 717

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 252/700 (36%), Positives = 382/700 (54%), Gaps = 36/700 (5%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           PS      APLS+  GVG K +   +              DL  + P  + DR     I+
Sbjct: 9   PSLAVAGQAPLSSLPGVGPKVADKFA------ARGILSVQDLWLHLPLRYEDRTRLTTIA 62

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGR 121
           ++       I G +        + R   ++ ++D + G + L FF+ +   +   F  G 
Sbjct: 63  QLQSGVPAQIEGRVDAVER-GFRFRPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FAVGT 120

Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEAL 179
           ++ V G  K  +N   +VHP Y +    +D      ++ VY +  G+     +K+I +AL
Sbjct: 121 RVRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIGQAL 180

Query: 180 SRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDEL 233
            RLP     E +    LQ +  PS+  A   +H P    D         PA++RLA +EL
Sbjct: 181 ERLPPEAALELLPPHWLQDEQLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQQRLAIEEL 240

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA Q++L   R   ++     +   G + Q++ + +PF  T +Q+   + I +D++Q + 
Sbjct: 241 LAHQLSLRRQRIALQRFHAPTLPGNGTLVQQLRKALPFQLTGAQQRVFEQIARDLAQPSP 300

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + +   I + 
Sbjct: 301 MLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRGWLEPLGIRIV 360

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    R  A+  +A GQA +++GTHAL Q+++ ++ L L I+DEQHRFGV QRL 
Sbjct: 361 WLAGKVTGKARAAAMADVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHRFGVHQRLA 420

Query: 414 LTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L  K       PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+++   R  
Sbjct: 421 LRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTIVLSAERRP 480

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE--------------RFNSLHEHFT 515
           E++ER++V  +EG++AYW+C  IEE +E    +  +               F +L     
Sbjct: 481 ELVERIRVACAEGRQAYWVCTLIEESEEPEKGAHGQHSGPPRIEAQAAEVTFEALSAQLP 540

Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIENAE  GLA
Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGLA 600

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+ R  GE+L
Sbjct: 601 QLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLELRGPGELL 660

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           G +Q+G+  F IA       LL   +  A+ +L + PD+ 
Sbjct: 661 GTRQTGLASFRIADLARDAGLLPRVQVLAERLLAEAPDIA 700


>gi|153809138|ref|ZP_01961806.1| hypothetical protein BACCAC_03448 [Bacteroides caccae ATCC 43185]
 gi|149128471|gb|EDM19690.1| hypothetical protein BACCAC_03448 [Bacteroides caccae ATCC 43185]
          Length = 698

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 233/681 (34%), Positives = 367/681 (53%), Gaps = 21/681 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVT 71
           +    GVG + +  L+K +           DL++Y P  ++DR     I EI      + 
Sbjct: 9   IKFISGVGPQKAAVLNKEL-----GIYSLHDLIYYFPYKYVDRSRIYYIHEIDGNMPYIQ 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I    +    ++R      +DGTG + L++F +  + +   +    +  + GK   
Sbjct: 64  LKGEILGFETIGEGRQRRLTAHFSDGTGVVDLVWF-QGIKYILGKYKLHEEYIIFGKPTV 122

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA-LSRLPVL 185
              RI + HP     +   ++   ++  Y+         L+    +K++    L     L
Sbjct: 123 FNGRINLAHPDVDKTDDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATVILQIQEPL 182

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMR 244
           PE +   LL +     + EA   IH P      +    A+ RL ++EL   Q+ +L   +
Sbjct: 183 PETLSPKLLSEHHLMPLTEALRNIHFPTNP---DLLRRAQYRLKFEELFYVQLNILRYAK 239

Query: 245 KQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + ++  G      G +      +N+PF  T +Q+  +K+I  D+    +M R+LQGDVG
Sbjct: 240 DRQRRYRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMNRLLQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++TG++    
Sbjct: 300 SGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELLTGSIKGKR 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAPH 422
           R   L  +  G   I+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L  +    PH
Sbjct: 360 REAILTGLLTGDVKILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSKNIQPPH 419

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T  GD+D+S I E P GRKPI TV    NR + +   ++  + EG
Sbjct: 420 VLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATVHQFDNRRESLYRSVRKQIEEG 479

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGT 541
           ++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K+  M  F +G 
Sbjct: 480 RQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPECTVCKVHGKMKAAEKDEQMQLFISGK 539

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CIL+ +  L+
Sbjct: 540 AQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCILVTNYKLT 599

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIAR 660
           +++  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA       LL+  R
Sbjct: 600 EDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKIADIARDGQLLQYVR 659

Query: 661 KDAKHILTQDPDLTSVRGQSI 681
             A+ I+  DP   S   + +
Sbjct: 660 AIAEDIVEHDPGAQSPENEIL 680


>gi|53715245|ref|YP_101237.1| ATP-dependent DNA helicase RecG [Bacteroides fragilis YCH46]
 gi|52218110|dbj|BAD50703.1| ATP-dependent DNA helicase RecG [Bacteroides fragilis YCH46]
          Length = 698

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 234/689 (33%), Positives = 370/689 (53%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +           DLL+Y P  ++DR     I EI
Sbjct: 1   MFDLTTRDIKYLSGVGPQKAAVLNKELE-----IYSLHDLLYYFPYKYVDRSRIYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +F   ++R      +DGTG + L++F +  + + N +    + 
Sbjct: 56  DGNMPYIQLKGKILGFETFGEGRQRRLLAHFSDGTGVVDLVWF-QGIKYVTNKYKLHEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            V GK      RI + HP         ++   ++  Y+         L+    +K++   
Sbjct: 115 IVFGKPTVFNGRINVAHPDIDSPADLKLSSMGLQPYYNTTEKMKRSFLNSHAIEKMMATV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + ++   L E +   L+      S+ +A   IH P      E    A+ RL ++EL   Q
Sbjct: 175 IGQIQEPLSETLSPKLIADHHLMSLTDALRNIHFPSNP---ELLRKAQYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + +K  G      G+I      +N+PF  T +Q+  +++I QD+    +M 
Sbjct: 232 LNILRYAKDRQRKYRGYVFETVGEIFNTFYSKNLPFELTGAQKRVLREIRQDVGCGKQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHY+ I++      + VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLMALDNGFQACMMAPTEILANQHYDTIRELLFGMDVRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G  HI+IGTHA+ +D++ +  L L ++DEQHRFGV QR +L 
Sbjct: 352 TGSVKGKKREAILTGLLTGDVHILIGTHAVIEDTVNFASLGLAVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   
Sbjct: 412 SKSVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRRESLYRS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ 
Sbjct: 472 VRKQIEEGRQVYIVYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CI
Sbjct: 532 MQLFISGDAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+    L++ +  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTTYKLTEETRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ I   DP         +
Sbjct: 652 GQLLQYVRTIAEEITDADPGGVLPENAIL 680


>gi|168493601|ref|ZP_02717744.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           CDC3059-06]
 gi|183576417|gb|EDT96945.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           CDC3059-06]
          Length = 671

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 241/675 (35%), Positives = 381/675 (56%), Gaps = 30/675 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIGQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHI-----LTQDPDL 673
            +I       +DP+ 
Sbjct: 643 SYISSIEAWQEDPEW 657


>gi|313901534|ref|ZP_07834979.1| ATP-dependent DNA helicase RecG [Thermaerobacter subterraneus DSM
           13965]
 gi|313468195|gb|EFR63664.1| ATP-dependent DNA helicase RecG [Thermaerobacter subterraneus DSM
           13965]
          Length = 930

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/724 (33%), Positives = 380/724 (52%), Gaps = 48/724 (6%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            PL    GVG++ +  L+++            DLL++ P  + DR     I+ +    + 
Sbjct: 217 TPLGRLPGVGRRQAQRLARL------GLHTAGDLLWHLPRRYEDRSTWKPIARLVPGEVA 270

Query: 71  TITGYISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           T+ G +        + RR    + ++DG+G +  +FF +           GR + ++G++
Sbjct: 271 TVQGVVVAAQRVPTRTRRVVVRVTISDGSGRLDAVFFNQ--PFRLQQLPPGRPVRLSGRV 328

Query: 130 KKLKNRIIMVHPHYIFHN---SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-L 185
           +       M HP          + V+   I  VY    GL     +++  + +  L   +
Sbjct: 329 EAGYRGWQMDHPEVELLEGEGDEPVHTARIVPVYPATEGLHQRWLRQLAWQVVGALAGRV 388

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PE + ++L ++ +    A+A   IH P    D E    AR RLA++E    Q+AL  +R 
Sbjct: 389 PEILPEELRRQLNLVERAQALRDIHFPP---DAEAWQAARRRLAFEEWFVMQVALARVRS 445

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           Q ++E G     +G    + L  +PF  T +Q   + +I  DM     M R++QGDVGSG
Sbjct: 446 QQQQEPGRAHRPDGPRVARFLAALPFELTPAQRRVLDEIRADMEAPRPMRRLVQGDVGSG 505

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT++A  AM  AVE+G QA +MAP  ILA+QH   +++      I V ++ G+ P A R 
Sbjct: 506 KTVIAAWAMVKAVESGAQAALMAPTEILAEQHARRLQQLLAPAGIPVVLLVGSQPAADRE 565

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L+ +A GQ  +++GTHAL Q+++++  L LVI+DEQHRFGV+QR  L  K   P +L+
Sbjct: 566 RVLQGLATGQWPVVVGTHALIQENVRFRDLGLVIIDEQHRFGVRQRALLQDKGRRPDLLV 625

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL LT  GD+D+S I + P GR+P++TV +   +  +  + L   ++ G++ 
Sbjct: 626 MTATPIPRTLALTLYGDLDVSVIDQLPPGRQPVRTVWLRGRQRRKAYDLLAARVAAGEQG 685

Query: 486 YWICPQIEE-----------------------------KKESNFRSVVERFNSL-HEHFT 515
           Y +CP +++                              +++  ++V      +   +  
Sbjct: 686 YVVCPLVDDPAAGPAGDGPGSGGQAAGGEGPAPGPGGAPEDAEHKAVTTWAEYVARRYPR 745

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + I+HGRM   +KE VM +F+     +L+ATTVIEVG+DV +A+++IIE A+ FGLAQ
Sbjct: 746 LRVGILHGRMPGPEKERVMRAFERRALDVLVATTVIEVGVDVPNATVMIIEGADRFGLAQ 805

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG + S CIL+  P  S     RL  L  ++ GF IAE DL+ R  G+  G
Sbjct: 806 LHQLRGRVGRGSKESLCILVADPA-SAEGRMRLEALCRSQSGFDIAEFDLQLRGPGDFFG 864

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
            +Q G+P   IA P     LL +AR+ A+ +L +DP L +   +S+R  + + +Y E   
Sbjct: 865 TRQHGLPALRIADPVKDAGLLRLAREAARRLLERDPGLDAPAHRSLREEV-VARYGEFLA 923

Query: 696 FIRA 699
             RA
Sbjct: 924 EARA 927


>gi|218265097|ref|ZP_03478685.1| hypothetical protein PRABACTJOHN_04395 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221586|gb|EEC94236.1| hypothetical protein PRABACTJOHN_04395 [Parabacteroides johnsonii
           DSM 18315]
          Length = 698

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/686 (34%), Positives = 369/686 (53%), Gaps = 21/686 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IV 70
            +    GVG K +  L K      A  + + DLLFY P  +IDR    K++E++ +   +
Sbjct: 8   SIMYLPGVGPKKAEILQKE-----AGISSYEDLLFYFPYKYIDRSRFYKVAEVTGDMPYI 62

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G I    +    + R       DGTG I L++F +    + +    G    V GK  
Sbjct: 63  QLKGRILFFDTVGEGRTRRLIGKFTDGTGTIDLVWF-KGINYVMDKIKTGVDYIVFGKPT 121

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------ 184
           +  +   + HP     +  D     +   Y+    +         V+ L    +      
Sbjct: 122 EFGHIYNIPHPDIDTLDQADKVANGLTPFYNTSEKMKKSFLNSRAVQNLQYTLLSGLNWT 181

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE +   +L +       EA   +H P      +    A+ RL +DEL   Q+ +L   
Sbjct: 182 LPETLPPAVLNRIRMMPFPEAIRNVHFPES---VDKLRKAQLRLKFDELFFIQLNILRSS 238

Query: 245 KQFKKE-IGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
              K +  GI     G          +PF  T +Q+  +++I  DM    +M R+LQGDV
Sbjct: 239 NLRKLKLKGIVFPSVGDYFNTFYKEYLPFELTNAQKRVVREIRADMGSGRQMNRLLQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVAL++M  AV+   QA +MAP  ILA QHY  +  + ++  I V ++TG+  + 
Sbjct: 299 GSGKTLVALLSMLLAVDNHCQACMMAPTEILATQHYATVMGFLKDMDIKVALLTGSTKKK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAP 421
            R K L  IA G+  I+IGTHAL ++++ +  L L I+DEQHRFGV+QR +L  + +  P
Sbjct: 359 ERNKILPAIASGEIQIVIGTHALIEETVVFSSLGLAIIDEQHRFGVEQRSRLWTKNSIVP 418

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           HVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+TV    N+  ++ + L+  + +
Sbjct: 419 HVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTVHRYDNKKAQLYDFLRKEIGQ 478

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++ Y + P IE  ++ +++++ E F +  E F    + ++HG+M   DKE+ M  F +G
Sbjct: 479 GRQVYVVYPLIEGSEKLDYKNLEEGFETFKEVFPEYKVCMVHGKMKAADKEAEMQKFISG 538

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S C+L+    L
Sbjct: 539 EAQILMATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCVLVSSYKL 598

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLEIA 659
           S  +  RL ++ ++ +GF IAE DL+ R  G++ G +QSG      IA       +L+ A
Sbjct: 599 SNETRKRLEIMVSSNNGFEIAEADLRLRGHGDLEGTRQSGEGIDLKIANLAADGQILQYA 658

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685
           R  A+ +L +DPDL S   + +   L
Sbjct: 659 RDIAQEVLNEDPDLLSEPNRILNERL 684


>gi|167765297|ref|ZP_02437410.1| hypothetical protein BACSTE_03685 [Bacteroides stercoris ATCC
           43183]
 gi|167696925|gb|EDS13504.1| hypothetical protein BACSTE_03685 [Bacteroides stercoris ATCC
           43183]
          Length = 698

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 234/689 (33%), Positives = 376/689 (54%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +         F DLL+Y P  ++DR    +I EI
Sbjct: 1   MFDLTTRDIKYLSGVGPQRASVLNKEL-----GIFSFHDLLYYFPYKYVDRSRIYRIREI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +    ++R      +DGTG + L++F +  + L   +   ++ 
Sbjct: 56  DGAMPYIQLKGEILGFETAGEGRQRRLIAHFSDGTGIVDLIWF-QGIKYLIGKYKVHQEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            V GK      RI + HP     +   ++   ++  Y+         L+    +K++   
Sbjct: 115 IVFGKPTVFNGRINIAHPDIDPASELKLSAMGLQPYYNTTEKMKRSSLNSHAIEKMMKSL 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + +L   LPE +   LL +     + +A   IH P      +    A  RL ++EL   Q
Sbjct: 175 VGQLNEPLPETLSPALLAEHHLMPLTDALMNIHFPSGP---DVLRKAEYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + +K  G      G I      RN+PF  T +Q+  +K+I +D+    +M 
Sbjct: 232 LNILRYAKDRQRKYWGYVFEKVGDIFNGFYSRNLPFELTNAQKRVLKEIRRDLGAGRQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE I++      + VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLIALDNGYQACMMAPTEILANQHYETIRELLYGMDVRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G   I+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L 
Sbjct: 352 TGSIKGKRRETILSGLLTGDVQILIGTHAVIEDTVNFASLGLVVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    +    +   
Sbjct: 412 TKSVQPPHILVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDSHRVSLYRS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ 
Sbjct: 472 VRKQIDEGRQVYIVYPLIKESEKIDLKNLEEGYLHICEEFPDCRVCKVHGKMKPAEKDAQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CI
Sbjct: 532 MQLFVSGEAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+    L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTGYKLAEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R+ A+ I+ +DP+ +    + +
Sbjct: 652 GQLLQYVREVAQTIVDKDPNGSLPENEIL 680


>gi|29349332|ref|NP_812835.1| ATP-dependent DNA helicase RecG [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29341240|gb|AAO79029.1| ATP-dependent DNA helicase recG [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 698

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 233/689 (33%), Positives = 370/689 (53%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +           DL++Y P  ++DR     I EI
Sbjct: 1   MFDLTTRDIKFISGVGPQKAAVLNKELE-----IYSLYDLIYYFPYKYVDRSRIYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +    ++R      +DGTG + L++F +  + +   +    + 
Sbjct: 56  DGNMPYIQLKGEILGFETIGEGRQRRLTAHFSDGTGIVDLVWF-QGIKYILGKYKLHEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            + GK      RI + HP     +   ++   ++  Y+         L+    +K++   
Sbjct: 115 IIFGKPTVFNGRINVAHPDIDKPDDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + ++   LPE +   +L       + EA   IH P            + RL ++EL   Q
Sbjct: 175 IQQIQEPLPETLSPKILSDHHLMPLTEALRNIHFPTNPDSLRRA---QYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + ++  G      G +      +N+PF  T +Q+  +K+I  D+    +M 
Sbjct: 232 LNILCYAKDRQRRYRGYIFERVGDVFNTFYSQNLPFQLTGAQKRVLKEIRNDVGSGRQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLLALDNGFQACMMAPTEILANQHYETIKELLFGMDIRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G   I+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L 
Sbjct: 352 TGSIKGKKREAILTGLLTGDVKILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   
Sbjct: 412 TKNIQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRA 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P I+E ++ + +++ E +  + E F    +A +HG+M   +K+  
Sbjct: 472 VRKQIEEGRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPGCTVAKVHGKMKSAEKDEQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MQLFISGQAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+ +  L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIANLARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ I+  DP   S   + +
Sbjct: 652 GQLLQYVRSIAEDIVDNDPSAQSPENEIL 680


>gi|326576486|gb|EGE26394.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis CO72]
          Length = 698

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 251/675 (37%), Positives = 374/675 (55%), Gaps = 30/675 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++   GVG+  +  L+++         R  D+L + P  + DR     I ++S    V 
Sbjct: 11  PVTALSGVGQALAGRLAEL------GIHRIFDMLLHLPRDYEDRSRVIAIKDVSHGMSVL 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G ++       + R    + L D TGEITL FF+    +L  +   G KITV G+IK 
Sbjct: 65  VAGVVTWVE----KNRTGLSVTLEDATGEITLRFFHTYPSLLTTMM-VGAKITVFGEIKV 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWIE 190
            +    M HP Y    ++     L+  +Y    G++ +  ++++  AL+ +       + 
Sbjct: 120 SRYGTQMSHPDYHLTGTKKFESGLL-PIYPTIKGINQNKLRQLVRLALTAVQQDGIHGLS 178

Query: 191 KDLLQKKSFP---SIAEAFNIIHNPRKAKDF-----------EWTSPARERLAYDELLAG 236
           +  L+         +  A   +H P    D            + T PA  R+  +EL+A 
Sbjct: 179 ETQLKAAGVELTGDLLPALKAVHLPEIHADIFSQTALLAGLKDRTHPACRRIIIEELVAH 238

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q++ L  R    +      +    +A++++  +PF  T +Q+  I + + DM+    MLR
Sbjct: 239 QVSFLFRRNHIYQYKAPKCDPISPLAKQLVAGLPFELTAAQKRVIDEAVSDMATSRPMLR 298

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVG+GKTLVA +    A+++G Q  +MAP  ILA+QH    +K+ +   I V  + 
Sbjct: 299 LIQGDVGAGKTLVAAMTACYALDSGWQVAVMAPTEILAEQHLINFQKWFEPLGIGVGWLA 358

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G      R  AL+ I   Q  I++GTHALF D++ + KL LVI+DEQHRFGV+QRL+LT 
Sbjct: 359 GKQTAKERTAALDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQHRFGVEQRLRLTN 418

Query: 417 KAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           K     APH L MTATPIPRTL ++  GD+D+S I E P  R PI TV I  +R DEVIE
Sbjct: 419 KGVLGGAPHQLAMTATPIPRTLAMSMYGDMDVSIIDELPPKRTPITTVTINRDRRDEVIE 478

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           R++     GK+AYW+CP +EE    + +S    +  L +       +IHG+M   DK++V
Sbjct: 479 RIQNNCQAGKQAYWVCPLVEESSALDVQSAQLTYEDLSDRLDIRTGLIHGKMKAADKQAV 538

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +FK G   LLIATTVIEVG+DV +AS+++IENAE  GL+QLHQLRGRVGRG   S C+
Sbjct: 539 MQAFKAGDIDLLIATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRVGRGSAKSFCV 598

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLS     RL+VLK++ DGF+IA++DL+ R  GE+LG +Q+G   + +A     +
Sbjct: 599 LLYQLPLSPTGIERLNVLKDSTDGFVIAQKDLELRGAGELLGKRQTGDMGYYLADIVRDE 658

Query: 654 SLLEIARKDAKHILT 668
           +LLE A   A  ++ 
Sbjct: 659 ALLEAAGDIACQLIK 673


>gi|284929234|ref|YP_003421756.1| ATP-dependent DNA helicase RecG [cyanobacterium UCYN-A]
 gi|284809678|gb|ADB95375.1| ATP-dependent DNA helicase RecG [cyanobacterium UCYN-A]
          Length = 813

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 242/682 (35%), Positives = 380/682 (55%), Gaps = 29/682 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G +    L KI            DLLFY+P  +I+   +  IS I E   VTI
Sbjct: 127 LHALQGIGPRKIELLEKI------GLETIRDLLFYYPRDYINYARQVTISNIKEGETVTI 180

Query: 73  TGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVFFEGR 121
            G + + + F   K +   IL   + D TGEI L  F+              K  +    
Sbjct: 181 IGRVKRCNFFTSSKNKKLSILELVVQDHTGEIKLNRFFSGNRFTNKGWQEKQKRQYIRST 240

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
            I V+G +K+ +  + + +      +      +  N   I  VYSL  G+  +L +KII+
Sbjct: 241 VIAVSGLVKQNRYGLTLDNLEIEVLDDFNSSIESWNIGRILPVYSLTEGIDNNLIRKIII 300

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
             L     + + +   L  K     + +A   IH P      ++   AR RL +DE    
Sbjct: 301 SNLKSAKTILDPLPILLKSKYDLIDLKDALINIHFPTS---LDFLERARRRLIFDEFFYL 357

Query: 237 QIALLLMRKQFKKEIGI-PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+  L  R++ K    I        +  +  + +PF  TKSQ   I +I++D+     M 
Sbjct: 358 QLGFLKRRQERKVLKTINSFTPNRYLTHQFNKLLPFELTKSQRRVINEIIKDLDSLQSMN 417

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT+VA+ A+   +E+G Q  +MAP  +LA+QHY  I  Y     + VE++
Sbjct: 418 RLLQGDVGSGKTIVAIFAILTTLESGYQVALMAPTEVLAEQHYNKIVLYFNQLYLSVELL 477

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG+  ++ R +   ++  G+  +++GTHAL Q+ I++ KL LVI+DEQHRFGV+QR +L 
Sbjct: 478 TGSTKKSKRNEIYRQLLTGELPLLVGTHALIQEPIKFKKLGLVIIDEQHRFGVEQRTRLL 537

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K  +PHVL MTATPIPRTL LT  GD+DIS+I E P GRK I+T ++  N+  +  E +
Sbjct: 538 NKGKSPHVLSMTATPIPRTLALTLHGDLDISQIDELPPGRKAIETKVLIGNQKQKAYELI 597

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESV 533
              + +G++AY + P IEE ++ + ++ +E    L +      SI ++HGR++ ++K  V
Sbjct: 598 NQEVIQGRQAYIVFPMIEESEKLDIKAAIEEHKKLSKEIFPSFSIGLLHGRLNALEKNKV 657

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           ++ F++   +++++TTVIEVG+D+ +A++++IENAE FGL+QLHQLRGRVGR    S C 
Sbjct: 658 LNDFRDNKYQIMVSTTVIEVGVDIPNATVMLIENAERFGLSQLHQLRGRVGRSSFSSYCF 717

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+     + N+  +L+VL+ ++DGF I+E DLK R  G ILG +QSG+P F +A    + 
Sbjct: 718 LITSTK-TPNTLEKLNVLEQSQDGFFISEMDLKLRGPGTILGTRQSGLPDFALASLADNK 776

Query: 654 SLLEIARKDAKHILTQDPDLTS 675
            +LE+++  A+ I++ D  L S
Sbjct: 777 EILELSKLIAEKIISSDIKLNS 798


>gi|86133709|ref|ZP_01052291.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85820572|gb|EAQ41719.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 698

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 232/688 (33%), Positives = 368/688 (53%), Gaps = 23/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P++   G+  + +  L   +     N     DLL + P  +ID+     I E+    
Sbjct: 3   LEYPITYISGISVQRATLLYSELGIKTCN-----DLLNFFPFRYIDKTKFHAIKELQPNS 57

Query: 69  -IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V + G I    S   ++         D TG + L++F +  + +K+         V G
Sbjct: 58  SEVQVVGKIINVKSVAQKRGSRLVATFQDATGSMELVWF-KGQKWIKDSLKTDVPYVVYG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPT-----GLSVDLFKKIIVEALSR 181
           K+        + HP     +         ++ +Y         G+S  + +  I + L +
Sbjct: 117 KLNHYNGSFSIPHPEMELVSEYKKKLQTKMQPIYHSTEKLTNSGVSNKMIRSYIQKLLQQ 176

Query: 182 -LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
               + E +  +++         +A   +H P+  ++    + A+ RL ++EL   Q+ L
Sbjct: 177 FYDGIQESLSTEIINDFKLMKKRDALLNVHFPKSQENL---AKAQNRLKFEELFFIQLQL 233

Query: 241 LLMRKQFKKEIG-IPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +  +   K +I        G I  +     +PF+ T +Q+  +K+I +D++    M R+L
Sbjct: 234 VRKKLINKAKIKGFVFENVGAIFNQFYSEKLPFNLTNAQKRVLKEIRKDVASGAHMNRLL 293

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL+    A++ G QA IMAP  ILA QH+  + +  +   I V+I+TG+
Sbjct: 294 QGDVGSGKTIVALLTTLLAIDNGYQATIMAPTEILANQHFIAVSELVEGMNIKVDILTGS 353

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    RR+  E +  G+ HI+IGTHAL +D +++  L + I+DEQHRFGV+QR KL  K 
Sbjct: 354 VRTKKRREIHEGLEDGKLHILIGTHALLEDKVKFKNLGIAIIDEQHRFGVKQRAKLWAKN 413

Query: 419 T-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
           +  PH+L+MTATPIPRTL ++  GD+DIS I E P GRK IKTV    +    V + +K 
Sbjct: 414 SLPPHILVMTATPIPRTLAMSVYGDLDISVIDELPPGRKEIKTVHRFDSNRLSVFKFMKD 473

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVM 534
            +++GK+ Y + P I+E +  +++ +++ + S+   F S    I+I+HG+M   DK+  M
Sbjct: 474 EIAKGKQVYIVYPLIQESEAMDYKDLMDGYESVAREFPSPKYQISIVHGKMKPADKDYEM 533

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G  ++++ATTVIEVG++V +AS++IIE++E FGL+QLHQLRGRVGRG + S CIL
Sbjct: 534 QRFVKGETQIMVATTVIEVGVNVPNASVMIIESSERFGLSQLHQLRGRVGRGADQSYCIL 593

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           L    LS+   TRL  + +T DGF IAE DLK R  G ++G +QSG+    IA       
Sbjct: 594 LSSYKLSEEGKTRLKTMVDTTDGFKIAEVDLKLRGPGNLMGTQQSGVLNLKIADVAKDSK 653

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIR 682
           +L  AR  A  +L +DP+L       I+
Sbjct: 654 ILVAARNTAIDLLQEDPNLEKQHNLPIK 681


>gi|255658147|ref|ZP_05403556.1| ATP-dependent DNA helicase RecG [Mitsuokella multacida DSM 20544]
 gi|260849454|gb|EEX69461.1| ATP-dependent DNA helicase RecG [Mitsuokella multacida DSM 20544]
          Length = 687

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 256/700 (36%), Positives = 380/700 (54%), Gaps = 29/700 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +   +   +GVG K    L+++         R  D+L Y P ++ D+    +I+++    
Sbjct: 3   ITDSVQYLKGVGPKKKAELARL------GIARVYDVLTYFPRTYEDQSALTRIADLRPGT 56

Query: 69  IVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           + T+ G I        ++        LNDG+G + + +F +K   LKN    GR++ V+G
Sbjct: 57  VATVAGTIVNLQEQTGRRGLTILTAYLNDGSGLLQVTWFNQK--YLKNKLKVGRRVFVSG 114

Query: 128 KIKKLKNR------IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           K               + +   +    Q      I  VY+    L+   F+ ++ EAL  
Sbjct: 115 KPAYAYGGHGQFAMSQLRYFQILDEGEQAAGLCGILPVYAATERLNQKFFRTLVEEALEA 174

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              LPE I   +L ++      EA   +H P   KD E    AR RLA+ EL   Q  LL
Sbjct: 175 ADELPELIPARILAERKLMGRREALRAVHFP---KDGEELKRARYRLAFSELYLIQCGLL 231

Query: 242 LMRKQFKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L++KQ ++   GI     GK+   +L  +PF+ T  Q+ A ++I +DM +   M R++QG
Sbjct: 232 LIKKQSQQTRLGIRHQPNGKLVAAVLSGLPFTLTHDQQQAWQEICRDMERTVPMRRLVQG 291

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT++A++A+   VE G Q  +MAP  ILA QHYE +        I V  ++G++ 
Sbjct: 292 DVGSGKTVIAMLALVKTVETGWQGAMMAPTEILAAQHYENLSAKLAPLGIRVGYLSGHLT 351

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKAT 419
              RR+  E IA  +  I+IGTHAL QD + + +L LVI DEQHRFG+ QR  L  + A 
Sbjct: 352 PRERREMHEAIACHEVDIVIGTHALIQDDVHFARLGLVITDEQHRFGIAQRAALEKKGAH 411

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P VL+MTATPIPRT+ LT  GD+D+S I E P GR+PI+T +   +R   + + ++  +
Sbjct: 412 VPDVLVMTATPIPRTMTLTVYGDLDVSLIRELPPGRQPIRTFVRRPDRRPLIYQYVRSQI 471

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSF 537
             G++AY +CP IE  +ES+  S  E ++ L       I   ++HG+++  +KE VM  F
Sbjct: 472 EAGRQAYVVCPLIEMNEESDLPSAEEVYDELRFGIFRGIPCGLVHGKLAPAEKERVMQDF 531

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                KLL++TTVIEVG++V +ASI++IE+AE FGLAQLHQLRGR+GRG   S CIL+  
Sbjct: 532 YADKIKLLVSTTVIEVGVNVPNASIMVIEHAERFGLAQLHQLRGRIGRGSYASYCILVSE 591

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
              ++N+  RL ++    DGF +AEEDL+ R  G+  G  Q G+P   IA+     ++L 
Sbjct: 592 GK-TENARERLRIMATVSDGFKLAEEDLRLRGPGQFFGSMQHGLPDLKIARVPEDIAILL 650

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
            A + A+  LT   DL       IR +L L QY E FQ I
Sbjct: 651 EAHRAAEATLTSQGDLDF-----IRPILAL-QYKERFQHI 684


>gi|326571914|gb|EGE21919.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis BC8]
          Length = 698

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 249/675 (36%), Positives = 373/675 (55%), Gaps = 30/675 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++   GVG+  +  L+++         R  D+L + P  + DR     I ++S      
Sbjct: 11  PVTALSGVGQALAGRLAEL------GIHRIFDMLLHLPRDYEDRSRVIAIKDVSHGMSAL 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G ++       + R    + L D TGEITL FF+    +L  +   G KITV G+IK 
Sbjct: 65  VAGVVTWVE----KNRTGLSVTLEDATGEITLRFFHTYPSLLTTMM-VGAKITVFGEIKV 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWIE 190
            +    M HP Y    ++     L+  +Y    G++ +  ++++  AL+ +       + 
Sbjct: 120 SRYGTQMSHPDYHLTGTKKFESGLL-PIYPTIKGINQNKLRQLVRLALTAVQQDGIHGLS 178

Query: 191 KDLLQKKSFP---SIAEAFNIIHNPRKAKDF-----------EWTSPARERLAYDELLAG 236
           +  L+         +  A   +H P    D            + T PA  R+  +EL+A 
Sbjct: 179 ETQLKAAGVELTGDLLPALKAVHLPEIHADIFSQTALLAGLKDRTHPACRRIIIEELVAH 238

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q++ L  R    +      +    +A++++  +PF  T +Q+  I + + DM+    MLR
Sbjct: 239 QVSFLFRRNHIYQYKAPKCDPISPLAKQLVAGLPFELTAAQKRVIDEAVSDMATSRPMLR 298

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVG+GKTLVA +    A+++G Q  +MAP  ILA+QH    +K+ +   I V  + 
Sbjct: 299 LIQGDVGAGKTLVAAMTACYALDSGWQVAVMAPTEILAEQHLINFQKWFEPLGIGVGWLA 358

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G      R  AL+ I   Q  I++GTHALF D++ + KL LVI+DEQHRFGV+QRL+LT 
Sbjct: 359 GKQTAKERTAALDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQHRFGVEQRLRLTN 418

Query: 417 KATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           K  +   PH L MTATPIPRTL ++  GD+D+S I E P  R PI TV I  +R DEVIE
Sbjct: 419 KGVSGGAPHQLAMTATPIPRTLAMSMYGDMDVSIIDELPPKRTPITTVTINRDRRDEVIE 478

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           R++     GK+AYW+CP +EE    + +S    +  L +       +IHG+M   DK++V
Sbjct: 479 RIQNNCQAGKQAYWVCPLVEESSALDVQSAQLTYEDLSDRLDIRTGLIHGKMKAADKQAV 538

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +FK G   LLIATTVIEVG+DV +AS+++IENAE  GL+QLHQLRGRVGRG   S C+
Sbjct: 539 MQAFKAGDIDLLIATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRVGRGSAKSFCV 598

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLS     RL+VLK++ DGF+IA++DL+ R  GE+LG +Q+G   + +A     +
Sbjct: 599 LLYQLPLSPTGIERLNVLKDSTDGFVIAQKDLELRGAGELLGKRQTGDMGYYLADIVRDE 658

Query: 654 SLLEIARKDAKHILT 668
           +LLE A   A  ++ 
Sbjct: 659 ALLEAAGDIACQLIK 673


>gi|113954884|ref|YP_730486.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9311]
 gi|113882235|gb|ABI47193.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9311]
          Length = 857

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 242/706 (34%), Positives = 380/706 (53%), Gaps = 33/706 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PL+   G+G K +  L+ +            DL+ ++P  ++D     +I  +    
Sbjct: 158 LESPLARVHGIGPKLAERLASL------GLLVVRDLIQHYPRDYVDYSALRRIEALEAGE 211

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFF-----YRKTEMLK---NVF 117
             TI   + +   F   +     I+   L D TG I +  F     +     L      +
Sbjct: 212 TATIVATVRRSHGFTSPRNPNLSIIELQLQDPTGRIKVTRFLAGKRFSNPSYLHGQTRQY 271

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-----NFPLIEAVYSLPTGLSVDLFK 172
             G  + V+G +K     +    P      S +          +  VY L  GL+ D F+
Sbjct: 272 PVGATVAVSGLVKSGPYGVSFQDPLIEVMESANAPLRSRQIGRLLPVYPLTEGLTADRFR 331

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            ++   L  +   PE +     + +   +  +A   IH P  +   E    AR RL +DE
Sbjct: 332 SLVEAVLPAVRFWPEPLPASRREARGLMARDQALVAIHRPETS---EQLQQARHRLVFDE 388

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKI---AQKILRNIPFSPTKSQESAIKDILQDMS 289
            L  Q++L+  R   ++     ++   +      + L  +PF  T +Q+    +I QD+ 
Sbjct: 389 FLLLQLSLMQRRAALRQRSAPVLHGVVEREGLVGRFLSLLPFELTGAQKRVFSEIEQDLE 448

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           +   M R++QGDVGSGKT+VA+ A+  AVEAG Q  +MAP  +LA QHY  +  +     
Sbjct: 449 RPEPMARLVQGDVGSGKTVVAIAALLRAVEAGWQGALMAPTEVLAAQHYRSLCCWLPPLH 508

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + VE++TG+ P+  RR+ L  ++ G   I++GTHAL +D + + +L LV+VDEQHRFGV+
Sbjct: 509 VSVELLTGSTPRRSRRQILSDLSGGTLRILVGTHALLEDPVAFDRLGLVVVDEQHRFGVR 568

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI+T ++  +  +
Sbjct: 569 QRNRLLDKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIRTRVVKSSERE 628

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSD 527
           E  E ++  +S+G++ Y + P +EE ++ + RS V+    L E      S+ ++HGR++ 
Sbjct: 629 EAYELIREQVSQGQRTYVVLPLVEESEKVDLRSAVDVHRQLSEEVFPEFSVGLLHGRLAS 688

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K++V+  F  GT ++L++TTV+EVG+DV +AS+++I++A+ FGLAQLHQLRGRVGRG 
Sbjct: 689 AEKQAVIADFAAGTTQILVSTTVVEVGVDVPEASVMVIDHADRFGLAQLHQLRGRVGRGA 748

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C LL +   +  +  RL VL  + DGF IAE DL+ R  G++LG +QSG+P   +A
Sbjct: 749 AASYC-LLVNDSRNPLARQRLEVLVRSNDGFEIAEMDLRFRGPGQVLGTRQSGLPDLALA 807

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
                 S+LE AR +A  IL +DPDL S     IR+LL   +   A
Sbjct: 808 SLADDGSVLEEARDEAASILKEDPDLKSFEH--IRVLLEQQRKRAA 851


>gi|257454372|ref|ZP_05619635.1| ATP-dependent DNA helicase RecG [Enhydrobacter aerosaccus SK60]
 gi|257448275|gb|EEV23255.1| ATP-dependent DNA helicase RecG [Enhydrobacter aerosaccus SK60]
          Length = 717

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 256/736 (34%), Positives = 401/736 (54%), Gaps = 58/736 (7%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           ++P   N    P++   GVG K +  L ++         R  DLL + P  + DR     
Sbjct: 3   LKPDIFNL---PVTALAGVGSKIAEQLDQL------GIERVFDLLLHLPRDYEDRSRLVN 53

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           + ++ + +   + G + +  +    K+    + L D T + TL FF +    L +    G
Sbjct: 54  MCDVVDGQSALLQGTVVRVDN----KKMGLSVTLQDRTAQTTLRFF-KVYRGLTDTMAVG 108

Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             + V G+I   K    + HP Y I    Q +    +  VY     L  +  + +I  AL
Sbjct: 109 NTLRVFGEISISKYGTQISHPEYEIITGHQPLTNTGLIPVYPTVKNLHQNKLRSLIRLAL 168

Query: 180 SRLPV---------LPEW--IEKDLLQKKSFP----------SIAEAFNIIHNPRKAKDF 218
             +             +W  ++  L Q+              S+ EA + IH P    D 
Sbjct: 169 QTVKQANPVMATISDADWQIVQSALSQQFPLLAGSHNPFGEFSLLEAISFIHQPPIYTDL 228

Query: 219 E-----------WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
                        + P  +RL  +E+LA Q++LL  ++Q  +      +    +A ++L 
Sbjct: 229 NKQILVLEALKNRSHPTCQRLIIEEMLAHQLSLLYRKQQLYQHKAPRCDATSALANRLLA 288

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           N+PF+PT +Q   + +I++D+S    MLR++QGDVG+GKTLVA +A   A+++G Q  +M
Sbjct: 289 NLPFTPTHAQNRVVAEIVKDLSTSVPMLRLVQGDVGAGKTLVAALAACYALDSGWQVAVM 348

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  ILA+QH    K + +   I V  + G      R KAL+++   +  I++GTHALFQ
Sbjct: 349 APTEILAEQHLNNFKNWFEPLGIGVGWLAGKQTAKAREKALQQVQDNEVQIVVGTHALFQ 408

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQK---ATAPHVLLMTATPIPRTLVLTSLGDID 444
           + + + KL LVI+DEQHRFGV+QR+ L  K    T PH L+MTATPIPRTL +++ GD+D
Sbjct: 409 EHVNFAKLGLVIIDEQHRFGVEQRMALVDKGLAHTTPHQLIMTATPIPRTLAMSAFGDMD 468

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            S I E P  R PI TV I  +R DEVIER+ V   +GK+AYW+CP +EE    + ++  
Sbjct: 469 TSIIDELPPNRTPITTVTISRDRRDEVIERIAVNCEQGKQAYWVCPLVEESTMLDAQAAE 528

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
             +  L++    +I ++HG+M   DK++VM  FK G   LL+ATTVIEVG+DV +AS+++
Sbjct: 529 ATYADLNDRLNLNIGLVHGKMKPNDKQAVMADFKAGKTALLVATTVIEVGVDVPNASLMV 588

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           IENAE  GL+QLHQLRGRVGRG + S C+LLY  PLS+    RL+VL+++ DGF+IA++D
Sbjct: 589 IENAERLGLSQLHQLRGRVGRGTQKSFCVLLYQTPLSETGIERLNVLRDSNDGFVIAQKD 648

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           L+ R  GE+LG +Q+G   + ++     +SLL +A+  AK+++  +        +  ++ 
Sbjct: 649 LELRGAGELLGKRQTGFDSYYVSDLARDESLLIVAQAIAKYLIADE-------NRKSQVQ 701

Query: 685 LYLYQYN-EAFQFIRA 699
            Y+  +  +A ++I A
Sbjct: 702 QYISHWTPDAIKYINA 717


>gi|210615605|ref|ZP_03290678.1| hypothetical protein CLONEX_02896 [Clostridium nexile DSM 1787]
 gi|210150209|gb|EEA81218.1| hypothetical protein CLONEX_02896 [Clostridium nexile DSM 1787]
          Length = 705

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 244/687 (35%), Positives = 390/687 (56%), Gaps = 22/687 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
            + +S+ +G+G+K      K+      N     DLL + P  +        I+EI E R 
Sbjct: 23  QSTISSLKGIGEKTEKLFQKL------NIFTIGDLLRHFPKGYEVYEEATPIAEIDEGRT 76

Query: 70  VTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           VT+TG I      Q+  R   ++    + D TG + +++F  +   L+N F +G  +T+ 
Sbjct: 77  VTVTGAIYGK--VQVSGRTSMQVTTIYVKDITGTLRVVWF--RMPFLRNTFQKGGVVTLR 132

Query: 127 GKIKKLKNRIIMVHPHYIFHNS-QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           GK+ + K  ++M  P   + +   +     ++  Y+L  GL+ +   K + +A+S L + 
Sbjct: 133 GKVVRRKGTLLMEQPEIFYPSELYEEKINTLQPNYALTAGLTNNAVVKAMKQAISYLDLK 192

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            +++  D+  +        A   IH P    D E    ARERL ++E L   +AL  M++
Sbjct: 193 QDFLPPDVRTRYHLAEYNYAIQGIHFP---VDKEEFYTARERLVFEEFLVFILALRQMKE 249

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + +K          +  ++ +  +P+  T +Q+   ++I  D++  + M R++QGDVGSG
Sbjct: 250 KNEKSKNTFSFAIAEPVEQFMHKLPYELTGAQQKVWEEIKADLNGAHVMSRLVQGDVGSG 309

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI--ITGNMPQAH 363
           KT++AL+ +  A   G Q  +MAP  +LA+QH+E I +  +  QI V +  +TG+M    
Sbjct: 310 KTIIALLGLLLAAVNGYQGALMAPTEVLAKQHFESICEMLEEHQIPVCVEFLTGSMTAKE 369

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R A ERIA G+A II+GTHAL Q+ ++Y+ L LV+ DEQHRFGV+QR KL +K   PH+
Sbjct: 370 KRMAYERIASGEAQIIVGTHALIQEKVKYHSLALVVTDEQHRFGVKQREKLAEKGNTPHI 429

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++  N      + +K  + EG+
Sbjct: 430 LVMSATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVDTNYRKTAYQFMKKQVLEGR 489

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
           + Y ICP IEE +     +V++   +L E    +  +A +HG+M   +K+ +M+ F    
Sbjct: 490 QCYVICPMIEENENLEAENVIDYAKTLQEEMGDNIQVAYLHGKMKQSEKDVIMEQFGKRE 549

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVGI+V +A+++++ENAE FGLAQLHQLRGRVGRG+  S CI +     S
Sbjct: 550 IQILVSTTVIEVGINVPNATVMMVENAERFGLAQLHQLRGRVGRGKYQSYCIFMSASK-S 608

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           K +  RLS+L  + DGF IA EDLK R  G++ GI+QSG+  F +        +L+ A +
Sbjct: 609 KETKERLSILNKSNDGFFIASEDLKLRGPGDLFGIRQSGILDFKLGDVFQDAKILQRASE 668

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLY 688
            A+ ++++D +L     Q+IR  L  Y
Sbjct: 669 AAEQLISEDENLEKQNHQNIREYLQKY 695


>gi|289167442|ref|YP_003445711.1| branch migration of Holliday junctions, junction-specific DNA
           helicase,ATP-dependent DNA helicase, recG homolog
           [Streptococcus mitis B6]
 gi|288907009|emb|CBJ21843.1| branch migration of Holliday junctions, junction-specific DNA
           helicase,ATP-dependent DNA helicase, recG homolog
           [Streptococcus mitis B6]
          Length = 671

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 239/687 (34%), Positives = 385/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     KII  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKIIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E I + LL K    S  +A   +H P   KD      A  R+ +++L   Q+ L  ++ +
Sbjct: 169 ENIPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEKLFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ ++   +    +  ++PF+ T +QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLDWSQEKVTAVKESLPFALTPAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QAV+M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAVLMVPTEILAEQHFESLQSLF--PDLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL +D ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLESIAKGEADLIIGTHALIKDGVEYARLGLIIIDEQHRFGVGQRRVLREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G ++
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQS 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEAWQEDPEWRMIALHLEKKEH 669


>gi|163941593|ref|YP_001646477.1| ATP-dependent DNA helicase RecG [Bacillus weihenstephanensis KBAB4]
 gi|163863790|gb|ABY44849.1| ATP-dependent DNA helicase RecG [Bacillus weihenstephanensis KBAB4]
          Length = 685

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 231/693 (33%), Positives = 376/693 (54%), Gaps = 26/693 (3%)

Query: 1   MRPSFLNPL-FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP 59
           MR   LN +   P++  +G+G + S  L ++             LL + P  + D     
Sbjct: 1   MR--ILNEVVQVPVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMK 51

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVF 117
            ++E+  +  VT+ G +      Q   ++  ++ +    G   IT + F R     K   
Sbjct: 52  DLAEVKHDERVTVEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKL 109

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
                +T+TGK  + +  I +       +    V    +E VYS+   L+V   ++ + +
Sbjct: 110 NLDETVTITGKWDQHRQTIAVS----ELNFGPVVRQQEVEPVYSVKGKLTVKQMRRFVAQ 165

Query: 178 ALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           A       + E +   LL +    S  EA   +H P   +D      AR R  Y+E    
Sbjct: 166 AFKEYGDSIVEVLPDGLLSRYKLLSRYEALRGLHFPVGQEDL---KQARRRFVYEEFFLF 222

Query: 237 QIALL-LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ +  L + + +   G    +     Q+    +PF  T +Q   + +I++DM    RM 
Sbjct: 223 QLKMQTLRKMERENSKGTKKEISLVELQEFTDALPFPLTGAQRRVVDEIMKDMISPYRMN 282

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT+VA IA+ AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++
Sbjct: 283 RLLQGDVGSGKTVVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELL 342

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           T ++  A RR+ L R+  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L 
Sbjct: 343 TSSVKGARRREILSRLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLR 402

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K  +P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  +
Sbjct: 403 EKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFV 462

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESV 533
           +  + +G++AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +
Sbjct: 463 EKEMKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEI 522

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F     ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+
Sbjct: 523 MGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCL 582

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+  P  S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A      
Sbjct: 583 LIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDY 641

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             LE AR+DA  ++  +    + +  S+R  L 
Sbjct: 642 RALETARQDAAILVDSEAFWHNDQYASLRTYLD 674


>gi|260062801|ref|YP_003195881.1| ATP-dependent DNA helicase RecG [Robiginitalea biformata HTCC2501]
 gi|88784369|gb|EAR15539.1| ATP-dependent DNA helicase RecG [Robiginitalea biformata HTCC2501]
          Length = 701

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 239/713 (33%), Positives = 383/713 (53%), Gaps = 27/713 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+P   +P   PL+  +GVG   +  L   +         F DLL++ P+ +ID+    K
Sbjct: 1   MQP---DPRNTPLAYLKGVGPGRARLLESEL-----GLKTFRDLLYFFPNRYIDKSRYYK 52

Query: 61  ISEI-SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I E+      V + G I    + + ++ +       D TGE+ L++F R  +  +     
Sbjct: 53  IRELERSSAEVQLIGKIVHLKTVEQKRGKRLVATFRDDTGEMELVWF-RSQKWFRERLKL 111

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPT-----GLSVDLFKK 173
           G    + G++        M HP     ++      + ++ VY         G+S  L  +
Sbjct: 112 GEPYVIFGRVNWYNGAFSMPHPDLELLSAHQQQKRIRMQPVYPSTEKLTRQGISNRLLTQ 171

Query: 174 IIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            +   L+++  VLPE +   +L+         +   IH P         + A+ RL ++E
Sbjct: 172 WVAAVLAQVREVLPETLPDRILEALQLLPKPRSLVQIHFPDSNALL---ARAQARLKFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIG-IPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQ 290
           L   Q+ALL  + + KK I        G+      + ++PF  T +Q+  I++I  D+  
Sbjct: 229 LFYIQLALLSKKHERKKRIRGYLFEQVGERFTAFYKDHLPFDLTGAQKRVIREIRADLGS 288

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
             +M R+LQGDVGSGKT+VA++ +  A++ G QA ++AP  ILAQQH+  + +  +   +
Sbjct: 289 NAQMNRLLQGDVGSGKTIVAVLTILLALDNGYQACLVAPTEILAQQHFNAVSELLEPLGL 348

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V ++TG++ +  R+  L  ++ G   I+IGTHA+ +  +++  L L I+DEQHRFGV Q
Sbjct: 349 PVGLLTGSVKEKDRKPLLAGLSDGSLPILIGTHAVLEPRVKFNNLGLAIIDEQHRFGVAQ 408

Query: 411 RLKL-TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           R KL  +    PH+L+MTATPIPRTL ++  GD+DIS I E P GRKP++TV+       
Sbjct: 409 RAKLWKKNKRPPHILVMTATPIPRTLAMSLYGDLDISLIDELPPGRKPVRTVLRGDRDRL 468

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMS 526
            V   LK  + +G++AY + P I+E +  +++ +++ F S+   F      ++I+HG+M 
Sbjct: 469 RVFGFLKDEIRKGRQAYIVYPLIQESEAMDYKDLMDGFESISREFPQPDFQVSIVHGQMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              KE  M  F  G  ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG
Sbjct: 529 PEAKEYEMQRFAEGKTQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            + S CIL+    LS+ + TRL  +  T DGF IAE DLK R  G +LG +QSG+    I
Sbjct: 589 ADQSYCILMCGEKLSEEARTRLQTMARTNDGFEIAETDLKLRGPGNLLGTQQSGVLSLRI 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ-YNEAFQFIR 698
           A       LL+ AR+ A+ +L  DP L     + +R  L   + +   + +I 
Sbjct: 649 ADLVRDRELLQSAREFARQLLLADPGLEQAENRVVRTRLQQMEVFQNRWDYIS 701


>gi|326563268|gb|EGE13535.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 46P47B1]
 gi|326569240|gb|EGE19301.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis BC7]
          Length = 698

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 248/675 (36%), Positives = 372/675 (55%), Gaps = 30/675 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++   GVG+  +  L+++         R  D+L + P  + DR     I ++       
Sbjct: 11  PVTALSGVGQALAGRLAEL------GIHRIFDMLLHLPRDYEDRSRVIAIKDVHHGMSAL 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G ++       + R    + L D TGEITL FF+    +L  +   G KITV G+IK 
Sbjct: 65  VAGVVTWVE----KNRTGLSVTLEDATGEITLRFFHTYPSLLTTMM-VGAKITVFGEIKV 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWIE 190
            +    M HP Y    ++     L+  +Y    G++ +  ++++  AL+ +       + 
Sbjct: 120 SRYGTQMSHPDYHLTGTKKFESGLL-PIYPTIKGINQNKLRQLVRLALTAVQQDGIHGLS 178

Query: 191 KDLLQKKSFP---SIAEAFNIIHNPRKAKDF-----------EWTSPARERLAYDELLAG 236
           +  L+         +  A   +H P    D            + T PA  R+  +EL+A 
Sbjct: 179 ETQLKAAGVELTGDLLPALKAVHLPEIHADIFSQTALLAGLKDRTHPACRRIIIEELVAH 238

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q++ L  R    +      +    +A++++  +PF  T +Q+  I + + DM+    MLR
Sbjct: 239 QVSFLFRRNHIYQYKAPKCDPISPLAKQLVAGLPFELTAAQKRVIDEAVSDMATSRPMLR 298

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVG+GKTLVA +    A+++G Q  +MAP  ILA+QH    +K+ +   I V  + 
Sbjct: 299 LIQGDVGAGKTLVAAMTACYALDSGWQVAVMAPTEILAEQHLINFQKWFEPLGIGVGWLA 358

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G      R  AL+ I   Q  I++GTHALF D++ + KL LVI+DEQHRFGV+QRL+LT 
Sbjct: 359 GKQTAKERTAALDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQHRFGVEQRLRLTN 418

Query: 417 KATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           K  +   PH L MTATPIPRTL ++  GD+D+S I E P  R PI TV I  +R DEVIE
Sbjct: 419 KGVSGGAPHQLAMTATPIPRTLAMSMYGDMDVSIIDELPPKRTPITTVTINRDRRDEVIE 478

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           R++     GK+AYW+CP +EE    + +S    +  L +       +IHG+M   DK++V
Sbjct: 479 RIQNNCQAGKQAYWVCPLVEESSALDVQSAQLTYEDLSDRLDIRTGLIHGKMKAADKQAV 538

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +FK G   LLIATTVIEVG+DV +AS+++IENAE  GL+QLHQLRGRVGRG   S C+
Sbjct: 539 MQAFKAGDIDLLIATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRVGRGSAKSFCV 598

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLS     RL+VLK++ DGF+IA++DL+ R  GE+LG +Q+G   + +A     +
Sbjct: 599 LLYQLPLSPTGIERLNVLKDSTDGFVIAQKDLELRGAGELLGKRQTGDMGYYLADIVRDE 658

Query: 654 SLLEIARKDAKHILT 668
           +LLE A   A  ++ 
Sbjct: 659 ALLEAAGDIACQLIK 673


>gi|332828323|gb|EGK01032.1| ATP-dependent DNA helicase RecG [Dysgonomonas gadei ATCC BAA-286]
          Length = 707

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 230/688 (33%), Positives = 369/688 (53%), Gaps = 21/688 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER- 68
              +    GVG K +  L+K +     N     DLL+Y P  +IDR     I EI     
Sbjct: 15  QTDIKFLAGVGPKKAEILNKEL-----NVFSVEDLLYYFPYKYIDRSRIYFIHEIDGNMP 69

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            + + G I+   +   + ++       DGTG I L++F +    ++  +       V GK
Sbjct: 70  YIQLRGRITGFETHGERHKKRLVGHFTDGTGYIDLVWF-QGARFIEEKYKLNLPYIVFGK 128

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEALSRL- 182
                ++  + HP    + +++     +   Y+         L+    +K++  A + + 
Sbjct: 129 PTMFGDKFNIAHPDIDPYINEEERPTGLMPYYNTTEKMKNHYLNSKAIQKMMAAAFTSII 188

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             L E + + ++Q      + +A   +H P  A         + RL ++EL   Q+ +L 
Sbjct: 189 RNLQETLPEKVIQNARLMDLKQAMRNVHFPENATLLREA---QYRLKFEELFYIQLNILR 245

Query: 243 MRKQFKKE-IGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
                K +  G      G          +PF  T +Q+  IK+I QDM+   +M R+LQG
Sbjct: 246 YTADRKSKLKGFVFTKVGGYLNTFYEQNLPFPLTNAQKRIIKEIRQDMATGEQMNRLLQG 305

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVAL+ M  A++ G QA +MAP  ILA QHY  IK++     + VE++TG+  
Sbjct: 306 DVGSGKTLVALMLMLIALDNGFQAALMAPTEILATQHYYTIKEFLAGMDVNVELLTGSTK 365

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKAT 419
           +  R +    +      I+IGTHAL +D++Q+  L LV++DEQHRFGV QR KL  +   
Sbjct: 366 KKDRERIHSGLLTNDVQILIGTHALIEDTVQFGNLGLVVIDEQHRFGVAQRAKLWTKNTN 425

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+     +   +   ++  L
Sbjct: 426 PPHILVMTATPIPRTLAMTVYGDLDVSVIDELPPGRKPIQTIHQYDKKRGALYNSIRKQL 485

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            EG++ Y + P IEE ++ + +++ E F  + E F   ++  +HG+M   +K++ M  F 
Sbjct: 486 QEGRQVYMVYPLIEESEKLDLKNLEEGFEHIKEIFPEYTVCKVHGKMKPKEKDAEMQRFV 545

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               ++++ATTVIEVG++V +AS+++IE+A+ FGL+QLHQLRGRVGRG + S CIL+   
Sbjct: 546 TNEAQIMVATTVIEVGVNVPNASVMVIESAQRFGLSQLHQLRGRVGRGADQSYCILVTPY 605

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLE 657
            LS ++  R++++  + DGF IAE DLK R  G++ G +QSG+P    IA       +++
Sbjct: 606 ELSADTRKRINIMVESNDGFEIAEADLKLRGPGDLEGTQQSGIPFNLRIANLVRDGEIVQ 665

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILL 685
            AR+ A+++L +DP +       +R  L
Sbjct: 666 YAREIAQNVLDEDPLMEKPDNLILRKQL 693


>gi|237649235|ref|ZP_04523487.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CCRI
           1974]
 gi|237821995|ref|ZP_04597840.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 671

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/687 (34%), Positives = 385/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +  +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKASQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEAWQEDPEWRMIALHLEKKEH 669


>gi|313204849|ref|YP_004043506.1| ATP-dependent DNA helicase recg [Paludibacter propionicigenes WB4]
 gi|312444165|gb|ADQ80521.1| ATP-dependent DNA helicase RecG [Paludibacter propionicigenes WB4]
          Length = 698

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 232/694 (33%), Positives = 377/694 (54%), Gaps = 22/694 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI- 69
             +    GVG K +  L+K +           DLL ++P  ++DR     + EISE+   
Sbjct: 6   QDIKFLPGVGPKKADLLNKEL-----GIRSAEDLLRHYPYKYVDRSRFYYLHEISEDMPF 60

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + + G I +         +    +  DG   I L++F +  + + + +  G +  V GK 
Sbjct: 61  IQVKGQIIRFEKVGEGPTQRLTAIFTDGRETIELVWF-KGVKYVIDKYKTGVQYVVFGKP 119

Query: 130 KKLKNRIIMVHPHYIFHNS-QDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEALSRL- 182
                R  +VHP     +         ++  Y+         L+  + +KII   +  + 
Sbjct: 120 SPFNGRFNIVHPEIELVSQLPPPEQMGLQPFYNTSEKMKNSFLNSKMLQKIIFPVIQSIK 179

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
           P +P+ +   LLQK +  ++ E+   +H P+ A      + AR+RL ++EL   Q+ +L 
Sbjct: 180 PGIPDTLPAYLLQKFALMNLTESLVNVHFPKNANAL---NKARQRLKFEELFYIQLNILQ 236

Query: 243 M-RKQFKKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             + + +   G      G          +PF  T +Q+  +++I  D++   +M R+LQG
Sbjct: 237 QTKWRDQHFKGFVFGQIGHYFNTFFKDFLPFELTGAQKRVLREIRIDVASGRQMNRLLQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVAL+AM  AV+ G QA IMAP  ILA QH+  + ++  +  + V ++TG+  
Sbjct: 297 DVGSGKTLVALMAMLMAVDNGFQACIMAPTEILATQHFASLTEFLGDMGVSVALLTGSTR 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKAT 419
              R +  E++  G+ +I+IGTHAL +D++Q+  L LV++DEQHRFGV+QR +L  +   
Sbjct: 357 PKARVELHEKLRSGELNILIGTHALIEDTVQFSNLGLVVIDEQHRFGVEQRARLWRKNVQ 416

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH+L+MTATPIPRTL +T  GD+ +S I E P GRKPI+T     N+   + + +   +
Sbjct: 417 PPHILVMTATPIPRTLAMTLYGDLSVSVIDELPPGRKPIQTYHYYENKRQGLNQFIAKQV 476

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFK 538
             G++ Y + P I+E ++ + +++   +  + E F   +I+ +HG++   +K+  M  F 
Sbjct: 477 EAGRQIYIVYPLIQESEKIDLQNLETGYEYMREVFPTYTISKVHGKLKPAEKDHEMQKFV 536

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++++ATTVIEVG++V +AS+++IE+A+ FGL+QLHQLRGRVGRG E S CILL   
Sbjct: 537 TGQTQIMVATTVIEVGVNVPNASVMVIESAQRFGLSQLHQLRGRVGRGAEQSFCILLTDY 596

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLE 657
            L+ ++  R+ ++  T DGF I+E DLK R  G++ G +QSG+P    IA       +LE
Sbjct: 597 KLASDTRKRMEIMVRTNDGFEISEADLKLRGPGDLEGTQQSGLPFDLKIANLAQDGKMLE 656

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           IAR  A  IL  DP L     + +   L   + N
Sbjct: 657 IARNAAMEILEDDPQLIKTENRVLATQLRKMKTN 690


>gi|307707070|ref|ZP_07643867.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK321]
 gi|307617596|gb|EFN96766.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK321]
          Length = 671

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 241/687 (35%), Positives = 381/687 (55%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +    K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYVKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  N+PF+ T +QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKENLPFALTPAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQSLF--PDLKLALLTGSLKTAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQDFKEKKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEGWQEDPEWRMIALHLEKKEH 669


>gi|295086530|emb|CBK68053.1| ATP-dependent DNA helicase RecG [Bacteroides xylanisolvens XB1A]
          Length = 698

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 235/689 (34%), Positives = 370/689 (53%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +           DL++Y P  +IDR     I EI
Sbjct: 1   MFDLATRDIKFISGVGPQKAAVLNKELE-----IYSLHDLIYYFPYKYIDRSRIYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +    ++R      +DGTG + L++F +  + +   +    + 
Sbjct: 56  DGNMPYIQLKGEILGFETIGEGRQRRLTAHFSDGTGVVDLVWF-QGIKYILGKYKLHEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            + GK      RI + HP         ++   ++  Y+         L+    +K++   
Sbjct: 115 IIFGKPTVFNGRINVAHPDVDKPEDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + ++   LPE +   LL +     + EA   IH P      +    A+ RL ++EL   Q
Sbjct: 175 IQQIQEPLPETLSSKLLAEYHLMPLTEALRNIHFPTNP---DVLRRAQYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + K+  G      G +      +N+PF  T +Q+  +K+I  D+    +M 
Sbjct: 232 LNILRYAKDRQKRYRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G   I+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L 
Sbjct: 352 TGSIKGKRREAILTGLLTGDVKILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   
Sbjct: 412 SKNVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESV 533
           +   + EG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K+  
Sbjct: 472 VHKQIEEGRQVYIVYPLIKESEKIDLKNLEEGYQHVLEEFPKCTVCKVHGKMKPAEKDEQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MQLFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+ +  L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ I+ QDP   +   + +
Sbjct: 652 GQLLQYVRAIAESIVEQDPAAQNPENEIL 680


>gi|294793852|ref|ZP_06758989.1| ATP-dependent DNA helicase RecG [Veillonella sp. 3_1_44]
 gi|294455422|gb|EFG23794.1| ATP-dependent DNA helicase RecG [Veillonella sp. 3_1_44]
          Length = 680

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 233/653 (35%), Positives = 369/653 (56%), Gaps = 15/653 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+T +G+G      L K+        T    LL Y P ++ DR     I ++       +
Sbjct: 5   LTTIKGIGPGREKQLHKL------GITNVTSLLTYFPRTYEDRRTIYSIGDLKSGMTGGV 58

Query: 73  TGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +      + + R    ++++ DGTG + ++ F +     KN + +G++I   GK + 
Sbjct: 59  VGTVIAVQEKRPRPRLSILEVVIADGTGPLKIVLFNQG--YKKNFYKKGQRIYAYGKAEF 116

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
               + M  P              I  +Y+L  G+S  + +  +    +    LPE +  
Sbjct: 117 QYGYMQMNTPQMENLGDGGEPDRGIVPIYALADGVSQFVVRSTVRNWFAANHELPEILPV 176

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           ++ +   + S  +AF ++H P  ++ +E    AR +LAY+EL   Q  L L+R + +   
Sbjct: 177 EVREDHHYMSRYDAFKMMHFPDSSELYE---KARYQLAYEELFVMQAGLALLRNKEQCHR 233

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G  +   G++  + + N+PFS T  Q+ A++DI  DM  +  M R+LQGDVGSGKT+VA 
Sbjct: 234 GSKMGPNGELMAQCIENLPFSLTGDQQRALEDIRIDMEDERPMQRLLQGDVGSGKTIVAT 293

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +++  A+E G Q  +MAP  ILA QHYE I+    N  I +E++TG+  +  +    E +
Sbjct: 294 LSLLKAIENGYQGALMAPTEILAAQHYEGIRTVCANLGITIELLTGSSTKKEKECIYEGL 353

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A G+  +IIGTHAL Q+ + ++ L LVI+DEQHRFGV QR +L QK T PHVL+MTATPI
Sbjct: 354 ADGRIQMIIGTHALIQEGVNFHNLGLVIIDEQHRFGVDQRARLQQKGTYPHVLIMTATPI 413

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRT+ L+  GD+ +S I E P GRKP+KT  +  +  + +       ++EG++ Y +CP 
Sbjct: 414 PRTMTLSVYGDLAVSLIKEMPPGRKPVKTYAVDSSYKERLRTFFGKEMAEGRQVYVVCPL 473

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +EE ++ + ++  E +  L E+F  +  + ++HGRM   +K+ VM++F  G   LL++TT
Sbjct: 474 VEESEKLDLQAAEELYLELKEYFYKAYEVGLVHGRMKPSEKDEVMNAFHRGEILLLVSTT 533

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVG++V +A+I+ +E AE FGL+QLHQLRGRVGRG   S CIL+     +  S  RL 
Sbjct: 534 VIEVGVNVPNATIMCVEGAERFGLSQLHQLRGRVGRGAHQSYCILVSDSK-NDVSQERLK 592

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +++  +DGF +AE+DL  R  G++ G+ QSG+P   +A       +L  ARKD
Sbjct: 593 LMEQIQDGFELAEQDLLIRGSGQLFGLAQSGLPDLRVANIIKDIEILVKARKD 645


>gi|124002554|ref|ZP_01687407.1| ATP-dependent DNA helicase RecG [Microscilla marina ATCC 23134]
 gi|123992383|gb|EAY31751.1| ATP-dependent DNA helicase RecG [Microscilla marina ATCC 23134]
          Length = 698

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 245/692 (35%), Positives = 386/692 (55%), Gaps = 21/692 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI-VT 71
           +   +GVG      L+K +         + DL+ Y+P    DR    +I+E++E    V 
Sbjct: 9   IEFLKGVGPAKGELLNKEL-----GIFTYSDLILYYPFKHEDRTKVHRIAELNEGMTAVQ 63

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           ++G I +        ++       DGTGE+ L++F +    ++          V GK + 
Sbjct: 64  LSGRIIRTQVIGEGHKKRLVAYFGDGTGEVELIWF-KGVTWMQKQINANATYLVFGKPQF 122

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-----VDLFKKIIVEALSR-LPVL 185
             ++  + HP     N  +     ++ VY++   +           K++   L      +
Sbjct: 123 FNHKFSIAHPEIELLNPAEQQSGFLQPVYTVTEKMKRKYVYSKNISKMLRTLLPMAYQHI 182

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL-MR 244
            E + + +LQ+    +  +A   IH P   KD +W   A  RL ++EL   Q+ LL   +
Sbjct: 183 EENLSEAILQRYRLIARRDAVVNIHFP---KDQQWLKRATTRLKFEELFYIQLKLLKEQK 239

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            + K   G        I     +++PF  T +Q+   ++I +DM+   +M R+LQGDVGS
Sbjct: 240 HKKKIYQGQTFKDTSLIKDFYEKHLPFELTDAQKRVCREIYRDMASGKQMNRLLQGDVGS 299

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA I+M +A+ +G QA ++AP  ILA+QHY+ +KK+     I ++I+TG+     R
Sbjct: 300 GKTIVAFISMLSAIGSGAQACMVAPTEILAEQHYQGLKKFADKLGITIDILTGSTRTRDR 359

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---AP 421
           R    R+ +G   I++GTHALF+D +Q+  L L IVDEQHRFGV+QR KL ++ +    P
Sbjct: 360 RVLHARLENGNLKILVGTHALFEDKVQFDNLGLCIVDEQHRFGVEQRSKLWKRNSENLYP 419

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H+L+MTATPIPRTL +T  GD+D+S I E PAGRKPIKTV     +   +   L+  ++ 
Sbjct: 420 HILVMTATPIPRTLAMTLYGDLDVSVIDELPAGRKPIKTVHRYDAQRLRMFGFLREQIAL 479

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++ Y + P IEE +   ++++++   S+   F    ++I+HG+MS +DK+  M  FK G
Sbjct: 480 GRQVYIVYPLIEESETLEYKNLMDGHESIQRAFPDQHLSIVHGQMSSVDKDFEMQRFKKG 539

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++++ATTVIEVG+DV +A++I+IENAE FGL+QLHQLRGRVGRG E S CIL+    +
Sbjct: 540 ETQIMVATTVIEVGVDVPNATVIVIENAERFGLSQLHQLRGRVGRGAEQSYCILMTDYKI 599

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           SK   TRL  +  T +GF IA+ DLK R  G ++G +QSG+    IA       +L+ AR
Sbjct: 600 SKEGRTRLETMVKTNNGFEIADVDLKLRGPGNMMGTQQSGLMNLQIADLAKDGKILQEAR 659

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           K A+ I+ +DP+L S+    ++  + L Q  +
Sbjct: 660 KMAQEIIEEDPELESLENSKMKEFMNLDQKTQ 691


>gi|320547460|ref|ZP_08041746.1| DNA helicase RecG [Streptococcus equinus ATCC 9812]
 gi|320447805|gb|EFW88562.1| DNA helicase RecG [Streptococcus equinus ATCC 9812]
          Length = 671

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 243/684 (35%), Positives = 379/684 (55%), Gaps = 29/684 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + +   +G+G K +    K+      +     DLL Y+P  + D   +  + ++ +  
Sbjct: 3   LQSSIVELKGIGPKSAEKFHKL------DIYTIEDLLLYYPFRYEDFKSKSAL-DLVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      +  G   IT+ FF +    L +    G  + + 
Sbjct: 56  KAVITGTVVTPANVQYYGYKRNRLSFKIRQGEAVITVSFFNQ--PYLSDKVELGSDVAIF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-- 184
           GK   LK+ +  +    I    +D     ++ VY +  G+S     K I  A        
Sbjct: 114 GKWDALKSAVTGMK---ILAQVEDD----MQPVYRVAQGISQVALVKAIKSAFEIGAQNW 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE + + LL+K    S A+A   +H P   KD      A  R+ ++EL   Q+ L  ++
Sbjct: 167 LPENLPQVLLEKYRLLSRAKATAAMHFP---KDLAEYKQALRRIKFEELFYFQMNLQALK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
              K E   + I  + K   + +  +PF  T  Q+ ++ DIL DM     M R+LQGDVG
Sbjct: 224 ADNKSEANGLAIAFDEKKMAEKIAALPFVLTGGQKRSLSDILSDMRSGGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM AA  AG Q+ +M P  ILA+QH+E + +      + + I+T  M  A 
Sbjct: 284 SGKTVVASLAMYAAYTAGFQSALMVPTEILAEQHFESLTQLF--PDLSIAILTSGMKSAA 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++ AL  IA G   +I+GTHAL QD++ Y++L LVI DEQHRFGV QR    +K   P V
Sbjct: 342 KKAALTAIADGSVDMIVGTHALIQDAVSYHRLGLVITDEQHRFGVNQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   +++ V++ +K  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLEVVLDWVKKELQKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY I P IEE +  + ++ +     L  +F   + ++++HGRM + +KE++M  FK   
Sbjct: 462 QAYVISPLIEESESLDLKNAIALHEELSAYFDRTAEVSLMHGRMKNDEKEAIMQDFKAQK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG++ S  IL+ +P  +
Sbjct: 522 SQVLVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGQKQSYAILVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T DGF++AE DLK R  GEI G +QSG+P+F +A      ++LE AR+
Sbjct: 581 QTGKERMKIMTETTDGFVLAEADLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARR 640

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
            A  I+++    ++   Q I   L
Sbjct: 641 VASQIVSEKDWKSNPLWQVISQNL 664


>gi|261379837|ref|ZP_05984410.1| ATP-dependent DNA helicase RecG [Neisseria subflava NJ9703]
 gi|284797526|gb|EFC52873.1| ATP-dependent DNA helicase RecG [Neisseria subflava NJ9703]
          Length = 729

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/666 (36%), Positives = 364/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 66  AKKLEKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 118

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK   +   M+HP  
Sbjct: 119 FKPRKQLIVQIADGSGSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEMIHPKI 178

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
               S  +    +  +Y    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 179 RDAESSGL-AESLTPIYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLSRLKLPHLA 236

Query: 204 EAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +      S    PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 237 ESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGSATALGGDG 296

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q +   +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 297 ILTQALRHALPFALTDAQERVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIE 356

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   + V  ++G+  +  + +A  ++A G   I 
Sbjct: 357 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGTVKIA 416

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D +++  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 417 VGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKSKGRDVHQLMMSATPIPRTLAMSF 476

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE +   
Sbjct: 477 FADLDVSVIDELPPGRTPIKTRLVNNIRRAEVEGFVLNICRKGQQAYWVCPLIEESETLQ 536

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+DV 
Sbjct: 537 LQTATETLAQLQAALPELNIGLVHGRMKAAEKAEVMAQFAAGHLNVLVATTVIEVGVDVP 596

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+    DGF
Sbjct: 597 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGF 656

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A  E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 657 EIAHQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPMLIEQNPEI--VEA 714

Query: 679 QSIRIL 684
              R L
Sbjct: 715 HLARWL 720


>gi|288906074|ref|YP_003431296.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus UCN34]
 gi|306832113|ref|ZP_07465267.1| DNA helicase RecG [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|288732800|emb|CBI14376.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus UCN34]
 gi|304425552|gb|EFM28670.1| DNA helicase RecG [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 671

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 244/684 (35%), Positives = 377/684 (55%), Gaps = 29/684 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + +   +G+G K +    K+      +     DLL Y+P  + D     ++SE+++  
Sbjct: 3   LQSSIVELKGIGAKSAEKFYKL------DIYTIEDLLLYYPFRYEDF-KSKRVSELADGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      +  G   I + FF +    L +    G  I + 
Sbjct: 56  KAVITGTVVTPANVQYYGYKRNRLSFKIKQGEAVIAISFFNQ--PYLADKVELGSDIAIF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-- 184
           GK   LK+ +  +    I    +D     ++ VY +  G+S +   K I  A        
Sbjct: 114 GKWDALKSAVTGMK---ILAQVEDD----MQPVYRVAQGISQNALVKAIKSAFEIGAQNW 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE + + LL K      A+A   +H P   KD      A  R+ ++EL   Q+ L  ++
Sbjct: 167 LPENLPQVLLDKYRLLGRAQATAAMHFP---KDLAEYKQALRRIKFEELFYFQMNLQALK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
              K E   + I  + +     +  +PF+ T  Q  ++ DIL DM     M R+LQGDVG
Sbjct: 224 ADNKSEANGLAIAYDEQKVADKIAALPFTLTGGQRRSLDDILADMRSGGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH+E + +      + + I+T  M  A 
Sbjct: 284 SGKTVVASLAMYATYTAGFQSALMVPTEILAEQHFESLTQLF--PALSIAILTSGMKTAA 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++ AL  IA G   +I+GTHAL QD++ Y++L LVI DEQHRFGV QR    +K   P V
Sbjct: 342 KQAALSAIADGSVDMIVGTHALIQDAVTYHRLGLVITDEQHRFGVNQRRVFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   +++ V++ +K  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLEVVLDWVKKELQKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
           +AY I P IEE +  + ++ V     L  +F  S  +A++HGRM + +KE++M  FK   
Sbjct: 462 QAYVISPLIEESESLDLKNAVALHEELSAYFADSATVALMHGRMKNDEKEAIMQDFKAQK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG++ S  IL+ +P  +
Sbjct: 522 SQVLVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGDKQSYAILVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T DGF++AE DLK R  GEI G +QSG+P+F +A      ++LE AR+
Sbjct: 581 QTGKERMKIMTETTDGFVLAEADLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARR 640

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
            A  I+++     + + Q +   L
Sbjct: 641 VASQIVSEKDWQNNPQWQIVSQNL 664


>gi|270292353|ref|ZP_06198564.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M143]
 gi|270278332|gb|EFA24178.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M143]
          Length = 671

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/687 (34%), Positives = 381/687 (55%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ ++ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S      +I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQAGLVNVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +       N+PFS T +QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSKEKVTAAKENLPFSLTPAQEKSLREILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PDLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRVLREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEGWQEDPEWRMIALHLEKREH 669


>gi|15901531|ref|NP_346135.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae TIGR4]
 gi|111657513|ref|ZP_01408256.1| hypothetical protein SpneT_02001279 [Streptococcus pneumoniae
           TIGR4]
 gi|225857310|ref|YP_002738821.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae P1031]
 gi|18279285|sp|Q54900|RECG_STRPN RecName: Full=ATP-dependent DNA helicase recG
 gi|14973191|gb|AAK75775.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae TIGR4]
 gi|225725262|gb|ACO21114.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae P1031]
          Length = 671

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 238/687 (34%), Positives = 386/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P+   ++     A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFPKYLAEY---KQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEAWQEDPEWRMIALHLEKKEH 669


>gi|332293535|ref|YP_004432144.1| ATP-dependent DNA helicase RecG [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171621|gb|AEE20876.1| ATP-dependent DNA helicase RecG [Krokinobacter diaphorus 4H-3-7-5]
          Length = 700

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/696 (34%), Positives = 366/696 (52%), Gaps = 27/696 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M P+F   L  P+   +GVG   +  L   +         F DL+   P+ +ID+    K
Sbjct: 1   MNPTF---LQTPIDYLKGVGPNRADLLRSEL-----GIHTFQDLMHLFPNRYIDKTQYYK 52

Query: 61  ISEI-SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I E+      V I G  S     + + RR       D TG++ L++F R  + ++     
Sbjct: 53  IGELERNNADVQIIGKFSGLKMIEGKGRR-LVATFKDETGQMELVWF-RGHKWIRESIKL 110

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPT-----GLSVDLFKK 173
                + GK         M HP        + +    ++ VY         G++  +   
Sbjct: 111 NTPYVIFGKCNYYNGNFSMPHPEMELLADHEKSIKSAMQPVYPSTEKLSNRGITNKVVNG 170

Query: 174 IIVEA-LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           ++    L     L E + K +L +       EA   +H P+     E  + A+ RL ++E
Sbjct: 171 VMQTLFLECKNHLFESLSKPILTELKLMPKREALLNVHFPQSQ---EHLARAQYRLKFEE 227

Query: 233 LLAGQIALLLMRKQFKKEIG-IPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQ 290
               Q+ L       K +I   P    G         ++PF  T +Q+  +K+I  D+  
Sbjct: 228 FFYIQLQLAFKNVNHKTKIKGYPFEKIGPNFTTFYNDHLPFELTGAQKRVLKEIRHDLGT 287

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
             +M R+LQGDVGSGKT+VAL++M  A++ G QA +MAP  ILA QHY  +K+  +    
Sbjct: 288 NAQMNRLLQGDVGSGKTIVALMSMLMALDNGFQACLMAPTAILAVQHYHGLKELCKELNT 347

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            + ++ G+   + RR   E++ +G+ +I+IGTHAL +D +++  L L ++DEQHRFGV+Q
Sbjct: 348 SISLLQGSTKTSKRRIIHEQLENGELNILIGTHALLEDKVKFKNLGLAVIDEQHRFGVKQ 407

Query: 411 RLKLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           R KL  K   P HVL+MTATPIPRTL +T  GD+D+S I E P GRK IKTV    +   
Sbjct: 408 RSKLWHKNEYPPHVLVMTATPIPRTLAMTVYGDLDVSVIDELPPGRKSIKTVHRYDSNRL 467

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMS 526
           +V + ++  ++ G++ Y + P I+E +  +++ +++ + S+   F      I+I+HG+M 
Sbjct: 468 KVFKFIRDEIALGRQVYIVYPLIQESEAMDYKDLMDGYESISREFPMPKYQISIVHGQMK 527

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DKE  M+ F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG
Sbjct: 528 PADKEIEMNRFIKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRG 587

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            E S CIL+    LS +S  RL  +  T DGF IAE DLK R  G+I G +QSG     I
Sbjct: 588 AEQSYCILMTSHKLSSDSKVRLETMTRTNDGFEIAEVDLKLRGPGDITGTQQSGALNLKI 647

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           A     + +L++AR  A  ++  DP       Q IR
Sbjct: 648 ADIIRDNDILKVARSYAWAVVKDDPTFKKEENQIIR 683


>gi|322375696|ref|ZP_08050208.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C300]
 gi|321279404|gb|EFX56445.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C300]
          Length = 671

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 237/687 (34%), Positives = 384/687 (55%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    ++     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEED----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQSLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVSAVKESLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++    +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PDLKLALLTGSLKAVEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     ++++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVSLLHGKMKSDEKDQIMQDFKEQKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEGWQEDPEWRMIALHLEKKEH 669


>gi|190575687|ref|YP_001973532.1| ATP-dependent DNA helicase RecG [Stenotrophomonas maltophilia
           K279a]
 gi|190013609|emb|CAQ47244.1| putative ATP-dependent DNA helicase [Stenotrophomonas maltophilia
           K279a]
          Length = 703

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 248/692 (35%), Positives = 374/692 (54%), Gaps = 27/692 (3%)

Query: 2   RPSFLNPLFAP-----LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH 56
           R + + P+ +P     L+   GVG   +  L               DL  + P  + DR 
Sbjct: 3   RKAAVTPVLSPSGEASLAMLAGVGPAVAAKLQ------ARGLATLQDLWLHLPLRYEDRT 56

Query: 57  YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLND-GTGEITLLFFYRKTEMLKN 115
              +I ++       + G +       ++ R   K+ + D G G + L FF+ + + +  
Sbjct: 57  RLTRIEDLRNGVPAQVEGRVVAVER-GMRYRPMLKVAVEDEGRGTLVLRFFHFRQQQV-G 114

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFH--NSQDVNFPLIEAVYSLPTGLSVDLFKK 173
            F  G ++   G  K  +  + +VHP Y     N        ++ VY    G+     +K
Sbjct: 115 QFAVGNRLRCFGTPKPGQLGLEIVHPSYQVLGRNDDPELGDRLDPVYPTVEGVGPMTMRK 174

Query: 174 IIVEALSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARER 227
           +I +AL RLP     E +    L     PS+  A   +H P    D       T PA+ R
Sbjct: 175 LIGQALDRLPEESALELLPSGWLDGLGLPSLRSALLTVHRPPPDADLVALAAGTHPAQRR 234

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           LA +ELLA  ++L   R   +     P+   GK+A+ +L+ +PF+ T +Q    K I +D
Sbjct: 235 LAMEELLAHHLSLRRQRIALQAHHAPPLAGPGKLAKALLKQLPFALTGAQARVFKQIRED 294

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           +++ + MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + + 
Sbjct: 295 LARPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRGWLEP 354

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + +  + G +    R K +E++A G+A +++GTHAL Q+++ +  L L IVDEQHRFG
Sbjct: 355 LGVRIAWLAGKVTGKARAKVMEQVASGEAQVVVGTHALMQEAVVFQDLALAIVDEQHRFG 414

Query: 408 VQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           V QRL L  K       PH L+MTATPIPRTL ++   D+D+S I E P GR P++TV +
Sbjct: 415 VHQRLALRDKGAGGNSVPHQLVMTATPIPRTLAMSEYADLDVSAIDELPPGRTPVQTVAL 474

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522
             +R  E+IER+ +   EG++ YW+C  IEE +E +       + SL        + ++H
Sbjct: 475 NNDRRPELIERIALACQEGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRVGLVH 534

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GR+   +K + M +FK G   LL+ATTVIEVG+DV +AS+++IENAE  GLAQLHQLRGR
Sbjct: 535 GRLKAAEKLATMVAFKAGDIDLLVATTVIEVGVDVPNASLMVIENAERLGLAQLHQLRGR 594

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG  +S C+LLY  PLS+ +  RL  ++ T DGF+IAE+DL+ R  GE+LG +Q+G+ 
Sbjct: 595 VGRGSAVSRCVLLYQAPLSQMARERLQTMRETNDGFVIAEKDLELRGPGELLGTRQTGLA 654

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            F IA       LL      A+ +L Q P L 
Sbjct: 655 GFRIADLARDAGLLPGVHDLAERLLDQQPTLA 686


>gi|319946374|ref|ZP_08020612.1| DNA helicase RecG [Streptococcus australis ATCC 700641]
 gi|319747527|gb|EFV99782.1| DNA helicase RecG [Streptococcus australis ATCC 700641]
          Length = 671

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 237/675 (35%), Positives = 382/675 (56%), Gaps = 30/675 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   LS   G+G K +    K+            DLL Y P  + D      + ++ +  
Sbjct: 3   LHQSLSVLPGIGPKSAEKYKKL------GIETVEDLLLYFPFRYEDF-KSKNVLDLEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G ++  ++ Q    +  ++      GE+ L   +     L +    G+ + V GK
Sbjct: 56  KAVVSGLVATPANVQYYGYKRNRLRFTIKQGELVLAVSFFNQPYLADKIELGQTVAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             K K  +  +    +    +D     ++ VY L  G+S     K+I  A       +L 
Sbjct: 116 WDKAKGALTGMK---LLAQVEDD----LQPVYRLSQGVSQSALVKVIKTAFEAGLDQLLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + L+ K    S  +A   +H P   KD E    A  R+ ++ELL  Q+ L +++++
Sbjct: 169 ENLPQILMDKYHLLSRRQAVRAMHFP---KDLEEYKQALRRVKFEELLFFQLQLQVLKEE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            +    GI ++ + K  + +  ++PF+ T++QE ++ +IL DM     M R+LQGDVGSG
Sbjct: 226 NRSVGQGIVLDWDEKKLKALQASLPFALTEAQEKSLSEILADMRSPYHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH + +      + + + ++TG++  A RR
Sbjct: 286 KTVVAGLAMYAAVTAGKQAALMVPTEILAEQHLQSLTSLF--SNLRILLLTGSLKAAERR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE I  GQ  +++GTHAL Q+ + ++ L LVI+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 ERLELIQTGQVDLVVGTHALIQEGVHFHDLGLVIIDEQHRFGVAQRRILREKGQNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRK I T  +   +++ V++ L   + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKEIITRWVKHQQLNLVLDWLVKEIEKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  +F   + IA++HG+M   +KE++M +FK G   
Sbjct: 464 YVISPLIEESEALDLKNAIALEEELIAYFGDRARIALLHGKMKGEEKEAIMQAFKQGEID 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LL++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  +++
Sbjct: 524 LLVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKCRMKIMTETTNGFVLAEEDLKLRGSGEIFGTRQSGIPEFQVANLIEDYPILEEARKVA 642

Query: 664 KHILT-----QDPDL 673
             ++T     + PD 
Sbjct: 643 VQVVTTPNWREHPDW 657


>gi|293368690|ref|ZP_06615296.1| ATP-dependent DNA helicase RecG [Bacteroides ovatus SD CMC 3f]
 gi|292636231|gb|EFF54717.1| ATP-dependent DNA helicase RecG [Bacteroides ovatus SD CMC 3f]
          Length = 698

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 235/689 (34%), Positives = 371/689 (53%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +           DL++Y P  +IDR     I EI
Sbjct: 1   MFDLSTRDIKFISGVGPQKAAVLNKELE-----IYSLHDLIYYFPYKYIDRSRIYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +    ++R      +DGTG + L++F +  + +   +    + 
Sbjct: 56  DGNMPYIQLKGEILGFETIGEGRQRRLTAHFSDGTGVVDLVWF-QGIKYILGKYKLHEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            + GK      RI + HP         ++   ++  Y+         L+    +K++   
Sbjct: 115 IIFGKPTVFNGRINVAHPDVDKPEDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + ++   LPE +   LL +     + EA   IH P      +    A+ RL ++EL   Q
Sbjct: 175 IQQIQEPLPETLSSKLLAEHHLMPLTEALRNIHFPTNP---DVLRRAQYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + K+  G      G +      +N+PF  T +Q+  +K+I  D+    +M 
Sbjct: 232 LNILRYAKDRQKRYRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G   I+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L 
Sbjct: 352 TGSIKGKRREAILTGLLTGDVKILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   
Sbjct: 412 SKNVQPPHVLVMTATPIPRTLAMTLYGDLDVSIIDELPPGRKPITTIHQFDNRRESMYRS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K+  
Sbjct: 472 VRKQIEEGRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPKCTVCKVHGKMKPAEKDEQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MQLFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+ +  L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ I+ QDP   +   + +
Sbjct: 652 GQLLQYVRAIAESIVEQDPAAQNPENEIL 680


>gi|297537284|ref|YP_003673053.1| ATP-dependent DNA helicase RecG [Methylotenera sp. 301]
 gi|297256631|gb|ADI28476.1| ATP-dependent DNA helicase RecG [Methylotenera sp. 301]
          Length = 679

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 239/648 (36%), Positives = 366/648 (56%), Gaps = 9/648 (1%)

Query: 30  IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP 89
           + N    +      LL + P  +ID  +   + ++       + G I  H+    + R+ 
Sbjct: 15  VANLNKLDVNTTQALLLHLPLRYIDETHMTSVRDLRVGEPSQVEGEIV-HAEVTYKPRKA 73

Query: 90  YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ 149
               L D +G++TL F +     + +    G K+ V G+++       MVHP       +
Sbjct: 74  LIARLEDASGQLTLRFLHFYPSQI-SALKVGNKLRVYGEVRSGFFGNEMVHPTCKAVGEK 132

Query: 150 DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209
            +    +  VY    GL+    +K I  AL +  VL E +   + Q+  FPS + +   +
Sbjct: 133 TMVAETLTPVYPTVAGLTQVNLRKAIATALKQ-NVLNETLPVSVYQQYQFPSFSASLKAL 191

Query: 210 HNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI 265
           HNP    D     E T+P  +RLA+DELLA Q+++     + +           ++   +
Sbjct: 192 HNPPPDADLQGLEEKTTPEWQRLAFDELLAQQLSMRKHYARRRSVDAPQFKQSKQLVSAL 251

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+++PF+ T++Q+    +I  D++Q + M R+LQGDVGSGKT+VA +A   ++E+G Q  
Sbjct: 252 LKSLPFALTQAQQKVAVEIQNDLTQPHPMQRLLQGDVGSGKTIVACMAALQSIESGWQVA 311

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA+QH+  +  +     I +   TG+  +  R  A++ IA G A ++IGTHAL
Sbjct: 312 LMAPTEILAEQHFRKMIGWLTPLNIKIAWHTGSQSKKDREAAMQIIADGSAQLVIGTHAL 371

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDID 444
           FQ+++Q+ KL L I+DEQHRFGV QRL L QK    PH L+MTATPIPRTL ++   D+D
Sbjct: 372 FQEAVQFKKLGLAIIDEQHRFGVHQRLALRQKGQPEPHQLMMTATPIPRTLSMSYYADLD 431

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           +S I E P GR PI T ++   R DE+++R++   ++G +AYW+CP IEE +     +  
Sbjct: 432 VSVIDELPPGRTPIVTKLVSDVRRDEILQRVREACAQGNQAYWVCPLIEESEALQLATAN 491

Query: 505 ERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           + +  +   F    I ++HGRM   +K++VM +F  G  +LL+ATTVIEVG+DV +AS++
Sbjct: 492 DTYALMQSEFPELKIGLVHGRMKPAEKQAVMAAFSAGETQLLVATTVIEVGVDVPNASLM 551

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +IE+AE  GL+QLHQLRGRVGRG   S+CILLY   LS+ +  RL V+  + DGF IA+ 
Sbjct: 552 VIEHAERMGLSQLHQLRGRVGRGAAKSTCILLYQNKLSETARARLKVIYESNDGFAIAQA 611

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           DL  R  GE LG +QSG+P   IA       LL  A+  A  ++ + P
Sbjct: 612 DLNLRGPGEYLGTRQSGVPMLKIADLNRDADLLNAAKNMADRLIKEHP 659


>gi|253570321|ref|ZP_04847730.1| ATP-dependent DNA helicase recG [Bacteroides sp. 1_1_6]
 gi|298384865|ref|ZP_06994424.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 1_1_14]
 gi|251840702|gb|EES68784.1| ATP-dependent DNA helicase recG [Bacteroides sp. 1_1_6]
 gi|298262009|gb|EFI04874.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 1_1_14]
          Length = 698

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 233/689 (33%), Positives = 370/689 (53%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +           DL++Y P  ++DR     I EI
Sbjct: 1   MFDLTTRDIKFISGVGPQKAAVLNKELE-----IYSLYDLIYYFPYKYVDRSRIYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +    ++R      +DGTG + L++F +  + +   +    + 
Sbjct: 56  DGNMPYIQLKGEILGFETIGEGRQRRLTAHFSDGTGIVDLVWF-QGIKYILGKYKLHEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            + GK      RI + HP     +   ++   ++  Y+         L+    +K++   
Sbjct: 115 IIFGKPTVFNGRINVAHPDIDKPDDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + ++   LPE +   +L       + EA   IH P            + RL ++EL   Q
Sbjct: 175 IQQIQEPLPETLSPKILSDHHLMPLTEALRNIHFPTNPDSLRRA---QYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + ++  G      G +      +N+PF  T +Q+  +K+I  D+    +M 
Sbjct: 232 LNILRYAKDRQRRYRGYIFERVGDVFNTFYSQNLPFQLTGAQKRVLKEIRNDVGSGRQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLLALDNGFQACMMAPTEILANQHYETIKELLFGMDIRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G   I+IGTHA+ +D++ +  L LV++DEQHRFGV QR +L 
Sbjct: 352 TGSIKGKKREAILTGLLTGDVKILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   
Sbjct: 412 TKNIQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRA 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P I+E ++ + +++ E +  + E F    +A +HG+M   +K+  
Sbjct: 472 VRKQIEEGRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPGCTVAKVHGKMKSAEKDEQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MQLFISGQAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+ +  L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIANLARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ I+  DP   S   + +
Sbjct: 652 GQLLQYVRSIAEDIVDNDPSAQSPENEIL 680


>gi|262277199|ref|ZP_06054992.1| ATP-dependent DNA helicase RecG [alpha proteobacterium HIMB114]
 gi|262224302|gb|EEY74761.1| ATP-dependent DNA helicase RecG [alpha proteobacterium HIMB114]
          Length = 683

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 254/695 (36%), Positives = 404/695 (58%), Gaps = 15/695 (2%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LF P+   +G+G K    L +       N    +DLL   P+  IDR + PK+ ++  
Sbjct: 3   NSLFDPVLKIKGIGPKIQKKLEE------KNIFNKVDLLLNLPTGTIDRRFCPKLDQLEI 56

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            +I TI     ++ +F   K  P ++   D   +I L+FF  +   +K +     ++ ++
Sbjct: 57  GKISTIFATPIKY-NFPRIKNLPSRVSCVDEFSKIDLVFFNSRENYIKQILPLNEEVVIS 115

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK+   KN+  + +P YI    +  +   I + Y   +G+S    +KI  E    L  + 
Sbjct: 116 GKVTFYKNKYQITNPDYIRSTDKGADIKKIMSKYPSISGVSDKTLQKIYSEEADNLSRID 175

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           EW + + L K  + S  E+   IHNP   +D    SP  ERLA+DE+ +  +    ++K+
Sbjct: 176 EWHDLNFLNKMKWLSWPESLKRIHNPVYNEDVNKNSPYYERLAFDEIYSNLLIFNEIKKR 235

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            +K   IP  +      KI + +PF  T  Q   + +I++DM    +M+R+LQGDVGSGK
Sbjct: 236 LEKIKKIPKKISLDQINKIKKLLPFQLTDDQNKCLDEIIEDMKSNKKMMRVLQGDVGSGK 295

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T++ALI+      +  Q+ IM P  ILA QHY+F +K  +N  I +E+++G      ++K
Sbjct: 296 TVLALISSYLNYLSNYQSAIMVPTEILAIQHYKFFQKIFKNQDIKIELLSGKTKIKDQKK 355

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLL 425
             E++ + + +IIIGTH+LFQ+ I+++ L LV++DEQH+FGV+QR+ L+QK +    V+L
Sbjct: 356 VREKLKNNEINIIIGTHSLFQEKIEFFNLGLVVIDEQHKFGVKQRINLSQKGSDNTDVIL 415

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTLVLT+ GD++IS I  KP     I+T+  P+N++DE+I+ +   ++EG + 
Sbjct: 416 MTATPIPRTLVLTNYGDMNISTIKNKPFSNNNIETLTKPLNKLDEIIDFVNKKINEGDQI 475

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           YW+CP IEE ++    + ++R++ L +  +  I +IHG +S  +K+ +M+ F +G  K +
Sbjct: 476 YWVCPLIEESEKLKLTAAIKRYDFLKDKISCDIGLIHGSLSKNEKDLIMEKFIDGNIKCI 535

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           I+TTVIEVGID  +A+ I+IENAE FGLAQLHQLRGRVGR    + C+L+Y   +S+   
Sbjct: 536 ISTTVIEVGIDNPNANTIVIENAERFGLAQLHQLRGRVGRSGSKAYCLLVYSSSISETGK 595

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL ++K++ DGF I+EEDLK R  G+I+G KQSG   F IA P  H  L ++A+ + + 
Sbjct: 596 KRLKIMKDSCDGFFISEEDLKLRGFGDIIGYKQSGEKDFTIADPLYHSHLFDLAKDEIEK 655

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
                  L        +ILL +++ ++    I  G
Sbjct: 656 -------LDEESYAKFKILLKIFKKDKVLNIIDTG 683


>gi|311029989|ref|ZP_07708079.1| ATP-dependent DNA helicase RecG [Bacillus sp. m3-13]
          Length = 682

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 236/676 (34%), Positives = 374/676 (55%), Gaps = 23/676 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +++ +G+G++ +  L               DLL + P  + D   R  ISE+  E  +T+
Sbjct: 9   VTSLKGIGEETANSL------HAMGIYSVEDLLMHFPYRYEDYRLR-DISEVKHEEKITV 61

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +    S     ++  ++      G   +  + F R     KN       IT+TGK  
Sbjct: 62  EGKVHGEPSLMYFGKKKSRLTFRFYVGRFLVKAVCFNR--PYYKNKLSINDTITITGKWD 119

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189
           + +  I ++  H+       +    +E VYS+   ++V   +K I  AL      L   +
Sbjct: 120 QHRQTITVMEIHF----GPFMKESEVEPVYSVKGNITVKQMRKFIGNALQTYGSALESAL 175

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFK 248
              +LQK   PS  ++   +HNP      E    AR    Y+E L  Q+ +  +RK + +
Sbjct: 176 PVSILQKYKLPSKGDSVRALHNPVNQ---ETLKHARRYFVYEEFLLFQLKIQALRKYKRE 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +  G+         ++ +  +PF  T +Q   + +IL DM+   RM R+LQGDVGSGKT+
Sbjct: 233 QTEGLVHEFPKSKLERFIATLPFPLTGAQNRVLGEILGDMTSPYRMNRLLQGDVGSGKTV 292

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA I++  A  +G Q  +M P  ILA+QH   +      T++ +E++T ++    RR+ L
Sbjct: 293 VAAISLYGAHLSGYQGALMVPTEILAEQHAHSLTSLFSGTEVNIELLTSSVKGKRRRELL 352

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           ER+A+G+  I++GTHAL Q  + +  L LVI DEQHRFGV+QR  L +K + P VL MTA
Sbjct: 353 ERLANGKIDILVGTHALIQGEVNFKSLGLVITDEQHRFGVEQRRVLREKGSNPDVLFMTA 412

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGRK I+T       ID V+  ++  L +G++AY I
Sbjct: 413 TPIPRTLAITAFGEMDVSIIDEMPAGRKAIETYWAKHQMIDRVLGFVEKELQKGRQAYVI 472

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE ++ + ++ ++  + L  ++     I ++HGR+S  +KE VM++F     +LL+
Sbjct: 473 CPLIEESEKLDVQNAIDVHDMLTHYYRGKWKIGLMHGRLSSDEKEKVMEAFSENEVQLLV 532

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S CILL  P  S+    
Sbjct: 533 STTVVEVGVNVPNATMMVIYDAERFGLSQLHQLRGRVGRGSEQSYCILLADPK-SEVGKE 591

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE+AR+DA  +
Sbjct: 592 RMKIMTETNDGFVLSEKDLELRGPGDFFGRKQSGVPEFKVADMVHDYRALEVARQDAHDL 651

Query: 667 LTQDPDLTSVRGQSIR 682
           L  D        + +R
Sbjct: 652 LYSDSFWVDEEYKGLR 667


>gi|253751213|ref|YP_003024354.1| ATP-dependent DNA helicase [Streptococcus suis SC84]
 gi|253753114|ref|YP_003026254.1| ATP-dependent DNA helicase [Streptococcus suis P1/7]
 gi|253754936|ref|YP_003028076.1| ATP-dependent DNA helicase [Streptococcus suis BM407]
 gi|251815502|emb|CAZ51080.1| ATP-dependent DNA helicase [Streptococcus suis SC84]
 gi|251817400|emb|CAZ55136.1| ATP-dependent DNA helicase [Streptococcus suis BM407]
 gi|251819359|emb|CAR44751.1| ATP-dependent DNA helicase [Streptococcus suis P1/7]
 gi|292557775|gb|ADE30776.1| ATP-dependent DNA helicase RecG [Streptococcus suis GZ1]
 gi|319757485|gb|ADV69427.1| ATP-dependent DNA helicase [Streptococcus suis JS14]
          Length = 672

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 237/679 (34%), Positives = 374/679 (55%), Gaps = 30/679 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   LS   G+G K +    KI            DLL Y+P  + D      I ++ 
Sbjct: 1   MKRLCDELSVLPGIGPKSAEKFLKIS------IQNINDLLTYYPFRYEDF-ESKSIYDLQ 53

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           +     + G +   ++ Q    +  ++  +   GE+ L   +     L +    G+ I V
Sbjct: 54  DGEKAVVVGEVVSPANVQYYGYKRNRLRFSMKQGEVVLAVSFFNQPYLADKIVLGQDIAV 113

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LP 183
            GK  K K  +  +       +        ++ VY +  G+S     K I  A+ +  L 
Sbjct: 114 WGKWDKAKASLTGMKILAQVSDE-------LQPVYHVAQGISQVNLVKAIKTAIDQGYLH 166

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           +L E +   L ++    +  EA   +H P      E    A  R+ ++EL   Q+ L ++
Sbjct: 167 LLEENLPSVLRERYRLMNRREAVFAMHFPTN---LEEYRQALRRMKFEELFYFQLQLQML 223

Query: 244 RKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +   +  +  + I  +       +R +PF  T +Q  A+ +IL DM     M R+LQGDV
Sbjct: 224 KANNRDILNGLKIAYDADRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMNRLLQGDV 283

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA +AM AAV AG QA IM P  ILA+QH+E +++     ++ + ++TG M  A
Sbjct: 284 GSGKTVVAGLAMFAAVTAGMQAAIMVPTEILAEQHFESLRQLF--PELSIALLTGGMKAA 341

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            RR ALE I+ GQ  II+GTHAL Q+S+ Y+KL LV+ DEQHRFGV+QR    +K   P 
Sbjct: 342 ERRTALEAISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREKGDNPD 401

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   ++  V++ L+  L  G
Sbjct: 402 VLMMTATPIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWLERELEVG 461

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNG 540
            + Y+I P IEE +  + ++ V+  + L  HF   + +  +HG+M + +K+++M +FK  
Sbjct: 462 AQVYFISPLIEESEALDLKNAVDLQSDLQAHFGEQVTVDLLHGKMKNDEKDAIMQAFKER 521

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  
Sbjct: 522 KTNILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK- 580

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +++   R+ ++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR
Sbjct: 581 TESGKERMKIMTETTDGFILAEADLKMRGSGEIFGTRQSGLPEFQVANIIEDYPILEEAR 640

Query: 661 KDAKHIL-----TQDPDLT 674
           + A  I+      +DP+ +
Sbjct: 641 RVASQIVSVENWQEDPNWS 659


>gi|229134663|ref|ZP_04263472.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST196]
 gi|229168594|ref|ZP_04296317.1| ATP-dependent DNA helicase recG [Bacillus cereus AH621]
 gi|228615000|gb|EEK72102.1| ATP-dependent DNA helicase recG [Bacillus cereus AH621]
 gi|228648709|gb|EEL04735.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST196]
          Length = 682

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 227/681 (33%), Positives = 371/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       +    V    +E VYS+   L+V   ++ + +A       + E 
Sbjct: 119 DQHRQTIAVS----ELNFGPVVRQQEVEPVYSVKGKLTVKQMRRFVAQAFKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +    S  EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLSRYKLLSRYEALRGLHFPVGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +     Q+    +PF  T +Q   + +I++DM    RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEISLVELQEFTDALPFPLTGAQRRVVDEIMKDMISPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IA+ AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR+ 
Sbjct: 292 VVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGARRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L R+  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LSRLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAI 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  S+R  L 
Sbjct: 651 LVDSEAFWHNDQYASLRTYLD 671


>gi|288801682|ref|ZP_06407124.1| ATP-dependent DNA helicase RecG [Prevotella melaninogenica D18]
 gi|288335724|gb|EFC74157.1| ATP-dependent DNA helicase RecG [Prevotella melaninogenica D18]
          Length = 698

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 232/689 (33%), Positives = 378/689 (54%), Gaps = 22/689 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++ L   +    GVG      L K +         + DLL Y P  ++DR     ISE+S
Sbjct: 1   MDILSQDIMYLPGVGPHRKEILGKEL-----GIHTYRDLLEYFPYKYVDRTKLYLISELS 55

Query: 66  EERI-VTITGYISQHSSFQLQKRRPYKI-LLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           ++   V I G I      ++ KR+   +    DG G   +++F   T+ +   +   ++ 
Sbjct: 56  QDMPFVQIKGRILSFEETEMGKRKKRIVAHFTDGHGVCDIVWFN-GTKYIYQNYQVNKEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEA 178
            + GK      R    HP     +   +N   ++  Y         G++    +K+    
Sbjct: 115 IIFGKPTFFNGRFQFTHPDIDDASQLQLNDMGMQPFYVTTEKMKKAGITSRAVEKLTKML 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           +S+L   L E +   +       S   A   IH P+   D   T  AR RL ++EL   Q
Sbjct: 175 ISKLTEPLEETLPPFITTHLHLISRDAAMRKIHYPKSVDD---TQRARVRLKFEELFYVQ 231

Query: 238 IALLLMRK-QFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L       +K  G   N  G        + +PF  T +Q+  + +I  DM+   +M 
Sbjct: 232 LNILRYASDHRRKYRGYIFNRIGAQFNWFYSHNLPFELTGAQKRVMHEIRADMASGRQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA+QH + IK++ +   + VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLIAIDNGYQACMMAPTEILAEQHLQTIKEFLKGMNLRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG +    R++ L+ +  G  +I++GTHA+ +D +Q+  L + +VDEQHRFGV+QR KL 
Sbjct: 352 TGIVKGKKRQEVLDGLIDGSINIVVGTHAIIEDKVQFQHLGMAVVDEQHRFGVEQRAKLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    +++  +   
Sbjct: 412 SKSENPPHVLVMTATPIPRTLAMTIYGDLDVSIIDELPPGRKPIQTIHKYDDQMASLYSG 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  ++ G++ Y + P I+E +  + +++ + F ++ + F    ++ IHG+M D +KE+ 
Sbjct: 472 IRQQINLGRQVYIVYPLIKESERMDLKNLEDGFEAMQDIFPEFQLSKIHGKMKDKEKEAE 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MQKFVSGQTQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGAEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+ +  L+K +  R+ ++ +T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTNHKLTKETRKRIDIMCDTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             ++++AR++A+ I+  DP    +    +
Sbjct: 652 GQIVQMAREEAQKIIDDDPTCKKIEYNML 680


>gi|182684639|ref|YP_001836386.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CGSP14]
 gi|303254307|ref|ZP_07340415.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS455]
 gi|303258630|ref|ZP_07344610.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP-BS293]
 gi|303261793|ref|ZP_07347739.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263657|ref|ZP_07349579.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS397]
 gi|303266833|ref|ZP_07352712.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS457]
 gi|303269890|ref|ZP_07355632.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS458]
 gi|182629973|gb|ACB90921.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CGSP14]
 gi|301802397|emb|CBW35151.1| ATP-dependent DNA helicase [Streptococcus pneumoniae INV200]
 gi|302598658|gb|EFL65696.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS455]
 gi|302636876|gb|EFL67365.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP14-BS292]
 gi|302640131|gb|EFL70586.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP-BS293]
 gi|302640568|gb|EFL70973.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS458]
 gi|302643601|gb|EFL73869.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS457]
 gi|302646695|gb|EFL76920.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS397]
          Length = 671

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/687 (34%), Positives = 385/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K       +A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLPQSLLDKYKLMFRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFILAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEAWQEDPEWRMIALHLEKKEH 669


>gi|329118091|ref|ZP_08246803.1| DNA helicase RecG [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465751|gb|EGF12024.1| DNA helicase RecG [Neisseria bacilliformis ATCC BAA-1200]
          Length = 679

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/657 (36%), Positives = 360/657 (54%), Gaps = 14/657 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      +     DL+ + P  + D  +   + +        + G +  H    
Sbjct: 16  AKKLEKL------HLHTAWDLVLHLPLRYEDETHIMPLQDAPVGVPCQVEGTVL-HQEVM 68

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + D  G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 69  FKPRKQLIVQIGDNAGNVLFLRFIHFYPSQQKQLAVGKRIRAVGEIKHGFYGDEMIHPKI 128

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
               +  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 129 RDAETGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDDTP-LHDTLPDALLGRLKLPHLA 186

Query: 204 EAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H P  +   +  S    PA +RL +DELLA Q+++ L R++       P+   G
Sbjct: 187 ESLRLLHAPPPSLSVQQLSDGALPAWQRLKFDELLAQQLSMRLARQKRISGQAAPLTGNG 246

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            ++Q +L  +PF+ T +QE A+ +I QDM+Q   M R+LQGDVGSGKT+VA ++  AA+E
Sbjct: 247 TLSQPLLNALPFALTCAQEKALAEIRQDMAQTFPMHRLLQGDVGSGKTIVAALSALAAIE 306

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           AG Q  +MAP  ILA+QH+   K++     + +  ++G+  +  + +A  +++ G   I 
Sbjct: 307 AGAQVAVMAPTEILAEQHFIKFKQWFDPLGLDIAWLSGSQRKKAKDEAKAQLSDGLVKIA 366

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALFQD + +  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 367 VGTHALFQDDVAFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRTLAMSF 426

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PI+T ++   R  EV   L  +  +G++AYW+CP IEE +   
Sbjct: 427 FADLDVSLIDELPPGRTPIQTRLVNSLRRAEVEGYLLGICRKGQQAYWVCPLIEESETLQ 486

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K +VM  F  G   +L+ATTVIEVG+DV 
Sbjct: 487 LQTATETLEQLQTALPELNIGLVHGRMKATEKATVMAEFAAGRLNVLVATTVIEVGVDVP 546

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+    DGF
Sbjct: 547 NAALMVIEHAERMGLAQLHQLRGRVGRGAAKSVCVLLFAEPLSELAKARLKVIYEHTDGF 606

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            IA +DL  R  GE LG +QSG+P    A  E    LLE AR  A  ++ Q+PD+  
Sbjct: 607 EIARQDLNIRGPGEFLGARQSGVPMLRFANLEQDLHLLERARDIAPQLIEQNPDIVK 663


>gi|168484888|ref|ZP_02709833.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           CDC1873-00]
 gi|172041962|gb|EDT50008.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           CDC1873-00]
          Length = 671

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 238/687 (34%), Positives = 384/687 (55%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L+ IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLQTIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRK I T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKSIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEAWQEDPEWRMIALHLEKKEH 669


>gi|295397853|ref|ZP_06807916.1| DNA helicase RecG [Aerococcus viridans ATCC 11563]
 gi|294973898|gb|EFG49662.1| DNA helicase RecG [Aerococcus viridans ATCC 11563]
          Length = 683

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 229/694 (32%), Positives = 374/694 (53%), Gaps = 25/694 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
               L   ++  +GVG K +  L K+        +   DLL++ P  + D        E+
Sbjct: 1   MARALSDSVTVLKGVGAKKAALLEKV------GISTVEDLLYHFPFRYEDVS-VKSAGEL 53

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKIL--LNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            +    ++ G +      Q   R   ++   L      + ++FF +    LK      ++
Sbjct: 54  VDNTKASVKGVVVTEPVVQYFGRNRNRLTYRLAMDHEVLQVIFFNQ--PYLKKNIQVNQE 111

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           I V GK +  K +I+ +   +  H  ++      EA+Y L  GLS      +I +A+   
Sbjct: 112 IVVYGKFEAAKQQIVGIK-LFSNHQDEESGDNDFEAIYHLTQGLSTKSLTDLIKQAIDLY 170

Query: 183 -PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
             ++ E + + L +K        A   IH P   ++      AR +L Y EL    + L 
Sbjct: 171 GDLVVELLPETLREKYQLMPHKLAIQQIHFPDSQEN---NRQARRQLKYQELFLYALKLQ 227

Query: 242 LMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             + +Q +   G  I  +    +  ++ IPF  T  Q++ + +I  D+ Q  +M R+LQG
Sbjct: 228 WRKLQQRRIANGAQILYDNDHLRDFIQTIPFELTAGQKAVVNEICADLRQPFQMNRLLQG 287

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA+I + A ++AG Q  +M P  ILA QHY  I  + + T   V ++TG+  
Sbjct: 288 DVGSGKTVVAMICLVATIDAGFQGAMMVPTEILADQHYASISGFFEKTDYKVALLTGSTK 347

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+ L  + +G   ++IGTHAL QD +++  L +V++DEQHRFGV QR KL  K   
Sbjct: 348 TKARREILADLVNGDIDLLIGTHALIQDDVKFADLGMVVIDEQHRFGVNQRSKLVAKGEF 407

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P+VL MTATPIPRTL +T +GD+D+SK+ E P+GR PI+T  +  NR  +V E++ + 
Sbjct: 408 KAPNVLYMTATPIPRTLEITMMGDMDVSKLKEMPSGRIPIETSWVRHNRQAQVDEQIWLE 467

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y ICP I E +    ++    + +    F    S+ ++HG+MS  +K+ VM++
Sbjct: 468 VRKGRQVYIICPLIGESEALEAQNAEHIYETYVAQFGSQFSVGLLHGQMSADEKDQVMEA 527

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN   ++L++TTVIEVG++V +A+ ++I +A+ FGLAQLHQLRGRVGRGE  S C+L+ 
Sbjct: 528 FKNNDIQILVSTTVIEVGVNVPNATYMVILDADRFGLAQLHQLRGRVGRGEYASYCVLVA 587

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            P  + N   R++++  + DGF ++++DL+ R  G+  G +QSG+P+F +A P     +L
Sbjct: 588 DPR-TDNGKQRMNIMVESTDGFYLSQQDLELRGAGDYFGTRQSGLPEFKVADPIEDGVIL 646

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
           E+AR+DA   +   P       +   +  +L Q 
Sbjct: 647 EVAREDAIQFI---PYFEGHLNEFTELAEWLDQQ 677


>gi|298480238|ref|ZP_06998436.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D22]
 gi|298273519|gb|EFI15082.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D22]
          Length = 698

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 235/689 (34%), Positives = 371/689 (53%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +           DL++Y P  +IDR     I EI
Sbjct: 1   MFDLATRDIKFISGVGPQKAAVLNKELE-----IYSLHDLIYYFPYKYIDRSRIYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +    ++R      +DGTG + L++F +  + +   +    + 
Sbjct: 56  DGNMPYIQLKGEILGFETIGEGRQRRLTAHFSDGTGVVDLVWF-QGIKYILGKYKLHEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            + GK      RI + HP         ++   ++  Y+         L+    +K++   
Sbjct: 115 IIFGKPTVFNGRINVAHPDVDKPEDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + ++   LPE +   LL +     + EA   IH P      +    A+ RL ++EL   Q
Sbjct: 175 IQQIQEPLPETLSSKLLAEHHLMPLTEALRNIHFPTNP---DVLRRAQYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + K+  G      G +      +N+PF  T +Q+  +K+I  D+    +M 
Sbjct: 232 LNILRYAKDRQKRYRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G   I+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L 
Sbjct: 352 TGSIKGKRREAILTGLLTGDVKILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   
Sbjct: 412 SKNVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K+  
Sbjct: 472 VRKQIEEGRQVYIVYPLIKESEKIDLKNLEEGYQHILEEFPKCTVCKVHGKMKPAEKDEQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MQLFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+ +  L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ I+ QDP   +   + +
Sbjct: 652 GQLLQYVRAIAESIVEQDPAAQNPENEIL 680


>gi|237719141|ref|ZP_04549622.1| ATP-dependent DNA helicase recG [Bacteroides sp. 2_2_4]
 gi|229451520|gb|EEO57311.1| ATP-dependent DNA helicase recG [Bacteroides sp. 2_2_4]
          Length = 698

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 236/689 (34%), Positives = 371/689 (53%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +           DL++Y P  +IDR     I EI
Sbjct: 1   MFDLATRDIKFISGVGPQKAAVLNKELE-----IYSLHDLIYYFPYKYIDRSRIYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +    ++R      +DGTG + L++F +  + +   +    + 
Sbjct: 56  DGNMPYIQLKGEILGFETIGEGRQRRLTAHFSDGTGVVDLVWF-QGIKYILGKYKLHEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            + GK      RI + HP         ++   ++  Y+         L+    +K++   
Sbjct: 115 IIFGKPTVFNGRINVAHPDVDKPEDLKLSSVGLQPYYNTTEKMKRSFLNSHAIEKMMATV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + ++   LPE +   LL +     + EA   IH P      +    A+ RL ++EL   Q
Sbjct: 175 IQQIQEPLPETLSSKLLAEHHLMPLTEALRNIHFPTNP---DVLRRAQYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + K+  G      G +      +N+PF  T +Q+  +K+I  D+    +M 
Sbjct: 232 LNILRYAKDRQKRYRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G   I+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L 
Sbjct: 352 TGSIKGKRREAILTGLLTGDVKILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   
Sbjct: 412 SKNVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K+  
Sbjct: 472 VRKQIEEGRQVYIVYPLIKESEKIDLKNLEEGYQHVLEEFPKCTVCKVHGKMKPAEKDEQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MQLFVSGKAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+ +  L++++  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTNYKLTEDTRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ I+ QDP   S   + +
Sbjct: 652 GQLLQYVRAIAESIVEQDPAAQSPENEIL 680


>gi|222153644|ref|YP_002562821.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J]
 gi|222114457|emb|CAR43286.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J]
          Length = 671

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 235/689 (34%), Positives = 379/689 (55%), Gaps = 25/689 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P+S  +G+G K +    K+            DLL Y+P  + D      + ++ +  
Sbjct: 3   LQSPISELKGLGPKSAEKFQKL------GIFTIEDLLLYYPFRYEDF-KSKSVFDLQDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              +TG +   ++ Q    +  ++      GE+ +   +     L +     ++I V GK
Sbjct: 56  KAVVTGMVVTPATVQYYGFKRNRLSFKVKQGELVIAVNFFNQPYLADKVTLNQEIAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             + K  +  +       +        ++ VY +  G+S     K I  A     L  +P
Sbjct: 116 WDQKKASLTGMKLLITVEDD-------LQPVYHVAQGISQSSLLKAIKSAFDTGLLETIP 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E I + LLQ         A   +H P   +D+     A  R+ ++EL   Q+ L ++++ 
Sbjct: 169 ENIPQQLLQNYRLMPRQAAIKAMHFPNDLRDY---KQALRRIKFEELFYFQMNLQVLKQA 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K +  G+ +     +  + ++++PF  T +Q  +++DIL+DMS    M R+LQGDVGSG
Sbjct: 226 NKAETAGLKMAYSKDLLSEKIKSLPFPLTNAQNRSLQDILKDMSSGQHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT++A +AM AA  AG Q+ +M P  ILA+QHY  +++     ++ + I+   M  A +R
Sbjct: 286 KTVIASLAMYAAYTAGYQSALMVPTEILAEQHYTSLQELF--PELSIAILKSGMKVAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
            AL  IA G   +I+GTHAL QD++QY++L LVI DEQHRFGV+QR    +K   P VL+
Sbjct: 344 AALSAIAEGNVDMIVGTHALIQDAVQYHQLGLVITDEQHRFGVKQRRIFREKGENPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++D V+  +   + +G + 
Sbjct: 404 MTATPIPRTLAITAYGEMDVSIIDELPAGRKPILTRWVKHQQLDTVLYWMTQEIEKGAQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ V     L  +F   + IA++HG+M + +K+++M +FK G   
Sbjct: 464 YVISPLIEESEALDLKNAVALEQELKAYFKEKARIALMHGKMKNEEKDTIMQTFKKGQID 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG + S  IL+ +P  ++ 
Sbjct: 524 ILVSTTVIEVGVNVPNATIMLIMDADRFGLSQLHQLRGRVGRGHKQSYAILVANPK-TET 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++ NT DGF++AE DLK R  GEI G +QSG+P+F  A       +LE AR+ A
Sbjct: 583 GKERMKIMTNTNDGFILAEADLKMRGSGEIFGTRQSGIPEFKTADLVEDYPILEEARRVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNE 692
             I  Q+      R   ++  L  +Q  +
Sbjct: 643 TLITGQENWQDDSRWACVQKHLRDHQNFD 671


>gi|86130104|ref|ZP_01048704.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85818779|gb|EAQ39938.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 700

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 238/696 (34%), Positives = 365/696 (52%), Gaps = 27/696 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M P+F   L  P+   +GVG   +  L   +         F DL+   P  +ID+    K
Sbjct: 1   MNPTF---LQTPIDYLKGVGPNRADLLRSEL-----GIHTFQDLMHLFPHRYIDKTRYYK 52

Query: 61  ISEI-SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           ISE+      V I G  +     + + RR       D  G++ L++F R  + +K     
Sbjct: 53  ISELERSNAEVQIIGKFTSMKMIEGKGRR-LVATFRDDGGQMELVWF-RGHKWIKEGIKM 110

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPT-----GLSVDLFKK 173
                + GK      +  M HP     +  + +    ++ VY         G++  +   
Sbjct: 111 NTPYVIFGKCNYYNGKFSMPHPEMELLSEHEKSIRSAMQPVYPSTEKLSNRGITNKVVNG 170

Query: 174 IIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           ++          L E + K L+ +       EA   +H P+     E  + A+ RL ++E
Sbjct: 171 VMQTLFMEAKNHLFESLSKPLVTELKLMPKREALLNVHFPQSQ---EHLARAQYRLKFEE 227

Query: 233 LLAGQIALLLMRKQFKKEIG-IPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQ 290
               Q+ L       K +I   P    G I  +    ++PF  T +Q+  +K+I  D+  
Sbjct: 228 FFYIQLQLAFKNVNHKTKIKGYPFEKVGPIFTEFYNDHLPFELTGAQKRVLKEIRHDLGT 287

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
             +M R+LQGDVGSGKT+VAL++M  A++ G QA +MAP  ILA QHY+ + +  +    
Sbjct: 288 NAQMNRLLQGDVGSGKTIVALMSMLMALDNGFQACLMAPTAILAVQHYQGLLELCKELNT 347

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            + ++ G+     R+   E++ +G+  I+IGTHAL +D +++  L L ++DEQHRFGV+Q
Sbjct: 348 SISLLQGSTKTLERKIIHEQLENGELDILIGTHALLEDKVKFKNLGLAVIDEQHRFGVKQ 407

Query: 411 RLKLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           R KL  K   P HVL+MTATPIPRTL +T  GD+D+S I E P GRK IKTV        
Sbjct: 408 RSKLWHKNEYPPHVLVMTATPIPRTLAMTVYGDLDVSVIDELPPGRKAIKTVHRYDANRL 467

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMS 526
           +V + ++  ++ G++ Y + P I+E +  +++ +++ + S+   F      I+I+HG+M 
Sbjct: 468 KVFKFIRDEIALGRQVYIVYPLIQESEAMDYKDLMDGYESISREFPMPEYQISIVHGKMK 527

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DKE  M+ F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG
Sbjct: 528 PDDKEIEMNRFIKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRG 587

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            E S CIL+    LS +S  RL  +  T DGF IAE DLK R  G+I G +QSG     I
Sbjct: 588 AEQSYCILMTSHKLSSDSKVRLETMTRTNDGFEIAEVDLKLRGPGDITGTQQSGALNLKI 647

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           A     + +L++AR  A  ++  DP       Q IR
Sbjct: 648 ADIIRDNDILKVARSYAWQLVKDDPKFEKEENQIIR 683


>gi|288942236|ref|YP_003444476.1| ATP-dependent DNA helicase RecG [Allochromatium vinosum DSM 180]
 gi|288897608|gb|ADC63444.1| ATP-dependent DNA helicase RecG [Allochromatium vinosum DSM 180]
          Length = 717

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 243/678 (35%), Positives = 368/678 (54%), Gaps = 20/678 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P  T   VG K +  L ++            DLLF+ P  + DR     ++EI       
Sbjct: 32  PARTLDRVGPKIAERLERL------GIRTVQDLLFHLPLRYQDRTRLTPLTEIEVGVETW 85

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I + S   L +RR  K+ + D  G   LL F+  +         G ++   G++++
Sbjct: 86  VEGEILE-SGIGLGRRRSLKVWVGDALGAGLLLRFFYFSPQQAAALKPGERVRCYGEVRQ 144

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + MVHP Y    ++        +  +Y    GL    ++ +  +AL+ +      E
Sbjct: 145 GPQSLEMVHPEYRLLRAEADEPIAACLTPIYPSTEGLQQTSWRGLTDQALALMERTAPAE 204

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +  ++L     P++ EA   +H P          E   PA  RLA++EL+A Q++L  M
Sbjct: 205 LLPPEILDPLGLPTLTEALAFLHRPPVGTSLQDLTEGRHPAFARLAFEELVAHQVSLRRM 264

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + ++     +  +G + +++  ++PF  T SQE  + +I  D++Q   M R+LQGDVG
Sbjct: 265 RLEQRRVSAPVLGGDGGLRERLRASLPFRLTASQERVVAEIAADLAQSRPMQRLLQGDVG 324

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT+VA +A   A+E+  QA +MAP  +LA+QH+  +  +     +    + G      
Sbjct: 325 AGKTVVAALAALQALESDCQAALMAPTELLAEQHHRSLSGWLGALGLEPVWLAGRHKGRE 384

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R + L  IA G A I++GTHAL QD + +  L LVI+DEQHRFGV QRLKL +K      
Sbjct: 385 RDERLAAIASGAAPIVVGTHALLQDDVAFQDLGLVIIDEQHRFGVHQRLKLREKGGGEDG 444

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPR+L +T   D+D+S I   P GR PI T  +P  R DEVIER++   
Sbjct: 445 APHQLIMTATPIPRSLAMTLYADLDLSVIDGLPPGRTPIVTRAVPDTRRDEVIERVRQAC 504

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
             G++AYW+C  IEE +    ++  +    L        + ++HGR+   ++++VM +F 
Sbjct: 505 LAGRQAYWVCTLIEESEVLECQAAEDTARQLSACLEGLRVGLVHGRLKSQERDAVMAAFA 564

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH 
Sbjct: 565 SGALDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVESHCLLLYHA 624

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS  +  RL +++++  GF IAE DL  R  GE+LG +Q+G  +F IA P     L+  
Sbjct: 625 PLSAIARERLGIIRDSTSGFEIAERDLAIRGAGEVLGTRQTGSIQFRIADPLRDQPLIAE 684

Query: 659 ARKDAKHILTQDPDLTSV 676
           A++ A  +L   P+L + 
Sbjct: 685 AQRAADRLLVGYPELVTP 702


>gi|289432949|ref|YP_003462822.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. GT]
 gi|288946669|gb|ADC74366.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. GT]
          Length = 818

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 225/701 (32%), Positives = 368/701 (52%), Gaps = 37/701 (5%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L   +S  +G+    +    K+            DLL+Y P+  +D     KIS++ 
Sbjct: 117 LPALDGDVSLVKGISAATAPKFHKL------GVNTVRDLLYYFPNRHLDYSRLKKISQLE 170

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
                TI   + Q     +  RR  + +L D TG +  ++F      +        ++ +
Sbjct: 171 AGPEQTIIANVWQSKVNFMGGRRSTEAVLGDDTGNMRAVWFNN--PYMVRNLKPNARVVL 228

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RL 182
           +G++   + R +   P +     +   ++   +  VY L  GL     ++++   +    
Sbjct: 229 SGRVSIFQGRPVFESPEWEELPDEADLIHTGRLVPVYPLTAGLHQRSLRRLMKNFIDISS 288

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
           P + +++  + L++     ++EA    H P    D E  + AR RLA+DEL   Q+ +L 
Sbjct: 289 PNISDFMPAETLKRTRLLPLSEAIRQAHFP---DDEELKNAARNRLAFDELFILQLGVLA 345

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +K++ ++ G  +NV      + +  +PF  T +Q   + DI  D+S+   M R+LQG+V
Sbjct: 346 KKKRWHEQAGRALNVNIPDIDRFVSKLPFKLTDAQTRCLADIKADISKGVPMSRLLQGEV 405

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-------------- 348
           GSGKT+VA+I++  A   G Q   MAP  ILA+QH++ + +   +               
Sbjct: 406 GSGKTIVAVISLFTAAANGLQGAFMAPTEILAEQHFKSVTRLFASIARVSTLLDGIYTFE 465

Query: 349 -----QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                 + V ++  +M  + +    E+I  G+  I IGTHAL Q  I++  L L ++DEQ
Sbjct: 466 GLLDRPLKVALLISDMKGSQKDILKEKIKKGEVDIAIGTHALIQKEIRFKSLGLAVIDEQ 525

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           HRFGV+QR  L  K   PH+L+MTATPIPRTL LT  GD+D+S I E P GR+ IKT  +
Sbjct: 526 HRFGVEQRSALRSKGLNPHILIMTATPIPRTLALTLYGDLDLSVIDELPPGRQSIKTRWL 585

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAII 521
              + +     ++  + EG++A+ ICP +EE +    ++    + +L       S +A++
Sbjct: 586 KPEQRNSAYTFIRKQIQEGRQAFIICPLVEESEVIQAKAATAEYETLSREVFPESRVALL 645

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HGRM+  +KE++M  F  G   +L++T VIEVGID+ +A+++++E+A+ FGL+QLHQ RG
Sbjct: 646 HGRMNASEKETIMRHFSEGEMDILVSTPVIEVGIDIPNAAVMLVESADRFGLSQLHQFRG 705

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           RVGRG E S C+ L   P S     RLS++++T+DGF +AEEDL+ R  GE  G +QSG+
Sbjct: 706 RVGRGTEQSYCMFLAENP-SLLGQERLSIIESTQDGFKLAEEDLRLRGPGEFFGTRQSGL 764

Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           P   +A       LLE ARK+A  +   DP+L+      + 
Sbjct: 765 PNLRMASIS-DVGLLEQARKEATRLFESDPELSLPENAPLE 804


>gi|325979039|ref|YP_004288755.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178967|emb|CBZ49011.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 671

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 244/684 (35%), Positives = 377/684 (55%), Gaps = 29/684 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + +   +G+G K +    K+      +     DLL Y+P  + D     ++SE+++  
Sbjct: 3   LQSSIVELKGIGAKSAEKFYKL------DIYTIEDLLLYYPFRYEDF-KSKRVSELADGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      +  G   I + FF +    L +    G  I + 
Sbjct: 56  KAVITGTVVTPANVQYYGYKRNRLSFKIKQGEAVIAISFFNQ--PYLADKVELGSDIAIF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-- 184
           GK   LK+ +  +    I    +D     ++ VY +  G+S +   K I  A        
Sbjct: 114 GKWDALKSAVTGMK---ILAQVEDD----MQPVYRVAQGISQNALVKAIKSAFEIGAQNW 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE + + LL K      A+A   +H P   KD      A  R+ ++EL   Q+ L  ++
Sbjct: 167 LPENLPQLLLDKYRLLGRAQATAAMHFP---KDLAEYKQALRRIKFEELFYFQMNLQALK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
              K E   + I  + +     +  +PF+ T  Q  ++ DIL DM     M R+LQGDVG
Sbjct: 224 ADNKSEANGLAIAYDEQKVADKIAALPFTLTGGQRRSLDDILADMRSGGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH+E + +      + + I+T  M  A 
Sbjct: 284 SGKTVVASLAMYATYTAGFQSALMVPTEILAEQHFESLTQLF--PDLSIAILTSGMKTAA 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++ AL  IA G   +I+GTHAL QD++ Y++L LVI DEQHRFGV QR    +K   P V
Sbjct: 342 KQAALSAIADGSVDMIVGTHALIQDAVTYHRLGLVITDEQHRFGVNQRRVFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   +++ V++ +K  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLEVVLDWVKKELQKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
           +AY I P IEE +  + ++ V     L  +F  S  +A++HGRM + +KE++M  FK   
Sbjct: 462 QAYVISPLIEESESLDLKNAVALHEELSAYFADSATVALMHGRMKNDEKEAIMQDFKAQK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG++ S  IL+ +P  +
Sbjct: 522 SQVLVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGDKQSYAILVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T DGF++AE DLK R  GEI G +QSG+P+F +A      ++LE AR+
Sbjct: 581 QTGKERMKIMTETTDGFVLAEADLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARR 640

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
            A  I+++     + + Q +   L
Sbjct: 641 VASQIVSEKDWQNNPQWQIVSQNL 664


>gi|294791988|ref|ZP_06757136.1| ATP-dependent DNA helicase RecG [Veillonella sp. 6_1_27]
 gi|294457218|gb|EFG25580.1| ATP-dependent DNA helicase RecG [Veillonella sp. 6_1_27]
          Length = 680

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 231/660 (35%), Positives = 372/660 (56%), Gaps = 15/660 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+T +G+G      L K+        T    LL Y P ++ DR    +I ++       +
Sbjct: 5   LTTIKGIGPGREKQLHKL------GITNVTSLLTYFPRTYEDRRTIYRIGDLKSGMTGGV 58

Query: 73  TGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +      + + +    ++++ DGTG + ++ F +     KN + +G++I   GK + 
Sbjct: 59  VGTVIAVQEKRPRPQLSILEVVIADGTGPLKIVLFNQG--YKKNFYKKGQRIYAYGKAEF 116

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
               + M  P              I  +Y+L  G+S  + +  +    +    LPE +  
Sbjct: 117 QYGTMQMNTPQMENLGDSGEPDRGIVPIYALADGVSQFVVRSSVRNWFAANHELPEILPV 176

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           ++ +   + S  +AF ++H P  ++ +E     R +LAY+EL   Q  L L+R + +   
Sbjct: 177 EVRESHHYMSRYDAFKMMHFPDSSEHYEEA---RYQLAYEELFVMQAGLALLRSKEQCHR 233

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G  +   G++  + + N+PFS T  Q+ A++DI  DM  +  M R+LQGDVGSGKT+VA 
Sbjct: 234 GPKMGPNGELMAQCIENLPFSLTGDQQRALEDIRIDMEDERPMQRLLQGDVGSGKTIVAT 293

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +++  A+E G Q  +MAP  ILA QHYE I+    N  I +E++TG+  +  +    E +
Sbjct: 294 LSLLKAIENGYQGALMAPTEILAAQHYEGIRTVCANLGITIELLTGSSTKKEKEYIYEGL 353

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A G+  +IIGTHAL Q+ + ++ L LVI+DEQHRFGV QR +L QK T PHVL+MTATPI
Sbjct: 354 ADGRIQMIIGTHALIQEGVNFHNLGLVIIDEQHRFGVDQRARLQQKGTYPHVLIMTATPI 413

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRT+ L+  GD+ +S I E P GRKP+KT  +  +  + +       ++EG++ Y +CP 
Sbjct: 414 PRTMTLSVYGDLAVSLIKEMPPGRKPVKTYAVDSSYKERLRTFFGKEMAEGRQVYVVCPL 473

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +EE ++ + ++  E +  L E+F  +  + ++HGRM   +K+ VM++F  G   LL++TT
Sbjct: 474 VEESEKLDLQAAEELYLELKEYFYKAYEVGLVHGRMKPSEKDEVMNAFHRGEISLLVSTT 533

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVG++V +A+I+ +E AE FGL+QLHQLRGRVGRG   S CIL+     +  S  RL 
Sbjct: 534 VIEVGVNVPNATIMCVEGAERFGLSQLHQLRGRVGRGAHQSYCILVSDSK-NDVSQERLK 592

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           +++  +DGF +AE+DL  R  G++ G+ QSG+P   +A       +L  ARKD    +++
Sbjct: 593 LMEQIQDGFELAEQDLLLRGSGQLFGLAQSGLPDLRVANIIKDIEILVKARKDVLDFVSR 652


>gi|166031900|ref|ZP_02234729.1| hypothetical protein DORFOR_01601 [Dorea formicigenerans ATCC
           27755]
 gi|166028353|gb|EDR47110.1| hypothetical protein DORFOR_01601 [Dorea formicigenerans ATCC
           27755]
          Length = 676

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 234/671 (34%), Positives = 373/671 (55%), Gaps = 22/671 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
            + +   +GVG+K     +K+            DLL Y+P ++        I+E+ + R 
Sbjct: 4   QSKIHEIKGVGEKTEKLFAKL------GIYTVGDLLRYYPRNYDVYEEAVPIAEVEDGRT 57

Query: 70  VTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           VT+TG I      Q+   R  ++    + D TG I  ++F  +   LKN    G +IT+ 
Sbjct: 58  VTVTGMI--FGRVQVGGSRNLQVTTIYVKDLTGTIKAVWF--RMPFLKNTLAGGGQITLR 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           G+    ++ +++ HP   + + + +     ++ +Y+L  GL+ +   K + + +  L + 
Sbjct: 114 GRAVNRRDGLVLEHPEIFYPSEKYEEKLHTLQPIYNLTAGLTNNAISKAVKQVVESLDLT 173

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E + +++           A   IH P   +D E    ARERL ++E L   +A+  ++ 
Sbjct: 174 KEHLPEEIRLHYQLAEYNYAIRGIHFP---EDKEVFYHARERLVFEEFLQFILAIRKLKD 230

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
              +     +       ++  + +PF  T +Q++  ++I QDM+ ++ M R++QGDVGSG
Sbjct: 231 SNSRMDNEYVIPLDLRTEEFQKALPFELTGAQQNVWREIQQDMASEHAMSRLVQGDVGSG 290

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAH 363
           KT+VA++A+      G QA +MAP  +LA+QHYE I    +  N  I V ++TG+M    
Sbjct: 291 KTIVAVLALLNTALKGYQAAMMAPTEVLARQHYESITSLFEAYNIPIKVVLLTGSMTAKE 350

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R+A +RI  G A II+GTHAL QD++ Y  L LV+ DEQHRFGV+QR    +K   PHV
Sbjct: 351 KRRAYDRIECGLAKIIVGTHALIQDAVYYDNLALVVTDEQHRFGVKQRESFAKKGGVPHV 410

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++  +        +K  ++EG+
Sbjct: 411 LVMSATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVDTSYRQTAYTFMKKQIAEGR 470

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGT 541
           + Y ICP +EE +     +V +    L E   + I +  +HG+M    K+ +M+ F    
Sbjct: 471 QCYIICPMVEESEAMEAENVTDYSRMLQEEMGTQIVVDHLHGKMKQAAKDEIMERFGRNE 530

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVGIDV +A++++IENAE FGLAQLHQLRGRVGRG+  S CI +     +
Sbjct: 531 IQILVSTTVIEVGIDVPNATVMMIENAERFGLAQLHQLRGRVGRGKYQSYCIFMTGSK-A 589

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           K +  RL +L  T DGF IA EDLK R  G++ GI+QSG+  F +       ++L+ A +
Sbjct: 590 KETKKRLEILNKTNDGFKIASEDLKLRGPGDLFGIRQSGLMDFGLGDIYQDAAILQKANE 649

Query: 662 DAKHILTQDPD 672
            A+ +L  +P+
Sbjct: 650 AAEWLLKNNPE 660


>gi|229013038|ref|ZP_04170203.1| ATP-dependent DNA helicase recG [Bacillus mycoides DSM 2048]
 gi|228748292|gb|EEL98152.1| ATP-dependent DNA helicase recG [Bacillus mycoides DSM 2048]
          Length = 682

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 227/681 (33%), Positives = 371/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       +    V    +E VYS+   L+V   ++ + +A       + E 
Sbjct: 119 DQHRQTIAVS----ELNFGPVVRQQEVEPVYSVKGKLTVKQMRRFVAQAFKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +    S  EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLSRYKLLSRYEALRGLHFPVGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +     Q+    +PF  T +Q   + +I++DM    RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEISLVELQEFTDALPFPLTGAQRRVVDEIMKDMISPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IA+ AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR+ 
Sbjct: 292 VVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLTETFSHFGMKVELLTSSVKGARRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L R+  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LSRLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAI 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  S+R  L 
Sbjct: 651 LVDSEAFWHNDQYASLRTYLD 671


>gi|260909993|ref|ZP_05916680.1| DNA helicase RecG [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635943|gb|EEX53946.1| DNA helicase RecG [Prevotella sp. oral taxon 472 str. F0295]
          Length = 699

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 237/686 (34%), Positives = 375/686 (54%), Gaps = 22/686 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +    GVG +    LSK +     N   F DLL Y+P  ++DR    +I+++  + 
Sbjct: 5   LDQDIMYLPGVGPRKKEILSKEL-----NIKTFGDLLEYYPYKYVDRTQIFRIAQLQGDM 59

Query: 69  -IVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             V + G+I     F +  +++       DG     L++F + T+ + N +  G +  V 
Sbjct: 60  PYVQVKGHILSFEEFDMGPRKKRLVAHFTDGWNVADLVWF-QGTKYVLNTYKVGVEYIVF 118

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSR 181
           GK      R    HP         +    ++  Y        +G++    +K+    L +
Sbjct: 119 GKPSVYGGRYQFAHPDIDEATELKLAEMGMQPHYGTTDRMKKSGITSRAMEKLTKGLLEQ 178

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           +   L E +   +       S  EA   +H P    + +     + RL ++EL   Q+ +
Sbjct: 179 MQAPLAETLPPFITNALHLVSRDEAMRGVHYPHNTDELQRA---QVRLKFEELFYVQLNI 235

Query: 241 L-LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L       +K  G   +  G+       N +PF  T +Q+  + +I  DM    +M R+L
Sbjct: 236 LRYANFHRRKYRGYHFSKIGQYFNDFYHNNLPFELTCAQKRVMHEIRNDMDSGRQMNRLL 295

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVAL++M  AV+ G QA +MAP  ILA+QH   I++  Q T +  E++TG 
Sbjct: 296 QGDVGSGKTLVALMSMLIAVDNGFQACMMAPTEILAEQHLATIQQMLQGTGVTAELLTGI 355

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QK 417
           +    R   L+R+  GQ HI++GTHAL +D++Q+  L L +VDEQHRFGV+QR KL  + 
Sbjct: 356 VKGKRRADVLQRLVSGQLHILVGTHALLEDTVQFAHLGLAVVDEQHRFGVKQRAKLWGKN 415

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N+   +   ++ 
Sbjct: 416 DNPPHVLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTLHKYDNQTTSLYAGIRQ 475

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            ++ G++ Y + P IEE ++++ +++ E + +L + F    ++ IHGRM   +KE+ M  
Sbjct: 476 QVNLGRQVYIVYPLIEESEKTDLKNLEEGYKALTDIFPEYKMSKIHGRMKSKEKEAEMAR 535

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ 
Sbjct: 536 FASGETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVT 595

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSL 655
           +  LS  +  R+ ++  T DGF IAE DLK R  G++ G +QSGM     IA      +L
Sbjct: 596 NRALSAETRKRIDIMCETNDGFRIAEADLKLRGPGDLEGTQQSGMAFDLKIANIARDGAL 655

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSI 681
           +++AR +A+ I+ +DP+        +
Sbjct: 656 VQMARDEAQKIIERDPNCNLPEHAML 681


>gi|229031485|ref|ZP_04187485.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1271]
 gi|228729774|gb|EEL80754.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1271]
          Length = 682

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 224/681 (32%), Positives = 369/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H         +E VYS+   L+V   ++ I +A       + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVARQQEVEPVYSVKGKLTVKQMRRFIAQAFKEYGKSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLSRYKLLPRYEALRALHFPAGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +     Q+ +  +PF  T +Q   + +I++DM+   RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEIPSAELQEFIDALPFPLTGAQSRVVDEIMKDMTSPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I + AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++    RR+ 
Sbjct: 292 VVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVRRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAL 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  S+R  L 
Sbjct: 651 LVDSEAFWHNDQYASLRTYLD 671


>gi|322390145|ref|ZP_08063679.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 903]
 gi|321143176|gb|EFX38620.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 903]
          Length = 671

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 238/688 (34%), Positives = 383/688 (55%), Gaps = 31/688 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PLS   GVG K +    K+            DLL Y P  + D   R  + E+ +  
Sbjct: 3   LHQPLSVLPGVGPKSAEKFKKL------GIETLEDLLLYFPFRYEDFKTR-NVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              I+G ++  ++ Q    KR   +  +  G   I + FF +    L +     + + + 
Sbjct: 56  KAVISGLVATPANVQYYGYKRNRLRFSIKQGDQVIAVNFFNQ--PYLADKIEVQQTVAIF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPV 184
           GK  K K  +  +    +    +D     ++ VY +  G+S +   K+I  A  +    +
Sbjct: 114 GKWDKAKGSLTGMK---LLAQVEDD----LQPVYRVTQGVSQNSLVKLIKIAFDQGLDQL 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + L ++    S ++A   +H P   KD      A  R+ ++ELL  Q+ L +++
Sbjct: 167 LEENVPQILRERYQLMSRSQAVQAMHFP---KDLAEYKQALRRVKFEELLFFQLQLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++       I +  + +   +  + +PF  T++QE+++ +IL DM+    M R+LQGDVG
Sbjct: 224 EENHDASQGISLAWDPEKLAERKKQLPFELTQAQENSLNEILTDMASPYHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM AA+ AG QA +M P  ILA+QH E ++    +    + ++TG +  A 
Sbjct: 284 SGKTVVAGLAMYAALSAGKQAALMVPTEILAEQHKESLQNLFPDLP--IALLTGGLKAAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R+ LE IA G A +I+GTHAL Q+ + Y  L LVI+DEQHRFGV QR  L +K   P V
Sbjct: 342 KREVLEEIASGTAQLIVGTHALIQEGVHYQDLGLVIIDEQHRFGVSQRRILREKGQNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRK I T  +   +++ V++ L   L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKEIITRWVKHEQLEVVLDWLVKELGKGS 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY+I P IEE +  + ++ +     L   F   + ++++HG+M   +K+++M +FK   
Sbjct: 462 QAYFISPLIEESEALDLKNALALQEELEAFFGQRARVSLLHGKMKSEEKDAIMQAFKEHQ 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  IL+ +P  +
Sbjct: 522 VDVLVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGNKQSYAILVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE  RK
Sbjct: 581 DSGKQRMKIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADLVEDYPILEEGRK 640

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQ 689
            A  I+   PD        + + LYL +
Sbjct: 641 VASQIVAT-PDWREHPDWHL-LSLYLEK 666


>gi|241759124|ref|ZP_04757233.1| ATP-dependent DNA helicase RecG [Neisseria flavescens SK114]
 gi|241320620|gb|EER56890.1| ATP-dependent DNA helicase RecG [Neisseria flavescens SK114]
          Length = 729

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 240/666 (36%), Positives = 362/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 66  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 118

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 119 FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQMAAGKRIRAVGEIKHGFYGDEMIHPKI 178

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                       +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 179 R-DAEGSGLAESLTPVYPTVNGLNQSTLRRIIQTALDVTP-LHDTLPDALLGRLKLPHLA 236

Query: 204 EAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +      S    PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 237 ESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAAALGGDG 296

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q +   +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA +++  A+E
Sbjct: 297 TLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSVLTAIE 356

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G QA +MAP  ILA+QH+   K++ +   + V  ++G+  +  + +A  ++A G   I 
Sbjct: 357 SGAQAAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGTVKIA 416

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D +++  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 417 VGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRTLAMSF 476

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE +   
Sbjct: 477 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEESETLQ 536

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+DV 
Sbjct: 537 LQTATETLEQLQTALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVP 596

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+ E  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+    DGF
Sbjct: 597 NAALMVIEHVERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGF 656

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A  E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 657 EIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPMLIEQNPEI--VEA 714

Query: 679 QSIRIL 684
              R L
Sbjct: 715 HLARWL 720


>gi|148994014|ref|ZP_01823370.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP9-BS68]
 gi|168488586|ref|ZP_02712785.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP195]
 gi|147927481|gb|EDK78509.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP9-BS68]
 gi|183572842|gb|EDT93370.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP195]
 gi|332072525|gb|EGI83008.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA17570]
          Length = 671

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 239/687 (34%), Positives = 385/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L+ IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLQTIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRK I T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKSIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFACKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEAWQEDPEWRMIALHLEKKEH 669


>gi|54294931|ref|YP_127346.1| ATP-dependent DNA helicase RecG [Legionella pneumophila str. Lens]
 gi|53754763|emb|CAH16250.1| ATP-dependent DNA helicase RecG [Legionella pneumophila str. Lens]
          Length = 690

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 249/669 (37%), Positives = 374/669 (55%), Gaps = 24/669 (3%)

Query: 14  STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73
               GVG   +  L+K             DLLF+ P  + DR     I ++       I 
Sbjct: 7   EYLTGVGPTIAAKLAK------CGIFTIQDLLFHLPYKYQDRTRITPIQDLRSNEWCVIA 60

Query: 74  GYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
           G++ + +  +  KR      + D TG + L FF+   + +         I   G+++   
Sbjct: 61  GHVCK-TEIKYGKRMMLNCYVEDKTGVVKLRFFHFNKQQI-QALNNSAMIRAFGEVRGFN 118

Query: 134 NRIIMVHPHYIFHNSQDV--NFPLIEAVYSLPTGLSVDLFKKIIVEALSR----LPVLPE 187
           N++ M+HP Y   N +        +  +Y    GL+    ++++  AL +    L  L E
Sbjct: 119 NQLEMIHPEYQLINQESDFHVEETLTPIYPSTQGLTQTRLRQLVKIALEQSEHELHQL-E 177

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
           W+ +  LQ+ +F  + EA  ++HNP              PA +RL +DELLA Q+++   
Sbjct: 178 WMSEKQLQENNFYDLGEAIKLLHNPPPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFA 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+   K     I  +  I ++ + ++PFS T +Q+   K+I  D++Q   MLR+LQGDVG
Sbjct: 238 RQSRSKLQAPAIFFDNAIHKRFIESLPFSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT++A +A   A+  G Q   MAP  +L++QH   + K+ +   I V  ++G M    
Sbjct: 298 AGKTIIAALAALQAISQGFQVAFMAPTDLLSEQHTNSLGKWLEPIGINVLRLSGKMKTTE 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R+ AL  +      +I+GTHALFQ+ +++ +L LVI+DEQHRFGV+QRL L QK      
Sbjct: 358 RKNALAALQDNSCKLIVGTHALFQEQVEFARLGLVIIDEQHRFGVEQRLLLQQKGQLNQL 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH LLMTATPIPRTL ++    +DIS I E P GR PI T ++  ++ + +IERL+  +
Sbjct: 418 IPHQLLMTATPIPRTLSMSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAI 477

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
           S GK+AYW+C  IEE ++    +  +    L E    + + ++HGRM   +KE+ M +FK
Sbjct: 478 SNGKQAYWVCTLIEESEKLQCMAATDTSKKLQEQLSFARVGLVHGRMKAFEKEATMAAFK 537

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+LLY  
Sbjct: 538 QGEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQS 597

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL ++++T DGFLI+E+DL+ R  GEILG KQ+G  +F IA  +   +L  I
Sbjct: 598 PLSQQGAERLKIMRSTTDGFLISEKDLELRGSGEILGTKQTGFRQFKIANLQRDKTLFTI 657

Query: 659 ARKDAKHIL 667
            R  AK ++
Sbjct: 658 LRPIAKQLV 666


>gi|89891409|ref|ZP_01202915.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium BBFL7]
 gi|89516440|gb|EAS19101.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium BBFL7]
          Length = 701

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 235/702 (33%), Positives = 365/702 (51%), Gaps = 23/702 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P+    GVG   +  L   +       + + DL    P+ +ID+    KI+E+  
Sbjct: 4   NFLHTPIDYLNGVGPARAKLLKAEL-----GISTYGDLANLFPNRYIDKTKYYKINELVP 58

Query: 67  ER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           +   V I G ++   +    +         DGTG + L++F +  +  K+         V
Sbjct: 59  DSAHVQIVGKVTHLKTMGDGRASRLIATFIDGTGSMELVWF-KGQKYFKDNLKLNEPYVV 117

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDV-NFPLIEAVYSLPTGLS-----VDLFKKIIVEAL 179
            GK+ K  ++  + HP               +  +Y     L+       +  +++ +  
Sbjct: 118 YGKVSKYGSKYNIAHPDVELLKEHRSRQQSAMTPIYPSTEQLTKRNVTNKMVVRMMQQLF 177

Query: 180 SRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           S +     E +   +  +        A    H P+ A   + +     RL ++EL   Q+
Sbjct: 178 SEVQNSFTETLSGQIRAQHQLVDKNTAMYNAHFPKSAALLQQSI---YRLKFEELFFIQM 234

Query: 239 ALLLMRKQFKKEIG-IPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            LLL  +  K  I        G+        ++PF  T +Q+  +K+I  DM     M R
Sbjct: 235 ELLLQNRIRKSRIKGYAFEKVGEQFNDFYSNHLPFELTGAQKRVVKEIRADMGTGAHMNR 294

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VA++    A++ G QA IMAP  ILAQQH++ + +  +NT + V ++T
Sbjct: 295 LLQGDVGSGKTIVAILTCLLAIDNGFQACIMAPTEILAQQHFQGVSELLKNTGLQVALLT 354

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G++    RR     +  G  +I+IGTHAL +D + +  L + IVDEQHRFGV QR KL +
Sbjct: 355 GSVKTKARRVIHSDLEDGSLNILIGTHALIEDKVIFKNLGVAIVDEQHRFGVAQRAKLWK 414

Query: 417 KAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           K    PHVL+MTATPIPRTL ++  GD+DIS I E P GRK IKTV         V   L
Sbjct: 415 KNNLPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKEIKTVHRYDKNRLGVFSFL 474

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKES 532
           K  +++G++ Y + P IEE +  +++ +++ + S+   F +    ++I+HGRM   DK+ 
Sbjct: 475 KEEITKGRQVYMVYPLIEESETLDYKDLMDGYESVVREFPAPQYQVSIVHGRMKPEDKDY 534

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M+ F  G  ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG + S C
Sbjct: 535 EMERFVKGETQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGADQSFC 594

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           IL+    LS  + TR+  +  T DGF IAE DLK R  G+++G +QSG+    +A     
Sbjct: 595 ILMTSYKLSAEAKTRVETMVATTDGFEIAEVDLKLRGPGDMMGTRQSGVLALRVADIVKD 654

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           + +L IAR  A  +L +D  L      SI+ +L   Q  +  
Sbjct: 655 NDILAIARNTAIDLLQKDATLELPEHASIKKVLQFLQSKKGL 696


>gi|301164699|emb|CBW24258.1| putative ATP-dependent DNA helicase [Bacteroides fragilis 638R]
          Length = 698

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 234/689 (33%), Positives = 370/689 (53%), Gaps = 22/689 (3%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +           DLL+Y P  ++DR     I EI
Sbjct: 1   MFDLTTRDIKYLSGVGPQKAAVLNKELE-----IYSLHDLLYYFPYKYVDRSRIYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +F   ++R      +DGTG + L++F +  + + N +    + 
Sbjct: 56  DGNMPYIQLKGKILGFETFGEGRQRRLLAHFSDGTGVVDLVWF-QGIKYVTNKYKLHEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            V GK      RI + HP         ++   ++  Y+         L+    +K++   
Sbjct: 115 IVFGKPTVFNGRINVAHPDIDSPADLKLSSMGLQPYYNTTEKMKRSFLNSHAIEKMMATV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + ++   L E +   L+      S+ +A   IH P      E    A+ RL ++EL   Q
Sbjct: 175 IGQIQEPLFETLSPKLIADHHLMSLTDALRNIHFPSNP---ELLRKAQYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + +K  G      G+I      +N+PF  T +Q+  +++I QD+    +M 
Sbjct: 232 LNILRYAKDRQRKYRGYVFETVGEIFNTFYSKNLPFELTGAQKRVLREIRQDVGCGKQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHY+ I++      + VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLMALDNGFQACMMAPTEILANQHYDTIRELLFGMDVRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G  HI+IGTHA+ +D++ +  L L ++DEQHRFGV QR +L 
Sbjct: 352 TGSVKGKKREAILAGLLTGDVHILIGTHAVIEDTVNFASLGLAVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   
Sbjct: 412 SKSVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRRESLYRS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ 
Sbjct: 472 VRKQIEEGRQVYIVYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CI
Sbjct: 532 MQLFISGDAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+    L++ +  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTTYKLTEETRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADMARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ I   DP         +
Sbjct: 652 GQLLQYVRTIAEEITDADPGGVLPENAIL 680


>gi|254427398|ref|ZP_05041105.1| ATP-dependent DNA helicase RecG [Alcanivorax sp. DG881]
 gi|196193567|gb|EDX88526.1| ATP-dependent DNA helicase RecG [Alcanivorax sp. DG881]
          Length = 703

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 257/683 (37%), Positives = 372/683 (54%), Gaps = 32/683 (4%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           +GVG       +              DLLF+ P  + DR     I  +  E  V I G +
Sbjct: 15  KGVGP------AAAAKLAKLGLHNLEDLLFHLPFRYEDRTRISPIGSLRPETGVVIEGQV 68

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
              +     +RR     + DGTG +TL F++  T   KN    GR I V G+ +     +
Sbjct: 69  MA-ADVIFGRRRSLLCKVADGTGMVTLRFYHF-TAAQKNNLERGRTIRVYGEPRPGSAGL 126

Query: 137 IMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--EWIEK 191
              HP Y    +     PL   +  VY    G+S    + +  +AL  L   P  E I  
Sbjct: 127 EFYHPEYQLDYADSGLPPLEKALTPVYPTTDGVSQKTLRNLTGQALHYLHAHPPQELIPA 186

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQF 247
            LL +   PS+ +A + +HNP          E   PA +RL  +E++A Q+ +L  R   
Sbjct: 187 QLLDQSGLPSLTQALSKLHNPNPDDPVNLLLEGKHPAVKRLVMEEMVAHQLGMLQKRAGQ 246

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K      ++    + +K+  ++PF+ T +Q+  I +++ DM++ + MLR++QGDVGSGKT
Sbjct: 247 KAFHAPRLSGRT-LFEKLQASLPFALTGAQQRVIGELMGDMAKPHPMLRLVQGDVGSGKT 305

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           LVA  A  AA+E+G Q  +MAP  +LA+QH +  + +     I V  + G++    RR+ 
Sbjct: 306 LVAAAAALAAMESGYQVALMAPTELLAEQHRDNFRHWLAPLGIEVHWLAGSLGVKARRET 365

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------- 420
              +A+G A I++GTHALFQ+++Q+++L L I+DEQHRFGVQQRL L +K          
Sbjct: 366 NAALANGSARIVVGTHALFQEAVQFHRLGLTIIDEQHRFGVQQRLALREKGRFDTVNGSQ 425

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L +TATPIPRTL ++  GD+D S I E P GRKPI T+++P +R  +VIER+    
Sbjct: 426 VPHQLTLTATPIPRTLAMSVYGDLDTSVIDEMPPGRKPIDTLVLPESRRPQVIERINDAC 485

Query: 480 S-----EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
                 +  +AYW+C  IEE +E   ++    F  L        I ++HGRM   +K   
Sbjct: 486 RPDSGRKNTQAYWVCTLIEESEELQAQAAEATFEELQIALPDLCIELVHGRMKAKEKAER 545

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F  G  +LLIATTVIEVG+DV +A+++++ENAE  GLAQLHQLRGRVGRG E S C+
Sbjct: 546 MARFSRGDAQLLIATTVIEVGVDVPNATLMVMENAERLGLAQLHQLRGRVGRGGEQSYCL 605

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLS     RL+V+++T DGF+IAEEDLK R  GE LG +Q+G   F IA     +
Sbjct: 606 LLYKNPLSLTGKRRLAVMRDTTDGFIIAEEDLKLRGPGEWLGTRQTGDLAFRIADLVRDE 665

Query: 654 SLLEIARKDAKHILTQDPDLTSV 676
           +L+E A+  A  ++   P     
Sbjct: 666 ALMEPAKDVANKLMHDCPQWVEP 688


>gi|58580774|ref|YP_199790.1| ATP-dependent DNA helicase RecG [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425368|gb|AAW74405.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 717

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 251/700 (35%), Positives = 380/700 (54%), Gaps = 36/700 (5%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           PS      APLS+  GVG K +   +              DL  + P  + DR     I+
Sbjct: 9   PSLAVAGQAPLSSLPGVGPKVADKFA------ARGILSVQDLWLHLPLRYEDRTRLTTIA 62

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGR 121
           ++       I G +        + R   ++ ++D + G + L FF+ +   +   F  G 
Sbjct: 63  QLQSGVPAQIEGRVDAVER-GFRFRPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FAVGT 120

Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEAL 179
           ++ V G  K  +N   +VHP Y +    +D      ++ VY +  G+     +K+I +AL
Sbjct: 121 RVRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIGQAL 180

Query: 180 SRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDEL 233
            RLP     E +    LQ +  PS+  A   +H P    D         PA++RLA +EL
Sbjct: 181 ERLPPEAALELLPPHWLQDEQLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQQRLAIEEL 240

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA Q++L   R   ++     +   G + Q++ R +PF  T +Q+   + I +D++Q   
Sbjct: 241 LAHQLSLRRQRIALQRFHAPSLPGNGTLVQQLRRALPFQLTGAQQRVFEQIARDLAQSWP 300

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + +   I + 
Sbjct: 301 MLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRDWLEPLGIRIV 360

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    R  A+  +A GQA +++GTHAL Q+++ ++ L L I+DEQHRFGV QRL 
Sbjct: 361 WLAGKVTGKARAAAMADVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHRFGVHQRLA 420

Query: 414 LTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L  K       PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+++   R  
Sbjct: 421 LRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTIVLSAERRP 480

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE--------------RFNSLHEHFT 515
           E++ER++   +EG++AYW+C  IEE +E    +  +               F +L     
Sbjct: 481 ELVERIRAACAEGRQAYWVCTLIEESEEPEKGARGQHGGPPRIEAQAAEVTFEALSAQLP 540

Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIENAE  GLA
Sbjct: 541 GVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGLA 600

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+ R  GE+L
Sbjct: 601 QLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLELRGPGELL 660

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           G +Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 661 GTRQTGLASFRIADLARDAGLLPRVQVLAERLLEEVPEIA 700


>gi|315613614|ref|ZP_07888521.1| DNA helicase RecG [Streptococcus sanguinis ATCC 49296]
 gi|315314305|gb|EFU62350.1| DNA helicase RecG [Streptococcus sanguinis ATCC 49296]
          Length = 671

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 240/687 (34%), Positives = 383/687 (55%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  N+PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKENLPFALTQAQEKSLQEILADMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++    +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PDLKLALLTGSLKAVEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKEQKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKYRMRIMTETTNGFILAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKIA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEDWQEDPEWRMIALHLEKREH 669


>gi|313199832|ref|YP_004038490.1| ATP-dependent DNA helicase recg [Methylovorus sp. MP688]
 gi|312439148|gb|ADQ83254.1| ATP-dependent DNA helicase RecG [Methylovorus sp. MP688]
          Length = 670

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 252/670 (37%), Positives = 366/670 (54%), Gaps = 15/670 (2%)

Query: 30  IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP 89
           +            DLL + P  ++D      I ++       + G I  H+  Q + R+ 
Sbjct: 2   LNGLRKLGIHSIEDLLLHLPLRYVDETRVTPIRDLRLGEQAQVEGEII-HAEVQYKPRKA 60

Query: 90  YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ 149
               L D +G +TL F       +     EG ++   G+++       MVHP        
Sbjct: 61  LIARLQDASGILTLRFLNFYPSQIA-ALKEGNRLRALGEVRNGFFGYEMVHPQCKPVREG 119

Query: 150 DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209
                 +  VY    GLS    +K I  AL       E +   + Q K++P   ++   +
Sbjct: 120 AAVKQTLTPVYPTTAGLSQPSLRKWIGRALETASH-DELLPAKVYQGKAWPDFQQSLLQL 178

Query: 210 HNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI 265
           H P    D     E T+PA +RLA+DELLA QI++     + +      +    K+   +
Sbjct: 179 HYPPPDADQHALQEKTTPAWQRLAFDELLAQQISMRKHYARRRGLGAPAMPPSKKLVSAL 238

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L+++PF  T +Q+    DI  D+ +   M R+LQGDVGSGKT+VA +A   A+E G QA 
Sbjct: 239 LKSLPFGLTAAQQRVFSDIQHDLGRSYPMQRLLQGDVGSGKTIVAAMAALQAIEHGWQAA 298

Query: 326 IMAPIGILAQQHYEFIKKYTQNT-----QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           IMAP  ILA+QH+  +  + QN       + V  + G+  +  R +AL  IA G+A ++I
Sbjct: 299 IMAPTEILAEQHFNKLNTWLQNLAAGAAPVRVVWVAGSQGKKARAEALAAIASGEAQLVI 358

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTHA+FQD +Q+ +L LV+VDEQHRFGVQQRL L QK   PH L+M+ATPIPRTL ++  
Sbjct: 359 GTHAVFQDQVQFARLGLVVVDEQHRFGVQQRLALRQKGAQPHQLMMSATPIPRTLSMSYF 418

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D+D+S I E P GR P+ T ++   R +EV ER++   S+G++AYW+CP IEE +    
Sbjct: 419 ADLDVSVIDELPPGRTPVVTKLVSDARREEVFERVRAACSQGRQAYWVCPLIEESEALQL 478

Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           ++ V+   +L E F    + ++HGRM   DK++VM +F      LL+ATTVIEVG+DV +
Sbjct: 479 QTAVDTHIALQEVFPELQVGLVHGRMKPADKQAVMQAFAANQIHLLVATTVIEVGVDVPN 538

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           AS+++IE+AE  GL+QLHQLRGRVGRG   S+CILLY  PLS+ +  RL ++  + DGF 
Sbjct: 539 ASLMVIEHAERMGLSQLHQLRGRVGRGAASSACILLYQTPLSETARARLKIIYESSDGFE 598

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
           IA+ DL  R  GE +GI+QSG P   IA  E    LLE A+  A  +L + P   +    
Sbjct: 599 IAQADLHLRGPGEFMGIRQSGTPMLKIADLERDAGLLEEAQAMADWLLQKHP--QAAEAH 656

Query: 680 SIRILLYLYQ 689
             R L    +
Sbjct: 657 LQRWLHQAQE 666


>gi|52842250|ref|YP_096049.1| ATP-dependent DNA helicase RecG [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629361|gb|AAU28102.1| ATP dependent DNA helicase RecG [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 690

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 246/669 (36%), Positives = 374/669 (55%), Gaps = 24/669 (3%)

Query: 14  STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73
               GVG   +  L+K             DLLF+ P  + DR     I ++       I 
Sbjct: 7   EYLTGVGPTIAAKLAK------CGIFTIQDLLFHLPYKYQDRTRITPIQDLRSNEWCVIA 60

Query: 74  GYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
           G++ + +  +  KR      + D TG + L FF+   + +         I   G+++   
Sbjct: 61  GHVYK-TEIKYGKRMMLNCYVEDKTGVVKLRFFHFNKQQI-QALNNSTMIRAFGEVRGFN 118

Query: 134 NRIIMVHPHYIFHNSQDV--NFPLIEAVYSLPTGLSVDLFKKIIVEALSR----LPVLPE 187
           N + M+HP Y   + +        +  +Y    GL+    ++++  AL +    L  L E
Sbjct: 119 NHLEMIHPEYQLIDQESDFHVEETLTPIYPSTQGLTQTRLRQLVKIALEQSEHELHQL-E 177

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
           W+ +  LQ+ +F  + EA  ++HNP              PA +RL +DELLA Q+++   
Sbjct: 178 WMSEKQLQENNFYDLGEAIKLLHNPPPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFA 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+   K     I  +  I ++ + ++PFS T +Q+   K+I  D++Q   MLR+LQGDVG
Sbjct: 238 RQSRSKLQAPAILFDNAIHKRFIESLPFSLTNAQQRVFKEISFDLTQSKPMLRLLQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT++A +A   A+  G Q   MAP  +L++QH   + K+ +   I V  ++G M    
Sbjct: 298 AGKTIIAALAALQAISQGFQVAFMAPTDLLSEQHTNSLSKWLEPIGINVLRLSGKMKTTE 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R+ AL  +      +I+GTHALFQ+ +++ +L LVI+DEQHRFGV+QRL L QK      
Sbjct: 358 RKNALAALQDNSCQLIVGTHALFQEQVEFARLGLVIIDEQHRFGVEQRLLLQQKGQLNQL 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH LLMTATPIPRTL ++    +DIS I E P GR PI T ++  ++ + +IERL+  +
Sbjct: 418 IPHQLLMTATPIPRTLSMSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAI 477

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
           + GK+AYW+C  IEE ++    +  +    L E    + + ++HGRM  ++KE+ M +FK
Sbjct: 478 ANGKQAYWVCTLIEESEKLQCMAATDTSKKLQEQLSFARVGLVHGRMKALEKEATMAAFK 537

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+LLY  
Sbjct: 538 QGEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQS 597

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL ++++T DGFLI+E+DL+ R  GEILG +Q+G  +F IA  +   +L  I
Sbjct: 598 PLSQQGAERLKIMRSTTDGFLISEKDLELRGSGEILGTRQTGFRQFKIANLQRDKTLFAI 657

Query: 659 ARKDAKHIL 667
            R  AK ++
Sbjct: 658 LRPIAKQLV 666


>gi|188578256|ref|YP_001915185.1| ATP-dependent DNA helicase RecG [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188522708|gb|ACD60653.1| ATP-dependent DNA helicase RecG [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 717

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 252/700 (36%), Positives = 381/700 (54%), Gaps = 36/700 (5%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           PS      APLS+  GVG K +   +              DL  + P  + DR     I+
Sbjct: 9   PSLAVAGQAPLSSLPGVGPKVADKFA------ARGILSVQDLWLHLPLRYEDRTRLTTIA 62

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGR 121
           ++       I G +        + R   ++ ++D + G + L FF+ +   +   F  G 
Sbjct: 63  QLQSGVPAQIEGRVDAVER-GFRFRPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FAVGT 120

Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEAL 179
           ++ V G  K  +N   +VHP Y +    +D      ++ VY +  G+     +K+I +AL
Sbjct: 121 RVRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIGQAL 180

Query: 180 SRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDEL 233
            RLP     E +    LQ +  PS+  A  I+H P    D         PA++RLA +EL
Sbjct: 181 ERLPPEAALELLPPHWLQDEQLPSLRAALLIMHRPPVGTDPQQLLAGGHPAQQRLAIEEL 240

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA Q++L   R   ++     +   G + Q++ R +PF  T +Q+   + I +D++Q   
Sbjct: 241 LAHQLSLRRQRIALQRFHAPSLPGNGTLVQQLRRALPFQLTGAQQRVFEQIARDLAQSWP 300

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + +   I + 
Sbjct: 301 MLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRDWLEPLGIRIV 360

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    R  A+  +A GQA +++GTHAL Q+++ ++ L L I+DEQHRFGV QRL 
Sbjct: 361 WLAGKVTGKARAAAMADVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHRFGVHQRLA 420

Query: 414 LTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L  K       PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+++   R  
Sbjct: 421 LRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTIVLSAERRP 480

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE--------------RFNSLHEHFT 515
           E++ER++   +EG++AYW+C  IEE +E    +  +               F +L     
Sbjct: 481 ELVERIRAACAEGRQAYWVCTLIEESEEPEKGARGQHGGPPRIEAQAAEVTFEALSAQLP 540

Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIENAE  GLA
Sbjct: 541 GVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGLA 600

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+ R  GE+L
Sbjct: 601 QLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLELRGPGELL 660

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           G +Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 661 GTRQTGLASFRIADLARDAGLLPRVQVLAERLLEEVPEIA 700


>gi|229061458|ref|ZP_04198803.1| ATP-dependent DNA helicase recG [Bacillus cereus AH603]
 gi|228717881|gb|EEL69529.1| ATP-dependent DNA helicase recG [Bacillus cereus AH603]
          Length = 682

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 226/681 (33%), Positives = 370/681 (54%), Gaps = 23/681 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLNLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       +    V    +E VYS+   L+V   ++ + +A       + E 
Sbjct: 119 DQHRQTIAVS----ELNFGPVVRQQEVEPVYSVKGKLTVKQMRRFVAQAFKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQF 247
           +   LL +    S  EA   +H P   +D      AR R  Y+E    Q+ +  L + + 
Sbjct: 175 LPDGLLSRYKLLSRYEALRGLHFPVGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   G    +     Q+    +PF  T +Q   + +I++DM    RM R+LQGDVGSGKT
Sbjct: 232 ENSKGTKKEISLVELQEFTDALPFPLTGAQRRVVDEIMKDMISPYRMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IA+ AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++  A RR+ 
Sbjct: 292 VVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGARRREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  +  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MT
Sbjct: 352 LSTLEQGEVDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+  ++  + +G++AY 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE +M  F     ++L
Sbjct: 472 ICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+   
Sbjct: 532 VSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  
Sbjct: 591 ERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAI 650

Query: 666 ILTQDPDLTSVRGQSIRILLY 686
           ++  +    + +  S+R  L 
Sbjct: 651 LVDSEAFWHNDQYASLRTYLD 671


>gi|229086408|ref|ZP_04218584.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-44]
 gi|228696924|gb|EEL49733.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-44]
          Length = 685

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 228/688 (33%), Positives = 377/688 (54%), Gaps = 24/688 (3%)

Query: 5   FLNPL-FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
            LN +   P++  +G+G++ S  L ++             LL Y P  + D      ++E
Sbjct: 3   ILNEVVQVPVTDVKGIGEETSELLHEM------GIYTVSHLLEYFPYRYEDY-AMKDLAE 55

Query: 64  ISEERIVTITGYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           +  E  VT+ G +      Q   ++     + +      IT++ F R     K       
Sbjct: 56  VKHEERVTVEGKVHSAPLLQYYGKKKSRLTVRVLVDRYLITVVCFNR--PYYKQKLKLDE 113

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
            +T+TGK  + +  I +       H         +E VYS+   L+V   ++ I +AL+ 
Sbjct: 114 TVTITGKWDQHRQTIAVS----ELHFGPVARQQDVEPVYSVKGKLTVKQMRRFIAQALNE 169

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
               + E +   LL +       EA   +H P   +D      AR R  Y+E    Q+ +
Sbjct: 170 YGNAITEVLPDGLLSRYKLLPRYEALRALHFPVGQEDL---KQARRRFVYEEFFLFQLKM 226

Query: 241 L-LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             L + + +   G   ++  +  ++    +PF  T +Q   + +I++DM    RM R+LQ
Sbjct: 227 QTLRKMERENSKGTKKDISMRELEEFTDALPFPLTSAQRRVVSEIMKDMQSPYRMNRLLQ 286

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA IA+ AA  A  Q  +M P  ILA+QHY+ + +   +  + VE++T ++
Sbjct: 287 GDVGSGKTVVAAIALYAAKLAHYQGALMVPTEILAEQHYQSLVETFSHFNMNVELLTSSV 346

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  L +K  
Sbjct: 347 KGARRREVLAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGE 406

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           +P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + ++ V+  ++  +
Sbjct: 407 SPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLERVLGFVEKEV 466

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSF 537
            +G++AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE VM+ F
Sbjct: 467 KKGRQAYVICPLIEESEKLDVQNAIDLHSMLMHHYQGKSQVGLMHGRLSSQEKEDVMEQF 526

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  
Sbjct: 527 SENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIAD 586

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           P  S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A        LE
Sbjct: 587 PK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALE 645

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILL 685
            AR+DA  ++  +    + +   +R+ L
Sbjct: 646 TARQDAALLVDSEAFWHNEQYVPLRVYL 673


>gi|307705414|ref|ZP_07642271.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK597]
 gi|307621013|gb|EFO00093.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK597]
          Length = 671

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 240/687 (34%), Positives = 382/687 (55%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKTSLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  N+PF+ T +QE ++ +IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKENLPFALTPAQEKSLLEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQSLF--PDLKLALLTGSLKVAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRVLREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLIWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  +F     +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAYFAGKAEVALLHGKMKSDEKDQIMQEFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMLIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEGWQEDPEWRMIALHLEKKEH 669


>gi|304413237|ref|ZP_07394710.1| ATP-dependent DNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304284080|gb|EFL92473.1| ATP-dependent DNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 697

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 263/711 (36%), Positives = 389/711 (54%), Gaps = 32/711 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PLS+  GVG   +  L+KI            DLL + P  + DR +   
Sbjct: 1   MKGRLLDTV--PLSSLTGVGASQAAKLTKI------GLETVQDLLLHLPLRYEDRTHLYH 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      TI G I   S     +R      L+DG+G + L FF   T M KN    G
Sbjct: 53  ITDLLPGLTATIAGKILS-SEISSGRRAMLTSRLDDGSGVVILRFFNFNTSM-KNSLSAG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + I   G++K+ +N + ++HP Y  ++          +  +Y+   GL     + +I +A
Sbjct: 111 KHIVAYGEVKQGRNGLEIIHPEYRTYDEDKGIRLQYSLTPIYTSTEGLRQSTLRNLINQA 170

Query: 179 LSRLPVL--PEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFE-WTSPARERLAYDE 232
           L+ L      E +  ++    SF S++ A + +H P       D E    PA+ RL  +E
Sbjct: 171 LNLLDTFTVAELLPVEVCD--SFVSLSTAIHTLHRPSADISLIDLEKGQHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINV----EGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
           L+A  +++L  R   K     P+         +  + L  + F PT +Q+  + +I QD+
Sbjct: 229 LVAHNLSMLAARAGTKDYQAQPLPPSTVSHDTLKARFLAALAFHPTHAQQRVVDEIEQDL 288

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
            +   M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH E  +++ +  
Sbjct: 289 LRTFPMMRLIQGDVGSGKTLVAALAALRAIAQGKQVALMAPTELLAEQHLETFRQWFEPL 348

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            I V  + G      R    E +A GQ  +++GTHA+FQ  +++ KL LVI+DEQHRFGV
Sbjct: 349 SISVGWLAGKQKGKIRLIQQEAVAKGQVSMVVGTHAIFQQQVRFSKLALVIIDEQHRFGV 408

Query: 409 QQRLKL----TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            QRL L     Q+   PH L+MTATPIPRTL +T+  D+DIS I E P GR PI TV IP
Sbjct: 409 HQRLALWEKGKQQGFHPHQLIMTATPIPRTLAMTAYADLDISIIDELPPGRTPISTVAIP 468

Query: 465 INRIDEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522
             R D+VI+R+K   L EG++ YW+C  IEE +    ++    +  L        + +IH
Sbjct: 469 DTRRDDVIQRIKHACLEEGRQVYWVCTLIEESELLEAQAAAVTYAELQATLVDVKLGLIH 528

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GRM+  +K++VM  FK G  +LLIATTVIEVG+DV +AS++II+N E  GLAQLHQLRGR
Sbjct: 529 GRMTAQEKQAVMQVFKQGELQLLIATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGR 588

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG   S C+LLY  PL+K    RL VL+ + DGF+IA+ DL+ R  GE+LG +Q+G  
Sbjct: 589 VGRGSTASHCVLLYKTPLTKTVQMRLQVLRESNDGFVIAQRDLEIRGPGELLGTRQTGGT 648

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           +F IA      ++L   ++ A+H+  + P+  +      R L    +Y  A
Sbjct: 649 EFKIADLLRDQNILPEVQRIARHLHQKYPEQAA--ALIERWLPEKRRYTNA 697


>gi|289523456|ref|ZP_06440310.1| ATP-dependent DNA helicase RecG [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503148|gb|EFD24312.1| ATP-dependent DNA helicase RecG [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 696

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 244/689 (35%), Positives = 368/689 (53%), Gaps = 20/689 (2%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P+    L   +   +GVG K +  LSK+            DLL++ P  + DR     I 
Sbjct: 6   PAEEELLCKSVRFLKGVGPKRASLLSKL------GVETVEDLLYFFPRRYEDRRQITPIK 59

Query: 63  EISEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
            +  +    +   +        +KR        + DGT     L+F ++   L+N+   G
Sbjct: 60  SLEPDSYAALLVRVVGVEKKITKKRNLNLTVATVTDGTDIAQALWFNKRG--LENLLSIG 117

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
             + + GKIK+    + +++P +              I  +Y L  GLS    + +I   
Sbjct: 118 TLVALFGKIKENYGMLQILNPEFEIIEEDALPEEMGKIVPIYPLTEGLSQRWLRLLIRRT 177

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   L  + E++ +D++ +  FP + +A    H P    D       R+RLA+DEL   Q
Sbjct: 178 LSEYLSYVEEFLPEDIVLRYGFPPLKKAILGYHYP---DDERGWKSCRKRLAFDELFLLQ 234

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQK--ILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + + + R+Q ++E   P    G   Q   +   + F  T +QE  + DI  D+ +K  M 
Sbjct: 235 LGVAIKRRQMEEETSAPKLSCGGPLQMKFVENCLNFKLTSAQEMVLGDICVDIFRKIPMN 294

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT++A++AM AAV+ G QA +M P  +LA QHY  I  +       V ++
Sbjct: 295 RLLQGDVGSGKTVIAVLAMLAAVDTGYQAAMMVPTEVLANQHYAKITNWLSKLNAEVTLL 354

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           T ++    R K  E I  G++ I+IGTH+L Q+ +++ +L LV++DEQHRFGV QR  L 
Sbjct: 355 TSSLTPQERAKRYEDIKSGRSRIVIGTHSLIQEGVEFRELGLVVIDEQHRFGVLQRRTLM 414

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K + PH L+MTATPIPRTL LT  GD+ +S I E P GR P++T  I   ++ E+ E +
Sbjct: 415 DKGSYPHTLVMTATPIPRTLALTVYGDLSLSIIDELPPGRTPVRTQWIGKGKLKELYEFV 474

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVM 534
           K  L  G + YW+CP I+E +  +  SV +R+ SL E F    + ++HGR+   DK+   
Sbjct: 475 KKKLLAGNQVYWVCPLIDESESIDATSVQKRYRSLCEIFSDFKVGLLHGRLGAPDKDETY 534

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F  G   +L+AT+VIEVGIDV  A+I++IE+A  FGL+QLHQLRGRVGRG     C L
Sbjct: 535 RAFLRGDLDILVATSVIEVGIDVARANIMVIEDAYRFGLSQLHQLRGRVGRGGGQGYCFL 594

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           L   P +  +  R  V+ +T DGF+IAEEDLK R  G   G++Q G+  F +A       
Sbjct: 595 LGEAP-TPEARKRFKVMCSTSDGFVIAEEDLKLRGPGAFCGVRQHGITDFRVADLVNDVD 653

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           LL+IAR++A+ ++  DP L        R+
Sbjct: 654 LLDIAREEAQVLVENDPSLDKYPKLRARL 682


>gi|60683179|ref|YP_213323.1| ATP-dependent DNA helicase RecG [Bacteroides fragilis NCTC 9343]
 gi|60494613|emb|CAH09414.1| putative ATP-dependent DNA helicase [Bacteroides fragilis NCTC
           9343]
          Length = 698

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 237/697 (34%), Positives = 376/697 (53%), Gaps = 28/697 (4%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +           DLL+Y P  ++DR     I EI
Sbjct: 1   MFDLTTRDIKYLSGVGPQKAAVLNKELE-----IYSLHDLLYYFPYKYVDRSRIYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +F   ++R      +DGTG + L++F +  + + N +    + 
Sbjct: 56  DGNMPYIQLKGKILGFETFGEGRQRRLLAHFSDGTGVVDLVWF-QGIKYVTNKYKLHEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            V GK      RI + HP         ++   ++  Y+         L+    +K++   
Sbjct: 115 IVFGKPTVFNGRINVAHPDIDSPADLKLSSMGLQPYYNTTEKMKRSFLNSHAIEKMMATV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + ++   L E +   L+      S+ +A   IH P      E    A+ RL ++EL   Q
Sbjct: 175 IGQIQEPLSETLSPKLIADHHLMSLTDALRNIHFPSNP---ELLRKAQYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + +K  G      G+I      +N+PF  T +Q+  +++I QD+    +M 
Sbjct: 232 LNILRYAKDRQRKYRGYVFETVGEIFNTFYSKNLPFELTGAQKRVLREIRQDVGCGKQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHY+ I++      + VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLMALDNGFQACMMAPTEILANQHYDTIRELLFGMDVRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R   L  +  G  HI+IGTHA+ +D++ +  L L ++DEQHRFGV QR +L 
Sbjct: 352 TGSVKGKKREAILAGLLTGDVHILIGTHAVIEDTVNFASLGLAVIDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    NR + +   
Sbjct: 412 SKSVQPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIATIHQFDNRRESLYRS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P I+E ++ + +++ E +  + E F    +  +HG+M   +K++ 
Sbjct: 472 VRKQIEEGRQVYIVYPLIKESEKIDLKNLEEGYLHICEEFPDCKVCKVHGKMKPAEKDAQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S CI
Sbjct: 532 MQLFISGDAQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+    L++ +  RL ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTTYKLTEETRKRLEIMVRTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQD-----PDLTSVRGQSIRIL 684
             LL+  R  A+ I   D     P+  ++  Q +R L
Sbjct: 652 GQLLQYVRTIAEEITDADLGGVLPE-NAILWQQLRAL 687


>gi|312902137|ref|ZP_07761397.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0470]
 gi|311290801|gb|EFQ69357.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0470]
          Length = 678

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 227/694 (32%), Positives = 375/694 (54%), Gaps = 30/694 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            DLL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIATIEDLLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  ++          I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      ++ E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFA---PIYHVNKKVRQSTLVQLIRTAFEEYGSLIEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K    S  EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMSRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + I  +    +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAIQYDVDRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL+
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASAL 648

Query: 667 --LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             + +     + +G + R+       +EA QF  
Sbjct: 649 WKVKEWWQYPAYQGLANRVK----PQDEAVQFFD 678


>gi|306829933|ref|ZP_07463120.1| DNA helicase RecG [Streptococcus mitis ATCC 6249]
 gi|304427944|gb|EFM31037.1| DNA helicase RecG [Streptococcus mitis ATCC 6249]
          Length = 671

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 240/675 (35%), Positives = 378/675 (56%), Gaps = 30/675 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQAGLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  N+PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTVVKENLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  + +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PDLKLALLTGSLKASEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  GD+D+S I + PAGRKPI T  I   ++  V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITVFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPRVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADVIEDFPILEEARKVA 642

Query: 664 KHI-----LTQDPDL 673
            +I       +DP+ 
Sbjct: 643 SYISSIEGWKEDPEW 657


>gi|300088038|ref|YP_003758560.1| ATP-dependent DNA helicase RecG [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527771|gb|ADJ26239.1| ATP-dependent DNA helicase RecG [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 824

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 238/698 (34%), Positives = 374/698 (53%), Gaps = 38/698 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+++ +G+       L K+            D+L++ PS  +D      I+E+S   
Sbjct: 125 LELPVTSLKGINDSTGSRLRKL------GIHTVRDMLYHFPSRHVDYSRTTPIAELSPGP 178

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
             TI   + +  +     RR  + ++ D TG I  L+F      L        ++ ++GK
Sbjct: 179 EQTIVATVWEVRTTTPGGRRSTEAIVGDETGNIRALWFNN--PYLTRQIHANDRLVLSGK 236

Query: 129 IKKLKNRIIMVHPHYI-FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLP 186
           I   KN ++   P +    N + V+   +  +Y L  GL     +K++ E +    P L 
Sbjct: 237 IGVFKNTLVFESPEWEKLENRELVHTGRLAPIYPLTAGLFPRQMRKLMKEVVDGFAPSLE 296

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E++ +D+  ++   ++ EA    H P    D+E    AR RLA+DEL   Q+ ++  ++ 
Sbjct: 297 EYLPEDIRARRDLITLPEAVAQAHFP---DDYEAKDAARSRLAFDELFVLQLGVMARKRA 353

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           ++    G+P   +  + ++ L ++ F  T +Q  ++ DIL DMS+   M R+LQGDVGSG
Sbjct: 354 WRLSRPGLPTPTDQSLLKRFLDSLSFQLTAAQRRSLNDILDDMSRSEAMSRLLQGDVGSG 413

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT----------------- 348
           KT+VA  A   +V AG Q   MAP  ILA+QHY  +                        
Sbjct: 414 KTVVATAAALMSVAAGYQCAFMAPTEILAEQHYRSVTGMLDILASDRQESAGVTSFLGIL 473

Query: 349 ---QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
               + V ++ G+   + ++   +RI +G   ++IGTH+L Q S+++ KL L I+DEQHR
Sbjct: 474 PDRPLTVALLIGDAKASGKKLIRDRIRNGDIDLVIGTHSLVQKSLKFQKLGLAIIDEQHR 533

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+QR  L QK   PH+L+MTATPIPRTL LT  GD+D+S I E P GR+ I+T  +  
Sbjct: 534 FGVEQRQNLRQKGNNPHLLVMTATPIPRTLALTLYGDLDLSVIDELPPGRQAIRTRWLKP 593

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHG 523
            +       ++  +   ++A+ ICP +EE +    R+    +  L         + +IHG
Sbjct: 594 EQRASAYAFIRKQVELKQQAFIICPLVEESEAIQARAATAEYEKLKMEIFPEYRLGLIHG 653

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           RMS  +KESVM +F  G   +L++T VIEVGIDV +A++++IE+A+ FGL+QLHQ RGRV
Sbjct: 654 RMSAAEKESVMKAFDQGRLDILVSTPVIEVGIDVPNATVMLIESADRFGLSQLHQFRGRV 713

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG E S C+LL   P S+ +  RLSV++N++DGF +AEEDL+ R  GE  G +QSG+P 
Sbjct: 714 GRGREQSYCMLLADNP-SEVANARLSVIENSQDGFSLAEEDLRLRGPGEFFGTRQSGLPD 772

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             +A+      +LE AR +A  +   DP+L     + +
Sbjct: 773 LKMARLS-DVPILEAARAEAMRLFENDPELKEPEHRRL 809


>gi|84622705|ref|YP_450077.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84366645|dbj|BAE67803.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 717

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 251/700 (35%), Positives = 381/700 (54%), Gaps = 36/700 (5%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           PS      APLS+  GVG K +   +              DL  + P  + DR     I+
Sbjct: 9   PSLAVAGQAPLSSLPGVGPKVADKFA------ARGILSVQDLWLHLPLRYEDRTRLTTIA 62

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGR 121
           ++       I G +        + R   ++ ++D + G + L FF+ +   +   F  G 
Sbjct: 63  QLQSGVPAQIEGRVDAVER-GFRFRPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FAVGT 120

Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEAL 179
           ++ V G  K  +N   +VHP Y +    +D      ++ VY +  G+     +K+I +AL
Sbjct: 121 RVRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIGQAL 180

Query: 180 SRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDEL 233
            RLP     E +    LQ +  PS+  A   +H P    D         PA++RLA +EL
Sbjct: 181 ERLPPEAALELLPPHWLQDEQLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQQRLAIEEL 240

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA Q++L   R   ++     +   G + Q++ R +PF  T +Q+   + I +D++Q   
Sbjct: 241 LAHQLSLRRQRIALQRFHAPSLPGNGTLVQQLRRALPFQLTGAQQRVFEQIARDLAQSWP 300

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + +   I + 
Sbjct: 301 MLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRDWLEPLGIRIV 360

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    R  A+  +A GQA +++GTHAL Q+++ ++ L L I+DEQHRFGV QRL 
Sbjct: 361 WLAGKVTGKARAAAMADVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHRFGVHQRLA 420

Query: 414 LTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L  K       PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+++   R  
Sbjct: 421 LRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTIVLSAERRP 480

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE--------------RFNSLHEHFT 515
           E++ER++   +EG++AYW+C  IEE +E    +  +               F +L     
Sbjct: 481 ELVERIRAACAEGRQAYWVCTLIEESEEPEKGARGQHGGPPRIEAQAAEVTFEALSAQLP 540

Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIENAE  GLA
Sbjct: 541 GVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGLA 600

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG + SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+ R  GE+L
Sbjct: 601 QLHQLRGRVGRGADASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLELRGPGELL 660

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           G +Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 661 GTRQTGLASFRIADLARDAGLLPRVQVLAERLLEEVPEIA 700


>gi|302879848|ref|YP_003848412.1| ATP-dependent DNA helicase RecG [Gallionella capsiferriformans
           ES-2]
 gi|302582637|gb|ADL56648.1| ATP-dependent DNA helicase RecG [Gallionella capsiferriformans
           ES-2]
          Length = 685

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 244/678 (35%), Positives = 373/678 (55%), Gaps = 28/678 (4%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L+K+   G  +     DLL + P  + D      ++++     V + G I+ H+   
Sbjct: 9   AATLTKLAKLGIRHR---ADLLLHLPLRYEDETELVSLADVEPGETVQVQGVIT-HNEVL 64

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+     L D   E+ L F       +K +   GR++   G+ +     + MVHP  
Sbjct: 65  YKPRKILVCRLQDKEDELYLRFLNFYPSQIK-LLAVGRQVRAIGEARIGYFGLEMVHPKC 123

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
              + +      +  VY    GLS    KK+I  AL  L    + + +      + P   
Sbjct: 124 RAVSDKTQLATSLTPVYPTTAGLSQLTLKKLIANALEVLNP-ADPLPEKFRHNLNLPGFF 182

Query: 204 EAFNIIHNPRKA----KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           ++  ++HNP          + +  A  R+ +DELLA Q+++ +  K+  + I   +  +G
Sbjct: 183 DSIRLLHNPTTDIAACTLADKSHAAWRRIKFDELLAQQLSMRVHHKERSRRIAPALPPQG 242

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                +L+ +PFS TK+Q+    +I  D+++ + M R+L GDVGSGKT+VA +A   A+E
Sbjct: 243 HYTDSLLKILPFSLTKAQQKVYAEISADLARPHPMQRLLLGDVGSGKTIVAALAALQAIE 302

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G Q  +MAP  ILA+QHY  + ++     I+   ++G++ +  +R A E IA G+  + 
Sbjct: 303 NGYQVALMAPTEILAEQHYLKLTEWLSPLGIVPVWLSGSLKKKDKRVAAELIASGETWLA 362

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP----------HVLLMTAT 429
           IGTHALFQ+ I ++KL L IVDEQH+FGVQQRL L  K   P          H L+M+AT
Sbjct: 363 IGTHALFQEQITFHKLGLAIVDEQHKFGVQQRLALHAKGKQPVAPDEKSSEPHQLMMSAT 422

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL ++   D+D+S I E P GR P+ T ++   R +EV ER++     G +AYW+C
Sbjct: 423 PIPRTLAMSYYADLDVSVIDELPPGRTPVITKLVSDTRREEVFERVRAACMTGAQAYWVC 482

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P I+E +    ++  E F  L + F    + ++HG+M   +K   M +FK G  +LL+AT
Sbjct: 483 PLIDESEVLQLQNAQETFELLTDTFPDLRVGLVHGKMESAEKVRTMSAFKAGELQLLVAT 542

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +AS+++I++AE  GLAQLHQLRGRVGRG   S CILLYH PLS+ + TRL
Sbjct: 543 TVIEVGVDVPNASLMVIDHAERMGLAQLHQLRGRVGRGSAQSLCILLYHKPLSELARTRL 602

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            V+    DGF+IA++DL+ R  GE+LG +QSG+     A  E  + LLE AR+ A  +L+
Sbjct: 603 KVIFENTDGFVIAQQDLQLRGPGELLGARQSGVAMLRFADIEADEDLLEHAREVADELLS 662

Query: 669 QDPDLTSVRGQSIRILLY 686
             PD       + R  L+
Sbjct: 663 DYPD-------AARTYLH 673


>gi|332981575|ref|YP_004463016.1| ATP-dependent DNA helicase RecG [Mahella australiensis 50-1 BON]
 gi|332699253|gb|AEE96194.1| ATP-dependent DNA helicase RecG [Mahella australiensis 50-1 BON]
          Length = 691

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 227/665 (34%), Positives = 377/665 (56%), Gaps = 20/665 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+   +GVG + +  L+K+      +     D++++ P  + DR     IS     ++V 
Sbjct: 9   PVQYIKGVGPRRARLLNKL------DIYTLADVIYHFPRDYEDRTEIMPISRWQSGQVVN 62

Query: 72  ITGYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I   I+        + R    KI + DGT     +++ +K   +++ F  G+   + GK+
Sbjct: 63  IVCKIAGPPRRVKPRARLIISKIPIQDGTSSAYAVWYNQK--FIEDRFVPGKWYFMRGKV 120

Query: 130 KKLKNRIIMVHPHYIFHNSQDV-NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPE 187
                 I +++P +   +S D      +  +Y     +S  + + I+   L  +     E
Sbjct: 121 NIGYGEIQLLNPQWEEISSPDERGNEGLVPIYPSTADMSQKILRNIVKNVLELVKGQWEE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQ 246
           ++  +L ++     I  A N IH P  A+     + AR RLA+DEL   Q+    ++ K 
Sbjct: 181 YLPIELRKRYDLAEINFAINNIHFPVNARSL---NIARRRLAFDELFCMQLGFYSIKGKN 237

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
             +++G P  +     +  +R +PF+ T +Q+  + +IL DMS    M R++QGDVG GK
Sbjct: 238 DVQKVGAPFRIHDIGLEAFIRRLPFALTGAQQRVLDEILADMSNTRPMNRLVQGDVGCGK 297

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T++A++A+  A     Q  +MAP  +LAQQH++ ++K+     I + +++GNM +  + +
Sbjct: 298 TILAVLALYVAASNCYQGAMMAPTEVLAQQHFQTLQKFFDGYDISIALLSGNMGENKKNE 357

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE I  G+  +++GTHA+ QD++++++L LVI DEQHRFGV+QR  L +K   PHVL+M
Sbjct: 358 VLEAIKDGRIDVVVGTHAVIQDNVEFHRLGLVITDEQHRFGVRQRAVLEKKGGNPHVLVM 417

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPR++ L   GD+D+S + E P GR+ ++T  IP +  D +   +   +S G +AY
Sbjct: 418 SATPIPRSMALIFYGDLDVSIVDEMPPGRQQVETFFIPPSMRDRLYSFINQEISNGHQAY 477

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP +E+    +  S  E ++ L E   F  SI +IHG+MS  DK  VM++FKNG   +
Sbjct: 478 IICPLVEQSDAIDALSAQELYDQLKEKGIFGDSIGLIHGQMSANDKNEVMEAFKNGQISV 537

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LI TTVIEVG+DV +A+++++ENAE FGLAQLHQLRGRVGRG+  S C L+ +   S ++
Sbjct: 538 LIGTTVIEVGVDVPNATVMVVENAERFGLAQLHQLRGRVGRGQHKSYCFLISNAGNS-DA 596

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL ++    DGF IAE+D++ R  G++LG++Q G+ +  +A      +LL+ + K+A 
Sbjct: 597 GRRLKIMTKLHDGFKIAEQDMQIRGPGQLLGLQQHGISELKLADIFSDIALLKQS-KEAV 655

Query: 665 HILTQ 669
            +L  
Sbjct: 656 QMLAD 660


>gi|323343283|ref|ZP_08083510.1| DNA helicase RecG [Prevotella oralis ATCC 33269]
 gi|323095102|gb|EFZ37676.1| DNA helicase RecG [Prevotella oralis ATCC 33269]
          Length = 700

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 229/691 (33%), Positives = 377/691 (54%), Gaps = 23/691 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            LN L   +   +GVG K    L+K ++        + DLL Y+P  ++DR    +I+++
Sbjct: 1   MLNILDQDIQYLQGVGPKRQAILNKELD-----IRTWRDLLEYYPYKYVDRSKVYRIADL 55

Query: 65  SEERI-VTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           + +   V I G I     + +  +++      +DGTG   L++F + T+ +   +  G +
Sbjct: 56  TGDMPFVQIKGRILSFEEYAVSARKKRIVAHFSDGTGVCDLVWF-QGTQYVYKNYKVGEE 114

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVE 177
             V GK      R    HP         ++   ++  Y         GL     +K+   
Sbjct: 115 YIVFGKPGIYNGRYRFAHPDIDRAAEVQLSSMGMQPYYMTTEKMKKAGLQSRGIEKLTKT 174

Query: 178 ALSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
            + +L    LPE +   +       S  EA   IH P+   + +     + RL ++EL  
Sbjct: 175 LVEKLTQDALPETLPPFITGPHHLVSRFEALRGIHYPKNLDEMQRA---QVRLKFEELFY 231

Query: 236 GQIALL-LMRKQFKKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            Q+ +L     + +K  G      G         ++PF+ T +Q+  + +I  DM    +
Sbjct: 232 VQLNILRYANDRRRKYRGYVFGRVGMQFNDFFHNHLPFALTNAQKRVMHEIRADMGSGRQ 291

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT VAL++M  A++ G QA IMAP  ILA+QH   ++ +     I VE
Sbjct: 292 MNRLLQGDVGSGKTFVALMSMLIAIDNGFQACIMAPTEILAEQHLATLRAFLGAMSIRVE 351

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG +    RR  L+ +A G+  I++GTHA+ ++++Q+ +L L +VDEQHRFGV+QR K
Sbjct: 352 LLTGIVKGKKRRHILDALAAGEVDILVGTHAIIEENVQFARLGLAVVDEQHRFGVEQRAK 411

Query: 414 LTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           L  K    PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+     ++  + 
Sbjct: 412 LWAKSKNPPHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKLDTQMTSLY 471

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKE 531
           + ++  + +G++ Y + P I+E ++ + +++ + F +L E F    ++ +HG+M   +KE
Sbjct: 472 QGIRQQIEQGRQVYIVFPLIKESEKIDLKNLEDGFETLKEAFPNYRMSKVHGQMKPAEKE 531

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           + M  F NG  ++L++TTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S 
Sbjct: 532 TEMQRFVNGETQILVSTTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSY 591

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPE 650
           CIL+    L++ +  R+ ++  T DGF I+E DLK R  G++ G +QSG+     IA   
Sbjct: 592 CILVTTYKLTEETQKRIDIMCETNDGFRISEADLKLRGPGDLEGTQQSGVAFDLKIANIA 651

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
               L+++AR +A+ I+  DP         +
Sbjct: 652 RDGQLIQLARDEAQKIIDNDPLCEKPEYTLL 682


>gi|296107648|ref|YP_003619349.1| ATP-dependent DNA helicase RecG [Legionella pneumophila 2300/99
           Alcoy]
 gi|295649550|gb|ADG25397.1| ATP-dependent DNA helicase RecG [Legionella pneumophila 2300/99
           Alcoy]
          Length = 690

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 246/669 (36%), Positives = 375/669 (56%), Gaps = 24/669 (3%)

Query: 14  STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73
               GVG   +  L+K             DLLF+ P  + DR     I ++       I 
Sbjct: 7   EYLTGVGPTIAAKLAK------CGIFTIQDLLFHLPYKYQDRTRITPIQDLRSNEWCVIA 60

Query: 74  GYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
           G++ + +  +  KR      + D TG + L FF+   + +         I   G+++   
Sbjct: 61  GHVCK-TEIKYGKRMMLNCYVEDKTGIVKLRFFHFNKQQI-QALNNSAMIRAFGEVRGFN 118

Query: 134 NRIIMVHPHYIFHNSQDV--NFPLIEAVYSLPTGLSVDLFKKIIVEALSR----LPVLPE 187
           N++ M+HP Y   + +        +  +Y    GL+    ++++  AL +    L  L E
Sbjct: 119 NQLEMIHPEYQLIDQESDFHVEETLTPIYPSTQGLTQTRLRQLVKIALEQSEHELHQL-E 177

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
           W+ +  LQ+ +F  + EA  ++HNP              PA +RL +DELLA Q+++   
Sbjct: 178 WMSEKQLQENNFYDLGEAIKLLHNPPPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFA 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+   K     I  +  I ++ + ++PFS T +Q+   K+I  D++Q   MLR+LQGDVG
Sbjct: 238 RQSRSKLQAPAILFDNAIHKRFIESLPFSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT++A +A   A+  G Q   MAP  +L++QH   + K+ +   I V  ++G M    
Sbjct: 298 AGKTIIAALAALQAISQGFQVAFMAPTDLLSEQHTNSLSKWLEPIGINVLRLSGKMKTTE 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R+ AL  +      +I+GTHALFQ+ +++ +L LVI+DEQHRFGV+QRL L QK      
Sbjct: 358 RKNALAALQDNSCQLIVGTHALFQEQVEFARLGLVIIDEQHRFGVEQRLLLQQKGQLNQL 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH LLMTATPIPRTL ++    +DIS I E P GR PI T ++  ++ + +IERL+  +
Sbjct: 418 IPHQLLMTATPIPRTLSMSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAI 477

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
           + GK+AYW+C  IEE ++    +  +    L E    + + ++HGRM  ++KE+ M +FK
Sbjct: 478 ANGKQAYWVCTLIEESEKLQCIAATDTSKKLQEQLSFARVGLVHGRMKALEKEATMAAFK 537

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+LLY  
Sbjct: 538 QGEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQS 597

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL ++++T DGFLI+E+DL+ R  GEILG +Q+G  +F IA  +   +L  I
Sbjct: 598 PLSQQGAERLKIMRSTTDGFLISEKDLELRGSGEILGTRQTGFRQFKIANLQRDKTLFAI 657

Query: 659 ARKDAKHIL 667
            R  AK ++
Sbjct: 658 LRPIAKQLM 666


>gi|134299934|ref|YP_001113430.1| ATP-dependent DNA helicase RecG [Desulfotomaculum reducens MI-1]
 gi|134052634|gb|ABO50605.1| ATP-dependent DNA helicase RecG [Desulfotomaculum reducens MI-1]
          Length = 685

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 228/677 (33%), Positives = 384/677 (56%), Gaps = 17/677 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +++P+   +GVG + +  L ++            DLL++ P  + DR         S+  
Sbjct: 4   IYSPIQYMKGVGPQRAKQLERL------GIFTTWDLLYHFPREYQDRSDIRPAHSFSQGD 57

Query: 69  IVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           + T+ G +      + ++     K+ L +G G    ++F +    +K  +  G+++ +TG
Sbjct: 58  LATVKGTVIAAQESKPRRGLSITKLALQEGAGTFYAVWFNQ--TYIKKQYPPGKELLITG 115

Query: 128 KIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           K+ +      +    +      + ++   I  +Y L   L+    + +I   L ++  L 
Sbjct: 116 KVDRKFGVPQIQVTDHEVLEGDEGMHSGRIVPIYPLTESLNQRFLRSLIKTTLEQVGSLA 175

Query: 187 -EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E++   +L + + P + EA   IH P      +     R R   +EL   ++ + L + 
Sbjct: 176 REFLPDSMLDRYNLPCLPEALREIHFPENQASCQRA---RRRFIMEELFLFELGVNLQKG 232

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           +  K++     +E  ++ ++L ++PF  T++Q+   ++I +D+     M R+LQGDVG+G
Sbjct: 233 RILKKVKKHEYIEEALSNRLLMSLPFRLTEAQKRVWREIEEDLKSSFPMNRLLQGDVGAG 292

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT++A + +  A  +G Q  +MAP  +LA+QH + IK   +   I V ++TG+  +  R+
Sbjct: 293 KTVIAALTLCKAAGSGLQGALMAPTELLAEQHAKGIKDLLEPMGIKVALLTGSGKKG-RK 351

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           K L+ +A G   + IGTHAL  + +QY  L LV+VDEQHRFGV+QR  L  K  AP VL+
Sbjct: 352 KTLDALASGDIQVAIGTHALISEDVQYKNLGLVVVDEQHRFGVRQRAALQDKGVAPDVLV 411

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL LT  GD+D+S I + P GR+ IKT  + + +  + +  +K  ++EG++A
Sbjct: 412 MTATPIPRTLALTLYGDLDVSIIDQLPPGRQGIKTHHVGLAQAGKAVGLIKQQITEGRQA 471

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           Y +CP +EE ++ + ++ VE    L +     SI ++HGRM   +KE VM+ F+ GT  L
Sbjct: 472 YVVCPLVEESEKIDTQAAVELHGRLQKALVDCSIGLLHGRMKTQEKELVMNEFRKGTIDL 531

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG+DV +A+ ++I +A+ FGLAQLHQLRGRVGRG   S CIL+  P  ++ +
Sbjct: 532 LVSTTVIEVGVDVPNATAMVIWDAQRFGLAQLHQLRGRVGRGSHQSYCILVGDPT-TREA 590

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R++ +  T+DGF++AEEDLK R  GE  G +QSG+P+F IA    +   +E A+K+A+
Sbjct: 591 KERMAAMCRTQDGFVLAEEDLKLRGPGEFFGTRQSGLPEFKIADLIRNGKEIEQAKKEAE 650

Query: 665 HILTQDPDLTSVRGQSI 681
            +L+ +PDL S   + +
Sbjct: 651 ALLSLNPDLRSPMHKQL 667


>gi|166713265|ref|ZP_02244472.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 717

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 250/700 (35%), Positives = 380/700 (54%), Gaps = 36/700 (5%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           PS      APLS+  GVG K +   +              DL  + P  + DR     I+
Sbjct: 9   PSLAVAGQAPLSSLPGVGPKVADKFA------ARGILSVQDLWLHLPLRYEDRTRLTTIA 62

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGR 121
           ++       I G +        + R   ++ ++D + G + L FF+ +   +   F  G 
Sbjct: 63  QLQSGVPAQIEGRVDAVER-GFRFRPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FAVGT 120

Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEAL 179
           ++ V G  K  +N   +VHP Y +    +D      ++ VY +  G+     +K+I +AL
Sbjct: 121 RVRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIGQAL 180

Query: 180 SRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDEL 233
            RLP     E +    LQ +  PS+  A   +H P    D         PA++RLA +EL
Sbjct: 181 ERLPPEAALELLPPHWLQDEQLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQQRLAIEEL 240

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA Q++L   R   ++     +   G + Q++   +PF  T +Q+   + I +D++Q + 
Sbjct: 241 LAHQLSLRRQRIALQRFHAPSLPGNGTLVQQLRGALPFQLTGAQQRVFEQIARDLAQSSP 300

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + +   I + 
Sbjct: 301 MLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRDWLEPLGIRIV 360

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    R  A+  +A GQA +++GTHAL Q+++ ++ L L I+DEQHRFGV QRL 
Sbjct: 361 WLAGKVTGRARAAAMADVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHRFGVHQRLA 420

Query: 414 LTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L  K       PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+++   R  
Sbjct: 421 LRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTIVLSAERRP 480

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE--------------RFNSLHEHFT 515
           E++ER++   +EG++AYW+C  IEE +E    +  +               F +L     
Sbjct: 481 ELVERIRAACAEGRQAYWVCTLIEESEEPEKGARGQHGGPPRIEAQAAEVTFEALSAQLP 540

Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIENAE  GLA
Sbjct: 541 GVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGLA 600

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+ R  GE+L
Sbjct: 601 QLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLELRGPGELL 660

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           G +Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 661 GTRQTGLASFRIADLARDAGLLPRVQVVAERLLEEAPEIA 700


>gi|320157694|ref|YP_004190073.1| ATP-dependent DNA helicase RecG [Vibrio vulnificus MO6-24/O]
 gi|319933006|gb|ADV87870.1| ATP-dependent DNA helicase RecG [Vibrio vulnificus MO6-24/O]
          Length = 673

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 258/683 (37%), Positives = 393/683 (57%), Gaps = 29/683 (4%)

Query: 23  YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF 82
            +  L KI        +   DLLF+ P  + DR     I+++       + G + Q  + 
Sbjct: 1   MAEKLEKI------GLSSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGNVMQVDTL 54

Query: 83  QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142
              KR+   + L+DG G ITL FF   T  +KN F EG+ +   G+IK+    + +VHP 
Sbjct: 55  -FGKRKMLTVKLSDGNGTITLRFFNF-TAAMKNNFAEGKLVHAYGEIKRGNMGLEIVHPD 112

Query: 143 YIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPEWIEKDLLQKKS 198
           Y F     +      +  VY    GL     + +  +AL+ L    + E +   L  ++ 
Sbjct: 113 YKFFAPTQKPDVEQSLTPVYPTTDGLRQITLRNLTDQALALLDKAAVQELLPAGLYDQQ- 171

Query: 199 FPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
             ++ +A +IIH P    + E       PA+ RL  +ELLA  +++L +R + ++++ +P
Sbjct: 172 -LTMGQALHIIHRPSPEINLELFDEGKHPAQVRLIMEELLAQNLSMLAVRSKGQQDVALP 230

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +    ++ Q++L  +PFSPT +Q   +++I +DM + + M+R++QGDVGSGKTLVA +A 
Sbjct: 231 LPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDMQKAHPMMRLVQGDVGSGKTLVAALAA 290

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E G Q  +MAP  +LA+QH      + +   I V  + G +    +   L RIA G
Sbjct: 291 VRAIEHGYQVALMAPTELLAEQHAINFANWFEKMGIPVGWLAGKLKGKAKEAELARIASG 350

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KATAPHVLLMTATP 430
           +A +++GTHALFQ+ + +  L LVI+DEQHRFGV QRL+L +    +   PH L+MTATP
Sbjct: 351 EAKMVVGTHALFQEHVVFDHLALVIIDEQHRFGVHQRLELREKGAKQGAYPHQLIMTATP 410

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAYWIC 489
           IPRTL +T+  D++ S I E P GR PI+TV IP  + ++++ER++   L+EGK+AYW+C
Sbjct: 411 IPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERIRHACLNEGKQAYWVC 470

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             I+E +    ++  E    L        I ++HGRM   +K++VM +FKN    LL+AT
Sbjct: 471 TLIDESEVLEAQAAAETAEELQRKLPDVRIGLVHGRMKPAEKQAVMQAFKNNELHLLVAT 530

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH PLSK +  RL
Sbjct: 531 TVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRL 590

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           SVL+ + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+   ++ A++I  
Sbjct: 591 SVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQRLIPEVQRAARYIHH 650

Query: 669 QDPDLTSVRGQSIRILLYLYQYN 691
             P     +  +  I  +L + +
Sbjct: 651 NYP-----QNAAAIIERWLGERD 668


>gi|54297960|ref|YP_124329.1| ATP-dependent DNA helicase RecG [Legionella pneumophila str. Paris]
 gi|53751745|emb|CAH13167.1| ATP-dependent DNA helicase RecG [Legionella pneumophila str. Paris]
          Length = 690

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 246/669 (36%), Positives = 374/669 (55%), Gaps = 24/669 (3%)

Query: 14  STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73
               GVG   +  L+K             DLLF+ P  + DR     I ++       I 
Sbjct: 7   EYLTGVGPTIAAKLAK------CGIFTIQDLLFHLPYKYQDRTRITPIQDLRSNEWCVIA 60

Query: 74  GYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
           G++ + +  +  KR      + D TG + L FF+   + +         I   G+++   
Sbjct: 61  GHVCK-TEIKYGKRMMLNCYVEDKTGVVKLRFFHFNKQQI-QALNNSTMIRAFGEVRGFN 118

Query: 134 NRIIMVHPHYIFHNSQDV--NFPLIEAVYSLPTGLSVDLFKKIIVEALSR----LPVLPE 187
           N++ M+HP Y   + +        +  +Y    GL+    ++++  AL +    L  L E
Sbjct: 119 NQLEMIHPEYQLIDQESDFHVEETLTPIYPSTQGLTQTRLRQLVKIALEQSEHELHQL-E 177

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
           W+ +  LQ+ +F  + EA  ++HNP              PA +RL +DELLA Q+++   
Sbjct: 178 WMSEKQLQENNFYDLGEAIKLLHNPPPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFA 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+   K     I  +  I ++ + ++PFS T +Q+   K+I  D++Q   MLR+LQGDVG
Sbjct: 238 RQSRSKLQAPAILFDNAIHKRFIESLPFSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT++A +A   A+  G Q   MAP  +L++QH   + K+ +   I V  ++G M    
Sbjct: 298 AGKTIIAALAALQAISQGFQVAFMAPTDLLSEQHTNSLSKWLEPIGINVLRLSGKMKATE 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R+ AL  +      +I+GTHALFQ+ +++  L LVI+DEQHRFGV+QRL L QK      
Sbjct: 358 RKNALAALQDNSCQLIVGTHALFQEQVEFACLGLVIIDEQHRFGVEQRLLLQQKGQLNQL 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH LLMTATPIPRTL ++    +DIS I E P GR PI T ++  ++ + +IERL+  +
Sbjct: 418 IPHQLLMTATPIPRTLSMSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAI 477

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
           + GK+AYW+C  IEE ++    +  +    L E    + + ++HGRM  ++KE+ M +FK
Sbjct: 478 ANGKQAYWVCTLIEESEKLQCIAATDTSKKLQEQLSFARVGLVHGRMKALEKEATMAAFK 537

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+LLY  
Sbjct: 538 QGEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQS 597

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+    RL ++++T DGFLI+E+DL+ R  GEILG +Q+G  +F IA  +   +L  I
Sbjct: 598 PLSQQGAERLKIMRSTTDGFLISEKDLELRGSGEILGTRQTGFRQFKIANLQRDKTLFTI 657

Query: 659 ARKDAKHIL 667
            R  AK ++
Sbjct: 658 LRPIAKQLV 666


>gi|228477237|ref|ZP_04061875.1| ATP-dependent DNA helicase RecG [Streptococcus salivarius SK126]
 gi|228251256|gb|EEK10427.1| ATP-dependent DNA helicase RecG [Streptococcus salivarius SK126]
          Length = 676

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 232/672 (34%), Positives = 373/672 (55%), Gaps = 30/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  +G G K +   +K+      +     DLL Y P  + D      I E+ +  
Sbjct: 8   LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYEDF-KSKSIFELMDGE 60

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      +  G   I + FF +    L +    G ++ + 
Sbjct: 61  KAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAISFFNQ--PYLVDKIEMGAEVAIF 118

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPV 184
           GK  + K+ +  +    +    +D     ++ VY +  G+S     K I  A     L +
Sbjct: 119 GKWDQKKSAVTGMK---VLAQVEDD----MQPVYHVAQGVSQAQLIKAIKAAFDSGALNL 171

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + L+ K       EA   +H P   KD      A  R  ++EL   Q+ L +++
Sbjct: 172 LEESLPQVLMDKYRLMGRQEAVRAMHFP---KDLAEYKQALRRTKFEELFYFQMNLQVLK 228

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E   + I  +    +  +  +PF  T++Q+ ++ +IL DM     M R+LQGDVG
Sbjct: 229 AENKSETNGLAIAYDEAKIKAKIAELPFPLTEAQQRSLSEILADMKSGAHMNRLLQGDVG 288

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A +AM  A  AG Q+ +M P  ILA+QHY+ ++      ++ V ++T  M  A 
Sbjct: 289 SGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSLQGLF--PELEVVLLTSGMKAAD 346

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++ AL +I  G+A +I+GTH+L QD++ Y++L LVI DEQHRFGV QR    +K   P V
Sbjct: 347 KKVALSKIESGEAQMIVGTHSLIQDAVTYHRLGLVITDEQHRFGVNQRRIFREKGDNPDV 406

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I + PAGRKPI T  +   ++D  +  +K  L +  
Sbjct: 407 LMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTALTWIKGELEKDA 466

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
           + Y+I P IEE +  + ++ V     L +    S  +A++HGRM + +K+ +M  FK+  
Sbjct: 467 QVYFISPLIEESEALDLKNAVALHQELTDFLGDSATVALMHGRMKNDEKDQIMQDFKDKK 526

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S C+L+ +P  +
Sbjct: 527 SQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGHKQSYCVLVANPK-N 585

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                R+  +  T DGF++AEEDLK R  GEI G +QSG+P+F +A      ++LE AR+
Sbjct: 586 DTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARR 645

Query: 662 DAKHILTQDPDL 673
            A  I++ DP+ 
Sbjct: 646 VASQIVS-DPNW 656


>gi|307288878|ref|ZP_07568851.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0109]
 gi|306500150|gb|EFM69494.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0109]
 gi|315164405|gb|EFU08422.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1302]
          Length = 678

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 226/694 (32%), Positives = 374/694 (53%), Gaps = 30/694 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            DLL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIVTIEDLLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  ++          I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      ++ E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFA---PIYHVNKKVRQSTLVQLIRTAFEEYGSLIEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K       EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMPRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + I  +    +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAIQYDVDRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL+
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASAL 648

Query: 667 --LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             + +     + +G + R+       +EA QF  
Sbjct: 649 WKVKEWWQYPAYQGLANRVK----PQDEAVQFFD 678


>gi|86610232|ref|YP_478994.1| ATP-dependent DNA helicase RecG [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558774|gb|ABD03731.1| ATP-dependent DNA helicase RecG [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 837

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 241/684 (35%), Positives = 390/684 (57%), Gaps = 29/684 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL   +G+G K +  L+++            D L+Y P  ++D   R  I +     
Sbjct: 140 LEQPLQFLKGIGPKSAEKLAQL------GLHSVRDALYYFPRDYLDYSRRVLIRQAKVGE 193

Query: 69  IVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEM--------LKNVF 117
            VT+ G +   S F   K     I    + D +G ITL  FY   +         L+  +
Sbjct: 194 TVTLVGTVKSCSCFTSPKNPSLTIFNLKIADKSGVITLSRFYSGRQFAQRSWQASLERQY 253

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF---PLIEAVYSLPTGLSVDLFKKI 174
            +G  +  +G +KK +  + + +P       +         I  VY L  G+  DL +K 
Sbjct: 254 PKGALVAASGLVKKGRLGLTLDNPQLEVLGGEGEELDRLGKILPVYPLSEGIPADLVRKA 313

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           +  AL    ++ + +  DL ++     +  A   IH P      E  + AR RL +DE  
Sbjct: 314 VQLALPAAALVEDPLPADLKRQLQLLDLPVALQQIHFPETR---ELLAQARRRLVFDEFF 370

Query: 235 AGQIALLLMRKQFKKEIGIPINVE---GKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
             Q++LL  R +++ +       +   G++  +  + +PF  T +Q+ AI +IL D+   
Sbjct: 371 YLQLSLLQRRHRYRAQAQAIPRYQPARGELLDRFYQILPFQLTAAQQRAIDEILADLRDP 430

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R+LQGDVGSGKT+VA+ A+ AA+++G QA +MAP  +LA+QHY  + ++    Q+ 
Sbjct: 431 LPMNRLLQGDVGSGKTVVAVAAVLAAIQSGWQAALMAPTEVLAEQHYRKLVEWLSQLQVP 490

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++TG+ P A RR+ L ++  G+  +++GTHAL Q ++Q+  L LV++DEQHRFGV+QR
Sbjct: 491 VELLTGSTPPAKRREILRQLQTGELPLVVGTHALIQPAVQFRNLGLVVIDEQHRFGVEQR 550

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             L QK   P VL MTATPIPRTL L   GD+D+++I E P GRKP+ T++       +V
Sbjct: 551 AALQQKGDHPDVLTMTATPIPRTLTLALHGDLDVTQIDELPPGRKPVHTLVARPGDRLQV 610

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDID 529
           +  ++  +++G++AY + P IEE ++ + +S +E    L E       ++++HGR++  +
Sbjct: 611 MRLIEREIAQGRQAYVVLPLIEESEKLDLKSAIEEHQRLQEKVFPQFRVSLLHGRLTSSE 670

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE+V+ +F+     +L++TTV+EVG+DV +AS++++E+AE FGL+QLHQLRGRVGRG + 
Sbjct: 671 KEAVIAAFRRRELDILVSTTVVEVGVDVPNASVMLVEHAERFGLSQLHQLRGRVGRGSDQ 730

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           + CIL+     S+ +  RL VL+ + DGF IAE DL+ R  GE++G +QSG+P F +A  
Sbjct: 731 AYCILMTGSK-SEEALRRLKVLEQSHDGFFIAEMDLRFRGPGEVMGTRQSGLPDFALASL 789

Query: 650 ELHDSLLEIARKDAKHILTQDPDL 673
                +L++AR+ A+ ++ QDPDL
Sbjct: 790 MEDQEVLQLARQAAEQLIVQDPDL 813


>gi|322388803|ref|ZP_08062400.1| DNA helicase RecG [Streptococcus infantis ATCC 700779]
 gi|321140422|gb|EFX35930.1| DNA helicase RecG [Streptococcus infantis ATCC 700779]
          Length = 671

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 242/687 (35%), Positives = 379/687 (55%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHRPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGVSQAGLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E I + LL K      ++A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENIPQSLLDKYKLMPRSQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K    G+ +N   +    +   +PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NKVHGSGLVLNWSQEKLTAVKEKLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTAVAGLAMYAAVTAGYQAALMVPTEILAEQHFESLESLF--PDLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 RVLETIAKGEADVIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGENPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G + 
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAKVALLHGKMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G KQSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTKQSGLPEFHVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I +            I + L   +Y
Sbjct: 643 SYISSLPNWREDPEWHMIALHLEKKEY 669


>gi|325268173|ref|ZP_08134806.1| DNA helicase RecG [Prevotella multiformis DSM 16608]
 gi|324989315|gb|EGC21265.1| DNA helicase RecG [Prevotella multiformis DSM 16608]
          Length = 698

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 237/680 (34%), Positives = 375/680 (55%), Gaps = 22/680 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++ L   +   +GVG +    LS+ +         + DLL Y P  ++DR     ISE+S
Sbjct: 1   MDILSQDIMYLQGVGPRKKEILSREL-----GIRTYRDLLEYFPYKYVDRTKVYLISELS 55

Query: 66  EERI-VTITGYISQHSSFQLQKRRPYKI-LLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            +   V I G I +    +  KRR   I    DG G   L++F   T+ +   +   R+ 
Sbjct: 56  PDMPFVQIKGRIIRFEETETGKRRKRVIAHFTDGHGICDLVWFN-GTKYVYQNYQLNREY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEA 178
            V GK      RI   HP         +N   ++  Y         G++    +K+    
Sbjct: 115 VVFGKPGVFNGRIQFSHPDIDDAAQLQLNDMGMQPFYITTEKMKKAGITSRAVEKLTKTL 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + +L   L E +   +       S   A   IH PR   D   T  AR RL ++EL   Q
Sbjct: 175 IGKLSEPLEETLPPFITSHLHLISRDAALRKIHYPRSVDD---TQRARVRLKFEELFYVQ 231

Query: 238 IALLLMRK-QFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L       +K  G   N  G         N+PF  T +Q+  + +I  DM+   +M 
Sbjct: 232 LNILRYASDHRRKYRGYIFNRIGAQFNWFYTHNLPFELTGAQKRVMHEIRADMAGGRQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA+QH + ++ + +   + +E++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLIAIDNGYQACMMAPTEILAEQHLQTLRNFLKGMNLRIELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG +    RR+ L+ +  G  HI++GTHAL +D +Q+++L + +VDEQHRFGV QR +L 
Sbjct: 352 TGIIKGKRRREVLDGLMDGSIHIVVGTHALLEDKVQFHRLGMAVVDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    +++  +   
Sbjct: 412 GKSENPPHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTLHKYDDQMPSLYNG 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  +  G++ Y + P I+E +  + +++ + F +L + F    ++ +HG+M D +KE+ 
Sbjct: 472 IRQQIHLGRQVYIVYPLIKESERMDLKNLEDGFAALCDIFPEFRLSKVHGKMKDKEKEAE 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CI
Sbjct: 532 MQKFVSGQTQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+    L+K +  R+ ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTSHRLTKETSRRIDIMCETNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQDPD 672
             ++++AR++A+ I+  DPD
Sbjct: 652 GQIVQMAREEAQKIIDDDPD 671


>gi|282879459|ref|ZP_06288196.1| ATP-dependent DNA helicase RecG [Prevotella buccalis ATCC 35310]
 gi|281298431|gb|EFA90863.1| ATP-dependent DNA helicase RecG [Prevotella buccalis ATCC 35310]
          Length = 700

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 232/677 (34%), Positives = 367/677 (54%), Gaps = 23/677 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE- 67
           L   +    GVG K    L K      AN   + DLL Y+P  ++DR    +I ++  + 
Sbjct: 5   LEQDIKYLPGVGPKRKAILEKE-----ANIATWGDLLEYYPYKYVDRSRIYRIIDLQGDL 59

Query: 68  RIVTITGYISQHSSFQLQKRRPYKI-LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             V + G I     F +  R+   +   +DGTG   L++F + T+ +   +    +  V 
Sbjct: 60  PFVQLKGKILSFEEFTMSPRKKRVVAHFSDGTGIADLVWF-QGTQYVYKNYKVNEEYIVF 118

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALSR 181
           G+      R    HP         ++   ++  Y         GL     +K+    + +
Sbjct: 119 GRPTIYGGRYQFAHPDIDKAADIQLSEMGMQPYYMATERMKKSGLQSHAIEKLTKTLVDK 178

Query: 182 LPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           L    L E +   +       S AEA   IH P+   D +     + RL ++EL   Q+ 
Sbjct: 179 LGENDLSETLPPFITGPLHLISRAEAMAKIHYPKSLDDVQRA---QLRLKFEELFYVQLN 235

Query: 240 LL-LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +L     + +K  G   N  G       +N +PF  T +Q+  + +I +DM+   +M R+
Sbjct: 236 ILRYANDRKRKYQGYVFNHVGPQFHHFYKNNLPFELTNAQKRVMHEIRKDMTTGRQMNRL 295

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKTLVAL++M  A++ G QA +MAP  ILA+QH+  IKK+     + VE++TG
Sbjct: 296 VQGDVGSGKTLVALMSMLIAIDNGYQACMMAPTEILAEQHFATIKKFLGGMDVRVELLTG 355

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-Q 416
            +    R +    +  G+ HI++GTHA+ +D++++  L + +VDEQHRFGV QR KL  +
Sbjct: 356 MVKGKKRNEVFHGLLTGEVHILVGTHAVIEDNVRFSHLGMAVVDEQHRFGVAQRAKLWGK 415

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N++  + + ++
Sbjct: 416 SERPPHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHQYDNQMTSLYQGIR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             + +G++ Y + P I E ++ + +++   F SL   F    ++ +HG+M   +K++ M 
Sbjct: 476 KQIQQGRQVYIVFPLITESEKIDLKNLEAGFESLCTIFPDFKLSKVHGKMKPKEKDAEMQ 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F  G  ++L+ATTVIEVG+DV +AS+++I +A  FGL+QLHQLRGRVGRG E S CIL+
Sbjct: 536 KFSRGETQILVATTVIEVGVDVPNASVMVILDAHRFGLSQLHQLRGRVGRGAEQSYCILV 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDS 654
               LSK +  R+ ++  T DGF IAE DLK R  G++ G +QSG+     IA       
Sbjct: 596 TSHKLSKETRRRIDIMCETCDGFQIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQ 655

Query: 655 LLEIARKDAKHILTQDP 671
           ++++AR +A+ I+  DP
Sbjct: 656 IIQLARDEAQKIIEADP 672


>gi|269926755|ref|YP_003323378.1| ATP-dependent DNA helicase RecG [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790415|gb|ACZ42556.1| ATP-dependent DNA helicase RecG [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 786

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 237/693 (34%), Positives = 374/693 (53%), Gaps = 21/693 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+S+  GVG++ +    ++            D L Y+P  + DR    KI+E+    
Sbjct: 106 LEKPISSMPGVGQRRAALFGRL------GIHLIRDALEYYPREYHDRSNLRKIAELQFGN 159

Query: 69  IVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             T    + + S  +L          L D TG I   +F R    ++     G +I VTG
Sbjct: 160 TETFIAKVKEVSVRKLSNNLNLLTARLQDETGFIDATWFSRG--FVRRDLEPGMEIIVTG 217

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LP 186
           K+ +   ++ +  P Y   +   ++   I  +Y    GL+  L + +I + ++   V + 
Sbjct: 218 KVGQFLGKLKVESPEYEHLDKSLLHSGRIVPIYRSTEGLNNKLLRSVIHDIVAYHSVRIE 277

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245
           + + + L+ + S   + +A   IH P      E     R RLA+DE L  Q+  L+ +  
Sbjct: 278 DHLPQHLIDELSLLDLGDALYQIHFPDSWDQLEAA---RRRLAFDEFLEIQLGALMKQAV 334

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + + +  + ++V      + L N+PF  T +QE  I++I+ D+     M R+LQGDVGSG
Sbjct: 335 RRRSKGALALDVRKPQIGEFLTNLPFRLTGAQERVIQEIMHDLESDVPMNRLLQGDVGSG 394

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK---YTQNTQIIVEIITGNMPQA 362
           KT+VA  A+  A   G Q  IMAP  ILA+QHY+ I +           V ++TG++   
Sbjct: 395 KTVVAASALITAFANGYQGAIMAPTEILAEQHYKGISRLVSVLGEDAPKVSLLTGSIKGK 454

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R    + +  G+  I+IGTHAL Q+ +++  L + +VDEQHRFGV+QR  L  K   PH
Sbjct: 455 ERDDLYQAVEQGEIDILIGTHALIQEGVRFNNLAVCVVDEQHRFGVEQRAALRAKGVNPH 514

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+MTATPIPR+L LT  GD+D+S + E P GR+PI+T  +   +       L+  +  G
Sbjct: 515 LLVMTATPIPRSLALTIYGDLDLSVLDEMPPGRQPIQTFALTPEQRSWAYNFLREEVERG 574

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNG 540
           ++AY ICP +EE ++   ++ +E +  L ++      + ++HGRM   +K+ VM+ F+ G
Sbjct: 575 RQAYIICPLVEESEKIEAKAAIEEYERLQKYVFPDLRLGLLHGRMKPREKDEVMERFRLG 634

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L++T V+EVGIDV +A++++IE A+ FGLAQLHQ RGRVGRG E S C+LL   P 
Sbjct: 635 ELQVLVSTAVVEVGIDVPNATVMLIEGADRFGLAQLHQFRGRVGRGTEKSYCLLLSDSP- 693

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+++  RL +++   DGF++AEEDLK R  GE  GI+QSG     +A+      LLE  R
Sbjct: 694 SEDARKRLEIVQECSDGFVLAEEDLKMRGPGEFYGIRQSGQINLKVAKLS-DFGLLEETR 752

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           K A  +L  DPDL        R++  +   +EA
Sbjct: 753 KIAAELLEDDPDLRHYPKLRSRVVERMKTLSEA 785


>gi|147669719|ref|YP_001214537.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. BAV1]
 gi|146270667|gb|ABQ17659.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. BAV1]
          Length = 818

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 226/701 (32%), Positives = 369/701 (52%), Gaps = 37/701 (5%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L   +S  +G+    +    K+            DLL+Y P+  +D     KIS++ 
Sbjct: 117 LPALDGDVSLVKGISAATAPKFHKL------GVNTVRDLLYYFPNRHLDYSRLKKISQLE 170

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
                TI   + Q     +  RR  + +L D TG +  ++F      +        ++ +
Sbjct: 171 AGPEQTIIANVWQSKVNFMSGRRSTEAVLGDDTGNMRAVWFNN--PYMVRNLKPNARVVL 228

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RL 182
           +G++   + R +   P +     +   ++   +  VY L  GL     ++++   +    
Sbjct: 229 SGRVSIFQGRPVFESPEWEELPDEADLIHTGRLVPVYPLTAGLHQRSLRRLMKNFIDISS 288

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
           P + +++  + L++     ++EA    H P    D E  + AR RLA+DEL   Q+ +L 
Sbjct: 289 PNISDFMPAETLKRTRLLPLSEAIRQAHFP---DDEELKNAARNRLAFDELFILQLGVLA 345

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +K++ ++ G  +NV      + +  +PF  T +Q   + DI  D+S+   M R+LQG+V
Sbjct: 346 KKKRWHEQAGRALNVNIPDIDRFVSKLPFKLTDAQTKCLADIKADISKGVPMSRLLQGEV 405

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-------------- 348
           GSGKT+VA+I++  A   G Q   MAP  ILA+QH++ + +   +               
Sbjct: 406 GSGKTIVAVISLFTAASNGLQGAFMAPTEILAEQHFKSVTRLFASIARVSTLLDGIYTFE 465

Query: 349 -----QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                 + V ++  +M  + +    E+I  G+  I IGTHAL Q  I++  L L ++DEQ
Sbjct: 466 GLLDRPLKVALLISDMKGSQKDILKEKIKKGEVDIAIGTHALIQKEIRFKSLGLAVIDEQ 525

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           HRFGV+QR  L  K   PH+L+MTATPIPRTL LT  GD+D+S I E P GR+ IKT  +
Sbjct: 526 HRFGVEQRSALRSKGLNPHILIMTATPIPRTLALTLYGDLDLSVIDELPPGRQSIKTRWL 585

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAII 521
              + +     ++  + EG++A+ ICP +EE +    ++    + +L       S +A++
Sbjct: 586 KPEQRNSAYTFIRKQIQEGRQAFIICPLVEESEVIQAKAATAEYETLSREVFPESRVALL 645

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HGRM+  +KE++M  F  G   +L++T VIEVGID+ +A+++++E+A+ FGL+QLHQ RG
Sbjct: 646 HGRMNASEKETIMRHFSEGEMDILVSTPVIEVGIDIPNAAVMLVESADRFGLSQLHQFRG 705

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           RVGRG E S C+ L   P S     RLS++++T+DGF +AEEDL+ R  GE  G +QSG+
Sbjct: 706 RVGRGTEQSYCMFLAENP-SLLGQERLSIIESTQDGFKLAEEDLRLRGPGEFFGTRQSGL 764

Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           PK  +A       LLE ARK+A  +   DP+L+      + 
Sbjct: 765 PKLRMASIS-DVGLLEQARKEATRLFELDPELSLPENAPLE 804


>gi|254448948|ref|ZP_05062403.1| ATP-dependent DNA helicase RecG [gamma proteobacterium HTCC5015]
 gi|198261485|gb|EDY85775.1| ATP-dependent DNA helicase RecG [gamma proteobacterium HTCC5015]
          Length = 700

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 254/690 (36%), Positives = 395/690 (57%), Gaps = 32/690 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L A ++ F+GVG   +  L+++            D+LF+ P  + DR     I  +    
Sbjct: 3   LTASVTQFKGVGPALAEKLARLP------IHTVQDVLFHLPLRYQDRTRVTPICALQHGA 56

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            V + G   +H+   +++RR   + L+DGTG + L FFY      KN    G +I   G+
Sbjct: 57  EVVVEGE-VEHAEIVIRRRRQMLVQLSDGTGSLVLRFFYFSQAQ-KNALERGTRIRCFGE 114

Query: 129 IKKLK-NRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP--V 184
            ++    R  MVHP Y +           +  +Y    G+S  + +K+  +AL  +   +
Sbjct: 115 ARETALGRFEMVHPEYRYGEQAATPMETALTPIYPATDGVSQSVLRKLTDQALEHVDTGL 174

Query: 185 LPEWIEKDLLQKKSF--PSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQI 238
           LP+ I  D L       P++ EA +++H P         +    PA++RLA++ELLA Q+
Sbjct: 175 LPDLIPADCLPPSLLNVPTLGEALHLLHRPPPTVSLAALAQGGNPAQQRLAFEELLAHQL 234

Query: 239 ALLLMRKQFKKEIGIPINVEGKI--------AQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           ++LL+R++ + E  +PI    +          ++ ++ +PF  T++Q+  +K+I  D+++
Sbjct: 235 SMLLLRQRVQSETAVPIGTNTETGAPSQNTLRRQFMQALPFQLTQAQQRVVKEIDTDIAR 294

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
               LR++QGDVGSGKT+VA +A+ AAVE G QA +MAP  +LA+QH++ +  + +   I
Sbjct: 295 DWPSLRLVQGDVGSGKTVVAALALLAAVECGQQAAMMAPTELLAEQHWQTLSAWFEPLGI 354

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V  ++  +  A RR+ L  +A G   +++GTHALFQ+ + + +L L++VDEQHRFGV Q
Sbjct: 355 RVGWLSSRVKGAKRRQTLAELASGDVALVVGTHALFQEEVIFQRLALLVVDEQHRFGVHQ 414

Query: 411 RLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           RL L +K       PH ++MTATPIPRTL +T+  D+D S I E P GR PIKTV +  +
Sbjct: 415 RLALREKGQNSGISPHQVIMTATPIPRTLAMTAYADLDYSVIDELPPGRTPIKTVALAES 474

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
           R  +VIER++    +G++ YW+C  IEE +    ++  +  +SL E   +  I ++HGRM
Sbjct: 475 RRADVIERIRSACEQGRQVYWVCTLIEESEMVQCQAAEDTASSLAEAMPAVRIGLVHGRM 534

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              DKE  M  FK G   LL+ATTVIEVG+DV +AS+++IENAE  GL+QLHQLRGRVGR
Sbjct: 535 KPADKERTMAQFKAGDIDLLVATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRVGR 594

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
           G   SSC+LLY  PL + +  RL  ++ + DGF IA EDL  R  GE+LG +Q+G   F 
Sbjct: 595 GAVESSCVLLYKNPLGEKARRRLDTMRRSNDGFEIAREDLDMRGPGEVLGTRQTGDMSFR 654

Query: 646 IAQPELHDSLLEIARKDA-KHILTQDPDLT 674
           +A     + L++   + A   I  + P++ 
Sbjct: 655 VADLTRDEHLVDAIHQLAGDWIEQRHPNIQ 684


>gi|150390531|ref|YP_001320580.1| ATP-dependent DNA helicase RecG [Alkaliphilus metalliredigens QYMF]
 gi|149950393|gb|ABR48921.1| ATP-dependent DNA helicase RecG [Alkaliphilus metalliredigens QYMF]
          Length = 686

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 238/677 (35%), Positives = 375/677 (55%), Gaps = 17/677 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +   +GVG K +  L ++      N     ++L++ P  + DR    K+S +     VTI
Sbjct: 9   IQFIKGVGPKKAARLKRL------NIETVQEMLYHFPRDYDDRRNTKKVSHLVAGEKVTI 62

Query: 73  TGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G I +       ++     K+ + D TG ++++FF +    LK     G ++ V GK+K
Sbjct: 63  YGRIIEEPQISKIRKGLSLTKVKMRDDTGSVSVIFFNQ--PFLKKNLTMGTEVMVNGKVK 120

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
                + + +P Y    S +    +I  +YS   GL+     ++  + LS +   PE++ 
Sbjct: 121 VGYKGLEITNPVYERVESANSEAQVI-PIYSTTEGLTQKEIYRMQKQLLSTIKEFPEFLP 179

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           +++++K     +  A   IH P+  +D      A+ RL +DE     ++LL ++KQFKK+
Sbjct: 180 EEIIKKNRLCDLRFALCGIHFPKTTQDL---KVAKYRLVFDEFFLLNLSLLSIKKQFKKQ 236

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
                        + ++ +PF  T +Q   + +I  D+ +   M R++QGDVGSGKT+VA
Sbjct: 237 KSSIALHIKDDVYEFIQGLPFRLTSAQRKTLDEIFDDIQRTTPMNRLVQGDVGSGKTIVA 296

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           + A+   V  G Q  +MAP  ILA+QHYE +K+      I V ++ G+M + ++ + LER
Sbjct: 297 VCALLNCVLNGYQGAMMAPTEILAEQHYEALKELLSPLNIEVGLLVGSMTKKNKERLLER 356

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           IA G+  I+ GTHAL Q+ + ++ L L + DEQHRFGV+QR  L  K   PH+L+MTATP
Sbjct: 357 IAKGEVQIVTGTHALIQEGVVFHNLALAVTDEQHRFGVRQRASLMNKGANPHILVMTATP 416

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL L   GD+DIS I E P GRK IKT      + ++V   +K  L  G++AY +CP
Sbjct: 417 IPRTLALIVYGDLDISTIDELPPGRKSIKTFSASKKKREDVYTFIKKELDNGRQAYVVCP 476

Query: 491 QIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +EE +     S  E              + ++HG+M   +KE+VM++FK     +L++T
Sbjct: 477 LVEESESIEAESATEIATLFSHTIFKSYRVGLLHGKMPSKEKETVMNAFKRKEIDILVST 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG+  S CIL+ H   S  +  R+
Sbjct: 537 TVIEVGVNVPNATVMIIENAERFGLAQLHQLRGRVGRGDSQSYCILI-HNSKSDIAKERM 595

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            +++ T DGFLI+E+DL+ R  GE  GI+Q G+P+  IA    H  +L+I ++  K ++ 
Sbjct: 596 KIMEKTTDGFLISEKDLELRGPGEFFGIRQHGLPELKIANLFKHIKILKIVQQQIKELIE 655

Query: 669 QDPDLTSVRGQSIRILL 685
            D +       ++   L
Sbjct: 656 VDFEGFLKEHPALEKKL 672


>gi|73748952|ref|YP_308191.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. CBDB1]
 gi|73660668|emb|CAI83275.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. CBDB1]
          Length = 740

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 226/701 (32%), Positives = 369/701 (52%), Gaps = 37/701 (5%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L   +S  +G+    +    K+            DLL+Y P+  +D     KIS++ 
Sbjct: 39  LPALDGDVSLVKGISAATAPKFHKL------GVNTVRDLLYYFPNRHLDYSRLKKISQLE 92

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
                TI   + Q     +  RR  + +L D TG +  ++F      +        ++ +
Sbjct: 93  AGPEQTIIANVWQSKVNFMGGRRSTEAVLGDDTGNMRAVWFNN--PYMVRNLKPNARVVL 150

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RL 182
           +G++   + R +   P +     +   ++   +  VY L  GL     ++++   +    
Sbjct: 151 SGRVSIFQGRPVFESPEWEELPDEADLIHTGRLVPVYPLTAGLHQRSLRRLMKNFIDISS 210

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
           P + +++  + L++     ++EA    H P    D E  + AR RLA+DEL   Q+ +L 
Sbjct: 211 PNISDFMPAETLKRTRLLPLSEAIRQAHFP---DDEELKNAARNRLAFDELFILQLGVLA 267

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +K++ ++ G  +NV      + +  +PF  T +Q   + DI  D+S+   M R+LQG+V
Sbjct: 268 KKKRWHEQAGRALNVNIPDIDRFVSKLPFKLTDAQTKCLADIKADISKGVPMSRLLQGEV 327

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-------------- 348
           GSGKT+VA+I++  A   G Q   MAP  ILA+QH++ + +   +               
Sbjct: 328 GSGKTIVAVISLFTAAANGLQGAFMAPTEILAEQHFKSVTRLFASIARVSTLLDGIYTFE 387

Query: 349 -----QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                 + V ++  +M  + +    E+I  G+  I IGTHAL Q  I++  L L ++DEQ
Sbjct: 388 GLLDRPLKVALLISDMKGSQKDILKEKIKKGEVDIAIGTHALIQKEIRFKSLGLAVIDEQ 447

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           HRFGV+QR  L  K   PH+L+MTATPIPRTL LT  GD+D+S I E P GR+ IKT  +
Sbjct: 448 HRFGVEQRSALRSKGLNPHILIMTATPIPRTLALTLYGDLDLSVIDELPPGRQSIKTRWL 507

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAII 521
              + +     ++  + EG++A+ ICP +EE +    ++    + +L       S +A++
Sbjct: 508 KPEQRNSAYTFIRKQIQEGRQAFIICPLVEESEVIQAKAATAEYETLSREVFPESRVALL 567

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HGRM+  +KE++M  F  G   +L++T VIEVGID+ +A+++++E+A+ FGL+QLHQ RG
Sbjct: 568 HGRMNASEKETIMRHFSEGEMDILVSTPVIEVGIDIPNAAVMLVESADRFGLSQLHQFRG 627

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           RVGRG E S C+ L   P S     RLS++++T+DGF +AEEDL+ R  GE  G +QSG+
Sbjct: 628 RVGRGTEQSYCMFLAENP-SLLGQERLSIIESTQDGFKLAEEDLRLRGPGEFFGTRQSGL 686

Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           PK  +A       LLE ARK+A  +   DP+L+      + 
Sbjct: 687 PKLRMASIS-DVGLLEQARKEATRLFELDPELSLPENAPLE 726


>gi|225630537|ref|YP_002727328.1| ATP-dependent DNA helicase RecG [Wolbachia sp. wRi]
 gi|225592518|gb|ACN95537.1| ATP-dependent DNA helicase RecG [Wolbachia sp. wRi]
          Length = 673

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 273/672 (40%), Positives = 384/672 (57%), Gaps = 19/672 (2%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ 85
                I        R +DLLFY P S++DR     + +      +T    + +H S   +
Sbjct: 16  KFHSTILPKLCGGDRVMDLLFYRPLSYVDRSK--SLPDAQVGEFITFIAKVYEHQSPTFR 73

Query: 86  KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145
            R PYKI++   +  I ++FF    + L  +F  G  + ++GK++K      + HP Y+ 
Sbjct: 74  GR-PYKIVVESESQYIFIVFFNYSVKYLYKLFPIGASVIISGKLEKFAEHWQITHPDYVS 132

Query: 146 HN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
            + +Q      IE VY L  G++      II   L  LP LPEWI+  L+++K + S  E
Sbjct: 133 LDINQFKKIACIEPVYQLCRGITNKRIGNIISSNLKELPDLPEWIDDTLIKQKKWLSWRE 192

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
           +   +H P    + E     R+RLAYDEL A Q+AL L RK   KE G    +  K  ++
Sbjct: 193 SIIKLHRPSSLAEAE---VCRKRLAYDELFAYQLALKLARKNHVKERGREFIILSKYKEQ 249

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +L  + F  T  Q  AI +I +    K RM+ +LQGDVGSGKT+VAL AM   VE   QA
Sbjct: 250 VLNELSFQLTNDQTRAIDEISERQKSKYRMISLLQGDVGSGKTVVALFAMINVVENNMQA 309

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  ILA+QHY +I++    T I V ++TG   +  R+  +  +A G  +I+IGTHA
Sbjct: 310 ALMAPTTILAEQHYNWIEEVLSCTDIKVALLTGKTSRKERKIIMNELASGVLNIVIGTHA 369

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           LFQ ++ +  L L ++DEQ RFGV QR +L  K     +L +TATPIPRTL     GD++
Sbjct: 370 LFQANVTFKNLGLAVIDEQQRFGVMQRNRLVGKGENADILFVTATPIPRTLQQAMYGDVE 429

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            S + EKP  R PIKTV + I+R+ +VIE+LK  ++ G+KAYWICP IEE +E+N  +  
Sbjct: 430 CSILKEKPKSRLPIKTVTMNISRVPDVIEKLKGAINRGEKAYWICPYIEENEETNIAAAE 489

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            RF  L + F   + IIHG+++   K+ VM SFK     LL+ATTVIEVGIDV DA+I+I
Sbjct: 490 MRFQELQKTFLDKVGIIHGKLTQEQKDQVMFSFKRNEFSLLVATTVIEVGIDVPDATIMI 549

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           IENAE FGL+QLHQLRGRVGRG + S C+LLY   LSK+S ++L ++  ++DGF IAE D
Sbjct: 550 IENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYD-NLSKSSSSKLKIMCESQDGFYIAERD 608

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           +  R  G+ILG KQSG  +F  A       LL +A  +AK  +               +L
Sbjct: 609 MMLRGSGDILGTKQSGCMEFKFADLYQDKELLNLAYNNAKGAMAD-----------FELL 657

Query: 685 LYLYQYNEAFQF 696
           L +++Y     F
Sbjct: 658 LDIFEYRSRLHF 669


>gi|261378249|ref|ZP_05982822.1| ATP-dependent DNA helicase RecG [Neisseria cinerea ATCC 14685]
 gi|269145330|gb|EEZ71748.1| ATP-dependent DNA helicase RecG [Neisseria cinerea ATCC 14685]
          Length = 680

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 242/666 (36%), Positives = 365/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLEKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK   +   M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQMAVGKRIRAVGEIKHGFHGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
               S  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAESSGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDMLPDALLDRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +      S    PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAAALGGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q +   +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G QA +MAP  ILA+QH+   K++ +   + V  ++G+  +  + +A  ++A G   I 
Sbjct: 308 SGAQAAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLAEGTVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D +++  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A  E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPMLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|229547467|ref|ZP_04436192.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1322]
 gi|256854780|ref|ZP_05560144.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T8]
 gi|229307391|gb|EEN73378.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1322]
 gi|256710340|gb|EEU25384.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T8]
 gi|315028368|gb|EFT40300.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX4000]
          Length = 678

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 227/694 (32%), Positives = 375/694 (54%), Gaps = 30/694 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            DLL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIATIEDLLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  ++          I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      ++ E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFA---PIYHVNKKVRQSTLVQLIRTAFEEYGSLIEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K    S  EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMSRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + I  +    +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAIQYDVDRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL+
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASAL 648

Query: 667 --LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             + +     + +G + R+       +EA QF  
Sbjct: 649 WQVKEWWQYPAYQGLANRVK----PQDEAAQFFD 678


>gi|73542491|ref|YP_297011.1| ATP-dependent DNA helicase RecG [Ralstonia eutropha JMP134]
 gi|72119904|gb|AAZ62167.1| ATP-dependent DNA helicase RecG [Ralstonia eutropha JMP134]
          Length = 728

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 249/685 (36%), Positives = 376/685 (54%), Gaps = 36/685 (5%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI----SEERIVTITGYISQHS 80
             L+K+         R +DL+ + P  + D      I+E        +   + G +   +
Sbjct: 46  ARLAKM------GLRRSVDLVLHLPMRYEDETTLMPIAEAIRRSGLGQPAQVEGEVIS-N 98

Query: 81  SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
               + RR   + + D +GE+TL F        K +  EG ++ V G+++       MVH
Sbjct: 99  EVTFRPRRQLVVKIADDSGELTLRFLNFYGSQTKQM-EEGVRLRVRGEVRGGFFGAEMVH 157

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ----K 196
           P        +     +  VY    G+S    +K I  AL+R P LPE +   +L+    K
Sbjct: 158 PTVRPVAPDEPLPDRLTPVYPATAGISQAYLRKAISGALARTP-LPETLPPAVLEGPVAK 216

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
                +AE+  ++H P   +      + + PA +R+ +DELLA QI+L    +  +++  
Sbjct: 217 LKLRPLAESLRLLHTPPPQESEAALADRSHPAWQRIKFDELLAQQISLRRAHEARREKNA 276

Query: 253 IPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
             +   EG +  + L  +PF  T +Q+  +++I  DM+ ++ M R+LQGDVGSGKT+VA 
Sbjct: 277 PSMPRQEGGLLTRFLAALPFRLTGAQQRVVEEIAADMTAQHPMHRLLQGDVGSGKTIVAA 336

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +A   A++AG QA IMAP  ILA+QHY  +  + +   + V  + G++    +R+A+ R+
Sbjct: 337 LAACQAIDAGYQAAIMAPTEILAEQHYRKLSAWLEPLGVPVVWLAGSLKAREKREAVARV 396

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-----------QKATA 420
             G+A + IGTHAL QD++++ +L L +VDEQHRFGV QRL L               T 
Sbjct: 397 ESGEARLAIGTHALIQDTVRFARLGLSVVDEQHRFGVAQRLALRGKAGSAEPAQTAPDTV 456

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI+R+    +
Sbjct: 457 PHQLMMSATPIPRTLAMTYYADLDVSVIDELPPGRTPIVTRLVNDERRDEVIDRIHHAAA 516

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           EG++ YW+CP IEE +    ++ VE + +L        + ++HGR+   +K SVMD F  
Sbjct: 517 EGRQVYWVCPLIEESEALQLQTAVETYETLVAALPDLRVGLVHGRLPPAEKASVMDDFSA 576

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  P
Sbjct: 577 NRLQVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCLLMYQAP 636

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           LS  +  RL+ ++ T DGF IA  DL  R  GE LG +QSG      A       L+E A
Sbjct: 637 LSPTARERLATMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLNTDAWLVEYA 696

Query: 660 RKDAKHILTQDPDLTSVRGQSIRIL 684
           R+ A+ +L Q P+  +V     R L
Sbjct: 697 REAAQVMLAQFPE--AVEAHLSRWL 719


>gi|149001989|ref|ZP_01826943.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus
           pneumoniae SP14-BS69]
 gi|147759798|gb|EDK66788.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus
           pneumoniae SP14-BS69]
          Length = 671

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 241/687 (35%), Positives = 385/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L +++ +
Sbjct: 169 ENLSQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQMLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II  A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMAADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIETWQEDPEWRMIALHLEKKEH 669


>gi|315172952|gb|EFU16969.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1346]
          Length = 678

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 226/694 (32%), Positives = 374/694 (53%), Gaps = 30/694 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            DLL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIATIEDLLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  ++          I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      ++ E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFA---PIYHVNKKVRQSTLVQLIRTAFEEYGSLIEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K       EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMPRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + I  +    +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAIQYDVDRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL+
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASAL 648

Query: 667 --LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             + +     + +G + R+       +EA QF  
Sbjct: 649 WKVKEWWQYPAYQGLANRVK----PQDEAAQFFD 678


>gi|312143899|ref|YP_003995345.1| ATP-dependent DNA helicase RecG [Halanaerobium sp. 'sapolanicus']
 gi|311904550|gb|ADQ14991.1| ATP-dependent DNA helicase RecG [Halanaerobium sp. 'sapolanicus']
          Length = 685

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 244/673 (36%), Positives = 373/673 (55%), Gaps = 23/673 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG K++  L+K+      N     DLL+Y P  + DR     I       
Sbjct: 5   LLDEVQYIKGVGPKWAKKLAKL------NIETVYDLLYYFPREYKDRSQISSIRYAQIGE 58

Query: 69  IVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            VTI   + +    +++K     K+  +D T  +  +++ +    L+++F EG+   ++G
Sbjct: 59  EVTIKAEVIKVEYKKIRKNFDLLKVTFSDDTDVLNGIWYNQG--YLRDIFEEGKFYLLSG 116

Query: 128 KIK----KLKNRIIMVHP--HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           KI     K   R  + +P    I  NS  +N   I  +YSL  GL+    ++++  AL +
Sbjct: 117 KINEKTWKKYKRKEIDNPVFEKIGDNSSVLNTGRIVPIYSLTEGLTQRRLRRVMANALKK 176

Query: 182 LPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
               L + +   LL+K + P +  +   +H P+  K  E +   R+RLA++E    Q+  
Sbjct: 177 YSSYLDDKLPDFLLKKYNLPGLKTSILGMHFPKSDKHQEVS---RKRLAFEEFFYFQLYA 233

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L  +++   E GI      +I  + L  + F  T +Q+   K+I +DM  K  M R+LQG
Sbjct: 234 LDKKQKNNIEEGIQHEAVPEIEARFLSELDFELTTAQKRVWKEISKDMESKEAMSRLLQG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT++A ++   ++    Q V MAP  ILA+QHY    +   N    + ++TG++ 
Sbjct: 294 DVGSGKTIIAALSFLESLANDYQGVFMAPTEILAEQHYLNFLELFNNFDYEITLLTGSLK 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+  E+I+ G   +IIGTHALFQ+ I+Y KL LV++DEQHRFGV+QR  L +K   
Sbjct: 354 NPERREIEEKISAGDIDLIIGTHALFQEGIEYQKLGLVVIDEQHRFGVEQRHSLKEKGDN 413

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P +L+MTATPIPR++ +   GD+D+S I E P GRK   T     NR  ++   LK  + 
Sbjct: 414 PDLLIMTATPIPRSMAMLVYGDLDLSVIDEMPPGRKRTATFWRRENRRKKIYSFLKEKIK 473

Query: 481 EGKKAYWICPQIEEKKES-NFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSF 537
           EG++AY +CP IE   E  +  S  E +  L   F +  S+A++H  + + +K+ +M  F
Sbjct: 474 EGRQAYIVCPLIEVSAEMPDLISAEELYEKLKNGFFADFSLALLHSGIKEEEKKEIMLQF 533

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + G   +LIATTVIEVG+DV +AS++IIENAE FGLAQLHQLRGRVGRG + + CIL+ +
Sbjct: 534 RAGKIDILIATTVIEVGVDVSNASLMIIENAERFGLAQLHQLRGRVGRGRDQAYCILISN 593

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PP  + +  RL ++  + DGF IAEEDLK R  GE  G +Q G+    +       +LLE
Sbjct: 594 PP-GEEAEKRLEIMTKSSDGFYIAEEDLKMRGPGEFFGTRQHGLDDLKVGSLTEDQALLE 652

Query: 658 IARKDAKHILTQD 670
            AR +A  ++  D
Sbjct: 653 KARSEAIALVEID 665


>gi|300867528|ref|ZP_07112179.1| ATP-dependent DNA helicase recG [Oscillatoria sp. PCC 6506]
 gi|300334522|emb|CBN57349.1| ATP-dependent DNA helicase recG [Oscillatoria sp. PCC 6506]
          Length = 832

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 240/696 (34%), Positives = 384/696 (55%), Gaps = 31/696 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   G+G      L K+            DLL+Y+P   ID   +  I E++   
Sbjct: 135 LDQPLNRVTGIGPNNGNRLGKL------GLLTVYDLLYYYPRDHIDYARQVSIRELAAGE 188

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVF 117
            VT+   + + + F   K     IL   L D TG+I L  F+              K  +
Sbjct: 189 TVTLVATVKRCNCFSSPKNNKLTILELILTDRTGQIKLNRFFHGNRYSNRGWQEQQKRYY 248

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFK 172
             G  +  +G +K+ K  + + +P     +S     +      +  VY L  G+   + +
Sbjct: 249 PVGAVVAASGLVKQGKYGVTLENPEIEVLDSDGGTIESATVGRLVPVYPLTDGVDAGVVR 308

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           + +  AL  +  + E + + L  + S   IA+A + IH P    D +  S +R RL +DE
Sbjct: 309 RGMAAALPAVKQVQESLPESLRDRYSLMGIADALSNIHFPL---DRDCLSASRRRLVFDE 365

Query: 233 LLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
               Q+ LL  R+   K +    +   G++       IPF  T +Q+  I +IL D++  
Sbjct: 366 FFYLQLGLLKRRQMHRKAQASAVLIPNGELLNNFYNIIPFKLTNAQQRVINEILNDLASP 425

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVG+GKT+VA++A+ AA+++G QA +MAP  +LA+QHY  +  +     + 
Sbjct: 426 EPMNRLVQGDVGAGKTVVAVVAILAAIQSGYQAALMAPTEVLAEQHYRKLVGWLNLMHLP 485

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++TG+   A RR+   ++  GQ  +++GTHAL QD++ + KL LV++DEQHRFGVQQR
Sbjct: 486 VELLTGSTKVAKRREIHSQLETGQLKVLVGTHALIQDTVNFDKLGLVVIDEQHRFGVQQR 545

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            KL QK  +PHVL MTATPIPRTL LT  GD+D+S I E P GR+ I+T I+      + 
Sbjct: 546 AKLQQKGESPHVLTMTATPIPRTLALTLHGDLDVSLIDELPPGRQAIQTTILTGKERSQA 605

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDID 529
            E ++  +  G++ Y + P +EE ++ + RS +E    L         + ++HGRM+  +
Sbjct: 606 YELIRREVGGGRQVYVVLPLVEESEKLDLRSAIEEQEKLKTTIFPEFKVGLLHGRMTSAE 665

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+  +  F++    +L++TTV+EVG+DV +A++++IEN E FGL+QLHQLRGRVGRG + 
Sbjct: 666 KDEAITKFRDRETHILVSTTVVEVGVDVPNATVMLIENCERFGLSQLHQLRGRVGRGSDR 725

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+     +  +  R+ VL+ ++DGF IAE D++ R  G++LG +Q+G+P F +A  
Sbjct: 726 SYCLLM-RGSNAGEALQRMKVLEQSQDGFFIAEMDMRLRGPGQVLGTRQAGLPDFALASL 784

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                +LE+AR+ AK ++ +D  L  +   +IR  L
Sbjct: 785 VEDQEVLELAREAAKRVIDEDERLNQMP--AIRDEL 818


>gi|282898565|ref|ZP_06306553.1| ATP-dependent DNA helicase RecG [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196433|gb|EFA71342.1| ATP-dependent DNA helicase RecG [Cylindrospermopsis raciborskii
           CS-505]
          Length = 827

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 231/681 (33%), Positives = 386/681 (56%), Gaps = 29/681 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L     +G K +  L ++            DLLFY+P  +ID   +  I E+     VTI
Sbjct: 134 LRDLPEIGIKRAENLYRL------ELLTVRDLLFYYPRDYIDYARQVNIRELKGGETVTI 187

Query: 73  TGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVFFEGR 121
            G + + + F   K +   IL   L D TG++ +  FY  +          LK  +  G 
Sbjct: 188 IGEVRRCNCFTSPKNQKLSILELMLKDQTGQVKVSRFYAGSRFSSKGWQEGLKRRYTPGT 247

Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDV----NFPLIEAVYSLPTGLSVDLFKKIIV 176
            +   G +K  +  + + +P   +  NS D         +  +YSL  G+  +  ++ ++
Sbjct: 248 LVAACGLVKPSRYGLTLDNPEIEVLANSGDAIDSFTIGRVVPIYSLTEGVVANTVRQAVM 307

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
             L     L + +   L +K +   + +A   IH P+   D +    AR RL +DE    
Sbjct: 308 AVLPSAKSLQDPLPPGLRKKYNLIELKQAIPNIHFPQ---DSDTLKMARRRLVFDEFFYL 364

Query: 237 QIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ LL  +KQ K      I    GK+  +    +PF  T +Q+  I DIL D+ +   M 
Sbjct: 365 QVGLLQRQKQAKANQTGAILAPSGKLLDQFHEILPFKFTNAQQRVINDILNDLQKPTPMN 424

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA++A+  A+++G QA +MAP  +LA+QHY  +  +     + VE++
Sbjct: 425 RLVQGDVGSGKTVVAVVAILTAIQSGYQAALMAPTEVLAEQHYRKLVTWFNLLHLPVELL 484

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG+   + RR+   ++  G+  +++GTHAL QD +++++L LV++DEQHRFGV+QR KL 
Sbjct: 485 TGSTKTSKRREIHSQLETGELPLLVGTHALIQDKVKFHRLGLVVIDEQHRFGVEQRAKLQ 544

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK   PHVL MTATPIPRTL LT  GD+D+S+I E P GR+ IKT ++  ++  +  + +
Sbjct: 545 QKGEQPHVLTMTATPIPRTLALTVHGDLDVSQIDELPPGRQQIKTSLLTSHQRPQAYDLI 604

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESV 533
           +  +++G++ Y + P +EE ++ + RS ++ +  L E       + ++HG+M+  +KE  
Sbjct: 605 RREIAQGRQVYVVLPLVEESEKLDLRSAIDEYQKLQETVFPTFQVGLLHGKMTSAEKEEA 664

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           ++ F++   ++L++TTV+EVG+DV +A++++IE+AE FGL+QLHQLRGRVGRG   S C+
Sbjct: 665 INKFRDNQTQILVSTTVVEVGVDVPNATVMLIEHAERFGLSQLHQLRGRVGRGMAQSYCL 724

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+     + ++  RL VL+ ++DGF I+E D++ R  GE++G +QSG+  F +A     +
Sbjct: 725 LM-SSSRNPDAQQRLKVLEQSQDGFFISEMDMRFRGPGEVMGTRQSGVADFTLASLVEDE 783

Query: 654 SLLEIARKDAKHILTQDPDLT 674
            +L +AR+ A+ ++  D  L 
Sbjct: 784 EVLLLARQAAEKVIDMDVSLE 804


>gi|194015058|ref|ZP_03053675.1| ATP-dependent DNA helicase RecG [Bacillus pumilus ATCC 7061]
 gi|194014084|gb|EDW23649.1| ATP-dependent DNA helicase RecG [Bacillus pumilus ATCC 7061]
          Length = 682

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 232/683 (33%), Positives = 372/683 (54%), Gaps = 23/683 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +S  +G+G++    L+++            DLL Y P  + D      + E+  + 
Sbjct: 5   LQDNVSVLKGIGEETEKTLNEL------GIHTVADLLGYFPYRYDDY-ELRNLEEVKHDE 57

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            VT+ G +          ++  ++      G   +         LK     G  ++VTGK
Sbjct: 58  RVTVEGKVHSEPVLTYYGKKRSRLTFRLLVGRFLITAICFNRPYLKRSLVLGDTVSVTGK 117

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLPE 187
             K +  I++      F          IE VYS+   ++V + ++ + +ALS  +    +
Sbjct: 118 WDKNRQSIMVQ----EFKKGTHEQDGSIEPVYSVKENVTVKMMRRFVKQALSLYVDKAED 173

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            + K L+      S  EA   IH P           AR R  Y+E L  Q+ +  +RK+ 
Sbjct: 174 PLPKQLVSTYKLMSYQEALKTIHLPETRDSL---KQARRRFVYEEFLIFQLKMQAIRKKE 230

Query: 248 KKE---IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +++   I  P + +     + + ++PF  TK+Q   + +I+ DM+   RM R+LQGDVGS
Sbjct: 231 REKTSGIQHPFSKD--AVFEFVHSLPFPLTKAQSRVLDEIMSDMASPYRMNRLLQGDVGS 288

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT VA IA+ AA  +G Q  +M P  ILA+QH + + +  +   + + ++T ++    R
Sbjct: 289 GKTAVAAIALYAAHLSGYQGALMVPTEILAEQHADSLYQLFEKWGLNIALLTSSVKGKRR 348

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R+ LER+  G+  I++GTHAL QD +++ +L LVI DEQHRFGV+QR KL  K   P VL
Sbjct: 349 RELLERLKEGEIDILVGTHALIQDEVEFQQLGLVITDEQHRFGVEQRKKLRSKGQDPDVL 408

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            MTATPIPRTL +T  G++D+S I E PAGRK I+T  +  + +D ++  +   L +G++
Sbjct: 409 FMTATPIPRTLAITVFGEMDVSVIDELPAGRKQIETYWVKHDMLDRILAFVDKELKKGRQ 468

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTC 542
           AY ICP IEE  + + ++ ++  + L E +    SI ++HG+++  +K+ VM  F     
Sbjct: 469 AYIICPLIEESDKLDVQNAIDVHSMLTEAYRGKWSIGLMHGKLASDEKDQVMRDFTANEV 528

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L++TTV+EVG++V +A+I++I +A+ FGL+QLHQLRGRVGRGE  S C+L+  P  S+
Sbjct: 529 QILVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGEHQSFCVLMADPK-SE 587

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++  T DGF ++E+DL+ R  G+  G KQSGMP+F +A        LE ARKD
Sbjct: 588 TGKERMRIMSETTDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRALETARKD 647

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
           A  ++  D   T    + +R  L
Sbjct: 648 AAELVQSDAFWTDSEYKELRQTL 670


>gi|315151044|gb|EFT95060.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0012]
          Length = 678

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 226/694 (32%), Positives = 374/694 (53%), Gaps = 30/694 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            DLL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIVTIEDLLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  ++          I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      ++ E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFA---PIYHVNKKVRQSTLVQLIRTAFEEYGSLIEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K       EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMPRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + I  +    +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAIQYDVDRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL+
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASAL 648

Query: 667 --LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             + +     + +G + R+       +EA QF  
Sbjct: 649 WKVKEWWQYPAYQGLANRVK----PQDEAAQFFD 678


>gi|57233949|ref|YP_181980.1| ATP-dependent DNA helicase RecG [Dehalococcoides ethenogenes 195]
 gi|57224397|gb|AAW39454.1| ATP-dependent DNA helicase RecG [Dehalococcoides ethenogenes 195]
          Length = 740

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 219/699 (31%), Positives = 363/699 (51%), Gaps = 37/699 (5%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L   +   +G+    +    K+            DLL+Y P+  +D     KIS++   
Sbjct: 41  ALDGDIYLVKGISAATAPKFHKM------GINTVRDLLYYFPNRHLDYSRLKKISQLEAG 94

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
              TI   + Q     +  RR  + +L D TG +  ++F      +        ++ ++G
Sbjct: 95  SEQTIIANVWQSKVNYMGGRRSTEAVLGDDTGNMRAVWFNN--PYMVRNLKPNARVVLSG 152

Query: 128 KIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPV 184
           ++     R +   P +     +   ++   +  VY L  GL     ++++   +    P 
Sbjct: 153 RVSIFNGRPVFESPEWEELPDEADLIHTGRLVPVYPLTAGLHQRSLRRLMKNFIDISTPG 212

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + +++ +D L++     +AEA    H P      E    AR RLA+DEL   Q+ +L  +
Sbjct: 213 ISDFLPEDTLKRTRLLPLAEAIRQAHFPDTE---ELKDAARNRLAFDELFILQLGVLAKK 269

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           K+++++ G  + +        +  +PF  T +Q   + DI  D+S+   M R+LQG+VGS
Sbjct: 270 KRWQEQTGRALKINLPAIDHFISQLPFKLTDAQTKCLADIKADISKSVPMSRLLQGEVGS 329

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT---------------- 348
           GKT+VA+I++  A   G Q   MAP  ILA+QH++ + +   +                 
Sbjct: 330 GKTIVAVISLFTAAANGLQGAFMAPTEILAEQHFKSVTRLFASIAKVSTLLDGVYTFEGL 389

Query: 349 ---QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
               + V ++  +M  + +    E+I  G+  I IGTHAL Q  I++  L L ++DEQHR
Sbjct: 390 LDRPLRVALMISDMKSSQKDILKEKIKKGEIDIAIGTHALIQKEIRFKSLGLAVIDEQHR 449

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+QR  L  K   PH+L+MTATPIPRTL LT  G++D+S I E P GR+ IKT  +  
Sbjct: 450 FGVEQRSALRSKGLNPHILIMTATPIPRTLALTLYGELDLSVIDELPPGRQSIKTRWLKP 509

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHG 523
            + +     ++  +  G++A+ ICP +EE +    ++    + +L       S +A++HG
Sbjct: 510 EQRNSAYNFIRKQIEAGRQAFIICPLVEESEAIQAKAATAEYETLSSEVFPESKVALLHG 569

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           RM+  +KES+M  F  G   +L++T V+EVGID+ +A+++++E+A+ FGL+QLHQ RGRV
Sbjct: 570 RMNAAEKESIMKHFNEGKMDILVSTPVVEVGIDIPNATVMLVESADRFGLSQLHQFRGRV 629

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           GRG E S C+ L   P S     RLS++++T+DGF +AEEDL+ R  GE  G +QSG+P 
Sbjct: 630 GRGTEQSYCMFLAENP-SLLGQERLSIIESTQDGFKLAEEDLRLRGPGEFFGTRQSGLPD 688

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
             +A       LLE AR++A  +   DP+L     +++ 
Sbjct: 689 LRMASIS-DVGLLEQARREATRLFESDPELNLPENKALE 726


>gi|333029286|ref|ZP_08457347.1| ATP-dependent DNA helicase RecG [Bacteroides coprosuis DSM 18011]
 gi|332739883|gb|EGJ70365.1| ATP-dependent DNA helicase RecG [Bacteroides coprosuis DSM 18011]
          Length = 698

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 229/689 (33%), Positives = 377/689 (54%), Gaps = 21/689 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            L+     +    GVG + +  L++ +     N     DL++Y P  ++DR     ISE+
Sbjct: 1   MLDLATRDIKFLSGVGPRRAEILNQEL-----NIFSLHDLIYYFPYKYVDRSRVYTISEL 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           +     + + G I   +     +++       DGTG I L++F R  + + +     +  
Sbjct: 56  TGSMPYIQLKGQILHFNVVGEGRKKRLVARFTDGTGFIDLVWF-RGVKYISSSLKLRQDY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-----VDLFKKIIVEA 178
            + GK      ++ + HP         ++   ++  Y+    +          +K++   
Sbjct: 115 LIFGKPTVFNGQVNIAHPDMENATDIQLSSLGLKPYYNTTEKMKRGSMNSQSIEKLMKSV 174

Query: 179 LSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           +  L   +PE + + ++QK     + EA  IIH P    D      A+ RL ++EL   Q
Sbjct: 175 VDLLKYPIPETLPEHIIQKYKLMPLQEALKIIHFP---GDALSLRKAQYRLKFEELFYIQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   +++  K  G      G+       +N+PF  T +Q+  +K+I QD+    +M 
Sbjct: 232 LNILSYSKERQLKYKGFTFPKIGEYFNNFFFKNLPFELTGAQKRVLKEIRQDVGTGVQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE I ++     I VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLMALDNGYQACMMAPTEILASQHYETILEFIHGLDIRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL- 414
           TG+  +  R + L  +  G+  IIIGTHAL +D++ +  L   ++DEQHRFGV QR KL 
Sbjct: 352 TGSTRKKDRERILSGLISGEVQIIIGTHALLEDTVTFKALGFAVIDEQHRFGVAQRAKLW 411

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    NR   + + 
Sbjct: 412 IKNDNPPHILVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRKKSLYKM 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +K  L+ G++ Y++ P IEE ++ + +++ + +  + + F    +  +HG+M   +K+  
Sbjct: 472 VKDQLAMGRQIYFVYPLIEESEKIDLKNLEQGYELITQEFPEYRVVKVHGKMKPAEKDEQ 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M+ F +G   +++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG + S C+
Sbjct: 532 MNLFASGQAHIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGADQSYCV 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+    LS+ +  R+ ++  + DGF IAE DLK R  G++ G +QSG+     +A     
Sbjct: 592 LVTGYKLSEITRKRIEIMVESNDGFEIAEADLKLRGPGDLEGTQQSGVAFDLKVADLAKD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+  R  A+ I+ +D + + +  + +
Sbjct: 652 GQLLQFVRTVAQDIIDKDKNRSLIENKLL 680


>gi|88802792|ref|ZP_01118319.1| putative ATP-dependent DNA helicase [Polaribacter irgensii 23-P]
 gi|88781650|gb|EAR12828.1| putative ATP-dependent DNA helicase [Polaribacter irgensii 23-P]
          Length = 698

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 239/688 (34%), Positives = 369/688 (53%), Gaps = 23/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE- 67
           L  P++   GV  + +  LS  +     N     DLL + P  +ID+     I+E+    
Sbjct: 3   LNYPITYTEGVSVQRASLLSSELGLKTCN-----DLLNFFPFRYIDKTTFHAINELQPNA 57

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V I G I++ +S   ++         D TG + L++F +  + LK+         V G
Sbjct: 58  SEVQIVGRITRLNSIAQKRGSRLVATFQDATGSMELVWF-KGQKWLKDSLKVNEPYVVYG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPT-----GLSVDLFKKIIVEALSR 181
           K+        + HP     ++        ++ VY         G+S  +    I   L +
Sbjct: 117 KLNHYNGSFSIPHPELELFSAYKKKLQTKMQPVYHTTERLVNAGISNKMMGNFIQRLLEQ 176

Query: 182 -LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
               + E + +++L+   F +  EA    H P+     E  + A  RL ++EL   Q+ L
Sbjct: 177 FYDSIQENLSQEILEDFKFMTKREALLNAHFPKSQ---EHLTKAENRLKFEELFFIQLQL 233

Query: 241 LLMRKQFKKEIG-IPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L  +   K +I  +     G I     +N +PF  T +Q+  +K++ +D++    M R+L
Sbjct: 234 LRKKLINKVKIKGVVFEKVGVIFNDFYKNKLPFDLTNAQKRVLKEVRKDVASGAHMNRLL 293

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA++AM  A++ G QA IMAP  ILA QH+  + +     ++ V I+TG+
Sbjct: 294 QGDVGSGKTIVAILAMLLAIDNGFQATIMAPTEILANQHFIAVSELVAGMELKVAILTGS 353

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    RR+    +  G  +I+IGTHAL +D +Q+  L + I+DEQHRFGV+QR KL  K 
Sbjct: 354 VRTKRRREIHAGLEDGTLNILIGTHALLEDKVQFKNLGIAIIDEQHRFGVKQRAKLWAKN 413

Query: 419 T-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH+L+MTATPIPRTL ++  GD+DIS I E P GRK +KTV    +    V + +K 
Sbjct: 414 VLPPHILVMTATPIPRTLAMSVYGDLDISVIDELPPGRKEVKTVHRFDSNRLSVFKFMKD 473

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVM 534
            + +G++ Y + P IEE    +++ +++ + S+   F      I+I+HG+M   DKE  M
Sbjct: 474 EIEKGRQVYLVYPLIEESAAMDYKDLMDGYESVSREFPLPNYQISIVHGKMKPADKEFEM 533

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G  ++++ATTVIEVG++V +AS++IIE++E FGL+QLHQLRGRVGRG + S CIL
Sbjct: 534 QRFVKGKTQIMVATTVIEVGVNVPNASVMIIESSERFGLSQLHQLRGRVGRGADQSYCIL 593

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +    LS  + TRL  +  T DGF IAE DLK R  G I+G +QSG+    IA       
Sbjct: 594 MSSFKLSPEAKTRLKTMVETTDGFKIAEVDLKLRGPGNIMGTQQSGVLDLKIADVVKDSK 653

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIR 682
           +L  AR  A  +L +D +L++     I+
Sbjct: 654 ILVAARNTAISLLQEDENLSNELNLPIK 681


>gi|58584892|ref|YP_198465.1| RecG-like helicase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58419208|gb|AAW71223.1| RecG-like helicase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 682

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 270/695 (38%), Positives = 393/695 (56%), Gaps = 24/695 (3%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P  L  L    S  +G+ K +   LSK+         + +DLLFY P S++DR     + 
Sbjct: 7   PDVLTFLN---SNLKGISKFHFGILSKLCGGN-----KVMDLLFYRPLSYVDRSK--SLL 56

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           +     + T    I +H     + R PYKI++   +  I ++FF    + L  +F  G  
Sbjct: 57  DARVGELTTFIAKIYEHQPPTFRGR-PYKIVVESKSQYIFIVFFNYSIKYLYKLFPIGAN 115

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNS-QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           + ++GK++K      + HP Y+  ++ Q      +E VY L  G++    + II   L  
Sbjct: 116 VIISGKLEKFAEHWQVTHPDYVLLDTNQFEEIARVEPVYQLCRGITNKSIRNIINSNLKE 175

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP LPEWI   L+++  + S  E+   +H P    + E     R RLAYDEL A Q+AL 
Sbjct: 176 LPDLPEWIGDTLIKQNKWLSWKESIIKLHRPNSLAEAE---ICRRRLAYDELFAYQMALK 232

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L R+   ++ G    +  K  +++L  + F  T  Q  AI +I +    K RM+ +LQGD
Sbjct: 233 LARENHVRKRGREFTISNKYKEQVLNELSFQLTNDQIRAIDEISERQKSKCRMVSLLQGD 292

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VAL AM   +E   QA +MAP  ILA+QHY +I++    T I + ++TG   +
Sbjct: 293 VGSGKTVVALFAMLNVIENNMQAALMAPTTILAEQHYNWIEEALSYTDIKIALLTGKTTR 352

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R+     +A G   IIIGTHALFQ ++ +  L L ++DEQ RFGV QR  L  K    
Sbjct: 353 KERKIITNELASGILKIIIGTHALFQANVTFKNLGLAVIDEQQRFGVIQRNCLVGKGENA 412

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L +TATPIPRTL     GD++ S + EKP  R PIKTV + I ++ EVIE+LK  ++ 
Sbjct: 413 DILFVTATPIPRTLQQAIYGDVECSILREKPKSRLPIKTVAMNIKKLVEVIEKLKSAINR 472

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           G+KAYWICP I   +  N  +   RF  L + F + + IIHG+++ + K+ VM SFK   
Sbjct: 473 GEKAYWICPCIGGNEGLNIAAAEMRFQELQKTFFNKVGIIHGKLTQVQKDQVMFSFKRNE 532

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             LL+ATTVIEVGIDV DA+I+IIENAE FGL+QLHQLRGRVGRG + S C+LLY+  +S
Sbjct: 533 FPLLVATTVIEVGIDVPDATIMIIENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYN-NIS 591

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           K+S+++L ++  ++DGF IAE+D+  R  G+ILG+KQSG  +F  A       LL +A  
Sbjct: 592 KSSFSKLKIMCESQDGFYIAEKDMMLRGSGDILGLKQSGCMEFKFADLYKDRELLNLAYN 651

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
           + K  + +         +S  +LL +++Y     F
Sbjct: 652 NTKSAIAE--------NKSFELLLDIFEYRSRLHF 678


>gi|307292130|ref|ZP_07571996.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0411]
 gi|306496783|gb|EFM66334.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0411]
          Length = 678

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 227/694 (32%), Positives = 373/694 (53%), Gaps = 30/694 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            DLL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIATIEDLLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  ++          I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      L  E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFA---PIYHVNKKVRQSTLVQLIRTAFEEYGSLVEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K       EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMPRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + I  +    +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAIQYDVDRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL+
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASAL 648

Query: 667 --LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             + +     + +G + R+       +EA QF  
Sbjct: 649 WQVKEWWQYPAYQGLANRVK----PQDEAVQFFD 678


>gi|302344911|ref|YP_003813264.1| ATP-dependent DNA helicase RecG [Prevotella melaninogenica ATCC
           25845]
 gi|302149743|gb|ADK96005.1| ATP-dependent DNA helicase RecG [Prevotella melaninogenica ATCC
           25845]
          Length = 698

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 232/689 (33%), Positives = 378/689 (54%), Gaps = 22/689 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++ L   +    GVG      L K +         + DLL Y P  ++DR     ISE+S
Sbjct: 1   MDILSQDIMYLPGVGAHRKEILGKEL-----GIHTYRDLLEYFPYKYVDRTKLYLISELS 55

Query: 66  EERI-VTITGYISQHSSFQLQKRRPYKI-LLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           ++   V I G I      ++ KR+   +    DG G   +++F   T+ +   +   ++ 
Sbjct: 56  QDMPFVQIKGRILSFEETEMGKRKKRIVAHFTDGHGICDIVWFN-GTKYIYQNYQVNKEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEA 178
            + GK      R    HP     +   +N   ++  Y         G++    +K+    
Sbjct: 115 IIFGKPTFFNGRFQFTHPDIDDASQLQLNDMGMQPFYVTTEKMKKAGITSRAVEKLTKML 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           +S+L   L E +   +       S   A   IH P+   D   T  AR RL ++EL   Q
Sbjct: 175 ISKLTEPLEETLPPFITTHLHLISRDAAMRKIHYPKSVDD---TQRARVRLKFEELFYVQ 231

Query: 238 IALLLMRK-QFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L       +K  G   N  G        + +PF  T +Q+  + +I  DM+   +M 
Sbjct: 232 LNILRYASDHRRKYRGYIFNRIGAQFNWFYSHNLPFELTGAQKRVMHEIRADMASGRQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA+QH + IK++ +   + VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLIAIDNGYQACMMAPTEILAEQHLQTIKEFLKGMNLRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG +    R++ L+ +  G  +I++GTHA+ +D +Q+  L + +VDEQHRFGV+QR KL 
Sbjct: 352 TGIVKGKKRQEVLDGLIDGSINIVVGTHAIIEDKVQFQHLGMAVVDEQHRFGVEQRAKLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    +++  +   
Sbjct: 412 SKSENPPHVLVMTATPIPRTLAMTIYGDLDVSIIDELPPGRKPIQTIHKYDDQMASLYSG 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  ++ G++ Y + P I+E +  + +++ + F ++ + F    ++ IHG+M D +KE+ 
Sbjct: 472 IRQQINLGRQVYIVYPLIKESERMDLKNLEDGFEAMQDIFPEFQLSKIHGKMKDKEKEAE 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MQKFVSGQTQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGAEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+ +  L+K +  R+ ++ +T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTNHKLTKETRKRIDIMCDTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             ++++AR++A+ I+  DP    +    +
Sbjct: 652 GQIVQMAREEAQKIIDDDPTCQKIEYNML 680


>gi|196247674|ref|ZP_03146376.1| ATP-dependent DNA helicase RecG [Geobacillus sp. G11MC16]
 gi|196212458|gb|EDY07215.1| ATP-dependent DNA helicase RecG [Geobacillus sp. G11MC16]
          Length = 682

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 235/683 (34%), Positives = 380/683 (55%), Gaps = 23/683 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +  P++  +G+G++ +  L+ +        T   +LL Y P  + D   +  ++ +  E 
Sbjct: 5   MLQPVTAVKGIGEETAAALADL------GITTVGELLNYAPYRYDDY-EQKDLAAVRHEE 57

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVT 126
            VT+ G +          ++  ++     TG   IT++ F R    LK        +TV 
Sbjct: 58  KVTVEGKVHSAPLLTYYGKKKSRLSFRLLTGRYLITVVCFNR--PYLKGKITLNETVTVI 115

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-L 185
           GK  + +  I      Y            IE VYS+ + L+V   +++I  A ++  + +
Sbjct: 116 GKWDRHRQTINA----YELRFGAAPEATGIEPVYSVRSPLTVKTMRRLIKAAFAQFGMHI 171

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           P+ +   L +        EA   +H PR  ++      AR RL Y+E L  Q+ +  +RK
Sbjct: 172 PDLLPPALRRAYRLIDKQEAVRALHFPRSREEL---HQARRRLVYEEFLLYQLKMQALRK 228

Query: 246 -QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
               +  GI  +   +     L  +PFS T +Q   I++IL DM    +M R+LQGDVGS
Sbjct: 229 VMRDERRGIIHSFPEEQLASFLSGLPFSLTNAQRRVIREILDDMRAPRQMNRLLQGDVGS 288

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA +A+ AAV +G Q  +M P  ILA+QH   + +   +T + VE++T ++    R
Sbjct: 289 GKTVVAAVALYAAVLSGFQGALMVPTEILAEQHVRSLAELFADTGVTVELLTSSVKGKRR 348

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           ++ L ++  G   I+IGTHAL Q+ +Q+ +L LVI DEQHRFGV+QR  L +K  AP VL
Sbjct: 349 KELLAKLEDGTVDIVIGTHALIQEGVQFRQLGLVITDEQHRFGVEQRRVLREKGHAPDVL 408

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL +T+ GD+D+S + E PAGRK ++T  +  N+   V++ ++  L  G +
Sbjct: 409 MMTATPIPRTLAITAFGDMDVSVLDEMPAGRKKVETYWVKHNQFARVLDFIEKELRRGHQ 468

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
           AY ICP IEE ++ + ++ ++  + L  ++     + ++HGR+S  +KE+VM +F     
Sbjct: 469 AYVICPLIEESEKLDVQNAIDVHSQLVYYYRGKYEVGLMHGRLSADEKEAVMRAFSENRI 528

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+  S CIL+  P  S+
Sbjct: 529 HVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDAQSYCILIADPK-SE 587

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++  T DGF++AE+DL+ R  G+  G KQSG+P+F    P     +LE+AR+D
Sbjct: 588 IGKERMHIMTETTDGFVLAEKDLELRGPGDFFGTKQSGLPEFQFGDPVHDYRILEVARRD 647

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
           A  +++            +R  L
Sbjct: 648 AAKLVSSAAFWRDEAYAGLRAEL 670


>gi|325859672|ref|ZP_08172802.1| ATP-dependent DNA helicase RecG [Prevotella denticola CRIS 18C-A]
 gi|327312996|ref|YP_004328433.1| ATP-dependent DNA helicase RecG [Prevotella denticola F0289]
 gi|325482598|gb|EGC85601.1| ATP-dependent DNA helicase RecG [Prevotella denticola CRIS 18C-A]
 gi|326944569|gb|AEA20454.1| ATP-dependent DNA helicase RecG [Prevotella denticola F0289]
          Length = 698

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 236/680 (34%), Positives = 375/680 (55%), Gaps = 22/680 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++ L   +   +GVG +    LS+ +         + DLL Y P  ++DR     ISE+S
Sbjct: 1   MDILSQDIMYLQGVGPRRKEILSREL-----GIRTYRDLLEYFPYKYVDRTKVYLISELS 55

Query: 66  EERI-VTITGYISQHSSFQLQKRRPYKI-LLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            +   V I G I +    +  KRR   I    DG G   L++F   T+ +   +   R+ 
Sbjct: 56  PDMPFVQIKGRIIRFEETETGKRRKRVIAHFTDGHGICDLVWFN-GTKYVYQNYQLNREY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEA 178
            V GK      R    HP         +N   ++  Y         G++    +K+    
Sbjct: 115 VVFGKPAVFNGRFQFSHPDIDDAAQLQLNDMGMQPFYITTEKMKKAGITSRAMEKLTKTL 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + +L   L E +   +       S   A   IH PR   D   T  AR RL ++EL   Q
Sbjct: 175 IGKLSEPLEETLPPFITSHLHLISRDAALRKIHYPRSVDD---TQRARVRLKFEELFYVQ 231

Query: 238 IALLLMRK-QFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L       +K  G   N  G         N+PF  T +Q+  + +I  DM+   +M 
Sbjct: 232 LNILRYASDHRRKYRGYIFNRIGAQFNWFYTHNLPFELTGAQKRVMHEIRADMAGGRQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA+QH + ++ + +   + +E++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLIAIDNGYQACMMAPTEILAEQHLQTLRDFLKGMNLRIELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG +    RR+ L+ +  G  HI++GTHAL +D +Q+++L + +VDEQHRFGV QR +L 
Sbjct: 352 TGIVKGKRRREVLDGLMDGSIHIVVGTHALLEDKVQFHRLGMAVVDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    +++  +   
Sbjct: 412 SKSENPPHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTLHKYDDQMPSLYNG 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  +  G++ Y + P I+E +  + +++ + F++L + F    ++ +HG+M D +KE+ 
Sbjct: 472 IRQQIRLGRQVYIVYPLIKESERMDLKNLEDGFSALCDIFPEFRLSKVHGKMKDKEKEAE 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CI
Sbjct: 532 MQKFVSGQTQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+    L+K +  R+ ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTSHRLTKETSRRIDIMCETNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQDPD 672
             ++++AR++A+ I+  DPD
Sbjct: 652 GQIVQMAREEAQKIIDADPD 671


>gi|253575788|ref|ZP_04853123.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844831|gb|EES72844.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 683

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 234/683 (34%), Positives = 377/683 (55%), Gaps = 21/683 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+    GV       L +             DL+ Y+P  + D   R  ++E+ +   VT
Sbjct: 9   PVKQVSGV-----SALKQE-ELHAFGIFTVNDLIEYYPFRYEDYRLR-SLTEVKDGDKVT 61

Query: 72  ITGYISQHSSFQLQKRR-PYKI-LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           +   I      Q   R+      ++ D     T  +F R    LK+    GR+I +TGK 
Sbjct: 62  VQAQIMGLPVLQRYGRKSRLTCKMIADDW-MFTATWFNR--HFLKDQLTTGREIILTGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
              ++++ +    +   +   +    ++ VYS+   ++    +K I +AL +   ++PE 
Sbjct: 119 DMRRSQLTVSESEF--PDRGTLRSGSLQPVYSVGGKITQQWMRKTIGQALQQYGEMIPEI 176

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           +  +LL+K        A   +H P+   D E    AR R+ Y+EL   Q+ L   R    
Sbjct: 177 LPPELLRKYGLMPRKTAILRLHQPQ---DSEEGQQARRRMVYEELFLFQLKLQAYRAMNH 233

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++  G+   V+    ++ +R++PF  T +Q+    +IL+DM     M R+LQGDVGSGKT
Sbjct: 234 ERMDGVAHVVDNATIREFVRSLPFELTDAQKKVELEILKDMRSPYCMNRLLQGDVGSGKT 293

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           ++A IA+ AAV++G Q   M P  ILA+QH   + +  +   I V ++TG++    R+  
Sbjct: 294 VIAAIALYAAVKSGHQGTFMVPTEILAEQHMRSLSRLFEPFGITVGLLTGSVTGRKRKDL 353

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  +  G   I++GTHAL Q+ + +  L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 354 LGSLQMGLTDIVVGTHALIQEDVFFRSLSLVITDEQHRFGVNQRSILRRKGFNPDVLTMT 413

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ GD+D+S ++E+P GRKPI T  +  + +D V+  ++  +S+G++AY 
Sbjct: 414 ATPIPRTLAITAFGDMDVSTLSERPKGRKPITTYWVKHSMMDRVLGFIEREVSQGRQAYV 473

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           ICP IEE  + + ++ ++ + S+ + F +  + ++HGRM+  +K+ VM +F     +LL+
Sbjct: 474 ICPLIEESDKLDVQNAIDLYVSMQQAFPNMKVGLLHGRMTAAEKDEVMRAFYENEVQLLV 533

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG+DV +A+++I+ +A+ FGL+QLHQLRGRVGRGE  S C+L+  P  S+    
Sbjct: 534 STTVVEVGVDVPNATLMIVMDADRFGLSQLHQLRGRVGRGEHASYCVLIADPK-SEVGQE 592

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ V+ +T+DGF +A  DL+ R  G+  G KQSG+P F +A      ++LE AR DA  +
Sbjct: 593 RMKVMTDTDDGFEVARRDLELRGPGDFFGTKQSGVPDFRVADMVSDYAVLEAARDDAARL 652

Query: 667 LTQDPDLTSVRGQSIRILLYLYQ 689
           +  +   TS     +R  L   Q
Sbjct: 653 VAGEAFWTSPEYGPLREYLRREQ 675


>gi|217969253|ref|YP_002354487.1| ATP-dependent DNA helicase RecG [Thauera sp. MZ1T]
 gi|217506580|gb|ACK53591.1| ATP-dependent DNA helicase RecG [Thauera sp. MZ1T]
          Length = 684

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 238/663 (35%), Positives = 363/663 (54%), Gaps = 17/663 (2%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
            GVG + +  L+++   G        D+L + P  + D      I+ +       + G +
Sbjct: 11  PGVGAQLAGRLARLDLRGP------RDVLLHLPLRYEDETRLTPIARLRPGFPAQVEGEV 64

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
                  L+ RR     + D +G +   +        K +   G ++ + G+ +     +
Sbjct: 65  LGSEVV-LRPRRQLVARIADDSGTLVARWLNFYPSQQK-LLAPGGRVRLFGEARGGFFGL 122

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK 196
            MVHP        +     +  VY    G+     +K++ +AL   P L E +    L +
Sbjct: 123 EMVHPRLRAVAPGEALPDALTPVYPTTAGVGQITLRKLVAQALQSEP-LDELLPAAWLHR 181

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P  AEA + +H+P    D     +   PA +R+ ++ELL  Q++L       + +  
Sbjct: 182 LGLPGFAEALHALHHPAPDADPFALEQREHPAWQRMKFEELLVQQLSLRRAWLARRAQAA 241

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           + +     +   +L ++PF PT +Q     +I  D++  + M R+LQGDVGSGKTLVA +
Sbjct: 242 VALPARALLTAALLESLPFRPTGAQARVGAEIAADLAAPHPMQRLLQGDVGSGKTLVAAL 301

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           AM  A E G QA +MAP  ILA+QH++ +  + +   I V  ++G+  +  R   L R+A
Sbjct: 302 AMLQAAENGWQAAMMAPTEILAEQHWKKLSAWLEPLGIGVAWLSGSRRKRAREAELARLA 361

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTAT 429
            G+  + +GTHAL +D +   +L LV+VDEQHRFGV+QRL L +K      PH+L+M+AT
Sbjct: 362 SGEVLLAVGTHALIEDPVTLPRLALVVVDEQHRFGVRQRLALREKGEGGRRPHMLMMSAT 421

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL +T   D+D+S + E P GR PI+T ++   R DEV+ R++    EG++AYW+C
Sbjct: 422 PIPRTLAMTHYADLDVSVLDELPPGRTPIRTRLVSDVRRDEVVARVRAACLEGRQAYWVC 481

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P IEE +    ++  + F +L E      + ++HGR+ + +K + M +F  G   LL+AT
Sbjct: 482 PLIEESEALQLQTAQDTFATLVEALPELRVGLVHGRLRNEEKSATMAAFSAGALDLLVAT 541

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S CIL+Y  PLS+    RL
Sbjct: 542 TVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILIYAQPLSQTGRERL 601

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            V+    DGF IA EDL+ R  GE +G +QSG+P    A  EL   L E AR+ A+H+L 
Sbjct: 602 KVIYENIDGFAIAREDLRIRGPGEFVGARQSGVPLLRYADLELDAGLAEPARELAEHLLA 661

Query: 669 QDP 671
            DP
Sbjct: 662 HDP 664


>gi|78049064|ref|YP_365239.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037494|emb|CAJ25239.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 717

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 245/700 (35%), Positives = 377/700 (53%), Gaps = 36/700 (5%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           PS      A LS+  GVG K +   +              DL  + P  + DR     I+
Sbjct: 9   PSLAVAGQARLSSLPGVGPKVADKFA------ARGILSVQDLWLHLPLRYEDRTRLTTIA 62

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGR 121
           ++       + G +        + R   ++ ++D + G + L FF+ +   +   F  G 
Sbjct: 63  QLQGGVPAQVEGRVEAVER-GFRFRPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FAVGT 120

Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEAL 179
           ++ V G  K  ++   +VHP Y +    +D      ++ VY +  G+     +K+I +AL
Sbjct: 121 RLRVFGTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIGQAL 180

Query: 180 SRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDEL 233
            RLP     E +    LQ +  PS+  A   +H P    D         PA++RLA +EL
Sbjct: 181 ERLPPESALELLPPHWLQDERLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQQRLAIEEL 240

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA Q++L   R   ++     +   G + Q++ + +PF  T +Q+   + I  D++  + 
Sbjct: 241 LAHQLSLRRQRIALQRLHAPSLPGNGTLVQQLCKALPFQLTGAQQRVFEQIAHDLAHPSP 300

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + +   I + 
Sbjct: 301 MLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLTNLRGWLEPLGIRIV 360

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    R   +  +A GQA +++GTHAL Q+++ ++ L L I+DEQHRFGV QRL 
Sbjct: 361 WLAGKVTGKARAAVMAEVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHRFGVHQRLA 420

Query: 414 LTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L  K       PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+++   R  
Sbjct: 421 LRDKGAAAGSVPHQLVMTATPIPRTLAMSAYADLDVSAIDELPPGRTPVQTIVLSAERRP 480

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE--------------RFNSLHEHFT 515
           E++ER++   +EG++AYW+C  IEE +E    +  +               F +L     
Sbjct: 481 ELVERIRAACAEGRQAYWVCTLIEESEEPEKGAQGQQGGPPRIEAQAAEVTFEALSAQLP 540

Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIENAE  GLA
Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGLA 600

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+ R  GE+L
Sbjct: 601 QLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLELRGPGELL 660

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           G +Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 661 GTRQTGLASFRIADLARDAGLLPRVQVLAERLLDEAPEIA 700


>gi|256960459|ref|ZP_05564630.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis Merz96]
 gi|293385117|ref|ZP_06630943.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis R712]
 gi|312906699|ref|ZP_07765699.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DAPTO 512]
 gi|312910839|ref|ZP_07769675.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DAPTO 516]
 gi|256950955|gb|EEU67587.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis Merz96]
 gi|291077594|gb|EFE14958.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis R712]
 gi|310627347|gb|EFQ10630.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DAPTO 512]
 gi|311288862|gb|EFQ67418.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DAPTO 516]
          Length = 678

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 227/694 (32%), Positives = 374/694 (53%), Gaps = 30/694 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            DLL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIATIEDLLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  ++          I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      L  E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFA---PIYHVNKKVRQSTLVQLIRTAFEEYGSLVEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K       EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMPRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + I  + +  +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAIQYDVERLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL+
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASAL 648

Query: 667 --LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             + +     + +G + R+       +EA QF  
Sbjct: 649 WKVKEWWQYPAYQGLANRVK----PQDEAAQFFD 678


>gi|222099455|ref|YP_002534023.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359]
 gi|221571845|gb|ACM22657.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359]
          Length = 750

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 234/661 (35%), Positives = 362/661 (54%), Gaps = 13/661 (1%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   RGVG        +             DLL + P  + DR    K++E+   R
Sbjct: 83  LSTDVQYARGVGP------GRKKKLKKLGIETLKDLLEFFPRDYEDRRKVLKLNELIPGR 136

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            VT  G IS     + Q       +L+DG   + L +F +   + +     G+++ VTG 
Sbjct: 137 KVTTQGKISSVEKKKFQNMNILVAVLSDGLMHVLLKWFNQDFLLTQLKQLVGKEVFVTGT 196

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPE 187
           +K           +      +      I  +Y L +G+S    ++I  E +  L   L E
Sbjct: 197 VKLNPYTGQYEIHNAEVLPKEREIIRRIFPIYRLTSGISQKQMRRIFEENIPSLCCSLEE 256

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            + + +++K++  SI +A+  +H P+     E    ARERLAY+EL   Q+A   +R++ 
Sbjct: 257 TLPERIIKKRNLLSIKDAYYGMHFPKTLHHLE---KARERLAYEELFTLQLAFQKVRRER 313

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GIP  +EG++A++ ++++PF  T +Q+ A ++I +DM  +  M R+LQGDVGSGKT
Sbjct: 314 EKHGGIPKKIEGRLAEEFIKSLPFQLTGAQKRAHEEIRKDMISEKPMNRLLQGDVGSGKT 373

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A+    EAG QA  M P  ILA QHY    +      I V ++ G    + + K 
Sbjct: 374 VVAQLAILDNYEAGFQAAFMVPTSILAIQHYRRTMESFSRFDIRVALLIGATSPSEKEKI 433

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
              + +GQ  ++IGTHAL Q+ + +  L LVI+DEQHRFGV+QR  L  K      L+M+
Sbjct: 434 KSGLKNGQIDLVIGTHALIQEDVHFKNLGLVIIDEQHRFGVRQREALMNKGRMVDTLVMS 493

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPR++ L   GD+D++ I E P GRK ++T+++ ++R++EV E ++  + +G +A+ 
Sbjct: 494 ATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTILVSMDRVNEVYEFVRQEVMKGGQAFI 553

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           + P IEE  + + +S VE +  L         + ++HG++S  +K+ VM  F  G   +L
Sbjct: 554 VYPLIEESDKLSAKSAVEMYEYLSREVFPEFRVGLMHGKLSQEEKDRVMMEFAEGRYDIL 613

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVGIDV  A++++IEN E FGLAQLHQLRGRVGRG + + C L+    + + + 
Sbjct: 614 VSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVG-DVGEEAM 672

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL       DGF IAE DLK R  GE  G+KQ GM  F +A       LLE AR+D + 
Sbjct: 673 ERLRFFTLNTDGFKIAEYDLKTRGPGEFFGLKQHGMSGFKVANLYKDLKLLEWAREDVRE 732

Query: 666 I 666
           I
Sbjct: 733 I 733


>gi|295109962|emb|CBL23915.1| ATP-dependent DNA helicase RecG [Ruminococcus obeum A2-162]
          Length = 681

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 229/682 (33%), Positives = 381/682 (55%), Gaps = 17/682 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             L T +GVG+K      ++            DLL Y+P ++        I+++ E  + 
Sbjct: 3   QSLQTLKGVGEKTEKLFFRL------GIYDTEDLLHYYPRNYDAFEAPVDIADLEEGTVK 56

Query: 71  TITGYISQHSSFQL-QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            ++  +      +    ++     + D +G++++++F      L+ +  +G    + G++
Sbjct: 57  AVSAAVCSGVYVRSAGGKQIITATVADQSGKLSVIWFN--MPYLRTILKKGSTFVLRGRV 114

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            K +NRI M HP      + +     ++ +Y L +GLS     K I + L  LP+  E++
Sbjct: 115 IKKQNRIQMEHPEVFTPAAYEEILHSLQPIYGLTSGLSNKTITKTIRQLLENLPMYSEFL 174

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            +D+ Q+     I  A   IH P   ++   +   R+RL +DE L   +++ +M+++ ++
Sbjct: 175 SEDIRQRYQLADINYALRTIHFPLSMEELLVS---RKRLVFDEFLLFILSIQMMKEKNEE 231

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   +  + ++I+ N+P+S T +Q +   +I +DMS +  M R++QGDVGSGKT++
Sbjct: 232 TPNYFPIQKTWVTEQIIENLPYSLTNAQLNTWHEIERDMSGQALMSRLVQGDVGSGKTII 291

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRKA 367
           A +AM  + E G Q+ +M P  +LA+QHY+   +      +     ++TG+     +R+ 
Sbjct: 292 AFLAMILSCENGYQSALMVPTEVLAKQHYKSFMELLAQQGLDFCTVLLTGSNTAKEKREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             +IA G+A IIIGTHAL Q+ + Y  L LVI DEQHRFGV+QR  L ++   P+VL+M+
Sbjct: 352 YAKIASGEAQIIIGTHALIQEKVVYKNLSLVITDEQHRFGVKQRESLAERGNPPNVLVMS 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +   GD+DIS I E PA R PIK  ++  +   +    ++  + EG++ Y 
Sbjct: 412 ATPIPRTLAIILYGDLDISVIDELPARRLPIKNCVVDTSYRPKAYSFIQRQVREGRQIYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP +EE +  +  +V++  + +   F S I I  +HG+M   +K  +M+ F     ++L
Sbjct: 472 ICPMVEESEGLDAENVLDYTSKIKSIFPSDIQIEYLHGKMKASEKNKIMERFAANEIQIL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE  S CI +        S 
Sbjct: 532 VSTTVVEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEHQSYCIFVQGNKEDTTS- 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL +L  + DGF IA EDLK R  G++ GI+QSG+ +F I       S+L+ A + A  
Sbjct: 591 KRLEILNKSNDGFYIAGEDLKLRGPGDLFGIRQSGVMEFRIGDIYNDSSILKSASEAASE 650

Query: 666 ILTQDPDLTSVRGQSIRILLYL 687
           IL+ DPDLT  + Q ++  L +
Sbjct: 651 ILSLDPDLTLPQNQLLKEQLQI 672


>gi|227517284|ref|ZP_03947333.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0104]
 gi|257417234|ref|ZP_05594228.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis AR01/DG]
 gi|227075291|gb|EEI13254.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0104]
 gi|257159062|gb|EEU89022.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ARO1/DG]
          Length = 678

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 226/692 (32%), Positives = 369/692 (53%), Gaps = 26/692 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            DLL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIATIEDLLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  ++          I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      L  E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFS---PIYHVNKKVRQSTLVQLIRTAFEEYGSLVEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K       EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMPRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + I  +    +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAIQYDVDRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL+
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASAL 648

Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
                       Q++     +   +EA QF  
Sbjct: 649 WQVKEWWQYPAYQALANR--VKPQDEAAQFFD 678


>gi|229548042|ref|ZP_04436767.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ATCC 29200]
 gi|257080492|ref|ZP_05574853.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis E1Sol]
 gi|257091345|ref|ZP_05585706.1| ATP-dependent DNA helicase recG [Enterococcus faecalis CH188]
 gi|312905408|ref|ZP_07764522.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0635]
 gi|229306831|gb|EEN72827.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ATCC 29200]
 gi|256988522|gb|EEU75824.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis E1Sol]
 gi|257000157|gb|EEU86677.1| ATP-dependent DNA helicase recG [Enterococcus faecalis CH188]
 gi|310631137|gb|EFQ14420.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0635]
 gi|315161222|gb|EFU05239.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0645]
 gi|315577138|gb|EFU89329.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0630]
          Length = 678

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 226/694 (32%), Positives = 374/694 (53%), Gaps = 30/694 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            DLL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIATIEDLLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  ++          I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      ++ E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFA---PIYHVNKKVRQSTLVQLIRTAFEEYGSLIEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K       EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMPRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + I  +    +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAIQYDVDRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL+
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASAL 648

Query: 667 --LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             + +     + +G + R+       +EA QF  
Sbjct: 649 WQVKEWWQYPAYQGLANRVK----PQDEAAQFFD 678


>gi|138894706|ref|YP_001125159.1| ATP-dependent DNA helicase RecG [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266219|gb|ABO66414.1| ATP-dependent DNA helicase RecG [Geobacillus thermodenitrificans
           NG80-2]
          Length = 678

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 235/683 (34%), Positives = 380/683 (55%), Gaps = 23/683 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +  P++  +G+G++ +  L+ +        T   +LL Y P  + D   +  ++ +  E 
Sbjct: 1   MLQPVTAVKGIGEETAAALADL------GITTVGELLNYAPYRYDDY-EQKDLAAVRHEE 53

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVT 126
            VT+ G +          ++  ++     TG   IT++ F R    LK        +TV 
Sbjct: 54  KVTVEGKVHSAPLLTYYGKKKSRLSFRLLTGRYLITVVCFNR--PYLKGKITLNETVTVI 111

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-L 185
           GK  + +  I      Y            IE VYS+ + L+V   +++I  A ++  + +
Sbjct: 112 GKWDRHRQTINA----YELRFGAAPEATGIEPVYSVRSPLTVKTMRRLIKAAFAQFGMHI 167

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           P+ +   L +        EA   +H PR  ++      AR RL Y+E L  Q+ +  +RK
Sbjct: 168 PDLLPPALRRAYRLIDKQEAVRALHFPRSREEL---HQARRRLVYEEFLLYQLKMQALRK 224

Query: 246 -QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
               +  GI  +   +     L  +PFS T +Q   I++IL DM    +M R+LQGDVGS
Sbjct: 225 VMRDERRGIIHSFPEEQLASFLSGLPFSLTNAQRRVIREILDDMRAPRQMNRLLQGDVGS 284

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA +A+ AAV +G Q  +M P  ILA+QH   + +   +T + VE++T ++    R
Sbjct: 285 GKTVVAAVALYAAVLSGFQGALMVPTEILAEQHVRSLAELFADTGVTVELLTSSVKGKRR 344

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           ++ L ++  G   I+IGTHAL Q+ +Q+ +L LVI DEQHRFGV+QR  L +K  AP VL
Sbjct: 345 KELLAKLEDGTVDIVIGTHALIQEGVQFRQLGLVITDEQHRFGVEQRRVLREKGHAPDVL 404

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL +T+ GD+D+S + E PAGRK ++T  +  N+   V++ ++  L  G +
Sbjct: 405 MMTATPIPRTLAITAFGDMDVSVLDEMPAGRKKVETYWVKHNQFARVLDFIEKELRRGHQ 464

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
           AY ICP IEE ++ + ++ ++  + L  ++     + ++HGR+S  +KE+VM +F     
Sbjct: 465 AYVICPLIEESEKLDVQNAIDVHSQLVYYYRGKYEVGLMHGRLSADEKEAVMRAFSENRI 524

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+  S CIL+  P  S+
Sbjct: 525 HVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDAQSYCILIADPK-SE 583

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++  T DGF++AE+DL+ R  G+  G KQSG+P+F    P     +LE+AR+D
Sbjct: 584 IGKERMHIMTETTDGFVLAEKDLELRGPGDFFGTKQSGLPEFQFGDPVHDYRILEVARRD 643

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
           A  +++            +R  L
Sbjct: 644 AAKLVSSAAFWRDEAYAGLRAEL 666


>gi|29377569|ref|NP_816723.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis V583]
 gi|227554533|ref|ZP_03984580.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis HH22]
 gi|256962943|ref|ZP_05567114.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis HIP11704]
 gi|257083222|ref|ZP_05577583.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis Fly1]
 gi|257088220|ref|ZP_05582581.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis D6]
 gi|257417957|ref|ZP_05594951.1| ATP-dependent DNA helicase recG [Enterococcus faecalis T11]
 gi|307273601|ref|ZP_07554829.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0855]
 gi|29345036|gb|AAO82793.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis V583]
 gi|227176331|gb|EEI57303.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis HH22]
 gi|256953439|gb|EEU70071.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis HIP11704]
 gi|256991252|gb|EEU78554.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis Fly1]
 gi|256996250|gb|EEU83552.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis D6]
 gi|257159785|gb|EEU89745.1| ATP-dependent DNA helicase recG [Enterococcus faecalis T11]
 gi|306509614|gb|EFM78656.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0855]
 gi|315026444|gb|EFT38376.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX2137]
 gi|315171209|gb|EFU15226.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1342]
 gi|315573261|gb|EFU85452.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0309B]
 gi|315581165|gb|EFU93356.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0309A]
          Length = 678

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 227/694 (32%), Positives = 373/694 (53%), Gaps = 30/694 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            DLL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIATIEDLLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  ++          I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      L  E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFA---PIYHVNKKVRQSTLVQLIRTAFEEYGSLVEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K       EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMPRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + I  +    +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAIQYDVDRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL+
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASAL 648

Query: 667 --LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             + +     + +G + R+       +EA QF  
Sbjct: 649 WKVKEWWQYPAYQGLANRVK----PQDEAAQFFD 678


>gi|255970699|ref|ZP_05421285.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T1]
 gi|312953204|ref|ZP_07772050.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0102]
 gi|255961717|gb|EET94193.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T1]
 gi|310628821|gb|EFQ12104.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0102]
 gi|315152773|gb|EFT96789.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0031]
 gi|315159392|gb|EFU03409.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0312]
 gi|323479037|gb|ADX78476.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis 62]
          Length = 678

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 227/694 (32%), Positives = 373/694 (53%), Gaps = 30/694 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            DLL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIATIEDLLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  ++          I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      L  E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFA---PIYHVNKKVRQSTLVQLIRTAFEEYGSLVEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K       EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMPRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + I  +    +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAIQYDVDRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL+
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASSL 648

Query: 667 --LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             + +     + +G + R+       +EA QF  
Sbjct: 649 WQVKEWWQYPAYQGLANRVK----PQDEAAQFFD 678


>gi|255066129|ref|ZP_05317984.1| ATP-dependent DNA helicase RecG [Neisseria sicca ATCC 29256]
 gi|255049674|gb|EET45138.1| ATP-dependent DNA helicase RecG [Neisseria sicca ATCC 29256]
          Length = 704

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 242/666 (36%), Positives = 362/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 41  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 93

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 94  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQMAAGKRIRAVGEIKHGFYGDEMIHPKI 153

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                       +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 154 R-DAEGSGLAESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLKLPHLA 211

Query: 204 EAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +      S    PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 212 ESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAAALGGDG 271

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q +   +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 272 TLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIE 331

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G QA +MAP  ILA+QH+   K++ +   + V  ++G+  +  + +A  ++A G   I 
Sbjct: 332 SGAQAAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGTVKIA 391

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D +++  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 392 VGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRTLAMSF 451

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE +   
Sbjct: 452 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEESETLQ 511

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+DV 
Sbjct: 512 LQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVP 571

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S CILL+  PLS+ +  RL V+    DGF
Sbjct: 572 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCILLFAEPLSELAKARLKVIYEHTDGF 631

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A  E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 632 EIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPMLIEQNPEI--VEA 689

Query: 679 QSIRIL 684
              R L
Sbjct: 690 HLARWL 695


>gi|288929111|ref|ZP_06422956.1| ATP-dependent DNA helicase RecG [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329213|gb|EFC67799.1| ATP-dependent DNA helicase RecG [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 699

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 233/686 (33%), Positives = 374/686 (54%), Gaps = 22/686 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +    GVG +    LSK +     N   F DLL Y+P  ++DR    +I+++  + 
Sbjct: 5   LDQDIMYLAGVGPRKKEILSKEL-----NINTFGDLLEYYPYKYVDRTQIYRIAQLQGDM 59

Query: 69  -IVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             V + G+I     F +  +++       DG     L++F +  + + + +  G +  V 
Sbjct: 60  PYVQVKGHILSFEEFDMGPRKKRIVAHFTDGWNVADLVWF-QGAKYVLSTYKVGVEYIVF 118

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALSR 181
           GK      R    HP         +    ++  Y         G++    +++    L +
Sbjct: 119 GKPSVYGGRYQFAHPDIDEATELKLAEMGMQPHYGTTERMKKAGITSRAMERLTKGLLEQ 178

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           +   L E +   +       S  +A   +H P    + +     + RL ++EL   Q+ +
Sbjct: 179 MQAPLTETLPPFITNALHLVSRDQAMRGVHYPHNTDELQRA---QMRLKFEELFYVQLNI 235

Query: 241 L-LMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L       +K  G   +  G+       N +PF  T +Q+  + +I +DM    +M R+L
Sbjct: 236 LRYANFHRRKYRGYNFSKIGQFFNSFYHNNLPFELTGAQKRVMHEIRKDMDSGRQMNRLL 295

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVAL++M  AV+ G QA IMAP  ILA+QH   +++  Q T +  E++TG 
Sbjct: 296 QGDVGSGKTLVALMSMLIAVDNGFQACIMAPTEILAEQHLATVQQMLQGTGVTAELLTGI 355

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QK 417
           +    R   L+R+A GQ HI++GTHAL +D++Q+  L L +VDEQHRFGV+QR KL  + 
Sbjct: 356 VKGKRRADVLQRLASGQLHILVGTHALLEDTVQFAHLGLAVVDEQHRFGVKQRAKLWGKS 415

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N+   +   ++ 
Sbjct: 416 DNPPHVLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTLHKYDNQTTSLYAGIRQ 475

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            +  G++ Y + P I+E ++++ +++ E + +L + F    ++ IHG+M   +KE+ M  
Sbjct: 476 QVGLGRQVYIVYPLIKESEKTDLKNLEEGYEALTDIFPEYKMSKIHGKMKSKEKEAEMAR 535

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CIL+ 
Sbjct: 536 FASGETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVT 595

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSL 655
           +  LS  +  R+ ++  T DGF IAE DLK R  G++ G +QSGM     IA      +L
Sbjct: 596 NRALSAETRKRIDIMCETNDGFRIAEADLKLRGPGDLEGTQQSGMAFDLKIANIARDGAL 655

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSI 681
           +++AR +A+ I+ +DPD        +
Sbjct: 656 VQLARDEAQKIVERDPDCNLPEHAML 681


>gi|88808500|ref|ZP_01124010.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 7805]
 gi|88787488|gb|EAR18645.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 7805]
          Length = 831

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 243/705 (34%), Positives = 377/705 (53%), Gaps = 33/705 (4%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL APLS  RG+G K +  L+ +            DLL ++P  ++D     +I  +   
Sbjct: 131 PLDAPLSRVRGIGPKQAERLASL------GLLVVRDLLLHYPRDYVDYSALRRIEALVPG 184

Query: 68  RIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFF-----YRKTEMLK---NV 116
              TI   + +   F   +     IL   L D TG I +  F     +     L     +
Sbjct: 185 ETATIVATVRRCHGFTSPRNPNLSILELQLQDPTGRIKVSRFLAGRRFSNPSYLHGQTRL 244

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-----NFPLIEAVYSLPTGLSVDLF 171
           +  G  + V+G +K     +    P      S            +  VYSL  GL+ D F
Sbjct: 245 YPNGATVAVSGLVKDGPYGLSFQDPLIEVMESAQAPLQSKRIGRLLPVYSLTEGLTADRF 304

Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
           + ++  AL  + + PE +     Q +      +A   IH P  +   E    AR RL +D
Sbjct: 305 RTLVEAALPSVRLWPEPLPPQRRQARQLLDRHQALTAIHRPETS---EQLQQARHRLVFD 361

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKI---AQKILRNIPFSPTKSQESAIKDILQDM 288
           E L  Q+ L+  R   ++     + +         + L N+PF  T +Q   + +I +D+
Sbjct: 362 EFLLLQLGLMQRRAALRQRAAPSLRIASDRDGLLARFLDNLPFQFTGAQTRVLAEIDEDL 421

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
            +   M R++QGDVGSGKT+VA+ A+  A++AG Q  +MAP  +LA+QHY  + ++    
Sbjct: 422 ERSEPMARLVQGDVGSGKTVVAVAALLKAIQAGWQGAMMAPTEVLAEQHYRSLCQWLPPL 481

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            + VE++TG+ P   RR+ L  +A G   +++GTHAL +D + + +L LV+VDEQHRFGV
Sbjct: 482 HVTVELLTGSTPLKKRRQLLADVASGGCKVLVGTHALLEDPVAFERLGLVVVDEQHRFGV 541

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           +QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI T ++  +  
Sbjct: 542 RQRNRLLGKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPILTTMLAGSER 601

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMS 526
           D+    ++  + +G++AY + P +EE ++ + RS V+    L E       + ++HGR+ 
Sbjct: 602 DQAYSVIREEVEKGQRAYVVLPLVEESEKMDLRSAVDVHRQLEEEEFPDLKVGLLHGRLP 661

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++V+ +F  G  ++L++TTV+EVG+DV +AS+++I++A+ FGLAQLHQLRGRVGRG
Sbjct: 662 SAEKQAVIQAFARGETQVLVSTTVVEVGVDVPEASVMMIDHADRFGLAQLHQLRGRVGRG 721

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C LL +   +  +  RL VL  + DGF IAE DL+ R  G++LG +QSG+P   +
Sbjct: 722 AAASRC-LLINDSRNPLARQRLEVLVRSTDGFEIAEMDLRLRGPGQVLGTRQSGLPDLAL 780

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           A      S+LE AR +A  IL  DPDL +     +R LL   +  
Sbjct: 781 ASLADDGSVLEEARDEAADILRNDPDLNN--HPVLRCLLDDQRNR 823


>gi|255974275|ref|ZP_05424861.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T2]
 gi|256618137|ref|ZP_05474983.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ATCC 4200]
 gi|300861637|ref|ZP_07107721.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TUSoD Ef11]
 gi|307284862|ref|ZP_07565018.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0860]
 gi|255967147|gb|EET97769.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T2]
 gi|256597664|gb|EEU16840.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ATCC 4200]
 gi|295114424|emb|CBL33061.1| ATP-dependent DNA helicase RecG [Enterococcus sp. 7L76]
 gi|300849098|gb|EFK76851.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TUSoD Ef11]
 gi|306503121|gb|EFM72378.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0860]
 gi|315031793|gb|EFT43725.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0017]
 gi|315145460|gb|EFT89476.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX2141]
          Length = 678

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 227/694 (32%), Positives = 373/694 (53%), Gaps = 30/694 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            DLL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIATIEDLLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  ++          I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      L  E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFA---PIYHVNKKVRQSTLVQLIRTAFEEYGSLVEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K       EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMPRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + I  +    +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAIQYDVDRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL+
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASAL 648

Query: 667 --LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             + +     + +G + R+       +EA QF  
Sbjct: 649 WQVKEWWQYPAYQGLANRVK----PQDEAAQFFD 678


>gi|325927901|ref|ZP_08189125.1| ATP-dependent DNA helicase RecG [Xanthomonas perforans 91-118]
 gi|325541741|gb|EGD13259.1| ATP-dependent DNA helicase RecG [Xanthomonas perforans 91-118]
          Length = 717

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 247/700 (35%), Positives = 378/700 (54%), Gaps = 36/700 (5%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           PS      A LS+  GVG K +   +              DL  + P  + DR     I+
Sbjct: 9   PSLAVAGQARLSSLPGVGPKVADKFA------ARGILSVQDLWLHLPLRYEDRTRLTTIA 62

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGR 121
           ++       + G +        + R   ++ ++D + G + L FF+ +   +   F  G 
Sbjct: 63  QLQGGVPAQVEGRVEAVER-GFRFRPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FAVGT 120

Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEAL 179
           ++ V G  K  ++   +VHP Y +    +D      ++ VY +  G+     +K+I +AL
Sbjct: 121 RLRVFGTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIGQAL 180

Query: 180 SRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDEL 233
            RLP     E +    LQ +  PS+  A   +H P    D         PA++RLA +EL
Sbjct: 181 ERLPPESALELLPPHWLQDERLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQQRLAIEEL 240

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA Q++L   R   ++     +   G + Q++ + +PF  T +Q+   + I  D++Q + 
Sbjct: 241 LAHQLSLRRQRIALQRLHAPSLPGNGTLVQQLCKALPFQLTGAQQRVFEQIAHDLAQPSP 300

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + +   I + 
Sbjct: 301 MLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLTNLRGWLEPLGIRIV 360

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    R   +  +A GQA +++GTHAL Q+++ ++ L L IVDEQHRFGV QRL 
Sbjct: 361 WLAGKVTGKARAAVMAEVASGQAQVVVGTHALMQEAVIFHDLALAIVDEQHRFGVHQRLA 420

Query: 414 LTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L  K       PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+++   R  
Sbjct: 421 LRDKGAAAGSVPHQLVMTATPIPRTLAMSAYADLDVSAIDELPPGRTPVQTIVLSAERRP 480

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE--------------RFNSLHEHFT 515
           E++ER++   +EG++AYW+C  IEE +E    +  +               F +L     
Sbjct: 481 ELVERIRAACAEGRQAYWVCTLIEESEEPEKGAQGQQGGPPRIEAQAAEVTFEALSAQLP 540

Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIENAE  GLA
Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGLA 600

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+ R  GE+L
Sbjct: 601 QLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLELRGPGELL 660

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           G +Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 661 GTRQTGLASFRIADLARDAGLLPRVQVLAERLLDEAPEVA 700


>gi|240080014|ref|ZP_04724557.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA19]
 gi|268596156|ref|ZP_06130323.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA19]
 gi|268549944|gb|EEZ44963.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA19]
          Length = 680

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 239/668 (35%), Positives = 362/668 (54%), Gaps = 16/668 (2%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
             +  L K+      N     DL+ + P  + D  +   I +        + G +  H  
Sbjct: 15  ASAKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQE 67

Query: 82  FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
              + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP
Sbjct: 68  VTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHP 127

Query: 142 HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPS 201
                    +    +  VY    GL+    ++II  AL   P L + +   LL +   P 
Sbjct: 128 KIRDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLKLPR 185

Query: 202 IAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
           +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  
Sbjct: 186 LAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAALRG 245

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +G + Q + + +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++   A
Sbjct: 246 DGTLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSALTA 305

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           +E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   
Sbjct: 306 IESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKPKDEAKAKLADGSVK 365

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL +
Sbjct: 366 IAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAM 425

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE + 
Sbjct: 426 SFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESET 485

Query: 498 SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+D
Sbjct: 486 LQLQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVD 545

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    D
Sbjct: 546 VPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTD 605

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           GF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V
Sbjct: 606 GFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI--V 663

Query: 677 RGQSIRIL 684
                R L
Sbjct: 664 EAHLARWL 671


>gi|256958386|ref|ZP_05562557.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DS5]
 gi|257078303|ref|ZP_05572664.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis JH1]
 gi|294780233|ref|ZP_06745605.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis PC1.1]
 gi|307270576|ref|ZP_07551874.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX4248]
 gi|256948882|gb|EEU65514.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DS5]
 gi|256986333|gb|EEU73635.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis JH1]
 gi|294452776|gb|EFG21206.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis PC1.1]
 gi|306513157|gb|EFM81791.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX4248]
 gi|315034810|gb|EFT46742.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0027]
 gi|329575686|gb|EGG57213.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1467]
          Length = 678

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 225/694 (32%), Positives = 374/694 (53%), Gaps = 30/694 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            DLL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIATIEDLLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  ++          I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      ++ E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFA---PIYHVNKKVRQSTLVQLIRTAFEEYGSLIEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K       EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMPRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + +  +    +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAVQYDVDRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL+
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASAL 648

Query: 667 --LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             + +     + +G + R+       +EA QF  
Sbjct: 649 WQVKEWWQYPAYQGLANRVK----PQDEAAQFFD 678


>gi|99034953|ref|ZP_01314758.1| hypothetical protein Wendoof_01000414 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 673

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 273/672 (40%), Positives = 384/672 (57%), Gaps = 19/672 (2%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ 85
                I        + +DLLFY P S++DR     +S+       T    + +H S   +
Sbjct: 16  KFHSAILPKLCGGDKVVDLLFYKPLSYVDRSKL--LSDARVGEFTTFIAKVYEHQSPTFR 73

Query: 86  KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145
            R PYKI++   +  I ++FF    + L  +F  G  + ++GK++K      + HP Y+ 
Sbjct: 74  GR-PYKIIVESESQYIFIVFFNYSVKYLYKLFPIGANVIISGKLEKFAEHWQITHPDYVS 132

Query: 146 HN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
            + +Q      IE VY L  G++      II   L  LP LPEWI+  L+++K + S  E
Sbjct: 133 LDINQFKEIACIEPVYQLCRGITNKRIGNIISSNLKELPDLPEWIDDTLIKQKKWLSWRE 192

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
           +   +H P    + E     R+RLAYDEL A Q+AL L RK   KE G    +  K  ++
Sbjct: 193 SIIKLHRPSSLVEAE---VCRKRLAYDELFAYQLALKLARKNHVKERGREFIILSKYKEQ 249

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +L  + F  T  Q  AI +I +    K RM+ +LQGDVGSGKT+VAL AM   VE   QA
Sbjct: 250 VLNELSFQLTNDQTRAIDEISERQKSKYRMISLLQGDVGSGKTVVALFAMINVVENNMQA 309

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  ILA+QHY +I++    T I V ++TG   +  R+  +  +A G  +I+IGTHA
Sbjct: 310 ALMAPTTILAEQHYNWIEEVLSCTDIKVALLTGKTSRKERKIIMNELASGVLNIVIGTHA 369

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           LFQ ++ +  L L ++DEQ RFGV QR +L  K     +L +TATPIPRTL     GD++
Sbjct: 370 LFQANVTFKNLGLAVIDEQQRFGVMQRNRLVGKGENADILFVTATPIPRTLQQAMYGDVE 429

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            S + EKP  R PIKTV + I+R+ +VIE+LK  ++ G+KAYWICP IEE +E+N  +  
Sbjct: 430 CSILKEKPKSRLPIKTVTMNISRVPDVIEKLKGAINRGEKAYWICPYIEENEETNIAAAE 489

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            RF  L + F   + IIHG+++   K+ VM SFK     LL+ATTVIEVGIDV DA+I+I
Sbjct: 490 MRFQELQKTFLDKVGIIHGKLTQEQKDQVMFSFKRNEFSLLVATTVIEVGIDVPDATIMI 549

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           IENAE FGL+QLHQLRGRVGRG + S C+LLY   LSK+S ++L ++  ++DGF IAE D
Sbjct: 550 IENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYD-NLSKSSSSKLKIMCESQDGFYIAERD 608

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           +  R  G+ILG KQSG  +F  A       LL +A  +AK  +               +L
Sbjct: 609 MMLRGSGDILGTKQSGCMEFKFADLYQDKELLNLAYNNAKGAMAD-----------FELL 657

Query: 685 LYLYQYNEAFQF 696
           L +++Y     F
Sbjct: 658 LDIFEYRSRLHF 669


>gi|22537822|ref|NP_688673.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae 2603V/R]
 gi|25011766|ref|NP_736161.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae NEM316]
 gi|76788227|ref|YP_330296.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae A909]
 gi|77406424|ref|ZP_00783482.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae H36B]
 gi|77412547|ref|ZP_00788841.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae CJB111]
 gi|22534716|gb|AAN00546.1|AE014268_6 ATP-dependent DNA helicase RecG [Streptococcus agalactiae 2603V/R]
 gi|24413306|emb|CAD47385.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563284|gb|ABA45868.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae A909]
 gi|77161398|gb|EAO72415.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae CJB111]
 gi|77174957|gb|EAO77768.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae H36B]
          Length = 671

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 238/669 (35%), Positives = 372/669 (55%), Gaps = 29/669 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P+S  +G G K +    K+      +     DLL Y+P  + D      + ++ +  
Sbjct: 3   LQSPISNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDF-KSKSVFDLVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 56  KAVITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQ--PYLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK    K+ I  +    +    +D     ++ VY +  G+S     K I  A      L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDD----MQPVYRVAQGISQSTLIKAIKSAFEISAHLE 166

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E   +PI       +  + ++PF  T +Q+ ++ +IL DMS    M R+LQGDVG
Sbjct: 224 SENKSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDEILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++      + + I+T  M  A 
Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELF--PDLSIAILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR+
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARR 640

Query: 662 DAKHILTQD 670
            A  I+  +
Sbjct: 641 VASDIVKDN 649


>gi|306824746|ref|ZP_07458090.1| DNA helicase RecG [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432957|gb|EFM35929.1| DNA helicase RecG [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 671

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 241/687 (35%), Positives = 385/687 (56%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKRVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ +N   +   ++  N+PF+ T++QE ++++IL DM   + M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLNWSQEKVTEVKENLPFALTQAQEKSLQEILIDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PDLKLALLTGSLKVAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A  IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADFIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  +++
Sbjct: 524 ILVSTTVIEVGVNVSNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEGWKEDPEWRMIALHLEKREH 669


>gi|315146597|gb|EFT90613.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX4244]
          Length = 678

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 226/694 (32%), Positives = 373/694 (53%), Gaps = 30/694 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            DLL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIATIEDLLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  ++          I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      L  E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFA---PIYHVNKKVRQSTLVQLIRTAFEEYGSLVEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K       EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMPRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + +  +    +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAVQYDVDRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL+
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASAL 648

Query: 667 --LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             + +     + +G + R+       +EA QF  
Sbjct: 649 WKVKEWWQYPAYQGLANRVK----PQDEAAQFFD 678


>gi|298368995|ref|ZP_06980313.1| ATP-dependent DNA helicase RecG [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282998|gb|EFI24485.1| ATP-dependent DNA helicase RecG [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 680

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 241/666 (36%), Positives = 364/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + D +G +  L F       +     G++I   G+IK   +   M+HP  
Sbjct: 70  FKPRKQLIVQIADDSGSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
               S  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAESSGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLDRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +      S    PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIRQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAAALGGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q +   +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TMTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G QA +MAP  ILA+QH+   K++ +   + V  ++G+  +  + +A  ++A G   I 
Sbjct: 308 SGAQAAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGTVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D +++  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDELPPGRTPIKTRLVNNVRRVEVEGFVLNICRKGQQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A  E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPMLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|307276670|ref|ZP_07557788.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX2134]
 gi|306506780|gb|EFM75932.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX2134]
 gi|327536226|gb|AEA95060.1| DNA helicase RecG [Enterococcus faecalis OG1RF]
          Length = 678

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 226/694 (32%), Positives = 373/694 (53%), Gaps = 30/694 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            DLL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIATIEDLLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  ++          I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      L  E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFA---PIYHVNKKVRQSTLVQLIRTAFEEYGSLVEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K       EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMPRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + +  +    +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAVQYDVDRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL+
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASAL 648

Query: 667 --LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             + +     + +G + R+       +EA QF  
Sbjct: 649 WQVKEWWQYPAYQGLANRVK----PQDEAAQFFD 678


>gi|154493809|ref|ZP_02033129.1| hypothetical protein PARMER_03152 [Parabacteroides merdae ATCC
           43184]
 gi|154086422|gb|EDN85467.1| hypothetical protein PARMER_03152 [Parabacteroides merdae ATCC
           43184]
          Length = 698

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 239/686 (34%), Positives = 371/686 (54%), Gaps = 21/686 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IV 70
            +    GVG K +  L K      A  + + D+LFY P  +IDR    K++E++ +   +
Sbjct: 8   SIMYLPGVGPKKAEILQKE-----AGISSYEDMLFYFPYKYIDRSRFYKVAEVTGDMPYI 62

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G I    +    + R       DGTG I L++F +    + +    G    V GK  
Sbjct: 63  QMKGRILFFDTVGEGRTRRLIGKFTDGTGTIDLVWF-KGINYVLDKIKTGVDYIVFGKPT 121

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV------ 184
           +  +   + HP     +  D     +   Y+    +         ++ L    +      
Sbjct: 122 EFGHIYNIPHPDIDPLDQADKVANGLTPFYNTSEKMKKSFLNSRAIQNLQYTLLSGLNWT 181

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE +  D+L +    S  EA   +H P      +    A+ RL +DEL   Q+ +L   
Sbjct: 182 LPETLPPDVLNRIRMMSFPEAIRNVHFPES---VDKLRKAQLRLKFDELFFIQLNILRTS 238

Query: 245 KQFKKEIG-IPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
              K ++  I     G          +PF  T +Q+  +++I  DM    +M R+LQGDV
Sbjct: 239 NLRKLKLRGIVFPSVGDYFNTFYKEYLPFELTNAQKRVVREIRADMGSGRQMNRLLQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVAL++M  AV+   QA +MAP  ILA QHY  +  + ++  I V ++TG+  + 
Sbjct: 299 GSGKTLVALLSMLLAVDNHCQACMMAPTEILATQHYATVMGFLKDMDIKVALLTGSTKKK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAP 421
            R K L  IA G+  ++IGTHAL ++++ +  L L I+DEQHRFGV+QR +L  + A  P
Sbjct: 359 ERNKILPAIASGEIQLVIGTHALIEETVVFSSLGLAIIDEQHRFGVEQRSRLWTKNAVVP 418

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           HVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+TV    N+  ++ + L+  + +
Sbjct: 419 HVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTVHRYDNKKAQLYDFLRKEIGQ 478

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++ Y + P IE  ++ +++++ E F +  E F    + ++HG+M   DKE+ M  F +G
Sbjct: 479 GRQVYVVYPLIEGSEKLDYKNLEEGFETFKEVFPEYKVCMVHGKMKAADKEAEMQKFISG 538

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S C+L+    L
Sbjct: 539 EAQILMATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCVLVSSYKL 598

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLEIA 659
           S  +  RL ++ ++ +GF IAE DL+ R  G++ G +QSG      IA       +L+ A
Sbjct: 599 SNETRKRLEIMVSSNNGFEIAEADLRLRGHGDLEGTRQSGEGIDLKIANLAADGQILQYA 658

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685
           R  A+ +L +DPDL S   + +   L
Sbjct: 659 RDIAQDVLNEDPDLLSEPNRILNERL 684


>gi|315167213|gb|EFU11230.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1341]
          Length = 678

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 227/694 (32%), Positives = 373/694 (53%), Gaps = 30/694 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            DLL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIATIEDLLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  ++          I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      L  E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFA---PIYHVNKKVRQSTLVQLIRTAFEEYGSLVEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K       EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMPRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + I  +    +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAIQYDVDRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL+
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASAL 648

Query: 667 --LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             + +     + +G + R+       +EA QF  
Sbjct: 649 WQVKEWWQYPAYQGLANRVK----PQDEAAQFFD 678


>gi|315038623|ref|YP_004032191.1| ATP-dependent DNA helicase RecG [Lactobacillus amylovorus GRL 1112]
 gi|312276756|gb|ADQ59396.1| ATP-dependent DNA helicase RecG [Lactobacillus amylovorus GRL 1112]
          Length = 678

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 218/683 (31%), Positives = 365/683 (53%), Gaps = 22/683 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +  L      G+       DLLFY P  + D      + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTAADL------GSLGIYSIYDLLFYFPFRY-DELQTLPLDQIMD 56

Query: 67  ERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            + V + G ++          K+      +      + + FF +    LK+    G+++ 
Sbjct: 57  GQKVMLKGIVATEPFVSGFGYKKSRLSFKIRIDHDIVMVNFFNQ--PWLKSKIKIGQEVA 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           + GK    +  +      + F  +++ N   +  +Y +   +       +I  A+   L 
Sbjct: 115 IYGKYNVARQSLSA----FKFVAAKE-NDSGMAPIYPVNRHVKQKKLINLINLAIDSFLD 169

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + + K++++K       E    +H+P+   D E     +    + E    ++ L L+
Sbjct: 170 QVQDIVPKEIMEKYRLLHDQEIIQKMHHPKNGHDAELA---KRSAIFREFFIFELQLALL 226

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
                K+ G P   + K    + +++PF  +  Q+  + +I  DM    +M R+LQGDVG
Sbjct: 227 ANHDGKQQGYPKKYDLKEIANLTKSLPFELSDDQKKVVNEIFADMHSDGQMRRLLQGDVG 286

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   + V ++TGN     
Sbjct: 287 SGKTIVAVYAIFAAISAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKTLE 346

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+    +  G  +++IGTHAL Q ++ + KL LVI+DEQHRFGV QR  L  K   P +
Sbjct: 347 RREIYCELTDGTINVVIGTHALIQKNVIFKKLGLVIIDEQHRFGVGQRQALINKGDNPDI 406

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +     +++ +V + +   L +G 
Sbjct: 407 LAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISAWKTSSQMKDVYKLMYEQLDQGF 466

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I E +  + ++  E    L   F   ++ ++HG+M    K+ +M +F +G  
Sbjct: 467 QIYAVTPLITESETLDLKNAEELHEKLSHDFPDQNVVLLHGQMPGAKKDEIMSAFASGEI 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S CI +  P  + 
Sbjct: 527 NILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCIFIADPK-TD 585

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +   R+ ++  T +GF +AEEDLK R EG++ G  QSG+P+F +     + + L +A+K 
Sbjct: 586 SGKARMKIIAATNNGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVAQKV 645

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
           A+ ++  DP+LTS    S++ +L
Sbjct: 646 ARELVKADPELTSPEHNSLKQVL 668


>gi|322392696|ref|ZP_08066156.1| DNA helicase RecG [Streptococcus peroris ATCC 700780]
 gi|321144688|gb|EFX40089.1| DNA helicase RecG [Streptococcus peroris ATCC 700780]
          Length = 671

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 240/687 (34%), Positives = 377/687 (54%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGVSQTGLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K      ++A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMPRSQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K +  G+ +N   +    +   +PF  T++QE+++ +IL DM   + M R+LQGDVGSG
Sbjct: 226 NKVQGSGLVLNWSQEKLTAVKEKLPFDLTQAQENSLHEILTDMKSDHHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMYAAVTAGYQAALMVPTEILAEQHFESLESLF--PDLKLALLTGSLKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
             LE IA G   +IIGTHAL QD + Y KL L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 TVLETIAKGDVDVIIGTHALIQDGVDYAKLGLIIIDEQHRFGVGQRRILREKGENPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + P GRKPI T  +   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSVIDQMPTGRKPIVTRWVKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF   + +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAKVALLHGKMKSDEKDQIMQEFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G KQSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTKQSGLPEFHVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I +            I + L   +Y
Sbjct: 643 SYISSLPNWREDPEWHMIALHLEKKEY 669


>gi|90407853|ref|ZP_01216029.1| ATP-dependent DNA helicase RecG [Psychromonas sp. CNPT3]
 gi|90311028|gb|EAS39137.1| ATP-dependent DNA helicase RecG [Psychromonas sp. CNPT3]
          Length = 690

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 270/695 (38%), Positives = 390/695 (56%), Gaps = 26/695 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS   GVG K    L+KI      N    +DLLF+ P  + DR     IS++ +   V+
Sbjct: 7   PLSALHGVGIKMLEKLAKI------NMHNVVDLLFHLPLHYQDRACVYPISQLQDGMQVS 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I      Q  KRR  K  + D +G   L FF+      +N F EGR I   G+ K+
Sbjct: 61  IAGRIVSCQ-VQKGKRRILKCKIRDESGIACLNFFHFNVAQ-QNAFTEGRLIQCFGEFKR 118

Query: 132 LKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPE 187
               + + HP Y F + +  N     +  VY    GL  +  +K+++++L  L    + E
Sbjct: 119 GYQGVEVTHPEYHFIDQRQENTQGGHLTPVYPSTDGLKQNNLRKLVLQSLQLLQQNGIEE 178

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIALLLM 243
            +   LL      S+ +A   +H P      E     + PA++RL  +ELLA Q+ +L+M
Sbjct: 179 VLPTHLLS--HPLSLQDALLYLHQPPTDACIEQLEARSHPAQQRLILEELLAQQVNMLMM 236

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   +K   + I     +A K+L  +PF+ T++Q     +I  D+ +   M+R++QGDVG
Sbjct: 237 RSAVQKNKSMDIAKSTILAPKLLHALPFTATQAQLRVGIEIADDLQKNIPMMRLVQGDVG 296

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA +A  + +EAG Q  +MAP  +LA+QH    + +     + V +++G M    
Sbjct: 297 SGKTLVAALAALSVIEAGYQVALMAPTELLAEQHRLTFQNWFAPLGVRVGMLSGKMKVKE 356

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           +R     I  G A ++IGTHALF D++ +  L L+IVDEQHRFGV QRL L  K  +   
Sbjct: 357 KRSQTLDIQLGLAQMVIGTHALFSDNVVFKNLQLIIVDEQHRFGVHQRLALLSKGQSGDV 416

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L MTATPIPRTL +T+  D+ IS I E PAGR P++T ++P  R  ++I+R+    
Sbjct: 417 APHQLTMTATPIPRTLAMTAYADLKISVIDELPAGRMPVQTTVLPEMRRGDIIKRVYQAC 476

Query: 480 -SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            ++G++AYW+C  I E +    ++  +  N+L        I ++HGRMS ++K+ VMD+F
Sbjct: 477 KNQGRQAYWVCTLICESEVLQCQAAEDIANNLQLSLVDLRIGLVHGRMSALEKQYVMDAF 536

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+G   LL+ATTVIEVG+DV +AS++IIENAE  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 537 KSGELDLLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGRGTVASHCVLLYK 596

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RL +L+ + DGF IAE+DL  R  GE+LG KQ+G+  F IA      SLL 
Sbjct: 597 DPLSNVAKKRLQILRRSNDGFYIAEQDLLIRGPGEVLGTKQTGVASFKIADLLRDQSLLP 656

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
             ++ A  +LTQ P   +    + R L     Y +
Sbjct: 657 DVQRLAGLLLTQHPQYITPL--TTRWLGDKQDYGQ 689


>gi|325922280|ref|ZP_08184061.1| ATP-dependent DNA helicase RecG [Xanthomonas gardneri ATCC 19865]
 gi|325547233|gb|EGD18306.1| ATP-dependent DNA helicase RecG [Xanthomonas gardneri ATCC 19865]
          Length = 714

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/697 (35%), Positives = 378/697 (54%), Gaps = 33/697 (4%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           PS      A LS+  GVG K +   +              DL  + P  + DR     I+
Sbjct: 9   PSLAVAGQASLSSLPGVGPKVAEKFA------ARGIFTLQDLWLHLPLRYEDRTRLTTIA 62

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGR 121
           ++       I G +        + R   ++ ++D + G + L FF+ +   +   F  G 
Sbjct: 63  QLQGGVPAQIEGRVDAMER-GFRFRPVLRVAVSDDSHGTLVLRFFHFRAAQVAQ-FAPGT 120

Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEAL 179
           ++ V G  K  +N   +VHP Y +    +D      ++ VY +  G+     +K+I +AL
Sbjct: 121 RVRVFGTPKPGQNGWEIVHPSYRVLAEGEDAGLGDSLDPVYPVLEGVGPATLRKLIGQAL 180

Query: 180 SRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDEL 233
            RLP     E +    LQ +  PS+  A   +H P    D         PA++RLA +EL
Sbjct: 181 ERLPPEAALELLPPHWLQDEQLPSLRAALLTMHRPPVNTDPQQLLAGGHPAQQRLALEEL 240

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA Q++L   R   ++     +   G + Q++   +PF  T +Q+   + I +D+++ + 
Sbjct: 241 LAHQLSLRRQRIALQRFRAPRLPGNGTLVQQLRAALPFQLTGAQQRVFEQIARDLAKPSP 300

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + +   + + 
Sbjct: 301 MLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLTNLRGWLEPLGVRIV 360

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    R  A+  +A GQA +++GTHAL Q+++ ++ L L I+DEQHRFGV QRL 
Sbjct: 361 WLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHRFGVHQRLA 420

Query: 414 LTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L  K       PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+++   R  
Sbjct: 421 LRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTIVLSAERRP 480

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE-----------RFNSLHEHFTS-S 517
           +++ER++   +EG++AYW+C  IEE +E    +               F +L        
Sbjct: 481 DLVERIRAACAEGRQAYWVCTLIEESEEPGKGAPPGPPKIEAQAAEVTFEALSAQLPGVR 540

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIENAE  GLAQLH
Sbjct: 541 VALVHGRMKPAEKQKAMLDFKQGHTDLLVATTVIEVGVDVPNASLMIIENAERLGLAQLH 600

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+ R  GE+LG +
Sbjct: 601 QLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLELRGPGELLGTR 660

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 661 QTGLASFRIADLARDAGLLPRVQVLAERLLAEAPEIA 697


>gi|94991096|ref|YP_599196.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS10270]
 gi|94544604|gb|ABF34652.1| ATP-dependent DNA helicase recG [Streptococcus pyogenes MGAS10270]
          Length = 671

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 242/672 (36%), Positives = 375/672 (55%), Gaps = 30/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D      + ++ +  
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDF-KSKSVFDLVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 56  KAVITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQ--PYLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK    K+ I  +    +    +D     I+ VY +  G+S     K I  A      L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDD----IQPVYRVAQGISQSTLIKAIKSAFEIDAHLE 166

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + + E   +PI       +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDVG
Sbjct: 224 AENRSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++      + + I+T  M  A 
Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELF--PDLSIAILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LVMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFKVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPDL 673
            +  I++ DP+ 
Sbjct: 641 VSAAIVS-DPNW 651


>gi|171779290|ref|ZP_02920261.1| hypothetical protein STRINF_01138 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282346|gb|EDT47773.1| hypothetical protein STRINF_01138 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 671

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 241/684 (35%), Positives = 374/684 (54%), Gaps = 29/684 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + +   +G+G K +    K+      +     DLL Y+P  + D      I ++ +  
Sbjct: 3   LQSSIEELKGLGPKSAEKFHKL------DIYTIEDLLLYYPFRYEDF-KSKSILDLVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              I G +   ++ Q    KR      +  G   I + FF +    L +    G  + + 
Sbjct: 56  KAVIVGTVVTPANVQYYGYKRNRLSFKIKQGEAVIAISFFNQ--PYLADKVELGSDVAIF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-- 184
           GK   LK+ +  +    I    +D     ++ VY +  G+S +   K I  A +      
Sbjct: 114 GKWDALKSAVTGMK---ILAQVEDD----MQPVYRVAQGISQNALIKAIKSAFALGAQNW 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE + +  L K      A+A   +H P   KD      A  R+ ++EL   Q+ L  ++
Sbjct: 167 LPENLPQVFLDKYRLLGRAKATEAMHFP---KDLAEYKQALRRIKFEELFYFQMNLQALK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
              K E   + I  + +     + ++PF  T  Q+ ++ DIL DM     M R+LQGDVG
Sbjct: 224 ADNKSEANGLMIAYDEQKVADKIASLPFDLTGGQKRSLSDILSDMRSGGHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM AA  AG Q+ +M P  ILA+QH+E + +      + + I+T  M  A+
Sbjct: 284 SGKTVVASLAMYAAYTAGYQSALMVPTEILAEQHFESLMQLF--PDLSIAILTSGMKAAN 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++ AL  IA G   +I+GTHAL QD++ Y++L  VI DEQHRFGV QR    +K   P V
Sbjct: 342 KKAALAAIADGSVDMIVGTHALIQDTVSYHRLGFVITDEQHRFGVNQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++D V++ +K  L +G 
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLDIVLDWVKKELPKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY I P IEE +  + ++ +     L E+F   +++A++HGRM + +KE++M  FK   
Sbjct: 462 QAYVISPLIEESESLDLKNAIALHEDLSEYFADCANVALMHGRMKNEEKEAIMQDFKAQK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG++ S  IL+ +P  +
Sbjct: 522 SQVLVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGDKQSYAILVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T DGF +AE DLK R  GEI G +QSG+P+F +A      ++LE AR+
Sbjct: 581 ETGKKRMKIMTETTDGFALAEADLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARR 640

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
            A  I++        + Q I   L
Sbjct: 641 VASQIVSNPNWRQEPQWQIITQNL 664


>gi|58038545|ref|YP_190509.1| ATP-dependent DNA helicase RecG [Gluconobacter oxydans 621H]
 gi|58000959|gb|AAW59853.1| ATP-dependent DNA helicase RecG [Gluconobacter oxydans 621H]
          Length = 716

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 258/703 (36%), Positives = 405/703 (57%), Gaps = 21/703 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE-- 63
           L PLFA L++  G+G +++  L KI     A   R +DLLF  P   +DR     +++  
Sbjct: 27  LAPLFASLTSLPGIGPRHATLLEKI-----AGGRRVLDLLFTLPERVVDRRILRTVADGY 81

Query: 64  -ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFY-RKTEMLKNVFFEGR 121
            ++   I+T    +        +  +P  I   D TG++ L+FF  R           G 
Sbjct: 82  NLAPGEILTAHVRVLALRKAG-RPGQPSIIRTEDDTGKLDLVFFQTRNMP----SPTIGA 136

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           ++ V+GK    +  + M  P ++   ++  +FP +E V+ L  GL     +K +  AL+ 
Sbjct: 137 ELLVSGKTGTFQGELTMPQPDHVVSWAKRDSFPSLEPVWPLTAGLFPYTVRKAMRAALAL 196

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK-AKDFEWTSPARE---RLAYDELLAGQ 237
           LP LPEW++  L+ ++ +PS  +A  ++ +P     +  W         RLA DELLA Q
Sbjct: 197 LPDLPEWLDPALVTQRKWPSFTQALRLMQSPEIIPPEIAWEPVRNRALSRLAADELLADQ 256

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +   L R + ++  G      G++  ++LR     PT +Q  AI +I  D+S    M+R+
Sbjct: 257 LCFGLARLKARERHGRSFPGTGELQAEMLRRFGHKPTHAQTLAIAEIAADLSASTPMMRL 316

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVG+GKT VA+ AM   VE+G QA +MAP  ILA+QH+E + +           ++G
Sbjct: 317 LQGDVGAGKTFVAMNAMLQTVESGAQAALMAPTEILARQHFETLSRLC---PTECVYLSG 373

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +  A RRK L  IA G A I++GTHALFQD + ++ L L ++DEQHRFGV+QR+ L+ K
Sbjct: 374 TIKGAARRKTLAAIADGTAKIVVGTHALFQDGVTFHDLGLAVIDEQHRFGVRQRMNLSAK 433

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             A  +L+MTATPIPRTL L   G++ +S++  KP GR+PI+T +  ++ +D V+  +  
Sbjct: 434 GEATDILVMTATPIPRTLQLMEWGEMSVSRLDSKPPGRQPIRTTLHSMDSLDSVLAGISR 493

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            L +G + +W+CP IE  +     +  ER+ SL + F   + + HG+     ++  +D F
Sbjct: 494 ALRDGVQVFWVCPLIENSETQAAAAAEERWASLEQRFEGLVGLAHGKQDITVRQEALDRF 553

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + G  +LL+ATTVIEVG+D+  AS+++IE AE FGLAQLHQLRGRVGRG + S C+LL+ 
Sbjct: 554 RLGKTRLLVATTVIEVGVDIPAASVMVIEQAERFGLAQLHQLRGRVGRGSKQSFCLLLHD 613

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
              +  +  RLS+L++T DGFLIA+ED + R  G+I G +QSG+P F +AQ      LL 
Sbjct: 614 RAATPTAVRRLSLLRDTNDGFLIADEDYRIRGGGDIAGDRQSGLPGFRLAQGARLSLLLT 673

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             ++D++  + ++P L   RG ++R+LL ++  N+  + + +G
Sbjct: 674 AMQQDSEREIARNPHLEGPRGHALRLLLEIFDRNDPDRLLISG 716


>gi|46908043|ref|YP_014432.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|254826147|ref|ZP_05231148.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J1-194]
 gi|254933283|ref|ZP_05266642.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes HPB2262]
 gi|46881313|gb|AAT04609.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|293584843|gb|EFF96875.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes HPB2262]
 gi|293595387|gb|EFG03148.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J1-194]
 gi|328473539|gb|EGF44376.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes 220]
 gi|332312252|gb|EGJ25347.1| ATP-dependent DNA helicase recG [Listeria monocytogenes str. Scott
           A]
          Length = 682

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 238/680 (35%), Positives = 381/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKISVGETVTISGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
            K + ++           S++     +E VY L   L     +K    A       + E 
Sbjct: 119 DKSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P+  ++      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPSNLLEKYQLMDRLEAVRILHFPKNNEEL---KQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F N     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNNKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H
Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 651 MIFEEDMLENKNYEKLVALL 670


>gi|254804394|ref|YP_003082615.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14]
 gi|254667936|emb|CBA04143.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14]
          Length = 680

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 236/666 (35%), Positives = 363/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLEKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAIGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T P+ +RL +DELLA Q+++ L R++        ++ +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTLPSWQRLKFDELLAQQLSMRLARQKRIGGSATALSGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q +   +PF+ T +Q+  + +I +DM+Q   M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALRHALPFALTDAQKKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   + V  ++G+  +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGCDVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|313889712|ref|ZP_07823355.1| ATP-dependent DNA helicase RecG [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313122009|gb|EFR45105.1| ATP-dependent DNA helicase RecG [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 671

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 235/678 (34%), Positives = 378/678 (55%), Gaps = 25/678 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PLS  +G G K +    K+      N     +LL Y+P  + D      + ++ +  
Sbjct: 3   LHSPLSELKGFGPKSAEKFQKL------NIFTIEELLLYYPFRYEDF-KSKSVFDLQDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              +TG +   ++ Q    +  ++      G++ +   +     L +    G+++ V GK
Sbjct: 56  KAVLTGTVVTPATVQYYGFKRNRLSFKIKQGDLVIAINFFNQPYLADKVELGKEVAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPVLP 186
             + K  +  +   ++     D     ++ VY +  G+S     K I  A     L  + 
Sbjct: 116 WDQKKTSVTGMK--FLMSLEDD-----LQPVYHVVQGVSQAALIKAIKSAFDTNLLSEIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E I + L+QK       EA   +H P    D      A  R+ ++EL   Q+ L +++  
Sbjct: 169 ENIPELLIQKYRLMGRQEAIRAMHFP---ADLPEYRQALRRIKFEELFYFQMQLQVLKHA 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K +  G+ I  + K  ++++  +PFS T +Q +++++IL+DM+    M R+LQGDVGSG
Sbjct: 226 NKSETAGLAIAYDKKALEQVIAGLPFSLTGAQLNSLEEILKDMASGQHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT++A +AM A   AG Q+ +M P  ILA+QHY+ +       ++ + I+   M  A +R
Sbjct: 286 KTVIASLAMYATYTAGYQSALMVPTEILAEQHYQSLTNLF--PELSIAILKSGMKVAAKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
            AL  IA G   +I+GTHAL QD++QY+KL LVI DEQHRFGV+QR    +K   P VL+
Sbjct: 344 SALAAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S I + PAGRKPI T  +   ++ +V+  ++  +++G + 
Sbjct: 404 MTATPIPRTLAITAYGEMDVSIIDQLPAGRKPIVTRWVKHQQLHDVLTWMRQEIAKGAQV 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ V     L  +F   + IA++HG+M + DK+++M +FKN    
Sbjct: 464 YVISPLIEESEALDLKNAVALEQELKNYFQGDARIALMHGKMKNEDKDAIMQAFKNQEID 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LL++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  ++ 
Sbjct: 524 LLVSTTVIEVGVNVPNATIMLIMDADRFGLSQLHQLRGRVGRGHKQSYALLVANPK-TET 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGF++AE DLK R  GEI G +QSG+P+F  A       +LE AR+ A
Sbjct: 583 GKERMRIMTETSDGFVLAEADLKMRGSGEIFGTRQSGIPEFKTADLLEDYPILEEARRVA 642

Query: 664 KHILTQDPDLTSVRGQSI 681
             I +Q    T  R   I
Sbjct: 643 SEIASQANWQTDQRWHKI 660


>gi|256761066|ref|ZP_05501646.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T3]
 gi|256682317|gb|EEU22012.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T3]
          Length = 678

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 227/694 (32%), Positives = 374/694 (53%), Gaps = 30/694 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            DLL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIATIEDLLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  +++         I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLMFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      L  E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFA---PIYHVNKKVRQSTLVQLIRTAFEEYGSLVEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K       EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMPRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + I  +    +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAIQYDVDRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL+
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASSL 648

Query: 667 --LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             + +     + +G + R+       +EA QF  
Sbjct: 649 WQVKEWWQYPAYQGLANRVK----PQDEAAQFFD 678


>gi|42520662|ref|NP_966577.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410402|gb|AAS14511.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 673

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 273/672 (40%), Positives = 384/672 (57%), Gaps = 19/672 (2%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ 85
                I        + +DLLFY P S++DR     +S+       T    + +H S   +
Sbjct: 16  KFHSAILPKLCGRDKVVDLLFYKPLSYVDRSKL--LSDARVGEFTTFIAKVYEHQSPTFR 73

Query: 86  KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145
            R PYKI++   +  I ++FF    + L  +F  G  + ++GK++K      + HP Y+ 
Sbjct: 74  GR-PYKIVVESESQYIFIVFFNYSVKYLYKLFPIGANVIISGKLEKFAEHWQITHPDYVS 132

Query: 146 HN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
            + +Q      IE VY L  G++      II   L  LP LPEWI+  L+++K + S  E
Sbjct: 133 LDINQFKEIACIEPVYQLCRGITNKRIGNIISSNLKELPDLPEWIDDTLIKQKKWLSWRE 192

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
           +   +H P    + E     R+RLAYDEL A Q+AL L RK   KE G    +  K  ++
Sbjct: 193 SIIKLHRPSSLVEAE---VCRKRLAYDELFAYQLALKLARKNHVKERGREFIILSKYKEQ 249

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +L  + F  T  Q  AI +I +    K RM+ +LQGDVGSGKT+VAL AM   VE   QA
Sbjct: 250 VLNELSFQLTNDQTRAIDEISERQKSKYRMISLLQGDVGSGKTVVALFAMINVVENNMQA 309

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  ILA+QHY +I++    T I V ++TG   +  R+  +  +A G  +I+IGTHA
Sbjct: 310 ALMAPTTILAEQHYNWIEEVLSCTDIKVALLTGKTSRKERKIIMNELASGVLNIVIGTHA 369

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           LFQ ++ +  L L ++DEQ RFGV QR +L  K     +L +TATPIPRTL     GD++
Sbjct: 370 LFQANVTFKNLGLAVIDEQQRFGVMQRNRLVGKGENADILFVTATPIPRTLQQAMYGDVE 429

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            S + EKP  R PIKTV + I+R+ +VIE+LK  ++ G+KAYWICP IEE +E+N  +  
Sbjct: 430 CSILKEKPKSRLPIKTVTMNISRVPDVIEKLKGAINRGEKAYWICPYIEENEETNIAAAE 489

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            RF  L + F   + IIHG+++   K+ VM SFK     LL+ATTVIEVGIDV DA+I+I
Sbjct: 490 MRFQELQKTFLDKVGIIHGKLTQEQKDQVMFSFKRNEFSLLVATTVIEVGIDVPDATIMI 549

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           IENAE FGL+QLHQLRGRVGRG + S C+LLY   LSK+S ++L ++  ++DGF IAE D
Sbjct: 550 IENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYD-NLSKSSSSKLKIMCESQDGFYIAERD 608

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           +  R  G+ILG KQSG  +F  A       LL +A  +AK  +               +L
Sbjct: 609 MMLRGSGDILGTKQSGCMEFKFADLYQDKELLNLAYNNAKGAMAD-----------FELL 657

Query: 685 LYLYQYNEAFQF 696
           L +++Y     F
Sbjct: 658 LDIFEYRSRLHF 669


>gi|110640048|ref|YP_680258.1| ATP-dependent DNA helicase RecG [Cytophaga hutchinsonii ATCC 33406]
 gi|110282729|gb|ABG60915.1| ATP-dependent DNA helicase [Cytophaga hutchinsonii ATCC 33406]
          Length = 696

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 237/685 (34%), Positives = 368/685 (53%), Gaps = 21/685 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE- 67
           L   +   +G+G + +  L+  +         F DLL+Y+P    DR     I +I E+ 
Sbjct: 5   LDTKVEFLKGIGPQKAALLNTELR-----IFTFEDLLYYYPFRHEDRSKIYAIKDIHEDL 59

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             + + G I+  SS  +  ++     + D TG + L++F +    ++          V G
Sbjct: 60  PYIQVRGRITGISSQGVGPKKRLIAYVQDDTGILELVWF-QGGAWIEKNILPNTIYVVFG 118

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-----VDLFKKIIVEALSRL 182
           K      ++ +VHP    + S+D     ++ VY++   L           K+  + +  +
Sbjct: 119 KPNLYGRKLNVVHPEMEVY-SEDKTEKGLQPVYNVTEKLKARGMDSKAISKLTEKLVKEI 177

Query: 183 PV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              LPE +   ++ +    S A+A   IH P  A   E    A+ RL ++EL   QI LL
Sbjct: 178 ASKLPEILPAAIIDEYKLISRAQAMEWIHLPPNAASVE---KAKARLKFEELFLIQIKLL 234

Query: 242 LMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +   K    G   N    +      ++PF  T +Q+  +K+I +D+    +M R+LQG
Sbjct: 235 HQKTYRKIHYRGFVFNHIPTLNVFYKEHLPFDLTDAQKRVVKEIYKDVCSGKQMNRLLQG 294

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+V  + M  A++ G QA ++AP  ILA QHYE +K+      + V  +TG+  
Sbjct: 295 DVGSGKTIVGFLCMLMAIDNGYQACLIAPTEILAAQHYEGLKELAAKVGLTVAKLTGSSK 354

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT- 419
           +  R      +  G  +I+IGTHA+ +D +Q+  L + I+DEQHRFGV QR KL +K T 
Sbjct: 355 KKERDVIHRDLLDGSLNILIGTHAILEDIVQFKNLGICIIDEQHRFGVAQRAKLWKKNTE 414

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PHVL+MTATPIPRTL +T  GD+DIS I + PAGRKPI T          V   ++  
Sbjct: 415 LPPHVLVMTATPIPRTLAMTLYGDLDISVIDQMPAGRKPISTSHKFDKDRLLVFGFIRKQ 474

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           + EG++ Y + P IEE ++ + + +++ F S++  F    + I+HGRM   DK+  M  F
Sbjct: 475 ILEGRQIYIVYPLIEENEKLDLKDLMDGFESINRAFPEFPVGILHGRMKPADKDFEMQRF 534

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G  K+++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S C+L+  
Sbjct: 535 VKGETKIMVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGADQSYCVLMTS 594

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             LS N+ TR+  +  T +GF IA+ DLK R  G++ G +QSG+    IA        L+
Sbjct: 595 HKLSANTKTRIETMVRTTNGFEIADVDLKLRGPGDLAGTQQSGVLDLRIADLAQDSQTLQ 654

Query: 658 IARKDAKHILTQDPDLTSVRGQSIR 682
           ++R+ A  +L  DP+L     + +R
Sbjct: 655 LSRQSAMDLLDSDPELLKPENRMLR 679


>gi|56808185|ref|ZP_00365964.1| COG1200: RecG-like helicase [Streptococcus pyogenes M49 591]
 gi|209559895|ref|YP_002286367.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes NZ131]
 gi|209541096|gb|ACI61672.1| Putative ATP-dependent DNA helicase [Streptococcus pyogenes NZ131]
          Length = 671

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 242/672 (36%), Positives = 375/672 (55%), Gaps = 30/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D      + ++ +  
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDF-KSKSVFDLVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 56  KAVITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQ--PYLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK    K+ I  +    +    +D     ++ VY +  G+S     K I  A      L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDD----MQPVYRVAQGISQSTLIKAIKSAFEINAHLE 166

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E   +PI       +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDVG
Sbjct: 224 AENKSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++      + + I+T  M  A 
Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELF--PDLSIAILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPDL 673
            +  I++ DP+ 
Sbjct: 641 VSAAIVS-DPNW 651


>gi|304383222|ref|ZP_07365695.1| DNA helicase RecG [Prevotella marshii DSM 16973]
 gi|304335693|gb|EFM01950.1| DNA helicase RecG [Prevotella marshii DSM 16973]
          Length = 698

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 237/689 (34%), Positives = 379/689 (55%), Gaps = 22/689 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++ L   +   +GVG K    LSK +     +   + DLL Y+P  ++DR     I E+ 
Sbjct: 1   MSILEQDIMYLQGVGPKRKEILSKEL-----HIESYRDLLEYYPYKYVDRSRIYAIDELR 55

Query: 66  EERI-VTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            +   V I G I     +   +RR        DG G + L++F + T+ +   +      
Sbjct: 56  SDMPFVQIKGRILSFEEYDTGRRRKRIIAHFTDGHGVVDLVWF-QGTQYVYKNYRVNTDY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEA 178
            V G+      R    HP         ++   ++  Y         G++    +K+    
Sbjct: 115 IVFGRPSLYNGRYQFAHPDIENAAQLQLSTMGMQPYYVTTERMKKAGITSRAIEKLTKTL 174

Query: 179 LSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + ++P  LPE +   + Q     S  EA   IH P+ A+D   TS AR RL ++EL   Q
Sbjct: 175 IEKIPSPLPETLPPFITQPLHLISRDEACRKIHYPQSAED---TSRARLRLKFEELFYVQ 231

Query: 238 IALLLMRK-QFKKEIGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L       +K  G      G +  +    N+PF  T++Q+  I++I  DM+  ++M 
Sbjct: 232 LNILRYASDHKRKYRGYVFTRVGSLFNRFYSSNLPFPLTEAQKRVIREIRSDMASGSQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA IMAP  ILA+QH   I  + +   + VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLIALDNGFQACIMAPTEILAEQHLTTIGTFLKGMDVRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG +    R+  LE +A+G+  I++GTHA+ ++++Q+ +L   +VDEQHRFGV QR +L 
Sbjct: 352 TGMVKGRRRQAILEGLANGEVQILVGTHAVIEENVQFARLGFAVVDEQHRFGVAQRARLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+     ++  + + 
Sbjct: 412 SKSENPPHVLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTLHKYDTQLTSLYQS 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  +  G++ Y + P I E ++ + +++ + + +L E F    ++ +HG+M   +KE+ 
Sbjct: 472 IRREIELGRQVYIVFPLISESEKIDLKNLEDGYAALLEIFPEYRLSKVHGKMKSAEKEAE 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++L+ATTVIEVG++V +AS++II +A+ FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MQRFISGETQILVATTVIEVGVNVPNASVMIIMDAQRFGLSQLHQLRGRVGRGAEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+    LS  +  R+ ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVSPFKLSAETRRRIDIMCETNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             ++++AR++A+ I+  DP         +
Sbjct: 652 GQIVQLAREEARKIIETDPTCEKAEYAML 680


>gi|289209171|ref|YP_003461237.1| ATP-dependent DNA helicase RecG [Thioalkalivibrio sp. K90mix]
 gi|288944802|gb|ADC72501.1| ATP-dependent DNA helicase RecG [Thioalkalivibrio sp. K90mix]
          Length = 687

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 250/706 (35%), Positives = 380/706 (53%), Gaps = 35/706 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+ F+GVG   +  L+++         +  DLL + P  F DR     I  +    
Sbjct: 3   LQTPLTGFKGVGPAVAERLARL------GLEQARDLLLHLPLRFEDRTRLTPIRALRPGL 56

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
                G ++ H+    ++RR   + L +    I L FF+  +   +     G +I   G+
Sbjct: 57  SALFEGRVT-HAEVVHRRRRMLVVTLEEDGASILLRFFHFGSGQQRR-LSPGTRIRAFGE 114

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
            + +   +  VHP      ++       +  +Y    G+S  L ++++ EAL     LP+
Sbjct: 115 PRGMPGAMECVHPELQVVGTKPPVLETHLTPIYPTTEGISQKLLRQLVTEALPTTEQLPD 174

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF-------EWTSPARERLAYDELLAGQIAL 240
            + +  L ++  P +  A   +H+P    +        E   PAR RLA +EL A Q+A 
Sbjct: 175 LLPE--LNQRQLPGLHTALQQLHHPPARAEVLDALDTAEQRGPARTRLALEELTAHQLAR 232

Query: 241 LLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +   +  +     P I   G + +++   +PF+PT +QE  I ++ +D+++   M R++Q
Sbjct: 233 MEQNRTPQDARRAPVIRPAGALWRQLRDQLPFAPTSAQERVIHEVREDLARPTPMNRLVQ 292

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA+ A  AAVEAG Q   MAP  +LA+QH   + ++ +   + V  + G  
Sbjct: 293 GDVGSGKTLVAVAAALAAVEAGHQVAFMAPTELLARQHGRNLAQWLEPLGVSVAWLGGRQ 352

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ--K 417
             + R + L  +A G   + IGTHALFQ+ +++++L L I+DEQHRFGV QR+ L     
Sbjct: 353 GASERGQLLSELASGHRQVAIGTHALFQEEVRFHRLGLAIIDEQHRFGVHQRMALRDKGN 412

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPRTL +    D+D S I E+P GR P++T +I   R DEVI+R++ 
Sbjct: 413 GQMPHQLIMTATPIPRTLAMALYADLDSSVIDERPPGRTPVRTALISHERRDEVIDRIRA 472

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
               G +AYW+CP +EE ++    S       L E     SI + HGRM   ++++VM+ 
Sbjct: 473 ACGSGTQAYWVCPLVEESEQLEAESAEATAERLREALPELSIGLAHGRMKGPERDTVMER 532

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S+C+LLY
Sbjct: 533 FRAGALDLLVATTVIEVGVDVPNASLMIIENAERMGLSQLHQLRGRVGRGNTASACVLLY 592

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL + +  RL  ++ T+DGF IAE DL+ R  GE+LG +Q+G   F +A       LL
Sbjct: 593 RPPLGETARERLEAMRRTDDGFEIAEVDLRLRGPGELLGTRQTGDRSFRVADWSRDQDLL 652

Query: 657 EIARKDAKHILTQDPDLTSVRGQSI--RILLYLYQYNEAFQFIRAG 700
           E A + A   + +DP     R  ++  R L        A ++   G
Sbjct: 653 EEATELALR-MREDP----PRAAALIERWL------GSATRYATVG 687


>gi|77414524|ref|ZP_00790670.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae 515]
 gi|77159422|gb|EAO70587.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae 515]
          Length = 671

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 238/669 (35%), Positives = 372/669 (55%), Gaps = 29/669 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P+S  +G G K +    K+      +     DLL Y+P  + D      + ++ +  
Sbjct: 3   LQSPISNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDF-KSKSVFDLVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 56  KAVITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQ--PYLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK    K+ I  +    +    +D     ++ VY +  G+S     K I  A      L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDD----MQPVYRVAQGISQSTLIKAIKSAFEISAHLE 166

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E   +PI       +  + ++PF  T +Q+ ++ +IL DMS    M R+LQGDVG
Sbjct: 224 SENKSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDEILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++      + + I+T  M  A 
Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELF--PDLSIAILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQXFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR+
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARR 640

Query: 662 DAKHILTQD 670
            A  I+  +
Sbjct: 641 VASDIVKDN 649


>gi|261879120|ref|ZP_06005547.1| DNA helicase RecG [Prevotella bergensis DSM 17361]
 gi|270334216|gb|EFA45002.1| DNA helicase RecG [Prevotella bergensis DSM 17361]
          Length = 700

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 239/687 (34%), Positives = 382/687 (55%), Gaps = 23/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +    GVG K    LSK +     N   + DLL Y+P  ++DR    +I E+S E 
Sbjct: 5   LDQDIMYLPGVGPKKKEILSKEL-----NIHTWGDLLEYYPYKYVDRTKIYRIMELSGEM 59

Query: 69  I-VTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             V + G I     F +  +++       DG G + L++F R  + +   +  G +  V 
Sbjct: 60  PFVQVKGKILSFEEFPMSARKKRVVAHFTDGFGIVDLVWF-RGAQYVYKNYKVGEEYIVF 118

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALSR 181
           GK    + R    HP              ++  Y+        G+     +++    +SR
Sbjct: 119 GKPSVYQGRYQFAHPEIDRVADLKTEEMRMQPYYNTTETMKKRGMQSRAVERLTKTLVSR 178

Query: 182 LPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +P   + E +   ++ + +  S  +A+  IH P+   D +     + RL  +EL   Q++
Sbjct: 179 IPEGAIQEALLPSMVSRLNLISREDAYRKIHYPKSLDDVQRA---QVRLKLEELFYVQLS 235

Query: 240 LL-LMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +L    +  +K  G   +  G I  Q    N+PF  T++Q+  + +I  DM   ++M R+
Sbjct: 236 ILRYASEHRRKYKGYVFDKIGAIFNQFFHENLPFDLTQAQKRVMHEIRDDMRSGHQMNRL 295

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL+ M  A++ G QA IMAP  ILA+QH + I+ + +N  + VE++TG
Sbjct: 296 LQGDVGSGKTLVALMTMLIAIDNGFQACIMAPTEILAEQHLDTIRTFLRNMPVRVELLTG 355

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +    R++ L+ +A G   I++GTHA+ +D++Q+ +L + +VDEQHRFGV QR KL  K
Sbjct: 356 IVKGKKRKEILQNLAEGNIDILVGTHAIIEDTVQFKRLGMAVVDEQHRFGVAQRAKLWAK 415

Query: 418 ATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           +   PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    N+   +   ++
Sbjct: 416 SENPPHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIMTIHKYDNQTVSLYNGIR 475

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             + EG++ Y + P IEE ++S+ +++ + +  L E F    ++ +HGRM   +KES M 
Sbjct: 476 QQVREGRQVYIVFPLIEESEKSDLKNLEDGYKKLCEIFPEFRLSKVHGRMKSSEKESEMQ 535

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S C+L+
Sbjct: 536 KFVSGETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCLLV 595

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDS 654
               LS  +  R+ ++ +T DGF IAE DLK R  G++ G +QSG+     IA       
Sbjct: 596 TGYELSTETRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQ 655

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSI 681
           L+++AR +A+ I+  DP     +   +
Sbjct: 656 LVQLARNEAQKIIDDDPHCEKAQYSLL 682


>gi|206895105|ref|YP_002246645.1| ATP-dependent DNA helicase RecG [Coprothermobacter proteolyticus
           DSM 5265]
 gi|206737722|gb|ACI16800.1| ATP-dependent DNA helicase RecG [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 793

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 241/697 (34%), Positives = 374/697 (53%), Gaps = 25/697 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+S  +GVG K    L K+      + T   DL+ Y P  F+DR    K+ ++      T
Sbjct: 112 PVSKLKGVGSKVGASLEKL------DVTTVWDLIHYVPMRFVDRSKILKVKQLRTGIDAT 165

Query: 72  ITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           + G +         +  R   + L D TG + L+FF +  E L   F  G+ + VTGK++
Sbjct: 166 VLGTVVDVKLQKTYRGYRLLTVTLQDDTGRVDLVFFNQ--EFLARKFRRGQLVMVTGKVE 223

Query: 131 KLKNRIIMVH---PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLP 186
               R+ + +     +          P+I  VY    G + +  +K+I  AL +    +P
Sbjct: 224 SNHGRLQLTNLRSDSFEVLEPGKEILPMI-PVYRAGAGTTTNTIRKVIFNALDQYSHKVP 282

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E       Q+K F S  +A   +H P     FE    AR  +AY E+   Q+ L L +K 
Sbjct: 283 EIFPYW--QEKGFLSYPDAVEKLHRPENQAQFE---KARSEIAYREIFVLQVLLALRKKV 337

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
             +  GI   VE    +++ R +PF+ T +Q+  I +IL DM +   M R+LQGDVGSGK
Sbjct: 338 IGQAQGISFRVERDWIEELERKLPFTLTNAQKRVILEILNDMQKSKPMNRLLQGDVGSGK 397

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA+ AM  A + G Q+ +M P  +LA QHY    ++ +   + V ++ G++  + + K
Sbjct: 398 TVVAMFAMFVAAKNGKQSAVMVPTEVLAFQHYMVFSQWAEQFGLRVGLLVGSLSASEKSK 457

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--ATAPHVL 424
               +  GQ  I++GTHAL Q+   +  L LVI+DEQHRFGV QR  L     +  P VL
Sbjct: 458 VKRYLKSGQLDIVVGTHALIQEDTSFKDLGLVIIDEQHRFGVYQRAALISMDKSKQPDVL 517

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPRTLVLT  GD+D+S I E P  RKP+KT  +   R   V E +K  L EG++
Sbjct: 518 VMSATPIPRTLVLTYYGDLDVSVIDELPPNRKPVKTFWVSEKRRSSVYEAVKRELDEGRQ 577

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           AY + P IEE +     +    +  L   F     + ++HG+M+  +K++VMD F+ G+ 
Sbjct: 578 AYVVAPLIEESESIEAAAATSLYEELCSTFLKDYKVGLLHGKMNKEEKKNVMDEFRKGSL 637

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L++TTVIEVG+DV +A++++IE A+ FGL+QLHQLRGRV R    + C L+ +   ++
Sbjct: 638 QVLVSTTVIEVGVDVPNATVMVIEGADRFGLSQLHQLRGRVVRSSYQAYCYLIANAK-TQ 696

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL  +    DGF +AE+DL  R  GE++G +Q G     +A       +LE AR+D
Sbjct: 697 EAVERLESMVKYSDGFALAEKDLLLRGPGELMGERQHGFSGMRVADLIKDMKMLEPARQD 756

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           A+ ++++DP+L       +R  L L ++ +A   +  
Sbjct: 757 AERLVSEDPNLERPSSSFLRRYL-LKEFGDASFLLGV 792


>gi|293389090|ref|ZP_06633562.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis S613]
 gi|291081558|gb|EFE18521.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis S613]
          Length = 678

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 227/694 (32%), Positives = 373/694 (53%), Gaps = 30/694 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            DLL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIATIEDLLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  ++          I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      L  E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFA---PIYHVNKKVRQSTLVQLIRTAFEEYGSLVEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K       EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMPRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + I  + +  +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAIQYDVERLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL 
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLF 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASAL 648

Query: 667 --LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             + +     + +G + R+       +EA QF  
Sbjct: 649 WKVKEWWQYPAYQGLANRVK----PQDEAAQFFD 678


>gi|258648960|ref|ZP_05736429.1| ATP-dependent DNA helicase RecG [Prevotella tannerae ATCC 51259]
 gi|260850563|gb|EEX70432.1| ATP-dependent DNA helicase RecG [Prevotella tannerae ATCC 51259]
          Length = 702

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 241/698 (34%), Positives = 368/698 (52%), Gaps = 23/698 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG + +  LSK +     +     DLL+  P  +IDR    +I  + E  
Sbjct: 7   LSQAIKYLKGVGPRRAELLSKEL-----HIDSLGDLLYTFPFRYIDRSEVHEIQALQEGM 61

Query: 69  -IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V I G     S     +++    +  DGTG + +++F    + +K          + G
Sbjct: 62  PYVQIRGRFISFSEEGEGRKKRISAVFTDGTGYVDVVWF-AGLKYVKETLRYDETYLLLG 120

Query: 128 KIKKLKNRIIMVHPHYI-FHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALSR 181
             K    RI   HP          +    ++ VY         G +     K++  A + 
Sbjct: 121 TPKLFARRISFAHPELEKIAPDAPLQNLGLQPVYHTTERMKKMGFTSKSMSKLMQAAFAL 180

Query: 182 LP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +    LPE +    +QK     + +A    H P  +           RL ++EL   Q+ 
Sbjct: 181 IESTPLPETLPAWFVQKHQLMELTKALLTAHFPPSSAALPEA---LRRLKFEELFYLQLD 237

Query: 240 LL-LMRKQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +L  M+ +     G      G    +     +PF  T +Q+  I++I  D+    +M R+
Sbjct: 238 ILRYMKHRQLSVQGFCFPKVGNLFLRFFHERLPFELTGAQKRVIREIRNDVGSGRQMNRL 297

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VAL+A   A++ G QA IMAP  ILA+QH   I  +  +  + V ++TG
Sbjct: 298 LQGDVGSGKTMVALMACLLALDNGFQACIMAPTEILAEQHLATITAFLGDLPLRVALLTG 357

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-Q 416
            +    R++ L+ +A G   ++IGTH L + ++++  L L ++DEQHRFGV+QR +L  +
Sbjct: 358 IVKGKARQEILDGVADGSVQLLIGTHTLIEPTVRFLNLGLAVIDEQHRFGVKQRSQLWTK 417

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPIKTV    +   ++ + L+
Sbjct: 418 NIRPPHILVMTATPIPRTLAMTVYGDLDVSIIDELPPGRKPIKTVHYYQDNSSQLYDGLR 477

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             LS G++AY + P I+E  + + +++ + F SL E F+   I ++HG+M  I+KES M 
Sbjct: 478 YQLSLGRQAYVVYPLIKENAQMDLKALEQGFESLREVFSDMDIGVVHGQMRPIEKESEMA 537

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F  G  K+L++TTVIEVG++V +AS+++IENAE FGLAQLHQLRGRVGRG   S CIL+
Sbjct: 538 RFVRGETKILVSTTVIEVGVNVPNASVMVIENAERFGLAQLHQLRGRVGRGATQSYCILV 597

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDS 654
               LSK+S  R+ ++ +T DGF IAE DLK R  G++ G  QSG+P    IA      +
Sbjct: 598 TKRELSKDSRARIGIMVDTNDGFEIAEADLKLRGPGDLEGTAQSGLPFDLKIANIVRDGN 657

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           LL+ AR+ A+ I+  DP     +    R  L   +  +
Sbjct: 658 LLQTAREAAEAIIEADPLFEQSKNALFRQRLDQLRREK 695


>gi|328957308|ref|YP_004374694.1| ATP-dependent DNA helicase RecG [Carnobacterium sp. 17-4]
 gi|328673632|gb|AEB29678.1| ATP-dependent DNA helicase RecG [Carnobacterium sp. 17-4]
          Length = 682

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 234/684 (34%), Positives = 368/684 (53%), Gaps = 22/684 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
               ++  +S    VG+K    L ++            DLL ++P  + D      + EI
Sbjct: 1   MAKSIYDSVSVLPYVGEKRLEALHQL------GIHTISDLLSHYPIRYEDIQE-KDLLEI 53

Query: 65  SEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            ++  VT+ G +   +       K+      L      IT+ FF +    LK+    G +
Sbjct: 54  EDQEKVTLKGNVVSEAVVSRFGPKKNRLSFRLIIEHAVITVTFFNQ--AYLKSKIVTGEE 111

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           I V GK    +  +  +    I  +         E+VYS    +      ++I EA    
Sbjct: 112 IAVFGKWDAKRKSLTGMK---ILGSKSGSEQGDFESVYSANKHIKQSTILQLITEAFKIY 168

Query: 183 -PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              +PE I  +L  K    S  +A   +H P      E    AR  + ++E L  Q+ + 
Sbjct: 169 QEHIPEVIPAELRTKYRLISHHDAVYAMHFPASE---EQKKQARREVVFEEFLLYQMRMQ 225

Query: 242 LMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           ++RK+ K    G  +N      +  +  +PF  T +Q+  + +I  D+ Q   M R+LQG
Sbjct: 226 IVRKKQKAMGKGNILNYNVNDLRNFIETLPFELTTAQKRVVNEICSDLRQPIHMHRLLQG 285

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA IA+ AA   G Q+ +M P GILA+QH E + +     ++ + ++TG+  
Sbjct: 286 DVGSGKTIVAAIALYAATNVGVQSALMVPTGILAEQHMESLTELFDPLEVRIALLTGSTK 345

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR  LE++A+G+  ++IGTHAL Q  + + +L LVI DEQHRFGV QR  L  K   
Sbjct: 346 TKERRIILEQLANGELDVLIGTHALIQQDVYFSRLGLVITDEQHRFGVNQRKLLRDKGKD 405

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  I     ++ +E ++  L 
Sbjct: 406 ADVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIPIQTTWIKPKNFEKTLEFIESQLK 465

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFK 538
           +G +AY ICP IEE +  + ++  + +  L  ++     + ++HG+M   DKE++M++FK
Sbjct: 466 KGSQAYVICPLIEESESIDVKNATDIYEKLTAYYGDRFQVGLLHGKMKSADKENIMENFK 525

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               ++L++TTVIEVG++V +A+ +II +A+ FGL+QLHQLRGRVGRG++ S CIL+ +P
Sbjct: 526 EKKLQVLVSTTVIEVGVNVPNATTMIIYDADRFGLSQLHQLRGRVGRGDKESYCILVANP 585

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             ++N   R+ ++  T DGFL++E+DL+ R  G++ G KQSG+P F I         LE 
Sbjct: 586 K-TENGMERMKIMTETTDGFLLSEKDLELRGPGDLFGNKQSGIPDFKIGDIVGDFGALEA 644

Query: 659 ARKDAKHILTQDPDLTSVRGQSIR 682
           AR++A  ++ Q   LT+   Q IR
Sbjct: 645 ARQEAVQLINQKDFLTNELYQPIR 668


>gi|327441097|dbj|BAK17462.1| RecG-like helicase [Solibacillus silvestris StLB046]
          Length = 679

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 240/683 (35%), Positives = 374/683 (54%), Gaps = 23/683 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +  P+S  +G+GK+ +  L KI            DL++  P    D      ++E     
Sbjct: 2   IHEPVSHLKGIGKETAENLMKI------GIETIHDLIWTFPYRHEDFR-LKDLTETPHNE 54

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVT 126
            VTI   +    +     +   ++      G   I ++FF +    L+     G  ITVT
Sbjct: 55  RVTIEARVESEPTVLFLGKNKSRLQFTALAGRHLIKVVFFNQN--YLRQKISTGGIITVT 112

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVL 185
           GK  + +  I+     +    ++ V+F   E VYSL   +    F+K + +AL  +   L
Sbjct: 113 GKWDRGRQVIVGSSVTF-GPKTEQVDF---EPVYSLKGNIQQKRFRKYMRQALDTVKEEL 168

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PE +   L +     +I EA   +H P  A   +    AR R  Y+ELL  Q+ +  +RK
Sbjct: 169 PETLPNYLRESYQLVNIQEALEGVHFPLNA---DHAKQARRRFVYEELLQFQLRIQALRK 225

Query: 246 QFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
             K+   GI +  + +  +  +  +P+  T +Q+  + +I +DM    RM R+LQGDVGS
Sbjct: 226 ANKENEKGISVRFDLEKLKAFITTLPYELTGAQKRVVNEICKDMLLPQRMNRLLQGDVGS 285

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA I + AAV AG Q  +MAP  ILA+QH E +  +     + + +++G+     R
Sbjct: 286 GKTVVAAIGLYAAVTAGYQGALMAPTEILAEQHAENLHMWFDPIGVKIALLSGSTKTKAR 345

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R+ L ++A G+  I+IGTHAL Q  +++ KL  VI DEQHRFGV+QR  L +K   P VL
Sbjct: 346 RELLAQLAAGEIDILIGTHALIQPDVEFKKLGFVITDEQHRFGVEQRRVLREKGENPDVL 405

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            MTATPIPRTL +T+ G++D+S I E PAGRK I+T  +   +++ V+ R+   L  G++
Sbjct: 406 FMTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETHWLKKEQLNSVLMRMTQELEAGRQ 465

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTC 542
           AY I P IEE  + + ++ VE +  L  +F +   I ++HGR+   +K++VM +F +G  
Sbjct: 466 AYVIAPLIEESDKLDVQNAVEAYEQLKAYFGTRFEIGLMHGRLHSDEKDAVMRAFSDGKI 525

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L++TTV+EVG++V +A+ + I +AE FGLAQLHQLRGRVGRGE  S C+L+  P  + 
Sbjct: 526 HVLVSTTVVEVGVNVPNATFMTIYDAERFGLAQLHQLRGRVGRGEHQSYCVLIADPK-TD 584

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+  +  T DGF +AE+DL+ R  G+  G +QSG+P+F +A        LE AR+D
Sbjct: 585 EGKERMMSMTETNDGFRLAEKDLELRGSGDFFGKRQSGLPEFKLADLVHDYRALETARQD 644

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
           A+ +L  +        + +R  L
Sbjct: 645 AEKMLYDEAFWKDQEYEFLREDL 667


>gi|307571393|emb|CAR84572.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes L99]
          Length = 697

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 236/680 (34%), Positives = 381/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 23  PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 75

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 76  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKISVGETVTISGKW 133

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
            K + ++           +++     +E VY L   L     +K    A       + E 
Sbjct: 134 DKSRAQVTASKIKIGAVENEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 189

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P+  ++      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 190 IPSNLLEKYQLMDRLEAVRILHFPKNNEEL---KQARRRMVYEEFLLFQLKMQFFRKIER 246

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 247 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 306

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 307 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 366

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 367 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 426

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 427 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 486

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 487 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCL 546

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 547 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 605

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H
Sbjct: 606 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVH 665

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 666 MIFEEGMLENKNYEKLVALL 685


>gi|254852719|ref|ZP_05242067.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL R2-503]
 gi|300763876|ref|ZP_07073873.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL N1-017]
 gi|258606040|gb|EEW18648.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL R2-503]
 gi|300515612|gb|EFK42662.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL N1-017]
          Length = 682

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 238/680 (35%), Positives = 381/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKIRVGETVTISGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
            K + ++           S++     +E VY L   L     +K    A       + E 
Sbjct: 119 DKSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P+  ++      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPSNLLEKYQLMDRLEAVRILHFPKNNEEL---KQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F N     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNNKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H
Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 651 MIFEEDMLENKNYEKLVALL 670


>gi|108763623|ref|YP_631603.1| ATP-dependent DNA helicase RecG [Myxococcus xanthus DK 1622]
 gi|108467503|gb|ABF92688.1| ATP-dependent DNA helicase RecG [Myxococcus xanthus DK 1622]
          Length = 669

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 230/669 (34%), Positives = 360/669 (53%), Gaps = 13/669 (1%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEI 101
           D+LF  P  + DR     I+E+         G +        +  RR ++ ++ D +G I
Sbjct: 3   DILFMLPRCYEDRRQLRTIAELEPGERGVTVGIVKVADFVPGRQGRRMFRAVVGDRSGSI 62

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD----VNFPLIE 157
              +F      LK+ F  G++I ++G+++   +   M HP        +    V+F  I 
Sbjct: 63  AATYFNAG-PWLKSRFTVGKRIVLSGEVRATMSGREMPHPEIEPAEDIESTTSVHFNRIV 121

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
            VY          F+++      +    L + +  DL ++     + +A   IH P    
Sbjct: 122 PVYPGFERGEQRSFRELTSRVGEQYAHELDDPLPADLRRRLDLMGLPDALRFIHFPPGDA 181

Query: 217 DFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
           D E      SPA  RLA+DEL   Q+ + L R+  K E+GI  +V      K    +PF 
Sbjct: 182 DLEALDAHQSPAHRRLAFDELFFLQLGMALKRQGVKAEVGISFDVSEPRLAKARNALPFQ 241

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T +Q   ++++  DM++   M R++QGDVGSGKT VA+++   A++AG Q  +MAP  I
Sbjct: 242 LTGAQARVVEELCWDMARPEPMNRLVQGDVGSGKTAVAMVSALIALQAGYQVAVMAPTEI 301

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QH    +K  +     V +++       +R+  E +A G+ H+ +GTHAL Q  + +
Sbjct: 302 LAEQHERNFRKVMEPLGYRVGLVSAAGTAKAKRQVREAVARGEVHLAVGTHALLQADVSF 361

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            +L LV++DEQHRFGV QR  L  K   P VL+MTATPIPRTL +T  GD+D+S I + P
Sbjct: 362 DRLGLVVIDEQHRFGVLQRHTLMSKGPKPDVLVMTATPIPRTLAMTLYGDLDLSVIDQLP 421

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            GR PI+T +    +   V E +   L++G +AY + P +EE ++ +          L +
Sbjct: 422 PGRTPIQTRVFNDKQRALVYESVGAQLAKGHQAYVVYPLVEESEKLDLEDATRGVEKLRK 481

Query: 513 HFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            F  + + ++HGRM   +K+SVM+ F+     LL+ TTV+EVG+DV +AS++++E+AE F
Sbjct: 482 VFPDAKVGLLHGRMKAEEKDSVMEDFREKRLHLLVCTTVVEVGVDVPNASVMVVESAERF 541

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+QLHQLRGRVGRG   S C L+     S  S  RL+V++ + DGF+IAE+DL+ R  G
Sbjct: 542 GLSQLHQLRGRVGRGAAASFCHLVAGSARSWESAERLTVMEQSSDGFVIAEKDLEIRGPG 601

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           E LG +QSG+P+  +A       LL +A+ +A+ IL +DPD+ +   Q +   L   ++ 
Sbjct: 602 EFLGTRQSGLPELAVANLARDGDLLSMAQSEARRILEKDPDMKAKENQGLVKALE-ERWE 660

Query: 692 EAFQFIRAG 700
                 R G
Sbjct: 661 GRLALARVG 669


>gi|21911087|ref|NP_665355.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS315]
 gi|28895227|ref|NP_801577.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes SSI-1]
 gi|21905297|gb|AAM80158.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28810473|dbj|BAC63410.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes SSI-1]
          Length = 671

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 241/672 (35%), Positives = 375/672 (55%), Gaps = 30/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D      + ++ +  
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDF-KSKSVFDLVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 56  KAVITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQ--PYLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK    K+ I  +    +    +D     ++ VY +  G+S     K I  A      L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDD----MQPVYRVAQGISQSTLIKAIKSAFEINAHLE 166

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + + E   +PI       +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDVG
Sbjct: 224 AENRSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++      + + I+T  M  A 
Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELF--PDLSIAILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPDL 673
            +  I++ DP+ 
Sbjct: 641 VSAAIVS-DPNW 651


>gi|226224414|ref|YP_002758521.1| ATP-dependent DNA helicase recG [Listeria monocytogenes Clip81459]
 gi|225876876|emb|CAS05585.1| Putative ATP-dependent DNA helicase recG [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 682

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 238/680 (35%), Positives = 382/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKISVGETVTISGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
            K + ++           S++     +E VY L   L     +K    A +     + E 
Sbjct: 119 DKSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFNSYSQDIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P+  ++      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPSNLLEKYQLMDRLEAVRILHFPKNNEEL---KQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F N     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNNKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H
Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 651 MIFEEDMLENKNYEKLVALL 670


>gi|212550292|ref|YP_002308612.1| ATP-dependent DNA helicase RecG [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549425|dbj|BAG84090.1| ATP-dependent DNA helicase RecG [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 700

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 250/687 (36%), Positives = 378/687 (55%), Gaps = 27/687 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH---YRPKISEISEER-IVT 71
            +G+G +    L K I     N     D+L+Y P  + D+       KI EI+ E   V 
Sbjct: 11  LQGIGSQKVEVLEKEI-----NVVSCQDMLYYFPYRYKDQRKSYRVDKIREINIEMSYVQ 65

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I ++S      R     + +DGTG I L++F      +   +    +  V GK++ 
Sbjct: 66  LKGRILRYSRSLNYPR--LSGIFDDGTGTIELVWFN-SINWVPKYYKIDEEYYVYGKLRF 122

Query: 132 LKNR-IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-----VDLFKKIIVEALSRL-PV 184
            + + I +V+P              ++ +Y     +       +   +I+ + L      
Sbjct: 123 FRGKYISIVNPQIKTECKFCEGVTRMQGIYRTTAKMKKASLDSNTISQIMRQILEYTKEP 182

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM- 243
           L E +   ++ K    S+ EA + IH P+     E     + RL ++EL   Q+A LL  
Sbjct: 183 LSETLPTGIIDKCKLISLDEAIHNIHFPKSDNLLEQA---QYRLKFEELFYVQLANLLNP 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            ++ K+  G   +  G+    +  N+PF  T +QE    +I QDM+   +M R++QGDVG
Sbjct: 240 NRRKKQLDGFCFSKVGENFHFLKNNLPFELTHAQERVFNEIRQDMNTGKQMNRLVQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VAL+++  A++ G Q  IM P  ILA QHYE I    + + + V ++TG+     
Sbjct: 300 SGKTVVALLSILTAIDNGFQGAIMVPTEILATQHYETISHLLEGSTVKVALLTGSTKNKV 359

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAPH 422
           R + L ++  G   I+IGTHAL +DS+++  L LV+VDEQHRFGV QR KL  + +T PH
Sbjct: 360 REEMLPKVKSGDIQILIGTHALIEDSVEFSNLGLVVVDEQHRFGVTQRAKLWDKNSTPPH 419

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRT+ +T  GD++IS I E P GRKPI+T  I   + +++ E ++  L  G
Sbjct: 420 VLVMTATPIPRTMAMTVYGDLNISTIDELPPGRKPIRTYHIYDEKRNKMYEYVREQLKIG 479

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           K+ Y + P IEE ++ +  ++ E F ++ + F   SI+ +HG+M   +K   M  F +G 
Sbjct: 480 KQVYIVYPLIEENEKIDLINLQEGFRAVSKVFPEYSISKVHGQMKPEEKNQEMQKFVSGE 539

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            +++++TTVIEVGIDV +AS+IIIENAE FGL+QLHQLRGRVGRG E + CIL+ +  LS
Sbjct: 540 TQVMVSTTVIEVGIDVKNASVIIIENAERFGLSQLHQLRGRVGRGTEQAVCILITNYELS 599

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM--PKFLIAQPELHDSLLEIA 659
           K +  R++V+  T +GF +AEEDLK R  G I+G KQSG    K  IA      ++L  A
Sbjct: 600 KEAQKRINVMTKTNNGFEVAEEDLKLRGPGSIIGTKQSGFAPKKLRIANVSKDVNILIRA 659

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLY 686
           R     IL  DP L   R   ++  L+
Sbjct: 660 RNFVYEILNADPALKDPRCNLLKQQLH 686


>gi|327183827|gb|AEA32274.1| ATP-dependent DNA helicase RecG [Lactobacillus amylovorus GRL 1118]
          Length = 678

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 218/683 (31%), Positives = 365/683 (53%), Gaps = 22/683 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +  L      G+       DLLFY P  + D      + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTAADL------GSLGIYSIYDLLFYFPFRY-DELQTLPLDQIMD 56

Query: 67  ERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            + V + G ++          K+      +      + + FF +    LK+    G+++ 
Sbjct: 57  GQKVMLKGIVATEPFVSGFGYKKSRLSFKIRIDHDIVMVNFFNQ--PWLKSKIEIGQEVA 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           + GK    +  +      + F  +++ N   +  +Y +   +       +I  A+   L 
Sbjct: 115 IYGKYNVARQSLSA----FKFVAAKE-NDSGMAPIYPVNRHVKQKKLINLINLAIDSFLD 169

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + + K++++K       E    +H+P+   D E     +    + E    ++ L L+
Sbjct: 170 QVQDIVPKEIMEKYRLLHDQEIIQKMHHPKNGHDAELA---KRSAIFREFFIFELQLALL 226

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
                K+ G P   + K    + +++PF  +  Q+  + +I  DM    +M R+LQGDVG
Sbjct: 227 ANHDGKQQGYPKKYDLKEIANLTKSLPFELSDDQKKVVNEIFADMHSDGQMRRLLQGDVG 286

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   + V ++TGN     
Sbjct: 287 SGKTIVAVYAIFAAISAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKTLE 346

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+    +  G  +++IGTHAL Q ++ + KL LVI+DEQHRFGV QR  L  K   P +
Sbjct: 347 RREIYCELTDGTINVVIGTHALIQKNVIFKKLGLVIIDEQHRFGVGQRQALINKGDNPDI 406

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +     +++ +V + +   L +G 
Sbjct: 407 LAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISAWKTSSQMKDVYKLMYEQLDQGF 466

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I E +  + ++  E    L   F   ++ ++HG+M    K+ +M +F +G  
Sbjct: 467 QIYAVTPLITESETLDLKNAEELHEKLSHDFPDQNVVLLHGQMPGAKKDEIMSAFASGEI 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S CI +  P  + 
Sbjct: 527 NILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCIFIADPK-TD 585

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +   R+ ++  T +GF +AEEDLK R EG++ G  QSG+P+F +     + + L +A+K 
Sbjct: 586 SGKARMKIIAATNNGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVAQKV 645

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
           A+ ++  DP+LTS    S++ +L
Sbjct: 646 ARELVKADPELTSPEHNSLKQVL 668


>gi|21674393|ref|NP_662458.1| ATP-dependent DNA helicase RecG [Chlorobium tepidum TLS]
 gi|21647574|gb|AAM72800.1| ATP-dependent DNA helicase RecG [Chlorobium tepidum TLS]
          Length = 704

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 240/715 (33%), Positives = 370/715 (51%), Gaps = 34/715 (4%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           P F PL   +GVG K ++ L++      A      DL    P  ++DR    KI  + + 
Sbjct: 2   PPFLPLQVIKGVGPKRAVILAE------AGIRSIADLYDCFPRRYLDRTTIKKIGALRDG 55

Query: 68  RIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             VT+ G ++        +    +K  + DG+G + L +F R           G  +   
Sbjct: 56  ETVTVVGSVTGTRFEGGGRGGSRFKAQITDGSGVLELTWF-RGVHYFSKTIRSGELVAAH 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVN-----------FPLIEAVYSLPT-----GLSVDL 170
           G++        M HP +      D +              I  +Y         GL+   
Sbjct: 115 GRVTFFGRTPGMQHPDFDKLGGDDESGDGQRDDELYKTGAIIPIYPTTEAMKQAGLNSAA 174

Query: 171 FKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
            ++I+  A    P+ + E++  +++   +   I EA+  +H P  A+  E     R R+ 
Sbjct: 175 LRRIVHRAFREHPLRITEYLSPEIIAANNLMPIGEAYRQLHFPDSAEQLERA---RYRMK 231

Query: 230 YDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
           + EL   Q+   L R ++ +    +     G+    +   +PF+ T +Q+ A+++I  D+
Sbjct: 232 WSELFFAQLFFALRRTEERRHLTSVRFERSGEKTASLHERLPFTMTSAQKQAVREIYHDL 291

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
               +M R+LQGDVGSGKTLVA  AM  AV+ G QA  MAP  ILA QHY  +K   +  
Sbjct: 292 KSGRQMNRLLQGDVGSGKTLVAQFAMTLAVDNGLQAAFMAPTEILAFQHYAGLKNSLEPL 351

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            I V ++TG   +  R + L R+  G+  I +GTHA+ +  +Q+ +L LVI+DEQHRFGV
Sbjct: 352 GIRVALLTGRQKKKEREEKLARLERGEIDIAVGTHAIIEAGVQFRRLGLVIIDEQHRFGV 411

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            QR  L +KA  PHVLLMTATPIPRTL +   GD+D+S I E PAGRKPI+T +      
Sbjct: 412 LQRKALQEKAENPHVLLMTATPIPRTLTMGIYGDLDVSIIAEMPAGRKPIQTRLCCEAEK 471

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMS 526
            E+   L+  ++EG++AY + P +EE ++ + ++  E +  L         + +IHG++ 
Sbjct: 472 PELYRLLRKQIAEGRQAYIVYPLVEESEKIDLKAATESYEQLRREVFPELRLGLIHGQLP 531

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +KE+VM  F++G   +L+ TTVIEVG+DV +A+I++IE+AE FG++QLHQLRGRVGRG
Sbjct: 532 AAEKEAVMAEFRSGRLDILVGTTVIEVGVDVPNATIMVIEHAERFGISQLHQLRGRVGRG 591

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFL 645
           E  SSC L+Y   L+ ++  RL  +  T DGF ++E DL+ R  G +LG +QSG      
Sbjct: 592 EHASSCFLVYT-KLTGDAKDRLQAMAATGDGFRLSEIDLQIRGAGNMLGREQSGAASGLR 650

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           IA       ++  AR  A  ++ +D  LT      IR   Y+  + +       G
Sbjct: 651 IADLLTDGDIMRAARAAAFELIRRDETLTHPENALIRDY-YMTHFRKRISLADVG 704


>gi|306826760|ref|ZP_07460062.1| DNA helicase RecG [Streptococcus pyogenes ATCC 10782]
 gi|304431049|gb|EFM34056.1| DNA helicase RecG [Streptococcus pyogenes ATCC 10782]
          Length = 671

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 242/672 (36%), Positives = 375/672 (55%), Gaps = 30/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D      + ++ +  
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDF-KSKSVFDLVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 56  KAVITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQ--PYLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK    K+ I  +    +    +D     ++ VY +  G+S     K I  A      L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDD----MQPVYRVAQGISQSTLIKAIKSAFEIDAHLE 166

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E   +PI       +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDVG
Sbjct: 224 AENKSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++      + + I+T  M  A 
Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELF--PDLSIAILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPDL 673
            +  I++ DP+ 
Sbjct: 641 VSAAIVS-DPNW 651


>gi|217964036|ref|YP_002349714.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes HCC23]
 gi|217333306|gb|ACK39100.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes HCC23]
          Length = 682

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 236/680 (34%), Positives = 381/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKISVGETVTISGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
            K + ++           +++     +E VY L   L     +K    A       + E 
Sbjct: 119 DKSRAQVTASKIKIGAVENEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P+  ++      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPSNLLEKYQLMDRLEAVRILHFPKNNEEL---KQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H
Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 651 MIFEEGMLENKNYEKLVALL 670


>gi|37520847|ref|NP_924224.1| ATP-dependent DNA helicase RecG [Gloeobacter violaceus PCC 7421]
 gi|35211842|dbj|BAC89219.1| DNA recombinase [Gloeobacter violaceus PCC 7421]
          Length = 811

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 237/703 (33%), Positives = 392/703 (55%), Gaps = 26/703 (3%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P     L  P++   G+G K +  L K+        T    +L Y+P  ++D   R  I 
Sbjct: 111 PPEAAILDQPMTKLGGIGPKLAAQLEKL------GLTTIGQVLRYYPRDYLDYSNRTTIK 164

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEM------- 112
                 +VT+ G + +   F   +     I    L DGTG++ L  F+  T         
Sbjct: 165 VCQPGEMVTLLGQVRRCRCFTSPRNHKLSIFTLTLGDGTGQMQLSQFFAGTRFTHRGWQE 224

Query: 113 -LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV--NFPLIEAVYSLPTGLSVD 169
                +  G  +  +G +K+    + +  P     +  +   N   I  VY+L  G+   
Sbjct: 225 AQMKQYPRGATVAASGLVKRSTTGLTLQEPQLEVLDEGEDLQNLTKIVPVYALAEGVGAG 284

Query: 170 LFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
           + ++ +  AL       + +   +        +  A   +H P  A   E    AR RL 
Sbjct: 285 VVRRAVKAALPFANAFTDPLPAAVRTSLGLLDLPGAIRAVHYPESA---EHKLQARRRLV 341

Query: 230 YDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
           +DE    Q+ LL  R +Q ++  GI     G++ ++  + +PF+ T +Q+  ++++L D+
Sbjct: 342 FDEFFFLQLGLLQRRHRQKRQSAGIAFRTRGELIEQFYKLLPFAFTGAQKRVVEEVLADL 401

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
                M R++QGDVGSGKT+VA++AM  A+++G Q  +MAP  +LA+QHY+ + ++    
Sbjct: 402 GSPEPMNRLIQGDVGSGKTVVAVVAMLTALQSGYQTALMAPTEVLAEQHYQKLVQWLSQL 461

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            + VE++TG++  A RR  L ++A G+ ++++GTHAL QD +Q+  L LV++DEQHRFGV
Sbjct: 462 HLPVELVTGSVRAARRRDVLRQLASGELNVVVGTHALIQDGVQFANLGLVVIDEQHRFGV 521

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            QR +L  K   P +L MTATPIPRTL LT  GD+D+S+I E P GRKP++T ++  +  
Sbjct: 522 GQRARLQNKGRNPDLLTMTATPIPRTLALTLHGDLDVSQIDELPPGRKPVRTTVVTPSER 581

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMS 526
            +V E ++  + EG++AY + P IEE ++ + RS +E    L E   +   + ++HGR+ 
Sbjct: 582 TQVNELIRRQILEGRQAYIVLPLIEESEKVDLRSAIEEHERLKEKIFAEFRLGLLHGRLK 641

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +KE+V+ +F+     LL++TTV+EVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG
Sbjct: 642 SEEKEAVIGAFRRHELDLLVSTTVVEVGVDVPNATVMLIEHAERFGLAQLHQLRGRVGRG 701

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+L+     ++++  RL VL+ + DGFLIAE DL+ R  GE++G +QSG+P  ++
Sbjct: 702 ANQSFCLLMSATK-TESALQRLRVLEQSNDGFLIAEMDLRLRGPGEVMGTRQSGLPDMVL 760

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           +        LE+AR++A+ ++ +DP+LT+       +   L +
Sbjct: 761 SSLVEDQDSLELARREAQSLIERDPELTAHPLLRAELAGRLDR 803


>gi|255038637|ref|YP_003089258.1| ATP-dependent DNA helicase RecG [Dyadobacter fermentans DSM 18053]
 gi|254951393|gb|ACT96093.1| ATP-dependent DNA helicase RecG [Dyadobacter fermentans DSM 18053]
          Length = 706

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 239/695 (34%), Positives = 369/695 (53%), Gaps = 20/695 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
               +   +GVG + +  L++ ++        F DL+ ++P    DR    K+S+++E+ 
Sbjct: 14  FDTKIEFLKGVGPQKAALLNQELS-----IFTFGDLIQHYPFRHEDRSVFHKLSDLNEQM 68

Query: 69  IV-TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
               + G + + S      ++       DGTG + L++F +     +     G +  V G
Sbjct: 69  TAAQVKGRLREFSVIGEGSKKRLVGTFQDGTGFLDLVWF-QSISWYEKWLRRGGEYIVYG 127

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-----VDLFKKIIVEALSRL 182
                  +  + HP       ++ +    + +Y L   L           K++   L   
Sbjct: 128 TPVLYGGKWSITHPEIEVLTPENASAGYWQPIYPLTEKLRKKFLDSKALSKMMRNLLEIA 187

Query: 183 PV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              + E +   L++K    S A+A    H P+   D      A+ RL ++EL   Q  L+
Sbjct: 188 HTHIRETLPAPLVEKYRLVSKAQALWHFHLPQ---DNRTLHQAQRRLKFEELFYNQFRLI 244

Query: 242 LMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +   K    G+  +    + +   +++PF  T +Q   + +I +D+    +M R+LQG
Sbjct: 245 KNKLLHKTEYPGLIFDKTLLVKEFYEQHLPFKLTGAQIRVLHEIHEDLKTGKQMNRLLQG 304

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA I M  A++   QA +MAP  IL  QHY+ +KK+     + +  +TG+  
Sbjct: 305 DVGSGKTIVAFITMLFALDNDAQACLMAPTEILTDQHYQGLKKFADLLGVNIAKLTGSTK 364

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR--LKLTQKA 418
           +  R      + +G  HII+GTHAL +D++Q+  L L I+DEQHRFGV QR  L    K 
Sbjct: 365 KKEREVIHRELLNGTLHIIVGTHALIEDAVQFKNLGLCIIDEQHRFGVAQRAKLWAKNKR 424

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH+L+MTATPIPRTL +T  GD+DIS I E PAGRKPIKTV        +V   LK  
Sbjct: 425 INPHMLVMTATPIPRTLAMTLYGDLDISAINELPAGRKPIKTVHRFDKNRLQVFGFLKEE 484

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++G++ Y + P IEE ++ + + +++ + S+   F    ++I+HG+M   DK+  M  F
Sbjct: 485 IAKGRQVYMVYPLIEESEKMDLKDLMDGYESVARAFPGVPLSIVHGKMRSQDKDFEMGRF 544

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G  K+++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG E S CIL+  
Sbjct: 545 VRGETKIMVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGAEQSYCILMTD 604

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             LSK++  R+  +  T DGF IAE DL+ R  G+I G +QSG+   L+A       +L+
Sbjct: 605 YKLSKDTKLRIETMCRTNDGFEIAEVDLQLRGPGDISGTQQSGLVDLLVANLAQDGEILK 664

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            AR  A+ ILT DPDL     Q IR  L   +  E
Sbjct: 665 AARASAEEILTTDPDLLQPVHQPIRSHLENLRKEE 699


>gi|154504978|ref|ZP_02041716.1| hypothetical protein RUMGNA_02488 [Ruminococcus gnavus ATCC 29149]
 gi|153794861|gb|EDN77281.1| hypothetical protein RUMGNA_02488 [Ruminococcus gnavus ATCC 29149]
          Length = 686

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 241/685 (35%), Positives = 380/685 (55%), Gaps = 18/685 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S  +GVG+K      K      A      DLL Y+P ++        I EI E + VT+
Sbjct: 7   ISVLKGVGEKTEQLFIK------AGVHTIGDLLAYYPRTYDIYEDPISIGEIQEGKTVTV 60

Query: 73  TGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G I  +    Q +K +   + L D TG + +++F  +   L+N    G  IT+ G+I +
Sbjct: 61  IGAIFGRIQVSQNKKMQITTLYLKDMTGTLKVIWF--RMPFLRNTLGRGGVITLRGRIVR 118

Query: 132 LKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
            K+ ++M HP   + + S +     ++ VY+L  GL+ +  KK + +AL ++  + E++ 
Sbjct: 119 KKDALVMEHPEIFYPSASYEEKRNTMQPVYALTAGLTNNAVKKAVAQALEQVEGIREFLP 178

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           ++L+ +        A   IH P   ++F      R+R  ++E L   ++L +++++  + 
Sbjct: 179 EELICRYHLLDRRTAMEGIHFPETKEEFYEA---RKRFVFEEFLIFVLSLRMIKEREDRA 235

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
                  +     + L  +P+  T +Q+   ++IL+D+S ++ M R++QGDVGSGKT+VA
Sbjct: 236 KNHYGFCDQPKVDEFLYALPYELTGAQKKVWQEILRDISGESVMSRLVQGDVGSGKTIVA 295

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRKAL 368
           L+A+      G Q+ +MAP  +LA+QHYE I    +   I    E++TG+M    +R+A 
Sbjct: 296 LLALMYTGLNGYQSAMMAPTEVLARQHYENISGMLEAYGIPLKTELLTGSMTAKAKREAY 355

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            RI  G+A I+IGTHAL Q+ +QY  L LV+ DEQHRFGV+QR  L  K   PH+L+M+A
Sbjct: 356 ARIEAGEADIVIGTHALIQEKVQYQNLALVVTDEQHRFGVKQRETLAGKGVLPHILVMSA 415

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +   GD+DIS I E P  R PIK  ++     +     +K  +  G++ Y I
Sbjct: 416 TPIPRTLAIILYGDLDISVIDELPKNRLPIKNCVVDTGYRNTAYTFMKKQVQSGRQCYVI 475

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP +EE +     +V +    L +    S  +  +HG+M    K+ +M++F     ++L+
Sbjct: 476 CPMVEESEALEAENVTDYSQMLQDIMGESVKVGCLHGKMKQAQKDEIMEAFGKNEIQILV 535

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVGIDV +A++++IENAE FGLAQLHQLRGRVGRG   S CI +  P  SK +  
Sbjct: 536 STTVIEVGIDVPNATVMMIENAERFGLAQLHQLRGRVGRGGHQSYCIFI-SPSKSKETKE 594

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL +L  + DGF IA EDL+ R  G++ GI+QSG+  F +        +L+ A + A  +
Sbjct: 595 RLGILNQSNDGFFIAGEDLRLRGPGDLFGIRQSGLMDFKLGDVFQDSLILKQAAEAAGEL 654

Query: 667 LTQDPDLTSVRGQSIRILLYLYQYN 691
           L  DP L S R + +   L  Y  +
Sbjct: 655 LRTDPGLKSERNRRLADRLKHYLSD 679


>gi|226373858|gb|ACO52152.1| RecG [Wolbachia endosymbiont of Armadillidium vulgare]
          Length = 676

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 275/696 (39%), Positives = 395/696 (56%), Gaps = 29/696 (4%)

Query: 3   PSFLNPLFAPLSTFRGVGKK-YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           P  L  L + L        K +S  L K+         R +DLLFY P S++DR     +
Sbjct: 4   PDILIFLSSKLGNI----PKFHSAILPKL-----CGGDRVMDLLFYRPLSYVDRSK--SL 52

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            +       T    + +H     + R PYK+++   +  + ++FF    + L  +F  G 
Sbjct: 53  LDAQIGEFTTFMAKVYEHQPPTFRGR-PYKVVVESESQYVFIVFFNYSIKYLHKLFPIGA 111

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            + ++GK++K      + HP Y+  N SQ      IE +Y L  G++    + II   L 
Sbjct: 112 NVIISGKLEKFAEHWQITHPDYVSLNISQFEEIACIEPIYQLCRGITNKSIRNIINSNLE 171

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            LP LPEWI+  L+++K + +  E+   +H P    + E     RERLAYDEL A Q+AL
Sbjct: 172 GLPDLPEWIDGTLIKQKKWLNWKESIIRLHRPSSLAEAE---VCRERLAYDELFAYQLAL 228

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
              R+   K+ G    +  K  +++L  +PF  T  Q  AI +I +    K RM+ +LQG
Sbjct: 229 KFARENHVKKEGREFVILSKYKEQVLNGLPFQLTNDQIRAIDEIAERQKSKYRMVSLLQG 288

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL AM   VE   QA +MAP  ILA+QHY +I++    T I V ++TG   
Sbjct: 289 DVGSGKTVVALFAMLNVVENNMQAALMAPTTILAEQHYNWIEEALSCTDIKVALLTGKTS 348

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           +  RR  +  +A G  +I+IGTH LFQ ++ +  L L ++DEQ RFGV QR +L  K   
Sbjct: 349 RKERRTIMNELASGVLNIVIGTHTLFQANVTFKNLGLAVIDEQQRFGVMQRNRLVGKGEN 408

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P +L +TATPIPRTL     GD++ S + EKP  R PIKTV + I ++ ++I++LK  ++
Sbjct: 409 PDILFVTATPIPRTLQQAMYGDVECSILKEKPKSRLPIKTVTMNIKKVPDIIKKLKDAIN 468

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G+KAYWICP IEE +E N  +   RF  L + F   I+IIHG+++   K+ VM SFK  
Sbjct: 469 RGEKAYWICPYIEENEELNIAAAEMRFQELQKTFFDKISIIHGKLTQEQKDQVMFSFKRN 528

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              LL++TTVIEVGIDV DA+I+IIENAE FGL+QLHQLRGRVGRG + S C+LLY   L
Sbjct: 529 EFSLLVSTTVIEVGIDVPDATIMIIENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYD-NL 587

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           SK+S ++L ++  ++DGF IAE+D+  R  G+ILGIKQSG  +F  A       LL +A 
Sbjct: 588 SKSSSSKLKIMCESQDGFYIAEKDMMLRGSGDILGIKQSGYMEFKFADLYKDRELLNLAY 647

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
            +AK ++               +LL +++Y     F
Sbjct: 648 NNAKGVMAD-----------FELLLDIFEYRSRLHF 672


>gi|315282812|ref|ZP_07871135.1| ATP-dependent DNA helicase RecG [Listeria marthii FSL S4-120]
 gi|313613541|gb|EFR87362.1| ATP-dependent DNA helicase RecG [Listeria marthii FSL S4-120]
          Length = 682

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 236/680 (34%), Positives = 380/680 (55%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKISVGETVTISGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
            K + ++           +++     +E VY L   L     +K    A       + E 
Sbjct: 119 DKSRAQVTASKIKIGAVENEEE----LEGVYRLKGTLRNKTMQKYTRLAFDAYSSKIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P+  ++      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPTNLLEKYQLMDRLEAVRILHFPKNNEEL---KQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIESLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIEKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ +  + ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 472 ICPLIEESEKLDVENAIDVFNILQNKWGTKYTPGLMHGKLLPADKEQIMRDFNDKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H
Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 651 MIFEENMLENQTYEKLVALL 670


>gi|254670282|emb|CBA05583.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha153]
          Length = 680

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 241/666 (36%), Positives = 364/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTFPAWQRLKFDELLAQQLSMRLARQKRIGGTAAALRGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q +   +PF+ T +QE A+ +I  DM+Q + M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALHHALPFALTDAQEKAVSEICHDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGTVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D +++  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVESFVLNICRKGQQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGELNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|332522488|ref|ZP_08398740.1| ATP-dependent DNA helicase RecG [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313752|gb|EGJ26737.1| ATP-dependent DNA helicase RecG [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 671

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 238/684 (34%), Positives = 380/684 (55%), Gaps = 29/684 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PLS  +G G K +    K+      +     +LL Y+P  + D      + ++ +  
Sbjct: 3   LHSPLSELKGFGPKSAEKFQKL------DIFTIEELLLYYPFRYEDF-KSKSVFDLQDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              + G +   ++ Q    KR      + +    I + FF +    L +     +++ + 
Sbjct: 56  KAVLKGKVVTPATVQYYGFKRNRLSFKIKEDDLVIAINFFNQ--PYLADKVELDKEVAIF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPV 184
           GK  + K  +  +   ++     D     ++ VY +  G+S     K I  A     L  
Sbjct: 114 GKWDQKKTSLTGMK--FLMSLEDD-----LQPVYHVAQGVSQTALIKAIKSAFDTNLLSE 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E I + L+QK       EA   +H P    D      A  R+ ++EL   Q+ L +++
Sbjct: 167 IEENIPELLVQKYRLMGRQEAIRAMHFP---ADLPEYRQALRRIKFEELFYFQMQLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
              K     + I  + +  ++++ ++PFS T +Q  ++++IL+DM+    M R+LQGDVG
Sbjct: 224 HANKSATSGLAIAYDQRALEQVIASLPFSLTGAQLKSLEEILKDMASGQHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A +AM AA  AG Q+ +M P  ILA+QHY+ +       ++ + I+   M  A 
Sbjct: 284 SGKTVIASLAMYAAYTAGYQSALMVPTEILAEQHYQSLTSLF--PELSIAILKSGMKAAA 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R AL  IA G   +I+GTHAL QD++QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRSALTAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I + PAGRKPI T  +   ++D+V+  ++  +++G 
Sbjct: 402 LMMTATPIPRTLAITAYGEMDVSIIDQLPAGRKPIVTRWVKHQQLDDVLTWMRQEIAKGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + IA++HG+M + DK+++M +FKN  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALEQELKNYFQGDARIALMHGKMKNEDKDAIMQAFKNQE 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             LL++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 IDLLVSTTVIEVGVNVPNATIMLIMDADRFGLSQLHQLRGRVGRGHKQSYALLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T DGF++AE DLK R  GEI G +QSG+P+F IA       +LE AR+
Sbjct: 581 ETGKERMRIMTETNDGFILAEADLKMRGSGEIFGTRQSGIPEFKIADLLEDYPILEEARR 640

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
            A  I +Q    T  R Q I   L
Sbjct: 641 VASEIASQPNWQTDQRWQKIVKNL 664


>gi|157692267|ref|YP_001486729.1| ATP-dependent DNA helicase RecG [Bacillus pumilus SAFR-032]
 gi|157681025|gb|ABV62169.1| DNA helicase RecG [Bacillus pumilus SAFR-032]
          Length = 682

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 231/681 (33%), Positives = 371/681 (54%), Gaps = 19/681 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +S  +G+G++    L+++            DLL Y P  + D      + E+  + 
Sbjct: 5   LQDNVSVLKGIGEETEKTLNEL------GIHTVADLLGYFPYRYDDY-ELRNLEEVKHDE 57

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            VT+ G +          ++  ++      G   +         LK     G  ++VTGK
Sbjct: 58  RVTVEGKVHSEPVLTYYGKKRSRLTFRLLVGRFLITAICFNRPYLKRSLVLGDTVSVTGK 117

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLPE 187
             K +  I++      F          IE+VYS+   ++V + ++ + +ALS  +    +
Sbjct: 118 WDKNRQSIMVQ----EFKKGTHEQDGSIESVYSVKENVTVKMMRRFVKQALSLYVDKAED 173

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            + K L+      S  EA   IH P           AR R  Y+E L  Q+ +  +RK+ 
Sbjct: 174 QLPKQLVSTYKLMSYQEALKTIHLPETRDSL---KQARRRFVYEEFLIFQLKMQAIRKKE 230

Query: 248 KKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           +++   I      +   + + ++PF  TK+Q   + +I+ DM+   RM R+LQGDVGSGK
Sbjct: 231 REKTSGIQHPFSKEAVFEFVHSLPFPLTKAQSRVLDEIMSDMASPYRMNRLLQGDVGSGK 290

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T VA IA+ AA  +G Q  +M P  ILA+QH + + +  +   + + ++T ++    RR+
Sbjct: 291 TAVAAIALYAAHLSGYQGALMVPTEILAEQHADSLYQLFEKWGLNIALLTSSVKGKRRRE 350

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LER+  G+  I++GTHAL QD +++ +L LVI DEQHRFGV+QR KL  K   P VL M
Sbjct: 351 LLERLKEGEIDILVGTHALIQDEVEFQQLGLVITDEQHRFGVEQRKKLRSKGQDPDVLFM 410

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL +T  G++D+S I E PAGRK I+T  +  + ++ ++  +   L +G++AY
Sbjct: 411 TATPIPRTLAITVFGEMDVSVIDELPAGRKQIETYWVKHDMLERILAFVDKELKKGRQAY 470

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP IEE  + + ++ ++  + L E +    SI ++HG+++  +K+ VM  F     ++
Sbjct: 471 IICPLIEESDKLDVQNAIDVHSMLTEAYRGKWSIGLMHGKLASDEKDQVMRDFTANEVQI 530

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVG++V +A+I++I +A+ FGL+QLHQLRGRVGRGE  S CIL+  P  S+  
Sbjct: 531 LVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGEHQSFCILMADPK-SETG 589

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ ++  T DGF ++E+DL+ R  G+  G KQSGMP+F +A        LE ARKDA 
Sbjct: 590 KERMRIMSETTDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRALETARKDAA 649

Query: 665 HILTQDPDLTSVRGQSIRILL 685
            ++  D   T    + +R  L
Sbjct: 650 ELVQSDAFWTDPEYKELRQTL 670


>gi|256004524|ref|ZP_05429503.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum DSM 2360]
 gi|255991529|gb|EEU01632.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum DSM 2360]
          Length = 689

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 228/663 (34%), Positives = 348/663 (52%), Gaps = 19/663 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M       L   +   +GVG   +    K+            DL+ + P  + DR    K
Sbjct: 1   MNGDMKEILKKSIKNVKGVGDARAKLFHKL------GIFSIEDLITHFPYDYEDRSNIKK 54

Query: 61  ISEISEERIVTITGYISQHSSFQ--LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
           I +++E    T  G I    + +   Q    Y+  + D TG I   ++ +    +K V  
Sbjct: 55  ICQLTEGESCTFEGIIMSKVTERKIRQGLTLYQAYIKDDTGTIIATWYNQ--PYIKKVLT 112

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFH-NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
            G      GKI +    + + +P Y      +  N   I  VY     L+ +  + ++  
Sbjct: 113 VGESYIFYGKIVRGYKTLEVQNPVYEKACKEEHKNTMKIVPVYHATANLTQNTIRTVMQN 172

Query: 178 ALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL  +   L + +   + +K     I  AF+ IH PR   D      AR RL ++EL   
Sbjct: 173 ALELVDGNLEDVLPLWVRKKYCLCDINYAFSNIHFPRNDGDI---KNARYRLVFEELFLL 229

Query: 237 QIALLLMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ LL ++         I      K     + +I F+ T +Q+   ++I +DM     M 
Sbjct: 230 QLGLLSVKTVLSDGKEGIAFAPNRKEMVDFINSIGFTLTNAQKRVWEEIEKDMESNRVMN 289

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA +A+A AV++G Q  +M P  ILA+QHYE +K       I V ++
Sbjct: 290 RLVQGDVGSGKTIVAALALAKAVKSGYQGAMMVPTEILAKQHYESLKDIMGKHGINVALL 349

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
            G+  +  R + L +I  G+ +I+IGTHAL ++ +++ KL LVI DEQHRFGV+QR  L+
Sbjct: 350 VGSQTKKQRSEILSKIESGEVNIVIGTHALIEEKVKFSKLGLVITDEQHRFGVRQRAMLS 409

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K   P +L+MTATPIPRTL L   GD+DIS I E P GRKP+KT  +  +    +   +
Sbjct: 410 NKGINPDILVMTATPIPRTLALILYGDLDISIIDELPPGRKPVKTYAVDNSMRQRINNFI 469

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH--FTSSIAIIHGRMSDIDKESV 533
           K  + EG++AY ICP ++E  E   +S ++    + +       + ++HG+M   +KE V
Sbjct: 470 KKQILEGRQAYIICPLVDESDEIEAKSALKTAEKIAKEDFKDFRVGLLHGKMPAGEKEEV 529

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F  G   +L++TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRG   S CI
Sbjct: 530 MQKFLKGEIDILVSTTVVEVGVNVPNATLMVVENAERFGLAQLHQLRGRVGRGPHQSYCI 589

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L Y+   S+ +  R+ V++ T DGF+I+E+DL  R  GE  G +Q G+P   IA      
Sbjct: 590 L-YNESKSQIAKERMKVMQETTDGFVISEKDLLIRGPGEFFGTRQHGLPDLKIANLYRDM 648

Query: 654 SLL 656
            +L
Sbjct: 649 EIL 651


>gi|291545912|emb|CBL19020.1| ATP-dependent DNA helicase RecG [Ruminococcus sp. SR1/5]
          Length = 686

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 230/688 (33%), Positives = 376/688 (54%), Gaps = 18/688 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            PL   +GVG+K      KI        T   +LL Y+P ++       +I+   E++ V
Sbjct: 5   TPLRELKGVGEKTEKLFQKI------GITTAEELLRYYPRTYDIYEEPVEIASAEEDKTV 58

Query: 71  TITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           +I   I+      Q++  +     + D +G + + +F      L+    +G    + GKI
Sbjct: 59  SIRATIATGIYINQIRNLQVLTTTVADASGRLPVAWFN--APYLRGTLKKGSVFILRGKI 116

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            + K R  M HP      + +     ++ VY L  GLS  +  K++ + L   P+  E++
Sbjct: 117 IRKKGRPQMEHPEIFTPAAYEEIIHSMQPVYGLTKGLSNKMITKLVHQILDTRPLHGEYL 176

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            +++ ++        A   IH P+  ++      AR+RL +DE L   +A+ L++++ ++
Sbjct: 177 PEEIRERYQLADANYAIRTIHFPKNMQEL---LTARKRLVFDEFLLFVLAIQLLKEKTEE 233

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                        ++I+  +P+  T +Q++   +I +D+S    M R++QGDVGSGKT++
Sbjct: 234 APNTFPMKPVWTTEEIIEGLPYDLTGAQKNVWHEIERDLSGHKLMSRLVQGDVGSGKTVI 293

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI---IVEIITGNMPQAHRRK 366
           A +AM  + E G Q+ +M P  +LA QHYE   +  +   I      ++TG+     +R+
Sbjct: 294 AFLAMVLSAENGFQSALMVPTEVLANQHYEGFLRLMEEQNIASCHPVLLTGSTTARQKRE 353

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             ++IA G+ ++IIGTHAL Q+ ++Y  L LVI DEQHRFGV+QR  LT +   PHVL+M
Sbjct: 354 IYQKIADGEVNVIIGTHALIQEKVEYKNLGLVITDEQHRFGVRQREALTTRGNPPHVLVM 413

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL +   GD+DIS I E PA R PIK  ++  +   +    ++  +  G++AY
Sbjct: 414 SATPIPRTLAIILYGDLDISIIDELPAKRLPIKNCVVGTSYRPKAYSFIEKQVQMGRQAY 473

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP +EE +     +V +    L E       + I+HG+M   +K  +M++F +G  ++
Sbjct: 474 VICPMVEESEGLEAENVTDYARKLQEILPGEIKVEILHGKMKPKEKNRIMEAFASGEIQV 533

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE  S CI +      +N+
Sbjct: 534 LVSTTVVEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEHQSYCIFI-QGNNEENT 592

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL +L  + DGF IA EDLK R  G++ GI+QSG+ +F I        +L+ A + A 
Sbjct: 593 SKRLKILNESNDGFYIAGEDLKLRGPGDLFGIRQSGLMEFKIGDIYNDAGILKNASEAAG 652

Query: 665 HILTQDPDLTSVRGQSIRILLYLYQYNE 692
            IL  D DL   + ++++  L  Y   E
Sbjct: 653 EILALDFDLILPQHKALKEHLKGYMSEE 680


>gi|16800991|ref|NP_471259.1| ATP-dependent DNA helicase RecG [Listeria innocua Clip11262]
 gi|16414426|emb|CAC97155.1| lin1925 [Listeria innocua Clip11262]
          Length = 682

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 237/680 (34%), Positives = 378/680 (55%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++      K+      ++     I + FF +    LKN    G  +T++GK 
Sbjct: 61  IQGEVLTEATVAFYGHKKSKLSFRVSTEGQVIKIDFFNQ--PYLKNKISVGETVTISGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            K + +I           +++     +E VY L   L     +K    A       + E 
Sbjct: 119 DKSRAQITASKIKIGAVENEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSKDIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  ++H P+  ++      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPTNLLEKYQLMDRLEAVRVLHFPKNNEEL---KQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRILREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYVPGLMHGKLLPADKEQIMRDFNDKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG E S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGAEQSYCILIADPK-TEVGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H
Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +     +  LL
Sbjct: 651 MIFEENMLENKTYDKLVALL 670


>gi|328466166|gb|EGF37323.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes 1816]
          Length = 682

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 237/680 (34%), Positives = 380/680 (55%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKISVGETVTISGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
            K + ++           S++     +E VY L   L     +K    A       + E 
Sbjct: 119 DKSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P+  ++      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPSNLLEKYQLMDRLEAVRILHFPKNNEEL---KQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP I E ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F N     L
Sbjct: 472 ICPLIGESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNNKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H
Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 651 MIFEEDMLENKNYEKLVALL 670


>gi|19746733|ref|NP_607869.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS8232]
 gi|94994975|ref|YP_603073.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS10750]
 gi|19748960|gb|AAL98368.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
           MGAS8232]
 gi|94548483|gb|ABF38529.1| ATP-dependent DNA helicase recG [Streptococcus pyogenes MGAS10750]
          Length = 671

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 241/672 (35%), Positives = 375/672 (55%), Gaps = 30/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D      + ++ +  
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDF-KSKSVFDLVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 56  KAVITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQ--PYLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK    K+ I  +    +    +D     ++ VY +  G+S     K I  A      L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDD----MQPVYRVAQGISQSTLIKAIKSAFEIDAHLE 166

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + + E   +PI       +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDVG
Sbjct: 224 AENRSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++      + + I+T  M  A 
Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELF--PDLSIAILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPDL 673
            +  I++ DP+ 
Sbjct: 641 VSAAIVS-DPNW 651


>gi|77408999|ref|ZP_00785719.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae COH1]
 gi|77172383|gb|EAO75532.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae COH1]
          Length = 671

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 237/669 (35%), Positives = 370/669 (55%), Gaps = 29/669 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P+S  +G G K +    K+      +     DLL Y+P  + D      + ++ +  
Sbjct: 3   LQSPISNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDF-KSKSVFDLVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 56  KAVITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQ--PYLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK    K+ I  +    +    +D     ++ VY +  G+S     K I  A      L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDD----MQPVYRVSQGISQSTLIKAIKSAFEINAHLE 166

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             E +   LL K      ++A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLGKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E   + I       +  + ++PF  T +Q+ ++ +IL DMS    M R+LQGDVG
Sbjct: 224 AENKSETNGLSILYSKHAMETKISSLPFILTNAQKRSLDEILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++      + + I+T  M  A 
Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELF--PDLSIAILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR+
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARR 640

Query: 662 DAKHILTQD 670
            A  I+  +
Sbjct: 641 VASDIVKDN 649


>gi|329116832|ref|ZP_08245549.1| ATP-dependent DNA helicase RecG [Streptococcus parauberis NCFD
           2020]
 gi|326907237|gb|EGE54151.1| ATP-dependent DNA helicase RecG [Streptococcus parauberis NCFD
           2020]
          Length = 671

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 242/684 (35%), Positives = 376/684 (54%), Gaps = 29/684 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P+S  +G+G K +    ++            DLL Y+P  + D      + ++ +  
Sbjct: 3   LQSPISELKGLGPKSAEKFHQL------EIYTIEDLLIYYPFRYEDF-KSKSVFDLQDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              +TG +   ++ Q    KR      +      I + FF +    L +     +++ + 
Sbjct: 56  KAVLTGQVVTPATVQYYGFKRNRLSFKIKQDELVIAVNFFNQ--PYLADKVEIDKEVAIF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPV 184
           GK  + K  +  +   ++     D     ++ VY    G+S     K I  A     L  
Sbjct: 114 GKWDQKKAALTGMK--FLMSLEDD-----LQPVYHTVQGVSQTALIKAIKAAFDANVLDQ 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E I   LLQK       +A   +H P   KD      A  R+ ++EL   Q+ L L++
Sbjct: 167 IKENIPALLLQKYKLMPRQDAIRAMHFP---KDLREYKLALRRIKFEELFYFQMHLQLLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
              K E   + IN   +    ++ N+PF  T +Q  ++++IL DM   + M R+LQGDVG
Sbjct: 224 VANKSESSGLAINFSQEAVNAVITNLPFPLTGAQNKSLREILADMKSGHHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A +AM AA  AG Q+ +M P  ILA+QHY+ + +      + + I+   M  A 
Sbjct: 284 SGKTVIASLAMYAAYTAGFQSALMVPTEILAEQHYDSLSQLF--PDLSIAILKSGMKVAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR AL  IA G   +I+GTHAL QD++QY+ L LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 RRTALAAIADGSVDMIVGTHALIQDAVQYHHLGLVITDEQHRFGVKQRRIFREKGDNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +    +D+V+  +   +++G 
Sbjct: 402 LMMTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQELDKVLPWIMDEIAQGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V   + L ++F   + IA++HG+M + DK+++M +FKN  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALESELKDYFKESARIALMHGKMKNEDKDAIMQAFKNKE 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             LL++TTVIEVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG + S  IL+ +P  +
Sbjct: 522 TDLLVSTTVIEVGVNVPNATIMMIMDADRFGLSQLHQLRGRVGRGHKQSYAILVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R+ ++  T DGF++AE DLK R  GEI G +QSG+P+F  A      ++LE AR+
Sbjct: 581 DSGKKRMRIMTETTDGFVLAEADLKMRGSGEIFGTRQSGIPEFKTADIVEDYNILEEARR 640

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
            A  I++Q       R Q+I   L
Sbjct: 641 IASEIVSQVAWQEDDRWQAILPNL 664


>gi|47096532|ref|ZP_00234122.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes str. 1/2a
           F6854]
 gi|47015064|gb|EAL06007.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes str. 1/2a
           F6854]
          Length = 697

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 237/680 (34%), Positives = 381/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 23  PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 75

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 76  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKISVGETVTISGKW 133

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
            K + ++           S++     +E VY L   L     +K    A       + E 
Sbjct: 134 DKSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 189

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P+  ++      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 190 IPGNLLEKYQLMDRLEAVRILHFPKNNEEL---KQARRRMVYEEFLLFQLKMQFFRKIER 246

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 247 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 306

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 307 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 366

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 367 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 426

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 427 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 486

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 487 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCL 546

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 547 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 605

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H
Sbjct: 606 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVH 665

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 666 MIFEEDMLENKNYEKLVALL 685


>gi|115350668|ref|YP_772507.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria AMMD]
 gi|115280656|gb|ABI86173.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria AMMD]
          Length = 785

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/696 (35%), Positives = 376/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      I E+    I    G +   + 
Sbjct: 101 KTADKLAKL------GLTRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFD-NE 153

Query: 82  FQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + + D  GE + L F       +K +   G+++ V G ++     + MVH
Sbjct: 154 VAYRPRRQLVVKIQDDDGEQLVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGMEMVH 212

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P             ++  VY    G+S    +K I  A+ R P LPE +  ++    L+ 
Sbjct: 213 PAVRVVEVDAPLPQVLTPVYPSTAGVSQAYLRKAIENAVERTP-LPELLPPEIERDYLKP 271

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P++A+A  I+H+P    D     + + PA  R+ ++ELLA Q++L    ++ +    
Sbjct: 272 LGVPTLAQAVRILHHPGVDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRTA 331

Query: 253 IPINVE-----GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +          +  ++   +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT
Sbjct: 332 PAMPRRAATDADALTTRLYAALPFTLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKT 391

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A   A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 392 VVAALAATQAIDAGYQAALMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAA 451

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           +E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 452 IEAAALGTAQLVIGTHAIIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARD 511

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+++S I E P GR P+ T ++   R +EVI R++  
Sbjct: 512 FQPHQLMMSATPIPRTLAMTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREA 571

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR+S  DK +VM++F
Sbjct: 572 ALTGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMEAF 631

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 632 TRNEVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYT 691

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L++
Sbjct: 692 GPLSLTGRERLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLID 751

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   PD+ +      R L    QY +A
Sbjct: 752 PARDAAARLIAAYPDVVTQ--HLARWLGAREQYLKA 785


>gi|134294797|ref|YP_001118532.1| ATP-dependent DNA helicase RecG [Burkholderia vietnamiensis G4]
 gi|134137954|gb|ABO53697.1| ATP-dependent DNA helicase RecG [Burkholderia vietnamiensis G4]
          Length = 783

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 247/696 (35%), Positives = 377/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      I E+    I    G +   + 
Sbjct: 99  KTADKLAKL------GLTRSIDLVLHLPMRYEDETTLTPIDELLPGGIAQTEGVVFD-NE 151

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + + D  G ++ L F       +K +   G+++ V G ++     + MVH
Sbjct: 152 VAYRPRRQLVVKIRDDDGAQLVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGMEMVH 210

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P      +      ++  VY    G+S    +K I  A+ R P LPE +  ++    L+ 
Sbjct: 211 PAVRVVEADAPLPQVLTPVYPSTAGVSQAYLRKAIENAVERTP-LPELLPPEIERDYLKP 269

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P++A+A  I+H+P    D     + + PA  R+ ++ELLA Q++L    ++ +    
Sbjct: 270 LGVPTLAQAVRILHHPGVDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRSA 329

Query: 253 IPINVE-----GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +        G +  ++   +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT
Sbjct: 330 PAMPRRAADDAGSLTTRLYAALPFTLTGAQSRVVDEIAHDLTLPHPMQRLLQGDVGSGKT 389

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A   A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 390 VVAALAATQAIDAGYQAALMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAA 449

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           +E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 450 IEAAALGTAQLVIGTHAIIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARD 509

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+++S I E P GR P+ T ++   R  EVI R++  
Sbjct: 510 FQPHQLMMSATPIPRTLAMTYYADLEVSTIDELPPGRTPVLTRLVADARRGEVIARVREA 569

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR+S  DK +VMD+F
Sbjct: 570 ALTGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAF 629

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 630 TRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYS 689

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L++
Sbjct: 690 GPLSLAGRERLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLID 749

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   PD+ +      R L    QY +A
Sbjct: 750 PARDAASRLIAAYPDVVTQ--HLARWLGAREQYLKA 783


>gi|313159146|gb|EFR58521.1| ATP-dependent DNA helicase RecG [Alistipes sp. HGB5]
          Length = 702

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 242/707 (34%), Positives = 376/707 (53%), Gaps = 25/707 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   +    GVG+  +  L K +           D+L ++P  +IDR    +I+EI+
Sbjct: 1   MEYLDNDIKYVGGVGEARARLLDKEL-----GIRTLGDMLSHYPFRYIDRTKVYRIAEIT 55

Query: 66  EE--RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           E    ++     I+  +     +++ +   + D TG   L++F +  + ++     GR+ 
Sbjct: 56  EGAPTLLQFRARITGVAYAGTGRKKRFTAYVQDPTGSAELVWF-QGIKWIEKRVEVGREY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQ--DVNFPLIEAVYSLPTGLSV----DLFKKIIVE 177
            + G+    +  + M HP                ++ +Y     LS         +II  
Sbjct: 115 LIFGRPSFYRGLLSMAHPELETMEQALSRKAESGMQGIYPSTEKLSNVLGAKGMYQIICN 174

Query: 178 ALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
             + +   + + + + +  +     + +A+  IH P+ A   E    A+ RL +DELL  
Sbjct: 175 TWALVKDHITDCMPEAVRARYGLIPLRDAYYNIHFPQSA---EMLRQAQYRLKFDELLGI 231

Query: 237 QIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           Q+ +   R  +  K    + + V G         +PF  T +Q+  +K+I QD     +M
Sbjct: 232 QLNVQSRRTERLSKNNGFLFMKVGGVFNTFYNEKLPFPLTGAQKRVVKEIRQDTVTGFQM 291

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVGSGKTLVAL++M  AV+ G QA +MAP  ILA+QH+  I +  +   +   +
Sbjct: 292 NRLLQGDVGSGKTLVALMSMLLAVDNGFQACMMAPTEILARQHFATITRMLEGMDVKTAV 351

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+     RR ALE IA G+  I+IGTHAL +D +Q+  L  V++DEQHRFGV+QR +L
Sbjct: 352 LTGSSKVKERRLALEGIASGEVDILIGTHALIEDRVQFANLGFVVIDEQHRFGVEQRARL 411

Query: 415 T-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             +    PH+L+MTATPIPRTL +T  GD+D+S I E P GR+PIKTV         +  
Sbjct: 412 WTKNEQPPHILVMTATPIPRTLAMTLYGDLDVSVIDELPPGRRPIKTVHYTDAARLRLFG 471

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDK 530
            +K  +++G++ Y + P I+E +  +++ + + + ++   F        I HG+M   DK
Sbjct: 472 FMKQEIAKGRQVYVVYPLIKESEAMDYKDLTDGYEAISRDFPLPDYVTTICHGKMKPADK 531

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E  M  FK+G   +++AT+VIEVG+DV +A++++IE+AE FGL+QLHQLRGRVGRG E S
Sbjct: 532 EESMRQFKSGEADIMVATSVIEVGVDVPNATVMVIESAERFGLSQLHQLRGRVGRGGEQS 591

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQP 649
            CIL+    LSK S  RL  +  T DGF +AE DLK R  G+I G  QSGM     IA P
Sbjct: 592 YCILMSGEKLSKESRARLQAMCETNDGFRLAELDLKLRGAGDINGTLQSGMAFDLKIANP 651

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
            L   +L ++R+ A  ILT D DL+    + ++ L   Y   E   F
Sbjct: 652 TLDVQILTVSREAAAAILTADRDLSLPEHRGLQELRRKYSGQEEIDF 698


>gi|139473203|ref|YP_001127918.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes str.
           Manfredo]
 gi|134271449|emb|CAM29669.1| ATP-dependent DNA helicase [Streptococcus pyogenes str. Manfredo]
          Length = 671

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 242/672 (36%), Positives = 375/672 (55%), Gaps = 30/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D      + ++ +  
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDF-KSKSVFDLVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 56  KAVITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQ--PYLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK    K+ I  +    +    +D     ++ VY +  G+S     K I  A      L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDD----MQPVYRVAQGISQSTLIKAIKSAFEIDAHLE 166

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E   +PI       +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDVG
Sbjct: 224 AENKSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++      + + I+T  M  A 
Sbjct: 284 SGKTVIASLSMYAAYTAGFQSALMVPTEILAEQHYISLQELF--PDLSIAILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPDL 673
            +  I++ DP+ 
Sbjct: 641 VSAAIVS-DPNW 651


>gi|300725269|ref|YP_003714598.1| DNA helicase [Xenorhabdus nematophila ATCC 19061]
 gi|297631815|emb|CBJ92536.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Xenorhabdus nematophila ATCC 19061]
          Length = 693

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 250/707 (35%), Positives = 393/707 (55%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +   L+T RGVG      L+K+      +    +         + D+ +   
Sbjct: 1   MKGQLLDAI--SLTTLRGVGTNQVTKLAKLGLVNLQDLLLHLP------LRYEDQTHLYT 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+E+      T+TG + + +     +RR     ++DGTG +TL FF   T  +KN   EG
Sbjct: 53  INELLPGIYATVTGEVLRTNVV-FGRRRIMTCQISDGTGVLTLRFFNF-TAAMKNNLAEG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + I   G+I++      ++HP Y              +  VY    G+     +K+I +A
Sbjct: 111 KHIVAYGEIRRGNQGPEIIHPEYKVQQHAARVQLQDTLTPVYPTTEGVRQTTLRKLIEQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDE 232
           L  L    + E + ++    ++  S+  A +++H P       D E    PA+ RL  +E
Sbjct: 171 LEILDTCAVNELLPEEF--SRNMISLPNALHMLHRPPPDISLTDLENGRHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++ +  + Q++L  +PFSPT +Q   + +I  D+ +  
Sbjct: 229 LLAHHLSMLAVRAGAQRFHAQPLSADDTLKQQLLSQLPFSPTGAQARVVAEIEHDLEKNV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V
Sbjct: 289 PMMRLIQGDVGSGKTLVAALAAVRAMVHGKQVALMAPTELLAEQHANTFRQWLEPLGMQV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ ++IIGTHA+FQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVNMIIGTHAMFQEQVKFAGLALVIIDEQHRFGVHQRL 408

Query: 413 KL----TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L     ++   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGREQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +++I+R+K   L EG++AYW+C  IE+ +    ++       L        I ++HGRM 
Sbjct: 469 NDIIQRIKSACLEEGRQAYWVCTLIEDSEVLEAQAAQATSEELALALPELKIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+++M++FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 529 SAEKQAIMEAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PL+  +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F I
Sbjct: 589 AIASHCVLLYKTPLTHTAKIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNTEFRI 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A      ++L   ++ A+++    P     +    R L    QY+ A
Sbjct: 649 ADLLRDQNMLPEVQRIARYLHQHYP--QHAKALIERWLPDSSQYSHA 693


>gi|260591802|ref|ZP_05857260.1| ATP-dependent DNA helicase RecG [Prevotella veroralis F0319]
 gi|260536086|gb|EEX18703.1| ATP-dependent DNA helicase RecG [Prevotella veroralis F0319]
          Length = 698

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 229/689 (33%), Positives = 379/689 (55%), Gaps = 22/689 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++ L   +    GVG +    LSK +         + DLL Y+P  ++DR     +SE+S
Sbjct: 1   MDILSQDIMYLPGVGPRRKEILSKEL-----GILTYRDLLEYYPYKYVDRTKVYLLSELS 55

Query: 66  EERI-VTITGYISQHSSFQLQKRRPYKI-LLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            +   V +   I  +  F++ KRR   +    DG G   +++F   T+ +   +   ++ 
Sbjct: 56  ADMPFVQVKCKILSYEEFEVGKRRKRIVAHATDGHGICDIVWFN-GTKYIYQNYQINKEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEA 178
            + GK      R    HP     +   +N   ++  Y         G++    +K+    
Sbjct: 115 IIFGKPTYYNGRFQFSHPDIDDASQLQLNDMGMQPFYITTEKMKKAGITSRAMEKLTKTL 174

Query: 179 LSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           +S+L   L E +   +  +    S   A   IH P+   D   T  AR RL ++EL   Q
Sbjct: 175 ISKLTTPLEETLPPYITTRLHLISHDAAMRKIHYPKSVDD---TQRARIRLKFEELFYVQ 231

Query: 238 IALLLMRK-QFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L       +K  G   N  G         N+PF  T +Q+  + +I  DM    +M 
Sbjct: 232 LNILRYASDHRRKYRGYIFNRIGAQFNWFYTHNLPFELTGAQKRVMHEIRADMMSGKQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA+QH + IK++ +   + +E++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLIAIDNGYQACMMAPTEILAEQHLQTIKEFLKGMNLRIELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG +    R++ L  +  G  +I++GTHA+ +D +Q+  L + +VDEQHRFGV QR KL 
Sbjct: 352 TGIVKGKKRKEVLAGLVDGSINIVVGTHAIIEDKVQFLNLGMAVVDEQHRFGVAQRAKLW 411

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +    PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    +++  + + 
Sbjct: 412 SKSENPPHILVMTATPIPRTLAMTIYGDLDVSIIDELPPGRKPIQTIHKYDDQMTSLYQG 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           ++  ++ G++ Y + P I+E +  + +++ + + ++ E F    ++ IHG+M D +KE  
Sbjct: 472 IRQQITLGRQVYIVYPLIKESERIDLKNLEDGYAAMCEIFPEFKLSKIHGKMKDKEKEVE 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S CI
Sbjct: 532 MQKFVSGETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELH 652
           L+ +  L+K +  R+ ++  T DGF IAE DLK R  G++ G +QSG+     IA     
Sbjct: 592 LVTNHKLTKETSKRIDIMCETNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             ++++AR++A+ ++  DP    +  + +
Sbjct: 652 GQIVQMAREEAQKVIDNDPTCQKIEYKLL 680


>gi|290893059|ref|ZP_06556048.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J2-071]
 gi|290557419|gb|EFD90944.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J2-071]
          Length = 682

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 236/680 (34%), Positives = 381/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKISVGETVTISGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
            K + ++           +++     +E VY L   L     +K    A       + E 
Sbjct: 119 DKSRAQVTASKIKIGAVENEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P+  ++      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPTNLLEKYQLMDRLEAVRILHFPKNNEEL---KQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWDTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H
Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 651 MIFEEDMLENKNYEKLVALL 670


>gi|83815366|ref|YP_444415.1| ATP-dependent DNA helicase RecG [Salinibacter ruber DSM 13855]
 gi|83756760|gb|ABC44873.1| ATP-dependent DNA helicase RecG [Salinibacter ruber DSM 13855]
          Length = 700

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 231/704 (32%), Positives = 377/704 (53%), Gaps = 21/704 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE- 67
           L   +   +GVG+K +      +           DLL ++P  ++DR     + ++ E  
Sbjct: 6   LQQDVRYVKGVGEKRAD-----VWAEQHGVRTVHDLLRFYPRRYLDRTTVTPVRQLQEGP 60

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVT 126
             VT+ G +   +      ++  +I+L    G  +   +F +    ++  F EG ++   
Sbjct: 61  DSVTVVGTVRSVNVVPGNNQKRLEIILEGEQGGRMKGTWF-QGVWWVRKAFDEGDRVAFH 119

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPT-----GLSVDLFKKIIVEAL 179
           G ++K      M HP +   N +   ++   I  +Y         GL+    ++++ +  
Sbjct: 120 GTVEKYGRWHSMTHPDFDRLNDEGPLLDTGRIVPLYPGGEAMSNVGLTSRTVRRVLYDLF 179

Query: 180 SRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
               + L E +   ++          A   IH P+  ++    S AR RL ++EL   Q+
Sbjct: 180 KEHGLKLTETMPDWIMDGYDLMEGRVALRAIHFPKTQQEL---SRARRRLKFEELFFIQL 236

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            L  M +Q ++  G   +  G   ++ +   +PF  T +Q  A+++I+ D+    +M R+
Sbjct: 237 LLAQMHEQQEEVAGPAFDDPGAYTREFVREVLPFELTGAQTRALREIIGDVQTGTQMNRL 296

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VA+ AM  A ++G Q+  MAP  ILA+QH+  ++ Y Q   +   ++ G
Sbjct: 297 LQGDVGSGKTVVAVAAMMHAYDSGYQSAFMAPTEILAEQHHANLQDYLQPLGLEPRLLIG 356

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           +  +A R  AL+ +  G + + +GTHAL QD + + +L L +VDEQHRFGV QR ++ +K
Sbjct: 357 SQTKAEREAALQAVRSGASPVAVGTHALIQDEVAFDRLGLAVVDEQHRFGVAQRAEMFEK 416

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH+LLMTATPIPR+L LT  GD+D+SKI E P GRKP++T +    R  EV   L  
Sbjct: 417 GERPHMLLMTATPIPRSLALTLYGDLDVSKIDEMPPGRKPVETRLRAEKRRGEVYAFLND 476

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L +G++A+ + P +EE ++ + +        L E F   ++ ++HG++S  DK++ M  
Sbjct: 477 RLEQGEQAFVVYPLVEESEKMDLKDAESGAQELQEKFPDYTVGLVHGQLSADDKDATMRR 536

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G   LL+ATTVIEVG+DV +A+++++E+AE FGL+QLHQLRGRVGR ++ S C+L+ 
Sbjct: 537 FKEGDIDLLVATTVIEVGVDVPNATVMLVEHAERFGLSQLHQLRGRVGRSDQQSYCVLMA 596

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
               S+ +  RL  +  T DGF I+E DL+ R  G+  G +QSGMP   IA     D +L
Sbjct: 597 SYKRSQEAKQRLEAMARTNDGFEISETDLQIRGAGDFFGTRQSGMPDLKIADLTEDDEIL 656

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           E+AR+ A  ++ +DP L +   + +R             F R G
Sbjct: 657 EVAREAAFALIEKDPHLRADEHERLRRRYQEDYAEHGLGFARVG 700


>gi|238022292|ref|ZP_04602718.1| hypothetical protein GCWU000324_02199 [Kingella oralis ATCC 51147]
 gi|237866906|gb|EEP67948.1| hypothetical protein GCWU000324_02199 [Kingella oralis ATCC 51147]
          Length = 681

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 236/670 (35%), Positives = 362/670 (54%), Gaps = 18/670 (2%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
             +  L K+      +     DL  + P  + D  +   I+         + G +     
Sbjct: 14  ATAQKLEKL------HIHTAWDLALHLPLRYEDETHITPIAAAPIGETCQVEGEVV-LQE 66

Query: 82  FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
            Q + R+     + D  G +  L F       +    +G+++   G+IK+      M+HP
Sbjct: 67  VQFKPRKQLIARIRDNAGGLLNLRFIHFYPSQQQQLAKGQRVRALGEIKQGYYGAEMIHP 126

Query: 142 HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPS 201
                  +      +  VY    GL+    +K I  AL  L  L E + + +L++ + P+
Sbjct: 127 KIK-SPEKSELAQTLTPVYPTTNGLTQPTLRKAIAAALQHLD-LREILPESVLRQYNLPT 184

Query: 202 IAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
           +A++  ++HNP  + +    S    PA +RL +DELLA Q+++ L +++ +     P+  
Sbjct: 185 LADSLRLLHNPPPSINLAQISNGALPAWQRLKFDELLAQQLSMRLAKQKRRSGSLKPLIG 244

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            G +   ++  +PF  T++Q+    +I  D++Q + M R+LQGDVGSGKT+VA +A   A
Sbjct: 245 NGSLTDALIAQLPFGLTRAQQRVFNEIRADLAQPHPMHRLLQGDVGSGKTIVAALAALVA 304

Query: 318 VEA--GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           +E   G QA +MAP  ILA+QHY   K++ +   I V  ++G++ +  + +A   IA G+
Sbjct: 305 LEDAGGFQAAVMAPTEILAEQHYIKFKQWLEPLGISVAWLSGSLKKRDKDQARAAIADGR 364

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             + IGTHALFQD + ++ L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRTL
Sbjct: 365 IRLAIGTHALFQDDVAFHNLGLVIVDEQHRFGVAQRLALKNKGQDVHQLMMSATPIPRTL 424

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            ++   D+D+S I E P  R PIKT ++   R  EV   +     +G++AYW+CP IEE 
Sbjct: 425 AMSFFADLDVSTIDELPPNRTPIKTKLVNNVRRAEVEGFVLNTCQKGQQAYWVCPLIEES 484

Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                ++  E    L       +I ++HGRM   +K  +M  F  G+  +L+ATTVIEVG
Sbjct: 485 DSLQLKAATETLAELQAALPQLNIGLVHGRMKPAEKAEIMAQFVAGSLNVLVATTVIEVG 544

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +AS+++IE+AE  GLAQLHQLRGRVGRG   S+C+LL+  PL +    RL V+   
Sbjct: 545 VDVPNASLMVIEHAERMGLAQLHQLRGRVGRGAAASTCVLLFAEPLGQVGKQRLKVIYEN 604

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            DGF IA +DL+ R  G+ LG++QSG      A  E    LLE AR+ A  ++ Q P++ 
Sbjct: 605 TDGFEIARQDLEIRGAGDFLGVRQSGAMMLRFANLEQDLELLEHARQLAPLLIEQQPEI- 663

Query: 675 SVRGQSIRIL 684
            V+    R L
Sbjct: 664 -VQAHLERWL 672


>gi|27464917|gb|AAO16242.1| ATP-dependent DNA helicase RecG [Acetobacter aceti]
          Length = 716

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 257/703 (36%), Positives = 405/703 (57%), Gaps = 21/703 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE-- 63
           L PLFA L++  G+G +++  L KI     A   R +DLLF  P   +DR     +++  
Sbjct: 27  LAPLFASLTSLPGIGPRHATLLEKI-----AGGRRVLDLLFTLPERVVDRRILRTVADGY 81

Query: 64  -ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFY-RKTEMLKNVFFEGR 121
            ++   I+T    +        +  +P  I   D TG++ L+FF  R           G 
Sbjct: 82  NLAPGEILTAHVRVLALRKAG-RPGQPSIIRTEDDTGKLDLVFFQTRNMP----SPTIGA 136

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           ++ V+GK    +  + M  P ++   ++  +FP +E V+ L  GL     +K +  AL+ 
Sbjct: 137 ELLVSGKTGTFQGELTMPQPDHVVSWAKRDSFPSLEPVWPLTAGLFPYTVRKAMRAALAL 196

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK-AKDFEWTSPARE---RLAYDELLAGQ 237
           LP LPEW++  L+ ++ +PS  +A  ++ +P     +  W         RLA DELLA Q
Sbjct: 197 LPDLPEWLDPALVTQRKWPSFTQALRLMQSPEIIPPEIAWEPVRNRALSRLAADELLADQ 256

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +   L R + ++  G      G++  ++LR     PT +Q  AI +I  D+S    M+R+
Sbjct: 257 LCFGLARLKARERHGRSFPGTGELQAEMLRRFGHKPTHAQTLAIAEIAADLSASTPMMRL 316

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVG+GKT VA+ AM   VE+G QA +MAP  ILA+QH+E + +           ++G
Sbjct: 317 LQGDVGAGKTFVAMNAMLQTVESGAQAALMAPTEILARQHFETLSRLC---PTECVYLSG 373

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +  A RRK L  IA G A I++GTHALFQD + ++ L L ++D+QHRFGV+QR+ L+ K
Sbjct: 374 TIKGAARRKTLAAIADGTAKIVVGTHALFQDGVTFHDLGLAVIDQQHRFGVRQRMNLSAK 433

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             A  +L+MTATPIPRTL L   G++ +S++  KP GR+PI+T +  ++ +D V+  +  
Sbjct: 434 GEATDILVMTATPIPRTLQLMEWGEMSVSRLDSKPPGRQPIRTTLHSMDSLDSVLAGISR 493

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            L +G + +W+CP IE  +     +  ER+ SL + F   + + HG+     ++  +D F
Sbjct: 494 ALRDGVQVFWVCPLIENSETQAAAAAEERWASLEQRFEGLVGLAHGKQDITVRQEALDRF 553

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + G  +LL+ATTVIEVG+D+  AS+++IE AE FGLAQLHQLRGRVGRG + S C+LL+ 
Sbjct: 554 RLGKTRLLVATTVIEVGVDIPAASVMVIEQAERFGLAQLHQLRGRVGRGSKQSFCLLLHD 613

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
              +  +  RLS+L++T DGFLIA+ED + R  G+I G +QSG+P F +AQ      LL 
Sbjct: 614 RAATPTAVRRLSLLRDTNDGFLIADEDYRIRGGGDIAGDRQSGLPGFRLAQGARLSLLLT 673

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             ++D++  + ++P L   RG ++R+LL ++  N+  + + +G
Sbjct: 674 AMQQDSEREIARNPHLEGPRGHALRLLLEIFDRNDPDRLLISG 716


>gi|224500042|ref|ZP_03668391.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes Finland
           1988]
 gi|254829194|ref|ZP_05233881.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL N3-165]
 gi|254831587|ref|ZP_05236242.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes 10403S]
 gi|254899492|ref|ZP_05259416.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes J0161]
 gi|254912369|ref|ZP_05262381.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes J2818]
 gi|254936696|ref|ZP_05268393.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes F6900]
 gi|258601604|gb|EEW14929.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL N3-165]
 gi|258609293|gb|EEW21901.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes F6900]
 gi|293590351|gb|EFF98685.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes J2818]
          Length = 682

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 237/680 (34%), Positives = 381/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKISVGETVTISGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
            K + ++           S++     +E VY L   L     +K    A       + E 
Sbjct: 119 DKSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P+  ++      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPGNLLEKYQLMDRLEAVRILHFPKNNEEL---KQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H
Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 651 MIFEEDMLENKNYEKLVALL 670


>gi|330996640|ref|ZP_08320518.1| ATP-dependent DNA helicase RecG [Paraprevotella xylaniphila YIT
           11841]
 gi|329572712|gb|EGG54345.1| ATP-dependent DNA helicase RecG [Paraprevotella xylaniphila YIT
           11841]
          Length = 698

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 236/683 (34%), Positives = 371/683 (54%), Gaps = 21/683 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-I 69
             +    GVG + +  L               DLL+  P   IDR     I E++ +   
Sbjct: 7   QDIKFLPGVGPQRAKLL-----GDELQIRTLHDLLYTFPYKHIDRTRLYYIHELTADMPY 61

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           V I G I    +    ++R       DG G + L++F    + + + +       V G+ 
Sbjct: 62  VQIRGQILSFDTEGEGRKRRLVAHFTDGQGVVDLIWFN-GIKYILSAYKTRTDYIVFGRP 120

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRLP- 183
                RI + HP     +   +N   ++  Y+        GL+    +        RL  
Sbjct: 121 SVFNGRINIAHPDVDKADELRLNTMGLQPYYTTTDKMKRAGLNSRSIEHFTATLFERLDA 180

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-L 242
            +PE +   L+   +  S+ EA   +H P  A+D      A+ RL ++EL   Q+ ++  
Sbjct: 181 EIPETLPPYLVSALNLVSLDEALRHVHYPTSAEDL---RKAQFRLKFEELFYIQLNIIKY 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            R++ +K  G      G++       N+PF  T +Q+  I++I QDM    +M R+LQGD
Sbjct: 238 ARERRQKYRGYVFARVGELFHTFYEKNLPFELTGAQKRVIREIRQDMGSGRQMNRLLQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVAL+++  A++ G QA IMAP  ILA+QHY   +       + VE++TG +  
Sbjct: 298 VGSGKTLVALMSILIALDNGFQACIMAPTEILAEQHYVTFQNLLSGMPVRVELLTGTVKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATA 420
             R+  L+ +  G+  I++GTHA+ +D++ +  L +V++DEQHRFGV QR +L  + +  
Sbjct: 358 KRRQAVLDGLKDGEVRILVGTHAVLEDTVLFKSLGMVVIDEQHRFGVAQRARLWAKNSNP 417

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+TV    NR + +   L+  L+
Sbjct: 418 PHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTVHQFDNRRESLYRGLRSQLN 477

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           EG++AY + P I+E ++ + +++ E +  L        I+ +HG+M   +KE+ M  F +
Sbjct: 478 EGRQAYVVYPLIKESEKMDIKNLEEGYEQLCRDLPEYKISRVHGKMKAAEKEAEMQDFIS 537

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L+ATTVIEVG++V +AS+++IENAE FGLAQLHQLRGRVGRG + S CIL+    
Sbjct: 538 GKTQILVATTVIEVGVNVPNASVMVIENAERFGLAQLHQLRGRVGRGADQSYCILVTKYQ 597

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEI 658
           LS ++  R+ ++  T DGF IAE DLK R  G++ G +QSG+     +A       +L++
Sbjct: 598 LSADTRKRIQIMTETNDGFEIAEADLKLRGPGDLEGTQQSGVSFTLRLANLARDGQVLQL 657

Query: 659 ARKDAKHILTQDPDLTSVRGQSI 681
           AR+ A+ +L  DP   + +   +
Sbjct: 658 ARETAEKVLDDDPHCAASKNDIL 680


>gi|284802257|ref|YP_003414122.1| hypothetical protein LM5578_2013 [Listeria monocytogenes 08-5578]
 gi|284995399|ref|YP_003417167.1| hypothetical protein LM5923_1964 [Listeria monocytogenes 08-5923]
 gi|284057819|gb|ADB68760.1| hypothetical protein LM5578_2013 [Listeria monocytogenes 08-5578]
 gi|284060866|gb|ADB71805.1| hypothetical protein LM5923_1964 [Listeria monocytogenes 08-5923]
          Length = 697

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 237/680 (34%), Positives = 381/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 23  PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 75

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 76  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKISVGETVTISGKW 133

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
            K + ++           S++     +E VY L   L     +K    A       + E 
Sbjct: 134 DKSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 189

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P+  ++      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 190 IPGNLLEKYQLMDRLEAVRILHFPKNNEEL---KQARRRMVYEEFLLFQLKMQFFRKIER 246

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 247 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 306

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 307 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 366

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 367 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 426

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 427 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 486

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 487 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCL 546

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 547 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGVDQSYCILIADPK-TEVGK 605

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H
Sbjct: 606 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVH 665

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 666 MIFEEDMLENKNYEKLVALL 685


>gi|261363938|ref|ZP_05976821.1| ATP-dependent DNA helicase RecG [Neisseria mucosa ATCC 25996]
 gi|288567957|gb|EFC89517.1| ATP-dependent DNA helicase RecG [Neisseria mucosa ATCC 25996]
          Length = 680

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 239/666 (35%), Positives = 363/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + D +G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADDSGSVLFLRFIHFYASHQKQMAAGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
               S  +    +  +Y    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAESSGL-AESLTPIYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +      S    PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAAALGGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q +   +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G QA +MAP  ILA+QH+   K++ +   + V  ++G+  +  + +A  ++A G   I 
Sbjct: 308 SGAQAAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGTVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D +++  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I + P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDQLPPGRTPIKTRLVNNIRRAEVEGFVLNICRKGQQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A  E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFANLEEDLHLLEQAREIAPMLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|328911691|gb|AEB63287.1| branch migrating ATP-dependent DNA helicase involved in DNA
           recombination and repair [Bacillus amyloliquefaciens
           LL3]
          Length = 682

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 229/682 (33%), Positives = 369/682 (54%), Gaps = 23/682 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
              ++  +G+G +    L ++            DLL Y P  + D      + E+  E  
Sbjct: 6   QTSIAEIKGIGPETEKTLQEL------GIYDISDLLNYFPYRYDDY-ELRDLEEVKHEER 58

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTG 127
           VT+ G +    S     ++  ++      G   IT + F R    LK     G  +T++G
Sbjct: 59  VTVEGKVHSEPSLTYYGKKRNRLTFRVLVGNYLITAVCFNR--PYLKKKLTLGSVVTISG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLP 186
           K  K +  + +        N        IE VYS+   ++V + ++ I EAL   L  + 
Sbjct: 117 KWDKHRQTVSVQ----ELKNGPHQEDKSIEPVYSVKENVTVKMMRRFIKEALKHHLDNIA 172

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245
           + + + L      P   +A   +H P   +  +     R R  Y+E L  Q+ +   RK 
Sbjct: 173 DPLPEKLRISYKLPDYKQALQTMHQPETRESLQQA---RRRFVYEEFLLFQLKMQAFRKA 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + ++  GI      +       ++PFS T +Q   +++I  D++   RM R+LQGDVGSG
Sbjct: 230 EREQSKGISHVFPAEKLAAFTASLPFSLTNAQMRVLREITADLTSPYRMNRLLQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT VA IA+ AA+ +G Q  +M P  ILA+QH + +     N  + + ++T ++    RR
Sbjct: 290 KTAVAAIALYAAILSGYQGALMVPTEILAEQHADSLVSLFANEDVNIALLTSSVKGKRRR 349

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LER+A G+  I++GTHAL QD +++  L LVI DEQHRFGV QR KL  K   P VL 
Sbjct: 350 ELLERLALGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVDQRKKLRNKGQDPDVLF 409

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  G++D+S I E PAGRK I+T  +  + ++ ++  ++  L +G++A
Sbjct: 410 MTATPIPRTLAITVFGEMDVSVIDEMPAGRKQIETYWVKHDMLERILAFIEKELKQGRQA 469

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP IEE  + + ++ ++ +N L E +     + ++HG++   +K+ VM  F    C+
Sbjct: 470 YIICPLIEESDKLDVQNAIDVYNMLSEVYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQ 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTV+EVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG+  S CIL+  P  S+ 
Sbjct: 530 VLVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGDHQSFCILMADPK-SET 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGF ++E+DL+ R  G+  G KQSGMP+F +A        LE AR+DA
Sbjct: 589 GKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRALETARQDA 648

Query: 664 KHILTQDPDLTSVRGQSIRILL 685
            ++++ +        + +R  L
Sbjct: 649 ANLVSSEAFWKDDEYRMLRAQL 670


>gi|50914858|ref|YP_060830.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS10394]
 gi|50903932|gb|AAT87647.1| ATP-dependent DNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 671

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 241/672 (35%), Positives = 375/672 (55%), Gaps = 30/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D      + ++ +  
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDF-KSKSVFDLVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 56  KAVITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQ--PYLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK    K+ I  +    +    +D     ++ VY +  G+S     K I  A      L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDD----MQPVYRVAQGISQSTLIKAIKSAFEIDAHLE 166

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + + E   +PI       +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDVG
Sbjct: 224 AENRSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++      + + I+T  M  A 
Sbjct: 284 SGKTVIASLSMYAAYTAGFQSALMVPTEILAEQHYISLQELF--PDLSIAILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPDL 673
            +  I++ DP+ 
Sbjct: 641 VSAAIVS-DPNW 651


>gi|290473314|ref|YP_003466180.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Xenorhabdus bovienii SS-2004]
 gi|289172613|emb|CBJ79382.1| DNA helicase, ATP-dependent resolution of Holliday junctions,
           branch migration [Xenorhabdus bovienii SS-2004]
          Length = 693

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 247/707 (34%), Positives = 388/707 (54%), Gaps = 28/707 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL+T RGVG      L+K+      +    +         + D+     
Sbjct: 1   MKGRLLDAI--PLTTLRGVGASQVTKLAKLGLVNLQDLLLHLP------LRYEDQTRLYS 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+TG + + +     +RR     ++DGTG +TL FF   T  +KN   EG
Sbjct: 53  INDLLPGVYATVTGEVLR-THVTFGRRRIMTCQISDGTGVLTLRFFNF-TAAMKNNLAEG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + +   G+I++      ++HP Y      +       +  +Y    G+     +K+I +A
Sbjct: 111 KHVIAYGEIRRGNQGPEIIHPEYKTQQHAERIQLQDTLTPIYPTTEGVRQTTLRKLIEQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDE 232
           L  L   V+ E + ++    +   S+  A + +H P              PA+ RL  +E
Sbjct: 171 LELLDTCVINELLPEEF--SRKLISLPNALHTLHRPPPDVSLTDLDNRRHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++     +  +  + Q+++  +PF PT +Q   + +I QD+ +  
Sbjct: 229 LLAHHLSMLAVRAGAQRFHAQQLTADNSLKQQLISQLPFVPTGAQVRVVAEIEQDLEKNV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   I V
Sbjct: 289 PMMRLIQGDVGSGKTLVAALAALRALVHGKQVALMAPTELLAEQHANTFRQWFEPLGIQV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA+GQ  +++GTHA+FQ+ +++  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIANGQVSMVVGTHAMFQEQVRFSGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R 
Sbjct: 409 ALWEKGCEQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDTRR 468

Query: 469 DEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMS 526
           +E+I+R+K   L EG++AYW+C  IE+ +    ++       L        I ++HGRM 
Sbjct: 469 NEIIQRIKSACLDEGRQAYWVCTLIEDSEVLEAQAAQATSEELALILPDLKIGLVHGRMK 528

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+++MD+FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG
Sbjct: 529 PAEKQTIMDAFKRGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRG 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C+LLY  PL+  +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F I
Sbjct: 589 AVASHCVLLYKTPLTNTAKIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFRI 648

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           A       +L   ++ + +I    P+    +    R L    QY+ A
Sbjct: 649 ADLLRDQGMLSEVQRISSYIHQHYPE--HAKALIERWLPDRSQYSHA 693


>gi|308173550|ref|YP_003920255.1| branch migrating ATP-dependent DNA helicase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606414|emb|CBI42785.1| branch migrating ATP-dependent DNA helicase involved in DNA
           recombination and repair [Bacillus amyloliquefaciens DSM
           7]
          Length = 682

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 230/682 (33%), Positives = 369/682 (54%), Gaps = 23/682 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
              ++  +G+G +    L ++            DLL Y P  + D      + E+  E  
Sbjct: 6   QTSIAEIKGIGPETEKTLQEL------GIYDISDLLNYFPYRYDDY-ELRDLEEVKHEER 58

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTG 127
           VT+ G +    S     ++  ++      G   IT + F R    LK     G  +T++G
Sbjct: 59  VTVEGKVHSEPSLTYYGKKRNRLTFRVLVGNYLITAVCFNR--PYLKKKLTLGSVVTISG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLP 186
           K  K +  I +        N        IE VYS+   ++V + ++ I EAL   L  + 
Sbjct: 117 KWDKHRQTISVQ----ELKNGPHQEDKSIEPVYSVKENVTVKMMRRFIKEALKHHLDNIA 172

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245
           + + + L      P   +A   +H P   +  +     R R  Y+E L  Q+ +   RK 
Sbjct: 173 DPLPEKLRISYKLPDYKQALQTMHQPETRESLQQA---RRRFVYEEFLLFQLKMQAFRKA 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + ++  GI      +       ++PFS T +Q   +++I  D++   RM R+LQGDVGSG
Sbjct: 230 EREQSKGISHVFPAEKLAAFTASLPFSLTNAQMRVLREITADLTSPYRMNRLLQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT VA IA+ AA+ +G Q  +M P  ILA+QH + +     N  + + ++T ++    RR
Sbjct: 290 KTAVAAIALYAAILSGYQGALMVPTEILAEQHADSLVSLFANEDVNIALLTSSVKGKRRR 349

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LER+A G+  I++GTHAL QD +++  L LVI DEQHRFGV QR KL  K   P VL 
Sbjct: 350 ELLERLALGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVDQRKKLRNKGQDPDVLF 409

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  G++D+S I E PAGRK I+T  +  + ++ ++  ++  L +G++A
Sbjct: 410 MTATPIPRTLAITVFGEMDVSVIDEMPAGRKQIETYWVKHDMLERILAFIEKELKQGRQA 469

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP IEE  + + ++ ++ +N L E +     + ++HG++   +K+ VM  F    C+
Sbjct: 470 YIICPLIEESDKLDVQNAIDVYNMLSEVYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQ 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTV+EVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG+  S CIL+  P  S+ 
Sbjct: 530 VLVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGDHQSFCILMADPK-SET 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGF ++E+DL+ R  G+  G KQSGMP+F +A        LE AR+DA
Sbjct: 589 GKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRALETARQDA 648

Query: 664 KHILTQDPDLTSVRGQSIRILL 685
            ++++ +        + +R  L
Sbjct: 649 ANLVSSEAFWKDDEYRMLRAQL 670


>gi|319745647|gb|EFV97947.1| DNA helicase RecG [Streptococcus agalactiae ATCC 13813]
          Length = 671

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 237/669 (35%), Positives = 371/669 (55%), Gaps = 29/669 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P+S  +G G K +    K+      +     DLL Y+P  + D      + ++ +  
Sbjct: 3   LQSPISNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDF-KSKSVFDLVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 56  KAVITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNISFFNQ--PYLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK    K+ I  +    +    +D     ++ VY +  G+S     K I  A      L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDD----MQPVYRVAQGISQSTLIKAIKSAFEINAHLE 166

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             E +   LL+K      + A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLEKYRLMGRSRACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E   +PI    +  +  + ++PF  T +Q+ ++ +IL DMS    M R+LQGDVG
Sbjct: 224 AENKSETNGLPILYSKRAMETKISSLPFILTNAQKRSLDEILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++      + + I+T  M  A 
Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELF--PDLSIAILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +   L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KLTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE AR+
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARR 640

Query: 662 DAKHILTQD 670
            A  I+  +
Sbjct: 641 VASDIVKDN 649


>gi|307709631|ref|ZP_07646083.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK564]
 gi|307619529|gb|EFN98653.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK564]
          Length = 671

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 239/687 (34%), Positives = 382/687 (55%), Gaps = 25/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GEI     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEIVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKYE 225

Query: 247 FKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + +  G+ ++   +    +  ++PF+ T++QE ++++IL DM     M R+LQGDVGSG
Sbjct: 226 NRVQGSGLVLDWSQEKVSAVKESLPFALTQAQEKSLQEILTDMKSDRHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA +AM AAV A  QA +M P  ILA+QH+E +K       + + ++TG++  A +R
Sbjct: 286 KTVVAGLAMFAAVTAVYQAALMVPTEILAEQHFESLKGLF--PDLKLALLTGSLKVAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE IA G+A +IIGTHAL QD + Y +L L+I+DEQHRFGV QR  L +K   P VL+
Sbjct: 344 EVLETIAKGEADLIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+  + +G +A
Sbjct: 404 MTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ +     L  HF     +A++HG+M   +K+ +M  FK     
Sbjct: 464 YVISPLIEESEALDLKNAIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKERKTD 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +
Sbjct: 524 ILVSTTVIEVGVNVPNATVMLIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK A
Sbjct: 583 GKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
            +I + +        + I + L   ++
Sbjct: 643 SYISSIEGWQEDPEWRMIALHLEKKEH 669


>gi|16803851|ref|NP_465336.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes EGD-e]
 gi|224501387|ref|ZP_03669694.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL R2-561]
 gi|16411265|emb|CAC99889.1| lmo1811 [Listeria monocytogenes EGD-e]
          Length = 682

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 237/680 (34%), Positives = 381/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKISVGETVTISGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
            K + ++           S++     +E VY L   L     +K    A       + E 
Sbjct: 119 DKSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P+  ++      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPGNLLEKYQLMDRLEAVRILHFPKNNEEL---KQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGVDQSYCILIADPK-TEVGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H
Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +   + +  LL
Sbjct: 651 MIFEEDMLENKNYEKLVALL 670


>gi|238854784|ref|ZP_04645114.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 269-3]
 gi|260664015|ref|ZP_05864868.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii SJ-7A-US]
 gi|282933862|ref|ZP_06339210.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 208-1]
 gi|313472296|ref|ZP_07812788.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 1153]
 gi|238832574|gb|EEQ24881.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 269-3]
 gi|239529856|gb|EEQ68857.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 1153]
 gi|260561901|gb|EEX27870.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii SJ-7A-US]
 gi|281301951|gb|EFA94205.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 208-1]
          Length = 674

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 215/672 (31%), Positives = 363/672 (54%), Gaps = 21/672 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            LN LF P++  +GVG K +  L  +            DLLFY P  + D      + ++
Sbjct: 1   MLNNLFEPVTKLKGVGPKTAAALESLS------IYSVYDLLFYFPYRYDDLEMI-PLDQL 53

Query: 65  SEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           ++ + V + G ++          K+      L      I + FF +    LKN    G++
Sbjct: 54  NDGQKVLLKGIVATEPFVSRFGYKKSRLSFKLRIDHDIIMVNFFNQ--PWLKNQLEVGKE 111

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           + V GK    K  +      ++   +++ +   +  VY +   +      ++I  AL++ 
Sbjct: 112 VAVYGKYNLAKQSLSGFK--FVAAKNEESS---LSPVYPVNRHIKQKKLVELIKLALAQK 166

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             L + + +++ QK    +  E    +H P+   +      A+    + E    QI L L
Sbjct: 167 NELMDIVPENIRQKYRLMNDQELVEKMHEPKSPNE---AKLAKRSAIFREFFIFQIQLAL 223

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +  + +  +G     +    +K+   +PF  +  Q+  + +I  D+ ++ +M R+LQGDV
Sbjct: 224 LTMRPQGRLGTAKKYDLNEIKKLTATLPFELSDDQKKVVNEIFADLHREKQMRRLLQGDV 283

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA+ A+ AA+ AG QA +M P  ILA QH+  I +  +   + + ++T +    
Sbjct: 284 GSGKTVVAVFAIYAAITAGYQAALMVPTEILANQHFGKIAELLRPFGVRIALLTSSTKAM 343

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R+    +A G  +++IGTHAL Q S+++  L LVI+DEQHRFGV QR KL  K   P 
Sbjct: 344 EKREIYRELADGTLNVVIGTHALIQPSLKFKNLGLVIIDEQHRFGVNQRQKLMIKGENPD 403

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L MTATPIPRTL LT+ G++D+S+I   PAGRKPI +  +    +D+V+ ++K  LS+G
Sbjct: 404 LLAMTATPIPRTLALTAYGEMDVSEIRHLPAGRKPIVSEWVTSTHLDQVLAKIKEQLSQG 463

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGT 541
            + Y + P IEE +  + ++  E    L  +F    + ++HG+MS  DK+ +M  F  G 
Sbjct: 464 FQIYVVTPLIEESENIDLKNAKELCLKLQSYFNHEKVVLLHGQMSGEDKDQIMTDFSEGN 523

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG   S C  +  P  +
Sbjct: 524 IDILVATSVIEVGVDVPNANMMVIFDADRFGLSQLHQLRGRIGRGRTESFCYFVADPK-T 582

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                R+ ++ +T +GF ++EEDLK R +G++ G  QSG+P+F +       + + +A+ 
Sbjct: 583 DIGKKRMEIISSTSNGFKLSEEDLKLRGQGDLFGKAQSGIPEFRLGDLVNDYNTMVVAQN 642

Query: 662 DAKHILTQDPDL 673
            A+ ++  DPDL
Sbjct: 643 VARQLVKADPDL 654


>gi|150019944|ref|YP_001305298.1| ATP-dependent DNA helicase RecG [Thermosipho melanesiensis BI429]
 gi|149792465|gb|ABR29913.1| ATP-dependent DNA helicase RecG [Thermosipho melanesiensis BI429]
          Length = 773

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/700 (35%), Positives = 386/700 (55%), Gaps = 26/700 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L   +   +GVG K +  L K+            DLL Y P  + DR     +  + 
Sbjct: 95  LKELDLSVKYLKGVGPKRAEKLMKL------GVKTVEDLLNYFPRDYEDRRKVMPLPILK 148

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE--GRKI 123
           E+  V  +G +S     +         +L+DG  +I L +F +  + + NV      +K+
Sbjct: 149 EDEKVVTSGVLSAVEKIKKSGLSIVSAVLSDGMYQILLKWFNQ--DYIGNVLKTLMRKKV 206

Query: 124 TVTGKIKK-LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
            V G +KK     + + +P      +   +   I  VYSL  G+  ++ ++II E L  +
Sbjct: 207 YVFGLVKKGFYGTLEIHNPEIEVIGN---SSREIMPVYSLTEGIKQNVIRRIIKENLYNI 263

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
               +++  +L  K+    + +A+  +H P           +R RLAY+E+L  Q+A  L
Sbjct: 264 YNFKDYLPDELKGKRRLLDVYQAYTGMHFPLS---MYHQKMSRFRLAYEEILYLQLAFFL 320

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +K+ +   GI  N EGK++ ++L+ +PF  T +Q +A ++I +D+     M R+LQGDV
Sbjct: 321 SKKENENIGGISKNFEGKLSSELLKQLPFKLTNAQLNAYEEIKKDLKSDKPMNRLLQGDV 380

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+V+ +A+    EAG Q+ +M P  ILA Q+++ + ++     I V ++ G     
Sbjct: 381 GSGKTIVSELAILDNYEAGFQSAVMVPTSILAIQNFKKMFEHLSRFGIRVALLLGATSTT 440

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            + +  + + +G   +++GTHAL Q+ + +  L LV++DEQHRFGV+QR +L  K     
Sbjct: 441 EKNRIKQMLKNGDLDVVVGTHALIQEDVHFKNLGLVVIDEQHRFGVRQRKELIAKGKLVD 500

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+MTATPIPRTL L+  GD+D+S I E P GRKPIKT ++   +IDEV + +   +  G
Sbjct: 501 TLVMTATPIPRTLSLSVYGDLDVSIIDEMPKGRKPIKTFVVHQTKIDEVYKFIISEVENG 560

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNG 540
            +AY + P I++ ++ + +S V     L E +   I  A+IHGRMSD +K+ +M  F  G
Sbjct: 561 GQAYIVYPLIDDSEKLSVKSAVSMHEKLREEYFKDISTALIHGRMSDFEKDEIMYKFSRG 620

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+LI+T+VIEVGIDV  A++I+IENAE FGLAQLHQLRGRVGRG + S C L     +
Sbjct: 621 EIKILISTSVIEVGIDVPQATVIVIENAERFGLAQLHQLRGRVGRGNKQSYCYLTVG-NV 679

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+ +  RL+   +T DGF I+E DLK R  GE LG+KQ G+P+F +A       ++ +AR
Sbjct: 680 SRETLERLNFFASTNDGFKISEYDLKLRGPGEFLGVKQHGLPEFKVADIINDIDIILMAR 739

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +DAK+I+       ++      I      Y E  +F+  G
Sbjct: 740 EDAKYIV------NNIEKFKTLIEYVKDIYKERLEFLDVG 773


>gi|257420441|ref|ZP_05597431.1| ATP-dependent DNA helicase recG [Enterococcus faecalis X98]
 gi|257162265|gb|EEU92225.1| ATP-dependent DNA helicase recG [Enterococcus faecalis X98]
 gi|315154698|gb|EFT98714.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0043]
          Length = 678

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 226/694 (32%), Positives = 373/694 (53%), Gaps = 30/694 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S   GVG K +  L ++            +LL Y+P  + D      +SEI ++  VT+
Sbjct: 7   VSVLPGVGPKRAENLQEL------GIATIEELLTYYPFRYDDIQE-KDLSEIQDQEKVTL 59

Query: 73  TGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G +   +       +  ++          I + FF +    LK+      +I V GK  
Sbjct: 60  KGLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQ--PFLKDKVVLSEEIAVYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWI 189
             +  +  +    +     + +F     +Y +   +      ++I  A      L  E +
Sbjct: 118 AKRKSLNGMK--ILASKGDNEDFA---PIYHVNKKVRQSTLVQLIRTAFEEYGSLVEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DLL+K       EA   +H P      E +  A+ R+ ++E    Q+ +  ++KQ K 
Sbjct: 173 PNDLLEKYRLMPRKEAMWAMHFPSNP---EESHQAKRRVVFEEFFLFQLKMQGLKKQEKA 229

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           E   + I  +    +   + +PF  T +Q+    +I +D+     M R+LQGDVGSGKT+
Sbjct: 230 EKNGLAIQYDVDRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A + AG Q  +M P  ILAQQH E +++     ++   ++TG+     RR  L
Sbjct: 290 VAAIALYATMTAGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +A+G+  I++GTHAL Q  + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 350 EELANGEIDIVVGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR PI+T  I   ++D V+E ++  L+ G +AY I
Sbjct: 410 TPIPRTLAITAYGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYII 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++  E F  +   ++    + ++HG+M + +K+ +M  FK+   +LL+
Sbjct: 470 CPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++    
Sbjct: 530 STTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPK-NEMGVE 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF+++E DL+ R  GE+ G +QSG+P+F +       ++LE+AR++A  +
Sbjct: 589 RMKIMTETTNGFVLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASAL 648

Query: 667 --LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             + +     + +G + R+       +EA QF  
Sbjct: 649 WKVKEWWQYPAYQGLANRVK----PQDEAAQFFD 678


>gi|88658514|ref|YP_506893.1| ATP-dependent DNA helicase RecG [Ehrlichia chaffeensis str.
           Arkansas]
 gi|88599971|gb|ABD45440.1| ATP-dependent DNA helicase RecG [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 679

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 275/684 (40%), Positives = 406/684 (59%), Gaps = 17/684 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +F+ +    GV       L K+         + IDLLF+ P S++DR     +SE S  +
Sbjct: 6   IFSSMYMLPGVNNVVGSLLKKL-----CGGDKIIDLLFHIPQSYVDRR--TALSEDSVGK 58

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           IVT  G +  H     +++  YKI+L+   GE++L+FF    + L++V   G    V+G 
Sbjct: 59  IVTFIGTVKCHGFIGRKRKSQYKIVLDTCIGEVSLIFFNYSLKYLRSVLKVGSTCVVSGT 118

Query: 129 IKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           + +    + + HP YI  +  +  +  +IE +Y L  GL+     K++  ++  LP  PE
Sbjct: 119 LIRFLGCLQITHPDYIVTDIKKFQDISIIEPIYPLIRGLTSKRISKLVKLSVRLLPDFPE 178

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
           WI++ LL+   + S  E+   IH+P      E     R RLAYDELL+ QI++ ++RK F
Sbjct: 179 WIDEKLLRDNRWNSWKESLIKIHHPDT---LEAVHLHRARLAYDELLSHQISVKMVRK-F 234

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             + G+ I  +      IL  +PF  T+ Q+  I  I +  + +NRM+++L GDVGSGKT
Sbjct: 235 DYQQGVSIVSKQLYYNDILNKLPFKLTEGQKEVISQITKSQASENRMVKLLIGDVGSGKT 294

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VAL A+   +E GGQ   MAP  ILA+QHY +I+    +  + VE++T  + +      
Sbjct: 295 VVALFAILNVIENGGQVAFMAPTEILAEQHYRWIRAILSDISVDVELLTSKVRKKQ--NI 352

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            +++  G+ +++IGTHALFQD + +  L L+I+DEQ RFGV QR++L  K+    VL MT
Sbjct: 353 KKKLQLGECNVVIGTHALFQDGVDFNNLNLIIIDEQQRFGVLQRMRLINKSNMADVLFMT 412

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL     GDID  ++ +KP  R PI+T I+ I R+ EVI +L++ L EG KAYW
Sbjct: 413 ATPIPRTLEQVVYGDIDCLRLKDKPHNRLPIQTSIVNIERLFEVIAKLQLALQEGNKAYW 472

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           ICP IE+ +  +  +  +RF +L E F   + +IH R+  I+K+ VM SF NG  KLL+A
Sbjct: 473 ICPYIEDSELLDIAAAEKRFFTLQEVFGKDVGLIHSRLPKIEKDEVMMSFYNGNIKLLVA 532

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG+D+ DA+IIIIENAE FGL+QLHQLRGRVGR ++ S CILL+   LSK +Y +
Sbjct: 533 TTVIEVGVDIPDATIIIIENAEQFGLSQLHQLRGRVGRSDKSSFCILLHGNMLSKIAYKK 592

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L +L+  +DGF IAE+DL  R  G++LGIKQSG+  F  A       L+ IA + A  IL
Sbjct: 593 LCILRKFQDGFYIAEQDLLLRGSGDVLGIKQSGLSNFKFADIYKDQGLISIAVEQAGAIL 652

Query: 668 TQDPDLTSVRGQSIRILLYLYQYN 691
             +    +  G     LL+++ Y+
Sbjct: 653 DAN---KTELGDHFNQLLHMFGYD 673


>gi|194334659|ref|YP_002016519.1| ATP-dependent DNA helicase RecG [Prosthecochloris aestuarii DSM
           271]
 gi|194312477|gb|ACF46872.1| ATP-dependent DNA helicase RecG [Prosthecochloris aestuarii DSM
           271]
          Length = 712

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 375/719 (52%), Gaps = 36/719 (5%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +N    PL+  +GVG + +  L               DL  Y P  ++DR     I  ++
Sbjct: 6   MNSDSTPLTFVKGVGPEKARVLE------AEGLGSVRDLYEYFPRRYLDRSRLKSIGSLA 59

Query: 66  EERIVTITGYISQ-HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           E  +VT+ G +S+         +  +++ L+DGTG + L +F R       +   G  + 
Sbjct: 60  EGELVTVVGTVSRAEKERSSSGKALFRVWLSDGTGNLVLTWF-RGAVYFSKMVRPGDLLA 118

Query: 125 VTGKIKKLKNRIIMVHPHYI-------------FHNSQDVNFPLIEAVYSLP-----TGL 166
           V GK+        M HP +                ++   +   I  +Y +       GL
Sbjct: 119 VHGKVGFFCGHAQMQHPDFDRLQDASAESGAKGVSDADLFHTGGIIPLYPVTDAMKKAGL 178

Query: 167 SVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225
                + II+ A+   P  + E +   ++       I  A+  IH P  ++  E      
Sbjct: 179 DSRRLRAIILRAMESHPAFIDEHLPDSIIASHGLLEINLAYRQIHCPVSSEMLERAVH-- 236

Query: 226 ERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
            R  ++EL   Q+   L    Q K    +     G     +   +PFS T +Q+ A+++I
Sbjct: 237 -RFKWNELFYAQLFFALRYHAQKKNNAAVRFERSGDKTALLYSLLPFSMTDAQKQAVREI 295

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
            +D+   ++M R+LQGDVGSGKTLVA+ +MA AV+ G QA IMAP  ILA QH+  I+KY
Sbjct: 296 YRDLRSGSQMNRLLQGDVGSGKTLVAMFSMALAVDNGLQAAIMAPTEILAFQHWLGIRKY 355

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
            +   + V ++TG+  +  R   L  +  G   + +GTHA+ ++ +++ +L L+I+DEQH
Sbjct: 356 CEPLGLRVGLLTGSQKKKERDVILSGLEDGSYDLAVGTHAMIEERVRFKRLGLIIIDEQH 415

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           RFGV QR  L  K+  PHVLLMTATPIPRTL + + GD+D++ I E P GRK I T +  
Sbjct: 416 RFGVLQRKALQDKSVNPHVLLMTATPIPRTLCMGAFGDLDVTLIDELPGGRKAIVTRLCH 475

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIH 522
            N    V+E ++  ++ G++AY + P ++E ++ + ++  + +  L +       I ++H
Sbjct: 476 ENSKPRVLELIRKEVAAGRQAYIVYPLVDESEKIDLKAATDSYLQLQKDLLPELRIGLVH 535

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GRM   +KE +MD F+ G   +L+ TTVIEVG+DV +A++++IE+AE FGLAQLHQLRGR
Sbjct: 536 GRMKPAEKELIMDRFRQGDVDVLVGTTVIEVGVDVPNATVMVIEHAERFGLAQLHQLRGR 595

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM- 641
           VGRG E S C LLY   L  ++  RL  ++ + DGF ++E D + R  G +LG +QSGM 
Sbjct: 596 VGRGPEQSYCYLLYS-RLGGDAAERLRAMEASTDGFRLSEIDARIRGTGNVLGKEQSGMV 654

Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             F +A       +L++AR  A  ++  DP L +   + IR   Y   Y+E F     G
Sbjct: 655 SGFSMADLNRDSEILDVARDAAFRLVDDDPQLRNPLHRGIR-NYYTTHYHEKFSLADIG 712


>gi|148239657|ref|YP_001225044.1| ATP-dependent DNA helicase [Synechococcus sp. WH 7803]
 gi|147848196|emb|CAK23747.1| ATP-dependent DNA helicase [Synechococcus sp. WH 7803]
          Length = 843

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 240/704 (34%), Positives = 375/704 (53%), Gaps = 33/704 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L APLS  RG+G K +  L+ +            DLL ++P  ++D     +I  +    
Sbjct: 144 LDAPLSRVRGIGPKQAERLASL------GLLVVRDLLLHYPRDYVDYSALRRIEALVPGE 197

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFF-----YRKTEMLK---NVF 117
             TI   + +   F   +     I+   L D TG I +  F     +     L     ++
Sbjct: 198 TATIVATVRRCHGFTSPRNPNLSIIELQLQDPTGRIKVSRFLAGRRFSNPSYLHGQTRLY 257

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-----NFPLIEAVYSLPTGLSVDLFK 172
             G  + V+G +K          P      S            +  VYSL  GL+ D F+
Sbjct: 258 PNGATVAVSGLVKDGPYGRSFQDPLIEVMESPQAPLQSKRIGRLLPVYSLTEGLTADRFR 317

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            ++   L  + + PE +     Q +      +A   IH P  +   E    AR RL +DE
Sbjct: 318 SLVEATLPSIRLWPEPLPAQRRQARQLLHRHQAMTAIHRPESS---EQLQQARHRLVFDE 374

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKI---AQKILRNIPFSPTKSQESAIKDILQDMS 289
            L  Q+ L+  R   ++     + +         + L N+PF  T +Q   + +I  D+ 
Sbjct: 375 FLLLQLGLMQRRAALRQRTAPSLKITSDRDGLLSRFLNNLPFQFTNAQTRVLAEIDADLE 434

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           +   M R++QGDVGSGKT+VA+ A+  A++AG Q  +MAP  +LA+QHY  + ++     
Sbjct: 435 RSEPMARLVQGDVGSGKTVVAVAALLKAIQAGLQGAMMAPTEVLAEQHYRSLCQWLPPLH 494

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + VE++TG+ P   RR+ L  +A G   +++GTHAL +D + + +L LV+VDEQHRFGV+
Sbjct: 495 VTVELLTGSTPLKKRRRLLADVASGACKVLVGTHALLEDPVAFERLGLVVVDEQHRFGVR 554

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI T ++  +  D
Sbjct: 555 QRNRLLGKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIMTTMLAGSERD 614

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSD 527
           +    ++  + +G++AY + P +EE ++ + RS V+    L +       + ++HGR+  
Sbjct: 615 QAYSLIREEVEKGQRAYVVLPLVEESEKMDLRSAVDVHRQLEDEVFPDLKVGLLHGRLPS 674

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
           +DK++V+ +F  G  ++L++TTV+EVG+DV +AS+++I++A+ FGLAQLHQLRGRVGRG 
Sbjct: 675 VDKQAVIQAFAKGETQVLVSTTVVEVGVDVPEASVMMIDHADRFGLAQLHQLRGRVGRGA 734

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C LL +   +  +  RL VL  + DGF IAE DL+ R  G++LG +QSG+P   +A
Sbjct: 735 AASRC-LLINDSRNPLARQRLEVLVRSTDGFEIAEMDLRLRGPGQVLGTRQSGLPDLALA 793

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
                 S+LE AR++A  IL  DPDL  +    +R LL   +  
Sbjct: 794 SLADDGSVLEEAREEAADILRNDPDL--IDHSVLRSLLDAQRNR 835


>gi|206561640|ref|YP_002232405.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia J2315]
 gi|198037682|emb|CAR53625.1| putative ATP-dependent DNA helicase [Burkholderia cenocepacia
           J2315]
          Length = 743

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 246/696 (35%), Positives = 377/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      I E+    I    G +   + 
Sbjct: 59  KTADKLAKL------GLTRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFD-NE 111

Query: 82  FQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + + D  GE + L F       +K +   G+++ V G ++     + MVH
Sbjct: 112 VAYRPRRQLVVKIRDDDGEQLVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGMEMVH 170

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P      +      ++  VY    G+S    +K I  A+ R P LPE +  ++    L+ 
Sbjct: 171 PAVRVVEADAPLPQVLTPVYPSTAGVSQAYLRKAIENAVERTP-LPELLPPEIQRDYLKP 229

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P++ +A  I+H+PR   D     + + PA  R+ ++ELLA Q++L    ++ +    
Sbjct: 230 LDVPTLEQAVRILHHPRVDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAA 289

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +             ++   +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT
Sbjct: 290 PAMPRRTARDADALTTRLYAALPFTLTGAQARVVDEIAHDLTLAHPMQRLLQGDVGSGKT 349

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A   A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 350 VVAALAATQAIDAGYQAALMAPTEILAEQHARKLRAWLEPLGVTVAWLAGSLKAKEKRAA 409

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           +E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 410 IEAAALGTAQLVIGTHAIIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARD 469

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+++S I E P GR P+ T ++   R DEVI R++  
Sbjct: 470 FQPHQLMMSATPIPRTLAMTYYADLEVSTIDELPPGRTPVLTRVVGDARRDEVIARVREA 529

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR+S  DK +VM++F
Sbjct: 530 ALTGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMEAF 589

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 590 TRNEVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYS 649

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L++
Sbjct: 650 GPLSLTGRERLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLID 709

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR+ A  ++   P++ +      R L    QY +A
Sbjct: 710 PAREAAARLIAAYPEVVTQ--HLARWLGAREQYLKA 743


>gi|325957104|ref|YP_004292516.1| ATP-dependent DNA helicase RecG [Lactobacillus acidophilus 30SC]
 gi|325333669|gb|ADZ07577.1| ATP-dependent DNA helicase RecG [Lactobacillus acidophilus 30SC]
          Length = 678

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 218/683 (31%), Positives = 364/683 (53%), Gaps = 22/683 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +  L      G+       DLLFY P  + D      + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTAADL------GSLGIYSIYDLLFYFPFRY-DELQTLPLDQIMD 56

Query: 67  ERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            + V + G ++          K+      +      + + FF +    LK+    G+++ 
Sbjct: 57  GQKVMLKGIVATEPFVSGFGYKKSRLSFKIRIDHDIVMVNFFNQ--PWLKSKIEIGQEVA 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           + GK    +  +      + F  +++ N   +  +Y +   +       +I  A+   L 
Sbjct: 115 IYGKYNVARQSLSA----FKFVAAKE-NDSGMAPIYPVNRHVKQKKLINLINLAIDSFLD 169

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + + K++++K       E    +H+P+   D E     +    + E    ++ L L+
Sbjct: 170 QVQDIVPKEIMEKYRLLHDQEIIQKMHHPKNGHDAELA---KRSAIFREFFIFELQLALL 226

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
                K+ G P   + K    + +++PF  +  Q+  + +I  DM    +M R+LQGDVG
Sbjct: 227 ANHDGKQQGYPKKYDLKEIANLTKSLPFELSDDQKKVVNEIFADMHSDGQMRRLLQGDVG 286

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   + V ++TGN     
Sbjct: 287 SGKTVVAVYAIFAAISAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKTLE 346

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+    +  G  + +IGTHAL Q ++ + KL LVI+DEQHRFGV QR  L  K   P +
Sbjct: 347 RREIYRELTDGTINAVIGTHALIQKNVIFKKLGLVIIDEQHRFGVGQRQALINKGDNPDI 406

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +     +++ +V + +   L +G 
Sbjct: 407 LAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISAWKTSSQMKDVYKLMYEQLDQGF 466

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I E +  + ++  E    L   F   ++ ++HG+M    K+ +M +F +G  
Sbjct: 467 QIYAVTPLITESETLDLKNAEELHEKLSHDFPDQNVVLLHGQMPGAKKDEIMSAFASGEI 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S CI +  P  + 
Sbjct: 527 NILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCIFIADPK-TD 585

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +   R+ ++  T +GF +AEEDLK R EG++ G  QSG+P+F +     + + L +A+K 
Sbjct: 586 SGKARMKIIAATNNGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVAQKV 645

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
           A+ ++  DP+LTS    S++ +L
Sbjct: 646 ARELVKADPELTSPEHNSLKQVL 668


>gi|34540181|ref|NP_904660.1| ATP-dependent DNA helicase RecG [Porphyromonas gingivalis W83]
 gi|34396493|gb|AAQ65559.1| ATP-dependent DNA helicase RecG [Porphyromonas gingivalis W83]
          Length = 698

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 236/693 (34%), Positives = 379/693 (54%), Gaps = 22/693 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++ L   ++   GVG K +  L + I         ++DLL Y P  ++DR     I EI 
Sbjct: 1   MDILSTKITYLTGVGPKRAEVLKEEIE-----VRTYLDLLHYFPFRYVDRSRFYAIREIR 55

Query: 66  EER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            +   + + G +   S     +R+      +DGTG I L++F +  + +++   EGR+  
Sbjct: 56  SDMPYIQLRGVLRNFSEVGEGRRKRLTATFSDGTGSIELVWF-KGIKYIRDKLQEGRRYI 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEAL 179
           V GK     +   + HP        +     +  +Y         GL     ++++   L
Sbjct: 115 VFGKPVFFASGYNIAHPEIDAEEKAEQVAGGLTPIYHTTERMKSMGLGSKQLQQLLYVLL 174

Query: 180 SRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           +++   L E +   +L    F S  EA   IH P+     E     R RL ++EL   Q+
Sbjct: 175 NQVSATLTETLPPYILSSYGFVSYQEAIRQIHFPQGVAQLEAA---RTRLKFEELFYVQL 231

Query: 239 ALLLMRKQFK-KEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            L+  + + K +  GI     G +       ++PF  T +Q+  I++I QD    ++M R
Sbjct: 232 HLIGSKLERKARFQGIVFAQVGALFNTFYKEHLPFELTGAQKRVIREIRQDTLSGHQMNR 291

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVAL++M  A++ G QA +MAP  ILA+QH+  + +  +   I V ++ 
Sbjct: 292 LVQGDVGSGKTLVALLSMLLALDNGCQACLMAPTEILARQHHHTLSELLRPLGIEVGLLI 351

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+     R + L R+A G   I++GTHAL +  + + +L + ++DEQHRFGVQQR +L +
Sbjct: 352 GSCTARQRERLLPRLADGSLSIVVGTHALLEQGVAFRRLGMAVIDEQHRFGVQQRARLWE 411

Query: 417 KA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
           K   T PH+L+M+ATPIPRTL +T  GD+DIS I E P GRKPI+T+    N +  V   
Sbjct: 412 KNLDTLPHILIMSATPIPRTLAMTLYGDLDISIIDELPPGRKPIQTLHHFDNDMAPVFRF 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESV 533
           L+  L+ G++ Y + P IE  + ++ +++ + F      F    + ++HG+M   +KE+ 
Sbjct: 472 LRSQLAAGRQVYVVYPMIEGSETTDLKNLEDGFELFSSIFPDEGVTMVHGKMKAKEKEAR 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++L+ATTVIEVG++V +A+++++ENA+ FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MADFVSGRSRILLATTVIEVGVNVPNATVMVVENADRFGLSQLHQLRGRVGRGGEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELH 652
           L+      ++S  R+ V+  T DGF IAEED++ R  G++ G +QSG      IA P   
Sbjct: 592 LITGTKTGEDSRRRIQVMVETNDGFEIAEEDMRLRGFGDLEGTRQSGRQISLRIANPARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
             L+ ++R  A+ +L +DP+L     Q + + L
Sbjct: 652 TELIALSRSIAEQLLERDPELRHPDNQMLALRL 684


>gi|270159344|ref|ZP_06188000.1| ATP-dependent DNA helicase RecG [Legionella longbeachae D-4968]
 gi|289165836|ref|YP_003455974.1| ATP-dependent DNA helicase RecG [Legionella longbeachae NSW150]
 gi|269987683|gb|EEZ93938.1| ATP-dependent DNA helicase RecG [Legionella longbeachae D-4968]
 gi|288859009|emb|CBJ12937.1| ATP-dependent DNA helicase RecG [Legionella longbeachae NSW150]
          Length = 690

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 259/686 (37%), Positives = 383/686 (55%), Gaps = 26/686 (3%)

Query: 14  STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73
            +  G+G   +  L+K             DLLF+ P  + DR     + ++       I 
Sbjct: 7   ESLTGIGPTLAAKLAK------CGIHSVRDLLFHLPYRYQDRTRITPLQDLQPNTWCVIA 60

Query: 74  GYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
           G + + +  +  KR      + D TG I L FF+     +KN       I   G++++  
Sbjct: 61  GEVCK-TEIKPGKRAMLHCYVQDKTGVIKLQFFHFNKNQIKN-LNNSVMIHAFGEVREFN 118

Query: 134 NRIIMVHPHYIFHNSQDV--NFPLIEAVYSLPTGLSVDLFKKIIVEALS----RLPVLPE 187
           N   M HP Y     ++       +  +Y    GLS    +++++ AL      L  L E
Sbjct: 119 NTWTMTHPEYQLFEDENQCHVHETLTPIYPSTQGLSQTRLRQLVLVALKSSEHELQQL-E 177

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLM 243
           W+    L+  +F  + EA  ++HNP      +       PA +RLA+DELLA ++++   
Sbjct: 178 WMSDAELKANNFYHLGEAIRLLHNPPPDISLQALESGQHPALKRLAFDELLAQRLSMQFA 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+        P+  +  +  + L  +PF+ T++Q+   ++I  D+ QK  MLR++QGDVG
Sbjct: 238 RESRSTLHATPLPRDHHLNNRFLSALPFTLTQAQQRVAEEINLDLMQKKPMLRLVQGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT++A +A   A+  G Q   MAP  +L++QH     ++ +   I +  +TG M  + 
Sbjct: 298 AGKTIIAALAALQAIANGKQVAFMAPTDLLSEQHASNFMRWLEPLGIKILRLTGKMKASE 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           RR AL  +A     +IIGTHALFQ+++ +  L LVI+DEQHRFGV+QRL L QK      
Sbjct: 358 RRHALSALADNSCQLIIGTHALFQEAVHFSHLGLVIIDEQHRFGVEQRLLLQQKGQHEQR 417

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH LLMTATPIPRTL ++ L  +DIS I E P GR PI T ++  N+ + VIERL V L
Sbjct: 418 VPHQLLMTATPIPRTLSMSYLAHLDISIIDELPPGRIPITTAVLNQNKRETVIERLLVAL 477

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           S G++ YW+C  IEE ++    +  E  ++L E   +  I +IHGRM  ++KE+ M +FK
Sbjct: 478 STGRQIYWVCTLIEESEKLQCMAATETAHTLQEQLPAARIGLIHGRMKPLEKEATMAAFK 537

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           NG   LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+LLY  
Sbjct: 538 NGEINLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGNTQSHCLLLYQS 597

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS+ S  RL +++ T DGF+IAE+DL+ R  GEILG KQ+G  +F IA  +   SLL +
Sbjct: 598 PLSQQSTERLKIMRATNDGFIIAEKDLELRGAGEILGTKQTGYRQFKIANIQRDHSLLPL 657

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRIL 684
               A+ ++   P++   R  + R L
Sbjct: 658 LPSLAQKLIRHTPEIA--RDITQRWL 681


>gi|325917666|ref|ZP_08179860.1| ATP-dependent DNA helicase RecG [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536130|gb|EGD07932.1| ATP-dependent DNA helicase RecG [Xanthomonas vesicatoria ATCC
           35937]
          Length = 714

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 246/697 (35%), Positives = 379/697 (54%), Gaps = 33/697 (4%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           PS       PLS+  GVG K +   +              DL  + P  + DR     I+
Sbjct: 9   PSLAVAGQVPLSSLPGVGPKVADKFA------ARGILSVQDLWLHLPLRYEDRTRLTTIA 62

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGR 121
           ++       I G +        + R   ++ ++D + G + L FF+ +   +   F  G 
Sbjct: 63  QLQSGVPAQIEGRVEAVER-GFRFRPVLRVAISDDSHGSVVLRFFHFRAAQVAQ-FAVGT 120

Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEAL 179
           ++ V G  K  +N   +VHP Y +    +D +    ++ VY +  G+     +K+I +AL
Sbjct: 121 RVRVFGMPKPGQNGWEIVHPSYRVLAADEDADLGDCLDPVYPVLEGVGPATLRKLIGQAL 180

Query: 180 SRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDEL 233
            RLP     E +    LQ +  PS+  A   +H P    D         PA++RLA +EL
Sbjct: 181 ERLPPEAALELLPPHWLQDERLPSLRSALLTMHRPPVNTDPQQLLAGGHPAQQRLALEEL 240

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA Q++L   R   ++     +   G + +++   +PF  T +Q+   + I  D++Q + 
Sbjct: 241 LAHQLSLRRQRIALQRFHAPVLPGNGTLVRRLRAALPFQLTGAQQRVFEQIAHDLAQPSP 300

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + +   + + 
Sbjct: 301 MLRLVQGDVGSGKTVVAAMAAMLAVEQGKQVALAAPTELLAEQHLTNLRGWLEPLGVRIV 360

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    R  A+  +A GQA +++GTHAL Q+++ +  L L I+DEQHRFGV QRL 
Sbjct: 361 WLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQEAVVFRDLALAIIDEQHRFGVHQRLA 420

Query: 414 LTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L  K       PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+++   R  
Sbjct: 421 LRDKGAAAGSVPHQLVMTATPIPRTLAMSTYADLDVSAIDELPPGRTPVQTIVLSAERRP 480

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKES-----------NFRSVVERFNSLHEHFTS-S 517
           +++ER++   +EG++AYW+C  IEE ++              ++    F +L E      
Sbjct: 481 DLVERIRAACAEGRQAYWVCTLIEESEDPGKAAPAGPPRIEAQAAEVTFQALSEQLPGVR 540

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIENAE  GLAQLH
Sbjct: 541 VALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGLAQLH 600

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+ R  GE+LG +
Sbjct: 601 QLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLELRGPGELLGTR 660

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 661 QTGLASFRIADLARDAGLLPRVQVLAERLLAEAPEIA 697


>gi|240122804|ref|ZP_04735760.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID332]
 gi|268681416|ref|ZP_06148278.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID332]
 gi|268621700|gb|EEZ54100.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID332]
          Length = 680

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 239/668 (35%), Positives = 362/668 (54%), Gaps = 16/668 (2%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
             +  L K+      N     DL+ + P  + D  +   I +        + G +  H  
Sbjct: 15  ASAKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQE 67

Query: 82  FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
              + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP
Sbjct: 68  VTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHP 127

Query: 142 HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPS 201
                    +    +  VY    GL+    ++II  AL   P L + +   LL +   P 
Sbjct: 128 KIRDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPH 185

Query: 202 IAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
           +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  
Sbjct: 186 LAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAALRG 245

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +G + Q + + +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++   A
Sbjct: 246 DGTLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSALTA 305

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           +E+G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   
Sbjct: 306 IESGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKAKDEAKAKLADGSVK 365

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL +
Sbjct: 366 IAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAM 425

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE + 
Sbjct: 426 SFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESET 485

Query: 498 SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+D
Sbjct: 486 LQLQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVD 545

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    D
Sbjct: 546 VPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTD 605

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           GF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V
Sbjct: 606 GFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI--V 663

Query: 677 RGQSIRIL 684
                R L
Sbjct: 664 EAHLARWL 671


>gi|289435154|ref|YP_003465026.1| ATP-dependent DNA helicase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171398|emb|CBH27942.1| ATP-dependent DNA helicase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 682

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 233/680 (34%), Positives = 381/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +S ++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSLVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKINVGETVTISGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
            K + +I           +++     +E VY L   L     +K    A       + E 
Sbjct: 119 DKGRAQITASKVKIGAVENEEE----LEGVYRLKGTLRNKTMQKYTRAAFDAYSSSIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  ++H P+   +      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPTNLLEKYQLMDRLEAVRVLHFPKNNDEL---KQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF+ TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFALTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   + V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDVTVGLLTSSVKGKRRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSVDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVTQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    ++ VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLERVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYRPGLMHGKLLPADKEQIMRDFNDKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H
Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L + + + +  LL
Sbjct: 651 MIFEENMLENKQYEKLVALL 670


>gi|240112222|ref|ZP_04726712.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae MS11]
 gi|268598281|ref|ZP_06132448.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae MS11]
 gi|293397684|ref|ZP_06641890.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae F62]
 gi|268582412|gb|EEZ47088.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae MS11]
 gi|291611630|gb|EFF40699.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae F62]
          Length = 680

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 239/666 (35%), Positives = 362/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAALRGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + + +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|57238772|ref|YP_179908.1| ATP-dependent DNA helicase RecG [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578695|ref|YP_196907.1| ATP-dependent DNA helicase RecG [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58616758|ref|YP_195957.1| ATP-dependent DNA helicase RecG [Ehrlichia ruminantium str. Gardel]
 gi|57160851|emb|CAH57751.1| ATP-dependent DNA helicase RecG [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416370|emb|CAI27483.1| ATP-dependent DNA helicase RecG [Ehrlichia ruminantium str. Gardel]
 gi|58417321|emb|CAI26525.1| ATP-dependent DNA helicase RecG [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 677

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 280/687 (40%), Positives = 399/687 (58%), Gaps = 19/687 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+ +    G+       L K+         R IDLL + P S+IDR    ++SE S  +
Sbjct: 6   LFSSIYMLPGISSVIGGLLKKL-----CGGDRIIDLLLHIPQSYIDRR--TQLSEDSVGK 58

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           IVT  G +  H     + +  YK++L    GEI+L+FF    + LK++   G    ++G 
Sbjct: 59  IVTFVGIVKCHGFVGGRNKSQYKVILETNIGEISLIFFNYSLKYLKSILNVGSAYVISGT 118

Query: 129 IKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           + +    + ++HP YI  +  +  +  +IE VY L  GL+     K +   ++ LP  PE
Sbjct: 119 LIRFCGCLQIMHPDYIVRDIKKFQDISIIEPVYPLVKGLTSRKISKFVKLGINLLPDFPE 178

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
           WI+ +LL    + S  E+   IH P      E  S  R RL YDEL + QIA+ ++R Q 
Sbjct: 179 WIDDELLVSNQWYSFKESLIKIHYPDT---LETLSLYRTRLVYDELFSHQIAMKVIR-QS 234

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             + GI I  +      +L  +PF  T  QE  I +I      K RM+++L GDVGSGKT
Sbjct: 235 SCKEGISIVSKQIYYNHVLNKLPFKLTAGQEMVISEITHSQKSKQRMVKLLIGDVGSGKT 294

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VAL A+   VE GGQA +M P  ILA+QHY +I+    + +I VE++T  +      K 
Sbjct: 295 VVALFAILNVVENGGQAALMVPTEILAEQHYRWIQSILSDLKISVELLTSKVKGKKSIKK 354

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             ++  G+  ++IGTHALFQDS+ +Y L L+++DEQHRFGV QR+KL +K     VL MT
Sbjct: 355 KLQL--GECQVVIGTHALFQDSVNFYNLNLIVIDEQHRFGVLQRMKLIKKGNIADVLFMT 412

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL     GD+D  ++ +KP  R  I+T ++ I R+ EV+ +L + L EG KAYW
Sbjct: 413 ATPIPRTLEQVVYGDMDCLRLKDKPHNRLSIQTSLVNIERLSEVVSKLHIALEEGNKAYW 472

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           ICP IEE +  N  +  +RF +L + F   + +IH R+S I+K+ +M+SF NG  KLLIA
Sbjct: 473 ICPYIEESELLNIAAAEKRFFALKDIFNEKVGLIHSRLSKIEKDEIMNSFYNGDIKLLIA 532

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG+DV DA+IIIIENAE FGL+QLHQLRGRVGR  + S CILL+   LSK +Y +
Sbjct: 533 TTVIEVGVDVPDATIIIIENAEQFGLSQLHQLRGRVGRSNKPSFCILLHSKVLSKIAYKK 592

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L +L+  +DGF IAE+DL  R  G+ILGI+QSG+  F  A       L+ +A K A  I 
Sbjct: 593 LCILRQFQDGFYIAEQDLLLRGSGDILGIRQSGLSNFKFADIYRDYELISVANKYADKIY 652

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAF 694
            +         + +R LL ++ +N + 
Sbjct: 653 CE-----GELSEHLRQLLTIFGHNSSM 674


>gi|241895658|ref|ZP_04782954.1| ATP-dependent DNA helicase RecG [Weissella paramesenteroides ATCC
           33313]
 gi|241871025|gb|EER74776.1| ATP-dependent DNA helicase RecG [Weissella paramesenteroides ATCC
           33313]
          Length = 678

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 226/678 (33%), Positives = 372/678 (54%), Gaps = 30/678 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   +S   GVG K    L+K+            DLL Y+P  + D   +   SE  
Sbjct: 1   MPSLLDSISELSGVGPKREQALNKL------GVFTIDDLLTYYPRRYNDLAQKLP-SETL 53

Query: 66  EERIVTITGYISQHSSFQL----QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           +   VT  G ++           + R  +++ ++  T  I + FF +    L      G 
Sbjct: 54  DGEKVTFKGLVTSPPVVSRLGFKKTRLNFRLTVSHDT--IQISFFNQ--PWLSKNIVVGE 109

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           ++ + G   K    +  +      + ++      +EA+Y     +     K +I +AL +
Sbjct: 110 EVAIYGTYNKAHQSLSAIKMMPKNNENE------LEAIYPSSKEIKAGTIKDLIFQALGK 163

Query: 182 LPVL--PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
              L   E I  D+ ++    +  +    +H P           AR   ++ E    Q+ 
Sbjct: 164 YGDLLTQEIIPSDIRRRYRLMNYHDTVFGMHAPENEF---LAGEARRTASFMEFFVFQMR 220

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L ++++  +   G  +N + +  +  ++ +PF  T +Q+  + +I++DM +   M R+LQ
Sbjct: 221 LQVIKQMDRHNQGRSVNFDNQQLKSFIKVLPFELTAAQKKVVNEIVRDMRRPVHMNRLLQ 280

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA +AM AA+ AG QA +MAP  ILAQQH   I  Y   +++ VEI+TG  
Sbjct: 281 GDVGSGKTVVAALAMYAAITAGMQATLMAPTEILAQQHARTIGNYFDPSEVRVEILTGTT 340

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A RR+ L  +A G   I+IGTHAL Q  I ++ L L ++DEQHRFGVQQR  L +   
Sbjct: 341 KAAARRQILADLAEGDIDILIGTHALIQPDIAFHNLGLAVIDEQHRFGVQQRATLRKVGV 400

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P +L MTATPIPRTL +T+ G++D+S I + PAGRK IKT  +  N+I + I+ +K  L
Sbjct: 401 NPDILAMTATPIPRTLAITAYGEMDVSIIDQLPAGRKKIKTYWLRHNKIAKAIQFVKEQL 460

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSF 537
           + G +AY + P IEE +  + ++    +  L  +F    ++ ++HGR+S+ +K++VM +F
Sbjct: 461 ASGAQAYVVTPLIEESETLDVQNAQAVYEELSTYFAPKFNVGLLHGRLSNDEKDTVMTAF 520

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K    ++L+ATTVIEVG+DV +A++++I +A+ FGL+QLHQLRGRVGRGE  +   L+  
Sbjct: 521 KANEFQVLVATTVIEVGVDVPNATVMLILDADRFGLSQLHQLRGRVGRGERQAYTFLVSD 580

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           P  ++    R+  +  T DGF++A++DL+ R  G++LG +QSG+P+F +  P    +++ 
Sbjct: 581 PK-TQYGIDRMEAMVETTDGFVLAQKDLELRGAGDVLGNRQSGVPEFRVGDPIADLAMMN 639

Query: 658 IARKDAKHILTQDPDLTS 675
           +A+++A  I++Q PD   
Sbjct: 640 VAQEEAIEIVSQ-PDWDK 656


>gi|81428314|ref|YP_395314.1| ATP-dependent DNA helicase, RecG [Lactobacillus sakei subsp. sakei
           23K]
 gi|78609956|emb|CAI55003.1| ATP-dependent DNA helicase, RecG [Lactobacillus sakei subsp. sakei
           23K]
          Length = 680

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 225/692 (32%), Positives = 374/692 (54%), Gaps = 23/692 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   ++   GVG K    L+++            DLL+Y P  + D      +SE  
Sbjct: 1   MLSLTDSVTVLTGVGPKRLTALNQL------GIATISDLLYYFPFRYEDL-KVKDLSEAV 53

Query: 66  EERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           ++  VT+ G +            +    + L      I + FF +    LK+ F  G  I
Sbjct: 54  DQEKVTLKGTVVADPVVSRWGPGKTRLNVRLLINHDVIMVTFFNQ--PYLKDKFEAGVDI 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V GK    +N +  V         Q  + P   A+YS    +      K+I EA     
Sbjct: 112 AVYGKWDARRNSLTGV----KVLAVQSADNPSFAAIYSTNKNVRQGTLVKLIREAFDNYQ 167

Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            V+P+ I  D+ ++    S  E    +H P    +      AR    + E    Q+ L +
Sbjct: 168 SVIPDLIPADIRERYKLVSEVELIAGMHFPESYPE---AKQARRTAIFHEFFLYQLQLQV 224

Query: 243 MRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +++  +  E G+ +  +    ++ ++ +PF  T +Q+  + +I  D+     M R+LQGD
Sbjct: 225 IKQADRHVENGLALPYQNAALKEFIKTLPFDLTDAQKRVVNEICLDLKAPAHMNRLLQGD 284

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA IAM AAV AG QA +M P  ILA+QHY+ ++K      + V ++TG+   
Sbjct: 285 VGSGKTIVAAIAMFAAVTAGFQAALMVPTEILAEQHYQSLQKLYAPMNVTVGLLTGSTTA 344

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR  L  I  G+ +II+GTHAL QD++ Y+KL   ++DEQHRFGV QR  L +K   P
Sbjct: 345 KERRTLLADIESGRINIIVGTHALIQDAVVYHKLGFAVIDEQHRFGVNQRRVLREKGLQP 404

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L MTATPIPRTL +T+ G++D+S I E P GR PI+T  +  N++++ +  ++  L++
Sbjct: 405 DMLAMTATPIPRTLAITAYGEMDVSTIDELPKGRIPIETSWVRSNQVEQALSFVQKQLAD 464

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
             + + I P I E ++ + ++  E + +L E F     +A++HG++ D +K  +M +F N
Sbjct: 465 NSQVFAITPLIAESEQMDLKNAEEIYATLAERFEPQYHVALLHGKLKDDEKNRIMTAFSN 524

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              +LL++TTV+EVG+DV +A++++I +A+ FGLAQLHQLRGRVGRG++ + C+L+  P 
Sbjct: 525 NEIQLLVSTTVVEVGVDVPNATVMMIFDADRFGLAQLHQLRGRVGRGKKKAYCLLIADPK 584

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++    R++++  T +GF++A++DL+ R  GE+ G +QSG+P F +  P    + L++A
Sbjct: 585 -NQQGVDRMTIMTETTNGFVVAQKDLELRGPGEVFGDRQSGLPVFKVGDPVADFASLQVA 643

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           +++ + I T DP  +      ++  L   + N
Sbjct: 644 QQEVQKIFTVDPTFSQPAYAPLKAYLAQQKQN 675


>gi|119511272|ref|ZP_01630387.1| DNA helicase [Nodularia spumigena CCY9414]
 gi|119464063|gb|EAW44985.1| DNA helicase [Nodularia spumigena CCY9414]
          Length = 823

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 237/707 (33%), Positives = 387/707 (54%), Gaps = 36/707 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           LS    +G + +  L+ +      N     DLL+Y+P   ID   +  I E+     VTI
Sbjct: 130 LSDLPEIGPRQADKLAAL------NLLTVRDLLYYYPRDHIDYARQVNIGELQGGETVTI 183

Query: 73  TGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVFFEGR 121
              + + + F   K +   IL   L D TGEI +  F              LK  +  G 
Sbjct: 184 IANVKRCNCFTSPKNKKLSILELVLKDNTGEIKITRFSAGARFASRGWQEGLKRRYPVGS 243

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
            +   G +K+ K  + + +P              +    +  +Y+L  G+   + ++ I 
Sbjct: 244 ILAACGLVKESKYGLTLDNPELEVLAHPGDAIDSLTIGRVVPIYALTEGVMATMVRQAIT 303

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            AL     L + + K L  K +   + +A   IH P ++   +     R RL +DE    
Sbjct: 304 AALPATVHLKDPLPKGLRTKYNLMELKDAIANIHFPDESATLQAA---RRRLVFDEFFYL 360

Query: 237 QIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ LL  + Q ++     I   +G++ +K    +PF  T +Q+  + DIL D+ +   M 
Sbjct: 361 QLGLLQRQHQARQIQTSAILAPKGQLVEKFSEILPFELTGAQQRVLNDILTDLEKSTPMN 420

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA+IA+ AA+++G QA +MAP  +LA+QHY  +  +     + VE++
Sbjct: 421 RLIQGDVGSGKTVVAVIAILAAIQSGYQAALMAPTEVLAEQHYRKLVSWFNLLHLPVELL 480

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG+   A RR+   ++  G+  +++GTHAL QD++ + +L LV++DEQHRFGV+QR  L 
Sbjct: 481 TGSTKVAKRREIHSQLVTGELPLLVGTHALIQDTVNFNQLGLVVIDEQHRFGVKQRALLQ 540

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK   PHVL MTATPIPRTL LT  GD+++S+I E P GR+ I+T ++   +  E  + +
Sbjct: 541 QKGDQPHVLTMTATPIPRTLALTIHGDMNVSQIDELPPGRQKIQTTMLTGKQRTEAYDLM 600

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESV 533
           +  +++G++ Y + P +EE ++ + RS VE    L E       + ++HGRMS  DK+  
Sbjct: 601 RREIAQGRQVYIVLPLVEESEKLDLRSAVEEHQKLQESIFPDFQVGLLHGRMSSADKDEA 660

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F++   ++L++TTV+EVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   S C+
Sbjct: 661 ITKFRDNHTQILVSTTVVEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGAAQSYCL 720

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+     S ++  RL VL+ ++DGF I+E D++ R  GE+LG +QSG+  F +A     +
Sbjct: 721 LMSSSK-SADAQQRLKVLEQSQDGFFISEMDMRFRGPGEVLGTRQSGVADFTLASLVEDE 779

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            +L +AR+ A+ ++  D  L        R +L   +    ++ +  G
Sbjct: 780 EILLLARQVAEKVIEMDATLE-------RWVLMKAELKYRYERLMGG 819


>gi|71904171|ref|YP_280974.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS6180]
 gi|71803266|gb|AAX72619.1| ATP-dependent DNA helicase [Streptococcus pyogenes MGAS6180]
          Length = 671

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 241/672 (35%), Positives = 375/672 (55%), Gaps = 30/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D      + ++ +  
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDF-KSKSVFDLVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 56  KAVITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQ--PYLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK    K+ I  +    +    +D     ++ VY +  G+S     K I  A      L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDD----MQPVYRVAQGISQSTLIKAIKSAFEIDAHLE 166

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + + E   +PI       +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDVG
Sbjct: 224 AENRSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++      + + I+T  M  A 
Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELF--PDLSIAILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPDL 673
            +  I++ DP+ 
Sbjct: 641 VSAAIVS-DPNW 651


>gi|294506159|ref|YP_003570217.1| ATP-dependent DNA helicase RecG [Salinibacter ruber M8]
 gi|294342487|emb|CBH23265.1| ATP-dependent DNA helicase RecG [Salinibacter ruber M8]
          Length = 700

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 230/704 (32%), Positives = 377/704 (53%), Gaps = 21/704 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE- 67
           L   +   +GVG+K +      +           DLL ++P  ++DR     +  + E  
Sbjct: 6   LQQDVRYVKGVGEKRAD-----VWAEQHGVRTVHDLLRFYPRRYLDRTTVTPVRRLQEGP 60

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVT 126
             VT+ G +   +      ++  +I+L    G  +   +F +    ++  F EG ++   
Sbjct: 61  DSVTVVGTVRSVNVVPGNNQKRLEIILEGEQGGRMKGTWF-QGVWWVRKAFDEGDRVAFH 119

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPT-----GLSVDLFKKIIVEAL 179
           G ++K      M HP +   N +   ++   I  +Y         GL+    ++++ +  
Sbjct: 120 GTVEKYGRWHSMTHPDFDRLNDEGPLLDTGRIVPLYPGGEAMSNVGLTSRTVRRVLYDLF 179

Query: 180 SRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
               + L E +   ++          A   IH P+  ++    S A+ RL ++EL   Q+
Sbjct: 180 KEHGLKLTETMPDWIMDGYDLMEGRVALRAIHFPKTQQEL---SRAQRRLKFEELFFIQL 236

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            L  M +Q ++  G   +  G   ++ +   +PF  T +Q  A+++I+ D+    +M R+
Sbjct: 237 LLAQMHEQQEEVAGPAFDDPGAYTREFVREVLPFELTGAQTRALREIIGDVQTGTQMNRL 296

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VA+ AM  A ++G Q+  MAP  ILA+QH+  ++ Y Q   +   ++ G
Sbjct: 297 LQGDVGSGKTVVAVAAMMHAYDSGYQSAFMAPTEILAEQHHANLQDYLQPLGLEPRLLIG 356

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           +  +A R  AL+ +  G++ + +GTHAL QD + + +L L +VDEQHRFGV QR ++ +K
Sbjct: 357 SQTKAEREAALQAVRSGESPVAVGTHALIQDEVAFDRLGLAVVDEQHRFGVAQRAEMFEK 416

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH+LLMTATPIPR+L LT  GD+D+SKI E P GRKP++T +    R  EV   L  
Sbjct: 417 GERPHMLLMTATPIPRSLALTLYGDLDVSKIDEMPPGRKPVETRLRAEKRRGEVYAFLND 476

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L +G++A+ + P +EE ++ + +        L E F   ++ ++HG++S  DK++ M  
Sbjct: 477 RLEQGEQAFVVYPLVEESEKMDLKDAESGAQELQEKFPDYTVGLVHGQLSADDKDATMRR 536

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G   LL+ATTVIEVG+DV +A+++++E+AE FGL+QLHQLRGRVGR ++ S C+L+ 
Sbjct: 537 FKKGDIDLLVATTVIEVGVDVPNATVMLVEHAERFGLSQLHQLRGRVGRSDQQSYCVLMA 596

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
               S+ +  RL  +  T DGF I+E DL+ R  G+  G +QSGMP   IA     D +L
Sbjct: 597 SYKRSQEAKQRLEAMARTNDGFEISETDLQIRGAGDFFGTRQSGMPDLKIADLTEDDEIL 656

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           E+AR+ A  ++ +DP L +   + +R             F R G
Sbjct: 657 EVAREAAFALIEKDPHLRADEHERLRHRYQEDYAEHGLGFARVG 700


>gi|154686003|ref|YP_001421164.1| ATP-dependent DNA helicase RecG [Bacillus amyloliquefaciens FZB42]
 gi|154351854|gb|ABS73933.1| RecG [Bacillus amyloliquefaciens FZB42]
          Length = 682

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 229/682 (33%), Positives = 369/682 (54%), Gaps = 23/682 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
              ++  +G+G +    L ++            DLL Y P  + D      + E+  E  
Sbjct: 6   QTSIAEIKGIGPETEKTLHEL------GIYDISDLLNYFPYRYDDY-ELRDLEEVKHEER 58

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTG 127
           VT+ G +    S     ++  ++      G   IT + F R    LK     G  +T++G
Sbjct: 59  VTVEGKVHSEPSLTYYGKKRNRLTFRVLVGNYLITAVCFNR--PYLKKKLTLGSVVTISG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLP 186
           K  K +  + +        N        IE VYS+   ++V + ++ I EAL   L    
Sbjct: 117 KWDKHRQTVSVQ----ELKNGPHQEDKSIEPVYSVKENVTVKMMRRFIKEALQHHLDSAA 172

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245
           + + + L  +   P    A   +H P   +  +     R R  Y+E L  Q+ +   RK 
Sbjct: 173 DPLPEKLRIRYKLPDYKHALQTMHQPETRESLQQA---RRRFVYEEFLLFQLKMQAFRKA 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + ++  GI      +       ++PFS T +Q   +++I  DM+   RM R+LQGDVGSG
Sbjct: 230 EREQSKGISHVFPAEKLAAFTDSLPFSLTTAQTRVLREITADMTSPYRMNRLLQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT VA IA+ AA+ +G Q  +M P  ILA+QH + +     N  + + ++T ++    RR
Sbjct: 290 KTAVAAIALYAAILSGYQGALMVPTEILAEQHADSLVSLFANEDVNIALLTSSVKGKRRR 349

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LER+A G+  I++GTHAL QD +++  L LVI DEQHRFGV+QR KL  K   P VL 
Sbjct: 350 ELLERLALGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLKNKGQDPDVLF 409

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  G++D+S I E PAGRK I+T  +  + ++ ++  ++  L +G++A
Sbjct: 410 MTATPIPRTLAITVFGEMDVSVIDEMPAGRKQIETYWVKHDMLERILAFIEKELKQGRQA 469

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP IEE  + + ++ ++ +N L + +     + ++HG++   +K+ VM  F    C+
Sbjct: 470 YVICPLIEESDKLDVQNAIDVYNMLSDVYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQ 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTV+EVG++V +A+I++I +A+ FGL+QLHQLRGRVGRG+  S CIL+  P  S+ 
Sbjct: 530 VLVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGDHQSFCILMADPK-SET 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T DGF ++E+DL+ R  G+  G KQSGMP+F +A        LE AR+DA
Sbjct: 589 GKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRALETARQDA 648

Query: 664 KHILTQDPDLTSVRGQSIRILL 685
            ++++ +        + +R  L
Sbjct: 649 ANLVSSEAFWKDDEYRMLRGQL 670


>gi|259503534|ref|ZP_05746436.1| DNA helicase RecG [Lactobacillus antri DSM 16041]
 gi|259168612|gb|EEW53107.1| DNA helicase RecG [Lactobacillus antri DSM 16041]
          Length = 678

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 234/695 (33%), Positives = 362/695 (52%), Gaps = 22/695 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++  +GVG K +  L+ +            DLL Y+PS + D      +  + 
Sbjct: 1   MKSLQDPVAALKGVGPKRAADLATL------GIDTVEDLLTYYPSRYDDVT-PADLDNVQ 53

Query: 66  EERIVTITGYISQHSSFQ--LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           + + +T  G +           +R      L  G   I + FF +    L      G+ +
Sbjct: 54  DRQRITTQGTVVSEPLLSHFGYRRSRLSFRLQVGPRVIMVTFFNQ--AYLAKRVALGQTV 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           TV GK    + ++      ++   +QD       A+Y +   +     + +I +A     
Sbjct: 112 TVMGKWDAQRAQVTANK--FLAAGAQDSGDSG--AIYPVNKHIRQATLRGLIRQAFDEYQ 167

Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            V+P  +   L Q             +H P           AR   AY+E    Q+ L  
Sbjct: 168 NVIPTLLPAPLRQHYRLLDRRTMIKALHFPENVG---QAKAARRTAAYEEFFLFQLRLQA 224

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  +   G PI       +  +  I F  T +Q+  + +I +D+    +M R+LQGDV
Sbjct: 225 IRQARRHADGNPILYHNDELKNFIAGIGFELTGAQKRVVNEICRDLRAPYQMNRLLQGDV 284

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA IA+ A + AG QA +MAP  ILA QH E + +    T + V ++TG++   
Sbjct: 285 GSGKTIVAAIAIYATITAGYQAALMAPTEILAAQHAEKLARTFAGTHVHVGLLTGSLTAK 344

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
             R+ +  I  G+ +++IGTHAL QD ++Y  L LVI DEQHRFGV QR  L +K   P 
Sbjct: 345 QHRELVGAIKRGEINLVIGTHALIQDDVEYANLGLVITDEQHRFGVNQRQLLREKGDQPD 404

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL +T+ G++D+S I E PAGRKPI+T  + +N+  E +  L+  L+ G
Sbjct: 405 VLAMTATPIPRTLAITAYGEMDVSVIDELPAGRKPIETCWLKLNQQSEALHFLRDQLAGG 464

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540
            + Y + P IEE    + ++  + +N L E+F     + ++HGR+S  +K+ VM  F+ G
Sbjct: 465 AQVYIVSPLIEESAALDVQNATDLYNELAEYFQPRYQVGLLHGRLSAEEKDRVMHKFQQG 524

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LL++TTVIEVG+D  +A+++++ NA+ FGLAQLHQLRGRVGRG+  S C+LL  P  
Sbjct: 525 EYQLLVSTTVIEVGVDNPNATVMMVYNADRFGLAQLHQLRGRVGRGDRQSYCLLLADPK- 583

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +     R+  +  T DGF++A+ DL+ R  G++LG KQSGMP+F +  P     +L+IAR
Sbjct: 584 TDEGQERMKTMVETNDGFVVAQRDLELRGSGDVLGNKQSGMPEFKVGDPVGDLKMLQIAR 643

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           +DA  +L           Q + + L  +Q    F 
Sbjct: 644 QDATDLLRTPHWDEQDDNQPLVLYLQRHQLETHFD 678


>gi|319939812|ref|ZP_08014168.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus 1_2_62CV]
 gi|319811025|gb|EFW07340.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus 1_2_62CV]
          Length = 671

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 238/690 (34%), Positives = 384/690 (55%), Gaps = 31/690 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+   GVG K +   +K+            DLL Y P  + D      + E+ +  
Sbjct: 3   LHQPLTVLPGVGPKSAEKFTKL------GIESLQDLLLYFPFRYEDF-KSKNVIELEDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ++G +   ++ Q    KR   +  +      + + FF +    L +    G  I + 
Sbjct: 56  KAVVSGVVVTPANVQYYGYKRNRLRFTIKQDEVVLAINFFNQ--PYLADKVEVGSTIAIF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LPV 184
           GK  K K  +  +    I    +D     ++ VY +  G+S     K+I  A  +    +
Sbjct: 114 GKWDKAKASLTGMK---ILAQVEDD----LQPVYRVVQGISQASLVKVIKTAFDQGLELL 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL++       +A   +H P+   ++     A  R+ ++EL   Q+ L +++
Sbjct: 167 LEENLPQVLLERYQLLGRNQAVRAMHFPKNLTEY---KQALRRIKFEELFYFQMQLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K     + I  +  + +K    +PF  T +QE ++ +ILQDM     M R+LQGDVG
Sbjct: 224 HETKDASQGLIIPWQADLLEKKKATLPFELTAAQERSLNEILQDMKSPAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  A 
Sbjct: 284 SGKTVVAGLAMYATYTAGLQSALMVPTEILAEQHFDSLSQLF--PELRIILLTGGMKPAE 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ALE I  GQ  +I+GTHAL Q+ + Y++L LVI+DEQHRFGV QR  L +K   P V
Sbjct: 342 RRQALEAIEAGQVDMIVGTHALIQEGVTYHRLGLVIIDEQHRFGVGQRRILREKGNNPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ L+  L  G 
Sbjct: 402 LMMTATPIPRTLAITAFGDMDVSIINQMPAGRKPIITRWVKHEQLEIVLDWLRKELQRGA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ +     L  +F     +A++HG+M   +K+++M  FK G 
Sbjct: 462 QVYVISPLIEESEVLDLKNAIALEEELKAYFGDKTHVALLHGKMKSDEKDAIMQDFKEGK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  +
Sbjct: 522 TDILVSTTVIEVGVNVPNATVMLIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++   R+ ++  T DGF++AEEDLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 ESGKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
            A  I++  PD  +     I + L+L + +
Sbjct: 641 VASQIVST-PDWRTNADWHI-VALHLDKQD 668


>gi|302383040|ref|YP_003818863.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193668|gb|ADL01240.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 696

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 276/698 (39%), Positives = 407/698 (58%), Gaps = 16/698 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFA +S+ +GVG +    + K+            D+LF  P   I R     
Sbjct: 1   MRPQILFPLFAEVSSLKGVGPRTLPLVQKLAG------PLVRDVLFLAPVGVITRRR-TN 53

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
            ++  E  +      + +  +   +   P K+  +D TG + L++F    + +      G
Sbjct: 54  AADAIEGEVGVFDVVVDRMIAPG-RPGVPLKVRASDETGFVHLIWFGGSPQHIDRQLPRG 112

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            +  V+GK+++    + +VHP +I    +    P +E VY    GL+    +K+ + AL+
Sbjct: 113 ERRLVSGKVERFNGEVQIVHPDWIVPLDKGEEIPSVEPVYPATQGLASRNVRKLALGALA 172

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
             P   EW +   L ++ +P    A + +H P    D    SPARERLA+DELLA Q+AL
Sbjct: 173 VTPDPDEWQDAAWLARRRWPGWKAALDALHAPTGEADLSPDSPARERLAFDELLAHQLAL 232

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
              R+  +     P+  E   +  +L  +PFS T +Q  A+ +I +D++   +M R+LQG
Sbjct: 233 ARRRRARQITP-APVIRENAASAALLAALPFSLTGAQAQAMAEIRRDLASGEQMGRLLQG 291

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT VA +AMA A  AG QA +MAP  ILA+QH++ +    +   +   ++TG   
Sbjct: 292 DVGSGKTAVAALAMADAAGAGFQAALMAPTEILARQHFQRLAPMLEAAGLPTILLTGRDT 351

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            A RR  L  +A G+A I IGTHALFQD++++ +L L I+DEQHRFGV +R +L  KA  
Sbjct: 352 AAERRARLAALASGEARIAIGTHALFQDAVRFDRLALAIIDEQHRFGVNERARLQAKADP 411

Query: 421 P----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                H+L M+ATPIPRTL LT  G++++S++TEKP GR P+ T ++P+ RI EV  RLK
Sbjct: 412 RIGGVHLLTMSATPIPRTLELTQYGELEVSRLTEKPPGRTPVATAVLPLARIGEVAARLK 471

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             +  G +AYWICP + E + S+  +  ER   L       I + HG+M   ++E+VM  
Sbjct: 472 AAVETGAQAYWICPLVAESEASDLAAAEERARDLRRILNIEIGLAHGQMPGAEREAVMAD 531

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G   +L+ATTV+EVG+DV +A+I++IE+A+ FGLAQLHQLRGRVGRG + S+CILLY
Sbjct: 532 FADGRLPVLVATTVVEVGVDVPNATIMVIEHADRFGLAQLHQLRGRVGRGAKSSACILLY 591

Query: 597 ---HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
                 L + +  RL  L+ TEDGF IAEED + R  G+ LG++QSG P +  A P  H 
Sbjct: 592 GGQDGALGETARERLETLRRTEDGFEIAEEDFRLRGGGDPLGLRQSGFPAYRFADPIRHR 651

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           SL+  A  DA+ +L +DPDL S RGQ+I++L  L+ + 
Sbjct: 652 SLMLAASDDARMVLGRDPDLASPRGQAIQVLEALFDWR 689


>gi|188995477|ref|YP_001929729.1| ATP-dependent DNA helicase RecG [Porphyromonas gingivalis ATCC
           33277]
 gi|188595157|dbj|BAG34132.1| ATP-dependent DNA helicase RecG [Porphyromonas gingivalis ATCC
           33277]
          Length = 698

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 235/693 (33%), Positives = 380/693 (54%), Gaps = 22/693 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++ L   ++   GVG K +  L + I         ++DLL Y P  ++DR     I EI 
Sbjct: 1   MDILSTKITYLTGVGPKRAEVLKEEIE-----VRTYLDLLHYFPFRYVDRSRFYAIREIR 55

Query: 66  EER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            +   + + G +   S     +R+      +DGTG I L++F +  + +++   EGR+  
Sbjct: 56  SDMPYIQLRGVLRNFSEVGEGRRKRLTATFSDGTGSIELVWF-KGIKYIRDKLQEGRRYI 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEAL 179
           V GK     +   + HP        +     +  +Y         GL     ++++   L
Sbjct: 115 VFGKPVFFASGYNIAHPEIDAEEKAEQVAGGLTPIYHTTERMKSMGLGSKQLQQLLYVLL 174

Query: 180 SRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           +++   L E +   +L    F S  EA   IH P+     E     R RL ++EL   Q+
Sbjct: 175 NQVSATLTETLPPYILSSYGFVSYQEAIRQIHFPQGVAQLEAA---RTRLKFEELFYVQL 231

Query: 239 ALLLMRKQFK-KEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            L+  + + K +  GI     G +       ++PF  T +Q+  +++I QD    ++M R
Sbjct: 232 HLIGSKLERKARFQGIVFAQVGALFNTFYKEHLPFELTGAQKKVVREIRQDTLSGHQMNR 291

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++QGDVGSGKTLVAL++M  A++ G QA +MAP  ILA+QH+  + +  +   I V ++ 
Sbjct: 292 LVQGDVGSGKTLVALLSMLLALDNGCQACLMAPTEILARQHHHTLSELLRPLGIEVGLLI 351

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+     R + L R+A G   I++GTHAL +  + +++L + ++DEQHRFGVQQR +L +
Sbjct: 352 GSCTARQRERLLPRLADGSLSIVVGTHALLEQGVAFHRLGMAVIDEQHRFGVQQRARLWE 411

Query: 417 KA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
           K   T PH+L+M+ATPIPRTL +T  GD+DIS I E P GRKPI+T+    N +  V   
Sbjct: 412 KNLDTLPHILIMSATPIPRTLAMTLYGDLDISIIDELPPGRKPIQTLHHFDNDMAPVFRF 471

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESV 533
           L+  L+ G++ Y + P IE  + ++ +++ + F      F    + ++HG+M   +KE+ 
Sbjct: 472 LRSQLAAGRQVYVVYPMIEGSETTDLKNLEDGFELFSSIFPDEGVTMVHGKMKAKEKEAR 531

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +G  ++L+ATTVIEVG++V +A+++++ENA+ FGL+QLHQLRGRVGRG E S CI
Sbjct: 532 MADFVSGRSRILLATTVIEVGVNVPNATVMVVENADRFGLSQLHQLRGRVGRGGEQSYCI 591

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELH 652
           L+      ++S  R+ V+  T DGF IAEED++ R  G++ G +QSG      IA P   
Sbjct: 592 LITGTKTGEDSRRRIQVMVETNDGFEIAEEDMRLRGFGDLEGTRQSGRQISLRIANPARD 651

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
             L+ ++R  A+ +L +DP+L     Q + + L
Sbjct: 652 TELIALSRSIAEQLLERDPELRHPDNQMLALRL 684


>gi|300771630|ref|ZP_07081505.1| DNA helicase RecG [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761619|gb|EFK58440.1| DNA helicase RecG [Sphingobacterium spiritivorum ATCC 33861]
          Length = 701

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 237/692 (34%), Positives = 360/692 (52%), Gaps = 24/692 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG + +  L K +           DLL Y+P  +IDR    KI ++  + 
Sbjct: 6   LITPIEYLKGVGPQKADILKKELQ-----VFTIGDLLEYYPFRYIDRTQFHKIHKLHPDM 60

Query: 69  I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           I   + G +        ++ R       D +G I L++F +    LK     G    + G
Sbjct: 61  IGAQVLGRLVGLQEVGEKRGRRLVGQFRDDSGSIELVWF-QSIPWLKKSLKIGSPYILYG 119

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSV-----DLFKKIIVEALS 180
           K  +    I + HP    +N+Q+       ++ VYS    L          +++   AL 
Sbjct: 120 KPTEFNGHISITHPEMELYNAQEQKIGNQSLQPVYSSTEKLKKFNLDTRGIQRLQQTALE 179

Query: 181 R-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
                + + +   L+Q+       +A   IH P+  ++ +       RL ++EL   Q+ 
Sbjct: 180 TVYRSIGDMLPVYLIQEHRLIEYPKALLAIHFPKSQQELDQAI---RRLKFEELFFIQLR 236

Query: 240 LLLMRK-QFKKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           LL  ++    K  G   +  G+         +PF  T +Q+  IK+I QD +   +M R+
Sbjct: 237 LLNNKQLNTLKFKGHRFDQVGEKVNTFFNEKLPFPLTNAQKRVIKEIRQDTNTGAQMNRL 296

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VAL++M  A++ G QA +MAP  ILA QHY  + +        V ++TG
Sbjct: 297 VQGDVGSGKTVVALMSMLLAIDNGFQACMMAPTEILATQHYASVSELLGEGFAKVRLLTG 356

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQ 416
           + P   RR   + +  G   I+IGTHAL +D +++  +  V++DEQHRFGV+QR KL  +
Sbjct: 357 STPAKERRIIHQELEEGTLDILIGTHALIEDKVRFKNIGFVVIDEQHRFGVEQRAKLWRK 416

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH+L+MTATPIPRTL +T  GD+DIS I E PAGRKPIKTV    +    +   +K
Sbjct: 417 NVIPPHMLVMTATPIPRTLAMTMYGDLDISVIDELPAGRKPIKTVHFFESSRLRMFGFMK 476

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESV 533
             +++G++ Y + P I+E ++ +   +     +L   F      I+I+HG+M   DK+  
Sbjct: 477 EEIAKGRQVYVVFPLIKESEKLDLLYLEAGLENLQREFPLPQYKISIVHGKMPVKDKDFE 536

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F     ++++ATTVIEVG++V +AS+++IEN+E FGL+QLHQLRGRVGRG E S CI
Sbjct: 537 MQRFIKHETQIMVATTVIEVGVNVPNASVMVIENSERFGLSQLHQLRGRVGRGAEQSFCI 596

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+    LSK    RL  +  T DGF IAE DL+ R  G+I G +QSG+    IA      
Sbjct: 597 LMSGNKLSKEGRLRLETMVRTNDGFEIAEVDLQLRGPGDISGTQQSGVLDMKIANLASDQ 656

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           ++L  AR     I  +DP L S +   +   L
Sbjct: 657 AILSEARNAVISIFKEDPALQSEKNILLSAYL 688


>gi|172059700|ref|YP_001807352.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria MC40-6]
 gi|171992217|gb|ACB63136.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria MC40-6]
          Length = 792

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 246/696 (35%), Positives = 376/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      I E+    I    G +   + 
Sbjct: 108 KTADKLAKL------GLTRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFD-NE 160

Query: 82  FQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + + D  GE + L F       +K +   G+++ V G ++     + MVH
Sbjct: 161 VAYRPRRQLVVKIQDDDGEQLVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGMEMVH 219

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P      +      ++  VY    G+S    +K I  A+ R P LPE +  ++    L+ 
Sbjct: 220 PAVRVVEADAPLPQVLTPVYPSTAGVSQAYLRKAIENAVERTP-LPELLPPEIERDYLKP 278

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P++A+A  I+H+P    D     + + PA  R+ ++ELLA Q++L    ++ +    
Sbjct: 279 LGVPTLAQAVRILHHPGVDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAA 338

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +             ++   +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT
Sbjct: 339 PAMPRRAATDADALTTRLYAALPFTLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKT 398

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A   A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 399 VVAALAATQAIDAGYQAALMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAA 458

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           +E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 459 IEAAALGTAQLVIGTHAIIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARD 518

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+++S I E P GR P+ T ++   R +EVI R++  
Sbjct: 519 FQPHQLMMSATPIPRTLAMTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREA 578

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR+S  DK +VM++F
Sbjct: 579 ALTGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLSPGDKAAVMEAF 638

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 639 TRNEVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYT 698

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L++
Sbjct: 699 GPLSLTGRERLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLID 758

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   PD+ +      R L    QY +A
Sbjct: 759 PARDAAARLIAAYPDVVTQ--HLARWLGAREQYLKA 792


>gi|313676091|ref|YP_004054087.1| ATP-dependent DNA helicase recG [Marivirga tractuosa DSM 4126]
 gi|312942789|gb|ADR21979.1| ATP-dependent DNA helicase RecG [Marivirga tractuosa DSM 4126]
          Length = 697

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 240/686 (34%), Positives = 376/686 (54%), Gaps = 26/686 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI- 69
            P+   +G+G + +  ++K +         + DLL ++P  + DR    K+ E++ E   
Sbjct: 7   TPIEFLKGLGPQKAAHINKEL-----GIFTYADLLQHYPFRYEDRTKFYKVRELNAEMSN 61

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           V + G I         +++   +   D TG + L++F      +      G    V G+ 
Sbjct: 62  VQVKGQIRSKQLIGAGRKQRLAVQFADETGIMELVWF-SGINWISPKLRTGVDYVVYGQP 120

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLF---------KKIIVEALS 180
           K+  ++  M HP              ++ VYS    L              K ++ EA +
Sbjct: 121 KRFGSKYTMAHPELEILTPAVSQNEFLQPVYSTTETLRKRYLDSKAIFKFQKTLLKEAYN 180

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           R   +PE +   +LQ+  F +  +A   IH P+  +  +    AR R+ +DE    Q+ L
Sbjct: 181 R---IPETLPPHILQQYGFLAKRDAVVQIHVPKNQQLLQ---KARFRMKFDEFFFMQLRL 234

Query: 241 LLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L+ +K + +K  G  +     + +    ++PF  T +Q+  IK+I  D     +M R+LQ
Sbjct: 235 LMQKKVRLEKFKGQLLQKTDLLTEFYQSHLPFDLTGAQKKVIKEIFSDFKSGKQMNRLLQ 294

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA I+   A+++G Q  +MAP  ILA QHYE +K++     + + ++TG+ 
Sbjct: 295 GDVGSGKTIVAFISALIAIDSGAQVALMAPTQILANQHYEGLKEFADKIGVTIALLTGST 354

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               RR+  E +  G+  I++GTHAL ++ +Q+  L L IVDEQHR+GV QR +L +K  
Sbjct: 355 KTKARREIHENLKSGELKILVGTHALLEEVVQFQNLGLAIVDEQHRYGVAQRARLWKKNE 414

Query: 420 A--PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PHVL+MTATPIPRTL ++  GD+DIS I E P GRKPIKT+        ++   LK 
Sbjct: 415 NFVPHVLIMTATPIPRTLSMSVYGDLDISIIDELPKGRKPIKTIHQYDANRLKLNGFLKK 474

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            + +G++ Y + P IEE ++ + + +++ + S+   F    I+I+HG+M   DK+  M  
Sbjct: 475 EIEKGRQVYVVYPLIEESEKLDLKDLMDGYESIARSFPEYPISIVHGKMKAADKDFEMAR 534

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G  KL++ATTVIEVG++V +AS+++IENAE FGLAQLHQLRGRVGRG E S C+L+ 
Sbjct: 535 FVKGETKLMVATTVIEVGVNVPNASVMVIENAERFGLAQLHQLRGRVGRGAEQSYCVLVT 594

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
              LSK + TR+  +  T DGF IA+ D+  R  G+++G +QSG    LI      + +L
Sbjct: 595 SYKLSKEARTRVETMVRTTDGFEIAQVDMNLRGPGDMMGTQQSGQLDLLIGDLREDEPIL 654

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIR 682
            IAR+ A+ I+ +DP+L S     IR
Sbjct: 655 SIARQSAQAIIAKDPNLESEENALIR 680


>gi|15675625|ref|NP_269799.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes M1 GAS]
 gi|71911332|ref|YP_282882.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS5005]
 gi|13622833|gb|AAK34520.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes M1 GAS]
 gi|71854114|gb|AAZ52137.1| ATP-dependent DNA helicase [Streptococcus pyogenes MGAS5005]
          Length = 671

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 242/672 (36%), Positives = 376/672 (55%), Gaps = 30/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D      + ++ +  
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDF-KSKSVFDLVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 56  KAVITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQ--PYLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK    K+ I  +    +    +D     ++ VY +  G+S     K I  A      L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDD----MQPVYRVAQGISQSTLIKAIKSAFEIDAHLE 166

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E   +PI    +  +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDVG
Sbjct: 224 AENKSETNGLPILYSKRAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++      + + I+T  M  A 
Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELF--PDLSIAILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K+++M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPDL 673
            +  I++ DP+ 
Sbjct: 641 VSAAIVS-DPNW 651


>gi|227535922|ref|ZP_03965971.1| DNA helicase RecG [Sphingobacterium spiritivorum ATCC 33300]
 gi|227244165|gb|EEI94180.1| DNA helicase RecG [Sphingobacterium spiritivorum ATCC 33300]
          Length = 701

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 237/692 (34%), Positives = 359/692 (51%), Gaps = 24/692 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   +GVG + +  L K +           DLL Y+P  +IDR    KI ++  + 
Sbjct: 6   LITPIEYLKGVGPQKADILKKELQ-----VFTIGDLLEYYPFRYIDRTQFHKIHKLHPDM 60

Query: 69  I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           I   + G +        ++ R       D TG I L++F +    LK     G    + G
Sbjct: 61  IGAQVLGRLIGLQEVGEKRGRRLVGQFRDDTGSIELVWF-QSIPWLKKSLKIGSPYILYG 119

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSV-----DLFKKIIVEALS 180
           K  +    I + HP    +N+Q+       ++ VYS    L          +++   AL 
Sbjct: 120 KPTEFNGHISITHPEMELYNAQEQKIGNQSLQPVYSSTEKLKKFNLDTRGIQRLQQTALE 179

Query: 181 R-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
                + + +   L+Q+       +A   IH P+  ++ +       RL ++EL   Q+ 
Sbjct: 180 TVYRSIGDMLPPYLIQEHRLIDYPKALLAIHFPKSQQELDQAI---RRLKFEELFFIQLR 236

Query: 240 LLLMRK-QFKKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           LL  ++    K  G   +  G+         +PF  T +Q+  IK+I QD +   +M R+
Sbjct: 237 LLNNKQLNTLKFKGHRFDQVGEKVNTFFNEKLPFPLTNAQKRVIKEIRQDTNTGAQMNRL 296

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VAL++M  A++ G QA +MAP  ILA QHY  + +        V ++TG
Sbjct: 297 VQGDVGSGKTVVALMSMLLAIDNGFQACMMAPTEILATQHYASVSELLGEGFAKVRLLTG 356

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQ 416
           + P   RR   + +  G   I+IGTHAL +D +++  +  V++DEQHRFGV+QR KL  +
Sbjct: 357 STPAKERRIIHQELEEGTLDILIGTHALIEDKVRFKNIGFVVIDEQHRFGVEQRAKLWRK 416

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH+L+MTATPIPRTL +T  GD+DIS I E PAGRKPIKTV    +    +   +K
Sbjct: 417 NVIPPHMLVMTATPIPRTLAMTMYGDLDISVIDELPAGRKPIKTVHFFESSRLRMFGFMK 476

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESV 533
             +++G++ Y + P I+E ++ +   +     +L   F      I+I+HG+M   DK+  
Sbjct: 477 EEIAKGRQVYVVFPLIKESEKLDLLYLEAGLENLQREFPLPQYKISIVHGKMPVKDKDFE 536

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F     ++++ATTVIEVG++V +AS+++IEN+E FGL+QLHQLRGRVGRG E S CI
Sbjct: 537 MQRFIKHETQIMVATTVIEVGVNVPNASVMVIENSERFGLSQLHQLRGRVGRGAEQSFCI 596

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+    LSK    RL  +  T DGF IAE DL+ R  G+I G +QSG+    IA      
Sbjct: 597 LMSGNKLSKEGRLRLETMVRTNDGFEIAEVDLQLRGPGDISGTQQSGVLDMKIANLASDQ 656

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           ++L  AR     I  +DP L   +   +   L
Sbjct: 657 AILSEARNTVISIFKEDPALQLEKNILLSAYL 688


>gi|237749374|ref|ZP_04579854.1| ATP-dependent DNA helicase recG [Oxalobacter formigenes OXCC13]
 gi|229380736|gb|EEO30827.1| ATP-dependent DNA helicase recG [Oxalobacter formigenes OXCC13]
          Length = 680

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/679 (36%), Positives = 375/679 (55%), Gaps = 23/679 (3%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI--VTITGYISQHSSFQ 83
            L ++           ++L+ + PS + D      ++E    RI  +   G I+  S  Q
Sbjct: 8   KLERL------GIHTDMELVLHLPSRYEDETKLTSLAEAMFRRIGHIQTEGVIT-LSEIQ 60

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + RR   + L+DG  ++ L F +      K     G+++   G++++  N + MVHP Y
Sbjct: 61  YRPRRQLVVFLSDGANQLVLRFLHFYASQQKQ-LALGKRVRARGELRQGFNGMEMVHPVY 119

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
              +        +  VY    G+S +  +K I EAL R+  L + +   LL K   P   
Sbjct: 120 KIVDENTPLPDALTPVYPTSEGVSQNFLRKAINEALERID-LSDTLPDALLNKLDLPGFE 178

Query: 204 EAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           ++   +HNP    D     + T PA ER+ +DELLA Q+++   +   +++    +   G
Sbjct: 179 KSIRYLHNPPANADENALLDRTHPAWERMKFDELLAQQLSMRRAQIARRRQKSNVLKAPG 238

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + +  +R++PF+ T  QE  + +I +D+ +   M R+LQGDVGSGKT+VA IA   A++
Sbjct: 239 SLTKAFIRSLPFTLTDEQEKVVAEIREDLVKAWPMQRLLQGDVGSGKTVVAAIAACQAID 298

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G Q  +MAP  ILA+QH++ + ++     I V  + G+M +  + + L  I  G+A  I
Sbjct: 299 NGFQVAMMAPTEILAEQHFQRLNEWMAPLGISVVWLNGSMKKKAKEEVLSLIGSGEAQFI 358

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-----PHVLLMTATPIPRT 434
           +GTHAL Q+S+++  L L I+DEQHRFGV QRL L  K        PH L+M+ATPIPRT
Sbjct: 359 VGTHALIQESVRFANLGLAIIDEQHRFGVGQRLVLRNKGGNAESIIPHQLMMSATPIPRT 418

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I + P GRKP+ T +I   R DEVIER+      G++ YW+CP IEE
Sbjct: 419 LAMTFYADLDVSVIAKLPPGRKPVVTRLIDQKRRDEVIERIHAATLGGRQVYWVCPLIEE 478

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE    L E     S+ +IHGRM   +K++VM  F      +L+ATTVIEV
Sbjct: 479 SEALQLQTAVETHAILTEALNELSVGLIHGRMKAAEKQAVMTDFLEKRIHVLVATTVIEV 538

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS++IIE+AE FGL+QLHQLRGRVGRG   S C+L+Y  PL   +  RL  ++ 
Sbjct: 539 GVDVPNASLMIIEHAERFGLSQLHQLRGRVGRGSIDSVCLLMYQKPLGDTAKKRLMTMRE 598

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL-TQDPD 672
           T DGF+I++ DL+ R  GE LG +QSG      A  E    L+  A   A+ +L  + PD
Sbjct: 599 TNDGFVISQRDLEIRGPGEFLGARQSGQAMLRFADLEKDVDLIGKAASLAEDLLNGKLPD 658

Query: 673 LTSVRGQSI-RILLYLYQY 690
             ++  + + R L Y  +Y
Sbjct: 659 SDTIMSKHLARWLDYREEY 677


>gi|284037365|ref|YP_003387295.1| ATP-dependent DNA helicase RecG [Spirosoma linguale DSM 74]
 gi|283816658|gb|ADB38496.1| ATP-dependent DNA helicase RecG [Spirosoma linguale DSM 74]
          Length = 702

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 234/687 (34%), Positives = 366/687 (53%), Gaps = 22/687 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
              PL+  +G+G + +  L+K +     N   + DL+ Y+P  + DR     ISE+ +  
Sbjct: 8   FDTPLAYLKGLGPQRTELLNKEL-----NLFTYGDLIQYYPFRYDDRSRYYTISELMDSM 62

Query: 69  I-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
               I G +          ++      +DGTG ++L++F +    ++       +    G
Sbjct: 63  PSAQIRGRLRDWYLEGEGPKKRLVATFSDGTGSMSLVWF-QGITFIEKTLRREGEYIAYG 121

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-----VDLFKKIIVEALSR- 181
           K +    +  +VHP     N+   N P    VY+L   L        +  K +   L + 
Sbjct: 122 KPQSFNGQFSIVHPELENANAASENEPGFFPVYNLTDKLRKRHLDSKVLGKAMRVLLEQS 181

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              + E +   L+Q+       EA   IH P+      W   A+ RL ++EL   Q+ L+
Sbjct: 182 WTHIRETLPDSLIQQYRLIGKREAMWNIHLPQNQG---WLKQAQRRLKFEELFYNQLRLI 238

Query: 242 LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +   K+E    +  +  + +      +PF  T +Q+  IK+I  D     +M R+LQG
Sbjct: 239 KNKLLQKEEFPGQVFRDTSLMKHFYNELLPFELTGAQQRVIKEIYADFLSGKQMNRLLQG 298

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA I    A+  G QA +MAP  ILA QHY  +K +     + + I+TG+  
Sbjct: 299 DVGSGKTIVAFITCLIAIGNGAQACLMAPTEILADQHYNGLKPFADAMGLNLGILTGSTN 358

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR--LKLTQKA 418
           +  R    E +  G+ HI++GTHAL +D++QY  L L I+DEQHRFGV QR  L    + 
Sbjct: 359 KKRRVVLHEELQSGKMHILVGTHALLEDAVQYKNLGLCIIDEQHRFGVAQRAKLWRKNET 418

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH+L+MTATPIPRTL +T  G++D+S I E P GRKPIKTV        EV   ++  
Sbjct: 419 VPPHILVMTATPIPRTLAMTLYGNLDVSTIDELPKGRKPIKTVHKYDKHRSEVFGFIRQQ 478

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMD 535
           +  G++ Y + P IEE ++ +++ +++ F S+   F      I ++HG+M   +K+  M 
Sbjct: 479 IELGRQVYVVYPLIEESEKLDYKDLMDGFESMQRAFPRPTYEIGMLHGKMLPYEKDDEMK 538

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F     ++L+ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG + S CI++
Sbjct: 539 RFLKKETQILVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGADQSYCIMM 598

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
               LS ++ TRL  +  T +GF IA+ DL+ R  G++ G +QSG+   +IA      ++
Sbjct: 599 TGYKLSTDTRTRLETMVRTNNGFEIADVDLQLRGPGDLTGTQQSGVMDLMIADLAKDGAI 658

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIR 682
           L  AR+ A+ IL +DP+L   +   IR
Sbjct: 659 LSAARESAQAILAEDPELLLPQHAPIR 685


>gi|21232667|ref|NP_638584.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767279|ref|YP_242041.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21114475|gb|AAM42508.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572611|gb|AAY48021.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 713

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 248/697 (35%), Positives = 379/697 (54%), Gaps = 34/697 (4%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           PS      APLS+  GVG K +   +              DL  + P  + DR     I+
Sbjct: 9   PSLAVAGQAPLSSLPGVGPKVAEKFA------ARGILSLQDLWLHLPLRYEDRTRLTTIA 62

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGR 121
           ++       I G +        + R   ++ ++D + G + L FF+ +   +   F  G 
Sbjct: 63  QLQGGVPAQIEGRVEAMER-GFRFRPVLRVAMSDDSCGTLVLRFFHFRAAQVAQ-FSPGT 120

Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEAL 179
           ++ V G  K  +N   +VHP Y +    +D      ++ VY +  G+     +K+I +AL
Sbjct: 121 RLRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDCLDPVYPVLEGVGPATLRKLIGQAL 180

Query: 180 SRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDEL 233
            RLP     E +    LQ +  PS+  A   +H P    D         PA++RLA +EL
Sbjct: 181 ERLPPEAALELLPPHWLQDEQLPSLRSALLTMHRPPVDTDPQQLLAGGHPAQQRLAIEEL 240

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA Q++L   R   ++     +   G++ Q++ + +PF  T +Q+   + I  D++Q   
Sbjct: 241 LAHQVSLRRQRIALQRFRAPQLRG-GRLVQQLRKALPFQLTGAQQRVFEQIAHDLAQPAP 299

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + +   + + 
Sbjct: 300 MLRLVQGDVGSGKTVVAALAAMLAVEHGKQVALAAPTELLAEQHLANLRGWLEPLGVRIV 359

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    R  A+  +A GQA +++GTHAL QD++ ++ L L I+DEQHRFGV QRL 
Sbjct: 360 WLAGKVTGKARVAAMAEVASGQAQVVVGTHALMQDAVVFHDLALAIIDEQHRFGVHQRLA 419

Query: 414 LTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L  K       PH L+MTATPIPRTL + +  D+ +S I E P GR P++T+++   R  
Sbjct: 420 LRDKGAAAGSVPHQLVMTATPIPRTLAMAAYADLHVSAIDELPPGRTPVQTIVLSAERRP 479

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNF-----------RSVVERFNSLHEHFTS-S 517
           E++ER++   +EG++AYW+C  IEE ++++            ++    F +L        
Sbjct: 480 ELVERIRAACAEGRQAYWVCTLIEESEDTDKGAQNGPPRIEAQAAQVTFETLSAQLPGVR 539

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIENAE  GLAQLH
Sbjct: 540 VALVHGRMKPAEKQQAMLDFKQGRTDLLVATTVIEVGVDVPNASLMIIENAERLGLAQLH 599

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE DL+ R  GE+LG +
Sbjct: 600 QLRGRVGRGAAASSCVLLYQGPLSLMARQRLETMRQTNDGFVIAERDLELRGPGELLGTR 659

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 660 QTGLASFRIADLARDAGLLPRVQVLAERLLDEAPEIA 696


>gi|107021800|ref|YP_620127.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia AU 1054]
 gi|116688747|ref|YP_834370.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia HI2424]
 gi|105891989|gb|ABF75154.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia AU 1054]
 gi|116646836|gb|ABK07477.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia HI2424]
          Length = 771

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 245/696 (35%), Positives = 378/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      I E+    I    G +   + 
Sbjct: 87  KTADKLAKL------GLTRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFD-NE 139

Query: 82  FQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + + D  GE + L F       +K +   G+++ V G ++     + MVH
Sbjct: 140 VAYRPRRQLVVKIQDDDGEQLVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGMEMVH 198

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P      +      ++  VY    G+S    +K I  A+ R P LPE +  ++    L+ 
Sbjct: 199 PAVRVVEADAPLPQVLTPVYPSTAGVSQAYLRKAIENAVERTP-LPELLPPEIQRDYLKP 257

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P++ +A  I+H+PR   D     + + PA  R+ ++ELLA Q++L    ++ +    
Sbjct: 258 LDVPTLEQAVRILHHPRVDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAA 317

Query: 253 IPINV-----EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +          +  ++   +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT
Sbjct: 318 PAMPRRAATDTDALTTRLYAALPFTLTGAQARVVDEIAHDLTLAHPMQRLLQGDVGSGKT 377

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A   A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 378 VVAALAATQAIDAGYQAALMAPTEILAEQHARKLRAWLEPLGVTVAWLAGSLKAKEKRAA 437

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           +E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 438 IEAAALGTAQLVIGTHAIIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARD 497

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+++S I E P GR P+ T ++   R +EVI R++  
Sbjct: 498 FQPHQLMMSATPIPRTLAMTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREA 557

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR+S  DK +VM++F
Sbjct: 558 ALTGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMEAF 617

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 618 TRNEVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYT 677

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L++
Sbjct: 678 GPLSLTGRERLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLID 737

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR+ A  ++   P++ +      R L    QY +A
Sbjct: 738 PAREAAARLIAAYPEVVTQ--HLARWLGAREQYLKA 771


>gi|258514450|ref|YP_003190672.1| ATP-dependent DNA helicase RecG [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778155|gb|ACV62049.1| ATP-dependent DNA helicase RecG [Desulfotomaculum acetoxidans DSM
           771]
          Length = 692

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 236/680 (34%), Positives = 379/680 (55%), Gaps = 19/680 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +  P+   + VG + +  L K+            D+L+Y P  + +R     ++E S++ 
Sbjct: 7   ISTPIQYVKTVGPQRASMLQKL------GIYTVRDMLYYFPRRYEERKLIEFVNECSQDD 60

Query: 69  IVTITGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            V++ G +      +L++     K+ L+DG      ++F +    +K     G  ITVTG
Sbjct: 61  TVSVRGTVLGSQDLKLRQGLTATKVALSDGMNIFYAVWFNQ--PHIKKQIAPGLTITVTG 118

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PV 184
           K+ +    + +    +  +NS      +  I  VY+L   ++    + +I   L      
Sbjct: 119 KVDQRYGAVQIRVADFELNNSSVAENYWCSIVPVYALSEKINQKFLRGLIKTCLEEYTSE 178

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             E+I ++L++K     +  +   +H P+   + E    AR RL ++EL   Q+ L   +
Sbjct: 179 QEEFIPENLIKKYRLLPLNRSLLWMHQPQNILETE---KARRRLIFEELFLLQLLLAARK 235

Query: 245 KQF-KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +   +K      + + +I +K L N+ F  T +Q    ++I+ DM +   M R+LQGDVG
Sbjct: 236 RTITRKLKFFTYSDKNEILKKFLNNLSFGLTPAQSRVWQEIMTDMHRSVPMYRLLQGDVG 295

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+++ +A+  A E G Q  +M P  ILA+QHY F+K+Y +   I V ++TG M +A 
Sbjct: 296 SGKTVISTLALLKAAENGLQGALMVPTEILAEQHYLFLKRYMEPLGINVGLLTGKMKKAE 355

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +  A + I  GQ  I+IGTHAL Q++I +  L + ++DEQHRFGV+QR  L  K   P +
Sbjct: 356 KNMAFQLIESGQMQIVIGTHALIQENIAFKHLAMAVIDEQHRFGVRQRATLQDKGICPDM 415

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T  GD+DIS I + P GRKPIKT +I  N++ +  E ++  +  G+
Sbjct: 416 LVMTATPIPRTLAMTLYGDLDISVIDQLPPGRKPIKTHVIYENKLPDTYEFMRKQIRIGR 475

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP +EE +    ++ ++    L E      S+ ++HGRM    KE VM  F+ G 
Sbjct: 476 QAYIICPLVEESEHVESQAAIDLALELSEGELADFSVGLLHGRMKSELKEEVMTKFRLGE 535

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
              L+ TTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGRG E S CIL+ +P  +
Sbjct: 536 IDALVTTTVIEVGVDVPNATVMVILDADRFGLAQLHQLRGRVGRGLEQSYCILVANPK-T 594

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
             +  RL+ +  +EDGF +AE+DL+ R  GE  G +QSG+P   +A       +LE+AR+
Sbjct: 595 DEARARLAAMHRSEDGFYLAEQDLRIRGPGEFCGTRQSGLPDLKVADLIRDWKILEVARQ 654

Query: 662 DAKHILTQDPDLTSVRGQSI 681
           +A  +L  DP+L     +++
Sbjct: 655 EAIDLLASDPELKKPENEAL 674


>gi|82523774|emb|CAI78518.1| hypothetical protein [uncultured bacterium]
          Length = 694

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 225/701 (32%), Positives = 386/701 (55%), Gaps = 26/701 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            +   +GVG +     +++            DL+++ P  + DR +   ++++   +  T
Sbjct: 8   SVQFVKGVGPQKKKLFARL------GIETVEDLMYFFPRRYEDRRHIVPLAKVVVGQWQT 61

Query: 72  ITGYISQHSSFQ--LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +    + +    K+  +++ ++DG+G I+ ++F +      + F  GR++   GK+
Sbjct: 62  VRGKVLLGEARKSWYTKKHVFEVAIDDGSGRISCVWFNQ--PYQAHYFVPGRQVVCYGKV 119

Query: 130 KKLKNRIIMVHPHYIFHNS---QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVL 185
            + K+R+ MV P Y        + ++   I  +Y L  G++    +K++  AL +    L
Sbjct: 120 DQYKDRLQMVSPEYEVIEEDEKESLSLNRIVPMYPLTKGMTQRFIRKVVWAALGKYKEGL 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            + +   L  K    ++  +   IH P+   D +      +R++++E    Q++++L R 
Sbjct: 180 TDELPVPLRNKLHLYNLKRSIENIHFPQNENDQQEA---LKRISFEEFYFFQVSVMLRRL 236

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
              ++ G    +   + +K      F+ T +Q   I+DI +D+ +   MLR+LQGDVGSG
Sbjct: 237 SITQKQGFAHVIPDVLTEKFSEGFGFNLTGAQNRVIQDIKEDLQKPTPMLRLLQGDVGSG 296

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK---KYTQNTQIIVEIITGNMPQA 362
           KTLVAL    AA E   Q+ +MAP  ILA+QHY+ I    K      +   ++ G++   
Sbjct: 297 KTLVALFGTLAAFENKHQSALMAPTEILAKQHYDTICALMKKGPLKGMKAALLVGSLKDQ 356

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            + K  ++IA G   +++GTHAL  +++ +  L  V++DEQH+FGV+QR  L +K   P 
Sbjct: 357 EKEKVHKKIAAGTLDLVVGTHALITENVMFKDLSYVVIDEQHKFGVRQRALLAEKGRNPD 416

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T  GD+D+S I E P GR  I T         EV + +K  L EG
Sbjct: 417 VLIMTATPIPRTLCITLYGDLDVSVIDEMPPGRGKITTRHFKHENDKEVYQLVKKRLDEG 476

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540
           ++AY + P IEE ++S+ ++  E F +  +       + ++HG+M   + + +M+ FK+G
Sbjct: 477 RQAYIVYPIIEESEKSDLKAADEMFKNFKKKEFKGYRVGLVHGQMKQQEAQKIMEQFKDG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTV+EVG+DV +A++++IE+AE FGLAQLHQLRGR+GRG   SSC+L+     
Sbjct: 537 KIDVLVATTVLEVGVDVANATVMVIEHAERFGLAQLHQLRGRIGRGVHDSSCLLIADLE- 595

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++ ++ R+S +  T DGF IA+EDL  R  G   G  Q G+ +  +A P     +LE+AR
Sbjct: 596 TEEAHKRISAICATNDGFKIAQEDLMIRGPGHFFGRHQHGLNELKVANPATQLDILELAR 655

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLY-QYNEAFQFIRAG 700
           ++A+ +L  DP L +  G++ +IL  +  +Y    Q + AG
Sbjct: 656 EEAQELLQDDPKLDT--GKNYQILHVIQKRYPGYLQMVSAG 694


>gi|254493027|ref|ZP_05106198.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 1291]
 gi|226512067|gb|EEH61412.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 1291]
          Length = 680

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 238/668 (35%), Positives = 361/668 (54%), Gaps = 16/668 (2%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
             +  L K+      N     DL+ + P  + D  +   I +        + G +  H  
Sbjct: 15  ASAKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQE 67

Query: 82  FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
              + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP
Sbjct: 68  VTFKPRKQLIVQIADGSGSVLFLRFIHFYAGHQKQTAVGKRIRAVGEIKHGFYGDEMIHP 127

Query: 142 HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPS 201
                    +    +  VY    GL+    ++II  AL   P L + +   LL +   P 
Sbjct: 128 KIRDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPH 185

Query: 202 IAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
           +AE+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  
Sbjct: 186 LAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAALRG 245

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +G + Q + + +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++   A
Sbjct: 246 DGTLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSALTA 305

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           +E+G Q  +M P  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   
Sbjct: 306 IESGAQVAVMTPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKAKDEAKAKLADGSVK 365

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL +
Sbjct: 366 IAVGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAM 425

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +   D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE + 
Sbjct: 426 SFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESET 485

Query: 498 SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+D
Sbjct: 486 LQLQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVD 545

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    D
Sbjct: 546 VPNAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTD 605

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           GF IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V
Sbjct: 606 GFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI--V 663

Query: 677 RGQSIRIL 684
                R L
Sbjct: 664 EAHLARWL 671


>gi|323489548|ref|ZP_08094775.1| ATP-dependent DNA helicase RecG [Planococcus donghaensis MPA1U2]
 gi|323396679|gb|EGA89498.1| ATP-dependent DNA helicase RecG [Planococcus donghaensis MPA1U2]
          Length = 682

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 236/666 (35%), Positives = 378/666 (56%), Gaps = 23/666 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             ++T +GVGK+ +  L ++            DL+   P    D      +++      V
Sbjct: 7   DSVATLKGVGKQAAETLQEMK------IETLHDLIMTFPYRHEDF-QLKDLADTPHNERV 59

Query: 71  TITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           T+ G +    S     + +   ++ +  G   I  +FF +    +K     G  ITVTGK
Sbjct: 60  TVEGRVESEPSVLFLGKNKSRTQVRVLVGRHLIKAIFFNQ--PYVKAKLHLGEIITVTGK 117

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPE 187
             + + ++I V  H I   +   +F   E VYSL   +    F+K++ +AL  +   + +
Sbjct: 118 WDRGR-QVITVSSHTIGPRTNGADF---EPVYSLKGSIHQKTFRKLMRQALDLVKEDIED 173

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            + K L+       I +A   +H P    D E    AR R  Y+ELL  Q+ +  +RK+ 
Sbjct: 174 CLPKSLVDTYQLAPIQDALEWVHFPP---DGEKVKQARRRFVYEELLVFQLKMQALRKKN 230

Query: 248 KKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           ++E G    + + +  +K + ++PF  T +Q+  + +I +DM +  RM R+LQGDVGSGK
Sbjct: 231 REEEGGSFIDYDLEQLKKFIESLPFDLTDAQKRVVNEICKDMKEPFRMNRLLQGDVGSGK 290

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA IA+ AA  AG Q  +MAP  ILA+QH   ++++ +   + + ++TG++    R+ 
Sbjct: 291 TVVAAIALYAAFTAGLQGALMAPTEILAEQHANTLEQWFRPFSLNIALLTGSVKGKKRQL 350

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE++A G+  ++IGTHAL Q  +++ KL LVI DEQHRFGV QR  L  K   P VL M
Sbjct: 351 ILEQLAAGEIDLLIGTHALIQPEVRFDKLGLVITDEQHRFGVDQRRVLKDKGYNPDVLFM 410

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL +++ G++D+S I E P GRK I+T  +      +++ R++  L+ G++AY
Sbjct: 411 TATPIPRTLAISAFGEMDVSIIDEMPVGRKEIETYWMKKEMFGKIVGRMEKELAAGRQAY 470

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP IEE  + ++++ V+ F  L  +F     + ++HGR+   +KE  M  F  G   +
Sbjct: 471 VICPLIEESDKLDYQNAVDLFQQLAIYFKDRFTVGLMHGRLHPDEKEQTMREFSEGQVDV 530

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVG++V +AS ++I +AE FGL+QLHQLRGRVGRG E S C+LL  P  ++  
Sbjct: 531 LVSTTVVEVGVNVPNASFMLIYDAERFGLSQLHQLRGRVGRGSEQSYCVLLADPK-TEIG 589

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R++ +  T DGF++AE+DL+ R  G+  G KQSG+P+F +A        LE ARKDA+
Sbjct: 590 KERMTTMTETNDGFVLAEKDLQLRGPGDFFGRKQSGIPEFKMADLIHDYRALEAARKDAE 649

Query: 665 HILTQD 670
            +++ +
Sbjct: 650 KLISSE 655


>gi|313623266|gb|EFR93510.1| ATP-dependent DNA helicase RecG [Listeria innocua FSL J1-023]
          Length = 682

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 237/680 (34%), Positives = 380/680 (55%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--XYLKSKISIGETVTISGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            K + +I           +++     +E VY L   L     +K    A       + E 
Sbjct: 119 DKSRAQITASKIKIGAVENEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSKDIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  ++H P+  ++      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPTNLLEKYQLMDRLEAVRVLHFPKNNEEL---KQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   I+IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSIDILIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRILREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYVPGLMHGKLLPADKEQIMRDFNDKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H
Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +     +  LL
Sbjct: 651 MIFEENMLENKTYDKLVALL 670


>gi|56964070|ref|YP_175801.1| ATP-dependent DNA helicase RecG [Bacillus clausii KSM-K16]
 gi|56910313|dbj|BAD64840.1| ATP-dependent DNA helicase RecG [Bacillus clausii KSM-K16]
          Length = 681

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 229/688 (33%), Positives = 366/688 (53%), Gaps = 19/688 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG++    L+K+            DLL Y P  + D   +   +E + +  VT+
Sbjct: 8   VTAIKGVGEESGKLLNKM------GILTVGDLLEYFPFRYEDYALKRP-TEAAHDERVTM 60

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G I   +S +   +   ++        + +   +     LK+    G  +TVTGK    
Sbjct: 61  AGKIQNEASVRYYGKNKNRLTFRIEVDGVLVTATFFNRAFLKSKLQPGMDVTVTGKWDAH 120

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEK 191
           +  I      +     +      +E VY     ++    +K I  A S     + + + +
Sbjct: 121 RLTITGSELKFGIVERE----GNLEPVYHSSGKVTSKALQKWIAAAFSAYGSQIEDPLPE 176

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
            + ++       EA   +H P      E T  AR R  Y+ELL  Q+ +   ++  + + 
Sbjct: 177 SIRKRYKLMGKGEALRHLHYPFNR---EATKQARRRYVYEELLLFQLKMRAFKEAIRNQQ 233

Query: 252 GI-PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
           G   ++V+          +PF  T +Q+ AI DI+ D+    RM R+LQGDVGSGKT VA
Sbjct: 234 GGGQLDVKEDDIAAFTSLLPFPLTGAQQRAIADIVSDIRSPLRMNRLLQGDVGSGKTAVA 293

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
              MA  V AGGQ  +MAP  ILA+QH   I+ + +   +   ++ G++    RR+ L++
Sbjct: 294 AACMAGVVGAGGQCALMAPTEILAEQHATTIEAWFEPLGLKTALLVGSVKGKKRRELLDQ 353

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           IA G+  I+IGTHAL Q+ + +  L LVI DEQHRFGV+QR  L  K   P VL MTATP
Sbjct: 354 IAKGEVDIVIGTHALIQEDVVFSTLSLVITDEQHRFGVEQRRILRDKGEHPDVLFMTATP 413

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL ++  GD+D+S + E PAGRKPI+T  +    ++ V+E ++  + +G++AY ICP
Sbjct: 414 IPRTLAISVFGDMDVSVLDEMPAGRKPIETYWVQHEMLERVLEFVRKEVKKGRQAYVICP 473

Query: 491 QIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            IEE ++ + ++ ++  + L  HF   + + ++HGR+   +KE+VM +F      +L++T
Sbjct: 474 LIEESEKLDVQNAIDFHSMLTAHFQGDAQVGLMHGRLQAAEKEAVMAAFARNELHILVST 533

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG+E S CIL+  P  ++    R+
Sbjct: 534 TVVEVGVNVPNATVMVIYDADRFGLAQLHQLRGRVGRGDEKSYCILVAQPK-TEVGKERM 592

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            ++  T DGF+++E DL+ R  G+  G KQSG+P F +A        LE AR+DA  I  
Sbjct: 593 RIMTETSDGFVLSERDLELRGPGDFFGSKQSGLPDFKLADVVHDYRTLEAARQDADRIFK 652

Query: 669 QDPDLTSVRGQSIRILLYLYQYNEAFQF 696
            +   T    + +   L      E  + 
Sbjct: 653 ANVLKTDPEYRLLYDYLKKTGAFEEVKL 680


>gi|240013433|ref|ZP_04720346.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae DGI18]
 gi|240120504|ref|ZP_04733466.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID24-1]
          Length = 680

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 239/666 (35%), Positives = 362/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPRLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAALRGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + + +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|224824830|ref|ZP_03697937.1| ATP-dependent DNA helicase RecG [Lutiella nitroferrum 2002]
 gi|224603323|gb|EEG09499.1| ATP-dependent DNA helicase RecG [Lutiella nitroferrum 2002]
          Length = 682

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 238/659 (36%), Positives = 368/659 (55%), Gaps = 14/659 (2%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           V    +  L K+         R  DL+ + P  + D  +   I++    + V + G +  
Sbjct: 14  VAPATAKRLEKL------GIRRRFDLVLHLPLRYEDETHLYPIAQAPYGQAVLVEGEVVA 67

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           H   Q + R+   + L D +G + L F +     LK    +G+++   G++++      M
Sbjct: 68  H-EVQYRPRKQLLVQLEDKSGTLMLRFIHFYPNHLKQ-LAQGQRVRALGEVRRGFRGDEM 125

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           VHP        D     +  VY    GL+  + +++I   L     L + + + + +   
Sbjct: 126 VHPKIREVLEGDPLADSLTPVYPTVNGLTQPVLRRLIHAELKA-QSLSDTLPEAVREHHG 184

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
               A++  ++H P         +    PA +RL +DELLA Q+++ L  +  ++     
Sbjct: 185 LVPFADSIRLLHAPTPEYSATQLADPALPAWQRLKFDELLAQQLSMRLAYRARRRGKAPV 244

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           I  +G++   +  ++PF+ T +Q+  + +I  D++Q + M R+LQGDVGSGKT+VA ++ 
Sbjct: 245 IAGDGRLRAALSDSLPFALTAAQQKVLGEITADLAQPHPMHRLLQGDVGSGKTVVAALSA 304

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
            AA+EAG Q  +MAP  ILA+QHY  +  +     I V  ++G++ +  +  ALE++A G
Sbjct: 305 LAAIEAGFQVALMAPTEILAEQHYLKLAAWLAPLGIEVAWLSGSLRKKQKTAALEQVASG 364

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           QA ++IGTHALFQD + +  L L IVDEQHRFGV QRL L  K   PH L+M+ATPIPRT
Sbjct: 365 QARLVIGTHALFQDEVVFDNLGLSIVDEQHRFGVGQRLALQGKGGEPHQLMMSATPIPRT 424

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PI T +I   R DEV+  +    S G++AYW+CP IEE
Sbjct: 425 LAMSFYADLDVSVIDELPPGRTPIVTKLINSARRDEVVAYVDRTCSGGQQAYWVCPLIEE 484

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ V+    L E      + ++HGRM   +K +VM +F     ++L+ATTVIEV
Sbjct: 485 SETLQLQTAVDTHAQLAEDLPQWGVGLVHGRMKPAEKAAVMAAFAANELQVLVATTVIEV 544

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE  GLAQLHQLRGRVGRG   S+C+L++  PLS+ +  RL V+  
Sbjct: 545 GVDVPNASLMVIEHAERMGLAQLHQLRGRVGRGAAKSACVLMFDTPLSELAKARLKVIYE 604

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
             DGF IA +DL  R  GE LG +QSG+P    A  E    LLE A++ A  +L + P+
Sbjct: 605 NTDGFEIARQDLNIRGPGEFLGARQSGLPMLRFADLEQDIELLEAAKELAPELLKRWPN 663


>gi|163790813|ref|ZP_02185238.1| ATP-dependent DNA helicase RecG [Carnobacterium sp. AT7]
 gi|159873881|gb|EDP67960.1| ATP-dependent DNA helicase RecG [Carnobacterium sp. AT7]
          Length = 682

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 233/682 (34%), Positives = 370/682 (54%), Gaps = 22/682 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             ++  +S    VG+K    L ++            DLL ++P  + D   R  + EI +
Sbjct: 3   KSIYDSVSVLPYVGEKRLEALHQL------GIHTINDLLSHYPIRYEDIQER-DLLEIED 55

Query: 67  ERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           +  VT+ G +   +       K+      L      I++ FF +    LK+    G +I 
Sbjct: 56  QEKVTLKGNVVSEAVVSRFGPKKNRLSFRLIIEHAVISVTFFNQ--AYLKSKIVTGEEIA 113

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-P 183
           V GK    +  +  +    I     D      E+VYS    +      ++I EA +    
Sbjct: 114 VFGKWDAKRKSLTGIK---ILGTRSDSEKGDFESVYSANKHIKQSTILQLITEAYNLYQD 170

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            +PE +  +L  K    S  +A   +H P   K       AR  + ++E L  Q+ + ++
Sbjct: 171 HIPEVVPPELRIKYRLISHRDAVYAMHFPASEK---QKKQARREVVFEEFLLYQMRMQIV 227

Query: 244 RKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           RK+ K    G  +N      +  +  +PF  TK+Q+  + +I  D+ Q   M R+LQGDV
Sbjct: 228 RKKQKAMGKGNTLNYNVTDLRNFIETLPFELTKAQKRVVNEICSDLRQPIHMHRLLQGDV 287

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA IA+ AA   G Q+ +M P  ILA+QH E + +     ++ + ++TG+    
Sbjct: 288 GSGKTIVAAIALYAATNVGVQSALMVPTEILAEQHMESLSELFNPLEVRIALLTGSTKTK 347

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            RR  LE++A+G+  ++IGTHAL Q  + + KL LVI DEQHRFGV QR  L  K     
Sbjct: 348 DRRLILEQLANGELDVLIGTHALIQQDVYFSKLGLVITDEQHRFGVNQRKLLRDKGKDAD 407

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  I     ++ +E +++ L +G
Sbjct: 408 VLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIPIQTTWIKPQNFEKTLEFIELQLRKG 467

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540
            +AY ICP IEE +  + ++  + +  L  ++     + ++HG+M   +KES M++FK  
Sbjct: 468 SQAYVICPLIEESETMDVKNATDIYEKLTAYYGDRFQVGLLHGKMKSSEKESTMENFKEK 527

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L++TTVIEVG++V +A+ +II +A+ FGL+QLHQLRGRVGRG++ S CIL+ +P  
Sbjct: 528 KLQVLVSTTVIEVGVNVPNATTMIIYDADRFGLSQLHQLRGRVGRGDKESYCILVANPK- 586

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++N   R+ ++  T DGF+++E+DL+ R  G++ G KQSG+P F I         LE AR
Sbjct: 587 TENGMERMKIMTETTDGFILSEKDLELRGPGDLFGNKQSGLPDFKIGDIIGDFGALEAAR 646

Query: 661 KDAKHILTQDPDLTSVRGQSIR 682
           ++A  ++ Q   LT+   Q +R
Sbjct: 647 QEANQLVNQKDFLTNEVYQQLR 668


>gi|240127511|ref|ZP_04740172.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-93-1035]
 gi|268685886|ref|ZP_06152748.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-93-1035]
 gi|268626170|gb|EEZ58570.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-93-1035]
          Length = 680

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 239/666 (35%), Positives = 362/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLKLPRLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAALRGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + + +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|227904224|ref|ZP_04022029.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
 gi|227867872|gb|EEJ75293.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
          Length = 682

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 219/683 (32%), Positives = 364/683 (53%), Gaps = 22/683 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +  L      G+       DLLFY P  + D      + +I +
Sbjct: 8   NALFAPVTDLKGVGTKTAADL------GSLGIYSIYDLLFYFPFRY-DELQTLPLDQIMD 60

Query: 67  ERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            + V + G ++          K+      +      I + FF +    LKN    G++I 
Sbjct: 61  GQKVVLKGIVATEPFVSRFGYKKSRLSFKMRIDHEVIMVNFFNQ--PWLKNKIEIGQEIA 118

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           + GK    +  +      + F  +++ N   +  +Y +   +       +I  A+   L 
Sbjct: 119 IYGKYNVARQSLSA----FKFVAAKE-NDSGMAPIYPVNRHIKQKKLVSLIDLAIEEFLD 173

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + + + + Q+    +  E    +H+P+ + D E     +    + E    ++ L L+
Sbjct: 174 QVNDIVPEKIRQEYHLLNDREIITKMHHPKNSNDAE---IGKRSAIFREFFIFELQLALL 230

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            K+   ++G     + K    + +++PF  +  Q+  + +I  D+   N+M R+LQGDVG
Sbjct: 231 TKKDGNQLGYAKKYDLKEVANLTKSLPFELSDDQKHVVNEIFADLHSSNQMRRLLQGDVG 290

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   I V ++T N     
Sbjct: 291 SGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPFGIRVALLTSNTKTLE 350

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+    +  G  +++IGTHAL Q ++ + KL LVI+DEQHRFGV QR  L  K   P V
Sbjct: 351 RREIYRELTDGTINVVIGTHALIQKNVIFKKLGLVIIDEQHRFGVGQRQALINKGDNPDV 410

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL LT  GD+ +S+I   P+GRKPI +     +++ +V +R+   L +G 
Sbjct: 411 LAMTATPIPRTLALTVYGDMTLSEIHHLPSGRKPIISSWKTSSQMKDVYKRMHEQLDQGF 470

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I + +  + ++  E    L   F    + ++HG+M  + K+ +M +F +G  
Sbjct: 471 QIYAVTPLITDSETLDLKNAEELHEKLSHDFPDKKVVLLHGQMPGVKKDEIMSAFASGEI 530

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ T+VIEVG+DV +A+++II NA+ FGL+QLHQLRGR+GRGE  S C+ +  P  + 
Sbjct: 531 NILVTTSVIEVGVDVANANMMIIYNADRFGLSQLHQLRGRIGRGETQSYCVFIADPR-TD 589

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F +     + + L +A+K 
Sbjct: 590 TGKARMKIISATNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVAQKI 649

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
           A+ ++  DPDL     + ++ +L
Sbjct: 650 ARKLVNDDPDLLDPEHKILKQML 672


>gi|294627104|ref|ZP_06705692.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294667377|ref|ZP_06732595.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292598537|gb|EFF42686.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292602818|gb|EFF46251.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 717

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 246/690 (35%), Positives = 377/690 (54%), Gaps = 36/690 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           LS+  GVG K +   +              DL  + P  + DR     I+++       I
Sbjct: 19  LSSLPGVGPKVADRFA------ARGILSVQDLWLHLPLRYEDRTRLTTIAQLQGGVPAQI 72

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +        + R   ++ ++D + G + L FF+ +   +   F  G ++ V G  K 
Sbjct: 73  EGRVEAVER-GFRFRPVLRVAVSDASHGTLVLRFFHFRAAQVAQ-FAVGTRVRVFGTPKP 130

Query: 132 LKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
            ++   +VHP Y +    +D      ++ VY +  G+     +K+I +AL RLP     E
Sbjct: 131 GQHGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIGQALERLPPESALE 190

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLM 243
            +    LQ +  PS+  A   +H P    D         PA++RLA +ELLA Q++L   
Sbjct: 191 LLPPHWLQDERLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQQRLAIEELLAHQLSLRRQ 250

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   ++     +   G + Q++ + +PF  T +Q+   + I  D++Q + MLR++QGDVG
Sbjct: 251 RIALQRLHAPSLPGNGTLVQQLRKALPFQLTGAQQRVFEQIAHDLAQPSPMLRLVQGDVG 310

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + +   I +  + G +    
Sbjct: 311 SGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLANLRSWLEPLGIRIVWLAGKVTGKA 370

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           R  A+  +A GQA +++GTHAL Q+++ ++ L L I+DEQHRFGV QRL L  K      
Sbjct: 371 RAAAMAEVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHRFGVHQRLALRDKGAAAGS 430

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+MTATPIPRTL +++  D+D+S I + P GR P++T+++   R  E++ER++   
Sbjct: 431 VPHQLVMTATPIPRTLAMSAYADLDVSAIDQLPPGRTPVQTIVLSAERRPELVERIRAAC 490

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVE--------------RFNSLHEHFTS-SIAIIHGR 524
           +EG++AYW+C  IEE +E    + V+               F +L        +A++HGR
Sbjct: 491 AEGRQAYWVCTLIEESEEPGKGAQVQQGGPPRIEAQAAEVTFEALSAQLPGVRVALVHGR 550

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIENAE  GLAQLHQLRGRVG
Sbjct: 551 MKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVG 610

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+ R  GE+LG +Q+G+  F
Sbjct: 611 RGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLQLRGPGELLGTRQTGLASF 670

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            IA       LL   +  A+ +L + PD+ 
Sbjct: 671 RIADLARDAGLLPRVQVLAERLLAEAPDIA 700


>gi|56552540|ref|YP_163379.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|56544114|gb|AAV90268.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 692

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 281/708 (39%), Positives = 417/708 (58%), Gaps = 24/708 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA   + +GVG      L K         TR  DLLFY PS  + R     
Sbjct: 1   MRPDILNPLFAETESLKGVGSALLKPLKK------RQLTRLKDLLFYLPSGQMRRVKSDH 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFE 119
           I+        T+   ++         R P++IL  D  G +I LL+F   +   + +   
Sbjct: 55  INAKDVG--ATVILTLTAKEYRHPSGRGPFRILAEDPFGGQIQLLWFGNHSSWARKLMPI 112

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V+GK+   + ++ +VHP  I   S++ + PL E +Y L  GL+     +++ +A 
Sbjct: 113 GETRLVSGKLDIYQEQLQIVHPSEIVPLSEENSIPLEETLYPLSDGLTHRRIGQLVRQAW 172

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            + P LPEWIE  LL+K  +PS  EA   IH             A+ R+ YDE+ A Q+A
Sbjct: 173 EKSPDLPEWIEPSLLKKHQWPSWREAVERIHQHPDD------RAAKLRIGYDEIFANQLA 226

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R   +++ G P+  +G +   +  N+PF PT +Q  ++ +I  DM Q + MLR+LQ
Sbjct: 227 LKLIRAANRRKRGFPLKGDGHLRDAL--NLPFQPTGAQRRSLAEIEGDMQQASPMLRLLQ 284

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT VAL ++  A EAG Q  ++AP  ILA+QH+E + +      + + ++TG  
Sbjct: 285 GDVGSGKTWVALHSLLIAAEAGYQGALLAPTEILARQHFETLSQQLAGLPVNIALLTGRD 344

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   L  +A G  H+++GTHA+FQ+ + Y  L L I+DEQHRFGV QR+ L +KA 
Sbjct: 345 KGKLRESTLMGLADGSIHLLVGTHAIFQEKVNYKNLGLAIIDEQHRFGVAQRMMLAEKAI 404

Query: 420 A-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH+L+MTATPIPR+L+LT+ G++D+S++ E P GR+P++T +I   +I E+I  L   
Sbjct: 405 HTPHLLVMTATPIPRSLMLTAHGEMDVSRLDEMPPGRQPVETRVISSRKIPEIIASLGRH 464

Query: 479 LSEGKKAYWICPQI------EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           ++EG ++YW+CP +      E+   +   +  +RF+ L +HF   + ++HG+M   +K+ 
Sbjct: 465 IAEGGQSYWVCPAVGEADIEEDFSPNAIAAAEQRFSLLQQHFGKKVGLVHGKMKPAEKDK 524

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VMD F  G   +L+ATTVIEVG++V +A+++II+ AE FGLAQLHQLRGRVGRG   S C
Sbjct: 525 VMDDFAAGKIAVLVATTVIEVGVNVPNATLMIIDQAERFGLAQLHQLRGRVGRGGGRSIC 584

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LL    L+  +  RL++++   DGF +AEEDL+ R  GEILG KQSG   F IA PE  
Sbjct: 585 LLLRSEELTSVARERLALIRECNDGFRLAEEDLRLRGSGEILGTKQSGESHFQIASPEDL 644

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             LL IA  DA+ ++ +D  L+  RGQ+ RI LYL++ +    F+R+G
Sbjct: 645 SELLPIANDDARLLVDRDGGLSGERGQAARIALYLFERDAGVSFLRSG 692


>gi|322412623|gb|EFY03531.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 671

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 240/674 (35%), Positives = 374/674 (55%), Gaps = 26/674 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP++  +G+G K +    K+         +  DLL Y+P  + D      + E+ +  
Sbjct: 3   LTAPIAHLKGLGPKSAEKFQKL------GIYQIEDLLLYYPFRYEDF-KSKSVLELLDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ITG +    + Q    +  ++      GE+ +   +     L++    G ++ V GK
Sbjct: 56  KSVITGTLVTPPNVQYYGFKRNRLTFKIKQGEVVIGVSFFNQPYLQDKLTLGNEVAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPVLP 186
             + K  +  +                ++ VY +  G+S     K I  A     L  L 
Sbjct: 116 WDQKKTALTGMKLLMTVEED-------LQPVYHVAQGVSQTALIKAIKAAFDSGALDELK 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E I   LL+K        A   +H P+   D+     A  R+ ++ELL  Q+ L ++++ 
Sbjct: 169 ENIPNRLLEKYRLMPRQAAVYAMHFPKTLTDY---KQALRRIKFEELLYFQLRLQVLKQA 225

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            + E   + I ++ +     +  +PF  T++QE ++++IL+DM     M R+LQGDVGSG
Sbjct: 226 NRSEDSGLAIALDQEKINHQIAALPFPLTQAQERSLQEILRDMRSGAHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT++A +AM AA  AG Q+ +M P  ILA+QHY+ + K      + + I+T  M    +R
Sbjct: 286 KTVIASLAMYAAYTAGLQSALMVPTEILAEQHYDSLIKLF--PNLSIAILTSGMKAPEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
             L  IA G   +I+GTHAL QD++QY+KL LVI DEQHRFGV+QR    +K   P VL+
Sbjct: 344 TTLAAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGDNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++D V+  +K  L +G +A
Sbjct: 404 MTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQQLDTVLAWMKTELEQGAQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ V     L  +F   + IA++HG+M   +KE++M +FK     
Sbjct: 464 YVISPLIEESEALDLKNAVALEVELKAYFKASARIALMHGKMKADEKEAIMQAFKAQEID 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LL++TTVIEVG++V +ASI++I +A+ FGL+QLHQLRGRVGRG + S  IL+ +P  +++
Sbjct: 524 LLVSTTVIEVGVNVPNASIMVIMDADRFGLSQLHQLRGRVGRGYKQSYAILVANPK-TES 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R++++  T DGF++AE DLK R  GEI G +QSG+P+F  A      ++LE ARK A
Sbjct: 583 GEERMTIMTTTNDGFVLAEADLKMRGAGEIFGTRQSGLPEFKTADIVEDYAILEEARKVA 642

Query: 664 KHILTQDPDLTSVR 677
             ++T +P     +
Sbjct: 643 T-MITSEPHWEQQK 655


>gi|194337413|ref|YP_002019207.1| ATP-dependent DNA helicase RecG [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309890|gb|ACF44590.1| ATP-dependent DNA helicase RecG [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 706

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 248/714 (34%), Positives = 378/714 (52%), Gaps = 36/714 (5%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             ++  +GVG K    L +      A      DL  Y P  ++DR     IS +++   V
Sbjct: 5   TSIAYLKGVGTKKGAILRE------AGMVTLDDLFDYFPRRYLDRSAMKSISSLADGETV 58

Query: 71  TITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           T+ G + +         R  +K  L D TG + L +F R          +G  + V GK+
Sbjct: 59  TVVGTVIKTQLDGDSPGRARFKAWLGDQTGVLELTWF-RGVRYFSRSVVQGDSLAVHGKV 117

Query: 130 KKLKNRIIMVHPHY-------------IFHNSQDVNFPLIEAVYSLPT-----GLSVDLF 171
               +   M HP Y                + +  N   I  +Y         GL     
Sbjct: 118 SYFGHHAQMQHPDYDRLTPDLIESRNGECSDFELYNTGKIIPLYPTNEAMKQAGLGSKSL 177

Query: 172 KKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
           + +I  A     P   E +   +L   +   +AEA+  +H P      E  + AR R+ +
Sbjct: 178 RTLIARAFELCTPGKEENLTSSMLADNNLLPLAEAYREMHFPSS---HEQLARARYRMKW 234

Query: 231 DELLAGQIALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
            EL   Q+   L   +  +    +     G++ QK+   +PF+ T++Q++A+++I +D+ 
Sbjct: 235 TELFYAQLLFALRHSEIRRNRAAVKFTHSGEVTQKLYATLPFALTEAQKTAVREIYRDLR 294

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
             + M R+LQGDVGSGKT+VA+ AMA AV+ G QA  MAP  ILA QHY  +K+      
Sbjct: 295 SGSPMNRLLQGDVGSGKTIVAMFAMALAVDNGLQAAFMAPTEILAVQHYLVMKRLFNPLG 354

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + V ++TG   +  R++ L  +  G+ HI +GTHA+ +  + Y  L LVI+DEQHRFGV 
Sbjct: 355 LQVGLVTGRQRKKERQEVLAALGSGELHIAVGTHAMIEPGVSYATLGLVIIDEQHRFGVL 414

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR    +KA  PHVLLMTATPIPRTL +   GD+D+S I + P GR P++T++       
Sbjct: 415 QRKAFQEKAIHPHVLLMTATPIPRTLTMGVFGDLDVSVIRQMPVGRIPVRTIVRSEEEKG 474

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSD 527
           +V + L+  +++G++ Y + P +EE ++ + ++ VE +  L     +     +IHG++S 
Sbjct: 475 KVYDFLRAEIAKGRQGYIVYPLVEESEKMDLKAAVESYQELSSTLFADLRSGLIHGQLSP 534

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +KESVM+ F+ G   LL+ TTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRGE
Sbjct: 535 DEKESVMEQFRRGEIDLLVGTTVIEVGVDVPNATVMVIEHAERFGLAQLHQLRGRVGRGE 594

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLI 646
             S+C LLY   +S ++  RLS +++T DGFLI+E D K R  G ILG +QSG +    +
Sbjct: 595 HRSTCFLLY-AKMSADARERLSAMESTTDGFLISEIDAKIRGAGNILGKEQSGTLSGLRV 653

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A       +++ AR  A  I+ +D  L S     IR   Y+ QY++ F     G
Sbjct: 654 ADLNKDFDIMQSARAAAFRIVEEDGQLRSAEHVMIR-ECYVRQYHDRFTLADIG 706


>gi|255015905|ref|ZP_05288031.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_7]
 gi|262384186|ref|ZP_06077322.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_33B]
 gi|262295084|gb|EEY83016.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 2_1_33B]
          Length = 698

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 245/686 (35%), Positives = 375/686 (54%), Gaps = 21/686 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IV 70
            ++   GVG K +  L K      A  + + DLLFY P  +IDR    K++EIS     +
Sbjct: 8   SITYLPGVGPKKADILQKE-----AGISSYEDLLFYFPYKYIDRSRFYKVAEISGNMPYI 62

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G I    +    + +      +DGTG I L++F +    + + +    +  V GK  
Sbjct: 63  QLKGQILYFDTLGEGRSKRLVGKFSDGTGTIDLVWF-KGLNYVTDKYRPNTEYIVFGKPT 121

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEALSRLP-V 184
           +  +   + HP        D     +   Y+         L+    + +    LS L   
Sbjct: 122 EFGHTYNIPHPDIDSMEQADQVANGLTPFYNTSEKMKKSFLNSRAIQNLQYTLLSWLNWE 181

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE +  D+L++    S+ EA   IH P  A        A+ RL +DEL   Q+ +L   
Sbjct: 182 LPETLSPDVLKRIHMMSMTEAMRNIHFPESAA---KLRDAQLRLKFDELFFIQLNILRTA 238

Query: 245 KQFKKE-IGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
              K +  GI     G          +PF  T +Q+  +++I  DM    +M R+LQGDV
Sbjct: 239 SVRKLKLKGIVFPTVGHYFNTFYKEYLPFELTNAQKRVVREIRIDMGSGRQMNRLLQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLV L++M  A++   QA +MAP  ILA QHY  I  + ++  + V ++TG+  + 
Sbjct: 299 GSGKTLVGLLSMLLAIDNHCQACMMAPTEILATQHYATIMGFLKDMDVKVALLTGSTKKK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAP 421
            R K L  IA G+  I+IGTHAL ++++ +  L L I+DEQHRFGV+QR +L  + A  P
Sbjct: 359 ERDKILPAIASGEIQIVIGTHALIEETVVFSSLGLAIIDEQHRFGVEQRSRLWTKNAIVP 418

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           HVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N+  ++ E L+  + +
Sbjct: 419 HVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTLHRYDNKKAQLYEFLRKEIQK 478

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++ Y + P IE  ++ +++ +   F +  E F    + ++HGRM   DK++ M  F +G
Sbjct: 479 GRQVYVVYPLIEGNEKLDYKDLEAGFETFKEVFPEYKVCMVHGRMKAADKDTEMQKFISG 538

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S CIL+    L
Sbjct: 539 EAQILMATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILVSSYKL 598

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLEIA 659
           S ++  RL ++ N+ +GF IAE DL+ R  G++ G +QSG      IA       +L+ A
Sbjct: 599 SNDTRKRLEIMVNSTNGFEIAEADLRLRGHGDLEGTRQSGEGIDLKIADLAADGQILQYA 658

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685
           R  A+ +L +DP+L S + + +   L
Sbjct: 659 RDIAQGVLDEDPELLSEQHRILSERL 684


>gi|295425211|ref|ZP_06817914.1| DNA helicase RecG [Lactobacillus amylolyticus DSM 11664]
 gi|295064987|gb|EFG55892.1| DNA helicase RecG [Lactobacillus amylolyticus DSM 11664]
          Length = 679

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 220/685 (32%), Positives = 361/685 (52%), Gaps = 23/685 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +  L      G+       DLLFY P  + D      + +I +
Sbjct: 4   NALFAPVTDIKGVGTKTAANL------GSLGIYSIYDLLFYFPFRY-DELQTLPLDQIMD 56

Query: 67  ERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            + V + G ++          K+      L      + + FF +    LKN    G+++ 
Sbjct: 57  GQKVLLKGIVATEPFLTRFGYKKSRLSFKLRIDHDIVMVNFFNQ--PWLKNKVEIGKEVA 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLP 183
           V GK    +  +           ++  N   +  +Y +   +       +I  A+   L 
Sbjct: 115 VYGKYNVARQSLSAFK-----FVAEKENDSGMAPIYPVNKHVKQKKLVGLINFAIDNYLD 169

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + I   + +K    +  E  + +H+P+   + +     +    + E    Q+ L L+
Sbjct: 170 QVKDIIPAKVREKYRLLTDQEIISKMHHPKNGNEAQLA---KRSAIFREFFIFQMQLALL 226

Query: 244 RKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
             Q  +   G     + K   K+  ++PF  +  Q+ A+ +I  D+ QK +M R+LQGDV
Sbjct: 227 TSQSNEHNTGEAKKYDLKAIAKLTASLPFELSADQKQAVNEIYADLFQKRQMRRLLQGDV 286

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA+ A+ AA+ AG QA +M P  ILA QH+  I +  +   + V ++TGN    
Sbjct: 287 GSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFNKIDQLLRPLGVRVALLTGNTKTL 346

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            RR+    +  G  +++IGTHAL Q ++ +  L LVI+DEQHRFGV QR  L  K   P 
Sbjct: 347 ERREIYRELTDGTINVVIGTHALIQKNVIFKNLGLVIIDEQHRFGVGQRQALINKGECPD 406

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L MTATPIPRTL LT  G++ +S+I   PAGRKPI +     +++D V   ++  L+ G
Sbjct: 407 ILAMTATPIPRTLALTVYGEMSVSEIRHLPAGRKPIISSWQTSSQMDSVYRLMREQLAAG 466

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
            + Y + P I E +  + ++  E    L   F   ++ ++HG+M    K+ +M  F  G 
Sbjct: 467 FQIYAVTPLISESETLDLKNAEELHQKLSHDFPDQNVVLLHGQMPGPKKDEIMADFAAGE 526

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ +  P  +
Sbjct: 527 IDILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCVFVADPK-T 585

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R+ ++ +T DGF +AEEDLK R EG++ G  QSG+P+F +     +   L +A+K
Sbjct: 586 DSGKARMKIIASTNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGNVVNNYQTLVVAQK 645

Query: 662 DAKHILTQDPDLTSVRGQSIRILLY 686
           +AK ++  DP LT+   Q+++ +L+
Sbjct: 646 EAKALVQADPKLTAADHQTLKEILH 670


>gi|121634295|ref|YP_974540.1| putative DNA helicase [Neisseria meningitidis FAM18]
 gi|120866001|emb|CAM09738.1| putative DNA helicase [Neisseria meningitidis FAM18]
 gi|325131701|gb|EGC54406.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M6190]
 gi|325137717|gb|EGC60294.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis ES14902]
          Length = 680

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 240/666 (36%), Positives = 362/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAALGGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTATETLEQLQTALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|332881843|ref|ZP_08449486.1| ATP-dependent DNA helicase RecG [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332680187|gb|EGJ53141.1| ATP-dependent DNA helicase RecG [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 698

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 235/683 (34%), Positives = 371/683 (54%), Gaps = 21/683 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-I 69
             +    GVG + +  L               DLL+  P   IDR     I E++ +   
Sbjct: 7   QDIKFLPGVGPQRAKLL-----GDELQIRTLHDLLYTFPYKHIDRTRLYYIHELTADMPY 61

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           V I G I    +    ++R       DG G + L++F    + + + +       V G+ 
Sbjct: 62  VQIRGQILSFDTEGEGRKRRLVAHFTDGQGVVDLIWFN-GIKYVLSAYKTRTDYIVFGRP 120

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP-----TGLSVDLFKKIIVEALSRLPV 184
                RI + HP     +   +N   ++  Y+        GL+    +        RL  
Sbjct: 121 SVFNGRINIAHPDVDKADELRLNTMGLQPYYTTTDKMKRAGLNSRSIEHFTATLFERLDA 180

Query: 185 -LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-L 242
            +PE +   L+   +  S+ EA   +H P  A+D      A+ RL ++EL   Q+ ++  
Sbjct: 181 GIPETLPPYLVSSLNLVSLDEALRHVHYPTSAEDL---RKAQFRLKFEELFYIQLNIIKY 237

Query: 243 MRKQFKKEIGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            R++ +K  G      G++       N+PF  T +Q+  I++I QDM    +M R+LQGD
Sbjct: 238 ARERRQKYRGYVFVRVGELFHTFYEKNLPFELTGAQKRVIREIRQDMGSGRQMNRLLQGD 297

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVAL+++  A++ G QA IMAP  ILA+QHY   +       + VE++TG +  
Sbjct: 298 VGSGKTLVALMSILIALDNGFQACIMAPTEILAEQHYVTFQNLLFGMPVRVELLTGTVKG 357

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATA 420
             R+  L+ +  G+  I++GTHA+ +D++ +  L +V++DEQHRFGV QR +L  + +  
Sbjct: 358 KRRQAVLDGLKDGEVRILVGTHAVLEDTVLFKSLGMVVIDEQHRFGVAQRARLWTKNSNP 417

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    NR + +   L+  L+
Sbjct: 418 PHVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTIHQFDNRRESLYRGLRSQLN 477

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
           EG++AY + P I+E ++ + +++ E +  L        I+ +HG+M   +KE+ M  F +
Sbjct: 478 EGRQAYVVYPLIKESEKMDIKNLEEGYEQLCRDLPEYKISRVHGKMKAAEKEAEMQDFIS 537

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L+ATTVIEVG++V +AS+++IENAE FGLAQLHQLRGRVGRG + S CIL+    
Sbjct: 538 GKTQILVATTVIEVGVNVPNASVMVIENAERFGLAQLHQLRGRVGRGADQSYCILVTKYQ 597

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEI 658
           LS ++  R+ ++  T DGF IAE DLK R  G++ G +QSG+     +A       +L++
Sbjct: 598 LSADTRKRIQIMTETNDGFEIAEADLKLRGPGDLEGTQQSGVSFTLRLANLARDGQVLQL 657

Query: 659 ARKDAKHILTQDPDLTSVRGQSI 681
           AR+ A+ +L  DP   + +   +
Sbjct: 658 ARETAEKVLDDDPHCAASKNDIL 680


>gi|194290671|ref|YP_002006578.1| ATP-dependent DNA helicase recg [Cupriavidus taiwanensis LMG 19424]
 gi|193224506|emb|CAQ70517.1| ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG 19424]
          Length = 730

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 246/686 (35%), Positives = 371/686 (54%), Gaps = 38/686 (5%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE----ERIVTITGYISQHSS 81
            L+K+         R +DL+ + P  + D      I+E            + G +   + 
Sbjct: 47  RLAKL------GLRRPVDLVLHLPMRYEDETTVVPIAEAIHRAGLGLPAQVEGEVVS-NE 99

Query: 82  FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
              + RR   + L D +GE+TL F        + +  EG ++ V G+++       MVHP
Sbjct: 100 VTFRPRRQLVVKLADDSGELTLRFLNFYGSQTRQM-AEGVRLRVRGEVRGGFFGAEMVHP 158

Query: 142 HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ----KK 197
                 + +     +  VY    G+     +K I  AL+R P LPE + + +LQ    + 
Sbjct: 159 TVRPVLAGEALPDRLTPVYPSTAGIPQAYLRKAIGGALARTP-LPETLPQAVLQGPLARL 217

Query: 198 SFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
               +AE   ++H P   +      + + PA +R+ +DELLA QI+L       + +   
Sbjct: 218 QLRPLAECLRLLHAPPPQESEAALADRSHPAWQRVKFDELLAQQISLRRAHAARRDKTAP 277

Query: 254 PINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            +   EG +  + L  +PF  T +Q+  + +I  DM+  + M R+LQGDVGSGKT+VA +
Sbjct: 278 TMPRREGGLLTRFLAALPFRLTGAQQRVVGEIAADMTLPHPMHRLLQGDVGSGKTIVAAL 337

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           A   A++AG QA +MAP  ILA+QH+  +  + +   + V  + G+     +R A+ R+ 
Sbjct: 338 AACQAIDAGYQAALMAPTEILAEQHFRKLSAWLEPLGVPVAWLAGSQKAREKRHAVARVE 397

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-------------T 419
            G+A ++IGTHAL QD++++ KL L +VDEQHRFGV QRL L  KA             T
Sbjct: 398 SGEAQLVIGTHALIQDTVRFAKLGLSVVDEQHRFGVAQRLALRGKAGVAEAPAAISAAET 457

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R+    
Sbjct: 458 VPHQLMMSATPIPRTLAMTYYADLDVSVIDELPPGRTPIVTRLVNDERRDEVIGRIHHAA 517

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           +EG++ YW+CP IEE +    ++ VE + +L        + ++HGR+   +K +VMD F 
Sbjct: 518 AEGRQVYWVCPLIEESEALQLQTAVETYETLVAALPDLRVGLVHGRLPPAEKAAVMDDFS 577

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               ++L+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  
Sbjct: 578 ANRLQVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAESVCLLMYQA 637

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS  +  RL+ ++ T DGF IA  DL+ R  GE LG +QSG      A  +    L+E 
Sbjct: 638 PLSPTARERLATMRETTDGFEIARRDLEIRGPGEFLGARQSGEAMLRFADLQTDAWLVEY 697

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRIL 684
           A+  A+ +L   P+  +V     R L
Sbjct: 698 AQAAAELMLAHYPE--AVEAHLSRWL 721


>gi|59800577|ref|YP_207289.1| hypothetical protein NGO0117 [Neisseria gonorrhoeae FA 1090]
 gi|194097746|ref|YP_002000787.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae NCCP11945]
 gi|239998249|ref|ZP_04718173.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 35/02]
 gi|240015874|ref|ZP_04722414.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA6140]
 gi|240114966|ref|ZP_04729028.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID18]
 gi|240117250|ref|ZP_04731312.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID1]
 gi|240124998|ref|ZP_04737884.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-92-679]
 gi|260441218|ref|ZP_05795034.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae DGI2]
 gi|268594104|ref|ZP_06128271.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 35/02]
 gi|268600632|ref|ZP_06134799.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID18]
 gi|268602945|ref|ZP_06137112.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID1]
 gi|268683583|ref|ZP_06150445.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-92-679]
 gi|291044555|ref|ZP_06570264.1| ATP-dependent DNA helicase recG [Neisseria gonorrhoeae DGI2]
 gi|59717472|gb|AAW88877.1| putative DNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|193933036|gb|ACF28860.1| RecG [Neisseria gonorrhoeae NCCP11945]
 gi|268547493|gb|EEZ42911.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 35/02]
 gi|268584763|gb|EEZ49439.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID18]
 gi|268587076|gb|EEZ51752.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID1]
 gi|268623867|gb|EEZ56267.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-92-679]
 gi|291011449|gb|EFE03445.1| ATP-dependent DNA helicase recG [Neisseria gonorrhoeae DGI2]
 gi|317163533|gb|ADV07074.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 680

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 239/666 (35%), Positives = 362/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLKLPRLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAALRGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + + +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALRQALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVCLFGSLRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPEPNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAGESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|329926589|ref|ZP_08281002.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. HGF5]
 gi|328939130|gb|EGG35493.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. HGF5]
          Length = 683

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 223/661 (33%), Positives = 362/661 (54%), Gaps = 13/661 (1%)

Query: 29  KIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR 88
           K         +   DLL Y+P  + D   R  +SE+ +   +TI   I+     Q   R+
Sbjct: 20  KEGELHAFGVSTVKDLLEYYPFRYEDYRLR-SLSEVKDGDKITIQAKIASVPVLQRYGRK 78

Query: 89  -PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN 147
                 +       T  +F R    LK+    GR+I +TGK  + + ++ +    +   +
Sbjct: 79  SRLTCKMLAENWMFTATWFNR--HFLKDQLTAGREIVLTGKWDQRRMQLTVSESEF--PD 134

Query: 148 SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAF 206
                   ++ VYS+   ++    +K + +AL +   ++PE + + LL+K        A 
Sbjct: 135 KGAFRSGTLQPVYSIGGKITQSWIRKTMGQALEQYGEMIPEILPQSLLRKYDLMPRKAAI 194

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKI 265
             IH P  +++ +     R R+ Y+EL   Q+ +   R   + +  G+    +    ++ 
Sbjct: 195 MTIHQPVDSREGQE---GRRRMVYEELFLFQLKMQAFRALNRGRMDGVVHTADNATIREF 251

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           +R+ PF  T +Q+    +IL DM     M R+LQGDVGSGKT+VA IA+   V +G Q  
Sbjct: 252 VRSFPFELTDAQKKVELEILHDMRSPYCMNRLLQGDVGSGKTIVAAIALFTTVRSGFQGA 311

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +M P  ILA+QH   ++K  +   I V ++TG++    R+  L  +  G   I++GTHAL
Sbjct: 312 LMVPTEILAEQHMRSLQKLFEPFGITVGLLTGSVTGKKRKDLLASLQMGLTDIVVGTHAL 371

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            QD + + +L LV+ DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ GD+D+
Sbjct: 372 IQDDVYFRELGLVVTDEQHRFGVNQRSVLRRKGYNPDVLTMTATPIPRTLAITAFGDMDV 431

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S ++E+P GR PI T  +    +D V+  +   +++G++AY I P IEE  + + ++ ++
Sbjct: 432 STLSERPKGRIPITTYWVKHELMDRVLGFISREVNQGRQAYLIAPLIEESDKLDVQNAID 491

Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               + + F + S+ ++HGRM+  +K+ VM  F +   +LLI+TTV+EVG+DV +A+++I
Sbjct: 492 LHVQMQQAFPAYSVGLLHGRMTPAEKDEVMRQFYSNEVQLLISTTVVEVGVDVPNATLMI 551

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ FGL+QLHQLRGRVGRG+  S C+L+  P  S+    R+ V+  TEDGF ++  D
Sbjct: 552 IMDADRFGLSQLHQLRGRVGRGQHASYCVLVADPK-SEVGQERMQVMTETEDGFEVSRRD 610

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           L+ R  G+  G KQSG+P+F +A       ++E AR DA  +++     TS   + +R  
Sbjct: 611 LELRGPGDFFGTKQSGLPEFRLADMVADFKVVEEARGDAAALVSDSSFWTSPEYEPLRDF 670

Query: 685 L 685
           L
Sbjct: 671 L 671


>gi|94989151|ref|YP_597252.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS9429]
 gi|94993043|ref|YP_601142.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS2096]
 gi|94542659|gb|ABF32708.1| ATP-dependent DNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94546551|gb|ABF36598.1| ATP-dependent DNA helicase recG [Streptococcus pyogenes MGAS2096]
          Length = 671

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 242/672 (36%), Positives = 374/672 (55%), Gaps = 30/672 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L AP+S  +G G K +    K+      +     DLL Y+P  + D      + ++ +  
Sbjct: 3   LTAPMSNLKGFGPKSAEKFQKL------DIYTVEDLLLYYPFRYEDF-KSKSVFDLVDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      L  G   + + FF +    L +    G+++ V 
Sbjct: 56  KAVITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQ--PYLADKIELGQEVAVF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK    K+ I  +    +    +D     ++ VY +  G+S     K I  A      L 
Sbjct: 114 GKWDATKSAITGMK---VLAQVEDD----MQPVYRVAQGISQSTLIKAIKSAFEIDAHLE 166

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
             E +   LL+K      ++A   +H P   KD      A  R+ ++EL   Q+ L +++
Sbjct: 167 LKENLPATLLEKYRLMGRSQACLAMHFP---KDITEYKQALRRIKFEELFYFQMNLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E   +PI       +  + ++PF  T +Q+ ++ DIL DMS    M R+LQGDVG
Sbjct: 224 AENKSETNGLPILYSKHAMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A ++M AA  AG Q+ +M P  ILA+QHY  +++      + + I+T  M  A 
Sbjct: 284 SGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYISLQELF--PDLSIAILTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R  L  IA+G   +I+GTHAL QDS+QY+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 KRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++  V+E +K  L +  
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKDA 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F   + +A++HGRM + +K++ M  FK+  
Sbjct: 462 QVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVALVHGRMKNDEKDARMQDFKDKK 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  +
Sbjct: 522 SHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGYKQSYAVLVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +   R++++  T DGF++AE DLK R  GEI G +QSG+P+F +A       +LE ARK
Sbjct: 581 DSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILTQDPDL 673
            +  I++ DP+ 
Sbjct: 641 VSAAIVS-DPNW 651


>gi|301311100|ref|ZP_07217029.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 20_3]
 gi|300831163|gb|EFK61804.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 20_3]
          Length = 698

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 246/686 (35%), Positives = 375/686 (54%), Gaps = 21/686 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IV 70
            ++   GVG K +  L K      A  + + DLLFY P  +IDR    K++EIS     +
Sbjct: 8   SITYLPGVGPKKADILQKE-----AGISSYEDLLFYFPYKYIDRSRFYKVAEISGNMPYI 62

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G I    +    + +      +DGTG I L++F +    + + +    +  V GK  
Sbjct: 63  QLKGQILYFDTLGEGRSKRLVGKFSDGTGTIDLVWF-KGLNYVTDKYRPNTEYIVFGKPT 121

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEALSRLP-V 184
           +  +   + HP        D     +   Y+         L+    + +    LS L   
Sbjct: 122 EFGHTYNIPHPDIDSMEQADQVANGLTPFYNTSEKMKKSFLNSRAIQNLQYTLLSWLNWE 181

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE +  D+L++    S+ EA   IH P  A        A+ RL +DEL   Q+ +L   
Sbjct: 182 LPETLSPDVLKRIHMMSMTEAVRNIHFPESAA---KLRDAQLRLKFDELFFIQLNILRTA 238

Query: 245 KQFKKE-IGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
              K +  GI     G          +PF  T +Q+  +++I  DM    +M R+LQGDV
Sbjct: 239 SVRKLKLKGIVFPTVGHYFNTFYKEYLPFELTNAQKRVVREIRIDMGSGRQMNRLLQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLV L++M  A++   QA +MAP  ILA QHY  I  + ++  + V ++TG+  + 
Sbjct: 299 GSGKTLVGLLSMLLAIDNHCQACMMAPTEILATQHYATIMGFLKDMDVKVALLTGSTKKK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-P 421
            R K L  IA G+  I+IGTHAL ++++ +  L L I+DEQHRFGV+QR +L  K T  P
Sbjct: 359 ERDKILPAIASGEIQIVIGTHALIEETVVFSSLGLAIIDEQHRFGVEQRSRLWMKNTIVP 418

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           HVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N+  ++ E L+  + +
Sbjct: 419 HVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTLHRYDNKKAQLYEFLRKEIQK 478

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++ Y + P IE  ++ +++ +   F +  E F    + ++HGRM   DK++ M  F +G
Sbjct: 479 GRQVYVVYPLIEGNEKLDYKDLEAGFETFKEVFPEYKVCMVHGRMKAADKDTEMQKFISG 538

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S CIL+    L
Sbjct: 539 EAQILMATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILVSSYKL 598

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLEIA 659
           S ++  RL ++ N+ +GF IAE DL+ R  G++ G +QSG      IA       +L+ A
Sbjct: 599 SNDTRKRLEIMVNSTNGFEIAEADLRLRGHGDLEGTRQSGEGIDLKIADLAADGQILQYA 658

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685
           R  A+ +L +DP+L S + + +   L
Sbjct: 659 RDIAQGVLDEDPELLSEQHRILSERL 684


>gi|260753801|ref|YP_003226694.1| helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258553164|gb|ACV76110.1| helicase domain protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 692

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 282/708 (39%), Positives = 417/708 (58%), Gaps = 24/708 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA   + +GVG      L K         TR  DLLFY PS  + R     
Sbjct: 1   MRPDILNPLFAETESLKGVGSALLKPLKK------RQLTRLKDLLFYLPSGQMRRVKSDH 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFE 119
           I+        T+   ++         R P++IL  D  G +I LL+F   +   + +   
Sbjct: 55  INAKDVG--ATVILTLTAKEYRHPSGRGPFRILAEDPFGGQIQLLWFGNHSSWARKLMPI 112

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V+GK+   + ++ +VHP  I   S++ + PL E +Y L  GL+     ++I +A 
Sbjct: 113 GETRLVSGKLDIYQEQLQIVHPSEIVPLSEENSIPLEETLYPLSDGLTHRRIGQLIRQAW 172

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            + P LPEWIE  LL+K  +PS  EA   IH             A+ R+ YDE+ A Q+A
Sbjct: 173 EKSPDLPEWIEPSLLKKHQWPSWREAVERIHQHPDD------RAAKLRIGYDEIFANQLA 226

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R   +++ G P+  +G +   +  N+PF PT +Q  ++ +I  DM Q + MLR+LQ
Sbjct: 227 LKLIRAANRRKRGFPLKGDGHLRDAL--NLPFQPTGAQRRSLAEIEGDMQQASPMLRLLQ 284

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT VAL ++  A EAG Q  ++AP  ILA+QH+E + +      + + ++TG  
Sbjct: 285 GDVGSGKTWVALHSLLIAAEAGYQGALLAPTEILARQHFETLSQQLAGLPVNIALLTGRD 344

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   L  +A G  H+++GTHA+FQ+ + Y  L L I+DEQHRFGV QR+ L +KA 
Sbjct: 345 KGKLRESTLMGLADGSIHLLVGTHAIFQEKVSYKNLGLAIIDEQHRFGVAQRMMLAEKAI 404

Query: 420 A-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH+L+MTATPIPR+L+LT+ G++D+S++ E P GR+P++T +I   +I E+I  L   
Sbjct: 405 HTPHLLVMTATPIPRSLMLTAHGEMDVSRLDEMPPGRQPVETRVISSRKIPEIIASLGRH 464

Query: 479 LSEGKKAYWICPQI------EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           ++EG ++YW+CP +      E+   +   +  +RF+ L +HF   + ++HG+M   +K+ 
Sbjct: 465 IAEGGQSYWVCPAVGEADIEEDFSPNAIAAAEQRFSLLQQHFGKKVGLVHGKMKPAEKDK 524

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VMD F  G   +L+ATTVIEVG++V +A+++II+ AE FGLAQLHQLRGRVGRG   S C
Sbjct: 525 VMDDFAAGKIAVLVATTVIEVGVNVPNATLMIIDQAERFGLAQLHQLRGRVGRGGGRSIC 584

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LL    L+  +  RL++++   DGF +AEEDL+ R  GEILG KQSG   F IA PE  
Sbjct: 585 LLLRSEELTSVARERLALIRECNDGFRLAEEDLRLRGSGEILGTKQSGESHFQIASPEDL 644

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             LL IA  DA+ ++ +D  L+  RGQ+ RI LYL++ +    F+R+G
Sbjct: 645 SELLPIANDDARLLVDRDGGLSGERGQAARIALYLFERDAGVSFLRSG 692


>gi|153855287|ref|ZP_01996453.1| hypothetical protein DORLON_02467 [Dorea longicatena DSM 13814]
 gi|149752286|gb|EDM62217.1| hypothetical protein DORLON_02467 [Dorea longicatena DSM 13814]
          Length = 677

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 243/670 (36%), Positives = 370/670 (55%), Gaps = 19/670 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             +   +G+G+K      KI      N     DL+ Y+P  +        ISE+ E++I 
Sbjct: 5   TDIGDLKGIGEKTKKLFEKI------NVHTVGDLIRYYPHGYDVYEEAVPISELEEDKIQ 58

Query: 71  TITGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           T+TG I          R     + + D TG + +++F  +   L+N    G  IT+ G++
Sbjct: 59  TVTGAIYGRVQVSGNSRMQVTTLHVKDLTGTLKVIWF--RMPFLRNTLSGGGVITLRGRV 116

Query: 130 KKLKNR-IIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
            + K   ++M HP   + +++ +     ++ VY L  GLS ++  K + +AL  L +  E
Sbjct: 117 VRKKTGDLVMEHPEMFYPSAKYEEKLHTLQPVYGLTAGLSNNMVMKAMKQALDGLDLTRE 176

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +   L  K        A   IH P   +D E    ARERL ++E L   +++  ++++ 
Sbjct: 177 ILPDSLRLKYGLAEYNYAVRGIHFP---EDKEVFYHARERLVFEEFLEFILSIRRLKEKN 233

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++             QK L N+PF  T +Q+   K+I +D+     M R++QGDVGSGKT
Sbjct: 234 ERLDNNYPMQSRPEVQKFLENLPFELTGAQQKVWKEIEKDLGSDKTMSRLVQGDVGSGKT 293

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRR 365
           +VA++A+  A   G Q  +MAP  +LA+QHYE I K  ++    I VE++TG+M    +R
Sbjct: 294 IVAVLALMNAAFNGYQGAMMAPTEVLARQHYENITKMFEDYDIPIKVELLTGSMTAKEKR 353

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           +A +RI  G A IIIGTHAL Q ++ Y  L LVI DEQHRFGV+QR     K   PHVL+
Sbjct: 354 RAYDRIECGLAKIIIGTHALIQGAVSYDNLGLVITDEQHRFGVKQRETFALKGGEPHVLV 413

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPRTL +   GD+DIS I E PA R PIK  ++     ++    +K  ++EG++ 
Sbjct: 414 MSATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVDTGYRNKAYNFMKKQIAEGRQC 473

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP +EE +     +V +   +L E       +A +HG+M    K+ +MD F     +
Sbjct: 474 YVICPMVEESETMEAENVTDYTVALQEEMGDQIQVACLHGKMKQAQKDDIMDRFGRNEIQ 533

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVGIDV +A++++IENAE FGLAQLHQLRGRVGRG+  S CI +     SK 
Sbjct: 534 ILVSTTVIEVGIDVSNATVMMIENAERFGLAQLHQLRGRVGRGKYQSYCIFMSASK-SKE 592

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL +L ++ DGF IA EDL+ R  G++ GI+QSG+  F +        +L++A + A
Sbjct: 593 TKERLDILNHSNDGFKIASEDLRLRGPGDLFGIRQSGLMNFKLGDIYQDAKILQMANEAA 652

Query: 664 KHILTQDPDL 673
             +  +D + 
Sbjct: 653 DQLTEEDEEW 662


>gi|58337584|ref|YP_194169.1| ATP-dependent DNA helicase RecG [Lactobacillus acidophilus NCFM]
 gi|58254901|gb|AAV43138.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
          Length = 678

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 219/683 (32%), Positives = 364/683 (53%), Gaps = 22/683 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +  L      G+       DLLFY P  + D      + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTAADL------GSLGIYSIYDLLFYFPFRY-DELQTLPLDQIMD 56

Query: 67  ERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            + V + G ++          K+      +      I + FF +    LKN    G++I 
Sbjct: 57  GQKVVLKGIVATEPFVSRFGYKKSRLSFKMRIDHEVIMVNFFNQ--PWLKNKIEIGQEIA 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           + GK    +  +      + F  +++ N   +  +Y +   +       +I  A+   L 
Sbjct: 115 IYGKYNVARQSLSA----FKFVAAKE-NDSGMAPIYPVNRHIKQKKLVSLIDLAIEEFLD 169

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + + + + Q+    +  E    +H+P+ + D E     +    + E    ++ L L+
Sbjct: 170 QVNDIVPEKIRQEYHLLNDREIITKMHHPKNSNDAE---IGKRSAIFREFFIFELQLALL 226

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            K+   ++G     + K    + +++PF  +  Q+  + +I  D+   N+M R+LQGDVG
Sbjct: 227 TKKDGNQLGYAKKYDLKEVANLTKSLPFELSDDQKHVVNEIFADLHSSNQMRRLLQGDVG 286

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   I V ++T N     
Sbjct: 287 SGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPFGIRVALLTSNTKTLE 346

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+    +  G  +++IGTHAL Q ++ + KL LVI+DEQHRFGV QR  L  K   P V
Sbjct: 347 RREIYRELTDGTINVVIGTHALIQKNVIFKKLGLVIIDEQHRFGVGQRQALINKGDNPDV 406

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL LT  GD+ +S+I   P+GRKPI +     +++ +V +R+   L +G 
Sbjct: 407 LAMTATPIPRTLALTVYGDMTLSEIHHLPSGRKPIISSWKTSSQMKDVYKRMHEQLDQGF 466

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I + +  + ++  E    L   F    + ++HG+M  + K+ +M +F +G  
Sbjct: 467 QIYAVTPLITDSETLDLKNAEELHEKLSHDFPDKKVVLLHGQMPGVKKDEIMSAFASGEI 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ T+VIEVG+DV +A+++II NA+ FGL+QLHQLRGR+GRGE  S C+ +  P  + 
Sbjct: 527 NILVTTSVIEVGVDVANANMMIIYNADRFGLSQLHQLRGRIGRGETQSYCVFIADPR-TD 585

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F +     + + L +A+K 
Sbjct: 586 TGKARMKIISATNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVAQKI 645

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
           A+ ++  DPDL     + ++ +L
Sbjct: 646 ARKLVNDDPDLLDPEHKILKQML 668


>gi|315221232|ref|ZP_07863155.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus F0211]
 gi|315189591|gb|EFU23283.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus F0211]
          Length = 690

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 242/692 (34%), Positives = 385/692 (55%), Gaps = 28/692 (4%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            +N L  PL+   GVG K +   +K+            DLL Y P  + D      + E+
Sbjct: 19  IMN-LHQPLTVLPGVGPKSAEKFTKL------GIESLQDLLLYFPFRYEDF-KSKNVLEL 70

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            +     I+G ++  ++ Q    +  ++      GE+ L   +     L +    G  I 
Sbjct: 71  EDGEKAVISGVVTTPANVQYYGYKRNRLRFTIKQGEVVLAVNFFNQPYLADKVEVGSTIA 130

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--L 182
           + GK  K K  +  +    I    +D     ++ VY +  G+S     K+I  A  +   
Sbjct: 131 IFGKWDKAKASLTGMK---ILAQVEDD----LQPVYRVAQGISQASLVKVIKTAFDQSLE 183

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            +L E + + LL++      ++A   +H P   KD      A  R+ ++EL   Q+ L +
Sbjct: 184 LLLEENLPQILLERYQLVERSQAVRAMHFP---KDLTEYKQALRRVKFEELFYFQMQLQV 240

Query: 243 MRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           ++ + K     + I  +  + +     +PF  T +QE ++ +ILQDM     M R+LQGD
Sbjct: 241 LKCETKDVSQGLIIPWQADLLENKKATLPFELTVAQERSLNEILQDMKSPAHMNRLLQGD 300

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA +AM A   AG Q+ +M P  ILA+QH++ + +     ++ + ++TG M  
Sbjct: 301 VGSGKTVVAGLAMYATYTAGLQSTLMVPTEILAEQHFDSLSQLF--PELRIILLTGGMKP 358

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A RR+ALE I  GQ  +I+GTHAL Q+S+ Y++L LVI+DEQHRFGV QR  L +K   P
Sbjct: 359 AERRQALEAIEVGQVDMIVGTHALIQESVIYHQLGLVIIDEQHRFGVGQRRILREKGNNP 418

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   +++ V++ L   L  
Sbjct: 419 DVLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLLKELQR 478

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
           G + Y I P IEE +  + ++ +     L  +F   + +A++HG+M   +K+++M  FK 
Sbjct: 479 GAQIYVISPLIEESEALDLKNAIALEKELKAYFGDKAHVALLHGKMKSDEKDAIMQDFKE 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P 
Sbjct: 539 GKTDILVSTTVIEVGVNVPNATVMLIMDADRFGLSQLHQLRGRVGRGNKQSYAVLVANPK 598

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +++   R+ ++  T DGF++AEEDLK R  GEI G +QSG+P+F +A       +LE A
Sbjct: 599 -TESGKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADILEDYPILEEA 657

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           RK A  I++  PD  +     I + L+L Q +
Sbjct: 658 RKVASQIVST-PDWRTNADWYI-VALHLEQQD 687


>gi|28378326|ref|NP_785218.1| ATP-dependent DNA helicase RecG [Lactobacillus plantarum WCFS1]
 gi|254556534|ref|YP_003062951.1| ATP-dependent DNA helicase RecG [Lactobacillus plantarum JDM1]
 gi|28271161|emb|CAD64066.1| ATP-dependent DNA helicase RecG [Lactobacillus plantarum WCFS1]
 gi|254045461|gb|ACT62254.1| ATP-dependent DNA helicase RecG [Lactobacillus plantarum JDM1]
          Length = 679

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 229/682 (33%), Positives = 373/682 (54%), Gaps = 23/682 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   ++T  GVG      L+++            DLL Y+P  + D      ++EI+++ 
Sbjct: 5   LSDAVATLSGVGPARQKGLAEL------GINTIADLLTYYPFRYEDL-QVKDVNEIADQE 57

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            VT+ G ++         R+  ++            + FF +    L      G+ + V 
Sbjct: 58  KVTLKGTVASEPVLARFGRKKNRLNFRLLIDHDVYMVTFFNQ--PYLMKQIETGQDLAVY 115

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVL 185
           GK    ++ +  +    I  N+ D  F  I   Y     +     +K+I +A     PV+
Sbjct: 116 GKWDATRSSLTGMK--IINPNNADSAFGSI---YPASKTVKQGTIQKMIKQAYELYAPVI 170

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            + +  +L  K       +  + +H P    D   ++ AR    Y+E L  Q+ + ++++
Sbjct: 171 TDIVPANLRAKYRLLPRRQMIHDMHFPASQAD---STAARRSATYEEFLLFQMQMQVLKQ 227

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
                 GI I  +    +  ++ +PF  T +Q+  + +I  D+     M R+LQGDVGSG
Sbjct: 228 TDATTNGIAIAYDNDRLKAFIKTLPFELTHAQKRVVNEICLDLKSPKHMNRLLQGDVGSG 287

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA I M AA+ AG QA +MAP  ILA+QH   + +   +T + V ++TG    A R+
Sbjct: 288 KTIVAAIVMYAAITAGYQAALMAPTEILAEQHANNLAQVFADTDVNVALLTGATKPAARK 347

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
             L  +A G+ +++IGTHAL QD + Y  L LVI DEQHRFGV QR    QK   P  L 
Sbjct: 348 TLLAALAAGEINLLIGTHALIQDGVTYANLGLVITDEQHRFGVNQRAAFRQKGGQPDALA 407

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S+I E PAGR+PI+T  +  N+ +  +  +   +  G +A
Sbjct: 408 MTATPIPRTLAITAYGEMDVSEIDELPAGRQPIQTTWVRSNQANSALSFVHQQIDNGSQA 467

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y + P IEE +  + ++      +L E+F +S  + ++HGRM   +K++VM +FK G  +
Sbjct: 468 YVVTPLIEESETLDVKNAEALSANLQEYFGASVKVGLLHGRMKPEEKDAVMAAFKAGDIQ 527

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LL++TTVIEVG+DV +A+I++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++ 
Sbjct: 528 LLVSTTVIEVGVDVKNATIMMIYDADRFGLAQLHQLRGRVGRGTKASYCILVADPK-NQQ 586

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++A++DL+ R  G++LG+KQSGMP+F +  P    ++L++A++DA
Sbjct: 587 GIERMQIMTQTTNGFVLAQKDLELRGAGDVLGVKQSGMPEFKVGDPIADLTVLQVAQQDA 646

Query: 664 KHILTQDPDLTSVRGQSIRILL 685
             I+ Q    +    +++   L
Sbjct: 647 HAIVQQPDWQSQPDNRALAAYL 668


>gi|313637341|gb|EFS02825.1| ATP-dependent DNA helicase RecG [Listeria seeligeri FSL S4-171]
          Length = 682

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 233/680 (34%), Positives = 381/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +S ++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSLVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKINVGETVTISGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
            K + +I           +++     +E VY L   L     +K    A       + E 
Sbjct: 119 DKGRAQITASKVKIGAVENEEE----LEGVYRLKGTLRNKTMQKYTRAAFDAYSSSIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  ++H P+   +      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPANLLEKYQLMDRLEAVRVLHFPKNNDEL---KQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF+ TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFALTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   + V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDVTVGLLTSSVKGKRRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSVDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVTQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    ++ VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLERVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYRPGLMHGKLLPADKEQIMRDFNDKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVXX 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H
Sbjct: 591 XRMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L + + + +  LL
Sbjct: 651 MIFEENMLENKQYEKLVALL 670


>gi|94311874|ref|YP_585084.1| ATP-dependent DNA helicase RecG [Cupriavidus metallidurans CH34]
 gi|93355726|gb|ABF09815.1| ATP-dependent DNA helicase [Cupriavidus metallidurans CH34]
          Length = 737

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 243/691 (35%), Positives = 376/691 (54%), Gaps = 41/691 (5%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE----ERIVTITGYISQH 79
           +  L+K+         R +DL+ + P  + D      I +            I G +   
Sbjct: 49  AARLAKL------GLRRSVDLVLHLPLRYEDETTLEPIRDAIHRAGIGLPAQIEGEVIS- 101

Query: 80  SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           +    + RR   + + D TGE+TL F        K +  EG ++ V G+I+       MV
Sbjct: 102 NEVTFRPRRQLVVKVADETGELTLRFLNFYGGQTKQM-AEGTRLRVRGEIRGGFFGAEMV 160

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ---- 195
           HP        +     +  VY    G+S    +K I  A+ R P +PE + + +L+    
Sbjct: 161 HPTVRAVTPGEPLPDRLTPVYPATAGISQAYLRKAIGGAMQRTP-MPETLPQAVLRGPLA 219

Query: 196 KKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           +   P + +   ++HNP + +      + + PA  R+ +DELLA QI+L   +   K++ 
Sbjct: 220 QLKLPPLIDCLRLLHNPPQQESEAALADRSHPAWVRIKFDELLAQQISLRRSQAARKEKN 279

Query: 252 GIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
              +    G +    L  +PF  T +Q+  +++I  DM++ + M R+LQGDVGSGKT+VA
Sbjct: 280 APSMPRRAGGLLTSFLGALPFRLTGAQQRVVEEIAADMARPHPMHRLLQGDVGSGKTIVA 339

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +A   A++AG QA +MAP  ILA+QH+  +  + +   + V  + G++    +R+A+ R
Sbjct: 340 ALAACQAIDAGYQAALMAPTEILAEQHFRKLSAWLEPLGVPVVWLAGSLKAKEKREAVAR 399

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT--------------- 415
              G+A ++IGTHAL QD++++ +L L +VDEQHRFGV QRL L                
Sbjct: 400 AESGEAKLVIGTHALIQDTVRFARLGLAVVDEQHRFGVAQRLALRGKAGEADQPGEPARP 459

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            ++   PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVIER
Sbjct: 460 AEEKVVPHQLMMSATPIPRTLAMTYYADLDVSVIDELPPGRTPIVTRLVNDARRDEVIER 519

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +    +EG++ YW+CP IEE +    ++ VE + +L        + ++HGR+   +K +V
Sbjct: 520 VHHAAAEGRQVYWVCPLIEESEALQLQTAVETYETLVAALPDLRVGLVHGRLPPAEKAAV 579

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           MD F     ++L+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+
Sbjct: 580 MDDFTANRLQVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAESVCL 639

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+Y  PLS  +  RL+ ++ T DGF IA  DL+ R  GE LG +QSG      A  E   
Sbjct: 640 LMYQAPLSPTARERLATMRETTDGFEIARRDLQIRGPGEFLGARQSGEAMLRFADLETDA 699

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
            L++ A++ A+ +L + P+  +V     R L
Sbjct: 700 WLVDYAQEAAELMLERYPE--AVEAHLSRWL 728


>gi|227878872|ref|ZP_03996777.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01]
 gi|256849792|ref|ZP_05555223.1| ATP-dependent DNA [Lactobacillus crispatus MV-1A-US]
 gi|262046963|ref|ZP_06019923.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus MV-3A-US]
 gi|227861506|gb|EEJ69120.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01]
 gi|256713281|gb|EEU28271.1| ATP-dependent DNA [Lactobacillus crispatus MV-1A-US]
 gi|260572945|gb|EEX29505.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus MV-3A-US]
          Length = 678

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 217/683 (31%), Positives = 367/683 (53%), Gaps = 22/683 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +  L      G+       DLLFY P  + D      + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTTAAL------GSLGIYSIYDLLFYFPFRY-DELQTLPLDQIMD 56

Query: 67  ERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            + V + G ++  +       K+      +      I + FF +    LKN    G+++ 
Sbjct: 57  GQKVMLKGIVATEAFVSRFGYKKTRLSFKMRIDHDVIMVNFFNQ--PWLKNKIEIGQEVA 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-P 183
           + GK    +  +      + F  +++ N   +  +Y +   +       +I  A+     
Sbjct: 115 IYGKYNVARQSLTA----FKFVAAKE-NDSGMAPIYPVNRHVKQKKLVDLINVAIDDFID 169

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + + + L Q+            +H+P+ + + E     +    + E    ++ L L+
Sbjct: 170 QVQDIVPEKLRQEYRLLKDQVIIEKMHHPKNSHEAELA---KRSAIFREFFIFELQLALL 226

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            +   K++G     +     ++ +++PF  +  Q+  + +I  DM    +M R+LQGDVG
Sbjct: 227 TRNDGKQMGYAKKYDLTEIAQLTKSLPFELSDDQKHVVNEIFADMHSDGQMRRLLQGDVG 286

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   + V ++TGN     
Sbjct: 287 SGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKTLE 346

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+    +  G  +++IGTHAL QDS+ + KL LVI+DEQHRFGV QR  L  K   P +
Sbjct: 347 RREIYRELTDGTINVVIGTHALIQDSVIFKKLGLVIIDEQHRFGVGQRQALINKGDQPDI 406

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +     +++ EV  +++  L++G 
Sbjct: 407 LAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQLNQGF 466

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I E +  + ++  E    L   F +  + ++HG+M    K+ +M +F  G  
Sbjct: 467 QIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFAAGEI 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ L  P  + 
Sbjct: 527 DILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-TD 585

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +   R+ ++ +T DGF +AEEDLK R EG++ G  QSG+P+F +     +   L +A+K+
Sbjct: 586 SGKARMKIIASTNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYDTLVVAQKE 645

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
           A+ ++  DPDL+    ++++ +L
Sbjct: 646 ARALVAADPDLSDPGHKALKQVL 668


>gi|261405809|ref|YP_003242050.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. Y412MC10]
 gi|261282272|gb|ACX64243.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. Y412MC10]
          Length = 683

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 223/661 (33%), Positives = 362/661 (54%), Gaps = 13/661 (1%)

Query: 29  KIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR 88
           K         +   DLL Y+P  + D   R  +SE+ +   +TI   I+     Q   R+
Sbjct: 20  KEGELHAFGVSTVKDLLEYYPFRYEDYRLR-SLSEVKDGDKITIQAKIASVPVLQRYGRK 78

Query: 89  -PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN 147
                 +       T  +F R    LK+    GR+I +TGK  + + ++ +    +   +
Sbjct: 79  SRLTCKMLAENWMFTATWFNR--HFLKDQLTAGREIVLTGKWDQRRMQLTVSESEF--PD 134

Query: 148 SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAF 206
                   ++ VYS+   ++    +K + +AL +   ++PE + + LL+K        A 
Sbjct: 135 KGTFRSGTLQPVYSIGGKITQSWIRKTMGQALEQYGEMIPEILPQSLLRKYDLMPRKAAI 194

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKI 265
             IH P  +++ +     R R+ Y+EL   Q+ +   R   + +  G+    +    ++ 
Sbjct: 195 MTIHQPVDSREGQE---GRRRMVYEELFLFQLKMQAFRALNRGRMDGVVHTADNATIREF 251

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           +R+ PF  T +Q+    +IL DM     M R+LQGDVGSGKT+VA IA+   V +G Q  
Sbjct: 252 VRSFPFELTDAQKKVELEILHDMRSPYCMNRLLQGDVGSGKTIVAAIALFTTVRSGFQGA 311

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +M P  ILA+QH   ++K  +   I V ++TG++    R+  L  +  G   I++GTHAL
Sbjct: 312 LMVPTEILAEQHMRSLQKLFEPFGITVGLLTGSVTGKKRKDLLASLQMGLTDIVVGTHAL 371

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            QD + + +L LV+ DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ GD+D+
Sbjct: 372 IQDDVYFRELGLVVTDEQHRFGVNQRSVLRRKGYNPDVLTMTATPIPRTLAITAFGDMDV 431

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S ++E+P GR PI T  +    +D V+  +   +++G++AY I P IEE  + + ++ ++
Sbjct: 432 STLSERPKGRIPITTYWVKHELMDRVLGFISREVNQGRQAYLIAPLIEESDKLDVQNAID 491

Query: 506 RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               + + F + S+ ++HGRM+  +K+ VM  F +   +LLI+TTV+EVG+DV +A+++I
Sbjct: 492 LHVQMQQAFPAYSVGLLHGRMTPAEKDEVMRQFYSNEVQLLISTTVVEVGVDVPNATLMI 551

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ FGL+QLHQLRGRVGRG+  S C+L+  P  S+    R+ V+  TEDGF ++  D
Sbjct: 552 IMDADRFGLSQLHQLRGRVGRGQHASYCVLVADPK-SEVGQERMQVMTETEDGFEVSRRD 610

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           L+ R  G+  G KQSG+P+F +A       ++E AR DA  +++     TS   + +R  
Sbjct: 611 LELRGPGDFFGTKQSGLPEFRLADMVADFKVVEEARGDAAALVSDSSFWTSPEYEPLRDF 670

Query: 685 L 685
           L
Sbjct: 671 L 671


>gi|22298277|ref|NP_681524.1| DNA recombinase [Thermosynechococcus elongatus BP-1]
 gi|22294456|dbj|BAC08286.1| DNA recombinase [Thermosynechococcus elongatus BP-1]
          Length = 804

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 242/702 (34%), Positives = 391/702 (55%), Gaps = 38/702 (5%)

Query: 2   RPSFLNPLFAPLSTFRGVGK--------KYSLFLSKIINCGNANETRFIDLLFYHPSSFI 53
           RP    PL   L T  G+G+        + +  L+K+            DL++Y P   I
Sbjct: 96  RP---RPLDQGLKTLHGIGEQLRCVVGDRTAAQLAKL------GLYTVADLIYYFPRDHI 146

Query: 54  DRHYRPKISEISEERIVTITGYISQHSSFQLQKR---RPYKILLNDGTGEITLLFFYRKT 110
           D   +  I ++     VT+ G + +   F   +       +I+L D TG+I L  FY   
Sbjct: 147 DYARQVPIRQLQAGETVTLVGQVRRCKCFTSPRNAKLTILEIILQDRTGQIRLTRFYAGA 206

Query: 111 EM--------LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-----PLIE 157
                      K ++     +  +G +K+ K  + +  P                   I 
Sbjct: 207 RYAQRGWQEQQKRLYAPQTLVAASGLVKQTKYGLTLEEPELEVLEHPGAEIDSLTIGRIV 266

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            +Y L  G+S D+ ++ +   L  +   P+ + + L Q      +  A   IH P    D
Sbjct: 267 PIYPLTEGVSPDVIRRAVARVLPLVQGYPDPLPQALCQHHQLIPLDTALRYIHFPP---D 323

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
               S AR RL +DE    Q+ LL  R+Q ++++ +P+  +G++ ++  + +PF  T +Q
Sbjct: 324 QTQLSLARRRLIFDEFFYLQLGLLQRRRQQQQQVSVPLKPQGELIEQFYQRLPFQLTGAQ 383

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           +  + +IL D+ +   M R+LQGDVGSGKT+VA+IA+ AAV++G Q  +MAP  +LA+QH
Sbjct: 384 QRVVAEILADLERPIPMNRLLQGDVGSGKTVVAVIALLAAVQSGYQGALMAPTEVLAEQH 443

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y  + ++     + VE++TG++  A RR+ L+++A G+  +++GTHAL Q+ +++ +L L
Sbjct: 444 YRKLFEWLTPLHVPVELLTGSVRTAKRRQILDQLATGELPVLVGTHALIQEGVRFQRLGL 503

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           V++DEQHRFGV QR KL  K   PHVL MTATPIPRTL LT  GD+++S+I E P GR+P
Sbjct: 504 VVIDEQHRFGVAQRAKLQAKGVLPHVLTMTATPIPRTLALTLHGDLEVSQIDELPPGRRP 563

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-- 515
           I+T I+         + ++  +++G++AY I P +EE ++ + +S +     L       
Sbjct: 564 IQTTILGRGDRCCAYDLIRREVAQGRQAYIILPLVEESEKLDLKSAIAEHQRLQTEIFPN 623

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HGRM+  +K++ + +F  G   +L+ATTV+EVG+DV +A++++IE+AE FGL+Q
Sbjct: 624 FRVGLLHGRMASSEKDATIQAFAQGELDILVATTVVEVGVDVPNATVMLIEHAERFGLSQ 683

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG + S C+LL +   +  +  RL+VL  ++DGF IAE DL+ R  GE+LG
Sbjct: 684 LHQLRGRVGRGAQQSYCLLLLNSARNDAAKQRLNVLAQSQDGFFIAEMDLRLRGPGEVLG 743

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            +QSG+P F +A        LE AR  A  ++ QDP+L +  
Sbjct: 744 TRQSGLPDFALASLVEDQDCLEAARSAASELIAQDPELRNYP 785


>gi|313632773|gb|EFR99739.1| ATP-dependent DNA helicase RecG [Listeria seeligeri FSL N1-067]
          Length = 682

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 233/680 (34%), Positives = 381/680 (56%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +S ++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSLVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKINVGETVTISGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
            K + +I           +++     +E VY L   L     +K    A       + E 
Sbjct: 119 DKGRAQITASKVKIGAVENEEE----LEGVYRLKGTLRNKTMQKYTRAAFDAYSSSIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  ++H P+   +      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPANLLEKYQLMDRLEAVRVLHFPKNNDEL---KQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF+ TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFALTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   + V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDVTVGLLTSSVKGKRRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSVDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    ++ VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLERVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYRPGLMHGKLLPADKEQIMRDFNDKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVXX 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H
Sbjct: 591 XRMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L + + + +  LL
Sbjct: 651 MIFEENMLENKQYEKLVALL 670


>gi|291538889|emb|CBL12000.1| ATP-dependent DNA helicase RecG [Roseburia intestinalis XB6B4]
          Length = 685

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 231/691 (33%), Positives = 360/691 (52%), Gaps = 17/691 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           +PL   +GVG K      KI            D+L ++P ++I       + E+ +    
Sbjct: 5   SPLREIKGVGAKTEELFHKI------GVYTVGDILLHYPRTYIQYPQAKHVDEVLDGEQA 58

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            + G I++    +  +     +      G  + L+++  +   +KN    G      GK+
Sbjct: 59  AVLGRITRTPVVRKVRTMQITVTTISEMGASLELVWY--RMPYMKNNLKVGSTYIFYGKV 116

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            K   R++M                +   VY+L  GLS +L  K +  AL    +  +++
Sbjct: 117 NKKNGRLVMEQAAMFTEEQYASMEQVFLPVYTLTNGLSNNLVTKTVRAALGDEHLFMDYL 176

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              + +K        A   IH P   +D E    AR RL +DE     +++   +++  K
Sbjct: 177 PHAIREKYGLCEYNYAIRQIHFP---EDMETLITARRRLVFDEFFLFILSMQYQKEKHVK 233

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E    +  E     +++  +P+  T +Q+ A+ D+ +DM  +  M R++QGDVGSGKT+V
Sbjct: 234 EKNEFVFAEDDFTDELIEQLPYELTNAQKKALADVKRDMRSETVMQRLIQGDVGSGKTIV 293

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRKA 367
           A +AMA     G Q+ IMAP  +LA+QHYE  +   +     I + ++TG+M    +R+A
Sbjct: 294 AFLAMADTAHNGYQSAIMAPTEVLARQHYESYQSMCEQFGLHIPIVLLTGSMTAKQKRRA 353

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            E +      +IIGTHAL Q+   Y  L LVI DEQHRFGV+QR     K T PHVL+M+
Sbjct: 354 YEALEVYSNAMIIGTHALIQEKAIYQNLALVITDEQHRFGVRQRETFAGKGTEPHVLVMS 413

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +   GD+DIS I E PA R PIK  ++      +    ++  + EG +AY 
Sbjct: 414 ATPIPRTLAIIIYGDLDISVIDEVPAKRLPIKNCVVDRRYRPKAYAFIEHEIREGHQAYV 473

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP +EE +     +V +    L E       I ++HG+M    K  +MD F     ++L
Sbjct: 474 ICPLVEESENMEAENVTDYAKRLREELPEDIVIGVLHGQMKAEQKNKIMDQFVKNEIQVL 533

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CI + +   SKNS 
Sbjct: 534 VSTTVVEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGDAQSYCI-MVNASDSKNSM 592

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL +L  + DGF IA EDLK R  G+  GI+QSG  +FL+A      S+L+ A ++ + 
Sbjct: 593 KRLDILNKSNDGFKIASEDLKLRGPGDFFGIRQSGEMQFLLADIYQDASVLQQASEEVQD 652

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
           +L  DP+L      +++  L ++  ++  + 
Sbjct: 653 LLATDPELCEEENINLQHYLEIFFEDQKSRL 683


>gi|295693180|ref|YP_003601790.1| ATP-dependent DNA helicase recg [Lactobacillus crispatus ST1]
 gi|295031286|emb|CBL50765.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus ST1]
          Length = 678

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 217/683 (31%), Positives = 366/683 (53%), Gaps = 22/683 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +  L      G+       DLLFY P  + D      + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTTAAL------GSLGIYSIYDLLFYFPFRY-DELQTLPLDQIMD 56

Query: 67  ERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            + V + G ++  +       K+      +      I + FF +    LKN    G+++ 
Sbjct: 57  GQKVMLKGIVATEAFVSRFGYKKTRLSFKMRIDHDVIMVNFFNQ--PWLKNKIEIGQEVA 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-P 183
           + GK    +  +      + F  +++ N   +  +Y +   +       +I  A+     
Sbjct: 115 IYGKYNVARQSLTA----FKFVAAKE-NDSGMAPIYPVNRHVKQKKLVDLINVAIDDFID 169

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + + + L Q+            +H+P+ + + E     +    + E    ++ L L+
Sbjct: 170 QVQDIVPEKLRQEYRLLKDQVIIEKMHHPKNSHEAELA---KRSAIFREFFIFELQLALL 226

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            +   K++G     +     ++ +++PF  +  Q+  + +I  DM    +M R+LQGDVG
Sbjct: 227 TRNDGKQMGYAKKYDLTEIAQLTKSLPFELSDDQKHVVNEIFADMHSDGQMRRLLQGDVG 286

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   + V ++TGN     
Sbjct: 287 SGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKTLE 346

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+    +  G  +++IGTHAL QDS+ + KL LVI+DEQHRFGV QR  L  K   P +
Sbjct: 347 RREIYCELTDGTINVVIGTHALIQDSVIFKKLGLVIIDEQHRFGVGQRQALINKGDQPDI 406

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +     +++ EV  +++  L++G 
Sbjct: 407 LAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQLNQGF 466

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I E +  + ++  E    L   F    + ++HG+M    K+ +M +F  G  
Sbjct: 467 QIYAVTPLITESETLDLKNAEELHEKLSHDFPDQKVVLLHGQMPGAQKDEIMAAFAAGEI 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG   S C+ L  P  + 
Sbjct: 527 NILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGRTQSYCVFLADPK-TD 585

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +   R+ ++ +T DGF +AEEDLK R EG++ G  QSG+P+F +     + + L +A+K+
Sbjct: 586 SGKARMKIIASTNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVAQKE 645

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
           A+ ++  DPDL+    ++++ +L
Sbjct: 646 ARALVAADPDLSDPGHKALKQVL 668


>gi|150009297|ref|YP_001304040.1| ATP-dependent DNA helicase RecG [Parabacteroides distasonis ATCC
           8503]
 gi|256841865|ref|ZP_05547371.1| ATP-dependent DNA helicase RecG [Parabacteroides sp. D13]
 gi|298376914|ref|ZP_06986868.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_19]
 gi|149937721|gb|ABR44418.1| ATP-dependent DNA helicase RecG [Parabacteroides distasonis ATCC
           8503]
 gi|256736759|gb|EEU50087.1| ATP-dependent DNA helicase RecG [Parabacteroides sp. D13]
 gi|298265898|gb|EFI07557.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_19]
          Length = 698

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 245/686 (35%), Positives = 375/686 (54%), Gaps = 21/686 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IV 70
            ++   GVG K +  L K      A  + + DLLFY P  +IDR    K++EIS     +
Sbjct: 8   SITYLPGVGPKKADILQKE-----AGISSYEDLLFYFPYKYIDRSRFYKVAEISGNMPYI 62

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            + G I    +    + +      +DGTG I L++F +    + + +    +  V GK  
Sbjct: 63  QLKGQILYFDTLGEGRSKRLVGKFSDGTGTIDLVWF-KGLNYVTDKYRPNTEYIVFGKPT 121

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEALSRLP-V 184
           +  +   + HP        D     +   Y+         L+    + +    LS L   
Sbjct: 122 EFGHTYNIPHPDIDSMEQADQVANGLTPFYNTSEKMKKSFLNSRAIQNLQYTLLSWLNWE 181

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE +  D+L++    S+ EA   IH P  A        A+ RL +DEL   Q+ +L   
Sbjct: 182 LPETLSPDVLKRIHMMSMTEAMRNIHFPESAA---KLRDAQLRLKFDELFFIQLNILRTA 238

Query: 245 KQFKKE-IGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
              K +  GI     G          +PF  T +Q+  +++I  DM    +M R+LQGDV
Sbjct: 239 SVRKLKLKGIIFPTVGHYFNTFYKEYLPFELTNAQKRVVREIRIDMGSGRQMNRLLQGDV 298

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLV L++M  A++   QA +MAP  ILA QHY  I  + ++  + V ++TG+  + 
Sbjct: 299 GSGKTLVGLLSMLLAIDNHCQACMMAPTEILATQHYATIMGFLKDMDVKVALLTGSTKKK 358

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAP 421
            R K L  IA G+  I+IGTHAL ++++ +  L L I+DEQHRFGV+QR +L  + A  P
Sbjct: 359 ERDKILPAIASGEIQIVIGTHALIEETVVFSSLGLAIIDEQHRFGVEQRSRLWMKNAIVP 418

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           HVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    N+  ++ E L+  + +
Sbjct: 419 HVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPIQTLHRYDNKKAQLYEFLRKEIQK 478

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           G++ Y + P IE  ++ +++ +   F +  E F    + ++HGRM   DK++ M  F +G
Sbjct: 479 GRQVYVVYPLIEGNEKLDYKDLEAGFETFKEVFPEYKVCMVHGRMKAADKDTEMQKFISG 538

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S CIL+    L
Sbjct: 539 EAQILMATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILVSSYKL 598

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLEIA 659
           S ++  RL ++ N+ +GF IAE DL+ R  G++ G +QSG      IA       +L+ A
Sbjct: 599 SNDTRKRLEIMVNSTNGFEIAEADLRLRGHGDLEGTRQSGEGIDLKIADLAADGQILQYA 658

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685
           R  A+ +L +DP+L S + + +   L
Sbjct: 659 RDIAQGVLDEDPELLSEQHRILSERL 684


>gi|167759036|ref|ZP_02431163.1| hypothetical protein CLOSCI_01383 [Clostridium scindens ATCC 35704]
 gi|167663443|gb|EDS07573.1| hypothetical protein CLOSCI_01383 [Clostridium scindens ATCC 35704]
          Length = 676

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 239/680 (35%), Positives = 369/680 (54%), Gaps = 26/680 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             +   +G+G+K      K+        +   DL+ Y+P  +        ISE+ E ++ 
Sbjct: 5   TSIKELKGIGEKTQKLFEKV------GVSTVGDLIRYYPRGYDVYEDPVPISEVEEGKVQ 58

Query: 71  TITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           T+ G I      Q+   R  ++    + D TG I  ++F  +   L+N    G KI + G
Sbjct: 59  TVAGAI--FGRVQVSGNRNMQVTTIHVKDLTGTIKAVWF--RMPFLRNTLAGGGKIILRG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           ++   K  + M HP   +   + +     ++ VY L  GLS ++  K + +ALS+L +  
Sbjct: 115 RVTSRKGGLAMEHPEIFYPAGKYEEKIHTLQPVYGLTAGLSNNVVAKAMHQALSQLDLTR 174

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +  +L  K        A   IH P   +D E    ARERL ++E L   +++  M+ +
Sbjct: 175 ETLPDELRLKYGLAEYNYAIRGIHFP---EDKEVFYHARERLVFEEFLEFILSIRKMKDK 231

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            ++     I        +++  +P+  TK+Q+    +I  DM+    M R++QGDVGSGK
Sbjct: 232 NERIENEYIVQRKPEVDELIGRLPYELTKAQKKVWDEIAHDMASDTAMSRLVQGDVGSGK 291

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII--VEIITGNMPQAHR 364
           T+VA++A+ +    G Q  +MAP  +LA+QHY+ I +  +   I   VE++TG+M    +
Sbjct: 292 TIVAVLALISVALNGYQGAMMAPTEVLARQHYDSITRLLEEYGIKIKVELLTGSMTAKEK 351

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R+A +RI  G A IIIGTHAL QD + Y  L LV+ DEQHRFGV+QR    +K   PHVL
Sbjct: 352 RRAYDRIECGYARIIIGTHALIQDRVYYDCLALVVTDEQHRFGVKQREAFARKGGMPHVL 411

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPRTL +   GD+DIS I E PA R PIK  ++           +K  + EG++
Sbjct: 412 VMSATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVETGYRKTAYAFMKKQVGEGRQ 471

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTC 542
            Y ICP +EE ++    +V++    L E     I +  +HGRM   +K+ +M+ F     
Sbjct: 472 CYVICPMVEESEQLEVENVLDYAAMLQEEMGKGIVVSCLHGRMRQAEKDDIMERFGRCEI 531

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L++TTVIEVGIDV +A++++IENAE FGLAQLHQLRGRVGRG+  S CI +     +K
Sbjct: 532 QILVSTTVIEVGIDVPNATVMMIENAERFGLAQLHQLRGRVGRGKHQSYCIFMSGSK-AK 590

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL++L  + DGF IA EDL+ R  G++ GI+QSGM  F +        +L++A + 
Sbjct: 591 ETRERLNILNESNDGFKIASEDLRLRGPGDLFGIRQSGMMDFKLGDVFQDAKVLQMANEA 650

Query: 663 AKHILTQDP----DLTSVRG 678
           A  +L  +     +L    G
Sbjct: 651 ADLLLNDENGWLKNLPKHEG 670


>gi|325982473|ref|YP_004294875.1| ATP-dependent DNA helicase RecG [Nitrosomonas sp. AL212]
 gi|325531992|gb|ADZ26713.1| ATP-dependent DNA helicase RecG [Nitrosomonas sp. AL212]
          Length = 679

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 230/663 (34%), Positives = 362/663 (54%), Gaps = 20/663 (3%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
             LS++           +DL+ + P  + D  +   I +  +   V + G I  H+   +
Sbjct: 9   EKLSRL------GIYNGLDLILHLPIRYEDETHLFPIGDAPQGHTVQVEGVII-HNEVVI 61

Query: 85  QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
           + RR     + D +G + + F    +  +K  +  G+++ + G+I+       MVHP   
Sbjct: 62  RPRRQLICRIEDSSGILVMRFVNFYSSQIK-TYAVGKRVRLLGEIRNGFFGAEMVHPKCR 120

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL---SRLPVLPEWIEKDLLQKKSFPS 201
              + +     +  +Y    GL      KII + L     +  L E +   +++K     
Sbjct: 121 IVRAGESLAHSMTPIYPTTAGLMQKTLAKIIKQGLHNAQMVQALIETVPDKIIRKYRLKG 180

Query: 202 IAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
             E+   +H+P   +  E     T PA  R+ +DELLA Q+++ L  +Q +      +  
Sbjct: 181 FEESVMCLHHPSPEESIEALQTRTHPAWRRIKFDELLAQQLSMRLHYRQRRSHTAPVLEQ 240

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +  +A+++L  + F  T +Q     +I  D++    M R+LQGDVGSGKT+VA +A   A
Sbjct: 241 KNILAKQLLAQLGFELTSAQLKVYAEIGHDLTVAYPMQRLLQGDVGSGKTIVAALAALQA 300

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           +E G QA IMAP  ILA+QH+  +  + +   + V  ++G M +  ++  +++I  G A 
Sbjct: 301 IENGFQAAIMAPTEILAEQHFMKLSAWLEPLGVHVAWLSGGMRKKQKQAEMDKIESGVAQ 360

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPR 433
           +++GTHALFQ  + +++L L I+DEQHRFGV QRL L  K       PH L+M+ATPIPR
Sbjct: 361 LVVGTHALFQYQVVFHQLGLAIIDEQHRFGVHQRLALRMKGAQSDLMPHQLMMSATPIPR 420

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL ++   D+D+S I + P GR P+ T +I   R DE+I R+     + ++ YW+CP IE
Sbjct: 421 TLSMSYFADLDVSIIDQLPPGRSPVITKLIADRRRDEIIARIHFACQQDRQVYWVCPLIE 480

Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E +    ++ +E +  L + F   ++ ++HGR+S  +K  +M  FK G  +LL+ATTVIE
Sbjct: 481 ESEALQLQAAMETYQHLRKIFPELNVGLVHGRLSPQEKAEIMLLFKEGKIQLLVATTVIE 540

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV +AS+++IENAE  GL+QLHQLRGRVGRG + S CILL+  PLS+ +  RL ++ 
Sbjct: 541 VGVDVPNASLMVIENAERMGLSQLHQLRGRVGRGSDASICILLFQQPLSEIARKRLRIIF 600

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
              DGF IA +D++ R  GE LG +QSGMP    A  E    LLE A   A  +L   P+
Sbjct: 601 EHTDGFEIAHQDMQLRGPGEFLGARQSGMPMLRFADLEQDGELLEAALDSANEMLNNYPE 660

Query: 673 LTS 675
           L  
Sbjct: 661 LAQ 663


>gi|294102390|ref|YP_003554248.1| ATP-dependent DNA helicase RecG [Aminobacterium colombiense DSM
           12261]
 gi|293617370|gb|ADE57524.1| ATP-dependent DNA helicase RecG [Aminobacterium colombiense DSM
           12261]
          Length = 695

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 230/681 (33%), Positives = 368/681 (54%), Gaps = 24/681 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
              +   +GVG      L+++            DL+ + P  + DR     ++++  E  
Sbjct: 8   QQSVRYIKGVGAVREKQLNRL------GIQTAEDLILFFPRRYEDRRGLTSLAKLRPETT 61

Query: 70  VTITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           V++   +      Q  ++    I  L+ DG   +  ++F RK   L+ +   G+++ + G
Sbjct: 62  VSLLVRVVAVEKRQTSRKGFVIIQGLMTDGQDFLRAVWFNRKG--LERLLTPGKEVALYG 119

Query: 128 KIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            I      + + +P +      +   +   +  +Y L  GL    F+K+I   L   P +
Sbjct: 120 PIDWKYGHLQITNPEFEIIEEGESPESIGQVVPIYPLTAGLHQRWFRKLIRFCLDNSPFI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR- 244
            + +   L  K +FP + ++   +H P+     E    AR+RLAY EL   Q  + L R 
Sbjct: 180 FDPLPDFLRLKHAFPPLYDSILEMHYPQGR---ESWKKARDRLAYQELFVLQTGMALRRG 236

Query: 245 KQFKKEIGIPINVEGKIAQ--KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           ++ +     PI  E    +   +    P+  T++Q+    +I QDM+    M R+LQGDV
Sbjct: 237 ERSRLAEKAPILPESGRLKERFLKEIFPYPLTEAQKKVSLEISQDMALNIPMHRLLQGDV 296

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT VA++A+  AVE G Q   MAP  ILAQQHY  +  + +   + V ++ G++   
Sbjct: 297 GSGKTAVAVLALLQAVEGGYQGAFMAPTEILAQQHYYRLHSFLEPLGVSVVLLIGSLKNR 356

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-- 420
            R   L++I+ G+AH+++GTHALF D + +  L   ++DEQHRFGV Q+  L  K     
Sbjct: 357 ARELTLQKISTGEAHVVVGTHALFSDPVTFSNLGFAVIDEQHRFGVLQKNALRAKGANEG 416

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH+L+MTATPIPRTL L+  GD+ +S I E P GR PI+T  +       +   ++  
Sbjct: 417 QAPHILVMTATPIPRTLTLSVYGDLSVSVIDEMPPGRTPIQTRWLKKKEEGRLWAFIRER 476

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            S  ++ YW+CP I+E +  +  SV ER+  L + F   ++ ++HG++   +KE++M SF
Sbjct: 477 CSARERIYWVCPLIDESETLSVASVTERYEYLKKLFPDLNVGLLHGQLPSSEKETIMRSF 536

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G   L+++TTVIEVG+DV  A++++IE+A+ FGL+QLHQLRGRVGRG   S C+LL +
Sbjct: 537 ARGHLDLIVSTTVIEVGVDVPQATVMVIEDADRFGLSQLHQLRGRVGRGGNQSYCVLLSN 596

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           P  ++    RL V+  T DGF IAE DL+ R  GE+ G++Q G+  F +A      SLL+
Sbjct: 597 PT-TREGVERLKVMCATTDGFKIAEADLRLRGPGEVCGVRQHGITDFRVADLLKDRSLLD 655

Query: 658 IARKDAKHILTQDPDLTSVRG 678
           +ARKDA  ++  DP L+  +G
Sbjct: 656 MARKDAFSLVECDPRLSEEQG 676


>gi|254524632|ref|ZP_05136687.1| ATP-dependent DNA helicase RecG [Stenotrophomonas sp. SKA14]
 gi|219722223|gb|EED40748.1| ATP-dependent DNA helicase RecG [Stenotrophomonas sp. SKA14]
          Length = 703

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 249/692 (35%), Positives = 373/692 (53%), Gaps = 27/692 (3%)

Query: 2   RPSFLNPLFAP-----LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH 56
           R + + P+ +P     L+   GVG   +  L               DL  + P  + DR 
Sbjct: 3   RKAAVTPVLSPSGEASLAMLAGVGPAVAAKLQ------ARGLATLQDLWLHLPLRYEDRT 56

Query: 57  YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLND-GTGEITLLFFYRKTEMLKN 115
              +I ++       + G +       ++ R   K+ + D G G + L FF+ + + +  
Sbjct: 57  RLTRIEDLRNGVPAQVEGRVVAVER-GMRYRPMLKVAVEDEGQGTLVLRFFHFRQQQV-G 114

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFH--NSQDVNFPLIEAVYSLPTGLSVDLFKK 173
            F  G ++   G  K     + +VHP Y     N        ++ VY    G+     +K
Sbjct: 115 QFAVGNRLRCFGTPKPGHLGLEIVHPSYQVLGRNDDPELGDRLDPVYPTVEGVGPMTMRK 174

Query: 174 IIVEALSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARER 227
           +I +AL RLP     E +    L     PS+  A   +H P    D       T PA+ R
Sbjct: 175 LIGQALDRLPEESTLELLPSGWLDGLKLPSLRSALLTVHRPPPDADLAALAAGTHPAQRR 234

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           LA +ELLA  ++L   R   +     P+   G +A+ +L+ +PF+ T +Q    K I +D
Sbjct: 235 LAMEELLAHHLSLRRQRIALQAHHAPPLAGPGTLAKALLKQLPFALTGAQARVFKQIRED 294

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           +S+ + MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + + 
Sbjct: 295 LSRPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRGWLEP 354

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + +  + G +    R K +E++A+G+A +++GTHAL QD++ +  L L IVDEQHRFG
Sbjct: 355 LGVRIAWLAGKVTGKARAKVMEQVANGEAQVVVGTHALMQDAVVFQDLALAIVDEQHRFG 414

Query: 408 VQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           V QRL L  K       PH L+MTATPIPRTL ++   D+D+S I E P GR P++TV +
Sbjct: 415 VHQRLALRDKGAGGNSVPHQLVMTATPIPRTLAMSEYADLDVSAIDELPPGRTPVQTVAL 474

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522
             +R  E+IER+ +   EG++ YW+C  IEE +E +       + SL        + ++H
Sbjct: 475 NNDRRPELIERIALACREGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRVGLVH 534

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GR+   +K + M +FK G   LL+ATTVIEVG+DV +AS+++IENAE  GLAQLHQLRGR
Sbjct: 535 GRLKAAEKLATMVAFKTGEIDLLVATTVIEVGVDVPNASLMVIENAERLGLAQLHQLRGR 594

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG  +S C+LLY  PLS+ +  RL  ++ T DGF+IAE+DL+ R  GE+LG +Q+G+ 
Sbjct: 595 VGRGSAVSRCVLLYQAPLSQMARERLQTMRETNDGFVIAEKDLELRGPGELLGTRQTGLA 654

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            F IA       LL      A+ +L Q P L 
Sbjct: 655 GFRIADLARDAGLLPGVHDLAERLLAQQPALA 686


>gi|300767263|ref|ZP_07077175.1| DNA helicase RecG [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308180477|ref|YP_003924605.1| DNA helicase RecG [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|300495082|gb|EFK30238.1| DNA helicase RecG [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308045968|gb|ADN98511.1| DNA helicase RecG [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 679

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 228/682 (33%), Positives = 372/682 (54%), Gaps = 23/682 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   ++T  GVG      L+++            DLL Y+P  + D      ++EI+++ 
Sbjct: 5   LSDAVATLSGVGPARQKGLAEL------GINTIADLLTYYPFRYEDL-QVKDVNEIADQE 57

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            VT+ G ++         R+  ++            + FF +    L      G+ + V 
Sbjct: 58  KVTLKGTVASEPVLARFGRKKNRLNFRLLIDHDVYMVTFFNQ--PYLMKQIETGQDLAVY 115

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVL 185
           GK    ++ +  +    I  N+ D  F  I   Y     +     +K+I +A     PV+
Sbjct: 116 GKWDATRSSLTGMK--IINPNNADSAFGSI---YPASKTVKQGTIQKMIKQAYELYAPVI 170

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            + +  +L  K       +  + +H P    D   ++ AR    Y+E L  Q+ + ++++
Sbjct: 171 TDIVPANLRAKYRLLPRRQMIHDMHFPASQAD---STAARRSATYEEFLLFQMQMQVLKQ 227

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
                 GI I  +    +  ++ +PF  T +Q+  + +I  D+     M R+LQGDVGSG
Sbjct: 228 TDATTNGIAIAYDNDRLKAFIKTLPFELTHAQKRVVNEICLDLKSPKHMNRLLQGDVGSG 287

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA I M AA+ AG QA +M P  ILA+QH   + +   +T + V ++TG    A R+
Sbjct: 288 KTIVAAIVMYAAITAGYQAALMTPTEILAEQHANNLAQVFADTDVNVALLTGATKPAARK 347

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
             L  +A G+ +++IGTHAL QD + Y  L LVI DEQHRFGV QR    QK   P  L 
Sbjct: 348 TLLAALAAGEINLLIGTHALIQDGVTYANLGLVITDEQHRFGVNQRAAFRQKGGQPDALA 407

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S+I E PAGR+PI+T  +  N+ +  +  +   +  G +A
Sbjct: 408 MTATPIPRTLAITAYGEMDVSEIDELPAGRQPIQTTWVRSNQANSALSFVHQQIDNGSQA 467

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y + P IEE +  + ++      +L E+F +S  + ++HGRM   +K++VM +FK G  +
Sbjct: 468 YVVTPLIEESETLDVKNAEALSANLQEYFGASVKVGLLHGRMKPEEKDAVMAAFKAGDIQ 527

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LL++TTVIEVG+DV +A+I++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++ 
Sbjct: 528 LLVSTTVIEVGVDVKNATIMMIYDADRFGLAQLHQLRGRVGRGTKASYCILVADPK-NQQ 586

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF++A++DL+ R  G++LG+KQSGMP+F +  P    ++L++A++DA
Sbjct: 587 GIERMQIMTQTTNGFVLAQKDLELRGAGDVLGVKQSGMPEFKVGDPIADLTVLQVAQQDA 646

Query: 664 KHILTQDPDLTSVRGQSIRILL 685
             I+ Q    +    +++   L
Sbjct: 647 HAIVQQPDWQSQPDNRALAAYL 668


>gi|171319784|ref|ZP_02908870.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria MEX-5]
 gi|171094986|gb|EDT40012.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria MEX-5]
          Length = 686

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 246/696 (35%), Positives = 376/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      I E+    I    G +   + 
Sbjct: 2   KTADKLAKL------GLTRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFD-NE 54

Query: 82  FQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + + D  GE + L F       +K +   G+++ V G ++     + MVH
Sbjct: 55  VAYRPRRQLVVKIQDDDGEQLVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGMEMVH 113

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P      +      ++  VY    G+S    +K I  A+ R P LPE +  ++    L+ 
Sbjct: 114 PAVRVVEADAPLPQVLTPVYPSTAGVSQAYLRKAIENAVERTP-LPELLPPEIERDYLKP 172

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P++A+A  I+H+P    D     + + PA  R+ ++ELLA Q++L    ++ +    
Sbjct: 173 LGVPTLAQAVRILHHPAVDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAA 232

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +             ++   +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT
Sbjct: 233 PAMPRRAATDANALTTRLYAALPFTLTGAQARVVDEIAHDLTLAHPMQRLLQGDVGSGKT 292

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A   A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 293 VVAALAATQAIDAGYQAALMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAA 352

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           +E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 353 IEAAALGTAQLVIGTHAIIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARD 412

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+++S I E P GR P+ T ++   R +EVI R++  
Sbjct: 413 FQPHQLMMSATPIPRTLAMTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREA 472

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR+S  DK +VM++F
Sbjct: 473 ALTGRQVYWVCPLIEESETLQLQTAVETYETLATALPELKVGLVHGRLSPADKAAVMEAF 532

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 533 TRNEVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYT 592

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L++
Sbjct: 593 GPLSLTGRERLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLID 652

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   PD+ +      R L    QY +A
Sbjct: 653 PARDAAARLIAAYPDVVTQ--HLARWLGAREQYLKA 686


>gi|308389889|gb|ADO32209.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis alpha710]
 gi|325135657|gb|EGC58273.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M0579]
 gi|325201565|gb|ADY97019.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M01-240149]
 gi|325207546|gb|ADZ02998.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis NZ-05/33]
          Length = 680

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 239/666 (35%), Positives = 362/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAALGGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           IGTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 IGTHALFSDGVTFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I + P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDKLPPGRTPIKTRLVNNVRRAEVEGFVLNTCRKGRQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGELNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|167630218|ref|YP_001680717.1| ATP-dependent DNA helicase recg, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592958|gb|ABZ84706.1| ATP-dependent DNA helicase recg, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 828

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 237/678 (34%), Positives = 373/678 (55%), Gaps = 21/678 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             +   RGVG + +  L K+            DLLF+ P  +IDR     I++I     V
Sbjct: 151 TEIQFLRGVGPQRAALLKKL------GIATVRDLLFHLPHRYIDRSRLMSIAQIRYPGDV 204

Query: 71  TITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           T+ G I  +   Q   RR   ++   ++DG+G + ++ F RK   L   +  G  + V+G
Sbjct: 205 TVAGVIRAYQ--QWNPRRGLAVIKGQIDDGSGLLPIVLFNRK--HLPAKYPPGTAVVVSG 260

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLP 186
           K++    +  ++           ++   I  VY    GL+    + +  + L +  P L 
Sbjct: 261 KVEFRYGKAELLVEEMENQAEAGLHTNRIIPVYPATEGLNQRFLRGLYGQVLDKYAPSLI 320

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + +   +  K   PS+ EA   IH P      E     R ++A++E+     A   +R+Q
Sbjct: 321 DPLPTPVAAKVKLPSLVEAVRQIHFPES---LEAAEAGRRKVAFNEIFLLSTAWRYVRRQ 377

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            +  I  +      +  Q+    +P++ T +Q+  I +I  DM     M R+LQGDVG+G
Sbjct: 378 KQGRIEGVRHQPAREELQRFWSLLPYTLTGAQQRVISEIEADMEADRPMHRLLQGDVGAG 437

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  A+  AV +G QA +MAP  +LA+QH    +    N  + V  +TG+M +  R 
Sbjct: 438 KTVVAASAVVKAVASGYQAALMAPTEVLAEQHAINWQSLLANMAMPVAHLTGSMGRRRRE 497

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  +A G   +++GTHAL Q  + + +L LVI+DEQHRFGV+QR  L  K+ A  +L+
Sbjct: 498 EVLRGLADGSIPVVVGTHALLQKEVTFRRLGLVIIDEQHRFGVRQRAVLKGKSEAADLLV 557

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T  GD+D+S + E+P GR+ +KT  +  +    +   ++  ++ G +A
Sbjct: 558 MTATPIPRTLAMTVYGDLDVSILDERPPGRRQVKTHHVGSDAWPRIYRLMRREVAAGHQA 617

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IE+ +ES+  +V ER+ +L  +     ++ I+HGR+   +K +VM+ F  G   
Sbjct: 618 YVVCPAIEDSEESDLAAVEERYATLSRNVFPDLAVGILHGRLKKEEKAAVMERFYRGQLH 677

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ATTVIEVG+DV  A+I++IE AE FGLAQLHQLRGRVGRG+  S CIL+    LS+ 
Sbjct: 678 ILVATTVIEVGVDVPAATIMVIEGAERFGLAQLHQLRGRVGRGDAQSYCILV-ADKLSEE 736

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+  ++ ++DGF +AEEDLK R  GE LG +QSG+P F  A       L+E+A++ A
Sbjct: 737 GRQRMRAMEASDDGFRLAEEDLKLRGPGEFLGTRQSGIPVFKAADLVRDADLMEMAKEWA 796

Query: 664 KHILTQDPDLTSVRGQSI 681
           +H   QDP+L +   + +
Sbjct: 797 RHWSEQDPELEAPESREL 814


>gi|304388291|ref|ZP_07370407.1| DNA helicase RecG [Neisseria meningitidis ATCC 13091]
 gi|304337722|gb|EFM03875.1| DNA helicase RecG [Neisseria meningitidis ATCC 13091]
          Length = 680

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 238/666 (35%), Positives = 363/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAALGGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGTVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLSIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I + P GR PIKT ++   R  EV   +  +  +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSIIDQLPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTATETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|313892557|ref|ZP_07826144.1| ATP-dependent DNA helicase RecG [Dialister microaerophilus UPII
           345-E]
 gi|313118954|gb|EFR42159.1| ATP-dependent DNA helicase RecG [Dialister microaerophilus UPII
           345-E]
          Length = 678

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 229/673 (34%), Positives = 368/673 (54%), Gaps = 17/673 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG K    L K+      N     DL+ + P  + D      + +I    
Sbjct: 3   LEDSVMKVKGVGPKMFEKLGKL------NIKTVEDLINFFPRKYQDWSKITPMEDIVIGE 56

Query: 69  IVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
              I G I +       +  R   ++L D    +TL +F +     K  F    +I   G
Sbjct: 57  ECLIYGKIVKIDERILRRGMRLLSVILTDNINSVTLTYFNQS--WKKKQFNINEEILAYG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDV-NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           K++ L  +  + +        +++ NF  +  +Y L  G++    + +I  AL  +  L 
Sbjct: 115 KVEYLYGKYQISNAEIEAVPKENLKNFEKLVPIYPLTEGITATQMRSMIAFALKNVSNLK 174

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +  ++L +++FP    A   +HNP+  K+ E    AR+RLA++EL   Q  +L+++++
Sbjct: 175 ENLPIEILIRENFPDKLLAIKTLHNPKNYKEKE---TARKRLAFEELFFMQAGILMLKEK 231

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     I     GK+ + +L   PF  TK Q+ A  DI  DM     M R+LQGDVGSG
Sbjct: 232 RKINSYGIKCGPSGKLVKSVLNKFPFELTKDQKKAFSDIENDMEDIEPMYRLLQGDVGSG 291

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT +A +  A  VE G QA IMAP  +LA QHY+      +N  + +  ++GN+  + R 
Sbjct: 292 KTAIAALTAAKIVENGYQATIMAPTEVLASQHYKTFLNLYKNLSVEIAYLSGNIKNSERE 351

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
             L ++  G+  I+IGTHAL ++++++  L LVI DEQHRFGV+QR  L  K   PHVL+
Sbjct: 352 VLLNKLKSGEIDILIGTHALIENNVKFAHLGLVITDEQHRFGVKQRELLETKGENPHVLV 411

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRT+ L+  GD+D S I + P GRKP+KT +I    +  V+  +K  + +G +A
Sbjct: 412 MTATPIPRTMALSVYGDLDASVINQMPIGRKPVKTYVINDKLLQRVLIFIKKEIQKGHQA 471

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP +EE ++++  + +  ++ L ++  S     +I+G+M + +KE +M+ F     +
Sbjct: 472 YIVCPLVEESEKTDLAAAISVYDKLRKNIFSEYKCGLIYGKMKNSEKEQIMNDFCENKLQ 531

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT+VIEVG++V +A+++++  AE FGL+QLHQLRGRVGRG+  S CIL Y    ++ 
Sbjct: 532 ILVATSVIEVGVNVPNATVMLVYGAERFGLSQLHQLRGRVGRGKIQSYCIL-YTKNTNET 590

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL+++    +GFL++E+DL  R  GE+ G  Q GMP   +A       LLE AR  A
Sbjct: 591 TTLRLNIMTKINNGFLLSEKDLMLRGSGELFGYHQHGMPDLKVANIIRDLPLLEKARNYA 650

Query: 664 KHILTQDPDLTSV 676
           +  +  + ++ S 
Sbjct: 651 QKFIHSEKNIKSE 663


>gi|194367028|ref|YP_002029638.1| ATP-dependent DNA helicase RecG [Stenotrophomonas maltophilia
           R551-3]
 gi|194349832|gb|ACF52955.1| ATP-dependent DNA helicase RecG [Stenotrophomonas maltophilia
           R551-3]
          Length = 703

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 248/692 (35%), Positives = 375/692 (54%), Gaps = 27/692 (3%)

Query: 2   RPSFLNPLFAP-----LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH 56
           R + + P+ +P     L+   GVG   +  L               DL  + P  + DR 
Sbjct: 3   RKAAVTPVLSPSGEASLAMLAGVGPAVAAKLQ------ARGLATLQDLWLHLPLRYEDRT 56

Query: 57  YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLND-GTGEITLLFFYRKTEMLKN 115
              +I ++       + G +       ++ R   K+ + D G G + L FF+ + + +  
Sbjct: 57  RLTRIEDLRNGVPAQVEGRVVAVER-GMRYRPMLKVAVEDEGQGTLVLRFFHFRQQQV-G 114

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFH--NSQDVNFPLIEAVYSLPTGLSVDLFKK 173
            F  G ++   G  K     + +VHP Y     N        ++ VY    G+     +K
Sbjct: 115 QFAVGNRLRCFGTPKPGHLGLEIVHPSYQVLGRNDDPELGDRLDPVYPTVEGVGPMTMRK 174

Query: 174 IIVEALSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARER 227
           +I +AL RLP     E +    L     PS+  A   +H P    D       T PA+ R
Sbjct: 175 LIGQALDRLPEESTLELLPSGWLDGLGLPSLRSALLTVHRPPPDADLAALAAGTHPAQRR 234

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           LA +ELLA  ++L   R   +     P+   GK+A+ +L+ +PF+ T +Q    K I +D
Sbjct: 235 LAMEELLAHHLSLRRQRIALQAHHAPPLAGPGKLAKALLKQLPFALTGAQARVFKQIRED 294

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           +++ + MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + + 
Sbjct: 295 LARPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRGWLEP 354

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + +  + G +    R K +E++A+G+A +++GTHAL Q+++ +  L L IVDEQHRFG
Sbjct: 355 LGVRIAWLAGKVTGKARAKVMEQVANGEAQVVVGTHALMQEAVVFQDLALAIVDEQHRFG 414

Query: 408 VQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           V+QRL L  K       PH L+MTATPIPRTL ++   D+D+S I E P GR P++TV +
Sbjct: 415 VRQRLALRDKGAGGNSVPHQLVMTATPIPRTLAMSEYADLDVSAIDELPPGRTPVQTVAL 474

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522
             +R  E+IER+ +   EG++ YW+C  IEE +E +       + SL        + ++H
Sbjct: 475 NNDRRPELIERIALACQEGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRVGLVH 534

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GR+   +K + M +FK G   LL+ATTVIEVG+DV +AS+++IENAE  GLAQLHQLRGR
Sbjct: 535 GRLKAAEKLATMVAFKAGEIDLLVATTVIEVGVDVPNASLMVIENAERLGLAQLHQLRGR 594

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG  +S C+LLY  PLS+ +  RL  ++ T DGF+IAE+DL+ R  GE+LG +Q+G+ 
Sbjct: 595 VGRGSAVSRCVLLYQAPLSQMARERLQTMRETNDGFVIAEKDLELRGPGELLGTRQTGLA 654

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            F IA       LL      A+ +L Q P L 
Sbjct: 655 GFRIADLARDAGLLPGVHDLAERLLDQQPALA 686


>gi|326790886|ref|YP_004308707.1| ATP-dependent DNA helicase RecG [Clostridium lentocellum DSM 5427]
 gi|326541650|gb|ADZ83509.1| ATP-dependent DNA helicase RecG [Clostridium lentocellum DSM 5427]
          Length = 687

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 232/680 (34%), Positives = 360/680 (52%), Gaps = 19/680 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   ++  +GVG K    L K+            D++ ++P  + DR     ++    + 
Sbjct: 3   LSDSINELKGVGDKVGDKLRKL------GIYTLKDMIEHYPREYEDRRQITPLAACELDE 56

Query: 69  IVTITGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
              +   +        +  +      + D T  I + FF      ++N F  G K  + G
Sbjct: 57  PQNVLVTVCSKPQIAKKGNKILVSFRVKDETSSIMVTFF--GQAYMRNNFVMGEKYLLYG 114

Query: 128 KIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPV 184
           KIK    ++ M  P Y  +   S+      I  +Y     LS  + + +I   L   LP 
Sbjct: 115 KIKHKYGQLEMDSPEYQKVADPSKLGTVAKITPIYPTTQKLSQKVIRGLIEHCLNEVLPE 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + + + + ++++    S  EA   IH P   KD E    AR+RL ++EL   Q++L  ++
Sbjct: 175 VKDHLPERIIKQYHLVSKEEALRGIHFP---KDSEHFFEARKRLVFEELFMLQLSLYQLK 231

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
             F  ++    +      +  + ++PF  T +Q+  +++I+ DM     M R++QGDVGS
Sbjct: 232 ADFATKLMGIAHDVTSELKAFMASLPFELTGAQKRVMREIVGDMKSPYAMNRLVQGDVGS 291

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++A I++   V+ G Q  +MAP  +L  QHYEFIK   +   I V ++TG+     +
Sbjct: 292 GKTVIAAISLFLVVKDGFQGALMAPTEVLVVQHYEFIKGIMEPFGIQVGLLTGSTTAKQK 351

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R+ L  I   +  I++GTHAL +D+++   L LVI DEQHRFGV+QRLKLT+K   P V+
Sbjct: 352 RELLAAIKTNEIQIVVGTHALIEDNVEIPNLGLVITDEQHRFGVRQRLKLTEKGHLPDVM 411

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL L   GD+DIS I E P GR+PI+T  +       +   ++  +  G++
Sbjct: 412 VMTATPIPRTLALILYGDMDISIIDELPPGRQPIRTNAVDSAYHPRIYRFIEKQIEAGRQ 471

Query: 485 AYWICPQIEEK-KESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
            Y ICP +EE  K S  ++V+E    L         IA +HG+M   +K  +M  F    
Sbjct: 472 CYIICPMVEESEKTSELKNVIEYTEYLKTQVFPHIPIAYLHGKMKPKEKNEIMAQFARAE 531

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            K+L++TTVIEVG++V +A+II+IENAE FGLAQLHQLRGRVGRG+  S C+L+     +
Sbjct: 532 TKILVSTTVIEVGVNVPNATIILIENAERFGLAQLHQLRGRVGRGKHQSYCVLVSDSK-N 590

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           K +  RL +++ + DGF+IAE DLK R  GE  G KQ G+P+  IA       +L   + 
Sbjct: 591 KVTKKRLKIMEESTDGFVIAETDLKLRGPGEFFGTKQHGLPEMKIANLYTDAKVLGEVQG 650

Query: 662 DAKHILTQDPDLTSVRGQSI 681
             K++L  DP+L   +   +
Sbjct: 651 CVKNLLAIDPNLGETQNNQL 670


>gi|302389602|ref|YP_003825423.1| ATP-dependent DNA helicase RecG [Thermosediminibacter oceani DSM
           16646]
 gi|302200230|gb|ADL07800.1| ATP-dependent DNA helicase RecG [Thermosediminibacter oceani DSM
           16646]
          Length = 674

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 231/681 (33%), Positives = 373/681 (54%), Gaps = 20/681 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + +   +GVG   +  L  +           +DLL + P  ++D        +  ++ 
Sbjct: 3   LLSEVQYIKGVGPSRAKLLRSL------GINTVMDLLHFFPRRYLDLTPL-NFEQGHDDS 55

Query: 69  IVTITGYISQH--SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           +      ++ +        + R  KI + DG  + + +FF +    +K+ F  G K+ + 
Sbjct: 56  VGAFPCIVADYGYEVLTRSRMRIVKIPVTDGRRKGSAVFFNQ--PYMKDAFKPGDKLVLI 113

Query: 127 GKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           GKI+K      +++P +  F  +  V++  I  VY L  GL+  + +KII   L     +
Sbjct: 114 GKIRKNYGEYEILNPEWQKFEKTDYVDYARICPVYPLTKGLTQKIMRKIIKSVLQDPLEV 173

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E + + +L++      A A   IH P     +E  + A+ER A++ELL  Q+A+++ R+
Sbjct: 174 DEVLPQSVLKEYRLMPKASALRNIHFPES---WEKLTKAQERFAFEELLLFQLAMMITRR 230

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
                       +    +  L+N+PFS T+ Q+  IK+I+ D+     M R++QGDVGSG
Sbjct: 231 HL-MGEKRKNTYKDFDLKPFLKNLPFSLTEGQKKVIKEIISDLKSDRIMNRLIQGDVGSG 289

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA IA+  AV+ G Q   M P  IL+ QH   +KK+     I VE++ G+MP+A + 
Sbjct: 290 KTVVASIALYLAVKNGYQGAFMVPTEILSIQHGATLKKFLNPHGIKVEVLKGDMPKAVKE 349

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L  +  G+  +++GTHAL Q+++++Y+L +V+ DEQHRFGV+QR  L +K   P VL+
Sbjct: 350 QILCDLEKGRIDVVVGTHALIQENVKFYRLGMVVTDEQHRFGVRQREALVKKGYYPDVLV 409

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPRTL LT   D+DIS I   P GR+ + T ++  +    V + ++  + +G +A
Sbjct: 410 MSATPIPRTLALTIYSDLDISVIDTMPRGRQKVDTYVVDESMRTRVYKFMESEIKKGNQA 469

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           Y +CP +EE  +    SV E    L + F    I I+HG+M   +K+ +M  F +    +
Sbjct: 470 YVVCPAVEES-DIGLSSVEEIGRELQDTFPHLRIGILHGKMKTEEKDRIMKDFYDKKIDV 528

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+ATTV+EVG+DV  A++I++ENAE FGLAQLHQLRGRVGR +  S C+L+         
Sbjct: 529 LVATTVVEVGVDVPSATLIVVENAERFGLAQLHQLRGRVGRSDLKSYCVLISGSK-DMGV 587

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL+ +  T +GF IA++DL+ R  GE LG+KQ GMP+F  A       LLE  +  A 
Sbjct: 588 KARLNFMMKTHNGFEIAQKDLELRGPGEFLGVKQHGMPEFKFASLIKDLKLLETTKTLAD 647

Query: 665 HILTQDPDLTSVRGQSIRILL 685
            I+ +D  L++   + ++  L
Sbjct: 648 EIIEKDL-LSTHEYKGLKRTL 667


>gi|220909933|ref|YP_002485244.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 7425]
 gi|219866544|gb|ACL46883.1| ATP-dependent DNA helicase RecG [Cyanothece sp. PCC 7425]
          Length = 822

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 248/711 (34%), Positives = 404/711 (56%), Gaps = 36/711 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+T  G+G K    L+K+            DLLFY+P   ID   +  I+++    
Sbjct: 125 LDQPLTTLSGIGPKSGDRLAKL------GLYTVRDLLFYYPRDHIDYARQVNIADLEAGA 178

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRK--------TEMLKNVF 117
            VT+ G + + + F   +     IL   + D +G+I L  F+           E  K ++
Sbjct: 179 TVTLVGTVRRCNCFSSPRNPKLTILEILIRDRSGQIKLNRFWAGDRFRQRGWQEQQKRLY 238

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF-----PLIEAVYSLPTGLSVDLFK 172
             G  I  +G +K+ K  + +  P     +  D          I  VYSL  G+  DL +
Sbjct: 239 APGVVIAASGLVKESKFGLTLEEPELEVLDQGDAKLDSLKVGRIVPVYSLSEGIPPDLVR 298

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           + +V AL     L E + + L Q     S+ EA   IH P    D E  + AR+RL +DE
Sbjct: 299 RAVVSALPAAKHLTEPLPEKLRQPYELISLVEAIAHIHFPP---DSEALAKARQRLVFDE 355

Query: 233 LLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
               Q+ LL  R+Q +++     +  +G + ++  + +PF  T +Q+  + DIL D++Q 
Sbjct: 356 FFYLQLGLLQRRQQQRQQQQSAVLAPQGHLLEQFYQILPFQLTGAQQRVVNDILNDLTQP 415

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVGSGKT+VA++A+ AA+++G Q  +MAP  +LA+QHY  +  +     + 
Sbjct: 416 APMNRLVQGDVGSGKTVVAVVALLAAIQSGYQTALMAPTEVLAEQHYRKLVDWFNRLCLP 475

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++TG+   A RR+   ++  G+  +++GTHAL Q+ +++ +L LV++DEQHRFGVQQR
Sbjct: 476 VELLTGSTKVAKRREIFAQLQTGELPLLVGTHALIQEGVEFQRLGLVVIDEQHRFGVQQR 535

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            +L QK T+PHVL MTATPIPRTL LT  GD+D+S+I E P GR+ I+T ++  +   + 
Sbjct: 536 ARLQQKGTSPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQAIQTTVLTASDRPQA 595

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE--HFTSSIAIIHGRMSDID 529
            + ++  +++G++ Y + P +EE ++ + +S ++    L E       + ++HGRM+   
Sbjct: 596 YDLIRREIAQGRQVYIVLPLVEESEKLDLKSAIDEHQHLQETVFPQFRVGLLHGRMTAAA 655

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE  ++ F+ G  +LL++TTV+EVG+D+ +A++++IE+AE FGL+QLHQLRGRVGRG   
Sbjct: 656 KEEAINEFRRGETQLLVSTTVVEVGVDIPNATVMLIEHAERFGLSQLHQLRGRVGRGAAQ 715

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C+L+ +   ++ +  RL VL  ++DGF IAE DL+ R  GE+LG +QSG+P   +A+ 
Sbjct: 716 SYCLLM-NSSRAETARQRLGVLAQSQDGFFIAEMDLRLRGPGEVLGTRQSGLPDLALARL 774

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
               ++LE++R  A+ ++  D  L        R  L   +  E +Q +  G
Sbjct: 775 VEDQAVLELSRAAAEKVMAIDSTLA-------RWPLMAQELKERYQRLMGG 818


>gi|21244116|ref|NP_643698.1| ATP-dependent DNA helicase RecG [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21109744|gb|AAM38234.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 717

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 249/700 (35%), Positives = 379/700 (54%), Gaps = 36/700 (5%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           PS      A LS+  GVG K +   +              DL  + P  + DR     I+
Sbjct: 9   PSLAVAGQARLSSLPGVGPKVADRFA------ARGILSVQDLWLHLPLRYEDRTRLTTIA 62

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGR 121
           ++       I G +        + R   ++ ++D + G + L FF+ +   +   F  G 
Sbjct: 63  QLQGGVPAQIEGRVDAVER-GFRFRPVLRVAVSDASYGTLVLRFFHFRAAQVAQ-FAVGT 120

Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEAL 179
           ++ V G  K  ++   +VHP Y +    +D      ++ VY +  G+     +K+I +AL
Sbjct: 121 RVRVFGTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIGQAL 180

Query: 180 SRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDEL 233
            RLP     E +    LQ +  PS+  A   +H P    D         PA++RLA +EL
Sbjct: 181 ERLPPESALELLPPHWLQDERLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQQRLAIEEL 240

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA Q++L   R   ++     +   G + Q++ + +PF  T +Q+   + I  D++Q + 
Sbjct: 241 LAHQLSLRRQRIALQRLHAPSLPGNGTLVQQLRKALPFQLTGAQQRVFEQIAHDLAQPSP 300

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + +   I + 
Sbjct: 301 MLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLTNLRGWLEPLGIRIV 360

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    R  A+  +A GQA +++GTHAL Q+++ ++ L L I+DEQHRFGV QRL 
Sbjct: 361 WLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHRFGVHQRLA 420

Query: 414 LTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L  K       PH L+MTATPIPRTL +++  D+D+S I E P GR P++T+++   R  
Sbjct: 421 LRDKGAAAGSVPHQLVMTATPIPRTLAMSAYADLDVSAIDELPPGRTPVQTIVLSAERRP 480

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE--------------RFNSLHEHFT 515
           E++ER++   +EG++AYW+C  IEE +E    +  +               F +L     
Sbjct: 481 ELVERIRAACAEGRQAYWVCTLIEESEEPGKGAQGQQGGPPRIEAQAAEVTFETLSAQLP 540

Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIENAE  GLA
Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGLA 600

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE+DL+ R  GE+L
Sbjct: 601 QLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLQLRGPGELL 660

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           G +Q+G+  F IA       LL   +  A+ +L + PD+ 
Sbjct: 661 GTRQTGLASFRIADLARDAGLLPRVQLLAERLLDEAPDIA 700


>gi|119896768|ref|YP_931981.1| ATP-dependent DNA helicase RecG [Azoarcus sp. BH72]
 gi|119669181|emb|CAL93094.1| ATP-dependent DNA helicase [Azoarcus sp. BH72]
          Length = 679

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 232/662 (35%), Positives = 362/662 (54%), Gaps = 17/662 (2%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           G+G++ +  L K+      +  R  DL+ + P  + D      I          I G ++
Sbjct: 7   GLGEQLASRLRKL------DLHRQEDLVVHLPLRYEDETRLTPIGVARAGFPAQIEGEVT 60

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
                 L+ RR     + D +G +   +        K     GR++ + G+++       
Sbjct: 61  SCEVV-LRPRRQLVARVRDDSGTLVARWINFYPSQQKQ-LAVGRRVRLFGEVRGGFFGDE 118

Query: 138 MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197
           MVHP     +  +     +  VY    GL     +K+I  AL  +P L + + +D  +  
Sbjct: 119 MVHPRVRNIDPGEGLPEALTPVYPTTAGLGQTTLRKLIDRALKTVP-LQDLLPEDARRAL 177

Query: 198 SFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
             P  AEA   +H+P    D         PA  R+ ++ELL  Q++L       +    +
Sbjct: 178 DLPGFAEALTALHHPAPDADPIALENREHPAWRRIKFEELLVQQLSLRRAYNARRAREAV 237

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            +    ++   ++R +PF+ T +Q+ A+ +I  D+   + M R+LQGDVGSGKT+VA +A
Sbjct: 238 VLPARQQLTAGLVRGLPFALTSAQQRAVGEIAADLGAAHPMQRLLQGDVGSGKTIVAALA 297

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           M  A E G QA +MAP  ILA+QHY+ +  + +   + +  ++G+  +  R   L R+  
Sbjct: 298 MLQAAENGWQAALMAPTEILAEQHYKKLAAWLEPLGVGIAWLSGSRRKREREAELARLQS 357

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATP 430
           G+  + +GTHAL +D +   +L L I+DEQHRFGV+QRL L +K      PH+L+M+ATP
Sbjct: 358 GEVLLAVGTHALIEDEVALPRLALAIIDEQHRFGVRQRLALREKGAHGLRPHMLMMSATP 417

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +T   D+D+S + E P GR PI+T ++   R +EV+ R++    +G++AYW+CP
Sbjct: 418 IPRTLAMTHYADLDVSVLDELPPGRTPIRTKLVSDARREEVVGRVRDACLQGRQAYWVCP 477

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            IEE +    ++ ++ + +L E      + ++HGR+   +K + M +F  G  ++L+ATT
Sbjct: 478 LIEESEALQLQTALDTYAALSEALPELRVGLVHGRLKADEKSATMAAFSAGELQVLVATT 537

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S CILL+  PLS+N   RL 
Sbjct: 538 VIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLFAQPLSENGRARLK 597

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           V+    DGF IA EDL+ R  GE +G +QSG+P    A  EL   L+E AR  A+ +L  
Sbjct: 598 VIYEHTDGFAIAREDLQLRGPGEFVGARQSGVPLLRYADLELDAGLIEPARALAERMLRD 657

Query: 670 DP 671
            P
Sbjct: 658 AP 659


>gi|254419102|ref|ZP_05032826.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
 gi|196185279|gb|EDX80255.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
          Length = 699

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 274/698 (39%), Positives = 408/698 (58%), Gaps = 17/698 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFA +S+ +GVG +    + K+            DL F  PS  I R     
Sbjct: 5   MRPQILFPLFAEVSSLKGVGPRVLPLVQKVAG------PLVRDLAFLSPSGVIVRRPMEA 58

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
            +   +   V I   +        +   P K+  +D TG + L++F    + +  +   G
Sbjct: 59  -ATAVDGE-VGIFEIVIDRLFVPSRPGAPLKVRASDPTGFVHLVWFGGSPQHIDRLLPRG 116

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+GK+++    + +VHP  +  + +  + P  E VY    GL+    +K++  AL 
Sbjct: 117 ETRLVSGKVERFNGEVQIVHPDIVTPD-KAADIPASEPVYPATQGLTSRQLRKLVQAALP 175

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
             P LPEW +   L+K+++     A + +H P    D    +PAR+RLAYDE LA Q+AL
Sbjct: 176 AAPDLPEWQDPAWLKKQNWLGWRAALDALHAPAGEPDLTPEAPARQRLAYDEFLAHQLAL 235

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
              R+  + +    I   G  +  +L+ +PF+ T +Q  A+ +I +D+    +M R+LQG
Sbjct: 236 ARRRRAREIKPS-AIIAPGAASDHLLQALPFTLTNAQAQAVAEIRRDLVSGKQMGRLLQG 294

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT VA +A+A A  +G Q+ +MAP  ILA+QHYE +    +   ++  ++TG   
Sbjct: 295 DVGSGKTAVAALALADAASSGFQSALMAPTEILARQHYEKLGPLLEAAGVVSVLLTGRDT 354

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              RR+ L  +A G A + IGTHALFQD++++ +L L ++DEQHRFGV +R +L  K   
Sbjct: 355 NGQRREKLAALASGHAQVAIGTHALFQDAVRFDRLALAVIDEQHRFGVSERQRLQAKGDP 414

Query: 421 P----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                H+L M+ATPIPRTL LT  G++++S++ EKP GR P+ T ++P+ RI EV  RLK
Sbjct: 415 RIGAVHLLTMSATPIPRTLELTQYGELEVSRLMEKPPGRTPVTTAVVPLARIGEVAARLK 474

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            VL  G +AYWICP + E +  +  + V+R + L       + + HG+M   ++E+VM  
Sbjct: 475 TVLDAGAQAYWICPLVAESEAIDLAAAVDRADDLRRLLGVEVGLAHGQMPGAEREAVMAD 534

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G   LL+ATTV+EVG+DV +ASI++IE+A+ FGLAQLHQLRGRVGRG + SSCILLY
Sbjct: 535 FADGRLPLLVATTVVEVGVDVPNASIMVIEHADRFGLAQLHQLRGRVGRGAKASSCILLY 594

Query: 597 ---HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
                 L + +  RL  L+ TEDGF+IAEED + R  G+ LG+KQSG P +  A P  H 
Sbjct: 595 GGQDGALGETAKERLETLRRTEDGFVIAEEDFRLRGGGDPLGLKQSGFPAYRFADPIRHR 654

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           +L+  A  DA+ IL +DPDLTS RGQ++++L  L+ + 
Sbjct: 655 ALMLAAADDARLILGRDPDLTSERGQAVQVLEELFDWK 692


>gi|188990343|ref|YP_001902353.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732103|emb|CAP50295.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris]
          Length = 713

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 249/697 (35%), Positives = 380/697 (54%), Gaps = 34/697 (4%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           PS      APLS+  GVG K +   +              DL  + P  + DR     I+
Sbjct: 9   PSLAVAGQAPLSSLPGVGPKVAEKFA------ARGILSLQDLWLHLPLRYEDRTRLTTIA 62

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGR 121
           ++       I G +        + R   ++ ++D + G + L FF+ +   +   F  G 
Sbjct: 63  QLQGGVPAQIEGRVEAMER-GFRFRPVLRVAMSDDSYGTLVLRFFHFRAAQVAQ-FSPGT 120

Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEAL 179
           ++ V G  K  +N   +VHP Y +    +D      ++ VY +  G+     +K+I +AL
Sbjct: 121 RLRVFGTPKPGQNGWEIVHPSYRVLAPDEDAGLGDCLDPVYPVLEGVGPATLRKLIGQAL 180

Query: 180 SRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDEL 233
            RLP     E +    LQ +  PS+  A   +H P    D         PA++RLA +EL
Sbjct: 181 ERLPPEAALELLPPHWLQDEQLPSLRSALLTMHRPPVDTDPQQLLAGGHPAQQRLAIEEL 240

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA Q++L   R   ++     +   G++ Q++ + +PF  T +Q+   + I  D++Q   
Sbjct: 241 LAHQVSLRRQRIALQRFRAPQLRG-GRLVQQLRKALPFQLTGAQQRVFEQIAHDLAQPAP 299

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           MLR++QGDVGSGKT+VA +A   AVE G Q  + AP  +LA+QH   ++ + +   + + 
Sbjct: 300 MLRLVQGDVGSGKTVVAALAAMLAVEHGKQVALAAPTELLAEQHLANLRGWLEPLGVRIV 359

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    R  A+  +A GQA +++GTHAL QD++ ++ L L I+DEQHRFGV QRL 
Sbjct: 360 WLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQDAVVFHDLALAIIDEQHRFGVHQRLA 419

Query: 414 LTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L  K       PH L+MTATPIPRTL + +  D+D+S I E P GR P++T+++   R  
Sbjct: 420 LRDKGAAAGSVPHQLVMTATPIPRTLAMAAYADLDVSAIDELPPGRTPVQTIVLSAERRP 479

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNF-----------RSVVERFNSLHEHFTS-S 517
           E++ER++   +EG++AYW+C  IEE ++++            ++    F +L        
Sbjct: 480 ELVERIRAACAEGRQAYWVCTLIEESEDTDKGAQNGPPRIEAQAAQVTFETLSAQLPGVR 539

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A++HGRM   +K+  M  FK G   LL+ATTVIEVG+DV +AS++IIENAE  GLAQLH
Sbjct: 540 VALVHGRMKPAEKQQAMLDFKQGRTDLLVATTVIEVGVDVPNASLMIIENAERLGLAQLH 599

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG   SSC+LLY  PLS  +  RL  ++ T DGF+IAE DL+ R  GE+LG +
Sbjct: 600 QLRGRVGRGAAASSCVLLYQGPLSLMARQRLETMRQTNDGFVIAERDLELRGPGELLGTR 659

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           Q+G+  F IA       LL   +  A+ +L + P++ 
Sbjct: 660 QTGLASFRIADLARDAGLLPRVQVLAERLLDEAPEIA 696


>gi|300814539|ref|ZP_07094795.1| ATP-dependent DNA helicase RecG [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300511366|gb|EFK38610.1| ATP-dependent DNA helicase RecG [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 674

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 236/683 (34%), Positives = 377/683 (55%), Gaps = 20/683 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +   + VG K    L+      N       DLL+++P  + D     K+SE       T 
Sbjct: 7   IKNLKSVGPKRLKLLN------NIGIFSIKDLLYFYPRRYEDSSKILKLSEGIIGEKATF 60

Query: 73  TGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
              I      +  +R       L+ D + E  L+FF  +   +KN    G    + GK +
Sbjct: 61  RCRILSLLDNRNIRRGLSITSFLIEDDSAEAKLIFFNNR--FIKNTIDFGETYLIYGKYE 118

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           + + RI +  P     ++   N   I  +Y+   GL+ +    +I + + +  +  E I 
Sbjct: 119 RFRGRIQLTSPEIEKVDNIR-NLGRIRGIYNQTKGLTNNNIDYLIDQVIDK-NLFEECIP 176

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
            DL++K S      A   IH P   K +  +   ++RL Y+ELL  ++++L M+ +    
Sbjct: 177 NDLIKKYSLIDKNRAIKNIHRPENRKSYALS---KQRLVYEELLFFELSILSMQNKNNSS 233

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            GI  N+  KI +  + N+P+  T  QE  +KDI  DM     + R++QGDVGSGKT+V+
Sbjct: 234 HGIKFNIPNKIYE-FINNLPYKLTSGQEKVLKDITGDMQNGKSVNRLIQGDVGSGKTIVS 292

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           +I    AV  G Q  IMAP  ILA+QH+E      ++  + ++++ G+     +++ L  
Sbjct: 293 IILSLVAVLNGYQCAIMAPTEILAKQHFENFNSLLEDYGVRIKLLVGSTSSKVKKEILTN 352

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
            A+G   I+IGTH+L +D ++++ L L ++DEQHRFGV QR KL  K      ++M+ATP
Sbjct: 353 TANGLIDILIGTHSLIEDDVKFFNLGLNVIDEQHRFGVIQRSKLRYKNDKACNIIMSATP 412

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL L    D+D S I   P GRK IKT+ I  ++++E +  ++  L+ G +AY IC 
Sbjct: 413 IPRTLSLILYADLDTSIIDTMPGGRKNIKTLAINSSQVNEALTFIEKELNAGHQAYVICS 472

Query: 491 QIEEKKESNFRSVVER-FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            IE+ ++      VE+ F  L + F    +A++HGR+S  +K  VM+ FKN    L+++T
Sbjct: 473 LIEDNEDFENLESVEKVFKDLKKFFKNYKLALLHGRLSTDEKNKVMEDFKNRKIDLIVST 532

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVGI+V +A++++I NAE FGL+ LHQLRGRVGRG+  S CIL ++   S+ S+ R+
Sbjct: 533 TVIEVGINVANATVMMIYNAERFGLSTLHQLRGRVGRGDAQSYCIL-FNNSKSEISWRRM 591

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            ++ ++ DGF IA +DL+ R  G+ILG++QSG+P   +A P     +L  A  DAK+IL 
Sbjct: 592 KIMTDSTDGFYIANKDLELRGFGDILGVRQSGIPNLRLANPLKDQKILSYASTDAKNILK 651

Query: 669 QDPDLTSVRGQSIRILLYLYQYN 691
           +D DLT  + ++++  +  +Q N
Sbjct: 652 EDIDLTG-KYKNLKKFVDEFQEN 673


>gi|293380322|ref|ZP_06626396.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 214-1]
 gi|290923137|gb|EFE00066.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 214-1]
          Length = 678

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 217/683 (31%), Positives = 368/683 (53%), Gaps = 22/683 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +  L      G+       DLLFY P  + D      + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTTAEL------GSLGIYSIYDLLFYFPFRY-DELQTLPLDQIMD 56

Query: 67  ERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            + V + G ++  +       K+      +      I + FF +    LKN    G+++ 
Sbjct: 57  GQKVMLKGIVATEAFVSRFGYKKTRLSFKMRIDHDVIMVNFFNQ--PWLKNKIEIGQEVA 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-P 183
           + GK    +  +      + F  +++ N   +  +Y +   +       +I  A+     
Sbjct: 115 IYGKYNVARQSLTA----FKFVAAKE-NDSGMAPIYPVNRHVKQKKLVDLINVAIDDFID 169

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + + + L Q+            +H+P+ + + E     +    + E    ++ L L+
Sbjct: 170 QVQDIVPEKLRQEYRLLKDQVIIEKMHHPKNSHEAELA---KRSAIFREFFIFELQLALL 226

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            +   K++G     +     ++ +++PF  +  Q+  + +I  DM    +M R+LQGDVG
Sbjct: 227 TRNDGKQMGYAKKYDLTEIAQLTKSLPFELSDDQKHVVNEIFADMHSDGQMRRLLQGDVG 286

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   + V ++TGN     
Sbjct: 287 SGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKTLE 346

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+    +  G  +++IGTHAL QDS+ + KL LVI+DEQHRFGV QR  L  K   P +
Sbjct: 347 RREIYRELTDGTINVVIGTHALIQDSVIFKKLGLVIIDEQHRFGVGQRQALINKGDQPDI 406

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +     +++ EV  +++  L++G 
Sbjct: 407 LAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQLNQGF 466

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I E +  + ++  E    L   F +  + ++HG+M    K+ +M +F  G  
Sbjct: 467 QIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFAAGEI 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ L  P  + 
Sbjct: 527 DILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-TD 585

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +   R+ ++ +T DGF +AEEDLK R EG++ G  QSG+P+F +     + + L +A+K+
Sbjct: 586 SGKARMKIIASTNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDAVNNYNTLVVAQKE 645

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
           A+ ++  DPDL+    ++++ +L
Sbjct: 646 ARALVAADPDLSDPGHKALKQVL 668


>gi|282882055|ref|ZP_06290696.1| ATP-dependent DNA helicase RecG [Peptoniphilus lacrimalis 315-B]
 gi|281298085|gb|EFA90540.1| ATP-dependent DNA helicase RecG [Peptoniphilus lacrimalis 315-B]
          Length = 674

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 237/683 (34%), Positives = 379/683 (55%), Gaps = 20/683 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +   + VG K    L+ I            DLL+++P  + D     K+SE       T 
Sbjct: 7   IKNLKSVGPKRLKLLNSI------GIFSIKDLLYFYPRRYEDSSKILKLSEGIIGEKSTF 60

Query: 73  TGYISQHSSFQ--LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
              I      +   +       L+ D + E  L+FF  +   +KN    G    + GK +
Sbjct: 61  RCRILSLLDNRNLRKGLSITSFLIEDDSAEAKLIFFNNR--FIKNTIDFGETYLIYGKYE 118

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           + + RI +  P     ++   N   I  +Y+   GL+ +    +I + + +  +  E I 
Sbjct: 119 RFRGRIQLTSPEIEKVDNIR-NLGRIRGIYNQTKGLTNNNIDYLIDQVIDK-NLFEECIP 176

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
            DL++K S     +A   IH P   K +  +   ++RL Y+ELL  ++++L M+ +    
Sbjct: 177 NDLIKKYSLIDKNKAIKNIHRPENRKSYALS---KQRLIYEELLFFELSILSMQNKNNSS 233

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            GI  N+  KI +  + N+P+  T  QE  +KDI  DM     + R++QGDVGSGKT+V+
Sbjct: 234 HGIKFNIPNKIYE-FINNLPYKLTSGQEKVLKDITGDMQNGKSVNRLIQGDVGSGKTIVS 292

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           +I    AV  G Q  IMAP  ILA+QH+E      ++  + ++++ G+ P   +++ L  
Sbjct: 293 IILSLVAVLNGYQCAIMAPTEILAKQHFENFNSLLEDYGVRIKLLVGSTPSKVKKEILTN 352

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
            A+G   I+IGTH+L +D ++++ L L ++DEQHRFGV QR KL  K      ++M+ATP
Sbjct: 353 TANGMIDILIGTHSLIEDDVKFFNLGLNVIDEQHRFGVIQRSKLRYKNDKACNIIMSATP 412

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL L    D+DIS I   P GRK IKT+ I  ++++E +  ++  L+ G +AY IC 
Sbjct: 413 IPRTLSLILYADLDISIIDTMPGGRKNIKTLAINSSQVNEALTFIEKELNAGHQAYVICS 472

Query: 491 QIEEKKESNFRSVVER-FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            IE+ ++      VE+ F  L + F    +A++HGR+S  +K  VM+ FKN    L+++T
Sbjct: 473 LIEDNEDFENLESVEKVFKDLKKFFKNYKLALLHGRLSTDEKNKVMEDFKNRKIDLIVST 532

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVGI+V +A++++I NAE FGL+ LHQLRGRVGRG+  S CIL ++   S+ S+ R+
Sbjct: 533 TVIEVGINVANATVMMIYNAERFGLSTLHQLRGRVGRGDAQSYCIL-FNNSKSEISWRRM 591

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            ++ ++ DGF IA +DL+ R  G+ILG++QSG+P   +A P     +L  A  DAK+IL 
Sbjct: 592 KIMTDSTDGFYIANKDLELRGFGDILGVRQSGIPNLRLANPLKDQKILSYASTDAKNILK 651

Query: 669 QDPDLTSVRGQSIRILLYLYQYN 691
           +D DLT  + ++++  +  +Q N
Sbjct: 652 EDIDLTG-KYKNLKKFVDEFQEN 673


>gi|113869065|ref|YP_727554.1| ATP-dependent DNA helicase RecG [Ralstonia eutropha H16]
 gi|113527841|emb|CAJ94186.1| ATP-dependent DNA helicase [Ralstonia eutropha H16]
          Length = 729

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 245/687 (35%), Positives = 373/687 (54%), Gaps = 39/687 (5%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE----ERIVTITGYISQHSS 81
            L+K+         R +DL+ + P  + D      I+E            + G +   + 
Sbjct: 45  RLAKL------GLRRPVDLVLHLPMRYEDETTLAPIAEAIHRAGLGLPAQVEGEVIS-NE 97

Query: 82  FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
              + RR   + + D +GE+TL F        K +  EG ++ V G+++       MVHP
Sbjct: 98  VTFRPRRQLVVKIADDSGELTLRFLNFYGNQTKQM-AEGVRLRVRGEVRGGFFGAEMVHP 156

Query: 142 HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ----KK 197
                   +     +  VY    G+     +K I   LSR P +PE + + +L     + 
Sbjct: 157 TVRPVVPGEALPDRLTPVYPSTAGIPQAYLRKAIGGTLSRTP-MPETLPRAVLDGPLARL 215

Query: 198 SFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
               +A+   ++H P   +      + + PA +R+ +DELLA QI+L       +++   
Sbjct: 216 HLRPLADCLRLLHAPSPQESEAALADRSHPAWQRIKFDELLAQQISLRRAHAARREKTAP 275

Query: 254 PINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            +   EG +  + L  +PF  T +Q+  +++I  DM++ + M R+LQGDVGSGKT+VA +
Sbjct: 276 TMPRREGGLLTRFLAALPFRLTGAQQRVVEEIAADMTRPHPMHRLLQGDVGSGKTIVAAL 335

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           A   A++AG QA +MAP  ILA+QHY  +  + +   + V  + G+     +R+A  R+ 
Sbjct: 336 AACQAIDAGYQAALMAPTEILAEQHYRKLSAWLEPLGVPVAWLAGSQKARDKREAAARVE 395

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-------------- 418
            GQA ++IGTHAL QD++++ KL L +VDEQHRFGV QRL L  KA              
Sbjct: 396 SGQAQLVIGTHALIQDTVRFAKLGLSVVDEQHRFGVAQRLALRGKAGAADTPDSAATAAE 455

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           T PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R+   
Sbjct: 456 TVPHQLMMSATPIPRTLAMTYYADLDVSVIDELPPGRTPIVTRLVNDERRDEVIGRIHHA 515

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
            +EG++ YW+CP IEE +    ++ VE + +L        + ++HGR+   +K +VMD F
Sbjct: 516 AAEGRQVYWVCPLIEESEALQLQTAVETYETLVAALPDLRVGLVHGRLPPAEKAAVMDDF 575

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                ++L+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 576 SANRMQVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAESVCLLMYQ 635

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RL+ ++ T DGF IA  DL+ R  GE LG +QSG      A  +    L+E
Sbjct: 636 APLSPTARERLATMRETTDGFEIARRDLEIRGPGEFLGARQSGEAMLRFADLQTDAWLVE 695

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRIL 684
            A++ A+ +L + P+  +V     R L
Sbjct: 696 YAQEAAELMLARYPE--AVEAHLSRWL 720


>gi|325204743|gb|ADZ00197.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M01-240355]
          Length = 680

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 239/666 (35%), Positives = 362/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAALGGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNTCRKGRQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|291536243|emb|CBL09355.1| ATP-dependent DNA helicase RecG [Roseburia intestinalis M50/1]
          Length = 685

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 231/691 (33%), Positives = 360/691 (52%), Gaps = 17/691 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           +PL   +GVG K      KI            D+L ++P ++I       + E+ +    
Sbjct: 5   SPLREIKGVGAKTEELFHKI------GVYTVGDILLHYPRTYIQYPQAKHVDEVLDGEQA 58

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            + G I++    +  +     +      G  + L+++  +   +KN    G      GK+
Sbjct: 59  AVLGRITRTPVVRKLRTMQITVTTISEMGASLELVWY--RMPYMKNNLKVGSTYIFYGKV 116

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            K   R++M                +   VY+L  GLS +L  K +  AL    +  +++
Sbjct: 117 NKKNGRLVMEQAAMFTEEQYASMEQVFLPVYTLTNGLSNNLVTKTVRAALGDERLFMDYL 176

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              + +K        A   IH P   +D E    AR RL +DE     +++   +++  K
Sbjct: 177 PHAIREKYGLCEYNYAIRQIHFP---EDMETLITARRRLVFDEFFLFILSMQYQKEKHVK 233

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E    +  E     +++  +P+  T +Q+ A+ D+ +DM  +  M R++QGDVGSGKT+V
Sbjct: 234 EKNEFVFAEDDFTDELIEQLPYELTNAQKKALADVKRDMRSETVMQRLIQGDVGSGKTIV 293

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRKA 367
           A +AMA     G Q+ IMAP  +LA+QHYE  +   +     I + ++TG+M    +R+A
Sbjct: 294 AFLAMADTAHNGYQSAIMAPTEVLARQHYESYQSMCEQFGLHIPIVLLTGSMTAKQKRRA 353

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            E +      +IIGTHAL Q+   Y  L LVI DEQHRFGV+QR     K T PHVL+M+
Sbjct: 354 YEALEVYSNAMIIGTHALIQEKAIYQNLALVITDEQHRFGVRQRETFAGKGTEPHVLVMS 413

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +   GD+DIS I E PA R PIK  ++      +    ++  + EG +AY 
Sbjct: 414 ATPIPRTLAIIIYGDLDISVIDEVPAKRLPIKNCVVDRRYRPKAYAFIEHEIREGHQAYV 473

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP +EE +     +V +    L E       I ++HG+M    K  +MD F     ++L
Sbjct: 474 ICPLVEESENMEAENVTDYAKRLREELPEDIVIGVLHGQMKAEQKNKIMDQFVKNEIQVL 533

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CI + +   SKNS 
Sbjct: 534 VSTTVVEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGDAQSYCI-MVNASDSKNSM 592

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL +L  + DGF IA EDLK R  G+  GI+QSG  +FL+A      S+L+ A ++ + 
Sbjct: 593 KRLDILNKSNDGFKIASEDLKLRGPGDFFGIRQSGEMQFLLADIYQDASVLQQASEEVQD 652

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
           +L  DP+L      +++  L ++  ++  + 
Sbjct: 653 LLATDPELCEEENINLQHYLEIFFEDQKSRL 683


>gi|116873246|ref|YP_850027.1| ATP-dependent DNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742124|emb|CAK21248.1| ATP-dependent DNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 682

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 237/680 (34%), Positives = 380/680 (55%), Gaps = 23/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G I   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 61  VQGEILTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKIIVGEIVTISGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            K + +I           +++     +E VY L   L     +K    A       + E 
Sbjct: 119 DKSRAQITASKIKLGAVENEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSKDIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P+  ++      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPTNLLEKYQLIDRLEAVRILHFPKNNEEL---KQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKRRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSVDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRILREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYVPGLMHGKLLPADKEQIMRDFNDKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK-TEVGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H
Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVH 650

Query: 666 ILTQDPDLTSVRGQSIRILL 685
           ++ ++  L +     +  LL
Sbjct: 651 MIFEENMLENKVYAKLVALL 670


>gi|78065288|ref|YP_368057.1| ATP-dependent DNA helicase RecG [Burkholderia sp. 383]
 gi|77966033|gb|ABB07413.1| ATP-dependent DNA helicase RecG [Burkholderia sp. 383]
          Length = 777

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 245/696 (35%), Positives = 375/696 (53%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K    L+K+        TR IDL+ + P  + D      I E+    I    G +   + 
Sbjct: 93  KTVDKLAKL------GLTRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQAEGVVFD-NE 145

Query: 82  FQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + + D  GE + L F       +K +   G+++ V G ++     + MVH
Sbjct: 146 VAYRPRRQLVVKIQDDDGEHLVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGMEMVH 204

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P      +      ++  VY    G+S    +K I  A+ R P LPE +  ++    L+ 
Sbjct: 205 PAVRVVEADAPLPQVLTPVYPSTAGVSQAYLRKAIENAVERTP-LPELLPPEIQRDYLKP 263

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P++ +A  I+H+PR   D     + + PA  R+ ++ELLA Q++L    ++ +    
Sbjct: 264 LDVPTLEQAVRILHHPRVDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAA 323

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +             ++   +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT
Sbjct: 324 PAMPRRTATDADSLTTRLYGALPFTLTGAQARVVDEIANDLTLAHPMQRLLQGDVGSGKT 383

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A   A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 384 VVAALAATQAIDAGYQAALMAPTEILAEQHARKLRAWLEPLGVTVAWLAGSLKAKEKRAA 443

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           +E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 444 IEAAALGTAQLVIGTHAIIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARD 503

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+++S I E P GR P+ T ++   R +EVI R++  
Sbjct: 504 FQPHQLMMSATPIPRTLAMTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREA 563

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR+S  DK +VM++F
Sbjct: 564 ALTGRQVYWVCPLIEESETLQLQTAVETYETLATALPELKVGLVHGRLSPADKAAVMEAF 623

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 624 TRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYT 683

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L++
Sbjct: 684 GPLSLTGRERLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLID 743

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   P++ +      R L    QY +A
Sbjct: 744 PARDAATRLIAAYPEIVTQ--HLARWLGAREQYLKA 777


>gi|325133693|gb|EGC56350.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M13399]
 gi|325143874|gb|EGC66189.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M01-240013]
          Length = 680

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 239/666 (35%), Positives = 362/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAALGGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|83719281|ref|YP_441827.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis E264]
 gi|83653106|gb|ABC37169.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis E264]
          Length = 859

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 256/696 (36%), Positives = 381/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 175 KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 227

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 228 IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 286

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 287 PSVRVVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALTRTP-LPELLPPEVARAYLQP 345

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              PS+A+A  I+H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 346 LDVPSLADAVRILHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 405

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +    +      + ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT
Sbjct: 406 PAMPRRARDDGASLSARLYAALPFTLTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKT 465

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 466 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKDKRAA 525

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           LE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 526 LEAAALGTARLVIGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAG 585

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R++  
Sbjct: 586 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREA 645

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F
Sbjct: 646 ALAGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAF 705

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 706 SRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYS 765

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 766 GPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIE 825

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A H++   PD+ +      R L    QY +A
Sbjct: 826 PARDAAAHLIAGHPDVVAQ--HLARWLGAREQYLKA 859


>gi|225568064|ref|ZP_03777089.1| hypothetical protein CLOHYLEM_04137 [Clostridium hylemonae DSM
           15053]
 gi|225163160|gb|EEG75779.1| hypothetical protein CLOHYLEM_04137 [Clostridium hylemonae DSM
           15053]
          Length = 684

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 232/667 (34%), Positives = 359/667 (53%), Gaps = 18/667 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +   +G+G K      ++            DL+ Y+P  +        ISE  E  +VT+
Sbjct: 15  IKELKGIGDKTEKLFGRL------GIATVGDLVRYYPRGYDVYDDPVPISEAEEGSVVTV 68

Query: 73  TGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           TG I  +      +  +   I + D TG + +++F  +   L+N   +G  IT+ G+I  
Sbjct: 69  TGAIFGRVQVSGTRNMQVTTIYVKDITGTLKVIWF--RMPFLRNTLAKGGVITLRGRIVN 126

Query: 132 LKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
            K+ I+M HP   + +++ +     ++ VY+L  GLS +   K + +AL  L +  E + 
Sbjct: 127 RKSGIVMEHPEIFYPSAKYEEKLHTLQPVYALTAGLSNNAVMKAVQQALMELDLTKETLP 186

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
            ++  K        A   IH P   +D E     RERL ++E L   +AL  ++   +KE
Sbjct: 187 DEIRLKYKLAEYNYAIRGIHFP---EDKEVFYHVRERLVFEEFLEFILALRRLKDSNEKE 243

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
                  +       L  +P+  T +Q+   ++I  DM+  + M R++QGDVGSGKT+VA
Sbjct: 244 QNHYPVKKAPETAAFLSQLPYELTGAQKKVAEEISADMAGASAMSRLVQGDVGSGKTIVA 303

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII--VEIITGNMPQAHRRKAL 368
           ++A+     +G Q  +MAP  +LA+QHYE I        I    E++TG+M    +R+A 
Sbjct: 304 VLALMDTAFSGYQGALMAPTEVLARQHYESITNLFSQYGIRLGAELLTGSMTAKEKREAY 363

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            RI  G+  II+GTHAL Q+ + Y  L LV+ DEQHRFGV+QR    +K   PH+L+M+A
Sbjct: 364 GRIESGEVQIIVGTHALIQEKVNYKNLALVVTDEQHRFGVKQREAFARKGGVPHILVMSA 423

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +   GD+DIS I E PA R PIK  ++           +K  + EG++ Y I
Sbjct: 424 TPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVDTGYRKTAYTFMKNQVKEGRQCYVI 483

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP +EE +     +V++    L +    ++ +  +HGRM   +K+ +M+ F     ++L+
Sbjct: 484 CPMVEESEHLEVENVMDYAQMLQDELGEAVGVACLHGRMKQAEKDDIMERFGRNEIQVLV 543

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVGIDV +A+++++ENAE FGLAQLHQLRGRVGRG   S CI +     SK +  
Sbjct: 544 STTVIEVGIDVPNATVMLVENAERFGLAQLHQLRGRVGRGRHQSYCIFM-SASRSKETKE 602

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL +L  + DGF IA EDLK R  G++ GI+QSG+  F +        LL+ A + A  +
Sbjct: 603 RLDILNKSNDGFKIASEDLKLRGPGDLFGIRQSGLMDFRLGDVFQDAQLLKKANEAADLL 662

Query: 667 LTQDPDL 673
           L  + + 
Sbjct: 663 LNNEKEW 669


>gi|257137995|ref|ZP_05586257.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis E264]
          Length = 857

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 256/696 (36%), Positives = 381/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 173 KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 225

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 226 IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 284

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 285 PSVRVVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALTRTP-LPELLPPEVARAYLQP 343

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              PS+A+A  I+H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 344 LDVPSLADAVRILHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 403

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +    +      + ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT
Sbjct: 404 PAMPRRARDDGASLSARLYAALPFTLTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKT 463

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 464 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKDKRAA 523

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           LE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 524 LEAAALGTARLVIGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAG 583

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R++  
Sbjct: 584 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREA 643

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F
Sbjct: 644 ALAGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAF 703

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 704 SRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYS 763

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 764 GPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIE 823

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A H++   PD+ +      R L    QY +A
Sbjct: 824 PARDAAAHLIAGHPDVVAQ--HLARWLGAREQYLKA 857


>gi|241762220|ref|ZP_04760302.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373267|gb|EER62886.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 692

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 282/708 (39%), Positives = 416/708 (58%), Gaps = 24/708 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA   + +GVG      L K         TR  DLLFY PS  + R    +
Sbjct: 1   MRPDILNPLFAETESLKGVGSALLKPLKK------RQLTRLKDLLFYLPSGQMRRVKSDQ 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFE 119
           ++        T+   ++         R P++IL  D  G +I LL+F   +   + +   
Sbjct: 55  VNAKDVG--ATVILTLTAKEYRHPSGRGPFRILAEDPFGGQIQLLWFGNHSSWARKLMPI 112

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V+GK+   + ++ +VHP  I   S++ + PL E +Y L  GL+     ++I +A 
Sbjct: 113 GETRLVSGKLDIYQEQLQIVHPSEIVPLSEENSIPLEETLYPLSDGLTHRRIGQLIRQAW 172

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
            + P LPEWIE  LL+K  +PS  EA   IH             A+ R+ YDE+ A Q+A
Sbjct: 173 EKSPDLPEWIEPSLLKKHQWPSWREAVERIHQHPDD------RAAKLRIGYDEIFANQLA 226

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+R   +++ G P+  +G +   +  N+PF PT +Q  ++ +I  DM Q + MLR+LQ
Sbjct: 227 LKLIRAANRRKRGFPLKGDGHLRDAL--NLPFQPTGAQRRSLAEIEGDMQQASPMLRLLQ 284

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT VAL ++  A EAG Q  ++AP  ILA+QH+E + +      + + ++TG  
Sbjct: 285 GDVGSGKTWVALHSLLIAAEAGYQGALLAPTEILARQHFETLSQQLAGLPVNIALLTGRD 344

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R   L  +A G  H+++GTHA+FQ+ + Y  L L I+DEQHRFGV QR+ L +KA 
Sbjct: 345 KGKLRESTLMGLADGSIHLLVGTHAIFQEKVSYKNLGLAIIDEQHRFGVAQRMMLAEKAI 404

Query: 420 A-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH+L+MTATPIPR+L+LT+ G++D+S++ E P GR+P++T +I   +I E+I  L   
Sbjct: 405 HTPHLLVMTATPIPRSLMLTAHGEMDVSRLDEMPPGRQPVETRVISSRKIPEIIASLGRH 464

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVV------ERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           ++EG ++YW+CP + E       S        +RF+ L +HF   + ++HG+M   +K+ 
Sbjct: 465 IAEGGQSYWVCPAVGEADIEEAFSPNAIAAAEQRFSLLQQHFGKKVGLVHGKMKPAEKDK 524

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VMD F  G   +L+ATTVIEVG++V +A+++II+ AE FGLAQLHQLRGRVGRG   S C
Sbjct: 525 VMDDFAAGKIAILVATTVIEVGVNVPNATLMIIDQAERFGLAQLHQLRGRVGRGGGRSIC 584

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LL    L+  +  RL++++   DGF +AEEDL+ R  GEILG KQSG   F IA PE  
Sbjct: 585 LLLRSEELTSVARERLALIRECNDGFRLAEEDLRLRGSGEILGTKQSGESHFQIASPEDL 644

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             LL IA  DA+ ++ +D  L+  RGQ+ RI LYL++ +    F+R+G
Sbjct: 645 SELLPIANDDARLLVDRDGGLSGERGQAARIALYLFERDAGVSFLRSG 692


>gi|225869886|ref|YP_002745833.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047]
 gi|225699290|emb|CAW92639.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047]
          Length = 671

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 234/689 (33%), Positives = 372/689 (53%), Gaps = 25/689 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + ++  +G+G K +    K+         +  DLL Y+P  + D   +  + E+ +  
Sbjct: 3   LKSSIANLKGLGPKSAEKFQKL------GIYQIKDLLLYYPFRYEDFKSKSAL-ELLDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              +TG +    S Q    +  ++      GE+ +   +     L       +++ + G+
Sbjct: 56  KAVLTGRVVTPPSVQYYGFKRNRLSFKLKQGELVISVSFFNQPYLLEKIVLDQEVAIFGR 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPVLP 186
             + K  +  +       +        ++ VY +  G+S     K I  A     L  L 
Sbjct: 116 WDQKKAALTGMKLLMTLEDD-------LQPVYHVAQGISQPTLIKAIRSAFDSGALAQLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + L+QK        A   +H P+  +D+     A  R+ ++E    Q+ L +++  
Sbjct: 169 ENLPEPLIQKYRLLPRQAAVYAMHFPKHMEDY---KQALRRIKFEEFFYFQMNLQVLKLA 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K +  G+ I    +   K +  +PFS T++Q+ ++++IL DM+    M R+LQGDVGSG
Sbjct: 226 NKAEGNGLAIPFHQQAVAKKIAALPFSLTRAQQRSLEEILADMTSGAHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT++A +AM AA  AG Q+ +M P  ILA+QHY+ + +      + + ++T  M  A +R
Sbjct: 286 KTVIASLAMYAAQTAGFQSALMVPTEILAEQHYDSLCQLF--PDLSIALLTSGMKAAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
            AL  IA G   +I+GTHAL QD++ Y+KL LVI DEQHRFGV QR    +K   P VL+
Sbjct: 344 AALSAIADGSVDMIVGTHALIQDAVTYHKLGLVITDEQHRFGVNQRRLFREKGNNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++D V+  +K  L++G +A
Sbjct: 404 MTATPIPRTLAITAYGEMDVSIIDELPAGRKPIITRWVKHRQLDSVLAWVKTELAKGTQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ V     L ++F   +S+A++HG+M   DKE +M  FK     
Sbjct: 464 YVISPLIEESETLDLKNAVALEAELKDYFKASASVALMHGKMKADDKEMIMQRFKAKEID 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+I++I NA+ FGL+QLHQLRGRVGRG + S  IL+  P  + +
Sbjct: 524 VLVSTTVIEVGVNVPNATIMLIMNADRFGLSQLHQLRGRVGRGSKQSYAILVADPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R++++  T DGF++AE DLK R  GEI G +QSG+P+F  A       +LE AR+ A
Sbjct: 583 GKERMTIMTTTNDGFVLAEADLKLRGSGEIFGTRQSGLPEFKTADIVEDYHILEEARRVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNE 692
             I+         R   I   L +    +
Sbjct: 643 AEIVAAKDWQLDPRWAPILANLRVADQFD 671


>gi|15677628|ref|NP_274787.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis MC58]
 gi|7227042|gb|AAF42127.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis MC58]
 gi|316984386|gb|EFV63359.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis H44/76]
 gi|325139672|gb|EGC62210.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis CU385]
 gi|325200852|gb|ADY96307.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis H44/76]
          Length = 680

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 239/666 (35%), Positives = 362/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAALGGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|307564986|ref|ZP_07627503.1| ATP-dependent DNA helicase RecG [Prevotella amnii CRIS 21A-A]
 gi|307346299|gb|EFN91619.1| ATP-dependent DNA helicase RecG [Prevotella amnii CRIS 21A-A]
          Length = 699

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 245/700 (35%), Positives = 391/700 (55%), Gaps = 22/700 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            L+ L   +    GVG +    LSK +         + DLL Y+P  +IDR      SE+
Sbjct: 1   MLDILDQDIMYLPGVGPRRKDILSKEL-----GINTYRDLLEYYPYKYIDRTKVYLTSEL 55

Query: 65  SEERI-VTITGYISQHSSFQLQKRRPYKI-LLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           S +   V + G I     + + KR+   +   +DG G   L++F     + KN +  G++
Sbjct: 56  SLDMPFVQLRGKILSFEEYDMGKRKKRIVAHFSDGHGVCDLVWFNGIQYIYKN-YKIGKE 114

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVE 177
             V GK      R    HP     +   +N   ++  Y          LS    +K+   
Sbjct: 115 YIVFGKPGFYNGRFQFTHPDIDDASQLQLNDMGMQPFYVTTEKMKNASLSSRAIEKLTKT 174

Query: 178 ALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            +S+L   L E +   ++   +  S  EAF  IH P+   D   T  AR RL ++EL   
Sbjct: 175 LISKLVSPLEETLPPFIISHLNLISRDEAFRKIHYPKTVND---TQRARMRLKFEELFYV 231

Query: 237 QI-ALLLMRKQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRM 294
           Q+  +    +  +K  G      G+       N +PF+ T +Q+  IK+I  DM    +M
Sbjct: 232 QLNIMRYASEHRRKYRGYEFRRIGEQFNWFYHNNLPFALTNAQKRVIKEIRADMGSGRQM 291

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVGSGKTLVA ++M   ++ G QA  +AP  ILA+QH + I+++  +  + VE+
Sbjct: 292 NRLLQGDVGSGKTLVAFMSMLIGIDNGFQACFVAPTEILAEQHLQTIREFLHDMNLNVEL 351

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG +    R+  LE + +G  +I++GTHA+F+D++ + KL + ++DEQHRFGV QR +L
Sbjct: 352 LTGIVKGKRRKSVLEGLVNGTINILVGTHAIFEDNVHFQKLGIAVIDEQHRFGVAQRAQL 411

Query: 415 TQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             K    PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+    +++  +  
Sbjct: 412 WAKSKQPPHILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIETIHRYDDQMTSLYH 471

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
            ++  +S+G++ Y + P I+E ++S+ +++ E FN+L E F    ++ IHG+M D +KE 
Sbjct: 472 GIRQQVSKGRQVYIVFPLIKESEKSDLKNLEEGFNTLLEVFPDYHLSKIHGKMKDKEKEE 531

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M  F  G  ++L+ATTVIEVG++V +AS++II +A+ FGL+QLHQLRGRVGRG + S C
Sbjct: 532 EMQKFVLGQTQILVATTVIEVGVNVPNASVMIILDAQRFGLSQLHQLRGRVGRGADQSYC 591

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPEL 651
           +L+ +  L+K +  R++V+ +T DGF I+E DLK R  G++ G +QSG+     IA    
Sbjct: 592 VLVTNRKLTKETKKRINVICDTNDGFAISEADLKLRGPGDLEGTQQSGIAFDLKIADIAR 651

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
              L+++AR +A+ I+  DP+ +    + +   L + + N
Sbjct: 652 DGQLVQLARDEAQKIIESDPECSKEEYKMLWDRLKMLRKN 691


>gi|297184106|gb|ADI20225.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 696

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 233/698 (33%), Positives = 363/698 (52%), Gaps = 27/698 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS-EER 68
            +P+    G+G   +  L++               + ++P  ++D+     I  +     
Sbjct: 5   QSPIVYAPGIGPDRAALLAEE-----FGIRTIAQFIEHYPFRYVDKSQFHTIGSLHAHSG 59

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            V I G I +       ++R       DG G I L++F +  + +K        + V GK
Sbjct: 60  EVQIKGQIVKIDELGAPRQRRLVATFTDGEGFIELVWF-KGAKWVKKSLKPNTPMVVYGK 118

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALS-RL 182
           +     +  + HP     +   V    +E VYS        GL+     +++ E L   L
Sbjct: 119 MNDFNGKKSLPHPEIYAPS--QVEDSAVEPVYSTTEKLTKRGLNSKGIARVMKEVLKKEL 176

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
               E   +    K    S  +A N IH P  A+  E     R+R+ ++E    Q+    
Sbjct: 177 GQFEETFSEAFRTKHQLISKIQALNWIHFPPSAQHLEAA---RKRIKFEEFFFLQLTQQR 233

Query: 243 MR-KQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            + +Q     G      G+        ++PF  T++Q+  +K+I  D+    +M R++QG
Sbjct: 234 NKLRQKTAIKGYTFKEVGQFFLNFYSNHLPFKLTQAQKRVVKEIRGDVRTGAQMNRLVQG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+AM  A++ G QA +MAP  ILA QHY  +K+      I V ++TG+ P
Sbjct: 294 DVGSGKTIVALLAMLLAIDNGYQAALMAPTEILATQHYNGLKELCDPAGISVALLTGSTP 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            A R +    +  G   I+IGTHAL + ++++  L L ++DEQHRFGV QR KL +K   
Sbjct: 354 AARRAEIHTGLKEGSLQILIGTHALIEPTVKFANLGLAVIDEQHRFGVAQRAKLWKKNEH 413

Query: 421 P-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           P HVL+MTATPIPRTL ++  GD+DIS I E P GRKP+KT+ +      ++   ++  +
Sbjct: 414 PPHVLVMTATPIPRTLAMSVYGDLDISVIDELPPGRKPVKTLHLFDKNRLKLNGFMQREI 473

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDS 536
           + G++ Y + P IEE ++ + +++   +  L   F      IA++HGRMS  +KE  M  
Sbjct: 474 AAGRQVYVVFPLIEESEKLDLKNLEVGYEQLLRDFPRPQYQIAVVHGRMSAAEKEGEMQR 533

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   +++ATTVIEVG++V +AS+++IENAE FGL+QLHQLRGRVGRG + S CIL+ 
Sbjct: 534 FAKGKANIMVATTVIEVGVNVPNASVMVIENAERFGLSQLHQLRGRVGRGSDESYCILVS 593

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
              LS ++ TRL  +  T DGF IAE D++ R  G+++G +QSG  +F +A       +L
Sbjct: 594 SFKLSSDAKTRLETMVRTSDGFEIAEVDMQLRGPGDLMGTRQSGQLQFKLASLLNDGPIL 653

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIR---ILLYLYQYN 691
              ++  + +L  D  L     QSI+   I LY  Q+ 
Sbjct: 654 NWTKEVVEQLLRNDAQLIHPDHQSIKSRWIELYKDQWG 691


>gi|323486979|ref|ZP_08092293.1| hypothetical protein HMPREF9474_04044 [Clostridium symbiosum
           WAL-14163]
 gi|323692024|ref|ZP_08106272.1| ATP-dependent DNA helicase RecG [Clostridium symbiosum WAL-14673]
 gi|323399691|gb|EGA92075.1| hypothetical protein HMPREF9474_04044 [Clostridium symbiosum
           WAL-14163]
 gi|323503947|gb|EGB19761.1| ATP-dependent DNA helicase RecG [Clostridium symbiosum WAL-14673]
          Length = 696

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 218/691 (31%), Positives = 375/691 (54%), Gaps = 19/691 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+++ +G+G K +   +++            DLL Y+P ++        ISE+  E +  
Sbjct: 17  PVTSLKGIGDKTAGLFARL------GVQTVEDLLHYYPRAYDTFREPQPISELLPETMAA 70

Query: 72  ITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           ++G +++ +   +    +   + + D +G +TL ++      L+     G      G++ 
Sbjct: 71  VSGMLTKTADVVKFGHLQVTTVTVRDISGILTLTWYN--MPYLRGTLKAGEHFIFRGRLV 128

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           + + R+ M  P      +       ++ VY    GL      + + EAL       +++ 
Sbjct: 129 RKRGRLTMEQPEIYRPEAYARLVHSMQPVYGQTKGLGNKTIARTVAEALEVKETEKDYLP 188

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQFKK 249
             L +K        A   IH P+   +  ++   R+RL +DE     +++ L++ K+  K
Sbjct: 189 AALREKYQLAEYNFALEHIHFPKDETELLFS---RKRLVFDEFFMFLLSVRLLKDKKVDK 245

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
               P  ++ +  + + + +P+S T +Q+  + ++ +D+S  + M R++QGDVGSGKT++
Sbjct: 246 ASPCPFKIDNQ-IRGLEQRLPYSLTNAQKKVLDEVYRDLSGGHIMNRLIQGDVGSGKTII 304

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRKA 367
           A++A+  A   G Q  +M P  +LA+QH+E + +      +     ++TG+M    +R A
Sbjct: 305 AVLALLQAAGNGYQGALMVPTEVLARQHFESMNELFTGLGLSARPVLLTGSMTAKEKRLA 364

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            ERIA+ +A II+GTHAL Q+ + Y KL LVI DEQHRFGV QR  L  K   PH+L+M+
Sbjct: 365 YERIANHEADIIVGTHALIQEKVIYDKLALVITDEQHRFGVGQREMLGNKGMEPHILVMS 424

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +   GD+DIS I E PA R+PIK  ++  +  +     ++  + EG++AY 
Sbjct: 425 ATPIPRTLAIIIYGDLDISVIDELPANRQPIKNCVVGRDYRENAYRFIEKEVKEGRQAYV 484

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP +E  +     +VV+   +L EH +    +  +HG+M   +K  +M+ F     ++L
Sbjct: 485 ICPMVEASEMLEAENVVDYTKTLREHLSGDIRVEYLHGKMKAKEKNRLMELFAANEIQVL 544

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVGI+V +A++++IEN+E FGLAQLHQLRGRVGRG+  S CI + +    +++ 
Sbjct: 545 VSTTVIEVGINVPNATVMMIENSERFGLAQLHQLRGRVGRGKAQSYCI-MVNCSGEEDAQ 603

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL +L  + DGF IA EDLK R  G++ G++QSG  +F +A       +L+   ++ K 
Sbjct: 604 KRLEILNKSNDGFFIASEDLKLRGPGDLFGVRQSGDLEFRLADIFTDADILKTVSEEVKM 663

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
           ++ QDP L+S   + ++  L  Y      + 
Sbjct: 664 LMDQDPLLSSGENRELKRKLDDYLERSYEKL 694


>gi|49478911|ref|YP_037916.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330467|gb|AAT61113.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 657

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 221/656 (33%), Positives = 361/656 (55%), Gaps = 17/656 (2%)

Query: 37  NETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLND 96
                  LL + P  + D      ++E+  +  VT+ G +      Q   ++  ++ +  
Sbjct: 2   GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVTVEGKVHSAPLLQYYGKKKSRLTVRV 60

Query: 97  GTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP 154
             G   IT + F R     K        +T+TGK  + +  I +       H    V   
Sbjct: 61  LVGRYLITAVCFNR--PYYKQKLNLDETVTITGKWDQHRQTIAVS----ELHFGPVVRQQ 114

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
            +E VYS+   L+V   ++ I +AL      + E +   LL +       EA   +H P 
Sbjct: 115 EVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEVLPDGLLSRYKLLPRYEALRALHFPT 174

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             +D      AR R  Y+E    Q+ +  L + + +   G    +  +  Q+ +  +PF 
Sbjct: 175 GQEDL---KQARRRFVYEEFFLFQLKMQTLRKMERENSKGTKKEIPSEELQEFIDALPFP 231

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T +Q   + +I++DM+   RM R+LQGDVGSGKT+VA I + AA  A  Q  +M P  I
Sbjct: 232 LTGAQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMVPTEI 291

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QHY+ + +   +  + VE++T ++    RR+ L ++  G+  I++GTHAL QD + +
Sbjct: 292 LAEQHYQSLAETFSHFGMKVELLTSSVKGVRRREILAKLEQGEIDILVGTHALIQDEVIF 351

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           ++L LVI DEQHRFGV QR  L +K  +P VL MTATPIPRTL +T+ G++D+S I E P
Sbjct: 352 HRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMP 411

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           AGRK I+T     + +D V+  ++  +++G++AY ICP IEE ++ + ++ ++  + L  
Sbjct: 412 AGRKVIETYWAKHDMLDRVLGFVEKEINKGRQAYVICPLIEESEKLDVQNAIDLHSMLTH 471

Query: 513 HFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           H+     + ++HGR+S  +KE +M  F     ++L++TTV+EVG++V +A++++I +AE 
Sbjct: 472 HYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAER 531

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FGL+QLHQLRGRVGRG E S C+L+  P  S+    R+ ++  T DGF+++E+DL+ R  
Sbjct: 532 FGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGP 590

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
           G+  G KQSG+P+F +A        LE AR+DA  ++  +    + +  S+R  L 
Sbjct: 591 GDFFGSKQSGLPEFKVADMVHDYRALETARQDAALLVDSEAFWHNDQYASLRTYLD 646


>gi|255029718|ref|ZP_05301669.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes LO28]
          Length = 648

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 233/658 (35%), Positives = 370/658 (56%), Gaps = 23/658 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKISVGETVTISGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
            K + ++           S++     +E VY L   L     +K    A       + E 
Sbjct: 119 DKSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P+  ++      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPGNLLEKYQLMDRLEAVRILHFPKNNEEL---KQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 412 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +     L
Sbjct: 472 ICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNDKKIDCL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  ++   
Sbjct: 532 VSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGVDQSYCILIADPK-TEVGK 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
            R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA
Sbjct: 591 ERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDA 648


>gi|329897890|ref|ZP_08272240.1| ATP-dependent DNA helicase RecG [gamma proteobacterium IMCC3088]
 gi|328921016|gb|EGG28435.1| ATP-dependent DNA helicase RecG [gamma proteobacterium IMCC3088]
          Length = 694

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 255/670 (38%), Positives = 373/670 (55%), Gaps = 20/670 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           +P+S   GVG K +  L+ +         +  DL FY P  + DR     I  + +   V
Sbjct: 16  SPISQLSGVGPKLAEKLATL------GLHQVKDLWFYLPLRYQDRTRLTPIGALQDGSDV 69

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            I G + + ++  L +RR   + L DGTG + L FF+      +    +G  +   G+++
Sbjct: 70  VIEGEV-RLATVTLGRRRSLVVKLQDGTGTLVLRFFHFSRAQ-QQQLKQGLTLRCFGQVR 127

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           +  N   MVHP Y            + A+Y   TG+    ++KI V +L  L V P    
Sbjct: 128 RGANGFEMVHPEYRRVEEGAAMEEALTAIYPTITGIGQTTWRKICVASLQVLTVNP---P 184

Query: 191 KDLLQKKS--FPSIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQIALLLMR 244
            +LL  +      + +A  I+H P              PA+ RLA +EL+A +I+L  +R
Sbjct: 185 DELLPHEQTLGIGLVQAIKILHQPPPDVSLSALANKQHPAQLRLALEELVAHRISLGELR 244

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
               +     I    ++    L+  PF  T +Q+  I +I  D+++   MLR+LQGDVG+
Sbjct: 245 TLQTQHQAPQIPYREELTAAFLKAQPFQATGAQQRVIAEIGHDLTRPTPMLRLLQGDVGA 304

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA  A   A +AG Q  +MAP  +LA+QH+   +++  +++  +  ++G      R
Sbjct: 305 GKTLVAAAAALQAAQAGYQVAVMAPTELLAEQHWRNFERWFGDSKFKLAWLSGKTKGKKR 364

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL--TQKATAPH 422
              L  IA  + +++IGTHALFQ  +++  L LVI+DEQHRFGV+QRL L    KA  PH
Sbjct: 365 EATLAMIATQEVNMVIGTHALFQADVEFKHLGLVIIDEQHRFGVEQRLTLARKGKALRPH 424

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+MTATPIPR+L + +  D+D S I E P GR+ I TV+I  +R   VIER+     EG
Sbjct: 425 QLVMTATPIPRSLSMVAYADLDCSIIDELPPGRQAISTVLIDSSRRASVIERVAHACREG 484

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++AYW+C  IEE ++   ++      SL        I +IHGR+   +KES+M SF  G 
Sbjct: 485 RQAYWVCTLIEENEQLAAQAAEAVSESLQTQLADLRIGLIHGRLKSTEKESIMASFAAGH 544

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L+Y  PLS
Sbjct: 545 LDLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTIASHCVLMYQSPLS 604

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    RL VLK+++DGF IAE+DL  R  GE+LG +Q+G+  F +A+  LH+ LL+ A  
Sbjct: 605 QTGKARLRVLKDSQDGFYIAEQDLLLRGPGELLGTRQTGLMAFRVAELPLHEDLLDSAAA 664

Query: 662 DAKHILTQDP 671
            A  ++ Q P
Sbjct: 665 IADDLMQQRP 674


>gi|30249802|ref|NP_841872.1| RecG-like helicases [Nitrosomonas europaea ATCC 19718]
 gi|30180839|emb|CAD85761.1| RecG-like helicases [Nitrosomonas europaea ATCC 19718]
          Length = 685

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 232/659 (35%), Positives = 366/659 (55%), Gaps = 20/659 (3%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
             L K+            DL+ + P  + D      IS+      V + G +++     +
Sbjct: 15  KKLEKL------GLFSDFDLVLHLPLRYEDETRLSPISQAVPGSTVQVEGVVAE-QEVLV 67

Query: 85  QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
           + RR     ++D +G + L FF      +   +  G ++ V G+++   + + MVHP   
Sbjct: 68  RPRRQLVCRVDDDSGTLYLRFFNFYASQV-TAWSPGTRLRVLGEVRAGFHGVEMVHPKCR 126

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP---VLPEWIEKDLLQKKSFPS 201
                 V    +  VY    GL      ++I++A  RL    +L E +   +L    FP+
Sbjct: 127 VVRGSMVLANTLTPVYPGMAGLPQRTLARLIMQAFERLRAKRLLQETLPATILSACQFPA 186

Query: 202 IAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
             ++ +I+H P          + + PA  R+ +DELLA Q+++     Q + +    +  
Sbjct: 187 FEDSLSILHCPPAGVSITSLQQRSHPAWFRIKFDELLAQQLSMRCHYHQRRSQQAPVLQQ 246

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +  + Q +L  +PF  T +Q   + +I +D++Q   M R+LQGDVGSGKT+VA +A   +
Sbjct: 247 QTGLQQALLEVLPFGLTDAQCKVVTEISKDLAQPYPMQRLLQGDVGSGKTIVAALAALQS 306

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           +  G Q  +MAP  ILA+QH+  +  +     + V  ++G+  ++ R + LER A G+A 
Sbjct: 307 IGNGYQVAVMAPTEILAEQHFRKLSDWLTPLGVGVGWLSGSQKKSLRNQELERTATGEAM 366

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLMTATPIPR 433
           ++IGTHALF++++Q+  L LVI+DEQHRFGV QRL L  K       PH L+M+ATPIPR
Sbjct: 367 LVIGTHALFREAVQFKCLGLVIIDEQHRFGVGQRLALRMKGGDEEVIPHQLMMSATPIPR 426

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL ++   D+D+S I + P GR P+ T +I  +R +E++ R++     G++AYW+CP IE
Sbjct: 427 TLSMSYFADLDVSVIDQLPPGRSPVVTRLIDSSRREEIVARIREACLAGRQAYWVCPLIE 486

Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E +    ++ VE + +L + F    IA+IHGR+   +K  +M  F  G  +LL+ATTVIE
Sbjct: 487 ESEALQLKTAVETYETLSQTFPDLRIALIHGRLDSDEKSVIMAEFSQGEVQLLVATTVIE 546

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV +AS+++IE+AE  GL+QLHQLRGR+GRG     C+L+Y  PLS+ +  RL ++ 
Sbjct: 547 VGVDVPNASLMVIEHAERMGLSQLHQLRGRIGRGSATGVCVLMYQQPLSEVARKRLQIIF 606

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
              DGF IA +DL  R  GE LG +QSG+P    A  E    LLE+AR  A+++L   P
Sbjct: 607 EHRDGFEIARQDLLLRGPGEFLGTRQSGVPLLRFANLEEDIDLLEMARNAAENMLRDHP 665


>gi|227530549|ref|ZP_03960598.1| DNA helicase RecG [Lactobacillus vaginalis ATCC 49540]
 gi|227349555|gb|EEJ39846.1| DNA helicase RecG [Lactobacillus vaginalis ATCC 49540]
          Length = 679

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 232/669 (34%), Positives = 358/669 (53%), Gaps = 22/669 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            +  L  P+S  +GVG K    L+ +      N     DLL Y+P+ + D      +S +
Sbjct: 1   MMKSLQDPVSVLKGVGPKRVADLATL------NIDTIEDLLTYYPTRYDDFTA-NDLSTV 53

Query: 65  SEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            +++ VTI G I     F     +R      L  G   +   FF +    LK      R+
Sbjct: 54  KDKQRVTIKGKIVSEPLFSRFGYRRNRLSFRLQVGQQVVMATFFNQ--PYLKKQVELDRQ 111

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           +TV GK    + ++           +         A+Y     L     + +I +A    
Sbjct: 112 VTVMGKWDASRQQVTGT----KLVTATGTPENEFGAIYPTNKHLRQSTLRSLIRQAYEDY 167

Query: 183 P-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
             V+P  +   L QK       E    +H P           AR    Y+E    Q+ L 
Sbjct: 168 QRVIPTLLPTFLRQKYRLLDRREMIKDLHFPGSQ---MIAKAARRTATYEEFFLFQLRLQ 224

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R+  ++E G  I       ++ +  +PF  T +Q+  + +I +D+ Q  +M R+LQGD
Sbjct: 225 AIRRAHRQEDGTRILYHNDELKEFISQLPFELTNAQKKVVNEICRDLRQPIQMNRLLQGD 284

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA IA+ A + AG QA +MAP  ILA QH E + K    T + V ++TG++  
Sbjct: 285 VGSGKTIVAAIAIYATISAGYQAALMAPTEILATQHAEKLAKVFAGTHVHVGLLTGSLTA 344

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
              R+ +  I  G  ++IIGTHAL Q  ++Y  L LVI DEQHRFGV QR +L +K   P
Sbjct: 345 KQHRELVGAIKKGDINLIIGTHALIQSDVEYANLGLVITDEQHRFGVNQRQQLREKGEHP 404

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL +TS G++D+S I + PAGRKPI+T  +   + ++ ++ L+  L+ 
Sbjct: 405 DVLAMTATPIPRTLAITSYGEMDVSVIDKLPAGRKPIETRWLKDKQSNDALKFLRQQLAS 464

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKN 539
           G +AY + P IEE +  + ++  + +  L  +F     + ++HGR++   K++VM  F++
Sbjct: 465 GAQAYVVSPLIEESEALDVQNATDLYERLANYFQPDYQVGLLHGRLNGEKKDAVMKDFQD 524

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L++TTV+EVG+D  +A+++II NA+ FGLAQLHQLRGRVGRGE  S C+L+  P 
Sbjct: 525 GKIQVLVSTTVVEVGVDNPNATVMIIYNADRFGLAQLHQLRGRVGRGERQSYCLLIADPK 584

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +     R+  +  T DGF +A+ DL+ R  G++LG KQSG+P F +  P     +L+IA
Sbjct: 585 -TDEGTARMKTMVATTDGFKVAQRDLELRGAGDVLGAKQSGLPDFKVGDPIGDLKILQIA 643

Query: 660 RKDAKHILT 668
           ++DA ++L 
Sbjct: 644 KEDAANLLA 652


>gi|323143100|ref|ZP_08077802.1| ATP-dependent DNA helicase RecG [Succinatimonas hippei YIT 12066]
 gi|322417125|gb|EFY07757.1| ATP-dependent DNA helicase RecG [Succinatimonas hippei YIT 12066]
          Length = 710

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 246/671 (36%), Positives = 372/671 (55%), Gaps = 26/671 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVT 71
           +S  +GVG K S  L+++            DL+F+ P  + DR Y  K+S+++ +   V 
Sbjct: 13  VSNLKGVGPKISSSLNRLK------IFSLFDLIFHFPFRYQDRTYISKVSDLTTDSGSVL 66

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG--KI 129
           +   +     F   + +  KIL  D TG I   FF      + N F  GR++   G  K 
Sbjct: 67  LCLKVKAVEGFVGSRGKVLKILFADDTGIIEASFFNTYATFVHN-FTSGRRVLAYGSIKP 125

Query: 130 KKLKNRIIMVHPHYIFHNSQDV--NFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPVL 185
             +  R  +VHP   F  + +       +  +YS   GL   + +K I  AL   +   L
Sbjct: 126 DYMTGRPSLVHPEITFLQTNETVTTEEFLTPIYSSTEGLGQAILRKTIKTALDLIQKAPL 185

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR----ERLAYDELLAGQIALL 241
           PE + K+L       S+++A   +H P    D     P +    ER+ Y+EL+A Q+ LL
Sbjct: 186 PEILPKNL-NPYG-MSLSDAIKGVHYPHPQSDHTPIVPQKLTSFERICYEELIAYQLCLL 243

Query: 242 LMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L++      +  + +  + K++   L ++PF PT +Q     +IL+D+++   M R++ G
Sbjct: 244 LLKVSNSSHKAALSVAFDSKLSDDFLHSLPFKPTLAQLKVFNEILEDLNKDIPMARLVHG 303

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA+++    ++AGGQ V+++P  ILA+QH+       +   +   ++T +  
Sbjct: 304 DVGSGKTLVAIMSALQVIKAGGQCVLLSPTDILARQHFAKCSSLLKEFNVNCLLLTASER 363

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418
           ++ R   L+ I+ G A  IIGTHA+FQD + Y  L LVI+DEQHRFG++QR+ L  KA  
Sbjct: 364 KSDRLNLLKAISDGSAQFIIGTHAVFQDDVIYKHLALVIIDEQHRFGIEQRIALLNKAPQ 423

Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            T+ H L+MTATPIPRTL L    D+++S I E P GR P+ T +I ++R D+VI RL  
Sbjct: 424 GTSAHQLVMTATPIPRTLQLALYSDLEVSTIDELPPGRCPVITALIQMSRKDDVIARLNA 483

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDS 536
           V S G +AYW+CP IEE +  +  S    +  +        I ++HG+M+   K  VM+ 
Sbjct: 484 VCSRGTQAYWVCPHIEEGENDDVASAKSIYEEISHKLPHLKIGLLHGQMNAKQKNMVMED 543

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   +L ATT+IEVG+DV +A+I+II NAE  GLAQLHQLRGRVGRG   S C+LL+
Sbjct: 544 FAAGKISILAATTIIEVGVDVPNATIMIINNAERLGLAQLHQLRGRVGRGSAQSYCLLLH 603

Query: 597 H-PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           +  P ++ +  RL +++ + DGF IA EDL  R  GEI+G KQ+G   F +A       L
Sbjct: 604 NADPENQIAQKRLQIMRTSNDGFKIATEDLALRGPGEIIGTKQAGFDTFKVADVTRDHRL 663

Query: 656 LEIARKDAKHI 666
           +E AR  A ++
Sbjct: 664 IESARNSALYL 674


>gi|218767626|ref|YP_002342138.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis Z2491]
 gi|121051634|emb|CAM07935.1| putative DNA helicase [Neisseria meningitidis Z2491]
 gi|319409884|emb|CBY90199.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis WUE 2594]
          Length = 680

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 239/666 (35%), Positives = 362/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAIGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAALGGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|254253194|ref|ZP_04946512.1| RecG-like helicase [Burkholderia dolosa AUO158]
 gi|124895803|gb|EAY69683.1| RecG-like helicase [Burkholderia dolosa AUO158]
          Length = 792

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/696 (36%), Positives = 377/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      I E+    +    G +   + 
Sbjct: 108 KTADKLAKL------GLTRSIDLVLHLPMRYEDETTLTPIGELLPGGVAQTEGVVID-NE 160

Query: 82  FQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + + D  GE + L F       +K +   G+++ V G ++     + MVH
Sbjct: 161 VAYRPRRQLVVKIRDDDGEQLVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGMEMVH 219

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P      +      ++  VY    G+S    +K I  AL R P LPE +  ++    LQ 
Sbjct: 220 PAVRVVEADAPLPQVLTPVYPSTAGVSQAYLRKAIDNALERTP-LPELLPPEIDRAYLQP 278

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              PS+A+A  ++H+P    D     + + PA  R+ ++ELLA Q++L    ++ +    
Sbjct: 279 LGVPSLAQAVRMLHHPGVDADEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAA 338

Query: 253 IPINVEGKIAQ-----KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +             ++   +PF  T +Q   + +I  D++  + M R+LQGDVGSGKT
Sbjct: 339 PAMPRRAAADADALTTRLYAALPFKLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKT 398

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 399 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAA 458

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           +E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 459 IEAAALGTAQLVIGTHAIIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARD 518

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR P+ T ++   R DEVI R++  
Sbjct: 519 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPVLTRVVGDARRDEVIARVREA 578

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR+S  DK +VMD+F
Sbjct: 579 ALTGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAF 638

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 639 TRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYS 698

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 699 GPLSIAGRERLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIE 758

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR+ A  ++   PD+ +      R L    QY +A
Sbjct: 759 PAREAAARLIAAYPDVVTQ--HLARWLGAREQYLKA 792


>gi|325206697|gb|ADZ02150.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M04-240196]
          Length = 680

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 239/666 (35%), Positives = 361/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H P  +       + T PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHLPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAALGGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|53803678|ref|YP_114457.1| ATP-dependent DNA helicase RecG [Methylococcus capsulatus str.
           Bath]
 gi|53757439|gb|AAU91730.1| ATP-dependent DNA helicase RecG [Methylococcus capsulatus str.
           Bath]
          Length = 691

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 245/675 (36%), Positives = 361/675 (53%), Gaps = 19/675 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            L   +G G K    L+K+         +  DLL + P  + DR     +  +   +   
Sbjct: 11  SLDNLQGAGTKTLSRLNKL------GIFKLQDLLLHLPIRYEDRTRLTPLGALQPGQPAL 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G ++  +      RR     ++DGTG + L FF+ + E L+      R+I   G+++ 
Sbjct: 65  VEGGVA-FTDVAGTSRRSLICRISDGTGFLDLRFFHFRPEQLR-ALSSLRRIRCFGEVRV 122

Query: 132 LKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW- 188
             + + M+HP Y              +  VY    GLS    ++ + +AL       E  
Sbjct: 123 GVHGLEMIHPQYEALPETAPAPLETGLTPVYPTTDGLSQQSLRRFVAQALRLAEPEHEKS 182

Query: 189 --IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
             +   L  +    S  +A   +H P            R RLAY+ELLA  ++L   R++
Sbjct: 183 FRLPPRLAPELDALSWWDAVRTLHRPMDDCPKALERA-RRRLAYEELLAHHLSLARFRQE 241

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            ++     +N +  I       +PFS T +Q   I +I  D+     MLR+LQGDVGSGK
Sbjct: 242 IRRRSAPVLNTDEAIKTTFQSGLPFSLTGAQRRVIGEIESDLRSGRPMLRLLQGDVGSGK 301

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA  A  AA  +G Q  +MAP  +LA+QH+     + +++ +   ++TG +    RR+
Sbjct: 302 TIVAAHAALAAASSGWQTALMAPTELLAEQHFHTFSGWLESSGVTTTLLTGKIKGQGRRE 361

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PH 422
           AL  IA G   ++IGTHALFQD++++++L L I+DEQHRFGV QRL L  KA      PH
Sbjct: 362 ALAAIASGATALVIGTHALFQDAVEFHRLGLTIIDEQHRFGVHQRLALRDKAHPLAALPH 421

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+MTATPIPRTL +    D+D S + E P GR P+ T +IP  R  E+I+R+   ++ G
Sbjct: 422 QLVMTATPIPRTLAILGYADLDCSVLDELPPGRTPVVTRLIPSTRRGEIIDRIANWIARG 481

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++AYW+C  I+E +     +      SL +      I ++HGRMS  +K+ VM  FK G 
Sbjct: 482 RQAYWVCTLIDESEALQCEAAANTAASLAQTLPGLRIRLLHGRMSAAEKDGVMREFKAGE 541

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ATTVIEVG+DV +A ++IIEN E  GLAQLHQLRGRVGRG   + CILLY PPLS
Sbjct: 542 SDILVATTVIEVGVDVPNAGLMIIENPERLGLAQLHQLRGRVGRGPGDAYCILLYQPPLS 601

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                RL +LK++ DGF IAE DL+ R  GE LG++Q+G+ +F IA       L+E    
Sbjct: 602 AIGRERLKILKDSSDGFAIAERDLRLRGPGEFLGVRQTGLARFRIADLTRDADLIETVSA 661

Query: 662 DAKHILTQDPDLTSV 676
            A+ +L   P+L + 
Sbjct: 662 SAERVLEHHPELVAP 676


>gi|34496388|ref|NP_900603.1| ATP-dependent DNA helicase RecG [Chromobacterium violaceum ATCC
           12472]
 gi|34102241|gb|AAQ58607.1| ATP-dependent DNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 682

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 241/652 (36%), Positives = 361/652 (55%), Gaps = 14/652 (2%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
             L K+         R  DL+ + P  + D  +   I++    +   + G ++ H     
Sbjct: 20  KKLEKL------GIRRRFDLVLHLPLRYEDETHIYPIADAPYGQPALVEGTVTAH-EVSY 72

Query: 85  QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
           + R+  ++ + DG+G + L F +     LK  F EG +I   G+I++      MVHP   
Sbjct: 73  KPRKQLRVQIEDGSGTLMLRFIHFYPSQLKQ-FAEGSRIRALGEIRRGFAGDEMVHPKTR 131

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
                      +  VY    GL+  + +K++   L     L E +   L+   +    A+
Sbjct: 132 EVREGAPLADSLTPVYPTVNGLTQPVLRKLVHAELKS-QRLDELLPAPLMAPLALQPFAD 190

Query: 205 AFNIIHNPRKAKDFEWTSPAR----ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260
           A  ++H P      +  +  R    +RL +DELLA Q+++ L  +  +      I  +G 
Sbjct: 191 AIRLLHQPPPEWSAQQLADPRLPAWQRLKFDELLAQQLSMRLAYRARRLGHAPRIAGDGS 250

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           ++ K+L ++PF  T +Q   + +I  D+ Q + M R+LQGDVGSGKT+VA +A  +A+EA
Sbjct: 251 LSGKLLASLPFQLTGAQRRVLDEIRADLRQPHPMHRLLQGDVGSGKTIVAALAALSAIEA 310

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q  +MAP  ILA+QHY  +  +     + V  ++G++ +  +++AL+ IA GQ  + +
Sbjct: 311 GYQVALMAPTEILAEQHYLKLSGWLAPLGLGVSWLSGSLRKKAKQQALDEIASGQCRLAV 370

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTHALFQD + + KL L IVDEQHRFGV QRL L  K   PH L+M+ATPIPRTL ++  
Sbjct: 371 GTHALFQDDVAFQKLGLAIVDEQHRFGVGQRLALQDKGEEPHQLMMSATPIPRTLAMSFY 430

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D+D+S I E P GR PI T +I   R  EV++ ++   +EG +AYW+CP IEE +    
Sbjct: 431 ADLDVSAIDELPPGRTPIVTKLIGSPRRAEVVQFVEKTCAEGNQAYWVCPLIEESEALQL 490

Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           ++ V+    L +      I ++HGRM   +K   M +F  G   +L+ATTVIEVG+DV +
Sbjct: 491 QTAVDCHQQLQQDLPGRRIGLVHGRMKAAEKAEAMAAFGAGQLDVLVATTVIEVGVDVPN 550

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           AS+++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS  +  RL V+    DGF 
Sbjct: 551 ASLMVIEHAERMGLAQLHQLRGRVGRGSARSVCVLLFENPLSDLAKARLKVIYENTDGFE 610

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           IA +DL+ R  GE LG +QSG+P    A  E   +LLE AR  A  +L + P
Sbjct: 611 IARQDLQIRGPGEFLGARQSGLPMLRFADLEQDQALLEAARDLAPVLLERWP 662


>gi|282858677|ref|ZP_06267833.1| ATP-dependent DNA helicase RecG [Prevotella bivia JCVIHMP010]
 gi|282588530|gb|EFB93679.1| ATP-dependent DNA helicase RecG [Prevotella bivia JCVIHMP010]
          Length = 699

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 242/690 (35%), Positives = 379/690 (54%), Gaps = 22/690 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            L+ L   +    GVG +    LSK +         + DLL Y+P  +IDR     ISE+
Sbjct: 1   MLDILDQDIMYLPGVGPRRKDILSKEL-----GINTYRDLLEYYPYKYIDRTKVYLISEL 55

Query: 65  SEERI-VTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           S++   V I G I     + + +R+       +DG G   L++F   T+ +   +  G++
Sbjct: 56  SQDMPFVQIKGKILSFEEYDMGRRKKRIIAHFSDGHGVCDLVWFN-GTQYVYKNYQVGKE 114

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVE 177
             V GK      R    HP     +   +N   ++  Y          LS    +K+   
Sbjct: 115 YVVFGKPGFYNGRFQFTHPDIDDASQLQLNDMGMQPFYVTTEKMKNASLSSRAMEKLTKV 174

Query: 178 ALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            +S+L   L E +   +       S  EAF  IH P+  +D   T  AR RL ++EL   
Sbjct: 175 LISKLTTPLEETLPPFITTHLHLISRDEAFRKIHYPKSVED---TQRARMRLKFEELFYV 231

Query: 237 QIALLLMRK-QFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRM 294
           Q+ +L       +K  G      G+       + +PF+ T +Q+  +K+I  DM    +M
Sbjct: 232 QLNILRYASDHHRKYRGYAFKRIGEQFNWFYHHNLPFALTNAQKRVMKEIRADMGSGRQM 291

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVGSGKTLVAL++M   V+ G QA ++AP  ILA+QH + I+++     + VE+
Sbjct: 292 NRLLQGDVGSGKTLVALMSMLIGVDNGFQACLVAPTEILAEQHLQTIREFLHGMNLRVEL 351

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG +    R+  LE +  G  HI++GTHA+ ++++ + KL + ++DEQHRFGV QR +L
Sbjct: 352 LTGIVKGKKRKAILEGLVDGTIHILVGTHAILEETVAFQKLGVAVIDEQHRFGVAQRARL 411

Query: 415 T-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             +    PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T+    ++   + +
Sbjct: 412 WTKSEQPPHVLVMTATPIPRTLAMTIYGDLDVSIIDELPPGRKPIATIHKYDDQTTSLYQ 471

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
            ++  +  G++ Y + P I+E ++S+ +++ E + +L E F    ++ IHG+M D +KE 
Sbjct: 472 GIRQQILRGRQVYIVFPLIKESEKSDLKNLEEGYITLKEAFPEFHLSKIHGKMKDKEKEE 531

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M  F  G  ++L+ATTVIEVG++V +AS+++I +A+ FGL+QLHQLRGRVGRG + S C
Sbjct: 532 EMQKFVLGQTQILVATTVIEVGVNVPNASVMVILDAQRFGLSQLHQLRGRVGRGAQQSYC 591

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPEL 651
           IL+ +  L+K +  R+ V+  T DGF IAE DLK R  G++ G +QSG+     IA    
Sbjct: 592 ILVTNHKLTKETKKRIDVICGTNDGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIAR 651

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
              L+++AR +A++I+  DP       Q +
Sbjct: 652 DGQLVQMARDEARNIIETDPTCNKSEYQML 681


>gi|256851309|ref|ZP_05556698.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 27-2-CHN]
 gi|260660733|ref|ZP_05861648.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 115-3-CHN]
 gi|282933246|ref|ZP_06338633.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 208-1]
 gi|297206179|ref|ZP_06923574.1| DNA helicase RecG [Lactobacillus jensenii JV-V16]
 gi|256616371|gb|EEU21559.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 27-2-CHN]
 gi|260548455|gb|EEX24430.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 115-3-CHN]
 gi|281302750|gb|EFA94965.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 208-1]
 gi|297149305|gb|EFH29603.1| DNA helicase RecG [Lactobacillus jensenii JV-V16]
          Length = 674

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 215/672 (31%), Positives = 363/672 (54%), Gaps = 21/672 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            LN LF P++  +GVG K +  L  +            DLLFY P  + D      + ++
Sbjct: 1   MLNNLFEPVTRLKGVGPKTAAALESLS------IYSIYDLLFYFPYRYDDLEMI-PLDQL 53

Query: 65  SEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           ++ + V + G I+          K+      L      I + FF +    LK+    G++
Sbjct: 54  NDGQKVLLKGIIATEPFVSRFGYKKSRLSFKLRIDHDIIMVNFFNQ--PWLKSQLEVGKE 111

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           + V GK    K  +      ++   S+  +   +  VY +   +      ++I  AL++ 
Sbjct: 112 VAVYGKYNLAKQSLSGFK--FVAAKSEKSS---LSPVYPVNRHIKQKKLIELIKLALAQK 166

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             L + + +++ QK    +  E    +H P+   +      A+    + E    Q+ L L
Sbjct: 167 QELMDIVPEEIRQKYRLMNDQELVEKMHEPKSPNE---AKLAKRSAIFREFFIFQVQLAL 223

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +  + +  +G     +    +K+   +PF  +  Q+  I ++  D+ QK +M R+LQGDV
Sbjct: 224 LTMRPQGRLGTAKKYDLNEIKKLTNTLPFELSADQKKVINELFADLHQKRQMRRLLQGDV 283

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA+  + AA+ AG QA +M P  ILA QH+  I +  +   + + ++T +    
Sbjct: 284 GSGKTVVAVFGIYAAITAGYQAALMVPTEILANQHFGKIDELLRPFGVRIALLTSSTKTM 343

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R+    +A G  +++IGTHAL Q  +++ KL LVI+DEQHRFGV QR KL  K   P 
Sbjct: 344 EKREIYRELADGTLNVVIGTHALIQPGLKFKKLGLVIIDEQHRFGVNQRQKLMIKGENPD 403

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L MTATPIPRTL LT+ G++D+S+I   PAGRKPI +  I  + +D+V+ ++K  LS+G
Sbjct: 404 LLAMTATPIPRTLALTAYGEMDVSEIRHLPAGRKPIVSAWITSSHLDQVLAKMKEQLSQG 463

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGT 541
            + Y + P IEE +  + ++  E    L  +F    + ++HG+M+  +K+ +M  F  G 
Sbjct: 464 FQIYVVTPLIEESENIDLKNAKELCLKLQSYFNHEKVVLLHGQMNGEEKDQIMTEFSQGD 523

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG+  S C  +  P  +
Sbjct: 524 INILVATSVIEVGVDVPNANMMVIFDADRFGLSQLHQLRGRIGRGKTESFCYFVADPK-T 582

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                R+ ++ +T +GF ++EEDLK R +G++ G  QSG+P+F +       + + +A+ 
Sbjct: 583 DIGKKRMEIISSTSNGFKLSEEDLKLRGQGDLFGKAQSGIPEFRLGDLVNDYNTMVVAQN 642

Query: 662 DAKHILTQDPDL 673
            A+ ++  DPDL
Sbjct: 643 VARQLVKTDPDL 654


>gi|225010853|ref|ZP_03701321.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium MS024-3C]
 gi|225005061|gb|EEG43015.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium MS024-3C]
          Length = 701

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 240/689 (34%), Positives = 377/689 (54%), Gaps = 27/689 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P++  + VG   +  L +           + DLL + P+ ++DR     I+++   +
Sbjct: 6   LQTPIAYLKTVGPTRAKLLKE-----QLGIHTYQDLLHFFPNRYVDRTQFHHINQLEASQ 60

Query: 69  -IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V I G I+Q  +   +K         D TG + L++F +  + +K          + G
Sbjct: 61  AEVQIVGVITQIETITQKKGSRLVAKFLDNTGAMELVWF-KGAKWIKESIKTNTPYVIFG 119

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLF-KKIIVEALSRL--- 182
           KI   + R  M HP      +   N    ++A+Y     LS      + ++ A+ +L   
Sbjct: 120 KISVFQGRFNMAHPDMELLENYQANNRMGLQAIYPSTERLSNANMGNRFMLRAMEQLFNE 179

Query: 183 --PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
                 E +   +L+       + A   IH P+ AK     +    RL ++EL   Q+  
Sbjct: 180 CGSAFKETLSASILENLKLLQRSTALFHIHFPKDAKMLSRAAA---RLKFEELFFIQL-- 234

Query: 241 LLMRK---QFKKEIGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            L+RK   + KK  G+P +  G          +PF  T +Q+  +K+I  D+    +M R
Sbjct: 235 QLIRKNLVRKKKIKGLPFSDVGAYFNDFYNNQLPFELTNAQKRVVKEIRTDVGSNAQMNR 294

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VA++A+  A++ G QA +MAP  ILA QH++ + +      I V ++T
Sbjct: 295 LLQGDVGSGKTIVAVMAILFALDNGFQACLMAPTEILANQHFKGVSELLAPLGIHVALLT 354

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G++ ++ R+  LE +  G+  ++IGTHAL +D++ Y  L L I+DEQHRFGV QR KL  
Sbjct: 355 GSVRKSARKPLLESLEEGELKVLIGTHALLEDNVVYKNLGLAIIDEQHRFGVAQRAKLWH 414

Query: 417 KAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           K T  PHVL+MTATPIPRTL ++  GD+DIS I E P GRK IKTV    +    V + +
Sbjct: 415 KNTLPPHVLVMTATPIPRTLAMSIYGDLDISVIDELPPGRKEIKTVWRSDSHRLGVFKFI 474

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKES 532
           K  + +G++ Y + P I E +  +++ +++ ++S+   F +    ++I+HG+M    K  
Sbjct: 475 KEEILKGRQVYIVYPLINESEVLDYKDLMDGYDSISRSFPAPEFQVSIVHGQMKADAKAY 534

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M+ F  G  ++++ATTVIEVG++V +AS++IIE+AE FGL+QLHQLRGRVGRG E S C
Sbjct: 535 EMERFVKGETQIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGAEQSFC 594

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           IL+    +S+   TRL  +  + DGF IAE DLK R  G+++G +QSG+ +  IA     
Sbjct: 595 ILMSGNKVSQEGKTRLETMVASSDGFEIAEVDLKLRGPGDLMGTQQSGVLQLKIADIVKD 654

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
            +LL+ AR+ A  +L  DP L S+  + I
Sbjct: 655 AALLKKAREVAVTVLKSDPSLDSIENKPI 683


>gi|160943140|ref|ZP_02090377.1| hypothetical protein FAEPRAM212_00625 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445609|gb|EDP22612.1| hypothetical protein FAEPRAM212_00625 [Faecalibacterium prausnitzii
           M21/2]
          Length = 686

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 224/651 (34%), Positives = 338/651 (51%), Gaps = 20/651 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P+   +GVG K +    K+            DLL ++P  +ID      I+E   +  
Sbjct: 12  DTPVRYLKGVGPKTAERFEKL------GIVTLADLLCHYPRRYIDFSKPYSIAEAPADTE 65

Query: 70  VTITGYISQHS--SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             +   +            RR  +I   D    + + +F             G++    G
Sbjct: 66  CVVKAEVFAKPGGRILPGGRRMERITAGDDVASLEITWFNN--PYATQKLQLGQEYYFQG 123

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
            +     R  MV+P      ++ +     EAVY    GL+  +  + I + L    +LP+
Sbjct: 124 IVTGGMLRRQMVNPQ--VRTAEQIQAAPFEAVYPQTEGLTSSVISRCIRQLLPHAELLPD 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +  ++LQK      AEA   IH P      E  + AR RL Y+ELL  Q+ +  MR + 
Sbjct: 182 PLPPEMLQKYRLLPKAEAVRAIHCPATE---EQAAAARRRLIYEELLVLQLGIGRMRNRG 238

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
               G P+           +++PFSPT +Q  A+++IL DM+ +  M R+LQGDVGSGKT
Sbjct: 239 AAATGAPMRRADPS--PFWQSLPFSPTGAQRRAVEEILTDMASETAMNRLLQGDVGSGKT 296

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           LVA  A+ A + AG QA ++AP  ILA QH E + +      + V ++TG M  A RR  
Sbjct: 297 LVAAAAIWACIRAGYQAALLAPTEILAAQHAEGLNRLLAPFGMRVALLTGGMKAAARRTT 356

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  I   +A +++GTHAL  + +++ +L L ++DEQHRFGV+QR  L +KA  PH+L+M+
Sbjct: 357 LAAIRKDEADLVVGTHALMSEGVEFARLGLAVIDEQHRFGVRQRGALAEKAANPHLLVMS 416

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL L   GD+DIS + E P GR P+KT  I   R  ++   L   + +G++ Y 
Sbjct: 417 ATPIPRTLGLLIYGDLDISVLDELPPGRTPVKTRCITGKRRQDLYRFLDSEIDKGRQVYL 476

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP IE+  +    +V   +  + +       + ++HG++   +K +VM+ FK G    L
Sbjct: 477 VCPAIEDVPDGGLNAVKTYYEDIAKTLLPDRRVGLMHGKLKPKEKAAVMEDFKAGRLDAL 536

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVG+DV +AS+++IENAE +GL+ LHQLRGRVGRG   S C L+     S+   
Sbjct: 537 VSTTVIEVGVDVPNASVMVIENAERYGLSALHQLRGRVGRGAAESWCFLV-SDNTSEAVQ 595

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            RL  L +T DGF +A+ DL+ R  G+  G +Q G+P   IA        L
Sbjct: 596 KRLKFLCSTTDGFAVAQYDLETRGPGDFFGSRQHGLPTLQIADLMNDTRTL 646


>gi|291612783|ref|YP_003522940.1| ATP-dependent DNA helicase RecG [Sideroxydans lithotrophicus ES-1]
 gi|291582895|gb|ADE10553.1| ATP-dependent DNA helicase RecG [Sideroxydans lithotrophicus ES-1]
          Length = 673

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 240/659 (36%), Positives = 363/659 (55%), Gaps = 14/659 (2%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           +        +K+            DL+ + P  + D     +I+++       + G I  
Sbjct: 5   IAPATQSKFTKL------GIHTPFDLVLHLPLRYEDETRITRIADLKPGESAQVEGEII- 57

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
           HS    + RR     L D +G + L F        K     G++I   G+ +       M
Sbjct: 58  HSEVMYRPRRSLVCQLQDDSGILYLRFLNFYPSQQKQ-LAVGKRIRALGEPRMGFFGDEM 116

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           VHP              +  VY    GL      K I  AL+ LP L + + + +LQ+  
Sbjct: 117 VHPKCRVAGESVPLKQALTPVYPTTAGLPQATLTKHIHAALNELP-LDDTLPQKILQRLH 175

Query: 199 FPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P  A +  ++H P    D     E   PA  R+ +DELLA Q+++ +  ++  + +   
Sbjct: 176 LPEFAASVRLLHQPPPDIDEDALLERAHPAWMRIKFDELLAQQLSMRVHYRERSRRVAPG 235

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +    ++   +L+++PF+ T +Q+    +I  D+++ + M R+LQGDVGSGKT+VA +A 
Sbjct: 236 LAAHNRLTDALLQDLPFALTGAQKKVWHEISTDLARPHPMQRLLQGDVGSGKTVVAALAA 295

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+E G Q   MAP  ILA+QHY  ++ +     I    ++G++ +  +  A ERIA G
Sbjct: 296 LQAIENGYQVAFMAPTEILAEQHYLKLRDWLVPLGITPVWLSGSLKKKDKTAAAERIAQG 355

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              + IGTHALFQ+S++++KL LVIVDEQH+FGVQQRL L  K   PH L+M+ATPIPRT
Sbjct: 356 DTMLAIGTHALFQNSVEFHKLGLVIVDEQHKFGVQQRLALRGKGAEPHQLMMSATPIPRT 415

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++   D+D+S I E P GR PI T ++   R +EV ER++    EG++AYW+CP I+E
Sbjct: 416 LAMSYYADLDVSVIDELPPGRTPIVTKLVSDARREEVFERVRAACLEGRQAYWVCPLIDE 475

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ +E F +L + F    I + HG++S  +K   M +FK G  +LL+ATTVIEV
Sbjct: 476 SEALQLQTALETFATLTQIFPDLRIGLAHGKLSSTEKAETMAAFKAGELQLLVATTVIEV 535

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++I++AE  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL ++  
Sbjct: 536 GVDVPNASLMVIDHAERMGLAQLHQLRGRVGRGAAESLCVLLFQQPLSELARARLKIIFE 595

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
             DGF IA++DL+ R  GE+LG +QSG+P    A     D LL+ AR  A  +L   P 
Sbjct: 596 NTDGFEIAQQDLRLRGPGELLGARQSGVPMLRFADLAEDDKLLDKARDIADEMLRDFPQ 654


>gi|227550756|ref|ZP_03980805.1| DNA helicase RecG [Enterococcus faecium TX1330]
 gi|257896396|ref|ZP_05676049.1| ATP-dependent DNA helicase RecG [Enterococcus faecium Com12]
 gi|293379481|ref|ZP_06625625.1| ATP-dependent DNA helicase RecG [Enterococcus faecium PC4.1]
 gi|227180074|gb|EEI61046.1| DNA helicase RecG [Enterococcus faecium TX1330]
 gi|257832961|gb|EEV59382.1| ATP-dependent DNA helicase RecG [Enterococcus faecium Com12]
 gi|292642004|gb|EFF60170.1| ATP-dependent DNA helicase RecG [Enterococcus faecium PC4.1]
          Length = 678

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 226/695 (32%), Positives = 376/695 (54%), Gaps = 25/695 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           ++  VT+ G +           K+   +  +        + FF +    LK       +I
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVSFFNQ--PYLKEKVILSEEI 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V GK    +  +  +    I  +    +F     +Y +   +       +I +      
Sbjct: 112 AVYGKWDAKRKALNGMK---ILGSQTMDDFS---PIYHVNKSIRQTTLVDLIKKGFQEYG 165

Query: 184 VL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL- 241
            L  E +  +L++K      A A   +H P   K+ E    A+ R+ ++E    Q+ L  
Sbjct: 166 TLIEENLPNNLVEKYRLLDRASAVRSMHFP---KNHEENHQAKRRVVFEEFFLFQMRLQG 222

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L + +  +  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQGD
Sbjct: 223 LKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQGD 282

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ V ++TG+   
Sbjct: 283 VGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTVALLTGSTKT 342

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR+ LE++  G+ +++IGTHAL QD +++  L LVI DEQHRFGV QR  L +K   P
Sbjct: 343 KERRELLEKLERGEINVVIGTHALLQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWRP 402

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  +  L+ 
Sbjct: 403 DVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKELAR 462

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKN 539
           G + Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK+
Sbjct: 463 GHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFKD 522

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P 
Sbjct: 523 NQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANPK 582

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F IA      ++LE+A
Sbjct: 583 -NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEVA 641

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           R++A  +            Q +   L +   +  +
Sbjct: 642 REEAAALWQIKNWQMLPEYQPLAQSLQIENQDNRY 676


>gi|227893319|ref|ZP_04011124.1| DNA helicase RecG [Lactobacillus ultunensis DSM 16047]
 gi|227864899|gb|EEJ72320.1| DNA helicase RecG [Lactobacillus ultunensis DSM 16047]
          Length = 681

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 219/689 (31%), Positives = 361/689 (52%), Gaps = 22/689 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M     N LFAP++  +GVG K +  L      G+       DLLFY P  + D      
Sbjct: 1   MNKMINNALFAPVTDLKGVGTKTAADL------GSLGIYSIYDLLFYFPFRY-DELQTLP 53

Query: 61  ISEISEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
           + +I + + V + G ++          K+      +      I + FF +    LKN   
Sbjct: 54  LDQIMDGQKVMLKGIVATEPFVSRFGYKKTRLSFKMRIDHDVIMVNFFNQ--PWLKNKIE 111

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G+++ + GK    +  +      + F  +++ N   +  +Y +   +       +I  A
Sbjct: 112 IGQEVAIYGKYNVARESLSA----FKFVAAKE-NDSGMAPIYPVNRHVKQKKLVNLINLA 166

Query: 179 LSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           +   L  + + +   + +K       E    +H P+  ++ E    A+    + E    +
Sbjct: 167 IDNFLDQVQDIVPLQIREKYRLLKDQEIIQKMHRPKNGQEAE---IAKRSAIFREFFIFE 223

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + L L+     K+ G P   + K    +  ++PF  +  Q+  + +I  DM    +M R+
Sbjct: 224 LQLTLLASHDGKQEGYPKKYDLKEIANLTNSLPFELSNDQKRVVNEIFADMHSPGQMRRL 283

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   + V ++TG
Sbjct: 284 LQGDVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTG 343

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           N     RR+    +  G  +++IGTHAL Q ++ + KL LVI+DEQHRFGV QR  L  K
Sbjct: 344 NTKTLERREIYRELTDGTINVVIGTHALIQKNVIFKKLGLVIIDEQHRFGVGQRQALINK 403

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P +L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +     +++ EV   +  
Sbjct: 404 GDRPDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISAWKTSSQMKEVYHLMHE 463

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L +G + Y + P I E +  + ++  E    L   F    + ++HG+M    K+ +M +
Sbjct: 464 QLDQGFQIYAVTPLITESETLDLKNAEELHKKLSHDFPDQKVVLLHGQMPGPKKDEIMTA 523

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F NG   +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG   S C+ + 
Sbjct: 524 FANGEINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGITQSYCVFVA 583

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            P  + +   R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F +     + + L
Sbjct: 584 DPK-TDSGKARMKIIAATNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTL 642

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILL 685
            +A+K A+ ++ +DP+L+    ++++ +L
Sbjct: 643 VVAQKVARSLVKKDPELSDPEHKALKQVL 671


>gi|110596932|ref|ZP_01385222.1| ATP-dependent DNA helicase RecG [Chlorobium ferrooxidans DSM 13031]
 gi|110341619|gb|EAT60079.1| ATP-dependent DNA helicase RecG [Chlorobium ferrooxidans DSM 13031]
          Length = 706

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 238/714 (33%), Positives = 373/714 (52%), Gaps = 36/714 (5%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           A +   +GVG K +  L +I        +   DLL Y P  ++DR     I ++++   V
Sbjct: 5   ASIIYLKGVGSKKASILKEI------GISTVDDLLNYFPRRYLDRSAMKCIRDLADGETV 58

Query: 71  TITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           T+ G + +         R  +K+ L D TG++ L +F R           G  + V GK+
Sbjct: 59  TVVGTVLKTQLEGTHPGRARFKVWLGDATGQLELTWF-RGVRFFSRSIVSGDALAVHGKV 117

Query: 130 KKLKNRIIMVHPHY-------------IFHNSQDVNFPLIEAVYSLP-----TGLSVDLF 171
                +  M HP Y                +    +   I ++Y         GL+    
Sbjct: 118 SYFGRQAQMQHPDYDRLTASPHEPGEGEISDFDLYHTGRIISIYPTTDAMKQAGLTSKQL 177

Query: 172 KKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
           + ++  A     V   E + + +L       + EA++ IH P   +  E     R R+ +
Sbjct: 178 RTLVARAFDEYRVRSEENLSQAILSDYHLLPLREAYHEIHFPSSHEALELA---RYRMKW 234

Query: 231 DELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
            EL   Q+   L + + +           G + +++ R +P+  T +Q+ A+++I +D+ 
Sbjct: 235 SELFYVQLMFALRQSELRTSKRAVIFTHSGVVTEQLYRTLPYELTDAQKQAVREIYRDLK 294

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
             + M R+LQGDVGSGKT+VA+ AMA A + G Q+  MAP  ILA QHY  +K+  Q   
Sbjct: 295 TGSPMNRLLQGDVGSGKTIVAMFAMALAADNGLQSAFMAPTEILAVQHYLSMKRLFQPLG 354

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + V ++TG   +  R+  LE +  G+ HI +GTHAL +  + Y  L LV++DEQHRFGV 
Sbjct: 355 LRVGLLTGKQRKKERQALLEALGSGELHIAVGTHALIEGEVSYAGLGLVVIDEQHRFGVL 414

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR  L +KA  PHVLLMTATPIPRTL +   GD+D+S I + PAGR+P++T +     + 
Sbjct: 415 QRKALREKAVNPHVLLMTATPIPRTLSMGVFGDLDVSVIRQMPAGRRPVRTSLCYEKELA 474

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSD 527
           +V + L+  ++EG++ Y + P +EE ++ + ++ VE F  L         + +IHG+++ 
Sbjct: 475 KVYDFLRSEVAEGRQGYIVYPLVEESEKMDLKAAVESFEELSSSVFPDLRLGLIHGQLTP 534

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             KE VMD F+ G   LL+ TTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRGE
Sbjct: 535 DRKEMVMDEFRRGEVDLLVGTTVIEVGVDVPNATVMVIEHAERFGLAQLHQLRGRVGRGE 594

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLI 646
             S+C L+   P +  +  RL  + +T DGF+I+E D + R  G +LG +QSG +    I
Sbjct: 595 HGSTCFLICSMP-TAEARERLEAMVSTNDGFIISEIDARIRGVGNVLGKEQSGPLNGLRI 653

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A       +++ AR  A  ++ +D  L +     I+   YL  Y +       G
Sbjct: 654 ADLTRDFDIMQSARIAAFRVIAEDAQLRAAEHGVIK-AHYLRYYQDRVTLADIG 706


>gi|283797869|ref|ZP_06347022.1| ATP-dependent DNA helicase RecG [Clostridium sp. M62/1]
 gi|291074560|gb|EFE11924.1| ATP-dependent DNA helicase RecG [Clostridium sp. M62/1]
 gi|295091919|emb|CBK78026.1| ATP-dependent DNA helicase RecG [Clostridium cf. saccharolyticum
           K10]
          Length = 722

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 230/693 (33%), Positives = 371/693 (53%), Gaps = 19/693 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            PL+  +GVG+K +   SK+      N T   +LL Y+P ++        +  +  E   
Sbjct: 42  QPLTAIKGVGEKTARLFSKL------NVTNVEELLHYYPRAYDAFREPQPVKSLVPETTA 95

Query: 71  TITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            + G +++ +   +    +   + L D TG + L ++      L++    G +    GK+
Sbjct: 96  AVEGVLTKTADVVRFSHLQVTMVHLRDETGTVQLNWYN--MPFLRSTLKAGERFVFRGKV 153

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            K + +++M  P              ++ VY    GL      K + +ALS   +  +++
Sbjct: 154 AKKRGKLVMEQPEIYRPAQYSALVHSMQPVYGQTKGLGNKTIAKAVAQALSERELERDYM 213

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            + L +K        A   IH P+   +  ++   R+RL +DE     +++ L++++   
Sbjct: 214 PERLREKYELAEYNFALEHIHFPKDEAELLFS---RKRLVFDEFFMFLLSVRLLKEKKAD 270

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
              + +       Q++  ++P+S TK+QE  +K++  D+S    M R++QGDVGSGKT++
Sbjct: 271 TKSLYVMEPRPEVQRLKDSLPYSLTKAQEKVLKEVYADLSGGQVMNRLVQGDVGSGKTII 330

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRKA 367
           A++A+  A   G Q  +M P  +LA+QH E +++      I     ++TG+M    +R A
Sbjct: 331 AILALLQAAYNGYQGALMVPTEVLARQHLESMEELFAAHGIEKKAILLTGSMTAKEKRMA 390

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            ++I   +A II+GTHAL Q+ + Y KL LVI DEQHRFGV QR  L  K T PHVL+M+
Sbjct: 391 YQKIESHEADIIVGTHALIQEKVIYDKLALVITDEQHRFGVAQREMLGNKGTEPHVLVMS 450

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +   GD+DIS I E PA RKPIK  ++  +        ++   + G++AY 
Sbjct: 451 ATPIPRTLAIIIYGDLDISIIDELPANRKPIKNCVVGTDYRKNAYRFIEREAAAGRQAYV 510

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP +E  +     +VV+    L E+   S+ +  +HG+M   +K  +M+ F  G  ++L
Sbjct: 511 ICPMVEPSEMIEAENVVDYTKKLRENLPESVRVEYLHGKMKPKEKNLLMEQFAEGEIQVL 570

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVGI+V +A++++IENAE FGLAQLHQLRGRVGRG+E S CI + +    +   
Sbjct: 571 VSTTVIEVGINVPNATVMMIENAERFGLAQLHQLRGRVGRGKEQSYCI-MVNASSDEGIQ 629

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL +L  + DGF IA EDLK R  G+I GI+QSG  +F +        LL+   ++ + 
Sbjct: 630 KRLEILNKSNDGFFIASEDLKLRGPGDIFGIRQSGELEFKLGDIFTDADLLKTVSEEVRE 689

Query: 666 ILTQDPDLTSVRGQSI--RILLYLYQYNEAFQF 696
           IL  DPDL+    + +  R+  YL +       
Sbjct: 690 ILDADPDLSGEENRELGKRLGEYLEESYSRLNL 722


>gi|313669001|ref|YP_004049285.1| DNA helicase [Neisseria lactamica ST-640]
 gi|313006463|emb|CBN87926.1| putative DNA helicase [Neisseria lactamica 020-06]
          Length = 680

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 238/666 (35%), Positives = 361/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYAGHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +   G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAAALRGNG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 VLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I + P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDKLPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMTRFSSGELNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|221632119|ref|YP_002521340.1| ATP-dependent DNA helicase RecG [Thermomicrobium roseum DSM 5159]
 gi|221156495|gb|ACM05622.1| ATP-dependent DNA helicase RecG [Thermomicrobium roseum DSM 5159]
          Length = 807

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 237/689 (34%), Positives = 366/689 (53%), Gaps = 28/689 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI----S 65
             P++   GVG + +  L  +        T   DLLF  P  ++D      I  +     
Sbjct: 120 DDPVTVLPGVGSQRARQLEAL------GVTTVRDLLFLVPRRYLDYTQVVPIGRLGRLVR 173

Query: 66  EERIVT--ITGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
               VT  + G + Q  + +    R Y  + L D TG I +++F      +      G++
Sbjct: 174 PGEEVTCSVIGEVVQIETRETSGGRRYVSVQLRDETGTIPVIWFN---PYIARQLEAGQR 230

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-R 181
           I V+G+++     +   +P +    ++ +    I  VY L  GL     +++   AL   
Sbjct: 231 IAVSGRLEGHGPYVRFRNPEWEPAEAELLQAGRIVPVYPLTQGLYQRQVRQLTRAALDLA 290

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP L + +   L ++   PS+A A   +H P      E        LA+DE L  Q+ L+
Sbjct: 291 LPRLEDPLPPALRERNRLPSLAWALEQLHYPETLAAAERARRR---LAFDEFLVLQLGLV 347

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
             R  +  + GI I ++    +  L ++PF  T +Q  A+++IL D+++ + M R+LQGD
Sbjct: 348 QRRLAWHAQAGIAIPIDRAFLETFLASLPFQLTGAQRRALEEILADLAEPHPMSRLLQGD 407

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ----IIVEIITG 357
           VGSGKT+VA  A      AG QA I+AP  ILA+QH+  + +           +V ++TG
Sbjct: 408 VGSGKTVVAAAAALLVHRAGYQAAILAPTEILAEQHFRTLTRLYHGLPGGERPLVALLTG 467

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           + P+  R   L  +A G   II+GTHAL ++ +Q+ +L L ++DEQHRFGV QR  L  K
Sbjct: 468 STPERDRGSILAGLASGTISIIVGTHALLEERVQFRRLALAVIDEQHRFGVLQRHTLRSK 527

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PHVL+MTATPIPR+L L   GD+D+S I E P GR+P+KT ++P  +  +  E ++ 
Sbjct: 528 GENPHVLVMTATPIPRSLALVLHGDLDLSIIDELPPGRQPVKTYVVPGRKRTQAYEFVRR 587

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMD 535
            + +G +A+ ICP +EE +    R+    +  L         + ++HGRMS  +KE VM 
Sbjct: 588 EIEKGHQAFIICPLVEESEAIEARAATAEYERLQREVFPDLRLGLLHGRMSPREKEDVMT 647

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G   +L++T V+EVGID+ +A++I+IE AE FGLAQLHQ RGRVGRG   S C+L+
Sbjct: 648 RFRDGELHILVSTAVVEVGIDIPNATVILIEGAERFGLAQLHQFRGRVGRGSAPSYCLLV 707

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
                ++ +  RL  + +T DGF +AE DL+ R  GE LG +QSG+P    A      S 
Sbjct: 708 SDAS-TETARQRLEAVASTTDGFRLAEIDLELRGPGEFLGTRQSGLPNLRFASLA-DLST 765

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           L+ AR+ A+ +L QDP L +     +  L
Sbjct: 766 LQAARRTAEDLLRQDPLLAAPEHVPLAEL 794


>gi|257866567|ref|ZP_05646220.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC30]
 gi|257872917|ref|ZP_05652570.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC10]
 gi|257800525|gb|EEV29553.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC30]
 gi|257807081|gb|EEV35903.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC10]
          Length = 676

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 222/692 (32%), Positives = 378/692 (54%), Gaps = 25/692 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+  +GVG+K +  L+ +            DLL Y+P  + D   R +++EI ++ 
Sbjct: 2   LNQPLTVLKGVGEKRAQDLASL------GIETIEDLLKYYPFRYEDIQER-QLAEIQDQE 54

Query: 69  IVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            VTI G +           K+   +  +        + FF +    LK+      +I V 
Sbjct: 55  KVTIKGIVVSPPVVNRFGYKKSRLQFRMMQDHDVFNVSFFNQ--PYLKDKVEVSEEIAVY 112

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA-LSRLPVL 185
           GK    +  +  +    I  +    +F     +Y +   +   +  ++I +A L     +
Sbjct: 113 GKWDAKRKGLTGIK---ILGSKSAEDFA---PIYHVNKAVRQSVLIELIKQAFLDFGDQI 166

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMR 244
            E +   L++K        A   +H P   KD + +  A+ R+ ++E    Q+ +  L +
Sbjct: 167 TEILPLSLIEKYRLLDRKSAMFAMHFP---KDPQESHQAKRRVIFEEFFLFQMQIQGLKK 223

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            +  ++ G+ I+ + +  ++  R +PF  T +Q+    +I  D+     M R+LQGDVGS
Sbjct: 224 SEKAEKNGLAIDYDVQRLKEFTRKLPFELTNAQKRVTNEICHDLKSPQHMQRLLQGDVGS 283

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA IA+ A + AG Q  +M P  ILAQQH E + +     ++   ++TG+     R
Sbjct: 284 GKTVVAAIALYATMTAGFQGALMVPTEILAQQHLESLNQLFDPLEVTTALLTGSTKPKER 343

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R  LE++A G+  II+GTHAL Q+ + +  L LVI DEQHRFGV QR  L +K   P VL
Sbjct: 344 RVILEQLAAGEIDIIVGTHALIQEGVDFAHLGLVITDEQHRFGVNQRKVLREKGYLPDVL 403

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            MTATPIPRTL +T+ G++D+S I E PAGR P++T  +   + + ++E  +  L++G +
Sbjct: 404 FMTATPIPRTLAITAYGEMDVSVIDEMPAGRIPVETRWVRPPQFESILEWAQKELAQGHQ 463

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            Y ICP IEE +  + ++  E +  L  +F  T  + ++HG+M + +K+S+M++FK    
Sbjct: 464 MYVICPLIEESEMLDVKNATEIYEQLQSYFSPTYQVGMLHGKMKNQEKDSIMEAFKENQL 523

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P  ++
Sbjct: 524 QILVSTTVIEVGVNVPNATVMLIIDADRFGLAQLHQLRGRVGRGADPSYCILIANPK-NE 582

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F  A       +LE+A+ +
Sbjct: 583 TGVERMKIMTETTNGFVVSEKDLQLRGPGEVFGNRQSGLPEFAAADLVADAHILEVAQVE 642

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           A  +  ++         ++   L   + ++ F
Sbjct: 643 AAQLWQKNGWQLLPEFSALANYLAAKKADKQF 674


>gi|257887985|ref|ZP_05667638.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,141,733]
 gi|257824039|gb|EEV50971.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,141,733]
          Length = 678

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 227/695 (32%), Positives = 377/695 (54%), Gaps = 25/695 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           ++  VT+ G +           K+   +  +        + FF +    LK       +I
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVSFFNQ--PYLKEKVILSEEI 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V GK    +  +  +    I  +    +F     +Y +   +       +I +      
Sbjct: 112 AVYGKWDAKRKALNGMK---ILGSQTMDDFS---PIYHVNKSIRQTTLVDLIKKGFQEYG 165

Query: 184 VL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL- 241
            L  E + K+L++K      A A   +H P   K+ E    A+ R+ ++E    Q+ L  
Sbjct: 166 TLIEENLPKNLVEKYRLLDRASAVRSMHFP---KNHEENHQAKRRVVFEEFFLFQMRLQG 222

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L + +  +  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQGD
Sbjct: 223 LKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQGD 282

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ V ++TG+   
Sbjct: 283 VGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTVALLTGSTKT 342

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR+ LE++  G+ +++IGTHAL QD +++  L LVI DEQHRFGV QR  L +K   P
Sbjct: 343 KERRELLEKLERGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWRP 402

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  +  L+ 
Sbjct: 403 DVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKELAR 462

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKN 539
           G + Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK+
Sbjct: 463 GHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFKD 522

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P 
Sbjct: 523 NQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANPK 582

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F IA      ++LE+A
Sbjct: 583 -NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEVA 641

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           R++A  +            Q +   L +   +  +
Sbjct: 642 REEAAALWQIKNWQMMPEYQPLAQSLQIENQDNRY 676


>gi|170702358|ref|ZP_02893251.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria IOP40-10]
 gi|170132743|gb|EDT01178.1| ATP-dependent DNA helicase RecG [Burkholderia ambifaria IOP40-10]
          Length = 686

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 246/696 (35%), Positives = 375/696 (53%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K    L+K+        TR IDL+ + P  + D      I E+    I    G +   + 
Sbjct: 2   KTVDKLAKL------GLTRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFD-NE 54

Query: 82  FQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + + D  GE + L F       +K +   G+++ V G ++     + MVH
Sbjct: 55  VAYRPRRQLVVKIQDDDGEQLVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGMEMVH 113

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P      +      ++  VY    G+S    +K I  A+ R P LPE +  ++    L+ 
Sbjct: 114 PAVRVVEADAPLPQVLTPVYPSTAGVSQAYLRKAIENAVERTP-LPELLPPEIERDYLKP 172

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P++A+A  I+H+P    D     + + PA  R+ ++ELLA Q++L    ++ +    
Sbjct: 173 LGVPTLAQAVRILHHPGVDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAA 232

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +             ++   +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT
Sbjct: 233 PAMPRRAATDADALTTRLYAALPFTLTGAQARVVDEIAHDLTLAHPMQRLLQGDVGSGKT 292

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A   A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 293 VVAALAATQAIDAGYQAALMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAA 352

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           +E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 353 IEAAALGTAQLVIGTHAIIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARD 412

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+++S I E P GR P+ T ++   R +EVI R++  
Sbjct: 413 FQPHQLMMSATPIPRTLAMTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREA 472

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR+S  DK +VM++F
Sbjct: 473 ALTGRQVYWVCPLIEESETLQLQTAVETYETLATALPELKVGLVHGRLSPADKAAVMEAF 532

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 533 TRNEVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYT 592

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L++
Sbjct: 593 GPLSLTGRERLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLID 652

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   PD+ +      R L    QY +A
Sbjct: 653 PARDAAARLIAAYPDVVTQ--HLARWLGAREQYLKA 686


>gi|72382000|ref|YP_291355.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str.
           NATL2A]
 gi|72001850|gb|AAZ57652.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str.
           NATL2A]
          Length = 846

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 255/688 (37%), Positives = 390/688 (56%), Gaps = 31/688 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + +S+ +GVG K +  LS +            DL+ Y P  ++D      I +    +
Sbjct: 147 LQSTISSVKGVGSKQAERLSTL------GLILIRDLINYFPRDYVDYSSLKTIDKTQAGQ 200

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTE-----MLKNV---F 117
            VTI   + + SSF+  K     IL   + D TG + +  F+          +K+    +
Sbjct: 201 NVTIVAKVRRCSSFKSPKNPNLAILELFIKDKTGGMKITRFFAGRRSSSIAYVKSQQSLY 260

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-----NFPLIEAVYSLPTGLSVDLFK 172
             G  + V+G +K+ K    +  P     +S +          I  VYSL  G++ D F+
Sbjct: 261 PVGATVAVSGLVKESKYGKSLNDPLIEIIDSPNDYLKSRTIGQILPVYSLTEGITADKFR 320

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            +I   L     + + + K+ L +   P+  EAF  IHNP  +      + A+ R+ +DE
Sbjct: 321 DLIQSILYLTSNIKDPLPKETLNRLDLPNRKEAFFHIHNPENSMTL---AKAKRRIVFDE 377

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKI---AQKILRNIPFSPTKSQESAIKDILQDMS 289
            L  Q++LLL R   KK     +++E  I     K L  +PFS T +Q   +K+I  D+ 
Sbjct: 378 FLLLQLSLLLRRDLHKKSDSPQLSIEPNINSLVGKFLSILPFSLTNAQRRVLKEIESDIV 437

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           +   M R+LQGDVGSGKT++A+ A+  AV++G Q   MAP  +LA QH++ + K+    +
Sbjct: 438 KAEPMSRLLQGDVGSGKTVIAISALLTAVQSGWQGAFMAPTEVLASQHFQTLSKWIPQLE 497

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           I V+++TG+ P++ R++ L  + +G   I++GTHALF+D + + +L LV+VDEQHRFGV+
Sbjct: 498 INVDLLTGSTPKSRRKQILTDLVNGSTKILVGTHALFEDPVVFERLGLVVVDEQHRFGVK 557

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR KL  K   PH+L MTATPIPRTL LT  GD+D+S++ E P GR PI T +I  N   
Sbjct: 558 QRNKLLNKGLQPHLLTMTATPIPRTLALTLHGDLDVSQLDELPPGRTPINTQLISPNEKK 617

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSD 527
              + ++  + +G + Y + P IEE ++    S V+    L     S  ++ ++HG+M  
Sbjct: 618 YAYDLIRSEIKKGHQIYVVLPLIEESEKLELSSAVDVHYQLSTEIFSEFNVELLHGKMKS 677

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
           ++K+ V+ +F N    +L++TTVIEVG+DV +AS+++IE+++ FGLAQLHQLRGRVGRG 
Sbjct: 678 VEKQEVIQNFINKKSDILVSTTVIEVGVDVPNASVMLIEDSDRFGLAQLHQLRGRVGRGA 737

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C LL H   +K S  RL VL N+ DGF I+E DL+ R  G++LG KQSG+P F +A
Sbjct: 738 SKSYC-LLSHQNKNKLSRQRLDVLVNSNDGFEISEIDLRFRGPGQVLGTKQSGLPDFALA 796

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTS 675
                  +LEIARK+A+ IL  DP L++
Sbjct: 797 SLADDADVLEIARKEARIILDSDPLLSN 824


>gi|257876171|ref|ZP_05655824.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC20]
 gi|257810337|gb|EEV39157.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC20]
          Length = 676

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 222/692 (32%), Positives = 378/692 (54%), Gaps = 25/692 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+  +GVG+K +  L+ +            DLL Y+P  + D   R +++EI ++ 
Sbjct: 2   LNQPLTVLKGVGEKRAQDLASL------GIETIEDLLKYYPFRYEDIQER-QLAEIQDQE 54

Query: 69  IVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            VTI G +           K+   +  +        + FF +    LK+      +I V 
Sbjct: 55  KVTIKGIVVSPPVVNRFGYKKSRLQFRMMQDHDVFNVSFFNQ--PYLKDKVEVSEEIAVY 112

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA-LSRLPVL 185
           GK    +  +  +    I  +    +F     +Y +   +   +  ++I +A L     +
Sbjct: 113 GKWDAKRKGLTGMK---ILGSKSAEDFA---PIYHVNKAVRQSVLIELIKQAFLDFGDQI 166

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMR 244
            E +   L++K        A   +H P   KD + +  A+ R+ ++E    Q+ +  L +
Sbjct: 167 TEILPLSLIEKYRLLDRKSAMFAMHFP---KDPQESHQAKRRVIFEEFFLFQMQIQGLKK 223

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            +  ++ G+ I+ + +  ++  R +PF  T +Q+    +I  D+     M R+LQGDVGS
Sbjct: 224 SEKAEKNGLAIDYDVQRLKEFTRKLPFELTNAQKRVTNEICHDLKSPQHMQRLLQGDVGS 283

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA IA+ A + AG Q  +M P  ILAQQH E + +     ++   ++TG+     R
Sbjct: 284 GKTVVAAIALYATMTAGFQGALMVPTEILAQQHLESLNQLFDPLEVTTALLTGSTKPKER 343

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R  LE++A G+  II+GTHAL Q+ + +  L LVI DEQHRFGV QR  L +K   P VL
Sbjct: 344 RVILEQLAAGEIDIIVGTHALIQEGVDFAHLGLVITDEQHRFGVNQRKVLREKGYLPDVL 403

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            MTATPIPRTL +T+ G++D+S I E PAGR P++T  +   + + ++E  +  L++G +
Sbjct: 404 FMTATPIPRTLAITAYGEMDVSVIDEMPAGRIPVETRWVRPPQFESILEWAQKELAQGHQ 463

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            Y ICP IEE +  + ++  E +  L  +F  T  + ++HG+M + +K+S+M++FK    
Sbjct: 464 MYVICPLIEESEMLDVKNATEIYEQLQSYFSPTYQVGMLHGKMKNQEKDSIMEAFKENQL 523

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P  ++
Sbjct: 524 QILVSTTVIEVGVNVPNATVMLIIDADRFGLAQLHQLRGRVGRGADASYCILIANPK-NE 582

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F  A       +LE+A+ +
Sbjct: 583 TGVERMKIMTETTNGFVVSEKDLQLRGPGEVFGNRQSGLPEFAAADLVADAHILEVAQVE 642

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           A  +  ++         ++   L   + ++ F
Sbjct: 643 AAQLWQKNGWQLLPEFSALANYLAAKKADKQF 674


>gi|261207034|ref|ZP_05921723.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TC 6]
 gi|289565332|ref|ZP_06445782.1| ATP-dependent DNA helicase RecG [Enterococcus faecium D344SRF]
 gi|294615352|ref|ZP_06695225.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1636]
 gi|260078662|gb|EEW66364.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TC 6]
 gi|289162822|gb|EFD10672.1| ATP-dependent DNA helicase RecG [Enterococcus faecium D344SRF]
 gi|291591726|gb|EFF23362.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1636]
          Length = 678

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 226/695 (32%), Positives = 376/695 (54%), Gaps = 25/695 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           ++  VT+ G +           K+   +  +        + FF +    LK       +I
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVSFFNQ--PYLKEKVILSEEI 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V GK    +  +  +    I  +    +F     +Y +   +       +I +      
Sbjct: 112 AVYGKWDAKRKALNGMK---ILGSQTMDDFS---PIYHVNKSIRQTTLVDLIKKGFQEYG 165

Query: 184 VL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL- 241
            L  E +  +L++K      A A   +H P   KD E    A+ R+ ++E    Q+ L  
Sbjct: 166 TLIEENLPNNLVEKYRLLDRASAVRSMHFP---KDHEENHQAKRRVVFEEFFLFQMRLQG 222

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L + +  +  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQGD
Sbjct: 223 LKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQGD 282

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ + ++TG+   
Sbjct: 283 VGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTIALLTGSTKA 342

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR+ LE++  G+ +++IGTHAL QD +++  L LVI DEQHRFGV QR  L +K   P
Sbjct: 343 KERRELLEKLGQGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWRP 402

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  K  L+ 
Sbjct: 403 DVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTKKELAR 462

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKN 539
           G + Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK+
Sbjct: 463 GHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFKD 522

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P 
Sbjct: 523 NQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANPK 582

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F +A      ++LE+A
Sbjct: 583 -NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAVADLVTDGNVLEVA 641

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           R++A  +            Q +   L +   +  +
Sbjct: 642 REEAAALWQIKDWQMLPEYQPLAQSLQIENQDNRY 676


>gi|161869430|ref|YP_001598597.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis 053442]
 gi|161594983|gb|ABX72643.1| DNA helicase [Neisseria meningitidis 053442]
          Length = 680

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 238/666 (35%), Positives = 361/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAALGGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE  R+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQVREIAPMLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|260558329|ref|ZP_05830525.1| ATP-dependent DNA helicase RecG [Enterococcus faecium C68]
 gi|293567889|ref|ZP_06679230.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1071]
 gi|260075503|gb|EEW63809.1| ATP-dependent DNA helicase RecG [Enterococcus faecium C68]
 gi|291589474|gb|EFF21281.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1071]
          Length = 678

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 227/695 (32%), Positives = 376/695 (54%), Gaps = 25/695 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           ++  VT+ G +           K+   +  +        + FF +    LK       +I
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVSFFNQ--PYLKEKVILSEEI 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V GK    +  +  +    I  +    +F     +Y +   +       +I +      
Sbjct: 112 AVYGKWDAKRKALNGMK---ILGSQTMDDFS---PIYHVNKSIRQTTLVDLIKKGFQEYG 165

Query: 184 VL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL- 241
            L  E +  +L++K      A A   +H P   KD E    A+ R+ ++E    Q+ L  
Sbjct: 166 TLIEENLPNNLVEKYRLLDRASAVRSMHFP---KDHEENHQAKRRVVFEEFFLFQMRLQG 222

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L + +  +  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQGD
Sbjct: 223 LKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQGD 282

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ + ++TG+   
Sbjct: 283 VGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTIALLTGSTKA 342

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR+ LE++  G+ +++IGTHAL QD +++  L LVI DEQHRFGV QR  L +K   P
Sbjct: 343 KERRELLEKLGQGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWRP 402

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  K  L+ 
Sbjct: 403 DVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTKKELAR 462

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKN 539
           G + Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK+
Sbjct: 463 GHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFKD 522

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P 
Sbjct: 523 NQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANPK 582

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F IA      ++LE+A
Sbjct: 583 -NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEVA 641

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           R++A  +            Q +   L +   +  +
Sbjct: 642 REEAAALWQIKDWQMLPEYQPLAQSLQIENQDNRY 676


>gi|195977526|ref|YP_002122770.1| ATP-dependent DNA helicase RecG [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974231|gb|ACG61757.1| ATP-dependent DNA helicase RecG [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 671

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 235/689 (34%), Positives = 373/689 (54%), Gaps = 25/689 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + ++  +G+G K +    K+         +  DLL Y+P  + D   +  + E+ +  
Sbjct: 3   LKSSIANLKGLGPKSAEKFQKL------GIYQIKDLLLYYPFRYEDFKSKSAL-ELLDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              +TG +    S Q    +  ++      GE+ +   +     L +     +++ + G+
Sbjct: 56  KAVLTGRVVTPPSVQYYGFKRNRLSFKLKQGELVISVSFFNQPYLLDKIVLDQEVAIFGR 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPVLP 186
             + K  +  +       +        ++ VY +  G+S     K I  A     L  L 
Sbjct: 116 WDQRKAALTGMKLLMTLEDD-------LQPVYHVAQGISQPALIKAIRSAFDSGALAQLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + L+QK        A   +H P+  +D+     A  R+ ++E    Q+ L +++  
Sbjct: 169 ENLPEPLIQKYRLLPRQAAVYAMHFPKHMEDY---KQALRRIKFEEFFYFQMNLQVLKLA 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K +  G+ I    +   K +  +PFS T++Q+ ++++IL DM+    M R+LQGDVGSG
Sbjct: 226 NKAEGNGLAIPFHQQAVAKKIAALPFSLTRAQQRSLEEILADMTSGAHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT++A +AM AA  AG Q+ +M P  ILA+QHY+ + +      + + ++T  M  A +R
Sbjct: 286 KTVIASLAMYAAQTAGFQSALMVPTEILAEQHYDSLCQLF--PDLSIALLTSGMKVAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
            AL  IA G   +I+GTHAL QD++ Y+KL LVI DEQHRFGV QR    +K   P VL+
Sbjct: 344 TALSAIADGSVDMIVGTHALIQDTVTYHKLGLVITDEQHRFGVNQRRLFREKGNNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++D V+  +K  L++G +A
Sbjct: 404 MTATPIPRTLAITAYGEMDVSIIDELPAGRKPIITRWVKHQQLDSVLAWVKTELAKGAQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ V     L ++F   +SIA++HG+M   DKE +M  FK     
Sbjct: 464 YVISPLIEESETLDLKNAVALEAELKDYFKASASIALMHGKMKADDKEMIMQRFKAKEID 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+I++I NA+ FGL+QLHQLRGRVGRG + S  IL+  P  + +
Sbjct: 524 VLVSTTVIEVGVNVPNATIMLIMNADRFGLSQLHQLRGRVGRGSKQSYAILVADPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R++++  T DGF++AE DLK R  GEI G +QSG+P+F  A       +LE AR+ A
Sbjct: 583 GKERMTIMTTTNDGFVLAEADLKLRGSGEIFGTRQSGLPEFKTADIVEDYHILEEARRVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNE 692
             I+         R   I   L +    +
Sbjct: 643 TEIVAAKNWQLDPRWAPILANLRVADQFD 671


>gi|225869162|ref|YP_002745110.1| ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702438|emb|CAX00322.1| ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 671

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 234/689 (33%), Positives = 372/689 (53%), Gaps = 25/689 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + ++  +G+G K +    K+         +  DLL Y+P  + D   +  + E+ +  
Sbjct: 3   LKSSIANLKGLGPKSAEKFQKL------GIYQIKDLLLYYPFRYEDFKSKSAL-ELLDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              +TG +    S Q    +  ++      GE+ +   +     L       +++ + G+
Sbjct: 56  KAVLTGRVVTPPSVQYYGFKRNRLSFKLKQGELVISVSFFNQPYLLEKIVLDQEVAIFGR 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPVLP 186
             + K  +  +       +        ++ VY +  G+S     K I  A     L  L 
Sbjct: 116 WDQKKAALTGMKLLMTLEDD-------LQPVYHVAQGISQPTLIKAIRSAFDSGALAQLE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + L+QK        A   +H P+  +D+     A  R+ ++E    Q+ L +++  
Sbjct: 169 ENLPEPLIQKYRLLPRQAAVYAMHFPKHMEDY---KQALRRIKFEEFFYFQMNLQVLKLA 225

Query: 247 FK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K +  G+ I    +   K +  +PFS T++Q+ ++++IL DM+    M R+LQGDVGSG
Sbjct: 226 NKAEGNGLAIPFHQQAVAKKIAALPFSLTRAQQRSLEEILADMASAAHMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT++A +AM AA  AG Q+ +M P  ILA+QHY+ + +      + + ++T  M  A +R
Sbjct: 286 KTVIASLAMYAAQTAGFQSALMVPTEILAEQHYDSLCQLF--PDLSIALLTSGMKVAEKR 343

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
            AL  IA G   +I+GTHAL QD++ Y+KL LVI DEQHRFGV QR    +K   P VL+
Sbjct: 344 TALSAIADGSVDMIVGTHALIQDTVTYHKLGLVITDEQHRFGVNQRRLFREKGNNPDVLM 403

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++D V+  +K  L++G +A
Sbjct: 404 MTATPIPRTLAITAYGEMDVSIIDELPAGRKPIITRWVKHQQLDSVLAWVKTELAKGAQA 463

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y I P IEE +  + ++ V     L ++F   +S+A++HG+M   DKE +M  FK     
Sbjct: 464 YVISPLIEESETLDLKNAVALEAELKDYFKASASVALMHGKMKADDKEMIMQRFKAKEID 523

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A+I++I NA+ FGL+QLHQLRGRVGRG + S  IL+  P  + +
Sbjct: 524 VLVSTTVIEVGVNVPNATIMLIMNADRFGLSQLHQLRGRVGRGSKQSYAILVADPK-TDS 582

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R++++  T DGF++AE DLK R  GEI G +QSG+P+F  A       +LE AR+ A
Sbjct: 583 GKERMTIMTTTNDGFVLAEADLKLRGSGEIFGTRQSGLPEFKTADIVEDYHILEEARRVA 642

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNE 692
             I+         R   I   L +    +
Sbjct: 643 AEIVAAKDWQLDPRWAPILANLRVADQFD 671


>gi|116626790|ref|YP_828946.1| ATP-dependent DNA helicase RecG [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229952|gb|ABJ88661.1| ATP-dependent DNA helicase RecG [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 699

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 233/710 (32%), Positives = 372/710 (52%), Gaps = 31/710 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   L+  +G+G   +  L           T   DLL Y P  + DR     + +++   
Sbjct: 3   LTTSLTYVKGIGPARAAMLE------AKGLTTVEDLLGYVPFRYEDRSNMKPVGQLAPGE 56

Query: 69  IVTITGYISQHSSFQLQKRR--PYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITV 125
           + T+   +        ++R    ++    D +  I +  +F+     L NVF EG K+ +
Sbjct: 57  MATVIAEVRSVKMSGFKRRSLGMFEARFTDASRAILVGKWFHGG--YLANVFAEGMKVAL 114

Query: 126 TGKIKK--LKNRIIMVHPHYIFHNSQD------VNFPLIEAVYSLPTGLSVDLFKKIIVE 177
            GK++       + M+HP +   +  D      ++   +  +Y     L+  +F+ +I  
Sbjct: 115 FGKVEFDSYAGELTMLHPEFEILSGDDDEGEAALHVGRVVPIYEGAGKLTTKIFRTLIHR 174

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE----RLAYDEL 233
            L  +  L + + + L  +   P    A   IH P    D    +  R     RL ++E 
Sbjct: 175 ILGTIEPLDDALPQFLKDRLKMPDRWRAVQDIHFPPPDSDLRLLNAFRSPAQFRLIFEEF 234

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
              +  + L R + +   GI   +  ++ ++I   +PF PT +Q+  +K+I  DM+  + 
Sbjct: 235 FWLECGVALKRSKARMMPGIAFELNERVREQIKAMLPFKPTGAQKRVLKEIAGDMAAAHP 294

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA  A   A+E G Q  ++AP  ILA QH    K+  +       
Sbjct: 295 MNRLLQGDVGSGKTIVAAEAAVIAIENGYQVAVLAPTEILAAQHSFTFKRIFEKLGYPTM 354

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+     + +  + +A G   + IGTHAL Q+ +++ KL L I+DEQHRFGV QRL 
Sbjct: 355 LLTGSFSAREKSQMKKLLAEGLVKVAIGTHALIQEDVEFKKLGLAIIDEQHRFGVLQRLG 414

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L +K   P +L+MTATPIPRTL +T  GD+D+S I E P GRKPI T     +RI++V+ 
Sbjct: 415 LAKKGATPDILVMTATPIPRTLAMTLYGDLDVSIIDEMPPGRKPIVTKHSTSDRIEQVLS 474

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKE 531
            +K  + EG++AY + P IEE +    ++  + +  L +      ++ ++HGR+   +KE
Sbjct: 475 FVKKQIDEGRQAYVVYPVIEESETQAMKAAQKEYEHLSKEVFPDIAVGLMHGRLGADEKE 534

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           +VM  FK+G  K+L++TTVIEVG+DV +AS++++E AE FGL+QLHQLRGRVGRG E S 
Sbjct: 535 AVMQRFKDGLIKILVSTTVIEVGVDVPNASVMVVEQAERFGLSQLHQLRGRVGRGAEQSY 594

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           CIL+    ++  +  R+  L  + DGF I+E DLK R  GE  G KQSG+P   +A    
Sbjct: 595 CILVT-EKMNDTARERIRTLVESTDGFYISEMDLKLRGPGEFFGTKQSGLPSLRVANILR 653

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL-YQYNEAFQFIRAG 700
              +LEIAR++A   + + P    +R    R + Y+   +   +  +  G
Sbjct: 654 DAEILEIARREAIDFIARPPSEEDLR----RAVAYIRDHWQRRYGLVTVG 699


>gi|258544403|ref|ZP_05704637.1| ATP-dependent DNA helicase RecG [Cardiobacterium hominis ATCC
           15826]
 gi|258520362|gb|EEV89221.1| ATP-dependent DNA helicase RecG [Cardiobacterium hominis ATCC
           15826]
          Length = 686

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 241/676 (35%), Positives = 362/676 (53%), Gaps = 21/676 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL  PLS     G K +  L++             DLL + P  + DR +   I+ + + 
Sbjct: 2   PLNQPLSAISSHGDKTAELLAR------CGVETLRDLLTHLPLRYEDRSHITPIAALRDG 55

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVT 126
             V I G +      Q +++R   + L D  G+   L++F       K  F  GR+    
Sbjct: 56  ATVQIHGEVLHADLIQ-RRKRMLHVTLRDAAGDYCKLVYFNFYPSQQK-AFAPGRRGLFY 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           GK         + HP   +    +       +  VY    GL    +  +I  AL+    
Sbjct: 114 GKAVWTMQGYQIHHPEVQWLADGETPHLSAQLHPVYPTVKGLGQTRWHDLIRRALAH--A 171

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPR----KAKDFEWTSPARERLAYDELLAGQIAL 240
           LP+    D L    +  +  A   +H P          E   PAR RL  +EL+A Q+++
Sbjct: 172 LPQLPADDPLTAMGYCPLPAALTTLHQPDESTAPDALLERNHPARRRLIIEELIAHQLSI 231

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
              R++ +++    +  E  + ++    +P++ T +Q     +I  D++Q   MLR++QG
Sbjct: 232 QNARQRLREQRATALPAEPPLLREFRAALPYTLTAAQSRVCAEIAADLAQATPMLRLVQG 291

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL A   A+ AG QAV M P  +LA+QH   I++      + V ++T  MP
Sbjct: 292 DVGSGKTVVALSACLQAIAAGQQAVFMVPTELLAEQHAANIRRLLGALPVRVAVLTSKMP 351

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL---TQK 417
            A +R  L+ IA G A +IIGTHA+FQ+ ++Y +L LV++DEQHRFGV QRL+L   T  
Sbjct: 352 AADKRACLQAIADGSADLIIGTHAVFQEQVRYARLALVVIDEQHRFGVHQRLQLQDKTAP 411

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
             + H L++TATPIPRTL ++  G++D S I   PAGR+PI+T ++   + D VI R+  
Sbjct: 412 GVSVHQLVLTATPIPRTLAMSHYGELDCSIIDALPAGRQPIQTSVVSNQKRDAVIARVGE 471

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
               G++AYW+CP IEE       +       L        +A++HGRM++  +++ M +
Sbjct: 472 NCRAGRQAYWVCPLIEESDTLECENAEATAAQLQMMLPDIRVALLHGRMNNDQRQATMSA 531

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G  +LL+ATTVIEVG+DV +A+++IIENAE FGLAQLHQLRGRVGRG   S C+L+Y
Sbjct: 532 FVAGEAQLLVATTVIEVGVDVANATLMIIENAERFGLAQLHQLRGRVGRGSAQSYCLLMY 591

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            PPL + +  RL +++ T DGF IAEEDL  R  GE+LG +Q+G   F +A+      LL
Sbjct: 592 QPPLGETAQRRLRIMRETTDGFRIAEEDLAIRGAGELLGTRQTGEASFRVARLPRDGDLL 651

Query: 657 EIARKDAKHILTQDPD 672
               +  + +  + PD
Sbjct: 652 AETERLTRTLRAEHPD 667


>gi|257885669|ref|ZP_05665322.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,501]
 gi|294618523|ref|ZP_06698085.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1679]
 gi|257821525|gb|EEV48655.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,501]
 gi|291595223|gb|EFF26554.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1679]
          Length = 678

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 228/695 (32%), Positives = 376/695 (54%), Gaps = 25/695 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           ++  VT+ G +           K+   +  +        + FF +    LK       +I
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVSFFNQ--PYLKEKVILSEEI 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V GK    +  +  +    I  +    +F     +Y +   +       +I +      
Sbjct: 112 AVYGKWDAKRKALNGMK---ILGSQTMDDFS---PIYHVNKSIRQTTLVDLIKKGFQEYG 165

Query: 184 VL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL- 241
            L  E +  +L++K      A A   +H P   KD E    A+ R+ ++E    Q+ L  
Sbjct: 166 TLIEENLPNNLVEKYRLLDRASAVRSMHFP---KDHEENHQAKRRVVFEEFFLFQMRLQG 222

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L + +  +  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQGD
Sbjct: 223 LKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQGD 282

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ + ++TG+   
Sbjct: 283 VGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTIALLTGSTKA 342

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR+ LE++  G+ +I+IGTHAL QD +++  L LVI DEQHRFGV QR  L +K   P
Sbjct: 343 KERRELLEKLEQGEINIVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWRP 402

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  K  L+ 
Sbjct: 403 DVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTKKELAR 462

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKN 539
           G + Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK+
Sbjct: 463 GHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFKD 522

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P 
Sbjct: 523 NQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANPK 582

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F IA      ++LE+A
Sbjct: 583 -NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEVA 641

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           R++A  +            Q +   L +   +  +
Sbjct: 642 REEAAALWQIKDWQMLPEYQPLAQSLQIENQDNRY 676


>gi|222097300|ref|YP_002531357.1| ATP-dependent DNA helicase recg [Bacillus cereus Q1]
 gi|221241358|gb|ACM14068.1| ATP-dependent DNA helicase RecG [Bacillus cereus Q1]
          Length = 657

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 221/656 (33%), Positives = 359/656 (54%), Gaps = 17/656 (2%)

Query: 37  NETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLND 96
                  LL + P  + D      ++E+  +  VT+ G +      Q   ++  ++ +  
Sbjct: 2   GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVTVEGKVHSAPLLQYYGKKKSRLTVRV 60

Query: 97  GTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP 154
             G   IT + F R     K        +T+TGK  + +  I +       H    V   
Sbjct: 61  LVGRYLITAVCFNR--PYYKQKLNLDETVTITGKWDQHRQTIAVS----ELHFGPVVRQQ 114

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
            +E VYS+   L+V   ++ I +AL      + E +   LL +       EA   +H P 
Sbjct: 115 EVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEVLPDGLLSRYKLLPRYEALRALHFPS 174

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             +D      AR R  Y+E    Q+ +  L + + +   G    +  +  Q+ +  +PF 
Sbjct: 175 GQEDL---KQARRRFVYEEFFLFQLKMQTLRKMERENSKGTKKEIPSEELQEFIDALPFP 231

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T +Q   + +I++DM+   RM R+LQGDVGSGKT+VA I + AA  A  Q  +M P  I
Sbjct: 232 LTGAQSRVVDEIMKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMVPTEI 291

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QHY+ + +      + VE++T ++    RR+ L ++  G+  I++GTHAL QD + +
Sbjct: 292 LAEQHYQSLAETFSRFGMKVELLTSSVKGVRRREILAKLEQGEIDILVGTHALIQDEVIF 351

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           ++L LVI DEQHRFGV QR  L +K  +P VL MTATPIPRTL +T+ G++D+S I E P
Sbjct: 352 HRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMP 411

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           AGRK I+T     + +D V+  ++  + +G++AY ICP IEE ++ + ++ ++  + L  
Sbjct: 412 AGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTH 471

Query: 513 HFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           H+     + ++HGR+S  +KE +M  F     ++L++TTV+EVG++V +A++++I +AE 
Sbjct: 472 HYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAER 531

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FGL+QLHQLRGRVGRG E S C+L+  P  S+    R+ ++  T DGF+++E+DL+ R  
Sbjct: 532 FGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGP 590

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
           G+  G KQSG+P+F +A        LE AR+DA  ++  +    + +  S+R  L 
Sbjct: 591 GDFFGSKQSGLPEFKVADMVHDYRALETARQDAALLVDSEAFWHNDQYASLRTYLD 646


>gi|328950394|ref|YP_004367729.1| ATP-dependent DNA helicase RecG [Marinithermus hydrothermalis DSM
           14884]
 gi|328450718|gb|AEB11619.1| ATP-dependent DNA helicase RecG [Marinithermus hydrothermalis DSM
           14884]
          Length = 775

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 228/696 (32%), Positives = 368/696 (52%), Gaps = 23/696 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+ T   +G      L+ +            DLL Y+P  + DR   P    +S+  
Sbjct: 97  LETPVETLP-LGPGGKKKLAAL------GVRTVRDLLHYYPRRYEDRRALPGFRLLSDGE 149

Query: 69  IVTITGYISQHSSFQLQKRRP--YKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITV 125
            VT+TG + +    +  K+     + +L D  G ++T ++F +    +     EG +I  
Sbjct: 150 KVTVTGRVLRKELVRTPKKGMQLVQAVLEDRWGWKLTAVWFNQ--PWVMKQLKEGARIIA 207

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           TG++++      +   ++     + ++   I  VY    G+S    ++ +  AL  LP  
Sbjct: 208 TGRVQRRGRYTTLAVEYFEDEEGESLSTGRITPVYPSKEGVSQAFLRRSVWRALEALPQP 267

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           P+ + +     +    +  A   +H P      E       RL +DE L  ++ ++L   
Sbjct: 268 PDPLPEAYRAPRDLVDLPYALRQVHFPDDEAALERA---LARLRFDEYLFLELRVMLQ-S 323

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
                +G    V     +    ++PF  T +QE AI++I  DM+   +M R+LQGDVGSG
Sbjct: 324 GESALVGRVFEVREADLRAFRESLPFPLTGAQERAIREITADMASDRQMARLLQGDVGSG 383

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  A+  A   G Q+ +MAP  ILA+QH++ + +Y     + VE++ G M  A +R
Sbjct: 384 KTVVAAAALFVAARNGAQSALMAPTEILAKQHFQNLSRYLWPLGVRVELLVGAMSAAEKR 443

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + L R+  G+  +++GTHAL Q+ +++  L L ++DE+HRFGV QR  L +    P VL+
Sbjct: 444 EVLRRVREGEVDVVVGTHALIQEDVEFKDLGLAVIDEEHRFGVLQRRALLKGR--PDVLV 501

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPR+L LT  GD+++S + E P GRKP++T ++P     +     +  + +G + 
Sbjct: 502 MSATPIPRSLALTLYGDLEVSVLDEMPPGRKPVRTKLLPAKLRHQAYAFARQEVQKGHQV 561

Query: 486 YWICPQIEEKKES-NFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           + + P IEE +     ++     + L        I I+HGRMS  +K++VM+ F+     
Sbjct: 562 FVVTPTIEESEAMAELQAATRLADELRALLPDVRIEILHGRMSAAEKDAVMERFRRQEFD 621

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LL++TTVIEVG+D+ +A++++IENAE FGLAQLHQLRGRVGRG+  + CIL+     SK 
Sbjct: 622 LLVSTTVIEVGVDIPNATLMVIENAERFGLAQLHQLRGRVGRGDREAYCILIAGDT-SKR 680

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL V++ + DGF IAE+DL+ R  GE+ G +QSG+P   +        L+E AR  A
Sbjct: 681 TMKRLKVIEESTDGFYIAEKDLELRGPGELRGTRQSGLPDLKLGDLTKDTELIEAARALA 740

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           K IL +DP L +    +++  L L    EA  F   
Sbjct: 741 KEILERDPYLNAPEHAALKRELQL--RAEAIGFREV 774


>gi|69249786|ref|ZP_00605048.1| ATP-dependent DNA helicase RecG [Enterococcus faecium DO]
 gi|257878761|ref|ZP_05658414.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,230,933]
 gi|257881402|ref|ZP_05661055.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,502]
 gi|257890619|ref|ZP_05670272.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,410]
 gi|258615172|ref|ZP_05712942.1| ATP-dependent DNA helicase RecG [Enterococcus faecium DO]
 gi|293562982|ref|ZP_06677449.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1162]
 gi|294622007|ref|ZP_06701151.1| ATP-dependent DNA helicase RecG [Enterococcus faecium U0317]
 gi|314937645|ref|ZP_07844971.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133a04]
 gi|314942856|ref|ZP_07849669.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133C]
 gi|314948008|ref|ZP_07851412.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0082]
 gi|314950926|ref|ZP_07853995.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133A]
 gi|314991426|ref|ZP_07856903.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133B]
 gi|314995053|ref|ZP_07860173.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133a01]
 gi|68194075|gb|EAN08620.1| ATP-dependent DNA helicase RecG [Enterococcus faecium DO]
 gi|257812989|gb|EEV41747.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,230,933]
 gi|257817060|gb|EEV44388.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,502]
 gi|257826979|gb|EEV53605.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,410]
 gi|291598434|gb|EFF29507.1| ATP-dependent DNA helicase RecG [Enterococcus faecium U0317]
 gi|291605108|gb|EFF34575.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1162]
 gi|313590779|gb|EFR69624.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133a01]
 gi|313593906|gb|EFR72751.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133B]
 gi|313596935|gb|EFR75780.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133A]
 gi|313598328|gb|EFR77173.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133C]
 gi|313643022|gb|EFS07602.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133a04]
 gi|313645606|gb|EFS10186.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0082]
          Length = 678

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 228/695 (32%), Positives = 376/695 (54%), Gaps = 25/695 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           ++  VT+ G +           K+   +  +        + FF +    LK       +I
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVSFFNQ--PYLKEKVILSEEI 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V GK    +  +  +    I  +    +F     +Y +   +       +I +      
Sbjct: 112 AVYGKWDAKRKALNGMK---ILGSQTMDDFS---PIYHVNKSIRQTTLVDLIKKGFQEYG 165

Query: 184 VL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL- 241
            L  E +  +L++K      A A   +H P   KD E    A+ R+ ++E    Q+ L  
Sbjct: 166 TLIEENLPNNLVEKYRLLDRASAVRSMHFP---KDHEENHQAKRRVVFEEFFLFQMRLQG 222

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L + +  +  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQGD
Sbjct: 223 LKKAEKAETNGLEILYDVQKLKQFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQGD 282

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ + +ITG+   
Sbjct: 283 VGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTIALITGSTKA 342

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR+ LE++  G+ +++IGTHAL QD +++  L LVI DEQHRFGV QR  L +K   P
Sbjct: 343 KERRELLEKLEQGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWRP 402

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  K  L+ 
Sbjct: 403 DVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTKKELAR 462

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKN 539
           G + Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK+
Sbjct: 463 GHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFKD 522

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P 
Sbjct: 523 NQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANPK 582

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F IA      ++LE+A
Sbjct: 583 -NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEVA 641

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           R++A  +            Q +   L +   +  +
Sbjct: 642 REEAAALWQIKDWQMLPEYQPLAQSLQIENQDNRY 676


>gi|325127600|gb|EGC50520.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis N1568]
          Length = 680

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 239/666 (35%), Positives = 361/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAALGGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA +    A+E
Sbjct: 248 TLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALFALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPLLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|256843386|ref|ZP_05548874.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 125-2-CHN]
 gi|256614806|gb|EEU20007.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 125-2-CHN]
          Length = 678

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 216/683 (31%), Positives = 367/683 (53%), Gaps = 22/683 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +  L      G+       DLLFY P  + D      + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTTAAL------GSLGIYSIYDLLFYFPFRY-DELQTLPLDQIMD 56

Query: 67  ERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            + V + G ++  +       K+      +      I + FF +    LKN    G+++ 
Sbjct: 57  GQKVMLKGIVATEAFVSRFGYKKTRLSFKMRIDHDVIMVNFFNQ--PWLKNKIDIGQEVA 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-P 183
           + GK    +  +      + F  +++ N   +  +Y +   +       +I  A+     
Sbjct: 115 IYGKYNVARQSLTA----FKFVAAKE-NDSGMAPIYPVNRHVKQKKLVDLINVAIDDFID 169

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + + + L Q+            +H+P+ + + E     +    + E    ++ L L+
Sbjct: 170 QVQDIVPEKLRQEYRLLKDQVIIEKMHHPKNSHEAELA---KRSAIFREFFIFELQLALL 226

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            +   K++G     +     ++ +++PF  +  Q+  + +I  DM   ++M R+LQGDVG
Sbjct: 227 TRNDGKQMGYAKKYDLTEIAQLTKSLPFELSDDQKHVVNEIFADMHSDSQMRRLLQGDVG 286

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   + V ++TGN     
Sbjct: 287 SGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKTLE 346

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+    +  G  +++IGTHAL QDS+ + KL LVI+DEQHRFGV QR  L  K   P +
Sbjct: 347 RREIYRELTDGTINVVIGTHALIQDSVIFKKLGLVIIDEQHRFGVGQRQALINKGDQPDI 406

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL LT  GD+ +S+I   PAGRK I +     +++ EV  +++  L++G 
Sbjct: 407 LAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKSIISTWKTSSQMKEVYRQMQEQLNQGF 466

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I E +  + ++  E    L   F +  + ++HG+M    K+ +M +F  G  
Sbjct: 467 QIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFAAGEI 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ L  P  + 
Sbjct: 527 DILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-TD 585

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +   R+ ++ +T DGF +AEEDLK R EG++ G  QSG+P+F +     + + L +A+K+
Sbjct: 586 SGKARMKIIASTNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVAQKE 645

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
           A+ ++  DPDL     ++++ +L
Sbjct: 646 ARALVAADPDLLDPGHKALKQVL 668


>gi|293556809|ref|ZP_06675370.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1039]
 gi|291600893|gb|EFF31184.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1039]
          Length = 678

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 227/695 (32%), Positives = 376/695 (54%), Gaps = 25/695 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           ++  VT+ G +           K+   +  +        + FF +    LK       +I
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVSFFNQ--PYLKEKVILSEEI 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V GK    +  +  +    I  +    +F     +Y +   +       +I +      
Sbjct: 112 AVYGKWDAKRKALNGMK---ILGSQTMDDFS---PIYHVNKSIRQTTLVDLIKKGFQEYG 165

Query: 184 VL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL- 241
            L  E +  +L++K      A A   +H P   KD E    A+ R+ ++E    Q+ L  
Sbjct: 166 TLIEENLPNNLVEKYRLLDRASAVRSMHFP---KDHEENHQAKRRVVFEEFFLFQMRLQG 222

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L + +  +  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQGD
Sbjct: 223 LKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQGD 282

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ + ++TG+   
Sbjct: 283 VGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTIALLTGSTKA 342

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR+ LE++  G+ +++IGTHAL QD +++  L LVI DEQHRFGV QR  L +K   P
Sbjct: 343 KERRELLEKLEQGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWRP 402

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  K  L+ 
Sbjct: 403 DVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTKKELAR 462

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKN 539
           G + Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK+
Sbjct: 463 GHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFKD 522

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P 
Sbjct: 523 NQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANPK 582

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F IA      ++LE+A
Sbjct: 583 -NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEVA 641

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           R++A  +            Q +   L +   +  +
Sbjct: 642 REEAAALWQIKDWQMLPEYQPLAQSLQIENQDNRY 676


>gi|325141701|gb|EGC64160.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis 961-5945]
 gi|325197708|gb|ADY93164.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis G2136]
          Length = 680

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 238/666 (35%), Positives = 361/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQTAIGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAALGGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE  R+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQVREIAPMLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|82702013|ref|YP_411579.1| ATP-dependent DNA helicase RecG [Nitrosospira multiformis ATCC
           25196]
 gi|82410078|gb|ABB74187.1| ATP-dependent DNA helicase RecG [Nitrosospira multiformis ATCC
           25196]
          Length = 692

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 239/684 (34%), Positives = 371/684 (54%), Gaps = 26/684 (3%)

Query: 29  KIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR 88
           K++  G  + +    L+ + P  + D  +   IS++  +R V + G I + S    + RR
Sbjct: 16  KLLKLGITDASS---LILHLPFRYEDETHLYPISDVPADRTVQVEGTIIR-SEVMYRPRR 71

Query: 89  PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS 148
                + DGTG + + F       +K  +  G ++ + G+ +     + MVHP       
Sbjct: 72  QLVCQVEDGTGVLFMRFLNFYGSQIK-AYSVGTRVRLLGEARPGFFGVEMVHPKCRILRG 130

Query: 149 QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP------VLPEWIEKDLLQKKSFPSI 202
            +     +  +Y    GL  +  +K+I   L           L E + + + ++      
Sbjct: 131 NEPLPDALTPIYPSTAGLPSEALRKLISRVLQTGEGGNQEGTLCETLPESIRKRCQLQGF 190

Query: 203 AEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258
            ++   +H P          E T PA +R+ +DELLA Q+++ +  +Q +      +  +
Sbjct: 191 KDSVLFLHQPPPNASPALLRERTHPAWQRIKFDELLAQQLSMRVHYQQRRNGSAPVLIAK 250

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             + + +L+ +PF  T++Q+ A  +I +D+++ + M R+LQGDVGSGKT+VA +A+  ++
Sbjct: 251 NDLTRALLKLLPFDLTQAQKKAFAEISRDLTEPHPMQRLLQGDVGSGKTIVATLAVLQSI 310

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNT----QIIVEIITGNMPQAHRRKALERIAHG 374
           E   QA +MAP  ILA+QHY  +  +         + +  + GN  +  R   L  IA G
Sbjct: 311 ENNFQAALMAPTEILAEQHYRKLSTWLAPLLEPRGLRIAWLGGNQKKKERETTLADIAAG 370

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMTATP 430
            A + IGTHALFQ+ +++ +L LV++DEQHRFGV QRL L +K       PH L+M+ATP
Sbjct: 371 NALLAIGTHALFQNQVEFDRLGLVVIDEQHRFGVHQRLALREKGAGAYAMPHQLMMSATP 430

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL ++   D+D+S I E P GR P+ T ++   R DEV  R++    EGK+AYW+CP
Sbjct: 431 IPRTLSMSYYADLDVSVIDEMPPGRAPVVTKLVADARRDEVTARVREACREGKQAYWVCP 490

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            I+E +    ++ +E    L   F    I ++HGR+S  +K  VM++F  G   LL+ATT
Sbjct: 491 LIQESEALQLKTALETHQGLTGTFPELRIGLVHGRLSFQEKSDVMEAFARGEIHLLVATT 550

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVG+DV +AS+++IE+AE  GLAQLHQLRGR+GRG   S CIL+Y PPLS N+  RL 
Sbjct: 551 VIEVGVDVPNASLMVIEHAERMGLAQLHQLRGRIGRGAAGSVCILMYQPPLSPNARERLK 610

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           ++    DGF IA +DL+ R  GE LG +QSG+P    A  E    LL+ AR  A  +L  
Sbjct: 611 IIFENTDGFEIARQDLQLRGPGEFLGARQSGLPMLRFADLERDKDLLDTARTIAVELLRD 670

Query: 670 DPDLTSVRGQSIRILLYLYQYNEA 693
            P+  + R    R L    +Y  A
Sbjct: 671 YPE-AAKRHLH-RWLGRKSEYLRA 692


>gi|331083798|ref|ZP_08332907.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403223|gb|EGG82783.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 685

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 221/682 (32%), Positives = 358/682 (52%), Gaps = 17/682 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            +   +G+G+K    L+K+        T   D L Y+P  + +      +S+++  +   
Sbjct: 6   SIRNIKGIGEKTEKLLAKL------GITTVGDFLRYYPREYDEYTEPVGVSQVTAGKKCA 59

Query: 72  ITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           + G I+     +   R       L +    + L ++      L+N    G      G + 
Sbjct: 60  VMGRITGKVGVRNTGRLTIVTATLKEENSFLQLTWYN--MPFLRNTLRSGGFYIFRGMVT 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
               R  M  P              +  +Y L  GL+  L  K I + L    ++ E++ 
Sbjct: 118 DKNGRKTMEQPEIFKREDYKALLHSLYPIYGLTKGLTNKLMVKTIHQILENKEIVQEYLP 177

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           ++            A + IH P+  KD         RL +DE L   +++ +M+++ +  
Sbjct: 178 EEYRNYYQLAEYNYAVSHIHFPKDKKDLLLGHH---RLVFDEFLLFILSIRMMKEKTQDM 234

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
                       + ++  +P+  T +Q+    +I +DM+    M R++QGDVGSGKT++A
Sbjct: 235 PNSFAIKPVWETENVIDGLPYPLTNAQKRVWNEIERDMTGHTLMSRLVQGDVGSGKTIMA 294

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKAL 368
            +AM  A   G Q+ +M P  +LA+QH++ ++K  +     +   ++TG+     +R+  
Sbjct: 295 FLAMLLAAFNGYQSALMVPTEVLAKQHFKEMEKLLKEHQLPLKAVLLTGSNTAKEKRERC 354

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            +IA G+A +IIGTHAL Q+ ++Y  L LVI DEQHRFGVQQR  L++K T PHVL+M+A
Sbjct: 355 AQIASGEAKLIIGTHALIQEKVEYENLALVITDEQHRFGVQQREDLSKKGTRPHVLVMSA 414

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +   GD+DIS + E PA R PIK  ++  +        ++  + EG++ Y I
Sbjct: 415 TPIPRTLAIILYGDLDISVMDELPAKRLPIKNCVVDTSYRPRAYHFIQKQVEEGRQVYVI 474

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP +EE +  +  +V++    L E   S  S+A +HGRM   +K  +M++F     ++L+
Sbjct: 475 CPMVEESEGLDAENVIDYTQILKEALPSDISVAYLHGRMKAGEKNKIMEAFAANEIQVLV 534

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE  S CI +     +  +  
Sbjct: 535 STTVIEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEHQSYCIFVQGGQDT-ETKE 593

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL +L  + DGF IA EDL+ R  G+  GI+QSG+ +F IA       +L+ A + A  I
Sbjct: 594 RLEILVKSNDGFQIAGEDLRLRGPGDFFGIRQSGLMEFKIADIYQDAEILKEAGEAAGAI 653

Query: 667 LTQDPDLTSVRGQSIRILLYLY 688
           L  DPDL+  + + +R  L+ Y
Sbjct: 654 LALDPDLSLPQHERLRDRLFSY 675


>gi|157362881|ref|YP_001469648.1| ATP-dependent DNA helicase RecG [Thermotoga lettingae TMO]
 gi|157313485|gb|ABV32584.1| ATP-dependent DNA helicase RecG [Thermotoga lettingae TMO]
          Length = 783

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 243/673 (36%), Positives = 369/673 (54%), Gaps = 22/673 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            +   + VG +    L K+        +   DL+FY P  + DR     ISEIS E  +T
Sbjct: 110 EIKYAKRVGPRKEAILKKL------GISTLGDLIFYFPRDYEDRRKIIPISEISFEGKLT 163

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE--GRKITVTGKI 129
             G +    + ++        +L DG  ++ L +F +  E L         + I  TG +
Sbjct: 164 TRGKVVNVETKKIGSMTITAAVLADGVSQLLLKWFNQ--EYLHKGLQVLKNKTIYATGLV 221

Query: 130 KKLK-NRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           K  +   I MV+P     +   V    I  +Y L  G+S    ++I+ E +S +    + 
Sbjct: 222 KHSQFGGIEMVNPEIEPEDGTQVLE--ILPIYPLTHGISQKEIRRIVRENISCVCHYTDE 279

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           + ++L++K+    I+ A   IH P+          + ERLAY+EL   Q ALLL RK F+
Sbjct: 280 LPEELMKKRKLMDISRALLGIHFPKSNYHL---KKSIERLAYEELFLMQFALLLSRKSFE 336

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +  G+P  + GK+A++ LR +PF  T SQ+ A + I  D+     M R+LQGDVG GKT+
Sbjct: 337 EIGGLPKKIPGKLAEEFLRKLPFKLTDSQKEAHRQIRADLMSNKPMSRLLQGDVGCGKTV 396

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA +A+    EAG Q+ +MAP  ILA QHY  +    +   I   ++ G      + K  
Sbjct: 397 VAQLAIVDNFEAGFQSAVMAPTSILAMQHYRRMSPAFEEMGIRTALLLGETSSREKEKIK 456

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             ++ G+  ++IGTH L Q+ + +  L LVI+DEQHRFGV+QR  L  K  A   L+MTA
Sbjct: 457 RMLSDGEISVVIGTHTLIQEDVSFSNLGLVIIDEQHRFGVKQREALVSKGKALDTLVMTA 516

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL LT  GD+DI+ I E P GRK +KT+++ ++++++V E +K  ++EG + + +
Sbjct: 517 TPIPRTLALTIYGDLDITVIDEMPPGRKDVKTMLVSVSKLEQVYEFVKKEIAEGGQVFIV 576

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            P IEE  +   ++ +     L +       + ++HG+MS  +K+ +M+ F  G   +LI
Sbjct: 577 YPLIEESDKIQAKAAIRMHEYLSKKIFGEFRVGLLHGKMSQQEKDKIMERFATGEFDILI 636

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVGIDV  A+++IIEN E FGLAQLHQLRGR+GRG++   C L+    +  ++  
Sbjct: 637 STTVIEVGIDVPRATVMIIENPERFGLAQLHQLRGRIGRGDKQGYCFLVVG-NVDDDALE 695

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL     T++GF +AE D+K R  GEILG+KQ G+P+  IA       LL  AR DA+ I
Sbjct: 696 RLRYFSMTKNGFEVAEYDMKLRGPGEILGLKQHGLPELKIADLIRDRELLFRARNDAEEI 755

Query: 667 L---TQDPDLTSV 676
           +    Q PD+   
Sbjct: 756 VRKKEQYPDIVKK 768


>gi|76810269|ref|YP_334739.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1710b]
 gi|76579722|gb|ABA49197.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1710b]
          Length = 866

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/696 (36%), Positives = 379/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 182 KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 234

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 235 IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 293

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 294 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 352

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 353 LDVPPLADAVRMLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 412

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +    +      + ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT
Sbjct: 413 PAMPRRARDDGAALSARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKT 472

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 473 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAA 532

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           LE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 533 LEAAALGTAQLVIGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAG 592

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R++  
Sbjct: 593 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREA 652

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F
Sbjct: 653 ALAGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAF 712

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 713 SRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYS 772

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 773 GPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIE 832

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   P++ +      R L    QY +A
Sbjct: 833 PARDAAARLIAAHPEVVAQ--HLARWLGAREQYLKA 866


>gi|308069664|ref|YP_003871269.1| ATP-dependent DNA helicase recG [Paenibacillus polymyxa E681]
 gi|305858943|gb|ADM70731.1| ATP-dependent DNA helicase recG [Paenibacillus polymyxa E681]
          Length = 695

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 232/693 (33%), Positives = 367/693 (52%), Gaps = 19/693 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR + L     PL    GV       L K         +   D+L Y+P  + D   R  
Sbjct: 10  MRGNMLQLDQIPLKQIHGV-----SAL-KEGELHAFGISNIQDMLEYYPFRYEDYRLR-S 62

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           +SE+ +   +T+   I      Q   R+      L       T  +F R    +K     
Sbjct: 63  LSEVKDGDKITVQAKIMGIPVLQRYGRKSRLTCKLMAEDWMFTATWFNR--HFMKEQLTS 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           GR+I VTGK    +  + M      F +        ++ VYS+   ++    +K + + L
Sbjct: 121 GREIVVTGKWDLKR--MQMTVADSEFPDKGAARSGTLQPVYSIGGKITQSWMRKTMSQTL 178

Query: 180 SRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
            +   ++PE + + L++K S     +A   IH P+  ++ +     R R+ Y+EL   Q+
Sbjct: 179 QQFGEMIPEILPELLVRKYSMMPRKQAIAGIHQPQDNREGQEA---RRRMVYEELFLFQL 235

Query: 239 ALLLMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            +   R   +     +   V+    ++ +R +PF  T +Q+    +IL D+     M R+
Sbjct: 236 KMQAFRALNRGRADGVVHTVDNATIREFVRALPFELTDAQKKVELEILHDLRSPYCMNRL 295

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VA I + A V +G Q  +M P  ILA+QH   + K  +   I V ++TG
Sbjct: 296 LQGDVGSGKTVVAAIGLFATVRSGFQGALMVPTEILAEQHMRSLHKLFEPFGISVGLLTG 355

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           +     R++ L  +  G   I++GTHAL Q+ + + +L LV+ DEQHRFGV QR  L +K
Sbjct: 356 STTGKKRKELLAALQMGLLDIVVGTHALIQEDVYFRQLGLVVTDEQHRFGVNQRSVLRRK 415

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL MTATPIPRTL +T+ GD+D+S ++E+P GR PI T  +    +D V+  +  
Sbjct: 416 GYNPDVLTMTATPIPRTLAITAFGDMDVSTLSERPKGRIPISTYWVKHELMDRVLGFISR 475

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDS 536
            + +G++AY ICP IEE ++ + ++ ++    + + F    + ++HGRM+  +KE VM S
Sbjct: 476 EVDQGRQAYLICPLIEESEKLDVQNAIDLHIQMQQAFPHYRVGLLHGRMTPAEKEEVMRS 535

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F     +LL++TTV+EVG+DV +A+++II +A+ FGL+QLHQLRGRVGRG   S C+L+ 
Sbjct: 536 FYANEVQLLVSTTVVEVGVDVPNATLMIIMDADRFGLSQLHQLRGRVGRGAHASYCVLIA 595

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            P  S+    R+ V+ +T+DGF +A  DL  R  G+  G KQSG+P+F +A       +L
Sbjct: 596 DPK-SEVGQERMKVMTDTDDGFEVARRDLDLRGPGDFFGTKQSGLPEFRLADMVADFEVL 654

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           E AR+DA  ++      TS + +++R  L   Q
Sbjct: 655 EKAREDATDLIKDASFWTSPQYEALRGYLQKEQ 687


>gi|257899371|ref|ZP_05679024.1| ATP-dependent DNA helicase RecG [Enterococcus faecium Com15]
 gi|257837283|gb|EEV62357.1| ATP-dependent DNA helicase RecG [Enterococcus faecium Com15]
          Length = 678

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 226/695 (32%), Positives = 376/695 (54%), Gaps = 25/695 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           ++  VT+ G +           K+   +  +        + FF +    LK       +I
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVSFFNQ--PYLKEKVILSEEI 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V GK    +  +  +    I  +    +F     +Y +   +       +I +      
Sbjct: 112 AVYGKWDAKRKALNGMK---ILGSQTMDDFS---PIYHVNKSIRQTTLVDLIKKGFQEYG 165

Query: 184 VL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL- 241
            L  E +  +L++K      A A   +H P   K+ E    A+ R+ ++E    Q+ L  
Sbjct: 166 TLIEENLPNNLVEKYRLLDRASAVRSMHFP---KNHEENHQAKRRVVFEEFFLFQMRLQG 222

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L + +  +  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQGD
Sbjct: 223 LKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQGD 282

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ V ++TG+   
Sbjct: 283 VGSGKTVVAAIALYATVIAGFQGALMVPTEILAQQHMESLQQLFDPNEVTVALLTGSTKT 342

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR+ LE++  G+ +++IGTHAL QD +++  L LVI DEQHRFGV QR  L +K   P
Sbjct: 343 KERRELLEKLERGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWRP 402

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  +  L+ 
Sbjct: 403 DVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKELAR 462

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKN 539
           G + Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK+
Sbjct: 463 GHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFKD 522

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P 
Sbjct: 523 NQMQILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANPK 582

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F IA      ++LE+A
Sbjct: 583 -NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEVA 641

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           R++A  +            Q +   L +   +  +
Sbjct: 642 REEAAALWQIKNWQMLPEYQPLAQSLQIENQDNRY 676


>gi|124025499|ref|YP_001014615.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str.
           NATL1A]
 gi|123960567|gb|ABM75350.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str.
           NATL1A]
          Length = 846

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 255/688 (37%), Positives = 390/688 (56%), Gaps = 31/688 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + +S+ +GVG K +  LS +            DL+ Y P  ++D      I +    +
Sbjct: 147 LQSTISSVKGVGSKQAERLSTL------GLILIRDLINYFPRDYVDYSSLKTIDKTQAGQ 200

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTE-----MLKNV---F 117
            VTI   + + SSF+  K     IL   + D TG + +  F+          +K+    +
Sbjct: 201 NVTIVAKVRRCSSFKSPKNPNLSILELFIKDKTGGMKITRFFAGRRSSSIAYVKSQQSLY 260

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-----NFPLIEAVYSLPTGLSVDLFK 172
             G  + V+G +K+ K    +  P     +S +          I  VYSL  G++ D F+
Sbjct: 261 PVGATVAVSGLVKESKYGKSLNDPLIEIIDSPNGYLKSRTIGQILPVYSLTEGITADKFR 320

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            +I   L     + + + K+ L +   P   EAF  IHNP  +K     + A+ R+ +DE
Sbjct: 321 DLIQSILYLTSNIKDPLPKETLNRLDLPYRKEAFFHIHNPANSKTL---AKAKRRIVFDE 377

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKI---AQKILRNIPFSPTKSQESAIKDILQDMS 289
            L  Q++LLL R   KK     +++E  I     K L  +PFS T +Q   +K+I  D+ 
Sbjct: 378 FLLLQLSLLLRRDLHKKSDSPQLSIEPNINSLVGKFLSILPFSLTNAQRRVLKEIESDIV 437

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           +   M R+LQGDVGSGKT++A+ A+  AV++G Q   MAP  +LA QH++ + K+    +
Sbjct: 438 KAEPMSRLLQGDVGSGKTVIAISALLTAVQSGWQGAFMAPTEVLASQHFQTLSKWIPQLE 497

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           I V+++TG+ P++ R++ L  + +G   I++GTHALF+D + + +L LV+VDEQHRFGV+
Sbjct: 498 INVDLLTGSTPKSRRKQILTDLVNGSTKILVGTHALFEDPVVFERLGLVVVDEQHRFGVK 557

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR KL  K   PH+L MTATPIPRTL LT  GD+D+S++ E P GR PI T +I      
Sbjct: 558 QRNKLLNKGLQPHLLTMTATPIPRTLALTLHGDLDVSQLDELPPGRTPINTQLISPKDKK 617

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSD 527
              + ++  + +G + Y + P IEE ++    S V+  + L     S  ++ ++HG+M  
Sbjct: 618 YAYDLIRSEIKKGHQIYVVLPLIEESEKLELSSAVDVHHQLSTEIFSEFNVELLHGKMKS 677

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
           ++K+ V+ +F N    +L++TTVIEVG+DV +AS+++IE+++ FGLAQLHQLRGRVGRG 
Sbjct: 678 VEKQEVIQNFINKKSDILVSTTVIEVGVDVPNASVMLIEDSDRFGLAQLHQLRGRVGRGA 737

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C LL H   +K S  RL VL N+ DGF I+E DL+ R  G++LG KQSG+P F +A
Sbjct: 738 TKSYC-LLSHQNKNKLSRQRLDVLVNSNDGFEISEIDLRFRGPGQVLGTKQSGLPDFALA 796

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTS 675
                  +LEIARK+A+ IL  DP L++
Sbjct: 797 SLADDADVLEIARKEARIILDSDPLLSN 824


>gi|212639602|ref|YP_002316122.1| ATP-dependent DNA helicase RecG [Anoxybacillus flavithermus WK1]
 gi|212561082|gb|ACJ34137.1| RecG-like helicase [Anoxybacillus flavithermus WK1]
          Length = 682

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 224/681 (32%), Positives = 366/681 (53%), Gaps = 19/681 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   ++  +G+G++ +  L ++             LL++ P  + D      + E   + 
Sbjct: 5   LHQSVTAIKGIGEETAAALHEM------GIDTIEQLLYHFPFRYEDYR-ICALEEAKHDE 57

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            +TI G +          R+  ++          +         LK        +T+TGK
Sbjct: 58  KITIIGKVYSEPVLTYYSRKKSRLTFRVLVDRFLVTAVCFNQPYLKKKLILHETVTITGK 117

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPE 187
             K +  I +       H  +      IE VYS    L+V   ++ I  AL +    + +
Sbjct: 118 WDKHRQTITVQQ----LHIGEMKRQKEIEPVYSTRGDLTVKGMRRFIALALQQYGDAIVD 173

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-Q 246
            +  +LLQ     S  +A   IH P      E    AR RL Y+E L  Q+ +  ++K +
Sbjct: 174 PLPSELLQTYRLISKRDAIRAIHMPLS---HEQLKQARRRLVYEEFLLFQLKMQALKKYR 230

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            ++  GI         Q  ++++PF  T +Q+  +++I+QD+    RM R+LQGDVGSGK
Sbjct: 231 REQSPGIAHRFSDGQLQSFIQSLPFPLTNAQQRVVREIVQDLKSPYRMNRLLQGDVGSGK 290

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA +A+ A   +G Q  +M P  ILA+QH E +        I VE++T ++    R++
Sbjct: 291 TVVAAVALYAVYLSGYQGALMVPTEILAEQHAESLCTLLAPMGIRVELLTSSVKGKRRKQ 350

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE++A G  H+++GTHAL QD + + KL +VI DEQHRFGV+QR  L +K  +P VL M
Sbjct: 351 LLEQLALGDVHVVVGTHALIQDDVNFAKLGVVITDEQHRFGVEQRRILREKGQSPDVLFM 410

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL +T+ G++D+S I E P GRK I+T  +  + ++ V + +   +  G +AY
Sbjct: 411 TATPIPRTLAITAFGEMDVSIIDEMPKGRKKIETYWVKHDMLERVFQFMAKQVDAGHQAY 470

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP IEE ++ + ++ ++    L  ++     I ++HGR+S  +KE VM +F      +
Sbjct: 471 VICPLIEESEKLDVQNAIDVHAMLTHYYKGRYRIGLMHGRLSSEEKEEVMRAFSANDIHI 530

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVG++V +A++++I +A+ FGL+QLHQLRGRVGRG+  S CIL+  P  S+  
Sbjct: 531 LVSTTVVEVGVNVPNATVMVIYDADRFGLSQLHQLRGRVGRGQAQSYCILVADPK-SEAG 589

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ ++  T DGF+++E+DL+ R  G+  G KQSGMP+F +        +LE+AR+DA+
Sbjct: 590 KERMRIMTETNDGFVLSEKDLELRGPGDFFGTKQSGMPEFRLGDLVHDYRILEVARQDAE 649

Query: 665 HILTQDPDLTSVRGQSIRILL 685
            ++         +   +R  L
Sbjct: 650 RLIASPSFWREEKYTFLREHL 670


>gi|309379638|emb|CBX21809.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 680

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 238/666 (35%), Positives = 362/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYAGHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +   G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGSAAALRGNG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + R +PF+ T +QE+ + ++  DM+Q + M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 VLTQALRRALPFALTDAQENVLAEVQTDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I + P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDKLPPGRTPIKTRLVNNVRRAEVEGFVLNTCRKGRQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGELNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|24380195|ref|NP_722150.1| putative ATP-dependent DNA helicase, RecG [Streptococcus mutans
           UA159]
 gi|24378200|gb|AAN59456.1|AE015010_5 putative ATP-dependent DNA helicase, RecG [Streptococcus mutans
           UA159]
          Length = 671

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 238/667 (35%), Positives = 370/667 (55%), Gaps = 29/667 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + L+  +G+G K +    ++            DLL Y+P  + D      + ++ +  
Sbjct: 3   LQSSLAVLKGLGPKSAEKFHRL------GIYTIEDLLLYYPFRYEDF-KAKSVLDLLDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              +TG +   ++ Q    KR      +      I + FF +    L++     + I + 
Sbjct: 56  KAVVTGKVVTPANVQYYGFKRNRLSFKIKQDEAVIAVSFFNQ--PYLQDKVELDQDIAIF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPV 184
           GK  + K+ +  +       +        ++ VY +  G+S     K I  A     L  
Sbjct: 114 GKWDQKKSALTGMKILAQVTDD-------MQPVYHVAQGISQSALIKAIQSAFEAGYLRF 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL K        A   +H P   KD E    A  R+ ++EL   Q+ L +++
Sbjct: 167 LSENLPQVLLNKYRLLDRQTATRAMHFP---KDLEEYKQALRRIKFEELFYFQLNLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
              K E   + I  +       +  +PF+ T +Q+ ++ +IL DM     M R+LQGDVG
Sbjct: 224 ANNKSESNGLLITYDHDQVVAKIAALPFALTNAQKRSLDEILADMKSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A +AM AA  AG Q+ +M P  ILA+QHYE ++      ++ + ++T  M  A 
Sbjct: 284 SGKTVIASLAMYAAYSAGLQSALMVPTEILAEQHYESLRTLF--PELSIALLTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR AL  IA G   +I+GTHAL Q+ + Y+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 RRSALAAIADGSVDMIVGTHALIQEGVDYHKLGLVITDEQHRFGVKQRRLFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +   ++D+V+  +K  L + +
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSLIDELPAGRKPIVTRWVKHEQLDKVLPWVKEQLKKKE 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F  +++IA++HGRM + +KE++M +FK G+
Sbjct: 462 QVYVISPLIEESETLDLKNAVALEEDLKAYFASSANIALMHGRMKNDEKEAIMQAFKKGS 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRGE+ S  IL+ +P  +
Sbjct: 522 IDILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGEKRSYAILVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                R+ ++  T DGF++AEEDLK R  GEI G++QSG+P+F +A       +LE ARK
Sbjct: 581 DTGKNRMRIMTKTTDGFVLAEEDLKMRGSGEIFGVRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILT 668
            A  I+ 
Sbjct: 641 VASQIVA 647


>gi|56419721|ref|YP_147039.1| ATP-dependent DNA helicase RecG [Geobacillus kaustophilus HTA426]
 gi|56379563|dbj|BAD75471.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426]
          Length = 682

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 224/684 (32%), Positives = 367/684 (53%), Gaps = 23/684 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            +  P++  +G+G++ +  L+      +       +LL Y P  + D   +  ++ +  E
Sbjct: 4   AMQQPVTAVKGIGEETAAALA------DIGIATVGELLAYAPYRYDDY-EQKDLAAVRHE 56

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLND--GTGEITLLFFYRKTEMLKNVFFEGRKITV 125
             VT+ G +          ++  ++          IT++ F R    LK        +TV
Sbjct: 57  EKVTVEGKVYSAPLLTYYGKKKSRLSFRMLADRYLITVVCFNR--PYLKEKIALNETVTV 114

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PV 184
            GK  + +  I      Y            IE VYS+ + L+V   ++++  A  +    
Sbjct: 115 IGKWDRHRQTINA----YELRFGPAPETTGIEPVYSVRSPLTVKTMRRLMKAAFEQFGEH 170

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           +P+ +   L +        EA   +H PR  ++      AR RL Y+E L  Q+ +  +R
Sbjct: 171 IPDPLPPALRRAYRLVDKQEALRALHFPRTREEL---HQARRRLIYEEFLLYQLKMQALR 227

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +  + E   +  +   +     L  +PF  T +Q   I +IL DM    +M R+LQGDVG
Sbjct: 228 RLMRDERRGVVHSFSEERLSSFLSGLPFVLTNAQRRVIGEILADMRSPRQMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A+ AA  +G Q  +M P  ILA+QH   + +   +T + + ++T ++    
Sbjct: 288 SGKTVVAAVALYAAALSGFQGALMVPTEILAEQHARSLAELFADTDVTIALLTSSVKGKQ 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           R+  L  +  G   I++GTHAL Q+ +Q+ +L LVI DEQHRFGV+QR  L +K  AP V
Sbjct: 348 RKAVLAELEEGTIDIVVGTHALIQEGVQFRRLGLVITDEQHRFGVEQRRVLREKGHAPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S + E PAGRK ++T  +  ++   V++ ++  L  G 
Sbjct: 408 LMMTATPIPRTLAITAFGDMDVSVLDEMPAGRKKVETYWVKHHQFSRVLDFIEKELRRGH 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE  + + ++ ++  + L  ++     I ++HGR+S  +KE VM +F    
Sbjct: 468 QAYVICPLIEESDKLDVQNAIDVHSQLVHYYRGKYEIGLMHGRLSADEKERVMRAFSENR 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+  S CIL+  P  S
Sbjct: 528 IHVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDAQSYCILIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T DGF++AE+DL+ R  G+  G KQSG+P+F    P     +LE+AR+
Sbjct: 587 EVGKERMRIMTETADGFVLAEKDLELRGPGDFFGTKQSGLPEFRYGDPVHDYRILEVARR 646

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
           DA  +++            +R  L
Sbjct: 647 DAAKLVSSAAFWRDEAYAGLRAEL 670


>gi|254260325|ref|ZP_04951379.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1710a]
 gi|254219014|gb|EET08398.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1710a]
          Length = 902

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/696 (36%), Positives = 379/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 218 KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 270

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 271 IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 329

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 330 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 388

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 389 LDVPPLADAVRMLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 448

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +    +      + ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT
Sbjct: 449 PAMPRRARDDGAALSARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKT 508

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 509 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAA 568

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           LE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 569 LEAAALGTAQLVIGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAG 628

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R++  
Sbjct: 629 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREA 688

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F
Sbjct: 689 ALAGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAF 748

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 749 SRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYS 808

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 809 GPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIE 868

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   P++ +      R L    QY +A
Sbjct: 869 PARDAAARLIAAHPEVVAQ--HLARWLGAREQYLKA 902


>gi|160935086|ref|ZP_02082472.1| hypothetical protein CLOLEP_03962 [Clostridium leptum DSM 753]
 gi|156866539|gb|EDO59911.1| hypothetical protein CLOLEP_03962 [Clostridium leptum DSM 753]
          Length = 682

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 234/676 (34%), Positives = 357/676 (52%), Gaps = 24/676 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L + +GVG K +    K+             LL Y+P ++ D  +  +I     +  V I
Sbjct: 9   LQSLKGVGAKRAQLFEKL------GVDSVGALLRYYPRAYEDWSHPFEIDAAPFDCPVCI 62

Query: 73  TGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
              +    +    ++    Y+   +DG+  + L FF  +   + N+  +  +    GK+ 
Sbjct: 63  RAAVISKVTETRIRKGMTLYRCQASDGSSVMRLTFFNNR--YIPNLIKQNGEYLFYGKVG 120

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWI 189
               +  M  P +    +          VY    GLS    +  + +ALS LP  + + +
Sbjct: 121 GTFTKREMTSPSF----TTSAESSGFHPVYGQTEGLSSRQIEAAVRQALSLLPERVNDPL 176

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            ++L        + +A   IH P+           R RL ++EL   Q+ L  ++ + ++
Sbjct: 177 PEELRASYQLEELGQAIRDIHLPQSEPALNAA---RRRLIFEELFVLQLGLCQLKTRNRR 233

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E    +  +   +Q+    +PF PT +Q  A+ + + DM +K  M R++QGDVGSGKT V
Sbjct: 234 ETSCFLTAD--RSQEFFSCLPFPPTGAQRRAVAECVADMRRKTPMNRLIQGDVGSGKTAV 291

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A      A   G Q+  MAP  ILA+QHY  ++K  + T + V ++TG+  Q  RR+ L 
Sbjct: 292 AAALCYCAAREGIQSAFMAPTEILAEQHYHTMEKLFEGTGVSVALLTGSTKQRERRELLF 351

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +  GQ H++IGTHAL  D +++ +L LVI DEQHRFGV QR  L  K   PH+L+M+AT
Sbjct: 352 ALKAGQIHLLIGTHALLSDPVEFQRLGLVITDEQHRFGVAQRAALAGKGENPHLLVMSAT 411

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L   GD+D+S + E P GR+ I T  I   +       L+  L++G + Y +C
Sbjct: 412 PIPRTLALMIYGDLDVSVLDELPPGRQKIDTFWIDSKKRGRAYGFLQKHLNQGLQGYIVC 471

Query: 490 PQIE-EKKESNFRSVVERFNSL--HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           P +E E  E++  S VE   SL   E     + ++HGRM   +KE+VM +F  G   LL+
Sbjct: 472 PLVENESGEASLASAVEYAESLKAREFRDYRVGLLHGRMKPAEKEAVMRAFSRGELDLLV 531

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG+DV +A I++IENAE FGL+QLHQLRGRVGRG+E S CIL+     ++ +  
Sbjct: 532 STTVIEVGVDVPNAVIMLIENAERFGLSQLHQLRGRVGRGKEKSYCILVSDAQ-NEEAVY 590

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL  +  T DGF IA+EDLK R  G+  G +Q G+P+  IA       +L  A++ AK +
Sbjct: 591 RLKAMCRTNDGFQIADEDLKLRGPGDFFGARQHGLPELKIADMLGDMDILSQAQQAAKIL 650

Query: 667 LTQDPDLTSVRGQSIR 682
           L +DP L+    + I+
Sbjct: 651 LKKDPALSFPEHRGIK 666


>gi|312892401|ref|ZP_07751896.1| ATP-dependent DNA helicase RecG [Mucilaginibacter paludis DSM
           18603]
 gi|311295185|gb|EFQ72359.1| ATP-dependent DNA helicase RecG [Mucilaginibacter paludis DSM
           18603]
          Length = 702

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 241/689 (34%), Positives = 363/689 (52%), Gaps = 25/689 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE- 67
              P+   +GVG   +  L K +         F DLL + P  +IDR    KI E + + 
Sbjct: 6   FQTPIEYLKGVGVARADVLKKEL-----GIFTFADLLRHFPYKYIDRTRFYKIREANPDL 60

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V I   +        +  +     + D TG + L +F +  + ++     G+   V G
Sbjct: 61  PHVQIIVRLKSKEILGEKHTKRLIAQVYDDTGTMELAWF-QGIKWIEKSLIVGKAYVVFG 119

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLS-----VDLFKKIIVEAL 179
           K      +  M HP    ++ + +       ++  YS    L          +K+I   L
Sbjct: 120 KPGLFNGKAQMAHPEIELYSPEAIKKQGNLKLQPAYSSTEKLKPFSLDSKGIQKLIAILL 179

Query: 180 SRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
            +    + E I + LLQK       EA+  IH P    D    + A +RL ++EL   Q 
Sbjct: 180 EQTAKDIEESIPQHLLQKLRLIGRREAYMNIHFP---ADTSHLNLAVDRLKFEELFFIQF 236

Query: 239 ALLLMRK-QFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLR 296
            LL  +     K  G      G    +  +N +PF  T +Q+  +K+I QD  +  +M R
Sbjct: 237 KLLKNKLLHTLKFKGNIFGTVGSYFNEFYKNKLPFDLTNAQKRVLKEIRQDTQRGIQMNR 296

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VAL++M  A++ G Q  IMAP  ILA QHY+ I++   +  + V ++T
Sbjct: 297 LLQGDVGSGKTVVALMSMLLAIDNGFQTCIMAPTEILANQHYQSIEQLIDDEFLEVALLT 356

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-T 415
           G+     R+   +++  G   I+IGTHAL +D +Q+  L  V++DEQHRFGV+QR KL  
Sbjct: 357 GSTSAKKRKVLHQKLESGDLKILIGTHALIEDKVQFKNLGFVVIDEQHRFGVEQRAKLWR 416

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +    PHVL+MTATPIPRTL +T  GD+D+S I E PAGRKPI+T+ +  +    +   +
Sbjct: 417 KNIIPPHVLVMTATPIPRTLAMTLYGDLDVSVIDELPAGRKPIETLHLYDSHRLRMFGFM 476

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKES 532
           K  + +G++ Y + P I+E ++ + +++ +    +   F      I+I+HG+MS  DK+ 
Sbjct: 477 KREIDKGRQVYVVYPLIKESEKLDLKNLTDGIEVMAREFPLPQYRISIVHGQMSASDKDF 536

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M  F  G  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG E S C
Sbjct: 537 EMQRFIKGETQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYC 596

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           IL+    LS +   RL  +  T +GF I+E DL+ R  G I G +QSG+    +A     
Sbjct: 597 ILMSSHKLSHDGKIRLETMVKTNNGFEISEIDLQLRGPGNIEGTQQSGVLDLKLANLATD 656

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL IARK  + I  +DP L     Q +
Sbjct: 657 QQLLMIARKCVEGIFEKDPQLQLPENQIL 685


>gi|304404155|ref|ZP_07385817.1| ATP-dependent DNA helicase RecG [Paenibacillus curdlanolyticus YK9]
 gi|304347133|gb|EFM12965.1| ATP-dependent DNA helicase RecG [Paenibacillus curdlanolyticus YK9]
          Length = 682

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 234/679 (34%), Positives = 368/679 (54%), Gaps = 20/679 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+   +GV  +      K             DLL Y P  + D   R  ++E+ +   VT
Sbjct: 7   PVRQVKGVSAQ------KEGELHAFGVHTVADLLDYFPFRYEDYRLR-DLTEVKDGEKVT 59

Query: 72  ITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G+I    +     + +      +      +T ++F R    L++    GR+IT+TGK 
Sbjct: 60  VQGHIRSLPAVARFGRGKARMSCKVEIDHFLVTAVWFNR--AFLQDQLVLGREITLTGKW 117

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
              ++++ +    +   +        ++ VYS+   L+    +K I +AL +   ++ + 
Sbjct: 118 DANRHQLTVSESEF--PDRGKSRSGSLQPVYSVGGSLTQPFMRKAIGQALIQFGDLIEDS 175

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   L+ K       EA   IH+P  A + +     R RL Y+EL   Q+ L   R   +
Sbjct: 176 LPPQLISKHRLIPRQEAVMRIHHPEGAAEGQGA---RRRLVYEELFWFQLKLQAYRSLLR 232

Query: 249 KEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
                +   ++  + +     +PF  T SQ+  + +I QDM QK+ M R+LQGDVGSGKT
Sbjct: 233 TRSDGMAFPIDSAVIRDFAARLPFELTDSQKKVVNEITQDMRQKHGMNRLLQGDVGSGKT 292

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IA+ AA +AG Q  +M P  ILA+QH   +++    T + V ++TG++    RR  
Sbjct: 293 VVAAIALYAAAKAGHQGALMVPTEILAEQHLRSLQRLFDGTGVEVGLLTGSVTARKRRDI 352

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  +  G   I IGTHAL QD + +  L LV+ DEQHRFGV QR  L +K  +P VL MT
Sbjct: 353 LAGLQMGMIDIAIGTHALIQDDVIFRSLGLVVTDEQHRFGVNQRSVLRRKGLSPDVLTMT 412

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ GD+D+S + E+P GRKPIKT     + +D V E ++    +G++AY 
Sbjct: 413 ATPIPRTLAITAFGDMDVSTLRERPKGRKPIKTHWTKPSAMDRVFEFIQREADQGRQAYV 472

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           ICP IEE ++ + ++ ++   ++        + ++HGRM+  +K+  M +F     ++L+
Sbjct: 473 ICPLIEESEKLDVQNAIDMHATIAMSLPKLKVGLLHGRMTTAEKDEAMRAFGANETQVLV 532

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTV+EVG+DV +A++I+I +AE FGL+QLHQLRGRVGRGE  S CIL+  P  S+    
Sbjct: 533 ATTVVEVGVDVPNATLIVIIDAERFGLSQLHQLRGRVGRGEHQSHCILVADPK-SETGRE 591

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ V+  T+DGF +A +DL+ R  G+  G KQSG+P+F +A        LE AR+DA  +
Sbjct: 592 RMKVMTETDDGFEVARKDLELRGPGDFFGTKQSGVPEFKLADMVADFETLEEAREDAAEL 651

Query: 667 LTQDPDLTSVRGQSIRILL 685
            ++    T+     +R  L
Sbjct: 652 TSEPDFWTASAYADLRQRL 670


>gi|293570719|ref|ZP_06681769.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E980]
 gi|291609191|gb|EFF38463.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E980]
          Length = 678

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 225/695 (32%), Positives = 376/695 (54%), Gaps = 25/695 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIRTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           ++  VT+ G +           K+   +  +        + FF +    LK       +I
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVSFFNQ--PYLKEKVILSEEI 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V GK    +  +  +    I  +    +F     +Y +   +       +I +      
Sbjct: 112 AVYGKWDAKRKALNGMK---ILGSQTMDDFS---PIYHVNKSIRQTTLVDLIKKGFQEYG 165

Query: 184 VL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL- 241
            L  E +  +L++K      A A   +H P   K+ E    A+ R+ ++E    Q+ L  
Sbjct: 166 TLIEENLPNNLVEKYRLLDRASAVRSMHFP---KNHEENHQAKRRVVFEEFFLFQMRLQG 222

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L + +  +  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQGD
Sbjct: 223 LKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQGD 282

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ V ++TG+   
Sbjct: 283 VGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTVALLTGSTKT 342

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR+ LE++  G+ +++IGTHAL QD +++  L LVI DEQHRFGV QR  L +K   P
Sbjct: 343 KERRELLEKLERGEINVVIGTHALIQDGVEFQNLGLVITDEQHRFGVNQRKVLREKGWRP 402

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  +  L+ 
Sbjct: 403 DVLFMTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKELAR 462

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKN 539
           G + Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK+
Sbjct: 463 GHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFKD 522

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L++TTVIEVG+++ +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P 
Sbjct: 523 NQMQILVSTTVIEVGVNMPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANPK 582

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F IA      ++LE+A
Sbjct: 583 -NELGVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEVA 641

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           R++A  +            Q +   L +   +  +
Sbjct: 642 REEAAALWQIKNWQMLPEYQPLAQSLQIENQDNRY 676


>gi|330684637|gb|EGG96342.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis VCU121]
          Length = 682

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 218/660 (33%), Positives = 366/660 (55%), Gaps = 18/660 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+  +G+G K    L ++      N     DL+ Y P+ + D      ++E  ++  VT
Sbjct: 12  PLNQIKGIGPKRLAVLQEL------NINTVEDLILYLPTRYEDNTVI-DLNEAEDQSTVT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +     R   K+ ++    +I +   +     LK        +TV GK  +
Sbjct: 65  VQGEVYSSPTVAFFGRNKSKLTVHIMVNQIAVKCVFFNQPYLKKKIELHGTVTVKGKWNR 124

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
            K  I        F+   ++N   +E VY +  G+     +  I ++L+ + V+ EW+  
Sbjct: 125 SKQEINGNR--MFFNQQDNLNDTQLEPVYRIKEGIKQKQLRDHIRQSLNDV-VIHEWLSD 181

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKE 250
           +L  K    ++    N +H+P+  +D       R   A+ EL   ++ +  L R +   +
Sbjct: 182 ELRNKYKLETLEFTLNHLHHPQGKQDLLRA---RRTYAFTELFMFELRMQWLNRLEKASD 238

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             I I  + +  +  + ++PF  T +Q++++ +I +D+    RM R+LQGDVGSGKT+VA
Sbjct: 239 DAIEIEYDIQKVKAFIDSLPFELTDAQKTSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVA 298

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            I M A   AG Q+ +M P  ILA+QH E + +   +T   V ++TG++    RR  LE+
Sbjct: 299 AICMYALKTAGYQSALMVPTEILAEQHAESLIQLFGDTM-NVALLTGSVKGKKRRILLEQ 357

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           + +G    +IGTHAL QD + +  + LVI DEQHRFGV QR +L +K    +VL MTATP
Sbjct: 358 LENGTIDCLIGTHALIQDDVTFDNVGLVITDEQHRFGVNQRQRLREKGAMTNVLFMTATP 417

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL ++  G++D+S I + P GRKPI T      + ++V+ ++   L +G++AY ICP
Sbjct: 418 IPRTLAISVFGEMDVSSIKQLPKGRKPIITSWAKHEQYEQVLTQMTNELKKGRQAYVICP 477

Query: 491 QIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            IE  +   + ++VVE F SL +++    + ++HG++S+ +K+ VM  F      +L++T
Sbjct: 478 LIESSEHLEDVQNVVELFESLQQYYGENKVGLLHGKLSNEEKDEVMHRFSEHEIDILVST 537

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R+
Sbjct: 538 TVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERM 596

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 597 TIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANIVEDYRMLEVARDEAGELIQ 656


>gi|256823635|ref|YP_003147598.1| ATP-dependent DNA helicase RecG [Kangiella koreensis DSM 16069]
 gi|256797174|gb|ACV27830.1| ATP-dependent DNA helicase RecG [Kangiella koreensis DSM 16069]
          Length = 700

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 251/678 (37%), Positives = 378/678 (55%), Gaps = 21/678 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P ++ +GVG K +  L K+      +    +DLLF+ P  + DR     I+ + +     
Sbjct: 16  PCTSLKGVGPKVAEKLEKL------HIQSVLDLLFHLPLRYEDRTRVRTIASLKDGERAL 69

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   + + +  +  KRR      +D +  I   FFY      +     G +    G++++
Sbjct: 70  IKVTV-ELAQVKFGKRRSLVCRASDESASIDFRFFYFNKGQQQR-LQRGAEFYAFGEVRR 127

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
              +  MVHP    I   +       +  +Y    GL    F+ ++ +A++ L    +  
Sbjct: 128 YGFQFSMVHPELTAINSTTSAPLLESLTPIYPATEGLHQASFRHMMRQAVALLKKHPIDN 187

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            + + LLQ    P +  +   IH+P K  D        +PA  RL  +ELLA Q++LLL 
Sbjct: 188 LLPQSLLQSLKLPDVNASLAWIHSPPKDADLVQLQSNQTPAVRRLISEELLAQQLSLLLQ 247

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R Q K      +   GK+  ++L+ +PF PTK+Q+   ++I+ D+ Q + MLR+LQGDVG
Sbjct: 248 RNQQKDYSAPVLKNSGKLQDQLLQQLPFKPTKAQQRVTQEIISDLEQPHPMLRLLQGDVG 307

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKTLVA +A   A+EAG Q  IMAP  +LA QHY+   ++ +   I    +   +  + 
Sbjct: 308 AGKTLVAALAALQAIEAGYQVAIMAPTELLANQHYQSFGQWFEAMNIPCVFLASKLTASQ 367

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TA 420
           R+ ALE IA G+A +I+GTHALFQ  ++Y+KL L I+DEQHRFGV QRL L QKA     
Sbjct: 368 RKSALESIASGEAKLIVGTHALFQKGVEYHKLGLAIIDEQHRFGVNQRLMLKQKAPDGMQ 427

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            H L+MTATPIPRTL +T   D+D+S I E P GR P++TV +   + D+VI+R++    
Sbjct: 428 LHQLMMTATPIPRTLAMTVYADMDVSIIDELPPGRTPVQTVALSDQKRDQVIQRIETACR 487

Query: 481 -EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            E ++ YW+C  I+E +E   ++     N L E   +  + ++HGR+    K+ VMD FK
Sbjct: 488 DENRQVYWVCTLIDESEEIQCQAAESAANLLTEQLPNCRVGLLHGRLKPEQKQLVMDKFK 547

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTVIEVG+DV +AS+++IEN E  GL+QLHQLRGRVGRG   S C+LLY  
Sbjct: 548 QGDLDILVATTVIEVGVDVPNASLMVIENPERLGLSQLHQLRGRVGRGSVESHCVLLYQH 607

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS N+  R+ V++ T DGF+IAEEDL+ R  GE+LG +Q+G      A       L+  
Sbjct: 608 PLSDNAKARIQVMRETNDGFVIAEEDLRLRGPGEMLGTRQTGEVSLRFANLVRDAELIPA 667

Query: 659 ARKDAKHILTQDPDLTSV 676
            ++ A  ++ ++  L   
Sbjct: 668 IQQQAHDLIAENSQLAHK 685


>gi|309781309|ref|ZP_07676045.1| ATP-dependent DNA helicase RecG [Ralstonia sp. 5_7_47FAA]
 gi|308919722|gb|EFP65383.1| ATP-dependent DNA helicase RecG [Ralstonia sp. 5_7_47FAA]
          Length = 757

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 239/674 (35%), Positives = 362/674 (53%), Gaps = 34/674 (5%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE----ERIVTITGYISQH 79
           +  L+K+         R +DL+ + P  + D      I+E +          + G +++ 
Sbjct: 74  ADKLAKL------GLHRDVDLVLHLPMRYEDETTLLTIAEATARANTGWAAQVEGTVTR- 126

Query: 80  SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           +    + RR   + + D +GE+ L F       +K +  EG ++ V G+++       MV
Sbjct: 127 NEVAFRPRRQLVVHIADDSGELVLRFLNFYGSQVKQM-AEGVRLRVRGEVRGGFFGAEMV 185

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQ 195
           HP        +     +  VY    G++    +K I+ AL+R P LPE +   L    L 
Sbjct: 186 HPTVRAVAEDEPLPDRLTPVYPSTAGVAQAYLRKAILNALARTP-LPETLPNSLITGPLA 244

Query: 196 KKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
                + A+A  ++H P    D     E T PA  R+ +DELL+ Q++L   +   +   
Sbjct: 245 PLKLMTPADAVRLLHQPTPDVDEHSLVERTHPAWLRIKFDELLSQQLSLKRAQAARRMRN 304

Query: 252 GIPINVEGKI--AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
              +   GK     + +  +PF  T +Q     +I  D++    M R+LQGDVGSGKT++
Sbjct: 305 APILRDSGKDGLLARFMNALPFKLTGAQARVWDEIRADLAHPYPMQRLLQGDVGSGKTVI 364

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A +A   A++AG QA +MAP  +LA+QHY  +  + +   + +  + G++ +  + +A  
Sbjct: 365 AALAACQAIDAGWQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAA 424

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT----------QKAT 419
           R+A G A ++IGTHAL QD++ + +L L +VDEQHRFGV QRL L             A 
Sbjct: 425 RVAAGTAQLVIGTHALIQDAVTFARLGLAVVDEQHRFGVAQRLALRGKASNGDAPAANAQ 484

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVIER+    
Sbjct: 485 VPHQLMMSATPIPRTLAMTYYADLDVSAIDELPPGRTPIVTRLVNDARRDEVIERIYAAA 544

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            EG++ YW+CP IEE +    ++ VE F +L +      + ++HGR+   +K +VM +F 
Sbjct: 545 REGRQVYWVCPLIEESEALQLQTAVETFETLSQSLQGLKVGLVHGRLPSAEKAAVMSAFA 604

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  
Sbjct: 605 GGDLHVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCVLLYQA 664

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS  +  RL  ++ T DGF IA  DL+ R  GE LG +QSG      A       L+E 
Sbjct: 665 PLSPTAKQRLQTMRETTDGFEIARRDLEIRGPGEFLGARQSGEAMLRFADLNHDAWLVEF 724

Query: 659 ARKDAKHILTQDPD 672
           A+  A  +L + P+
Sbjct: 725 AQGAADAMLARFPE 738


>gi|261419384|ref|YP_003253066.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y412MC61]
 gi|319766199|ref|YP_004131700.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y412MC52]
 gi|261375841|gb|ACX78584.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y412MC61]
 gi|317111065|gb|ADU93557.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y412MC52]
          Length = 682

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 224/684 (32%), Positives = 367/684 (53%), Gaps = 23/684 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            +  P++  +G+G++ +  L+      +       +LL Y P  + D   +  ++ +  E
Sbjct: 4   AMQQPVTAVKGIGEETAAALA------DIGIATIGELLAYAPYRYDDY-EQKDLAAVRHE 56

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLND--GTGEITLLFFYRKTEMLKNVFFEGRKITV 125
             VT+ G +          ++  ++          IT++ F R    LK        +TV
Sbjct: 57  EKVTVEGKVYSAPLLTYYGKKKSRLSFRMLADRYLITVVCFNR--PYLKEKIALNETVTV 114

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PV 184
            GK  + +  I      Y            IE VYS+ + L+V   ++++  A  +    
Sbjct: 115 IGKWDRHRQTINA----YELRFGPAPETTGIEPVYSVRSPLTVKTMRRLMKAAFEQFGEH 170

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           +P+ +   L +        EA   +H PR  ++      AR RL Y+E L  Q+ +  +R
Sbjct: 171 IPDPLPPALRRAYRLVDKQEALRALHFPRTREEL---HQARRRLIYEEFLLYQLKMQALR 227

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +  + E   +  +   +     L  +PF  T +Q   I +IL DM    +M R+LQGDVG
Sbjct: 228 RLMRDERRGVVHSFSEERLSSFLSGLPFVLTNAQRRVIGEILADMRSPRQMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A+ AA  +G Q  +M P  ILA+QH   + +   +T + + ++T ++    
Sbjct: 288 SGKTVVAAVALYAAALSGFQGALMVPTEILAEQHARSLAELFADTDVTIALLTSSVKGKQ 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           R+  L  +  G   I++GTHAL Q+ +Q+ +L LVI DEQHRFGV+QR  L +K  AP V
Sbjct: 348 RKAVLAELEEGTIDIVVGTHALIQEGVQFRRLGLVITDEQHRFGVEQRRVLREKGHAPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S + E PAGRK ++T  +  ++   V++ ++  L  G 
Sbjct: 408 LMMTATPIPRTLAITAFGDMDVSVLDEMPAGRKKVETYWVKHHQFSRVLDFIEKELRRGH 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE  + + ++ ++  + L  ++     I ++HGR+S  +KE VM +F    
Sbjct: 468 QAYVICPLIEESDKLDVQNAIDVHSQLVHYYRGKYEIGLMHGRLSADEKERVMRAFSENR 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+  S CIL+  P  S
Sbjct: 528 IHVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDAQSYCILIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T DGF++AE+DL+ R  G+  G KQSG+P+F    P     +LE+AR+
Sbjct: 587 EVGKERMRIMTETADGFVLAEKDLELRGPGDFFGTKQSGLPEFRYGDPVHDYRILEVARR 646

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
           DA  +++            +R  L
Sbjct: 647 DAAKLVSSAAFWRDEAYAGLRAEL 670


>gi|226198358|ref|ZP_03793927.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei Pakistan
           9]
 gi|225929541|gb|EEH25559.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei Pakistan
           9]
          Length = 903

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/696 (36%), Positives = 378/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 219 KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 271

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 272 IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 330

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 331 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 389

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 390 LDVPPLADAVRMLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 449

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +    +      +  +   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT
Sbjct: 450 PAMPRRARDDGAALSACLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKT 509

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 510 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAA 569

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           LE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 570 LEAAALGTAQLVIGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAG 629

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R++  
Sbjct: 630 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREA 689

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F
Sbjct: 690 ALAGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAF 749

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 750 SRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYS 809

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 810 GPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIE 869

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   P++ +      R L    QY +A
Sbjct: 870 PARDAAARLIAAHPEVVAQ--HLARWLGAREQYLKA 903


>gi|33240278|ref|NP_875220.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237805|gb|AAP99872.1| RecG-like helicase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 841

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 241/701 (34%), Positives = 380/701 (54%), Gaps = 33/701 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           + +PL   +GVG K     + +      N     DLLF++P  ++D     +I  +    
Sbjct: 142 IDSPLGEVKGVGTKMCECFAAL------NLFVIKDLLFHYPRDYVDYSSLKRIFSLVPGE 195

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVF-------- 117
             TI   I + +S+   + +   IL   L D TG I +  F+      K  F        
Sbjct: 196 TTTIIATIRRSNSYTSPRNQNLSILELHLEDMTGRIKISKFFIGRRFSKRSFLKKQESLY 255

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-----NFPLIEAVYSLPTGLSVDLFK 172
            +G  + V+G +K          P       +           I  +Y L  GL  D  +
Sbjct: 256 PKGTIVAVSGLVKGNSYGKSFNDPLIEVLEHKQALLKSQTIGRILPIYQLTDGLKADRLR 315

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           +I+   +     L + +  +  +  S     EA   IH PR     E+   A+ RL +DE
Sbjct: 316 QIVHSVIPLALDLEDPLPVNTRESLSLLDKGEAIKQIHRPRNQ---EYLKKAKRRLVFDE 372

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGK---IAQKILRNIPFSPTKSQESAIKDILQDMS 289
            L  Q+ LL  R +  K     + +  +     ++ L+ +PF+ T SQ+  +  I  D++
Sbjct: 373 FLFLQLGLLKRRLELGKCKAPSLFINKEREGFTEQFLKLLPFALTNSQQQVLTQIESDIA 432

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
               M R++QGDVG GKT+VA+ A+  AVE+G Q   MAP  +LAQQHY  + K+     
Sbjct: 433 MSKPMSRLVQGDVGCGKTVVAIAALLRAVESGWQGAFMAPTEVLAQQHYLTLCKWLPQLH 492

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + VE++TG+     R++    +++G   II+GTHAL ++S+ + +L LV+VDEQHRFGV 
Sbjct: 493 VTVELLTGSTAAKERKRIFADLSNGNLKIIVGTHALIEESVSFRRLGLVVVDEQHRFGVN 552

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR  L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI+T ++P +   
Sbjct: 553 QRNLLLNKGLHPHLLTMTATPIPRTLALSIHGDLDVSQINELPPGRTPIETQLMPSSERY 612

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSD 527
           +  E +K  L  G +AY + P ++E ++   RS ++ ++ L         + ++HGRM  
Sbjct: 613 QAYEAIKEQLDIGSQAYVVLPLVDESEKLELRSAIDVYHELSSEILSEYKVGLLHGRMHS 672

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K+ +++ F N   ++L++TTV+EVG+DV +A++++I++A+ FGLAQLHQLRGRVGRG 
Sbjct: 673 SEKKGIINKFVNKEIEVLVSTTVVEVGVDVPEATMMVIDHADRFGLAQLHQLRGRVGRGT 732

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           + S CIL+     S  S  RL VL N+ DGF I+E DL+ R  G++LG +QSG+P F +A
Sbjct: 733 KDSKCILIDTAK-SLASKNRLEVLVNSHDGFEISEIDLRLRGPGQVLGTRQSGLPDFALA 791

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLY 688
                +++LE AR++A+ IL  DPDL  ++ + ++I+L  Y
Sbjct: 792 NLVNDETILESAREEAEKILKSDPDL--IQNKLLKIMLDDY 830


>gi|300361942|ref|ZP_07058119.1| DNA helicase RecG [Lactobacillus gasseri JV-V03]
 gi|300354561|gb|EFJ70432.1| DNA helicase RecG [Lactobacillus gasseri JV-V03]
          Length = 679

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 227/691 (32%), Positives = 378/691 (54%), Gaps = 31/691 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF P++  +GVG K +  L+ +            DLLFY P  + D      + +I + +
Sbjct: 8   LFEPVTELKGVGAKTATALAGL------GINTIYDLLFYFPFRYDDLETI-PLDQIEDGQ 60

Query: 69  IVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            V + G +      S F  +K R  +K+ ++     I + FF +    LK+    G+++ 
Sbjct: 61  KVLLKGIVVTDPFVSRFGYRKTRLSFKMKIDHD--IIMVNFFNQ--PWLKDKVESGKEVA 116

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           V GK +  +  +       +    +D  F     +YS+   L  +  +K+I  AL   LP
Sbjct: 117 VYGKYQVGRQSLSGFK---LVAEKKDSGFA---PIYSVNRHLKQNKLQKLIDLALEEVLP 170

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-ALLL 242
            + E I   L +K    S       +H+P+   +      AR    + E    Q+    L
Sbjct: 171 EVGETIPAVLREKYRLLSDQTLVEKMHHPKNGNE---AKIARRSAIFREFFLFQVQLAQL 227

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           + ++ +   GI    +    +++++ IPF  +  Q+  + +I  D+    +M R+LQGDV
Sbjct: 228 LSQRDEDVPGIEKRYDLAAVKELIQAIPFELSDDQKKVVNEIFADLHSPRQMRRLLQGDV 287

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA+ A+ AA+ AG QA +M P  ILAQQH+  + +  +   + V ++TG+  + 
Sbjct: 288 GSGKTVVAVFAIYAAITAGFQAALMVPTEILAQQHFTKVDELLRPLGVRVALLTGDTKEL 347

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +++    +A G  +++IGTHAL Q  + +  L LVI+DEQHRFGV QR  L +K  AP 
Sbjct: 348 EKKEIYRELADGTINVVIGTHALIQKDVHFKNLGLVIIDEQHRFGVNQRNTLIKKGVAPD 407

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL LT  GD+ +S+I   P GRKP+ +     +++ EV+E +++ L +G
Sbjct: 408 VLAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLKEVLELMRLQLDKG 467

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGT 541
            + Y + P I E ++S+ ++  +    L  +F   ++ ++HG+M    K  +MDSF  G 
Sbjct: 468 FQIYVVTPLISESEKSDLKNAEDLQARLAHYFKDENVVLLHGQMKGNQKNEIMDSFAAGK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ +  P  +
Sbjct: 528 IDILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK-T 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++ +T +GF +AEEDLK R EG++ G  QSG+P+F +       + L  A+K
Sbjct: 587 EIGKKRMKIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNTLVTAQK 646

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           +A+ ++  DP+LTS      + LL + +Y +
Sbjct: 647 EARTLIKADPNLTSSEN---KFLLEVLKYKK 674


>gi|167618758|ref|ZP_02387389.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis Bt4]
          Length = 729

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 256/696 (36%), Positives = 381/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 45  KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 97

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 98  IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 156

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 157 PSVKVVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALTRTP-LPELLPPEVARAYLQP 215

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              PS+A+A  I+H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 216 LDVPSLADAVRILHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 275

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +    +      + ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT
Sbjct: 276 PAMPRRARDDGASLSARLYAALPFTLTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKT 335

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 336 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKDKRAA 395

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           LE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 396 LEAAALGTARLVIGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAG 455

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R++  
Sbjct: 456 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREA 515

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F
Sbjct: 516 ALAGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAF 575

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 576 SRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYS 635

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 636 GPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIE 695

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A H++   PD+ +      R L    QY +A
Sbjct: 696 PARDAAAHLIAGHPDVVAQ--HLARWLGAREQYLKA 729


>gi|312984225|ref|ZP_07791571.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus CTV-05]
 gi|310894444|gb|EFQ43520.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus CTV-05]
          Length = 678

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 216/683 (31%), Positives = 366/683 (53%), Gaps = 22/683 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +  L      G+       DLLFY P  + D      + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTTAAL------GSLGIYSIYDLLFYFPFRY-DELQTLPLDQIMD 56

Query: 67  ERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            + V + G ++  +       K+      +      I + FF +    LKN    G+++ 
Sbjct: 57  GQKVMLKGIVATEAFVSRFGYKKTRLSFKMRIDHDVIMVNFFNQ--PWLKNKIEIGQEVA 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-P 183
           + GK    +  +      + F  +++ N   +  +Y +   +       +I  A+     
Sbjct: 115 IYGKYNVARQSLTA----FKFVAAKE-NDSGMAPIYPVNRHVKQKKLVDLINVAIDDFID 169

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + + + L Q+            +H+P+ + + E     +    + E    ++ L L+
Sbjct: 170 QVQDIVSEKLRQEYRLLKDQVIIEKMHHPKNSHEAELA---KRSAIFREFFIFELQLALL 226

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            +   K++G     +     ++ +++PF  +  Q+  + +I  DM    +M R+LQGDVG
Sbjct: 227 TRNDGKQMGYAKKYDLTEIAQLTKSLPFELSDDQKHVVNEIFADMHSDGQMRRLLQGDVG 286

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ A+ AA+ AG QA +M P  ILA QH++ I +  +   + V ++TGN     
Sbjct: 287 SGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKTLE 346

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           R +    +  G  +++IGTHAL QDS+ + KL LVI+DEQHRFGV QR  L  K   P +
Sbjct: 347 RCEIYRELTDGTINVVIGTHALIQDSVIFKKLGLVIIDEQHRFGVGQRQALINKGDQPDI 406

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +     +++ EV  +++  L++G 
Sbjct: 407 LAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQLNQGF 466

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I E +  + ++  E    L   F +  + ++HG+M    K+ +M +F  G  
Sbjct: 467 QIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFAAGEI 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ L  P  + 
Sbjct: 527 DILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-TD 585

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +   R+ ++ +T DGF +AEEDLK R EG++ G  QSG+P+F +     + + L +A+K+
Sbjct: 586 SGKARMKIIASTNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVAQKE 645

Query: 663 AKHILTQDPDLTSVRGQSIRILL 685
           A+ ++  DPDL     ++++ +L
Sbjct: 646 ARALVAADPDLLDPGHKALKQVL 668


>gi|73666667|ref|YP_302683.1| DEAD/DEAH box helicase:helicase, C- terminal:TypeIII restriction
           enzyme, res subunit [Ehrlichia canis str. Jake]
 gi|72393808|gb|AAZ68085.1| DEAD/DEAH box helicase:Helicase, C- terminal:TypeIII restriction
           enzyme, res subunit [Ehrlichia canis str. Jake]
          Length = 678

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 269/684 (39%), Positives = 408/684 (59%), Gaps = 18/684 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +F+ +    GV K     L K+         + IDLLF+ P ++IDR     +SE +  +
Sbjct: 6   IFSSIYMLPGVNKVVGNLLKKL-----CGGDKIIDLLFHIPQNYIDRR--TGLSEEAVGK 58

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           IVT  G +  H     +++  YKI+L+   GE++L+FF+   + LK+V   G +  ++G 
Sbjct: 59  IVTFIGTVKSHGFIGGRRKAQYKIVLDTCIGEVSLVFFHYSVKYLKSVLKVGSECVISGT 118

Query: 129 IKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           + +    + + HP YI  +  +  +  +IE VY L  G++     K++  ++  LP  PE
Sbjct: 119 LIRFFECLQITHPDYIITDVGKFHDISIIEPVYPLIKGVTSKRISKLVKLSIGLLPDFPE 178

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
           WI++ LL+   + S  E+   IH+P+     E  S  + RLAYDELL+ QI++ ++RK F
Sbjct: 179 WIDERLLRDNQWDSWKESLIKIHHPKT---LETVSLHKMRLAYDELLSHQISMKMVRK-F 234

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             + G+ I  +      IL  +PF  T  QE  I  I +  +  +RM+++L GDVGSGKT
Sbjct: 235 DCKQGVSIISKRIYHDDILNKLPFKLTAGQEEVISQITESQALNSRMVKLLIGDVGSGKT 294

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VAL A+   +E  GQ   MAP  ILA+QHY +I+       + VE++T  + +      
Sbjct: 295 VVALFAILNVIENEGQVAFMAPTEILAEQHYRWIQGILSGIPVSVELLTSKVRKKQ--DI 352

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             ++  G+  +++GTHALFQD + +  L L+I+DEQ RFGV QR+KL  K+    VL MT
Sbjct: 353 KRKLQLGECKVVVGTHALFQDGVDFNNLNLIIIDEQQRFGVLQRMKLINKSNLADVLFMT 412

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL     GDID  ++ +KP  R PI T II I ++ EV+ +L+  L +G KAYW
Sbjct: 413 ATPIPRTLEQVVYGDIDCLRLEDKPHNRLPIHTSIINIEKLYEVVTKLQFALRDGNKAYW 472

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           ICP IE+ +  +  +  +RF SL E F   + ++H R+S ++++ VM SF +GT KLL+A
Sbjct: 473 ICPYIEDSELVDIAAAEKRFFSLKEVFGQEVGLVHSRLSKVERDDVMMSFYHGTIKLLVA 532

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG+DV DA+IIIIENAE FGL+QLHQLRGRVGR ++ S C+LL+   +SK +Y +
Sbjct: 533 TTVIEVGVDVPDATIIIIENAEQFGLSQLHQLRGRVGRSDKASFCVLLHGSMVSKVAYKK 592

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L +L+ ++DGF IAE+DL  R  G++LG+KQSG+  F  A      +L+ IA + A+ IL
Sbjct: 593 LCILRKSQDGFYIAEQDLLLRGSGDVLGVKQSGLSNFKFADIYSDQNLISIATEQAQEIL 652

Query: 668 TQDPDLTSVRGQSIRILLYLYQYN 691
             +  L      ++  LL ++ Y+
Sbjct: 653 NANTKL----NDNLAQLLCMFGYD 672


>gi|116492606|ref|YP_804341.1| ATP-dependent DNA helicase RecG [Pediococcus pentosaceus ATCC
           25745]
 gi|116102756|gb|ABJ67899.1| ATP-dependent DNA helicase RecG [Pediococcus pentosaceus ATCC
           25745]
          Length = 675

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 220/685 (32%), Positives = 374/685 (54%), Gaps = 26/685 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   +    GVG K    L+++        +   DL+ Y+P  + D   +     + 
Sbjct: 1   MKSLTDSVQVLPGVGPKRVQALAEL------GISTIEDLITYYPFRYEDLAAKEP-QNVV 53

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           +++ VT  G ++   +     R+  ++      G   + + FF +    +KN      +I
Sbjct: 54  DQQKVTFQGVVATQPTVARFGRQKVRVNFRLLIGNESVMVTFFNQ--PWIKNQINADEEI 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL- 182
            V GK    +  +       I    ++ N   ++ VY     +     +++  +A+++  
Sbjct: 112 AVYGKWDANRRSLTG-----IKIIDEEAN---LQPVYPANKHIRQATIQQLATDAINQYQ 163

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + + I ++L+ K            +H P    D + T  AR    ++E L  Q+ L L
Sbjct: 164 EQIQDVIPEELITKYRLLHRLAMVQALHFP---ADDQKTRDARRTAMFEEFLTFQMGLQL 220

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           ++ + + E G  I  + ++ ++ ++ +PF  T +Q+    +IL ++     M R+LQGDV
Sbjct: 221 VKSRERIENGTAIKYQIQLVREFIQQLPFELTDAQKRVTNEILANLKSPTHMNRLLQGDV 280

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA IAM A + AG QA +MAP  ILA+QH   + ++ +   + + ++ G + + 
Sbjct: 281 GSGKTVVAAIAMYATLTAGMQATLMAPTEILAEQHANNLSRFFEKLDVKIALLVGGIRKK 340

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R + L  I +G+  I++GTHA+ Q+ +Q+  L L I+DEQHRFGV QR  L +K  AP 
Sbjct: 341 IRDEMLAEIKNGEIDIVVGTHAIIQEDVQFKNLGLGIIDEQHRFGVHQRQLLREKGAAPD 400

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +     ++V+  +    + G
Sbjct: 401 ILAMTATPIPRTLAITTYGDMDVSIIDQAPAGRKPIITKWVKRGEWEKVLAFMTKEFANG 460

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540
           ++A+ + P IEE +  + ++ +E +  L E F     IAI+HG+M    K+ +M  FK G
Sbjct: 461 RQAFIVTPLIEESEAMDLQNAMELYQELCEFFGEKYPIAILHGKMDGAQKDQIMADFKEG 520

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               L++TTVIEVG+DV +A++++I++A+ FGLAQLHQLRGRVGRG+  + CIL+  P  
Sbjct: 521 KYMGLVSTTVIEVGVDVPNATLMVIQDADRFGLAQLHQLRGRVGRGQYQAYCILVADPK- 579

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    R+ ++ +T DGF I+E DLK R +G++ G +QSG+P+F +  P +    L+ A+
Sbjct: 580 NEVGKQRMQIMVDTNDGFEISEADLKMRGQGDLFGKQQSGVPEFKVGDPVVDLGALQTAQ 639

Query: 661 KDAKHILTQDPDLTSVRGQSIRILL 685
            DA  I++Q       R Q++R+ L
Sbjct: 640 IDAAKIVSQPAWDQDPRYQNLRLYL 664


>gi|312869882|ref|ZP_07730021.1| ATP-dependent DNA helicase RecG [Lactobacillus oris PB013-T2-3]
 gi|311094467|gb|EFQ52772.1| ATP-dependent DNA helicase RecG [Lactobacillus oris PB013-T2-3]
          Length = 678

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 230/667 (34%), Positives = 355/667 (53%), Gaps = 22/667 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P+   +GVG K +  L+ +            DLL Y+P+ + D      +  + 
Sbjct: 1   MKSLQDPVVALKGVGPKRAADLATL------GIDTVEDLLTYYPNRYDDVT-PADLENVQ 53

Query: 66  EERIVTITGYISQHSSFQ--LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           + + +T  G +           +R      L  G   I + FF +    L      G+ +
Sbjct: 54  DRQRITTQGTVVSEPLLSHFGYRRSRLSFRLQVGPRVIMVTFFNQ--AYLAKRVALGQTV 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           TV GK    + ++        F ++ D       AVYS+   +     + +I +A     
Sbjct: 112 TVMGKWDAQRAQVTAN----KFLSAGDQEQADSGAVYSVNKHIRQATLRGLIKQAFDEYQ 167

Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            V+P  +   L Q             +H P           AR   AY+E    Q+ L  
Sbjct: 168 NVIPTLLPASLRQHYRLLDRRTMIKALHFPENVG---QAKAARRTAAYEEFFLFQLRLQA 224

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  +   G  I       ++ +  I F  T +Q+  + +I +D+ +  +M R+LQGDV
Sbjct: 225 IRQARRHADGDRILYRNDELKEFIAGIGFELTDAQKRVVNEICRDLREPYQMNRLLQGDV 284

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA IA+ A + AG QA +MAP  ILA QH E + +    T + V ++TG++   
Sbjct: 285 GSGKTIVAAIAIYATITAGYQAALMAPTEILAAQHAEKLSRVFAGTHVHVGLLTGSLTAK 344

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
             R+    I  G+ ++IIGTHAL QD ++Y  L LVI DEQHRFGV QR  L +K   P 
Sbjct: 345 QHRELTGAIKRGEINLIIGTHALIQDDVEYANLGLVITDEQHRFGVNQRQLLREKGAHPD 404

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T  + +++  E +  L+  L+ G
Sbjct: 405 VLAMTATPIPRTLAITTYGEMDVSVIDELPAGRKAIETRWLKVDQQSEALHFLRDQLATG 464

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNG 540
            +AY + P IEE +  + ++  + +N L E+F     + ++HGRMS  +KE  M  F+ G
Sbjct: 465 AQAYIVSPLIEESEALDVQNATDLYNELAEYFQPHYQVGLLHGRMSAEEKEQAMHKFQRG 524

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LL++TTVIEVG+D  +A++++I NA+ FGLAQLHQLRGRVGRG+  S C+LL  P  
Sbjct: 525 EYQLLVSTTVIEVGVDNPNATVMLIYNADRFGLAQLHQLRGRVGRGDRQSYCLLLADPK- 583

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           + +   R+  +  T DGF++A+ D++ R  G++LG KQSGMP+F +  P     +L++AR
Sbjct: 584 TDDGKQRMKTMVETNDGFVVAQRDMELRGSGDVLGSKQSGMPEFKVGDPVGDLKMLQVAR 643

Query: 661 KDAKHIL 667
           +DA  +L
Sbjct: 644 QDAADLL 650


>gi|332685789|ref|YP_004455563.1| ATP-dependent DNA helicase RecG [Melissococcus plutonius ATCC
           35311]
 gi|332369798|dbj|BAK20754.1| ATP-dependent DNA helicase RecG [Melissococcus plutonius ATCC
           35311]
          Length = 679

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 225/688 (32%), Positives = 369/688 (53%), Gaps = 23/688 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++    +G K +  L  +            DLL Y+P  + D     ++ EI ++  VT+
Sbjct: 7   ITKIPKIGSKRAENLQAL------GIYTVEDLLTYYPFRYEDIQE-KELDEIQDQEKVTL 59

Query: 73  TGYISQHSSFQ--LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            G++           K+      +      I + FF +    LK       +I + GK  
Sbjct: 60  KGFVVSEPIVTHYGYKKNRLVFRIMQEHAVINVSFFNQS--FLKEKVHLSEEIAIYGKWD 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189
             +  +           S+D        +Y +   +      ++I  A       + E +
Sbjct: 118 AKRKSLNG----IKILASKDGKTEDFSPIYHVNKKIHQSTLVQLIQTAFDLYGEAIEETL 173

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK- 248
              LL+K    S  EA   +H P    +      A+ R+ ++E L  Q+ +  ++KQ K 
Sbjct: 174 PNYLLKKYHLLSRKEAMFSMHFPNLPSE---NYQAKRRIVFEEFLIFQLQIQGLKKQEKA 230

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           ++ GI I+ + K  ++  +++PF  T++Q+    +I +D+   N M R+LQGDVGSGKT+
Sbjct: 231 EQNGISIHYDIKRLKQFTKSLPFQLTEAQKKVTNEICRDLLSANHMQRLLQGDVGSGKTI 290

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA I + A V AG Q  +M P  ILAQQH E  +K     ++ + ++T +     RR+ L
Sbjct: 291 VAAIVLYAVVTAGFQGALMVPTEILAQQHMESFQKLYNPLEVRIALLTSSTKLKERREIL 350

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E++ +G   IIIGTHAL Q+ + +++L LVI DEQHRFGV QR  L +K   P VL MTA
Sbjct: 351 EQLRNGAIDIIIGTHALIQEDVVFHQLGLVITDEQHRFGVNQRKILREKGMRPDVLFMTA 410

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I E PAGR+P++T  +   ++D V+E  K  L    + Y I
Sbjct: 411 TPIPRTLAITAFGEMDVSSIDEMPAGRQPVETRWVRSTKLDSVLEWAKRELVNNHQTYVI 470

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE +  + ++ +E +  L   F     + ++HG+M +  KE +M  FKN   ++L+
Sbjct: 471 CPLIEESEALDAKNALEIYEYLSNFFNDEYKVGLLHGKMKNTQKEEIMQEFKNNQLQILV 530

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG E + CIL+  P  ++    
Sbjct: 531 STTVIEVGVNVPNATLMLIIDADRFGLAQLHQLRGRVGRGTEAAYCILIADPK-NELGTE 589

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+ ++  T +GF ++E+DL  R  GE+ G +QSG+P+F++       ++LEIA+++A  I
Sbjct: 590 RMKIMTETTNGFELSEKDLTLRGSGEVFGDRQSGVPQFIVGDIVNDFNILEIAQQEAAQI 649

Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEAF 694
             Q     SV  +++   + +   ++ F
Sbjct: 650 WHQKSWWCSVEFKNLASKVNVVGRDDQF 677


>gi|290579830|ref|YP_003484222.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025]
 gi|254996729|dbj|BAH87330.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025]
          Length = 671

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 237/667 (35%), Positives = 369/667 (55%), Gaps = 29/667 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + L+  +G+G K +    ++            DLL Y+P  + D      + ++ +  
Sbjct: 3   LQSSLAVLKGLGPKSAEKFHRL------GIYTIEDLLLYYPFRYEDF-KAKSVLDLLDGE 55

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              +TG +   ++ Q    KR      +      I + FF +    L++     + I + 
Sbjct: 56  KAVVTGKVVTPANVQYYGFKRNRLSFKIKQDEAVIAVSFFNQ--PYLQDKVELDQDIAIF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPV 184
           GK  + K+ +  +       +        ++ VY +  G+S     K I  A     L  
Sbjct: 114 GKWDQKKSALTGMKILAQVTDD-------MQPVYHVAQGISQSALIKAIQSAFEAGYLRF 166

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + LL K        A   +H P   KD E    A  R+ ++EL   Q+ L +++
Sbjct: 167 LSENLPQVLLNKYRLLDRQTATRAMHFP---KDLEEYKQALRRIKFEELFYFQLNLQVLK 223

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
              K E   + I  +       +  +PF+ T +Q+ ++ +IL DM     M R+LQGDVG
Sbjct: 224 ANNKSESNGLLITYDHDQVAAKIAALPFALTNAQKRSLDEILADMKSGAHMNRLLQGDVG 283

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A +AM AA  AG Q+ +M P  ILA+QHYE ++      ++ + ++T  M  A 
Sbjct: 284 SGKTVIASLAMYAAYSAGLQSALMVPTEILAEQHYESLRTLF--PELSIALLTSGMKAAV 341

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR AL  IA G   +I+GTHAL Q+ + Y+KL LVI DEQHRFGV+QR    +K   P V
Sbjct: 342 RRSALAAIADGSVDMIVGTHALIQEGVDYHKLGLVITDEQHRFGVKQRRLFREKGENPDV 401

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ G++D+S I E PA RKPI T  +   ++D+V+  +K  L + +
Sbjct: 402 LMMTATPIPRTLAITAFGEMDVSLIDELPASRKPIVTRWVKHEQLDKVLPWVKEQLKKKE 461

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y I P IEE +  + ++ V     L  +F  +++IA++HGRM + +KE++M +FK G+
Sbjct: 462 QVYVISPLIEESETLDLKNAVALEEDLKAYFASSANIALMHGRMKNDEKEAIMQAFKKGS 521

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG++V +A+I+II +A+ FGL+QLHQLRGRVGRGE+ S  IL+ +P  +
Sbjct: 522 IDILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLRGRVGRGEKQSYTILVANPK-T 580

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                R+ ++  T DGF++AEEDLK R  GEI G++QSG+P+F +A       +LE ARK
Sbjct: 581 DTGKNRMRIMTKTTDGFVLAEEDLKMRGSGEIFGVRQSGIPEFQVADIVEDYPILEEARK 640

Query: 662 DAKHILT 668
            A  I+ 
Sbjct: 641 VASQIVA 647


>gi|113474931|ref|YP_720992.1| ATP-dependent DNA helicase RecG [Trichodesmium erythraeum IMS101]
 gi|110165979|gb|ABG50519.1| ATP-dependent DNA helicase RecG [Trichodesmium erythraeum IMS101]
          Length = 827

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 247/687 (35%), Positives = 390/687 (56%), Gaps = 29/687 (4%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L   L   + +G K S  LS +        +   DLL+Y+P   ID   +  I  +   
Sbjct: 129 ELEQLLKDVKSIGIKNSDRLSTL------GLSTVRDLLYYYPRDHIDYARQVNIRNLEAG 182

Query: 68  RIVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEM--------LKNV 116
             VTI G I + + F   K +   I    L D TG+I +  F+              K  
Sbjct: 183 ETVTIIGKIKRFNCFSSPKNKKLTILELTLTDSTGQIKISRFFAGPRFSNKGWQMMQKKF 242

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ-----DVNFPLIEAVYSLPTGLSVDLF 171
           +  G  +  +G +K+ K    + +P     +S+      +    +  VY L  G+  D+ 
Sbjct: 243 YPVGATVAASGLVKETKYGKNLDNPEIEVLDSEGSEIESIKIGRLVPVYPLTEGVEADVV 302

Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
           ++ I + L +     E + +  L +     +  A   IH P    D +  + AR RL +D
Sbjct: 303 RRAIFKILPKAENFSETLPEIFLNQYQLIDLKNAIKNIHFP---IDRDCLAAARRRLVFD 359

Query: 232 ELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           E    Q+ LL  R+ Q K EIG+ + V GK+ +K  + +PF  T +Q+  + +IL+D+ +
Sbjct: 360 EFFYLQLGLLKRRQLQKKTEIGVALPVTGKLIKKFYKLLPFQLTNAQKRVVNEILRDLQK 419

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              M R++QGDVG+GKT+VA++A+ AAV+ G QA +MAP  +LA+QHY+ +  +     +
Sbjct: 420 PEPMKRLVQGDVGAGKTVVAVVAILAAVQVGYQAALMAPTEVLAEQHYDKLVTWFNLLHL 479

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            VE++TG+   A RR+   ++  G+  I++GTHAL QD++ ++KL LV++DEQHRFGV Q
Sbjct: 480 PVELLTGSTKIAKRREIYSQLETGELPILVGTHALIQDTVNFHKLGLVVIDEQHRFGVHQ 539

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           R KL QK  +PH L MTATPIPRTL LT  GD+D+S+I E P GR+PI+T  +   +  +
Sbjct: 540 RAKLQQKGESPHFLAMTATPIPRTLALTLHGDLDVSQIDELPPGRQPIQTTNLTGRQRKK 599

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDI 528
             + ++  + +G++ Y + P +EE ++ + +S +E    L E       I ++HGRMS  
Sbjct: 600 AYDLIRREIVQGRQVYVVLPLVEESEKLDVKSAIEEHQKLAEKIFPEFQIGLLHGRMSSA 659

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +K+ V+ +F+N   ++L++TTV+EVG+DV +A++++IENAE FGL+QLHQLRGRVGRG  
Sbjct: 660 EKDQVISTFRNNQTQILVSTTVVEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGVH 719

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            S C+L+     S ++  RL VL+ ++DGF IAE D++ R  G++LG KQSG+P F +A 
Sbjct: 720 HSYCLLMRGAG-STDATERLKVLEQSQDGFFIAEMDMRLRGPGQVLGTKQSGLPDFALAS 778

Query: 649 PELHDSLLEIARKDAKHILTQDPDLTS 675
                 +LE+AR  A  ++ +D  L S
Sbjct: 779 LVEDQEVLELARGAALQVMEKDESLNS 805


>gi|261393122|emb|CAX50727.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis 8013]
          Length = 680

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 238/665 (35%), Positives = 360/665 (54%), Gaps = 16/665 (2%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
             L K+      N     DL+ + P  + D  +   I +        + G +  H     
Sbjct: 18  KKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVTF 70

Query: 85  QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
           + R+   + + D +G +  L F       +     G++I   G+IK       M+HP   
Sbjct: 71  KPRKQLIVQIADDSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKIR 130

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
                 +    +  VY    GL+    ++II  AL   P L + +   LL +   P +AE
Sbjct: 131 DAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPHLAE 188

Query: 205 AFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260
           +  ++H P  +       + T PA +RL +DELLA Q+++ L R++        +  +G 
Sbjct: 189 SLRLLHLPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAALGGDGT 248

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           + Q + + +PF+ T +QE  + +I +DM+Q   M R+LQGDVGSGKT+VA ++   A+E+
Sbjct: 249 LTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIES 308

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I +
Sbjct: 309 GAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIAV 368

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++  
Sbjct: 369 GTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSFF 428

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D+D+S I + P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +    
Sbjct: 429 ADLDVSVIDKLPPGRTPIKTRLVNNVRRTEVEGFVLGTCRKGRQAYWVCPLIEESETLQL 488

Query: 501 RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEVG+DV +
Sbjct: 489 QTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVPN 548

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PLS+ +  RL V+    DGF 
Sbjct: 549 AALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFE 608

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
           IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V   
Sbjct: 609 IARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEI--VEAH 666

Query: 680 SIRIL 684
             R L
Sbjct: 667 LARWL 671


>gi|269468391|gb|EEZ80056.1| recG-like helicase [uncultured SUP05 cluster bacterium]
          Length = 688

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 244/674 (36%), Positives = 375/674 (55%), Gaps = 17/674 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   + +  G+G K    L+ I             LLF+ P  + ++    K+++  
Sbjct: 1   MYELSDSIISINGLGPKAQEKLNAI------GIYNLEHLLFHLPHRYQNKTKITKLNQAQ 54

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLND-GTGEITLLFFYRKTEMLKNVFFEGRKIT 124
               + +   I +       ++R     L+D     + L FF+      K     G  I 
Sbjct: 55  VGDEILVELTIDRTEEVPT-RQRQLLCYLSDNDNRTLLLRFFHFNQ-YQKQNLTRGETIQ 112

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             G++K  ++ + M HP Y   +    N     +  +Y L   +     KK I  AL  L
Sbjct: 113 CFGEMKIGRDGLEMHHPEYRLISKGQTNLLEKTLSPIYPLTANIHQAQLKKWIDIALETL 172

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQI 238
                    + L K S P++ +A N +H+P+  ++ +        +++RL  +EL A Q+
Sbjct: 173 QKSDLIDNFENLSKNSMPTLKQALNTLHHPQINENIDQIADFKHISQQRLIIEELCAHQL 232

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +LL ++ + K +I     ++ +++ ++L ++ F  T +Q  +I +I  D+S  + MLR+L
Sbjct: 233 SLLKLKNERKHKISNIFELKTQLSDQLLNDLGFKLTNAQRRSIDEINTDISSPHPMLRLL 292

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA+ A   AVE   QA IMAP  ILA QH +    Y     I V  +TG+
Sbjct: 293 QGDVGSGKTIVAVFACLQAVENSFQAAIMAPTEILAAQHLQGFSNYLAPLGIDVAFLTGS 352

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              + R + L +I  GQA +IIGTHALFQ+++ + KL LV++DEQH+FGV QRL L QKA
Sbjct: 353 QNTSQRAEQLNKIKSGQAQVIIGTHALFQEAVTFNKLGLVVIDEQHKFGVHQRLSLAQKA 412

Query: 419 TA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPR+L +++  D+D S I E P GRKP+KT+ I  +R +EVI+++K 
Sbjct: 413 HNTPHQLVMTATPIPRSLTMSAYADLDSSIIDELPPGRKPVKTIAISADRKNEVIKKIKQ 472

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
           V ++  + YW+C  IEE +     S +   + L E+  + S+ +IHG+M+  +K  +M  
Sbjct: 473 VCNDNNQVYWVCTLIEESEVLRAESAINTHHYLQENLPNLSVVLIHGKMNKDEKSEIMRQ 532

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F      +L+ATTVIEVG++V +AS+++IEN+E  GLAQLHQLRGRVGRG + S CIL+Y
Sbjct: 533 FSANKIDVLVATTVIEVGVNVPNASLMVIENSERLGLAQLHQLRGRVGRGADASICILMY 592

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLS N+  RL +L+ T DGF IA++DL+ R  GEILG +Q+G+    IA       L+
Sbjct: 593 QTPLSANATERLDILRQTNDGFAIAQKDLELRGPGEILGTQQTGIADMKIANIVRDGYLM 652

Query: 657 EIARKDAKHILTQD 670
              R  ++H L  D
Sbjct: 653 NQVRYYSEHFLQLD 666


>gi|258645745|ref|ZP_05733214.1| ATP-dependent DNA helicase RecG [Dialister invisus DSM 15470]
 gi|260403114|gb|EEW96661.1| ATP-dependent DNA helicase RecG [Dialister invisus DSM 15470]
          Length = 697

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 220/670 (32%), Positives = 367/670 (54%), Gaps = 18/670 (2%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           F+N L   ++  +GVG +    L ++            DL+ Y+P  + D      ++++
Sbjct: 19  FMN-LSDAVTVVKGVGMRMKEKLERL------GIKTVEDLISYYPRRYEDWTRITPMADL 71

Query: 65  SEERIVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           S E    + G + +      ++      + L DGTG + L++F +     K  F  G  I
Sbjct: 72  SYEMETAVYGTVVEIREVHPRRNLSILTVTLVDGTGAVNLVYFNQ--PWKKEQFAYGSNI 129

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVN-FPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
              GKI+    +  + +       +++++ F  +  VY L  G+     + +I  A+   
Sbjct: 130 LAYGKIEYNYRKWQISNADTEAVAAEELHAFKKLVPVYPLTEGIRASQMRAMIRFAIDHA 189

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E +  D+L ++       A   +H+P     +E    AR R A++EL   Q  + L
Sbjct: 190 EGIRENLPADVLVREHLMGRMAAIRGMHDP---AGWEEQRAARRRTAFEELFFMQAGIQL 246

Query: 243 MRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +RK+ +   +GI     G +  ++++  PF+ T+ Q+S  +DI   M     M R++QGD
Sbjct: 247 LRKRRETDNVGIKCMPSGNLVHEVMKKFPFALTEGQKSVFRDIEDSMEGIVPMQRLVQGD 306

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT +A++A+   VE G Q  +MAP  +LA QH++  ++  +   +    ++G+   
Sbjct: 307 VGSGKTAIAILALTKIVENGYQGALMAPTEVLAAQHFKTFQQVFKGMPVKTAYLSGHTKA 366

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R++ LE++  G  HI+IGTHAL ++++ +  L LVI DEQHRFGV+QR  L  K  +P
Sbjct: 367 AERKEILEQLKDGSIHILIGTHALIEENVVFSALGLVITDEQHRFGVKQRQALESKGKSP 426

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           HVL+MTATPIPRT+ L+  GD+D+S I   P GR P+KT ++  + +  +   +K  +  
Sbjct: 427 HVLIMTATPIPRTMALSVYGDLDVSFIKGMPPGRHPVKTYVVGSHMLQRIFRFMKKEMES 486

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKN 539
           G +AY +CP +E+ ++ +  + V  + +L +H      + ++HGRM + +KE VM+ F+ 
Sbjct: 487 GHQAYVVCPLVEQSEKQDLAAAVSVYENLRDHVFPQFGVGLVHGRMKNAEKEQVMEDFRK 546

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  KLL+AT+VIEVG++V DA+++ +  A+ FGL+QLHQLRGRVGRG+E + C+L Y   
Sbjct: 547 GKFKLLVATSVIEVGVNVPDATVMFVYGADRFGLSQLHQLRGRVGRGKEQAYCVL-YTDN 605

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++ +  R+ ++    DG L+AE+DL  R  GE  G  Q GMP    A       LLE+A
Sbjct: 606 QNETTQLRMKLMCEIRDGALLAEKDLLLRGAGEFFGYHQHGMPDLKAADIVRDLPLLELA 665

Query: 660 RKDAKHILTQ 669
           + DAK  + +
Sbjct: 666 KHDAKEAVDK 675


>gi|134280484|ref|ZP_01767195.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 305]
 gi|134248491|gb|EBA48574.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 305]
          Length = 902

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 253/696 (36%), Positives = 379/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   S 
Sbjct: 218 KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-SE 270

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 271 IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 329

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 330 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 388

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 389 LDVPPLADAVRMLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 448

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +    +      + ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT
Sbjct: 449 PAMPRRARDDGAALSARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKT 508

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 509 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAA 568

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           LE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 569 LEAAALGTAQLVIGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAG 628

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R++  
Sbjct: 629 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREA 688

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F
Sbjct: 689 ALAGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAF 748

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 749 SRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYS 808

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 809 GPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIE 868

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   P++ +      R L    QY +A
Sbjct: 869 PARDAAARLIAAHPEVVAQ--HLARWLGVREQYLKA 902


>gi|310642729|ref|YP_003947487.1| ATP-dependent DNA helicase recg [Paenibacillus polymyxa SC2]
 gi|309247679|gb|ADO57246.1| ATP-dependent DNA helicase RecG [Paenibacillus polymyxa SC2]
          Length = 682

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 232/682 (34%), Positives = 363/682 (53%), Gaps = 19/682 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GV       L K         +   D+L Y+P  + D   R  +SE+ +   +T
Sbjct: 8   PLKQIHGV-----SAL-KEGELHAFGISNVQDMLEYYPFRYEDYRLR-SLSEVKDGDKIT 60

Query: 72  ITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           +   I      Q   R+      L       T  +F R    LK+    GR+I VTGK  
Sbjct: 61  VQAKIMGIPVLQRYGRKSRLTCKLMAEDWMFTATWFNR--HFLKDQLTSGREIVVTGKWD 118

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189
             +  + M      F +        I+ VYS+   ++    +K + + L +   ++PE +
Sbjct: 119 LKR--MQMTVADSEFPDKGVARSGTIQPVYSIGGKITQSWMRKTMNQTLQQFGEMIPEIL 176

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              L++K S     +A   IH P+  ++ +     R R+ Y+EL   Q+ +   R   + 
Sbjct: 177 PDLLVRKYSMMPRKQAIAGIHQPQDNREGQEA---RRRMVYEELFLFQLKMQAFRALNRG 233

Query: 250 EIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
               +   V+    ++ +R +PF  T +Q+    +IL D+     M R+LQGDVGSGKT+
Sbjct: 234 RADGVVHTVDNATIREFVRALPFELTDAQKKVELEILHDLRSPYCMNRLLQGDVGSGKTV 293

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA I + A V +G Q  +M P  ILA+QH   + K  +   I V ++TG+     R++ L
Sbjct: 294 VAAIGLFATVRSGFQGALMVPTEILAEQHMRSLHKLFEPFGISVGLLTGSTTGKKRKELL 353

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             +  G   I++GTHAL Q+ + + +L LV+ DEQHRFGV QR  L +K   P VL MTA
Sbjct: 354 AALQMGLLDIVVGTHALIQEDVYFRQLGLVVTDEQHRFGVNQRSVLRRKGYNPDVLTMTA 413

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ GD+D+S I+E+P GR PI T  +    +D V+  +   + +G++AY I
Sbjct: 414 TPIPRTLAITAFGDMDVSTISERPKGRIPISTYWVKHELMDRVLGFISREVDQGRQAYLI 473

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           CP IEE ++ + ++ ++    + + F    + ++HGRM+  +KE VM SF     +LL++
Sbjct: 474 CPLIEESEKLDVQNAIDLHIQMQQAFPHYRVGLLHGRMTPAEKEEVMRSFYANEVQLLVS 533

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTV+EVG+DV +A+++II +A+ FGL+QLHQLRGRVGRG   S C+L+  P  S+    R
Sbjct: 534 TTVVEVGVDVPNATLMIIMDADRFGLSQLHQLRGRVGRGAHASYCVLIADPK-SEVGQER 592

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           + V+ +T+DGF +A  DL  R  G+  G KQSG+P+F +A       +LE AR+DA  ++
Sbjct: 593 MKVMTDTDDGFEVARRDLDLRGPGDFFGTKQSGLPEFRLADMVADFEVLEKAREDATDLI 652

Query: 668 TQDPDLTSVRGQSIRILLYLYQ 689
                 TS + +++R  L   Q
Sbjct: 653 KDSSFWTSPQYEALRGYLQKEQ 674


>gi|83595864|gb|ABC25226.1| ATP-dependent DNA helicase [uncultured marine bacterium Ant4D3]
          Length = 685

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 235/665 (35%), Positives = 362/665 (54%), Gaps = 21/665 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++   GVG   +  L K+            DLLF+ P+ + DR     +S +  +    
Sbjct: 2   EVTQLSGVGPALAAKLGKL------GLHTVEDLLFHLPNRYQDRTRLVPLSALKPKTACL 55

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I+  S  Q  +R    + ++     + L F +      K  F  GR I   G I+ 
Sbjct: 56  VEGQITSTS-VQRGRRVSLLVGISHNNATLGLRFMHFHANQAK-SFTAGRNIRCFGDIRP 113

Query: 132 LKNRIIMVHPHYI-FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP----VLP 186
               + MVHP Y+ F +        +  +Y    GLS+    ++I  A  +L     VL 
Sbjct: 114 GPQGLEMVHPEYVMFDDVPPALADQLTPIYPTTDGLSLTRMGQLISLAWFQLEQGKLVLD 173

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLL 242
           E + + L+ +   PS+ E+   +H P   +D        +PA+ RL  +EL+A Q+ L  
Sbjct: 174 ELLPQQLISRYQLPSLEESLKQLHYPTLHQDLNQLQNEVTPAKLRLVLEELIAQQLTLSQ 233

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +KQ ++     + ++  +   +++N+PF  TK+Q+   +++  D+     M+R++QGDV
Sbjct: 234 AKKQSQQLPAPVMVIKEGLEHGLIKNLPFQLTKAQQRVWQEVASDLVTPAPMVRMVQGDV 293

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT++A +A   A++ G Q  ++AP  ILA+QH      +     + V  +TG     
Sbjct: 294 GSGKTVLAALAACRAIDNGCQVAVLAPTEILAEQHLHSFSHWLNPLGVNVVWLTGKQKAQ 353

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP- 421
            +R++L  I  G   +I+GTHALFQD++ Y  L LVI+DEQHRFGV QR  L +KA    
Sbjct: 354 TKRQSLAAITSGDGQVIVGTHALFQDAVHYQHLGLVIIDEQHRFGVAQRHSLVKKAPQGC 413

Query: 422 --HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
             H L+MTATPIPRTL +++ GD+D S I E P GRKPI +V++  NR  +VIER+ +  
Sbjct: 414 GLHQLVMTATPIPRTLAMSAYGDLDHSVIDELPPGRKPINSVLLNNNRRADVIERIHLAC 473

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           S G++ YWICP IE        +       L +   +  + ++HGR++  +K   M  FK
Sbjct: 474 SSGQQVYWICPLIETSDVLQCEAAQATAALLTQQLDNIKVGLVHGRLNGAEKADAMARFK 533

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G  +LL+ATTV+EVG+DV +A++++I+NAE  GLAQLHQLRGRVGRG+  S C+ +Y  
Sbjct: 534 SGDIQLLVATTVVEVGVDVPNANLMVIDNAERLGLAQLHQLRGRVGRGQAQSHCLFMYQA 593

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLSK    RL +L+ + DGF+IAE+DL+ R  GE+LG +Q+G     IA       LL  
Sbjct: 594 PLSKMGRERLDILRQSNDGFVIAEKDLQLRGPGEVLGTRQAGAIGLRIADLMRDAYLLPE 653

Query: 659 ARKDA 663
            +  A
Sbjct: 654 VKHIA 658


>gi|239636294|ref|ZP_04677296.1| ATP-dependent DNA helicase RecG [Staphylococcus warneri L37603]
 gi|239597649|gb|EEQ80144.1| ATP-dependent DNA helicase RecG [Staphylococcus warneri L37603]
          Length = 682

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 218/660 (33%), Positives = 367/660 (55%), Gaps = 18/660 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+  +G+G K    L ++      N     DL+ Y P+ + D      ++E  ++  VT
Sbjct: 12  PLNQIKGIGPKRLAVLQEL------NINTVEDLILYLPTRYEDNTVI-DLNEAEDQSTVT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +     R   K+ ++    +I +   +     LK        +TV GK  +
Sbjct: 65  VQGEVYSSPTVAFFGRNKSKLTVHIMVNQIAVKCVFFNQPYLKKKIELHGTVTVKGKWNR 124

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
            K  I        F+  +++N   +E VY +  G+     +  I ++L+ + V+ EW+  
Sbjct: 125 SKQEINGNR--MFFNQQENLNDTQLEPVYRIKEGIKQKQLRDHIRQSLNDV-VIHEWLSD 181

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKE 250
           +L  K    ++    N +H+P+  +D       R   A+ EL   ++ +  L R +   +
Sbjct: 182 ELRNKYKLETLEFTLNHLHHPQGKQDLLRA---RRTYAFTELFMFELRMQWLNRLEKASD 238

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             I I+ + +  +  + ++PF  T +Q++++ +I +D+    RM R+LQGDVGSGKT+VA
Sbjct: 239 DAIEIDYDIQKVKSFIDSLPFELTDAQKTSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVA 298

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            I M A   AG Q+ +M P  ILA+QH E + +   +T   V ++TG++    RR  LE+
Sbjct: 299 AICMYALKTAGYQSALMVPTEILAEQHAESLIQLFGDTM-NVALLTGSVKGKKRRILLEQ 357

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           + +G    +IGTHAL QD + +  + LVI DEQHRFGV QR KL +K    +VL MTATP
Sbjct: 358 LENGTIDCLIGTHALIQDDVAFDNVGLVITDEQHRFGVNQRQKLREKGAMTNVLFMTATP 417

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL ++  G++D+S I + P GRK I T      + ++V+ ++   L +G++AY ICP
Sbjct: 418 IPRTLAISVFGEMDVSSIKQLPKGRKTIMTSWAKHEQYEQVLTQMTSELKKGRQAYVICP 477

Query: 491 QIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            IE  +   + ++VVE F SL +++    + ++HG++S+ +K+ VM  F      +L++T
Sbjct: 478 LIESSEHLEDVQNVVELFESLQQYYGENKVGLLHGKLSNEEKDEVMHRFSEHEIDILVST 537

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R+
Sbjct: 538 TVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERM 596

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 597 TIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANIVEDYRMLEVARDEAGELIQ 656


>gi|187930023|ref|YP_001900510.1| ATP-dependent DNA helicase RecG [Ralstonia pickettii 12J]
 gi|187726913|gb|ACD28078.1| ATP-dependent DNA helicase RecG [Ralstonia pickettii 12J]
          Length = 715

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 240/674 (35%), Positives = 365/674 (54%), Gaps = 34/674 (5%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE----ERIVTITGYISQH 79
           +  L+K+         R +DL+ + P  + D      I+E +          + G +++ 
Sbjct: 32  ADKLAKL------GLHRDVDLVLHLPMRYEDETTLLTIAEATARANTGWAAQVEGTVTR- 84

Query: 80  SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           +    + RR   + + D +GE+ L F       +K +  EG ++ V G+++       MV
Sbjct: 85  NEVAFRPRRQLVVHIADDSGELVLRFLNFYGSQVKQM-AEGVRLRVRGEVRGGFFGAEMV 143

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQ 195
           HP        +     +  VY    G++    +K I+ AL+R P LPE +   L    L 
Sbjct: 144 HPTVRAVADDEPLPDRLTPVYPSTAGVAQAYLRKAILNALTRTP-LPETLPNSLVTGPLA 202

Query: 196 KKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
                + A+A  ++H P    D     E T PA  R+ +DELL+ Q++L   +   +   
Sbjct: 203 PLKLMTPADAVRLLHQPMPDVDEHSLVERTHPAWLRIKFDELLSQQLSLKRAQAARRMRN 262

Query: 252 GIPINVEGKI--AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
              +   GK     + +  +PF  T +Q    ++I  D++    M R+LQGDVGSGKT++
Sbjct: 263 APILRDSGKDGLLARFMDALPFKLTGAQARVWEEIRADLAHPYPMQRLLQGDVGSGKTVI 322

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A +A   A++AG QA +MAP  +LA+QHY  +  + +   + +  + G++ +  + +A  
Sbjct: 323 AALAACQAIDAGWQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAA 382

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--------- 420
           R+A G A ++IGTHAL QD++ + +L L +VDEQHRFGV QRL L  KA+          
Sbjct: 383 RVAAGTAQLVIGTHALIQDAVTFARLGLAVVDEQHRFGVAQRLALRGKASNGDGPAANVQ 442

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVIER+    
Sbjct: 443 VPHQLMMSATPIPRTLAMTYYADLDVSAIDELPPGRTPIVTRLVNDARRDEVIERIYAAA 502

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            EG++ YW+CP IEE +    ++ VE F +L +      + ++HGR+   +K +VM +F 
Sbjct: 503 REGRQVYWVCPLIEESEALQLQTAVETFETLSQSLQGLKVGLVHGRLPSAEKAAVMSAFA 562

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  
Sbjct: 563 GGDLHVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCVLLYQA 622

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS  +  RL  ++ T DGF IA  DL+ R  GE LG +QSG      A       L+E 
Sbjct: 623 PLSPTAKQRLQTMRETTDGFEIARRDLEIRGPGEFLGARQSGEAMLRFADLNQDAWLVEF 682

Query: 659 ARKDAKHILTQDPD 672
           A+  A  +L + P+
Sbjct: 683 AQGTADEMLARFPE 696


>gi|161525831|ref|YP_001580843.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans ATCC
           17616]
 gi|189349448|ref|YP_001945076.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans ATCC
           17616]
 gi|160343260|gb|ABX16346.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans ATCC
           17616]
 gi|189333470|dbj|BAG42540.1| ATP-dependent DNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 791

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 250/696 (35%), Positives = 376/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      I ++    I    G +   + 
Sbjct: 107 KTADKLAKL------GLTRSIDLVLHLPMRYEDETTLTPIRDLLPGGIAQTEGVVID-NE 159

Query: 82  FQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + + D  GE + L F       +K +   G+++ V G ++     + MVH
Sbjct: 160 VAYRPRRQLVVKIRDDDGEQLVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGMEMVH 218

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P      +      ++  VY    G+S    +K I  AL R P LPE +  ++    L+ 
Sbjct: 219 PAVRVVEADAPLPQVLTPVYPSTAGVSQAYLRKAIENALERTP-LPELLPPEIERDYLKP 277

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P++A+A  I+H+P    D     + + PA  R+ ++ELLA Q++L    ++ +    
Sbjct: 278 LGVPTLADAVRILHHPGVDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAA 337

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +             ++   +PF  T +Q   + +I  D++  + M R+LQGDVGSGKT
Sbjct: 338 PAMPRRTARDTDALTTRLYAALPFRLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKT 397

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 398 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAA 457

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           +E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 458 IEAAALGTAELVIGTHAIIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAQG 517

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR P+ T ++   R DEVI R++  
Sbjct: 518 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPVLTRVVGDARRDEVIARVREA 577

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR+S  DK +VMD+F
Sbjct: 578 ALTGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAF 637

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 638 TRNEVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYS 697

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L++
Sbjct: 698 GPLSIAGRERLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLID 757

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   PD+ +      R L    QY +A
Sbjct: 758 PARDAAARLIAAYPDVVTQ--HLARWLGAREQYLKA 791


>gi|237813724|ref|YP_002898175.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei MSHR346]
 gi|237505267|gb|ACQ97585.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei MSHR346]
          Length = 906

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 252/696 (36%), Positives = 379/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 222 KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 274

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 275 IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 333

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 334 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 392

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 393 LDVPPLADAVRMLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 452

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +    +      + ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT
Sbjct: 453 PAMPRRARDDGAALSARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKT 512

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 513 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAA 572

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           LE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 573 LEAAALGTAQLVIGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAG 632

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R++  
Sbjct: 633 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREA 692

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F
Sbjct: 693 ALAGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAF 752

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 753 SRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYS 812

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 813 GPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIE 872

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   P++ +      R L    QY +A
Sbjct: 873 PARDAAARLIAAHPEVVAQ--HLARWLGAREQYLKA 906


>gi|126452909|ref|YP_001067596.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1106a]
 gi|242314593|ref|ZP_04813609.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1106b]
 gi|126226551|gb|ABN90091.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1106a]
 gi|242137832|gb|EES24234.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 1106b]
          Length = 902

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 252/696 (36%), Positives = 379/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 218 KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 270

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 271 IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 329

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 330 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 388

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 389 LDVPPLADAVRMLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 448

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +    +      + ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT
Sbjct: 449 PAMPRRARDDGAALSARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKT 508

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 509 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAA 568

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           LE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 569 LEAAALGTAQLVIGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAG 628

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R++  
Sbjct: 629 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREA 688

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F
Sbjct: 689 ALAGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAF 748

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 749 SRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYS 808

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 809 GPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIE 868

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   P++ +      R L    QY +A
Sbjct: 869 PARDAAARLIAAHPEVVAQ--HLARWLGAREQYLKA 902


>gi|296116128|ref|ZP_06834746.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977234|gb|EFG83994.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 694

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 264/704 (37%), Positives = 417/704 (59%), Gaps = 19/704 (2%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            L PLFA + T  G+G      +++      A   R IDLLF+ P   +DR YRP+++  
Sbjct: 2   LLAPLFASVGTLPGIGPSVERLIAR-----AARGDRVIDLLFHLPDGLVDRRYRPQLAVA 56

Query: 65  SEERIVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
              R+ T    + +  +    + R+P++I++ DGTG+  L+FF   +           +I
Sbjct: 57  EAGRVCTFHARVVRIIAPENSRGRKPWRIVVGDGTGQAELVFF---SPYQAQRLRVDMQI 113

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V+G +++  +R+ M HP Y+    Q+   PL++ V+ L  GL     +  +  A +R P
Sbjct: 114 CVSGMLERFGDRLSMPHPDYLVMGEQENTIPLLDPVWPLTGGLFPRQLRTALQGAFARFP 173

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF-------EWTSPARERLAYDELLAG 236
            LPEW++ ++++K+ +P+  +A  I+H P    D          +  AR RL+YDELLA 
Sbjct: 174 DLPEWLDPEMVRKRKWPTFEQALRIMHRPSDFPDLMEGERYAAASERARARLSYDELLAM 233

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           QIA+   R   +   G  I   G +    L      PT +Q   +++I +D+   +RM R
Sbjct: 234 QIAMARARIDNRDRPGRSIIGTGALRTVALSRFGHEPTTAQIRVLEEIGRDLRAPHRMTR 293

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVG+GKTLVAL++M  AVEAG QA +MAP  ILA+QH    +K    + + V  ++
Sbjct: 294 LLQGDVGAGKTLVALLSMLCAVEAGHQAAMMAPTEILARQHLATFQKL---SPVPVAFLS 350

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G++    R++ALE I  G A ++IGTHALFQD +++  L LV++DEQHRFGV QR+ L +
Sbjct: 351 GSVKGRARKQALEAIRTGAAPLVIGTHALFQDKVEFADLALVVIDEQHRFGVAQRMMLGE 410

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K     VL+MTATPIPRTL+LT  GD+ +S++  KPAGRKPI+T +  ++ + E++  ++
Sbjct: 411 KGDRTDVLVMTATPIPRTLLLTQWGDMQVSRLDVKPAGRKPIRTSLHALSAMPELVAAVR 470

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             L+ G + +W+CP + E +  +  +   R   L E+F   + + HG+     +E  + +
Sbjct: 471 RALARGAQVFWVCPLVSESEALDIAAAEARHAMLKEYFGDLVGLAHGQQDIAVREEAISA 530

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G  ++L+ATTVIEVG+D+  A++++IE+AE FGLAQLHQLRGRVGRG+  S C+LL+
Sbjct: 531 FAEGRTRILVATTVIEVGVDIPSATVMMIEHAERFGLAQLHQLRGRVGRGQADSFCLLLH 590

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
              L + +  RL++L++TEDGF+IA+ED + R  G++ G +QSG+P F +A     + LL
Sbjct: 591 DGQLGQTARRRLALLRDTEDGFVIADEDFRIRGGGDLAGHRQSGLPDFRMAAGVHVEQLL 650

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             A +DA+ ++         R  +I ILL L+   +A + ++AG
Sbjct: 651 RAAAQDAQRVVDGTAPAVHRRDAAIAILLELFSRTDAQRIMKAG 694


>gi|291550315|emb|CBL26577.1| ATP-dependent DNA helicase RecG [Ruminococcus torques L2-14]
          Length = 686

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 233/683 (34%), Positives = 371/683 (54%), Gaps = 18/683 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           A + T +GVG+K      KI            DL+ Y+P  +        ISE+ E ++ 
Sbjct: 5   AGVGTIKGVGEKTEKLFEKI------GVYTVDDLIHYYPRGYEIFGEPVPISEVEEGKVC 58

Query: 71  TITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           TI G +  +      + R+     L D TG I +++F  +   L+N       + + G++
Sbjct: 59  TICGSVFGRVQVSPGKGRQITTAYLKDLTGTIKVIWF--RMPFLRNTLGRKGAVVLRGRV 116

Query: 130 KKLKNRIIMVHPH-YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
            K ++ ++M HP  Y            ++ VY L  GL+ +   K + +AL ++    ++
Sbjct: 117 VKKRDSLVMEHPEIYDPAVRYQEKINTMQPVYGLTAGLTNNAVIKALRQALEQVREQDDF 176

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +  +  +K  F    ++   +H P      E    AR+R  ++E L   ++L  ++    
Sbjct: 177 LPDEFTKKYHFRPYEQSVREMHFPENK---EAFLAARQRFVFEEFLVFILSLRQIKNTQD 233

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +        +     + LR +P+  T +Q     D+ +DM  +  M R++QGDVGSGKT+
Sbjct: 234 RMKNGFHFEDQPQISEFLRQLPYELTAAQLRVWDDMQKDMKSQYVMSRLVQGDVGSGKTI 293

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRK 366
           VA++ +  A   G Q  +MAP  +LA+QH+E IK   +  QI    E++TG+M    +R+
Sbjct: 294 VAVLGLLFAGLNGYQGALMAPTEVLARQHFENIKDMLEQYQIPLRAELLTGSMKAKEKRE 353

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
           A  RI  G++ IIIGTHAL Q+   Y+ L LV+ DEQHRFGV+QR  L  K   PH+L+M
Sbjct: 354 AYARIESGESSIIIGTHALIQEKAIYHNLALVVTDEQHRFGVKQREMLAGKGNLPHILVM 413

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL +   GD+DIS I E P  R PIK  ++      +  E ++  +++G++ Y
Sbjct: 414 SATPIPRTLGIILYGDLDISVIDELPKNRLPIKNCVVDTGYRPKAYEFIRKQVAQGRQCY 473

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP +EE +     +V++    L E    S  ++ +HG+M + +K+ VM++F     ++
Sbjct: 474 VICPMVEESEAMEAENVIDYCEMLSETLGDSINVSFLHGKMKEKEKDEVMNAFGRNEIQV 533

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVGIDV +A++I+IENAE FGLAQLHQLRGRVGRG+  S CI +     SK +
Sbjct: 534 LVSTTVVEVGIDVPNATVIMIENAERFGLAQLHQLRGRVGRGKYQSYCIFMTASK-SKET 592

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL +L ++ DGF IA EDL+ R  G++ GI+QSG+  F +A       LL+ A ++A 
Sbjct: 593 KERLDILNHSNDGFFIASEDLRLRGPGDLFGIRQSGVLDFKVADVFQDAKLLQNASEEAD 652

Query: 665 HILTQDPDLTSVRGQSIRILLYL 687
            +L  DP L     + ++  L +
Sbjct: 653 RLLLDDPKLEFPEHRRLKEHLRI 675


>gi|126441636|ref|YP_001060336.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 668]
 gi|126221129|gb|ABN84635.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 668]
          Length = 902

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 252/696 (36%), Positives = 380/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 218 KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 270

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 271 IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 329

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 330 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 388

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +  + 
Sbjct: 389 LDVPPLADAVRMLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRVA 448

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +    +      + ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT
Sbjct: 449 PAMPRRARDDGAALSARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKT 508

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 509 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAA 568

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           LE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 569 LEAAALGTAQLVIGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAG 628

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R++  
Sbjct: 629 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREA 688

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F
Sbjct: 689 ALAGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAF 748

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 749 SRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYS 808

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 809 GPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIE 868

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   P++ +      R L    QY +A
Sbjct: 869 PARDAAARLIAAHPEVVAQ--HLARWLGAREQYLKA 902


>gi|167580654|ref|ZP_02373528.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis TXDOH]
          Length = 735

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 255/696 (36%), Positives = 380/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 51  KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 103

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 104 IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 162

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 163 PSVKVVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALTRTP-LPELLPPEVARAYLQP 221

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              PS+A+A  I+H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 222 LDVPSLADAVRILHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 281

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +    +      + ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT
Sbjct: 282 PAMPRRARDDGASLSARLHAALPFTLTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKT 341

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 342 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKDKRAA 401

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           LE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 402 LEAAALGTARLVIGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAG 461

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R++  
Sbjct: 462 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREA 521

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F
Sbjct: 522 ALAGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAF 581

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 582 SRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYS 641

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 642 GPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIE 701

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   PD+ +      R L    QY +A
Sbjct: 702 PARDAAARLIAGHPDVVAQ--HLARWLGAREQYLKA 735


>gi|73662852|ref|YP_301633.1| ATP-dependent DNA helicase RecG [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495367|dbj|BAE18688.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 681

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 215/660 (32%), Positives = 364/660 (55%), Gaps = 19/660 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS  +G+G K    L+++      N     DL+ Y P+ + D      ++E  ++ IVT
Sbjct: 12  PLSQIKGLGPKRLAVLNEL------NIHTVEDLILYLPTRYEDNTVI-DLNEAEDQAIVT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +     R   K+ ++    +I +   +     LK        +TV GK  +
Sbjct: 65  VVGEVYSTPTVAFFGRNKSKLTVHIMVDQIAVKCTFFNQPYLKKKIELHGTVTVKGKWNR 124

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
            K     ++ + +F + Q       E VY +  G+     + +I + L ++  + EW+ +
Sbjct: 125 AK---QEINGNRMFFSQQMDESGQYEPVYRIKEGIKQKPLRDMIRQVLDQV-TIQEWLSE 180

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKE 250
           DL +K    ++ +    +H    A D      AR   A+ EL   ++ +  L R +   +
Sbjct: 181 DLRKKYKLETLEDTIKALHF---ATDKASLLKARRTYAFTELFMFELRMQWLNRLEKTSD 237

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             I ++ +  + +  + ++PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT+VA
Sbjct: 238 EAIDVDYDINLVKHFIDSLPFELTDAQKHSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVA 297

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            I M A   AG Q+ +M P  ILA+QH E +     + ++ V ++TG++    R+  LE+
Sbjct: 298 AICMYALKTAGYQSALMVPTEILAEQHAESLVDLFGD-RMNVALLTGSVKGKKRKLLLEQ 356

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           + + +   IIGTHAL QD +++  + LVI DEQHRFGV QR  L +K    +VL MTATP
Sbjct: 357 LNNNEIDCIIGTHALIQDDVKFNNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATP 416

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL ++  G++D+S I + P GRKPI T        + V+ ++   L +G++AY ICP
Sbjct: 417 IPRTLAISVFGEMDVSSIKQLPKGRKPIITSWSKHEAYESVLNQMTSELKKGRQAYVICP 476

Query: 491 QIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            IE  +   + ++VVE + SL  ++    + ++HG++   +K+ VM  F N    +L++T
Sbjct: 477 LIESSEHLEDVQNVVELYESLQSYYGVEKVGLLHGKLHSDEKDEVMQRFSNHEIDILVST 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E+ S C+L+  P  ++    R+
Sbjct: 537 TVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEQQSYCVLIASPK-TETGIERM 595

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 596 NIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYKMLEVARDEAAELIQ 655


>gi|297530639|ref|YP_003671914.1| ATP-dependent DNA helicase RecG [Geobacillus sp. C56-T3]
 gi|297253891|gb|ADI27337.1| ATP-dependent DNA helicase RecG [Geobacillus sp. C56-T3]
          Length = 682

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 224/684 (32%), Positives = 368/684 (53%), Gaps = 23/684 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            +  P++  +G+G++ +  L+      +       +LL Y P  + D   +  ++ +  E
Sbjct: 4   AMQQPVTAVKGIGEETAAALA------DIGIATVGELLAYAPYRYDDY-EQKDLAVVRHE 56

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLND--GTGEITLLFFYRKTEMLKNVFFEGRKITV 125
             VT+ G +          ++  ++          IT++ F R    LK        +TV
Sbjct: 57  EKVTVEGKVYSAPLLTYYGKKKSRLSFRMLADRYLITVVCFNR--PYLKEKIALNETVTV 114

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PV 184
            GK  + +  I      Y            IE VYS+ + L+V   ++++  A  +    
Sbjct: 115 IGKWDRHRQAINA----YELRFGPAPETTGIEPVYSVRSPLTVKTMRRLMKAAFEQFGEH 170

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           +P+ +   L +        EA   +H PR  ++      AR RL Y+E L  Q+ +  +R
Sbjct: 171 IPDLLPPALRRAYRLVDKQEALRALHFPRTREEL---HQARRRLIYEEFLLYQLKMQALR 227

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +  + E   +  +   +     L  +PF  T +Q   I +IL DM    +M R+LQGDVG
Sbjct: 228 RLMRDERRGVVHSFSEERLSSFLSGLPFVLTNAQRRVIGEILADMRSPRQMNRLLQGDVG 287

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A+ AA  +G Q  +M P  ILA+QH   + +   +T + + ++T ++    
Sbjct: 288 SGKTVVAAVALYAAALSGFQGALMVPTEILAEQHARSLAELFADTDVTIALLTSSVKGKQ 347

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           R+  L  +  G   I++GTHAL Q+ +Q+++L LVI DEQHRFGV+QR  L +K  AP V
Sbjct: 348 RKAVLAELEEGTIDIVVGTHALIQEGVQFHRLGLVITDEQHRFGVEQRRVLREKGHAPDV 407

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T+ GD+D+S + E PAGRK ++T  +  ++   V++ ++  L  G 
Sbjct: 408 LMMTATPIPRTLAITAFGDMDVSVLDEMPAGRKKVETYWVKHHQFSRVLDFIEKELRRGH 467

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP IEE  + + ++ ++  + L  ++     I ++HGR+S  +KE VM +F    
Sbjct: 468 QAYVICPLIEESDKLDVQNAIDVHSQLVHYYRGKYEIGLMHGRLSADEKERVMRAFSENR 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+  S CIL+  P  S
Sbjct: 528 IHVLVSTTVVEVGVNVPNATVMVIYDAERFGLAQLHQLRGRVGRGDAQSYCILIADPK-S 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T DGF++AE+DL+ R  G+  G KQSG+P+F    P     +LE+AR+
Sbjct: 587 EVGKERMRIMTETADGFVLAEKDLELRGPGDFFGTKQSGLPEFRYGDPVHDYRILEVARR 646

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
           DA  +++            +R  L
Sbjct: 647 DAAKLVSSAAFWRDEAYAGLRAEL 670


>gi|241664128|ref|YP_002982488.1| ATP-dependent DNA helicase RecG [Ralstonia pickettii 12D]
 gi|240866155|gb|ACS63816.1| ATP-dependent DNA helicase RecG [Ralstonia pickettii 12D]
          Length = 715

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 239/674 (35%), Positives = 362/674 (53%), Gaps = 34/674 (5%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE----ERIVTITGYISQH 79
           +  L+K+         R +DL+ + P  + D      I+E +          + G +++ 
Sbjct: 32  ADKLAKL------GLHRDVDLVLHLPMRYEDETTLLTIAEATARANTGWAAQVEGTVTR- 84

Query: 80  SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           +    + RR   + + D +GE+ L F       +K +  EG ++ V G+++       MV
Sbjct: 85  NEVAFRPRRQLVVHIADDSGELVLRFLNFYGSQVKQM-AEGVRLRVRGEVRGGFFGAEMV 143

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQ 195
           HP        +     +  VY    G++    +K I+ AL+R P LPE +   L    L 
Sbjct: 144 HPTVRAVAEDEPLPDRLTPVYPSTAGVAQAYLRKAILNALARTP-LPETLPNSLITGPLA 202

Query: 196 KKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
                + A+A  ++H P    D     E T PA  R+ +DELL+ Q++L   +   +   
Sbjct: 203 PLKLMTPADAVRLLHQPSPDVDEHSLVERTHPAWLRIKFDELLSQQLSLKRAQAARRMRN 262

Query: 252 GIPINVEGKI--AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
              +   GK     + +  +PF  T +Q     +I  D++    M R+LQGDVGSGKT++
Sbjct: 263 APILRDSGKDGLLARFMNALPFKLTGAQARVWDEIRADLAHPYPMQRLLQGDVGSGKTVI 322

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A +A   A++AG QA +MAP  +LA+QHY  +  + +   + +  + G++ +  + +A  
Sbjct: 323 AALAACQAIDAGWQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAA 382

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT----------QKAT 419
           R+A G A ++IGTHAL QD++ + +L L +VDEQHRFGV QRL L             A 
Sbjct: 383 RVAAGTAQLVIGTHALIQDAVTFARLGLAVVDEQHRFGVAQRLALRGKASNGDAPAANAQ 442

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVIER+    
Sbjct: 443 VPHQLMMSATPIPRTLAMTYYADLDVSAIDELPPGRTPIVTRLVNDARRDEVIERIYAAA 502

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            EG++ YW+CP IEE +    ++ VE F +L +      + ++HGR+   +K +VM +F 
Sbjct: 503 REGRQVYWVCPLIEESEALQLQTAVETFETLSQSLLGLKVGLVHGRLPSAEKAAVMSAFA 562

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  
Sbjct: 563 GGGLHVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCVLLYQA 622

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS  +  RL  ++ T DGF IA  DL+ R  GE LG +QSG      A       L+E 
Sbjct: 623 PLSPTAKQRLQTMRETTDGFEIARRDLEIRGPGEFLGARQSGEAMLRFADLNHDAWLVEF 682

Query: 659 ARKDAKHILTQDPD 672
           A+  A  +L + P+
Sbjct: 683 AQGAADAMLARFPE 696


>gi|261401307|ref|ZP_05987432.1| ATP-dependent DNA helicase RecG [Neisseria lactamica ATCC 23970]
 gi|269208687|gb|EEZ75142.1| ATP-dependent DNA helicase RecG [Neisseria lactamica ATCC 23970]
          Length = 680

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 238/666 (35%), Positives = 360/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + DG+G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADGSGSVLFLRFIHFYAGHQKQMAVGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
               S  +    +  +Y    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAESSGL-AESLTPIYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLELPHLA 187

Query: 204 EAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H P  +      S    PA +RL +DELLA Q+++ L R++        +   G
Sbjct: 188 ESLRLLHAPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRIGGSAAALRGNG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + R +PF+ T +QE+ + ++  DM+Q + M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 VLTQALRRALPFALTDAQENVLAEVQTDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNTCRKGRQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F +G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGELNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+   L + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAESLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|124023369|ref|YP_001017676.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
           9303]
 gi|123963655|gb|ABM78411.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT
           9303]
          Length = 846

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 241/698 (34%), Positives = 381/698 (54%), Gaps = 33/698 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PLS  +G+G K +  L+ +      +  +      Y+P  ++D     +I  +    
Sbjct: 147 LESPLSEVKGIGPKLAERLAGLGLLLVKDLLQ------YYPRDYVDYSSLRRIQALEAGE 200

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRK-----TEMLK---NVF 117
             TI   + +   F   +     IL   L D TG + +  F+          LK    ++
Sbjct: 201 AATIVATVRRCHGFTSPRNPNLSILELQLQDPTGRLKVRRFFAGRRFSSPAYLKSQSRLY 260

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-----NFPLIEAVYSLPTGLSVDLFK 172
             G  + V+G +K     +    P      S        +   +  VY+L  GL+ D F+
Sbjct: 261 PPGVTVAVSGLVKGGPYGMSFQDPLIEVMESPHSPLRSQSIGRLLPVYALTEGLTADRFR 320

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            ++ + L      PE + +   Q    PS ++A   IH+P      +     R RL +DE
Sbjct: 321 DLVRQVLPLAASWPESLPEPRRQALRLPSRSDALIAIHHPDDQHTLQSA---RRRLVFDE 377

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKI---AQKILRNIPFSPTKSQESAIKDILQDMS 289
            L  Q+ LL  R + +      +   G+      + L  +PF  T +Q+  +++I  D+ 
Sbjct: 378 FLLLQLGLLKRRAELRSCSAPVLQTAGQRDGLVARFLELLPFPLTGAQQRVLREIEADLV 437

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
               M R++QGDVGSGKT+VA+ A+  AVEAG Q   MAP  +LA+QHY  +  +     
Sbjct: 438 LSEPMARLIQGDVGSGKTVVAIAALLTAVEAGWQGAFMAPTEVLAEQHYRTLCCWLPQLH 497

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + VE++TG   +  RR+ L+ + +G   I++GTHAL +D + + +L LV+VDEQHRFGV+
Sbjct: 498 VSVELLTGATTRIRRRQILDDLVNGSLKILVGTHALIEDPVAFSRLGLVVVDEQHRFGVK 557

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI+T +I     D
Sbjct: 558 QRNRLLNKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIQTQMIRGCDRD 617

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSD 527
           +  + ++  +S G++AY + P IE+ ++ + RS V+  + L E   +  ++ ++HGR+S 
Sbjct: 618 QAYQLIRDQVSRGQRAYVVLPLIEDSEKLDLRSAVKVHSHLSEQVFAEFTVGLLHGRLSS 677

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K+ V+ SF  G C++L++TTV+EVG+DV  AS+++I++A+ FGLAQLHQLRGRVGRG 
Sbjct: 678 SEKQGVIQSFAAGECQVLVSTTVVEVGVDVPQASVMVIDHADRFGLAQLHQLRGRVGRGA 737

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C+L+ +   +  +  RL VL  + DGF IAE DL+ R  G++LG KQSG+P   +A
Sbjct: 738 AASHCVLI-NDSTNPLARQRLEVLVRSSDGFEIAEIDLRLRGPGQVLGTKQSGLPDLALA 796

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                 S+LE AR +A+ +L+ DP+LT      ++ LL
Sbjct: 797 SLADDGSVLEEARDEAQRLLSDDPNLTD--HSRLKELL 832


>gi|330814102|ref|YP_004358341.1| ATP-dependent DNA helicase RecG [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487197|gb|AEA81602.1| ATP-dependent DNA helicase RecG [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 687

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 248/693 (35%), Positives = 399/693 (57%), Gaps = 12/693 (1%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+ ++  +GVG   S  LS      +      IDL    P+  IDR + PK+ ++    
Sbjct: 6   LFSSVNKIKGVGPVISKKLS------DKGIENKIDLFLNLPTGAIDRRFCPKLDQLEVGV 59

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I TI     ++S  +  +  P ++   D  G I ++FF  +   ++ +     ++ ++GK
Sbjct: 60  ISTIFVRPIKYSIPRF-RNLPNRVTCKDEYGSIDIIFFNSRESYIRQILPLNEEVVISGK 118

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           +   KN+  M +P YI    ++ +   I A YS   G+S    +KI  E + +L  + EW
Sbjct: 119 VGFYKNKYQMTNPDYIQSIDKEKDITKIMAKYSSVAGISPKTIQKIYKEEIGKLKDIGEW 178

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
             +D L+K ++P+  +A   +HNP    D    S   +RLA+DE+ +  +    ++K+ K
Sbjct: 179 HSQDFLKKMAWPTWYDAIYNLHNPINVSDVNKESKFYKRLAFDEIFSNFLIFSEIKKRIK 238

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K I +   ++     KI   +PF+ TKSQ+ A+K+IL D+S + +MLR+LQGDVGSGKT 
Sbjct: 239 KLIKVSKVIDEDNLLKIKEMLPFTLTKSQQEALKEILTDISSERKMLRVLQGDVGSGKTA 298

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA+IA    V++G Q   + P  +LA+QH+   KK  +N  + V+++T  +  + +    
Sbjct: 299 VAMIAAYLTVKSGYQVAFLCPTELLAKQHFLLFKKVLENENLNVQLLTSKIKGSEQVDTR 358

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427
            +++  +  I++GTH+LFQ+   +  L L+++DEQH+FGVQQR+ L  + +    VLLMT
Sbjct: 359 FQLSQNKVDIVVGTHSLFQEKTTFNNLGLIVIDEQHKFGVQQRINLSLKGSVNTDVLLMT 418

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL+LT+ GD+DIS I EKP     I T+  P  ++D+V+  LK  L E  + YW
Sbjct: 419 ATPIPRTLILTNYGDMDISTINEKPFNNTTINTLAKPAEQMDDVMFFLKKRLDEKDQVYW 478

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           + P IEE ++      V+R+  L +     + ++HG M   +K  +M+ F +G  K++++
Sbjct: 479 VTPLIEESEKLKLTPAVKRYEYLKKKLKVEVGLVHGAMKSEEKNKIMEDFISGKIKVIVS 538

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVGID  +A+ +IIEN E FGL+QLHQLRGRVGRG+  + C+LLY   +  N   R
Sbjct: 539 TTVIEVGIDNQNANTMIIENCERFGLSQLHQLRGRVGRGKVDAHCLLLYSKNIGINGKKR 598

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           + +LK++ DGF I+EEDLK R  G+I+G KQSG   F+IA P  H  L ++A+++ +++ 
Sbjct: 599 IQILKSSLDGFYISEEDLKLRGFGDIIGYKQSGEKDFIIADPAYHSDLFQLAKEEIENLE 658

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            ++  L     Q    LL +++ +     I  G
Sbjct: 659 NKNVKLE----QHFSQLLKIFKKDRVLNIIDTG 687


>gi|217420629|ref|ZP_03452134.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 576]
 gi|217396041|gb|EEC36058.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 576]
          Length = 902

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 253/696 (36%), Positives = 379/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   S 
Sbjct: 218 KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-SE 270

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 271 IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 329

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 330 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 388

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 389 LDVPPLADAVRMLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 448

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +    +      + ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT
Sbjct: 449 PAMPRRARDDGAALSARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKT 508

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 509 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAA 568

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           LE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 569 LEAAALGTAQLVIGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAG 628

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R++  
Sbjct: 629 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREA 688

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F
Sbjct: 689 ALAGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAF 748

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 749 SRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYS 808

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 809 GPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIE 868

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   P++ +      R L    QY +A
Sbjct: 869 PARDAAARLIAAHPEVVAQ--HLARWLGAREQYLKA 902


>gi|121599993|ref|YP_991657.1| ATP-dependent DNA helicase RecG [Burkholderia mallei SAVP1]
 gi|124384498|ref|YP_001027152.1| ATP-dependent DNA helicase RecG [Burkholderia mallei NCTC 10229]
 gi|126451131|ref|YP_001082101.1| ATP-dependent DNA helicase RecG [Burkholderia mallei NCTC 10247]
 gi|121228803|gb|ABM51321.1| ATP-dependent DNA helicase RecG [Burkholderia mallei SAVP1]
 gi|124292518|gb|ABN01787.1| ATP-dependent DNA helicase RecG [Burkholderia mallei NCTC 10229]
 gi|126244001|gb|ABO07094.1| ATP-dependent DNA helicase RecG [Burkholderia mallei NCTC 10247]
          Length = 902

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 252/696 (36%), Positives = 379/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 218 KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 270

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 271 IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 329

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 330 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 388

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 389 LDVPPLADAVRMLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 448

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +    +      + ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT
Sbjct: 449 PAMPRRARDDGAALSARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKT 508

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 509 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAA 568

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           LE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 569 LEAAALGTAQLVIGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAG 628

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R++  
Sbjct: 629 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREA 688

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F
Sbjct: 689 ALAGRQVYWVCPLIEESETLQLQTAVETYETLAVALPELKVGLVHGRLAPAEKAAVMDAF 748

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 749 SRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYS 808

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 809 GPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIE 868

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   P++ +      R L    QY +A
Sbjct: 869 PARDAAARLIAAHPEVVAQ--HLARWLGAREQYLKA 902


>gi|270290362|ref|ZP_06196587.1| ATP-dependent DNA helicase RecG [Pediococcus acidilactici 7_4]
 gi|270281143|gb|EFA26976.1| ATP-dependent DNA helicase RecG [Pediococcus acidilactici 7_4]
          Length = 675

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 217/675 (32%), Positives = 366/675 (54%), Gaps = 27/675 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   +    GVG K +  L ++            DL+ Y+P  + D   +    E++
Sbjct: 1   MKSLTDSVQVLAGVGPKRAQALQEL------GIQTIEDLITYYPFRYEDLAAKKP-QEVA 53

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           +++ VT  G ++   +     R   ++          + + FF +    +K      +++
Sbjct: 54  DQQKVTFQGIVATAPTIARFGRHKVRVNFRLLVENSSVMVTFFNQ--PWIKKQLEANQEV 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182
            + GK    +  +  +    I    Q      +EAVY     +     ++++  AL    
Sbjct: 112 AIYGKWDANRQSLTGIK---IITEEQ-----GMEAVYPANKHIRQATIQQLVEAALNEYA 163

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + + I + L++K            +H P    D + T  AR    ++E L  Q+ L +
Sbjct: 164 EQVQDVIPEALIEKYRLMHRLAMIKALHFP---GDEQITKQARRTAMFEEFLVFQMGLQV 220

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           ++ + + E G  I+ + ++ ++ ++ +PF  T +Q+    +IL ++     M R+LQGDV
Sbjct: 221 VKSRDRVEKGTKIDYQIQLVREFIQQLPFELTGAQKRVTNEILANLKSAWHMNRLLQGDV 280

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA IAM A + +G QA +MAP  ILA+QH   + K+  N  + + ++ G M + 
Sbjct: 281 GSGKTVVAAIAMYATITSGHQAALMAPTEILAEQHANNLIKFFANFDVKIGLLVGGMRKK 340

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R + LE +  G+  I+IGTHAL QD +++  L L I+DEQHRFGV QR KL QK   P 
Sbjct: 341 VRNELLEAVKAGEIDIVIGTHALIQDDVEFKNLGLAIIDEQHRFGVNQRQKLRQKGANPD 400

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L MTATPIPRTL +T+ GD+D+S I + PAGRKP+ T  +     D+V+  ++    +G
Sbjct: 401 ILAMTATPIPRTLAITAYGDMDVSIIDQLPAGRKPVVTKWLKKGEWDKVLALMEHEFKKG 460

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540
           ++A+ + P IEE +  + ++ +  +  L + F     I I+HG+M   +K+ +M  FK G
Sbjct: 461 RQAFVVAPLIEESEVMDLQNAMTLYEELKDFFGQRYAIGILHGKMDGAEKDQIMADFKAG 520

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               L++TTVIEVG+DV +A++++I++A+ FGLAQLHQLRGR+GRG++ + C+L+  P  
Sbjct: 521 KYAGLVSTTVIEVGVDVPNATLMVIQDADRFGLAQLHQLRGRIGRGQQQAYCLLVADPK- 579

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +     R+ ++  T +GF IAE DLK R +G++ G +QSG+P+F +  P +    L+ A+
Sbjct: 580 NAVGKQRMQIMVETNNGFRIAEADLKMRGQGDLFGQQQSGVPEFKVGDPVVDLGALQTAQ 639

Query: 661 KDAKHILTQDPDLTS 675
            +A  I+ Q PD  S
Sbjct: 640 LEAAKIVNQ-PDWQS 653


>gi|257439260|ref|ZP_05615015.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii
           A2-165]
 gi|257198302|gb|EEU96586.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii
           A2-165]
          Length = 698

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 221/647 (34%), Positives = 335/647 (51%), Gaps = 20/647 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P+   +GVG K +    K+            DLL ++P  +ID      I+E   +  
Sbjct: 24  DTPVRYLKGVGPKTAERFEKL------GIVTLADLLCHYPRRYIDFSRPYSIAEAPPDTE 77

Query: 70  VTITGYISQHS--SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             +   +            RR  +I   D    + + +F             G++    G
Sbjct: 78  CVVKAEVFAKPAGRILPGGRRMERITAGDDVSSLEITWFNN--PYATQKLELGQEYYFEG 135

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
            +     R  MV+P      +  +     EAVY    GLS  +  K I + L    +LP+
Sbjct: 136 IVTGGMLRRQMVNPQ--VRTAAQITAAPFEAVYPQTEGLSSTVIAKCIRQLLPHAELLPD 193

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            + +++L+K    S A+A   IH P      E    AR RL Y+ELL  Q+ +  M+ + 
Sbjct: 194 PLPEEMLKKYRLLSKADAVRAIHCPATE---EEAFAARRRLIYEELLVLQLGIGRMKNRG 250

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
               G P+            ++PFSPT +Q  A+ +IL D+S    M R+LQGDVGSGKT
Sbjct: 251 SASTGAPMQRLDP--APFWASLPFSPTGAQRRAVDEILTDLSGSTSMNRLLQGDVGSGKT 308

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           LVA  A+ A + +G QA ++AP  ILA QH E + +      + V ++TG M  A RR  
Sbjct: 309 LVAAAAIWACIRSGYQAALLAPTEILAAQHAENLNRMLAPFGMRVALLTGGMKAAARRTT 368

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  I   +A +++GTHA+  + +++ +L L +VDEQHRFGV+QR  L +KA  PH+L+M+
Sbjct: 369 LAAIRSDEADLVVGTHAILSEGVEFARLGLAVVDEQHRFGVRQRGMLAEKAANPHLLVMS 428

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL L   GD+DIS + E P GRKP+KT  I   +  ++   L   +  G++ Y 
Sbjct: 429 ATPIPRTLGLLIYGDLDISILDELPPGRKPVKTRCITGKKRRDLYGFLDREIGAGRQVYI 488

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP IE+  +    +V   +  + +       + ++HG++   +K +VMD FK G    L
Sbjct: 489 VCPAIEDTPDGGLNAVKSYYEDIAKALLPDRRVGLMHGKLKPKEKAAVMDDFKAGRLDAL 548

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVG+DV +A++++IENAE +GL+ LHQLRGRVGRG   S C L+     +++  
Sbjct: 549 VSTTVIEVGVDVPNATVMVIENAERYGLSALHQLRGRVGRGAAESWCFLV-SDNTAESVQ 607

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            RL  L +T DGF +A+ DL+ R  G+  G +Q G+P   IA     
Sbjct: 608 KRLKFLCSTSDGFAVAQFDLETRGPGDFFGSRQHGLPTLQIADLMND 654


>gi|254178770|ref|ZP_04885424.1| ATP-dependent DNA helicase RecG [Burkholderia mallei ATCC 10399]
 gi|160694684|gb|EDP84692.1| ATP-dependent DNA helicase RecG [Burkholderia mallei ATCC 10399]
          Length = 904

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 252/696 (36%), Positives = 379/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 220 KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 272

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 273 IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 331

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 332 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 390

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 391 LDVPPLADAVRMLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 450

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +    +      + ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT
Sbjct: 451 PAMPRRARDDGAALSARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKT 510

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 511 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAA 570

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           LE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 571 LEAAALGTAQLVIGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAG 630

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R++  
Sbjct: 631 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREA 690

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F
Sbjct: 691 ALAGRQVYWVCPLIEESETLQLQTAVETYETLAVALPELKVGLVHGRLAPAEKAAVMDAF 750

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 751 SRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYS 810

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 811 GPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIE 870

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   P++ +      R L    QY +A
Sbjct: 871 PARDAAARLIAAHPEVVAQ--HLARWLGAREQYLKA 904


>gi|325268106|ref|ZP_08134752.1| DNA helicase RecG [Kingella denitrificans ATCC 33394]
 gi|324980491|gb|EGC16157.1| DNA helicase RecG [Kingella denitrificans ATCC 33394]
          Length = 681

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 227/660 (34%), Positives = 360/660 (54%), Gaps = 16/660 (2%)

Query: 23  YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF 82
            +  L K+      +     DL  + P  + D      IS      +  + G +  H   
Sbjct: 15  TARKLEKL------HLNTAWDLALHLPLRYEDETKIVPISAAPLGEVCQVEGEVL-HQEV 67

Query: 83  QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142
           Q + R+     +    G I  L F       +     G+++   G+IK+   R  M+HP 
Sbjct: 68  QFKPRKQLVAQIKGDDGAILNLRFIHFYPSHQKQLAPGQRVRALGEIKRGYERCEMIHPK 127

Query: 143 YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSI 202
                 Q +    +  +Y    GL+  + +K +  AL+++  + E +   +L     P++
Sbjct: 128 IKSPEKQALAT-SLTPIYPTTNGLTQPVLRKAVQAALAQVD-MHEILPARVLDDLRLPTL 185

Query: 203 AEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258
           AE+   +H P            T P  +RL +DELLA Q+++ L R++ +    +P++ +
Sbjct: 186 AESLRTLHYPPPHLSAGQLGSGTLPEWQRLKFDELLAQQLSMRLARQRRQHGQAMPLSGD 245

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
            ++ + +L N+PF  T +QE    +I  D++Q   M R+LQGDVGSGKT+VA ++   A+
Sbjct: 246 ERLCRALLGNLPFRLTAAQERVCSEIRADLAQSTPMHRLLQGDVGSGKTIVAALSALTAL 305

Query: 319 E--AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           E     Q  IMAP  ILA+QH+   +++ +   + V  ++G++ +  + +A   +A G+ 
Sbjct: 306 ESAQEVQVAIMAPTEILAEQHFMKFRQWLEPLGLTVAWLSGSLKKKEKEQAKAALADGRI 365

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            + +GTHALFQD + + +L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRTL 
Sbjct: 366 RVAVGTHALFQDDVAFRQLGLVIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLA 425

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           ++   D+D+S I E P  R PIKT+++   R  +V   +     +G++ YW+CP IEE +
Sbjct: 426 MSFYADLDVSSIDELPPNRTPIKTLLVNQVRRHDVEGFVLNTCQKGQQVYWVCPLIEESE 485

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
               ++  +    L       S+ ++HGRM   +K +VM  F  G   +L+ATTVIEVG+
Sbjct: 486 VLQLQTATDTLARLQAALPGLSVGLVHGRMKAAEKAAVMAEFIAGRLHVLVATTVIEVGV 545

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +AS+++IE+AE  GLAQLHQLRGRVGRG   SSC+L++  PLS  +  RL V++   
Sbjct: 546 DVPNASLMVIEHAERMGLAQLHQLRGRVGRGAAASSCVLMFAEPLSALARARLKVVREHT 605

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           DGF IA++DL+ R  GE LG +QSG+P    A  +    LLE AR+ A  ++  +P++ +
Sbjct: 606 DGFEIAKQDLEIRGPGEFLGARQSGVPMLRFADLQTDLHLLEAARRVAADLMADEPEIVA 665


>gi|238562011|ref|ZP_00441106.2| ATP-dependent DNA helicase RecG [Burkholderia mallei GB8 horse 4]
 gi|238523487|gb|EEP86925.1| ATP-dependent DNA helicase RecG [Burkholderia mallei GB8 horse 4]
          Length = 902

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 252/696 (36%), Positives = 379/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 218 KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 270

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 271 IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 329

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 330 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 388

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 389 LDVPPLADAVRMLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 448

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +    +      + ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT
Sbjct: 449 PAMPRRARDDGAALSARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKT 508

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 509 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAA 568

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           LE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 569 LEAAALGTAQLVIGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAG 628

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R++  
Sbjct: 629 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREA 688

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F
Sbjct: 689 ALAGRQVYWVCPLIEESETLQLQTAVETYETLAVALPELKVGLVHGRLAPAEKAAVMDAF 748

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 749 SRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYS 808

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 809 GPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIE 868

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   P++ +      R L    QY +A
Sbjct: 869 PARDAATRLIAAHPEVVAQ--HLARWLGAREQYLKA 902


>gi|221214464|ref|ZP_03587435.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD1]
 gi|221165721|gb|EED98196.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD1]
          Length = 791

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 249/695 (35%), Positives = 374/695 (53%), Gaps = 35/695 (5%)

Query: 23  YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF 82
            +  L+K+        TR IDL+ + P  + D      I ++    I    G +   +  
Sbjct: 108 TADKLAKL------GLTRSIDLVLHLPMRYEDETTLTPIRDLLPGGIAQTEGVVID-NEV 160

Query: 83  QLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
             + RR   + + D  GE + L F       +K +   G+++ V G ++     + MVHP
Sbjct: 161 AYRPRRQLVVKIRDDDGEQLVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGMEMVHP 219

Query: 142 HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQKK 197
                 +      ++  VY    G+S    +K I  AL R P LPE +  ++    L+  
Sbjct: 220 AVRVVEADAPLPQVLTPVYPSTAGVSQAYLRKAIENALERTP-LPELLPPEIERDYLKPL 278

Query: 198 SFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
             P++A+A  I+H+P    D     + + PA  R+ ++ELLA Q++L    ++ +     
Sbjct: 279 GVPTLADAVRILHHPGVDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAP 338

Query: 254 PINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +             ++   +PF  T +Q   + +I  D++  + M R+LQGDVGSGKT+
Sbjct: 339 AMPRRTARDTDALTTRLYAALPFRLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTV 398

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A+
Sbjct: 399 VAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKEKRAAI 458

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--------- 419
           E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV QRL L  KA          
Sbjct: 459 EAAALGTAQLVIGTHAIIQDTVEFARLGLVIVDEQHRFGVGQRLALRAKAANAADCAQGF 518

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+M+ATPIPRTL +T   D+D+S I E P GR P+ T ++   R DEVI R++   
Sbjct: 519 QPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPVLTRVVGDARRDEVIARVREAA 578

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
             G++ YW+CP IEE +    ++ VE + +L        + ++HGR+S  DK +VMD+F 
Sbjct: 579 LTGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAFT 638

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  
Sbjct: 639 RNEVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYSG 698

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L++ 
Sbjct: 699 PLSIAGRERLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIDP 758

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           AR  A  ++   PD+ +      R L    QY +A
Sbjct: 759 ARDAAARLIAAYPDVVTQ--HLARWLGAREQYLKA 791


>gi|255530074|ref|YP_003090446.1| ATP-dependent DNA helicase RecG [Pedobacter heparinus DSM 2366]
 gi|255343058|gb|ACU02384.1| ATP-dependent DNA helicase RecG [Pedobacter heparinus DSM 2366]
          Length = 701

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 240/705 (34%), Positives = 367/705 (52%), Gaps = 24/705 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE- 67
           L   +   +GVG + +  L K +         +  LL Y P  +IDR    K++E+  E 
Sbjct: 6   LDTTIEFLKGVGPRRAELLQKEL-----GIFTYGQLLNYFPFRYIDRTRFYKVNELDPEL 60

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V I G I+       + ++     L D TG I L++F +  + +     +G+   V G
Sbjct: 61  PYVQILGRITAKEQIGEKHKKRIVAKLTDETGSIELVWF-QSLKWVDEHIVKGKVYIVFG 119

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLS-----VDLFKKIIVEALS 180
           K         + HP    +           ++ VY+    L          +K+    L 
Sbjct: 120 KPTVFNGSFSISHPDLENYPRPATVTGNLRLQPVYNSTEKLKKSFLDSKGIQKLQALLLE 179

Query: 181 -RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             L  + E I   +LQK       EA   IH P   KD      A  RL ++EL   Q+ 
Sbjct: 180 QHLHEVKETIPPYILQKYQMILRKEAILNIHFP---KDVASLKKAESRLKFEELFFIQLQ 236

Query: 240 LLLMRKQFK-KEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           LL  ++  + K  G   +  G+         +PF  T +Q+  IK+I  D  +  +M R+
Sbjct: 237 LLHNKQLRELKFKGHLFDKVGEGVNTFYREILPFKLTNAQKRVIKEIRLDTQRGIQMNRL 296

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VAL++M  A + G QA +MAP  ILA+QHYE I    ++  + V I+TG
Sbjct: 297 VQGDVGSGKTVVALMSMLLASDNGYQACMMAPTEILARQHYESIISLLKDRLVKVAILTG 356

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQ 416
           +  +  R +    +  G+ +I++GTHAL +D + +  L +V++DEQHRFGV+QR +L  +
Sbjct: 357 SSTKKQRTQLHAALEAGEINILVGTHALIEDKVVFKSLGMVVIDEQHRFGVEQRARLWRK 416

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
            A  PH+L+MTATPIPRTL +T  GD+D+S I E PAGRKPI+T  +   +   +   +K
Sbjct: 417 NAIPPHILVMTATPIPRTLAMTMYGDLDVSVIDELPAGRKPIETRHLYEGQRLRMFGFMK 476

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESV 533
             +++G++ Y + P I+E ++ +   +      +   F      I+I+HG+MS+ DK+  
Sbjct: 477 QEIAKGRQVYVVYPLIKESEKLDLLHLEAGIEQMGYQFPRPDYQISIVHGKMSNADKQYE 536

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F NG  ++++ATTVIEVG++V +AS++IIENAE FGL+QLHQLRGRVGRG   S CI
Sbjct: 537 MQQFINGKSQIMVATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAAQSFCI 596

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+    LS +   RL  +  T +GF I+E DL+ R  G+I G +QSG+ +  +A      
Sbjct: 597 LMSGNKLSADGKLRLETMVKTNNGFEISEIDLQLRGPGDITGTQQSGVLELKLADLAKDQ 656

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
            +L+ AR     +L  DP L       ++  L   +   AF  I 
Sbjct: 657 LILQEARNTVIEVLAADPHLELPENSLLKTYLSKRRTGIAFDKIS 701


>gi|53720475|ref|YP_109461.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei K96243]
 gi|52210889|emb|CAH36877.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei
           K96243]
          Length = 748

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 253/696 (36%), Positives = 379/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   S 
Sbjct: 64  KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-SE 116

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 117 IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 175

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 176 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 234

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 235 LDVPPLADAVRMLHHPGVGADEAALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 294

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +    +      + ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT
Sbjct: 295 PAMPRRARDDGAALSARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKT 354

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 355 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAA 414

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           LE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 415 LEAAALGTAQLVIGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAG 474

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R++  
Sbjct: 475 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREA 534

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F
Sbjct: 535 ALAGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAF 594

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 595 SRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYS 654

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 655 GPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIE 714

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   P++ +      R L    QY +A
Sbjct: 715 PARDAAARLIAAHPEVVAQ--HLARWLGAREQYLKA 748


>gi|86606655|ref|YP_475418.1| ATP-dependent DNA helicase RecG [Synechococcus sp. JA-3-3Ab]
 gi|86555197|gb|ABD00155.1| ATP-dependent DNA helicase RecG [Synechococcus sp. JA-3-3Ab]
          Length = 773

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 243/705 (34%), Positives = 397/705 (56%), Gaps = 33/705 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL   +G+G K +  L+++            D L+Y P   +D   R  I +     
Sbjct: 76  LEQPLQFLKGIGPKSAEKLAQL------GLHTVRDALYYFPRDHLDYSRRVLIRQAKVGE 129

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVF 117
            VT+ G +   S F   K     IL   + D +G +TL  FY   +         L+  +
Sbjct: 130 TVTLVGTVKSCSCFTSPKNPLLTILNLKIADKSGIVTLSRFYSGRQFAQRSWQAALERQY 189

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN---FPLIEAVYSLPTGLSVDLFKKI 174
            +G  +  +G +KK +  + + +P       +  +      I  VY L  G+  DL +K 
Sbjct: 190 PKGAVVAASGLVKKGRLGLTLDNPQLEVLGGEGEDPERLGKILPVYPLSEGIPADLVRKA 249

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           +  AL    ++ + + + L ++     +  A   IH P+     E  + AR RL +DE  
Sbjct: 250 VQLALPAAALVEDPLPEPLKRQLQLLDLPLALQQIHFPKTQ---ELLAQARRRLVFDEFF 306

Query: 235 AGQIALLLMRKQFKKEIGIPINVE---GKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
             Q++LL  R++++ +       +   G++  +  + +PF  T  Q+ AI +IL D+   
Sbjct: 307 YLQLSLLQRRQRYRAQAQAVPRYQPARGELLDRFYQILPFQLTAGQQRAIDEILADLRDP 366

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R+LQGDVGSGKT+VA+ A+ AA+++G QA +MAP  +LA+QHY  + ++    Q+ 
Sbjct: 367 LPMNRLLQGDVGSGKTVVAVAALLAAIQSGWQAALMAPTEVLAEQHYRKLVEWLSQLQVP 426

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++TG+ P A RR+ L ++  G+  +++GTHAL Q ++Q+  L LV++DEQHRFGV+QR
Sbjct: 427 VELLTGSTPPAKRREILRQLQTGELPLVVGTHALIQPAVQFRNLGLVVIDEQHRFGVEQR 486

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             L QK   P VL MTATPIPRTL L   GD+D+++I E P GRKP+ TV+       +V
Sbjct: 487 AALQQKGDHPDVLTMTATPIPRTLTLALHGDLDVTQIDELPPGRKPVHTVVARPGDRLQV 546

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDID 529
           +  ++  +++G++AY + P IEE ++ + +S +E    L E       + ++HGR++  +
Sbjct: 547 VRLMEREIAQGRQAYVVLPLIEESEKLDLKSAIEEHQRLQEKVFPQFRVGLLHGRLTSSE 606

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE+V+++F+     +L++TTV+EVG+DV +AS++++E+AE FGL+QLHQLRGRVGRG + 
Sbjct: 607 KEAVIEAFRRRELDILVSTTVVEVGVDVPNASVMLVEHAERFGLSQLHQLRGRVGRGSDQ 666

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           + CIL+     S+ +  RL VL+ + DGF IAE DL+ R  GE++G +QSG+P F +A  
Sbjct: 667 AYCILMTGSQ-SEEALRRLKVLEQSHDGFFIAEMDLRFRGPGEVMGTRQSGLPDFALASL 725

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
                +L++AR+ A+ ++ QDP+L     Q  R+   L +     
Sbjct: 726 MDDQEVLQLARQAAEQLIAQDPELQ----QWPRLRRILEERQARL 766


>gi|329121239|ref|ZP_08249866.1| DNA helicase RecG [Dialister micraerophilus DSM 19965]
 gi|327470173|gb|EGF15636.1| DNA helicase RecG [Dialister micraerophilus DSM 19965]
          Length = 678

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 227/673 (33%), Positives = 368/673 (54%), Gaps = 17/673 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   + VG K    L K+      N     DL+ + P  + D      +  I    
Sbjct: 3   LEDSVMKVKCVGPKMFEKLGKL------NIKTVEDLINFFPRKYQDWSKITPMENIVIGE 56

Query: 69  IVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
              I G I +       +  R   ++L D    +TL +F +     K  F    +I   G
Sbjct: 57  ECLIYGKIVKIDERILRRGMRLLSVILTDNINSVTLTYFNQS--WKKKQFNINEEILAYG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDV-NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           K++ L  +  + +        +++ NF  +  +Y L  G++    + +I  AL  +  L 
Sbjct: 115 KVEYLYGKYQISNAEIEAVPKENLKNFEKLVPIYPLTEGITATQMRSMIAFALKNVSNLK 174

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +  ++L +++FP    A  ++HNP+  K+ E    AR+RLA++EL   Q  +L+++++
Sbjct: 175 ENLPIEILTRENFPDKLLAVKMLHNPKNYKEKE---TARKRLAFEELFFMQAGILMLKEK 231

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            K     I  +  GK+ + +L   PF  TK Q+ A  DI  DM     M R+LQGDVGSG
Sbjct: 232 RKINSYGIKCSPSGKLVKSVLNKFPFELTKDQKKAFSDIENDMEDIEPMYRLLQGDVGSG 291

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT +A +  A  VE G QA +MAP  +LA QHY+      +N  + +  ++GN+  + R 
Sbjct: 292 KTAIAALTAAKIVENGYQATLMAPTEVLASQHYKTFLNLYKNLSVEIAYLSGNIKNSERE 351

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
             L ++  G+  I+IGTHAL ++++++  L LVI DEQHRFGV+QR  L  K   PHVL+
Sbjct: 352 VLLNKLKSGEIDILIGTHALIENNVKFAHLGLVITDEQHRFGVKQRELLETKGENPHVLV 411

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRT+ L+  GD+D S I + P GRKP+KT +I    +  V+  +K  + +G +A
Sbjct: 412 MTATPIPRTMALSVYGDLDASVINQMPIGRKPVKTYVINDKLLQRVLIFIKKEIQKGHQA 471

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP +EE ++++  + +  ++ L ++  S     +I+G+M + +KE +M+ F     +
Sbjct: 472 YIVCPLVEESEKTDLAAAISVYDKLRKNIFSEYKCGLIYGKMKNSEKEQIMNDFCENKLQ 531

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT+VIEVG++V +A+++++  AE FGL+QLHQLRGRVGRG+  S CIL Y    ++ 
Sbjct: 532 ILVATSVIEVGVNVPNATVMLVYGAERFGLSQLHQLRGRVGRGKIQSYCIL-YTKNTNET 590

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL+++    +GFL++E+DL  R  GE+ G  Q GMP   +A       LLE AR  A
Sbjct: 591 TTLRLNIMTKINNGFLLSEKDLMLRGSGELFGYHQHGMPDLKVANIIKDLPLLEKARNYA 650

Query: 664 KHILTQDPDLTSV 676
           +  +  + ++ S 
Sbjct: 651 QKFIHSEKNIKSE 663


>gi|325567339|ref|ZP_08144006.1| DNA helicase RecG [Enterococcus casseliflavus ATCC 12755]
 gi|325158772|gb|EGC70918.1| DNA helicase RecG [Enterococcus casseliflavus ATCC 12755]
          Length = 695

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 220/692 (31%), Positives = 377/692 (54%), Gaps = 25/692 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+  +GVG+K +  L+ +            DLL Y+P  + D   R +++EI ++ 
Sbjct: 21  LNQPLTVLKGVGEKRAQDLASL------GIETIEDLLKYYPFRYEDIQER-QLAEIQDQE 73

Query: 69  IVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            VTI G +           K+   +  +        + FF +    LK+      +I V 
Sbjct: 74  KVTIKGIVVSPPVVNRFGYKKSRLQFRMMQDHDVFNVSFFNQ--PYLKDKVEVSEEIAVY 131

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA-LSRLPVL 185
           GK    +  +  +    I  +    +F     +Y +   +   +  ++I +A L     +
Sbjct: 132 GKWDAKRKGLTGMK---ILGSKSAEDFA---PIYHVNKVVRQSVLIELIKQAFLDFGDQI 185

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMR 244
            E +   L++K        A   +H P   KD + +  A+ R+ ++E    Q+ +  L +
Sbjct: 186 TEILPLSLIEKYRLLDRKSAMFAMHFP---KDPQESHQAKRRVIFEEFFLFQMQIQGLKK 242

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            +  ++ G+ I+ + +  ++  R +PF  T +Q+    +I  D+     M R+LQGDVGS
Sbjct: 243 SEKAEKNGLAIDYDVQRLKEFTRKLPFELTNAQKRVTNEICHDLKSPQHMQRLLQGDVGS 302

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA I + A + AG Q  +M P  ILAQQH E + +     ++   ++TG+     R
Sbjct: 303 GKTVVAAITLYATMTAGFQGALMVPTEILAQQHLESLNQLFDPLEVTTALLTGSTKPKER 362

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R  LE++A G+  II+GTHAL Q+ + +  L LVI DEQHRFGV QR  L +K   P VL
Sbjct: 363 RVILEQLAAGEIDIIVGTHALIQEGVDFAHLGLVITDEQHRFGVNQRKVLREKGYLPDVL 422

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            MTATPIPRTL +T+ G++D+S I E PAGR P++T  +   + + ++E  +  L++G +
Sbjct: 423 FMTATPIPRTLAITAYGEMDVSVIDEMPAGRIPVETRWVRPPQFESILEWAQKELAQGHQ 482

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            Y ICP IEE +  + ++  E +  L  +F  T  + ++HG+M + +K+++M++FK    
Sbjct: 483 MYVICPLIEESEMLDVKNATEIYEQLQSYFSPTYQVGMLHGKMKNQEKDTIMEAFKENQL 542

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P  ++
Sbjct: 543 QILVSTTVIEVGVNVPNATVMLIIDADRFGLAQLHQLRGRVGRGADASYCILIANPK-NE 601

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F  A       +LE+A+ +
Sbjct: 602 TGVERMKIMTETTNGFVVSEKDLQLRGPGEVFGNRQSGLPEFAAADLVADAHILEVAQVE 661

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           A  +  ++         ++   L   + ++ F
Sbjct: 662 ATQLWQKNGWQLLPEFSALANYLAAKKADKQF 693


>gi|315646187|ref|ZP_07899307.1| ATP-dependent DNA helicase RecG [Paenibacillus vortex V453]
 gi|315278386|gb|EFU41702.1| ATP-dependent DNA helicase RecG [Paenibacillus vortex V453]
          Length = 683

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 219/661 (33%), Positives = 359/661 (54%), Gaps = 13/661 (1%)

Query: 29  KIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ-LQKR 87
           K         +   DLL Y+P  + D   R  +SE+ +   +TI   I+     Q    +
Sbjct: 20  KEGELHAFGVSTVKDLLEYYPFRYEDYRLR-SLSEVKDGDRITIQAKIASVPVLQRYGGK 78

Query: 88  RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN 147
                 +       T  +F R    LK+    GR+I +TGK  + + ++ +    +   +
Sbjct: 79  SRLTCKMLAENWMFTATWFNR--HFLKDQLTAGREIVLTGKWDQRRMQLTVSESEF--PD 134

Query: 148 SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAF 206
                   ++ VYS+   ++    +K + +AL +   ++PE + + LL+K        A 
Sbjct: 135 KGAFRSGTLQPVYSIGGKITQSWIRKTMGQALEQYGEMIPEILPQFLLRKYDLMPRKGAI 194

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVEGKIAQKI 265
             IH P  +++ +     R R+ Y+EL   Q+ +   R   + +  G+    +    ++ 
Sbjct: 195 LTIHQPVDSREGQE---GRRRMVYEELFLFQLKMQAFRALNRGRMDGVVHTADNATIREF 251

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           +R+ PF  T +Q+    +IL DM     M R+LQGDVGSGKT+VA IA+   V +G Q  
Sbjct: 252 VRSFPFELTDAQKKVELEILHDMRSPYCMNRLLQGDVGSGKTIVAAIALFTTVRSGFQGA 311

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +M P  ILA+QH   ++K  +   I V ++TG++    R+  L  +  G   +++GTHAL
Sbjct: 312 LMVPTEILAEQHMRSLQKLFEPFGITVGLLTGSVTGKKRKDLLASLQMGLIDVVVGTHAL 371

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            QD + + +L LV+ DEQHRFGV QR  L +K   P VL MTATPIPRTL +T+ GD+D+
Sbjct: 372 IQDDVYFRELGLVVTDEQHRFGVNQRSVLRRKGYNPDVLTMTATPIPRTLAITAFGDMDV 431

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S ++E+P GR PI T  +    ++ V+  +   + +G++AY I P IEE  + + ++ ++
Sbjct: 432 STLSERPKGRIPITTYWVKHELMERVLGFISREVDQGRQAYLIAPLIEESDKLDVQNAID 491

Query: 506 RFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
               + + F   ++ ++HGRM+  +K+ VM  F +   +LLI+TTV+EVG+DV +A+++I
Sbjct: 492 LHVQMQQAFPKYAVGLLHGRMTPAEKDEVMRQFYSNEVQLLISTTVVEVGVDVPNATLMI 551

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ FGL+QLHQLRGRVGRG+  S C+L+  P  S+    R+ V+  TEDGF ++  D
Sbjct: 552 IMDADRFGLSQLHQLRGRVGRGQHASYCVLVADPK-SEVGQERMQVMTETEDGFEVSRRD 610

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           L+ R  G+  G KQSG+P+F +A       ++E AR DA  +++     TS   + +R  
Sbjct: 611 LELRGPGDFFGTKQSGLPEFRLADMVADFKVVEEARGDAAALVSDTAFWTSPEYEPLREF 670

Query: 685 L 685
           L
Sbjct: 671 L 671


>gi|304384760|ref|ZP_07367106.1| DNA helicase RecG [Pediococcus acidilactici DSM 20284]
 gi|304328954|gb|EFL96174.1| DNA helicase RecG [Pediococcus acidilactici DSM 20284]
          Length = 675

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 217/675 (32%), Positives = 366/675 (54%), Gaps = 27/675 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   +    GVG K +  L ++            DL+ Y+P  + D   +    E++
Sbjct: 1   MKSLTDSVQVLAGVGPKRAQALQEL------GIQTIEDLITYYPFRYEDLAAKKP-QEVA 53

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           +++ VT  G ++   +     R   ++          + + FF +    +K      +++
Sbjct: 54  DQQKVTFQGIVATAPTIVRFGRHKVRVNFRLLVENSSVMVTFFNQ--PWIKKQLEANQEV 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182
            + GK    +  +  +    I    Q      +EAVY     +     ++++  AL    
Sbjct: 112 AIYGKWDANRQSLTGIK---IITEEQ-----GMEAVYPANKHIRQATIQQLVEAALNEYA 163

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + + I + L++K            +H P    D + T  AR    ++E L  Q+ L +
Sbjct: 164 EQVQDVIPEALIEKYRLMHRLAMIKALHFP---GDEQITKQARRTAMFEEFLVFQMGLQV 220

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           ++ + + E G  I+ + ++ ++ ++ +PF  T +Q+    +IL ++     M R+LQGDV
Sbjct: 221 VKSRDRVEKGTKIDYQIQLVREFIQQLPFELTGAQKRVTNEILANLKSAWHMNRLLQGDV 280

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA IAM A + +G QA +MAP  ILA+QH   + K+  N  + + ++ G M + 
Sbjct: 281 GSGKTVVAAIAMYATITSGHQAALMAPTEILAEQHANNLIKFFANFDVKIGLLVGGMRKK 340

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R + LE +  G+  I+IGTHAL QD +++  L L I+DEQHRFGV QR KL QK   P 
Sbjct: 341 VRNELLEAVKAGEIDIVIGTHALIQDDVEFKNLGLAIIDEQHRFGVNQRQKLRQKGANPD 400

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L MTATPIPRTL +T+ GD+D+S I + PAGRKP+ T  +     D+V+  ++    +G
Sbjct: 401 ILAMTATPIPRTLAITAYGDMDVSIIDQLPAGRKPVVTKWLKKGEWDKVLALMEHEFKKG 460

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540
           ++A+ + P IEE +  + ++ +  +  L + F     I I+HG+M   +K+ +M  FK G
Sbjct: 461 RQAFVVAPLIEESEVMDLQNAMTLYEELKDFFGQRYAIGILHGKMDGAEKDQIMADFKAG 520

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               L++TTVIEVG+DV +A++++I++A+ FGLAQLHQLRGR+GRG++ + C+L+  P  
Sbjct: 521 KYAGLVSTTVIEVGVDVPNATLMVIQDADRFGLAQLHQLRGRIGRGQQQAYCLLVADPK- 579

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +     R+ ++  T +GF IAE DLK R +G++ G +QSG+P+F +  P +    L+ A+
Sbjct: 580 NAVGKQRMQIMVETNNGFRIAEADLKMRGQGDLFGQQQSGVPEFKVGDPVVDLGALQTAQ 639

Query: 661 KDAKHILTQDPDLTS 675
            +A  I+ Q PD  S
Sbjct: 640 LEAAKIVNQ-PDWQS 653


>gi|83589774|ref|YP_429783.1| ATP-dependent DNA helicase RecG [Moorella thermoacetica ATCC 39073]
 gi|83572688|gb|ABC19240.1| ATP-dependent DNA helicase RecG [Moorella thermoacetica ATCC 39073]
          Length = 680

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 240/686 (34%), Positives = 360/686 (52%), Gaps = 22/686 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P++T + VG + +  LS++            DLL++ P  + DR     ++ ++   
Sbjct: 3   LDHPVATLKYVGHQRAARLSRL------GIQTVGDLLWHFPRRYEDRRQLKDLAAVAPGE 56

Query: 69  IVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           +VT+   I      +++ R R  + L+    G    ++F +    LK     G  + +TG
Sbjct: 57  VVTVQVTIRAWEEREVRPRLRLIRALIQGRQGTGFAVWFNQ--PYLKRQMPPGTGVILTG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-V 184
           K++    R  +    Y      D  ++   I   Y+L  GLS    + +I  AL  +   
Sbjct: 115 KVRYRDYRPEIQVSDYEALGEGDPGLHTGRIVPFYALTAGLSQRWLRLVIHLALEAVAGD 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPE +   L ++       +A   IH P    D      AR RL Y+ELL  ++ L L R
Sbjct: 175 LPEVLPLSLCRRYRLIPRLQALKYIHFPP---DAAGLHQARRRLKYEELLIWELGLNLHR 231

Query: 245 -KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            +Q +   GI       +  +++ ++PF  T +Q  A+ +IL DM     M R+LQGDVG
Sbjct: 232 VQQEQGRQGIAHTPANNLVNRLVDSLPFKLTSAQARALAEILADMEAPRPMARLLQGDVG 291

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA  AM  AV  G QA +MAP  +LA+QH   + +     ++ V  +TG+ P+  
Sbjct: 292 SGKTVVAAAAMVKAVAGGWQAALMAPTEVLAEQHGRTLGQLLAPLRLPVVTLTGSTPRTE 351

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           R   L  +A GQ  +++GTHAL QD + +  L LV++DEQHRFGV QR  L  K   P +
Sbjct: 352 RENILAGLASGQLPLVVGTHALIQDDVSFKSLGLVVIDEQHRFGVDQRAALQTKGECPDL 411

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL L   GD+DIS + E P GR+P+ T +I   +       ++  +  G 
Sbjct: 412 LVMTATPIPRTLALAIYGDLDISVLDELPPGRQPVATYVITEKQRPRAYRLIEREIRAGH 471

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY ICP I+        +       L E       + ++HGR+   +KE VM++F+ G 
Sbjct: 472 QAYVICPVIDANDGVAVEAATAMARKLQEEVFPGYPVGLVHGRLRPAEKEEVMNAFREGK 531

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ATTV+EVG+DV +A++++IE AE  GLAQLHQLRGRVGRG   + C L+     S
Sbjct: 532 IAILVATTVVEVGVDVPNATVMLIEGAERLGLAQLHQLRGRVGRGTAAAYCFLVTRG--S 589

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + +  RL++L    DGF IAE DL+ R  GE  G +Q G+P+F +AQ      +LE AR+
Sbjct: 590 QAARERLAILTTNRDGFAIAEADLRLRGPGEFFGTRQHGLPEFHLAQLPGDSHILEQARQ 649

Query: 662 DAKHILTQD-PDLT-SVRGQSIRILL 685
           DA+ I  Q+ P L      Q+ R  L
Sbjct: 650 DAREICRQEGPSLEYEALYQAAREKL 675


>gi|149277295|ref|ZP_01883437.1| ATP-dependent DNA helicase [Pedobacter sp. BAL39]
 gi|149232172|gb|EDM37549.1| ATP-dependent DNA helicase [Pedobacter sp. BAL39]
          Length = 701

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 369/711 (51%), Gaps = 28/711 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           F   L   +   +GVG K +  L K +         +  LL + P  +IDR    K+ E+
Sbjct: 2   FAASLDTTIEFLKGVGPKRAELLQKEL-----GIYTYEQLLNFFPFRYIDRTRFYKVKEL 56

Query: 65  SEE-RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           + +   V I G I+       + +R     L D TG I L++F +  + +      G+  
Sbjct: 57  NPDLPYVQILGRITGKEQIGEKHKRRIVARLTDETGSIELVWF-QSLKWVDENVMRGKVY 115

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLS--------VDLFKK 173
            V GK         + HP    +           ++ VY+    L         +   + 
Sbjct: 116 IVFGKPTLFNGSFSISHPELEPYPRPTTMTGNLRLQPVYNSTEKLKKFFLDSKGIQKLQT 175

Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
           +I+E    L  + E +   +LQK    S  +A   IH P   KD E    A  RL ++EL
Sbjct: 176 LIIE--QHLSEIRETLPMPVLQKYQMVSRKQALLNIHFP---KDVEALKAAERRLKFEEL 230

Query: 234 LAGQIALLLMRKQFK-KEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQK 291
              Q+ LL  +K  + K  G      G       ++ +PF  T +Q+  IK+I  D  + 
Sbjct: 231 FFIQLQLLHNKKLRELKFKGHRFEAVGSRVNTFYKDILPFEMTGAQKRVIKEIRMDTQRG 290

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
            +M R++QGDVGSGKT+VAL++M  A + G QA +MAP  ILA+QH+E I          
Sbjct: 291 IQMNRLVQGDVGSGKTVVALMSMLLANDNGFQACMMAPTEILARQHHESITSLLDGKLSK 350

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V ++TG+  +  R K    + +G+  I++GTHAL +D + +  L +V++DEQHRFGV+QR
Sbjct: 351 VAVLTGSTTKKQRTKLHAELQNGEIDILVGTHALIEDKVVFKNLGMVVIDEQHRFGVEQR 410

Query: 412 LKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            KL +K T  PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI+T      +   
Sbjct: 411 AKLWRKNTVPPHILVMTATPIPRTLAMTLYGDLDVSVIDELPVGRKPIETRHFFEGQRLR 470

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSD 527
           +   +K  +++G++ Y + P I+E ++ +   +      + + F      I+I+HG+MS+
Sbjct: 471 MFGFMKAEIAKGRQVYIVYPLIKESEKLDLLHLEAGIEQISDQFPRPEYQISIVHGKMSN 530

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            DK+  M  F +G  ++++ATTVIEVG++V +ASI++IENAE FGL+QLHQLRGRVGRG 
Sbjct: 531 ADKQFEMQQFIDGKSQIMVATTVIEVGVNVPNASIMVIENAERFGLSQLHQLRGRVGRGA 590

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           E S CIL+    LS +   RL  +  T +GF I+E DL+ R  G+I G +QSG+ +  +A
Sbjct: 591 EQSYCILMSGNKLSADGRLRLDTMVKTNNGFEISEIDLQLRGPGDITGTQQSGVLELKLA 650

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
                  +L+ AR     IL +DP L       ++  L       AF  I 
Sbjct: 651 DLATDQLILQEARSTVMDILNKDPQLEDPAYSLLKTYLAKRSRGIAFDKIS 701


>gi|186477271|ref|YP_001858741.1| ATP-dependent DNA helicase RecG [Burkholderia phymatum STM815]
 gi|184193730|gb|ACC71695.1| ATP-dependent DNA helicase RecG [Burkholderia phymatum STM815]
          Length = 740

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 257/696 (36%), Positives = 385/696 (55%), Gaps = 33/696 (4%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
            K +  L+K+        TR IDL+ + P  + D      I E+    I    G +   +
Sbjct: 55  AKTADKLAKL------GLTRDIDLVLHLPMRYEDETSLTPIGELLPGDIAQTEGVVYD-N 107

Query: 81  SFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
               + RR   + + D  G E+ L F       +K +   G ++ V G ++     + MV
Sbjct: 108 EIAYRPRRQLLVKMRDDAGDELILRFLNFYGSQVKQM-SVGVRLRVRGDVRGGFFGMEMV 166

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL---PVLPEWIEKDLLQK 196
           HP     +        +  VY    G+S    +K I  AL+R     +LPE IE+  L+ 
Sbjct: 167 HPAVRAVDEDTPLPQALTPVYPSTAGVSQAYLRKAIDNALARTSLPELLPEPIERQYLRP 226

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P++ +A   +H+P    D     + T PA  R+ ++ELLA Q++L    ++ +    
Sbjct: 227 LEVPALMDAVRTLHHPNSHSDETALIDGTHPAWTRIKFEELLAQQLSLKRAHEERRTRAA 286

Query: 253 IPINV-----EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +       E  +  ++L+ +PFS T +Q+    +I QD++Q + M R+LQGDVGSGKT
Sbjct: 287 PAMPRRAATDETSLVARLLKTLPFSLTGAQQRVCGEIAQDLTQPHPMQRLLQGDVGSGKT 346

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 347 VVAALAAAQAIDAGYQAAMMAPTEILAEQHARKLRGWLEPLGVTVAWLAGSLKTKEKRSA 406

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           +E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 407 IEAAALGTAQLVIGTHAIIQDAVEFARLGLVIVDEQHRFGVEQRLALRAKAQNAADGARD 466

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+++S I E P GR PI T ++   R DEVI R++  
Sbjct: 467 FQPHQLMMSATPIPRTLAMTYYADLEVSTIDELPPGRTPILTKLVSDGRRDEVIGRVREA 526

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++ ++K SVMD+F
Sbjct: 527 ALTGRQVYWVCPLIEESETLQLQTAVETYETLVAALPELRVGLVHGRLTPVEKASVMDAF 586

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 587 GRNEVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYT 646

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 647 GPLSMTARARLQTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIE 706

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR+ A  +L Q P++ +     +R L    QY +A
Sbjct: 707 PAREAATTLLAQYPNVVTQ--HLLRWLNTREQYLKA 740


>gi|254788371|ref|YP_003075800.1| ATP-dependent DNA helicase RecG [Teredinibacter turnerae T7901]
 gi|237685871|gb|ACR13135.1| ATP-dependent DNA helicase RecG [Teredinibacter turnerae T7901]
          Length = 677

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 236/664 (35%), Positives = 373/664 (56%), Gaps = 20/664 (3%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           G K +   +K+            DLLF+ P  ++DR     + ++     V I G + + 
Sbjct: 2   GDKLAANFAKL------GLHSQQDLLFHLPLRYLDRTRITPLGQLQLNTSVMIQGAVLRT 55

Query: 80  SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
                 ++R   + L D +G+  L F++  T   K+    G  +   G+ +   + +   
Sbjct: 56  Q-VTFGRKRSLLVQLEDESGQTCLRFYHF-TAYQKDRLEPGTLLRCYGEPRLGSSGLEFY 113

Query: 140 HPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--EWIEKDLLQ 195
           HP Y   ++         +  VY L  G+S    + +I + L+++   P  E++ +D+ Q
Sbjct: 114 HPEYDVIDAAAPPPLDNTLTPVYGLTEGVSQQRMRSVIEQVLAKIKQSPPDEYLPRDVNQ 173

Query: 196 KKSFPSIAEAFNIIHNPRKA----KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           + +  S++EA   +H P  +       E   P+++RLAY+ELLA  +    +     ++ 
Sbjct: 174 RFACESLSEALLCVHQPPHSVQVKSLLEGHHPSQQRLAYEELLAHFLVKRKLHAIAARQK 233

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
              + ++  + ++ L  +PF+ T +Q+   ++I  D++  + MLR++QGDVGSGKTLVA 
Sbjct: 234 APRLTLDTSLQERFLAQLPFALTGAQQRVCREIFNDLANGSPMLRMVQGDVGSGKTLVAA 293

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +A  A +++G Q  ++AP  ILA+QH+     +       VE + G +  A RR ALERI
Sbjct: 294 LAALAGIDSGFQVAVVAPTEILAEQHFRNFDGWLSGLGFQVEWLVGKLTVAKRRNALERI 353

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTA 428
           A G+A +I+GTHALFQ+ + + +L L IVDEQHRFGV QRL L +       PH L+MTA
Sbjct: 354 ASGEAQVIVGTHALFQEGVNFARLGLSIVDEQHRFGVDQRLSLRKTNADDQLPHQLVMTA 413

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL + +  ++D S I E P GR P+ TV+I   R  +V+ER++   +EG++ YW+
Sbjct: 414 TPIPRTLAMAAYAELDYSVIDELPPGRTPVNTVLISQRRRAQVVERIRAACAEGRQVYWV 473

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           C  +EE +     +  +  + L E     +I ++HGR+   +KE+VM +FK    +LL+A
Sbjct: 474 CTLVEESESLAAANAEQTASELREALADIAIGLVHGRLKATEKETVMAAFKAAELQLLVA 533

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY   LS+ +  R
Sbjct: 534 TTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTTASHCVLLYGDKLSEQARQR 593

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L VL+ T DGFL+AE+DL+ R  GE+LG +Q+G  ++ +A     + LL    +  +  L
Sbjct: 594 LQVLRETNDGFLVAEKDLQLRGPGEVLGTRQTGDMQYRVADMVRDEHLLPEIHQLGEQYL 653

Query: 668 TQDP 671
              P
Sbjct: 654 HHQP 657


>gi|27262498|gb|AAN87530.1| ATP-dependent DNA helicase recG [Heliobacillus mobilis]
          Length = 807

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 231/676 (34%), Positives = 367/676 (54%), Gaps = 21/676 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +   RGVG + +  L ++            DLLF+ P  +IDR     I++I       +
Sbjct: 132 IQFLRGVGPQRAAALKRL------GIETIQDLLFHLPHRYIDRSQLLSIAQIRYPGDYNV 185

Query: 73  TGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           +G I  +   Q   RR   ++   L+DGTG + ++ F RK   L   +  G  + V+GK+
Sbjct: 186 SGVIRAYQ--QYNPRRGLAVIKGQLDDGTGILPIVLFNRKQ--LTAKYPPGTAVIVSGKV 241

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
           +    +  +            ++   I  VY    GL+    + +  + + +  P + + 
Sbjct: 242 EFRYGKAELHVEEIENQAEAGLHTNRIVPVYPATEGLNQRFLRGLYEQVIPKYAPQMNDI 301

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           + K L +  + P++++A   +H P      E     R +LA++E    Q A   +R++  
Sbjct: 302 VPKGLDRSTNLPALSQAVQWVHFPDS---LEQAELGRRKLAFNEAFLLQTAWQFIRRRRN 358

Query: 249 KEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             I  I      +   K+   +P+  T +Q+  +++I  DM     M R+LQGDVG+GKT
Sbjct: 359 VPIEGIGHKPAQEELNKLWSLLPYELTAAQKRVVREIAADMEANRPMNRLLQGDVGAGKT 418

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA  A+  AV +G QA +MAP  +LA+QH    ++      I V  ++G++ +  + + 
Sbjct: 419 IVAASAVVKAVASGYQAALMAPTEVLAEQHAISWQRLLAEMAIPVAHLSGSLTRRRKEEV 478

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L+ ++ G   +++GTHAL Q  + + +L LV++DEQHRFGV+QR  L +K     +L+MT
Sbjct: 479 LKGLSEGTYPVVVGTHALLQKEVVFQRLGLVVIDEQHRFGVRQRAALWEKGQQADLLVMT 538

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S + E+P GR+ +KT  +  +    V   ++  +S+G +AY 
Sbjct: 539 ATPIPRTLAMTLYGDLDVSILNERPPGRQEVKTYHVGSDTWPRVYNLIRREVSQGHQAYI 598

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP IEE +E +  +V ER+ +L         + I+HGRM   +K +VM+ F  G  K+L
Sbjct: 599 VCPAIEESEEMDLAAVEERYGTLTRDVFPDLEVGILHGRMKKEEKAAVMERFYRGNTKVL 658

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVGIDV  A++++IE AE FGLAQLHQLRGRVGRG+  S CIL+    LS    
Sbjct: 659 VATTVIEVGIDVPAATVMVIEGAERFGLAQLHQLRGRVGRGQAQSFCILI-ADKLSDEGK 717

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+S ++ T DGF +AEEDLK R  GE LG +QSG+P F +A       LL+ A+  ++ 
Sbjct: 718 RRMSAMEGTNDGFRLAEEDLKLRGPGEFLGTRQSGIPAFKVADLVKDADLLDQAKSASEQ 777

Query: 666 ILTQDPDLTSVRGQSI 681
              QDP L     + +
Sbjct: 778 WNAQDPTLQRPESREL 793


>gi|295102722|emb|CBL00267.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii L2-6]
          Length = 686

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 223/647 (34%), Positives = 333/647 (51%), Gaps = 20/647 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P+   +GVG K +    K+            DLL ++P  ++D      I+E   +  
Sbjct: 12  DTPVRYLKGVGPKTAERFEKL------GILTLSDLLCHYPRRYLDFSKPYSIAEAPADTE 65

Query: 70  VTITGYISQHS--SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             +   +            RR  +I   D    + + +F             G++    G
Sbjct: 66  CVVKAEVFAKPGGRILPGGRRMERITAGDDVSSLEITWFNN--PYAAQKLELGQEYYFQG 123

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
            +     R  MV+P         V     EAVY    GL+     K + + L    +LP+
Sbjct: 124 IVTGGMLRRQMVNPQ--VRTDAQVKSSPFEAVYPQTEGLTSSAIAKCVRQLLPHAELLPD 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +  ++L+K    S A+A   IH P      E    AR RL Y+ELL  Q+ +  M+   
Sbjct: 182 PLPPEMLKKYRLLSKADAVRAIHCPATE---EEAFAARRRLIYEELLVLQLGIGRMKNHG 238

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
               G P+            ++PFSPT +Q  A+++IL DMS +  M R+LQGDVGSGKT
Sbjct: 239 AASTGAPMKKAD--VSPFWESLPFSPTGAQRRAVEEILTDMSGETSMNRLLQGDVGSGKT 296

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           LVA  A+ A + AG QA ++AP  ILA QH E + +      +   ++TG M  A RR  
Sbjct: 297 LVAAAAIWACIRAGYQAALLAPTEILASQHAENLNRLLSPFGMRAALLTGGMKAAARRTT 356

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  I   +A +I+GTHA+  + +++ +L L +VDEQHRFGV+QR  L +KA  PH+L+M+
Sbjct: 357 LAAIRDDEADLIVGTHAILSEGVEFARLGLAVVDEQHRFGVRQRGLLAEKAANPHLLVMS 416

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL L   GD+DIS + E P GRKP+KT  I   +  ++   L   +  G++ Y 
Sbjct: 417 ATPIPRTLGLLMYGDLDISILDELPPGRKPVKTRCITGKKRADLYGFLDREIDSGRQVYI 476

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP IE+   S   +V   +  + + +     + ++HG++   +K  VMD FK+G    L
Sbjct: 477 VCPAIEDAGGSGLNAVKSYYEDIAKAYLPDRRVGLMHGKLKPKEKAEVMDDFKSGRLDAL 536

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVG+DV +A++++IENAE +GL+ LHQLRGRVGRG   S C L+     S++  
Sbjct: 537 VSTTVIEVGVDVPNATVMVIENAERYGLSALHQLRGRVGRGAAESWCFLV-SDNASESVQ 595

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            RL  L +T DGF +A+ DL+ R  G+  G +Q G+P   IA     
Sbjct: 596 KRLKFLCSTSDGFAVAQYDLETRGPGDFFGSRQHGLPTLQIADLMND 642


>gi|291287337|ref|YP_003504153.1| ATP-dependent DNA helicase RecG [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884497|gb|ADD68197.1| ATP-dependent DNA helicase RecG [Denitrovibrio acetiphilus DSM
           12809]
          Length = 761

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 231/696 (33%), Positives = 371/696 (53%), Gaps = 27/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            +    G+GKK +  L K       +     D+L+  P  +        I E    +   
Sbjct: 86  SVDELPGIGKKATESLKK------QHIETVEDVLYNFPYRYE------YIGESRSGKKA- 132

Query: 72  ITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           +TG     +    + ++R YK + +   G+   ++F         V  EG+K T+ G+  
Sbjct: 133 LTGIFQTGAVVTTKNRKRIYKAVFSGDFGQFAAVWFRFSAGYPAGVLKEGKKYTIYGQSG 192

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLPEWI 189
                  ++HP ++  +        I  VYSLP  ++  ++   +  AL   L  +P+ +
Sbjct: 193 SFSGMESIIHPQFMKESE----MGNIIPVYSLPKSVAQKVYYTAVNAALDKYLDQIPDHL 248

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR----ERLAYDELLAGQIALLLMRK 245
              L +K  FPS  +A   IH P+   + E  S  R    +R  Y+EL   Q+ LL  ++
Sbjct: 249 PARLEEKYKFPSSKQALLEIHRPKNPYELEALSEKRHPAAKRFIYEELFYLQMGLLYKKR 308

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            ++++ G   +++ +    I   +PF  T +Q   + +I  DMS   +M R++QGDVGSG
Sbjct: 309 AYERQSGTVFDIKKEYLDWIKDLLPFKFTGAQRRVMAEIFNDMSSTGQMNRLVQGDVGSG 368

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  A   AV+ G Q  ++AP  +LA+QH   + K    T +   ++TG++  A ++
Sbjct: 369 KTIVAFTAGLVAVKNGYQVAVIAPTEVLARQHMLNLLKLISGTNVTAVLLTGSVSGAEKK 428

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
              E IA G    ++GTHA+ Q+   + KL L I+DEQHRFGV+QR  L +K   P +LL
Sbjct: 429 HTKELIAAGHVDFVLGTHAVIQEDADFAKLGLAIIDEQHRFGVEQRKSLIEKGYMPDILL 488

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L+  GD+DIS I E P GR PI TV      I+ V   ++  + +G   
Sbjct: 489 MTATPIPRTLALSFYGDLDISIIDELPPGRTPINTV--SEKNIERVYPLMREEIKKGHGV 546

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           Y I P I+  ++ + ++  +    L + F + ++ ++HGRM    K  +MD+FK G  ++
Sbjct: 547 YVIYPLIDTSEKLDLKAATDEHRKLSQEFGADNVGLLHGRMKHEQKSELMDAFKAGNIQV 606

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG+DV  A++++IENAE FGL+QLHQLRGRVGR +  S C+L+    +S  +
Sbjct: 607 LVSTTVIEVGVDVPHATVMVIENAERFGLSQLHQLRGRVGRSDRQSYCVLVASENVSDEA 666

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R++ +    DGF ++E DL+ R  G+  G +QSG+P+F  +       +L+ AR DA 
Sbjct: 667 SERINAMCAHADGFKLSEIDLEMRGPGDFFGTRQSGLPEFRFSNIVRDVRILQDARSDAA 726

Query: 665 HILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            IL+ D DL+S +   I+ +L + ++    Q+I  G
Sbjct: 727 DILSDDQDLSSPKNTVIKQVL-IRKWRSELQYIEIG 761


>gi|296315116|ref|ZP_06865057.1| ATP-dependent DNA helicase RecG [Neisseria polysaccharea ATCC
           43768]
 gi|296838029|gb|EFH21967.1| ATP-dependent DNA helicase RecG [Neisseria polysaccharea ATCC
           43768]
          Length = 680

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 237/666 (35%), Positives = 360/666 (54%), Gaps = 16/666 (2%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + D +G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADDSGSVLFLRFIHFYAGHQKQTAAGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
                  +    +  VY    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAEGGGL-AESLTPVYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLCRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +       + T PA +RL +DELLA Q+++ L R++        +   G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGSAAALRGNG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q + R +PF+ T +QE+ + ++  DM+Q + M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 VLTQALRRALPFALTDAQENVLAEVQTDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G Q  +MAP  ILA+QH+   K++ +   I V  + G++ +  + +A  ++A G   I 
Sbjct: 308 SGAQVAVMAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIA 367

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHALF D + ++ L L IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++ 
Sbjct: 368 VGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSF 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I + P GR PIKT ++   R  EV   +     +G++AYW+CP IEE +   
Sbjct: 428 FADLDVSVIDKLPPGRTPIKTRLVNNVRRTEVEGFVLNTCRKGRQAYWVCPLIEESETLQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  E    L       +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+DV 
Sbjct: 488 LQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++IE+AE  GLAQLHQLRGRVGRG   S C+LL+  PL + +  RL V+    DGF
Sbjct: 548 NAALMVIEHAERMGLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL  R  GE LG +QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V  
Sbjct: 608 EIARQDLNIRGPGEFLGARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEI--VEA 665

Query: 679 QSIRIL 684
              R L
Sbjct: 666 HLARWL 671


>gi|323466296|gb|ADX69983.1| DNA helicase RecG [Lactobacillus helveticus H10]
          Length = 679

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 214/681 (31%), Positives = 355/681 (52%), Gaps = 22/681 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M     N LFAP++  +GVG K +  L      G+       DLLFY P  + D      
Sbjct: 1   MNKMIENALFAPVTDLKGVGTKTAADL------GSLGIYSIYDLLFYFPFRY-DELQTLP 53

Query: 61  ISEISEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
           + +I + + V + G ++          K+      +      I + FF +    LK+   
Sbjct: 54  LDQIMDGQKVVLKGIVATEPFVSRFGYKKSRLSFKMRIDHDVIMVNFFNQ--PWLKSKIE 111

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G ++ + GK    +  +      +I     D     +  +Y +   +       +I  A
Sbjct: 112 IGEEVAIYGKYNVARQSLSAFK--FIAAKENDSG---MAPIYPVNRHVKQKKLVSLINLA 166

Query: 179 LS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
               L  + + + +++ +K    +  E    +H+P+ + +       +    + E    +
Sbjct: 167 TDGFLDQVRDIVPENIREKYRLLTDQEIIQKMHHPKNSTEANLA---KRSAIFREFFIFE 223

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + L L+     K+ G P N + K   ++  ++PF  +  Q+  + +I  DM    +M R+
Sbjct: 224 LQLALLANHDGKQAGYPKNYDLKEIAQLTSSLPFELSDDQKEVVNEIFADMHSSGQMRRL 283

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VA+ A+ AA+ AG Q  +M P  ILA QH++ I +  +   + V ++TG
Sbjct: 284 LQGDVGSGKTVVAVYAIFAAITAGYQVALMVPTEILATQHFKKIDELLRPLGVRVALLTG 343

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           N     RR+    +  G  +++IGTHAL Q+++ + KL LVI+DEQHRFGV QR  L  K
Sbjct: 344 NTKTLERREIYRELTDGTINVMIGTHALIQENVIFKKLGLVIIDEQHRFGVGQRQALINK 403

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P +L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +     +++  V ++++ 
Sbjct: 404 GDQPDILAMTATPIPRTLALTVYGDMTVSEIHHMPAGRKPIISSWKTSSQMKNVYQKMQD 463

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L +G + Y + P I E +  + ++  E    L   F    + ++HG+M    K+ +M +
Sbjct: 464 QLDQGFQIYAVTPLITESETLDLKNAEELHAKLSHDFPDQKVVLLHGQMPGPKKDEIMTA 523

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G   +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ + 
Sbjct: 524 FASGEINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGKTQSYCVFVA 583

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            P  + +   R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F +     + + L
Sbjct: 584 DPK-TDSGKARMKIIAATNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTL 642

Query: 657 EIARKDAKHILTQDPDLTSVR 677
            +A+K A+ ++ QDP L    
Sbjct: 643 VVAQKVARDLVQQDPKLADYP 663


>gi|300310559|ref|YP_003774651.1| TP-dependent DNA helicase RecG protein [Herbaspirillum seropedicae
           SmR1]
 gi|300073344|gb|ADJ62743.1| TP-dependent DNA helicase RecG protein [Herbaspirillum seropedicae
           SmR1]
          Length = 722

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 254/675 (37%), Positives = 371/675 (54%), Gaps = 27/675 (4%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI--SEERIVTITGYISQHSSFQ 83
            L+K+           +DL+ + P  + D      I+E      + V + G +      Q
Sbjct: 50  KLAKL------GLHNDMDLVLHLPLRYEDETSLMSIAEASMRGLQTVQVEG-VVSSCEVQ 102

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + RR   + + D +G++TL F        K +  EG ++ V G+++       MVHP Y
Sbjct: 103 FRPRRQLIVTVGDDSGQLTLRFLNFYGSQTKQM-AEGTRLRVRGELRHGFFGAEMVHPSY 161

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
              N       ++  VY    GLS    +K I  A+SRL    + +   +L   +  +  
Sbjct: 162 KVVNEGAPLPDVLTPVYPAGEGLSQAYLRKAIANAMSRLD-WSDTLPPSMLATLNLAAFE 220

Query: 204 EAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
            +  ++HNP    D     E + PA  R+ +DELLA Q++L   +   + +    + V G
Sbjct: 221 PSVRLLHNPPPDVDEHALIEKSHPAWIRMKFDELLAQQLSLKRAQAARRAKSARALPVTG 280

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           +I +++ R +PF  T +Q+  +++I  D+ Q   M R+LQGDVGSGKT+VA +A A A++
Sbjct: 281 RITEELTRLLPFQLTGAQQRVLEEIRADLRQSFPMQRLLQGDVGSGKTVVAALAAAQAID 340

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G QAV+MAP  ILA+QH+  I  + +   + V  ++G+  +  + +AL  I  G A ++
Sbjct: 341 SGCQAVLMAPTEILAEQHFRKIAAWMEPLDVGVAWLSGSQKKKEKTEALAHIESGAARLV 400

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK---------ATAPHVLLMTATP 430
           IGTHAL QD++Q+  L LVIVDEQHRFGV QRL L  K            PH L+M+ATP
Sbjct: 401 IGTHALIQDTVQFENLGLVIVDEQHRFGVGQRLALRNKSFNPADHDSPAVPHQLMMSATP 460

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +T   D+++S I E P GR PI T +I  NR DEVIER+     EGK+ YW+CP
Sbjct: 461 IPRTLAMTYYADLEVSVIDELPPGRSPIVTRVIDQNRRDEVIERVHAAALEGKQIYWVCP 520

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            IEE +    ++  +   +L        I ++HGRM  ++K+ VM+ F  G   LL+ATT
Sbjct: 521 LIEESEALQLQTATDTHAALSAALPDLQIGLVHGRMKPVEKQMVMEGFSRGAIHLLVATT 580

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S C+LLY  PL   +  RL+
Sbjct: 581 VIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSAASVCLLLYQGPLGGTAKQRLA 640

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            ++ T DGF IA  DL  R  GE LG +QSG      A       L+E AR  A+ +L  
Sbjct: 641 TMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLATDQWLVEKARDTAQALLQH 700

Query: 670 DPDLTSVRGQSIRIL 684
            PD+   R  + R L
Sbjct: 701 APDIVD-RHLA-RWL 713


>gi|310659145|ref|YP_003936866.1| recg [Clostridium sticklandii DSM 519]
 gi|308825923|emb|CBH21961.1| RecG [Clostridium sticklandii]
          Length = 685

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 234/686 (34%), Positives = 362/686 (52%), Gaps = 21/686 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +    G+G K      K             DLL ++P  + DR +  KI+++  E 
Sbjct: 5   LDLEIDIIPGIGPKKKTVYYK------RGIKTIKDLLMHYPMRYEDRRHFKKIADVHFEE 58

Query: 69  IVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            V I G I      + +K     +I + D T +  L  F      +++    GR I   G
Sbjct: 59  KVCIEGKIISVDVKKPKKNMVILRICIYDNTQKAFLTVFNN--PYIQSQLTIGRTIKAYG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP- 186
             K++     +  P   F ++      +I  VY L  GL  D   K I   L  L +   
Sbjct: 117 TAKRINGICNISAPEIDF-DNYSKKTGIIYPVYPLTRGLFNDEIIKSIKWILQSLNIKEL 175

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E++     Q+     + +A   IH P   KD      A+ RL +DE     I L  ++  
Sbjct: 176 EYLNSKYRQQLRLCELDDAIKNIHFP---KDPLLIKVAKFRLVFDEFFLLNIGLSSIKHG 232

Query: 247 FKKEIGIPINVEGK---IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
             KE GI      +     +  +  +PF  TK+Q   +++I+ DM+    M R++QGDVG
Sbjct: 233 LVKEPGIKHESSEETKSKIEAFVEELPFELTKAQSKVMQEIIDDMASDKPMQRLVQGDVG 292

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A+IA   A   G Q  +MAP  ILA+QHY       +NT   + ++TG+     
Sbjct: 293 SGKTVIAMIAAYYAYINGYQCALMAPTEILAKQHYNNFLDIFKNTNAEIRLLTGSTTAKS 352

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR-LKLTQKATAPH 422
           +R   E + +G   I+IGTHAL +D +++  L LVI DEQHRFGV+QR   L +      
Sbjct: 353 KRTVYEELLNGSCDIVIGTHALIEDKVKFNNLSLVITDEQHRFGVRQRSKLLLKNHLTVD 412

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+MTATPIPRTL     GD+DIS I + P+GRKPIKT        ++V +  K  ++ G
Sbjct: 413 MLVMTATPIPRTLAFILHGDLDISVIDQMPSGRKPIKTFASKKQEANKVYDFAKQEIALG 472

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540
           ++ Y +CP IEE +  + ++  E F  L E       +A++HG+M   +K+ +MD+F +G
Sbjct: 473 RQIYIVCPLIEESENLDIQAANELFEKLSESVFKGYKLALLHGKMKAQEKQEIMDAFSSG 532

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +LI+TTVIEVG++V ++S++II++A+ FGL+QLHQLRGRVGRGE  S C+LLY    
Sbjct: 533 RIDILISTTVIEVGVNVPNSSVMIIQDAQRFGLSQLHQLRGRVGRGEYQSYCVLLYEGKN 592

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
                 R+ +++N+ DGF I+++DL+ R  GE  G +Q G+  F +A    H S+L +A+
Sbjct: 593 KYI-EQRMKIMQNSNDGFEISQKDLELRGPGEYFGTRQHGLDNFKLADISKHISILNLAK 651

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLY 686
             A  ++++DP+L +   ++I+I L 
Sbjct: 652 DFADEVMSEDPELKNEENKAIKIELD 677


>gi|78186238|ref|YP_374281.1| ATP-dependent DNA helicase RecG [Chlorobium luteolum DSM 273]
 gi|78166140|gb|ABB23238.1| ATP-dependent DNA helicase RecG [Chlorobium luteolum DSM 273]
          Length = 703

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 240/711 (33%), Positives = 375/711 (52%), Gaps = 33/711 (4%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           +PLS+ +G+G K    L       +A    F DL    P  ++DR     + ++      
Sbjct: 5   SPLSSLKGMGPKKVAIL------HDAGLVSFEDLFELFPRRYLDRRVMKPVRDLRAGETA 58

Query: 71  TITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           T+ G I+  S     + R  ++  L+DG+G + L +F R           G  + V GK+
Sbjct: 59  TVVGTITAASVDAGQRGRSRFRATLSDGSGTLELTWF-RGVRYFARAVVPGETLAVHGKV 117

Query: 130 KKLKNRIIMVHPHYIFHNSQD----------VNFPLIEAVYSLPT-----GLSVDLFKKI 174
                R  M HP +    S             N   I  +Y         GL     + +
Sbjct: 118 GYFGARAQMQHPDFDRLGSDRHEDGGSDLSLYNTGRIIPLYPTTEAMKLSGLGSRQLRSL 177

Query: 175 IVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
           + +A    P    E + + +L   S   +AEA+  IH P      E    A  R+ + EL
Sbjct: 178 MAQAFELQPPGARENLSRSILDSNSLMPLAEAYREIHFPSSP---ERLGIAERRMKWTEL 234

Query: 234 LAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
              Q+   L R   +           G+   ++  ++P+  T +Q+ AI++I +D+   +
Sbjct: 235 FYAQLLFALRRHTARHLRQAAVFTHSGEYTSRLYASLPYELTAAQKDAIREIYRDLRSGS 294

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R+LQGDVGSGKT VA+ +MA A +   Q+V MAP  ILA QH+  ++++ +   + V
Sbjct: 295 PMQRLLQGDVGSGKTAVAMFSMALAADNKLQSVFMAPTEILAVQHWLSMRRFFEPLGLEV 354

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            + +G  P+  R + L R+  G  H+ +GTHAL +D+++Y +L LVI+DEQHRFGV QR 
Sbjct: 355 ALFSGRQPKRLREELLLRLREGDVHVAVGTHALIEDAVRYRELGLVIIDEQHRFGVLQRK 414

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L +KA+ PHVLLMTATPIPRTL +   GD+D+S I + PAGR+P+KT++ P +   +V 
Sbjct: 415 ALQEKASNPHVLLMTATPIPRTLTMGVFGDLDVSVIRQMPAGRRPVKTIVRPESEQAKVH 474

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDK 530
           + L+  +++G + Y + P +E  ++++ ++ VE F  L         + +IHG+MS  +K
Sbjct: 475 QFLRREIADGHQGYIVYPLVEASEKTDLQAAVESFGELSGAVFPDLRLGLIHGQMSPEEK 534

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + VM  F+ G   +L+ TTVIEVG+DV +A++II+E+AE FGLAQLHQLRGRVGRG+  S
Sbjct: 535 DGVMQRFRTGELHILVGTTVIEVGVDVPNATVIIVEHAERFGLAQLHQLRGRVGRGQHPS 594

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQP 649
            C LLY   L+ +   RL  +++T DGF+I+E D + R  G +LG +QSG +    IA  
Sbjct: 595 HCFLLYG-KLTGDGRERLQAMESTSDGFVISEMDARIRGAGNVLGKEQSGSLSGLKIADL 653

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            L   +++ AR  A  ++  D  L     + +R   Y+ +Y         G
Sbjct: 654 SLDFDIMQSARSAAFALVEADSRLALPENEPVRRW-YMDRYLGRQTLADIG 703


>gi|260101410|ref|ZP_05751647.1| DNA helicase RecG [Lactobacillus helveticus DSM 20075]
 gi|260084750|gb|EEW68870.1| DNA helicase RecG [Lactobacillus helveticus DSM 20075]
          Length = 679

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 214/681 (31%), Positives = 357/681 (52%), Gaps = 22/681 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M     N LFAP++  +GVG K +  L      G+       DLLFY P  + D      
Sbjct: 1   MNKMIENALFAPVTDLKGVGTKTAADL------GSLGIYSIYDLLFYFPFRY-DELQTLP 53

Query: 61  ISEISEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
           + +I + + V + G+++          K+      +      I + FF +    LK+   
Sbjct: 54  LDQIMDGQKVVLKGFVATEPFVSRFGYKKSRLSFKMRIDHDVIMVNFFNQ--PWLKSKIE 111

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G ++ + GK    +  +      +I     D     +  +Y +   +       +I  A
Sbjct: 112 IGEEVAIYGKYNVARQSLSAFK--FIAAKENDSG---MAPIYPVNRHVKQKKLVSLINLA 166

Query: 179 LS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           +   L  + + + +++ +K    +  E    +H+P+ + +       +    + E    +
Sbjct: 167 IDVFLDQVRDIVPENIREKYRLLTDQEIIQKMHHPKNSTEANLA---KRSAIFREFFIFE 223

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + L L+     K+ G P N + K   ++  ++PF  +  Q+  + +I  DM    +M R+
Sbjct: 224 LQLALLANHDGKQAGYPKNYDLKEIAQLTSSLPFELSDDQKEVVNEIFADMHSSGQMRRL 283

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VA+ A+ AA+ AG Q  +M P  ILA QH++ I +  +   + V ++TG
Sbjct: 284 LQGDVGSGKTVVAVYAIFAAITAGYQVALMVPTEILATQHFKKIDELLRPLGVRVALLTG 343

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           N     RR+    +  G  +++IGTHAL Q+++ + KL LVI+DEQHRFGV QR  L  K
Sbjct: 344 NTKTLERREIYRELMDGTINVMIGTHALIQENVIFKKLGLVIIDEQHRFGVGQRQALINK 403

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P +L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +      ++ +V ++++ 
Sbjct: 404 GDQPDILAMTATPIPRTLALTVYGDMTVSEIHHMPAGRKPIISSWKTSTQMKDVYQKMQD 463

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L +G + Y + P I E +  + ++  E    L   F    + ++HG+M    K+ +M +
Sbjct: 464 QLDQGFQIYAVTPLITESETLDLKNAEELHAKLSHDFPDQKVVLLHGQMPGPKKDEIMIA 523

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G   +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ + 
Sbjct: 524 FASGEINILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGKTQSYCVFVA 583

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            P  + +   R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F +     + + L
Sbjct: 584 DPK-TDSGKARMKIIAATNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTL 642

Query: 657 EIARKDAKHILTQDPDLTSVR 677
            +A+K A+ ++ QDP L    
Sbjct: 643 VVAQKVARDLVQQDPKLADYP 663


>gi|257870553|ref|ZP_05650206.1| ATP-dependent DNA helicase RecG [Enterococcus gallinarum EG2]
 gi|257804717|gb|EEV33539.1| ATP-dependent DNA helicase RecG [Enterococcus gallinarum EG2]
          Length = 681

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 221/700 (31%), Positives = 378/700 (54%), Gaps = 27/700 (3%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR   +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R +
Sbjct: 1   MRREEM--LDQPITVLSGVGEKRAKDLAAL------GIQTIEDLLRYYPFRYEDIQER-Q 51

Query: 61  ISEISEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
           ++EI ++  VTI G +   +       K+   +  +        + FF +    LK+   
Sbjct: 52  LNEIQDQEKVTIKGIVVSPAVVNRFGYKKSRLQFRMMQDHDVFNVSFFNQ--PYLKDKVV 109

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
              +I V GK    +  +  +    I  + +  +F     +Y +   +   +   +I +A
Sbjct: 110 LSEEIAVYGKWDAKRKSLAGMK---ILGSKKPGDFA---PIYHVNKSVRQSVLVDLIRQA 163

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
                  + E +   L +K        A   +H P   KD + +  A+ R+ ++E    Q
Sbjct: 164 FESYGDQIEEILPLTLTEKYRLLDRQTAMRAMHFP---KDPQESHQAKRRIIFEEFFLFQ 220

Query: 238 IALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + +  ++  +  ++ G+ I+ + +  +   + +PF  T +Q+    +I  D+     M R
Sbjct: 221 MQIQGLKISEKAEKNGLAIDYDVQRLKAFTQTLPFELTAAQKRVTNEICHDLKSPQHMQR 280

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VA IA+ A + AG Q  +M P  ILAQQH E + +     ++   ++T
Sbjct: 281 LLQGDVGSGKTVVAAIALYATMTAGFQGALMVPTEILAQQHLESLNQLFDPLEVTTALLT 340

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+     RR  LE++A G+  I++GTHAL Q+ + + +L LVI DEQHRFGV QR  L +
Sbjct: 341 GSTKTKERRVILEQLAAGEIDIVVGTHALIQEGVNFARLGLVITDEQHRFGVNQRKILRE 400

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K   P VL MTATPIPRTL +T+ G++D+S I E PAGR P++T  +   +++ V++  +
Sbjct: 401 KGYLPDVLFMTATPIPRTLAITAYGEMDVSIIDEMPAGRIPVETRWVRPPQLESVLDWAR 460

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVM 534
             L++G + Y ICP IEE +  + ++  E +  L  +F     + I+HG+M +I+K+ +M
Sbjct: 461 QELAKGHQMYVICPLIEESEMLDVKNATEIYEQLQAYFAPNYQVGILHGKMKNIEKDEIM 520

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + FK+   ++L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL
Sbjct: 521 EEFKDNQLQILVSTTVIEVGVNVPNATVMLIIDADRFGLAQLHQLRGRVGRGADASYCIL 580

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           + +P  ++    R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F  A       
Sbjct: 581 VANPK-NETGIERMKIMTETTNGFVVSEKDLQLRGPGEVFGNRQSGLPEFAAADLVADAH 639

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           +LE+A+ +A  I  +         Q++   L   + +  F
Sbjct: 640 ILEVAQVEATQIWQKHQWQILPEYQALADYLAAEKRDNQF 679


>gi|228474943|ref|ZP_04059671.1| ATP-dependent DNA helicase RecG [Staphylococcus hominis SK119]
 gi|228270928|gb|EEK12316.1| ATP-dependent DNA helicase RecG [Staphylococcus hominis SK119]
          Length = 683

 Score =  541 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 225/689 (32%), Positives = 376/689 (54%), Gaps = 22/689 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL + +G+G K    L ++      N     DL+ Y P+ + D      ++   ++  VT
Sbjct: 12  PLQSIKGLGPKRIALLHEL------NIHTIEDLVLYLPTRYEDNT-VVDLNLAEDQSTVT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I    +     R   K+ ++     I +   +     LK      + +T+ GK  +
Sbjct: 65  VAGEIYSVPTVAFFGRNKSKLTVHLMIDNIAVKCVFFNQPYLKKKIELNQTVTIKGKWNR 124

Query: 132 LKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            K     ++ + IF N    +     +E VY L  G+     + +I ++L+ +  + EWI
Sbjct: 125 AK---QEINGNRIFFNDTHTSTEEVRLEPVYRLKEGIKQKQMRDMIHQSLNDV-TIHEWI 180

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFK 248
            ++L Q+     +      +H P   KD +    AR   A+ EL   ++ +  L R +  
Sbjct: 181 TEELRQRYKLELLDYTIKTLHLP---KDKQALMRARRTYAFTELFMFELRMQWLNRLEKA 237

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +  I IN +    +  ++++PF  T +Q+S++ +I +D+    RM R+LQGDVGSGKT+
Sbjct: 238 SDEAIEINYDINKVKSFIQSLPFELTDAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTV 297

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA I M A   AG Q+ +M P  ILA+QH   + +   +  + V ++TG++    RR  L
Sbjct: 298 VAAICMYALKTAGYQSALMVPTEILAEQHANSLTELFGD-HMNVALLTGSVKGKKRRVLL 356

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E++ +G    +IGTHAL QD +++  + LVI DEQHRFGV QR  L +K    +VL MTA
Sbjct: 357 EQLENGTIDCLIGTHALIQDDVKFKNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTA 416

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY I
Sbjct: 417 TPIPRTLAISVFGEMDVSSIKQLPKGRKPIITHWAKHEQYDQVLAQMTSELKKGRQAYVI 476

Query: 489 CPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IE  +   + ++VVE F SL E +    + ++HG+MS  +K+ VM  F N    +L+
Sbjct: 477 CPLIESSEHLEDVQNVVELFESLQEFYGKTHVGLLHGKMSADEKDDVMARFSNHDIDILV 536

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    
Sbjct: 537 STTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIE 595

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R++++  T DGF ++E DL+ R  G+  G+KQSG+P F++A       +LE+AR +A  +
Sbjct: 596 RMTIMTQTTDGFELSEYDLEMRGPGDFFGVKQSGLPDFMVANIVEDYRMLEVARDEAAEL 655

Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           +    +  + + + +R  +  +  N +F 
Sbjct: 656 IQS-GEFFTEKYERLRAFINDHLLNMSFD 683


>gi|160901684|ref|YP_001567265.1| ATP-dependent DNA helicase RecG [Petrotoga mobilis SJ95]
 gi|160359328|gb|ABX30942.1| ATP-dependent DNA helicase RecG [Petrotoga mobilis SJ95]
          Length = 781

 Score =  541 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 213/697 (30%), Positives = 375/697 (53%), Gaps = 18/697 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L PL   +   + VG K +L L+K+            D  +Y P  + DR    KI    
Sbjct: 99  LAPL-TDIKYIKKVGTKRALILNKL------GIFSLKDFFYYPPRDYEDRRKVVKIFNAK 151

Query: 66  EERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           E+  V I G + +    ++ K    Y   + D +G I + FF +  + +K+    G K  
Sbjct: 152 EDEKVVIIGNVVKSEEVKINKGLTIYNFSVEDDSGVIIVTFFNQ--DYVKSYLKRGVKSA 209

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
             GKI+       M  P +    S +     I  VY L  G+     ++I  EA+ +   
Sbjct: 210 FYGKIEYSYGMKQMKSPDFQVIESDEDFKSEILPVYPLTFGIFQTTMRRIAKEAIQQTYF 269

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E++ ++ +Q+ +   + +    IH P      E +      L Y+E +  ++A++ ++
Sbjct: 270 LEEFLPEEFVQEFNLLDLKKRIKGIHFPLSIYHKERS---WYSLKYEEAILFELAMIYLK 326

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K+        ++G++ +K L  + F  T++Q+ + ++I +D+     M R+LQGDVG
Sbjct: 327 LKMKEMKKGETKEIKGELTKKFLNTLNFELTQAQKRSYEEIRKDLISPYPMNRLLQGDVG 386

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+V+ +A+    EAG QA +M P  +LA+Q ++ + K  +   + + ++TG+  ++ 
Sbjct: 387 SGKTVVSELAIIDVCEAGYQAAVMNPTSVLAKQQFKKLSKDLEPLGLKIVLLTGDTKESD 446

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +    E++  G+  +++GTHA+ Q  +++ KL LV++DEQHRFGV QRL+L +K   P +
Sbjct: 447 KILIKEKLKLGEIDVVVGTHAIIQQDVEFKKLGLVVIDEQHRFGVNQRLELIKKGNHPDI 506

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL +T  GD+D+S I E P GR+PIKT++I  +    + E +K  L +G 
Sbjct: 507 LVMTATPIPRTLAMTFYGDLDVSLIDEMPKGRRPIKTILIAESNRKSLYEFVKEELDQGN 566

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + +++ P IEE +    ++ +  +  L + F    + ++HGR+S  +K  VMD F     
Sbjct: 567 QVFFVYPLIEESEALELKNAISMYEELSKVFEEYKVGLLHGRLSPSEKNDVMDKFVQKEY 626

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L++T+V+EVGID+ DA++++IE+ + FGL+QLHQLRGRVGR ++ S C L+     + 
Sbjct: 627 DILVSTSVVEVGIDIPDATVMVIEHPDRFGLSQLHQLRGRVGRSDKQSYCFLVIDDDANN 686

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
              ++++    T DGF +AE DLK R  G+  G++Q G+P+F         +++E +RK 
Sbjct: 687 EIKSKMNSFSKTLDGFEVAEIDLKWRGPGKFFGVEQHGIPEFKFLDLVEDINIIENSRKK 746

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
            +  L      +  R  +++  L   +Y ++   +  
Sbjct: 747 VERFLAT--IQSFDRYPNLKHELQ-TRYGDSIHLVNV 780


>gi|226313294|ref|YP_002773188.1| ATP-dependent DNA helicase RecG [Brevibacillus brevis NBRC 100599]
 gi|226096242|dbj|BAH44684.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599]
          Length = 684

 Score =  541 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 232/681 (34%), Positives = 386/681 (56%), Gaps = 19/681 (2%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
            +P+S   GVG++ +   + +            DLL Y PS + D   R  ++E+ +   
Sbjct: 6   QSPVSLLHGVGEERAKAFAGL------GINSIGDLLEYFPSRYEDYRVR-DLTEVKDGER 58

Query: 70  VTITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           VT+ G +    S +   +R  ++   +      +T ++F +    +K+    G++I VTG
Sbjct: 59  VTLAGTVYGEPSVRFYGKRKSRLSVKVVMDRVVVTAVWFNQ--TFVKSRLSPGKEILVTG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLP 186
           K  K K +I +        + +      +  VY L   ++  L +K I  AL +    +P
Sbjct: 117 KWDKHKLQITVSEMT-EVDSERATKRGELAPVYPLGGDVTHTLLRKTIQLALRQYGKEIP 175

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245
           E +  D++++        AF+ IH P  A+D      AR R+ ++EL   Q+ +  +RK 
Sbjct: 176 EILPADIVERYRLMPRIHAFHSIHFPENAED---GRQARRRIMFEELFLFQLKMQTLRKI 232

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             ++  G+ + +  +  ++ ++ +PF  T +Q+  +K+IL DM   + M R+LQGDVGSG
Sbjct: 233 NRQQTEGVALAIPMEEVREFVKGLPFPLTDAQKRVVKEILDDMRAPHAMNRLLQGDVGSG 292

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA IA+ AAV+AG Q  +M P  ILA+QH + + K   +  I V +++G++    RR
Sbjct: 293 KTVVAAIALIAAVKAGYQGALMVPTEILAEQHVQSLTKLLSDYGIQVALLSGSLTAKRRR 352

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + +  +  G   +++GTHAL Q+ + + +L LVI DEQHRFGV+QR  L  K  +P VL 
Sbjct: 353 EVIGSLQMGLIDVVVGTHALIQEDVFFSRLGLVITDEQHRFGVEQRRILRNKGLSPDVLF 412

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ GD+D+S I + PAGRKPI+T     ++   V+E+++  L +G++A
Sbjct: 413 MTATPIPRTLAITAFGDMDVSTIDQMPAGRKPIETTWKKHDQFPAVLEQMRDELRKGRQA 472

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           Y ICP IEE ++ + ++ ++    L   F    + ++HGR+   +K++VM +F      +
Sbjct: 473 YVICPLIEESEKLDVQNAIDVHAQLTHIFPEFGVGLMHGRLPAKEKDAVMQAFLAAEHAV 532

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVG++V +A+ ++I +AE FGLAQLHQLRGRVGRG E S C+L+  P  S+  
Sbjct: 533 LVSTTVVEVGVNVPNATYMVIYDAERFGLAQLHQLRGRVGRGSEQSYCVLIADPK-SEIG 591

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ V+  T DGF +++ DL+ R  G+  G KQSG+P+F +A        LE+AR++  
Sbjct: 592 KERMRVMCETTDGFELSQRDLELRGPGDFFGTKQSGLPEFKVADLLSDYKALEVARQETV 651

Query: 665 HILTQDPDLTSVRGQSIRILL 685
            ++ +D      +   +R  L
Sbjct: 652 KLVAEDSFWRDEKYHWLRDYL 672


>gi|269837932|ref|YP_003320160.1| ATP-dependent DNA helicase RecG [Sphaerobacter thermophilus DSM
           20745]
 gi|269787195|gb|ACZ39338.1| ATP-dependent DNA helicase RecG [Sphaerobacter thermophilus DSM
           20745]
          Length = 824

 Score =  541 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 218/690 (31%), Positives = 360/690 (52%), Gaps = 23/690 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI-SEISE 66
            L  P++T  GVG + +  L  +            DLL+  P    D      I S +  
Sbjct: 140 ALTDPVTTLPGVGAQRAKQLEAL------GVRTVEDLLYLTPRRHKDYSRIEPIGSSLFF 193

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
            R  TI G +      + +  +   +  + D TG +  ++F      L      G  I V
Sbjct: 194 NRECTIKGTVVSIDQQRTRTGKTMVVAEIADDTGSVQAIWFN---PYLARQLHPGLPIAV 250

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PV 184
           +G+I++ +  +++ +P +   +++ ++   +  +Y L  GL     + +   AL     +
Sbjct: 251 SGRIERQRGTLVLRNPEWELLDAEMLHTGRLVPIYPLTRGLYQKQVRTLTRMALDAAAHL 310

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + + + +++ Q+     +A+A   +H P    D      AR RLA+DE L  QI L+  +
Sbjct: 311 IADPLPEEIRQRHGLLPLAQALEAVHYPDSEAD---ERAARRRLAFDEFLVLQIGLVQRK 367

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            +++ + G    ++ ++       +PF+ T +Q  A+ +IL DM+      R+LQGDVGS
Sbjct: 368 VEWQAQTGHAFRIDEELLATFEDRLPFTLTAAQSRALGEILADMASPRPASRLLQGDVGS 427

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ----IIVEIITGNMP 360
           GKT+VA  A   AV  G QA I+AP  ILA+QH                  + ++TG+ P
Sbjct: 428 GKTVVAAAAALVAVADGFQAAILAPTEILAEQHARNFASLYDVLPEERRPRLALLTGSTP 487

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R +    +  G   I+IGTHA+ ++ +++ +L L ++DEQHRFGV QR +L  K   
Sbjct: 488 AGEREEIDAGLRSGTIDILIGTHAILEERVEFARLGLAVIDEQHRFGVVQRARLRAKGYN 547

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL+MTATPIPR+L L   GD+D+S I E P GR+ I T  I  +R  +    ++  + 
Sbjct: 548 PDVLVMTATPIPRSLALVLHGDLDVSIIDELPPGRQKIATHWIEGDRRPDAYRFIRKEVE 607

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538
            G++A+ I P +EE +  + R+    +  L         + ++HGRM   +K+++M +F+
Sbjct: 608 AGRQAFIIYPLVEESEAIDARAATAEYERLSTEVFPDLRLGLLHGRMRPAEKDAIMTAFR 667

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +    +L++T+V+EVGIDV +A++++IE A+ FGLAQLHQ RGRVGRG   S CIL+   
Sbjct: 668 DHEIDILVSTSVVEVGIDVPNATVMLIEGADRFGLAQLHQFRGRVGRGAARSVCILV-AD 726

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            +S+    RL+ L  T+DGF +AE DL+ R  GE  G +QSG+P    A        L+ 
Sbjct: 727 DVSEEGQRRLNALVETQDGFRLAEIDLEIRGPGEFFGTRQSGLPDLRFASL-GDLGTLQR 785

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLY 688
           AR++A  IL+ DP L+    +++R  +  +
Sbjct: 786 AREEAHRILSADPTLSQPIHRALRERVDRF 815


>gi|318041336|ref|ZP_07973292.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CB0101]
          Length = 805

 Score =  541 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 235/690 (34%), Positives = 373/690 (54%), Gaps = 29/690 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             PLS  +GVG K +  L+ +      +     DL+ Y+P  ++D     +I+ +   R 
Sbjct: 109 DTPLSEIKGVGPKSATRLAAL------DLWVARDLVRYYPRDYLDYSNLVRIAALEPGRT 162

Query: 70  VTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVFF 118
            TI   + +  SF   +     IL   L D TG I +  F+              +  + 
Sbjct: 163 ATIVATVRRSHSFTSPRNPNLSILELQLADITGRIRISKFFAGKRFSSPAWLKAQQRQYP 222

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFKK 173
            G  + V+G +K+         P      S     Q      +  VY L  GLS D  + 
Sbjct: 223 TGATVAVSGLVKETPYGPAFQDPLMEVLASPHAPVQSEQIGRLLPVYGLTEGLSADRLRA 282

Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
           ++   L+     P+ +   + Q++   ++  A   IH P         + AR RL +DE 
Sbjct: 283 LVRPLLAAAQGWPDPLPASIQQQEQLVNLGTALTQIHAPSDQASL---AKARRRLVFDEF 339

Query: 234 LAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           L  Q+ LL  R+Q        +N   G +    L  +PF  T +Q+  + +I  D+ ++ 
Sbjct: 340 LYLQLGLLQRRRQLTSRPAPALNNPSGTLLPAFLELLPFPLTGAQQRVLAEIRADLERQE 399

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++QGDVGSGKT+VA+ A+  A+EAG Q  +MAP  +LA+QHY  + ++     +  
Sbjct: 400 PMARLVQGDVGSGKTVVAIAALLTAIEAGCQGALMAPTEVLAEQHYRKLCEWLPQLHVSC 459

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+ P   RR+ L  +A+G   +++GTHAL +D +Q+ +L LV+VDEQHRFGV QR 
Sbjct: 460 ALLTGSTPARRRRELLADLANGTLKMLVGTHALLEDPVQFARLGLVVVDEQHRFGVHQRN 519

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           +L  K   PH+L MTATPIPRTL L+  GD+++S+I E P GR PI+T ++     ++  
Sbjct: 520 RLLDKGLQPHLLTMTATPIPRTLALSLHGDLEVSQIDELPPGRTPIRTALLSAAEREQAY 579

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDK 530
           + ++  ++ G++AY + P +EE ++ + RS VE    L E       + ++HGRM+  DK
Sbjct: 580 QLIREQVALGQRAYVVLPLVEESEKLDLRSAVEVHQQLSEQIFPDLQVGLLHGRMASADK 639

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           ++ + +F  G  ++L++TTV+EVG+DV +AS+++IE+A+ FGLAQLHQLRGRVGRG   S
Sbjct: 640 QAAIGAFAAGDTQVLVSTTVVEVGVDVPEASVMVIEHADRFGLAQLHQLRGRVGRGAAAS 699

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C L+ +   +  +  RL VL ++ DGF IAE DL+ R  G++LG +QSG+P   +A   
Sbjct: 700 FCQLI-NDSRNALARQRLEVLVHSTDGFEIAEMDLRLRGPGQVLGTRQSGLPDLALASLT 758

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
               +LE AR  A+ I+ +DP L +    +
Sbjct: 759 DDGDVLEQARLVAQQIMERDPGLEAHPSLA 788


>gi|314936610|ref|ZP_07843957.1| ATP-dependent DNA helicase RecG [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655229|gb|EFS18974.1| ATP-dependent DNA helicase RecG [Staphylococcus hominis subsp.
           hominis C80]
          Length = 683

 Score =  541 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 226/689 (32%), Positives = 376/689 (54%), Gaps = 22/689 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL + +G+G K    L ++      N     DL+ Y P+ + D      ++   ++  VT
Sbjct: 12  PLQSIKGLGPKRIALLHEL------NIHTIEDLVLYLPTRYEDNT-VVDLNLAEDQSTVT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I    +     R   K+ ++     I +   +     LK      + +T+ GK  +
Sbjct: 65  VAGEIYSVPTVAFFGRNKSKLTVHLMIDNIAVKCVFFNQPYLKKKIELNQTVTIKGKWNR 124

Query: 132 LKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            K     ++ + IF N    +     +E VY L  G+     + +I ++L+ +  + EWI
Sbjct: 125 AK---QEINGNRIFFNDTHTSTEEVRLEPVYRLKEGIKQKQMRDMIHQSLNDV-TIHEWI 180

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFK 248
            ++L Q+     +      +H P   KD +    AR   A+ EL   ++ +  L R +  
Sbjct: 181 TEELRQRYKLELLDYTIKTLHLP---KDKQALMRARRTYAFTELFMFELRMQWLNRLEKA 237

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +  I IN +    +  ++++PF  T +Q+S++ +I +D+    RM R+LQGDVGSGKT+
Sbjct: 238 SDEAIEINYDINKVKSFIQSLPFELTDAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTV 297

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA I M A   AG Q+ +M P  ILA+QH   + +   +  + V ++TG++    RR  L
Sbjct: 298 VAAICMYALKTAGYQSALMVPTEILAEQHANSLTELFGD-HMNVALLTGSVKGKKRRVLL 356

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E++ +G    +IGTHAL QD +Q+  + LVI DEQHRFGV QR  L +K    +VL MTA
Sbjct: 357 EQLENGTIDCLIGTHALIQDDVQFKNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTA 416

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY I
Sbjct: 417 TPIPRTLAISVFGEMDVSSIKQLPKGRKPIITHWAKHEQYDQVLAQMTSELKKGRQAYVI 476

Query: 489 CPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IE  +   + ++VVE F SL E +    + ++HG+MS  +K+ VM  F N    +L+
Sbjct: 477 CPLIESSEHLEDVQNVVELFESLQEFYGKTHVGLLHGKMSADEKDDVMARFSNHDIDILV 536

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    
Sbjct: 537 STTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIE 595

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R++++  T DGF ++E DL+ R  G+  G+KQSG+P F++A       +LE+AR +A  +
Sbjct: 596 RMTIMTQTTDGFELSEYDLEMRGPGDFFGVKQSGLPDFMVANIVEDYRMLEVARDEAAEL 655

Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           +    +  + + + +R  +  +  N +F 
Sbjct: 656 IQS-GEFFTEKYERLRAFINDHLLNMSFD 683


>gi|290967865|ref|ZP_06559416.1| ATP-dependent DNA helicase RecG [Megasphaera genomosp. type_1 str.
           28L]
 gi|290782105|gb|EFD94682.1| ATP-dependent DNA helicase RecG [Megasphaera genomosp. type_1 str.
           28L]
          Length = 678

 Score =  541 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 243/687 (35%), Positives = 371/687 (54%), Gaps = 24/687 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS--EISEER 68
             L   +G+G +    L+++            DLL Y P ++ DR Y   ++   +    
Sbjct: 3   TDLREIKGIGVRKEKLLNRL------GIFTIFDLLQYFPRTYEDRRYISPMATISLPRTE 56

Query: 69  IVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            V I GY+ +      ++     K+ + D +GE  L++F +     K +F   +++TV G
Sbjct: 57  PVLICGYVQRIQEVHPRRGLSILKVGIADDSGEAELIWFNQ--PFKKKLFTVHQQLTVFG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--- 184
           K++    +  M +P         V    +E VY L  GL     +  I +AL+ +     
Sbjct: 115 KMEAAYGKRQMNNPDI---EEGCVTGTALEPVYGLTEGLRQKELRNFIRDALNYMEEHSG 171

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E  + ++       S+ EA+  IH P      E    AR +LA+ EL   Q+ L L R
Sbjct: 172 LTEA-DTEVPFLYPTMSLYEAYRTIHFPDS---LEAREKARRQLAFQELFDLQLGLALRR 227

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +  KK+ GI     G + Q +++N+PF  T+ Q +A  DI  DM  +  M R++QGDVGS
Sbjct: 228 RGEKKKAGIKCAPNGGLLQAVVKNLPFLLTQGQTNAFLDIQSDMESEVPMQRLVQGDVGS 287

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT VA +A+A  VE G Q  +MAP  ILA QH E + +  Q   I   ++TG +    R
Sbjct: 288 GKTAVAALALAKIVENGYQGALMAPTEILATQHAEELARLFQGIPIKTALLTGRIGAKER 347

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           ++ L+ IA G   ++IGTHAL Q+ +Q+  L LV+ DEQHRFGV+QR  L +K  APH L
Sbjct: 348 QRVLQEIADGSIQVVIGTHALLQEDVQFAHLGLVVTDEQHRFGVKQRAALQEKGRAPHGL 407

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            MTATPIPRTL L+  GD+D+S I E P GRKP+KT  +       +   +K ++  G++
Sbjct: 408 FMTATPIPRTLALSVYGDLDVSSIRELPPGRKPVKTYAVKETMRARIYAFMKKLICAGQQ 467

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP +EE    + ++    +  L E         ++HGRM   +KE+VM +F+    
Sbjct: 468 CYVVCPLVEESAALDLQAATGLYEMLKEKVFKEFHCGLVHGRMKGKEKETVMKAFQEKRI 527

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT+VIEVG++V +A++++I+ AE FGLAQLHQLRGRVGRG+  + CILL H   ++
Sbjct: 528 DILVATSVIEVGVNVPNATLMLIDGAERFGLAQLHQLRGRVGRGDLQAYCILLAHGG-TE 586

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL  +++ +DGF++AE+DL  R  G++ G  Q G+P F  A       LL  AR+ 
Sbjct: 587 ETRQRLHWMESVQDGFVLAEKDLLLRGSGKLFGYMQHGLPDFKAADILKDVQLLSQAREA 646

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQ 689
           A+  +  +PD T VR +  R     + 
Sbjct: 647 AQTYMAVEPDETRVRARLKRRFGAAFD 673


>gi|315187033|gb|EFU20790.1| ATP-dependent DNA helicase RecG [Spirochaeta thermophila DSM 6578]
          Length = 683

 Score =  541 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 235/693 (33%), Positives = 354/693 (51%), Gaps = 14/693 (2%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            L  + AP++T  G+G K +    K+            DLL ++P  + DR     ++E 
Sbjct: 2   LLEDISAPITTLAGIGGKTARHFHKL------GIRSVGDLLQHYPRDYEDRSTFTSLAEA 55

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
                 T    I+             +I +NDGT    L+ F R    L   F  G K+ 
Sbjct: 56  HATGKATTVATITLMDYIGKPSNPVLRIFINDGTELAALVCFGRN--FLSRKFSPGMKVF 113

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           V+G+ +    ++         +      F  I  +Y     L   + +  +  AL +   
Sbjct: 114 VSGQFEMRYGKLQSTRFIIEPYTESPKEFGKILPIYPTTEDLPQTILRSAVEAALRQYLP 173

Query: 185 LPEWIEKDLL-QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           L +      L   +S P + EA   IH P    D +  + AR RL Y EL   Q+ ++  
Sbjct: 174 LLDDPLPPSLLAARSLPPLPEALAAIHFPP---DRDALTRARTRLIYQELFFLQVIVVRA 230

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
             + K ++  P++    + +++ R++PF  T  QE  +++I  D +    M R+LQGDVG
Sbjct: 231 AMKRKTQLQAPVHFPRTLQERLRRSLPFPLTPDQEKVLEEIYADTTSPRPMARLLQGDVG 290

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVAL+A    +EAG Q   M P  +LA QH E          +   ++ G +  A 
Sbjct: 291 SGKTLVALLAALPYIEAGHQVAFMVPTELLALQHAETAHTLLSPFGVRTALLAGTLQPAA 350

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR  L  I  G+  ++IGTH LF D + Y  L L I+DEQH+FGV QR +L +KA+ P +
Sbjct: 351 RRTLLSAILRGEVDLVIGTHTLFSDDVAYRNLRLAIIDEQHKFGVSQRARLLEKASHPDL 410

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           LLMTATPIPRT+ LT  GD+D+S I   P GRKP++T +  + + ++V   ++  L +G 
Sbjct: 411 LLMTATPIPRTMALTLYGDMDMSTIKTMPPGRKPVRTHLAVLGKEEKVYTWVEKELEKGH 470

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +AY++ P I E ++   R+       L   +    +A+IH R+ D +KE +M  F  G  
Sbjct: 471 QAYFVYPLIGESEKLELRNAESMVEFLRRRYPRWKVALIHSRIPDEEKERIMREFMQGKI 530

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+AT+VIEVG++V  A+ I+IE+AE FGLA LHQLRGRVGR +  S   L+Y P L++
Sbjct: 531 RILVATSVIEVGVNVPTATCIVIEHAERFGLATLHQLRGRVGRSDRQSYAFLVYSPDLTE 590

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARK 661
            +  RL  +K T DGFLIAE+DL+ R  G++L G  Q+G  +  IA       L+   RK
Sbjct: 591 EAKARLRTMKETTDGFLIAEKDLEIRGPGDLLDGTIQAGHLRLRIAHLTRDAPLMHEVRK 650

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           D + +L +DP L       IR L+       A 
Sbjct: 651 DVEALLARDPGLLRPEHTLIRTLIERTDKEPAL 683


>gi|53726168|ref|YP_103944.1| ATP-dependent DNA helicase RecG [Burkholderia mallei ATCC 23344]
 gi|52429591|gb|AAU50184.1| ATP-dependent DNA helicase RecG [Burkholderia mallei ATCC 23344]
          Length = 686

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 252/696 (36%), Positives = 379/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 2   KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 54

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 55  IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 113

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 114 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 172

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 173 LDVPPLADAVRMLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 232

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +    +      + ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT
Sbjct: 233 PAMPRRARDDGAALSARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKT 292

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 293 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAA 352

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           LE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 353 LEAAALGTAQLVIGTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAG 412

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R DEVI R++  
Sbjct: 413 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREA 472

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F
Sbjct: 473 ALAGRQVYWVCPLIEESETLQLQTAVETYETLAVALPELKVGLVHGRLAPAEKAAVMDAF 532

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y 
Sbjct: 533 SRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYS 592

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 593 GPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIE 652

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   P++ +      R L    QY +A
Sbjct: 653 PARDAATRLIAAHPEVVAQ--HLARWLGAREQYLKA 686


>gi|242373518|ref|ZP_04819092.1| DNA helicase RecG [Staphylococcus epidermidis M23864:W1]
 gi|242348881|gb|EES40483.1| DNA helicase RecG [Staphylococcus epidermidis M23864:W1]
          Length = 682

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 219/659 (33%), Positives = 362/659 (54%), Gaps = 18/659 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VT+
Sbjct: 13  LDKIKGIGPKRLTLLEEL------NIHTVEDLVLYLPTRYEDNTVI-DLNQAEDQSTVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +    +     R   K+ ++     I +   +     LK        +TV GK  + 
Sbjct: 66  QGEVYSTPAVAFFGRNKSKLTVHIMVNNIAVKCVFFNQPYLKKKIELHGTVTVKGKWNRA 125

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192
           K  I      +    +QD     +E VY +  G+     +  I +AL  +  + EW+  D
Sbjct: 126 KQEINGNRMFFNEQTTQDDVQ--LEPVYRIKEGIKQKQIRDNIRQALEDV-TIHEWLSDD 182

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEI 251
           L +K    ++      +H+P   KD +    AR   A+ EL   ++ +  L R +   + 
Sbjct: 183 LREKYKLETLEYTLRTLHHP---KDKQSLLRARRTYAFTELFMFELRMQWLNRLEKTSDE 239

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            I I+ +    ++ + ++PF  T +Q++++ +I +D+    RM R+LQGDVGSGKT+VA 
Sbjct: 240 AIEIDYDINKVKEFIDHLPFELTDAQKTSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAA 299

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           I M A   AG Q+ +M P  ILA+QH E + +  ++T   V ++TG++    RR  LE++
Sbjct: 300 ICMYALKTAGYQSALMVPTEILAEQHAESLIELFRDTM-NVALLTGSVKGKKRRILLEQL 358

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MTATPI
Sbjct: 359 ENGSIDCLIGTHALIQDDVIFENVGLVITDEQHRFGVNQRQSLREKGAMTNVLFMTATPI 418

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL ++  G++D+S I + P GRKPI T      R D+V+ ++   L +G++AY ICP 
Sbjct: 419 PRTLAISVFGEMDVSSIKQLPKGRKPIITSWAKHERYDQVLTQMTSELRKGRQAYVICPL 478

Query: 492 IEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           IE  +   + ++VV  + SL +++ T  + ++HG+++  +K+ VM  F N    +L++TT
Sbjct: 479 IESSEHLEDVQNVVALYESLQQYYGTEKVGLLHGKLTAEEKDDVMQRFSNHEIDILVSTT 538

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R++
Sbjct: 539 VVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERMT 597

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           ++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 598 IMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANIVEDYRMLEVARDEAAQLIQ 656


>gi|170732045|ref|YP_001763992.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia MC0-3]
 gi|254246279|ref|ZP_04939600.1| RecG-like helicase [Burkholderia cenocepacia PC184]
 gi|124871055|gb|EAY62771.1| RecG-like helicase [Burkholderia cenocepacia PC184]
 gi|169815287|gb|ACA89870.1| ATP-dependent DNA helicase RecG [Burkholderia cenocepacia MC0-3]
          Length = 773

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/696 (35%), Positives = 378/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      I E+    I    G +   + 
Sbjct: 89  KTADKLAKL------GLTRSIDLVLHLPMRYEDETTLTPIGELLPGGIAQTEGVVFD-NE 141

Query: 82  FQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + + D  GE + L F       +K +   G+++ V G ++     + MVH
Sbjct: 142 VAYRPRRQLVVKIQDDDGEQLVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGMEMVH 200

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P      +      ++  VY    G+S    +K I  A+ R P LPE +  ++    L+ 
Sbjct: 201 PAVRVVEADAPLPQVLTPVYPSTAGVSQAYLRKAIENAVERTP-LPELLPPEIQRDYLKP 259

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P++ +A  I+H+PR   D     + + PA  R+ ++ELLA Q++L    ++ +    
Sbjct: 260 LDVPTLEQAVRILHHPRVDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAA 319

Query: 253 IPINVEGKIAQ-----KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +             ++   +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT
Sbjct: 320 PAMPRRTATDTDALTTRLYAALPFTLTGAQARVVDEIAHDLTLAHPMQRLLQGDVGSGKT 379

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 380 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRAWLEPLGVTVAWLAGSLKAKEKRAA 439

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           +E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 440 IEAAALGTAQLVIGTHAIIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARD 499

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+++S I E P GR P+ T ++   R +EVI R++  
Sbjct: 500 FQPHQLMMSATPIPRTLAMTYYADLEVSTIDELPPGRTPVLTRLVGDARREEVIARVREA 559

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR+S  DK +VM++F
Sbjct: 560 ALTGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMEAF 619

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 620 TRNEVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYT 679

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L++
Sbjct: 680 GPLSLTGRERLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLID 739

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR+ A  ++   P++ +      R L    QY +A
Sbjct: 740 PAREAAARLIAAYPEVVTQ--HLARWLGAREQYLKA 773


>gi|227534888|ref|ZP_03964937.1| DNA helicase RecG [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227187644|gb|EEI67711.1| DNA helicase RecG [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 698

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 216/686 (31%), Positives = 366/686 (53%), Gaps = 23/686 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P++   GVG K    L+ +            DLLFY P  + D      ++E +
Sbjct: 19  LMALTDPVTVLPGVGPKREAGLASL------GIHTIRDLLFYFPYRYDDL-KVKDLAEAA 71

Query: 66  EERIVTITGYISQHSSFQLQK--RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           ++  +T+ G +            R    + L      I + FF +    LK+ F  G + 
Sbjct: 72  DQEKLTVKGIVVTDPVISRFGPHRSRVNVKLQIERSVILVTFFNQ--PWLKDRFQMGDEA 129

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            + GK    +  +  +        +Q  + P + A+Y++   + +     +I  A  R  
Sbjct: 130 AIFGKWDAKRRSLTGM----KILATQSQDQPSMAAIYTVNKNVRMGTLLDLIKAAWERDQ 185

Query: 184 V-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + + +   + +     S A+  + +H P    +      AR    + E    Q+ +  
Sbjct: 186 QNINDLVPASIREHYRLMSDAQLVHGMHFPDTPAE---AKAARRTGVFREFFLFQLQIQA 242

Query: 243 MRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +++       G+ I  + +  + ++  +PF+ T +Q+  + +I  DM + N M R+LQGD
Sbjct: 243 LKQLNANSSNGLAIPYDNQALRALIATLPFALTNAQKRVVNEICADMRRPNHMNRLLQGD 302

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA I + AAV AG QA +M P  +LA+QH+  + K  ++  + + ++TG+   
Sbjct: 303 VGSGKTVVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTST 362

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR+ L  +  G+ ++IIGTHAL Q  + ++ L LV++DEQHRFGV QR  L +K   P
Sbjct: 363 KKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVIDEQHRFGVNQRKILQEKGQKP 422

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L MTATPIPRTL +T+ G++D+S I E PAGRKPI T+ +  N+ID+V   ++  +  
Sbjct: 423 DLLSMTATPIPRTLAITAYGEMDVSTIDELPAGRKPIATMWLRKNQIDQVYRIIREQVQS 482

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKN 539
           G + + I P I E ++ + ++  + F  + +       +A++HG+M   +K+ +M +F +
Sbjct: 483 GSQVFAITPLIAESEKIDLQNAEQLFVDMQKAVGNLGPVALLHGQMKPDEKDQIMRAFSD 542

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L++TTV+EVG+D+ +A+++ I +A+ FGL+QLHQLRGRVGRG++ + C+L+  P 
Sbjct: 543 GKIAVLVSTTVVEVGVDIPNATVMAIFDADRFGLSQLHQLRGRVGRGQKAAQCLLIADPK 602

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++    R+ ++  T DGFL+A++DL+ R  G+I G KQSG+P+F +A P      LE A
Sbjct: 603 -NEQGIARMEIMTKTNDGFLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEAA 661

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685
           +K    I   DP L     Q +   L
Sbjct: 662 QKIVAQIFKTDPHLLQSDHQPLAAYL 687


>gi|254456582|ref|ZP_05070011.1| ATP-dependent DNA helicase RecG [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083584|gb|EDZ61010.1| ATP-dependent DNA helicase RecG [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 683

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 256/688 (37%), Positives = 404/688 (58%), Gaps = 18/688 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + L+  +GVG K +  L K       N     DLL+  P S  DR +  KI E+    
Sbjct: 10  LLSDLTALKGVGIKTTNLLKK------KNINNIFDLLWKLPKSSTDRSFSTKIVELRIGV 63

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
             T+T  + Q   F   +  P K+L  D TGEI  +FF      +K +   G++ITV+GK
Sbjct: 64  EQTVT-IVPQKYLFPRIRNLPNKVLCKDETGEIDCIFFNSYEGYVKKILPIGKEITVSGK 122

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           I   +NR  + +P YI  ++  +        YSL  G+S  ++ KII + +  LP+L EW
Sbjct: 123 IGYFRNRYQLTNPKYISEDASLIKQS--HNTYSLTEGISEKIYNKIINQIIENLPILNEW 180

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
             K +L++    S  ++   +H P       + +   +RLA+DE+ +  +    +RK+ K
Sbjct: 181 HTKSILKRFDNISWNDSIKALHKPDNI--GAYKNNFYQRLAFDEIFSTFLVNSEIRKKIK 238

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K   +   +  +    +++ + FS T  Q  ++K+I  D+S  N+M R+LQGDVGSGKT+
Sbjct: 239 KNKKLNKVLNIQKQNNLIKTLDFSLTTDQIKSLKEINNDLSSSNKMFRLLQGDVGSGKTI 298

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           V+L+A   +V AG Q  +MAP  ILA+QH+   KK      + +E+I+G      ++  L
Sbjct: 299 VSLLAAYNSVNAGFQVAVMAPTEILARQHFTLAKKIFSK-NLRLELISGKSIYKEKKVIL 357

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427
           + + + +  II GTHA+FQ  + + KL L+I+DEQH+FGV QR +L  +      VLLMT
Sbjct: 358 DNLCNHKIDIIFGTHAIFQKKVNFKKLGLIIIDEQHKFGVNQRKRLSDKGGVDCDVLLMT 417

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S I EKP  RKPIKT     +++D+VI+ +K  +  G + +W
Sbjct: 418 ATPIPRTLTMTVYGDMDLSIIREKPQSRKPIKTYSKLESKVDDVIQFIKKEIKLGNQIFW 477

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +CP I+E K+ ++ S +++F  L E F + ++++HG+    +KE ++++F N    +L++
Sbjct: 478 VCPLIDESKKIDYSSAIKKFEFLKEKFPNKVSLLHGKTDTEEKEKILNNFLNKKFDILVS 537

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TT+IEVGID  +A++IIIENA  FGL+QLHQLRGRVGRG++ S+CIL++   LS+N+  R
Sbjct: 538 TTIIEVGIDFPNANVIIIENANKFGLSQLHQLRGRVGRGDKDSTCILMFKSNLSENAKKR 597

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +++LK   DGF+I+EED+K R  G+ILG KQSG+  F +A P  ++ L  +A K+ + I 
Sbjct: 598 INILKQNNDGFIISEEDMKIRGFGDILGFKQSGIKNFKLADPIHNNDLFLLAEKEMRRIE 657

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
             + D++       + L+ LY   +   
Sbjct: 658 KSNEDIS-----RYKPLVKLYDRADIIN 680


>gi|116495097|ref|YP_806831.1| ATP-dependent DNA helicase RecG [Lactobacillus casei ATCC 334]
 gi|116105247|gb|ABJ70389.1| ATP-dependent DNA helicase RecG [Lactobacillus casei ATCC 334]
 gi|327382643|gb|AEA54119.1| DNA helicase RecG [Lactobacillus casei LC2W]
 gi|327385837|gb|AEA57311.1| DNA helicase RecG [Lactobacillus casei BD-II]
          Length = 718

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 216/686 (31%), Positives = 366/686 (53%), Gaps = 23/686 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P++   GVG K    L+ +            DLLFY P  + D      ++E +
Sbjct: 39  LMALTDPVTVLPGVGPKREAGLASL------GIHTIRDLLFYFPYRYDDL-KVKDLAEAA 91

Query: 66  EERIVTITGYISQHSSFQLQK--RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           ++  +T+ G +            R    + L      I + FF +    LK+ F  G + 
Sbjct: 92  DQEKLTVKGIVVTDPVISRFGPHRSRVNVKLQIERSVILVTFFNQ--PWLKDRFQMGDEA 149

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            + GK    +  +  +        +Q  + P + A+Y++   + +     +I  A  R  
Sbjct: 150 AIFGKWDAKRRSLTGM----KILATQSQDQPSMAAIYTVNKNVRMGTLLDLIKAAWERDQ 205

Query: 184 V-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + + +   + +     S A+  + +H P    +      AR    + E    Q+ +  
Sbjct: 206 QNINDLVPASIREHYRLMSDAQLVHGMHFPDTPAE---AKAARRTGVFREFFLFQLQIQA 262

Query: 243 MRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +++       G+ I  + +  + ++  +PF+ T +Q+  + +I  DM + N M R+LQGD
Sbjct: 263 LKQLNANSSNGLAIPYDNQALRALIATLPFALTNAQKRVVNEICADMRRPNHMNRLLQGD 322

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA I + AAV AG QA +M P  +LA+QH+  + K  ++  + + ++TG+   
Sbjct: 323 VGSGKTVVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTST 382

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR+ L  +  G+ ++IIGTHAL Q  + ++ L LV++DEQHRFGV QR  L +K   P
Sbjct: 383 KKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVIDEQHRFGVNQRKILQEKGQKP 442

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L MTATPIPRTL +T+ G++D+S I E PAGRKPI T+ +  N+ID+V   ++  +  
Sbjct: 443 DLLSMTATPIPRTLAITAYGEMDVSTIDELPAGRKPIATMWLRKNQIDQVYRIIREQVQS 502

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKN 539
           G + + I P I E ++ + ++  + F  + +       +A++HG+M   +K+ +M +F +
Sbjct: 503 GSQVFAITPLIAESEKIDLQNAEQLFVDMQKAVGNLGPVALLHGQMKPDEKDQIMRAFSD 562

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L++TTV+EVG+D+ +A+++ I +A+ FGL+QLHQLRGRVGRG++ + C+L+  P 
Sbjct: 563 GKIAVLVSTTVVEVGVDIPNATVMAIFDADRFGLSQLHQLRGRVGRGQKAAQCLLIADPK 622

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++    R+ ++  T DGFL+A++DL+ R  G+I G KQSG+P+F +A P      LE A
Sbjct: 623 -NEQGIARMEIMTKTNDGFLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEAA 681

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685
           +K    I   DP L     Q +   L
Sbjct: 682 QKIVAQIFKTDPHLLQSDHQPLAAYL 707


>gi|42519402|ref|NP_965332.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii NCC 533]
 gi|41583690|gb|AAS09298.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii NCC 533]
          Length = 679

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 214/682 (31%), Positives = 365/682 (53%), Gaps = 24/682 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF P++  +GVG K +  L+ +            DLLFY P  + D      + +I + +
Sbjct: 8   LFEPVTELKGVGAKTATALASL------GINTIYDLLFYFPFRYDDLETI-PLDQIEDGQ 60

Query: 69  IVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V + G +           ++      +      I + FF +    LK+    G+++ V 
Sbjct: 61  KVLLKGMVVTDPFVSRFGYRKTRLSFKIKIDHDIIMVNFFNQ--PWLKDKVESGKEVAVY 118

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVL 185
           GK +  +          +    +D  F     +YS+   L  +  +K+I  AL   +  +
Sbjct: 119 GKYQVARQSFSGFK---LVAEKKDSGFA---PIYSVNRHLKQNKLQKLIDLALQEAINEV 172

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-ALLLMR 244
            E I   + +K    S       +H+P+   +      AR    + E    Q+    L+ 
Sbjct: 173 GETIPASIREKYRLLSDRVLVEKMHHPKNGNE---AKIARRSAIFREFFLFQMQLAQLLS 229

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           ++ +   G+    +    ++++  IPF  +  Q+  + +I  D+  K +M R+LQGDVGS
Sbjct: 230 QRNEDAPGVEKKYDLAAVKELIEEIPFELSDDQKKVVNEIFADLHSKRQMRRLLQGDVGS 289

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA+ A+ AAV AG QA +M P  ILAQQH+  I +  +   + V ++TG+     +
Sbjct: 290 GKTVVAVFAIYAAVTAGYQAALMVPTEILAQQHFAKIDELLKPLGVRVALLTGDTKDLEK 349

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           ++    +A G  +++IGTHAL Q  + +  L LVI+DEQHRFGV QR  L +K  AP +L
Sbjct: 350 KEIYRELADGTINVVIGTHALIQKEVHFKNLGLVIIDEQHRFGVNQRNTLIKKGDAPDIL 409

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            MTATPIPRTL LT  GD+ +S+I   P GRKP+ +     +++ EV++ ++  L +G +
Sbjct: 410 AMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLREVLDLMRSQLDKGFQ 469

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            Y + P I E ++S+ ++  +    +  +F   ++ ++HG+M    K  +MDSF  G   
Sbjct: 470 IYVVTPLISESEKSDLKNAEDLQAKIAHYFKDENVVLLHGQMKGDQKNEIMDSFAAGKIN 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ +  P  ++ 
Sbjct: 530 ILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK-TEI 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R++++ +T +GF +AEEDLK R EG++ G  QSG+P+F +       + L  A+K+A
Sbjct: 589 GKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNALVTAQKEA 648

Query: 664 KHILTQDPDLTSVRGQSIRILL 685
           ++++  DP L +   + ++ +L
Sbjct: 649 RNLIKSDPALVNSENKFLQEVL 670


>gi|329667073|gb|AEB93021.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii DPC 6026]
          Length = 679

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 219/684 (32%), Positives = 373/684 (54%), Gaps = 28/684 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF P++  +GVG K +  L+ +            DLLFY P  + D      + +I + +
Sbjct: 8   LFEPVTELKGVGAKTATALASL------GINTIYDLLFYFPFRYDDLETI-PLDQIEDGQ 60

Query: 69  IVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            V + G +      S F  +K R  +K+ ++     I + FF +    LK+    G+++ 
Sbjct: 61  KVLLKGMVVTDPFVSRFGYRKTRLSFKMKIDHD--IIMVNFFNQ--PWLKDKVESGKEVA 116

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           V GK +  +  +       +    +D  F     +YS+   L  +  +K+I  AL   + 
Sbjct: 117 VYGKYQVARQSLSGFK---LVAEKKDSGFA---PIYSVNRHLKQNKLQKLIDLALEEAIN 170

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-ALLL 242
            + E I   + +K    S       +H+P+   +      AR    + E    Q+    L
Sbjct: 171 EVGETIPASIREKYRLLSDRVLVEKMHHPKNDNE---AKIARRSAIFREFFLFQMQLAQL 227

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           + ++ +   G+    +    ++++  IPF  +  Q+  + +I  D+  K +M R+LQGDV
Sbjct: 228 LSQRNEDAPGVEKKYDLAAVKELIEEIPFELSDDQKKVVNEIFADLHSKRQMRRLLQGDV 287

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA+ A+ AAV AG QA +M P  ILAQQH+  I +  +   + V ++TG+    
Sbjct: 288 GSGKTVVAVFAIYAAVTAGYQAALMVPTEILAQQHFAKIDELLKPLGVRVALLTGDTKDL 347

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +++    +A G  +++IGTHAL Q  + +  L LVI+DEQHRFGV QR  L +K  AP 
Sbjct: 348 EKKEIYRELADGTINVVIGTHALIQKDVHFKNLGLVIIDEQHRFGVNQRNTLIKKGDAPD 407

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L MTATPIPRTL LT  GD+ +S+I   P GRKP+ +     +++ EV++ ++  L +G
Sbjct: 408 ILAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLREVLDLMRSQLDKG 467

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGT 541
            + Y + P I E ++S+ ++  +    +  +F   ++ ++HG+M    K  +MDSF  G 
Sbjct: 468 FQIYVVTPLISESEKSDLKNAEDLQAKIAHYFKDENVVLLHGQMKGDQKNEIMDSFAAGK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ +  P  +
Sbjct: 528 INILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK-T 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R++++ +T +GF +AEEDLK R EG++ G  QSG+P+F +       + L  A+K
Sbjct: 587 EIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNALVTAQK 646

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
           +A++++  DP L +   + ++ +L
Sbjct: 647 EARNLIKSDPALVNSENKFLQEVL 670


>gi|153814834|ref|ZP_01967502.1| hypothetical protein RUMTOR_01049 [Ruminococcus torques ATCC 27756]
 gi|145847865|gb|EDK24783.1| hypothetical protein RUMTOR_01049 [Ruminococcus torques ATCC 27756]
          Length = 687

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 241/676 (35%), Positives = 380/676 (56%), Gaps = 18/676 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S+ +G+G+K      KI            DL+ Y+P  F        + E+ E ++ T+
Sbjct: 8   ISSLKGIGEKTEKLFQKI------GVDTVEDLIRYYPKGFEIFEDPISVGEVEEGKVCTV 61

Query: 73  TGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +  +       K +   + L D TG + ++++  +   L+N   +G  + + G+I +
Sbjct: 62  AGMVFGRIQVSTNSKMQITTLHLKDVTGTLKVIWY--RMPFLRNTLAKGGTLVLRGRIVR 119

Query: 132 LKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
            KN I+M HP   + +S+ +     ++ VYSL  GL+ +   K + +ALS L    + + 
Sbjct: 120 KKNEIVMEHPEIFYPSSKYEEKRDTMQPVYSLTAGLTNNSVIKAVKQALSFLDDEQDILP 179

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           ++L  K SFP   EA   +H PR+ +DF     AR+R  ++E L   ++L  M++   + 
Sbjct: 180 EELRLKYSFPKYEEAIYAMHFPREKEDF---VRARKRFVFEEFLLFILSLRRMKESENRS 236

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
                  +    ++ L  +P+  T +QE    +I  DM  +N M R++QGDVGSGKT++A
Sbjct: 237 ENPFHFADRPEIEQFLGALPYHLTNAQEKVWTEIKSDMQSENVMSRLVQGDVGSGKTIIA 296

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII--VEIITGNMPQAHRRKAL 368
            +A+  +   G Q  +MAP  +LA QHYE I +  +  +I    E++TG+M  + ++KA 
Sbjct: 297 FLALLLSALNGYQGALMAPTEVLAVQHYENISEMLEKYKIPLQAELLTGSMTMSQKKKAY 356

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            RI  G+A IIIGTHAL Q+ + Y  L LV+ DEQHRFGV+QR  L QK   PH+L+M+A
Sbjct: 357 ARIESGEAAIIIGTHALIQEKVLYRNLALVVTDEQHRFGVRQRETLAQKGKTPHILVMSA 416

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +   GD+DIS I E P  R PIK  ++     ++    ++  + EG++ Y I
Sbjct: 417 TPIPRTLAIILYGDLDISIINEMPKNRLPIKNCVVNTEYREKAYRFMRKQVLEGRQCYVI 476

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP +EE +  +  +V++    L E       +  +HG+M   +K+ +M +F     ++L+
Sbjct: 477 CPMVEESESLDAENVIDYSQMLAEELGDGIHVGCLHGKMKQKEKDEIMSAFGKNEIQILV 536

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVGIDV +A++++IENAE FGLAQLHQLRGRVGRG   S CI +     S  +  
Sbjct: 537 STTVVEVGIDVPNATVMLIENAERFGLAQLHQLRGRVGRGGYQSYCIFMSASK-SDETKE 595

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL +L  + DGF IA EDL+ R  G++ GI+QSG+  F IA       +L+IA ++A  I
Sbjct: 596 RLEILNRSNDGFFIAGEDLRLRGPGDLFGIRQSGILDFKIADVFQDAEVLKIAGEEANKI 655

Query: 667 LTQDPDLTSVRGQSIR 682
           L +DP+L     + I+
Sbjct: 656 LKRDPELKDPSYKKIK 671


>gi|317500351|ref|ZP_07958576.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089640|ref|ZP_08338539.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898292|gb|EFV20338.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405008|gb|EGG84546.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 685

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 241/676 (35%), Positives = 380/676 (56%), Gaps = 18/676 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S+ +G+G+K      KI            DL+ Y+P  F        + E+ E ++ T+
Sbjct: 6   ISSLKGIGEKTEKLFQKI------GVDTVEDLIRYYPKGFEIFEDPISVGEVEEGKVCTV 59

Query: 73  TGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +  +       K +   + L D TG + ++++  +   L+N   +G  + + G+I +
Sbjct: 60  AGMVFGRIQVSTNSKMQITTLHLKDVTGTLKVIWY--RMPFLRNTLAKGGTLVLRGRIVR 117

Query: 132 LKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
            KN I+M HP   + +S+ +     ++ VYSL  GL+ +   K + +ALS L    + + 
Sbjct: 118 KKNEIVMEHPEIFYPSSKYEEKRDTMQPVYSLTAGLTNNSVIKAVKQALSFLDDEQDILP 177

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           ++L  K SFP   EA   +H PR+ +DF     AR+R  ++E L   ++L  M++   + 
Sbjct: 178 EELRLKYSFPKYEEAIYAMHFPREKEDF---VRARKRFVFEEFLLFILSLRRMKESENRS 234

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
                  +    ++ L  +P+  T +QE    +I  DM  +N M R++QGDVGSGKT++A
Sbjct: 235 ENPFHFADRPEIEQFLGALPYHLTNAQEKVWTEIKSDMQSENVMSRLVQGDVGSGKTIIA 294

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII--VEIITGNMPQAHRRKAL 368
            +A+  +   G Q  +MAP  +LA QHYE I +  +  +I    E++TG+M  + ++KA 
Sbjct: 295 FLALLLSALNGYQGALMAPTEVLAVQHYENISEMLEKYKIPLQAELLTGSMTMSQKKKAY 354

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            RI  G+A IIIGTHAL Q+ + Y  L LV+ DEQHRFGV+QR  L QK   PH+L+M+A
Sbjct: 355 ARIESGEAAIIIGTHALIQEKVLYRNLALVVTDEQHRFGVRQRETLAQKGKTPHILVMSA 414

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +   GD+DIS I E P  R PIK  ++     ++    ++  + EG++ Y I
Sbjct: 415 TPIPRTLAIILYGDLDISIINEMPKNRLPIKNCVVNTEYREKAYRFMRKQVLEGRQCYVI 474

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP +EE +  +  +V++    L E       +  +HG+M   +K+ +M +F     ++L+
Sbjct: 475 CPMVEESESLDAENVIDYSQMLAEELGDGIHVGCLHGKMKQKEKDEIMSAFGKNEIQILV 534

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVGIDV +A++++IENAE FGLAQLHQLRGRVGRG   S CI +     S  +  
Sbjct: 535 STTVVEVGIDVPNATVMLIENAERFGLAQLHQLRGRVGRGGYQSYCIFMSASK-SDETKE 593

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL +L  + DGF IA EDL+ R  G++ GI+QSG+  F IA       +L+IA ++A  I
Sbjct: 594 RLEILNRSNDGFFIAGEDLRLRGPGDLFGIRQSGILDFKIADVFQDAEVLKIAGEEANKI 653

Query: 667 LTQDPDLTSVRGQSIR 682
           L +DP+L     + I+
Sbjct: 654 LKRDPELKDPSYKKIK 669


>gi|226226849|ref|YP_002760955.1| ATP-dependent DNA helicase RecG [Gemmatimonas aurantiaca T-27]
 gi|226090040|dbj|BAH38485.1| ATP-dependent DNA helicase RecG [Gemmatimonas aurantiaca T-27]
          Length = 706

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 237/699 (33%), Positives = 373/699 (53%), Gaps = 22/699 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
              P++  +GVG   +L L+++        T   DLL + P  + D      I++ +   
Sbjct: 23  FDTPVTYLKGVGPARALMLARL------GITVAGDLLRHVPHRYEDASTITPINDAAIGA 76

Query: 69  IVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            V++ G +        +K  R ++ ++ D +G I + +       L     +G  +  TG
Sbjct: 77  DVSVLGQVIAKGVLPTRKGLRVFQAVIQDSSGLIEIAW--PGQPFLDRTINKGDWLLCTG 134

Query: 128 KIKKLKNRIIMVHPHYI--FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PV 184
            ++    R +     Y+    + +      + A+Y    GLSV + + ++ + L  L P+
Sbjct: 135 PVRFFHGRRLQPR-EYVNLGPDEEGTGGGRVLAIYPSTEGLSVRMLRSLVQQHLDALLPL 193

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E +  D+LQ+   P++ EA  ++H P    + E     R RLA++ELL  Q+      
Sbjct: 194 VQEPLPADVLQEADVPALPEALRMVHRPASVAEAER---GRARLAFEELLCVQVLHRRAH 250

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +   +   G  +     +  ++   +P++ T +Q  A+++I  DM    RM R+LQGDVG
Sbjct: 251 QVARQARPGRALRSRRTLTTQLREQLPYALTAAQVRAVREIATDMGSPWRMHRLLQGDVG 310

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT+VAL A   A+E G Q  +MAP  +LA+QH   +        I   ++TG +  A 
Sbjct: 311 AGKTVVALFAALIAMENGAQVALMAPTELLAEQHARGMTALLAPLGIAPVLLTGRLSAAD 370

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR AL RIA     +++GTHAL Q  + +  L L I+DEQHRFGV+QR  L  K TA  V
Sbjct: 371 RRAALARIADPAPALVVGTHALLQSDVAFANLGLSIIDEQHRFGVEQRAVLGDKGTATDV 430

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           LLMTATPIPR+L LT  GD+D+S + E+P GR+PI TV+   +  D+V       L  G 
Sbjct: 431 LLMTATPIPRSLALTLHGDLDVSVLDERPPGRQPITTVVRRESARDKVFAFAASELDAGH 490

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y + P IE  ++ + ++    F++L     +   +A++HGR+   +++++M  F++G 
Sbjct: 491 QLYVVYPLIETSEKIDLKNATTMFDTLVAGPLAGRQVALLHGRIPGEERDAIMRRFRDGE 550

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
              L++TTVIEVGIDV +AS++IIE+ E FGL+QLHQLRGRVGRG+  S CILL    + 
Sbjct: 551 IDALVSTTVIEVGIDVPNASVMIIEHPERFGLSQLHQLRGRVGRGQARSYCILL--GDVG 608

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
             +  RL +   TEDGF IA  DL+ R  G++ G +Q G P F +A     ++L + AR+
Sbjct: 609 GEAAERLELFAGTEDGFEIARADLRLRGMGDLFGARQHGDPAFRVADLLRDEALHDTARE 668

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            A  +L QDP+L       +R LL +  Y  A    R G
Sbjct: 669 VADRLLAQDPELAQPAHAGLRHLLTV-GYARALDLFRVG 706


>gi|301066660|ref|YP_003788683.1| recG-like helicase [Lactobacillus casei str. Zhang]
 gi|300439067|gb|ADK18833.1| RecG-like helicase [Lactobacillus casei str. Zhang]
          Length = 718

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 217/686 (31%), Positives = 365/686 (53%), Gaps = 23/686 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P++   GVG K    L+ +            DLLFY P  + D      ++E +
Sbjct: 39  LMALTDPVTVLPGVGPKREAGLASL------GIHTIRDLLFYFPYRYDDL-KVKDLAEAA 91

Query: 66  EERIVTITGYISQHSSFQLQK--RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           ++  +T+ G +            R    + L      I + FF +    LK+ F  G + 
Sbjct: 92  DQEKLTVKGIVVTDPVISRFGPHRSRVNVKLQIERSVILVTFFNQ--PWLKDRFQMGDEA 149

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            + GK    +  +  +        +Q  + P + A+Y++   + +     +I  A  R  
Sbjct: 150 AIFGKWDAKRRSLTGM----KILATQSQDQPSMAAIYTVNKNVRMGTLLDLIKAAWERDR 205

Query: 184 V-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + + +   + +     S A+  + +H P    +      AR    + E    Q+ +  
Sbjct: 206 QNINDLVPASIREHYRLMSDAQLVHGMHFPDTPAE---AKAARRTGVFREFFLFQLQIQA 262

Query: 243 MRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +++       G+ I  + +  + ++  +PF+ T +Q+  + +I  DM + N M R+LQGD
Sbjct: 263 LKQLNANSSNGLAIPYDNQALRALIATLPFALTNAQKRVVNEICADMRRPNHMNRLLQGD 322

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA I + AAV AG QA +M P  +LA+QH+  + K  ++  + + ++TG+   
Sbjct: 323 VGSGKTIVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTST 382

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR+ L  +  G+ ++IIGTHAL Q  + ++ L LV++DEQHRFGV QR  L +K   P
Sbjct: 383 KKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVIDEQHRFGVNQRKILQEKGQKP 442

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +  N+ID+V   ++  +  
Sbjct: 443 DLLSMTATPIPRTLAITAYGEMDVSTIDELPAGRKPIATTWLRKNQIDQVYRIIREQVQS 502

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKN 539
           G + + I P I E ++ + ++  + F  + +       +A++HG+M   +K+ +M +F +
Sbjct: 503 GSQVFAITPLIAESEKIDLQNAEQLFVDMQKAVGNLGPVALLHGQMKPDEKDQIMRAFSD 562

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L++TTV+EVG+DV +A+++ I +A+ FGL+QLHQLRGRVGRG++ + C+L+  P 
Sbjct: 563 GKIAVLVSTTVVEVGVDVPNATVMAIFDADRFGLSQLHQLRGRVGRGQKAAQCLLIADPK 622

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++    R+ ++  T DGFL+A++DL+ R  G+I G KQSG+P+F +A P      LE A
Sbjct: 623 -NEQGIARMEIMTKTNDGFLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEAA 681

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685
           +K    I   DP L     Q +   L
Sbjct: 682 QKIVAQIFKTDPHLLQSDHQPLAAYL 707


>gi|146320180|ref|YP_001199891.1| RecG-like helicase [Streptococcus suis 98HAH33]
 gi|145690986|gb|ABP91491.1| RecG-like helicase [Streptococcus suis 98HAH33]
          Length = 635

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 229/647 (35%), Positives = 360/647 (55%), Gaps = 25/647 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   LS   G+G K +    KI            DLL Y+P  + D      I ++ 
Sbjct: 1   MKRLCDELSVLPGIGPKSAEKFLKIS------IQNINDLLTYYPFRYEDF-ESKSIYDLQ 53

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           +     + G +   ++ Q    +  ++  +   GE+ L   +     L +    G+ I V
Sbjct: 54  DGEKAVVVGEVVSPANVQYYGYKRNRLRFSMKQGEVVLAVSFFNQPYLADKIVLGQDIAV 113

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LP 183
            GK  K K  +  +       +        ++ VY +  G+S     K I  A+ +  L 
Sbjct: 114 WGKWDKAKASLTGMKILAQVSDE-------LQPVYHVAQGISQVNLVKAIKTAIDQGYLH 166

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           +L E +   L ++    +  EA   +H P      E    A  R+ ++EL   Q+ L ++
Sbjct: 167 LLEENLPSVLRERYRLMNRREAVFAMHFPTN---LEEYRQALRRMKFEELFYFQLQLQML 223

Query: 244 RKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +   +  +  + I  +       +R +PF  T +Q  A+ +IL DM     M R+LQGDV
Sbjct: 224 KANNRDILNGLKIAYDADRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMNRLLQGDV 283

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA +AM AAV AG QA IM P  ILA+QH+E +++     ++ + ++TG M  A
Sbjct: 284 GSGKTVVAGLAMFAAVTAGMQAAIMVPTEILAEQHFESLRQLF--PELSIALLTGGMKAA 341

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            RR ALE I+ GQ  II+GTHAL Q+S+ Y+KL LV+ DEQHRFGV+QR    +K   P 
Sbjct: 342 ERRTALEAISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREKGDNPD 401

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   ++  V++ L+  L  G
Sbjct: 402 VLMMTATPIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWLERELEVG 461

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNG 540
            + Y+I P IEE +  + ++ V+  + L  HF   + +  +HG+M + +K+++M +FK  
Sbjct: 462 AQVYFISPLIEESEALDLKNAVDLQSDLQAHFGEQVTVDLLHGKMKNDEKDAIMQAFKER 521

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG++V +A++++I +A+ FGL+QLHQLRGRVGRG + S  +L+ +P  
Sbjct: 522 KTNILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGHKQSYAVLVANPK- 580

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           +++   R+ ++  T DGF++AE DLK R  GEI G +QSG+P+F +A
Sbjct: 581 TESGKERMKIMTETTDGFILAEADLKMRGSGEIFGTRQSGLPEFQVA 627


>gi|242242509|ref|ZP_04796954.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis W23144]
 gi|242234083|gb|EES36395.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis W23144]
          Length = 682

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 219/659 (33%), Positives = 360/659 (54%), Gaps = 18/659 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VT+
Sbjct: 13  LDKIKGIGPKRLALLEEL------NIKSVEDLVLYLPTRYEDNTVI-DLNQADDQATVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +    +     R   K+ ++     I +   +     LK        +T+ GK  + 
Sbjct: 66  QGEVYSSPTVAFFGRNKSKLTVHLMINHIAVKCVFFNQPYLKKKLELNSIVTIKGKWNRN 125

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192
           K  I        F++ ++     +E VY +  G+     +  I +ALS +  + EW+  D
Sbjct: 126 KQEINGNR--IFFNDQKNQEDAHLEPVYRVKEGIKQKQLRDNIRQALSDV-TIHEWLTDD 182

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEI 251
           L +K    ++A     +H+P   ++       R   A+ EL   ++ +  L R +   + 
Sbjct: 183 LREKYKLETLAYTIQTLHHPIDKQNLLRA---RRTYAFTELFMFELRMQWLNRLEKTSDE 239

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            I IN +    ++ + ++PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT+VA 
Sbjct: 240 AIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAA 299

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           I M A   AG Q+ +M P  ILA+QH E + +   NT   V ++TG++    RR  LE++
Sbjct: 300 ICMYALKTAGYQSALMVPTEILAEQHAESLMQLFGNTM-NVALLTGSVKGKKRRLLLEQL 358

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MTATPI
Sbjct: 359 ENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMTATPI 418

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL ++  G++D+S I + P GRKPIKT      + D+V+ ++   L +G++AY ICP 
Sbjct: 419 PRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICPL 478

Query: 492 IEEKKE-SNFRSVVERFNSLH-EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           IE  +   + ++VVE + SL  ++    + ++HG+M+  DK+ VM  F      +L++TT
Sbjct: 479 IESSEHLEDVQNVVELYESLQSDYGNEKVGLLHGKMTAEDKDQVMQKFSEHEIDILVSTT 538

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R++
Sbjct: 539 VVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERMT 597

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           ++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 598 IMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAELIQ 656


>gi|152980116|ref|YP_001352039.1| ATP-dependent DNA helicase RecG [Janthinobacterium sp. Marseille]
 gi|151280193|gb|ABR88603.1| RecG-like helicase [Janthinobacterium sp. Marseille]
          Length = 743

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 249/687 (36%), Positives = 376/687 (54%), Gaps = 28/687 (4%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYISQ 78
           +K    L K+           +D + + P  + D      ISE      R V + G ++ 
Sbjct: 65  EKIDDKLIKL------GLRSDMDKVLHLPMRYEDETEIKSISEAGFIFGRSVQVEGVVTS 118

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
                 + RR   + ++D TG++ + F       +K +  EG ++   G+++       M
Sbjct: 119 C-EVAFRPRRQLVVTISDDTGQLVMRFLNFYGSQVKQM-AEGNRVRARGEVRHGFFGAEM 176

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           VHP+Y            +  VY    GLS  + +K I++A++R+    + +   L  +  
Sbjct: 177 VHPNYKMVVEGAPLPAALTPVYPAGEGLSQTILRKTILDAMTRIE-WRDTLNDKLRGELD 235

Query: 199 FPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
                 A  ++HNP    D     + +  A  R+ +DELLA Q+++   +   + +    
Sbjct: 236 LMPFEPAVRLLHNPPPDIDESALADRSHAAWVRMKFDELLAQQLSMKRAQMARRAKGAAV 295

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +   GK+++  L+ +PFS T +Q+  +++I  D+ Q   M R+LQGDVGSGKT+VA +A 
Sbjct: 296 LPSIGKLSKAFLKQLPFSLTGAQQRVLEEIRADLKQSFPMQRLLQGDVGSGKTVVAALAA 355

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           A A+++G QAV+MAP  ILA QH+  I  + +   + V  +TG++ +  + +A  RI  G
Sbjct: 356 AQAIDSGFQAVLMAPTEILADQHFRKIAGWMEPLGVNVAWLTGSLKKKEKLEAKARIEAG 415

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT----------QKATAPHVL 424
            A +IIGTHAL Q+ +Q+ KL LVIVDEQHRFGV QRL L           Q+ T PH L
Sbjct: 416 TAQLIIGTHALIQEDVQFAKLGLVIVDEQHRFGVGQRLVLRNKGVDNNASAQQQTIPHQL 475

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPRTL +T   D+++S I E P GR PI T +I  NR DEVIER+     EG++
Sbjct: 476 MMSATPIPRTLAMTYYADLEVSVIDELPPGRTPIVTRVIDQNRRDEVIERVHAAALEGRQ 535

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543
            YW+CP IEE +    ++  +   +L E      + ++HGRM   +K+ VMD+F  G   
Sbjct: 536 VYWVCPLIEESEALQLQTATDTHQTLVEALPDLQVGLVHGRMKPAEKQQVMDAFTRGEIH 595

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ATTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S C+LLY  PL   
Sbjct: 596 VLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSTASVCLLLYQGPLGMI 655

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL +++ + DGF IA +DL+ R  GE LG +QSG      A  E    L++ AR  A
Sbjct: 656 AKQRLRIMRESTDGFEIARKDLEIRGPGEFLGARQSGQAMLRFADLETDQWLVDRARDLA 715

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQY 690
           + +L  D  + +V     R L     Y
Sbjct: 716 QTLLRDD--MATVDAHLARWLGAREDY 740


>gi|57866670|ref|YP_188376.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis RP62A]
 gi|81674916|sp|Q5HPW4|RECG_STAEQ RecName: Full=ATP-dependent DNA helicase recG
 gi|57637328|gb|AAW54116.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis RP62A]
          Length = 682

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 219/659 (33%), Positives = 360/659 (54%), Gaps = 18/659 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VT+
Sbjct: 13  LDKIKGIGPKRLALLEEL------NIKSVEDLVLYLPTRYEDNTVI-DLNQADDQATVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +    +     R   K+ ++     I +   +     LK        +T+ GK  + 
Sbjct: 66  QGEVYSSPTVAFFGRNKSKLTVHLMINHIAVKCVFFNQPYLKKKLELNSIVTIKGKWNRN 125

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192
           K  I        F++ ++     +E VY +  G+     +  I +ALS +  + EW+  D
Sbjct: 126 KQEINGNR--IFFNDQKNQEDAHLEPVYRVKEGIKQKQLRDNIRQALSDV-TIHEWLTDD 182

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEI 251
           L +K    ++A     +H+P   ++       R   A+ EL   ++ +  L R +   + 
Sbjct: 183 LREKYKLETLAYTIQTLHHPIDKQNLLRA---RRTYAFTELFMFELRMQWLNRLEKTSDE 239

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            I IN +    ++ + ++PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT+VA 
Sbjct: 240 AIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKTIVAA 299

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           I M A   AG Q+ +M P  ILA+QH E + +   NT   V ++TG++    RR  LE++
Sbjct: 300 ICMYALKTAGYQSALMVPTEILAEQHAESLMQLFGNTM-NVALLTGSVKGKKRRLLLEQL 358

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MTATPI
Sbjct: 359 ENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMTATPI 418

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL ++  G++D+S I + P GRKPIKT      + D+V+ ++   L +G++AY ICP 
Sbjct: 419 PRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICPL 478

Query: 492 IEEKKE-SNFRSVVERFNSLH-EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           IE  +   + ++VVE + SL  ++    + ++HG+M+  DK+ VM  F      +L++TT
Sbjct: 479 IESSEHLEDVQNVVELYESLQSDYGNEKVGLLHGKMTAEDKDQVMQKFSEHEIDILVSTT 538

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R++
Sbjct: 539 VVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERMT 597

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           ++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 598 IMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAELIQ 656


>gi|307718497|ref|YP_003874029.1| ATP-dependent DNA helicase RecG [Spirochaeta thermophila DSM 6192]
 gi|306532222|gb|ADN01756.1| ATP-dependent DNA helicase RecG [Spirochaeta thermophila DSM 6192]
          Length = 683

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/693 (34%), Positives = 356/693 (51%), Gaps = 14/693 (2%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            L  + AP++T  G+G K +    K+            DLL ++P  + DR     ++E 
Sbjct: 2   LLEDISAPITTLAGIGGKTARHFHKL------GIRSVGDLLQHYPRDYEDRSTFTSLAEA 55

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
                 T    I+             +I +NDGT    L+ F R    L   F  G K+ 
Sbjct: 56  HATGKATTVATITLMDYIGKPSNPVLRIFINDGTELAALVCFGRN--FLSRKFSPGMKVF 113

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           V+G+ +    ++         +      F  I  +Y     L   + +  +  AL +   
Sbjct: 114 VSGQFEMRYGKLQSTRFIIEPYTESPKEFGKILPIYPTTEDLPQTILRSAVQAALRQYLP 173

Query: 185 LPEWIEKDLL-QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           L +      L   +S P + EA   IH P    D    + AR RL Y EL   Q+ ++  
Sbjct: 174 LLDDPLPPSLLAARSLPPLPEALAAIHFPP---DRAALTRARTRLIYQELFFLQVIVVRA 230

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
             + K ++  P++    + +++ R++PF  T  QE A+++I  D +    M R+LQGDVG
Sbjct: 231 AMKRKTQLQAPVHFPRTLQERVRRSLPFPLTPDQEKALEEIYADTTSPRPMARLLQGDVG 290

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVAL+A    +EAG Q   M P  +LA QH E          I   ++ G +  A 
Sbjct: 291 SGKTLVALLAALPYIEAGHQVAFMVPTELLALQHAETAHTLLSPFGIRTALLAGTLQPAA 350

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR  L  I  G+  ++IGTH LF D + Y  L LVI+DEQH+FGV QR +L +KA+ P +
Sbjct: 351 RRTLLSAILRGEVDLVIGTHTLFSDDVAYRNLRLVIIDEQHKFGVSQRARLLEKASHPDL 410

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           LLMTATPIPRT+ LT  GD+D+S I   P GRKP++T +  + + ++V   ++  L +G 
Sbjct: 411 LLMTATPIPRTMALTLYGDMDMSTIKTMPPGRKPVRTHLAVLGKEEKVYTWVEKELEKGH 470

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +AY++ P I E ++   R+       L   +    +A+IH R+ D +KE +M  F  GT 
Sbjct: 471 QAYFVYPLIGESEKLELRNAESMVEFLRRRYPRWKVALIHSRIPDEEKERIMREFMQGTI 530

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+AT+VIEVG++V  A+ I+IE+AE FGLA LHQLRGRVGR +  S   L+Y P L++
Sbjct: 531 RILVATSVIEVGVNVPTATCIVIEHAERFGLATLHQLRGRVGRSDRQSYAFLVYSPDLTE 590

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARK 661
            +  RL  +K T DGFLIAE+DL+ R  G++L G  Q+G  +  IA       L+   RK
Sbjct: 591 EAKARLRTMKETTDGFLIAEKDLEIRGPGDLLDGTIQAGHLRLRIAHLTRDAPLMHEVRK 650

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           D + +L +DP L       IR L+       A 
Sbjct: 651 DVEALLARDPGLLRPEHTLIRTLIERTDKEPAL 683


>gi|260584631|ref|ZP_05852377.1| ATP-dependent DNA helicase RecG [Granulicatella elegans ATCC
           700633]
 gi|260157654|gb|EEW92724.1| ATP-dependent DNA helicase RecG [Granulicatella elegans ATCC
           700633]
          Length = 683

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 228/670 (34%), Positives = 369/670 (55%), Gaps = 21/670 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +F  +    GVG K    L ++            DLL + P  + D      +S I ++ 
Sbjct: 5   IFQSVRFLPGVGPKRMEPLHEL------GIDTIYDLLTHFPFRYEDL-QVRDVSTIMDQE 57

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            VT+ G I           K+      +  G   I + FF +    LKN   + ++  + 
Sbjct: 58  KVTLAGIIVTEPVVHYYGFKKNRISCRMAIGEQVIQVSFFNQ--PYLKNKLIQHQECIIF 115

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVL 185
           GK    ++ ++ +    I            EAVY     +      K+I  AL      +
Sbjct: 116 GKWDAKRSTLMGMK--IISTKEDMEETSNFEAVYRTNKSIRQSTLLKLIQTALPLYKENI 173

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMR 244
           P  +   + +K+   S  EA   +H P   KD   +  +R++L Y EL   Q+ L  L +
Sbjct: 174 PNPLPASIQRKRQLLSHPEAVEGMHFP---KDEHHSKQSRQQLVYQELFCYQLKLQSLKK 230

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           K+   + G  I  E    +  ++ +PF+ T+ Q+  + +I  D+     M R+LQGDVGS
Sbjct: 231 KRHHSQKGQSILYENVALKAFIQTLPFTLTEGQKKVVNEICYDLRAPYEMSRLLQGDVGS 290

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA IAM A    G QA +M P  +LA QHYE I   T+ T+I V  +TG      R
Sbjct: 291 GKTVVATIAMVATALTGKQACLMVPTELLADQHYETICALTKETEIKVGKLTGTTTLKER 350

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R+ LE++  G+  +++GTHALFQ+ + Y+ L  +++DEQHRFGV+QR +L QK T  +VL
Sbjct: 351 RQLLEQLEKGELQLLVGTHALFQEDVIYHDLAFIVIDEQHRFGVKQRAQLAQKGTGVNVL 410

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            MTATPIPRTL +T+ G++D S + E P GR+PI+T  +    +++V + ++  +  G++
Sbjct: 411 QMTATPIPRTLAITTFGEMDTSILKEVPKGRQPIQTFWVKEQELEKVYDYIEKQVQTGRQ 470

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTC 542
           AY I P IEE +  + ++  E +  + + F +  S+ ++HGR+   +KESVM +F+    
Sbjct: 471 AYVISPLIEESENLDVQNATEIYEMISKRFENRLSVGLLHGRLKSDEKESVMTAFQKNDV 530

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L++TTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGRGE  S+CIL+  P  ++
Sbjct: 531 QVLVSTTVIEVGVDVPNATVMVILDADRFGLAQLHQLRGRVGRGEHASTCILIASPK-TE 589

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++  + DGF ++++DL+ R  G++ G++QSG+P+F +A       +LE AR+D
Sbjct: 590 QGKQRMQIMCESTDGFYLSQKDLELRGSGDVFGLRQSGIPEFKVADIVQDYDILEQARED 649

Query: 663 AKHILTQDPD 672
           A   + ++ D
Sbjct: 650 AITFVIEEED 659


>gi|227890267|ref|ZP_04008072.1| DNA helicase RecG [Lactobacillus johnsonii ATCC 33200]
 gi|227849081|gb|EEJ59167.1| DNA helicase RecG [Lactobacillus johnsonii ATCC 33200]
          Length = 679

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 218/684 (31%), Positives = 371/684 (54%), Gaps = 28/684 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF P++  +GVG K +  L+ +            DLLFY P  + D      + +I + +
Sbjct: 8   LFEPVTELKGVGAKTATALASL------GINTIYDLLFYFPFRYDDL-EIIPLDQIEDGQ 60

Query: 69  IVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            V + G +      S F  +K R  +K+ ++     I + FF +    LKN    G+++ 
Sbjct: 61  KVLLKGMVVTDPFVSRFGYRKTRLSFKMKIDHD--IIMVNFFNQ--PWLKNKVESGKEVA 116

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           V GK +  +  +       +    +D  F     +YS+   L  +  +K+I  AL   + 
Sbjct: 117 VYGKYQVARQSLSGFK---LVAEKKDSGFA---PIYSVNRHLKQNKLQKLIDLALEETIN 170

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-ALLL 242
            + E I   + +K    S       +H+P+   +      AR    + +    Q+    L
Sbjct: 171 EVGETIPASIREKYRLLSDRVLVEKMHHPKNENE---AKIARRSAIFRDFFLFQMQLAQL 227

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           + ++ +   G+    +    ++++  IPF  +  Q+  + +I  D+  K +M R+LQGDV
Sbjct: 228 LSQRNEDAPGVEKKYDLAAVKELIEEIPFELSDDQKKVVNEIFADLHSKRQMRRLLQGDV 287

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA+ A+ AAV AG QA +M P  ILAQQH+  I +  +   + V ++T +    
Sbjct: 288 GSGKTVVAVFAIYAAVTAGYQAALMVPTEILAQQHFAKIDELLKPLGVRVALLTRDTKDL 347

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +++    +A G  +++IGTHAL Q  + +  L LVI+DEQHRFGV QR  L +K  AP 
Sbjct: 348 EKKEIYRELADGTINVVIGTHALIQKDVHFKNLGLVIIDEQHRFGVNQRNTLIKKGEAPD 407

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L MTATPIPRTL LT  GD+ +S+I   P GRKP+ +     +++ EV+  ++  L +G
Sbjct: 408 ILAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLREVLGLMRSQLDKG 467

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGT 541
            + Y + P I E ++S+ ++  +    +  +F   ++ ++HG+M    K  +MDSF  G 
Sbjct: 468 FQIYVVTPLISESEKSDLKNAEDLQAKIAHYFKDENVVLLHGQMKGDQKNEIMDSFAAGK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ +  P  +
Sbjct: 528 INILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK-T 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R++++ +T +GF +AEEDLK R EG++ G  QSG+P+F +       + L  A+K
Sbjct: 587 EIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNALVTAQK 646

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
           +A++++  DP L +   + ++ +L
Sbjct: 647 EARNLIKSDPALANPENKFLQEVL 670


>gi|78212756|ref|YP_381535.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9605]
 gi|78197215|gb|ABB34980.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9605]
          Length = 812

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 236/704 (33%), Positives = 382/704 (54%), Gaps = 33/704 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  RGVG K++  L+ I            DLL Y+P   +D     +I  +    
Sbjct: 113 LDSPITQIRGVGPKFAARLASI------GLLLVRDLLRYYPRDHVDYSAMRRIEALVSGE 166

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFF-----YRKTEMLK---NVF 117
             TI   I + + F   +     I+   L D TG + +  F     +     LK    ++
Sbjct: 167 TATIVATIRRCNGFVSPRNTNLAIIELQLQDPTGRLKVSRFLAGKRFSSPAYLKGQQRLY 226

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-----FPLIEAVYSLPTGLSVDLFK 172
             G  + V+G +K     I    P     +S            +  VY L  G+  D F+
Sbjct: 227 PVGATVAVSGLVKDGPYGITFQDPLIEVLDSPSSPVKSPSIGRLLPVYPLTEGVGADRFR 286

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            +I + L      P+ +   L ++   P+++++   +H P   KD E     R RL +DE
Sbjct: 287 SLIDQVLPLAASWPDPLPALLQRQFQLPALSDSLQALHAP---KDRESLDQGRRRLVFDE 343

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKI---AQKILRNIPFSPTKSQESAIKDILQDMS 289
            L  Q+ LL  R+  +   G  ++++        + +  +PF  T +Q+   ++I  D++
Sbjct: 344 FLLMQLGLLRRRQALRSRTGPDLDLQSSSSGLVGEFMDLLPFRFTAAQQRVFQEIEVDLA 403

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           +   M R++QGDVGSGKT+VA+ A+ + + +G Q  +MAP  +LA+QHY  + ++     
Sbjct: 404 RSEPMARLVQGDVGSGKTVVAIAALLSTIASGWQGALMAPTEVLAEQHYRNLCQWLPQLH 463

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + V ++TG+ P+  RR+ L+ +A+G   +++GTHAL +D + + +L LV+VDEQHRFGV 
Sbjct: 464 VSVALLTGSTPRPRRRELLDDLANGSLKVLVGTHALLEDPVVFNRLGLVVVDEQHRFGVH 523

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI+T ++   + +
Sbjct: 524 QRDRLLNKGLQPHLLTMTATPIPRTLALSMHGDLDVSQIDELPPGRTPIRTRMLTAAKRE 583

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSD 527
           +  E ++  +  G++AY + P ++E ++   RS VE    L        ++ ++HGR+S 
Sbjct: 584 KAYELIREEVQLGQRAYVVLPLVDESEKLELRSAVEVHAELASEVFPDLAVGLLHGRLSS 643

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            DK++V+  F  G  ++L++TTV+EVG+DV +AS+++I++AE FGLAQLHQLRGRVGRG 
Sbjct: 644 ADKQAVLTDFSAGKTQVLVSTTVVEVGVDVPEASVMVIDHAERFGLAQLHQLRGRVGRGA 703

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C LL +   +  +  RL VL  + DGF IAE DL+ R  G++LG +QSG+P   +A
Sbjct: 704 AASHC-LLINGSSNPLARQRLDVLVRSTDGFEIAEMDLRLRGPGQVLGTRQSGLPDLALA 762

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
                 ++LE AR  A+ +L  DP+L   +   +R  L   Q  
Sbjct: 763 SLADDGAVLEDARTAAQELLKTDPELE--QHPLLRETLDAQQRR 804


>gi|227510455|ref|ZP_03940504.1| DNA helicase RecG [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190107|gb|EEI70174.1| DNA helicase RecG [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 691

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 226/692 (32%), Positives = 360/692 (52%), Gaps = 29/692 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L   ++  +GVG K  + L+K+            DLL Y P  + D      +S   
Sbjct: 16  LTSLNDSVAVLKGVGTKRLVALNKL------GINTINDLLTYFPRRYDDLS-IKDLSNAI 68

Query: 66  EERIVTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + VT+ G +    +     R+     +++ +ND     T+ FF +    LK       
Sbjct: 69  DGQKVTVKGMVIAPPTLTYFGRKKSRLVFRLKIND--NIYTVSFFNQ--PWLKKEVNPND 124

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +I V G   + +N+I  +         Q  N    +++Y     +     K +I  A   
Sbjct: 125 EIIVFGTYNRSRNQIQGM----KILTDQSSN--SFDSIYPANKEVKQATIKSLIKMAYDM 178

Query: 182 LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
               L   I   L  K    S  +    IH P   +  +          + E     + +
Sbjct: 179 YHTQLTNVIPDQLRAKYRLESFPDTIRNIHFPESPQAAQRAF---RTAKFMEFFLFALKV 235

Query: 241 LLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            +++    K +    I+ +  + +K  +++PF  T +Q+  +++IL D+++  +M R+LQ
Sbjct: 236 QILKESHRKTDPHAQIHYQQSLLEKFQKSLPFDLTPAQQKVVREILADLNRPIQMNRLLQ 295

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA +A+ A + A  QA IMAP  ILA+QH     K      + + ++TG+ 
Sbjct: 296 GDVGSGKTVVAAMAILATISAHKQAAIMAPTEILAEQHANNFAKMFDGLDVNIALLTGDT 355

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A RR  L  I  G+  +I+GTHALFQ+ +QY  L L ++DEQHRFGV QR  L QK T
Sbjct: 356 SAAARRAMLPSIQSGEVDLIVGTHALFQNDVQYDNLGLAVIDEQHRFGVNQRQALRQKGT 415

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           + ++L MTATPIPRTL +T  GD+D+S I + P+GRKPIKT  I   + +  I  +K  L
Sbjct: 416 STNMLAMTATPIPRTLAITMYGDMDVSIINQLPSGRKPIKTTWITSAKTNSAIRFVKKQL 475

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSF 537
             G + Y + P IEE +  + ++ V  F      F     + ++HG+MS+ +K+  M SF
Sbjct: 476 DNGNQVYVVTPLIEESEAVDMKNAVAIFERFKTIFEPQFKVGLLHGQMSNQEKDDTMVSF 535

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN   ++L+ATTVIEVG+DV +A+ ++I +A+HFGLAQLHQLRGRVGRG   S C+L+  
Sbjct: 536 KNNQFQVLVATTVIEVGVDVANANTMLIFDADHFGLAQLHQLRGRVGRGSTQSYCVLIAD 595

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           P  ++    R+  + ++ +GF ++++DL+ R +G+I G KQSGMP F +A P    ++L 
Sbjct: 596 PK-NELGKERMKAVASSTNGFFLSQKDLELRGQGDITGAKQSGMPDFKVADPVGDLNILT 654

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           +A ++A++I  +           +   L   Q
Sbjct: 655 VANQEAQNITAEKHWKNKPENVQLAKYLQFNQ 686


>gi|161507718|ref|YP_001577679.1| ATP-dependent DNA helicase RecG [Lactobacillus helveticus DPC 4571]
 gi|160348707|gb|ABX27381.1| ATP-dependent DNA [Lactobacillus helveticus DPC 4571]
          Length = 676

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 213/675 (31%), Positives = 356/675 (52%), Gaps = 22/675 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N LFAP++  +GVG K +  L      G+       DLLFY P  + D      + +I +
Sbjct: 4   NALFAPVTDLKGVGTKTAADL------GSLGIYSIYDLLFYFPFRY-DELQTLPLDQIMD 56

Query: 67  ERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            + V + G+++          K+      +      I + FF +    LK+    G ++ 
Sbjct: 57  GQKVVLKGFVATEPFVSRFGYKKSRLSFKMRIDHDVIMVNFFNQ--PWLKSKIEIGEEVA 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLP 183
           + GK    +  +      +I     D     +  +Y +   +       +I  A+   L 
Sbjct: 115 IYGKYNVARQSLSAFK--FIAAKENDSG---MAPIYPVNRHVKQKKLVSLINLAIDVFLD 169

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + + +++ +K    +  E    +H+P+ + +       +    + E    ++ L L+
Sbjct: 170 QVRDIVPENIREKYRLLTDQEIIQKMHHPKNSTEANLA---KRSAIFREFFIFELQLALL 226

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
                K+ G P N + K   ++  ++PF  +  Q+  + +I  DM    +M R+LQGDVG
Sbjct: 227 ANHDGKQAGYPKNYDLKEIAQLTSSLPFELSDDQKEVVNEIFADMHSSGQMRRLLQGDVG 286

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+ A+ AA+ AG Q  +M P  ILA QH++ I +  +   + V ++TGN     
Sbjct: 287 SGKTVVAVYAIFAAITAGYQVALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKTLE 346

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+    +  G  +++IGTHAL Q+++ + KL LVI+DEQHRFGV QR  L  K   P +
Sbjct: 347 RREIYRELMDGTINVMIGTHALIQENVIFKKLGLVIIDEQHRFGVGQRQALINKGDQPDI 406

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL LT  GD+ +S+I   PAGRKPI +      ++ +V ++++  L +G 
Sbjct: 407 LAMTATPIPRTLALTVYGDMTVSEIHHMPAGRKPIISSWKTSTQMKDVYQKMQDQLDQGF 466

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I E +  + ++  E    L   F    + ++HG+M    K+ +M +F +G  
Sbjct: 467 QIYAVTPLITESETLDLKNAEELHAKLSHDFPDQKVVLLHGQMPGPKKDEIMIAFASGEI 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ +  P  + 
Sbjct: 527 NILVTTSVIEVGVDVANANMMVIYNADRFGLSQLHQLRGRIGRGKTQSYCVFVADPK-TD 585

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +   R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F +     + + L +A+K 
Sbjct: 586 SGKARMKIIAATNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVAQKV 645

Query: 663 AKHILTQDPDLTSVR 677
           A+ ++ QDP L    
Sbjct: 646 ARDLVQQDPKLADYP 660


>gi|319401480|gb|EFV89690.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis FRI909]
          Length = 682

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 218/659 (33%), Positives = 359/659 (54%), Gaps = 18/659 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VT+
Sbjct: 13  LDKIKGIGPKRLALLEEL------NIKSVEDLVLYLPTRYEDNTVI-DLNQADDQATVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +    +     R   K+ ++     I +   +     LK        +T+ GK  + 
Sbjct: 66  QGEVYSSPTVAFFGRNKSKLTVHLMINHIAVKCVFFNQPYLKKKLELNSIVTIKGKWNRN 125

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192
           K  I        F++ ++     +E VY +  G+     +  I +ALS +  + EW+  D
Sbjct: 126 KQEINGNR--IFFNDQKNQEDAHLEPVYRVKEGIKQKQLRDNIRQALSDV-TIHEWLTDD 182

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEI 251
           L +K    ++A     +H+P   ++       R   A+ EL   ++ +  L R +   + 
Sbjct: 183 LREKYKLETLAYTIQTLHHPIDKQNLLRA---RRTYAFTELFMFELRMQWLNRLEKTSDE 239

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            I IN +    ++ + ++PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT+VA 
Sbjct: 240 AIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAA 299

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           I M A   AG Q+ +M P  ILA+QH E + +   NT   V ++TG++    RR  LE++
Sbjct: 300 ICMYALKTAGYQSALMVPTEILAEQHAESLMQLFGNTM-NVALLTGSVKGKKRRLLLEQL 358

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MTATPI
Sbjct: 359 ENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMTATPI 418

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL ++  G++D+S I + P GRKPIKT      + D+V+ ++   L +G++AY ICP 
Sbjct: 419 PRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICPL 478

Query: 492 IEEKKE-SNFRSVVERFNSLH-EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           IE  +   + ++VV  + SL  ++    + ++HG+M+  DK+ VM  F      +L++TT
Sbjct: 479 IESSEHLEDVQNVVALYESLQSDYGNEKVGLLHGKMTAEDKDQVMQKFSEHEIDILVSTT 538

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R++
Sbjct: 539 VVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERMT 597

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           ++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 598 IMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANIVEDYRMLEVARDEAAELIQ 656


>gi|268609076|ref|ZP_06142803.1| ATP-dependent DNA helicase RecG [Ruminococcus flavefaciens FD-1]
          Length = 678

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 232/689 (33%), Positives = 365/689 (52%), Gaps = 24/689 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+ +   +GVGK       K+            +L+++ P +++D      +++     
Sbjct: 5   LFSEIEYLKGVGKARGEKYRKL------GINSPYELIYHIPRTYLDFRAYVPVAQAKINE 58

Query: 69  IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              +   + +    Q  +      K    DG  +I ++ +            E     + 
Sbjct: 59  YNVLKLTVYKKMPPQRIRGGLVICKAAATDGMDDILIVVYNNVFGF--QSLKENETYYMY 116

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK+     R  +  P +I    +     LI+ VY L  GLSV++ +  + +AL  +   P
Sbjct: 117 GKVSGNFLRREISAPVFISAAEKV----LIQPVYPLTQGLSVNMVRTNMKQALELMRADP 172

Query: 187 -EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E +   +++K     +  A   IH P      E +  AR+RLA+DELL  Q+ + LM+ 
Sbjct: 173 FETLPGAVMEKYDLCPLMTALENIHFPESE---EASEAARQRLAFDELLKLQLGMSLMKS 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + ++     ++     A      +PF  T  Q+ A+ +++ D+ +   M R+LQGDVGSG
Sbjct: 230 RSRRSTAYKMD-SSISAAPFTEGLPFELTDDQKKAVSEVISDLCRDVPMNRLLQGDVGSG 288

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT VA  A     + G QA +MAP  ILA QHY  + ++ +   + V ++TG++    + 
Sbjct: 289 KTAVAAAACYFTAKNGAQAALMAPTEILASQHYRTLSEFLEPFGVKVCLLTGSLTAKKKA 348

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
              E+I  G+  +I+GTHA+ Q  ++Y  L LVI DEQHRFGV QR  L +K  +PH L+
Sbjct: 349 VIREQILSGEIDVIVGTHAIIQKDVEYRALGLVITDEQHRFGVAQRAALAEKGDSPHKLV 408

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPRTL L   GD+DIS IT+ P GRKP++T  +           +K  L EG++A
Sbjct: 409 MSATPIPRTLALIIYGDLDISAITQLPKGRKPVQTYAVTGKLRHRAFGFVKARLDEGRQA 468

Query: 486 YWICPQIE--EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IE  E      +S  E      +    S A++HGRM   +KE VM SF++G  +
Sbjct: 469 YVVCPMIEDSESDLFAVKSYAENAAK-GDLKGYSTALLHGRMRAAEKEKVMKSFRDGEIQ 527

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +LI TTV+EVG+DV +A++++IENAE FGL+QLHQLRGRVGRG+  SSCIL+     S++
Sbjct: 528 VLICTTVVEVGVDVPNAAVMVIENAERFGLSQLHQLRGRVGRGQYESSCILITD-NTSED 586

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++ +T DGF I+EEDLK R  G+  G  Q G+P   IA    +  L+  A+  A
Sbjct: 587 CVKRMKIMSSTSDGFKISEEDLKMRGPGDFFGSAQHGLPPLKIADIACNMELMNKAQNCA 646

Query: 664 KHILTQDPDLTSVRGQSIRI-LLYLYQYN 691
           + +L  DP L S   +++++ ++ L+  +
Sbjct: 647 RELLEADPQLNSPENRALKMDVMRLFNKD 675


>gi|123968352|ref|YP_001009210.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str.
           AS9601]
 gi|123198462|gb|ABM70103.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str.
           AS9601]
          Length = 815

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 244/694 (35%), Positives = 384/694 (55%), Gaps = 29/694 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           + + +S  + VGK Y   L+++            DL+ Y P +++D   R KI  +  + 
Sbjct: 120 IDSDISLIKNVGKVYKNKLNEL------GIFHIKDLINYFPRTYLDYTNRVKIINLKPDN 173

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVF 117
           + T    + +    + +K     I+   + D T  I +  F+              K+++
Sbjct: 174 LYTCIANVKRFYIHKSKKNSNLSIMNIVVFDETSSIKVTKFFLGKRFRSYSFFTSQKSLY 233

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF---PLIEAVYSLPTGLSVDLFKKI 174
             G K+ ++GK+K  +     V P        + NF     I  +YSL   LS   F K+
Sbjct: 234 TPGTKLAISGKVKLTEYGKTFVDPQIEILKDNNDNFNFSGKILPLYSLGEALSNMSFIKL 293

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           + + L      PE + K  L   S  S  E+   IH P   +    +   ++RL +DEL 
Sbjct: 294 MKKVLIYAKQYPEILNKKQLDSLSLLSKGESLINIHFPPTQQALIES---KKRLVFDELF 350

Query: 235 AGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             QI  LL +++ KK +    +  +  + ++ L   PF  TKSQE+ + +I +D+S    
Sbjct: 351 LLQIKFLLRKRKTKKNVNPQQLPQKKSLLKEFLDTFPFELTKSQENVLNEIKKDLSNPVP 410

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT++A+ ++   +E   Q  IM P  +LA+QHY+ + KY     + VE
Sbjct: 411 MSRLLQGDVGSGKTIIAIASLLLVIEKNLQGAIMVPTEVLAEQHYKNLLKYLNPLFVSVE 470

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TGN PQ  R++    + +G   I++GTHALF+D + +  L +V++DEQHRFGV QR +
Sbjct: 471 LLTGNTPQKKRKEIFSNLNNGLVDILVGTHALFEDKVIFNALGMVVIDEQHRFGVTQRNR 530

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K    ++L MTATPIPRTL L+  GD+D+S+ITE P GR PI T II  + +  + +
Sbjct: 531 LLNKGENTNLLSMTATPIPRTLALSIYGDLDVSQITELPPGRVPITTKIISEDDLTNLFK 590

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH--FTSSIAIIHGRMSDIDKE 531
            ++  +++GK+AY I P IE+ ++ N  S  + F  L E   F   + ++HG++S  +K 
Sbjct: 591 IVEDEINKGKQAYVILPLIEDSEKMNLSSAKKTFKHLSEEVFFNKKVGLLHGKLSSQEKN 650

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            V++SF      +L++TTVIEVGIDV +A+I+II N++ FGL+QLHQLRGRVGRG   S 
Sbjct: 651 EVINSFLKNEINILVSTTVIEVGIDVPNATIMIIYNSDRFGLSQLHQLRGRVGRGSTKSF 710

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C L+  P  +     RL VL+ + DGF IAE+DL+ R  G+ILG +QSG+P F++     
Sbjct: 711 CYLVT-PDKNGLENKRLCVLQKSNDGFYIAEKDLELRGPGQILGYRQSGLPDFVLDNLPN 769

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +  L++ AR++A  I++ DPDL       +R +L
Sbjct: 770 NKFLIDKAREEAIKIVSDDPDL--KENIVLRKIL 801


>gi|315640125|ref|ZP_07895247.1| DNA helicase RecG [Enterococcus italicus DSM 15952]
 gi|315484102|gb|EFU74576.1| DNA helicase RecG [Enterococcus italicus DSM 15952]
          Length = 674

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 225/665 (33%), Positives = 362/665 (54%), Gaps = 25/665 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             ++   GVGKK    L+++             LL Y+P  + D   R +++EI ++  V
Sbjct: 2   QSVAVLAGVGKKRQQALAEL------GIESIESLLTYYPFRYEDVQQR-QLAEIQDQEKV 54

Query: 71  TITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           T+ G +   +       K+   +  +        + FF +    LK+      +I V GK
Sbjct: 55  TLKGTVVSPAVMSRFGYKKTRLQFRMMQDRDVFQVSFFNQ--PYLKDKIILSEEIVVYGK 112

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPE 187
               +  +  +    IF + +  +F     VY +   +     + +I +A ++    + E
Sbjct: 113 WDAKRKALTGMK---IFGSGKQDSFA---PVYHVSKKIRQATLQDLIKQAFAQFGEQIEE 166

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +   L+ K       +A   +H P    D +    A+ R+ ++E    Q+ L  +++  
Sbjct: 167 ILPVQLVDKYRLMERKQAIYAMHFP---DDMDTYRQAKRRVVFEEFFLFQMKLQGLKQAE 223

Query: 248 KKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           K E+  + ++ + K  +  ++ +PF  T +Q+    +I  D+     M R+LQGDVGSGK
Sbjct: 224 KAEVNGLCLSYDAKQLKAFIQKLPFELTDAQKRVTNEICADLKSPKHMQRLLQGDVGSGK 283

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA IA+ A + AG Q  +M P  ILAQQH E          + V ++TG+     R+ 
Sbjct: 284 TIVAAIALYATITAGFQGALMVPTEILAQQHMESFVSLFAAMDVTVALLTGSTKTKERKH 343

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            L  I  G   I+IGTHAL Q+ + + +L LVI DEQHRFGV QR  L +K   P VL M
Sbjct: 344 ILAGIKDGSIDILIGTHALIQEDVDFAQLGLVITDEQHRFGVNQRKVLREKGWKPDVLFM 403

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL +T+ G++D+S I E P GR PI+T  +   ++D V+   K  L++G + Y
Sbjct: 404 TATPIPRTLAITAYGEMDVSLIDELPKGRIPIETRWVRPPQLDTVLHWAKKELAKGHQMY 463

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP IEE +  + ++  + +  L E F   +++ ++HG+M   +KE VM+ FK    ++
Sbjct: 464 VICPLIEESEMLDVQNAQKIYEELKEFFEPINAVGLLHGKMKPSEKEQVMEQFKENQTQI 523

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG++V +A+++II +A+ FGLAQLHQLRGRVGRG   S CIL+ +P  ++  
Sbjct: 524 LVSTTVIEVGVNVPNATLMIIIDADRFGLAQLHQLRGRVGRGVSASYCILVANPK-NEVG 582

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ V+  T +GF+++E DL  R  GEI G +QSG+P+FLIA    H ++LE+A+++A+
Sbjct: 583 KERMKVMTETTNGFVVSERDLALRGPGEIFGQRQSGLPEFLIADIVEHATVLEVAKQEAE 642

Query: 665 HILTQ 669
            I  Q
Sbjct: 643 SIWQQ 647


>gi|116629428|ref|YP_814600.1| RecG-like helicase [Lactobacillus gasseri ATCC 33323]
 gi|116095010|gb|ABJ60162.1| ATP-dependent DNA helicase RecG [Lactobacillus gasseri ATCC 33323]
          Length = 679

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 222/691 (32%), Positives = 375/691 (54%), Gaps = 31/691 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF P++  +GVG K +  L+ +            DLLFY P  + D      + +I + +
Sbjct: 8   LFEPVTELKGVGAKTATALAGL------GINTIYDLLFYFPFRYDDLETI-PLDQIEDGQ 60

Query: 69  IVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            V + G +      S F  +K R  +K+ ++     I + FF +    LK+    G+++ 
Sbjct: 61  KVLLKGIVVTDPFVSRFGYRKTRLSFKMKIDHD--IIMVNFFNQ--PWLKDKVESGKEVA 116

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           V GK +  +  +       +    ++  F     +YS+   L  +  +K+I  AL   LP
Sbjct: 117 VYGKYQVARQSLSGFK---LVAEKKESGFA---PIYSVNRHLKQNKLQKLIDLALEEVLP 170

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-ALLL 242
            + E I   L +K    S       +H+P+   +      AR    + E    Q+    L
Sbjct: 171 EVGETIPAALREKYRLLSDQILVEKMHHPKNGNE---AKLARRSAIFREFFLFQVQLAQL 227

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           + ++ +   G+    +    +++++ IPF  +  Q+  + +I  D+    +M R+LQGDV
Sbjct: 228 LSQRDEDVPGVEKRYDLAAVKELIQAIPFELSDDQKKVVNEIFADLHSPRQMKRLLQGDV 287

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA+ A+ A + AG QA +M P  ILAQQH+  + +  +   + V ++TG+  + 
Sbjct: 288 GSGKTVVAVFAIYATITAGFQAALMVPTEILAQQHFAKVDELLRPLGVRVALLTGDTKEL 347

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +++    +A G  +++IGTHAL Q  + +  L LVI+DEQHRFGV QR  L +K  AP 
Sbjct: 348 EKKEIYRELADGTINVVIGTHALIQKDVHFKNLGLVIIDEQHRFGVNQRNTLIKKGVAPD 407

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL LT  GD+ +S+I   P GRKP+ +     +++ EV+E ++  L +G
Sbjct: 408 VLAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLKEVLELMRSQLEKG 467

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGT 541
            + Y + P I E ++S+ ++  +    L  +F   ++ ++HG+M    K  +MDSF  G 
Sbjct: 468 FQIYVVTPLISESEKSDLKNAEDLQARLAHYFKDENVVLLHGQMKGDQKNEIMDSFAAGK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ +  P  +
Sbjct: 528 IDILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK-T 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R++++ +T +GF +AEEDLK R EG++ G  QSG+P+F +       + L  A+K
Sbjct: 587 EIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNTLVTAQK 646

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           +A+ ++  DP+L        + LL + +Y +
Sbjct: 647 EARALVKADPNLERPEN---KFLLEVLKYKK 674


>gi|307297520|ref|ZP_07577326.1| ATP-dependent DNA helicase RecG [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916780|gb|EFN47162.1| ATP-dependent DNA helicase RecG [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 785

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 235/694 (33%), Positives = 383/694 (55%), Gaps = 20/694 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            P+     VG+  S  L ++      +     DL+ Y P  + DR     IS I  +R V
Sbjct: 108 TPIKYAYSVGEARSKILKRM------DIETIGDLIQYFPRDYEDRRIIMPISSIVPDRKV 161

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           ++ G +   S+ +         +++DG G++ L +F +  + +       R+  + G  K
Sbjct: 162 SVKGRLLNFSAKKASGYTIISAVVSDGFGQLLLKWFNQ--DYIIQKLRRDREYLIHGLAK 219

Query: 131 KL-KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
           +     + M  P       +      I  VYSL +G+S+ + +KI+   L  +  L + +
Sbjct: 220 ETPFGPMEMNSPEIEEIQGEVPRE--ILPVYSLTSGISMKMMRKIVKRNLGLVRSLDDLV 277

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ-FK 248
              +  ++       AF  IH P+   +      ARE LAY+E    +  +L  ++Q  K
Sbjct: 278 PSSITTERGLLPRKHAFTAIHFPKSLYEI---RKARESLAYEEFFLFETTILFRKRQIRK 334

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +  G+   + G ++++++ ++PF  TK Q +A ++I  DM   + M R+LQGDVGSGKTL
Sbjct: 335 EYQGLQKEISGVLSKRLIESLPFELTKDQVTAFEEIRDDMRAASPMNRLLQGDVGSGKTL 394

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA +AM    EAG Q+ +M P  +LA QHYE IK+      I   ++TG++ +  +    
Sbjct: 395 VAELAMVDNYEAGYQSALMVPTSVLAMQHYEKIKRELSPIGIETGLLTGSLKKNEQDFVR 454

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            R+  G+  +++GTHAL QD +++  L LV+VDEQHRFGV+QR  LT K      L+MTA
Sbjct: 455 MRLKKGEIDVVVGTHALIQDGVEFKNLGLVVVDEQHRFGVKQRETLTTKGKLLDSLVMTA 514

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL LT  GD+DIS I   P GR P++T+I+   R+ ++   +   L  G +A++I
Sbjct: 515 TPIPRTLALTVYGDLDISTILTLPKGRSPVRTIILARKRLKDLYSYISDELKMGHQAFFI 574

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLI 546
            P IEE ++ + ++  +    L E     + +  +HGR++D +K+ +M  F++    +L+
Sbjct: 575 YPLIEESEQVDLKNATDEATKLREEVFPGVGVELLHGRLNDNEKQEIMQRFRSRQSMILV 634

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVGID+  A++++IE+ E FG+AQLHQLRGRVGR    S C+++ +  +S ++ +
Sbjct: 635 STTVVEVGIDIPTATVMVIEHPERFGMAQLHQLRGRVGRSNLKSICVMVMNKAISDDALS 694

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL    +T  GF +AE DL+ R  GE LG++Q GMP+FLI        LL  AR+DAK +
Sbjct: 695 RLREFASTSSGFDVAELDLRLRGPGEFLGLRQHGMPQFLIGDIVNDRDLLFKAREDAKQL 754

Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           + +DP+L  +   ++RI +    Y+E  + I  G
Sbjct: 755 MEEDPEL--LEHGALRIEMERV-YSERARLIEVG 785


>gi|119357864|ref|YP_912508.1| ATP-dependent DNA helicase RecG [Chlorobium phaeobacteroides DSM
           266]
 gi|119355213|gb|ABL66084.1| ATP-dependent DNA helicase RecG [Chlorobium phaeobacteroides DSM
           266]
          Length = 707

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 250/719 (34%), Positives = 384/719 (53%), Gaps = 36/719 (5%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  + + L   +GVG + +  LS+      A      DL  Y P  ++DR    +ISE+ 
Sbjct: 1   MTTMRSSLRALQGVGPRRADTLSE------AGIHDVGDLYDYFPRRYLDRRAMRRISELL 54

Query: 66  EERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
               VT+ G + +         R  +K+LL D TG + L++F R       +   G  + 
Sbjct: 55  NGETVTVVGRVLKTVQEGQGVARSRFKVLLADETGVLELVWF-RGVRYFSKMLATGDVLA 113

Query: 125 VTGKIKKLKNRIIMVHPHY-------------IFHNSQDVNFPLIEAVYSLP-----TGL 166
           V GK+     +  M HP +                + +  +   I ++YS        GL
Sbjct: 114 VFGKVGYFGRQAQMQHPDFDKLGSGVQASGSGESSDLELYHTGRIISLYSTSDAMKQAGL 173

Query: 167 SVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225
           S    + I+++A    P    E + +++L       + EA+  IH P      E  + AR
Sbjct: 174 SSRQLRMILLKAFDDHPPGREENLSEEMLAAHGLMPLGEAYREIHFPATQ---ETLAAAR 230

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDI 284
            RL + EL   Q+   L R++ ++       +  G+I +K+   +PF  T +Q++ I++I
Sbjct: 231 YRLKWTELFYAQLLFALRRQEIRQNKTAARFDHSGEITRKLYEALPFDLTGAQKTVIREI 290

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
            QD+     M R+LQGDVGSGKTLVA+ ++A A + G Q+  MAP  ILA QHY  +K+ 
Sbjct: 291 YQDLRSGCPMNRLLQGDVGSGKTLVAMFSIALAADNGLQSAFMAPTEILAVQHYLALKRA 350

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
            Q   + V +++G   +  R   L  + +G   I +GTHA+ ++ +    L LVI+DEQH
Sbjct: 351 FQPLGLNVGLLSGRQRKKERDAVLGDLRNGTIAIAVGTHAMIEEGVTMAALGLVIIDEQH 410

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           RFGV QR  L +KA  PHVLLMTATPIPRTL +   GD+D+S I E P GR+P+ T ++ 
Sbjct: 411 RFGVLQRKALQEKALNPHVLLMTATPIPRTLCMGVFGDLDVSVINEMPPGRQPVVTKLLA 470

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIH 522
            N   E    +   + +G++AY + P +EE ++ + ++ V+RF+ L  +  S   + +IH
Sbjct: 471 GNETGEAYTSIIREVQKGRQAYIVYPMVEESEKIDLKAAVDRFDFLTANIFSDLRLGLIH 530

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GRM+   KESVMD F+NG   +L+ TTVIEVG+DV +A+I++IE+AE FGLAQLHQLRGR
Sbjct: 531 GRMTTESKESVMDEFRNGRIDVLVGTTVIEVGVDVPNATIMMIEHAERFGLAQLHQLRGR 590

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG   S+C L Y    + ++  RL  +++  DGF I++ D + R  G ILG +QSG  
Sbjct: 591 VGRGSHPSTCFLCY-EKTAPDALRRLHAMESVADGFRISKIDAEIRGTGNILGKEQSGAA 649

Query: 643 -KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
               IA  +  +++L IAR +A  ++ +D  L       IR   YL  Y+E +     G
Sbjct: 650 SGLKIADLQHDEAILNIARTEAFALVAKDSQLRMPEHAMIRT-CYLRHYHERYALADIG 707


>gi|227513464|ref|ZP_03943513.1| DNA helicase RecG [Lactobacillus buchneri ATCC 11577]
 gi|227524607|ref|ZP_03954656.1| DNA helicase RecG [Lactobacillus hilgardii ATCC 8290]
 gi|227083337|gb|EEI18649.1| DNA helicase RecG [Lactobacillus buchneri ATCC 11577]
 gi|227088282|gb|EEI23594.1| DNA helicase RecG [Lactobacillus hilgardii ATCC 8290]
          Length = 727

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 228/692 (32%), Positives = 359/692 (51%), Gaps = 29/692 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L   ++  +GVG K  + L+K+            DLL Y P  + D      +S   
Sbjct: 52  LTSLNDSVAVLKGVGTKRLVALNKL------GINTINDLLTYFPRRYDDLS-IKDLSNAI 104

Query: 66  EERIVTITGYISQHSSFQLQKRRP----YKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + VT+ G +    +     R+     +++ +ND     T+ FF +    LK       
Sbjct: 105 DGQKVTVKGMVIAPPTLTYFGRKKSRLVFRLKIND--NIYTVSFFNQ--PWLKREVNSND 160

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +I V G   + +N+I  +         Q  N    +++Y     +     K +I  A   
Sbjct: 161 EIIVFGTYNRSRNQIQGM----KILTDQSSN--SFDSIYPASKEVKQATIKSLIKMAYDM 214

Query: 182 LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
               L   I   L  K    S  +    IH P   K  +          + E     + +
Sbjct: 215 YHTQLTNVIPDKLRAKYRLESFPDTIRNIHFPESPKAAQRAF---RTAKFMEFFLFAMKV 271

Query: 241 LLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            ++R    K +    I+ +  + +K  +++PF  T +Q+   ++IL D+++  +M R+LQ
Sbjct: 272 QILRESHRKTDPHAQIHYQQSLLEKFQKSLPFDLTPAQQKVAREILADLNRPIQMNRLLQ 331

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA +A+ A + A  QA IMAP  ILA+QH     K      + + ++TG+ 
Sbjct: 332 GDVGSGKTVVAAMAILATISAHKQAAIMAPTEILAEQHANNFAKMFDGLDVNIALLTGDT 391

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A RR  L  I  G+  +I+GTHALFQ+ +QY  L L ++DEQHRFGV QR  L QK T
Sbjct: 392 SAAARRAMLPSIQSGEVDLIVGTHALFQNDVQYDNLGLAVIDEQHRFGVNQRQALRQKGT 451

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           + ++L MTATPIPRTL +T  GD+D+S I + P+GRKPIKT  I   + +  I  +K  L
Sbjct: 452 STNMLAMTATPIPRTLAITMYGDMDVSIINQLPSGRKPIKTTWITSAKTNSAIRFVKKQL 511

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSF 537
             G + Y + P IEE +  + ++ V  F      F     + ++HG+MS+ +K+  M SF
Sbjct: 512 DNGNQVYVVTPLIEESEAVDMKNAVAIFERFKTIFEPQFKVGLLHGQMSNQEKDDTMVSF 571

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN   ++L+ATTVIEVG+DV +A+ ++I +A+HFGLAQLHQLRGRVGRG   S C+L+  
Sbjct: 572 KNNQFQVLVATTVIEVGVDVANANTMLIFDADHFGLAQLHQLRGRVGRGSTQSYCVLIAD 631

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           P  ++    R+  + ++ +GF ++++DL+ R +G+I G KQSGMP F +A P    ++L 
Sbjct: 632 PK-NEVGKERMKAVASSTNGFFLSQKDLELRGQGDITGAKQSGMPDFKVADPVGDLNILT 690

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           +A ++A++I  +           +   L   Q
Sbjct: 691 VANQEAQNITAEKHWKNKPENVQLAKYLQFNQ 722


>gi|191638602|ref|YP_001987768.1| ATP-dependent DNA helicase RecG [Lactobacillus casei BL23]
 gi|190712904|emb|CAQ66910.1| ATP-dependent DNA helicase, RecG [Lactobacillus casei BL23]
          Length = 679

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 215/684 (31%), Positives = 365/684 (53%), Gaps = 23/684 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L  P++   GVG K    L+ +            DLLFY P  + D      ++E +++
Sbjct: 2   ALTDPVTVLPGVGPKREAGLASL------GIHTIRDLLFYFPYRYDDL-KVKDLAEAADQ 54

Query: 68  RIVTITGYISQHSSFQLQK--RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
             +T+ G +            R    + L      I + FF +    LK+ F  G +  +
Sbjct: 55  EKLTVKGIVVTDPVISRFGPHRSRVNVKLQIERSVILVTFFNQ--PWLKDRFQMGDEAAI 112

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV- 184
            GK    +  +  +        +Q  + P + A+Y++   + +     +I  A  R    
Sbjct: 113 FGKWDAKRRSLTGM----KILATQSQDQPSMAAIYTVNKNVRMGTLLDLIKAAWERDQQN 168

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + + +   + +     S A+  + +H P    +      AR    + E    Q+ +  ++
Sbjct: 169 INDLVPASIREHYRLMSDAQLVHGMHFPDTPAE---AKAARRTGVFREFFLFQLQIQALK 225

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +       G+ I  + +  + ++  +PF+ T +Q+  + +I  DM + N M R+LQGDVG
Sbjct: 226 QLNANSSNGLAIPYDNQALRALIATLPFALTNAQKRVVNEICADMRRPNHMNRLLQGDVG 285

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AAV AG QA +M P  +LA+QH+  + K  ++  + + ++TG+     
Sbjct: 286 SGKTVVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTSTKK 345

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  +  G+ ++IIGTHAL Q  + ++ L LV++DEQHRFGV QR  L +K   P +
Sbjct: 346 RRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVIDEQHRFGVNQRKILQEKGQKPDL 405

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRKPI T+ +  N+ID+V   ++  +  G 
Sbjct: 406 LSMTATPIPRTLAITAYGEMDVSTIDELPAGRKPIATMWLRKNQIDQVYRIIREQVQSGS 465

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGT 541
           + + I P I E ++ + ++  + F  + +       +A++HG+M   +K+ +M +F +G 
Sbjct: 466 QVFAITPLIAESEKIDLQNAEQLFVDMQKAVGNLGPVALLHGQMKPDEKDQIMRAFSDGK 525

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTV+EVG+D+ +A+++ I +A+ FGL+QLHQLRGRVGRG++ + C+L+  P  +
Sbjct: 526 IAVLVSTTVVEVGVDIPNATVMAIFDADRFGLSQLHQLRGRVGRGQKAAQCLLIADPK-N 584

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T DGFL+A++DL+ R  G+I G KQSG+P+F +A P      LE A+K
Sbjct: 585 EQGIARMEIMTKTNDGFLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEAAQK 644

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
               I   DP L     Q +   L
Sbjct: 645 IVAQIFKTDPHLLQSDHQPLAAYL 668


>gi|325280602|ref|YP_004253144.1| ATP-dependent DNA helicase RecG [Odoribacter splanchnicus DSM
           20712]
 gi|324312411|gb|ADY32964.1| ATP-dependent DNA helicase RecG [Odoribacter splanchnicus DSM
           20712]
          Length = 699

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 238/702 (33%), Positives = 366/702 (52%), Gaps = 26/702 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER--IV 70
           +    GVG+K +  L + +         + D+L++ P  +IDR     I+E++  R   +
Sbjct: 8   IKFLPGVGEKKAAVLYEELQ-----VQSYEDMLYHVPFKYIDRSKIYSIAELN-GRLPYI 61

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
            I   I    +    K         D TG + L++F +  + L N     ++  + G+  
Sbjct: 62  QIKAKIRNLKTIGEGKALRMTATAYDETGTLELVWF-KGFKFLTNQIEPDKEYLIFGQPS 120

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEALSRLP-V 184
           +  +++ +VHP               +AVY          L+     KI       +   
Sbjct: 121 EFNHKLNIVHPEIDSFEKASQLLVGFQAVYPTTEKMKKAFLNSKAISKIQDSIFKTIKGK 180

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E +    +Q+     + EA   IH P      +    A  RL ++EL   Q+ +L ++
Sbjct: 181 ISETLPAWFIQQHKLMYLHEALYNIHFPENP---DMLRKALFRLKFEELFYIQLNILKLK 237

Query: 245 -KQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            K+     G      G+       R +PF  T +Q+  IK+I QD     +M R+LQGDV
Sbjct: 238 YKRKTYFKGHEFKTIGEYFNTFYHRYLPFELTDAQKRVIKEIRQDCGSGKQMNRLLQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA++ M  A++   Q  +MAP  ILA QHYE I+       I V ++TG+  + 
Sbjct: 298 GSGKTLVAVMCMLMALDNCCQTCLMAPTEILATQHYETIQGMLGEMGITVALLTGSTKKR 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-AP 421
            R +    +  G   I+IGTHAL +D + +  + LVI+DEQHRFGV QR KL QK T  P
Sbjct: 358 EREEIHRGLQDGSLQILIGTHALLEDVVSFQNIGLVIIDEQHRFGVAQRAKLWQKNTIPP 417

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           HVL+MTATPIPRTL +T  GD+D+S I E P GRKPI T      +  EV + ++  L +
Sbjct: 418 HVLVMTATPIPRTLAMTLYGDLDVSVIDELPPGRKPITTFHAFDKKRLEVFQFIEKELLK 477

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFK 538
           G++AY + P I E ++ +FR++ E +  ++ +F      + ++HG++   +K+S M  F 
Sbjct: 478 GRQAYVVYPLIYESEKMDFRNLEEGYEQINNYFLPKGYKVGMVHGKLKPAEKDSEMRRFV 537

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               K+L++TTVIEVG++V +ASI++IE+AE FGL+QLHQLRGRVGRG + S CIL+   
Sbjct: 538 TAETKILVSTTVIEVGVNVPNASIMVIESAERFGLSQLHQLRGRVGRGADQSYCILMTSY 597

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLE 657
            +S +S  R+  +  T DGF IAE DLK R  G+I G +QSG+     +A       +L 
Sbjct: 598 KISNDSRKRIDTMTATNDGFEIAEADLKLRGPGDIEGTQQSGLTCSLKVANLGKDTLILN 657

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILL-YLYQYNEAFQFIR 698
            A + A  IL++D DL     Q   I +  L++    +++I 
Sbjct: 658 EATRIANGILSEDADLIKEENQLFAIQIKRLFKTRITWRYIS 699


>gi|282927567|ref|ZP_06335183.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A10102]
 gi|282590570|gb|EFB95647.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A10102]
          Length = 686

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 215/658 (32%), Positives = 361/658 (54%), Gaps = 18/658 (2%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VTI G 
Sbjct: 16  LKGIGPKKIEVLQQL------NIHTVEDLVLYLPTRYEDNTVI-DLNQAEDQSNVTIEGQ 68

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           +          R   K+ ++     I +   +     LK      + ITV GK  ++K  
Sbjct: 69  VYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQE 128

Query: 136 IIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
           I      +    +Q        +E VY +  G+     +  I +AL+ +  + EW+  +L
Sbjct: 129 ITGNRVFFNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDV-TIHEWLTDEL 187

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIG 252
            +K    ++    N +H+P+  +D       R   A+ EL   ++ +  L R +   +  
Sbjct: 188 REKYKLETLDFTLNTLHHPKSKEDLLRA---RRTYAFTELFLFELRMQWLNRLEKSSDEA 244

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           I I+ +    +  +  +PF  T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I
Sbjct: 245 IEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAI 304

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M A   AG Q+ +M P  ILA+QH E +     ++   V ++TG++    R+  LE++ 
Sbjct: 305 CMYALKTAGYQSALMVPTEILAEQHAESLMALFADSM-NVALLTGSVKGKKRKILLEQLE 363

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +G    +IGTHAL QD + ++ + LVI DEQHRFGV QR  L +K    +VL MTATPIP
Sbjct: 364 NGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIP 423

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY ICP I
Sbjct: 424 RTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLI 483

Query: 493 EEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E  +   + ++VV  + SL +++  S + ++HG++S  +K+ VM  F N    +L++TTV
Sbjct: 484 ESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTV 543

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR ++ S C+L+  P  ++    R+++
Sbjct: 544 VEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTI 602

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 603 MTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQ 660


>gi|294787729|ref|ZP_06752973.1| ATP-dependent DNA helicase RecG [Simonsiella muelleri ATCC 29453]
 gi|294484022|gb|EFG31705.1| ATP-dependent DNA helicase RecG [Simonsiella muelleri ATCC 29453]
          Length = 680

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 238/659 (36%), Positives = 364/659 (55%), Gaps = 15/659 (2%)

Query: 23  YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF 82
            +  L K+      +     DL  + P  + D      I+      I  + G +  H   
Sbjct: 15  IANKLEKL------HLHSAWDLALHLPLRYEDETQIIPIAAAPIGEICQVEGVVL-HQEI 67

Query: 83  QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142
           Q + R+     + D +G    L F       +    +G  +   G+IK+      M+HP 
Sbjct: 68  QFKPRKQLIARIKDDSGACLNLRFIHFYPNHQKQLAQGATVRALGEIKRGFYGDEMIHPK 127

Query: 143 YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSI 202
            +     +     +  +Y    GL+    +K +  AL  +  L E + + LL+    PS+
Sbjct: 128 -LKSPENNKLAQSLTPIYPTTNGLNQPTLRKAVQAALDAVD-LTEVLPEKLLKSLKLPSL 185

Query: 203 AEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258
           AE+   +HNP      +  +    PA +RL +DELLA Q+++ L R++ K     P+   
Sbjct: 186 AESLRTLHNPPPELSMQTLADGAFPAWQRLKFDELLAQQLSMRLARQRRKSGNAKPLIGN 245

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G +++K+L N+PF  T +Q+    +I  D++    M R+LQGDVGSGKT+VA ++   A+
Sbjct: 246 GVLSKKLLANLPFRLTHAQQRVCDEIRADLANHVPMHRLLQGDVGSGKTIVAALSALVAL 305

Query: 319 E-AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           E  G Q  IMAP  ILA+QH+   K++ +   I V  ++G++ +  + +A   +A+G+  
Sbjct: 306 ECEGVQVAIMAPTEILAEQHFIKFKQWFETLGIRVAWLSGSLKKKAKDEAKAALANGEIR 365

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           +++GTHALFQD + +  L LVIVDEQHRFGV QRL L  K    H L+M+ATPIPRTL +
Sbjct: 366 VVVGTHALFQDDVLFDNLGLVIVDEQHRFGVAQRLALKNKGQDVHQLMMSATPIPRTLAM 425

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           + L D+D+S I E P  R PIKT ++   R ++V   +     +G++AYW+CP IEE + 
Sbjct: 426 SFLADLDVSSIDELPPNRTPIKTKLVNQLRRNDVEGFVLSTCQKGQQAYWVCPLIEESET 485

Query: 498 SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              ++  +    L  H  S +I ++HGRM   +K +VM  F +G+  +L+ATTVIEVG+D
Sbjct: 486 LQLQTATDTLAELQNHLPSLNIGLVHGRMKAAEKAAVMSEFISGSLNVLVATTVIEVGVD 545

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +AS+++IE+AE  GLAQLHQLRGRVGRG   S+C+LL+  PL + S  RL V+    D
Sbjct: 546 VPNASLMVIEHAERMGLAQLHQLRGRVGRGAVASTCVLLFAEPLGQVSKARLKVIHEHTD 605

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           GF IA +DL+ R  GE LG +QSG P    A  +    LLE AR+ A  ++  +PD+ +
Sbjct: 606 GFEIARQDLEIRGPGEFLGARQSGAPMLRFADLQTDMVLLEQARQAAADLVAHEPDVVA 664


>gi|57651795|ref|YP_186101.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161257|ref|YP_493817.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194933|ref|YP_499733.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221349|ref|YP_001332171.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|258452524|ref|ZP_05700530.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A5948]
 gi|262048125|ref|ZP_06021012.1| ATP-dependent DNA helicase [Staphylococcus aureus D30]
 gi|282920009|ref|ZP_06327738.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9765]
 gi|284024151|ref|ZP_06378549.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848220|ref|ZP_06788967.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9754]
 gi|304381210|ref|ZP_07363863.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|3914612|sp|O50581|RECG_STAA8 RecName: Full=ATP-dependent DNA helicase recG
 gi|81694656|sp|Q5HGK6|RECG_STAAC RecName: Full=ATP-dependent DNA helicase recG
 gi|2826896|dbj|BAA24572.1| RecG [Staphylococcus aureus]
 gi|57285981|gb|AAW38075.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127231|gb|ABD21745.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202491|gb|ABD30301.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374149|dbj|BAF67409.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|257859742|gb|EEV82584.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A5948]
 gi|259163691|gb|EEW48246.1| ATP-dependent DNA helicase [Staphylococcus aureus D30]
 gi|269940719|emb|CBI49100.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282594725|gb|EFB99709.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9765]
 gi|294825020|gb|EFG41442.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9754]
 gi|304340193|gb|EFM06134.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315198464|gb|EFU28793.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140958|gb|EFW32805.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144327|gb|EFW36093.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329313896|gb|AEB88309.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329724736|gb|EGG61241.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329728777|gb|EGG65198.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 686

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 215/658 (32%), Positives = 361/658 (54%), Gaps = 18/658 (2%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VTI G 
Sbjct: 16  LKGIGPKKIEVLQQL------NIHTVEDLVLYLPTRYEDNTVI-DLNQAEDQSNVTIEGQ 68

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           +          R   K+ ++     I +   +     LK      + ITV GK  ++K  
Sbjct: 69  VYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQE 128

Query: 136 IIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
           I      +    +Q        +E VY +  G+     +  I +AL+ +  + EW+  +L
Sbjct: 129 ITGNRVFFNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDV-TIHEWLTDEL 187

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIG 252
            +K    ++    N +H+P+  +D       R   A+ EL   ++ +  L R +   +  
Sbjct: 188 REKYKLETLDFTLNTLHHPKSKEDLLRA---RRTYAFTELFLFELRMQWLNRLEKSSDEA 244

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           I I+ +    +  +  +PF  T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I
Sbjct: 245 IEIDYDIDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAI 304

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M A   AG Q+ +M P  ILA+QH E +     ++   V ++TG++    R+  LE++ 
Sbjct: 305 CMYALKTAGYQSALMVPTEILAEQHAESLMALFGDSM-NVALLTGSVKGKKRKILLEQLE 363

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +G    +IGTHAL QD + ++ + LVI DEQHRFGV QR  L +K    +VL MTATPIP
Sbjct: 364 NGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIP 423

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY ICP I
Sbjct: 424 RTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLI 483

Query: 493 EEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E  +   + ++VV  + SL +++  S + ++HG++S  +K+ VM  F N    +L++TTV
Sbjct: 484 ESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEINVLVSTTV 543

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR ++ S C+L+  P  ++    R+++
Sbjct: 544 VEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTI 602

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 603 MTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQ 660


>gi|238026276|ref|YP_002910507.1| ATP-dependent DNA helicase RecG [Burkholderia glumae BGR1]
 gi|237875470|gb|ACR27803.1| ATP-dependent DNA helicase RecG [Burkholderia glumae BGR1]
          Length = 803

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 249/671 (37%), Positives = 375/671 (55%), Gaps = 29/671 (4%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      I E+    +    G +   + 
Sbjct: 123 KTADKLAKL------GLTRSIDLVLHLPMRYEDETTLTPIRELLPGEVAQTEGVVYD-NE 175

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G I+     + +VH
Sbjct: 176 ITYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDIRGGFFGLEIVH 234

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 235 PAVRVVDENTPLAQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEVAAAYLQP 293

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P++A+A   +H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 294 LGVPTLADAVRQLHHPAVDDDETALIDGTHPAWIRIKFDELLAQQLSLKRAHEERRTRAA 353

Query: 253 IPINVE-----GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +        G +A ++L  +PF+ T +Q   + +I  D++Q + M R+LQGDVGSGKT
Sbjct: 354 PAMPRRAPADAGSLAARLLAALPFALTGAQARVVDEISHDLTQPHPMQRLLQGDVGSGKT 413

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 414 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVTVAWLAGSLKAKDKRAA 473

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-----TAPH 422
           +E  A G A ++IGTHA+ QDS+++ +L LVIVDEQHRFGV QRL L  KA       PH
Sbjct: 474 IEAAALGTAQLVIGTHAIIQDSVEFARLGLVIVDEQHRFGVAQRLALRAKAGGPAGFQPH 533

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+M+ATPIPRTL +T   D+++S I E P GR PI T ++   R +EVI R++     G
Sbjct: 534 QLMMSATPIPRTLAMTYYADLEVSTIDELPPGRSPIVTKLVGDARREEVIARVRDAALGG 593

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VM++F    
Sbjct: 594 RQVYWVCPLIEESETLQLQTAVETYETLVAALPGIQVGLVHGRLAPAEKAAVMEAFSRNE 653

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S+C+L+Y  PLS
Sbjct: 654 VQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASACVLMYSGPLS 713

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR+
Sbjct: 714 IAGRERLKTMRETNDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLERDGWLIEPARE 773

Query: 662 DAKHILTQDPD 672
            A  ++ + PD
Sbjct: 774 AAGVLIARYPD 784


>gi|307728506|ref|YP_003905730.1| ATP-dependent DNA helicase RecG [Burkholderia sp. CCGE1003]
 gi|307583041|gb|ADN56439.1| ATP-dependent DNA helicase RecG [Burkholderia sp. CCGE1003]
          Length = 755

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 251/674 (37%), Positives = 372/674 (55%), Gaps = 33/674 (4%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      I  +    I    G +   + 
Sbjct: 71  KTADKLAKL------GLTRDIDLVLHLPMRYEDETSLTPIGHLLPGGIAQTEGVVFD-NE 123

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G ++ V G ++     + MVH
Sbjct: 124 IAYRPRRQLLVKLRDDAGDELVLRFLNFYGSQVKQM-AIGARLRVRGDVRGGFFGMEMVH 182

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  ALSR   LPE + + +    L+ 
Sbjct: 183 PAVRVVDEDTPLPQALTPVYPSTAGVSQAYLRKAIDNALSRTS-LPELLPEAVARQWLEP 241

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              PS+ +A   +H+P    D     + T PA  R+ ++ELLA Q++L    ++ +    
Sbjct: 242 LGVPSLMDAVRTLHHPGAQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHEERRTRAA 301

Query: 253 IPINV-----EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +       E  +  ++L  +PFS T++QE    +I  D++Q + M R+LQGDVGSGKT
Sbjct: 302 PAMPRRKLGDESALVARLLAALPFSLTRAQERVGGEIALDLTQPHPMQRLLQGDVGSGKT 361

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 362 IVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKEKRAA 421

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           +E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 422 IEAAALGTAQLVIGTHAIIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKARNAADGARD 481

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R +EVI R++  
Sbjct: 482 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREA 541

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L       ++ ++HGR++  +K +VMD+F
Sbjct: 542 ALTGRQVYWVCPLIEESETLQLQTAVETYETLVAALPELNVGLVHGRLAPAEKAAVMDAF 601

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 602 TRNEVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYT 661

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 662 GPLSMTARARLQTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDQWLIE 721

Query: 658 IARKDAKHILTQDP 671
            AR+ A  +L Q P
Sbjct: 722 PAREAAAVLLEQYP 735


>gi|238852577|ref|ZP_04642987.1| ATP-dependent DNA helicase RecG [Lactobacillus gasseri 202-4]
 gi|238834723|gb|EEQ26950.1| ATP-dependent DNA helicase RecG [Lactobacillus gasseri 202-4]
          Length = 679

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 222/691 (32%), Positives = 375/691 (54%), Gaps = 31/691 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF P++  +GVG K +  L+ +            DLLFY P  + D      + +I + +
Sbjct: 8   LFEPVTELKGVGAKTATALAGL------GINTIYDLLFYFPFRYDDLETI-PLDQIEDGQ 60

Query: 69  IVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            V + G +      S F  +K R  +K+ ++     I + FF +    LK+    G+++ 
Sbjct: 61  KVLLKGIVVTDPFVSRFGYRKTRLSFKMKIDHD--IIMVNFFNQ--PWLKDKVESGKEVA 116

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           V GK +  +  +       +    ++  F     +YS+   L  +  +K+I  AL   LP
Sbjct: 117 VYGKYQVARQSLSGFK---LVAEKKESGFA---PIYSVNRHLKQNKLQKLIDLALEEVLP 170

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-ALLL 242
            + E I   L +K    S       +H+P+   +      AR    + E    Q+    L
Sbjct: 171 EVGETIPAALREKYRLLSDQILVEKMHHPKNGNE---AKLARRSAIFREFFLFQVQLAQL 227

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           + ++ +   G+    +    +++++ IPF  +  Q+  + +I  D+    +M R+LQGDV
Sbjct: 228 LSQRDEDVPGMEKRYDLAAVKELIQAIPFELSDDQKKVVNEIFADLHSPRQMKRLLQGDV 287

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA+ A+ A + AG QA +M P  ILAQQH+  + +  +   + V ++TG+  + 
Sbjct: 288 GSGKTVVAVFAIYATITAGFQAALMVPTEILAQQHFAKVDELLRPLGVRVALLTGDTKEL 347

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +++    +A G  +++IGTHAL Q  + +  L LVI+DEQHRFGV QR  L +K  AP 
Sbjct: 348 EKKEIYRELADGTINVVIGTHALIQKDVHFKNLGLVIIDEQHRFGVNQRNTLIKKGVAPD 407

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL LT  GD+ +S+I   P GRKP+ +     +++ EV+E ++  L +G
Sbjct: 408 VLAMTATPIPRTLALTVYGDMAVSEIHHLPKGRKPVVSSWATSSKLKEVLELMRSQLEKG 467

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGT 541
            + Y + P I E ++S+ ++  +    L  +F   ++ ++HG+M    K  +MDSF  G 
Sbjct: 468 FQIYVVTPLISESEKSDLKNAEDLQARLAHYFKDENVVLLHGQMKGDQKNEIMDSFAAGK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ +  P  +
Sbjct: 528 IDILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK-T 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R++++ +T +GF +AEEDLK R EG++ G  QSG+P+F +       + L  A+K
Sbjct: 587 EIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNTLVTAQK 646

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           +A+ ++  DP+L        + LL + +Y +
Sbjct: 647 EARALIKADPNLERPEN---KFLLEVLKYKK 674


>gi|70726688|ref|YP_253602.1| ATP-dependent DNA helicase RecG [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447412|dbj|BAE04996.1| ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435]
          Length = 683

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 215/660 (32%), Positives = 355/660 (53%), Gaps = 17/660 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL + +G+G K    L ++      N     DL+ Y P+ + D      ++   ++  VT
Sbjct: 12  PLQSIKGLGPKRIALLQEL------NINTVEDLVLYLPTRYEDNT-VVDLNMAEDQSTVT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +    +     R   K+ ++     I +   +     LK        +TV GK  +
Sbjct: 65  IVGEVYSMPTVAFFGRNKSKLTVHLMVDNIAVKCIFFNQPYLKKKIELHGTVTVKGKWNR 124

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
            K  I      +    SQD +   +E VY +  G+     + +I + L  +  + EW+ +
Sbjct: 125 AKQEINGNR-MFFNEQSQDTSEIKLEPVYRIKEGIKQKQMRDMIYQTLDDV-TIHEWLTE 182

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKE 250
           +L QK    S+ +  + +H P+  +D       R   A+ EL   ++ +  L R +   +
Sbjct: 183 ELKQKYKLESLEDTLHALHRPKDRQDLLRA---RRTYAFTELFMFELRMQWLNRLEKSSD 239

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             I IN + +  +  +  +PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT+VA
Sbjct: 240 EAIEINYDIQKVKDFIETLPFELTDAQKKSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVA 299

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            I M A   AG Q+ +M P  ILA+QH   + +        V ++TG++    R+  LE+
Sbjct: 300 AICMYALKTAGYQSALMVPTEILAEQHANSLTELFGEYM-NVALLTGSVKGKKRKVLLEQ 358

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           + +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MTATP
Sbjct: 359 LENGTIDCLIGTHALIQDDVTFQNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATP 418

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL ++  G++D+S I + P GRKPI T      + ++V+ ++   L +G++AY ICP
Sbjct: 419 IPRTLAISVFGEMDVSSIKQLPKGRKPIITNWAKHEQYEQVLSQMTSELKKGRQAYVICP 478

Query: 491 QIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            IE  +   + ++VVE + SL  H+    + ++HG+M   +K+ VM  F      +L++T
Sbjct: 479 LIESSEHLEDVQNVVELYESLKLHYGEKKVGLLHGKMPAEEKDEVMTRFSQHEIDILVST 538

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R+
Sbjct: 539 TVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERM 597

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +++  T DGF ++E DL+ R  G+  G+KQSG+P F++A       +LE+AR +   ++ 
Sbjct: 598 TIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFMVANIVEDYRMLEVARDEVAELIQ 657


>gi|15924217|ref|NP_371751.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926810|ref|NP_374343.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus N315]
 gi|148267718|ref|YP_001246661.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393776|ref|YP_001316451.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979548|ref|YP_001441807.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253315585|ref|ZP_04838798.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253731844|ref|ZP_04866009.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733535|ref|ZP_04867700.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006014|ref|ZP_05144615.2| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795717|ref|ZP_05644696.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9781]
 gi|258415941|ref|ZP_05682211.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9763]
 gi|258419688|ref|ZP_05682655.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9719]
 gi|258434860|ref|ZP_05688934.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A9299]
 gi|258444564|ref|ZP_05692893.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A8115]
 gi|258447603|ref|ZP_05695747.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A6300]
 gi|258449445|ref|ZP_05697548.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A6224]
 gi|258454824|ref|ZP_05702788.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A5937]
 gi|269202842|ref|YP_003282111.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892713|ref|ZP_06300948.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A8117]
 gi|295407165|ref|ZP_06816966.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A8819]
 gi|296275248|ref|ZP_06857755.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297245949|ref|ZP_06929808.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A8796]
 gi|54039024|sp|P64325|RECG_STAAN RecName: Full=ATP-dependent DNA helicase recG
 gi|54041651|sp|P64324|RECG_STAAM RecName: Full=ATP-dependent DNA helicase recG
 gi|13701027|dbj|BAB42322.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246997|dbj|BAB57389.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147740787|gb|ABQ49085.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946228|gb|ABR52164.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721683|dbj|BAF78100.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253724443|gb|EES93172.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728589|gb|EES97318.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257789689|gb|EEV28029.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9781]
 gi|257839277|gb|EEV63751.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9763]
 gi|257844273|gb|EEV68655.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9719]
 gi|257849221|gb|EEV73203.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A9299]
 gi|257850057|gb|EEV74010.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A8115]
 gi|257853794|gb|EEV76753.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A6300]
 gi|257857433|gb|EEV80331.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A6224]
 gi|257863207|gb|EEV85971.1| ATP-dependent DNA helicase recG [Staphylococcus aureus A5937]
 gi|262075132|gb|ACY11105.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282764710|gb|EFC04835.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A8117]
 gi|285816909|gb|ADC37396.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus 04-02981]
 gi|294968018|gb|EFG44046.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A8819]
 gi|297177113|gb|EFH36367.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A8796]
 gi|312829621|emb|CBX34463.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315131018|gb|EFT87002.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727162|gb|EGG63618.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 686

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 215/658 (32%), Positives = 361/658 (54%), Gaps = 18/658 (2%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VTI G 
Sbjct: 16  LKGIGPKKIEVLQQL------NIHTVEDLVLYLPTRYEDNTVI-DLNQAEDQSNVTIEGQ 68

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           +          R   K+ ++     I +   +     LK      + ITV GK  ++K  
Sbjct: 69  VYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQE 128

Query: 136 IIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
           I      +    +Q        +E VY +  G+     +  I +AL+ +  + EW+  +L
Sbjct: 129 ITGNRVFFNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDV-TIHEWLTDEL 187

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIG 252
            +K    ++    N +H+P+  +D       R   A+ EL   ++ +  L R +   +  
Sbjct: 188 REKYKLETLDFTLNTLHHPKSKEDLLRA---RRTYAFTELFLFELRMQWLNRLEKSSDEA 244

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           I I+ +    +  +  +PF  T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I
Sbjct: 245 IEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAI 304

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M A   AG Q+ +M P  ILA+QH E +     ++   V ++TG++    R+  LE++ 
Sbjct: 305 CMYALKTAGYQSALMVPTEILAEQHAESLMALFGDSM-NVALLTGSVKGKKRKILLEQLE 363

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +G    +IGTHAL QD + ++ + LVI DEQHRFGV QR  L +K    +VL MTATPIP
Sbjct: 364 NGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIP 423

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY ICP I
Sbjct: 424 RTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLI 483

Query: 493 EEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E  +   + ++VV  + SL +++  S + ++HG++S  +K+ VM  F N    +L++TTV
Sbjct: 484 ESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTV 543

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR ++ S C+L+  P  ++    R+++
Sbjct: 544 VEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTI 602

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 603 MTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQ 660


>gi|116074689|ref|ZP_01471950.1| putative DNA helicase [Synechococcus sp. RS9916]
 gi|116067911|gb|EAU73664.1| putative DNA helicase [Synechococcus sp. RS9916]
          Length = 844

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 235/713 (32%), Positives = 377/713 (52%), Gaps = 37/713 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L APLS  +G+G K +  L+ +      +         Y+P  ++D     +I  +    
Sbjct: 145 LDAPLSRVKGIGPKLAERLASLGLLLVRDLLL------YYPRDYVDYSAMRRIEALEPGT 198

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVF 117
             TI   + +   F   +     IL   + D TG + +  F                  +
Sbjct: 199 TATIVATVRRCHGFTSPRNPNLSILELQVQDPTGRLKVTRFLAGKRFSSPAALHTQTRQY 258

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-----NFPLIEAVYSLPTGLSVDLFK 172
             G  + ++G +K     +    P      S            +  VY+L  GL+ D  +
Sbjct: 259 PVGATVAISGLVKSGPYGLSFQDPLIEVLESASAPVRSPQIGRLLPVYALTEGLAADRLR 318

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           K++   L      PE +  D        S   A + IH P+     +     R RL +DE
Sbjct: 319 KLVALVLPAAQHWPEPLSADRRDALELMSRPLALDQIHRPKNRDALQRA---RRRLVFDE 375

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKI---AQKILRNIPFSPTKSQESAIKDILQDMS 289
            L  Q+ L+  R   ++     +   G+      + L  +PF  T +Q+  + +I  D++
Sbjct: 376 FLLLQLGLMQRRAAHRQRQAPCLEGVGQRDGLVGRFLSLLPFDLTAAQQRVLAEIEVDLA 435

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           +   M R++QGDVGSGKT+VA+ A+  AV+AG Q  +MAP  +LA+QHY  + ++     
Sbjct: 436 KAEPMARLVQGDVGSGKTVVAVAALLNAVDAGWQGALMAPTEVLAEQHYRSLCQWLTPLH 495

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           I VE++TG+  + +RR+ L  +A+G   I++GTHAL +D + + +L LV+VDEQHRFGV+
Sbjct: 496 ISVELLTGSTSRPNRRRMLTDLANGTLRILVGTHALIEDPVDFSRLGLVVVDEQHRFGVR 555

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI+T  I  +  D
Sbjct: 556 QRNRLLSKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIQTRQISGSDRD 615

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSD 527
           +  + ++  +  G++AY + P +EE ++ + RS V+    L E      S+ ++HGR++ 
Sbjct: 616 QAYDLIREQVQAGQRAYVVLPLVEESEKMDLRSAVDVHRQLVEEVFPDCSVGLLHGRLNS 675

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K++V+ +F  G C++L++TTV+EVG+DV +AS+++I++A+ FGLAQLHQLRGRVGRG 
Sbjct: 676 AEKQAVIQAFARGDCQVLVSTTVVEVGVDVPEASVMVIDHADRFGLAQLHQLRGRVGRGA 735

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C LL +   +  +  RL VL  + DGF IAE DL+ R  G++LG +QSG+P   +A
Sbjct: 736 AASHC-LLVNDSRNPLARQRLDVLVRSTDGFEIAEMDLRLRGPGQVLGTRQSGLPDLALA 794

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
                 ++L+ AR++A  ++ +DP L       +R LL     N+  +   AG
Sbjct: 795 SLADDGAVLDDAREEASRLIQEDPGLNGYP--VLRQLLE----NQLLRMTSAG 841


>gi|293366808|ref|ZP_06613484.1| DNA helicase RecG [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319109|gb|EFE59479.1| DNA helicase RecG [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329736575|gb|EGG72841.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis VCU045]
          Length = 682

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 218/659 (33%), Positives = 358/659 (54%), Gaps = 18/659 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VT+
Sbjct: 13  LDKIKGIGPKRLALLEEL------NIKSVEDLVLYLPTRYEDNTVI-DLNQADDQATVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +    +     R   K+ ++     I +   +     LK        +T+ GK  + 
Sbjct: 66  QGEVYSSPTVAFFGRNKSKLTVHLMINHIAVKCVFFNQPYLKKKLELNSIVTIKGKWNRN 125

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192
           K  I        F + ++     +E +Y +  G+     +  I +ALS +  + EW+  D
Sbjct: 126 KQEINGNR--IFFKDQKNQEDTHLEPIYRIKEGIKQKQLRDNIRQALSDV-TIHEWLTDD 182

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEI 251
           L +K    ++A     +H+P   ++       R   A+ EL   ++ +  L R +   + 
Sbjct: 183 LREKYKLETLAYTIQTLHHPINKQNLLRA---RRTYAFTELFMFELRMQWLNRLEKTSDE 239

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            I IN +    ++ + ++PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT+VA 
Sbjct: 240 AIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAA 299

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           I M A   AG Q+ +M P  ILA+QH E + +   NT   V ++TG++    RR  LE++
Sbjct: 300 ICMYALKTAGYQSALMVPTEILAEQHAESLIQLFGNTM-NVALLTGSVKGKKRRLLLEQL 358

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MTATPI
Sbjct: 359 ENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMTATPI 418

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL ++  G++D+S I + P GRKPIKT      + D+V+ ++   L +G++AY ICP 
Sbjct: 419 PRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICPL 478

Query: 492 IEEKKE-SNFRSVVERFNSLH-EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           IE  +   + ++VV  + SL  ++    + ++HG+MS  DK+ VM  F      +L++TT
Sbjct: 479 IESSEHLEDVQNVVALYESLQSDYGNEKVGLLHGKMSAEDKDQVMQKFSEHEIDILVSTT 538

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R++
Sbjct: 539 VVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERMT 597

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           ++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 598 IMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAELIQ 656


>gi|298694520|gb|ADI97742.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 686

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 215/658 (32%), Positives = 362/658 (55%), Gaps = 18/658 (2%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VTI G 
Sbjct: 16  LKGIGPKKIEVLQQL------NIHTVEDLVLYLPTRYEDNTVI-DLNQAEDQSNVTIEGQ 68

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           + +        R   K+ ++     I +   +     LK      + ITV GK  ++K  
Sbjct: 69  VYRAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQE 128

Query: 136 IIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
           I      +    +Q        +E VY +  G+     +  I +AL+ +  + EW+  +L
Sbjct: 129 ITGNRVFFNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDV-TIHEWLTDEL 187

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIG 252
            +K    ++    N +H+P+  +D       R   A+ EL   ++ +  L R +   +  
Sbjct: 188 REKYKLETLDFTLNTLHHPKSKEDLLRA---RRTYAFTELFLFELRMQWLNRLEKSSDEA 244

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           I I+ +    +  +  +PF  T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I
Sbjct: 245 IEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAI 304

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M A   AG Q+ +M P  ILA+QH E +     ++   V ++TG++    R+  LE++ 
Sbjct: 305 CMYALKTAGYQSALMVPTEILAEQHAESLIALFGDSM-NVALLTGSVKGKKRKILLEQLE 363

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +G    +IGTHAL QD + ++ + LVI DEQHRFGV QR  L +K    +VL MTATPIP
Sbjct: 364 NGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIP 423

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY ICP I
Sbjct: 424 RTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLI 483

Query: 493 EEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E  +   + ++VV  + SL +++  S + ++HG++S  +K+ VM  F N    +L++TTV
Sbjct: 484 ESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTV 543

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR ++ S C+L+  P  ++    R+++
Sbjct: 544 VEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTI 602

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 603 MTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQ 660


>gi|27467820|ref|NP_764457.1| ATP-dependent DNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|251810657|ref|ZP_04825130.1| DNA helicase RecG [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876341|ref|ZP_06285208.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis SK135]
 gi|38605283|sp|Q8CSV3|RECG_STAES RecName: Full=ATP-dependent DNA helicase recG
 gi|27315364|gb|AAO04499.1|AE016746_289 ATP-dependent DNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|251805817|gb|EES58474.1| DNA helicase RecG [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295366|gb|EFA87893.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis SK135]
 gi|329736224|gb|EGG72496.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis VCU028]
          Length = 682

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 218/659 (33%), Positives = 358/659 (54%), Gaps = 18/659 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VT+
Sbjct: 13  LDKIKGIGPKRLALLEEL------NIKSVEDLVLYLPTRYEDNTVI-DLNQADDQATVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +    +     R   K+ ++     I +   +     LK        +T+ GK  + 
Sbjct: 66  QGEVYSSPTVAFFGRNKSKLTVHLMINHIAVKCVFFNQPYLKKKLELNSIVTIKGKWNRN 125

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192
           K  I        F + ++     +E +Y +  G+     +  I +ALS +  + EW+  D
Sbjct: 126 KQEINGNR--IFFKDQKNQEDTHLEPIYRIKEGIKQKQLRDNIRQALSDV-TIHEWLTDD 182

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEI 251
           L +K    ++A     +H+P   ++       R   A+ EL   ++ +  L R +   + 
Sbjct: 183 LREKYKLETLAYTIQTLHHPINKQNLLRA---RRTYAFTELFMFELRMQWLNRLEKTSDE 239

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            I IN +    ++ + ++PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT+VA 
Sbjct: 240 AIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAA 299

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           I M A   AG Q+ +M P  ILA+QH E + +   NT   V ++TG++    RR  LE++
Sbjct: 300 ICMYALKTAGYQSALMVPTEILAEQHAESLIQLFGNTM-NVALLTGSVKGKKRRLLLEQL 358

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MTATPI
Sbjct: 359 ENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMTATPI 418

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL ++  G++D+S I + P GRKPIKT      + D+V+ ++   L +G++AY ICP 
Sbjct: 419 PRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICPL 478

Query: 492 IEEKKE-SNFRSVVERFNSLH-EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           IE  +   + ++VV  + SL  ++    + ++HG+MS  DK+ VM  F      +L++TT
Sbjct: 479 IESSEHLEDVQNVVALYESLQSDYGNEKVGLLHGKMSAEDKDQVMQKFSKHEIDILVSTT 538

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R++
Sbjct: 539 VVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERMT 597

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           ++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 598 IMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAELIQ 656


>gi|323442318|gb|EGA99948.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus O46]
          Length = 686

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 215/658 (32%), Positives = 361/658 (54%), Gaps = 18/658 (2%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VTI G 
Sbjct: 16  LKGIGPKKIEVLQQL------NIHTVEDLVLYLPTRYEDNTVI-DLNQAEDQSNVTIEGQ 68

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           +          R   K+ ++     I +   +     LK      + ITV GK  ++K  
Sbjct: 69  VYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQE 128

Query: 136 IIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
           I      +    +Q        +E VY +  G+     +  I +AL+ +  + EW+  +L
Sbjct: 129 ITGNRVFFNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDV-TIHEWLTDEL 187

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIG 252
            +K    ++    N +H+P+  +D       R   A+ EL   ++ +  L R +   +  
Sbjct: 188 REKYKLETLDFTLNTLHHPKSKEDLLRA---RRTYAFTELFLFELRMQWLNRLEKSSDEA 244

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           I I+ +    +  +  +PF  T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I
Sbjct: 245 IEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAI 304

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M A   AG Q+ +M P  ILA+QH E +     ++   V ++TG++    R+  LE++ 
Sbjct: 305 CMYALKTAGYQSALMVPTEILAEQHAESLIALFGDSM-NVALLTGSVKGKKRKILLEQLE 363

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +G    +IGTHAL QD + ++ + LVI DEQHRFGV QR  L +K    +VL MTATPIP
Sbjct: 364 NGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIP 423

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY ICP I
Sbjct: 424 RTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLI 483

Query: 493 EEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E  +   + ++VV  + SL +++  S + ++HG++S  +K+ VM  F N    +L++TTV
Sbjct: 484 ESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTV 543

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR ++ S C+L+  P  ++    R+++
Sbjct: 544 VEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTI 602

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 603 MTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQ 660


>gi|323141066|ref|ZP_08075971.1| ATP-dependent DNA helicase RecG [Phascolarctobacterium sp. YIT
           12067]
 gi|322414442|gb|EFY05256.1| ATP-dependent DNA helicase RecG [Phascolarctobacterium sp. YIT
           12067]
          Length = 686

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 244/695 (35%), Positives = 372/695 (53%), Gaps = 26/695 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPS--SFIDRHYRPKISEISEERI 69
           P++T +GVG K +  L+ +      N     DLL ++P   +++D      I E+  +  
Sbjct: 6   PVTTLKGVGVKKAAELAAL------NIFSVGDLLEFYPRQGAYLDYAKLKTIKELDVDNS 59

Query: 70  VTI-TGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             I    + Q  +     RR Y  + + D TG  TL +F+               + +TG
Sbjct: 60  KQIFKATVYQVKNGYGASRRSYTSVTVRDETGYATL-YFFGGQRYKAQKLKPDTVLQITG 118

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLP 186
           ++++ +    +           +   P I  VY+L   L+    +  I EAL      LP
Sbjct: 119 RVRQGRTTKSVSEVDVQPLEQDEGKTPGIVPVYALSGNLTQKNLRTWISEALRLAAEDLP 178

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +   ++ + + P    A   IH P     +E    A++R  ++EL   Q  LL  R+Q
Sbjct: 179 ESLPAKVVSQCNLPDRYTALKNIHFPES---WEALRRAKQRFVFEELFLLQCGLLYYRQQ 235

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
                  I    +G + + +++ +PF  T +Q+ A ++I  DM  K  M RILQGDVGSG
Sbjct: 236 SHDNREGIKHAADGALVKDVMQGLPFELTAAQQQAWREISLDMQDKKPMHRILQGDVGSG 295

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+++ +A+A AVE G Q  IM P  ILA QH+E +++Y Q   + + ++TG M    RR
Sbjct: 296 KTVISALALAKAVENGYQGCIMVPTEILAAQHFETLEQYLQPYGVRIALLTGGMRAKARR 355

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAPHVL 424
           + L  +  G   +++GTHAL ++ +++  L L + DEQHRFGV+QR +L+ + A AP VL
Sbjct: 356 ELLLNLELGLVDVVVGTHALLEEDVRFANLSLTVTDEQHRFGVEQRARLSNKSANAPDVL 415

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL LT  GD+DIS +  +P  RKP++T+     R  EV   L   +  G++
Sbjct: 416 VMTATPIPRTLALTVYGDLDISVMKGRPPQRKPVRTLCYTDERRREVYAGLVRQVQAGRQ 475

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTC 542
           AY +CP IEE       S    +  L   F   I  A++HGR+   +K+++M SF  G  
Sbjct: 476 AYVVCPLIEESDVLAVHSAQRVYEELKRDFLQDIPCALLHGRLKGAEKDAIMSSFAAGEL 535

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K+L++TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG E S C+LL     S 
Sbjct: 536 KVLVSTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGSEQSYCVLLTAAD-SP 594

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL+VL  +EDGF +AE+D++QR  G++ G+KQ G+P   IA       ++   R+ 
Sbjct: 595 EALARLNVLHESEDGFYLAEKDMEQRGAGQLFGLKQHGLPDLRIADIMRDVDVIAQVRQL 654

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
           A+  L    D   +R       L   Q+ E F  I
Sbjct: 655 AQAQLRTPEDWAEIR------RLVEMQFGERFNMI 683


>gi|327402490|ref|YP_004343328.1| ATP-dependent DNA helicase RecG [Fluviicola taffensis DSM 16823]
 gi|327317998|gb|AEA42490.1| ATP-dependent DNA helicase RecG [Fluviicola taffensis DSM 16823]
          Length = 699

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 237/690 (34%), Positives = 371/690 (53%), Gaps = 24/690 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE-E 67
           L   +   +GVG + +  L             + DLL++ P  +IDR     I +I   +
Sbjct: 5   LQTHIEFLKGVGPQRAKVLR-----DEIGIATYYDLLYHFPFRYIDRSKFHAIKDIPFID 59

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V + G I   S     +++   +   DGTG I L++F     +L N         V G
Sbjct: 60  GYVQLKGEIISVSETGTGRQKRLNVKFQDGTGIIDLVWFQGYKYILPN-LKLNTTYIVFG 118

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALSRL 182
           K K   N   + HP        + +    + VYS        GL     +K+I   L   
Sbjct: 119 KAKPYVNTWNISHPELNPATGSEDDLG-WQPVYSSTEKLNAFGLHSKGIQKLIEHLLDLA 177

Query: 183 PV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
                 E I    +Q+    +   A   IH P    D      AR R  ++ELL  QI L
Sbjct: 178 SKVYFEETIPVKFIQELKLSTFPVAIRAIHMP---ADVTLAQKARTRFKFEELLNLQIEL 234

Query: 241 LLMRK-QFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           LL +    +K  G  ++  G+I      N +PF  T +Q+  +K+I +D+    +M R+L
Sbjct: 235 LLRKSINMQKSSGQVVSDVGQIFHDFYENNLPFPLTNAQKKVLKEIRRDIGSGFQMNRLL 294

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VAL+ +   + +  Q  +MAP  ILA QHY  +++  + T + +EI+TG+
Sbjct: 295 QGDVGSGKTVVALLTILMGIGSDLQGALMAPTEILANQHYVGLQELLEGTSVTIEILTGS 354

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
             +A RR+  E++ +G+ +I+IGTHAL +D +Q+  L +V++DEQHRFGV+QR +L +K 
Sbjct: 355 TKKAKRREIHEKLLNGEINILIGTHALLEDIVQFKNLGIVVIDEQHRFGVEQRSRLWKKN 414

Query: 419 T-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
           T  PH+L+MTATPIPRTL +T  GD+D+S I E P GRKPI T          V   ++ 
Sbjct: 415 TSPPHILVMTATPIPRTLAMTYYGDLDVSVIDELPPGRKPITTKHHFEKDRSLVFGFIRK 474

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVM 534
            ++ G++ Y + P I+E +  ++ ++++ + ++   F      ++I+HG+M    K+  M
Sbjct: 475 EIALGRQIYIVYPLIQESETLDYNNLMDGYEAISRAFPLPDYRVSIVHGKMKPEVKDYEM 534

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G  ++++ATTVIEVG++V +AS+++IE++E FGL+QLHQLRGRVGRG E S C+L
Sbjct: 535 QQFVEGKTQIMVATTVIEVGVNVPNASVMVIESSERFGLSQLHQLRGRVGRGAEQSYCLL 594

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +    LS ++  R+  +  T DGF I+E DL+ R  G+I+G +QSG     IA       
Sbjct: 595 MTGSKLSADTKKRIHTMVRTNDGFEISEVDLELRGPGDIMGTQQSGTLDLKIADLAKDGP 654

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           L+ +AR+ A+ +LT+DP L       +R+ 
Sbjct: 655 LVALAREKARELLTEDPRLDKPEHSFLRLE 684


>gi|258423932|ref|ZP_05686817.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9635]
 gi|257845961|gb|EEV69990.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus A9635]
          Length = 686

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 216/658 (32%), Positives = 361/658 (54%), Gaps = 18/658 (2%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VTI G 
Sbjct: 16  LKGIGPKKIEVLQQL------NIHTVEDLVLYLPTRYEDNTVI-DLNQAEDQSNVTIEGQ 68

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           +          R   K+ ++     I +   +     LK      + ITV GK  ++K  
Sbjct: 69  VYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQE 128

Query: 136 IIMVHPHYIFHNSQDVNFPLI--EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
           I      +    +Q      I  E VY +  G+     +  I +AL+ +  + EW+  +L
Sbjct: 129 ITGNRVFFNSQGTQTQENADIQLEPVYRIKEGIKQKQIRDQIRQALNDV-TIHEWLTDEL 187

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIG 252
            +K    ++    N +H+P+  +D       R   A+ EL   ++ +  L R +   +  
Sbjct: 188 REKYKLETLDFTLNTLHHPKSKEDLLRA---RRTYAFTELFLFELRMQWLNRLEKSSDEA 244

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           I I+ +    +  +  +PF  T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I
Sbjct: 245 IEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAI 304

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M A   AG Q+ +M P  ILA+QH E +     ++   V ++TG++    R+  LE++ 
Sbjct: 305 CMYALKTAGYQSALMVPTEILAEQHAESLIALFGDSM-NVALLTGSVKGKKRKILLEQLE 363

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +G    +IGTHAL QD + ++ + LVI DEQHRFGV QR  L +K    +VL MTATPIP
Sbjct: 364 NGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIP 423

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY ICP I
Sbjct: 424 RTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLI 483

Query: 493 EEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E  +   + ++VV  + SL +++  S + ++HG++S  +K+ VM  F N    +L++TTV
Sbjct: 484 ESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTV 543

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR ++ S C+L+  P  ++    R+++
Sbjct: 544 VEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTI 602

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 603 MTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQ 660


>gi|300690475|ref|YP_003751470.1| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07]
 gi|299077535|emb|CBJ50161.2| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07]
          Length = 729

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 249/724 (34%), Positives = 376/724 (51%), Gaps = 60/724 (8%)

Query: 19  VGKKY-----------------SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           VG K                  +  L+K+         R +DL+ + P  + D      I
Sbjct: 23  VGPKRAPAAKPADKPAAKTARPADKLAKL------GLRRDVDLVLHLPMRYEDETTLLTI 76

Query: 62  SEISE----ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVF 117
           +E            + G +++ +   L+ RR   + + D +GE+ L F       +K + 
Sbjct: 77  AEAVARANTGWAAQVEGGVTR-NEVALRPRRQLVVHIADDSGELVLRFLNFYGSQVKQM- 134

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
            EG ++ V G+++       MVHP        +     +  VY    G++    +K I+ 
Sbjct: 135 AEGVRLRVRGEVRGGFFGAEMVHPTVRAVAPDEPLPDRLTPVYPSTAGVAQAYLRKAILN 194

Query: 178 ALSRLPVLPEWIEKDL----LQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLA 229
           AL R P LPE +  +L    L      + AEA  ++H P    D     E T PA  R+ 
Sbjct: 195 ALGRTP-LPETLPDNLMRGPLAPLKLMAPAEAVRLLHQPTPDVDEHSLIERTHPAWLRIK 253

Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQESAIKDILQD 287
           +DELLA Q++L   +   +      +   G      + +  +PF  T +Q    ++I  D
Sbjct: 254 FDELLAQQLSLKRAQAARRTRSAPVLRTGGADGLLARFMAALPFKLTGAQARVWEEIRAD 313

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           +++   M R+LQGDVGSGKT++A +A   A++AG QA +MAP  +LA+QHY  +  + + 
Sbjct: 314 LARPYPMQRLLQGDVGSGKTVIAALAACQAIDAGWQAALMAPTELLAEQHYRKLSAWLEP 373

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + +  + G++ +  + +A  R+A G A ++IGTHAL QD++ + +L L +VDEQHRFG
Sbjct: 374 LGVEIVWLAGSLKRKQKDEAAARVAAGAAQLVIGTHALIQDTVAFARLGLAVVDEQHRFG 433

Query: 408 VQQRLKLT-----------QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           V QRL L            + A  PH L+M+ATPIPRTL +T   D+D+S I E P GR 
Sbjct: 434 VAQRLALRGKAGGADTPIAETAQVPHQLMMSATPIPRTLAMTYYADLDVSAIDELPPGRT 493

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           P+ T ++   R DEVIER+     EG++ YW+CP IEE +    ++ VE F +L +    
Sbjct: 494 PVVTRLVNDARRDEVIERIHAAAREGRQVYWVCPLIEESEALQLQTAVETFETLSQSLAG 553

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HGR+  +DK +VM +F  G   +L+ATTVIEVG+DV +AS+++IE+AE FGLAQ
Sbjct: 554 LKVGLVHGRLPSVDKAAVMSAFAGGELHVLVATTVIEVGVDVPNASLMVIEHAERFGLAQ 613

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG   S CILLY  PLS  +  RL  ++ T DGF IA  DL  R  GE LG
Sbjct: 614 LHQLRGRVGRGTAESVCILLYQAPLSPTAKQRLQTMRETTDGFEIARRDLDIRGPGEFLG 673

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
            +QSG      A       ++E A+  A+ +L + P+  +V     R L       E   
Sbjct: 674 ARQSGEAMLRFADLNHDAWMVEFAQGAAEQMLARFPE--AVEAHLKRWL------GEREH 725

Query: 696 FIRA 699
           ++R 
Sbjct: 726 YLRV 729


>gi|221142017|ref|ZP_03566510.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|302751050|gb|ADL65227.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus str. JKD6008]
          Length = 686

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 215/658 (32%), Positives = 361/658 (54%), Gaps = 18/658 (2%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VTI G 
Sbjct: 16  LKGIGPKKIEVLQQL------NIHTVEDLVLYLPTRYEDNTVI-DLNQAEDQSNVTIEGQ 68

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           +          R   K+ ++     I +   +     LK      + ITV GK  ++K  
Sbjct: 69  VYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQE 128

Query: 136 IIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
           I      +    +Q        +E VY +  G+     +  I +AL+ +  + EW+  +L
Sbjct: 129 ITGNRVFFNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDV-TIHEWLTDEL 187

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIG 252
            +K    ++    N +H+P+  +D       R   A+ EL   ++ +  L R +   +  
Sbjct: 188 REKYKLETLDFTLNTLHHPKSKEDLLRA---RRTYAFTELFLFELRMQWLNRLEKSSDEA 244

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           I I+ +    +  +  +PF  T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I
Sbjct: 245 IEIDYDIDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAI 304

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M A   AG Q+ +M P  ILA+QH E +     ++   V ++TG++    R+  LE++ 
Sbjct: 305 CMYALKTAGYQSALMVPTEILAEQHAESLMALFGDSM-NVALLTGSVKGKKRKILLEQLE 363

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +G    +IGTHAL QD + ++ + LVI DEQHRFGV QR  L +K    +VL MTATPIP
Sbjct: 364 NGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIP 423

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY ICP I
Sbjct: 424 RTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLI 483

Query: 493 EEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E  +   + ++VV  + SL +++  S + ++HG++S  +K+ VM  F N    +L++TTV
Sbjct: 484 ESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEINVLVSTTV 543

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR ++ S C+L+  P  ++    R+++
Sbjct: 544 VEVGVNVPNATFMMIYDADRFGLSILHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTI 602

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 603 MTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQ 660


>gi|82750831|ref|YP_416572.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus RF122]
 gi|82656362|emb|CAI80780.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
          Length = 686

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 215/658 (32%), Positives = 361/658 (54%), Gaps = 18/658 (2%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VTI G 
Sbjct: 16  LKGIGPKKIEVLQQL------NIHTVEDLVLYLPTRYEDNTVI-DLNQAEDQSNVTIEGQ 68

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           +          R   K+ ++     I +   +     LK      + ITV GK  ++K  
Sbjct: 69  VYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRIKQE 128

Query: 136 IIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
           I      +    +Q        +E VY +  G+     +  I +AL+ +  + EW+  +L
Sbjct: 129 ITGNRVFFNSQGTQTQESADVQLEPVYRIKEGIKQKQIRDQIRQALNDV-TIHEWLTDEL 187

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIG 252
            +K    ++    N +H+P+  +D       R   A+ EL   ++ +  L R +   +  
Sbjct: 188 REKYKLETLDFTLNTLHHPKSKEDLLRA---RRTYAFTELFLFELRMQWLNRLEKSSDEA 244

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           I I+ +    +  +  +PF  T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I
Sbjct: 245 IEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAI 304

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M A   AG Q+ +M P  ILA+QH E +     ++   V ++TG++    R+  LE++ 
Sbjct: 305 CMYALKTAGYQSALMVPTEILAEQHAESLIALFGDSM-NVALLTGSVKGKKRKILLEQLE 363

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +G    +IGTHAL QD + ++ + LVI DEQHRFGV QR  L +K    +VL MTATPIP
Sbjct: 364 NGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIP 423

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY ICP I
Sbjct: 424 RTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLI 483

Query: 493 EEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E  +   + ++VV  + SL +++  S + ++HG++S  +K+ VM  F N    +L++TTV
Sbjct: 484 ESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTV 543

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR ++ S C+L+  P  ++    R+++
Sbjct: 544 VEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTI 602

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 603 MTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQ 660


>gi|313124079|ref|YP_004034338.1| ATP-dependent DNA helicase recg [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280642|gb|ADQ61361.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 679

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 226/676 (33%), Positives = 362/676 (53%), Gaps = 26/676 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            +F P++  +GVG K +  L  +            DLLFY P  + +      + ++ + 
Sbjct: 6   AIFRPVTALKGVGAKTAEALQSL------GIYSIYDLLFYFPYRYDELENL-PLDQLEDG 58

Query: 68  RIVTITGYISQHSS---FQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           + V + G ++ +     F   K R  +K+ ++     I + FF +    L      G++I
Sbjct: 59  QKVMLKGIVATNPYQNYFGYHKSRVSFKLRIDHD--IIMVNFFNQ--PWLTKQLSVGQEI 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182
            V GK    K  +      Y    +++ +   +  +YS+   +     + +I  A++  +
Sbjct: 115 AVYGKYDLRKQSLSA----YKLLANKNSDDG-MAPIYSVNRQIKQKKLQTMIDLAIAESM 169

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             +   + +DL +     +  +    +H+P   KD      AR    + E    Q+ L L
Sbjct: 170 DEIGNAVPEDLRKHYRLMADQDLVIAMHHP---KDLTEAKEARRSAVFREFFLFQMQLAL 226

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M  Q K   G   + + +   K+ +++PF+ +  Q+  I +I  DM    +M R+LQGDV
Sbjct: 227 MSSQNKSHSGYAKHYDLEEIGKLTKSLPFALSPDQKKVINEIFADMFVDQQMQRLLQGDV 286

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA+ A+  AV AG QA +M P  ILA QHY  I    ++  + V ++TG+    
Sbjct: 287 GSGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTKTM 346

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            RR+  + +A G  +++IGTHAL Q+ + + KL LVI+DEQHRFGV QRL L  K   P 
Sbjct: 347 ERREIYKELADGSINVVIGTHALIQEQVAFKKLGLVIIDEQHRFGVVQRLALINKGDRPD 406

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L MTATPIPR+L LT  GD  +S+I   PAGRKPIK+     +++DEV   ++  L+EG
Sbjct: 407 ILAMTATPIPRSLALTVYGDTALSEIRHLPAGRKPIKSYWKTSSQLDEVYSLMRQQLAEG 466

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGT 541
            + Y + P I E +  +  +     + L   F    + ++HG+M   DKE +MD F  G 
Sbjct: 467 FQIYAVTPLISESETIDLENAEALHDRLAGEFPDQEVVLLHGKMGAADKEQIMDRFAAGE 526

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ T+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG+  S C+ L  P  +
Sbjct: 527 VDILVTTSVIEVGVDVANANLMVIFDADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-T 585

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F          ++ +AR 
Sbjct: 586 EAGKQRMKIVAETNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRTGSVVSDYQVMVVARD 645

Query: 662 DAKHILTQDPDLTSVR 677
           +AK I+  DPDL + +
Sbjct: 646 EAKRIVQADPDLKAEK 661


>gi|118444201|ref|YP_878305.1| ATP-dependent DNA helicase RecG [Clostridium novyi NT]
 gi|118134657|gb|ABK61701.1| ATP-dependent DNA helicase RecG [Clostridium novyi NT]
          Length = 673

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 236/662 (35%), Positives = 366/662 (55%), Gaps = 24/662 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
           +  + + +G+G K    L++       N    +DLL Y P  +   +Y   IS+I+ E  
Sbjct: 4   YDDIVSLKGIGPKTKELLNQ------CNIYNILDLLLYFPRDYEKTYYCDDISKITNEDK 57

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLL--FFYRKTEMLKNVFFEGRKITVTG 127
           V I   +         KR      +      +T    +F +K   +KN F   ++  + G
Sbjct: 58  VLIKAKVKSIKKDAYVKRNMVISTVEFIKDNVTFKGKWFNQK--YIKNKFMVNKEYFIFG 115

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           K++  +N I   +P  +      +N   +   YSL   L+   F+K I   L  + ++ E
Sbjct: 116 KVQLERNNITFTNPTIVEDPESFLN---VIPKYSLKGSLTNKFFEKTIKHVLDNIEIV-E 171

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +   +L K +  S+ EA   IH P   K  E     + RL + EL    + LL+++ Q+
Sbjct: 172 NLPSQILNKYNLISLDEAIRNIHKPTGFKSLEEA---QNRLKFQELFTYSLKLLMLK-QY 227

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           KK  G+   +  +  + +  +IP + T SQ   I++IL D  +   M R++QGDVGSGKT
Sbjct: 228 KKSEGVAFKISDE-LKILKDSIPVTLTNSQNKVIREILIDEKRDVPMNRLVQGDVGSGKT 286

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VALI++   ++ G Q  +MAP  ILA QHY    +  ++  I +E++TG     H+ + 
Sbjct: 287 IVALISIFNVIKNGYQGCLMAPTEILANQHYTQAIELFKDFNISIELLTG--STKHKDEV 344

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             R+ +G   +IIGTHAL +D +++ KL +V+ DEQHRFGV+QR KL  K     +L+MT
Sbjct: 345 KNRLKNGSIDLIIGTHALLEDDVEFSKLGIVVTDEQHRFGVKQRSKLYNKNNNIDILVMT 404

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL L+  GD+D+S I E P GRK I T  +       V       +  G + Y 
Sbjct: 405 ATPIPRTLALSIYGDLDVSSIDELPPGRKKIDTYAVNDKFRKRVYNFALKEIHSGAQVYI 464

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP +EE ++ N +SV + +  L E++     I I+HG+M   +K+ +M+ FKNG  K+L
Sbjct: 465 VCPLVEENEDLNIKSVEKLYLELKENYFKDTEIEILHGKMPSKEKDHIMNKFKNGHIKVL 524

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           I+TTVIEVG++V +A+++IIENAE FGL+QLHQLRGRVGRG++ S CIL+ +   S+ + 
Sbjct: 525 ISTTVIEVGVNVPNATLMIIENAERFGLSQLHQLRGRVGRGDKKSYCILITNSN-SEITK 583

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R++V+  + DGF IAEEDLK R  GEI G  Q G   F+I+       +L+ A K+A+ 
Sbjct: 584 KRMNVITKSNDGFFIAEEDLKLRGSGEIFGFNQHGEDGFIISNIVDDYKILKSANKEARS 643

Query: 666 IL 667
           ++
Sbjct: 644 LI 645


>gi|291542986|emb|CBL16096.1| ATP-dependent DNA helicase RecG [Ruminococcus bromii L2-63]
          Length = 681

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 226/694 (32%), Positives = 369/694 (53%), Gaps = 27/694 (3%)

Query: 6   LNPLF-APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L+  P++   G+G+K +   +++            DL+ ++P ++ D      I E+
Sbjct: 1   MTSLYKTPVTNLNGIGEKRAALFARL------GIKSVGDLINFYPRTYEDWSNIKHIDEL 54

Query: 65  SEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
                V I   ++   +       R   K  + D TG I L+FF  K   + ++  +G +
Sbjct: 55  EYGETVCIKAVVATSVNDTRISGGRIISKTAVYDETGSIQLVFFNNK--YISSMLRQGGE 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
               GKI      + +V P +    +  V    I  +Y    GL     +  + +ALS L
Sbjct: 113 YFFYGKISSDSYGMQIVSPTF----APAVKGTQIRPIYRQTAGLPSKSVESAVRQALSML 168

Query: 183 PV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           P  + + +   + ++    S+ +A   IH P+  +  E     R+RL  +EL+   + + 
Sbjct: 169 PSKIKDPLPDAIRERFDLCSLRQALFDIHFPKNRQQLEAA---RKRLVTEELVVLNLGMR 225

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQG 300
            +R   +    + I  +   +++    +PF+ T +Q+ A+ D + D+ ++ + + R++QG
Sbjct: 226 NLRDHSRGVTSLEITKD--YSKEFESLLPFTMTNAQKRAVSDCINDIINKSSPLNRLVQG 283

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT VA        + G Q   MAP  ILA+QHY+  +K  +NT I V ++TG + 
Sbjct: 284 DVGSGKTAVAASVCYTVAKNGFQTAFMAPTEILARQHYKTFQKLFENTDIKVGLLTGTLR 343

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           ++ +++  + +A G   ++IGTHAL  D  ++  L L + DEQHRFGV QR KL  K   
Sbjct: 344 ESEKKQIRKSLADGSIDMVIGTHALITDKTEFKNLALAVTDEQHRFGVAQRAKLLGKGNN 403

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH+L+M+ATPIPRTL L   GD+DIS I E P  RKP+KTV+        V + ++  + 
Sbjct: 404 PHLLVMSATPIPRTLGLIIFGDLDISIIDELPPSRKPVKTVLRTSAMRGGVYDFIRSEVK 463

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNS--LHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            G++AY +CP +EE +  +  S  E      L E    ++ I+HG+M   +K+ VM  F 
Sbjct: 464 HGRQAYIVCPLVEEGELDDVASAEEYAADLMLREFPDIAVGIVHGQMKSDEKDEVMRKFV 523

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                +L+ATTVIEVG+DV +A++I+IENAE FGL+QLHQLRGRVGRG   S CIL+   
Sbjct: 524 ENEYSVLVATTVIEVGVDVPNATVIVIENAERFGLSQLHQLRGRVGRGSSQSYCILI-SD 582

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             SK +  RL V+ +T +GF+IA+EDLK R  G+  G +Q G+P+  IA        LE+
Sbjct: 583 KGSKTTRERLEVMCSTNNGFVIADEDLKMRGPGDFFGHRQHGLPQMSIADFA-DTKSLEL 641

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLY-LYQYN 691
           ++K A  I+ +  D+ +   + ++  +  L++  
Sbjct: 642 SQKIADCIMDRYGDIRNDEIRLLKAEVDRLFERG 675


>gi|313886107|ref|ZP_07819842.1| putative ATP-dependent DNA helicase RecG [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924453|gb|EFR35227.1| putative ATP-dependent DNA helicase RecG [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 697

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 234/692 (33%), Positives = 374/692 (54%), Gaps = 21/692 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++ L  PL+   G+G K +  +++ ++        + DLL+Y P  + DR     I  + 
Sbjct: 1   MSFLTTPLADLPGLGTKRAQLIAEELDLN-----TYRDLLYYIPYRYADRRVIYPIGSLM 55

Query: 66  EER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
                V I G +   S+  L ++      L D TGE+ L++F +    ++     G K  
Sbjct: 56  PSMSEVQIEGILQPFSAPSLGRKSSLSARLMDDTGELLLVWF-KGLNYIQRSLTPGCKYI 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-----VDLFKKIIVEAL 179
           V GK++   N++ + HP     +  + +    + VY     L           + I + L
Sbjct: 115 VYGKLQLFNNQLQITHPEIKPADKPNPSVGGYQPVYRTTERLKRARIDSAFLGRYIDQLL 174

Query: 180 SR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
                 +PE + + L+  +    +  A   IH+P+     E    A+ RL YDEL    +
Sbjct: 175 QSPYFSIPETLSEPLIAHRHLAPLQTAIRWIHHPQS---VEQAQVAKFRLKYDELFYLNL 231

Query: 239 ALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            L  +   Q  +  G  ++  GK+   +   +P+  T +Q+  +++I +D +   +M R+
Sbjct: 232 YLRRLAVMQRMRYEGYRLDQVGKLFNSLYHALPYDLTGAQKRVLREIRRDTNSGAQMNRL 291

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL AM  AV+ G QA ++AP  ILAQQHYE I ++ +   + + ++TG
Sbjct: 292 LQGDVGSGKTLVALFAMLLAVDNGYQACMLAPTEILAQQHYETISEFVEGLDVSIALLTG 351

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR--LKLT 415
           +     RR+ L  +A G   I+IGTHA+ ++ + + KL + ++DEQHRFGV QR  L   
Sbjct: 352 SSKTRERRETLSALADGSLSILIGTHAILEERVAFRKLGMAVIDEQHRFGVAQRSKLWGK 411

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
              T PH+L+M+ATPIPRTL +T  GD+++S I E P GRKPI TV I   + + +   +
Sbjct: 412 NVLTLPHILVMSATPIPRTLAMTMYGDLEVSVIDEMPPGRKPITTVQIAEKKKETLYSLI 471

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
              ++ G++ Y + P IE  +ES+F ++   +    E F    +  +HGR+S  DK   M
Sbjct: 472 NETINRGQQIYVVFPMIEGTEESDFANLEVGYKEYVERFGEKRVVYVHGRLSAEDKAEQM 531

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F +G   +L+ATTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL
Sbjct: 532 ERFASGEVPILLATTVIEVGVNVPNATVMVINDAQRFGLAQLHQLRGRVGRGGDKSYCIL 591

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHD 653
           +    L  ++  R+  +  T+DGF IAEED++ R  G++ G +QSG +    IA P +  
Sbjct: 592 VTPDDLQGDAKQRIDTMVATQDGFKIAEEDMRLRGFGQMEGTRQSGTLAGIRIADPVVDY 651

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +LL + R D  ++L   P L     +  RI L
Sbjct: 652 NLLALTRLDVNYLLDYSPLLDKPDTELYRINL 683


>gi|323441002|gb|EGA98709.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus O11]
          Length = 686

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 216/658 (32%), Positives = 361/658 (54%), Gaps = 18/658 (2%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VTI G 
Sbjct: 16  LKGIGPKKIEVLQQL------NIHTVEDLVLYLPTRYEDNTVI-DLNQAEDQSNVTIEGQ 68

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           +          R   K+ ++     I +   +     LK      + ITV GK  ++K  
Sbjct: 69  VYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQE 128

Query: 136 IIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
           I      +    +Q        +E VY +  G+     +  I +AL+ +  + EW+  +L
Sbjct: 129 ITGNRVFFNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDV-TIHEWLTDEL 187

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIG 252
            +K    ++    N +H+P+  +D       R   A+ EL   ++ +  L R +   +  
Sbjct: 188 REKYKLETLDFTLNTLHHPKSKEDLLRA---RRTYAFTELFLFELRMQWLNRLEKSSDEA 244

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           I I+ +    +  +  +PF  T++Q+S++ DI +D+    RM R+LQGDVGSGKT+VA I
Sbjct: 245 IEIDYDLDQVKSFIDRLPFELTEAQKSSVNDIFRDLKAPIRMHRLLQGDVGSGKTVVAAI 304

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M A   AG Q+ +M P  ILA+QH E +     ++   V ++TG++    R+  LE++ 
Sbjct: 305 CMYALKTAGYQSALMVPTEILAEQHAESLIALFGDSM-NVALLTGSVKGKKRKILLEQLE 363

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +G    +IGTHAL QD + ++ + LVI DEQHRFGV QR  L +K    +VL MTATPIP
Sbjct: 364 NGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIP 423

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY ICP I
Sbjct: 424 RTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLI 483

Query: 493 EEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E  +   + ++VV  + SL +++  S + ++HG++S  +K+ VM  F N    +L++TTV
Sbjct: 484 ESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTV 543

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR ++ S C+L+  P  ++    R+++
Sbjct: 544 VEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTI 602

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 603 MTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQ 660


>gi|329113369|ref|ZP_08242150.1| ATP-dependent DNA helicase RecG [Acetobacter pomorum DM001]
 gi|326697194|gb|EGE48854.1| ATP-dependent DNA helicase RecG [Acetobacter pomorum DM001]
          Length = 665

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 252/670 (37%), Positives = 394/670 (58%), Gaps = 17/670 (2%)

Query: 42  IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           IDLLF  P S  DR  RP ++++  + I T+TG +    S   + R+P++++++D T  +
Sbjct: 2   IDLLFCLPESITDRRLRPTLAQLRPDTIATVTGVVQDIRSPAPRTRQPWRVMIDDATSVL 61

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            + FF   +        +G  I ++GK+++  +++ +  P Y+   +Q    PL++ V+ 
Sbjct: 62  EVAFF---SPWQAKQVVKGESIALSGKVERFGDKLTITSPDYLVPANQIERIPLLDPVWP 118

Query: 162 LPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
           L  GL     +  +  AL  LP  LPEW +K L+++K++P  A A + +H P    D   
Sbjct: 119 LTAGLFTGQVRMAMAAALRLLPPTLPEWHDKALIKQKNWPDFATALSWVHFPDTIPDSAQ 178

Query: 221 TSPA-------RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                      + RLA DELLA Q+A+ + ++  +   G  +N +G + ++ L +     
Sbjct: 179 GDAWHGSRTRAQARLACDELLADQLAMRIAQQASRARPGRSLNGDGTLQKQALASFGHEL 238

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q+  +++I  DM+  + M R+LQGDVG+GKTLVAL+AM  AVEAG QA +MAP  IL
Sbjct: 239 TYGQKHVLREIETDMATPHCMSRLLQGDVGAGKTLVALMAMLRAVEAGTQAALMAPTEIL 298

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH    ++    + + V  ++ ++    R++ L+ IA G A +++GTHAL QD +++ 
Sbjct: 299 ARQHAATFRRL---SPVPVAFLSSSVKGKARKQTLQDIADGTAKLVVGTHALVQDGVKFA 355

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L ++DEQHRFGV QRL L +K     +L+MTATPIPRTL+LT  G++ IS++  KPA
Sbjct: 356 DLGLAVIDEQHRFGVDQRLALVEKGHETDMLVMTATPIPRTLLLTRFGEMQISRLEGKPA 415

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GRKP+ T +  +   ++V+  +   L +G + +W+CP + E +  +  +   R  +L E 
Sbjct: 416 GRKPVHTSLHSLGNFEDVLAGIGRALDKGAQIFWVCPLVSESEAMDLAAAEARHAALVER 475

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           F   I + HG+     +E V+ +F NG  ++L+ATTVIEVG+DV  A+I++IE+AE FGL
Sbjct: 476 FGDKIGLAHGQQDANVREEVLQAFSNGETRMLVATTVIEVGVDVPSATIMVIEHAERFGL 535

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           AQLHQLRGRVGRG + S C++L+   L   +  RLS LK TEDGFLIA+ED + R  GE 
Sbjct: 536 AQLHQLRGRVGRGADASFCLMLHDEGLGLTARRRLSCLKETEDGFLIADEDFRLRGGGEA 595

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ---SIRILLYLYQY 690
            G +QSG+P + +A   L D LL+ A  +A  IL   P  ++       + RILL L+  
Sbjct: 596 TGRRQSGLPDYRMAPEMLVDMLLDTAHDEATEILPDGPPTSTPEKNLRVAARILLALFNK 655

Query: 691 NEAFQFIRAG 700
            +A +    G
Sbjct: 656 TDAARIFSGG 665


>gi|282916476|ref|ZP_06324238.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770288|ref|ZP_06343180.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus H19]
 gi|282319916|gb|EFB50264.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460435|gb|EFC07525.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus H19]
          Length = 686

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 215/658 (32%), Positives = 360/658 (54%), Gaps = 18/658 (2%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VTI G 
Sbjct: 16  LKGIGPKKIEVLQQL------NIHTVEDLVLYLPTRYEDNTVI-DLNQAEDQSNVTIEGQ 68

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           +          R   K+ ++     I +   +     LK      + ITV GK  ++K  
Sbjct: 69  VYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQE 128

Query: 136 IIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
           I      +    +Q        +E VY +  G+     +  I +AL+ +  + EW+  +L
Sbjct: 129 ITGNRVFFNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDV-TIHEWLTDEL 187

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIG 252
            +K    ++    N +H+P+  +D       R   A+ EL   ++ +  L R +   +  
Sbjct: 188 REKYKLETLDFTLNTLHHPKSKEDLLRA---RRTYAFTELFLFELRMQWLNRLEKSSDEA 244

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           I I+ +    +  +  +PF  T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I
Sbjct: 245 IEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAI 304

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M A   AG Q+ +M P  ILA+QH E +     ++   V ++TG++    R+  LE++ 
Sbjct: 305 CMYALKTAGYQSALMVPTEILAEQHAESLIALFGDSM-NVALLTGSVKGKKRKILLEQLE 363

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MTATPIP
Sbjct: 364 NGTIDCLIGTHALIQDDVIFNNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIP 423

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY ICP I
Sbjct: 424 RTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLI 483

Query: 493 EEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E  +   + ++VV  + SL +++  S + ++HG++S  +K+ VM  F N    +L++TTV
Sbjct: 484 ESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTV 543

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR ++ S C+L+  P  ++    R+++
Sbjct: 544 VEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTI 602

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 603 MTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQ 660


>gi|209520459|ref|ZP_03269219.1| ATP-dependent DNA helicase RecG [Burkholderia sp. H160]
 gi|209499104|gb|EDZ99199.1| ATP-dependent DNA helicase RecG [Burkholderia sp. H160]
          Length = 760

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 248/674 (36%), Positives = 369/674 (54%), Gaps = 31/674 (4%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      I  +    I    G +   + 
Sbjct: 76  KTADKLAKL------GLTRDIDLVLHLPMRYEDETSLTPIGHLLPGGIAQAEGVVFD-NE 128

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G ++ V G ++     + MVH
Sbjct: 129 IAYRPRRQLLVKLRDADGDELVLRFLNFYGSQVKQM-APGARLRVRGDVRGGFFGMEMVH 187

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL---PVLPEWIEKDLLQKK 197
           P     +        +  VY    G+S    +K I  AL+R     +LPE + +  L+  
Sbjct: 188 PTVRVVDEDTPLPQALTPVYPSTAGVSQAYLRKAIDNALARTSLPELLPEPVARAFLEPL 247

Query: 198 SFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFK----- 248
             P++ +A   +H+P    D     + T PA  R+ ++ELLA Q++L     + +     
Sbjct: 248 GVPALMDAVRTLHHPGAQSDETALMDGTHPAWVRIKFEELLAQQMSLKRAHDERRARAAP 307

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
                 +  E  +  ++L+ +PFS T +QE    +I  D++Q + M R+LQGDVGSGKT+
Sbjct: 308 TMPRRKLGDESALVARLLKALPFSLTAAQERVGGEIALDLTQPHPMQRLLQGDVGSGKTI 367

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A+
Sbjct: 368 VAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVKVAWLAGSLKTKEKRAAI 427

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--------- 419
           E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV QRL L  KA          
Sbjct: 428 EAAALGTAQLVIGTHAIIQDAVEFARLGLVIVDEQHRFGVAQRLALRAKAQGAAAGAPDF 487

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R +EVI R++   
Sbjct: 488 QPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAA 547

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
             G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F 
Sbjct: 548 LTGRQVYWVCPLIEESETLQLQTAVETYETLVAALPELKVGLVHGRLAPAEKATVMDAFT 607

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  
Sbjct: 608 RNEIQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTG 667

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS  +  RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  +    L+E 
Sbjct: 668 PLSMTARARLQTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLQNDQHLIEP 727

Query: 659 ARKDAKHILTQDPD 672
           AR+ A  +L   PD
Sbjct: 728 AREAAAKLLDHYPD 741


>gi|268319221|ref|YP_003292877.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii FI9785]
 gi|262397596|emb|CAX66610.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii FI9785]
          Length = 679

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 219/684 (32%), Positives = 373/684 (54%), Gaps = 28/684 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF P++  +GVG K +  L+ +            DLLFY P  + D      + +I + +
Sbjct: 8   LFEPVTELKGVGAKTATALASL------GINTIYDLLFYFPFRYDDLETI-PLDQIEDGQ 60

Query: 69  IVTITGYISQ---HSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            V + G +      S F  +K R  +K+ ++     I + FF +    LK+    G+++ 
Sbjct: 61  KVLLKGMVVTDPFVSRFGYRKTRLSFKMKIDHD--IIMVNFFNQ--PWLKDKVESGKEVA 116

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           V GK + ++  +       +    +D  F     +YS+   L  +  +K+I  AL   + 
Sbjct: 117 VYGKYQVVRQALSGFK---LVAEKKDSGFA---PIYSVNRHLKQNKLQKLIDLALEEAIN 170

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-ALLL 242
            + E I   + +K    S       +H+P+   +      AR    + E    Q+    L
Sbjct: 171 EVGETIPVSIREKYCLLSDRVLVEKMHHPKNGNE---AKIARRSAIFREFFLFQMQLAQL 227

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           + ++ +   G+    +    ++++  IPF  +  Q+  + +I  D+  K +M R+LQGDV
Sbjct: 228 LSQRNEDAPGVEKKYDLAAVKELIEEIPFELSDDQKKVVNEIFADLHSKRQMRRLLQGDV 287

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA+ A+ AAV AG QA +M P  ILAQQH+  I +  +   + V ++TG+    
Sbjct: 288 GSGKTVVAVFAIYAAVTAGYQAALMVPTEILAQQHFAKIDELLKPLGVRVALLTGDTKDL 347

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +++    +A G  +++IGTHAL Q  + +  L LVI+DEQHRFGV QR  L +K  AP 
Sbjct: 348 EKKEIYHELADGTINVVIGTHALIQKDVHFKDLGLVIIDEQHRFGVNQRNTLIKKGDAPD 407

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L MTATPIPRTL LT  GD+ +S+I   P GRKP+ +     +++ EV+  ++  L +G
Sbjct: 408 ILAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLREVLGLMRSQLDKG 467

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGT 541
            + Y + P I E ++S+ ++  +    +  +F   ++ ++HG+M    K  +MDSF  G 
Sbjct: 468 FQIYVVTPLISESEKSDLKNAEDLQAKIAHYFKNENVVLLHGQMKGDQKNEIMDSFAAGK 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C+ +  P  +
Sbjct: 528 INILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFCVFVSDPK-T 586

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R++++ +T +GF +AEEDLK R EG++ G  QSG+P+F +       + L  A+K
Sbjct: 587 EIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVNDYNALVTAQK 646

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
           +A++++  DP L +   + ++ +L
Sbjct: 647 EARNLIKSDPALANPENKFLQEVL 670


>gi|285017596|ref|YP_003375307.1| ATP-dependent DNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283472814|emb|CBA15319.1| probable atp-dependent dna helicase protein [Xanthomonas
           albilineans]
          Length = 715

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 235/698 (33%), Positives = 372/698 (53%), Gaps = 34/698 (4%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P+      APL+T  GVG K +   +          +   DL  + P  + DR     ++
Sbjct: 9   PALSAAGEAPLTTLPGVGPKLAEKFA------ARGLSTLQDLWLHLPLRYEDRTRLTAVA 62

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGR 121
            +       +  ++ Q      + R   ++ + D + G + L FF  +       F  G 
Sbjct: 63  ALQPGVPAQVDVWV-QAVDRGFRYRPMLRVAVADASHGTLVLRFFQFRAAQAAQ-FVVGA 120

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           ++   G  K  ++ +  VHP Y F    +       ++ VY +  G+     +++I +AL
Sbjct: 121 RLRAFGTPKPGQHGLEFVHPSYQFLGEGEEVALGDRLDPVYPVVEGVGPATLRRLIGQAL 180

Query: 180 SRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPA----RERLAYDEL 233
            RLP     E +   LL +   PS+  A  + H P    D    +      ++RL  +EL
Sbjct: 181 DRLPEDASLELLPPVLLAELGLPSLRHALLVAHRPPPQADLAALAAGLHPAQQRLVLEEL 240

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA  ++L   R   +++    ++  G++ +++ +++PF  T +Q      I  D+ +   
Sbjct: 241 LAHHLSLRRQRIALQRQPAPSLHSRGRLVKRLQQSLPFQLTGAQLRVFAQIRADLERPAP 300

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           MLR++QGDVGSGKT+VA +A   AV+ G QA + AP  +LA+QH   ++ + +   + V 
Sbjct: 301 MLRLVQGDVGSGKTVVAAMAAMLAVDKGKQAALAAPTELLAEQHLTNLRTWLEPLGVRVA 360

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            + G +    R + L +IA G+A +++GTHAL Q ++ ++ L L IVDEQHRFGV QRL 
Sbjct: 361 WLAGKVTGKARSRVLAQIASGEAQVVVGTHALMQAAVTFHDLALAIVDEQHRFGVHQRLA 420

Query: 414 LTQK----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L  K    A  PH L+MTATPIPRTL + +  D+D+S I E P GR P++T+++   R  
Sbjct: 421 LRDKGASGAGVPHQLVMTATPIPRTLAMAAYADLDVSAIDELPPGRTPVQTIVLNAERRP 480

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV------------VERFNSLHEHFTS- 516
           E+++R++V  +EG++AYW+C  IE+ +++   +                F +L       
Sbjct: 481 ELVQRIRVACAEGRQAYWVCTLIEDAEDAETSAQAGAGNRLEASAAQATFETLSAQLPEL 540

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            + + HGRM   +K++ M +FK G   LL+ATT+IEVG+DV +AS++IIENAE  GLAQL
Sbjct: 541 RVGLAHGRMKSAEKQAAMRAFKQGEIDLLVATTIIEVGVDVPNASLMIIENAERLGLAQL 600

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG  +SSC+L+Y  PLS  +  RL  ++ T DGF+IAE+DL+ R  GE+LG 
Sbjct: 601 HQLRGRVGRGAAVSSCVLMYQAPLSAMARQRLETMRQTNDGFVIAEKDLELRGPGELLGT 660

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           +Q+G+  F +A       LL      A  +L   P L 
Sbjct: 661 RQTGLAAFRVADLARDAGLLPRVHALADRLLDASPALA 698


>gi|332300534|ref|YP_004442455.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177597|gb|AEE13287.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 697

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 233/692 (33%), Positives = 374/692 (54%), Gaps = 21/692 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++ L  PL+   G+G K +  +++ ++        + DLL+Y P  + DR     I  ++
Sbjct: 1   MSFLTTPLADLPGLGTKRAQLIAEELDL-----HTYRDLLYYIPYRYADRRVIYPIGTLT 55

Query: 66  EERI-VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
                V + G +   S+  L ++      L D TGE+ L++F +    ++     G K  
Sbjct: 56  PSMTEVQVEGILQPFSAPSLGRKSNLSARLMDDTGELLLVWF-KGHNYIQRALTPGCKYI 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-----VDLFKKIIVEAL 179
           V GK++   N++ + HP     +    +    + VY     L           + I + L
Sbjct: 115 VYGKLQLFNNQLQITHPEIKPADKPSPSVGGYQPVYRTTERLKRARIDSAFLGRYIDQLL 174

Query: 180 SR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
                 +PE + + L+  +    +  A   IH+P+     E    A+ RL YDEL    +
Sbjct: 175 QSPYFSIPETLSEPLVAHRHLAPLQTAIRWIHHPQS---VEQAQVAKFRLKYDELFYLNL 231

Query: 239 ALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            L  +   Q  +  G  ++  GK+   +   +P+  T +Q+  +++I +D +   +M R+
Sbjct: 232 YLRRLAVMQRMRYEGYRLDQVGKLFNGLYYALPYDLTGAQKRVLREIRRDTNSGAQMNRL 291

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL AM  AV+ G QA ++AP  ILAQQHYE I ++ +   + + ++TG
Sbjct: 292 LQGDVGSGKTLVALFAMLLAVDNGYQACMLAPTEILAQQHYETISEFVEGLDVSIALLTG 351

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR--LKLT 415
           +     RR+ L  +A+G   I+IGTHA+ ++ + ++KL + ++DEQHRFGV QR  L   
Sbjct: 352 SSKTRERRETLSALANGSLSILIGTHAILEERVAFHKLGMAVIDEQHRFGVAQRSKLWGK 411

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
              T PH+L+M+ATPIPRTL +T  GD+++S I E P GRKPI TV I   +   +   +
Sbjct: 412 NVLTLPHILVMSATPIPRTLAMTMYGDLEVSVIDEMPPGRKPITTVQIAEKKKKTLYSLI 471

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVM 534
              ++ G++ Y + P IE  +ES+F ++   +    E F    +  +HGR+S  DK   M
Sbjct: 472 NETINRGQQIYVVFPMIEGTEESDFANLEVGYKEYVERFGEERVVYVHGRLSAEDKAEQM 531

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F +G   +L+ATTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL
Sbjct: 532 ERFASGEVPILLATTVIEVGVNVPNATVMVINDAQRFGLAQLHQLRGRVGRGGDKSYCIL 591

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHD 653
           +    L  ++  R+  +  T+DGF IAEED++ R  G++ G +QSG +    IA P    
Sbjct: 592 VTPDDLQGDAKQRIDTMVATQDGFKIAEEDMRLRGFGQMEGTRQSGTLAGIRIADPVADY 651

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +LL + R D  ++L   P L     +  RI L
Sbjct: 652 NLLALTRLDVNYLLDYSPLLDKPDTELYRINL 683


>gi|186685619|ref|YP_001868815.1| ATP-dependent DNA helicase RecG [Nostoc punctiforme PCC 73102]
 gi|186468071|gb|ACC83872.1| ATP-dependent DNA helicase RecG [Nostoc punctiforme PCC 73102]
          Length = 831

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 232/681 (34%), Positives = 381/681 (55%), Gaps = 29/681 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           LS    +G K +  L+++            DLLFY+P   ID   +  I E+     VTI
Sbjct: 138 LSDLPEIGFKKADNLARL------GLHTVRDLLFYYPRDHIDYARQVNIRELQAGETVTI 191

Query: 73  TGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVFFEGR 121
              + + + F   K +   IL   + D +G+I +  FY  T          LK  +  G 
Sbjct: 192 VATVKRCNCFSSPKNQKLSILELVVKDNSGQIKIGRFYAGTRFSSRAWQESLKRRYPVGS 251

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
            +   G +K+ K  + + +P      +     + +N   +  +Y L  G+  +  ++ ++
Sbjct: 252 ILAACGLVKESKYGLTLDNPELEVLANPGDSIESLNIGRVVPIYGLTEGVVANTVRQAVI 311

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            AL     L + +   L QK     + +A   IH P  +   +     R RL +DE    
Sbjct: 312 AALPAAANLKDPLPSGLRQKYGLMELKDAIANIHFPSDSAALQVA---RRRLVFDEFFYL 368

Query: 237 QIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ LL  ++Q +      I    G++ +K    +PF  T +Q+  + DIL D+ +   M 
Sbjct: 369 QLGLLQRQQQARAIQTSAILVPRGQLVEKFHEILPFKLTGAQQRVLNDILNDLQKPVPMN 428

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA++A+ AA+++G QA +MAP  +LA+QHY  +  +     + VE++
Sbjct: 429 RLVQGDVGSGKTVVAVLAILAAIQSGYQAALMAPTEVLAEQHYRKLVSWFNLLHLPVELL 488

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG+   A RR+   ++  G+  +++GTHAL QDS+ + +L LV++DEQHRFGV+QR +L 
Sbjct: 489 TGSTKTAKRRQIHSQLGTGELPLLVGTHALIQDSVNFQQLGLVVIDEQHRFGVEQRARLQ 548

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK   PHVL MTATPIPRTL LT  GD+D+S+I E P GR+ I+T ++   + +   + +
Sbjct: 549 QKGEQPHVLTMTATPIPRTLALTIHGDLDVSQIDELPPGRQKIQTTVLSGQQRNHAYDLI 608

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESV 533
           +  + +G++ Y + P +EE ++ + RS V+    L E       + ++HGRMS  +K+  
Sbjct: 609 RREIVQGRQVYVVLPLVEESEKLDLRSAVDEHQKLQESVFPDFQVGLLHGRMSSAEKDES 668

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F++   ++L++TTV+EVG+DV +A++++IENAE FGL+QLHQLRGRVGR    S C+
Sbjct: 669 ITKFRDNQTQVLVSTTVVEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRDAAQSYCL 728

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+     S ++  RL VL+ ++DGF I+E D++ R  G++LG +QSG+P F +A     +
Sbjct: 729 LM-SSSRSPDAQQRLKVLEQSQDGFFISEMDMRFRGPGQVLGTRQSGVPDFTLASLVEDE 787

Query: 654 SLLEIARKDAKHILTQDPDLT 674
            +L +AR+ A+ I+  D  L 
Sbjct: 788 EVLLLARQAAEKIIEMDVTLE 808


>gi|291557450|emb|CBL34567.1| ATP-dependent DNA helicase RecG [Eubacterium siraeum V10Sc8a]
          Length = 677

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 240/672 (35%), Positives = 356/672 (52%), Gaps = 23/672 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS-EER 68
            +P+   +GVG+K +  L K+        T  + L  ++P  +ID +    IS++  +  
Sbjct: 9   DSPVCYIKGVGEKRAKLLEKL------GITTALQLAEHYPRGYIDFNETTAISDLVNDGE 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              +   +++       +   +K+L++DGTG++ + FF       +       +    GK
Sbjct: 63  NHVVKAIVTKKFPAYYGRINIFKVLVSDGTGDMLITFFNSDYSFTR--LKLDNEYCFYGK 120

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           +     R  M  P  +F +SQD N   +   YSL TG+S  +    I   L      PE 
Sbjct: 121 MAGDFLRKEMNSP--VFIDSQDPN--KLMPRYSLTTGISQGIMSNCIKNVLRDF-TFPEH 175

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   L+ K +  S   A   IH P      E    A+ RL ++EL   Q+ L  M+ + K
Sbjct: 176 LTDTLMDKYNLISYDNALRWIHFPENK---EQYDKAKYRLTFEELFLLQLGLKSMKNRKK 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  G P+  E K   +   ++PF+ T +Q  AI +   DM +   M R+LQGDVGSGKT 
Sbjct: 233 KLAGAPM--ESKSIDEYYSSLPFTLTGAQIRAISECCDDMQKSVPMNRLLQGDVGSGKTA 290

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA  A   A   G Q+ +MAP  ILA+QHY+ + K+     + + ++TG+   A +++  
Sbjct: 291 VAAGAAYFAYLNGYQSTLMAPTEILAKQHYDTLYKFLAPLGVTIALLTGSQTPAQKKQIR 350

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           + IA GQ  + +GT AL Q S ++  L LVI DEQHRFGV QR  L  K   PHVL+M+A
Sbjct: 351 QLIADGQIDVAVGTQALIQKSTKFSSLGLVITDEQHRFGVGQRAALGSKGNEPHVLVMSA 410

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +   GD+DIS + E P GR PI+T  +  +  + +   +   ++ G +AY +
Sbjct: 411 TPIPRTLGMIIYGDLDISILDEMPKGRLPIRTYAVDTSYRERLYRFILKYVNNGFQAYIV 470

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE   S   +  E  NSL     +++   ++HG+M   DK++VM  FK+   K+L+
Sbjct: 471 CPLIEE-GVSEKAAATEYINSLQNTCLANVPTGLLHGKMKQADKDAVMQDFKDNKLKVLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT+VIEVG+DV +A +++IENAE FGL+QLHQLRGRVGRG E S CIL+     S  +  
Sbjct: 530 ATSVIEVGVDVPNAVVMVIENAEQFGLSQLHQLRGRVGRGTEQSHCILVTDNK-SDYTKQ 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+  +  T DGF IA EDLK R  G+  G KQ G+P+  IA       +L++  + A  I
Sbjct: 589 RMDTMVKTSDGFEIANEDLKLRGPGDFFGSKQHGLPQLKIADIYADLDILKMTGEAADDI 648

Query: 667 LTQDPDLTSVRG 678
           L  D  L     
Sbjct: 649 LRDDSRLEKPEN 660


>gi|167750970|ref|ZP_02423097.1| hypothetical protein EUBSIR_01955 [Eubacterium siraeum DSM 15702]
 gi|167656149|gb|EDS00279.1| hypothetical protein EUBSIR_01955 [Eubacterium siraeum DSM 15702]
          Length = 677

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 240/673 (35%), Positives = 357/673 (53%), Gaps = 23/673 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS-EER 68
            +P+   +GVG+K +  L K+        T  + L  ++P  +ID +    IS++  +  
Sbjct: 9   DSPVCYIKGVGEKRAKLLEKL------GITTALQLAEHYPRGYIDFNETTAISDLVNDGE 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              +   +++       +   +K+L++DGTG++ + FF       +       +    GK
Sbjct: 63  NHVVKAIVTKKFPAYYGRINIFKVLVSDGTGDMLITFFNSDYSFTR--LKLDNEYCFYGK 120

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           +     R  M  P  +F +SQD N   +   YSL TG+S  +    I   L      PE 
Sbjct: 121 MAGDFLRKEMNSP--VFIDSQDPN--KLMPRYSLTTGISQGIMSNCIKNVLRDF-TFPEH 175

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   L+ K S  S   A   IH P      E    A+ RL ++EL   Q+ L  M+ + K
Sbjct: 176 LSDTLMDKYSLISYDNALRWIHFPENK---EQYDKAKYRLTFEELFLLQLGLKSMKNRKK 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +  G P+  E K   +   ++PF+ T +Q  AI +   DM +   M R+LQGDVGSGKT 
Sbjct: 233 RLAGAPM--ESKSIDEYYSSLPFTLTGAQIRAISECCDDMQKSVPMNRLLQGDVGSGKTA 290

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA  A   A   G Q+ +MAP  ILA+QHY+ + K+     + + ++TG+   A +++  
Sbjct: 291 VAAGAAYFAYLNGYQSTLMAPTEILAKQHYDTLYKFLAPLGVTIALLTGSQTPAQKKQIR 350

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           + IA GQ  + +GT AL Q S ++  L LVI DEQHRFGV QR  L  K   PHVL+M+A
Sbjct: 351 QLIADGQIDVAVGTQALIQKSTRFSSLGLVITDEQHRFGVGQRAALGSKGNEPHVLVMSA 410

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +   GD+DIS + E P GR PI+T  +  +  + +   +   ++ G +AY +
Sbjct: 411 TPIPRTLGMIIYGDLDISILDEMPKGRLPIRTYAVDTSYRERLYRFILKYVNNGFQAYIV 470

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE   S   +  E  NSL     +++   ++HG+M   DK++VM  FK+   K+L+
Sbjct: 471 CPLIEE-GVSEKAAATEYINSLQNTCLANVPTGLLHGKMKQADKDAVMQDFKDNKLKVLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT+VIEVG+DV +A +++IENAE FGL+QLHQLRGRVGRG E S CIL+     S  +  
Sbjct: 530 ATSVIEVGVDVPNAVVMVIENAEQFGLSQLHQLRGRVGRGTEQSHCILVTDNK-SDYTKQ 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+  +  T DGF IA EDLK R  G+  G KQ G+P+  IA       +L++  + A  I
Sbjct: 589 RMDTMVKTSDGFEIANEDLKLRGPGDFFGSKQHGLPQLKIADIYADLDILKMTGEAADDI 648

Query: 667 LTQDPDLTSVRGQ 679
           L  D  L     +
Sbjct: 649 LRDDSRLEKPENR 661


>gi|33862854|ref|NP_894414.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
           9313]
 gi|33634770|emb|CAE20756.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9313]
          Length = 846

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 239/698 (34%), Positives = 381/698 (54%), Gaps = 33/698 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PLS  +G+G K +  L+ +      +  +      Y+P  ++D     +I  +    
Sbjct: 147 LESPLSEVKGIGPKLAERLAGLGLLLVKDLLQ------YYPRDYVDYSSLRRIQALEAGE 200

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRK-----TEMLK---NVF 117
             TI   + +   F   +     IL   L D TG + +  F+          LK    ++
Sbjct: 201 AATIVATVRRCHGFTSPRNPNLSILELQLQDPTGRLKVRRFFAGRRFSSPAYLKSQSRLY 260

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-----NFPLIEAVYSLPTGLSVDLFK 172
             G  + V+G +K     +    P      S        +   +  VY+L  GL+ D F+
Sbjct: 261 PPGVTVAVSGLVKGGPYGMSFQDPLIEVMESPHSPLRSQSIGRLLPVYALTEGLTADRFR 320

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            ++++ L      PE + +   Q    P  ++A   IH+P   +  +     R RL +DE
Sbjct: 321 DLVLQILPLAASWPESLPEQRRQVLRLPRRSDALVAIHHPDDQQTLQSA---RRRLVFDE 377

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKI---AQKILRNIPFSPTKSQESAIKDILQDMS 289
            L  Q+ LL  R + ++     +   G+      + L  +PF  T +Q+  + +I  D+ 
Sbjct: 378 FLLLQLGLLKRRAELRRCSAPVLQTAGRRDGLVARFLELLPFPLTAAQQRVLTEIEADLV 437

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
               M R++QGDVGSGKT+VA+ A+  AVEAG Q   MAP  +LA+QHY  +  +     
Sbjct: 438 LSEPMARLIQGDVGSGKTVVAIAALLTAVEAGWQGAFMAPTEVLAEQHYRTLCCWLPQLH 497

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + VE++TG   +  RR+ L+ + +G   I++GTHAL +D + + +L LV+VDEQHRFGV+
Sbjct: 498 VSVELLTGATTRIRRRQILDDLVNGSLKILVGTHALIEDPVAFSRLGLVVVDEQHRFGVK 557

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI+T +I     D
Sbjct: 558 QRNRLLNKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIQTQMIRGCDRD 617

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSD 527
           +  + ++  +S G++AY + P IE+ ++ + RS V+    L E      ++ ++HGR+S 
Sbjct: 618 QAYQLIRDQVSRGQRAYVVLPLIEDSEKLDLRSAVKVHAHLSEQVFEEFTVGLLHGRLSS 677

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K+ V+ SF  G C++L++TTV+EVG+DV  AS+++I++A+ FGLAQLHQLRGRVGRG 
Sbjct: 678 SEKQGVIQSFAAGDCQVLVSTTVVEVGVDVPQASVMVIDHADRFGLAQLHQLRGRVGRGA 737

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C+L+ +   +  +  RL VL  + DGF IAE DL+ R  G++LG KQSG+P   +A
Sbjct: 738 AASHCVLI-NDSTNPLARQRLEVLVRSSDGFEIAEIDLRLRGPGQVLGTKQSGLPDLALA 796

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                 ++LE AR +A+ +L++DP+LT      ++ LL
Sbjct: 797 SLADDGAVLEEARDEAQRLLSEDPNLTD--HSRLKELL 832


>gi|228470578|ref|ZP_04055435.1| ATP-dependent DNA helicase RecG [Porphyromonas uenonis 60-3]
 gi|228307705|gb|EEK16681.1| ATP-dependent DNA helicase RecG [Porphyromonas uenonis 60-3]
          Length = 697

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 229/692 (33%), Positives = 374/692 (54%), Gaps = 21/692 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++ L  PL+   G+G K +  +++ ++        + DLL++ P  + DR     I  + 
Sbjct: 1   MSFLTTPLADLPGLGTKRAQLIAEELDL-----HTYRDLLYHIPYRYADRRVIYPIGSLM 55

Query: 66  EER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
                V + G +   S+  L ++      L D TGE+ L++F +  + ++     G K  
Sbjct: 56  PSMSEVQVEGILQPFSAPSLGRKSNLSARLMDDTGELLLVWF-KGQDYIQRSLTPGCKYI 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS-----VDLFKKIIVEAL 179
           V GK++   N++ + HP     +  + +    + +Y +   L           + I + L
Sbjct: 115 VYGKLQLFNNQLQITHPEIKLADKPNPSVGGYQPIYRITERLKRSRIDSAFLGRYIDQLL 174

Query: 180 SR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
                 +PE + + L+  +    +  A   IH+P+     E    A+ RL YDEL    +
Sbjct: 175 QSPYFSIPETLSEPLIAHRHLVPLQTAIRWIHHPQS---VEQAQVAKFRLKYDELFYLNL 231

Query: 239 ALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            L  +   Q  +  G  ++  G +   +   +P+  T +Q+  +++I +D +   +M R+
Sbjct: 232 YLRRLAVMQRMRYEGYRLDQVGPLFNSLYHALPYDLTGAQKRVLREIRRDTNSGAQMNRL 291

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL AM  AV+ G QA ++AP  ILAQQHYE I ++ +   + + ++TG
Sbjct: 292 LQGDVGSGKTLVALFAMLLAVDNGYQACMLAPTEILAQQHYETISEFVEGLDVSIALLTG 351

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR--LKLT 415
           +     RR+ L  +A G   I+IGTHA+ ++ + + KL + ++DEQHRFGV QR  L   
Sbjct: 352 SSKTRERRETLSALADGSLSILIGTHAILEERVAFRKLGMAVIDEQHRFGVAQRSKLWGK 411

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
              T PH+L+M+ATPIPRTL +T  GD+++S I E P GRKPI TV I   + + +   +
Sbjct: 412 NVLTLPHILVMSATPIPRTLAMTMYGDLEVSVIDEMPPGRKPITTVQIAEKKKETLYSLI 471

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVM 534
              ++ G++ Y + P IE  +ES+F ++   +    E F    +  +HGR+S  DK   M
Sbjct: 472 NETINRGQQIYVVFPMIEGTEESDFANLEVGYKEYVERFGEERVVYVHGRLSAEDKAEQM 531

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F +G   +L+ATTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S C+L
Sbjct: 532 ERFASGEVPILLATTVIEVGVNVPNATVMVINDAQRFGLAQLHQLRGRVGRGGDKSYCLL 591

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHD 653
           +    L  ++  R+  +  T+DGF IAEED++ R  G++ G +QSG +    IA P    
Sbjct: 592 VTPDDLQGDAKQRIDTMVATQDGFKIAEEDMRLRGFGQMEGTRQSGTLAGISIADPVADY 651

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +LL + R D  ++L   P L     +  RI L
Sbjct: 652 NLLALTRLDVNYLLDYSPLLDKPDTELYRINL 683


>gi|302386340|ref|YP_003822162.1| ATP-dependent DNA helicase RecG [Clostridium saccharolyticum WM1]
 gi|302196968|gb|ADL04539.1| ATP-dependent DNA helicase RecG [Clostridium saccharolyticum WM1]
          Length = 683

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 224/685 (32%), Positives = 364/685 (53%), Gaps = 16/685 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            +++ +G+G+K      K+            DLL Y+P ++        + E+  ++++T
Sbjct: 5   SINSLKGIGEKTGKLFQKV------GVITVEDLLEYYPRAYDTYEEPSPLGELKPDQVMT 58

Query: 72  ITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           + G + +    +     +     L D TG + L ++      L      G +    G++ 
Sbjct: 59  VAGMLYKTPDVKRYSHIQVITTTLKDMTGTLLLTWYN--MPYLHTTLKAGMRAVFRGRVV 116

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           K   R+ M  P      + +     ++ VY    GLS     +   +ALS   ++ +++ 
Sbjct: 117 KKNGRLTMEQPEVFTAEAYEQVVHSMQPVYGQTKGLSNKTIVRAQRQALSLRSMVRDYMP 176

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
            DL +K        A   IH P    +  +    R+RL +DE     +A+  ++++ + +
Sbjct: 177 ADLRRKHELAEYNFAMEHIHFPTDRSELLFA---RKRLVFDEFFLFLMAVRRLKERREDK 233

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
               +    +  + + +++P+S TK+Q+  + +I  D+S    M R++QGDVGSGKT++A
Sbjct: 234 KSAYVLNLSQEVETLRKSLPYSLTKAQQKVLTEIYGDLSGGRVMNRLIQGDVGSGKTIIA 293

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRKAL 368
           ++++  A   G Q  +MAP  +LA+QH E + +      I     ++TG+M    +R A 
Sbjct: 294 ILSLLQAAYNGYQGALMAPTEVLAKQHLESMTELFAAHHIDKKPILVTGSMTAKEKRIAY 353

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E+IA  +A IIIGTHAL QD + Y  L LVI DEQHRFGV QR  L +K   PHVL+M+A
Sbjct: 354 EKIASHEADIIIGTHALIQDKVIYDNLALVITDEQHRFGVGQRELLGKKGEEPHVLVMSA 413

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +   GD+DIS I E PA R PIK  ++      +  E ++  +  G++AY I
Sbjct: 414 TPIPRTLAIIIYGDLDISVIDELPANRLPIKNCVVDTGYRKKAYEFIRKEIGNGRQAYVI 473

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           CP +E  +  +  +V++   +L E     ++  +HG+M   +K  +M+ F  G  K+L++
Sbjct: 474 CPMVEASEMIDAENVLDYTKTLREALPGITVEYLHGKMKPKEKNGIMERFACGEIKVLVS 533

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CI +      + +  R
Sbjct: 534 TTVIEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGKYQSYCI-MVGASDQEGTKER 592

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L +L  + DGF IA EDLK R  G+I GI+QSG  +F +       +LL+   ++ K I 
Sbjct: 593 LDILNQSNDGFFIASEDLKLRGPGDIFGIRQSGDLEFKLGDIFTDANLLKTVSEEVKRIF 652

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNE 692
           T+DP+L     Q ++  L  Y    
Sbjct: 653 TEDPELEKEEHQELKRKLKEYLEKS 677


>gi|300811693|ref|ZP_07092168.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497320|gb|EFK32367.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 679

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 226/676 (33%), Positives = 363/676 (53%), Gaps = 26/676 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            +F P++  +GVG K +  L  +            DLLFY P  + +      + ++ + 
Sbjct: 6   AIFRPVTALKGVGAKTAEALQSL------GIYSIYDLLFYFPYRYDELENL-PLDQLEDG 58

Query: 68  RIVTITGYISQHSS---FQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           + V + G ++ +     F   K R  +K+ ++     I + FF +    L      G++I
Sbjct: 59  QKVMLKGIVATNPYQNYFGYHKSRVSFKLRIDHD--IIMVNFFNQ--PWLTKQLSVGQEI 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182
            V GK    K  +      Y    +++ +   +  +YS+   +     + +I  A++  +
Sbjct: 115 AVYGKYDLRKQSLSA----YKLLANKNSDDG-MAPIYSVNRQIKQKKLQTMIDLAIAESM 169

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             +   + +DL +     +  +    +H+P   KD      AR    + E    Q+ L L
Sbjct: 170 DEMGNAVPEDLRKHYRLMADQDLVIAMHHP---KDLTEAKEARRSAVFREFFLFQMQLAL 226

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M  Q K   G   + + +   K+ +++PF+ +  Q+  I +I  DM    +M R+LQGDV
Sbjct: 227 MSSQNKSHSGYAKHYDLEEIGKLTKSLPFALSPDQKKVINEIFADMFVDQQMQRLLQGDV 286

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA+ A+  AV AG QA +M P  ILA QHY  I    ++  + V ++TG+    
Sbjct: 287 GSGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTKTM 346

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            RR+  + +A G  +++IGTHAL Q+ + + KL LVI+DEQHRFGV QRL L  K   P 
Sbjct: 347 ERREIYKELADGSINVVIGTHALIQEQVAFKKLGLVIIDEQHRFGVVQRLALINKGDRPD 406

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L MTATPIPR+L LT  GD  +S+I   PAGRKPIK+     +++DEV   ++  L+EG
Sbjct: 407 ILAMTATPIPRSLALTVYGDTALSEIRHLPAGRKPIKSYWKTSSQLDEVYSLMRQQLAEG 466

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGT 541
            + Y + P I E +  +  +     + L   F    + ++HG+M+  DKE +MD F  G 
Sbjct: 467 FQIYAVTPLISESETIDLENAEALHDRLAGEFPDQEVVLLHGKMAAADKEQIMDRFAAGE 526

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ T+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG+  S C+ L  P  +
Sbjct: 527 VDILVTTSVIEVGVDVANANLMVIFDADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-T 585

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F          ++ +AR 
Sbjct: 586 EAGKQRMKIVAETNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRTGSVVSDYQVMVVARD 645

Query: 662 DAKHILTQDPDLTSVR 677
           +AK I+  DPDL + +
Sbjct: 646 EAKRIVQADPDLKAEK 661


>gi|253995560|ref|YP_003047624.1| ATP-dependent DNA helicase RecG [Methylotenera mobilis JLW8]
 gi|253982239|gb|ACT47097.1| ATP-dependent DNA helicase RecG [Methylotenera mobilis JLW8]
          Length = 680

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 226/608 (37%), Positives = 344/608 (56%), Gaps = 8/608 (1%)

Query: 51  SFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKT 110
            +ID  +   + ++       + G I  H+    + R+     L D +G++TL F +   
Sbjct: 36  RYIDETHVTAVRDLRMGESAQVEGEIV-HAEVSYKPRKALIARLEDASGQLTLRFLHFYP 94

Query: 111 EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDL 170
             + N    G  + V G+++       MVHP       + +    +  VY    GLS   
Sbjct: 95  SQI-NALKVGNTLRVYGEVRSGFFGYEMVHPTCKAVGEKTIVAETLTPVYPTVAGLSQAS 153

Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW----TSPARE 226
            +K I  AL +   + E +   L    + PS A +   +H+P            ++    
Sbjct: 154 LRKAIGIALQQQGEMHETLPAALYADLNLPSFAASLVALHHPHPEVSLRALENKSTAHWR 213

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286
           RLA+DELLA Q+++     + +           ++   +L+++PF+ T +Q+    +I  
Sbjct: 214 RLAFDELLAQQLSMRKHYARRRSVSAPQFKRSKQLISALLKSLPFALTSAQQKVALEIEH 273

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           D++Q + M R+LQGDVGSGKT+VA +A    VE G Q  +MAP  ILA+QHY  +  + Q
Sbjct: 274 DLTQAHPMQRLLQGDVGSGKTIVACMAALQCVENGWQVALMAPTEILAEQHYRKMLSWLQ 333

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              I +  +TG+  +  R  AL  IA+G+A +++GTHALFQ+++++  L L I+DEQHRF
Sbjct: 334 PLDIKIAWLTGSQSKKDRDTALASIANGEAKLVVGTHALFQEAVRFKSLGLAIIDEQHRF 393

Query: 407 GVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           GV QRL L QK    PH L+M+ATPIPRTL ++   D+D+S I E P GR PI T I+  
Sbjct: 394 GVHQRLALRQKGQPEPHQLMMSATPIPRTLSMSYYADLDVSVIDELPPGRSPIVTKIVSD 453

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524
            R +E+++R++    +G +AYW+CP IEE +     +  + +  + E F    I ++HGR
Sbjct: 454 ARREEILQRVREACLQGNQAYWVCPLIEESEALQLATANDTYALMQEEFPELRIGLVHGR 513

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   +K++VM  F  G  +LL+ATTVIEVG+DV +AS+++IE+AE  GL+QLHQLRGRVG
Sbjct: 514 MKPSEKQAVMAEFSAGHTQLLVATTVIEVGVDVPNASLMVIEHAERMGLSQLHQLRGRVG 573

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           RG   S+CILLY   LS+ +  RL V+  + DGF IA+ DL+ R  GE+LG++QSG+P  
Sbjct: 574 RGAAKSTCILLYQNKLSETARARLKVIYESNDGFAIAQADLQIRGPGELLGVRQSGVPML 633

Query: 645 LIAQPELH 652
            IA  E  
Sbjct: 634 KIADLERD 641


>gi|282600913|ref|ZP_05980107.2| ATP-dependent DNA helicase RecG [Subdoligranulum variabile DSM
           15176]
 gi|282570824|gb|EFB76359.1| ATP-dependent DNA helicase RecG [Subdoligranulum variabile DSM
           15176]
          Length = 694

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 223/678 (32%), Positives = 347/678 (51%), Gaps = 21/678 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           + + +   +GVG  ++    K+            DLL  +P  +ID      ++    + 
Sbjct: 18  IDSSIQYLKGVGPAFAKKFEKL------GVHTIRDLLLCYPRKYIDYTQPYTVASAPYDV 71

Query: 69  IVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              +   + Q    +     R   + L  D +G + L +F        +    G+     
Sbjct: 72  DCCVKATVLQKEPARRIKGGRVLSRALAADDSGVLALSWFN--ASYAADKLIVGQTYYFE 129

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           G++        ++HP  +      V       VY    GL           AL+ +  L 
Sbjct: 130 GRVGGTLTHRELLHP--LVRTEAQVAASPFVPVYHGTEGLPASRQASCAQAALAYVEELQ 187

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + +  +LL +   P+ A+A   +H PR   D    +  R RL ++EL   QI + L+R  
Sbjct: 188 DPLPPELLIRYRMPTKAQAVRAVHAPRNQADL---AAGRRRLIFEELYLLQIGIFLLRSH 244

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            +++   P+            ++P+ PT +Q  A ++IL D+     M R+LQGDVGSGK
Sbjct: 245 GRRQTSAPMRP--MKLDPFWGSLPYQPTGAQRRATEEILHDLCADVPMNRLLQGDVGSGK 302

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVA  A+  A + G Q+ ++AP  ILA+QH   +    +   I V ++ G M  + +R 
Sbjct: 303 TLVAAAAIWFAAQNGWQSAMLAPTEILARQHAATLADRLEPFGINVTLLVGGMKASEKRI 362

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
           AL  IA G+A +++GTHA+  DS+ +  L L IVDEQHRFGV+QR  L  KA +PH+L+M
Sbjct: 363 ALSAIADGRAGLVVGTHAVLTDSVVFKNLGLAIVDEQHRFGVRQRGLLAGKAQSPHLLVM 422

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL L   GD+DIS + E P GRKPIKT  I   +  ++   L   +  G + Y
Sbjct: 423 SATPIPRTLGLLMYGDLDISVLDELPPGRKPIKTWFINGKKRRDMYGFLDKQIEAGHQVY 482

Query: 487 WICPQIEEKK-ESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            +CP IEE + ++  ++V + +  +         I ++HG+M   +K+ VM  FK G   
Sbjct: 483 IVCPAIEENELDTGMQAVNKYYTEVACAMLPHRRIGLLHGKMKPKEKDEVMQQFKAGELD 542

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG+DV +A+ ++IENAE FGL+ LHQLRGRVGRG   S CIL+     + +
Sbjct: 543 VLVSTTVIEVGVDVPNATAMVIENAERFGLSALHQLRGRVGRGAADSCCILISDNE-NDS 601

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              RL  L +T DGF +A+ DL+ R  G+  G  Q G+P   +A        L +A+ +A
Sbjct: 602 VRERLRFLCHTSDGFAVAKYDLETRGPGDFFGQAQHGLPTLRVADLVQDTRTLRVAQDEA 661

Query: 664 KHILTQDPDLTSVRGQSI 681
           K +L  DP+LT    +++
Sbjct: 662 KALLAADPNLTDPGHRAL 679


>gi|254431018|ref|ZP_05044721.1| ATP-dependent DNA helicase RecG [Cyanobium sp. PCC 7001]
 gi|197625471|gb|EDY38030.1| ATP-dependent DNA helicase RecG [Cyanobium sp. PCC 7001]
          Length = 807

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 384/711 (54%), Gaps = 31/711 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L+P  APL T RGVG + +  L+++            DL+ Y+P  ++D  +R +I+ + 
Sbjct: 107 LDP-EAPLGTIRGVGPRTAARLAQL------GLFVVRDLVHYYPRDYLDYAHRVRIAGLE 159

Query: 66  EERIVTITGYISQHSSFQLQKR---RPYKILLNDGTGEITLLFFYRKTEM--------LK 114
             R  TI   + +  +F   +       ++ L+D TG + +  F+              +
Sbjct: 160 VGRTATIVATVRRCQAFTSPRNPNLGILELQLSDPTGRLRVSRFFAGRRFASPAWLKAQQ 219

Query: 115 NVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-----FPLIEAVYSLPTGLSVD 169
             +  G  + V+G +K+         P      S            +  VY L  GL  D
Sbjct: 220 RQYPPGASVAVSGLVKETPYGPAFQDPLIEVLESPQATVRSPVIGRLLPVYGLTEGLGAD 279

Query: 170 LFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
             ++ I   L ++    + + + L         AEA   IH P    D E     R RL 
Sbjct: 280 RLRQAIAAVLPQVRQWDDPLPQALRHAHGLVGRAEALEQIHAP---ADQEQLQAGRHRLV 336

Query: 230 YDELLAGQIALLLMRKQFKKEIGIPI--NVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           +DE L  Q+ LL  R++  +    P+   V   +  + L  +PF  T +Q+  I +I  D
Sbjct: 337 FDEFLLLQLGLLQRRRELTRSPSPPLQSPVHDSLMARFLELLPFQLTPAQQRVIAEIRAD 396

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           ++++  M R++QGDVGSGKT+VA+ A+  A++AG Q  +MAP  +LA+QHY+ +  +   
Sbjct: 397 LAREQPMARLVQGDVGSGKTVVAIAALLTAIDAGCQGALMAPTEVLAEQHYQKLCAWLPQ 456

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             +   ++TG+ P   RR+ LE +A+GQ  +++GTHAL +D + + +L LV+VDEQHRFG
Sbjct: 457 LHVSCALLTGSTPARRRRRLLEDLANGQLQMLVGTHALLEDPVAFARLGLVVVDEQHRFG 516

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           V QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I   P GR PI+T ++    
Sbjct: 517 VAQRDRLLAKGLQPHLLTMTATPIPRTLALSVHGDLDVSQIDGLPPGRTPIQTRLLRAGE 576

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRM 525
            DE  + ++  +S G++AY + P +EE ++ + RS VE    L E       + ++HGRM
Sbjct: 577 RDEAYQLIRKEVSRGQRAYVVLPLVEESEKLDLRSAVEVHQQLSEAIFPDLCVGLLHGRM 636

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +  DK++ + +F  G  ++L++TTV+EVG+DV +AS++++E+AE FGLAQLHQLRGRVGR
Sbjct: 637 ASADKQAALAAFAAGESQVLVSTTVVEVGVDVPEASVMVVEHAERFGLAQLHQLRGRVGR 696

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
           G   S C+L+ H   +  +  RL VL  + DGF IAE DL+ R  G++LG +QSG+P   
Sbjct: 697 GAAASHCLLVNH-SRNALARQRLDVLVRSSDGFEIAEMDLRLRGPGQVLGTRQSGLPDLA 755

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
           +A      S+LE AR  A+ IL  DP+L      +  + L   + +   + 
Sbjct: 756 LASLTDDGSVLEQARAVAQEILAADPELQHHPKLAAMLALQRQRLSGGVRL 806


>gi|325685873|gb|EGD27939.1| DNA helicase RecG [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 679

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 226/676 (33%), Positives = 363/676 (53%), Gaps = 26/676 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            +F P++  +GVG K +  L  +            DLLFY P  + +      + ++ + 
Sbjct: 6   AIFRPVTALKGVGAKTAEALQSL------GIYSIYDLLFYFPYRYDELENL-PLDQLEDG 58

Query: 68  RIVTITGYISQHSS---FQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           + V + G ++ +     F   K R  +K+ ++     I + FF +    L      G++I
Sbjct: 59  QKVMLKGIVATNPYQNYFGYHKSRVSFKLRIDHD--IIMVNFFNQ--PWLTKQLSVGQEI 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182
            V GK    K  +      Y    +++ +   +  +YS+   +     + +I  A++  +
Sbjct: 115 AVYGKYDLRKQSLSA----YKLLVNKNSDDG-MAPIYSVNRQIKQKKLQTMIDLAIAESM 169

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             +   + +DL +     +  +    +H+P   KD      AR    + E    Q+ L L
Sbjct: 170 DEMGNAVPEDLRKHYRLMADQDLVIAMHHP---KDLTEAKEARRSAVFREFFLFQMQLAL 226

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M  Q K   G   + + +   K+ +++PF+ +  Q+  I +I  DM    +M R+LQGDV
Sbjct: 227 MSSQNKSHSGYAKHYDLEEIGKLTKSLPFALSPDQKKVINEIFADMFVDQQMQRLLQGDV 286

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA+ A+  AV AG QA +M P  ILA QHY  I    ++  + V ++TG+    
Sbjct: 287 GSGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTKTM 346

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            RR+  + +A G  +++IGTHAL Q+ + + KL LVI+DEQHRFGV QRL L  K   P 
Sbjct: 347 ERREIYKELADGSINVVIGTHALIQEQVAFKKLGLVIIDEQHRFGVVQRLALINKGDRPD 406

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L MTATPIPR+L LT  GD  +S+I   PAGRKPIK+     +++DEV   ++  L+EG
Sbjct: 407 ILAMTATPIPRSLALTVYGDTALSEIRHLPAGRKPIKSYWKTSSQLDEVYSLMRQQLAEG 466

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGT 541
            + Y + P I E +  +  +     + L   F    + ++HG+M+  DKE +MD F  G 
Sbjct: 467 FQIYAVTPLISESETIDLENAEALHDRLAGEFPDQEVVLLHGKMAAADKEQIMDRFAAGE 526

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ T+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG+  S C+ L  P  +
Sbjct: 527 VDILVTTSVIEVGVDVANANLMVIFDADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-T 585

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F          ++ +AR 
Sbjct: 586 EAGKQRMKIVAETNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRTGSVVSDYQVMVVARD 645

Query: 662 DAKHILTQDPDLTSVR 677
           +AK I+  DPDL + +
Sbjct: 646 EAKRIVQADPDLKAEK 661


>gi|223043764|ref|ZP_03613807.1| ATP-dependent DNA helicase RecG [Staphylococcus capitis SK14]
 gi|222442861|gb|EEE48963.1| ATP-dependent DNA helicase RecG [Staphylococcus capitis SK14]
          Length = 682

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 216/659 (32%), Positives = 360/659 (54%), Gaps = 18/659 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VT+
Sbjct: 13  LDKIKGIGPKRLTILEEL------NINTVEDLVLYLPTRYEDNTVI-DLNQAEDQSTVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +    +     R   K+ ++     I +   +     LK        +TV GK  + 
Sbjct: 66  QGEVYSTPAVAFFGRNKSKLTVHIMVNNIAVKCVFFNQPYLKKKIELHGTVTVKGKWNRA 125

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192
           K  I      +    +QD     +E VY +  G+     +  I +AL  +  + EW+  D
Sbjct: 126 KQEINGNRMFFNEQTTQDDVQ--LEPVYRIKEGIKQKQIRDNIRQALEDV-TIHEWLSDD 182

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEI 251
           L +K    ++      +H+P   KD +    AR   A+ EL   ++ +  L R +   + 
Sbjct: 183 LREKYKLETLEYTLRTLHHP---KDKQSLLKARRTYAFTELFMFELRMQWLNRLEKSSDE 239

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            I I+ +    ++ +  +PF  T +Q++++ +I +D+    RM R+LQGDVGSGKT+VA 
Sbjct: 240 AIEIDYDISKVKQFINRLPFELTDAQKTSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAA 299

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           I M A   AG Q+ +M P  ILA+QH E + +   +T   V ++TG++    RR  LE++
Sbjct: 300 ICMYALKTAGFQSALMVPTEILAEQHAESLIELFGDTM-NVALLTGSVKGKKRRILLEQL 358

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MTATPI
Sbjct: 359 ENGSIDCLIGTHALIQDDVVFENVGLVITDEQHRFGVNQRQMLREKGAMTNVLFMTATPI 418

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL ++  G++D+S I + P GRKPI T      + ++V+ ++   L +G++AY ICP 
Sbjct: 419 PRTLAISVFGEMDVSSIKQLPKGRKPIITSWAKHEQYEQVLAQMTSELRKGRQAYVICPL 478

Query: 492 IEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           IE  +   + ++VV  + SL E++ +  + ++HG+++  +K+ VM  F +    +L++TT
Sbjct: 479 IESSEHLEDVQNVVALYESLQEYYGAEKVGLLHGKLTSDEKDEVMQRFSDKDIDILVSTT 538

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R++
Sbjct: 539 VVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERMT 597

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           ++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 598 IMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAELIQ 656


>gi|291563511|emb|CBL42327.1| ATP-dependent DNA helicase RecG [butyrate-producing bacterium
           SS3/4]
          Length = 684

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 223/691 (32%), Positives = 367/691 (53%), Gaps = 16/691 (2%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
              + T +G+G+K +    K+            DLL Y+P  +        I E+SE+  
Sbjct: 4   DQSIETLKGIGEKTAKLFEKV------GIRTIDDLLHYYPRGYDTYGEPKAIGELSEDET 57

Query: 70  VTITGYISQHSS-FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            T+ G++   ++   +      +  ++D TG++ L++++     LKN           G+
Sbjct: 58  GTVEGFLKSGATGVHVNGLSIVQATISDMTGKLRLVWYH--MPYLKNTLRPDSHFIFRGR 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           + + KN + M  P      + +     +  VY+   GL   +    + +AL+   +  ++
Sbjct: 116 VIRKKNGLTMEQPQMFKPEAYEELLSSMRPVYAQTKGLGNKMITSAVEQALAFRTLERDY 175

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   L           A   IH P   ++      AR+RL YDE     +A+  ++++ +
Sbjct: 176 LPAGLRIANELAEYNFAIEHIHFPSNEEEL---KFARKRLVYDEFFFFLLAVRHLKEKRQ 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
                    +    +K+L ++P+  T +Q   ++++L+D+   + M R++QGDVGSGKT+
Sbjct: 233 NVQSPFHMEKQDECRKLLADLPYRLTNAQLRTLEEVLRDLKSGSVMNRLIQGDVGSGKTI 292

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRK 366
           +A++A+ AA E G Q  +M P  +LA+QH+E + +  +   +   V ++TG+M    +R 
Sbjct: 293 IAVLALLAACENGYQGALMVPTEVLARQHFESVTELFEKHGVDKKVILLTGSMTAKEKRI 352

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
           A E++A  +A IIIGTHAL Q+ I Y  L LVI DEQHRFGV QR     K   PHVL+M
Sbjct: 353 AYEKVASHEADIIIGTHALIQEKIVYDNLALVITDEQHRFGVAQREMFGNKGQMPHVLVM 412

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL +   GD+DIS I E PA R PIK  ++  +        ++  +  G++AY
Sbjct: 413 SATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVDKSYRPRAYRFIENEVKNGRQAY 472

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            ICP +EE +  +  +V++    L ++     +  +HG+M   +K  +M+ F  G  ++L
Sbjct: 473 VICPMVEESEMIDAENVLDYTKILRQNLPGIRVEYLHGKMKGKEKNKIMEEFAAGEIQVL 532

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG++ S CI + +   +K   
Sbjct: 533 VSTTVIEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGDKQSYCI-MVNASGNKEKN 591

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL VL  + DGF IA EDLK R  G+I GI+QSG  +F +A        L+   +D   
Sbjct: 592 RRLDVLNKSNDGFYIASEDLKLRGPGDIFGIRQSGDLEFQLADIYTDAVTLKKVSEDVNR 651

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
           +L QD +L     Q ++  L  +   +  + 
Sbjct: 652 LLEQDENLEQEENQELKKRLDRFLEEKYEKL 682


>gi|297584000|ref|YP_003699780.1| ATP-dependent DNA helicase RecG [Bacillus selenitireducens MLS10]
 gi|297142457|gb|ADH99214.1| ATP-dependent DNA helicase RecG [Bacillus selenitireducens MLS10]
          Length = 677

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 236/695 (33%), Positives = 376/695 (54%), Gaps = 27/695 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            P+S   G+G +Y   L  +           +DLL + P  + +      ++E      V
Sbjct: 3   QPVSAVSGIGPRYVEILESM------GIHTVMDLLTHFPFRYENH-EIQPLAEAEHNERV 55

Query: 71  TITGYISQHSSFQLQKRRPYKILLN---DGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           T+ G +      ++ K +  ++ +    DG   +  +FF +    +K       K+ V+G
Sbjct: 56  TVQGTVHSVPELRMFKGKKSRLTVRLLADGL-LVKAVFFNQ--PYMKKQISLNDKLIVSG 112

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLP 186
              K + +I       I    + +    +E VYS+   L  +  ++ I  A+   +  +P
Sbjct: 113 TFDKHRLQISGA----IVKAEEKIKRGGLEPVYSVKGDLKQNKMRQFIEAAVADFVEGVP 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK- 245
           E +   LL++    +   AF  +H P   KD  +   AR R+AY+ELL  Q+ +   R+ 
Sbjct: 169 ELLPDSLLERYQLLARNRAFYYLHFP---KDESFFLQARRRMAYEELLLFQLKMQWFRQT 225

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           + K E G   +   +     L ++PF  T +QE  + +IL D+    RM R+LQGDVGSG
Sbjct: 226 ERKAESGQQKSWSKEAFDSFLLSLPFKLTDAQERVLTEILTDLGGAERMNRLLQGDVGSG 285

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT++A  A+ A   +G Q  +M P  ILA+QH E +        + +  I+G+     +R
Sbjct: 286 KTVIAAAALYANYLSGFQGALMVPTEILAEQHSESLASLFNGMGMTIAHISGSSKTKEKR 345

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           +ALER+A G+  ++ GTHAL Q+ + ++KL LVI DEQHRFGV+QR  L  K   P VL 
Sbjct: 346 EALERLATGEVDLVTGTHALIQEGVSFHKLGLVITDEQHRFGVEQRRTLRNKGLRPDVLF 405

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +++ GD+D+S I + PAGRKPI+T     N +  V++ +   + +G +A
Sbjct: 406 MTATPIPRTLAISAFGDMDVSTIDQLPAGRKPIETHWGKRNMLPRVMQFIDREIEKGHQA 465

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           Y I P IEE +    ++ ++   S  E     S+ ++HGR+   +K++VM +F+    ++
Sbjct: 466 YVIAPLIEESEVLEVQNAIDLHKSFEEALPHRSVGLMHGRLHHEEKDAVMQAFQKNDVQI 525

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CILL  P  +   
Sbjct: 526 LVSTTVVEVGVNVPNATVMVIYDADRFGLAQLHQLRGRVGRGSDQSHCILLADPK-TDVG 584

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+S++  T DGF ++  DL+ R  GE  G++QSGMPKF +A       +LE ARKDA+
Sbjct: 585 KERMSIMTETTDGFELSRRDLEMRGPGEFFGVRQSGMPKFKVADLVEDYRILETARKDAR 644

Query: 665 HILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
            I+      +    + IR  L   + + AF+  R 
Sbjct: 645 TIIETGVLFSHESYREIRAAL---ERDPAFREERV 676


>gi|302332831|gb|ADL23024.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 686

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 215/658 (32%), Positives = 362/658 (55%), Gaps = 18/658 (2%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VTI G 
Sbjct: 16  LKGIGPKKIEVLQQL------NIHTVEDLVLYLPTRYEDNTVI-DLNQAEDQSNVTIEGQ 68

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           +          R   K+ ++     I +   +     LK      + ITV GK  ++K  
Sbjct: 69  VYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQE 128

Query: 136 IIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
           I      +    +Q+       +E VY +  G+     +  I +AL+ +  + EW+  +L
Sbjct: 129 ITGNRFFFNSQGTQNQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDV-TIHEWLTDEL 187

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIG 252
            +K    ++    N +H+P+  +D       R   A+ EL   ++ +  L R +   +  
Sbjct: 188 REKYKLETLDFTLNTLHHPKSKEDLLRA---RRTYAFTELFLFELRMQWLNRLEKSSDEA 244

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           I I+ +    +  +  +PF  T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I
Sbjct: 245 IEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAI 304

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M A   AG Q+ +M P  ILA+QH E +     ++   V ++TG++    R+  LE++ 
Sbjct: 305 CMYALKTAGYQSALMVPTEILAEQHAESLIALFGDSM-NVALLTGSVKGKKRKILLEQLE 363

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +G    +IGTHAL QD + ++ + LVI DEQHRFGV QR  L +K    +VL MTATPIP
Sbjct: 364 NGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIP 423

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY ICP I
Sbjct: 424 RTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLI 483

Query: 493 EEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E  +   + ++VV  + SL +++  S + ++HG++S  +K+ VM  F N    +L++TTV
Sbjct: 484 ESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTV 543

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR ++ S C+L+  P  ++    R+++
Sbjct: 544 VEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTI 602

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 603 MTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQ 660


>gi|330994822|ref|ZP_08318744.1| ATP-dependent DNA helicase recG [Gluconacetobacter sp. SXCC-1]
 gi|329758083|gb|EGG74605.1| ATP-dependent DNA helicase recG [Gluconacetobacter sp. SXCC-1]
          Length = 715

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 263/700 (37%), Positives = 412/700 (58%), Gaps = 26/700 (3%)

Query: 4   SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
             L PL A + + +GV    +  L+++     A   R IDLLF+ P S +DR YRP +  
Sbjct: 15  PLLAPLLAGVDSLKGVRPATARLLARV-----AGGARVIDLLFHLPESVVDRRYRPNLRT 69

Query: 64  ISEERIVTITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
               R+ T+   +S+    +    + RRP+++L++DGTG+  L+FF   +  L      G
Sbjct: 70  AETGRVCTLHVTVSRVVPPAPGGGRGRRPWRVLVSDGTGDAELVFF---SPHLVRRLEAG 126

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           + I V+G +++   R+ M HP Y+   ++    PL++ V+ L  GL     +  +  A  
Sbjct: 127 QDICVSGTLERFGERLNMAHPDYLVPAARMGEIPLLDPVWPLTAGLFSSQVRSAVRAAFD 186

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF-------EWTSPARERLAYDEL 233
             P LPEW +  +L+++ +P   +A   +H P    +          +  AR RLA D+L
Sbjct: 187 IFPPLPEWQDATVLRQRRWPGFEDALRTLHRPCDLPELMEGDALVAASERARARLACDDL 246

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           LA Q+A+   R+  +   G  +  +G + +  L      PT +Q  A+ +I  D++   +
Sbjct: 247 LAQQVAMAQARRLNRLRPGRAVAGDGSLRRVALSRFGHEPTTAQVRALAEIDADLAAPRQ 306

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVG+GKTLVAL AM  AVEAG QA +MAP  ILA+QH     K    + + V 
Sbjct: 307 MTRLLQGDVGAGKTLVALQAMLGAVEAGHQAALMAPTEILARQHLATFTKL---SPVPVA 363

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            ++G++    RR+AL RIA G A ++IGTHALFQ+S+ +  L L ++DEQHRFGV+QR  
Sbjct: 364 FLSGSVKGKARREALARIADGTARLVIGTHALFQESVVFQDLALAVIDEQHRFGVEQRAM 423

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L +K     VL+MTATPIPR+L+LT  GD+ +S++  KPAGRKP++T +  ++ +D+++ 
Sbjct: 424 LGEKGPQTDVLVMTATPIPRSLLLTQWGDMQVSRLDVKPAGRKPVRTSLHALSAMDDLLA 483

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
            ++  L+ G + +W+CP + E + ++  +   R  +L  HF + S+ + HG+     +E 
Sbjct: 484 GMERALARGARIFWVCPLVSESETTDIAAAEARHAALAAHFGAESVGLAHGQQDIALREQ 543

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            +  F  G  ++L+ATTVIEVG+D+ DA+++IIE+AE FGLAQLHQLRGRVGRG   S C
Sbjct: 544 AIADFAAGRTRILVATTVIEVGVDIPDATVMIIEHAERFGLAQLHQLRGRVGRGRAESYC 603

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LL+   L + +  RL++L+ TEDGFLIA+ED + R  G++ G +QSG+P   +A P   
Sbjct: 604 LLLHDSALGQTARRRLALLRETEDGFLIADEDFRLRGGGDVAGRRQSGLPDMRLASPLHV 663

Query: 653 DSLLEIARKDAKHILTQDPDLTSV----RGQSIRILLYLY 688
           D LL +A +DA+ ++   PD        R  ++ +LL L+
Sbjct: 664 DMLLTLAAQDARRLVDTPPDQRPPALRAREPAVSLLLELF 703


>gi|314933404|ref|ZP_07840769.1| ATP-dependent DNA helicase RecG [Staphylococcus caprae C87]
 gi|313653554|gb|EFS17311.1| ATP-dependent DNA helicase RecG [Staphylococcus caprae C87]
          Length = 682

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 214/659 (32%), Positives = 359/659 (54%), Gaps = 18/659 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VT+
Sbjct: 13  LDKIKGIGPKRLTILEEL------NINTVEDLVLYLPTRYEDNTVI-DLNQAEDQSTVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G +    +     R   K+ ++     I +   +     LK        +TV GK  + 
Sbjct: 66  QGEVYSTPAVAFFGRNKSKLTVHIMVNNIAVKCVFFNQPYLKKKIELHGTVTVKGKWNRA 125

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192
           K  I      +   + QD     +E VY +  G+     +  I +AL  +  + EW+  D
Sbjct: 126 KQEINGNRMFFNEQSPQDDVQ--LEPVYRIKEGIKQKQIRDNIRQALEDV-TIHEWLSDD 182

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEI 251
           L +K    ++      +H+P   KD +    AR   A+ EL   ++ +  L R +   + 
Sbjct: 183 LREKYKLETLEYTLRTLHHP---KDKQSLLKARRTYAFTELFMFELRMQWLNRLEKSSDE 239

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            I I+ +    ++ +  +PF  T +Q++++ +I +D+    RM R+LQGDVGSGKT+VA 
Sbjct: 240 AIEIDYDISKVKQFINRLPFELTDAQKASVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAA 299

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           I M A   AG Q+ +M P  ILA+QH E + +   +T   V ++TG++    RR  LE++
Sbjct: 300 ICMYALKTAGYQSALMVPTEILAEQHAESLMELFGDTM-NVALLTGSVKGKKRRILLEQL 358

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MTATPI
Sbjct: 359 ENGSIDCLIGTHALIQDDVVFENVGLVITDEQHRFGVNQRQMLREKGAMTNVLFMTATPI 418

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL ++  G++D+S I + P GRK I T      + ++V+ ++   L +G++AY ICP 
Sbjct: 419 PRTLAISVFGEMDVSSIKQLPKGRKSIITSWAKHEQYEQVLAQMTSELRKGRQAYVICPL 478

Query: 492 IEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           IE  +   + ++VV  + SL +++ +  + ++HG+++  +K+ VM  F +    +L++TT
Sbjct: 479 IESSEHLEDVQNVVALYESLQQYYGADKVGLLHGKLTPDEKDDVMQRFSDKEIDILVSTT 538

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R++
Sbjct: 539 VVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERMT 597

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           ++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 598 IMTQTSDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAELIQ 656


>gi|21282839|ref|NP_645927.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486066|ref|YP_043287.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|300912209|ref|ZP_07129652.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus TCH70]
 gi|38605354|sp|Q8NX11|RECG_STAAW RecName: Full=ATP-dependent DNA helicase recG
 gi|81649427|sp|Q6G9Y6|RECG_STAAS RecName: Full=ATP-dependent DNA helicase recG
 gi|21204278|dbj|BAB94975.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244509|emb|CAG42938.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|300886455|gb|EFK81657.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus TCH70]
          Length = 686

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 215/658 (32%), Positives = 360/658 (54%), Gaps = 18/658 (2%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VTI G 
Sbjct: 16  LKGIGPKKIEVLQQL------NIHTVEDLVLYLPTRYEDNTVI-DLNQAEDQSNVTIEGQ 68

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           +          R   K+ ++     I +   +     LK      + ITV GK  ++K  
Sbjct: 69  VYTAPVVAFFGRNNSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQE 128

Query: 136 IIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
           I      +    +Q        +E VY +  G+     +  I +AL+ +  + EW+  +L
Sbjct: 129 ITGNRVFFNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDV-TIHEWLTDEL 187

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIG 252
            +K    ++    N +H+P+  +D       R   A+ EL   ++ +  L R +   +  
Sbjct: 188 REKYKLETLDFTLNTLHHPKSKEDLLRA---RRTYAFTELFLFELRMQWLNRLEKSSDEA 244

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           I I+      +  +  +PF  T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I
Sbjct: 245 IEIDYGLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAI 304

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M A   AG Q+ +M P  ILA+QH E +     ++   V ++TG++    R+  LE++ 
Sbjct: 305 CMYALKTAGYQSALMVPTEILAEQHAESLMALFGDSM-NVALLTGSVKGKKRKILLEQLE 363

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +G    +IGTHAL QD + ++ + LVI DEQHRFGV QR  L +K    +VL MTATPIP
Sbjct: 364 NGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIP 423

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY ICP I
Sbjct: 424 RTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLI 483

Query: 493 EEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E  +   + ++VV  + SL +++  S + ++HG++S  +K+ VM  F N    +L++TTV
Sbjct: 484 ESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTV 543

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR ++ S C+L+  P  ++    R+++
Sbjct: 544 VEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTI 602

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 603 MTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQ 660


>gi|319764638|ref|YP_004128575.1| ATP-dependent DNA helicase recg [Alicycliphilus denitrificans BC]
 gi|317119199|gb|ADV01688.1| ATP-dependent DNA helicase RecG [Alicycliphilus denitrificans BC]
          Length = 705

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 235/681 (34%), Positives = 355/681 (52%), Gaps = 41/681 (6%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
             L K+        TR IDL  + P  + D      I    E   V + G ++  S  Q+
Sbjct: 20  KALEKL------GLTRDIDLALHLPLRYEDETRITPIRSAREGETVQVEGTVTA-SEIQM 72

Query: 85  QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
           + RR   + L DGTG   L FF       K     G ++   G+++       M+HP + 
Sbjct: 73  RPRRQLVVTLEDGTGSCELRFFSFYPSHQK-AMAVGERLRARGEVRGGFWGRQMLHPAFR 131

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK-------- 196
              ++      +  VY     L     ++ +  AL+R+  LPE +   L           
Sbjct: 132 --KAEGALPAALTPVYPTVAQLPQAYLRRAVASALARVD-LPETLPPGLEPPLARFDSEN 188

Query: 197 --KSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL---LMRKQF 247
                  + E+   +HNP          + + PA +RL  +ELLA Q++ L     R + 
Sbjct: 189 GLHRPWGLRESLLFLHNPAPDVALATLQDHSHPAWQRLKAEELLAQQLSQLVSKRERARL 248

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +     P      + +++L  +PFS T +Q    ++I +D+++   M R+LQGDVGSGKT
Sbjct: 249 RAPRLSPAPGAQALHEQLLAALPFSLTAAQRRVGEEIARDLARAVPMHRLLQGDVGSGKT 308

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT----QIIVEIITGNMPQAH 363
           +VA +A A  ++AG Q  +MAP  ILA+QH+  +  +           V  + G   +  
Sbjct: 309 VVAALAAARCMDAGWQCALMAPTEILAEQHFAKLIGWLAPLLAARGQQVAWLAGGQKKKE 368

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R   LERIA G A +++GTHA+ Q+ +++  L L ++DEQHRFGV QRL L QK      
Sbjct: 369 RAAMLERIASGGAALVVGTHAVIQEQVRFRNLALAVIDEQHRFGVAQRLALRQKLQHDGM 428

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH+L+M+ATPIPRTL ++   D+D+S I E P GR PI T +I  +R D+V+ER+   +
Sbjct: 429 EPHLLMMSATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDQVVERIGAQV 488

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           + G++ YW+CP IEE +  +  +       L E     ++ ++H RM   +K++VM+ FK
Sbjct: 489 AAGRQVYWVCPLIEESEALDLSNATATHADLSEALPGVTVGLLHSRMPSAEKKAVMEEFK 548

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY  
Sbjct: 549 SGRTGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYST 608

Query: 599 ----PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
                L + +  RL  +  T DGF IA  DL+ R  GE LG +QSG      A      +
Sbjct: 609 GDSGRLGETARDRLKAMAETTDGFEIARRDLEIRGPGEFLGARQSGDALLRFADLATDTA 668

Query: 655 LLEIARKDAKHILTQDPDLTS 675
           LLE AR  A  +L +   L +
Sbjct: 669 LLEWARAAAPQMLDRHAALAA 689


>gi|291531081|emb|CBK96666.1| ATP-dependent DNA helicase RecG [Eubacterium siraeum 70/3]
          Length = 677

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 239/673 (35%), Positives = 360/673 (53%), Gaps = 23/673 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS-EER 68
            +P+   +GVG+K +  L K+        T  + L  ++P  +ID +    IS++  +  
Sbjct: 9   DSPVCYIKGVGEKRAKLLEKL------GITTALQLAEHYPRGYIDFNETTAISDLVNDGE 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              +   +++       +   +K+L++DGTG++ + FF       +       +    GK
Sbjct: 63  NHVVKAIVTKKFPAYYGRINIFKVLVSDGTGDMLITFFNSDYSFTR--LKLDNEYCFYGK 120

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           +     R  M  P  +F +SQD N   +   YSL TG+S  +    I   L      PE 
Sbjct: 121 MAGDFLRKEMNSP--VFIDSQDPN--KLMPRYSLTTGISQGIMSNCIKNVLRDF-TFPEH 175

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   L++K S  S   A   IH P      E    A+ RL ++EL   Q+ L  M+ + K
Sbjct: 176 LTDTLMKKYSLISYDNALRWIHFPENK---EQYDKAKYRLTFEELFLLQLGLKSMKNRKK 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +  G P+  E K   +   ++PF+ T +Q  AI +   DM +   M R+LQGDVGSGKT 
Sbjct: 233 RLAGAPM--ENKSIDEYYSSLPFTLTGAQIRAISECCDDMQKSVPMNRLLQGDVGSGKTA 290

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA  A   A   G Q+ +MAP  ILA+QHY+ + K+     + + ++TG+   A +++  
Sbjct: 291 VAAGAAYFAYLNGYQSTLMAPTEILAKQHYDTLYKFLAPLGVTIALLTGSQTPAQKKQIR 350

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           + IA GQ  + +GT AL Q S ++  L LVI DEQHRFGV QR  L  K   PH+L+M+A
Sbjct: 351 QLIADGQIDVAVGTQALIQKSTRFSSLGLVITDEQHRFGVGQRAALGSKGNEPHILVMSA 410

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +   GD+DIS + E P GR PI+T  +  +  + + + +   ++ G +AY +
Sbjct: 411 TPIPRTLGMIIYGDLDISILDEMPKGRLPIRTYAVDTSYRERLYKFILKYVNNGFQAYIV 470

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP IEE   S   +  E  NSL     +++   ++HG+M   DK++VM  FK+   K+L+
Sbjct: 471 CPLIEEGI-SEKAAATEYINSLQNTCLANVPTGLLHGKMKQADKDAVMQDFKDNKLKVLV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT+VIEVG+DV +A +++IENAE FGL+QLHQLRGRVGRG E S CIL+     S  +  
Sbjct: 530 ATSVIEVGVDVPNAVVMVIENAEQFGLSQLHQLRGRVGRGTEQSHCILVTDNK-SDYTKQ 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+  +  T DGF IA EDLK R  G+  G KQ G+P+  IA       +L++  + A  I
Sbjct: 589 RMDTMVKTSDGFEIANEDLKLRGPGDFFGSKQHGLPQLKIADIYADLDILKMTGEAADDI 648

Query: 667 LTQDPDLTSVRGQ 679
           L  D  L   + +
Sbjct: 649 LRDDSRLEKPKNR 661


>gi|297208129|ref|ZP_06924560.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|296887372|gb|EFH26274.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus ATCC 51811]
          Length = 686

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 215/658 (32%), Positives = 360/658 (54%), Gaps = 18/658 (2%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VTI G 
Sbjct: 16  LKGIGPKKIEVLQQL------NIHTVEDLVLYLPTRYEDNTVI-DLNQAEDQSNVTIEGQ 68

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           +          R   K+ ++     I +   +     LK      + ITV GK  ++K  
Sbjct: 69  VYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQE 128

Query: 136 IIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
           I      +    +Q        +E VY +  G+     +  I +AL+ +  + EW+  +L
Sbjct: 129 ITGNRVFFNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDV-TIHEWLTDEL 187

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIG 252
            +K    ++    N +H+P+  +D       R   A+ EL   ++ +  L R +   +  
Sbjct: 188 REKYKLETLDFTLNTLHHPKSKEDLLRA---RRTYAFTELFLFELRMQWLNRLEKSSDEA 244

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           I I+      +  +  +PF  T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I
Sbjct: 245 IEIDYGLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAI 304

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M A   AG Q+ +M P  ILA+QH E +     ++   V ++TG++    R+  LE++ 
Sbjct: 305 CMYALKTAGYQSALMVPTEILAEQHAESLMALFGDSM-NVALLTGSVKGKKRKILLEQLE 363

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +G    +IGTHAL QD + ++ + LVI DEQHRFGV QR  L +K    +VL MTATPIP
Sbjct: 364 NGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIP 423

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY ICP I
Sbjct: 424 RTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLI 483

Query: 493 EEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E  +   + ++VV  + SL +++  S + ++HG++S  +K+ VM  F N    +L++TTV
Sbjct: 484 ESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTV 543

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR ++ S C+L+  P  ++    R+++
Sbjct: 544 VEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTI 602

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 603 MTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQ 660


>gi|192362473|ref|YP_001983944.1| ATP-dependent DNA helicase RecG [Cellvibrio japonicus Ueda107]
 gi|190688638|gb|ACE86316.1| ATP-dependent DNA helicase RecG [Cellvibrio japonicus Ueda107]
          Length = 712

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 253/682 (37%), Positives = 384/682 (56%), Gaps = 26/682 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +GVG   +  L+KI      +    + L +      +DR     I  +       
Sbjct: 23  PVNALKGVGATLAEKLAKIGLFSLQDLLLHLPLRY------LDRTRITPIGALQPNLNAV 76

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   + +     L KRR     + DGTG +TL F++      K     G ++ V G+ ++
Sbjct: 77  IEAEV-RACDIVLGKRRSLVCRVQDGTGTLTLRFYHFNNAQ-KQRLVAGARLRVFGETRR 134

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--E 187
               + M HP Y F            +  +Y    GL+    + +  +AL+ L   P  E
Sbjct: 135 GAAGLEMYHPEYDFLAGASPLPLEQTLTPIYPATEGLTQPRLRSLAQQALTWLDKHPLRE 194

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLM 243
            + + + ++ +  ++A+A   +H P    +     E   P ++RLA++ELLA  ++LLL+
Sbjct: 195 LLPETVRRRLNQCTLADALRYLHQPPVGANVQQLLEGEHPYQQRLAFEELLAHHLSLLLL 254

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R++ + +    + +   +    L+ + F  T++Q+  + +I +D+++   MLR++QGDVG
Sbjct: 255 RRETQADGAPRLRLTPALEHGFLKQLGFQLTRAQQRVVAEIAEDLAKPLPMLRLVQGDVG 314

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +A  AAV +G QA +MAP  ILA+QH     K+ +   I V  +TG +    
Sbjct: 315 SGKTVVAALAALAAVASGKQAAVMAPTEILAEQHRLNFGKWLEPLGIQVGWLTGRLKSGE 374

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---- 419
           RR  LE IA G A +++GTHALFQD++ +  L LVI+DEQHRFGV QRL L++K      
Sbjct: 375 RRYQLEMIAAGTAQVVVGTHALFQDAVAFADLGLVIIDEQHRFGVHQRLSLSEKGQVDGA 434

Query: 420 -----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                 PH L+MTATPIPRTL +++  D+D S I E P GR P+ TV+I  NR +EVIER
Sbjct: 435 LAGVVRPHQLIMTATPIPRTLAMSAYADLDCSVIDELPPGRTPVTTVVISDNRREEVIER 494

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +++   +G++AYW+C  IEE +    ++     +SL +      I ++HGR+   +KESV
Sbjct: 495 VRLACEQGRQAYWVCTLIEESEALEAQAAQATADSLAQSLPQLRIGLVHGRLKLAEKESV 554

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 555 MAGFKAGELDLLVATTVIEVGVDVANASLMIIENPERLGLAQLHQLRGRVGRGSAASHCV 614

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLS NS  RL V++ + DGF IAE+DL  R  GE+LG +Q+G  +F IA  +   
Sbjct: 615 LLYGSPLSNNSRERLRVMRESSDGFYIAEQDLLLRGPGEVLGTRQTGDMQFKIADLQRDS 674

Query: 654 SLLEIARKDAKHILTQDPDLTS 675
            LL   +  A  ++++ P ++ 
Sbjct: 675 HLLPDVKNAALLLMSEHPQVSQ 696


>gi|103487136|ref|YP_616697.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
 gi|98977213|gb|ABF53364.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
          Length = 701

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 282/704 (40%), Positives = 421/704 (59%), Gaps = 20/704 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  LNPLFA L+  +GVG + +  L+++         R +D+LF+ P+  I R    +
Sbjct: 14  MRPEILNPLFAALTDLKGVGPQLAKPLTRL------GLERLVDVLFHLPTGLISRIAVER 67

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFE 119
           + +    + + +   +  +       R P+ +   D  G+ + L++F R + + + +F  
Sbjct: 68  LDQAQPGQTIIVDLTVQDYRP-GRSPRAPFGVEAFDRAGDHVRLVYFGRTSGLARKLFPL 126

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V+G++    +   +VHP ++     +      E VY L  GL+     ++   AL
Sbjct: 127 GETRRVSGRLDLYGDMRQIVHPDHVAEPGDEGAIAEHEPVYPLTEGLTNARLSQLAAIAL 186

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH-NPRKAKDFEWTSPARERLAYDELLAGQI 238
            R P L EWI+  LL  +++P   EA    H NPR          AR+RLAYDE+ A Q+
Sbjct: 187 DRRPDLAEWIDAPLLASRNWPDWREAVARAHANPRDEA-------ARDRLAYDEIFANQV 239

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL+L+R+  +   G  I  +G++   +   +PF  T +QE   ++I  DM+Q   MLR+L
Sbjct: 240 ALMLIRQGLRNRRGRAIVGDGRLTGAL--RLPFGLTGAQERVGREIAGDMAQDTPMLRML 297

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVAL AM  AVEAG QA ++AP  ILA+QH+  ++       + + I+TG 
Sbjct: 298 QGDVGSGKTLVALRAMLTAVEAGTQAALLAPTEILARQHHATLRAMLAGLPVNLAILTGR 357

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R   L  +A G   I+IGTHA+FQ ++ Y  L LV+VDEQHRFGV QRL LTQKA
Sbjct: 358 DKGRVRESTLMGLADGSIDILIGTHAIFQQAVTYRDLALVVVDEQHRFGVAQRLMLTQKA 417

Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH+L+MTATPIPRTL+L + G++D+S+I E P GR P+ T ++ + R+DEVI  L+ 
Sbjct: 418 ARPPHLLVMTATPIPRTLLLANHGEMDVSRIDEMPPGRTPVDTRVVSVERLDEVIASLER 477

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L+ G +AYW+CP + E + S   +   R   L E   +  + ++HGRM   +K+ VM  
Sbjct: 478 HLATGAQAYWVCPLVAESEASELAAAEARAALLAERLGAARVGLVHGRMKGPEKDDVMAR 537

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F++G   +L+ATTVIEVG+DV  AS++++E+AEHFGLAQLHQLRGRVGRG   S C+LL 
Sbjct: 538 FQSGAIGVLVATTVIEVGVDVPAASLMVVEHAEHFGLAQLHQLRGRVGRGAAKSVCLLLR 597

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            P LS+ +  RL++++ T DGF+IAE DL+ R  GE+LG+KQSG   + +A PE    LL
Sbjct: 598 SPTLSETARERLALMRETNDGFVIAERDLELRGGGELLGLKQSGEADYRLASPEQLVRLL 657

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            +A  DA+  + +D  +   RG+++R+ LYL++ + A   +R+G
Sbjct: 658 PVAHDDARLFVERDGGMEGARGEAVRLCLYLFERDAAVPLLRSG 701


>gi|116514351|ref|YP_813257.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093666|gb|ABJ58819.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325126050|gb|ADY85380.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 679

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 226/676 (33%), Positives = 363/676 (53%), Gaps = 26/676 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            +F P++  +GVG K +  L  +            DLLFY P  + +      + ++ + 
Sbjct: 6   AIFRPVTALKGVGAKTAEALQSL------GIYSIYDLLFYFPYRYDELENL-PLDQLEDG 58

Query: 68  RIVTITGYISQHSS---FQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           + V + G ++ +     F   K R  +K+ ++     I + FF +    L      G++I
Sbjct: 59  QKVMLKGIVATNPYQNYFGYHKSRVSFKLRIDHD--IIMVNFFNQ--PWLTKQLSVGQEI 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182
            V GK    K  +      Y    +++ +   +  +YS+   +     + +I  A++  +
Sbjct: 115 AVYGKYDLRKQSLSA----YKLLANKNSDDG-MAPIYSINRQIKQKKLQTMIDLAIAESM 169

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             +   + +DL +     +  +    +H+P   KD      AR    + E    Q+ L L
Sbjct: 170 DEMGNAVPEDLRKHYRLMADQDLVIAMHHP---KDLAEAKEARRSAVFREFFLFQMQLAL 226

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M  Q K   G   + + +   K+ +++PF+ +  Q+  I +I  DM    +M R+LQGDV
Sbjct: 227 MSSQNKSHSGYAKHYDLEEIGKLTKSLPFALSPDQKKVINEIFADMFVDQQMQRLLQGDV 286

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA+ A+  AV AG QA +M P  ILA QHY  I    ++  + V ++TG+    
Sbjct: 287 GSGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTKTM 346

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            RR+  + +A G  +++IGTHAL Q+ + + KL LVI+DEQHRFGV QRL L  K   P 
Sbjct: 347 ERREIYKELADGSINVVIGTHALIQEQVAFKKLGLVIIDEQHRFGVVQRLALINKGDRPD 406

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L MTATPIPR+L LT  GD  +S+I   PAGRKPIK+     +++DEV   ++  L+EG
Sbjct: 407 ILAMTATPIPRSLALTVYGDTALSEIRHLPAGRKPIKSYWKTSSQLDEVYSLMRQQLAEG 466

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGT 541
            + Y + P I E +  +  +     + L   F    + ++HG+M+  DKE +MD F  G 
Sbjct: 467 FQIYAVTPLISESEMIDLENAEALHDRLAGEFPDQEVVLLHGKMAAADKEQIMDRFAAGE 526

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ T+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG+  S C+ L  P  +
Sbjct: 527 VDILVTTSVIEVGVDVANANLMVIFDADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-T 585

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F          ++ +AR 
Sbjct: 586 EAGKQRMKIVAETNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRTGSVVSDYQVMVVARD 645

Query: 662 DAKHILTQDPDLTSVR 677
           +AK I+  DPDL + +
Sbjct: 646 EAKRIVQADPDLKAEK 661


>gi|300703084|ref|YP_003744686.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957]
 gi|299070747|emb|CBJ42042.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957]
          Length = 738

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 248/703 (35%), Positives = 372/703 (52%), Gaps = 44/703 (6%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI----SEERIVTITGYISQH 79
           +  L+K+         R +DL+ + P  + D      I+E     +      + G +++ 
Sbjct: 53  ADKLAKL------GLRRDVDLVLHLPMRYEDETTLLTIAEAIARANTGWAAQVEGAVTR- 105

Query: 80  SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           +   L+ RR   + + D +GE+ L F       +K +  EG ++ V G+++       MV
Sbjct: 106 NEVALRPRRQLVVYIADDSGELVLRFLNFYGSQVKQM-AEGVRLRVRGEVRGGFFGAEMV 164

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQ 195
           HP        +     +  VY    G++    +K I+ AL R P LPE +   L    L 
Sbjct: 165 HPTVRPVAPDEPLPDRLTPVYPSTAGVAQAYLRKAILNALGRTP-LPETLPDSLMRGPLA 223

Query: 196 KKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
                + AEA  ++H P    D     E T PA  R+ +DELLA Q++L   +   +   
Sbjct: 224 PLKLMAPAEAVRLLHQPTPDVDEHSLIERTHPAWLRIKFDELLAQQLSLKRAQAARRTRS 283

Query: 252 GIPINVEGKI--AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
              +   G      + +  +PF  T +Q    ++I  D+++   M R+LQGDVGSGKT++
Sbjct: 284 APVLRAGGADGLLARFMAALPFKLTGAQARVWEEIRADLARPYPMQRLLQGDVGSGKTVI 343

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A +A   A++AG QA +MAP  +LA+QHY  +  + +   + +  + G++ +  + +A  
Sbjct: 344 AALAACQAIDAGRQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAA 403

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------- 418
           R+A G A ++IGTHAL QDS+ + +L L +VDEQHRFGV QRL L  KA           
Sbjct: 404 RVAAGAAQLVIGTHALIQDSVTFARLGLAVVDEQHRFGVAQRLALRGKAGGADAPVAETA 463

Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+M+ATPIPRTL +T   D+D+S I E P GR P+ T ++   R DEVIER+  
Sbjct: 464 QPVPHQLMMSATPIPRTLAMTYYADLDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHA 523

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
              EG++ YW+CP IEE +    ++ VE F +L +      + ++HGR+   DK +VM +
Sbjct: 524 AAREGRQVYWVCPLIEESEALQLQTAVETFETLSQSLAGLKVGLVHGRLPSADKAAVMSA 583

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   +L+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S CILLY
Sbjct: 584 FAGGELHVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLY 643

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLS  +  RL  ++ T DGF IA  DL  R  GE LG +QSG      A       ++
Sbjct: 644 QAPLSPTAKQRLQTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLNHDAWMV 703

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           E A+  A+ +L + P+  +V     R L       E   ++R 
Sbjct: 704 EFAQGAAEQMLARFPE--AVEAHLKRWL------GEREHYLRV 738


>gi|104774262|ref|YP_619242.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423343|emb|CAI98190.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 679

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 226/676 (33%), Positives = 363/676 (53%), Gaps = 26/676 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            +F P++  +GVG K +  L  +            DLLFY P  + +      + ++ + 
Sbjct: 6   AIFRPVTALKGVGAKTAEALQSL------GIYSIYDLLFYFPYRYDELENL-PLDQLEDG 58

Query: 68  RIVTITGYISQHSS---FQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           + V + G ++ +     F   K R  +K+ ++     I + FF +    L      G++I
Sbjct: 59  QKVMLKGIVATNPYQNYFGYHKSRVSFKLRIDHD--IIMVNFFNQ--PWLTKQLSVGQEI 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-L 182
            V GK    K  +      Y    +++ +   +  +YS+   +     + +I  A++  +
Sbjct: 115 AVYGKYDLRKQSLSA----YKLLANKNSDDG-MAPIYSINRQIKQKKLQTMIDLAIAESM 169

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             +   + +DL +     +  +    +H+P   KD      AR    + E    Q+ L L
Sbjct: 170 DEMGNAVPEDLRKHYRLMADQDLVIAMHHP---KDLAEAKEARRSAVFREFFLFQMQLAL 226

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M  Q K   G   + + +   K+ +++PF+ +  Q+  I +I  DM    +M R+LQGDV
Sbjct: 227 MSSQNKSHSGYAKHYDLEEIGKLTKSLPFALSPDQKKVINEIFADMFVDQQMQRLLQGDV 286

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA+ A+  AV AG QA +M P  ILA QHY  I    ++  + V ++TG+    
Sbjct: 287 GSGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTKTM 346

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            RR+  + +A G  +++IGTHAL Q+ + + KL LVI+DEQHRFGV QRL L  K   P 
Sbjct: 347 ERREIYKELADGSINVVIGTHALIQEQVAFKKLGLVIIDEQHRFGVVQRLALINKGDRPD 406

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L MTATPIPR+L LT  GD  +S+I   PAGRKPIK+     +++DEV   ++  L+EG
Sbjct: 407 ILAMTATPIPRSLALTVYGDTALSEIRHLPAGRKPIKSYWKTSSQLDEVYSLMRQQLAEG 466

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGT 541
            + Y + P I E +  +  +     + L   F    + ++HG+M+  DKE +MD F  G 
Sbjct: 467 FQIYAVTPLISESEMIDLENAEALHDRLAGEFPDQEVVLLHGKMAAADKEQIMDRFAAGE 526

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ T+VIEVG+DV +A++++I +A+ FGL+QLHQLRGR+GRG+  S C+ L  P  +
Sbjct: 527 VDILVTTSVIEVGVDVANANLMVIFDADRFGLSQLHQLRGRIGRGQTQSYCVFLADPK-T 585

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T DGF +AEEDLK R EG++ G  QSG+P+F          ++ +AR 
Sbjct: 586 EAGKQRMKIVAETNDGFKLAEEDLKMRGEGDLFGKAQSGLPEFRTGSVVSDYQVMVVARD 645

Query: 662 DAKHILTQDPDLTSVR 677
           +AK I+  DPDL + +
Sbjct: 646 EAKRIVQADPDLKTEK 661


>gi|187922703|ref|YP_001894345.1| ATP-dependent DNA helicase RecG [Burkholderia phytofirmans PsJN]
 gi|187713897|gb|ACD15121.1| ATP-dependent DNA helicase RecG [Burkholderia phytofirmans PsJN]
          Length = 832

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 247/676 (36%), Positives = 370/676 (54%), Gaps = 33/676 (4%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
           +K +  L+K+        TR IDL+ + P  + D      I  +    I    G +   +
Sbjct: 147 EKTADKLAKL------GLTRDIDLVLHLPMRYEDETSLTPIGHLLPGGISQTEGVVFD-N 199

Query: 81  SFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
               + RR   + L D  G E+ L F       +K +   G ++ V G ++     + MV
Sbjct: 200 EIAYRPRRQLLVKLRDDAGDELVLRFLNFYGSQVKQM-AIGARLRVRGDVRGGFFGMEMV 258

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQ 195
           HP     +        +  VY    G++    +K I  ALSR   LPE + + +    + 
Sbjct: 259 HPAVRVVDEDTPLPQALTPVYPSTAGVTQAYLRKSIDNALSRTS-LPELLPEAVARTFMA 317

Query: 196 KKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
               PS+ +A   +H+P    D     + T PA  R+ ++ELLA Q++L     + +   
Sbjct: 318 PLGVPSLMDAVRTLHHPGVQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHDERRTRA 377

Query: 252 GIPINV-----EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
              +       E  +  ++L+ +PFS T +QE    +I  D++Q + M R+LQGDVGSGK
Sbjct: 378 APAMPRRKLGDEAALVARLLKALPFSLTAAQERVGGEIALDLTQPHPMQRLLQGDVGSGK 437

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R 
Sbjct: 438 TIVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTREKRA 497

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT------- 419
           A+E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV QRL L  KA        
Sbjct: 498 AIEAAALGTAQLVIGTHAIIQDAVEFARLGLVIVDEQHRFGVAQRLALRAKAQNAADGAR 557

Query: 420 --APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R +EVI R++ 
Sbjct: 558 DFQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVRE 617

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
               G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+
Sbjct: 618 AALTGRQVYWVCPLIEESETLQLQTAVETYETLVAALPELKVGLVHGRLAPAEKAAVMDA 677

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F     +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY
Sbjct: 678 FTRNEVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLY 737

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLS  +  RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  +    L+
Sbjct: 738 TGPLSMTARARLQTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLQNDQWLI 797

Query: 657 EIARKDAKHILTQDPD 672
           E AR+ A  +L + P+
Sbjct: 798 EPAREAAAVLLEKYPE 813


>gi|299065737|emb|CBJ36913.1| ATP-dependent DNA helicase [Ralstonia solanacearum CMR15]
          Length = 730

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 247/703 (35%), Positives = 370/703 (52%), Gaps = 44/703 (6%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE----ERIVTITGYISQH 79
           +  L+K+         R +DL+ + P  + D      I+E            + G +++ 
Sbjct: 45  ADKLAKL------GLRRDVDLVLHLPMRYEDETALLTIAEAVARANTGWAAQVDGVVTR- 97

Query: 80  SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           +    + RR   + + D +GE+ L F       +K +  EG ++ V G+++       MV
Sbjct: 98  NEVAFRPRRQLVVHIADDSGELVLRFLNFYGSQVKQM-AEGARLRVRGEVRGGFFGAEMV 156

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ---- 195
           HP        +     +  VY    G++    +K I+ AL R P LPE +   LL+    
Sbjct: 157 HPAVRAVAPDEPLPDRLTPVYPSTAGVAQAYLRKAILNALGRTP-LPETLPDSLLRGPLA 215

Query: 196 KKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
                + AEA  ++H P    D     E T PA  R+ +DELLA Q++L   +   +   
Sbjct: 216 SLKLMAPAEAVRLLHQPTPDVDEYSLVERTHPAWLRIKFDELLAQQLSLKRAQAARRTRS 275

Query: 252 GIPINVEGKI--AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
              +   G      + +  +PF  T +Q    ++I  D+++   M R+LQGDVGSGKT++
Sbjct: 276 APVLRAGGADGLLARFMAALPFKLTGAQARVWEEIRVDLARPYPMQRLLQGDVGSGKTVI 335

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A +A   A++AG QA +MAP  +LA+QHY  +  +     + +  + G++ +  + +A  
Sbjct: 336 AALAACQAIDAGRQAALMAPTELLAEQHYRKLSAWLAPLGVDIVWLAGSLKRKQKDEAAA 395

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------- 419
           R+A G A ++IGTHAL QD++ + +L L +VDEQHRFGV QRL L  KA           
Sbjct: 396 RVAAGTAQLVIGTHALIQDTVTFARLGLAVVDEQHRFGVAQRLALRGKAGGTDTPIAETA 455

Query: 420 --APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+M+ATPIPRTL +T   D+D+S I E P GR P+ T ++   R DEVIER+  
Sbjct: 456 QLVPHQLMMSATPIPRTLAMTYYADLDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHA 515

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
              EG++ YW+CP IEE +    ++ VE F +L +      + ++HGR+   DK +VM +
Sbjct: 516 AAREGRQVYWVCPLIEESEALQLQTAVETFETLSQSLAGLKVGLVHGRLPSADKAAVMSA 575

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   +L+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S CILLY
Sbjct: 576 FAGGELHVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLY 635

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLS  +  RL  ++ T DGF IA  DL  R  GE LG +QSG      A       ++
Sbjct: 636 QAPLSPTAKQRLQTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLNHDAWMV 695

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           E A+  A+ +L + PD  +V     R L       E   ++R 
Sbjct: 696 EFAQGAAEQMLARFPD--AVEAHLKRWL------GEREHYLRV 730


>gi|315658488|ref|ZP_07911360.1| DNA helicase RecG [Staphylococcus lugdunensis M23590]
 gi|315496817|gb|EFU85140.1| DNA helicase RecG [Staphylococcus lugdunensis M23590]
          Length = 681

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 223/660 (33%), Positives = 367/660 (55%), Gaps = 19/660 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS  +G+G K    L+++      N     DL+ Y P+ + D      +S   ++ +VT
Sbjct: 12  PLSHIKGLGPKRIAILNEL------NIYSVGDLVLYLPTRYEDNT-VVDLSTAEDQTMVT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +     R   K+ ++     I +   +     LKN     +++TV GK  +
Sbjct: 65  VEGEVYSMPTVAFFGRNKSKLTIHLMINNIAVKCVFFNQPYLKNKIALNQRVTVKGKWNR 124

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
            K  I      +   +S+      +E +Y +  G+     + +I EAL  +  + EW+ +
Sbjct: 125 AKQEINGNRMFFNQSSSKQDE---LEPIYRIKDGIKQKNMRDMIREALRDV-TIHEWLSE 180

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKE 250
           DL  K    S+     I+H+P   KD      AR   A+ EL   ++ +  L R +   +
Sbjct: 181 DLKAKYKLESLESTIKILHHP---KDKAALLRARRTYAFTELFMFELRMQWLNRLEKAAD 237

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             I IN + +  +  +  +PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT+VA
Sbjct: 238 NAIEINYDLRQVKDFIDVLPFDLTDAQKQSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVA 297

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            I M A   AG Q+ +M P  ILA+QH E + K     ++ V ++TG++    R+  LE+
Sbjct: 298 AICMYALKTAGYQSALMVPTEILAEQHAESLVKLFGE-RMNVALLTGSVKGKKRQLLLEQ 356

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           +A G    +IGTHAL Q+ +Q+  + LVI DEQHRFGV QR  L +K    +VL MTATP
Sbjct: 357 LAQGTIDCVIGTHALIQEDVQFNNIGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATP 416

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL ++  G++D+S I + P GRKPIKT      + ++V+ ++   L +G++AY ICP
Sbjct: 417 IPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYEQVLHQMTSELQKGRQAYVICP 476

Query: 491 QIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            IE  +   + ++VV  + SL  ++ +  + ++HG++S  DK+ VM+ F      +L++T
Sbjct: 477 LIESSEHLEDVQNVVAIYESLQHYYGAKRVGLLHGKLSTEDKDDVMNQFSCHQIDILVST 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R+
Sbjct: 537 TVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERM 595

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +++  T DGF ++E DL+ R  G+  G+KQSG+P F++A       +LE+AR +A  ++ 
Sbjct: 596 TIMTQTNDGFELSERDLEMRGPGDFFGVKQSGLPDFMVANVVEDYRMLEVARDEASELIQ 655


>gi|330826895|ref|YP_004390198.1| ATP-dependent DNA helicase RecG [Alicycliphilus denitrificans K601]
 gi|329312267|gb|AEB86682.1| ATP-dependent DNA helicase RecG [Alicycliphilus denitrificans K601]
          Length = 705

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 235/681 (34%), Positives = 355/681 (52%), Gaps = 41/681 (6%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
             L K+        TR IDL  + P  + D      I    E   V + G ++  S  Q+
Sbjct: 20  KALEKL------GLTRDIDLALHLPLRYEDETRITPIRSAREGETVQVEGTVTA-SEIQM 72

Query: 85  QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
           + RR   + L DGTG   L FF       K     G ++   G+++       M+HP + 
Sbjct: 73  RPRRQLVVTLEDGTGSCELRFFSFYPSHQK-AMAVGERLRARGEVRGGFWGRQMLHPAFR 131

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK-------- 196
              ++      +  VY     L     ++ +  AL+R+  LPE +   L           
Sbjct: 132 --KAEGALPAALTPVYPTVAQLPQAYLRRAVASALARVD-LPETLPPGLEPPLARFDSEN 188

Query: 197 --KSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALL---LMRKQF 247
                  + E+   +HNP          + + PA +RL  +ELLA Q++ L     R + 
Sbjct: 189 GLHRPWGLRESLLFLHNPAPDVALATLQDHSHPAWQRLKAEELLAQQLSQLVSKRERARL 248

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +     P      + +++L  +PFS T +Q    ++I +D+++   M R+LQGDVGSGKT
Sbjct: 249 RAPRLSPAPGAQALHEQLLAALPFSLTAAQRRVGEEIARDLARAVPMHRLLQGDVGSGKT 308

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT----QIIVEIITGNMPQAH 363
           +VA +A A  ++AG Q  +MAP  ILA+QH+  +  +           V  + G   +  
Sbjct: 309 VVAALAAARCMDAGWQCALMAPTEILAEQHFAKLIGWLAPLLAARGRQVAWLAGGQKKKE 368

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--- 420
           R   LERIA G A +++GTHA+ Q+ +++  L L ++DEQHRFGV QRL L QK      
Sbjct: 369 RAAMLERIASGGAALVVGTHAVIQEQVRFRNLALAVIDEQHRFGVAQRLALRQKLQHDGM 428

Query: 421 -PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH+L+M+ATPIPRTL ++   D+D+S I E P GR PI T +I  +R D+V+ER+   +
Sbjct: 429 EPHLLMMSATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDQVVERIGAQV 488

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           + G++ YW+CP IEE +  +  +       L E     ++ ++H RM   +K++VM+ FK
Sbjct: 489 AAGRQVYWVCPLIEESEALDLSNATATHADLSEALPGVTVGLLHSRMPSAEKKAVMEEFK 548

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY  
Sbjct: 549 SGRMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYST 608

Query: 599 ----PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
                L + +  RL  +  T DGF IA  DL+ R  GE LG +QSG      A      +
Sbjct: 609 GDSGRLGETARDRLKAMAETTDGFEIARRDLEIRGPGEFLGARQSGDALLRFADLATDTA 668

Query: 655 LLEIARKDAKHILTQDPDLTS 675
           LLE AR  A  +L +   L +
Sbjct: 669 LLEWARAAAPQMLDRHAALAA 689


>gi|224476339|ref|YP_002633945.1| ATP-dependent DNA helicase RecG [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420946|emb|CAL27760.1| putative ATP-dependent DNA helicase RecG [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 685

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 221/668 (33%), Positives = 362/668 (54%), Gaps = 19/668 (2%)

Query: 7   NPLFAP--LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           N +  P  L   +G+G K    L+++      N     DL+ Y P  + D      ++E 
Sbjct: 5   NLIDQPYALEQIKGLGPKRIAVLNEL------NIYNVEDLVLYLPVRYEDNS-IVDLNEA 57

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            ++  VT+TG +    +     R   K+ ++     I +   +     LK        +T
Sbjct: 58  EDQSTVTVTGEVYSTPTVAFFGRNRSKVTVHLMINNIAVKAVFFNQPYLKKKINLHDHVT 117

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNS-QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           V GK  + K  I  +          Q+ +   ++ VY +  G+     + II + L  + 
Sbjct: 118 VKGKWNRAKQEINGMRMFTTGSEDLQNADGEQLDPVYRIKEGIKQKTMRDIIRKVLDDIE 177

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-L 242
            + EW+  DL +K    S+A     +H     K+      AR   A+ EL   ++ +  L
Sbjct: 178 -IREWLSDDLREKYKLESLATTIRALHYADNKKEL---LKARRTYAFTELFLFELRMQWL 233

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            R +   +  I IN +    +K + ++PF  T +Q+ ++ +I +D+    RM R+LQGDV
Sbjct: 234 NRLEKASDEAIEINYDLAEVKKFIDDLPFELTDAQKHSVNEIFRDLKAPLRMHRLLQGDV 293

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA + M A   AG Q+ +M P  ILA+QH E + +   + ++ V ++TG++   
Sbjct: 294 GSGKTVVAALCMFALKTAGYQSALMVPTEILAEQHAESLTELFGD-RMNVALLTGSVKGK 352

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R+  LE++ +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +
Sbjct: 353 KRKLLLEQLENGTIDCLIGTHALIQDDVSFQNVGLVITDEQHRFGVNQRQALREKGAMTN 412

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL ++  G++D+S I + P GRKPIKT+     + D V+ ++   L +G
Sbjct: 413 VLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIKTMWAKHEQYDTVLNQMTSELEKG 472

Query: 483 KKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           ++AY ICP IE  +   + ++VV  + SL EH+ +  + ++HG+M   +K+ VM  F   
Sbjct: 473 RQAYVICPLIESSEHLEDVQNVVALYESLEEHYGAGRVGLLHGKMPADEKDDVMQRFNRH 532

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTV+EVG++V +A+ +II +A+ FGL+ LHQLRGRVGR +  S C+L+  P  
Sbjct: 533 EIDILVSTTVVEVGVNVPNATFMIIYDADRFGLSTLHQLRGRVGRSDHQSYCVLIASPK- 591

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    R++++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR
Sbjct: 592 TETGIERMNIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANIVEDYRMLEVAR 651

Query: 661 KDAKHILT 668
            +A  ++ 
Sbjct: 652 DEAGELIQ 659


>gi|329905130|ref|ZP_08274049.1| ATP-dependent DNA helicase RecG [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547690|gb|EGF32475.1| ATP-dependent DNA helicase RecG [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 699

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 254/682 (37%), Positives = 368/682 (53%), Gaps = 29/682 (4%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS--EERIVTITGYISQ 78
           KK    L+++           +DL+ + P  + D      I + S    + V + G I+ 
Sbjct: 20  KKTEDKLARL------GLRTDMDLVLHLPMRYEDETRIVLIRDASFMGGQSVQVEGMITA 73

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
               Q + RR   + L D TG++TL F       LK +  EG ++   G+++       M
Sbjct: 74  C-EVQYKPRRQLVVTLADETGQVTLRFLNFYGSQLKQM-AEGNRVRARGELRHGFFGPEM 131

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           VHP Y            +  VY    GL     +K I  A++R+    + +   L++   
Sbjct: 132 VHPLYKMVLEGAPLPMALTPVYPSGDGLPQTYLRKAIASAMARIS-WRDTLAPALVESLD 190

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
             S   A  ++HNP    D     + + PA  R+ +DELLA Q++L   +   + +   P
Sbjct: 191 LMSFEAAVRLLHNPPPEVDESALEDRSHPAWVRMKFDELLAQQLSLKRAQVARRAKGAAP 250

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + V G ++    R +PF+ T +Q+  +  I  D+     M R+LQGDVGSGKT+VA +A 
Sbjct: 251 LPVIGALSLAFQRVLPFALTGAQQRVLDQIRHDLQAPFPMQRLLQGDVGSGKTVVAALAA 310

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           A A+++G QAV+MAP  ILA QH+  I  + +   I V  +TG++ +  +  A ERI  G
Sbjct: 311 AQAIDSGFQAVLMAPTEILADQHFRKIAGWLEPLGIEVVWLTGSLKKKDKLAAKERIEAG 370

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-----------TAPHV 423
            A ++IGTHAL QD + + +L LVIVDEQHRFGV QRL L  K              PH 
Sbjct: 371 TAQLVIGTHALIQDDVVFARLGLVIVDEQHRFGVGQRLTLRNKGLGLSNGIDPTQIVPHQ 430

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL +T   D+++S I E P GR PI T +I  NR DEVIER+ V   EG+
Sbjct: 431 LMMSATPIPRTLAMTYYADLEVSVIDELPPGRTPIVTRVIDQNRRDEVIERVHVAALEGR 490

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           +AYW+CP IEE +    ++  +   +L        + ++HGR+   +K++VMD+F     
Sbjct: 491 QAYWVCPLIEESEALQLQTATDTHATLSAALPDLQVGLVHGRLKPQEKQAVMDAFTRAEI 550

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+ATTVIEVG+DV +AS+++IE+AE  GL+QLHQLRGRVGRG   S C+LLY  PL +
Sbjct: 551 QVLVATTVIEVGVDVPNASLMVIEHAERSGLSQLHQLRGRVGRGSAASVCLLLYQSPLGQ 610

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  
Sbjct: 611 VAKQRLGTMRETTDGFEIARRDLQIRGPGEFLGARQSGQAMLRFADLETDQWLVEQARTV 670

Query: 663 AKHILTQDPDLTSVRGQSIRIL 684
           A  +L  DP   +V     R L
Sbjct: 671 AIDLLRDDP--ATVEMHLARWL 690


>gi|161509398|ref|YP_001575057.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|160368207|gb|ABX29178.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
          Length = 686

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 215/658 (32%), Positives = 361/658 (54%), Gaps = 18/658 (2%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VTI G 
Sbjct: 16  LKGIGPKKIEVLQQL------NIHTVEDLVLYLPTRYEDNTVI-DLNQAEDQSNVTIEGQ 68

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           +          R   K+ ++     I +   +     LK      + ITV GK  ++K  
Sbjct: 69  VYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQE 128

Query: 136 IIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
           I      +    +Q        +E VY +  G+     +  I +AL+ +  + EW+  +L
Sbjct: 129 ITGNRVFFNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDV-TIHEWLTDEL 187

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIG 252
            +K    ++    N +H+P+  +D       R   A+ EL   ++ +  L R +   +  
Sbjct: 188 REKYKLETLDFTLNTLHHPKSKEDLLRA---RRTYAFTELFLFELRMQWLNRLEKSSDEA 244

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           I I+ +    +  +  +PF  T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I
Sbjct: 245 IEIDYDIDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAI 304

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M A   AG Q+ +M P  ILA+QH E +     ++   V ++TG++    R+  LE++ 
Sbjct: 305 CMYALKTAGYQSALMVPTEILAEQHAESLMALFGDSM-NVALLTGSVKGKKRKILLEQLE 363

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +G    +IGTHAL QD + ++ + LVI DEQHRFGV QR  L +K    +VL MTATPIP
Sbjct: 364 NGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIP 423

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY ICP I
Sbjct: 424 RTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLI 483

Query: 493 EEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E  +   + ++VV  + SL +++  S + ++HG++S  +K+ VM  F N    +L++TTV
Sbjct: 484 ESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEINVLVSTTV 543

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR ++ S C+L+  P  ++    R+++
Sbjct: 544 VEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTI 602

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 603 MTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEGYRMLEVARDEAAELIQ 660


>gi|283470439|emb|CAQ49650.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 686

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 216/658 (32%), Positives = 360/658 (54%), Gaps = 18/658 (2%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VTI G 
Sbjct: 16  LKGIGPKKIEVLQQL------NIHTVEDLVLYLPTRYEDNTVI-DLNQAEDQSNVTIEGQ 68

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           +          R   K+ ++     I +   +     LK      + ITV GK  ++K  
Sbjct: 69  VYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQE 128

Query: 136 IIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
           I      +    +Q        +E VY +  G+     +  I +AL+ +  + EW+   L
Sbjct: 129 ITGNRVFFSSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDV-TIHEWLTDGL 187

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIG 252
            +K    ++    N +H+P+     E    AR   A+ EL   ++ +  L R +   +  
Sbjct: 188 REKYKLETLDFTLNTLHHPKSK---EGLLRARRTYAFTELFLFELRMQWLNRLEKSSDEA 244

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           I I+ +    +  +  +PF  T++Q+S++ +I +D+    RM R+LQGDVGSGKT+VA I
Sbjct: 245 IEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAI 304

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            M A   AG Q+ +M P  ILA+QH E +     ++   V ++TG++    R+  LE++ 
Sbjct: 305 CMYALKTAGYQSALMVPTEILAEQHAESLIALFGDSM-NVALLTGSVKGKKRKILLEQLE 363

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +G    +IGTHAL QD + ++ + LVI DEQHRFGV QR  L +K    +VL MTATPIP
Sbjct: 364 NGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIP 423

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY ICP I
Sbjct: 424 RTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLI 483

Query: 493 EEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E  +   + ++VV  + SL +++  S + ++HG++S  +K+ VM  F N    +L++TTV
Sbjct: 484 ESSEHLEDVQNVVALYESLQQNYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTV 543

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR ++ S C+L+  P  ++    R+++
Sbjct: 544 VEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIERMTI 602

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 603 MTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQ 660


>gi|189345929|ref|YP_001942458.1| ATP-dependent DNA helicase RecG [Chlorobium limicola DSM 245]
 gi|189340076|gb|ACD89479.1| ATP-dependent DNA helicase RecG [Chlorobium limicola DSM 245]
          Length = 706

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 247/714 (34%), Positives = 379/714 (53%), Gaps = 36/714 (5%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           + L+T +GVG K +  L +      A      +L  Y P  ++DR    +I E+     V
Sbjct: 5   SSLTTLKGVGPKRATILEQ------AGIATPENLFDYFPRRYLDRRTIRRIGELRAGEAV 58

Query: 71  TITGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           T+ G + Q      Q  R  +K++L DGTG I L +F +      +    G  + V GK+
Sbjct: 59  TVVGTVLQARLEGTQPGRMRFKVVLADGTGSIELTWF-KGVRYFASSVAPGDALAVNGKV 117

Query: 130 KKLKNRIIMVHPHYI-------------FHNSQDVNFPLIEAVYSLPT-----GLSVDLF 171
                ++ M HP +                + +  +   I  +Y +       GL     
Sbjct: 118 GVFGRQMQMQHPDFEHLSRTSVHENQEGGSDYELFHTGRIIPLYPVSAAMKQGGLHSRQL 177

Query: 172 KKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
           + II  A  R P    E +   ++++     +AEA+  +H P   +  E     R R+ +
Sbjct: 178 RTIIAGAFERFPPGRDENLTPGIIREYGLLPLAEAYREMHFPSSPEKLEEA---RTRMKW 234

Query: 231 DELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
            EL   Q+   L     ++    P     G++ ++    +PF+ T +Q+  I++I +D+ 
Sbjct: 235 TELFYTQLLFALKHAHLERNHSAPCFTHSGEVTRRFYAGLPFALTDAQKQVIREIYRDLK 294

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           +   M R+LQGDVGSGKT+VA+ +MA A + G Q+  MAP  ILA QH+  +K+      
Sbjct: 295 RARPMNRLLQGDVGSGKTMVAMFSMALAADNGLQSAFMAPTEILAVQHFLSLKRSLHPLG 354

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           I V ++ G   +  R  AL  +A G   + +GTHA+ +  + + +L LVI+DEQHRFGV 
Sbjct: 355 IDVALLAGRQRKKEREAALSGLADGSLTVAVGTHAMIEKGVSFSRLGLVIIDEQHRFGVL 414

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR  L  KA +PHVLLMTATPIPRTL +   GD+D+S I   PAGR PI+T ++  +  +
Sbjct: 415 QRKALQDKAASPHVLLMTATPIPRTLTMAGFGDLDVSVIDAMPAGRVPIRTQLVSEHSKN 474

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE--HFTSSIAIIHGRMSD 527
            V E L+  ++ G++AY + P +EE ++ + R+ VE +  L         + +IHG+M+ 
Sbjct: 475 RVYELLRREVASGRQAYIVYPLVEESEKIDLRAAVESYGELAATTLGDLRLGLIHGQMTP 534

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +KES MD F+ G   +L+ TTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVGRG 
Sbjct: 535 EEKESAMDRFRAGEIDVLVGTTVIEVGVDVPNATVMVIEHAERFGLAQLHQLRGRVGRGR 594

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM-PKFLI 646
             SSC L+ H P S ++  RL  +++T DGF I+E D   R  G +LG +Q+GM     +
Sbjct: 595 HASSCFLI-HAPFSGDAGERLRAMESTPDGFKISEIDAAIRGAGNVLGKEQAGMVSGLKL 653

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A P L  SL++ ARK A  +  +D +L +     IR   YL  Y++       G
Sbjct: 654 ADPLLDASLMQTARKAAFALAAEDGELRAREHAMIRS-CYLRYYHDRSILADIG 706


>gi|289550993|ref|YP_003471897.1| ATP-dependent DNA helicase RecG [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180525|gb|ADC87770.1| ATP-dependent DNA helicase RecG [Staphylococcus lugdunensis
           HKU09-01]
          Length = 681

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 223/660 (33%), Positives = 367/660 (55%), Gaps = 19/660 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS  +G+G K    L+++      N     DL+ Y P+ + D      +S   ++ +VT
Sbjct: 12  PLSHIKGLGPKRIAILNEL------NIYSVGDLVLYLPTRYEDNT-VVDLSTAEDQTMVT 64

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +     R   K+ ++     I +   +     LKN     +++TV GK  +
Sbjct: 65  VEGEVYSMPTVAFFGRNKSKLTIHLMINNIAVKCVFFNQPYLKNKIALNQRVTVKGKWNR 124

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
            K  I      +   +S+      +E +Y +  G+     + +I EAL  +  + EW+ +
Sbjct: 125 AKQEINGNRMFFNQSSSKQDE---LEPIYRIKDGIKQKNMRDMIREALRDVK-IHEWLSE 180

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKE 250
           DL  K    S+     I+H+P   KD      AR   A+ EL   ++ +  L R +   +
Sbjct: 181 DLKAKYKLESLESTIKILHHP---KDKAALLRARRTYAFTELFMFELRMQWLNRLEKAAD 237

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             I IN + +  +  +  +PF  T +Q+ ++ +I +D+    RM R+LQGDVGSGKT+VA
Sbjct: 238 NAIEINYDLRQVKDFIDVLPFDLTDAQKQSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVA 297

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            I M A   AG Q+ +M P  ILA+QH E + K     ++ V ++TG++    R+  LE+
Sbjct: 298 AICMYALKTAGYQSALMVPTEILAEQHAESLVKLFGE-RMNVALLTGSVKGKKRQLLLEQ 356

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           +A G    +IGTHAL Q+ +Q+  + LVI DEQHRFGV QR  L +K    +VL MTATP
Sbjct: 357 LAQGTIDCVIGTHALIQEDVQFNNIGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATP 416

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL ++  G++D+S I + P GRKPIKT      + ++V+ ++   L +G++AY ICP
Sbjct: 417 IPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYEQVLHQMTSELQKGRQAYVICP 476

Query: 491 QIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            IE  +   + ++VV  + SL  ++ +  + ++HG++S  DK+ VM+ F      +L++T
Sbjct: 477 LIESSEHLEDVQNVVAIYESLQHYYGAERVGLLHGKLSTEDKDDVMNQFSCHQIDILVST 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R+
Sbjct: 537 TVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERM 595

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +++  T DGF ++E DL+ R  G+  G+KQSG+P F++A       +LE+AR +A  ++ 
Sbjct: 596 TIMTQTNDGFELSERDLEMRGPGDFFGVKQSGLPDFMVANVVEDYRMLEVARDEASELIQ 655


>gi|259047424|ref|ZP_05737825.1| ATP-dependent DNA helicase RecG [Granulicatella adiacens ATCC
           49175]
 gi|259035615|gb|EEW36870.1| ATP-dependent DNA helicase RecG [Granulicatella adiacens ATCC
           49175]
          Length = 683

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 231/688 (33%), Positives = 369/688 (53%), Gaps = 22/688 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +N +F  +    GVG K    L+++            DLL + P  + D      ++ I 
Sbjct: 1   MNEVFQSVQVLPGVGPKRLEPLAEL------GIETVYDLLTHFPFRYEDI-QIRDVNTIM 53

Query: 66  EERIVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           ++  VT+ G ++          K+      +      I + FF +    LK+   +G +I
Sbjct: 54  DQEKVTLKGLVATQPVVSYYGFKKNRLAFRMAIDQQVIQVAFFNQ--PYLKDKVVQGEEI 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL- 182
            + GK    ++ + M        N +D     +EAVY     L      K++  A+ R  
Sbjct: 112 AIYGKWDAKRSTL-MGMKILSNRNVEDEEGDQVEAVYRTNKSLKQATILKLVQTAMDRFE 170

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             +PE +  +L          +A   +H P   KD      A+ +L Y EL   Q+ L  
Sbjct: 171 DKIPEVLPGELTASHHLMGHRDAVRAMHFP---KDELERQSAQYQLVYQELFLYQLRLQW 227

Query: 243 MR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           MR K+ ++  G  +  +    +  ++ +PF  T  Q+  + +I  D+     M R+LQGD
Sbjct: 228 MRQKRHQQTKGQAVLYDNAALKAFIQTLPFELTDGQKKVVNEICFDLRAPYEMNRLLQGD 287

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM-- 359
           VGSGKT+VA IAM A    G QA +M P  ILA+QH   I+K  Q T +   ++TG+M  
Sbjct: 288 VGSGKTIVATIAMVATALTGKQAALMVPTEILAEQHMLTIEKLLQGTSLKAVLLTGSMNR 347

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            Q  R++ L  I  G+A+++IGTHALFQ  + +  L  V++DEQHRFGVQQR  L  K  
Sbjct: 348 SQKKRKELLATIESGEANLVIGTHALFQQDVNFKDLAFVVIDEQHRFGVQQRQALAGKGA 407

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
             +VL MTATPIPRTL +T+ G++D S + E P GR+PIKT  +    ++++ + +   +
Sbjct: 408 GVNVLQMTATPIPRTLAITAFGEMDTSILGEIPRGRQPIKTTWVREQEMEQIFDFVDRQI 467

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSF 537
            +G++AY I P IEE +  + ++  E +  +  HF+    + ++HG+M   +KE VM  F
Sbjct: 468 QKGRQAYMISPLIEESEHLDVQNAEEIYRMISAHFSDRVKVGLLHGKMPADEKEVVMADF 527

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K    ++L++TTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGRG+  S+CIL+  
Sbjct: 528 KANNLQVLVSTTVIEVGVDVPNATVMVILDADRFGLAQLHQLRGRVGRGQHASTCILVAS 587

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           P  ++N   R+ ++  + DGF ++++DL+ R  G++ G+KQSG+P F IA       +LE
Sbjct: 588 PK-TENGKERMRIMCESTDGFYLSQKDLELRGSGDVFGVKQSGIPDFKIADLIRDYDILE 646

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILL 685
            ARKDA    ++DP       + ++  +
Sbjct: 647 QARKDAILYASEDPAGEKTETKRMKTFI 674


>gi|312795168|ref|YP_004028090.1| ATP-dependent DNA helicase recG [Burkholderia rhizoxinica HKI 454]
 gi|312166943|emb|CBW73946.1| ATP-dependent DNA helicase recG (EC 3.6.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 753

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 247/696 (35%), Positives = 371/696 (53%), Gaps = 32/696 (4%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           G K S  L+++         R IDL+ + P  + D      I ++       + G +   
Sbjct: 68  GAKPSDKLARL------GLVRDIDLVLHLPMRYEDETTLTPIGQLLPGMTAQVQGEVVD- 120

Query: 80  SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           +    + RR   + L D  G++ +L F             G ++ V G ++     + MV
Sbjct: 121 NEIAYRPRRQMLVRLRDEHGDVLMLRFLNFWGSQARQLASGARLRVRGDVRGGFFGMEMV 180

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQ 195
           HP Y            +  VYS   G+S    ++ I  AL R P LPE +   +    L 
Sbjct: 181 HPAYRVVEDDTPLPDALTPVYSSTAGVSQAYLRRAIDSALQRTP-LPELLPPQIADAFLA 239

Query: 196 KKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
               PS+A+A   +H+PR   D     E T PA  R+ ++ELLA Q++L     + +   
Sbjct: 240 PLGVPSLADAVRTLHHPRADADEAALMERTHPAWLRIKFEELLAQQLSLKRAHDERRLRA 299

Query: 252 GIPINV-----EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
              +          +  ++   +PF  T +Q+ A + I  D++  + M R+LQGDVGSGK
Sbjct: 300 APAMARRPAADRDALVTRLHAALPFQLTGAQQRASEQIAADLAAAHPMQRLLQGDVGSGK 359

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA +A A A++AG QA +MAP  +LA+QH   ++ + +   +    + G++    +R 
Sbjct: 360 TVVAALAAAQAIDAGYQAALMAPTELLAEQHARKLRGWLEPLGVRTAWLAGSLKARDKRA 419

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT------- 419
           ALE +A G A ++IGTHA+ Q+++++ +L LVIVDEQHRFGV+QRL L  KA        
Sbjct: 420 ALEAVASGDAPLVIGTHAMIQEAVKFARLGLVIVDEQHRFGVEQRLALRAKAQAEAAVSG 479

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR P+ T ++   R DEVI R++  
Sbjct: 480 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPVLTKLVSDARRDEVIARVREA 539

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ V+ + +L        + ++HGR++  DK  VM  F
Sbjct: 540 ALAGRQVYWVCPLIEESEALQLQTAVDTYETLVAALPQLQVGLVHGRLAAADKADVMARF 599

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                 LL+ATTVIEVG+DV +AS++++E+AE FGLAQLHQLRGRVGRG + S C+L+Y 
Sbjct: 600 TRNEIHLLVATTVIEVGVDVPNASLMVVEHAERFGLAQLHQLRGRVGRGSQSSVCLLMYA 659

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 660 SPLSLAARERLRTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADIEQDAWLIE 719

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR+ A+ +L + P   +      R L    QY +A
Sbjct: 720 PARRAAERLLGEYPQAAA--AHLTRWLGSREQYLKA 753


>gi|255524279|ref|ZP_05391238.1| ATP-dependent DNA helicase RecG [Clostridium carboxidivorans P7]
 gi|255512104|gb|EET88385.1| ATP-dependent DNA helicase RecG [Clostridium carboxidivorans P7]
          Length = 685

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 225/663 (33%), Positives = 366/663 (55%), Gaps = 20/663 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
           ++ +S+ +GVG K +  L K            +DLL Y P  +        I+       
Sbjct: 8   YSDISSIKGVGPKTADNLRK------CGIFNVMDLLLYFPRDYESISSCGNINGEKTNNK 61

Query: 70  VTI-TGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           V I    I      + +  +    I+ +DG   +   +F +    +KN F  G   T+ G
Sbjct: 62  VIINCKTIRIERDIRTKTGKTLTTIVFHDGNNILKGKWFNQ--PYIKNSFRIGNIYTLMG 119

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           KI++ +  + + +P  + +N         I   Y L +G++ +L  K++   L  + V+ 
Sbjct: 120 KIEEFRGEMFIANPKLLKNNQNISKVEEKIIPKYPLKSGITNNLVIKLVNIILEDV-VIV 178

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +   ++ K     + +A  +IHNP    + +  +   +RL + EL    + +L+++  
Sbjct: 179 ENLPDYIINKYKLCDLDKAIRVIHNPINLAELDEAT---KRLKFQELFTYSLKILMLKNY 235

Query: 247 F-KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           F + + GI  ++  +    +   IP+  TK+Q   I++IL D  +   M R++QGDVGSG
Sbjct: 236 FNENKKGIAFSIAKE-LNALKDRIPYQLTKAQNRVIREILIDEKKSCPMNRLVQGDVGSG 294

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VALI++   ++ G QAV+MAP  ILA QHY+   K  +   I ++++ G++ Q +++
Sbjct: 295 KTIVALISIFNVIKNGYQAVMMAPTEILATQHYDEALKLFEGFGINIKLLCGSVSQKNKQ 354

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           +  + +A G+  +IIGTHAL +D +++  L +V+ DEQHRFGV QR +LT K      ++
Sbjct: 355 EIKKELASGEIDLIIGTHALIEDDVEFKNLGMVVTDEQHRFGVMQRSRLTNKGANVDTIV 414

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L   GD+++S I E P GR+ I+T  I  +   +        + +G++ 
Sbjct: 415 MTATPIPRTLSLYLYGDLNVSIIDELPPGRQKIETQYIKQDFKYKAYNFALDEIRKGRQV 474

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP +EE +E    SV   +  L E +    S+ I+HG+MS   KE +M+ FK G  K
Sbjct: 475 YIVCPLVEENEELKLSSVENLYTELKEEYFKDISVEILHGKMSPKLKEKIMNEFKEGKTK 534

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           ++++TTVIEVGI+V +A+++IIENAE FGLAQLHQLRGRVGRG+  S CIL+        
Sbjct: 535 VIVSTTVIEVGINVPNATLMIIENAERFGLAQLHQLRGRVGRGKHKSYCILIADIKNDII 594

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++K++ DGF IAE+DLK R  GEI G +Q G    ++A      +LL++A  +A
Sbjct: 595 -RKRMEIMKSSNDGFFIAEQDLKIRGAGEIFGFRQHGENGLILADVVQDINLLKLANAEA 653

Query: 664 KHI 666
           K +
Sbjct: 654 KRL 656


>gi|207721611|ref|YP_002252050.1| atp-dependent dna helicase protein [Ralstonia solanacearum MolK2]
 gi|206586772|emb|CAQ17357.1| atp-dependent dna helicase protein [Ralstonia solanacearum MolK2]
          Length = 730

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 247/703 (35%), Positives = 371/703 (52%), Gaps = 44/703 (6%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI----SEERIVTITGYISQH 79
           +  L+K+           +DL+ + P  + D      I+E     +      + G +++ 
Sbjct: 45  ADKLAKL------GLRHDVDLVLHLPMRYEDETTLLTIAEAIARANTGWAAQVEGAVTR- 97

Query: 80  SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           +   L+ RR   + + D +GE+ L F       +K +  EG ++ V G+++       MV
Sbjct: 98  NEVALRPRRQLVVHIADDSGELVLRFLNFYGSQVKQM-AEGVRLRVRGEVRGGFFGAEMV 156

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQ 195
           HP        +     +  VY    G++    +K I+ AL R P LPE +   L    L 
Sbjct: 157 HPTVRAVAPDEPLPDRLTPVYPSTAGVAQAYLRKAILNALGRTP-LPETLPDSLMRGPLA 215

Query: 196 KKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
                + AEA  ++H P    D     E T PA  R+ +DELLA Q++L   +   +   
Sbjct: 216 PLKLMAPAEAVRLLHQPTPDVDEHSLVERTHPAWLRIKFDELLAQQLSLKRAQAARRTRS 275

Query: 252 GIPINVEGKI--AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
              +   G      + +  +PF  T +Q    ++I  D+++   M R+LQGDVGSGKT++
Sbjct: 276 APVLRAGGAQGLLARFMAALPFKLTGAQARVWEEIRADLARPYPMQRLLQGDVGSGKTVI 335

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A +A   A++AG QA +MAP  +LA+QHY  +  + +   + +  + G++ +  + +A  
Sbjct: 336 AALAACQAIDAGRQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAA 395

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------- 418
           R+A G A ++IGTHAL QDS+ + +L L +VDEQHRFGV QRL L  KA           
Sbjct: 396 RVAAGAAQLVIGTHALIQDSVTFARLGLAVVDEQHRFGVAQRLALRGKAGGADAPVAETA 455

Query: 419 -TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+M+ATPIPRTL +T   D+D+S I E P GR P+ T ++   R DEVIER+  
Sbjct: 456 QPVPHQLMMSATPIPRTLAMTYYADLDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHA 515

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
              EG++ YW+CP IEE +    ++ VE F +L +      + ++HGR+   DK +VM +
Sbjct: 516 AAREGRQVYWVCPLIEESEALQLQTAVETFETLSQSLAGLKVGLVHGRLPSADKAAVMSA 575

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   +L+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S CILLY
Sbjct: 576 FAGGELHVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLY 635

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLS  +  RL  ++ T DGF IA  DL  R  GE LG +QSG      A       ++
Sbjct: 636 QAPLSPTAKQRLQTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLNHDAWMV 695

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           E A+  A+ +L + P+  +V     R L       E   ++R 
Sbjct: 696 EFAQGAAEQMLARFPE--AVEAHLKRWL------GEREHYLRV 730


>gi|199597141|ref|ZP_03210573.1| RecG-like helicase [Lactobacillus rhamnosus HN001]
 gi|258508655|ref|YP_003171406.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus GG]
 gi|199591945|gb|EDZ00020.1| RecG-like helicase [Lactobacillus rhamnosus HN001]
 gi|257148582|emb|CAR87555.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus GG]
 gi|259649961|dbj|BAI42123.1| DNA helicase RecG [Lactobacillus rhamnosus GG]
          Length = 679

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 214/684 (31%), Positives = 359/684 (52%), Gaps = 23/684 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L  P+    GVG K    L+ +            D+LFY P  + D      ++E +++
Sbjct: 2   ALTDPVRVLPGVGPKREEGLASL------GIHTVGDVLFYFPFRYDDL-KVKDLAEAADQ 54

Query: 68  RIVTITGYISQHSSFQLQK--RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
             +TI G +            R    + L      I + F+ +    LK+ F  G +  V
Sbjct: 55  EKLTIKGVVVADPVISRFGPHRSRVNVKLQVERSVILVTFYNQ--PWLKDRFQMGDEAAV 112

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV- 184
            GK    +  +  +        +Q  N P + A+Y++   + +    ++I  A +R    
Sbjct: 113 FGKWDAQRRSLTGM----KILATQSQNQPSMAAIYTVNKNVRMGTLLELIKAAWARDHQN 168

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + + I   +       S  +  + +H P   ++      AR    + E    Q+ +  ++
Sbjct: 169 IHDLIPASIRAHYRLMSDEQLVHGMHFPDTPQE---AKAARRSGVFREFFLFQLQIQALK 225

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +       G+ I  +    + ++  +PFS T +Q+  + +I  DM + N M R+LQGDVG
Sbjct: 226 QLNDNANNGLAIPYDNHALRALIATLPFSLTNAQKRVVNEICADMRRPNHMNRLLQGDVG 285

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AAV AG QA +M P  +LA+QH+  ++    +  + + ++TG+     
Sbjct: 286 SGKTIVAAIVLYAAVTAGYQAALMVPTEVLAEQHFAKLEALFADFPVKLGLLTGSTTAKK 345

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  +  G  ++IIGTHAL Q  + +  L LV++DEQHRFGV QR  L +K   P +
Sbjct: 346 RREMLAELRDGTLNLIIGTHALIQKGVDFKALGLVVIDEQHRFGVNQRKILQEKGQKPDL 405

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +  N++ +V   ++  +  G 
Sbjct: 406 LSMTATPIPRTLAITAYGEMDVSTIDELPAGRKPITTTWLRKNQVGQVYRLIRSQVQAGS 465

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           + + I P I E ++ + ++  + F  + +       +A++HG+M   +K+ +M +F +G 
Sbjct: 466 QVFAITPLIAESEKVDLQNAEQLFADMQKAVGDVGQVALLHGKMKPDEKDQIMRAFSHGD 525

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTV+EVG+DV +A+++ I +A+ FGL+QLHQLRGRVGRG + + C+L+  P  +
Sbjct: 526 IAVLVSTTVVEVGVDVPNATVMAIFDADRFGLSQLHQLRGRVGRGSKAAQCLLIADPK-N 584

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T DGFL+A++DL+ R  G+I G KQSG+P+F +A P      LE A++
Sbjct: 585 EQGIARMQIMTKTNDGFLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEAAQQ 644

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
               I   DP L +   Q +   L
Sbjct: 645 IVAKIFKTDPHLLAPEHQPLAAYL 668


>gi|221064802|ref|ZP_03540907.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni KF-1]
 gi|220709825|gb|EED65193.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni KF-1]
          Length = 731

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 231/669 (34%), Positives = 351/669 (52%), Gaps = 35/669 (5%)

Query: 37  NETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLND 96
             TR IDL  + P  + D      +    +   V I   ++ HS  QL+ RR  K+ ++D
Sbjct: 52  GLTRDIDLALHLPLRYEDETRIVPLKNARDGETVQIEATVT-HSEVQLRPRRMLKVTVDD 110

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156
           G+    L FF       K +   G ++ + G++K       M+HP +     +      +
Sbjct: 111 GSSTCVLTFFSFYPSQQKTM-APGARLRIRGEVKGGFWGRQMMHPAFRVAGGELPT--AL 167

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD----LLQKKSF------PSIAEAF 206
             VY     L     ++ I  AL R   L E +  +    + Q            +  A 
Sbjct: 168 TPVYPASASLPQAYLRRAIASALLRAD-LSETLPPEQSPPIAQFYGQDGLQPAYDLRNAL 226

Query: 207 NIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
             +H+P          + + PA +RL  +ELLA Q++    +++  +     +  +  +A
Sbjct: 227 TFLHHPTPDVALVTLEDHSHPAWQRLKAEELLAQQLSQYEAKRERARLRAPVLRPQAGMA 286

Query: 263 ---QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
              Q+ L  +PF  T +Q+  + +I  DM ++  M R+LQGDVGSGKT+VA ++  A +E
Sbjct: 287 DLTQQFLAQLPFGLTGAQQRVVGEIRADMERRIPMHRLLQGDVGSGKTVVAALSAVACIE 346

Query: 320 AGGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           AG Q  +MAP  ILA+QH+     +++         V  + G   +  R   L  +  G+
Sbjct: 347 AGWQCALMAPTEILAEQHFGKLVGWLEPILAPLGKKVAWLAGAQKKKERAAMLALVESGE 406

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMTATPI 431
           A +++GTHA+ Q+ +Q+  L L ++DEQHRFGV QRL L QK       PH+L+M+ATPI
Sbjct: 407 AALVVGTHAVIQEQVQFKNLALAVIDEQHRFGVAQRLALRQKLAATGMEPHLLMMSATPI 466

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL ++   D+D+S I E P GR PI T +I  +R DEVIER+   ++ G++ YW+CP 
Sbjct: 467 PRTLAMSYYADLDVSTIDELPPGRTPIVTKLISDSRKDEVIERIGAQVASGRQVYWVCPL 526

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           IEE +  +  +       L E      + ++H RM   +K++VM+ F  G   +L++TTV
Sbjct: 527 IEESEALDLSNATATHEYLSETLPGVMVGLLHSRMPTAEKKAVMELFSAGVMGVLVSTTV 586

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY----HPPLSKNSYT 606
           IEVG+DV +AS+++IE++E FGL+QLHQLRGRVGRG   S+C+LLY    +  LS     
Sbjct: 587 IEVGVDVPNASLMVIEHSERFGLSQLHQLRGRVGRGAAASACVLLYSVNDNGRLSDTGKE 646

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL  +  T DGF IA  DL+ R  GE LG +QSG P    A  E    LL+ AR+ A  +
Sbjct: 647 RLRAMAETNDGFEIARRDLEIRGPGEFLGARQSGAPMLRFADLEQDVLLLDWARELAPLM 706

Query: 667 LTQDPDLTS 675
           L Q P L +
Sbjct: 707 LEQFPALAA 715


>gi|209542293|ref|YP_002274522.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209529970|gb|ACI49907.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 709

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 262/706 (37%), Positives = 409/706 (57%), Gaps = 20/706 (2%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           R   L PL APL +  GVG   +  L++          R IDLLF+ P S +DR YRP +
Sbjct: 17  RGDNLGPLLAPLGSLPGVGPALAKLLAR-----AVRGQRVIDLLFHLPESVVDRRYRPSL 71

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            +    R+ T+   + +  +     R+P+++L++DG G   L+FF   +         G 
Sbjct: 72  RDAVPGRVATMQVTVRRIDAPARGTRQPWRVLVSDGAGTAELVFF---SSYQARRMRVGS 128

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
            + V+G +    +R+ M HP +I         P +E V+ L  GL     +  + +A   
Sbjct: 129 AVAVSGTLDAFGDRLQMAHPDHIVPGGDIDRIPALEPVWPLTAGLFPRHVRAALHQAFLP 188

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPA-------RERLAYDELL 234
            P LPEW++  L+ ++ +P+   A   +H P    D              R+RLA DELL
Sbjct: 189 FPPLPEWLDSVLVARRHWPNFETALRQLHCPEAFPDLLRGDAWQAAGERARQRLACDELL 248

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A Q+A+   R++ +   G  I   G +  + L    ++PT++Q  A+++I  D++    M
Sbjct: 249 AEQVAMSEARRRNRNRPGRSIVGTGTLRAEALARFGYTPTRAQHRAVREIDSDLAASYPM 308

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           +R+LQGDVG+GKTLVA++AM AA EAG QAV+MAP  ILA+QH    +K      + V  
Sbjct: 309 MRLLQGDVGAGKTLVAMLAMLAAAEAGHQAVLMAPTEILARQHLATFQKLA---PVPVAF 365

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           ++G++    RR  LE IA G+A +++GTHALFQD + +  L L ++DEQHRFGV+QRL L
Sbjct: 366 LSGSVKGRARRTVLEDIASGRAPLVVGTHALFQDKVVFDDLALAVIDEQHRFGVEQRLLL 425

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +K     +L+MTATPIPRTL+LT  G++ +S++ EKPAGR P++T +  +  + +V++ 
Sbjct: 426 GEKGDRADILVMTATPIPRTLLLTQWGEMQVSRLNEKPAGRLPVRTSLHAMASLGDVLDG 485

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           +   ++ G   +W+CP + E +  +  +   RF +L E F   + + HG+     +E+ +
Sbjct: 486 IGRAIARGALVFWVCPLVTESEAMDLAAAEARFAALTERFGPIVGLAHGQQDIAVREAAI 545

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G  K+L+ATTVIEVG+D+  A+I++IE+AE FGLAQLHQLRGRVGRG + S C+L
Sbjct: 546 ADFAAGRTKILVATTVIEVGVDIPAATIMVIEHAERFGLAQLHQLRGRVGRGRDESFCLL 605

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           L+   L   +  RL++L++TEDGFLIA+ED + R  G++ G +QSG+P   +A     D 
Sbjct: 606 LHDDALGSTARRRLALLRDTEDGFLIADEDFRLRGGGDVTGRRQSGLPDLRLATGARLDL 665

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           LL IA +DA+ +   +   +  R  +I  LL L+  ++A + +R+G
Sbjct: 666 LLTIAAQDAQRV--AEGGASESRRNAIAQLLELFDRHDAARILRSG 709


>gi|298373533|ref|ZP_06983522.1| ATP-dependent DNA helicase RecG [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274585|gb|EFI16137.1| ATP-dependent DNA helicase RecG [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 697

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 238/693 (34%), Positives = 371/693 (53%), Gaps = 22/693 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER-IVT 71
           +     +G++ +  L         +     DLL + P  +ID     +I+E+S+    V 
Sbjct: 7   IKYIPKIGERRAGVL-----FAELSVKTLEDLLLHFPYKYIDVRRFYRIAELSDNMPHVQ 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G I+        + R       DG+  + L++F    + +   +  G++  V GK K+
Sbjct: 62  LHGRITDFEMKGQGRSRRLVGYFTDGSESMELVWF-AGEKYVTQKYSVGQEYVVFGKPKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTG-----LSVDLFKKIIVEALSRLPV- 184
                 M HP    +  ++    +    +Y+         L     + II   L+ + V 
Sbjct: 121 WGKVFTMPHPEIEPYEGENRRADIGFRTMYNTTDTMKKHYLHSSALRDIIANLLNNVEVD 180

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           +PE +   L+++    S  EA   +H PR     +  +    RL ++EL   Q+++L   
Sbjct: 181 VPETLPPYLIERYRLISRREAIYNMHIPRNQVLLDAAT---RRLKFEELFYIQMSILRQS 237

Query: 245 -KQFKKEIGIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
             + +K  G  ++  G       +N +PF+ T++Q+  IK+I  D+    +M R+LQGDV
Sbjct: 238 VARQEKSEGFVMDRVGIHFNDFYKNNLPFTLTEAQKRVIKEIHADLKSGRQMNRLLQGDV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VAL++   A++ G QA IMAP  ILA QHY  I + T+   I V ++ G+  + 
Sbjct: 298 GSGKTIVALLSSLIAIDNGFQACIMAPTEILATQHYTGIARLTEGLGINVRLLIGSTKKK 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAP 421
            R +    +  G+  IIIGTHAL +D +++  L  VI+DEQHRFGV QR KL  +    P
Sbjct: 358 DRDQIHRMLESGELDIIIGTHALIEDKVKFRNLGFVIIDEQHRFGVAQRAKLWAKNIQPP 417

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H+L+MTATPIPRTL +T  G++DIS I E P GRKPIKT     N+  ++   L+  L  
Sbjct: 418 HILVMTATPIPRTLAMTVYGNLDISVIDELPPGRKPIKTYHYYDNKRQDLYRFLRHRLDN 477

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
             + Y + P I+E ++ + +++ + +N++ E F    I  +HG+M+  +K+  M  FK+G
Sbjct: 478 KAQVYIVYPLIQESEKLDLKNLEDGYNAMCEVFPDIKIDFLHGKMTPAEKDERMARFKSG 537

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG E S CIL+    +
Sbjct: 538 QTGILMSTTVIEVGVDVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILMSSFKI 597

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIA 659
           S NS  RL ++  T +GF IAE DL  R  GE+ G  QSG+P +  +A       +L+ A
Sbjct: 598 SDNSLRRLQIMTETNNGFEIAEADLTLRGPGELEGTAQSGLPFELHVANLARDGIVLQAA 657

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           R  AK IL +DP L +   + I   L      E
Sbjct: 658 RDTAKQILDRDPRLEAPDNKIIADRLRQLDRKE 690


>gi|332654548|ref|ZP_08420291.1| ATP-dependent DNA helicase RecG [Ruminococcaceae bacterium D16]
 gi|332516512|gb|EGJ46118.1| ATP-dependent DNA helicase RecG [Ruminococcaceae bacterium D16]
          Length = 694

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 221/689 (32%), Positives = 364/689 (52%), Gaps = 31/689 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+ F GVG   S  L K+        TR  DL+ Y P  + DR     I       
Sbjct: 5   LNTPLTDFPGVGPARSAKLEKL------GLTRVRDLMTYFPRDYEDRRKIWSIRSAPLGV 58

Query: 69  IVTITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V +    ++H      ++     K+   D  G + + FF +    ++     G +    
Sbjct: 59  KVCVQAMAAEHPRLSRIRKGMELVKVKAVDHAGALHITFFNQS--YVERAIQAGEEYVFW 116

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VL 185
           G +++  +R  MV+P +   + Q V    I  VY L  G+S  L   +I  A+      +
Sbjct: 117 GVVEEQGSRRTMVNPIFERTDRQAV-TGCILPVYPLTAGISNHLLCSLIRPAVEACASQM 175

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PE + + +  +        +F  IH P   +  +     R RL ++EL      L +++ 
Sbjct: 176 PESLPRSVRLEHELAQTEFSFRNIHFPDSPESLDLA---RRRLTFEELFYLSTGLAMLKH 232

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           +     G  +    +  ++ L  +PF PT++Q   + ++  D+S    M R++QGDVGSG
Sbjct: 233 RRGDAAGRVVP--SRPLEEFLSLLPFPPTQAQRRVMGEVAADLSSGRSMNRLVQGDVGSG 290

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA      A ++G Q  +MAP  +LAQQH   +    +   + V ++TG+   A ++
Sbjct: 291 KTVVAAWGAYLAAKSGMQTALMAPTEVLAQQHARSLSALLEPAGVRVGLLTGSFTPAQKK 350

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           +  + IA G   +++GTHAL    ++++ L L++ DEQHRFGV QR  L  K  APHVL+
Sbjct: 351 RLRQAIAQGDVDLVVGTHALISQDVEFHDLGLMVADEQHRFGVAQRSALAAKGHAPHVLV 410

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPRTL L   GD+D+S I + P GR P++T ++  ++   +   ++ ++ EG++A
Sbjct: 411 MSATPIPRTLALIIYGDLDVSVIDQLPPGRTPVETYVVHEDKRQRMYNFVRKLVGEGRQA 470

Query: 486 YWICPQIEEKKESNF-----------RSVVERFNSLHEHFTS--SIAIIHGRMSDIDKES 532
           Y ICP +E++   +            ++V      L +       +A++HG+M   +K++
Sbjct: 471 YIICPAVEDRTAEDNPDGDPSPFADLKAVKSYAQHLQDEVFPDLRLALLHGKMRPREKDA 530

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM +F  G   +L++TTV+EVG+DV +A++II+ENAE FGL+QLHQLRGRVGRG+  S C
Sbjct: 531 VMAAFAAGDVDVLVSTTVVEVGVDVPNAALIIVENAERFGLSQLHQLRGRVGRGKHQSYC 590

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +L+ +   ++++ TRL  L +T DGF I+EEDLK R  G+  G +Q G+P+  +A     
Sbjct: 591 VLITN-SHAQDAMTRLKTLASTTDGFKISEEDLKLRGPGDFFGSRQHGLPQLALADLSGD 649

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+ A++ A+ +L  DP L+    + +
Sbjct: 650 MRLLQQAQQSARQLLQNDPTLSRPENRPV 678


>gi|256847363|ref|ZP_05552809.1| ATP-dependent DNA helicase RecG [Lactobacillus coleohominis
           101-4-CHN]
 gi|256716027|gb|EEU31002.1| ATP-dependent DNA helicase RecG [Lactobacillus coleohominis
           101-4-CHN]
          Length = 676

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 232/665 (34%), Positives = 359/665 (53%), Gaps = 20/665 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P+ST RGVG K +  L+ +            DLL Y PS + D      +    
Sbjct: 1   MKSLQDPVSTIRGVGPKTAEALTTL------GIQTVEDLLTYFPSRYDDF-APTDLETAK 53

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           +++ VTI G I           R  ++      G   +   Y     LK      + +T+
Sbjct: 54  DKQKVTIHGTIVSEPVMSRFGYRRTRLGFRVMVGHAVVQVVYFNQPYLKKQAVMDQDVTI 113

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-V 184
            G     +  I       +  N QD       A+Y     +     +K+I  A      V
Sbjct: 114 MGTWNASRQEIQGTK---LLTNQQDQEMG---AIYPANKHVHQATLRKLIKIAYHNYANV 167

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           +   +   L Q+          + +H P   KD      AR   AY+E    Q+ L  +R
Sbjct: 168 IATLLPISLRQRYQLLDRRTMIHDMHFP---KDGSAARAARRTAAYEEFFLFQLRLQSIR 224

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +  +++ G  I    +  +  ++ IPF  T +Q+  + +I +D+ Q  +M R+LQGDVGS
Sbjct: 225 RANRQKDGNQILYNNQELRDFIKTIPFELTGAQKRVVNEICRDLRQPYQMNRLLQGDVGS 284

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA IA+ A V AG QA +MAP  ILA QH + + K    T + + ++TG+M    +
Sbjct: 285 GKTIVAAIAINAVVIAGYQAALMAPTEILAAQHAQKLAKVFVGTHVNIGLLTGSMNTRQK 344

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R+ L+ I  G  ++IIGTHAL Q+ + Y  L L I+DEQHRFGV QR +L  K   P VL
Sbjct: 345 RQMLKGIKDGSINLIIGTHALIQEQVDYANLGLAIIDEQHRFGVNQRQQLRMKGVHPDVL 404

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            MTATPIPRTL +TS G++D+S I E PAGR+PIKT  +  N+ D+ ++ LK  L++G +
Sbjct: 405 AMTATPIPRTLAITSYGEMDVSIIDELPAGRQPIKTTWLKSNQADQALQFLKGQLAQGAQ 464

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            Y + P IE+ +  + ++  + +    E+F     + ++HGRM +  KE VM  F++   
Sbjct: 465 VYVVSPLIEQSETLDVQNATDLYQEFVEYFAPQYQVGLLHGRMDNEQKEQVMQDFQDNKI 524

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++++ATTVIEVG+D  +A++++I +A+ FGLAQLHQLRGRVGRG++ S C+L+  P  ++
Sbjct: 525 QVMVATTVIEVGVDNPNATVMLIYDADRFGLAQLHQLRGRVGRGQQQSYCLLIADPK-TE 583

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +   R+  +  T DGF++A+ DL+ R  G++LG KQSG+P F +  P     +L+IAR D
Sbjct: 584 DGVKRMQTMVETNDGFVVAQRDLELRGSGDVLGNKQSGVPDFKVGDPVADLKMLQIARSD 643

Query: 663 AKHIL 667
           A +++
Sbjct: 644 AANLI 648


>gi|114331545|ref|YP_747767.1| ATP-dependent DNA helicase RecG [Nitrosomonas eutropha C91]
 gi|114308559|gb|ABI59802.1| ATP-dependent DNA helicase RecG [Nitrosomonas eutropha C91]
          Length = 685

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 244/681 (35%), Positives = 370/681 (54%), Gaps = 22/681 (3%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
             L K+            DL+ + P  + D      ISE +    + I G I++     +
Sbjct: 15  KKLEKL------GLFSDFDLVLHLPLRYEDETQLSSISEAAPGNTIQIEGVITE-QEVLI 67

Query: 85  QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
             RR     ++D +G + L F       +   +  G ++ + G+++   + + MVHP   
Sbjct: 68  SPRRQLVYRVSDDSGVLYLRFLNFYASQI-TAWSPGTRLRILGEVRAGFHGMEMVHPKCR 126

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL---PVLPEWIEKDLLQKKSFPS 201
                      +  VY +  GL      ++I +A  RL     L E + + +L     P+
Sbjct: 127 VVRDNMALATALTPVYPVTAGLPQRTLIRLITQAFERLRRKQFLREILPETILSACPLPA 186

Query: 202 IAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
             E+ +++H P      E     + PA +R+ +DELLA QI+L     Q + +    ++ 
Sbjct: 187 FEESLSLLHCPPSDISMESLQQRSHPAWQRIKFDELLAQQISLRCHYHQRRNQQAPTLSQ 246

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +  + Q +L  +PFS T++Q   + +I  D++Q   M R+LQGDVGSGKT+VA +A   A
Sbjct: 247 QVSLQQVLLGVLPFSLTEAQHKVVAEISTDLAQPYPMQRLLQGDVGSGKTVVAALAALQA 306

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           +  G Q  +MAP  ILA+QH+  +  +     I V  ++G+  ++ R + L + A G   
Sbjct: 307 IGNGYQVAVMAPTEILAEQHFRKLSGWLVPLGIEVGWLSGSQKKSLRSQELAKTASGATM 366

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPR 433
           +IIGTHALFQ+++Q+ +L LVI+DEQHRFGV QRL L  K       PH L+M+ATPIPR
Sbjct: 367 LIIGTHALFQEAVQFKQLGLVIIDEQHRFGVGQRLALRMKREDESSLPHQLMMSATPIPR 426

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL ++   D+D+S I + P GR P+ T +I  NR +E+I R++     G++AYW+CP IE
Sbjct: 427 TLSMSYFADLDVSVINQLPPGRLPVATRLIDNNRREEIIARIREACLAGRQAYWVCPLIE 486

Query: 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E +    ++ VE + +L + F   SIA+IHGR+   +K ++M  F  G  +LL+ATTVIE
Sbjct: 487 ESEVLQLKTAVETYETLSQIFPELSIALIHGRLGSDEKSAIMAKFSQGAVQLLVATTVIE 546

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV +AS+++IE+AE  GL+QLHQLRGR+GRG     CIL+Y  PLS  +  RL ++ 
Sbjct: 547 VGVDVPNASLMVIEHAERMGLSQLHQLRGRIGRGSATGICILMYQRPLSVVARKRLQIIF 606

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
              DGF IA +DL  R  GE LG +QSG+P    A  E    LLE+AR  A+ IL   P+
Sbjct: 607 EHNDGFEIARQDLLLRGPGEFLGTRQSGVPLLRFADLEEDIDLLEMARNVAEEILRDYPN 666

Query: 673 LTSVRGQSIRILLYLYQYNEA 693
               +    R L     Y  A
Sbjct: 667 --EAQHHVQRWLGNREDYLRA 685


>gi|296185398|ref|ZP_06853808.1| ATP-dependent DNA helicase RecG [Clostridium carboxidivorans P7]
 gi|296050232|gb|EFG89656.1| ATP-dependent DNA helicase RecG [Clostridium carboxidivorans P7]
          Length = 681

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 225/663 (33%), Positives = 366/663 (55%), Gaps = 20/663 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
           ++ +S+ +GVG K +  L K            +DLL Y P  +        I+       
Sbjct: 4   YSDISSIKGVGPKTADNLRK------CGIFNVMDLLLYFPRDYESISSCGNINGEKTNNK 57

Query: 70  VTI-TGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           V I    I      + +  +    I+ +DG   +   +F +    +KN F  G   T+ G
Sbjct: 58  VIINCKTIRIERDIRTKTGKTLTTIVFHDGNNILKGKWFNQ--PYIKNSFRIGNIYTLMG 115

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           KI++ +  + + +P  + +N         I   Y L +G++ +L  K++   L  + V+ 
Sbjct: 116 KIEEFRGEMFIANPKLLKNNQNISKVEEKIIPKYPLKSGITNNLVIKLVNIILEDV-VIV 174

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +   ++ K     + +A  +IHNP    + +  +   +RL + EL    + +L+++  
Sbjct: 175 ENLPDYIINKYKLCDLDKAIRVIHNPINLAELDEAT---KRLKFQELFTYSLKILMLKNY 231

Query: 247 F-KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           F + + GI  ++  +    +   IP+  TK+Q   I++IL D  +   M R++QGDVGSG
Sbjct: 232 FNENKKGIAFSIAKE-LNALKDRIPYQLTKAQNRVIREILIDEKKSCPMNRLVQGDVGSG 290

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VALI++   ++ G QAV+MAP  ILA QHY+   K  +   I ++++ G++ Q +++
Sbjct: 291 KTIVALISIFNVIKNGYQAVMMAPTEILATQHYDEALKLFEGFGINIKLLCGSVSQKNKQ 350

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           +  + +A G+  +IIGTHAL +D +++  L +V+ DEQHRFGV QR +LT K      ++
Sbjct: 351 EIKKELASGEIDLIIGTHALIEDDVEFKNLGMVVTDEQHRFGVMQRSRLTNKGANVDTIV 410

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L   GD+++S I E P GR+ I+T  I  +   +        + +G++ 
Sbjct: 411 MTATPIPRTLSLYLYGDLNVSIIDELPPGRQKIETQYIKQDFKYKAYNFALDEIRKGRQV 470

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP +EE +E    SV   +  L E +    S+ I+HG+MS   KE +M+ FK G  K
Sbjct: 471 YIVCPLVEENEELKLSSVENLYTELKEEYFKDISVEILHGKMSPKLKEKIMNEFKEGKTK 530

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           ++++TTVIEVGI+V +A+++IIENAE FGLAQLHQLRGRVGRG+  S CIL+        
Sbjct: 531 VIVSTTVIEVGINVPNATLMIIENAERFGLAQLHQLRGRVGRGKHKSYCILIADIKNDII 590

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++K++ DGF IAE+DLK R  GEI G +Q G    ++A      +LL++A  +A
Sbjct: 591 -RKRMEIMKSSNDGFFIAEQDLKIRGAGEIFGFRQHGENGLILADVVQDINLLKLANAEA 649

Query: 664 KHI 666
           K +
Sbjct: 650 KRL 652


>gi|260222588|emb|CBA32298.1| ATP-dependent DNA helicase recG [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 729

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 241/708 (34%), Positives = 366/708 (51%), Gaps = 49/708 (6%)

Query: 11  APLSTFRGVGKKYS--LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           AP+S  +    K      L K+         R IDL  + P  + D     K+ ++ +  
Sbjct: 28  APMSDAK---PKTESQKALEKL------GLRRDIDLALHLPLRYEDETRIVKLIDVRDST 78

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            V I   ++ H     + RR   + ++DGT   TL FF       K     G K+ V G+
Sbjct: 79  PVQIEATVT-HQEVSYRPRRQLIVTVDDGTDTCTLRFFSFYGSQQK-ALAVGNKVRVRGE 136

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           +K       M+HP +            +  VY    GL     +K ++  L+R  +   +
Sbjct: 137 VKGGFLGRTMLHPTFKAAGGDLPT--ALTPVYPTVAGLPQAYLRKAVLSGLARADLSDTF 194

Query: 189 IEKDL-----LQKKS----FPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLA 235
              DL      Q ++      ++ +A   +H+P      +     + PA +RL  +ELLA
Sbjct: 195 APGDLEWLQHRQHQNGQQALWTLRDALQFLHHPTPDVSLDTLMDHSHPAWQRLKAEELLA 254

Query: 236 GQIALLLMRKQFKKEIGIPINVE--GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            QI+ L  R++        +     G +  ++L  +PF  T +Q+   ++I +DM+++  
Sbjct: 255 QQISQLQSRRERASLKAPQLQAVEGGTLHARLLAALPFGLTNAQQRVGEEIAKDMARRIP 314

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVG+GKT+VA ++ A  ++AG Q  +MAP  ILA+QH+  +  + +   I   
Sbjct: 315 MHRLLQGDVGAGKTVVAALSAAICMDAGWQCALMAPTEILAEQHFRKLLGWLEPLGITTA 374

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            +TG      RR  L  I  G+A +++GTHA+ QD +++  L L I+DEQHRFGV QRL 
Sbjct: 375 WLTGTQKAKERRAMLALIESGEAQLVVGTHAIIQDKVKFKNLALAIIDEQHRFGVAQRLA 434

Query: 414 LTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L  K       PH+L+MTATPIPRTL ++   D+D+S + E P GR PI T ++   R D
Sbjct: 435 LRNKLHHEDMEPHLLMMTATPIPRTLAMSYYADLDVSTLDELPPGRTPIVTKVVNDARRD 494

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---------IAI 520
           EVIER++  +S+G++ YW+CP IEE +  +  +  +    L E    +         I +
Sbjct: 495 EVIERIRAQISQGRQVYWVCPLIEESEALDLSNATQTHADLAEALQGATRSDGQPVLIGL 554

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +H RM   DK++VM +F  G   +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLR
Sbjct: 555 LHSRMHVDDKKAVMGAFTAGLMSVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLR 614

Query: 581 GRVGRGEEISSCILLYH----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           GRVGRG   S+C+LLY     P L + +  RL  +  T DGF IA  DL+ R  GE LG 
Sbjct: 615 GRVGRGAAASACVLLYSTGDAPRLGEAARERLKAMAETNDGFEIARRDLEIRGPGEFLGA 674

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           +QSG      A       LL+ A+ +A  +L   P L +      R L
Sbjct: 675 RQSGEAMLRFADLATDTELLDWAKAEAPMLLDTYPHLAAK--HVARWL 720


>gi|123966061|ref|YP_001011142.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
           9515]
 gi|123200427|gb|ABM72035.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT
           9515]
          Length = 818

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 242/682 (35%), Positives = 375/682 (54%), Gaps = 27/682 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L++ +S  + +GK     L+++            DL+ Y P +++D   R KI  +  + 
Sbjct: 123 LYSDISLIKSIGKVTKKKLNEL------GIFNIKDLINYFPRTYLDYTNRVKIVNLKPDN 176

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVF 117
           + T    I + S ++ Q      I+   + D T  I +  F+              K+++
Sbjct: 177 LYTCIATIKKFSIYKSQNNSNLSIMNIVIFDETSSIKVTKFFLGKRYRSYSFYTSQKSLY 236

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF---PLIEAVYSLPTGLSVDLFKKI 174
             G KI ++GK+K  +     + P     N+ D +F     I  +YSL    S   F K+
Sbjct: 237 IPGTKIAISGKVKLSEYGKNFIDPQIEILNNNDESFNFSGKIMPLYSLSESFSNISFIKL 296

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           I + +      P+ + +  +   S    +++   IH P      +    +++RL +DEL 
Sbjct: 297 IKKVIIYSKDYPDLLTQKQISSLSLLPKSDSLINIHLPPNQ---DALIESKKRLVFDELF 353

Query: 235 AGQIALLLM-RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q+  LL  RK  KK        +  + Q  L  IPF  TKSQE  + +I  D+S    
Sbjct: 354 LLQMKFLLRKRKNNKKSTNRTFAQKRFLLQDFLNKIPFQLTKSQEKVLDEIKLDISDLTP 413

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT++A++++   +E   Q  +M P  +LA QHY+ + KY     + VE
Sbjct: 414 MSRLLQGDVGSGKTIIAIVSLLIILEKDQQGALMVPTEVLANQHYKNLLKYLNPLSVSVE 473

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TGN PQ  R++ L  + +G   I++GTHALF+D + +  L +V++DEQHRFGV QR +
Sbjct: 474 LLTGNTPQKKRKEILINLKNGMVDILVGTHALFEDKVIFNSLGMVVIDEQHRFGVTQRNR 533

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K    ++L MTATPIPRTL L+  GD+DIS+ITE P GR PI T II  + +D++  
Sbjct: 534 LLNKGDNTNLLSMTATPIPRTLALSLYGDLDISQITELPPGRVPIITKIITEDDLDKLFS 593

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH--FTSSIAIIHGRMSDIDKE 531
            ++  +  GK+AY I P IE+ ++ N  S    F  L E     + + ++HG+++  +K 
Sbjct: 594 LVENEIDNGKQAYVILPLIEDSEKMNLSSAKNIFQYLSEEIFLKNKVGLLHGKLNSDEKN 653

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            V++SF      +L++TTVIEVGIDV +ASI+II N+E FGL+QLHQLRGRVGRG   S 
Sbjct: 654 IVINSFLKNEISILVSTTVIEVGIDVPNASIMIIYNSERFGLSQLHQLRGRVGRGTHKSF 713

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C L+           RL VL+ + DGF IAE+DL+ R  G++LG KQSG+P F++     
Sbjct: 714 CYLITSDKNGLE-NKRLKVLEKSNDGFYIAEKDLEIRGPGQLLGYKQSGLPDFVLDNLPN 772

Query: 652 HDSLLEIARKDAKHILTQDPDL 673
           +  L+E AR++A++++  DPDL
Sbjct: 773 NKVLIEKAREEAQNVIKDDPDL 794


>gi|323340718|ref|ZP_08080970.1| DNA helicase RecG [Lactobacillus ruminis ATCC 25644]
 gi|323091841|gb|EFZ34461.1| DNA helicase RecG [Lactobacillus ruminis ATCC 25644]
          Length = 680

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 227/669 (33%), Positives = 362/669 (54%), Gaps = 25/669 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   +S   G+G K  L L  +            DLL Y+P  + D     ++SE++
Sbjct: 1   MKSLQDKVSNLSGIGPKKELALKAL------GIETIEDLLCYYPFRYEDMAT-KEVSELA 53

Query: 66  EERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           + +   I G ++         R        L  G   I + FF      LK+    G  +
Sbjct: 54  DGQKAVIQGVVATAPVVVRFGRAKNRLNFKLLAGHDVIQITFF--GQAYLKDRVQPGSDV 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL- 182
            V GK    +  +  +        S   +   I  +Y     +     K+++ +A     
Sbjct: 112 AVYGKYDTARQSMTGMK-----LFSNGGSQEDIAGIYRASKEIKAQTIKQLVKKAYEEYQ 166

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            V+ E + +   +K    +  E  + +H P+  ++FE    AR    +DE    +  L L
Sbjct: 167 DVIEEIVPESTRRKFRLLNRKEMIHDMHFPKTTQEFE---IARRSAIFDEFFKYEARLAL 223

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           ++K  + + G+ I  +  + ++ +  +PF  T +Q+  + +I +DM +   M R+LQGDV
Sbjct: 224 LKKLDRNDAGLLIKYDNSMVKRFISALPFELTNAQKRVVNEICKDMHRPLHMNRLLQGDV 283

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG--NMP 360
           GSGKT++A IAM AAV AG QA +MAP  ILAQQH + +    Q+  + V ++TG     
Sbjct: 284 GSGKTVIAAIAMYAAVTAGFQAALMAPTEILAQQHAKKLSDLFQDFGVSVCLLTGTEASK 343

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +   LER+A+ +  I++GTHAL QD + + KL LV+ DEQHRFGV QR  L +K   
Sbjct: 344 TKVKHDILERLANKEIDILVGTHALIQDPVIFKKLGLVVTDEQHRFGVNQRKALREKGEN 403

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL MTATPIPRTL +T+ G++D+S I E P GRKPI+T  +  N+++  ++ L+  L 
Sbjct: 404 PDVLAMTATPIPRTLAITTYGEMDVSVINELPKGRKPIRTSWVKQNQMNATLDFLERQLK 463

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFK 538
           +G +AY + P IEE +  + ++  E F  L + +     + ++HGRM   +K+ +M  FK
Sbjct: 464 DGSQAYVVSPLIEESEAVDLKNAQEVFEKLEKRYAPCYKVGLLHGRMKSDEKDEIMKDFK 523

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L++TTV+EVG+DV +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL   P
Sbjct: 524 EGKYDILVSTTVVEVGVDVPNATVMVILDADRFGLAQLHQLRGRVGRGSKASYCILCADP 583

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             +     R+  +  T DGF+I+++DL+ R  GE+LG +QSG+P F I  P  + + L+ 
Sbjct: 584 K-TDYGKERMQTMVETTDGFVISQKDLELRGPGEVLGSRQSGLPDFRIGDPVANFNTLQA 642

Query: 659 ARKDAKHIL 667
           A ++A+ I+
Sbjct: 643 AMEEARAII 651


>gi|227432482|ref|ZP_03914468.1| ATP-dependent DNA helicase RecG [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351753|gb|EEJ41993.1| ATP-dependent DNA helicase RecG [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 676

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 237/678 (34%), Positives = 358/678 (52%), Gaps = 25/678 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   ++   GVG K    L KI            DL+ Y P  + D   R   SE  +  
Sbjct: 4   LNDNVNILPGVGPKRLDALHKI------GIFTIEDLINYFPFRYEDLGERLP-SETLDGE 56

Query: 69  IVTITGYISQHSSFQ-LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             T  G +S+ +      KR   +  L      + +LFF +    +      G+++ V G
Sbjct: 57  KATFKGIVSKPAVVTLFGKRSQTRFGLMIDHENVRVLFFNQ--PWIAQNVEVGQEVAVYG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLP 186
                K  +  +       N        ++ +Y     +S    + +I  A   +   + 
Sbjct: 115 TYDAAKVFLTGMKVISKASNE-------LDPIYPSSKQISAKTIRHLIEIAWDDVRGTVG 167

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
             +   + QK            +H P    D E    AR  +A++E    Q+ L L++  
Sbjct: 168 SLVPDKIRQKYRLLDRNTQIENMHFP---ADMEQAKLARRSIAFEEFFIFQMRLQLLKLA 224

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            K   G  IN + K   K    +PF+ T +Q+  + +IL+D  +   M R+LQGDVGSGK
Sbjct: 225 DKNFSGEGINYDSKALNKFEAGLPFTLTVAQQKVVSEILKDQKRPVHMNRLLQGDVGSGK 284

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHR 364
           T+VA IA+ A V AG QA +MAP  ILAQQH   +    + + +   +E++T  M  A R
Sbjct: 285 TVVAAIALYAVVTAGMQAALMAPTEILAQQHAINLASMFEKSGVDIRIELLTSGMKAAAR 344

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R+ LE +A G   I++GTHAL Q  ++++ L L ++DEQHRFGV QR KL +    P +L
Sbjct: 345 RQLLEDLADGTIDILVGTHALLQPDVKFHHLGLAVIDEQHRFGVNQRAKLRENGVNPDIL 404

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            MTATPIPRTL +T+ G++D+S I + P GRK I+T  I  N+ID  I  LK  LSEG +
Sbjct: 405 AMTATPIPRTLSITAYGEMDVSIIDQLPNGRKQIQTRKISHNQIDSAINFLKQQLSEGAQ 464

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLH-EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           AY + P IEE    + ++    + +L  E    +I ++HGR+S+ +K+++M  FK    +
Sbjct: 465 AYVVTPLIEESAALDVQNAQAMYEALQLELPNDTIGLLHGRLSNDEKKALMADFKRNKIQ 524

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ATTVIEVG+DV +ASI++I +A+ FGLAQLHQLRGRVGRG   S  IL+  P  +  
Sbjct: 525 VLVATTVIEVGVDVPNASIMLIMDADRFGLAQLHQLRGRVGRGTRQSYTILVADPK-TDY 583

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              RL  +  T DGFL+A++DL+ R  G+ILG KQSG+P+F +  P     ++E+A+++A
Sbjct: 584 GRARLDAMVETTDGFLLAQKDLELRGSGDILGTKQSGVPEFAVGDPIKDLKMMEVAQQEA 643

Query: 664 KHILTQDPDLTSVRGQSI 681
             +++ D    S   Q +
Sbjct: 644 ISMVSTDDWDKSSENQEL 661


>gi|121603237|ref|YP_980566.1| ATP-dependent DNA helicase RecG [Polaromonas naphthalenivorans CJ2]
 gi|120592206|gb|ABM35645.1| ATP-dependent DNA helicase RecG [Polaromonas naphthalenivorans CJ2]
          Length = 715

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 235/671 (35%), Positives = 354/671 (52%), Gaps = 29/671 (4%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN 95
               R IDL  + P  + D     ++++  +  +V   G ++ HS   ++ RR   + ++
Sbjct: 43  LGLRRDIDLALHLPLRYEDETRITRLADARDGEVVQFEGEVT-HSEVLIRSRRQLLVTVD 101

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL 155
           DG+    L F        K     G  + V G+++       MVHPH+     +      
Sbjct: 102 DGSDTCVLRFLNFYPSHQK-TLSVGAWVRVRGELRGGFLGREMVHPHFKLAGGELP--GA 158

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK---SFPSIAEAFNIIHNP 212
           +  VY    GL     +K ++  L+R   L E I    L K       S+ EA   +H+P
Sbjct: 159 LTPVYPTSAGLPQVYLRKAVLSGLARAD-LSETIPAPFLSKNMPLRLSSLREALQFLHHP 217

Query: 213 RKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN------VEGKIA 262
                     + + PA +RL  +ELLA QI+ L  R+         +N          + 
Sbjct: 218 TPDVALQTLEDRSHPAWQRLKAEELLAQQISQLQSRRVRAAMRAPALNGPAMRGTHCTLQ 277

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +++L  +PF  T +Q+    +I  D+ +   M R+LQGDVG+GKT+VA +A A  ++AG 
Sbjct: 278 EQLLERLPFRLTGAQQRVSAEIEVDLKKNVPMHRLLQGDVGAGKTVVAALAAARCIDAGW 337

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  +MAP  ILA+QH+  +  + +   I    +TG+     RR+ L  +  G+A ++IGT
Sbjct: 338 QCALMAPTEILAEQHFSKLISWLEPLGIKTARLTGSQKPKERREMLALVESGEAGLVIGT 397

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLT 438
           HA+ Q  +++  L L I+DEQHRFGV QRL L  K T     PH+L+MTATPIPRTL ++
Sbjct: 398 HAVIQSKVKFKNLALAIIDEQHRFGVAQRLALRSKMTHEGQEPHLLMMTATPIPRTLAMS 457

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
              D+D+S + E P GR PI T ++   R DEVI R++  +++G++ YW+CP IEE +  
Sbjct: 458 YYADLDVSTLDELPPGRTPIVTKLVNDARRDEVIARIQAQIAQGRQIYWVCPLIEESESI 517

Query: 499 NFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +  +   +L E      + ++H RM   +K++VM  F  G   +L++TTVIEVG+DV
Sbjct: 518 DLVNATQTHAALSEALPGVMVGLLHSRMPPAEKKAVMSLFTEGVMAVLVSTTVIEVGVDV 577

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH----PPLSKNSYTRLSVLKN 613
            +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY     P L + +  RL  +  
Sbjct: 578 PNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYSTGDAPRLGEVARARLKAMVE 637

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL  R  GE LG +QSG      A  +    LL  AR+ A  +L Q PDL
Sbjct: 638 TNDGFEIARRDLDIRGPGEFLGARQSGAAMLRFADLQTDAGLLAWAREVAPLMLDQYPDL 697

Query: 674 TSVRGQSIRIL 684
                  +R L
Sbjct: 698 A--ERHVLRWL 706


>gi|326315383|ref|YP_004233055.1| ATP-dependent DNA helicase RecG [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323372219|gb|ADX44488.1| ATP-dependent DNA helicase RecG [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 708

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 231/702 (32%), Positives = 357/702 (50%), Gaps = 55/702 (7%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
             L K+        +R IDL  + P  + D      +  + +     I   ++  S  QL
Sbjct: 11  KALQKL------GLSRDIDLALHLPLRYEDETRITPLRNVRDGDTAQIEATVTA-SEVQL 63

Query: 85  QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
           + RR   + ++DGTG   L FF       K     G ++ + G++K       M+HP + 
Sbjct: 64  RPRRQLVVTVDDGTGTCELRFFSFYPSHQK-TLAVGARLRIRGEVKGGFWGRQMLHPAFR 122

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK-------- 196
               +      +  VY    GL     ++ +V AL R+  L E I   L           
Sbjct: 123 LAGGELP--AALTPVYPTTAGLPQPYLRRAVVGALQRVD-LSETIPPGLEPPIPRFLGEG 179

Query: 197 ---KSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              +S+ ++ +A   +H+P          + + PA +RL  +ELLA Q++ L  +++  +
Sbjct: 180 GGGRSWWTLRDALVFLHHPTPDVALATLEDHSHPAWQRLKAEELLAQQLSQLEAKRERDR 239

Query: 250 EIGIPINVEGKIA------QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
                +             +++L  +PF  T +Q+    +I  D+++   M R+LQGDVG
Sbjct: 240 LRAPVLRPVPGEQGGPALHERLLAALPFGLTAAQQRVCAEIAADLARPVPMHRLLQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN----TQIIVEIITGNM 359
           SGKT+VA ++ A  ++AG Q  +MAP  ILA+QH+  +  + +     +   V  + G  
Sbjct: 300 SGKTVVAALSAAVCMDAGWQCALMAPTEILAEQHFRKLIGWLEPLLAASGRRVAWLAGGQ 359

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT---- 415
            +  R   L  +  G+A +++GTHA+ QD +++  L L ++DEQHRFGV QRL L     
Sbjct: 360 KKKERAAMLALVESGEAALVVGTHAVIQDQVRFRNLALAVIDEQHRFGVAQRLALRRKLA 419

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            +   PH+L+M+ATPIPRTL ++   D+D+S I E P GR PI T +I  +R DEVIER+
Sbjct: 420 DQGMEPHLLMMSATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVIERI 479

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---------IAIIHGRMS 526
              ++ G++ YW+CP IEE +  +  +       L E              + ++H RM 
Sbjct: 480 GAQVASGRQVYWVCPLIEESEALDLSNATATHVELSEALQGDPARGQAPVMVGLLHSRMP 539

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM+ F  GT  +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG
Sbjct: 540 PAEKKAVMELFTAGTMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRG 599

Query: 587 EEISSCILLYHP----PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
              S+C+LLY       L + +  RL  +  T+DGF IA  DL+ R  GE LG +QSG P
Sbjct: 600 SAASACVLLYSTGEGGRLGETARDRLRAMAETQDGFEIARRDLEIRGPGEFLGARQSGAP 659

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
               A       LLE AR+ A  +L   P     R    R L
Sbjct: 660 MLRFADLATDTLLLEWARETAPRMLDGHPG--DARRHVGRWL 699


>gi|331269673|ref|YP_004396165.1| ATP-dependent DNA helicase RecG [Clostridium botulinum BKT015925]
 gi|329126223|gb|AEB76168.1| ATP-dependent DNA helicase RecG [Clostridium botulinum BKT015925]
          Length = 673

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 231/666 (34%), Positives = 373/666 (56%), Gaps = 24/666 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +   +++ +G+G K    L+K          + +DLL Y P  +   HY   IS + +E 
Sbjct: 3   INDDVASLKGIGPKTKELLNK------CGIYKILDLLLYFPRDYEKIHYCNDISNLKDED 56

Query: 69  IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V I   + +       KR      ++      E    +F +K   +KN F    +  ++
Sbjct: 57  KVIIKAKVKEIKKDIYVKRNMVISTVIFTKNDLEFQGKWFNQK--YIKNKFKVNEEYIIS 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK+K  K ++ +++P+ +    + +    I   YSL   L+ + F K I   LS +  + 
Sbjct: 115 GKVKMDKYKVSIINPNILEDTEKLIG---ITPKYSLKGSLTNNFFNKTINYILSNI-TIV 170

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E I K++L K +  S+ ++   IH+P + ++  +     +RL + EL    + LL+++ Q
Sbjct: 171 ENIPKNILDKYNLVSLDKSIRNIHHPTREEELLYAM---KRLKFQELFTYSLKLLMLK-Q 226

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           +KK  GI   +  +  + +  N+PF+ T +Q   +++IL D  +   M R++QGDVGSGK
Sbjct: 227 YKKSKGIAFKI-SEELKILKENLPFTLTDAQNKVVREILIDEKRDRPMNRLVQGDVGSGK 285

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+V+LIA+   V+ G Q V+MAP  ILA QHYE      +N  + +E++TG+  +    K
Sbjct: 286 TIVSLIALFNIVKNGYQGVLMAPTEILANQHYEQAINLFENFNVKIELLTGSTKKKDIIK 345

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
              ++  G+  ++IGTHAL +D +++  L +V+ DEQHRFGV+QR KL  K     VL+M
Sbjct: 346 G--KLKSGEVDMVIGTHALLEDDVEFNNLGMVVTDEQHRFGVKQRSKLYNKNNNIDVLVM 403

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L+  GD+DIS I + P GRK I T  +  N  + V       + +G + Y
Sbjct: 404 TATPIPRTLALSLYGDLDISTIDKLPPGRKKIDTFSVKENERNRVYNFALKKIKQGAQVY 463

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP +EE +E N +SV + +  L + + ++  + I+HG+M    K+ +M+ FK G  ++
Sbjct: 464 IVCPLVEENEELNVKSVEKLYMELKDKYFNNVEVEILHGKMPSKSKDEIMERFKMGKTEV 523

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LI+TTVIEVG++V +A+++IIE+AE FGL+QLHQLRGRVGRG++ S CIL+ +       
Sbjct: 524 LISTTVIEVGVNVPNATLMIIESAERFGLSQLHQLRGRVGRGDKKSYCILITNSSNDIT- 582

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ ++  + DGF IAEEDLK R  GEI G  Q G   F+I+       +   A K+AK
Sbjct: 583 KQRMDIITKSNDGFFIAEEDLKLRGSGEIFGFNQHGENGFIISDVINDYGIFRNANKEAK 642

Query: 665 HILTQD 670
            ++  +
Sbjct: 643 ILIKSE 648


>gi|264680588|ref|YP_003280498.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni CNB-2]
 gi|262211104|gb|ACY35202.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni CNB-2]
          Length = 725

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 231/673 (34%), Positives = 350/673 (52%), Gaps = 35/673 (5%)

Query: 33  CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI 92
                 TR IDL  + P  + D      +    +   V I   ++ HS  QL+ RR  K+
Sbjct: 42  LQKMGLTRDIDLALHLPLRYEDETRIVALKNARDGETVQIEATVT-HSEVQLRPRRMLKV 100

Query: 93  LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN 152
            ++DG+    L FF       K +   G ++ + G++K       M+HP +     +   
Sbjct: 101 TVDDGSSTCLLTFFSFYPSQQKTM-APGARLRIRGEVKGGFWGRQMMHPAFRVAGGELPT 159

Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD----LLQKKSF------PSI 202
              +  VY     L     ++ I  AL R   L E +       + Q            +
Sbjct: 160 --ALTPVYPATASLPQAYLRRAIASALLRAD-LSETLPPGQSPPIAQFYGQNGLQPAYDL 216

Query: 203 AEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258
             A   +H+P          + + PA +RL  +ELLA Q++    +++  +     +  +
Sbjct: 217 RNALIFLHHPTPDVALVTLEDHSHPAWQRLKAEELLAQQLSQYEAKRERARLRAPVLRPQ 276

Query: 259 GKIA---QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
             +A   Q+ L  +PF  T +Q+  + +I  DM ++  M R+LQGDVGSGKT+VA ++  
Sbjct: 277 AGMADLTQQFLAQLPFGLTGAQQRVVGEIRADMERRIPMHRLLQGDVGSGKTVVAALSAV 336

Query: 316 AAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           A +EAG Q  +MAP  ILA+QH+     +++         V  + G   +  R   L  +
Sbjct: 337 ACIEAGWQCALMAPTEILAEQHFGKLVGWLEPILAPLGKKVAWLAGAQKKKERAAMLALV 396

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMT 427
             G+A +++GTHA+ Q+ +Q+  L L ++DEQHRFGV QRL L QK       PH+L+M+
Sbjct: 397 ESGEAALVVGTHAVIQEQVQFKNLALAVIDEQHRFGVAQRLALRQKLAATGMEPHLLMMS 456

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL ++   D+D+S I E P GR PI T +I  +R DEVIER+   ++ G++ YW
Sbjct: 457 ATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLISDSRKDEVIERIGAQVASGRQVYW 516

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +CP IEE +  +  +       L E      + ++H RM   +K++VM+ F  G   +L+
Sbjct: 517 VCPLIEESEALDLSNATATHEYLSEMLPGVMVGLLHSRMPTAEKKAVMELFSAGVMGVLV 576

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY----HPPLSK 602
           +TTVIEVG+DV +AS+++IE++E FGL+QLHQLRGRVGRG   S+C+LLY    +  LS 
Sbjct: 577 STTVIEVGVDVPNASLMVIEHSERFGLSQLHQLRGRVGRGAAASACVLLYSVNDNGRLSD 636

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               RL  +  T DGF IA  DL+ R  GE LG +QSG P    A  E    LL+ AR+ 
Sbjct: 637 TGKERLRAMAETNDGFEIARRDLEIRGPGEFLGARQSGAPMLRFADLEQDVMLLDWAREL 696

Query: 663 AKHILTQDPDLTS 675
           A  +L Q P L +
Sbjct: 697 APLMLEQFPALAA 709


>gi|168188107|ref|ZP_02622742.1| ATP-dependent DNA helicase RecG [Clostridium botulinum C str.
           Eklund]
 gi|169294058|gb|EDS76191.1| ATP-dependent DNA helicase RecG [Clostridium botulinum C str.
           Eklund]
          Length = 673

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 240/662 (36%), Positives = 370/662 (55%), Gaps = 24/662 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
           +  + + +G+G K    L++       N    +DLL Y P  +   +Y   IS+I+ E  
Sbjct: 4   YDDVVSLKGIGPKTKELLNQ------CNIYNILDLLLYFPRDYDKAYYCEDISKITNEDK 57

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLL--FFYRKTEMLKNVFFEGRKITVTG 127
           V I   +         +R      +      I     +F +K   +KN F   ++  + G
Sbjct: 58  VLIKAKVKNIKKDAYVRRNMIISTVEFIKNNIVFKGKWFNQK--YIKNKFIVNKEYFIFG 115

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           +++  KN I   +P  + +    +N   +   YSL   ++   F+  I   L  + +L E
Sbjct: 116 RVQLEKNNITFTNPTIVDNPESFLN---LIPKYSLKGSITNKFFQNTIKHILENIDIL-E 171

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +   +L K S  S+ EA   IHNP   K  E     + RL + EL    + LL+++ Q+
Sbjct: 172 NLPSTILNKYSLISLDEAIRNIHNPTGVKSLEEA---KNRLKFQELFTYSLKLLMLK-QY 227

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           KK  G+   +  +  + +  +IPF+ T SQ   I++IL D  +   M R++QGDVGSGKT
Sbjct: 228 KKSKGVGFKISDE-LKILKDSIPFNLTNSQNKVIREILIDEKRDIPMNRLVQGDVGSGKT 286

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VALI++   V+ G Q  +MAP  ILA QHY    +  ++  I +E++TG     H+ + 
Sbjct: 287 IVALISIFNVVKNGYQGCLMAPTEILANQHYTQALELFKDFNIAIELLTG--STKHKDEV 344

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             R+  G   +IIGTHAL +D +++ KL +V+ DEQHRFGV+QR KL  K     VL+MT
Sbjct: 345 KNRLKSGSIDLIIGTHALLEDDVEFSKLGMVVTDEQHRFGVKQRSKLYNKNNNIDVLVMT 404

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL L+  GD+DIS I E P GRK + T  +     + +       +  G + Y 
Sbjct: 405 ATPIPRTLALSIYGDLDISSIDELPPGRKKVDTYSVNDRARNRIYNFALKEIYNGAQVYI 464

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP +EE ++ N +SV + +  L E +     IAI+HG+MS  +K+ +M+ FKNG  K+L
Sbjct: 465 VCPLVEENEDLNIKSVEKLYIELKEKYFKDIEIAILHGKMSSKEKDDIMNKFKNGKTKVL 524

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           I+TTVIEVG++V +A+++IIENAE FG++QLHQLRGRVGRG++ S CIL+ +   S+ + 
Sbjct: 525 ISTTVIEVGVNVPNATLMIIENAERFGISQLHQLRGRVGRGDKKSYCILITNSS-SEITK 583

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R++V+  + DGF IAEEDLK R  GEI G  Q G   F+I+       +L+IA K+A++
Sbjct: 584 QRMNVITKSNDGFFIAEEDLKLRGSGEIFGFNQHGEDGFIISNIVDDYKILKIANKEARN 643

Query: 666 IL 667
           ++
Sbjct: 644 LI 645


>gi|295675566|ref|YP_003604090.1| ATP-dependent DNA helicase RecG [Burkholderia sp. CCGE1002]
 gi|295435409|gb|ADG14579.1| ATP-dependent DNA helicase RecG [Burkholderia sp. CCGE1002]
          Length = 762

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 252/692 (36%), Positives = 374/692 (54%), Gaps = 35/692 (5%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ 85
            L+K+        TR IDL+ + P  + D      I  +    +    G +   +    +
Sbjct: 82  KLAKL------GLTRDIDLVLHLPMRYEDETSLTPIGHLLPGGVAQTEGVVFD-NEIAYR 134

Query: 86  KRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
            RR   + L D  G E+ L F       +K +   G ++ V G ++     + MVHP   
Sbjct: 135 PRRQLLVKLRDAEGDELVLRFLNFYGSQVKQM-APGARLRVRGDVRGGFFGMEMVHPTVR 193

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK----DLLQKKSFP 200
             +        +  VY    G+S    +K I  AL+R   LPE +        L+    P
Sbjct: 194 VVDEDTPLPQALTPVYPSTAGVSQAYLRKAIDNALARTS-LPELLPAPVARAFLEPLGVP 252

Query: 201 SIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
           ++ +A   +H+P    D     + T PA  R+ ++ELLA Q++L     + +      + 
Sbjct: 253 ALMDAVRTLHHPGAQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHDERRNRAAPAMP 312

Query: 257 V-----EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                 E  +  ++L+ +PFS T +Q+    +I  D++Q + M R+LQGDVGSGKT+VA 
Sbjct: 313 RRKLGDESALVARLLKALPFSLTAAQQRVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAA 372

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  
Sbjct: 373 LAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVNVAWLAGSLKTKEKRAAIEAA 432

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APH 422
           A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV QRL L  KA           PH
Sbjct: 433 ALGTAQLVIGTHAIIQDAVEFARLGLVIVDEQHRFGVAQRLALRAKAQGAADGASDFQPH 492

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R +EVI R++     G
Sbjct: 493 QLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTG 552

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F    
Sbjct: 553 RQVYWVCPLIEESETLQLQTAVETYETLVAALPELKVGLVHGRLAPAEKATVMDAFSRNE 612

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS
Sbjct: 613 IQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLS 672

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
             +  RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  +    L+E AR+
Sbjct: 673 MTARARLQTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLQNDQHLIEPARE 732

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            A  +L Q PD+  V     R L    QY +A
Sbjct: 733 AAATLLDQYPDV--VLQHLARWLGAREQYLKA 762


>gi|134093582|ref|YP_001098657.1| ATP-dependent DNA helicase RecG [Herminiimonas arsenicoxydans]
          Length = 770

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 246/672 (36%), Positives = 369/672 (54%), Gaps = 22/672 (3%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYISQHSSFQLQKRRPYKIL 93
                 +D + + P  + D      ISE      R V + G ++       + RR   + 
Sbjct: 101 LGLRSDMDKVLHLPLRYEDETEIRSISEAGFIFGRSVQVEGVVTACE-VAFRPRRQLVVT 159

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           ++D +G++ + F       +K +  EG ++   G+++       MVHP Y          
Sbjct: 160 ISDDSGQLVMRFLNFYGSQVKQM-AEGNRVRARGEVRHGFFGAEMVHPSYKMVTEGAPLP 218

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
             +  VY    GLS  L +K I++A++R+    + + + L       S   A  ++HNP 
Sbjct: 219 SALTPVYPAGEGLSQTLLRKTIIDAMARIE-WRDTLSEQLRSSLDLMSFEPAVRLLHNPP 277

Query: 214 KAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
              D     + +  A  R+ +DELLA Q+++   +   +++    +   GK+++  L+ +
Sbjct: 278 PDIDESVLADRSHAAWVRMKFDELLAQQLSMKRAQIARREKGAAVLPTIGKLSKAFLKQL 337

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PFS T +Q+  ++++  D+ Q   M R+LQGDVGSGKT+VA IA A A+++G QAV+MAP
Sbjct: 338 PFSLTAAQQRVLEEVRADLKQSFPMQRLLQGDVGSGKTVVAAIAAAQAIDSGFQAVLMAP 397

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA QH+  I  + +   + V  +TG++ +  + +A  RI  G A +IIGTHAL Q+ 
Sbjct: 398 TEILADQHFRKIAGWMEPLGVNVAWLTGSLKKKEKLEAKARIESGVAQLIIGTHALIQED 457

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLT----------QKATAPHVLLMTATPIPRTLVLTS 439
           +Q+ KL LVIVDEQHRFGV QRL L            +   PH L+M+ATPIPRTL +T 
Sbjct: 458 VQFSKLGLVIVDEQHRFGVGQRLVLRNKGLDASAAAAQQKIPHQLMMSATPIPRTLAMTY 517

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+++S I E P GR PI T +I  NR DEVIER+     EG++ YW+CP IEE +   
Sbjct: 518 YADLEVSVIDELPPGRTPIVTRVIDQNRRDEVIERVHAAALEGRQVYWVCPLIEESEALQ 577

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  +   +L        + ++HGRM   DK+ VMD+F  G   +L+ATTVIEVG+DV 
Sbjct: 578 LQTATDTHQTLVAALPDLQVGLVHGRMKPADKQQVMDAFTRGDIHVLVATTVIEVGVDVP 637

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +AS+++IE+AE FGL+QLHQLRGRVGRG   S C+LLY  PL   +  RL +++ + DGF
Sbjct: 638 NASLMVIEHAERFGLSQLHQLRGRVGRGSTASVCLLLYQGPLGMVAKQRLRIMRESTDGF 697

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL+ R  GE LG +QSG      A  E    L++ AR  A+ +L  DP   +V  
Sbjct: 698 EIARKDLEIRGPGEFLGARQSGQAMLRFADLETDQWLVDRARDLAQTLLRDDP--ATVGA 755

Query: 679 QSIRILLYLYQY 690
              R L     Y
Sbjct: 756 HLARWLGAREDY 767


>gi|229552461|ref|ZP_04441186.1| DNA helicase RecG [Lactobacillus rhamnosus LMS2-1]
 gi|258539832|ref|YP_003174331.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus Lc 705]
 gi|229314198|gb|EEN80171.1| DNA helicase RecG [Lactobacillus rhamnosus LMS2-1]
 gi|257151508|emb|CAR90480.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus Lc 705]
          Length = 679

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/684 (31%), Positives = 361/684 (52%), Gaps = 23/684 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L  P+    GVG K    L+ +            D+LFY P  + D      ++E +++
Sbjct: 2   ALTDPVRVLPGVGPKREEGLASL------GIHTVGDVLFYFPFRYDDL-KVKDLAEAADQ 54

Query: 68  RIVTITGYISQHSSFQLQK--RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
             +TI G +            R    + L      I + F+ +    LK+ F  G +  V
Sbjct: 55  EKLTIKGVVVADPVISRFGPHRSRVNVKLQVERSVILVTFYNQ--PWLKDRFQMGDEAAV 112

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV- 184
            GK    +  +  +        +Q  + P + A+Y++   + +    ++I  A +R    
Sbjct: 113 FGKWDAQRRSLTGM----KILATQSQDQPSMAAIYTVNKNVRMGTLLELIKAAWARDHQN 168

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + + I   +       S  +  + +H P   ++      AR    + E    Q+ +  ++
Sbjct: 169 IHDLIPASIRAHYRLMSDEQLVHGMHFPDTQQE---AKAARRSGVFREFFLFQLQIQALK 225

Query: 245 K-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +       G+ I  + +  + ++  +PFS T +Q+  + +I  DM + N M R+LQGDVG
Sbjct: 226 QLNDNANNGLAIPYDNQALRALIATLPFSLTNAQKRVVNEICADMRRPNHMNRLLQGDVG 285

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA I + AAV AG QA +M P  +LA+QH+  ++    +  + + ++TG+     
Sbjct: 286 SGKTIVAAIVLYAAVTAGYQAALMVPTEVLAEQHFAKLEALFADFPVKLGLLTGSTTAKK 345

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  +  G  ++IIGTHAL Q  + +  L LV++DEQHRFGV QR  L +K   P +
Sbjct: 346 RREMLAELRDGTLNLIIGTHALIQKGVDFKALGLVVIDEQHRFGVNQRKILQEKGQKPDL 405

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I E PAGRKPI T  +  N++ +V   ++  +  G 
Sbjct: 406 LSMTATPIPRTLAITAYGEMDVSTIDELPAGRKPITTTWLRKNQVGQVYRLIRSQVQAGS 465

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGT 541
           + + I P I E ++ + ++  + F  + +       +A++HG+M   +K+ +M +F +G 
Sbjct: 466 QVFAITPLIAESEKVDLQNAEQLFADMQKAVGDVGQVALLHGKMKPDEKDQIMRAFSHGD 525

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTV+EVG+DV +A+++ I +A+ FGL+QLHQLRGRVGRG + + C+L+  P  +
Sbjct: 526 IAVLVSTTVVEVGVDVPNATVMAIFDADRFGLSQLHQLRGRVGRGNKAAQCLLIADPK-N 584

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    R+ ++  T DGFL+A++DL+ R  G+I G KQSG+P+F +A P      LE+A++
Sbjct: 585 EQGIARMQIMTKTNDGFLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEVAQQ 644

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
               I   DP L +   Q +   L
Sbjct: 645 IVAKIFKTDPHLLAPEHQPLAAYL 668


>gi|299532849|ref|ZP_07046236.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni S44]
 gi|298719073|gb|EFI60043.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni S44]
          Length = 701

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 231/673 (34%), Positives = 351/673 (52%), Gaps = 35/673 (5%)

Query: 33  CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI 92
                 TR IDL  + P  + D     ++    +   V I   ++ HS  QL+ RR  K+
Sbjct: 18  LQKMGLTRDIDLALHLPLRYEDETRIVRLKNARDGETVQIEATVT-HSEVQLRPRRMLKV 76

Query: 93  LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN 152
            ++DG+    L FF       K +   G ++ + G++K       M+HP +     +   
Sbjct: 77  TVDDGSSTCLLTFFSFYPSQQKTM-APGARLRIRGEVKGGFWGRQMMHPAFRVAGGELPT 135

Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD----LLQKKSF------PSI 202
              +  VY     L     ++ I  AL R   L E +       + Q            +
Sbjct: 136 --ALTPVYPATASLPQAYLRRAIASALLRAD-LSETLPPGQSPPIAQFYGQNGLQPAYDL 192

Query: 203 AEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258
             A   +H+P          + + PA +RL  +ELLA Q++    +++  +     +  +
Sbjct: 193 RNALIFLHHPTPDVALVTLEDHSHPAWQRLKAEELLAQQLSQYEAKRERARLRAPVLRPQ 252

Query: 259 GKIA---QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
             +A   Q+ L  +PF  T +Q+  + +I  DM ++  M R+LQGDVGSGKT+VA ++  
Sbjct: 253 AGMADLTQQFLAQLPFGLTGAQQRVVGEIRADMERRIPMHRLLQGDVGSGKTVVAALSAV 312

Query: 316 AAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           A +EAG Q  +MAP  ILA+QH+     +++         V  + G   +  R   L  +
Sbjct: 313 ACIEAGWQCALMAPTEILAEQHFGKLVGWLEPILAPLGKKVAWLAGAQKKKERAAMLALV 372

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMT 427
             G+A +++GTHA+ Q+ +Q+  L L ++DEQHRFGV QRL L QK       PH+L+M+
Sbjct: 373 ESGEAALVVGTHAVIQEQVQFKNLALAVIDEQHRFGVAQRLALRQKLAATGMEPHLLMMS 432

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL ++   D+D+S I E P GR PI T +I  +R DEVIER+   ++ G++ YW
Sbjct: 433 ATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLISDSRKDEVIERIGAQVASGRQVYW 492

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +CP IEE +  +  +       L E      + ++H RM   +K++VM+ F  G   +L+
Sbjct: 493 VCPLIEESEALDLSNATATHEYLSEMLPGVMVGLLHSRMPTAEKKAVMELFSAGVMGVLV 552

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY----HPPLSK 602
           +TTVIEVG+DV +AS+++IE++E FGL+QLHQLRGRVGRG   S+C+LLY    +  LS 
Sbjct: 553 STTVIEVGVDVPNASLMVIEHSERFGLSQLHQLRGRVGRGAAASACVLLYSVNDNGRLSD 612

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               RL  +  T DGF IA  DL+ R  GE LG +QSG P    A  E    LL+ AR+ 
Sbjct: 613 TGKERLRAMAETNDGFEIARRDLEIRGPGEFLGARQSGAPMLRFADLEQDVMLLDWAREL 672

Query: 663 AKHILTQDPDLTS 675
           A  +L Q P L +
Sbjct: 673 APLMLEQFPALAA 685


>gi|229824775|ref|ZP_04450844.1| hypothetical protein GCWU000182_00124 [Abiotrophia defectiva ATCC
           49176]
 gi|229791104|gb|EEP27218.1| hypothetical protein GCWU000182_00124 [Abiotrophia defectiva ATCC
           49176]
          Length = 681

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/655 (32%), Positives = 357/655 (54%), Gaps = 18/655 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   ++  +G+G K +  L+K+            D++ Y P ++        IS +    
Sbjct: 3   LEESITAIKGIGNKTAALLNKL------GIYTKRDIIKYFPRNYDKYEKITPISSLKNGM 56

Query: 69  IVTITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
              I+   +      Q+ K+      + DG+G+I L +F      +K    +G      G
Sbjct: 57  TAVISAIPASAPILKQMGKKSILICEVTDGSGKIELNWFN--MPFMKTKLSKGVHNIFRG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           ++ +    I +V P  +          +++ +Y L  G++ +L +K I E L  +    +
Sbjct: 115 RVSRNGKFIRIVQPEILTEAEYRRKTEVLQPIYRLTKGVTSNLLRKSIKEVLVEVISGID 174

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
           ++ +++ +  S  S+ +A   IH P   K ++    AR RL +DE     +++  +++  
Sbjct: 175 YLPQNIKKDNSLISLKDALQEIHFP---KSYDTLIEARRRLVFDEFFLFALSIDRLKQGR 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++     +  +       + ++PFS T +Q+   ++I  D++   RM R++QGDVGSGKT
Sbjct: 232 EENGSSYVVEKSSTTVDFISSLPFSLTNAQQKVWEEIENDLTSGFRMNRLVQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           L+A++A     + G Q+ +M P  +LA+QH+E      +   I V ++TG++    R++ 
Sbjct: 292 LLAILACLLMTKNGYQSSVMVPTEVLARQHFESFSTMLEQYGIRVVLLTGSVKGRERKET 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L RI + +A IIIGTHAL Q+ + Y KL LVI DEQHRFGV+QR KL  K   PH+++M+
Sbjct: 352 LSRIENHEADIIIGTHALIQEKVVYDKLALVITDEQHRFGVKQREKLADKGIEPHIMVMS 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +   GD+DIS + E PA R PIK  ++  +      + +   +++G +AY 
Sbjct: 412 ATPIPRTLAVILYGDLDISIVNELPADRLPIKNCVVDEDYRMTAYKFILSEVNKGHQAYI 471

Query: 488 ICPQIEEKKESNFR----SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           ICP +E+ +E++      S  E   SL  +  + I  +HG+M + +K  +M+ F +G   
Sbjct: 472 ICPMVEKSEENDELSDVISYTEELTSLIGN-KAKIKYLHGKMKNDEKNQIMEEFSDGRID 530

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +LI+TTV+EVG++V +A++++IENA+ FGLA LHQLRGR+GRG   S CI +     SK 
Sbjct: 531 ILISTTVVEVGVNVPNATVMMIENADRFGLASLHQLRGRIGRGNAQSYCIFMSG-NTSKE 589

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           +  RL++L  + DGF IAEED+K R  G++ GI+QSG   F +        +L+I
Sbjct: 590 AMERLNILNKSNDGFKIAEEDMKLRGPGDVFGIRQSGEMAFNLGDIIGDADILKI 644


>gi|317498522|ref|ZP_07956816.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894215|gb|EFV16403.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 676

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 224/681 (32%), Positives = 364/681 (53%), Gaps = 15/681 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +   +G+G+K +    ++             L+  +P  ++       ++EI   + V+I
Sbjct: 7   IIELKGIGEKSATAFGRL------GIRDVDSLITMYPKYYLTYEDPKDVNEIEIGQRVSI 60

Query: 73  TGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
              I+     Q  KR +       D TG I L+++      LK    +GR    TG    
Sbjct: 61  FVRINSEVHIQYAKRMKIVTCTAKDHTGTIMLVWYN--MPYLKKQLHQGRDYIFTGTPIY 118

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
              RI M HP        +     ++ VY L +GL+  L  K + +    +  +PE++ +
Sbjct: 119 KNGRITMEHPEIFTQEDYEAKQETLQPVYPLTSGLTNKLVSKAVAQTKDYIFHIPEYLPQ 178

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           ++L +       +A   IH P      E    A++RL +DE      A+ ++      + 
Sbjct: 179 NILDQYQPMEYHQAIWNIHFPESK---EQLIKAKKRLIFDEFFIFIAAMHMITSGEDLKE 235

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                   K A+++++N+P+  T +Q+ A+ ++ +DM+    M R++QGDVGSGKT++A+
Sbjct: 236 EGYKIGVCKEAKELVKNLPYELTTAQKRALNEMAKDMASGKVMNRLVQGDVGSGKTILAV 295

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           I +    +AG Q V+MAP  +LA QHYE   +  ++  I + ++TG+     +R+  ++I
Sbjct: 296 ILLLMCAKAGYQGVLMAPTEVLAAQHYESFTELLESYDIKIALLTGSTKTKEKRETYQKI 355

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G+  I+IGTHA+ QD ++Y KL LVI DEQHRFGV+QR  L+ K   PHVL+M+ATPI
Sbjct: 356 KDGEVDIVIGTHAVIQDKVEYNKLALVITDEQHRFGVRQRESLSLKGKKPHVLVMSATPI 415

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL +   GD+D+S I E PA R PIK  ++  +        ++  +S+G++ Y ICP 
Sbjct: 416 PRTLAIILYGDLDVSIIDELPAERLPIKNCVVNTSYRPTAYRFIEKQVSQGRQVYIICPM 475

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +EE +     +V++    L   F  S+ I  +HG+M   DK+ VMD F  G   +L++TT
Sbjct: 476 VEESETMEGENVIQYAQMLRSQFAPSVRISYLHGKMKAADKQKVMDDFSEGKIDVLVSTT 535

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRG   S CI +      K +  RL 
Sbjct: 536 VVEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGGYQSYCIFMTSSKK-KETMQRLE 594

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           VL  + DGF IA EDLK R  G+  G++QSGM  F++A    +  +++ A    K +   
Sbjct: 595 VLNKSNDGFYIANEDLKLRGPGDFFGVRQSGMMDFVLADIYTNADIMKQAADAVKQLEES 654

Query: 670 DPDLTSVRGQSIRILLYLYQY 690
             D ++++   +   + L + 
Sbjct: 655 GFDFSNLKNSRLEKQIGLARN 675


>gi|71083684|ref|YP_266404.1| ATP-dependent DNA helicase recG [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062797|gb|AAZ21800.1| ATP-dependent DNA helicase recG [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 683

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 256/688 (37%), Positives = 406/688 (59%), Gaps = 18/688 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L A L+   GVGKK    L K             DLL+  P S+ DR    KI ++    
Sbjct: 10  LLADLTKLNGVGKKTMEILKK------KKVNNIFDLLWRLPKSYTDRTLVSKICDLQIGV 63

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I TI   +     F   +  P ++   D TG+I  +FF      ++ +     ++T++GK
Sbjct: 64  IQTIR-IVPLKYQFPRVRNLPNRVNCIDETGKIDCIFFNSHEGYVRKILPLNEEVTISGK 122

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           I   K R  + +P YI  +S  +    I+  YSL  G++   + KII + L  LP+LPEW
Sbjct: 123 IGNYKGRYQITNPTYISQDSSLIEN--IDNKYSLTEGITEKTYNKIINQILKNLPILPEW 180

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
            +KD+L+  +  S  E+   +H+P+  +++   S   +RLAYDE+LA  +    +RK+ K
Sbjct: 181 HDKDILKIFNNESWNESIIKLHDPKNIENY--KSDFYKRLAYDEILASFLVNSEIRKKIK 238

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K   I  N   K  + I+  + F+ T  Q+ ++ DI +D++ K++M R+LQGDVGSGKT+
Sbjct: 239 KIKKISKNFSEKAHKNIVNKLNFTLTNDQKISLGDINKDLNSKSKMFRLLQGDVGSGKTI 298

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VALI+    + +G Q  +MAP  ILA+QHY  + K      I +E+++     + +++ +
Sbjct: 299 VALISSLNVINSGFQVALMAPTEILARQHY-TLAKKLFPKDIKIELLSSKSENSEKKRII 357

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427
           + + + +  ++ GTHA+FQ  I +  L  +I+DEQH+FGV+QR  L  +      VLLM+
Sbjct: 358 KNLENNEIQMVFGTHAIFQKKIIFANLGYIIIDEQHKFGVRQRKLLSDKGGDNCDVLLMS 417

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL ++  GD+D+S I EKP+ RK +KT     ++ID+VI  +K  + EG + +W
Sbjct: 418 ATPIPRTLTMSVYGDMDVSIIKEKPSNRKEVKTYSKLESKIDDVINFVKKEIKEGNQIFW 477

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +CP IEE K+ + +S V ++  L+E F + +A++HG++++ +KE +++ F N    +L++
Sbjct: 478 VCPLIEESKKLDHQSSVTKYKFLNEIFPNKVALLHGKIANEEKEEILNKFLNKKYSILVS 537

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TT+IEVGID  +A++IIIENA  FGL+QLHQLRGRVGRG + +SCIL++   LS N+  R
Sbjct: 538 TTIIEVGIDFPNANVIIIENANKFGLSQLHQLRGRVGRGTKQASCILMFKSNLSVNAKKR 597

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +++LKN+ DGF I+EED+K R  G++LG KQSG+  F +A P  ++ L  +A K  K I 
Sbjct: 598 INILKNSNDGFEISEEDMKLRGFGDLLGFKQSGIKNFRLADPIQNEDLFLMAEKQIKKI- 656

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
               +L +   +  + LL LY   +   
Sbjct: 657 ----ELENTDIKKYKALLKLYDQADIIN 680


>gi|167765566|ref|ZP_02437630.1| hypothetical protein CLOSS21_00060 [Clostridium sp. SS2/1]
 gi|167712751|gb|EDS23330.1| hypothetical protein CLOSS21_00060 [Clostridium sp. SS2/1]
 gi|291559032|emb|CBL37832.1| ATP-dependent DNA helicase RecG [butyrate-producing bacterium
           SSC/2]
          Length = 676

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 224/679 (32%), Positives = 363/679 (53%), Gaps = 15/679 (2%)

Query: 15  TFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74
             +G+G+K +    ++             L+  +P  ++       ++EI   + V+I  
Sbjct: 9   ELKGIGEKSATAFGRL------GIRDVDSLITMYPKYYLTYEDPKDVNEIEIGQRVSIFV 62

Query: 75  YISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
            I+     Q  KR +       D TG I L+++      LK    +GR    TG      
Sbjct: 63  RINSEVHIQYAKRMKIVTCTAKDHTGTIMLVWYN--MPYLKKQLHQGRDYIFTGTPIYKN 120

Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
            RI M HP        +     ++ VY L +GL+  L  K + +    +  +PE++ +++
Sbjct: 121 GRITMEHPEIFTKEDYEAKQETLQPVYPLTSGLTNKLVSKAMAQTKDYIFHIPEYLPQNI 180

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
           L +       +A   IH P      E    A++RL +DE      A+ ++      +   
Sbjct: 181 LDQYQPMEYHQAIWNIHFPESK---EQLIKAKKRLIFDEFFIFIAAMHMITSGEDLKEEG 237

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
                 K A+++++N+P+  T +Q+ A+ ++ +DM+    M R++QGDVGSGKT++A+I 
Sbjct: 238 YKIGVCKEAKELVKNLPYELTTAQKRALNEMAKDMASGKVMNRLVQGDVGSGKTILAVIL 297

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +    +AG Q V+MAP  +LA QHYE   +  ++  I + ++TG+     +R+  ++I  
Sbjct: 298 LLMCAKAGYQGVLMAPTEVLAAQHYESFTELLESYDIKIALLTGSTKAKEKRETYQKIKD 357

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G+  I+IGTHA+ QD ++Y KL LVI DEQHRFGV+QR  L+ K   PHVL+M+ATPIPR
Sbjct: 358 GEVDIVIGTHAVIQDKVEYNKLALVITDEQHRFGVRQRESLSLKGEKPHVLVMSATPIPR 417

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL +   GD+D+S I E PA R PIK  ++  +        ++  +S+G++ Y ICP +E
Sbjct: 418 TLAIILYGDLDVSIIDELPAERLPIKNCVVNTSYRPTAYRFIEKQVSQGRQVYIICPMVE 477

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           E +     +V++    L   F  S+ I  +HG+M   DK+ VMD F  G   +L++TTV+
Sbjct: 478 ESETMEGENVIQYAQMLRSQFAPSVRISYLHGKMKAADKQKVMDDFSEGKIDVLVSTTVV 537

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           EVG++V +A+++++ENAE FGLAQLHQLRGRVGRG   S CI +      K +  RL VL
Sbjct: 538 EVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGGYQSYCIFMTSSKK-KETMQRLEVL 596

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
             + DGF IA EDLK R  G+  G++QSGM  F++A    +  +++ A    K +     
Sbjct: 597 NKSNDGFYIANEDLKLRGPGDFFGVRQSGMMDFVLADIYTNADIMKQAADAVKQLEESGF 656

Query: 672 DLTSVRGQSIRILLYLYQY 690
           D ++++   +   + L + 
Sbjct: 657 DFSNLKNSRLEKQIGLARN 675


>gi|156740619|ref|YP_001430748.1| ATP-dependent DNA helicase RecG [Roseiflexus castenholzii DSM
           13941]
 gi|156231947|gb|ABU56730.1| ATP-dependent DNA helicase RecG [Roseiflexus castenholzii DSM
           13941]
          Length = 842

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 241/736 (32%), Positives = 370/736 (50%), Gaps = 61/736 (8%)

Query: 2   RPSF-LNPL--FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR 58
           RP     PL   +PL    G+ ++      ++            DLL++ P  + D   R
Sbjct: 111 RPDAPARPLTPDSPLDDVPGITRQMVQSFRRL------GVRTVRDLLYHFPHRYDDFTSR 164

Query: 59  PKISEISEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVF 117
             I+E+    + T+   +    +  ++       +L+ D TG + ++FF  +   L   F
Sbjct: 165 KTIAELQPGAVETVIAEVLDARTLPMKSGGSRLDVLVGDETGTLKVVFF--RQPWLAQRF 222

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYI-FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
             G K+ ++GKI        M  P +  F +   ++   +  V+ L  GL     + +I 
Sbjct: 223 LVGTKVVLSGKIGVYDGLRQMASPEWQPFTDDDLIHVGRLVPVHPLTRGLVERSARALIK 282

Query: 177 EALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           + + R  P+L + +   + ++     + +A   IH P      E     R RL +DE L 
Sbjct: 283 QVVDRCAPMLEDHLPPAVRERTGLMPLPQAIAQIHFPDSRDMLEQA---RRRLGFDEFLF 339

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q+ +L  +  ++ + G  I     + +  LR +PF  T +Q  AI++I  DM++   M 
Sbjct: 340 IQLGVLQRKMIWQAQRGYAITRRDDVHEAFLRRLPFELTGAQVRAIEEIFADMARPVPMA 399

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK------------- 342
           R+LQGDVGSGKT+VA  A   A+ +G QA +MAP  ILA+QHY  ++             
Sbjct: 400 RLLQGDVGSGKTVVAAAAALQAIASGYQAALMAPTEILAEQHYRGLRALLGNVPVPRDQR 459

Query: 343 ----------------------------KYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                                              + V ++TG++    RR+ LE IA G
Sbjct: 460 QVSAEDDLDPEQRERLEEIKRILGMSGDDDLDGRGVRVALLTGSLGAKERRRVLEGIARG 519

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              +I+GTHAL  +S+QY  L L IVDEQHRFGV+QR +L  K   PH+L+MTATPIPRT
Sbjct: 520 DIDLIVGTHALITESVQYAALGLAIVDEQHRFGVEQRQRLKDKGYNPHMLVMTATPIPRT 579

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L LT  GD+D+S + E P GR+ IKT  I     D+    ++  +++G++A+ ICP +EE
Sbjct: 580 LTLTIYGDLDVSVLDELPPGRQEIKTRWITTVERDKAYRHIRREVAKGRQAFVICPLVEE 639

Query: 495 KKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            ++ +  S  E   +L         +A+IHG+M   +K++VM +F+N    +L+AT VIE
Sbjct: 640 SEKVDLPSAEEMHATLSRDVFPDLRVALIHGKMLPREKDAVMIAFRNHEYDILVATAVIE 699

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VGIDV +A+ I+IE AE FGLAQLHQ RGRVGRG   S CIL+     ++ +  R+  ++
Sbjct: 700 VGIDVPNATTILIEGAERFGLAQLHQFRGRVGRGVHQSYCILVCDKEQNEVTRQRMEAME 759

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
              DGF +AE DL  R  GE  G +QSG P   +AQ      LL+ A ++A+ IL  DP 
Sbjct: 760 TISDGFRLAEIDLHLRGPGEFFGTRQSGTPDLKVAQLT-DVRLLQTAYREAQKILADDPQ 818

Query: 673 LTSVRGQSIRILLYLY 688
           L       +R  +  +
Sbjct: 819 LERPDHALLRAKMDAF 834


>gi|282898424|ref|ZP_06306414.1| hypothetical protein CRD_02961 [Raphidiopsis brookii D9]
 gi|281196590|gb|EFA71496.1| hypothetical protein CRD_02961 [Raphidiopsis brookii D9]
          Length = 829

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 233/681 (34%), Positives = 389/681 (57%), Gaps = 29/681 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L     +G K +  L ++            DLLFY+P  +ID   +  I E+     VTI
Sbjct: 136 LRDLAEIGIKRAENLYRL------ELETVRDLLFYYPRDYIDYARQVNIRELKGGETVTI 189

Query: 73  TGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVFFEGR 121
            G + + + F   K +   IL   L D TG++ +  FY  +          LK  +  G 
Sbjct: 190 IGEVRRCNCFTSPKNQKLSILELMLKDQTGQVKVSRFYAGSRFSSKGWQEGLKRRYTPGT 249

Query: 122 KITVTGKIKKLKNRIIMVHPHY-IFHNSQDV----NFPLIEAVYSLPTGLSVDLFKKIIV 176
            +   G +K  K  + + +P   +  NS D         +  +Y L  G+  +  ++ ++
Sbjct: 250 LVAACGLVKPSKYGLTLDNPEIEVLANSGDAIDSFTIGRVVPIYGLTEGVVANAVRQAVM 309

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
             L  +  L + +   L +K +   + +A   IH P+   D +    A+ RL +DE    
Sbjct: 310 AVLPSVKSLQDPLPPGLRKKYNLIELKQAIPNIHFPQ---DSDTLKMAKRRLVFDEFFYL 366

Query: 237 QIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ LL  +KQ K     PI    GK+  +    +PF  TK+QE  I DIL D+ +   M 
Sbjct: 367 QVGLLQRQKQAKANQTGPILAPSGKLLDQFHEILPFKFTKAQERVINDILNDLQKSTAMN 426

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA++A+ AA+++G QA +MAP  +LA+QHY  +  +     + VE++
Sbjct: 427 RLVQGDVGSGKTVVAVVAILAAIQSGYQAALMAPTEVLAEQHYRKLVTWFNLLHLPVELL 486

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG+   + RR+   ++  G+  +++GTHAL QD +++++L LV++DEQHRFGV+QR KL 
Sbjct: 487 TGSTKTSKRREIHSQLETGELPLLVGTHALIQDKVKFHRLGLVVIDEQHRFGVEQRAKLQ 546

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK   PHVL MTATPIPRTL LT  GD+D+S+I E P GR+ IKT ++  ++  +  + +
Sbjct: 547 QKGEQPHVLTMTATPIPRTLALTVHGDLDVSQIDELPPGRQQIKTSLLTGHQRPQAYDLI 606

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESV 533
           +  +++G++ Y + P +EE ++ + RS ++ +  L E       + ++HG+M+  +KE  
Sbjct: 607 RREIAQGRQVYVVLPLVEESEKLDLRSAIDEYQKLQETVFPNFQVGLLHGKMTSTEKEEA 666

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           ++ F++   ++L++TTV+EVG+DV +A++++IE+AE FGL+QLHQLRGRVGRG + S C+
Sbjct: 667 INKFRDNQTQILVSTTVVEVGVDVPNATVMLIEHAERFGLSQLHQLRGRVGRGMDQSYCL 726

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+     + ++  RL VL+ ++DGF I+E D++ R  GE++G +QSG+    +A     +
Sbjct: 727 LM-SSSRNPDAQQRLKVLEQSQDGFFISEMDMRFRGPGEVMGTRQSGVADLTLASLVEDE 785

Query: 654 SLLEIARKDAKHILTQDPDLT 674
            +L +AR+ A+ ++  D  L 
Sbjct: 786 EVLLLARQAAEKVIDMDVSLE 806


>gi|160892744|ref|ZP_02073534.1| hypothetical protein CLOL250_00275 [Clostridium sp. L2-50]
 gi|156865785|gb|EDO59216.1| hypothetical protein CLOL250_00275 [Clostridium sp. L2-50]
          Length = 676

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 223/660 (33%), Positives = 352/660 (53%), Gaps = 20/660 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L   ++  +G+G+K +  L+K+        +   DL+ Y+P ++I       I +I  +
Sbjct: 2   ELKDKVTCIKGIGEKTAGNLAKL------GISTVSDLIHYYPRTYITYMDPVDIQDIQAD 55

Query: 68  RIVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
               ++  I  +S  +++K R + I      D TG I L +F      L+N F  G +  
Sbjct: 56  ERQAVSVTI--NSRVEVKKLRGFSIATAYAKDYTGTIKLTWFN--CPFLRNYFHIGDRYI 111

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
             G++K       M  P Y             + VY    G++    +K +   L  +  
Sbjct: 112 FVGEVKYKNGMYTMSQPEYYTVPQYQEILKEWQPVYGCTAGITSKTIQKAVKGTLPLIQT 171

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L ++I +D+  +       EA   IH P      +    A +R+A+DE       +  ++
Sbjct: 172 LSDYIPEDIRDEYDLMRANEAVTHIHFPDTE---DHLRAAIKRVAFDEFYEFIENMHSLK 228

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +    +         +     + ++P+  T +Q  A++DI+ DM+ ++ M R++QGDVGS
Sbjct: 229 EHDTVKYNQAKIPFTEQVTGFIESLPYRLTGAQMDAVRDIMADMNSEHVMNRLVQGDVGS 288

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA IA+ A    G Q VIMAP  +LA QH++ +    +   I V ++TG+M    +
Sbjct: 289 GKTIVAAIALFACATQGYQGVIMAPTEVLANQHFKELTGLFEPYGIHVTLLTGSMTAKEK 348

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R+A + IA  +A +I+GTHAL QD ++Y  L LV+ DEQHRFGV+QR KL+ K   PHVL
Sbjct: 349 REAYQEIAEHRADVIVGTHALIQDKVEYDNLALVVTDEQHRFGVRQREKLSLKGGTPHVL 408

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPRTL +   GD+DIS I E PAGR PIK  ++  +   +    ++  + +G +
Sbjct: 409 VMSATPIPRTLAIIMYGDLDISVINELPAGRIPIKNCVVDESYRPKAQAFIRAEVKKGHQ 468

Query: 485 AYWICPQIEEKKE-SNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGT 541
            Y +CP +EE +   +  +VVE    L +   SS  +A +HG+M+  +K  ++  F    
Sbjct: 469 VYVVCPMVEESEALDDVANVVEYSEDLSQKLDSSIHVAYLHGKMTGDEKNRILTDFYEKK 528

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVGI+  +A+++++ENAE FGLA LHQLRGRVGRG   S CI +     +
Sbjct: 529 VDVLVSTTVIEVGINNPNATVMMVENAERFGLAALHQLRGRVGRGNLQSYCIFISGKK-N 587

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           K    RL+VL ++ DGF IA EDLK+R  G+  GI+QSG   F +     H  +L+ A  
Sbjct: 588 KEVMERLNVLADSNDGFYIAGEDLKRRGPGDFFGIRQSGDVLFKMGDIYKHADMLKAASD 647


>gi|311106511|ref|YP_003979364.1| ATP-dependent DNA helicase RecG [Achromobacter xylosoxidans A8]
 gi|310761200|gb|ADP16649.1| ATP-dependent DNA helicase RecG [Achromobacter xylosoxidans A8]
          Length = 696

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 238/682 (34%), Positives = 358/682 (52%), Gaps = 24/682 (3%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           +G GK  +    K+ N          D + + P  + D      IS++       + G I
Sbjct: 16  KGAGKAMTDTERKLRNL---GLVLPEDFVLHLPLRYEDETRIVPISDLRPGFAGQVEGEI 72

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
           ++ S    + RR     L D +GE+ L +        K V   G+++   G+++      
Sbjct: 73  TK-SEVSYRPRRQLTATLADDSGELQLRWLNFYPSQQKQV-SVGKRLRARGEVRGGLFGR 130

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK 196
            MVHP     N+       +  VY    GL     ++ I +AL R   L + +  +   +
Sbjct: 131 QMVHP--RMTNADAPLPTALTPVYPSTEGLPQLTLRRAIAQALDRAD-LSDTLPDEARAR 187

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P    A   +H P + +      +   PA  R+ +DELLA Q++L   R   + +  
Sbjct: 188 YDLPPFEPAIRALHTPAQGESEQALLDRVHPAWRRIKFDELLAQQLSLAAARAARRVKEA 247

Query: 253 IPINVEGKI---AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
             +    +      K+   +PF  T +QE  +++I  D+++   M R+LQGDVGSGKT+V
Sbjct: 248 ESLPARNEAGGLVAKLYEALPFKLTGAQERVVQEISADLAKPYPMHRLLQGDVGSGKTVV 307

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A IA A A+ +G Q  +MAP  ILA+QH+  +  + Q   + V  ++G++    RR+A  
Sbjct: 308 AAIAAAQAIASGAQVALMAPTEILAEQHFRKLVSWLQPLGVNVAWLSGSLSAKARREAAA 367

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK------ATAPHV 423
             A G   +I+GT AL QD +++++L L IVDEQHRFGV QRL LT+K         PH 
Sbjct: 368 AAADGSVQLIVGTQALIQDHVEFHRLGLSIVDEQHRFGVGQRLALTRKGETVRGRNVPHQ 427

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L M+ATPIPRTL +T   D+D+S I E P GR P+ T ++   R +EVI  +      G+
Sbjct: 428 LNMSATPIPRTLAMTFFADLDVSVIDELPPGRSPVLTKLVSDARREEVIAHIAQAARGGQ 487

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           +AYW+CP +EE +    ++ V+ +  +        I ++HGR+   +K +VM +F++G  
Sbjct: 488 QAYWVCPLVEESEALELQTAVDTYEGMRVDLPDLRIGLVHGRLPQAEKAAVMQAFRDGEV 547

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS+
Sbjct: 548 DLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCVLLYQTPLSQ 607

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL  +  T DGF IA  DL+QR  GE LG +QSGM     A  E   ++ E AR  
Sbjct: 608 VARERLRAMFETSDGFEIARRDLEQRGPGEFLGTRQSGMALLRFADLETDAAIAEDARDA 667

Query: 663 AKHILTQDPDLTSVRGQSIRIL 684
           A  +  + P   +V     R +
Sbjct: 668 AVWLRAEHP--AAVEAHLARWM 687


>gi|49483390|ref|YP_040614.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257425280|ref|ZP_05601705.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257427940|ref|ZP_05604338.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257430573|ref|ZP_05606955.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433334|ref|ZP_05609692.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436176|ref|ZP_05612223.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus M876]
 gi|282903780|ref|ZP_06311668.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905544|ref|ZP_06313399.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908520|ref|ZP_06316350.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910799|ref|ZP_06318602.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914002|ref|ZP_06321789.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918924|ref|ZP_06326659.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924047|ref|ZP_06331723.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus C101]
 gi|283957968|ref|ZP_06375419.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293501035|ref|ZP_06666886.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509994|ref|ZP_06668702.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526582|ref|ZP_06671267.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295427712|ref|ZP_06820344.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297591329|ref|ZP_06949967.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus MN8]
 gi|81651274|sp|Q6GHK8|RECG_STAAR RecName: Full=ATP-dependent DNA helicase recG
 gi|49241519|emb|CAG40205.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271737|gb|EEV03875.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257274781|gb|EEV06268.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278701|gb|EEV09320.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281427|gb|EEV11564.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284458|gb|EEV14578.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus M876]
 gi|282314019|gb|EFB44411.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316734|gb|EFB47108.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322070|gb|EFB52394.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325404|gb|EFB55713.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327582|gb|EFB57865.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330836|gb|EFB60350.1| ATP-dependent DNA helicase recG [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595398|gb|EFC00362.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790117|gb|EFC28934.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920654|gb|EFD97717.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096040|gb|EFE26301.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466938|gb|EFF09456.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus M809]
 gi|295128070|gb|EFG57704.1| ATP-dependent DNA helicase RecG [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576215|gb|EFH94931.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus MN8]
 gi|312438396|gb|ADQ77467.1| DNA helicase RecG [Staphylococcus aureus subsp. aureus TCH60]
 gi|315194113|gb|EFU24506.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 686

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 217/661 (32%), Positives = 362/661 (54%), Gaps = 24/661 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VTI G 
Sbjct: 16  LKGIGPKKIEVLQQL------NIHTVEDLVLYLPTRYEDNTVI-DLNQAEDQSNVTIEGQ 68

Query: 76  ISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
           +          R   K+ ++     I +   +     LK      + ITV GK  ++K  
Sbjct: 69  VYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQE 128

Query: 136 IIMVHPHYIFHNSQDVNFPL-----IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           I       +F NSQ           +E VY +  G+     +  I +AL+ +  + EW+ 
Sbjct: 129 ITGNR---VFLNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDV-TIHEWLT 184

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKK 249
            +L +K    ++    N +H+P+  +D       R   A+ EL   ++ +  L R +   
Sbjct: 185 DELREKYKLETLDFTLNTLHHPKSKEDLLRA---RRTYAFTELFLFELRMQWLNRLEKSS 241

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           +  I I+ +    +  +  +PF  T++Q+S++ +I +D+    RM R+LQGDVGSGKT+V
Sbjct: 242 DEAIEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVV 301

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A I M A   AG Q+ +M P  ILA+QH E +     ++   V ++TG++    R+  LE
Sbjct: 302 AAICMYALKTAGYQSALMVPTEILAEQHAESLIALFGDSM-NVALLTGSVKGKKRKILLE 360

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           ++ +     +IGTHAL QD + ++ + LVI DEQHRFGV QR  L +K    +VL MTAT
Sbjct: 361 QLENRTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTAT 420

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL ++  G++D+S I + P GRKPI T      + D+V+ ++   L +G++AY IC
Sbjct: 421 PIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVIC 480

Query: 490 PQIEEKKE-SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           P IE  +   + ++VV  + SL +++  S + ++HG++S  +K+ VM  F N    +L++
Sbjct: 481 PLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVS 540

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR ++ S C+L+  P  ++    R
Sbjct: 541 TTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK-TETGIER 599

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           ++++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++
Sbjct: 600 MTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELI 659

Query: 668 T 668
            
Sbjct: 660 Q 660


>gi|160881019|ref|YP_001559987.1| ATP-dependent DNA helicase RecG [Clostridium phytofermentans ISDg]
 gi|160429685|gb|ABX43248.1| ATP-dependent DNA helicase RecG [Clostridium phytofermentans ISDg]
          Length = 678

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 221/665 (33%), Positives = 357/665 (53%), Gaps = 15/665 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   L   +G+G+K  L   K+            DL+ ++P  +        IS   E  
Sbjct: 3   LTDSLGKIKGIGEKTELKFHKLS------LFSVNDLIEHYPRGYEVYEMPKPISSAVEGT 56

Query: 69  IVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            + I   I+  +  +  +  +    ++ D +G I L +F +    LKN    G +    G
Sbjct: 57  TIAIEAGIASIAEVKKIRNLQIITCMVRDPSGTIKLTWFNQ--PFLKNTLRMGARFIFRG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           K+ +    +++  P         +   +++ +Y+L  GL+     K +   LS++    E
Sbjct: 115 KVTRKNGSLVIGQPKIYKQEEYRILLNVMQPIYALTEGLTNHTVSKAVNTVLSQIDDFKE 174

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
           ++ K ++++++  S   A   IH P+           R RL +DE     + L  +R+  
Sbjct: 175 FLPKTIIKEQNLISRKAAIREIHFPKARDTMLEA---RRRLVFDEFFIYTVILQRIRENK 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
              +   +  E +   +++  +P+  T +Q+   +++ +D+     M R++QGDVGSGKT
Sbjct: 232 GSILNGFVIKEQQEVSELIAGLPYELTNAQKKVWEEVKKDLLCNTSMNRLIQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           ++A++A+    + G Q   M P  +LA+QH E ++       + +E++ G+M  + +RKA
Sbjct: 292 ILAVLALLLVAKNGYQGCFMVPTEVLAKQHLEALQSSLTRFGVKIELLVGSMTASMKRKA 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            +RI + +  II+GTHAL Q+ + Y KL LVI DEQHRFGV+QR  L  K   PHVL+M+
Sbjct: 352 YQRIENHEVDIIVGTHALIQEKVIYDKLALVITDEQHRFGVKQRESLLNKGDNPHVLVMS 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +   GD+DIS + E PA R PIK  ++     +     +   +SEG++AY 
Sbjct: 412 ATPIPRTLAIILYGDLDISVVDELPANRLPIKNCVVDSTYRETAYRFIGKQISEGRQAYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP +EE +     +VVE    L E   S   I  +HG+M   DK+ +M  F +G  K+L
Sbjct: 472 ICPMVEESETMEAENVVEYTEKLKEALPSINGIEYLHGKMKPKDKDDIMGRFASGEIKVL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V ++++++IENAE FGLAQLHQLRGRVGRG   S CIL+     SK + 
Sbjct: 532 VSTTVVEVGVNVPNSTVMMIENAERFGLAQLHQLRGRVGRGAHQSYCILVSGSS-SKETM 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL +L  + DGF IA EDLK R  G++ GI+QSG  +F I       S+L+ A + AK+
Sbjct: 591 ERLEILNKSNDGFFIASEDLKLRGPGDLFGIRQSGDLEFKIGDIYQDASVLKAANEAAKN 650

Query: 666 ILTQD 670
           +  ++
Sbjct: 651 LTAEE 655


>gi|160896460|ref|YP_001562042.1| ATP-dependent DNA helicase RecG [Delftia acidovorans SPH-1]
 gi|160362044|gb|ABX33657.1| ATP-dependent DNA helicase RecG [Delftia acidovorans SPH-1]
          Length = 746

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 237/675 (35%), Positives = 354/675 (52%), Gaps = 37/675 (5%)

Query: 33  CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI 92
                  R IDL  + P  + D      +    E   V I   ++ HS  QL+ RR  K+
Sbjct: 61  LQKMGLVRDIDLALHLPLRYEDETRITALRNAREGDTVQIEATVT-HSEVQLRPRRMLKV 119

Query: 93  LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN 152
            ++DGT E  L FF       K     G ++ + G++K       M+HP +         
Sbjct: 120 TVDDGTAECVLTFFSFYPSHQK-TLSVGARLRIRGEVKGGFWGRQMLHPAFRAAGGDLPT 178

Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE----KDLLQKKS------FPSI 202
              +  VY    GL     ++  V A+ R   L + +       + Q           S+
Sbjct: 179 --ALTPVYPTVAGLPQAYIRRAAVTAMLRAD-LSDTLPQGEHPPVAQFHGNGGLPPLFSL 235

Query: 203 AEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI----- 253
            +A   +H+P          + + PA +RL  +ELLA Q++    +++  +         
Sbjct: 236 RDALQFLHHPTPDVALATLEDHSHPAWQRLKAEELLAQQLSQYEAKRERARLRAPVLRAQ 295

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P++    +A++ L  +PF  T +Q+  + +IL DM ++  M R+LQGDVGSGKT+VA ++
Sbjct: 296 PMDSAQGLARQFLDQLPFGLTGAQQRVVAEILADMERRMPMHRLLQGDVGSGKTVVAALS 355

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHY----EFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
             A +EAG Q  +MAP  ILA+QH+     +++         V  + G   +  R   LE
Sbjct: 356 AVACIEAGWQCALMAPTEILAEQHFGKLVGWLEPLLAPLGKRVAWLAGAQKKKERTAMLE 415

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLL 425
            +  G+A +++GTHA+ QD +Q+  L L ++DEQHRFGV QRL L QK       PH+L+
Sbjct: 416 LVHSGEAALVVGTHAVIQDQVQFKNLALAVIDEQHRFGVAQRLALRQKLAASGMEPHLLM 475

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPRTL ++   D+D+S I E P GR PI T +I  +R DEVIER+   ++EG++ 
Sbjct: 476 MSATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVIERIGAQVAEGRQV 535

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKL 544
           YW+CP IEE +  +  +       L E      + ++H RM   +K++VM+ F  G   +
Sbjct: 536 YWVCPLIEESEALDLSNATATHAYLSEMLPGVMVGLLHSRMPTAEKKAVMELFSAGVMGV 595

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY----HPPL 600
           L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY       L
Sbjct: 596 LVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYSVGDSGRL 655

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            + +  RL  +  T DGF IA  DL+ R  GE LG +QSG P    A  E    LL+ AR
Sbjct: 656 GETAKDRLRAMAETNDGFEIARRDLEIRGPGEFLGARQSGAPMLRFADLEQDLMLLDWAR 715

Query: 661 KDAKHILTQDPDLTS 675
           + A  +L Q P L  
Sbjct: 716 ELAPRMLEQHPQLAQ 730


>gi|291279604|ref|YP_003496439.1| ATP-dependent DNA recombinase RecG [Deferribacter desulfuricans
           SSM1]
 gi|290754306|dbj|BAI80683.1| ATP-dependent DNA recombinase RecG [Deferribacter desulfuricans
           SSM1]
          Length = 762

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 244/696 (35%), Positives = 370/696 (53%), Gaps = 27/696 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+S   G+G+K    L K             DLLF  P  +                 + 
Sbjct: 87  PISFIDGIGEKTEQILEK------FGIKSIEDLLFNFPYRYEFYGNYKD--------NIL 132

Query: 72  ITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G ++  +  Q +  ++            I  +++         +  E +   + GK  
Sbjct: 133 IKGVLASKNIIQTKYGKKILLAQFKHNDNIILGVWYSFTKNYPLPLLIENKAYYLFGKKS 192

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA-LSRLPVLPEWI 189
           K  N   + HP ++    +D     I  +YSLP+ ++   + KI+ +A  +      E +
Sbjct: 193 KFNNLPAITHPIFL----KDYEVNKIIPIYSLPSKIANKTYYKIVQKAYFNFRDSFIETL 248

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRK 245
              LL K  +P I +A   IH P   +  E       PA +R  Y+EL   QI LL  ++
Sbjct: 249 PHYLLMKYGYPEIKQALKQIHFPEDIQAAENLTEKKHPAFQRFVYEELFYLQIGLLANKQ 308

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             K  +GI   V+    +++   +PF  T SQ+  + +I  DM + N+M R++QGDVGSG
Sbjct: 309 ILKSTLGIKFEVDLDKLKELKDFLPFELTSSQKRVLAEIFNDMKKINQMNRLIQGDVGSG 368

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA IA   AV    Q  I+AP  +LA+QHY        +      +ITG+ P+  + 
Sbjct: 369 KTIVAFIAGIVAVFNKYQVAIIAPTEVLAEQHYNNFVNLFGDKYTK-ALITGSTPKKEKE 427

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
              E+I+ G+   I GTHAL Q+ + +  L L I+DEQHRFGV+QR  L  K   P +LL
Sbjct: 428 ILKEKISKGEIDFIFGTHALIQEDVNFNALGLAIIDEQHRFGVEQRKLLIDKGYNPDILL 487

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPRTL LT  GD+DIS I E P GRK + T      RI EV + +K  LS+G KA
Sbjct: 488 MSATPIPRTLALTFYGDLDISIIDEMPPGRKTVITKAYSETRIYEVFDFVKQELSKGNKA 547

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDSFKNGTCKL 544
           Y+I P IEE ++ + ++  E +  + ++F   +  ++HG+M   +K+ V+  FK G   +
Sbjct: 548 YFIYPLIEESEKLDLKAATESYEKIKKYFGEEVVTLLHGKMKSEEKKQVLHDFKYGKKSI 607

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVGIDV +A++I+IENAE FGL+QLHQLRGRVGR ++ S CIL+Y   +S++ 
Sbjct: 608 LVSTTVIEVGIDVTEATVIVIENAERFGLSQLHQLRGRVGRNDKQSYCILVYSKKISEDG 667

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R++ +     GF I+E DL+ R  G+  G KQSG+P    +      ++L+ ARKDA+
Sbjct: 668 KKRINAMVKYNSGFKISEIDLELRGPGDFFGTKQSGLPDLKFSNIIRDVAILKKARKDAE 727

Query: 665 HILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            IL +DP+LTS + + +R  L   ++ + F +I  G
Sbjct: 728 TILKEDPNLTSPKNRIVRETL-TQKWKKEFDYINIG 762


>gi|193222220|emb|CAL60528.2| ATP-dependent DNA helicase recG [Herminiimonas arsenicoxydans]
          Length = 711

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 246/672 (36%), Positives = 369/672 (54%), Gaps = 22/672 (3%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYISQHSSFQLQKRRPYKIL 93
                 +D + + P  + D      ISE      R V + G ++       + RR   + 
Sbjct: 42  LGLRSDMDKVLHLPLRYEDETEIRSISEAGFIFGRSVQVEGVVTAC-EVAFRPRRQLVVT 100

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           ++D +G++ + F       +K +  EG ++   G+++       MVHP Y          
Sbjct: 101 ISDDSGQLVMRFLNFYGSQVKQM-AEGNRVRARGEVRHGFFGAEMVHPSYKMVTEGAPLP 159

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
             +  VY    GLS  L +K I++A++R+    + + + L       S   A  ++HNP 
Sbjct: 160 SALTPVYPAGEGLSQTLLRKTIIDAMARIE-WRDTLSEQLRSSLDLMSFEPAVRLLHNPP 218

Query: 214 KAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
              D     + +  A  R+ +DELLA Q+++   +   +++    +   GK+++  L+ +
Sbjct: 219 PDIDESVLADRSHAAWVRMKFDELLAQQLSMKRAQIARREKGAAVLPTIGKLSKAFLKQL 278

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PFS T +Q+  ++++  D+ Q   M R+LQGDVGSGKT+VA IA A A+++G QAV+MAP
Sbjct: 279 PFSLTAAQQRVLEEVRADLKQSFPMQRLLQGDVGSGKTVVAAIAAAQAIDSGFQAVLMAP 338

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA QH+  I  + +   + V  +TG++ +  + +A  RI  G A +IIGTHAL Q+ 
Sbjct: 339 TEILADQHFRKIAGWMEPLGVNVAWLTGSLKKKEKLEAKARIESGVAQLIIGTHALIQED 398

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLT----------QKATAPHVLLMTATPIPRTLVLTS 439
           +Q+ KL LVIVDEQHRFGV QRL L            +   PH L+M+ATPIPRTL +T 
Sbjct: 399 VQFSKLGLVIVDEQHRFGVGQRLVLRNKGLDASAAAAQQKIPHQLMMSATPIPRTLAMTY 458

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+++S I E P GR PI T +I  NR DEVIER+     EG++ YW+CP IEE +   
Sbjct: 459 YADLEVSVIDELPPGRTPIVTRVIDQNRRDEVIERVHAAALEGRQVYWVCPLIEESEALQ 518

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++  +   +L        + ++HGRM   DK+ VMD+F  G   +L+ATTVIEVG+DV 
Sbjct: 519 LQTATDTHQTLVAALPDLQVGLVHGRMKPADKQQVMDAFTRGDIHVLVATTVIEVGVDVP 578

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +AS+++IE+AE FGL+QLHQLRGRVGRG   S C+LLY  PL   +  RL +++ + DGF
Sbjct: 579 NASLMVIEHAERFGLSQLHQLRGRVGRGSTASVCLLLYQGPLGMVAKQRLRIMRESTDGF 638

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA +DL+ R  GE LG +QSG      A  E    L++ AR  A+ +L  DP   +V  
Sbjct: 639 EIARKDLEIRGPGEFLGARQSGQAMLRFADLETDQWLVDRARDLAQTLLRDDP--ATVGA 696

Query: 679 QSIRILLYLYQY 690
              R L     Y
Sbjct: 697 HLARWLGAREDY 708


>gi|163856603|ref|YP_001630901.1| ATP-dependent DNA helicase RecG [Bordetella petrii DSM 12804]
 gi|163260331|emb|CAP42633.1| ATP-dependent DNA helicase [Bordetella petrii]
          Length = 696

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 232/667 (34%), Positives = 352/667 (52%), Gaps = 21/667 (3%)

Query: 32  NCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYK 91
              +       D + + P  + D      I  +       + G I + S    + RR   
Sbjct: 28  KLHSLGLVTAEDCILHLPLRYEDETRIVPIGSLRPGATAQVEGEILR-SEVLYRPRRQLT 86

Query: 92  ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV 151
            ++ D +GE+ L +        K     GR++   G+++       +VHP     +++  
Sbjct: 87  AVMADDSGELQLRWLNFYPSQQKQ-LAIGRRLRARGEVRGGLFGREIVHP--RMSSAETP 143

Query: 152 NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
               +  VY    GL     +K I +AL +   L + +    L++      A A  ++H 
Sbjct: 144 LPDALTPVYPSTDGLPQPSLRKAIGQALQQ-ANLDDTLPPAALERYDLMPFAPAIRLLHA 202

Query: 212 PRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI---AQK 264
           P          E   PA  R+ +DELLA Q++L   R   +     P+  +G       +
Sbjct: 203 PPPGVSEHDLIERGHPAWRRIKFDELLAQQLSLAAARAARRSIRAEPLPAQGGAGGLVAR 262

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +   +PF  T +Q+  +++I  D+++   M R+LQGDVGSGKT+VA IA A A+  G Q 
Sbjct: 263 LYAALPFQLTGAQQRVVQEIAADLAKPYPMHRLLQGDVGSGKTVVAAIAAAQAIACGAQV 322

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  ILA+QH+  +  + Q   + V  ++G++    RR+A    A G   +++GT A
Sbjct: 323 ALMAPTEILAEQHFRKLVSWLQPLGVNVAWLSGSLTAKARRQAAASAADGSVQLVVGTQA 382

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLT------QKATAPHVLLMTATPIPRTLVLT 438
           L QD +++++L L IVDEQHRFGV QRL LT      Q  T PH L M+ATPIPRTL +T
Sbjct: 383 LIQDHVEFHRLGLSIVDEQHRFGVGQRLALTRKGEAPQGHTVPHQLNMSATPIPRTLAMT 442

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
              D+D+S I E P GR P+ T ++   R DEVI  +   + EG++AYW+CP +EE +  
Sbjct: 443 FFADLDVSVIDELPPGRTPVVTKLVSDGRRDEVIAHIAHAVREGRQAYWVCPLVEESEAL 502

Query: 499 NFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             ++ V+ + ++        + ++HGR+   DK +VM +F++G   LL+ATTVIEVG+DV
Sbjct: 503 QLQTAVDTYETMQAELPDLRLGLVHGRLPQTDKAAVMQAFRDGDIDLLVATTVIEVGVDV 562

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS+ +  RL  +  T DG
Sbjct: 563 PNASLMVIEHAERFGLAQLHQLRGRVGRGSAESVCVLLYQTPLSQVARQRLRAMFETSDG 622

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           F IA  DL+QR  GE LG +QSG+     A  E    + E AR+ A  +  + P   +V 
Sbjct: 623 FEIARRDLEQRGPGEFLGTRQSGVTLLRFADLESDVGIAEQAREAAAWLRNEYP--AAVE 680

Query: 678 GQSIRIL 684
               R +
Sbjct: 681 AHLARWM 687


>gi|116617652|ref|YP_818023.1| ATP-dependent DNA helicase RecG [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096499|gb|ABJ61650.1| ATP-dependent DNA helicase RecG [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 676

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 234/678 (34%), Positives = 356/678 (52%), Gaps = 25/678 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   ++   GVG K    L +I            DL+ Y P  + D   R   SE  +  
Sbjct: 4   LNDNVNILPGVGPKRLDALHEI------GIFTIEDLINYFPFRYEDLGERLP-SETLDGE 56

Query: 69  IVTITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             T  G +S  +   +  KR   +  L      + + FF +    +      G+++ V G
Sbjct: 57  KATFKGIVSTPAVVTRFGKRSQTRFGLMIEHENVRVSFFNQ--PWIAQNVEVGQEVAVYG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLP 186
                K  +  +       N  D        +Y     +S    + +I  A + +   + 
Sbjct: 115 TYDAAKASLTGMKVISKASNEFD-------PIYPSSKQISAKTIRHLIEIAWADVRGTVG 167

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
             +   + QK            +H P    D E    AR  +A++E    Q+ L L++  
Sbjct: 168 SLVPDKIRQKYRLLDRNTQIENMHFP---ADMEQAKLARRSIAFEEFFIFQMRLQLLKLA 224

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            K   G  IN + K   K    +PF+ T +Q+  + +IL D  +   M R+LQGDVGSGK
Sbjct: 225 DKNFSGEGINYDSKALNKFEAGLPFTLTGAQQKVVSEILTDQKRPVHMNRLLQGDVGSGK 284

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHR 364
           T+VA IA+ A V AG QA +MAP  ILAQQH   +    + + +   +E++T  M  A R
Sbjct: 285 TVVAAIALYAVVTAGMQAALMAPTEILAQQHAINLALMFEKSGVDIRIELLTSGMKAAAR 344

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R+ LE +A G   I++GTHAL Q  + ++ L L ++DEQHRFGV QR KL +    P +L
Sbjct: 345 RQLLEDLADGTIDILVGTHALLQPDVMFHHLGLAVIDEQHRFGVNQRAKLRENGVNPDIL 404

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            MTATPIPRTL +T+ G++D+S I + P GRK I+T  I  N++D  I  LK  LSEG +
Sbjct: 405 AMTATPIPRTLSITTYGEMDVSIIDQLPNGRKQIQTRKISHNQLDSAINFLKQQLSEGAQ 464

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLH-EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           AY + P IEE +  + ++    + +L  E    +I ++HGR+S+ +K+++M  FK    +
Sbjct: 465 AYVVTPLIEESEALDVQNAQAMYEALQLELPNDTIGLLHGRLSNDEKKALMADFKRNKIQ 524

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ATTVIEVG+DV +ASI++I +A+ FGLAQLHQLRGRVGRG   S  IL+  P  +  
Sbjct: 525 VLVATTVIEVGVDVPNASIMLIMDADRFGLAQLHQLRGRVGRGTRQSYTILVADPK-TDY 583

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              RL  +  T DGF++A++DL+ R  G+ILG KQSG+P+F +  P     ++E+A+++A
Sbjct: 584 GRARLDAMVETTDGFILAQKDLELRGSGDILGTKQSGVPEFAVGDPIKDLKMMEVAQQEA 643

Query: 664 KHILTQDPDLTSVRGQSI 681
             +++ D    S   Q +
Sbjct: 644 ISMVSTDDWDKSSENQEL 661


>gi|126696154|ref|YP_001091040.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
           9301]
 gi|126543197|gb|ABO17439.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT
           9301]
          Length = 818

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 239/694 (34%), Positives = 379/694 (54%), Gaps = 29/694 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
             + +S  + VGK Y   L+++            DL+ Y P +++D   R KI  +  + 
Sbjct: 123 FDSDISLIKNVGKVYKNKLNEL------GIFHIKDLINYFPRTYLDYTNRVKIINLKPDN 176

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVF 117
           + T    + +    + +K     I+   + D T  I +  F+              K+++
Sbjct: 177 LYTCIANVKRFYIHKSKKNSNLSIMNIVVYDETSSIKVTKFFLGRRFRSYSFFTSQKSLY 236

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF---PLIEAVYSLPTGLSVDLFKKI 174
             G K+ ++GK+K  +     V P        + N+     I  +YSL   LS   F K+
Sbjct: 237 TAGTKLAISGKVKLTEYGKTFVDPQIEILKDNNDNYNFSGKILPLYSLGEALSNMSFIKL 296

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           + + L      PE + K  L   S  S  E+   IH P   +    +   ++RL +DEL 
Sbjct: 297 MKKVLIYAKQYPEILNKKQLDSLSLLSKGESLINIHFPPTQQALIES---KKRLVFDELF 353

Query: 235 AGQIALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             QI  LL +++  K      +  +  + ++ L N PF  TKSQE+ + +I +D+S    
Sbjct: 354 LLQIKFLLRKRKTNKNVTSQQLPQKKSLLKEFLNNFPFELTKSQENVLNEIKKDLSNPVP 413

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT++A+ ++   +E   Q   M P  +LA+QHY+ + KY     + VE
Sbjct: 414 MSRLLQGDVGSGKTIIAIASLLLVIEKNLQGAFMVPTEVLAEQHYKNLLKYLNPLLVSVE 473

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TGN PQ  R++    + +G   I++GTHALF+D + +  L +V++DEQHRFGV QR +
Sbjct: 474 LLTGNTPQKKRKEIFSNLNNGLVDILVGTHALFEDKVIFNALGMVVIDEQHRFGVTQRNR 533

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K    ++L MTATPIPRTL L+  GD+D+S+ITE P GR PI T II  + +  + +
Sbjct: 534 LLNKGDNTNLLSMTATPIPRTLALSIYGDLDVSQITELPPGRVPITTKIISEDNLTNLFK 593

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH--FTSSIAIIHGRMSDIDKE 531
            ++  +++GK+AY I P IE+ ++ N  S  + F  L E   F   + ++HG++S  +K 
Sbjct: 594 IVEDEINKGKQAYVILPLIEDSEKMNLSSAKKTFKYLSEEVFFNKKVGLLHGKLSSQEKN 653

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            V++SF      +L++TTVIEVGIDV +A+I+II N++ FGL+QLHQLRGRVGRG   S 
Sbjct: 654 EVINSFLKNEINILVSTTVIEVGIDVPNATIMIIYNSDRFGLSQLHQLRGRVGRGSTKSF 713

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C L+        +     VL+ + DGF IAE+DL+ R  G+ILG +QSG+P F++     
Sbjct: 714 CYLVTSDKNGLENKRLC-VLQKSNDGFYIAEKDLELRGPGQILGYRQSGLPDFVLDNLPN 772

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +  L++ AR++A  I++ DPDL   +   +R +L
Sbjct: 773 NKFLIDKAREEAIKIVSGDPDL--KKNIVLRNIL 804


>gi|302036761|ref|YP_003797083.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii]
 gi|190343176|gb|ACE75564.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii]
 gi|300604825|emb|CBK41157.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii]
          Length = 846

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 230/718 (32%), Positives = 378/718 (52%), Gaps = 41/718 (5%)

Query: 2   RPSFLNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           R S   PL+   +   +GVG K +L L ++              L+  P  + DR     
Sbjct: 124 RSSPARPLWELSIQYAKGVGPKRTLLLERL------GAHTVEQALWTLPWRYEDRSVITP 177

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
           ++E+      ++ G I++  + + + RR     + + D TG +  +FF +    L++V  
Sbjct: 178 VAELVPGATRSVCGVITRTEATRARVRRLSILDVAVQDATGTVHAVFFNQ--PYLEDVLK 235

Query: 119 EGRKITVTGKIKKLKNRIIMVHPH---YIFH---NSQDVNFPLIEAVYSLPTGLSVDLFK 172
           EG ++ ++G++   +     V      +        + ++   I ++Y    G +    +
Sbjct: 236 EGLRVMMSGRVAAGRGGWTEVRLEATQFEVLGGGEDELLHVGRIVSIYHETKGWTSRQMR 295

Query: 173 KIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARER 227
            ++   L+     + E +   +  +   P I EA   +H P    D     +  + A  R
Sbjct: 296 ILMQGLLAEYGADMEEVLPLSVRARHRLPPIGEAIQQVHFPLPKTDLTALDQGVTSAHRR 355

Query: 228 LAYDELLAGQIALLLMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286
           L ++ELL  Q A++L +++ K+E      N      +++ + +PF+ T +QE    +I  
Sbjct: 356 LVFEELLLLQAAIVLRQREMKEEPKAFRFNPHVSQLKQLAKVLPFALTSAQERVFHEIQA 415

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           DM     M R++QGDVGSGKT+VAL A+  A  +G Q  +M P  ILA+QHY  +    +
Sbjct: 416 DMVSSRPMNRLVQGDVGSGKTVVALHALVMACGSGCQTALMVPTEILAEQHYLNLAPLLE 475

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              +   ++T       R + L+++  G A + IGTHAL Q  +++ +L LVIVDEQH+F
Sbjct: 476 AVGLKAVLLTSGGKAKDRNETLKQLESGAAQVAIGTHALIQKKVRFARLGLVIVDEQHKF 535

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV QR  L +K   P VL+MTATPIPRTL +T  GD+D+S I   P GRKP++T++    
Sbjct: 536 GVLQRKTLLEKGYRPDVLVMTATPIPRTLAMTVYGDLDVSVIDMLPPGRKPVRTLLYTDG 595

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGR 524
           +  +  + +   L  G++ Y + P +EE ++ + ++ ++    L       + + ++HGR
Sbjct: 596 QRHKTWQLVGDELKAGRQVYIVYPLVEESEKVDLKAAIQGAEHLQREIFPQARVGLLHGR 655

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +   +KE  M +FK GT ++L+ATTVIEVG+DV +A++++IE+AE FGLAQLHQLRGRVG
Sbjct: 656 LPTAEKERTMAAFKAGTIQVLVATTVIEVGVDVPNATVMVIEHAERFGLAQLHQLRGRVG 715

Query: 585 RGEEISSCILLYH----------------PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           RG + S CIL+                        +  RL+ L N+ DGF+IAEEDL+ R
Sbjct: 716 RGAQQSLCILMATYLAREARARVSRDGRPEENVSGAQQRLAALVNSNDGFVIAEEDLRIR 775

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             GE LG++Q G+P+F  A       LLE AR++A  +L QDP LT  + Q+ +  ++
Sbjct: 776 GPGEFLGLRQWGVPEFRAANLVRDAQLLEQARQEAVALLEQDPGLTLPQHQAFKAAMF 833


>gi|309389035|gb|ADO76915.1| ATP-dependent DNA helicase RecG [Halanaerobium praevalens DSM 2228]
          Length = 685

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 240/671 (35%), Positives = 376/671 (56%), Gaps = 23/671 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG K++  LS++      +     DLL+Y P  + DR    +I       
Sbjct: 5   LADEVQFVKGVGPKWAERLSQL------DIKTVRDLLYYFPREYEDRSQLSQIKYTKIGE 58

Query: 69  IVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
                  + + +  +++      K+  +DG+  +  +++ +    L+N F EG +  +TG
Sbjct: 59  KANFKVEVLKINYQKIRPNLDLLKVSFSDGSDVVNGIWYNQ--AYLRNQFKEGDQYLITG 116

Query: 128 KIK----KLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           KI     +   R  + +P Y    S+   +N   I  +Y L  GLS    +K+I   +  
Sbjct: 117 KISEKNWRKYKRKEINNPVYEKIGSEASVLNTGRIVPIYPLTEGLSQRRLRKVIANVIKN 176

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
              +L + + ++LL+K  FP +  A   +H P+  K     + +R+RLA++E    Q+  
Sbjct: 177 YGSLLKDQLPRNLLEKYQFPDLKTAILGMHFPKNQK---HKNLSRQRLAFEEFFHLQLYA 233

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L  +K+  K  GI    +  +  K+L  + F  T +Q+  + +I  DM  +  M R+LQG
Sbjct: 234 LEEKKKKTKFKGIKHEFKQSVNDKLLSQLNFELTAAQKRVLNEIEADMGSEKTMARLLQG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A+   +  G Q + MAP  ILA+QH+   ++  ++    VEI+TG++ 
Sbjct: 294 DVGSGKTIVAALALLQTLANGCQGIFMAPTEILAEQHFLNFQELLKDFDYKVEILTGSVK 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           QA R++    I  G+  +IIGTHALFQ ++ Y    LV++DEQHRFGV+QR  L +K  +
Sbjct: 354 QAARKEIEAEIKTGEIDLIIGTHALFQKALTYQNPGLVVIDEQHRFGVEQRHSLKEKGDS 413

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P +L+MTATPIPR++ +   GD+D+S I + P GRK I T     NR  ++   L+  ++
Sbjct: 414 PDLLIMTATPIPRSMAMLIYGDLDLSVIDQMPPGRKKIATFWRRENRRKKIYSFLEEKIN 473

Query: 481 EGKKAYWICPQIEEKKES-NFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSF 537
           +G++AY +CP IEE +E     +  E +N+L   F     +A+IH  +  ++K+ +M+ F
Sbjct: 474 KGRQAYIVCPLIEESEEMPELLAAEELYNNLKTGFFKNNKLALIHSSVPALEKKEIMEKF 533

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + G   +LIATTVIEVG+DV +ASI+IIENAE FGLAQLHQLRGRVGRG   S CIL+ +
Sbjct: 534 RAGKIDILIATTVIEVGVDVSNASIMIIENAERFGLAQLHQLRGRVGRGSYQSYCILISN 593

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           P   +++  RL ++  + +GFLIAEEDLK R  GE  G KQ G+    +A       LL 
Sbjct: 594 PR-GEDATRRLEIMCKSNNGFLIAEEDLKMRGPGEFFGTKQHGIDDLKVASLTADQELLA 652

Query: 658 IARKDAKHILT 668
            AR +A+ I+ 
Sbjct: 653 KARTEAQAIVE 663


>gi|160939091|ref|ZP_02086442.1| hypothetical protein CLOBOL_03985 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438054|gb|EDP15814.1| hypothetical protein CLOBOL_03985 [Clostridium bolteae ATCC
           BAA-613]
          Length = 685

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 215/683 (31%), Positives = 362/683 (53%), Gaps = 17/683 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            P+++ +G+G+K      K+            DLL Y+P ++        I ++ E+ ++
Sbjct: 5   QPVNSLKGIGEKTGKLFEKL------GVVTIDDLLSYYPRAYDAYEPPVSIGQLKEQAVM 58

Query: 71  TIT-GYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            +    +      +L   +   + L D TG + + ++      ++     G      G++
Sbjct: 59  AVESALVRGADLLRLGHMQIVSVQLKDLTGSLQVSWYN--MPYMRANLKTGVTYVFRGRV 116

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            K + R++M  P     +S       ++ VY    GLS     +    AL    +  E++
Sbjct: 117 VKKRGRMVMEQPEVFTPDSYQALAGSMQPVYGQTRGLSNKTIVRAQQMALEMRKMEREYM 176

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             DL ++     I  A   IH P    +  +    R+RL +DE     + +  +++  + 
Sbjct: 177 PPDLRRRYELAEINYAMEHIHFPADQTELLFA---RKRLVFDEFFMFLVGVRRLKEHRED 233

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                +  E +       ++P++ T +QE A++++  DM     M R++QGDVGSGKT++
Sbjct: 234 RHSAFMIKESEEVAAFQSSLPYALTGAQERALREVYGDMGSGLVMNRLIQGDVGSGKTII 293

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRKA 367
           A++A+  A   G Q  +M P  +LA+QH+E +    +   I  +  ++TG+M    +R A
Sbjct: 294 AILALLEAAYNGYQGALMVPTEVLARQHFESMTGLFEKQGIEKVPVLVTGSMTAKEKRLA 353

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             +IA  +A IIIGTHAL Q+ + Y  L LVI DEQHRFGV QR  L+ K   PHVL+M+
Sbjct: 354 YAKIASHEADIIIGTHALIQEKVVYDNLALVITDEQHRFGVGQRELLSSKGQEPHVLVMS 413

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +   GD+DIS I E PAGR+ IK  ++      +    ++  ++EG +AY 
Sbjct: 414 ATPIPRTLAIILYGDLDISVIDELPAGRQTIKNCVVDPGYRPKAYAFIERQVAEGHQAYV 473

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP +EE +     +V++   +L +    S+ +  +HG++   +K ++M+ F  G   +L
Sbjct: 474 ICPMVEESEMIEAENVLDYTKALRKALPPSVTVEYLHGKLKGKEKNAIMERFAAGEIHVL 533

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG++ S CI + +    + + 
Sbjct: 534 VSTTVIEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGKDQSYCI-MVNCSRDQGAG 592

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL +L  + DGF IA EDLK R  G+I G++QSG  +F +A      ++L+   ++   
Sbjct: 593 ERLDILNRSNDGFYIASEDLKLRGPGDIFGLRQSGDMEFKLADIFTDANILKKVSEEVNR 652

Query: 666 ILTQDPDLTSVRGQSIRILLYLY 688
           +L +DP L     + ++  +  Y
Sbjct: 653 LLDEDPQLEKDEHRELKRKVEDY 675


>gi|260435719|ref|ZP_05789689.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 8109]
 gi|260413593|gb|EEX06889.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 8109]
          Length = 838

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 234/704 (33%), Positives = 380/704 (53%), Gaps = 33/704 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  RGVG K++  L+ I            DLL Y+P   +D     +I  +    
Sbjct: 139 LDSPITQIRGVGPKFAARLASI------GLLLVRDLLRYYPRDHVDYSAMRRIEALVSGE 192

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVF 117
             TI   I + + F   +     I+   L D TG + +  F               + ++
Sbjct: 193 TATIVATIRRCNGFVSPRNTNLAIIELQLQDPTGRLKVSRFLAGKRFSSPAYFKGQQRLY 252

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-----FPLIEAVYSLPTGLSVDLFK 172
             G  + V+G +K     I    P     +S            I  VY L  G+  D F+
Sbjct: 253 PVGATVAVSGLVKDGPYGITFQDPLIEVLDSPSSPVKSPSIGRIFPVYPLTEGVGADRFR 312

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            +I + L      P+ +   + ++   P+++EA   +H P   KD E     R RL +DE
Sbjct: 313 SLIDQVLPLAASWPDPLPAAIQRQFLLPALSEALQALHAP---KDRESLDRGRRRLVFDE 369

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKI---AQKILRNIPFSPTKSQESAIKDILQDMS 289
            L  Q+ LL  R+  +   G  ++++        + +  +PF  T +Q+   ++I  D++
Sbjct: 370 FLLLQLGLLRRRQALRSRTGPDLDLQSSSNGLVGEFMDLLPFRFTAAQQRVFQEIEADLA 429

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           +   M R++QGDVGSGKT+VA+ A+ + + +G Q  +MAP  +LA+QHY  + ++     
Sbjct: 430 RNEPMARLVQGDVGSGKTVVAIAALLSTIASGWQGALMAPTEVLAEQHYRNLCQWLPQLH 489

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + V ++TG+ P+  RR+ ++ +A+G   +++GTHAL +D + + +L LV+VDEQHRFGV 
Sbjct: 490 VSVALLTGSTPRPRRRELMDDLANGSLKVLVGTHALLEDPVVFNRLGLVVVDEQHRFGVH 549

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI+T ++   + +
Sbjct: 550 QRDRLLNKGLQPHLLTMTATPIPRTLALSMHGDLDVSQIDELPPGRTPIRTRMLTAAKRE 609

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSD 527
           +  E ++  +  G++AY + P ++E ++   RS VE    L        ++ ++HGR+S 
Sbjct: 610 KAYELIREEVQLGQRAYVVLPLVDESEKLELRSAVEVHAELASEVFPDLAVGLLHGRLSS 669

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K++V+  F  G  ++L++TTV+EVG+DV +AS+++I++AE FGLAQLHQLRGRVGRG 
Sbjct: 670 AEKQAVLTDFAAGKSQVLVSTTVVEVGVDVPEASVMVIDHAERFGLAQLHQLRGRVGRGA 729

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C LL +   +  +  RL VL  + DGF IAE DL+ R  G++LG +QSG+P   +A
Sbjct: 730 AASHC-LLINGSSNPLARQRLDVLVRSTDGFEIAEMDLRLRGPGQVLGSRQSGLPDLALA 788

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
                 ++LE AR  A+ +L  DP+L   +   +R  L   Q  
Sbjct: 789 SLADDGAVLEDARTAAQELLNNDPELE--QNPLLRETLDAQQRR 830


>gi|293605612|ref|ZP_06687992.1| DNA helicase RecG [Achromobacter piechaudii ATCC 43553]
 gi|292815992|gb|EFF75093.1| DNA helicase RecG [Achromobacter piechaudii ATCC 43553]
          Length = 696

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 239/669 (35%), Positives = 351/669 (52%), Gaps = 21/669 (3%)

Query: 30  IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP 89
                N       D + + P  + D      IS +       + G I++ S  Q + RR 
Sbjct: 26  ERKLRNLGLVLPEDFVLHLPLRYEDETRVVPISALRPGYAGQVEGEITK-SEVQYRPRRQ 84

Query: 90  YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ 149
               L D TGEI L +        K     G+++   G+++       MVHP     N+ 
Sbjct: 85  LTATLADETGEIQLRWLNFYPSQQKQ-ISVGKRLRARGEVRSNLFGRQMVHP--RMTNAD 141

Query: 150 DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209
                 +  VY    GL     ++ I +AL R   L + +  + L +   P    A   +
Sbjct: 142 APLPTALTPVYPTTEGLPQLTLRRAIAQALDRAD-LSDTLPPEALARYDLPPFEPAIRAL 200

Query: 210 HNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI---A 262
           H P + +      +   PA  R+ +DELLA Q++L   R   + +    + V  +     
Sbjct: 201 HTPAQGESEQALLDRVHPAWRRIKFDELLAQQLSLAAARAARRIKEAESLPVRNEPGGLV 260

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            K+  N+PF  T +QE  +++I  D+++   M R+LQGDVGSGKT+VA IA A A+  G 
Sbjct: 261 AKLYANLPFKLTAAQERVVQEISADLAKPYPMHRLLQGDVGSGKTVVAAIAAAQAIAGGA 320

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  +MAP  ILA+QH+  +  + Q   I V  ++G++    RR+A    A G   +++GT
Sbjct: 321 QVALMAPTEILAEQHFRKLVSWLQPLGINVAWLSGSLTAKARREAAAAAADGSVQLVVGT 380

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMTATPIPRTLV 436
            AL QD +++++L L IVDEQHRFGV QRL LT+K         PH L M+ATPIPRTL 
Sbjct: 381 QALIQDHVEFHRLGLSIVDEQHRFGVGQRLALTKKGETVRGRIVPHQLNMSATPIPRTLA 440

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +T   D+D+S I E P GR P+ T ++   R +EVI  +      G++ YW+CP +EE +
Sbjct: 441 MTFFADLDVSVIDELPPGRTPVLTKLVSDARREEVIAHVAQAARGGQQVYWVCPLVEESE 500

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
               ++ V+ +  +        I ++HGR+   +K +VM +F+ G   LL+ATTVIEVG+
Sbjct: 501 ALELQTAVDTYEGMRTDLPDLRIGLVHGRLPQAEKAAVMQAFREGEVDLLVATTVIEVGV 560

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS+ +  RL  +  T 
Sbjct: 561 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCVLLYQTPLSQVARERLRAMFETS 620

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           DGF IA  DL+QR  GE LG +QSGM     A  E   ++ E AR  A  +  + PD  +
Sbjct: 621 DGFEIARRDLEQRGPGEFLGTRQSGMALLRFADLETDAAIAEDARDAAVWLRAEYPD--A 678

Query: 676 VRGQSIRIL 684
           V     R +
Sbjct: 679 VEAHLARWM 687


>gi|332799410|ref|YP_004460909.1| ATP-dependent DNA helicase RecG [Tepidanaerobacter sp. Re1]
 gi|332697145|gb|AEE91602.1| ATP-dependent DNA helicase RecG [Tepidanaerobacter sp. Re1]
          Length = 675

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 215/662 (32%), Positives = 355/662 (53%), Gaps = 17/662 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           + +   +G+G   +  LSK+            D+LFY P  + D        + +E+   
Sbjct: 7   SDVKNIKGIGPARAKQLSKL------GIYTIRDVLFYFPRDYQDMSPLT-FKQGTEDETG 59

Query: 71  TITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
                ++  +  +  +   Y  K+ + DG  +   +FF +    ++  F+  +++ + GK
Sbjct: 60  VFPCIVTGSAVSRKTRTGIYITKLPITDGQNKGYAVFFNQ--PFVEKSFYPNQRLLLIGK 117

Query: 129 IKKLKNRIIMVHPHYI-FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           IKK      +  P +I F    ++    I  +Y L  G+S +  +  +  A+ +   L E
Sbjct: 118 IKKNFGVYEISSPEWIKFEKVSNIKIERIRPIYPLSKGISQNFIRNTVKNAIEKFSGLEE 177

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +  D+L + +  S+ EA   IH P+  +  E    ARER  ++ELL  Q+ + L R   
Sbjct: 178 TLPNDILSRYNLLSLEEAIKNIHFPQNFRMLE---KARERFIFEELLLFQLGVNLSRYYS 234

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K E            +  L  IPF+ T  QE  +KDI++D+  +  M R++QGDVGSGKT
Sbjct: 235 KSEK-RKNVYNTIDLEPFLSGIPFTLTSGQEKVLKDIIKDLKSEYIMSRLIQGDVGSGKT 293

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           ++A  A+  +V+ G Q V+MAP  ILA+QHY  +K++     I V+++ G + +  R+K 
Sbjct: 294 VIACAALYLSVKNGFQGVMMAPTEILAEQHYNTLKRFLSPFDINVDMLKGGLAEKERKKL 353

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++ +G   +++GTHA+ Q+ +++ KL +VI DEQHRFGV+QR  L +K   P V++M+
Sbjct: 354 LLKLKNGTVDVLVGTHAIIQEDVEFKKLGMVITDEQHRFGVKQRENLVKKGHCPDVIVMS 413

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRT+ +    D+DIS I   PAGR+ + T ++  +    + + +   + +G   Y 
Sbjct: 414 ATPIPRTIAMALYSDLDISVIDTLPAGRQKVDTYVVNDSMRKRIYDFMASEVKKGHLVYV 473

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +CP +EE +               E+    I ++HG+M   +K+ +++ F     ++L+A
Sbjct: 474 VCPAVEENELEIINVEQHTAYLRQEYPYLQIGMLHGKMKQDEKDKMLNRFLLKKIQVLVA 533

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTV+EVG+DV  A+++I+ENAE FGLAQLHQLRGRVGR    S CIL+        +  R
Sbjct: 534 TTVVEVGVDVPLATLMIVENAERFGLAQLHQLRGRVGRSSLKSYCILISGSNQG-TARER 592

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L+ L N  DGF I+++DL+ R  GE LG+KQ G  +F  A    +  +L+  +K A  IL
Sbjct: 593 LNYLMNCYDGFKISQKDLELRGPGEFLGVKQHGFFEFKFASFIDNIEILKTTQKLANQIL 652

Query: 668 TQ 669
            +
Sbjct: 653 EK 654


>gi|163814174|ref|ZP_02205566.1| hypothetical protein COPEUT_00328 [Coprococcus eutactus ATCC 27759]
 gi|158450623|gb|EDP27618.1| hypothetical protein COPEUT_00328 [Coprococcus eutactus ATCC 27759]
          Length = 678

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 225/661 (34%), Positives = 356/661 (53%), Gaps = 20/661 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   + T +G+G K +  +SK+            DLL Y+P ++I       I  +    
Sbjct: 3   LGDSIKTIKGIGDKTAAAMSKL------GIYTVSDLLMYYPRTYISYEDPVDIENLQTGM 56

Query: 69  IVTITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             ++   I S+    +++      +   D +G I L++F      L+N F  G++   +G
Sbjct: 57  RQSVRVMINSRVEVRKVRGLTISIVYAKDFSGTIKLMWFN--CPFLRNFFHIGQEFVFSG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           ++      + M  P Y   +       + + VY++  G++    +K    AL     L +
Sbjct: 115 EVSYKSGMMTMTQPEYYTPDKYSELTNVWQPVYTVTPGITSKTIQKAARNALPAASGLVD 174

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
           ++ +D+L +     + EA   IH P    D      A +R+A+DE       +  ++  F
Sbjct: 175 YLPEDVLSEYGIMDLPEAVASIHFP---ADEYHLKLAVKRIAFDEFYGFISDMHRLKSDF 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
                  +    +  ++ +  + F+ T +Q +A++D+L+DMS  + M R++QGDVGSGKT
Sbjct: 232 AGYRNECVISCDEEVRRFIEKLSFTLTNAQMNAVRDMLEDMSSDHVMNRLIQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA + + AA  +G Q VIMAP  +LA QHY+ +    +   I V ++TG+M    +R  
Sbjct: 292 IVAAVGLFAAAVSGWQGVIMAPTEVLAVQHYKELHAQFEPYGISVGLLTGSMTVKEKRLM 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            + I +G   +I+GTHAL QD ++Y +L LV+ DEQHRFGV+QR KLT+K   PH L+M+
Sbjct: 352 YQDIKNGDVSVIVGTHALIQDKVEYNRLGLVVTDEQHRFGVKQREKLTEKGGHPHTLVMS 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +   GD+DIS I E PAGR PIK  ++  +        +   +S+G + Y 
Sbjct: 412 ATPIPRTLAIIMYGDLDISVIDELPAGRIPIKNCVVDESYRKTAQSFIMKEVSKGHQVYI 471

Query: 488 ICPQIEEKKE-SNFRSVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNG 540
           +CP +E  +   +  +V E    L E   S       +  +HG+M   +K +++D F NG
Sbjct: 472 VCPMVEASEVLDDVANVTEYTEELRETLRSQYGGDIQVTCLHGKMKADEKNAILDDFSNG 531

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
           +  +L++TTVIEVGI+  +A+++++ENAE FGLAQLHQLRGRVGRG+  S CI +     
Sbjct: 532 SISILVSTTVIEVGINNPNATVMMVENAERFGLAQLHQLRGRVGRGKLQSYCIFVSGKK- 590

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            K++  RL VL+ + DGF IA EDLK R  G+  GI+QSG   F I     H  +L+ A+
Sbjct: 591 DKDTMERLEVLEKSNDGFYIAGEDLKMRGPGDFFGIRQSGEVMFKIGDIYNHADMLKAAQ 650

Query: 661 K 661
           K
Sbjct: 651 K 651


>gi|229496953|ref|ZP_04390658.1| ATP-dependent DNA helicase RecG [Porphyromonas endodontalis ATCC
           35406]
 gi|229316055|gb|EEN81983.1| ATP-dependent DNA helicase RecG [Porphyromonas endodontalis ATCC
           35406]
          Length = 699

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 232/679 (34%), Positives = 364/679 (53%), Gaps = 21/679 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +    GVG++ S  L   +         F DLL+  P  ++DR     + E+ +  
Sbjct: 6   LQTTIEYLPGVGERKSKLLQSEL-----GVYTFRDLLYTFPFRYVDRSRILTVRELRDGG 60

Query: 69  -IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V + G IS +      ++   K    D TG I L++F + ++ +   F  GR+  V G
Sbjct: 61  GEVQLRGIISDYVLEGFGRKTRLKATFRDDTGSIELVWF-KGSDYISEQFPTGREYIVYG 119

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALSRL 182
           + K   +   +VHP              + +VY         GL     +  I       
Sbjct: 120 RPKAFGHYYNIVHPEVTPIERASQVAGGLLSVYHTSEKMKRSGLDSKNLRNAIGRLCQIA 179

Query: 183 PV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            + + E + +++  +     + +A   IH P+     E    A +RL +DEL   Q++L 
Sbjct: 180 HLYIRETLPEEVRNRWGLIPLPQALYAIHFPKDDATLE---KAVQRLKFDELFFLQLSLQ 236

Query: 242 LMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +K+ K    G   +  G+       ++P+  T++Q+  +++I  D     +M R+LQG
Sbjct: 237 LTKKERKSHFKGYLFDQVGEYFNSYYSSLPYDLTQAQKRVLREIRHDTQSGLQMNRLLQG 296

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKTLVA+ +M  A++ G QA +MAP  ILAQQHYE ++       I V ++TG+ P
Sbjct: 297 DVGCGKTLVAVFSMLLALDNGWQACMMAPTEILAQQHYETLRGQLAPLGIEVALLTGSTP 356

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           Q  R   LE +A G   +++GTHAL ++ +Q+  L L ++DEQHRFGV QR +L +K+  
Sbjct: 357 QRERTTILEDLAQGSLRLLVGTHALLEERVQFAHLALAVIDEQHRFGVVQRARLWEKSLD 416

Query: 421 --PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PHVL+M+ATPIPRTL +T  GD+DIS I E P GRKPI T     +  +EV   ++  
Sbjct: 417 LLPHVLIMSATPIPRTLAMTLYGDLDISVIDELPPGRKPISTRHYFDDFSEEVFRLVEQE 476

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           L  G++ Y + P IE  ++S+++++   +      F    +  +HG++   +K+  M+ F
Sbjct: 477 LFAGRQIYVVYPMIEGTEDSDYKNLETGYEQYRYRFGDRNVTWVHGKLKPQEKQQRMEQF 536

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G   +L++TTVIEVG++V +AS+++IENA+ FGLAQLHQLRGRVGRG E S C+LL  
Sbjct: 537 VSGKIPILLSTTVIEVGVNVPNASVMVIENADRFGLAQLHQLRGRVGRGAEQSYCLLLSK 596

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLL 656
             +S  +  R+  + ++ DGF IAEEDLK R  G+I G +QSG +    +A+P    ++L
Sbjct: 597 RTISPVAIKRIEAMCSSNDGFFIAEEDLKLRGAGDIEGTRQSGDLSGLRLAEPSKDLNIL 656

Query: 657 EIARKDAKHILTQDPDLTS 675
             A +  K IL +D  L  
Sbjct: 657 YAAAQTVKEILERDALLEG 675


>gi|193212054|ref|YP_001998007.1| ATP-dependent DNA helicase RecG [Chlorobaculum parvum NCIB 8327]
 gi|193085531|gb|ACF10807.1| ATP-dependent DNA helicase RecG [Chlorobaculum parvum NCIB 8327]
          Length = 710

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 228/714 (31%), Positives = 371/714 (51%), Gaps = 36/714 (5%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           + L + +GVG K +  L++      A      DL  Y P  ++DR    +I+++ +   V
Sbjct: 9   SSLQSIKGVGPKRAAVLAE------AGIRSVADLYDYFPRRYLDRTVIRRIAQLRDGESV 62

Query: 71  TITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           T+ G ++        + R  +K  ++DG+G + L +F R           G  + V G++
Sbjct: 63  TVVGTVTGTRLEGGGRGRGRFKATVSDGSGVLELTWF-RSVHYFSKSIHSGDMLAVHGRV 121

Query: 130 KKLKNRIIMVHPHYIF-------------HNSQDVNFPLIEAVYSLPT-----GLSVDLF 171
                   M HP Y                + +      I  +Y         G++    
Sbjct: 122 SFFGRTPGMQHPDYDRLGGSGEDGRAEGSADGELYKTGGIIPLYPTSDAMKQGGVNSGTL 181

Query: 172 KKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
           + I+  A   + P + E++  ++++      I EA+  +H P  A+  E     R R+ +
Sbjct: 182 RAIVHRAFRDQPPRITEYLTPEIMEAYGLMPIGEAYRQLHFPDSAELLERA---RYRMKW 238

Query: 231 DELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
            EL   Q+   L R ++ +          G     +   +PF  T  Q+ A+K+I  D+ 
Sbjct: 239 SELFFAQLFFALRRTEERRSLTSARFERSGDKTAGLHERLPFEMTGDQKRAVKEIYHDLR 298

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
             ++M R++QGDVGSGKTLVA  AM  AV+ G QA  MAP  ILA QHY  +K+  +   
Sbjct: 299 SGHQMNRLVQGDVGSGKTLVAQFAMTLAVDNGLQAAFMAPTEILAFQHYIGLKQVLEPLG 358

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + V ++TG   +  R + L R+  G+  I +GTHA+ +  +++ +L L I+DEQHRFGV 
Sbjct: 359 VTVALLTGRQKKKLREEQLARLESGEIDIAVGTHAIIEAGVRFRRLGLAIIDEQHRFGVM 418

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR  L  KA  PHVLLMTATPIPRTL +   GD+D+S I E PAGR+PI+T +   ++  
Sbjct: 419 QRKALQDKAENPHVLLMTATPIPRTLTMGIYGDLDVSIIAEMPAGRQPIQTRLCREDQKP 478

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSD 527
           E+   L+  ++EG++AY + P +EE ++ + ++  E +  L         + +IHG++  
Sbjct: 479 ELYRLLRKQIAEGRQAYIVYPLVEESEKMDLKAATESYEQLRGEVFPELRLGLIHGKLPA 538

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +KE+VM +F++G   +L+ TTVIEVG+DV +A++++IE+AE FG++QLHQLRGRVGRG 
Sbjct: 539 EEKEAVMAAFRSGELDILVGTTVIEVGVDVPNATVMVIEHAERFGISQLHQLRGRVGRGT 598

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLI 646
             SSC L+Y   ++ ++  RL  +  T DGF ++E DL+ R  G +LG +QSG      I
Sbjct: 599 HRSSCYLVY-AKMAGDAKERLQAMAATNDGFRLSEIDLQLRGAGNMLGREQSGTASSLRI 657

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A       ++  AR  A  ++ +D  L+      +R   + + + +       G
Sbjct: 658 ADLMTDGEIMRSARAAAFELVEKDETLSHPEHARLRDYYHTH-FRKRISLADVG 710


>gi|225572202|ref|ZP_03781066.1| hypothetical protein RUMHYD_00496 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040374|gb|EEG50620.1| hypothetical protein RUMHYD_00496 [Blautia hydrogenotrophica DSM
           10507]
          Length = 685

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 226/682 (33%), Positives = 367/682 (53%), Gaps = 19/682 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +GVG+K      ++      N     DLL Y+P ++        I ++ E  + T+
Sbjct: 7   LRDIKGVGEKTEQLFGRL------NLQTTEDLLHYYPRNYEVYAPAVPIGQLKENAVQTV 60

Query: 73  TGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G+I+  + S Q++        +     +++L +F+     L+    +G      G++ K
Sbjct: 61  AGFIASKAASAQVRNLNILTTSIVSEGEKLSLTWFH--APYLRKTLKQGSYFVFRGRVVK 118

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
              R++M HP      + +     ++ +Y L  GL+     K +   L    +  E++  
Sbjct: 119 KNGRMVMEHPEIFTPAAYEEILNRMQPIYGLTAGLTNKTVTKYVRLLLENQALEGEYLPL 178

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           D+ ++        A   IH P   KD +    AR RL +DE L   +++ +++++ +  +
Sbjct: 179 DVRERYRLADYNFAIQNIHFP---KDRDSLIAARSRLVFDEFLFFILSVWMLKEKTQSAV 235

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                      +K+L N+P+  TK+Q +  +++ QD+ +   M R++QGDVGSGKT++A 
Sbjct: 236 NYYPMKPVWETEKLLENLPYRLTKAQRNVWREVEQDLCRDRLMSRLIQGDVGSGKTILAF 295

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ---IIVEIITGNMPQAHRRKAL 368
           +AM    + G QA +M P  +LA QHY+ +               ++TG+     +R+  
Sbjct: 296 LAMILTAQNGYQAALMVPTEVLAVQHYKALCGLLSEHGLGDCRPILLTGSTTAKEKRERY 355

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            +IA G+ ++I+GTHAL Q+ ++Y+KL LVI DEQHRFGV+QR  LT +   PHVL+M+A
Sbjct: 356 AQIASGEVNLIVGTHALIQEKVEYHKLALVITDEQHRFGVRQREALTTRGAVPHVLVMSA 415

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +   GD+DIS I E PA R PIK  ++  +   +  + ++  +  G++AY I
Sbjct: 416 TPIPRTLAIILYGDLDISVIDELPASRLPIKNCVVNTSYRPKAYQFMEKQILMGRQAYVI 475

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP +EE +  +  +V+E    L   F   I+I  +HG+M   +K  +M+ F  G  K+L+
Sbjct: 476 CPMVEESEGLDVENVLEYTQKLKSIFPPEISICSLHGKMKPKEKNQIMEDFSAGKIKILV 535

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRG E S CI +      K    
Sbjct: 536 STTVVEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGTEQSYCIFM--QGNDKEVSK 593

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL +L  + DGF IA EDLK R  G++ GI+QSG  +F +A       LL+ A + A+ I
Sbjct: 594 RLKILGQSNDGFFIASEDLKLRGPGDLFGIRQSGEMQFQLADIYQDSGLLKSASEAARDI 653

Query: 667 LTQDPDLTSVRGQSIRILLYLY 688
           L  D  L   +   ++  L  Y
Sbjct: 654 LDLDSCLELPQYFKLKEKLAKY 675


>gi|167769311|ref|ZP_02441364.1| hypothetical protein ANACOL_00636 [Anaerotruncus colihominis DSM
           17241]
 gi|167668279|gb|EDS12409.1| hypothetical protein ANACOL_00636 [Anaerotruncus colihominis DSM
           17241]
          Length = 680

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 230/682 (33%), Positives = 352/682 (51%), Gaps = 23/682 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++T RGVG++ +  L+++            DLL ++P  +ID     ++     +++  
Sbjct: 8   SVATLRGVGEQRAQALARL------GIVTVEDLLLHYPRGYIDLTAPCEVMSAPLDQVCA 61

Query: 72  ITGYISQH--SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           +   + +    +      R YK++  D +G + L FF   T+   +           G++
Sbjct: 62  VRATVIKKGRETRLRGGLRLYKVIAADDSGVLELTFFN--TKFTVDALKIDEPYLFYGRM 119

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
           +    R  M  P       +  + P I AVY L  GL+   F  ++ +AL+R P LPE I
Sbjct: 120 EGTLLRREMRAPAVY---PERADQPFI-AVYPLTEGLTQKAFANLVEQALARAPRLPERI 175

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            + +        I +A   IH P  A   E     + RL ++EL      + L+R + + 
Sbjct: 176 PETVRAGNGLEGIGQAVRDIHRPSDAAALERA---KRRLIFEELFMLAAGVGLLRTRART 232

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E   P+       +     +PF  T +Q  AI D+  D+ +     R++QGDVGSGKT+V
Sbjct: 233 EQAAPMQPHS--LKAFYTALPFELTGAQRRAIADLTDDLQKPTPANRLVQGDVGSGKTMV 290

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A      A  +G Q+ +MAP  +LA+QHYE +K   +   +   ++ G++  A +R    
Sbjct: 291 AAAGAYFAFLSGAQSAMMAPTELLARQHYEGLKPLCEKLGMKTALLIGSLTPAQKRAVYN 350

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +  G+  +  GTHAL    + +  L LVI DEQHRFGV QR KL +K    H L+M+AT
Sbjct: 351 ALETGEIDLCFGTHALISQGVHFMNLGLVITDEQHRFGVAQRAKLRRKGRCAHTLVMSAT 410

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L   G++DIS I E P GR P+ T  I   + +     ++  L  G +AY +C
Sbjct: 411 PIPRTLALMIYGELDISVIDELPPGRSPVLTYKISSGKRERAFGFIRKHLDRGLQAYIVC 470

Query: 490 PQIEEKKESNF-RSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           P++E  +E     +  E    L        ++ ++HGRM   +KE VM+SF+ G  +LL+
Sbjct: 471 PRVEAGEEDMGLHAATEYMMDLSSGAFTGYTVGLLHGRMKASEKERVMESFQRGEIQLLV 530

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG+DV +A I++IENAE FGL+QLHQLRGRVGRG+E S CILL     S+ +  
Sbjct: 531 STTVVEVGVDVPNAVIMMIENAERFGLSQLHQLRGRVGRGKEQSYCILL-SDSRSEETVE 589

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL ++  T DGF IAE DLK R  G  LG +Q G+P+  IA        +  AR+ A++I
Sbjct: 590 RLKIMCKTSDGFAIAEYDLKTRGPGNFLGQEQHGLPRLRIADLVTDADTVTQARESAEYI 649

Query: 667 LTQDPDLTSVRGQSIRILLYLY 688
           L  DP L +    ++R  +   
Sbjct: 650 LAADPTLCAPEHAALRAAVERM 671


>gi|253578691|ref|ZP_04855962.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849634|gb|EES77593.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 684

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 227/684 (33%), Positives = 377/684 (55%), Gaps = 18/684 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             L T +GVG+K     +KI        T    LL Y+P ++       +I  + E  +V
Sbjct: 3   TSLRTLKGVGEKTEKLFAKI------GVTDMESLLSYYPRNYDAYEEPVEIRSLEEGAVV 56

Query: 71  TI-TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            I    I+     Q++  +     + D TG+I++ +F      L++   +G +  + G++
Sbjct: 57  AISVAVITGVYVNQVRNLQVITTTVADLTGKISVTWFN--APYLRSAVRKGSRFVLRGRV 114

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            + + ++ M HP      + +     ++ +Y L  GLS     K+I + L    +  E++
Sbjct: 115 VRKQGKLQMEHPEIFTPAAYEEILHSLQPIYGLTAGLSNKTIVKLIHQVLDEQKLQTEYL 174

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             +  ++        A   IH P+  ++       R RL +DE L   +A+  ++++ ++
Sbjct: 175 ADEYKERYHLADRNFAIPAIHFPKNMQELLAA---RRRLVFDEFLLFILAVQSLKEKTEE 231

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                        ++I+ ++P+  TK+Q +   +I +D+S +  M R++QGDVGSGKT++
Sbjct: 232 APNAFPMHPVWTTEQIIESLPYDLTKAQLNVWHEIERDLSGQALMSRLVQGDVGSGKTIL 291

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI---IVEIITGNMPQAHRRK 366
           A +AM   VE G QAV+MAP  +LA+QH++ ++K  Q   I      ++TG+     +R+
Sbjct: 292 AFLAMIMTVENGYQAVLMAPTEVLARQHFQAMEKLLQEQNIDFGHPVLLTGSDTAKEKRE 351

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
               IA  +A+++IGTHAL Q+ +QY  L LVI DEQHRFGV+QR  LT     P+VL+M
Sbjct: 352 KYVLIASKEANLVIGTHALIQEKVQYNNLGLVITDEQHRFGVKQREALTTMGNPPNVLVM 411

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL +   GD+DIS I E PA R PIK  ++  +   +    ++  + +G++ Y
Sbjct: 412 SATPIPRTLAIIIYGDLDISVIDELPAQRLPIKNCVVDTSYRPKAYSFMEKQIRQGRQVY 471

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP +EE +  +  +V++    L   F+    IA +HG+M   +K  +M++F  G  ++
Sbjct: 472 VICPMVEESEGMDGENVLDYTLKLRNVFSPDIKIASLHGKMKAKEKNVIMEAFAAGEIQI 531

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE  S CI +     +K  
Sbjct: 532 LVSTTVVEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEYQSYCIFM-QGNGAKEI 590

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL +L  + DGF IA EDLK R  G++ GI+QSG+ +F +        +L+ A + A 
Sbjct: 591 SKRLQILNKSNDGFYIAGEDLKLRGPGDLFGIRQSGLLEFKLGDIYQDADILKAASETAS 650

Query: 665 HILTQDPDLTSVRGQSIRILLYLY 688
            IL+ D DL+  + + ++  L  Y
Sbjct: 651 EILSLDGDLSLPQNEELQRRLSAY 674


>gi|23098975|ref|NP_692441.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
 gi|22777203|dbj|BAC13476.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 676

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 231/681 (33%), Positives = 369/681 (54%), Gaps = 21/681 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +  P++  +G+G+K +  L+        N     D+L Y P  + D   +  + E+  + 
Sbjct: 2   IQKPVTEVKGIGEKVAEQLA------TMNIYTVEDMLEYFPYRY-DIFEKKPLHELIHDD 54

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            VTI G +    S     R+  ++        + +          K        IT+TGK
Sbjct: 55  KVTIEGIVVHDPSLTFYGRKKSRLTFTVEVDGVAVKAVMFNRSFAKKQITSQSWITLTGK 114

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPE 187
               +  + +   +Y     ++ +   I+ +YS+    +   F+K+I   L   +  + E
Sbjct: 115 WDAHR--LQITVSNYQLGRMEEKS--AIKPIYSVKGDFTSYKFQKLISNTLKDSVTEIKE 170

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL-MRKQ 246
            +    L +   PS   A   +H P+   +      AR R  Y+E L  Q+ + L  +K 
Sbjct: 171 ILPATYLDQYKLPSRENAVKTMHFPKDRVEL---KHARRRFIYEEFLLFQLKMQLFRKKH 227

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            +   G   + + +     +++ PF  T +Q  A+K IL DM   +RM R+LQGDVGSGK
Sbjct: 228 RESTTGNRQDFDQEKLTSFIKSFPFKLTDAQNRALKQILNDMKDPHRMNRLLQGDVGSGK 287

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T VA I + A+V +G Q  +M P  ILA+QH++ +++        + ++TG++    RR+
Sbjct: 288 TAVAAICLYASVTSGQQGALMVPTEILAEQHFQSLQQMFGERA-EIALLTGSVKGKKRRE 346

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E+I + +  I+IGTHAL Q  + +  L LVIVDEQHRFGV+QR  L  K   P VL M
Sbjct: 347 LTEKIENQKIDIVIGTHALIQGDVFFKNLGLVIVDEQHRFGVEQRRVLRDKGLHPDVLFM 406

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL +T+ GD+D+S I + P+GRK I+T+ +  N  D +++ ++  + EG++AY
Sbjct: 407 TATPIPRTLAITAFGDMDVSVIDQLPSGRKEIETLWVKANTFDRILDFVRKRVDEGEQAY 466

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            I P IEE  + + ++ VE ++ L  +++    I ++HGR++  +KE VM  F     ++
Sbjct: 467 VISPLIEESDKLDIQNAVELYHQLEAYYSDDIRIGLMHGRLTANEKEDVMRQFAENKIQV 526

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVG++V +A+I+II +AE FGL+QLHQLRGRVGRGE+ S CIL+  P   +  
Sbjct: 527 LVSTTVVEVGVNVPNATIMIIYDAERFGLSQLHQLRGRVGRGEKQSYCILIAEPK-GEIG 585

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ ++  T DGF ++E+DL+ R  G+  G KQSGMP+F +A        LE AR DA 
Sbjct: 586 KERMRIMTETTDGFELSEQDLQLRGPGDFFGKKQSGMPEFKVADMVHDYRALETARDDAS 645

Query: 665 HILTQDPDLTSVRGQSIRILL 685
            IL  +  L     Q +R +L
Sbjct: 646 IILENNL-LEEEDYQQVRSIL 665


>gi|302874760|ref|YP_003843393.1| ATP-dependent DNA helicase RecG [Clostridium cellulovorans 743B]
 gi|302577617|gb|ADL51629.1| ATP-dependent DNA helicase RecG [Clostridium cellulovorans 743B]
          Length = 687

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 228/668 (34%), Positives = 365/668 (54%), Gaps = 20/668 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +++ +   +GVG K    L+K      +     +DLL Y P  + +      I+ I+ + 
Sbjct: 9   IYSDIKNLKGVGPKALQLLNK------SGIYNLLDLLLYFPREYENITSSEDITNINGKE 62

Query: 69  IVTITGYISQH--SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            + I   + +          +    I  +DG       +F +    +K  +F  ++ T+ 
Sbjct: 63  KLKIKCKVLRIFPDKRTKTGKTITTIAFSDGENTFYGKWFNQ--PYVKKKYFIDKEYTLI 120

Query: 127 GKIKKLKNRIIMVHP-HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           G++KK+     + +P  +     ++ +   I   Y L  GL+ + F K+I   L  +  +
Sbjct: 121 GEVKKVGKDYEISNPKDFKEKEDKEKSDKNIIPKYPLKAGLTNNFFIKLITSILEAM-FI 179

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E + + +++K    S+  A   IH P++            RL + EL    + +L++++
Sbjct: 180 RENLPEWIIEKYKLCSLDYAIRNIHYPKEENALRAAE---RRLKFQELFTYSLKILMLKE 236

Query: 246 QFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
             K     I   +  ++   +  ++PF  T +Q  A+++IL DM +   M R+LQGDVGS
Sbjct: 237 YVKSNKEGIAFKIAPELVD-LKNSLPFQLTDAQSKAVREILSDMKKPTPMNRLLQGDVGS 295

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VALIA+  A +   Q V+MAP  ILA QHY    +      I +E++TG+  +  +
Sbjct: 296 GKTIVALIALFNAAKNQYQGVLMAPTEILANQHYHEFIRIMAPFNIKIELLTGSTTKKQK 355

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
            +  E I  G+  I+IGTHAL +D +Q+  L +++ DEQHRFGV QR KL  K     VL
Sbjct: 356 ERIKEEIKGGKIDILIGTHALIEDDVQFENLGIIVTDEQHRFGVMQRNKLFNKGKNIDVL 415

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL L   GD+++S I + P GR+ I+T      + D + E  K  + EG++
Sbjct: 416 VMTATPIPRTLALYLYGDLEVSIIDQLPPGREKIETKHGTKKQRDNIYEFSKKSIKEGRQ 475

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP +E+ +  + +SV   F  L E +    ++  IHG+MS  DK+ VM+ FKN   
Sbjct: 476 VYVVCPLVEDNEVLDLKSVEALFIELKESYFKDYNVGFIHGKMSPKDKDKVMNEFKNKET 535

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+ATTVIEVGI+V +A+I+IIENAE FGLAQLHQLRGRVGRG+  S C L+     SK
Sbjct: 536 QILVATTVIEVGINVPNANIMIIENAERFGLAQLHQLRGRVGRGQYKSYCFLIADTK-SK 594

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  R+ +++ + DGF IAEEDLK R  GE+ G++QSG    L++      ++L+ A K+
Sbjct: 595 VTEKRMKIMEQSNDGFFIAEEDLKIRGTGEVFGLRQSGENGLLLSDVIEDINILKCANKE 654

Query: 663 AKHILTQD 670
           AK ++  +
Sbjct: 655 AKELVASE 662


>gi|212550469|ref|YP_002308786.1| ATP-dependent DNA helicase RecG [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548707|dbj|BAG83375.1| ATP-dependent DNA helicase RecG [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 707

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 241/672 (35%), Positives = 378/672 (56%), Gaps = 27/672 (4%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEER---IVTITGYISQHSSFQLQKRRPYKI 92
            N   + DLL+Y P  + DR    KISEI + R    + + G I ++      K R    
Sbjct: 26  INVFSWKDLLYYFPYRYTDRSKIHKISEI-DGRSMPFIQLKGKIFRYEYLGEGKSRRLSA 84

Query: 93  LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK---------NRIIMVHPHY 143
           + +DGTG I L++F R    +  ++  GR+  + GK    +          RI ++HP  
Sbjct: 85  VFDDGTGVIELIWF-RSLTWITKMYKLGREYILFGKPSTFRLSTPSGSSLERISIIHPEL 143

Query: 144 IFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKK 197
              N        I+  YS         L     K++I+E L  +   L E + ++++ + 
Sbjct: 144 EEENKFYEGVIGIQGEYSTTEKMKKVSLHSRTIKQMIIEILENIKEPLSETLSREIINEY 203

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIGIPIN 256
              S+ EA   IH P+     +     + RL ++EL   Q+++L   + + K   G    
Sbjct: 204 KLISLDEAIRNIHFPKSNDLLQEA---QYRLKFEELFYLQLSILSAAKHREKHIDGFRFK 260

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             G+    +  N+PF  T +Q+  + +I ++M+   +M R+LQGDVGSGKTL+AL+++  
Sbjct: 261 EIGENFYFLKNNLPFELTTAQKRVVNEIWKNMNTGKQMNRLLQGDVGSGKTLIALLSILL 320

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           A + G Q  IM P  +LA QHYE I +    + I V ++TG+     R + L ++  G+ 
Sbjct: 321 ATDNGFQGAIMVPTEVLAIQHYETISRMLNGSAIKVSLLTGSTKNKLREEMLPKVKSGEI 380

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAPHVLLMTATPIPRTL 435
            I+IGTHAL +DS+++  L LV+VDEQHRFGV QR KL  + +  PHVL+MTATPIPRTL
Sbjct: 381 QILIGTHALIEDSVEFNNLGLVVVDEQHRFGVTQRAKLWNKNSNPPHVLVMTATPIPRTL 440

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +T  GD+D+S I E P GRKP+ T      + D++ E ++  + +GK+ Y + P IEE 
Sbjct: 441 AMTIYGDLDVSIIDELPPGRKPVDTYHRYDEKRDKIYEYVRKEIQKGKQVYIVYPLIEEN 500

Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           ++ +  ++ + F ++ + F   +I ++HG+M   +K+  M  F +G  ++++ATTVIEVG
Sbjct: 501 EKIDLTNLQDGFQAVSKVFPEYNICMVHGQMKPEEKKQEMQKFLSGEAQIMVATTVIEVG 560

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV +AS++II+NAE FGL+QLHQLRGRVGR  E + CIL+ +  LS+++  R++++ N 
Sbjct: 561 IDVRNASVMIIKNAERFGLSQLHQLRGRVGRSTEQAVCILMTNHELSEDARKRITIMTNF 620

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            +GF+IAEEDLK R  G + GIKQSG      IA+      +L+  R  A+ IL  DP+L
Sbjct: 621 NNGFIIAEEDLKLRGPGSLNGIKQSGFDSNLKIARLSQDGDILDYTRNLARRILDDDPNL 680

Query: 674 TSVRGQSIRILL 685
              +   ++  L
Sbjct: 681 EKPQNILLKQHL 692


>gi|157413185|ref|YP_001484051.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
           9215]
 gi|157387760|gb|ABV50465.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT
           9215]
          Length = 817

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 237/692 (34%), Positives = 379/692 (54%), Gaps = 29/692 (4%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           + +S  + VGK Y   L+++            DL+ Y P +++D   R KI  +  + + 
Sbjct: 124 SDVSLIKNVGKVYKNKLNEL------GIFHIKDLINYFPRTYLDYTNRVKIINLKPDNLY 177

Query: 71  TITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVFFE 119
           T    I +    + +K     I+   ++D T  I +  F+              K+++  
Sbjct: 178 TCIANIKRFYIHKSKKNSNLSIMNFVVSDETSSIKVTKFFLGRRFRSYSFFSSQKSLYTP 237

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF---PLIEAVYSLPTGLSVDLFKKIIV 176
           G K+ ++GK+K  +     V P        + NF     I  +YSL   LS   F K++ 
Sbjct: 238 GTKLAISGKVKLTEYGKTFVDPQIEILKGINDNFNYSGKILPLYSLGEALSNMSFIKLMK 297

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           + L      PE + K  L   S  S  E+   IH P   +    +   ++RL +DEL   
Sbjct: 298 KVLIYAKQYPEILNKKQLDSLSLLSKGESLINIHFPLTQQALLES---KKRLVFDELFLL 354

Query: 237 QIALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           QI  LL +++  K  I   +  +  + ++ L   PF  TKSQE+ + +I +D+S    M 
Sbjct: 355 QIKFLLRKRKTNKNVISQQLPQKKSLLKEFLNTFPFELTKSQENVLNEIKKDLSNALPMS 414

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKT++A+ ++   +E   Q   + P  +LA+QHY+ + KY     + VE++
Sbjct: 415 RLLQGDVGSGKTIIAIASLLLVIEKNQQGAFLVPTEVLAEQHYKNLLKYLDPLLVSVELL 474

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TGN PQ  R++    + +G   I++GTHALF+D + +  L +V++DEQHRFGV QR +L 
Sbjct: 475 TGNTPQKKRKEIFSNLNNGLVDILVGTHALFEDKVIFNALGMVVIDEQHRFGVSQRNRLL 534

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K    ++L MTATPIPRTL L+  GD+D+S+ITE P GR PI T II  + + ++ + +
Sbjct: 535 NKGENTNLLSMTATPIPRTLALSIYGDLDVSQITELPPGRVPITTKIISEDDLSKLFKIV 594

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH--FTSSIAIIHGRMSDIDKESV 533
              +++G++AY I P IE+ ++ N  S  + F  L E   F   + ++HG+++  +K  V
Sbjct: 595 DDEITKGRQAYVILPLIEDSEKMNLSSAKKIFKYLSEEVFFNKKVGLLHGKLNSQEKNEV 654

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           ++SF      +L++TTVIEVGIDV +A+I+II N++ FGL+QLHQLRGRVGRG   S C 
Sbjct: 655 INSFIENEINILVSTTVIEVGIDVPNATIMIIYNSDRFGLSQLHQLRGRVGRGSTKSFCY 714

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+        +     VL+ + DGF IAE+DL+ R  G+ILG +QSG+P F++     + 
Sbjct: 715 LVTSDKNGLENKRLC-VLQKSNDGFYIAEKDLELRGPGQILGYRQSGLPDFVLDNLPNNK 773

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            L++ AR++A  +++ DPDL       +R +L
Sbjct: 774 FLIDKAREEAIKVVSDDPDL--KENIVLRNIL 803


>gi|120609293|ref|YP_968971.1| ATP-dependent DNA helicase RecG [Acidovorax citrulli AAC00-1]
 gi|120587757|gb|ABM31197.1| ATP-dependent DNA helicase RecG [Acidovorax citrulli AAC00-1]
          Length = 708

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 231/702 (32%), Positives = 357/702 (50%), Gaps = 55/702 (7%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
             L K+        +R IDL  + P  + D      +  + +     I   ++  S  QL
Sbjct: 11  KALQKL------GLSRDIDLALHLPLRYEDETRITPLRNVRDGDTAQIEATVTA-SEVQL 63

Query: 85  QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
           + RR   + ++DGTG   L FF       K     G ++ + G++K       M+HP + 
Sbjct: 64  RPRRQLVVTVDDGTGTCELRFFSFYPSHQK-TLAVGARLRIRGEVKGGFWGRQMLHPAFR 122

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK-------- 196
               +      +  VY    GL     ++ IV AL R+  L E I   L           
Sbjct: 123 LAGGELP--AALTPVYPTTAGLPQPYLRRAIVSALQRVD-LSETIPPGLEPPIPRFLGEG 179

Query: 197 ---KSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              +S+ ++ +A   +H+P          + + PA +RL  +ELLA Q++ L  +++  +
Sbjct: 180 GGGRSWWTLRDALVFLHHPTPDVALATLEDHSHPAWQRLKAEELLAQQLSQLEAKRERDR 239

Query: 250 EIGIPINVEG------KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
                +           + +++L  +PF  T +Q     +I  D+++   M R+LQGDVG
Sbjct: 240 LRAPVLRPAPGGEGGAALHERLLAALPFGLTAAQRRVCAEIAADLARAVPMHRLLQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN----TQIIVEIITGNM 359
           SGKT+VA ++ A  ++AG Q  +MAP  ILA+QH+  +  + +     +   V  + G  
Sbjct: 300 SGKTVVAALSAAVCMDAGWQCALMAPTEILAEQHFRKLIGWLEPLLAASGRRVAWLAGGQ 359

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT---- 415
            +  R   L  +  G+A +++GTHA+ Q+ +++  L L ++DEQHRFGV QRL L     
Sbjct: 360 KKKERAAMLALVESGEAALVVGTHAVIQEQVRFRNLALAVIDEQHRFGVAQRLALRRKLA 419

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            +   PH+L+M+ATPIPRTL ++   D+D+S I E P GR PI T +I  +R DEVIER+
Sbjct: 420 DQGMEPHLLMMSATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVIERI 479

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---------IAIIHGRMS 526
              ++ G++ YW+CP IEE +  +  +       L E              + ++H RM 
Sbjct: 480 GAQVASGRQVYWVCPLIEESEALDLSNATATHLELSEALQGDPAHGQAPVMVGLLHSRMP 539

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K++VM+ F  GT  +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG
Sbjct: 540 PAEKKAVMELFTAGTMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRG 599

Query: 587 EEISSCILLYHP----PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
              S+C+LLY       L + +  RL  +  T+DGF IA  DL+ R  GE LG +QSG P
Sbjct: 600 SAASACVLLYSTGESGRLGETARDRLRAMAETQDGFEIARRDLEIRGPGEFLGARQSGAP 659

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
               A       LLE AR+ A  +L   P     R    R L
Sbjct: 660 MLRFADLATDTLLLEWARETAPRMLDGHPG--DARRHVGRWL 699


>gi|89895420|ref|YP_518907.1| hypothetical protein DSY2674 [Desulfitobacterium hafniense Y51]
 gi|89334868|dbj|BAE84463.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 693

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 246/676 (36%), Positives = 375/676 (55%), Gaps = 31/676 (4%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP+  +P  + L   +GVG + +  L++I            DL FY P  + DR     I
Sbjct: 23  RPAKPSPPRS-LQFLKGVGPERAKLLAQI------GLHTVKDLFFYFPRRYEDRS-LQSI 74

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            E+ +  + ++ G +         K +  K+ +      +  ++F +    +   +  G 
Sbjct: 75  GELKDGELASVAGKVVAGQ-IARGKLKVVKLSIEQDGRLVYAVWFNQ--TYILKQYPVGT 131

Query: 122 KITVTGKIKKLKNRIIMVHPHYI---FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            + VTGK++          P         +       I  VYS    LS  + + I+   
Sbjct: 132 SVIVTGKVR-----WQQRVPEIQATDIQKAGAAQPAAILPVYSETARLSSKVIRTIVQGV 186

Query: 179 LSRLPVL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L + P L PE++  +  + K +   A+A+  IH PR    F     ARERL ++E+L  Q
Sbjct: 187 LDQAPELFPEFLPPE--EGKGWVPRAQAYQEIHFPRT---FHSLGQARERLVFEEVLFLQ 241

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +++  +R   ++E    +     + Q+ L N+PF  T++Q+  I++I +DM+    M R+
Sbjct: 242 LSVARLRSGVQRENSPQLKSGESLVQRFLANLPFELTQAQKRVIQEIFRDMANTQGMARL 301

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT VA+ A+  AV +G Q  +MAP  ILA QHY+ +        + V  + G
Sbjct: 302 VQGDVGSGKTAVAMAALLMAVGSGYQGAMMAPTEILALQHYQSLAAAFTPLGLHVVCLLG 361

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           +  ++ R K L  IA+G+AH+I+GTHAL Q+S+Q++ L L I DEQHRFGV+QR  L  K
Sbjct: 362 SQTKSERDKILTEIAYGKAHVIVGTHALIQESVQFHSLGLAITDEQHRFGVKQRTSLQTK 421

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PHVL++TATPIPRTL LT  GD+ +S + E P GRKPI T  +       + + ++ 
Sbjct: 422 GENPHVLVLTATPIPRTLALTLYGDLQLSALDEMPQGRKPIMTRKLTERGRPSLEKFMEE 481

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            + +G++ Y +CP +EE +  +  S  ERF SL E F +  ++++HGRM  + KE +MD+
Sbjct: 482 QMEKGRQIYVVCPLVEESENVDLISATERFQSLQERFPNRRVSLLHGRMKGVQKEEIMDA 541

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G   +L++TTV+EVG++V +A++++IE AE FGLAQLHQLRGRVGRG E S C LL 
Sbjct: 542 FQKGEVDILVSTTVVEVGVNVPNATVMVIEGAERFGLAQLHQLRGRVGRGSEQSYCFLLS 601

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
               S     RL VL  T+DGF IAEEDLK R  GE+LG +Q G+ +  +A       L+
Sbjct: 602 DAKNS----RRLEVLCETQDGFKIAEEDLKIRGAGELLGTRQHGVMELRLADLSRDGRLV 657

Query: 657 EIARKDAKHILTQDPD 672
           E A + A+ +LT  PD
Sbjct: 658 EQAYQLAQKVLTH-PD 672


>gi|90961599|ref|YP_535515.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118]
 gi|90820793|gb|ABD99432.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118]
          Length = 676

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 233/698 (33%), Positives = 387/698 (55%), Gaps = 32/698 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   RGVG K    L+K+            DLL ++P  + D      + EI+ + 
Sbjct: 3   LGDSVGVLRGVGPKKIQALNKL------GVNTIEDLLTFYPFRYNDI-AVKNLEEINSQE 55

Query: 69  IVTITGYISQHSS-FQLQKRR---PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            VT+ G ++      +  +++    +K+L+N     I + FF +    +      G+++ 
Sbjct: 56  KVTLKGIVASEPVLVRFGRKKSRLNFKLLINHD--VIGVTFFNQ--PWISKQVTTGQELA 111

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           V GK   L+  +  +    I   + D        VY     +   + K+++ +A      
Sbjct: 112 VYGKYDALRQSLSGIK--IISRKTND-----FVGVYRSSKDIKESIIKQLVKQAYDEYNS 164

Query: 185 -LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + + + +  K    +  +  + IH P   K+ +     R    +DE  + +  L L+
Sbjct: 165 YIKDVVPESIRIKYRLENRKQMIHDIHFPSTKKEADLA---RRSAIFDEFFSFEAGLQLL 221

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++   K +G+ I    +  ++ ++ +PF  TK+Q+  + +I  DM   N M R+LQGDVG
Sbjct: 222 KRDNHKNMGLRIKYNNEKLKEFIKGLPFELTKAQKRVVNEICADMLSPNHMNRLLQGDVG 281

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN--MPQ 361
           SGKT++A IAM A V AG QAV+MAP  ILAQQH E +    +   I V ++T +     
Sbjct: 282 SGKTIIAAIAMYATVTAGFQAVLMAPTEILAQQHAEKLANLFEQYGISVALMTSSSLSRV 341

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +R+ L+ + +G   I+IGTHA+ QD+I+++ L L I DEQHRFGV QR  L +K   P
Sbjct: 342 KVKRELLKHLKNGDIDIVIGTHAVIQDNIEFHNLGLAITDEQHRFGVNQRRILRKKGVNP 401

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L MTATPIPRTL +T+ G++D+S I E P GR+P+KT  +   ++  V E +K  L  
Sbjct: 402 EILAMTATPIPRTLAITTYGEMDVSIIDELPKGRQPVKTSWVKKKQVKNVFEFVKRQLEL 461

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNG 540
           G +AY I P +EE +  + ++  E F    E+F +  +A++HG+M   +KE  M +FKN 
Sbjct: 462 GTQAYIISPLVEESELLDLQNAEEVFEKAKEYFGSEKVALLHGKMDANEKEQAMQAFKNK 521

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG+DV +A+++II +A+ FGLAQLHQLRGRVGRG + S CIL+  P  
Sbjct: 522 EVSILVSTTVIEVGVDVPNATVMIILDADRFGLAQLHQLRGRVGRGSKESYCILVADPK- 580

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    R+ ++  T DGFLI+++DL+ R  GE+LG KQSG+P+F +  P ++ ++L++A+
Sbjct: 581 SEYGKERMKIMTETNDGFLISQKDLELRGPGEVLGKKQSGLPEFKVGDPVVNLNILQVAQ 640

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
           ++A +++   P+  +   ++  ++ YL +     + I 
Sbjct: 641 EEAHNVVFS-PNFETKE-ENFELIKYLNRQFAQEEIID 676


>gi|219850480|ref|YP_002464913.1| ATP-dependent DNA helicase RecG [Chloroflexus aggregans DSM 9485]
 gi|219544739|gb|ACL26477.1| ATP-dependent DNA helicase RecG [Chloroflexus aggregans DSM 9485]
          Length = 862

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 236/743 (31%), Positives = 385/743 (51%), Gaps = 70/743 (9%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L A L    GV  +      +I            DLL++ P  + D   R  I E+    
Sbjct: 132 LDAKLDQIAGVDSRTVASFRRI------GVVTIRDLLYHFPRRYDDVRSRRTIDELQVGA 185

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
             T+ G ++   +     +   ++ ++D TG I  +FF ++   +      G+ I ++GK
Sbjct: 186 EETVIGEVTDVRTIGTGPKLRVRVEVSDETGSIEAIFFNQR--WIAQQIRVGQTIVLSGK 243

Query: 129 IKKLKNRIIMVHPH---YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PV 184
           +     +     P    Y       ++   +  ++ L  GL  +  +++I + +  + P 
Sbjct: 244 VTVFGGKRQFTSPRWERYTPDPDALLHTGRLVPIHPLTQGLHENQARRLIKQVVDTVAPR 303

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           +P+ +  +   +     + EA   IH P   +     + AR RL +DE L  Q+ +L  +
Sbjct: 304 IPDHLPPERCAQAGLLPLGEALTQIHFPTNHESL---AAARRRLGFDEFLFIQLGVLQRK 360

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           + +++E+G+P  ++ ++  ++LR +PF  T +Q+ AI +I  D+ + + M R+LQGDVGS
Sbjct: 361 RLWQQEMGLPFTIDLQVHAELLRLLPFRLTAAQQRAINEIFADLQRPSPMARLLQGDVGS 420

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK---------------------- 342
           GKT+VA  A+  AV  G Q  +MAP  ILA+QH + +K                      
Sbjct: 421 GKTVVAAAALLQAVANGFQGALMAPTEILAEQHAKNLKQLLSRVPVPRRSSEAMDGEQYR 480

Query: 343 ----------------------------KYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                                       +      + V ++TG++    RR+ L+ IA G
Sbjct: 481 QTDWRAQLDPEEAARLNEIVQIIGMTPEEDMGGHGVRVALLTGSLGTRERRRVLDGIARG 540

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           +  +++GTHAL  +++Q+ +L LV+VDEQHRFGV+QRL+L  K   PH+L+MTATPIPRT
Sbjct: 541 EIDVVVGTHALITETVQFARLGLVVVDEQHRFGVEQRLRLKNKGCNPHMLVMTATPIPRT 600

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L LT  GD+D+S + E+P GR+ I+T  I     ++    ++  ++EG++ Y ICP +EE
Sbjct: 601 LTLTIYGDLDVSVLDERPPGRQEIRTRRISRLEREKAYRHIRKQVAEGRQVYVICPLVEE 660

Query: 495 KKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            ++ +  S  E +  L         +A++HG+MS  +K+ VM +F++    +L++T VIE
Sbjct: 661 SEKLDLPSAEEMYEKLQHEVFPDLRVALLHGKMSAREKDGVMRAFRDHQYDILVSTAVIE 720

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VGIDV +A+ I+IE AE FGLAQLHQ RGRVGRG   S CIL+     ++ S  RL+ L+
Sbjct: 721 VGIDVPNATTIVIEGAERFGLAQLHQFRGRVGRGSHQSYCILISDSD-NQQSKERLAALE 779

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            T DGF +AE DL+ R  GE  G +QSG P   +A+ +    LL  AR+ A+ IL+ DP 
Sbjct: 780 QTNDGFQLAEFDLQLRGPGEFFGTRQSGTPDLKMAR-QGDTRLLSEARRMAEAILSDDPA 838

Query: 673 LTSVRGQSIRILLYLYQYNEAFQ 695
           L       +R  +  + + EA +
Sbjct: 839 LERPEHALLRRRVDAF-WTEAMR 860


>gi|307690625|ref|ZP_07633071.1| ATP-dependent DNA helicase RecG [Clostridium cellulovorans 743B]
          Length = 681

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 228/668 (34%), Positives = 365/668 (54%), Gaps = 20/668 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +++ +   +GVG K    L+K      +     +DLL Y P  + +      I+ I+ + 
Sbjct: 3   IYSDIKNLKGVGPKALQLLNK------SGIYNLLDLLLYFPREYENITSSEDITNINGKE 56

Query: 69  IVTITGYISQH--SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            + I   + +          +    I  +DG       +F +    +K  +F  ++ T+ 
Sbjct: 57  KLKIKCKVLRIFPDKRTKTGKTITTIAFSDGENTFYGKWFNQ--PYVKKKYFIDKEYTLI 114

Query: 127 GKIKKLKNRIIMVHP-HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           G++KK+     + +P  +     ++ +   I   Y L  GL+ + F K+I   L  +  +
Sbjct: 115 GEVKKVGKDYEISNPKDFKEKEDKEKSDKNIIPKYPLKAGLTNNFFIKLITSILEAM-FI 173

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E + + +++K    S+  A   IH P++            RL + EL    + +L++++
Sbjct: 174 RENLPEWIIEKYKLCSLDYAIRNIHYPKEENALRAAE---RRLKFQELFTYSLKILMLKE 230

Query: 246 QFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
             K     I   +  ++   +  ++PF  T +Q  A+++IL DM +   M R+LQGDVGS
Sbjct: 231 YVKSNKEGIAFKIAPELVD-LKNSLPFQLTDAQSKAVREILSDMKKPTPMNRLLQGDVGS 289

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VALIA+  A +   Q V+MAP  ILA QHY    +      I +E++TG+  +  +
Sbjct: 290 GKTIVALIALFNAAKNQYQGVLMAPTEILANQHYHEFIRIMAPFNIKIELLTGSTTKKQK 349

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
            +  E I  G+  I+IGTHAL +D +Q+  L +++ DEQHRFGV QR KL  K     VL
Sbjct: 350 ERIKEEIKGGKIDILIGTHALIEDDVQFENLGIIVTDEQHRFGVMQRNKLFNKGKNIDVL 409

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL L   GD+++S I + P GR+ I+T      + D + E  K  + EG++
Sbjct: 410 VMTATPIPRTLALYLYGDLEVSIIDQLPPGREKIETKHGTKKQRDNIYEFSKKSIKEGRQ 469

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP +E+ +  + +SV   F  L E +    ++  IHG+MS  DK+ VM+ FKN   
Sbjct: 470 VYVVCPLVEDNEVLDLKSVEALFIELKESYFKDYNVGFIHGKMSPKDKDKVMNEFKNKET 529

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+ATTVIEVGI+V +A+I+IIENAE FGLAQLHQLRGRVGRG+  S C L+     SK
Sbjct: 530 QILVATTVIEVGINVPNANIMIIENAERFGLAQLHQLRGRVGRGQYKSYCFLIADTK-SK 588

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  R+ +++ + DGF IAEEDLK R  GE+ G++QSG    L++      ++L+ A K+
Sbjct: 589 VTEKRMKIMEQSNDGFFIAEEDLKIRGTGEVFGLRQSGENGLLLSDVIEDINILKCANKE 648

Query: 663 AKHILTQD 670
           AK ++  +
Sbjct: 649 AKELVASE 656


>gi|332638230|ref|ZP_08417093.1| ATP-dependent DNA helicase RecG [Weissella cibaria KACC 11862]
          Length = 678

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 224/667 (33%), Positives = 368/667 (55%), Gaps = 34/667 (5%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
            K    L+K+            DLL Y+P  + D   +   +E  +   VT  G I+   
Sbjct: 16  PKRVQALNKL------GIYTIDDLLGYYPMRYNDLAMKTP-AETQDGEKVTFKGVITSPP 68

Query: 81  ---SFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
               F  +K R  +++ +   T  I + FF +    +      G+++ V G   K +  +
Sbjct: 69  VVNRFGYKKTRTSFRLTVEHDT--IMVSFFNQ--PWVGKNLELGQEVAVHGTYDKTRQGM 124

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL--PEWIEKDLL 194
             +       + +      +EAVY     +     K +I++AL +   L   + +   L 
Sbjct: 125 SGIKLMSRNGDDE------MEAVYPSSKEIKAKTIKDLIIQALGKYGELLRTDIVPAYLR 178

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            +    +  +    +H P    D +  + AR   +++E    Q+ L +++   +   G  
Sbjct: 179 TRYKLMNHHDTVFGMHAPT---DGQVATEARRSASFEEFFVFQMRLQVIKSMDRDNRGRS 235

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           IN      +  +  +PF  T +Q+  + +I++DM +   M R+LQGDVGSGKT+VA +AM
Sbjct: 236 INFNNDELKAFIATLPFELTDAQKRVVNEIVRDMRRPIHMNRLLQGDVGSGKTVVAALAM 295

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
            AA+ AG QA +MAP  ILAQQH + I  +    ++ VE++TG+   A RR+ LE +A+G
Sbjct: 296 YAAITAGMQATLMAPTEILAQQHAKTIGNFFDPDKVRVELLTGSTKTAARRQILEDVANG 355

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           +  I+IGTHAL Q  I +  L L ++DEQHRFGVQQR  L +    P +L MTATPIPRT
Sbjct: 356 EVDILIGTHALIQPDIAFRNLGLAVIDEQHRFGVQQRATLREIGMNPDILAMTATPIPRT 415

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T+ G++D+S I + PAGRK IKT  +  N +++ I  ++  L EG +AY + P IEE
Sbjct: 416 LAITAYGEMDVSIIDQLPAGRKQIKTYWLRSNEMEKTIAFIRSQLQEGAQAYVVTPLIEE 475

Query: 495 KKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            +  + ++    +  L E+F  T  + ++HGR+S+ +KE VM +FK    ++L++TTVIE
Sbjct: 476 SETLDVQNAEAVYAELSEYFAPTYRVGLLHGRLSNQEKEDVMAAFKANEFQVLVSTTVIE 535

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV ++++++I +A+ FGL+QLHQLRGRVGRG   S   L+  P  ++    R+  + 
Sbjct: 536 VGVDVPNSTVMLILDADRFGLSQLHQLRGRVGRGSRQSYTFLISDPK-TQYGIDRMEAMV 594

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL----- 667
            T DGF++A++DL+ R  G+ILG +QSG+P+F +  P    +++ +A+++A  I+     
Sbjct: 595 ATTDGFVLAQKDLELRGAGDILGNRQSGVPEFRVGDPIADLAMMTVAQEEAIEIVSKPDW 654

Query: 668 TQDPDLT 674
            +DP+L 
Sbjct: 655 DKDPELA 661


>gi|56476706|ref|YP_158295.1| ATP-dependent DNA helicase RecG [Aromatoleum aromaticum EbN1]
 gi|56312749|emb|CAI07394.1| RecG-like helicases [Aromatoleum aromaticum EbN1]
          Length = 652

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 228/638 (35%), Positives = 346/638 (54%), Gaps = 11/638 (1%)

Query: 46  FYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLF 105
            + P  + D      I+       V I G +   S   L+ RR     + D +G +   +
Sbjct: 2   LHLPLRYEDETRVTPIAAARGGTAVQIEGEVVS-SEIMLRPRRQLVARIRDASGMLVARW 60

Query: 106 FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG 165
                   K     GR++ + G+++       MVHP     +  +     +  +Y    G
Sbjct: 61  LNFYPSQQKQ-LAAGRRVRLFGEVRGGFFGDEMVHPRVHAVDDGEPLPQALTPIYPTTAG 119

Query: 166 LSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWT 221
           L+    +K++  AL  +P L E++ + +L +   P+ A+A + +H+P    D     +  
Sbjct: 120 LAQSALRKLVARALYAVP-LDEYLPEPVLAELRLPNFADAVHTLHHPPPDVDAAALEDRA 178

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            PA  R+ ++ELL  Q++L       +      +   G++   +L  +PF  T +Q  A+
Sbjct: 179 HPAWRRIKFEELLVQQLSLRRAYNARRTHRAPALPATGRLCDALLTQLPFRLTGAQARAV 238

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
             I  D++  + M R+LQGDVGSGKT+VA +AM  A E G QAV+MAP  ILA+QH+  +
Sbjct: 239 AAIAHDLAMPHPMQRLLQGDVGSGKTIVAALAMLQAAENGFQAVLMAPTEILAEQHWRKL 298

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
             + +   + +  ++G+  +  R   L R+A G+  + +GTHAL +D +   +L L IVD
Sbjct: 299 GAWLEPLGVDIAWLSGSRKRRERDAELARLASGEVLLAVGTHALIEDPVLLPRLGLAIVD 358

Query: 402 EQHRFGVQQRLKLT---QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           EQHRFGV+QRL L         PH+L+M+ATPIPRTL ++   D+D++ + E P GR PI
Sbjct: 359 EQHRFGVRQRLALRDKGADGQHPHMLMMSATPIPRTLAMSYYADLDVTVLDELPPGRTPI 418

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            T ++   R D+V+ R++     G +AYW+CP IEE +    ++ +E F +L        
Sbjct: 419 LTKLVSDGRRDQVVARVRDACLAGCQAYWVCPLIEESEALQLKTALETFETLTAALPELR 478

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I ++HGR+   +K + M +F  G   LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLH
Sbjct: 479 IGLVHGRLKGEEKSATMAAFATGELHLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLH 538

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG   S CILL+  PLS+N   RL V+    DGF IA EDL  R  GE +G +
Sbjct: 539 QLRGRVGRGTADSVCILLFTQPLSENGRARLKVIYEHSDGFAIAREDLHIRGPGEFVGAR 598

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           QSG P    A  E    LLE AR  A+ +L + P   +
Sbjct: 599 QSGTPLLRYADLERDVDLLEPARTLAERLLDEAPQTAA 636


>gi|229918594|ref|YP_002887240.1| ATP-dependent DNA helicase RecG [Exiguobacterium sp. AT1b]
 gi|229470023|gb|ACQ71795.1| ATP-dependent DNA helicase RecG [Exiguobacterium sp. AT1b]
          Length = 676

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/678 (33%), Positives = 350/678 (51%), Gaps = 25/678 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+T +GVG + +  L            R  D+L + P  + +      ++      +V  
Sbjct: 7   LTTLKGVGPEMAKKLE------VMGLVRIEDVLEHVPFRYENY-NSGTVTTAVHGDLVKW 59

Query: 73  TGYISQHSSFQL----QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           +G +      +     + R  +++LL D    + +  F R     K     G  +TV GK
Sbjct: 60  SGTVQAEPLVRYYSKGKNRLQFRLLLED-RYAVQVTMFNR--AFYKEKLVIGETVTVKGK 116

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
               +  I      +            ++ +YSL  GL+   F +I+  A  ++  LPE 
Sbjct: 117 WDMNRMTISATDLEF------GAPSGGLQPIYSLRAGLTQKNFSRIVKLAFEQVNDLPEQ 170

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           + + +  +            +H P      E    AR    Y+E L  Q+ L   RK  +
Sbjct: 171 VPQAIRDRYRLVDRMTMLRGMHFPDT---VETYKQARRSYVYEECLMYQLKLQAFRKMER 227

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
              G  ++++     + ++ + F  T +Q   I++I+ D+ +  RM R+LQGDVGSGKT+
Sbjct: 228 SGNGRALHLDKHQLNEFVKRLAFPLTGAQTRVIREIVSDLERPERMNRLLQGDVGSGKTV 287

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ A V AG Q  +M P  ILA+QH   +++  +   I + ++T ++    R   L
Sbjct: 288 VAAIALYATVTAGYQGALMVPTEILAEQHATSLQELFEPFGITIALLTSSVKGKAREALL 347

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             I  G   II+GTHAL Q  +++  L L I DEQHRFGV+QR KL  KA    VL MTA
Sbjct: 348 TAIRSGDVDIIVGTHALIQGPVEFSNLHLAITDEQHRFGVEQRKKLRDKAEFADVLYMTA 407

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +++ G++D+S I E P GRKPI+T     ++ID V   +   L+ G++AY I
Sbjct: 408 TPIPRTLAISAFGEMDVSTIDEMPKGRKPIETYWAKHDQIDRVHTMVDRELALGRQAYVI 467

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            P IEE       S    +  L E F    + ++HG++S  +K+ VM SF +   ++L++
Sbjct: 468 APLIEESDTLEVESATALYELLKERFSNYGVGLMHGKLSSTEKDEVMKSFADNATQILVS 527

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTV+EVG++V +AS+III +AE FGLAQLHQLRGRVGRG   S CIL+  P  S     R
Sbjct: 528 TTVVEVGVNVPNASLIIIHDAERFGLAQLHQLRGRVGRGAHQSFCILVGDPK-SDVGKVR 586

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L  +  T DGF++AE+DL+ R  G+  G  QSG+P F +A P L   ++E+A +DA  +L
Sbjct: 587 LKTMTETNDGFVLAEKDLELRGAGDFFGTAQSGLPSFRVADPVLDLKVMEVAMQDAVKLL 646

Query: 668 TQDPDLTSVRGQSIRILL 685
             D      + + +R  L
Sbjct: 647 GSDAFWHDAQYEGLRGYL 664


>gi|310779483|ref|YP_003967816.1| ATP-dependent DNA helicase RecG [Ilyobacter polytropus DSM 2926]
 gi|309748806|gb|ADO83468.1| ATP-dependent DNA helicase RecG [Ilyobacter polytropus DSM 2926]
          Length = 684

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 232/682 (34%), Positives = 367/682 (53%), Gaps = 23/682 (3%)

Query: 10  FAPLS--TFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           F PL     +G+  K    L  +            DL +Y P ++ DR     I+++ E 
Sbjct: 8   FEPLGNFELKGITDKSIEKLKNL------GIVTLYDLFYYFPRNYEDRTNFKSINQLKEG 61

Query: 68  RIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
               I G +    + + + R+   K  ++DGTG + L++F  +   LK     G +    
Sbjct: 62  EYAVIKGKLFGIETLRTRTRKTMIKAKVSDGTGFVELVWF--QMPYLKKSLKMGDEYIFI 119

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVL 185
           G +K+  N   M +P Y  +         I  +YS     +    +KI+  AL     + 
Sbjct: 120 GNVKRGYN-YQMTNPEYRKYAESKGVSKEILPIYSSNKDFNQRSLRKIVKTALDSYTELF 178

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E I +++L+K S     +A   IH P+  +D E     + R A +ELL  +  +L  R 
Sbjct: 179 QENIPEEILKKYSIADRKKALKDIHFPKNTRDIEEA---KRRFAIEELLILETGILEKRF 235

Query: 246 QFKKEI--GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
                      +     + +K L N+ +S TK+Q+  + +I ++++    + R+LQGDVG
Sbjct: 236 AIDSMNNEMYVLEDNKNLVKKFLGNLGYSLTKAQKRVVTEIYKELNNGKIINRLLQGDVG 295

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+I +   +E   Q V MAP  ILA QHY  I        I VE++TG++    
Sbjct: 296 SGKTIVAVIMLLYMIENSYQGVFMAPTEILATQHYLSIADTLLELGIRVELLTGSVKGRK 355

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +   LE I +G+  +I+GTH+L +D+++++KL L+++DEQHRFGV QR KL +K    ++
Sbjct: 356 KDAILEDIKNGKIDLIVGTHSLIEDNVEFHKLGLIVIDEQHRFGVIQRKKLREKGVIANL 415

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEVIERLKVVLSEG 482
           ++M+ATPIPR+L L+  GD+D+S I E P GR P+KT  I   +  ++    ++  L+EG
Sbjct: 416 IVMSATPIPRSLALSIYGDLDVSIIDEMPPGRTPVKTKWINSSSDAEKAYSFIQKKLTEG 475

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++AY++ P IEE ++ +F+SV E F  +   F      ++HGRM + +K+ +M  FKN  
Sbjct: 476 RQAYFVAPLIEESEKLSFKSVQELFKEVTRRFPQCRAGLLHGRMKNSEKDEIMHFFKNHK 535

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ATTVIEVGI+V +ASI++I N E FGL+ LHQLRGRVGRG   S C L +    +
Sbjct: 536 LDILVATTVIEVGINVPNASIMVINNTERFGLSALHQLRGRVGRGIHPSYCFL-FSETDN 594

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
             S +RL ++++T DGF IAEEDL+ RK GEI GI+QSG               +++ R 
Sbjct: 595 DVSKSRLMIMESTTDGFKIAEEDLRLRKPGEIFGIRQSGFSDLKFIDIIHDVKTIKMVRD 654

Query: 662 DAKHILTQDPDLTSVRGQSIRI 683
            A   L ++     ++   +RI
Sbjct: 655 IAYEYLRKNSG--KIKNTHLRI 674


>gi|83747287|ref|ZP_00944329.1| ATP-dependent DNA helicase recG [Ralstonia solanacearum UW551]
 gi|83726111|gb|EAP73247.1| ATP-dependent DNA helicase recG [Ralstonia solanacearum UW551]
          Length = 730

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 246/701 (35%), Positives = 370/701 (52%), Gaps = 44/701 (6%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI----SEERIVTITGYISQHSS 81
            L+K+           +DL+ + P  + D      I+E     +      + G +++ + 
Sbjct: 47  KLAKL------GLRHDVDLVLHLPMRYEDETTLLTIAEAIARANTGWAAQVEGAVTR-NE 99

Query: 82  FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
             L+ RR   + + D +GE+ L F       +K +  EG ++ V G+++       MVHP
Sbjct: 100 VALRPRRQLVVHIADDSGELVLRFLNFYGSQVKQM-AEGVRLRVRGEVRGGFFGAEMVHP 158

Query: 142 HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQKK 197
                   +     +  VY    G++    +K I+ AL R P LPE +   L    L   
Sbjct: 159 TVRAVAPDEPLPDRLTPVYPSTAGVAQAYLRKAILNALGRTP-LPETLPDSLMRGPLAPL 217

Query: 198 SFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
              + AEA  ++H P    D     E T PA  R+ +DELLA Q++L   +   +     
Sbjct: 218 KLMAPAEAVRLLHQPTPDVDEHSLVERTHPAWLRIKFDELLAQQLSLKRAQAARRTRSAP 277

Query: 254 PINVEGKI--AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   G      + +  +PF  T +Q    ++I  D+++   M R+LQGDVGSGKT++A 
Sbjct: 278 VLRAGGAQGLLARFMAALPFKLTGAQGRVWEEIRADLARPYPMQRLLQGDVGSGKTVIAA 337

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +A   A++AG QA +MAP  +LA+QHY  +  + +   + +  + G++ +  + +A  R+
Sbjct: 338 LAACQAIDAGWQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAARV 397

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA------------T 419
           A G A ++IGTHAL QD++ + +L L +VDEQHRFGV QRL L  KA             
Sbjct: 398 AAGAAQLVIGTHALIQDTVTFARLGLAVVDEQHRFGVAQRLALRGKAGGADAPVAETAQP 457

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PH L+M+ATPIPRTL +T   D+D+S I E P GR P+ T ++   R DEVIER+    
Sbjct: 458 VPHQLMMSATPIPRTLAMTYYADLDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAA 517

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            EG++ YW+CP IEE +    ++ VE F +L +      + ++HGR+   DK +VM +F 
Sbjct: 518 REGRQVYWVCPLIEESEALQLQTAVETFETLSQSLAGLKVGLVHGRLPSADKAAVMSAFA 577

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S CILLY  
Sbjct: 578 GGELHVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQA 637

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           PLS  +  RL  ++ T DGF IA  DL  R  GE LG +QSG      A       ++E 
Sbjct: 638 PLSPTAKQRLQTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLNHDAWMVEF 697

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           A+  A+ +L + P+  +V     R L       E   ++R 
Sbjct: 698 AQGAAEQMLARFPE--AVEAHLKRWL------GEREHYLRV 730


>gi|307610762|emb|CBX00373.1| ATP-dependent DNA helicase RecG [Legionella pneumophila 130b]
          Length = 660

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 238/639 (37%), Positives = 366/639 (57%), Gaps = 18/639 (2%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITL 103
           +LF+ P  + DR     I ++       I G++ + +  +  KR      + D TG + L
Sbjct: 1   MLFHLPYKYQDRTRITPIQDLRSNEWCVIAGHVCK-TEIKYGKRMMLNCYVEDKTGVVKL 59

Query: 104 LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV--NFPLIEAVYS 161
            FF+   + +         I   G+++   N++ M+HP Y   + +        +  +Y 
Sbjct: 60  RFFHFNKQQI-QALNNSAMIRAFGEVRGFNNQLEMIHPEYQLIDQESDFHVEETLTPIYP 118

Query: 162 LPTGLSVDLFKKIIVEALSR----LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
              GL+    ++++  AL +    L  L EW+ +  LQ+ +F  + EA  ++HNP     
Sbjct: 119 STQGLTQTRLRQLVKIALEQSEHELHQL-EWMSEKQLQENNFYDLGEAIKLLHNPPPDIS 177

Query: 218 FE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                    PA +RL +DELLA Q+++   R+   K     I  +  I ++ + ++PFS 
Sbjct: 178 LSNLEAGEHPALKRLIFDELLAQQLSMQFARQSRSKLQAPAIFFDNAIHKRFIESLPFSL 237

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q+   K+I  D++Q   MLR+LQGDVG+GKT++A +A   A+  G Q   MAP  +L
Sbjct: 238 TNAQQRVFKEISVDLTQSKPMLRLLQGDVGAGKTIIAALAALQAISQGFQVAFMAPTDLL 297

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           ++QH   + K+ +   I V  ++G M    R+  L  +      +I+GTHALFQ+ +++ 
Sbjct: 298 SEQHTNSLGKWLEPIGINVLRLSGKMKTTERKNTLAALQDNSCQLIVGTHALFQEQVEFA 357

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +L LVI+DEQHRFGV+QRL L QK       PH LLMTATPIPRTL ++    +DIS I 
Sbjct: 358 RLGLVIIDEQHRFGVEQRLLLQQKGQLNQLIPHQLLMTATPIPRTLSMSHFAHLDISVID 417

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           E P GR PI T ++  ++ + +IERL+  ++ GK+AYW+C  IEE ++    +  +    
Sbjct: 418 ELPPGRMPITTAVLNQDKRELIIERLQAAIANGKQAYWVCTLIEESEKLQCMAATDTSKK 477

Query: 510 LHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L E    + + ++HGRM  ++KE+ M +FK G   LL+ATTVIEVG+DV +AS++IIENA
Sbjct: 478 LQEQLSFARVGLVHGRMKALEKEATMAAFKQGEIDLLVATTVIEVGVDVPNASLMIIENA 537

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E  GL+QLHQLRGRVGRG   S C+LLY  PLS+    RL ++++T DGFLI+E+DL+ R
Sbjct: 538 ERLGLSQLHQLRGRVGRGNNQSHCLLLYQSPLSQQGTERLKIMRSTTDGFLISEKDLELR 597

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
             GEILG +Q+G  +F IA  +   +L  I R  AK ++
Sbjct: 598 GSGEILGTRQTGFRQFKIANLQRDKTLFAILRPIAKQLV 636


>gi|331085071|ref|ZP_08334158.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408771|gb|EGG88236.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 685

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 221/679 (32%), Positives = 363/679 (53%), Gaps = 19/679 (2%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
            + +   +G+G+K      K+            DL+ Y P  +        I EI E+++
Sbjct: 4   QSGVGELKGIGEKTEKLFQKL------GVFTVGDLIRYFPRGYDVYDPPVSIGEIQEQKV 57

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
             + G I        +  +     L D TG I ++++  +   L+N    G+ + + G++
Sbjct: 58  QAVRGMIYGTLQVSSRGAQVTSGYLKDMTGTIKVVWY--RMPFLRNTLQNGQIVILRGRV 115

Query: 130 KKLKNRIIMVHPHYIFH-NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
              K   +M HP      +S +     ++ +Y L  GL+ +   K + +AL  L +  E 
Sbjct: 116 VTKKGVRVMEHPEIFSPADSYEKKLDTLQPIYPLTAGLTNNAVMKAVRQALEYLELQKEI 175

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQF 247
           +   +  K        +   IH P++ ++F     ARERL ++E L   ++L  M+ K+ 
Sbjct: 176 LPATVRMKYHLAEYNFSVRGIHFPKEKQEF---YQARERLVFEEFLVFILSLRQMKEKKE 232

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +     PI+   +  +  L+ +P+  T +Q+   + + +DM+  + M R++QGDVGSGKT
Sbjct: 233 RSRNQFPIHP-SEEIEAFLKKLPYELTNAQKKVWEQLQKDMAGTHTMARLIQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRR 365
           ++A+++  +    G Q  +MAP  +LA+QH++ I +  +  +I   VE++TG+M    +R
Sbjct: 292 IIAVLSFMSVAFCGWQGAMMAPTEVLARQHFDSITEMFEQYEIPLKVELLTGSMTAKEKR 351

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
            A  RI  GQA II+GTHAL Q+ + Y  L LV+ DEQHRFGV+QR +   K   PH+L+
Sbjct: 352 LAYGRIESGQAQIIVGTHALIQEKVTYANLALVVTDEQHRFGVKQREQFAGKGELPHILV 411

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPRTL +   GD+D+S I E PA R PIK  ++  +      + ++  ++EG++ 
Sbjct: 412 MSATPIPRTLAIILYGDLDVSVIDELPANRLPIKNCVVDTSYRKTAYQFIRRQVAEGRQC 471

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP +EE +     +V++    L       I +  +HG+M    K+ +M+ F     +
Sbjct: 472 YVICPMVEESEHMEAENVIDYAEKLQGELGEDIIVDFLHGKMKQSQKDEIMERFGKNESQ 531

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVGI+V +A++++IENAE FGLAQLHQLRGRVGRG   S CI +      K 
Sbjct: 532 VLVSTTVIEVGINVPNATVMMIENAERFGLAQLHQLRGRVGRGNYQSYCIFMSGSK-GKE 590

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL +L  + DGF IA EDLK R  G++ GI+QSG+  F +        +L+ A + A
Sbjct: 591 TKERLEILNRSNDGFYIANEDLKLRGPGDLFGIRQSGLMDFRLGDVFQDAKILQRANEAA 650

Query: 664 KHILTQDPDLTSVRGQSIR 682
             IL     L     ++++
Sbjct: 651 DWILKNGKGLEEEACRNLK 669


>gi|300214416|gb|ADJ78832.1| ATP-dependent DNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 678

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/671 (34%), Positives = 376/671 (56%), Gaps = 30/671 (4%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            L  L   +   RGVG K    L+K+            DLL ++P  + D      + EI
Sbjct: 1   MLVNLGDSVGVLRGVGPKKIQALNKL------GVNTIEDLLTFYPFRYNDI-AVKNLEEI 53

Query: 65  SEERIVTITGYISQHSS-FQLQKRR---PYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           + +  VT+ G ++      +  +++    +K+L+N     I + FF +    +      G
Sbjct: 54  NSQEKVTLKGIVASEPVLVRFGRKKSRLNFKLLINHD--VIGVTFFNQ--PWISKQVTTG 109

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           +++ V GK   L+  +  +    I   + D        VY     +   + K+++ +A  
Sbjct: 110 QELAVYGKYDALRQSLSGIK--IISRKTND-----FVGVYRSSKDIKESVVKQLVKQAYE 162

Query: 181 RLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
                + + + + +  K    +  +  + +H P   K+ +     R    +DE  + +  
Sbjct: 163 EYNSYIRDVVPESIRIKYHLENRKQMIHDMHFPSTKKEADSA---RRSAIFDEFFSFEAG 219

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+++   K +G+ I    +  ++ ++ +PF  TK+Q+  + +I  DM   N M R+LQ
Sbjct: 220 LQLLKRDNHKNMGLRIKYNNEKLKEFIKGLPFELTKAQKRVVNEICADMLSPNHMNRLLQ 279

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN- 358
           GDVGSGKT++A IAM A V AG QAV+MAP  ILAQQH E +    +   I V ++T + 
Sbjct: 280 GDVGSGKTIIAAIAMYATVTAGFQAVLMAPTEILAQQHAEKLANLFEQYGISVALMTSSS 339

Query: 359 -MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 +R+ L+ + +G   I+IGTHA+ QD+I+++ L L I DEQHRFGV QR  L +K
Sbjct: 340 LSRVKVKRELLKHLKNGDIDIVIGTHAVIQDNIEFHNLGLAITDEQHRFGVNQRRILRKK 399

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P +L MTATPIPRTL +T+ G++D+S I E P GR+P+KT  +   ++  V E +K 
Sbjct: 400 GVNPEILAMTATPIPRTLAITTYGEMDVSIIDELPKGRQPVKTSWVKKKQVKNVFEFVKR 459

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDS 536
            L  G +AY I P +EE +  + ++  E F    E+F +  +A++HG+M   +KE  M +
Sbjct: 460 QLELGTQAYIISPLVEESELLDLQNAEEVFEKAKEYFGSEKVALLHGKMDANEKEQAMQA 519

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    +L++TTVIEVG+DV +A+++II +A+ FGLAQLHQLRGRVGRG + S CIL+ 
Sbjct: 520 FKNKEVSILVSTTVIEVGVDVPNATVMIILDADRFGLAQLHQLRGRVGRGSKESYCILVA 579

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            P  S+    R+ ++  T DGFLI+++DL+ R  GE+LG KQSG+P+F +  P ++ ++L
Sbjct: 580 DPK-SEYGKERMKIMTGTNDGFLISQKDLELRGPGEVLGKKQSGLPEFKVGDPVVNLNIL 638

Query: 657 EIARKDAKHIL 667
           ++A+++A +++
Sbjct: 639 QVAQEEAHNVV 649


>gi|313679752|ref|YP_004057491.1| ATP-dependent DNA helicase recg [Oceanithermus profundus DSM 14977]
 gi|313152467|gb|ADR36318.1| ATP-dependent DNA helicase RecG [Oceanithermus profundus DSM 14977]
          Length = 776

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/697 (32%), Positives = 362/697 (51%), Gaps = 23/697 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L AP+     +G      +  +            DLLFY+P    DR   P  + ++  
Sbjct: 95  ELDAPVDAIP-LGPGGPQKMRSL------GVRTLRDLLFYYPRRHEDRRTLPGFAALAPG 147

Query: 68  RIVTITGYISQHSSFQLQKRRPY--KILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKIT 124
              T+   +   S  +  +++    +  L D  G ++T ++F +    +     EG KI 
Sbjct: 148 AKATVVATVLSKSQVKTPRKKMLITQARLADDRGHKLTAVWFNQ--PWVMGQLREGEKIV 205

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           VTG+         +   ++     + ++   I  VYSL   +S    ++ +  AL  +  
Sbjct: 206 VTGRYTVRGRVRNLAVEYFEAEGGEQLSTGRIVPVYSLGERMSQAWLRRSVWRALEAIKE 265

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           +P+ + ++L Q+     +  A   IH P   +     + A ERL +DE L  ++ +LL  
Sbjct: 266 VPDPLPEELRQELGLADLDFALRQIHFPESEQHL---ARALERLKFDEFLFLELRVLLT- 321

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
                 +G    V  +     L  +PF PT +Q   + +IL DM  + +M R+LQGDVGS
Sbjct: 322 SGASALVGQIFEVREEDLCTFLDALPFEPTAAQRRVLDEILADMRSERQMARLLQGDVGS 381

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT VA  A+  A     Q  +MAP  ILA+QH+  + +Y     + VE++TG+M    +
Sbjct: 382 GKTAVAAAALYVAARNQKQGALMAPTEILAKQHFANLTRYLWPLGVRVELLTGSMKAGEK 441

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           ++   RI  G+  +++GTHAL Q  +++ +L L ++DE+HRFGV QR  L Q    P VL
Sbjct: 442 KRVYARIESGEVDVVVGTHALIQKEVRFRELGLAVIDEEHRFGVMQRRALLQGR--PDVL 499

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPR+L LT  GD+++S I E P GRKP+KT ++      +     + ++ EG +
Sbjct: 500 VMTATPIPRSLALTLYGDLEVSVIDEMPPGRKPVKTRLLTQRSRKDAYAFARKLIGEGHQ 559

Query: 485 AYWICPQIEEKKESNF---RSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNG 540
            + + P IEE         R+  E    +      + + ++HGRM   +K+++M+ F+N 
Sbjct: 560 VFVVAPLIEESDAEVMAEVRAATELAGEVAAMLPEARVEVLHGRMKAEEKDALMERFRNR 619

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG+D+  A+++IIENAE FGLAQLHQLRGRVGRG E + CIL+     
Sbjct: 620 DFDVLVSTTVIEVGVDIPGANLMIIENAERFGLAQLHQLRGRVGRGGEQAYCILIAGDT- 678

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+ +  RL V++ + DGF +AE+DLK R  GE+ G +QSG+P   +        ++E AR
Sbjct: 679 SRKTMQRLRVIEKSTDGFYVAEQDLKLRGPGELRGTRQSGLPDLQLGDLTSDVEIIESAR 738

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
             AK IL  DP LT    Q+++  L L       + I
Sbjct: 739 STAKRILEADPYLTEPEHQALKRELQLRGEAVGLREI 775


>gi|159896821|ref|YP_001543068.1| ATP-dependent DNA helicase RecG [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159889860|gb|ABX02940.1| ATP-dependent DNA helicase RecG [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 832

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 240/729 (32%), Positives = 375/729 (51%), Gaps = 60/729 (8%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           P+   L T +G+G   +   +K+            DLL++ P  + D   R +I ++   
Sbjct: 107 PIDTLLKTLQGIGPSTARSFAKL------GVHTLEDLLYHVPHRYDDFSKRKQICDLVVG 160

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
              T+   +    SF  + R+  +I + D TG +   +F  +   +   F EG +I ++G
Sbjct: 161 ETDTVIVTVDAIKSFNAKGRQGVEITVGDDTGVLKASWF--RGTWMAKQFREGMRIVLSG 218

Query: 128 KIKKLKNRIIMVHPHYI-FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVL 185
           K+   +    M +P +  F     V+   +  V+ L  GL     +++I   +  + P L
Sbjct: 219 KVSMFREMKSMSNPQWEPFVEDDLVHTGRLVPVHPLTKGLQDRNARQVIKRVVDAVTPTL 278

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            + +  +L ++     +  A + IH P      +     R+RL +DE L  Q+ +L  ++
Sbjct: 279 SDPLPIELRERAGLLPLGVAISQIHFPDSWAMVQRA---RQRLGFDEFLYIQLGVLQRKR 335

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            ++   G PI     I    L ++PF+ T +Q     +I +D+ +   M R++QGDVGSG
Sbjct: 336 LYQGVQGQPIAFNQAIHDAYLSSLPFALTNAQTRTFNEICRDLERPVPMTRLVQGDVGSG 395

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT-------------------- 345
           KT VA  A+  AV AG Q  +MAP  ILA+QHY  +KK                      
Sbjct: 396 KTAVAAAALVQAVAAGFQGAMMAPTEILAEQHYRGLKKLLANVKIPGRETNSNGDWRDEL 455

Query: 346 -----------------------QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
                                  +   I V ++TG++    RR+AL+ IA G+  IIIGT
Sbjct: 456 DQEKRNRLAQIKQLLMLADEPEPEPGGIRVALLTGSLKARQRREALKLIADGEVDIIIGT 515

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           HAL Q ++ Y  L L +VDEQHRFGV+QR  L +K   PH+L+MTATPIPR+L LT  GD
Sbjct: 516 HALIQANVDYQALGLAVVDEQHRFGVEQREALKRKGFNPHLLVMTATPIPRSLALTIYGD 575

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFR 501
           +D+S I E+P GR+PI+T  I      +  + ++  ++ G++A+ ICP +EE ++  + +
Sbjct: 576 LDVSVIDERPPGRQPIRTKWISSGERSKAYKHMRKEIAAGRQAFVICPLVEESEKLEDVK 635

Query: 502 SVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           S +     L         + +IHGRM+  +K+++M  F++    +L+AT V+EVGID+ +
Sbjct: 636 SAIVEQEHLQHEIFPDLKVGLIHGRMTSSEKDTIMAQFRDREFDILVATAVVEVGIDIPN 695

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A+ I+IE AE FGLAQLHQ RGRVGRG   S C+L+     +  +  RLS ++ +EDGF 
Sbjct: 696 ATTIMIEGAERFGLAQLHQFRGRVGRGSHQSFCVLVSDKEDNDVTVARLSSMEESEDGFR 755

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
           +AE DL+ R  GE  GI+QSG P   +AQ      LL  AR +A+ IL  DP+L      
Sbjct: 756 LAEIDLELRGPGEFFGIRQSGTPDLKVAQLT-DTRLLHAARIEAERILKLDPELELPEHA 814

Query: 680 SIRILLYLY 688
            +R  L  +
Sbjct: 815 KVREKLQAF 823


>gi|291543374|emb|CBL16483.1| ATP-dependent DNA helicase RecG [Ruminococcus sp. 18P13]
          Length = 680

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 231/682 (33%), Positives = 359/682 (52%), Gaps = 23/682 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +N LF P+S  RGVG+K +   +++            DLLF+ P S++D      +    
Sbjct: 1   MNELFRPISALRGVGEKRAKAYARL------GIQTPYDLLFHIPRSYLDFRNPEPVLSAP 54

Query: 66  EERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            +    + G I++    Q  ++    +K    DG  + T++F+        +    G   
Sbjct: 55  LDTPCVVEGCITRKLPEQRIRKGLSVFKATATDGESDFTVVFYNNFYAF--DALKVGETY 112

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
              GK+     R  +  P Y+  +       L++ VY L  GL+  + +  + +AL  L 
Sbjct: 113 RFAGKLTGTLLRREIHSPQYLRADCPV----LMKPVYPLTNGLTNPMVQANMRQALELLR 168

Query: 184 VLP-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             P + +   + ++    ++ EA  ++H P      +     + RLA+D LL  Q+ +L+
Sbjct: 169 REPFDGLPSGIRRQYDLCTLPEALGVVHQPASEPILQEA---KRRLAFDALLQLQLGMLM 225

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R + + +    ++ +         ++PF+PT +Q+ +I +I  D+ +     R+LQGDV
Sbjct: 226 LRNRSRAQTAYTMDPDTD-LTPFYASLPFAPTNAQKRSIAEICGDLCRTVPANRLLQGDV 284

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT VA  A     + G Q+ +MAP  ILA QHY  ++ +     I V ++TG++P  
Sbjct: 285 GSGKTAVAAAACYFTCKNGFQSALMAPTEILATQHYHTLEGFLSPLGIRVGLLTGSLPAK 344

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R+    +  G+  +++GTHAL Q    +  L LVI DEQHRFGV QR  L QK   PH
Sbjct: 345 EKRRIRTALQAGELDVLVGTHALIQKDTVFPALGLVITDEQHRFGVGQRAALAQKGGTPH 404

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+M+ATPIPRTL L   GD+DIS + E P GR PI+T  +           ++  +  G
Sbjct: 405 KLVMSATPIPRTLALIVYGDLDISVLDELPVGRLPIRTYAVTGKLRQRAYGFVRSRMDAG 464

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNG 540
           ++AY +CP IEE  ES+  +V      L     +   + ++HG+M   +KE VM SFK G
Sbjct: 465 EQAYIVCPMIEE-GESDLLAVTSYAEQLRAGAFAAYRVGLLHGKMKPAEKEQVMASFKAG 523

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              LL+ TTV+EVG+DV +A++++IEN+E FGL+QLHQLRGRVGRG + S CIL+     
Sbjct: 524 ELDLLVCTTVVEVGVDVPNATVMLIENSERFGLSQLHQLRGRVGRGSKQSHCILITDST- 582

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+ S  RL VL +T DGF IAEEDLK R  G+  G  Q G+P   +A+      L+   +
Sbjct: 583 SEESRERLRVLSSTTDGFRIAEEDLKLRGPGDFFGSAQHGLPPVHLAELAEDMELVRQTQ 642

Query: 661 KDAKHILTQDPDLTSVRGQSIR 682
           + A+ IL  DP L      ++R
Sbjct: 643 QAARDILEADPQLRDPVNHALR 664


>gi|94971548|ref|YP_593596.1| ATP-dependent DNA helicase RecG [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553598|gb|ABF43522.1| ATP-dependent DNA helicase RecG [Candidatus Koribacter versatilis
           Ellin345]
          Length = 753

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 238/724 (32%), Positives = 389/724 (53%), Gaps = 41/724 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +G+G + +  L+          +   DLL+Y P  + DR     I E+    
Sbjct: 39  LSTSVQYVKGIGPRTAETLA------TKGISTVEDLLYYLPFRYEDRLNPRGIGELRPGE 92

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           + ++   +     F+ +    +++ +  G   +  L+F+     LK+ F  G+ + + GK
Sbjct: 93  MASVVAEVRTSGLFRTRAGPMFQLTVGQGHQTLKCLWFHG--AYLKDRFKPGQLLAMYGK 150

Query: 129 I---KKLKNRIIMVHPHYIFHNSQDV-------------NFPLIEAVYSL--PTGLSVDL 170
           +   K  +  + ++ P +   +  D                  I  +Y       L+   
Sbjct: 151 VEESKFGRRELQIIQPQFEVLHDPDEPAEDADSGKLKTLEIGRIVPIYETAGNGKLTSKY 210

Query: 171 FKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE--- 226
           F+++I  AL  L   +P+ I               AF+  H P + + F     AR    
Sbjct: 211 FRRVIYGALENLTDEIPDPIPPVTRSHVDLLERRAAFSKAHWPDEGESFTRLQSARSAAH 270

Query: 227 -RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            RL ++EL   ++ L L R++ + + GIP  V+ ++ + I R +PF PT +Q+  + +I+
Sbjct: 271 IRLIFEELFFLELGLELKRRKMRAQAGIPFRVDDQVREAIKRILPFHPTAAQKRVLGEIV 330

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            DM Q + M R+LQGDVGSGKT+VA  A   A+E G Q  +MAP  ILA QHY   ++  
Sbjct: 331 ADMKQPSPMRRLLQGDVGSGKTIVAFEAAVIAIENGYQVALMAPTEILATQHYLSARRIL 390

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +     + ++TG++ Q  +R+    IA G A ++IGTHAL Q+ +++  L LVIVDEQHR
Sbjct: 391 EGAGYRIVLLTGSVEQDRKREIRRHIAQGNAQLVIGTHALIQEGVEFDALGLVIVDEQHR 450

Query: 406 FGVQQRLKLTQ--KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           FGV QR KL +   A  P VL+MTATPIPRTL LT  GD+D+S + E P GR PI T  +
Sbjct: 451 FGVMQRFKLMKKTDAAEPDVLVMTATPIPRTLALTLYGDLDVSILNELPPGRTPIVTRRV 510

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTS--S 517
              R DEV   ++  ++ G +AY + P IEE ++       ++ ++ ++ L ++  +   
Sbjct: 511 SDERADEVWAFVRKQIAAGHQAYIVYPVIEENEDAESGKQLKAAMKMYDELRKNVFADLR 570

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + ++HGRM   DK++VM  F+ G  ++L++TTVIEVG+DV +A+I+++E+AE FGL+Q+H
Sbjct: 571 VGLLHGRMDSDDKDAVMRRFQAGDVQVLVSTTVIEVGVDVPNANIMVVEHAERFGLSQMH 630

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGR+GRG   S C+L+    +S  +  RL  + +T DGF I+E DL+ R  GE  G K
Sbjct: 631 QLRGRIGRGSAKSFCVLMTGGKVSPEAEQRLDAMVSTNDGFQISELDLQLRGPGEFFGTK 690

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILT-QDPDLTSVRGQSIRILLYLYQYNEAFQF 696
           Q+GMP F +A       LLE+A+++A ++ +   PDL+    +++   L  + +N  +  
Sbjct: 691 QAGMPDFRVANLLRDRELLELAKREAAYVTSGPHPDLSEAEIKNVLTHLRTH-WNRRYGL 749

Query: 697 IRAG 700
           +  G
Sbjct: 750 VEVG 753


>gi|227890686|ref|ZP_04008491.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227867624|gb|EEJ75045.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 678

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 234/702 (33%), Positives = 389/702 (55%), Gaps = 32/702 (4%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            L  L   +   RGVG K    L+K+            DLL ++P  + D      + EI
Sbjct: 1   MLVNLGDSVGVLRGVGPKKIQALNKL------GVNTIEDLLTFYPFRYNDI-AVKNLEEI 53

Query: 65  SEERIVTITGYISQHSS-FQLQKRR---PYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           + +  VT+ G ++      +  +++    +K+L+N     I + FF +    +      G
Sbjct: 54  NSQEKVTLKGIVASEPILVRFGRKKSRLNFKLLINHD--VIGVTFFNQ--PWISKQVTTG 109

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           +++ V GK   L+  +  +    I   + D        VY     +   + K+++ +A  
Sbjct: 110 QELAVYGKYDALRQSLSGIK--IISRKTND-----FVGVYRSSEDIKESVVKQLVKQAYE 162

Query: 181 RLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
                + + + + +  K    +  +  + +H P   K+ +     R    +DE  + +  
Sbjct: 163 EYNSYIRDVVPESIRIKYHLENRKQMIHDMHFPSTKKEADLA---RRSAIFDEFFSFEAG 219

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+++   K +G+ I    +  ++ ++ +PF  TK+Q+  + +I  DM   N M R+LQ
Sbjct: 220 LQLLKRDNHKNMGLRIKYNNEKLKEFIKGLPFELTKAQKRVVNEICADMLSPNHMNRLLQ 279

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN- 358
           GDVGSGKT++A IAM A V AG QAV+MAP  ILAQQH E +    +   I V ++T + 
Sbjct: 280 GDVGSGKTIIAAIAMYATVTAGLQAVLMAPTEILAQQHAEKLANLFEQYGISVALMTSSS 339

Query: 359 -MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 +R+ L+ + +G   I+IGTHA+ QD+I+++ L L I DEQHRFGV QR  L +K
Sbjct: 340 LSRVKVKRELLKHLKNGDIDIVIGTHAVIQDNIEFHNLGLAITDEQHRFGVNQRRILRKK 399

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P +L MTATPIPRTL +T+ G++D+S I E P GR+P+KT  +   ++  V E +K 
Sbjct: 400 GVNPEILAMTATPIPRTLAITTYGEMDVSIIDELPKGRQPVKTSWVKKKQVKNVFEFVKR 459

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDS 536
            L  G +AY I P +EE +  + ++  E F    E+F +  +A++HG+M   +KE  M +
Sbjct: 460 QLELGTQAYIISPLVEESELLDLQNAEEVFEKAKEYFGSEKVALLHGKMDANEKEQAMQA 519

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    +L++TTVIEVG+DV +A+++II +A+ FGLAQLHQLRGRVGRG + S CIL+ 
Sbjct: 520 FKNKEVSILVSTTVIEVGVDVPNATVMIILDADRFGLAQLHQLRGRVGRGSKESYCILVA 579

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            P  S+    R+ ++  T DGFLI+++DL+ R  GE+LG KQSG+P+F +  P ++ ++L
Sbjct: 580 DPK-SEYGKERMKIMTETNDGFLISQKDLELRGPGEVLGKKQSGLPEFKVGDPVVNLNIL 638

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
           ++A+++A +++   P+  + R ++  ++ YL +     + I 
Sbjct: 639 QVAQEEAHNVVFS-PNFET-REENFELIKYLNRQFAQEEIID 678


>gi|221202259|ref|ZP_03575293.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD2M]
 gi|221209151|ref|ZP_03582144.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD2]
 gi|221170969|gb|EEE03423.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD2]
 gi|221177833|gb|EEE10246.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD2M]
          Length = 791

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 250/696 (35%), Positives = 376/696 (54%), Gaps = 35/696 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      I ++    I    G +   + 
Sbjct: 107 KTADKLAKL------GLTRSIDLVLHLPMRYEDETTLTPIRDLLPGGIAQTEGVVID-NE 159

Query: 82  FQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + + D  GE + L F       +K +   G+++ V G ++     + MVH
Sbjct: 160 VAYRPRRQLVVKIRDDDGEQLVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGMEMVH 218

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P      +      ++  VY    G+S    +K I  AL R P LPE +  ++    L+ 
Sbjct: 219 PAVRVVEADAPLPQVLTPVYPSTAGVSQAYLRKAIENALERTP-LPELLPPEIERDYLKP 277

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P++A+A  I+H+P    D     + + PA  R+ ++ELLA Q++L    ++ +    
Sbjct: 278 LGVPTLADAVRILHHPGVDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAA 337

Query: 253 IPINVEGKI-----AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +             ++   +PF  T +Q   + +I  D++  + M R+LQGDVGSGKT
Sbjct: 338 PAMPRRTARETDALTTRLYAALPFRLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKT 397

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 398 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKEKRAA 457

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           +E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 458 IEAAALGTAQLVIGTHAIIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAQG 517

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR P+ T ++   R DEVI R++  
Sbjct: 518 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPVLTRVVGDARRDEVIARVREA 577

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR+S  DK +VMD+F
Sbjct: 578 ALTGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAF 637

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 638 TRNEVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYS 697

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS     RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L++
Sbjct: 698 GPLSIAGRERLKTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLID 757

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR  A  ++   PD+ +      R L    QY +A
Sbjct: 758 PARAAAARLIAAYPDVVTQ--HLARWLGAREQYLKA 791


>gi|301299276|ref|ZP_07205562.1| ATP-dependent DNA helicase RecG [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853120|gb|EFK80718.1| ATP-dependent DNA helicase RecG [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 676

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 228/667 (34%), Positives = 375/667 (56%), Gaps = 30/667 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   RGVG K    L+K+            DLL ++P  + D      + EI+ + 
Sbjct: 3   LGDSVGVLRGVGPKKIQALNKL------GVNTIEDLLTFYPFRYNDI-AVKNLEEINSQE 55

Query: 69  IVTITGYISQHSS-FQLQKRR---PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            VT+ G ++      +  +++    +K+L+N     I + FF +    +      G+++ 
Sbjct: 56  KVTLKGIVASEPVLVRFGRKKSRLNFKLLINHD--VIGVTFFNQ--PWISKQVTTGQELA 111

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           V GK   L+  +  +    I   + D        VY     +   + K+++ +A      
Sbjct: 112 VYGKYDALRQSLSGIK--IISRKTND-----FVGVYRSSKDIKESVVKQLVKQAYEEYNS 164

Query: 185 -LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + + + +  K    +  +  + +H P   K+ +     R    +DE  + +  L L+
Sbjct: 165 YIRDVVPESIRIKYHLENRKQMIHDMHFPSTKKEADLA---RRSAIFDEFFSFEAGLQLL 221

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++   K +G+ I    +  ++ ++ +PF  TK+Q+  + +I  DM   N M R+LQGDVG
Sbjct: 222 KRDNHKNMGLRIKYNNEKLKEFIKGLPFELTKAQKRVVNEICADMLSPNHMNRLLQGDVG 281

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN--MPQ 361
           SGKT++A IAM A V AG QAV+MAP  ILAQQH E +    +   I V ++T +     
Sbjct: 282 SGKTIIAAIAMYATVTAGFQAVLMAPTEILAQQHAEKLANLFEQYGISVALMTSSSLSRV 341

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +R+ L+ + +G   I+IGTHA+ QD+I+++ L L I DEQHRFGV QR  L +K   P
Sbjct: 342 KVKRELLKHLKNGDIDIVIGTHAVIQDNIEFHNLGLAITDEQHRFGVNQRRILRKKGVNP 401

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L MTATPIPRTL +T+ G++D+S I E P GR+P+KT  +   ++  V E +K  L  
Sbjct: 402 EILAMTATPIPRTLAITTYGEMDVSIIDELPKGRQPVKTSWVKKKQVKNVFEFVKRQLEL 461

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNG 540
           G +AY I P +EE +  + ++  E F    E+F +  +A++HG+M   +KE  M +FKN 
Sbjct: 462 GTQAYIISPLVEESELLDLQNAEEVFEKAKEYFGSEKVALLHGKMDANEKEQAMQAFKNK 521

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVG+DV +A+++II +A+ FGLAQLHQLRGRVGRG + S CIL+  P  
Sbjct: 522 EVSILVSTTVIEVGVDVPNATVMIILDADRFGLAQLHQLRGRVGRGSKESYCILVADPK- 580

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           S+    R+ ++  T DGFLI+++DL+ R  GE+LG KQSG+P+F +  P ++ ++L++A+
Sbjct: 581 SEYGKERMKIMTETNDGFLISQKDLELRGPGEVLGKKQSGLPEFKVGDPVVNLNILQVAQ 640

Query: 661 KDAKHIL 667
           ++A +++
Sbjct: 641 EEAHNVV 647


>gi|315653368|ref|ZP_07906290.1| DNA helicase RecG [Lactobacillus iners ATCC 55195]
 gi|315489293|gb|EFU78933.1| DNA helicase RecG [Lactobacillus iners ATCC 55195]
          Length = 673

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 221/694 (31%), Positives = 358/694 (51%), Gaps = 33/694 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  LS++            DLLFY P  + D      ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALSQLK------IKTIYDLLFYFPRRY-DSLETFPLNELK 58

Query: 66  EERIVTITGYISQHSSFQLQK----RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I              R  +K+ ++     I + FF +    LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDHD--IIMVNFFNQ--PWLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS- 180
            I + GK       +       I    +       E VYSL + +        I +A+  
Sbjct: 115 DIAIYGKYVLASQTLSAYK---IVLKEE-----GFEPVYSLNSHIKQKKLVSFISQAIEK 166

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-A 239
            LP LPE I + L  K     +      +H P   KD +    A+    + E    Q+  
Sbjct: 167 YLPQLPEVIPQYLRDKYKLLDVKSMIIQMHQP---KDLQQVKIAQRTAIFLEFFVFQLQL 223

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   RM R+LQ
Sbjct: 224 SQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKRMNRLLQ 283

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   ++T + 
Sbjct: 284 GDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSST 343

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L  K  
Sbjct: 344 KLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGK 403

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++  +   L
Sbjct: 404 MVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQL 463

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
            +G + Y + P I E  + + ++    +  +  +F +  +A++HG+M+   K  +MD+F 
Sbjct: 464 EQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMASSQKSDIMDAFI 523

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S CI +  P
Sbjct: 524 HGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGSTQSYCIFVSDP 583

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             + N+  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     + ++   
Sbjct: 584 K-TDNAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINNYNIFTT 642

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           A+K++K ++ Q+P+L       +++   L +Y++
Sbjct: 643 AQKESKVLVNQNPELVGEEYDFLKL---LMEYDD 673


>gi|163845859|ref|YP_001633903.1| ATP-dependent DNA helicase RecG [Chloroflexus aurantiacus J-10-fl]
 gi|222523571|ref|YP_002568041.1| ATP-dependent DNA helicase RecG [Chloroflexus sp. Y-400-fl]
 gi|163667148|gb|ABY33514.1| ATP-dependent DNA helicase RecG [Chloroflexus aurantiacus J-10-fl]
 gi|222447450|gb|ACM51716.1| ATP-dependent DNA helicase RecG [Chloroflexus sp. Y-400-fl]
          Length = 872

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 238/743 (32%), Positives = 379/743 (51%), Gaps = 69/743 (9%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RP     L APL    G+  +      ++            DLL++ P  + D   R  I
Sbjct: 135 RPLAELNLDAPLEQIAGIDWRLVGGFRRL------GVRTIRDLLYHFPRRYDDVRNRRSI 188

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           SE+      T+ G ++   +     +   ++ ++D TG I  +FF ++   +      G+
Sbjct: 189 SELQVGAEETVIGEVTDVRTIGAGPKLRVRVEVSDETGSIEAIFFNQR--WIAQQIRVGQ 246

Query: 122 KITVTGKIKKLKNRIIMVHPH---YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            I ++GK+     +     P    Y       ++   +  ++ L  GL  +  ++ I + 
Sbjct: 247 TIALSGKVTTFGGKRQFSSPRWERYTPDPDALLHTGRLVPIHPLTQGLHENQVRRFIKQV 306

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           +  + P + + +    LQ      + EA   IH P    D    + AR RL +DE L  Q
Sbjct: 307 VDTMAPQVEDHLPPVRLQHARLLPLGEALAQIHFPT---DHTSLAAARRRLGFDEFLFIQ 363

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           I +L  ++ +++E+G    ++ ++  ++ R +PF  T +Q+ AI++I  D+ + + M R+
Sbjct: 364 IGVLQRKRLWQQEMGYAFTIDSQVHAELQRLLPFQLTTAQQRAIEEIFSDLRRPSPMARL 423

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK--------------- 342
           LQGDVGSGKT+VA  A+  AV  G Q  +MAP  ILA+QH + +K               
Sbjct: 424 LQGDVGSGKTVVAAAALLQAVANGFQGALMAPTEILAEQHAKNLKQLLSRVRVPRKTTSA 483

Query: 343 -----------------------------------KYTQNTQIIVEIITGNMPQAHRRKA 367
                                              +      + V ++TG++    RR+ 
Sbjct: 484 TASSAYQQADWRSLLDPEEAAQLAEIISILGMSPEEDMGGHGVRVALLTGSLGTRERRRV 543

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           LE IA G+  +++GTHAL  +++Q+ +L LV+VDEQHRFGV+QRL+L  K   PH+L+MT
Sbjct: 544 LEGIARGEIDLVVGTHALITETVQFAQLGLVVVDEQHRFGVEQRLRLKNKGYNPHMLVMT 603

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  GD+D+S + E+P GR+ I+T  +      +V   ++  ++EG++ Y 
Sbjct: 604 ATPIPRTLTMTIYGDLDVSVLDERPPGRQEIRTKRVGRAERAKVYRHIRKQVAEGRQVYV 663

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP +EE ++ +  S  E +  L         +A++HG++S  +K+ VM +F++    +L
Sbjct: 664 ICPLVEESEKLDLPSAEEMYERLQHEVFPDLRVALLHGKLSAREKDDVMRAFRDHQYDIL 723

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT VIEVGIDV +A+ I+IE AE FGLAQLHQ RGRVGRG   S CIL+     ++ S 
Sbjct: 724 VATAVIEVGIDVPNATTIVIEGAERFGLAQLHQFRGRVGRGHHQSYCILISDSD-NQQSK 782

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL+ L+ T DGF +AE DL+ R  GE  G +QSG P   +AQ +    LL  AR  A  
Sbjct: 783 ERLAALEQTTDGFKLAEIDLQLRGPGEFFGTRQSGTPDLKMAQ-QGDTRLLAEARALADA 841

Query: 666 ILTQDPDLTSVRGQSIRILLYLY 688
           IL  DP+L       +R  +  +
Sbjct: 842 ILADDPELKRPEHDLLRRKVNDF 864


>gi|282855835|ref|ZP_06265137.1| ATP-dependent DNA helicase RecG [Pyramidobacter piscolens W5455]
 gi|282586349|gb|EFB91615.1| ATP-dependent DNA helicase RecG [Pyramidobacter piscolens W5455]
          Length = 694

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 230/674 (34%), Positives = 374/674 (55%), Gaps = 23/674 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P++  RG+G+  +L L ++            DL+++ P  + DR     I +++   
Sbjct: 8   LDDPVTAIRGIGEAKALLLQRL------GIATAEDLVYFFPRRYEDRRQVVTIQDLAPGG 61

Query: 69  I-VTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
                   +        +  R  +I    L+DG      L+F R    L  +  EG ++ 
Sbjct: 62  PPQAFRARVVSIEQRVARSNRRMQITRVCLSDGKNVAWALWFNR--WNLSRILREGMELA 119

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDV-NFPLIEAVYSLPTGLSVDLFKKIIVEALSRL- 182
           + G ++  +    +++P +   +  D  +   I  VYS   GL+    +++I   L  L 
Sbjct: 120 LYGSLEPRRPVPELLNPEFEILDGSDPRSVGRIVPVYSATAGLNEKWLRRVIDTVLETLA 179

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
           P + + +   +++K  F   A A   +H P    D      AR+RL ++E    Q+ L L
Sbjct: 180 PTIADILPPPIVEKFHFIDAASAVRQMHQPT---DEALFRAARQRLVFEEFFLLQVGLAL 236

Query: 243 MRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
             ++   E   P +  +  + +K L  +PF  T  Q    ++I  DM +   M R+LQGD
Sbjct: 237 RHRRGCLEKKAPALAGQADLTRKFLAELPFELTDDQRRVAQEIADDMRRSVPMNRLLQGD 296

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA++A+  A+++G QA +MAP  +LAQQH   + ++     + V ++TG +  
Sbjct: 297 VGSGKTVVAVMALLQALDSGVQAAMMAPTAVLAQQHALTLNRWLAPLGVEVGLLTGGVAP 356

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL--TQKAT 419
           A ++K  E+++ G   +++GTHAL Q+++ + +L L+++DEQHRFGV QR  L     A 
Sbjct: 357 AEKKKIHEQLSDGTLRVVVGTHALIQEAVSFKRLGLIVIDEQHRFGVLQRKALNSKAGAE 416

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           APH L+MTATPIPRTL L+  GD+ +S I + P+GR+PIK+V I  NR+ +++  L+  +
Sbjct: 417 APHTLVMTATPIPRTLALSVYGDLAVSTIRQLPSGRQPIKSVWIGDNRLPKMLRFLEGEM 476

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
           + G++ YW+CP IEE +  +   +  RF  L   F +  +A++HGRM + +K +VM  F 
Sbjct: 477 AAGRQIYWVCPLIEESENFDAAPLESRFEKLRREFPNRRLAMLHGRMGEKEKNAVMTEFS 536

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   LL +TTVIEVG+DV +A+++++ENAE FGL+QLHQLRGRVGRG   S CIL Y  
Sbjct: 537 AGHIDLLASTTVIEVGVDVPNATVMVVENAERFGLSQLHQLRGRVGRGPTKSWCIL-YAD 595

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           P +  +  RL    +  DGF IAE D++ R  GE  G++Q G+  F +A      +++E+
Sbjct: 596 PKNSEAEHRLDQFCSLSDGFAIAEADMQLRGPGEFCGVRQHGLTDFRVADLIRDGAVMEV 655

Query: 659 ARKDAKHILTQ-DP 671
           AR++A  ++ Q DP
Sbjct: 656 ARQEAFALIAQGDP 669


>gi|188997024|ref|YP_001931275.1| ATP-dependent DNA helicase RecG [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932091|gb|ACD66721.1| ATP-dependent DNA helicase RecG [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 799

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 231/707 (32%), Positives = 384/707 (54%), Gaps = 36/707 (5%)

Query: 21  KKYSLFLSKIINCGNAN-ETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           +K    L+               D LF  P+ + DR    KI ++ +    T    +   
Sbjct: 100 EKLQSLLATEKKAFKKIQVCNVRDALFNLPNRYEDRR-IKKILKVKDGETGTFIAEVEDI 158

Query: 80  SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
                 K +  +++L       +  FF   +  L   F +G+K+ + GK+      I ++
Sbjct: 159 KKVNKGKLK-VEVILKQDNVRFSA-FFTHDSPYLFIAFRKGKKVKIFGKVSFFNKNISII 216

Query: 140 HPHYIFHNSQDVNFPLIEAVYSL-------PTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192
            P  +      ++   I  VYSL        TG +++  ++ + + + +   + +++  D
Sbjct: 217 QPEILEPVEDIID--RIAPVYSLRGDSSVKTTGQTLNHLRRGMYKIVEKFSSVKDYMPDD 274

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFK 248
           +L K +FP +++A   +H P  + D +    +    ++RL +DEL   Q+A    R   +
Sbjct: 275 ILSKYNFPPLSKAIKNVHFPEDSFDIDLLNNFQDIHQKRLIFDELFLLQLAQKYRRYLLQ 334

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K     I+V+        +N+PF  T+ Q   IK+IL D+ ++  M R++QGDVGSGKT+
Sbjct: 335 KHPSYKISVDPNFLTNFQKNLPFELTQVQIRTIKEILADIQKEIPMNRMVQGDVGSGKTV 394

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRK 366
           VA  A  A    G QA +MAP  ILA QHY   K + +N      + I+TG+M  + +++
Sbjct: 395 VAATASLAVALNGYQAAVMAPTEILAWQHYHNFKNFLKNYLKDYEIAILTGSMKTSEKKQ 454

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLL 425
             + +  G+  I+IGTHAL ++ +++  L L +VDEQHRFGV+QR  L +++   PHVL+
Sbjct: 455 VYKAVELGEIKILIGTHALLEEKLKFKNLALAVVDEQHRFGVEQRKALIERSDKMPHVLV 514

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L + GD+DISK+ + P GRKP+KTV++  +  +++ E +K  L++G++A
Sbjct: 515 MTATPIPRTLALANYGDLDISKLDQLPKGRKPVKTVLLFDDEREKMYEIIKQELNKGRQA 574

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           + + P I+E ++S+ +S  E +    E F    + ++HG+MS  +K+ +M  FK G   +
Sbjct: 575 FVVYPLIQESEKSDLKSAEEGYKHWQERFPDKKVLLLHGKMSQEEKDEIMKQFKEGKAHI 634

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG+DV +A++++IE A  FGL+Q+HQLRGR+GRG+    C L+    L    
Sbjct: 635 LVSTTVIEVGVDVPNATVMVIEEAHRFGLSQIHQLRGRIGRGQYEGYCFLVVPANLKYPL 694

Query: 605 Y------------TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
                         RL +L  T DGF IAE+DL+ R  GEI G +QSG   F IA     
Sbjct: 695 KDSTKEKSRLKTLERLKILVKTTDGFEIAEKDLELRGTGEITGTRQSGESDFSIADLTRD 754

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
             +LE+A K+A+ ++ +DP+L + R   ++ +L+  +Y + F  +  
Sbjct: 755 KEILELATKEAEELIKKDPELENHR--DLKQILF-EKYGQRFDLVNI 798


>gi|78188306|ref|YP_378644.1| ATP-dependent DNA helicase RecG [Chlorobium chlorochromatii CaD3]
 gi|78170505|gb|ABB27601.1| ATP-dependent DNA helicase RecG [Chlorobium chlorochromatii CaD3]
          Length = 706

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 245/714 (34%), Positives = 382/714 (53%), Gaps = 36/714 (5%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             ++  +GVG + ++ L      G        DLL Y+P  ++DR    ++  + +  + 
Sbjct: 5   TSVAFLKGVGSRKAVVL------GEVGIVTVDDLLAYYPRRYLDRRSIKRVRALVDGELT 58

Query: 71  TITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           T+ G I +         +  +K  L+DG+G + L +F R        F +G  + V GK+
Sbjct: 59  TVVGTIVRTQLEQPTSGKARFKAWLDDGSGLLELTWF-RSVRYFSRFFTKGESLAVHGKV 117

Query: 130 KKLKNRIIMVHPHYIFHNSQDV-------------NFPLIEAVYSLPT-----GLSVDLF 171
               N+  M HP Y     ++              N   I  +Y         GL+    
Sbjct: 118 SFFGNQAQMQHPDYDRLTPENAVGGEKGSDDFALFNTGAIIPLYHTTEAMKQAGLASRQL 177

Query: 172 KKIIVEALSRLPVLP-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
           + +I  AL  +P    E +   ++++       EA   IH P   +  E     R RL +
Sbjct: 178 RVLIKRALEEVPFREQENLPLSIIRQYGLIPQWEAEREIHLPSSPEKLEQA---RYRLKW 234

Query: 231 DELLAGQIALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
            EL   Q+   L R    +    +     G++ +K+  ++P+  T+ Q+ A++DI +D+ 
Sbjct: 235 TELFYAQLLFALRRSTLRRNRAAVRFTHSGELTRKLHESLPYQLTEGQKQAVRDIYRDLR 294

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
             + M R+LQGDVG+GKT+VA+ AMA AV+ G QA++MAP  ILA QH   +K++     
Sbjct: 295 SGSPMNRLLQGDVGAGKTMVAMFAMALAVDNGLQAMVMAPTEILAVQHALVMKRFFAPLG 354

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           I + ++TG   +  RR  LE++  G   +++GTHAL +  +QY    LVI+DEQHRFGV 
Sbjct: 355 IELGLLTGKQGKKERRATLEKLRTGDMQLVVGTHALLEPDVQYANPGLVIIDEQHRFGVL 414

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR  L +KA  PHVLLMTATPIPRTL +   GD+D+S I +KP GR+PIKTV+       
Sbjct: 415 QRKALQEKAANPHVLLMTATPIPRTLSMGMFGDLDLSIIRDKPVGRQPIKTVLKKEQDKP 474

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSD 527
            V   ++  ++ G++ Y I P +EE ++ + ++ VE +  L        SI +IHG+MS 
Sbjct: 475 SVYHFVREQIAAGRQGYIIYPLVEESEKMDLKAAVESYEELSTAIFPDLSIGLIHGQMSP 534

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +KE VM+ F+     +L+ TTVIEVG+DV +A+++IIE+AE FGLAQLHQLRGRVGRGE
Sbjct: 535 DEKEHVMERFRQREFSILVGTTVIEVGVDVPNATVMIIEHAERFGLAQLHQLRGRVGRGE 594

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLI 646
             S+CILL    ++ ++  RL  + +T DGF+++E D K R  G +LG +QSG +    I
Sbjct: 595 HPSTCILLT-AKMTADARERLLAMVSTNDGFVLSELDAKIRGVGNLLGKEQSGTLSGLRI 653

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A     ++++  AR+ A  ++  D  L +   + +R   Y+  Y+E F     G
Sbjct: 654 ADLNTDEAIMAAARQAAFTLVEADAQLRATEHRMVR-EHYMRYYHERFSLADIG 706


>gi|266623315|ref|ZP_06116250.1| ATP-dependent DNA helicase RecG [Clostridium hathewayi DSM 13479]
 gi|288864892|gb|EFC97190.1| ATP-dependent DNA helicase RecG [Clostridium hathewayi DSM 13479]
          Length = 683

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 220/693 (31%), Positives = 373/693 (53%), Gaps = 20/693 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            PL + +G+G+K     +K+            +LL Y+P ++        + E+  + ++
Sbjct: 4   QPLDSLKGIGEKTGRLFAKL------GIETVDELLEYYPRAYDACEEPVSVGELKPDTVM 57

Query: 71  TITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            ++G + + +  +     +    ++ D TG +TL ++      L      G +    G++
Sbjct: 58  AVSGVLFKSAEVKRYSHIQVITTMIRDITGSLTLTWYN--MPYLHATLKAGMRAVFRGRV 115

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            K   R+ M  P     ++       ++ +Y    GL      + + +ALS   ++ +++
Sbjct: 116 VKKNGRLTMEQPEIFLGDAYGEVIHSMQPIYGQTKGLPNKTIVRAVKQALSARQMVRDYM 175

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQFK 248
             DL  +        A   IH P    +  +    R+RL +DE     +A+  ++ ++  
Sbjct: 176 PLDLRIRHELAEYNFAIEHIHFPTDRTELLFA---RKRLVFDEFFLFLMAVRRLKDRRVD 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +E   P+    +   ++++N+P++ T +Q   + ++ +DM+ K  M R++QGDVGSGKT+
Sbjct: 233 RESHFPMKPSDE-VMRLVKNLPYALTNAQNKVLTEVFRDMTGKKVMNRLIQGDVGSGKTI 291

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRK 366
           +A++A+      G Q  +M P  +LA+QHYE +    +   I   V ++TG+M    +R 
Sbjct: 292 IAVLALLETACNGFQGALMVPTEVLARQHYESMLSLFEENGIEKQVVLVTGSMTAKEKRT 351

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
           A E+IA  +A II+GTHAL Q+ + Y KL LVI DEQHRFGV QR  L  K   PH+L+M
Sbjct: 352 AYEKIASHEADIIVGTHALIQEKVVYDKLALVITDEQHRFGVSQREMLGDKGDEPHILVM 411

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL +   GD+DIS I E PA R PIK  ++  +        +K  ++ G++AY
Sbjct: 412 SATPIPRTLAIIIYGDLDISIIDELPANRLPIKNCVVDTSYRSTAYSFIKGEVAAGRQAY 471

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            ICP +E  +     +V++    L       S+  +HG+M   +K ++M+ F  G  K+L
Sbjct: 472 VICPMVEASEMIEAENVLDYSKKLQSALPGISVEYLHGKMKAREKNAIMERFAAGEIKVL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CIL+      + + 
Sbjct: 532 VSTTVVEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGKHQSYCILV-DGSGQEGTR 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL++L  + DGF IA EDLK R  G+I G++QSG  +F +A      ++L+   ++   
Sbjct: 591 ERLTILSKSNDGFYIASEDLKLRGPGDIFGLRQSGDLEFKLADIFTDANILKTVSEEVNR 650

Query: 666 ILTQDPDLTSVRGQSI--RILLYLYQYNEAFQF 696
           +L +DP+LTS     +  ++ LYL +  +    
Sbjct: 651 LLDEDPELTSEEHIELGKKLSLYLEKSYDKLNL 683


>gi|167745671|ref|ZP_02417798.1| hypothetical protein ANACAC_00363 [Anaerostipes caccae DSM 14662]
 gi|167654983|gb|EDR99112.1| hypothetical protein ANACAC_00363 [Anaerostipes caccae DSM 14662]
          Length = 676

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 213/681 (31%), Positives = 365/681 (53%), Gaps = 15/681 (2%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
              +   +G+G+K      K+             L+  +P  ++       +SE++    
Sbjct: 4   DTNIQCLKGIGEKTYNGFKKL------GVETVDSLITMYPRYYLTYEDPVLLSELTAGER 57

Query: 70  VTITGYISQHSSFQL-QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
             +   I+   + +  +  +    L  D +G +T  +F      LK     G      G 
Sbjct: 58  AAVQVRITSDVNIRYVRGLKIVSCLGRDSSGTMTFTWFN--MPYLKKQIHRGEDYIFVGT 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
                 R++M HP              ++ VY L +G++     K +++    +  + E+
Sbjct: 116 AVFKNGRLMMEHPEIFKEEDYSAKQQTLQPVYPLTSGITNKTVSKAVMQTEEYIKGIREY 175

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           + + +L+K      +EA   +H PR   D +    A++RL +DE       + LM+++ +
Sbjct: 176 LPEQILKKYRPMDYSEAIWNVHFPR---DKQTLVEAKKRLIFDEFFIFMAGMNLMKQEHR 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +E           A ++++++P+  T +Q+ A+ ++ +D+  +  M R++QGDVGSGKT+
Sbjct: 233 EEKNRYPIPVCGEADRLIQSLPYELTGAQKRALLEMQKDLMGEKVMNRLVQGDVGSGKTI 292

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           +A+I +    +AG Q V+MAP  +LA QHYE  ++      +   ++TG++    +R+  
Sbjct: 293 LAVILLLMCAKAGYQGVLMAPTEVLASQHYETFQELLGPFGVSAALLTGSVKAKEKREIY 352

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           + I + +  I+IGTHAL QD+++Y +L LVI DEQHRFGV+QR  L++K   PHVL+M+A
Sbjct: 353 QGIKNHEYDIVIGTHALIQDAVEYDRLALVITDEQHRFGVRQREILSKKGKEPHVLVMSA 412

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +   GD+D+S I E P  R PIK  ++  +        ++  ++EG++ Y I
Sbjct: 413 TPIPRTLAIIMYGDLDVSVIDELPKNRLPIKNCVVNQSYRPNAYRFMEKQVAEGRQIYII 472

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP +EE +     +V++  N L E F  S  I ++HG+M   +K+ +MD F   + ++L+
Sbjct: 473 CPMVEESEAMEGENVIQYANMLREQFPPSIQIGVLHGKMKPKEKQKIMDEFSERSIQILV 532

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE  S CI +      K +  
Sbjct: 533 STTVIEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEHQSYCIFMSGVKK-KETME 591

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL VL  + DGF IA +DLK R  G+  G++QSGM  F++A    +  LL+ A      +
Sbjct: 592 RLEVLNKSNDGFYIANQDLKLRGPGDFFGVRQSGMMDFVLADIYTNADLLKQASDAVHQL 651

Query: 667 LTQDPDLTSVRGQSIRILLYL 687
             ++ D ++++   +   + L
Sbjct: 652 CEEEFDFSTLKNSRLEKQISL 672


>gi|148657621|ref|YP_001277826.1| ATP-dependent DNA helicase RecG [Roseiflexus sp. RS-1]
 gi|148569731|gb|ABQ91876.1| ATP-dependent DNA helicase RecG [Roseiflexus sp. RS-1]
          Length = 842

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 238/733 (32%), Positives = 369/733 (50%), Gaps = 59/733 (8%)

Query: 3   PSFLNPL--FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           P+   PL   +PL    G+ +  +    ++            DLL++ P  + D      
Sbjct: 114 PASARPLTPDSPLEDVPGITRIMAQSFRRL------GVRTVRDLLYHFPHRYDDFTSHRT 167

Query: 61  ISEISEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+E+    + TI   +    +  ++       +L+ D TG + ++FF  +   L   F  
Sbjct: 168 IAELQPGAVETIVAEVLDARTVPMKSGGTRLDVLVGDETGTLKVVFF--RQPWLAQRFTV 225

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYI-FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           G K+ ++GKI        M  P +  F +   ++   +  V+ L  GL     + +I   
Sbjct: 226 GTKVVLSGKIGIYDGLRQMASPEWQPFTDDDLIHVGRLVPVHPLTRGLVERSARTLIKHV 285

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + R  P+L + +   +L++     +++A   IH P   +  E     R RL +DE L  Q
Sbjct: 286 VDRCAPMLEDHLPPAVLERTGLMPLSQAIAQIHFPESHEMLERA---RRRLGFDEFLFIQ 342

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + +L  R  ++ + G  I     + +  LR +PF  T +Q  A+++I  DM +   M R+
Sbjct: 343 LGVLQRRVIWQAQQGYAITRRDDVHEAFLRQLPFELTGAQVRALEEIFADMERPVPMARL 402

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK--------------- 342
           LQGDVGSGKT+VA  A    + AG QA IMAP  ILA+QHY  ++               
Sbjct: 403 LQGDVGSGKTVVAAAAALQVIAAGFQAAIMAPTEILAEQHYRSLRSLLGKVPVPRDDRHA 462

Query: 343 -------------------------KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                                           + V ++TG++    RR+ LE IA G   
Sbjct: 463 PMDDLDPEQRERLEEIRRILGMSGDDDLDGRGVRVALLTGSLGAKERRRVLEGIARGDID 522

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           +I+GTHAL  + +QY  L L ++DEQHRFGV+QR +L  K   PH+L+MTATPIPRTL L
Sbjct: 523 LIVGTHALISEGVQYAALGLAVIDEQHRFGVEQRQRLKDKGYNPHMLVMTATPIPRTLTL 582

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           T  GD+D+S + E P GR+ IKT  I     ++    ++  +++G++A+ ICP ++E ++
Sbjct: 583 TIYGDLDVSILDELPPGRQEIKTRWITTVEREKAYRHIRREVAKGRQAFVICPLVDESEK 642

Query: 498 SNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            +  S  E   +L         IA+IHG+M   +K++VM +F+N    +L+AT VIEVGI
Sbjct: 643 VDLPSAEEMHATLSRDVFPDLRIALIHGKMPPREKDAVMIAFRNHEYDILVATAVIEVGI 702

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A+ I+IE AE FGLAQLHQ RGRVGRG   S CIL+     ++ +  R++ ++   
Sbjct: 703 DVPNATTILIEGAERFGLAQLHQFRGRVGRGIHQSYCILVCDKDQNEVTRQRMAAMEQIS 762

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           DGF +AE DL+ R  GE  G +QSG P   +AQ      LL  A ++A+ IL  DP L  
Sbjct: 763 DGFRLAEIDLQLRGPGEFFGTRQSGTPDLKVAQLA-DTRLLHTAYREAQKILADDPRLER 821

Query: 676 VRGQSIRILLYLY 688
                +R  +  +
Sbjct: 822 PEHTLLRAKMDEF 834


>gi|302337840|ref|YP_003803046.1| ATP-dependent DNA helicase RecG [Spirochaeta smaragdinae DSM 11293]
 gi|301635025|gb|ADK80452.1| ATP-dependent DNA helicase RecG [Spirochaeta smaragdinae DSM 11293]
          Length = 707

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 223/700 (31%), Positives = 355/700 (50%), Gaps = 31/700 (4%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           FL  L  P++   GVGKK +  L+++            DLL   P  + DR     I   
Sbjct: 2   FLGELRKPVTVLHGVGKKSTERLARL------GVRHIADLLRLLPRQWEDRSRLVPIVRA 55

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            + R       I  H  F     +  K+ + D T    LL F R    L      G +I 
Sbjct: 56  GDARPALTVVEIVAHDWFGKPHNQTLKVFVQDETSVAVLLCFNRN--FLAGKLPVGARIL 113

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDV-----------------NFPLIEAVYSLPTGLS 167
           +   ++     +      ++      +                     I  VY L  GL+
Sbjct: 114 LYAPLQHRFGELQAASFDFVPAGKYPLTREEDYLSEVPKISGRGGIGSILPVYPLTEGLT 173

Query: 168 VDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226
               + ++ +A+      + + + + + +    P +AEA  +IH PR+ ++ E     R+
Sbjct: 174 QGALRDLMQQAMEGFGKFVDDELPEAIRRDHGLPHLAEALVMIHRPRRIEEPEE---GRK 230

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286
            LA++EL   Q A+       K++    + +E  +  + +R++PFS T  Q+ A+++I++
Sbjct: 231 ALAFNELFHLQCAVTRRGALRKRKERPSLALETGLVDRCIRDLPFSLTADQKQAVEEIIE 290

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           D+ +   M R+LQGDVGSGKTL AL++    +EAG Q   MAP  +LA+QH E   +   
Sbjct: 291 DLKRPYPMARLLQGDVGSGKTLTALLSALPIIEAGYQVAFMAPTELLARQHAENSARILA 350

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              + + + TG++P   R++ L  +  G+  +++GTH LF  S+++ +L   I+DEQH+F
Sbjct: 351 PLGVRIALFTGSIPSPARKELLVALQEGEIDLVVGTHTLFSSSVRFRRLRYCIIDEQHKF 410

Query: 407 GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           GV QR  L  K   P +L MTATPIPRT+ LT+ GD+ +S I   P GRKPI T +  + 
Sbjct: 411 GVMQRQGLLDKGEFPDLLTMTATPIPRTMALTAFGDLAVSVIRTMPPGRKPIITHLAKVE 470

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGR 524
              +V   ++  L  G +AY++ P IEE       S    +  L E       IA++H R
Sbjct: 471 NRPKVYAAVEKELERGGQAYFVYPLIEEGSREKIDSAESMYRLLREEVFPQRRIALLHSR 530

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           + +  KE  M  F +G   +L+AT+V+EVG+D  +AS ++IE+AE FGL+ LHQLRGRVG
Sbjct: 531 IDEEIKEREMGRFLSGELDILVATSVVEVGVDAPNASCMVIEHAEQFGLSALHQLRGRVG 590

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           R +  S C L++   L++    RL ++K   DGF+IAEEDLK R  GE+ G++Q+G+   
Sbjct: 591 RSDRQSYCFLVFSEGLTETGKQRLRIMKENNDGFVIAEEDLKLRGPGELSGMRQAGVLNL 650

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
             A       +LE +RK+A  I++ D +L     Q ++ L
Sbjct: 651 QFADLLKDGEILEASRKEATAIVSGDFELEHADHQVLKRL 690


>gi|28210919|ref|NP_781863.1| ATP-dependent DNA helicase recG [Clostridium tetani E88]
 gi|28203358|gb|AAO35800.1| ATP-dependent DNA helicase recG [Clostridium tetani E88]
          Length = 683

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 234/688 (34%), Positives = 374/688 (54%), Gaps = 26/688 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           ++  +   +GVG K    L+K            IDLL Y P  +        + +  E++
Sbjct: 3   IYNSVGVLKGVGPKTLENLNK------CGIFTIIDLLLYFPRDYKIIKTCTSLKDALEKQ 56

Query: 69  IVTITGYISQHSS--FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            + IT  + +          +    I+L +    I   +F +    +KN F  G+K T+ 
Sbjct: 57  EIIITAEVLEIKRDVRTRSGKVISTIILQNEEERIKCRWFNQ--PYIKNRFRIGKKYTLN 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           GK+   K   ++++P  +  N++  N    ++  +Y L  G+  +   K+I + L +L +
Sbjct: 115 GKLDVYKGEKLIINPKTVEKNAEATNCTKEIVIPIYPLREGVKNNTLVKLIKDVLDKL-I 173

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E +   +++K +F S+ E+   IHNP      E+    + RL + EL    + + L++
Sbjct: 174 IDENLPTWIMKKYNFCSLDESIRAIHNPISESQLEFA---KRRLKFQELFTYSLKIALLK 230

Query: 245 KQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +  K+   GI   +  +   K+   + F  TK+Q+  +++IL+D ++   M R++QGDVG
Sbjct: 231 ESRKQSNKGISFKIYKEEINKLQDKLNFQLTKAQKIVLEEILKDQNKNISMNRLVQGDVG 290

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A+I +      G Q V+M P  ILAQQH+  IK       I VE++ G+     
Sbjct: 291 SGKTILAIITLLNVAMNGYQGVLMVPTEILAQQHFIEIKNLLSEFNIRVELLCGSTSNKE 350

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +      +  G+  IIIGTHAL +D +++ KL +VI DEQHRFGV QR KL  K     +
Sbjct: 351 KSNIKAALKGGEIDIIIGTHALIEDDVEFEKLGIVITDEQHRFGVMQRNKLFTKGEGADI 410

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL L   GD+DIS I E P GR+ + T  I   + D +       ++EG+
Sbjct: 411 LVMTATPIPRTLSLYLYGDLDISIIDELPPGRQKVDTYFINEKKRDRIYSFALKEINEGR 470

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGT 541
           + Y +CP +EE  +    SV E +  L E++ + I   I+HG+M+  +K  +M  FKN  
Sbjct: 471 QVYVVCPLVEENDQLELTSVEELYKDLKENYFNEIEMEILHGKMTPKEKNDIMLRFKNNE 530

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            K+LI+TTVIEVGI+V +A+I+++E AE FGLAQLHQLRGRVGRG E S CIL+ +   +
Sbjct: 531 IKILISTTVIEVGINVPNATIMVVEGAERFGLAQLHQLRGRVGRGSEKSYCILMGNIK-N 589

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            N+  R+  L  + DGF IAE+DLK R  GE+ G +Q G    +++ P     +L+IA  
Sbjct: 590 MNTRKRMETLVKSNDGFFIAEQDLKIRGSGELFGFRQHGEENLILSNPIEDIEILKIAHN 649

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           +++ +L       S + + ++IL YL +
Sbjct: 650 ESQELLK------SNKKEDLKILGYLGE 671


>gi|260655186|ref|ZP_05860674.1| ATP-dependent DNA helicase RecG [Jonquetella anthropi E3_33 E1]
 gi|260630108|gb|EEX48302.1| ATP-dependent DNA helicase RecG [Jonquetella anthropi E3_33 E1]
          Length = 691

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 227/670 (33%), Positives = 352/670 (52%), Gaps = 22/670 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PL+  +GVG   +  L ++            DLL++ P  + DR     ++    + 
Sbjct: 10  LRSPLTDLKGVGSARADALGRL------GLFSIEDLLYFFPRRYEDRRTLVPLASAVHDA 63

Query: 69  IVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
                  +   S  +  K+     +  L+DG      L+F R    L+     G ++ + 
Sbjct: 64  QGAFRAVVLSWSRLRSPKKGVSMLRASLSDGQSVAGALWFGRPG--LERALQAGTELALW 121

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSR-LP 183
           GK+ +  NR+ +++P                I  +Y     L     ++++  A+   + 
Sbjct: 122 GKVNRRGNRVELINPELEVLRGGQEPTIIGTILPIYPGTAQLPDRWLRELVSRAVDFGVS 181

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            L E + + L+ ++ +P    A   +H P           AR RLA++E L  QI L L 
Sbjct: 182 QLTETLPESLISERGWPDAKTAVFQMHRPTSR---SGWLAARTRLAFEEFLWLQIGLALR 238

Query: 244 RKQFKKEIGIPI--NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           R    KE   P    +   + Q  L  + FS T  Q  A  +I +D+     M ++LQGD
Sbjct: 239 RAGSDKEARAPRLDGLARPLRQAFLDRLGFSLTDDQRRATAEIDEDLMNPAGMNKLLQGD 298

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT VAL+AM  AVE+G QAV+MAP  +LA QH+  ++++     +   ++ G + Q
Sbjct: 299 VGSGKTAVALLAMLRAVESGKQAVLMAPTQVLAFQHWMTVRRWLDPLGVKTALLAGGLKQ 358

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATA 420
           + + + L  +A G   + IGTHAL Q+ + +  L +V++DEQHRFGV QR  L+ +    
Sbjct: 359 SEKEEILTGLADGTIDLAIGTHALVQEGVDFADLGVVVIDEQHRFGVLQRRTLSARSGGQ 418

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH L+MTATPIPRTL L+  GD+ +S +  KPAGR PI+T  +  ++  +++  L+  + 
Sbjct: 419 PHRLVMTATPIPRTLALSIYGDLSLSTLRHKPAGRLPIRTSWVSESKRPDLLNWLEEQMD 478

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
            G++ YWICP IEE +E    ++  RF  L   F +    ++HGRM+  +K +VM+ F  
Sbjct: 479 GGRQVYWICPIIEESEELPVAALEARFAELKARFGAERTGMLHGRMTSDEKTAVMEDFSA 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   LL ATTVIEVG+DV +A++++IE+AE FGL+QLHQLRGRVGRG+  S C LL H  
Sbjct: 539 GRLTLLAATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDRQSWCFLLSHA- 597

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
               S  RL     T+DGF IA+ D+  R  GE  G++Q G+  F +A       L+E A
Sbjct: 598 -GGPSAERLRAFCRTDDGFAIADLDMSLRGPGEFCGVRQHGITDFRVADLVRDVQLMEDA 656

Query: 660 RKDAKHILTQ 669
           +K A+ ++  
Sbjct: 657 QKTARKMVQA 666


>gi|312874514|ref|ZP_07734539.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 2053A-b]
 gi|311089905|gb|EFQ48324.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 2053A-b]
          Length = 673

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 220/694 (31%), Positives = 358/694 (51%), Gaps = 33/694 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  LS++            DLLFY P  + D      ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALSQLK------IKTIYDLLFYFPRRY-DSLEIFPLNELK 58

Query: 66  EERIVTITGYISQHSSFQLQK----RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I              R  +K+ ++     I + FF +    LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDHD--IIMVNFFNQ--PWLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS- 180
            I + GK       +       I    +       E VYSL + +        I +A+  
Sbjct: 115 DIAIYGKYVLASQTLSAYK---IVLKEE-----GFEPVYSLNSHIKQKKLVSFISQAIEK 166

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-A 239
            LP LPE I + L  K     +      +H P   KD +    A+    + E    Q+  
Sbjct: 167 YLPQLPEVIPQYLRDKYKLLDVKSMIIQMHQP---KDLQQVKIAQRTAIFLEFFVFQLQL 223

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   RM R+LQ
Sbjct: 224 SQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKRMNRLLQ 283

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   ++T + 
Sbjct: 284 GDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSST 343

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L  K  
Sbjct: 344 KLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGK 403

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++  +   L
Sbjct: 404 MVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQL 463

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
            +G + Y + P I E  + + ++    +  +  +F +  +A++HG+M+   K  +MD+F 
Sbjct: 464 EQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDRVALLHGKMASSQKSDIMDAFI 523

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S CI +  P
Sbjct: 524 HGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYCIFVSDP 583

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             + ++  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     + ++   
Sbjct: 584 K-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINNYNIFTT 642

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           A+K++K ++ Q+P+L       +++   L +Y++
Sbjct: 643 AQKESKILVHQNPELVGEEYDFLKL---LMEYDD 673


>gi|319892225|ref|YP_004149100.1| ATP-dependent DNA helicase RecG [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161921|gb|ADV05464.1| ATP-dependent DNA helicase RecG [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464678|gb|ADX76831.1| ATP-dependent DNA helicase RecG [Staphylococcus pseudintermedius
           ED99]
          Length = 681

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 213/668 (31%), Positives = 354/668 (52%), Gaps = 21/668 (3%)

Query: 6   LNPLFAP--LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
           LN +  P  L   +G+G K    L+++      N     DL+ Y P+ + D      ++ 
Sbjct: 4   LNLIENPYALKDIKGLGPKRLAILNEM------NIHTIQDLVLYLPTRYEDNT-LVDLTT 56

Query: 64  ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
             +E  VT+ G +    +     R   K+ ++     I +   +     LKN       +
Sbjct: 57  AEDESHVTVRGEVYSTPTVAFFGRNRSKLTVHLMINGIAVKAVFFNQPYLKNKIQLHETV 116

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            + GK  + K  I      +      D  F     VY +  GL     + +I + L  + 
Sbjct: 117 VIKGKWSRRKQEINGQKMFFDLSQLADAQF---TPVYRVKEGLKQKTLRDMIQQTLQDI- 172

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-L 242
            + EW+   + ++    ++ +  + +    +AKD +    AR   A+ E    ++ +  L
Sbjct: 173 TIHEWLPASMREQYKLETLHDTIHAL---HEAKDQQSLLRARRTFAFTEFFMFELRMQWL 229

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            R +   E  I +  + +  +  +  +PF  T+ Q+ ++ +I +D+    RM R+LQGDV
Sbjct: 230 NRMEKMSEEAIEVQYDIQQVKTFIETLPFELTEGQKQSVNEIFRDLKAPIRMHRLLQGDV 289

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA I M A   AG Q+ +M P  ILA+QH E + +        V ++TG++   
Sbjct: 290 GSGKTVVAAICMYAMKTAGYQSALMVPTEILAEQHAESLVELFGPYM-NVALLTGSVKGK 348

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R+  LER+A+G+   +IGTHAL QD + ++ + LVI DEQHRFGVQQR KL +K    +
Sbjct: 349 KRQLLLERLANGEIDCLIGTHALIQDDVAFHNVGLVITDEQHRFGVQQRQKLREKGALSN 408

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL ++  G++D+S I   P GRKPI+T  +   +  +VIE ++  L +G
Sbjct: 409 VLFMTATPIPRTLAISVFGEMDVSSIKSLPKGRKPIETYWVKHEQYAQVIEHMERELRQG 468

Query: 483 KKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNG 540
           ++AY I P IE  +   + ++ +  + +L        I ++HG+MS  +K+ VM  +   
Sbjct: 469 RQAYVISPLIESSEHLEDVQNAIALYENLQVALPQRRIGLLHGKMSADEKDDVMHRYSAH 528

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR +  S C+L+  P  
Sbjct: 529 ELDVLVATTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDFQSYCVLIASPK- 587

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    R+ ++  T DGF ++E+DL+ R  G+  G+KQSG+P FL+        +LE+AR
Sbjct: 588 TETGIERMQIMTQTTDGFELSEKDLEMRGPGDFFGVKQSGLPDFLVGNLVEDYRMLEVAR 647

Query: 661 KDAKHILT 668
            +A  ++ 
Sbjct: 648 DEAAQLMQ 655


>gi|332976649|gb|EGK13490.1| DNA helicase RecG [Desmospora sp. 8437]
          Length = 681

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 229/666 (34%), Positives = 365/666 (54%), Gaps = 17/666 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++   GVG K +  L K+            DLL Y P  + D      ISE   +   T
Sbjct: 7   PVTEVPGVGPKRAEELEKL------GIRTVADLLGYFPYRYDDFRVI-DISEAIHDDKAT 59

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    S +   ++  ++        + +   +     L+     G +I V+G    
Sbjct: 60  LEGVLYGPPSIRWYGKKKSRLTARIEVNGVHVGVVWFNQPFLRKKLKPGLRIIVSGTWDA 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIE 190
            + ++          +        +E VYS+   + V   ++ I +A +     + E + 
Sbjct: 120 HRLQLTADRS--WIGDESKGRVNRMEPVYSVTGSIQVSWLRRTIHQAFAAFGREIEEVLP 177

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           + + ++      A+A   +H P+     +    AR R+ Y+EL   ++ LL  RKQ K+ 
Sbjct: 178 EGIRRRYRLLDRAKAMYYLHFPKGR---DEGKQARRRMVYEELFLYELRLLWHRKQQKER 234

Query: 251 IG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
              I    + +  + ++R++PF  T +Q   +++IL DM   +RM R+LQGDVGSGKT+V
Sbjct: 235 DRGIAHRFDRERVEALIRDLPFPLTGAQRRVVEEILADMEAGSRMNRLLQGDVGSGKTVV 294

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A I + A   +G Q  +M P  ILA+QH   +++      I +E++TG+M    +R  L 
Sbjct: 295 AAIILYANWLSGYQGALMVPTEILAEQHLRSLQETLAPVGIHLELLTGSMTTREKRDVLS 354

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           RI  G A +++GTHAL Q+++ Y  L LVI DEQHRFGV+QR  L +K  +P VL MTAT
Sbjct: 355 RIQMGLADLVVGTHALIQENVHYRNLGLVITDEQHRFGVRQRSILREKGESPDVLHMTAT 414

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL +T+ GD+DIS I E PAGR+P++T  +  +    V++ +     EG++AY IC
Sbjct: 415 PIPRTLAITAYGDMDISTIDEMPAGRQPVETFWVKRDVWSRVVDFIGKTCREGRQAYVIC 474

Query: 490 PQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P IEE ++ + ++    F  +        + ++HGRM+  +KE VM SF +   ++L++T
Sbjct: 475 PLIEESEKVDLQNAQAVFEEIAVSLAPIRVGLLHGRMTPAEKEEVMQSFADNQTQVLVST 534

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TV+EVG++V +A++++I++A+ FGLAQLHQLRGRVGRG   ++CIL+  P  S+    R+
Sbjct: 535 TVVEVGVNVPNATVMVIDDADRFGLAQLHQLRGRVGRGGGEATCILVADPK-SETGVERM 593

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            V+ +T DGF IA  DL+ R  G+  G+KQSG P+F +A       +LE+AR DA  +L 
Sbjct: 594 RVMTDTTDGFEIARRDLELRGPGDFFGVKQSGAPEFRVADLIGDFRVLEVARADAAALL- 652

Query: 669 QDPDLT 674
           +DPD  
Sbjct: 653 EDPDWE 658


>gi|283781500|ref|YP_003372255.1| ATP-dependent DNA helicase RecG [Pirellula staleyi DSM 6068]
 gi|283439953|gb|ADB18395.1| ATP-dependent DNA helicase RecG [Pirellula staleyi DSM 6068]
          Length = 699

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 227/702 (32%), Positives = 370/702 (52%), Gaps = 23/702 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   RG+G   + +L ++            D+LF  P S+ D     ++S++ E  
Sbjct: 11  LATPVEEIRGIGPARAPYLHRL------ELRTARDVLFCFPRSYQDMSELREVSQLEEGV 64

Query: 69  IVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           + ++ G + +     L+  R    +L+  GT  I  ++F +    L++ +  GR++ V+G
Sbjct: 65  MASVVGVVEEVDFRPLRNGRTLLAVLVRQGTQYIRCMWFSQG--FLRDKYKPGRRVLVSG 122

Query: 128 KIKKLKNRIIMVHP-HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVL 185
             K    R    HP   +  + +D     I  VYSL  G++    ++++   + +    L
Sbjct: 123 APKLQGLRWEFTHPRTQMLADDEDAPTGRILPVYSLTDGITQTQMRRMVQNVVEKYSEYL 182

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E    +L +      I+EA   +H P   +  E     R R  Y ELL  Q+AL   + 
Sbjct: 183 EEVFPDELRKAHDLLPISEATLEVHFPTSKERLEGA---RRRFIYQELLVLQLALCWRKS 239

Query: 246 QFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           + +     +P+ ++ +I  +I R +PF+ T+SQ   I +I  DM +   M R+LQGDVGS
Sbjct: 240 RLETNCTAVPMPIDARIDARITRLLPFALTESQRQVINEITADMGRDRPMNRLLQGDVGS 299

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA+ AM   V  G QA +MAP  +LA+QH   +      +++ +  +TG+MP   R
Sbjct: 300 GKTVVAMFAMLLTVAHGRQAALMAPTEVLARQHARTLADRLAASRVRIACVTGSMPTGER 359

Query: 365 RKALERIAHGQAHIIIGTHALFQ----DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           ++ L +I  G+  I++GTHA+        + + KL LV++DEQH+FGV+QR  L      
Sbjct: 360 KQTLAKIQQGEIDIVVGTHAIAASAGGSDLPFAKLGLVVIDEQHKFGVRQRAALKGAGEN 419

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH L+MTATPIPRT+ LT  GD+++S +T  P GR+ + T  +   R +      +  L+
Sbjct: 420 PHYLVMTATPIPRTISLTLFGDLEVSTLTGTPPGRQKVNTYCVGDERREGWWNFFRKRLA 479

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538
           EG++ Y I P +E+ +    +SV   +  L E         ++HG+MS  +K+ ++  F+
Sbjct: 480 EGRQGYVIAPLVEQSEHIEAQSVTTLYEKLSEGELQGIRCGMLHGKMSSTEKDEILTRFE 539

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++LIAT VIEVGIDV +A+++ IE+ E FGLAQLHQLRGRV RG+    C +   P
Sbjct: 540 AGKLQVLIATPVIEVGIDVPNATLMTIEDGERFGLAQLHQLRGRVTRGQHPGFCCVFAQP 599

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             ++ S  RL+    + DGF +AE D + R  G++LG KQ G+P   +A       +L  
Sbjct: 600 S-TEESQQRLAAFTQSTDGFELAEIDFRLRGPGDLLGTKQHGLPPLRMADLVRDREILLK 658

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR DA+ +L + P+L +     +R ++ L +Y +       G
Sbjct: 659 ARVDAQQMLLESPELATQELAKLRRMV-LVRYGKTLDLGSVG 699


>gi|170017653|ref|YP_001728572.1| ATP-dependent DNA helicase RecG [Leuconostoc citreum KM20]
 gi|169804510|gb|ACA83128.1| ATP-dependent DNA helicase RecG [Leuconostoc citreum KM20]
          Length = 676

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 225/674 (33%), Positives = 353/674 (52%), Gaps = 25/674 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++   GVG K    L +I            DL+ Y P  + D   R   SE  +   VT 
Sbjct: 8   VNVLPGVGPKRLEALHEI------GIFTIEDLVTYFPFRYEDLGERVP-SETLDGDKVTF 60

Query: 73  TGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +S  +   +  K+   +  L      I + FF +    +      G +I V G    
Sbjct: 61  KGIVSTPAVMTRFGKKTQTRFGLLIAHENIRVTFFNQ--PWITQNIIVGEEIAVYGTYNA 118

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIE 190
            K  +  +          + +   ++ +Y     ++    + +I  A S +   +P  + 
Sbjct: 119 AKAAMTGIKMI-------NASVDGLDPIYPATKQIAAKTIRHLIEIAWSEVRGTIPTLVP 171

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           + + QK            +H P    D       R   A++E    Q+ L L++   +  
Sbjct: 172 ETIRQKYRLLDRNTQIENMHFP---VDMAAAKAGRRSAAFEEFFIFQMRLQLLKLADQNF 228

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            G  I+ +        + +PF  T +Q+  I++ILQD  +   M R+LQGDVGSGKT+VA
Sbjct: 229 AGESIDYDETALVNFEQALPFELTAAQQKVIQEILQDQKRPRHMNRLLQGDVGSGKTVVA 288

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRKAL 368
            + M AAV AG QA IMAP  ILAQQH   + +   N  +   VE++T  +  A RR  L
Sbjct: 289 AMTMYAAVTAGCQAAIMAPTEILAQQHAMNLAQLFDNAGVNVRVELLTSGLKVAARRHLL 348

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E + +G   I++GTHAL Q  + ++ L L ++DEQHRFGV QR KL +    P +L MTA
Sbjct: 349 EDLENGTIDILVGTHALLQPDVAFHHLGLAVIDEQHRFGVNQRAKLRENGVNPDILAMTA 408

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++DIS I + P+GRK I+T  +  N++D  ++ +K  +  G +AY +
Sbjct: 409 TPIPRTLSITAYGEMDISVIDQLPSGRKTIQTKRLRHNQLDTALDFVKQQIDLGAQAYIV 468

Query: 489 CPQIEEKKESNFRSVVERFNSLH-EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            P IEE +  + ++    + ++  E     I ++HGR+S+ +K+ +M+ FK    ++L+A
Sbjct: 469 TPLIEESESLDVQNATAMYEAMQLELPQYQIGLLHGRLSNDEKKQLMEDFKANRIQILVA 528

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG+DV +AS+++I +A+ FGLAQLHQLRGRVGRG+  S  IL+  P  +     R
Sbjct: 529 TTVIEVGVDVPNASVMLILDADRFGLAQLHQLRGRVGRGKRQSYTILVADPK-TDYGTAR 587

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L  +  T DGF++A+ DL  R  G+ILG KQSG+P+F +  P     +LEIA+++A  I+
Sbjct: 588 LDAMVETTDGFVLAQRDLDLRGAGDILGTKQSGVPEFNVGDPVKDLRMLEIAQQEAIAIV 647

Query: 668 TQDPDLTSVRGQSI 681
           +      +   Q++
Sbjct: 648 SDKTWDQAPANQAL 661


>gi|238764306|ref|ZP_04625257.1| ATP-dependent DNA helicase recG [Yersinia kristensenii ATCC 33638]
 gi|238697457|gb|EEP90223.1| ATP-dependent DNA helicase recG [Yersinia kristensenii ATCC 33638]
          Length = 638

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 243/642 (37%), Positives = 365/642 (56%), Gaps = 20/642 (3%)

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               VT+ G + + S     +RR     ++DG+G +TL FF     M KN    G+ +  
Sbjct: 3   PGLSVTVEGEVLR-SDISFGRRRMMTCQISDGSGVLTLRFFNFNAAM-KNSLSPGKHVIA 60

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            G+ K+      ++HP Y  H           +  VY    G+     +K+I +AL+ L 
Sbjct: 61  YGEAKRGNTGPEIIHPEYRVHGENIGVELQESLTPVYPTTEGIRQATLRKLIDQALAMLD 120

Query: 184 --VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA---KDFE-WTSPARERLAYDELLAGQ 237
             V+ E +  +L   +S  S+ EA + +H+P       D E    PA+ RL  +ELLA  
Sbjct: 121 SSVIAELLPIEL--SRSLISLPEAIHTLHSPPADIQLADLEQGKHPAQRRLIMEELLAHN 178

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +++L +R   +    + +  E ++ Q+ L  +PF+PT +Q+  + +I QDM+    M+R+
Sbjct: 179 LSMLAVRAGAQSYRALSLLPEEQLKQRFLAALPFTPTHAQQRVVAEIEQDMTHDFPMMRL 238

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    +++ +   + V  + G
Sbjct: 239 IQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANTFRQWLEPLGLQVGWLAG 298

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                 R    E +A GQ  +++GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +K
Sbjct: 299 KQKGKARLAQQEAVASGQVSMVVGTHAMFQEQVQFSGLALVIIDEQHRFGVHQRLALWEK 358

Query: 418 AT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  +VI+
Sbjct: 359 GEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDVIQ 418

Query: 474 RLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531
           R+K   L EG++AYW+C  IEE +    ++       L        + ++HGRM   +K+
Sbjct: 419 RVKNACLEEGRQAYWVCTLIEESELLEAQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQ 478

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           +VM +FK G  +LL+ATTVIEVG+DV +AS++II+N E  GLAQLHQLRGRVGRG   S 
Sbjct: 479 AVMLAFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASH 538

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C+LLY  PLSK +  RL VL+++ DGF+IA+ DL+ R  GE+LG +Q+G  +F +A    
Sbjct: 539 CVLLYKTPLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVADLLR 598

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +++   ++ A+H+  Q P+    +    R L    +Y  A
Sbjct: 599 DQAMIPEVQRVARHLHQQYPE--HAQALIERWLPERTRYTNA 638


>gi|86158152|ref|YP_464937.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774663|gb|ABC81500.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 772

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 234/678 (34%), Positives = 354/678 (52%), Gaps = 12/678 (1%)

Query: 33  CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-K 91
                       L   P ++ DR    +ISE+      T+ G ++     +++  +P  K
Sbjct: 97  LEERGRETVEAALELWPRAYQDRTALRRISELRVGDEATVLGTVAHVRIQRMRSGKPLLK 156

Query: 92  ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN-RIIMVHPHYIFHNSQD 150
           + + +G   + L+FF      LK  F  G  +  +GK+ +    R  M  P      + D
Sbjct: 157 VGVQEGGSALELVFFNPPPWRLKQ-FAAGESLLCSGKVTEGFGARRQMSQPEVEKVQAGD 215

Query: 151 -VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNI 208
             NF  I  VY  P        +K++   +  L P   + +  DL  ++     AEA   
Sbjct: 216 SANFGRIVPVYPGPADYQHPALRKLMKRLVDELVPAAVDDLPADLRARRELVGRAEALRE 275

Query: 209 IHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
            H P    D     E  +PA  RL ++EL   Q+AL + R+  + E GI  +       +
Sbjct: 276 AHFPPPGTDPLRAAERVTPAFRRLVFEELFFLQLALAMRRRGVRAEAGIAFDASPAALAR 335

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
            +  +PF  T +QE A+ +I +DM++   M R+LQGDVGSGKT VA  AM  AV +G QA
Sbjct: 336 AVEPLPFRLTGAQERALAEIARDMAEPEPMNRLLQGDVGSGKTAVAFAAMMLAVRSGWQA 395

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +M P  ILA QH   + ++ +   + V ++  +     +R+A   +A G+A I +GTHA
Sbjct: 396 ALMVPTEILAGQHARTLSRWLEGRGVEVALVGASARGKGQREARAAVAEGRARIAVGTHA 455

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L + ++ + +L LV+VDEQHRFGV QR  L  K   P VL+MTATPIPRTL L   GD+D
Sbjct: 456 LLEQAVGFERLGLVVVDEQHRFGVMQRASLISKGRRPDVLVMTATPIPRTLALAFYGDLD 515

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            SKI E P GR P+ T +   ++        +  L  G++ Y + P +EE ++++     
Sbjct: 516 QSKIGELPPGRTPVTTRLFGDSQRKAAYALARGELEAGRQVYVVYPLVEESEKTDLADAT 575

Query: 505 ERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
                L + F    I ++HGRM   +K+ VMD F+ G  ++L+ATTVIEVG+DV +AS++
Sbjct: 576 TGATELAKVFPGHEIGLLHGRMKPDEKQRVMDRFRAGELQVLVATTVIEVGVDVPNASVM 635

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH-PPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+E+AE FGL+QLHQLRGRVGRG   S C+LL H       +  RL  ++ T+DGF IA 
Sbjct: 636 IVEHAERFGLSQLHQLRGRVGRGAAKSFCLLLAHFRRAGDEARERLRAMEETQDGFEIAR 695

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
            DL+ R  GE+LG +QSG     +A     +++LE AR++A  ++ +DPDL      + R
Sbjct: 696 VDLRIRGPGELLGTRQSGQKLLDVADLYRDEAILEEAREEAFGLVERDPDLARPEHAAAR 755

Query: 683 ILLYLYQYNEAFQFIRAG 700
             L   ++       + G
Sbjct: 756 EALAG-RWAGRLSLAQVG 772


>gi|225027125|ref|ZP_03716317.1| hypothetical protein EUBHAL_01381 [Eubacterium hallii DSM 3353]
 gi|224955589|gb|EEG36798.1| hypothetical protein EUBHAL_01381 [Eubacterium hallii DSM 3353]
          Length = 682

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 214/661 (32%), Positives = 347/661 (52%), Gaps = 16/661 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+   +G+G+K    L+K+      +      L+ ++P  +        ISEI   +  +
Sbjct: 13  PVREIKGIGEKTEKLLAKL------DIETVDQLVHHYPRCYTTYPEPISISEIKTGQRCS 66

Query: 72  ITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I   I+     +  ++      L+ D +G++ + +F      L+N   +G +   TG   
Sbjct: 67  IEAEIASPIHLKTVRKLKLCTGLIADVSGQLFVRWFN--MPYLRNTLKQGEQWIFTGTPI 124

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
               R+++  P Y             + +Y L TGLS    +K    A        E++ 
Sbjct: 125 YKDGRLMLEQPEYCKREKYLQLMETFQPIYPLTTGLSNKTVQKAQAAAFEMYRE-EEYLP 183

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           + +        +  A   +H P      E    A++R+ +DE      AL L++ + ++ 
Sbjct: 184 ETVRNYYDLEPVNTALREVHFPTGT---EHLMEAKKRIIFDEFFRFFSALELVKDREEQA 240

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
           +   I    +  ++ + N+P+  T +Q+  + +I QD S    M R+LQGDVGSGKT+VA
Sbjct: 241 LNHYIIPMEEPVKRFVENLPYPLTGAQKKVLNEIRQDFSDTMAMNRLLQGDVGSGKTIVA 300

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           + AM AAV AG QA +MAP  +LA+QHY+   K      I V ++TG+     +R+    
Sbjct: 301 MTAMYAAVLAGYQAALMAPTEVLAEQHYQNFVKLLSPLGITVALLTGSTKAKEKREIKAA 360

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
            A G+  I+IGTHA+ QD + +  L  ++ DEQHRFGV+QR    +K   PHVL+M+ATP
Sbjct: 361 CASGEIQILIGTHAVIQDDVAFDNLAFIVTDEQHRFGVKQRDAFMKKGKDPHVLVMSATP 420

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +    D+D+S + E PA R PIK  ++  +      E ++  ++ G +AY ICP
Sbjct: 421 IPRTLGIILYRDLDVSIMNEMPASRLPIKNSVVGTSYRPAAWEFIRKQVALGHQAYVICP 480

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            IEE ++ +  +V E    L +    SI +  ++G M   +K  +M+ F     ++L++T
Sbjct: 481 MIEENEKMDLENVEEYARMLSQALPPSITVEALNGHMRPAEKNDIMERFSKNEIQILVST 540

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TV+EVGIDV +A++++IENAE FGLAQLHQLRGRVGRG+  S C+ +      + +  RL
Sbjct: 541 TVVEVGIDVPNATVMLIENAERFGLAQLHQLRGRVGRGKAQSYCVFISGSEK-EEAMERL 599

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           S++ ++ DGF IA EDLK R  GE  G+KQSG   F +     +  +L++A +   ++  
Sbjct: 600 SIIGHSNDGFEIANEDLKLRGPGEFFGVKQSGTMNFALGDIYSNADILKMASEAVDYLKK 659

Query: 669 Q 669
           +
Sbjct: 660 E 660


>gi|325283038|ref|YP_004255579.1| ATP-dependent DNA helicase RecG [Deinococcus proteolyticus MRP]
 gi|324314847|gb|ADY25962.1| ATP-dependent DNA helicase RecG [Deinococcus proteolyticus MRP]
          Length = 786

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 236/697 (33%), Positives = 372/697 (53%), Gaps = 27/697 (3%)

Query: 8   PLFAPLSTF---RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           P+ AP+      RG G++    L            +  DLL Y+P    DR   P +  +
Sbjct: 109 PIDAPIERLDSGRG-GERKLKSL---------GLHQLRDLLHYYPHRHEDRRALPSLDHV 158

Query: 65  SEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            E + VT+ G +        + R    +  L  G G +   +F +    ++    EG ++
Sbjct: 159 EEGQKVTVQGVVVSRFKRTPKPRMTILEATLETGGGRVKATWFNQ--PWMERQLREGARV 216

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
            VTG++K+      +   H    +S +  ++   I  VY    G+S +  ++    AL  
Sbjct: 217 IVTGRVKRFGRTAQLAAEHLESLDSAEGSLSTGRIVGVYDAKEGISQEFLRRAAWRALQA 276

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
            P L +++     ++     +A+A   IH P    D    S A  RL +DE L  ++ +L
Sbjct: 277 AP-LDDYLPAHWRREYGLTPLADALQGIHFP---ADEGQLSRAMARLRFDEYLFLELRML 332

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L  ++   +         +   +   N+PF+ T +Q   + +I+++M    +M R++QGD
Sbjct: 333 LQGEEAVLQGKR-FEAHPEDIDRFEGNLPFNFTGAQRRVLGEIVEEMRSDRQMARLVQGD 391

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT VA  A+  AV  G Q  +MAP  ILA+QHY  + KY +   + V ++ G M  
Sbjct: 392 VGSGKTAVAACALYLAVRDGYQGALMAPTEILARQHYANLCKYLEPLDVRVGLLIGAMTP 451

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +     RIA G+  I++GT AL Q+++Q+  L L ++DE+HRFGV QR KL   A+ P
Sbjct: 452 KAKLDMQGRIALGEVDIVVGTQALIQENVQWDNLGLAVIDEEHRFGVMQRRKLL--ASRP 509

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+M+ATPIPR+L LT+ GD+++S I E P GR PI+T +I      +    +   + +
Sbjct: 510 DVLVMSATPIPRSLALTAYGDLELSVIDELPPGRTPIETKLIQDGYRAQAYGFVMGQIRQ 569

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNG 540
           G++AY +   IEE +     +  E   +L E    + I ++HG+M+  +K+ +M SF+  
Sbjct: 570 GRQAYVVTALIEENENLELLAATELAENLAEMLPEARIGLLHGKMTAAEKDDIMASFRRH 629

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              LL++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   S C+L+    +
Sbjct: 630 DFDLLVSTTVIEVGVDVPNATVMVIENAERFGLSQLHQLRGRVGRGSLQSYCVLIAG-EM 688

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           SK +  RL +++ + DGF+IAE DLK R  GEI G +QSG+P   +        ++E AR
Sbjct: 689 SKKTEQRLRIIEGSTDGFVIAEADLKLRGPGEIRGTRQSGIPDLRLGDLANDAEVIEQAR 748

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
           + AKHIL+ DP L   R Q +R  L     + AF+ +
Sbjct: 749 QLAKHILSNDPRLEHPRLQYLRSELQNRSQSVAFREV 785


>gi|312872411|ref|ZP_07732480.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 2062A-h1]
 gi|311091993|gb|EFQ50368.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 2062A-h1]
          Length = 673

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 220/694 (31%), Positives = 357/694 (51%), Gaps = 33/694 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  LS++            DLLFY P  + D      ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALSQLK------IKTIYDLLFYFPRRY-DSLETFPLNELK 58

Query: 66  EERIVTITGYISQHSSFQLQK----RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I              R  +K+ ++     I + FF +    LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDHD--IIMVNFFNQ--PWLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS- 180
            I + GK       +       I    +       E VYSL + +        I +A+  
Sbjct: 115 DIAIYGKYVLASQTLSAYK---IVLKEE-----GFEPVYSLNSHIKQKKLVSFISQAIEK 166

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-A 239
            LP LPE I + L  K     +      +H P   KD +    A+    + E    Q+  
Sbjct: 167 YLPQLPEVIPQYLRDKYKLLDVKSMIIQMHQP---KDLQQVKIAQRTAIFLEFFVFQLQL 223

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   RM R+LQ
Sbjct: 224 SQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKRMNRLLQ 283

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   ++T + 
Sbjct: 284 GDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSST 343

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L  K  
Sbjct: 344 KLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGK 403

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++  +   L
Sbjct: 404 MVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQL 463

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
            +G + Y + P I E  + + ++    +  +  +F +  +A++HG+M    K  +MD+F 
Sbjct: 464 EQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSDIMDAFI 523

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S CI +  P
Sbjct: 524 HGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYCIFVSDP 583

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             + ++  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     + ++   
Sbjct: 584 K-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINNYNIFTT 642

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           A+K++K ++ Q+P+L       +++   L +Y++
Sbjct: 643 AQKESKILVHQNPELVGEEYDFLKL---LMEYDD 673


>gi|33865627|ref|NP_897186.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 8102]
 gi|33632797|emb|CAE07608.1| ATP-dependent DNA helicase [Synechococcus sp. WH 8102]
          Length = 836

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 244/704 (34%), Positives = 385/704 (54%), Gaps = 33/704 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PL+  +GVG K +  L+ I            DLL ++P   +D   R +I  +    
Sbjct: 137 LDSPLTQLQGVGPKLAGRLAAI------GLLLVRDLLKHYPRDHVDYATRRRIEALVVGE 190

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFF-----YRKTEMLK---NVF 117
             TI   I + + F   +     IL   L D TG I +  F     +     LK    ++
Sbjct: 191 TATIVATIRRCNGFVSPRNPNLSILELQLQDPTGRIKVTRFLAGKRFSSPAYLKGQQRLY 250

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-----NFPLIEAVYSLPTGLSVDLFK 172
            +G  + V+G IK+         P      S +      N   +  VY L  G++ D F+
Sbjct: 251 PQGATVAVSGLIKEGPYGATFQDPLIEVLESSNAEVRSRNIGRLMPVYGLTEGVAADRFR 310

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           ++I + L      P+ + +   +  S  S+ EAF  +H P      +     R RL +DE
Sbjct: 311 QLIDQVLPLARAWPDPLNQTERRDWSLVSLPEAFQGLHAPDDPSQLDQA---RRRLVFDE 367

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKI---AQKILRNIPFSPTKSQESAIKDILQDMS 289
            L  Q+ LL  R+   +     + +  +      K L ++PF+ T +QE    +I  D+ 
Sbjct: 368 FLLLQLGLLRRRRTLSQRPCPQLELIRRGDGLVGKFLASLPFAFTAAQERVFGEIEADLQ 427

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           +   M R++QGDVGSGKT+VA+ A+ + + +G Q  +MAP  +LA+QH+  + ++     
Sbjct: 428 RSQPMARLVQGDVGSGKTVVAIAALLSTISSGWQGALMAPTEVLAEQHHRNLCRWLPPLH 487

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + VE++TG  P+  RR+ L+ +A+G   +++GTHAL +D + + +L LV+VDEQHRFGV 
Sbjct: 488 VTVELLTGATPKTKRRQLLDDLANGSLKVLVGTHALLEDPVVFSRLGLVVVDEQHRFGVH 547

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PI+T ++   +  
Sbjct: 548 QRDRLLNKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIRTAMLTAAQRS 607

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSD 527
           +  E ++  ++ G++AY + P +EE ++   RS VE    L        ++ ++HGR++ 
Sbjct: 608 QAYELIREEVARGQRAYVVLPLVEESEKLELRSAVEVHAELASEVFPELTLGLLHGRLNS 667

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            DK+SV+  F +G  ++L++TTV+EVG+DV +AS+++I++AE FGLAQLHQLRGRVGRG 
Sbjct: 668 ADKQSVLRDFADGRSQVLVSTTVVEVGVDVPEASVMVIDHAERFGLAQLHQLRGRVGRGA 727

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C LL +   +  +  RL VL  + DGF IAE DL+ R  G++LG +QSG+P   +A
Sbjct: 728 AASHC-LLINGSSNPLARQRLDVLVCSNDGFEIAEMDLRLRGPGQVLGTRQSGLPDLALA 786

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
                 ++LE AR  A+ ++ QDPDL++   Q +  LL   Q  
Sbjct: 787 SLADDGAVLEDARAAAQQLMEQDPDLSA--HQVLLALLEEQQRR 828


>gi|227824767|ref|ZP_03989599.1| ATP-dependent DNA helicase recG [Acidaminococcus sp. D21]
 gi|226905266|gb|EEH91184.1| ATP-dependent DNA helicase recG [Acidaminococcus sp. D21]
          Length = 688

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 238/670 (35%), Positives = 368/670 (54%), Gaps = 21/670 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEIS-EER 68
           P+S+ +G+G K ++    +            DLL + P    ++D  +   I E++ +  
Sbjct: 7   PVSSLKGIGPKKAIEFEGL------GIVTIGDLLNHFPRQGCYLDYSHVKTIRELTLDGS 60

Query: 69  IVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           +    G I++    +  +   Y  ++++DGT    +  F  +   ++     G  + V G
Sbjct: 61  MQLFRGQIARIIKRRSARNMRYASVVVSDGTAFAEIFLFGAQVYAVR-YLENGDDVLVIG 119

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLP 186
           K+   +    +          +    P I   Y+L   L+    +  + +AL      LP
Sbjct: 120 KVGPGRTAKAVTQAVISKVKDEHPEAPGILPTYALSGSLTQKNVRSAVRQALLLAKHHLP 179

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +   +++KK F S  EA   IH P   +  E     R R  ++EL   Q  LL  R  
Sbjct: 180 ECLPDWIMRKKGFLSRYEALEAIHFPPSLEKMEEA---RRRFIFEELFFIQCGLLHHRAN 236

Query: 247 FKKEI-GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            KK   GI +   G + Q +L ++ F+ T+SQ+ A ++I  DM     M R+LQGDVGSG
Sbjct: 237 IKKRSLGIKMGHCGPLWQSVLDHLGFTLTESQKKAWQEINDDMESPEPMNRLLQGDVGSG 296

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT VA++A+A A E G Q  +MAP  ILA+QHY+ ++K  +   I   ++TG++ QA RR
Sbjct: 297 KTAVAMLALAKAAENGYQGCLMAPTEILAEQHYKEMQKVLEPLGIHTALLTGSLGQAARR 356

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVL 424
           + LE +A G    ++GT+AL QD++ ++ L L I DEQHRFGV+QR +L+ K++  PHVL
Sbjct: 357 EVLEGLADGTIKAVVGTYALIQDAVTFHSLALAITDEQHRFGVEQRSRLSGKSSYTPHVL 416

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL LT  GD+D+S +   P GRKPIKT+     +  +V   L   + EG +
Sbjct: 417 VMTATPIPRTLALTVYGDLDVSLMKGLPPGRKPIKTLCYTDEKRADVYAGLIHQVKEGHQ 476

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTC 542
           AY + P IE     + +S  + +  L + F   I   ++HGR+   +K++VM  F +G  
Sbjct: 477 AYIVAPLIEGSDTVDAKSATDLYEELTQTFLKGIPCGLLHGRLKAEEKDAVMADFVSGKT 536

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K+LIATTVIEVG++V +A+++IIE A+ FGLAQ+HQLRGRVGRG   S C+LL       
Sbjct: 537 KVLIATTVIEVGVNVPNATLMIIEGADRFGLAQMHQLRGRVGRGSSQSYCVLLTGSNQ-P 595

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL ++++  DGFL+AE+D++ R  G++ G++Q G+P   IA        L  AR+ 
Sbjct: 596 QTLERLQIMRSCSDGFLLAEKDMELRGAGQLFGVRQHGLPDLYIADILRDTDTLVEAREY 655

Query: 663 AKHILTQDPD 672
           AK I+  DP 
Sbjct: 656 AKRIMA-DPQ 664


>gi|219669851|ref|YP_002460286.1| ATP-dependent DNA helicase RecG [Desulfitobacterium hafniense
           DCB-2]
 gi|219540111|gb|ACL21850.1| ATP-dependent DNA helicase RecG [Desulfitobacterium hafniense
           DCB-2]
          Length = 805

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 241/666 (36%), Positives = 369/666 (55%), Gaps = 30/666 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            L   +GVG + +  L++I            DL FY P  + DR     I E+ +  + +
Sbjct: 144 SLQFLKGVGPERAKLLAQI------GLHTVKDLFFYFPRRYEDRS-LQSIGELKDGELAS 196

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +         K +  K+ +      +  ++F +    +   +  G  + VTGK++ 
Sbjct: 197 VAGKVVAGQ-IARGKLKVVKLSIEQDGRLVYAVWFNQ--TYILKQYPVGTSVIVTGKVR- 252

Query: 132 LKNRIIMVHPHYI---FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PE 187
                    P         +       I  VYS    LS  + + I+   L + P L PE
Sbjct: 253 ----WQQRVPEIQATDIQKAGAAQPAAILPVYSETARLSSKVIRTIVQGVLGQAPELFPE 308

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
           ++  +  + K +   A+A+  IH PR    F     ARERL ++E+L  Q+++  +R   
Sbjct: 309 FLPPE--EGKGWVPRAQAYQEIHFPRT---FHSLGQARERLVFEEVLFLQLSVARLRSGV 363

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++E    +     + Q+ L ++PF  T++Q+  I++I +DM+    M R++QGDVGSGKT
Sbjct: 364 QRENSPQLKSGESLVQRFLASLPFELTQAQKRVIQEIFRDMANTQGMARLVQGDVGSGKT 423

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A+  AV +G Q  +MAP  ILA QHY+ +    +   + V  + G+  ++ R K 
Sbjct: 424 AVAMAALLMAVGSGYQGAMMAPTEILALQHYQSLAAAFKPLGLHVVCLLGSQTKSERDKI 483

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  IA+G+AH+I+GTHAL Q+S+Q++ L L I DEQHRFGV+QR  L  K   PHVL++T
Sbjct: 484 LTEIAYGKAHVIVGTHALIQESVQFHSLGLAITDEQHRFGVKQRTSLQTKGENPHVLVLT 543

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL LT  GD+ +S + E P GRKPI T  +       + + ++  + +G++ Y 
Sbjct: 544 ATPIPRTLALTLYGDLQLSALDEMPQGRKPIMTRKLTERGRPSLEKFMEEQMEKGRQIYV 603

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +CP +EE +  +  S  ERF SL E F +  ++++HGRM  + KE +M +F+ G   +L+
Sbjct: 604 VCPLVEESENVDLISATERFQSLLERFPNRRVSLLHGRMKGVQKEEIMTAFQKGEVDILV 663

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A++++IE AE FGLAQLHQLRGRVGRG E S C LL     S     
Sbjct: 664 STTVVEVGVNVPNATVMVIEGAERFGLAQLHQLRGRVGRGSEQSYCFLLSDAKNS----R 719

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL VL  T+DGF IAEEDLK R  GE+LG +Q G+ +  +A       L+E A + A+ +
Sbjct: 720 RLEVLCETQDGFKIAEEDLKIRGAGELLGTRQHGVMELRLADLSRDGRLVEQAYQLAQKV 779

Query: 667 LTQDPD 672
           LT  PD
Sbjct: 780 LTH-PD 784


>gi|319778250|ref|YP_004129163.1| ATP-dependent DNA helicase RecG [Taylorella equigenitalis MCE9]
 gi|317108274|gb|ADU91020.1| ATP-dependent DNA helicase RecG [Taylorella equigenitalis MCE9]
          Length = 680

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 233/655 (35%), Positives = 353/655 (53%), Gaps = 17/655 (2%)

Query: 32  NCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYK 91
                   R ID   + P  + D      IS+   +      G +          ++   
Sbjct: 12  KIAKLGLIRPIDFALWIPLRYEDETVITPISQAQPDLKQQFEGRVYDV-DISYGNKKTLT 70

Query: 92  ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL-KNRIIMVHPHYIFHNSQD 150
             L+D +G ++L + +    ++      G  + V G +K   K    ++HP        D
Sbjct: 71  ATLSDDSGTLSLRWIHFYPNLV-GYLKSGPVVRVKGLVKGSPKWGCTIIHPEIKKIT--D 127

Query: 151 VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFN 207
                +  +YS   GL+ D+ +K I   L          + +   +L K S P+  EA  
Sbjct: 128 PLPANLTPIYSTTAGLTQDVLRKKIKLNLELAKTNGDFRDTLPLQILNKYSLPAFEEAIF 187

Query: 208 IIHNPR--KAKDFE-WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQ 263
            +HNP+  +AK  E  T PA  RL +DELLA Q+ L L R + ++   IP+ + +  + +
Sbjct: 188 TLHNPKLSEAKSIENKTHPAWHRLVFDELLAQQLTLQLARDKREQLKAIPLELNDRSLFE 247

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            ++       T +Q+  I +I +D+ +   M R+LQGDVGSGKT+VA +A +  +  G Q
Sbjct: 248 GVINEFSLELTGAQKRVISEITEDLKKPKPMNRLLQGDVGSGKTIVAALAASLVISNGYQ 307

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             +MAP  ILA+QHY  + K+     I +  + G++    +    E I    A+ +IGT 
Sbjct: 308 VALMAPTEILAEQHYLKLSKWFNPLGIEIVRLYGSLSAKEKNSVYEAILKSTANFVIGTQ 367

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTS 439
           AL Q+ +++  L L+IVDEQHRFGV QRL L +K       PH L M+ATPIPRTL ++ 
Sbjct: 368 ALIQEKVEFANLGLLIVDEQHRFGVIQRLTLNKKGELGEYIPHQLSMSATPIPRTLAMSY 427

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           L DID+S I E P GR PI T +I   R D+V   ++  + +G +AYW+CP +EE +   
Sbjct: 428 LADIDVSTIDELPPGRTPILTKLIKKERRDQVAFHIRDEVKKGLQAYWVCPLVEESEALQ 487

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            +S V+ +N +        + ++HG++   +K  +M  FK+  C++L+ATTVIEVG+DV 
Sbjct: 488 LQSAVDTYNWIRNLLPDIKVGLVHGQLKSSEKNDIMQKFKDNECQILVATTVIEVGVDVP 547

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +ASI++IE+AE FGLAQLHQLRGRVGRG+  S+CIL+Y  PL+     RL  +  T DGF
Sbjct: 548 NASIMVIEHAERFGLAQLHQLRGRVGRGQNSSTCILIYQEPLTVVGKERLKAMYETTDGF 607

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            IA  DL+ R  GE+LG KQSG+     AQ ++  + LE  R +AK+++   PDL
Sbjct: 608 EIARRDLEIRGPGELLGQKQSGVAMLRFAQIQVDTATLEFVRDEAKNLIRNYPDL 662


>gi|259501525|ref|ZP_05744427.1| DNA helicase RecG [Lactobacillus iners DSM 13335]
 gi|259167043|gb|EEW51538.1| DNA helicase RecG [Lactobacillus iners DSM 13335]
          Length = 673

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 219/694 (31%), Positives = 358/694 (51%), Gaps = 33/694 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  LS++            DLLFY P  + D      ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALSQLK------IKTIYDLLFYFPRRY-DSLETFPLNELK 58

Query: 66  EERIVTITGYISQHSSFQLQK----RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I              R  +K+ ++     I + FF +    LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDHD--IIMVNFFNQ--PWLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS- 180
            I + GK       +       I    +       E VYSL + +        I +A+  
Sbjct: 115 DIAIYGKYVLASQTLSAYK---IVLREE-----GFEPVYSLNSHIKQKKLVSFISQAIEK 166

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-A 239
            LP LPE I + L  K     +      +H P   KD +    A+    + E    Q+  
Sbjct: 167 YLPQLPEVIPQYLRDKYKLLDVKSMIIQMHQP---KDLQQVKVAQRTAIFLEFFVFQLQL 223

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   RM R+LQ
Sbjct: 224 SQLLYANDQKNSGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKRMNRLLQ 283

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   ++T + 
Sbjct: 284 GDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSST 343

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L  K  
Sbjct: 344 KLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGK 403

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++  +   L
Sbjct: 404 MVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQL 463

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
            +G + Y + P I E  + + ++    +  +  +F +  +A++HG+M+   K  +MD+F 
Sbjct: 464 EQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMASSQKSDIMDAFI 523

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S CI +  P
Sbjct: 524 HGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGSTQSYCIFVSDP 583

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             + ++  RL ++   +DGF +A EDLK R EG++ G  QSG+P+F +     + ++   
Sbjct: 584 K-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDLFGQAQSGIPQFKLGDIINNYNIFTT 642

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           A+K++K ++ Q+P+L       +++   L +Y++
Sbjct: 643 AQKESKILVHQNPELVGEEYDFLKL---LMEYDD 673


>gi|317129245|ref|YP_004095527.1| ATP-dependent DNA helicase RecG [Bacillus cellulosilyticus DSM
           2522]
 gi|315474193|gb|ADU30796.1| ATP-dependent DNA helicase RecG [Bacillus cellulosilyticus DSM
           2522]
          Length = 678

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/678 (33%), Positives = 361/678 (53%), Gaps = 18/678 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            P+S   GVG +    L       N        L+ + P  + D   R +++E   E  +
Sbjct: 4   QPVSKIHGVGPRMVEQLE------NMGIETVQQLIEHLPFRYEDHAVR-RVTEAEHEERI 56

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           T+ G +      +   +   ++ +      + L   +     LK     G  IT++GK  
Sbjct: 57  TVRGTVHSEPLLRFYGKNKSRLTVRVLVDGLLLQAVFFNQPYLKRQISLGEVITLSGKFD 116

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWI 189
           + +  +           +++     +E VYS+   L +   +KII +A ++    + E +
Sbjct: 117 RHRLMLSGGT----LKTTENNVNEGLEPVYSIRGNLKITALRKIIQQAFTQFEGQMEEIL 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              LL        AE  + +H P      E    A+ R+ Y+E L  Q+ + L RK+ ++
Sbjct: 173 PSQLLTSYRLMGRAETIHQLHFPTS---IEKLKQAKRRMIYEEFLLFQLKMQLFRKKERE 229

Query: 250 EIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +        +   ++    +PF  T +Q   I +IL+D+  + RM R+LQGDVGSGKT+
Sbjct: 230 AVQGQKKFFSQNVIEEFKTKLPFPLTNAQLRVIDEILKDLQSEYRMNRLLQGDVGSGKTV 289

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA  A+ A ++AG Q  +M P  ILA+QH E +    +   I V+++TG+     RR  L
Sbjct: 290 VAACALFAVIQAGLQGALMVPTEILAEQHKESLVDLLEPFGIKVQLLTGSTKVKERRAIL 349

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +  G+  II+GTHAL Q+ + +  L LVI DEQHRFGV+QR  L +K   P VL MTA
Sbjct: 350 EELREGKIDIILGTHALIQEGVDFKNLGLVITDEQHRFGVEQRRILRKKGIRPDVLFMTA 409

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +++ GD+D+S I E P GR P+ T  +  + +  +I+ +   L+ GK+AY I
Sbjct: 410 TPIPRTLAISAFGDMDVSVIDEMPKGRLPVDTRWVKHDMLPRIIQFMDKQLNVGKQAYVI 469

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           CP IEE ++ + ++ ++    L +      I ++HGR+S  +KESVM+ F      +L++
Sbjct: 470 CPLIEESEKLDVQNAIDVHLQLSQALPQYKIGLMHGRLSSDEKESVMNEFARNKVSVLVS 529

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTV+EVG++V +A++++I +AE FGLAQLHQLRGRVGRG+E S CILL  P  S     R
Sbjct: 530 TTVVEVGVNVPNATLMVIYDAERFGLAQLHQLRGRVGRGKEQSYCILLADPK-SDMGKER 588

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           + ++ +T +GF ++E DL+ R  G+  G KQSG+PKF +A       +LE+AR+DA  ++
Sbjct: 589 MQIMVDTNNGFELSERDLELRGPGDFFGSKQSGLPKFKVADIVEDFKVLEVARQDAVKLV 648

Query: 668 TQDPDLTSVRGQSIRILL 685
                        +R  L
Sbjct: 649 QSKAFWDGEDYALLRDYL 666


>gi|15895013|ref|NP_348362.1| RecG helicase [Clostridium acetobutylicum ATCC 824]
 gi|15024704|gb|AAK79702.1|AE007683_1 RecG helicase [Clostridium acetobutylicum ATCC 824]
 gi|325509150|gb|ADZ20786.1| RecG helicase [Clostridium acetobutylicum EA 2018]
          Length = 678

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 226/664 (34%), Positives = 375/664 (56%), Gaps = 21/664 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +   ++T +GVG K +L L+K            +DLL Y P  + +      I E+ + +
Sbjct: 3   INDDIATLKGVGPKTALKLNK------CGIFTILDLLLYFPRDYENLSLMSNILEVEDGQ 56

Query: 69  IVTITGYISQ-HSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V +     +    F+ + R+   KI+ +DG    + ++F +    +KN F      T+ 
Sbjct: 57  KVIVKCTPLRLEKEFRSKSRKTVTKIIFSDGKTTFSGIWFNQ--PYIKNKFKYNETYTIM 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GKIK+ KN I M +P  I   ++  +   I   Y+L   L    F ++I E L  +  + 
Sbjct: 115 GKIKRTKNEITMNNP--IPVENRSSSDEKIVPKYALSGTLKNTFFIRLIFELLQNIK-ID 171

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + +++K +F S+ E+   IH+PR   +   ++    RL + EL    + +L++++ 
Sbjct: 172 ENMPEWIIKKNAFHSLDESLREIHSPRNMLELREST---RRLKFQELFTYSLKVLMLKEY 228

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            KK        +  ++ + +  ++PF  T++Q   I++IL+D  +   M R++QGDVGSG
Sbjct: 229 IKKNNKGFAFKIAPELIK-LKESLPFKLTEAQNLVIREILKDEKRPQAMNRLVQGDVGSG 287

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VALIA+   ++ G QAV+MAP  ILA+QH+E      +   I +E++TG++   ++R
Sbjct: 288 KTIVALIAIFNVIKNGFQAVLMAPTEILAKQHFESANTLFKEFNIRIELLTGSVTDKNKR 347

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
              E++  G+  +IIGTHAL +D++++  L +V+ DE HRFGV QR +L  K     VL+
Sbjct: 348 IIKEKLKDGEIDLIIGTHALIEDNVEFSNLGIVVTDELHRFGVMQRNRLFNKGNNIDVLV 407

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L   GD+D+S I   P GRK +KT+ I  N   +        +  G++ 
Sbjct: 408 MTATPIPRTLALYLYGDLDVSIIDTLPPGRKEVKTLCIKKNSRQKAYNFALNEIKNGRQI 467

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP +EE ++    SV + +  L   +     I ++HG+M+  +K ++M+ F N    
Sbjct: 468 YVVCPLVEENEKLELTSVEKLYEELKSSYFKGIKIEMLHGKMAPKEKNAIMERFNNKETI 527

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +AS++IIE+A+ FGLAQLHQLRGRVGRG+  S C+L+     +K 
Sbjct: 528 VLVSTTVIEVGVNVPNASVMIIEDAQRFGLAQLHQLRGRVGRGQYQSYCMLVAEMK-NKV 586

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  R+ ++ ++ DGF I+EED K R  GE+ GI+QSG    +++      S+L  A   A
Sbjct: 587 AERRMEIMCSSSDGFYISEEDFKLRGSGEVFGIRQSGEDGLILSDIIQDISILREANSAA 646

Query: 664 KHIL 667
           K ++
Sbjct: 647 KKLI 650


>gi|312874448|ref|ZP_07734478.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 2052A-d]
 gi|311090060|gb|EFQ48474.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF 2052A-d]
          Length = 673

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 220/694 (31%), Positives = 357/694 (51%), Gaps = 33/694 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  LS++            DLLFY P  + D      ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALSQLK------IKTIYDLLFYFPRRY-DSLEIFPLNELK 58

Query: 66  EERIVTITGYISQHSSFQLQK----RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I              R  +K+ ++     I + FF +    LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDHD--IIMVNFFNQ--PWLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS- 180
            I + GK       +       I    +       E VYSL + +        I +A+  
Sbjct: 115 DIAIYGKYVLASQTLSAYK---IVLKEE-----GFEPVYSLNSHIKQKKLVSFINQAIEK 166

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-A 239
            LP LPE I + L  K     +      +H P   KD +    A+    + E    Q+  
Sbjct: 167 YLPQLPEVIPQYLRDKYKLLDVQSMIIQMHQP---KDLQQVKVAQRTAIFLEFFVFQLQL 223

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   RM R+LQ
Sbjct: 224 SQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKRMNRLLQ 283

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   ++T + 
Sbjct: 284 GDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSST 343

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L  K  
Sbjct: 344 KLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGK 403

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++  +   L
Sbjct: 404 MVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQL 463

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
            +G + Y + P I E  + + ++    +  +  +F +  +A++HG+M    K  +MD+F 
Sbjct: 464 EQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSDIMDAFI 523

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S CI +  P
Sbjct: 524 HGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYCIFVSDP 583

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             + ++  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     + ++   
Sbjct: 584 K-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINNYNIFTT 642

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           A+K++K ++ Q+P+L       +++   L +Y++
Sbjct: 643 AQKESKILVHQNPELVGEEYDFLKL---LMEYDD 673


>gi|222109587|ref|YP_002551851.1| ATP-dependent DNA helicase recg [Acidovorax ebreus TPSY]
 gi|221729031|gb|ACM31851.1| ATP-dependent DNA helicase RecG [Acidovorax ebreus TPSY]
          Length = 723

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 233/687 (33%), Positives = 356/687 (51%), Gaps = 50/687 (7%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN 95
               R IDL  + P  + D      I    +   V I   ++  S  Q++ RR   + + 
Sbjct: 29  LGLVRDIDLALHLPLRYEDETRITPIRSARDGDTVQIEATVTA-SEVQMRPRRQLVVTVE 87

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL 155
           DGTG   L FF       K +   G ++ V G+IK       M+HP +    ++      
Sbjct: 88  DGTGSCELRFFSFYPSHQKTM-AVGARLRVRGEIKGGFWGRQMLHPAFR--KAEGDLPAA 144

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ-----------KKSFP---S 201
           +  VY     L     ++ +  AL+R+  LPE +   L             +       S
Sbjct: 145 LTPVYPTVAQLPQAYLRRAVASALTRVE-LPETLPPGLEPPAVPSWVRGNGQNGLLRPWS 203

Query: 202 IAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
           + EA   +H+P          + + PA +RL  +ELLA Q++ L  +++  +     +  
Sbjct: 204 LREALLFLHHPAPDVALATLQDHSHPAWQRLKAEELLAQQLSQLTAKRERARLRAPALRP 263

Query: 258 E-----GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           +       + +++L  +PFS T +Q    ++I +D+++   M R+LQGDVGSGKT+VA +
Sbjct: 264 QAQAGSTPLHEQLLGVLPFSLTAAQRRVGEEIARDLARPVPMHRLLQGDVGSGKTVVAAL 323

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT----QIIVEIITGNMPQAHRRKAL 368
           A    ++AG Q  +MAP  ILA+QH+  +  + Q         V  + G   +  R + L
Sbjct: 324 AATVCMDAGWQCALMAPTEILAEQHFAKLIGWLQPLLAARGRQVAWLVGGQKKKERAEML 383

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVL 424
            RI  G+A +++GTHA+ Q+ +++  L L ++DEQHRFGV QRL L +K       PH+L
Sbjct: 384 ARIESGEAALVVGTHAVIQEQVRFKNLALAVIDEQHRFGVAQRLALRKKLQHAGMEPHLL 443

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPRTL ++   D+D+S I E P GR PI T +I  +R DEV+ER+   ++ G++
Sbjct: 444 MMSATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVVERIGAQVAAGRQ 503

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---------IAIIHGRMSDIDKESVMD 535
            YW+CP IEE +  +  +       L E              + ++H RM   +K++VMD
Sbjct: 504 VYWVCPLIEESEALDLSNATATHAELSEALQGDAAHGRAPVMVGLLHSRMPAAEKKAVMD 563

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LL
Sbjct: 564 LFKGGQMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLL 623

Query: 596 YHP----PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           Y       L + +  RL  +  T DGF IA  DL+ R  GE LG +QSG      A    
Sbjct: 624 YSTGDSGRLGETARDRLKAMAETTDGFEIARRDLEIRGPGEFLGARQSGDALLRFADLAT 683

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRG 678
              LLE AR+ A  +L + P L + R 
Sbjct: 684 DTLLLEWARETAPQMLDRHP-LLAERH 709


>gi|325911773|ref|ZP_08174177.1| ATP-dependent DNA helicase RecG [Lactobacillus iners UPII 143-D]
 gi|325476279|gb|EGC79441.1| ATP-dependent DNA helicase RecG [Lactobacillus iners UPII 143-D]
          Length = 673

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 220/694 (31%), Positives = 358/694 (51%), Gaps = 33/694 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  LS++            DLLFY P  + D      ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALSQLK------IKTIYDLLFYFPRRY-DSLEIFPLNELK 58

Query: 66  EERIVTITGYISQHSSFQLQK----RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I              R  +K+ ++     I + FF +    LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDHD--IIMVNFFNQ--PWLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS- 180
            I + GK       +       I    +       E VYSL + +        I +A+  
Sbjct: 115 DIAIYGKYVLASQTLSAYK---IVLKEE-----GFEPVYSLNSHIKQKKLVSFINQAIEK 166

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-A 239
            LP LPE I + L  K     +      +H P   KD +    A+    + E    Q+  
Sbjct: 167 YLPQLPEVIPQYLRDKYKLLDVQSMIIQMHQP---KDLQQVKVAQRTAIFLEFFVFQLQL 223

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   RM R+LQ
Sbjct: 224 SQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKRMNRLLQ 283

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   ++T + 
Sbjct: 284 GDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSST 343

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L  K  
Sbjct: 344 KLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGK 403

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++  +   L
Sbjct: 404 MVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQL 463

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
            +G + Y + P I E  + + ++    +  +  +F +  +A++HG+M+   K  +MD+F 
Sbjct: 464 EQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMASSQKSDIMDAFI 523

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S CI +  P
Sbjct: 524 HGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYCIFVSDP 583

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             + ++  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     + ++   
Sbjct: 584 K-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINNYNIFTT 642

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           A+K++K ++ Q+P+L       +++   L +Y++
Sbjct: 643 AQKESKILVHQNPELVGEEYDFLKL---LMEYDD 673


>gi|325972732|ref|YP_004248923.1| ATP-dependent DNA helicase RecG [Spirochaeta sp. Buddy]
 gi|324027970|gb|ADY14729.1| ATP-dependent DNA helicase RecG [Spirochaeta sp. Buddy]
          Length = 695

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 232/689 (33%), Positives = 357/689 (51%), Gaps = 25/689 (3%)

Query: 9   LFAPLSTFRGVGKK-YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           L  P++   GVG    + +L           + + DLL   P ++ DR     +  + + 
Sbjct: 7   LKQPITELSGVGPAAKAAYLE-------LGISTYSDLLLLSPRTWEDRSEVHPLGGLEDA 59

Query: 68  RIVTITGYISQHSSFQLQ--KRRPYKILLND----GTGEITLLFFYRKTEMLKNVFFEGR 121
           ++      +  HS F L+  K+R  KIL+ D    G G ++LL F R    L+     GR
Sbjct: 60  QMANTLVEVLSHSYFGLKAGKKRTLKILVRDVSGLGDGRLSLLCFGRN--FLEKTIKVGR 117

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVE 177
              + G + + +  +       ++  ++D +FP     I  +Y L   LS  L +  +  
Sbjct: 118 IYYLYGSVNRNRGELQCSQ-FELYPATEDGDFPKQFGQILPIYPLRGSLSQRLIRTNMKA 176

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
            L+ +    + +   + +     S  +A    H P      E    A   LA  EL   Q
Sbjct: 177 VLASVDTFEDEMTASMRENYHLLSTDQAIRAYHFPPS---VEVLHQAHRTLALTELFYLQ 233

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +     +   ++      ++  K+  K +  +PFS T  Q +++ +I QD+     M R+
Sbjct: 234 LVARRHKSLQQRSTRTGPSIPTKLELKCIETLPFSLTGDQITSLTEIRQDLDSDMPMNRL 293

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVA I+    +   GQ   MAP  +LA+QH E      +   I +  +TG
Sbjct: 294 LQGDVGSGKTLVAWISALHVLSQKGQVAFMAPTELLARQHAESGAALLEKLGIRLAFLTG 353

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++    RR  LE I  G+  IIIGTHALF   + +  L  VI+DEQHRFGV+QRL L +K
Sbjct: 354 SVKNKERRLLLEAIKGGEVDIIIGTHALFSAEVAFRNLRYVIIDEQHRFGVEQRLALLEK 413

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
           A  P +LLMTATPIPRTL LT  G++++S +   PAGRKP+ T ++       + + + V
Sbjct: 414 AQVPDLLLMTATPIPRTLSLTVFGNLNVSTLRTMPAGRKPVITHLVNEQSRKRMYQAVGV 473

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH-EHFTSSIAIIHGRMSDIDKESVMDS 536
               G +AY++ P+I++  ES+ R V   +  L  E+ T   A+IH ++ + +K  ++  
Sbjct: 474 EFQRGHQAYFVYPRIDDSGESDLRDVNNMYEFLKNEYPTVPSALIHSKLDEEEKVHILKE 533

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           ++ G    L++T+V+EVGID+ +A+ ++IE+A+ FGL+ LHQLRGRVGR    S C L++
Sbjct: 534 YQGGRIAYLVSTSVVEVGIDIPNATCMVIEHADRFGLSALHQLRGRVGRSVLQSYCFLVF 593

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
              L+  +  RL V+K + DGF IAE+DL  R  GE+ G +QSG  K + A       L+
Sbjct: 594 GDELTDEAKQRLKVMKESNDGFYIAEQDLLIRGPGELTGTRQSGYLKLIYASLTDDLPLI 653

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILL 685
           EIAR +A HIL  DP L  V  + IR  L
Sbjct: 654 EIARNEADHILESDPGLLQVEHEPIRATL 682


>gi|187478413|ref|YP_786437.1| ATP-dependent DNA helicase RecG [Bordetella avium 197N]
 gi|115422999|emb|CAJ49529.1| ATP-dependent DNA helicase [Bordetella avium 197N]
          Length = 684

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 230/655 (35%), Positives = 349/655 (53%), Gaps = 19/655 (2%)

Query: 30  IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP 89
                N       D + + P  + D      I+E        + G I + S    + RR 
Sbjct: 14  ERRLRNLGLVEPEDFVLHLPLRYEDETRIIPIAEARPGFPAQVEGEILR-SDVLYRPRRQ 72

Query: 90  YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ 149
              ++ D +GE+ L +        K     GR++   G ++       MVHP     N+ 
Sbjct: 73  LTAVIADDSGELHLRWLNFYPSQQKQ-LNSGRRLRARGDVRGGMFGREMVHP--RMSNAD 129

Query: 150 DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209
                 +  VY    GL+  + ++ + +AL+ L  L + + + + Q+       EA  ++
Sbjct: 130 GALPTALTPVYPSTDGLTQPVLRRAVTQALAGL-ALDDTLPEAVRQRYGLLPFNEAVRLL 188

Query: 210 HNPRK---AKDF-EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA--- 262
           H P      +D  E T PA  R+ +DELLA Q++L   R     +    +  + K A   
Sbjct: 189 HAPPPGIAERDLSERTHPAWRRIKFDELLAQQLSLAAARAARHDKRAPSMAPDTKPAGLT 248

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            ++   +PF+ T +Q+  + +I  D+++   M R+LQGDVGSGKT+VA +A A A+  G 
Sbjct: 249 ARLYAALPFTLTGAQQRVVAEIATDLARPYPMHRLLQGDVGSGKTVVAAVAAAQAIANGF 308

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  +MAP  ILA+QH+  +  + +   + V  ++G++   +RRKA E I  G+  +++GT
Sbjct: 309 QVALMAPTEILAEQHFRKLAAWLEPLGVSVAWLSGSLTLKNRRKAAEAIEAGEVQLVVGT 368

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKL------TQKATAPHVLLMTATPIPRTLV 436
            AL QD + + +L L IVDEQHRFGV QRL L       +    PH L M+ATPIPRTL 
Sbjct: 369 QALIQDHVNFPRLGLSIVDEQHRFGVGQRLALSRKGEEAEGRVVPHQLSMSATPIPRTLA 428

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +T   D+D+S I E P GR P+ T ++   R DE+I  +      G++AYW+CP +EE +
Sbjct: 429 MTFFADLDVSVIDELPPGRTPVLTKLLSEGRRDELIAHIAQAARAGRQAYWVCPLVEESE 488

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
               ++ V+ + ++        + ++HGR+   +K +VM++F+ G   LL+ATTVIEVG+
Sbjct: 489 ALQLQTAVDTYETMRVELPDLRVGLVHGRLPQTEKAAVMEAFRAGDVDLLVATTVIEVGV 548

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +AS+++IE+AE FGLAQLHQLRGRVGRGE  S C+LLY  PLS+ +  RL  +  T 
Sbjct: 549 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGEAESVCVLLYQTPLSQVARERLRAMFETS 608

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           DGF IA  DL+ R  GE LG +QSGM     A  +    L E AR  A  +   D
Sbjct: 609 DGFEIARRDLELRGPGEFLGTRQSGMELLRFANIDQDIELAEAARDTAAWLRQHD 663


>gi|296161047|ref|ZP_06843858.1| ATP-dependent DNA helicase RecG [Burkholderia sp. Ch1-1]
 gi|295888746|gb|EFG68553.1| ATP-dependent DNA helicase RecG [Burkholderia sp. Ch1-1]
          Length = 810

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 244/660 (36%), Positives = 364/660 (55%), Gaps = 31/660 (4%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
           +K +  L+K+        TR IDL+ + P  + D      I  +    I    G +   +
Sbjct: 125 EKTADKLAKL------GLTRDIDLVLHLPMRYEDETSLTPIGHLLPGGIAQTEGVVFD-N 177

Query: 81  SFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
               + RR   + L D  G E+ L F       +K +   G ++ V G ++     + MV
Sbjct: 178 EIAYRPRRQLLVKLRDDAGDELVLRFLNFYGSQVKQM-AIGARLRVRGDVRGGFFGMEMV 236

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL---PVLPEWIEKDLLQK 196
           HP     +        +  VY    G++    +K I  ALSR     +LPE + +  L+ 
Sbjct: 237 HPAVRVVDEDTPLPQALTPVYPSTAGVTQAYLRKSIDNALSRTSLPELLPEPVARTWLEP 296

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              PS+ +A   +H+P    D     + T PA  R+ ++ELLA Q++L    ++ +    
Sbjct: 297 LGVPSLMDAVRTLHHPGVQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHEERRTRAA 356

Query: 253 IPINV-----EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +       E  +  ++L+ +PFS T +QE    +I  D++Q + M R+LQGDVGSGKT
Sbjct: 357 PAMPRRKLGDESALVARLLKALPFSLTAAQERVGGEIALDLTQPHPMQRLLQGDVGSGKT 416

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 417 IVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTREKRAA 476

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           +E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV QRL L  KA         
Sbjct: 477 IEAAALGTAQLVIGTHAIIQDAVEFARLGLVIVDEQHRFGVAQRLALRAKAQNAADGARD 536

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R +EVI R++  
Sbjct: 537 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREA 596

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L       ++ ++HGR++  +K +VMD+F
Sbjct: 597 ALTGRQVYWVCPLIEESETLQLQTAVETYETLVAALPELNVGLVHGRLAPAEKAAVMDAF 656

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 657 TRNEVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYT 716

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 717 GPLSMTARARLQTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDQWLIE 776


>gi|253682695|ref|ZP_04863492.1| ATP-dependent DNA helicase RecG [Clostridium botulinum D str. 1873]
 gi|253562407|gb|EES91859.1| ATP-dependent DNA helicase RecG [Clostridium botulinum D str. 1873]
          Length = 673

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 230/666 (34%), Positives = 371/666 (55%), Gaps = 24/666 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +   +++ +G+G K    L+K          + +DLL Y P  +    Y   I+ + +  
Sbjct: 3   INDDVASLKGIGPKTQELLNK------CGIYKILDLLLYFPRDYEKIQYCNDINNLKDAD 56

Query: 69  IVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V I   + Q       KR      ++      E    +F +K   +KN F    +  + 
Sbjct: 57  KVIIKAKVKQIKKDIYVKRNMIISSVIFTKNNLEFEGKWFNQK--YIKNKFKLNEECIIL 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK+K  +++I +++P+ + +  + +N   I   YSL   L+ + F K I   LS +  + 
Sbjct: 115 GKVKMDRHKISIINPNILENTEKLLN---ITPKYSLKGNLTNNFFNKTINYILSNI-TIV 170

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E I K++L K    S+ +A   IHNP++ ++        +RL + EL    + LL+++ Q
Sbjct: 171 ENIPKNILDKYDLLSLDKAIRSIHNPKQEEELLNAM---KRLKFQELFTYSLKLLMLK-Q 226

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           +KK  GI   +  +  + +  ++PF+ T +Q   +++IL D  +   M R++QGDVGSGK
Sbjct: 227 YKKSKGIAFKI-AEELKILKESLPFTLTDAQNKVVREILIDEKRDRPMNRLVQGDVGSGK 285

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+V+LIA+   V+ G Q V+MAP  ILA QHY+      +   + +E++TG+  +    K
Sbjct: 286 TIVSLIALFNVVKNGYQGVLMAPTEILANQHYQQAINLLEKFNVRIELLTGSTKKKDIIK 345

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
           +  ++  G+  I+IGTHAL +D +++  L +V+ DEQHRFGV+QR K+  K     VL+M
Sbjct: 346 S--KLKSGEIDIVIGTHALLEDDVEFNNLGMVVTDEQHRFGVKQRSKIYNKNNNIDVLVM 403

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L+  GD+DIS I + P GRK I T  +  N+ + V       +  G + Y
Sbjct: 404 TATPIPRTLALSLYGDLDISTIDKLPPGRKKIDTFSVRENKRNRVYNFALKEIQNGAQVY 463

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP +E  +E N +SV +    L + + +   + I+HG+M    KE +M+ FK G  K+
Sbjct: 464 IVCPFVEANEELNIKSVEKLHMELKDEYFNDVEVEILHGKMPSKSKEEIMERFKMGKTKV 523

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LI+TTVIEVG++V +A+++IIE+AE FGL+QLHQLRGRVGRG + S CIL+ +   +  +
Sbjct: 524 LISTTVIEVGVNVPNATLMIIESAERFGLSQLHQLRGRVGRGNKKSYCILITNSN-NYIT 582

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R++++  + DGF IAEEDLK R  GEI G  Q G   F+I+       +   A K+AK
Sbjct: 583 KQRMNIITKSNDGFFIAEEDLKLRGSGEIFGFNQHGENGFIISDIINDYRIFRNANKEAK 642

Query: 665 HILTQD 670
            ++  +
Sbjct: 643 ILIKSE 648


>gi|116333593|ref|YP_795120.1| RecG-like helicase [Lactobacillus brevis ATCC 367]
 gi|116098940|gb|ABJ64089.1| ATP-dependent DNA helicase RecG [Lactobacillus brevis ATCC 367]
          Length = 677

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 230/686 (33%), Positives = 366/686 (53%), Gaps = 26/686 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   +S   GVG K    L  +            DLL Y P  + D   +   +E++
Sbjct: 1   MASLSDAVSQLAGVGPKRVQALQSL------GIENMNDLLTYFPFRYEDLQAKDP-AELT 53

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           ++  VT+ G ++         R+  ++   LL D    + + FF +    LK+    G +
Sbjct: 54  DQAKVTLKGTVAGAPVLTRFGRKKNRLNFRLLVDEHTAMPVTFFNQ--PWLKDQLEVGNE 111

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           I V G+    +  +  +        S D     I   Y     +     KK++ EA  + 
Sbjct: 112 IVVYGRFDAKRQSLAGM----KILASADSGMGSI---YPANKEIRQGTVKKLVAEAYEQY 164

Query: 183 P-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
             V+ + I + L +        E  + +H P    D      AR    ++E    ++ L 
Sbjct: 165 ASVIVDLIPETLREHYRLLHRREMIHDMHFP---ADETAAQAARRTAKFEEFYLFELRLQ 221

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +++ Q     G P+  +    +  + ++P+  T +Q+  + +I  D+ +   M R+LQGD
Sbjct: 222 IVKLQDHTLHGQPLAYDLSKLKAFIASLPYELTAAQKRVVNEICFDLKRPIHMNRLLQGD 281

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA IAM AA+ AG QA +MAP  ILA+QH   + K   +  + V ++TG    
Sbjct: 282 VGSGKTVVAAIAMYAAITAGAQAALMAPTEILAEQHANNLAKLFADFPVNVALLTGATKA 341

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           A R+  L +IA G   ++IGTHAL Q  + Y++L L ++DEQHRFGV QR  L +K   P
Sbjct: 342 AARKTLLPQIAQGGVDLLIGTHALIQPEVTYHQLGLAVIDEQHRFGVNQRQALREKGQQP 401

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL +T+ G++D+S I E PAGR+PIKT  I  N++D  + ++K  LS 
Sbjct: 402 DVLAMTATPIPRTLAITAYGEMDVSVINELPAGRQPIKTTWIRSNQVDATLRQVKAELST 461

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
           G +AY + P IEE +  + ++    +      F  T  + ++HGRM D +K ++M +FK 
Sbjct: 462 GSQAYVVTPLIEESEAVDMKNAEAIYERFKTEFEPTYKVGLLHGRMKDDEKNAIMAAFKA 521

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              ++L+ATTVIEVG+DV +A++++I +A+HFGLAQLHQLRGRVGRG   S+CIL+  P 
Sbjct: 522 NEFQVLVATTVIEVGVDVPNATLMMIYDADHFGLAQLHQLRGRVGRGTRASACILIADPK 581

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++ +  R++ + +T DGF+++++DL+ R  G+ILG KQSG+P F +  P    ++L  A
Sbjct: 582 -NQLAIERMTTMTSTNDGFVLSQKDLELRGPGDILGRKQSGVPDFKVGDPVADLNILSAA 640

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685
           ++ AK  +            ++   L
Sbjct: 641 QQAAKETVAAPNWAEKDANLALAAFL 666


>gi|296535470|ref|ZP_06897659.1| DNA helicase RecG [Roseomonas cervicalis ATCC 49957]
 gi|296264191|gb|EFH10627.1| DNA helicase RecG [Roseomonas cervicalis ATCC 49957]
          Length = 693

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 256/697 (36%), Positives = 403/697 (57%), Gaps = 23/697 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PLFAPL +   V ++    L+ ++  G     R +DLLF+ P  + DR      ++  E 
Sbjct: 16  PLFAPLDSLP-VPEEKRKRLAALVEGG-----RVMDLLFHLPERYQDRRN----AQPREG 65

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTE---MLKNVFFEGRKIT 124
            I T+   +   ++      +P+ +  +   G I L++F R++     L   + EG    
Sbjct: 66  EIATLPVRVLGIAAPG-SPVQPWAVRCDSEDGPIDLIYFGRRSWLGAWLSRTYPEGAPRR 124

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           V+G++K+ ++R  M  P ++         P ++ ++ L  GL      + + +AL+ LP 
Sbjct: 125 VSGRVKRYRDRWQMDAPDFVEPPDV---IPELQPIWPLAKGLGQRDLGRAMADALALLPE 181

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LPEW +  LL ++ +P    A + I  P    D       R+RLAYDELLAGQ+A+ L+R
Sbjct: 182 LPEWQDATLLARRRWPGFGAALHAIQAPEAVPD----DTPRDRLAYDELLAGQLAVGLVR 237

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +   +  G  +  + ++    L      PT  Q  AI +I  D++   RMLR+LQGDVG+
Sbjct: 238 RTVLQRPGRALTGDSRLRAAALHAFGHQPTPGQARAIAEIDADLAAPRRMLRLLQGDVGA 297

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKTLVA++AM  AVE G QA +MAP  +LA+QH   ++K      +   ++ G++    R
Sbjct: 298 GKTLVAVMAMLRAVEGGAQAALMAPTELLARQHLRTLEKLAGAAGVPCALLAGSVKGKER 357

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           ++ L  +A G   +++GTHAL ++ + +  L L +VDEQHRFGV QRL LT+K T   VL
Sbjct: 358 KRVLAGLADGAIPLVVGTHALIEEGVAFRDLGLAVVDEQHRFGVAQRLALTEKGT-TDVL 416

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL+LT  G++ +S++   PAGR+PI T I+   R +E++ RL+   +EG +
Sbjct: 417 VMTATPIPRTLLLTQWGEMAVSRLEGLPAGRQPIVTRIVSRERREELVARLRAAFAEGHR 476

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           AYW+   +EE ++ +  +    F  L   F   + + HG      +E+ +  F  G  +L
Sbjct: 477 AYWVVRAVEEGEKHDNAAAETTFADLAAIFGDKVRLAHGAQKLEVREAALHDFAAGRAQL 536

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+ATTV+EVG+DV +A+I+IIE AE FGLA LHQLRGRVGRG   S C+LL    L+ + 
Sbjct: 537 LVATTVVEVGVDVPEATIMIIEQAERFGLAALHQLRGRVGRGRAQSFCLLLPSAELNDSE 596

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL+VL+ T+DGF+IA+ DL+ R  G+ LG++Q+G     +A P+ H  L+ +A +DA 
Sbjct: 597 QRRLAVLRETQDGFVIADADLEYRGGGDALGVRQAGRIGRRLADPQRHGGLVRMAHQDAA 656

Query: 665 HILTQDPDLTS-VRGQSIRILLYLYQYNEAFQFIRAG 700
            +L +DP L++  RG++ R+LL L+ ++ +   + AG
Sbjct: 657 LLLEKDPALSATPRGRAARLLLALFGHDLSLAPLAAG 693


>gi|304439763|ref|ZP_07399661.1| DNA helicase RecG [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371750|gb|EFM25358.1| DNA helicase RecG [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 670

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 218/676 (32%), Positives = 356/676 (52%), Gaps = 21/676 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF  L T  GVG K   +L               DL  Y P  FID      I ++ E  
Sbjct: 3   LFDKLDTLNGVGPKKKSYLE------AMGLETISDLAEYFPIRFIDSTNMKPIKDLVEGE 56

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
             TI   + Q       + +   +++ DG   + + FF +    L + F +G +    GK
Sbjct: 57  FATIKAEVVQVVPHYHGRLKRLDVIVTDGFN-LKISFFNQN--FLSSTFLKGEQFYFYGK 113

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           + +  N + M  P +     + V    I  VY     ++     K+  + L         
Sbjct: 114 VSRFGNNLTMTSPKFENVKRKKV-LGSIIPVYQQSKDINNKELIKLTDQVLKEY-AWKNV 171

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           + +++L+K     + +    +H P+  K +     AR   ++ E+L   +AL  ++K  +
Sbjct: 172 LPQEILEKYKLYDMDKTMRELHRPKSQKTY---GNARNSYSFYEILIYLLALSTIKKDRE 228

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +     I  E    ++ L  +PF+ T SQ   I+++  D+    R+ R++QGDVGSGKT+
Sbjct: 229 ETDIKLIEFE---IEEFLNTLPFTLTDSQMKVIEEVKGDLKSGYRVDRLIQGDVGSGKTV 285

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA+  M    + G Q+ IMAP  ILA QH+   K       I V ++ G+M ++ + + L
Sbjct: 286 VAMAIMYLFYKNGFQSAIMAPTEILATQHHNSFKNTFDKLGINVALLIGSMKKSQKDEVL 345

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +  G+  +I+GTHAL  +++++  L + IVDEQHRFGV QR  L+ K    H ++MTA
Sbjct: 346 EDLKSGKVDMIVGTHALISENVEFKNLGISIVDEQHRFGVLQRKNLSDKG--VHTIVMTA 403

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL L    D+ +S I   PAGR  I+T  I  N + + +E ++  L EG++AY I
Sbjct: 404 TPIPRTLALVMYQDLQVSTIDTPPAGRLKIQTATINENGLIKALEFIEKELKEGRQAYII 463

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           CP I+E +  +  SV + +  + ++F   ++ ++HG+M   +K+  M+ F+     +L++
Sbjct: 464 CPMIDENEMLDLNSVKKVYKEIKKYFKDYNVGLLHGQMKPDEKDRQMEDFEKNKINVLVS 523

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTV+EVG++V +A+++++ NAE FGL+QLHQLRGRVGRG     CIL Y+   S+ +  R
Sbjct: 524 TTVVEVGVNVPNATVMMVVNAERFGLSQLHQLRGRVGRGTHQGYCIL-YNKSESEIASMR 582

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           + V+  + DGF I+E+DL+ R  G+I G++QSG   F++A P     +L+ A  +AK+I 
Sbjct: 583 MKVMVESTDGFYISEKDLELRGSGDIFGVRQSGFMGFIMANPIKDKMILKYAALEAKNIY 642

Query: 668 TQDPDLTSVRGQSIRI 683
             DPD        ++I
Sbjct: 643 RDDPDFIKPEHLQLKI 658


>gi|17547430|ref|NP_520832.1| ATP-dependent DNA helicase [Ralstonia solanacearum GMI1000]
 gi|17429733|emb|CAD16418.1| probable atp-dependent dna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 671

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 243/681 (35%), Positives = 360/681 (52%), Gaps = 38/681 (5%)

Query: 46  FYHPSSFIDRHYRPKISEISE----ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
            + P  + D      I+E            + G +++ +    + RR   + + D +GE+
Sbjct: 2   LHLPMRYEDETALLTIAEAVARANTGWAAQVDGVVTR-NEVAFRPRRQLVVHIADDSGEL 60

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            L F       +K +  EG ++ V G+++       MVHP        +     +  VY 
Sbjct: 61  VLRFLNFYGSQVKQM-AEGARLRVRGEVRGGFFGAEMVHPAVRAVTPDEPLPDRLTPVYP 119

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ----KKSFPSIAEAFNIIHNPRKAKD 217
              G++    +K I+ AL R P LPE +   LL+         + AEA  ++H P    D
Sbjct: 120 STAGVAQAYLRKAILNALGRTP-LPETLPDSLLRGPLAPLKLMAPAEAVRLLHQPTPDVD 178

Query: 218 ----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPF 271
                E T PA  R+ +DELLA Q++L   +   +      +   G      + L  +PF
Sbjct: 179 EHSLVERTHPAWLRIKFDELLAQQLSLKRAQAARRTRSAPVLRAGGADGLLARFLAALPF 238

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T +Q    ++I  D+++   M R+LQGDVGSGKT++A +A   A++AG QA +MAP  
Sbjct: 239 KLTGAQARVWEEIRADLARPYPMQRLLQGDVGSGKTVIAALAACQAIDAGRQAALMAPTE 298

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LA+QHY  +  +     + +  + G++ +  + +A  R+A G A ++IGTHAL QD++ 
Sbjct: 299 LLAEQHYRKLSAWLAPLGVDIVWLAGSLKRKQKDEAAARVAAGTAQLVIGTHALIQDTVT 358

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT------------APHVLLMTATPIPRTLVLTS 439
           + +L L +VDEQHRFGV QRL L  KA              PH L+M+ATPIPRTL +T 
Sbjct: 359 FARLGLAVVDEQHRFGVAQRLALRGKAGGTDTPVAETAQLVPHQLMMSATPIPRTLAMTY 418

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR P+ T ++   R DEVIER+     EG++ YW+CP IEE +   
Sbjct: 419 YADLDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYWVCPLIEESEALQ 478

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++ VE F +L +      + ++HGR+   DK +VM +F  G   +L+ATTVIEVG+DV 
Sbjct: 479 LQTAVETFETLSQSLAGLKVGLVHGRLPSADKAAVMSAFAGGELHVLVATTVIEVGVDVP 538

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +AS+++IE+AE FGLAQLHQLRGRVGRG   S CILLY  PLS  +  RL  ++ T DGF
Sbjct: 539 NASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQAPLSPTAKQRLQTMRETTDGF 598

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA  DL  R  GE LG +QSG      A       ++E A+  A+ +L + PD  +V  
Sbjct: 599 EIARRDLDIRGPGEFLGARQSGEAMLRFADLNHDAWMVEFAQGAAEQMLARFPD--AVEA 656

Query: 679 QSIRILLYLYQYNEAFQFIRA 699
              R L       E   ++R 
Sbjct: 657 HLKRWL------GEREHYLRV 671


>gi|27464919|gb|AAO16243.1| ATP-dependent DNA helicase RecG [Staphylococcus capitis]
          Length = 682

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 216/660 (32%), Positives = 363/660 (55%), Gaps = 20/660 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G K    L ++      N     DL+ Y P+ + D      +++  ++  VT+
Sbjct: 13  LDKIKGIGPKRLTILEEL------NINTVEDLVLYLPTRYEDNTVI-DLNQAEDQSTVTV 65

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +    +     R   K+ ++     I + +  ++ T   K     G  +TV GK  +
Sbjct: 66  QGEVYSTPAVAFFGRNKSKLTVHIMVNNIAVKVCLFQSTLFKKENELHGT-VTVKGKWNR 124

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
            K  I      +   + QD     +E VY +  G+     +  I +AL  +  + EW+  
Sbjct: 125 AKQEINGNRMFFNEQSPQDDVQ--LEPVYRIKEGIKQKQIRDNIRQALEDV-TIHEWLSD 181

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKE 250
           DL +K    ++      +H+P   KD +    AR   A+ EL   ++ +  L R +   +
Sbjct: 182 DLREKYKLETLEYTLRTLHHP---KDKQSLLKARRTYAFTELFMFELRMQWLNRLEKSSD 238

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             I I+ +    ++ +  +PF  T +Q++++ +I +D+    RM R+LQGDVGSGKT+VA
Sbjct: 239 EAIEIDYDISKVKQFINRLPFELTDAQKASVNEIFRDLKAPIRMHRLLQGDVGSGKTVVA 298

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            I M A   AG Q+ +M P  ILA+QH E + +   +T   V ++TG++    RR  LE+
Sbjct: 299 AICMYALKTAGYQSALMVPTEILAEQHAESLMELFGDTM-NVALLTGSVKGKKRRILLEQ 357

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           + +G    +IGTHAL QD + +  + LVI DEQHRFGV QR  L +K    +VL MTATP
Sbjct: 358 LENGSIDCLIGTHALIQDDVVFENVGLVITDEQHRFGVNQRQMLREKGAMTNVLFMTATP 417

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL ++  G++D+S I + P GRKPI T      + ++V+ ++   L +G++AY ICP
Sbjct: 418 IPRTLAISVFGEMDVSSIKQLPKGRKPIITSWAKHEQYEQVLAQMTSELRKGRQAYVICP 477

Query: 491 QIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            IE  +   + ++VV  + SL +++ +  + ++HG+++  +K+ VM  F +    +L++T
Sbjct: 478 LIESSEHLEDVQNVVALYESLQQYYGADKVGLLHGKLTPDEKDDVMQRFSDKEIDILVST 537

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TV+EVG++V +A+ ++I +A+ FGL+ LHQLRGRVGR E  S C+L+  P  ++    R+
Sbjct: 538 TVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK-TETGIERM 596

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +++  T DGF ++E DL+ R  G+  G+KQSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 597 TIMTQTSDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAELIQ 656


>gi|317404929|gb|EFV85296.1| ATP-dependent DNA helicase [Achromobacter xylosoxidans C54]
          Length = 696

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 238/682 (34%), Positives = 356/682 (52%), Gaps = 24/682 (3%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           +G GK  +    K+ N          D + + P  + D      IS++       + G I
Sbjct: 16  KGAGKAMTDTERKLRNL---GLVLPEDFVLHLPLRYEDETRVIPISQLRPGFAGQVEGEI 72

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
           ++ S    + RR     L D +GE+ L +        K V   G+++   G+++      
Sbjct: 73  TK-SEVLYRPRRQLTATLADDSGELQLRWLNFYPSQQKQV-TVGKRLRARGEVRGGLFGR 130

Query: 137 IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK 196
            MVHP     N+       +  VY    GL     ++ I +AL R   L + +    L +
Sbjct: 131 EMVHP--RLTNADAPLPTALTPVYPSTEGLPQLTLRRAIAQALDRAD-LSDTLPPQALAR 187

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P  A A   +H P + +      +   PA  R+ +DELLA Q++L   R   + +  
Sbjct: 188 YDLPPFAPAIRALHTPAQGESEAALLDRVHPAWRRIKFDELLAQQLSLAAARAARRVKEA 247

Query: 253 IPINVEGKI---AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
             + V  +      ++ + +PF  T +Q+  + +I  D+++   M R+LQGDVGSGKT+V
Sbjct: 248 EVLPVRDEPGGLVDRLYQALPFKLTGAQQRVVAEISADLARPYPMHRLLQGDVGSGKTVV 307

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A IA A A+  G Q  +MAP  ILA+QH+  +  + Q   + V  ++G++    RR+A  
Sbjct: 308 AAIAAAQAIAGGAQVALMAPTEILAEQHFRKLVSWLQPLGVNVAWLSGSLTAKARREAAA 367

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA------PHV 423
             A G   +++GT AL QD +++ +L L IVDEQHRFGV QRL LT+K         PH 
Sbjct: 368 AAADGSVQLVVGTQALIQDHVEFQRLGLSIVDEQHRFGVGQRLALTRKGETVRGRIVPHQ 427

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L M+ATPIPRTL +T   D+D+S I E P GR P+ T ++   R +EVI  +      G+
Sbjct: 428 LNMSATPIPRTLAMTFFADLDVSVIDELPPGRTPVLTKLVSDARREEVIAHIAQAARGGQ 487

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           +AYW+CP +EE +    ++ V+ +  +        I ++HGR+   +K +VM +F+ G  
Sbjct: 488 QAYWVCPLVEESEALELQTAVDTYEGMRVDLPDLRIGLVHGRLPQAEKAAVMQAFREGEI 547

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS+
Sbjct: 548 DLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCVLLYQTPLSQ 607

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL  +  T DGF IA  DL+QR  GE LG +QSGM     A  E    + E AR  
Sbjct: 608 VARERLRAMFETSDGFEIARRDLEQRGPGEFLGTRQSGMALLRFADLETDAEIAEQARDA 667

Query: 663 AKHILTQDPDLTSVRGQSIRIL 684
           A  +  + P   +V     R +
Sbjct: 668 AVWLRAEHP--AAVEAHLARWM 687


>gi|227544370|ref|ZP_03974419.1| DNA helicase RecG [Lactobacillus reuteri CF48-3A]
 gi|300909769|ref|ZP_07127230.1| DNA helicase RecG [Lactobacillus reuteri SD2112]
 gi|227185633|gb|EEI65704.1| DNA helicase RecG [Lactobacillus reuteri CF48-3A]
 gi|300893634|gb|EFK86993.1| DNA helicase RecG [Lactobacillus reuteri SD2112]
          Length = 686

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 232/696 (33%), Positives = 368/696 (52%), Gaps = 24/696 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L   ++  +GVG K    L+ +            DLL Y+P+ + D      I    
Sbjct: 9   LRSLTDSVANLKGVGPKRVADLATL------GIDTIEDLLTYYPTRYNDFT-PTDIESAK 61

Query: 66  EERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           +++ +T+ G +           +R      +  G   +   FF +    +K      +++
Sbjct: 62  DKQKITLQGVVVSEPLLVRYGYRRNRLTFRMQVGNEVVIATFFNQ--PYIKKQIELNQQV 119

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           TV GK    + ++            +  +     AVY++   +  ++ +  I +A     
Sbjct: 120 TVMGKWDASRRQVTGN----KLLKEKADDRNEFGAVYAVNKHIRQNVLQSFIRQAYEEYA 175

Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            ++P ++ + + Q+       +    IH P+     +         AY+E    Q+ L  
Sbjct: 176 NIIPTYLPETIRQRYRLMDRRQMIREIHFPQTQATAKAARRT---AAYEEFFLFQLRLQA 232

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  ++E G  I       ++ +  +PF  T +Q+  + +I +DM Q  +M R+LQGDV
Sbjct: 233 IRRAHRQEDGERILYHNDELKEFIGGLPFELTDAQKRVVNEICRDMRQPYQMNRLLQGDV 292

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA IA+ AA+ AG QA +MAP  ILA QH E + K  + T + V ++TG++   
Sbjct: 293 GSGKTIVAAIAIYAAITAGYQAALMAPTEILAGQHAEKLAKIFEGTHVQVALLTGSLTAK 352

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
             R+ L  +  G  ++I+GTHAL QD ++Y  L LVI DEQHRFGV QR +L +K   P 
Sbjct: 353 QHRELLTAMKRGDVNLIVGTHALIQDGVEYANLGLVITDEQHRFGVNQRQQLREKGEHPD 412

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL +T+ G++D+S I + PAGRKPI+T  +  N+    I  L+  L +G
Sbjct: 413 VLAMTATPIPRTLAITNYGEMDVSIIDQLPAGRKPIQTKWLQSNQHAAAIHFLREQLKQG 472

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540
            +AY + P IEE    + ++  + +N L         + ++HGRM   +K+  M  FK+G
Sbjct: 473 AQAYVVSPLIEESAALDVQNATDLYNQLSADLEPAYKVGLLHGRMGTEEKDEAMRQFKSG 532

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+D  +A++++I +A+ FGLAQLHQLRGRVGRG   S C+L+  P  
Sbjct: 533 ELQVLVATTVIEVGVDNPNATVMVIYDADRFGLAQLHQLRGRVGRGSRQSYCLLIADPK- 591

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +     R+  +  T+DGF IAE+DLK R  G++LG KQSGMP+F +  P     +L+IAR
Sbjct: 592 TDEGKARMKTMVATDDGFKIAEQDLKLRGSGDVLGKKQSGMPEFKVGDPVADLKMLQIAR 651

Query: 661 KDAKHILTQDPDLTSV-RGQSIRILLYLYQYNEAFQ 695
            DA ++L   P+   V   Q + + L  ++    F 
Sbjct: 652 ADAGNLLGM-PNWDQVDENQPLVLYLKRHELETHFD 686


>gi|309792329|ref|ZP_07686799.1| ATP-dependent DNA helicase RecG [Oscillochloris trichoides DG6]
 gi|308225644|gb|EFO79402.1| ATP-dependent DNA helicase RecG [Oscillochloris trichoides DG6]
          Length = 855

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 232/739 (31%), Positives = 369/739 (49%), Gaps = 64/739 (8%)

Query: 2   RPSFLNPLFAPLSTFRGV-GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           RP  + P  +P +  + V G +    L+              DLL++ P  + D      
Sbjct: 121 RPPLVEPPISPYAELKDVPGMQRKDLLA----FKRLKLHTVEDLLYHFPHRYEDYSSHKH 176

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+++      T+ G + +    +    R  +I L D TG I  +FF ++   L      G
Sbjct: 177 IADLIVGSNETVIGTVEETRLVEKTPLR-VEITLGDETGIIKAVFFNQR--WLMWDLSVG 233

Query: 121 RKITVTGKIKKLKNRIIMVHPH---YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
            +I ++GK+        M  P    Y       ++   +  V+ L  GL     +K+I  
Sbjct: 234 DQIVLSGKVSVYGGVRQMTSPAWERYRPEPDALIHTGRLVPVHRLTKGLIDRNARKMIKY 293

Query: 178 ALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            +   +P L + + +   +      + +A + +H P   ++ E     R RL +DE L  
Sbjct: 294 LVDVSVPHLEDHLPEAQRKAAKVLPLGQAISQVHFPNTIQEIEAA---RTRLGFDEFLFI 350

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q+ ++  +  ++ E+G  +     +  ++L ++PF+ T +Q  A+++I  DM++   M R
Sbjct: 351 QLGVMQRKLLWQGELGYAMPHVPAVHAELLEHLPFALTGAQTRALEEIFADMARPVPMAR 410

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK------------- 343
           +LQGDVGSGKT+VA  ++   +  G Q  +MAP  ILA+QHY+ +K+             
Sbjct: 411 LLQGDVGSGKTVVAAASLLQVIANGFQGALMAPTEILAEQHYKGLKRLLSRVRVPRQPRP 470

Query: 344 --------------------------------YTQNTQIIVEIITGNMPQAHRRKALERI 371
                                                 + V ++TG++    RR+ LE I
Sbjct: 471 EVEGADWRTRLSSEEAAQLAEIKALLGMSVEDDMDGAGVRVALLTGSLGAKERRRVLEGI 530

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A G+  +I+GTHAL  + +QY+ L L +VDEQHRFGV+QR +L  K   PH+L+MTATPI
Sbjct: 531 AKGEVDLIVGTHALITEHVQYHSLGLAVVDEQHRFGVEQRQRLRDKGFNPHLLVMTATPI 590

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL +T  GD+D+S + E P GR+ I+T  I     D+    ++  + +G++A+ ICP 
Sbjct: 591 PRTLTMTIYGDLDVSILDELPPGRQTIRTRWISKTDRDKAYRHMRKEIEKGRQAFVICPL 650

Query: 492 IEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +EE  + +  S  E    L         + ++HG+M   +K+ VM +F+     +L+AT 
Sbjct: 651 VEESDKIDLPSAEEMHERLQSEVFPDLRVGLVHGKMLPREKDEVMVAFRERAFDILVATA 710

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVGID+ +AS I+IE AE FGL+QLHQ RGRVGRGE  S CIL+ H   ++    RL 
Sbjct: 711 VIEVGIDIPNASTILIEGAERFGLSQLHQFRGRVGRGEHQSYCILIPHKE-NETGNKRLD 769

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            L  T DGF +AE DL+ R  GE  G +QSG P   IAQ      LL+ A   A+ IL +
Sbjct: 770 ALTETSDGFRLAEIDLELRGPGEFFGTRQSGTPDLKIAQLT-DVGLLKTASNVARAILDE 828

Query: 670 DPDLTSVRGQSIRILLYLY 688
           DP+L   +   ++  + ++
Sbjct: 829 DPELALPQHARLKQKIEIF 847


>gi|21223922|ref|NP_629701.1| ATP-dependent DNA helicase RecG [Streptomyces coelicolor A3(2)]
 gi|256784979|ref|ZP_05523410.1| ATP-dependent DNA helicase RecG [Streptomyces lividans TK24]
 gi|289768871|ref|ZP_06528249.1| ATP-dependent DNA helicase RecG [Streptomyces lividans TK24]
 gi|4007725|emb|CAA22409.1| putative ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
 gi|289699070|gb|EFD66499.1| ATP-dependent DNA helicase RecG [Streptomyces lividans TK24]
          Length = 742

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 229/749 (30%), Positives = 368/749 (49%), Gaps = 68/749 (9%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L  PL     +G   +  +++ +           DLL ++P  + +R     ++++  +
Sbjct: 6   ALQEPLKKV--LGPATAKVMAEHL-----GLHTVGDLLHHYPRRYEERGQLTHLADLPMD 58

Query: 68  RIVTITGYISQ-------HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
             VT+   ++         S     K +  ++ + DG+G + L+FF             G
Sbjct: 59  EHVTVVAQVADARLHTFASSKAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHKELLPG 118

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN----------FPLIEAVYSLPTGLSVDL 170
            +    GK+     R+ + HP Y      D               +  +Y     L    
Sbjct: 119 TRAMFAGKVSVFNRRLQLAHPAYELLRGGDDEGEAAESVESWAGALIPLYPATAKLESWK 178

Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
             K I   L       + +   L + +   S+ EA   IH P    D E    AR RL +
Sbjct: 179 LAKAIQTVLPSAQEAVDPLPGSLREGRGLVSLPEALLKIHRPHTKADIE---DARARLKW 235

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
           DE    Q+AL   R    +   +P       +       +PF+ T  Q    ++I  D++
Sbjct: 236 DEAFVLQVALARRRHAESQLPAVPRKPGADGLLTAFDDRLPFTLTDGQRKVSREIFDDLA 295

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY----- 344
             + M R+LQG+VGSGKTLVAL AM A V++GGQAV++AP  +LAQQH+  + +      
Sbjct: 296 TDHPMHRLLQGEVGSGKTLVALRAMLAVVDSGGQAVMLAPTEVLAQQHHRSVVEMMGELA 355

Query: 345 ------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                        V ++TG+M  A RR AL  +A G+A I+IGTHAL +D +Q++ L LV
Sbjct: 356 EGGMLGGAEHATKVVLLTGSMGAAARRHALLDLATGEAGIVIGTHALIEDKVQFHDLGLV 415

Query: 399 IVDEQHRFGVQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +VDEQHRFGV+QR  L  +    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR P
Sbjct: 416 VVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSP 475

Query: 458 IKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR------------ 501
           I + ++P       +    ER++  +S G +AY +CP+I ++ +   +            
Sbjct: 476 IASHVVPAADKPHFLARAWERVREEVSNGHQAYVVCPRIGDEDDDPGKGAKQSKQPPEGD 535

Query: 502 -------SVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                  +V++    L         + ++HGRM   DK++VM  F  G   +L+ATTVIE
Sbjct: 536 ADKRPPLAVLDVAEQLARGPLQGLGVEVLHGRMQPDDKDAVMRRFAAGETDVLVATTVIE 595

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG++V +A+ ++I +A+ FG++QLHQLRGRVGRG     C+L+   P +  +  RL+ + 
Sbjct: 596 VGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEMPEASAARQRLNAVA 655

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDP 671
           +T DGF ++  DL+QR+EG++LG  QSG      +      + ++  AR++A  ++  DP
Sbjct: 656 STRDGFELSRIDLEQRREGDVLGQAQSGARTSLRVLAVIEDEEIIAEARQEAAAVVAADP 715

Query: 672 DLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +LT + G  +R  L      E  Q++  G
Sbjct: 716 ELTGLPG--LRTALEALLDEEREQYLEKG 742


>gi|121592808|ref|YP_984704.1| ATP-dependent DNA helicase RecG [Acidovorax sp. JS42]
 gi|120604888|gb|ABM40628.1| ATP-dependent DNA helicase RecG [Acidovorax sp. JS42]
          Length = 723

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 232/687 (33%), Positives = 356/687 (51%), Gaps = 50/687 (7%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN 95
               R IDL  + P  + D      I    +   V I   ++  S  Q++ RR   + + 
Sbjct: 29  LGLVRDIDLALHLPLRYEDETRITPIRSARDGDTVQIEATVTA-SEVQMRPRRQLVVTVE 87

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL 155
           DGTG   L FF       K +   G ++ V G+IK       M+HP +    ++      
Sbjct: 88  DGTGSCELRFFSFYPSHQKTM-AVGARLRVRGEIKGGFWGRQMLHPAFR--KAEGDLPAA 144

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK--------------KSFPS 201
           +  VY     L     ++ +  AL+R+  LPE +   L                 +   S
Sbjct: 145 LTPVYPTVAQLPQAYLRRAVASALTRVE-LPETLPPGLEPPAVPSWVRGNGQNGLQRPWS 203

Query: 202 IAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
           + E+   +H+P          + + PA +RL  +ELLA Q++ L  +++  +     +  
Sbjct: 204 LRESLLFLHHPTPDVALATLQDHSHPAWQRLKAEELLAQQLSQLTAKRERARLRAPALRP 263

Query: 258 E-----GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           +       + +++L  +PFS T +Q    ++I +D+++   M R+LQGDVGSGKT+VA +
Sbjct: 264 QAQAGSTPLHEQLLGVLPFSLTAAQRRVGEEIARDLARPVPMHRLLQGDVGSGKTVVAAL 323

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT----QIIVEIITGNMPQAHRRKAL 368
           A    ++AG Q  +MAP  ILA+QH+  +  + Q         V  + G   +  R + L
Sbjct: 324 AATVCMDAGWQCALMAPTEILAEQHFAKLIGWLQPLLAARGRQVAWLVGGQKKKERAEML 383

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVL 424
            RI  G+A +++GTHA+ Q+ +++  L L ++DEQHRFGV QRL L +K       PH+L
Sbjct: 384 ARIESGEAALVVGTHAVIQEQVRFKNLALAVIDEQHRFGVAQRLALRKKLQHAGMEPHLL 443

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPRTL ++   D+D+S I E P GR PI T +I  +R DEV+ER+   ++ G++
Sbjct: 444 MMSATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVVERIGAQVAAGRQ 503

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---------IAIIHGRMSDIDKESVMD 535
            YW+CP IEE +  +  +       L E              + ++H RM   +K++VMD
Sbjct: 504 VYWVCPLIEESEALDLSNATATHAELSEALQGDAAPGRAPVMVGLLHSRMPAAEKKAVMD 563

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LL
Sbjct: 564 LFKGGQMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLL 623

Query: 596 YHP----PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           Y       L + +  RL  +  T DGF IA  DL+ R  GE LG +QSG      A    
Sbjct: 624 YSTGDSGRLGETARDRLKAMAETTDGFEIARRDLEIRGPGEFLGARQSGDALLRFADLAT 683

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRG 678
              LLE AR+ A  +L + P L + R 
Sbjct: 684 DTLLLEWARETAPQMLDRHP-LLAERH 709


>gi|194466496|ref|ZP_03072483.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri 100-23]
 gi|194453532|gb|EDX42429.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri 100-23]
          Length = 678

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 229/695 (32%), Positives = 365/695 (52%), Gaps = 22/695 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   ++  +GVG K    L+ +            DLL Y+P+ + D      I    
Sbjct: 1   MRSLTDSVANLKGVGPKRVADLATL------GIDTIEDLLTYYPTRYNDFT-PTDIESAK 53

Query: 66  EERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           +++ +T+ G +           +R      +  G   +   FF +    +K      +++
Sbjct: 54  DKQKITLQGVVVSEPLLVRYGYRRNRLTFRMQVGNEVVIATFFNQ--PYIKKQIELNQQV 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           TV GK    + ++            +  +     AVY++   +  ++ +  I +A     
Sbjct: 112 TVIGKWDAPRRQVTGN----KLLKEKADDRNEFGAVYAVNKHIRQNVLQSFIRQAYEEYA 167

Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            ++P ++ + + Q+       +    IH P+     +         AY+E    Q+ L  
Sbjct: 168 NIIPTYLPETIRQRYRLMDRRQMIREIHFPQTQATAKAARRT---AAYEEFFLFQLRLQA 224

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  ++E G  I       ++ +  +PF  T +Q+  + +I +DM Q  +M R+LQGDV
Sbjct: 225 IRRAHRQEDGERILYHNDELKEFIGGLPFELTDAQKRVVNEICRDMRQPYQMNRLLQGDV 284

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA IA+ AA+ AG QA +MAP  ILA QH E + K  + T + V ++TG++   
Sbjct: 285 GSGKTIVAAIAIYAAITAGYQAALMAPTEILAGQHAEKLAKIFEGTHVQVALLTGSLTAK 344

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
             R+ L  +  G  ++I+GTHAL QD ++Y  L LVI DEQHRFGV QR +L +K   P 
Sbjct: 345 QHRELLRAMKRGDVNLIVGTHALIQDGVEYANLGLVITDEQHRFGVNQRQQLREKGEHPD 404

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL +T+ G++D+S I + PAGRKPI+T  +  N+    I  L+  L +G
Sbjct: 405 VLAMTATPIPRTLAITNYGEMDVSIIDQLPAGRKPIQTKWLQSNQHAAAIHFLREQLKQG 464

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540
            +AY + P IEE    + ++  + +N L         + ++HGRM   +K+  M  FK+G
Sbjct: 465 AQAYVVSPLIEESAALDVQNATDLYNQLSADLEPAYKVGLLHGRMGTEEKDEAMRQFKSG 524

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+D  +A++++I +A+ FGLAQLHQLRGRVGRG   S C+L+  P  
Sbjct: 525 ELQVLVATTVIEVGVDNPNATVMVIYDADRFGLAQLHQLRGRVGRGNRQSYCLLIADPK- 583

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +     R+  +  T+DGF IAE+DLK R  G++LG KQSGMP+F +  P     +L+IAR
Sbjct: 584 TDEGKARMKTMVATDDGFKIAEQDLKLRGSGDVLGKKQSGMPEFKVGDPVADLKMLQIAR 643

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
            DA ++L           Q + + L  ++    F 
Sbjct: 644 ADAGNLLGMSNWDQVDENQPLVLYLKRHELETHFD 678


>gi|198282859|ref|YP_002219180.1| ATP-dependent DNA helicase RecG [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667943|ref|YP_002425060.1| ATP-dependent DNA helicase RecG [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247380|gb|ACH82973.1| ATP-dependent DNA helicase RecG [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218520156|gb|ACK80742.1| ATP-dependent DNA helicase RecG [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 684

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 247/687 (35%), Positives = 396/687 (57%), Gaps = 17/687 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + +S  RGVG      L  +      +  R  D+LF+ PS + DR +   ++ +   +
Sbjct: 10  LQSSVSALRGVGPALVPRLQHM------DLWRVQDVLFHLPSRYQDRRHIASMATLQAGQ 63

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              I G I +    Q   R  + + ++DG+G + +  F+     L+  +  GR++   G+
Sbjct: 64  ECAILGEIVRV-DHQRGGREQWLVTVSDGSGRLQIRLFHMTVA-LRAQWQVGRRLWCFGE 121

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           ++   + + M+HP +   +      P  +   Y    G++   +++ + +AL+ L  LP+
Sbjct: 122 LRGGFHGLEMIHPEWQMADVPQFQAPRHLTPFYPSSEGITQAQWRRWMAQALTLLDQLPD 181

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF-EWTSPARERLAYDELLAGQIALLLMRKQ 246
           ++E  L  +  +P + E   ++H    A +      PA +RLA +ELLA  +A+  MR+ 
Sbjct: 182 YLENRLPPQ--WPGLREGLRLLH--ESADEIPSPQHPAWQRLALEELLANHLAVRRMRQS 237

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
              +    +  +G++  + L ++PFSPT +QE  I +I  D+ +   M R+LQGDVGSGK
Sbjct: 238 GMMQNAPCLRSKGQLWHRFLAHLPFSPTMAQERVIAEINADLVRHRPMRRLLQGDVGSGK 297

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVA  A   A+EAG Q  +MAP  ILA+Q +   +++ +   + V  + G+     RR+
Sbjct: 298 TLVAAAATLTALEAGYQVAMMAPTEILAEQLHARFQQWLEPLGLEVGYLVGSRSPRARRE 357

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E +A G   ++IGT +LFQ+ + +  L LVI+DEQHRFGV+QR +L +K   PH+L+M
Sbjct: 358 TAETLAGGSLRLVIGTQSLFQEGVVFACLGLVIIDEQHRFGVEQRRQLLEKGAMPHLLVM 417

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL +T   D+++S I   P GR P++T+++P +R  E+I R++ +L  G++ Y
Sbjct: 418 TATPIPRTLAMTVHADLEVSVIDALPPGRTPVETLVMPDSRRPELIGRMQHMLEAGRQIY 477

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           W+CP IEE +    ++       L       ++ +IHGRM   +K  VM +F++G  ++L
Sbjct: 478 WVCPLIEESEILELQAAEASVADLQAALPGVAVGLIHGRMRSTEKAEVMAAFQSGAVRIL 537

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVG+DV  AS++IIE+AE  GLAQLHQLRGRVGRG + SSCILLYHPPLS  + 
Sbjct: 538 VATTVIEVGVDVPGASLMIIEHAERLGLAQLHQLRGRVGRGAQRSSCILLYHPPLSGKAR 597

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL V++ T DGF IA +DL+ R  GE LG +Q+G+ +  +A     ++LL +    A+ 
Sbjct: 598 ERLRVMRETHDGFAIARKDLELRGPGEYLGTRQAGILQMRVANILRDEALLVMVPALAER 657

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNE 692
           +L +DP+  +V+    R L     Y +
Sbjct: 658 LLQEDPE--AVQAIVQRWLGSRVDYGQ 682


>gi|309804299|ref|ZP_07698376.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LactinV
           11V1-d]
 gi|308163702|gb|EFO65972.1| ATP-dependent DNA helicase RecG [Lactobacillus iners LactinV
           11V1-d]
          Length = 673

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 220/694 (31%), Positives = 357/694 (51%), Gaps = 33/694 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  LS++            DLLFY P  + D      ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALSQLK------IKTIYDLLFYFPRRY-DSLETFPLNELK 58

Query: 66  EERIVTITGYISQHSSFQLQK----RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I              R  +K+ ++     I + FF +    LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDHD--IIMVNFFNQ--PWLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS- 180
            I + GK       +       I    +       E VYSL + +        I +A+  
Sbjct: 115 DIAIYGKYVLASQTLSAYK---IVLKEE-----GFEPVYSLNSHIKQKKLVSFISQAIEK 166

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-A 239
            LP LPE I + L  K     +      +H P   KD +    A+    + E    Q+  
Sbjct: 167 YLPQLPEVIPQYLRDKYKLLDVKSMIIQMHQP---KDLQQVKVAQRTAIFLEFFVFQLQL 223

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   RM R+LQ
Sbjct: 224 SQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKRMNRLLQ 283

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   ++T + 
Sbjct: 284 GDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSST 343

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L  K  
Sbjct: 344 KLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGK 403

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++  +   L
Sbjct: 404 MVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQL 463

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
            +G + Y + P I E  + + ++    +  +  +F +  +A++HG+M    K  +MD+F 
Sbjct: 464 EQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSDIMDAFI 523

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S CI +  P
Sbjct: 524 HGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYCIFVSDP 583

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             + ++  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     + ++   
Sbjct: 584 K-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINNYNIFTT 642

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           A+K++K ++ Q+P+L       +++   L +Y++
Sbjct: 643 AQKESKILVHQNPELLGEEYDFLKL---LMEYDD 673


>gi|91781857|ref|YP_557063.1| ATP-dependent DNA helicase RecG [Burkholderia xenovorans LB400]
 gi|91685811|gb|ABE29011.1| ATP-dependent DNA helicase RecG [Burkholderia xenovorans LB400]
          Length = 768

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 244/660 (36%), Positives = 363/660 (55%), Gaps = 31/660 (4%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
           +K +  L+K+        TR IDL+ + P  + D      I  +    I    G +   +
Sbjct: 83  EKTADKLAKL------GLTRDIDLVLHLPMRYEDETSLTPIGHLLPGGIAQTEGVVFD-N 135

Query: 81  SFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
               + RR   + L D  G E+ L F       +K +   G ++ V G ++     + MV
Sbjct: 136 EIAYRPRRQLLVKLRDDAGDELVLRFLNFYGSQVKQM-AIGARLRVRGDVRGGFFGMEMV 194

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL---PVLPEWIEKDLLQK 196
           HP     +        +  VY    G++    +K I  ALSR     +LPE + +  L+ 
Sbjct: 195 HPAVRVVDEDTPLPQALTPVYPSTAGVTQAYLRKSIDNALSRTSLPELLPEPVARTWLEP 254

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              PS+ +A   +H+P    D     + T PA  R+ ++ELLA Q++L    ++ +    
Sbjct: 255 LGVPSLMDAVRTLHHPGVQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHEERRTRAA 314

Query: 253 IPINV-----EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +       E  +  ++L+ +PFS T +QE    +I  D++Q + M R+LQGDVGSGKT
Sbjct: 315 PAMPRRKLGDESALVARLLKALPFSLTAAQERVGGEIALDLTQPHPMQRLLQGDVGSGKT 374

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 375 IVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTREKRAA 434

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           +E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV QRL L  KA         
Sbjct: 435 IEAAALGTAQLVIGTHAIIQDAVEFARLGLVIVDEQHRFGVAQRLALRAKAQNAADGARD 494

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R +EVI R++  
Sbjct: 495 FQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREA 554

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F
Sbjct: 555 ALTGRQVYWVCPLIEESETLQLQTAVETYETLVAALPELKVGLVHGRLAPAEKAAVMDAF 614

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 615 TRNEVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYT 674

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLS  +  RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 675 GPLSMTARARLQTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDQWLIE 734


>gi|298492967|ref|YP_003723144.1| ATP-dependent DNA helicase RecG ['Nostoc azollae' 0708]
 gi|298234885|gb|ADI66021.1| ATP-dependent DNA helicase RecG ['Nostoc azollae' 0708]
          Length = 827

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 231/681 (33%), Positives = 379/681 (55%), Gaps = 29/681 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           LS    +G + +  L+++      +     DLLFY+P   ID   +  I E+     VTI
Sbjct: 134 LSDIAEIGIRKAENLARL------DLLTVRDLLFYYPRDHIDYARQVNIQELQGGETVTI 187

Query: 73  TGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVFFEGR 121
              + + + F   K +   IL   L D TG+I +  FY             LK  +    
Sbjct: 188 IATVKRCNCFTSPKNKKLSILELMLKDNTGQIKVARFYAGARFSSRAWQESLKRRYAVDS 247

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQ-----DVNFPLIEAVYSLPTGLSVDLFKKIIV 176
            I   G +K  K  + + +P      +       +    +  +Y+L  G+  +  ++ ++
Sbjct: 248 VIAACGLVKASKYGLTLDNPELEVLANPGDAINSLTIGRVVPIYALTEGVMANTVRQAVI 307

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            AL     L + +   L QK     + +    IH P   +D +    AR RL +DE    
Sbjct: 308 AALPAAVNLKDPLPGGLRQKYGLMELKDGIANIHFP---EDSDTLKTARRRLVFDEFFYL 364

Query: 237 QIALLLM-RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ LL   RK  + +    +  +GK+ ++    +PF  TK+Q+  I DIL D+ +   M 
Sbjct: 365 QLGLLQRQRKAKEIQTSAVLAPKGKLLEQFNEILPFKLTKAQQRVINDILNDLQKPTPMN 424

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA++A+ AA+++G QA +MAP  +LA+QHY  +  +     + VE++
Sbjct: 425 RLIQGDVGSGKTVVAVVAILAAIQSGYQAALMAPTEVLAEQHYRKLVSWFNLLHLPVELL 484

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG+     RR+   ++  G+  +++GTHAL QD + + +L LV++DEQHRFGV+QR KL 
Sbjct: 485 TGSTKTPKRREIHSQLETGELPLLVGTHALIQDKVNFQQLGLVVIDEQHRFGVEQRAKLR 544

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK   PHVL MTATPIPRTL LT  GD+D+S+I E P GR+ I+T ++   +  +  + +
Sbjct: 545 QKGEQPHVLTMTATPIPRTLALTVHGDLDVSQIDELPPGRQQIQTTLLIGQQRHQAYDLM 604

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESV 533
           +  + +G++ Y + P +EE ++ + RS V+    L E       + ++HGRM+  +K+  
Sbjct: 605 RREVVQGRQVYVVLPLVEESEKLDLRSAVDEHKKLQESVFPDFQVGLLHGRMTSAEKDEA 664

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F++   ++L++TTV+EVG+DV +A++I+IE+AE FGL+QLHQLRGRVGRG   S C+
Sbjct: 665 ITKFRDNETQILVSTTVVEVGVDVPNATLILIEHAERFGLSQLHQLRGRVGRGAAQSYCL 724

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+     S ++  RL VL+ ++DGF I+E D++ R  GE++G +QSG+  F +A     +
Sbjct: 725 LM-SSSRSADAQQRLKVLEQSQDGFFISEMDMRFRGPGEVMGTRQSGIADFTLASLVEDE 783

Query: 654 SLLEIARKDAKHILTQDPDLT 674
            +L +AR+ A+ ++  D  L 
Sbjct: 784 DVLLLARQAAEKVIDMDVSLA 804


>gi|320449878|ref|YP_004201974.1| ATP-dependent DNA helicase RecG [Thermus scotoductus SA-01]
 gi|320150047|gb|ADW21425.1| ATP-dependent DNA helicase RecG [Thermus scotoductus SA-01]
          Length = 775

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 231/684 (33%), Positives = 367/684 (53%), Gaps = 21/684 (3%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           V  +    L+++            DLL Y+P  + DR   P +  + + +  T++  +  
Sbjct: 107 VPPQSRKKLAELS------LHTVRDLLHYYPRRYEDRRTLPGVRFLEDGQKATLSVKVLS 160

Query: 79  HSSFQLQKRRP--YKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
               +  K+     ++   D  G  ITL++F +    + +   EG  + VTG++++ +N 
Sbjct: 161 KELVKTPKKGMQLVQVRAQDAWGFRITLVWFNQ--TWVLSQIQEGETLIVTGRVQR-RNG 217

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ 195
           + +   H+    ++ ++   I  +Y    G+     ++    AL     LP+ +E    +
Sbjct: 218 VQLYVEHFENEGTESLSTGRIVPIYPAKEGIGQAFLRRTAHRALETALPLPDPLEP-YRE 276

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255
           +      +EA   IH P   +D E    A  RL +DE +  ++  LL        +G   
Sbjct: 277 EHRLLPYSEALRQIHFP---EDEEALKKALLRLKFDEYVLLELKALL--DAGGLVLGRSF 331

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
            VE    +   + +PF  T++QE  + +I QDM    +M R+LQGDVGSGKT+VA  A+ 
Sbjct: 332 KVEETWTETFKKTLPFPLTRAQERVMAEIAQDMQSPRQMARLLQGDVGSGKTVVAAYALY 391

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
            A   G Q  +MAP  ILA+QHY+ + +Y     + VE++ G+M    R   +ER+  G+
Sbjct: 392 LAALNGAQGALMAPTEILAKQHYQNLSRYLFPLGVRVELLLGSMTPKEREGVIERLLSGE 451

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRT 434
           A + +GTHAL Q+ + +  L L +VDE+HRFGV QR  L + A   P VL+M+ATPIPR+
Sbjct: 452 AQVAVGTHALIQEGVGFKDLGLAVVDEEHRFGVLQRRALLKLAKVPPDVLVMSATPIPRS 511

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L LT  GD+++S + E P GRKP+KT ++P     +     +  + +G + + + P IEE
Sbjct: 512 LALTLYGDLEVSILDEMPPGRKPVKTKVLPHRLRLQAYAFAREEVRKGHQVFVVAPAIEE 571

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +E + ++    +  L        +A++HGRM   +K+SVM++F+ G   LL++TTV+EV
Sbjct: 572 SEELDLKTATALYEELKGLLPEVRMALLHGRMPAREKDSVMEAFRKGEFDLLVSTTVVEV 631

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+  AS+II+ENAE FGLAQLHQLRGRVGRG   S  IL+     S+ +  RL VL+ 
Sbjct: 632 GVDIPRASLIIVENAERFGLAQLHQLRGRVGRGGLESYAILIAG-EASQKTLKRLKVLEE 690

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           + DGF IAE DLK R  GE+ G +QSG P+  +        ++E AR  AK IL  DPDL
Sbjct: 691 SGDGFYIAEMDLKLRGPGELRGTRQSGYPELKLGDLSQDTEVIEQARALAKRILEMDPDL 750

Query: 674 TSVRGQSIRILLYLYQYNEAFQFI 697
           +  + Q+++  L        F+ +
Sbjct: 751 SLPQHQALKEELRAQAERIGFREV 774


>gi|91786378|ref|YP_547330.1| ATP-dependent DNA helicase RecG [Polaromonas sp. JS666]
 gi|91695603|gb|ABE42432.1| ATP-dependent DNA helicase RecG [Polaromonas sp. JS666]
          Length = 731

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 239/697 (34%), Positives = 352/697 (50%), Gaps = 50/697 (7%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
             L K+         R IDL  + P  + D     ++ +  +  +V I   ++ HS    
Sbjct: 39  KALEKL------GLRRDIDLALHLPLRYEDETRIVQLRDARDGDMVQIEAQVT-HSEVTF 91

Query: 85  QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK----KLKNRIIMVH 140
           + RR  ++ ++DG+    L F        K     G ++ V G+I+           MVH
Sbjct: 92  RPRRQLRVTVDDGSDTCVLRFLNFYPSHQK-TLSVGARVRVRGEIRGGSFAGGFGREMVH 150

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK---K 197
           P +     +      +  VY     L     +K ++  L+R   L E I +  L K   +
Sbjct: 151 PSFKLAGGELP--GALTPVYPTVASLPQAYLRKAVLSGLARAD-LSETIPQQFLNKNLPQ 207

Query: 198 SFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQ---------------- 237
               + EA   +H+P          + + PA +RL  +ELLA Q                
Sbjct: 208 PLSDLREALQFLHHPTPDVMLSTLEDRSHPAWQRLKAEELLAQQLSQLQARRGRAAMRAP 267

Query: 238 -IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            +    MR     +          + +++L  +PF  T +Q+    +I  D+ +   M R
Sbjct: 268 ALGGQSMRNPAADDGASLQGPHCTLHEQLLERLPFRLTPAQQRVCAEIDADLQKSIPMHR 327

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VA +A A  + AG Q  +MAP  ILA+QH+  +  + +   I    +T
Sbjct: 328 LLQGDVGSGKTVVAALATARCMGAGWQCALMAPTEILAEQHFRKLIGWLEPLGIRTAWLT 387

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+     RR+AL  I  G+A ++IGTHA+ QD +++  L L I+DEQHRFGV QRL L  
Sbjct: 388 GSQKAKERREALALIKSGEAGLVIGTHAVIQDKVEFKNLALAIIDEQHRFGVAQRLALRS 447

Query: 417 KAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           K T     PH+L+MTATPIPRTL ++   D+D+S I E P GR PI T ++   R DEVI
Sbjct: 448 KMTEGGQEPHLLMMTATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKVVNDARRDEVI 507

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531
           ER++  L EG++ YW+CP IEE +  +  +  +   +L        + ++H RM   +K+
Sbjct: 508 ERIRGQLLEGRQVYWVCPLIEESESIDLINATQTHEALSAALPGVGVGLLHSRMPVAEKK 567

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           +VM  F  G   +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+
Sbjct: 568 AVMSLFTEGVMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASA 627

Query: 592 CILLYH----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
           C+LLY     P L + +  RL  +  T DGF IA  DL+ R  GE LG +QSG P    A
Sbjct: 628 CVLLYSTGDAPRLGETARERLKAMVQTHDGFEIARRDLEIRGPGEFLGARQSGAPLLRFA 687

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
                  LL  AR  A  +L Q   L   +   +R L
Sbjct: 688 DLATDTQLLAWARGVAPVMLDQHAGLA--QRHILRWL 722


>gi|153954009|ref|YP_001394774.1| ATP-dependent DNA helicase RecG [Clostridium kluyveri DSM 555]
 gi|146346890|gb|EDK33426.1| Hypothetical protein CKL_1384 [Clostridium kluyveri DSM 555]
          Length = 679

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 222/664 (33%), Positives = 367/664 (55%), Gaps = 20/664 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
           +  + + +GVG   +  L+      +      +DLL Y P  +        ++++     
Sbjct: 4   YDDIKSIKGVGAVTAGTLN------SCCIFNILDLLLYFPRDYEIISNCSDLNKVGTG-K 56

Query: 70  VTITGYISQH-SSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           V +   +       + + ++    ++  + +G     +F +    +KN F   +   + G
Sbjct: 57  VIMDCRVKSIGKDIRTKSKKILSTVVFENESGTFQGKWFNQ--PYMKNKFKINKVYRIMG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           KI++    I +++P  + +         I  +Y L +G++ ++  K+I + +  +  + E
Sbjct: 115 KIERFNGSISIMNPTLVSNEVNSKKEDKIIPIYPLKSGITNNILIKLISKVIHEVD-IEE 173

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-Q 246
            +   +++K  F S+ +A   IH P   ++ E     + RL + EL +  + +L+++   
Sbjct: 174 NLPTWIIKKYKFCSLNKAIKAIHKPGSIEELEEA---KRRLKFQELFSYSLKILMLKNYH 230

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            + + GI   +  +  +++ + IP+  TKSQ   I++IL D   ++ M R+LQGDVGSGK
Sbjct: 231 SRNKKGIAFKIASE-LKELKKRIPYELTKSQNKVIREILLDEKMESPMNRLLQGDVGSGK 289

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA+IA+   V+ G QAV MAP  ILA+QHYE  KK+ Q+T + ++++ G++ + +++ 
Sbjct: 290 TIVAIIAIFNVVKNGYQAVFMAPTEILAKQHYEECKKFLQDTGVNIQLLCGSVTERNKKI 349

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E + +G+  IIIGTHAL +D +++  + +V+ DEQHRFGV QR KL  K      L+M
Sbjct: 350 LKEDLKYGKIDIIIGTHALIEDDVEFKNIGMVVTDEQHRFGVAQRSKLINKGKYVDTLVM 409

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L   GD++IS I E P GRK I T        D V +     + +G++ Y
Sbjct: 410 TATPIPRTLSLCLHGDLNISIIDELPPGRKKIHTYYTDKKSKDRVYKFAVEEIKKGRQVY 469

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP +E+    +  SV E ++ L E +     I +++G+MS   KE  M+ FKNG  K 
Sbjct: 470 VVCPLVEQNDNLHLSSVKEIYDKLKEKYFKDLEIGVLYGKMSSSSKEETMNKFKNGEIKA 529

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           +I+TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRGE  S CIL+         
Sbjct: 530 IISTTVIEVGVNVPNAAVMIIENAERFGLAQLHQLRGRVGRGEYKSYCILIADIKNDFV- 588

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ ++K++ DGF IAEEDLK R  GEI G KQ G  + + +       + ++A  +AK
Sbjct: 589 RRRMEIMKSSNDGFFIAEEDLKIRGSGEIFGFKQHGENELIFSNLSEDIHIFKLANLEAK 648

Query: 665 HILT 668
             L 
Sbjct: 649 RFLE 652


>gi|302191502|ref|ZP_07267756.1| ATP-dependent DNA helicase RecG [Lactobacillus iners AB-1]
          Length = 673

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 218/694 (31%), Positives = 357/694 (51%), Gaps = 33/694 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  LS++            DLLFY P  + D      ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALSQLK------IKTIYDLLFYFPRRY-DSLETFPLNELK 58

Query: 66  EERIVTITGYISQHSSFQLQK----RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I              R  +K+ ++     I + FF +    LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDHD--IIMVNFFNQ--PWLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS- 180
            I + GK       +       I    +       E VYSL + +        I +A+  
Sbjct: 115 DIAIYGKYVLASQTLSAYK---IVLREE-----GFEPVYSLNSHIKQKKLVSFISQAIEK 166

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-A 239
            LP LPE I + L  K     +      +H P   KD +    A+    + E    Q+  
Sbjct: 167 YLPQLPEVIPQYLRDKYKLLDVKSMIIQMHQP---KDLQQVKVAQRTAIFLEFFVFQLQL 223

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   RM R+LQ
Sbjct: 224 SQLLYANDQKNSGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKRMNRLLQ 283

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   ++T + 
Sbjct: 284 GDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSST 343

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L  K  
Sbjct: 344 KLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGK 403

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++  +   L
Sbjct: 404 MVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQL 463

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
            +G + Y + P I E  + + ++    +  +  +F +  +A++HG+M+   K  +MD+F 
Sbjct: 464 EQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMASSQKSDIMDAFI 523

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S CI +  P
Sbjct: 524 HGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGSTQSYCIFVSDP 583

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             + ++  RL ++   +DGF +A EDLK R EG++ G  QSG+ +F +     + ++   
Sbjct: 584 K-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDLFGQAQSGIQQFKLGDIINNYNIFTT 642

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           A+K++K ++ Q+P+L       +++   L +Y++
Sbjct: 643 AQKESKILVHQNPELVGEEYDFLKL---LMEYDD 673


>gi|260177190|gb|ACX33914.1| putative ATP-dependent DNA helicase RecG [uncultured prokaryote
           AT3]
          Length = 695

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 237/673 (35%), Positives = 357/673 (53%), Gaps = 27/673 (4%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
             L+K+         R ID   + P  + D      +++      VT         + Q 
Sbjct: 28  AKLAKL------GLHRAIDCALHLPLRYEDETVVVAVADAPFGE-VTQVEVTVDEVTVQF 80

Query: 85  QKRRPYKILLNDGTGEITLLFFYRKTEMLKN---VFFEGRKITVTGKIKKLKNRIIMVHP 141
           + RR   +  +D +G + L F        K         R++ + G+++       MVHP
Sbjct: 81  RPRRQLVVRCHDDSGPLVLRFINFYGSQTKQFEGARDLNRRLRLFGEVRAGFFGDEMVHP 140

Query: 142 HYIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200
                       P  +  VY    GLS    +KII ++L+++ + P  +  D   +   P
Sbjct: 141 RVRLVAENHAELPDRLTPVYPTTAGLSQAALRKIIGKSLAQVDLSP-TLPADSAPE--LP 197

Query: 201 SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
           ++ +A   +H P    D     E T P   RL ++EL+A Q++L       ++    P+ 
Sbjct: 198 AVDQAVRYLHAPPPDADVTTLQEHTHPCWRRLKFEELVAQQLSLKRAYLARRERGAPPLL 257

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             G+I   +L ++PF  T +Q+   +++  D+   + M R+LQGDVGSGKT+VA +A   
Sbjct: 258 PTGEITNALLASLPFQLTAAQQRVWQELRTDLVTPHPMQRLLQGDVGSGKTVVAALAACQ 317

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           A+EAG QA  MAP  ILA+QHY+ +  +     I V  + G++  A ++  L +     A
Sbjct: 318 AIEAGYQAAFMAPTEILAEQHYQKLAGWLTPLGISVLWLAGSLKAAEKK--LRQAEAAHA 375

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIP 432
            +I+GTHAL QD++ + +L + IVDEQHRFGV QRL L +K       PH L+M+ATPIP
Sbjct: 376 QLIVGTHALIQDAVDFSRLGIAIVDEQHRFGVAQRLALRKKGAHAGSAPHQLMMSATPIP 435

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL +T   D+D+S + E P GR PI+T ++   R  EVIER++   +EG++ YW+CP I
Sbjct: 436 RTLAMTYFADLDVSVLDELPPGRTPIRTKLVSDARRGEVIERIRTACAEGRQVYWVCPLI 495

Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           EE +  + +  ++    L E     ++ ++HGR+   +K   M  F  G  ++L+ATTVI
Sbjct: 496 EESEAIDLQPAIDTHALLTEALPEFAVGLVHGRLKADEKAWAMAEFNAGRTQVLVATTVI 555

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           EVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S CIL+Y  PLS+ +  RL ++
Sbjct: 556 EVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGTADSVCILIYAAPLSQTARERLKII 615

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
               DGF IA  DL  R  GE +G +QSG P    A  E    L E AR  A+ +L  DP
Sbjct: 616 YENTDGFEIARADLHLRGPGEFIGHRQSGAPLLRYADLETDVDLAERARDLAERLLRADP 675

Query: 672 DLTSVRGQSIRIL 684
             T+ R    R L
Sbjct: 676 A-TAERHLQ-RWL 686


>gi|219854623|ref|YP_002471745.1| hypothetical protein CKR_1280 [Clostridium kluyveri NBRC 12016]
 gi|219568347|dbj|BAH06331.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 682

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 222/664 (33%), Positives = 367/664 (55%), Gaps = 20/664 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
           +  + + +GVG   +  L+      +      +DLL Y P  +        ++++     
Sbjct: 7   YDDIKSIKGVGAVTAGTLN------SCCIFNILDLLLYFPRDYEIISNCSDLNKVGTG-K 59

Query: 70  VTITGYISQH-SSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           V +   +       + + ++    ++  + +G     +F +    +KN F   +   + G
Sbjct: 60  VIMDCRVKSIGKDIRTKSKKILSTVVFENESGTFQGKWFNQ--PYMKNKFKINKVYRIMG 117

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           KI++    I +++P  + +         I  +Y L +G++ ++  K+I + +  +  + E
Sbjct: 118 KIERFNGSISIMNPTLVSNEVNSKKEDKIIPIYPLKSGITNNILIKLISKVIHEVD-IEE 176

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-Q 246
            +   +++K  F S+ +A   IH P   ++ E     + RL + EL +  + +L+++   
Sbjct: 177 NLPTWIIKKYKFCSLNKAIKAIHKPGSIEELEEA---KRRLKFQELFSYSLKILMLKNYH 233

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            + + GI   +  +  +++ + IP+  TKSQ   I++IL D   ++ M R+LQGDVGSGK
Sbjct: 234 SRNKKGIAFKIASE-LKELKKRIPYELTKSQNKVIREILLDEKMESPMNRLLQGDVGSGK 292

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA+IA+   V+ G QAV MAP  ILA+QHYE  KK+ Q+T + ++++ G++ + +++ 
Sbjct: 293 TIVAIIAIFNVVKNGYQAVFMAPTEILAKQHYEECKKFLQDTGVNIQLLCGSVTERNKKI 352

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E + +G+  IIIGTHAL +D +++  + +V+ DEQHRFGV QR KL  K      L+M
Sbjct: 353 LKEDLKYGKIDIIIGTHALIEDDVEFKNIGMVVTDEQHRFGVAQRSKLINKGKYVDTLVM 412

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L   GD++IS I E P GRK I T        D V +     + +G++ Y
Sbjct: 413 TATPIPRTLSLCLHGDLNISIIDELPPGRKKIHTYYTDKKSKDRVYKFAVEEIKKGRQVY 472

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP +E+    +  SV E ++ L E +     I +++G+MS   KE  M+ FKNG  K 
Sbjct: 473 VVCPLVEQNDNLHLSSVKEIYDKLKEKYFKDLEIGVLYGKMSSSSKEETMNKFKNGEIKA 532

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           +I+TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRGE  S CIL+         
Sbjct: 533 IISTTVIEVGVNVPNAAVMIIENAERFGLAQLHQLRGRVGRGEYKSYCILIADIKNDFV- 591

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ ++K++ DGF IAEEDLK R  GEI G KQ G  + + +       + ++A  +AK
Sbjct: 592 RRRMEIMKSSNDGFFIAEEDLKIRGSGEIFGFKQHGENELIFSNLSEDIHIFKLANLEAK 651

Query: 665 HILT 668
             L 
Sbjct: 652 RFLE 655


>gi|298245570|ref|ZP_06969376.1| ATP-dependent DNA helicase RecG [Ktedonobacter racemifer DSM 44963]
 gi|297553051|gb|EFH86916.1| ATP-dependent DNA helicase RecG [Ktedonobacter racemifer DSM 44963]
          Length = 913

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 227/731 (31%), Positives = 359/731 (49%), Gaps = 58/731 (7%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L A ++   GVG      L  +            DLLFY P    D      I ++ 
Sbjct: 192 LTLLSADVNAVPGVGPTTLKHLHHL------GIHTVHDLLFYFPREHRDYSKITPIVDVP 245

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKI-LLNDGTGEITLLFFYRKTEMLKNVF--FEGRK 122
              + T  G I + +  + +  +   I  ++D +G++   +F +    L+      +G  
Sbjct: 246 FNEVSTTMGLIWEVTVKRTRGNQSRTIATISDDSGKLYATWFNQ--PYLQKQLERAQGCY 303

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDV-NFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           I +TGK ++  N++      +      D+ N   +   Y+L  GLS  + ++     + R
Sbjct: 304 IVITGKKQRFGNKVEFNVQSHELPEQNDLLNTGRLVPTYALTAGLSAKVLRRFTKWVVDR 363

Query: 182 LPVL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
              + P+ +   +        ++EA   IH P   ++ +       RLA+DEL   Q+ +
Sbjct: 364 YAQMVPDHLPTPIRDMGQLIPLSEAVAKIHYPDNEEERQRAY---RRLAFDELFMIQLGM 420

Query: 241 LLMRKQFK-----------KEIGIPINVEGKIAQ-------------------------- 263
              R++++               I I      +Q                          
Sbjct: 421 QERRERWQFEAPQGNALTIYPDKIFIGPPADESQDTPPTSGTTISNIGIGSTLWSVTATD 480

Query: 264 -KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
             +   +PF  T +Q   I +I  DM++   M R+LQGDVG+GKT VA   +  AV  G 
Sbjct: 481 APLEATLPFHYTDAQCRVINEIFIDMAKSKPMCRLLQGDVGAGKTAVAAAGLFMAVLNGS 540

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  IMAP  +LA+QH   I K  +   I   ++TG+   + R +    +  G+A + IGT
Sbjct: 541 QGAIMAPTELLAEQHARSISKMLEPFGIRTVLLTGSQRASERARGRAMLESGEAAVAIGT 600

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           HAL QD +++YKL LVIVDEQHRFGV+QR  L +K   PH+L+MTATPIPRTL LT  GD
Sbjct: 601 HALIQDDVKFYKLGLVIVDEQHRFGVEQRDALRKKGYHPHMLVMTATPIPRTLSLTLYGD 660

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +D+S I + P GR+ I +      R  E  + ++  + EG +A+ ICP IEE +    ++
Sbjct: 661 LDVSVIDQLPPGRQKIISRWRTGARRAESYDTIRQQVEEGHQAFIICPLIEESESLQVKA 720

Query: 503 VVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
               +  L         + ++HG M   +K+ VM  F++    +L+AT+VIEVGIDV +A
Sbjct: 721 ATTEYERLQREVFPTLRLGLLHGAMKPAEKDQVMHRFRDHKLDILVATSVIEVGIDVPNA 780

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           ++++IE+A+ FGL+QLHQ RGRVGRG+  S C +L        S  RL V +  +DGF +
Sbjct: 781 TVMVIEDADRFGLSQLHQFRGRVGRGKHQSYCYVL-SEDAGAQSQERLGVFEEIDDGFKL 839

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
           AEEDL+ R  G+ +G++QSGMP+  IA       ++E+ R+ A  +   DP L      +
Sbjct: 840 AEEDLRLRGPGDFIGVRQSGMPEMRIADLS-DTRMIELTRRIAASVWAGDPYLRKPEHTA 898

Query: 681 IRILLYLYQYN 691
           +R  ++L+  +
Sbjct: 899 LRERMHLFWQD 909


>gi|288800335|ref|ZP_06405793.1| ATP-dependent DNA helicase RecG [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332548|gb|EFC71028.1| ATP-dependent DNA helicase RecG [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 701

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 232/690 (33%), Positives = 372/690 (53%), Gaps = 24/690 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L   +   +GVG K    LS  +         + DLL Y+P  ++DR     + E++ 
Sbjct: 3   NILEQDIMYLQGVGPKRKDILSSEL-----GIKTWGDLLEYYPYKYVDRSKIYAVHELTG 57

Query: 67  ERI-VTITGYISQHSSFQLQ-KRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKI 123
           +   V I G I     F++  +R+         TG  + L++F +  + ++  +    + 
Sbjct: 58  DMPFVQIKGRILSFEEFEMGARRKRLVAHFRGSTGGVVDLVWF-QGAQYIRKTYNLNDEY 116

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEA 178
            V GK      R    HP         +    ++  Y         GL     +KI    
Sbjct: 117 LVFGKPTFYNGRYQFTHPEIEKVGEVQIETMRMQPYYITTEKMKKAGLQSRAIEKITRML 176

Query: 179 LSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           + ++P   LPE +   + ++    S  EAF  IH P    D +     + RL ++EL   
Sbjct: 177 VDKIPQEALPETLPTFITERLHLVSRYEAFRNIHYPTSLTDVQNA---QLRLKFEELFFV 233

Query: 237 QIALLLM-RKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRM 294
           Q+ +L    +  +K  G  +   G         N+PF  T +Q+  +K+I  DM    +M
Sbjct: 234 QLNILRYSTEHRRKYRGYLLPKVGHFFNTFYTNNLPFPLTNAQKRVMKEIRSDMITGRQM 293

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVGSGKTLVAL+ M  A++   QA +MAP  ILA+QH+  I  + ++  + VE+
Sbjct: 294 NRLLQGDVGSGKTLVALMTMLIAIDNDFQACLMAPTEILAEQHFTTIVSFLKSLDVQVEL 353

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TGN+    R++ L R+  G+  +++GTHA+ +DS+Q+ +L + +VDEQHRFGV QR K+
Sbjct: 354 LTGNVKGKKRQEILTRLEKGEIQMLVGTHAVIEDSVQFARLGVAVVDEQHRFGVAQRAKM 413

Query: 415 TQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             K A  PHVL+MTATPIPRTL +T  GD+D+S I E P GRKPI+T+     +   + +
Sbjct: 414 WAKSAQPPHVLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIETIHKYDTQTVSLYD 473

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKES 532
            ++  +++G++ Y + P I+E ++++ +S+   F +L E F    ++ +HG+M   +KE 
Sbjct: 474 GIRKQVAQGRQVYIVFPLIKESEKTDLQSLETGFENLKEVFPNFKMSKVHGKMKPKEKEE 533

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M+ F  G  ++L+ATTVIEVG++V +A++++I  A+ FGL+QLHQLRGRVGRG + S C
Sbjct: 534 EMNRFVKGETQILVATTVIEVGVNVPNATVMVILEAQRFGLSQLHQLRGRVGRGGDQSYC 593

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPEL 651
           IL+ +  LS ++  R+ ++  T DGF IAE DLK R  G++ G +QSGM     IA    
Sbjct: 594 ILVTNYKLSADTKKRIDIMCATNDGFQIAEADLKLRGPGDLEGTQQSGMAFDLKIANIAR 653

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
              L+++AR +A  ++  D          +
Sbjct: 654 DGQLVQMARTEALRVVDNDEHFDKPEYAML 683


>gi|297202618|ref|ZP_06920015.1| ATP-dependent DNA helicase RecG [Streptomyces sviceus ATCC 29083]
 gi|197713193|gb|EDY57227.1| ATP-dependent DNA helicase RecG [Streptomyces sviceus ATCC 29083]
          Length = 742

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 226/750 (30%), Positives = 368/750 (49%), Gaps = 64/750 (8%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P+   PL  PL     +G   +  +++ +           DLL ++P  + +R     ++
Sbjct: 5   PALEEPLEQPLKAV--LGPATAKVMAEHL-----GLHSVGDLLHHYPRRYEERGQLTHLA 57

Query: 63  EISEERIVTITGYISQHS-------SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKN 115
           ++  +  VT+   ++               K +  ++ + DG+G + L+FF         
Sbjct: 58  DLPMDEHVTVVAQVADARLHTFASAKAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHK 117

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF--------PLIEAVYSLPTGLS 167
               G +    GK+     R+ + HP Y      D             +  +Y     L 
Sbjct: 118 ELLPGTRALFAGKVSLFNRRLQLAHPAYELLRGADDEAAETVESWAGALIPLYPATAKLE 177

Query: 168 VDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER 227
                K I   L       + + + L + +    + EA   IH P    D         R
Sbjct: 178 SWKIGKAIQTVLPSAQEAIDPLPQSLREGRGLLPLPEALLKIHRPHTKADIADAHA---R 234

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQ 286
           L +DE    Q+AL   R+   +   +P               +PF+ T  Q+   K+I  
Sbjct: 235 LKWDEAFVLQVALARRRRADAQLPAVPRKPAPDGLLSAFDDRLPFTLTDGQQKVSKEIFD 294

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           D++  + M R+LQG+VGSGKTLVAL AM A V+AGGQA ++AP  +LAQQH+  I +   
Sbjct: 295 DLATDHPMHRLLQGEVGSGKTLVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSIVEMMG 354

Query: 347 NT-----------QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
                           V ++TG+M  A RR+A+  +  G+A I+IGTHAL +D +Q++ L
Sbjct: 355 ELAEGGMLGGSEQGTKVVLLTGSMGTAARRQAMLDLVTGEAGIVIGTHALIEDKVQFHDL 414

Query: 396 ILVIVDEQHRFGVQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            LV+VDEQHRFGV+QR  L  +    PH+L+MTATPIPRT+ +T  GD++ S + + PAG
Sbjct: 415 GLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAG 474

Query: 455 RKPIKTVIIPINRID----EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER---- 506
           R PI + ++P            ER++  +  G +AY +CP+I ++++   +S  ++    
Sbjct: 475 RSPIASHVVPAADKPHFLTRAWERVREEVENGHQAYVVCPRIGDEEDDPKKSAKQKSAED 534

Query: 507 -------------FNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                         + L +   S   + ++HGRM   DK++VM  F  G   +L+ATTVI
Sbjct: 535 EAEKRPPLAVLDIADQLVKGPLSGLRVEVLHGRMHPDDKDAVMRRFAAGETHVLVATTVI 594

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           EVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG     C+L+   P +  +  RL+ +
Sbjct: 595 EVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEMPEASPARQRLNAV 654

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQD 670
            +T DGF ++  DL+QR+EG++LG  QSG      +      + ++  AR++A  ++  D
Sbjct: 655 ASTLDGFELSRIDLEQRREGDVLGQAQSGARTSLRVLAVIEDEEIIAEARQEATAVVEAD 714

Query: 671 PDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           P+LT + G  +R  L      E  Q++  G
Sbjct: 715 PELTELPG--LRTALDALVDEEREQYLEKG 742


>gi|124268921|ref|YP_001022925.1| ATP-dependent DNA helicase RecG [Methylibium petroleiphilum PM1]
 gi|124261696|gb|ABM96690.1| putative ATP-dependent DNA helicase [Methylibium petroleiphilum
           PM1]
          Length = 665

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 232/646 (35%), Positives = 354/646 (54%), Gaps = 14/646 (2%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN 95
               R IDL  + P  + D      I+   E   V + G + + S  +L+ RR   + L 
Sbjct: 4   LGLVRDIDLALHLPLRYEDETRVTPIAAAHEGETVQVEGRV-RDSRVELRPRRQLIVRLA 62

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL 155
           D + E+ L F +      K     G ++ V G+++       MVHP +   N        
Sbjct: 63  DDSDELVLRFLHFYPSHQK-TLAVGARLRVRGELRGGFLGREMVHPSFKAVNDDTPLATA 121

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
           +  VY     L     +K +  AL+R P L E +    +     PS+ +A   +H+P   
Sbjct: 122 LTPVYPASAQLPQAYLRKAVSSALTRAP-LDELLPPGSVPA-GLPSLKQALLFLHHPAPE 179

Query: 216 KDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIP 270
                  + + PA +RL +DELLA Q++ L  +++       P+    G + +++L  +P
Sbjct: 180 VMLATLEDHSHPAWQRLKFDELLAQQLSQLQAQRERAALRAPPLRAGAGGLHEQLLAALP 239

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T +Q    ++I +D+++ +   R+LQGDVGSGKT+VA +A   A++AG Q  +MAP 
Sbjct: 240 FRLTGAQHRVTEEIARDLARPHPTHRLLQGDVGSGKTVVAALAATVAIDAGWQCALMAPT 299

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA+QH+  +  + +   + +  +TG+     R + LER+A G+A +++GTHA+ QD +
Sbjct: 300 EILAEQHFRKLVGWLEPLGVPIAWLTGSQKGKARTRMLERVASGEARLVVGTHAVIQDRV 359

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            + +L L ++DEQHRFGV QRL+L +K       PH+L+M+ATPIPRTL +T   D+D+S
Sbjct: 360 VFERLGLAVIDEQHRFGVAQRLQLKRKLEGTPLEPHLLMMSATPIPRTLAMTYYADLDVS 419

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            + E P GR PI T +    R D VI R++  +++G++ YW+CP IEE +  + ++  E 
Sbjct: 420 TLDELPPGRTPIVTKVFADGRRDSVIARIRDEVAKGRQVYWVCPLIEESETLDLQNATET 479

Query: 507 FNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
              L E      + ++HGRM   +K +VM  F  G   +L++TTVIEVG+DV +AS+++I
Sbjct: 480 HARLGEALPGVQVGLLHGRMPAAEKAAVMARFTGGELAVLVSTTVIEVGVDVPNASLMVI 539

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           E+AE FGL+QLHQLRGRVGRG   S C+LLY PPLS     RL  +  T DGF IA  DL
Sbjct: 540 EHAERFGLSQLHQLRGRVGRGSVASVCVLLYTPPLSDTGKARLRAMAETNDGFEIARRDL 599

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
             R  GE +G +QSG      A      +LL  AR+ A  +L   P
Sbjct: 600 DIRGPGEFMGARQSGAALLRFADLAEDSALLAQARQLAPQLLEHHP 645


>gi|325913467|ref|ZP_08175833.1| ATP-dependent DNA helicase RecG [Lactobacillus iners UPII 60-B]
 gi|325477236|gb|EGC80382.1| ATP-dependent DNA helicase RecG [Lactobacillus iners UPII 60-B]
          Length = 673

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 219/694 (31%), Positives = 356/694 (51%), Gaps = 33/694 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  L ++            DLLFY P  + D      ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALLQLK------IKTIYDLLFYFPRRY-DSLETFPLNELK 58

Query: 66  EERIVTITGYISQHSSFQLQK----RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I              R  +K+ ++     I + FF +    LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDHD--IIMVNFFNQ--PWLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS- 180
            I + GK       +       I    +       E VYSL + +        I +A+  
Sbjct: 115 DIAIYGKYVLASQTLSAYK---IVLKEE-----GFEPVYSLNSHIKQKKLVSFINQAIEK 166

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-A 239
            LP LPE I + L  K     +      +H P   KD +    A+    + E    Q+  
Sbjct: 167 YLPQLPEVIPQYLRDKYKLLDVQSMIIQMHQP---KDLQQVKVAQRTAIFLEFFVFQLQL 223

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   RM R+LQ
Sbjct: 224 SQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKRMNRLLQ 283

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   ++T + 
Sbjct: 284 GDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSST 343

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L  K  
Sbjct: 344 KLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGK 403

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++  +   L
Sbjct: 404 MVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQL 463

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
            +G + Y + P I E  + + ++    +  +  +F +  +A++HG+M    K  +MD+F 
Sbjct: 464 EQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSDIMDAFI 523

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S CI +  P
Sbjct: 524 HGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYCIFVSDP 583

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             + ++  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     + ++   
Sbjct: 584 K-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINNYNIFTT 642

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           A+K++K ++ Q+P+L       +++   L +Y++
Sbjct: 643 AQKESKILVHQNPELVGEEYDFLKL---LMEYDD 673


>gi|184153750|ref|YP_001842091.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri JCM 1112]
 gi|227363189|ref|ZP_03847323.1| DNA helicase RecG [Lactobacillus reuteri MM2-3]
 gi|325682706|ref|ZP_08162222.1| DNA helicase RecG [Lactobacillus reuteri MM4-1A]
 gi|183225094|dbj|BAG25611.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri JCM 1112]
 gi|227071795|gb|EEI10084.1| DNA helicase RecG [Lactobacillus reuteri MM2-3]
 gi|324977056|gb|EGC14007.1| DNA helicase RecG [Lactobacillus reuteri MM4-1A]
          Length = 690

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 229/695 (32%), Positives = 365/695 (52%), Gaps = 22/695 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L   ++  +GVG K    L+ +            DLL Y+P+ + D      I    
Sbjct: 13  LRSLTDSVANLKGVGPKRVADLATL------GIDTIEDLLTYYPTRYNDFT-PTDIESAK 65

Query: 66  EERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           +++ +T+ G +           +R      +  G   +   FF +    +K      +++
Sbjct: 66  DKQKITLQGVVVSEPLLVRYGYRRNRLTFRMQVGNEVVIATFFNQ--PYIKKQIELNQQV 123

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           TV GK    + ++            +  +     AVY++   +  ++ +  I +A     
Sbjct: 124 TVMGKWDAPRRQVTGN----KLLKEKADDRNEFGAVYAVNKHIRQNVLQSFIRQAYEEYA 179

Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            ++P ++ + + Q+       +    IH P+     +         AY+E    Q+ L  
Sbjct: 180 NIIPTYLPETIRQRYRLMDRRQMIREIHFPQTQATAKAARRT---AAYEEFFLFQLRLQA 236

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  ++E G  I       ++ +  +PF  T +Q+  + +I +DM Q  +M R+LQGDV
Sbjct: 237 IRRAHRQEDGERILYHNDELKEFIGGLPFELTDAQKRVVNEICRDMRQPYQMNRLLQGDV 296

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA IA+ AA+ AG QA +MAP  ILA QH + + K  + T + V ++TG++   
Sbjct: 297 GSGKTIVAAIAIYAAITAGYQAALMAPTEILAGQHAKKLAKIFEGTHVQVALLTGSLTAK 356

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
             R+ L  +  G  ++I+GTHAL QD ++Y  L LVI DEQHRFGV QR +L +K   P 
Sbjct: 357 QHRELLTAMKRGDVNLIVGTHALIQDGVEYANLGLVITDEQHRFGVNQRQQLREKGEHPD 416

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL +T+ G++D+S I + PAGRKPI+T  +  N+    I  L+  L +G
Sbjct: 417 VLAMTATPIPRTLAITNYGEMDVSIIDQLPAGRKPIQTKWLQSNQHAAAIHFLREQLKQG 476

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540
            +AY + P IEE    + ++  + +N L         + ++HGRM   +K+  M  FK+G
Sbjct: 477 AQAYVVSPLIEESAALDVQNATDLYNQLSADLEPAYKVGLLHGRMGTEEKDEAMRQFKSG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+D  +A++++I +A+ FGLAQLHQLRGRVGRG   S C+L+  P  
Sbjct: 537 ELQVLVATTVIEVGVDNPNATVMVIYDADRFGLAQLHQLRGRVGRGSRQSYCLLIADPK- 595

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +     R+  +  T+DGF IAE+DLK R  G++LG KQSGMP+F +  P     +L+IAR
Sbjct: 596 TDEGKARMKTMVATDDGFKIAEQDLKLRGSGDVLGKKQSGMPEFKVGDPVADLKMLQIAR 655

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
            DA ++L           Q + + L  ++    F 
Sbjct: 656 ADAGNLLGMSKWDQVDENQPLVLYLKRHELETHFD 690


>gi|317969805|ref|ZP_07971195.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CB0205]
          Length = 811

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 235/714 (32%), Positives = 379/714 (53%), Gaps = 30/714 (4%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           R   + P   PLS  RGVG K +  L+ +      +     DL+ Y+P  ++D     +I
Sbjct: 108 RSQTIQP-DTPLSEVRGVGPKSATRLAAL------DLWLARDLVRYYPRDYLDYANLVRI 160

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM------ 112
           + +   +  TI   + +  SF   +     IL   L D TG I +  F+           
Sbjct: 161 AGLEPGKTATIVATVRRSHSFTSPRNPNLSILELHLADITGRIRVSKFFAGKRFSSPAWL 220

Query: 113 --LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-----FPLIEAVYSLPTG 165
              +  +  G  + ++G +K+         P      S + +        +  VY L  G
Sbjct: 221 KAQQRNYPVGASVAISGLVKETPYGPAFQDPLMEVLESPNASVRSDQIGRLLPVYGLTEG 280

Query: 166 LSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225
           L+ D  + +I   ++      + +   L  ++    + EA   IH P            R
Sbjct: 281 LTADRLRNLIRPVVAAAGQWGDPLPASLQAREGLVPLPEALLQIHGPTSQASLSEA---R 337

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-PFSPTKSQESAIKDI 284
            RL +DE L  Q+ LL  R+Q        + VEG    +    + PF  T +Q+  + +I
Sbjct: 338 HRLVFDEFLLLQLGLLQRRRQLTSRPAPALAVEGDALLQAFLQLLPFPLTGAQQRVLAEI 397

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
             D+ +   M R++QGDVGSGKT+VA+ A+  A+++G Q  +MAP  +LA+QHY  + ++
Sbjct: 398 RADLRRDQPMARLVQGDVGSGKTVVAIAALLTAIDSGCQGALMAPTEVLAEQHYRKLCEW 457

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                +   ++TG+ P   RR+ L  +A+G   +++GTHAL +D +Q+ +L LV+VDEQH
Sbjct: 458 LPQLHVTCALLTGSTPLRRRRELLADLANGTLKMLVGTHALLEDPVQFQRLGLVVVDEQH 517

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           RFGV QR +L  K   PH+L MTATPIPRTL L+  GD+++S+I E P GR PI+T ++ 
Sbjct: 518 RFGVHQRNRLLDKGLQPHLLTMTATPIPRTLALSIHGDLEVSQIDELPPGRTPIRTSLLA 577

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIH 522
               DE    ++  ++ G++AY + P +EE ++ + RS V+    L E    +  + ++H
Sbjct: 578 SADRDEAYSLIREQVALGQRAYVVLPLVEESEKLDLRSAVDVHQQLSEQVFPNLQVGLLH 637

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GRM   DK++ + +F +G  ++L++TTV+EVG+DV +AS+++I++A+ FGLAQLHQLRGR
Sbjct: 638 GRMPSADKQAAITAFASGETQVLVSTTVVEVGVDVPEASVMVIDHADRFGLAQLHQLRGR 697

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
           VGRG   S C LL +   +  +  RL VL  + DGF IAE DL+ R  G++LG +QSG+P
Sbjct: 698 VGRGAAASYC-LLVNDSRNVLARQRLEVLVRSNDGFEIAEMDLRLRGPGQVLGTRQSGLP 756

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
              +A       +LE AR+ A+ I+ +DPDL    G +  +    ++  +A + 
Sbjct: 757 DLALASLTDDGEVLEQARRVAQEIVAEDPDLDQHPGLAKVLSDQRHRVAQAARL 810


>gi|304437335|ref|ZP_07397294.1| DNA helicase RecG [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369591|gb|EFM23257.1| DNA helicase RecG [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 706

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 237/667 (35%), Positives = 359/667 (53%), Gaps = 32/667 (4%)

Query: 1   MRPSFLNP------LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID 54
           MR  FL        L   ++  RGVG K +  L+++            DLL ++P ++ D
Sbjct: 7   MRQPFLKEWRKRVNLTDSVNAVRGVGVKKAALLARL------GVRTVYDLLTFYPRAYED 60

Query: 55  RHYRPKISEISEERIVTITGYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEM 112
           +    +I +++     T+ G I Q    Q ++R       L+ DGTG    ++F ++   
Sbjct: 61  QSRITRIMDLAAGTRATVHGVIQQVVERQTRRRGFTVLTALVGDGTGYAQAVWFNQR--F 118

Query: 113 LKNVFFEGRKITVTGKIKKLKNR-----IIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGL 166
           LK     G++I +TGK+              V    +  + +D    L I  VY+   GL
Sbjct: 119 LKGKLRAGQRILLTGKVDYAYGGGGQMAFSPVTSFALLGSQEDATAHLGILPVYAATEGL 178

Query: 167 SVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225
           +    +++  + L+     L E + + +  +      A AF  IH P   KD E  + AR
Sbjct: 179 TQKQLRQMTADVLAHAGEALMETLPEQIRAEYHLIGRAAAFRQIHFP---KDTEELAAAR 235

Query: 226 ERLAYDELLAGQIALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
            RLA++EL   Q  LL ++KQ  + E GI     G +  ++   +PF+ T+ QE    +I
Sbjct: 236 RRLAFEELYLIQCGLLALKKQTAEHEEGIAHRANGALIARVRDALPFALTEDQEKVWAEI 295

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
            +DM     M R++QGDVGSGKT +AL+A+   VE+G Q  +MAP  ILA+QHY+ +++ 
Sbjct: 296 SRDMEAPLPMRRLVQGDVGSGKTAIALLALVKTVESGCQGALMAPTEILARQHYDGLREL 355

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                I V  ++G + +    + L  +A  +  IIIGTHAL Q+ + +  L LV+ DEQH
Sbjct: 356 LTPLGIRVGFLSGRLTKKEHTEVLSALAAHEIDIIIGTHALIQEGVAFDSLGLVVTDEQH 415

Query: 405 RFGVQQRLKL-TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           RFGV QR  L  +    P VL+MTATPIPRT+ LT  GD+D+S+I   P GR+PI+T + 
Sbjct: 416 RFGVAQRSALEKKSGVVPDVLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRQPIRTFLR 475

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE--HFTSSIAII 521
                 ++   ++  +  G++AY +CP IE  +ES+  S  E +  L           ++
Sbjct: 476 DETARAKIYAFVRREIERGRQAYVVCPLIEANEESDLPSAEEVYAELSRGSFCGIRCGLV 535

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HGR+   DKE+VM  F  G  KLL+ATTVIEVG++V +A+++++E+AE FGLAQLHQLRG
Sbjct: 536 HGRLKAADKEAVMRGFYAGEIKLLVATTVIEVGVNVPNATVLVVEHAERFGLAQLHQLRG 595

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           RVGRG + S CIL+    ++     RL V++ T DGF +AEEDL+ R  G+  G  Q G+
Sbjct: 596 RVGRGSDASYCILIAGRQVA--GAERLRVIEETSDGFRLAEEDLRLRGPGQFFGAMQHGL 653

Query: 642 PKFLIAQ 648
               IA 
Sbjct: 654 GDLKIAD 660


>gi|331701488|ref|YP_004398447.1| ATP-dependent DNA helicase RecG [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128831|gb|AEB73384.1| ATP-dependent DNA helicase RecG [Lactobacillus buchneri NRRL
           B-30929]
          Length = 676

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 228/696 (32%), Positives = 358/696 (51%), Gaps = 30/696 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   +   +GVG+K     +K+            DLL Y+P  + D      +    
Sbjct: 1   MASLSDSVGVLKGVGEKRLTAFNKL------GINTINDLLTYYPRRYDDLS-LKDLRTAV 53

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKI----LLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + VT+ G +    + +   RR  ++     +ND    +T  FF +    LK       
Sbjct: 54  DGQKVTVKGIVISEPTVRFFGRRKSRLGFHLKINDEIYNVT--FFNQ--PWLKKQLELEA 109

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           ++ + G   + +N+I  +       N +  +    +++Y     +  +  K++I      
Sbjct: 110 QVIIFGTFDRNRNQIQGM----KILNGEKSDT--YDSIYPSNKEVKQNTIKQLIKLGFDE 163

Query: 182 L-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
               L + I + +  K    S  +    IH P            R     +  L      
Sbjct: 164 YQDQLVDVIPESIRTKYRLESFHDTIQNIHFPTSP--VAAQKAFRTAKFMEFFLFAMKIQ 221

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           +L ++  K +    +  +  +  +    + F  T SQ   + +IL D+ +   M R+LQG
Sbjct: 222 ILKQRHRKPDPAAKVTYDPDLVGQFTSQLKFKLTDSQNKVVNEILTDLGKPLEMNRLLQG 281

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA IA+ AA+ AG QA IMAP  ILA+QH     K  +   I + ++TG   
Sbjct: 282 DVGSGKTVVAAIAILAAISAGKQAAIMAPTEILAEQHANTFAKLFEKFDINIALLTGATT 341

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R+  L RIA G+ ++I+GTHALFQD + Y+ L L ++DEQHRFGV QR  L  K  +
Sbjct: 342 GLARKAMLPRIADGEVNLIVGTHALFQDQVDYHDLGLAVIDEQHRFGVNQRQALRLKGNS 401

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            ++L MTATPIPRTL +T  GD+D+S I E P GRKPIKT  I   + D  I  +K  L 
Sbjct: 402 TNMLAMTATPIPRTLAITMYGDMDVSVIDELPKGRKPIKTTWITSAKTDSAIRFVKKQLD 461

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFK 538
            G + Y + P IEE +  + ++ +  F+     F    S+ ++HGRMSD +K++ M  FK
Sbjct: 462 AGNQVYVVTPLIEESEAVDMKNAMAIFDRFKAIFEPQYSVGLLHGRMSDEEKDTAMADFK 521

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N   ++L+ATTVIEVG+DV +A+ ++I +A+HFGLAQLHQLRGRVGRG+  S CIL+  P
Sbjct: 522 NNQFQVLVATTVIEVGVDVTNANTMLIFDADHFGLAQLHQLRGRVGRGDTQSYCILIADP 581

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             ++    R++ + ++ DGF ++++DL+ R +G+I G KQSGMP F +A P    ++L++
Sbjct: 582 K-NELGKKRMTAVASSTDGFFLSQKDLELRGQGDITGSKQSGMPDFKVADPVGDLNILQV 640

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           A ++A+ I              +   L   +YNE  
Sbjct: 641 ANQEAQSITVHQDWQKQPENVQLSQYL---KYNETI 673


>gi|296270745|ref|YP_003653377.1| ATP-dependent DNA helicase RecG [Thermobispora bispora DSM 43833]
 gi|296093532|gb|ADG89484.1| ATP-dependent DNA helicase RecG [Thermobispora bispora DSM 43833]
          Length = 725

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 237/730 (32%), Positives = 377/730 (51%), Gaps = 55/730 (7%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   G   + +  L               +LL ++P  +  R     I+ +     VT
Sbjct: 10  PLTRVLG---RTAASLE-----SALGIRTVGELLRHYPRRYAQRGELTPIASLRHGEHVT 61

Query: 72  ITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +S      ++ RR     +++ DGT ++ L FF +     +     G +    GK+
Sbjct: 62  VVGRVSSVMRRPMKNRRGTWLDVVVTDGTDKLHLAFFGKGGHAAEQRLTPGTEAMFAGKV 121

Query: 130 KKLK----NRIIMVHPHYIFHNSQDVNFPLI----EAVYSLPTGLSVDLFKKIIVEALSR 181
                    R+ + HP Y   +               +Y    GL+    ++ +   L  
Sbjct: 122 DVFTTPRTRRVTLTHPEYELFDESGETAEEFAAAPVPIYPSAQGLASWKIRRAVRTVLDV 181

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           L V  + +  ++  ++   ++ EA   IH P    D    +PAR RLA+DE    Q+ALL
Sbjct: 182 LSV-DDPLPAEVRGRQGLVTLEEALRRIHRPASQADI---APARRRLAFDEAFLLQLALL 237

Query: 242 LMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             R    +    P    +G +  +  + +PF  T+ Q    ++I  D+++ + M R+LQG
Sbjct: 238 KRRMTASEWAAKPRPPRDGGLLSEFDKRLPFELTEGQRKVGEEIAADLARPHPMHRLLQG 297

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-------QIIVE 353
           +VG+GKT+VAL AM   V+AGGQA ++AP  +LAQQH+  I     +           V 
Sbjct: 298 EVGAGKTVVALRAMLQVVDAGGQAALLAPTEVLAQQHHRSITNLLGDLATGGVFGGTSVV 357

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+M  A RR AL   A GQA I+IGTHAL Q+ +Q+  L LV+VDEQHRFGV+QR  
Sbjct: 358 LLTGSMGAAARRNALLAAASGQAGIVIGTHALLQEQVQFADLGLVVVDEQHRFGVEQRDA 417

Query: 414 LTQKAT--APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---- 467
           L  KA    PHVL+MTATPIPRT+ +T  GD+++S + + P+GR PI T ++P       
Sbjct: 418 LRMKAREGRPHVLVMTATPIPRTVAMTVFGDLEVSTLAQLPSGRAPIATHVVPAAEKPHY 477

Query: 468 IDEVIERLKVVLSEGKKAYWICPQI--------------EEKKESNFRSVVERFNSLHEH 513
           ++   ER++  ++ G++AY +CP+I              E+++     +V++    L E 
Sbjct: 478 LERAWERIREEVALGRQAYVVCPRIGDQEGGAEEEQATGEDEERRPPLAVLDVARMLGEG 537

Query: 514 F--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 I  +HG +   +K++VM +F  G   +L+ATTVIEVG+DV +AS+++I +A+ F
Sbjct: 538 PLRDLRIGTLHGALPPEEKDAVMRAFSRGEIDVLVATTVIEVGVDVPNASVMVIMDADRF 597

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           G++QLHQLRGRVGRG     C+L+   P    +  RL  +  T DGF ++  DL+QR+EG
Sbjct: 598 GVSQLHQLRGRVGRGRLPGLCLLVTEAPAGTPARRRLDAVAATLDGFELSRVDLEQRREG 657

Query: 632 EILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
           +ILG  QSG      + Q    + L+E AR +A  +L++DP+L      ++R  L     
Sbjct: 658 DILGAAQSGRKSSLKLLQLLRDEDLIETARAEAAELLSRDPELAG--HPALRAELDALLA 715

Query: 691 NEAFQFIRAG 700
           ++  +F+  G
Sbjct: 716 DDRARFLEKG 725


>gi|261854752|ref|YP_003262035.1| ATP-dependent DNA helicase RecG [Halothiobacillus neapolitanus c2]
 gi|261835221|gb|ACX94988.1| ATP-dependent DNA helicase RecG [Halothiobacillus neapolitanus c2]
          Length = 692

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 252/695 (36%), Positives = 383/695 (55%), Gaps = 29/695 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+ +  GVG + +  L ++            DLL++ P  + +R     +      +
Sbjct: 15  LHLPVDSLAGVGPRVAAQLVRLS------IESIGDLLWHLPLRYENRGQIVPLGYHLIGQ 68

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            V I   I++  S    K R       D    ITL  F R           G+   + G+
Sbjct: 69  SVLIHVTIAEAKSLMRGKARQ-VAQGYDDAASITLWQFGRFGP----TLQTGQSYLLFGE 123

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLPE 187
           +++  + + M  P  I    Q      I  +Y    GLS    + ++ +AL   L  L E
Sbjct: 124 VREGASGLEMAQPELI----QSAQLEAIVPIYPSTEGLSQSKLRTLVGQALRVALHDLDE 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF-EWTSPARERLAYDELLAGQIALLLMRKQ 246
            +   + Q+  +P++  A   IH P  A        PA  R+  +ELLA  +AL L R +
Sbjct: 180 CLPAPIRQRFGWPTMLAALQRIHAPVLADGVPTRDEPAFARMIGEELLAHLLALRLKRHE 239

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
             ++    ++  G++ Q++L  + F PTK+Q   + +I  DM+Q + MLR++QGDVGSGK
Sbjct: 240 QSRDHAPRLSAPGRLYQELLAQLHFLPTKAQTRVLDEIRADMAQGSPMLRLVQGDVGSGK 299

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVA  A   A+E G Q  +MAP  +LA+QH     ++     I V++++G    + RR 
Sbjct: 300 TLVAAGAALTAIEQGYQVALMAPTALLAEQHQRNFSQWFSPLGIDVQLLSGQQSASERRA 359

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP----- 421
           +L  +A  ++ ++IGTHALFQ+ + + +L LVIVDEQHRFGV QRL L+ K T P     
Sbjct: 360 SLAALAEARSLMVIGTHALFQERVAFDQLGLVIVDEQHRFGVHQRLALSDKGTHPDRAGH 419

Query: 422 --HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
             H L+MTATPIPRTL +++  D+D+S I E P GR PI T ++  +R D++IER+  V 
Sbjct: 420 RPHQLVMTATPIPRTLAMSAYADLDVSIIDELPPGRTPITTALVRSDRRDQLIERISTVC 479

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
           +EG++AYW+CP +E+ +    ++       L E     ++ ++HGRMS  +K + M  FK
Sbjct: 480 AEGRQAYWVCPLVEDSERIEAQAAESTAELLREQLPHLTVGLVHGRMSAAEKNTQMARFK 539

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +    LL+ATTVIEVG+DV +AS++IIENA+  GLAQLHQLRGRVGRG   S C+LL+  
Sbjct: 540 SHEVDLLVATTVIEVGVDVPNASLMIIENADRMGLAQLHQLRGRVGRGRTDSYCVLLFDE 599

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           P+S  +  RLS+++ T+DGF +AE DL QR  GEILG +Q+G+ K  +A       LL+ 
Sbjct: 600 PISDKARARLSLMRETQDGFRLAEADLAQRGPGEILGTRQTGLAKLRVADLVRDADLLDT 659

Query: 659 ARKDAKHIL-TQDPDLTSVRGQSIRILLYLYQYNE 692
           AR+ A  ++  Q PD   ++    R +   +QY +
Sbjct: 660 ARQLADELIAAQSPD---IKPLIQRWVGAAHQYGQ 691


>gi|88811932|ref|ZP_01127185.1| ATP-dependent DNA helicase RecG [Nitrococcus mobilis Nb-231]
 gi|88790816|gb|EAR21930.1| ATP-dependent DNA helicase RecG [Nitrococcus mobilis Nb-231]
          Length = 697

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 240/667 (35%), Positives = 366/667 (54%), Gaps = 23/667 (3%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
            + +  L+++            DLLF+ P  + D      +      +   + G + + +
Sbjct: 20  PRRAARLARL------GIRGVDDLLFHLPLRYEDWSRILPLGRARPGQSALVAG-VVELA 72

Query: 81  SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
                +RR     ++DGTG +TL FF+      K     G ++   G+++     + M H
Sbjct: 73  EVVGGRRRRLLCRISDGTGRLTLQFFHFYPNQRKR-LQAGVRLLCYGEVRSGPLGLQMTH 131

Query: 141 PHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL---PVLPEWIEKDLLQ 195
           P +              +  VY    GL     +++   AL          E + + L +
Sbjct: 132 PQWRVFAPGRPISGEKELTPVYPSTEGLDQASLRRLTRRALEEAMAGRAGVELLPRRLRE 191

Query: 196 KKSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           +   P + EA  ++H P              PA  RL  +ELLA +++LL +R   +   
Sbjct: 192 ELGLPKLIEALRLLHAPPSTASATDLIARRHPAVRRLILEELLAHRLSLLRLRDHRQLAK 251

Query: 252 GIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             P +   G + +  L  +PF  T +Q   ++++ +DM Q   MLR++QGDVG GKT++A
Sbjct: 252 SAPKLQGTGALLEAWLARLPFRLTSAQRRVMREVAKDMGQARPMLRLVQGDVGCGKTVIA 311

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +A    VEAG Q   MAP  +LA+QHY   +++     +    +TG +  + RR+ ++R
Sbjct: 312 ALAALTTVEAGWQVAFMAPTELLAEQHYRTFQRWLAPLGVETAWLTGRLAASSRREHIKR 371

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLM 426
           +A+G+  +++GTHALFQD + +++L L IVDEQHRFGV QRL L  K+      PH L+M
Sbjct: 372 LANGEIRVVMGTHALFQDQVVFHRLGLAIVDEQHRFGVHQRLALKNKSGVEEIQPHQLIM 431

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL +T+  D+D+S I E P GRKPI TV I   R  +VIER++   +EG++AY
Sbjct: 432 TATPIPRTLAMTAYADLDVSVIDELPPGRKPIITVAISDARRGQVIERIRHACAEGRQAY 491

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           W+C ++EE +     +       L E      + ++HGRM  ++KE+VM  F+ G  +LL
Sbjct: 492 WVCTRVEESEACQAEAAEATAQRLRESLPELRVGLVHGRMKGVEKEAVMAGFEAGELQLL 551

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVG+DV +AS++IIENAE FGLAQLHQLRGR+GRG   SSC+L+YH PLS+ + 
Sbjct: 552 VATTVIEVGVDVPNASLMIIENAERFGLAQLHQLRGRIGRGATASSCVLMYHGPLSQTAQ 611

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL++L+ T+DGF IA+ DL+ R  GE+LG +Q+G   + IA       LL   R+ A  
Sbjct: 612 ARLAILRYTQDGFRIAQRDLELRGPGELLGTRQTGELHYRIADLRRDTDLLPDVRRWAAI 671

Query: 666 ILTQDPD 672
           +L   PD
Sbjct: 672 LLRGCPD 678


>gi|149173513|ref|ZP_01852143.1| ATP-dependent DNA helicase RecG [Planctomyces maris DSM 8797]
 gi|148847695|gb|EDL62028.1| ATP-dependent DNA helicase RecG [Planctomyces maris DSM 8797]
          Length = 691

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 228/701 (32%), Positives = 385/701 (54%), Gaps = 22/701 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL  P+    GVG      L K+            DLL++ P S +D      ++E+ E+
Sbjct: 5   PLETPVQFLNGVGPDRGELLGKL------GIQTVEDLLWHLPRSVLDLTDVRPVNELEED 58

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLND-GTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           +  ++ G +    +  + + R    +L D GTG +   +F +    +   FF+G+ +  +
Sbjct: 59  QPASVCGKVVDLDARTISRGRTITAILLDCGTGFLKGTWFNQ--PWVIKRFFQGQLLMFS 116

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           GK K+   +  + HP +       D    LI   YSL  G+ +   ++ +  A+     L
Sbjct: 117 GKPKRRSGKWEISHPQFQVLEEDLDDPQGLILPRYSLTEGIKMYQMRRFVRAAVEEYAQL 176

Query: 186 -PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
            P+++ +   +  S   +++A   +H PR     E       R+ YD+LL  Q+AL L R
Sbjct: 177 IPDYLPESFREAHSLIPLSQAVIQMHKPRT---MEEYHAGVHRVIYDDLLEFQLALALRR 233

Query: 245 KQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           + +      P+  V  K+  +I R  P+  T+ Q  AI++I  D++    M R+LQ DVG
Sbjct: 234 RLWTCVDNAPLVKVTAKVDARIRRLFPYDFTEGQNQAIEEIKTDLASGRAMHRMLQADVG 293

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT +A+ AM A +  G QAV+MAP  +LA QH+E I K  +++++   ++TG++  + 
Sbjct: 294 AGKTAIAIYAMLAMIAGGNQAVLMAPTELLAVQHWETINKILKHSRVKHCLLTGSLSPSE 353

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           R+  LE+IA G+  +I+GT A+ Q  ++Y+ L LVI+DEQH+FGV QR   +     PH+
Sbjct: 354 RKATLEQIASGEQQLIVGTQAVVQKDVRYHNLGLVIIDEQHKFGVMQRAHFSSDQNTPHM 413

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT-VIIPINRIDEVIERLKVVLSEG 482
           L+MTATPIPR+L LT  G++DIS  TE P GR+P+ T  +    +  +  + L+  ++ G
Sbjct: 414 LVMTATPIPRSLCLTQFGELDISVNTELPPGRQPVMTSRVSTTPQRKKAWDFLRTQIAAG 473

Query: 483 KKAYWICPQIEEKKESNFRSVVER-FNSLH--EHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           ++AY +CP+I+ + E N RS  E  +  L   E  T+SI ++HG+M   ++  +M  F  
Sbjct: 474 RQAYIVCPRIDSEDEQNIRSSAEEVYRKLQKSELSTASIGLVHGQMDREERAEIMRQFHQ 533

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GT ++L++TTV+EVG+DV +A++++I  A+ FGL+QLHQLRGRV RG    +C L  +  
Sbjct: 534 GTIQVLVSTTVVEVGVDVPNATLMVILQADRFGLSQLHQLRGRVSRGLHRGNCFLFSYTE 593

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            S+++  RLSV++ T DGF IAE D + R  G+I G +Q G     +A  +   ++L+  
Sbjct: 594 -SEDALNRLSVMEQTTDGFEIAEADFQARGPGDIFGTRQHGELPLRVADLKRDAAILQET 652

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            + A  ++ +  +    R   ++I + L ++ +     ++G
Sbjct: 653 HEVALRLVER-GEFDQPRFAPLKIRV-LERFGQLMDLGQSG 691


>gi|238916890|ref|YP_002930407.1| ATP-dependent DNA helicase RecG [Eubacterium eligens ATCC 27750]
 gi|238872250|gb|ACR71960.1| ATP-dependent DNA helicase RecG [Eubacterium eligens ATCC 27750]
          Length = 685

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 222/680 (32%), Positives = 352/680 (51%), Gaps = 23/680 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE---RI 69
           ++  +G+G K +   +++            DL+  +P  +   H    + +IS E     
Sbjct: 3   ITELKGIGAKTAENFNRLS------VYTVSDLVGLYPRDYDVYHEPVFVKDISHESEHTE 56

Query: 70  VTITGYISQHSSFQLQKR-RPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTG 127
           V + G + +        R +   + + D  G  I   ++      LKN    G +    G
Sbjct: 57  VAVEGQVCKSPDIYGSGRLKILTVTIKDYNGDSIKCSWYN--MPFLKNTLRLGARYVFRG 114

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
           ++   +  + +  P              ++ +Y L  GL+ +   K + +AL +    + 
Sbjct: 115 RLVNKRGWL-LEQPKMYTLAQYKELQGTLQPIYPLTKGLTNNTVTKAVAQALEKYSAGLE 173

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E+I   + ++ S      +   IH P+     E    AR RLA++E     +A L ++ 
Sbjct: 174 KEYIPDYIRKRYSLAEHNFSIVNIHFPKT---MEEYVQARHRLAFEEFFLFTLATLSLKS 230

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             +      +  E K   + L ++ +S T +Q   + ++ QDMS ++   R++QGDVGSG
Sbjct: 231 ANEHIPNSYVIPESKEKDQFLESLSYSLTNAQLRTVSEVAQDMSGEHLCSRLIQGDVGSG 290

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAH 363
           KT+VA IA+   V AG Q  +MAP  +LA+QHYE   K  +     I VE++ G+M    
Sbjct: 291 KTVVATIALINTVIAGYQGALMAPTEVLARQHYESFVKGFEKAGLDIRVELLVGSMTAKQ 350

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +++A  RIA G A II+GTHAL Q+ ++Y +L LVI DEQHRFGV QR   +QK  +PH+
Sbjct: 351 KKEAYARIADGTAGIIVGTHALIQEKVEYKELALVITDEQHRFGVNQRRDFSQKGKSPHI 410

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++  +   +    +   ++ G+
Sbjct: 411 LVMSATPIPRTLAIILYGDLDISIIDEMPANRLPIKNCVVDESYRPKAYTFIHKQVASGR 470

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y ICP +E+ +     +VV+    L +      I  +HG+M    K  VM+ F     
Sbjct: 471 QCYVICPMVEDSEAVEAENVVDYTAMLKKELPDIRIEYLHGKMRPSLKNEVMERFAAHET 530

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L++TTVIEVG++V +++++++EN+E FGLAQLHQLRGRVGRGE  S CI +     S+
Sbjct: 531 DVLVSTTVIEVGVNVPNSTVMMVENSERFGLAQLHQLRGRVGRGEYQSYCIFVTGNK-SE 589

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               RL +L  + DGF IAEEDL+ R  G+  G++QSG   F IA        L+ A   
Sbjct: 590 KIRKRLEILNKSNDGFKIAEEDLRLRGPGDFFGVRQSGDFDFGIADVFTDAKTLKEASDA 649

Query: 663 AKHILTQDPDLTSVRGQSIR 682
           AK +L +DP+L       ++
Sbjct: 650 AKDMLKKDPELKLENNVYLK 669


>gi|238927334|ref|ZP_04659094.1| DNA helicase RecG [Selenomonas flueggei ATCC 43531]
 gi|238884616|gb|EEQ48254.1| DNA helicase RecG [Selenomonas flueggei ATCC 43531]
          Length = 706

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 233/667 (34%), Positives = 362/667 (54%), Gaps = 32/667 (4%)

Query: 1   MRPSFLNP------LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID 54
           MR  FL        L   ++  RGVG + +  L+++            DLL ++P ++ D
Sbjct: 7   MRQPFLKGWRQCVKLTDSVNAVRGVGVRKAALLARL------GVRTVYDLLTFYPRAYED 60

Query: 55  RHYRPKISEISEERIVTITGYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEM 112
           +    +I +++     T+ G I Q +  Q ++R       L+ DGTG    ++F ++   
Sbjct: 61  QSRITRIMDLAAGTRATVLGMIQQVTERQTRRRGFTVLTALVGDGTGYAQAVWFNQR--F 118

Query: 113 LKNVFFEGRKITVTGKIKKLKNR-----IIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGL 166
           LK     G++I +TGK+              V    +    +D    L I  +Y+   GL
Sbjct: 119 LKGKLRTGQRILLTGKVDYAYGGGGQMAFSPVTSFVLLGAQEDAAAHLGILPIYAATEGL 178

Query: 167 SVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225
           +    +++  + L+     L E + + +  +      + AF+ IH P   KD E  + AR
Sbjct: 179 TQKQLRQMTADVLAHAGEELTETLPEQIRAEYHLIGRSAAFSQIHFP---KDTEELAAAR 235

Query: 226 ERLAYDELLAGQIALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
            RLA++EL   Q  LL ++KQ  + E GI     G +  ++   +PF+ T+ QE    +I
Sbjct: 236 RRLAFEELYLIQCGLLALKKQTAEDEEGIAHRANGALVARVRDALPFALTEDQEKVWAEI 295

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
            +DM     M R++QGDVGSGKT +AL+A+   VE+G Q  +MAP  ILA+QHY+ ++++
Sbjct: 296 SRDMEAPLPMRRLVQGDVGSGKTAIALLALVKTVESGCQGALMAPTEILARQHYDGLREF 355

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                I V  ++G + +    + L  +A  ++ ++IGTHAL Q+ + + +L LV+ DEQH
Sbjct: 356 LTPLGIRVGFLSGRLTKKEHAEVLSALASHESDVVIGTHALIQEGVAFDRLGLVVTDEQH 415

Query: 405 RFGVQQRLKL-TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           RFGV QR  L  +    P VL+MTATPIPRT+ LT  GD+D+S+I   P GR+PI+T + 
Sbjct: 416 RFGVAQRSALEKKSGIVPDVLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRQPIRTFLR 475

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE--HFTSSIAII 521
                 ++   ++  +  G++AY +CP IE  +ES+  S  E +N L           ++
Sbjct: 476 DETARAKIYAFVRREIERGRQAYVVCPLIEANEESDLPSAEEVYNELSCGSFRGIRCGLV 535

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HGR+   DKE+VM  F  G  KLL+ATTVIEVG++V +A+++++E+AE FGLAQLHQLRG
Sbjct: 536 HGRLKASDKEAVMRGFYAGEIKLLVATTVIEVGVNVPNATVLVVEHAERFGLAQLHQLRG 595

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           RVGRG + S CIL+           RL V++ T DGF +AEEDL+ R  G+  G  Q G+
Sbjct: 596 RVGRGSDASYCILIAGRQ--AAGAERLRVIEETSDGFRLAEEDLRLRGPGQFFGAMQHGL 653

Query: 642 PKFLIAQ 648
               IA 
Sbjct: 654 GDLKIAD 660


>gi|332284439|ref|YP_004416350.1| ATP-dependent DNA helicase RecG [Pusillimonas sp. T7-7]
 gi|330428392|gb|AEC19726.1| ATP-dependent DNA helicase RecG [Pusillimonas sp. T7-7]
          Length = 699

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 228/656 (34%), Positives = 357/656 (54%), Gaps = 19/656 (2%)

Query: 30  IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP 89
                +    +  D + + P  + D      I+ +       + G + + S  Q + RR 
Sbjct: 29  ERKLRHLGLHQPSDFVVHLPLRYEDETQITPIASVQPGAAAQVEGDVIR-SEVQFRPRRQ 87

Query: 90  YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ 149
              ++ D TG++ L + +      K V   G++I V G+++       MVHP      + 
Sbjct: 88  LHAIIQDDTGQLALRWLHFYPNQQKQV-EAGKRIRVRGEVRNGFGGYEMVHP--KVSTAG 144

Query: 150 DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209
                 +  +Y    GL     +K I  AL     L + +  +L Q+    S A+A  ++
Sbjct: 145 MPLPQALTPIYPTTDGLPQTSLRKAIDAALGVAD-LSDSLPVELCQRYGLISFADAIRVL 203

Query: 210 HNPRK----AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQK 264
           H+P      A   E   PA  R+ +DELLA Q++L   R   +++    ++  +G + Q+
Sbjct: 204 HHPPANVSYADLIEREHPAWVRIKFDELLAQQLSLAAARAARRRQRAPALSAAQGNLPQQ 263

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           + +++PF+ T +Q   I +I QD+ +   M R+LQGDVGSGKT+VA  A A A+ +G Q 
Sbjct: 264 LKQSLPFTLTGAQTRVIAEISQDLLRTFPMHRLLQGDVGSGKTIVAAFAAAQAIASGCQV 323

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            IMAP  ILA+QH+  ++ + +   + +  + G++    R+ A + +A  QA +++GT A
Sbjct: 324 AIMAPTEILAEQHFHKLRAWLEPLGVRLAWLAGSLTGKQRKAAFDAVASSQAQLVVGTTA 383

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ--------KATAPHVLLMTATPIPRTLV 436
           L Q+ + +  L L+I+DEQHRFGV QRL+L++        +A  PH L M+ATPIPRTL 
Sbjct: 384 LIQEKVIFDNLGLIILDEQHRFGVGQRLELSRKGEDSLGGQALMPHQLNMSATPIPRTLA 443

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +T   D+D+S I E P GR P+ T +I  NR DEV+  +   + +G++AYW+CP +EE +
Sbjct: 444 MTFFADLDVSAIDELPPGRSPVLTKLIADNRRDEVLGSVMTEVRQGRQAYWVCPLVEESE 503

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
               ++ V+    L +      + +IHG+++  +K+ VM  F+ G   LL+ATTVIEVG+
Sbjct: 504 ALQLQTAVDTHARLVQALPDMRVGLIHGKLATSEKQEVMQEFRAGRIDLLVATTVIEVGV 563

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +AS++IIE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS  +  RL  +  T 
Sbjct: 564 DVPNASLMIIEHAERFGLAQLHQLRGRVGRGSRQSICVLMYQAPLSAIARQRLRAMYETA 623

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           DGF IA  DL+ R  GE LG++QSG      A  +    + E AR+    +    P
Sbjct: 624 DGFEIARRDLELRGPGEFLGVRQSGQELLRFASIDTDIRIAEQAREAVVELRDSYP 679


>gi|329921159|ref|ZP_08277681.1| ATP-dependent DNA helicase RecG [Lactobacillus iners SPIN 1401G]
 gi|328934797|gb|EGG31288.1| ATP-dependent DNA helicase RecG [Lactobacillus iners SPIN 1401G]
          Length = 673

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 219/694 (31%), Positives = 356/694 (51%), Gaps = 33/694 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  L ++            DLLFY P  + D      ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALLQLK------IKTIYDLLFYFPRRY-DSLETFPLNELK 58

Query: 66  EERIVTITGYISQHSSFQLQK----RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I              R  +K+ ++     I + FF +    LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDHD--IIMVNFFNQ--PWLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS- 180
            I + GK       +       I    +       E VYSL + +        I +A+  
Sbjct: 115 DIAIYGKYVLASQTLSAYK---IVLKEE-----GFEPVYSLNSHIKQKKLVSFINQAIEK 166

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-A 239
            LP LPE I + L  K     +      +H P   KD +    A+    + E    Q+  
Sbjct: 167 YLPQLPEVIPQYLRDKYKLLDVQSMIIQMHQP---KDLQQVKVAQRTAIFLEFFVFQLQL 223

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   RM R+LQ
Sbjct: 224 SQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKRMNRLLQ 283

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   ++T + 
Sbjct: 284 GDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSST 343

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L  K  
Sbjct: 344 KLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGK 403

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++  +   L
Sbjct: 404 MVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQL 463

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
            +G + Y + P I E  + + ++    +  +  +F +  +A++HG+M    K  +MD+F 
Sbjct: 464 EQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSDIMDAFI 523

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S CI +  P
Sbjct: 524 HGSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGSTQSYCIFVSDP 583

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             + ++  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     + ++   
Sbjct: 584 K-TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINNYNIFTT 642

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           A+K++K ++ Q+P+L       +++   L +Y++
Sbjct: 643 AQKESKILVYQNPELVGEEYDFLKL---LMEYDD 673


>gi|297191821|ref|ZP_06909219.1| ATP-dependent DNA helicase RecG [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197722012|gb|EDY65920.1| ATP-dependent DNA helicase RecG [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 738

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 231/735 (31%), Positives = 373/735 (50%), Gaps = 54/735 (7%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L  PL   + +G   +  +++ ++          DLL ++P  + +R     +SE+  +
Sbjct: 16  ALDEPLK--KTLGAATAKVMAEHLDLHTLG-----DLLHHYPRRYAERGELTSLSELPLD 68

Query: 68  RIVTITGYIS--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
             VT+   ++  +  +F   + R  ++ + DG+G + L+FF +           G +   
Sbjct: 69  EHVTVVAQVADARIHTFNQGRGRRLEVTITDGSGRLQLVFFGKGVHKPHKDLLPGTRAMF 128

Query: 126 TGKIKKLKNRIIMVHPHYI-------FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            GK+     ++ + HP Y          ++ D     +  +Y     L      K I   
Sbjct: 129 AGKVSVFNRKLQLSHPAYEPLSGGASAADAVDAFANQLIPIYPACKQLESWKISKAIDAV 188

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L R     + +   L + +   ++ +A   IH PR   D E     RERL +DE    Q+
Sbjct: 189 LDRSAEAVDPLPPALREGRGMATLPDALRKIHRPRTKADIEAA---RERLKWDEAFVLQV 245

Query: 239 ALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           AL   R    +        V G +       +PF+ T+ Q+S  K+I  D++ ++ M R+
Sbjct: 246 ALARRRYADTQLPAVARRPVPGGLLDAFDAELPFTLTEGQQSVSKEIFDDLATEHPMHRL 305

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQ 346
           LQG+VGSGKT+VAL AM A V+AGGQA ++AP  +LAQQH+  I +              
Sbjct: 306 LQGEVGSGKTMVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGA 365

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
                V ++TG+M  A RR AL  +  G+A I+IGTHAL +D ++++ L LV+VDEQHRF
Sbjct: 366 EQGTKVVLLTGSMGAAARRHALLDLVTGEAGIVIGTHALIEDKVRFHDLGLVVVDEQHRF 425

Query: 407 GVQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           GV+QR  L  +    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI + ++P 
Sbjct: 426 GVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPA 485

Query: 466 NR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----- 516
                 +    ER++  +  G +AY +CP+I + +E   +   E                
Sbjct: 486 ADKPHFLSRAWERVREEVEGGHQAYVVCPRIGDDEEQPKKKTAEDEAEKRPPLAVLEVAD 545

Query: 517 ----------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      + ++HGRM+  DK+ VM  F  G   +L+ATTVIEVG++V +A+ ++I 
Sbjct: 546 QLAKGPLSGLRVEVLHGRMAPDDKDDVMRRFSAGDVDVLVATTVIEVGVNVPNATAMVIM 605

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           +A+ FG++QLHQLRGRVGRG     C+L+   P +  +  RL+ + +T DGF ++  DL+
Sbjct: 606 DADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEASPARQRLAAVASTLDGFELSRIDLE 665

Query: 627 QRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           QR+EG++LG  QSG+     +      + ++  AR++A  I+  DPDL   R   +R  L
Sbjct: 666 QRREGDVLGQAQSGVRSSLRMLTVIEDEEVIAAAREEAVAIVGADPDLE--RLPELRTAL 723

Query: 686 YLYQYNEAFQFIRAG 700
                 E  Q++  G
Sbjct: 724 DALLDKEREQYLDKG 738


>gi|328885306|emb|CCA58545.1| ATP-dependent DNA helicase RecG [Streptomyces venezuelae ATCC
           10712]
          Length = 730

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 223/742 (30%), Positives = 375/742 (50%), Gaps = 60/742 (8%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P+   PL   L      G   +  +++       +     DLL ++P  + +R     ++
Sbjct: 5   PALDEPLKKSL------GPATAKVMAE-----ALDLHTVGDLLHHYPRRYAERGELTTLA 53

Query: 63  EISEERIVTITGYISQHSSFQL----QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
           ++  +  VT+   ++            + +  ++ + DG+G + L+FF +      +   
Sbjct: 54  DLPLDEHVTVVARVADARVLTFNGSKGRGQRLEVTITDGSGRLQLVFFGKGVHKPHHDLL 113

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIF-----HNSQDVNFPLIEAVYSLPTGLSVDLFKK 173
            G +    GK+     R+ + HP Y         + DV    +  +Y     L      K
Sbjct: 114 PGTRAMFAGKVSLFNRRLQLAHPSYELLRGDGEEAVDVWAGALIPIYPATAKLESWKIAK 173

Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            +   L       + +   L + +    + +A  +IH PR   D    + ARERL +DE 
Sbjct: 174 AVDAVLPSAVEALDPLPDALREGRGLAQLPDALRLIHRPRTKADI---ATARERLKWDEA 230

Query: 234 LAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
              Q+AL   R    +   +        I       +PF+ T  Q    ++I  D++ ++
Sbjct: 231 FVLQVALARRRHADTQLPAVARRPAPDGILDAFDAKLPFTLTDGQRKVSQEIFDDLATEH 290

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-------- 344
            M R+LQG+VGSGKT+VAL AM A V++GGQA ++AP  +LAQQH+  + +         
Sbjct: 291 PMHRLLQGEVGSGKTMVALRAMLAVVDSGGQAAMLAPTEVLAQQHHRSVTEMMGELAEGG 350

Query: 345 ---TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
                +    V ++TG+M  A RR+AL  +  G+A ++IGTHAL +D ++++ L LV+VD
Sbjct: 351 MLGGADRATKVVLLTGSMGTAARRQALLDLVTGEAGVVIGTHALIEDKVKFHDLGLVVVD 410

Query: 402 EQHRFGVQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           EQHRFGV+QR  L  +    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI +
Sbjct: 411 EQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIAS 470

Query: 461 VIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV------------ 504
            ++P       +    ER++  + +G +AY +CP+I ++++   ++              
Sbjct: 471 HVVPAADKPHFLARAWERVREEVGKGHQAYVVCPRIGDEEDQKKKAKASAEDEAEKRPPL 530

Query: 505 ---ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              +    L     +   IA++HGRM   DK+ VM  F  G   +L+ATTVIEVG++V +
Sbjct: 531 AVLDVAEKLRTGPLAGLRIAVLHGRMHPDDKDDVMRRFAAGELDVLVATTVIEVGVNVPN 590

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A+ ++I +A+ FG++QLHQLRGRVGRG     C+L+   P +  +  RL+ +  T DGF 
Sbjct: 591 ATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEMPEATPARQRLAAVAATLDGFE 650

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRG 678
           ++  DL+QR+EG++LG  QSG+   L     + D  ++  AR++A  ++  DPDLT    
Sbjct: 651 LSRIDLEQRREGDVLGQAQSGVRSSLRVLAVIDDEEVIAAAREEATALVLADPDLTG--H 708

Query: 679 QSIRILLYLYQYNEAFQFIRAG 700
           Q++R  L      +  +++  G
Sbjct: 709 QALRTALDALLDKDREEYLEKG 730


>gi|330815591|ref|YP_004359296.1| ATP-dependent DNA helicase RecG [Burkholderia gladioli BSR3]
 gi|327367984|gb|AEA59340.1| ATP-dependent DNA helicase RecG [Burkholderia gladioli BSR3]
          Length = 795

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 240/656 (36%), Positives = 365/656 (55%), Gaps = 29/656 (4%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+    +    G +   + 
Sbjct: 115 KTADKLAKL------GLTRSIDLVLHLPMRYEDETTLTPMRELLPGELAQTEGVVYD-NE 167

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 168 ITYRPRRQLLVRLRDEDGSELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 226

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +       ++  VY    G+S    +K I  AL+R P LPE +  ++    L+ 
Sbjct: 227 PAVRVVDEDTPLAQVLTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPAEVEAAYLRP 285

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P++A+A   +H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 286 LGVPALADAVRQLHHPGVDSDETALIDGTHPAWIRIKFDELLAQQLSLKRAHEERRTRAA 345

Query: 253 IPINVEGKIAQ-----KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +       Q     ++   +PFS T +Q   + +I +D++  + M R+LQGDVGSGKT
Sbjct: 346 PAMPRRAADDQDSLVARLFAALPFSLTGAQTRVVDEIARDLTLAHPMQRLLQGDVGSGKT 405

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 406 VVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVTVAWLAGSLKTRDKRSA 465

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-----TAPH 422
           +E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV QRL L  KA       PH
Sbjct: 466 IEAAALGTAQLVIGTHAIIQDTVEFARLGLVIVDEQHRFGVAQRLALRAKAGGPAGFQPH 525

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+M+ATPIPRTL +T   D+++S I E P GR PI T ++   R +EVI R++     G
Sbjct: 526 QLMMSATPIPRTLAMTYYADLEVSTIDELPPGRTPIVTKLVADARREEVIGRVRDAALGG 585

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++ YW+CP IEE +    ++ VE + +L       ++ ++HGR+S  +K SVM++F    
Sbjct: 586 RQVYWVCPLIEESETLQLQTAVETYETLAAALPGVNVGLVHGRLSPAEKASVMEAFSRNE 645

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S+C+L+Y  PLS
Sbjct: 646 VQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASACVLMYSGPLS 705

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
                RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E
Sbjct: 706 IAGRARLKTMRETNDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLEQDGWLIE 761


>gi|229829117|ref|ZP_04455186.1| hypothetical protein GCWU000342_01202 [Shuttleworthia satelles DSM
           14600]
 gi|229792280|gb|EEP28394.1| hypothetical protein GCWU000342_01202 [Shuttleworthia satelles DSM
           14600]
          Length = 683

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 228/684 (33%), Positives = 350/684 (51%), Gaps = 17/684 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +G+G+K      K+      +     DLL ++P S+          ++     V +
Sbjct: 7   LRDLKGIGEKTEKLYQKL------DIYTVGDLLLHYPRSYQVYPPLSNYGDLKPGASVAL 60

Query: 73  TGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
              +   +  +  +R          G   + L++F  +   +++    G      GK++ 
Sbjct: 61  LARLKSPAKVRKGRRMDVTLATAFFGDRSLDLVWF--RMPYIRSQLAVGEAYVFYGKLEA 118

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
              R+ +        +         + VYSL  GL+ +  KK +         L E++ +
Sbjct: 119 EGERLKISQAQIYSPDEYSALMQQPQPVYSLTGGLTNNNVKKAVQTVFDSGIRLGEYLPQ 178

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           ++L+     S   A   IH P    DF+    AR+RL YDE     + L   R     E 
Sbjct: 179 EILEGNQLASYEWALKQIHFP---IDFDHLLRARKRLVYDEFFFFLLELGRNRLDEAPEE 235

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                 E    + +   +PF  T  Q+ A+ DIL D+S      R++QGDVGSGKT+VA 
Sbjct: 236 NRHPITETAQMEDVKERLPFDLTPGQKKALADILGDLSAPLVSQRLIQGDVGSGKTIVAF 295

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALE 369
           +AM A +E G QAVIMAP  +LA+QH +   +  Q       V  +TG      +R+   
Sbjct: 296 LAMLACLENGFQAVIMAPTEVLARQHEKEFIRLCQEYALPYSVVCLTGASTAKEKREIQS 355

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           RI+   A  I+GTHAL Q+++++  L LV+ DEQHRFGV+QR  L  K  +P+VL+M+AT
Sbjct: 356 RISEEDALFIVGTHALIQETVEFRDLALVVTDEQHRFGVRQRKILASKGQSPNVLVMSAT 415

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL +   GD+++S I E P+GR+ IK  II  ++     + +   +  G++AY IC
Sbjct: 416 PIPRTLAMILYGDMNLSVIRELPSGRRKIKNAIIRSDKKKSAWQFVAREVLAGRQAYVIC 475

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           P IE    S   +V++   +L + +     + ++HGRM   DK+ VM+ F +G  ++L++
Sbjct: 476 PLIEASDVSEDENVMDYAQALKDFYGDQITVGLLHGRMKSKDKDKVMEDFASGKIQVLVS 535

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTV+EVG++V +AS+++IENA  FGLAQLHQLRGRVGRG + + CI +     S+    R
Sbjct: 536 TTVVEVGVNVPNASVMLIENANRFGLAQLHQLRGRVGRGADQAYCIFI-DSSDSEEISRR 594

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L +L ++ DGF IA EDLK R  G+  GI+QSG   F IA       +L++A +D+K IL
Sbjct: 595 LEILVHSNDGFAIASEDLKLRGPGDFFGIRQSGDLDFKIADIYQDADVLQMASEDSKEIL 654

Query: 668 TQDPDLTSVRGQSIRILLYLYQYN 691
             DP L       IR  L   +  
Sbjct: 655 EADPRLVFEEHAGIRSFLERRRQE 678


>gi|94676686|ref|YP_588583.1| ATP-dependent DNA helicase RecG [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219836|gb|ABF13995.1| ATP-dependent DNA helicase RecG [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 699

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 239/680 (35%), Positives = 368/680 (54%), Gaps = 25/680 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+   GVG      L+K+            D+L + P+ + DR     I      + +T
Sbjct: 11  PLTALYGVGTNLINKLTKL------GLENLQDVLLHLPTRYEDRTKIFLIRNAPIGKFIT 64

Query: 72  ITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           I G +     S  + ++      L D +G +T+LFF     M K     G+ +T  GKI 
Sbjct: 65  IQGIVLDSQISINIHRKSILNCRLQDDSGVLTILFFNGNLAM-KKGLCPGKLVTAYGKIY 123

Query: 131 KLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LP 186
             K    M+HP Y  H+++  N     +  +Y    G+     + I  +AL  L    + 
Sbjct: 124 LEKKGARMIHPEYCIHSNRQGNKLLSSLTPIYPTTKGVDQTTLRAITDQALKFLDQTTVS 183

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLL 242
           E +   L       S++EA + +H P              PA+ RL  +EL+A  ++LL 
Sbjct: 184 ELLPPQL--SSGLMSLSEALHNLHRPPTNISISDLKLGLYPAQRRLILEELIAYYLSLLS 241

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            R   KK + +P+N +  + Q  + ++PFS T +Q+ A+ +I QD+++   M+R+LQGDV
Sbjct: 242 ARTVEKKLLALPLNNKTDLIQCFISSLPFSLTIAQQRAVMEIDQDLARNIPMMRLLQGDV 301

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVA +A   A+    Q V+M P  +LA+QH +    +     I V  +TG     
Sbjct: 302 GSGKTLVAALAALRAISNSSQVVLMTPTELLAEQHTKNFCNWFTPLGITVSWLTGKQKGK 361

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT----QKA 418
            R   LE IA G   +++GT ALFQ  +Q+ +L LVI+DEQHRFGV QRL L     Q  
Sbjct: 362 IREAQLESIASGHVAMVVGTQALFQKKVQFSRLSLVIIDEQHRFGVHQRLTLWEKGSQHG 421

Query: 419 TAPHVLLMTATPIPRTLVLTSLG-DIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LK 476
             PH L++TATPIPRTL +T+   + D S I E P+GR P+ T+ I  NR  E+I+R  K
Sbjct: 422 FQPHQLILTATPIPRTLAMTTSCINFDTSVIDELPSGRVPVTTIAITNNRRHEIIQRLEK 481

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
           + L + ++ YW+C +IE+  +   +SV   +  +  +     I +IHGRM   +K+ +M 
Sbjct: 482 LCLQDKRQVYWVCTRIEKSTQRELQSVKATWEEIRSYLPELQIGLIHGRMKAQEKQQLMQ 541

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +F+ G  +LL+ATTVIEVG+D+ +AS+IIIENAE  GLAQLHQLRGRVGR    S C+L+
Sbjct: 542 AFQAGKIRLLVATTVIEVGVDIPNASLIIIENAERLGLAQLHQLRGRVGRAIVASHCVLI 601

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y+ PL+K +  R+ +++++ +GF+IA+ DL  R  G++ G +Q+G  +F I       +L
Sbjct: 602 YNSPLNKAAQQRIKIIRDSNNGFVIAQHDLDIRGPGKLFGTRQTGQTEFRILDLSRDQAL 661

Query: 656 LEIARKDAKHILTQDPDLTS 675
           +   ++    I    P++  
Sbjct: 662 ILEVQEFINDIHQHFPEIAQ 681


>gi|148544386|ref|YP_001271756.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri DSM 20016]
 gi|148531420|gb|ABQ83419.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri DSM 20016]
          Length = 678

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 228/695 (32%), Positives = 365/695 (52%), Gaps = 22/695 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   ++  +GVG K    L+ +            DLL Y+P+ + D      I    
Sbjct: 1   MRSLTDSVANLKGVGPKRVADLATL------GIDTIEDLLTYYPTRYNDFT-PTDIESAK 53

Query: 66  EERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           +++ +T+ G +           +R      +  G   +   FF +    +K      +++
Sbjct: 54  DKQKITLQGVVVSEPLLVRYGYRRNRLTFRMQVGNEVVIATFFNQ--PYIKKQIELNQQV 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           TV GK    + ++            +  +     AVY++   +  ++ +  I +A     
Sbjct: 112 TVMGKWDAPRRQVTGN----KLLKEKADDRNEFGAVYAVNKHIRQNVLQSFIRQAYEEYA 167

Query: 184 -VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            ++P ++ + + Q+       +    IH P+     +         AY+E    Q+ L  
Sbjct: 168 NIIPTYLPETIRQRYRLMDRRQMIREIHFPQTQATAKAARRT---AAYEEFFLFQLRLQA 224

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+  ++E G  I       ++ +  +PF  T +Q+  + +I +DM Q  +M R+LQGDV
Sbjct: 225 IRRAHRQEDGERILYHNDELKEFIGGLPFELTDAQKRVVNEICRDMRQPYQMNRLLQGDV 284

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA IA+ AA+ AG QA +MAP  ILA QH + + K  + T + V ++TG++   
Sbjct: 285 GSGKTIVAAIAIYAAITAGYQAALMAPTEILAGQHAKKLAKIFEGTHVQVALLTGSLTAK 344

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
             R+ L  +  G  ++I+GTHAL QD ++Y  L LVI DEQHRFGV QR +L +K   P 
Sbjct: 345 QHRELLTAMKRGDVNLIVGTHALIQDGVEYANLGLVITDEQHRFGVNQRQQLREKGEHPD 404

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL +T+ G++D+S I + PAGRKPI+T  +  N+    I  L+  L +G
Sbjct: 405 VLAMTATPIPRTLAITNYGEMDVSIIDQLPAGRKPIQTKWLQSNQHAAAIHFLREQLKQG 464

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNG 540
            +AY + P IEE    + ++  + +N L         + ++HGRM   +K+  M  FK+G
Sbjct: 465 AQAYVVSPLIEESAALDVQNATDLYNQLSADLEPAYKVGLLHGRMGTEEKDEAMRQFKSG 524

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+ATTVIEVG+D  +A++++I +A+ FGLAQLHQLRGRVGRG   S C+L+  P  
Sbjct: 525 ELQVLVATTVIEVGVDNPNATVMVIYDADRFGLAQLHQLRGRVGRGSRQSYCLLIADPK- 583

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +     R+  +  T+DGF IAE+DLK R  G++LG KQSGMP+F +  P     +L+IAR
Sbjct: 584 TDEGKARMKTMVATDDGFKIAEQDLKLRGSGDVLGKKQSGMPEFKVGDPVADLKMLQIAR 643

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
            DA ++L           Q + + L  ++    F 
Sbjct: 644 ADAGNLLGMSKWDQVDENQPLVLYLKRHELETHFD 678


>gi|220917310|ref|YP_002492614.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955164|gb|ACL65548.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 904

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/678 (34%), Positives = 354/678 (52%), Gaps = 12/678 (1%)

Query: 33  CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-K 91
                       L   P ++ DR    +ISE+       + G +S     +++  +P  K
Sbjct: 229 LEERGRETVEAALELWPRAYQDRTALRRISELRVGDEAAVLGTVSHVRVQRMRSGKPLLK 288

Query: 92  ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN-RIIMVHPHYIFHNSQD 150
           + + +G   + L+FF      LK  F  G  +  +GK+ +    R  M  P      + D
Sbjct: 289 VGVQEGGSALELVFFNPPPWRLKQ-FAAGESLLCSGKVTEGFGARRQMSQPEVEKVQAGD 347

Query: 151 -VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNI 208
             NF  I  VY  P        +K++   +  L P   + +  ++  ++     AEA   
Sbjct: 348 SANFGRIVPVYPGPADYQHPALRKLMKRLVDELVPAAVDDVPAEIRARRGLVGRAEALRE 407

Query: 209 IHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
            H P    D     E  +PA  RL ++EL   Q+AL + R+  + E GI  +       +
Sbjct: 408 AHFPPAGTDPLHAAERVTPAFRRLVFEELFFLQLALAMRRRGVRAEAGIAFDASPAALAR 467

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
            +  +PF  T +QE A+ +I +DM+    M R+LQGDVGSGKT VA  AM  AV++G QA
Sbjct: 468 AVEPLPFRLTGAQERALAEIARDMADAEPMNRLLQGDVGSGKTAVAFAAMMLAVQSGWQA 527

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +M P  ILA+QH   + ++ +   + V ++  +     +R+A   +A G+A I +GTHA
Sbjct: 528 ALMVPTEILAEQHARTLSRWLEGRGVEVALVGASARGKGQREARAAVAEGRARIAVGTHA 587

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L + ++ + +L LV+VDEQHRFGV QR  L  K   P VL+MTATPIPRTL L   GD+D
Sbjct: 588 LLEQAVGFERLGLVVVDEQHRFGVMQRASLISKGRRPDVLVMTATPIPRTLALAFYGDLD 647

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            SKI+E P GR P+ T +   ++        +  L  G++ Y + P +EE ++++     
Sbjct: 648 QSKISELPPGRTPVTTRLFGDSQRKAAYALARGELEAGRQVYVVYPLVEESEKTDLADAT 707

Query: 505 ERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
                L + F    I ++HGRM   +K+ VMD F+ G   +L+ATTVIEVG+DV +AS++
Sbjct: 708 TGAADLGKVFPGHEIGLLHGRMKPEEKQRVMDRFRAGEVHVLVATTVIEVGVDVPNASVM 767

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH-PPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+E+AE FGL+QLHQLRGRVGRG   S C+LL H      ++  RL  ++ T+DGF IA 
Sbjct: 768 IVEHAERFGLSQLHQLRGRVGRGAAKSHCLLLAHFRRAGDDARERLRAMEETQDGFEIAR 827

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
            DL+ R  GE+LG +QSG     +A     +++LE AR++A  ++ +D DL      + R
Sbjct: 828 VDLRIRGPGELLGTRQSGQKLLDVADLYRDEAILEEAREEAFGLVERDGDLARPEHAAAR 887

Query: 683 ILLYLYQYNEAFQFIRAG 700
             L   ++       + G
Sbjct: 888 EALAG-RWAGRLSLAQVG 904


>gi|67458770|ref|YP_246394.1| ATP-dependent DNA helicase RecG [Rickettsia felis URRWXCal2]
 gi|67004303|gb|AAY61229.1| ATP-dependent DNA helicase RecG [Rickettsia felis URRWXCal2]
          Length = 707

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 264/681 (38%), Positives = 382/681 (56%), Gaps = 35/681 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LFAP+ TF  + +     L ++            DLLFY P S+ ++   P ++ + +  
Sbjct: 11  LFAPVKTFINIREDTVSALKRL------GIDNIRDLLFYLPVSYQNKILSPNLTGVRDGE 64

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+     I    +   +  +P KI  ++ TG + L+FF+R    + N    G    ++GK
Sbjct: 65  IIQTEVVIESV-NLPKKGNQPLKITASNDTGSLLLVFFHRPPPFIFNKLKVGTSHIISGK 123

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV---- 184
           ++   + + + HP ++ +         IE +YSL   LS       I++A+         
Sbjct: 124 VQFFDHYLQISHPEFVTNPKLAKE---IEPIYSLTYLLSNKQLYSYIIKAMDIFEEKCKG 180

Query: 185 -----LPEWIEKDLLQKKSFPSIAEAFNIIH-----NPRKAKDFEWTS----PARERLAY 230
                + +++++ L   K   S+  +  + H     NP K     W       A+++LA 
Sbjct: 181 LEDKEVKDYLDEVLQSLKMLHSLCHSRPLCHSRVGGNPEKMDPAVWPRDDTVAAKKQLAA 240

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            EL+A QI+LL +R Q   + G        I   IL  + F  T  Q+  I++I  + S 
Sbjct: 241 KELIANQISLLNVRTQIAGKQGNIYPKAAGIQANILNELGFELTSYQKQVIEEIELEQSD 300

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           K  M+R+LQGDVGSGKTLVAL+ M   VEAG QA +MAP  +LA QHYEF  K  +NT I
Sbjct: 301 KVEMMRLLQGDVGSGKTLVALLTMVNTVEAGFQATLMAPTDLLANQHYEFFVKALKNTNI 360

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V ++TG +  A R+  + ++ +G+  I++GTHALFQ+ + + KL  +++DEQHRFGVQQ
Sbjct: 361 RVGLLTGKILGAARKNIMIQLENGEIDILVGTHALFQEKVSFKKLGYIVIDEQHRFGVQQ 420

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           RL L  K   P VL+MTATPIPR+L LT  GD+ ISK+  KP  R PI T  + +N+I+ 
Sbjct: 421 RLNLINKGVNPDVLVMTATPIPRSLALTMFGDMTISKLMGKPKNRLPIATNTMSVNKIEH 480

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSV------VERFNSLHEHFTSSIAIIHGR 524
           +IE +   L  G++ YWICP IE+ ++            + RF+S+   +   + IIHG+
Sbjct: 481 IIEAINKKLVAGERVYWICPLIEQGEKEGPEEDGLLMDVMNRFDSIENIYRGYVGIIHGK 540

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M +  K+ +M  FK G  K+L+ATTVIEVGIDV +A++I+IENAE FGLAQLHQLRGRVG
Sbjct: 541 MKNEQKDQIMKQFKEGEIKILVATTVIEVGIDVPEATLIVIENAEQFGLAQLHQLRGRVG 600

Query: 585 RGEEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           RG   S CILLY+P  L K +  R  ++K T DGF IAE+DLK R  GEILG+KQSG  +
Sbjct: 601 RGSLQSYCILLYNPKRLGKVARGRFEIMKQTNDGFYIAEQDLKLRGSGEILGVKQSGEME 660

Query: 644 FLIAQPELHDSLLEIARKDAK 664
           F  A       LL  A K A+
Sbjct: 661 FFFADLAKDYDLLLKAHKFAE 681


>gi|239928711|ref|ZP_04685664.1| ATP-dependent DNA helicase RecG [Streptomyces ghanaensis ATCC
           14672]
 gi|291437035|ref|ZP_06576425.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291339930|gb|EFE66886.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 740

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 220/740 (29%), Positives = 364/740 (49%), Gaps = 65/740 (8%)

Query: 16  FRGV-GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74
            + V G   +  +++ +           DLL ++P  + +R     ++++  +  VT+  
Sbjct: 11  LKKVLGPATAKVMAEHL-----GLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVA 65

Query: 75  YISQHS-------SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            ++               K +  ++ + DG+G + L+FF             G +    G
Sbjct: 66  QVADARLHTFASAKAPRGKGQRLEVTITDGSGRLQLVFFGAGVHKPHKELLPGTRALFAG 125

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNF--------PLIEAVYSLPTGLSVDLFKKIIVEAL 179
           K+     R+ + HP Y                    +  +Y     L      K +   L
Sbjct: 126 KVSVFNRRLQLAHPAYELLRGDGDGAEETVESWAGALIPIYPATAKLESWKIGKALQTVL 185

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
                  + + + L + +    + EA   IH P+   D E    AR RL +DE    Q+A
Sbjct: 186 PSAREAVDPLPESLREGRGLVPLPEALLKIHRPQTKADIE---DARARLKWDEAFVLQVA 242

Query: 240 LLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L   R    +   +        +       +PF+ T+ Q+    +I  D++ ++ M R+L
Sbjct: 243 LARRRHADAQLPAVARRPGPDGLLAAFDDRLPFTLTEGQQKVSAEIFADLATEHPMHRLL 302

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQN 347
           QG+VGSGKT+VAL AM A V+AGGQA ++AP  +LAQQH+  + +               
Sbjct: 303 QGEVGSGKTMVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSVTEMMGELAEGGMLGGAE 362

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
               V ++TG+M  A RR AL  +A G+A I+IGTHAL +D +Q++ L LV+VDEQHRFG
Sbjct: 363 NATKVVLLTGSMGAAARRHALLDLATGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFG 422

Query: 408 VQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           V+QR  L  +    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI + ++P  
Sbjct: 423 VEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAA 482

Query: 467 RID----EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV------------------ 504
                     ER++  +  G +AY +CP+I ++++   ++                    
Sbjct: 483 DKPHFLTRAWERVREEVVGGHQAYVVCPRIGDEEDDPKKAGRKKPASPEDEAEKRPPLAV 542

Query: 505 -ERFNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            +  + L +       + ++HGRM   DK++VM  F  G   +L+ATTVIEVG++V +A+
Sbjct: 543 LDVADQLAKGPLHGLRVEVLHGRMPPDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNAT 602

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            ++I +A+ FG++QLHQLRGRVGRG     C+L+   P +  +  RL+ + +T DGF ++
Sbjct: 603 AMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEASAARQRLNAVASTLDGFELS 662

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQS 680
             DL+QR+EG++LG  QSG    L     + D  ++  AR++A  ++  DP+L   R  +
Sbjct: 663 RIDLEQRREGDVLGQAQSGTRSSLRVLAVIDDEEIIAEARREATAVVAADPELE--RLPA 720

Query: 681 IRILLYLYQYNEAFQFIRAG 700
           +R  L      E  Q++  G
Sbjct: 721 LRTALDALLDEEREQYLEKG 740


>gi|300863472|ref|ZP_07108427.1| ATP-dependent DNA helicase recG [Oscillatoria sp. PCC 6506]
 gi|300338535|emb|CBN53569.1| ATP-dependent DNA helicase recG [Oscillatoria sp. PCC 6506]
          Length = 694

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 239/705 (33%), Positives = 375/705 (53%), Gaps = 31/705 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+     + +     L K+        T  +DLL Y P  +I      KI+ +    
Sbjct: 3   LHLPIHALPALSRNNCRLLEKL------GITSILDLLLYFPRDYIKYRR-VKIAGLQIGD 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFFYRKTEMLKNV--------F 117
            VTI G I +H      K     I   ++ D TG I    F+  T              +
Sbjct: 56  SVTIVGKIKKHEIISPPKNPRLTIQTLIVKDKTGNIACKRFFNHTYYQSQQWRNEQNLMY 115

Query: 118 FEGRKITVTGKIKK-LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKI 174
             G  +TV+G +K      +I+  P     +   V      I  +Y L  G+S ++ ++ 
Sbjct: 116 VNGSIVTVSGVVKADRYYGMILTSPEIQLIDLDQVRDTKNSIIPIYPLTKGVSNEIVQEA 175

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           +  AL    +L + + + L +K     +  A   IH P      E     R RL +DE  
Sbjct: 176 VSSALEMTELLIDPLPQHLRRKCGLMELQVAIANIHQPPDEPQLEAA---RRRLVFDEFF 232

Query: 235 AGQIALLLMRKQF-KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q++ L+ R+Q   +     I     + ++    +PFS T +Q   I DIL DM+ K  
Sbjct: 233 YLQLSFLVRRRQLLARSAITKITPTSPLVEQFYSQLPFSLTLAQRQVINDILNDMTAKTP 292

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++QGDVGSGKT+VA++A+  A+++G QA +MAP  +LA+QHY  I  + +   + V+
Sbjct: 293 MNRLVQGDVGSGKTVVAVVAILVAIQSGYQAALMAPTEVLAEQHYRKIATWFEPLGVSVQ 352

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+   A RR+   ++  G+  +++GTHAL Q+ + + +L LV++DEQHRFGVQQR  
Sbjct: 353 LLTGSTKTAKRREIHAQLETGELSLLVGTHALLQEKVNFNQLGLVVIDEQHRFGVQQRQN 412

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K   PHVL MTATPIPRTL LT  GD+D+S+I E P GR+ I T +I  N+     +
Sbjct: 413 LLNKGNRPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQKIHTKVI--NKGAPAYD 470

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKE 531
            +   + +G++AY I P +EE ++ + R+ V  +  L         + ++HGRM+  +K+
Sbjct: 471 FIHHQVLQGRQAYIILPLVEESEKLDLRAAVAEYERLSTEIFPEFRVGLLHGRMTSAEKD 530

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             + SF++   ++L++TTV+EVG+DV +A++I+I++A+ FGLAQLHQLRGRVGRG   S 
Sbjct: 531 EALKSFRDNKTQILVSTTVVEVGVDVPNATVILIDHADRFGLAQLHQLRGRVGRGSHRSY 590

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C+LL     +  +  RL VL+ + DGF I+E DL+ R  G ++G +QSG+ +F +A    
Sbjct: 591 CLLL-DTSKTAEAKARLEVLEKSTDGFFISEMDLRLRGPGVVMGYRQSGISEFALANILD 649

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRI-LLYLYQYNEAFQ 695
            + LL +AR  A  I+  DP+L +       +  L L  +N A  
Sbjct: 650 DEDLLNLARCMAVVIVKSDPNLEAYPLMVAELKRLGLTSWNCALN 694


>gi|118587509|ref|ZP_01544933.1| ATP-dependent DNA helicase RecG [Oenococcus oeni ATCC BAA-1163]
 gi|118431960|gb|EAV38702.1| ATP-dependent DNA helicase RecG [Oenococcus oeni ATCC BAA-1163]
          Length = 676

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 227/692 (32%), Positives = 373/692 (53%), Gaps = 28/692 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF  ++   GVG+K +  L ++            DLL Y+P  + D   R   S+  + +
Sbjct: 3   LFDSITELSGVGQKRAEILKQL------GILNIEDLLTYYPFRYDDLESRLP-SQTDDGQ 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            VT  G +S   +      +  +I      G   I++ FF +    LK     G+++ + 
Sbjct: 56  KVTFKGMVSSQPTISRFGYKKSRIAFRLLIGHDNISVSFFNQ--PWLKEQIEIGKEMAIF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVL 185
           G    +      +    I H   D     + A+Y     +     +++I  A ++    +
Sbjct: 114 GTYDAVH---EALKGQRIIHAEND----SLAAIYPSNQAIHQKTIQQLIENAYAKYADQI 166

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            + I + L+      S  +  + +H P  A++      AR   A++E    Q+ L LMR 
Sbjct: 167 NDIIPRRLMLAYRLLSRKKQIHDMHFPDSAEN---AKLARRSAAFEEFFIFQMRLQLMRI 223

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
              K  G  I    +I    +  +P+S T +Q+  I++IL D+ +   M R+LQGDVGSG
Sbjct: 224 SAGKNRGREIEYNSEILNDFIAKLPYSLTDAQKKVIQEILLDLKRPIHMNRLLQGDVGSG 283

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK--YTQNTQIIVEIITGNMPQAH 363
           KT+VA IAM A   AG QA IM P  ILAQQH   +     +    + +E++T  +  A 
Sbjct: 284 KTVVAAIAMLACYSAGLQAAIMVPTEILAQQHAINLSNLYQSAGLNLRIELLTSGLKAAA 343

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  +  G+  I++GTHAL Q  + ++ L L ++DEQHRFGV+QR +L ++   P +
Sbjct: 344 RRQILADLESGEIDIVVGTHALIQADVHFHNLGLAVIDEQHRFGVKQRARLREQGQNPDI 403

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I + P GR+PI T  +  N+ D V + +K  L+ G 
Sbjct: 404 LAMTATPIPRTLAITAYGEMDVSTIDQLPNGRRPIITKWVKSNQFDNVFDWVKTQLAAGA 463

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P IEE +  + ++ V  ++ L E      I ++HGR+++ +K+ V++ F     
Sbjct: 464 QVYVVTPLIEESETLDVQNAVLIYDRLKEELKPYRIGLLHGRLTNDEKQQVINDFSTNRV 523

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+ TTVIEVG+D+ +A+I++I +A+ FG+AQLHQLRGRVGRG++ S  IL+  P  ++
Sbjct: 524 QVLVTTTVIEVGVDIKNATIMVILDADRFGIAQLHQLRGRVGRGKKQSYAILVSDPK-TQ 582

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+  + +T DGF +AE+DLK R  G+++GIKQ+GMP+F +  P     ++E A++ 
Sbjct: 583 YGIDRMEAIVSTNDGFALAEKDLKLRGPGDVIGIKQAGMPEFNVGDPIHDLKMMETAQQS 642

Query: 663 AKHILTQDP-DLTSVRGQSIRIL-LYLYQYNE 692
           A  I +Q   D      + ++ L L +Y+Y +
Sbjct: 643 AIEITSQSNWDADKENAELVKYLSLTMYRYKD 674


>gi|172057921|ref|YP_001814381.1| ATP-dependent DNA helicase RecG [Exiguobacterium sibiricum 255-15]
 gi|171990442|gb|ACB61364.1| ATP-dependent DNA helicase RecG [Exiguobacterium sibiricum 255-15]
          Length = 676

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/675 (34%), Positives = 356/675 (52%), Gaps = 25/675 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVG+  +  L ++            D+L + P  + D      ++E   E  V  
Sbjct: 7   VTALKGVGRDLARKLEEMDML------TIADVLEHVPFRYDDF-VTGSLTEAIHEDKVKF 59

Query: 73  TGYISQHSSFQLQK----RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           TG +   +  +       R  +++L+ D    +T+  F R     K+    G ++TV+GK
Sbjct: 60  TGQVQSEALVRYYGKGKNRLTFRLLVED-RYSVTVTMFNR--AFYKDQLKLGEEVTVSGK 116

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
               +  I      +     +      +  VYSL   + +  F++++  A +    L E 
Sbjct: 117 WDLHRMTISATELQFGAIEGE------LTPVYSLKGDMRMKTFRRVVELAFAECEALEER 170

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           I +++ +             +H P   +D    + AR    Y+E L  Q+ L  +R   +
Sbjct: 171 IPENIRKTYRLLDRMTMLRRLHFPTTRQDL---TTARRSYVYEECLYFQLKLQTLRLGKR 227

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K  G+ + +  +   + +  +PF  T +Q+    +IL DM +  RM R+LQGDVGSGKT+
Sbjct: 228 KGQGLALPLFQQEIDQFIATLPFPLTGAQKRVTDEILADMHRPERMNRLLQGDVGSGKTV 287

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA IA+ AAV A  Q  +M P  ILA+QH   +    +   I V ++T ++    R   L
Sbjct: 288 VAAIALFAAVRANKQGALMVPTEILAEQHASSLAPLLEPLGIKVGLLTSSVKGKSRLLLL 347

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +  G+  +++GTHAL QD++ +  L LVI DEQHRFGV+QR +L  KA    VL MTA
Sbjct: 348 EALRQGKIDVLVGTHALIQDTVVFKDLHLVITDEQHRFGVEQRKRLRAKAEQADVLYMTA 407

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL ++  GD+D+S I E PAGRK I+T      +ID V   ++  L  G +AY I
Sbjct: 408 TPIPRTLAISVFGDMDVSIIDEMPAGRKEIETYWAKPEQIDRVFGFVEKELLLGHQAYVI 467

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            P IEE +  + ++ +E    L E F T  + ++HGR+S  +K+ VM +FK    ++L++
Sbjct: 468 TPLIEESESLDVQNAIELHVLLTERFSTHQVGLMHGRLSSSEKDDVMQAFKENQVQVLVS 527

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTV+EVG++V +ASII+I +AE FGLAQLHQLRGRVGRG   S CIL+  P  S     R
Sbjct: 528 TTVVEVGVNVPNASIIVIYDAERFGLAQLHQLRGRVGRGATQSFCILIADPS-SDTGKER 586

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +  +  T DGF +AE+DL+ R  G   G +QSG+P+F++  P L   ++E AR DA  +L
Sbjct: 587 IKTMTETNDGFKLAEKDLELRGAGNFFGTEQSGLPRFILTDPALDIQVMETARNDAVRLL 646

Query: 668 TQDPDLTSVRGQSIR 682
             D          +R
Sbjct: 647 RSDAFWQHPEYAVLR 661


>gi|197301673|ref|ZP_03166743.1| hypothetical protein RUMLAC_00399 [Ruminococcus lactaris ATCC
           29176]
 gi|197299113|gb|EDY33643.1| hypothetical protein RUMLAC_00399 [Ruminococcus lactaris ATCC
           29176]
          Length = 686

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 227/681 (33%), Positives = 370/681 (54%), Gaps = 18/681 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           A +ST +G+G+K      K+            DLL Y+P ++        +SE+ E  I 
Sbjct: 5   AGISTLKGIGEKTEKLFLKL------GVATVDDLLHYYPRTYEIFGPPVPVSEVQEGHIC 58

Query: 71  TITGYI-SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           T++G +  +      +  +   + L D TG + +++F  +   L+N       + + G++
Sbjct: 59  TVSGAVFGRIQVSGTKNMQVTTLYLKDLTGTLKVIWF--RMPFLRNTLGRSGPVILRGRV 116

Query: 130 KKLKNRIIMVHPH-YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
            + ++ ++M HP  Y      +     ++ VY L  GL+ +   K + +AL    +  ++
Sbjct: 117 VRKRDGLVMEHPQIYDPAARYNEKLHSMQPVYGLTAGLTNNAIIKAVRQALESNSIPEDF 176

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           + ++L    +FP    A   +H P      E    AR R  ++E L   ++L  +++  +
Sbjct: 177 LPEELETAYNFPPYEAALYEMHFPHSK---ETFIEARRRFVFEEFLTFVLSLRYVKESGE 233

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +        +       L+++P+  T +Q     +I ++M+    M R++QGDVGSGKT+
Sbjct: 234 RMKNHFTMKQQPAIDTFLQSLPYELTAAQMRVWNEIQKEMTGDYVMSRLVQGDVGSGKTI 293

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRK 366
           VA + +  +   G Q  +MAP  +LA+QHYE I    ++  +    E++TG+M    +R+
Sbjct: 294 VAFLGLLLSGLNGYQGALMAPTEVLARQHYEKISGMLEHYGLPLKAELLTGSMTAKQKRE 353

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
           A  RI  G + IIIGTHAL Q+ + Y  L LVI DEQHRFGV+QR +L  K   PH+L+M
Sbjct: 354 AYVRIESGSSSIIIGTHALIQEKVNYRNLALVITDEQHRFGVRQREQLAGKGLTPHILVM 413

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL +   GD+DIS I E P  R PIK  ++      +    ++     G++ Y
Sbjct: 414 SATPIPRTLGIILYGDLDISVINELPMNRLPIKNCVVDTGYRPKAYAFIRQQTELGRQCY 473

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP +EE +  +  +V +    L E    S  +  +HG+M + +K+ +M +F     ++
Sbjct: 474 VICPMVEESENLDAENVTDYSQMLQEILGPSIRVGYLHGKMKEKEKDEIMTAFGRNEIQV 533

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVGIDV +A++I+IENAE FGLAQLHQLRGRVGRG+  S CI +     SK +
Sbjct: 534 LVSTTVVEVGIDVPNATVIMIENAERFGLAQLHQLRGRVGRGKYQSYCIFMT-ASRSKET 592

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL +L ++ DGF IA EDL+ R  G++ GI+QSG+  F IA      +LL+ A   A+
Sbjct: 593 KERLEILNHSNDGFYIANEDLRLRGPGDLFGIRQSGVLDFKIADVFQDAALLQEANAAAE 652

Query: 665 HILTQDPDLTSVRGQSIRILL 685
            +L +DPDL+  + + ++  L
Sbjct: 653 RLLLEDPDLSQEQHRKLKDHL 673


>gi|154482960|ref|ZP_02025408.1| hypothetical protein EUBVEN_00658 [Eubacterium ventriosum ATCC
           27560]
 gi|149736244|gb|EDM52130.1| hypothetical protein EUBVEN_00658 [Eubacterium ventriosum ATCC
           27560]
          Length = 674

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 216/677 (31%), Positives = 363/677 (53%), Gaps = 23/677 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+  +G+G+K      K      A   +  DLL Y+P  +        I ++  +R   I
Sbjct: 3   LNNLKGIGEKTEKLFYK------AGVEKVNDLLRYYPRYYDVFEEPVLIRDLECDRTQAI 56

Query: 73  TGYISQHSSFQLQKRRPYKIL---LNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            G + +     +++ R  +++   L D  G+ I   +F   +  LK     G      G 
Sbjct: 57  KGTVVR--EVSVKRVRNLQVVTGYLRDERGDAIKATWFN--SPYLKGKLTIGSTFIFRGF 112

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           +K+  +   +  P        +     ++ VY L +GL+ ++ +K + +AL  +    E+
Sbjct: 113 VKENYSNFSIEQPKIFGIAEYNKKKGEMQPVYPLVSGLTNNMVQKAVKQALKLVET-EEF 171

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           + + +  K     + +A   IH P    D      AR+RL +DE       +  ++ +  
Sbjct: 172 LPEKIRNKYGLEGLQQAIEHIHYPT---DKNQLYSARKRLIFDEFFMFIYNIRNLKDKNT 228

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +     I VE K  + ++ N+P+  T +Q+   ++I +D+S    M R++QGDVGSGKT+
Sbjct: 229 EIHNRHILVEPKEVKTLINNLPYELTNAQKRTWEEIKRDISSTKVMNRLIQGDVGSGKTI 288

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV--EIITGNMPQAHRRK 366
           +A  A+  A    GQ  +MAP  +LA+QHY+ + +  +   I V   ++ G+M    +R+
Sbjct: 289 IAFFALITAALNNGQGAMMAPTEVLARQHYDNLIELIKEHNINVNPVVLVGSMTAKEKRE 348

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
           A + I  G A IIIGTHAL Q+ + Y  L +V+ DEQHRFGV+QR  +++K   PH+++M
Sbjct: 349 AYKVIESGDADIIIGTHALIQEKVNYNNLTMVVTDEQHRFGVRQREAISEKGEHPHIMVM 408

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL +   GD+DIS I E PA R PI   ++  +      + +   +++G++ Y
Sbjct: 409 SATPIPRTLAIIMYGDLDISVIDELPANRLPIANCVVGTDYRPNAYDFMTKQIAKGRQVY 468

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKL 544
            ICP +E  +     +V+E    L      S+ I  +HGRM   +K  +MD F N   ++
Sbjct: 469 VICPTVEYSEAVEGENVIEYAEKLKRIMPVSVNIEFLHGRMKPAEKNEIMDRFANNQIQI 528

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRG+  S CI + +    K +
Sbjct: 529 LVSTTVVEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGKYQSYCIFI-NGSGKKEA 587

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL++L  + DGFLIA EDLK R  G+  G++QSG  +F +       ++L+ A +  +
Sbjct: 588 LERLNILCKSNDGFLIANEDLKLRGPGDFFGVRQSGDFEFRLGDIMNDANILKQASEAVE 647

Query: 665 HILTQDPDLTSVRGQSI 681
            IL ++ +++  + + I
Sbjct: 648 LILNEEVEISDKQRKII 664


>gi|78779148|ref|YP_397260.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT
           9312]
 gi|78712647|gb|ABB49824.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
           9312]
          Length = 818

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 242/686 (35%), Positives = 376/686 (54%), Gaps = 29/686 (4%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI 76
           + VGK Y   L+++            DL+ Y P +++D   R KI  +  + + T    I
Sbjct: 131 KSVGKVYKNKLNEL------GIFHIKDLINYFPRTYLDYTNRVKIINLKPDNLYTCIVNI 184

Query: 77  SQHSSFQLQKRRPYKIL---LNDGTGEITLLFF-----YRKTEM---LKNVFFEGRKITV 125
            +    +  K     I+   ++D T  I +  F     +R        K+++  G K+ +
Sbjct: 185 KRFYIHKSTKNSNLSIMNFVVSDETSSIKVTKFLLGRRFRSYSFFSSQKSLYTTGTKLAI 244

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNF---PLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           +GK+K  +     V P        + NF     I  +YSL   LS   F K++   L   
Sbjct: 245 SGKVKLTEYGKTFVDPQIEILKDNNDNFNFSGKILPLYSLAEALSNISFIKLMKSVLIYA 304

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
              PE + +  L   S  S  E+   IH P   +    +   ++RL +DEL   QI  LL
Sbjct: 305 KQYPEILNQKQLDSLSLLSKGESLINIHLPPTQQALIES---KKRLVFDELFLLQIKFLL 361

Query: 243 MRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            ++Q  K  I   +  +  + +  L N PF  TKSQ + + +I +D+S    M R+LQGD
Sbjct: 362 RKRQTNKHVIAKQLPQKKSLLKDFLNNFPFELTKSQVNVLNEIKKDLSNPVPMSRLLQGD 421

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT++A+ ++   +E   Q   M P  +LA+QHY+ + KY     + VE++TGN PQ
Sbjct: 422 VGSGKTIIAIASLLIVIEKNLQGAFMVPTEVLAEQHYKNLLKYLNPLLVSVELLTGNTPQ 481

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R++ L  + +G   I++GTHALF+D + +  L +V++DEQHRFGV QR +L  K    
Sbjct: 482 KRRKEILSNLKNGLVDILVGTHALFEDKVIFNSLAMVVIDEQHRFGVTQRNRLLNKGENT 541

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           ++L MTATPIPRTL L+  GD+D+S+ITE P GR PI T II  + +  + + ++  +++
Sbjct: 542 NLLSMTATPIPRTLALSIYGDLDVSQITELPPGRVPITTKIISEDDLTNLFKIVEDEINK 601

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKN 539
           G++AY I P IE+ ++ N  S  + F  L E   F + + ++HG+++  +K  V++SF  
Sbjct: 602 GRQAYVILPLIEDSEKMNLSSARKTFKHLSEEVFFNNRVGLLHGKLNSQEKNEVINSFLK 661

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L++TTVIEVGIDV +A+I+II N+E FGL+QLHQLRGRVGRG   S C L+    
Sbjct: 662 NEINILVSTTVIEVGIDVPNATIMIIYNSERFGLSQLHQLRGRVGRGSTKSFCYLVTSDK 721

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
               +     VL+ + DGF IAE+DL+ R  G+ILG KQSG+P F++     +  L+E A
Sbjct: 722 NGLENKRLC-VLQKSNDGFYIAEKDLELRGPGQILGYKQSGLPDFVLDNLPNNKFLIEKA 780

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685
           R++A  +++ DPDL       +R +L
Sbjct: 781 REEAIKVVSNDPDLN--ENIVLRNIL 804


>gi|116490527|ref|YP_810071.1| ATP-dependent DNA helicase RecG [Oenococcus oeni PSU-1]
 gi|116091252|gb|ABJ56406.1| ATP-dependent DNA helicase RecG [Oenococcus oeni PSU-1]
          Length = 676

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 228/692 (32%), Positives = 373/692 (53%), Gaps = 28/692 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF  ++   GVG+K +  L ++            DLL Y+P  + D   R   S+  + +
Sbjct: 3   LFDSITELSGVGQKRAEILKQL------GILNIEDLLTYYPFRYDDLESRLP-SQTDDGQ 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            VT  G +S   +      +  +I      G   I++ FF +    LK     G+++ + 
Sbjct: 56  KVTFKGMVSSQPTISRFGYKKSRIAFRLLIGHDNISVSFFNQ--PWLKEQIEIGKEMAIF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVL 185
           G    +      +    I H   D     + A+Y     +     +++I  A ++    +
Sbjct: 114 GTYDAVH---EALKGQRIIHAEND----SLAAIYPSNQAIHQKTIQQLIENAYAKYADQI 166

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            + I + L+      S  +  + +H P  A++      AR   A++E    Q+ L LMR 
Sbjct: 167 NDIIPRRLMLAYRLLSRKKQIHDMHFPDSAEN---AKLARRSAAFEEFFIFQMRLQLMRI 223

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
              K  G  I    +I    +  +P+S T +Q+  I++IL D+ +   M R+LQGDVGSG
Sbjct: 224 SAGKNRGREIEYNSEILNDFIAKLPYSLTDAQKKVIQEILLDLKRPIHMNRLLQGDVGSG 283

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK--YTQNTQIIVEIITGNMPQAH 363
           KT+VA IAM A   AG QA IM P  ILAQQH   +     +    + +E++T  +  A 
Sbjct: 284 KTVVAAIAMLACYSAGLQAAIMVPTEILAQQHAINLSNLYQSAGLNLRIELLTSGLKAAA 343

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  +  G+  I++GTHAL Q  + +Y L L ++DEQHRFGV+QR +L ++   P +
Sbjct: 344 RRQILADLESGEIDIVVGTHALIQADVHFYNLGLAVIDEQHRFGVKQRARLREQGQNPDI 403

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I + P GR+PI T  +  N+ D V + +K  L+ G 
Sbjct: 404 LAMTATPIPRTLAITAYGEMDVSTIDQLPNGRRPIITKWVKSNQFDNVFDWVKTQLAAGA 463

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P IEE +  + ++ V  ++ L E      I ++HGR+++ +K+ V++ F     
Sbjct: 464 QVYVVTPLIEESETLDVQNAVLIYDRLKEELKPYRIGLLHGRLTNDEKQQVINDFSTNRV 523

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+ TTVIEVG+D+ +A+I++I +A+ FG+AQLHQLRGRVGRG++ S  IL+  P  ++
Sbjct: 524 QVLVTTTVIEVGVDIKNATIMVILDADRFGIAQLHQLRGRVGRGKKQSYAILVSDPK-TQ 582

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+  + +T DGF +AE+DLK R  G+++GIKQ+GMP+F +  P     ++E A++ 
Sbjct: 583 YGIDRMEAIVSTNDGFALAEKDLKLRGPGDVIGIKQAGMPEFNVGDPIHDLKMMETAQQS 642

Query: 663 AKHILTQDP-DLTSVRGQSIRIL-LYLYQYNE 692
           A  I +Q   D      + ++ L L +Y+Y +
Sbjct: 643 AIEITSQSNWDADKENAELVKYLSLTMYRYKD 674


>gi|300783675|ref|YP_003763966.1| ATP-dependent DNA helicase RecG [Amycolatopsis mediterranei U32]
 gi|299793189|gb|ADJ43564.1| ATP-dependent DNA helicase RecG [Amycolatopsis mediterranei U32]
          Length = 717

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 213/697 (30%), Positives = 354/697 (50%), Gaps = 46/697 (6%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           G K +  L+      + +     DLL ++P  + +R     I+ +      T+   I + 
Sbjct: 13  GAKTAKALA-----TSLDIETVSDLLRHYPRRYAERGELTDIAGLELGEHATVLARIEKV 67

Query: 80  SSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
           S  +++ R    I  ++ DG   +T  FF +     +     G+     GK+   ++ + 
Sbjct: 68  SKRRMKARNGTIIDMVITDGKRRLTCAFFNQ--AWREKDLVPGKTGLFAGKVSAFRDTLQ 125

Query: 138 MVHPHYIFHNSQDVN------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
           + +P Y   ++++           I  VY    G+      K + + L  L V  + +  
Sbjct: 126 LTNPEYELFDAENEAEAMDNFLAAIIPVYPAAQGMPTWSIAKCVRQVLDVLEVDDDPMPA 185

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           +L +      +  A   IH P      E +   ++RL +DE +A Q+     R       
Sbjct: 186 ELRRLHKLSDLDNALRGIHRPENWAHLEAS---KKRLKWDEAMAVQLIFAQRRHSAISRP 242

Query: 252 GIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
                +V G + +   + +PF  T  Q     +I  D++ ++ M R+LQG+VGSGKT+VA
Sbjct: 243 AKANPHVSGGLMEAFDKRLPFDLTAGQRGIGDEIAADLASEHPMNRLLQGEVGSGKTVVA 302

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-----------IVEIITGNM 359
           L AM   V+ G QA ++AP  +LA QH   +++   +               V ++TG+M
Sbjct: 303 LRAMLQVVDNGRQAAMLAPTEVLAAQHARSLREMLGDLGQAGELGAAENATRVTLLTGSM 362

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT---Q 416
               R+KAL  I  G+A I++GTHAL QD +++  L L +VDEQHRFGV+QR  L     
Sbjct: 363 GAKERKKALLEIVSGEAGIVVGTHALIQDHVEFADLGLAVVDEQHRFGVEQRDALRTRGA 422

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVI 472
             T+PHVL+MTATPIPRT+ +T  GD+++S + E P GR PI T ++P+       + + 
Sbjct: 423 GDTSPHVLVMTATPIPRTVAMTVYGDLEVSALREMPVGRSPIATTVVPVAEKPAWFERIW 482

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--------SIAIIHGR 524
           +R++  + +G +AY +CP+I ++  S+          L               I ++HGR
Sbjct: 483 QRVREEVGKGHQAYVVCPRIGDEPPSDKSDKRPPLAVLEVAPELAHGPLQGLKIDVLHGR 542

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M    K++VM +F  G   +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVG
Sbjct: 543 MPPDGKDAVMRAFSAGELDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVG 602

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK- 643
           RG     C+L+        +  RL+ +++T DGF ++  DL+ R+EG+ILG  QSG    
Sbjct: 603 RGSVPGLCLLVTETLDGTATRERLAAVESTTDGFELSRLDLELRREGDILGAAQSGKRST 662

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
             +      + ++  +R  A+ ++TQDP+LT  RG +
Sbjct: 663 LKLLSLLRDEDVIAASRALAQELVTQDPELTKYRGLA 699


>gi|72161050|ref|YP_288707.1| ATP-dependent DNA helicase RecG [Thermobifida fusca YX]
 gi|71914782|gb|AAZ54684.1| ATP-dependent DNA helicase RecG [Thermobifida fusca YX]
          Length = 733

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 239/737 (32%), Positives = 382/737 (51%), Gaps = 63/737 (8%)

Query: 14  STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73
            + R VG + +  L+              DLL ++P  +  R     +  + E   VT+ 
Sbjct: 6   ESLRVVGDRTAKVLA-----SALGLHTVGDLLRHYPRRYDRRGELTDLDGLVEGEQVTVL 60

Query: 74  GYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
             +   +   +++RR    ++++ DG G ++LLFF+R     ++    GR+    GK+  
Sbjct: 61  AEVLTCTVRPMRQRRGSILEVVVTDGRGRLSLLFFHR-VGWHRDRLLPGRRGLFAGKVSV 119

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL-------IEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
            + R  + HP Y    S D            +  +Y     ++     K +   L  L  
Sbjct: 120 YRGRRQLAHPEYELFESDDAIQERARTYADTLIPIYPATEKITSWKIAKAVATVLDILGD 179

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           LP+ +  DL  +    S++EA+ +IH P   KD++    AR+RL +DE    Q+AL   R
Sbjct: 180 LPDPLPADLRARHGLVSLSEAYRLIHTP---KDWDDVRAARKRLKWDEAFVIQVALAQRR 236

Query: 245 KQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +  +++   P   + G I      N+PF+ T  Q    + I  D++  + M R+LQGDVG
Sbjct: 237 RTAQRQPAQPRPRISGGILDAFDANLPFTLTDGQREVGEVISADLASDHPMHRLLQGDVG 296

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-----------IV 352
           +GKTLVAL AM   V+AGGQA ++AP  +LAQQH+  I +                   V
Sbjct: 297 AGKTLVALRAMLQVVDAGGQAALLAPTEVLAQQHHRSITEMLGPLARAGQLDGAEQATRV 356

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG++  A RR+AL   A G+A I+IGTHAL Q+ + +  L LV++DEQHRFGV+QR 
Sbjct: 357 ALLTGSLGAAARREALLDAASGRAGIVIGTHALLQEQVTFADLGLVVIDEQHRFGVEQRD 416

Query: 413 KLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--- 467
            L  K+T   PHVL+MTATPIPRT+ +T  GD+D+  + + PAGR PI T ++P      
Sbjct: 417 ALRDKSTRGRPHVLVMTATPIPRTVAMTVYGDLDVVALRQLPAGRSPIATHVVPSRDKPH 476

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQI---EEKKESNFRSVVE--------------RFNS 509
            +    ER++  +++G++AY +CP+I    E  E N R   E                + 
Sbjct: 477 YLARAWERIREEVAQGRQAYIVCPRIGGEAEDPEENGRLFAEPDGGETAGRRAPLAVVDL 536

Query: 510 LHEHFTS-----SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           L E          +A +HGR++  +K+ VM +F  G   +L+ATTV+EVG++V +A++++
Sbjct: 537 LAEVEQGPLAGLRLAALHGRLAPDEKDKVMRAFAAGEIDVLVATTVVEVGVNVPNATVMM 596

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ FG++QLHQLRGRVGRG     C+L+        +  RL  + +T DGF ++  D
Sbjct: 597 IMDADRFGVSQLHQLRGRVGRGSLPGLCLLVTEAEEGSPARRRLDAVASTTDGFALSRLD 656

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           L+QR+EG+ILG+ QSG    L       E  + L+  AR +A  ++  DP+L+      +
Sbjct: 657 LEQRREGDILGVAQSGRSGTLRLLTITHEQDEELIGQARAEATALVDADPELSD--HPVL 714

Query: 682 RILLYLYQYNEAFQFIR 698
              L     ++  +++ 
Sbjct: 715 AQALTELLGDDRAEYLE 731


>gi|148242370|ref|YP_001227527.1| ATP-dependent DNA helicase RecG [Synechococcus sp. RCC307]
 gi|147850680|emb|CAK28174.1| ATP-dependent DNA helicase [Synechococcus sp. RCC307]
          Length = 836

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 233/689 (33%), Positives = 379/689 (55%), Gaps = 30/689 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLS  +G+G K +  L+++            DL+ Y+P  ++D     +I  +      T
Sbjct: 141 PLSELKGIGPKLATRLAQL------GLFCLEDLIGYYPRDYVDYSRLVRIQALVPGETAT 194

Query: 72  ITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVFFEG 120
           +   + +  +F   K     IL   L D +G + +  F               + ++  G
Sbjct: 195 VVATVRRVHAFASPKNPNLAILELQLQDPSGRLRISKFMAGKRFTSSGWLHQQQRLYPPG 254

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFKKII 175
             I  +G +K+ +  I +  P            Q      +  +Y+L  GL+ +  ++ +
Sbjct: 255 ATIAASGLVKENRFGISLHDPLLEVLEGPASQVQSPEIGRLVPIYALTEGLTAERLRQAV 314

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
             AL+ +   P+ + +   Q+ +  + A+A + IH P   +  +     R RL +DE L 
Sbjct: 315 AAALAAVRPGPDPLPEPWRQQLTLVAKADARSGIHQPSNREHLD---ACRRRLVFDEFLL 371

Query: 236 GQIALLLMRKQFKKEIGIPINV--EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            Q+ L   R Q+++     +     G+  +     +PF  T +QE  + ++L DM Q   
Sbjct: 372 LQLNLAQRRLQYRQRQAPAVPAGAIGERLKAFRNLLPFQFTGAQERVLNELLADMGQPKP 431

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++QGDVGSGKT+VA+ A+ AA++AG Q   MAP  +LAQQHY  + ++     + V 
Sbjct: 432 MARLVQGDVGSGKTVVAIAALLAAIDAGLQGAFMAPTEVLAQQHYAKLCEWMPQLHVNVA 491

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+ P   RR  L+ +A+GQ H+++GTHA+ +D + + +L LV+VDEQHRFGV QR +
Sbjct: 492 LLTGSTPAKQRRALLQDLANGQLHLLVGTHAVLEDPVDFARLGLVVVDEQHRFGVGQRNR 551

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K   PH+L MTATPIPRTL L+  GD+D+S+I   P GR+PIKT ++   +  +   
Sbjct: 552 LLSKGLQPHLLTMTATPIPRTLALSIHGDLDVSQIDALPPGRQPIKTAVLSSAQRPKADA 611

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKE 531
            ++  ++EG++AY + P +EE ++ + RS V+  + L +       + ++HGR+S  +K+
Sbjct: 612 LIREQINEGRQAYVVLPLVEESEKLDLRSAVDEHSRLQQEVFPDLQVGLLHGRLSSAEKQ 671

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             +++F  G  +LL++TTV+EVG+DV +A++++I++AE FGLAQLHQLRGRVGRG   S 
Sbjct: 672 QAIEAFSRGETQLLVSTTVVEVGVDVPNATVMLIDHAERFGLAQLHQLRGRVGRGAAASH 731

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C LL +   S  +  RL VL  + DGF IAE DL+ R  GE+LG +QSG+P   +A    
Sbjct: 732 C-LLVNDSSSAVAKQRLEVLARSNDGFEIAEMDLRLRGPGEVLGTRQSGLPDLALASLSD 790

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQS 680
             S+L+ AR+ A+ IL  DP L      +
Sbjct: 791 DGSVLDEARQTAQAILDADPTLEQHPHLA 819


>gi|291524768|emb|CBK90355.1| ATP-dependent DNA helicase RecG [Eubacterium rectale DSM 17629]
          Length = 688

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 227/688 (32%), Positives = 356/688 (51%), Gaps = 24/688 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE---E 67
           +P++  +G+G+K     +K+            D+L + P  ++       I E++     
Sbjct: 5   SPITAVKGIGEKTQKAFAKM------GVYTVGDILLHFPRDYVKFPEITDIDELNNVNVS 58

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLND-GT--GEITLLFFYRKTEMLKNVFFEGRKIT 124
               I   I +    +   R   +I L D G+    I L+++  +   LK    +GR + 
Sbjct: 59  STYAIHAVIKKAPVVKNTAR--MQITLQDIGSPGHMIQLVWY--RMPYLKAQLVQGRHLI 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
             G IK    R +M  P        +     ++ VYS+ +G++ +L  K I E LS   +
Sbjct: 115 FYGHIKPKGGRYVMEQPVVYEVQKYEAIRDTLQPVYSVTSGVTNNLIVKTIKETLSHDTL 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L +++ KD+  +  F     A   IH P    DF+    AR RL +DE     + +    
Sbjct: 175 LSDYLPKDIRHRYGFCEYNYAMKQIHFP---DDFDALVEARRRLVFDEFFLFIMGMRYQN 231

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           K+ +K+       +     +++  +P+  T +Q+  I +I QD+     M R++QGDVGS
Sbjct: 232 KKQQKDKNEFEFTDDAFIDRMIEKLPYELTGAQKKTIDEIKQDIKSPYVMQRLIQGDVGS 291

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQA 362
           GKT+VA + MA A + G Q+ IMAP  +LA QHYE          +   V ++TG+M   
Sbjct: 292 GKTIVAFLLMAWASKCGYQSAIMAPTEVLANQHYETFCSLVSQFGLDSPVVLLTGSMTAK 351

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R+A ER+ + +  +IIGTHAL Q+   +  L LVI DEQHRFGV+QR   + K   PH
Sbjct: 352 QKREAYERLENEKNALIIGTHALIQEKADFSNLSLVITDEQHRFGVKQRESFSDKGRKPH 411

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++      +    ++  +  G
Sbjct: 412 ILVMSATPIPRTLAIIIYGDMDISVINEVPAKRLPIKNCVVGTAFRPKAYSFIEEQVRAG 471

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540
            +AY ICP +EE + S   +V +  N L         + +++GRM    K+ VM  F N 
Sbjct: 472 HQAYVICPLVEETENSEGENVTDYANVLKAALPKDITVDVLNGRMKSKAKDEVMQRFANN 531

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L++TTV+EVG++V +A++++IENA+ FGLAQLHQLRGRVGRG+  S CI +     
Sbjct: 532 ESQVLVSTTVVEVGVNVPNATVMMIENADRFGLAQLHQLRGRVGRGDAQSYCIFINSSNS 591

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            K+    L +L  + DGF IA EDLK R  G+  GI+QSG   F +A       +L+ A 
Sbjct: 592 KKSKKR-LEILNKSNDGFYIASEDLKLRGPGDFFGIRQSGDLAFALADVYQDSDVLKEAS 650

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLY 688
           +    +L  DP L +   + ++  +  +
Sbjct: 651 EMVDEVLEADPALCTPENRILKKKMDEF 678


>gi|257054977|ref|YP_003132809.1| ATP-dependent DNA helicase RecG [Saccharomonospora viridis DSM
           43017]
 gi|256584849|gb|ACU95982.1| ATP-dependent DNA helicase RecG [Saccharomonospora viridis DSM
           43017]
          Length = 722

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 220/702 (31%), Positives = 361/702 (51%), Gaps = 49/702 (6%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           VG + +  L+      + +     DLL ++P  +  R     I+ +     VT+   +  
Sbjct: 12  VGARTAKALA-----ASLDLHTVGDLLRHYPRRYARRGELTDIAGLEIGEHVTVLARVEH 66

Query: 79  HSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
            +   ++ R+    ++ + DG   ++  FF  +T   +     GR     GK+   +  +
Sbjct: 67  VTKKPMRSRKGSILEVTITDGQRRLSCAFFGNQT-WRERELRPGRTGLFAGKVTMFRRTL 125

Query: 137 IMVHPHYIFHNSQ-----------DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            + +P Y   ++            D     I  VY    GL      K + + L  L   
Sbjct: 126 QLANPEYELIDTDSTDPADGLSTVDDFLSQIIPVYPAAQGLPSWRIAKAVRQTLELLDEE 185

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           P+ + + L  +   P++ EA + IH PR   D +     R RL +DE LA Q+ L   R 
Sbjct: 186 PDPLPEWLRTEHRLPTLFEALHDIHRPRSDADLQAA---RTRLKWDEALAVQLVLAQRRH 242

Query: 246 QFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
                         G IA+     +PF  T+ Q    + I  D++ K+ M R+LQG+VGS
Sbjct: 243 SSGARPAPECPPRRGGIAEAFDERLPFRLTEGQREVGEAISVDLAGKHPMNRLLQGEVGS 302

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-----------IVE 353
           GKT+VAL AM   V+AG QA ++AP  +LA QH   +++   +               V 
Sbjct: 303 GKTIVALRAMLQVVDAGRQAALLAPTEVLAAQHARSLREMLGDLARAGELGAPEVATRVT 362

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG++P   R++AL   A G A I++GTHAL  + + +  L  V++DEQHRFGV+QR  
Sbjct: 363 LLTGSLPARERKQALLDAASGAAGIVVGTHALLSEHVSFADLAFVVIDEQHRFGVEQRDA 422

Query: 414 LTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--- 467
           L  +    T+PHVL+MTATPIPRT+ +T  GD++ S + + P+GR PI T ++P      
Sbjct: 423 LRTRGSEDTSPHVLVMTATPIPRTVAMTVYGDLETSSLRQLPSGRSPISTTVVPAAEKPA 482

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQI-----EEKKESNFRSVVERFNSLHEHFTS--SIA 519
            +D   +RL+  + +G +AY +CP+I      +K E    +V++    L     +   I 
Sbjct: 483 WLDRAWQRLREEVDKGHQAYVVCPRIGDEPPSDKTERPPIAVLDLAPELESGVLAGLRIG 542

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           ++HGR+   +K++VM +F  G   +L+ATTV+EVG++V +A+++II +A+ FG++QLHQL
Sbjct: 543 VLHGRLPGDEKDAVMRAFAAGELDVLVATTVVEVGVNVPNATLMIIMDADRFGVSQLHQL 602

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           RGRVGRG+    C+L+        +  RL+ +++T DGF +++ DL+ R+EG+ILG  QS
Sbjct: 603 RGRVGRGDVPGLCLLVTEAVDGTAARARLAAVESTTDGFELSKLDLELRREGDILGAAQS 662

Query: 640 GMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
           G      +      + L+  +R+ A+ I+  DP LT   G +
Sbjct: 663 GRRSGLKLLSLLRDEDLIATSRRAAQRIVAADPGLTEYPGLA 704


>gi|325474706|gb|EGC77892.1| ATP-dependent DNA helicase RecG [Treponema denticola F0402]
          Length = 678

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 223/689 (32%), Positives = 359/689 (52%), Gaps = 39/689 (5%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            ++ +  PL+   GVG      L ++            DLL   P  + DR     + + 
Sbjct: 2   LISEIQGPLTNIAGVGAAAVSQLKRL------GVENAGDLLRLFPRDWEDRSKINVLLDW 55

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKI 123
           ++ + + +   ++ H  F   K +  K+++ D  G   +L+ F R    L+  F  G + 
Sbjct: 56  NKFQKIHVEVTVAGHEWFGFGKMKTLKLIVADKNGMTASLICFNR--PFLEKSFPVGARA 113

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V G   +    I      +     +++   ++  VY L +GL     +KII  AL    
Sbjct: 114 FVYGSFYRKYGEIQSSA--FDLEKPENMQSKIL-PVYPLTSGLGQAKLRKIIASALKMYG 170

Query: 184 V-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             +   +   +L+K   P   E   ++H P+   + E     R  L ++E    Q A + 
Sbjct: 171 QGIDSELPDSILKKYGLPPKQEVLFMLHAPKSMAEVE---KGRYALIFEEFFLFQYA-IG 226

Query: 243 MRKQFKKEIGIPINVEGKIAQKI-------------LRNIPFSPTKSQESAIKDILQDMS 289
           MR   ++     +  E  I +               L  + F  T+ Q S   +I +D+ 
Sbjct: 227 MRSIERRGRLPNLEDESNIGKTFKKEPVLTPLQSSLLERLNFKLTQDQLSVCAEINEDLD 286

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
             N M R++QGDVGSGKTLVA +A    +E GGQ   +AP  +LA+QH E   +  +   
Sbjct: 287 GPNPMARLMQGDVGSGKTLVAFLACLKVIEQGGQTAFLAPTELLARQHAENAARLLEPLG 346

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + +  +TGN     R + L+ +  G   +IIGTH+LF   +QY  L L ++DEQHRFGV 
Sbjct: 347 VRLAFLTGNTKAKGRSRLLQELQKGNIDLIIGTHSLFSQGVQYKNLRLAVIDEQHRFGVL 406

Query: 410 QRLKLTQK-------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           QR  + QK         +PH+L+M+ATPIPRTL L+  GD+DIS I   P GRKPI T +
Sbjct: 407 QRSAIIQKGAESNEEKKSPHLLMMSATPIPRTLALSIFGDLDISTIKTMPPGRKPIITYV 466

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAII 521
              ++ + V   +   + +G++AY++ P IEE ++ + +S    F  L   F + S+A+I
Sbjct: 467 AGEDKAERVYNFIGQEILQGRQAYFVYPLIEENEDLSLKSAERMFEELKTGFPNHSLALI 526

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           H ++++ +++ +M  F++G   +L+AT+V+EVG+DV +A+ ++IE+A+ FGL+ LHQLRG
Sbjct: 527 HSKVAEEEQKRIMQEFRSGKLNILVATSVVEVGVDVPNATCMVIEHADRFGLSALHQLRG 586

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG- 640
           RVGRG+  S C L+Y   ++++   RL+V+K T DGF+IAEEDL+ R  G+I G++QSG 
Sbjct: 587 RVGRGDLQSYCFLIYGKKITEDGRARLTVMKETNDGFIIAEEDLRLRGPGDIGGVEQSGY 646

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQ 669
              F IA P     +L+ AR  A  +L Q
Sbjct: 647 HLGFTIADPARDFKILQEARSAAFELLEQ 675


>gi|302525016|ref|ZP_07277358.1| ATP-dependent DNA helicase RecG [Streptomyces sp. AA4]
 gi|302433911|gb|EFL05727.1| ATP-dependent DNA helicase RecG [Streptomyces sp. AA4]
          Length = 717

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 220/697 (31%), Positives = 361/697 (51%), Gaps = 46/697 (6%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           G K +  LS        +     DLL ++P  + +R     I+ +      T+   I + 
Sbjct: 13  GAKTAKALS-----TALDIETVSDLLRHYPRRYAERGELTDIAGLELGEHATVLARIEKI 67

Query: 80  SSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
           S  +++ R      +++ DG   +   FF +     +     G+     GK+   ++ + 
Sbjct: 68  SKRRMKSRNGTILDMVITDGKRRLACAFFNQ--AWREKELAPGKTGLFAGKVTAFRDTLQ 125

Query: 138 MVHPHYIFHNSQDVNFPL------IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
           + +P Y   +++     +      I  VY    G+      K + + L  L V  + + +
Sbjct: 126 LANPEYELLDAEREAEAVDNFLAEIIPVYPAAQGMPTWSIAKCVRQVLDVLEVGEDPMPE 185

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-KKE 250
           DL ++   P +  A   IH P      E +   R RL +DE +A Q+     R     + 
Sbjct: 186 DLRKRHGLPGLERALRGIHRPEDWAHLESS---RHRLKWDEAMAVQLIFAQRRHSAVSRP 242

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
                +V+G +     + +PF  T  Q +   +I  D+S ++ M R+LQG+VGSGKT+VA
Sbjct: 243 AKASPHVDGGLLDAFDKRLPFDLTAGQRAIGDEIAADLSTEHPMNRLLQGEVGSGKTVVA 302

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-----------IVEIITGNM 359
           L AM   V++G QA ++AP  +LA QH   +++   +               + ++TG+M
Sbjct: 303 LRAMLQVVDSGRQAAMLAPTEVLAAQHARSLREMLGDLGRAGELGAAENATRITLLTGSM 362

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT---Q 416
               R+KAL     G+A I++GTHAL QD++Q+  L LV+VDEQHRFGV+QR  L     
Sbjct: 363 GAKERKKALLETVSGEAGIVVGTHALIQDTVQFADLGLVVVDEQHRFGVEQRDALRSRGA 422

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVI 472
            +T+PHVL+MTATPIPRT+ +T  GD++IS + E P GR PIKT ++P+       D V 
Sbjct: 423 DSTSPHVLVMTATPIPRTVAMTVYGDLEISALREMPVGRSPIKTTVVPVAEKPAWFDRVW 482

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--------SIAIIHGR 524
           +R+   + +G +AY +CP+I ++  S+          L               IA +HGR
Sbjct: 483 QRVSEEVGKGHQAYVVCPRIGDEPPSDKSDKRPPLAVLDVAPDLANGALKGLKIAALHGR 542

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   +K++VM +F  G  ++L+ATTV+EVG++V +A+ ++I +A+ FG++QLHQLRGRVG
Sbjct: 543 MPTDEKDAVMQAFGAGKVEVLVATTVVEVGVNVPNATAMVILDADRFGVSQLHQLRGRVG 602

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-K 643
           RG     C+L+       ++  RL+ +++T DGF ++  DL+ R+EG+ILG  QSG    
Sbjct: 603 RGSVPGLCLLVTETLDGTSTRERLAAVESTTDGFELSRLDLELRREGDILGAAQSGKRSG 662

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
             +      + L+  AR  A+ ++T DP+L S+ G +
Sbjct: 663 LKLLSLLRDEDLITEARAQAQELVTGDPELVSLPGLA 699


>gi|319786302|ref|YP_004145777.1| ATP-dependent DNA helicase RecG [Pseudoxanthomonas suwonensis 11-1]
 gi|317464814|gb|ADV26546.1| ATP-dependent DNA helicase RecG [Pseudoxanthomonas suwonensis 11-1]
          Length = 687

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 243/677 (35%), Positives = 370/677 (54%), Gaps = 30/677 (4%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           G + +  L+          +   DL F  P  + DR     I+++       + G +   
Sbjct: 2   GDRLAASLA------ARGLSTVQDLWFLLPLRYEDRTRLTAIADLRSGEPAQVEGTVEAV 55

Query: 80  SSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
                + R   ++ + DG+   + L FF+ +   +   F  G ++   G  +  ++ + +
Sbjct: 56  ER-GFRYRPMLRVAVGDGSHRTVVLRFFHFRAAQVAQ-FRPGVRLRCFGTPRPGQHGLEI 113

Query: 139 VHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP--EWIEKDLL 194
           VHP Y     +        ++ VY    G+     +K+I +AL +LP     E +     
Sbjct: 114 VHPSYRVLAADEDPALGESLDPVYPSIEGVGPATLRKLIGQALEKLPPAEALELLPHGTP 173

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKE 250
                P + E+  ++H P   +D       T PA+ RLA +ELLA  + L   R   ++ 
Sbjct: 174 GLAGLPGLRESLLVLHRPAPGEDLAALGAGTHPAQRRLALEELLAHHLGLRRQRLAQQQL 233

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
               ++  G++A+++   +PF+ T +Q+   + +  D+++ + M R++QGDVGSGKT+VA
Sbjct: 234 RARALDGPGELARRLRAQLPFALTGAQQRVYQQVRADLARPSPMQRLVQGDVGSGKTVVA 293

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +A   AVE GGQ  + AP  +LA+QH   ++ + +   I V  + G +    R  AL  
Sbjct: 294 ALAATLAVEQGGQVALAAPTELLAEQHLANLRAWLEPLGIRVAWLAGKVTGKARAAALAD 353

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT----QKATAPHVLLM 426
           +A G A +++GTHAL Q+ + ++ L+LVIVDEQHRFGVQQRL L          PH L+M
Sbjct: 354 VASGAAQVVVGTHALMQEGVAFHDLVLVIVDEQHRFGVQQRLALRDKGPAHGHVPHQLVM 413

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL +T+  D+D+S I E P GR P++TV +  +R  E++ER++V  +EG++ Y
Sbjct: 414 TATPIPRTLAMTAYADLDVSAIDELPPGRTPVQTVAVSADRRPELVERIRVACAEGRQVY 473

Query: 487 WICPQIEEKKES--------NFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           W+C  IEE +E           ++    F  L        + ++HGRM    K++ M +F
Sbjct: 474 WVCTLIEEAEEPGKGQGPGLQAQAAERTFEQLTAQLPGVRVGLVHGRMKASGKQAAMRAF 533

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+G   LL+ATTVIEVG+DV +AS++IIENAE  GLAQLHQLRGRVGRG   SSC+LLY 
Sbjct: 534 KDGHTDLLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGRGAAASSCVLLYQ 593

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           PPLS  +  RL VL+ T DGF+IAEEDLK R  GE+LG +Q+G+  F IA       LL 
Sbjct: 594 PPLSATARQRLDVLRRTGDGFVIAEEDLKLRGPGELLGTRQTGLAAFRIADLARDADLLP 653

Query: 658 IARKDAKHILTQDPDLT 674
              + A  +LT  PD+ 
Sbjct: 654 KVHQLADRLLTSAPDVA 670


>gi|311898529|dbj|BAJ30937.1| putative ATP-dependent DNA helicase RecG [Kitasatospora setae
           KM-6054]
          Length = 739

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 224/750 (29%), Positives = 373/750 (49%), Gaps = 69/750 (9%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  PL     VG + +  L+      + +     DLL ++P  +++R     + E+ 
Sbjct: 4   MGALDEPLKDL--VGDRTAKVLA-----DSLHLRTVGDLLHHYPRRYVERGQLTSLDELE 56

Query: 66  EERIVTITGYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            +  VT+   I + +    + R+    ++++ DG  +++L+FF +     +     G++ 
Sbjct: 57  VDEHVTVLARIEKVTLIPFRGRKGDRLEVVVTDGRSKLSLVFFNQG--WRQKDLRPGQQG 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVN------FPLIEAVYSLPTGLSVDLFKKIIVE 177
              GK+        +  P Y   + ++ +         +  VY     +        +  
Sbjct: 115 LFAGKVGLFNRTRQLASPDYQLIDDEEGSSAAKQFAGRLIPVYPASAQMPSWKLSLCVEM 174

Query: 178 ALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           AL+  L  + E +  +L  +     + EA  +IH P    D E     + RL +DE    
Sbjct: 175 ALTKHLADVGEPLPAELRAEHGLIPLPEALELIHRPHGQADKERA---QNRLRWDEAFVL 231

Query: 237 QIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL   R        +P     G +       +PF+ T  Q +   +I  D++ ++ M 
Sbjct: 232 QVALAQRRAADSALPAVPRRPVPGGVLDAFDARLPFTLTDGQRAVCAEIFADLATEHPMH 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT------- 348
           R+LQG+VGSGKTLVAL AM A V+ GGQAV++AP  +LAQQH+  I +   +        
Sbjct: 292 RLLQGEVGSGKTLVALRAMLAVVDTGGQAVLLAPTEVLAQQHHRSITEMMGDLAEAGMIG 351

Query: 349 ----QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                  V ++TG+M  A RR AL  +A G+A I+IGTHAL +D +++  L LV+VDEQH
Sbjct: 352 GSEIGTRVALLTGSMGAAARRGALLDMASGKAGIVIGTHALIEDKVRFADLGLVVVDEQH 411

Query: 405 RFGVQQRLKLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           RFGV+QR  L  K   P H+L+MTATPIPRT+ +T  GD++ S + + P+GR PI T ++
Sbjct: 412 RFGVEQRDALRAKGEQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPSGRSPISTHVV 471

Query: 464 PI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV--------------- 504
           P     N +    ER++  + +G +AY +CP+I ++ E   ++                 
Sbjct: 472 PALEKPNFLVRAWERVREEVGKGHQAYVVCPRIGDEDEQPAKAGRKKRGDEPEEVGGGAD 531

Query: 505 -----------ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                      E    L +   +   + I+HGR++   K+ VM  F  G   +L+ATTVI
Sbjct: 532 GEERRPPLAVVETAEKLAKGPLAGLRVEILHGRLAPDAKDDVMRRFAAGEVDVLVATTVI 591

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           EVG++V +++ ++I +A+ FG++QLHQLRGRVGRG     C+L+   P +  +  RL  +
Sbjct: 592 EVGVNVPNSTAMVIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVSDMPAASAARARLDAV 651

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQD 670
             T DGF ++  DL+QR+EG++LG  QSG+     +      + ++  AR +A  ++  D
Sbjct: 652 AGTLDGFALSRIDLEQRREGDVLGQAQSGVKSSLKVLSVLEDEDVIAAARAEATRLVAAD 711

Query: 671 PDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           P L +     +R +L      E  +++  G
Sbjct: 712 PGLAA--HPELRTVLASLLDEERAEYLEKG 739


>gi|325678863|ref|ZP_08158461.1| ATP-dependent DNA helicase RecG [Ruminococcus albus 8]
 gi|324109367|gb|EGC03585.1| ATP-dependent DNA helicase RecG [Ruminococcus albus 8]
          Length = 678

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 240/693 (34%), Positives = 366/693 (52%), Gaps = 25/693 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            +  L  P+    GVG K S          N       DLL++ P  +ID +    I + 
Sbjct: 1   MIKELAKPVMYLSGVGPKKSELYE------NMGVKTVYDLLYHFPRYYIDLNSPQTIRDA 54

Query: 65  SEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
                V + G + +       +R    YK +  D T ++T++ +      L       R+
Sbjct: 55  PLNETVVLKGRVVRKLPEAPIRRGLSVYKAVFTDDTADLTIVIYNAG--YLFKSLEVERE 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             + GK+     R  +  P        D     ++ VY L  G++ +L ++ +  AL+ L
Sbjct: 113 YFLVGKLTGNLIRREINSPQIYPAEGTDP----VQPVYRLTEGITQNLLRQNVHAALTSL 168

Query: 183 -PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              + E +  ++L++    S+  A   IH P      E     ++RL +DELL   + +L
Sbjct: 169 GAQIYEPVPAEILRENELCSLGFAMQNIHFPTDMHTLEMA---KDRLVFDELLTLALGML 225

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +M+ + ++  G  +   G+   +    +PF  T  Q++AI D + DM +   M R++QGD
Sbjct: 226 MMKSRCREHAGCVMT--GESIDEYYSGLPFELTDGQKNAINDCIADMQKNFPMNRLIQGD 283

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT VA  A   A + G Q  +MAP  ILA QHYE +  + +   + V ++TG+M  
Sbjct: 284 VGSGKTAVAAGAAFFAYKNGCQTALMAPTEILAAQHYETLCGFLEPLGVKVVLLTGSMTA 343

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             + K    IA G+  +++GTHAL Q S  + KL LVI DEQHRFGV QR  L  K   P
Sbjct: 344 KKKEKVKAGIAAGEYSVVVGTHALVQASTTFKKLGLVITDEQHRFGVGQRAMLAGKGDNP 403

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+M+ATPIPRTL L   GD+DIS + E P GR+P++T  +     +     +K  L E
Sbjct: 404 HKLVMSATPIPRTLALMIYGDLDISVLKELPKGRQPVETYAVTGKLRERAFGYVKQHLDE 463

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKN 539
           G++ Y +CP IEE    + + V     +L E F     + ++HGR++   KE VM  FK 
Sbjct: 464 GRQGYIVCPMIEESAA-DLQDVKSYAKNLSEGFFKDYRVGLLHGRLAPDKKEKVMKQFKE 522

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               LL++TTV+EVG+DV +A+I++IENA+ FGL+QLHQLRGRVGRG+  SSCIL+   P
Sbjct: 523 HELDLLVSTTVVEVGVDVPNAAIMVIENADRFGLSQLHQLRGRVGRGQFKSSCILITDNP 582

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++    RL +L  + DGF I++EDLK R  G+  G +Q G+PK  IA    +  +L  A
Sbjct: 583 -TEEVVQRLKILSKSHDGFEISQEDLKLRGPGDFFGSRQHGLPKMKIADMSQNMDVLVKA 641

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL-YLYQYN 691
           +  AK IL +DP L + +   ++ L+ +L++ N
Sbjct: 642 QAAAKVILDKDPQLDTPQNSGLKELVEHLFEQN 674


>gi|284047837|ref|YP_003398176.1| ATP-dependent DNA helicase RecG [Acidaminococcus fermentans DSM
           20731]
 gi|283952058|gb|ADB46861.1| ATP-dependent DNA helicase RecG [Acidaminococcus fermentans DSM
           20731]
          Length = 687

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 237/666 (35%), Positives = 367/666 (55%), Gaps = 20/666 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSS--FIDRHYRPKISEIS-EER 68
           P++  +G+G K +L         N N     DLL + P    ++D  +   I E++    
Sbjct: 6   PVTRLKGIGPKKALEFE------NINVVTIGDLLNHFPRQGCYLDYSHIRTIGELTTGGE 59

Query: 69  IVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           +    G I + ++ +  +   Y  I + DGTG   ++ F  +T  +  V+  G ++ V G
Sbjct: 60  MQLFRGTIVRMNNRRSARNLKYATITIGDGTGFAEIVLFGAQT-YMTRVYHTGDEVLVIG 118

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLP 186
           K+   +    +               P I   Y+L   L+ +  +  + +AL+     LP
Sbjct: 119 KVMPGRTAKSVTGASLSHVKEDGAEAPGILPTYALTGSLTQNQVRGAVRQALALARKELP 178

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + + +L+ K F    EA   IH P+  +  E    AR+RL ++EL   Q  LL  R +
Sbjct: 179 ECLPEKILRAKQFLPRLEALENIHFPKSPELLE---KARQRLIFEELFFLQCGLLHHRVE 235

Query: 247 FKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            KK+   I +   G + +K+L N+ FS T SQ+ A ++I  DM     M R++QGDVGSG
Sbjct: 236 IKKDSQGIKMARCGTLVRKVLDNLGFSLTDSQKKAWQEIDDDMQSPEPMNRLVQGDVGSG 295

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT +AL+A+A AVE G Q  +MAP  ILA+QHY+ ++K  +   I   ++TG +    RR
Sbjct: 296 KTALALLALAKAVENGYQGCLMAPTEILAEQHYQEMQKVLEPAGIRTALLTGGLSAKTRR 355

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVL 424
           + LE +A G    ++GT+AL QD + ++ L L I DEQHRFGV QR KL  K+   PHVL
Sbjct: 356 QVLEGLADGSIQAVVGTYALIQDKVVFHSLALAITDEQHRFGVAQRAKLQAKSQYAPHVL 415

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL LT  GD+D+S +   P GRKP++T+     +   V + +   + EG +
Sbjct: 416 VMTATPIPRTLALTVYGDLDVSLMKGLPPGRKPVRTLCYTEEKRPAVYQGMVHQIREGHQ 475

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTC 542
           AY +CP IEE +  + ++  E +  L   +   I   ++HGR+   +K++VM+SF     
Sbjct: 476 AYVVCPLIEESEGVDAKAAEELYEELTSTYLRGIPCGLLHGRLKPEEKDAVMESFARNET 535

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K+LI TTV+EVG++V +A++++IE A+ FGLAQ+HQLRGRVGRG   S C+LL     + 
Sbjct: 536 KVLITTTVVEVGVNVPNATLMVIEGADRFGLAQMHQLRGRVGRGSAQSYCVLLT-ASTNP 594

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL ++++  DGFL+AE+DL+ R  G+  G++Q G+    IA        L  ARK 
Sbjct: 595 VTLERLQIMRSCSDGFLLAEKDLELRGAGQFFGLRQHGLSDLYIADILRDTDTLVEARKA 654

Query: 663 AKHILT 668
           A+  + 
Sbjct: 655 AQWAMG 660


>gi|291528911|emb|CBK94497.1| RecG-like helicase [Eubacterium rectale M104/1]
          Length = 688

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 227/688 (32%), Positives = 354/688 (51%), Gaps = 24/688 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE---E 67
           +P++  +G+G+K     +K+            D+L + P  ++       I E++     
Sbjct: 5   SPITAVKGIGEKTQKAFAKM------GVYTVGDILLHFPRDYVKFPEITDIDELNNVNVS 58

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLND-GT--GEITLLFFYRKTEMLKNVFFEGRKIT 124
               I   I +    +   R   +I L D G+    I L+++  +   LK    +GR + 
Sbjct: 59  STYAIHAVIKKAPVVKNTAR--MQITLQDIGSPGHMIQLVWY--RMPYLKAQLVQGRHLI 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
             G IK    R +M  P        +     ++ VYS+ TG++ +L  K I E LS   +
Sbjct: 115 FYGHIKPKGGRYVMEQPVVYEVQKYEAIRDTLQPVYSVTTGVTNNLIVKTIKETLSHDTL 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L +++ KD+  +  F     A   IH P    DF+    AR RL +DE     + +    
Sbjct: 175 LSDYLPKDIRSRYGFCEYNYAMKQIHFP---DDFDALVEARRRLVFDEFFLFIMGMRYQN 231

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           K+ +K+       +      ++  +P+  T +Q+  I +I QD+     M R++QGDVGS
Sbjct: 232 KKQQKDKNEFEFTDDAFIDGLIDKLPYELTGAQKKTIDEIKQDIKSPYVMQRLIQGDVGS 291

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQA 362
           GKT+VA + MA A + G Q+ IMAP  +LA QHYE          +   V ++TG+M   
Sbjct: 292 GKTIVAFLLMAWASKCGYQSAIMAPTEVLANQHYETFCSLVSQFGLDSPVVLLTGSMTAK 351

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R+A  R+ + +  +IIGTHAL Q+   +  L LVI DEQHRFGV+QR   + K   PH
Sbjct: 352 QKREAYARLENEKNALIIGTHALIQEKADFSNLSLVITDEQHRFGVKQRESFSDKGRKPH 411

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++      +    ++  +  G
Sbjct: 412 ILVMSATPIPRTLAIIIYGDMDISVINEVPAKRLPIKNCVVGTAFRPKAYSFIEEQVRAG 471

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540
            +AY ICP +EE + S   +V +  N L         + +++GRM    K+ VM  F N 
Sbjct: 472 HQAYVICPLVEETENSEGENVTDYANVLKAALPKDITVDVLNGRMKSKAKDEVMQRFANN 531

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L++TTV+EVG++V +A++++IENA+ FGLAQLHQLRGRVGRG+  S CI +     
Sbjct: 532 ESQVLVSTTVVEVGVNVPNATVMMIENADRFGLAQLHQLRGRVGRGDAQSYCIFINSSNS 591

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            K+    L +L  + DGF IA EDLK R  G+  GI+QSG   F +A       +L+ A 
Sbjct: 592 KKSKKR-LEILNKSNDGFYIASEDLKLRGPGDFFGIRQSGDLAFALADVYQDSDVLKEAS 650

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLY 688
           +    +L  DP L +   + ++  +  +
Sbjct: 651 EMVDEVLEADPALCTPENRILKKKMDEF 678


>gi|300854456|ref|YP_003779440.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528]
 gi|300434571|gb|ADK14338.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528]
          Length = 679

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 226/665 (33%), Positives = 366/665 (55%), Gaps = 20/665 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   + + +GVGK     L++            +DLL Y P  +        +   +E  
Sbjct: 3   LSEDIGSLKGVGKVTCKNLNR------CCIFNILDLLLYFPRDYDIISSCSDLKGNTEG- 55

Query: 69  IVTITGYISQHSS--FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V I   ++           +    I+  +  G     +F +    +K  F    +  + 
Sbjct: 56  KVMIDCKVNSIERDIRTRTGKIISTIVFENRNGLFKAKWFNQ--PYVKKKFKIDAEYRIA 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GKI+  +   ++ +P  +  NS       I  +Y L +G++ + F K+I   L+++  + 
Sbjct: 114 GKIQHYRGNSVITNPKVVNINSNSKIEEKILPIYPLKSGITNNTFIKLISYVLTKVS-ID 172

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + K ++ K    S+ +A  IIHNP   ++       ++RL + EL    + +L++++ 
Sbjct: 173 ENLPKWIITKYKLCSLDKAIRIIHNPVNFREL---REGKKRLKFQELFTYSLKILMLKEY 229

Query: 247 F-KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           F K + G+   +  ++ + +   +P+  TK+Q   I++IL D  ++  M R+LQGDVGSG
Sbjct: 230 FGKNKKGVAFKIAPELIE-LKNKLPYKLTKAQNKVIREILIDEKREVPMNRLLQGDVGSG 288

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VALI++   V+ G QAV+MAP  ILAQQHYE   K  +   + +E++ G++   ++ 
Sbjct: 289 KTVVALISIFNVVKNGYQAVLMAPTEILAQQHYEEAMKLLEGFDVEIELLCGSVTPKNKD 348

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           +  E++  G+  IIIGTHAL +D++++  + +V+ DEQHRFGV QR KL  K      L+
Sbjct: 349 EIKEKLKMGEIDIIIGTHALIEDNVEFKNIGIVVTDEQHRFGVIQRSKLVNKGDHVDTLI 408

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L   GD+++S I E P GR+ I T     N  D+V +     +  G++ 
Sbjct: 409 MTATPIPRTLSLYLYGDLNVSTIDELPPGRQKIDTYYRDKNSRDKVYKFALEEIKRGRQV 468

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP +EE +E +  SV + +  L E +  +  I I++G+M    KE  M+ FKNG  K
Sbjct: 469 YVVCPLVEENEELDLSSVEDIYEELKEKYFKNIQIDILYGKMQPKLKEEKMNKFKNGEIK 528

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           ++I+TTVIEVGI+V +A+++IIENAE FGLAQLHQLRGRVGRG   S CIL+        
Sbjct: 529 VIISTTVIEVGINVPNATVMIIENAERFGLAQLHQLRGRVGRGSYKSYCILIADIKNDII 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ +++++ DGF IAE+DLK R  GEI G +Q G  + + +      ++L+ A ++A
Sbjct: 589 -RKRMEIMRSSNDGFFIAEQDLKIRGSGEIFGFRQHGEDELVFSNLVEDINILKEANREA 647

Query: 664 KHILT 668
           K +L 
Sbjct: 648 KRLLA 652


>gi|170691379|ref|ZP_02882544.1| ATP-dependent DNA helicase RecG [Burkholderia graminis C4D1M]
 gi|170143584|gb|EDT11747.1| ATP-dependent DNA helicase RecG [Burkholderia graminis C4D1M]
          Length = 746

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 255/692 (36%), Positives = 377/692 (54%), Gaps = 35/692 (5%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ 85
            L+K+        TR IDL+ + P  + D      I  +    I    G +   +    +
Sbjct: 66  KLAKL------GLTRDIDLVLHLPMRYEDETSLTPIGHLLPGGIAQTEGVVFD-NEIAYR 118

Query: 86  KRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
            RR   + L D  G E+ L F       +K +   G ++ V G ++     + MVHP   
Sbjct: 119 PRRQLLVKLRDDAGDELVLRFLNFYGSQVKQM-AIGARLRVRGDVRGGFFGMEMVHPAVR 177

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQKKSFP 200
             +        +  VY    G++    +K I  ALSR   LPE + + +    LQ    P
Sbjct: 178 VVDEDTPLPQALTPVYPSTAGVTQAYLRKSIDNALSRTS-LPELLPEAVARQWLQPLGVP 236

Query: 201 SIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
           S+ +A   +H+P    D     + T PA  R+ ++ELLA Q++L     + +      + 
Sbjct: 237 SLMDAVRTLHHPDAQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHDERRTRAAPAMP 296

Query: 257 V-----EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                 E  +  ++L+ +PFS TK+QE    +I  D++Q + M R+LQGDVGSGKT+VA 
Sbjct: 297 RRKLGDESALVARLLKALPFSLTKAQERVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAA 356

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  
Sbjct: 357 LAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKEKRAAIEAA 416

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APH 422
           A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV QRL L  KA           PH
Sbjct: 417 ALGTAQLVIGTHAIIQDTVEFARLGLVIVDEQHRFGVAQRLALRAKAQNAADGARDFQPH 476

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R +EVI R++     G
Sbjct: 477 QLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTG 536

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F    
Sbjct: 537 RQVYWVCPLIEESETLQLQTAVETYETLVAALPELKVGLVHGRLAPAEKAAVMDAFTRNE 596

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS
Sbjct: 597 VQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLS 656

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
             +  RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  +    L+E AR+
Sbjct: 657 MTARARLQTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLQNDQWLIEPARE 716

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            A  +L Q P++ +      R L    QY +A
Sbjct: 717 AAAALLEQYPEVVAQ--HLARWLGAREQYLKA 746


>gi|256379970|ref|YP_003103630.1| ATP-dependent DNA helicase RecG [Actinosynnema mirum DSM 43827]
 gi|255924273|gb|ACU39784.1| ATP-dependent DNA helicase RecG [Actinosynnema mirum DSM 43827]
          Length = 733

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 229/729 (31%), Positives = 371/729 (50%), Gaps = 60/729 (8%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           G+K +  L           T   DLL ++P  + +R    +IS +     VT+   +   
Sbjct: 13  GQKTADALE-----TGLGLTTVGDLLRHYPRRYDERGKLTEISGLELGEHVTVQARVKSA 67

Query: 80  SSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
               ++ RR      ++ DGT E+ L+FF R +  ++       K    GK+     ++ 
Sbjct: 68  RLKNMRARRGEMLDAVITDGTSELHLVFFGRGSRKVERELLPNTKAMFAGKVGIFNGKLQ 127

Query: 138 MVHPHYIFHNS---QDVNFPLIE---------AVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           + HP Y   +     D     +           VY    G+      K + + L+    +
Sbjct: 128 LAHPDYEIVDGLTGADDGGGAVTASKFADAFIPVYPAAQGIQSWNVAKCVEQVLAVWDGV 187

Query: 186 PE-WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
            E  + ++L + +   ++ +A   IH P     +   + A++RL +DE LA Q+AL   R
Sbjct: 188 EEDPLPEELRESEGLITLEKALRDIHRPDG---WPAVTVAQQRLKWDEALAVQLALAQRR 244

Query: 245 KQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
                        V G++A      +PF  T  Q++    I +D+S    M R+LQG+VG
Sbjct: 245 HSATARPASACPRVAGRVADAFDARLPFELTAGQQAVGDRIAEDLSATQPMNRLLQGEVG 304

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-----------YTQNTQIIV 352
           SGKT+VAL AM   V++G Q+ ++AP  +LA QH   +++                   V
Sbjct: 305 SGKTMVALRAMLQVVDSGRQSAMLAPTEVLAAQHARSLRELLGDLGQAGELGGAEHATRV 364

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+MP A R+KAL  I  G+A I++GTHAL QD + +  L LV+VDEQHRFGV+QR 
Sbjct: 365 TLLTGSMPAAQRKKALLEIMTGEAGIVVGTHALIQDKVAFADLGLVVVDEQHRFGVEQRA 424

Query: 413 KLTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--- 467
            L+ +     PHVL+MTATPIPRT+ +T  GD+++S + E P GR PIKT ++P      
Sbjct: 425 ALSARPGSAVPHVLVMTATPIPRTVAMTVYGDLEVSALRELPGGRSPIKTSVVPTAEKPQ 484

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER--------------FNSLHE 512
            +D   +R+   + +G + Y +CP+I + ++ + +   E+               N L  
Sbjct: 485 WLDRAWQRIHEEVGKGHQVYVVCPRIGDGEDEDGKPPKEKGDPDKRPPLAVVDVANRLAA 544

Query: 513 HFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  I I+HGR++  DK++VM +F     ++L+ATTV+EVG++V +A++++I +A+ 
Sbjct: 545 GPLKGLRIDILHGRLAPDDKDAVMRAFAANEVQVLVATTVVEVGVNVPNATVMVIMDADR 604

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FG++QLHQLRGRVGRG     C+L+   P +  +  RL  +++T DGF +A+ DL+ R+E
Sbjct: 605 FGVSQLHQLRGRVGRGSAPGLCLLVSEMPGASATMQRLRAVESTLDGFELAQLDLELRRE 664

Query: 631 GEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           G+ILG  QSG      +      +  +E AR  A+ I+ +DPDL +  G +   LL    
Sbjct: 665 GDILGAAQSGTRSGLKMLSLLRDEDTIEAARVVAQEIVERDPDLGAHPGLA--TLLAGVL 722

Query: 690 YNEAFQFIR 698
             E   ++ 
Sbjct: 723 DEERADYLE 731


>gi|145219225|ref|YP_001129934.1| ATP-dependent DNA helicase RecG [Prosthecochloris vibrioformis DSM
           265]
 gi|145205389|gb|ABP36432.1| ATP-dependent DNA helicase RecG [Chlorobium phaeovibrioides DSM
           265]
          Length = 705

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 230/706 (32%), Positives = 373/706 (52%), Gaps = 36/706 (5%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           + L   +G+G K    L +      A  +   +L  Y P  ++DR     I+ +    + 
Sbjct: 5   SSLQALKGLGPKKIEILQE------AGISSLENLFDYWPRRYLDRRAMNSIAGLRMGEMA 58

Query: 71  TITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           T+ G +      Q  +    +K+ L D +G + L +F R           G  + V GK+
Sbjct: 59  TVVGTVRSAGIEQGGRGMARFKVKLADRSGVLDLTWF-RGARYFSRAIVPGDILAVYGKV 117

Query: 130 KKLKNRIIMVHPHY------------IFHNSQDVNFPLIEAVYSLPT-----GLSVDLFK 172
                +  M HP +               +++  N   I  +Y         GL+    +
Sbjct: 118 GYFGRQAQMQHPDFDRLGREGADRDKEGSDAELFNTGRIIPLYPTSEAMKRSGLASRQLR 177

Query: 173 KIIVEALS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
            +I  A   R P   E +   +L+  S   ++EA+  +H P   +  +       R+ + 
Sbjct: 178 GLIARAFDIRQPGGTENLSSGILKAHSLMPLSEAYRELHQPSSPERLQMAE---YRMKWT 234

Query: 232 ELLAGQIALLLMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           EL   Q++  L R+  +     +  +  G+    +   +P+S T +Q++AI+++ +D+  
Sbjct: 235 ELFYAQLSFALRRRALRHTRTAVQFSHSGEFTAALHAALPYSLTGAQKNAIRELYRDLKG 294

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           ++ M R++QGDVGSGKT+VA+ AMA A +   Q+V MAP  ILA QH+  +K+  +   I
Sbjct: 295 ESPMQRLVQGDVGSGKTIVAMFAMALAADNNLQSVFMAPTEILAVQHWLGMKRLFEPLGI 354

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V ++TG  P+  R   L  +  G+ HI +GTHAL Q  + ++ L LV++DEQHRFGV Q
Sbjct: 355 QVCLLTGRQPKKVREALLMELREGRVHIAVGTHALLQHDVDFHSLGLVVIDEQHRFGVLQ 414

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           R  L  KA  PHVLLMTATPIPRTL +   GD+D+S I E P GR+P++T++        
Sbjct: 415 RKTLQDKAQHPHVLLMTATPIPRTLTMGVFGDLDVSLIREMPTGRQPVRTLVQQEADKPR 474

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDI 528
           V E L+  ++ G++ Y + P +EE ++ + ++ VE F+ L         + +IHG+M+  
Sbjct: 475 VFEFLRAQVAAGRQGYIVYPLVEESEKVDLKAAVESFDELSASVFPDLRLGLIHGQMTPD 534

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            KE VM+ F++G   +L+ TTVIEVG+DV +A++++I +AE FGLAQLHQLRGRVGRG +
Sbjct: 535 MKEVVMEQFRSGLIDILVGTTVIEVGVDVANATVMVIMHAERFGLAQLHQLRGRVGRGTQ 594

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIA 647
            SSC LLY   L+ +   RL  + +T DGF+I+E D   R  G +LG +QSG +    +A
Sbjct: 595 ASSCFLLY-AKLTSDGKERLDAMASTTDGFVISEIDAAIRGAGNLLGKEQSGTLSGLKMA 653

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI--LLYLYQYN 691
                  +++ AR+ A  ++ +D +L     + IR   + +L+Q +
Sbjct: 654 DLTRDFDIMQSAREAAFSLVAEDGELREPGHRMIRDWYMRHLHQRD 699


>gi|317131206|ref|YP_004090520.1| ATP-dependent DNA helicase RecG [Ethanoligenens harbinense YUAN-3]
 gi|315469185|gb|ADU25789.1| ATP-dependent DNA helicase RecG [Ethanoligenens harbinense YUAN-3]
          Length = 687

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 235/690 (34%), Positives = 354/690 (51%), Gaps = 31/690 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   + T RGVG K +   +K+            DLL+  P S+ D      IS+ +
Sbjct: 1   MEELARNVRTLRGVGPKRAALFAKL------GVHTVRDLLYTFPRSYEDFTRPVSISQAA 54

Query: 66  EERIVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
              +  I   +S               K  + D +G + ++FF  K      +  EG   
Sbjct: 55  PGEVCCIRAVVSAPIRVTRASGGMLLCKTRVADDSGILEVVFFNNK--YAAELLKEGAAY 112

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            + G++     R  M  P  +         P +  VY+   GLS       +  ALS   
Sbjct: 113 FLYGRVSGTLFRKTMTAPECLPAGCN----PGLRPVYATTAGLSSRAVGAAVQAALSLFA 168

Query: 184 V--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              +PE +   L  +     +  A   IH PR   D +  + AR RL +DELLA  + + 
Sbjct: 169 TRTIPELLPDTLRAEYQLCRVGCALQNIHFPR---DGQALAAARRRLVFDELLALLLGMG 225

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L+R + + +   P  +          ++P++PT +Q  A+ +   DM++   M R+++GD
Sbjct: 226 LLRHR-QADGHAPRCLPDFDFAPFFASLPYTPTGAQLRAVAEAAADMARAVPMNRLIEGD 284

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT VA      A   G Q+ +MAP  ILA QH   +++    + + V ++TG +P 
Sbjct: 285 VGSGKTTVAAALCVLAHAGGLQSALMAPTEILAAQHARNLERLLAPSGLRVGLLTGGLPA 344

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA- 420
           A +R+    IA G   +++GTHAL Q+ + +++L LVI DEQHRFGV QR  L  K +  
Sbjct: 345 AKKREVKAAIADGSVGLVVGTHALLQEDVAFHRLGLVITDEQHRFGVAQRAALAAKGSTD 404

Query: 421 ------PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                 PH+L+M+ATPIPRTL L   GD+D+S + E PAGR+P++T ++       V   
Sbjct: 405 AVDSSSPHMLIMSATPIPRTLSLMIYGDLDVSVLNELPAGRRPVRTYLVGSGLRARVHRF 464

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKES 532
           L+  + +G++AY +CP +E   ES   + V+  + L E   +   + ++HGRM   +KE 
Sbjct: 465 LRTQVEQGQQAYIVCPLVE-ADESELAAAVQLRDGLAETSLAGIPVGLLHGRMPAREKEK 523

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM +F  G  KLL++TTVIEVG+DV  A+++++ENAE FGL+QLHQLRGRVGRG   S C
Sbjct: 524 VMQAFAAGDLKLLVSTTVIEVGVDVPAATVMVVENAERFGLSQLHQLRGRVGRGAAQSHC 583

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           IL+     +     RL  L  T DGF IAE+DLK R  G+  G +Q G+P   IA     
Sbjct: 584 ILISDAEDAAT-RERLQTLCKTADGFAIAEQDLKLRGPGDFFGKRQHGLPALAIADLMGD 642

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
             +L+ AR+ A  +L QDP L+      +R
Sbjct: 643 MDILQEARRAADTLLRQDPALSLKEHAGLR 672


>gi|297588350|ref|ZP_06946993.1| DNA helicase RecG [Finegoldia magna ATCC 53516]
 gi|297573723|gb|EFH92444.1| DNA helicase RecG [Finegoldia magna ATCC 53516]
          Length = 678

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 223/663 (33%), Positives = 350/663 (52%), Gaps = 20/663 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           LS  +G+GKK    L+ +            DLL Y P  + +R     I +  +E    I
Sbjct: 3   LSEIKGIGKKKLEVLNSM------GIFDVNDLLNYFPYRYENRSIIKNIIDTRDEESCVI 56

Query: 73  TGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
                     +  +R       +  D T +I++ +F +    ++N         + GKI 
Sbjct: 57  KVKFISKPVTKYLRRNLNLTSAIAFDDTSKISVSWFNQ--PFIRNQILPNTTYYLYGKIN 114

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189
           +++N+  +  P  I   S      +I  +Y +  G++ +   K I  A+      +   I
Sbjct: 115 RVQNQFKISSP--ILSKSFGGKLGIIYPIYKVKKGVTNNDMIKFIDFAIKHCIDEIKNVI 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              +++     +   A   IH P    D+     AR  L  +E++  Q+A+  M+    +
Sbjct: 173 PYSMIKNYDIENKRNAIKNIHKP---VDYAQFKRARTALVLEEVIIMQLAMKSMKTTLNE 229

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           +  I    + +     ++++ F  TK Q  AIKDI  DM+ + RM R++QGDVGSGKT+V
Sbjct: 230 QNYIKFKTD-ESIDIFIKSLKFELTKGQLEAIKDIESDMTSEKRMNRLVQGDVGSGKTIV 288

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A  A+  +  +G Q+  MAP  ILA QHYE +        + V ++  ++ ++ +   LE
Sbjct: 289 AEAAIFKSYSSGYQSAFMAPTDILATQHYESLSDDFSKFGLKVCLLKSDLTKSEKDSVLE 348

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            I  G   +I+GTHA+ QD +++ KL LVI DEQHRFGV QR K++ K   P VL+MTAT
Sbjct: 349 GIKSGYFDVIVGTHAIIQDFVEFKKLGLVITDEQHRFGVGQRKKISDKGQNPDVLVMTAT 408

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L+  GD+DIS I E P GRK I+T  +  +    +   ++  +  G +AY +C
Sbjct: 409 PIPRTLALSYYGDLDISTINEMPKGRKIIETYSVGFSYEKRIAAFIRKQVENGFQAYVVC 468

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           P IEE +  +  +V E +N L   + S  ++ ++HG+M   +KE VM  F +G  K+L++
Sbjct: 469 PLIEESEALDLENVTELYNRLSSEYFSDINVGMLHGKMKSSEKEEVMKEFVDGKTKILVS 528

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG++V  A++I+I NAE FGL+QLHQLRGRVGR  + S CIL+ +   S     R
Sbjct: 529 TTVIEVGVNVKKANVIVIYNAERFGLSQLHQLRGRVGRSSDQSYCILINNAH-SDEQMER 587

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           ++++  T  GF ++++DL  R  G++LG +QSG+P   IA  E    L+E A     +I 
Sbjct: 588 MNIMVKTNSGFELSQKDLMMRGSGDLLGTRQSGIPLLNIADLEKDYELIEKAAVITDYIY 647

Query: 668 TQD 670
           T D
Sbjct: 648 TND 650


>gi|290889928|ref|ZP_06553015.1| hypothetical protein AWRIB429_0405 [Oenococcus oeni AWRIB429]
 gi|290480538|gb|EFD89175.1| hypothetical protein AWRIB429_0405 [Oenococcus oeni AWRIB429]
          Length = 676

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 228/692 (32%), Positives = 372/692 (53%), Gaps = 28/692 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF  ++   GVG+K +  L ++            DLL Y+P  + D   R   S+  + +
Sbjct: 3   LFDSITELSGVGQKRAEILKQL------GILNIEDLLTYYPFRYDDLESRLP-SQTDDGQ 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            VT  G +S   +      +  +I      G   I++ FF +    LK     G+++ + 
Sbjct: 56  KVTFKGMVSSQPTISRFGYKKSRIAFRLLIGHDNISVSFFNQ--PWLKEQIEIGKEMAIF 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVL 185
           G    +      +    I H   D     + A+Y     +     +++I  A ++    +
Sbjct: 114 GTYDAVH---EALKGQRIIHAEND----SLAAIYPSNQAIHQKTIQQLIENAYAKYADQI 166

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            + I + L+      S  +  + +H P  A++      AR   A++E    Q+ L LMR 
Sbjct: 167 NDIIPRRLMLAYRLLSRKKQIHDMHFPDSAEN---AKLARRSAAFEEFFIFQMRLQLMRI 223

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
              K  G  I    +I    +  +P+S T +Q+  I++IL D+ +   M R+LQGDVGSG
Sbjct: 224 SAGKNRGREIEYNSEILNDFIAKLPYSLTDAQKKVIQEILLDLKRPIHMNRLLQGDVGSG 283

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK--YTQNTQIIVEIITGNMPQAH 363
           KT+VA IAM A   AG QA IM P  ILAQQH   +     +    + +E++T  +  A 
Sbjct: 284 KTVVAAIAMLACYSAGLQAAIMVPTEILAQQHAINLSNLYQSAGLNLRIELLTSGLKAAA 343

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ L  +  G+  I +GTHAL Q  + +Y L L ++DEQHRFGV+QR +L ++   P +
Sbjct: 344 RRQILADLESGEIDIAVGTHALIQADVHFYNLGLAVIDEQHRFGVKQRARLREQGQNPDI 403

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL +T+ G++D+S I + P GR+PI T  +  N+ D V + +K  L+ G 
Sbjct: 404 LAMTATPIPRTLAITAYGEMDVSTIDQLPNGRRPIITKWVKSNQFDNVFDWVKTQLAAGA 463

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P IEE +  + ++ V  ++ L E      I ++HGR+++ +K+ V++ F     
Sbjct: 464 QVYVVTPLIEESETLDVQNAVLIYDRLKEELKPYRIGLLHGRLTNDEKQQVINDFSTNRV 523

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+ TTVIEVG+D+ +A+I++I +A+ FG+AQLHQLRGRVGRG++ S  IL+  P  ++
Sbjct: 524 QVLVTTTVIEVGVDIKNATIMVILDADRFGIAQLHQLRGRVGRGKKQSYAILVSDPK-TQ 582

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+  + +T DGF +AE+DLK R  G+++GIKQ+GMP+F +  P     ++E A++ 
Sbjct: 583 YGIDRMEAIVSTNDGFALAEKDLKLRGPGDVIGIKQAGMPEFNVGDPIHDLKMMETAQQS 642

Query: 663 AKHILTQDP-DLTSVRGQSIRIL-LYLYQYNE 692
           A  I +Q   D      + ++ L L +Y+Y +
Sbjct: 643 AIEITSQSNWDADKENAELVKYLSLTMYRYKD 674


>gi|226355891|ref|YP_002785631.1| ATP-dependent DNA helicase RecG [Deinococcus deserti VCD115]
 gi|226317881|gb|ACO45877.1| putative ATP-dependent DNA helicase RecG [Deinococcus deserti
           VCD115]
          Length = 780

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 233/696 (33%), Positives = 364/696 (52%), Gaps = 24/696 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           P  A +S     G   +  L+ +            D+L  +P    DR   P ++E+ E 
Sbjct: 102 PPDAEVSRLD-TGPGGARKLTSL------GLHTLRDVLHAYPHRHEDRRALPDLAEVEEG 154

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGT---GEITLLFFYRKTEMLKNVFFEGRKIT 124
           + VT+ G +   S    +      I +   T   G +   +F +    ++    EG ++ 
Sbjct: 155 QKVTVEGTVVAKSRRSPRPG-MLVIEVTLETPSGGRVKATWFNQ--PWVERQLREGARLV 211

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           +TG++K+    + +   H    +    +     I  VY    G+S +  ++    +L  +
Sbjct: 212 LTGRVKRFGRNVQLGVEHLETVDGAQDSLSTGRIVGVYDSKEGISQEFLRRAAFRSLQSV 271

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
           P L +++     QK     +++A   IH P    D    S A  RL +DE L  ++ +LL
Sbjct: 272 P-LDDYLPAHWRQKYGITDLSDALWGIHFP---ADEAQLSRANARLRFDEYLFLELRMLL 327

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
              +     G      G   ++    +PF  T +Q   + +I  DM  + +M R++QGDV
Sbjct: 328 Q-GEDAVLQGKRFEARGDDIERFESVLPFRMTNAQRRVLLEITDDMRSERQMARLVQGDV 386

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT VA  A+  AV  G Q  +MAP  ILA+QHY  +  Y     + V ++ G M   
Sbjct: 387 GSGKTAVAACALYLAVRDGYQGALMAPTEILARQHYNNLVGYLNQLDVRVGLLIGAMAAK 446

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            + +   RIA G+  +++GT AL Q+++Q+  L L ++DE+HRFGVQQR KL      P 
Sbjct: 447 QKLEMQTRIARGEVDVVVGTQALIQENVQFDNLGLAVIDEEHRFGVQQRRKLLAGR--PD 504

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+M+ATPIPR+L LT+ GD+++S I E P GR PI+T +I      +    +   + EG
Sbjct: 505 VLVMSATPIPRSLALTAYGDLELSVIDEMPPGRTPIETKLIQDTHRTQAYGFVMRQIREG 564

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGT 541
           ++A+ +   I+E +     +  +  + L      + I ++HGRMS  +K+ VM+ F+   
Sbjct: 565 RQAFVVTALIDENENLELLAATQLADDLKTILPEARIDLLHGRMSAAEKDHVMERFRARE 624

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             LL++TTVIEVG+DV +A++++IENAE FGLAQLHQLRGRVGRG   S C+L+     S
Sbjct: 625 FDLLVSTTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGSAQSYCVLIAG-EHS 683

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           K +  RL +++ + DGF+IAE DLK R  GEI G +QSG+P   +A      S++E AR+
Sbjct: 684 KKTRQRLGIIEGSTDGFVIAEADLKLRGPGEIRGTRQSGIPDLRLADLANDTSIIEQARE 743

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
            AKHIL  DP L   R Q +R  L    ++ AF+ +
Sbjct: 744 LAKHILAHDPRLEHPRLQYLRAELQSRSHSVAFREV 779


>gi|15806915|ref|NP_295639.1| ATP-dependent DNA helicase RecG [Deinococcus radiodurans R1]
 gi|6459700|gb|AAF11469.1|AE002030_8 DNA helicase RecG [Deinococcus radiodurans R1]
          Length = 784

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 229/695 (32%), Positives = 358/695 (51%), Gaps = 22/695 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL AP       G   +  LS +            D+L  +P    DR   P ++++ E 
Sbjct: 106 PLDAPAERLN-TGPGGARKLSTL------GLHTLRDVLHAYPHRHEDRRALPDLADVEEG 158

Query: 68  RIVTITGYISQ-HSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITV 125
           + VT+ G +               +I+L   +G  +   +F +    ++    EG ++ +
Sbjct: 159 QKVTVMGTVVSKFRRAPRPGMLILEIVLETPSGGRVKATWFNQ--PWVEKQLREGARLVL 216

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           TG+ KK   +  +   H    +  + +     I  VY    G+S +  +K   +AL   P
Sbjct: 217 TGRAKKFGRQTQLSVEHMETVDKAEGSLSTRRIVGVYDAKEGISQEFLRKAAYKALEAAP 276

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            L +++     +K     + +A   IH PR             RL +DE L  ++ +LL 
Sbjct: 277 -LDDYLPAHWRRKYGLTDLGDALWGIHFPRDEAQLARAHG---RLRFDEYLFLELRMLLQ 332

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
             +     G      G+   K    +PF  T +Q   + +I  DM    +M R++QGDVG
Sbjct: 333 -GEDAVLQGKRFEARGEDINKFEAALPFRFTNAQRRVLLEITDDMRSDQQMARLVQGDVG 391

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT VA  A+  AV  G Q  +MAP  ILA+QHY  +  Y     + V ++ G M    
Sbjct: 392 SGKTAVAACALYLAVRDGYQGALMAPTEILARQHYANLCGYLGQLDVRVGLLIGAMTPKA 451

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           + +   RIA G   +++GT AL Q+++Q+  L L +VDE+HRFGVQQR +L   A+ P V
Sbjct: 452 KLEMQTRIAEGDVDVVVGTQALIQENVQFDNLGLAVVDEEHRFGVQQRRRLL--ASRPDV 509

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPR+L LT+ GD+++S I E P GR PI+T +I      +    +   + +G+
Sbjct: 510 LVMSATPIPRSLALTAYGDLELSIIDELPPGRTPIETKLIQDTARQQAYGFVMGQIRQGR 569

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +AY +   IEE +     +  +  + L      + I ++HG+MS  +K+ VM+ F+    
Sbjct: 570 QAYVVTALIEENENLELLAATQLADDLKTILPEARIDLLHGKMSAAEKDYVMERFRAHEF 629

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L++TTVIEVG+DV ++++++IENAE FGLAQLHQLRGRVGRG   S C+++     S 
Sbjct: 630 DILVSTTVIEVGVDVPNSTVMVIENAERFGLAQLHQLRGRVGRGSLQSYCVMIAG-ETSL 688

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL +++ + DGF+IAE DLK R  GEI G +QSG+P   +A       ++E AR+ 
Sbjct: 689 KTRKRLKIIEGSTDGFVIAEADLKLRGPGEIRGTRQSGIPDLRLADLANDADIIEQAREL 748

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
           AKHIL  DP L   R Q +R  L     + A++ +
Sbjct: 749 AKHILANDPRLEHPRLQYLRSELQNRSSSVAYREV 783


>gi|317057047|ref|YP_004105514.1| ATP-dependent DNA helicase RecG [Ruminococcus albus 7]
 gi|315449316|gb|ADU22880.1| ATP-dependent DNA helicase RecG [Ruminococcus albus 7]
          Length = 678

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 238/695 (34%), Positives = 369/695 (53%), Gaps = 25/695 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            L+ L  P+    GVG K S    K+            DLL++ P  +ID +    + + 
Sbjct: 1   MLSELAKPVMYLSGVGPKKSELYEKL------GVKTVYDLLYHFPRYYIDLNEPQAVRDA 54

Query: 65  SEERIVTITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
                V + G + +       +R    YK ++ D T +IT++ +      +      G +
Sbjct: 55  PLNEQVVLKGRVVRKLPEGNIRRGLTVYKAIVTDDTADITIVIYNAG--FMFKALEVGHE 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             + GK+     R  +  P        D     ++ VY L  GL+    ++ +  AL  L
Sbjct: 113 YYLVGKLTGNMLRREINSPQIYPVAGTDP----VQPVYRLTEGLTQKQLRQNVHTALGAL 168

Query: 183 P-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              + E +  D+++++   S++ A   +H P      E     + RL +DELL   + +L
Sbjct: 169 DGSIYEPLPNDVVREQGLCSLSYALQNVHYPTDMHTLELA---KSRLVFDELLTLALGML 225

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +M+ + +   G  +N   +   +    +PF  T  Q+SAI D ++DM +   M R++QGD
Sbjct: 226 MMKNRSRDNTGCQMN--DESVDEYFSALPFELTAGQKSAINDCIEDMRKPFPMNRLIQGD 283

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT VA  A   A + G Q  +MAP  ILA QHY+ +K + +   + V ++TG++  
Sbjct: 284 VGSGKTAVAAGAAYFAYKNGCQTALMAPTEILAGQHYDTLKAFLEPLGVKVVLLTGSLTP 343

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             + K    IA G+ ++I+GTHAL Q S ++ +L LVI DEQHRFGV+QR  L  K   P
Sbjct: 344 KKKEKIKAEIAAGEYNVIVGTHALVQASTEFKRLGLVITDEQHRFGVEQRAMLAGKGDHP 403

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+M+ATPIPRTL L   GD+DIS + E P GR+P++T  +     +     +K  L E
Sbjct: 404 HKLVMSATPIPRTLALMIYGDLDISVLKELPKGRQPVETYAVTGKLRERAFGYVKQYLEE 463

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKN 539
           G++AY +CP IEE  +S+ R V      + E   S   + ++HGR+S   KE VM  FK 
Sbjct: 464 GRQAYIVCPMIEES-DSDLRDVKSYAKEISEGAFSGYRVGLLHGRLSAESKEKVMKKFKA 522

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L++TTV+EVG+DV +A++++IEN++ FGL+QLHQLRGRVGRGE  S CIL+   P
Sbjct: 523 HELDILVSTTVVEVGVDVPNAAVMVIENSDRFGLSQLHQLRGRVGRGEHKSVCILITDNP 582

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++    RL +L +  DGF I+++DLK R  G+  G +Q G+PK  IA       +L  A
Sbjct: 583 -TEEVVQRLKILSSCHDGFEISQQDLKLRGPGDFFGSRQHGLPKMKIADMSQDMDVLVRA 641

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLY-LYQYNEA 693
           ++ AK IL +D  L     + +R L+  L++   A
Sbjct: 642 QETAKQILCKDTHLDKGENRGLRELVERLFEQETA 676


>gi|218296433|ref|ZP_03497176.1| ATP-dependent DNA helicase RecG [Thermus aquaticus Y51MC23]
 gi|218243227|gb|EED09758.1| ATP-dependent DNA helicase RecG [Thermus aquaticus Y51MC23]
          Length = 767

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 224/682 (32%), Positives = 366/682 (53%), Gaps = 22/682 (3%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
            +    LS++            D+L ++P  + DR   P +  + + +  T++  +    
Sbjct: 102 PQSRKKLSEL------GLHTVRDVLHHYPRRYEDRRALPGVRYLEDGQKATLSVKVLAKE 155

Query: 81  SFQLQKRRPYKILLN--DGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
             +  K+    + +   D  G  + L++F +    + +   EG  + VTG++++ +N + 
Sbjct: 156 LVRTPKKGMQLVQVKAMDAWGWRLALVWFNQ--PWVLSQIEEGATLIVTGRVQR-RNGVQ 212

Query: 138 MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197
           ++  H+    ++ ++   I  +Y    G+     ++ +  AL     LP+ +E    +  
Sbjct: 213 LLVEHFEDEGTESLSTGRIVPIYPAKEGVGQAFLRRTVHRALEMALPLPDPVEP-YREGL 271

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
           +    ++A   IH P   +D E    A  RL +DE L  ++  LL        +G    V
Sbjct: 272 ALMPYSQALRAIHFP---EDEEALKKALLRLKFDEYLLLELKALL--DAGGVVLGRAFRV 326

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           E    +   + +PF  T++QE  + +I QDM    +M R+LQGDVGSGKT+VA  A+  A
Sbjct: 327 EEAWVEAFKKALPFPLTRAQERVMAEIAQDMQSPRQMARLLQGDVGSGKTVVAAFALYLA 386

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
              G Q  +MAP  ILA+QH++ + +Y     + VE++ G+ P   R   L R+  G+A 
Sbjct: 387 AMNGAQGALMAPTEILARQHFQNLTRYLFPLGVRVELLLGSTPAREREAILARLRSGEAQ 446

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLV 436
           + +GTHAL Q+ +++  L L +VDE+HRFGV QR  L + A T P VL+M+ATPIPR+L 
Sbjct: 447 VAVGTHALIQEGVEFQDLGLAVVDEEHRFGVLQRRALLKMAKTPPDVLVMSATPIPRSLA 506

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           LT  GD+++S + E P GR P+KT ++P     +     +  + +G + + + P IEE  
Sbjct: 507 LTLYGDLEVSVLDEMPPGRTPVKTKVLPHRLRLQAYAFAREEIKKGHQVFVVAPAIEES- 565

Query: 497 ESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           E + ++    +  L      + IA++HG+M   +KE+VM++F+ G   LL++TTVIEVG+
Sbjct: 566 ELDLKAATLLYEELQGLLPEARIALLHGKMPAREKEAVMEAFRQGAYDLLVSTTVIEVGV 625

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+  A++II+ENAE FGLAQLHQLRGRVGRG      I L     S+ +  RL VL+ + 
Sbjct: 626 DIPRATLIIVENAERFGLAQLHQLRGRVGRGGLPGYAIFLAG-EASQKTMKRLKVLEAST 684

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           DGF IAE DLK R  GE+ G +QSG P+  +        ++E AR  AK I+ +DPDL+ 
Sbjct: 685 DGFYIAEMDLKLRGPGELRGTRQSGYPELRLGDLAEDTEVIERARALAKAIVEEDPDLSL 744

Query: 676 VRGQSIRILLYLYQYNEAFQFI 697
            + Q+++  L        F+ +
Sbjct: 745 PKHQALKEELRAQAERIGFREV 766


>gi|326693689|ref|ZP_08230694.1| ATP-dependent DNA helicase RecG [Leuconostoc argentinum KCTC 3773]
          Length = 676

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 221/678 (32%), Positives = 357/678 (52%), Gaps = 25/678 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +    GVG K    L ++      +     DLL Y P  + D   R   SE  +   VT 
Sbjct: 8   VDILPGVGPKRLAALHEL------DIFTIEDLLGYFPFRYEDLGERRP-SETLDGEKVTF 60

Query: 73  TGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +S      +  K+      L      + + FF +    L      G+++ V G    
Sbjct: 61  KGVVSAPPVVTRFGKKNQTHFGLLIEHENVRVTFFNQ--PWLAQNIAVGQEVAVYGTYNA 118

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIE 190
            K  +  +          +     ++ +Y     ++    + ++  A + +   +P+ + 
Sbjct: 119 AKASLTGMKMI-------NATANALDPIYPASKQITAKTIRNLVELAWADVRGTMPDLVP 171

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             L QK            +H P    D      AR   A++E    Q+ L L++   +K 
Sbjct: 172 LSLRQKYRLLDRNTQIEHMHFPT---DMPAAKAARRSAAFEEFFIFQMRLQLLKLADQKF 228

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            G  I  + +  +K    +PF+ T +Q+  I +ILQD  +   M R+LQGDVGSGKT+VA
Sbjct: 229 AGEGIAYDAQALKKFEAGLPFTLTTAQKKVIAEILQDQHRPRHMNRLLQGDVGSGKTVVA 288

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRKAL 368
            +AM A V AG QA IMAP  ILAQQH   + +      +   +E++T  +  A RR+ L
Sbjct: 289 AMAMYAVVTAGLQAAIMAPTEILAQQHALNLAQLFDRAGVQLRIELLTSGLRAAARRQIL 348

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E + +G+  I++GTHAL Q  + ++ L L ++DEQHRFGV QR  L +    P +L MTA
Sbjct: 349 EDLENGEIDILVGTHALLQPDVAFHHLGLAVIDEQHRFGVNQRAALRENGVNPDILAMTA 408

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I + P+GRK I T  +  N++D  +  +K  L +G +AY +
Sbjct: 409 TPIPRTLSITAYGEMDVSIIDQLPSGRKAIATKRLSHNQLDAALAFVKQQLDDGAQAYIV 468

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            P IEE +  + ++    + ++       +I ++HGR+S+ +K+ +M  FK    ++L+A
Sbjct: 469 TPLIEESESLDVQNATAMYEAMQLELPEYTIGLLHGRLSNDEKKQLMADFKANRIQVLVA 528

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG+DV +ASI++I +A+ FGLAQLHQLRGRVGRG   S  +L+  P  +     R
Sbjct: 529 TTVIEVGVDVPNASIMLILDADRFGLAQLHQLRGRVGRGSRQSYTLLIADPK-TDYGTAR 587

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L  +  T +GF++A++DL+ R  G+ILG KQSG+P+F++  P    +++EIA+++A  ++
Sbjct: 588 LDAMVATTNGFVLAQKDLELRGSGDILGTKQSGVPEFVVGDPIKDLTMMEIAQQEAIALV 647

Query: 668 TQDPDLTSVRGQSIRILL 685
           +Q+        Q++   L
Sbjct: 648 SQENWDQQPENQALVAYL 665


>gi|238924032|ref|YP_002937548.1| ATP-dependent DNA helicase RecG [Eubacterium rectale ATCC 33656]
 gi|238875707|gb|ACR75414.1| ATP-dependent DNA helicase RecG [Eubacterium rectale ATCC 33656]
          Length = 688

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 224/688 (32%), Positives = 353/688 (51%), Gaps = 24/688 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE---E 67
           +P++  +G+G+K     +K+            D+L + P  ++       I E++     
Sbjct: 5   SPITAVKGIGEKTQKAFAKM------GVYTVGDILLHFPRDYVKFPEITDIDELNNVNVS 58

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLND-GT--GEITLLFFYRKTEMLKNVFFEGRKIT 124
               I   I +    +   R   +I L D G+    I L+++  +   LK    +GR + 
Sbjct: 59  STYAIYAVIKKAPVVKNTAR--MQITLQDIGSPGHMIQLVWY--RMPYLKAQLVQGRHLI 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
             G IK    R +M  P        +     ++ VYS+ +G++ +L  K I E LS   +
Sbjct: 115 FYGHIKPKGGRYVMEQPVVYEVQKYEAIRDTLQPVYSVTSGVTNNLIVKTIKETLSHDTL 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L +++ KD+  +  F     A   IH P    DF+    AR RL +DE     + +    
Sbjct: 175 LSDYLPKDIRHRYGFCEYNYAMKQIHFP---DDFDALVEARRRLVFDEFFLFIMGMRYQN 231

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           K+ +K+       +      ++  +P+  T +Q+  I +I QD+     M R++QGDVGS
Sbjct: 232 KKQQKDKNEFEFTDDAFIDGLIDKLPYELTGAQKKTIDEIKQDIKSPYVMQRLIQGDVGS 291

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQA 362
           GKT+VA + MA A + G Q+ IMAP  +LA QHYE          +   V ++TG+M   
Sbjct: 292 GKTIVAFLLMAWASKCGYQSAIMAPTEVLANQHYETFCSLVSQFGLDSPVVLLTGSMTAK 351

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +R+A   + + +  +IIGTHAL Q+   +  L LVI DEQHRFGV+QR   + K   PH
Sbjct: 352 QKREAYASLENEKNALIIGTHALIQEKADFSNLSLVITDEQHRFGVKQRESFSDKGRKPH 411

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+M+ATPIPRTL +   GD+DIS I E PA R PIK  ++      +    ++  +  G
Sbjct: 412 ILVMSATPIPRTLAIIIYGDMDISVINEVPAKRLPIKNCVVGTAFRPKAYSFIEEQVRAG 471

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNG 540
            +AY ICP +EE + S   +V +  + L         + +++GRM    K+ VM  F N 
Sbjct: 472 HQAYVICPLVEETENSEGENVTDYADVLKAALPKDITVDVLNGRMKSKAKDEVMQRFANN 531

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L++TTV+EVG++V +A++++IENA+ FGLAQLHQLRGRVGRG+  S CI +     
Sbjct: 532 ESQVLVSTTVVEVGVNVPNATVMMIENADRFGLAQLHQLRGRVGRGDAQSYCIFINSSNS 591

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
            K+    L +L  + DGF IA EDLK R  G+  GI+QSG   F +A       +L+ A 
Sbjct: 592 KKSKKR-LEILNKSNDGFYIASEDLKLRGPGDFFGIRQSGDLAFALADVYQDSDVLKEAS 650

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLY 688
           +    +L  DP L +   + ++  +  +
Sbjct: 651 EMVDEVLEADPALCTPENRILKKKMDEF 678


>gi|225016666|ref|ZP_03705858.1| hypothetical protein CLOSTMETH_00575 [Clostridium methylpentosum
           DSM 5476]
 gi|224950630|gb|EEG31839.1| hypothetical protein CLOSTMETH_00575 [Clostridium methylpentosum
           DSM 5476]
          Length = 694

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 233/686 (33%), Positives = 360/686 (52%), Gaps = 24/686 (3%)

Query: 4   SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
           + L      +    GVG+K +    K+            +LL   P S+ID      + +
Sbjct: 17  AMLELFERSVQELHGVGQKRAQLYGKL------GIATIGELLHLFPRSYIDVTNPIPVPQ 70

Query: 64  ISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
                   +   + +  + Q  ++    +K+   DG G + +  F  +     +      
Sbjct: 71  TVIGEPAAVRVRVYKKLAEQRIRKGLSLFKVYATDGAGNLAITIFNNRYAY--DGLKLEE 128

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
           +  + GK+        M  P  +           ++ VY L  GL+  +      EALS 
Sbjct: 129 EYLLYGKVGGNFVMREMNSPLILEAGGDL----TMQPVYPLTEGLTSKMVITNQKEALSM 184

Query: 182 LPVLP-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           +     E + K++L++    S   A   IH P           AR+RL ++ELL  Q+ L
Sbjct: 185 VTGGAYEPLPKEILEQYQLCSFNFALQNIHFPVDPFSL---GLARKRLVFEELLTWQLGL 241

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L++++      + ++      +  L+ +PF+ T +Q+  I + L D S    M R++QG
Sbjct: 242 ALVKQKNSTSTDVTLS--DTSIEPFLQALPFTLTSAQQRVIGECLADASSTVPMNRLVQG 299

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA     A  + G Q+ +MAP  ILA QH++ + +      +   ++TG++ 
Sbjct: 300 DVGSGKTMVAAALCYAMAKNGYQSAMMAPTEILASQHFKTLSQLLSPLGLRTCLLTGSLT 359

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           +  +    E+I   +  +++GTHAL QDS ++  L LVI DEQHRFGV QR KL  K   
Sbjct: 360 KKQKELLKEQIRAKEVDVVVGTHALVQDSTEFASLGLVITDEQHRFGVNQRQKLVDKGEH 419

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PHVL+M+ATPIPRTL L   GD+DIS I E P GR+ I T  IP ++ +     +K  L 
Sbjct: 420 PHVLVMSATPIPRTLALILYGDLDISIIDELPKGRQKIDTFFIPPSKRERAFGFIKQHLD 479

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538
           EG++AY +CP IE   E    +V      L E   +  ++ ++HG+M   +KE VM +F+
Sbjct: 480 EGRQAYIVCPMIE-NGEQEVANVTGYAQRLREGVFAGYTLGVLHGKMKAEEKEQVMRAFQ 538

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  +LL+ATTV+EVG+DV +A I++IENAE FGL+QLHQLRGRVGRGE  SSCIL+   
Sbjct: 539 TGETQLLVATTVVEVGVDVPNAVIMMIENAEMFGLSQLHQLRGRVGRGEHKSSCILVSGL 598

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             ++ + +RL  + +T DGF IAE+DLKQR  G+  G +Q G+P F IA      S+L+ 
Sbjct: 599 K-TEENLSRLGTMCSTSDGFAIAEQDLKQRGPGDFFGKRQHGLPAFKIADMVEDLSVLKE 657

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRIL 684
            ++ A+ I++QDP L  +  + +R L
Sbjct: 658 TQRLAREIVSQDPGLAELGHKGLRGL 683


>gi|168335018|ref|ZP_02693133.1| RecG-like helicase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 677

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 226/666 (33%), Positives = 360/666 (54%), Gaps = 18/666 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   ++T  G+G++ +    ++            +L+ Y P    DR     I     + 
Sbjct: 2   LKESITTLSGMGEQTAKRFYRL------GIYTIAELMEYFPKKHEDRSKVTPIEAAVLDE 55

Query: 69  IVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
              I   + +    +    R      ++DGT ++T++FF  +   +KN F  G      G
Sbjct: 56  ANNIVATVIKEPILKKVNNRVMVSFEVSDGTEQMTIIFF--EQPYMKNNFHVGLIYNFYG 113

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLP 186
            +K   N++ MV P Y           LI  VY+    LS  + +K I  A+   +  + 
Sbjct: 114 TVKLKYNKLNMVSPSYQTLEKYTQQTKLI-PVYASTYQLSQFIIRKHIKNAIDIAICNVS 172

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + I  D++ K +     +A   IH P+    F      R RL ++EL   Q++L +++  
Sbjct: 173 DVIPTDIVAKHNLMPKRQAIENIHFPKDDASFVEA---RRRLVFEELFLLQLSLYILKSD 229

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           F+++    +       +  +  +PF  T +Q+  +K++  D+       R++QGDVGSGK
Sbjct: 230 FRQKQAGTVKQSPVDLEAFVETLPFKLTAAQQRVVKEVAADLKLLGAANRLIQGDVGSGK 289

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA IA+   V  G Q+ +MAP  +LA+QH+EF++K  +   I V ++TG+  +  +  
Sbjct: 290 TVVAAIALFIVVRNGFQSTLMAPTEVLARQHFEFLEKTFEAFDISVALLTGSTTKKQKMG 349

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE++A G   I++GTHAL +D++ Y KL LVI DEQHRFGV+QRL L QK   P VL M
Sbjct: 350 LLEKLAKGDIDILVGTHALIEDNVVYAKLGLVITDEQHRFGVRQRLSLAQKGDFPDVLAM 409

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L   GD+DIS I E P GR PIKT  +       + + ++  +S G++ Y
Sbjct: 410 TATPIPRTLALILYGDMDISTIDELPPGRTPIKTNAVDSRYYARIYKFMREHVSNGRQCY 469

Query: 487 WICPQIEEKKE-SNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
            ICP +EE ++  N + V+     L     +  ++  +HG+M   DK  +M+ F NG   
Sbjct: 470 IICPMVEENEKVENVKDVISYAEKLQAEEFAGLAVEYLHGKMKAKDKNKIMERFANGEID 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTV+EVG++V +A+II+IENAE FGL+QLHQLRGRVGRG   S CIL+     +K+
Sbjct: 530 ILVSTTVVEVGVNVPNATIILIENAERFGLSQLHQLRGRVGRGSYESFCILV-SDSYNKD 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL +++ T DGF IA+ DL+ R  GE  G +Q G+ +  IA       +L++ +++ 
Sbjct: 589 TRARLKIMQETTDGFKIADTDLQLRGSGEFFGTRQHGLLEMKIANMYTDIDVLKVVQQEV 648

Query: 664 KHILTQ 669
           ++I+  
Sbjct: 649 ENIMEA 654


>gi|323524791|ref|YP_004226944.1| ATP-dependent DNA helicase RecG [Burkholderia sp. CCGE1001]
 gi|323381793|gb|ADX53884.1| ATP-dependent DNA helicase RecG [Burkholderia sp. CCGE1001]
          Length = 731

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 244/656 (37%), Positives = 361/656 (55%), Gaps = 33/656 (5%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ 85
            L+K+        TR IDL+ + P  + D      I  +    I    G +   +    +
Sbjct: 51  KLAKL------GLTRDIDLVLHLPMRYEDETSLTPIGHLLPGGIAQTEGVVFD-NEIAYR 103

Query: 86  KRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
            RR   + L D  G E+ L F       +K +   G ++ V G ++     + MVHP   
Sbjct: 104 PRRQLLVKLRDDAGDELVLRFLNFYGSQVKQM-AIGARLRVRGDVRGGFFGMEMVHPAVR 162

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK----DLLQKKSFP 200
             +        +  VY    G++    +K I  ALSR   LPE + +    + LQ    P
Sbjct: 163 VVDEDTPLPQALTPVYPSTAGVTQAYLRKAIDNALSRTS-LPELLPEAVAREWLQPLGVP 221

Query: 201 SIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
           S+ +A   +H+P    D     + T PA  R+ ++ELLA Q++L    ++ +      + 
Sbjct: 222 SLMDAVRTLHHPGAQSDETALIDGTHPAWVRIKFEELLAQQMSLKRAHEERRTRAAPAMP 281

Query: 257 V-----EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                 E  +  ++L+ +PFS TK+QE    +I  D++Q + M R+LQGDVGSGKT+VA 
Sbjct: 282 RRKLGDEAALVARLLKALPFSLTKAQERVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAA 341

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +A A A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  
Sbjct: 342 LAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKEKRAAIEAA 401

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---------TAPH 422
           A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV QRL L  KA           PH
Sbjct: 402 ALGTAQLVIGTHAIIQDTVEFARLGLVIVDEQHRFGVAQRLALRAKALNAADGARDFQPH 461

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+M+ATPIPRTL +T   D+D+S I E P GR PI T ++   R +EVI R++     G
Sbjct: 462 QLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTG 521

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++ YW+CP IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F    
Sbjct: 522 RQVYWVCPLIEESETLQLQTAVETYETLVAALPELKVGLVHGRLAPAEKAAVMDAFTRNE 581

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS
Sbjct: 582 VQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLS 641

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             +  RL  ++ T DGF IA  DL+ R  GE LG +QSG      A  +    L+E
Sbjct: 642 MTARARLQTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLQNDQWLIE 697


>gi|296135161|ref|YP_003642403.1| ATP-dependent DNA helicase RecG [Thiomonas intermedia K12]
 gi|295795283|gb|ADG30073.1| ATP-dependent DNA helicase RecG [Thiomonas intermedia K12]
          Length = 719

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 234/697 (33%), Positives = 367/697 (52%), Gaps = 34/697 (4%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
                 L+++          + DL  + P  + D      +  + +  IVT    + +  
Sbjct: 33  PARPTPLARL------GLHTYWDLALHLPLRYEDETRLTPLGALRDGEIVTTDAVVIETQ 86

Query: 81  SFQLQKRRPYKILLND---GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
                 RR   + L D   G   +TL  F+     LK     G ++ V G++++      
Sbjct: 87  VQGRAPRRQLLVRLQDPEAGDAILTLRLFHFYPNQLK-TLQPGVRLRVHGQVRQGLFGWE 145

Query: 138 MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197
           MVHP +   ++       +  VY    G+     +K +  AL RL V  + + ++ L + 
Sbjct: 146 MVHPTWKLVDANAPLPNTLTPVYPTTAGVPQSYLRKAVAGALERL-VWRDTVPQEELTRH 204

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWT---SPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
             P +  +   +H P  A          PA+ RL +DELLA Q+A    R Q ++     
Sbjct: 205 HLPDLPSSLRTLHAPPAAALPALEAGAHPAQRRLKFDELLAQQLAQQQARAQRQRWKAPM 264

Query: 255 INVEGKIA---QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           +    +      ++   IPF+ T +QE  + +I  D++Q   M R+LQGDVGSGKT+VA 
Sbjct: 265 LPAAPEAHSLPAQLRAAIPFTLTAAQERCVAEIAADLAQTAPMHRLLQGDVGSGKTVVAA 324

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +A A AV +G Q  +MAP  ILA QH   +  + +   + V  ++G+  +  R  AL+R+
Sbjct: 325 LAAAQAVASGWQCALMAPTEILAAQHARKLADWLEPLGVGVAWLSGSQTKKEREAALQRV 384

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--------APHV 423
           A G+A +++GTHA+ Q  +++ +L L IVDEQHRFGV QRL L              PH+
Sbjct: 385 ASGEAQLVLGTHAVIQAQVRFARLGLAIVDEQHRFGVAQRLALRDSLRAGTQGSGLQPHL 444

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL +   GD+D+S I   P GR P++T ++  +R DE+I R+  + ++G+
Sbjct: 445 LMMSATPIPRTLAMALFGDLDVSTIDVLPPGRTPVRTSVVSTDRRDELIARVGALTAQGR 504

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-------IAIIHGRMSDIDKESVMDS 536
           +AYW+CP +EE +  + ++ V     L     +        + ++HGRM   +K + M +
Sbjct: 505 QAYWVCPLVEESETLDLQNAVATHAELSAALATRPGQGAVQVGLLHGRMKAQEKRATMQA 564

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   LL+ATTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S C+LL+
Sbjct: 565 FSAGEIGLLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAQSDCVLLF 624

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLS  +  RL  ++   DGF +A++DL+ R  GE+LG++QSG+P    A       LL
Sbjct: 625 TSPLSPTARERLGAMRELTDGFALAQKDLELRGPGELLGLRQSGVPGLRYADLAQDIDLL 684

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           E AR  A+ +L   P+  + R  + R L   + +  A
Sbjct: 685 EAARDTAQRLLVAAPE--AARQHAARWLGEGFDWLSA 719


>gi|292669654|ref|ZP_06603080.1| DNA helicase RecG [Selenomonas noxia ATCC 43541]
 gi|292648451|gb|EFF66423.1| DNA helicase RecG [Selenomonas noxia ATCC 43541]
          Length = 688

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 232/654 (35%), Positives = 352/654 (53%), Gaps = 26/654 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L   +S  RGVG K S   +++            DLL Y+P ++ D+    +I+++   
Sbjct: 2   ELTDSISKVRGVGVKKSAAFARL------GIRTVYDLLTYYPRAYEDQSSITRIADLRAG 55

Query: 68  RIVTITGYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
              T+ G I Q +  Q ++R       L+ DGTG +  ++F ++   LK+   EGR+I +
Sbjct: 56  MRATVLGVIHQVTDRQTRRRGFTVLTALIGDGTGYMQAVWFNQR--FLKSKLREGRRILL 113

Query: 126 TGKIKK-LKNRIIMVHP-----HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           TGK          +          +       +   I  +Y+   GL     ++++  AL
Sbjct: 114 TGKTDYAYNGGGQLALSQITSFELLGARDHAESLLGILPIYAATEGLPQKQLRQMMEYAL 173

Query: 180 SR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           ++    L E +   + Q+      A+AF  IH P++ ++      AR RLA++EL   Q 
Sbjct: 174 AQSADKLTETLPPRIRQEYDLIGRADAFRRIHFPKREEEL---RAARRRLAFEELYLIQC 230

Query: 239 ALLLMRKQ-FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            LL ++K+  +++ GI     G +A ++L  +PF  T+ Q     +I +DM     M R+
Sbjct: 231 GLLALKKRTAEEQEGIAHRPNGVLAARVLEALPFELTEDQAKVWGEIARDMESPLPMRRL 290

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT VAL+A+    E G Q  +MAP  ILA+QHY++++       I V  ++G
Sbjct: 291 VQGDVGSGKTAVALLALVKTTENGYQGALMAPTEILARQHYDYLQTLLTPLGIRVGFLSG 350

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQ 416
            + +  R +    +A     II+GTHAL QD + +  L LV+ DEQHRFGV QR  L  +
Sbjct: 351 RLTKKERAEIDAALAAHTVDIIVGTHALIQDHVAFDALGLVVTDEQHRFGVAQRTALEKK 410

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               P VL+MTATPIPRT+ LT  GD+D+S+I   P GR+PI+T +       ++   ++
Sbjct: 411 SGGTPDVLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRRPIRTFLRDETARGKIYAFVR 470

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVM 534
             +  G++AY +CP IE  +ES+  S  E +  L        +  ++HGRM   +KE VM
Sbjct: 471 REIESGRQAYVVCPLIEASEESDLPSAEEVYEELSRSIFRGIACGLLHGRMKSAEKEEVM 530

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F     KLL++TTVIEVG++V +ASI+++E+AE FGLAQLHQLRGRVGRG   S CIL
Sbjct: 531 NGFYANRIKLLVSTTVIEVGVNVPNASILVVEHAERFGLAQLHQLRGRVGRGSYDSYCIL 590

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
           +     S     RL V++ T DGF +AEEDL+ R  G+  G  Q G+    IA 
Sbjct: 591 I--AGRSAAPQERLQVIEQTSDGFRLAEEDLRLRGPGQFFGAMQHGLGDLKIAD 642


>gi|227515691|ref|ZP_03945740.1| DNA helicase RecG [Lactobacillus fermentum ATCC 14931]
 gi|227085939|gb|EEI21251.1| DNA helicase RecG [Lactobacillus fermentum ATCC 14931]
          Length = 678

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 228/696 (32%), Positives = 364/696 (52%), Gaps = 24/696 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   +   +GVG K    L+ +            DLL ++PS + D      ++   
Sbjct: 1   MRSLQDSVGQLKGVGPKTVENLATL------GIKTVGDLLTHYPSRYDDF-APTDLTVAK 53

Query: 66  EERIVTITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           +++ VT+ G +      S +  ++ R    L+    G + +++F +    LK        
Sbjct: 54  DKQKVTVKGTVVSEPLMSRYGYRRSRMSFRLVVGQAGVVNVVYFNQ--PYLKQQVEPNHD 111

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           +TV G     + +I+      +  +S+        A Y     +     +K+I +A  + 
Sbjct: 112 VTVLGTWDAPRQQILGTK--LVVADSKAEAVG---ATYPANKHVRQTTLRKLIRQAFDQY 166

Query: 183 P-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
             V+   +   L Q+       E    +H P      E     +   A++E    ++ L 
Sbjct: 167 QNVIATLLPISLRQRYQLMERREMIKQMHFPTDTTMAEAA---KRTAAFEEFFLFELRLQ 223

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R+  +KE G+ I       +  ++ IPF  T +Q+  + +I +D+    +M R+LQGD
Sbjct: 224 AIRRANRKEEGLQILYNNTELRDFIKTIPFELTAAQKRVVNEICRDLRAPYQMNRLLQGD 283

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA IA+ AAV AG Q  +MAP  ILA QH E + K    T + V ++TG +  
Sbjct: 284 VGSGKTIVAAIAVMAAVLAGYQVALMAPTEILAAQHAEKLAKVFSGTHVEVALLTGALTA 343

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
               +  + I  G  ++I+GTHAL Q+ + Y  L LVI+DEQHRFGV QR +L +K   P
Sbjct: 344 KQHDQLAKAIKAGDVNLIVGTHALIQNGVDYANLGLVIIDEQHRFGVNQRQQLREKGEHP 403

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL +T+ G++D+S I E PAGR+PIKT  +  N+    ++ L   L  
Sbjct: 404 DVLAMTATPIPRTLAITAYGEMDVSVIDELPAGRQPIKTTWLKGNQGQSALDFLDQQLMA 463

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
           G +AY + P IEE +  + ++  + +    EHF  T  + ++HGRM++ +K  VM  F+ 
Sbjct: 464 GAQAYVVSPLIEESENLDVKNATDLYARFKEHFGPTYQVGLLHGRMNNDEKAVVMKDFQA 523

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++++ATTVIEVG+D  +A++++I +A+ FGLAQLHQLRGRVGRG+  S C+L+  P 
Sbjct: 524 GKVQVMVATTVIEVGVDNPNATVMLIYDADRFGLAQLHQLRGRVGRGKRQSYCLLVADPK 583

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +     R+  +  T DGF +A++DL+ R  G++LG +QSGMP F +  P     +L+IA
Sbjct: 584 -TDEGKARMETMVATTDGFEVAQKDLELRGAGDVLGDRQSGMPDFKVGDPVGDLKMLQIA 642

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           R DA ++L           Q + + L  +Q    F 
Sbjct: 643 RADAGNLLATPGWDQKDENQPLVLYLQRHQLETHFD 678


>gi|189500980|ref|YP_001960450.1| ATP-dependent DNA helicase RecG [Chlorobium phaeobacteroides BS1]
 gi|189496421|gb|ACE04969.1| ATP-dependent DNA helicase RecG [Chlorobium phaeobacteroides BS1]
          Length = 719

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 237/713 (33%), Positives = 373/713 (52%), Gaps = 36/713 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  RGVG + +  L      G +      DL  + P  ++DR     +S + E    T
Sbjct: 19  PVTCIRGVGPRKAALL------GQSGIETIADLYDFFPRRYLDRRIIKPVSGLVEGEPAT 72

Query: 72  ITGYISQH-SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           + G +++              + L D +GE+ L++F R    +     +G  + V GK+ 
Sbjct: 73  VVGTVTKVYRQHARPGHSRLNVTLLDKSGELELVWF-RSVSHVSAAVRQGDTLAVHGKVV 131

Query: 131 KLKNRIIMVHPHYI---------FHNSQDVN----FPLIEAVYSLPT-----GLSVDLFK 172
               +  M HP Y            +  DV+       I  VY         G+     +
Sbjct: 132 FFGRQRQMQHPEYERLNPDAHGSTEDGDDVSALLYTGKIVPVYPSSEARKGAGMGPKGMR 191

Query: 173 KIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
            ++ +A +  P    E + + ++ +     I +A+ +IH P   +  E       R  + 
Sbjct: 192 GLLEKAFTLNPPCFRENLSEKIISQYGLLPINQAYRMIHFPSSPEMLERA---LYRFKWT 248

Query: 232 ELLAGQIALLLMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           EL   Q+   + R   K++   +     G   +++  ++PF  T++Q+ A+++I +D+  
Sbjct: 249 ELFYAQLFFAIRRTALKEQNRAVRFERSGLFTKRLYASLPFVMTEAQKKAVREIYRDLRS 308

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
             RM R+LQGDVGSGKTLVA+ AMA A + G QA  MAP  ILA QHY  +KK      +
Sbjct: 309 GIRMNRLLQGDVGSGKTLVAMFAMALAADNGLQAAFMAPTEILAFQHYMVLKKNEGALGL 368

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            +  ++G      RR  L+R+  G+ HI++GTHA+ ++ +++ KL L ++DEQHRFGV Q
Sbjct: 369 RIGFLSGRQKAKERRDVLDRLEDGRLHILVGTHAVIEEGVRFKKLGLAVIDEQHRFGVLQ 428

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           R  L  KA +PH+LLMTATPIPRTL +   GD+D++ I + P GRK + T +    + +E
Sbjct: 429 RKALQDKAGSPHILLMTATPIPRTLAMGVYGDLDVTVIDQLPFGRKRVVTRMRSERQKNE 488

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDI 528
           V+  L+  + +G++AY + P +EE K+ + ++  E F  L +       I ++HG+M   
Sbjct: 489 VLAVLRQEIEKGRQAYIVYPLVEESKKIDLKAATESFLQLRDELLPGLRIGLLHGQMRSE 548

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +KESVM+ F++GT  LL+ TTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG E
Sbjct: 549 EKESVMERFRSGTLDLLVGTTVIEVGVDVPNASVMVIEHAERFGLAQLHQLRGRVGRGAE 608

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIA 647
            S C LL H  +  ++  RL+ ++   DGF ++E D   R  G +LG +QSG M    +A
Sbjct: 609 QSYCFLL-HAAVGGDARERLAAMERNHDGFRLSEIDASLRGTGNVLGKEQSGTMTGMKVA 667

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
                  ++  AR+ A   + QD  L+      IR   Y    +E F     G
Sbjct: 668 DIVRDYDIMCSAREAAIETVEQDSALSDHAHDMIREQ-YRRLCHERFALADIG 719


>gi|184155717|ref|YP_001844057.1| ATP-dependent DNA helicase RecG [Lactobacillus fermentum IFO 3956]
 gi|183227061|dbj|BAG27577.1| ATP-dependent DNA helicase RecG [Lactobacillus fermentum IFO 3956]
          Length = 678

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 228/696 (32%), Positives = 363/696 (52%), Gaps = 24/696 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   +   +GVG K    L+ +            DLL ++PS + D      ++   
Sbjct: 1   MRSLQDSVGQLKGVGPKTVENLATL------GIKTVGDLLTHYPSRYDDF-APTDLTVAK 53

Query: 66  EERIVTITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           +++ VT+ G +      S +  ++ R    L+    G + +++F +    LK        
Sbjct: 54  DKQKVTVKGTVVSEPLMSRYGYRRSRMSFRLVVGQAGVVNVVYFNQ--PYLKQQVEPNHD 111

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           +TV G     + +I+          + D     + A Y     +     +K+I +A  + 
Sbjct: 112 VTVLGTWDAPRQQILGTK-----LVAADSKAEAVGATYPANKHVRQATLRKLIRQAFDQY 166

Query: 183 P-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
             V+   +   L Q+       E    +H P      E     +   A++E    ++ L 
Sbjct: 167 QNVIATLLPISLRQRYQLMERREMIKQMHFPTDTTMAEAA---KRTAAFEEFFLFELRLQ 223

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R+  +KE G+ I       +  ++ IPF  T +Q+  + +I +D+    +M R+LQGD
Sbjct: 224 AIRRANRKEEGLQILYNNAELRDFIKTIPFELTAAQKRVVNEICRDLRAPYQMNRLLQGD 283

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA IA+ AAV AG Q  +MAP  ILA QH E + K    T + V ++TG +  
Sbjct: 284 VGSGKTIVAAIAVMAAVLAGYQVALMAPTEILAAQHAEKLAKVFSGTHVEVALLTGALTA 343

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
               +  + I  G  ++I+GTHAL Q+ + Y  L LVI+DEQHRFGV QR +L +K   P
Sbjct: 344 KQHDQLAKAIKAGDVNLIVGTHALIQNGVDYANLGLVIIDEQHRFGVNQRQQLREKGEHP 403

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL +T+ G++D+S I E PAGR+PIKT  +  N+    ++ L   L  
Sbjct: 404 DVLAMTATPIPRTLAITAYGEMDVSVIDELPAGRQPIKTTWLKGNQGQSALDFLDQQLRA 463

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
           G +AY + P IEE +  + ++  + +    EHF  T  + ++HGRM++ +K  VM  F+ 
Sbjct: 464 GAQAYVVSPLIEESENLDVKNATDLYARFKEHFGPTYQVGLLHGRMNNDEKAVVMKDFQA 523

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++++ATTVIEVG+D  +A++++I +A+ FGLAQLHQLRGRVGRG+  S C+L+  P 
Sbjct: 524 GKVQVMVATTVIEVGVDNPNATVMLIYDADRFGLAQLHQLRGRVGRGKRQSYCLLVADPK 583

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +     R+  +  T DGF +A++DL+ R  G++LG +QSGMP F +  P     +L+IA
Sbjct: 584 -TDEGKARMETMVATTDGFEVAQKDLELRGAGDVLGDRQSGMPDFKVGDPVGDLKMLQIA 642

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           R DA ++L           Q + + L  +Q    F 
Sbjct: 643 RADAGNLLATPGWDQKDENQPLVLYLQRHQLETHFD 678


>gi|154496256|ref|ZP_02034952.1| hypothetical protein BACCAP_00541 [Bacteroides capillosus ATCC
           29799]
 gi|150274339|gb|EDN01416.1| hypothetical protein BACCAP_00541 [Bacteroides capillosus ATCC
           29799]
          Length = 694

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 229/689 (33%), Positives = 365/689 (52%), Gaps = 31/689 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + L    G+G   +  L+K+            +LL Y+P S+ DR     I    EE+
Sbjct: 5   LESGLKELPGIGDARAAKLAKL------GLATVENLLGYYPRSYEDRTKISTIDGAPEEQ 58

Query: 69  IVTITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            V +  ++++       ++     K+ + D T  +T+ FF +    +++    G      
Sbjct: 59  PVCVAAFVAETPRVSHIRKGLELVKVKVADETAVMTVTFFNQ--AYVRDALRLGESYIFY 116

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VL 185
           GK+++   +  M +P +    +       I  VY L  G+S +L   +    +      +
Sbjct: 117 GKVERQGRQRQMTNPVFEREGAARF-TGCIMPVYPLTAGISNNLLAGLARRCVDECARQV 175

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           PE + +++    S   +  +   IH P   +  E    AR RL ++E       + L+R 
Sbjct: 176 PELLPEEVRLAHSLAQVEFSCRNIHFPESWEALE---IARRRLIFEEFFLLSCGMSLLRT 232

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
              +  G    VE +     L  +PFS T +Q   + +   DM+    M R++QGDVGSG
Sbjct: 233 GRDRGAGPA--VENRDLTPFLSLLPFSFTGAQRRTVDEAAADMASGRPMNRLVQGDVGSG 290

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT VA      A + G Q+ +MAP  ILA+QH+  +        + V ++TG+M  A +R
Sbjct: 291 KTAVAAACAWLAWQGGWQSAMMAPTEILAEQHFRSLSSLLSPAGMRVGLLTGSMKAAEKR 350

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APH 422
           KA   +A G+  +++GTHAL  + +++ KL LVI DEQHRFGV QR  L  KA     PH
Sbjct: 351 KAKAALAAGEVDLMVGTHALLSEGVEFRKLGLVITDEQHRFGVAQRAALAAKADGGLRPH 410

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+M+ATPIPRTL L   GD+D+S I E P GR P++T ++  ++   +   ++ +++EG
Sbjct: 411 VLVMSATPIPRTLALIVYGDLDVSVIDELPPGRTPVETFVVGEDKRQRMYGFVRKLVAEG 470

Query: 483 KKAYWICPQIEEKKE--------SNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKES 532
           ++AY +CP +EE  +        ++ ++V     +L         +A +HG+M   DK++
Sbjct: 471 RQAYIVCPAVEENPDGEDAFGGLADLKAVTTYAETLKTQVFPDLRVAFVHGKMKPKDKDA 530

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM +F  G   +L++TTVIEVG+DV +A+++I+ENAE FGL+QLHQLRGRVGRG+  S C
Sbjct: 531 VMSAFSAGDIDVLVSTTVIEVGVDVPNAALMIVENAERFGLSQLHQLRGRVGRGKHKSYC 590

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +L+     S++S  RL VL +T DGF IAEEDLK R  G+  G +Q G+P+  IA     
Sbjct: 591 VLMTATH-SQDSRARLKVLASTTDGFKIAEEDLKLRGPGDFFGSRQHGLPQLHIADLAGD 649

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             LL+ A++ A+ +L  DP L   + + +
Sbjct: 650 VRLLKEAQQAARDLLEADPGLEKRKHRPL 678


>gi|153004936|ref|YP_001379261.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter sp. Fw109-5]
 gi|152028509|gb|ABS26277.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter sp. Fw109-5]
          Length = 908

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 232/702 (33%), Positives = 355/702 (50%), Gaps = 18/702 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+            L +               L + P ++ DR    +I E+    
Sbjct: 215 LATPLAELPRTHPSTRAQLEE------RGRLTVEQGLEFFPKAYQDRTQVRRIVELRAGD 268

Query: 69  IVTITGYISQHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
              + G +      +++  RP  K+ L+D +G + L+FF          F  G  +  +G
Sbjct: 269 EGIVHGTVGHVRVQRMRNGRPLLKVGLSDPSGALELVFFN-PPPWRARQFAAGDALLCSG 327

Query: 128 KIKKLKNR-IIMVHPHYIFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           K+ +   R   M  P      + D  +F  I  +Y+ P        +K++   +     L
Sbjct: 328 KVTEGFGRRFQMSQPEVEKLQAGDSASFGRIVPIYAGPADYQHPALRKLVKRLVDEYAPL 387

Query: 186 P-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIAL 240
             + +   +  ++   S AEA    H P    D     E  +P   RL ++EL   Q+AL
Sbjct: 388 AVDDLPPQVRARRGLLSRAEALRDAHFPGAGTDLVAAAERATPGFRRLVFEELFFLQLAL 447

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L R+  + E GI  +       + L  +PF  T +Q  A+ +I +DM++   M R+LQG
Sbjct: 448 ALRRRGVRAEAGIAFDASPAAIARALELLPFRLTGAQARALDEIARDMARPEPMNRLLQG 507

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT VA  AM  AV +G QA IM P  +LA+QH   +  + Q T + V ++     
Sbjct: 508 DVGSGKTAVAFAAMMLAVRSGHQAAIMVPTELLAEQHARTLAGWLQGTGVEVALVAAAAR 567

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++   R+A G A I +GTHAL +  + + +L LV+VDEQHRFGV QR KL  K   
Sbjct: 568 GKGQKETRARVADGTARIAVGTHALLEQDVAFERLGLVVVDEQHRFGVLQRAKLISKGHR 627

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL+MTATPIPRTL L   GD+D SKI E P GR P+ T +   ++     E  +  L 
Sbjct: 628 PDVLVMTATPIPRTLALAFYGDLDQSKIGELPPGRTPVATKVYGDSQRRGAYEVARRELE 687

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKN 539
            G++ Y + P + E ++S+          L   F    + ++HG++   +K++VMD F+ 
Sbjct: 688 AGRQVYVVYPLVAESEKSDLADATSGAEELRRVFAGHEVGLLHGKLKADEKQAVMDRFRT 747

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH-P 598
           G  ++L+ATTVIEVG+DV +AS++I+E+AE FGL+QLHQLRGRVGRG   S C+L+ H  
Sbjct: 748 GALRVLVATTVIEVGVDVPNASVMIVEHAERFGLSQLHQLRGRVGRGAARSHCLLIAHFK 807

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            +   +  RL  +  T+DGF +A  DL+ R  GE+LG +QSG   F IA     +++LE 
Sbjct: 808 RVGDEARERLQAMAETQDGFEVARVDLRIRGPGELLGTRQSGQKLFEIADLYRDEAILEE 867

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           AR+DA  ++  DP+L     ++    L   ++       + G
Sbjct: 868 AREDAFALVDADPELGRPEHRAAAEALEG-RWAGRLSLAQVG 908


>gi|197122525|ref|YP_002134476.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter sp. K]
 gi|196172374|gb|ACG73347.1| ATP-dependent DNA helicase RecG [Anaeromyxobacter sp. K]
          Length = 904

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 233/678 (34%), Positives = 355/678 (52%), Gaps = 12/678 (1%)

Query: 33  CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY-K 91
                       L   P ++ DR    +ISE+      T+ G +S     +++  +P  K
Sbjct: 229 LEERGRETVEAALELWPRAYQDRTALRRISELRVGDEATVLGTVSHVRIQRMRSGKPLLK 288

Query: 92  ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN-RIIMVHPHYIFHNSQD 150
           + + +G   + L+FF      LK  F  G  +  +GK+ +    R  M  P      + D
Sbjct: 289 VGVQEGGSALELVFFNPPPWRLKQ-FAAGESLLCSGKVTEGFGARRQMSQPEVEKVQAGD 347

Query: 151 -VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNI 208
             NF  I  VY  P        +K++   +  L P   + +  ++  ++     AEA   
Sbjct: 348 SANFGRIVPVYPGPADYQHPALRKLMKRLVDELVPAAVDDLPAEIRARRDLVGRAEALRE 407

Query: 209 IHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
            H P    D     E  +PA  RL ++EL   Q+AL L R+  + E GI  +       +
Sbjct: 408 AHFPPAGTDPLRAAERVTPAFRRLVFEELFFLQLALALRRRGVRAEAGIAFDASPAALAR 467

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
            +  +PF  T +QE A+ +I +DM+    M R+LQGDVGSGKT VA  AM  AV++G QA
Sbjct: 468 AVEPLPFRLTGAQERALAEIARDMADPEPMNRLLQGDVGSGKTAVAFAAMMLAVQSGWQA 527

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +M P  ILA+QH   + ++ +   + V ++  +     +R+A   +A G+A I +GTHA
Sbjct: 528 ALMVPTEILAEQHARTLSRWLEGRGVEVALVGASARGKGQREARAAVAEGRARIAVGTHA 587

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L + ++ + +L LV+VDEQHRFGV QR  L  K   P VL+MTATPIPRTL L   GD+D
Sbjct: 588 LLEQAVGFERLGLVVVDEQHRFGVMQRAGLISKGRRPDVLVMTATPIPRTLALAFYGDLD 647

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            SKI+E P GR P+ T +   ++        +  L  G++ Y + P +EE ++++     
Sbjct: 648 QSKISELPPGRTPVTTRLFGDSQRKAAYALARGELDAGRQVYVVYPLVEESEKTDLADAT 707

Query: 505 ERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
                L + F    I ++HGRM   +K+ VMD F+ G   +L+ATTVIEVG+DV +AS++
Sbjct: 708 TGAADLAKVFPGHEIGLLHGRMKPEEKQRVMDRFRAGEVHVLVATTVIEVGVDVPNASVM 767

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH-PPLSKNSYTRLSVLKNTEDGFLIAE 622
           I+E+AE FGL+QLHQLRGRVGRG   S C+LL H      ++  RL  ++ T+DGF IA 
Sbjct: 768 IVEHAERFGLSQLHQLRGRVGRGAAKSHCLLLAHFRRAGDDARERLRAMEETQDGFEIAR 827

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
            DL+ R  GE+LG +QSG     +A     +++LE AR++A  ++ +D DL      + R
Sbjct: 828 VDLRIRGPGELLGTRQSGQKLLDVADLYRDEAILEEAREEAFGLVERDGDLARPEHAAAR 887

Query: 683 ILLYLYQYNEAFQFIRAG 700
             L   ++       + G
Sbjct: 888 EALAG-RWAGRLSLAQVG 904


>gi|42528079|ref|NP_973177.1| ATP-dependent DNA helicase RecG [Treponema denticola ATCC 35405]
 gi|41819124|gb|AAS13096.1| ATP-dependent DNA helicase RecG [Treponema denticola ATCC 35405]
          Length = 678

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 222/688 (32%), Positives = 362/688 (52%), Gaps = 37/688 (5%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            ++ +  PL+   GVG      L ++            DLL   P  + DR     + + 
Sbjct: 2   LISEIQGPLTNIAGVGAAAVSQLKRL------GVENAGDLLRLFPRDWEDRSKINVLLDW 55

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKI 123
           ++ + + +   ++ H  F   K +  K+++ D  G   +L+ F R    L+  F  G + 
Sbjct: 56  NKFQKIHVEITVAGHEWFGFGKMKTLKLIVADKNGMTASLICFNR--PFLEKSFPVGARA 113

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL- 182
            V G   +    I      +     +++   ++  VY L +GL     +KII  AL    
Sbjct: 114 FVYGSFYRKYGEIQSSA--FDLEKPENMQSKIL-PVYPLTSGLGQAKLRKIIASALKMYA 170

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             +   + + +LQK   P   E   ++H P+   + E     R  L ++E    Q A+ +
Sbjct: 171 HGIDSELPESILQKYGLPPKQEVLFMLHTPKSMAEVE---KGRYALIFEEFFLFQYAIGM 227

Query: 243 M---RKQFKKEIGIPINVE---------GKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
               R+     +    N++           +   +L  + F  T+ Q S   +I +D+  
Sbjct: 228 RSIERRGRLPNLEDERNIDKTVKKEPVLRPLQSSLLERLNFKLTQDQLSVCAEINEDLDG 287

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            N M R++QGDVGSGKTLVA +A    +E GGQ   +AP  +LA+QH E   +  +   I
Sbjct: 288 PNPMARLMQGDVGSGKTLVAFLACLKVIEQGGQTAFLAPTELLARQHAENAARLLEPLGI 347

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            +  +TGN     R + L+ +  G   +IIGTH+LF   +QY  L L ++DEQHRFGV Q
Sbjct: 348 RLAFLTGNTKAKGRSRLLQELQKGNIDLIIGTHSLFSQGVQYKNLRLAVIDEQHRFGVLQ 407

Query: 411 RLKLTQK-------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           R  + QK         +PH+L+M+ATPIPRTL L+  GD+DIS I   P GRKPI T + 
Sbjct: 408 RSAIIQKGAESNEEKRSPHLLMMSATPIPRTLALSIFGDLDISTIKTMPPGRKPIITYVA 467

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIH 522
             ++ + V   +   + +G++AY++ P IEE ++ + +S    F  L   F + S+A+IH
Sbjct: 468 GEDKAERVYNFIGQEILQGRQAYFVYPLIEENEDLSLKSAERMFEELKTGFPNHSLALIH 527

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
            ++++ +++ +M+ F++G   +L+AT+V+EVG+DV +A+ ++IE+A+ FGL+ LHQLRGR
Sbjct: 528 SKVAEEEQKRIMEEFRSGKLNILVATSVVEVGVDVPNATCMVIEHADRFGLSALHQLRGR 587

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-M 641
           VGRG+  + C L+Y   ++++   RL+V+K T DGF+IAEEDL+ R  G+I G++QSG  
Sbjct: 588 VGRGDLQAYCFLIYGKKITEDGRARLTVMKETNDGFIIAEEDLRLRGPGDIGGVEQSGYH 647

Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQ 669
             F IA P     +L+ AR  A  +L Q
Sbjct: 648 LGFTIADPARDFKILQEARSAAFELLEQ 675


>gi|33597517|ref|NP_885160.1| ATP-dependent DNA helicase [Bordetella parapertussis 12822]
 gi|33573945|emb|CAE38263.1| ATP-dependent DNA helicase [Bordetella parapertussis]
          Length = 663

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 227/645 (35%), Positives = 346/645 (53%), Gaps = 19/645 (2%)

Query: 42  IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
            D + + P  + D      +S +       + G I + S    + RR    +L D +GE+
Sbjct: 5   EDFVLHLPLRYEDETRVTPVSSLRPGFAAQVEGEILR-SEVLYRPRRQLTAVLADDSGEL 63

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            L +        K     GR++   G+++       MVHP     ++       +  VY 
Sbjct: 64  QLRWLNFYPSQQKQ-LTVGRRLRARGEVRGGLFGREMVHP--RMSSADQPLPASLTPVYP 120

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD---- 217
              GL     +K I +AL+R   L + + ++  ++      A A  ++H P         
Sbjct: 121 STDGLPQPTLRKAIGQALARAD-LSDTLPEEARRRYGLAEFAPAVRLLHAPPPDAAEHEL 179

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV---EGKIAQKILRNIPFSPT 274
            E   PA  R+ +DELLA Q++L   R   + +   P+     E  +  ++   +PF+ T
Sbjct: 180 MERIHPAWRRIKFDELLAQQLSLAAARAARRVKRAEPLPASQDEDGLVARLYEALPFALT 239

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            +Q+  + +I  D++Q   M R+LQGDVGSGKT+VA IA A A+    Q  +MAP  ILA
Sbjct: 240 GAQQRVVAEIAADLAQPYPMHRLLQGDVGSGKTVVAAIAAAQAIACEAQVALMAPTEILA 299

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH+  +  + +   + V  ++G++    RR+A   +A G   +++GT AL QD + + +
Sbjct: 300 EQHFRKLVGWLEPLGVAVAWLSGSLSAKARREAAAAVADGSVQLVVGTQALIQDHVMFQR 359

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMTATPIPRTLVLTSLGDIDISKI 448
           L L IVDEQHRFGV QRL L++K         PH L M+ATPIPRTL +T   D+D+S I
Sbjct: 360 LGLSIVDEQHRFGVGQRLALSRKGETGRGVIVPHQLNMSATPIPRTLAMTFFADLDVSVI 419

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            E P GR P+ T ++   R +EVI  +     +G++AYW+CP +EE +    ++ V+   
Sbjct: 420 DELPPGRTPVVTKLVADARREEVIGHIAHAARQGRQAYWVCPLVEESEALELQTAVDTHE 479

Query: 509 SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           ++        I ++HGR+   +K  VM +F+ G   LL+ATTVIEVG+DV +AS+++IE+
Sbjct: 480 AMRAALPDLRIGLVHGRLPQAEKAEVMRAFREGEIDLLVATTVIEVGVDVPNASLMVIEH 539

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           AE FGLAQLHQLRGRVGRG   S C+LLY  PLS+ +  RL  +  T DGF IA  DL+Q
Sbjct: 540 AERFGLAQLHQLRGRVGRGTAESICVLLYQAPLSQVARQRLRAMFETSDGFEIARRDLEQ 599

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           R  GE LG +QSG+     A  E   ++ E AR+ A  +  + P+
Sbjct: 600 RGPGEFLGTRQSGLALLRFADLEADVAIAEQAREAAVWLRAKHPE 644


>gi|33601915|ref|NP_889475.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50]
 gi|33576352|emb|CAE33431.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50]
          Length = 663

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 228/645 (35%), Positives = 347/645 (53%), Gaps = 19/645 (2%)

Query: 42  IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
            D + + P  + D      +S +       + G I + S    + RR    +L D +GE+
Sbjct: 5   EDFVLHLPLRYEDETRVTPVSSLRPGFAAQVEGEILR-SEVLYRPRRQLTAVLADDSGEL 63

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYS 161
            L +        K     GR++   G+++       MVHP     ++       +  VY 
Sbjct: 64  QLRWLNFYPSQQKQ-LTVGRRLRARGEVRGGLFGREMVHP--RMSSADQPLPASLTPVYP 120

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD---- 217
              GL     +K I +AL+R   L + + ++  ++      A A  ++H P         
Sbjct: 121 STDGLPQPTLRKAIGQALARAD-LSDTLPEEARRRYGLAEFAPAVRLLHAPPPDAAEHEL 179

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV---EGKIAQKILRNIPFSPT 274
            E   PA  R+ +DELLA Q++L   R   + +   P+     E  +  ++   +PF+ T
Sbjct: 180 MERIHPAWRRIKFDELLAQQLSLAAARAARRVKRAEPLPASQDEDGLVARLYEALPFALT 239

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            +Q+  + +I  D++Q   M R+LQGDVGSGKT+VA IA A A+  G Q  +MAP  ILA
Sbjct: 240 GAQQRVVAEIAADLAQPYPMHRLLQGDVGSGKTVVAAIAAAQAIACGAQVALMAPTEILA 299

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH+  +  + +   + V  ++G++    RR+A   +A G   +++GT AL QD + + +
Sbjct: 300 EQHFRKLVGWLEPLGVAVAWLSGSLSAKARREAAAAVADGSVQLVVGTQALIQDHVMFQR 359

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATA------PHVLLMTATPIPRTLVLTSLGDIDISKI 448
           L L IVDEQHRFGV QRL L++K         PH L M+ATPIPRTL +T   D+D+S I
Sbjct: 360 LGLSIVDEQHRFGVGQRLALSRKGETGRGVIVPHQLNMSATPIPRTLAMTFFADLDVSVI 419

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            E P GR P+ T ++   R +EVI  +     +G++AYW+CP +EE +    ++ V+   
Sbjct: 420 DELPPGRTPVVTKLVADARREEVIGHIAHAARQGRQAYWVCPLVEESEALELQTAVDTHE 479

Query: 509 SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           ++        I ++HGR+   +K  VM +F+ G   LL+ATTVIEVG+DV +AS+++IE+
Sbjct: 480 AMRAALPDLRIGLVHGRLPQAEKAEVMRAFREGEIDLLVATTVIEVGVDVPNASLMVIEH 539

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           AE FGLAQLHQLRGRVGRG   S C+LLY  PLS+ +  RL  +  T DGF IA  DL+Q
Sbjct: 540 AERFGLAQLHQLRGRVGRGTAESICVLLYQAPLSQVARQRLRAMFETSDGFEIARRDLEQ 599

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           R  GE LG +QSG+     A  E   ++ E AR+ A  +  + P+
Sbjct: 600 RGPGEFLGTRQSGLALLRFADLEADVAIAEQAREAAVWLRAKHPE 644


>gi|320334950|ref|YP_004171661.1| ATP-dependent DNA helicase RecG [Deinococcus maricopensis DSM
           21211]
 gi|319756239|gb|ADV67996.1| ATP-dependent DNA helicase RecG [Deinococcus maricopensis DSM
           21211]
          Length = 779

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 221/683 (32%), Positives = 361/683 (52%), Gaps = 24/683 (3%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           G K                    DLL  +P    DR   P + ++ + + VT++G +   
Sbjct: 115 GPKK---------LRGLGLHTLRDLLHAYPRRHEDRRALPNLVDVEDGQKVTVSGVVVSK 165

Query: 80  SSFQLQKRR-PYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
           +    + +    ++ L D  G+ +   +F +     +     G ++ VTG+ K+    + 
Sbjct: 166 NRRTPKPKMLILEVTLEDPYGQRVKCTWFNQ--PWAEKQLSVGSRLIVTGRAKRFGRSVQ 223

Query: 138 MVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ 195
           +   ++   +  + +     I  VY    G+S D  +K    AL+ +P L +++     +
Sbjct: 224 IGAEYFEREDDAEGSLSTARIVGVYEAQEGVSQDFLRKAAHTALTSVP-LDDYLPGAWRR 282

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255
           +     +A+A   +H P    D +  + ARERL +DE L  ++ LLL   +    +G   
Sbjct: 283 QYGLTDLADALWGMHFPT---DEDHLTRARERLRFDEYLFLELRLLLQ-GEDGVLLGKRF 338

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
             +G+  ++   ++PF  T +Q   + ++  DM  + +M R++QGDVGSGKT VA  A+ 
Sbjct: 339 LADGRDIERFEGSLPFQFTGAQRRVLHEVADDMRSEKQMARLVQGDVGSGKTAVAACALY 398

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
            AV  G Q  +MAP  ILA+QH++ +  Y +   + V ++ G M    + +    IA+G 
Sbjct: 399 LAVRDGYQGALMAPTEILARQHFKNLAGYLEPLGVRVGLLIGAMTPKQKAEMQATIANGL 458

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             +++GT AL Q+S+++  L L ++DE+HRFGV QR KL      P VL+M+ATPIPR+L
Sbjct: 459 IDVVVGTQALIQESVRWANLGLAVIDEEHRFGVLQRRKLLADR--PDVLVMSATPIPRSL 516

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            LT+ GD+++S I E P GR PI+T +I      +    +   + EG++AY +   IEE 
Sbjct: 517 ALTAYGDLELSVIDELPPGRTPIETKLIQDTHRRQAYGFVMRQIREGRQAYVVTSLIEEN 576

Query: 496 KESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           +     +  +  + L      + I ++HG+MS  +K+ VMD F+     +L++TTVIEVG
Sbjct: 577 ENLELLAATQLADDLKVILPDARIDLLHGKMSAAEKDEVMDRFRRREFDVLVSTTVIEVG 636

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +A++++IENAE FGL+QLHQLRGRVGRG   S C+L+     S+ +  RL +++ +
Sbjct: 637 VDVPNATVMVIENAERFGLSQLHQLRGRVGRGSAQSYCVLIAG-EHSQKTRKRLKIIEGS 695

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            DGF+IAE DLK R  GEI G +QSG+P   +        ++E AR  AKHIL  DP L 
Sbjct: 696 TDGFVIAEADLKLRGPGEIRGTRQSGLPDLQLGDIVNDVDVIEDARALAKHILAHDPKLE 755

Query: 675 SVRGQSIRILLYLYQYNEAFQFI 697
             R   +R  L     + A + +
Sbjct: 756 HPRLTYLRQELQARSAHVAIREV 778


>gi|187778910|ref|ZP_02995383.1| hypothetical protein CLOSPO_02505 [Clostridium sporogenes ATCC
           15579]
 gi|187772535|gb|EDU36337.1| hypothetical protein CLOSPO_02505 [Clostridium sporogenes ATCC
           15579]
          Length = 679

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 230/681 (33%), Positives = 376/681 (55%), Gaps = 24/681 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFI--DRHYRPKISEISEE 67
           ++P++T +GVG K    L K            +DLL Y P  +   D + + K+S     
Sbjct: 4   YSPITTLKGVGPKTKEQLEK------CMIFNIMDLLLYFPRDYEFIDNYSKDKLS----N 53

Query: 68  RIVTITGYISQH-SSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           + V I   +       + +  +    I+ NDG   I   +F +    +KN F  G +  +
Sbjct: 54  KKVIIKVQVENIKRDVRTRTGKILTTIIFNDGEKAIVGSWFNQ--PYIKNYFKIGEEYIL 111

Query: 126 TGKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
            G +++ +  + + +   + +  ++ V    I   Y L   L  +L  K++  AL  +  
Sbjct: 112 QGSLREYRGTLTINNAQILKNKYAEKVEERKIIPKYPLKGDLKNNLLIKLVNSALGNI-A 170

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E + + L++K  F S+ ++   IH P   K+ E +     RL + ELLA  + +  ++
Sbjct: 171 IGENLPRWLIEKYKFISLDKSIRTIHKPENQKELEESI---RRLKFQELLAYCLKIASLK 227

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +  K           +    I+R++PF  T +Q   +++I +D  ++  M R+LQGDVGS
Sbjct: 228 EYLKTATEGIAFKVLEETSDIIRSLPFKLTNAQNRVLEEIFKDQKKEKPMNRLLQGDVGS 287

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++ALI +   ++ G Q V++AP  ILA QHYE   K  ++  + + ++ G++  + +
Sbjct: 288 GKTIIALICLFNVIKNGYQGVMLAPTEILAIQHYEEALKLFKDFNLNIALLVGSVKASLK 347

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           ++  E++  G+  +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+  K  +   L
Sbjct: 348 KEIKEKLKKGEIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKMLNKGRSIDTL 407

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPRTL L+  GD+D+S I E P GRK I T  +  +    V       +++G++
Sbjct: 408 VMSATPIPRTLTLSLYGDLDLSIIDELPPGRKKIDTYYVNDSYRKRVYNFALKEINDGRQ 467

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP +EEK+E N  SV + +N L E +   +  AI+HG+M   +K+++M  FK G  
Sbjct: 468 VYIVCPLVEEKEELNLNSVEKLYNDLKEDYFKEVEIAILHGKMKGKEKDAIMKEFKEGKI 527

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K LI+TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG+  S CIL+       
Sbjct: 528 KALISTTVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGKYKSYCILIAKVKNDI 587

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++K++ DGF +AEEDLK R  GEI G +Q G    L+A       LL+IA  +
Sbjct: 588 I-RKRMEIMKSSNDGFFVAEEDLKLRGGGEIFGFRQHGSSNLLLADVIEDIHLLKIANVE 646

Query: 663 AKHILTQDPDLTSVRGQSIRI 683
           +K I+  + +  +   + ++ 
Sbjct: 647 SKKIIDSNSEEDNKIKEEVKT 667


>gi|260663566|ref|ZP_05864456.1| ATP-dependent DNA helicase RecG [Lactobacillus fermentum 28-3-CHN]
 gi|260552107|gb|EEX25160.1| ATP-dependent DNA helicase RecG [Lactobacillus fermentum 28-3-CHN]
          Length = 678

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 228/696 (32%), Positives = 364/696 (52%), Gaps = 24/696 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   +   +GVG K    L+ +            DLL ++PS + D      ++   
Sbjct: 1   MRSLQDSVGQLKGVGPKTVENLATL------GIKTVGDLLTHYPSRYDDF-APTDLTVAK 53

Query: 66  EERIVTITGYISQH---SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           +++ VT+ G +      S +  ++ R    L+    G + +++F +    LK        
Sbjct: 54  DKQKVTVKGTVVSEPLMSRYGYRRSRMSFRLVVGQAGVVNVVYFNQ--PYLKQQVEPNHD 111

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           +TV G     + +I+      +  +S+        A Y     +     +K+I +A  + 
Sbjct: 112 VTVLGTWDAPRQQILGTK--LVVADSKAEAVG---ATYPANKHVRQTTLRKLIRQAFDQY 166

Query: 183 P-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
             V+   +   L Q+       E    +H P      E     +   A++E    ++ L 
Sbjct: 167 QNVIATLLPISLRQRYQLMERREMIKQMHFPTDTTMAEAA---KRTAAFEEFFLFELRLQ 223

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R+  +KE G+ I       +  ++ IPF  T +Q+  + +I +D+    +M R+LQGD
Sbjct: 224 AIRRANRKEEGLQILYNNAELRDFIKTIPFELTAAQKRVVNEICRDLRAPYQMNRLLQGD 283

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA IA+ AAV AG Q  +MAP  ILA QH E + K    T + V ++TG +  
Sbjct: 284 VGSGKTIVAAIAVMAAVLAGYQVALMAPTEILAAQHAEKLAKVFSGTHVEVALLTGALTA 343

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
               +  + I  G  ++I+GTHAL Q+ + Y  L LVI+DEQHRFGV QR +L +K   P
Sbjct: 344 KQHDQLAKAIKAGDVNLIVGTHALIQNGVDYANLGLVIIDEQHRFGVNQRQQLREKGEHP 403

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL +T+ G++D+S I E PAGR+PIKT  +  N+    ++ L   L  
Sbjct: 404 DVLAMTATPIPRTLAITAYGEMDVSVIDELPAGRQPIKTTWLKGNQGQSALDFLDQQLRA 463

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
           G +AY + P IEE +  + ++  + +    EHF  T  + ++HGRM++ +K  VM  F+ 
Sbjct: 464 GAQAYVVSPLIEESENLDVKNATDLYARFKEHFGPTYQVGLLHGRMNNDEKAVVMKDFQA 523

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++++ATTVIEVG+D  +A++++I +A+ FGLAQLHQLRGRVGRG+  S C+L+  P 
Sbjct: 524 GKVQVMVATTVIEVGVDNPNATVMLIYDADRFGLAQLHQLRGRVGRGKRQSYCLLVADPK 583

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +     R+  +  T DGF +A++DL+ R  G++LG +QSGMP F +  P     +L+IA
Sbjct: 584 -TDEGKARMETMVATTDGFEVAQKDLELRGAGDVLGDRQSGMPDFKVGDPVGDLKMLQIA 642

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           R DA ++L           Q + + L  +Q    F 
Sbjct: 643 RADAGNLLATPGWDQKDENQPLVLYLQRHQLETHFD 678


>gi|303258026|ref|ZP_07344035.1| ATP-dependent DNA helicase RecG [Burkholderiales bacterium 1_1_47]
 gi|330999442|ref|ZP_08323156.1| ATP-dependent DNA helicase RecG [Parasutterella excrementihominis
           YIT 11859]
 gi|302859369|gb|EFL82451.1| ATP-dependent DNA helicase RecG [Burkholderiales bacterium 1_1_47]
 gi|329574868|gb|EGG56427.1| ATP-dependent DNA helicase RecG [Parasutterella excrementihominis
           YIT 11859]
          Length = 685

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 231/687 (33%), Positives = 364/687 (52%), Gaps = 25/687 (3%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           G+K +    ++            D + + P  + D      I E+       + G ++ +
Sbjct: 11  GQKLAPLAERLKKL---GLVSDWDFVLHLPLRYEDETSITPIEELEVGVDAQVEGVVTNN 67

Query: 80  SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK-LKNRIIM 138
           S  +      ++  ++D T  + + F +     ++++   G+++ + G  +      + M
Sbjct: 68  SDNRFGN---FEAWVDDETDMLKVRFIHYYPS-IRDLLKVGKRVRLYGNPRAAFGGGLEM 123

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           +HP      S+      +  VY    G++    +K I  AL  +  + + + ++   +  
Sbjct: 124 IHPKVRAPKSESDLPKTLSPVYPAGEGVTQLWLRKRIDRALMDVD-ISDLLTEEERNELH 182

Query: 199 FPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            P ++EA N +H+P+           T PA +RL +DELLA QI+L   R+      G  
Sbjct: 183 LPGLSEAINSLHHPKAGAPIGPLQNRTDPAWQRLKFDELLAQQISLKKSREMRDMNKGPL 242

Query: 255 INV----EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
           + +       +  K   ++PF  TK+Q    KDI + +  +  M R++QGDVGSGKT+VA
Sbjct: 243 MPLRKGDNNSLTAKFFHSLPFKLTKAQIRVWKDIYESLGSERPMNRLVQGDVGSGKTVVA 302

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +A   A++AG QA +MAP  ILA+QH++ I  + +   + V  ++G      +R+AL  
Sbjct: 303 ALAACQAIDAGYQAALMAPTEILAEQHFKKIISWLEPFGVRVVWLSGKQKAKEKREALAA 362

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTA 428
           I  G A +++GTHA+ Q  +++  L L IVDEQHRFGV QRL +   Q    PH+L+++A
Sbjct: 363 IEDG-AELVVGTHAIIQPDVKFKALGLAIVDEQHRFGVDQRLAIRAQQNGMMPHLLMLSA 421

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL ++ L DID+S I E P GR+ I T ++ ++R  +++E +   L+ G +AYW+
Sbjct: 422 TPIPRTLAMSYLADIDVSVIDELPPGRQEISTKLVSMSRKGDLVEWIGKSLAAGLQAYWV 481

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           CP IEE ++ +  +  E    + +      I ++HG+M+  DK +VMD F  G  KLL++
Sbjct: 482 CPLIEESEKVDLTAATETCEEIKQILPQFKIELLHGKMTPEDKNAVMDRFVKGETKLLVS 541

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG+DV +ASI++IE+AE FGLAQLHQLRGRVGRG   S C  ++   LSK    R
Sbjct: 542 TTVIEVGVDVPNASIMVIEHAERFGLAQLHQLRGRVGRGSIKSYCFAIFGDQLSKIGKER 601

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA-KHI 666
           L V  +T DGF I+  DL+ R  GE LG +QSG      A  E    L+E A   A K I
Sbjct: 602 LQVFNDTTDGFEISRRDLELRGPGEFLGARQSGAALLRFADFETDGFLVEKAMAMADKWI 661

Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEA 693
             +DP        + R      +Y EA
Sbjct: 662 REKDPRAEKH---AARWYQSKEKYLEA 685


>gi|319944239|ref|ZP_08018515.1| DNA helicase RecG [Lautropia mirabilis ATCC 51599]
 gi|319742534|gb|EFV94945.1| DNA helicase RecG [Lautropia mirabilis ATCC 51599]
          Length = 769

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 238/743 (32%), Positives = 373/743 (50%), Gaps = 87/743 (11%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L+++            DL+ + P  + D      I  +       I   +++     
Sbjct: 41  ASLLARL------GLHGPDDLVLHLPLRYEDETRLVPIGSLVHGSSAQIQATVTRAEV-- 92

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + RR  ++ +NDGTGE+ L F +     L      GR +   G+++       MVHP Y
Sbjct: 93  TRGRRALQVWVNDGTGELQLRFLHFYPSQL-TQLQPGRLVRAYGELRVGLFGREMVHPRY 151

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK------ 197
              +        +  VY    GL     ++ I  AL+      + +   LL         
Sbjct: 152 RMVSEDTPLPDRLTPVYPTVAGLGQATLRREIDRALADCR-WQDTLPPTLLTALMSGSGD 210

Query: 198 ------------------SFPSIAEAFNIIHNPRKAKDFEWTSPAR----ERLAYDELLA 235
                               P + E+  +IH+P    D +     R    +R+  +EL+A
Sbjct: 211 GKQASGRPGADPVASLLAGLPPLLESLRLIHHPPPGTDLDALLERRTPACQRIVLEELVA 270

Query: 236 GQIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
            Q++L   R+    + G P+ N +G+ A  +L ++PF+ T +Q     +I  D++++  M
Sbjct: 271 QQLSLRRARQLRAGQRGQPLANRDGEAA--LLASLPFALTGAQRRVCDEIAADLARQQPM 328

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+LQGDVGSGKT++A +A   AV +G QA +MAP  ILA+QHYE +  + +   + V  
Sbjct: 329 NRLLQGDVGSGKTVIAALAAMVAVGSGWQATLMAPTEILARQHYERLSPWLEPLGVRVGW 388

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           + G++  A +R+  + +A G+  ++IGTHAL +DS+ + +L L IVDEQHRFGV QRL L
Sbjct: 389 LAGSLGAAAKRRVKQAVAAGEVDVLIGTHALIEDSVVFPRLALAIVDEQHRFGVAQRLAL 448

Query: 415 TQKATA-------------------------------------------PHVLLMTATPI 431
             + T                                            PH L+MTATPI
Sbjct: 449 RGEGTRDAGTAAEEPERAGATQDTAQAAAGQDGRVRSAAEGHAGEDGFLPHQLMMTATPI 508

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL +T   D+D+S I E P GR+P+ T +I  +R D+V+E +   ++EG++AYW+CP 
Sbjct: 509 PRTLAMTFYADLDVSVIDELPPGRQPVTTKLIADSRRDQVVENVGRWVAEGRQAYWVCPL 568

Query: 492 IEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +EE +  + ++ ++    L          ++HGR+S  +K+ VM +FK G   LL+ATTV
Sbjct: 569 VEESEALDLQNAIDTREQLQAALPQVRTGLVHGRLSAAEKDEVMAAFKAGELDLLVATTV 628

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           IEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S C+LLY  P    +  RL+ 
Sbjct: 629 IEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGTAQSLCVLLYRHPPGAIARERLAT 688

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           ++ T+DGF IA  DL+ R  GE+LG +QSG      A       L++IA   ++ +L   
Sbjct: 689 MRETQDGFEIARRDLELRGPGELLGARQSGAMLLRFADLGRDAPLVDIAHALSERLLEAR 748

Query: 671 PDLTSVRGQSIRILLYLYQYNEA 693
           PD+  V     R L    ++ +A
Sbjct: 749 PDV--VEAHLDRWLRRRERFLDA 769


>gi|260495036|ref|ZP_05815165.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_33]
 gi|260197479|gb|EEW94997.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_33]
          Length = 689

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 224/650 (34%), Positives = 358/650 (55%), Gaps = 14/650 (2%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ-K 86
            ++ N  +       DL++Y P ++ DR    KI E+     V +   +    +  ++  
Sbjct: 23  KQLSNLKSLGINTIYDLIYYFPRAYDDRTNIKKIGELKFNEYVVLKATVMSAVNLTVRSG 82

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IF 145
           ++  K ++ DGTG + +L+F      +K     G +    G+ KK      +++P Y +F
Sbjct: 83  KKIVKAMVTDGTGIMEILWF--GMPYIKKSLKIGEEYLFIGQTKKS-TVFQLINPEYKLF 139

Query: 146 HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAE 204
              Q V+   I  +YS    ++ +  +K++ + L + L    E I  +L+++        
Sbjct: 140 SGQQKVSENEILPIYSSNKNITQNSLRKLVEKFLVNFLNYFEENIPDELIKEYKIMERKS 199

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK--QFKKEIGIPINVEGKIA 262
           A   IH P   K+ E     + R A +ELL  ++ +L  R   +        +  + +  
Sbjct: 200 AIKNIHYPVSMKEIEEA---KRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKV 256

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +K L  +PF+ T +Q+  IK+I  ++S    + R++QGDVGSGKT+VA++ +    E G 
Sbjct: 257 KKFLSFLPFTLTNAQKKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGY 316

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  +MAP  ILA QHY  IK+  +   + VE++T ++    + + LE IA+G   I+IGT
Sbjct: 317 QGALMAPTEILANQHYLGIKERLEKIGLRVELLTSSIKGKKKNEILEGIANGDVDIVIGT 376

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H+L +D + + KL L+++DEQHRFGV QR KL +K    ++L+M+ATPIPR+L L+  GD
Sbjct: 377 HSLIEDDVIFKKLGLIVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGD 436

Query: 443 IDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           +D+S I E P GR PIKT  I  +  ++++ + +   ++ G +AY++ P IE   +   +
Sbjct: 437 LDLSIIDELPPGRTPIKTKWIANDEDLEKMYDFIYKKVNAGNQAYFVAPLIETSDKMALK 496

Query: 502 SVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           SV +    +   F    I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  +
Sbjct: 497 SVDKVSEEIERKFSNKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPAS 556

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           +I+ I NAE FGL+ LHQLRGRVGRG + S C L+ +  +++NS  RLS+++ TEDGF I
Sbjct: 557 TIMTIYNAERFGLSALHQLRGRVGRGSKQSYCFLISN-SITENSKQRLSIMEETEDGFRI 615

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           AEEDLK R  GEI G++QSG               +++ R +    L + 
Sbjct: 616 AEEDLKLRNSGEIFGLRQSGFSDLKFIDIIYDVKTIKLVRDECIKYLKEH 665


>gi|88607241|ref|YP_505812.1| ATP-dependent DNA helicase RecG [Anaplasma phagocytophilum HZ]
 gi|88598304|gb|ABD43774.1| ATP-dependent DNA helicase RecG [Anaplasma phagocytophilum HZ]
          Length = 702

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 257/670 (38%), Positives = 397/670 (59%), Gaps = 24/670 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH--YRPKISEISE 66
           +F+ +   +GV  +  L L K+        +R +DLL Y P S++DR       +S    
Sbjct: 27  MFSSIYDIQGVDNEKGLLLEKL-----CGGSRIVDLLLYAPYSYVDRRNSQLTPLS--RR 79

Query: 67  ERIVTITGYISQHSSFQLQKRR----PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
             +VT  G +++      ++R+    PYK+ L    G+I L+FF      L++V   G++
Sbjct: 80  GSVVTFLG-VAKKHVPPYKRRKSSKSPYKVQLGTEIGDIWLIFFNYSQPYLESVLEVGKQ 138

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
             V+GK++     + + HP Y  +N  +      +E VYS+  GL   +  K+I  AL  
Sbjct: 139 CLVSGKLEIHCGEMQITHPDYCTNNLKKFTEICALEPVYSVTKGLHSRVIHKLIKVALKS 198

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +    EW+  DL+++ S+ S  E+   +H P      E     + RLAYDEL+A   A+ 
Sbjct: 199 IQAQHEWLPADLIEENSWLSWQESVYKMHTPEN---VEEVRRIKGRLAYDELMAYHAAVY 255

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
             R+  ++  G+ + V+G   Q++L+ + F  T  Q+SAI++I +  +   +M ++LQGD
Sbjct: 256 FARQHGRR-KGVALEVKGTNYQEVLKRLGFELTAGQKSAIREITRAQTSDQQMAKLLQGD 314

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VAL AM   VE+ GQ  +M P  +LA+QH  +IKK  +   I +E++TG    
Sbjct: 315 VGSGKTVVALFAMLNTVESSGQVAVMVPTEMLAEQHCSWIKKLLEGMDICIELLTGKTKN 374

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
                   R+  G+ HI+IGTHALFQ+S++++ L LV++DEQ RFGV QR+KL +K  + 
Sbjct: 375 K--NTIHARLLSGEIHILIGTHALFQESVKFHNLRLVVIDEQQRFGVLQRMKLIEKGDSA 432

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L +TATPIPRTL     G++D   + +KPA R P+KT I+ +  ID++ +RLK ++S 
Sbjct: 433 DILFITATPIPRTLEQILYGNMDRITLKDKPACRLPVKTSIVKVCMIDDLCKRLKNMISR 492

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNG 540
             K YWICP IE  ++++  SV ERF  L   F ++ + + HG M+ I  ES + +F  G
Sbjct: 493 EHKIYWICPYIEGSEDNDVASVEERFEFLKNMFGNNIVGVSHGAMTQIGNESALQAFYAG 552

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+AT++IEVGI+V DA+II+IEN E FGL+QLHQLRGRVGRG + S CILL H P+
Sbjct: 553 NIKVLVATSIIEVGINVPDATIIVIENPERFGLSQLHQLRGRVGRGHQQSYCILL-HGPV 611

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           SK +Y +LSVL+++ DGF IAE+DL  R  G++LG +QSG+  F  A  +   ++++ A 
Sbjct: 612 SKIAYRKLSVLRDSHDGFHIAEQDLILRGGGDMLGCRQSGIAAFKFADAQDFHAMVK-AH 670

Query: 661 KDAKHILTQD 670
                I+  +
Sbjct: 671 AAVSDIVKNE 680


>gi|87124312|ref|ZP_01080161.1| putative DNA helicase [Synechococcus sp. RS9917]
 gi|86167884|gb|EAQ69142.1| putative DNA helicase [Synechococcus sp. RS9917]
          Length = 856

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 236/706 (33%), Positives = 372/706 (52%), Gaps = 33/706 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL   +GVG K +  L+ +      +         Y+P  ++D     +I  +    
Sbjct: 157 LDTPLGKVKGVGPKLAERLAALGLLLVRDLLL------YYPRDYVDYSALRRIEALQAGE 210

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVF 117
             TI   + +   F   +     IL   L D TG + +  F                  +
Sbjct: 211 TATIVASVRRCHGFTSPRNPNLSILELQLQDPTGRLKVTRFLAGRRFSSPAALHSQTRQY 270

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-----NFPLIEAVYSLPTGLSVDLFK 172
             G  + V+G +K     +    P      S            +  VY L  GL+ D  +
Sbjct: 271 PAGATVAVSGLVKAGPYGLSFQDPLIEVMESAQAPLRSRQIGRLLPVYPLTEGLTADRLR 330

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           + +   L    + PE +     Q+    + ++A   IH P      +     R RL +DE
Sbjct: 331 RTVDAVLPLGRLWPEPLTVQQRQRLGLLTRSQALQAIHQPPDRDSLQQA---RRRLVFDE 387

Query: 233 LLAGQIALLLMR---KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
            L  Q+ L+L R   +Q +      +     +  + L  +PF  T +QE  + +I  D++
Sbjct: 388 FLLLQLGLMLRRAALRQRQAPALRALGARDGLVGRFLDELPFRFTAAQERVLAEIELDLA 447

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           +   M R++QGDVGSGKT+VA+ A+  AVEAG Q   MAP  +LA+QHY  + ++     
Sbjct: 448 RPEPMARLVQGDVGSGKTVVAIAALLKAVEAGWQGAFMAPTEVLAEQHYRSLCRWLIPLN 507

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + VE++TG  P+  RR+ L  +A+GQ ++++GTHAL +D + + +L LV+VDEQHRFGV+
Sbjct: 508 VSVELLTGATPRPVRRRLLTDLANGQLNVLVGTHALIEDPVDFSRLGLVVVDEQHRFGVK 567

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PIKT ++  +  D
Sbjct: 568 QRNRLLGKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIKTRLLTASARD 627

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSD 527
           E    ++  ++ G++AY + P +E+ ++ + RS VE    L +       + ++HGR+S 
Sbjct: 628 EAYALIREEVARGQRAYVVLPLVEDSEKLDLRSAVEVHRQLCDEVFPEFEVGLLHGRLSS 687

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K++V+ +F  G  ++L++TTV+EVG+DV +AS+++I++A+ FGLAQLHQLRGRVGRG 
Sbjct: 688 AEKQAVIHAFAEGRAQVLVSTTVVEVGVDVPEASVMVIDHADRFGLAQLHQLRGRVGRGA 747

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C LL +   +  +  RL VL  + DGF IAE DL+ R  G++LG +QSG+P   +A
Sbjct: 748 AASHC-LLINDSRNVLAKQRLEVLVRSNDGFEIAEMDLRLRGPGQVLGTRQSGLPDLALA 806

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
                 S+LE AR++A  +++ DP L +     +R LL       A
Sbjct: 807 SLADDGSVLEEAREEAAALISADPSLQNQP--ILRQLLADQLQRTA 850


>gi|118594142|ref|ZP_01551489.1| ATP-dependent DNA helicase [Methylophilales bacterium HTCC2181]
 gi|118439920|gb|EAV46547.1| ATP-dependent DNA helicase [Methylophilales bacterium HTCC2181]
          Length = 677

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 228/623 (36%), Positives = 351/623 (56%), Gaps = 11/623 (1%)

Query: 54  DRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEML 113
           D+     I +IS      I G ++   +   Q R+   +++ D TG + L F    +   
Sbjct: 35  DKTQIDLIQDISPGGSYQIQGKVTYVKT-AYQPRKNLTVVIEDATGSLQLRFLNFYSSQS 93

Query: 114 KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK 173
           +  F EG  +   G++        M+HP Y    +       +  +Y+L  GL       
Sbjct: 94  RQ-FSEGVIVRAYGEVNPKSLIKEMIHPDYEIIVTDKPLPKCLTPIYALTRGLGQKSILN 152

Query: 174 IIVEALSRLPVLPEWIE--KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
            + +   ++      ++   +L  K++ P + ++   +H P   K  +   P R++L YD
Sbjct: 153 FVKKTFDQIAKKDTLLDHFPELNIKRNLPDLTKSLRELHMPSSTKPED-IDPYRKKLIYD 211

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           ELLA Q+    +  Q K  I   I  +  +    + ++ F+ T  QE+   +I+ D+   
Sbjct: 212 ELLAHQLFFRGLYHQQKNYIAKKIIFDRSLHDAFVSSLEFTLTGQQENCFNEIMSDLGCS 271

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R+LQGDVGSGKT+VA +A   A++ GGQ   MAP  ILA+QHY  ++ +     I 
Sbjct: 272 FPMNRLLQGDVGSGKTVVATMAALQAIKNGGQVGFMAPTEILAEQHYIKLRDWLNPLNIS 331

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE ++G++    ++   ER+  G+  +++GTHAL QD +++  L L I+DEQHRFGV+QR
Sbjct: 332 VEFLSGSISAPEKKIIYERLVEGRIDLLVGTHALIQDKVRFKSLALYIIDEQHRFGVEQR 391

Query: 412 LKLTQK-----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           L++            H L+M+ATPIPRTL ++   D+DIS I E P GR+PIKT +I  +
Sbjct: 392 LQIRSNNKTRAHEEAHQLMMSATPIPRTLSMSYFADMDISTINELPPGRQPIKTKLISDS 451

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRM 525
           R ++++  ++   +EG + YW+CP IEE +     +V   F  L   F S  IA+IHG+M
Sbjct: 452 RRNDLLTIIQKHCNEGNQVYWVCPLIEESEVLQLETVENTFQQLSSFFKSQTIALIHGKM 511

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +KE++M +FK G  ++L+ATTVIEVG+DV +A+++IIENAE  GL+QLHQLRGRVGR
Sbjct: 512 KQSEKETIMQTFKAGHTQILVATTVIEVGVDVPNATMMIIENAERMGLSQLHQLRGRVGR 571

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
           G + S+CIL Y   L+  +  RL ++    DGF I+EEDLK R  GE LG+KQSG+P   
Sbjct: 572 GSKQSTCILFYGKKLTDTAKDRLRIIYENTDGFKISEEDLKLRGPGEFLGLKQSGLPSLK 631

Query: 646 IAQPELHDSLLEIARKDAKHILT 668
           IA     D LL +A+ DA+++LT
Sbjct: 632 IANINKDDDLLALAKSDAEYLLT 654


>gi|91763276|ref|ZP_01265240.1| ATP-dependent DNA helicase recG [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717689|gb|EAS84340.1| ATP-dependent DNA helicase recG [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 683

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 254/688 (36%), Positives = 407/688 (59%), Gaps = 18/688 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L A L+   GVGKK    L K             DLL+  P S+ DR    K+ ++    
Sbjct: 10  LLADLTKLNGVGKKTMEILKK------KKVNNIFDLLWRLPKSYTDRTLVSKVCDLQIGV 63

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I TI   +     F   +  P ++   D TG+I  +FF      ++ +     ++T++GK
Sbjct: 64  IQTIR-IVPLKYQFPRVRNLPNRVNCIDETGKIDCIFFNSHEGYVRKILPLNEEVTISGK 122

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           I   K R  + +P YI  +S  +    I+  Y+L  G++   + KII + L  LP+LPEW
Sbjct: 123 IGNYKGRYQITNPTYISQDSSLIEN--IDNKYTLTEGITEKTYNKIINQILKNLPILPEW 180

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
            +KD+L+  +  S  E+   +H+P+  +++   S   +RLAYDE+LA  +    +RK+ K
Sbjct: 181 HDKDILKIFNNESWNESIIKLHDPKNIENY--KSDFYKRLAYDEILASFLVNSEIRKKIK 238

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           K   I  N   K  + I+  + F+ T  Q+ ++ DI +D++ K++M R+LQGDVGSGKT+
Sbjct: 239 KIKKISKNFSEKAHKNIVNKLNFTLTNDQKISLGDINKDLNSKSKMFRLLQGDVGSGKTI 298

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VALI+    + +G Q  +MAP  ILA+QHY  + K      I +E+++     + +++ +
Sbjct: 299 VALISSLNVINSGFQVALMAPTEILARQHY-TLAKKLFPKDIKIELLSSKSENSEKKRII 357

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427
           +++ + +  ++ GTHA+FQ  I +  L  +I+DEQH+FGV+QR  L  +      VLLM+
Sbjct: 358 KKLENNEIQMVFGTHAIFQKKIIFANLGYIIIDEQHKFGVRQRKLLSDKGGDNCDVLLMS 417

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL ++  GD+D+S I EKP+ RK +KT     ++ID+VI  +K  ++EG + +W
Sbjct: 418 ATPIPRTLTMSVYGDMDVSIIKEKPSNRKEVKTYSKLESKIDDVINFVKKEINEGNQIFW 477

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +CP IEE K+ + +S V ++  L+E F + +A++HG++ + +KE +++ F N    +L++
Sbjct: 478 VCPLIEESKKLDHQSSVTKYKFLNEIFPNKVALLHGKIENEEKEEILNKFLNKKYSILVS 537

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TT+IEVGID  +A++IIIENA  FGL+QLHQLRGRVGRG + +SCIL++   LS N+  R
Sbjct: 538 TTIIEVGIDFPNANVIIIENANKFGLSQLHQLRGRVGRGTKQASCILMFKSNLSVNAKKR 597

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           +++LKN+ DGF I+EED+K R  G++LG KQSG+  F +A P  ++ L  +A K  K I 
Sbjct: 598 INILKNSNDGFEISEEDMKLRGFGDLLGFKQSGIKNFRLADPIQNEDLFLMAEKQIKRI- 656

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
               +L +   +  + LL LY   +   
Sbjct: 657 ----ELENTDIKKYKALLKLYDQADIIN 680


>gi|302670822|ref|YP_003830782.1| ATP-dependent DNA helicase RecG1 [Butyrivibrio proteoclasticus
           B316]
 gi|302395295|gb|ADL34200.1| ATP-dependent DNA helicase RecG1 [Butyrivibrio proteoclasticus
           B316]
          Length = 689

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 230/683 (33%), Positives = 357/683 (52%), Gaps = 20/683 (2%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L   +   +G+G+K +    K             DLL Y+P  +       + S++  
Sbjct: 4   RELDENVINLKGIGEKTAKLFEK------CGVRTVGDLLSYYPRCYDGYEIPVRASDVRP 57

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLN--DGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            +I ++   I   S  + + R    I     D TG+I + +F      L +    G    
Sbjct: 58  GQINSVKLTIIG-SIIKRRVRNLSIIAFEAADQTGKIKMTYFN--APYLASSLKSGTTHI 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
             G ++K  +   M  P              +   Y L  GL+ ++  K + +A   +  
Sbjct: 115 FRGMVQKKGSFYTMDQPKMYSQEEYASLVGRLMPRYPLVKGLTNNIVIKAVEQAFLNIGK 174

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E++ + +L + S    +EA   IH P   K  E     R RLAYDE L   + L L++
Sbjct: 175 LEEFVPQTILDRLSLIGYSEAARSIHFPENDKKLEEA---RRRLAYDEFLLFVLKLRLLK 231

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              ++       VE    +++L  +P+  T +Q  A KDI  D+   + M R++QGDVGS
Sbjct: 232 MTQEEISNSFPMVEVSETKRLLEVLPYKLTNAQSLAWKDIQNDLQGPSVMNRLIQGDVGS 291

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI---IVEIITGNMPQ 361
           GKT++A++A+      G Q  +MAP  +LA QH+E  K+      I      ++TG +  
Sbjct: 292 GKTVIAMLALLTTAANGYQGALMAPTEVLAAQHFENFKELIDKYNIQHLKPILLTGALSA 351

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             +++A   I+ G+A+ IIGT+AL Q+ + Y  L LV+ DEQHRFGV+QR  L  K    
Sbjct: 352 KDKKEAQRLISEGEANCIIGTNALIQEKVSYKNLALVVTDEQHRFGVRQREALAGKGLNT 411

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           HVL M+ATPIPRTL +   GD+ IS I E P GR PIK  ++         + +K  +  
Sbjct: 412 HVLAMSATPIPRTLAIILYGDLHISVINELPGGRLPIKNCVVGTEYRPTAYKFIKDQVEA 471

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKN 539
           G++AY ICP IEE +     +VV+   +L ++     S+A++HG+M    K+ +M++F  
Sbjct: 472 GRQAYVICPMIEEGEMDGVTNVVDYTETLRQNLPPDISVAMLHGKMKPAQKDEIMEAFAR 531

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L++TTVIEVGI+V +A++++IENAE FGL+QLHQLRGRVGRG+  S CI L +  
Sbjct: 532 KDIDVLVSTTVIEVGINVPNATVMMIENAERFGLSQLHQLRGRVGRGKYQSYCIFL-NTS 590

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            S ++  RL ++  T DGF IAEEDL+QR  G++ G++QSG   F +        L++ +
Sbjct: 591 ESDDAKKRLDIMNKTNDGFKIAEEDLRQRGPGDLFGVRQSGDLNFRLGDIYHDSDLVKES 650

Query: 660 RKDAKHILTQDPDLTSVRGQSIR 682
             DA  IL++DP+L S +   +R
Sbjct: 651 AMDADRILSEDPELLSTQYSVLR 673


>gi|313904074|ref|ZP_07837454.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
 gi|313471223|gb|EFR66545.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
          Length = 694

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 223/684 (32%), Positives = 353/684 (51%), Gaps = 18/684 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             L   +G+G+K      +      A      DL+ Y+P  +        +     +   
Sbjct: 9   DSLRNLKGIGQKTEEAFHR------AGIMNLRDLIRYYPREYDSFEEPVPVGRCVADIKN 62

Query: 71  TITGYISQHSSFQLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            +   ++     +   ++   IL L D TG + + +F+     L+N    G      G +
Sbjct: 63  AVVAKVTSRPVVRTFGKKSITILNLQDETGTLQVNWFH--MPFLRNTIKIGVYYVFRGPV 120

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
                R IM HP              +  +Y L  GL+ ++ +K + + L       E +
Sbjct: 121 IAKGGRKIMEHPQLYTREEYMKLTGQMLPIYPLTAGLTNNMVRKAVTQLLEMQRTEEEIL 180

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              + +++    I  A + IH P  +++      AR RLA++E     + +  +R     
Sbjct: 181 PDTVREEEGLCEINFARSQIHFPENSENL---LIARNRLAFEEFFLFLLGVERLRAINDT 237

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   E    + ++ ++P+  T +Q++   +I +D++ K  M R++QGDVGSGKT++
Sbjct: 238 TENHFPMREVWETEDVIASLPYKLTGAQQAVWGEIEKDLASKRLMNRLVQGDVGSGKTIL 297

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII---VEIITGNMPQAHRRK 366
           A +AM  A E G Q+ +M P  +LA QHY+   +  +   I      ++ G+     +R+
Sbjct: 298 AFLAMIMAYENGFQSALMVPTEVLAVQHYQAFTELLEKNGITDLCPVLLRGSCTAKEKRE 357

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E+I+ G+   IIGTHAL Q+ ++Y KL LVI DEQHRFGV+QR  L  K   P+VL+M
Sbjct: 358 IYEQISSGKTRAIIGTHALIQEKVEYEKLGLVITDEQHRFGVKQREALAGKGYPPNVLVM 417

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL +   GD+DIS + + PA R PIK  ++  +  D     ++  +  G + Y
Sbjct: 418 SATPIPRTLAMILYGDLDISILNDMPAHRLPIKNCVVNTSYRDTAYRFMRKEVEAGHQVY 477

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKL 544
            ICP +E  +E +  +V E    L   F S IA+  +HG+M   +K+ +MD+F  G  K+
Sbjct: 478 VICPMVEPNEELSCENVTEYAQKLKNVFGSEIAVEALHGQMRPKEKQEIMDAFARGEIKI 537

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CI +      + S
Sbjct: 538 LVSTTVIEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGDAQSYCIFMQGDGKKETS 597

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL +L ++ DGF IAEEDLK R  G++ G++QSG+  F IA       LL  A    K
Sbjct: 598 -ERLDILNHSNDGFYIAEEDLKLRGPGDLFGVRQSGIALFQIADIYRDKDLLRRAGTAVK 656

Query: 665 HILTQDPDLTSVRGQSIRILLYLY 688
            +L  DPDL   + +++   L  Y
Sbjct: 657 DLLELDPDLELPQNRALAKALQEY 680


>gi|290957125|ref|YP_003488307.1| ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
 gi|260646651|emb|CBG69748.1| putative ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
          Length = 751

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 222/758 (29%), Positives = 366/758 (48%), Gaps = 76/758 (10%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P+   PL   L      G   +  +++ +           DLL ++P  + +R    +++
Sbjct: 10  PALEEPLKNSL------GAATAKVMAEHL-----GLHTVGDLLHHYPRRYEERGRLTRLA 58

Query: 63  EISEERIVTITGYISQHS-------SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKN 115
           ++  +  VT+   ++               K +  ++ + DG+G + L+FF         
Sbjct: 59  DLPMDEHVTVVAQVADARLHTFASAKAPRGKGQRLEVTITDGSGRLQLVFFGHGVHKPHK 118

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF---------PLIEAVYSLPTGL 166
               G +    GK+     R+ + HP Y     +  +            +  +Y     L
Sbjct: 119 DLLPGTRALFAGKVSVFNRRLQLAHPAYELLRGEGDSEDTETVGTWAGALIPIYPATAKL 178

Query: 167 SVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226
                 K +   L       + +   L + +   S+ +A   IH P    D +     R+
Sbjct: 179 ESWKIAKAVQTVLPSAQEAVDPLPDSLREGRGLVSLPDALVKIHRPHTKADRDSA---RD 235

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDIL 285
           RL +DE    Q+AL   R    +   +                +PF+ T  Q    ++I 
Sbjct: 236 RLKWDEAFVLQVALARRRHADSQLPAVARRPASDGLLTAFDARLPFTLTDGQRKVSREIF 295

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY- 344
            D++ ++ M R+LQG+VGSGKTLVAL AM A V+AGGQA ++AP  +LAQQH+  + +  
Sbjct: 296 DDLATEHPMHRLLQGEVGSGKTLVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSVTEMM 355

Query: 345 ----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
                            V ++TG+M  A RR+AL  +  G+A I+IGTHAL +D +Q++ 
Sbjct: 356 GELAEGGMLGGSEHATKVVLLTGSMGAAGRRQALLDLVTGEAGIVIGTHALIEDKVQFHD 415

Query: 395 LILVIVDEQHRFGVQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           L LV+VDEQHRFGV+QR  L  +    PH+L+MTATPIPRT+ +T  GD+D S + + PA
Sbjct: 416 LGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLDTSVLDQLPA 475

Query: 454 GRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQI----------------- 492
           GR PI + ++P       +    ER++  +  G +AY +CP+I                 
Sbjct: 476 GRSPIASHVVPAADKPHFLARAWERVREEVENGHQAYVVCPRIGDDVDEPADPNRTGAKK 535

Query: 493 -------EEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
                  +E ++    +V++  + L +       + ++HGRM   DK++VM  F  G   
Sbjct: 536 SGGKSPEDEAEKRPPLAVLDVADQLAKGPLQGLRVEVLHGRMHPDDKDAVMRRFAAGETH 595

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG     C+L+   P +  
Sbjct: 596 VLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVTEMPEASP 655

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKD 662
           +  RL  +  T DGF ++  DL+QR+EG++LG  QSG      +      + ++  AR++
Sbjct: 656 ARQRLGAVAATLDGFELSRIDLEQRREGDVLGQAQSGARTSLRMLTVIDDEEIIAEARQE 715

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A  ++  DPDL  +   ++R  L      E  Q++  G
Sbjct: 716 AAAVVAADPDLDHLP--ALRTALDALLDEEREQYLDKG 751


>gi|33861313|ref|NP_892874.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633890|emb|CAE19215.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 818

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 235/704 (33%), Positives = 384/704 (54%), Gaps = 29/704 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + +   + +GK     L+++            D++ Y P +++D   R KI  +  + 
Sbjct: 123 LNSDIGLIKSIGKINKNKLNEL------GIYCIKDIINYFPRTYLDYTNRVKIINLKPDN 176

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVF 117
           + T    + +   ++        I+   + D T  I +  F+              K+++
Sbjct: 177 LYTCIATVKKFYIYKSSNNSNLSIMNIVIFDETSSIKVTKFFLGKRFRSYSFFSSQKSLY 236

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF---PLIEAVYSLPTGLSVDLFKKI 174
             G K+ ++GK+K  +     V P     N+ + +F     I  +YSL    S   F ++
Sbjct: 237 IPGTKLAISGKVKLSEYGKNFVDPQIEILNTNEESFNFSGKIMPLYSLSESFSNLSFIRL 296

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           I   +      P+ + +  L   S  S +++   IH P        +   ++RL +DEL 
Sbjct: 297 IKRVIIYSKQYPDILNQKQLNFLSLVSKSDSLINIHLPVNQNALIES---KKRLVFDELF 353

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q+  LL +++  K++ I  +++     +  L  +PF  TKSQE  + +I  D+S    
Sbjct: 354 LLQMKFLLRKRKNNKKLTIQKSIKKNFLLKDFLNKVPFQLTKSQEKVLDEIKSDLSDLTP 413

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT++A+  +   +E   Q  +M P  +LA QHY+ + ++     + VE
Sbjct: 414 MSRLLQGDVGSGKTIIAIATLLIELEKDQQGALMVPTEVLATQHYKNLIQFLNPLLVSVE 473

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TGN PQ  R++ L  + +G   I++GTHALF+D + +  L +V++DEQHRFGV QR +
Sbjct: 474 LLTGNTPQKKRKEILTNLKNGMVDILVGTHALFEDKVVFNSLGMVVIDEQHRFGVTQRNR 533

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K    ++L MTATPIPRTL L+  GD+DIS+ITE P GR PI T II    ++++ +
Sbjct: 534 LLNKGDNTNLLSMTATPIPRTLALSLYGDLDISQITELPPGRVPITTKIISEEELNKLFK 593

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH--FTSSIAIIHGRMSDIDKE 531
           R++  + +GK+AY I P IE+ ++ N  S  + +  L E     + + ++HG+++  +K 
Sbjct: 594 RVENEIDKGKQAYVILPLIEDSEKMNLSSAKKIYQYLSEEIFLKNKVGLLHGKLNSEEKN 653

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           +V++SF N    +L++TTVIEVGIDV +ASI+II N+E FGL+QLHQLRGRVGRG + S 
Sbjct: 654 NVINSFVNNEVNILVSTTVIEVGIDVPNASIMIIYNSERFGLSQLHQLRGRVGRGSQKSF 713

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C L+           RL VL+ + DGF IAE+DL+ R  G++LG KQSG+P F++     
Sbjct: 714 CYLVTSENNGLE-NKRLRVLEKSNDGFYIAEKDLELRGPGQLLGYKQSGLPDFVLDNLPN 772

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           +  L+E AR++A+ +L +DPDL       ++ LL     N+   
Sbjct: 773 NKVLIEKAREEAQRVLKEDPDLR--ENILLKDLLIDNSNNKFIH 814


>gi|294339213|emb|CAZ87567.1| ATP-dependent DNA helicase recG [Thiomonas sp. 3As]
          Length = 719

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 235/697 (33%), Positives = 366/697 (52%), Gaps = 34/697 (4%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
                 L+++            D+  + P  + D      +  + +  +VT    ++Q  
Sbjct: 33  PARPTPLARL------GLHTDWDIALHLPLRYEDETRLTPLGALRDGELVTTDAVVTQAQ 86

Query: 81  SFQLQKRRPYKILLND---GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
                 RR   + L D   G   +TL  F+     LK     G ++ V G++++      
Sbjct: 87  VQGRAPRRQLLVRLQDPEAGDAVLTLRLFHFYPNQLK-TLQPGVRLRVHGQVRQGLFGWE 145

Query: 138 MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197
           MVHP +   ++       +  VY    G+     +K +  AL RL V  + + ++ L + 
Sbjct: 146 MVHPTWKLVDANAPLPNTLTPVYPTTAGVPQSYLRKAVAGALERL-VWRDTVPQEELTRH 204

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWT---SPARERLAYDELLAGQIALLLMRKQ---FKKEI 251
             P +  +   +H P  A          PA+ RL +DELLA Q+A    R Q   +K   
Sbjct: 205 HLPDLPSSLRTLHAPPAAALPALEAGAHPAQRRLKFDELLAQQLAQQQARAQRQRWKAPT 264

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                    +  ++   IPF+ T +QE  + +I  D++Q   M R+LQGDVGSGKT+VA 
Sbjct: 265 LPAAPGAHSLPAQLRAAIPFTLTAAQERCVAEIAADLAQTAPMHRLLQGDVGSGKTVVAA 324

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +A A AV +G Q  +MAP  ILA QH   +  + +   + V  ++G+  +  R  AL+R+
Sbjct: 325 LAAAQAVASGWQCALMAPTEILAAQHARKLADWLEPLGVGVAWLSGSQTKKEREAALQRV 384

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--------APHV 423
           A GQA +++GTHA+ Q  +++ +L L IVDEQHRFGV QRL L              PH+
Sbjct: 385 ASGQAQLVLGTHAVIQAQVRFARLGLAIVDEQHRFGVAQRLALRDSLRAGTQGSGLQPHL 444

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL +   GD+D+S I   P GR P++T ++  +R DE+I R+  + ++G+
Sbjct: 445 LMMSATPIPRTLAMALFGDLDVSTIDVLPPGRTPVRTSVVSTDRRDELIARVGALTAQGR 504

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-------IAIIHGRMSDIDKESVMDS 536
           +AYW+CP +EE +  + ++ V     L     +        + ++HGRM   +K + M +
Sbjct: 505 QAYWVCPLVEESETLDLQNAVATHAELSAALATRSGQGAVQVGLLHGRMKAQEKRATMQA 564

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   LL+ATTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S C+LL+
Sbjct: 565 FSAGEIGLLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAQSDCVLLF 624

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLS  +  RL  ++   DGF +A++DL+ R  GE+LG++QSG+P    A       LL
Sbjct: 625 TSPLSPTARERLGAMRELTDGFALAQKDLELRGPGELLGLRQSGVPGLRYADLAQDIDLL 684

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           E AR  A+ +L   P+  + R  + R L   + +  A
Sbjct: 685 EAARDTAQRLLVAAPE--AARQHAARWLGEGFDWLSA 719


>gi|237747216|ref|ZP_04577696.1| ATP-dependent DNA helicase recG [Oxalobacter formigenes HOxBLS]
 gi|229378567|gb|EEO28658.1| ATP-dependent DNA helicase recG [Oxalobacter formigenes HOxBLS]
          Length = 687

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 248/678 (36%), Positives = 386/678 (56%), Gaps = 22/678 (3%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI--VTITGYISQHSSFQ 83
            L ++           ++   + PS + D      I+E    RI    + G ++  S  Q
Sbjct: 16  KLERL------GIRTDMETALHLPSRYEDETKLTNIAEALFRRIGHAQVEGVVTA-SEIQ 68

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
              RR   + ++DGT ++ L F +     +K     G++I V G++++  N + M+HP Y
Sbjct: 69  YHPRRQLVVFVSDGTSQLVLRFLHFYGSQVKQ-LAVGKRIRVRGELRQGYNGVEMIHPAY 127

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
              +        +  VY    G+S +  +K I   L RL  L + + + LL +   P  +
Sbjct: 128 RIVDESTPLPVALTPVYPTCDGISQNYLRKEIGAVLKRLD-LSDTLPEALLAELELPLFS 186

Query: 204 EAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           +A   +HNP    D     + + PA +R+ +DELLA Q+++   +   +++   P+   G
Sbjct: 187 DAIRFLHNPPAGVDENALLDRSHPAWKRMKFDELLAQQLSMRRAQIARRRQKSHPLEKTG 246

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           ++ ++ +R++PF+ T +Q+  + +I +DM +   M R+LQGDVGSGKT+VA IA   A++
Sbjct: 247 ELTERFVRSLPFALTHAQQEVLAEIREDMGRAFPMQRLLQGDVGSGKTVVAAIAALLAID 306

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G QA +MAP  ILA+QH+E +  + +   + V  I+G+M +  +  AL  I  GQA  +
Sbjct: 307 NGFQAAMMAPTEILAEQHFERLSSWMKPLGLSVIGISGSMKKKEKDAALSMIQTGQAQFV 366

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KATAPHVLLMTATPIPRTL 435
           IGTHAL QD++++  L LVIVDEQHRFGV QRL L       +  PH L+M+ATPIPRTL
Sbjct: 367 IGTHALIQDAVRFANLGLVIVDEQHRFGVGQRLVLRNKGDLHSAIPHQLMMSATPIPRTL 426

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +T   D+D+S I   P GRKP+ T +I   R DEVI R+     +G++ YW+CP IEE 
Sbjct: 427 AMTFYADLDVSVIAGLPPGRKPVVTRLIDQERRDEVIARIHAATLDGRQVYWVCPLIEES 486

Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           +    ++ V+    L +     S+ ++HGRM  ++K+ VM  F +G  ++L+ATTVIEVG
Sbjct: 487 ESLQLQTAVDTHAVLADALKGLSVGLVHGRMKPVEKQRVMSDFVDGRIQVLVATTVIEVG 546

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +AS+++IE+AE FGL+QLHQLRGRVGRG+  S C+L+Y  PL + +  RL  ++ T
Sbjct: 547 VDVPNASLMVIEHAERFGLSQLHQLRGRVGRGDVDSVCLLMYQKPLGETARQRLRTMRET 606

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT-QDPDL 673
            DGF+IA+ DL+ R  GE LG +QSG      A  E    L+E A   A+ +LT + PD 
Sbjct: 607 NDGFIIAQRDLEIRGPGEFLGSRQSGQAMLRFADLEKDGELIEKAASLAEALLTKRFPDS 666

Query: 674 TSVRGQSI-RILLYLYQY 690
             +    + R L Y  ++
Sbjct: 667 DKIMTAHLTRWLDYREEF 684


>gi|117928787|ref|YP_873338.1| ATP-dependent DNA helicase RecG [Acidothermus cellulolyticus 11B]
 gi|117649250|gb|ABK53352.1| ATP-dependent DNA helicase RecG [Acidothermus cellulolyticus 11B]
          Length = 741

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 230/750 (30%), Positives = 370/750 (49%), Gaps = 71/750 (9%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           + L  PL     +G + +  L+++            DLL Y P  +  R     + E+ +
Sbjct: 5   DELRLPLRQV--LGGRTAAALARL------GLDTVGDLLTYFPRRYHQRGELTPLRELRD 56

Query: 67  ERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           +   TI   I      +L   RR Y +++ DG  ++ L FF      L+     G +   
Sbjct: 57  DEHATIFAEILSVRERRLSGHRRMYDVVVTDGDEKLKLRFFNLTNWQLEK-LAVGGRGFF 115

Query: 126 TGKIKKLKNRIIMVHPHYIF--HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           +GK+ + K    +VHP   F   ++       I  VY     +S  +  + +   L  L 
Sbjct: 116 SGKVTRFKGERQIVHPEMEFVDPDTDPAFASAIIPVYPAAEHISSGMIWRAVRHVLDTLD 175

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           +  + +  D+ ++ +  ++  A   +H P    D    +  R R  + E    Q+AL L 
Sbjct: 176 ISEDPLPADIRRRHNLVTLRRALENMHRPADLADV---ATGRRRFTFQEAFVFQLALGLR 232

Query: 244 RKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           R+  + E  +P     G +       +PF+ T+ Q  A  DI  D++  + M R+L G+V
Sbjct: 233 RRMMQAEQAVPRPRRRGGLLDAFDAALPFALTEGQRRAGADIEADLAAPHPMHRLLHGEV 292

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-----------YTQNTQII 351
           GSGKTLVAL AM   V+AGGQA ++AP  +LA QHY+ I +               T   
Sbjct: 293 GSGKTLVALRAMLTVVDAGGQAALLAPTEVLAMQHYQTITRLLGSLALAGQLGGAETATR 352

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V +ITG++    RR+ L+ IA G+  I++GTHAL  D++++  L LV+VDEQHRFGV+QR
Sbjct: 353 VALITGSVTGGARRELLDAIAAGEVGIVVGTHALLYDTVRFADLGLVVVDEQHRFGVEQR 412

Query: 412 LKLT---QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
             L       T PHVL+MTATPIPRT+ LT  GD+DIS + E+P+G   + T ++P++  
Sbjct: 413 AALRTKGSDGTVPHVLVMTATPIPRTVALTVYGDLDISVLRERPSGDPKVDTFVVPLSEK 472

Query: 469 ----DEVIERLKVVLSEGKKAYWICPQIEEKKESNFR----------------------- 501
               + V  R++   + G++ Y ICP+I   ++                           
Sbjct: 473 PAWAERVWARVREEAAAGRQVYVICPRISTGEDDTGDESDDIVVPAEPADNGRLPGLSGA 532

Query: 502 ----------SVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                     +V E   +L +       I  +HGRM    K++V+  F  G   +L+ATT
Sbjct: 533 GRPPRVRRAAAVDEVAATLRDGPLRGLRIGTLHGRMDAAAKDAVLADFSAGRLDVLVATT 592

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V+EVG+DV +AS+++I +A+ FG++QLHQLRGR+GR  + + C+L+   P    +Y RL+
Sbjct: 593 VVEVGVDVPNASMMVILDADRFGVSQLHQLRGRIGRAGQRAVCLLVTEAPADTAAYARLT 652

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            +  T DGF +AE DL+QR EG +  + Q G   F       H  ++E AR +A+ ++  
Sbjct: 653 GVAATCDGFRLAELDLEQRGEGTVRDVVQHGRSDFRFLSLLRHRDVIETARAEAEQLIAA 712

Query: 670 DPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           DP+LT   G +  +   L   ++  +++  
Sbjct: 713 DPELTQHPGLANAVAPLL--ADDRLRYVDI 740


>gi|296111735|ref|YP_003622117.1| ATP-dependent DNA helicase RecG [Leuconostoc kimchii IMSNU 11154]
 gi|295833267|gb|ADG41148.1| ATP-dependent DNA helicase RecG [Leuconostoc kimchii IMSNU 11154]
          Length = 676

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 219/662 (33%), Positives = 352/662 (53%), Gaps = 25/662 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +    GVG K    L ++            DL+ Y P  + D   R   SE  +   VT 
Sbjct: 8   VDVLPGVGPKRLNALHEL------GIFTIEDLISYFPFRYEDLGERLP-SETLDGEKVTF 60

Query: 73  TGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +S  +   +  K+   +  L      I + FF +    +      G++I V G    
Sbjct: 61  KGIVSAPAVVTRFGKKNQTRFGLLIEHENIRVTFFNQ--PWIAQNIDVGQEIAVYGTYNA 118

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIE 190
            K  +  +          + +   ++ +Y     ++    + +I  A + +   L   + 
Sbjct: 119 AKAALTGMKMI-------NASTDALDPIYPASKQVTAKTIRHLIELAWADVRGTLDSLVP 171

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             + +K            +H P    D      AR   A++E    Q+ L L++   +  
Sbjct: 172 TTIREKYRLLDRNSQIEAMHFP---VDMLAAKAARRSAAFEEFFVFQMRLQLLKLADQNF 228

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            G  IN +    +K    +PF  T +Q+  I +ILQD  +   M R+LQGDVGSGKT+VA
Sbjct: 229 AGEGINYDTLALEKFEAELPFDLTPAQQKVISEILQDQKRPRHMNRLLQGDVGSGKTVVA 288

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRKAL 368
            +AM A V AG QA IMAP  ILAQQH   + +  +N  +   VE++T  +  A RR+ L
Sbjct: 289 AMAMYAVVTAGMQAAIMAPTEILAQQHALNLAQLFENAGVSLRVELLTSGLKVAARRQLL 348

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +  G+  I++GTHAL Q  + ++ L L ++DEQHRFGV+QR  L +    P +L MTA
Sbjct: 349 EDLESGEIDILVGTHALLQPDVAFHHLGLAVIDEQHRFGVKQRAALRENGVNPDILAMTA 408

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I + P GRK I+T  +  N++D  I  +K  +  G +AY +
Sbjct: 409 TPIPRTLSITAYGEMDVSVIDQLPIGRKAIQTTRMSHNQLDHAIAFVKKQIDAGAQAYVV 468

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            P IEE +  + ++    + ++   F   ++ ++HGR+S+ +K+++M  FK    ++L+A
Sbjct: 469 TPLIEESESLDVQNATAMYEAMQLEFPQYTVGLLHGRLSNDEKKALMADFKANHIQILVA 528

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGRG   S  IL+  P  +     R
Sbjct: 529 TTVIEVGVDVPNATVMLILDADRFGLAQLHQLRGRVGRGHRQSYTILVADPK-TDYGTAR 587

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L  +  T +GF++A+ DL+ R  G+ILG KQSG+P+F++  P    +++EIA+++A  ++
Sbjct: 588 LDAMVETTNGFILAQRDLELRGSGDILGTKQSGVPEFVVGDPIKDLTMMEIAQQEAITLV 647

Query: 668 TQ 669
           +Q
Sbjct: 648 SQ 649


>gi|260887360|ref|ZP_05898623.1| ATP-dependent DNA helicase RecG [Selenomonas sputigena ATCC 35185]
 gi|260862898|gb|EEX77398.1| ATP-dependent DNA helicase RecG [Selenomonas sputigena ATCC 35185]
          Length = 711

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 228/690 (33%), Positives = 356/690 (51%), Gaps = 22/690 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L   L   +GVG K    L+KI            DLL Y+P ++ DR     ++ I+  
Sbjct: 28  ELQTSLLELKGVGAKKYEALNKI------GLFTVYDLLTYYPRTYEDRRVLTPLAAIAVG 81

Query: 68  RIVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
               +TG I   +  +  +      + ++DGTG + + FF +K   LK     G ++   
Sbjct: 82  EQQAVTGVIRHIAERRTGRGIHILSVDIDDGTGFLQVTFFNQK--FLKGKLKAGMQLFAV 139

Query: 127 GKIKK---LKNRIIMVH-PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           GKI      + +  M     +            I  VY+    L+   F+ ++      +
Sbjct: 140 GKIDYAFGGRGKKQMSQVKDFSLMEKGGEAALGILPVYAASGSLNQKFFRTLLTGVFQGI 199

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E + + + Q+    +  EA+  +H P      E    ARERL ++EL   Q  LLL
Sbjct: 200 GKIVETLPESICQRYRLVAREEAYREVHFPESP---EALHLARERLIFEELYLIQCGLLL 256

Query: 243 MRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +R++ +++   +      ++++     +PF  T+ QE A +DI QDM     M R++QGD
Sbjct: 257 LRRESREKRKGVRHLGASRLSRGAREALPFRLTEDQEKAWRDIRQDMELALPMRRLVQGD 316

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           V SGKT +AL+A+   VE G Q   MAP  ILA+QH++   +  ++  + + ++TG + +
Sbjct: 317 VSSGKTALALLALVKTVENGFQGAFMAPTEILARQHFDKFSELLRDLPVRLLLLTGRLSK 376

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-A 420
             R  A   I      I+IGTHAL Q+ + +  L LV+ DEQHRFGV+QR  L ++A   
Sbjct: 377 KEREAAYAAIEAHDVDIVIGTHALIQEPVAFAALGLVVTDEQHRFGVEQRAALEKRAHLT 436

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P +L+MTATPIPRT+ LT  GD+D+S+I   P GR P++T +    R D +   ++  + 
Sbjct: 437 PDMLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRVPVETFVRTPARRDLIYRFVRQEIE 496

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538
            G++AY +CP +EE    +  S  E +  L           ++HG++   +KE+VM  F 
Sbjct: 497 RGRQAYVVCPLVEESDTLDLPSAQEVYAELSAGVFREVRCGLVHGKLRGKEKEAVMADFH 556

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ TTVIEVG+DV +ASI++IENAE FGLAQLHQLRGRVGRG   S CIL+   
Sbjct: 557 AGKLDVLVTTTVIEVGVDVPNASIMVIENAERFGLAQLHQLRGRVGRGAHRSYCILVSAA 616

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
                +  RL++L++  DGF++AEEDLK R  G+  G  Q G+P   +A       +L  
Sbjct: 617 RT-AAAKKRLALLESVRDGFVLAEEDLKLRGPGQFFGAMQHGLPDLKMADALRDVDILLK 675

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLY 688
           AR+ A   +   P +     + +R+    +
Sbjct: 676 ARRAALETMES-PAMRKEVAEILRLEYKEF 704


>gi|33592698|ref|NP_880342.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
 gi|33572344|emb|CAE41901.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
 gi|332382113|gb|AEE66960.1| ATP-dependent DNA helicase RecG [Bordetella pertussis CS]
          Length = 656

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 227/641 (35%), Positives = 344/641 (53%), Gaps = 19/641 (2%)

Query: 46  FYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLF 105
            + P  + D      +S +       + G I + S    + RR    +L D TGE+ L +
Sbjct: 2   LHLPLRYEDETRVTPVSSLRPGFAAQVEGEILR-SEVLYRPRRQLTAVLADDTGELQLRW 60

Query: 106 FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG 165
                   K     GR++   G+++       MVHP     ++       +  VY    G
Sbjct: 61  LNFYPSQQKQ-LTVGRRLRARGEVRGGLFGREMVHP--RMSSADQPLPASLTPVYPSTDG 117

Query: 166 LSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWT 221
           L     +K I +AL+R   L + + ++  ++      A A  ++H P          E  
Sbjct: 118 LPQPTLRKAIGQALARAD-LSDTLPEEARRRYGLAEFAPAVRLLHAPPPDAAEHELMERI 176

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV---EGKIAQKILRNIPFSPTKSQE 278
            PA  R+ +DELLA Q++L   R   + +   P+     E  +  ++   +PF+ T +Q+
Sbjct: 177 HPAWRRIKFDELLAQQLSLAAARAARRVKRAEPLPASQDEDGLVARLYEALPFALTGAQQ 236

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + +I  D++Q   M R+LQGDVGSGKT+VA IA A A+    Q  +MAP  ILA+QH+
Sbjct: 237 RVVAEIAADLAQPYPMHRLLQGDVGSGKTVVAAIAAAQAIACEAQVALMAPTEILAEQHF 296

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             +  + +   + V  ++G++    RR+A   +A G   +++GT AL QD + + +L L 
Sbjct: 297 RKLVGWLEPLGVAVAWLSGSLSAKARREAAAAVADGSVQLVVGTQALIQDHVMFQRLGLS 356

Query: 399 IVDEQHRFGVQQRLKLTQKATA------PHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           IVDEQHRFGV QRL L++K         PH L M+ATPIPRTL +T   D+D+S I E P
Sbjct: 357 IVDEQHRFGVGQRLALSRKGETGRGVIVPHQLNMSATPIPRTLAMTFFADLDVSVIDELP 416

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            GR P+ T ++   R +EVI  +     +G++AYW+CP +EE +    ++ V+   ++  
Sbjct: 417 PGRTPVVTKLVADARREEVIGHIAHAARQGRQAYWVCPLVEESEALELQTAVDTHEAMRA 476

Query: 513 HFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 I ++HGR+   +K  VM +F+ G   LL+ATTVIEVG+DV +AS+++IE+AE F
Sbjct: 477 ALPDLRIGLVHGRLPQAEKAEVMRAFREGEIDLLVATTVIEVGVDVPNASLMVIEHAERF 536

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GLAQLHQLRGRVGRG   S C+LLY  PLS+ +  RL  +  T DGF IA  DL+QR  G
Sbjct: 537 GLAQLHQLRGRVGRGTAESICVLLYQAPLSQVARQRLRAMFETSDGFEIARRDLEQRGPG 596

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           E LG +QSG+     A  E   ++ E AR+ A  +  + P+
Sbjct: 597 EFLGTRQSGLALLRFADLEADVAIAEQAREAAVWLRAKHPE 637


>gi|291522172|emb|CBK80465.1| ATP-dependent DNA helicase RecG [Coprococcus catus GD/7]
          Length = 687

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 230/689 (33%), Positives = 364/689 (52%), Gaps = 21/689 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +ST +G+G K    L++I            D+  ++P  +        I     +     
Sbjct: 7   ISTIKGIGAKTESHLARI------GIYTVGDMAEHYPREYHAYDTPVSIENTEYDNRRQS 60

Query: 73  TGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
              +    + +L KR       ++L+ G   + +++++  +  ++     G  + + GKI
Sbjct: 61  GYRVIFSETPKLLKRGRTPIVSVMLHAGNASVQVVWYH--SPYVRQQLKPGCTVILYGKI 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
               +R ++ HP     +   +    ++ VY L  GL+ + F K +   L    +LP+ +
Sbjct: 119 TSKGSRRMLDHPDIYTEDQYALLQKSLQPVYGLTEGLTQNFFMKTMHSILDSGLLLPDPL 178

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             D+ ++        A   IH P      E    AR+RL +DE L   +++  ++K+  +
Sbjct: 179 PADIRRQYQLSEYNYALRQIHFPENE---EACRMARKRLVFDEFLVFALSVKQLKKENHQ 235

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   E     +++ ++P+  TK+Q     +I +DM     M R++QGDVGSGKT++
Sbjct: 236 IENHYQIQESAAVSQLIASLPYHLTKAQLRVWHEIEEDMKSPVVMNRLVQGDVGSGKTMI 295

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A +AM AA +AG Q+ +MAP  +LA+QHYE ++       I   ++TG+M  A +RK   
Sbjct: 296 AALAMFAAAKAGFQSCMMAPTEVLARQHYENLQALYAPFGIETVLLTGSMTAAAKRKTYS 355

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMT 427
           RI + +A +IIGT ALFQ+   Y KL L++ DEQHRFGV+QR +L        PHVL+M+
Sbjct: 356 RIENHEADVIIGTQALFQEKAVYDKLALIVTDEQHRFGVRQREQLAMKSNGGEPHVLVMS 415

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +    D+DIS + EKPA R PIK  ++  +        L+  + +G + Y 
Sbjct: 416 ATPIPRTLAIILYSDLDISVVDEKPANRLPIKNCVVGTSYRPTAYRFLEQQIRQGHQVYV 475

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP +EE +     +V E    L +   +   +  +HG+M    K  +M+ F  G  ++L
Sbjct: 476 VCPMVEESENIEAENVQEYTEKLKKVLPADIKVEYLHGQMKPEQKNGIMERFSEGEIQVL 535

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVG+DV +A++++IENAE FGLAQLHQLRGRVGRG+  S CI +Y    +K   
Sbjct: 536 VSTTVIEVGVDVPNATVMMIENAERFGLAQLHQLRGRVGRGDAQSYCIFIYGQE-NKKVK 594

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL+++  T DGF IA EDLK R  G++ GI+QSG   F I       + L  A K A H
Sbjct: 595 DRLNIMLGTNDGFKIASEDLKLRGPGDMFGIRQSGSMIFKIGDVFADSACLVEAGKAADH 654

Query: 666 ILTQDPDLTSVRGQSI--RILLYLYQYNE 692
           IL++DP+L S +   +  RI   L +  E
Sbjct: 655 ILSEDPELKSEKYVFLGSRITAKLSENRE 683


>gi|320107807|ref|YP_004183397.1| ATP-dependent DNA helicase RecG [Terriglobus saanensis SP1PR4]
 gi|319926328|gb|ADV83403.1| ATP-dependent DNA helicase RecG [Terriglobus saanensis SP1PR4]
          Length = 747

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 237/755 (31%), Positives = 377/755 (49%), Gaps = 74/755 (9%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG++ +  L               DLL++ P  + DR +   I+E+    
Sbjct: 3   LSTHVKFVKGVGERNAAAL------VQRGVETVEDLLYHLPFRYEDRLHPRPIAELKAGE 56

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           + ++ G +        +    +++ +  G   +  ++F  +   LK+ F  G+ + + GK
Sbjct: 57  MASVIGEVRGSVLLHTRSMPLFEMTVAQGVDTVKAMWF--RGTYLKDKFKLGQTVALYGK 114

Query: 129 IKKLK---NRIIMVHPHYIFHNS-------QDVNFPLIEAVY-------SLPTGLSVDLF 171
           ++  +    +  M+ P +            + +    I  VY       +    L     
Sbjct: 115 MEPSRSNAGKFKMLQPQFEILPEPGEEGGFEMLEMGRIVPVYETLGGTTAWGAKLGSKWM 174

Query: 172 KKIIVEALSRLP---VLPEWIEKDLLQKKSFPSIAEAFNIIHNPR---KAKDFEWTS-PA 224
           ++++ + L  L     L E +   L +K       EA   +H P       D + ++ PA
Sbjct: 175 RRVVWDVLEELGREGTLDEPLPGALRKKLGLMDRLEALRRVHFPEAGTSMVDLQSSATPA 234

Query: 225 RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
             RL ++EL   ++ L L RK+ ++  G+P     K+ + I R +PF PT +Q+  + +I
Sbjct: 235 HRRLIFEELFYLELGLELKRKRMRERTGVPFTTGTKVREAIKRVLPFHPTPAQKRVLGEI 294

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
           + DM +   M R+LQGDVGSGKT+VA+ A   A+E G QA +MAP  ILA QHY   KK 
Sbjct: 295 VADMQKPQPMRRLLQGDVGSGKTIVAMQAAIVAIENGYQAALMAPTEILATQHYLSAKKL 354

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
             ++   V ++TG++    +R    +I  G++ +++GT AL Q+ + +  L LVIVDEQH
Sbjct: 355 LGDS-YTVTLLTGSLDAQQKRLNRRKIFAGESELVVGTQALIQEKVDFANLGLVIVDEQH 413

Query: 405 RFGVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           RFGV+QR  L +K     P VL+MTATPIPRTL +T  GD+D+S + E P GR PI T  
Sbjct: 414 RFGVRQRFTLMKKPGTGDPDVLVMTATPIPRTLAMTVYGDLDVSVLDELPPGRTPIVTRR 473

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----------------------- 499
               R +EV   +   +  G++AY + P IE  KE                         
Sbjct: 474 TGEERSEEVWAFVLKQVKMGRQAYIVYPMIEGAKEDQPELDFAVDPPAEVEEPKKRAAKK 533

Query: 500 -------------FRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKL 544
                         RS  E ++ L       I   ++HG++S  +KE  M  F+ G   +
Sbjct: 534 ATKPKKLFSEKTVMRSATEMYDHLRAGALRDIRLGLLHGKLSADEKEVTMRRFQRGEIDV 593

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+ATTVIEVG+DV +AS+++IE+AE FG+AQ+HQLRGRVGRG   S CIL+    +S  +
Sbjct: 594 LVATTVIEVGVDVPNASVMVIEHAERFGMAQMHQLRGRVGRGAAKSYCILVTGARVSPQA 653

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+  +  T++GF +AE DL QR  GE  G +Q+GMP F +A       LLE+A+K+A 
Sbjct: 654 EERVGAMVRTQNGFELAELDLAQRGPGEFFGTRQAGMPDFRVASLLRDRDLLEMAKKEAA 713

Query: 665 HILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
             + +  D+  V  + +R  L  +Q+   +  + A
Sbjct: 714 RFIERPYDVPEVEREMVRSQLK-HQWQRRYGLVEA 747


>gi|330838664|ref|YP_004413244.1| ATP-dependent DNA helicase RecG [Selenomonas sputigena ATCC 35185]
 gi|329746428|gb|AEB99784.1| ATP-dependent DNA helicase RecG [Selenomonas sputigena ATCC 35185]
          Length = 685

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 230/690 (33%), Positives = 356/690 (51%), Gaps = 22/690 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L   L   +GVG K    L+KI            DLL Y+P ++ DR     ++ I+  
Sbjct: 2   ELQTSLLELKGVGAKKYEALNKI------GLFTVYDLLTYYPRTYEDRRVLTPLAAIAVG 55

Query: 68  RIVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
               +TG I   +  +  +      + ++DGTG + + FF +K   LK     G ++   
Sbjct: 56  EQQAVTGVIRHIAERRTGRGIHILSVDIDDGTGFLQVTFFNQK--FLKGKLKAGMQLFAV 113

Query: 127 GKIKK---LKNRIIMVH-PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           GKI      + +  M     +            I  VY+    L+   F+ ++      +
Sbjct: 114 GKIDYAFGGRGKKQMSQVKDFSLMEKGGEAALGILPVYAASGSLNQKFFRTLLTGVFQGI 173

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E + + + Q+    +  EA+  +H P      E    ARERL ++EL   Q  LLL
Sbjct: 174 GKIVETLPESICQRYRLVAREEAYREVHFPESP---EALHLARERLIFEELYLIQCGLLL 230

Query: 243 MRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           +R++ + K  G+      ++++     +PF  T+ QE A +DI QDM     M R++QGD
Sbjct: 231 LRRESREKRKGVRHLGASRLSRGAREALPFRLTEDQEKAWRDIRQDMELALPMRRLVQGD 290

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           V SGKT +AL+A+   VE G Q   MAP  ILA+QH++   +  ++  + + ++TG + +
Sbjct: 291 VSSGKTALALLALVKTVENGFQGAFMAPTEILARQHFDKFSELLRDLPVRLLLLTGRLSK 350

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-A 420
             R  A   I      I+IGTHAL Q+ + +  L LV+ DEQHRFGV+QR  L ++A   
Sbjct: 351 KEREAAYAAIEAHDVDIVIGTHALIQEPVAFAALGLVVTDEQHRFGVEQRAALEKRAHLT 410

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P +L+MTATPIPRT+ LT  GD+D+S+I   P GR P++T +    R D +   ++  + 
Sbjct: 411 PDMLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRVPVETFVRTPARRDLIYRFVRQEIE 470

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFK 538
            G++AY +CP +EE    +  S  E +  L           ++HG++   +KE+VM  F 
Sbjct: 471 RGRQAYVVCPLVEESDTLDLPSAQEVYAELSAGVFREVRCGLVHGKLRGKEKEAVMADFH 530

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ TTVIEVG+DV +ASI++IENAE FGLAQLHQLRGRVGRG   S CIL+   
Sbjct: 531 AGKLDVLVTTTVIEVGVDVPNASIMVIENAERFGLAQLHQLRGRVGRGAHRSYCILVSAA 590

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
                +  RL++L++  DGF++AEEDLK R  G+  G  Q G+P   +A       +L  
Sbjct: 591 RT-AAAKKRLALLESVRDGFVLAEEDLKLRGPGQFFGAMQHGLPDLKMADALRDVDILLK 649

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLY 688
           AR+ A   +   P +     + +R+    +
Sbjct: 650 ARRAALETMES-PAMRKEVAEILRLEYKEF 678


>gi|312879670|ref|ZP_07739470.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM
           12260]
 gi|310782961|gb|EFQ23359.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM
           12260]
          Length = 686

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 228/702 (32%), Positives = 367/702 (52%), Gaps = 20/702 (2%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR  F   L  P+S   GVG +    LS++            D LF  P  + DR     
Sbjct: 1   MREPFDPEL--PVSRLPGVGPRREAGLSRL------GVRTLRDALFLFPRRYEDRRRLTP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           + E+ E R     G + + SS + Q +   + LL+D TG + LL+F+R    +      G
Sbjct: 53  LEELQEGRPALFRGRVGELSSQRSQGKHRVRGLLSDPTGCLRLLWFHRPG--VAAQLPPG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKK-IIVEA 178
            +    G+  +  + ++ V+P +   +  Q   +  I  VY    GL     +  ++ + 
Sbjct: 111 TEAVFWGRPARFGDALVCVNPEFWTGSVPQGEEWGRIVPVYPGTEGLPPRWLRSFLLSQV 170

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
               P +PE + + L++++    + EA   +H P    D      AR RLAY ELL  Q+
Sbjct: 171 ERCAPQIPEELPESLIRRRGLLPLKEAVRQLHAP---DDEVRWREARRRLAYQELLELQV 227

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
              L R+         +  E  ++++   ++PF PT  Q  A++ +  D+  ++ M R+L
Sbjct: 228 PFALRRRAAASLPPPVLRCEKGVSERFWADLPFDPTPGQREALRALEADLGGRHPMNRLL 287

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVAL A+   +  G Q   +AP  ILA+Q +E  ++        V+++ G 
Sbjct: 288 QGDVGSGKTLVALGALHLVLRGGAQGAYLAPTEILARQVWEVARRLPALAPFPVDLVLGG 347

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R +  E +   +  +++GTHAL +DS+++ +L L ++DEQHRFGV QR  L  K 
Sbjct: 348 RSLREREEQAEALERPEPRLVVGTHALLEDSVRFSRLGLAVIDEQHRFGVAQRAALAAKG 407

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            +PH+L+MTATPIPRTL L   GD+    + + P GR P+ T ++    +  V+  L+  
Sbjct: 408 RSPHLLVMTATPIPRTLSLALFGDLSSLALRDLPPGRSPVVTRVLGQKDLRRVLAFLRQE 467

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-AIIHGRMSDIDKESVMDSF 537
           L+ G +A+W+CP +EE + +     ++R  +L      S   ++HGR+    K + ++ F
Sbjct: 468 LARGGRAFWVCPLVEESEGTGLPGAMQRREALARALPESCPEVVHGRLDGAAKAAALERF 527

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G  +LL+ TTV+EVGIDV +A+++++E+ E FGL+QLHQLRGRVGRG     C+LL  
Sbjct: 528 RSGESRLLVGTTVLEVGIDVPEATVMVVEHGERFGLSQLHQLRGRVGRGSSRGVCLLLSG 587

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
               ++S  RL +L+   DGF IAE D   R  GE+ G++Q G   F +A   +  +LLE
Sbjct: 588 TEE-EDSLRRLRILERIGDGFRIAEADCALRGGGEMGGVRQHGDSGFKVADLRVDAALLE 646

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
            AR+DA+  +  +P L S      R  L   +Y + F+ +  
Sbjct: 647 QARQDAQDWVDAEPALDSCP--LFRKRLE-ERYPDVFRLLAG 685


>gi|269127644|ref|YP_003301014.1| ATP-dependent DNA helicase RecG [Thermomonospora curvata DSM 43183]
 gi|268312602|gb|ACY98976.1| ATP-dependent DNA helicase RecG [Thermomonospora curvata DSM 43183]
          Length = 736

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 226/739 (30%), Positives = 361/739 (48%), Gaps = 63/739 (8%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL     +G K +  L+              DL+ ++P  +  R     +  + +  
Sbjct: 4   LDEPLRNL--LGAKTAKVLA-----SGLELHTVGDLVHHYPRRYAQRGELTDLDGLVDGE 56

Query: 69  IVTITGYISQH--SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEML-KNVFFEGRKITV 125
            VT+   +++    +         ++ ++DG G + L FF RK     +     G +   
Sbjct: 57  HVTVMAEVTKVQGRTIPRSPGYLLEVTVSDGHGTLKLTFFGRKGAWRAEKELSPGVRGLF 116

Query: 126 TGKIKKLKNR------IIMVHPHYIFHNSQDVNFPL-------IEAVYSLPTGLSVDLFK 172
           +GK+   + R        + HP +     +             I  +Y    GL     +
Sbjct: 117 SGKVTTYRPRGGGRPQRQLTHPEFRVLPEEGSAGAAAREFAEEIIPIYPATKGLESWKIE 176

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           + +   L +L + P+ +   +L++     + EA   IH PR   + E     R RL +DE
Sbjct: 177 ECVQIVLDQLDLGPDPMPGPILRRHGLIGLGEALRGIHKPRDWGELERA---RRRLKWDE 233

Query: 233 LLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
               QIAL   RK        P   V G +       +PF+ T+ Q    ++I  D+S +
Sbjct: 234 AFVLQIALAQRRKAASALPAKPRPRVRGGLLDAFDAALPFTLTEGQLQVGEEIAADLSGE 293

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY------- 344
           + M R+LQGDVG+GKT+VAL AM   V+ GGQA ++AP  +LAQQHY  I          
Sbjct: 294 HPMHRLLQGDVGAGKTVVALRAMLQVVDGGGQAALLAPTEVLAQQHYRSITAMLGPLAEA 353

Query: 345 ----TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
                 +    V ++TG+     RR+AL   A G+A I++GTHAL Q+ +Q+  L LV+V
Sbjct: 354 GRLGGADKATRVVLLTGSQGAKARRQALLEAASGEAGIVVGTHALLQEHVQFADLGLVVV 413

Query: 401 DEQHRFGVQQRLKLTQKAT--APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           DEQHRFGV+QR  L +KA    PHVL+MTATPIPRT+ +T  GD++ S +++ P+GR  I
Sbjct: 414 DEQHRFGVEQRDALREKAAGGRPHVLVMTATPIPRTVAMTVFGDLETSTLSQLPSGRAEI 473

Query: 459 KTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQI-----EEKKESNFRSVVERFNSL 510
           KT ++P  R   +    ER++  +++G++AY +CP+I     EE          +     
Sbjct: 474 KTFVVPPERPAFLARTWERIREEVAQGRQAYIVCPRIGAQEDEEDDAPTPPPGPDEEGRR 533

Query: 511 HEHFTS--------------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                                I ++HG++   DK++VM  F  G   +L+ATTV+EVG+D
Sbjct: 534 APVAVLDLLPRLEEELLTGLRIGVLHGKLPPDDKDAVMRRFAAGEIDVLLATTVVEVGVD 593

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +A++++I +A+ FG++QLHQLRGRVGRG     C+L+        +  RL  + +T D
Sbjct: 594 VPNATVMVIMDADRFGVSQLHQLRGRVGRGSLPGLCLLVTDAEPGSRARQRLDAVASTTD 653

Query: 617 GFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           GF ++  DL+QR+EG++LG  Q+G      +      + L+  AR +A  ++  DPDL  
Sbjct: 654 GFALSRLDLEQRREGDVLGAAQAGRHSSLRLLTLLKDEELIRTARTEATALVEADPDLQG 713

Query: 676 VRGQSIRILLYLYQYNEAF 694
               +  + + L +    F
Sbjct: 714 HAALAAELAVMLDEERAGF 732


>gi|239944591|ref|ZP_04696528.1| ATP-dependent DNA helicase RecG [Streptomyces roseosporus NRRL
           15998]
 gi|239991053|ref|ZP_04711717.1| ATP-dependent DNA helicase RecG [Streptomyces roseosporus NRRL
           11379]
 gi|291448054|ref|ZP_06587444.1| ATP-dependent DNA helicase RecG [Streptomyces roseosporus NRRL
           15998]
 gi|291351001|gb|EFE77905.1| ATP-dependent DNA helicase RecG [Streptomyces roseosporus NRRL
           15998]
          Length = 734

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 224/746 (30%), Positives = 377/746 (50%), Gaps = 63/746 (8%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++    PL     +G   +  +++ ++          DLL ++P  + +R     ++++ 
Sbjct: 1   MSSFDEPLKKL--LGGATAKVMAEHLDL-----HTVGDLLHHYPRRYEERGKLTALADLP 53

Query: 66  EERIVTITGYISQHS--SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            +  VT+   ++     +F   + +  ++ L DG+G + L+FF             GR+ 
Sbjct: 54  LDEHVTVVAQVADARILTFNNGRGKRLEVTLTDGSGRLQLVFFGHGVHKPHKELLPGRQA 113

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNF---------PLIEAVYSLPTGLSVDLFKKI 174
              GK+     ++ + HP Y   ++ D +            +  +Y     L      K 
Sbjct: 114 MFAGKVSVFNRKMQLAHPTYQLLDASDADEATEAVDAFAGRLLPIYPACKQLDSWRIAKA 173

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           +   L       + +   L + + F  + EA   +H P+   D E    A+ RL +DE  
Sbjct: 174 VDAVLPSAQDAVDPLPASLREGRGFTPLPEALLKVHRPQTKADIE---DAKARLKWDEAF 230

Query: 235 AGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q+AL   R    +        V   +       +PF+ T+ QE   K+I  D++ ++ 
Sbjct: 231 VLQVALARRRYADTQLPAAARRPVADGLLDAFDAKLPFTLTEGQEKVSKEIFDDLATEHP 290

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT----- 348
           M R+LQG+VGSGKT+VAL AM A V+AGGQA ++AP  +LAQQH+  I +          
Sbjct: 291 MHRLLQGEVGSGKTMVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGM 350

Query: 349 ------QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
                    V ++TG+M  A RR+AL  +  G+A I+IGTHAL +D +Q++ L LV+VDE
Sbjct: 351 LGGSEQGTKVVLLTGSMGTAARRQALLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDE 410

Query: 403 QHRFGVQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           QHRFGV+QR  L  +    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI + 
Sbjct: 411 QHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASH 470

Query: 462 IIPINR----IDEVIERLKVVLSEGKKAYWICPQI--------------------EEKKE 497
           ++P       +    ER++  +  G +AY +CP+I                    E+ ++
Sbjct: 471 VVPAKDKPHFLARAWERVREEVGNGHQAYVVCPRIGDDAEEAEGKKGKAKKKAAEEDPEK 530

Query: 498 SNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
               +V+E  + L +   +  ++ ++HGRM   +K+ VM  F  G   +L+ATTVIEVG+
Sbjct: 531 RPPLAVLEIADELRKGALAGLTVEVLHGRMHPDEKDDVMRRFAAGDVDVLVATTVIEVGV 590

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +V +A+ ++I +A+ FG++QLHQLRGRVGRG     C+L+     +  +  RLS +  T 
Sbjct: 591 NVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVSEAHEASPARARLSAVAATL 650

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           DGF ++  DL+QR+EG++LG  QSG+     +      + ++  AR++A  I+  DP+L 
Sbjct: 651 DGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLTVIDDEEVIAAAREEAVAIVAADPELE 710

Query: 675 SVRGQSIRILLYLYQYNEAFQFIRAG 700
            +    +R +L      E  +++  G
Sbjct: 711 HLP--ELRTVLAALLDKEREEYLDKG 734


>gi|291296567|ref|YP_003507965.1| ATP-dependent DNA helicase RecG [Meiothermus ruber DSM 1279]
 gi|290471526|gb|ADD28945.1| ATP-dependent DNA helicase RecG [Meiothermus ruber DSM 1279]
          Length = 787

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 218/698 (31%), Positives = 361/698 (51%), Gaps = 26/698 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
              P+     +G      L+++            DLL ++P  + DR     I E+ +  
Sbjct: 108 FDTPVEALN-LGPGGRKKLAEL------GIRALRDLLHHYPRRYEDRRTLQSIREVEDGA 160

Query: 69  IVTITGYISQHSSFQLQKR--RPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITV 125
             T+ G +      +  ++  +  ++   D  G + T ++F +    +     EG  + +
Sbjct: 161 KATVVGKVLSRELVKTPRKGLQLVQVRFMDAWGWKFTGVWFNQ--PWVLKQMPEGASLVL 218

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           +G+++K      ++  ++     + ++   I  VY    G+     ++    AL     +
Sbjct: 219 SGRVQKRGGVTSLMVEYFEDEGGESLSTGRIVPVYPAKEGIGQAFLRRAAWRALEAFQTI 278

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
           P+ +E   L++ S   +  A    H P   +  E      +RL +DE L  ++ + ++  
Sbjct: 279 PDPLEP-YLKQASLMPLDRALRQAHFPSSEEQLEQA---LQRLKFDEFLLLELKV-MIES 333

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
                +G    V  ++ ++    +PF+ T +QE  + +IL DM  + +M R++QGDVGSG
Sbjct: 334 GGSALLGRVFRVTPEMLERFRAALPFTLTGAQERVLSEILADMQSERQMARLVQGDVGSG 393

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT VA  A+  A + G Q  +MAP  ILA+QH+E + +Y     + V+++ G+M    +R
Sbjct: 394 KTAVAAAALFVAAQNGAQGALMAPTEILAKQHFENLTRYLYPLGVSVDLLVGSMSNGEKR 453

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
             LER+  GQ  +++GTHAL QD + ++ L L ++DE+HRFGV QR +L  +   P VL+
Sbjct: 454 SVLERLKSGQTQVVVGTHALIQDGVAFHDLGLAVIDEEHRFGVMQRRRLLGQR--PDVLV 511

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPR+L LT  GD+++S+I E P GR P++T I+      +     +  + +G + 
Sbjct: 512 MSATPIPRSLALTLYGDLEVSQIDELPPGRTPVRTKILTQKTRTQAYAFARQEIKKGHQV 571

Query: 486 YWICPQIE--EKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + + P IE  E + +   +   R     E       I ++HG+M   +K++VM+ FK G 
Sbjct: 572 FVVTPMIEEGESEATAELAAATRLREELEILLPDVRIDLLHGKMKAEEKDAVMERFKQGA 631

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             LL++TTVIEVG+D+  A+++IIENAE FGLAQLHQLRGRVGRG   S C+L+     S
Sbjct: 632 FDLLVSTTVIEVGVDIPQATVMIIENAERFGLAQLHQLRGRVGRGGLESYCVLIAG-ETS 690

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           K +  RL V++ + DGF IAE+DL+ R  GE+ G +QSGMP   +       +++E +R 
Sbjct: 691 KRTLERLRVIEESTDGFYIAEQDLRLRGPGELRGTRQSGMPDLRLGDLASDQAIIEQSRA 750

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
            AK IL  DP L       ++  L      EA  F   
Sbjct: 751 LAKAILEADPYLEQPEHALLKRELQA--RAEAIGFREV 786


>gi|297565888|ref|YP_003684860.1| ATP-dependent DNA helicase RecG [Meiothermus silvanus DSM 9946]
 gi|296850337|gb|ADH63352.1| ATP-dependent DNA helicase RecG [Meiothermus silvanus DSM 9946]
          Length = 903

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 223/703 (31%), Positives = 369/703 (52%), Gaps = 31/703 (4%)

Query: 9   LFAPLSTFR-GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           L + + +   G+G K                    DLL  +P  + DR     I E+ E 
Sbjct: 219 LDSSVESIALGLGGKK--------KMSELGIRTLRDLLHNYPRRYEDRRALVSIREVHEG 270

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLN--DGTG-EITLLFFYRKTEMLKNVFFEGRKIT 124
              T+ G +      +  ++    + +   D  G + T ++F +    +     EG  + 
Sbjct: 271 EKATVVGKVLTKEMVKTPRKGITLVQVRLMDAWGWKFTAVWFNQ--PWVLKSIQEGSSVI 328

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           ++GK++K  ++I ++  ++     + ++   I  VY    G+S    ++     L   P+
Sbjct: 329 ISGKVQKRGSQISLLVEYFENEEGESLSTGRIVPVYPAKEGISQAFLRRSAWRGLEAFPL 388

Query: 185 LPEWIEKDL----LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           LP+ +E  L          P +  +    H P   ++    + A ERL +DE +  ++ +
Sbjct: 389 LPDPLEPYLQADGAPSLDLPPLRWSLQQAHFPDSEENL---ARALERLKFDEYVLLELKV 445

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            +++      +G    VE ++ QK   ++PF  T++QE  + +IL DM  + +M R++QG
Sbjct: 446 -MIQSGGSGLLGRMFRVEPEMIQKFRSSLPFQLTQAQERVLGEILADMQSERQMARLVQG 504

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT VA  A+  A + G Q  +MAP  ILA+QHY  ++KY     + V+++ G+M 
Sbjct: 505 DVGSGKTAVAAAALYVAAQNGAQGALMAPTEILAKQHYANLQKYLFPLGVTVDLLVGSMS 564

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +R+ALER+      +++GTHAL Q+ +++  L L ++DE+HRFGV QR +L +    
Sbjct: 565 AGEKREALERLQSAHTDVVVGTHALIQEGVEFKDLGLAVIDEEHRFGVMQRRRLLKSR-- 622

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL+M+ATPIPR+L LT  GD+++S+I E P GR P+KT ++      +     +  ++
Sbjct: 623 PDVLVMSATPIPRSLALTLYGDLEVSQIDELPPGRTPVKTKVLTHKLRHQAYAFARQEIA 682

Query: 481 EGKKAYWICPQIEEKK---ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
           +G + + + P IEE      +  ++       L E      I ++HG+M   +K++VM+ 
Sbjct: 683 KGNQVFVVTPMIEEGDSEVTAELQAATRLAQELQELLPDVRIDLLHGKMRAEEKDAVMER 742

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+     LL++TTVIEVG+D+  A++++IENAE FGLAQLHQLRGRVGRG   + CIL+ 
Sbjct: 743 FRYRHFDLLVSTTVIEVGVDIPQATVMVIENAERFGLAQLHQLRGRVGRGGLEAYCILIA 802

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
               SK + +RL V++ + DGF IAE+DL+ R  GE+ G++QSGMP   +        ++
Sbjct: 803 G-ETSKKTMSRLRVIEESTDGFYIAEKDLELRGPGELRGVRQSGMPDLKLGDLVSDGEII 861

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           E AR  AK IL  DP L   +   ++  L      EA  F   
Sbjct: 862 ERARALAKRILESDPYLEHPKHALLKRELQA--RAEAIGFREV 902


>gi|313672957|ref|YP_004051068.1| ATP-dependent DNA helicase recg [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939713|gb|ADR18905.1| ATP-dependent DNA helicase RecG [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 756

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 219/683 (32%), Positives = 354/683 (51%), Gaps = 23/683 (3%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K    L KI            D++F+ P  +        I   S      +TG       
Sbjct: 93  KTLEQLKKI------GIETAEDIIFHFPYKY-------DILSSSSNDRCVLTGTFEDSKI 139

Query: 82  FQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
            + +  ++  + +    TG    ++F         +  +G    + GK++       +VH
Sbjct: 140 VKTKNGKKILEAVFKGDTGYFYGVWFNFNNRYPLLLLKKGENYNLYGKLQNFNGLPAIVH 199

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA-LSRLPVLPEWIEKDLLQKKSF 199
           P ++  +        I  VY LP  +  +L+  ++ +  +     + E +   L+ K  F
Sbjct: 200 PEFLSTDE----LGKIRPVYLLPENVKDNLYLSLLKKVYMEYSEHIVETLPLRLIIKYGF 255

Query: 200 PSIAEAFNIIHNPRKAKDFEWTSP-ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258
             +  +   IH P    +F+  +  +  R  Y+EL   Q+ L + +  + +  GI  +++
Sbjct: 256 LDLKNSLRYIHFPDNINEFKKYNLLSHRRFVYEELFYLQLGLFIRKNSYGEVRGIKFDID 315

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             I   +   IPF  T +Q+ A+KDI  DM    +M R+LQGDVGSGKT+VA I+   AV
Sbjct: 316 KDILLTLKPYIPFKLTDAQKKALKDIFNDMKSSKQMNRLLQGDVGSGKTVVAFISGVLAV 375

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           + G Q   ++P  ILA+QHY   KK  ++      +ITG++ Q  ++     +  G    
Sbjct: 376 KNGYQVAFISPTEILAEQHYNNFKKLFKD-DFSSCLITGSLKQKDKKYLKALVESGDISF 434

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           I GTHA+ Q+   +  L  V++DEQHRFGV QR  L +K   P +LLM+ATPIPRTL LT
Sbjct: 435 IFGTHAILQEDTIFKNLGFVVIDEQHRFGVMQRKILIEKGYTPDILLMSATPIPRTLSLT 494

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
             GD++IS I + P GRKPI T       I +V + +K  + +G  AY++ P I+E    
Sbjct: 495 FYGDLEISIIDQLPPGRKPITTKAFRQKEIGKVFDLVKEQIEKGFSAYFVYPLIDESDTL 554

Query: 499 NFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           + ++  + +  + E F   ++ I+HGRM   +K  +M+ FKN   K+L++TTVIEVG+DV
Sbjct: 555 DLKAATQAYEQVAEFFGEDNVGILHGRMKAEEKNYLMNRFKNREIKILVSTTVIEVGVDV 614

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
             A++++IENAE FGL+QLHQLRGRVGRG + S C L+Y   +S++   R+  + N  DG
Sbjct: 615 PHATVMVIENAERFGLSQLHQLRGRVGRGGDQSFCYLVYSDKISEDGLKRIKAMINYNDG 674

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           F ++E DL+ R  G+  G +QSG+P    +       +L  AR+DA  IL +DP L    
Sbjct: 675 FKLSEIDLEMRGPGDFFGTRQSGLPDLKFSNIIKDTDILLSAREDAFEILKEDPYLNKPE 734

Query: 678 GQSIRILLYLYQYNEAFQFIRAG 700
            + ++ +L  +++ +A++ +  G
Sbjct: 735 NRILKEMLK-FKWKDAYELVNIG 756


>gi|187250617|ref|YP_001875099.1| ATP-dependent DNA helicase RecG [Elusimicrobium minutum Pei191]
 gi|186970777|gb|ACC97762.1| ATP-dependent DNA helicase RecG [Elusimicrobium minutum Pei191]
          Length = 691

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 235/702 (33%), Positives = 362/702 (51%), Gaps = 31/702 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +   +GVG   +    ++            D+L Y+P ++ DR     ++E   + +V  
Sbjct: 3   IKFLKGVGPARAAMFERL------GINTVSDILRYYPRTYQDRRPGV-LNEFCSQGLVVF 55

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFF----YRKTEM-----LKNVFFEGRK 122
            G +++  S   +    +K  L D  G  I   +F    + K        LK  F  G  
Sbjct: 56  LGRVARTQSIPAKSVHIFKAFLEDDKGNNIECTWFKKRTFFKARFDPMGSLKKDFKMGVW 115

Query: 123 ITVTGKIKKLKNRII--MVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           + V GK +  ++ I   +    Y   + Q+  ++   +  VYSL  GL+   F+  +  A
Sbjct: 116 VWVIGKREDKESFISNKITVEEYYSADKQESLIHVNRLTPVYSLTQGLTGKFFRTAVHFA 175

Query: 179 LS-RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   L    E +   L++K+S     +A   IH P    + +     R+RL Y+E L   
Sbjct: 176 LEKYLFEEHESLPVSLVKKRSLLGAKQALKAIHFPSNTPELDAA---RKRLVYEEFLLLT 232

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            A  + ++Q   +     +++  +      N+ F  T +Q+  I +I +DM     M R+
Sbjct: 233 SAWGIKKQQKTVQKNYTYHIKTNLLTPFKNNLGFELTHAQKKVINEIFKDMQSTLPMTRL 292

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT VAL AM  AVE   QA +MAP  ILA+QH+  I  + +   +   ++T 
Sbjct: 293 LQGDVGSGKTTVALSAMLLAVENKFQAALMAPTEILAEQHFITITNFLKGLDVKTALLTS 352

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++    + K L  +A G+  I++GTH++ +D++ +  L + +VDEQHRFGV+QR +L  K
Sbjct: 353 SVKGKTKEKLLADLAEGKIDILVGTHSIIEDNVVFKNLKMTVVDEQHRFGVEQRTRLRNK 412

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
           A    +L MTATPIPRTL L   GD+++S ITE P GRKPI T  I      E  ++ K 
Sbjct: 413 AKEIDMLTMTATPIPRTLALAFYGDLEVSAITELPPGRKPITTFSITEG---EAYQKAKS 469

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDS 536
            L +G++ Y + P IEE ++   ++V E    +   F    + ++HG+M   +KE  M  
Sbjct: 470 ELEKGRQVYIVYPLIEESEKLTVKAVKEDIEKIEGVFAPYKVGMLHGQMKRAEKEKAMAD 529

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+    +L+AT VIEVGIDV +A++++I++AE FGLA LHQLRGRVGRG E S C+L+ 
Sbjct: 530 FKDKKTDVLVATPVIEVGIDVKNATVMVIQSAERFGLASLHQLRGRVGRGSEESFCLLVP 589

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           H  LS  S  R+ +L  T DGF I E D++ R  GEILG +QSG  +F          +L
Sbjct: 590 H-NLSTVSKERIDILCQTTDGFKIGERDMQLRGPGEILGTRQSGDFEFKAGDIFKDQEVL 648

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
           + A +D   +LTQDP L        +  L +  Y + +  I 
Sbjct: 649 KWAIEDRDELLTQDPKLILPEHALFKERL-IDLYQKHWHLID 689


>gi|17232281|ref|NP_488829.1| ATP-dependent DNA helicase RecG [Nostoc sp. PCC 7120]
 gi|17133926|dbj|BAB76488.1| DNA helicase [Nostoc sp. PCC 7120]
          Length = 822

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 235/698 (33%), Positives = 385/698 (55%), Gaps = 32/698 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           LS    +G + +  L+ +            DLLFY+P   ID   +  I E+     VTI
Sbjct: 129 LSDLPEIGIRKADKLAALR------LYTVRDLLFYYPRDHIDYARQVNIRELEAGETVTI 182

Query: 73  TGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVFFEGR 121
              + + + F   K +   IL   L D TG+I +  F              LK  +  G 
Sbjct: 183 VATVKKCNCFTSPKNQKLSILELILKDNTGQIKISRFSAGARFTSRAWQESLKRRYPVGS 242

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
            +   G +K  K  + + +P      +     + +    +  +YSL  G+   + ++ ++
Sbjct: 243 VLAACGLVKGTKYGLTLDNPELEVLANPGDTIESLTMGRVVPIYSLTEGVMASMVRQAVL 302

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            AL     L + + K L +K     + +A   IH P ++   +     R RL +DE    
Sbjct: 303 AALPAAVHLKDPLPKGLREKYGLMELKDAIANIHFPDESATLQVA---RRRLVFDEFFYL 359

Query: 237 QIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ LL  ++Q K      I   +GK+ +     +PF  T +Q+  + DIL D+ +   M 
Sbjct: 360 QLGLLQRQQQAKAIQTSAILAPKGKLIENFYEILPFQLTGAQQRVLNDILNDLQKSAPMN 419

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA++A+ AA+++G QA +MAP  +LA+QHY  +  +     + VE++
Sbjct: 420 RLVQGDVGSGKTVVAVVAILAAIQSGYQAALMAPTEVLAEQHYRKLVSWFNLLHLPVELL 479

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG+     RR+   ++  G+  +++GTHAL QD + + +L LV++DEQHRFGV+QR  L 
Sbjct: 480 TGSTKTVKRRQIHSQLETGELPLLVGTHALIQDPVNFQRLGLVVIDEQHRFGVKQRALLQ 539

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK   PHVL MTATPIPRTL LT  GD+++S+I E P GR+ I+T ++   +  +  + +
Sbjct: 540 QKGEQPHVLTMTATPIPRTLALTIHGDMNVSQIDELPPGRQKIQTTMLSGQQRPQAYDLI 599

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESV 533
           +  +++G++ Y + P +EE ++ + RS VE    L E       + ++HGRMS  +K+  
Sbjct: 600 RREIAQGRQTYVVLPLVEESEKLDLRSAVEEHQKLQESVFPDFQVGLLHGRMSSAEKDEA 659

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F++   ++L++TTV+EVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   S C+
Sbjct: 660 ITKFRDNETQILVSTTVVEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGAAQSYCL 719

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+     S ++  RL VL+ ++DGF I+E D++ R  GE+LG +QSG+P F +A     +
Sbjct: 720 LM-SSSRSPDAQQRLKVLEQSQDGFFISEMDMRFRGPGEVLGTRQSGVPDFTLASLVEDE 778

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILL-YLYQY 690
            +L +AR+ A+ ++  D  L   R   ++  L Y Y+ 
Sbjct: 779 EVLLLARQAAEKVIEIDASLE--RWALMKAELKYRYER 814


>gi|121609293|ref|YP_997100.1| ATP-dependent DNA helicase RecG [Verminephrobacter eiseniae EF01-2]
 gi|121553933|gb|ABM58082.1| ATP-dependent DNA helicase RecG [Verminephrobacter eiseniae EF01-2]
          Length = 750

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 224/684 (32%), Positives = 342/684 (50%), Gaps = 44/684 (6%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
             L K+         R IDL  + P  + D      ++     ++V I   +      QL
Sbjct: 62  KALQKL------GLVRDIDLALHLPLRYEDETRITALASARNGQVVQIEATVLAC-EVQL 114

Query: 85  QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
           + RR   + + D TG   L FF       K     G ++ + G++K       M+HP + 
Sbjct: 115 RPRRQLLVQVEDATGACQLRFFSFYPSHQK-TLAVGTRLRIRGEVKGGFWGRQMLHPAFR 173

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ--------- 195
               +      +  VY    GL     ++ +V AL R   L + +               
Sbjct: 174 VAGGELP--AALTPVYPSTAGLPQPYLRRAVVSALGRAD-LSDTLPPGAQPPCAHYTDED 230

Query: 196 -KKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKK- 249
            ++   S+ EA   +H+PR         + + PA +RL  +ELLA Q++    R++  + 
Sbjct: 231 GQQRLFSLREALTFLHHPRPDVALSTLQDHSHPAWQRLKAEELLAQQLSQQQSRRERARL 290

Query: 250 -----EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
                      +    + +++L  +PF  T +Q     +I  D++++  M R+LQGDVGS
Sbjct: 291 RAAVLHEQPAADGSAPLQRQLLAVLPFDLTAAQRRVGAEIAADLARERPMHRLLQGDVGS 350

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT----QIIVEIITGNMP 360
           GKT+VA +A   A++AG Q  +MAP  ILA QH+  +  + +         V  + G   
Sbjct: 351 GKTVVAALAACQAIDAGWQCALMAPTEILAGQHFAKMIGWLEPLLAARGRCVAWLVGGQK 410

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ---- 416
           +  R      +  G A +++GTHA+ Q+ +Q+  L L I+DEQHRFGV QRL L Q    
Sbjct: 411 KKERLAMRALVESGAAALVVGTHAVIQEQVQFKNLALAIIDEQHRFGVAQRLALRQKLAA 470

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH+L+M+ATPIPRTL ++   D+DIS I + P GR PI T +I  +R DEVI R+ 
Sbjct: 471 HGMEPHLLMMSATPIPRTLAMSYYADLDISVIDQLPPGRTPIVTKLIADSRRDEVIARIG 530

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMD 535
             +  G++ YW+CP IEE +  +  +       L        + ++H RM   +K++VM 
Sbjct: 531 AQVQAGRQVYWVCPLIEESEALDLSNATATHADLSAALPGVMVGLLHSRMGSAEKKAVMA 590

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +    +L++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LL
Sbjct: 591 QFSDARMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLL 650

Query: 596 YHPPLS----KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           Y    S    +++  RL  +  T DGF IA  DL+ R  GE LG +QSG      A    
Sbjct: 651 YATNDSGRVGQSAKERLRAMVETSDGFEIARRDLEIRGPGEFLGARQSGDALLRFADLAT 710

Query: 652 HDSLLEIARKDAKHILTQDPDLTS 675
              LLE AR+ A  +L + P L +
Sbjct: 711 DGHLLEWARELAPVMLDRHPQLAA 734


>gi|225848441|ref|YP_002728604.1| ATP-dependent DNA helicase RecG [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644626|gb|ACN99676.1| ATP-dependent DNA helicase RecG [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 801

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 224/682 (32%), Positives = 381/682 (55%), Gaps = 35/682 (5%)

Query: 45  LFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLL 104
           L+  P  + DR    KI ++ +    T    +         K +  +++L       + L
Sbjct: 127 LYNFPEKYEDRR-VKKILKVKDGETGTFYAQVEDIKKVNRGKLK-VEVILRQDNVLFSAL 184

Query: 105 FFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL-- 162
           FFY K   L   F +GR + + GK+   K    ++ P       ++     I  VYSL  
Sbjct: 185 FFYDK-PYLYTYFRKGRTVKLFGKVSVYKKNYSLIQPD--LLEEKEDPIDTIAPVYSLRG 241

Query: 163 -----PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
                 TG +++  ++ + + + +   + ++I   +L+K +FP +++A   IH+P +  D
Sbjct: 242 DSSIKTTGQTINHLRRGMFKIVEKFSDVKDYIPNFILEKYNFPPLSKALKFIHHPDENTD 301

Query: 218 FE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            +    + +  ++RL +DEL   Q+A    +   ++     I V+    Q++ +N+PF  
Sbjct: 302 IDELNNFQNIHQKRLIFDELFLLQLAQKYRKALLQRNPSYNIKVKEDFLQEVEKNLPFQL 361

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q+  IK+IL D+ ++  M R++ GDVGSGKT+VA I+  A      Q+ +MAP  IL
Sbjct: 362 TNAQKRTIKEILSDLEKEVPMNRMVLGDVGSGKTVVAAISSLAVALNNYQSAVMAPTEIL 421

Query: 334 AQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           AQQHY   K + +       + ++TG++    ++K  + +  G   ++IGTHAL ++ ++
Sbjct: 422 AQQHYNNFKNFLKPYLKDYEIALLTGSLSSTEKKKIYKAVESGIVKVVIGTHALLEEKLK 481

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +  L LV+VDEQHRFGV+QR  L +++   PHV++MTATPIPRTL L   GD+DISK+ E
Sbjct: 482 FKDLALVVVDEQHRFGVEQRKSLIERSEKKPHVMVMTATPIPRTLALAYYGDLDISKLDE 541

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P GRKP+KTVI+     D++   +K  L +G++ + + P I+E ++++ +S  E F   
Sbjct: 542 LPKGRKPVKTVILFEKERDKLYSVIKQELEKGRQVFVVYPLIQESEKTDLKSAEEGFKHY 601

Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            E F    + ++HG+M   +K+ +M  FK G   +L++TTVIEVG+D+ +A++++IE A 
Sbjct: 602 QEAFPDYKVVLLHGKMKQEEKDRIMQEFKEGKAHILVSTTVIEVGVDIPNATVMVIEEAH 661

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN------------SYTRLSVLKNTEDG 617
            FGL+Q+HQLRGR+GRG+    C L+    LS+             +  RL +L  T +G
Sbjct: 662 RFGLSQIHQLRGRIGRGQYEGYCFLMAPDELSQPQSDSSKEKSRLKALERLKILVKTNNG 721

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           F IAE+DL+ R  G+I G++QSG   F++A  +  + LLEIA K+A+ ++ QDP L+  +
Sbjct: 722 FEIAEKDLELRGAGDIAGVRQSGESGFILADLKRDEELLEIATKEAQEMINQDPTLS--K 779

Query: 678 GQSIRILLYLYQYNEAFQFIRA 699
            + ++ ++Y   Y + F  +  
Sbjct: 780 YKELKDVVYKM-YADKFDLVSI 800


>gi|312897745|ref|ZP_07757161.1| ATP-dependent DNA helicase RecG [Megasphaera micronuciformis F0359]
 gi|310621129|gb|EFQ04673.1| ATP-dependent DNA helicase RecG [Megasphaera micronuciformis F0359]
          Length = 677

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 228/676 (33%), Positives = 362/676 (53%), Gaps = 22/676 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS--EERIV 70
           +   +G+G   +   +++            DL+ Y P ++ DR     I +IS  ++R V
Sbjct: 5   IKDIKGIGPARAKLFARMK------LETASDLVQYFPRAYEDRSKIRAIKDISNNDDRPV 58

Query: 71  TITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            + G +      + ++     K+L++DGTG + L++F +     K +F  G+ +   GK 
Sbjct: 59  LVNGTVKSVVELRPRRGMTILKVLISDGTGGLELVWFNQ--PFKKRLFKVGKDVHAFGKT 116

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
           ++   R+ M  P              +  VY+L  GL     ++ +    +    + + I
Sbjct: 117 ERAYGRLQMNSPE---AEPGPAVPGGLVPVYALTEGLRQADVRRAVAALFADEASVKDLI 173

Query: 190 EKDL-LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
              L L  +      E +  +H P     FE    AR+RLA++EL A Q  LLL R+  +
Sbjct: 174 PPCLSLDIQGTEVSVETYKALHFP---ASFEALERARKRLAFEELFALQAGLLLKRRAEQ 230

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
               +     GK+ + +L N+PF  TK Q  A  DI+ D   +  M R++QGDVGSGKT+
Sbjct: 231 SGQAVKFGPNGKLIKGLLNNLPFLLTKGQTEAFADIVNDTETQVPMQRLVQGDVGSGKTV 290

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA +A+A AVE G Q  +MAP GILA QHYE + +  ++  + + ++TG      R   L
Sbjct: 291 VAALALAKAVENGYQGALMAPTGILAIQHYEELNRLFKDLPVRIALLTGRTTGKERELIL 350

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           ++ AH +  I++GTHAL QD + +  L LV+ DEQHRFGV+QR  L  K    H L +TA
Sbjct: 351 QKAAHREVDILVGTHALIQDDVIFSDLALVVTDEQHRFGVRQRAALRNKGKDVHTLFLTA 410

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRT+ L+  GD+D+S + E P GRKP+KT  +       +   ++  ++ G + Y +
Sbjct: 411 TPIPRTMALSVYGDLDVSTMRELPPGRKPVKTYAVTEGMRSRIYAFMRKEIAAGHQCYVV 470

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP +EE   ++ ++    + SL     +  S  ++HGRMS  +K+ VM+ F+ G  KLL+
Sbjct: 471 CPLVEESASADLQAATALYESLKSTDFADISCGLVHGRMSGKEKDEVMERFQRGDIKLLV 530

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT+VIEVG++V +A+I+ ++ AE FGLAQLHQLRGRVGRG   + CILL     ++ +  
Sbjct: 531 ATSVIEVGVNVPNATIMCVDGAERFGLAQLHQLRGRVGRGAAQAYCILL-AKSGNEETRQ 589

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL  ++   DGF ++E+DL  R  G++ G  Q G+P    A+      LL  AR  A+  
Sbjct: 590 RLKWMETIHDGFSLSEKDLLLRGAGQLFGSMQHGLPDLKAARIIEDADLLIPARDGAQAY 649

Query: 667 LTQDPDLTSVRGQSIR 682
           L + P    +  ++++
Sbjct: 650 L-RLPGTEKIVKEALK 664


>gi|256846084|ref|ZP_05551542.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_36A2]
 gi|256719643|gb|EEU33198.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_36A2]
          Length = 689

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 226/650 (34%), Positives = 361/650 (55%), Gaps = 14/650 (2%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ-K 86
            ++ N  +       DL++Y P ++ DR    KI E+     V +   +    +  ++  
Sbjct: 23  KQLSNLKSLGINTVYDLVYYFPRAYDDRTNIKKIGELKFNEYVVLKATVMSAVNLTVRSG 82

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IF 145
           ++  K ++ DGTG + +L+F      +K     G +    G+ KK      +++P Y +F
Sbjct: 83  KKIVKAMVTDGTGIMEILWF--GMPYIKKSLKIGEEYLFIGQTKKS-TVFQLINPEYKLF 139

Query: 146 HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAE 204
              Q V+   I  +YS    ++ +  +K++ + L + L    E I K+L+++        
Sbjct: 140 SGQQKVSKNEILPIYSSNKNITQNSLRKLVEKFLVNFLNYFEENIPKELIKEYKIMERKS 199

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG--KIA 262
           A   IH P   K+ E     + R A +ELL  ++ +L  R   +        VEG  +  
Sbjct: 200 AIKNIHYPISMKEIEEA---KRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKV 256

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++ L  + F+ T +Q+  IK+I  ++S    + R++QGDVGSGKT+VA++ +    E G 
Sbjct: 257 KEFLSQLTFNLTNAQKKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGY 316

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  +MAP  ILA QHY  IK+  +   + VE++T ++    + + LE IA+G+  I+IGT
Sbjct: 317 QGALMAPTEILANQHYLGIKERLEKIGLRVELLTSSIKGKKKNEILEGIANGEIDIVIGT 376

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H+L +D++ + KL L+++DEQHRFGV QR KL +K    ++L+M+ATPIPR+L L+  GD
Sbjct: 377 HSLIEDNVVFKKLGLIVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGD 436

Query: 443 IDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           +D+S I E P GR PIKT  I  +  ++++   +   +++G +AY++ P IE   +   +
Sbjct: 437 LDLSIIDELPPGRTPIKTKWIANDEDLEKMYNFIYKKVNDGNQAYFVAPLIETSDKMALK 496

Query: 502 SVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           SV +    +   F    I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  +
Sbjct: 497 SVDKVSEEIERKFSNKKIGIIHGKMKAKEKDDVMLKFKNKEYDILIATTVIEVGIDVPAS 556

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           +I+ I NAE FGL+ LHQLRGRVGRG + S C L+ +  +++NS  RLS+++ TEDGF I
Sbjct: 557 TIMTIYNAERFGLSALHQLRGRVGRGSKQSYCFLISN-SITENSKQRLSIMEETEDGFRI 615

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           AEEDLK R  GEI G++QSG               +++ R +    L + 
Sbjct: 616 AEEDLKLRNSGEIFGLRQSGFSDLKFIDIIYDVKTIKLVRDECIKYLKEH 665


>gi|302380535|ref|ZP_07269000.1| ATP-dependent DNA helicase RecG [Finegoldia magna ACS-171-V-Col3]
 gi|302311478|gb|EFK93494.1| ATP-dependent DNA helicase RecG [Finegoldia magna ACS-171-V-Col3]
          Length = 678

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 218/663 (32%), Positives = 348/663 (52%), Gaps = 20/663 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           LS  +G+GKK    L+ +            DLL Y P  + +R     I +  +E    I
Sbjct: 3   LSEIKGIGKKKLEVLNSM------GINNINDLLNYFPYRYENRSIIKNIIDTRDEENCVI 56

Query: 73  TGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
                     +  +R       +  D T +I++ +F +    ++N         + GKI+
Sbjct: 57  KVKFISKPITKYLRRNLNLTTAIAFDDTSKISVSWFNQ--PFIRNQILPNTTYYLYGKIQ 114

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189
           +++N+  +  P  I   +      +I  +Y +  G++ +   K +  A+      +   I
Sbjct: 115 RVQNQFKISSP--ILSKTFGGKLGIIYPIYKVKKGITNNDMIKFVDFAIKHCIDEIKNVI 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              +++     +   A   IH P    D+     AR  L  +E++  Q+A+  M+    +
Sbjct: 173 PYSMIKNYDIENKRNAIKNIHKP---VDYAQFKRARTALVLEEVIIMQLAMKSMKTSLNQ 229

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           +  I    + +     + ++ F  TK Q  AIKDI  DM+ + RM R++QGDVGSGKT+V
Sbjct: 230 QNYIKFQSD-ESINIFINSLKFELTKGQLEAIKDIEMDMTSEKRMNRLVQGDVGSGKTIV 288

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A  A+  +  +G Q+  MAP  ILA QHYE + +      I V ++  ++ ++ +   L+
Sbjct: 289 AEAAIFKSHSSGYQSAFMAPTDILATQHYESLSEDFSKFGIKVCLLKSDLTKSEKDLVLK 348

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            I  G   +I+GTHA+ QD +++ +L LVI DEQHRFGV QR K++ K   P VL+MTAT
Sbjct: 349 GIKSGYFDVIVGTHAIIQDFVEFKRLGLVITDEQHRFGVGQRKKISDKGQNPDVLVMTAT 408

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L+  GD+DIS I E P GRK I+T  +  +    +   ++  +  G +AY +C
Sbjct: 409 PIPRTLALSYYGDLDISTINEMPKGRKTIETYSVGFSYEKRIAAFIRKQVDNGFQAYIVC 468

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           P IEE +     +V E +N L   + S  ++ ++HG+M   +KE  M  F +G   +L++
Sbjct: 469 PLIEESEALELENVTELYNRLTSEYFSDINVGMLHGKMKSSEKEETMKDFVDGKTNILVS 528

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG++V  A++I+I NAE FGL+QLHQLRGRVGR  + S CIL+ +   S     R
Sbjct: 529 TTVIEVGVNVRKANVIVIYNAERFGLSQLHQLRGRVGRSSDQSYCILINNAH-SDEQMER 587

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           ++++  T  GF ++++DL  R  G++LG +QSG+P   IA  E    L+E A     +I 
Sbjct: 588 MNIMVKTNSGFELSQKDLMMRGSGDLLGTRQSGIPLLNIADLEKDYDLIEKAAVITDYIY 647

Query: 668 TQD 670
           T D
Sbjct: 648 TND 650


>gi|320536875|ref|ZP_08036868.1| ATP-dependent DNA helicase RecG [Treponema phagedenis F0421]
 gi|320146258|gb|EFW37881.1| ATP-dependent DNA helicase RecG [Treponema phagedenis F0421]
          Length = 684

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 223/692 (32%), Positives = 356/692 (51%), Gaps = 40/692 (5%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR   +  +  P+S   G G      LS++            D+L   P ++ DR     
Sbjct: 1   MR---VAEIQVPVSHLPGAGAVTVTQLSRL------GVQTVGDILLLWPRTWEDRTRVDF 51

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFE 119
           +++    + + +   +     F   + R  K+++ D  G    L  F R    L+N F  
Sbjct: 52  LADYDSVQKLQVRVKVVGQEWFGFGRMRTLKLIIQDECGSFAELACFNRN--FLENAFPV 109

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  V G       ++           S +     I  VY L  GL     +K+I  AL
Sbjct: 110 GAEAVVYGSFYYKYGKLQSSAFEIEKPESAEQK---ILPVYPLTQGLGQAKLRKLIQTAL 166

Query: 180 SRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
            +    +   +  ++++K   P+  +    +H+P+  ++ E     R  L ++E    Q 
Sbjct: 167 RQYARGIDSELPAEVMEKYGLPTKQQILFFMHSPQTVQETEQA---RHALIFEEFFIFQT 223

Query: 239 ALLLMRKQFKKEIGIPINVEGKIA-------------QKILRNIPFSPTKSQESAIKDIL 285
            L     Q + ++      E + A             Q++L+ +PF+ T+ Q +   ++ 
Sbjct: 224 ELGKRSIQRRGKLPYFSETESEFASSKPRQPVLTQLQQQLLKRLPFALTEDQRTVTAEVN 283

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
           +D+     M R++QGDVGSGKTL A +A    +E GGQA  +AP  +LA+QH E   K  
Sbjct: 284 EDLEGTEPMARLIQGDVGSGKTLTAFLACLNVIEKGGQAAFLAPTELLARQHAENAAKLL 343

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +   + +  +TGN+    R   L  +A G   +++GTHALF   + Y  L L +VDEQHR
Sbjct: 344 KPLGVRLAFLTGNVKAKGRSHLLAALADGSIDLVLGTHALFSSGVSYKNLRLAVVDEQHR 403

Query: 406 FGVQQRLKLTQK-------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           FGV QR  + QK          PH L+M+ATPIPRTL L+  GD+DIS I   P GRKP+
Sbjct: 404 FGVLQRSAIIQKGVEGSKEKKPPHFLMMSATPIPRTLALSVFGDLDISVIKTMPEGRKPV 463

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            T +    + ++V   +   ++ G++AY++ P IE+ +  + +S  + +  L + F    
Sbjct: 464 ITYVASQAKAEKVYTFIGKEIAAGRQAYFVYPLIEDSESLSLKSAEQMYQYLQQGFPRHK 523

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A+IH ++ + +++ +M+ FK G   +L AT+VIEVG+DV +A+ ++IE++E FGL+ LH
Sbjct: 524 VALIHSKIPENEQKEIMEEFKAGKIHILAATSVIEVGVDVPNATCMVIEHSERFGLSALH 583

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG E S C L+Y   ++ +  TRLS++K T DGF+IAEEDLK R  G+I GI+
Sbjct: 584 QLRGRVGRGGEQSYCFLMYGKNITNDGKTRLSIMKETTDGFVIAEEDLKLRGPGDIGGIE 643

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           QSG   F +A P    +LL+ AR+ A  IL +
Sbjct: 644 QSGYLGFNLADPMRDYTLLQKARQAAFAILEK 675


>gi|237743344|ref|ZP_04573825.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 7_1]
 gi|229433123|gb|EEO43335.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 7_1]
          Length = 689

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 224/650 (34%), Positives = 357/650 (54%), Gaps = 14/650 (2%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ-K 86
            ++ N  +       DL++Y P ++ DR    KI E+     V +   +    +  ++  
Sbjct: 23  KQLSNLKSLGINTIYDLIYYFPRAYDDRTNIKKIGELKFNEYVVLKATVMSAVNLTVRSG 82

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IF 145
           ++  K ++ DGTG + +L+F      +K     G +    G+ KK      +++P Y +F
Sbjct: 83  KKIVKAMVTDGTGIMEILWF--GMPYIKKSLKIGEEYLFIGQTKKS-AVFQLINPEYKLF 139

Query: 146 HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAE 204
              Q V+   I  +YS    ++ +  +K++ + L + L    E I  +L+++        
Sbjct: 140 SVQQKVSKNEILPIYSSNKNITQNSLRKLVEKFLVNFLNYFKENIPDELIKEYKIMERKS 199

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG--KIA 262
           A   IH P   K+ E     + R A +ELL  ++ +L  R   +        VEG  +  
Sbjct: 200 AIKNIHYPVSMKEIEEA---KRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKV 256

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +  L  + F+ T +Q+  IK+I  ++S    + R++QGDVGSGKT+VA++ +    E G 
Sbjct: 257 KNFLSQLTFNLTNAQKKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGY 316

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  +MAP  ILA QHY  IK+  +   + VE++T ++    + + LE +A+G   I+IGT
Sbjct: 317 QGALMAPTEILANQHYLGIKERLEKIGLRVELLTSSIKGKKKNEILEGMANGDIDIVIGT 376

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H+L +D + + KL L+++DEQHRFGV QR KL +K    ++L+M+ATPIPR+L L+  GD
Sbjct: 377 HSLIEDDVIFKKLGLIVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGD 436

Query: 443 IDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           +D+S I E P GR PIKT  I  +  ++++ + +   ++ G +AY++ P IE   +   +
Sbjct: 437 LDLSIIDELPPGRTPIKTKWIANDEDLEKMYDFIYKKVNAGNQAYFVAPLIETSDKMALK 496

Query: 502 SVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           SV +    +   F    I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  +
Sbjct: 497 SVDKVSEEIERKFSNKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPAS 556

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           +I+ I NAE FGL+ LHQLRGRVGRG + S C L+ +  +++NS  RLS+++ TEDGF I
Sbjct: 557 TIMTIYNAERFGLSALHQLRGRVGRGSKQSYCFLISN-SITENSKQRLSIMEETEDGFRI 615

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           AEEDLK R  GEI G++QSG               +++ R +    L + 
Sbjct: 616 AEEDLKLRNSGEIFGLRQSGFSDLKFIDIIYDVKTIKLVRDECIKYLKEH 665


>gi|75908279|ref|YP_322575.1| ATP-dependent DNA helicase RecG [Anabaena variabilis ATCC 29413]
 gi|75702004|gb|ABA21680.1| ATP-dependent DNA helicase RecG [Anabaena variabilis ATCC 29413]
          Length = 822

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 230/681 (33%), Positives = 378/681 (55%), Gaps = 29/681 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           LS    +G + +  L+ +            DLLFY+P   ID   +  I E+     VTI
Sbjct: 129 LSDLPEIGIRKADKLAALR------LYTVRDLLFYYPRDHIDYARQVNIRELEAGETVTI 182

Query: 73  TGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVFFEGR 121
              + + + F   K +   IL   L D TG+I +  F              LK  +  G 
Sbjct: 183 VATVKKCNCFTSPKNQKLSILELILKDNTGQIKISRFSAGARFTSRAWQESLKRRYPVGS 242

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
            +   G +K  K  + + +P      +     + +    +  +YSL  G+   + ++ ++
Sbjct: 243 VLAACGLVKGTKYGLTLDNPELEVLANPGDTIESLTMGRVVPIYSLTEGVMASMVRQAVL 302

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            AL     L + + K L +K     + +A   IH P ++   +     R RL +DE    
Sbjct: 303 AALPAAVHLKDPLPKGLREKYGLMELKDAIANIHFPDESATLQVA---RRRLVFDEFFYL 359

Query: 237 QIALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ LL  ++Q K      I   +G++ +     +PF  T +Q+  + DIL D+ +   M 
Sbjct: 360 QLGLLQRQQQAKAIQTSAILAPKGQLIENFYEILPFQLTGAQQRVLNDILNDLQKSTPMN 419

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VA++A+ AA+++G QA +MAP  +LA+QHY  +  +     + VE++
Sbjct: 420 RLVQGDVGSGKTVVAVVAILAAIQSGYQAALMAPTEVLAEQHYRKLVSWFNLLHLPVELL 479

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG+     RR+   ++  G+  +++GTHAL QD + + +L LV++DEQHRFGV+QR  L 
Sbjct: 480 TGSTKTVKRRQIHSQLETGELPLLVGTHALIQDPVNFQRLGLVVIDEQHRFGVKQRALLQ 539

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           QK   PHVL MTATPIPRTL LT  GD+++S+I E P GR+ I+T ++   +  +  + +
Sbjct: 540 QKGEQPHVLTMTATPIPRTLALTIHGDMNVSQIDELPPGRQKIQTTMLSGQQRPQAYDLI 599

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESV 533
           +  +++G++ Y + P +EE ++ + RS VE    L E       + ++HGRMS  +K+  
Sbjct: 600 RREIAQGRQTYVVLPLVEESEKLDLRSAVEEHQKLQESVFPEFQVGLLHGRMSSAEKDEA 659

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F++   ++L++TTV+EVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   S C+
Sbjct: 660 ITKFRDNETQILVSTTVVEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGAAQSYCL 719

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L+     S ++  RL VL+ ++DGF I+E D++ R  GE+LG +QSG+P F +A     +
Sbjct: 720 LM-SSSRSPDAQQRLKVLEQSQDGFFISEMDMRFRGPGEVLGTRQSGVPDFTLASLVEDE 778

Query: 654 SLLEIARKDAKHILTQDPDLT 674
            +L +AR+ A+ ++  D  L 
Sbjct: 779 EVLLLARQAAEKVIEIDVSLE 799


>gi|241766968|ref|ZP_04764765.1| ATP-dependent DNA helicase RecG [Acidovorax delafieldii 2AN]
 gi|241362544|gb|EER58432.1| ATP-dependent DNA helicase RecG [Acidovorax delafieldii 2AN]
          Length = 768

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 236/727 (32%), Positives = 358/727 (49%), Gaps = 75/727 (10%)

Query: 20  GKKYSLF-LSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           G   +   L K+         R IDL  + P  + D      +    +  +  I   ++ 
Sbjct: 46  GASVAQKALRKL------GLVRDIDLALHLPLRYEDETRITPLRNARDGEVAQIEATVTS 99

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
               Q++ RR   + ++DGTG   L FF       K     G ++ + G++K       M
Sbjct: 100 C-EVQMRPRRQLLVQVDDGTGTCELRFFSFYPSHQK-TLAAGARLRIRGEVKGGFWGRQM 157

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----- 193
           +HP +     +      +  VY    GL     ++ +V AL R   L E +   L     
Sbjct: 158 LHPAFRVAGGELP--AALTPVYPTTAGLPQPYLRRSVVGALQRAD-LSETVPPGLEPPMG 214

Query: 194 --LQKKSFP---SIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR 244
             L K       S+ EA   +H+P          + + PA +RL  +ELLA Q++    R
Sbjct: 215 RILSKNGLQRAFSLREALTFLHHPTPDVALTTLEDHSHPAWQRLKAEELLAQQLSQQQSR 274

Query: 245 KQFKKEIGIPINVEG------KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           ++  +     +           + +++L  +PF  T +Q    ++I  D+++   M R+L
Sbjct: 275 RERDRLRAPVLQPRPRVGQALPLHEQLLAVLPFGLTAAQRRVGEEIAADLARPVPMHRLL 334

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE----FIKKYTQNTQIIVEI 354
           QGDVGSGKT+V+ +A A  ++AG Q  +MAP  ILA+QH+     +++     T   V  
Sbjct: 335 QGDVGSGKTVVSALAAAICMDAGWQCALMAPTEILAEQHFAKMIGWLEPLLAATGRRVAW 394

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           + G   +  R   L  +A G+A +++GTHA+ Q+ +Q+  L L I+DEQHRFGV QRL L
Sbjct: 395 LVGGQKKKERAAMLALVASGEAALVVGTHAVIQEQVQFRNLALAIIDEQHRFGVAQRLAL 454

Query: 415 TQK--------------------------------ATAPHVLLMTATPIPRTLVLTSLGD 442
            +K                                A  PH+L+M+ATPIPRTL ++   D
Sbjct: 455 RKKLAEGIATGPAQGDAAPSGGRDQRRGGAWGPSTAMEPHMLMMSATPIPRTLAMSYYAD 514

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +D+S I E P GR PI T +I  +R  EVIER+   ++ G++ YW+CP IEE +  +  +
Sbjct: 515 LDVSVIDELPPGRTPIVTKLIADSRKYEVIERIGAQVAAGRQVYWVCPLIEESEALDLSN 574

Query: 503 VVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
                  L E      + ++H RM   +K++VM  F +G   +L++TTVIEVG+DV +AS
Sbjct: 575 ATATRVDLSEALPGCMVGLLHSRMPTAEKKAVMALFTSGQMGVLVSTTVIEVGVDVPNAS 634

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS----KNSYTRLSVLKNTEDG 617
           +++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY    S    + +  RL  +  T DG
Sbjct: 635 LMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYATNDSGRVGETAKERLRAMAETNDG 694

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           F IA  DL+ R  GE LG +QSG      A      +LLE AR  A  +L Q P L + R
Sbjct: 695 FEIARRDLEIRGPGEFLGARQSGDALLRFADLATDTALLEWARATAPRMLDQFPAL-AER 753

Query: 678 GQSIRIL 684
             + R L
Sbjct: 754 HVA-RWL 759


>gi|331004261|ref|ZP_08327739.1| ATP-dependent DNA helicase RecG [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330411426|gb|EGG90838.1| ATP-dependent DNA helicase RecG [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 683

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 217/666 (32%), Positives = 361/666 (54%), Gaps = 20/666 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            +   +GVG+K + +L K+      +      LL ++P  +++     KISE++++    
Sbjct: 5   SVKNIKGVGEKTAQYLEKL------DIRTIKGLLKHYPVRYLEYKAPTKISEVNKDEEAV 58

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I   I ++ SF  Q R+     + D    I ++++   +  L+    +G      GK  K
Sbjct: 59  IKATIVKNISFTGQNRKISTTKITDYIDVIDVIWYN--SPYLRATIKQGESYVFVGKFSK 116

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPEWI 189
            +++  + HP     +  +      + VY+L  G++ +  +K+I   L  +      E++
Sbjct: 117 -RSKSTLEHPIIYTLDEYEKKIGSFKPVYALTAGINNNAMEKLIKSGLEYIDEDDFAEYL 175

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR-KQFK 248
              +L+K S  S   +   IHNP        +   ++RLA+D+       + L++ K+ K
Sbjct: 176 PAFVLEKFSLESRLNSIKNIHNPLNTSCLFES---KKRLAFDDFFRFLYGVKLLKNKRLK 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +    +    +  ++I   +PF  T SQ+  + +IL DMS      R++QGDVGSGKT+
Sbjct: 233 VKSKNIVAKSTEYLEEIKSVLPFKLTSSQDRVVDEILDDMSSGIVTNRLVQGDVGSGKTV 292

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN--TQIIVEIITGNMPQAHRRK 366
           +ALI++  AV++G Q V+M P  +LA+QH++ +  +     +   + I+TG+M +     
Sbjct: 293 IALISLYMAVKSGFQGVVMVPTEVLAKQHFKSMSGFLNRLKSPPRIGILTGSMTKKEHLL 352

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E+I  G+  I+IGTHAL  +++++  L LV+ DEQHRFGV+QR  L+ K    HVL+M
Sbjct: 353 MYEKIESGEIDILIGTHALLVENVKFKNLGLVVTDEQHRFGVRQRTTLSDKGENVHVLVM 412

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL +   GD+DIS I  KP GR P+K  +I  N  ++    + + + +G +AY
Sbjct: 413 SATPIPRTLAIILYGDLDISTIESKPVGRLPVKNAVITENDREKAYRHILLEIKKGHQAY 472

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ICP +EE +     +V++    + + F     + ++HGRM   +K+ +M  + N    +
Sbjct: 473 IICPMVEESENIEAENVLDYGKKIADKFSQNCKVEVLHGRMQQKEKDDIMSRYVNKEIDI 532

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG+DV +A++I++ENAE FGLA LHQLRGRVGR E  S  I +     S  +
Sbjct: 533 LVSTTVIEVGVDVPNATVIMVENAERFGLATLHQLRGRVGRSELQSYAIFVRTSS-SNIA 591

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL ++ N+ DGF IA  DL  R  GE+ G+ QSG P F IA     + + E+A++   
Sbjct: 592 KKRLEIIGNSNDGFYIASRDLVLRGPGELFGLAQSGEPDFGIADIYNDNDIFEMAKEAVD 651

Query: 665 HILTQD 670
            I  +D
Sbjct: 652 MIQCED 657


>gi|182435707|ref|YP_001823426.1| ATP-dependent DNA helicase RecG [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178464223|dbj|BAG18743.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 734

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/737 (30%), Positives = 373/737 (50%), Gaps = 60/737 (8%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL     +G   +  +++ ++          DLL ++P  + +R     ++++  +  VT
Sbjct: 10  PLKKL--LGGATAKVMAEHLDL-----HTVGDLLHHYPRRYEERGRLTALADLPLDEHVT 62

Query: 72  ITGYISQHSS--FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           +   ++      F   + +  ++ L DG+G + L+FF             GR+    GK+
Sbjct: 63  VVAQVADARILMFNNGRGKRLEVTLTDGSGRLQLVFFGHGVHKPHKELLPGRQAMFAGKV 122

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNF---------PLIEAVYSLPTGLSVDLFKKIIVEALS 180
                ++ + HP Y   ++ D +            +  +Y     L      K +   L 
Sbjct: 123 SVFNRKMQLAHPTYQLLDASDADEATEAVDAFAGRLLPIYPACKQLDSWRIAKAVDAVLP 182

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
                 + +   L + + F S+ EA    H P+   D E    AR RL +DE    Q+AL
Sbjct: 183 SARDAVDPLPASLREGRGFTSLPEALLKAHRPQTKADIE---DARARLKWDEAFVLQVAL 239

Query: 241 LLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
              R    +        V   +       +PF+ T+ Q+   K+I  D++ ++ M R+LQ
Sbjct: 240 ARRRYADTQLPAAARRPVADGLLDAFDAKLPFTLTEGQQKVSKEIFDDLATEHPMHRLLQ 299

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNT 348
           G+VGSGKT+VAL AM A V+AGGQA ++AP  +LAQQH+  I +              + 
Sbjct: 300 GEVGSGKTMVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDH 359

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              V ++TG+M  A RR+AL  +  G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV
Sbjct: 360 GTKVVLLTGSMGTAARRQALLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGV 419

Query: 409 QQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           +QR  L  +    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI + ++P   
Sbjct: 420 EQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKD 479

Query: 468 ----IDEVIERLKVVLSEGKKAYWICPQI-----------------EEKKESNFRSVVER 506
               +    ER++  +  G +AY +CP+I                 E+  +    +V+E 
Sbjct: 480 KPHFLARAWERVREEVENGHQAYVVCPRIGDDAEEEKGRAKKKAAEEDPDKRPPLAVLEI 539

Query: 507 FNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            + L +   +   + ++HGRM   +K+ VM  F  G   +L+ATTVIEVG++V +A+ ++
Sbjct: 540 ADELRKGALAGLGVEVLHGRMHPDEKDDVMRRFAAGDVHVLVATTVIEVGVNVPNATAMV 599

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ FG++QLHQLRGRVGRG     C+L+     +  +  RLS +  T DGF ++  D
Sbjct: 600 IMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEAHEASPARARLSAVAATLDGFELSRID 659

Query: 625 LKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+QR+EG++LG  QSG+     +      + ++  AR++A  I+  DP+L  +    +R 
Sbjct: 660 LEQRREGDVLGQAQSGVRSSLRMLTVIDDEEVIAAAREEAVAIVAADPELEHLP--ELRT 717

Query: 684 LLYLYQYNEAFQFIRAG 700
           +L      +  +++  G
Sbjct: 718 VLAALLDKDREEYLDKG 734


>gi|294631617|ref|ZP_06710177.1| ATP-dependent DNA helicase RecG [Streptomyces sp. e14]
 gi|292834950|gb|EFF93299.1| ATP-dependent DNA helicase RecG [Streptomyces sp. e14]
          Length = 740

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 221/748 (29%), Positives = 375/748 (50%), Gaps = 62/748 (8%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P+   PL  PL +   +G   +  +++ +           DLL ++P  + +R     ++
Sbjct: 5   PALQEPLRRPLKSV--LGPATAKVMAEHL-----GLHTVGDLLHHYPRKYEERGRLTHLA 57

Query: 63  EISEERIVTITGYISQ-------HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKN 115
           ++  +  VT+   ++         S     K +  ++ + DG+G + L+FF         
Sbjct: 58  DLPMDEHVTVVAQVADARLHTFASSRAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHK 117

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-----FPLIEAVYSLPTGLSVDL 170
               G +    GK+     ++ + HP Y      D          +  +Y     +    
Sbjct: 118 DLLPGTRAMFAGKVSVFNRKLQLAHPAYELLQGDDGESVESFAGALIPLYPATAKMESWK 177

Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
             K +   L       + + + L   +    + EA   IH P    D    + A+ RL +
Sbjct: 178 IAKAVQTVLPDARDAVDPLPEALRAGRGLLPLPEALLKIHRPHTKADI---ADAQARLKW 234

Query: 231 DELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
           DE    Q+AL   R    +   +P +     +       +PF+ T+ Q    ++I  D++
Sbjct: 235 DEAFVLQVALARRRHADAQLPAVPRVPRPDGLLAAFDDRLPFTLTEGQRKVSREIFTDLA 294

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY----- 344
             + M R+LQG+VGSGKT+VAL AM A V+AGGQA ++AP  +LAQQH+  I +      
Sbjct: 295 ADHPMHRLLQGEVGSGKTMVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSITEMMGELA 354

Query: 345 ------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                        V ++TG+M  A RR+AL  +  G+A I+IGTHAL +D +Q++ L LV
Sbjct: 355 EGGMLGGSEHATKVVLLTGSMGAAARRQALLDLVTGEAGIVIGTHALIEDKVQFHDLGLV 414

Query: 399 IVDEQHRFGVQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +VDEQHRFGV+QR  L  +    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR P
Sbjct: 415 VVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSP 474

Query: 458 IKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV--------- 504
           I + ++P       +    ER++  +++G +AY +CP+I ++++   ++           
Sbjct: 475 IASHVVPAADKPHFLARAWERVREEVAKGHQAYVVCPRIGDEEDDPKKAAKKSPDADATA 534

Query: 505 ---------ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                    +  + L +       + ++HGRM+  DK++VM  F  G   +L+ATTVIEV
Sbjct: 535 DRRPPLAVLDVADQLAKGPLQGLRVEVLHGRMAPDDKDAVMRRFAAGDTDVLVATTVIEV 594

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G++V +A++++I +A+ FG++QLHQLRGRVGRG     C+L+   P +  +  RL+ +  
Sbjct: 595 GVNVPNATVMVITDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEASAARQRLNAVAA 654

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           T DGF ++  DL+QR+EG++LG  QSG      +      + ++  AR++A  ++  DP 
Sbjct: 655 TLDGFELSRIDLEQRREGDVLGQAQSGARSSLRVLAVIEDEEIIAEAREEATAVVAADPG 714

Query: 673 LTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           LT + G  +R  L     ++  Q++  G
Sbjct: 715 LTGLPG--LRTALDALLDDDKEQYLEKG 740


>gi|87307710|ref|ZP_01089853.1| ATP-dependent DNA helicase RecG [Blastopirellula marina DSM 3645]
 gi|87289324|gb|EAQ81215.1| ATP-dependent DNA helicase RecG [Blastopirellula marina DSM 3645]
          Length = 697

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 234/688 (34%), Positives = 378/688 (54%), Gaps = 18/688 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+   +GVG + +  L+K+      N    +DLLF+ P  + D      I+++ 
Sbjct: 10  LERLRTPVQFLKGVGPQRAEKLAKL------NIFTALDLLFFFPRDYQDVRDVIPIAQLV 63

Query: 66  EERIVTITGYISQHSSFQL-QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           E+ I ++ G + + S       R    +L+      +  ++F +    L+  F EGR++ 
Sbjct: 64  EDEIASVIGTVEEISLRNTAPGRSVLGVLIRSDEQYLRAIWFNQ--PFLRRRFSEGRRVL 121

Query: 125 VTGKIKKLKNRIIMVHP-HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL- 182
           ++GK      R  M HP   +  + Q+     I  VYSL  G+     ++++  A+    
Sbjct: 122 MSGKPTLNGLRWEMAHPIAEVLEDEQEEIGGKILPVYSLTEGIRQGAMRRLVHHAVEDYR 181

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             + E + +  L +     + +A   IH P    D +  + A+ R  Y ELL  Q+AL +
Sbjct: 182 KEIEEVLPQTFLDEHGLMPVHDAILQIHAP---DDHDARAAAQRRFIYQELLVLQLALAV 238

Query: 243 MRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            R Q       + I ++G+I ++I R IPF  T++Q  A+ ++ +D++    M R+LQGD
Sbjct: 239 RRYQLTSNRHSMSIPIDGRIDERIRRLIPFELTEAQNQAVAEVTRDLALDVPMNRLLQGD 298

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VAL AM AAV AG QA +MAP  +LA+QH   + K     ++ V ++TG + +
Sbjct: 299 VGSGKTIVALYAMLAAVAAGAQAALMAPTEVLARQHVRTLGKLLAKAKVNVGLLTGTLTE 358

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             RR+ L ++A G+  +++GT A+    I+++KL LV++DEQH+FGV+QR +L      P
Sbjct: 359 KQRRELLAQLAAGEVQLLVGTQAIIASEIEFHKLGLVVIDEQHKFGVKQRGQLRGAGLDP 418

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H L+MTATPIPRT+ ++  GD+D+S I E P GR+P+ T I      ++  +  +  L E
Sbjct: 419 HYLVMTATPIPRTIAMSLFGDLDVSSIREAPPGRQPVHTYIGTEEEREKWWKFFRKKLRE 478

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLH--EHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           G++ Y + P ++E   ++  S  +   +L   E     + ++HGRMS  DKE  M  F+ 
Sbjct: 479 GRQGYVVAPLVDESSSADSASAEQLLETLSNGELEEFRLGLLHGRMSAEDKEETMRKFRA 538

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  + L++T+VIEVG+DV +A ++ IE  E FGLAQLHQLRGR+ RG      + ++  P
Sbjct: 539 GEIQALVSTSVIEVGVDVPNAVVMTIEGGERFGLAQLHQLRGRISRGSHA-GFLCIFADP 597

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            + +S  RL  L  + DGF +AE D + R  G++ G KQ GMP   IA  +    LLE A
Sbjct: 598 KTDHSRERLEALAKSNDGFELAELDFRLRGPGDLFGFKQHGMPPLRIADLQRDGDLLEKA 657

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYL 687
           R DA+ I+  DP L   + + +R ++++
Sbjct: 658 RADARSIIAADPALADAKWEKLRRMVFI 685


>gi|293376126|ref|ZP_06622374.1| ATP-dependent DNA helicase RecG [Turicibacter sanguinis PC909]
 gi|325841635|ref|ZP_08167412.1| ATP-dependent DNA helicase RecG [Turicibacter sp. HGF1]
 gi|292645253|gb|EFF63315.1| ATP-dependent DNA helicase RecG [Turicibacter sanguinis PC909]
 gi|325489913|gb|EGC92261.1| ATP-dependent DNA helicase RecG [Turicibacter sp. HGF1]
          Length = 681

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/680 (32%), Positives = 366/680 (53%), Gaps = 31/680 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++  +GVGK     L+++            DLL Y P  + +      I     E  +T+
Sbjct: 8   VTEVKGVGKAMVEKLAQLK------IVTVKDLLEYFPYRYENY-ELIDIHHAMHEEKITV 60

Query: 73  TGYISQHSSFQLQK----RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              +    S Q       R  + +L+N    ++         + LKN       ITVTGK
Sbjct: 61  EAKVITACSVQYYGKMKARMSFNVLVNHEVVKVV----VFNRQFLKNQLKLDTLITVTGK 116

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPE 187
               +  I       I  +++      IE VYSL   +    FKKI+  A  +   ++ +
Sbjct: 117 WDLGRKVITAT--DIIIGSAEGRG---IEPVYSLKE-IPTKTFKKIVKAAYEQFHSLIND 170

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +  DL Q     S  +A +  H P+     E       R+ Y+ELL  Q+ +  +R Q 
Sbjct: 171 DLPLDLQQSYRLISYKDAVSFAHFPKNK---EQVRQVERRIKYEELLKFQLKIQYLRHQT 227

Query: 248 KKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           K E        +    ++ +  +PF  T++Q + + +I  D+    RM R+LQGDVGSGK
Sbjct: 228 KHEKVGANKCFDEMKVEQFIHQLPFQLTEAQLTVLSEIKTDLMSPTRMNRLLQGDVGSGK 287

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRR 365
           T+VA +++   + AG Q  +M P  IL QQHY+   +     + + +E ++ ++    RR
Sbjct: 288 TVVAAVSLFMTMLAGFQTALMVPTEILGQQHYKSFCELFSPFKEVNIEFLSSSVKGKRRR 347

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE++  G+ ++++GTHA+ Q  + +  L LVI DEQHRFGV QR  L +K     VL+
Sbjct: 348 EILEKLRQGEINLLVGTHAIIQQEVVFQNLGLVITDEQHRFGVNQRKMLREKGEFVDVLM 407

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKK 484
           MTATPIPRTL +++ GD+D+S IT+ P GRKP++T +I   ++D  +  ++   LS+G++
Sbjct: 408 MTATPIPRTLAISAFGDMDVSTITQMPKGRKPVETYLIDSGKLDRALNFIQDEILSKGQQ 467

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTC 542
           AY I P IEE +  + ++ VE ++    HF   + + ++HGR+S  +K++VMD F     
Sbjct: 468 AYVITPLIEESEAMDVQNAVEVYHLWQHHFQGRAKVGLMHGRLSQAEKDAVMDDFVANRS 527

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++LI+TTVIEVG++V +A++++I +A  FGL+QLHQLRGRVGRG E + C+L+     ++
Sbjct: 528 QILISTTVIEVGVNVPNANLMLIYDAHRFGLSQLHQLRGRVGRGSEQAYCLLMSDIK-NE 586

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            S  RL+++  T +GF I+E DLK R  G+  G KQSG+P F +A      ++L++A +D
Sbjct: 587 ASLERLTIMTQTTNGFEISEADLKLRGPGDFFGEKQSGVPVFKMADLVQDFNILQVAMQD 646

Query: 663 AKHILTQDPDLTSVRGQSIR 682
           A  +++ D    +     +R
Sbjct: 647 AYRLVSSDEFKQNNLYLPLR 666


>gi|302537159|ref|ZP_07289501.1| ATP-dependent DNA helicase RecG [Streptomyces sp. C]
 gi|302446054|gb|EFL17870.1| ATP-dependent DNA helicase RecG [Streptomyces sp. C]
          Length = 735

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 222/730 (30%), Positives = 369/730 (50%), Gaps = 59/730 (8%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYIS 77
           G   +  L++            +DLL ++P  + +R     ++++++  +  VT+   ++
Sbjct: 16  GPATAKVLAE-----QLGLHTALDLLHHYPRRYAERGELTSLADLADQLDEHVTVVAQVA 70

Query: 78  QHSSFQL----QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
                         +  ++ + DG+G + L+FF             G +    GK+ +  
Sbjct: 71  DARLLTYHGSRGGGKRLEVTITDGSGRLQLVFFGAGVHKPHKELLPGSRAMFAGKVSRFN 130

Query: 134 NRIIMVHPHYIFHNSQDVN-------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           +++ + HP Y    +   +          +  +Y     L      K +   L R     
Sbjct: 131 HKLQLAHPAYEPLGADASDRDAATAFANQLIPIYPACAKLESWKIAKCVDAVLPRAQEAV 190

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + +   L + +    + EA   IH P    D E    AR+RL +DE    Q+AL   R  
Sbjct: 191 DPLPPALREGRGLVPLTEALLKIHRPATKADIE---DARQRLKWDEAFVLQVALARRRHA 247

Query: 247 FKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             +   +      G +   +   +PF+ T  Q+   K+I  D++  + M R+LQG+VGSG
Sbjct: 248 DSQLPAVARRATPGGLLDALDAKLPFTLTDGQQKVSKEIFDDLATSHPMHRLLQGEVGSG 307

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-----------QIIVEI 354
           KTLVAL AM A V++GGQA ++AP  +LAQQH+  I +                   V +
Sbjct: 308 KTLVALRAMLAVVDSGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDQGTKVVL 367

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+M  A RR+AL  +  G+A ++IGTHAL +D +Q++ L LV+VDEQHRFGV+QR  L
Sbjct: 368 LTGSMGTAARRQALLDLVTGEAGLVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDAL 427

Query: 415 T-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----ID 469
             +    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI T ++P       + 
Sbjct: 428 RSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPARDKPHFLS 487

Query: 470 EVIERLKVVLSEGKKAYWICPQI----------------EEKKESNFRSVVERFNSLHEH 513
              ER++  +  G +AY +CP+I                +E ++    +V+E    L   
Sbjct: 488 RAWERVREEVENGHQAYVVCPRIGDGEDDPKNKKKASAEDEAEKRPPLAVLEIAEQLTRG 547

Query: 514 FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
             +  S+ ++HGRM   DK+ VM  F  G  K+L+ATTVIEVG++V ++++++I +A+ F
Sbjct: 548 PLAGLSVEVLHGRMDPADKDDVMRRFAAGEVKVLVATTVIEVGVNVPNSTVMVIMDADRF 607

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           G++QLHQLRGRVGRG     C+L+     +  +  RL+ +  T DGF ++  DL+QR+EG
Sbjct: 608 GVSQLHQLRGRVGRGSAPGLCLLVSEMHEASPARARLAAVAATLDGFELSRIDLEQRREG 667

Query: 632 EILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
           ++LG  QSG+     +      + ++  AR++A  ++  DP+L  + G  +R  L     
Sbjct: 668 DVLGQAQSGVRSSLRMLAVIDDEEVIAQAREEATRVVAADPELEHLPG--LRTALDALLD 725

Query: 691 NEAFQFIRAG 700
            E  Q++  G
Sbjct: 726 AEREQYLEKG 735


>gi|258511312|ref|YP_003184746.1| ATP-dependent DNA helicase RecG [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478038|gb|ACV58357.1| ATP-dependent DNA helicase RecG [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 678

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 228/679 (33%), Positives = 354/679 (52%), Gaps = 23/679 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            +    GVG +    L  +            DLL  +P  + D       SE  +   VT
Sbjct: 7   SVRALPGVGPQKERALEAL------GIRTVDDLLHTYPFRY-DERAEKPFSEWRDGDRVT 59

Query: 72  ITGYISQHSSFQLQKRRPY---KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
               +      + +  +     ++ + DG   +  L+F      L++   +GR I VTGK
Sbjct: 60  ARAVVEGPVQVRWRGSKSIMTARVRV-DGQHPVVCLWF--SQHYLRSKLSDGRFIVVTGK 116

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPE 187
             +   R++                P +  VY     LS     ++I++AL +    + E
Sbjct: 117 WNEALRRLVAS----ETSFDAGTQAPSLVPVYRASKELSTKAIHQLILKALEQYAEEIQE 172

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +   L++K    +  +A   +H P+  +D      AR RL ++E L  QI L  +R + 
Sbjct: 173 SLPYALVRKYRLWTHRDALFGMHRPKSLEDV---RQARRRLVFEEFLLFQIQLQWLRAKR 229

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++  G    V           +P   T +Q  A +DIL+D+ +   M R++QGDVGSGKT
Sbjct: 230 EEPAGRAQPVPSDALTAFEALLPGPMTNAQRRACEDILRDLQRPVPMTRLIQGDVGSGKT 289

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VAL A  A   A GQ+ +MAP  ILA+QH     +   +  + VE++TG++    R + 
Sbjct: 290 WVALFACFAVHLARGQSALMAPTEILAEQHARLAHELLGSAGVRVELLTGSVTGRERDRV 349

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  +A G   + +GTHAL  + +++  L L++ DEQHRFGV QR +L +K  AP VL+++
Sbjct: 350 LAGLASGDVSLAVGTHALLSEGVEFRDLALLVTDEQHRFGVAQRARLREKGRAPDVLMLS 409

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL L   GD+D+S + E P GRKP++T+ +P    + V+  ++  L+ G +AY 
Sbjct: 410 ATPIPRTLALAIYGDMDVSILNELPKGRKPVQTIAVPSKDDETVLRLIRRELARGHQAYI 469

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P IE  +  +  SV E +  + EH     + ++HGRM   DKE +M +F++G    L+
Sbjct: 470 VAPAIEASERDDVASVTELYERVREHLAGFRVELLHGRMPSADKERMMRAFRDGDIHALV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVGIDV +A+++ I  AE FGLAQLHQLRGRVGRG   S C LL H   S+ +  
Sbjct: 530 ATTVIEVGIDVPNATVMAIYGAERFGLAQLHQLRGRVGRGPHPSYC-LLIHDASSEAARA 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+  +  T DGF IAE DL+ R  GE+ G++QSG+P+F +        ++E+AR++A  +
Sbjct: 589 RIETMLQTNDGFEIAERDLELRGPGELFGLRQSGLPEFALGDLARDYRIMEVAREEALAL 648

Query: 667 LTQDPDLTSVRGQSIRILL 685
           L +D    +   + +R  L
Sbjct: 649 LRRDDFWYAPWAEGLRNAL 667


>gi|326803889|ref|YP_004321707.1| ATP-dependent DNA helicase RecG [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651420|gb|AEA01603.1| ATP-dependent DNA helicase RecG [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 679

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 231/669 (34%), Positives = 374/669 (55%), Gaps = 27/669 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  +  P+S   GVG K +  L ++            DLL   P  + D      I E++
Sbjct: 1   MTSITDPVSVLTGVGPKKAALLKRLK------IESIYDLLCQFPFRYEDLS-VKSIQELA 53

Query: 66  EERIVTITGYISQHSSFQL---QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           + +  T+ G +           +K       L      I + FF +    LK       +
Sbjct: 54  DNQKATLKGRVVTEPVVSYFRGRKGNRLHFRLQVDHEIINVNFFNQ--AYLKRQIHSQEE 111

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           I + G  +  + +++ +    I  +S+D        VY    GLS    +++I  AL + 
Sbjct: 112 ILIYGTYEAKRQQLLGIK--LINFSSEDNETAS---VYHTTKGLSQSALRQLIKTALDQY 166

Query: 183 -PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              +PE I ++L ++       +A  ++H P    D   +  AR ++ Y EL    + + 
Sbjct: 167 EDQIPELIPEELSRRYQLIPHRQAIRLMHFPNTEAD---SQHARRQIKYQELFLYSLRIQ 223

Query: 242 LMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             +  Q  +E G+ I  +    ++ +R+IPF  T+ Q+     I +D+ Q   M R+LQG
Sbjct: 224 WRKLNQRYQEAGVQILYDNDQLKEFIRSIPFELTQGQKEVTNQICRDLLQPYPMNRLLQG 283

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VALIA+AAAV AG Q  +M P  ILA+QH++  +   Q T +   ++TG+  
Sbjct: 284 DVGSGKTIVALIALAAAVSAGFQGALMVPTEILAEQHFKEAQSIYQATGLRCALLTGSTK 343

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R++ L ++A G   ++IGTHALFQ+ + +  L LVI+DEQHRFGV+QR +L  K T 
Sbjct: 344 GKERKQILAQLAQGDLDLMIGTHALFQEDVHFKDLGLVIIDEQHRFGVKQRRQLIDKNTD 403

Query: 421 PH--VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            H  VL MTATPIPRTL +T +GD+++SK+ E PAGR+P+KT+ +      +V   LK  
Sbjct: 404 RHPNVLYMTATPIPRTLEITLMGDMEVSKLKELPAGRQPVKTLWLRPQEASQVDYLLKQE 463

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDS 536
           L++G++AY ICP + E ++   ++  + +      F     + ++HG++S+ +KE+VM +
Sbjct: 464 LAKGRQAYIICPLVGESEKVEAQNAEKIYADYQARFGDHYQVGLLHGQLSNEEKEAVMQA 523

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           + + T +LL+ATTV+EVG++V +AS+++I +A+HFGLAQLHQLRGRVGRG+  S C+LL 
Sbjct: 524 YSDNTIQLLVATTVVEVGVNVPNASLMVILDADHFGLAQLHQLRGRVGRGQAASFCLLLA 583

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            P  ++N   R+ ++  + DGF ++++DL+ R  G+  G KQSG+P+F +A P     +L
Sbjct: 584 DPH-TENGKERMRIMTESNDGFYLSQQDLELRGAGDYFGTKQSGLPEFHLADPVEDGEIL 642

Query: 657 EIARKDAKH 665
           E +R+DA  
Sbjct: 643 EYSRQDAIQ 651


>gi|149928265|ref|ZP_01916508.1| ATP-dependent DNA helicase RecG [Limnobacter sp. MED105]
 gi|149822994|gb|EDM82236.1| ATP-dependent DNA helicase RecG [Limnobacter sp. MED105]
          Length = 703

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 227/664 (34%), Positives = 354/664 (53%), Gaps = 31/664 (4%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITL 103
           L  + P  F D+     +  +   + V +   +   +  Q   R+  ++ + DG   + L
Sbjct: 38  LALHLPLRFEDKASITAMDSLQLGQKVNLLATVVG-TEVQYHPRKQLRVWVEDGDTTLLL 96

Query: 104 LFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-------- 155
            + +     L+    EG +I + G+I++      MVHP         ++  +        
Sbjct: 97  RWLHFYPG-LQQKLSEGTRIQINGQIRQGYGTFEMVHPTVKIAPPGTLDASINPIAPPTN 155

Query: 156 ----IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH- 210
               +E VY     L    + + + +  +      + +  +L +K        A   +H 
Sbjct: 156 SSSVLEPVYPSTGQLKQSDWHRWMKKLPAAC--FIDTLPTNLCKKHKLLPWPTALQTLHG 213

Query: 211 --NPRKAKDFE-WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE----GKIAQ 263
              P +  D    T PA  R+  DELLA Q+ L   R+Q   E   P+  E      +  
Sbjct: 214 QAKPEELYDLNLRTHPAWTRVKVDELLAQQLLLREYRQQRTLEKASPLKAEKITKTSLVC 273

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           + +  +PF  T +QE A ++I +D++    M R+LQGDVGSGKTLVA +A   A+E G Q
Sbjct: 274 QFMAQLPFQLTGAQERACREIFEDLAHPYPMQRLLQGDVGSGKTLVAALACLRAIENGKQ 333

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A I+AP  +LA QH+  +        +    + G M ++ + + L+ +A G+  +IIGTH
Sbjct: 334 AAILAPTEVLAAQHHHKLAPLFDAVGVRCAKLQGAMKKSEKDRTLKALAAGEIDVIIGTH 393

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSL 440
           AL QD +Q+  L LV+VDEQHRFGV QRL L  KA+     H L+M+ATPIPRTL  T L
Sbjct: 394 ALVQDHVQFQSLALVVVDEQHRFGVAQRLSLIAKASDGHLAHQLMMSATPIPRTLAQTYL 453

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            D+ +S + EKP GRKPI T ++   + +++I  ++  +++G++ YW+CP IEE +  + 
Sbjct: 454 SDLAVSSLDEKPPGRKPIITKLLSQKKREQLISAIEGEINKGQQVYWVCPLIEESETLDL 513

Query: 501 RSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           ++    +  L E   +  I ++HG+  +  K++ M +F  G   LL++TTVIEVG+DV +
Sbjct: 514 QAAQATYADLCEQLPTRRIGLLHGKQDNKLKQATMAAFSAGELDLLVSTTVIEVGVDVGN 573

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           AS+++I+ AE FGLAQLHQLRGRVGRG   S C+LLY  PLS  S  RL  +  ++DGF 
Sbjct: 574 ASLMVIDQAERFGLAQLHQLRGRVGRGSVQSVCVLLYGGPLSNTSKLRLKAMHESDDGFY 633

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
           +AE+DL+ R  GE+LG +QSG+P    A P +   LLE+AR  A+ +    P+  + R  
Sbjct: 634 LAEKDLEIRGPGELLGKRQSGLPMMRYADPLVDKDLLELARTLAQQM---PPEAENTRRH 690

Query: 680 SIRI 683
             R 
Sbjct: 691 VQRW 694


>gi|254303429|ref|ZP_04970787.1| ATP-dependent DNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323621|gb|EDK88871.1| ATP-dependent DNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 689

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/650 (34%), Positives = 359/650 (55%), Gaps = 14/650 (2%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ-K 86
            ++ N  +       DL++Y P ++ DR    KI E+     V +   +    +  ++  
Sbjct: 23  KQLSNLKSLGINTVYDLIYYFPRAYDDRTNIKKIGELKFNEYVVLKANVMSVVNLTVRSG 82

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IF 145
           ++  K +++DGTG + +L+F      +K     G +    G+ KK      +++P Y +F
Sbjct: 83  KKIVKAMVSDGTGIMEILWF--GMPYIKKSLKIGEEYLFIGQTKKS-AVFQLINPEYKLF 139

Query: 146 HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAE 204
              Q  +   I  +YS    ++ +  +K++ + L + L    E I K+L+++        
Sbjct: 140 SGQQKASESEILPIYSSNKNITQNSLRKLVEKFLVNFLNYFEENIPKELIKEYKIMERKS 199

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG--KIA 262
           A   IH P   K+ E     + R A +ELL  ++ +L  R   +        VEG  +  
Sbjct: 200 AIKNIHYPVSMKEIEEA---KRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKV 256

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++ L  + F+ T +Q+  IK+I  ++S    + R++QGDVGSGKT+VA++ +    E G 
Sbjct: 257 KEFLSQLTFNLTNAQKKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGY 316

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  +MAP  ILA QHY  IK+  +   + VE++T ++    + + LE IA+G+  I+IGT
Sbjct: 317 QGALMAPTEILANQHYLGIKERLEKIGLRVELLTSSIKGKKKTEILESIANGEVDIVIGT 376

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H+L +D + + KL L+++DEQHRFGV QR KL +K    ++L+M+ATPIPR+L L+  GD
Sbjct: 377 HSLIEDDVIFKKLGLIVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGD 436

Query: 443 IDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           +D+S I E P GR PIKT  I  +  ++++   +   +++G +AY++ P IE   +   +
Sbjct: 437 LDLSIIDELPPGRTPIKTKWIANDEDLEKMYNFIYKKVNDGNQAYFVAPLIETSDKMALK 496

Query: 502 SVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           SV +    +   F    I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  +
Sbjct: 497 SVDKVSEEIERKFSNKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPTS 556

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           +I+ I NAE FGL+ LHQLRGRVGRG + S C L+ +   ++NS  RLS+++ TEDGF I
Sbjct: 557 TIMTIYNAERFGLSALHQLRGRVGRGSKQSYCFLISNST-TENSKQRLSIMEKTEDGFRI 615

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           AEEDLK R  GEI G++QSG               +++ R +    L + 
Sbjct: 616 AEEDLKLRNSGEIFGLRQSGFSDLKFIDIIYDVKTIKLVRDECIKYLKEH 665


>gi|87302807|ref|ZP_01085618.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 5701]
 gi|87282690|gb|EAQ74648.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 5701]
          Length = 862

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 232/705 (32%), Positives = 373/705 (52%), Gaps = 31/705 (4%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             PL+   G+G K +  L+ +      +  R      ++P  ++D     +I E+     
Sbjct: 164 DTPLAEVPGIGPKTATRLAGLGLLLARDLLR------HYPRDYLDYANLVRIRELVPGST 217

Query: 70  VTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVFF 118
            TI   + +  +F   +     IL   L+D TG + L  F+              +  F 
Sbjct: 218 ATIVATVQRSHAFASPRNPRLVILELQLHDITGRLRLSKFFAGRRFSSPGWLKAQQRQFP 277

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-----NFPLIEAVYSLPTGLSVDLFKK 173
            G  +  +G +++      +  P     +S +          +  VY+L  GL  +  ++
Sbjct: 278 PGCSVAASGLVRQTPYGPTLQDPLLEVLDSPNTPVRSRQIGRLVPVYALTEGLGAERLRQ 337

Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            I   L+      + +   L +++     A A+  +H+P    D      +R RL +DE 
Sbjct: 338 AIQTVLTAAAHWGDPLPAALRRQEGLQDRATAWRGLHDPADRDDL---RASRHRLVFDEF 394

Query: 234 LAGQIALLLMRKQFKKEIGIPINV---EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           L  Q++LL  R Q  +    P+ +   +  +    L  +PF  T++Q   + DI  D+ Q
Sbjct: 395 LLLQLSLLQRRAQLARRPARPLRLPRGQSSLMASFLELLPFQLTEAQRRVLADIQADLEQ 454

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           +  M R+LQGDVGSGKT+VA+ A+  A+EAG Q  +MAP  +LA+QH   + ++     +
Sbjct: 455 EQPMARLLQGDVGSGKTVVAIAALLVAIEAGCQGALMAPTEVLAEQHARKLGEWLSQLHV 514

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
              ++TG+ P   RR+ L+ +A+GQ  +++GTHAL +D + + +L LV+VDEQHRFGV+Q
Sbjct: 515 STALLTGSTPAGRRRQLLQDLANGQLQLLVGTHALLEDPVAFARLGLVVVDEQHRFGVRQ 574

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           R +L  K   PH+L MTATPIPRTL L+  GD+++S+I   P GR PI+T ++   +  E
Sbjct: 575 RDRLMGKGLQPHLLTMTATPIPRTLALSVHGDLEVSQIDGLPPGRTPIRTRLLRGGQRQE 634

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDI 528
             E ++  ++ G++AY + P +EE +  + RS V     L E       + ++HGRM   
Sbjct: 635 AYELIRAEVALGQRAYVVLPLVEESENLDLRSAVTVHQQLQEEIFPDLRVGLLHGRMPSP 694

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            K+  +++F +G C +L++TTV+EVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG  
Sbjct: 695 RKQEAINAFASGHCDVLVSTTVVEVGVDVPEASVMVIEHAERFGLAQLHQLRGRVGRGAA 754

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            S C LL +   +  +  RL +L  + DGF IAE DL+ R  G++LG +QSG+P   +A 
Sbjct: 755 ASHC-LLINDGKAGQAQQRLELLVRSSDGFEIAEMDLQLRGPGQVLGTRQSGLPDLALAS 813

Query: 649 PELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
                 +LE AR  A+ +L  DPDL    G    +L    +  E+
Sbjct: 814 LSDDGDVLEQARSLARRLLELDPDLEGHPGLRQALLEQRQRQVES 858


>gi|255281781|ref|ZP_05346336.1| ATP-dependent DNA helicase RecG [Bryantella formatexigens DSM
           14469]
 gi|255267848|gb|EET61053.1| ATP-dependent DNA helicase RecG [Bryantella formatexigens DSM
           14469]
          Length = 685

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 230/687 (33%), Positives = 364/687 (52%), Gaps = 17/687 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            PL   +G+G+K  L   K      A      DLL Y+P ++         S++ E R +
Sbjct: 5   TPLDELKGIGEKTKLVFEK------AGIRNLGDLLSYYPRTYRRFPEITDTSQVKEGREI 58

Query: 71  TITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            I     +  + Q  KR +    +L D  G I + ++      L+N    G      G+I
Sbjct: 59  AIYAAPERTLTVQYVKRMQIVSAVLCDKAGAIGVRWYN--MPYLRNTIKPGGYHVFCGRI 116

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +    + +  P              ++ VY L  GL+  L  K + +AL  + +  +++
Sbjct: 117 VQKGANLFLEQPAIYTPEQYQKLLAELQPVYVLTKGLTNQLVSKTVRQALDGMELSGDYL 176

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            +D+ ++        A   IH P+   D +    AR RL +DE     +AL   ++Q ++
Sbjct: 177 PEDIRRRYQLADYRNAIEEIHFPQ---DEQHMKIARRRLVFDEFFLFILALRQFKEQHEQ 233

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                      +   ++RN+ +  T +Q+   +DI +DM+ +    R++QGDVGSGKT++
Sbjct: 234 AKNPYTIRRTPLTDTVIRNLGYELTGAQQRVWEDIQRDMTGEKVAARLIQGDVGSGKTIL 293

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK--YTQNTQIIVEIITGNMPQAHRRKA 367
           A +AM  A E G Q+ +M P  +LA+QH++ + +    Q+ +    ++TG+M    +R A
Sbjct: 294 AFLAMILAAENGLQSALMVPTEVLARQHFDSMTELIEAQHLRFCPVLLTGSMTAREKRVA 353

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            E+IA G+A +IIGTHAL Q+ +QY ++ LVI DEQHRFGV+QR  L +K   PH L+M+
Sbjct: 354 CEKIASGEADMIIGTHALIQEKVQYKRMGLVITDEQHRFGVRQRELLGEKGAEPHTLVMS 413

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +   GD++IS I E P  R PIK  ++      +    ++  +  G +AY 
Sbjct: 414 ATPIPRTLAVILYGDLEISVIDELPKSRLPIKNCVVNTTYRKKAYHFIEKEIRLGHQAYI 473

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP +EE ++     V+     L E       I  +HG+M   +K  VM+ F  G  ++L
Sbjct: 474 ICPMVEENEQIEAEDVISYTERLREVMPEDIRIEYLHGKMKPKEKNEVMERFLCGDIQVL 533

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CI++     ++ + 
Sbjct: 534 VSTTVVEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGKAQSYCIMISSTD-NEKTR 592

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL +L ++ DGF IA EDLK R  G+ILG++QSG+ +F +A       +L+ A + A  
Sbjct: 593 KRLEILNHSNDGFFIASEDLKLRGPGDILGVRQSGLMEFKLADVFADAKILQNACEAADV 652

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNE 692
           IL  D  L +     +   L  Y  NE
Sbjct: 653 ILKHDSALQAPENAELHNKLENYLSNE 679


>gi|326776332|ref|ZP_08235597.1| ATP-dependent DNA helicase RecG [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656665|gb|EGE41511.1| ATP-dependent DNA helicase RecG [Streptomyces cf. griseus
           XylebKG-1]
          Length = 735

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 223/738 (30%), Positives = 372/738 (50%), Gaps = 61/738 (8%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL     +G   +  +++ ++          DLL ++P  + +R     ++++  +  VT
Sbjct: 10  PLKKL--LGGATAKVMAEHLDL-----HTVGDLLHHYPRRYEERGRLTALADLPLDEHVT 62

Query: 72  ITGYISQHSS--FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           +   ++      F   + +  ++ L DG+G + L+FF             GR+    GK+
Sbjct: 63  VVAQVADARILMFNNGRGKRLEVTLTDGSGRLQLVFFGHGVHKPHKELLPGRQAMFAGKV 122

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNF---------PLIEAVYSLPTGLSVDLFKKIIVEALS 180
                ++ + HP Y   ++ D +            +  +Y     L      K +   L 
Sbjct: 123 SVFNRKMQLAHPTYQLLDASDADEATEAVDAFAGRLLPIYPACKQLDSWRIAKAVDAVLP 182

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
                 + +   L + + F S+ EA    H P+   D E    AR RL +DE    Q+AL
Sbjct: 183 SARDAVDPLPASLREGRGFTSLPEALLKAHRPQTKADIE---DARARLKWDEAFVLQVAL 239

Query: 241 LLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
              R    +        V   +       +PF+ T+ Q+   K+I   ++ ++ M R+LQ
Sbjct: 240 ARRRYADTQLPAAARRPVADGLLDAFDAKLPFTLTEGQQKVSKEIFDGLATEHPMHRLLQ 299

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNT 348
           G+VGSGKT+VAL AM A V+AGGQA ++AP  +LAQQH+  I +              + 
Sbjct: 300 GEVGSGKTMVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDH 359

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              V ++TG+M  A RR+AL  +  G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV
Sbjct: 360 GTKVVLLTGSMGTAARRQALLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGV 419

Query: 409 QQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           +QR  L  +    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI + ++P   
Sbjct: 420 EQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKD 479

Query: 468 ----IDEVIERLKVVLSEGKKAYWICPQI------------------EEKKESNFRSVVE 505
               +    ER++  +  G +AY +CP+I                  E+  +    +V+E
Sbjct: 480 KPHFLARAWERVREEVENGHQAYVVCPRIGDDAEEEKKGRAKKKAAEEDPDKRPPLAVLE 539

Query: 506 RFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
             + L +   +   + ++HGRM   +K+ VM  F  G   +L+ATTVIEVG++V +A+ +
Sbjct: 540 IADELRKGALAGLGVEVLHGRMHPDEKDDVMRRFAAGDVHVLVATTVIEVGVNVPNATAM 599

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +I +A+ FG++QLHQLRGRVGRG     C+L+     +  +  RLS +  T DGF ++  
Sbjct: 600 VIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEAHEASPARARLSAVAATLDGFELSRI 659

Query: 624 DLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           DL+QR+EG++LG  QSG+     +      + ++  AR++A  I+  DP+L  +    +R
Sbjct: 660 DLEQRREGDVLGQAQSGVRSSLRMLTVIDDEEVIAAAREEAVAIVAADPELEHLP--ELR 717

Query: 683 ILLYLYQYNEAFQFIRAG 700
            +L      +  +++  G
Sbjct: 718 TVLAALLDKDREEYLDKG 735


>gi|237742689|ref|ZP_04573170.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 4_1_13]
 gi|294784786|ref|ZP_06750074.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_27]
 gi|229430337|gb|EEO40549.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 4_1_13]
 gi|294486500|gb|EFG33862.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_27]
          Length = 689

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/650 (34%), Positives = 358/650 (55%), Gaps = 14/650 (2%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ-K 86
            ++ N  +       DL++Y P ++ DR     I E+     V +   +    +  ++  
Sbjct: 23  KQLSNLKSLGINTVYDLIYYFPRAYDDRTNIKSIGELKFNEYVVLKATVMSVVNLTVRSG 82

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IF 145
           ++  K ++ DGTG + +L+F      +K     G +    G+ KK      +++P Y +F
Sbjct: 83  KKIVKAMVTDGTGIMEILWF--GMPYIKKSLKIGEEYLFIGQTKKS-AVFQLINPEYKLF 139

Query: 146 HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAE 204
              Q V+   I  +YS    ++ +  +K++ + L + L    E I   L+++        
Sbjct: 140 SGQQKVSENEILPIYSSNKNITQNSLRKLVEKFLVNFLNYFEENIPNKLIKEYRIMERKR 199

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG--KIA 262
           A   IH P   K+ E     + R A +ELL  ++ +L  R   +        VEG  +  
Sbjct: 200 AIKNIHYPISMKEIEEA---KRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKV 256

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++ L  + F+ T +Q+  IK+I  ++S    + R++QGDVGSGKT+VA++ +    E G 
Sbjct: 257 REFLSQLTFNLTNAQKKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGY 316

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  +MAP  ILA QHY  IK+  +   + VE++T ++    + + LE IA+G+  I+IGT
Sbjct: 317 QGALMAPTEILANQHYLGIKERLEKIGLRVELLTSSIKGKKKNEILEGIANGEIDIVIGT 376

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H+L +D++ + KL L+++DEQHRFGV QR KL +K    ++L+M+ATPIPR+L L+  GD
Sbjct: 377 HSLIEDNVIFKKLGLIVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGD 436

Query: 443 IDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           +D+S I E P GR PI+T  I  +  ++++   +   ++EG +AY++ P IE   +   +
Sbjct: 437 LDLSIIDELPPGRTPIRTKWIANDEDLEKMYNFIYKKVNEGNQAYFVAPLIETSDKMALK 496

Query: 502 SVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           SV +    +   F    I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  +
Sbjct: 497 SVDKVSEEIERKFSNKKIGIIHGKMKAKEKDDVMLKFKNKEYDILIATTVIEVGIDVPAS 556

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           +I+ I NAE FGL+ LHQLRGRVGRG + S C L+ +  +++NS  RLS+++ TEDGF I
Sbjct: 557 TIMTIYNAERFGLSALHQLRGRVGRGSKQSYCFLISN-SITENSKQRLSIMEETEDGFRI 615

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           AEEDLK R  GEI G++QSG               +++ R +    L + 
Sbjct: 616 AEEDLKLRNSGEIFGLRQSGFSDLKFIDIIYDVKTIKLVRDECIKYLKEH 665


>gi|171464093|ref|YP_001798206.1| ATP-dependent DNA helicase RecG [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193631|gb|ACB44592.1| ATP-dependent DNA helicase RecG [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 695

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 238/660 (36%), Positives = 360/660 (54%), Gaps = 33/660 (5%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERI---VTITGYISQHSSFQLQKRRPYKILLNDGTGE 100
           L  + PS + D      I E   +         G + ++       RR   + + D T  
Sbjct: 21  LALHLPSRYEDETELLTIEEAIVQGRFASAQTQGAVIRNQ-VLFCPRRQMVVTIEDETET 79

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAV 159
           + L F        K +   G  + V G++++      MVHP  +   + D   P  +  V
Sbjct: 80  LNLRFLNFYPSQQKQM-AVGVNVRVRGEVREGFQGPEMVHP-IVRAVAPDAPLPTSLTPV 137

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEK----DLLQKKSFPSIAEAFNIIHNP 212
           Y     +S  + +K + +AL    +   L E + K    +LL    +PS+  A   +H P
Sbjct: 138 YPASVSVSQTVIRKAVNQALRDPSLQKSLAESLPKKLMSELLPSNDWPSLQSAIKYLHQP 197

Query: 213 RKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA------ 262
               +     + T PA  R+ ++ELLA QI+L       ++                   
Sbjct: 198 PADANTQSLLDRTHPAWRRVQFEELLAQQISLKRAHAIHRERQAPSFEKMKDEGKGKGGK 257

Query: 263 ----QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
               + +L+ +PF  T +Q+    +I +D+S+   M R+LQGDVGSGKT+V+ +A A A+
Sbjct: 258 QGLEEGLLKVLPFKLTNAQDRVWSEISKDLSKSFPMNRLLQGDVGSGKTVVSALAAARAM 317

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           + G QA IMAP  ILA+QHY  +K++ +   + +  ++G++    +R A   I +GQA +
Sbjct: 318 DHGYQAAIMAPTEILAEQHYLKMKEWFEPLGVRIAWLSGSLKAKEKRLAQGEIENGQAQL 377

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLMTATPIPRT 434
           IIGTHAL Q+++ + KL L ++DEQHRFGV+QRL++ Q+        H L+M+ATPIPRT
Sbjct: 378 IIGTHALIQENVCFAKLGLAVIDEQHRFGVRQRLEIQQRVGSELFYCHQLMMSATPIPRT 437

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GRKPI T ++  +R DEVI  L+  LS+G +AYW+CP IEE
Sbjct: 438 LAMTYYADLDVSVIDELPPGRKPIATKVVKASRRDEVIGGLRSWLSKGLQAYWVCPLIEE 497

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  E F  L +      + +IHGR+   +K +VM +FK    +LL+ATTVIEV
Sbjct: 498 SEALQLQTATESFEQLTQVLPDFKVGLIHGRLKAEEKAAVMAAFKANEIQLLVATTVIEV 557

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G++V +A++++IE+AEHFG AQ+HQLRGRVGRG   S CIL+Y  PLS  +  RL  L+ 
Sbjct: 558 GVNVPNAALMVIEHAEHFGYAQIHQLRGRVGRGSAESVCILMYAEPLSMAAKERLQTLRE 617

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF+IAE DL  R  GE+LG KQSG         +    L+E+A++ A  +L +  DL
Sbjct: 618 TSDGFVIAERDLLLRGPGELLGAKQSGDAMLRFVDLQRDAWLIELAQQAADRLLAEHADL 677


>gi|256028462|ref|ZP_05442296.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D11]
 gi|289766383|ref|ZP_06525761.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D11]
 gi|289717938|gb|EFD81950.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D11]
          Length = 689

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/650 (34%), Positives = 358/650 (55%), Gaps = 14/650 (2%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ-K 86
            ++ N  +       DL++Y P ++ DR    KI E+     V +   +    +  ++  
Sbjct: 23  KQLSNLKSLGINTIYDLIYYFPRAYDDRTNIKKIGELKFNEYVVLKAIVMSAVNLTVRSG 82

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IF 145
           ++  K ++ DGTG + +L+F      +K     G +    G+ KK      +++P Y +F
Sbjct: 83  KKIVKAMVTDGTGIMEILWF--GMPYIKKSLKIGEEYLFIGQTKKS-AVFQLINPEYKLF 139

Query: 146 HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAE 204
              Q V+   I  +YS    ++ +  +K++ + L + L    E I  +L+++        
Sbjct: 140 SGQQKVSENEILPIYSSNKNITQNSLRKLVEKFLVNFLNYFEENIPDELIKEYKIMERKS 199

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG--KIA 262
           A   IH P   K+ E     + R A +ELL  ++ +L  R   +        VEG  +  
Sbjct: 200 AIKNIHYPVSMKEIEEA---KRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKV 256

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +  L  + F+ T +Q+  IK+I  ++S    + R++QGDVGSGKT+VA++ +    E G 
Sbjct: 257 KNFLSQLTFNLTNAQKKLIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGY 316

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  +MAP  ILA QHY  IK+  +   + VE++T ++    + + LE IA+G   I+IGT
Sbjct: 317 QGALMAPTEILANQHYLGIKERLEKIGLRVELLTSSIKGKKKNEILEGIANGDIDIVIGT 376

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H+L +D++ + KL L+++DEQHRFGV QR KL +K    ++L+M+ATPIPR+L L+  GD
Sbjct: 377 HSLIEDNVVFKKLGLIVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGD 436

Query: 443 IDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           +D+S I E P GR PIKT  I  +  ++++ + +   ++ G +AY++ P IE   +   +
Sbjct: 437 LDLSIIDELPPGRTPIKTKWIANDEDLEKMYDFIYKKVNAGNQAYFVAPLIETSDKMELK 496

Query: 502 SVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           SV +    +   F    I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  +
Sbjct: 497 SVDKVSEEIERKFSNKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPAS 556

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           +I+ I NAE FGL+ LHQLRGRVGRG + S C L+ +  +++NS  RLS+++ TEDGF I
Sbjct: 557 TIMTIYNAERFGLSALHQLRGRVGRGSKQSYCFLISN-SITENSKQRLSIMEETEDGFRI 615

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           AEEDLK R  GEI G++QSG               +++ R +    L + 
Sbjct: 616 AEEDLKLRNSGEIFGLRQSGFSDLKFIDIIYDVKTIKLVRDECIKYLKEH 665


>gi|222151060|ref|YP_002560214.1| ATP-dependent DNA helicase [Macrococcus caseolyticus JCSC5402]
 gi|222120183|dbj|BAH17518.1| ATP-dependent DNA helicase [Macrococcus caseolyticus JCSC5402]
          Length = 678

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 212/680 (31%), Positives = 355/680 (52%), Gaps = 23/680 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
            + L   +GVG K    L+ +      N     DL+ Y P  + D      + E  +   
Sbjct: 10  DSTLKELKGVGPKSLESLNSL------NIHSIEDLILYLPYKYEDETVI-NLHEAEDGAK 62

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           +T+ G I          R   K+  +     + +   +     +K +   G+ + VTGK 
Sbjct: 63  ITVQGEIYSAPVLAHFGRGKSKVSFHMMVDNVAVKIEFFNQMYVKRIAEIGKTVKVTGKW 122

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
            + K  I           S+D +  + +   YSL   +    F+K+I  A   + + P +
Sbjct: 123 NRSKQVIQGSK------ISEDEHSGVQLVPQYSLKGLIKRAQFRKMIDSAFQTVKIQP-F 175

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           + + L  +     + ++   +H P   K  +     R   A+ ELL  Q+ + ++ + + 
Sbjct: 176 LPEHLKVRYKLWDLDQSLYELHIPSSHKHLQQA---RRSFAFCELLLFQLKMRMLNQLEQ 232

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
                  ++ +    +  +  +PF  T++Q+  + +I +DM  + RM R+LQGDVGSGKT
Sbjct: 233 SGAPHSKVDYDITKVKAFIDTLPFELTEAQKQVVNEIFRDMKHEFRMNRLLQGDVGSGKT 292

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA I M A + AG Q+ +M P  ILA+QH E + +    + + + ++T ++    RR  
Sbjct: 293 IVAAICMYALMTAGRQSALMVPTEILAEQHAESLSEIYGES-LNIALLTSSIKGKKRRLI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           LE +  G   II+GTHAL  + +Q+  L LVI DEQHRFGV QR  L +K    +VL MT
Sbjct: 352 LEALERGDIDIIVGTHALISEPVQFNDLGLVITDEQHRFGVNQRKLLREKGNDANVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL ++  G++D+S I + P GRKPI T       I+ V ++    +  G++ Y 
Sbjct: 412 ATPIPRTLAISVFGELDVSTIKQMPKGRKPIITEWAKHEEIEIVHDKTAREIRAGRQVYV 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           ICP IE  +  + ++  E + +    F T  + ++HG+M   +K+ VM+ F+N    +++
Sbjct: 472 ICPLIEASQHLDVKNATEIYEAYQRLFGTDKVGLLHGKMKTEEKDEVMNKFQNHDFDVIV 531

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG++V +A++I+I +AE FGL+ LHQLRGRVGR    S CIL+ +P  S+    
Sbjct: 532 STTVVEVGVNVPNATMIVIYDAERFGLSTLHQLRGRVGRSSYQSYCILVGNPE-SETGIE 590

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL ++  T DGF+++E+DL+ R  G+  GIKQSG+P F +A       +LE+AR +A  +
Sbjct: 591 RLQIMTQTTDGFVLSEKDLEMRGPGDFFGIKQSGLPDFKVANIVEDYRMLEVARDEASEL 650

Query: 667 LTQDPDLTSVRGQSIRILLY 686
           +     +     +++++ L 
Sbjct: 651 I-LSGAIEQPELRALKMRLD 669


>gi|168182572|ref|ZP_02617236.1| ATP-dependent DNA helicase RecG [Clostridium botulinum Bf]
 gi|237795934|ref|YP_002863486.1| ATP-dependent DNA helicase RecG [Clostridium botulinum Ba4 str.
           657]
 gi|182674174|gb|EDT86135.1| ATP-dependent DNA helicase RecG [Clostridium botulinum Bf]
 gi|229262431|gb|ACQ53464.1| ATP-dependent DNA helicase RecG [Clostridium botulinum Ba4 str.
           657]
          Length = 679

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 226/681 (33%), Positives = 376/681 (55%), Gaps = 24/681 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFI--DRHYRPKISEISEE 67
           ++P++T +GVG K    L K            +DLL Y P  +   D + + K+      
Sbjct: 4   YSPITTLKGVGPKTKEQLEK------CMIFNIMDLLLYFPRDYEFIDNYSKDKLLS---- 53

Query: 68  RIVTITGYISQH-SSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           + V I   +       + +  +    I+ NDG   I   +F +    +KN F  G +  +
Sbjct: 54  KKVIIKVQVENIKRDIRTRTGKILTTIIFNDGEKAIVGSWFNQ--PYIKNYFKIGEEYVL 111

Query: 126 TGKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
            G +K+ +  + + +   + +  +++V    I   Y L   L  +L  K++   L+ +  
Sbjct: 112 QGSLKEYRGNLTINNAQILKNKCAEEVEERKIIPKYPLKGDLKNNLLIKLVDSVLTNID- 170

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E +   L++K  F S+ ++   IH P   K+ E +     RL + ELLA  + +  ++
Sbjct: 171 IGENLPIWLIEKYKFLSLDKSIRTIHKPENQKELEESI---RRLKFQELLAYCLKIAFLK 227

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +  +        +  +    ++  +PF  T +Q   +++I +D  ++  M R+LQGDVGS
Sbjct: 228 EYLETATEGISFIVSEEINNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMNRLLQGDVGS 287

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++ALI++   ++ G Q V++AP  ILA QHYE   K  ++  + +E++ G++  + +
Sbjct: 288 GKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELLIGSIKVSSK 347

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           ++  E++  G+  +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+  K  +   L
Sbjct: 348 KEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKMLNKGKSVDTL 407

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPR+L L+  GD+D+S I E P GR+ I T  +  +    V       ++ G++
Sbjct: 408 VMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFALKEINNGRQ 467

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP +EEK+E +  SV + +N L E +   +  AI+HG+M   +K+++M  FK G  
Sbjct: 468 VYIVCPLVEEKEELDLNSVEKLYNDLKEEYFKEVEIAILHGKMKGKEKDTIMKDFKEGKI 527

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CIL+       
Sbjct: 528 KALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCILIAKVKNDI 587

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++K++ DGFL+AEEDLK R  GEI G KQ G    L+A       LL IA  +
Sbjct: 588 I-RKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIEDIHLLRIANME 646

Query: 663 AKHILTQDPDLTSVRGQSIRI 683
           +K I+  + +  +   + ++I
Sbjct: 647 SKKIIDSNNEEDNKIKEEVKI 667


>gi|239982544|ref|ZP_04705068.1| ATP-dependent DNA helicase RecG [Streptomyces albus J1074]
 gi|291454386|ref|ZP_06593776.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
 gi|291357335|gb|EFE84237.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 734

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 226/730 (30%), Positives = 373/730 (51%), Gaps = 58/730 (7%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI-- 76
           VG   +  ++  ++          DLL ++P  + +R     ++++  +  VT+   +  
Sbjct: 15  VGPPTAKVMADHLDL-----HTVGDLLHHYPRRYAERGELTTLADLPLDEHVTVVAQVSD 69

Query: 77  SQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
           ++  +F   + +  ++ + DG+G + L+FF R           G +    GK+    +R+
Sbjct: 70  ARVHTFNAGRGKRLEVTITDGSGSLRLVFFGRGVHKPHQDLQPGTRAMFAGKVSVFNHRL 129

Query: 137 IMVHPHYIFHNSQDVN-----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
            + HP Y                 +  +Y     L      K +   L       + +  
Sbjct: 130 QLAHPAYQLLRGDGAEDVSSWAGALIPLYPATAKLESWKIAKAVDAVLPSADEALDPLPG 189

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
            L + +    + EA   IH P+   D    + AR RL +DE    Q+AL   R    +  
Sbjct: 190 ALREGRGLLPLPEALRKIHRPQSQADV---AQARARLKWDEAFVLQVALARRRHAEGQLS 246

Query: 252 GIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            +P               +PF+ T+ Q+   ++I  D++  + M R+LQG+VGSGKT+VA
Sbjct: 247 AVPRRPAPDGLLTAFDARLPFTLTEGQQKVSREIFDDLATDHPMHRLLQGEVGSGKTMVA 306

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------TQIIVEIITGNM 359
           L AM A V++GGQA ++AP  +LAQQH+  I +   +               V ++TG+M
Sbjct: 307 LRAMLAVVDSGGQAAMLAPTEVLAQQHHRSITEMMDDLADGSTLGAPEHATKVVLLTGSM 366

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL----- 414
             A RRKAL  +A G+A I+IGTHAL +D++Q+++L LV+VDEQHRFGV+QR  L     
Sbjct: 367 TAAARRKALLDLATGEAGIVIGTHALIEDTVQFHELGLVVVDEQHRFGVEQRDALRAKGH 426

Query: 415 -TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----ID 469
             ++A  PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI T ++P       + 
Sbjct: 427 TKEEARTPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPISTHVVPAQDKPHFLA 486

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFR----------------SVVERFNSLHEH 513
              ER++  +  G +AY +CP+I +++E   +                +V+E    L   
Sbjct: 487 RAWERVREEVENGHQAYVVCPRIGDEEEGGTKGTKKKAADEGDRRPPLAVLEVAEQLAAG 546

Query: 514 FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
             +   I ++HGRM+  DK+ VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ F
Sbjct: 547 PLAGLRIEVLHGRMAPDDKDDVMRRFAAGEVDVLVATTVIEVGVNVPNATAMVIMDADRF 606

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           G++QLHQLRGRVGRG     C+L+   P +  +  RL  +  T DGF ++  DL+QR+EG
Sbjct: 607 GVSQLHQLRGRVGRGSAPGLCLLVTDMPEAAPARARLGAVAATLDGFELSRIDLEQRREG 666

Query: 632 EILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
           ++LG  QSG+     +      + ++  AR++A   + +DPDL  +   ++R  L     
Sbjct: 667 DVLGQAQSGVRSSLRMLAVIEDEEIIAEAREEATRTVAEDPDLAGLP--ALRTALDALLD 724

Query: 691 NEAFQFIRAG 700
            E  Q++  G
Sbjct: 725 EEREQYLDKG 734


>gi|317050612|ref|YP_004111728.1| DEAD/DEAH box helicase domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316945696|gb|ADU65172.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
           S5]
          Length = 675

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 217/676 (32%), Positives = 356/676 (52%), Gaps = 22/676 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +S  + VG + +  LSK+            DLL++ P  +        +++ SE   V +
Sbjct: 3   VSYLKKVGPRRAALLSKL------GVETISDLLWHLPRDYQQYVRC--LAQASEGDQVLL 54

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G I    +   +   PYK +L    GE+ L +F      ++  F  G  +T+ G+++  
Sbjct: 55  HGTIVSC-TVPFKP--PYKAVLLTDEGEVDLTWFSGARTYIQATFAPGESLTIEGQLRFF 111

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEK 191
           + R  + HP      +       I  +Y L   LS  + + I  E  +  L    E +  
Sbjct: 112 RQRPGITHPKVATATADSD----IMPLYPLTENLSQKMLQDIFTENRAAILDATEEVLPP 167

Query: 192 DLLQKKSFPSIAEAFNIIHNPRK---AKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +L+Q+   P + E+   +H P     A      S   +RL ++E+   ++   L+    +
Sbjct: 168 ELVQRYHLPGLRESLAALHYPSSRELAALKTGLSRYHKRLIFEEIFLHELGRALVSYAQR 227

Query: 249 KEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +  GI I++    +A ++ R + F+ T+ Q++ +++I QD++    M R+LQGDVGSGKT
Sbjct: 228 QRFGIAIDISVDTMADELTRRLGFTLTEGQQAVVQEIQQDLAASQPMNRLLQGDVGSGKT 287

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VAL AMA     G QA+++AP  +LAQQHY    +        VE++ G++ +  + + 
Sbjct: 288 AVALYAMAGVTTKGYQALLLAPTEVLAQQHYTLFARILDGL-CQVELLCGSLSKKQKDQR 346

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
              I  G A IIIGTHAL Q+ I +++L L ++DEQHRFGV+QR    +     + L M+
Sbjct: 347 RAAIHEGAADIIIGTHALLQEDISFHRLGLSVIDEQHRFGVEQRAVFARNNPGVNQLYMS 406

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL LT   D+ +S +   P GR+P++T+ +   R  ++ + ++ VL +G + Y 
Sbjct: 407 ATPIPRTLALTMYADMALSSLKTLPVGRQPVQTLFLGSARQKQLHQEIEQVLQQGLQVYI 466

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P IEE ++ +  +    +           + ++HGRM    K+ VM+ F  G  ++L+
Sbjct: 467 VAPLIEESEKVDLENASRIYEQYRVQLAPHGVDLLHGRMGAEAKQQVMERFGRGETQVLV 526

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG+D   AS+++I + E FGL+QLHQLRGRVGRG     CI      + + S  
Sbjct: 527 STTVIEVGVDYPRASLMVIYHPERFGLSQLHQLRGRVGRGSHPGRCIFFAPGQIGRESRE 586

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL VL ++ DGF IA++DL+ R  G++ G++Q G+P FL+A P       E AR + + I
Sbjct: 587 RLQVLVDSTDGFYIAQKDLEIRGPGQLFGMRQWGIPSFLVADPIRDVKAWEFARDEVRAI 646

Query: 667 LTQDPDLTSVRGQSIR 682
           L +DP L +     +R
Sbjct: 647 LARDPALNAREHARLR 662


>gi|297622549|ref|YP_003703983.1| ATP-dependent DNA helicase RecG [Truepera radiovictrix DSM 17093]
 gi|297163729|gb|ADI13440.1| ATP-dependent DNA helicase RecG [Truepera radiovictrix DSM 17093]
          Length = 762

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 231/683 (33%), Positives = 370/683 (54%), Gaps = 23/683 (3%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +    K+          + DLLFY+P  + DR   P    + E+   T+ G I+   + +
Sbjct: 93  AQAPKKLAPL---GLKTYRDLLFYYPKRYEDRRALPHFGALREQESATVVGTITGRKATK 149

Query: 84  LQKRRPY-KILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
            +      +  L D  G  +T ++F +    L+   F G+++ VTGK+K+    + +   
Sbjct: 150 SRSGMVVTRAFLEDAHGGRLTAVWFNQ--PWLEKSLFPGQRVIVTGKVKRRGRLVELSVA 207

Query: 142 HYIFHNS-QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200
           H+   +  + ++   I  VY+   GLS    ++ +   L  L V+P+ + + ++++    
Sbjct: 208 HFEIDDDSESLSAGRIVGVYAATQGLSQAYVRRAVHRLLGALGVIPDHLPRSVVERFGLL 267

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260
            +  A   +H P      E  + A  RL +DE L  ++ +LL R      +G    V+  
Sbjct: 268 PLDAALREVHFPTSE---EGLAAALRRLKFDEFLFLELRVLLNR--DTTLLGKRFTVKRS 322

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
             ++   ++PF+ T +Q   + +IL DM+   +M R+LQGDVGSGKT VA  A+  AV+ 
Sbjct: 323 DLERFAASLPFALTGAQRRVLDEILGDMAAPKQMARLLQGDVGSGKTAVAAAAIYVAVQN 382

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G QA +MAP  ILA+QHY  + +Y     +  ++  G+     RR+A ER++  Q  + +
Sbjct: 383 GYQAALMAPTEILARQHYLNLIQYLYPLGVECDLFIGSAGSRERREARERLSASQTDLAV 442

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTHAL Q+ + +  L L ++DE+HRFGV+QR +L      P VL+M+ATPIPR+L LT  
Sbjct: 443 GTHALIQEGVTFRNLGLAVIDEEHRFGVEQRRRLLSG--NPDVLVMSATPIPRSLALTYY 500

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           GD+++S I E P GRK ++T ++   R  +V       + +G++ Y + P IEE +    
Sbjct: 501 GDLELSVIDELPPGRKGVQTRLVSDARRRDVYRFAWSEIKKGRQVYLVTPLIEESEAEVM 560

Query: 501 ------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                   + E   +L       + ++HG+M+  +K+ VM+ F+     LL++TTVIEVG
Sbjct: 561 SEIVSATKMFEDLQALMPEAC-RLGLLHGKMTGPEKDEVMERFRRHEFDLLVSTTVIEVG 619

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+ +AS++IIENAE FGL+QLHQLRGRVGRGE  S CIL+     SK +  RLSV++  
Sbjct: 620 VDIPNASVMIIENAERFGLSQLHQLRGRVGRGEHESFCILVAGDR-SKRTQHRLSVIEKH 678

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            DGF+IAE+DL+ R  GE+ G +QSGMP  ++        L+E +R+ AK +L  DP L 
Sbjct: 679 TDGFVIAEKDLELRGPGELKGTRQSGMPDLVLGDLSKDTELIERSRELAKKMLAADPKLE 738

Query: 675 SVRGQSIRILLYLYQYNEAFQFI 697
           +     +R  L       AF+ I
Sbjct: 739 APWATRLREELKRRSRAVAFREI 761


>gi|78184817|ref|YP_377252.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9902]
 gi|78169111|gb|ABB26208.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9902]
          Length = 850

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 236/704 (33%), Positives = 379/704 (53%), Gaps = 33/704 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  +GVG K +  L+ +      +  R      ++P   +D     +I  +    
Sbjct: 151 LESPITRIKGVGPKLASRLASLNLLLVKDLLR------HYPRDHVDYSAMRRIEALVAGE 204

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFF-----YRKTEMLK---NVF 117
             TI   I + + F   +     IL   L D TG + +  F     +     LK    ++
Sbjct: 205 TATIVATIRRCNGFVSPRNPNLAILELQLQDPTGRLKVTRFLAGKRFSSQAYLKGQQRLY 264

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFK 172
             G  + V+G +K     +    P      +     +  +   +  VY+L  G+  D F+
Sbjct: 265 PAGASVAVSGLVKDGAYGLSFQDPLIEVLENPTSPVKSASIGRLLPVYALTEGVGADRFR 324

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            +I + L       E + + L +     S++EA   +H P+     +     R RL +DE
Sbjct: 325 SLIEQVLPLTEQWIEPLPEPLRKTFGLLSVSEALKALHAPKDRTTLDR---GRHRLVFDE 381

Query: 233 LLAGQIALLLMRKQFKKEIGIPI---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
            L  Q+ LL  R+  +   G  +        + Q     + F  T +Q+  +++I  D++
Sbjct: 382 FLLLQLGLLRRRQALRSRPGPELGLLPSSQGLVQDFKDLLSFQFTDAQQRVLREIEADLA 441

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           Q   M R++QGDVGSGKT+VA+ A+ + + +G Q  +MAP  +LA+QH+  +  +     
Sbjct: 442 QSKPMARLVQGDVGSGKTVVAIAALLSTIASGWQGALMAPTEVLAEQHHRNLCHWFPQLH 501

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           I VE++TG+ P+  RR+ L+ +A G   +++GTHAL +D + + +L LV+VDEQHRFGV 
Sbjct: 502 ITVELLTGSTPRPRRRQLLDDLASGSLKLLVGTHALLEDPVVFERLGLVVVDEQHRFGVH 561

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PIKT ++   + +
Sbjct: 562 QRDRLLNKGLQPHLLTMTATPIPRTLALSVHGDLDVSQIDELPPGRTPIKTAMLSAGQRE 621

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSD 527
           +    ++  +S+G++AY + P +EE ++   RS VE    L         + ++HGR+S 
Sbjct: 622 KAYALIRDEVSKGQRAYVVLPLVEESEKLELRSAVEVHAELVSEVFPDLQVGLLHGRLSS 681

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
           ++K+ V+ SF +G C++L++TTV+EVG+DV +AS+++I++AE FGLAQLHQLRGRVGRG 
Sbjct: 682 VEKQEVLSSFSSGACQVLVSTTVVEVGVDVPEASVMMIDHAERFGLAQLHQLRGRVGRGA 741

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C LL +   +  +  RL VL  + DGF IAE DL+ R  G++LG +QSG+P   +A
Sbjct: 742 AASHC-LLINGSSNPLARQRLDVLVRSTDGFEIAEMDLRLRGPGQVLGTRQSGLPDLALA 800

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
                 ++LE AR  A+ +L  DP+L   R   +R LL   Q  
Sbjct: 801 SLADDAAVLEDARTAAQDLLRDDPNLE--RCPKLRALLDDQQRR 842


>gi|89902448|ref|YP_524919.1| ATP-dependent DNA helicase RecG [Rhodoferax ferrireducens T118]
 gi|89347185|gb|ABD71388.1| ATP-dependent DNA helicase RecG [Rhodoferax ferrireducens T118]
          Length = 747

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 245/751 (32%), Positives = 370/751 (49%), Gaps = 93/751 (12%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P    PL          G + +  L K+         R IDL  + P  + D     ++S
Sbjct: 12  PQLPKPLT---------GPQKA--LRKL------GLERAIDLALHLPLRYEDETRIERLS 54

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
           E+ E  +  + G ++ H   +L   R   + L+DGT    L FF       K     G +
Sbjct: 55  EVREGEVAQVEGVVT-HCEVKLSGHRQLLVTLDDGTDTCLLRFFTFYPSSQK-ALAVGNR 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           I V G++K     + M+HP +     +      +  +Y    GL     ++ +   ++R 
Sbjct: 113 IRVRGEVKGGFGGLTMMHPAFKSAGGELAV--ALTPIYPTVAGLPQAYLRRAVQGGVARA 170

Query: 183 PVLPEWIEKDLLQKKSF-PSI--AEAFNIIHNPRKAKDF----EWTSPARERLAYDELLA 235
             L + +  + L +    PS     A   +HNP          + + PA +RL  +ELLA
Sbjct: 171 E-LSDTVPLENLCEIGLQPSWNMRNALLFLHNPTPEVALATLQDHSHPAWQRLKAEELLA 229

Query: 236 GQIALLLMRKQF------------------------KKEIGIPINVEGKIAQKILRNIPF 271
            Q++ L  +++                         +++  +   + G +  ++L  +PF
Sbjct: 230 QQLSQLQAKRERARLRAPVLHSQALDDLVDDAHAAGRRDARLKPGLPGSLRNRLLATLPF 289

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T +Q     +I +D+++   M R+LQGDVGSGKT+VA +A A  ++AG Q  +MAP  
Sbjct: 290 QLTAAQHRVSAEIARDLARPVPMHRLLQGDVGSGKTVVAALAAAICIDAGWQCALMAPTE 349

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA QH+  +  + +   I V  +TG+     RR+ L  IA G+A ++IGTHA+ QD +Q
Sbjct: 350 ILATQHFAKLVSWLEPLGIRVAWLTGSQKAKERREMLALIASGEAGLVIGTHAVIQDKVQ 409

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT-------------------------------- 419
           +  L L I+DEQHRFGV QRL L  K +                                
Sbjct: 410 FKNLALAIIDEQHRFGVAQRLALRSKLSAQTDHPELVEGPAAASSLRQAQDQPSSVRTVG 469

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH+L+MTATPIPRTL ++   D+D+S I E P GR PI T ++   R +EVI R++  
Sbjct: 470 LEPHLLMMTATPIPRTLAMSYYADLDVSTIDELPPGRTPIITKVVNDARREEVIARIRAQ 529

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           L  G++ YW+CP IEE +  +  +  E    L      + + ++H RM   +K++VM  F
Sbjct: 530 LDAGRQIYWVCPLIEESEALDLSNATETHAQLSAALPGAMVGLLHSRMPVAEKKAVMSLF 589

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G   LL++TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY 
Sbjct: 590 TSGRMGLLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYS 649

Query: 598 ----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
               P LS+ +  RL  +  T DGF IA  DL+ R  GE LG +QSG      A      
Sbjct: 650 TGDAPRLSETARARLKAMAETHDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLATDT 709

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           +LL+ AR+ A  +L Q P L       +R L
Sbjct: 710 ALLQWARQLAPVMLDQHPALA--ERHVLRWL 738



 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 65/437 (14%), Positives = 137/437 (31%), Gaps = 56/437 (12%)

Query: 179 LSRLPVLPEWI--EKDLLQKKSFP-SIAEAFNIIHNPRKAKDFEWTSPARE--RLAYDEL 233
           L  +P LP+ +   +  L+K     +I  A ++          E  S  RE      + +
Sbjct: 8   LPTVPQLPKPLTGPQKALRKLGLERAIDLALHLPLRYEDETRIERLSEVREGEVAQVEGV 67

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK---------DI 284
           +      L   +Q        + ++      +LR   F P+   + A+          ++
Sbjct: 68  VTHCEVKLSGHRQLL------VTLDDGTDTCLLRFFTFYPSS--QKALAVGNRIRVRGEV 119

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI------------------ 326
                    M    +     G+  VAL  +   V    QA +                  
Sbjct: 120 KGGFGGLTMMHPAFKS--AGGELAVALTPIYPTVAGLPQAYLRRAVQGGVARAELSDTVP 177

Query: 327 ---MAPIGILAQQHYEFIKKYTQNTQIIVEIIT---GNMPQAHRRKALERIAHGQAHIII 380
              +  IG+    +      +  N    V + T    + P   R KA E +A   + +  
Sbjct: 178 LENLCEIGLQPSWNMRNALLFLHNPTPEVALATLQDHSHPAWQRLKAEELLAQQLSQLQA 237

Query: 381 GT-HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
               A  +  + + + +  +VD+ H  G +          +    L+   P   T     
Sbjct: 238 KRERARLRAPVLHSQALDDLVDDAHAAGRRDARLKPGLPGSLRNRLLATLPFQLTAAQHR 297

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           +       +       + ++  +     +   +    + +  G +   + P      E  
Sbjct: 298 VSAEIARDLARPVPMHRLLQGDVGSGKTVVAALAA-AICIDAGWQCALMAPT-----EIL 351

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT-VIEVGIDVV 558
                 +  S  E     +A + G     ++  ++    +G   L+I T  VI+  +   
Sbjct: 352 ATQHFAKLVSWLEPLGIRVAWLTGSQKAKERREMLALIASGEAGLVIGTHAVIQDKVQFK 411

Query: 559 DASIIIIENAEHFGLAQ 575
           + ++ II+    FG+AQ
Sbjct: 412 NLALAIIDEQHRFGVAQ 428


>gi|19704981|ref|NP_602476.1| ATP-dependent DNA helicase recG [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19712887|gb|AAL93775.1| ATP-dependent DNA helicase recG [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 689

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/650 (34%), Positives = 357/650 (54%), Gaps = 14/650 (2%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ-K 86
            ++ N  +       DL++Y P ++ DR    KI E+     V +   +    +  ++  
Sbjct: 23  KQLSNLKSLGINTVYDLIYYFPRAYDDRTNIKKIGELKFNEYVVLKATVMSAVNLTVRSG 82

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IF 145
           ++  K ++ DGTG + +L+F      +K     G +    G+ KK      +++P Y +F
Sbjct: 83  KKIVKAMVTDGTGIMEILWF--GMPYIKKSLKIGEEYLFIGQTKKS-AVFQLINPEYKLF 139

Query: 146 HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAE 204
              Q V+   I  +YS    ++ +  +K++ + L + L    E I K L+++        
Sbjct: 140 SGQQKVSENEILPIYSSNKNITQNSLRKLVEKFLVNFLNYFEENIPKKLIKEYKIMERKS 199

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG--KIA 262
           A   IH P   K+ E     + R A +ELL  ++ +L  R   +        VEG  +  
Sbjct: 200 AIKNIHYPVSMKEIEEA---KRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKV 256

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++ L  + F+ T +Q+  IK+I  ++S    + R++QGDVGSGKT+VA++ +    E G 
Sbjct: 257 REFLSQLTFNLTNAQKKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGY 316

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  +MAP  ILA QHY  IK+  +   + VE++T ++    + + L+ IA+G   I+IGT
Sbjct: 317 QGALMAPTEILANQHYLGIKERLEQIGLRVELLTSSIKGKKKNEILDGIANGDIDIVIGT 376

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H+L +D + + KL L+++DEQHRFGV QR KL +K    ++L+M+ATPIPR+L L+  GD
Sbjct: 377 HSLIEDDVIFKKLGLIVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGD 436

Query: 443 IDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           +D+S I E P GR PIKT  I  +  ++++   +   +++G +AY++ P IE   +   +
Sbjct: 437 LDLSIIDELPPGRTPIKTKWIANDEDLEKMYNFIYKKVNDGNQAYFVAPLIETSDKMALK 496

Query: 502 SVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           SV +    +   F    I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  +
Sbjct: 497 SVDKVSEEIERKFSNKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPAS 556

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           +I+ I NAE FGL+ LHQLRGRVGRG + S C L+ +   ++NS  RLS+++ TEDGF I
Sbjct: 557 TIMTIYNAERFGLSALHQLRGRVGRGSKQSYCFLISNST-TENSKQRLSIMEETEDGFRI 615

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           AEEDLK R  GEI G++QSG               +++ R +    L + 
Sbjct: 616 AEEDLKLRNSGEIFGLRQSGFSDLKFIDIIYDVKTIKLVRDECIKYLKEH 665


>gi|271969202|ref|YP_003343398.1| ATP-dependent DNA helicase RecG [Streptosporangium roseum DSM
           43021]
 gi|270512377|gb|ACZ90655.1| ATP-dependent DNA helicase RecG [Streptosporangium roseum DSM
           43021]
          Length = 723

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 221/718 (30%), Positives = 374/718 (52%), Gaps = 50/718 (6%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
            K +  L  +++          DLL ++P  + +R     + ++  +  VT+ G +++  
Sbjct: 14  PKTAKLLESVLDL-----RTVGDLLRHYPRRYAERGELTDLDDLQVDEHVTVVGEVTRAM 68

Query: 81  SFQLQKRRP--YKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL----K 133
              ++ +     ++ + DG   +I L FF + + + ++    G +    GK+       K
Sbjct: 69  RKPMRNKGGTWLEVEVVDGRRSKIYLSFFGKTSHIAESRLRPGARGMFAGKVGAFGQGDK 128

Query: 134 NRIIMVHPHYIFHNSQDVNFPL----IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            R  + HP +   +  +         +  +Y     ++    ++ +   L  +  L + +
Sbjct: 129 RRWQLSHPEFEMFDETEAGAEEFAAALVPIYPAGKDVTPWAIRRALGVVLDTMGPLDDPL 188

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             +L  +   P +AEA   +H PR   D       R+RL +DE    Q  LL  R     
Sbjct: 189 PAELRARHKLPGLAEALLAVHRPRDHGDVTRA---RKRLKFDEAFLLQAVLLQRRMAAAS 245

Query: 250 EIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
               P    G        R +PF  T+ Q+S  +++  D++  + M R+LQG+VG+GKT+
Sbjct: 246 WPATPRPPRGDGLLADFDRRLPFRLTEGQQSVGEEVSADLALAHPMHRLLQGEVGAGKTV 305

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-------TQNTQIIVEIITGNMPQ 361
           VAL AM   V+AGGQAV++AP  +LAQQH+  I                +V ++TG++  
Sbjct: 306 VALRAMLQVVDAGGQAVLLAPTEVLAQQHHRSISAMLGDLAAGGMFGGTVVALLTGSLGA 365

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-- 419
           A RR A+   A G A I++GTHA+ Q+ +Q+  L LV+VDEQHRFGV+QR  L +KA   
Sbjct: 366 AARRSAMLDAASGAAGIVVGTHAVLQERVQFADLGLVVVDEQHRFGVEQRDALREKAGGG 425

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERL 475
            PHVL+MTATPIPRT+ +T  GD+ +S +++ P+GR PI T ++P       +D    RL
Sbjct: 426 RPHVLVMTATPIPRTVAMTVFGDLTVSTLSQLPSGRAPITTHVVPAAEKPHFLDRTWTRL 485

Query: 476 KVVLSEGKKAYWICPQI------------EEKKESNFRSVVERFNSLHEH--FTSSIAII 521
           +  +  G++AY +CP+I            ++ +     +V++    L E        A++
Sbjct: 486 REEVGLGRQAYIVCPRIGDLEGDEGDLSKDDDERRPPLAVLDVAQMLSEGPLHGLRTAVL 545

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG++   +K++VM +F  G   +++ATTVIEVG+DV ++S+++I +A+ FG++QLHQLRG
Sbjct: 546 HGKLPPEEKDAVMRAFTRGETDVMVATTVIEVGVDVPNSSVMVIMDADRFGVSQLHQLRG 605

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           RVGRG     C+L+   P    +  RL  +  T DGF ++  DL+QR+EG++LG+ QSG 
Sbjct: 606 RVGRGGLPGLCLLVTDSPGGTPARQRLDAVAATLDGFELSRVDLEQRREGDVLGVAQSGR 665

Query: 642 P-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
                + Q    + ++  AR+DA+ +LT DPDL       +R+ +     +E  +++ 
Sbjct: 666 RSSLKLLQLLRDEDVIHAARQDAEAMLTADPDLA--EHAVLRMEIDRLLADERAEYLE 721


>gi|296329235|ref|ZP_06871736.1| DNA helicase RecG [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296153591|gb|EFG94408.1| DNA helicase RecG [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 689

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/650 (34%), Positives = 357/650 (54%), Gaps = 14/650 (2%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ-K 86
            ++ N  +       DL++Y P ++ DR    KI E+     V +   +    +  ++  
Sbjct: 23  KQLSNLKSLGINTVYDLIYYFPRAYDDRTNIKKIGELKFNEYVVLKATVMSAVNLTVRSG 82

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IF 145
           ++  K ++ DGTG + +L+F      +K     G +    G+ KK      +++P Y +F
Sbjct: 83  KKIVKAMVTDGTGIMEILWF--GMPYIKKSLKIGEEYLFIGQTKKS-AVFQLINPEYKLF 139

Query: 146 HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAE 204
              Q V+   I  +YS    ++ +  +K++ + L + L    E I K L+++        
Sbjct: 140 SGQQKVSENEILPIYSSNKNITQNSLRKLVEKFLVNFLNYFEENIPKKLIKEYKIMERKS 199

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG--KIA 262
           A   IH P   K+ E     + R A +ELL  ++ +L  R   +        VEG  +  
Sbjct: 200 AIKNIHYPVSMKEIEEA---KRRFAIEELLILELGILKNRFIIENSNSKNYEVEGKKEKV 256

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++ L  + F+ T +Q+  IK+I  ++S    + R++QGDVGSGKT+VA++ +    E G 
Sbjct: 257 REFLSQLTFNLTNAQKKVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAENGY 316

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q  +MAP  ILA QHY  IK+  +   + VE++T ++    + + L+ IA+G   I+IGT
Sbjct: 317 QGALMAPTEILANQHYLGIKERLEQIGLRVELLTSSIKGKKKNEILDGIANGDIDIVIGT 376

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           H+L +D + + KL L+++DEQHRFGV QR KL +K    ++L+M+ATPIPR+L L+  GD
Sbjct: 377 HSLIEDDVIFKKLGLIVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSIYGD 436

Query: 443 IDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           +D+S I E P GR PIKT  I  +  ++++   +   +++G +AY++ P IE   +   +
Sbjct: 437 LDLSIIDELPPGRTPIKTKWIANDEDLEKMYNFIYKKVNDGNQAYFVAPLIETSDKMALK 496

Query: 502 SVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           SV +    +   F    I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  +
Sbjct: 497 SVDKVSEEIERKFSNKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPAS 556

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           +I+ I NAE FGL+ LHQLRGRVGRG + S C L+ +   ++NS  RLS+++ TEDGF I
Sbjct: 557 TIMTIYNAERFGLSALHQLRGRVGRGSKQSYCFLISNST-TENSKQRLSIMEETEDGFRI 615

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           AEEDLK R  GEI G++QSG               +++ R +    L + 
Sbjct: 616 AEEDLKLRNSGEIFGLRQSGFSDLKFIDIIYDVKTIKLVRDECIKYLKEH 665


>gi|116070692|ref|ZP_01467961.1| ATP-dependent DNA helicase RecG [Synechococcus sp. BL107]
 gi|116066097|gb|EAU71854.1| ATP-dependent DNA helicase RecG [Synechococcus sp. BL107]
          Length = 773

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/711 (33%), Positives = 382/711 (53%), Gaps = 35/711 (4%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           RPS    L +P++  +GVG K +  L+ +      +  R      ++P   +D     +I
Sbjct: 69  RPSL--DLESPITRIKGVGPKLASRLASLNLLLVKDLLR------HYPRDHVDYSSMRRI 120

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFF-----YRKTEML 113
             +      TI   I + + F   +     IL   L D TG + +  F     +     L
Sbjct: 121 EALVAGETATIVATIRRCNGFVSPRNPNLAILELQLQDPTGRLKVTRFLAGKRFSSQAYL 180

Query: 114 K---NVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTG 165
           K    ++  G  + V+G +K     +    P      +     +  +   +  VY+L  G
Sbjct: 181 KGQQRLYPAGASVAVSGLVKDGAYGLSFQDPLIEVLENPSSPVKSASIGRLLPVYALTEG 240

Query: 166 LSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225
           +  D F+ +I + L       E + + L Q     S++EA   +H P+     +     R
Sbjct: 241 VGADRFRGLIEQVLPLTEQWTEPLPEALRQTFDLLSVSEALQALHAPKDRTTLDR---GR 297

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPI---NVEGKIAQKILRNIPFSPTKSQESAIK 282
            RL +DE L  Q+ LL  R+  +   G  +        + Q     + F  T++Q+  + 
Sbjct: 298 HRLVFDEFLLLQLGLLRRRQALRSRPGPELGLLPSTQGLVQDFRDLLSFQFTEAQQRVLH 357

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I  D++Q   M R++QGDVGSGKT+VA+ A+ + + +G Q  +MAP  +LA+QH+  + 
Sbjct: 358 EIEADLAQSKPMARLVQGDVGSGKTVVAIAALLSTIASGWQGALMAPTEVLAEQHHRNLC 417

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
            +     I VE++TG+ P+  RR+ L+ +A G   +++GTHAL +D + + +L LV+VDE
Sbjct: 418 HWLPQLHITVELLTGSTPRPRRRQLLDDLASGSLKLLVGTHALLEDPVVFERLGLVVVDE 477

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           QHRFGV QR +L  K   PH+L MTATPIPRTL L+  GD+D+S+I E P GR PIKT +
Sbjct: 478 QHRFGVHQRDRLLNKGLQPHLLTMTATPIPRTLALSVHGDLDVSQIDELPPGRTPIKTAM 537

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAI 520
           +   + ++    ++  +S+G++AY + P +EE ++   RS VE    L         + +
Sbjct: 538 LSAGQREKAYALIRDEVSKGQRAYVVLPLVEESEKLELRSAVEVHAELVSEVFPDLQVGL 597

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGR+S ++K+ V+ SF +G C++L++TTV+EVG+DV +AS+++I++AE FGLAQLHQLR
Sbjct: 598 LHGRLSSVEKQEVLASFSSGACQVLVSTTVVEVGVDVPEASVMMIDHAERFGLAQLHQLR 657

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG   S C LL +   +  +  RL VL  + DGF IAE DL+ R  G++LG +QSG
Sbjct: 658 GRVGRGAAASHC-LLINGSSNPLARQRLDVLVRSTDGFEIAEMDLRLRGPGQVLGTRQSG 716

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           +P   +A      ++LE AR  A+ +L  DP+L   R   +R LL   Q  
Sbjct: 717 LPDLALASLADDAAVLEDARTAAQDLLRDDPNLE--RCPQLRALLDDQQRR 765


>gi|239818026|ref|YP_002946936.1| ATP-dependent DNA helicase RecG [Variovorax paradoxus S110]
 gi|239804603|gb|ACS21670.1| ATP-dependent DNA helicase RecG [Variovorax paradoxus S110]
          Length = 709

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 221/672 (32%), Positives = 361/672 (53%), Gaps = 34/672 (5%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ 85
            L K+         R ID   Y P  + D     ++++  +  +  + G +++      +
Sbjct: 34  ALRKL------GLVRDIDFALYLPMRYEDETRIVRLADTRDGDMAQVEGVVTECEVV-FR 86

Query: 86  KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145
            RR     ++DG+    L FF       K     G ++ V G+++       M+HP    
Sbjct: 87  PRRQLIATIDDGSDTCQLRFFNFYPSQQKQ-LAVGARVRVRGEMRGGFVGRQMMHPT--V 143

Query: 146 HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEA 205
             +       +  VYS   GL   + ++ +   L+R  VL E I   +  + ++  +  +
Sbjct: 144 KAAGTALPQALTPVYSTIAGLPQPVLRREVRSGLAR-AVLDETIPVQIGWRGAW-DLRSS 201

Query: 206 FNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEG 259
              +H P          + + PA +R+  +ELLA Q++ L  R  +  ++   +P + E 
Sbjct: 202 LTFLHYPTPDVAMATLEDHSHPAWQRIKAEELLAQQLSQLQARLERAAQRAPMLPSSAEP 261

Query: 260 KI---AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +      ++L  +PF  T +Q+   ++I +D+ ++  M R+LQGDVGSGKT+VA +A A 
Sbjct: 262 QASSLHAQLLAVLPFGLTGAQQRVGEEITRDLGREIPMHRLLQGDVGSGKTVVAALAAAR 321

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT----QIIVEIITGNMPQAHRRKALERIA 372
            ++AG Q  +MAP  ILA QH+  +  +         + V  +TG+  +  R      + 
Sbjct: 322 CIDAGFQCALMAPTEILAAQHFGKLVGWLDPLLAERGLRVAWLTGSQKKKERDAMSAAVE 381

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP---HVLLMTAT 429
            G+A ++IGTHA+  + +++  L L I+DEQHRFGV QRL L  KA      H+L+M+AT
Sbjct: 382 SGEAALVIGTHAVISEKVRFKNLALAIIDEQHRFGVAQRLALRGKAVGHLEPHLLMMSAT 441

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL ++   D+D+S + E P GR PI T ++  +R DEVI+R++  +++G++ YW+C
Sbjct: 442 PIPRTLAMSYYADLDVSTLDELPPGRTPIVTKLVADHRRDEVIDRIQAQIAQGRQVYWVC 501

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           P IEE +  + R+  E  + L +   +  ++ ++H RM   +K++VM +F     ++L++
Sbjct: 502 PLIEESEAVDLRNATETRDELADALGAAVNVGLLHSRMPTAEKQAVMAAFTANEIQVLVS 561

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS----KN 603
           TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY P  S    + 
Sbjct: 562 TTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYAPGDSGRVGEA 621

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL  +  T DGF IA  DL+ R  GE LG +QSG P    A       LL+ AR+ A
Sbjct: 622 ARARLKAMAETSDGFEIARRDLEIRGPGEFLGARQSGAPLLRFADLSTDTMLLDWARELA 681

Query: 664 KHILTQDPDLTS 675
             +L + P+L  
Sbjct: 682 PLMLDKHPELAQ 693


>gi|254468480|ref|ZP_05081886.1| ATP-dependent DNA helicase RecG [beta proteobacterium KB13]
 gi|207087290|gb|EDZ64573.1| ATP-dependent DNA helicase RecG [beta proteobacterium KB13]
          Length = 682

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 232/656 (35%), Positives = 362/656 (55%), Gaps = 24/656 (3%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
                 L+K+      N   + DLL + P  + DR     I ++ +     + G +    
Sbjct: 7   PHQEKLLNKL------NIQNWFDLLLHLPVRYEDRTKITDIQDLKDNAFSQVLGKVIDVD 60

Query: 81  SFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
               + +R   + L DG G +I+L + +      K  F  G+ +   G ++K      ++
Sbjct: 61  IV-FRGKRNLVVHLEDGCGDQISLRYLHFYPNQ-KAQFKVGKYVLAAGNVRKNLITTEII 118

Query: 140 HPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           HP     N+Q+V  P  +  +YS+ +GL      ++I +AL       + +  ++L  KS
Sbjct: 119 HPETAVFNAQEVVLPENLTPIYSVTSGLGQKNIYRLINKALEFASS-QKLLNFEILNHKS 177

Query: 199 FPS---IAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
                 + ++   IH P K  D +    +++   + + Y ELL+ Q+ L L + +FK + 
Sbjct: 178 KTDGVNLLDSLYAIHQPNKNCDLQELNYFSTIFHQHIKYAELLSQQLYLKLSKDEFKNQK 237

Query: 252 GIPINVEGKIAQK-ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
                ++    +  IL ++PF  T+SQE  I +I  DMS    M R+LQGDVGSGKT+VA
Sbjct: 238 SKIFTLKNNNLKDSILNSLPFKLTESQEQVIHEIESDMSSGKVMHRLLQGDVGSGKTIVA 297

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           +I     +    Q   MAP  ILA QH++ IK+  Q+T + VE++TG++    R + ++ 
Sbjct: 298 IIVSTLILNNEYQVAFMAPTEILANQHFKKIKELFQSTDVRVELLTGSIKGRKRNEIIDD 357

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL----TQKATAPHVLLM 426
           I  G+ H +IGTHALFQD+I + KL L I+DEQHRFGV+QRL L     +    PH+L+M
Sbjct: 358 IESGKIHYVIGTHALFQDNIYFKKLGLCIIDEQHRFGVKQRLDLMSKGKKDGHQPHLLMM 417

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL ++   D+++S ++E P  R PI T ++  +R  E+++ LK  L+   + Y
Sbjct: 418 SATPIPRTLSMSYFADLEVSTLSELPKDRVPIVTKLVRDSRRKELMQMLKNELNNDNQIY 477

Query: 487 WICPQIEEKKESNFRSVVERFNS-LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           W+CP +EE ++      V  +   +       + IIHGRM D +K+ VM  +     KLL
Sbjct: 478 WVCPLVEESEKLTLSDAVNTYEEFISFIPKEMVGIIHGRMKDQEKDEVMSKYLQKKIKLL 537

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVG+DV +AS ++IE+AE  GL+QLHQLRGRVGRG + S+CIL++   LS+ + 
Sbjct: 538 VATTVIEVGVDVPNASFMVIEHAERMGLSQLHQLRGRVGRGAKKSTCILIFKENLSELAK 597

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            RL ++   +DGFLIAE DLK R  GE++G +QSG+P   IA       L++    
Sbjct: 598 QRLKIIYENQDGFLIAENDLKIRGPGEMIGTRQSGVPGLRIANLVEDADLVKEVSD 653


>gi|170756283|ref|YP_001782038.1| ATP-dependent DNA helicase RecG [Clostridium botulinum B1 str.
           Okra]
 gi|169121495|gb|ACA45331.1| ATP-dependent DNA helicase RecG [Clostridium botulinum B1 str.
           Okra]
          Length = 679

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/681 (33%), Positives = 375/681 (55%), Gaps = 24/681 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFI--DRHYRPKISEISEE 67
           ++P++T +GVG K    L K            +DLL Y P  +   D + + K+      
Sbjct: 4   YSPITTLKGVGPKTKEQLEK------CMIFNIMDLLLYFPRDYEFIDNYSKDKLLS---- 53

Query: 68  RIVTITGYISQH-SSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           + V I   +       + +  +    I+ NDG   I   +F +    +KN F  G +  +
Sbjct: 54  KKVIIKVQVENIKRDIRTRTGKILTTIIFNDGEKAIVGSWFNQ--PYIKNYFKIGEEYVL 111

Query: 126 TGKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
            G +K+ +  + + +   + +  +++V    I   Y L   L  +L  K++   L+ +  
Sbjct: 112 QGSLKEYRGNLTINNAQILKNKCAEEVEERKIIPKYPLKGDLKNNLLIKLVDSVLTNID- 170

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E +   L++K  F S+ ++   IH P   K+ E +     RL + ELLA  + +  ++
Sbjct: 171 IGENLPIWLIEKYKFLSLDKSIRTIHKPENQKELEESI---RRLKFQELLAYCLKIAFLK 227

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +  +        +  +    ++  +PF  T +Q   +++I +D  ++  M R+LQGDVGS
Sbjct: 228 EYLETATEGISFIVSEEINNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMNRLLQGDVGS 287

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++ALI++   ++ G Q V++AP  ILA QHYE   K  ++  + +E++ G++  + +
Sbjct: 288 GKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELLIGSIKVSSK 347

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           ++  E++  G+  +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+  K  +   L
Sbjct: 348 KEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKMLNKGKSVDTL 407

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPR+L L+  GD+D+S I E P GR+ I T  +  +    V       ++ G++
Sbjct: 408 VMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFALKEINNGRQ 467

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP +EEK+E N  SV + +N L   +   +  AI+HG+M   +K+++M  FK G  
Sbjct: 468 VYIVCPLVEEKEELNLNSVEKLYNDLKGEYFKEVEIAILHGKMKGKEKDTIMKDFKEGKI 527

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CIL+       
Sbjct: 528 KALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCILIARVKNDI 587

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++K++ DGFL+AEEDLK R  GEI G KQ G    L+A       LL IA  +
Sbjct: 588 I-RKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIEDIHLLRIANME 646

Query: 663 AKHILTQDPDLTSVRGQSIRI 683
           +K I+  + +  +   + ++I
Sbjct: 647 SKKIIDSNNEEDNKIKEEVKI 667


>gi|145589967|ref|YP_001156564.1| ATP-dependent DNA helicase RecG [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048373|gb|ABP35000.1| ATP-dependent DNA helicase RecG [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 671

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 242/653 (37%), Positives = 354/653 (54%), Gaps = 25/653 (3%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEE---RIVTITGYISQHSSFQLQKRRPYKILLNDGTGE 100
           L  + PS + D      I E   +         G + ++     + RR   + + D T  
Sbjct: 3   LALHLPSRYEDETELLSIEEAIHQGRFSSAQTQGVVIRNQ-VLFRPRRQMVVTIEDETET 61

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           + L F        K +   G  I V G++++      MVHP     +S       +  VY
Sbjct: 62  LNLRFLNFYPSQQKQM-AVGSHIRVRGEVREGFQGSEMVHPTVKAVSSDTPLPASLTPVY 120

Query: 161 SLPTGLSVDLFKKIIVEAL-------SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
               G+S    +K +  AL       S     P  +  +LL    +P++ EA   +H P 
Sbjct: 121 PATAGVSQAAIRKAVNLALRDPSLQESLAEFFPHQLMSELLPSYDWPNLMEAITYLHQPP 180

Query: 214 KAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK----IAQKI 265
              +     E T PA  R+ ++ELLA QI+L       +       + E K    I   +
Sbjct: 181 ADANTQALLERTHPAWRRVQFEELLAQQISLKRAHAIRRGRQAPTFSKEIKKGLGIEAGL 240

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +PF  T +Q     +I  D++Q   M R+LQGDVGSGKT+VA +A A  ++ G QA 
Sbjct: 241 LAVLPFKLTAAQARVWLEIGHDLAQAFPMNRLLQGDVGSGKTVVAALAAAHVMDQGYQAA 300

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA+QHY  +K++ +   + +  +TG++    +R A E I  GQA +IIGTHAL
Sbjct: 301 VMAPTEILAEQHYLKMKEWFEPLGVKIAWLTGSLKAKEKRLAQEMIESGQAQLIIGTHAL 360

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLG 441
            Q+S+++ KL L ++DEQHRFGV+QRL++ Q+        H L+M+ATPIPRTL +T   
Sbjct: 361 IQESVRFAKLGLAVIDEQHRFGVRQRLEIQQRVGSELFYCHQLMMSATPIPRTLAMTYYA 420

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           D+D+S I E P GRKPI T ++  +R +EVI  L   L++G +AYW+CP IEE +    +
Sbjct: 421 DLDVSVIDELPPGRKPITTKVVKASRREEVISGLHSWLAKGLQAYWVCPLIEESEVLQLQ 480

Query: 502 SVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           + VE F  L +      + ++HGR+   +K +VM +FK    +LL+ATTVIEVG+DV +A
Sbjct: 481 TAVESFEQLTQALPGFKVGLVHGRLKSDEKAAVMAAFKANEIQLLVATTVIEVGVDVPNA 540

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           ++++IE+AE FG AQ+HQLRGRVGRG   S CIL+Y  PLS  +  RL  L+ T DGF+I
Sbjct: 541 ALMVIEHAERFGYAQIHQLRGRVGRGSADSVCILMYAEPLSMAAKERLQTLRETSDGFVI 600

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           AE DL  R  GE+LG KQSG         +    L+E+A+K A  +L    +L
Sbjct: 601 AERDLSLRGPGELLGAKQSGDAMLRFVDLQRDAWLIELAQKAADRLLADHREL 653


>gi|320530666|ref|ZP_08031712.1| ATP-dependent DNA helicase RecG [Selenomonas artemidis F0399]
 gi|320137074|gb|EFW29010.1| ATP-dependent DNA helicase RecG [Selenomonas artemidis F0399]
          Length = 688

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 224/653 (34%), Positives = 351/653 (53%), Gaps = 26/653 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   ++  RGVG + +  L ++            DLL Y+P ++ D+    +I+++    
Sbjct: 3   LEDNVNKVRGVGVQKAAALRRL------GIETVSDLLTYYPRAYEDQSRITRIADLRSGT 56

Query: 69  IVTITGYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             T+ G I        ++R       L+ DGTG    ++F ++   LK+   EGR+I +T
Sbjct: 57  RATVVGVIQTVVERPTRRRGFTVLTALIGDGTGYAQAVWFNQR--FLKSKLREGRRIFLT 114

Query: 127 GKIKKLKNR------IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL- 179
           GK               +    ++       +   I  +Y+   GL+    ++++  AL 
Sbjct: 115 GKADYAYGGGGQLALTQITSLEFLGAEESPASRLGILPIYAATEGLTQKQLRQMMAYALR 174

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
                L E +   +  +      A+AF  IH P++A++    S AR RLA++EL   Q  
Sbjct: 175 ETAENLTETLPDVVRTEYGLVRRADAFRRIHFPKRAEEL---SDARRRLAFEELYLIQCG 231

Query: 240 LLLMRKQF-KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           LL ++K+  + + GI     G     +L  +PF+ T+ Q++   ++ +DM     M R++
Sbjct: 232 LLALKKRSVESQRGIAHGENGVRVAAVLEALPFTLTEDQQTVWTEVARDMESPLPMRRLV 291

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT +AL+A+   VE+G Q   MAP  ILA+QHY+++++      I V  ++G 
Sbjct: 292 QGDVGSGKTAIALLALVKTVESGRQGAFMAPTEILARQHYDYLQELLTPLGIRVAFLSGR 351

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQK 417
           + +  R +    +A  +  I++GTHAL +D + +  L LV+ DEQHRFGV QR  L  + 
Sbjct: 352 LAKKARTETDAALAAHEVDIVVGTHALIEDHVAFAALGLVVTDEQHRFGVAQRSALEKKS 411

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRT+ LT  GD+D+S+I   P GR+ I+T +       ++   ++ 
Sbjct: 412 EVTPDVLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRRAIRTFLRTDAARAKIYAFVRK 471

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMD 535
            +  G++AY +CP+IE  +ES+  S  E ++ L           ++HGRM   DK++VM 
Sbjct: 472 EIESGRQAYVVCPRIEASEESDLPSAEEVYDELSRGVFRGIRCGLLHGRMKAADKDAVMR 531

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F     KLL++TTVIEVG++V +ASI+++E+AE FGLAQLHQLRGRVGRG   S CIL+
Sbjct: 532 DFYEDRIKLLVSTTVIEVGVNVPNASILVVEHAERFGLAQLHQLRGRVGRGAYASYCILI 591

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
                S     RL V++ T DGF +AEEDL+ R  G+  G  Q G+    IA 
Sbjct: 592 AGA--SAAQAERLKVIEQTSDGFRLAEEDLRLRGPGQFFGAMQHGLGDLKIAD 642


>gi|226949848|ref|YP_002804939.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A2 str.
           Kyoto]
 gi|226841536|gb|ACO84202.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A2 str.
           Kyoto]
          Length = 679

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 225/681 (33%), Positives = 375/681 (55%), Gaps = 24/681 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFI--DRHYRPKISEISEE 67
           ++P++T +GVG K    L K            +DLL Y P  +   D + + K+      
Sbjct: 4   YSPITTLKGVGPKTKEQLEK------CMIFNIMDLLLYFPRDYEFIDNYSKDKLLS---- 53

Query: 68  RIVTITGYISQH-SSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           + V I   +       + +  +    I+ NDG   I   +F +    +KN F  G +  +
Sbjct: 54  KKVIIKVRVENIKRDIRTRTGKILTTIIFNDGEKAIVGSWFNQ--PYIKNYFKIGEEYVL 111

Query: 126 TGKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
            G +K+ +  + + +   + +  +++V    I   Y L   L  +L  K++   L+ +  
Sbjct: 112 QGSLKEYRGNLTINNAQILKNKCAEEVEERKIIPKYPLKGDLKNNLLIKLVDSVLTNID- 170

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E +   L++K  F S+ ++   IH P   K+ E +     RL + ELLA  + +  ++
Sbjct: 171 IGENLPIWLIEKYKFLSLDKSIRTIHKPENQKELEESI---RRLKFQELLAYCLKIAFLK 227

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +  +        +  +    ++  +PF  T +Q   +++I +D  ++  M R+LQGDVGS
Sbjct: 228 EYLETATEGISFIVSEEINNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMNRLLQGDVGS 287

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++ALI++   ++ G Q V++AP  ILA QHYE   K  ++  + +E++ G++  + +
Sbjct: 288 GKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELLIGSIKVSSK 347

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           ++  E++  G+  +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+  K  +   L
Sbjct: 348 KEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKMLNKGKSVDTL 407

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPR+L L+  GD+D+S I E P GR+ I T  +  +    V       ++ G++
Sbjct: 408 VMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFALKEINNGRQ 467

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP +EEK+E N  SV + ++ L   +   +  AI+HG+M   +K+++M  FK G  
Sbjct: 468 VYIVCPLVEEKEELNLNSVEKLYDDLKGEYFKEVEIAILHGKMKGKEKDTIMKDFKEGKI 527

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CIL+       
Sbjct: 528 KALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCILIARVKNDI 587

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++K++ DGFL+AEEDLK R  GEI G KQ G    L+A       LL IA  +
Sbjct: 588 I-RKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIEDIHLLRIANME 646

Query: 663 AKHILTQDPDLTSVRGQSIRI 683
           +K I+  + +  +   + ++I
Sbjct: 647 SKKIIDSNNEEDNKIKEEVKI 667


>gi|322806762|emb|CBZ04331.1| ATP-dependent DNA helicase RecG [Clostridium botulinum H04402 065]
          Length = 679

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 225/681 (33%), Positives = 375/681 (55%), Gaps = 24/681 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFI--DRHYRPKISEISEE 67
           ++P++T +GVG K    L K            +DLL Y P  +   D + + K+      
Sbjct: 4   YSPITTLKGVGPKTKEQLEK------CMIFNIMDLLLYFPRDYEFIDNYSKDKLLS---- 53

Query: 68  RIVTITGYISQH-SSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           + V I   +       + +  +    I+ NDG   I   +F +    +KN F  G +  +
Sbjct: 54  KKVIIKVQVENIKRDIRTRTGKILTTIIFNDGEKAIVGSWFNQ--PYIKNYFKIGEEYVL 111

Query: 126 TGKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
            G +K+ +  + + +   + +  +++V    I   Y L   L  +L  K++   L+ +  
Sbjct: 112 QGSLKEYRGNLTINNAQILKNKCAEEVEERRIIPKYPLKGDLKNNLLIKLVDSVLTNID- 170

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E +   L++K  F S+ ++   IH P   K+ E +     RL + ELLA  + +  ++
Sbjct: 171 IGENLPIWLIEKYKFLSLDKSIRTIHKPENQKELEESI---RRLKFQELLAYCLKIAFLK 227

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +  +        +  +    ++  +PF  T +Q   +++I +D  ++  M R+LQGDVGS
Sbjct: 228 EYLETATEGISFIVSEEINNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMNRLLQGDVGS 287

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++ALI++   ++ G Q V++AP  ILA QHYE   K  ++  + +E++ G++  + +
Sbjct: 288 GKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELLIGSIKVSSK 347

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           ++  E++  G+  +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+  K  +   L
Sbjct: 348 KEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKMLNKGKSVDTL 407

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPR+L L+  GD+D+S I E P GR+ I T  +  +    V       ++ G++
Sbjct: 408 VMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFALKEINNGRQ 467

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP +EEK+E N  SV + ++ L   +   +  AI+HG+M   +K+++M  FK G  
Sbjct: 468 VYIVCPLVEEKEELNLNSVEKLYDDLKGEYFKEVEIAILHGKMKGKEKDTIMKDFKEGKI 527

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CIL+       
Sbjct: 528 KALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCILIARVKNDI 587

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++K++ DGFL+AEEDLK R  GEI G KQ G    L+A       LL IA  +
Sbjct: 588 I-RKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIEDIHLLRIANME 646

Query: 663 AKHILTQDPDLTSVRGQSIRI 683
           +K I+  + +  +   + ++I
Sbjct: 647 SKKIIDSNNEEDNKIKEEVKI 667


>gi|148380449|ref|YP_001254990.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. ATCC
           3502]
 gi|153931726|ref|YP_001384672.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. ATCC
           19397]
 gi|153935165|ref|YP_001388193.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. Hall]
 gi|148289933|emb|CAL84046.1| putative ATP-dependent DNA helicase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152927770|gb|ABS33270.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. ATCC
           19397]
 gi|152931079|gb|ABS36578.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. Hall]
          Length = 679

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 225/681 (33%), Positives = 375/681 (55%), Gaps = 24/681 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFI--DRHYRPKISEISEE 67
           ++P++T +GVG K    L K            +DLL Y P  +   D + + K+      
Sbjct: 4   YSPITTLKGVGPKTKEQLEK------CMIFNIMDLLLYFPRDYEFIDNYSKDKLLS---- 53

Query: 68  RIVTITGYISQH-SSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           + V I   +       + +  +    I+ NDG   I   +F +    +KN F  G +  +
Sbjct: 54  KKVIIKVQVENIKRDIRTRTGKILTTIIFNDGEKAIVGSWFNQ--PYIKNYFKIGEEYVL 111

Query: 126 TGKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
            G +K+ +  + + +   + +   ++V    I   Y L   L  +L  K++   L+ +  
Sbjct: 112 QGSLKEYRGNLTINNAQILKNKCGEEVEERKIIPKYPLKGDLKNNLLIKLVDSVLTNID- 170

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E +   L++K  F S+ ++   IH P   K+ E +     RL + ELLA  + +  ++
Sbjct: 171 IGENLPIWLIEKYKFLSLDKSIRTIHKPENQKELEESI---RRLKFQELLAYCLKIAFLK 227

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +  +        +  +    ++  +PF  T +Q   +++I +D  ++  M R+LQGDVGS
Sbjct: 228 EYLETATEGISFIVSEEINNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMNRLLQGDVGS 287

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++ALI++   ++ G Q V++AP  ILA QHYE   K  ++  + +E++ G++  + +
Sbjct: 288 GKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELLIGSIKVSSK 347

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           ++  E++  G+  +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+  K  +   L
Sbjct: 348 KEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKMLNKGKSVDTL 407

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPR+L L+  GD+D+S I E P GR+ I T  +  +    V       ++ G++
Sbjct: 408 VMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFALKEINNGRQ 467

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP +EEK+E N  SV + ++ L   +   +  AI+HG+M   +K+++M  FK+G  
Sbjct: 468 VYIVCPLVEEKEELNLNSVEKLYDDLKGEYFKEVEIAILHGKMKGKEKDTIMKDFKDGKI 527

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CIL+       
Sbjct: 528 KALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCILIARVKNDI 587

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++K++ DGFL+AEEDLK R  GEI G KQ G    L+A       LL IA  +
Sbjct: 588 I-RKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIEDIHLLRIANME 646

Query: 663 AKHILTQDPDLTSVRGQSIRI 683
           +K I+  + +  +   + ++I
Sbjct: 647 SKKIIDSNNEEDNKIKEEVKI 667


>gi|168180622|ref|ZP_02615286.1| ATP-dependent DNA helicase RecG [Clostridium botulinum NCTC 2916]
 gi|182668552|gb|EDT80531.1| ATP-dependent DNA helicase RecG [Clostridium botulinum NCTC 2916]
          Length = 679

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 225/681 (33%), Positives = 375/681 (55%), Gaps = 24/681 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFI--DRHYRPKISEISEE 67
           ++P++T +GVG K    L K            +DLL Y P  +   D + + K+      
Sbjct: 4   YSPITTLKGVGPKTKEQLEK------CMIFNIMDLLLYFPRDYEFIDNYSKDKLLS---- 53

Query: 68  RIVTITGYISQH-SSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           + V I   +       + +  +    I+ NDG   I   +F +    +KN F  G +  +
Sbjct: 54  KKVIIKVQVENIKRDIRTRTGKILTTIIFNDGEKAIVGSWFNQ--PYIKNYFKIGEEYVL 111

Query: 126 TGKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
            G +K+ +  + + +   + +  +++V    I   Y L   L  +L  K++   L+ +  
Sbjct: 112 QGSLKEYRGNLTINNAQILKNKCAEEVEERKIIPKYPLKGDLKNNLLIKLVDSVLTNID- 170

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E +   L++K  F S+ ++   IH P   K+ E +     RL + ELLA  + +  ++
Sbjct: 171 IGENLPIWLIEKYKFLSLDKSIRTIHKPENQKELEESI---RRLKFQELLAYCLKIAFLK 227

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +  +        +  +    ++  +PF  T +Q   +++I +D  ++  M R+LQGDVGS
Sbjct: 228 EYLETATEGISFIVSEEINNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMNRLLQGDVGS 287

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++ALI++   ++ G Q V++AP  ILA QHYE   K  ++  + +E++ G++  + +
Sbjct: 288 GKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELLIGSIKVSSK 347

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           ++  E++  G+  +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+  K  +   L
Sbjct: 348 KEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKMLNKGKSVDTL 407

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPR+L L+  GD+D+S I E P GR+ I T  +  +    V       ++ G++
Sbjct: 408 VMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFALKEINNGRQ 467

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP +EEK+E N  SV + ++ L   +   +  AI+HG+M   +K+++M  FK G  
Sbjct: 468 VYIVCPLVEEKEELNLNSVEKLYDDLKGEYFKEVEIAILHGKMKGKEKDTIMKDFKEGKI 527

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CIL+       
Sbjct: 528 KALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCILIARVKNDI 587

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++K++ DGFL+AEEDLK R  GEI G KQ G    L+A       LL IA  +
Sbjct: 588 I-RKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIEDIHLLRIANME 646

Query: 663 AKHILTQDPDLTSVRGQSIRI 683
           +K I+  + +  +   + ++I
Sbjct: 647 SKKIIDSNNEEDNKIKEEVKI 667


>gi|282861348|ref|ZP_06270413.1| ATP-dependent DNA helicase RecG [Streptomyces sp. ACTE]
 gi|282564006|gb|EFB69543.1| ATP-dependent DNA helicase RecG [Streptomyces sp. ACTE]
          Length = 754

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 224/761 (29%), Positives = 368/761 (48%), Gaps = 80/761 (10%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
               PL    G G   +  +++ ++          DLL ++P  + +R     ++++  +
Sbjct: 6   AFDEPLKKLLG-GP-TAKVMAEHLDL-----HTVGDLLHHYPRRYEERGRLTALTDLPLD 58

Query: 68  RIVTITGYIS--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
             VT+   ++  +  +F   + +  ++ L DG+G + L+FF             GR+   
Sbjct: 59  EHVTVVAQVADARVMTFNGGRGKRLEVTLTDGSGRLQLVFFGHGVHKPHKELLPGRRAMF 118

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNF---------PLIEAVYSLPTGLSVDLFKKIIV 176
            GK+     ++ + HP Y   ++Q  +            +  +Y     L      K + 
Sbjct: 119 AGKVSVFNRKLQLAHPTYQLLDAQAEDEATEAVDAFAGQLLPIYPACKQLDSWRIAKAVD 178

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
             L       + +   L + + F  + EA   IH P    D    + ARERL +DE    
Sbjct: 179 TVLPSAQEAVDPLPASLREGRGFLPLPEALLRIHRPHTKADI---AAARERLRWDEAFVL 235

Query: 237 QIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL   R    +        V   +       +PF+ T+ Q+    +I  D++ ++ M 
Sbjct: 236 QVALARRRFADTQLPAVARRPVPDGLLDAFDAVLPFTLTEGQQKVTGEIFGDLATEHPMH 295

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT------- 348
           R+LQG+VGSGKTLVAL AM   V+AGGQA ++AP  +LAQQH+  I +            
Sbjct: 296 RLLQGEVGSGKTLVALRAMLRVVDAGGQAAMLAPTEVLAQQHHRSITEMMGELAENWGLW 355

Query: 349 ----------------------QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
                                    V ++TG+M  A RR+AL  +  G+A I+IGTHAL 
Sbjct: 356 REAPLDEGRRPGDGRALGGSDRGTKVVLLTGSMGTAARRRALLDLVTGEAGIVIGTHALI 415

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +D ++++ L LV+VDEQHRFGV+QR  L  +    PH+L+MTATPIPRT+ +T  GD++ 
Sbjct: 416 EDKVKFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLET 475

Query: 446 SKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           S + + PAGR PI + ++P       +D   ER++  +  G +AY +CP+I +  +   +
Sbjct: 476 SVLDQLPAGRSPIASHVVPAKDKPHFLDRAWERVREEVEGGHQAYVVCPRIGDDADEAEK 535

Query: 502 SVV-------------------ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNG 540
                                 +    L +   +   I ++HGRM   DK+ VM  F  G
Sbjct: 536 KKGRKQSAPADDAEKRPPLAVLDIAAQLAKGPLAGLRIEVLHGRMPPDDKDDVMRRFAAG 595

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG     C+L+     
Sbjct: 596 EADVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEAHE 655

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIA 659
           +  +  RLS +  T DGF ++  DL+QR+EG++LG  QSG+     +      + ++  A
Sbjct: 656 ASPARARLSAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRVLSVIDDEEVIAAA 715

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           R++A  ++  DPDL   R   +R  L      +  +++  G
Sbjct: 716 REEAVRVVAADPDLE--RLPELRTALDALLDKDREEYLDKG 754


>gi|170758229|ref|YP_001787810.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405218|gb|ACA53629.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 679

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/681 (33%), Positives = 376/681 (55%), Gaps = 24/681 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFI--DRHYRPKISEISEE 67
           ++P++T +GVG K    L K            +DLL Y P  +   D + + K+      
Sbjct: 4   YSPITTLKGVGPKTKEQLEK------CMIFNIMDLLLYFPRDYEFIDNYSKDKLLS---- 53

Query: 68  RIVTITGYISQH-SSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           + V I   +       + +  +    I+ NDG   I   +F +    +KN F  G +  +
Sbjct: 54  KKVIIKVQVENIKRDLRTRTGKILTTIIFNDGEKAIVGSWFNQ--PYIKNYFKIGEEYVL 111

Query: 126 TGKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
            G +K+ +  + + +   + +  +++V    I   Y L   L+ +L  K++   L+ +  
Sbjct: 112 QGSLKEYRGNLTINNAQILKNKYTEEVGERNIIPKYPLKGDLNNNLLIKLVDSVLTNID- 170

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E + + L++K  F S+ ++   IH P   K+ E +     RL + ELLA  + +  ++
Sbjct: 171 IGENLPRWLIEKYKFLSLDKSIRTIHKPENQKELEESI---RRLKFQELLAYCLKIAFLK 227

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +  +        +  +    ++  +PF  T +Q   +++I +D  ++  M R+LQGDVGS
Sbjct: 228 EYLETATKGISFIVSEEINNLIEALPFKLTNAQNKVLQEIFKDQKREKPMNRLLQGDVGS 287

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++ALI++   +  G Q V++AP  ILA QHYE   K  ++  + +E++ G++  + +
Sbjct: 288 GKTIIALISLFNVIRNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELLVGSIKVSSK 347

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           ++  E++  G+  +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+  K  +   L
Sbjct: 348 KEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKMLNKGKSVDTL 407

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPR+L L+  GD+D+S I E P GR+ I T  +  +    V       ++ G++
Sbjct: 408 VMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFALKEINNGRQ 467

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP +EEK+E N  SV + ++ L   +   +  AI+HG+M   +K+++M  FK G  
Sbjct: 468 VYIVCPLVEEKEELNLNSVEKLYDDLKGEYFKEVEIAILHGKMKGKEKDNIMKDFKEGKI 527

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K LI+TTVIEVG++V +A+++IIENAE FGLAQLHQLRGRVGRG+  S CIL+       
Sbjct: 528 KALISTTVIEVGVNVPNATLMIIENAERFGLAQLHQLRGRVGRGKHKSYCILIARVKNDI 587

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++K++ DGFL+AEEDLK R  GEI G KQ G    L+A       LL IA  +
Sbjct: 588 I-RKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIEDIHLLRIANTE 646

Query: 663 AKHILTQDPDLTSVRGQSIRI 683
           +K I+  + +  +   + ++I
Sbjct: 647 SKKIIDSNNEEDNKIKEEVKI 667


>gi|257467948|ref|ZP_05632044.1| ATP-dependent DNA helicase recG [Fusobacterium ulcerans ATCC 49185]
 gi|317062234|ref|ZP_07926719.1| ATP-dependent DNA helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313687910|gb|EFS24745.1| ATP-dependent DNA helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 686

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/699 (33%), Positives = 375/699 (53%), Gaps = 22/699 (3%)

Query: 1   MRPSFLNPLFAPLS--TFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR 58
           MR      ++ P+     +   +K +  L ++            DL +Y P ++ DR   
Sbjct: 1   MRKEEYRDMYQPIEDAEIKYFDEKNTNKLKRL------GIKSLYDLFYYFPRAYDDRTNI 54

Query: 59  PKISEISEERIVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVF 117
            KI ++  +  V +   +   S+   +   +  K    D TG + L++F  +   L+   
Sbjct: 55  MKIGDLRGDEYVVLKATLLTVSAPPTRSGLKMVKATATDNTGILELVWF--QMPYLRKTL 112

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFH-NSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
             G +    G+IK+      +V+P +    N Q +    I  +YS    +  +  +K++ 
Sbjct: 113 KIGEEYIFIGQIKRG-YVYQLVNPEFKLSSNQQKLEAGEILPIYSTSKEIPQNTLRKLMK 171

Query: 177 EAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           EA+ S+L +  E I +++L+K        A   IH P  +K+ E     + R A +ELL 
Sbjct: 172 EAMKSKLYIFQENIPEEILKKYKVMDRERAMKEIHFPSNSKNLEEA---KRRFAIEELLV 228

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            ++ +L  R +   +      +E K    ++ L N+ FS TK+Q+  I +I +D+S    
Sbjct: 229 LEMGILQKRFEMDSQNTSKYELEDKKTLVKQYLENLTFSLTKAQKKVITEIYRDLSNGRI 288

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + R++QGDVGSGKT+V+++ +   VE   Q V+MAP  ILA QHY  +K   +   + VE
Sbjct: 289 INRLIQGDVGSGKTIVSMVLLLYMVENSYQGVLMAPTEILAVQHYLSVKDKFEKLGVRVE 348

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+     ++K L+ I  G+  I+IGTHAL ++++++ +L L+I+DEQHRFGV QR  
Sbjct: 349 LLTGSFKGKAKQKLLDSIKEGEVDIVIGTHALIEENVEFERLGLIIIDEQHRFGVVQRKL 408

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEVI 472
           L  K    ++++M+ATPIPR+L L+  GD+D+S I E P GRKPIKT  I  I+    + 
Sbjct: 409 LRDKGVLANLVVMSATPIPRSLALSIYGDLDVSVIDELPPGRKPIKTKWIATIDETKTMY 468

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531
           E +   LS+G++AY++ P IEE ++   +S  E    + ++     I ++HGRM + +K+
Sbjct: 469 EFIGKKLSQGRQAYFVAPLIEESEKLAAKSTEELLEEVSKYLPDYRIGVLHGRMKNAEKD 528

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            VM  FKN    ++++TTVIEVG+DV +A++++I NAE FGL+ LHQLRGRVGRGE  S 
Sbjct: 529 EVMSRFKNKELDIMVSTTVIEVGVDVPNATVMVINNAERFGLSALHQLRGRVGRGEYQSY 588

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C L+     +  S +RL V++ T+DGF IAEEDLK RK GEI G KQSG           
Sbjct: 589 CFLVSRTD-NAVSKSRLQVMEETQDGFKIAEEDLKLRKSGEIFGTKQSGFSDLKFTDIVH 647

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
               +++ +      L ++  +   R     I     + 
Sbjct: 648 DVKTIKLVKDICTDYLKENKGIIKNRYLKYDIEEKFKEN 686


>gi|291166899|gb|EFE28945.1| ATP-dependent DNA helicase RecG [Filifactor alocis ATCC 35896]
          Length = 684

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 221/664 (33%), Positives = 349/664 (52%), Gaps = 23/664 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           + + +G+G K +  L ++            D L Y P  + DR     + EI  E  V  
Sbjct: 7   MESIKGIGSKKATLLKQL------GIETIEDFLLYFPFRYEDRATHVPLDEIRTEDKVFS 60

Query: 73  TGYISQHSSFQLQKRR-PYKILLNDG---TGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           +G I    + + + +    KI +       G IT+         L   +  G  I   G 
Sbjct: 61  SGRIVSFQTSRPKPKMTITKITVCSELGKEGVITI----FNNPYLHKQYSVGDCIQFYGM 116

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
            +    +I+   P       ++V    I  +Y L  GLS       +   L  L  L E 
Sbjct: 117 CQIKGRKILFSSPEIE-PFGKNVLMNYIYPIYPLVKGLSNHDMVNAMRTILQSLGELEEV 175

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
             + LLQK+S      A   IH P           AR RL Y E    Q+ LL +R + +
Sbjct: 176 FPESLLQKRSLAPFDFAVRNIHFPHS---VSALKSARYRLIYQEFFMLQMHLLNLRNKDE 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
                 +  E + A+     IPF  T +Q+  ++++ +D+ Q+  M R++QGDVGSGKT+
Sbjct: 233 TARSFVLK-ELEQAKSFFDKIPFELTNAQKRVLQEMTEDLKQEKPMQRLVQGDVGSGKTV 291

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           +A  A       G Q V+MAP  +LA+QHYE  KK  + + + +  ++G++ +  + +  
Sbjct: 292 LAWYATYLTFLNGYQTVLMAPTEVLAKQHYEGAKKLFEGSGVRIAFLSGSISKKKKEEIY 351

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHVLLMT 427
           + I+ G   ++IGTHA+ Q+ + + KL L I DEQHRFGV+QR KL  Q   +PH+L+MT
Sbjct: 352 QGISDGDYDLVIGTHAVIQEGVHFSKLALAITDEQHRFGVKQRGKLSKQYEISPHILVMT 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL L   GD+DIS I E P GRK I+T  I   +   V  +    L +G++ Y 
Sbjct: 412 ATPIPRTLTLVLQGDLDISIIDELPKGRKQIETYAIEQKKAHMVYGQCIGELQKGRQLYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP ++E +  + +S  E + SL     S   + ++HG+M   +K  +M  ++     +L
Sbjct: 472 VCPLVKESEVLDLKSAEELYESLKTGVFSSFRVGLLHGKMKSSEKTEMMRQYQEHEIDVL 531

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVGI+V +A+++IIE+A+ FGL+QLHQLRGRVGRG + S C L+Y     + + 
Sbjct: 532 VSTTVIEVGINVPNATVMIIEDAQRFGLSQLHQLRGRVGRGSDQSYCYLIYR-GYDQVAL 590

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ V+ +T DGF+IAE+DL+ R  GE+LG+KQ G+P+  +A    H  ++  +++D + 
Sbjct: 591 KRMQVMTSTNDGFVIAEKDLEIRGPGEVLGVKQHGIPELKLADFTKHQKVMFASKEDIQE 650

Query: 666 ILTQ 669
           +  +
Sbjct: 651 LTDK 654


>gi|153938732|ref|YP_001391791.1| ATP-dependent DNA helicase RecG [Clostridium botulinum F str.
           Langeland]
 gi|152934628|gb|ABS40126.1| ATP-dependent DNA helicase RecG [Clostridium botulinum F str.
           Langeland]
 gi|295319817|gb|ADG00195.1| ATP-dependent DNA helicase RecG [Clostridium botulinum F str.
           230613]
          Length = 679

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 225/681 (33%), Positives = 375/681 (55%), Gaps = 24/681 (3%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFI--DRHYRPKISEISEE 67
           ++P++T +GVG K    L K            +DLL Y P  +   D + + K+      
Sbjct: 4   YSPITTLKGVGPKTKEQLEK------CMIFNIMDLLLYFPRDYEFIDNYSKDKLLS---- 53

Query: 68  RIVTITGYISQH-SSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           + V I   +       + +  +    I+ NDG   I   +F +    +KN F  G +  +
Sbjct: 54  KKVIIKVQVENIKRDIRTRTGKVLTTIIFNDGEKAIVGSWFNQ--PYIKNYFKIGEEYVL 111

Query: 126 TGKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
            G +K+ +  + + +   + +  +++V    I   Y L   L  +L  K++   L+ +  
Sbjct: 112 QGSLKEYRGNLTINNAQILKNKCTEEVEERKIIPKYPLKGDLKNNLLIKLVDSVLTNID- 170

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + E +   L++K  F S+ ++   IH P   K+ E +     RL + ELLA  + +  ++
Sbjct: 171 IGENLPIWLIEKYKFLSLDKSIRTIHKPENQKELEESI---RRLKFQELLAYCLKIAFLK 227

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +  +        +  +    ++  +PF  T +Q   +++I +D  ++  M R+LQGDVGS
Sbjct: 228 EYLETATEGISFIVSEEINNLIEVLPFKLTNAQNKVLQEIFKDQEKEKPMNRLLQGDVGS 287

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT++ALI++   ++ G Q V++AP  ILA QHYE   K  ++  + +E++ G++  + +
Sbjct: 288 GKTIIALISLFNVIKNGYQGVMLAPTEILAVQHYEEALKLFKDFNLNIELLIGSIKVSSK 347

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           ++  E++  G+  +IIGTHAL +D +++Y L +VI DEQHRFGV QR K+  K  +   L
Sbjct: 348 KEIKEKLKEGKIDLIIGTHALIEDDVEFYNLGMVITDEQHRFGVMQRSKMLNKGKSVDTL 407

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPR+L L+  GD+D+S I E P GR+ I T  +  +    V       ++ G++
Sbjct: 408 VMSATPIPRSLTLSLYGDLDLSIIDELPPGRQKIDTYYVNDSYRKRVYNFALKEINNGRQ 467

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTC 542
            Y +CP +EEK+E N  SV + ++ L   +   +  AI+HG+M   +K+++M  FK G  
Sbjct: 468 VYIVCPLVEEKEELNLNSVEKLYDDLKGEYFKEVEIAILHGKMKGKEKDTIMKDFKEGKI 527

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K LI+TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CIL+       
Sbjct: 528 KALISTTVIEVGVNVPNATLMVIENAERFGLAQLHQLRGRVGRGKHKSYCILIARVKNDI 587

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               R+ ++K++ DGFL+AEEDLK R  GEI G KQ G    L+A       LL IA  +
Sbjct: 588 I-RKRMEIMKSSNDGFLVAEEDLKLRGGGEIFGFKQHGSSNLLLADVIEDIHLLRIANME 646

Query: 663 AKHILTQDPDLTSVRGQSIRI 683
           +K I+  + +  +   + ++I
Sbjct: 647 SKKIIDSNNEEDNKIKEEVKI 667


>gi|253583420|ref|ZP_04860618.1| ATP-dependent DNA helicase [Fusobacterium varium ATCC 27725]
 gi|251833992|gb|EES62555.1| ATP-dependent DNA helicase [Fusobacterium varium ATCC 27725]
          Length = 686

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 233/693 (33%), Positives = 378/693 (54%), Gaps = 22/693 (3%)

Query: 1   MRPSFLNPLFAPLS--TFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR 58
           MR      ++ P+     +   +K +  L ++            DL +Y P ++ DR   
Sbjct: 1   MRKEEYRDIYQPIEDAEIKYFDEKNTNKLKRL------GIKSLYDLFYYFPRAYDDRTNI 54

Query: 59  PKISEISEERIVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVF 117
            KI ++  +  V +   +   S+   +   +  K    D TG I L++F  +   L+   
Sbjct: 55  MKIGDLRGDEYVVLKATLLTVSAPPTRSGLKMVKATATDNTGIIELVWF--QMPYLRKTL 112

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIF-HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
             G +    G+IK+      +V+P +    N Q +    I  +YS    +  +  +K++ 
Sbjct: 113 KIGEEYIFIGQIKRG-YVYQLVNPEFKLGSNQQKLEAGEILPIYSTSKEMPQNTLRKLMK 171

Query: 177 EAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           EA+ S+L +  E I +++L+K    +  +A   IH P  +K+ E     + R A +ELL 
Sbjct: 172 EAVKSKLYIFQENIPEEILKKYKVMNREQAMKEIHFPTNSKNLEEA---KRRFAIEELLV 228

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            ++ +L  R +   +      +E K    ++ L N+ FS TK+Q+  I +I +D+S    
Sbjct: 229 LEMGILQKRFEMDSQNTSKYELEDKKTLVKQYLENLTFSLTKAQKKVITEIYRDLSNGRI 288

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           + R++QGDVGSGKT+V+++ +   VE   Q V+MAP  ILA QHY  +K   +   + VE
Sbjct: 289 INRLIQGDVGSGKTIVSMVLLLYMVENSYQGVLMAPTEILAVQHYLSVKDKFEKLGVRVE 348

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+     ++K L+ I  G+  I+IGTHAL ++++++ +L L+I+DEQHRFGV QR  
Sbjct: 349 LLTGSFKGKAKQKLLDSIKEGEVDIVIGTHALIEENVEFERLGLIIIDEQHRFGVVQRKL 408

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEVI 472
           L  K    ++++M+ATPIPR+L L+  GD+D+S I E P GRKPIKT  I  I+    + 
Sbjct: 409 LRDKGVLANLVVMSATPIPRSLALSIYGDLDVSVIDELPPGRKPIKTKWIATIDETKTMY 468

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKE 531
           E +   LS+G++AY++ P IEE ++   +S  E    + ++     I ++HGRM + DK+
Sbjct: 469 EFIGKKLSQGRQAYFVAPLIEESEKLAAKSTEELLEEVSKYLPEYRIGVLHGRMKNADKD 528

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            +M+SFKN    ++++TTVIEVG+DV +A++++I NAE FGL+ LHQLRGRVGRGE  S 
Sbjct: 529 EIMNSFKNKELDIMVSTTVIEVGVDVPNATVMVINNAERFGLSALHQLRGRVGRGEYQSY 588

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C L+     +  S +RL V++ T+DGF IAEEDLK RK GEI G KQSG           
Sbjct: 589 CFLVSRTE-NAVSKSRLQVMEETQDGFKIAEEDLKLRKSGEIFGTKQSGFSDLKFTDIVH 647

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
               +++ +      L ++  +   R     I 
Sbjct: 648 DVKTIKLVKDICTDYLKENKGIIKNRYLKYDIE 680


>gi|134102556|ref|YP_001108217.1| ATP-dependent DNA helicase RecG [Saccharopolyspora erythraea NRRL
           2338]
 gi|133915179|emb|CAM05292.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 750

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 217/725 (29%), Positives = 356/725 (49%), Gaps = 74/725 (10%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           G K +  L         + +   DLL ++P  + +R     I+ +  +   T+   + + 
Sbjct: 18  GAKTAKALE-----SALDLSTVGDLLRHYPRRYAERGELTAIAGLEIDEHATVLAQVERV 72

Query: 80  SSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
           S   ++ RR   +   + DG   +   FF +     +     GR+    GK+   +N++ 
Sbjct: 73  SKRSMKSRRGTIVEARITDGHRSLICTFFNQ--AWRERELLPGRRGMFAGKVTAYRNQLQ 130

Query: 138 MVHPHYIFHNSQDVNF--------PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
           + HP Y     +D +           +  VY    GL      + + + L       + +
Sbjct: 131 LAHPEYQLFTGEDEDVSEAAEEFAGALIPVYPSAQGLPSWSIARCVRQVLDTWDGEDDPL 190

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             +L  +     +  A   IH PR   DF   + A+ERL +DE LA Q+AL  +R +   
Sbjct: 191 PGELRTRLGLTGLEAALRKIHRPR---DFGEVTAAQERLKWDEALAVQLALARLRGEAHA 247

Query: 250 EIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
                    +  I     + +PF  T  Q    +DI  D++ ++ M R++QG+VGSGKT+
Sbjct: 248 HPAPACPRRDDGILAAFDKRLPFELTGGQREIGEDIAADLAVEHPMNRLVQGEVGSGKTV 307

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-----------IVEIITG 357
           VAL AM   V++G QA ++AP  +LA QH   + +      +            V ++TG
Sbjct: 308 VALRAMLQVVDSGRQAAMLAPTEVLAAQHARSLAELLGELGMAGELGGAEQATRVTLLTG 367

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            MP A RRKAL   A G+A I++GTHA+ QD + +  L LV+VDEQHRFGV+QR  L  +
Sbjct: 368 TMPAAQRRKALLEAASGEAGIVVGTHAIIQDRVSFADLGLVVVDEQHRFGVEQRDALRAR 427

Query: 418 ATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDE 470
                 PHVL+MTATPIPRT+ +T  GD++ S + E P GR PI T ++P+    + +D 
Sbjct: 428 GGDEVSPHVLVMTATPIPRTVAMTVYGDLETSALRELPIGRSPISTNVVPVAEKPSWLDR 487

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-------------------------- 504
           V +R+   ++ G + Y +CP+I + +E+  +                             
Sbjct: 488 VWQRIHEEVAAGHQVYVVCPRIGDDEETEGKKRKSSRSSAVDDSDGADEPPPEDSGGQRR 547

Query: 505 ------ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                 +    L     +   + ++HGR+   DK++VM  F  G   +L+ATTV+EVG++
Sbjct: 548 PPVAVLDVAEQLAAGPLASLRLGVLHGRLPADDKDAVMRGFAAGDIDVLVATTVVEVGVN 607

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +A++++I +A+ FG++QLHQLRGRVGRG     C+L+        +  RL  + +T D
Sbjct: 608 VPNATVMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEAMGGTTTRERLEAVASTTD 667

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           GF +A  DL+ R+EG+ILG  QSG      +      + ++  AR++A+  + +DP+L +
Sbjct: 668 GFELARLDLELRREGDILGAAQSGRKSGLKMLSLLRDEDVIAQARQEAESFVAEDPELRA 727

Query: 676 VRGQS 680
             G +
Sbjct: 728 HPGLA 732


>gi|150016042|ref|YP_001308296.1| ATP-dependent DNA helicase RecG [Clostridium beijerinckii NCIMB
           8052]
 gi|149902507|gb|ABR33340.1| ATP-dependent DNA helicase RecG [Clostridium beijerinckii NCIMB
           8052]
          Length = 677

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/666 (33%), Positives = 360/666 (54%), Gaps = 20/666 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +++ +ST +GVG K +  L++            +D+L Y P  +       +   I+ E 
Sbjct: 3   IYSNISTLKGVGPKATEKLNR------CGIFNILDILLYFPRDYEFVDSNVEFENITGED 56

Query: 69  IVTITGYISQHSS-FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVT 126
              +   + +  S  + +  +    +  D  G +++  +F ++   +KN F  G    + 
Sbjct: 57  KQILKCKVIRFRSDVKTKTGKLLTTVEFDYNGHKVSGKWFNQR--YIKNSFKIGEIYNLM 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK K++ N + +V+P  +    + ++  +I   Y L   +S  LF+K+I E LS++  + 
Sbjct: 115 GKFKRVGNTLEVVNP--MVTCEEAISNEII-PKYPLKGDISNKLFEKLINEILSKM-TVK 170

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + +++L K    S+ EA   +H P   +  E       RL + EL    + LLL++ +
Sbjct: 171 ENLPQNILDKYYLISLNEAIRSVHFPDNKEVLEKAII---RLKFQELFTYSLKLLLLKHK 227

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            KK     +             +PF  T +Q   I++IL+D    + M R++QGDVGSGK
Sbjct: 228 IKKNKNGILFQWVDELSLFKEKLPFPLTNAQTRVIREILRDQKSNSSMNRLIQGDVGSGK 287

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T++ALIA+   ++   Q   MAP  ILA QH+E  +K      I +E++TG      +++
Sbjct: 288 TIIALIAIFNVIKNDYQCAFMAPTEILANQHFEEARKVYDEFNIEIELLTGTTSVKEKQR 347

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             ERI   +  ++IGTHALFQD +++ KL L++ DEQHRFGV+QR KL  K      L+M
Sbjct: 348 IKERIRTKEPILVIGTHALFQDDVEFGKLGLIVTDEQHRFGVEQRSKLINKGKRADCLVM 407

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L    D+D+S I E P GRK I T     N+ D   +     + +G++ Y
Sbjct: 408 TATPIPRTLALYLYSDLDVSIIDELPPGRKKIDTRFYADNQRDIAYDLAYDEIKKGRQVY 467

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP IEE ++    SV   +N L         + I+HG+M   +K+ ++  FKN    +
Sbjct: 468 IVCPLIEEDEKEELNSVETLYNKLTSGIFKELKVEILHGKMKGSEKDEIIKRFKNNEVNV 527

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LI+TTVIEVG++V +AS++I+ENAE FGL+QLHQLRGRVGRG+  S CIL+     S  +
Sbjct: 528 LISTTVIEVGVNVPNASVMIVENAERFGLSQLHQLRGRVGRGQYSSYCILIAKAK-SNVT 586

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ ++    DGFLI+E+DL+ R  GE+ G KQSG   F++A       +L  A+ +A 
Sbjct: 587 KKRMQIMTECSDGFLISEKDLELRGAGEMFGKKQSGDEGFVLANLYDDMKILRCAKLEAN 646

Query: 665 HILTQD 670
           ++L  +
Sbjct: 647 NMLQNE 652


>gi|229822821|ref|ZP_04448891.1| hypothetical protein GCWU000282_00110 [Catonella morbi ATCC 51271]
 gi|229787634|gb|EEP23748.1| hypothetical protein GCWU000282_00110 [Catonella morbi ATCC 51271]
          Length = 678

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 212/684 (30%), Positives = 364/684 (53%), Gaps = 27/684 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           LN L + +   +GVG        ++        +   DL+F+ P  F     R  ++ I 
Sbjct: 3   LNWLDS-IDHLKGVGPARVKLFQQV------GVSTVRDLMFHFPFRFESVAVR-PLATIL 54

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLN---DGTGEITLLFFYRKTEMLKNVFFEGRK 122
           ++  VT+ G +           +  ++      +    I + FF +    LK     G++
Sbjct: 55  DQEKVTLKGKVVTPPVVAYFGGKKSRVSFKLAVNDHEIIIVSFFNQ--PYLKQAIQLGQE 112

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             + GK +  +  ++ +    +    QD        VY    GL        I  + ++ 
Sbjct: 113 RAIYGKWQSNRQTLLGMKLIQVAQEGQD-----FAPVYHATKGLKQSAIVTSIAASFNQY 167

Query: 183 -PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
              +PE + + L  +     +  A   +H P    D E    A  ++ Y E    Q  L 
Sbjct: 168 QEAIPEVLPQHLNDQYRLLDLPLALYAMHFP---ADQEQHHQATRKIIYQEFFLYQWRLQ 224

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
              KQ + E GI I+ +    +  +  +P+  T++Q+  + +I +D+  ++ M R++QGD
Sbjct: 225 AALKQHETEPGIQIHYDNDQLKTWIGRLPYELTQAQKQVVNEICRDLMAQHPMRRMVQGD 284

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A+ A++  G Q+ +MAP  ILA+QH +   +   +  I   ++T  M  
Sbjct: 285 VGSGKTLVAFLAILASLSGGFQSALMAPTEILAKQHAQSFNQLFASMGIEAALLTSAMTA 344

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL--TQKAT 419
             ++  L+ +A+GQ  ++IGTHAL Q+++++ +L LVI+DEQHRFGV QR  L       
Sbjct: 345 KAKQAVLDGLANGQIQVVIGTHALIQETVKFKQLGLVIIDEQHRFGVGQRQALVDKNDKI 404

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A ++L MTATPIPR+L +T  G++ +S I + P GR+PI T  +  ++++E+ + +   L
Sbjct: 405 AVNLLQMTATPIPRSLAMTLYGEMHVSTIDQLPKGRQPITTRWLKEDQLEELEDHVAQEL 464

Query: 480 SEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
             G + Y++ P IE  +      +V+E  + L + F S  + ++HG+++  ++E+VMD F
Sbjct: 465 EAGHQVYYVLPLIESSEHLEQIENVLEVADRLADRFPSFKVDVLHGQLNKEEQEAVMDRF 524

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K    ++L+ATT++EVG+DV +A+I++I++AE FGLAQLHQLRGRVGR +  S C L+  
Sbjct: 525 KQNQVQILVATTMVEVGVDVPNATIMVIQSAERFGLAQLHQLRGRVGRSQLASYCYLIGS 584

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           P  ++    RL ++ + +DGFLI+ EDLK R  G+++G  QSG+P+F  A     + +L 
Sbjct: 585 PS-TEQGKERLKIMVDHQDGFLISREDLKIRGMGDLMGRSQSGLPEFHYANLIEDEKILT 643

Query: 658 IARKDAKHILTQDPDLTSVRGQSI 681
           +ARKD + +L     L+    Q++
Sbjct: 644 VARKDVQDLLKHPERLSEAEWQAL 667


>gi|291299625|ref|YP_003510903.1| ATP-dependent DNA helicase RecG [Stackebrandtia nassauensis DSM
           44728]
 gi|290568845|gb|ADD41810.1| ATP-dependent DNA helicase RecG [Stackebrandtia nassauensis DSM
           44728]
          Length = 718

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 219/730 (30%), Positives = 359/730 (49%), Gaps = 51/730 (6%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   LS    VG K +  L+  ++          DL+ ++P  +  R  R  +  + 
Sbjct: 1   MATLDTKLSAV--VGAKTATALANHLDMAVVG-----DLIHHYPFRYAQRGERTDLDSLE 53

Query: 66  EERIVTITGYISQHSSFQLQKRR--PYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRK 122
                T+   +   ++  ++ RR    +++++D  G  +TL FF +           GR 
Sbjct: 54  IGEQATVLAQVRAVTNKPMRSRRGSMLEVVVSDDDGRTLTLTFFNQ--PWQTRYLKAGRW 111

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF---------PLIEAVYSLPTGLSVDLFKK 173
              +GK+ + + R  +  P +      D +            +  VY     +      +
Sbjct: 112 GLFSGKVTEFRGRRQLNGPDFRMLADPDDDEAGEMIEEFAGALIPVYRAAGKVPTWTIAR 171

Query: 174 IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            +  AL  L    + + +DL  K S     +A + IH P      E    A++RL + E 
Sbjct: 172 CVRVALDVLEPPADPLPEDLRHKHSLIGFNDALHAIHRPEST---EQLYAAKKRLKWQEA 228

Query: 234 LAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
            + Q+ L+  + +      +P    +  +       +PF  T  Q     ++   +S  +
Sbjct: 229 FSLQLTLVQRKARAATTPAVPRPGRDDGLLAAFDAKLPFELTDGQREVGDELAAALSTPH 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-- 350
            M R+LQGDVG+GKTLV++ AM   V++G QAV++AP  +LA QHY  I K   +     
Sbjct: 289 PMHRLLQGDVGAGKTLVSVRAMLQVVDSGAQAVLLAPTEVLAAQHYRTILKQLGDLGRGG 348

Query: 351 ---------IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
                     V ++TG++    +R+AL  +A G A I++GTHAL  + + +  L LV+VD
Sbjct: 349 ELGAPTEATRVTLVTGSLGAKAKREALASLADGSAGIVVGTHALLYEGVDFADLGLVVVD 408

Query: 402 EQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           EQHRFGV+QR  L  KA+  PHVL+MTATPIPRT+ +T  GD++ SK+ + P GR PIKT
Sbjct: 409 EQHRFGVEQRDALRAKASDPPHVLVMTATPIPRTVAMTVYGDLETSKLGQLPQGRSPIKT 468

Query: 461 VIIPINRIDEV---IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
            ++P      V    +RL+  + +G +AY +CP++ +  + +          L       
Sbjct: 469 HVVPGTDERWVARSWQRLREEVGKGHQAYVVCPRVGDDDKVDDSERRAPLAVLDVGPRLA 528

Query: 517 -------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                   + I+HGRM   +K++VM  F  G   +L+ATTVIEVG+DV +A++++I +AE
Sbjct: 529 DGPLSGLKLGILHGRMPPDEKDAVMGRFSAGELDVLVATTVIEVGVDVPNATMMVIMDAE 588

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            FG++QLHQLRGRVGRG     C+L+     +  S  RL  + +T DGF +AE DL+QR+
Sbjct: 589 RFGVSQLHQLRGRVGRGSAPGLCLLVTEANAASPSGERLEAVASTTDGFRLAELDLEQRR 648

Query: 630 EGEILGIKQSGMPKF-LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLY 688
           EG++LG  QSG      +        L+  AR +A  ++  DP+L   R   +   +   
Sbjct: 649 EGDVLGDAQSGAKSHVRLLSLLRDAELIGEARAEAVEVIAADPELE--RHPRLAAAIAAL 706

Query: 689 QYNEAFQFIR 698
             ++  +++ 
Sbjct: 707 VDDDRAEYLE 716


>gi|291007073|ref|ZP_06565046.1| ATP-dependent DNA helicase RecG [Saccharopolyspora erythraea NRRL
           2338]
          Length = 740

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 217/725 (29%), Positives = 356/725 (49%), Gaps = 74/725 (10%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           G K +  L         + +   DLL ++P  + +R     I+ +  +   T+   + + 
Sbjct: 8   GAKTAKALE-----SALDLSTVGDLLRHYPRRYAERGELTAIAGLEIDEHATVLAQVERV 62

Query: 80  SSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
           S   ++ RR   +   + DG   +   FF +     +     GR+    GK+   +N++ 
Sbjct: 63  SKRSMKSRRGTIVEARITDGHRSLICTFFNQ--AWRERELLPGRRGMFAGKVTAYRNQLQ 120

Query: 138 MVHPHYIFHNSQDVNF--------PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
           + HP Y     +D +           +  VY    GL      + + + L       + +
Sbjct: 121 LAHPEYQLFTGEDEDVSEAAEEFAGALIPVYPSAQGLPSWSIARCVRQVLDTWDGEDDPL 180

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
             +L  +     +  A   IH PR   DF   + A+ERL +DE LA Q+AL  +R +   
Sbjct: 181 PGELRTRLGLTGLEAALRKIHRPR---DFGEVTAAQERLKWDEALAVQLALARLRGEAHA 237

Query: 250 EIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
                    +  I     + +PF  T  Q    +DI  D++ ++ M R++QG+VGSGKT+
Sbjct: 238 HPAPACPRRDDGILAAFDKRLPFELTGGQREIGEDIAADLAVEHPMNRLVQGEVGSGKTV 297

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-----------IVEIITG 357
           VAL AM   V++G QA ++AP  +LA QH   + +      +            V ++TG
Sbjct: 298 VALRAMLQVVDSGRQAAMLAPTEVLAAQHARSLAELLGELGMAGELGGAEQATRVTLLTG 357

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            MP A RRKAL   A G+A I++GTHA+ QD + +  L LV+VDEQHRFGV+QR  L  +
Sbjct: 358 TMPAAQRRKALLEAASGEAGIVVGTHAIIQDRVSFADLGLVVVDEQHRFGVEQRDALRAR 417

Query: 418 ATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDE 470
                 PHVL+MTATPIPRT+ +T  GD++ S + E P GR PI T ++P+    + +D 
Sbjct: 418 GGDEVSPHVLVMTATPIPRTVAMTVYGDLETSALRELPIGRSPISTNVVPVAEKPSWLDR 477

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-------------------------- 504
           V +R+   ++ G + Y +CP+I + +E+  +                             
Sbjct: 478 VWQRIHEEVAAGHQVYVVCPRIGDDEETEGKKRKSSRSSAVDDSDGADEPPPEDSGGQRR 537

Query: 505 ------ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                 +    L     +   + ++HGR+   DK++VM  F  G   +L+ATTV+EVG++
Sbjct: 538 PPVAVLDVAEQLAAGPLASLRLGVLHGRLPADDKDAVMRGFAAGDIDVLVATTVVEVGVN 597

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +A++++I +A+ FG++QLHQLRGRVGRG     C+L+        +  RL  + +T D
Sbjct: 598 VPNATVMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEAMGGTTTRERLEAVASTTD 657

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           GF +A  DL+ R+EG+ILG  QSG      +      + ++  AR++A+  + +DP+L +
Sbjct: 658 GFELARLDLELRREGDILGAAQSGRKSGLKMLSLLRDEDVIAQARQEAESFVAEDPELRA 717

Query: 676 VRGQS 680
             G +
Sbjct: 718 HPGLA 722


>gi|254383283|ref|ZP_04998636.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
 gi|194342181|gb|EDX23147.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
          Length = 738

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 221/726 (30%), Positives = 370/726 (50%), Gaps = 55/726 (7%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYIS 77
           G   +  L++            +DLL ++P  + +R     ++E+++  +  VT+   ++
Sbjct: 23  GPATAKVLAE-----QLGLHTALDLLHHYPRKYAERGELTALTELADQLDEHVTVVAQVA 77

Query: 78  QHS--SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
                +F   + +  ++ + DG G + L+FF             G +    GK+     +
Sbjct: 78  DARILTFNGGRGKRLEVTITDGNGRLQLVFFGAGVHKPHKELLPGTRAMFAGKVGMFNRK 137

Query: 136 IIMVHPHYIFHNSQDVN-------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           + + HP Y    +   +          +  +Y     L      K +   L       + 
Sbjct: 138 LQLSHPAYEPLGADASDQDAATAFAGRLIPIYPACAKLESWKIAKCVDAVLPSARETVDP 197

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   L + +    + EA   IH P    D E    AR+RL +DE    Q+AL   R+   
Sbjct: 198 LPPALREGRGLVPLTEALLKIHRPATKADVE---DARQRLKWDEAFVLQVALARRRRADS 254

Query: 249 KEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +   +P     G +       +PF+ T+ Q++  K+I  D++ ++ M R+LQG+VGSGKT
Sbjct: 255 QLPAVPRRPVPGGLLDAFDAKLPFTLTEGQQTVSKEIFDDLATEHPMHRLLQGEVGSGKT 314

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-----------QIIVEIIT 356
           +VAL AM A V+ GGQA ++AP  +LAQQH+  I +                   V ++T
Sbjct: 315 MVALRAMLAVVDCGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDQGTKVVLLT 374

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT- 415
           G+M    RRKAL  +  G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+QR  L  
Sbjct: 375 GSMGMPARRKALLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRS 434

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEV 471
           +    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI T ++P       +   
Sbjct: 435 KGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAKDKPHFLARA 494

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVV--------------ERFNSLHEHFTS- 516
            ER++  + +G +AY +CP+I +++ ++ +                 E  + L     + 
Sbjct: 495 WERVREEVGKGHQAYVVCPRIGDEETADPKKKSAEADGDKRPPLAVLEIADELRGGALAG 554

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            S+ ++HGRM   DK+ VM  F  G  K+L+ATTVIEVG++V ++++++I +A+ FG++Q
Sbjct: 555 LSVEVLHGRMDPADKDDVMRRFAAGEVKVLVATTVIEVGVNVPNSTVMVIMDADRFGVSQ 614

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGRVGRG     C+L+     +  +  RL+ +  T DGF ++  DL+QR+EG++LG
Sbjct: 615 LHQLRGRVGRGSAPGLCLLVSEMHEASPARARLAAVAATLDGFELSRIDLEQRREGDVLG 674

Query: 636 IKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
             QSG+     +      + ++  AR++A  ++  DP+L  + G    + L      E  
Sbjct: 675 QAQSGVRSSLRMLAVIDDEEVIAQAREEATRVVADDPELERLPGLK--LALDALLDTERE 732

Query: 695 QFIRAG 700
           Q++  G
Sbjct: 733 QYLEKG 738


>gi|302542239|ref|ZP_07294581.1| ATP-dependent DNA helicase RecG [Streptomyces hygroscopicus ATCC
           53653]
 gi|302459857|gb|EFL22950.1| ATP-dependent DNA helicase RecG [Streptomyces himastatinicus ATCC
           53653]
          Length = 737

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 374/743 (50%), Gaps = 63/743 (8%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL     +G   +  +++ +           DLL ++P  + +R    +++++  + 
Sbjct: 7   LDEPLKKV--LGGNTAKVMAEHL-----GLHTVGDLLHHYPRRYAERGELTRLADLPLDE 59

Query: 69  IVTITGYIS--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            VT+   ++  +   F   + +  ++ + DG+G + L+FF +     +     G +    
Sbjct: 60  HVTVVAQVADARVHKFNSGRGQRLEVTITDGSGRLQLVFFGKGVHKPRAELLPGSRAMFA 119

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPL------IEAVYSLPTGLSVDLFKKIIVEAL- 179
           GK+    ++  + HP +    +   +  +      +  +Y     +     ++ +   L 
Sbjct: 120 GKVSVFNHKRQLAHPEFKLLRADSGSDAVEAFANQLLPLYPACKQMESWQIQQAVDTVLG 179

Query: 180 ------SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
                 + L  L + + + L + +   ++  A   IH PR   D    + AR+RL +DE 
Sbjct: 180 PAGQEDTVLAGLIDPLPESLREGRGLATLPGALRRIHRPRTKADI---ADARDRLKWDEA 236

Query: 234 LAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
              Q+AL   R+        P    +G +       +PF+ T  Q+    +I  D++  +
Sbjct: 237 FVLQVALARRRQADATAPAAPRRPVDGGLLDAFDARLPFTLTDGQKRVSAEIFADLATDH 296

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-------- 344
            M R+LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LAQQH+  I +         
Sbjct: 297 PMHRLLQGEVGSGKTMVALRAMLGVVDAGGQAAMLAPTEVLAQQHHRSITEMMGELAEGG 356

Query: 345 ---TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
                     V ++TG+M  A RR+AL  +  G+A I+IGTHAL +D +Q++ L LV+VD
Sbjct: 357 MLGGAEQGTKVVLLTGSMGAAARRQALLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVD 416

Query: 402 EQHRFGVQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           EQHRFGV+QR  L  +    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI +
Sbjct: 417 EQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIAS 476

Query: 461 VIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            ++P       +    ER++  ++ G +AY +CP+I + ++    +  +      E    
Sbjct: 477 HVVPAKDKPHFLARTWERVREEVAGGHQAYVVCPRIGDDEDEAKAAKEKSAEDEAEKRPP 536

Query: 517 ------------------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                              + ++HGRM+   K+ VM  F  G   +L+ATTVIEVG++V 
Sbjct: 537 LAVLDVADKLAAGPLRDLRVEVLHGRMAPEAKDEVMRRFAAGGVDVLVATTVIEVGVNVP 596

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A+ ++I +A+ FG++QLHQLRGRVGRG     C+L+   P +  +  RL  +  T DGF
Sbjct: 597 NATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEASPARGRLGAVAATLDGF 656

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVR 677
            ++  DL+QR+EG++LG  QSG+   L     + D  ++  AR++A  I+T DP+LT   
Sbjct: 657 ELSRIDLEQRREGDVLGQAQSGVRSSLRVLAVIDDEEVIAAAREEATAIVTADPELTGYP 716

Query: 678 GQSIRILLYLYQYNEAFQFIRAG 700
              +R  L      E  +F+  G
Sbjct: 717 --ELRTALDALLDKEREEFLDKG 737


>gi|225389053|ref|ZP_03758777.1| hypothetical protein CLOSTASPAR_02798 [Clostridium asparagiforme
           DSM 15981]
 gi|225044875|gb|EEG55121.1| hypothetical protein CLOSTASPAR_02798 [Clostridium asparagiforme
           DSM 15981]
          Length = 685

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 214/692 (30%), Positives = 358/692 (51%), Gaps = 19/692 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+S+ +G+G K +    K+            DLL Y+P ++        I ++ E  ++ 
Sbjct: 6   PISSLKGIGDKTAALFEKL------GVYTVADLLAYYPRAYDAFEEPVAIGQLKENSVMA 59

Query: 72  IT-GYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           +    +      +    +   + + D TG + + ++      ++     G      G++ 
Sbjct: 60  VQSALVKHADLLRFNHMQVVSLQIKDLTGSLQVSWYN--MPYMRANLKPGEMYVFRGRVV 117

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           + + R+IM  P      +       ++ +Y    GL      K   +AL    +  E++ 
Sbjct: 118 RKRGRLIMEQPEVFTPQAYGELVHSMQPIYGQTRGLGNKAIVKAQTQALQLRQMEREYMP 177

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             L ++     I  A   IH P    +  +    R+RL +DE     + +  ++++   +
Sbjct: 178 ATLRKRYELAEINYAVEHIHFPADQSELLYA---RKRLVFDEFFLFLVGVRKLKEKRADK 234

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
               +    +   +    +P+  T +QE  ++++  D+S    M R++QGDVGSGKT++A
Sbjct: 235 RSPYVMEFREEVARFQEALPYRLTGAQERTLREVFDDLSGGLVMNRLIQGDVGSGKTIIA 294

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRKAL 368
           ++A+  A   G Q  +MAP  +LA+QH+E I +  +  +I     ++TG+M    +R A 
Sbjct: 295 VLALLMAACNGYQGALMAPTEVLAKQHFESITQLFETYKIEKKPVLVTGSMTAKEKRLAY 354

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E+I   +A I+IGTHAL Q+ + Y  L LVI DEQHRFGV QR  L+ K   PHVL+M+A
Sbjct: 355 EQIERHEADIVIGTHALIQEKVHYDNLALVITDEQHRFGVGQRELLSSKGGDPHVLVMSA 414

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +   GD+DIS I E P GR+PIK  ++      +    +   + EG++AY I
Sbjct: 415 TPIPRTLAIILYGDLDISVIDELPQGRQPIKNCVVNTGYRPKAYSFIARQVEEGRQAYVI 474

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP +EE +     +V++    L +   +S+ +  +HG+M   +K  +M+ F  G  ++L+
Sbjct: 475 CPMVEESEMIEAENVLDYAKKLRKELPASVTVEYLHGKMKGREKNRIMERFAAGEIQVLV 534

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG   S CI + +    + +  
Sbjct: 535 STTVIEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGSSQSYCI-MVNCSDEEGTLE 593

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL +L  + DGF IA EDLK R  G+I G++QSG  +F +A      ++L+   ++   +
Sbjct: 594 RLDILNRSNDGFYIASEDLKLRGPGDIFGMRQSGDMEFKLADIFTDANILKSVSEEVNRL 653

Query: 667 LTQDPDLTSVRGQSIRILL--YLYQYNEAFQF 696
           L  DP+L       ++  L  YL +  E    
Sbjct: 654 LDGDPELEEEEHSQLKRKLDEYLGRNYERLNL 685


>gi|300172900|ref|YP_003772065.1| ATP-dependent DNA helicase RecG [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887278|emb|CBL91246.1| ATP-dependent DNA helicase RecG [Leuconostoc gasicomitatum LMG
           18811]
          Length = 676

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 222/662 (33%), Positives = 350/662 (52%), Gaps = 25/662 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +    GVG K    L ++            DL+ Y P  + D   R   SE  +   VT 
Sbjct: 8   VDVLAGVGPKRLDALHEL------GIFTIEDLIGYFPFRYEDLGERLP-SETLDGDKVTF 60

Query: 73  TGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +S      +  K+   +  L      I + FF +    +      G+++ V G    
Sbjct: 61  KGIVSTPPVITRFGKKNQTRFGLLIEHENIRVTFFNQ--PWIAQNIDVGQEVAVYGTYNA 118

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIE 190
            K  +  +    I + S D     ++ +Y     ++    + +I  A + +   L   + 
Sbjct: 119 AKAALTGMK---IINASVDA----LDPIYPSSKKITAKTIRHLIELAWADVRGTLGSLVP 171

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           +++  K            +H P    D      AR   A++E    Q+ L L++   +  
Sbjct: 172 ENMRTKYRLLDRNMMIESMHFPS---DMAAAKAARRSAAFEEFFVFQMRLQLLKLADQNF 228

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            G  IN + +  +    ++PF  T +Q   I +ILQD  +   M R+LQGDVGSGKT+VA
Sbjct: 229 AGEGINYDERAIRNFETSLPFKLTAAQTKVISEILQDQKRPRHMNRLLQGDVGSGKTVVA 288

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRKAL 368
            +AM A V AG QA IMAP  ILAQQH   + +   N  +   VE++T  +  A RR  L
Sbjct: 289 AMAMYAVVTAGMQAAIMAPTEILAQQHALSLTQLFDNAGLSLRVELLTSGLKVAARRHLL 348

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E + +G   I++GTHAL Q  + ++ L L ++DEQHRFGV QR  L +    P +L MTA
Sbjct: 349 EDLENGDIDILVGTHALLQPDVAFHHLGLAVIDEQHRFGVNQRAALRENGVNPDILAMTA 408

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T+ G++D+S I + P GRK IKT  +  N++D  I  +K  +  G +AY +
Sbjct: 409 TPIPRTLSITAYGEMDVSIIDQLPNGRKVIKTTRMGHNQLDNAIAFVKKQIDVGAQAYIV 468

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            P IEE +  + ++    + ++   F    + ++HGR+S+ +K+++M  FK    ++L+A
Sbjct: 469 TPLIEESESLDVQNATAMYEAMQLEFPQYQVGLLHGRLSNDEKKTLMADFKANRIQILVA 528

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG+DV +A++++I +A+ FGLAQLHQLRGRVGRG   S  IL+  P  +     R
Sbjct: 529 TTVIEVGVDVPNATVMLILDADRFGLAQLHQLRGRVGRGSRQSYTILVADPK-TDYGTAR 587

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L  +  T DGF++A+ DL+ R  G+ILG KQSG+P+F++  P    +++EIA+++A  ++
Sbjct: 588 LDAMVETTDGFILAQRDLELRGSGDILGTKQSGVPEFVVGDPIKDLTMMEIAQQEAITLV 647

Query: 668 TQ 669
           +Q
Sbjct: 648 SQ 649


>gi|182417252|ref|ZP_02948605.1| ATP-dependent DNA helicase RecG [Clostridium butyricum 5521]
 gi|237667623|ref|ZP_04527607.1| ATP-dependent DNA helicase RecG [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182378898|gb|EDT76411.1| ATP-dependent DNA helicase RecG [Clostridium butyricum 5521]
 gi|237655971|gb|EEP53527.1| ATP-dependent DNA helicase RecG [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 677

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 228/666 (34%), Positives = 353/666 (53%), Gaps = 20/666 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +++ +ST +GVG K +  L++            +D+L Y P  +       +   I  E 
Sbjct: 3   IYSSISTLKGVGPKATEKLNR------CGIFNILDILLYFPRDYDFIEGNVEFETIDGEE 56

Query: 69  IVTI--TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            + +       +        +    I    G  ++T  +F +    +KN F +G +  + 
Sbjct: 57  KLILLCEAKAFKRDVRTKNGKLLTTIDFQYGEHKVTAKWFNQ--PYVKNNFQKGSQYNLM 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK K++ N + +V P        +     I   Y L   +S  LF+K+I   L+++  + 
Sbjct: 115 GKFKRVGNMLEIVGP---VIACGEAISNEIVPKYPLKGDISNKLFEKLINTILAQMN-IK 170

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + +D+L K    S+  A   IH P      E       RL + EL    + LLL++ Q
Sbjct: 171 ENLPQDILDKYKLVSLDSAIRSIHFPENKDMLEKAKT---RLKFQELFTYSLKLLLLKYQ 227

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            KK             +    ++PF  T +Q   ++DIL+D   +  M R++QGDVGSGK
Sbjct: 228 LKKNSNGIKFEWVDELKVFKESLPFPLTNAQTKVVRDILRDQKSQCPMNRLIQGDVGSGK 287

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VALIA+   ++   Q+V+MAP  ILA QHYE  KK      I +E++TG      +++
Sbjct: 288 TIVALIAIFNVIKNNYQSVLMAPTEILATQHYEEAKKVYSQFNIEIELLTGGTSIKEKKR 347

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             ERI   +  ++IGTHALFQ+ +++ +L L+I DEQHRFGV+QR +L  K      ++M
Sbjct: 348 IKERIRGNEPILVIGTHALFQEDVEFGRLGLIITDEQHRFGVEQRSRLMNKGNKADCIVM 407

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L    D+D+S I E P GRK I T     ++ D   E     + +G++ Y
Sbjct: 408 TATPIPRTLALYLYSDLDVSVIDELPPGRKKIDTRYYEDSKRDIAYELAYDEIKKGRQVY 467

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP IEE ++    SV   +  L         + I+HG+M   +K+ ++  FKN    +
Sbjct: 468 IVCPLIEEDEKEQLNSVETLYEKLTSTIFKNLRVEILHGKMKGNEKDDIIKRFKNHESDV 527

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LI+TTVIEVG++V +AS++I+ENAE FGLAQLHQLRGRVGRG+  S C+L+     S  +
Sbjct: 528 LISTTVIEVGVNVPNASVMIVENAERFGLAQLHQLRGRVGRGQYESYCVLIAKAK-SNIT 586

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ ++  + DGFLI+E+DLK R  GE+ G KQSG   F +A      ++L  A+++A 
Sbjct: 587 KKRMMIMTESSDGFLISEQDLKLRGAGEMFGRKQSGDAGFALANLYEDINILRCAKQEAV 646

Query: 665 HILTQD 670
           +I+  D
Sbjct: 647 NIIKDD 652


>gi|160947391|ref|ZP_02094558.1| hypothetical protein PEPMIC_01325 [Parvimonas micra ATCC 33270]
 gi|158446525|gb|EDP23520.1| hypothetical protein PEPMIC_01325 [Parvimonas micra ATCC 33270]
          Length = 675

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 235/686 (34%), Positives = 374/686 (54%), Gaps = 26/686 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            L   +G+G+K    L+K+            +LL Y P S+ID     KISEI++E   +
Sbjct: 2   ELKDIKGIGEKKIALLNKL------GIFTVNNLLEYFPYSYIDTTKFKKISEITKEGSYS 55

Query: 72  ITGYISQHSSFQLQKRRPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
               I      + +K+R  ++     +++     T+++F   +  +           + G
Sbjct: 56  YRLKIISL--MENRKKRNIRVTKFLAMDEEMNYCTIVYFN--SIFISKNLKINNVYEMYG 111

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           + K L   + +  P      ++      I   Y L  G+S     KII   L +     E
Sbjct: 112 RAKLLGKNVEIQSPTM---QNKANIIGSIIPQYHLCKGISNLDIVKIIQNLLKKNSYFEE 168

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            I  ++L + +  S   A   IH P   KD E    A+ RLA+DE+   Q+++  +++  
Sbjct: 169 KIPSNILNELNLESYDNAIRNIHFP---KDNESFIRAKRRLAFDEIFYFQLSMKKLKRNN 225

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +  I   I  E       ++++ F  T SQ   + DI +DM+   +M R++QGDVG GKT
Sbjct: 226 EDAIKFEIKDETFD---FIKSLSFKLTNSQNKVLDDIFKDMTSDKQMNRLVQGDVGCGKT 282

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +++ +AM   ++ G Q+V+MAP  ILA+QHYE  KK      I VE++ G++ ++ ++  
Sbjct: 283 IISFVAMFNVIKNGFQSVLMAPTEILARQHYESAKKLFFKYNIKVELLVGSLKESEKKVI 342

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            E+I +G+  IIIGTHA+FQ+ + Y  L  VI DEQHRFGV+QRL L++K+  P +L+M+
Sbjct: 343 REKIENGEVDIIIGTHAVFQEKVVYKNLGFVITDEQHRFGVKQRLLLSKKSKNPDILVMS 402

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRT+ L    D+DIS I E P+GR  +KT  +  N  +  +  +K  +SEG++AY 
Sbjct: 403 ATPIPRTVGLVMFCDLDISTIDELPSGRGKVKTYFVDENYEERYMNFIKKHISEGRQAYI 462

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP ++E      +SV+  +  L E +   + I  IHG++  +DK+ +M  F+NG  K+L
Sbjct: 463 VCPLVDESDTLELQSVINLYERLKERYFQDVEIEFIHGKLKPVDKDRIMKDFENGKIKVL 522

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVGI+V +++I++I NAE FGL+QLHQLRGR+GRG   S CIL+ +   S N  
Sbjct: 523 VATTVIEVGINVPNSNIMVIYNAERFGLSQLHQLRGRIGRGNYESFCILVSNNK-STNVK 581

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R+ ++ ++ DGF I+E+D   R  G+ILG +QSG  +F I   +    LL+ A K    
Sbjct: 582 KRMDIMCSSNDGFYISEQDFLLRGYGDILGYRQSGEARFKILNIQKDYELLKSAIKYVDE 641

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYN 691
           IL  D +      Q ++  +  +  N
Sbjct: 642 ILKHDFNFDKEENQVVKRNVDEFIQN 667


>gi|303234025|ref|ZP_07320674.1| ATP-dependent DNA helicase RecG [Finegoldia magna BVS033A4]
 gi|302494950|gb|EFL54707.1| ATP-dependent DNA helicase RecG [Finegoldia magna BVS033A4]
          Length = 678

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 219/663 (33%), Positives = 349/663 (52%), Gaps = 20/663 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           LS  +G+GKK    L+ +            DLL Y P  + +R     I +  +E    I
Sbjct: 3   LSEIKGIGKKKLEVLNSM------GIININDLLNYFPYRYENRSIIQNIIDTRDEENCVI 56

Query: 73  TGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
                     +  +R       +  D T +I++ +F +    ++N         + GKI+
Sbjct: 57  KVKFISKPITKYLRRNLNLTTAIAFDDTSKISVSWFNQ--PFIRNQILPNTTYYLYGKIQ 114

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189
           +++N+  +  P  I   +      +I  +Y +  G++ +   K +  A+      +   I
Sbjct: 115 RVQNQFKISSP--ILSKTFGGKLGIIYPIYKVKKGITNNDMIKFVDFAIKHCIDEIKNVI 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              +++     +   A   IH P    D+     AR  L  +E++  Q+A+  M+    +
Sbjct: 173 PYSMIKNYDIENKRNAIKNIHKP---VDYAQFKRARTALVLEEVIIMQLAMKSMKTSLNQ 229

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
              I    + +     + ++ F  TK Q  AIKDI  DM+ + RM R++QGDVGSGKT+V
Sbjct: 230 TNYIKFQSD-ESINIFINSLKFELTKGQLEAIKDIEMDMTSEKRMNRLVQGDVGSGKTIV 288

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A  A+  +  +G Q+  MAP  ILA QHYE + +      I V ++  ++ ++ +   L+
Sbjct: 289 AEAAIFKSHSSGYQSAFMAPTDILATQHYESLSEDFSKFGIKVCLLKSDLTKSEKDLVLK 348

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            I  G   +I+GTHA+ QD +++ +L LVI DEQHRFGV QR K++ K   P VL+MTAT
Sbjct: 349 GIKSGYFDVIVGTHAIIQDFVEFKRLGLVITDEQHRFGVGQRKKISDKGQNPDVLVMTAT 408

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L+  GD+DIS I E P GRK I+T  +  +    + + ++  +  G +AY +C
Sbjct: 409 PIPRTLALSYYGDLDISTINEMPKGRKIIETYSVGFSYEKRIADFIRKQVDNGFQAYIVC 468

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           P IEE +     +V E +N L   + S  ++ ++HG+M   +KE  M  F +G  K+L++
Sbjct: 469 PLIEESESLELENVTELYNRLTGEYFSDINVGMLHGKMKSSEKEETMKDFVDGKTKILVS 528

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG++V  A++I+I NAE FGL+QLHQLRGRVGR  + S CIL+ +   S     R
Sbjct: 529 TTVIEVGVNVRKANVIVIYNAERFGLSQLHQLRGRVGRSSDQSYCILINNAH-SDEQMER 587

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           ++++  T  GF ++++DL  R  G++LG +QSG+P   IA  E    L+E A     +I 
Sbjct: 588 MNIMVKTNSGFELSQKDLMMRGSGDLLGTRQSGIPLLNIADLEKDYDLIEKAAVITDYIY 647

Query: 668 TQD 670
           T D
Sbjct: 648 TND 650


>gi|306820931|ref|ZP_07454551.1| DNA helicase RecG [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551045|gb|EFM39016.1| DNA helicase RecG [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 671

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 233/684 (34%), Positives = 361/684 (52%), Gaps = 25/684 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            LF  +     +G+K    L+ +            DLL Y P  + DR    KISEI   
Sbjct: 2   ELFDNVIDLPKIGEKKQKLLNNL------GVYNIYDLLNYFPRKYEDRRIFKKISEIKVR 55

Query: 68  RIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             V +   I ++     + K+    I + D TG   +  F      +     +GR+I   
Sbjct: 56  DKVCVHAKIIRYEKVMYKFKKSIINIYVQDDTGTACIKLFNNN--FILPDLEKGREIFFY 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           G  ++  + +    P   F +S+     LI  +Y L  GL       I+  A+    +  
Sbjct: 114 GLSEENIDILQFNSPEIEF-DSKGKKTGLIYPLYPLTKGLRNSEIINIVKYAIENTNLSD 172

Query: 187 -EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E +++D+ ++    S  EA   IH P   KD E    +R R  ++E     I L   +K
Sbjct: 173 LEILDEDIRKRYRLLSSDEAIKNIHFP---KDIEILKQSRYRCIFNEFFDLNIFLGNYKK 229

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
              ++ GI           I+  +PF+ T SQ   + DI+ DMS++  M R++QGDVGSG
Sbjct: 230 NVVEKKGITFK--RIDLSSIINKLPFTLTSSQNKVLDDIMSDMSRQTPMRRLIQGDVGSG 287

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT++A ++M    + G Q+ +M P  +LA QHYE    +     I VE++T ++      
Sbjct: 288 KTVLAFLSMYNCAKNGYQSALMVPTEVLAIQHYESALNFFDGEDIRVELLTKSVKSKE-- 345

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP-HVL 424
           K  ++I + +  ++IGT AL Q+ +Q+  L L+I DEQHRFGV QR +L QK+  P  V+
Sbjct: 346 KIYQKIKNREVDVVIGTQALIQEKVQFSNLGLIITDEQHRFGVNQRKELEQKSEEPADVI 405

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +M+ATPIPRTL L    D+DIS I E P  R  IKT+       ++V + ++  +  G++
Sbjct: 406 VMSATPIPRTLSLVIHKDLDISVIDELPKNRVSIKTIAENKRNENKVFDFIQKQIRLGRQ 465

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTC 542
           AY +CP +EE ++ +  SV E    +   F     IA +HG+M   +KE ++  F     
Sbjct: 466 AYIVCPLVEENEDMDLISVDELHKKIQTIFDDDLKIAKLHGKMKSSEKEELLKEFMENRI 525

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LLI+TTVIEVGI+V +ASI++I +A+ FGL+QLHQLRGRVGRG++ S C+LLY    S 
Sbjct: 526 NLLISTTVIEVGINVPNASIMVIYDAQRFGLSQLHQLRGRVGRGDKQSYCVLLY-ENASA 584

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  R+  + ++ DGF IA +DL+ R  GEI GIKQ G+P+F +A    +  +LE+++K 
Sbjct: 585 ITMERIKTIVSSNDGFEIARKDLELRGAGEIFGIKQHGLPEFHLADIIKNADILELSQKC 644

Query: 663 AKHILTQDPDLTSVRGQSIRILLY 686
           A+ +L     L   + ++IR+ LY
Sbjct: 645 AQEVLNT---LDDEKIKTIRLRLY 665


>gi|91205818|ref|YP_538173.1| ATP-dependent DNA helicase RecG [Rickettsia bellii RML369-C]
 gi|91069362|gb|ABE05084.1| ATP-dependent DNA helicase RecG [Rickettsia bellii RML369-C]
          Length = 740

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 258/716 (36%), Positives = 379/716 (52%), Gaps = 70/716 (9%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+P+  F  + +     L ++        +   DLLFY P S+  +   P ++E+ E  
Sbjct: 9   LFSPIKAFINIREDTIAALKRL------GISNIRDLLFYSPVSYQTKTLSPNLTEVREGD 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           ++ +   I    +   +  +P +I  ++ TG + L+FF++    + N    G K T++GK
Sbjct: 63  LIQVEVIIESV-NLPNKSHQPLRITASNDTGSLLLVFFHKPPPFIFNKLKVGSKHTISGK 121

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV---- 184
           ++   + + + HP +I +         +E +YSL   +S       I++A+         
Sbjct: 122 VQFFDHHLQISHPEFIVNPK---LTKELEPIYSLTYLISNKQLYSYIIKAIDMFEEKCKN 178

Query: 185 -----LPEWIEK---DLLQKKSFPSIAEAFNIIHN-----------PRKAKDFEWTSPAR 225
                + E++++    L    +     EAF  +             P+  K        +
Sbjct: 179 VQDKEVKEYLDEVLESLKGVHALRHCEEAFMPMRQSSDVKSLISGLPQPLKGLRNDDVHK 238

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           + LA  EL+A QI+L   R Q   + G       ++   IL ++ F  T  Q+  I++I 
Sbjct: 239 KSLATKELIANQISLFKARTQIVGKHGNIYPKAKQVQTNILNSLGFELTSYQQQVIEEIE 298

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
           +D +    M+R+LQGDVGSGKTLVAL+ M      G QA +MAP  +LA QHYEF  +  
Sbjct: 299 KDQASGIEMMRLLQGDVGSGKTLVALLTMTNVAAVGFQATLMAPTDLLANQHYEFFVRAL 358

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           +NT I + ++TG +  + R+  + ++ +G+  I+IGTHALFQ+ + + KL  +++DEQHR
Sbjct: 359 KNTDIKIGLLTGKILGSARKNIMMQLENGEIDILIGTHALFQEKVNFKKLGYIVIDEQHR 418

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGVQQRL L  K   P VL+MTATPIPR+L LT  GD+ ISK+  KP  R PI T  + I
Sbjct: 419 FGVQQRLDLINKGINPDVLVMTATPIPRSLALTMFGDMTISKLQGKPKNRLPIATNTMSI 478

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------------------------- 500
           N+I+ ++E +   L  G++ YWICP IE+ K S+                          
Sbjct: 479 NKIEHILEAINKKLVAGERIYWICPLIEQAKISDVILRLDCGIQKTANNANNFDWIPWRG 538

Query: 501 -----------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                        V+ RFNS+   +     IIHG+M +  K++VM  FK+G  K+L+ATT
Sbjct: 539 HGMTIEADSLLMDVMNRFNSVENIYKGCTGIIHGKMKNEQKDAVMKQFKDGEIKILVATT 598

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTRL 608
           VIEVGIDV +A++IIIENAE FGLAQLHQLRGRVGRG   S CILLY+P  L K    R 
Sbjct: 599 VIEVGIDVPEATLIIIENAERFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLGKVGRGRF 658

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ++K T DGF IAE+DLK R  GEILG+KQSG   F  A       LL  A K A+
Sbjct: 659 EIMKQTNDGFYIAEQDLKLRGSGEILGVKQSGEMDFFFADLARDYDLLLKANKFAE 714


>gi|302554401|ref|ZP_07306743.1| ATP-dependent DNA helicase RecG [Streptomyces viridochromogenes DSM
           40736]
 gi|302472019|gb|EFL35112.1| ATP-dependent DNA helicase RecG [Streptomyces viridochromogenes DSM
           40736]
          Length = 742

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 224/750 (29%), Positives = 370/750 (49%), Gaps = 64/750 (8%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P+   PL  PL +   +G   +  +++ +           DLL ++P  + +R     ++
Sbjct: 5   PALEEPLQQPLKSV--LGPATAKVMAEHL-----GLLTVGDLLHHYPRRYEERGQLTHLA 57

Query: 63  EISEERIVTITGYISQHS-------SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKN 115
           ++  +  VT+   ++               K +  ++ + DG+G + L+FF         
Sbjct: 58  DLPMDEHVTVVAQVADARLHTFASAKAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHK 117

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIF--------HNSQDVNFPLIEAVYSLPTGLS 167
               G +    GK+     R+ + HP Y            + +     +  +Y     L 
Sbjct: 118 ELLPGTRAMFAGKVSVFNRRLQLAHPAYELLRGNPDEPDEAVEAWAGTLIPIYPATAKLE 177

Query: 168 VDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER 227
                K +   L       + +   L Q +    + EA   IH P    D E    AR R
Sbjct: 178 SWKIGKALQTVLPTAQEAVDPLPDSLRQGRGLVPLPEALLKIHRPHTKADIE---DARAR 234

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQ 286
           L +DE    Q+AL   R    +   +P               +PF+ T  Q+   ++I  
Sbjct: 235 LKWDEAFVLQVALARRRHAETQLPAVPRRPTPDGLLSAFDARLPFTLTDGQQRVSREIFD 294

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-- 344
           D++  + M R+LQG+VGSGKT+VAL AM A V+AGGQA ++AP  +LAQQH+  I +   
Sbjct: 295 DLATDHPMHRLLQGEVGSGKTMVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSIVEMMG 354

Query: 345 ---------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
                           V ++TG+M  A RR AL  +  G+A I+IGTHAL +D +Q++ L
Sbjct: 355 ELAEGGMLGGAEQATKVVLLTGSMGAAARRHALLDLTTGEAGIVIGTHALIEDKVQFHDL 414

Query: 396 ILVIVDEQHRFGVQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            LV+VDEQHRFGV+QR  L  +    PH+L+MTATPIPRT+ +T  GD++ S + + PAG
Sbjct: 415 GLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAG 474

Query: 455 RKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV------ 504
           R PI + ++P       +    ER++  +  G +AY +CP+I ++++   ++        
Sbjct: 475 RSPIASHVVPAADKPHFLARAWERVREEVGNGHQAYVVCPRIGDEEDDPKKAGKKKSPED 534

Query: 505 -----------ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                      +  + L +   S  ++ ++HGRM   DK++VM  F  G   +L+ATTVI
Sbjct: 535 EAEKRPPLAVLDVADQLSKGPLSGLTVEVLHGRMHPDDKDAVMRRFAAGETGVLVATTVI 594

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           EVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG     C+L+     +  +  RL  +
Sbjct: 595 EVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMAEASAARQRLGAV 654

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQD 670
            +T DGF ++  DL+QR+EG++LG  QSG      +      + ++  AR++A  ++  D
Sbjct: 655 ASTLDGFELSRIDLEQRREGDVLGQAQSGARTSLRMLAVIEDEEIIAEAREEAAAVVAAD 714

Query: 671 PDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           P+LT++   ++R  L      E  Q++  G
Sbjct: 715 PELTNLP--ALRTALEALLDEEREQYLDKG 742


>gi|218290485|ref|ZP_03494605.1| ATP-dependent DNA helicase RecG [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239506|gb|EED06701.1| ATP-dependent DNA helicase RecG [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 678

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 223/679 (32%), Positives = 355/679 (52%), Gaps = 23/679 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            +    GVG +    L  +            DLL  +P  + D        E      VT
Sbjct: 7   SVRALPGVGPQKERALEAL------GIRTVDDLLHTYPFRY-DERAEKPFPEWRNGDRVT 59

Query: 72  ITGYISQHSSFQLQKRRPY---KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
               +      + +  +     ++ + DG   +  L+F      L++   +GR + VTGK
Sbjct: 60  ARAVVEGPVQVRWRGSKSIMTARVRV-DGQHPVVCLWF--SQHYLRSKLSDGRFVVVTGK 116

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPE 187
             +   R+++               P +  VY     +S     ++I++AL +    + E
Sbjct: 117 WNETLRRLVVS----ETSFDAVAQAPSLVPVYRASKDISTKAIHQLILKALEQYADQIAE 172

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +   L++K    +  +A   +H P+  +D      AR RL ++E L  QI L  +R + 
Sbjct: 173 SLPYALVRKYRLWTHRDALFGMHRPKSLEDV---RQARRRLVFEEFLLFQIQLQWLRAKR 229

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++ +G    V        +  +P   T +Q  A +DIL+D+ +   M R++QGDVGSGKT
Sbjct: 230 EEPVGRAQPVPDDALTAFVALLPGPMTDAQRRACEDILRDLQRPVPMTRLIQGDVGSGKT 289

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VAL A  A   A GQ+ +MAP  ILA+QH    ++      + VE++TG++    R + 
Sbjct: 290 WVALFACFAVHLARGQSALMAPTEILAEQHARLAQQLLGPAGVRVELLTGSVTGRERERV 349

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  +A G   + +GTHAL  + +++  L L++ DEQHRFGV QR +L +K  AP VL+++
Sbjct: 350 LAGLASGDVSLAVGTHALLSEGVEFRDLALLVTDEQHRFGVAQRARLREKGRAPDVLMLS 409

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL L   GD+D+S + E P GR+P++T+ +     + V+  ++  L+ G +AY 
Sbjct: 410 ATPIPRTLALAIYGDMDVSILNELPKGRRPVQTIAVSSRDDETVLRLIRRELARGHQAYI 469

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P IE  ++ +  SV E +  + EH     + ++HGRM   DKE +M +F++G    L+
Sbjct: 470 VAPAIEASEQDDVASVTELYERVREHLAGFRVELLHGRMPSADKERMMRAFRDGEIHALV 529

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVGIDV +A+++ I  AE FGLAQLHQLRGRVGRG   S C LL H   S+ +  
Sbjct: 530 ATTVIEVGIDVPNATVMAIYGAERFGLAQLHQLRGRVGRGPHRSYC-LLIHDASSEAARA 588

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R+  +  T DGF IAE DL+ R  GE+ G++QSG+P+F +        ++E+AR++A  +
Sbjct: 589 RIETMLQTNDGFEIAERDLELRGPGELFGLRQSGLPEFALGDLARDYRIMEVAREEALAL 648

Query: 667 LTQDPDLTSVRGQSIRILL 685
           L +D    +   + +R  L
Sbjct: 649 LRRDDFWYAPWAEGLRDAL 667


>gi|51473772|ref|YP_067529.1| ATP-dependent DNA helicase RecG [Rickettsia typhi str. Wilmington]
 gi|51460084|gb|AAU04047.1| ATP-dependent DNA helicase RecG [Rickettsia typhi str. Wilmington]
          Length = 703

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 264/684 (38%), Positives = 380/684 (55%), Gaps = 40/684 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LFAP+  F  + +       ++            DLLFY P S+ ++   P ++E+    
Sbjct: 10  LFAPVKAFINIREDTVSAFKRL------GINNIRDLLFYLPVSYQNKILSPNLTEVRGGE 63

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+     I    + Q +  +P KI  ++ TG I L+FF++  + + N    G K  ++GK
Sbjct: 64  IIQTE-IIVNSINLQKKGNQPLKITASNNTGSILLVFFHKPPQFILNKLKVGTKHIISGK 122

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++    ++ ++HP +I +         IE +YS+   LS       I++A+       + 
Sbjct: 123 VQFFNYQLQILHPEFITNPK---LSKAIEPLYSITYSLSNKQLYSYIIKAIEIFEEKCKG 179

Query: 189 IEKDLLQKK------------------SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
           IE   + +                   +  S +   +I+ NPR A     T  A+++LA 
Sbjct: 180 IEDKEVHEYLDVILQNLKILHVFFSPHNLISWSSTMDIVVNPRYA-----TVAAKKQLAI 234

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            EL+A QI+LL +R Q  ++ G        I   ILR + F  T  Q+  I++I  + S 
Sbjct: 235 KELIANQISLLNVRMQINRKQGNIYPKATSIQDNILRELGFELTYYQKQVIEEIESEQSD 294

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           K  M+R+LQGDVGSGKTLVAL+ M   V  G QA +MAP  +LA QHY+F  K  +NT I
Sbjct: 295 KVEMMRLLQGDVGSGKTLVALLTMVNVVTTGLQATLMAPTDLLANQHYDFFVKALKNTNI 354

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V ++TG +    R+  + ++ +G+  I+IGTHALFQ+ + + KL  +++DEQHRFGVQQ
Sbjct: 355 KVGLLTGKILGKARKNIIIQLVNGKIDILIGTHALFQEKVSFKKLGYIVIDEQHRFGVQQ 414

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           RL L  K   P VL+MTATPIPR+L LT  GD+ ISK+  KP  R  I T  + IN+I  
Sbjct: 415 RLNLINKGVNPDVLIMTATPIPRSLALTMFGDMTISKLMGKPKDRLSIVTKTMSINKIGY 474

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV------ERFNSLHEHFTSSIAIIHGR 524
           +IE +   L  G++ YWICP I ++++   +          RFNS+   +     IIHG+
Sbjct: 475 IIEAINKRLIAGERVYWICPLITQREKEALQEDHLLMDVINRFNSIENVYQGYTGIIHGK 534

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M++  KE +M  FK G  K+L+AT VIEVGIDV +A++I+IENAE FGLAQLHQLRGRVG
Sbjct: 535 MANDQKERIMKQFKEGKIKILVATNVIEVGIDVSEATLIVIENAEQFGLAQLHQLRGRVG 594

Query: 585 RGEEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           R    S CILLY+P  L K +  R  ++K+T DGF IAE+DLK R  GEILGIKQSG   
Sbjct: 595 RCSLQSYCILLYNPKRLGKVAQNRFKIMKHTNDGFYIAEQDLKLRGSGEILGIKQSGEID 654

Query: 644 FLIAQPELHDSLLEIARKDAKHIL 667
           F  A  +    LL  A K A+  +
Sbjct: 655 FFFADLKDDYELLIKAHKVAERAI 678


>gi|169824372|ref|YP_001691983.1| ATP-dependent helicase [Finegoldia magna ATCC 29328]
 gi|167831177|dbj|BAG08093.1| ATP-dependent helicase [Finegoldia magna ATCC 29328]
          Length = 678

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 219/663 (33%), Positives = 351/663 (52%), Gaps = 20/663 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           LS  +G+GKK    L+ +            DLL Y P  + +R     I +  +E    I
Sbjct: 3   LSEIKGIGKKKLEVLNSM------GIININDLLNYFPYRYENRSIIKNIIDTRDEENCVI 56

Query: 73  TGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
                     +  +R       +  D T +I++ +F +    ++N         + GKI+
Sbjct: 57  KVKFISKPITKYLRRNLNLTTAIAFDDTSKISVSWFNQ--PFIRNQILPNTTYYLYGKIQ 114

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWI 189
           +++N+  +  P  I   +      +I  +Y +  G++ +   K +  A+      +   I
Sbjct: 115 RVQNQFKISSP--ILSKTFGGKLGIIYPIYKVKKGITNNDMIKFVDFAIKHCIDEIKNVI 172

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              +++     +   A   IH P    D+     AR  L  +E++  Q+A+  M+    +
Sbjct: 173 PYSMIKNYDIENKRNAIKNIHKP---VDYMQFKRARTALVLEEVIIMQLAMKSMKTSLNQ 229

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           +  I +  + +     + ++ F  TK Q  AIKDI  DM+ + RM R++QGDVGSGKT+V
Sbjct: 230 QNYIKLQSD-ESINIFINSLKFELTKGQLEAIKDIEMDMTSEKRMNRLVQGDVGSGKTIV 288

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A  A+  +  +G Q+  MAP  ILA QHYE + +      I V ++  ++ ++ +   L+
Sbjct: 289 AEAAIFKSHSSGYQSAFMAPTDILATQHYESLSEDFSKFGIKVCLLKSDLTKSEKDLVLK 348

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            I  G   +I+GTHA+ QD +++ +L LVI DEQHRFGV QR K++ K   P VL+MTAT
Sbjct: 349 GIKSGYFDVIVGTHAIIQDFVEFKRLGLVITDEQHRFGVGQRKKISDKGQNPDVLVMTAT 408

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L+  GD+DIS I E P GRK I+T  +  +    + + ++  +  G +AY +C
Sbjct: 409 PIPRTLALSYYGDLDISTINEMPKGRKIIETYSVGFSYEKRIADFIRKQVDNGFQAYIVC 468

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           P IEE +     +V E +N L   + S  ++ ++HG+M   +KE  M  F +G  K+L++
Sbjct: 469 PLIEESESLELENVTELYNRLTGEYFSDINVGMLHGKMKSSEKEETMKDFVDGKTKILVS 528

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVG++V  A++I+I NAE FGL+QLHQLRGRVGR  + S CIL+ +   S     R
Sbjct: 529 TTVIEVGVNVRKANVIVIYNAERFGLSQLHQLRGRVGRSSDQSYCILI-NKAHSDEQMER 587

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           ++++  T  GF ++++DL  R  G++LG +QSG+P   IA  E    L+E A     +I 
Sbjct: 588 MNIMVKTNSGFELSQKDLMMRGSGDLLGTRQSGIPLLNIADLEKDYDLIEKAAVITDYIY 647

Query: 668 TQD 670
           T D
Sbjct: 648 TND 650


>gi|239623788|ref|ZP_04666819.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521819|gb|EEQ61685.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 685

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 216/683 (31%), Positives = 365/683 (53%), Gaps = 17/683 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            P+ + +G+G+K      K+            DLL Y+P ++        I ++ ++ ++
Sbjct: 5   QPVHSLKGIGEKTGKLFEKL------GVFSIDDLLSYYPRAYDTYEAPVSIGQLKDQTVM 58

Query: 71  TITGYISQHSS-FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            +   + + ++  +L   +   + L D TG + + ++      ++     G      G++
Sbjct: 59  AVESVLLKGANLVRLNHIQIVSVQLKDITGSLQVSWYN--MPYMRANLKSGETYVFRGRV 116

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            + + R++M  P      + +     ++ VY    GLS     K   +AL    +  E++
Sbjct: 117 VRKRGRLVMEQPEVFTPEAYEAVAHSMQPVYGQTRGLSNKTIVKAQQQALEVRRLEREYM 176

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              L +K     I  A   IH P    +  +    R+RL +DE     + +  M++  + 
Sbjct: 177 PAGLRRKYELAEINYAIEHIHFPADRTELLFA---RKRLVFDEFFMFLVGVRRMKEHRED 233

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           +    +    + A+ +  ++P++ T +QE A++++ +DM     M R++QGDVGSGKT++
Sbjct: 234 KHSPYVVKRVQEAKALKSSLPYALTGAQERALEEVYRDMEGGLVMNRLIQGDVGSGKTII 293

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHRRKA 367
           A++A+  A   G Q  +M P  +LA+QHYE +    +   I  +  ++TG+M    +R A
Sbjct: 294 AILALVQAAYNGYQGALMVPTEVLARQHYESMISLFEAHGITKVPVLVTGSMTAKEKRLA 353

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             +IA  +A IIIGTHAL Q+ + Y  L LVI DEQHRFGV QR  L+ K   PHVL+M+
Sbjct: 354 YGKIAGHEADIIIGTHALIQEKVVYDNLALVITDEQHRFGVGQRELLSTKGQEPHVLVMS 413

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +   GD+DIS I E P GR+ I+  ++      +    ++  +  G +AY 
Sbjct: 414 ATPIPRTLAIIIYGDLDISVIDELPQGRQAIRNCVVDPGYRPKAYSFIQKQVEMGHQAYI 473

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP +E  +     +V++   SL     S IA+  +HG+M   +K ++M+ F  G  ++L
Sbjct: 474 ICPMVEASEMIEAENVLDYTKSLRTELPSQIAVEYLHGKMKAKEKNAIMERFAAGGIQVL 533

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CI + +    K++ 
Sbjct: 534 VSTTVIEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGKAQSYCI-MVNCSHDKDTG 592

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL +L  + DGF IA EDLK R  G+I G++QSG  +F +A      ++L+   ++   
Sbjct: 593 ERLDILNRSNDGFYIASEDLKLRGPGDIFGLRQSGDMEFKLADIFTDANILKRVSEEVDL 652

Query: 666 ILTQDPDLTSVRGQSIRILLYLY 688
           +L +DP L     + ++  +  Y
Sbjct: 653 LLDKDPQLELEEHRELKRKIEDY 675


>gi|260771993|ref|ZP_05880910.1| ATP-dependent DNA helicase RecG [Vibrio metschnikovii CIP 69.14]
 gi|260612860|gb|EEX38062.1| ATP-dependent DNA helicase RecG [Vibrio metschnikovii CIP 69.14]
          Length = 615

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 240/598 (40%), Positives = 356/598 (59%), Gaps = 18/598 (3%)

Query: 89  PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS 148
              + ++DG G +TL FF   T  +KN F  G+ I   G+IK   + + ++HP Y  +  
Sbjct: 1   MLTVKISDGNGSLTLRFFNF-TAAMKNSFAIGKVIYAFGEIKPGNHGLEIIHPDYQLYTQ 59

Query: 149 QDVNFP---LIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPEWIEKDLLQKKSFPSIA 203
                P    +  VY    GL     + +  +AL+ L    + E +   L  K+   S+A
Sbjct: 60  PQETQPEEATLTPVYPTTEGLRQSTLRSLTEQALALLDKAAVQELMPDGLYDKQ--ISLA 117

Query: 204 EAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           +A +I+H P    D     E   PA+ RL  +ELLA  +++L +R + +++  +P+  +G
Sbjct: 118 QALHILHRPPTDIDLSQFDEGRHPAQVRLIIEELLAQNLSMLAVRSKGQQDAALPLITQG 177

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           ++ ++ L  +PF PT++Q   +++I  D+SQ + M+R++QGDVGSGKTLVA +A   A+E
Sbjct: 178 QLKKQFLAQLPFQPTQAQTRVVQEIETDLSQAHPMMRLVQGDVGSGKTLVAALAALRAIE 237

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G Q  +MAP  +LA+QH      +     I V  + G +    R+  L +IA G A +I
Sbjct: 238 HGYQVALMAPTELLAEQHAANFANWFAPLGIQVAWLAGKLKGKARQTELTQIASGTAKMI 297

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KATAPHVLLMTATPIPRTL 435
           +GTHALFQ+ +++  L LVI+DEQHRFGV QRL+L +    +   PH L+MTATPIPRTL
Sbjct: 298 VGTHALFQEQVEFDHLALVIIDEQHRFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTL 357

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAYWICPQIEE 494
            +T+  D++ S I E P GR PI+TV IP  +  ++IER++   L E K+AYW+C  I+E
Sbjct: 358 AMTAYADLETSIIDELPPGRTPIQTVAIPDTKRSDIIERVRHACLHEHKQAYWVCTLIDE 417

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++  +    L    T   I ++HGRM   +K+ VM +FK+    LL+ATTVIEV
Sbjct: 418 SEVLEAQAAADTAEELQRQLTELKIGLVHGRMKPAEKQQVMQAFKDNQLHLLVATTVIEV 477

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY  PLSK +  RL+VL+ 
Sbjct: 478 GVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYRSPLSKTAQKRLAVLRE 537

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           + DGF+IA+ DL+ R  GE+LG KQ+G+  F IA       L+   ++ A+HI    P
Sbjct: 538 SNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIADLVRDQRLIPEVQRIARHIHDHYP 595


>gi|294815344|ref|ZP_06773987.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC
           27064]
 gi|326443698|ref|ZP_08218432.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC
           27064]
 gi|294327943|gb|EFG09586.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC
           27064]
          Length = 784

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 229/756 (30%), Positives = 371/756 (49%), Gaps = 75/756 (9%)

Query: 7   NPLFAPLS-TFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +PL  PL+ T    G   +  L               DLL ++P  + +R    +++E+ 
Sbjct: 42  DPLDEPLTRTL---GPASAKVL-----GEQLGLRTVGDLLHHYPRRYEERGRLTRLAELP 93

Query: 66  EERIVTITGYIS--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
            +  VT+   ++  +  +F   + +  ++ + DG+G + L+FF R           G + 
Sbjct: 94  LDEEVTVVAQVADARVHTFNGGRGKRLEVTITDGSGRLQLVFFGRGVHKPHQELLPGTRA 153

Query: 124 TVTGKIKKLKNRIIMVHPHY---------------IFHNSQDVNFPLIEAVYSLPTGLSV 168
              G++     ++ + HP Y                   + D     +  +Y    G+  
Sbjct: 154 MFAGRVSVFNRKLQLAHPSYAKLGTGDGADGGGGHDDGTAVDSWAGALIPIYPACKGMES 213

Query: 169 DLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
               K +   L R     + +   L + + F  + EA   +H PR   D E     R+RL
Sbjct: 214 WKIAKAVDAVLPRRTEATDPLPPALREGRGFVPLPEALLKVHRPRTKADIEAA---RQRL 270

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQD 287
            +DE    Q+AL   R    +   +      G I       +PF+ T+ Q     +I  D
Sbjct: 271 KWDEAFVLQVALARRRFADTQLPAVARRPAPGGILDAFDARLPFTLTEGQRKVTGEIFGD 330

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           ++ ++ M R+LQG+VGSGKTLVAL AM A V+AGGQA ++AP  +LAQQH+  + +   +
Sbjct: 331 LATEHPMHRLLQGEVGSGKTLVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSVVEMMGD 390

Query: 348 TQ-----------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
                          V ++TG+M  A RR AL  +  G+A I+IGTHAL +D +Q++ L 
Sbjct: 391 LADGGTLGAPDGATKVVVLTGSMGAAARRAALLDLVTGEAGIVIGTHALIEDKVQFHDLG 450

Query: 397 LVIVDEQHRFGVQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
           LV+VDEQHRFGV+QR  L  +    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR
Sbjct: 451 LVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGR 510

Query: 456 KPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV------- 504
            PI + ++P       +    ER++  + +G +AY +CP+I +++E    +         
Sbjct: 511 SPIASHVVPARDKPHFLARAWERVREEVGKGHQAYVVCPRIGDEEEGTGAAAKSGRKAAD 570

Query: 505 -----------------ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
                            E    L     +   I ++HGRM   DK++VM  F  G   +L
Sbjct: 571 EEAQAADAEKRPPLAVLEIAEELERGPLAGLRIGVLHGRMPPEDKDAVMRRFTAGEVDVL 630

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVG++V +A+ ++I +A+ FG++QLHQLRGRVGRG     C+L+   P +  + 
Sbjct: 631 VATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPAASPAR 690

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAK 664
            RL  +  T DGF ++  DL+QR+EG++LG  QSG      +      + ++  AR++A 
Sbjct: 691 ARLGAVAATLDGFELSRIDLEQRREGDVLGQAQSGARSSLRMLAVIEDEEVIAAAREEAV 750

Query: 665 HILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             +  DP+L    G  + +   L +  E  Q++  G
Sbjct: 751 RTVRADPELEHTPGLRLALDALLDK--EREQYLDKG 784


>gi|302558168|ref|ZP_07310510.1| ATP-dependent DNA helicase RecG [Streptomyces griseoflavus Tu4000]
 gi|302475786|gb|EFL38879.1| ATP-dependent DNA helicase RecG [Streptomyces griseoflavus Tu4000]
          Length = 740

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 218/735 (29%), Positives = 357/735 (48%), Gaps = 60/735 (8%)

Query: 16  FRGV-GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74
            + V G   +  +++ +           DLL ++P  + +R     ++++  +  VT+  
Sbjct: 16  LKKVLGPATAKVMAEHL-----GLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVA 70

Query: 75  YISQHS-------SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            ++               K +  ++ + DG+G + L+FF             G +    G
Sbjct: 71  QVADARLHTFASAKAPRGKGQRLEVTITDGSGRLQLVFFGAGVHKPHKELLPGTRAMFAG 130

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNF-----PLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           K+     R+ + HP Y                 +  +Y     L      K +   L   
Sbjct: 131 KVSVFNRRVQLAHPAYELLRDDAEETVETWAGALIPIYPATAKLESWKIGKALQTVLPSA 190

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
               + +   L   +    + EA   IH P    D E    AR RL +DE    Q+AL  
Sbjct: 191 QEAVDPLPDSLRAGRGLVGLPEALLKIHRPHTKADVE---DARARLKWDEAFVLQVALAR 247

Query: 243 MRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            R    +   +    +           +PF+ T+ Q     +I  D++ ++ M R+LQG+
Sbjct: 248 RRHADAQLPAVARRPKPDGLLTAFDGRLPFTLTEGQRKVSAEIFTDLATEHPMHRLLQGE 307

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQI 350
           VGSGKT+VAL AM A V+AGGQA ++AP  +LAQQH+  + +               T  
Sbjct: 308 VGSGKTMVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSVTEMMGELAEGGMLGGAETAT 367

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V ++TG+M  A RR AL  +A G+A ++IGTHAL +D ++++ L LV+VDEQHRFGV+Q
Sbjct: 368 KVVLLTGSMGAAARRHALLDLATGEAGLVIGTHALIEDKVKFHDLGLVVVDEQHRFGVEQ 427

Query: 411 RLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467
           R  L  +    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI + ++P     
Sbjct: 428 RDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKP 487

Query: 468 --IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----------------ERFN 508
             +    ER++  +  G +AY +CP+I ++++   ++                   +   
Sbjct: 488 HFLARAWERVREEVEGGHQAYVVCPRIGDEEDDPKKAGRKKSPEDEAERRPPLAVLDIAE 547

Query: 509 SLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            L         + ++HGRM   DK++VM  F  G   +L+ATTVIEVG++V +A+ ++I 
Sbjct: 548 QLAAGPLRGLRVEVLHGRMQPDDKDAVMRRFAAGEADVLVATTVIEVGVNVPNATAMVIM 607

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           +A+ FG++QLHQLRGRVGRG     C+L+   P +  +  RL+ + +T DGF ++  DL+
Sbjct: 608 DADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEASPARQRLTAVASTLDGFELSRIDLE 667

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH-ILTQDPDLTSVRGQSIRILL 685
           QR+EG++LG  QSG    L     + D  +    ++    I+  DP+LT + G  +R  L
Sbjct: 668 QRREGDVLGQAQSGTRSSLRMLAVIDDEEIIAEAREEAAGIVAADPELTGLPG--LRTAL 725

Query: 686 YLYQYNEAFQFIRAG 700
                 E  Q++  G
Sbjct: 726 EALLDEEREQYLEKG 740


>gi|320008320|gb|ADW03170.1| ATP-dependent DNA helicase RecG [Streptomyces flavogriseus ATCC
           33331]
          Length = 753

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 225/765 (29%), Positives = 374/765 (48%), Gaps = 82/765 (10%)

Query: 6   LNPLFA---PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           ++P+ A   PL     +G   +  +++ ++          DLL ++P  + +R     ++
Sbjct: 1   MDPVSAFDEPLKKL--LGGATAKVMAEHLDL-----HTVGDLLHHYPRRYEERGRLTALT 53

Query: 63  EISEERIVTITGYISQHSS--FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           E+  +  VT+   ++      F   + +  ++ L DG+G + L+FF             G
Sbjct: 54  ELPLDEHVTVVAQVADARIMMFNNGRGKRLEVTLTDGSGRLQLVFFGHGVHKPHKELLPG 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-----------LIEAVYSLPTGLSVD 169
           R+    GK+     ++ + HP Y   +++D +              +  +Y     L   
Sbjct: 114 RRAMFAGKVSVFNRKMQLAHPTYQLLDARDDDAGDVTEAVDAFAGQLLPIYPACKQLDSW 173

Query: 170 LFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
              K +   L       + +   L + + F  + EA   IH P+   D    + AR+RL 
Sbjct: 174 RIAKAVDTVLPSAQEAVDPLPPALREGRGFVPLPEALLRIHRPQTKADI---AAARDRLR 230

Query: 230 YDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
           +DE    Q+AL   R    +       +V G +       +PF+ T+ Q+    +I   +
Sbjct: 231 WDEAFVLQVALARRRYADTQLPAKARRSVPGGLLDAFDATLPFTLTEGQQKVTGEIFDAL 290

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY---- 344
           + ++ M R+LQG+VGSGKTLVAL AM   V+AGGQA ++AP  +LAQQH+  + +     
Sbjct: 291 ATEHPMHRLLQGEVGSGKTLVALRAMLRVVDAGGQAAMLAPTEVLAQQHHRSVTEMMGEL 350

Query: 345 -------------------------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
                                           V ++TG+M  A RR+AL  +  G+A I+
Sbjct: 351 AEKWGLWRDAPPQEGGGGRPEGMPGGSGLGTKVVLLTGSMGVAARRRALLDLVTGEAGIV 410

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAPHVLLMTATPIPRTLVLT 438
           IGTHAL +D +Q++ L LV+VDEQHRFGV+QR  L  +    PH+L+MTATPIPRT+ +T
Sbjct: 411 IGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMT 470

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEE 494
             GD++ S + + PAGR PI + ++P       +    ER++  +  G +AY +CP+I +
Sbjct: 471 VFGDLETSVLDQLPAGRSPIASHVVPAKDKPHFLSRAWERVREEVESGHQAYVVCPRIGD 530

Query: 495 KKESNFRSVV----------------ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDS 536
           + E   R                   E    L +   +   + ++HGRM   DK+ VM  
Sbjct: 531 EDEPAGRKTKKAAEEDGDKRPPLAVLEIAEQLAKGPLAGLRVEVLHGRMPADDKDDVMRR 590

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   +L+ATTVIEVG++V +A++++I +A+ FG++QLHQLRGRVGRG     C+L+ 
Sbjct: 591 FAAGQADVLVATTVIEVGVNVPNATVMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVS 650

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSL 655
               +  +  RLS +  T DGF ++  DL+QR+EG++LG  QSG+     +      + +
Sbjct: 651 EAHEASPARARLSAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRVLSVIDDEEV 710

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           +  AR++A  ++  DP L   R   +R  L      +  +++  G
Sbjct: 711 IAAAREEAVRVVADDPGLE--RLPELRTALDALLDKDREEYLDKG 753


>gi|254519230|ref|ZP_05131286.1| ATP-dependent DNA helicase RecG [Clostridium sp. 7_2_43FAA]
 gi|226912979|gb|EEH98180.1| ATP-dependent DNA helicase RecG [Clostridium sp. 7_2_43FAA]
          Length = 676

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 227/666 (34%), Positives = 363/666 (54%), Gaps = 21/666 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +F  +S+ +GVG K +  L+K             DLL Y P  +         +EI  E 
Sbjct: 3   IFMEISSLKGVGPKLTEKLNK------CGIFTIYDLLLYFPRDYEFIKGDVAFNEIDGEE 56

Query: 69  IVTITGYISQH-SSFQLQKRRPYKILLNDGTGEITL-LFFYRKTEMLKNVFFEGRKITVT 126
              +T  +  +    + +  +    +  D  G I +  +F ++   +KN +       + 
Sbjct: 57  KQILTCRVIGYDRDVKTKTGKIISAIKFDYKGHIVIAKWFNQR--YIKNSYRLNEFYDLV 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK K++ N + +++P       +D     I   Y L   LS  +  K+I + L  + ++ 
Sbjct: 115 GKFKRVGNLLEVINP---MVGCRDAKKSEIIPKYPLKGDLSDRIITKLINQILDEV-IIT 170

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + + K++L K     + +A   IH P+   D +       RL + EL    + LLL++ +
Sbjct: 171 DNLPKEILDKYKMIGLDKAIREIHFPKGKGDLDQAII---RLKFQELFTYSMKLLLLKNK 227

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            +   GI      +    +  ++PF+ T +Q   +++IL+D   K  M R++QGDVGSGK
Sbjct: 228 LRSNDGISF-YWHEELTTLKESLPFNLTDAQTKVVREILRDQKSKYSMNRLVQGDVGSGK 286

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA+IAM   ++ G QA +M P  ILA QHYE   K  +N  + VE++TG+     +R+
Sbjct: 287 TIVAIIAMFNVIKNGFQASLMVPTEILANQHYEETLKILKNFNVEVELLTGSTSLKEKRR 346

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             ERI+ G+  I+IGTHAL Q+ + +  L LVI DEQHRFGV+QR KL  K   P VL+M
Sbjct: 347 IKERISTGEPLIVIGTHALIQEDVDFTNLGLVITDEQHRFGVEQRSKLINKGRRPDVLVM 406

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L    D+D+S I + P GRK I T     N      +     + +G++ Y
Sbjct: 407 TATPIPRTLALYMYSDLDVSIIDKLPPGRKKIDTRFYSENDRMLAYDLALDEIRKGRQVY 466

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP IEE ++    SV + +  L +      S+ I+HG+M   +K+ +++ FK+   K+
Sbjct: 467 IVCPLIEENEKMELNSVEKLYEELKDGVFKNISVEILHGKMKPKEKDELINLFKDDKIKV 526

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           +I+TTVIEVG++V +AS++IIEN+E FGLAQLHQLRGRVGRG+  S CIL+     ++ +
Sbjct: 527 IISTTVIEVGVNVPNASMMIIENSERFGLAQLHQLRGRVGRGQYESYCILIGKAK-NEKT 585

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ ++  + DGF I+E+DLK R  GE+ G++QSG    ++A       +L+ AR +A 
Sbjct: 586 RKRMKIMTESTDGFYISEQDLKLRGAGEMFGLRQSGDIGLVLADIYEDIDILKCARYEAN 645

Query: 665 HILTQD 670
           +++  +
Sbjct: 646 NLINSE 651


>gi|330837736|ref|YP_004412377.1| ATP-dependent DNA helicase RecG [Spirochaeta coccoides DSM 17374]
 gi|329749639|gb|AEC02995.1| ATP-dependent DNA helicase RecG [Spirochaeta coccoides DSM 17374]
          Length = 699

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 220/698 (31%), Positives = 349/698 (50%), Gaps = 31/698 (4%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           F+  L  P+++  GVG K +                  D+L   P S+ DR     +  +
Sbjct: 2   FIRQLQEPIASLPGVG-KSARL-----GYDALGIRTQGDVLLLSPRSWEDRSIIVPLGSV 55

Query: 65  S----EERIVTITGYISQHSSF--QLQKRRPYKILLND----GTGEITLLFFYRKTEMLK 114
           +    E  +V     +   S F  + + +R  K+++ D    G G ++LL F R  + L+
Sbjct: 56  ARNTGENTVVNTFVQVLSQSWFGGRTRGKRTLKVIVRDISGNGDGRLSLLCFGR--DFLE 113

Query: 115 NVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP-----LIEAVYSLPTGLSVD 169
            V   GR   V    +   +   +    +     +D   P      +  +Y L   LS  
Sbjct: 114 KVLVTGRTFYVY--AQAAYHMTELQSSQFEVIPMRDDGSPPAEFGAVLPIYPLSGSLSQR 171

Query: 170 LFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
           + ++ +   L+      + +   L+   +      A  + H P   +D      AR+ LA
Sbjct: 172 IIRRDVAAVLAARS-FDDELPPSLMDAYALLPTDRAIRMWHQPSSLEDV---KKARQTLA 227

Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
           + EL   Q+       +                ++ +  +PFS T  QE+ +K+I  D+ 
Sbjct: 228 FTELFYLQLVTRRRAVRTDSSTLKSPGEITGSEKRFISLLPFSLTADQETVLKEIRMDLD 287

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
             + M R+LQGDVGSGKTLVA I+    +  GGQ   MAP  +LA+QH E   +      
Sbjct: 288 SSSPMNRMLQGDVGSGKTLVAWISALHVLSHGGQVAFMAPTELLARQHAENAARLLAPAG 347

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + +  +TG++    R+  L+ +  G   +IIGTHALF   +++ +L  VI+DEQHRFGV 
Sbjct: 348 VRLAFLTGSVKGKERKLILDNLKAGNIDVIIGTHALFSKEVEFRRLRFVIIDEQHRFGVG 407

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           QRL L  KA  P VLLMTATPIPRTL LT  GD+++S I   P GR P+ T ++     +
Sbjct: 408 QRLALMDKAATPDVLLMTATPIPRTLALTVFGDLNVSTIHTMPPGRLPVITHLVSDASRE 467

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSD 527
            + + + +    G + Y++ P+I++   S+ R V   F  L       I  A++H R+ +
Sbjct: 468 RMYKAVGIEFFRGHQGYFVYPRIDDSGTSDIRDVTNMFEYLSTRVYPGIPSALLHSRIPE 527

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K  +++ F+      L++T+V+EVGID+ +A+ +++E+A+HFGL+ LHQLRGRVGRG 
Sbjct: 528 QEKMDILERFRRKELMYLVSTSVVEVGIDIPEATCMVVEHADHFGLSALHQLRGRVGRGT 587

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C L+Y  PLS ++  RL VL+ + DGF IAE+DL  R  GE+ G +QSG  +   A
Sbjct: 588 LQSYCFLVYGEPLSDDARQRLLVLRESTDGFRIAEQDLLIRGPGEMTGTRQSGFLRLQFA 647

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                  ++ +ARK+A  +L  DP   S+    IR +L
Sbjct: 648 DLTTDVEIIVVARKEADAVLQADPAFLSLSHSVIRDVL 685


>gi|226305911|ref|YP_002765871.1| ATP-dependent DNA helicase RecG [Rhodococcus erythropolis PR4]
 gi|226185028|dbj|BAH33132.1| ATP-dependent DNA helicase RecG [Rhodococcus erythropolis PR4]
          Length = 758

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 224/752 (29%), Positives = 375/752 (49%), Gaps = 84/752 (11%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    +  L  PL     +GKK +  L +             DLL ++P  +        
Sbjct: 1   MLEELMATLADPLDRL--LGKKTADALDE-----AFEIRTVEDLLRHYPHRYASAGKELA 53

Query: 61  ISEISEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
             E  E   +TI   ++  +  +++ R  +  ++ L   +  + + FF    + +++V  
Sbjct: 54  EKEPPEGEHITIIARVASAAVVKMKNRPGQMLRVSLATDSQTVDVTFFN--PQKVRHVIK 111

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP------------------------ 154
            G +   +G +K  + +  + HP Y+      V                           
Sbjct: 112 PGVRAMFSGTVKYFRGKWSLTHPSYLILPEPRVGEEDSVVPLASIKGAGDLAGLARANQD 171

Query: 155 ------------LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSI 202
                        +  +Y     +      + + + L +L  + E +  +   +  F  +
Sbjct: 172 PGAELDLSVFDRALIPLYPATREVESWTIMRCVRQVLDQLDPIEEPLPAETRAEHGFIGL 231

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKI 261
            EA   +H P   +D E +   ++RL +DE L+ Q+ L + R    + +      V G I
Sbjct: 232 DEALRTVHLPDTKEDIERS---QDRLRFDEALSLQLVLAMRRHDNSERVAPACAPVAGGI 288

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           A +    +PF+ T+ Q++  ++I  D+++ + M R+LQG+VGSGKT+VAL AM   V+AG
Sbjct: 289 ADQFEEMLPFTLTEGQQAVAEEISSDLARPHPMSRLLQGEVGSGKTIVALRAMLQVVDAG 348

Query: 322 GQAVIMAPIGILAQQHYEFIKKYT-----------QNTQIIVEIITGNMPQAHRRKALER 370
            Q  ++AP  +LA QH   ++K                   + ++TG++P A +R AL  
Sbjct: 349 YQCALLAPTEVLANQHARSLRKMMGPLAAGGELGSAEHSTRIALLTGSLPVAAKRAALLE 408

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMT 427
              G A I+IGTHAL QD+++++ L +V+VDEQHRFGV+QR +L  +A     PH+L+MT
Sbjct: 409 AVTGDAGIVIGTHALIQDNVEFFNLGMVVVDEQHRFGVEQRDQLRSRAREGLSPHLLVMT 468

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGK 483
           ATPIPRT+ +T LGD+++S + E P GR PIK+ ++P  +    +D   ER++  ++ G+
Sbjct: 469 ATPIPRTIAMTVLGDLEVSTLRELPRGRTPIKSSVVPAKQKPQWVDRAWERIREDVAAGR 528

Query: 484 KAYWICPQI------------EEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDID 529
           +AY +C +I             E+K+   +S V+ F  L     +   + ++HGR+   +
Sbjct: 529 QAYVVCSRIGDGEQGAGEDQFTEEKQPETKSAVDVFEELSSGPLADLRVGLLHGRLPSDE 588

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+ VM +F  G   +L+ TTV+EVG+DV +A++++I +AE FG++QLHQLRGRVGRG+  
Sbjct: 589 KDVVMSAFNVGDIDVLVCTTVVEVGVDVPNATVMVIVDAERFGVSQLHQLRGRVGRGKHQ 648

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQ 648
             CIL+        +Y RLS +  T DGF +A+ DL  R+EG+ILG  QSG      +  
Sbjct: 649 GLCILVTGSNPGGPAYERLSAVAATNDGFELAQLDLATRREGDILGAAQSGTTSNLRLLS 708

Query: 649 PELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
              H  +LE AR+ A+ I+  DP L      +
Sbjct: 709 LMAHGDILESAREFAQGIVDSDPSLEDHPALA 740


>gi|325290432|ref|YP_004266613.1| ATP-dependent DNA helicase RecG [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965833|gb|ADY56612.1| ATP-dependent DNA helicase RecG [Syntrophobotulus glycolicus DSM
           8271]
          Length = 768

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 228/659 (34%), Positives = 357/659 (54%), Gaps = 22/659 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L   +GVG +    L  +            +LL ++P  +  R  R  I+E+ +  I  +
Sbjct: 107 LQYVKGVGPQRIRQLENL------GIRTVRELLQHYPRRYEIRTSRL-INELQDGEIAVV 159

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
           TG +   S     + +  K+ +      I  ++F +    +   F  G  +++TGK++  
Sbjct: 160 TGTV-SGSQISRGRVKVTKLRIEQDGSYIDAVWFNQ--THIPRQFPAGSVVSITGKVQWN 216

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWIEK 191
           K    ++       N+       I A+Y     L+    + I+  A +++  + PE    
Sbjct: 217 KKVPELLATEIEKGNNDRQRTE-IVAIYPETARLNSKAIRFIMRNASAQIEEIFPEVFPD 275

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           +    + +    EA   IH P      E    ARERL  +E+L  Q+A+  +R       
Sbjct: 276 E--DCQGWLKRPEAIREIHFPSSP---EKAKIARERLIIEEILFFQLAIAELRDPVSGNS 330

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
              +    ++  K L  + F  T++Q+  I +I +DM+    M R++QGDVGSGKT VA+
Sbjct: 331 SPVLQKGKELLHKWLHILEFQLTRAQKRVIGEIFRDMATTRGMTRLVQGDVGSGKTAVAM 390

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A+  AV +G Q  +M P  +LA QHY  + +  Q   +   ++ G+  ++ R + L  +
Sbjct: 391 AALLQAVGSGYQGAMMVPTEVLALQHYHSLTRVFQPLGVRAALLLGSQGKSEREEILVDL 450

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G+  +I+GTHAL QD ++Y+ L LV+ DEQHRFGV+QR +L  K  +PHVL+MTATPI
Sbjct: 451 EQGKIDVIVGTHALIQDQVRYHALGLVVTDEQHRFGVRQRTRLQDKGESPHVLVMTATPI 510

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL LT  GD+ +S I E PAGRKP+ T  +      ++ + L+  ++ G++ + +CP 
Sbjct: 511 PRTLALTLYGDLQLSVIDEMPAGRKPVMTRKMTERSRAQLEKFLEQQVAAGRQIFVVCPL 570

Query: 492 IEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           ++E ++++F S  E+   L E F +  +A++HGRM   +KE VM  F  G   +L++TTV
Sbjct: 571 VQETEKTDFISATEKARVLAERFPAWKVALLHGRMKGQEKEEVMRRFHQGEINILVSTTV 630

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           IEVG++V +A++++IENAE FGLAQLHQLRGRVGRG+  S CIL+     S     RL+V
Sbjct: 631 IEVGVNVPNATVMVIENAERFGLAQLHQLRGRVGRGDHQSFCILVSESRDS----ARLNV 686

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           L  TEDGF IAEEDLK R  GE+LG++Q G  +  +A       L+E A    + IL +
Sbjct: 687 LCETEDGFKIAEEDLKLRGPGELLGLRQHGAAELKLADLARDGRLVEKAYILLQKILKE 745


>gi|315651226|ref|ZP_07904256.1| DNA helicase RecG [Eubacterium saburreum DSM 3986]
 gi|315486522|gb|EFU76874.1| DNA helicase RecG [Eubacterium saburreum DSM 3986]
          Length = 687

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 215/666 (32%), Positives = 353/666 (53%), Gaps = 24/666 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE---- 67
            +   +GVG K + +L K+            DLL ++P  +++     KIS+I ++    
Sbjct: 5   SVKNIKGVGAKTAQYLDKL------GIRTVNDLLKHYPVRYLEYKPPTKISDIKKDDNRD 58

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             V I   +++  +F    ++     L D    I ++++   +  L     +G      G
Sbjct: 59  EDVVIKATVTKSPAFVGSNKKVLTTKLTDYIDVIDVIWYN--SAYLSVTLRQGESYIFVG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP- 186
           K+ + +++  + HP        +      + VY L  G+S +  +K+I  A   +P +  
Sbjct: 117 KMSR-RSKNTLEHPAIYTVEEYEKKIGGYKPVYGLTAGISNNTMEKLIKVAFEYIPKMDF 175

Query: 187 -EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR- 244
            E++ + +++K S      A   IH P           A+ RL++D+       + L++ 
Sbjct: 176 KEYLPQYIIKKNSLADRESAVRNIHCPMNKTAL---FDAKRRLSFDDFFRFLYGIRLLKD 232

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           K+ + +    I  +     +I   +PF  T SQ+  I++IL DMS      R+LQGDVGS
Sbjct: 233 KRLRIKTKNIIADDKNTLDEIKSVLPFKLTASQDDVIEEILHDMSSGIVTNRLLQGDVGS 292

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQA 362
           GKT+VALI +  AV++G Q V+M P  +LA+QH++ +            + I+TG+M + 
Sbjct: 293 GKTVVALICLYMAVKSGFQGVVMVPTEVLAKQHFKSMFDILSKLDKPPNLGILTGSMTKK 352

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
                 E+I  G+  I+IGTHAL  +++++  L LV+ DEQHRFGV+QR  L+ K    H
Sbjct: 353 EHLLMYEKIESGEIDILIGTHALLVENVKFKNLGLVVTDEQHRFGVRQRSTLSGKGENVH 412

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           V++M+ATPIPRTL +   GD+DIS I  KP GR P+K  +I     ++    + + + +G
Sbjct: 413 VIVMSATPIPRTLAIILYGDLDISTIESKPVGRLPVKNAVITEKDREKAYRHILLEVKKG 472

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNG 540
            +AY ICP +E+ +     +V++    + + F     + ++HG+M   +K+ +M  + N 
Sbjct: 473 HQAYIICPMVEDSENIEAENVLDYGKKIADKFSQNCKVEVLHGQMHQKEKDDIMLRYINK 532

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ATTVIEVG+DV +A++I+IENAE FGLA LHQLRGRVGR    S  I +     
Sbjct: 533 EIDILVATTVIEVGVDVPNATVIMIENAERFGLATLHQLRGRVGRSALQSYAIFV-RTSN 591

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           SK +  RL ++ N+ DGF IA +DL  R  GE+ G+ QSG P F IA     + + ++A+
Sbjct: 592 SKLAKKRLEIIGNSNDGFYIASKDLALRGPGELFGLAQSGEPDFGIADIYNDNDVFDMAK 651

Query: 661 KDAKHI 666
           + A  I
Sbjct: 652 EAADMI 657


>gi|86742288|ref|YP_482688.1| DEAD/DEAH box helicase-like protein [Frankia sp. CcI3]
 gi|86569150|gb|ABD12959.1| ATP-dependent DNA helicase RecG [Frankia sp. CcI3]
          Length = 739

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 216/742 (29%), Positives = 362/742 (48%), Gaps = 64/742 (8%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL     VG + +  L+              DLL + P  + +R     ++++    
Sbjct: 12  LDTPLKAL--VGARAAALLA-----DGLELRLVGDLLGHLPRRYHERGELTDLADLVVGE 64

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            VT+   + +     ++  ++   ++ + DG   ++L FF +     +     G      
Sbjct: 65  TVTVQARVEKTERRPMRGTRKSMVRVTVTDGRHSLSLTFFNQS--WRERDLRPGTTALFA 122

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFP--------LIEAVYSLPTGLSVDLFKKIIVEA 178
           GK+ + + +  + +P       ++             +  +Y     +      + +  A
Sbjct: 123 GKVDEFRGQRQLTNPEVQLLEPEESGEAVSGAPFANALVPIYPASAKVPSWTLARCVRLA 182

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L  L  + + +  DL  +   P++AEAF ++H P    +    +  R RL +DE L  Q+
Sbjct: 183 LDSLDPVEDPLPDDLRSRYRLPALAEAFRLVHQPANRGEI---ASGRRRLTWDEALVLQV 239

Query: 239 ALLLMRKQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           AL   R++ +     P              ++PF  T  Q    K I  ++ +   M R+
Sbjct: 240 ALAQRRREVEALATTPRPQRPDGLLAAFDADLPFPLTTGQREVGKTIAAEIGRPVPMHRL 299

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT-----------Q 346
           LQG+VGSGKTLVAL AM   V+ GGQAV++AP   LA QH   +++              
Sbjct: 300 LQGEVGSGKTLVALRAMLTVVDTGGQAVLLAPTETLAAQHSRSLREMLGDLARAGELGAD 359

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           +    V ++TG+M    RR+AL  IA G   +++GTHAL  D + +  L L++VDEQHRF
Sbjct: 360 HRATRVTLVTGSMGGRARREALAEIADGSTGLVVGTHALLHDEVIFNDLGLIVVDEQHRF 419

Query: 407 GVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           GV+QR  L  +    PH+L+MTATPIPRT+ +T  GD+++S++TE PAGR PI T ++P 
Sbjct: 420 GVEQRDALRARGRRPPHLLVMTATPIPRTVAMTVFGDLEVSELTELPAGRSPIGTFVVPA 479

Query: 466 NRI---DEVIERLKVVLSEGKKAYWICPQI---------------------EEKKESNFR 501
           ++    D +  R++  ++ G +AY +CP+I                     + +      
Sbjct: 480 SQRSWTDRMWGRIRDEVAAGHQAYVVCPRIGAGGEDGGGEDDPAESSAAGPDSRASRPAA 539

Query: 502 SVVERFNSLH--EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           +V E    L   E     +  +HGR++   +E+ M+ F  G   +L+ATTVIEVG++V +
Sbjct: 540 TVCEVLPLLVDGEFADLRVEPLHGRLAPGQREATMNRFAAGEVDVLVATTVIEVGVNVPN 599

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A+++++ +A+ FG++QLHQLRGRVGRG     C+L         ++ RLS +  T DG  
Sbjct: 600 ATVMVVLDADRFGVSQLHQLRGRVGRGTAPGWCLLHTAAEPGSPAWERLSAVAATSDGAK 659

Query: 620 IAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
           +A  DL QR+EG++LG  QSG  +   + +    + L+  AR++A  ++  DP L   R 
Sbjct: 660 LARLDLAQRREGDVLGAAQSGGRRSLKLLELLRDEDLIRDAREEAGRLVDDDPGLD--RH 717

Query: 679 QSIRILLYLYQYNEAFQFIRAG 700
            ++R LL     + +  F+  G
Sbjct: 718 PALRRLLDAVLDDTSVAFLEKG 739


>gi|255022098|ref|ZP_05294102.1| ATP-dependent DNA helicase RecG [Acidithiobacillus caldus ATCC
           51756]
 gi|254968456|gb|EET26014.1| ATP-dependent DNA helicase RecG [Acidithiobacillus caldus ATCC
           51756]
          Length = 662

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 238/656 (36%), Positives = 370/656 (56%), Gaps = 12/656 (1%)

Query: 23  YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF 82
            +  L+           R  DLLF+ PS + DR     +  +   +   + G I      
Sbjct: 1   MAARLA------PLGIVRVEDLLFHLPSRYQDRRQLHAMGRLQAGQEAAVLGEILDIRP- 53

Query: 83  QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142
           Q  +R  + ++L D  G +  L F+    ++++ +  GR++   G+++   N + MVHP 
Sbjct: 54  QPGRRPQWCVVLGDDRGAVLQLRFFHWVGVMRSQWRPGRRLWCFGEVRVGGNGLEMVHPE 113

Query: 143 YIFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPS 201
           +   ++ D   P  +   Y    G++   ++     AL+    L + +   L     +PS
Sbjct: 114 WQLADTPDFCLPDRLTPFYPSVAGITQAHWRAWTDAALALSDELLDPLLHLLPA--GWPS 171

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI 261
           +  +   +H    A   +   PAR+RLA DELLA  +AL   R+  +      +   G  
Sbjct: 172 LKASLYRLHRSADAVPGD-ADPARQRLALDELLAHYLALREERRLRRCLPAPVLAAPGAY 230

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            +++ + +PF PT +Q   I +I  D+     M R++QGDVGSGKTLVA+ A+  AVEAG
Sbjct: 231 WERLRQTLPFVPTAAQLRVIAEIRADLGATAPMRRLVQGDVGSGKTLVAVAALLQAVEAG 290

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  +MAP  ILA+Q ++ ++ + QN  +   ++ G+     RR  L  +A G+  I+ G
Sbjct: 291 YQVALMAPTEILARQLHQRLEDWLQNLGLRAGLLLGSCSAKERRPLLRALADGELAIVCG 350

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T ALFQ+ + Y +L LVI+DEQHRFGV+QR +L  K + PH+L++TATPIPRTL +T   
Sbjct: 351 TQALFQEGVDYARLGLVIIDEQHRFGVEQRRRLMAKGSMPHLLILTATPIPRTLAMTLHA 410

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           D+D+S I   P GR+P+ TV++P  R DE+I R++ VL+EG++ YW+C  IE  +    +
Sbjct: 411 DLDLSVIDSLPPGRQPVATVVLPDTRRDELIARMRNVLAEGRQIYWVCQLIENSELLELQ 470

Query: 502 SVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           +  + +  L        I ++HGR+   +K+  M  F  G  ++L+ATTVIEVG+DV  A
Sbjct: 471 AAEDSYTELCRALPEVRIGLVHGRLPAEEKQRRMRDFVGGATQILVATTVIEVGVDVPAA 530

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           S++IIE+AE  GL+QLHQLRGRVGRG   S+CILLY PPLS  +  RL V++++ DGF I
Sbjct: 531 SLMIIEHAERLGLSQLHQLRGRVGRGATQSACILLYRPPLSARARQRLQVIRSSHDGFFI 590

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           A +DL+ R  GE+LG++QSG     +A P   ++LLEI     +++L   P+   V
Sbjct: 591 ARKDLEMRGPGELLGVRQSGERALRVADPLRDEALLEIVPDLGENLLRTQPEAAGV 646


>gi|257095000|ref|YP_003168641.1| ATP-dependent DNA helicase RecG [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047524|gb|ACV36712.1| ATP-dependent DNA helicase RecG [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 691

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 246/699 (35%), Positives = 379/699 (54%), Gaps = 38/699 (5%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
                 L K+         R  DL+ + P  + D      I+E      V +   +   +
Sbjct: 11  PAIRSRLRKL------GIERPDDLVLHLPLRYEDETRVTPIAEAPVGWPVQVEAVVLDVA 64

Query: 81  SFQLQKRRPYKILLNDGTGE---ITLLF--FYRKTEM-LKNVFFEGRKITVTGKIKKLKN 134
             Q   RR     ++D  GE   + L F  FY   +  L+     GR++ + G+I+    
Sbjct: 65  LRQA-PRRQLVARVSDAGGEGSTLFLRFLSFYGSQKSGLEAARDAGRRLRIFGEIRDGFL 123

Query: 135 RIIMVHPHYIFHNSQ--------DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
              MVHP Y F +          D   P +  VY    GL+    +++I  A  R   L 
Sbjct: 124 GREMVHPRYRFLSDDENGGESDVDALPPSLTPVYPSTAGLAQGTLRRLIARA-LRAADLA 182

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLL 242
           E +     ++ + PS+  A   +H+P  A D         PA  R+ +DELLA Q+AL  
Sbjct: 183 ELLADGWREQHALPSLPAAVAFLHSPPPAVDESALQARAHPAWRRIKFDELLAQQLALRR 242

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +    +++    + V G++A+++   +PF+ T +Q     +I  D+ Q + M R+LQGDV
Sbjct: 243 LSLARRRQGAPVLAVAGELARRLQAALPFALTGAQRRVAAEIATDLEQAHPMQRLLQGDV 302

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G GKT+VA +A   A+EAG Q   MAP  ILA+QHY  ++ + +   I V  + G++   
Sbjct: 303 GCGKTIVAALAACQAIEAGYQTAFMAPTEILAEQHYSKLRAWLEPLGIEVSWLAGSLGGK 362

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R +A  +     A +++GTHAL Q+SI + +L L IVDEQHRFGV QRL+L +K   PH
Sbjct: 363 AR-QAKRQQVATSAQLVVGTHALIQESIDFARLGLAIVDEQHRFGVVQRLELRRKGVNPH 421

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+M+ATPIPRTL ++   D+D+S I E P GR P+KT +    R  EVI  ++ V++ G
Sbjct: 422 QLMMSATPIPRTLAMSYYADLDVSVIDELPPGRSPVKTRLFSDTRRAEVIAAVRAVVAGG 481

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++AYW+CP +EE  +   ++ ++ + +L    +   + ++HGR+   +K SVM +F  G 
Sbjct: 482 RQAYWVCPLVEESAKLELQAALDTWAALTAELSDLRVGLVHGRLKGDEKASVMAAFVAGE 541

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ATTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG E S C+LLY  PLS
Sbjct: 542 IDVLVATTVIEVGVDVANASLMVIEHAERFGLSQLHQLRGRVGRGAEESVCVLLYQQPLS 601

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           + +  RL ++    DGF IA +DL+ R  GE +G +QSG+P    A  E    L+E+A++
Sbjct: 602 RTARARLKIIFEHTDGFEIARQDLRLRGPGEFIGSRQSGVPLLRYADLESDADLVELAQQ 661

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQY-NEAFQFIRA 699
            A   L  DP+         R+  +L ++  +  + +RA
Sbjct: 662 MAVQWLRNDPE---------RVGRHLRRWFGQREELLRA 691


>gi|14572554|gb|AAK64611.1| RecG [Burkholderia cepacia]
          Length = 655

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 226/629 (35%), Positives = 348/629 (55%), Gaps = 33/629 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      I E+    I    G +   + 
Sbjct: 36  KTADKLAKL------GLTRSIDLVLHLPMRYEDETTLTPIDELLPGGIAQTEGVVFD-NE 88

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + + D  G ++ L F       +K +   G+++ V G ++     + MVH
Sbjct: 89  VAYRPRRQLVVKIRDDDGAQLVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGMEMVH 147

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P      +      ++  VY    G+S    +K I  A+ R P LPE +  ++    L+ 
Sbjct: 148 PAVRVVEADAPLPQVLTPVYPSTAGVSQAYLRKAIENAVERTP-LPELLPPEIERDYLKP 206

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P++A+A  I+H+P    D     + + PA  R+ ++ELLA Q++L    ++ +    
Sbjct: 207 LGVPTLAQAVRILHHPGVDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRSA 266

Query: 253 IPINVE-----GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
             +        G +  ++   +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT
Sbjct: 267 PAMPRRAADDAGSLTTRLYAALPFTLTGAQSRVVDEIAHDLTLPHPMQRLLQGDVGSGKT 326

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A   A++AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A
Sbjct: 327 VVAALAATQAIDAGYQAALMAPTEILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAA 386

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-------- 419
           +E  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA         
Sbjct: 387 IEAAALGTAQLVIGTHAIIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAANGARD 446

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL +T   D+++S I E P GR P+ T ++   R  EVI R++  
Sbjct: 447 FQPHQLMMSATPIPRTLAMTYYADLEVSTIDELPPGRTPVLTRLVADARRGEVIARVREA 506

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
              G++ YW+CP IEE +    ++ VE + +L        + ++HGR+S  DK +VMD+F
Sbjct: 507 ALTGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAF 566

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 567 TRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYS 626

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
            PLS     RL  ++ T DGF IA  DL+
Sbjct: 627 GPLSLAGRERLKTMRETTDGFEIARRDLE 655


>gi|168214207|ref|ZP_02639832.1| ATP-dependent DNA helicase RecG [Clostridium perfringens CPE str.
           F4969]
 gi|170714286|gb|EDT26468.1| ATP-dependent DNA helicase RecG [Clostridium perfringens CPE str.
           F4969]
          Length = 690

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 229/667 (34%), Positives = 367/667 (55%), Gaps = 28/667 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFI----DRHYRPKISEI 64
           ++  +   +GVG K    L+K+           +DLL Y P  +     D      IS+ 
Sbjct: 16  IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFPRDYEFLNDDISLNGDISD- 68

Query: 65  SEERIVTITGYISQH-SSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
                  +   +  + SS + +  +    I       ++   +F +    +K  F  G +
Sbjct: 69  ---EKAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQ--PYIKRNFILGNE 123

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             + GK KK+ N + +++P       ++ N   I  +Y+L  GL+  +  K+I E L  +
Sbjct: 124 YNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINEILKNM 180

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            ++ E + +++++K    S+ +A   IH P    + +       RL + EL    + +++
Sbjct: 181 -IIKENLPEEIVKKYKLISLDKAIRSIHFPEGRGELQSAIN---RLKFQELFTYSLKIIM 236

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M+   KKE          + + +  ++P++ T +Q   +++IL D  +   M R++QGDV
Sbjct: 237 MKAHIKKENSGISFKMSPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNRLVQGDV 296

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVALI+M      G Q V+MAP  ILA QHY   KKY +   + +E++TG+  + 
Sbjct: 297 GSGKTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLEQFGVDIELLTGSTKEK 356

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +++  E+IA G+  ++IGTHAL QD ++   L LV+ DEQHRFGV+QR +L  K     
Sbjct: 357 EKKRIKEKIASGKGIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLINKNKRAD 416

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL L    D+DIS I E P GRKPI T+++ +N+  +        + +G
Sbjct: 417 VLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFALKEVEKG 476

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNG 540
           ++ Y + P IEE ++ N  SV + +  L         I I+HG+MS  DK+ ++++FKNG
Sbjct: 477 RQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMSGKDKDKIINTFKNG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRG+  S CIL+ +   
Sbjct: 537 EIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGKHKSYCILIANTKN 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
                 R+ ++  + DGF IAEEDLK R  GE+ G++Q G   F++A      ++L+ A 
Sbjct: 597 DIT-RRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVDDINILKCAN 655

Query: 661 KDAKHIL 667
            +AK I+
Sbjct: 656 HEAKLIV 662


>gi|297617077|ref|YP_003702236.1| ATP-dependent DNA helicase RecG [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144914|gb|ADI01671.1| ATP-dependent DNA helicase RecG [Syntrophothermus lipocalidus DSM
           12680]
          Length = 687

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 217/688 (31%), Positives = 361/688 (52%), Gaps = 21/688 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L+ L   +   +GVG      L ++            D+L++ P  + D      + +I 
Sbjct: 5   LSYLEKSIRFIKGVGPGRFASLQRL------GIESVWDMLWHVPRHYFDWAAAKGLDQIR 58

Query: 66  EERIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
             ++ T+ G +   S +   +     K  L DG   I  ++F ++   +K V   G  I 
Sbjct: 59  VGQVNTVKGIVKSISLTKSARGTVVVKAWLEDGNAGIVAVWFNQR--YIKQVLHPGIPIL 116

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRL- 182
           VTGK+  ++    +    Y   NS    + + I   Y    GL+  + + I  + +    
Sbjct: 117 VTGKVNMIRGNPELWVSQYETLNSGSPAYRVGIVPFYPSTEGLNQRVLRSIAYQVVQEYA 176

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
              P+ I+    ++     I  A   +H P+   D E   PAR RLA++ELL  Q  +  
Sbjct: 177 EKYPDIIDPVARKRIGLIDIESAIRNLHFPKNVLDVE---PARRRLAFEELLLWQWNVRQ 233

Query: 243 MRKQFKKEIG---IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           ++ + + E+    +      ++ ++++  +PF  TK+Q   + +I  D+++ + M R+LQ
Sbjct: 234 LKNRARGELKGRGVAHLGGDELVEQVISALPFQLTKAQRRVLAEIRDDLTRPDPMNRLLQ 293

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA +A A     G Q   MAP  ILA QHY  + +      I V ++TG  
Sbjct: 294 GDVGSGKTVVAALAAAKMAGDGYQIAFMAPTEILAVQHYNSLLRLVSRVPIRVALLTGKT 353

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKA 418
           P + +RK +E     +  I++GTHAL  D++++ +L LV++DEQ RFGV+QR  L  +  
Sbjct: 354 PYSEKRKIVEMAKRHELDILVGTHALITDTVEFARLGLVVIDEQQRFGVKQRASLVGKGK 413

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P  L+M+ATPIPRTL L   GD+D+S I E P GRK ++T  I      ++ + ++  
Sbjct: 414 GYPDTLVMSATPIPRTLALALCGDMDVSIIDEIPPGRKRVRTFFITEAAKSKLYQFIRRQ 473

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDS 536
           +++G++ Y +CP +EE ++ +  +       L         + ++HGRM   +KE+V + 
Sbjct: 474 VNKGRQVYIVCPLVEESEKQDLLAATSLQQELANCVFPELRVGLLHGRMKSPEKEAVAER 533

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G   +L+ T+VIEVGIDV +A+++++E+AE FGLAQLHQLRGRVGRG + S CIL+ 
Sbjct: 534 FRQGLIDILVTTSVIEVGIDVANATVMVVEHAERFGLAQLHQLRGRVGRGGDQSYCILVG 593

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            P  ++ +  RL +++ T DGF IA  DL+ R  G+  G++Q G+P+F +A       LL
Sbjct: 594 DPK-TEEARARLKLMETTNDGFEIARADLEMRGPGDFWGVRQHGLPQFRVADLGRDTHLL 652

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRIL 684
           +   ++    LT + DL     +  R+ 
Sbjct: 653 KTVHREIAAGLTLNEDLAKALSRLHRME 680


>gi|269122133|ref|YP_003310310.1| ATP-dependent DNA helicase RecG [Sebaldella termitidis ATCC 33386]
 gi|268616011|gb|ACZ10379.1| ATP-dependent DNA helicase RecG [Sebaldella termitidis ATCC 33386]
          Length = 688

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 242/673 (35%), Positives = 370/673 (54%), Gaps = 22/673 (3%)

Query: 7   NPLFAPLSTFR--GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           N LF  L   +  G+GK     L+K+      N     DLL++ P ++ DR     ISE+
Sbjct: 4   NLLFKNLDELKIKGLGKANVSKLNKL------NVRTLYDLLYFFPRAYEDRSNSKNISEV 57

Query: 65  SEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
             +  V + G I + S+  ++  R  Y+  L D TG I L +F  +   ++     G ++
Sbjct: 58  LPDEFVVLKGKILKASNNYIKGGRYMYRAWLGDDTGVIELTWFNNR--FVQKNIKIGDEM 115

Query: 124 TVTGKIKKLKNRIIMVHPHYI-FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA-LSR 181
            V GK KK   R+ +V+P Y     +  +    I  +YS  + L     +KII EA L+ 
Sbjct: 116 IVYGKAKKG-MRMQIVNPEYKNVSVASLLPGNQILPIYSSTSSLKQGDLRKIIHEAILNF 174

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
             +L E +  +L++K+      +A   +H P      +    A  R   +E+   ++ +L
Sbjct: 175 GYLLEENLPDELMKKEGLLPRKDAVINVHFPENE---QLKQKALRRFMLEEIFLLEMGIL 231

Query: 242 LMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             R +  K       I    ++ ++ +R +P+  T++Q+  IK+I  ++ +   + R++Q
Sbjct: 232 QSRFEVDKANKGLYKIENNKELVKQFIRELPYELTRAQKKVIKEIYNELVKGKILNRLIQ 291

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+V+LI +   VE   Q  IMAP  ILA QHY  I     N  + VE++TG++
Sbjct: 292 GDVGSGKTIVSLIMLLYMVENNYQGAIMAPTEILATQHYLGIVDEFNNLNVRVELLTGSV 351

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R K L+ I  G   I+IGTHAL ++ I ++ L L+I+DEQHRFGV QR  L  K  
Sbjct: 352 KGKKREKLLKEIEAGLVDIVIGTHALIENDIVFHSLGLIIIDEQHRFGVVQRKLLRDKGE 411

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEVIERLKVV 478
             ++++M+ATPIPR+L LT  GD+D+S I E PAGRK IKT  I      +++ + +K  
Sbjct: 412 LANLIVMSATPIPRSLALTIYGDLDVSVIDELPAGRKQIKTKWIKDQEEKNKMYDFIKEK 471

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           + EG++ Y + P IEE +  N +S    F    E F    IA+IHGRM + DK+ VM+ F
Sbjct: 472 IREGRQVYVVSPLIEESETLNVKSAESTFEEYSEIFKGMEIALIHGRMKNKDKQEVMEKF 531

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + G   +L++TTVIEVG++V +A+I++I +A+ FGL+ LHQLRGRVGRGE  S C L   
Sbjct: 532 RKGNLNILVSTTVIEVGVNVPNATIMVIRDAQRFGLSSLHQLRGRVGRGEYRSYCFL-ES 590

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             +++ S  RL +++NT DGF IAEEDLK R  GEI G KQSG+   L+     +   ++
Sbjct: 591 ETINEISEKRLEIMENTIDGFKIAEEDLKLRNSGEIFGTKQSGVSDLLLTDIIKNIKEIK 650

Query: 658 IARKDAKHILTQD 670
             R      L ++
Sbjct: 651 YIRDFVLKYLEEN 663


>gi|262037471|ref|ZP_06010931.1| ATP-dependent DNA helicase RecG [Leptotrichia goodfellowii F0264]
 gi|261748506|gb|EEY35885.1| ATP-dependent DNA helicase RecG [Leptotrichia goodfellowii F0264]
          Length = 691

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 237/677 (35%), Positives = 365/677 (53%), Gaps = 26/677 (3%)

Query: 7   NPLFAPLST--FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           N LF  L     +GVGK      +K+            DL ++ P ++ D+     ISEI
Sbjct: 5   NLLFKSLEEFKIKGVGKVALNKFNKL------GVYTLYDLFYFFPRAYEDKANSKNISEI 58

Query: 65  SEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
             E  V I G +    + +    R  ++ +L D TG I L++F  +   +KN    G ++
Sbjct: 59  LPEEFVAIKGTVVNAVNQYIKSGRTMFRAMLRDETGIIELVWFNNR--FIKNSIKIGDEL 116

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQ-----DVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            V GK+K+   +  MV+P Y    S      +     I  +Y     L  +  +KI+ EA
Sbjct: 117 QVYGKVKRA-AKFQMVNPEYKKIQSDGMIRGEARHEQILPIYPSTASLRQEAIRKIVNEA 175

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L     +L E I +DLL+K S  S  EA   IH P + +       A++R   +E+L  +
Sbjct: 176 LLDYGYLLQENIPEDLLKKGSLISRKEAILNIHFPEEFE---KKEKAKKRFMIEEILLLE 232

Query: 238 IALLLMRKQF--KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L  R +   +      +    K+  K + ++ +  TK+Q+  I +I +++     + 
Sbjct: 233 MGILQNRFEMDKENNNIYELEDNKKLVSKFIESLEYELTKAQKKVISEIYKELKSGKIVN 292

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++QGDVGSGKT+VALI +    E   Q VIMAP  ILA QHY  I     +  + VE++
Sbjct: 293 RLIQGDVGSGKTIVALIMLLYMAENSYQGVIMAPTEILATQHYLGIVDIFNDLDVRVELL 352

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++    R K L  I +G   I+IGTHAL ++ + +  L L+++DEQHRFGV QR  L 
Sbjct: 353 TGSVKGKKREKLLSEIENGLVDIVIGTHALIENDVVFKNLGLIVIDEQHRFGVVQRKLLR 412

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINRIDEVIER 474
           +K +  ++++M+ATPIPR+L LT  GD+D+S I E P+GR PIKT  I  ++  +++   
Sbjct: 413 EKGSIANLIVMSATPIPRSLALTIYGDLDVSIIDELPSGRMPIKTKWIRDLDEKNKMYNF 472

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESV 533
           ++  + EG++ Y + P IEE +  N +S  + F    E F    + +IHGR +  +K+ V
Sbjct: 473 IERKIKEGRQVYVVSPLIEESETLNVKSAQQTFEEYSEIFSNRRLGLIHGRQNYKEKQEV 532

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FK     +LI+TTVIEVG++V +ASI++I +A+ FGL+ LHQLRGRVGRG+  S C 
Sbjct: 533 MRKFKKHEIDILISTTVIEVGVNVPNASIMVIRDAQRFGLSSLHQLRGRVGRGKYQSYCF 592

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           L      +  S  RL V++ T DGF IAEEDLK R  GEILG +QSG+   ++     + 
Sbjct: 593 L-ESETDNDLSMKRLQVMEKTTDGFKIAEEDLKLRNSGEILGTRQSGVSDMVLTDIVKNV 651

Query: 654 SLLEIARKDAKHILTQD 670
             ++  R      L ++
Sbjct: 652 KEIKAIRDYVVDYLEKN 668


>gi|237738008|ref|ZP_04568489.1| ATP-dependent DNA helicase recG [Fusobacterium mortiferum ATCC
           9817]
 gi|229419888|gb|EEO34935.1| ATP-dependent DNA helicase recG [Fusobacterium mortiferum ATCC
           9817]
          Length = 684

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 225/672 (33%), Positives = 374/672 (55%), Gaps = 21/672 (3%)

Query: 7   NPLFAPLSTFR-GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           N ++ PL     G+  K    L K+            D+L+Y P ++ DR    KI E+ 
Sbjct: 5   NTIYWPLENIDIGIDAKNLKKLEKL------GIKSIADMLYYFPRAYDDRTNIKKIGELR 58

Query: 66  EERIVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            E  V +   +   ++   +   +  K    DG+G I L++F  +   L+     G +  
Sbjct: 59  GEEYVVLKATLMTVTAPPTRSGLKMVKATATDGSGIIELVWF--QMPYLRKTLKIGEEYI 116

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQD-VNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRL 182
             G++K+      +V+P +   ++Q  ++   I  +YS    L  +  +K++ + L + L
Sbjct: 117 FIGQVKRG-YIFQIVNPEFKLSSNQKRLDEGEILPIYSSSKELPQNSLRKLMEKMLNTTL 175

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            V+ E I +++++K       EA   IH P+ +K+ E     + R A +ELL  ++ +L 
Sbjct: 176 AVIEENIPEEIIKKYKLMGRKEALREIHFPKNSKNLEEA---KRRFAVEELLVLEMGILQ 232

Query: 243 MRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            R +   +     ++E K    +  L ++PF  T +Q+  I +I +D++    + R++QG
Sbjct: 233 KRFEVDNQNIERYHLEDKKTLVKAYLSSLPFELTNAQKRVITEIYKDLANGRVVNRLVQG 292

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT V+++ +   +E   Q V+MAP  ILA QHY  +K   +   + VE++TG+  
Sbjct: 293 DVGSGKTAVSMVLLLYMLENSYQGVLMAPTEILAVQHYLSVKDKFEKLGVRVELLTGSFT 352

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++ LE IA+G   I+IGTHAL ++S+ +++L ++I+DEQHRFGV QR  L  K   
Sbjct: 353 GKKKQRLLEDIANGDVGIVIGTHALIEESVVFHRLGMIIIDEQHRFGVLQRKALRDKGVL 412

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVL 479
            ++++M+ATPIPR+L L+  GD+D+S I E P GRKPI+T  I  +  I+ + + +   L
Sbjct: 413 ANLVVMSATPIPRSLALSIYGDLDVSVIDELPPGRKPIRTKWIATDEEIETMYDFIDKKL 472

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFK 538
           S+G++AY+I P IEE ++ + +S  E    + +      I ++HG+M + +K+ +M  FK
Sbjct: 473 SQGRQAYFIAPLIEESEKLSAKSTAELMEEVEKFLPNYKIGVLHGKMKNSEKDEIMSRFK 532

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +L++TTVIEVG+DV ++SII+I NAE FGL+ LHQLRGRVGRG+  S C L+   
Sbjct: 533 NKELDILVSTTVIEVGVDVPNSSIIVINNAERFGLSALHQLRGRVGRGQYQSYCFLVSKT 592

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             +  S  RL V++ T+DGF IAEEDL+ RK GEI G +QSG+              +++
Sbjct: 593 D-NATSKARLQVMEETQDGFKIAEEDLRLRKSGEIFGTRQSGLSDLKFVDIVHDVKTIKL 651

Query: 659 ARKDAKHILTQD 670
            +      L ++
Sbjct: 652 VKDICYEYLKEN 663


>gi|157803559|ref|YP_001492108.1| ATP-dependent DNA helicase RecG [Rickettsia canadensis str. McKiel]
 gi|157784822|gb|ABV73323.1| ATP-dependent DNA helicase RecG [Rickettsia canadensis str. McKiel]
          Length = 705

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 260/680 (38%), Positives = 374/680 (55%), Gaps = 35/680 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+ + TF  + +     L ++            DLLFY P S+ ++   P ++++ +  
Sbjct: 9   LFSSVKTFINIREDTVSALKRL------GINNIRDLLFYIPVSYQNKTLSPNLTKVRDGE 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+     + +  S      +P KI   + TG + L+FF+R    + N    G    ++GK
Sbjct: 63  IIQTE-IVIESISLPKNSNQPLKITARNDTGSLLLVFFHRPPPFIFNKLKVGTSHIISGK 121

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP----- 183
           ++   + + + HP +I + +       IE +YSL   LS       I++A+         
Sbjct: 122 VQFFDHHLQISHPEFIVNPTLAKE---IEPIYSLTYLLSNKQLYSYIIKAMDIFERKCKG 178

Query: 184 ----VLPEWIEKDLLQK----KSFPSIAEAFNIIHNPRKAKDFEWTSPA----RERLAYD 231
                + ++++  +LQ      S   + ++ N        K ++ T       ++ LA  
Sbjct: 179 LEDKEVKDYLD-SILQNLKVLHSLCHLRKSRNSEKMDIMVKSWDDTRVCLNNAKKHLAAK 237

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           EL+A QI+L  +R Q  +  G            IL  + F  T  Q+  I++I  D S K
Sbjct: 238 ELIANQISLFNVRTQISRRQGNIFPKAAGPQVNILNELGFELTPYQKQVIEEIELDQSDK 297

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M+R+LQGDVGSGKTLVAL+ M     AG QA +MAP  +LA QHYEF  K  +NT I 
Sbjct: 298 VEMMRLLQGDVGSGKTLVALLTMVNVAVAGFQATLMAPTDLLANQHYEFFVKALKNTNIR 357

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V ++TG +    R+  + ++ +G+  I++GTHALFQ+ + + KL  +++DEQHRFGVQQR
Sbjct: 358 VGLLTGKILGLARKNIMIQLENGEIEILLGTHALFQEKVSFKKLGYIVIDEQHRFGVQQR 417

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           L L  K   P VL+MTATPIPR+L LT  GD+ ISK+  KP  R PI T I+  N+I+ V
Sbjct: 418 LNLINKGVNPDVLVMTATPIPRSLALTMFGDMTISKLQGKPKNRLPIATNIMSTNKIEHV 477

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSV------VERFNSLHEHFTSSIAIIHGRM 525
           IE +   L  G++ YWICP IE  K+            + RFNS+   +     IIHG+M
Sbjct: 478 IEAINKKLILGERIYWICPLIERGKQEEQEDDSVLMDVMNRFNSIENIYQGYTGIIHGKM 537

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            +  K+ +M  FK G  K+L+ATTVIEVGIDV +A++IIIENAE FGLAQLHQLRGRVGR
Sbjct: 538 KNEQKDIIMKQFKEGEIKILVATTVIEVGIDVPEATLIIIENAEQFGLAQLHQLRGRVGR 597

Query: 586 GEEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           G   S CILLY+P  L + +  R  +++ T DGF IAE+DLK R  GEILG+KQSG  +F
Sbjct: 598 GNLQSYCILLYNPKRLGQVARGRFEIMQQTNDGFYIAEQDLKLRGSGEILGVKQSGEIEF 657

Query: 645 LIAQPELHDSLLEIARKDAK 664
             A    H  LL  A K A+
Sbjct: 658 FFADLAEHYDLLLKANKFAE 677


>gi|229491419|ref|ZP_04385243.1| ATP-dependent DNA helicase RecG [Rhodococcus erythropolis SK121]
 gi|229321704|gb|EEN87501.1| ATP-dependent DNA helicase RecG [Rhodococcus erythropolis SK121]
          Length = 753

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 223/747 (29%), Positives = 374/747 (50%), Gaps = 84/747 (11%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  PL     +GKK +  L +             DLL ++P  +          E  
Sbjct: 1   MATLADPLDRL--LGKKTADALDE-----AFEIRTVEDLLRHYPHRYASAGKELAEKEPP 53

Query: 66  EERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           E   +TI   ++  +  +++ R  +  ++ L   +  + + FF    + +++V   G + 
Sbjct: 54  EGEHITIIARVASAAVVKMKNRPGQMLRVSLATDSQTVDVTFFN--PQKVRHVIKPGVRA 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP----------------------------- 154
             +G +K  + +  + HP Y+      V                                
Sbjct: 112 MFSGTVKYFRGKWSLTHPSYLILPEPRVGEEDSVVPLASIKGAGDLAGLARANQDPGAEL 171

Query: 155 -------LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207
                   +  +Y     +      + + + L +L  + E +  +   +  F  + EA  
Sbjct: 172 DLSVFDRALIPLYPATREVESWTIMRCVRQVLDQLDPIEEPLPAETRAEHGFIGLDEALR 231

Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIAQKIL 266
            +H P   +D E     ++RL +DE L+ Q+ L + R    + +      V G IA +  
Sbjct: 232 TVHLPDTKEDIERA---QDRLRFDEALSLQLVLAMRRHDNSERVAPACAPVAGGIADQFE 288

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             +PF+ T+ Q++  ++I  D+++ + M R+LQG+VGSGKT+VAL AM   V+AG Q  +
Sbjct: 289 EMLPFTLTEGQQAVAEEISTDLARPHPMSRLLQGEVGSGKTIVALRAMLQVVDAGYQCAL 348

Query: 327 MAPIGILAQQHYEFIKKYT-----------QNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           +AP  +LA QH   ++K                   + ++TG++P A +R AL     G 
Sbjct: 349 LAPTEVLANQHARSLRKMMGSLAAGGELGSAEHSTRIALLTGSLPVAAKRAALLEAVTGD 408

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIP 432
           A I+IGTHAL QD+++++ L +V+VDEQHRFGV+QR +L  +A     PH+L+MTATPIP
Sbjct: 409 AGIVIGTHALIQDNVEFFNLGMVVVDEQHRFGVEQRDQLRSRAREGLSPHLLVMTATPIP 468

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWI 488
           RT+ +T LGD+++S + E P GR PIK+ ++P  +    +D   ER++  +++G++AY +
Sbjct: 469 RTIAMTVLGDLEVSTLRELPRGRTPIKSSVVPAKQKPQWVDRAWERIREDVADGRQAYVV 528

Query: 489 CPQI------------EEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVM 534
           C +I             E+K+   +S V+ F  L     +   + ++HGR+   +K+ VM
Sbjct: 529 CSRIGDGEQGAGEDQFTEEKQPETKSAVDVFEELSSGPLADLRVGLLHGRLPSDEKDVVM 588

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F  G   +L+ TTV+EVG+DV +A++++I +AE FG++QLHQLRGRVGRG+    CIL
Sbjct: 589 SAFNVGDIDVLVCTTVVEVGVDVPNATVMVIVDAERFGVSQLHQLRGRVGRGKHQGLCIL 648

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHD 653
           +        +Y RLS +  T DGF +A+ DL  R+EG+ILG  QSG      +     H 
Sbjct: 649 VTGSNPGGPAYERLSAVAATNDGFELAQLDLATRREGDILGAAQSGTTSNLRLLSLMAHG 708

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQS 680
            +LE AR+ A+ I+  DP L      +
Sbjct: 709 DILESAREFAQGIVDSDPSLDGHPALA 735


>gi|18310713|ref|NP_562647.1| ATP-dependent DNA helicase RecG [Clostridium perfringens str. 13]
 gi|18145394|dbj|BAB81437.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13]
          Length = 690

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 229/667 (34%), Positives = 367/667 (55%), Gaps = 28/667 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFI----DRHYRPKISEI 64
           ++  +   +GVG K    L+K+           +DLL Y P  +     D      IS+ 
Sbjct: 16  IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFPRDYEFLNDDISLNGDISD- 68

Query: 65  SEERIVTITGYISQH-SSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
                  +   +  + SS + +  +    I       ++   +F +    +K  F  G +
Sbjct: 69  ---EKAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQ--PYIKRNFILGNE 123

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             + GK KK+ N + +++P       ++ N   I  +Y+L  GL+  +  K+I E L  +
Sbjct: 124 YNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINEILKNM 180

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            ++ E + +++++K    S+ +A   IH P    + +       RL + EL    + +++
Sbjct: 181 -IIKENLPEEIVKKYKLISLDKAIRSIHFPEGRGELQSAIN---RLKFQELFTYSLKIIM 236

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M+   KKE          + + +  ++P++ T +Q   +++IL D  +   M R++QGDV
Sbjct: 237 MKAHIKKENSGISFKMSPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNRLVQGDV 296

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVALI+M      G Q V+MAP  ILA QHY   KKY +   + +E++TG+  + 
Sbjct: 297 GSGKTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLEQFGVDIELLTGSTKEK 356

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +++  E+IA G+  ++IGTHAL QD ++   L LV+ DEQHRFGV+QR +L  K     
Sbjct: 357 EKKRIKEKIASGKGIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLINKNKRAD 416

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL L    D+DIS I E P GRKPI T+++ +N+  +        + +G
Sbjct: 417 VLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFALKEVEKG 476

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNG 540
           ++ Y + P IEE ++ N  SV + +  L         I I+HG+M+  DK+ ++++FKNG
Sbjct: 477 RQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDIRIEILHGKMAGKDKDKIINTFKNG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE  S CIL+ +   
Sbjct: 537 EIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCILIANTKN 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
                 R+ ++  + DGF IAEEDLK R  GE+ G++Q G   F++A      ++L+ A 
Sbjct: 597 DIT-RRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVDDINILKCAN 655

Query: 661 KDAKHIL 667
            +AK I+
Sbjct: 656 HEAKLIV 662


>gi|254392467|ref|ZP_05007647.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC
           27064]
 gi|197706134|gb|EDY51946.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC
           27064]
          Length = 741

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/742 (30%), Positives = 364/742 (49%), Gaps = 71/742 (9%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-- 77
           G   +  L               DLL ++P  + +R    +++E+  +  VT+   ++  
Sbjct: 10  GPASAKVL-----GEQLGLRTVGDLLHHYPRRYEERGRLTRLAELPLDEEVTVVAQVADA 64

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
           +  +F   + +  ++ + DG+G + L+FF R           G +    G++     ++ 
Sbjct: 65  RVHTFNGGRGKRLEVTITDGSGRLQLVFFGRGVHKPHQELLPGTRAMFAGRVSVFNRKLQ 124

Query: 138 MVHPHY---------------IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           + HP Y                   + D     +  +Y    G+      K +   L R 
Sbjct: 125 LAHPSYAKLGTGDGADGGGGHDDGTAVDSWAGALIPIYPACKGMESWKIAKAVDAVLPRR 184

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
               + +   L + + F  + EA   +H PR   D E     R+RL +DE    Q+AL  
Sbjct: 185 TEATDPLPPALREGRGFVPLPEALLKVHRPRTKADIEAA---RQRLKWDEAFVLQVALAR 241

Query: 243 MRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            R    +   +      G I       +PF+ T+ Q     +I  D++ ++ M R+LQG+
Sbjct: 242 RRFADTQLPAVARRPAPGGILDAFDARLPFTLTEGQRKVTGEIFGDLATEHPMHRLLQGE 301

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-----------I 350
           VGSGKTLVAL AM A V+AGGQA ++AP  +LAQQH+  + +   +              
Sbjct: 302 VGSGKTLVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSVVEMMGDLADGGTLGAPDGAT 361

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V ++TG+M  A RR AL  +  G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+Q
Sbjct: 362 KVVVLTGSMGAAARRAALLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQ 421

Query: 411 RLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467
           R  L  +    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI + ++P     
Sbjct: 422 RDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPARDKP 481

Query: 468 --IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV--------------------- 504
             +    ER++  + +G +AY +CP+I +++E    +                       
Sbjct: 482 HFLARAWERVREEVGKGHQAYVVCPRIGDEEEGTGAAAKSGRKAADEEAQAADAEKRPPL 541

Query: 505 ---ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              E    L     +   I ++HGRM   DK++VM  F  G   +L+ATTVIEVG++V +
Sbjct: 542 AVLEIAEELERGPLAGLRIGVLHGRMPPEDKDAVMRRFTAGEVDVLVATTVIEVGVNVPN 601

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A+ ++I +A+ FG++QLHQLRGRVGRG     C+L+   P +  +  RL  +  T DGF 
Sbjct: 602 ATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPAASPARARLGAVAATLDGFE 661

Query: 620 IAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
           ++  DL+QR+EG++LG  QSG      +      + ++  AR++A   +  DP+L    G
Sbjct: 662 LSRIDLEQRREGDVLGQAQSGARSSLRMLAVIEDEEVIAAAREEAVRTVRADPELEHTPG 721

Query: 679 QSIRILLYLYQYNEAFQFIRAG 700
             + +   L +  E  Q++  G
Sbjct: 722 LRLALDALLDK--EREQYLDKG 741


>gi|46199206|ref|YP_004873.1| DNA helicase recG [Thermus thermophilus HB27]
 gi|46196831|gb|AAS81246.1| DNA helicase recG [Thermus thermophilus HB27]
          Length = 770

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 218/682 (31%), Positives = 356/682 (52%), Gaps = 21/682 (3%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
            +    L+++            D+L ++P  + DR   P    + E +  T+   +    
Sbjct: 104 PQSRRKLAEL------GLRTVRDVLHHYPRRYEDRRTLPGARYLEEGQKATLAVKVLAKE 157

Query: 81  SFQLQKRRP--YKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
             +  ++     ++   D  G  ITL++F +    + +   EG  + VTG++ + +N + 
Sbjct: 158 LVKTPRKGMQLVQVKAQDAWGWRITLVWFNQ--PWVLSQIEEGATLIVTGRVGR-RNGLQ 214

Query: 138 MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197
           +   H+    ++ ++   I  +Y    G+S    ++ +  AL     LP+ + +   +  
Sbjct: 215 LYVEHFEDEGTESLSTGRIVPIYPAKEGVSQAFLRRTVHRALELALPLPDPL-EAYREDL 273

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
                AEA   IH P   +D E    A  RL +DE L  ++  LL        +G    V
Sbjct: 274 GLMPYAEALKAIHFP---EDEEALKRALLRLKFDEYLLLELKALLE--AGGMVLGRSFRV 328

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           E    +   + +PF  T++QE  + +I +DM    +M R+LQGDVGSGKT+VA  A+  A
Sbjct: 329 EEAWVEAFKKALPFPLTRAQERVMGEIAKDMQSPRQMARLLQGDVGSGKTVVAAFALFLA 388

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
            + G Q  +MAP  ILA+QHY+ + +Y     I VE++ G+M    +  A+ R+  G+A 
Sbjct: 389 AKNGAQGALMAPTEILARQHYQNLTRYLFPLGIRVELLLGSMTAKEKEAAMARLLSGEAQ 448

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIPRTLV 436
           + +GTHAL Q+ + +  L L +VDE+HRFGV Q R  L      P VL+M+ATPIPR+L 
Sbjct: 449 VAVGTHALIQEGVGFRDLGLAVVDEEHRFGVLQRRALLKLAKAPPDVLVMSATPIPRSLA 508

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           LT  GD+++S + E P GR P+KT ++P     +     +  + +G + + + P IEE +
Sbjct: 509 LTLYGDLEVSVLDEMPPGRVPVKTKVLPHRLRLQAYAFAREEVRKGHQVFVVAPAIEESE 568

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           E + ++    +  L        +A++HGRM   +K+ VM++F+ G   LL++TTV+EVG+
Sbjct: 569 ELDLKAATTLYEELKGLLPGVRLALLHGRMPAREKDEVMEAFRRGDYDLLVSTTVVEVGV 628

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+  A++II+ENAE FGLAQLHQLRGRVGRG      I +      + +  RL +L+ + 
Sbjct: 629 DIPKATLIIVENAERFGLAQLHQLRGRVGRGGLQGYAIFIAG-EAGQKTLKRLKILEEST 687

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           DGF IAE DLK R  GE+ G +QSG P+  +        ++E AR  AK I+ +DP L  
Sbjct: 688 DGFYIAEMDLKLRGPGELRGTRQSGYPELKLGDLAEDTGIIEKARALAKAIVDKDPTLDL 747

Query: 676 VRGQSIRILLYLYQYNEAFQFI 697
              ++++  L        F+ +
Sbjct: 748 PEHRALKEELRAQAERVGFREV 769


>gi|205373335|ref|ZP_03226139.1| ATP-dependent DNA helicase recG [Bacillus coahuilensis m4-4]
          Length = 591

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 225/589 (38%), Positives = 345/589 (58%), Gaps = 14/589 (2%)

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           +  +FF +     K+    G  + +TGK  K +  I + H    F  + +      E +Y
Sbjct: 1   MKAVFFNQ--PYAKSKLILGESVIITGKWDKNRQEITVNH----FSTNDNQEKKDYEPIY 54

Query: 161 SLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           SL   L    F+K +  AL      + + +  ++LQK    S  E F I+H P   +D  
Sbjct: 55  SLRGSLKNHTFRKFVALALKEYGDKVVDPLPPEILQKYRLLSKKETFQILHFPGSEEDM- 113

Query: 220 WTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
                R R  Y+E L  Q+ +  +RK Q     GI I  +     + + ++PF  T +Q+
Sbjct: 114 --KQGRRRYVYEEFLLFQLKMQSLRKFQRDHSTGISILYDEGKVNEFITSLPFPLTVAQK 171

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + +IL D     RM R+LQGDVGSGKT+VA I++ A++ AG Q  +M P  ILA+QH 
Sbjct: 172 RVVHEILTDCQSPARMNRLLQGDVGSGKTVVAAISLYASITAGFQGALMVPTEILAEQHA 231

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + K  ++T + V ++T ++    R+  L++++ G+  I++GTHAL QD + +++L LV
Sbjct: 232 ESLAKMFEHTDVTVALLTSSIKGKKRKVLLDQLSIGRIDILVGTHALIQDEVNFHQLGLV 291

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I DEQHRFGV QR  L +K   P+VL MTATPIPRTL +T  G++D+S I E PAGRKPI
Sbjct: 292 ITDEQHRFGVAQRKVLREKGENPNVLFMTATPIPRTLAITVFGEMDVSTIDELPAGRKPI 351

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-- 516
           +T       +D V+  LK  +S+G++AY I P IEE  + + ++ ++  + L  +F S  
Sbjct: 352 ETYWAKEEMLDRVLHFLKKEISKGRQAYVITPLIEESDKLDVQNAIDVHSQLSLYFGSNV 411

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            + ++HGR+   +KE VM  F   +  +L++TTV+EVG++V +A+++II +AE FGL+QL
Sbjct: 412 KVGLMHGRLHPTEKEQVMKEFSEHSVDILVSTTVVEVGVNVPNATMMIIYDAERFGLSQL 471

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRGEE S CILL +P  +     R++++  T DGF+++E+DL+ R  G+  G 
Sbjct: 472 HQLRGRVGRGEEQSYCILLANPK-TDVGKERMTIMTETTDGFVLSEKDLELRGPGDFFGR 530

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           KQSGMP+F +A       +LEIAR DAK ++         R +++R  L
Sbjct: 531 KQSGMPEFKMADMVHDYRVLEIARDDAKALIDSPIFWDHERYEALRERL 579


>gi|15604444|ref|NP_220962.1| ATP-dependent DNA helicase RECG (recG) [Rickettsia prowazekii str.
           Madrid E]
 gi|3861138|emb|CAA15038.1| ATP-DEPENDENT DNA HELICASE RECG (recG) [Rickettsia prowazekii]
          Length = 724

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 257/680 (37%), Positives = 381/680 (56%), Gaps = 30/680 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LFAP+  F  + +     L ++            DLLFY P S+ ++   P ++++    
Sbjct: 31  LFAPVKAFINIREDTVSALKRL------GIKNIRDLLFYLPVSYQNKILSPNLTKVRGGE 84

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+     I    + Q +  +P KI  ++ TG + L+FF++  + + N    G K  ++GK
Sbjct: 85  IIQTE-IIVNSINLQKRGNQPLKITASNNTGSLLLVFFHKPPQFILNKLKVGTKHIISGK 143

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++    ++ ++HP +I +         IE +YS+   LS       I++A+         
Sbjct: 144 VQFFDYQLQILHPEFITNPQ---LSKAIEPLYSMTYSLSNTQLYSYIIKAIEIFEEKCNG 200

Query: 189 IEKDLLQKKSFPSIA--EAFNIIHNPRKAKDFEWTS-----------PARERLAYDELLA 235
           IE   L++     +   +  ++  +P        T+            A+++LA  EL+A
Sbjct: 201 IEDKELKEYLDVILQNLKILHVFLSPHNLISCSRTTDIVVNPSYAIVAAKKQLAIKELIA 260

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            QI+LL +R Q  ++ G        I + ILR + F  T  Q+  I++I  + S K  M+
Sbjct: 261 NQISLLNVRMQINRKHGNIYPKAASIQENILRELGFELTYYQKQVIEEIEFEQSDKVEMM 320

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL+ M   V  G QA +MAP  +LA QHY+F  K  +NT I V ++
Sbjct: 321 RLLQGDVGSGKTLVALLTMVNVVTTGFQATLMAPTDLLANQHYDFFVKALKNTNIRVGLL 380

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG +    R+  + ++ +G+  I+IGTHALFQ+ + + KL  +++DEQHRFGVQQRL L 
Sbjct: 381 TGKILGKARKNIIIQLVNGKIDILIGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRLNLI 440

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K   P VL+MTATPIPR+L LT  GD+ +SK+  KP  R  I T  + +N+I  +I+ +
Sbjct: 441 NKGVNPDVLIMTATPIPRSLALTMFGDMTVSKLIGKPKNRLSIVTKTMSVNKIGYIIKAI 500

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSV------VERFNSLHEHFTSSIAIIHGRMSDID 529
              L  G++ YWICP I ++++   +        + RFNS+   +     IIHG+M +  
Sbjct: 501 NKRLIAGERVYWICPLITQREKETLQEDLLLMDVINRFNSIKNIYQGYTGIIHGKMKNDQ 560

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE +M  FK G  K+L+AT VIEVGIDV +A++I+IENAE FGLAQLHQLRGRVGRG   
Sbjct: 561 KERIMKQFKEGEIKILVATNVIEVGIDVSEATLIVIENAEQFGLAQLHQLRGRVGRGRLQ 620

Query: 590 SSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
           S CILLY+P  L K +  R  ++K+T DGF IAE+DLK R  GEILGIKQSG   F  A 
Sbjct: 621 SYCILLYNPKRLGKVAQNRFKIMKHTNDGFYIAEQDLKLRGSGEILGIKQSGEIDFFFAD 680

Query: 649 PELHDSLLEIARKDAKHILT 668
                +LL  A K A+  ++
Sbjct: 681 LAEDYALLIKAHKIAEREIS 700


>gi|289450213|ref|YP_003474687.1| ATP-dependent DNA helicase RecG [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184760|gb|ADC91185.1| ATP-dependent DNA helicase RecG [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 718

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 218/683 (31%), Positives = 357/683 (52%), Gaps = 38/683 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++   GV  K +  ++++      N     DLL Y P  + D      +++I  E+ VT
Sbjct: 22  SVTQLAGVSAKRAALMARL------NINTCRDLLNYWPRRYEDWATLSTLADIEPEQEVT 75

Query: 72  ITGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           +          Q + +    ++ L D + ++ +++F +    L+      +     G I 
Sbjct: 76  VLARCITMPHLQYKGKLSYLRVGLADASDQLGVIWFNQ--PYLETQLDIDKVYLFHGTIS 133

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPL------------IEAVYSLPTGLSVDLFKKIIVEA 178
           K +  + + +P +     +    PL            I  VY L  GL+  + + +I + 
Sbjct: 134 KNR-PLSLQNPAF-TPVPELAEAPLNTIKPSALANTFIRPVYPLTAGLTQGVLRNLIRQC 191

Query: 179 LSRL-PVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           L+ +   L   +++   + Q++   +   A   IH P   +D+   + ARERL ++EL  
Sbjct: 192 LTAMREQLEREDYLPLKMRQRQHLTTYVYAVEHIHFPTCLEDY---TIARERLVFEELFF 248

Query: 236 GQIALLLMRKQFKKEIGIPI----NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            Q+ L L++K+       PI           Q ++  +P+  TK+Q +A++DI  D++  
Sbjct: 249 MQLGLQLLKKRRLNGQTAPIINLDKTAETKYQAVVNALPYRLTKAQIAALQDISTDLAVG 308

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVGSGKT+VA +A+   V AG Q ++MAP GILA+QHY  I        I 
Sbjct: 309 IPMDRLVQGDVGSGKTIVAALALYRTVLAGYQGLLMAPTGILAEQHYNNISSLLTPYGIK 368

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V ++TG    A +R+  + ++ G+  ++IGT A+  D++Q     LV+ DEQHRFGV QR
Sbjct: 369 VALLTGKTKGAAKRQITQALSTGEIDLLIGTQAILNDNLQMLHPGLVVTDEQHRFGVNQR 428

Query: 412 LKL--TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           L +   Q    PHVL+M+ATPIPR+L L   GD+ IS I E P GR PIKT  +    ++
Sbjct: 429 LAMIKRQDEQRPHVLVMSATPIPRSLALVLYGDLSISIIDELPPGRLPIKTYTVGSADLE 488

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSD 527
                +  +L  G++AY ICP   +   S   +  E    L        +I ++HG M +
Sbjct: 489 RAYALIHKLLRLGQQAYVICPLKADTGHSESFAATELGEELKNKVFPEFTIGLLHGAMKE 548

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K++VM  FKNG   +L++TTV+EVG+D  +A+++++ NAE FGLAQLHQLRGRVGRG+
Sbjct: 549 NEKQTVMADFKNGKINILVSTTVVEVGVDNPNATVLLVMNAERFGLAQLHQLRGRVGRGK 608

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C LL+       +  RL  + ++ DG+ +AE DL+ R  G+  G++Q G+P+F +A
Sbjct: 609 LQSYC-LLHSDRQQGTARERLVQMCHSNDGYQLAEADLRLRGPGDFFGVRQHGLPEFKLA 667

Query: 648 QPELHDSLLEIARKDAKHILTQD 670
                  +L  A ++ + IL +D
Sbjct: 668 NLYEDAGILARAGREVQQILAED 690


>gi|182625855|ref|ZP_02953621.1| ATP-dependent DNA helicase RecG [Clostridium perfringens D str.
           JGS1721]
 gi|177908889|gb|EDT71381.1| ATP-dependent DNA helicase RecG [Clostridium perfringens D str.
           JGS1721]
          Length = 690

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 226/663 (34%), Positives = 367/663 (55%), Gaps = 20/663 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           ++  +   +GVG K    L+K+           +DLL Y P  +   +    ++  + + 
Sbjct: 16  IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFPRDYEFLNDDISLNGDTSDE 69

Query: 69  IVTITGYISQH-SSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              +   +  + SS + +  +    I       ++   +F +    +K  F  G +  + 
Sbjct: 70  KAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQ--PYIKRNFILGNEYNLM 127

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK KK+ N + +++P       ++ N   I  +Y+L  GL+  +  K+I E L  + ++ 
Sbjct: 128 GKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINEILKNM-IIK 183

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + +++++K    S+ +A   IH P    + +       RL + EL    + +++M+  
Sbjct: 184 ENLPEEIVKKYKLISLDKAIRSIHFPEGRGELQSAIN---RLKFQELFTYSLKIIMMKAH 240

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            KKE          + + +  ++P++ T +Q   +++IL D  +   M R++QGDVGSGK
Sbjct: 241 IKKENSGISFKMSPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNRLVQGDVGSGK 300

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVALI+M      G Q V+MAP  ILA QHY   KKY     + +E++TG+  +  +++
Sbjct: 301 TLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLDKFGVDIELLTGSTKEKEKKR 360

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E+IA G+  ++IGTHAL QD ++   L LV+ DEQHRFGV+QR +L  K     VL+M
Sbjct: 361 IKEKIASGKEIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLINKNKRADVLVM 420

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L    D+DIS I E P GRKPI T+++ +N+  +        + +G++ Y
Sbjct: 421 TATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFALKEVEKGRQFY 480

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            + P IEE ++ N  SV + +  L         I I+HG+M+  DK+ ++++FKNG  K 
Sbjct: 481 IVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMAGKDKDKIINTFKNGEIKG 540

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE  S CIL+ +       
Sbjct: 541 IISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCILIANTKNDIT- 599

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ ++  + DGF IAEEDLK R  GE+ G++Q G   F++A      ++L+ A  +AK
Sbjct: 600 RRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVDDINILKCANHEAK 659

Query: 665 HIL 667
            I+
Sbjct: 660 LIV 662


>gi|292572214|gb|ADE30129.1| ATP-dependent DNA helicase RecG [Rickettsia prowazekii Rp22]
          Length = 724

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 258/680 (37%), Positives = 381/680 (56%), Gaps = 30/680 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LFAP+  F  + +     L ++            DLLFY P S+ ++   P ++++    
Sbjct: 31  LFAPVKAFINIREDTVSALKRL------GIKNIRDLLFYLPVSYQNKILSPNLTKVRGGE 84

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+     I    + Q +  +P KI  ++ TG + L+FF++  + + N    G K  ++GK
Sbjct: 85  IIQTE-IIVNSINLQKRGNQPLKITASNNTGSLLLVFFHKPPQFILNKLKVGTKHIISGK 143

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++    ++ ++HP +I +         IE +YS+   LS       I++A+         
Sbjct: 144 VQFFDYQLQILHPEFITNPQ---LSKAIEPLYSMTYSLSNTQLYSYIIKAIEIFEEKCNG 200

Query: 189 IEKDLLQKKSFPSIA--EAFNIIHNPRKAKDFEWTS-----------PARERLAYDELLA 235
           IE   L++     +   +  ++  +P        T+            A+++LA  EL+A
Sbjct: 201 IEDKELKEYLDVILQNLKILHVFLSPHNLISCSRTTDIVVNPSYAIVAAKKQLAIKELIA 260

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            QI+LL +R Q  ++ G        I + ILR + F  T  Q+  I++I  + S K  M+
Sbjct: 261 NQISLLNVRMQINRKHGNIYPKAASIQENILRELGFELTYYQKQVIEEIEFEQSDKVEMM 320

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL+ M   V  G QA +MAP  +LA QHY+F  K  +NT I V ++
Sbjct: 321 RLLQGDVGSGKTLVALLTMVNVVTTGFQATLMAPTDLLANQHYDFFVKALKNTNIRVGLL 380

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG +    RR  + ++ +G+  I+IGTHALFQ+ + + KL  +++DEQHRFGVQQRL L 
Sbjct: 381 TGKILGKARRNIIIQLVNGKIDILIGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRLNLI 440

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K   P VL+MTATPIPR+L LT  GD+ +SK+  KP  R  I T  + +N+I  +I+ +
Sbjct: 441 NKGVNPDVLIMTATPIPRSLALTMFGDMTVSKLIGKPKNRLSIVTKTMSVNKIGYIIKAI 500

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSV------VERFNSLHEHFTSSIAIIHGRMSDID 529
              L  G++ YWICP I ++++   +        + RFNS+   +     IIHG+M +  
Sbjct: 501 NKRLIAGERVYWICPLITQREKETLQEDLLLMDVINRFNSIKNIYQGYTGIIHGKMKNDQ 560

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE +M  FK G  K+L+AT VIEVGIDV +A++I+IENAE FGLAQLHQLRGRVGRG   
Sbjct: 561 KERIMKQFKEGEIKILVATNVIEVGIDVSEATLIVIENAEQFGLAQLHQLRGRVGRGRLQ 620

Query: 590 SSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
           S CILLY+P  L K +  R  ++K+T DGF IAE+DLK R  GEILGIKQSG   F  A 
Sbjct: 621 SYCILLYNPKRLGKVAQNRFKIMKHTNDGFYIAEQDLKLRGSGEILGIKQSGEIDFFFAD 680

Query: 649 PELHDSLLEIARKDAKHILT 668
                +LL  A K A+  ++
Sbjct: 681 LAEDYALLIKAHKIAEREIS 700


>gi|223940295|ref|ZP_03632153.1| ATP-dependent DNA helicase RecG [bacterium Ellin514]
 gi|223891062|gb|EEF57565.1| ATP-dependent DNA helicase RecG [bacterium Ellin514]
          Length = 706

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 237/698 (33%), Positives = 359/698 (51%), Gaps = 53/698 (7%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL  PL   RGVG +    L+++            DLL + P  + DR Y   I+E+  +
Sbjct: 19  PLARPLKELRGVGTEREAQLARL------GLFTVGDLLLHRPRRYEDRRYFRNIAELQLD 72

Query: 68  RIVTITGYISQHSSFQLQK--RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
              T  G I      + +K  R  ++I+L+DGTG +   ++      ++N F +G ++ V
Sbjct: 73  EASTTRGTIVALGLKRFKKGMRSVFEIILDDGTGRLHCRWWN--LPFMQNYFAQGDEVFV 130

Query: 126 TGKIKKLKNRIIMVHPHYIF---HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL--- 179
            GK+  LK R  + HP            ++   I  +Y L  G+     +  I   L   
Sbjct: 131 FGKLNSLKPR-TIDHPETEVIYGGEESSIHINRIAPIYPLTEGMPQRWIRSFIHRTLGEF 189

Query: 180 --SRLPVLPEWIEKDL-------LQKKSF--------------PSIAEAFNIIHNPRKAK 216
               +   P+  E+         L+                  PS A A +++H P    
Sbjct: 190 EKEIVEPWPKLCEETQGVAASFRLRDYGLTSKERPEAQGYKELPSKANALHMVHFPEAIG 249

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG-IPINVEGKIAQKILRNIPFSPTK 275
           D E     R RLA DE +  Q  + L RK+F+ +    P   +    +  L  + F+ T+
Sbjct: 250 DIELA---RRRLALDEFIELQREIQLRRKRFELKAQSRPCAGDNHFIKPFLAKLGFTLTE 306

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
           +Q   ++++ +DM   + M R+LQGDVGSGKT+V+      A+E+G    +MAP  ILA+
Sbjct: 307 AQTKVLRELRKDMGGAHPMRRLLQGDVGSGKTVVSACCALMALESGYNVALMAPTEILAE 366

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA-------LERIAHGQAHIIIGTHALFQD 388
           QH +  +++ +   I V + TG+       K        +      Q  + IGTHAL +D
Sbjct: 367 QHLQNFRRWFEPLGIRVIMQTGSQKSVRADKTAGPMLPEVAESTSHQLTMAIGTHALIED 426

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
                 L LVI+DEQH+FGV QR KL +K   PH+L+MTATPIPRTL LT  G++D+S I
Sbjct: 427 GFALNHLGLVIIDEQHKFGVTQREKLLRKGNYPHLLVMTATPIPRTLGLTLYGELDVSTI 486

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            E P GR  IKT +   +++ +V   ++  L+EG++AY + P++EE   +  ++V + F 
Sbjct: 487 DELPTGRGRIKTFVRTADKLPKVWAFIREKLAEGRQAYVVYPRVEESGPTGLKAVTKEFE 546

Query: 509 SLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +L        I ++HGR+   +KE VM  F+     +L+AT +IEVG+DV +A+I++IEN
Sbjct: 547 NLKSLLAPYRIGLLHGRLKAAEKELVMTGFRKNQVNILLATPLIEVGVDVPNATIMVIEN 606

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           +E FGLAQLHQLRGR+GRG   S CIL+     +  +  RL VL+ T DGF IAE DLK 
Sbjct: 607 SEQFGLAQLHQLRGRIGRGAHDSFCILIAAVK-NAEARQRLQVLEETNDGFRIAEADLKI 665

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           R  GE+LG +QSG+P F         +L+ +AR  A  
Sbjct: 666 RGPGELLGQQQSGLPNFKFGNLAEDLALIRLARDLAPE 703


>gi|15892824|ref|NP_360538.1| ATP-dependent DNA helicase RecG [Rickettsia conorii str. Malish 7]
 gi|15620008|gb|AAL03439.1| ATP-dependent DNA helicase RecG [Rickettsia conorii str. Malish 7]
          Length = 713

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 257/688 (37%), Positives = 370/688 (53%), Gaps = 43/688 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+ + TF  + +     L ++            DLLFY P S+ ++   P ++E+ +  
Sbjct: 9   LFSSVKTFINIREDTVSALKRL------GIKNIRDLLFYLPVSYQNKILSPNLTEVRDGD 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+     + +  +   +  +P KI  ++ TG + L+FF++    + N    G    ++GK
Sbjct: 63  IIQTE-IVVESINLPKKSSQPLKITASNDTGSLLLVFFHKPPPFIFNKLQVGTSHIISGK 121

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++   + + + HP +I +         IE +YSL   LS       I++A+       + 
Sbjct: 122 VQFFDHYLQIAHPEFIVNPKLAKE---IEPIYSLTYLLSNKQLYSYIIKAIEIFEEKCKS 178

Query: 189 IEKD--------LLQKKSFPSIAEAFNIIHNPRKA------------------KDFEWTS 222
           IE          +LQ      +         P K                    + +  +
Sbjct: 179 IEDKEVKDYLDIILQNLQMLHVFHHCEEACMPTKQSSNVKLINSRLPQPLKGLHNDDLYT 238

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
            A+++LA  EL+A QI+LL +R Q  +  G        I   IL  + F  T  Q+  I+
Sbjct: 239 NAKKQLAAKELIANQISLLNVRTQISRRQGNIYPKAVSIQANILNELGFELTSYQKQVIE 298

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I  D S K  M+R+LQGDVGSGKTLVAL+ M   V  G QA +MAP  +LA QHYEF  
Sbjct: 299 EIECDQSDKIEMMRLLQGDVGSGKTLVALLTMVNVVATGFQATLMAPTDLLANQHYEFFV 358

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           K  +NT I V ++TG +    R+  + ++ + +  I++GTHALFQ+ + + KL  +++DE
Sbjct: 359 KALKNTNIRVGLLTGKILGTARKNIMIQLDNDEIDILVGTHALFQEKVSFKKLGYIVIDE 418

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           QHRFGVQQRL L  K   P VL+MTATPIPR+L LT  GD+ ISK+  KP  R PI T  
Sbjct: 419 QHRFGVQQRLNLINKGVNPDVLVMTATPIPRSLALTMFGDMTISKLMGKPKSRLPIATNT 478

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV------VERFNSLHEHFTS 516
           + +N+I+ +I  +   L  G++ YWICP IE+ ++            + RFNS+   +  
Sbjct: 479 MSVNKIEHIIVAINKKLIAGERVYWICPLIEQGEKETSEEDSLLMDVMNRFNSIDNIYQG 538

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
              IIHG+M +  K+ +M  FK G  K+L+ATTVIEVGID+ +A++IIIENAE FGLAQL
Sbjct: 539 YTGIIHGKMKNEQKDQIMKQFKEGEIKILVATTVIEVGIDIPEATLIIIENAEQFGLAQL 598

Query: 577 HQLRGRVGRGEEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           HQLRGRVGRG   S CILLY+P  L K +  R  ++K T DGF IAE+DLK R  GEILG
Sbjct: 599 HQLRGRVGRGSLQSYCILLYNPKRLRKVARGRFEIMKQTNDGFYIAEQDLKLRGSGEILG 658

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +KQSG   F  A       LL  A K A
Sbjct: 659 VKQSGEIAFFFANLADDYDLLLKAHKFA 686


>gi|15607024|ref|NP_214406.1| ATP-dependent DNA helicase RecG [Aquifex aeolicus VF5]
 gi|3914614|sp|O67837|RECG_AQUAE RecName: Full=ATP-dependent DNA helicase recG
 gi|2984279|gb|AAC07804.1| ATP-dependent DNA helicase RecG [Aquifex aeolicus VF5]
          Length = 792

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 255/714 (35%), Positives = 396/714 (55%), Gaps = 38/714 (5%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
           ++  F P+   +         L+K  I            D LFY P  + D+     I  
Sbjct: 90  IDVFFNPIEKVK--------ILTKTQISTLKALGIETVYDALFYFPEKYEDKRLNTSIKT 141

Query: 64  ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 V +     +    +  +R   +++  DGTG ITL + Y+        F +G +I
Sbjct: 142 AKVGEKVALKVK-VKEVKIKENERYTLEVVCTDGTGYITLKYRYKNPHFALKAFRKGMEI 200

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            V GK+K  K    MVHP     +S++     I  VY +        +S    +K +  A
Sbjct: 201 VVYGKLKSFKGEKYMVHPEVKSPSSEE--LGKIIPVYYVRKRGELQEISSKTKQKRVRTA 258

Query: 179 LSRLPV-----LPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFEWTSPARERLAY 230
           L+ L        PE++   L++K +FP IA     +HNP+         +T    +R+ Y
Sbjct: 259 LTALSESLYRYFPEYMPDYLIEKYNFPDIALCIKELHNPKDISVNALNSFTDLYHKRVIY 318

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           DEL   Q+ALLL +++ KKE    +NV+ K  +K +  +PF  T++QE AIK+IL+D+S+
Sbjct: 319 DELFLFQLALLLKKQEIKKEKAPKVNVDEKFLRKAIEKLPFKLTRAQERAIKEILEDLSR 378

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              M R+LQGDVGSGKT+VA++   A V++G Q  +M P  ILA QHY+   +  ++  +
Sbjct: 379 DVPMNRLLQGDVGSGKTIVAILTSLAVVKSGYQVAVMVPTEILAHQHYKKFSEMLKDYGV 438

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V ++TG++  + ++   + +  G  H+++GTHAL QD +++  L  VI+DEQHRFGV Q
Sbjct: 439 NVALLTGSLTPSQKKSVYKHVKEGNIHVLVGTHALIQDKVEFKNLGYVIIDEQHRFGVMQ 498

Query: 411 RLKLTQKAT--APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           R  L +K     PH L+M+ATPIPRTL L+  GD+DIS I E P GRK + T +   ++ 
Sbjct: 499 RKLLLEKGKGLYPHCLVMSATPIPRTLALSIYGDLDISIIDELPPGRKEVITKLYFESQK 558

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSD 527
           +EV ++++  L +G K Y I P IEE ++ N ++  E +    + F    + ++HG+M D
Sbjct: 559 EEVYKKVEEELKKGNKVYVIYPLIEESEKLNLKAATEEYERWKKLFPDRKVLLLHGKMPD 618

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K +VM+ FK     +L++TTVIEVGIDV +A++++IE+A  FGL+QLHQLRGRVGR +
Sbjct: 619 KEKLAVMEEFKR-EGDILVSTTVIEVGIDVPEATVMVIEDAHRFGLSQLHQLRGRVGRSD 677

Query: 588 EISSCILLYHPPL---SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
           + + C+L+    +      S  RL V   T DGF IAEEDLK R  GEI+G+ QSG   F
Sbjct: 678 KEAYCLLVVPDEIKNEKNESLKRLRVFVKTTDGFKIAEEDLKLRGPGEIIGVSQSGYFGF 737

Query: 645 LIAQPEL--HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
            +A        +LL +ARKDA+ +L  +P+L ++  Q ++ LL + +Y +  + 
Sbjct: 738 RVANLARSQDRALLGVARKDAEELLKNNPNLENL--QDLKKLL-IKKYGDKMEL 788


>gi|55981235|ref|YP_144532.1| ATP-dependent DNA helicase RecG [Thermus thermophilus HB8]
 gi|55772648|dbj|BAD71089.1| DNA helicase RecG [Thermus thermophilus HB8]
          Length = 770

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 217/682 (31%), Positives = 356/682 (52%), Gaps = 21/682 (3%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
            +    L+++            D+L ++P  + DR   P    + E +  T+   +    
Sbjct: 104 PQSRRKLAEL------GLRTVRDVLHHYPRRYEDRRALPGARYLEEGQKATLAVKVLAKE 157

Query: 81  SFQLQKRRP--YKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
             +  ++     ++   D  G  ITL++F +    + +   EG  + VTG++ + +N + 
Sbjct: 158 LVKTPRKGMQLVQVKAQDAWGWRITLVWFNQ--PWVLSQIEEGATLIVTGRVGR-RNGLQ 214

Query: 138 MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197
           +   H+    ++ ++   I  +Y    G+S    ++ +  AL     LP+ + +   +  
Sbjct: 215 LYVEHFEDEGTESLSTGRIVPIYPAKEGVSQAFLRRTVHRALELALPLPDPL-EAYREDL 273

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
                AEA   IH P   +D E    A  RL +DE L  ++  LL        +G    V
Sbjct: 274 GLMPYAEALKAIHFP---EDEEALKRALLRLKFDEYLLLELKALLE--AGGMVLGRSFRV 328

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           E    +   + +PF  T++QE  + +I +DM    +M R+LQGDVGSGKT+VA  A+  A
Sbjct: 329 EEAWVEAFKKALPFPLTRAQERVMGEIAKDMQSPRQMARLLQGDVGSGKTVVAAFALFLA 388

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
            + G Q  +MAP  ILA+QHY+ + +Y     I VE++ G+M    +  A+ R+  G+A 
Sbjct: 389 AKNGAQGALMAPTEILARQHYQNLTRYLFPLGIRVELLLGSMTAKEKEAAMARLLSGEAQ 448

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIPRTLV 436
           + +GTHAL Q+ + +  L L +VDE+HRFGV Q R  L      P VL+M+ATPIPR+L 
Sbjct: 449 VAVGTHALIQEGVGFRDLGLAVVDEEHRFGVLQRRALLKLAKAPPDVLVMSATPIPRSLA 508

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           LT  GD+++S + E P GR P+KT ++P     +     +  + +G + + + P IEE +
Sbjct: 509 LTLYGDLEVSVLDEMPPGRVPVKTKVLPHRLRLQAYAFAREEVRKGHQVFVVAPAIEESE 568

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           E + ++    +  L        +A++HGRM   +K+ VM++F+ G   LL++TTV+EVG+
Sbjct: 569 ELDLKAATTLYEELKGLLPGVRLALLHGRMPAREKDEVMEAFRRGDYDLLVSTTVVEVGV 628

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+  A++II+ENAE FGLAQLHQLRGRVGRG      + +      + +  RL +L+ + 
Sbjct: 629 DIPKATLIIVENAERFGLAQLHQLRGRVGRGGLEGYAVFIAG-EAGQKTLKRLKILEEST 687

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           DGF IAE DLK R  GE+ G +QSG P+  +        ++E AR  AK I+ +DP L  
Sbjct: 688 DGFYIAEMDLKLRGPGELRGTRQSGYPELKLGDLAEDTGIIEKARALAKAIVDKDPTLDL 747

Query: 676 VRGQSIRILLYLYQYNEAFQFI 697
              ++++  L        F+ +
Sbjct: 748 PEHRALKEELRAQAERVGFREV 769


>gi|302865853|ref|YP_003834490.1| ATP-dependent DNA helicase RecG [Micromonospora aurantiaca ATCC
           27029]
 gi|302568712|gb|ADL44914.1| ATP-dependent DNA helicase RecG [Micromonospora aurantiaca ATCC
           27029]
          Length = 733

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 216/737 (29%), Positives = 364/737 (49%), Gaps = 58/737 (7%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             PL     VG++ +  L+  ++   A      DL+++ P  + +R     I  +     
Sbjct: 9   DTPLKKL--VGERTAKALAGHLDLHTAG-----DLIYHFPRRYDERGEHTDIRSLDVGEQ 61

Query: 70  VTITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           VT+   + + +   +++RR    ++ + DG+G +    F+      +     GR     G
Sbjct: 62  VTVLAQVQRTAVRPMRQRRGNLLEVTVGDGSGGVLTCTFFGNQAWRERELRPGRWGLFAG 121

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNF-----------PLIEAVYSLPTGLSVDLFKKIIV 176
           K+ + + +  +  P Y+                      +  VY     +   +  + + 
Sbjct: 122 KVTEFRGKRQLNGPEYVLLGEGSEGEAAANEEVEEFAGALIPVYPAAAAVPTWVIARCVR 181

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
             L       + +   +   ++   I  A   IH P      E    AR RL +DE  A 
Sbjct: 182 VVLDTFTPPEDPLPATVRATRNLADIGTALREIHRPTSK---EALYRARRRLKWDEAFAV 238

Query: 237 QIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ L+  +++     G     + G +       +P+  T  Q+   ++I  D+++ + M 
Sbjct: 239 QLTLVQRKQRAAASPGRARPAKAGGLLDAFDARLPYELTSGQQVVGREIAADLARPHPMH 298

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI----- 350
           R+LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LA QH+  I              
Sbjct: 299 RLLQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHHRGILDLLGPLGRAGELG 358

Query: 351 ------IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                  VE++TG++  A RR+AL  +A G+A I++GTHAL  + + ++ L LV+VDEQH
Sbjct: 359 AADDATRVELVTGSLGAAARRRALAEVAEGRAGIVLGTHALLYEGVDFHDLGLVVVDEQH 418

Query: 405 RFGVQQRLKLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           RFGV+QR  L  KA  P HVL+MTATPIPRT+ +T  GD++ S +++ P GR PI + ++
Sbjct: 419 RFGVEQRDALRAKAEQPPHVLVMTATPIPRTVAMTVYGDLETSTLSQLPQGRSPIASHVV 478

Query: 464 PINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--- 516
           P       +D    RL+  +++G +AY +CP+I E   S+     E  N           
Sbjct: 479 PAAEKPAFLDRAWRRLREEVTKGHQAYVVCPRIGEGPVSDEEPPREDDNGRRPPLAVTEV 538

Query: 517 ------------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                        I ++HGR+   +K++VM ++ +G   +L+ATTV+EVG++V +A+++I
Sbjct: 539 APLLAEGPLHGLRIGVLHGRLPADEKDAVMRAYADGELDVLVATTVVEVGVNVPNATVMI 598

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           + +A+ FG++QLHQLRGRVGRG     C+L+       ++  RL  + +T DGF +AE D
Sbjct: 599 VLDADRFGVSQLHQLRGRVGRGSAAGLCLLVTEAAEGSSARERLDAVASTTDGFKLAELD 658

Query: 625 LKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+QR+EG++LG  QSG      +        L+  AR +A  ++  DPDL+  R  ++  
Sbjct: 659 LEQRREGDVLGATQSGRRSHLRLLSLLRDTELIRDARAEAIELVEDDPDLS--RHPALAA 716

Query: 684 LLYLYQYNEAFQFIRAG 700
            +      E  +++  G
Sbjct: 717 SVAALVDEERAEYLEKG 733


>gi|319941449|ref|ZP_08015777.1| ATP-dependent DNA helicase RecG [Sutterella wadsworthensis 3_1_45B]
 gi|319805069|gb|EFW01899.1| ATP-dependent DNA helicase RecG [Sutterella wadsworthensis 3_1_45B]
          Length = 716

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 223/656 (33%), Positives = 348/656 (53%), Gaps = 12/656 (1%)

Query: 31  INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY 90
           +           D + + P  + D      I  +       I G + + S+    +    
Sbjct: 46  VRLKRLGLVSDWDFVLHLPLRYEDETRIDPIGLLRAGETAQIQGEVVRSSTISTARGPQL 105

Query: 91  KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK-KLKNRIIMVHPHYIFHNSQ 149
              L D TG +TL F +      +++   G  +   G+ +      + ++HP      + 
Sbjct: 106 VAELADQTGRVTLRFIH-YYPTTRSLLTIGTTLRAFGEPRPAYSGGLELIHPKLKKPVAG 164

Query: 150 DVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
           +   P  +  VYSL  G+     +K I  AL  L  + + +  ++      P +  +   
Sbjct: 165 EDALPSSLTPVYSLGEGIQQTWLRKRINRALLDLMGMDDPLPAEVAAALQLPGLKASLEY 224

Query: 209 IHNPRKAKDFEW----TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI-NVEGKIAQ 263
           +H+P      E     T P  +RL +DELLA QI L  +R    +E    + +   K+  
Sbjct: 225 LHHPPADAPHEPLMNRTDPHWQRLKFDELLAQQITLKQLRAAVGQESAPALTDSAAKLTT 284

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
             L  +PF+ T++Q     ++  D+++   M R++QGDVG GKT++A +A   A+EAG Q
Sbjct: 285 AFLNALPFALTRAQTRVWDEVAHDLAEPRPMHRLVQGDVGCGKTVIAAMAALRAIEAGRQ 344

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA QH E I ++ +   + +  +TG +  + +  AL   A G+A ++IGTH
Sbjct: 345 AALMAPTEILADQHLEKIARWLEPLGVKIVRLTGRLKASEKTAALAAAASGEAQLVIGTH 404

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRL---KLTQKATAPHVLLMTATPIPRTLVLTSL 440
           AL Q+ + +  L L IVDEQHRFGV+QRL   +L      PH+L+++ATPIPRTL ++  
Sbjct: 405 ALIQEGVAFKALGLAIVDEQHRFGVEQRLALTRLMPDGRRPHLLMLSATPIPRTLAMSYF 464

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            DID+S I E P GR P+ T ++ ++R D V+  +   +S+G++ YW+CP IEE +  + 
Sbjct: 465 ADIDVSVIDELPPGRTPVATKLVRLDRRDAVLAVVNDTVSKGRQVYWVCPLIEESEMLDL 524

Query: 501 RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                    L        + ++HG MS  +KE+VM  F  G  +LL+ATTVIEVG+DV +
Sbjct: 525 TPASRCAEELAARLPHVRVGLLHGAMSAAEKEAVMSDFAAGRIELLVATTVIEVGVDVPN 584

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A+++IIE+AE FGLAQLHQLRGRVGRG   ++C+LL+   LS+    RL +++ + DGF 
Sbjct: 585 ATLMIIEHAERFGLAQLHQLRGRVGRGGGAAACVLLFDGNLSETGKERLKIIRESNDGFE 644

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           IA  DL+ R  GE LG +QSGMP    A  +    L+E A + A  +L Q P+  +
Sbjct: 645 IARRDLELRGPGEFLGEQQSGMPMLQFADLDSDAELVETASRTADLMLKQYPEQAA 700


>gi|311742949|ref|ZP_07716757.1| DNA helicase RecG [Aeromicrobium marinum DSM 15272]
 gi|311313629|gb|EFQ83538.1| DNA helicase RecG [Aeromicrobium marinum DSM 15272]
          Length = 705

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 209/676 (30%), Positives = 350/676 (51%), Gaps = 37/676 (5%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           +G   +  L +             DLL ++P  +++      + ++ E   VT+   +  
Sbjct: 15  IGDTSARALER-----AFGMRTVDDLLRHYPRRYLEVGALTPLGDLVEGMHVTVMARVKS 69

Query: 79  HSSFQLQ---KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
             +F+     +R   ++++ D TGE++L FF +     +     G+     G +   +NR
Sbjct: 70  AQNFRFGPGGRRTRSEVVVTDDTGELSLTFFNQAW---RGTMQPGQVGLFAGVVGSFRNR 126

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ 195
           + +  P Y     +      +  +Y     +S    ++ +   L  +  LPE + + +  
Sbjct: 127 LQLTQPDYDAVGDRLAR--GVVPIYPATAKVSSWAIERAVGTCLDVVVDLPETLPESVRT 184

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255
           +  F  +AEAF  +H P    D      A+ R  ++E    Q  L   R+   +      
Sbjct: 185 EHGFVPVAEAFEAVHRPH---DVAAAYRAQARFRFEEAFVIQTVLAQRRRAAAEASATAR 241

Query: 256 NVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
               G +  +    +PF+ T  Q      I  D++  + M R+LQG+VGSGKT+VAL AM
Sbjct: 242 PPRTGGLLDRFDARLPFALTAGQLEVAAQIEADLAAPHPMHRLLQGEVGSGKTVVALRAM 301

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAH 363
              V+AGGQAV++AP  +LA QH+  I                     V ++TG+M    
Sbjct: 302 LQVVDAGGQAVLLAPTEVLAAQHHRSISSMLGDLAASGLLGGAEGATRVRLLTGSMGAKA 361

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPH 422
           R+ +L     G+A I++GTHAL  D + +  L LV+VDEQHRFGV+QR  L  +A T PH
Sbjct: 362 RQASLLDAVSGEAGIVVGTHALLSDGVDFADLGLVVVDEQHRFGVEQRAALVDRAATRPH 421

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI----DEVIERLKVV 478
           VL+MTATPIPRT+ +T  GD++ S + E PAGR+PI+T ++P+       D V +R++  
Sbjct: 422 VLVMTATPIPRTVAMTVFGDLETSVLRELPAGRQPIQTTVVPVADRPAWLDRVWQRVREE 481

Query: 479 LSEGKKAYWICPQIEEKKESNF-RSVVERFNSLH--EHFTSSIAIIHGRMSDIDKESVMD 535
           +  G++ Y +  +I E + +   RS+ + F  L         +  +HGR+   +K++VM 
Sbjct: 482 VGRGRQGYVVVSRIGESEATTTTRSLTDLFAELEVGPLLGLRLGFLHGRLPADEKDAVMR 541

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +F  G   +L+ATTVIEVG+DV +A+++++ +A+ FG++QLHQLRGRVGRG+E   C+L+
Sbjct: 542 AFAAGDVDVLVATTVIEVGVDVPNATVMVVMDADRFGMSQLHQLRGRVGRGQEPGLCLLV 601

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDS 654
                + ++  RL  + +T DGF ++  D++ R EG++LG +QSG      +     H+S
Sbjct: 602 TTTDAASSAAERLVAVASTTDGFELSRLDVELRSEGDVLGTRQSGFRSSLRLLSVVRHES 661

Query: 655 LLEIARKDAKHILTQD 670
           ++  AR  A+ ++  D
Sbjct: 662 VITEARTAAEAVVAAD 677


>gi|329769811|ref|ZP_08261212.1| hypothetical protein HMPREF0433_00976 [Gemella sanguinis M325]
 gi|328838173|gb|EGF87791.1| hypothetical protein HMPREF0433_00976 [Gemella sanguinis M325]
          Length = 670

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 224/671 (33%), Positives = 360/671 (53%), Gaps = 27/671 (4%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            +N L   + T +GVG KY   L+++      +     D+L+  P            S +
Sbjct: 1   MINILEKSVGTIKGVGAKYLKTLNEL------DIYTVRDVLYNIPYRVS--SSTDFSSSV 52

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGT--GEITLLFFYRKTEMLKNVFFEGRK 122
            +   V  TG +    S Q    R  +   +  T  G + +++F +    LK    EGR+
Sbjct: 53  KDNEKVVTTGKVETRVSTQFYGNRRSRSFFSLATPSGSVKIVYFNQ--MYLKKNIIEGRE 110

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           I V G      N I      +     + ++   IE  Y L  G++   F K++ EA + L
Sbjct: 111 IVVKGTYNSANNTITASSISFNTDEKKQISGDKIEVFYHLKQGITQKRFAKLVDEAFNML 170

Query: 183 PVLPEWIEKDLLQK--KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
               E +  DL+ +  K    +    + +H P+ A++F+    AR+  A+ EL   Q+ L
Sbjct: 171 D--HENVILDLVPENFKGIWKLDRILHTLHFPKNAEEFD---KARKMFAFHELFDYQLKL 225

Query: 241 LLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            L     + ++    I++  +  ++   ++PFS T +Q   I +I+ D+ Q  +M R+LQ
Sbjct: 226 QLQNINSRVEDNRYAISISNQDIKEFKESLPFSLTSAQNRVIDEIVDDLEQPYKMDRLLQ 285

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT VA   +  A+++G Q  IMAP  ILA QH+E   ++ ++  I V ++T + 
Sbjct: 286 GDVGSGKTAVAAATLYGAIKSGYQTAIMAPTEILANQHFETFFEFFKDLNISVALLTSST 345

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
           P+  R   L  +  G+  +I+GTH+L Q+ +++  L  VI DEQHRFGV+QR  L+ K  
Sbjct: 346 PKKERNIILSLLESGEIELIVGTHSLIQEDVKFSSLKYVITDEQHRFGVKQRQILSNKGE 405

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A + L+MTATPIPR+L +T + DI +S I E PAGRK +KT         +V++ +++ L
Sbjct: 406 AVNSLMMTATPIPRSLAITLITDIKVSTIDELPAGRKKVKTYKANNKSFYKVLDNIRMEL 465

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSF 537
             G++ Y +CP IEE ++ + ++V E + ++ E+      I+++HG+MS+ +K+ +++ F
Sbjct: 466 DNGRQGYVVCPLIEESEKMDLQNVEETYENIREYLPDEYKISVLHGKMSNKEKDEIVEKF 525

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                 +LI+TTVIEVG++V +A+ +II +A  FGLA LHQLRGRVGR    S CIL+  
Sbjct: 526 LKKEIHILISTTVIEVGVNVANATFMIIVDAHRFGLATLHQLRGRVGRSNYQSYCILVTD 585

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
                    R+ ++    DGF IAE DLKQR  G+  G KQSG+P F +A       L+ 
Sbjct: 586 SK-----SERIDIMCLENDGFKIAEFDLKQRGPGDFFGTKQSGVPSFKVADLINDVDLMY 640

Query: 658 IARKDAKHILT 668
           +A+K A  I+ 
Sbjct: 641 LAKKLALKIIE 651


>gi|171058263|ref|YP_001790612.1| ATP-dependent DNA helicase RecG [Leptothrix cholodnii SP-6]
 gi|170775708|gb|ACB33847.1| ATP-dependent DNA helicase RecG [Leptothrix cholodnii SP-6]
          Length = 671

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 238/673 (35%), Positives = 359/673 (53%), Gaps = 20/673 (2%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL- 94
               R IDL  + P  + D      ++   E  ++ + G + + +  +L+ RR + + L 
Sbjct: 4   LGLERDIDLALHLPLRYEDETRLTPLAAAREGDLLHVEG-VVREARIELRPRRQFIVKLV 62

Query: 95  ---NDGTGEITLL-FFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150
               D  G I L+  F       +  F  G ++ V G+++       +VHP +       
Sbjct: 63  EALGDAPGRIELILRFVNFYPSHQKTFAPGTRLRVRGELRGGFFGREIVHPVFKTVEPGA 122

Query: 151 VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH 210
                +  VY     L     +K +   LSR   L E +  DLL     P + E+  ++H
Sbjct: 123 PLARELTPVYPTSAQLPQAYLRKAVAAGLSR-ARLDEILPPDLLPA-GLPPLRESLYLLH 180

Query: 211 NPRKAKDF----EWTSPARERLAYDELLAGQIALLLM-RKQFKKEIGIPINVEGKIAQKI 265
           +P          E   PA +R+ ++ELLA Q++ L   R++ K    +     G + +K+
Sbjct: 181 HPPADISLHAIQEREHPAWQRIKFEELLAQQLSQLQAQRERAKLRAPMLRGSAGGLHEKL 240

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           L  +PF  T +Q    ++I  D+ +   M R+LQGDVGSGKT+VA +A A A++AG Q  
Sbjct: 241 LAALPFQLTGAQRRVAEEIATDLGRPQPMNRLLQGDVGSGKTVVAALAAAVAMDAGWQCA 300

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP  ILA+QH+  +  +     I V  +TG+     R   LE++A G A +++GTHA+
Sbjct: 301 LMAPTEILAEQHFRKLIHWLAPLGIEVAWLTGSRKGKGRAAMLEKVASGAAQLVVGTHAV 360

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLG 441
            QD + + +L L ++DEQHRFGV QRL L +K       PH+L+M+ATPIPRTL +T   
Sbjct: 361 IQDDVHFARLGLAVIDEQHRFGVAQRLDLRRKLALQSLEPHLLMMSATPIPRTLAMTYFA 420

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           D+D+S I E P GR PI T +   +R ++VI R++  +++G + YW+ P IEE +  + +
Sbjct: 421 DLDVSTIDELPPGRTPIVTRVFAADRREQVIARVRDEVAKGSQVYWVVPLIEESEALDLQ 480

Query: 502 SVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           +  E    L        + ++HGRM   +K SVM  F  G   +L+ATTVIEVG+DV +A
Sbjct: 481 NATETHQQLGAVLPGTQVGLLHGRMPPAEKASVMALFSGGQMSVLVATTVIEVGVDVPNA 540

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           S+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS+    RL  +  T DGF I
Sbjct: 541 SVMVIEHAERFGLAQLHQLRGRVGRGSVASVCVLLYTGPLSQTGRDRLKAMAETTDGFEI 600

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
           A  DL+ R  GE +G +QSG      A       LL+ AR+ A  +L + P   + + Q 
Sbjct: 601 ARRDLEIRGPGEFMGARQSGDALLRFADLAQDGELLQCAREIAPRLLDRHP--AAAQAQI 658

Query: 681 IRILLYLYQYNEA 693
            R L    +Y +A
Sbjct: 659 RRWLGGKLEYLKA 671


>gi|94985241|ref|YP_604605.1| ATP-dependent DNA helicase RecG [Deinococcus geothermalis DSM
           11300]
 gi|94555522|gb|ABF45436.1| ATP-dependent DNA helicase RecG [Deinococcus geothermalis DSM
           11300]
          Length = 776

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 219/696 (31%), Positives = 359/696 (51%), Gaps = 24/696 (3%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL  P++     G   +  L  +            D+L  +P    DR   P ++ + E 
Sbjct: 98  PLDTPVTRLD-TGPGGARKLQSL------GLHTLRDVLHAYPHRHEDRRALPDLAAVEEG 150

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGT---GEITLLFFYRKTEMLKNVFFEGRKIT 124
           + VT+ G +   +  + +      +     T   G +   +F +    ++    EG ++ 
Sbjct: 151 QKVTVEGRVVTKARRKPKPN-LLIVEATLETPAGGRVRASWFNQ--PWVERQLREGARLV 207

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           +TG++K+    + +   H        + ++   I  VY    G+S +  +++   AL   
Sbjct: 208 LTGRVKRFGRTVQLGVEHLETLEDARESLSTGRIVGVYDSKEGISQEFLRRVAFRALQAA 267

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
           P L +++     +++    +A+A   IH P           A  RL +DE L  ++ +LL
Sbjct: 268 P-LDDYLPAHWRRERGLTDLADALWGIHFPAGEA---QLKRALHRLRFDEYLFLELRMLL 323

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
              +    +G      G+  ++    +PF  T +Q   + +I+ DM  + +M R++QGDV
Sbjct: 324 Q-GEDAVLLGKRFQATGEDIERFEAALPFRLTGAQRRVLLEIVADMRSERQMARLVQGDV 382

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT VA  A+  AV  G Q  +MAP  ILA+QHY  +  Y     + V ++ G M   
Sbjct: 383 GSGKTAVAAAALYLAVRDGYQGALMAPTEILARQHYANLLGYLAKLDVRVGLLIGAMTPK 442

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            + +   RIA G   +++GT AL Q+++++  L L +VDE+HRFGV QR +L      P 
Sbjct: 443 AKLEMQTRIAEGDVDVVVGTQALIQENVRFNNLGLAVVDEEHRFGVMQRRRLLTGR--PD 500

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+M+ATPIPR+L LT+ GD+++S I E P GR P++T +I      +    +   + EG
Sbjct: 501 VLVMSATPIPRSLALTAYGDLELSVIDELPPGRTPVETKLIQDTHRQQAYGFVMRQIREG 560

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGT 541
           ++AY +   IE+ +     +  +  + L      + I ++HGRM+  +K+ VM+ F+   
Sbjct: 561 RQAYVVTALIEQNENLELLAATQLADDLRVLLPEARIELLHGRMTAAEKDLVMERFRARE 620

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVG+DV +A++++IENAE FGL+QLHQLRGRVGRG   S CIL+     S
Sbjct: 621 FDVLVSTTVIEVGVDVPNATVMVIENAERFGLSQLHQLRGRVGRGSAQSYCILIAG-EHS 679

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
             +  RL +++ + DGF+IAE DLK R  GE+ G +QSG+P   +        ++E AR 
Sbjct: 680 NKTRQRLKIIEGSTDGFVIAEADLKLRGPGELRGTRQSGIPDLRLGDLASDIEIIEQARA 739

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
            AKHIL  DP L   R + +R  L     + AF+ +
Sbjct: 740 LAKHILAHDPKLEHPRLRGLRQELQSRSQSVAFREV 775


>gi|168217017|ref|ZP_02642642.1| ATP-dependent DNA helicase RecG [Clostridium perfringens NCTC 8239]
 gi|182380876|gb|EDT78355.1| ATP-dependent DNA helicase RecG [Clostridium perfringens NCTC 8239]
          Length = 690

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 226/663 (34%), Positives = 366/663 (55%), Gaps = 20/663 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           ++  +   +GVG K    L+K+           +DLL Y P  +   +    ++  + + 
Sbjct: 16  IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFPRDYEFLNDDISLNGDTSDE 69

Query: 69  IVTITGYISQH-SSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              +   +  + SS + +  +    I       ++   +F +    +K  F  G +  + 
Sbjct: 70  KAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQ--PYIKRNFILGNEYNLM 127

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK KK+ N + +++P       ++ N   I  +Y+L  GL+  +  K+I E L  + ++ 
Sbjct: 128 GKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINEILKNM-IIK 183

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +  ++++K    S+ +A   IH P    + +       RL + EL    + +++M+  
Sbjct: 184 ENLPDEIVKKYKLISLDKAIRSIHFPAGRGELQSAIN---RLKFQELFTYSLKIIMMKAH 240

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            KKE          + + +  ++P++ T +Q   +++IL D  +   M R++QGDVGSGK
Sbjct: 241 IKKENSGISFKMSPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNRLVQGDVGSGK 300

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVALI+M      G Q V+MAP  ILA QHY   KKY     + +E++TG+  +  +++
Sbjct: 301 TLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLDKFGVDIELLTGSTKEKEKKR 360

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E+IA G+  ++IGTHAL QD ++   L LV+ DEQHRFGV+QR +L  K     VL+M
Sbjct: 361 IKEKIASGKEIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLINKNKRADVLVM 420

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L    D+DIS I E P GRKPI T+++ +N+  +        + +G++ Y
Sbjct: 421 TATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFALKEVEKGRQFY 480

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            + P IEE ++ N  SV + +  L         I I+HG+M+  DK+ ++++FKNG  K 
Sbjct: 481 IVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMAGKDKDKIINTFKNGEIKG 540

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE  S CIL+ +       
Sbjct: 541 IISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCILIANTKNDIT- 599

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ ++  + DGF IAEEDLK R  GE+ G++Q G   F++A      ++L+ A  +AK
Sbjct: 600 RRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVDDINILKCANHEAK 659

Query: 665 HIL 667
            I+
Sbjct: 660 LIV 662


>gi|168210637|ref|ZP_02636262.1| ATP-dependent DNA helicase RecG [Clostridium perfringens B str.
           ATCC 3626]
 gi|170711318|gb|EDT23500.1| ATP-dependent DNA helicase RecG [Clostridium perfringens B str.
           ATCC 3626]
          Length = 690

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 229/667 (34%), Positives = 365/667 (54%), Gaps = 28/667 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFI----DRHYRPKISEI 64
           ++  +   +GVG K    L+K+           +DLL Y P  +     D      IS+ 
Sbjct: 16  IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFPRDYEFLNDDISLNGDISD- 68

Query: 65  SEERIVTITGYISQH-SSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
                  +   +  + SS + +  +    I       ++   +F +    +K  F  G +
Sbjct: 69  ---EKAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQ--PYIKRNFILGNE 123

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             + GK KK+ N + +++P       ++ N   I  +Y+L  GL+  +  K+I E L  +
Sbjct: 124 YNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINEILKNM 180

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            ++ E +  ++++K    S+ +A   IH P    + +       RL + EL    + +++
Sbjct: 181 -IIKENLPDEIVKKYKLISLDKAIRSIHFPAGRGELQSAIN---RLKFQELFTYSLKIIM 236

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M+   KKE          + + +  ++P++ T +Q   +++IL D  +   M R++QGDV
Sbjct: 237 MKAHIKKENSGISFKMSPLLKDLKDSLPYTLTNAQSRTLREILMDQKRNIAMNRLVQGDV 296

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVALI+M      G Q V+MAP  ILA QHY   KKY     + +E++TG+  + 
Sbjct: 297 GSGKTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLDKFGVDIELLTGSTKEK 356

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +++  E+IA G+  ++IGTHAL QD ++   L LV+ DEQHRFGV+QR +L  K     
Sbjct: 357 EKKRIKEKIASGKEIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLINKNKRAD 416

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL L    D+DIS I E P GRKPI T+++ +N+  +        + +G
Sbjct: 417 VLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFALKEVEKG 476

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNG 540
           ++ Y + P IEE ++ N  SV + +  L         I I+HG+M+  DK+ ++++FKNG
Sbjct: 477 RQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMAGKDKDKIINTFKNG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE  S CIL+ +   
Sbjct: 537 EIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCILIANTKN 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
                 R+ ++  + DGF IAEEDLK R  GE+ G++Q G   F++A      ++L+ A 
Sbjct: 597 DIT-RRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVDDINILKCAN 655

Query: 661 KDAKHIL 667
            +AK I+
Sbjct: 656 HEAKLIV 662


>gi|187933724|ref|YP_001885426.1| ATP-dependent DNA helicase RecG [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721877|gb|ACD23098.1| ATP-dependent DNA helicase RecG [Clostridium botulinum B str.
           Eklund 17B]
          Length = 677

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/663 (35%), Positives = 355/663 (53%), Gaps = 20/663 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +++ +S+ +GVG K +  L+K            +DLL Y P  +   +      EI+ E 
Sbjct: 3   IYSDISSLKGVGPKLTERLNK------CGIFNLLDLLLYFPRDYEFVNCNILFEEINGEE 56

Query: 69  IVTITGYISQHS-SFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              +   + +     + +  +    I       ++   +F ++   +KN F+  +   + 
Sbjct: 57  KQILRCKVIRIKGDIKTKTGKILTTIEFEYNGHKVYGKWFNQR--YIKNTFYINKVYNLM 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK K++   + + +P  +   + D +   I   Y L   +S  + +K+I   +  + ++ 
Sbjct: 115 GKFKRIGKTLEVTNPTIVCEEALDNS---ILPKYPLKGDISNKVIEKLINLVIDSI-IIK 170

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +  D+L K +  S+ +A   IH P      E       RL + EL    + LLL++ +
Sbjct: 171 ENLPLDMLNKYNLISLNDAIRSIHFPENKDLLEKAII---RLKFQELFTYSLKLLLVKHK 227

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
             K             + +  NIP+S T +Q   +++IL+D   +  M R++QGDVGSGK
Sbjct: 228 LNKNKNGICFEWDNQLKVLKDNIPYSLTNAQTKVVREILRDQKSQKPMNRLVQGDVGSGK 287

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VALI++   ++ G Q   MAP  ILA QHYE  KK  Q+  I +EI+TG+ P   +R+
Sbjct: 288 TIVALISIFNVIKNGYQCAFMAPTEILANQHYEESKKLFQDFNIDIEILTGSTPLKEKRR 347

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E+I    A +IIGTH LFQD + + KL L+I DEQHRFGV+QR KL  K      L+M
Sbjct: 348 IKEKIKQENAMLIIGTHTLFQDDVIFNKLGLIITDEQHRFGVEQRSKLINKGKKADCLVM 407

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L    D+D+S I E P GRK I T     N  D   E     +++G++ Y
Sbjct: 408 TATPIPRTLALYLYSDLDVSIIDELPPGRKRIDTRFYQENNRDIGYELALEEINKGRQVY 467

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP I+E ++    SV   +  L       I   I+HG+M  I+K+  +  FKN   K+
Sbjct: 468 IVCPLIDEDEKEELNSVETLYTKLKNGIFKDIGVEILHGKMKAIEKQDRISRFKNNEFKV 527

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LI+TTVIEVG++V +AS++IIENAE FGLAQLHQLRGRVGRG+  S CIL+     S  +
Sbjct: 528 LISTTVIEVGVNVPNASVMIIENAERFGLAQLHQLRGRVGRGKYASYCILIAKAK-SNVT 586

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ ++  + DGF I+EEDLK R  GE+ G KQSG   F++A      S+L  A+ +A 
Sbjct: 587 KKRMMIMTESNDGFFISEEDLKLRGSGEMFGRKQSGDSNFILADLYEDISILRAAKHEAI 646

Query: 665 HIL 667
            IL
Sbjct: 647 DIL 649


>gi|168207257|ref|ZP_02633262.1| ATP-dependent DNA helicase RecG [Clostridium perfringens E str.
           JGS1987]
 gi|170661340|gb|EDT14023.1| ATP-dependent DNA helicase RecG [Clostridium perfringens E str.
           JGS1987]
          Length = 690

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 228/667 (34%), Positives = 365/667 (54%), Gaps = 28/667 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFI----DRHYRPKISEI 64
           ++  +   +GVG K    L+K+           +DLL Y P  +     D      IS+ 
Sbjct: 16  IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFPRDYEFLNDDISLNGDISD- 68

Query: 65  SEERIVTITGYISQH-SSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
                  +   +  + SS + +  +    I       ++   +F +    +K  F  G +
Sbjct: 69  ---EKAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQ--PYIKRNFILGNE 123

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             + GK KK+ N + +++P       ++ N   I  +Y+L  GL+  +  K+I E L  +
Sbjct: 124 YNLMGKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINEILKNM 180

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
            ++ E +  ++++K    S+ +A   IH P    + +       RL + EL    + +++
Sbjct: 181 -IIKENLPDEIVKKYKLISLDKAIRSIHFPEGRGELQSAIN---RLKFQELFTYSLKIIM 236

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           M+   KKE          + + +  ++P++ T +Q   +++IL D  +   M R++QGDV
Sbjct: 237 MKAHIKKENSGISFKMSPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNRLVQGDV 296

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKTLVALI+M      G Q V+MAP  ILA QHY   KKY     + +E++TG+  + 
Sbjct: 297 GSGKTLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLDQFGVDIELLTGSTKEK 356

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +++  E+IA G+  ++IGTHA+ QD ++   L LV+ DEQHRFGV+QR +L  K     
Sbjct: 357 EKKRIKEKIASGKEIMLIGTHAVIQDDVELNNLGLVVTDEQHRFGVEQRSRLINKNKRAD 416

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL L    D+DIS I E P GRKPI T+++ +N+  +        + +G
Sbjct: 417 VLVMTATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFALKEVEKG 476

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNG 540
           ++ Y + P IEE ++ N  SV + +  L         I I+HG+M+  DK+ ++++FKNG
Sbjct: 477 RQFYIVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMAGKDKDKIINTFKNG 536

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE  S CIL+ +   
Sbjct: 537 EIKGIISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCILIANTKN 596

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
                 R+ ++  + DGF IAEEDLK R  GE+ G++Q G   F++A      ++L+ A 
Sbjct: 597 DIT-RRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVDDINILKCAN 655

Query: 661 KDAKHIL 667
            +AK I+
Sbjct: 656 HEAKLIV 662


>gi|315502398|ref|YP_004081285.1| ATP-dependent DNA helicase recg [Micromonospora sp. L5]
 gi|315409017|gb|ADU07134.1| ATP-dependent DNA helicase RecG [Micromonospora sp. L5]
          Length = 733

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 216/737 (29%), Positives = 366/737 (49%), Gaps = 58/737 (7%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             PL     VG++ +  L+  ++   A      DL+++ P  + +R     I  +     
Sbjct: 9   DTPLKKL--VGERTAKALAGHLDLHTAG-----DLIYHFPRRYDERGEHTDIRSLDVGEQ 61

Query: 70  VTITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           VT+   + + +   +++RR    ++ + DG+G +    F+      +     GR     G
Sbjct: 62  VTVLAQVQRTAVRPMRQRRGNLLEVTVGDGSGGVLTCTFFGNQAWRERELRPGRWGLFAG 121

Query: 128 KIKKLKNRIIMVHPHYIF-----------HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
           K+ + + +  +  P Y+            +   +     +  VY     +   +  + + 
Sbjct: 122 KVTEFRGKRQLNGPEYVLLGEGGEGEAAANEEVEEFAGALIPVYPAAAAVPTWVIARCVR 181

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
             L       + +   +   ++   I  A   IH P      E    AR RL +DE  A 
Sbjct: 182 VVLDTFTPPEDPLPATVRATRNLADIGTALREIHRPTSK---EALYRARRRLKWDEAFAV 238

Query: 237 QIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ L+  +++     G     + G +       +P+  T  Q+   ++I  D+++ + M 
Sbjct: 239 QLTLVQRKQRAAASPGRARPAKAGGLLDAFDARLPYELTSGQQVVGREIAADLARPHPMH 298

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI----- 350
           R+LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LA QH+  I              
Sbjct: 299 RLLQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHHRGILDLLGPLGRAGELG 358

Query: 351 ------IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                  VE++TG++  A RR+AL  +A G+A I++GTHAL  + + ++ L LV+VDEQH
Sbjct: 359 AADDATRVELVTGSLGAAARRRALAEVAEGRAGIVLGTHALLYEGVDFHDLGLVVVDEQH 418

Query: 405 RFGVQQRLKLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           RFGV+QR  L  KA  P HVL+MTATPIPRT+ +T  GD++ S +++ P GR PI + ++
Sbjct: 419 RFGVEQRDALRAKAEQPPHVLVMTATPIPRTVAMTVYGDLETSTLSQLPQGRSPIASHVV 478

Query: 464 PINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--- 516
           P       +D    RL+  +++G +AY +CP+I E   S+     E  N           
Sbjct: 479 PAAEKPAFLDRAWRRLREEVTKGHQAYVVCPRIGEGPVSDEEPPREDDNGRRPPLAVTEV 538

Query: 517 ------------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                        I ++HGR+   +K++VM ++ +G   +L+ATTV+EVG++V +A+++I
Sbjct: 539 APLLAEGPLHGLRIGVLHGRLPADEKDAVMRAYADGELDVLVATTVVEVGVNVPNATVMI 598

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           + +A+ FG++QLHQLRGRVGRG     C+L+       ++  RL  + +T DGF +AE D
Sbjct: 599 VLDADRFGVSQLHQLRGRVGRGSAAGLCLLVTEAAEGSSARERLDAVASTTDGFKLAELD 658

Query: 625 LKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+QR+EG++LG  QSG      +        L+  AR +A  ++  DPDL+  R  ++  
Sbjct: 659 LEQRREGDVLGATQSGRRSHLRLLSLLRDTELIRDARAEAIELVEDDPDLS--RHPALAA 716

Query: 684 LLYLYQYNEAFQFIRAG 700
            +      E  +++  G
Sbjct: 717 SVAALVDEERAEYLEKG 733


>gi|118602897|ref|YP_904112.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567836|gb|ABL02641.1| ATP-dependent DNA helicase RecG [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 686

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 239/681 (35%), Positives = 363/681 (53%), Gaps = 29/681 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           ++ LF+P+    G+G K    L+ I             LLF+ P+ + D+    K+++  
Sbjct: 1   MHQLFSPIIVLNGLGPKIQQKLNAI------GIFNLEHLLFHLPTRYQDKTKLTKLNQAQ 54

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLND-GTGEITLLFFYRKTEMLKNVFFEGRKIT 124
               V I   I         +R+     L+D G  ++ L FF+      K  F  G  I 
Sbjct: 55  VGDEVLIQLTIEHIEQVSTHQRQLL-CYLSDSGHQDLLLRFFHFNQ---KQNFIRGDIIQ 110

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             G+IK  KN + M HP Y   +    +     +  +Y+L   +     KK I  AL  L
Sbjct: 111 CFGEIKIGKNSLEMHHPEYRLISKGQAHLLEKTLSPIYALTANIHQAQMKKWIDIALETL 170

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW----TSPARERLAYDELLAGQI 238
                +     L   S P++ +A   +H+P+   + E       P+++RL  +EL A ++
Sbjct: 171 QQSNLYDNFKNLANNSMPTLKQALKTLHHPKVNDNIEQITNFNHPSQQRLIIEELCAQRL 230

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
            LL ++ + K +      ++  + +K+L  + F  TK+Q+ +I +I  D++    MLR+L
Sbjct: 231 NLLQLKDKRKSKKSNIFKIKDVLTKKVLNVLGFQLTKAQQRSIDEINSDLASNFPMLRLL 290

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA+ A   A+E G Q  IMAP   LA QH +    Y     I +  +TG+
Sbjct: 291 QGDVGSGKTIVAVFACLQAIENGFQVTIMAPNEALASQHLQEFSNYLDPLGIDIAFLTGS 350

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
                R + L++I   +  IIIGTH   Q  + + KL LVI+DEQH+FGV QRL L QKA
Sbjct: 351 QSATQRVERLKKIIIDEVKIIIGTHVFLQTQVVFNKLGLVIIDEQHKFGVHQRLSLVQKA 410

Query: 419 TA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIP +L++++  D+D S I E P GRKP KT+ +  ++ D+VIE++K 
Sbjct: 411 HNTPHQLVMTATPIPTSLIMSAYADLDCSVIDELPPGRKPTKTIALSNDKKDKVIEKIKQ 470

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
           V + G + YW+C  IEE +    +S     + L E+    ++ +IHG+M   +K ++MD 
Sbjct: 471 VCTTGNQVYWVCTLIEESETLRAKSATSTHHYLQENLKELTVVLIHGKMHKDEKSTIMDQ 530

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F      +L+ATTVIE+G++V ++ +I+IEN+E  GL+QLHQLR R GR    S CIL+Y
Sbjct: 531 FLKNKIDVLVATTVIEIGVNVTNSPLIVIENSERLGLSQLHQLRSRAGRDTNTSVCILMY 590

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLS +S+ RL  L+ T DGF IA++DL+ R  GEILG +Q+G+    IA       LL
Sbjct: 591 QAPLSHSSFVRLDTLRQTNDGFKIAQKDLELRGPGEILGTQQAGIANMKIANIVRDRYLL 650

Query: 657 EIA----------RKDAKHIL 667
           +            RKD +  L
Sbjct: 651 KQVYFYSEKFLKLRKDKQQAL 671


>gi|110799799|ref|YP_696417.1| ATP-dependent DNA helicase RecG [Clostridium perfringens ATCC
           13124]
 gi|110674446|gb|ABG83433.1| ATP-dependent DNA helicase RecG [Clostridium perfringens ATCC
           13124]
          Length = 690

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 226/663 (34%), Positives = 366/663 (55%), Gaps = 20/663 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           ++  +   +GVG K    L+K+           +DLL Y P  +   +    ++  + + 
Sbjct: 16  IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFPRDYEFLNDDISLNGDTSDE 69

Query: 69  IVTITGYISQH-SSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              +   +  + SS + +  +    I       ++   +F +    +K  F  G +  + 
Sbjct: 70  KAILKCKVQSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQ--PYIKRNFILGNEYNLM 127

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK KK+ N + +++P       ++ N   I  +Y+L  GL+  +  K+I E L  + ++ 
Sbjct: 128 GKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINEILKNM-IIK 183

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +  ++++K    S+ +A   IH P    + +       RL + EL    + +++M+  
Sbjct: 184 ENLPDEIVKKYKLISLDKAIRSIHFPAGRGELQSAIN---RLKFQELFTYSLKIIMMKAH 240

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            KKE          + + +  ++P++ T +Q   +++IL D  +   M R++QGDVGSGK
Sbjct: 241 IKKENSGISFKMSPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNRLVQGDVGSGK 300

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVALI+M      G Q V+MAP  ILA QHY   KKY     + +E++TG+  +  +++
Sbjct: 301 TLVALISMFNVYINGYQTVLMAPTEILANQHYAEAKKYLDKFGVDIELLTGSTKEKEKKR 360

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E+IA G+  ++IGTHAL QD ++   L LV+ DEQHRFGV+QR +L  K     VL+M
Sbjct: 361 IKEKIASGKEIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLINKNKRADVLVM 420

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L    D+DIS I E P GRKPI T+++ +N+  +        + +G++ Y
Sbjct: 421 TATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFALKEVEKGRQFY 480

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            + P IEE ++ N  SV + +  L         I I+HG+M+  DK+ ++++FKNG  K 
Sbjct: 481 IVSPLIEENEKLNLNSVEKIYEELKNGIFKDIRIEILHGKMAGKDKDKIINTFKNGEIKG 540

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE  S CIL+ +       
Sbjct: 541 IISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCILIANTKNDIT- 599

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ ++  + DGF IAEEDLK R  GE+ G++Q G   F++A      ++L+ A  +AK
Sbjct: 600 RRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVDDINILKCANHEAK 659

Query: 665 HIL 667
            I+
Sbjct: 660 LIV 662


>gi|260890455|ref|ZP_05901718.1| ATP-dependent DNA helicase RecG [Leptotrichia hofstadii F0254]
 gi|260859697|gb|EEX74197.1| ATP-dependent DNA helicase RecG [Leptotrichia hofstadii F0254]
          Length = 689

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 231/688 (33%), Positives = 364/688 (52%), Gaps = 25/688 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +GV K       K+            DLL++ P ++ +R    KI+EI  +  V + G 
Sbjct: 16  IKGVTKTNIPKFRKL------GVFTLYDLLYFFPRAYENRSNHKKIAEILADEFVILQGT 69

Query: 76  ISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
           +    +  ++  R  ++ +L+D +G I L++F  +   +KN    G +I V GK++K   
Sbjct: 70  VVNVVNQYIKAGRTMFRAVLSDDSGMIELVWFNNR--FVKNGIHIGDEIAVYGKVRKT-V 126

Query: 135 RIIMVHPHYIFHNS---QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIE 190
           +  +V+P Y   +           I  +Y     L     +K++  AL     +L E + 
Sbjct: 127 KFQLVNPEYKKISQASFDMQEQKQILPIYPSTESLRQQAIRKVMENALMDYGYLLQENLP 186

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-- 248
           K+ LQK+      EA   IH P      E  S AR+R   +E+L  ++ +L  R      
Sbjct: 187 KEFLQKEKLLGRKEAVLNIHFPENE---EKQSKARKRFMLEEILLLEMGILQNRFSVDKA 243

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +    +     +  K ++ + +  TK+Q+  IK+I  ++     + R++QGDVGSGKT+
Sbjct: 244 NKNIYKLEDNKSLVSKFIKGLDYDLTKAQKRVIKEIYSELKAGKIVNRLIQGDVGSGKTI 303

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           V+ I +   VE   Q VIMAP  ILA QHY  I     N  I VE++TG++    + K L
Sbjct: 304 VSFIMLLYMVENNYQGVIMAPTEILATQHYLGIVDEFMNLDIRVELLTGSVKGKKKEKLL 363

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             I  G   I+IGTH+L +D++ +  L L+++DEQHRFGV QR  L  K    ++++M+A
Sbjct: 364 NEIKEGLVDIVIGTHSLIEDNVIFKNLGLIVIDEQHRFGVTQRKLLRDKGNLANLIVMSA 423

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYW 487
           TPIPR+L LT  GD+D+S I E PAGR PIKT  I       ++   ++  + +G++ Y 
Sbjct: 424 TPIPRSLALTIYGDLDVSIIDELPAGRSPIKTKWIQNEIDRQKMYNFMEKKMKDGRQVYI 483

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P IEE +  N +S  E +      F +  I ++HGR +  +K+ VM+ FKN    +L+
Sbjct: 484 VSPLIEESESLNVKSAQETYEEYISIFPNRKIGLMHGRQTYKEKQKVMEQFKNHELDILV 543

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +ASI++I +A+ FGL+ LHQLRGRVGRG+  S C L      ++ S  
Sbjct: 544 STTVIEVGVNVPNASIMVIRDAQRFGLSSLHQLRGRVGRGKYQSYCFL-ESETTNEISVK 602

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL V++ T DGF IAEEDLK R  GEILG +QSG+   L      +   ++  R      
Sbjct: 603 RLEVMEETTDGFKIAEEDLKLRNSGEILGTRQSGVSDMLFTDIVKNVKEIKFVRDFVMKY 662

Query: 667 LTQDPDLTSVRGQSIRILLY-LYQYNEA 693
           L +  +   +  + +++ +Y  +  NEA
Sbjct: 663 LEK--NDGKIENEFLKMDIYKKFFNNEA 688


>gi|257784663|ref|YP_003179880.1| helicase domain-containing protein [Atopobium parvulum DSM 20469]
 gi|257473170|gb|ACV51289.1| helicase domain protein [Atopobium parvulum DSM 20469]
          Length = 730

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 215/706 (30%), Positives = 352/706 (49%), Gaps = 41/706 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   ++  R V    +  L ++         R  DLL   P  ++D  +R +I+      
Sbjct: 21  LVDSVTRLRYVNANRAEALERL------GILRVRDLLLNVPHRYLDFSHRVQIAFAQIGE 74

Query: 69  IVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             TITG ++   + + + +    +I + D TG +T  FF  +   +        ++ ++G
Sbjct: 75  DATITGRVASVKTKRPRPKMVIVEIEVVDDTGALTASFF--RQPWVAEQIHVDDEVALSG 132

Query: 128 KIKKLKNRIIMVHPHYIFHNS------------QDVNFPLIEAVYSLPTGLSVDLFKKII 175
           K+        M  P Y   ++            +  +  +I  V+    G+S    ++I+
Sbjct: 133 KVLFAYGFRQMKSPFYEVLSTAKSDSADEVCSKEIPSKAVILPVHPATEGVSPAWMRRIM 192

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
             AL+    + +W   +L+ K    S++ A   +H P   +  E     R RLA+DELL+
Sbjct: 193 SAALADTGSVCDWFPSELVSKHHLMSLSSALREVHFPSSMEAAEQA---RRRLAFDELLS 249

Query: 236 GQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
            Q+ALL  R  +          ++G   Q ++  +PF+ T  Q  A+++IL DM+  + M
Sbjct: 250 LQLALLTRRNLELAGHKPFEHVIDGPKVQALIEALPFTLTDEQNQAVQEILSDMAAPHIM 309

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R+L GDVG+GKT VA +A+AA  ++  QA +MAP  +LAQQ+ + I     +  I+  +
Sbjct: 310 NRLLLGDVGTGKTAVAAVALAAVADSSAQAAVMAPTSVLAQQYAQKIGPLLSSAGIMWAL 369

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           ITG   +  R++    +A G   ++ GT AL  + + + +L L +VDEQHRFGV QR  L
Sbjct: 370 ITGATSEEERQQIELCLADGSLSVVFGTTALLSERVVFKQLTLAVVDEQHRFGVDQRTAL 429

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +K     +L M+ATPIPRTL L+  GD+D S+IT++P     + T +     +D+    
Sbjct: 430 RKKGQGVDLLAMSATPIPRTLALSLYGDVDTSRITKRPRAGAGVTTKLCVPENLDQAYAA 489

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS----------------I 518
           +   +  G +AY +CP I+          +      +    S+                 
Sbjct: 490 VAEAVQAGHQAYLVCPLIDSNDSEEELEDIPEAARTNGKLYSATRVYEELSQTVFKDFTC 549

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++ GR+ +  K+ +M+ F+    ++L++TTVIEVG+DV +A+++I+ NA+ FGLA LHQ
Sbjct: 550 DLLTGRLPEAQKDQIMEKFRANKTQILVSTTVIEVGVDVPNATVMIVFNADRFGLATLHQ 609

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG+   +  L  +      +  RL+ L+ T DG  +AE DL+ R EGE LG +Q
Sbjct: 610 LRGRVGRGDFPGTVYLASNAKRGSTARKRLAALEQTSDGAHLAELDLELRHEGETLGYRQ 669

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           SG     I+       L+E A KDA  I TQDP+LTS    ++ I 
Sbjct: 670 SGGTTLKISDLYADADLIEAAHKDALAITTQDPNLTSDAYVTLGIE 715


>gi|162147668|ref|YP_001602129.1| ATP-dependent DNA helicase recG [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786245|emb|CAP55827.1| putative ATP-dependent DNA helicase recG [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 725

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 260/722 (36%), Positives = 398/722 (55%), Gaps = 36/722 (4%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDR------ 55
           R   L PL APL +  GVG   +  L++          R IDLLF+ P S +DR      
Sbjct: 17  RDDNLGPLLAPLGSLPGVGPALAKLLAR-----AVRGQRVIDLLFHLPESVVDRGLSPQL 71

Query: 56  ----------HYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLF 105
                      YRP +      R  T+   + +  +     R  +  L    TG   L+F
Sbjct: 72  SRRPESVVDHRYRPSLRNAVPGRGTTMQVRVRRFDAPARGTRVFFSPLEARRTGVGELVF 131

Query: 106 FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG 165
               +         G  + V+G +    +R+ M HP +I         P +E V+ L  G
Sbjct: 132 L---SPTQARQMRVGATVPVSGTLDAFGDRLQMAHPDHIVPGGDIDRIPALEPVWPLTAG 188

Query: 166 LSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPA- 224
           L     +  + +A  R P LPEW++  L+ ++ +P    A   +H P    D        
Sbjct: 189 LFPRHVRAALHQAFLRFPPLPEWLDSVLVARRHWPDFETALRQLHCPEAFPDLLRGDAWQ 248

Query: 225 ------RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
                 R+RLA DELLA Q+A+   R++ +   G  I   G +  + L    ++PT +Q 
Sbjct: 249 AAGERARQRLACDELLAEQVAMSEARRRNRNRPGRSIVGTGTLRAEALARFGYTPTGAQH 308

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A+++I  D++    M+R+LQGDVG+GKTLVA++AM AA EAG QAV+MAP  ILA+QH 
Sbjct: 309 RAVREIDSDLAASYPMMRLLQGDVGAGKTLVAMLAMLAAAEAGHQAVLMAPTEILARQHL 368

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              +K      + V  ++G++    RR  LE IA G+A +++GTHALFQD + +  L L 
Sbjct: 369 ATFQKLA---PVPVAFLSGSVKGRARRTVLEDIASGRAPLVVGTHALFQDKVVFDDLALA 425

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DEQHRFGV+QRL L +K     +L+MTATPIPRTL+LT  G++ +S++ EKPAGR P+
Sbjct: 426 VIDEQHRFGVEQRLLLGEKGDRADILVMTATPIPRTLLLTQWGEMQVSRLNEKPAGRLPV 485

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T +  +  + +V++ +   ++ G   +W+CP + E +  +  +   RF +L E F   +
Sbjct: 486 RTSLHAMASLGDVLDGIGRAIARGALVFWVCPLVTESEAMDLAAAEARFAALTERFGPIV 545

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+     +E+ +  F  G  K+L+ATTVIEVG+D+  A+I++IE+AE FGLAQLHQ
Sbjct: 546 GLAHGQQDIAVREAAIADFAAGRTKILVATTVIEVGVDIPAATIMVIEHAERFGLAQLHQ 605

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG + S C+LL+   L   +  RL++L++TEDGFLIA+ED + R  G++ G +Q
Sbjct: 606 LRGRVGRGRDESFCLLLHDDALGSTARRRLALLRDTEDGFLIADEDFRLRGGGDVTGRRQ 665

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
           SG+P   +A     D LL IA +DA+ +   +   +  R  +I  LL L+  ++A + +R
Sbjct: 666 SGLPDLRLATGARLDLLLTIAAQDAQRV--AEGGASESRRNAIAQLLELFDRHDAARILR 723

Query: 699 AG 700
           +G
Sbjct: 724 SG 725


>gi|111225168|ref|YP_715962.1| ATP-dependent DNA helicase recG [Frankia alni ACN14a]
 gi|111152700|emb|CAJ64443.1| ATP-dependent DNA helicase recG [Frankia alni ACN14a]
          Length = 725

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 204/710 (28%), Positives = 346/710 (48%), Gaps = 56/710 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL +   +G + +  L++             DLL + P  + +R     ++++    
Sbjct: 4   LDTPLKSL--LGPRAATLLAE-----GLELHVVGDLLAHLPRRYHERGELTDLADLVVGD 56

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            VT+   + +     ++  +R   ++ + DGT  + L FF +     +     G      
Sbjct: 57  TVTVQARVEKIERRPMRGSRRSMLRVTVTDGTHPLALTFFNQS--WRERDLRAGTTALFA 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVN-------FPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           GK+ + +    + +P      S+             +  +Y     +      + +  AL
Sbjct: 115 GKVDEYRGHRQLTNPEVQLLESEVEGDVTGAQFANALVPIYPAAAKVPSWTLARCVRLAL 174

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             L  L + + +DL ++    ++AEA+ ++H P    +    +  R+RL +DE L  Q+A
Sbjct: 175 DSLGPLEDPLPEDLRRRHRLCTLAEAYRLVHQPSSRVEV---ATGRKRLTWDEALVLQVA 231

Query: 240 LLLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L   R+  +       +             +PF  T  Q      I  D+ +   M R+L
Sbjct: 232 LARRRRDVQALATTARSARPDGLLAAFDAALPFPLTAGQREVGATIAADIGRPVPMHRLL 291

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-------- 350
           QG+VGSGKT+VAL +M   V+AGGQAV++AP   LA QHY  +++   +           
Sbjct: 292 QGEVGSGKTVVALRSMLIVVDAGGQAVLLAPTETLAAQHYRSLREMLGDLARSGELGADE 351

Query: 351 ---IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
               V ++TG+M    RR+AL  I+ G A +++GTHAL  + + +  L L+IVDEQHRFG
Sbjct: 352 QATRVILVTGSMGARARREALADISEGSAGLVVGTHALLHEEVVFADLGLIIVDEQHRFG 411

Query: 408 VQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI- 465
           V+QR  L  +    PH+L+MTATPIPRT+ +T  GD+++S++TE P+GR PI T ++P  
Sbjct: 412 VEQRDALRARGRRPPHLLVMTATPIPRTVAMTVFGDLEVSELTELPSGRSPIATFVVPAA 471

Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQI------------EEKKESNFRSVVERFNSLH 511
             +  D +  R++  ++ G++AY +CP+I             ++              + 
Sbjct: 472 IRSWADRMWGRIRDEVAAGRQAYVVCPRIGGDSLDDDPGALSDEPAGQTGRPAATVTDVL 531

Query: 512 EHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                       +  +HGR+    +E+ M  F  G   +L+ATTVIEVG++V +A+++++
Sbjct: 532 PQLMDGELAGLRVEPLHGRLPAAQREATMTRFAQGEIDVLVATTVIEVGVNVPNATVMVV 591

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            +A+ FG++QLHQLRGRVGRG     C+L         ++ RL  +  T DG  +A  DL
Sbjct: 592 LDADRFGVSQLHQLRGRVGRGTAPGWCLLHTATDQGTPAWHRLGAVAATNDGAELARLDL 651

Query: 626 KQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            QR+EG++LG  QSG  +   +      + L+  AR +A  ++  DP+L 
Sbjct: 652 AQRREGDVLGAAQSGGRRSLKLLALLRDEDLIREARTEATRLVDADPELD 701


>gi|289547971|ref|YP_003472959.1| ATP-dependent DNA helicase RecG [Thermocrinis albus DSM 14484]
 gi|289181588|gb|ADC88832.1| ATP-dependent DNA helicase RecG [Thermocrinis albus DSM 14484]
          Length = 783

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/702 (32%), Positives = 366/702 (52%), Gaps = 33/702 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL   +G+  K    L  +           +  L++ P  + DR     +      +   
Sbjct: 94  PLDKVKGLDFKEKKLLKSL------GVEDILSALWFLPVRYEDRRLSTSVRTALPGKRYA 147

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           +   + +          P +++  DGTG + L  F  K   +K  F    ++ V G++K+
Sbjct: 148 LKVKVVELRE-DSSDTYPLRVVCTDGTGYLVLR-FRYKDPRVKLRFKPSTQLIVYGRVKE 205

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVY--------SLPTGLSVDLFKKIIVEALSRLP 183
            +    MVHP  +           I   Y        SL         +K +        
Sbjct: 206 FQGEKYMVHPEILSEEE----AGSILPFYNIRTKNEQSLSAKTRHKRVRKAMFHITELAK 261

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIAL 240
            +PE+I +++LQK +F  I E+F + H P    +     + +P + RL YDEL   Q+AL
Sbjct: 262 HMPEYIPREILQKYNFLEIGESFYLTHRPPTGDEETLNSFLAPFQRRLVYDELFIFQLAL 321

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L R + + +    +    +  ++ + ++PF  T +Q+  I++IL D+ ++  M R+LQG
Sbjct: 322 QLRRSEIRSQKAPTLKEGKEWVEQFVSSLPFELTGAQKRVIQEILTDVEKEVPMSRLLQG 381

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA+    A  + G Q  +M P  ILA+QHYE  +K+ +   + V ++T ++ 
Sbjct: 382 DVGSGKTVVAMAISYAFAKEGYQTAVMVPTEILARQHYENFRKFLEPMGVRVGLLTSSVK 441

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT- 419
              R       A G  HI+IGTHAL Q+ +++ +L  V+VDEQHRFGV QR  L QK   
Sbjct: 442 GRERLSVKYHTARGHLHILIGTHALLQEEVEFNRLGFVVVDEQHRFGVLQRKILLQKGRG 501

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PH L+M+ATPIPRTL L+  GD+D+S + + PAGRKP+ T I+  +R +E++E ++  
Sbjct: 502 FYPHCLVMSATPIPRTLALSLYGDLDVSFLDQMPAGRKPVITTIVFESRTEEMLEVIRRE 561

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           L  G + Y I P IEE +  + ++    +      F    + ++HG+M D +K ++M+ F
Sbjct: 562 LQAGHRVYVIYPLIEESERLSLKAATTEYERWKNLFPERNVLLLHGKMKDSEKIAIMEEF 621

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +     +L++T+V+EVG+DV  A++++IE+A  FGL+QLHQLRGRVGR    S C L+  
Sbjct: 622 RE-KGDILVSTSVVEVGVDVPTATVMVIESAHRFGLSQLHQLRGRVGRSNLTSYCFLVVP 680

Query: 598 PPLSK-NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL--HDS 654
                  +  RL VL +T DGF IAEED+  R  GE+LG  QSG   F +A         
Sbjct: 681 DQERYSPAMRRLKVLVSTYDGFKIAEEDMLMRGPGELLGESQSGFFGFRVANFMREQDRR 740

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
           LLE+AR+DA  ++ +DP L  +    +R ++ LY+Y +    
Sbjct: 741 LLELAREDASELIKKDPFL--LNHADLRKMV-LYRYGDKMDL 779


>gi|222475666|ref|YP_002564083.1| ATP-dependent DNA helicase (recG) [Anaplasma marginale str.
           Florida]
 gi|255003658|ref|ZP_05278622.1| ATP-dependent DNA helicase (recG) [Anaplasma marginale str. Puerto
           Rico]
 gi|255004782|ref|ZP_05279583.1| ATP-dependent DNA helicase (recG) [Anaplasma marginale str.
           Virginia]
 gi|222419804|gb|ACM49827.1| ATP-dependent DNA helicase (recG) [Anaplasma marginale str.
           Florida]
          Length = 699

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 264/651 (40%), Positives = 376/651 (57%), Gaps = 18/651 (2%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K    L ++         R ID+L Y P  ++DR     ++E S  R+VT T  + QH  
Sbjct: 39  KKGEILERL-----CGGHRLIDILLYAPYGYVDRTN-KSLAEDSVGRVVTFTALVKQHMP 92

Query: 82  FQLQKRR---PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
               +R    PYKILL    G ++L+FF      L N    G +  V+GK++  +  + +
Sbjct: 93  PPPGRRAHRAPYKILLESEVGPVSLIFFNHSRGRLSNTLKVGHQCVVSGKLETHRGALQI 152

Query: 139 VHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197
           VHP Y+     Q      +E +YS+  G       K+I   +  LP   EWI  D+L + 
Sbjct: 153 VHPDYVTSKLDQLQEICTLEPLYSVVKGFQSKAMHKLIKAFVPLLPDWQEWIRPDVLSQN 212

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
           S+ S  ++   +H+P   ++       + RLAYDELL+   A+   + Q +   G+ +  
Sbjct: 213 SWCSWKKSVEGMHDPDSVREV---HLYKGRLAYDELLSYHAAMYFAK-QSRAAKGVSVKS 268

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            G   + + RN+ F  T  Q+SAI+ I  D + + +M  +LQGDVGSGKT+VAL A+  A
Sbjct: 269 CGVYRKLVERNLGFELTDGQKSAIEAITSDQASEKQMTMLLQGDVGSGKTVVALFAILNA 328

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           VE+GGQ  +M P  ILA+QHY  I        I  E++TG+       K  +R+  G   
Sbjct: 329 VESGGQVALMVPTEILAEQHYARISDALSGLNICTELLTGSTKNKQLLK--DRLLAGDIC 386

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTHALFQ+S+++  L LV++DEQ RFGV QR++L +K  +  VL ++ATPIPRTL  
Sbjct: 387 ILIGTHALFQESVRFRNLRLVVIDEQQRFGVVQRMRLAEKGESTDVLFISATPIPRTLEQ 446

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
              G+ID   +  +P GR+P+ T +I I RIDEV  RL+  +SEG KAYWICP+I   + 
Sbjct: 447 ILYGNIDRVTLFGRPQGRRPVHTSMIQIGRIDEVCHRLQNAISEGHKAYWICPRIVHSET 506

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S   S   RF +L E F + + I HG +  +DK+  + +F  G  K+L+ATTVIEVGIDV
Sbjct: 507 SEMTSAEGRFIALREIFGNLVGIAHGALPQVDKDKAIRAFHAGDIKILVATTVIEVGIDV 566

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            DA+II+IEN E FGL+QLHQLRGRVGR  + S CILL H  + + +Y +LSVL++++DG
Sbjct: 567 PDATIIVIENPEKFGLSQLHQLRGRVGRSSKQSFCILL-HGAIGRIAYRKLSVLRSSQDG 625

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           F IAE+DL  R  G+ILG KQSG  +F  A P    ++L  AR DA  +L 
Sbjct: 626 FFIAEQDLLLRGGGDILGYKQSGAVEFRFADPFDVQTVLN-ARSDAWSMLK 675


>gi|257467419|ref|ZP_05631730.1| ATP-dependent DNA helicase recG [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315918543|ref|ZP_07914783.1| ATP-dependent DNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313692418|gb|EFS29253.1| ATP-dependent DNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 679

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 227/648 (35%), Positives = 356/648 (54%), Gaps = 12/648 (1%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ-K 86
            K             DLL+Y P ++ +R    KI+E+  E    I   +    S   +  
Sbjct: 15  KKYKGLKTLGIMTVHDLLYYFPRAYDNRSNIKKIAELRMEEYAVIHAKLLHVYSVPTKLG 74

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFH 146
           R+  K    DG+G + +++F      LK       +    G +K+      M +P +   
Sbjct: 75  RKMTKATATDGSGFLEIVWF--GMPYLKKSLKLQEEYIFVGTVKRSMGAFQMTNPEFKLS 132

Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
             Q +    I  +YS    LS +  +K + E L    +L E I K++ QK +     +A 
Sbjct: 133 KGQKMR-GEILPIYSSHKNLSQNRLRKYLKEILFENSLLSENIPKEICQKYNILGRNQAL 191

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQK 264
           + IH P   K  E     + R A +ELL  ++ +L  R           ++EGK    ++
Sbjct: 192 SEIHFPSSEKILEEA---KRRFAIEELLIIEMGILKNRFLTDALTQSFYHLEGKKTLVKQ 248

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
            L ++PF  TK+Q+  I +I +D+ Q   + R++QGDVGSGKT+VA++ +   +E G Q 
Sbjct: 249 YLSSLPFQLTKAQKKVITEIYKDLEQGRIVNRLVQGDVGSGKTMVAMVLLLYMIENGYQG 308

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  ILA QHY  I    Q   + VE++TG++    RRK L+ +  G   ++IGTHA
Sbjct: 309 ALMAPTEILAIQHYLGIYSKMQELGLRVELLTGSIRGKKRRKLLDDLKEGNIDLLIGTHA 368

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L ++ +++++L  +++DEQHRFGV QR KL +K    ++L+MTATPIPR+L L+  GD+D
Sbjct: 369 LLEEEVRFHQLGFIVIDEQHRFGVLQRKKLREKGILTNLLVMTATPIPRSLALSIYGDLD 428

Query: 445 ISKITEKPAGRKPIKTVII-PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           +S + E P GR PIKT  I     ++++   ++  LS+GK+AY++ P IEE ++    S+
Sbjct: 429 VSILDELPPGRSPIKTKWISTEEDMEKMYAFIRKQLSQGKQAYFVAPLIEESEKLLLSSI 488

Query: 504 VERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +E    + E      IA++HGRM +I+K+ +M  FK     +L++TTVIEVGIDV +A I
Sbjct: 489 LEVEEEVKEKLPNYKIALLHGRMKNIEKDEIMQRFKQREIDILVSTTVIEVGIDVPNAVI 548

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           + I NAE FGL+ LHQLRGRVGRG++ S C L+     ++ S  RL +++ T+DGF+IAE
Sbjct: 549 MTILNAERFGLSALHQLRGRVGRGKDASFCFLISKTQ-NETSKQRLEIMEATQDGFIIAE 607

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           EDLK R  GEI G++QSG+              +++ R +    L ++
Sbjct: 608 EDLKMRNAGEIFGLRQSGLSDLRFIDLLHDVKTIKLVRDECMEYLRKN 655


>gi|183219772|ref|YP_001837768.1| ATP-dependent DNA helicase RecG [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189909907|ref|YP_001961462.1| ATP-dependent DNA helicase RecG [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774583|gb|ABZ92884.1| ATP-dependent DNA helicase, recG-related [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778194|gb|ABZ96492.1| ATP-dependent DNA helicase RecG [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 686

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 231/681 (33%), Positives = 365/681 (53%), Gaps = 27/681 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  +   LS  +G+G K    L           + + +LL Y P  ++DR++   I  + 
Sbjct: 1   MFDVTQSLSNLKGIGPKRKTVL------LEHGISTYYELLTYFPRRYLDRNFTKDII-LK 53

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           +  +VT+ G I        +K R            I L+FF R     + +F   +K+ V
Sbjct: 54  QGDVVTLLGSIVDSYIVHGKKSRLLVGFRTLNNERINLVFF-RGVNFFQKLFAIDKKVVV 112

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQD-----VNFPLIEAVYSLPT-----GLSVDLFKKII 175
           +GK++  +    ++HP Y F +  D     ++   I  +Y         GL     +K+I
Sbjct: 113 SGKLEYFRG-YQILHPEYEFLSDADDPEDSIHAGRIIPLYPSTEALKEDGLDSKGLRKLI 171

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
            + L     + E +    ++K+      EAF  IH P      E    AR+R AY+E   
Sbjct: 172 HQVLEA-GTISENLPSKFIKKRKLLGRDEAFRNIHFPDT---METVQIARKRFAYEEFYY 227

Query: 236 GQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
            Q  LL  +++ +K   +     +      + +N+PF  T+ Q+SA+  IL   +  +  
Sbjct: 228 FQRLLLYKQRERQKVKRLLWPLPKSPSRTNLEKNLPFELTEDQKSAVTTILSKTNSDSPS 287

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-VE 353
             +LQGDVGSGKT+ AL+     ++   Q V +AP  ILA+QHY+ I K+  N   + +E
Sbjct: 288 AFLLQGDVGSGKTITALLVGLHYIDNHIQVVFLAPTEILARQHYQTIYKFMGNMPFLGIE 347

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++ G   +  R + L RI  G+++IIIGTH+L Q+ + +  L LV++DEQH+FGV QR  
Sbjct: 348 LLLGGENKKTRAEKLSRIKTGESNIIIGTHSLLQEDVIFSDLGLVVIDEQHKFGVDQRET 407

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           +  K   P +L MTATPIPRTL LT  GD+ +  I  KP GRKPI T     +R   V  
Sbjct: 408 IRAKGKNPDILAMTATPIPRTLCLTLYGDLTLVNIKTKPKGRKPIDTRWYKEDRRAGVYN 467

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKE 531
            ++  +S G++ Y + P +EE ++ +  S    + +L         I ++HG+M  ++KE
Sbjct: 468 SIRKYVSSGRQCYIVYPLVEESEKVDLESCTVAYENLRTTVFPDLKIGLLHGKMKSVEKE 527

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           SVM+ FK+G  ++L+ TTV+EVG+DV +A+I+++E+AE FG++QLHQLRGRVGR +  S 
Sbjct: 528 SVMEKFKSGEIQILVTTTVVEVGVDVPNATILVVEHAERFGISQLHQLRGRVGRSDLESF 587

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           CIL+    +S+    RL  L  + DG+ +AE+DL  R  GE+LG+KQSG+P+F IA   +
Sbjct: 588 CILMTGDSISEEGRDRLEALVASNDGYYLAEKDLAIRGPGELLGVKQSGLPEFKIADLVV 647

Query: 652 HDSLLEIARKDAKHILTQDPD 672
              LL+ A++DA  I   DP+
Sbjct: 648 DRELLDEAKEDASSIPLDDPN 668


>gi|56417302|ref|YP_154376.1| ATP-dependent DNA helicase [Anaplasma marginale str. St. Maries]
 gi|56388534|gb|AAV87121.1| ATP-dependent DNA helicase [Anaplasma marginale str. St. Maries]
          Length = 699

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 264/651 (40%), Positives = 376/651 (57%), Gaps = 18/651 (2%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K    L ++         R ID+L Y P  ++DR     ++E S  R+VT T  + QH  
Sbjct: 39  KKGEILERL-----CGGHRLIDILLYAPYGYVDRTN-KSLAEDSVGRVVTFTALVKQHMP 92

Query: 82  FQLQKRR---PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
               +R    PYKILL    G ++L+FF      L N    G +  V+GK++  +  + +
Sbjct: 93  PPPGRRAHRAPYKILLESEVGPVSLIFFNHSRGRLSNTLKVGHQCVVSGKLETHRGALQI 152

Query: 139 VHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197
           VHP Y+     Q      +E +YS+  G       K+I   +  LP   EWI  D+L + 
Sbjct: 153 VHPDYVTSKLDQLQEICTLEPLYSVVKGFQSKAMHKLIKAFVPLLPDWQEWIRPDVLSQN 212

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
           S+ S  ++   +H+P   ++       + RLAYDELL+   A+   + Q +   G+ +  
Sbjct: 213 SWCSWKKSVEGMHDPDSVREV---YLYKGRLAYDELLSYHAAMYFAK-QSRAAKGVSVKS 268

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            G   + + RN+ F  T  Q+SAI+ I  D + + +M  +LQGDVGSGKT+VAL A+  A
Sbjct: 269 CGVYRKLVERNLGFELTDGQKSAIEAITSDQASEKQMTMLLQGDVGSGKTVVALFAILNA 328

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           VE+GGQ  +M P  ILA+QHY  I        I  E++TG+       K  +R+  G   
Sbjct: 329 VESGGQVALMVPTEILAEQHYARISDALSGLNICTELLTGSTKNKQLLK--DRLLAGDIC 386

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTHALFQ+S+++  L LV++DEQ RFGV QR++L +K  +  VL ++ATPIPRTL  
Sbjct: 387 ILIGTHALFQESVRFRNLRLVVIDEQQRFGVVQRMRLAEKGESTDVLFISATPIPRTLEQ 446

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
              G+ID   +  +P GR+P+ T +I I RIDEV  RL+  +SEG KAYWICP+I   + 
Sbjct: 447 ILYGNIDRVTLFGRPQGRRPVHTSMIQIGRIDEVCHRLQNAISEGHKAYWICPRIVHSET 506

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S   S   RF +L E F + + I HG +  +DK+  + +F  G  K+L+ATTVIEVGIDV
Sbjct: 507 SEMTSAEGRFIALREIFGNLVGIAHGALPQVDKDKAIRAFHAGDIKILVATTVIEVGIDV 566

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            DA+II+IEN E FGL+QLHQLRGRVGR  + S CILL H  + + +Y +LSVL++++DG
Sbjct: 567 PDATIIVIENPEKFGLSQLHQLRGRVGRSSKQSFCILL-HGDIGRIAYRKLSVLRSSQDG 625

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           F IAE+DL  R  G+ILG KQSG  +F  A P    ++L  AR DA  +L 
Sbjct: 626 FFIAEQDLLLRGGGDILGYKQSGAVEFRFADPFDVQTVLN-ARSDAWSMLK 675


>gi|260587797|ref|ZP_05853710.1| ATP-dependent DNA helicase RecG [Blautia hansenii DSM 20583]
 gi|260542062|gb|EEX22631.1| ATP-dependent DNA helicase RecG [Blautia hansenii DSM 20583]
          Length = 636

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 202/628 (32%), Positives = 327/628 (52%), Gaps = 17/628 (2%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            +   +G+G+K    L+K+        T   D L Y+P  + +      +S+++  +   
Sbjct: 11  SIRNIKGIGEKTEKLLAKL------GITTVGDFLRYYPREYDEYTEPVGVSQVTAGKKCA 64

Query: 72  ITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           + G I+     +   R       L +    + L ++      L+N    G      G + 
Sbjct: 65  VMGRITGKVGVRNTGRLTIVTATLKEENSFLQLTWYN--MPFLRNTLRSGGFYIFRGMVT 122

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
               R  M  P              +  +Y L  GL+  L  K I + L    ++ E++ 
Sbjct: 123 DKNGRKTMEQPEIFKREDYKALLHSLYPIYGLTKGLTNKLMVKTIHQILENKEIVQEYLP 182

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           ++            A + IH P+  KD         RL +DE L   +++ +M+++ +  
Sbjct: 183 EEYRNYYQLAEYNYAVSHIHFPKDKKDLLLGHH---RLVFDEFLLFILSIRMMKEKTQDM 239

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
                       + ++  +P+  T +Q+    +I +DM+    M R++QGDVGSGKT++A
Sbjct: 240 PNSFAIKPVWETENVIDGLPYPLTNAQKRVWNEIERDMTGHTLMSRLVQGDVGSGKTIMA 299

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKAL 368
            +AM  A   G QA +M P  +LA+QH++ ++K  +     +   ++TG+     +R+  
Sbjct: 300 FLAMLLAAFNGYQAALMVPTEVLAKQHFKEMEKLLKEHQLPLKAVLLTGSNTAKEKRERC 359

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            +IA G+A +IIGTHAL Q+ ++Y  L LVI DEQHRFGVQQR  L++K T PHVL+M+A
Sbjct: 360 AQIASGEAKLIIGTHALIQEKVEYENLALVITDEQHRFGVQQREDLSKKGTRPHVLVMSA 419

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +   GD+DIS + E PA R PIK  ++  +        ++  + EG++ Y I
Sbjct: 420 TPIPRTLAIILYGDLDISVMDELPAKRLPIKNCVVDTSYRPRAYHFIQKQVEEGRQVYVI 479

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           CP +EE +  +  +V++    L E   S  S+A +HGRM   +K  +M++F     ++L+
Sbjct: 480 CPMVEESEGLDAENVIDYTQILKEALPSDISVAYLHGRMKAGEKNKIMEAFAANEIQVLV 539

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE  S CI +     +  +  
Sbjct: 540 STTVIEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEHQSYCIFVQGGQDT-ETKE 598

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           RL +L  + DGF IA EDL+ R  G+  
Sbjct: 599 RLEILVKSNDGFQIAGEDLRLRGPGDFF 626


>gi|15836956|ref|NP_297644.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa 9a5c]
 gi|9105182|gb|AAF83164.1|AE003887_7 ATP-dependent DNA helicase [Xylella fastidiosa 9a5c]
          Length = 718

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 238/695 (34%), Positives = 368/695 (52%), Gaps = 41/695 (5%)

Query: 11  APLSTFRGVGKKYSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           APLS    VG   +   +   I    +      +         + DR     I+E+ +  
Sbjct: 17  APLSVLPRVGPVLAGKFAARGIFTLQDLWLLLPL--------RYEDRTRLTPIAELQDGV 68

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDG-TGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            V I   +        + R   +++L D     +T+ FF+ +   +   F  G ++   G
Sbjct: 69  AVQIEARVEAVER-SFRYRPLLRVVLTDDAHHILTMRFFHFRAAQIAR-FTVGTRVRAYG 126

Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP-- 183
             K  +    +VHP Y I    +DV     ++ VY +  G+   + +++I EAL  LP  
Sbjct: 127 VPKLGQYGWEIVHPSYRILAPGEDVRLNDCLDPVYPVIEGVGPAIVRQLIREALEHLPTD 186

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIA 239
            + E +    L     P +  A  I+H P    D       T PA++RL+ +ELLA Q++
Sbjct: 187 AVLELLPDVWLSDLGLPMLRTALLIMHRPPLNTDIARLMVGTHPAQQRLSLEELLAHQLS 246

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L   R   ++     +     +   +L  +PF  T +Q+     I  D+++   MLR++Q
Sbjct: 247 LRRQRIALQRHSAPALPDGAALVASLLHALPFHLTAAQQQVFAQIAADVAKPVPMLRLVQ 306

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA +A   AVE   Q  + AP  +LA+QH+  ++ + +   + V  +   +
Sbjct: 307 GDVGSGKTVVAALAALLAVEQNKQVALAAPTALLAEQHFINLRDWLEPLGVRVHWLAAKV 366

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R +AL  +A G A +++GTHAL Q+S+ ++ L L IVDEQHRFGV QRL L  K  
Sbjct: 367 TGKARLQALNDVASGDAQVVVGTHALMQESVVFHDLALTIVDEQHRFGVHQRLLLRDKGA 426

Query: 420 A----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                PH L+MTATPIPRTL + +  D+D+S I E P GR P++T ++   R  E++ER+
Sbjct: 427 TAGIVPHQLVMTATPIPRTLAMAAYADLDVSVIDEMPPGRTPVQTNVLSAERRPELVERI 486

Query: 476 KVVLSEGKKAYWICPQIEEKK-----------ESNFRSVVERFNSLHEHFTS-----SIA 519
           ++  ++G++ YW+C  I+E +           +   RS V+   + +E  ++      + 
Sbjct: 487 RLACAQGRQVYWVCTLIDESQTEAEQAPPSSNDIEHRSEVQAAQATYEALSAQLPGVRVG 546

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           ++HGRM   +K+  M +FK     +L+ATTVIEVG+DV +AS++IIENAE FGLAQLHQL
Sbjct: 547 LVHGRMKAAEKQRTMRAFKCNEIDVLVATTVIEVGVDVPNASLMIIENAERFGLAQLHQL 606

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           RGRVGRG  +SSC+LLY PPLS  +  RL +++ T DGF IAE+DL+ R  GE+LG +Q+
Sbjct: 607 RGRVGRGSVVSSCVLLYQPPLSMLARQRLEIMRQTNDGFAIAEKDLELRGPGELLGTRQT 666

Query: 640 GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           G+  F +A       LL      A  +L + P L 
Sbjct: 667 GLAAFRVADLARDAHLLPRVYSLANMLLDESPQLA 701


>gi|269958308|ref|YP_003328095.1| ATP-dependent DNA helicase [Anaplasma centrale str. Israel]
 gi|269848137|gb|ACZ48781.1| ATP-dependent DNA helicase [Anaplasma centrale str. Israel]
          Length = 699

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 263/651 (40%), Positives = 376/651 (57%), Gaps = 18/651 (2%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K    L ++         R ID+L Y P  ++DR     ++E S  R+VT T  + QH  
Sbjct: 39  KKGEILERL-----CGGHRLIDILLYAPYGYVDRTN-KSLAEDSVGRVVTFTALVKQHMP 92

Query: 82  FQLQKRR---PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
               +R    PYKILL    G ++L+FF      L N    G +  V+GK++  +  + +
Sbjct: 93  PPPGRRAHRAPYKILLESEVGPVSLIFFNHSRGRLSNTLKVGHQCVVSGKLETHRGALQI 152

Query: 139 VHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197
           VHP Y+     Q      +E +YS+  G       K+I   +  LP   EWI  D+L + 
Sbjct: 153 VHPDYVTSKLDQLQEICTLEPLYSVVKGFQSKAVHKLIKAFVPLLPDWQEWIRPDVLSQN 212

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
           S+ S  ++   +H+P   ++       + RLAYDELL+   A+   + Q +   G+ +  
Sbjct: 213 SWCSWKKSVEGMHDPDSVREV---HLYKGRLAYDELLSYHAAMYFAK-QSRAAKGVSVKS 268

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            G   + + RN+ F  T  Q+SAI+ I  D + + +M  +LQGDVGSGKT+VAL A+  A
Sbjct: 269 CGVYRKLVERNLGFELTDGQKSAIEAITSDQASEKQMTMLLQGDVGSGKTVVALFAILNA 328

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           VE+GGQ  +M P  ILA+QHY  I        I  E++TG+       K  +R+  G   
Sbjct: 329 VESGGQVALMVPTEILAEQHYARISNALSGLNICTELLTGSTKNKQLLK--DRLLAGDIC 386

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTHALFQ+S+++  L LV++DEQ RFGV QR++L +K  +  VL ++ATPIPRTL  
Sbjct: 387 ILIGTHALFQESVRFRNLRLVVIDEQQRFGVLQRMRLAEKGESTDVLFISATPIPRTLEQ 446

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
              G+ID   +  +P GR+P+ T +I I RIDEV  RL+  +SEG KAYWICP+I   + 
Sbjct: 447 ILYGNIDRVTLFGRPQGRRPVHTSMIQIGRIDEVCHRLQNAISEGHKAYWICPRIVHSET 506

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S   S   RF +L + F + + I HG +  +DK+  + +F  G  K+L+ATTVIEVGIDV
Sbjct: 507 SEMTSAEGRFLALRKIFGNLVGIAHGALPQVDKDEAIRAFHAGDIKILVATTVIEVGIDV 566

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            DA+II+IEN E FGL+QLHQLRGRVGR  + S CILL H  + + +Y +LSVL++++DG
Sbjct: 567 PDATIIVIENPEKFGLSQLHQLRGRVGRSSKQSFCILL-HGDIGRIAYRKLSVLRSSQDG 625

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           F IAE+DL  R  G+ILG KQSG  +F  A P    ++L  AR DA  +L 
Sbjct: 626 FFIAEQDLLLRGGGDILGYKQSGAVEFRFADPFDVQTVLN-ARSDAWSMLK 675


>gi|257063714|ref|YP_003143386.1| RecG-like helicase [Slackia heliotrinireducens DSM 20476]
 gi|256791367|gb|ACV22037.1| RecG-like helicase [Slackia heliotrinireducens DSM 20476]
          Length = 723

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 210/707 (29%), Positives = 343/707 (48%), Gaps = 45/707 (6%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L AP+++  GV    +  LS++            DLL + P  ++D      I      
Sbjct: 10  ELDAPVTSVSGVSSGRAAGLSRL------GIRTVRDLLQHFPHRYVDMSRISTIEGAGIG 63

Query: 68  RIVTITGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             VTI G I +    + + R     + + DGTG +   FF  +   +      G +++V 
Sbjct: 64  DSVTIVGTIHEVRLKRPRPRLSLTEVTIVDGTGTLIATFF--RQPWIAKTLKTGTRVSVA 121

Query: 127 GKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           G ++       M  P   +  + Q+     I  V+     ++  + + I+  A+      
Sbjct: 122 GTLEFNYGYKRMTAPFLDVLEDDQNPMSGQIVPVHHATGKVTPGIMRLIVRNAVDSAWGA 181

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL-MR 244
            + +  +L  K    S + A+  IH P+  +D      AR RLAY+E+L  Q+ +L+  R
Sbjct: 182 YDPLPLELRTKYRLMSRSNAYRSIHFPQDMRDV---HQARRRLAYEEVLMLQMHMLMSAR 238

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            +           +G  ++ +++ +PFS T  QE A+ +I   M+Q   M  +L GDVG+
Sbjct: 239 DRQDDGPAHEHVFDGPYSEALMKALPFSLTSDQERAVAEIQMRMAQPKVMSHMLLGDVGT 298

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT VA  A+AAA +A  Q  +MAP  +LA Q+   +        I   ++TG+ P   R
Sbjct: 299 GKTAVAGFAIAAAADARFQTFMMAPTEVLATQYAASLGGLFDQAGISWALLTGSTPAEDR 358

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
              L R+A G   ++ GTHAL +D +  +   LVI+DEQ RFGV QR +L +K      L
Sbjct: 359 EDILMRLASGHTDVVFGTHALLEDDVVAHDCGLVIIDEQQRFGVDQRKRLIEKGRNADAL 418

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            MTATPIPRTL L   G++ +S + + P  R P KT ++      +  +        G++
Sbjct: 419 FMTATPIPRTLALALYGNLSLSYLRQVPFDRPPRKTQVVDFRDRGKAYDAALAACRRGEQ 478

Query: 485 AYWICPQI----------------------------EEKKESNFRSVVERFNSLHEHFTS 516
            Y +CP +                            E+ ++ + ++       L     +
Sbjct: 479 VYVVCPLVGQKRKADDDKKKDDRDAEEETPSYIESDEDMRQDDQKAAEAEAAFLQSKVFA 538

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              + ++HGRM    K + M+ F+ G   +L+ TTVIEVG+DV +A+++IIE+A+ FGL+
Sbjct: 539 DFKVGLLHGRMDAKAKHAAMEDFRAGQTDVLVCTTVIEVGVDVPNATVMIIEDADRFGLS 598

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG +     L+     S+++  RLS ++ T+DGF +AE DL  R+EG+IL
Sbjct: 599 QLHQLRGRVGRGTKPGEVYLIAATS-SEDALERLSAMEATDDGFELAERDLALRREGDIL 657

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           G +Q G     +        L+E+A +DA+ +L  DP+  +   Q++
Sbjct: 658 GNRQHGASVLRLVNIVRDGKLIELAHEDAEALLDADPEFETPAMQAL 704


>gi|145593830|ref|YP_001158127.1| ATP-dependent DNA helicase RecG [Salinispora tropica CNB-440]
 gi|145303167|gb|ABP53749.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 733

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 220/737 (29%), Positives = 363/737 (49%), Gaps = 58/737 (7%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             PL     VG K +  L+  ++   A      DLL++ P  + +R     I  +     
Sbjct: 9   DTPLGKL--VGAKTARALATHLDLHTAG-----DLLYHVPRRYDERGEHTDIRSLDVGEQ 61

Query: 70  VTITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           VT+   + + +   +++RR    ++ + DG+G    L F+      +     GR     G
Sbjct: 62  VTVLAQVQRTAVRPMRQRRGNLLEVTVGDGSGGALTLTFFGNQVWRERDLRPGRWGLFAG 121

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVN-----------FPLIEAVYSLPTGLSVDLFKKIIV 176
           K+ + ++R  +  P Y+   + D                +  VY     +   +  + + 
Sbjct: 122 KVTEFRSRRQLNGPEYVLLGAGDEGEVAASEEVEEFAGALIPVYPAAAAVPTWVIARCVR 181

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
             L  +    + +   +   ++   +  A   +H P      E    AR RL +DE  A 
Sbjct: 182 VVLDTVDPPADPVPATVRTTRNLVGLGAALREVHRPSSK---EALYRARRRLKWDEAFAV 238

Query: 237 QIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ L+  ++Q       P  V +G +       +P+  T  Q     +I  D++  + M 
Sbjct: 239 QLTLVRRKRQAADRPARPRPVVDGGLRDAFDARLPYQLTAGQREVGTEIATDLASAHPMH 298

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-----------KKY 344
           R+LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LA QHY  I           +  
Sbjct: 299 RLLQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHYRGILDLLGSLGRAGELD 358

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                  VE++TG++    RR+AL  +  G A I++GTHAL  + + +  L LV+VDEQH
Sbjct: 359 AAEHATRVELVTGSLGAVARRRALGEVRSGVAGIVLGTHALLYEGVDFADLGLVVVDEQH 418

Query: 405 RFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           RFGV+QR  L  KA   PHVL+MTATPIPRT+ +T  GD+++S +++ P GR PI + ++
Sbjct: 419 RFGVEQRDALRAKADQPPHVLVMTATPIPRTVAMTVYGDLEVSTLSQLPRGRSPIASHVV 478

Query: 464 PINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--- 516
           P       +D    RL+  ++ G +AY +CP+I +   S+  +  E   +          
Sbjct: 479 PAAEKPAFLDRAWRRLREEVAAGHQAYVVCPRIGDGPSSDEEAAGEDDTTRRPPLAVTEV 538

Query: 517 ------------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                        I ++HGR+   +K++VM SF  G   +L+ATTV+EVG+DV +A+++I
Sbjct: 539 APLLAEGPLHGLRIGVLHGRLPAEEKDAVMRSFAAGDLDVLVATTVVEVGVDVPNATVMI 598

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           + +A+ FG++QLHQLRGRVGRG     C+L+       ++  RL  + +T DGF +AE D
Sbjct: 599 VLDADRFGVSQLHQLRGRVGRGSAAGLCLLVTEAMEGSSARERLDAVGSTTDGFTLAELD 658

Query: 625 LKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+QR+EG++LG  QSG      +        L+  AR +A  ++ +DP+L  VR  ++  
Sbjct: 659 LEQRREGDVLGATQSGRRSHLRLLSLLRDADLIRDARTEAIGLVEEDPEL--VRHPALAA 716

Query: 684 LLYLYQYNEAFQFIRAG 700
            +      +  +++  G
Sbjct: 717 SVAALVDADRAEYLEKG 733


>gi|24216644|ref|NP_714125.1| ATP-dependent DNA helicase RecG [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45658972|ref|YP_003058.1| ATP-dependent DNA helicase RecG [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24197981|gb|AAN51143.1| ATP-dependent DNA helicase RecG [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45602217|gb|AAS71695.1| ATP-dependent DNA helicase protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 724

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 221/711 (31%), Positives = 372/711 (52%), Gaps = 53/711 (7%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P++  +GVG   +  L+ I            DLL + P  ++DR+    +  +  
Sbjct: 13  NGLLLPVTVIKGVGPSKAAALASI------GIDTLQDLLNFFPRRYLDRNLTDNVL-LKT 65

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              VT+   +        +K R            I+++FF R     + +F  G  +  T
Sbjct: 66  GETVTLIVEVIDAYLAHGKKSRLVVGTKTRNNERISIVFF-RGVNFFQKIFQPGTTLVAT 124

Query: 127 GKIKKLKNRIIMVHPHYIFHNS------------------------------QDVNFPLI 156
           GK++  +    ++HP Y    S                              + ++   I
Sbjct: 125 GKLEYFRG-FQLIHPDYEILTSAIKTTYPISSTGSKKKKQEQEPEEELSELPEMIHAGRI 183

Query: 157 EAVYSL-----PTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIH 210
             +Y         GL    F+KI+  AL +L   +PE +  ++++++      E++  IH
Sbjct: 184 IPLYPSGEVLKSEGLDSRGFRKILYSALEKLKGKIPEILPNEIVKRRGLILREESYREIH 243

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNI 269
            P      +    A+ RL Y+EL    + +   +K+ +K   +     E + A K+ +N+
Sbjct: 244 FPTDENSLD---TAKYRLKYEELFYFNLLIEHKKKEREKIKRVLWPLPESETANKVRKNL 300

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T+ Q SA++ I +  +++  +  +LQGDVGSGKTLVAL+     ++   Q  ++AP
Sbjct: 301 PFQLTEDQNSALQKIKELTNKEQPIAVLLQGDVGSGKTLVALLTALRYIDNQIQVCMVAP 360

Query: 330 IGILAQQHYEFIKKYTQNTQII-VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
             ILA+QHY+ I  +  N   + +E++ G  P+ +R + L RI  G    +IGTH++FQ+
Sbjct: 361 TEILARQHYQTILSFLGNMPFLGIELLVGKEPKKNRYEKLYRIKKGDTLFVIGTHSVFQE 420

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + + +L LVI+DEQH+FGV QR  L  K   P +L MTATPIPRTL LT  GD+D+  I
Sbjct: 421 DVYFSELGLVIIDEQHKFGVDQRETLRSKGKNPDILAMTATPIPRTLCLTLYGDLDLLTI 480

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             KP GR PI+T     +R + + + ++  +S G++ Y + P +EE ++ + +S +E + 
Sbjct: 481 KSKPKGRMPIQTKWFQEDRREGIYKSIRKYVSSGRQCYIVYPLVEESEKVDLKSCIEAYE 540

Query: 509 SLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            L         + ++HG+M   +K+ VM  F     ++L++TTVIEVGIDV ++++++IE
Sbjct: 541 YLKHEIFPDFEVGLVHGKMEVEEKDRVMREFSKNRIQILVSTTVIEVGIDVPNSTVMVIE 600

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           +A+ FG++QLHQLRGRVGRG++ S CIL+    +++++  RL  + N  DGF ++E DL+
Sbjct: 601 HADRFGISQLHQLRGRVGRGDQESFCILMTDSKVTEDAKVRLEAMVNFSDGFALSEIDLQ 660

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            R  GE++G++QSG+P F IA      +L+E+ R+DA  +     DL    
Sbjct: 661 LRGPGELMGVRQSGLPDFKIADLRKDSNLIELTREDAT-LFGNPGDLEKEE 710


>gi|331698532|ref|YP_004334771.1| ATP-dependent DNA helicase RecG [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953221|gb|AEA26918.1| ATP-dependent DNA helicase RecG [Pseudonocardia dioxanivorans
           CB1190]
          Length = 748

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 213/704 (30%), Positives = 360/704 (51%), Gaps = 64/704 (9%)

Query: 37  NETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH--SSFQLQKRRPYKILL 94
           +     DLL ++P  ++DR     IS +     VT+   + +      + ++ +   +++
Sbjct: 36  DLHTVGDLLRHYPRRYVDRGKLSDISGLEIGEHVTVVAKVEKATLRDMRSRRGKLLNVVI 95

Query: 95  NDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
            D  G  ++  FF      + +V   G +   +GK+   ++++ + HP +      +   
Sbjct: 96  RDDKGGRLSCTFFNGYK--VSHVLTPGVRALFSGKVGVFQSQLQLTHPEFEPLEEGEDVR 153

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
           P   +VY     L+     + + + L +L    + + +D+ +++  P +  A   IH P 
Sbjct: 154 P-FVSVYPAVDKLNSWDIARCVRQVLDQLDDPTDPLPEDIRRREKLPELGRALRRIHLPE 212

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFS 272
              D      AR RL +DE L  Q+AL L R+   +  G       G +       +PF+
Sbjct: 213 TEADH---HAARARLVWDEALGVQLALALRRRHATERPGTASPPRAGGLLDAFDARLPFA 269

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q +   +I  D++++  M R++QGDVG+GKT+VAL AM   V++G QA ++AP  +
Sbjct: 270 LTDGQRAVGTEIAADLARETPMNRLVQGDVGAGKTVVALRAMLQVVDSGRQAAMLAPTEV 329

Query: 333 LAQQHYEFIKKYTQNTQI-----------IVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           LA QH   ++                    + ++TG++  A RR+A+  +  G A I++G
Sbjct: 330 LAAQHARSLRSLLGPLGRAGELDGAEEATRITLLTGSLGTAARRQAMLDVQSGAAGIVVG 389

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSL 440
           THAL QD + +  L LV+VDEQHRFGV+QR  L  +    PH+L+MTATPIPRT+ +T  
Sbjct: 390 THALIQDKVGFADLGLVVVDEQHRFGVEQRDALRGRGERTPHMLVMTATPIPRTVAMTVY 449

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQI---- 492
           GD+++S +TE P GR PI T ++P       ++ V +R++  +++G + Y +CP++    
Sbjct: 450 GDLEVSALTELPRGRSPISTTVVPAGEKPAWLERVWQRIREEVADGHQVYVVCPRVGGDP 509

Query: 493 -----------------------------EEKKESNFRSVVERFNSLHEHFTS--SIAII 521
                                        ++       +V+E    L E   +   + I+
Sbjct: 510 AKADDGDLFEGELVDLDDPDPDVGGGAGSDDGARRPPLAVLEVAPKLAEGPLAGLRLGIL 569

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG++   +K++ M +F+ G   +L+ATTVIEVG+DV +++ ++I +A+ FGL+QLHQLRG
Sbjct: 570 HGKLPADEKDATMRAFEAGEIDVLVATTVIEVGVDVPNSTGMVILDADRFGLSQLHQLRG 629

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           RVGRGE    C+L+   P    +  RL  + +T DGF +A  DL+ R+EG++LG  QSG 
Sbjct: 630 RVGRGEAPGVCLLVTDVPAGTTARERLDAIASTTDGFELARLDLELRREGDVLGAVQSGK 689

Query: 642 PK-FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
                +     H++++E AR  A  I+  DPDL    G  +R L
Sbjct: 690 RSTLKLLSLLRHETVIEKARVYATDIVDHDPDLAGHPG--LRTL 731


>gi|257124969|ref|YP_003163083.1| ATP-dependent DNA helicase RecG [Leptotrichia buccalis C-1013-b]
 gi|257048908|gb|ACV38092.1| ATP-dependent DNA helicase RecG [Leptotrichia buccalis C-1013-b]
          Length = 689

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 232/687 (33%), Positives = 366/687 (53%), Gaps = 24/687 (3%)

Query: 16  FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY 75
            +GV K       K+            DLL++ P ++ +R    KI+EI  +  V + G 
Sbjct: 16  IKGVTKTNIPKFRKL------GVFILYDLLYFFPRAYENRSNHKKIAEILADEFVILQGT 69

Query: 76  ISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
           I    +  ++  R  ++ +L+D +G I L++F  +   +KN    G +ITV GK++K   
Sbjct: 70  IVNVVNQYIKAGRTMFRAVLSDDSGMIELVWFNNR--FVKNGIHIGDEITVYGKVRKT-V 126

Query: 135 RIIMVHPHYIFHNSQDVNF---PLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIE 190
           +  +V+P Y   N    +      I  +Y     L   + +K++  AL     +L E + 
Sbjct: 127 KFQLVNPEYKKINQASFDMHEQKQILPIYPSTESLRQQVIRKVMENALMDYGYLLQENLP 186

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-- 248
           K+ LQK+      EA   IH P      E  S AR+R   +E+L  ++ +L  R      
Sbjct: 187 KEFLQKEKLLGRKEAVLNIHFPESE---EKQSKARKRFMLEEILLLEMGILQNRFSVDKA 243

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +    +     +  K ++++ +  TK+Q+  IK+I  ++     + R++QGDVGSGKT+
Sbjct: 244 NKNLYKLEDNKSLVSKFIKSLDYELTKAQKRVIKEIYSELKAGKIVNRLIQGDVGSGKTI 303

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           V+ I +   VE   Q VIMAP  ILA QHY  I     N  I VE++T ++    + K L
Sbjct: 304 VSFIMLLYMVENNYQGVIMAPTEILATQHYLGIVDEFMNLDIRVELLTRSVKGKKKEKLL 363

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             I  G   I+IGTH+L +D++ +  L L+++DEQHRFGV QR  L  K    ++++M+A
Sbjct: 364 NEIKEGLVDIVIGTHSLIEDNVIFKNLGLIVIDEQHRFGVTQRKLLRDKGNIANLIVMSA 423

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYW 487
           TPIPR+L LT  GD+D+S I E PAGR PIKT  I       ++   ++  + +G++ Y 
Sbjct: 424 TPIPRSLALTIYGDLDVSIIDELPAGRSPIKTKWIQNEIDRQKMYNFMEKKMKDGRQVYI 483

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + P IEE +  N +S  E +      F +  I ++HGR +  +K+ VM+ FKN    +L+
Sbjct: 484 VSPLIEESESLNVKSAQETYEEYISIFPNRKIGLMHGRQTYKEKQKVMEQFKNHELDILV 543

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG++V +ASI++I +A+ FGL+ LHQLRGRVGRG+  S C L      ++ S  
Sbjct: 544 STTVIEVGVNVPNASIMVIRDAQRFGLSSLHQLRGRVGRGKYQSYCFL-ESETTNEISTK 602

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL V++ T DGF IAEEDLK R  GEILG +QSG+   L      +   ++  R      
Sbjct: 603 RLEVMEETTDGFKIAEEDLKLRNSGEILGTRQSGVSDMLFTDIVKNVKEIKFVRDFVMEY 662

Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEA 693
           L +  +   +  + +++ +Y   +N A
Sbjct: 663 LKK--NDGKIENEFLKMDIYRKFFNNA 687


>gi|169342649|ref|ZP_02863691.1| ATP-dependent DNA helicase RecG [Clostridium perfringens C str.
           JGS1495]
 gi|169299155|gb|EDS81225.1| ATP-dependent DNA helicase RecG [Clostridium perfringens C str.
           JGS1495]
          Length = 690

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 225/663 (33%), Positives = 365/663 (55%), Gaps = 20/663 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           ++  +   +GVG K    L+K+           +DLL Y P  +   +    ++  + + 
Sbjct: 16  IYDDIGLVKGVGPKLKERLNKV------GIFTVLDLLLYFPRDYEFLNDDISLNGDTSDE 69

Query: 69  IVTITGYISQH-SSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              +      + SS + +  +    I       ++   +F +    +K  F  G +  + 
Sbjct: 70  KAILKCKAKSYGSSIRTRNGKTLTTINFTYNNLKVIGKWFNQ--PYIKRNFILGNEYNLM 127

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK KK+ N + +++P       ++ N   I  +Y+L  GL+  +  K+I E L  + ++ 
Sbjct: 128 GKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINEILKNM-IIK 183

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +  ++++K    S+ +A   IH P    + +       RL + EL    + +++M+  
Sbjct: 184 ENLPDEIVKKYKLISLDKAIRSIHFPAGRGELQSAIN---RLKFQELFTYSLKIIMMKAH 240

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            KKE          + + +  ++P++ T +Q   +++IL D  +   M R++QGDVGSGK
Sbjct: 241 IKKENSGISFKMSPLLKDLKESLPYTLTNAQSRTLREILLDQKRNIAMNRLVQGDVGSGK 300

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVALI+M      G Q V+MAP  ILA QHY   KKY     + +E++TG+  +  +++
Sbjct: 301 TLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLDQFGVDIELLTGSTKEKEKKR 360

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E+IA G+  ++IGTHAL QD ++   L LV+ DEQHRFGV+QR +L  K     VL+M
Sbjct: 361 IKEKIASGKEIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLINKNKRADVLVM 420

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L    D+DIS I E P GRKPI T+++ +N+  +        + +G++ Y
Sbjct: 421 TATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFALKEVEKGRQFY 480

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            + P IEE ++ N  SV + +  L         I I+HG+M+  +K+ ++++FKNG  K 
Sbjct: 481 IVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMAGKNKDKIINTFKNGEIKG 540

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE  S CIL+ +       
Sbjct: 541 IISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCILIANTKNDIT- 599

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ ++  + DGF IAEEDLK R  GE+ G++Q G   F++A      ++L+ A  +AK
Sbjct: 600 RRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVDDINILKCANHEAK 659

Query: 665 HIL 667
            I+
Sbjct: 660 LIV 662


>gi|188588599|ref|YP_001920573.1| ATP-dependent DNA helicase RecG [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498880|gb|ACD52016.1| ATP-dependent DNA helicase RecG [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 677

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 228/666 (34%), Positives = 356/666 (53%), Gaps = 20/666 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +++ +S+ +GVG K +  L+K            +DLL Y P  +          +I+ + 
Sbjct: 3   IYSEISSLKGVGPKLTEKLNK------CGIFNILDLLLYFPRDYEFIDSNILFEDINGDE 56

Query: 69  IVTITGYISQHS-SFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              +   + +     + +  +    I       ++   +F +K   +KN F+  +   + 
Sbjct: 57  KQILRCKVIRIKGDIKTKTGKILTTIEFEYNGHKVYGKWFNQK--YIKNTFYNNKVYNLM 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK K++   + + +P  +   + D +   I   Y L   +S  + +K+I   +  + ++ 
Sbjct: 115 GKFKRIGKTLEVANPTVVCEEALDNS---ILPKYPLKGDISNKIIEKLINLVIDSI-IIK 170

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +  D+L K +  S+ +A   IH P+     E       RL + EL    + LLL++ +
Sbjct: 171 ENLPLDMLNKYNLVSLNDAIRSIHFPKNKDLLEKAII---RLKFQELFTYSLKLLLVKHK 227

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
             K             +++  +IP+S T +Q   +++IL+D   +  M R++QGDVGSGK
Sbjct: 228 LNKNKNGIYFEWNNELKRLKDSIPYSLTNAQTKVVREILRDQKSQKPMNRLVQGDVGSGK 287

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VALI++   ++ G Q   MAP  ILA QHYE  K   Q+  I VEI+TG+     +++
Sbjct: 288 TIVALISIFNVIKNGYQCAFMAPTEILANQHYEESKNLFQDFNIDVEILTGSTSLKEKKR 347

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E+I      ++IGTH LFQD + + +L L+I DEQHRFGV+QR KL  K      L+M
Sbjct: 348 IKEKIKQENPMLLIGTHTLFQDDVVFNRLGLIITDEQHRFGVEQRSKLINKGKKADCLVM 407

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L    D+D+S I E P GRK I T     +  D   E     ++ G++ Y
Sbjct: 408 TATPIPRTLALYLYSDLDVSIIDELPPGRKKIDTRFYQEHNRDIGYEIALEEINNGRQVY 467

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP I+E ++    SV   +  L       I   I+HG+M   +K+  ++ FKN   K+
Sbjct: 468 IVCPLIDEDEKEELNSVETLYTKLKNGIFKDIGVEILHGKMKSSEKQDKINRFKNNEFKV 527

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LI+TTVIEVG++V +AS++IIENAE FGLAQLHQLRGRVGRGE  S CIL+     S  +
Sbjct: 528 LISTTVIEVGVNVPNASVMIIENAERFGLAQLHQLRGRVGRGEYASYCILIAKAK-SNIT 586

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R++++  + DGFLI+EEDLK R  GE+ G KQSG  +F++A      S+L  A+ +A 
Sbjct: 587 KKRMTIMTESTDGFLISEEDLKLRGSGEMFGRKQSGDAEFILADLYEDISILRAAKHEAM 646

Query: 665 HILTQD 670
            +L  D
Sbjct: 647 EMLHND 652


>gi|160871992|ref|ZP_02062124.1| ATP-dependent DNA helicase RecG [Rickettsiella grylli]
 gi|159120791|gb|EDP46129.1| ATP-dependent DNA helicase RecG [Rickettsiella grylli]
          Length = 721

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 241/691 (34%), Positives = 375/691 (54%), Gaps = 37/691 (5%)

Query: 14  STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73
           +   GVG K S +L K       +    +         + +R     I  + E +   IT
Sbjct: 24  TQLTGVGPKISHYLHKCGIHHLQDLLLHLP------LRYENRTQLTPIRSVREGQHALIT 77

Query: 74  GYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
           G I  H   +++ ++ Y   L+D TG +TL FF+ K + ++  F +G ++   G I   K
Sbjct: 78  GIIQDHP-LRIKNKKSYSCKLSDETGSVTLRFFHLKAKQIQQ-FKKGLRLLCFGPIHAQK 135

Query: 134 NRI---IMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEAL--------- 179
           NR     M+HP Y F          P + ++Y    G++  L+ K+I +           
Sbjct: 136 NRFFEREMIHPDYEFLRPHQSPLLPPYLTSIYPSTPGMTQRLWHKLITQVFHLLFEMTTE 195

Query: 180 -----SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR----ERLAY 230
                 +    P+++ + LL++ + PS+ +A   IH P      +  +  +    +RLA 
Sbjct: 196 KPFVHKQQHYFPDYLPEHLLKRIALPSLLDALYYIHRPPANAPLDLLARRKHIAQQRLAL 255

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           +ELLA  +++  M+K+    I     +   + ++    +PF  T SQ+  IK+I QDM +
Sbjct: 256 EELLAHSLSVQQMKKKRAAGIAPRFKLNSALMKRFQTALPFQLTSSQQRIIKEINQDMQR 315

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              M R+LQGDVGSGKT+VA  A   A+    Q  +MAP  +L++QHY+   ++      
Sbjct: 316 ATPMQRLLQGDVGSGKTIVAAFAALLAIANHYQVALMAPTELLSEQHYQHFHRWLTPLGF 375

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V  +   +    +++ L+ I  G+AHI IGTHALFQ+ + +  L  +I+DEQHRFGV+Q
Sbjct: 376 HVVCLNARLQTTAKKQILDEIKTGKAHIAIGTHALFQNEVYFSNLGFIIIDEQHRFGVKQ 435

Query: 411 RLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           RL L +K+       H L MTATPIPRTL +TS  D+DIS + E P GR P+KT++IP  
Sbjct: 436 RLDLWKKSQQKNLQAHQLFMTATPIPRTLAMTSFTDLDISFLDELPPGRLPVKTLVIPER 495

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
           R  +VIE++++   E K+ YW+CP IEE    ++++    F +L    T   + +IHGR+
Sbjct: 496 RRSKVIEKVRITCGEKKQVYWVCPLIEESGLQHYQAAETLFKTLKADLTDLRLGLIHGRL 555

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +KES+M  FK G   LL++T++IEVG+DV +A++++IENAE  GLAQLHQLRGRVGR
Sbjct: 556 HSTEKESIMRDFKKGVIDLLVSTSIIEVGVDVSNANLMVIENAERLGLAQLHQLRGRVGR 615

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
               S CILLY   LS  +  RLS+++ + DGF IA++DL+ R  GEI G++Q+G  +  
Sbjct: 616 SSSKSCCILLYQ-SLSLLAKERLSIMRLSNDGFTIAQKDLELRGPGEIWGLRQTGWKQLR 674

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           IA  +    L+      +  + T+ P L   
Sbjct: 675 IACLKRDHDLIPQVLHLSTLLQTKYPYLIQP 705


>gi|332297440|ref|YP_004439362.1| ATP-dependent DNA helicase RecG [Treponema brennaborense DSM 12168]
 gi|332180543|gb|AEE16231.1| ATP-dependent DNA helicase RecG [Treponema brennaborense DSM 12168]
          Length = 744

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 224/752 (29%), Positives = 358/752 (47%), Gaps = 88/752 (11%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  +  P+ST  G+G   +   + +            DLL Y+P  + DR  R  +++  
Sbjct: 3   LTEIETPVSTLAGIGPARAKLFAAL------GIYTVADLLAYYPRDWEDRTQRVPLAQFR 56

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
               V     ++ HS F   K +  KI + DG+ +  L+ F R    L+    +G  I V
Sbjct: 57  SNGKVHTVARVTGHSWFGYGKMKTLKIHITDGSADAELVAFNR--PFLEKSLPDGAIIAV 114

Query: 126 TGKIKKLKNRII-------MVHPHYIFHNSQDVNFP--LIEAVYSLPTGLSVDLFKKIIV 176
           TG   +   R+        ++ P       +    P   +  VYSL  GLS    +K + 
Sbjct: 115 TGTFSERYGRLQSSAFETALIAPGGSLAEYETKRVPGSAVFPVYSLTAGLSQAQMRKAVR 174

Query: 177 EALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           +AL      + + +  D+++ +       A + +H P           AR  L Y+EL  
Sbjct: 175 KALQEYARGIEDTLPADVIETRHLLRKQAALHAMHCPET---LRQALDARRTLIYEELYH 231

Query: 236 GQ----IALLLMRKQFKKEIGIPINVEG--------------------------KIAQKI 265
            Q    ++ L  + +   +   P    G                             +K+
Sbjct: 232 FQTAIGLSALRHKGRLPDDEKQPFFATGSDVMPENSEREHTQETLTETFARKLSPRQKKL 291

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNR-------------MLRILQGDVGSGKTLVALI 312
             ++PF  T  Q   I ++  D+ +  +             M R++QGDVGSGKTL A  
Sbjct: 292 FDSLPFELTADQMKCISEMNDDIDRAEQSRAKAAAGKPLYTMARLVQGDVGSGKTLTAFF 351

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           A     + GGQ  ++AP  +LA+QH E   K  + T + +  +TGN+    R   L+ + 
Sbjct: 352 ACLRTADWGGQCALLAPTELLARQHAESAAKLLEQTGVTLAFLTGNITAESRGPLLKSLK 411

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP----------- 421
            G   I+IGTHALF  ++ Y  L L ++DEQHRFGV QR  + +K   P           
Sbjct: 412 AGDIDIVIGTHALFSRNVHYKDLRLAVIDEQHRFGVLQRNAIIEKGRQPAAPDSPQYVVP 471

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            +L+++ATPIPRTL LT+ GD+D+S I   P GR P+KT +  +     V + ++  +++
Sbjct: 472 SLLMLSATPIPRTLALTAFGDLDVSVIRTMPRGRLPVKTYLTRMGNEKNVYDYVRAEVAK 531

Query: 482 GKKAYWICPQIEEKKESNF-----------RSVVERFNSLHEHFT--SSIAIIHGRMSDI 528
           G +AY++ P+IEE +  +            ++  + +  L +       IA++H R+ + 
Sbjct: 532 GHQAYFVYPRIEESESDDDGSLIPDTGNGIKNAEDMYRFLSQEVYPQFRIALVHSRIEEA 591

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           ++  ++D FKNG   +L+AT+V+EVG+DV +A+ +++E+A+ FG+A LHQLRGRVGR   
Sbjct: 592 EQHRILDDFKNGRTDILVATSVVEVGVDVPNATCMVVEHADRFGMAALHQLRGRVGRSSL 651

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            S C L+Y   +SK    R+  L  T DGF+IAE+DL+ R  GE+ GI+QSG     IA 
Sbjct: 652 QSFCFLVYGAHISKTGIERMKALHETTDGFVIAEQDLQLRGPGEVSGIQQSGYLTLGIAD 711

Query: 649 PELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
           P     LLE+AR+DA   + + P   S   Q 
Sbjct: 712 PVRDSQLLELARQDAFDHIRRSPAYASALAQP 743


>gi|71276566|ref|ZP_00652840.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Dixon]
 gi|71900210|ref|ZP_00682349.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1]
 gi|71162637|gb|EAO12365.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Dixon]
 gi|71730043|gb|EAO32135.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1]
          Length = 718

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 233/694 (33%), Positives = 361/694 (52%), Gaps = 39/694 (5%)

Query: 11  APLSTFRGVGKKYSLF-LSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
           APLS    VG   +    ++ I                    + DR     I+E+ +   
Sbjct: 17  APLSVLPRVGPVLAGKCAARGIFTLQDLWLLLP-------LRYEDRTRLTPIAELQDGVA 69

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDG-TGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           V I   +        + R   +++L+D     +T+ FF+ +   +   F  G ++   G 
Sbjct: 70  VQIEARVEAVER-SFRYRPLLRVVLSDDAHHILTMRFFHFRAAQIAR-FTVGTRVRAYGV 127

Query: 129 IKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP--V 184
            K  +    +VHP Y I    + V+    ++ VY +  G+   + +++I EAL  LP   
Sbjct: 128 PKLGQYGWEIVHPSYRILAPGEAVSLNDCLDPVYPVIDGVGPAIVRQLIREALEHLPTDA 187

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIAL 240
           + E +    L     P++  A  I+H P    D       T PA++RL+ +ELLA Q++L
Sbjct: 188 VLELLPDVWLSDLGLPTLRTALLIMHRPPLDADIARLMVGTHPAQQRLSLEELLAHQLSL 247

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
              R   ++     +     +   +L  +PF  T +Q+     I  D+++   MLR++QG
Sbjct: 248 RRQRIALQRHSAPALPDGAALVASLLHALPFHLTAAQQRVFAQIAADVAKPVPMLRLVQG 307

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A   AVE   Q  + AP  +LA+QH   ++ + +   + V  +   + 
Sbjct: 308 DVGSGKTVVAALAALLAVEQNKQVALAAPTALLAEQHLINLRDWLEPLGVRVHWLAAKVT 367

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R +AL  +A G A +++GTHAL Q+S+ ++ L L IVDEQHRFGV QRL L  K   
Sbjct: 368 GKARLQALNDVASGDAQVVVGTHALMQESVVFHDLALTIVDEQHRFGVHQRLLLRDKGAI 427

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL + +  D+D+S I E P GR P++T ++   R  E++ER++
Sbjct: 428 AGIVPHQLVMTATPIPRTLAMAAYADLDVSVIDEMPPGRTPVQTNVLSAERRPELVERIR 487

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVV---------------ERFNSLHEHFTS-SIAI 520
           +  ++G++ YW+C  I+E +     +                   + +L        + +
Sbjct: 488 LACAQGRQVYWVCTLIDESQTEAEHAPHSSNDIGPRSEVQAAQATYEALSAQLPGVRVGL 547

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGRM   +K+  M +FK     +L+ATTVIEVG+DV +AS++IIENAE  GLAQLHQLR
Sbjct: 548 VHGRMKAAEKQRTMRAFKCNEIDVLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLR 607

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG  +SSC+LLY PPLS  +  RL +++ T DGF IAE+DL+ R  GE+LG +Q+G
Sbjct: 608 GRVGRGSVVSSCVLLYQPPLSMLARQRLQIMRQTNDGFAIAEKDLELRGPGELLGTRQTG 667

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           +  F +A       LL      A  +L + P L 
Sbjct: 668 LAAFRVADLARDAHLLPRVYSLANMLLDESPQLA 701


>gi|169335590|ref|ZP_02862783.1| hypothetical protein ANASTE_02005 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258328|gb|EDS72294.1| hypothetical protein ANASTE_02005 [Anaerofustis stercorihominis DSM
           17244]
          Length = 675

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 224/664 (33%), Positives = 341/664 (51%), Gaps = 20/664 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           LS  +GVG+K    L+ +            DLL Y+P ++        IS++       +
Sbjct: 5   LSDLKGVGEKKEQALNSM------GIYTLEDLLDYYPRTYEVVGDITSISKVRPGTKALV 58

Query: 73  TGYISQ--HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
                +   +    +  +  KI            FF      + + F +  +  + GK++
Sbjct: 59  KCTFLEALKTRIVRKNLKITKIKFLSEGSIFYATFFNN--PYIYSYFKKDVEYKLYGKVE 116

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG--LSVDLFKKIIVEALSRLPVLPEW 188
           +  N + +V P Y            +  +Y L     L+   FKK I+ AL+++ ++ ++
Sbjct: 117 RNGNYLEIVSPKYSKLEDNVSIKNGLNPIYPLSAKNKLTNKDFKKFILSALTKIDII-DY 175

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           I  D+ ++    S+ EA+  IH P+  +D   T  A ER+ +DE     ++++L +    
Sbjct: 176 IPYDIKKEYGLISLDEAYKNIHEPKTLED---TLKANERMTFDEFCGFNLSIILNKNLNL 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            + G    V  K   K +  +PF  T SQ   I +I +D+    +M R++QGDVGSGKT+
Sbjct: 233 GKKGEIFEVINK--DKFMNLLPFKLTPSQNKVISEIEEDLMSGVKMNRLVQGDVGSGKTI 290

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL ++  A+  G QA   AP  ILA QH+E IK+      + VE++   M    +R+A 
Sbjct: 291 VALYSIYLAITNGYQAAFCAPTKILAMQHFESIKEIFDKLDVNVELLHSKMTAKEKREAY 350

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           ERI  G++ II+GTHA+F   ++Y  L L ++DEQHRFGV QR  L +K  + H L+M+A
Sbjct: 351 ERIESGESKIIVGTHAVFSTKVKYNNLGLAVIDEQHRFGVAQRGFLDKKGESVHTLVMSA 410

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL L+   D+D+S I +KP  RK IKT     +  D +       +++  + Y +
Sbjct: 411 TPIPRTLTLSIYKDLDVSIIDKKPGNRKEIKTYFKDYSYYDRIYRFALKEIAKKNQVYVV 470

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           CP I +  +        +          + A+IHG+M + +KE +M+ F  G    LIAT
Sbjct: 471 CPSI-DSDDLEAAEKTYKKLKKTYFKNVNAALIHGKMDEEEKEKIMEDFYKGEISALIAT 529

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           +VIEVGID  DA++IIIE A+ FGLA LHQLRGRVGR ++ S CILL   P SK S  RL
Sbjct: 530 SVIEVGIDSKDATLIIIEGADRFGLASLHQLRGRVGRNDKDSYCILLSENP-SKKSIERL 588

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           + L    DGF IA  DLK R  G+ILG +QSG   + I +   +  L   ++     IL 
Sbjct: 589 NFLSKNNDGFEIALFDLKTRGSGDILGYRQSGKGGYNIYKLIENSELFNKSKMAMDKILN 648

Query: 669 QDPD 672
            D +
Sbjct: 649 DDNE 652


>gi|28199580|ref|NP_779894.1| ATP-dependent DNA helicase [Xylella fastidiosa Temecula1]
 gi|182682315|ref|YP_001830475.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa M23]
 gi|28057695|gb|AAO29543.1| ATP-dependent DNA helicase [Xylella fastidiosa Temecula1]
 gi|182632425|gb|ACB93201.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa M23]
 gi|307578592|gb|ADN62561.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 718

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 232/694 (33%), Positives = 362/694 (52%), Gaps = 39/694 (5%)

Query: 11  APLSTFRGVGKKYSLF-LSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
           APLS    VG   +    ++ I                    + DR     I+E+ +   
Sbjct: 17  APLSVLPRVGPVLAGKCAARGIFTLQDLWLLLP-------LRYEDRTRLTPIAELQDGVA 69

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDG-TGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           V I   +        + R   +++L+D     +T+ FF+ +   +   F  G ++   G 
Sbjct: 70  VQIEARVEAVER-SFRYRPLLRVVLSDDAHHILTMRFFHFRAAQIAR-FTVGTRVRAYGV 127

Query: 129 IKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
            K  +    +VHP Y I    + V+    ++ VY +  G+   + +++I EAL  LP   
Sbjct: 128 PKLGQYGWEIVHPSYRILAPGEAVSLNDCLDPVYPVIDGVGPAIVRQLIREALEHLPTDA 187

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIAL 240
             E +    L     P++  A  I+H P    D       T PA++RL+ +ELL+ Q++L
Sbjct: 188 ALELLPDVWLSDLGLPTLRTALLIMHRPPLDADIARLMVGTHPAQQRLSLEELLSHQLSL 247

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
              R   ++     +     +   +L  +PF  T +Q+     I  D+++   MLR++QG
Sbjct: 248 RRQRIALQRHSAPALPDGAALVASLLHALPFHLTAAQQRVFAQIAADVAKPVPMLRLVQG 307

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A   AVE   Q  + AP  +LA+QH+  ++ + +   + V  +   + 
Sbjct: 308 DVGSGKTVVAALAALLAVEQNKQVALAAPTALLAEQHFINLRDWLEPLGVRVYWLAAKVT 367

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R +AL  +A G A +++GTHAL Q+S+ ++ L L IVDEQHRFGV QRL L  K   
Sbjct: 368 GKARLQALNDVASGDAQVVVGTHALMQESVVFHDLALTIVDEQHRFGVHQRLLLRDKGAT 427

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL + +  D+D+S I E P GR P++T ++   R  E++ER++
Sbjct: 428 DGIVPHQLVMTATPIPRTLAMAAYADLDVSVIDEMPPGRTPVQTNVLSAERRPELVERIR 487

Query: 477 VVLSEGKKAYWICPQIEEKKES---------------NFRSVVERFNSLHEHFTS-SIAI 520
           +  ++G++ YW+C  I+E +                   ++    + +L        + +
Sbjct: 488 LACAQGRQVYWVCTLIDESQTEAEQAPPSSNDIGHRSEVQAAQATYEALSAQLPGVRVGL 547

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGRM   +K+  M +FK     +L+ATTVIEVG+DV +AS++IIENAE  GLAQLHQLR
Sbjct: 548 VHGRMKAAEKQRTMRAFKCNEIDVLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLR 607

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG  +SSC+LLY PPLS  +  RL +++ T DGF IAE+DL+ R  GE+LG +Q+G
Sbjct: 608 GRVGRGSVVSSCVLLYQPPLSMLARQRLQIMRQTNDGFAIAEKDLELRGPGELLGTRQTG 667

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           +  F +A       LL      A  +L + P L 
Sbjct: 668 LAAFRVADLARDAHLLPRVYSLANMLLDESPQLA 701


>gi|157825974|ref|YP_001493694.1| ATP-dependent DNA helicase RecG [Rickettsia akari str. Hartford]
 gi|157799932|gb|ABV75186.1| ATP-dependent DNA helicase RecG [Rickettsia akari str. Hartford]
          Length = 743

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 257/719 (35%), Positives = 382/719 (53%), Gaps = 75/719 (10%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+ + TF  + +     L ++            DLLFY P S+ ++   P ++E+ +  
Sbjct: 9   LFSSIKTFINIREDTVYALKRL------GINNIRDLLFYLPVSYKNKILWPNLTEVRDGE 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+     + +  +   +  +P KI  +  TG + L+FF++    + N    G K  ++GK
Sbjct: 63  IIQTE-IVIESVNLPKKSNQPLKITASHDTGSLLLVFFHKPPPFIFNKLKVGTKHIISGK 121

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV---- 184
           ++   + + + HP +I +         IE +YSL   LS       I++A+         
Sbjct: 122 VQFFDHYLQISHPEFITNPKLAKE---IEPIYSLTYLLSNKQLYSYIIKAIEIFEEKCKV 178

Query: 185 -----LPEWIEKDLLQKKSFPSIAE------------AFNIIHNPRKAKDFEWTSPAR-- 225
                + E+++ ++LQ  +   + E            +      PR ++       +R  
Sbjct: 179 VEDKEVKEYLD-EILQSLNVLHVREVVIQLLDHGINKSIKKDWIPRSSRGMTQDKSSRYD 237

Query: 226 -----ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
                ++LA  EL+A QI+L  +R Q  +  G        I   IL  + F  T+ Q+  
Sbjct: 238 TESFKKQLAAKELIANQISLFNVRTQMSRRQGNIYMKAAAIQANILNELGFELTQYQKQV 297

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I++I  + S K  M+++LQGDVGSGKTLVAL+ +   V+AG QA +MAP  +LA QHYEF
Sbjct: 298 IEEIEFEQSDKVEMMKLLQGDVGSGKTLVALLTIVNVVKAGFQATLMAPTDLLANQHYEF 357

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
             K  +NT I + ++TG +  A R+  ++++ +G+  I++GTHALFQ+ + + KL  +++
Sbjct: 358 CVKALKNTNIRIALLTGKILGAARKNIMQQLKNGEIDILVGTHALFQEKVSFKKLGYIVI 417

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQHRFGVQQRL L  K   P VL+MTATPIPR+L LT  GD+ ISK+  KP  R PI T
Sbjct: 418 DEQHRFGVQQRLNLINKGLNPDVLVMTATPIPRSLALTMFGDMSISKLMGKPKNRLPIAT 477

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE--------------- 505
             + +N+I+ +IE +   L  G++ YWICP +E+    +    ++               
Sbjct: 478 NTMSVNKIEHIIESINKKLIAGERVYWICPLVEQSPSHDVIPRLDPGIQKKIKKDWILCR 537

Query: 506 --------------------RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
                               RFNS+   +     IIHG+M +  KE +M  FK G  K+L
Sbjct: 538 SHGMTMEEEQEDSLLMDVINRFNSIENIYQGYTGIIHGKMKNEQKEQIMKQFKAGEIKIL 597

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNS 604
           +ATTVIEVGIDV +A++IIIENAE FGLAQLHQLRGRVGRG   S CILLY+P  L K +
Sbjct: 598 VATTVIEVGIDVPEATLIIIENAERFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLGKVA 657

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
             R  ++K T DGF IAE+DLK R  GE+LG+KQSG  +F  A       LL  A K A
Sbjct: 658 RGRFEIMKQTNDGFYIAEQDLKLRGSGEVLGVKQSGEMEFFFADLAEDYDLLLKAHKFA 716


>gi|269123878|ref|YP_003306455.1| ATP-dependent DNA helicase RecG [Streptobacillus moniliformis DSM
           12112]
 gi|268315204|gb|ACZ01578.1| ATP-dependent DNA helicase RecG [Streptobacillus moniliformis DSM
           12112]
          Length = 689

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/666 (34%), Positives = 375/666 (56%), Gaps = 19/666 (2%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
           SKI            DL+++ P ++ ++     ISE+ +   V I G +   ++    K+
Sbjct: 24  SKIKALKKLGIHSLYDLVYFFPRTYENKAKHKPISELIDGENVIIEGKVLIINNAFFGKK 83

Query: 88  RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN 147
           +  K+L  DG G I L++F   +  +  V   G ++ +TGKI+K +N + +++P Y   N
Sbjct: 84  KLIKVLFTDGEGLIELVWFN--SPYILRVLEVGMELRITGKIRKSRN-LQIINPSYSKIN 140

Query: 148 SQDVNF-----PLIEAVYSLPTGLSVDLFKKIIVEALS-RLPVLPEWIEKDLLQKKSFPS 201
           S + N        +++VYSL +G+     KKI+ E L   L +  E + +  + +    S
Sbjct: 141 SSNRNIVLNEEDKLDSVYSLSSGIDQKNMKKIVEEVLKKYLFLFEENLPQKYIVENKLIS 200

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEG 259
             EA   IH PR    +E     ++R+ ++E L  ++ +L  R  +  K      ++   
Sbjct: 201 RTEAIANIHFPRNNFMYEEA---KKRILFEEALILEMKILKNRYNENIKNYNLYFLDDNK 257

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + +K +  + F  TK Q+  I +I ++++    + R++QGDVGSGKT+++LI +    E
Sbjct: 258 DLVKKYVSGLSFELTKDQKKIIAEIYKELNNGKIINRLIQGDVGSGKTIISLILLLYMAE 317

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q VIMAP  ILA QHY  + K      I VE++TG+     + +  + + +G  +I 
Sbjct: 318 NNYQGVIMAPTEILATQHYLEVVKEFDKLNIRVELLTGSTRAKKKEEIYKNVENGNINIS 377

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           IGTH+L +D++++  L L+I+DEQH+FGV QR K+  K    ++++MTATPIPR+L LT 
Sbjct: 378 IGTHSLLEDNLKFNNLGLIIIDEQHKFGVDQRNKIRDKGIYSNLIVMTATPIPRSLALTI 437

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKVVLSEGKKAYWICPQIEEKKES 498
            GD+D+S +T  P GRKPIKT  I     +  + E +   + EG++ Y + P I +  + 
Sbjct: 438 YGDLDVSLLTTMPLGRKPIKTKWIKNKEEENSMYEFIDKKIKEGRQVYVVSPLIVQSDKL 497

Query: 499 NFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           N  S VE +    E F   ++ ++HG++   +KE++M+ FK G   +L++TTV+EVG++V
Sbjct: 498 NISSAVETYEKYCEKFPQYTVGLLHGKIKSKEKENIMNEFKEGRIDILVSTTVVEVGVNV 557

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            ++SII+I N+E FGL+ LHQLRGRVGRGE  S C LL     ++ S  RL V++ T DG
Sbjct: 558 PNSSIIVILNSERFGLSSLHQLRGRVGRGEHSSYCFLLSETQ-NEISQKRLQVMEETLDG 616

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           F IAEEDLK R  GEI GIKQSG+ +  +        ++  A+K ++  L  D +L  ++
Sbjct: 617 FKIAEEDLKLRDTGEIFGIKQSGISELKLLDIVNDIQVILNAKKFSEEYL--DKNLGLIK 674

Query: 678 GQSIRI 683
            + ++I
Sbjct: 675 DKILKI 680


>gi|251779934|ref|ZP_04822854.1| ATP-dependent DNA helicase RecG [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084249|gb|EES50139.1| ATP-dependent DNA helicase RecG [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 677

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 228/666 (34%), Positives = 356/666 (53%), Gaps = 20/666 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +++ +S+ +GVG K +  L+K            +DLL Y P  +          +I+ + 
Sbjct: 3   IYSEISSLKGVGPKLTEKLNK------CGIFNILDLLLYFPRDYEFIDSNILFEDINGDE 56

Query: 69  IVTITGYISQHS-SFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              +   + +     + +  +    I       ++   +F +K   +KN F+  +   + 
Sbjct: 57  NQILRCKVIRIKGDIKTKTGKILTTIEFEYNGHKVYGKWFNQK--YIKNTFYNNKVYNLM 114

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK K++   + + +P  +   + D +   I   Y L   +S  + +K+I   +  + ++ 
Sbjct: 115 GKFKRIGKTLEVANPTVVCEEALDNS---ILPKYPLKGDISNKIIEKLINLVIDSI-IIK 170

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +  D+L K +  S+ +A   IH P+     E       RL + EL    + LLL++ +
Sbjct: 171 ENLPLDMLNKYNLVSLNDAIRSIHFPKNKDLLEKAII---RLKFQELFTYSLKLLLVKHK 227

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
             K             +++  +IP+S T +Q   +++IL+D   +  M R++QGDVGSGK
Sbjct: 228 LNKNKNGIYFEWNNELKRLKDSIPYSLTNAQTKVVREILRDQKSQKPMNRLVQGDVGSGK 287

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VALI++   ++ G Q   MAP  ILA QHYE  K   Q+  I VEI+TG+     +++
Sbjct: 288 TIVALISIFNVIKNGYQCAFMAPTEILANQHYEESKNLFQDFNIDVEILTGSTSLKEKKR 347

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E+I      ++IGTH LFQD + + +L L+I DEQHRFGV+QR KL  K      L+M
Sbjct: 348 IKEKIKQENPMLLIGTHTLFQDDVVFNRLGLIITDEQHRFGVEQRSKLINKGKKADCLVM 407

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L    D+D+S I E P GRK I T     +  D   E     ++ G++ Y
Sbjct: 408 TATPIPRTLALYLYSDLDVSIIDELPPGRKKIDTRFYQEHNRDIGYEIALEEINNGRQVY 467

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIA--IIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP I+E ++    SV   +  L       I   I+HG+M   +K+  ++ FKN   K+
Sbjct: 468 IVCPLIDEDEKEELNSVETLYTKLKNGIYKDIGVEILHGKMKSSEKQDKINRFKNNEFKV 527

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LI+TTVIEVG++V +AS++IIENAE FGLAQLHQLRGRVGRGE  S CIL+     S  +
Sbjct: 528 LISTTVIEVGVNVPNASVMIIENAERFGLAQLHQLRGRVGRGEYASYCILIAKAK-SNIT 586

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R++++  + DGFLI+EEDLK R  GE+ G KQSG  +F++A      S+L  A+ +A 
Sbjct: 587 KKRMTIMTESTDGFLISEEDLKLRGSGEMFGRKQSGDAEFILADLYEDISILRAAKHEAM 646

Query: 665 HILTQD 670
            +L  D
Sbjct: 647 EMLHND 652


>gi|206602183|gb|EDZ38665.1| Putative ATP-dependent DNA helicase (RecG) [Leptospirillum sp.
           Group II '5-way CG']
          Length = 713

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 223/683 (32%), Positives = 358/683 (52%), Gaps = 34/683 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PL     +GKK +  L        A     +DLL+  P  + DR   P I ++   +
Sbjct: 8   LVSPLHVVPDIGKKRAEKLE------LAGYRTVLDLLYCFPFRYEDRRAAPSIRQLVTGK 61

Query: 69  IVTITGYISQHSSFQLQKRRPYKILL-----NDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
               +G++++    + +  R +++ +      DG+GE+  ++F    E L      G   
Sbjct: 62  P---SGFVARVRDIRKKALRNFRVPVIEADLEDGSGEVRAVWF--GQEYLLKTLPPGSMG 116

Query: 124 TVTGK--IKKLKNRIIMVHPHYIFHNSQDVNFP-----LIEAVYSLPTGLSVDLFKKIIV 176
              GK  I      + +  P     + +           I  VY    GLS   F+K I 
Sbjct: 117 FFYGKPEISAYDGLLTLRSPVVEKMDEEKKGQKSFHVNRIVPVYHESHGLSSSFFRKTIG 176

Query: 177 EALSRLPVLP-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAK---DFE----WTSPARERL 228
             L+ L     E +   +L          A   +H PR      D +       P R R 
Sbjct: 177 IVLTSLWGNGFEPLPHSVLTSLGIMGWFPAIVGMHFPRTPPVEGDIDSLLLPEYPPRRRF 236

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK-ILRNIPFSPTKSQESAIKDILQD 287
            ++EL   +  +   +K+ +           + A+     ++P++ T++Q+ A ++I  D
Sbjct: 237 IFEELFFLEFLMGFKKKEIRLSSRSRNRQTPESAETAFRESLPYALTEAQKRACREIASD 296

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           MS+ + M R+L GDVGSGKT+VA   +  +   G Q+ +MAP  +LAQQHY  +    + 
Sbjct: 297 MSKPSPMNRLLLGDVGSGKTVVAAWGVYLSFCGGMQSALMAPTEVLAQQHYASLTSLLKP 356

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             I   ++T ++ ++ +R  +E +  G    ++GTHAL QD++ +  L  ++VDEQH+FG
Sbjct: 357 HGIRTALLTQSVKKSEKRTLMEAVHRGDVDFVVGTHALIQDALVFSSLGYIVVDEQHKFG 416

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           V+QR  L QK   P VL+MTATPIPR+L L+  GD+D+S + E+P GR+P+KT I+  NR
Sbjct: 417 VEQRKTLIQKGENPDVLVMTATPIPRSLALSYFGDLDLSVLDERPPGRQPVKTDIVAKNR 476

Query: 468 IDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            +    E +   L  G++ + + P IEE +E N R     F +L + + S +  ++ G+M
Sbjct: 477 RECFWDESVAPALDRGEQVFVVYPLIEESEEENIRDATSMFGTLSQKWPSVATGLLTGKM 536

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +K +VM++F++G  +LL++TTV+EVG+D+  A+++++ENAE FGLAQLHQLRGRVGR
Sbjct: 537 PWEEKAAVMEAFRSGKIRLLVSTTVVEVGVDIPGATVMVVENAERFGLAQLHQLRGRVGR 596

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
           G    +C L+  P  S+ S  RL +L  TEDGF +AEEDL+ R  GE +G +QSG+P F 
Sbjct: 597 GSLPGTCYLIPGPDASRESAGRLEILAQTEDGFQVAEEDLRLRGPGEFIGTRQSGLPMFQ 656

Query: 646 IAQPELHDSLLEIARKDAKHILT 668
           +A       +L +AR+ A   L 
Sbjct: 657 VASLVRDVDILLLAREQASMFLE 679


>gi|330466258|ref|YP_004404001.1| ATP-dependent DNA helicase RecG [Verrucosispora maris AB-18-032]
 gi|328809229|gb|AEB43401.1| ATP-dependent DNA helicase RecG [Verrucosispora maris AB-18-032]
          Length = 734

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 220/714 (30%), Positives = 358/714 (50%), Gaps = 59/714 (8%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL     VG+K +  L+  ++   A      DL+++ P  + +R     I  +    
Sbjct: 8   LDTPLKKL--VGEKTAKALAGHLDLHTAG-----DLMYHFPRRYDERGEHTDIRALDVGE 60

Query: 69  IVTITGYISQHSSFQLQKRRP--YKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITV 125
            VT+   + + +   +++RR    ++ + DG+G  +TL FF       +     GR    
Sbjct: 61  QVTVLAQVQRTAVRPMRQRRGNLLEVTVGDGSGGTLTLTFFG-NQAWRERELRPGRWGLF 119

Query: 126 TGKIKKLKNRIIMVHPHYIFH----NSQDVNFPLIE-------AVYSLPTGLSVDLFKKI 174
            GK+   + +  +  P Y+      + +      IE        VY     +   +  + 
Sbjct: 120 AGKVTDFRGKRQLNGPEYVLLGDRTDGEAAATEQIEEFAGALIPVYPAAAAVPTWVIARC 179

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           +   L  +    + +  D+   ++   +  A   IH P   ++      AR RL +DE  
Sbjct: 180 VRVVLDTVAPPEDPLPADVRASRNLVGLGGALREIHRPSSREEL---YRARRRLKWDEAF 236

Query: 235 AGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           A Q+ L+  + Q             G +       +P+  T  Q     +I  D+++++ 
Sbjct: 237 AVQLTLVRRKHQAAASPARARPARAGGLLDAFDARLPYELTGGQRDVGAEIAADLARRHP 296

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-----------K 342
           M R+LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LA QHY  +           +
Sbjct: 297 MHRLLQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHYRGMLDLLGPLAQAGE 356

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
                    VE++TG++  A RR+AL  +A G A I++GTHAL  + + +  L LV+VDE
Sbjct: 357 LGAAEHATRVELVTGSLGAAARRRALAEVASGAAGIVLGTHALLYEGVDFADLGLVVVDE 416

Query: 403 QHRFGVQQRLKLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           QHRFGV+QR  L  KA  P HVL+MTATPIPRT+ +T  GD++IS +++ P GR PI + 
Sbjct: 417 QHRFGVEQRDALRAKAEQPPHVLVMTATPIPRTVAMTVYGDLEISTLSQLPRGRSPIASH 476

Query: 462 IIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           ++P       +D    RL+  ++ G +AY +CP+I +             ++      + 
Sbjct: 477 VVPAAEKPAFLDRAWRRLREEVANGHQAYVVCPRIGDSTTGAEEEPPAVDDTGRRPPLAV 536

Query: 517 ---------------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
                           I ++HGR+   +K++VM SF NG   +L+ATTV+EVG+DV +A+
Sbjct: 537 TEVAPLLADGPLHGLRIGVLHGRLPADEKDAVMRSFANGELDVLVATTVVEVGVDVPNAT 596

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
           ++++ +A+ FG++QLHQLRGRVGRG     C+L+       ++  RL  + +T DGF +A
Sbjct: 597 MMVVLDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEATEGTSARERLDAVASTTDGFKLA 656

Query: 622 EEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           E DL+QR+EG++LG  QSG      +        L+  AR +A  ++ +DPDLT
Sbjct: 657 ELDLEQRREGDVLGAAQSGRRSHLRLLSLLRDADLIRDARAEAITLVEEDPDLT 710


>gi|257462680|ref|ZP_05627089.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D12]
 gi|317060328|ref|ZP_07924813.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D12]
 gi|313686004|gb|EFS22839.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D12]
          Length = 680

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 217/649 (33%), Positives = 345/649 (53%), Gaps = 13/649 (2%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH-SSFQLQK 86
            K             DLL+  P ++ +R     I+E+ +E    +   +    ++     
Sbjct: 15  KKYKGLKTLGIVTVHDLLYSFPRAYDNRSNLKTIAELHQEEYAVLHAKLLHVYTTPTRSG 74

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFH 146
           +R  K   +DG+G I +L+F      L+       +    G +K+      M +P +   
Sbjct: 75  KRMTKATASDGSGLIEILWF--GMPYLQKSLKLQEEYIFIGTVKRSMGTFQMTNPEFKLS 132

Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEA 205
             Q +    I  +YS    LS + F+K + E LS     L E I ++L QK       +A
Sbjct: 133 KGQKMQ-GEILPIYSTHKNLSQNRFRKYMREVLSLTESSLAENIPEELCQKYKILERKQA 191

Query: 206 FNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK--EIGIPINVEGKIAQ 263
              IH P   K  E     + R A +ELL  ++ +L  R            +  E  + +
Sbjct: 192 LWEIHFPSSEKTLEEA---KRRFAIEELLIIEMGILKNRFLTDSLASPLYHLKGEKTLVR 248

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           + L ++PF  T++Q+  I +I +D+ Q   + R++QGDVGSGKT+VA+I +   +E G Q
Sbjct: 249 QYLDSLPFPLTRAQKKVITEIYKDLEQGRIVNRLVQGDVGSGKTIVAMILLLYMIENGYQ 308

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
              MAP  ILA QHY  +    +   + VE++TG++    R + L  +  G+  ++IGTH
Sbjct: 309 GAFMAPTEILATQHYLGVSSKMKELGLRVELLTGSIRGKKRNELLTALGEGKIDLLIGTH 368

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
           AL ++ + +++L  +++DEQHRFGV QR KL +K    ++L+MTATPIPR+L L+  GD+
Sbjct: 369 ALLEEEVSFHQLGFIVIDEQHRFGVLQRQKLREKGILTNLLVMTATPIPRSLALSIYGDL 428

Query: 444 DISKITEKPAGRKPIKTVII-PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           D+S + E P GR PIKT  I     ++++   ++  L +G++AY++ P IEE  +    S
Sbjct: 429 DVSILDELPPGRSPIKTKWIASEEEMEKMYSFIRKQLQQGRQAYFVAPLIEESDKLVLHS 488

Query: 503 VVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           ++E    + E     +I+I+HGRM   +KE +M  F+     +L++TTVIEVGIDV +A 
Sbjct: 489 ILEVEKKIREKLSDYNISILHGRMKSAEKEEIMRQFQQKEIDILVSTTVIEVGIDVPNAV 548

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
           I+ I NAE FGL+ LHQLRGRVGRG   S C L+     +++S  RL +++ T+DGF+IA
Sbjct: 549 IMTILNAERFGLSALHQLRGRVGRGNSASFCFLISKTQ-NESSKQRLKIMEATQDGFVIA 607

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           EEDLK R  GEI G++QSG+              +++ R +    L + 
Sbjct: 608 EEDLKMRNAGEIFGLRQSGLSDLRFINLLHDVKTIKLVRDECMAYLRKY 656


>gi|257453021|ref|ZP_05618320.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 3_1_5R]
 gi|317059561|ref|ZP_07924046.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 3_1_5R]
 gi|313685237|gb|EFS22072.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 3_1_5R]
          Length = 679

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/648 (34%), Positives = 356/648 (54%), Gaps = 12/648 (1%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ-K 86
            K             DLL+Y P ++ +R    KI+E+  E    I   +    S   +  
Sbjct: 15  KKYKGLKALGIKTVHDLLYYFPRAYDNRSNIKKIAELRMEEYAVIHAKLLHVYSAPTKLG 74

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFH 146
           R+  K    DG+G + +++F      L+       +    G +K+      M +P +   
Sbjct: 75  RKMTKATATDGSGFLEIVWF--GMPYLQKSLKLQEEYIFVGTVKRAMGAFQMTNPEFKLS 132

Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
             Q +    I  +YS    LS +  +K + E L    +L E I K++ QK +     +A 
Sbjct: 133 KGQKMR-GEILPIYSSHKNLSQNRLRKYLKEILFENSLLSENIPKEICQKYNILGRNQAL 191

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQK 264
           + IH P   K  E     + R A +ELL  ++ +L  R           ++EGK    ++
Sbjct: 192 SEIHFPSSEKILEEA---KRRFAIEELLIIEMGILKNRFLTDALTQAFYHLEGKKTLVKQ 248

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
            L ++PF  TK+Q+  I +I +D+ Q   + R++QGDVGSGKT+VA++ +   +E G Q 
Sbjct: 249 YLSSLPFQLTKAQKKVITEIYKDLEQGRIVNRLVQGDVGSGKTMVAMVLLLYMIENGYQG 308

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  ILA QHY  I    Q   + VE++TG++    RRK L+ +  G   ++IGTHA
Sbjct: 309 ALMAPTEILAIQHYLGIYSKMQELGLRVELLTGSIRGKKRRKLLDDLKEGNIDLLIGTHA 368

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           L ++ +++++L  +++DEQHRFGV QR KL +K    ++L+MTATPIPR+L L+  GD+D
Sbjct: 369 LLEEEVRFHQLGFIVIDEQHRFGVLQRKKLREKGILTNLLVMTATPIPRSLALSIYGDLD 428

Query: 445 ISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           +S + E P GR PIKT  I     ++++   ++  LS+GK+AY++ P IEE ++    S+
Sbjct: 429 VSILDELPPGRSPIKTKWISTKEDMEKMYAFIRKQLSQGKQAYFVAPLIEESEKLLLSSI 488

Query: 504 VERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +E    + E      IA++HGRM +I+K+ +M  FK     +L++TTVIEVGIDV +A I
Sbjct: 489 LEVEEEVKEKLPNYKIALLHGRMKNIEKDEIMQRFKQREIDILVSTTVIEVGIDVPNAVI 548

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           + I NAE FGL+ LHQLRGRVGRG++ S C L+     ++ S  RL +++ T+DGF+IAE
Sbjct: 549 MTILNAERFGLSALHQLRGRVGRGKDASFCFLISKTQ-NETSKQRLEIMEATQDGFIIAE 607

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           EDLK R  GEI G++QSG+              +++ R +    L ++
Sbjct: 608 EDLKLRNAGEIFGLRQSGLSDLRFIDLLHDVKTIKLVRDECMEYLRKN 655


>gi|170730951|ref|YP_001776384.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa M12]
 gi|167965744|gb|ACA12754.1| ATP-dependent DNA helicase [Xylella fastidiosa M12]
          Length = 718

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 233/694 (33%), Positives = 363/694 (52%), Gaps = 39/694 (5%)

Query: 11  APLSTFRGVGKKYSLF-LSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
           APLS    VG   +    ++ I                    + DR     I+E+ +   
Sbjct: 17  APLSVLPRVGPVLAGKCAARGIFTLQDLWLLLP-------LRYEDRTRLTPIAELQDGVA 69

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDG-TGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           V I   +        + R   +++L+D     +T+ FF+ +   +   F  G ++   G 
Sbjct: 70  VQIEARVEAVER-SFRYRPLLRVVLSDDAHHILTMRFFHFRAAQIAR-FTVGTRVRAYGV 127

Query: 129 IKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLP--V 184
            K  +    +VHP Y I    + V+    ++ VY +  G+   + +++I EAL  LP   
Sbjct: 128 PKLGQYGWEIVHPSYRILAPGEAVSLNDCLDPVYPVIDGVGPAIVRQLIREALEHLPTDA 187

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIAL 240
           + E +    L     P++  A  I+H P    D       T PA++RL+ +ELLA Q++L
Sbjct: 188 VLELLPDVWLSDLGLPTLRTALLIMHRPPLDADIARLMVGTHPAQQRLSLEELLAHQLSL 247

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
              R   ++     +     +   +L  +PF  T +Q+     I  D+++   MLR++QG
Sbjct: 248 RRQRIALQRHSAPALPDGAALVASLLHALPFHLTAAQQRVFAQIAADVAKPVPMLRLVQG 307

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A   AVE   Q  + AP  +LA+QH+  ++ + +   + V  +   + 
Sbjct: 308 DVGSGKTVVAALAALLAVEQNKQVALAAPTALLAEQHFINLRDWLEPLGVRVHWLAAKVT 367

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R +AL  +A G A +++GTHAL Q+S+ ++ L L IVDEQHRFGV QRL L  K   
Sbjct: 368 GKARLQALNDVASGDAQVVVGTHALMQESVVFHDLALTIVDEQHRFGVHQRLLLRDKGAI 427

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL + +  D+D+S I E P GR P++T ++   R  E++ER++
Sbjct: 428 AGIVPHQLVMTATPIPRTLAMAAYADLDVSVIDEMPPGRTPVQTNVLSAERRPELVERIR 487

Query: 477 VVLSEGKKAYWICPQIEEKKES---------------NFRSVVERFNSLHEHFTS-SIAI 520
           +  ++G++ YW+C  I+E +                   ++    + +L        + +
Sbjct: 488 LACAQGRQVYWVCTLIDESQTEAEQAPPSSNDIGHRSEVQAAQATYEALSAQLPGVRVGL 547

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGRM   +K+  M +FK     +L+ATTVIEVG+DV +AS++IIENAE  GLAQLHQLR
Sbjct: 548 VHGRMKAAEKQRTMRAFKYNEIDVLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLR 607

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG  +SSC+LLY PPLS  +  RL +++ T DGF IAE+DL+ R  GE+LG +Q+G
Sbjct: 608 GRVGRGSVVSSCVLLYQPPLSMLARQRLQIMRQTNDGFAIAEKDLELRGPGELLGTRQTG 667

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           +  F +A       LL      A  +L + P L 
Sbjct: 668 LAAFRVADLARDAHLLPRVYSLANVLLDESPQLA 701


>gi|325000473|ref|ZP_08121585.1| ATP-dependent DNA helicase RecG [Pseudonocardia sp. P1]
          Length = 721

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 214/711 (30%), Positives = 355/711 (49%), Gaps = 54/711 (7%)

Query: 14  STFRG-VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           S   G +G+K +  L+              DLL ++P  ++DR     I+ +      T+
Sbjct: 8   SRLDGPLGRKAAEALA------PLGLETVGDLLRHYPRRYVDRGRLTDIAGLVAGEHATV 61

Query: 73  TGYISQHSSFQLQKRR--PYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
              +++     ++ RR    K ++ D  G E+   FF      L+     G     +GK+
Sbjct: 62  VAQVAKAELRDMRNRRGKMLKAVIRDEKGGELDCTFFNG--WKLQGFVKAGAVGVFSGKV 119

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
                R+ + HP +   +  D   P + +VY     ++     + + + L ++    + +
Sbjct: 120 GVFNRRLQLTHPQFEEIDETDSLRPFL-SVYPANAKVTSQAIARSVRQVLDQIDDPTDPL 178

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              L +++    +  A   IH P    D      AR RL +DE L  Q+AL L R+    
Sbjct: 179 PDALREREQLTELGRALRRIHVPEAEADI---HAARHRLVWDEALGVQLALALRRQAAVA 235

Query: 250 EIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
                    EG +      ++PF  T  QE+  ++I  D+  ++ M R++QGDVG+GKT+
Sbjct: 236 RPAPVCPRTEGGLLAAFDADLPFPLTDGQEAVGEEIAADLGAEHPMNRLVQGDVGAGKTI 295

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-----------IVEIITG 357
           VAL AM   V+AG QA ++AP  +LA QH   ++                    + ++TG
Sbjct: 296 VALRAMLQVVDAGKQAAMLAPTEVLAAQHARSLRGMLGALGRAGELDATDGATSITLLTG 355

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           +M    RR+AL     G A I++GTHAL QD++ +  L LV+VDEQHRFGV+QR  L  +
Sbjct: 356 SMGVKARRQALLDAQSGAAGIVVGTHALIQDTVGFADLGLVVVDEQHRFGVEQRDALRAR 415

Query: 418 ATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVI 472
               PH+L+MTATPIPRT+ +T  GD+ +S++   P GR P+ T ++P++     I+ V 
Sbjct: 416 GERAPHMLVMTATPIPRTVAMTVYGDLAVSELKGLPRGRSPVTTTVVPLSEHPGWIERVW 475

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVV-----------------ERFNSLHEHFT 515
           +R++  +  G + Y +CP++ + ++ +                      +    + E   
Sbjct: 476 QRIREEVERGHQCYVVCPRVGDTEKEDPELEEPPPEEGESERRPPLAVLDIAPMITEKLG 535

Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              I I+HG++   +K++VM +F+     +L+ATTVIEVG+DV +A+ I++ +A+ FGL+
Sbjct: 536 GLRIGILHGKLPADEKDAVMRAFERAELDVLVATTVIEVGVDVPNATGIVLLDADRFGLS 595

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG     C+L+   P +  +  RL  +  T DGF +A  DL+ R+EG++L
Sbjct: 596 QLHQLRGRVGRGSAAGLCLLVTEMPAATTARERLDAVAGTTDGFELARLDLELRREGDVL 655

Query: 635 GIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           G  QSG      +     H  ++  A+  A+ ++ +DPDL       +R L
Sbjct: 656 GASQSGSRSGLKLLSLLRHGDVIAKAQLYARDLVDRDPDLGG--HPRLRDL 704


>gi|294782998|ref|ZP_06748322.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 1_1_41FAA]
 gi|294479876|gb|EFG27653.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 1_1_41FAA]
          Length = 690

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 219/642 (34%), Positives = 344/642 (53%), Gaps = 15/642 (2%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ-K 86
            +++N  +       DL++Y P ++ +R     I +++    V +   +    +   +  
Sbjct: 23  KQVLNLKSLGIDTIYDLIYYFPRAYDNRSNVKNIGDLTFNEYVVVKASVMSVLNMPNRSG 82

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFH 146
           ++  K ++ DGTG + +L+F      +      G +    G+ KK       ++P Y  +
Sbjct: 83  KKIVKAMVTDGTGIMEVLWF--GMPYISKSLKVGEEYIFIGQTKKSN-LFQFINPEYKLY 139

Query: 147 NSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFP-SIA 203
             Q+      I  +YS    ++ +  +KII + L   L    E I  DL++         
Sbjct: 140 KGQEKETAEEILPIYSSNKSITQNTLRKIIKKFLENFLKYFEENIPNDLVKGYKEIFERT 199

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG--KI 261
           +A   IH P   +  E  +    R A +ELL  ++ +L  R            +EG  + 
Sbjct: 200 QAIKNIHFPESVQAIEAANL---RFATEELLILELGILKNRFIIDSLNTKKYEIEGKKEK 256

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            +K L  +PF  T++Q+  IK+I  ++S    + R++QGDVGSGKT VA + +    E G
Sbjct: 257 VKKFLELLPFELTRAQKKVIKEIYDEISDGKIVNRLVQGDVGSGKTAVATVMLIYMAENG 316

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  +MAP  ILA QHY  +K+  +   + V ++T ++    + + LE I++G   I+IG
Sbjct: 317 YQGALMAPTEILANQHYLGMKERLEKIGLRVGLLTSSIKGKKKTEILEAISNGDIDIVIG 376

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH+L +D++ + KL L+++DEQHRFGV QR KL +K    ++L+MTATPIPR+L L+  G
Sbjct: 377 THSLIEDNVVFKKLGLIVIDEQHRFGVNQRNKLREKGFLGNLLVMTATPIPRSLALSIYG 436

Query: 442 DIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           D+D+S I E P GR PIKT  I  ++ +  + + +   ++ G +AY++ P IE   +   
Sbjct: 437 DLDLSIIDELPPGRTPIKTKWIANDKDLSIMYDFIYKKVNSGNQAYFVAPLIETSDKMAL 496

Query: 501 RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           +SV +    +   F    I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  
Sbjct: 497 KSVDKVSEEIERRFSDKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPA 556

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           ++I+ I NAE FGL+ LHQLRGRVGRG + S C L+     ++NS  RLS+++ TEDGF+
Sbjct: 557 STIMTIYNAERFGLSALHQLRGRVGRGSKQSYCFLI-SESTTENSKQRLSIMEKTEDGFI 615

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           IAEEDLK R  GEI G++QSG               ++  R 
Sbjct: 616 IAEEDLKLRNSGEIFGLRQSGFSDLKFIDIIYDSKTIKDVRD 657


>gi|159036815|ref|YP_001536068.1| ATP-dependent DNA helicase RecG [Salinispora arenicola CNS-205]
 gi|157915650|gb|ABV97077.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 733

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 220/737 (29%), Positives = 360/737 (48%), Gaps = 58/737 (7%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             PLS    VG K +  L+  ++   A      DL+++ P  + +R     I  +     
Sbjct: 9   DTPLSKL--VGAKTAKALATHLDLHTAG-----DLIYHVPRRYDERGEHTDIRSLDVGEQ 61

Query: 70  VTITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            T+   + + +   +++RR    ++ + DG+G    L F+      +     GR     G
Sbjct: 62  ATVLAQVQRTAVRPMRQRRGNLLEVTVGDGSGGALTLTFFGNQVWRERDLRPGRWGLFAG 121

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVN-----------FPLIEAVYSLPTGLSVDLFKKIIV 176
           K+ + + R  +  P Y+   + D                +  VY     +   +  + + 
Sbjct: 122 KVTEFRGRRQLNGPEYVLLGTGDEGEVAASEEVEEFAGALIPVYPAAAAVPTWVIARCVR 181

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
             L  +    + +   +   ++   +  A   IH P      E    AR RL +DE  A 
Sbjct: 182 VVLDTVDPPADPVPATVRTNRNLIGLGTALREIHRPSSK---EALYRARRRLKWDEAFAV 238

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ L+  ++Q       P   V G +       +P+  T  Q     +I  D++  + M 
Sbjct: 239 QLTLVQRKQQAADRPARPRPAVAGGLRDAFDARLPYQLTVGQRDVGIEIATDLATAHPMH 298

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI----- 350
           R+LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LA QH+  I              
Sbjct: 299 RLLQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHHRGILDLLGPLGRAGELD 358

Query: 351 ------IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                  VE++TG++  A RR+AL  +  G A I++GTHAL  + + +  L LV+VDEQH
Sbjct: 359 AVEHATRVELVTGSLGAAARRRALGEVRSGAAGIVLGTHALLYEGVDFADLGLVVVDEQH 418

Query: 405 RFGVQQRLKLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           RFGV+QR  L  KA  P HVL+MTATPIPRT+ +T  GD+++S +++ P GR PI + ++
Sbjct: 419 RFGVEQRDALRAKAEQPPHVLVMTATPIPRTVAMTVYGDLEVSTLSQLPRGRSPIASHVV 478

Query: 464 PINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--- 516
           P       +D    RL+  ++ G +AY +CP+I +   S+  +  E              
Sbjct: 479 PAAEKPAFLDRAWRRLREEVTAGHQAYVVCPRIGDGPGSDEEAAQEDDTGRRPPLAVTEV 538

Query: 517 ------------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
                        I ++HGR++  +K++VM SF  G   +L+ATTV+EVG+DV +A+++I
Sbjct: 539 APLLAEGPLHGLRIGVLHGRLAADEKDAVMRSFAAGDLDVLVATTVVEVGVDVPNATVMI 598

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           + +A+ FG++QLHQLRGRVGRG     C+L+       ++  RL  + +T DGF +AE D
Sbjct: 599 VLDADRFGVSQLHQLRGRVGRGAAPGLCLLVTEATEGTSARERLDAVGSTTDGFKLAELD 658

Query: 625 LKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+QR+EG++LG  QSG      +        L+  AR +A  ++ QDP+L   R  ++  
Sbjct: 659 LEQRREGDVLGATQSGRRSHLRLLSLLRDADLIRDARAEAIDLVEQDPELA--RHPALAA 716

Query: 684 LLYLYQYNEAFQFIRAG 700
            +      +  +++  G
Sbjct: 717 SVAALVDADRAEYLEKG 733


>gi|124515677|gb|EAY57186.1| putative ATP-dependent DNA helicase (RecG) [Leptospirillum rubarum]
          Length = 713

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 222/683 (32%), Positives = 357/683 (52%), Gaps = 34/683 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PL     +GKK +  L        A     +DLL+  P  + DR   P I ++   +
Sbjct: 8   LVSPLHVVPDIGKKRAEKLE------LAGYRTVLDLLYCFPFRYEDRRAAPSIRQLVTGK 61

Query: 69  IVTITGYISQHSSFQLQKRRPYKILL-----NDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
               +G++++    + +  R +++ +      DG+GE+  ++F    E L      G   
Sbjct: 62  P---SGFVARVRDIRKKALRNFRVPVIEADLEDGSGEVRAVWF--GQEYLLKTLPPGSMG 116

Query: 124 TVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFP-----LIEAVYSLPTGLSVDLFKKIIV 176
              GK +       + +  P     + +           I  VY    GLS   F+K I 
Sbjct: 117 FFYGKPEISDYDGLLTLRSPVVEKMDEEKKGQKSFHVNRIVPVYHESHGLSSSFFRKTIG 176

Query: 177 EALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK---DFE----WTSPARERL 228
             L+ L   + E +   +L          +   +H PR      D +       P R R 
Sbjct: 177 VVLTALWGNVFEPLPHAVLTSLGIMGWFPSIVGMHFPRTLPVEGDIDSLLLPEYPPRRRF 236

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK-ILRNIPFSPTKSQESAIKDILQD 287
            ++EL   +  +   +K+ +             A+     ++P+  T++Q+ A ++I  D
Sbjct: 237 IFEELFFLEFLMGYKKKEIRLSSRSRNRQTPDNAETAFSESLPYVLTEAQKRACREIASD 296

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           MS+ + M R+L GDVGSGKT+VA   +  +   G Q+ +MAP  +LAQQHY  I    + 
Sbjct: 297 MSKSSPMNRLLLGDVGSGKTVVAAWGVYLSFRGGMQSALMAPTEVLAQQHYASITSLLKP 356

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             I + ++T ++ ++ +R  +E +  G    ++GTHAL QD++ +  L  ++VDEQH+FG
Sbjct: 357 HGIRIALLTQSVKKSEKRALMEAVHRGDVDCVVGTHALIQDALVFSSLGYIVVDEQHKFG 416

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           V+QR  L QK   P VL+MTATPIPR+L L+  GD+D+S + E+P GR+P+KT I+  NR
Sbjct: 417 VEQRKTLIQKGENPDVLVMTATPIPRSLALSYFGDLDLSVLDERPPGRQPVKTEIVTKNR 476

Query: 468 IDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            +    E +   L  G++ + + P IEE +E N R     F  L + + S S  ++ G+M
Sbjct: 477 RECFWDESVAPALDRGEQVFVVYPLIEESQEENIRDATSMFAVLSQKWPSVSTGLLTGKM 536

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +K +VM++F++G  +LL++TTV+EVG+D+  A+++++ENAE FGLAQLHQLRGR+GR
Sbjct: 537 PWEEKAAVMEAFRSGKIRLLVSTTVVEVGVDIPGATVMVVENAERFGLAQLHQLRGRIGR 596

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
           G    +C L+  P  S+ S  RL +L  TEDGF +AEEDL+ R  GE +G +QSG+P F 
Sbjct: 597 GSLPGTCYLIPGPDASRESVGRLEILVRTEDGFTVAEEDLRLRGPGEFIGTRQSGLPMFQ 656

Query: 646 IAQPELHDSLLEIARKDAKHILT 668
           +A       +L +AR+ A   L 
Sbjct: 657 VASLVRDVDILLLAREQASMFLE 679


>gi|71898961|ref|ZP_00681127.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1]
 gi|71731207|gb|EAO33272.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1]
          Length = 718

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 234/694 (33%), Positives = 363/694 (52%), Gaps = 39/694 (5%)

Query: 11  APLSTFRGVGKKYSLF-LSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
           APLS    VG   +    ++ I                    + DR     I+E+ +   
Sbjct: 17  APLSVLPRVGPVLAGKCAARGIFTLQDLWLLLP-------LRYEDRTRLIPIAELQDGVA 69

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDG-TGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           V I   +        + R   +++L+D     +T+ FF+ +   +   F  G ++   G 
Sbjct: 70  VQIEARVEAVER-SFRYRPLLRVVLSDDAHHRLTMRFFHFRAAQIAR-FTVGTRVRAYGV 127

Query: 129 IKKLKNRIIMVHPHY-IFHNSQDVNFP-LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
            K  +    +VHP Y IF   + V+    ++ VY +  G+   + +++I EAL  LP   
Sbjct: 128 PKLGQYGWEIVHPSYRIFAPGEAVSLNDCLDPVYPVIDGVGPAIVRQLIREALEHLPTDA 187

Query: 187 --EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIAL 240
             E +    L     P++  A  I+H P    D       T PA++RL+ +ELLA Q++L
Sbjct: 188 ALELLPDVWLSDLGLPTLRTALLIMHRPPLDADIARLMVGTHPAQQRLSLEELLAHQLSL 247

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
              R   ++     +     +   +L  +PF  T +Q+     I  D+++   MLR++QG
Sbjct: 248 RRQRIALQRHSAPVLPDGAALVASLLHALPFHLTAAQQRVFAQIAADVAKPVPMLRLVQG 307

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA +A   AVE   Q  + AP  +LA+QH+  ++ + +   + V  +   + 
Sbjct: 308 DVGSGKTVVAALAALLAVEQNKQVALAAPTALLAEQHFINLRDWLEPLGVRVYWLAAKVT 367

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R +AL  +A G A +++GTHAL Q+S+ ++ L L IVDEQHRFGV QRL L  K   
Sbjct: 368 GKARLQALNDVASGDAQVVVGTHALMQESVVFHDLALTIVDEQHRFGVHQRLLLRDKGAT 427

Query: 421 ----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               PH L+MTATPIPRTL + +  D+D+S I E P GR P++T ++   R  E++ER++
Sbjct: 428 AGIVPHQLVMTATPIPRTLAMAAYADLDVSVIDEMPPGRTPVQTNVLSAERRPELVERIR 487

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVV---------------ERFNSLHEHFTS-SIAI 520
           +  ++G++ YW+C  I+E +    ++                   + +L        + +
Sbjct: 488 LACAQGRQVYWVCTLIDESQTEAEQAPHSSNDIGHRSEVQAAQATYEALSAQLPGVRVGL 547

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGRM   +K+  M +FK     +L+ATTVIEVG+DV +AS++IIENAE  GLAQLHQLR
Sbjct: 548 VHGRMKAAEKQRTMRAFKCNEIDVLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLR 607

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG  +SSC+LLY PPLS  +  RL +++ T DGF IAE+DL+ R  GE+LG +Q+G
Sbjct: 608 GRVGRGSVVSSCVLLYQPPLSMLARQRLQIMRQTNDGFAIAEKDLELRGPGELLGTRQTG 667

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           +  F +A       LL      A  +L + P L 
Sbjct: 668 LAAFRVADLARDAHLLPRVYSLANTLLDESPQLA 701


>gi|260437137|ref|ZP_05790953.1| ATP-dependent DNA helicase RecG [Butyrivibrio crossotus DSM 2876]
 gi|292810449|gb|EFF69654.1| ATP-dependent DNA helicase RecG [Butyrivibrio crossotus DSM 2876]
          Length = 677

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 215/676 (31%), Positives = 352/676 (52%), Gaps = 19/676 (2%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +   +G+G +       +      +     DL+  +P ++        I+ I E  I  +
Sbjct: 3   IRKLKGIGTRTEELFQHL------DVYTTKDLMELYPRAYDSYDEPVNIAAIDECGIYAV 56

Query: 73  TGYISQHSSFQLQKR-RPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
              + +    +   R +   +++ D  G  + + +F      L++    G +    GK+ 
Sbjct: 57  YAAVDRPPELKQNGRYKILTVMVRDEAGSMLRITWFN--MPFLRSRLRNGYRYIFRGKVA 114

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
              + + M  P     +   +    ++ VY L  GL+ ++  K + +         E++ 
Sbjct: 115 IKGSLVFMEQPSIYTVDEYYIRQSSMQPVYPLTAGLTNNMVIKAVKQCFES-GGYEEFLP 173

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           + +L K       +A   IH P   KD    + AR+R+ +DE       +   +     E
Sbjct: 174 EWILTKNDLIDEKKAHYAIHFP---KDRNELAQARKRIIFDEFFLFTTNIRCAKSARLNE 230

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             +    E   A  +L+N+P+S T +Q+    +IL DM     M R++QGDVGSGKT++A
Sbjct: 231 DNLYRISESGEALHVLKNLPYSLTGAQKKVYSEILNDMGSDKTMNRLIQGDVGSGKTILA 290

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK--YTQNTQIIVEIITGNMPQAHRRKAL 368
            +AM     AG Q+++MAP  +LA+QHYE +K+            ++TG + +A +R A 
Sbjct: 291 FLAMINTAAAGWQSILMAPTEVLARQHYEALKELIDKNRLDFTCVLLTGALTEAKKRDAK 350

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E+I  G+A  IIGTHAL  D +++    LVI DEQHRFGV+QR  L++K   PH+++M+A
Sbjct: 351 EKITSGEADFIIGTHALITDDVEFKNPALVITDEQHRFGVRQRENLSRKGETPHIIVMSA 410

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPR+L +   GD+DIS + EKPA R P+K  ++  +   +  + +   + +G +AY I
Sbjct: 411 TPIPRSLAIILYGDLDISIVDEKPADRLPVKNCVVDDSYRTKAYKFISDEIKKGHQAYII 470

Query: 489 CPQIEEKK-ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           C   EE   +SN  +VV+    L E      I  +HG+M   +K  +MD F      +L+
Sbjct: 471 CAMAEESDNDSNLENVVDFSKKLKEAMPETRIEYLHGKMKPAEKNRIMDEFAKRNTDILV 530

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVGI+V +A+++++ NAE FGLA LHQLRGRVGRG+E S CI   +   +K +  
Sbjct: 531 STTVVEVGINVPNATVMMVINAERFGLAGLHQLRGRVGRGKEQSYCIFESNTK-NKVTKE 589

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL++LK + DGF I+E+DLK R  G++LG +QSG   F I       S+L++A   +  +
Sbjct: 590 RLNILKESNDGFYISEQDLKLRGPGDMLGTRQSGDMGFAIGNIYSDASILKMAADTSSIL 649

Query: 667 LTQDPDLTSVRGQSIR 682
           + +D +L       IR
Sbjct: 650 IEKDKELMLEENSGIR 665


>gi|241889944|ref|ZP_04777242.1| ATP-dependent DNA helicase RecG [Gemella haemolysans ATCC 10379]
 gi|241863566|gb|EER67950.1| ATP-dependent DNA helicase RecG [Gemella haemolysans ATCC 10379]
          Length = 669

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 218/672 (32%), Positives = 356/672 (52%), Gaps = 30/672 (4%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            +N L   + T +GVGKKY   L+++            D+L+  P            S +
Sbjct: 1   MINILEKSVGTIKGVGKKYLQTLNEL------EIYTIRDILYNIPYRVS--SSTDFSSSV 52

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYK--ILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            +   V  TG +    S Q    R  +    L+  +G I ++FF +    LK    EG+ 
Sbjct: 53  KDNEKVITTGKVETRVSTQFYGNRRSRSFFTLSTSSGSIKIVFFNQ--HYLKKNLIEGKD 110

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           + V G      N I      +   + +      IE  Y L  G++   F K++ E+ + +
Sbjct: 111 VVVKGTYNAANNTITASSVSFNVVDEKPKGD-TIEVFYHLKQGITQKKFTKLVEESFNMI 169

Query: 183 P---VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
               V+ + + ++    K    + +    +H P+ +++F+    A++  A+ EL   Q+ 
Sbjct: 170 DGENVILDLVPENF---KGIWKLDKILYTLHYPKNSEEFD---KAKKMFAFHELFNYQLK 223

Query: 240 LLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L L     +       + +  K   +   ++PF  T +Q   I +I+ D++   +M R+L
Sbjct: 224 LQLQNINSRIENNRYCVGINNKDINEFKNSLPFMLTGAQSRVIDEIVDDLNNPYKMDRLL 283

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT VA   + A ++AG Q  IMAP  ILA QH+E   ++ ++  I V ++T +
Sbjct: 284 QGDVGSGKTAVAAATLYATIKAGYQTAIMAPTEILANQHFETFFEFFKDLNISVALLTSS 343

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
            P+  R   L  +  G+  ++IGTH+L Q+ +++  L  VI DEQHRFGV+QR  L+ K 
Sbjct: 344 TPKKDRNTILSLLEVGEIELLIGTHSLIQEDVKFNNLKYVITDEQHRFGVKQRQLLSNKG 403

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            A + L+MTATPIPR+L +T + DI +S I E PAGRK ++T         +V++ +++ 
Sbjct: 404 EAVNSLMMTATPIPRSLAITLITDIKVSTIDELPAGRKKVQTYKATNKSFYKVLDNIRME 463

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDS 536
           L  G++ Y +CP IEE ++ + ++V E + ++  +      IAI+HG+M++ +K+++++ 
Sbjct: 464 LDNGRQGYVVCPLIEESEKMDLQNVEETYENIKNYLPDDYKIAILHGKMNNKEKDAIVEK 523

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F N    +LI+TTVIEVG++V +A+ +II +A  FGLA LHQLRGRVGR +  S CIL+ 
Sbjct: 524 FLNKEIHILISTTVIEVGVNVPNATFMIIVDAHRFGLATLHQLRGRVGRSKFQSYCILVT 583

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
                     R+ ++    DGF IAE DLKQR  G+  G KQSG+P F +A       L+
Sbjct: 584 DSK-----SERIDIMCLENDGFKIAEFDLKQRGPGDFFGTKQSGVPSFKVADLINDVDLM 638

Query: 657 EIARKDAKHILT 668
            +A+K A  I+ 
Sbjct: 639 YLAKKLAVKIIE 650


>gi|157828759|ref|YP_001495001.1| ATP-dependent DNA helicase RecG [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933486|ref|YP_001650275.1| ATP-dependent DNA helicase [Rickettsia rickettsii str. Iowa]
 gi|157801240|gb|ABV76493.1| ATP-dependent DNA helicase RecG [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908573|gb|ABY72869.1| ATP-dependent DNA helicase [Rickettsia rickettsii str. Iowa]
          Length = 713

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 261/688 (37%), Positives = 376/688 (54%), Gaps = 43/688 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+ + TF  + +     L ++            DLLFY P S+ ++   P ++E+ +  
Sbjct: 9   LFSSVKTFINIREDTVSALKRL------GINNIRDLLFYLPVSYQNKILSPNLTEVRDGD 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+     + +  +   +  +P KI  ++ TG + L+FF++    + N    G    ++GK
Sbjct: 63  IIQTE-IVVESINLPKKSSQPLKITASNDTGSLLLVFFHKPPPFIFNKLQVGTSHIISGK 121

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++   + + + HP +I +         IE +YSL   LS       I++A+       + 
Sbjct: 122 VQFFDHYLQIAHPEFIVNPKLAKE---IEPIYSLTYLLSNKKLYSYIIKAIEIFEEKCKS 178

Query: 189 IEKD--------LLQKKSFPSIAEAFNIIHNPRKA------------------KDFEWTS 222
           IE          +LQ      +         P K                   ++ +  +
Sbjct: 179 IEDKEVKDYLDIILQNLQMLHVFHHCEEACMPTKQSSNVKSINARLPQPLKGLRNDDLYT 238

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
            A+++LA  EL+A QI+LL +R Q  +  G        I   IL  + F  T  Q+  I+
Sbjct: 239 NAKKQLAAKELIANQISLLNVRTQISRRQGNIYPKAVSIQANILNELGFELTSYQKQVIE 298

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I  D S K  M+R+LQGDVGSGKTLVAL+ M   V  G QA +MAP  +LA QHYEF  
Sbjct: 299 EIECDQSDKIEMMRLLQGDVGSGKTLVALLTMVNVVATGFQATLMAPTDLLANQHYEFFV 358

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           K  +NT I V ++TG +  A R+  + ++ +G+  I++GTHALFQ+ + + KL  +++DE
Sbjct: 359 KALKNTNIRVGLLTGKILGAARKNIMIQLDNGEIDILVGTHALFQEKVSFKKLGYIVIDE 418

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           QHRFGVQQRL L  K   P VL+MTATPIPR+L LT  GD+ ISK+  KP  R PI T  
Sbjct: 419 QHRFGVQQRLNLINKGVNPDVLVMTATPIPRSLALTMFGDMTISKLMGKPKSRLPIATNT 478

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEE------KKESNFRSVVERFNSLHEHFTS 516
           + +N+I+ +I  +   L  G++ YWICP IE+      +++S    V+ RFNS+   +  
Sbjct: 479 MSVNKIEHIIVAINKKLIAGERVYWICPLIEQGGKETPEEDSLLMDVMNRFNSIDNIYPG 538

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
              IIHG+M +  K+ +M  FK G  K+L+ATTVIEVGID+ +A++IIIENAE FGLAQL
Sbjct: 539 YTGIIHGKMKNEQKDQIMKQFKEGEIKILVATTVIEVGIDIPEATLIIIENAEQFGLAQL 598

Query: 577 HQLRGRVGRGEEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           HQLRGRVGRG   S CILLY+P  L K +  R  ++K T DGF IAE+DLK R  GEILG
Sbjct: 599 HQLRGRVGRGSLQSYCILLYNPKRLRKVARGRFEIMKQTNDGFYIAEQDLKLRGSGEILG 658

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +KQSG   F  A       LL  A K A
Sbjct: 659 VKQSGEIAFFFADLADDYDLLLKAHKFA 686


>gi|332530086|ref|ZP_08406036.1| ATP-dependent DNA helicase RecG [Hylemonella gracilis ATCC 19624]
 gi|332040559|gb|EGI76935.1| ATP-dependent DNA helicase RecG [Hylemonella gracilis ATCC 19624]
          Length = 752

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 233/713 (32%), Positives = 359/713 (50%), Gaps = 68/713 (9%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN 95
                 ++L  + P  + D      I+E+ +  +    G + + S  +++ RR     + 
Sbjct: 35  LGLNSDMELALHLPLRYEDETTLTPIAELRDGDMAQAEG-VVRESRVEVRARRQLIARIE 93

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL 155
           D  G   LL F       + +   G+++ V G+++       MVHP      +       
Sbjct: 94  DDAGHTLLLRFLNFYPSQQKLLSVGQRVRVRGEVRGGFLGREMVHPECKAVQAGAPLAQA 153

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK-------KSFPSIAEAFNI 208
           +  VY    GL     +K +  AL +L VL E +    LQ         +   +  A + 
Sbjct: 154 LTPVYPTTAGLPQAYLRKAVGRALDKL-VLDETLPPQALQIWPGGPRVLADWPLHAALDY 212

Query: 209 IHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQ--FKKEIGIPINVEGKIA 262
           +H+PR         + + PA  RL  +ELLA Q++ L  R+    ++   + +   G  A
Sbjct: 213 LHHPRPEVSLAALQDRSHPAWLRLKAEELLAQQLSQLQARQAQALRRAPTLALGQRGGEA 272

Query: 263 ----QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
               +++L  +PF+ T +Q    ++I +D+++ + M R+LQGDVGSGKT+VA +A A  +
Sbjct: 273 KGLHEQLLAVLPFALTGAQRRVSEEIARDLARPSPMHRLLQGDVGSGKTVVAALAAAVCI 332

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE----RIAHG 374
           +AG Q V+MAP  ILA QH + +  +     + V  + G      RR+ LE        G
Sbjct: 333 DAGYQCVLMAPTEILASQHVKKLVDWLTPLGVRVAWLAGGQKTKERRETLEAIDRAPQEG 392

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ--------------KATA 420
            A +I+GTHA+ QD ++++KL L IVDEQHRFGV QRL L +              +   
Sbjct: 393 GAQLIVGTHAVIQDKVRFHKLGLAIVDEQHRFGVAQRLALREKVMEGGDAVEGGAKQPVE 452

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH+L+M+ATPIPRTL ++   D+D+S + E P GR PI T +I   R  E+I R++  L+
Sbjct: 453 PHMLMMSATPIPRTLAMSYYADLDVSTLDELPPGRSPIVTRVISEQRRPELIARIRAQLA 512

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS----------------------- 517
           EG++ YW+CP IEE +  +  +       L      +                       
Sbjct: 513 EGRQVYWVCPLIEESEAVDLTNATATHAELTAALNDAPHAAPLPPEGASPALGRPGGGGG 572

Query: 518 --IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             I ++H R+   +K++VM  F  G   LL++TTVIEVG+DV +A++++IE+AE FGL+Q
Sbjct: 573 IQIGLLHSRLPAAEKQAVMAEFVAGRMGLLVSTTVIEVGVDVPNATLMVIEHAERFGLSQ 632

Query: 576 LHQLRGRVGRGEEISSCILLYH----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           LHQLRGRVGRG + S+C+LLY     P L + +  RL  +  T DGF IA  DL+ R  G
Sbjct: 633 LHQLRGRVGRGAQASACVLLYSTGDAPRLGQTARERLKAMAETNDGFEIARRDLEIRGPG 692

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           E LG +QSG      A       LL+ AR+ A  +L Q P L + R  + R L
Sbjct: 693 EFLGARQSGAALLRFADLATDGELLDWARQTAALMLAQHPVL-AERHVA-RWL 743


>gi|237739914|ref|ZP_04570395.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 2_1_31]
 gi|229423522|gb|EEO38569.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 2_1_31]
          Length = 679

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 220/642 (34%), Positives = 344/642 (53%), Gaps = 15/642 (2%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ-K 86
            +++N  +       DL++Y P ++ +R     I +++    V +   +    +   +  
Sbjct: 12  KQVVNLKSLGIDTIYDLIYYFPRAYDNRSNVKNIGDLTFNEYVVVKASVMSVLNMPNRSG 71

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFH 146
           ++  K ++ DGTG + +L+F      +      G +    G+ KK       ++P Y  +
Sbjct: 72  KKIVKAMITDGTGIMEVLWF--GMPYISKSLKVGEEYIFIGQTKKSN-LFQFINPEYKLY 128

Query: 147 NSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFP-SIA 203
             Q+      I  +YS    ++ +  +KII + L   L    E I  DL++         
Sbjct: 129 KGQEKETAKEILPIYSSNKSITQNNLRKIIKKFLENFLKYFEENIPNDLVKGYKEIFERT 188

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG--KI 261
           +A   IH P   +  E  +    R A +ELL  ++ +L  R            +EG  + 
Sbjct: 189 QAIKNIHFPESVQAIEAANL---RFATEELLILELGILKNRFIIDSLNTKKYEIEGKKEK 245

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            +K L  +PF  T++Q+  IK+I  ++S    + R++QGDVGSGKT VA + +    E G
Sbjct: 246 VKKFLELLPFELTRAQKKVIKEIYDEISDGKIVNRLVQGDVGSGKTAVATVMLIYMAENG 305

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  +MAP  ILA QHY  +K+  +   + V ++T ++    + + LE IA+G   I+IG
Sbjct: 306 YQGALMAPTEILANQHYLGMKERLEKIGLRVGLLTSSIKGKKKTEILEAIANGDIDIVIG 365

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH+L +D++ + KL L+++DEQHRFGV QR KL +K    ++L+MTATPIPR+L L+  G
Sbjct: 366 THSLIEDNVVFKKLGLIVIDEQHRFGVNQRNKLREKGFLGNLLVMTATPIPRSLALSIYG 425

Query: 442 DIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           D+D+S I E P GR PIKT  I  ++ +  + + +   ++ G +AY++ P IE   +   
Sbjct: 426 DLDLSIIDELPPGRTPIKTKWIANDKDLSIMYDFIYKKVNSGNQAYFVAPLIETSDKMAL 485

Query: 501 RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           +SV +    +   F    I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  
Sbjct: 486 KSVDKVSEEIERRFSDKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPA 545

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           ++I+ I NAE FGL+ LHQLRGRVGRG + S C L+     ++NS  RLS+++ TEDGF+
Sbjct: 546 STIMTIYNAERFGLSALHQLRGRVGRGSKQSYCFLI-SESTTENSKQRLSIMEKTEDGFV 604

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           IAEEDLK R  GEI G++QSG               ++  R 
Sbjct: 605 IAEEDLKLRNSGEIFGLRQSGFSDLKFIDIIYDSKTIKDVRD 646


>gi|169350086|ref|ZP_02867024.1| hypothetical protein CLOSPI_00828 [Clostridium spiroforme DSM 1552]
 gi|169293299|gb|EDS75432.1| hypothetical protein CLOSPI_00828 [Clostridium spiroforme DSM 1552]
          Length = 670

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 225/691 (32%), Positives = 360/691 (52%), Gaps = 33/691 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL   R +  K    L+K+      N     DL+ + P  +        I+       +T
Sbjct: 6   PLKQIR-ISDKRIEVLNKM------NIYCLKDLVLHFPYRYDSIEATALIN----NEKIT 54

Query: 72  ITGYISQHSSFQLQKRRPYKILL----NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           I   +           R  +++     N    ++T+         LK    +G  +T+ G
Sbjct: 55  IEATLVDEPKV-FYNGRMSRMIFPILYNHEIYQVTI----FNRHFLKKNMVKGMILTIIG 109

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLP 186
           K  K      +          ++V+   I  VYSL  GL+   F+  + +AL+     + 
Sbjct: 110 KYSKGN----ITASDIRLKKLEEVS--GITPVYSLKDGLTQKSFQNYVKKALAFYQDHIQ 163

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + +    + K        A N+IH P   +D +        L Y+E L  Q+ +  ++  
Sbjct: 164 DEVPIAYMIKHHLIHKELALNLIHFPNSNRDIQEAM---RYLKYEEFLKFQLTMQYIKLS 220

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            KK +GI    + +I  K +  +PF+ T  Q+ A+ +IL+D+     M R +QGDVGSGK
Sbjct: 221 RKKNLGIKKQFDQQIINKFINELPFALTTDQKQAVNEILEDLKSDTTMYRFVQGDVGSGK 280

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+V  I + A   AG Q  +MAP  ILA QH+  ++K  ++T I + ++TG++    ++ 
Sbjct: 281 TVVGAIGLYANYLAGFQGALMAPTEILATQHFTLLQKLFKDTNINLTLLTGHLSNKEKQI 340

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             +++  G+ +I+IGTHALFQ+ + YYKL LVI DEQHRFGV QR  L +K      ++M
Sbjct: 341 IYQQLNDGKINIVIGTHALFQEKVNYYKLGLVITDEQHRFGVNQRKALKEKGQQVDFMIM 400

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL ++  GD+D+S I   P GRKPI + ++  + +  ++ +LK  L+ G + Y
Sbjct: 401 SATPIPRTLAISLYGDMDVSTIKTMPKGRKPIISDVVRSHSMKPILNKLKTYLASGGQCY 460

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP +EE +  + ++    +  +  +F     + ++HG+M D  K  +MD FK+   ++
Sbjct: 461 VVCPLVEESEAIDSKAATSIYAGMKSYFSGHYEVGLLHGKMDDETKNKIMDDFKDNQIQI 520

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG+DV +A+ ++I NAE FGL+QLHQLRGRVGRG++   C LL +   SK +
Sbjct: 521 LVSTTVIEVGVDVENANWMVIYNAERFGLSQLHQLRGRVGRGDKQGYCFLLTNSK-SKEA 579

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL  LKN  DGF ++  DLK R  G+ILG +QSG+P F+I       ++LE++RKDA 
Sbjct: 580 LERLEFLKNCYDGFEVSFYDLKLRGPGDILGDQQSGLPNFMIGDVFKDVNILEVSRKDAL 639

Query: 665 HILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
            +L  + +          I   L   N+   
Sbjct: 640 ELLKSESNDPVYLKLIKEIEEQLVDNNKYID 670


>gi|329767219|ref|ZP_08258746.1| ATP-dependent DNA helicase RecG [Gemella haemolysans M341]
 gi|328836886|gb|EGF86533.1| ATP-dependent DNA helicase RecG [Gemella haemolysans M341]
          Length = 669

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 220/672 (32%), Positives = 355/672 (52%), Gaps = 30/672 (4%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            +N L   + T +GVGKKY   L+++            D+L+  P            S +
Sbjct: 1   MINILEKSVGTIKGVGKKYLQALNEL------EIYTIRDILYNIPYRVS--SSTDFSSSV 52

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYK--ILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            +   V  TG +    S Q    R  +    L+  +G I ++FF +    LK    EGR 
Sbjct: 53  KDNEKVITTGKVETRVSTQFYGNRRSRSFFTLSTSSGSIKIVFFNQ--HYLKKNLVEGRD 110

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           + V G      N I      +     +      IE  Y L  G++   F K++ E+   +
Sbjct: 111 VVVKGTYNAANNTITASSVSFNIMEEKTKGD-TIEVFYHLKQGITQKKFIKLVEESFKMI 169

Query: 183 P---VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
               V+ + + ++    K    +      +H P+ +++F+    AR+  A+ EL   Q+ 
Sbjct: 170 DGENVILDLVPENF---KGIWKLERILYTLHYPKNSEEFD---KARKMFAFHELFNYQLK 223

Query: 240 LLLMRKQFKK-EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L L     +  +    + V  K  +    ++PF+ T +Q   I +I+ D+++  +M R+L
Sbjct: 224 LQLQNINSRIEDTRYSVGVNNKDIKVFKDSLPFTLTGAQSRVIDEIVTDLNEPYKMDRLL 283

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT VA   + A ++AG Q  IMAP  ILA QH+E   ++ ++  I V ++T +
Sbjct: 284 QGDVGSGKTAVAAATLYATIKAGYQTAIMAPTEILANQHFETFFEFFKDLNISVALLTSS 343

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
            P+  R   L  +  G+  ++IGTH+L Q+ +++  L  VI DEQHRFGV+QR  L+ K 
Sbjct: 344 TPKKERNTILSLLEVGEIELLIGTHSLIQEDVKFNNLKYVITDEQHRFGVRQRQLLSNKG 403

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            A + L+MTATPIPR+L +T + DI +S I E PAGRK ++T         +V++ +++ 
Sbjct: 404 EAVNSLMMTATPIPRSLAITLITDIKVSTIDELPAGRKKVQTYKANNKSFYKVLDNIRME 463

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDS 536
           L  G++ Y +CP IEE ++ + +++ E + ++  +      IAI+HG+MS+ +K+++++ 
Sbjct: 464 LDNGRQGYVVCPLIEESEKIDLQNIEETYENIKNYLPDDYKIAILHGKMSNKEKDAIVEK 523

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F      +LI+TTVIEVG++V +A+ +II +A  FGLA LHQLRGRVGR +  S CIL+ 
Sbjct: 524 FLAKEIHILISTTVIEVGVNVPNATFMIIVDAHRFGLATLHQLRGRVGRSKYQSYCILVT 583

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
                     R+ ++    DGF IAE DLKQR  G+  G KQSG+P F +A       L+
Sbjct: 584 DSK-----SERIDIMCLENDGFKIAEFDLKQRGPGDFFGTKQSGVPSFKVADLINDVDLM 638

Query: 657 EIARKDAKHILT 668
            +A+K A  I+ 
Sbjct: 639 YLAKKLAVKIIE 650


>gi|238063276|ref|ZP_04607985.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           sp. ATCC 39149]
 gi|237885087|gb|EEP73915.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           sp. ATCC 39149]
          Length = 735

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 214/738 (28%), Positives = 359/738 (48%), Gaps = 59/738 (7%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             PL     VG+K +  L+  ++   A      DL+++ P  + +R     I  +     
Sbjct: 10  DTPLKKL--VGEKTAKALAAHLDLHTAG-----DLIYHFPRRYDERGEHTDIRSLDVGEQ 62

Query: 70  VTITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           VT+   + +     +++RR    ++ + D +G      F+      +     GR     G
Sbjct: 63  VTVLAQVRRTDVRPMRQRRGKLLEVTVGDDSGGTLTCTFFGNQAWRERELRPGRWGLFAG 122

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNF-----------PLIEAVYSLPTGLSVDLFKKIIV 176
           K+ + + +  +  P Y+                      +  VY     +   +  + + 
Sbjct: 123 KVTEFRGKRQLNGPEYVLLGEGGDGEAAANEEVEEFAGALIPVYPAAAAVPTWVIARCVR 182

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
             L       +     +   ++   I  A   IH P      E    AR RL +DE  A 
Sbjct: 183 VVLDTFTPPEDPQPATIRATRNLIGIGTALREIHRPSSK---EALYRARRRLKWDEAFAV 239

Query: 237 QIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+ L+  + +             G +       +P+  T  Q +   +I  D++  + M 
Sbjct: 240 QLTLVQRKHRAAAWPARSRPPRAGALLDAFDARLPYELTGGQRAVGAEIAADLATAHPMH 299

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-----------KKY 344
           R+LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LA QH+  I           +  
Sbjct: 300 RLLQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHHRGILDLLGPLARGGELG 359

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
             +    VE++TG++  A RR+AL  +A G+A I++GTHAL  + + +  L LV+VDEQH
Sbjct: 360 AADGATSVELVTGSLGAAARRRALAEVAAGRAGIVLGTHALLYEGVDFADLGLVVVDEQH 419

Query: 405 RFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           RFGV+QR  L  KA   PHVL+MTATPIPRT+ +T  GD+++S +++ P GR PI + ++
Sbjct: 420 RFGVEQRDALRSKADQPPHVLVMTATPIPRTVAMTVYGDLEVSTLSQLPQGRSPIASHVV 479

Query: 464 PINR----IDEVIERLKVVLSEGKKAYWICPQIEE----------KKESNFRSVVERFNS 509
           P       +D    RL+  ++ G +AY +CP+I +          +++ N R        
Sbjct: 480 PAAEKPAFLDRAWRRLREEVAAGHQAYVVCPRIGDPGAGSEEEPPREDDNGRRPPLAVTE 539

Query: 510 LHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +             I I+HGR+   +K++VM +F +G   +L+ATTV+EVG++V +A+++
Sbjct: 540 VAPLLAEGPLHGLRIGILHGRLPADEKDAVMRAFADGELDVLVATTVVEVGVNVPNATVM 599

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           I+ +A+ FG++QLHQLRGRVGRG     C+L+       ++  RL  + +T DGF +AE 
Sbjct: 600 IVLDADRFGVSQLHQLRGRVGRGSAAGLCLLVTEAAEGSSARERLDAVASTTDGFKLAEL 659

Query: 624 DLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           DL+QR+EG++LG  QSG      +        L+  AR +A  ++ +DP+L   R  ++ 
Sbjct: 660 DLEQRREGDVLGATQSGRRSHLRLLSLLRDTDLIRDARAEAIALVDEDPELE--RYPALA 717

Query: 683 ILLYLYQYNEAFQFIRAG 700
             +     +E  +++  G
Sbjct: 718 ASVAALVDSERAEYLEKG 735


>gi|300870577|ref|YP_003785448.1| ATP-dependent DNA helicase RecG [Brachyspira pilosicoli 95/1000]
 gi|300688276|gb|ADK30947.1| ATP-dependent DNA helicase, RecG [Brachyspira pilosicoli 95/1000]
          Length = 690

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 222/671 (33%), Positives = 350/671 (52%), Gaps = 22/671 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI--SEER 68
             +   +GVG KY+  L+K       N     DL+ + P ++ DR    KI+E   + ++
Sbjct: 11  TDIKYLKGVGPKYAETLAK------KNIFTLYDLITFFPRTYDDRRNTLKINEALKNPDK 64

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              +   +    SF  Q R+   I++ DG     +  +  +         +G K+ +TGK
Sbjct: 65  NSVVYVEVIDVGSFTFQFRKKPLIIVTDGITLCEVPIYGGRVPA---GATKGAKLYLTGK 121

Query: 129 -IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
            ++ ++ ++      +   +S  +++  I  +Y L  GLS    + +IV  L R     +
Sbjct: 122 FVRNMRGKVQCRFVEFEKPSSNSLSYGKIVPIYPLTEGLSQKKLRTLIVSELERFEKNMQ 181

Query: 188 W-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + I K + +K    S   +   +H P   +  E     RE L ++E L  Q   L  R+ 
Sbjct: 182 YDIPKVIKKKYRLKSFVSSIMEMHFPTSFEALEEA---RESLVFEEFLTFQYIHLSERRP 238

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
                    N    + +++  ++ F+ T  Q +AI++I +DM    ++ R+LQGDVG+GK
Sbjct: 239 NILIKEERYN-SSNLLERVKLSLGFNLTDDQNNAIEEIKKDMFSNRQLFRLLQGDVGAGK 297

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ----IIVEIITGNMPQA 362
           T+VA +      E+  Q   +AP  ILA QHY   KK  +N      I ++I+T ++ Q 
Sbjct: 298 TIVAFLTALIPTESNFQTAFLAPTEILALQHYYTFKKIIKNANLEDVIKIDILTSSVSQN 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R   L+R+  G+ HI++GTH++  D + +  L   IVDEQ RFGV QR KL  K     
Sbjct: 358 ERAYTLKRLREGKTHILVGTHSILYDEVVFKNLAYAIVDEQQRFGVNQRNKLLSKGNNVD 417

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            LLMTATPIP++L LT  G++D+S I   P GRK + T    +   D   + LK  +++G
Sbjct: 418 YLLMTATPIPQSLALTLFGELDLSIIKSMPKGRKGVLTKYKELYERDHCYKFLKSRIAKG 477

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           ++ Y + P IE    S      E   +   +F + +I IIHG+M D +KE +M+ F NG 
Sbjct: 478 EQGYVVFPFIENDDSSIITLSSEFERAKQTYFENINIEIIHGKMKDEEKEYIMNRFSNGE 537

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            K+L +TTVIEVGID  +A+ I+IE AE FGL+QLHQLRGRVGRG+++  C L+ H  L+
Sbjct: 538 IKVLFSTTVIEVGIDNPNATTILIEGAERFGLSQLHQLRGRVGRGDKLGYCYLILHSELN 597

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                R++V+  T DGF IAE+DL+ R  GE LG KQSG+  F +        ++  A+ 
Sbjct: 598 DIIKERINVICETTDGFKIAEKDLELRGAGEFLGDKQSGIADFKLGNIVKDAEIMRKAKD 657

Query: 662 DAKHILTQDPD 672
           + + +L  D +
Sbjct: 658 EMRELLKIDRE 668


>gi|256397125|ref|YP_003118689.1| ATP-dependent DNA helicase RecG [Catenulispora acidiphila DSM
           44928]
 gi|256363351|gb|ACU76848.1| ATP-dependent DNA helicase RecG [Catenulispora acidiphila DSM
           44928]
          Length = 746

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 225/745 (30%), Positives = 372/745 (49%), Gaps = 80/745 (10%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL   + VG + +  L               DLL ++P  ++ R    ++SE+    
Sbjct: 5   LDEPLR--KAVGDRTAKVLH-----TGLGLDTVGDLLRHYPRKYVKRGELTELSELEPGT 57

Query: 69  IVTITGYISQHSSFQL--QKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITV 125
             TI   +++ S   +  ++ +   + + D     + + FF  +     N    G     
Sbjct: 58  EATIVAQVTKVSRRSMAARRGQMMTVEVRDAADTAVEITFFNPRAA---NALKPGMLGMF 114

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFP---------LIEAVYSLPTGLSVDLFKKIIV 176
            GK+ +   +I + +P +   ++   +            +  +Y    GL      + + 
Sbjct: 115 AGKVGEYHGKIQLTNPEFAKLDADTEDAGDSPIDNWAGELMPLYPSTGGLPSWKIARCVR 174

Query: 177 EALSRLPVL--PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
             + +L      + + + +  ++   ++ EAF  IH P    D+   + AR+RL +DE L
Sbjct: 175 MVIDQLDADIEDDPMPRPVRARQGLLTLTEAFRRIHRP---DDWPEIAVARKRLKWDEAL 231

Query: 235 AGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q+ L   R+  K    +P   V G +       +PF+ T  Q    ++I  D++ ++ 
Sbjct: 232 PMQVVLAQRREALKALPAVPRRRVPGGLLDAFDAALPFTLTAGQRQVGEEIEADLASEHP 291

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT-------- 345
           M R+LQGDVGSGKT+VAL AM A V+AGGQAV++AP  +LAQQH+  I +          
Sbjct: 292 MHRLLQGDVGSGKTMVALRAMLAVVDAGGQAVMLAPTEVLAQQHHRSIVQMLGAGADVPM 351

Query: 346 ----------------QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
                              ++ V ++TG+     RR  L   A G A I+IGTHA+ QD 
Sbjct: 352 DLFSETAAPDAAPFDPNRKRVRVALLTGSQNAKDRRTNLLDAASGTAGIVIGTHAVIQDH 411

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKI 448
           +Q+  L LV+VDEQHRFGV+QR  L  K    PHVL+MTATPIPRT+ +T  GD++ S +
Sbjct: 412 VQFADLGLVVVDEQHRFGVEQRDALRAKGEDPPHVLVMTATPIPRTVAMTVFGDLETSVL 471

Query: 449 TEKPAGRKPIKTVIIPINRID----EVIERLKVVLSEGKKAYWICPQIEEK--------- 495
           +E PAGR PI T ++  +        V ER++  +  G++AY +CP+I E+         
Sbjct: 472 SELPAGRSPIATHVVAAHEHPSHFTRVWERIREEVGAGRQAYVVCPRIGEESGSGEVSDD 531

Query: 496 ---------KESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
                    ++    +VV+    L E       + ++HGRM+  DK++VM ++      +
Sbjct: 532 GSELVSEPGQQRPPLAVVDVAAKLAEGPLKGLRVGMLHGRMAPDDKDAVMRAYAGHELDV 591

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+ATTVIEVG++V ++++I++ +A+ FG++QLHQLRGRVGRG+    C+L+   P    +
Sbjct: 592 LVATTVIEVGVNVPNSTVIVVMDADRFGVSQLHQLRGRVGRGKWPGLCLLVTESPDGAPA 651

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDA 663
             RL+ + +T DGF +++ DL  RKEG++LG  QSG      +      + ++  AR +A
Sbjct: 652 RERLAAVASTLDGFELSKIDLAIRKEGDVLGATQSGYRSSLRMLSVIDDEDIIRAARDEA 711

Query: 664 KHILTQDPDLTSVR--GQSIRILLY 686
             ++  DP L +     ++I +LL 
Sbjct: 712 TPLVEADPALNAYPALARTIAVLLD 736


>gi|221194768|ref|ZP_03567825.1| ATP-dependent DNA helicase RecG [Atopobium rimae ATCC 49626]
 gi|221185672|gb|EEE18062.1| ATP-dependent DNA helicase RecG [Atopobium rimae ATCC 49626]
          Length = 720

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/697 (32%), Positives = 357/697 (51%), Gaps = 32/697 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   R V +  +  L ++        +R  DLL + P  ++D      I+  +   
Sbjct: 20  LGDEVGCLRYVTENRAEALGRL------GISRVSDLLVHIPHRYLDFSSETSIAYTTIGT 73

Query: 69  IVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            VTI   + + +    + R    ++   D TG +T +FF  +   +     EG ++  +G
Sbjct: 74  DVTIRAKVEKITVKHPRPRMSIVEVEAVDATGVMTAVFF--RQPWVAQQLHEGDEVAFSG 131

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
            +        M  P +    ++         I  V+    G+S    ++II  AL+    
Sbjct: 132 TMTFAYGFHQMKAPFFEVITTESEKMKSHAKILPVHPATEGISPAWMRRIISAALADQGD 191

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + +W+   L+  + F ++A A   +H P      E        LAYDELL  Q+ALL  R
Sbjct: 192 VLDWLPARLVASRGFMTLARALREVHFPSSMAAAERARRR---LAYDELLCLQMALLARR 248

Query: 245 -KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
             + + +      ++G   + +L  +PF  T+ Q +A  DIL DM+    M R+L GDVG
Sbjct: 249 TFECEGDTPFAHTIDGSKKRALLAALPFELTEEQRTAAHDILHDMAAPEIMNRLLLGDVG 308

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT+VA +A+AA  ++G QA +MAP  +LA+Q+ E I        I   ++TG+ P A 
Sbjct: 309 TGKTVVAALALAAVADSGTQAAMMAPTSVLAKQYAEKIGPLLTAADIPWALVTGSTPAAE 368

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           R     R+A G   +I GT AL  + I + +L L+++DEQHRFGV QR  L +K +   +
Sbjct: 369 RTAIENRLATGAISVIFGTSALLSEGINFRQLTLIVIDEQHRFGVNQRSALRKKGSGVDL 428

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL L+  GDI +S+I  +P     +KT ++  N +D     ++  ++ G+
Sbjct: 429 LAMTATPIPRTLALSIYGDIALSRIAHRPLAGAGLKTELLQSNNLDLAYGAVRDAVAAGQ 488

Query: 484 KAYWICPQIEEKKESNF--------------RSVVERFNSLHEHFTS--SIAIIHGRMSD 527
           +AY +CP I+E  E                  S +  + +L     S   + I+ GRMS 
Sbjct: 489 QAYVVCPLIDETDEGTNLDDVPPNVQTQTKLHSALATYQALQRGVFSDLRLGILTGRMSS 548

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K+ VM+ F++G   +L++TTVIEVGIDV +A++++I NA+ FGLA LHQLRGRVGRG 
Sbjct: 549 AEKDEVMEKFRSGDLDVLVSTTVIEVGIDVPNATVMLIYNADRFGLATLHQLRGRVGRGS 608

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
                 L        ++  RL+ L+ T DGF +AE DLK R+EGE LG +QSG     IA
Sbjct: 609 LPGKVFLNSDAKRGTSARRRLAALEATADGFKLAELDLKLRREGETLGYRQSGNATLKIA 668

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
                  ++E A KDA+ +  +DP+L   + +++ + 
Sbjct: 669 DLYGDADIIETAYKDARSLYRRDPELKEPQHRTMALE 705


>gi|157964733|ref|YP_001499557.1| ATP-dependent DNA helicase RecG [Rickettsia massiliae MTU5]
 gi|157844509|gb|ABV85010.1| ATP-dependent DNA helicase RecG [Rickettsia massiliae MTU5]
          Length = 713

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 257/689 (37%), Positives = 372/689 (53%), Gaps = 43/689 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+ + TF  + +     L ++            DLLFY P S+ ++   P ++E+ +  
Sbjct: 9   LFSSVKTFINIREDTVSALKRL------GINNIRDLLFYLPVSYQNKILSPNLTEVRDGD 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+     + +  +   +  +P KI  ++ TG + L+FF++    + N    G    ++GK
Sbjct: 63  IIQTE-IVVESINLPKKSSQPLKITASNDTGSLLLVFFHKPPPFIFNKLQVGTSHIISGK 121

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++   + + + HP +I +         IE +YSL   LS       I++A+       + 
Sbjct: 122 VQFFDHYLQISHPEFIVNPKLAKE---IEPIYSLTYLLSNKQLYSYIIKAIEIFEEKCKS 178

Query: 189 IEKD--------LLQKKSFPSIAEAFNIIHNPRKA------------------KDFEWTS 222
           IE          +LQ      +         P K                   ++ +  +
Sbjct: 179 IEDKEVKEYLDIILQNLQMLHVFRHCEEACMPTKQSSNVKLINSRLPQPLKGLRNDDLYT 238

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
            A+++LA  EL+A QI+LL +R Q  +  G        I   IL  + F  T  Q+  I+
Sbjct: 239 NAKKQLAAKELIANQISLLNVRTQISRRQGNIYPKAVSIQANILNELGFELTSYQKQVIE 298

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I  D S K  M+R+LQGDVGSGKTLVAL+ M   V  G QA +MAP  +LA QHYEF  
Sbjct: 299 EIECDQSDKIEMMRLLQGDVGSGKTLVALLTMVNVVVTGFQATLMAPTDLLANQHYEFFV 358

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           K  +NT I V ++TG +  A R+  + ++ + +  I++GTHALFQ+ + + KL  +++DE
Sbjct: 359 KALKNTNIRVGLLTGKILGAARKNIMIQLDNDEIDILVGTHALFQEKVSFKKLGYIVIDE 418

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           QHRFGVQQRL L  K   P VL+MTATPIPR+L LT  GD+ ISK+  KP  R PI T  
Sbjct: 419 QHRFGVQQRLNLINKGVNPDVLVMTATPIPRSLALTMFGDMTISKLMGKPKSRLPIATNT 478

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV------VERFNSLHEHFTS 516
           + +N+I+ +I  +   L  G++ YWICP IE+ ++            + RFNS+   +  
Sbjct: 479 MSVNKIEHIIAAINKKLIAGERVYWICPLIEQGEKETPEEDSLLMDVMNRFNSIDNIYQG 538

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
              IIHG+M +  K+ +M  FK G  K+L+ATTVIEVGID+  A++IIIENAE FGLAQL
Sbjct: 539 YTGIIHGKMKNEQKDQIMKQFKEGEIKILVATTVIEVGIDIPAATLIIIENAEQFGLAQL 598

Query: 577 HQLRGRVGRGEEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           HQLRGRVGR    S CILLY+P  L K +  R  ++K T DGF IAE+DLK R  GEILG
Sbjct: 599 HQLRGRVGRSSLQSYCILLYNPKRLRKVARGRFEIMKRTNDGFYIAEQDLKLRGSGEILG 658

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           +KQSG  +F  A       LL  A K A+
Sbjct: 659 VKQSGEIEFFFADLVDDYDLLLKAHKFAE 687


>gi|296127094|ref|YP_003634346.1| DEAD/DEAH box helicase domain protein [Brachyspira murdochii DSM
           12563]
 gi|296018910|gb|ADG72147.1| DEAD/DEAH box helicase domain protein [Brachyspira murdochii DSM
           12563]
          Length = 696

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 221/663 (33%), Positives = 347/663 (52%), Gaps = 22/663 (3%)

Query: 17  RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT--ITG 74
           +GVG KY+  L+K             DL+ + P  + DR    K+ E  E +  T  +  
Sbjct: 19  KGVGPKYAEILAK------KGIITLYDLIAFFPRDYDDRRKTLKLHEALENKEKTSVVYV 72

Query: 75  YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK-IKKLK 133
            +   SSF  Q +    +++ DG     +  +  +   L     +G K+ +TGK ++  +
Sbjct: 73  EVLDISSFNFQYKNKPLVIVTDGAAICEVPIYGGR---LPAGVAKGAKLYLTGKFVRGNR 129

Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW-IEKD 192
            ++      +   +S  +++  I  +Y L  GLS    + +IV+ L       ++ I   
Sbjct: 130 GKLQCRMTEFEKPSSNALSYGKIVPIYPLTEGLSQKKLRTLIVDELEVFEKNMKYDIPNM 189

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
           + +K    S   +   +H P     FE    ARE L ++E L  Q   L  R+       
Sbjct: 190 IKKKYRLKSFVSSIIEMHFPTS---FEALDEARESLIFEEFLTFQYIHLSERRPNILIKD 246

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
              N    + +K+   +PF  T+ Q +AI++I  D+  K +M R+LQGDVG+GKT+VA +
Sbjct: 247 ERYN-SSTMLEKVKSALPFELTEDQLNAIEEIKNDLFSKKQMFRLLQGDVGAGKTIVAFL 305

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ----IIVEIITGNMPQAHRRKAL 368
                 E+G Q   +AP  ILA QHY   KK  +       I ++I+T ++ Q+ R   L
Sbjct: 306 TALIPAESGFQTAFLAPTEILALQHYNTFKKLIKLAGLEDTIKIDILTSSVSQSERGYLL 365

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           +R+  G+++I++GTH++  D + +  L   IVDEQ RFGV QR KL  K      LLMTA
Sbjct: 366 KRLREGKSNILVGTHSIIYDEVIFKNLSYAIVDEQQRFGVAQRNKLLSKGKNVDYLLMTA 425

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIP++L LT  G++D+S I   P+ RK + T    +   D   + LK  +S+G++ Y +
Sbjct: 426 TPIPQSLALTLFGELDLSIIKTLPSSRKGVLTKYKELYERDHCYKFLKNRISKGEQGYVV 485

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            P IE    S      E   +   +F+   I IIHG+M D +KE +M+ F +G  K+L +
Sbjct: 486 FPLIENNDSSFITLSSEFQRAKETYFSDTQIEIIHGKMKDEEKEYIMNRFASGEIKVLFS 545

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVGID  +A+ I+IE AE FGL+QLHQLRGRVGRG+++  C L+ H  L+     R
Sbjct: 546 TTVIEVGIDNPNATTILIEGAERFGLSQLHQLRGRVGRGDKLGYCYLILHSELNDIIKER 605

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           ++++  T DGF I+E+DL+ R  GE LG KQSG+P F +        ++  A+ + + +L
Sbjct: 606 INIICETTDGFKISEKDLELRGAGEFLGDKQSGLPDFKLGNIIKDKEIMRKAKDEMRSLL 665

Query: 668 TQD 670
             +
Sbjct: 666 KDE 668


>gi|262066091|ref|ZP_06025703.1| ATP-dependent DNA helicase RecG [Fusobacterium periodonticum ATCC
           33693]
 gi|291380186|gb|EFE87704.1| ATP-dependent DNA helicase RecG [Fusobacterium periodonticum ATCC
           33693]
          Length = 690

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 220/642 (34%), Positives = 343/642 (53%), Gaps = 15/642 (2%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ-K 86
            ++I+  +       DL++Y P ++ +R     I  ++    V +   +    +   +  
Sbjct: 23  KQVISLKSLGIETIYDLIYYFPRAYDNRSNVKSIGNLTFNEYVVVKASVMSVLNMPNRSG 82

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFH 146
           ++  K ++ DGTG + +L+F      +      G +    G+ KK       ++P Y  +
Sbjct: 83  KKIVKAIITDGTGIMEVLWF--GMPYISKSLKVGEEYIFIGQTKKSN-LFQFINPEYKLY 139

Query: 147 NSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEKDLLQKKSFP-SIA 203
             Q+      I  +YS    ++ +  +KII + L   L    E I  DL++         
Sbjct: 140 KGQEKETSKEILPIYSSNKSITQNNLRKIIKKFLENFLKYFEENIPNDLVKGYKEIFERT 199

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG--KI 261
           +A   IH P   +  E  +    R A +ELL  ++ +L  R            +EG  + 
Sbjct: 200 QAIKNIHFPESVQAIEAANL---RFATEELLILELGILKNRFIVDSLNTKKYEIEGKKEK 256

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            +K L  +PF  T++Q+  IK+I  ++S    + R++QGDVGSGKT VA + +    E G
Sbjct: 257 VRKFLELLPFELTRAQKKVIKEIYDEISDGKIVNRLVQGDVGSGKTAVATVMLIYMAENG 316

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  +MAP  ILA QHY  +K+  +   + V ++T ++    + + LE IA+G   I+IG
Sbjct: 317 YQGALMAPTEILANQHYLGMKERLEKIGLRVGLLTSSIKGKKKTEILEAIANGDIDIVIG 376

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           TH+L +D++ + KL L+++DEQHRFGV QR KL +K    ++L+MTATPIPR+L L+  G
Sbjct: 377 THSLIEDNVVFKKLGLIVIDEQHRFGVNQRNKLREKGFLGNLLVMTATPIPRSLALSIYG 436

Query: 442 DIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           D+D+S I E P GR PIKT  I  ++ +  + + +   ++ G +AY++ P IE   +   
Sbjct: 437 DLDLSIIDELPPGRTPIKTKWIANDKDLSIMYDFIYKKVNSGNQAYFVAPLIETSDKMAL 496

Query: 501 RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           +SV +    +   F    I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV  
Sbjct: 497 KSVDKVSEEIERRFSDKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPA 556

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           ++I+ I NAE FGL+ LHQLRGRVGRG + S C L+     ++NS  RLS+++ TEDGF+
Sbjct: 557 STIMTIYNAERFGLSALHQLRGRVGRGSKQSYCFLI-SESTTENSKQRLSIMEKTEDGFV 615

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           IAEEDLK R  GEI G++QSG               ++  R 
Sbjct: 616 IAEEDLKLRNSGEIFGLRQSGFSDLKFIDIIYDSKTIKDVRD 657


>gi|196231017|ref|ZP_03129877.1| ATP-dependent DNA helicase RecG [Chthoniobacter flavus Ellin428]
 gi|196224847|gb|EDY19357.1| ATP-dependent DNA helicase RecG [Chthoniobacter flavus Ellin428]
          Length = 693

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 223/678 (32%), Positives = 348/678 (51%), Gaps = 33/678 (4%)

Query: 33  CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK-RRPYK 91
                 T    LL + P  + DR           E  V + G + + S  +++  ++ + 
Sbjct: 12  LERVGITTIDGLLTHFPKRYEDRTRFDHFPTGDSEEPVCVCGIVKKTSLRRIRGWQKMFD 71

Query: 92  ILLNDG-----TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFH 146
           ++L +      +  IT  +F      ++ +   G+++ V GK K+  + +++ HP +   
Sbjct: 72  VILEEEEAHALSQPITCRWFN--AHWVEKMIVTGQRLVVYGKPKRSGSSVVLAHPEFEIV 129

Query: 147 NSQDV---NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP-EWIEKDLLQKKSFPSI 202
            +      +   +  ++    GLS  + +++I + L  +   P E +  D L        
Sbjct: 130 ENDAEVSLHLNRLTPIHRATEGLSPRVMRRLIWDVLEHMEKTPVESLIPDSLDA---TPR 186

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
             A   +H P      E  + AR  L   E    Q+ +   R +   + G    V   + 
Sbjct: 187 GWALRQVHFPDNQ---ETLAKARRHLVLTEFFGMQLCVAAKRAEQTSQPGASHFVADTLM 243

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           Q++   +PF  T +Q+ AI +I  D++    M R+L GDVGSGKTLVAL AM  AVEAG 
Sbjct: 244 QRLHAALPFPLTGAQQRAIGEIRADLAALRPMNRLLHGDVGSGKTLVALSAMLLAVEAGY 303

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR--------------RKAL 368
           QA +MAP  ILA+QHY    +  +   + V + TG   +                    +
Sbjct: 304 QAALMAPTQILAEQHYLNFLRLCEPLGLRVSLRTGARREDSSALPLFENAVQRVPGNDGI 363

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           + +   + HI++GTHAL  +   + +L L ++DEQH+FGV QR +L  +  AP VL+MTA
Sbjct: 364 DPLPDSEPHILVGTHALLYEGAGFTRLGLAVIDEQHKFGVLQRARLRNQGVAPDVLVMTA 423

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL +T  GD+D+S + E PA R  I T +    ++ + ++ L+  L  G++AY +
Sbjct: 424 TPIPRTLTMTLYGDLDVSTLDELPAHRGKIVTGVRDAAKLPDAVKFLREHLEAGRQAYVV 483

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            P I+E ++   ++    F    E       A++HGR++  +K+++M+ F+ G  K LIA
Sbjct: 484 YPLIDESEKLEAKAAATEFAKWQEFLAPMPCALLHGRIAPEEKDAIMEKFRGGETKALIA 543

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTVIEVGIDV +A+I++IENAE FGLAQLHQLRGR+GRG+  S CILL  P     +  +
Sbjct: 544 TTVIEVGIDVPNANIMLIENAERFGLAQLHQLRGRIGRGQHKSYCILLRSPKAEAETAEK 603

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L +L+ T DGF IAE DLK R  G+ILG  QSG+P   +  P     L+ +AR  A  + 
Sbjct: 604 LRILEATSDGFEIAEADLKLRGPGDILGTAQSGLPPLKLGDPLADHELMRLARNAAFLLF 663

Query: 668 TQDPDLTSVRGQSIRILL 685
            +DP L     Q  R +L
Sbjct: 664 ERDPQLERPENQRFRRVL 681


>gi|317495415|ref|ZP_07953784.1| ATP-dependent DNA helicase RecG [Gemella moribillum M424]
 gi|316914474|gb|EFV35951.1| ATP-dependent DNA helicase RecG [Gemella moribillum M424]
          Length = 669

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/672 (33%), Positives = 355/672 (52%), Gaps = 30/672 (4%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS-E 63
            +N L   + T +GVGKKY   L+++            D+L+  P            S  
Sbjct: 1   MINILEKSVETIKGVGKKYLQTLNEL------EIYTIRDVLYNIPYRV---SSSTDFSMS 51

Query: 64  ISEERIVTITGYISQHSSFQLQKRRPYK--ILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + +   V  TG +    S Q    +  +    L+  TG I ++FF +    LK    EGR
Sbjct: 52  VKDNEKVVATGKVETRVSTQFYGNKRSRSFFSLSTPTGSIKIVFFNQ--HYLKKNLLEGR 109

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
            I V G   K  N I      +     +  N   IE  Y L  G++   F K++ E+ + 
Sbjct: 110 DIVVKGIYNKANNTITASSISF-GKEEKAENNDKIEVFYHLKQGITQKRFIKLVEESFNM 168

Query: 182 LPVLPEWIEKDLLQK--KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +    E +  DL+ +  K    + +    +H P   KD E    AR+  A+ EL   Q+ 
Sbjct: 169 ID--EENVILDLVPENFKGIWKLEKILYTLHFP---KDVEQFDKARKMYAFHELFNYQLK 223

Query: 240 LLLMRKQFK-KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L L     + ++    I +     Q+  + +PFS T +Q+  I +I  D++   +M R+L
Sbjct: 224 LQLQNINSRLEDERYRICINNNDIQEFTQQLPFSLTNAQKRVIDEIAADLNTPYKMDRLL 283

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT VA   +   +++G QA IMAP  ILA QH+E   ++ +   I + ++T N
Sbjct: 284 QGDVGSGKTAVAAATLYGVIKSGYQAAIMAPTEILANQHFETFFEFFKELNISIALLTSN 343

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
            P+  R K L  +  G+  ++IGTH+L QD + +  L  VI DEQHRFGV+QR  L+ K 
Sbjct: 344 TPKKERNKILSLLEVGEVELLIGTHSLIQDDVIFKNLKYVITDEQHRFGVRQRKILSNKG 403

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            A + L+MTATPIPR+L +T + DI +S I E P+GRK ++T         +V++ + + 
Sbjct: 404 EAVNSLMMTATPIPRSLAITLITDIKVSTIDELPSGRKKVQTYKANNKSFYKVLDNIMME 463

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDS 536
           L  G++ Y +CP IEE ++ + ++V + +  + E+   S  IAI+HG+MS+ +K+ +++ 
Sbjct: 464 LDSGRQGYVVCPLIEESEKMDLQNVEDIYEKIKEYLPDSYKIAILHGKMSNKEKDEIVER 523

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F N    +LI+TTVIEVG++V +A+ +I+ +A  FGLA LHQLRGRVGR +  S CIL+ 
Sbjct: 524 FLNKEIHILISTTVIEVGVNVPNATFMIVVDAHRFGLATLHQLRGRVGRSKFQSYCILIT 583

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
                     R+ ++    DGF IAE DLK+R  G+  G KQSG+P F +A       L+
Sbjct: 584 DSK-----SERIDIMCLENDGFKIAEFDLKKRGPGDFFGTKQSGVPSFKVADLINDVDLM 638

Query: 657 EIARKDAKHILT 668
            +A++ A  I+ 
Sbjct: 639 YLAKRLALKIIE 650


>gi|34581468|ref|ZP_00142948.1| ATP-dependent DNA helicase RecG [Rickettsia sibirica 246]
 gi|28262853|gb|EAA26357.1| ATP-dependent DNA helicase RecG [Rickettsia sibirica 246]
          Length = 713

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 257/688 (37%), Positives = 372/688 (54%), Gaps = 43/688 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+ + TF  + +     L ++            DLLFY P S+ ++   P ++E+ +  
Sbjct: 9   LFSSVKTFINIREDTVSALKRL------GINNIRDLLFYLPVSYQNKILSPNLTEVRDGD 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+     + +  +   +  +P KI  ++ TG + L+FF++    + N    G    ++GK
Sbjct: 63  IIQTE-IVVESINLPKKSSQPLKITASNDTGSLLLVFFHKPPPFIFNKLQVGTSHIISGK 121

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++   + + + HP +I +         IE +YSL   LS       I++A+       + 
Sbjct: 122 VQFFDHYLQIAHPEFIVNPKLAKE---IEPIYSLTYLLSNKQLYSYIIKAIEIFEEKCKS 178

Query: 189 IEKD--------LLQKKSFPSIAEAFNIIHNPRKA------------------KDFEWTS 222
           IE          +LQ      +      +  P K                   ++ +  +
Sbjct: 179 IEDKEVKDYLDIILQNLQMLHVFHHCEEVCMPTKQSSNVKLINSRLPQPLKGLRNDDLYT 238

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
            A+++LA  EL+A QI+LL +R Q  +  G        I   IL  + F  T  Q+  I+
Sbjct: 239 NAKKQLAAKELIANQISLLNVRTQISRRQGNIYPKAVSIQANILNELGFELTSYQKQVIE 298

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I  D S K  M+R+LQGDVGSGKTLVAL+ M   V  G QA +MAP  +LA QHYEF  
Sbjct: 299 EIECDQSDKIEMMRLLQGDVGSGKTLVALLTMVNVVATGFQATLMAPTDLLANQHYEFFV 358

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           K  +NT I V ++TG +    R+  + ++ + +  I++GTHALFQ+ + + KL  +++DE
Sbjct: 359 KALKNTNIRVGLLTGKILGTARKNIMIQLDNDEIDILVGTHALFQEKVSFKKLGYIVIDE 418

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           QHRFGVQQRL L  K   P VL+MTATPIPR+L LT  GD+ ISK+  KP  R PI T  
Sbjct: 419 QHRFGVQQRLNLINKGVNPDVLVMTATPIPRSLALTMFGDMTISKLMGKPKSRLPIATNT 478

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV------VERFNSLHEHFTS 516
           + +N+I+ +I  +   L  G++ YWICP IE+ ++            + RFNS+   +  
Sbjct: 479 MSVNKIEHIIVAINKKLIAGERVYWICPLIEQGEKETSEEDSLLMDVMNRFNSIDNIYQG 538

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
              IIHG+M +  K+ +M  FK G  K+L+ATTVIEVGID+ +A++IIIENAE FGLAQL
Sbjct: 539 YTGIIHGKMKNEQKDQIMKQFKEGEIKILVATTVIEVGIDIPEATLIIIENAEQFGLAQL 598

Query: 577 HQLRGRVGRGEEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           HQLRGRVGRG   S CILLY+P  L K +  R  ++K T DGF IAE+DLK R  GEILG
Sbjct: 599 HQLRGRVGRGSLQSYCILLYNPKRLRKVARGRFEIMKQTNDGFYIAEQDLKLRGSGEILG 658

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +KQSG   F  A       LL  A K A
Sbjct: 659 VKQSGEIAFFFADLADDYDLLLKAHKFA 686


>gi|229586932|ref|YP_002845433.1| ATP-dependent DNA helicase RecG [Rickettsia africae ESF-5]
 gi|228021982|gb|ACP53690.1| ATP-dependent DNA helicase RecG [Rickettsia africae ESF-5]
          Length = 713

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 257/688 (37%), Positives = 371/688 (53%), Gaps = 43/688 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+ + TF  + +     L ++            DLLFY P S+ ++   P ++E+ +  
Sbjct: 9   LFSSVKTFINIREDTVSALKRL------GINNIRDLLFYLPVSYQNKILSPNLTEVRDGD 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+     + +  +   +  +P KI  ++ TG + L+FF++    + N    G    ++GK
Sbjct: 63  IIQTE-IVVESINLPKKSSQPLKITASNDTGSLLLVFFHKPPPFIFNKLQVGTSHIISGK 121

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++   + + + HP +I +         IE +YSL   LS       I++A+       + 
Sbjct: 122 VQFFDHYLQIAHPEFIVNPKLAKE---IEPIYSLTYLLSNKQLYSYIIKAIEIFEEKCKS 178

Query: 189 IEKD--------LLQKKSFPSIAEAFNIIHNPRKA------------------KDFEWTS 222
           IE          +LQ      +         P K                   ++ +  +
Sbjct: 179 IEDKEVKDYLDIILQNLQMLHVFHHCEEACMPTKQSSNVKLINSRLPQPLKGFRNDDLYT 238

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
            A+++LA  EL+A QI+LL +R Q  +  G        I   IL  + F  T  Q+  I+
Sbjct: 239 NAKKQLAAKELIANQISLLNVRTQISRRQGNIYPKAVSIQANILNELGFELTSYQKQVIE 298

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I  D S K  M+R+LQGDVGSGKTLVAL+ M   V  G QA +MAP  +LA QHYEF  
Sbjct: 299 EIECDQSDKIEMMRLLQGDVGSGKTLVALLTMVNVVATGFQATLMAPTDLLANQHYEFFV 358

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           K  +NT I V ++TG +    R+  + ++ + +  I++GTHALFQ+ + + KL  +++DE
Sbjct: 359 KALKNTNIRVGLLTGKILGTARKNIMIQLDNDEIDILVGTHALFQEKVSFKKLGYIVIDE 418

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           QHRFGVQQRL L  K   P VL+MTATPIPR+L LT  GD+ ISK+  KP  R PI T  
Sbjct: 419 QHRFGVQQRLNLINKGVNPDVLVMTATPIPRSLALTMFGDMTISKLMGKPKSRLPIATNT 478

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV------VERFNSLHEHFTS 516
           + +N+I+ +I  +   L  G++ YWICP IE+ ++            + RFNS+   +  
Sbjct: 479 MSVNKIEHIIVAINKKLIAGERVYWICPLIEQGEKETSEEDSLLMDVMNRFNSIDNIYQG 538

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
              IIHG+M +  K+ +M  FK G  K+L+ATTVIEVGID+ +A++IIIENAE FGLAQL
Sbjct: 539 YTGIIHGKMKNEQKDQIMKQFKEGEIKILVATTVIEVGIDIPEATLIIIENAEQFGLAQL 598

Query: 577 HQLRGRVGRGEEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           HQLRGRVGRG   S CILLY+P  L K +  R  ++K T DGF IAE+DLK R  GEILG
Sbjct: 599 HQLRGRVGRGSLQSYCILLYNPKRLRKVARGRFEIMKQTNDGFYIAEQDLKLRGSGEILG 658

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +KQSG   F  A       LL  A K A
Sbjct: 659 VKQSGEIAFFFADLADDYDLLLKAHKFA 686


>gi|58697197|ref|ZP_00372606.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58536484|gb|EAL59876.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 559

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 239/557 (42%), Positives = 333/557 (59%), Gaps = 7/557 (1%)

Query: 42  IDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI 101
           +DLLFY P S++DR     + +      +T    + +H S   + R PYKI++   +  I
Sbjct: 1   MDLLFYRPLSYVDRSK--SLPDAQVGEFITFIAKVYEHQSPTFRGR-PYKIVVESESQYI 57

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVY 160
            ++FF    + L  +F  G  + ++GK++K      + HP Y+  + +Q      IE VY
Sbjct: 58  FIVFFNYSVKYLYKLFPIGASVIISGKLEKFAEHWQITHPDYVSLDINQFKKIACIEPVY 117

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
            L  G++      II   L  LP LPEWI+  L+++K + S  E+   +H P    + E 
Sbjct: 118 QLCRGITNKRIGNIISSNLKELPDLPEWIDDTLIKQKKWLSWRESIIKLHRPSSLAEAE- 176

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
               R+RLAYDEL A Q+AL L RK   KE G    +  K  +++L  + F  T  Q  A
Sbjct: 177 --VCRKRLAYDELFAYQLALKLARKNHVKERGREFIILSKYKEQVLNELSFQLTNDQTRA 234

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I +I +    K RM+ +LQGDVGSGKT+VAL AM   VE   QA +MAP  ILA+QHY +
Sbjct: 235 IDEISERQKSKYRMISLLQGDVGSGKTVVALFAMINVVENNMQAALMAPTTILAEQHYNW 294

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           I++    T I V ++TG   +  R+  +  +A G  +I+IGTHALFQ ++ +  L L ++
Sbjct: 295 IEEVLSCTDIKVALLTGKTSRKERKIIMNELASGVLNIVIGTHALFQANVTFKNLGLAVI 354

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQ RFGV QR +L  K     +L +TATPIPRTL     GD++ S + EKP  R PIKT
Sbjct: 355 DEQQRFGVMQRNRLVGKGENADILFVTATPIPRTLQQAMYGDVECSILKEKPKSRLPIKT 414

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           V + I+R+ +VIE+LK  ++ G+KAYWICP IEE +E+N  +   RF  L + F   + I
Sbjct: 415 VTMNISRVPDVIEKLKGAINRGEKAYWICPYIEENEETNIAAAEMRFQELQKTFLDKVGI 474

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG+++   K+ VM SFK     LL+ATTVIEVGIDV DA+I+IIENAE FGL+QLHQLR
Sbjct: 475 IHGKLTQEQKDQVMFSFKRNEFSLLVATTVIEVGIDVPDATIMIIENAEQFGLSQLHQLR 534

Query: 581 GRVGRGEEISSCILLYH 597
           GRVGRG + S C+LLY 
Sbjct: 535 GRVGRGNKPSFCVLLYD 551


>gi|325963736|ref|YP_004241642.1| ATP-dependent DNA helicase RecG [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469823|gb|ADX73508.1| ATP-dependent DNA helicase RecG [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 755

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 237/749 (31%), Positives = 369/749 (49%), Gaps = 83/749 (11%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           +GK+ +  + K +       T    LL Y P  +++R     I+EI  +  VT+   +  
Sbjct: 13  IGKRSAAVIEKHL-----GITTVEGLLNYFPRRYMNRGELTPITEIPRDEDVTLIARVLS 67

Query: 79  HSSFQLQKRRPYK--ILLNDGTG------------------EITLLFFYRKTEMLKNVFF 118
            ++ ++Q RR     ++++D  G                   + + FF       +    
Sbjct: 68  SNTRRMQARRGTITDVVVSDDDGKQGLRLVGGTDYRGKAPGTLKISFFNGYKAQAE--LL 125

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD--------VNFPLIE-AVYSLPTGLSVD 169
            GR+   +GK+   K  + + +P Y   +                +   VY     L   
Sbjct: 126 PGRRALFSGKVTSFKGTLGLTNPEYQLLDDDPFSEDGRDPEKIAAMPIPVYPATAKLPSW 185

Query: 170 LFKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER 227
             +K I   L+ + +  LP+ +   +  ++ F  +A+A+ +IH P  A D++     R R
Sbjct: 186 RIQKAISTLLATMDLESLPDPVPASIALREKFMPVADAYRLIHEPESASDWQQA---RRR 242

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQ 286
             Y E L  Q AL   R Q   E           +     R++PF+ T  Q +  + +  
Sbjct: 243 FRYQEALVLQSALARRRAQLASEEATARRPIPDGLLAGFDRSLPFTLTAGQAAVGETLRA 302

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           ++++   M R+LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LA QH+E I++   
Sbjct: 303 ELARDVPMNRLLQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHFESIRRTLG 362

Query: 347 NT------------QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
                          + V ++TG+MP A R++AL   A G A I+IGTHAL  D++ +Y 
Sbjct: 363 PLSGDGLLGGMDGASVQVTLLTGSMPTAARKQALLDAASGTAGIVIGTHALLSDNVSFYD 422

Query: 395 LILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           L L++VDEQHRFGV+QR  L  KA   PH+L+MTATPIPRT+ +T  GD++ S + E PA
Sbjct: 423 LGLIVVDEQHRFGVEQRDALRAKARKPPHLLVMTATPIPRTVAMTVFGDLETSVLDELPA 482

Query: 454 GRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---- 505
           GR PI T ++ +      +  +  R +  +  G + Y +CP+I    + +F         
Sbjct: 483 GRAPIATHLVGLAENPGWVRRIWARAREEIDAGHQVYVVCPRIGTDDDGDFSPGEAAPAA 542

Query: 506 ----------------RFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                               L E    S   +A +HGR     K  VM+ F     KLL+
Sbjct: 543 ADADDDSGRELASVTGVVEHLLEEPALSGVPLAPLHGRQEPDMKFGVMEDFAANRIKLLV 602

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG+DV +A++++I +A+ FG++QLHQLRGRVGRG    +C+L+        S  
Sbjct: 603 STTVIEVGVDVHNATLMVILDADRFGISQLHQLRGRVGRGGLPGTCLLVTALEPGHPSRR 662

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKH 665
           RL  +  T DGF ++EEDLK R+EG+ILG  QSG      + +   H  ++  AR+DA+ 
Sbjct: 663 RLEAVAATTDGFALSEEDLKLRREGDILGASQSGGRSTLKLLRVLEHGDVIARAREDAQQ 722

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           I+  DPDL++    +  I  YL    EAF
Sbjct: 723 IVGGDPDLSANPELADAIENYLNPEKEAF 751


>gi|258652096|ref|YP_003201252.1| ATP-dependent DNA helicase RecG [Nakamurella multipartita DSM
           44233]
 gi|258555321|gb|ACV78263.1| ATP-dependent DNA helicase RecG [Nakamurella multipartita DSM
           44233]
          Length = 760

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/769 (28%), Positives = 362/769 (47%), Gaps = 91/769 (11%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL     +G + +  L+              DLL Y+P  +  R     + ++    
Sbjct: 6   LDTPLKEL--IGARTAGRLA-----DKLELATVGDLLRYYPRKYDQRGRLTDLGKLVVGE 58

Query: 69  IVTITGYISQHSSFQLQK--------------RRPYKILLNDGTGEITLLFFYRKTEMLK 114
             T+   + +    +L                +   K+++ D   ++T  FF +      
Sbjct: 59  RATVWARVVKVVEKELGHRGPGRGARGRGGGVKHITKVVIGDDHRQLTCTFFNQYHW--T 116

Query: 115 NVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE---------------AV 159
                G     +GKI K +  + M  P     +    +    E                V
Sbjct: 117 KTLPPGTDAMFSGKITKFQTELQMSSPSVAILSDGRGSDGSTENNPIEIIESFPGGVIPV 176

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
           Y L  G++  + ++ +   L   P + + + + LL ++    +A A + IH PR  +  +
Sbjct: 177 YPLVEGVTQAVLQRSVRLLLDLGPRIEDPVPEVLLAQRGLVDLATALHDIHRPRTQEHLD 236

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQE 278
                + RL YDE L+ Q+ L   +   ++    P   V G +      N+PF  T  Q 
Sbjct: 237 RA---KARLRYDEALSVQLVLARRKALAREFPAEPCPRVPGGLLDAFDANLPFELTAGQR 293

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +  + I  D++  + M R+LQG+VGSGKT+VAL AM   +++G QAV++AP  +LA QH 
Sbjct: 294 AVGEAIGTDLATIHPMNRLLQGEVGSGKTVVALRAMLQVIDSGRQAVMLAPTEVLAAQHA 353

Query: 339 EFIKKYTQNTQI-----------IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             +++                   + ++TG++P   R+ AL  IA GQA I++GTHAL  
Sbjct: 354 RSLRQVLGPLGRGGELGAPAESTAITLLTGSLPAKARKLALLTIASGQAGIVVGTHALLS 413

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDID 444
           + + +  L L++VDEQHRFGV+QR  L  K    + PHVL+MTATPIPRT+ +T  GD+D
Sbjct: 414 EGVFFANLGLIVVDEQHRFGVEQRHALRTKHPDGSPPHVLVMTATPIPRTVAMTVFGDLD 473

Query: 445 ISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQI-------- 492
            S + E P GR PI T ++P       ++   +R++  + +G +AY +CP+I        
Sbjct: 474 TSTLDELPRGRSPIGTTVVPAAEKPAWVERAWQRIREEVGKGHQAYVVCPKIGDGSGEDA 533

Query: 493 ------------------EEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKES 532
                              E       +V +    L +   +   + ++HGR+   +K++
Sbjct: 534 AGELFEDGSVAETDSDAEGESTRRAPLAVTQVAAMLRDGPLADLRVGVLHGRLVPAEKDA 593

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM +F  G   +L+ATTVIEVG+DV +A++++I +AE FG++QLHQLRGRVGRG     C
Sbjct: 594 VMTAFAAGELDVLVATTVIEVGVDVPNATMMVIMDAERFGMSQLHQLRGRVGRGSAPGIC 653

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPEL 651
           +L+   P       RL+ +  T DGF +AE DL+ R+EG +LG +Q+G            
Sbjct: 654 LLVTESPEGTPGRFRLAAVAATTDGFELAEADLELRREGNVLGTEQAGKSTALRQLSLLR 713

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
              ++E AR DA  ++  DP +    G +  +   + + ++   ++  G
Sbjct: 714 DRDVIEDARTDAAGLVGDDPAMARWPGLADMVSAVIAEQDQ--DYLDKG 760


>gi|322434362|ref|YP_004216574.1| ATP-dependent DNA helicase RecG [Acidobacterium sp. MP5ACTX9]
 gi|321162089|gb|ADW67794.1| ATP-dependent DNA helicase RecG [Acidobacterium sp. MP5ACTX9]
          Length = 779

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 241/784 (30%), Positives = 374/784 (47%), Gaps = 102/784 (13%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+   + VG + +  L++             DLL++ P  + DR     + ++    
Sbjct: 5   LSTPIQFVKRVGDRVAENLAR------RGVETVEDLLYHLPFRYEDRLNPKPLDQMKPGE 58

Query: 69  IVTITGYISQHSSFQLQKRRPYKILL------NDGTG--------EITLLFFYRKTEMLK 114
           + ++ G +   +    +    +++ L       +G G         I  L+F      L+
Sbjct: 59  MASLLGDVRGSTLLTTRGPAIFELTLGLVPLGAEGLGFGGRISQPTIKCLWFNG--TYLR 116

Query: 115 NVFFEGRKITVTGKIKKLK----NRIIMVHPHYIFHNSQDVNFP----------LIEAVY 160
             F  G+++ V GK++  +     R  ++ P +        + P           I  VY
Sbjct: 117 ERFRLGQQVAVYGKLEASRSGGSGRFKLIQPQFEILPGPGASGPDAEFAALEMGRIVPVY 176

Query: 161 -------SLPTGLSVDLFKKIIVEALSRL----PVLPEWIEKDLLQKKSFPSIAEAFNII 209
                       L+    ++++      L      + E +   L ++ + P+  EA   I
Sbjct: 177 ESLGGTTPWGAKLTSKWTRRVMWSVFEELIESGAEIEETLPAPLRERLALPNRLEALKSI 236

Query: 210 HNPRK----AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI 265
           H P      A      +P  +RL ++E    ++ L L R++ ++ IG       ++   I
Sbjct: 237 HFPEAGTPVADLMTARTPGHKRLIFEEFFYLELGLELKRRKLRERIGTRFETTDQVRAAI 296

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
            + +PF PT +Q+  + +I+ DM +   M R+LQGDVGSGKT+VA+ A   A+E G QA 
Sbjct: 297 RQVLPFHPTTAQKRVLAEIVGDMKKDQPMRRLLQGDVGSGKTIVAMQAALVAIENGFQAA 356

Query: 326 IMAPIGILAQQHYEFIKKYTQN-------TQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           +MAP  ILA QHY   +K   +           V ++TG++    +R++  RI  G+AH+
Sbjct: 357 LMAPTEILATQHYLSARKLLADKLSPLTGKPYRVTLLTGSLDLDRKRESRGRIMRGEAHL 416

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA------TAPHVLLMTATPIP 432
            IGTHAL ++ + +  L LVIVDEQHRFGVQQR KL +K         P VL+MTATPIP
Sbjct: 417 AIGTHALIEEKVDFANLGLVIVDEQHRFGVQQRFKLMKKPNAEGVMADPDVLVMTATPIP 476

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL LT  GD+D+S I E P GR PI T         +V E ++  ++ G +AY + P I
Sbjct: 477 RTLALTIYGDMDVSVIDELPPGRTPIVTRRTSEASSAKVWEFVRKQVALGHQAYIVYPII 536

Query: 493 EEKKESNF----------------------------------RSVVERFNSLHEHFTS-- 516
           E   +                                     RS  + F+ L        
Sbjct: 537 EGANDDQPELDFAPEPSAQDEPTPTKGKRGKKTESLFPKAKLRSATQSFDELRAGPLQGL 596

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            + ++HGRMS  DKE  M  F+ G   +LIATTVIEVG+DV +AS+++I++AE FGLAQ+
Sbjct: 597 RVGLLHGRMSADDKEVAMRRFQRGETDVLIATTVIEVGVDVPNASVMVIDHAERFGLAQM 656

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG   S CIL+    +S+++  RL  + +T++GF +AE DL QR  GE  G 
Sbjct: 657 HQLRGRVGRGAAKSYCILMTGDKVSESAELRLDAMVHTQNGFELAELDLAQRGPGEFFGT 716

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ-DPDLTSVRGQSIRILLYLYQYNEAFQ 695
           +Q+GMP+F +A       +LEIA+ +A       DP LT     +        Q+   + 
Sbjct: 717 RQAGMPEFRVADLGRDREVLEIAKSEAARFAQSPDPTLT-PEQITEVWDRLKQQWQRRYA 775

Query: 696 FIRA 699
            + A
Sbjct: 776 LVEA 779


>gi|119961125|ref|YP_948203.1| ATP-dependent DNA helicase RecG [Arthrobacter aurescens TC1]
 gi|119947984|gb|ABM06895.1| putative ATP-dependent DNA helicase RecG [Arthrobacter aurescens
           TC1]
          Length = 751

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 238/756 (31%), Positives = 379/756 (50%), Gaps = 81/756 (10%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L  PL   R +GK+ +  + K +    A       LL Y P  ++ R     I+++  +
Sbjct: 4   ELELPLE--RRIGKRSAAVIDKHLGLKTAGA-----LLNYFPRRYLSRGELTPINKLPLD 56

Query: 68  RIVTITGYISQHSSFQLQKRRPYK--ILLNDGTG------EITLLFFYRKTEMLKNVFFE 119
             VT+   +  +S+ Q++ RR     +++ D  G       + + FF       K     
Sbjct: 57  EEVTLIARVLSNSTRQMRARRGSITDVVVTDEAGGGGVPGTLKVSFFNGFRA--KAELLP 114

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---------VYSLPTGLSVDL 170
           GR+   +GK+ +    + + +P ++  +        ++          VY     L+   
Sbjct: 115 GRRAMFSGKVTRYGGALGLTNPDFLLLDEDPEAEGSVDPEKLAAMPIPVYPATAKLTSWS 174

Query: 171 FKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
             K+I   L  + +  L + + + ++++ +  S+AEA+ +IH+P  AKD++     +ER 
Sbjct: 175 IHKVITALLQTMDLDSLEDPLPESIVRRDALLSVAEAYRLIHSPDIAKDWQRA---QERF 231

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQD 287
            Y E L  Q AL   R Q   E              K  +N+PF+ T  Q +  K + ++
Sbjct: 232 RYQEALVLQTALARRRAQLAAEEATARRPRADGLLSKFDQNLPFTLTAGQSAVGKTLAEE 291

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           + +   M R+LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LA QH+  I+K    
Sbjct: 292 LGRDTPMNRLLQGEVGSGKTIVALRAMLQVVDAGGQAALLAPTEVLAAQHFHSIRKTLGP 351

Query: 348 TQ-------------------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
                                + V ++TG+MP A R++A+   A G A I+IGTHAL  D
Sbjct: 352 LARDHIFGGAGMLGGDSTQEAVQVTLLTGSMPTAARKQAMLDAASGNAGIVIGTHALLSD 411

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              +  L L++VDEQHRFGV+QR  L  KA   PH+L+MTATPIPRT+ +T  GD++ S 
Sbjct: 412 KTSFQDLGLIVVDEQHRFGVEQRDALRAKAQRPPHLLVMTATPIPRTVAMTVFGDLETSI 471

Query: 448 ITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQI----------- 492
           + E PAGR PI T ++ +      +D + +R +  +  G + Y +CP+I           
Sbjct: 472 LDELPAGRAPISTHVVGLAENPGWVDRIWKRSREEVDSGHQVYVVCPKIGSDDDGDFSPG 531

Query: 493 ----------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKN 539
                     +E       SV     SL +    +   +A +HGR     K   M SF +
Sbjct: 532 EAEPSDAELADEGPARELASVTAVVESLLQEPALAGVPVAPLHGRQDPQVKSETMASFAS 591

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              K+L++TTVIEVG+DV +A++++I +A+ FG++QLHQLRGRVGRG    +C+L+    
Sbjct: 592 NNTKVLVSTTVIEVGVDVHNATLMVILDADRFGISQLHQLRGRVGRGGLPGTCLLVTTLE 651

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEI 658
               S  RL  + +T DGF +++EDLK R+EG+ILG  QSG      + +   H+ ++  
Sbjct: 652 PGHPSRRRLDAVASTTDGFELSQEDLKLRREGDILGASQSGGRSTLKLLRVLEHEEIIAR 711

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           AR DA+ ++++DP L      +  I  YL    EAF
Sbjct: 712 ARTDAQGLVSEDPALDHQPVLAAAIDEYLNPEKEAF 747


>gi|239947193|ref|ZP_04698946.1| type III restriction enzyme, res subunit family [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239921469|gb|EER21493.1| type III restriction enzyme, res subunit family [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 746

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 265/722 (36%), Positives = 384/722 (53%), Gaps = 76/722 (10%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+ + TF  + +     L ++            DLLFY P S+ ++   P ++E+ +  
Sbjct: 9   LFSSVKTFINIREDTVSALKRL------GINNIRDLLFYLPVSYQNKILSPNLTEVRDGE 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+     + +  +   +  +P KI  ++ TG + L+FF++    + N    G    ++GK
Sbjct: 63  IIQTE-IVIESINLPKKSHQPLKITASNDTGSLLLVFFHKPHPFIFNKLKIGTSHIISGK 121

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++   + + + HP +I +         IE +YSL   LS       I++A+       + 
Sbjct: 122 VQFFDHYLQIPHPEFITNPKLAKE---IEPIYSLTYLLSNKQLYSYIIKAIEIFEEKCKS 178

Query: 189 IEKD--------LLQKKSFPSIAEAF------------------NIIHNPRKA-KDFEWT 221
           IE          +LQ      ++EA                   + +  P    K ++ T
Sbjct: 179 IEDKEVKDYLDIILQNLKMLHVSEAVIPWLDHGIHNNNWIPWSSHGMTTPSNTIKLWDDT 238

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
             A+++LA  EL+A QI+LL +R Q  +  G        I   IL  + F  T  Q+  I
Sbjct: 239 ESAKKQLAAKELIANQISLLNVRTQISRRQGNIYPKAAAIQANILNELGFELTSYQKQVI 298

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           ++I  D S K  M+R+LQGDVGSGKTLVAL+ M   V+AG QA +MAP  +LA QHYEF 
Sbjct: 299 EEIEFDQSDKGEMMRLLQGDVGSGKTLVALLTMVNTVKAGFQATLMAPTDLLANQHYEFF 358

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            K  +NT I V ++TG +  + R+  + ++  G+  I++GTHALFQ+ + + KL  +++D
Sbjct: 359 VKALKNTDIRVALLTGKILGSVRKNIMLQLESGEIDILVGTHALFQEKVSFNKLGYIVID 418

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           EQHRFGVQQRL L  K   P VL++TATPIPR+L LT  GD+ ISK+  KP  R PI T 
Sbjct: 419 EQHRFGVQQRLNLINKGVNPDVLVITATPIPRSLALTMFGDMSISKLMGKPKNRLPIATN 478

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIE---------------------------- 493
            + +N+I+ +IE +   L  G++ YWICP IE                            
Sbjct: 479 TMSVNKIEHIIEAINKKLVVGERVYWICPLIEHGKPPVVIPRLDCGIQKTTYNASNFDWI 538

Query: 494 ----------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
                     E+++S    V+ RFNS+   +     IIHG+M +  ++ +M  FK G  K
Sbjct: 539 PLQARGMTPEEEEDSLLMDVMNRFNSIENIYQGYTGIIHGKMKNEQRDQIMKQFKEGEIK 598

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSK 602
           +L+ATTVIEVGIDV +A++IIIENAE FGLAQLHQLRGRVGRG   S CILLY+P  L K
Sbjct: 599 ILVATTVIEVGIDVPEATLIIIENAEQFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLGK 658

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  R  ++K T DGF IAE+DLK R  GEILG+KQSG  +F  A       LL  A K 
Sbjct: 659 VARGRFEIMKQTNDGFYIAEQDLKLRGSGEILGVKQSGEIEFFFADLADDYDLLLKAHKF 718

Query: 663 AK 664
           A+
Sbjct: 719 AE 720


>gi|299139590|ref|ZP_07032764.1| ATP-dependent DNA helicase RecG [Acidobacterium sp. MP5ACTX8]
 gi|298598518|gb|EFI54682.1| ATP-dependent DNA helicase RecG [Acidobacterium sp. MP5ACTX8]
          Length = 818

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 237/808 (29%), Positives = 373/808 (46%), Gaps = 125/808 (15%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L  P+   + +G + +  L++             DLL++ P  + DR +   +S     
Sbjct: 20  ELTTPVKYIKRIGDRVAANLAE------RGVETVEDLLYHLPFRYEDRLHPKPLSGYHPG 73

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILL------NDGTG--------------EITLLFFY 107
            + ++ G +      + +    +++ +       D                  +  ++F+
Sbjct: 74  DMASLVGEVRGTVLLRTRSAPIFEMTVGIKPPPADSEAAMSGLLRPPPAVLETVKCMWFH 133

Query: 108 RKTEMLKNVFFEGRKITVTGKIKKLKNR-----------IIMVHPHYIFHNSQDV----- 151
                L++ F  G+ I + GK++  ++              M+ P +             
Sbjct: 134 G--TYLRDKFRPGQMIALYGKLEGSRSGNALNAVPGATQFKMIQPTFEILPDASATGEDA 191

Query: 152 -----NFPLIEAVY-------SLPTGLSVDLFKKIIVEALSRLPV----LPEWIEKDLLQ 195
                    I  VY            L+    ++++      L        E + + L Q
Sbjct: 192 EFTMLEMGRIVPVYESLGGKTPWGAKLTSRWLRRVMWTVFRELTESDTKADETLPQALRQ 251

Query: 196 KKSFPSIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           +   P   EA   +H P       +     +PA  RL ++E    ++ L L R++ +   
Sbjct: 252 RLGLPGRMEALQALHFPPAGTPITELMSARTPAHRRLIFEEFWYLELGLELKRRKLRTRA 311

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G     + K+ + + + +PF PT +Q+  + +I+ DM     M R+LQGDVGSGKT+VAL
Sbjct: 312 GTAFLTDEKVREALKQVLPFKPTSAQKRVLGEIVTDMRASRPMRRLLQGDVGSGKTIVAL 371

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-------TQIIVEIITGNMPQAHR 364
            A   A+E G QA +MAP  ILA QHY   +K   +           V ++TG++ +  +
Sbjct: 372 QAALVAIENGYQAAMMAPTEILATQHYLSARKLLADAISPHTGRPYRVALLTGSLDERAK 431

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK------A 418
           R    RI  G+  + IGTHAL ++ + +  L LVIVDEQHRFGVQQR KL +K      A
Sbjct: 432 RDVRGRIFRGETDLAIGTHALVEEKVDFENLGLVIVDEQHRFGVQQRFKLMRKPGANGVA 491

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           T P VL+MTATPIPRTL LT  GD+++S I E P GR PI T  +P  R  EV   ++  
Sbjct: 492 TEPDVLVMTATPIPRTLALTVYGDLEVSIIDELPPGRTPIVTRRMPEERSSEVWNFVRKQ 551

Query: 479 LSEGKKAYWICPQIEEKKESNF-------------------------------------- 500
           +  G++AY + P IE +K+                                         
Sbjct: 552 IVAGRQAYIVYPVIEGEKDDQPELDFAQDSSESVSQQVSESAALPKKQKNGKKASSARKS 611

Query: 501 ------RSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 RS  E F+ L     S   + ++HGRMS  DKE  M  FK G   +LI+TTVIE
Sbjct: 612 ADRVKLRSATEMFDELSSGALSGMKLGLLHGRMSADDKEVTMARFKRGEIDVLISTTVIE 671

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV +A++++IE+AE FGLAQ+HQLRGRVGRG   S C+LL    +S  +  RL  + 
Sbjct: 672 VGVDVPNATVMVIEHAERFGLAQMHQLRGRVGRGAAKSYCVLLTGSSVSPEAEQRLDAMV 731

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ-DP 671
            T++GF +AE DL+QR  GE  G +Q+G+P+F +A        LE+A+ +A H +   DP
Sbjct: 732 RTQNGFELAEFDLEQRGPGEFFGTRQTGLPEFHVASLARDREFLELAKSEAAHFVEAPDP 791

Query: 672 DLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           ++     +++       Q+   +  + A
Sbjct: 792 NIPRAEIEAV-WARLKQQWQRRYGLVEA 818


>gi|146329601|ref|YP_001209906.1| ATP-dependent DNA helicase RecG [Dichelobacter nodosus VCS1703A]
 gi|146233071|gb|ABQ14049.1| ATP-dependent DNA helicase RecG [Dichelobacter nodosus VCS1703A]
          Length = 684

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 237/668 (35%), Positives = 367/668 (54%), Gaps = 23/668 (3%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN 95
           A+     DLL + P  + D      ++++ + +   + G + + +  Q  +R    +LL 
Sbjct: 24  ADVKTIRDLLLHLPQRYEDHSRLTAMNDLQDGQTAFVHGQVIR-AEIQQYRRPVLTVLLR 82

Query: 96  D-GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP 154
           D   GE+ L +F+     +K  F  GR     GKI +      M HP   +  ++  + P
Sbjct: 83  DRAGGELYLRYFHFYPNQIK-TFRAGRWGLFYGKINRSFALPEMSHPEITWLTNE--HLP 139

Query: 155 LIE----AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH 210
            +      +YS   GL+   +++ I + L +L V+ E    D L +K F S+A+A  I+H
Sbjct: 140 PLPKTWYPIYSSVQGLTQAHWQQAINDVLKQL-VISET---DALTQKGFLSLAQALRILH 195

Query: 211 NPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
            P    D         PAR+RL  +EL A Q++    R   +++    +     + Q+ +
Sbjct: 196 QPPLTADPNALLLPQHPARQRLIMEELCAHQLSFTQARMHQQQKTAPELPENSVLIQQFI 255

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             +PF+ T +Q+    +I  D+++   M+R++QGDVGSGKT++AL+A   A+ AG Q   
Sbjct: 256 AALPFTLTAAQKRVHAEIAADLAKNAPMMRLVQGDVGSGKTVIALLAALQAIAAGKQVAF 315

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  +LA+QH   +KK  + + I   ++TG +    +R  L+ I  G+A +I+GTHALF
Sbjct: 316 MAPTELLAEQHAANMKKLLKLSAIEPVLLTGKLSAKTKRARLKAIERGEAALIVGTHALF 375

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDI 443
           Q  + Y++L L+I+DEQHRFGV QR +L  K+     PH L++TATPIPRTL ++  G +
Sbjct: 376 QSQVNYHRLALIIIDEQHRFGVHQRFQLQDKSHEEWAPHQLILTATPIPRTLAMSLYGKL 435

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
             S I + PAGRK I+T ++  +  D +I RL  V  +G++AYW+CP IEE       + 
Sbjct: 436 STSIIDQLPAGRKSIQTAVMSNHHRDTLIARLGAVCRKGQQAYWVCPFIEESDVFVCENG 495

Query: 504 VERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
                 L        +  +HG++S   +   M++F  G   +L+ATTVIEVG+DV +A++
Sbjct: 496 EAMTAYLQRSLPDLRVEFVHGKLSSDARREKMEAFAAGAVDILVATTVIEVGVDVANATL 555

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           +IIENAE FGL+QLHQLRGRVGRG + S C+LLY  PL +N+  RL+V++ T DGF IAE
Sbjct: 556 MIIENAERFGLSQLHQLRGRVGRGSQQSYCVLLYQAPLGENAQRRLAVMRATTDGFQIAE 615

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           EDL  R  GE+LG KQ+G   F +A      + L    +  +  L +D    +V  +  R
Sbjct: 616 EDLLLRGAGELLGTKQTGENGFYLADLTRDYAHLPHVAQWVETWLCEDKAFAAVLQK--R 673

Query: 683 ILLYLYQY 690
            L     Y
Sbjct: 674 WLHDKTHY 681


>gi|224532134|ref|ZP_03672766.1| ATP-dependent DNA helicase RecG [Borrelia valaisiana VS116]
 gi|224511599|gb|EEF82005.1| ATP-dependent DNA helicase RecG [Borrelia valaisiana VS116]
          Length = 686

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 216/668 (32%), Positives = 343/668 (51%), Gaps = 26/668 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR---PKI 61
           FL+     L    G+G+K    L+ +        +   DL+ + P  + DR      P  
Sbjct: 2   FLHEFEYELKGIGGLGEKGVERLNNLQ------ISNVKDLIEFFPVKYEDRQNIQTFPDF 55

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFF 118
           S++    ++T+   +  H  F    ++  K+    +ND   EI L         L+NVF 
Sbjct: 56  SKVKSCDMMTVF-TVVGHKKFGDSSKKNLKLTARSINDEPFEILL----FNRAFLENVFR 110

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
             +K  +  K        +    ++     +     F  I  VYSL  GL+       + 
Sbjct: 111 IDKKFYIYSKFTYNDYSGLWSCSNFDSEVFSDNPERFKKILPVYSLTEGLTSKKISLYVK 170

Query: 177 EALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           EAL       +  + K L++K S  S++EA   IH P   +  E    A++ L Y E+  
Sbjct: 171 EALEYFFKFGQTDVPKFLIEKYSLLSLSEALKEIHFPSSLEMLE---KAKKTLIYREIFL 227

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q       +  K       ++   + ++++ ++PF  T+ Q  +I +I  D+     M 
Sbjct: 228 LQFFS--RYRSSKVLFREKKHLSKDLLERVVSSLPFELTEDQRISIDEIFSDLGSSKPMN 285

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++    +EAG Q   MAP  +LA+QHY+ +     +  + V ++
Sbjct: 286 RLLQGDVGSGKTLVALLSGLPLIEAGYQVAFMAPTDLLARQHYDNLSNILSSFNVSVTLL 345

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++ +  + +ALE I  G + +IIGTHA+F +S ++ +L  VI+DEQH+FGV QR +L 
Sbjct: 346 TGSLKKKDKDQALESIKSGTSGLIIGTHAIFYESTEFKRLAYVIIDEQHKFGVVQREELK 405

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +K     +LLM+ATPIPR+  LT  GD++IS I   P GR PI T +      D+V E L
Sbjct: 406 KKGEGVDILLMSATPIPRSFALTLFGDLEISFIKTLPKGRLPITTYLAKHGNEDKVYEFL 465

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVM 534
           K  L +G + Y++ P I   ++   + V      L E F+  +  ++H ++    KE +M
Sbjct: 466 KKELIKGHQVYFVYPLISSSEKFELKDVNNMCLKLKEVFSEYVVDMLHSKLPSDLKEEIM 525

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F +    +L+AT+VIEVGID  +A+ +++E+AE FGL+ LHQ+RGRVGRG   S   L
Sbjct: 526 KNFYSKKVDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRVGRGNLQSFFFL 585

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL+     RL  +K   DGF IAEEDL+ R  G + G++Q+G  K  I+       
Sbjct: 586 LYKEPLTSAGKFRLKTIKENLDGFKIAEEDLRLRGPGNLFGLEQAGYLKLKISNFVDDRD 645

Query: 655 LLEIARKD 662
           ++ + R++
Sbjct: 646 IIVLIREE 653


>gi|238650653|ref|YP_002916505.1| ATP-dependent DNA helicase [Rickettsia peacockii str. Rustic]
 gi|238624751|gb|ACR47457.1| ATP-dependent DNA helicase [Rickettsia peacockii str. Rustic]
          Length = 713

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 259/688 (37%), Positives = 375/688 (54%), Gaps = 43/688 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+ + TF  + +     L ++            DLLFY P S+ ++   P ++E+ ++ 
Sbjct: 9   LFSSVKTFINIREDTVSALKRL------GINNIRDLLFYLPVSYQNKILSPNLTEVRDDD 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+     + +  +   +  +P  I  ++ TG + L+FF++    + N    G    ++GK
Sbjct: 63  IIQTE-IVVESINLPKKSSQPLTITASNDTGSLLLVFFHKPPPFIFNKLQVGTSHIISGK 121

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++   + + + HP +I +         IE +YSL   LS       I++A+       + 
Sbjct: 122 VQFFDHYLQIAHPEFIVNPKLAKE---IEPIYSLTYLLSNKQLYSYIIKAIEIFEEKCKS 178

Query: 189 IEKD--------LLQKKSFPSIAEAFNIIHNPRKA------------------KDFEWTS 222
           IE          +LQ      +         P K                   ++ +  +
Sbjct: 179 IEDKEVKDYLDIILQNLQMLHVFHHCEEACMPTKQSSNVKLINSRLPQPLKGLRNDDLYT 238

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
            A+++LA  EL+A QI+LL +R Q  +  G        I   IL  + F  T  Q+  I+
Sbjct: 239 NAKKQLAAKELIANQISLLNVRTQISRRQGNIYPKAVSIQANILNELGFELTSYQKQVIE 298

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I  D S K  M+R+LQGDVGSGKTLVAL+ M   V  G QA +MAP  +LA QHYEF  
Sbjct: 299 EIECDQSDKIEMMRLLQGDVGSGKTLVALLTMVNVVATGFQATLMAPTDLLANQHYEFFV 358

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           K  +NT I V ++TG +  A R+  + ++ + +  I++GTHALFQ+ + + KL  +++DE
Sbjct: 359 KALKNTNIRVGLLTGKILGAARKNIMIQLDNDEIDILVGTHALFQEKVSFKKLGYIVIDE 418

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           QHRFGVQQRL L  K   P VL+MTATPIPR+L LT  GD+ ISK+  KP  R PI T  
Sbjct: 419 QHRFGVQQRLNLINKGVNPDVLVMTATPIPRSLALTMFGDMTISKLMGKPKSRLPIATNT 478

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEE------KKESNFRSVVERFNSLHEHFTS 516
           + +N+I+ +I  +   L  G++ YWICP IE+      +++S    V+ RFNS+   +  
Sbjct: 479 MSVNKIEHIIVAINKKLIAGERVYWICPLIEQGGKETPEEDSLLMDVMNRFNSIDNIYQG 538

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
              IIHG+M +  K+ +M  FK G  K+L+ATTVIEVGID+ +A++IIIENAE FGLAQL
Sbjct: 539 YTGIIHGKMKNEQKDQIMKQFKEGEIKILVATTVIEVGIDIPEATLIIIENAEQFGLAQL 598

Query: 577 HQLRGRVGRGEEISSCILLYHPP-LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           HQLRGRVGRG   S CILLY+P  L K +  R  ++K T DGF IAE+DLK R  GEILG
Sbjct: 599 HQLRGRVGRGSLQSYCILLYNPKRLRKVARGRFEIMKQTNDGFYIAEQDLKLRGSGEILG 658

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +KQSG   F  A       LL  A K A
Sbjct: 659 VKQSGEIAFFFADLADDYDLLLKAHKFA 686


>gi|323359687|ref|YP_004226083.1| RecG-like helicase [Microbacterium testaceum StLB037]
 gi|323276058|dbj|BAJ76203.1| RecG-like helicase [Microbacterium testaceum StLB037]
          Length = 729

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 220/721 (30%), Positives = 345/721 (47%), Gaps = 57/721 (7%)

Query: 14  STFRG-VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           S   G +G K +    +             +LL ++P  +  R     IS +     VTI
Sbjct: 8   SRLDGAIGGKTAAAFDR-----AFGMKTVGELLEHYPRRYARRGELTPISTLPLGEPVTI 62

Query: 73  TGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
              +   S  ++Q RR    +++++DG G ++L FF +           GR+   +GK+ 
Sbjct: 63  VAEVVSASERRMQNRRGSLLEVVISDGDGRLSLTFFNQ--PWRLKDLTPGRRGIFSGKVG 120

Query: 131 KLKNRIIMVHPHYIFHN-------SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           + + +  + +P Y   +         +V+      +Y     +   L +K I   L  L 
Sbjct: 121 EYRRQTQLTNPDYELFDDLAEARAEAEVSAKRPIPIYPATATVPSPLVQKTISLVLDALG 180

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + +  DL  ++       A   IH P    D     PA   L   E    Q ALL  
Sbjct: 181 DIDDPLPDDLRARRGLLPARTALEQIHRPEDDDDI---PPAVATLRMQEAFVLQTALLQQ 237

Query: 244 RKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           R+  +           G + ++  R +PF  T  Q+S    I  DM     M R++QG+V
Sbjct: 238 RQFVRALSATKRPAAPGGLLERFDRILPFELTPDQQSVGAQIQADMVGDWPMNRLVQGEV 297

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN---TQIIVEIITGNM 359
           GSGKTLVAL AM    E GGQ+ ++AP  +LA QH   I +        +++  ++TG +
Sbjct: 298 GSGKTLVALRAMLQVAETGGQSALIAPTEVLAAQHLRSIARMLGPELAPELMPTLLTGQL 357

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
           P A RRKA  R+A GQA I++GTHAL   +  +  L  V+VDEQHRFGV QR  L  K  
Sbjct: 358 PAAERRKAALRVASGQARIVVGTHALLSSTTTFADLGFVVVDEQHRFGVDQREALRAKGD 417

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERL 475
           +PH +++TATPIPRT+ +T  GD+D+S I   PAGR  I++ + P+    +    V +R+
Sbjct: 418 SPHTIVLTATPIPRTVAMTVFGDLDVSTIRTMPAGRAGIQSFVAPLAEKPSWFARVWDRV 477

Query: 476 KVVLSEGKKAYWICPQIE----------------------------EKKESNFRSVVERF 507
              +++G++A+ +C  I+                            ++       V    
Sbjct: 478 AEEVAQGRQAFVVCAAIDADQLAADDKTDEPADAPEGPASAAASDGQRTRWGVVQVEALL 537

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           + L       + I+HG+M   +K++VM +F  G   +L+ATTVIEVG+DV +AS ++I  
Sbjct: 538 SRLPAFTGIRVEILHGKMPSDEKDAVMQAFARGDIDVLVATTVIEVGVDVPNASTMVILE 597

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           A+ FG++QLHQLRGRVGRG     C+L+       +S  R+  +  T DGF +AE DL+ 
Sbjct: 598 ADRFGVSQLHQLRGRVGRGGLPGLCLLVTEAAPGTSSRARVDAVAATLDGFALAEVDLEL 657

Query: 628 RKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
           R EG++LG  QSG+     + +      L+  AR + + +L  DP L    G +  +   
Sbjct: 658 RGEGDVLGGAQSGVRSSLRLLRVVTDADLITEARAEGERLLADDPALQRHPGLAAALERR 717

Query: 687 L 687
           L
Sbjct: 718 L 718


>gi|313885076|ref|ZP_07818828.1| ATP-dependent DNA helicase RecG [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619767|gb|EFR31204.1| ATP-dependent DNA helicase RecG [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 674

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 211/695 (30%), Positives = 359/695 (51%), Gaps = 32/695 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   ++  +G+G K     +++            DLL++ P  F D   R  ++ I ++ 
Sbjct: 5   LNDSIAVLKGIGPKSVQAFAQL------GVVTIADLLYHLPFRFNDIQER-PLASILDQE 57

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            VT+ G +          RR  ++     L D    I ++FF +    L        + +
Sbjct: 58  KVTLKGRVITPPVVSYFGRRRSRLSFRLELEDHQ-VIQVVFFNQ--PYLNKQVALNDEKS 114

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-P 183
           + GK  + +  ++ +          D    + + VYS   GL   L  + I +AL+   P
Sbjct: 115 IYGKWDQTRQTLMGM----KVLKETD---NIFQPVYSATKGLRQSLIVQAISQALAEYGP 167

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           ++PE +   L ++    S   A   IH P+  K +E     R ++ Y E    Q  L   
Sbjct: 168 LIPEAVPSFLNERHQLMSSRAALQGIHQPQSYKQYEAA---RRKIIYQEFFDYQWQLQTA 224

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
               +++ G+ ++ + ++ +  ++ +PF  T  Q+ A+ +I  D+     M R+LQGDVG
Sbjct: 225 SFNHRQDKGLQVHYDVEVLKVFIKELPFELTSDQKKAVNEICLDLLAPYAMRRMLQGDVG 284

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA +AM A V  G Q  +M P  ILA+QHY+       + +    ++   +    
Sbjct: 285 SGKTIVAFLAMVAGVIGGYQVALMVPTEILAKQHYQNFCNLFPDLEDQTGLLISQISSKE 344

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           + +    I  G   +IIGTHAL QD++ ++KL L+++DEQHRFGV QR  L  +    ++
Sbjct: 345 KNELQLGIKKGFHQVIIGTHALIQDAVSFHKLGLLVIDEQHRFGVDQRQLLLDQNPGLNI 404

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPR+L L+  GD+ +S I   P+GR+PI+T ++   ++D++   ++ +L++ +
Sbjct: 405 LQMTATPIPRSLALSIYGDMSVSTIQSLPSGRQPIQTRLVSEKQVDKLYLHMQEILAKEQ 464

Query: 484 KAYWICPQIEEKKESNF-RSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
           + Y++ P I++ +  +   +V+     L + F    I I+HG+M+   +   M +FK   
Sbjct: 465 QIYYVLPIIDQSEHLDQVENVLNVKAKLDQVFPDYQIEILHGQMAKDQQARAMAAFKANE 524

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L+ATT++EVG+DV +A+++II++AE FGLAQLHQLRGRVGRG + S C L+ +P  +
Sbjct: 525 AQVLVATTMVEVGVDVPNATMMIIQSAERFGLAQLHQLRGRVGRGNQPSFCYLIGNPT-T 583

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +    RL ++ +  +GF I++ DLK R  G++LG +QSG+P F  A        L  AR+
Sbjct: 584 EQGKARLKIMVDESNGFQISKADLKIRGMGDVLGRQQSGLPTFKYANIIEDSDSLNQARQ 643

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
           D    L    DL     Q+ R +L         + 
Sbjct: 644 DVAWCLQHYQDL----NQNDREILNSLNQKSRIEL 674


>gi|111023475|ref|YP_706447.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
 gi|110823005|gb|ABG98289.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
          Length = 752

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 220/733 (30%), Positives = 363/733 (49%), Gaps = 81/733 (11%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           GKK +  L +       +     DLL ++P  +  +       +  E   +TI   ++  
Sbjct: 13  GKKTADALEE-----AFDIRTVEDLLRHYPHRYASQGRELAEKDPPEGEHITIIARVTSA 67

Query: 80  SSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
           +  +++ R     K++L+  T  + + FF    + +K+V   G +   +G +K  + +  
Sbjct: 68  AVVKMKNRPGSMLKVVLSTDTQNVDVTFF--SPQKVKHVIKPGVRAMFSGTVKYFRQKWS 125

Query: 138 MVHPHYIFHNSQDVNFP------------------------------------LIEAVYS 161
           + HP Y+                                               +  +Y 
Sbjct: 126 LTHPSYLILPEPRAGSEDPVVNVGRIRGAGDLAGIARASQEAGAGVDMSVFDRALIPLYP 185

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
               +      K + + L +L  + + + +++  ++    + EA   +H P   +D E  
Sbjct: 186 ATRDVESWTIMKCVRQILDQLDRVDDPLPENIRAERDLIGLDEALRSVHLPDTREDVENA 245

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
                RL +DE  A Q+ L   R    + +        G IA    + +PF  T  Q + 
Sbjct: 246 HD---RLRFDEATALQLVLARRRHDNAERVAPECPPVPGGIADVFEKMLPFQLTDGQHAV 302

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
             +I  D++Q + M R+LQG+VGSGKT+VAL AM   V+AG Q  ++AP  +LA QH   
Sbjct: 303 ADEISADLAQPHPMSRLLQGEVGSGKTIVALRAMLQVVDAGYQCALLAPTEVLATQHARS 362

Query: 341 IKKYT-----------QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           ++                    V ++TG+MP A +R AL     G A I+IGTHAL QD+
Sbjct: 363 LRAMLGSLATAGELGAHEKATRVALLTGSMPVAAKRTALNEAITGDAGIVIGTHALIQDN 422

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDIS 446
           ++++ L +V+VDEQHRFGV+QR +L  +A     PH+L+MTATPIPRT+ +T LGD+++S
Sbjct: 423 VEFFNLGMVVVDEQHRFGVEQRDRLRSRAREGLSPHLLVMTATPIPRTIAMTVLGDLEVS 482

Query: 447 KITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEE-------- 494
            + + P GR PIK+ ++P ++    +    ER++  ++EG++AY +C +I +        
Sbjct: 483 TLRQLPKGRSPIKSSVVPASQKPQWVARAWERIREDVAEGRQAYVVCSRIGDGEKGDGED 542

Query: 495 ---KKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
              +K    +S VE F  L         + ++HGR+   +K++VM  F  G   +L+ TT
Sbjct: 543 AFDEKAPETKSAVEVFEELSGSIMPDLRVGLLHGRLPADEKDAVMRDFTAGDIDVLVCTT 602

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V+EVG+DV +A+I++I +A+ FG++QLHQLRGRVGRG     CIL+        +Y RLS
Sbjct: 603 VVEVGVDVPNATIMVIVDADRFGVSQLHQLRGRVGRGRHQGLCILVTEMNPGGPAYERLS 662

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL-HDSLLEIARKDAKHILT 668
            + +T DGF +A+ DL  R+EG+ILG  QSG    L     L H+ ++  A + A+ ++ 
Sbjct: 663 NVASTNDGFELAQLDLATRREGDILGAAQSGTTSTLRLLSLLGHEDVIAAASEFARSVIA 722

Query: 669 QDPDLTSVRGQSI 681
            DP L +  G S 
Sbjct: 723 DDPRLDNHPGLSA 735


>gi|225850660|ref|YP_002730894.1| ATP-dependent DNA helicase RecG [Persephonella marina EX-H1]
 gi|225644951|gb|ACO03137.1| ATP-dependent DNA helicase RecG [Persephonella marina EX-H1]
          Length = 802

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 233/693 (33%), Positives = 365/693 (52%), Gaps = 35/693 (5%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN 95
                  +  F+ P  + DR    K+ +I +         +      +  K +  ++ + 
Sbjct: 117 VGIGTVYNTFFFPPKKYEDRR-LKKLGKIKDGEYGLFEVEVVDIKKIKRGKLK-TELTVK 174

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL 155
                +  ++F      L + F +G+K+ + GK+   K  I MV P  IF +   V    
Sbjct: 175 QERYFMK-VYFVHDKPFLFSFFRKGKKVLLYGKVSVFKKDISMVQPE-IFTDFDPVIHDR 232

Query: 156 IEAVYSLPTGLSVDL-------FKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFN 207
           I  VYSL    +V +        ++ I + L S L   PE+I  D+L++ +FP I     
Sbjct: 233 IVPVYSLKGDSTVKITSQTINHLRRGIFKILKSFLRFHPEYIPADILKRHNFPDIKSCIK 292

Query: 208 IIHNPRKAKDFEWTSPAR----ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263
            +H P K +D E  +  R     RL +D+L   Q+A +  +   K +    I V      
Sbjct: 293 NLHFPEKDQDIESLNSFRTVYQRRLIFDDLFILQLAQMYRKNLLKSDPAERITVSEGFID 352

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +    +PF  T+ Q  AIK+IL D+S+   M R++QGDVGSGKT+VA  ++ A      Q
Sbjct: 353 EFESKLPFELTEDQRKAIKEILSDISKTVPMNRLVQGDVGSGKTVVAAASVIAVALDNKQ 412

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             +MAP  ILA QHY   K   +N  I   ++TG++PQ  ++K    I  G+A ++IGTH
Sbjct: 413 TAVMAPTEILAAQHYRTFKDILKNFGITPYLLTGSIPQKDKKKIYRLIQSGEAKVVIGTH 472

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGD 442
           AL QD +++  L LV+VDEQHRFGV QR  L +K    PH L+MTATPIPRT+ + S GD
Sbjct: 473 ALIQDELKFKNLSLVVVDEQHRFGVIQRKALIEKSHKVPHTLIMTATPIPRTMQIASFGD 532

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +DIS I + P GRKP++TV+I  +    +  ++   + +G++ + + P IEE ++ + +S
Sbjct: 533 LDISTIKQLPKGRKPVETVLIYDDEKKILYRKVSQEIEKGRQVFVVYPLIEESEKIDLKS 592

Query: 503 VVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             E +    + F    I ++HG+M   +K+ +M+SF+ G   +L++TTVIEVG+D+ +AS
Sbjct: 593 AEEGYEQWKKAFPDKKILLLHGKMPQEEKDRIMESFRKGEADILVSTTVIEVGVDIPNAS 652

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH------------PPLSKNSYTRLS 609
           +++IE A  FGL+Q+HQLRGR+GRG+    C L+                    +  RL 
Sbjct: 653 VMVIEEAHRFGLSQIHQLRGRIGRGQYEGYCYLVLPSRFKRKLENRDEEKRRVQTVERLK 712

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP--ELHDSLLEIARKDAKHIL 667
           +L  T DGF IAEEDLK R  G+I G  QSG     IA    +L   +L+IA+ +A+ ++
Sbjct: 713 ILVKTNDGFRIAEEDLKIRGGGDIAGTAQSGRLNIGIADLSRDLDRKILQIAKDEAQKLI 772

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            +DP L   R  ++   +   +Y + F  +  G
Sbjct: 773 EKDPYL---RHHTVLKEIVFERYADRFDLVNVG 802


>gi|319796409|ref|YP_004158049.1| ATP-dependent DNA helicase recg [Variovorax paradoxus EPS]
 gi|315598872|gb|ADU39938.1| ATP-dependent DNA helicase RecG [Variovorax paradoxus EPS]
          Length = 708

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/672 (33%), Positives = 357/672 (53%), Gaps = 34/672 (5%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ 85
            L K+         R ID   Y P  + D     K+++  +  +  + G +++      +
Sbjct: 33  ALRKL------GLVRDIDFALYLPMRYEDETRIVKLADTRDGDMAQVEGVVTECEVV-YR 85

Query: 86  KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145
            RR     ++DG+    L FF       K     G ++ V G+++       ++HP    
Sbjct: 86  PRRQLIATIDDGSDTCQLRFFNFYPSQQKQ-LAVGARVRVRGEMRGGFVGRQIMHPTVKA 144

Query: 146 HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEA 205
             +       +  VYS   GL+  + ++ +   L+R  VL E I   +    ++  +  +
Sbjct: 145 AGTSLPE--ALTPVYSTVAGLAQPVLRREVRSGLAR-AVLDETIPVQIGLGGAW-DLRSS 200

Query: 206 FNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI-----PIN 256
              +H P          + + PA +R+  +ELLA Q++ L  R +   +        P  
Sbjct: 201 LTFLHYPTPDVAMATLEDHSHPAWQRIKAEELLAQQLSQLQARMERAAQRAPVLPSSPEP 260

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           V   +  ++L  +PF  T +Q+   ++I +D+ ++  M R+LQGDVGSGKT+VA +A A 
Sbjct: 261 VATSLHAQLLAVLPFGLTGAQQRVGEEITRDLGREIPMHRLLQGDVGSGKTVVAALAAAR 320

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT----QIIVEIITGNMPQAHRRKALERIA 372
           A++AG Q  +MAP  ILA QH+  +  +         + V  +TG+  +  R      + 
Sbjct: 321 AIDAGFQCALMAPTEILAAQHFGKLVGWLDPLLAERGLRVAWLTGSQKKKERDAMSAAVE 380

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP---HVLLMTAT 429
            G+A ++IGTHA+  + +++  L L I+DEQHRFGV QRL L  KA      H+L+M+AT
Sbjct: 381 SGEAALVIGTHAVISEKVRFKNLALAIIDEQHRFGVAQRLALRGKAVGHLEPHLLMMSAT 440

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL ++   D+D+S + E P GR PI T ++  +R DEVI+R++  +++G++ YW+C
Sbjct: 441 PIPRTLAMSYYADLDVSTLDELPPGRTPIVTKLVADHRRDEVIDRIQAQIAQGRQVYWVC 500

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           P IEE +  + R+  E  + L      ++   ++H RM   +K++VM +F     ++L++
Sbjct: 501 PLIEESEAVDLRNATETRDELAGTLGEAVHVGLLHSRMPTAEKQAVMAAFTANEIQVLVS 560

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS----KN 603
           TTVIEVG+DV +AS+++IE+AE FGL+QLHQLRGRVGRG   S+C+LLY P  S    + 
Sbjct: 561 TTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYAPGDSGRVGEA 620

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL  +  T DGF IA  DL+ R  GE LG +QSG P    A       LL+ AR+ A
Sbjct: 621 ARARLKAMAETGDGFEIARRDLEIRGPGEFLGARQSGAPLLRFADLTTDTLLLDWARELA 680

Query: 664 KHILTQDPDLTS 675
             +L + PDL  
Sbjct: 681 PVMLEKHPDLAQ 692


>gi|297156905|gb|ADI06617.1| ATP-dependent DNA helicase RecG [Streptomyces bingchenggensis
           BCW-1]
          Length = 743

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 228/744 (30%), Positives = 373/744 (50%), Gaps = 69/744 (9%)

Query: 21  KKYSLFLSKIINCGNA-------NETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73
                 L K++    A       +     DLL ++P  + +R    ++S++  +  VT+ 
Sbjct: 5   PALDEPLKKVLGGNTAKVMADHLDLHTVGDLLHHYPRRYAERGELTRLSDLPLDEHVTVV 64

Query: 74  GYIS--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
             ++  +   F    ++  ++ L DG+G + L+FF R     +     GR+    GK+  
Sbjct: 65  AQVADARVHKFDRGTKQRLEVTLTDGSGRLQLVFFGRGVYTAQKELLPGRRGMFAGKVGV 124

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPL------IEAVYSLPTGLSVDLFKKIIVEALSRLPV- 184
            +N   + HP Y      D    +      +  +Y     L     +K +   L  L   
Sbjct: 125 FRNVRQLAHPAYEMLGKDDGAAAVEAWANQLRPLYPACAQLESWKIEKAVGTLLDSLEAT 184

Query: 185 ----LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
               L + + + L   +    + EA   IH PR   D    + AR+RL +DE    Q+AL
Sbjct: 185 GWDGLVDALPESLRLGRGLAELPEALLKIHRPRTKTDI---AVARDRLKWDEAFVLQVAL 241

Query: 241 LLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
              R    +   +P    EG +       +PF+ T+ Q+S  ++I  D++  + M R+LQ
Sbjct: 242 ARRRHADAQLPAVPRAPAEGGLLDAFDARLPFTLTEGQQSVSREIFADLATDHPMHRLLQ 301

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT----------- 348
           G+VGSGKT+VAL AM   V++GGQA ++AP  +LAQQH+  I +   +            
Sbjct: 302 GEVGSGKTMVALRAMLGVVDSGGQAAMLAPTEVLAQQHHRSITEMMGDLAEGGMLGGSEQ 361

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              V ++TG+M  A RR+AL  +  G+A I++GTHAL +D +Q++ L LV+VDEQHRFGV
Sbjct: 362 GTKVVLLTGSMGAAARRQALLDLVTGEAGIVVGTHALIEDKVQFHDLGLVVVDEQHRFGV 421

Query: 409 QQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           +QR  L  +    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI + ++P   
Sbjct: 422 EQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKD 481

Query: 468 ----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR---------------------- 501
               +    ER++  ++ G +AY +CP+I + +E   +                      
Sbjct: 482 KPHFLARAWERVREEVAAGHQAYVVCPRIGDDEEDEPKGAARKSAKPPVKSPEDEAEKRP 541

Query: 502 --SVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             +V++    L +       + +++GRM    K+ VM  F  G   +L+ATTVIEVG++V
Sbjct: 542 PLAVLDVAEQLAKGPLRELRVEVLYGRMQPEAKDEVMRRFAAGEVDVLVATTVIEVGVNV 601

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            +A+ ++I +A+ FG++QLHQLRGRVGRG     C+L+   P    +  RL  +  T DG
Sbjct: 602 PNATAMVIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVSEMPEGSPARARLGAVAATLDG 661

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSV 676
           F ++  DL+QR+EG++LG  QSG    L     + D  ++  AR++A  I+  DP+L   
Sbjct: 662 FELSRIDLEQRREGDVLGQAQSGARSSLRVLAVIDDEEVIAAAREEAAAIVAADPELAGY 721

Query: 677 RGQSIRILLYLYQYNEAFQFIRAG 700
               +R  L  +   E  +++  G
Sbjct: 722 P--ELRTALDAFLDEEREEYLDKG 743


>gi|254373789|ref|ZP_04989272.1| ATP-dependent DNA helicase RecG [Francisella novicida GA99-3548]
 gi|151571510|gb|EDN37164.1| ATP-dependent DNA helicase RecG [Francisella novicida GA99-3548]
          Length = 679

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 225/665 (33%), Positives = 363/665 (54%), Gaps = 20/665 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           GVG+     L+K       N     DLL   P  + D  +   I+ +   +   I G ++
Sbjct: 8   GVGEATIKALAK------CNIHDPNDLLTIFPKDYKDTRFITPINHLVAGKRSLIQGRVT 61

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
            + +++   ++  +  +ND TG  +++ F      L  +      +   GK++       
Sbjct: 62  -NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILERSEYVRCYGKVE-FSLSPQ 118

Query: 138 MVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK 196
           MVHP +   +N +        AVY L   +   L  K+I++ L    V    I   LL++
Sbjct: 119 MVHPEWATVNNGECALKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLLRR 176

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
            +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K   K     I 
Sbjct: 177 FNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQAPQIF 236

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +      +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA  A
Sbjct: 237 LTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIAAYA 296

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R++L++I   + 
Sbjct: 297 AVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKIKDQKD 356

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT------APHVLLMTATP 430
            +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K++       PH L+++ATP
Sbjct: 357 CVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIISATP 416

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +  G++ YW+CP
Sbjct: 417 IPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYWVCP 476

Query: 491 QIEEKKESNFRSVVER-FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +EE +  +F   V+  +  L E     ++ +++G M   DK   M +FK     +L+AT
Sbjct: 477 LVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVLVAT 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+    RL
Sbjct: 537 TVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGKRRL 596

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           S+++ ++DGF +AE+DL+ R  G+ILG +QSG+  F       +        + A  +  
Sbjct: 597 SLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTFKTFDINEYYDNYAEVIEVANLLEK 656

Query: 669 QDPDL 673
             P+L
Sbjct: 657 DYPEL 661


>gi|32471209|ref|NP_864202.1| ATP-dependent DNA helicase RecG [Rhodopirellula baltica SH 1]
 gi|32396911|emb|CAD71879.1| ATP-dependent DNA helicase RecG [Rhodopirellula baltica SH 1]
          Length = 734

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 219/728 (30%), Positives = 360/728 (49%), Gaps = 53/728 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+    GVG   +  L K+            D+LF  P +        K+++++E +
Sbjct: 16  LTTPIQYLPGVGPARATKLRKL------GLRIARDILFLFPRNHTFPPPPTKVADLAEGQ 69

Query: 69  IVTITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             T  G I+      +   +  +  ++ + +G + ++FF +             ++ ++G
Sbjct: 70  PATFIGTITDAELVSRTPGKSIFAAIVENDSGAVRIVFFNQ--PFRAEQLTFETQVRISG 127

Query: 128 KIKKLKNRIIMVHPHYIFHNS-----QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             K    R    HP Y          +D    LI A Y L  G+     +++    ++ L
Sbjct: 128 APKLAGLRWEFTHPQYEIVQEGELPDEDAPGGLILANYPLTEGIKQSDLRRLARPLVNEL 187

Query: 183 -----PVLPEWIEKDLLQKKS---------FPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
                 VLPE +  +  Q+ +          P I++A   IH P    D         RL
Sbjct: 188 AGQLTEVLPERLRTEAAQRLNAAGMELPDVLPGISDALRGIHLPESEADLTAAQT---RL 244

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
            + ELL  Q+AL + R+    E+  P +     +  +ILR  PF  T  Q   +  I  D
Sbjct: 245 VFQELLVMQLALAMRRRSLTSELRAPSLECTATVRNRILRRFPFELTGDQRRVMDVIAAD 304

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           M+++  M R+LQGDVGSGKT+VA+ AM  AV  G QA +MAP  +LA+QH+  +++   +
Sbjct: 305 MARQFPMNRLLQGDVGSGKTVVAIFAMLVAVAGGHQATLMAPTEVLARQHHATLQRMLAD 364

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
           +++ V ++ G++  A RR  +E+I  G+  I+IGT AL    +++++L L ++DEQH+FG
Sbjct: 365 SRVRVGLLCGSLGAAERRGTVEKIRTGELDIVIGTQALLY-GVEFHRLGLCVIDEQHKFG 423

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           V+QR+ L      PH L+M+ATPIPR++ +T  GD+D+S + EKPAGR  + T +   + 
Sbjct: 424 VKQRVTLRDGGVDPHYLVMSATPIPRSVAMTQFGDVDLSTLREKPAGRGAVHTYLAGDSW 483

Query: 468 IDEVIERLKVVLSEGKKAYWICPQI-----------------EEKKESNFRSVVERFNSL 510
            D     +K  ++EG++A+ + P++                  E    +  SV   +  L
Sbjct: 484 RDRWWAFVKERVAEGRQAFVVAPRVGPEVESADEELSELVDPAEPPAEDITSVHSTYEQL 543

Query: 511 HEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                    + ++HGRM+  +K+ VM+SF  G   +L++TTVIEVGIDV +A+++ I   
Sbjct: 544 RTGPLKGLRVGLLHGRMASDEKQQVMESFAEGELDVLVSTTVIEVGIDVPNATVMAILGG 603

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
             FGLAQLHQLRGRV RG       +            RL V + T DGF +AE D + R
Sbjct: 604 NRFGLAQLHQLRGRVSRGTHAGHVCVFVDGDKPPQDDERLKVFEQTLDGFELAEADFRLR 663

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLY 688
             G++LG +QSG  +  IA       +L++AR+ A+  + QDP++ S   + ++  + L 
Sbjct: 664 GPGDVLGQRQSGDARLRIADLHRDVEILQVAREMAQDWIDQDPEMESEGLEDLKSQV-LR 722

Query: 689 QYNEAFQF 696
           +Y      
Sbjct: 723 RYGNHLDL 730


>gi|116330156|ref|YP_799874.1| ATP-dependent DNA helicase, recG-related [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116123845|gb|ABJ75116.1| ATP-dependent DNA helicase, recG-related [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 724

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 220/710 (30%), Positives = 371/710 (52%), Gaps = 53/710 (7%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P++  +GVG   +  L+ I            DLL + P  ++DR     +  +  
Sbjct: 15  NELLLPVTVIKGVGSSKAAALASI------GIHTLQDLLNFFPRRYLDRSLTDNVL-LKT 67

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              VT+   +   +     K+  + +       E   + F+R     + +F  G  + VT
Sbjct: 68  GETVTLIVEVVD-AYLAHGKKSRFVVGAKTKNNERISIVFFRGVVFFQKIFQPGTTLVVT 126

Query: 127 GKIKKLKNRIIMVHPHYIFHNS----------------------------QDVNFPLIEA 158
           G+++  +    ++HP Y    +                            + ++   I  
Sbjct: 127 GRLEYFRG-FQLIHPDYEILANAIKPSYTINSTNLDKKSRQQEPELAELPEMIHAGRIIP 185

Query: 159 VYSL-----PTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
           +YS        GL    F+KI+  AL RL   + E +  +++++++     E++  IH P
Sbjct: 186 LYSSGEVLKSQGLDSRGFRKILYLALERLKGGISEILPNEIVKRRNLIPREESYREIHFP 245

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPF 271
                 +     + RL Y+EL    + +   +++ +K   +     + + A  + +N+ F
Sbjct: 246 TDEVSLDAA---KYRLKYEELFYFNLLIEHKKREREKIKRVLWPLPKSETADSVRKNLLF 302

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q SA++ I +   +   +  +LQGDVGSGKTLV+L+     ++   Q  ++AP  
Sbjct: 303 QLTEDQSSALRKIEELTKRDQPIAVLLQGDVGSGKTLVSLLTALRYMDNQIQVCMVAPTE 362

Query: 332 ILAQQHYEFIKKYTQNTQII-VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
           ILA+QHY+ I  +  N   + +E++ G  P+ +R + L RI  G    +IGTH++FQ+ +
Sbjct: 363 ILARQHYQTILSFLGNMPFLGIELLVGKEPKKNRYEKLYRIKKGDTLFVIGTHSVFQEDV 422

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            + +L LVI+DEQH+FGV QR  L  K   P +L MTATPIPRTL LT  GD+D+  I  
Sbjct: 423 LFSELGLVIIDEQHKFGVDQRETLRSKGKNPDILAMTATPIPRTLCLTLYGDLDLLTIKS 482

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           KP GR PI+T     NR + V + ++  +S G++ Y + P +EE ++ + +S +  +  L
Sbjct: 483 KPKGRMPIQTKWFQENRREGVYKSIRKYVSSGRQCYIVYPLVEESEKVDLKSCIAAYEHL 542

Query: 511 HEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                S  ++ ++HG+M   +K+ VM  F     ++L++TTVIEVGIDV +A++++IE+A
Sbjct: 543 KHEIFSDFAVGLVHGKMETEEKDRVMQEFSKNRIQILVSTTVIEVGIDVPNATVMMIEHA 602

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           + FG++QLHQLRGRVGRG+E S CIL+    +++++  RL  + N  DGF ++E DL+ R
Sbjct: 603 DRFGISQLHQLRGRVGRGDEESFCILMTDSKVTEDAKVRLDAMVNFSDGFALSEIDLQLR 662

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP-DLTSVR 677
             GE++G++QSG+P F IA       L+E+ R+DA  IL  +P DL    
Sbjct: 663 GPGELMGVRQSGLPDFRIADLRKDSKLIELTREDA--ILFGNPGDLEKEE 710


>gi|296121173|ref|YP_003628951.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296013513|gb|ADG66752.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 703

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/696 (32%), Positives = 358/696 (51%), Gaps = 33/696 (4%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
            P+   R VG + +  L+K+      +     DLL + P   +D     +I  + E    
Sbjct: 8   TPVEFLRTVGPQRAALLAKL------DILTVEDLLLWMPRDVLDLTRTTRIEGLIEGTTQ 61

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
           T+ G +    S   + R    ILL    G +  ++F +    +   +     + VTG+ K
Sbjct: 62  TLRGIVVDRDSRISRGRSMVGILLKADGGYLRCVWFNQ--PYVFRKYEPDSVLLVTGQPK 119

Query: 131 KLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
               R  M HP      S D    P I   Y L  G+S+   +++   A+     +L + 
Sbjct: 120 LRDGRWEMSHPLVQRLESDDEQAGPGILPRYPLTEGISMHEMRRMTRAAVEECAHLLTDP 179

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I     Q   +P+ +EA   +     A+  E    +R+RL  ++LL  Q+ L L R+ + 
Sbjct: 180 IPASFRQVHQWPARSEACRGL---HVAQSLEEYERSRKRLLLEDLLEFQLGLALRRRMRI 236

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +++  I +  + +I  +I R  PF  T  Q  A+++IL D+ +   M R+LQ DVG+GKT
Sbjct: 237 EQQEAIALPADQRIRARIARLFPFEWTNGQNEALEEILTDLEKTRPMHRLLQADVGAGKT 296

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ AM  AV    QA++MAP  ILA+QH+E +++    +Q+   ++TG++  A +R  
Sbjct: 297 AVAIAAMLVAVANRMQAILMAPTEILARQHFETLEELLAESQVERRLLTGSLTAAQKRTT 356

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  I  G A +I+GT +L Q+ +++ K  LV++DEQH+FGV+QR +  Q +T PH+L+MT
Sbjct: 357 LSEIEEGSAQLIVGTQSLIQEGVKFSKPGLVVIDEQHKFGVEQRARFAQGSTIPHMLVMT 416

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAY 486
           ATPIPRTL LT+ GD+D+S I E P GR+P+ T ++       +  + LK  L+EG++AY
Sbjct: 417 ATPIPRTLCLTAFGDLDLSIIRELPPGRQPVSTHVVTDAPSARKAWDFLKSKLTEGRQAY 476

Query: 487 WICPQIEEKKESNFR----------SVVERFNSLHEHFTS------SIAIIHGRMSDIDK 530
            ICP++E  + S                E    L++   S       + ++HGRMS   +
Sbjct: 477 VICPKVETTRSSEQASSPQIVQAAPQTWESAEDLYQRLQSKELAQFRVGLLHGRMSPELR 536

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
              M  F+     +L+AT+VIEVG+DV  A+ +I+ +AE FGL+QLHQ RGRVGRG    
Sbjct: 537 AETMRKFREHELDVLVATSVIEVGVDVPSATQMIVYHAEQFGLSQLHQFRGRVGRGSRQG 596

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C L        ++ +RL  L+ T DGF +AE D + R  G++LG +Q G      A   
Sbjct: 597 FCFLFTKST-DPDALSRLKTLEQTNDGFAVAEADFQLRGHGDVLGTRQHGQTPLKRANLI 655

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
               L+E AR  A  ++       +    ++R L++
Sbjct: 656 RDAQLVETARALATSLIDS-GQFDTPEFLTLRRLVH 690


>gi|284032693|ref|YP_003382624.1| ATP-dependent DNA helicase RecG [Kribbella flavida DSM 17836]
 gi|283811986|gb|ADB33825.1| ATP-dependent DNA helicase RecG [Kribbella flavida DSM 17836]
          Length = 747

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 216/744 (29%), Positives = 360/744 (48%), Gaps = 77/744 (10%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           G K +   ++++            LL ++P  ++ +       E+      T++G + + 
Sbjct: 14  GAKTAKTFAEVL-----GIETVGQLLRHYPRRYLKKGELTPFDELEVGDQATVSGRVKKV 68

Query: 80  SSFQ---------------LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
           +                   + R   K+++ DG  ++ L FF +    L N    G    
Sbjct: 69  TVRSLDSKQEIRLEEVNKYRRHRTITKVVVTDGRNDLELAFFNQ--PWLANKLTPGTAAL 126

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE-------AVYSLPTGLSVDLFKKIIVE 177
             G++   ++   +  P     + +D++   IE        +Y     L     ++ I  
Sbjct: 127 FWGEVTTFRDIRQLKGPGTEILDEEDLSEAEIERRAKPFRPLYPATAKLPTATIERSIKI 186

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
            L  L  + + I + +L  +    + EA   IH P   KD++    A++R  ++E L  Q
Sbjct: 187 VLDNLEDVEDPIPELVLANEKLLGLREALQKIHLPETEKDWD---TAQQRFRFEEALVMQ 243

Query: 238 IALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
             L   R        +P     G +       +PF  T+ Q     +I  D+++ + M R
Sbjct: 244 TILAQRRAVADALKAVPRKRTPGGLLDDFDARLPFQLTEGQAEVCDEIFADLARPHPMHR 303

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------T 345
           +LQG+VGSGKT+VAL AM + V+AGGQAV++AP  +LA QH++ + K             
Sbjct: 304 LLQGEVGSGKTVVALRAMLSVVDAGGQAVLLAPTEVLATQHHKTLTKMLGELAEAGMLGG 363

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
            +    V ++TG++  A RR A+   A G A I++GTHAL +D +Q+  L LV+VDEQHR
Sbjct: 364 ADRATRVGLLTGSLNAASRRTAMLDAASGAAGIVVGTHALLEDKVQFADLGLVVVDEQHR 423

Query: 406 FGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           FGV+QR  L        PHVL+MTATPIPRT+ +T  GD+ +S +TE PAGR PIK+ ++
Sbjct: 424 FGVEQRAALSTKSGENTPHVLVMTATPIPRTVAMTVFGDLAVSTLTELPAGRSPIKSSVV 483

Query: 464 PINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE-------------- 505
           P       ++   +R++  + +G +AY +CP+I +  ++      E              
Sbjct: 484 PAKEKPAWLERAWQRVREEVQKGHQAYVVCPRIGDDVKNAGDEEGEFAAGGEDEGDAKSK 543

Query: 506 ---------RFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                        L +       A++HGR+   +K++VM  F  G   +LIATTVIEVG+
Sbjct: 544 PRPAISVLQVAEVLQQVLPDLRQAVLHGRLPAEEKDAVMSRFAAGEIDVLIATTVIEVGV 603

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +AS +++ +A+ FG++QLHQLRGRVGRG+    C+L+        S  RL  +  T 
Sbjct: 604 DVPNASTMVVMDADRFGISQLHQLRGRVGRGKVPGLCLLVTDGWPGSKSRERLDAVAATT 663

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           DGF ++  DL+ R+EG++LG+ QSG      +      + ++  AR  A  +++ D DL 
Sbjct: 664 DGFELSRIDLENRREGDVLGVAQSGRRSSLKLLSVLRDEEVIYAARHVANSLVSVDADLA 723

Query: 675 SVRGQSIRILLYLYQYNEAFQFIR 698
                ++R  +     +E  +++ 
Sbjct: 724 GYP--ALRAFVRDALESETTEYLE 745


>gi|229815441|ref|ZP_04445773.1| hypothetical protein COLINT_02489 [Collinsella intestinalis DSM
           13280]
 gi|229808974|gb|EEP44744.1| hypothetical protein COLINT_02489 [Collinsella intestinalis DSM
           13280]
          Length = 727

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 222/722 (30%), Positives = 357/722 (49%), Gaps = 42/722 (5%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L+  ++  + V       L ++         R  DLL + P  ++D      I      
Sbjct: 19  ALYEDVARLKYVSGAREEALRRL------GIERVGDLLSHIPFRYLDFTRAYTIESAPLG 72

Query: 68  RIVTITGYISQHSSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
            + TI G + + S+    K      ++ L D +G + + FF  K   L   F  G ++ +
Sbjct: 73  EVCTIVGTVDKVSNRPTSKPGMTLTEVFLVDESGVLKVAFF--KQPWLAREFARGDRLAL 130

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            GK++       M  PH+   +        I+ V+ +  G+S    ++I   AL ++ V 
Sbjct: 131 IGKMEFAYGFKQMASPHFEKLDGGGARAG-IQPVHRVTDGISQAWMRRIASVALEQVGVF 189

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            + +   L  ++   S++ A   IH PR   + +     R RLAYDEL+  Q+AL L   
Sbjct: 190 CDPVPAPLRARRQLMSLSRALRTIHFPRLMNEVQLA---RRRLAYDELMYLQLALRLRND 246

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGS 304
               ++    +  G   + +   +PF+ +  QE+A+ DIL DM    + M R+L GDVG+
Sbjct: 247 GDLLDVAPLAHRVGARVRAMREALPFALSDEQEAAVSDILGDMCDAGHVMNRLLLGDVGT 306

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT VA +A+A A ++G QA +MAP G+LA+Q+            I   ++TG+   + R
Sbjct: 307 GKTAVACVALACAADSGNQACVMAPTGVLARQYAVKSGPLLDAAGISWALLTGSTAASER 366

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
              LER+A G   ++ GTHA+  D +++ +L LV++DEQHRFGV QR  L  K     +L
Sbjct: 367 SSILERVASGALDVVFGTHAVLNDDLRFRRLSLVVIDEQHRFGVGQRNVLRGKGPGADLL 426

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL L+  GD+D S I  +P     + TV +     D     ++  L++G++
Sbjct: 427 VMTATPIPRTLALSVYGDLDTSIIRHRPVPGAGVSTVALESGSRDIAYGAVRDALAQGRQ 486

Query: 485 AYWICPQIEEKKESN----------------------FRSVVERFNSLHEHFTSSIAIIH 522
           AY ICP +  +                               E  +       + + ++H
Sbjct: 487 AYIICPMVSPQDAPEQLDDVPGLDIGESGRARQAVTLHDVETEASDIRRLIPGARVEVMH 546

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M+   K+ V+D F  G   +L++TTV+EVG+DV +A++++IEN E FGLA LHQLRGR
Sbjct: 547 GKMAPKAKDDVIDRFGKGEIDILVSTTVVEVGVDVPNATVMLIENGERFGLATLHQLRGR 606

Query: 583 VGRGEEISSCILLYHPPLSK----NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           VGRG    +C +L      +     ++ RL  L  T+DGF +AE DL+ R EGEILG++Q
Sbjct: 607 VGRGSNPGTCYVLTEVRPKRGSKSPAWERLQALAKTDDGFELAEMDLRLRHEGEILGLRQ 666

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
            G         +    L+E A +DA+ +L    DLT+     +R  + + +Y + F+ + 
Sbjct: 667 HGGVALCFVDLDADTDLIEAAHEDAEELLRYSRDLTACATMPMRHEV-IARYGDVFKEVS 725

Query: 699 AG 700
            G
Sbjct: 726 GG 727


>gi|254368764|ref|ZP_04984777.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121685|gb|EDO65855.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 679

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 224/665 (33%), Positives = 364/665 (54%), Gaps = 20/665 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           GVG+     L+K       N     DLL   P  + D      I+ +   +   I G ++
Sbjct: 8   GVGEATIKALAK------YNIHDPNDLLTIFPKDYKDTRVITPINHLVAGKRSLIQGRVT 61

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
            + +++   ++  +  +ND TG  +++ F      L  +  +   +   GK++       
Sbjct: 62  -NLTYKKFGKKFLRFNINDNTGFCSVILFKFYRNQLA-ILEKSEYVRCYGKVE-FSLSPQ 118

Query: 138 MVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK 196
           MVHP +   +N +        AVY L   +   L  K+I++ L    V    I   LL++
Sbjct: 119 MVHPEWATVNNGECTLKHGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLLRR 176

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
            +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K   K     + 
Sbjct: 177 FNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQAPQLF 236

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +      +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA  A
Sbjct: 237 LTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIAAYA 296

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R++L++I   + 
Sbjct: 297 AVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKIKDQKD 356

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT------APHVLLMTATP 430
            +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K++       PH L+++ATP
Sbjct: 357 CVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIISATP 416

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +  G++ YW+CP
Sbjct: 417 IPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYWVCP 476

Query: 491 QIEEKKESNFRSVVER-FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +EE +  +F   V+  +  L E     ++ +++G M   DK   M +FK     +L+AT
Sbjct: 477 LVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVLVAT 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+    RL
Sbjct: 537 TVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGKRRL 596

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           S+++ ++DGF +AE+DL+ R  G+ILG +QSG+  F       +    +   + A  +  
Sbjct: 597 SLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTFKTFDINEYYDNYDKVVEFADMLYK 656

Query: 669 QDPDL 673
             P+L
Sbjct: 657 HYPEL 661


>gi|293402242|ref|ZP_06646380.1| ATP-dependent DNA helicase RecG [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304349|gb|EFE45600.1| ATP-dependent DNA helicase RecG [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 669

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 219/659 (33%), Positives = 354/659 (53%), Gaps = 21/659 (3%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            K            +DLL Y+P  +     +P+  E  +E  + + G I   +     K 
Sbjct: 11  KKRALLHTMGIENAMDLLTYYPFRYESVETKPR-KEWQKEDRIALEGVILNRARVIRLKG 69

Query: 88  RPYKILLND--GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145
           +             E+ +  F R    + + F  G+ IT+  K +       M    Y F
Sbjct: 70  KQSVTKFKLLYEEEELDIAIFNR--PWI-SAFTVGKTITLIAKYE---GGSRMTALQYNF 123

Query: 146 HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA-LSRLPVLPEWIEKDLLQKKSFPSIAE 204
              Q+     I  VY++  G+S    +K I +A L++   + E++  + LQK    S ++
Sbjct: 124 QPLQEQL--GIFPVYNVKEGISQKDIRKYIDKAWLAQQESIKEFLPMEYLQKYRLISRSQ 181

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG-IPINVEGKIAQ 263
           A   IH+P   K+ E    +   L Y+E L  QI +  ++ Q K+ +       + +   
Sbjct: 182 ALYFIHHP---KNMEAVKQSLRHLKYEEFLKFQITMQALKAQEKEVVHGHEKRFDNEEVM 238

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            + + + FS T+ Q   I++IL D+   + M R++QGDVG GKTLVA   M A V A  Q
Sbjct: 239 DLQKTLAFSLTEDQIKTIEEILADLKSDHIMYRMVQGDVGCGKTLVAAFGMYACVLAHKQ 298

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A  +AP  ILA+QH   +KK   + +I VE++  ++    ++  LER+A  +  I++GTH
Sbjct: 299 AAFLAPTEILAKQHGNNLKKIFHDYEIQVEVLYASLKTQEKKDILERLARNEIDILVGTH 358

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
           ALFQ+ ++++ L +V+ DEQHRFGV QR K+ +K      LLM+ATPIPRTL ++  GD+
Sbjct: 359 ALFQEGVEFHDLGMVVADEQHRFGVAQRKKMLEKGDKVDFLLMSATPIPRTLAISLYGDM 418

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           D+S I   P+GR+ I T ++    +  +++ +   + EG + Y +CP IE+ ++   R+V
Sbjct: 419 DVSTIQTLPSGRQKITTKLVHARSMSSILDFVLEKIDEGNQCYVVCPAIEKNEDYEIRNV 478

Query: 504 VERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            + +  +         I ++HG+MS  +K++VM +F  G  ++L++TTVIEVG+DV +A+
Sbjct: 479 TDIYQGMQASLGRRYQIGLLHGKMSAQEKDAVMKAFVEGDLQILVSTTVIEVGVDVANAN 538

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
           I++I +A  FGL+Q+HQLRGRVGRG +   C LL       +S  RL V + T DGF IA
Sbjct: 539 IMVIYDAHRFGLSQIHQLRGRVGRGSQPGYCFLLSDSK-DPDSLQRLKVCEKTNDGFAIA 597

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT--QDPDLTSVRG 678
             DL  R  G+ILG +QSG+P F++       ++LE+AR+DA+ +L    DP    ++ 
Sbjct: 598 RYDLALRGPGDILGTRQSGVPGFILGDVIQDANILEVAREDAQALLKHIHDPGYEQIKN 656


>gi|118496945|ref|YP_897995.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           novicida U112]
 gi|194324173|ref|ZP_03057947.1| type III restriction enzyme, res subunit family [Francisella
           tularensis subsp. novicida FTE]
 gi|118422851|gb|ABK89241.1| ATP-dependent DNA helicase [Francisella novicida U112]
 gi|194321620|gb|EDX19104.1| type III restriction enzyme, res subunit family [Francisella
           tularensis subsp. novicida FTE]
          Length = 679

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/665 (33%), Positives = 364/665 (54%), Gaps = 20/665 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           GVG+     L+K       N     DLL   P  + D      I+ +   +   I G ++
Sbjct: 8   GVGEATIKALAK------YNIHDPNDLLTIFPKDYKDTRVITPINHLVAGKRSLIQGRVT 61

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
            + +++   ++  +  +ND TG  +++ F      L  +  +   +   GK++       
Sbjct: 62  -NLTYKKFGKKFLRFNINDSTGFCSVILFKFYPNQLA-ILEKSEYVRCYGKVE-FSLSPQ 118

Query: 138 MVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK 196
           MVHP +   +N +        AVY L   +   L  K+I++ L    V    I   LL++
Sbjct: 119 MVHPEWATVNNGECALKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLLRR 176

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
            +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K   K     I 
Sbjct: 177 FNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQAPQIF 236

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +      +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA  A
Sbjct: 237 LTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIAAYA 296

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R++L++I   + 
Sbjct: 297 AVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKIKDQKD 356

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT------APHVLLMTATP 430
            +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K++       PH L+++ATP
Sbjct: 357 CVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIISATP 416

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +  G++ YW+CP
Sbjct: 417 IPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYWVCP 476

Query: 491 QIEEKKESNFRSVVER-FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +EE +  +F   V+  +  L E     ++ +++G M   DK   M +FK     +L+AT
Sbjct: 477 LVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVLVAT 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+    RL
Sbjct: 537 TVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGKRRL 596

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           S+++ ++DGF +AE+DL+ R  G+ILG +QSG+  F       +    +   + A  +  
Sbjct: 597 SLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTFKTFDINEYYDNYDKVVEFADMLDK 656

Query: 669 QDPDL 673
             P+L
Sbjct: 657 HYPEL 661


>gi|89255931|ref|YP_513293.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314413|ref|YP_763136.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501920|ref|YP_001427985.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167009166|ref|ZP_02274097.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367289|ref|ZP_04983316.1| ATP-dependent DNA helicase recG [Francisella tularensis subsp.
           holarctica 257]
 gi|290953712|ref|ZP_06558333.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312947|ref|ZP_06803666.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89143762|emb|CAJ78964.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129312|gb|ABI82499.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253106|gb|EBA52200.1| ATP-dependent DNA helicase recG [Francisella tularensis subsp.
           holarctica 257]
 gi|156252523|gb|ABU61029.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 679

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 224/665 (33%), Positives = 364/665 (54%), Gaps = 20/665 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           GVG+     L+K       N     DLL   P  + D      I+ +   +   I G ++
Sbjct: 8   GVGEATIKALAK------YNIHDPNDLLTIFPKDYKDTRVITPINHLVAGKRSLIQGRVT 61

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
            + +++   ++  +  +ND TG  +++ F      L  +  +   +   GK++       
Sbjct: 62  -NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILEKSEYVRCYGKVE-FSLSPQ 118

Query: 138 MVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK 196
           MVHP +   +N +        AVY L   +   L  K+I++ L    V    I   LL++
Sbjct: 119 MVHPEWATVNNGECTLKHGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLLRR 176

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
            +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K   K     + 
Sbjct: 177 FNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQAPQLF 236

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +      +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA  A
Sbjct: 237 LTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIAAYA 296

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R++L++I   + 
Sbjct: 297 AVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKIKDQKD 356

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT------APHVLLMTATP 430
            +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K++       PH L+++ATP
Sbjct: 357 CVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIISATP 416

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +  G++ YW+CP
Sbjct: 417 IPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYWVCP 476

Query: 491 QIEEKKESNFRSVVER-FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +EE +  +F   V+  +  L E     ++ +++G M   DK   M +FK     +L+AT
Sbjct: 477 LVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVLVAT 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+    RL
Sbjct: 537 TVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGKRRL 596

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           S+++ ++DGF +AE+DL+ R  G+ILG +QSG+  F       +    +   + A  +  
Sbjct: 597 SLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTFKTFDINEYYDNYDKVVEFADMLDK 656

Query: 669 QDPDL 673
             P+L
Sbjct: 657 HYPEL 661


>gi|88856719|ref|ZP_01131374.1| ATP-dependent DNA helicase RecG [marine actinobacterium PHSC20C1]
 gi|88814016|gb|EAR23883.1| ATP-dependent DNA helicase RecG [marine actinobacterium PHSC20C1]
          Length = 724

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/730 (30%), Positives = 372/730 (50%), Gaps = 56/730 (7%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL   LS    +G + +  + +             DL+ + P  +  R     ++++  +
Sbjct: 4   PLDQKLSAV--LGGRTATSMQR-----GLGLLTVGDLMTHFPRRYARRGELTALAQLPLD 56

Query: 68  RIVTITGYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
             VTI   + +  +  ++ +R    ++ ++DGTG +TL FF +      N    G +   
Sbjct: 57  EAVTIVAEVREVRNRPMRNKRGSILEVSISDGTGILTLTFFNQ--AWRANELSPGVRGIF 114

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE----------AVYSLPTGLSVDLFKKII 175
            GK+ + +    + HP Y   +   +     E           +Y   + ++    +K +
Sbjct: 115 AGKVGQYRGTRQLAHPDYELFDRDALELKKPEQAKAWAEQPIPIYPATSTVASWQIQKAV 174

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
              L  L  L + +   + +++     A+A   +H P+   D+     AR+ L + E   
Sbjct: 175 EVVLDTLGPLDDPVPDAVRRERELLPFAKALESVHRPKVDSDW---RTARDALRFQEAFV 231

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q ALL  R++ ++   I     G + +     +PF  T  Q++  + I +DM++   M 
Sbjct: 232 LQSALLQQRQKQRESEAIA-RTAGSLLEAFDAALPFVLTGDQQTVGEQIFRDMAEPVPMN 290

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT---QIIV 352
           R++QG+VGSGKTLVAL AM A  ++GGQ+ ++AP  +LA QH+  I +        Q+  
Sbjct: 291 RLVQGEVGSGKTLVALRAMLAVAQSGGQSALLAPTEVLAHQHFRSIVRTLGPDLSAQLRP 350

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            IITG +P A R+KAL     G + ++IGTHAL  D++ +  L LV+VDEQHRFGV QR 
Sbjct: 351 TIITGQLPTAERKKALLASVSGASRLVIGTHALLGDAVSFVDLGLVVVDEQHRFGVDQRE 410

Query: 413 KLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---- 467
            L  + +  PHVL++TATPIPRT+ +T  GD+DIS I E PAGR+PI + ++P+      
Sbjct: 411 ALRLKGSKPPHVLVLTATPIPRTVAMTVFGDLDISSIAELPAGRQPISSHVVPLAEKPGW 470

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-------------------SNFRSVVERFN 508
           +  V ERL   L+ G++ + +CP I+ K E                       +V E   
Sbjct: 471 VSRVWERLAEELAVGRQGFVVCPAIDAKTEEPGTEPVPSSADDPDAGPPRPIANVTEVLA 530

Query: 509 SLHEH---FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           SL  +       I  +HG++S  +K+ +M +F  G   +L+ATTVIEVG+DV +AS++++
Sbjct: 531 SLRSNSVLAGKRIEALHGKLSSDEKDELMRAFAAGDIDVLVATTVIEVGVDVPNASVMVV 590

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            +A+ FG++QLHQLRGRVGRG     C+ +    +   +  R+  + +T DGF +A +DL
Sbjct: 591 LDADRFGVSQLHQLRGRVGRGGVPGLCLFVTAAEVESLARERVEAVASTLDGFELANKDL 650

Query: 626 KQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           + R+EG++LG  QSG      + +      L+  AR+ A+ +L  DP L      +  + 
Sbjct: 651 ELRREGDVLGGVQSGGRSSLKLLRVANDGQLITEAREAAQAVLADDPTLAEHPALAAALK 710

Query: 685 LYLYQYNEAF 694
             L + +EAF
Sbjct: 711 RRLDESSEAF 720


>gi|226365976|ref|YP_002783759.1| ATP-dependent DNA helicase RecG [Rhodococcus opacus B4]
 gi|226244466|dbj|BAH54814.1| ATP-dependent DNA helicase RecG [Rhodococcus opacus B4]
          Length = 752

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 216/733 (29%), Positives = 363/733 (49%), Gaps = 81/733 (11%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           GKK +  L +       +     DLL ++P  +  +       +  E   +TI   ++  
Sbjct: 13  GKKTADALEE-----AFDIRTVEDLLRHYPHRYASQGRELAEKDPPEGEHITIIARVTSA 67

Query: 80  SSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
           +  +++ R     K++L+  T  + + FF    + +K+V   G +   +G +K  + +  
Sbjct: 68  AVVKMKNRPGSMLKVVLSTDTQNVDVTFF--SPQKVKHVIKPGVRAMFSGTVKYFRQKWS 125

Query: 138 MVHPHYIFHNSQDVNFP------------------------------------LIEAVYS 161
           + HP Y+                                               +  +Y 
Sbjct: 126 LTHPSYLILPEPRAGSEDPVVNVGRIRGAGDLAGIARASQEPGAGVDMSVFDRALIPLYP 185

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
               +      K + + L +L  + + + + +  ++    + EA   +H P   +D E  
Sbjct: 186 ATRDVESWTIMKCVRQILDQLDRVDDPLPEKIRAERDLIGLDEALRSVHLPDIREDVENA 245

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
                RL +DE  A Q+ L   R    + +        G IA      +PF  T  Q + 
Sbjct: 246 HD---RLRFDEATALQLVLARRRHDNAERVAPACPPVPGGIADVFESMLPFQLTDGQHAV 302

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
             +I  D+++ + M R+LQG+VGSGKT+VAL AM   V+AG Q  ++AP  +LA QH   
Sbjct: 303 ADEISADLARPHPMSRLLQGEVGSGKTIVALRAMLQVVDAGYQCALLAPTEVLATQHARS 362

Query: 341 IKKYT-----------QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           ++                    V ++TG+M  A +R A+     G A I+IGTHAL QD+
Sbjct: 363 LRAMLGSLATAGELGAHEKATRVALLTGSMGVAAKRTAMNEAITGDAGIVIGTHALIQDN 422

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDIS 446
           ++++ L +VIVDEQHRFGV+QR +L  +A     PH+L+MTATPIPRT+ +T LGD+++S
Sbjct: 423 VEFFNLGMVIVDEQHRFGVEQRDRLRSRAREGLSPHLLVMTATPIPRTIAMTVLGDLEVS 482

Query: 447 KITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEE-------- 494
            + + P GR PIK+ ++P ++    +    ER++  +++G++AY +C +I +        
Sbjct: 483 TLRQLPKGRSPIKSSVVPASQKPQWVARAWERIREDVADGRQAYVVCSRIGDGEKGDGED 542

Query: 495 ---KKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
              +K    +S V+ F+ L     +   + ++HGR+   +K++VM  F  G   +L+ TT
Sbjct: 543 ALDEKAPETKSAVDVFDELSGDIMADLRVGLLHGRLPADEKDAVMRDFTAGDIDVLVCTT 602

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V+EVG+DV +A+I++I +A+ FG++QLHQLRGRVGRG+    CIL+        +Y RLS
Sbjct: 603 VVEVGVDVPNATIMVIVDADRFGVSQLHQLRGRVGRGKHQGLCILVTEMNPGGPAYERLS 662

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL-HDSLLEIARKDAKHILT 668
            + +T DGF +A+ DL  R+EG+ILG  QSG    L     L H+ ++  A + A+ ++ 
Sbjct: 663 NVASTNDGFELAQLDLATRREGDILGAAQSGTTSTLRLLSLLGHEEVIAAASEFARAVIA 722

Query: 669 QDPDLTSVRGQSI 681
            DP L +  G S 
Sbjct: 723 DDPRLENHPGLSA 735


>gi|328947379|ref|YP_004364716.1| ATP-dependent DNA helicase RecG [Treponema succinifaciens DSM 2489]
 gi|328447703|gb|AEB13419.1| ATP-dependent DNA helicase RecG [Treponema succinifaciens DSM 2489]
          Length = 728

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/738 (30%), Positives = 350/738 (47%), Gaps = 82/738 (11%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            L+ L A + T  GVG   +   + +      N     DLL   P  + DR  R  + + 
Sbjct: 2   ILSELGAAVETLSGVGPAAAKKFASL------NIFTVADLLSVFPRDYEDRTKRIPLRDY 55

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
                V     ++ H  F   K +  KI + DG+    L+ F R  + L+    EG  I 
Sbjct: 56  VNFPKVHTICKVTAHQWFGYGKMKTLKIAITDGSANAWLVAFNR--DFLEKSLPEGSIIA 113

Query: 125 VTGKIKKLKNRIIMV--HPHYIFHNSQDVNFPLIE-------AVYSLPTGLSVDLFKKII 175
           VTGK +   N +         I  +    +F  I         +Y L  GL+  +++K +
Sbjct: 114 VTGKFETKYNELQSSSFEASRISFDGNLADFENIPVPDSAVIPIYPLTEGLTQKVYRKTV 173

Query: 176 VEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            +AL +    +   I   ++++++  + +EA   +H P+          AR+ L Y+EL 
Sbjct: 174 AQALKQYAKNISNEIPDKIIKERNLLNKSEAILFVHQPQT---LNQAQEARKTLIYEELY 230

Query: 235 AGQIALLLMRKQFK---------KEIGIPINVEG-----------------KIAQKILRN 268
             +  +L      +          E     +                       ++I  +
Sbjct: 231 LFEYKMLERALMHRGTLPLQDFVPEAYPYFSTPDSETGLEQIRNEFQKSLSPRQKQIFSS 290

Query: 269 IPFSPTKSQESAIKDILQDMSQKN------------------RMLRILQGDVGSGKTLVA 310
           + F  T  Q ++I ++ +D+ +                     M R+LQGDVGSGKTLV+
Sbjct: 291 LNFELTLDQMNSILEMNRDIDKSQTECNTMLNAPQKLSKPPFSMQRLLQGDVGSGKTLVS 350

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
               A  ++ GGQ  I+AP  +LA+QH E   K  +   I    +TGN+  + R+  L  
Sbjct: 351 FFVCARTIDYGGQCAILAPTELLARQHAENAAKLLEPAGIKTAFLTGNLKASGRQSLLNA 410

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL--------TQKATAPH 422
           +  G   I+IGTHALF  + QY  L L ++DEQHRFGV QR  +           A +P 
Sbjct: 411 LRDGNIDIVIGTHALFSRNTQYKNLQLAVIDEQHRFGVTQRESIISKGRISFKHMAHSPD 470

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L+M+ATPIP+TL LT+ GD+DIS I   P GR P+KT +        V E ++  L+ G
Sbjct: 471 LLMMSATPIPQTLALTAFGDLDISVIKTMPKGRLPVKTYLTVFGNERNVYEAIRKELNAG 530

Query: 483 KKAYWICPQIEEKKESNF------RSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVM 534
            +AY++ P+I E  ++        +S  E F+ L +        A+IHG+  D  +  ++
Sbjct: 531 HQAYFVYPRIAENPQAEQTEKTSLKSAEEMFDFLSKEVYPNFKCALIHGKTDDEQQAEIL 590

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F +G  ++L+ATTV+EVG+DV +A+ I IE+AE FGLA+LHQLRGRVGRG+  S C L
Sbjct: 591 KKFSSGNIQVLVATTVVEVGVDVPNATCIAIEHAERFGLAELHQLRGRVGRGKFQSYCFL 650

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
            Y   +++   +RL  L  + DGF IAEEDLK R  GE+ G  QSG     IA       
Sbjct: 651 TYSKNITETGISRLKALHQSNDGFFIAEEDLKLRGPGEVFGTAQSGYFALNIADLSRDKE 710

Query: 655 LLEIARKDAK-HILTQDP 671
           +L+ AR +A   +  ++P
Sbjct: 711 ILKTARYNALCQLKQRNP 728


>gi|208780398|ref|ZP_03247739.1| type III restriction enzyme, res subunit family [Francisella
           novicida FTG]
 gi|208743766|gb|EDZ90069.1| type III restriction enzyme, res subunit family [Francisella
           novicida FTG]
          Length = 679

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 224/665 (33%), Positives = 363/665 (54%), Gaps = 20/665 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           GVG+     L+K       N     DLL   P  + D      I+ +   +   I G ++
Sbjct: 8   GVGEATIKALAK------CNIHDPNDLLTIFPKDYKDTRVITPINHLVAGKRSLIQGRVT 61

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
            + +++   ++  +  +ND TG  +++ F      L  +      +   GK++       
Sbjct: 62  -NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILERSEYVRCYGKVE-FSLSPQ 118

Query: 138 MVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK 196
           MVHP +   +N +        AVY L   +   L  K+I++ L    V    I   LL++
Sbjct: 119 MVHPEWATVNNGECALKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLLRR 176

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
            +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K   K     + 
Sbjct: 177 FNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQAPQLF 236

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +      +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA  A
Sbjct: 237 LTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIAAYA 296

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R++L++I   + 
Sbjct: 297 AVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKIKDQKD 356

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT------APHVLLMTATP 430
            +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K++       PH L+++ATP
Sbjct: 357 CVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIISATP 416

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +  G++ YW+CP
Sbjct: 417 IPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYWVCP 476

Query: 491 QIEEKKESNFRSVVER-FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +EE +  +F   V+  +  L E     ++ +++G M   DK   M +FK     +L+AT
Sbjct: 477 LVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVLVAT 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+    RL
Sbjct: 537 TVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGKRRL 596

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           S+++ ++DGF +AE+DL+ R  G+ILG +QSG+  F       +    +   + A  +  
Sbjct: 597 SLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTFKTFDINEYYDNYDKVVEFADMLDK 656

Query: 669 QDPDL 673
             P+L
Sbjct: 657 DYPEL 661


>gi|269218657|ref|ZP_06162511.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269211768|gb|EEZ78108.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 706

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 215/679 (31%), Positives = 333/679 (49%), Gaps = 30/679 (4%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           GK+ +  L+K+            DLL + P     R     ++++ E    T+   ++  
Sbjct: 23  GKRTAAALAKL------ELRTVGDLLSHAPFRLAHRGELMPLADVREGEAATVIARVTDS 76

Query: 80  SSFQLQKRR--PYKILLNDGTGEITLLFFYRKTE---MLKNVFFEGRKITVTGKIKKLKN 134
               +  RR     + + DG  E+ L FF +              G   + +G +   + 
Sbjct: 77  RMRPMNSRRGYILTVRVADGVNELDLTFFGKSPRTLDFHAKRLASGVVASFSGTVSSYRG 136

Query: 135 RIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIE 190
            + + HP Y     +           +Y     L     +K +   L  L    +P+ + 
Sbjct: 137 GLQLTHPEYELVEDESDVAKIARPIPIYHATDRLPSWHIRKAVQSVLQALAPSDVPDPLP 196

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
            + L     PS  EA   +H P    D EW +  R R+A++E    Q AL     + ++ 
Sbjct: 197 GEYLAAHRLPSKFEAMRALHCPED--DEEWRAA-RLRMAHEEAYVLQAALAQRSHRARER 253

Query: 251 IGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
              P    +G +  +    +P+  T  Q     DI  D+++   M R+LQGDVGSGKT+V
Sbjct: 254 ATAPFPLADGGLLAQFDAGLPYELTSGQREVSADIAADLAKTTPMRRLLQGDVGSGKTVV 313

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           AL AM   ++ GGQA ++AP  +LA QH   I+         VE++TG++  A RR+ L 
Sbjct: 314 ALRAMLQVLDGGGQAALLAPTEVLAYQHMRTIEALVGPLA-PVELLTGSLTAAQRRRTLA 372

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           R+A GQA +I+GTHALF D +    L L +VDEQHRFGV QR  L       H L+MTAT
Sbjct: 373 RVASGQAGLIVGTHALFSDDVAIPFLGLAVVDEQHRFGVDQRDALA--GGGVHTLVMTAT 430

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAY 486
           PIPRT+ ++  GD+D+S + E PAGR  + T ++P ++   ++ V ERL   +  G +AY
Sbjct: 431 PIPRTIAMSVFGDLDVSVLRELPAGRAEVSTTVVPASKEAWVERVWERLGEEVRGGGRAY 490

Query: 487 WICPQIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            +CP+IE+  E     +   V              +  +HGRMS  +K   M+SF +G  
Sbjct: 491 VVCPRIEDDDEGLPLASVADVSAELREKSALAGIGVGTMHGRMSSDEKAEAMESFASGRA 550

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L++TTV+EVG+DV +A+ ++I +A+ FGL+QLHQLRGR+GRG     C+ +       
Sbjct: 551 PILVSTTVVEVGVDVPEATAMVILDADRFGLSQLHQLRGRIGRGTAPGVCLAVTSAEKGS 610

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLEIARK 661
            +  RL    +T DGF +AE DL+ R EG++LG  Q+G               ++E AR 
Sbjct: 611 LALRRLEAFASTTDGFALAELDLQLRSEGDVLGAAQAGRGSHLRFLSVAKDRKIIETARA 670

Query: 662 DAKHILTQDPDLTSVRGQS 680
            A+  +  DP+L   R  +
Sbjct: 671 AAREAVAADPELVDRRALA 689


>gi|167755898|ref|ZP_02428025.1| hypothetical protein CLORAM_01415 [Clostridium ramosum DSM 1402]
 gi|167704837|gb|EDS19416.1| hypothetical protein CLORAM_01415 [Clostridium ramosum DSM 1402]
          Length = 672

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 217/663 (32%), Positives = 338/663 (50%), Gaps = 29/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL   + +       L+      N N     DL+ + P  +      P I    +   V 
Sbjct: 6   PLQQLK-INTNRIELLN------NMNIYSVRDLVLHFPYRYESIEETPLI----DNEKVI 54

Query: 72  ITGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I G +        + R     ++IL      ++TL         LK    +   +T+ GK
Sbjct: 55  IEGVLIDEPKIFYKGRLSRLSFQILYKQEVYKVTL----FNRHFLKKNMTKEMPLTIIGK 110

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPE 187
                  I                   I  +YSL  G++   F+  + +AL+     + +
Sbjct: 111 YNSKTKSITASD----LRLKPLDEISGITPIYSLKEGITQKSFQGYVKKALNFYHGHIQD 166

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +  +LL K        A N+IH P    D      A   L Y+E L  Q+ +  ++   
Sbjct: 167 EVPTNLLIKHHLIHKELALNLIHFPSNNGDV---KEALRYLKYEEFLRFQLTMQYIKLSR 223

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K  +GI      +   + +  +PF  T  QE A  +++ D+ ++  M R +QGDVGSGKT
Sbjct: 224 KDNLGIKKQFNRQTLDEFIAQLPFELTFDQEQAALEVINDLQKETMMYRFVQGDVGSGKT 283

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +V  I + A   AG Q  +MAP  ILA QHY  + K  +   I + ++TG++    +++ 
Sbjct: 284 VVGAIGLYANYLAGYQGAMMAPTEILATQHYRSLIKLFKKIDINIALLTGHLSNKEKQRI 343

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
              + +G   I++GTHALFQ+ + Y KL LVI DEQHRFGV QR  L +K      ++M+
Sbjct: 344 YNDLENGTIDIVVGTHALFQEKVIYQKLGLVITDEQHRFGVNQRKALKEKGKQVDFMVMS 403

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL ++  GD+D+S I   P+GRKP+ T +   + +  ++ RLK  L+ G + Y 
Sbjct: 404 ATPIPRTLAISIYGDMDVSTIKTMPSGRKPVITEVFKTHSMKPILNRLKEYLASGGQCYV 463

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP +EE +  + R     +N +  +F     I ++HG+M D  K+ +M +FK    ++L
Sbjct: 464 VCPLVEESEAIDSRDATGIYNGMKAYFKEQYQIGLLHGKMDDETKDQIMAAFKANEIQIL 523

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVG+DV +A+ I+I NAE FGL+Q+HQLRGRVGR ++   C LL +   S+ ++
Sbjct: 524 VSTTVIEVGVDVSNANWIVIYNAERFGLSQIHQLRGRVGRSDQQGYCFLLSNSS-SQEAW 582

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL  L+N  DGF ++  DLK R  G+ILG +QSG+P F +       ++LEI+RKDA  
Sbjct: 583 ERLEFLRNCHDGFEVSYYDLKLRGPGDILGNQQSGLPVFSVGNIFEDANILEISRKDALE 642

Query: 666 ILT 668
           +L 
Sbjct: 643 LLE 645


>gi|313897578|ref|ZP_07831120.1| putative ATP-dependent DNA helicase RecG [Clostridium sp. HGF2]
 gi|312957530|gb|EFR39156.1| putative ATP-dependent DNA helicase RecG [Clostridium sp. HGF2]
          Length = 669

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 221/679 (32%), Positives = 364/679 (53%), Gaps = 31/679 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            L   R + +K +  L  +         R  DLL  +P  +     +P+ +   E+RI+ 
Sbjct: 2   ELKALR-ISEKKAEVLHSMQ------IMRAEDLLTCYPFRYEHLEAKPRDTWEKEDRIIF 54

Query: 72  ITGYISQHSSFQLQKRR---PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
               +++    + + ++    +K++L D   E+ +  F R      + F  G+ IT+ GK
Sbjct: 55  EAVIVNRARVIRFRGKQSVTRFKVMLEDE--ELDVSLFNRPWV---SAFTMGKVITIIGK 109

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPE 187
                +R+  +  ++     Q      I  VY++  G++     + I +A   L   +P+
Sbjct: 110 YD-GGSRVTALQYNFKPMKEQLG----IHPVYNVREGITQKELVRYIDKAWQALQNQIPD 164

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            I K  L+K       +A   IH+P      E    +   L Y+E L  Q+++  ++ + 
Sbjct: 165 VIPKPYLEKYRLIPRKQALYFIHHPSS---MEAVKQSLRHLKYEEFLKFQLSMQALKARD 221

Query: 248 KKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            + +              +  ++ FS T  Q   +++ILQD+S    M R++QGDVG GK
Sbjct: 222 TEMVQGSAKQFSMGDVMDLKHSLSFSLTNDQNRVVEEILQDLSSDKVMYRMVQGDVGCGK 281

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA   + A V A  QAV MAP  ILA+QH   +K+   +  I V+++  ++  A ++ 
Sbjct: 282 TMVAAFGLYACVLAHKQAVFMAPTEILAKQHLTNLKRLFSDFDITVDVLYSSLKPAQKKD 341

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LER+ H +  I++GTHALFQD ++YY L +V+ DEQHRFGV QR K+ +K      LLM
Sbjct: 342 VLERLKHNEIDILVGTHALFQDDVEYYDLGMVVADEQHRFGVAQRKKMLEKGEKVDFLLM 401

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL ++  GD+D+S I E P GR  + T +I    +  ++E +   + EG + Y
Sbjct: 402 SATPIPRTLAISLYGDMDVSTIQELPKGRSTVTTKLISSRSMSPILEAVLEKIDEGDQCY 461

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +CP IE+ ++ + R+V E ++ +         IA++HG+M+  +K++VM+ F +    +
Sbjct: 462 VVCPAIEKNEDMDMRNVTEIYDGMCASLGRRYRIALLHGKMNTQEKDAVMERFLHREVDI 521

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG+DV  A+I++I +A  FGL+Q+HQLRGRVGRG     C LL       +S
Sbjct: 522 LVSTTVIEVGVDVKAANIMVIYDAHRFGLSQIHQLRGRVGRGTRPGYCYLLSSTK-DPDS 580

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             RL + + T DGF IA  DL+ R  G+ILG +QSG+P F++       ++LE+AR+DA 
Sbjct: 581 LQRLKICEQTRDGFAIARADLQLRGPGDILGTRQSGVPGFILGDVIQDANILEVAREDAA 640

Query: 665 HILTQDPDLTSVRGQSIRI 683
            IL     L ++  + I++
Sbjct: 641 EILAH---LDTIGYEEIKM 656


>gi|328675493|gb|AEB28168.1| ATP-dependent DNA helicase RecG [Francisella cf. novicida 3523]
          Length = 679

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 221/665 (33%), Positives = 365/665 (54%), Gaps = 20/665 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           GVG+     L+K       N     DLL   P  + D      I ++   +   I G I+
Sbjct: 8   GVGEATVRALAK------YNLHSPNDLLTIFPKDYKDTRVVTPIDQLVAGKKSLIQGRIT 61

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
            + +++   ++  +  ++D TG  + + F      +  +  +   +   GK++   N   
Sbjct: 62  -NLTYKKFGKKFLRFNVSDSTGFCSAILFKFYPNQI-TMLEKSEYVRCYGKVELALN-PQ 118

Query: 138 MVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK 196
           M+HP + +  + +         VY L   +   L  K+I++ L    V    I   LL+K
Sbjct: 119 MIHPEWAVVKDGECALKQGFSPVYRLKK-IPDRLISKMIMKMLQDNKV-ENIIPAKLLRK 176

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
            +  S ++A   +H      D ++   A+  + ++E+LA ++A   + K   K     + 
Sbjct: 177 FNLISFSDALYYVHGLTNHIDEKYLHKAKFSIKFEEMLAYKLAEQNICKNTVKSQSPQLC 236

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +     ++    +P+  T +Q+ AIK+IL D+ + N M R+LQGDVG+GKT+VA +A  A
Sbjct: 237 LTATEQREFYDKLPYQLTSAQQRAIKEILGDIKKSNTMNRLLQGDVGAGKTIVATMAAYA 296

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AV++G Q  IMAP  ILA+QH+ F+ +Y  +  I V  + G +     R++LE I + + 
Sbjct: 297 AVKSGYQVAIMAPTEILAEQHFSFLCQYLASFDIKVIPLLGKLSAKQTRESLEIIKNEKD 356

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT------APHVLLMTATP 430
            +++GTHA+FQ+ ++Y  L LV+VDEQHRFGV+QRL L  K++       PH L+++ATP
Sbjct: 357 CVVVGTHAIFQERVEYCNLGLVVVDEQHRFGVEQRLALINKSSSNASKLTPHQLIISATP 416

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +S G++ YW+CP
Sbjct: 417 IPRTLAMTLYGNLKLSILDELPPKRKPIVTTVLNRAKKQNLIEKVKQAVSRGEQVYWVCP 476

Query: 491 QIEEKKESNFRSVVER-FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +EE +  +F   V+  +  L       ++ +++G M   DK   M +FK     +L+AT
Sbjct: 477 LVEESENLDFLQDVKTLYQELIVALGKENVGLVYGSMKSKDKLEEMAAFKAKKYAVLVAT 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+    RL
Sbjct: 537 TVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDRISEVGKKRL 596

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           S+++ ++DGF +AE+DL+ R  G+ILG +QSG+  F       +    +   + A  +  
Sbjct: 597 SLVRESQDGFYLAEKDLEIRGAGDILGKEQSGISIFKTFDINEYYDNYDKVVEFADLLDK 656

Query: 669 QDPDL 673
             P+L
Sbjct: 657 GYPEL 661


>gi|241667284|ref|ZP_04754862.1| ATP-dependent DNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875835|ref|ZP_05248545.1| ATP-dependent DNA helicase recG [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841856|gb|EET20270.1| ATP-dependent DNA helicase recG [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 679

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 222/649 (34%), Positives = 359/649 (55%), Gaps = 20/649 (3%)

Query: 15  TFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74
             +GVG+     L+K       N     DLL   P  + D  +   IS +  ++   I G
Sbjct: 5   EVKGVGEATIKALAK------YNLYNPDDLLTIFPKEYKDTRFVSTISSLVTDKKYLIEG 58

Query: 75  YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
            I+ + +++   ++  + ++ND TG  T++ F      +         +   GK+    N
Sbjct: 59  RIT-NLTYKKFGKKFLRFIVNDETGICTIVMFKFYPNQIF-ALENAEYVRCYGKVDLSLN 116

Query: 135 RIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
              MVHP + +  +           VY L   +S  +  +II+  L     + + + + L
Sbjct: 117 -PQMVHPEWAVIKDGVCAIKKEFSPVYRLKK-VSDKVVSRIILSCLKS-KSVADILPRQL 173

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
           L+     S ++A   +H    + D ++ + AR  + ++E+LA ++A   +RK        
Sbjct: 174 LRGFGLMSFSDALYYVHALTDSIDDKFINIARSSIKFEEMLAYKLAEESIRKSITNSSAP 233

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            +++E     +  + +P+  T++Q+  I +IL D+SQ + M+R+LQGDVG+GKT+VA +A
Sbjct: 234 RLSLEESQQNEFYKKLPYQLTQAQQRTITEILADISQSSAMIRLLQGDVGAGKTIVAAMA 293

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  AV++G QAV+MAP  ILA+QHY F   Y  +  I V  + G +     R++L  I  
Sbjct: 294 VYTAVKSGYQAVVMAPTEILAEQHYSFFASYMPDLDIDVVPLLGKLTAKQTRESLAVIKS 353

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT------QKATAPHVLLMT 427
            +  +I+GTHA+FQ+ ++Y  L LV+VDEQHRFGV+QRL L        +   PH L+++
Sbjct: 354 KKDCVIVGTHAVFQERVEYCNLGLVVVDEQHRFGVEQRLALINKSSLNDRHLVPHQLIIS 413

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  G++ +S + E P  RKPI T ++   +   +I ++K  +S G++ YW
Sbjct: 414 ATPIPRTLAMTLYGNLQLSILDELPPNRKPIVTTVLNRAKKQSLIGKVKEAVSRGEQVYW 473

Query: 488 ICPQIEEKKESNFRSVVERF-NSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP +EE +  +F   V+     L E     ++ +++G M   DK   M  FK    K+L
Sbjct: 474 VCPLVEESENMDFLQDVKTLHKELAEALGKENVGLVYGSMKSKDKIQEMSDFKAKKYKVL 533

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVG+DV +ASI+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+   
Sbjct: 534 VATTVIEVGVDVPNASIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDRISEVGK 593

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
            RLS+++ ++DGF +AE+DL+ R  G+ILG +QSG+  F       +  
Sbjct: 594 KRLSLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTFKTFDINEYYD 642


>gi|165924238|ref|ZP_02220070.1| ATP-dependent DNA helicase RecG [Coxiella burnetii RSA 334]
 gi|165916317|gb|EDR34921.1| ATP-dependent DNA helicase RecG [Coxiella burnetii RSA 334]
          Length = 581

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 231/531 (43%), Positives = 343/531 (64%), Gaps = 12/531 (2%)

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPV---LPEWIEKDLLQKKSFPSIAEAFNIIHN 211
            +  +Y    GLS   ++ +I ++L+ L     + E + +++      P++ EA   +H+
Sbjct: 35  RLTPIYPTTKGLSQTKWRHLINQSLNYLKDPNFVEELLPEEIRTPLRLPTLTEALFYVHS 94

Query: 212 PRKAKDFEWT----SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           P      +       P+++RLA++EL+A Q+ L   R   + +   PI ++    +K+ R
Sbjct: 95  PPHNAPVDLLQASKHPSQQRLAFEELVAQQLGLQQWRLLIRTQP-APILIKNNWQEKLKR 153

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + F  T +Q+  I +I QD+S+   MLR+LQGDVGSGKT+VA +A+  AVE G Q+ IM
Sbjct: 154 ALTFELTSAQKRVIGEINQDLSKPKPMLRLLQGDVGSGKTIVAAMAILKAVENGYQSAIM 213

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  +LA+QHY+  +++     I V  + G++  + R K L+ IA GQ  +IIGTHALFQ
Sbjct: 214 APTELLAEQHYQVFQRWFSPLGIRVGWLAGSLTPSAREKTLQEIASGQLSVIIGTHALFQ 273

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDID 444
            ++ + +L  +++DEQHRFGV QRL L +KAT    PH L+MTATPIPRTL +T+  D+D
Sbjct: 274 AAVTFQQLAFIVIDEQHRFGVHQRLALKEKATPNYHPHQLIMTATPIPRTLAMTAYADLD 333

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            S I E+P GRKPI TV+I  +R D+VIER+K    +GK+ YW+C  I + +     +  
Sbjct: 334 FSIIDEQPPGRKPITTVLISNSRRDKVIERIKKNCEQGKQVYWVCTLITDSEVLQCETAE 393

Query: 505 ERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
             F  L + FT+ S+ +IHGR++  +K+ VM +FKNG   LL+ATTVIEVG+DV +AS++
Sbjct: 394 ATFKKLQQSFTNLSVGLIHGRLTKEEKDVVMGAFKNGDIDLLVATTVIEVGVDVPNASLM 453

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +IEN+E  GLAQ+HQLRGRVGRGE+ S C+LLY  PLSKN+  RL++L++T+DGFL+A++
Sbjct: 454 VIENSERLGLAQIHQLRGRVGRGEQKSYCVLLYQEPLSKNARARLTLLRDTQDGFLVAQK 513

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           DL+ R  GE+LG +QSG+ +F IA    H  LL   RK A  IL +  + T
Sbjct: 514 DLELRGPGELLGARQSGLFRFRIADVIRHQHLLPAVRKAAFLILRRYSEFT 564


>gi|116671056|ref|YP_831989.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116611165|gb|ABK03889.1| ATP-dependent DNA helicase RecG [Arthrobacter sp. FB24]
          Length = 756

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 241/751 (32%), Positives = 376/751 (50%), Gaps = 86/751 (11%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           +GK+ +  + K +       T    LL Y P  ++ R     ISE+  +  VT+   +  
Sbjct: 13  IGKRSAAVIEKHL-----GITTVGGLLNYFPRRYLSRGELTPISEVPLDEEVTLIARVVS 67

Query: 79  HSSFQLQKRRPYK--ILLNDGT-------------------GEITLLFFYRKTEMLKNVF 117
           +S+  ++ RR     +++ D +                   G + + FF       K   
Sbjct: 68  NSTRAMRARRGTLTDVVITDDSATNHNSHGSAGRLPGAGVPGTLKVSFFNGYRA--KAEL 125

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA---------VYSLPTGLSV 168
             GR+   +GK+ +    + + +P ++  + +D + P ++          VY     L+ 
Sbjct: 126 LPGRRAMFSGKVTRYGGSLSLTNPDFLLLD-EDPDTPGMDPEKLAAMPIPVYPATAKLTS 184

Query: 169 DLFKKII--VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226
              +K+I  +     L VL + +   +  ++ F    EA+ +IH P    D++     R+
Sbjct: 185 WSIQKVISTLLDTVDLDVLDDPVPAGVSAREKFLPAPEAYRLIHTPEVPGDWQRA---RD 241

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDIL 285
           R  Y E L  Q AL   R Q   E           I     R +PF+ T  Q +  K + 
Sbjct: 242 RFRYQEALVLQAALARRRAQLAAEEATARRPVTDGILTAFDRQLPFTLTAGQSAVGKTLA 301

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
           +++SQ + M R+LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LA QH+E I++  
Sbjct: 302 EELSQDSPMNRLLQGEVGSGKTIVALRAMLQVVDAGGQAALLAPTEVLAAQHFESIRRTL 361

Query: 346 QNTQ------------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
                           + V ++TG+MP A R++A+   A G A I+IGTHAL  D++ +Y
Sbjct: 362 GPLSRDGLLGGSGPDTVQVTMLTGSMPTAARKQAMLDAASGTAGIVIGTHALLSDNVSFY 421

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            L L++VDEQHRFGV+QR  L  KA+  PH+L+MTATPIPRT+ +T  GD++ S + E P
Sbjct: 422 DLGLIVVDEQHRFGVEQRDALRAKASKPPHLLVMTATPIPRTVAMTVFGDLETSVLDELP 481

Query: 453 AGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-------- 500
           AGR PI T ++ +         +  R +  +  G + Y +CP+I E  + +F        
Sbjct: 482 AGRAPISTHVVGLAENPGWAGRIWSRSREEIDAGHQVYVVCPKIGEDDDGDFSPGEAEPS 541

Query: 501 ----------------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
                            SVVE            +A +HGR   + K + M SF     KL
Sbjct: 542 AADLEGDGPARELASVTSVVEHLQDEPALAGVPLAPLHGRQDPVLKSATMASFTANETKL 601

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG+DV +A++++I +A+ FG++QLHQLRGRVGRG    +C+L+        S
Sbjct: 602 LVSTTVIEVGVDVHNATLMVILDADRFGISQLHQLRGRVGRGGLPGTCLLVTTLEPGHPS 661

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDA 663
             RL  +  T DGF +++EDLK R+EG+ILG  QSG      + +   H++++  AR+DA
Sbjct: 662 RRRLDAVAATTDGFELSQEDLKLRREGDILGASQSGGRSTLKLLRVLEHEAVIAKARQDA 721

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           + I+  DP LT     +  I  YL    EAF
Sbjct: 722 QQIVAADPGLTDHSALAEAIDEYLNPEKEAF 752


>gi|319937588|ref|ZP_08011993.1| ATP-dependent DNA helicase [Coprobacillus sp. 29_1]
 gi|319807428|gb|EFW04037.1| ATP-dependent DNA helicase [Coprobacillus sp. 29_1]
          Length = 669

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 206/673 (30%), Positives = 354/673 (52%), Gaps = 20/673 (2%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++      N     DL+ ++P  +             E+  + I G +        + R
Sbjct: 12  KRLDILKLMNIESLEDLINHYPYRYDVIEETYP---TQEDDKIIIEGTLISPVKIFFRGR 68

Query: 88  -RPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145
                  + D    +  +  F R    L+    +   IT+ GK +K K    +       
Sbjct: 69  MSRMSFSVEDRYQNVYQVTIFNR--HFLRQYLKQMTIITIIGKCQKDK----ITASDIKI 122

Query: 146 HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAE 204
               ++    +  VYSL  GL+   F++ + +AL+ L   +  ++ ++ + K        
Sbjct: 123 KPISEIQ--GVHPVYSLKEGLTQKSFQQYVKKALNLLKGNIESFVPEEYIIKHQLIHKES 180

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
           A   IH P+  +D +        L Y+E L  Q+ +  +++Q   E+GI    + +  Q 
Sbjct: 181 ALWNIHFPQSQEDIKQALKY---LKYEEFLKFQLTMQTIKQQRTLEVGIAKRFDVQKFQS 237

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
            + ++P+  T+ Q++++K+I+ D+     M R LQGDVGSGKT+V+ +A+ A   AG Q 
Sbjct: 238 FILSLPYQLTQDQQTSVKEIVSDLQSPRMMYRFLQGDVGSGKTVVSSVALYANYLAGYQG 297

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  ILA QHY+ +  + ++T + + ++TG++    + +  E+I +G   +I+GTHA
Sbjct: 298 ALMAPTEILASQHYQTLLSFFKDTDVKIALLTGSLTNKEKERIYEQIQNGDIDMIVGTHA 357

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           LFQ  ++Y++L  VI DEQHRFGV+QR  L  K +    L+M+ATPIPRTL ++  GD+D
Sbjct: 358 LFQKKVEYHRLGFVITDEQHRFGVEQRKALKNKGSQVDFLIMSATPIPRTLAISMYGDMD 417

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           +S +   P GR P+ T  I  + +  +++ LK  L+ G + Y ICP +E+ +  + +S  
Sbjct: 418 VSTMKTMPKGRIPVVTKYIKSSSMKPILKDLKEYLASGGQCYVICPLVEDSEVLDAKSAS 477

Query: 505 ERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +   ++ ++F     + ++HG+M D +K+ +M  F+     +L++TTV+EVG+DV +A++
Sbjct: 478 QIAEAMQQYFRGTYQVGLLHGQMKDDEKDRIMQDFQKQKIHILVSTTVVEVGVDVKNANM 537

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           ++I NAE FG++QLHQLRGRVGRG + + C  +     SK +  RL  ++ + DGF I+ 
Sbjct: 538 MVIYNAERFGMSQLHQLRGRVGRGHQQAYCFFMSSST-SKEAIERLKYMEKSHDGFEISM 596

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
            DL+ R  GE+LG +QSG+P FL+A       +L +AR+DA  I+               
Sbjct: 597 YDLQIRGPGEVLGNRQSGLPTFLVADVFKDFPILNVAREDAMRIVEGYEKRNEYYHLMST 656

Query: 683 ILLYLYQYNEAFQ 695
           I   L + NE   
Sbjct: 657 IQEKLKENNEYVD 669


>gi|116329238|ref|YP_798958.1| ATP-dependent DNA helicase, recG-related [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116121982|gb|ABJ80025.1| ATP-dependent DNA helicase, recG-related [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 724

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 219/710 (30%), Positives = 369/710 (51%), Gaps = 53/710 (7%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L  P++  +GVG   +  L+ I            DLL + P  ++D      +  +  
Sbjct: 15  NELLLPVTVIKGVGSSKAAALASI------GIHTLQDLLNFFPRRYLDCSLTDNVL-LKT 67

Query: 67  ERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              VT+   +   +     K+  + +       E   + F+R     + +F  G  + VT
Sbjct: 68  GETVTLIVEVVD-AYLAHGKKSRFVVGAKTKNNERISIVFFRGVGFFQKIFQPGTTLVVT 126

Query: 127 GKIKKLKNRIIMVHPHYIFHNS----------------------------QDVNFPLIEA 158
           G+++  +    ++HP Y    +                            + ++   I  
Sbjct: 127 GRLEYFRG-FQLIHPDYEILANAIKPSYTINSTNLDKKSRQQEPELAELPEMIHAGRIIP 185

Query: 159 VYSL-----PTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
           +YS        GL    F+KI+  AL RL   + E +  +++++++     E++  IH P
Sbjct: 186 LYSSGEVLKSQGLDSRGFRKILYLALERLKGGISEILPNEIVKRRNLIPREESYREIHFP 245

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPF 271
                 +     + RL Y+EL    + +   +++ +K   +     + + A  + +N+ F
Sbjct: 246 TDEVSLDAA---KYRLKYEELFYFNLLIEHKKREREKIKRVLWPLPKSETADSVRKNLLF 302

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q SA++ I +   +   +  +LQGDVGSGKTLV+L+     ++   Q  ++AP  
Sbjct: 303 QLTEDQSSALRKIEELTKRDQPIAVLLQGDVGSGKTLVSLLTALRYMDNQIQVCMVAPTE 362

Query: 332 ILAQQHYEFIKKYTQNTQII-VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
           ILA+QHY+ I  +  N   + +E++ G  P+ +R + L RI  G    +IGTH++FQ+ +
Sbjct: 363 ILARQHYQTILSFLGNMPFLGIELLVGKEPKKNRYEKLYRIKKGDTLFVIGTHSVFQEDV 422

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            + +L LVI+DEQH+FGV QR  L  K   P +L MTATPIPRTL LT  GD+D+  I  
Sbjct: 423 LFSELGLVIIDEQHKFGVDQRETLRSKGKNPDILAMTATPIPRTLCLTLYGDLDLLTIKS 482

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           KP GR PI+T     NR + V + ++  +S G++ Y + P +EE ++ + +S +  +  L
Sbjct: 483 KPKGRMPIQTKWFQENRREGVYKSIRKYVSSGRQCYIVYPLVEESEKVDLKSCIAAYEHL 542

Query: 511 HEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                S   + ++HG+M   +K+ VM  F     ++L++TTVIEVGIDV +A++++IE+A
Sbjct: 543 KHEIFSDFEVGLVHGKMETEEKDRVMQEFSKNRIQILVSTTVIEVGIDVPNATVMMIEHA 602

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           + FG++QLHQLRGRVGRG+E S CIL+    +++++  RL  + N  DGF ++E DL+ R
Sbjct: 603 DRFGISQLHQLRGRVGRGDEESFCILMTDSKVTEDAKVRLDAMVNFSDGFALSEIDLQLR 662

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP-DLTSVR 677
             GE++G++QSG+P F IA       L+E+ R+DA  IL  +P DL    
Sbjct: 663 GPGELMGVRQSGLPDFRIADLRKDSKLIELTREDA--ILFGNPGDLEKEE 710


>gi|56708621|ref|YP_170517.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110671092|ref|YP_667649.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457814|ref|ZP_03666287.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371254|ref|ZP_04987256.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875485|ref|ZP_05248195.1| recG, ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56605113|emb|CAG46234.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321425|emb|CAL09617.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569494|gb|EDN35148.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841484|gb|EET19920.1| recG, ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159858|gb|ADA79249.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 679

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 224/665 (33%), Positives = 364/665 (54%), Gaps = 20/665 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           GVG+     L+K       N     DLL   P  + D      I+ +   +   I G ++
Sbjct: 8   GVGEATIKALAK------YNIHDPNDLLTIFPKDYKDTRVITPINHLVAGKRSLIQGRVT 61

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
            + +++   ++  +  +ND TG  +++ F      L  +  +   +   GK++       
Sbjct: 62  -NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILEKSEYVRCYGKVE-FSLSPQ 118

Query: 138 MVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK 196
           MVHP +   +N +        AVY L   +   L  K+I++ L    V    I   LL++
Sbjct: 119 MVHPEWATVNNGECALKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLLRR 176

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
            +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K   K     + 
Sbjct: 177 FNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQAPQLF 236

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +      +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA  A
Sbjct: 237 LTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIAAYA 296

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R++L+RI   + 
Sbjct: 297 AVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDRIKDQKD 356

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT------APHVLLMTATP 430
            +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K++       PH L+++ATP
Sbjct: 357 CVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIISATP 416

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +  G++ YW+CP
Sbjct: 417 IPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYWVCP 476

Query: 491 QIEEKKESNFRSVVER-FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +EE +  +F   V+  +  L E     ++ +++G M   DK   M +FK     +L+AT
Sbjct: 477 LVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVLVAT 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+    RL
Sbjct: 537 TVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGKRRL 596

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           S+++ ++DGF +AE+DL+ R  G+I+G +QSG+  F       +    +   + A  +  
Sbjct: 597 SLVRESQDGFYLAEKDLEIRGAGDIIGKEQSGVSTFKTFDINEYYDNYDKVVEFADMLDK 656

Query: 669 QDPDL 673
             P+L
Sbjct: 657 HYPEL 661


>gi|254526118|ref|ZP_05138170.1| Type III restriction enzyme, res subunit family [Prochlorococcus
           marinus str. MIT 9202]
 gi|221537542|gb|EEE39995.1| Type III restriction enzyme, res subunit family [Prochlorococcus
           marinus str. MIT 9202]
          Length = 618

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 222/607 (36%), Positives = 345/607 (56%), Gaps = 20/607 (3%)

Query: 93  LLNDGTGEITLLFFYRKTEM--------LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
           +++D T  I +  F+              K+++  G K+ ++GK+K  +     V P   
Sbjct: 4   VVSDETSSIKVTKFFLGRRFRSYSFFSSQKSLYTPGTKLAISGKVKLTEYGKTFVDPQIE 63

Query: 145 FHNSQDVNF---PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPS 201
                + NF     I  +YSL   LS   F K++ + L      PE + K  L   S  S
Sbjct: 64  ILKGINDNFNYSGKILPLYSLGEALSNMSFIKLMKKVLIYAKQYPEILNKKQLDSLSLLS 123

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ-FKKEIGIPINVEGK 260
             E+   IH P   +    +   ++RL +DEL   QI  LL +++  K  I   +  +  
Sbjct: 124 KGESLINIHFPLTQQALLES---KKRLVFDELFLLQIKFLLRKRKTNKNVISQQLPQKKS 180

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           + ++ L   PF  TKSQE+ + +I +D+S    M R+LQGDVGSGKT++A+ ++   +E 
Sbjct: 181 LLKEFLNTFPFELTKSQENVLNEIKKDLSNPVPMSRLLQGDVGSGKTIIAIASLLLVIEK 240

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             Q   M P  +LA+QHY+ + KY     + VE++TGN PQ  R++    + +G   I++
Sbjct: 241 NLQGAFMVPTEVLAEQHYKNLLKYLDPLLVSVELLTGNTPQKKRKEIFSNLKNGLVDILV 300

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTHALF+D + +  L +V++DEQHRFGV QR +L  K    ++L MTATPIPRTL L+  
Sbjct: 301 GTHALFEDKVIFNGLGMVVIDEQHRFGVSQRNRLLNKGENTNLLSMTATPIPRTLALSIY 360

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           GD+D+S+ITE P GR PI T II  + +  + + +   +++G++AY I P IE+ ++ N 
Sbjct: 361 GDLDVSQITELPPGRVPITTKIISEDDLSNLFKIVDDEITKGRQAYVILPLIEDSEKMNL 420

Query: 501 RSVVERFNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            S  + F  L E   F   + ++HG+++  +K  V++SF +    +L++TTVIEVGIDV 
Sbjct: 421 SSAKKIFKYLSEEVFFNKKVGLLHGKLNSQEKNEVINSFIDNEINILVSTTVIEVGIDVP 480

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A+I+II N++ FGL+QLHQLRGRVGRG   S C L+        +     VL+ + DGF
Sbjct: 481 NATIMIIYNSDRFGLSQLHQLRGRVGRGSTKSFCYLVTSDKNGLENKRLC-VLQKSNDGF 539

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IAE+DL+ R  G+ILG +QSG+P F++     +  L++ AR++A  I++ DPDL     
Sbjct: 540 YIAEKDLELRGPGQILGYRQSGLPDFVLDNLPDNKFLIDKAREEAIKIVSDDPDL--KEN 597

Query: 679 QSIRILL 685
             IR +L
Sbjct: 598 IVIRNIL 604


>gi|134301433|ref|YP_001121401.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049210|gb|ABO46281.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 679

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 224/665 (33%), Positives = 364/665 (54%), Gaps = 20/665 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           GVG+     L+K       N     DLL   P  + D      I+ +   +   I G ++
Sbjct: 8   GVGEATIKALAK------YNIHDPNDLLTIFPKDYKDTRVITPINHLVAGKRSLIQGRVT 61

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
            + +++   ++  +  +ND TG  +++ F      L  +  +   +   GK++       
Sbjct: 62  -NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILEKSEYVRCYGKVE-FSLSPQ 118

Query: 138 MVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK 196
           MVHP +   +N +        AVY L   +   L  K+I++ L    V    I   LL++
Sbjct: 119 MVHPEWATVNNGECALKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLLRR 176

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
            +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K   K     + 
Sbjct: 177 FNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQAPQLF 236

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +      +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA  A
Sbjct: 237 LTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIAAYA 296

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R++L+RI   + 
Sbjct: 297 AVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDRIKDQKD 356

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT------APHVLLMTATP 430
            +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K++       PH L+++ATP
Sbjct: 357 CVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIISATP 416

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +  G++ YW+CP
Sbjct: 417 IPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYWVCP 476

Query: 491 QIEEKKESNFRSVVER-FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +EE +  +F   V+  +  L E     ++ +++G M   DK   M +FK     +L+AT
Sbjct: 477 LVEESENMDFLQAVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVLVAT 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+    RL
Sbjct: 537 TVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGKRRL 596

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           S+++ ++DGF +AE+DL+ R  G+I+G +QSG+  F       +    +   + A  +  
Sbjct: 597 SLVRESQDGFYLAEKDLEIRGAGDIIGKEQSGVSTFKTFDINEYYDNYDKVVEFADMLDK 656

Query: 669 QDPDL 673
             P+L
Sbjct: 657 HYPEL 661


>gi|237734862|ref|ZP_04565343.1| ATP-dependent DNA helicase [Mollicutes bacterium D7]
 gi|229382190|gb|EEO32281.1| ATP-dependent DNA helicase [Coprobacillus sp. D7]
          Length = 672

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 217/663 (32%), Positives = 337/663 (50%), Gaps = 29/663 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL   + +       L+      N N     DL+ + P  +      P I    +   V 
Sbjct: 6   PLQQLK-INTNRIELLN------NMNIYSVRDLVLHFPYRYESIEETPLI----DNEKVI 54

Query: 72  ITGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I G +        + R     ++IL      ++TL         LK    +   +T+ GK
Sbjct: 55  IEGVLIDEPKIFYKGRLSRLSFQILYKQEVYKVTL----FNRHFLKKNMTKEMPLTIIGK 110

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPE 187
                  I                   I  +YSL  G++   F+  + +AL+     + +
Sbjct: 111 YNSKTKSITASD----LRLKPLDEISGITPIYSLKEGITQKSFQGYVKKALNFYHGHIQD 166

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +  +LL K        A N+IH P    D      A   L Y+E L  Q+ +  ++   
Sbjct: 167 EVPTNLLIKHHLIHKELALNLIHFPSNNDDV---KEALRYLKYEEFLRFQLTMQYIKLSR 223

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K  +GI      +   + +  +PF  T  QE A  +++ D+ ++  M R +QGDVGSGKT
Sbjct: 224 KDNLGIKKQFNRQTLDEFIAQLPFELTFDQEQAALEVINDLQKETMMYRFVQGDVGSGKT 283

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +V  I + A   AG Q  +MAP  ILA QHY  + K  +   I + ++TG++    +++ 
Sbjct: 284 VVGAIGLYANYLAGYQGAMMAPTEILATQHYRSLIKLFKKIDINIALLTGHLSNKEKQRI 343

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
              + +G   I++GTHALFQ+ + Y KL LVI DEQHRFGV QR  L +K      ++M+
Sbjct: 344 YNDLENGTIDIVVGTHALFQEKVIYQKLGLVITDEQHRFGVNQRKALKEKGKQVDFMVMS 403

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL ++  GD+D+S I   P+GRKP+ T +   + +  ++ RLK  L+ G + Y 
Sbjct: 404 ATPIPRTLAISIYGDMDVSTIKTMPSGRKPVITEVFKTHSMKPILNRLKEYLASGGQCYV 463

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP +EE +  + R     +N +  +F     I ++HG+M D  K+ +M +FK    ++L
Sbjct: 464 VCPLVEESEAIDSRDATGIYNGMKAYFKEQYQIGLLHGKMDDETKDQIMAAFKANEIQIL 523

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTVIEVG+DV +A+ I+I NAE FGL+Q+HQLRGRVGR ++   C LL +   S+ + 
Sbjct: 524 VSTTVIEVGVDVSNANWIVIYNAERFGLSQIHQLRGRVGRSDQQGYCFLLSNSS-SQEAL 582

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            RL  L+N  DGF ++  DLK R  G+ILG +QSG+P F +       ++LEI+RKDA  
Sbjct: 583 ERLEFLRNCHDGFEVSYYDLKLRGPGDILGNQQSGLPVFSVGNIFEDANILEISRKDALE 642

Query: 666 ILT 668
           +L 
Sbjct: 643 LLE 645


>gi|307329828|ref|ZP_07608983.1| ATP-dependent DNA helicase RecG [Streptomyces violaceusniger Tu
           4113]
 gi|306884557|gb|EFN15588.1| ATP-dependent DNA helicase RecG [Streptomyces violaceusniger Tu
           4113]
          Length = 736

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 225/738 (30%), Positives = 367/738 (49%), Gaps = 67/738 (9%)

Query: 25  LFLSKIINCGNA-------NETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
             L K++    A       +     DLL ++P  + +R    ++S++  +  VT+   ++
Sbjct: 4   EPLKKVLGGNTAKVMADHLDLHTVGDLLHHYPRRYAERGELTRLSDLPLDEHVTVVAQVA 63

Query: 78  --QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
             +  +F   + R  ++ + DG+G + L+FF +     +     G +    GK+     +
Sbjct: 64  DARVHTFNGGRGRRLEVTITDGSGRLQLVFFGKGVHKPRTELQPGTRAMFAGKVSVFNRK 123

Query: 136 IIMVHPHYIFHNSQDVNFPL------IEAVYSLPTGLSVDLFKKIIVEAL-------SRL 182
             + HP +    ++     +      +  +Y     +     ++ I   L       + L
Sbjct: 124 RQLAHPEFKALGAESGAEAVEAFAHQLLPLYPACKQMESWQIQQAIDTVLGPAGHEETAL 183

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             L + +   L + +   ++ EA   IH P    D    + ARERL +DE    Q+AL  
Sbjct: 184 AGLVDPLPDSLREGRGLATLPEALRKIHRPATKTDI---AMARERLKWDEAFVLQVALAR 240

Query: 243 MRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            R+   +    P   V   +       +PF+ T  Q    ++I  D++  + M R+LQG+
Sbjct: 241 RRRADAQLPAAPRKPVPDGLLTAFDARLPFTLTDGQRRVSEEIFADLATDHPMHRLLQGE 300

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQI 350
           VGSGKT+VAL AM   V+AGGQA ++AP  +LAQQH+  I +                  
Sbjct: 301 VGSGKTMVALRAMLGVVDAGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGAEQGT 360

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V ++TG+M  A RR+AL  +  G+A I+IGTHAL +D +Q+  L LV+VDEQHRFGV+Q
Sbjct: 361 KVVLLTGSMGAAARRQALLDLVTGEAGIVIGTHALIEDKVQFNDLGLVVVDEQHRFGVEQ 420

Query: 411 RLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           R  L  +    PH+L+MTATPIPRT+ +T  GD++ S + + P+GR PI + ++P     
Sbjct: 421 RDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPSGRSPIASHVVPAKDKP 480

Query: 470 ----EVIERLKVVLSEGKKAYWICPQI--------------------EEKKESNFRSVVE 505
                  ER++  ++ G + Y +CP+I                    +E ++    +VVE
Sbjct: 481 HFLTRAWERVREEVAAGHQGYVVCPRIGDDIGDEGETPKGAASPSPEDEAEKRPPLAVVE 540

Query: 506 RFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
               L +   S   + ++HGRM    K+ VM  F  G   +L+ATTVIEVG++V +A+ +
Sbjct: 541 VAEQLTKGPLSGLRVEVLHGRMQPEAKDDVMRRFAAGEVDVLVATTVIEVGVNVPNATAM 600

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +I +A+ FG++QLHQLRGRVGRG     C+L+   P       RL  +  T DGF ++  
Sbjct: 601 VIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVSDMPEGSPPRARLGAVAATLDGFELSRI 660

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           DL+QR+EG++LG  QSG+   L     + D  ++  AR++A  I+  DP+LT      +R
Sbjct: 661 DLEQRREGDVLGQAQSGVRSSLRVLAVIDDEEVIAAAREEAAAIVADDPELTGYP--ELR 718

Query: 683 ILLYLYQYNEAFQFIRAG 700
             L      E  +++  G
Sbjct: 719 TALDALLDKEREEYLDKG 736


>gi|308234564|ref|ZP_07665301.1| ATP-dependent DNA helicase RecG [Atopobium vaginae DSM 15829]
 gi|328944162|ref|ZP_08241627.1| DNA helicase RecG [Atopobium vaginae DSM 15829]
 gi|327492131|gb|EGF23905.1| DNA helicase RecG [Atopobium vaginae DSM 15829]
          Length = 749

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 211/722 (29%), Positives = 328/722 (45%), Gaps = 59/722 (8%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L APL     V    +   S +            DL+   P  ++D      I E +  
Sbjct: 19  ALDAPLDMLPYVTPARAKLFSNL------GIHTLRDLILRIPRRYLDFSRHVSILEAAVN 72

Query: 68  RIVTITGYISQHS-SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             VTI+  I + +           ++ + D  G + + FF  +   L   +  G  + + 
Sbjct: 73  DTVTISCVIDRINLKRPRPHLSIVEMYVTDTIGIMRISFF--RQPWLAKAYHVGDVVALL 130

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNF------------------------------PLI 156
           GK++       M  P     ++ D                                   I
Sbjct: 131 GKVEYSYGFKCMNSPFIELIHAADARPTDGHAADTHAADAHAQDKSALELLPNARLDMHI 190

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
             VY+L  GLS   +++II   L ++  L + I    L +      + A   IH P    
Sbjct: 191 LPVYALCDGLSAAWYRRIIKICLHKILPLVDCIPSVYLARNRLMGYSTAIQQIHMPTS-- 248

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
                  AR R AY+EL   Q+AL         +  I   + G   +   + +PF  +  
Sbjct: 249 -MSAQDAARRRFAYNELFFLQLALRARTSVEDIQDPIQHCINGSHLKNFYKALPFELSAE 307

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+SA  D+L DM  K  M R+L GDVG+GKT+V  +  A   +   QA ++AP  +LAQQ
Sbjct: 308 QQSAAHDLLHDMQAKTCMNRLLLGDVGTGKTVVCALGFAVCADTFTQAAMLAPTSVLAQQ 367

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           + E I        I   ++T    ++ R   L ++  G   +I GT +L  D +Q++KL 
Sbjct: 368 YAEKIGTLLTKLSISWALLTSATTKSERADILSQLQTGSVQVIFGTTSLLSDDVQFHKLS 427

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            +++DEQHRFGV QRL L QK+    +L M+ATPIPRTL L+  GD+  S I  KP    
Sbjct: 428 YIVIDEQHRFGVHQRLALRQKSPFADLLAMSATPIPRTLALSFYGDLTCSFIKHKPFSTA 487

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---------------R 501
            + T ++    +    + +   + +G++AY ICP I+ +                     
Sbjct: 488 KVTTKVLANENVSVAYDAVAACIEQGQQAYIICPLIDNQDARTTVDDIAPNAQSSAQTLH 547

Query: 502 SVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           S  + F SL     S   I ++ GRM   +K+ VM  F+     +L+ATT++EVG+DV  
Sbjct: 548 SAQQTFESLKRSSFSAYRIGLLTGRMDSDEKDRVMSQFRAHKLDVLVATTIVEVGVDVPR 607

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A  +II +A+ FGLA LHQLRGRVGRG   +   L+        +  RL +L+NT DGF 
Sbjct: 608 ACAMIILDADRFGLATLHQLRGRVGRGSLAAQVYLVTASKKHSLARRRLDILENTFDGFE 667

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
           ++++DL+ R+EG+ILG +QSG     +        L+E A +D   +L  DPDL+ V+ +
Sbjct: 668 LSQKDLELRREGDILGYRQSGTLTLRVCDMVRDMDLIEAAHRDVGELLDGDPDLSQVQHR 727

Query: 680 SI 681
           ++
Sbjct: 728 AL 729


>gi|295815286|ref|YP_001250813.3| ATP dependent DNA helicase RecG [Legionella pneumophila str. Corby]
 gi|148281379|gb|ABQ55467.1| ATP dependent DNA helicase RecG [Legionella pneumophila str. Corby]
          Length = 616

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 227/594 (38%), Positives = 344/594 (57%), Gaps = 17/594 (2%)

Query: 89  PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS 148
                + D TG + L FF+   + +         I   G+++   N++ M+HP Y   + 
Sbjct: 1   MLNCYVEDKTGIVKLRFFHFNKQQI-QALNNSAMIRAFGEVRGFNNQLEMIHPEYQLIDQ 59

Query: 149 QDV--NFPLIEAVYSLPTGLSVDLFKKIIVEALSR----LPVLPEWIEKDLLQKKSFPSI 202
           +        +  +Y    GL+    ++++  AL +    L  L EW+ +  LQ+ +F  +
Sbjct: 60  ESDFHVEETLTPIYPSTQGLTQTRLRQLVKIALEQSEHELHQL-EWMSEKQLQENNFYDL 118

Query: 203 AEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258
            EA  ++HNP              PA +RL +DELLA Q+++   R+   K     I  +
Sbjct: 119 GEAIKLLHNPPPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFARQSRSKLQAPAILFD 178

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             I ++ + ++PFS T +Q+   K+I  D++Q   MLR+LQGDVG+GKT++A +A   A+
Sbjct: 179 NAIHKRFIESLPFSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVGAGKTIIAALAALQAI 238

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G Q   MAP  +L++QH   + K+ +   I V  ++G M    R+ AL  +      +
Sbjct: 239 SQGFQVAFMAPTDLLSEQHTNSLSKWLEPIGINVLRLSGKMKTTERKNALAALQDNSCQL 298

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRT 434
           I+GTHALFQ+ +++ +L LVI+DEQHRFGV+QRL L QK       PH LLMTATPIPRT
Sbjct: 299 IVGTHALFQEQVEFARLGLVIIDEQHRFGVEQRLLLQQKGQLNQLIPHQLLMTATPIPRT 358

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L ++    +DIS I E P GR PI T ++  ++ + +IERL+  ++ GK+AYW+C  IEE
Sbjct: 359 LSMSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAIANGKQAYWVCTLIEE 418

Query: 495 KKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            ++    +  +    L E    + +  +HGRM   +KE+ M +FK G    ++ATTVIEV
Sbjct: 419 SEKLQCIAATDTSKKLQEQLSFARVRQVHGRMKAHEKEATMAAFKQGEIDKVVATTVIEV 478

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+LLY  PLS+    RL ++++
Sbjct: 479 GVDVPNASLMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSPLSQQGAERLKIMRS 538

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           T DGFLI+E+DL+ R  GEILG +Q+G  +F IA  +   +L  I R  AK ++
Sbjct: 539 TTDGFLISEKDLELRGSGEILGTRQTGFRQFKIANLQRDKTLFAILRPIAKQLM 592


>gi|15639674|ref|NP_219124.1| ATP-dependent DNA helicase RecG [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025912|ref|YP_001933684.1| ATP-dependent DNA helicase RecG [Treponema pallidum subsp. pallidum
           SS14]
 gi|3914635|sp|P96130|RECG_TREPA RecName: Full=ATP-dependent DNA helicase recG
 gi|1732243|gb|AAB38707.1| RecG [Treponema pallidum]
 gi|3322991|gb|AAC65656.1| DNA recombinase (recG) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189018487|gb|ACD71105.1| DNA recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|291060053|gb|ADD72788.1| ATP-dependent DNA helicase RecG [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 686

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 219/693 (31%), Positives = 365/693 (52%), Gaps = 42/693 (6%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            +  +  P+S  +G GK     L ++      N +   D+L Y P  + DR      S+ 
Sbjct: 2   LIGEIKEPVSVLKGTGKVVLAQLERL------NISTIGDILSYWPRLWEDRTQEQMFSQW 55

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFEGRKI 123
           +    + +   ++ H  F   K +  K+++ DG G +  LL F R    L  +F  G + 
Sbjct: 56  TLAHRLQVRVSVTAHCWFGFGKSKTLKLVVQDGQGCVAELLCFRRN--FLHFMFPVGSEA 113

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL- 182
            V G   +    +          +  +     I  VY L  GL     + +I  A+ +  
Sbjct: 114 VVYGSFYEKDGLLESSSFDIEKIDCIE---KKILPVYPLTKGLKQMKLRMLICAAMDQWI 170

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             +   + K +L+K    +  +    +H PR   D    +  +  L ++E  + Q+ + +
Sbjct: 171 GTVDSELPKPILEKYHLLTKRDVLLSMHTPRTLDDV---AKGKHSLIFEEFFSLQMTIGM 227

Query: 243 MRKQFKKEIGIPINVEGKI-------------AQKILRNIPFSPTKSQESAIKDILQDMS 289
              Q +  + +      +               +K+ R +PF  T  Q+  I +I QD+ 
Sbjct: 228 RSLQKRGRLPLTQGESDQQSAIPSVVSELSLLQKKLHRCLPFELTVDQKRVITEITQDLE 287

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           ++  M R++QGDVGSGKTLVA  +    +E GGQ  ++AP  +LA+QH +   +      
Sbjct: 288 REEPMARLIQGDVGSGKTLVAFFSCLKIIEQGGQVALLAPTELLARQHADTAARLLAPIG 347

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           I +  +TGN+    R   LE +  G+ ++++GTHALF  S++Y+ L LVI+DEQHRFGV 
Sbjct: 348 IRLAFLTGNVKSEGRAYLLEALVAGEINLVVGTHALFSKSVRYHDLRLVIIDEQHRFGVL 407

Query: 410 QRLKLTQ-------KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           QR  L Q       +   PH+++M+ATPIPRTL L+  GD+DIS I   P GRKP+ T I
Sbjct: 408 QRSALIQKGREGNPQGKTPHIIMMSATPIPRTLALSVFGDLDISIIKSMPGGRKPVITYI 467

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAII 521
               + ++V E +   + +G++AY+I P+I +   ++ +SV   +  L  +F   ++A+I
Sbjct: 468 ARKTKAEKVYEFVGNEIEKGRQAYFIYPRIHDIGLTDLKSVQCMYMYLKNYFARYAVAMI 527

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           H +M++ +++ +M  F  GT  +L+AT+V+EVG+DV +A+ I+IE+AE FGL+ LHQLRG
Sbjct: 528 HSKMTEEEQQRIMKYFSEGTVHILVATSVVEVGVDVPNANCIVIEHAERFGLSALHQLRG 587

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI----K 637
           RVGRG+  S C L++   +++ +  RL ++ +T DGF+IAEEDLK R  G++ G     +
Sbjct: 588 RVGRGDVQSYCFLMHGDEMTECAKRRLKIMGSTADGFVIAEEDLKLRGPGDV-GDTKNFE 646

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           QSG   F +A P     +L++AR+ A  +L ++
Sbjct: 647 QSGYSGFRVADPVRDYPILQVAREAAFELLRKE 679


>gi|167626709|ref|YP_001677209.1| ATP-dependent DNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596710|gb|ABZ86708.1| ATP-dependent DNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 679

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 222/649 (34%), Positives = 358/649 (55%), Gaps = 20/649 (3%)

Query: 15  TFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74
             +GVG+     L+K       N     DLL   P  + D  +   IS +  ++   I G
Sbjct: 5   EVKGVGEATIKALAK------YNLYNPDDLLTIFPKEYKDTRFVSTISSLVTDKKYLIEG 58

Query: 75  YISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
            I+ + +++   ++  + ++ND TG  T++ F      +  V      +   GK+    N
Sbjct: 59  RIT-NLTYKKFGKKFLRFIVNDETGICTIVMFKFYPNQIV-VLENAEYVRCYGKVDLSLN 116

Query: 135 RIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
              MVHP + +  +           VY L   +S  +  ++I+  L     + + + + L
Sbjct: 117 -PQMVHPEWAVIKDGVCAIKKEFSPVYRLKK-VSDKVVSRVILSCLKS-KSVADILPRQL 173

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
           L      S ++A   +H    + D +  + AR  + ++E+LA ++A   +RK        
Sbjct: 174 LLGFGLMSFSDALYYVHALTDSIDDKLINIARSSIKFEEMLAYKLAEESIRKSITNSSAP 233

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            +++E     +  + +P+  T++Q+  I +IL D+SQ + M+R+LQGDVG+GKT+VA +A
Sbjct: 234 RLSLEESQQNEFYKKLPYQLTQAQQRTITEILADISQSSPMIRLLQGDVGAGKTIVAAMA 293

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  AV++G QAV+MAP  ILA+QHY F   Y  +  I V  + G +     R++L  I  
Sbjct: 294 VYTAVKSGYQAVVMAPTEILAEQHYSFFVSYMADLDIDVVPLLGKLTAKQTRESLAVIKS 353

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT------QKATAPHVLLMT 427
            +  +I+GTHA+FQ+ ++Y  L LV+VDEQHRFGV+QRL L        +   PH L+++
Sbjct: 354 KKDCVIVGTHAVFQERVEYCNLGLVVVDEQHRFGVEQRLALINKSSLNDRHLVPHQLIIS 413

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T  G++ +S + E P  RKPI T ++   +   +I ++K  +S G++ YW
Sbjct: 414 ATPIPRTLAMTLYGNLQLSILDELPPNRKPIVTTVLNRAKKQSLIGKVKEAVSRGEQVYW 473

Query: 488 ICPQIEEKKESNFRSVVERF-NSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +CP +EE +  +F   V+     L E     ++ +++G M   DK   M  FK    K+L
Sbjct: 474 VCPLVEESENMDFLQDVKTLHKELAEALGKENVGLVYGSMKSKDKIQEMSDFKAKKYKVL 533

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVG+DV +ASI+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+   
Sbjct: 534 VATTVIEVGVDVPNASIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDRISEVGK 593

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
            RLS+++ ++DGF +AE+DL+ R  G+ILG +QSG+  F       +  
Sbjct: 594 KRLSLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTFKTFDINEYYD 642


>gi|313618310|gb|EFR90360.1| ATP-dependent DNA helicase RecG [Listeria innocua FSL S4-378]
          Length = 580

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 215/576 (37%), Positives = 335/576 (58%), Gaps = 12/576 (2%)

Query: 114 KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK 173
           KN    G  +T++GK  K + +I           +++     +E VY L   L     +K
Sbjct: 1   KNKISVGETVTISGKWDKSRAQITASKIKIGAVENEEE----LEGVYRLKGTLRNKTMQK 56

Query: 174 IIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
               A       + E I  +LL+K      +EA  ++H P+  ++      AR R+ Y+E
Sbjct: 57  YTRLAFDSYSKDIEEVIPANLLEKYQLMDRSEAVRVLHFPKNNEEL---KQARRRMVYEE 113

Query: 233 LLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            L  Q+ +   RK + +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM   
Sbjct: 114 FLLFQLKMQFFRKIEREKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSH 173

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R+LQGDVGSGKT+VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I 
Sbjct: 174 FHMNRLLQGDVGSGKTVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDIT 233

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V ++T ++    RR+ L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR
Sbjct: 234 VGLLTSSVKGKQRRELLAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQR 293

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             L +K   P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D V
Sbjct: 294 RILREKGEYPDVLFMTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRV 353

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDID 529
           I  ++  + +G + Y ICP IEE ++ + ++ ++ FN L   + +     ++HG++   D
Sbjct: 354 IGFMEKEIDKGHQVYIICPLIEESEKLDVQNAIDVFNILQNKWGTKYVPGLMHGKLLPAD 413

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE +M  F +     L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + 
Sbjct: 414 KEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQ 473

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S CIL+  P  ++    R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A  
Sbjct: 474 SYCILIADPK-TEVGKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADM 532

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                +LEIAR+DA H++ ++  L +     +  LL
Sbjct: 533 VHDYRVLEIARQDAVHMIFEENMLENKTYDKLVALL 568


>gi|288818616|ref|YP_003432964.1| ATP-dependent DNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|288788016|dbj|BAI69763.1| ATP-dependent DNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|308752207|gb|ADO45690.1| ATP-dependent DNA helicase RecG [Hydrogenobacter thermophilus TK-6]
          Length = 784

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 234/672 (34%), Positives = 367/672 (54%), Gaps = 33/672 (4%)

Query: 41  FIDL---LFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDG 97
             DL   L+Y P  + DR     I      + V +   + +      +K   Y +   DG
Sbjct: 114 INDLYSALWYLPVRYEDRRLNNSIKTTKPGQKVALKLRVLETGYDPSEKYPAY-VKCEDG 172

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
           TG + L F Y+  + L   F +G  I   G++K+ K    MVHP   F   +   F  I 
Sbjct: 173 TGILYLRFRYKDQKPLY-AFKKGSYIVAYGRLKEFKGEKYMVHPEVSFQEEE---FGKIL 228

Query: 158 AVY---------SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
             Y         ++ +       ++ I + L  +  +PE++ ++LLQK  FP+IAE+  +
Sbjct: 229 PFYYIRSKGEIKAISSKTRHRKIRQAIGKLLEYVKYMPEYLPEELLQKYQFPNIAESLYM 288

Query: 209 IHNPRKAKDFEWTS---PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI 265
            H+P+   +    S   P + RL Y+EL   Q+ L + ++Q      + ++   K  +++
Sbjct: 289 AHSPQDGDEDALNSRATPFQRRLIYEELFLFQLLLQIRKRQISNLEAVKLSHPEKHTEEL 348

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           +  +PF  T++Q   +++I +D+     M R+LQGDVGSGKT+VA+    A    G Q  
Sbjct: 349 ISTLPFKLTEAQRRVLEEIAKDLKTGKPMNRLLQGDVGSGKTVVAMAVSYAFAREGYQCA 408

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           IMAP  ILAQQHYE  K++ +   + V ++T ++  + R      I+ G   ++IGTHAL
Sbjct: 409 IMAPTEILAQQHYENFKRFLEPLGVKVGLLTSSVKGSARNSVYRHISAGNISVLIGTHAL 468

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--APHVLLMTATPIPRTLVLTSLGDI 443
            QD +++  L  V++DEQHRFGV QR ++  K     PH L+M+ATPIPRTL L+  GD+
Sbjct: 469 LQDRLEFENLAFVVIDEQHRFGVMQRREMLSKGKNLFPHCLVMSATPIPRTLALSLYGDL 528

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           DIS I + P GRKP+ T +I  +++++ I  ++  L +G K Y + P IE  ++   +S 
Sbjct: 529 DISIIDQMPEGRKPVITKLIFESQMEKCISFIRSELEKGGKVYVVYPLIEGSEKVELKSA 588

Query: 504 VERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            E +      F    + ++HGR+ D +KE+VM  FK  +  +L++TTVIEVG+DV  A++
Sbjct: 589 TESYMLWKSLFPDRKVLLMHGRLKDQEKEAVMREFKE-SADILVSTTVIEVGVDVPSATV 647

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL---SKNSYTRLSVLKNTEDGFL 619
           ++IE+A  FGL+Q+HQLRGRVGR E    C L+    L      +  RL VL  T DGF 
Sbjct: 648 MVIESAHMFGLSQIHQLRGRVGRSERQGYCFLVVPDSLKNTDAEAIKRLRVLVQTSDGFK 707

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS--LLEIARKDAKHILTQDPDLTSVR 677
           IAEEDLK R  GE+LG  QSG   F +A     +   LLE+A++DAK ++ +   + +++
Sbjct: 708 IAEEDLKMRGPGELLGASQSGYFGFTVASLARAEDRYLLELAKEDAKAMIEKLNHMENLK 767

Query: 678 GQSIRILLYLYQ 689
               ++L Y Y+
Sbjct: 768 ----KVLAYRYK 775


>gi|216263710|ref|ZP_03435705.1| ATP-dependent DNA helicase RecG [Borrelia afzelii ACA-1]
 gi|215980554|gb|EEC21375.1| ATP-dependent DNA helicase RecG [Borrelia afzelii ACA-1]
          Length = 686

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 215/668 (32%), Positives = 338/668 (50%), Gaps = 26/668 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR---PKI 61
           FL+     L    G+G+K    L  +            DL+ + P  + DR      P  
Sbjct: 2   FLHEFEYELKGIDGLGEKGVERLKNLQ------ILNVKDLIEFFPVKYEDRQNIQTFPDF 55

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFF 118
           S++    ++T+   +  H  F    ++  K+    +ND   EI L         L+NVF 
Sbjct: 56  SKVKSCDMMTVF-TVVGHKKFGDSSKKNLKLTAKSVNDEPFEILL----FNRAFLENVFK 110

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
             +K  +  K        +    ++     +     F  I  VYSL  GL+       + 
Sbjct: 111 IDKKFYIYSKFTYNDYSGLWSCSNFDSEVFSDNPERFKKILPVYSLTEGLTSKKISLYVR 170

Query: 177 EALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           EAL       +  I K L++K S  S++EA   IH P   +  E    A++ L Y E+  
Sbjct: 171 EALEYFFKFGQTDIPKFLIEKYSLLSLSEALKEIHFPSSLEMLE---KAKKTLIYREIFL 227

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q       +  K       ++   + ++++ ++PF  T+ Q  +I +I  D++    M 
Sbjct: 228 LQFFS--RYRSSKVLFREKKHLSRDLLERVISSLPFELTEGQRISIDEIFSDLNSSKPMN 285

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++    +EAG Q   MAP  +LA+QHY+ +        I V ++
Sbjct: 286 RLLQGDVGSGKTLVALLSGIPLIEAGYQVAFMAPTDLLARQHYDNLSNILSPFNISVTLL 345

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++ +  + +ALE I  G + +I+GTHA+F +S ++ +L  VI+DEQH+FGV QR +L 
Sbjct: 346 TGSLKKRDKEQALESIKSGASGLIVGTHAIFYESTEFKRLAYVIIDEQHKFGVVQREELK 405

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K     +LLM+ATPIPR+  LT  GD++IS I   P GR PI T +       +V E L
Sbjct: 406 NKGEGVDMLLMSATPIPRSFALTLFGDLEISFIKTLPKGRLPITTYLAKHGNEGKVYEFL 465

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVM 534
           +  L++G + Y++ P I   ++   + V      L E F   +  ++H ++    KE +M
Sbjct: 466 RKELAKGHQVYFVYPLISSSEKFELKDVNNMCLKLKEVFGEYVVDMLHSKLPSDLKEEIM 525

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F +    +L+AT+VIEVGID  +A+ +++E+AE FGL+ LHQ+RGRVGR    S   L
Sbjct: 526 KNFYSKKVDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRVGRSNLQSFFFL 585

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL+     RL  +K   DGF IAEEDL+ R  G + G++Q+G  K  IA       
Sbjct: 586 LYKEPLTSAGKFRLKTIKENLDGFKIAEEDLRLRGPGNLFGLEQAGYLKLKIANFVDDRD 645

Query: 655 LLEIARKD 662
           ++ + R++
Sbjct: 646 VIVLIREE 653


>gi|111115409|ref|YP_710027.1| ATP-dependent DNA helicase RecG [Borrelia afzelii PKo]
 gi|110890683|gb|ABH01851.1| DNA recombinase [Borrelia afzelii PKo]
          Length = 686

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 214/668 (32%), Positives = 339/668 (50%), Gaps = 26/668 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR---PKI 61
           FL+     L    G+G+K    L  +            DL+ + P  + DR      P  
Sbjct: 2   FLHEFEYELKGIDGLGEKGVERLKNLQ------ILNVKDLIEFFPVKYEDRQNIQTFPDF 55

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFF 118
           S++    ++T+   +  H  F    ++  K+    +ND   EI L         L+NVF 
Sbjct: 56  SKVKSCDMMTVF-TVVGHKKFGDSSKKNLKLTAKSVNDEPFEILL----FNRAFLENVFK 110

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
             +K  +  K        +    ++     +     F  I  VYSL  GL+       + 
Sbjct: 111 IDKKFYIYSKFTYNDYSGLWSCSNFDSEVFSDNPERFKKILPVYSLTEGLTSKKISLYVR 170

Query: 177 EALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           EAL       +  I K L++K S  S++EA   IH P   +  E    A++ L Y E+  
Sbjct: 171 EALEYFFKFGQTDIPKFLIEKYSLLSLSEALKEIHFPSSLEMLE---KAKKTLIYREIFL 227

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q       +  K       ++   + ++++ ++PF  T+ Q  +I +I  D++    M 
Sbjct: 228 LQFFS--RYRSSKVLFREKKHLSRDLLERVISSLPFELTEGQRISIDEIFSDLNSSKPMN 285

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++    +EAG Q   MAP  +LA+QHY+ +     +  I V ++
Sbjct: 286 RLLQGDVGSGKTLVALLSGIPLIEAGYQVAFMAPTDLLARQHYDNLSNILSSFNISVTLL 345

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++ +  + ++LE I  G + +I+GTHA+F +S ++ +L  VI+DEQH+FGV QR +L 
Sbjct: 346 TGSLKKRDKEQSLESIKSGASGLIVGTHAIFYESTEFKRLAYVIIDEQHKFGVVQREELK 405

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K     +LLM+ATPIPR+  LT  GD++IS I   P GR PI T +       +V E L
Sbjct: 406 NKGEGVDMLLMSATPIPRSFALTLFGDLEISFIKTLPKGRLPITTYLAKHGNEGKVYEFL 465

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVM 534
           +  L++G + Y++ P I   ++   + V      L E F   +  ++H ++    KE +M
Sbjct: 466 RKELAKGHQVYFVYPLISSSEKFELKDVNNMCLKLKEVFGEYVVDMLHSKLPSDLKEEIM 525

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F +    +L+AT+VIEVGID  +A+ +++E+AE FGL+ LHQ+RGRVGR    S   L
Sbjct: 526 KNFYSKKVDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRVGRSNLQSFFFL 585

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL+     RL  +K   DGF IAEEDL+ R  G + G++Q+G  K  IA       
Sbjct: 586 LYKEPLTSAGKFRLKTIKENLDGFKIAEEDLRLRGPGNLFGLEQAGYLKLKIANFVDDRD 645

Query: 655 LLEIARKD 662
           ++ + R++
Sbjct: 646 VIVLIREE 653


>gi|170781173|ref|YP_001709505.1| putative ATP-dependent DNA helicase RecG [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155741|emb|CAQ00862.1| putative ATP-dependent DNA helicase RecG [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 727

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 223/729 (30%), Positives = 358/729 (49%), Gaps = 61/729 (8%)

Query: 15  TFRGV-GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73
              GV G + +  L K             DLL + P  +  R     ++E+  ++  TI 
Sbjct: 7   ALAGVVGGRTAGVLQK-----AFGLRTVADLLEHLPRRYARRGELTALAELPVDQQATIV 61

Query: 74  GYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
             + +     ++ RR    ++ + DG G +TL FF +           G +    GK+  
Sbjct: 62  AEVREVRERPMRARRGSILEVRITDGRGFLTLTFFNQ--AWRAKDLVPGVRGIFAGKVSD 119

Query: 132 LKNRIIMVHPHYIFHNSQD----------------VNFPLIEAVYSLPTGLSVDLFKKII 175
            +  + + HP Y   ++ +                   P+   +Y     ++     K +
Sbjct: 120 YRGALQLAHPDYELFDAHEGPELSGGEPDAAARRWAEMPI--PIYPASASMASWQVAKSV 177

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
             AL  +  L + +  D+  ++      EA   +H P K  D+      R+ L + E   
Sbjct: 178 ELALDAVDDLEDPVPADVRAERGLLPYREALEGVHRPEKDVDW---KRGRDALRFQEAFV 234

Query: 236 GQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
            Q ALL  R+  +     P I   G    ++   +PF  T  Q    ++I  DM++   M
Sbjct: 235 LQTALLQRRQAARALPATPRIPTPGGHLDRLDAQLPFELTGDQRLVGEEIATDMARTWPM 294

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT---QII 351
            R++QG+VGSGKTLVAL AM A  ++GGQ+ ++AP  +LA QH   +          +++
Sbjct: 295 NRLVQGEVGSGKTLVALRAMLAVADSGGQSALLAPTEVLASQHLRSLTASLGPDLAAELM 354

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
             ++TG +  A R++AL RI  GQA I++GTHAL  D + +  L LV+VDEQHRFGV QR
Sbjct: 355 PTLLTGQLSTAERKRALLRIVSGQARIVVGTHALLGDRVGFLDLGLVVVDEQHRFGVDQR 414

Query: 412 LKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--- 467
             L  +  T PHVL++TATPIPRT+ +T  GD+D+S I E P+GR+PI++ ++P++    
Sbjct: 415 EALRRKGGTPPHVLVLTATPIPRTVAMTVFGDLDVSTIAELPSGRQPIESFVVPLHEHPG 474

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEK-------------KESNFRSVVERFNSLHEH 513
            I+ V ER    + +G++A+ +CP I+ +             +++  R  +     +   
Sbjct: 475 WIERVWERTAEEIQKGRQAFVVCPAIDPQDPDAEDEDAGEGAEDAPTRPSLATVTEVDAL 534

Query: 514 FTS-------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             +         A++HGRM+  +K+ VM +F  G   L++ATTVIEVG+DV +AS ++I 
Sbjct: 535 LGAHPRLGSVRRAVLHGRMTGEEKDRVMRAFSAGDIDLIVATTVIEVGVDVPNASTMVIL 594

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           +A+ FG++QLHQLRGRVGRG     C+++ H      +  R+  +  T DGF +A  DL+
Sbjct: 595 DADRFGVSQLHQLRGRVGRGGVPGLCLMVTHAEPETVARERVDAVAATLDGFELARVDLE 654

Query: 627 QRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            R+EG +LG  QSG      + +      L+E AR+ A  +L   PDL         +  
Sbjct: 655 LRREGNVLGTNQSGGRSSLRLLRVAQDGDLIESAREHAHDVLEASPDLADQPALGRALAR 714

Query: 686 YLYQYNEAF 694
            L     AF
Sbjct: 715 RLDDEERAF 723


>gi|224542838|ref|ZP_03683377.1| hypothetical protein CATMIT_02030 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524250|gb|EEF93355.1| hypothetical protein CATMIT_02030 [Catenibacterium mitsuokai DSM
           15897]
          Length = 676

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 204/646 (31%), Positives = 338/646 (52%), Gaps = 19/646 (2%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
           ++I     ++     DL++++P  + +            E    + G I        + R
Sbjct: 22  NRIDLLHASSIDTLEDLIYHYPYKYDEVSEIWP----PVEDKCCVEGVIISSPKVFYKGR 77

Query: 88  -RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFH 146
                   +    + T+  F R    L+      R +T+ GK++  +    +   + +  
Sbjct: 78  FSRMTFNASIKGNDYTVTIFNR--HFLRPHLTLNRIVTLQGKVEGNR----LTASNILLK 131

Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
           N   ++   I  VYSL  GL+   F + + + L     + + +  ++ +     S  EA 
Sbjct: 132 NLDQLS--GITPVYSLKDGLTSHAFSQYVKKVLGMNIPIEDGLPIEIRETVDLMSKKEAL 189

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
             +H P      E      + L Y+E L  ++AL   R Q ++E+G   +         +
Sbjct: 190 YAVHFPMN---HEQLQKGIKTLKYEEFLNFELALSYRRMQREQEVGYAKDFSLDEVNAFI 246

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             +PF  TK Q+ + K+IL D+     M R LQGDVGSGKT+VA I + A   +G Q  +
Sbjct: 247 HTLPFKLTKDQKQSAKEILLDLHNPTIMYRFLQGDVGSGKTIVAAIGLYANYLSGYQGAL 306

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  +LA QHY  +KK  +   + + ++TG++    +++  E +  G   ++IGTHALF
Sbjct: 307 MAPTEVLATQHYSKLKKTFEAYNMNIALLTGSLTLKEKKEIYEGLKSGVIDLVIGTHALF 366

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
           Q+S+ Y  L  V+ DEQHRFGV+QR  L QK      L+M+ATPIPRTL ++  GD+D+S
Sbjct: 367 QESVHYKNLGFVVTDEQHRFGVKQRKALKQKGEGVDFLVMSATPIPRTLAMSLYGDMDVS 426

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I  +P GRKPI T     + +   +++LK  LS+  + Y ICP IE+ ++   +S +  
Sbjct: 427 SIETRPEGRKPILTKYFEGSSMKPFLKQLKSYLSQDGQCYVICPLIEDNEDLPLKSALTI 486

Query: 507 FNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           + ++  +F       ++HG + D +K +VM  FK+   ++L++TTV+EVG+DV +A++++
Sbjct: 487 YEAMSSYFKGHYQTGLLHGSLKDEEKNAVMQDFKDNKIQILVSTTVVEVGVDVPNANMMV 546

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I NAE FGL+ +HQLRGR+GRG++   C LL      + +  RL  L+  +DGF I++ D
Sbjct: 547 IYNAERFGLSSIHQLRGRIGRGDQQGYCFLL-SEAQDEPAKERLHYLEEHDDGFEISQYD 605

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           LK R  GE+LG KQSG+P F++       ++LE  R+ A  ++   
Sbjct: 606 LKTRGPGELLGDKQSGLPAFMMGDIFKDMNILEETRRYAIKMIHDY 651


>gi|148272534|ref|YP_001222095.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830464|emb|CAN01399.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 727

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 223/729 (30%), Positives = 356/729 (48%), Gaps = 61/729 (8%)

Query: 15  TFRGV-GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT 73
              GV G + +  L K             DLL + P  +  R     ++E+  ++  TI 
Sbjct: 7   ALAGVVGGRTAGVLQK-----AFGLRTVADLLEHLPRRYARRGELTALAELPVDQQATIV 61

Query: 74  GYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
             + +     ++ RR    ++ + DG G +TL FF +           G +    GK+  
Sbjct: 62  AEVREVRERPMRARRGSILEVRITDGRGFLTLTFFNQ--AWRAKDLVPGVRGIFAGKVSD 119

Query: 132 LKNRIIMVHPHYIFHNSQD----------------VNFPLIEAVYSLPTGLSVDLFKKII 175
            +  + + HP Y   ++ +                   P+   +Y     ++     K +
Sbjct: 120 YRGALQLAHPDYELFDAHEGPELSGGEPDAAARRWAEMPI--PIYPATASMASWQVAKSV 177

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
             AL  +  L + +  D+  ++      EA   +H P K  D+      R+ L + E   
Sbjct: 178 ELALDAVDDLEDPVPADVRAERGLLPYREALEGVHRPEKDVDW---KRGRDALRFQEAFV 234

Query: 236 GQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
            Q ALL  R+  +     P I   G    ++   +PF  T  Q    ++I  DM++   M
Sbjct: 235 LQTALLQRRQAARALPATPRIPTAGGHLDRLDAQLPFELTGDQRLVGEEIATDMARTWPM 294

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT---QII 351
            R++QG+VGSGKTLVAL AM A  + GGQ+ ++AP  +LA QH   +          +++
Sbjct: 295 NRLVQGEVGSGKTLVALRAMLAVADTGGQSALLAPTEVLASQHLRSLTASLGPDLAAELM 354

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
             ++TG +  A R++AL RI  GQA I++GTHAL  D +++  L LV+VDEQHRFGV QR
Sbjct: 355 PTLLTGQLSTAERKRALLRIVSGQARIVVGTHALLGDRVEFLDLGLVVVDEQHRFGVDQR 414

Query: 412 LKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--- 467
             L  +  T PHVL++TATPIPRT+ +T  GD+D+S I E P+GR+P+++ ++P++    
Sbjct: 415 EALRRKGGTPPHVLVLTATPIPRTVAMTVFGDLDVSTIAELPSGRQPMESFVVPLHEQPR 474

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--------------------RSVVER 506
            I+ V ER    + +G++A+ +CP I+ +                           V   
Sbjct: 475 WIERVWERTAEEIQKGRQAFVVCPAIDPQDPDAEDEDAAEGADDAATRPALATVTEVDAL 534

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             +     +   A++HGRMS  +K+ VM +F  G   L++ATTVIEVG+DV +AS ++I 
Sbjct: 535 LAAHPRLGSVRRAVLHGRMSGEEKDRVMRAFSAGDIDLIVATTVIEVGVDVPNASTMVIL 594

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           +A+ FG++QLHQLRGRVGRG     C+++ H      +  R+  +  T DGF +A  DL+
Sbjct: 595 DADRFGVSQLHQLRGRVGRGGVPGLCLMVTHAEPETVARERVDAVAATLDGFELARVDLE 654

Query: 627 QRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            R+EG++LG  QSG      + +      L+E AR+ A  +L   PDL      +  +  
Sbjct: 655 LRREGDVLGTNQSGGRSSLRLLRVAQDGDLIESAREHAHDVLEASPDLQGHPALARALAR 714

Query: 686 YLYQYNEAF 694
            L     AF
Sbjct: 715 RLDDEERAF 723


>gi|187918444|ref|YP_001884007.1| ATP-dependent DNA helicase RecG [Borrelia hermsii DAH]
 gi|119861292|gb|AAX17087.1| ATP-dependent DNA helicase RecG [Borrelia hermsii DAH]
          Length = 687

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 218/666 (32%), Positives = 336/666 (50%), Gaps = 22/666 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI--- 61
           FL+     L    G+GKK    L+ +      + T   +L+ Y P  + DR         
Sbjct: 2   FLHEFKYDLQGISGLGKKGLERLNSL------HITNIRELIEYFPKKYEDRKNIKTFPDS 55

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFEG 120
            E+    ++T+   + +H  F    +R  K++      EI  +L F R    L+ VF  G
Sbjct: 56  LEVRNCELMTVF-TVLEHRDFGNNFKRNLKLIAQSENNEIFEILLFNRG--FLEGVFKVG 112

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +K  +  K        +    ++     +     F  I  VYSL  GL+       + EA
Sbjct: 113 QKFYIYSKFNYNDYTQMWSCSNFDSEVFSCNPERFKKIIPVYSLSEGLTSKKISSYVKEA 172

Query: 179 LSRLPVL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L          + + L+ K S     EA N IH P     FE    A++ L Y E+   Q
Sbjct: 173 LVYFLKFGQSDVPEFLINKYSLLPFHEALNEIHFPSS---FEMLEKAKKTLIYREIFLLQ 229

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
                  K     +    N+   +  +I+  +PF  TK Q  AI +I+ D+     M R+
Sbjct: 230 FFS--RGKSSVFFLRKERNLPRNLLDQIILKLPFKLTKDQRVAIDEIINDLESNKPMNRL 287

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VA ++    +EAG Q  +M P  +LA+QHY  +    ++  + +  +TG
Sbjct: 288 LQGDVGSGKTIVAFLSSIPLIEAGYQVALMVPTDLLARQHYNNLANILKDFNVSIAFLTG 347

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++ +  R + LE+I  G   ++IGTHA+F    ++ +L  +I+DEQH+FGV+QR +L  K
Sbjct: 348 SLKKRDRDEVLEKIQSGTYSLVIGTHAIFSQGTKFKRLAYIIIDEQHKFGVEQREELKNK 407

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                VLL++ATPIPR+L LT  GD++IS I   PAGR P+ T +      ++V E LK 
Sbjct: 408 GEEVDVLLISATPIPRSLALTLFGDLEISLIRRGPAGRIPVTTYLAKHGNEEKVYEFLKN 467

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L++G + Y++ P I   +  N +       +L   F   S+ +IH ++    KE +M  
Sbjct: 468 ELAKGHQVYFVYPLISSSQRFNLKDATSMCLNLKNIFVEYSVEMIHSKLESHVKEEIMHD 527

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F      +L+AT+VIEVGID  +A+ +++E+AE FGL+ LHQ+RGRVGRG   S   LLY
Sbjct: 528 FYLKRIDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRVGRGSLKSFLFLLY 587

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PL+++   RL  +K   DGF IAEEDLK R  G + G++Q+G  K  IA       ++
Sbjct: 588 KEPLTESGKFRLKTIKENIDGFKIAEEDLKLRGPGNLFGLEQTGYLKLKIADFIEDREVV 647

Query: 657 EIARKD 662
            + R++
Sbjct: 648 RLIREE 653


>gi|256832897|ref|YP_003161624.1| DEAD/DEAH box helicase domain-containing protein [Jonesia
           denitrificans DSM 20603]
 gi|256686428|gb|ACV09321.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
           20603]
          Length = 750

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 236/743 (31%), Positives = 361/743 (48%), Gaps = 68/743 (9%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+    +G K +  L+K+        T   DLL++ P  + +      I  ++E  
Sbjct: 18  LSRPLTKL--LGTKTATALTKL------GLTTAQDLLWHTPRRYAEPGRLTNIGALTEGE 69

Query: 69  IVTITGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLK---NVFFEGRKI 123
            VT+   I   S+  ++ R       L+ D T  +TL FF R    L+   +    GR  
Sbjct: 70  HVTVMARIHSTSTRTMRSRSGALLTALVTDDTHTLTLAFFARSAGALRVHESKLQPGRVA 129

Query: 124 TVTGKIKKLKNRIIMVHPHYIF--------HNSQDVNFPLIEAVYSLPTGLSVDLFKKII 175
             TG ++  +    + HP YI          ++ DV    I  +Y    G+     ++ +
Sbjct: 130 LFTGTVRDYRGERQLTHPDYIIIGIDATTTDDAIDVANRPI-PIYPATAGVPTWRIERAV 188

Query: 176 VEALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
              L +L    +P+ +   + ++   P+  EA  +IH P    D+      R R+  DE 
Sbjct: 189 ATVLGQLTPTDVPDPLPATIRERDQLPTAYEALRMIHQPHTDSDWRRA---RHRMRIDEA 245

Query: 234 LAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
              Q AL+  R   +        ++ G++A      +P++ T+ Q     DI  D++  +
Sbjct: 246 FVIQTALIQRRHTTRTLPATARPHIAGQLADTFDATLPYTLTQGQRDVGADIATDLASTH 305

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT------- 345
            M R+LQGDVGSGKTLVAL AM   ++  GQAV++AP  +LA QH   + +         
Sbjct: 306 PMQRLLQGDVGSGKTLVALRAMLQVIDNHGQAVLLAPTEVLATQHAATLTQLLGPLANGP 365

Query: 346 --QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
             +     + ++TG++    R++AL  IA G A IIIGTHA+  D++ Y  L LVIVDEQ
Sbjct: 366 LTKGPATTITLLTGSLTTTQRKRALLDIASGMAGIIIGTHAVLSDNVHYADLGLVIVDEQ 425

Query: 404 HRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           HRFGV QR  L  + T  PH+L+MTATPIPRT+ +T  GD+DIS +T+ PAGR  I T  
Sbjct: 426 HRFGVHQRDTLRTRGTHTPHMLVMTATPIPRTVAMTVFGDLDISTLTDMPAGRAGITTHR 485

Query: 463 IPIN---RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV--------------- 504
           +P      +  V +R    + +G++ Y +CP+I + +                       
Sbjct: 486 VPAKNPTWMSRVWQRAAEEIHQGRQVYVVCPRINDTEPDPTTEPDLTDPDTLPLDNTPTP 545

Query: 505 ----------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                         +        I ++HG MS  DK++ M +F + T  LL+ATTVIEVG
Sbjct: 546 RTLASVTTTATMLANEPALAGVRIGVLHGGMSGDDKDAAMVNFADHTTPLLVATTVIEVG 605

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           ++V  AS +II +A+ FG++QLHQLRGRVGRG E   C+L+        +  RL+ + +T
Sbjct: 606 VNVPTASTMIILDADRFGISQLHQLRGRVGRGTEPGLCLLVADTQPGTPADDRLNAVAST 665

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            DGF +A  DL+ R+EG++LG  QSG        +      L+  AR+DA  I+T DP L
Sbjct: 666 TDGFDLAARDLELRREGDVLGATQSGRGSSLKFLRVITDADLIATAREDAITIVTADPTL 725

Query: 674 TSVRGQSIRILLY-LYQYNEAFQ 695
           T     +  +  Y     +E   
Sbjct: 726 TDHPELAAAVRAYSDAGRDEYLD 748


>gi|108804209|ref|YP_644146.1| ATP-dependent DNA helicase RecG [Rubrobacter xylanophilus DSM 9941]
 gi|108765452|gb|ABG04334.1| ATP-dependent DNA helicase RecG [Rubrobacter xylanophilus DSM 9941]
          Length = 710

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 234/682 (34%), Positives = 362/682 (53%), Gaps = 24/682 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P+    GVG +    L ++        +   DL+ ++PS   D     +ISE+      T
Sbjct: 25  PVGELPGVGPRIERALREL------GISSVADLITHYPSRHEDLSNVRRISELRVGERAT 78

Query: 72  ITGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           +   ++         R     +   L DGTG I  + + R    L+     G ++ V+G+
Sbjct: 79  VLARVTGTRPVGRPVRGRPPGFSAQLYDGTGYIPAVVWGR--HWLQGQLVPGTRVVVSGE 136

Query: 129 IKKLKNRIIMVHPHYIFHNSQDV----NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           +++ +  I +        + +D     +      VY     +     + +I  AL+ +  
Sbjct: 137 VQR-RYGIQLAARSIELVDGEDGQGGPHAGRFVPVYPSNRHIQPRRLRTLIHRALAGVGR 195

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + + +  DLL ++  P++ +A + +H P    D    + A  RL + EL   Q AL   +
Sbjct: 196 ILDPLPADLLARRDLPALHDAIHEVHFPH---DRRSLAAALRRLVFQELFVIQAALAARK 252

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
               +         +G +    L+ +PF  T +Q+  + +IL DM  +  M R+LQGDVG
Sbjct: 253 AHAARHERGRSHAGDGSLLNPYLQGLPFGFTGAQQRVLGEILADMRSERPMRRLLQGDVG 312

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT VA+ A+  AVEAGGQ  +MAP  +LA+QHY  I    +   + V ++TG+   A 
Sbjct: 313 SGKTAVAVAALLTAVEAGGQGALMAPTEVLAEQHYLSISGALRKLPVRVVLLTGSQGAAR 372

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR+ALE +  G+AHI +GTHAL Q  + +  L LV+VDEQHRFGV QR  + +K   P  
Sbjct: 373 RREALEALRSGEAHIAVGTHALIQKGVGFRDLSLVVVDEQHRFGVGQRTTIREKGRTPDT 432

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL LT  GD+++S I E P GRKP++T ++P+ R  E    ++  L  G+
Sbjct: 433 LIMTATPIPRTLSLTLYGDLEVSVIDELPPGRKPVETRLVPLGRRHEAYGEVRRELERGR 492

Query: 484 KAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNG 540
           +AY ICP +EE +     R+  E +  L         + ++HGRM   +K  VM +F+ G
Sbjct: 493 QAYVICPLVEESEALEEVRAAEELYEELRRDIFPERRVGLLHGRMRAQEKREVMSAFRAG 552

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+AT V+EVG+DV +AS+I+IE AE FGL+QLHQLRGRV RG     C L+  P  
Sbjct: 553 RVEVLVATVVVEVGVDVPNASVIVIEGAERFGLSQLHQLRGRVCRGTHPPRCFLVADPA- 611

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++ +  RL  L   +DGF ++E DL  R EG + G +QSGMP   +A+      +L  AR
Sbjct: 612 TEEAGRRLEALVEHQDGFRLSEVDLAIRGEGTLFGSRQSGMPDLKVAKLLRDVEVLVEAR 671

Query: 661 KDAKHILTQDPDLTSVRGQSIR 682
           ++A  ++ +DP L S   + +R
Sbjct: 672 REAFDLVARDPALRSPLHRPLR 693


>gi|251772283|gb|EES52853.1| putative ATP-dependent DNA helicase (RecG) [Leptospirillum
           ferrodiazotrophum]
          Length = 711

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 212/678 (31%), Positives = 352/678 (51%), Gaps = 28/678 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L APLS+F  +G +    L +         +  +DLL+  P  + DR  R  +SE++E  
Sbjct: 11  LTAPLSSFPSIGPRRQARLER------RGLSTVLDLLYCFPYRYEDRRIRLVVSELTEGA 64

Query: 69  IVTITGYISQHSS--FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
                  +           K    +  + D +GEI +++F    E L     EG +    
Sbjct: 65  EQGFVATVRSIRKKIVPKIKAPIIEATVYDRSGEIPVVWF--GQEYLLKHLPEGSQAFFF 122

Query: 127 GKIKK--LKNRIIMVHPHYIFHNSQDV-----NFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           GK++       +++  P     + +       +   I  VY    GLS  +F++I+ + L
Sbjct: 123 GKVEYSSYSRGLVLRSPVVEPIDPEQGLRRSYHIGRIVPVYREEAGLSTGVFRRIVGDVL 182

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK-----AKDFEWTSPARERLAYDEL 233
            +      + + + + ++        A   +H PR+      +      P R+R+ ++E 
Sbjct: 183 RALWGEAFDPLPESVCREAHLMGWFPAIVEMHFPRETERPMEELLLPGYPPRDRIVFEEF 242

Query: 234 LAGQIALLLMRKQFKK--EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
              +  ++L R+       + +P            R  PF  T +Q+ A ++I +D +Q 
Sbjct: 243 FLLEYLMMLRRQGVHHSGRMWVPAEEGHDPVAAFERQAPFPLTGAQQRACREIARDFAQP 302

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
           + M R L GDVGSGKTLVA  AM  A+ AG Q   +AP  ILAQQH   +    +     
Sbjct: 303 HPMNRFLLGDVGSGKTLVAAFAMLQALRAGCQTAFLAPTEILAQQHCRTLAALLKEEP-- 360

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
             +++ ++    RR+ L  IA G+  +I+GTHA+ ++ + + KL LV++DEQH+FGV QR
Sbjct: 361 PVLLSQSVKGLDRRRLLSGIAEGRHRVIVGTHAIIEEGVVFEKLGLVVIDEQHKFGVAQR 420

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             L  K   P +L+MTATPIPR+L L+  GD++IS + E P GR+P++T I+P       
Sbjct: 421 KALWSKGPNPDILVMTATPIPRSLALSYYGDLEISLLDELPPGRQPVETRIVPKADESFW 480

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDK 530
            +++  VL+  ++ + + P +EE ++ + ++  +    L   F    + ++ GRM+  +K
Sbjct: 481 KKKVAPVLARSEQVFVVLPLVEESEKVDAKNAQDVHGYLSSIFPHVRVGLLTGRMAGEEK 540

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           ESVM++F+ G   +L+ATTVIEVG+D+  AS++++ENAE FGLAQLHQLRGR+GRG    
Sbjct: 541 ESVMEAFRTGEISILVATTVIEVGVDIPRASVMVVENAERFGLAQLHQLRGRIGRGGLPG 600

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
           +  L+    +  +   RL +L+   DGF +AEEDL+ R  GE +G++QSG+P F++A   
Sbjct: 601 TFYLVPGEGMGDDGRRRLRILEEYSDGFHVAEEDLRMRGPGEFMGVRQSGLPMFVVADLV 660

Query: 651 LHDSLLEIARKDAKHILT 668
               +L  AR+ A   + 
Sbjct: 661 RDAEVLFRARQLAASYVE 678


>gi|328676417|gb|AEB27287.1| ATP-dependent DNA helicase RecG [Francisella cf. novicida Fx1]
          Length = 679

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 224/665 (33%), Positives = 364/665 (54%), Gaps = 20/665 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           GVG+     L+K       N     DLL   P  + D      I+ +   +   I G ++
Sbjct: 8   GVGEATIKALAK------YNIHAPNDLLTIFPKVYKDTRVITPINHLVAGKRSLIQGRVT 61

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
            + +++   ++  +  +ND TG  +++ F      L  +  +   +   GK++       
Sbjct: 62  -NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILEKSEYVRCYGKVE-FSLSPQ 118

Query: 138 MVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK 196
           MVHP +   +N +        AVY L   +   L  K+I++ L    V    I   LL++
Sbjct: 119 MVHPEWATVNNGECTLKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLLRR 176

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
            +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K   K     + 
Sbjct: 177 FNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQAPQLF 236

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +      +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA  A
Sbjct: 237 LTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIAAYA 296

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R++L++I   + 
Sbjct: 297 AVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKIKDQKD 356

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT------APHVLLMTATP 430
            +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K++       PH L+++ATP
Sbjct: 357 CVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIISATP 416

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +  G++ YW+CP
Sbjct: 417 IPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYWVCP 476

Query: 491 QIEEKKESNFRSVVER-FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +EE +  +F   V+  +  L E     ++ +++G M   DK   M +FK     +L+AT
Sbjct: 477 LVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVLVAT 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+    RL
Sbjct: 537 TVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGKRRL 596

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           S+++ ++DGF +AE+DL+ R  G+ILG +QSG+  F       +    +   + A  +  
Sbjct: 597 SLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTFKTFDINEYYDNYDKVVEFADMLDK 656

Query: 669 QDPDL 673
             P+L
Sbjct: 657 DYPEL 661


>gi|223888856|ref|ZP_03623447.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 64b]
 gi|223885672|gb|EEF56771.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 64b]
          Length = 686

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 212/666 (31%), Positives = 343/666 (51%), Gaps = 22/666 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR---PKI 61
           FL+     L    G+G+K    L+ +            DL+ + P  + DR      P  
Sbjct: 2   FLHEFEYELKGIGGLGEKGVERLNNLQ------IFNVKDLIEFFPVKYEDRQNIQTFPDF 55

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEG 120
           S++    ++T+   +  H  F    ++  K+ +     E   +L F R    L+NVF   
Sbjct: 56  SKVKSCDMMTVF-TVLGHKKFGDSSKKNLKLTVKSINEEPFEILLFNR--AFLENVFKID 112

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +K  +  K        +    ++    ++ +   F  I  VYSL  GL+       + EA
Sbjct: 113 KKFYIYSKFTYNDYSGLWSCSNFDSEVYSDKPERFKKILPVYSLTEGLTSKKISLYVKEA 172

Query: 179 LSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L       +  I + L++K S  S+++A   IH P   +  E    A++ L Y E+   Q
Sbjct: 173 LEYFFKFGQTDIPRFLIEKYSLLSLSDALKEIHFPSSLEMLE---KAKKTLIYREIFLLQ 229

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
                  +  K       ++   + +K++ ++PF  T+ Q+ +I +I  D++    M R+
Sbjct: 230 FFS--RYRSSKILFREKKDLSKDLLEKVVSSLPFELTEDQKISINEIFFDLNSSKPMNRL 287

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL++    +EAG Q   MAP  +LA+QHY+ +        I + ++TG
Sbjct: 288 LQGDVGSGKTLVALLSGLPLIEAGYQVAFMAPTDLLARQHYDNLSNILAPFNISMTLLTG 347

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++ +  + +ALE I +G + +I+GTHA+F +S ++ +L  VI+DEQH+FGV QR +L  K
Sbjct: 348 SLRKKDKEQALESIRNGTSGLIVGTHAIFYESTEFKRLAYVIIDEQHKFGVVQREELKNK 407

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                +LLM+ATPIPR+  LT  GD+++S I   P GR PI T +      D+V E L+ 
Sbjct: 408 GEGVDMLLMSATPIPRSFALTLFGDLEVSFIKTLPKGRLPITTYLARHGNEDKVYEFLRK 467

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDS 536
            L +G + Y++ P I   ++   + V      L E F   +  ++H ++    KE +M +
Sbjct: 468 ELLKGHQVYFVYPLISSSEKFELKDVNNMCLKLKEVFGEYVVDMLHSKLPSDLKEEIMKN 527

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+AT+VIEVGID  +A+ +++E+AE FGL+ LHQ+RGRVGR    S   LLY
Sbjct: 528 FYSKKVDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRVGRSNLQSFFFLLY 587

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PL+     RL  +K   DGF IAEEDL+ R  G + G++Q+G  K  IA       ++
Sbjct: 588 KEPLTSAGKFRLKTIKENLDGFKIAEEDLRLRGPGNLFGLEQAGYLKLKIANFVDDREII 647

Query: 657 EIARKD 662
            + R++
Sbjct: 648 VLVREE 653


>gi|225621185|ref|YP_002722443.1| RecG-like DNA helicase [Brachyspira hyodysenteriae WA1]
 gi|225216005|gb|ACN84739.1| RecG-like DNA helicase [Brachyspira hyodysenteriae WA1]
          Length = 696

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 215/673 (31%), Positives = 344/673 (51%), Gaps = 22/673 (3%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           +     +   +GVG KY+  L+K             DL+ + P ++ DR    K+ E  E
Sbjct: 9   DIFTKSIKYSKGVGPKYAEILAK------KGIITLYDLIAFFPRTYDDRRKTLKLHEALE 62

Query: 67  ERIVT--ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
            +  T  +   +   SSF  Q +    +++ DG     +  +  +   L     +G K+ 
Sbjct: 63  NKDKTSVVYVEVIDVSSFTFQYKNKPLVIVTDGIAICEVPIYGGR---LPAGVSKGAKLY 119

Query: 125 VTGK-IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           +TGK I+  + ++      +   +S  +++  I  +Y L  GLS    + +IV+ L    
Sbjct: 120 LTGKFIRSGRGKLQCRMTEFEKPSSNALSYGKIVPIYPLTEGLSQKKLRTLIVDELVGFE 179

Query: 184 VLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
              ++ I   + +K    S   +   +H P     FE  + ARE L ++E L  Q   L 
Sbjct: 180 KNMKYDIPSVIKKKYRLKSFVPSIMEMHFPTS---FEALAEARESLIFEEFLTFQYIHLS 236

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            R+          N    +   +  ++ F  T  Q  AI++I  D+    +M R+LQGDV
Sbjct: 237 ERRPNILIKEERYN-SANLLDNVKSSLSFELTSDQLDAIEEIKNDLFSNKQMFRLLQGDV 295

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ----IIVEIITGN 358
           G+GKT+VA +      E+G Q   +AP  ILA QHY   KK  +       I ++I+T +
Sbjct: 296 GAGKTIVAFLTALIPAESGFQTAFLAPTEILALQHYNTFKKLIKAAGLEDTIKIDILTSS 355

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           + Q  R   L+R+  G+++I++GTH++  D + +  L   IVDEQ RFG  QR KL  K 
Sbjct: 356 VNQNERGYLLKRLREGKSYILVGTHSIIYDEVIFKNLSYAIVDEQQRFGAAQRNKLLSKG 415

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                LLMTATPIP++L LT  G++D+S I   P+ RK + T    +   D   + LK  
Sbjct: 416 ENVDFLLMTATPIPQSLALTLFGELDLSIIKSMPSSRKGVLTKYKELYERDHCYKFLKSR 475

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSF 537
           +++G++ Y + P IE    S      E   +   +F+   I +IHG+M D +KE +M+ F
Sbjct: 476 IAKGEQGYVVFPLIENNDSSFITLSSEFQRAKETYFSDIQIEVIHGKMKDEEKEYIMNRF 535

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G  K+L +TTVIEVGID  +A+ I+IE AE FGL+QLHQLRGRVGRG+++  C L+ H
Sbjct: 536 SSGEIKVLFSTTVIEVGIDNPNATTILIEGAERFGLSQLHQLRGRVGRGDKLGYCYLILH 595

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             L+     R++++  T DGF I+E+DL+ R  GE LG +QSG+P F +        ++ 
Sbjct: 596 SELNDIIKERINIICETTDGFKISEKDLELRGAGEFLGDRQSGIPDFKLGNIIKDKEIMR 655

Query: 658 IARKDAKHILTQD 670
            A+ + + +L  +
Sbjct: 656 KAKDEMRSLLRDE 668


>gi|226321047|ref|ZP_03796590.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 29805]
 gi|226233571|gb|EEH32309.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 29805]
          Length = 686

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 212/666 (31%), Positives = 343/666 (51%), Gaps = 22/666 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR---PKI 61
           FL+     L    G+G+K    L+ +            DL+ + P  + DR      P  
Sbjct: 2   FLHEFEYELKDIGGLGEKGVERLNNLQ------IFNVKDLIEFFPVKYEDRQNIQTFPDF 55

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEG 120
           S++    ++T+   +  H  F    ++  K+ +     E   +L F R    L+NVF   
Sbjct: 56  SKVKSCDMMTVF-TVLGHKKFGDSSKKNLKLTVKSINEEPFEILLFNR--AFLENVFKID 112

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +K  +  K        +    ++    ++ +   F  I  VYSL  GL+       + EA
Sbjct: 113 KKFYIYSKFTYNDYSGLWSCSNFDSEVYSDKPERFKKILPVYSLTEGLTSKKISLYVKEA 172

Query: 179 LSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L       +  I + L++K S  S+++A   IH P   +  E    A++ L Y E+   Q
Sbjct: 173 LEYFFKFGQTDIPRFLIEKYSLLSLSDALKEIHFPSSLEMLE---KAKKTLIYREIFLLQ 229

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
                  +  K       ++   + +K++ ++PF  T+ Q+ +I +I  D++    M R+
Sbjct: 230 FFS--RYRSSKILFREKKDLSKDLLEKVVSSLPFELTEDQKISIDEIFFDLNSSKPMNRL 287

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL++    +EAG Q   MAP  +LA+QHY+ +        I + ++TG
Sbjct: 288 LQGDVGSGKTLVALLSGLPLIEAGYQVAFMAPTDLLARQHYDNLSNILAPFNISMTLLTG 347

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++ +  + +ALE I +G + +I+GTHA+F +S ++ +L  VI+DEQH+FGV QR +L  K
Sbjct: 348 SLRKKDKEQALESIRNGTSGLIVGTHAIFYESTEFKRLAYVIIDEQHKFGVVQREELKNK 407

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                +LLM+ATPIPR+  LT  GD+++S I   P GR PI T +      D+V E L+ 
Sbjct: 408 GEGVDMLLMSATPIPRSFALTLFGDLEVSFIKTLPKGRLPITTYLARHGNEDKVYEFLRK 467

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDS 536
            L +G + Y++ P I   ++   + V      L E F   +  ++H ++    KE +M +
Sbjct: 468 ELLKGHQVYFVYPLISSSEKFELKDVNNMCLKLKEVFGEYVVDMLHSKLPSDLKEEIMKN 527

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+AT+VIEVGID  +A+ +++E+AE FGL+ LHQ+RGRVGR    S   LLY
Sbjct: 528 FYSKKVDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRVGRSNLQSFFFLLY 587

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PL+     RL  +K   DGF IAEEDL+ R  G + G++Q+G  K  IA       ++
Sbjct: 588 KEPLTSAGKFRLKTIKENLDGFKIAEEDLRLRGPGNLFGLEQAGYLKLKIANFVDDREII 647

Query: 657 EIARKD 662
            + R++
Sbjct: 648 VLVREE 653


>gi|51598833|ref|YP_073021.1| ATP-dependent DNA helicase RecG [Borrelia garinii PBi]
 gi|51573404|gb|AAU07429.1| DNA recombinase [Borrelia garinii PBi]
          Length = 686

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 211/668 (31%), Positives = 342/668 (51%), Gaps = 26/668 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR---PKI 61
           FL+     L    G+G+K    L  +            DL+ + P  + DR      P  
Sbjct: 2   FLHEFEYELKGISGLGEKGVERLKNLQ------IFNVKDLIEFFPVKYEDRQNIQTFPDF 55

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFF 118
           S++    ++T+   +  H  F    ++  K+    +ND + EI L         L+NVF 
Sbjct: 56  SKVKSFDMMTVF-TVIGHKKFGDSSKKNLKLTARSINDESFEILL----FNRAFLENVFR 110

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
             +K  +  K        +    ++     +     F  I  VYSL  GL+       + 
Sbjct: 111 IDKKFYIYSKFTYNDYSGLWSCSNFDSEVFSDSPERFKKILPVYSLTEGLTSKKISLYVR 170

Query: 177 EALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           EAL       +  I K L++K S  S++EA   IH P   +  E     ++ L Y E+  
Sbjct: 171 EALEYFFKFGQTDIPKFLIEKYSLLSLSEALKEIHFPSSLEMLERA---KKTLIYREIFL 227

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q       +  K       ++   + ++++ ++PF  T+ Q+ ++ +I  D+S    M 
Sbjct: 228 LQFFS--RYRSSKVLFREKKHLSRDLLERVVLSLPFELTEDQKISVDEIFSDLSSSKPMN 285

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++    +EAG Q   MAP  +LA+QHY+ +     +  I V ++
Sbjct: 286 RLLQGDVGSGKTLVALLSGLPLIEAGYQVAFMAPTDLLARQHYDNLSNILSSFNISVTLL 345

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++ +  + +ALE I  G + +I+GTH++F +S ++ +L  VI+DEQH+FGV QR +L 
Sbjct: 346 TGSLKKKDKEQALESIKSGVSGLIVGTHSIFYESTEFKRLAYVIIDEQHKFGVVQREELK 405

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K     +LLM+ATPIPR+  LT  GD+++S I   P GR PI T +      D+V + L
Sbjct: 406 NKGEGVDILLMSATPIPRSFALTLFGDLEVSLIKTLPKGRLPITTYLAKHGNEDKVYDFL 465

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVM 534
           +  L +G + Y++ P I   ++   + V   +  L E F+  +  ++H ++    KE +M
Sbjct: 466 RKELLKGHQVYFVYPLISSSEKFELKDVNNMYLKLKEVFSEYVVDMLHSKLPSDLKEEIM 525

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F +    +L+AT+VIEVGID  +A+ +++E+AE FGL+ LHQ+RGR+GR    S   L
Sbjct: 526 KNFYSKKVDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRIGRSNLQSFFFL 585

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL+     RL  +K   DGF IAEEDL+ R  G + G++Q+G  K  I+       
Sbjct: 586 LYKEPLTSAGKFRLKTIKENLDGFKIAEEDLRLRGPGNLFGLEQAGYLKLKISNFVDDRD 645

Query: 655 LLEIARKD 662
           ++ + RK+
Sbjct: 646 VIVLIRKE 653


>gi|15594926|ref|NP_212715.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi B31]
 gi|195941715|ref|ZP_03087097.1| DNA recombinase (recG) [Borrelia burgdorferi 80a]
 gi|216264673|ref|ZP_03436665.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 156a]
 gi|218249676|ref|YP_002375089.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi ZS7]
 gi|221218004|ref|ZP_03589470.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 72a]
 gi|224532735|ref|ZP_03673352.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi WI91-23]
 gi|224533522|ref|ZP_03674111.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi CA-11.2a]
 gi|225549658|ref|ZP_03770624.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 118a]
 gi|226321887|ref|ZP_03797413.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi Bol26]
 gi|3914613|sp|O51528|RECG_BORBU RecName: Full=ATP-dependent DNA helicase recG
 gi|2688498|gb|AAC66942.1| DNA recombinase (recG) [Borrelia burgdorferi B31]
 gi|215981146|gb|EEC21953.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 156a]
 gi|218164864|gb|ACK74925.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi ZS7]
 gi|221191952|gb|EEE18173.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 72a]
 gi|224512353|gb|EEF82737.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi WI91-23]
 gi|224513195|gb|EEF83557.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi CA-11.2a]
 gi|225369935|gb|EEG99382.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 118a]
 gi|226233076|gb|EEH31829.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi Bol26]
 gi|312148401|gb|ADQ31060.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi JD1]
 gi|312149549|gb|ADQ29620.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi N40]
          Length = 686

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 212/666 (31%), Positives = 343/666 (51%), Gaps = 22/666 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR---PKI 61
           FL+     L    G+G+K    L+ +            DL+ + P  + DR      P  
Sbjct: 2   FLHEFEYELKGIGGLGEKGVERLNNLQ------IFNVKDLIEFFPVKYEDRQNIQTFPDF 55

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEG 120
           S++    ++T+   +  H  F    ++  K+ +     E   +L F R    L+NVF   
Sbjct: 56  SKVKSCDMMTVF-TVLGHKKFGDSSKKNLKLTVKSINEEPFEILLFNR--AFLENVFKID 112

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +K  +  K        +    ++    ++ +   F  I  VYSL  GL+       + EA
Sbjct: 113 KKFYIYSKFTYNDYSGLWSCSNFDSEVYSDKPERFKKILPVYSLTEGLTSKKISLYVKEA 172

Query: 179 LSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L       +  I + L++K S  S+++A   IH P   +  E    A++ L Y E+   Q
Sbjct: 173 LEYFFKFGQTDIPRFLIEKYSLLSLSDALKEIHFPSSLEMLE---KAKKTLIYREIFLLQ 229

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
                  +  K       ++   + +K++ ++PF  T+ Q+ +I +I  D++    M R+
Sbjct: 230 FFS--RYRSSKILFREKKDLSKDLLEKVVSSLPFELTEDQKISIDEIFFDLNSSKPMNRL 287

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL++    +EAG Q   MAP  +LA+QHY+ +        I + ++TG
Sbjct: 288 LQGDVGSGKTLVALLSGLPLIEAGYQVAFMAPTDLLARQHYDNLSNILAPFNISMTLLTG 347

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++ +  + +ALE I +G + +I+GTHA+F +S ++ +L  VI+DEQH+FGV QR +L  K
Sbjct: 348 SLRKKDKEQALESIRNGTSGLIVGTHAIFYESTEFKRLAYVIIDEQHKFGVVQREELKNK 407

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                +LLM+ATPIPR+  LT  GD+++S I   P GR PI T +      D+V E L+ 
Sbjct: 408 GEGVDMLLMSATPIPRSFALTLFGDLEVSFIKTLPKGRLPITTYLARHGNEDKVYEFLRK 467

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDS 536
            L +G + Y++ P I   ++   + V      L E F   +  ++H ++    KE +M +
Sbjct: 468 ELLKGHQVYFVYPLISSSEKFELKDVNNMCLKLKEVFGEYVVDMLHSKLPSDLKEEIMKN 527

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+AT+VIEVGID  +A+ +++E+AE FGL+ LHQ+RGRVGR    S   LLY
Sbjct: 528 FYSKKVDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRVGRSNLQSFFFLLY 587

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PL+     RL  +K   DGF IAEEDL+ R  G + G++Q+G  K  IA       ++
Sbjct: 588 KEPLTSAGKFRLKTIKENLDGFKIAEEDLRLRGPGNLFGLEQAGYLKLKIANFVDDREII 647

Query: 657 EIARKD 662
            + R++
Sbjct: 648 VLVREE 653


>gi|163840526|ref|YP_001624931.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162954002|gb|ABY23517.1| RecG [Renibacterium salmoninarum ATCC 33209]
          Length = 733

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 227/733 (30%), Positives = 361/733 (49%), Gaps = 62/733 (8%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL     +GK  +  + K     N +     DLL Y P  +++R    +IS +  +  VT
Sbjct: 9   PLDRL--LGKASAGAIEK-----NLSLQTVGDLLNYFPRRYLNRGELTQISSLPFDEEVT 61

Query: 72  ITGYISQHSSFQLQKRRPYK--ILLNDGT----GEITLLFFYRKTEMLKNVFFEGRKITV 125
           +   +   +S ++++R+     +++   T    G + + FF       +     G +   
Sbjct: 62  LIARVVSTNSRRMRQRKGTITDVVVTGDTSTGAGSLKISFFNG--WRAERELLPGARAMF 119

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE---AVYSLPTGLSVDLFKKIIVEALSRL 182
           +GK+      + + +P Y+  ++   +  L      +Y     L        I   L  +
Sbjct: 120 SGKVGFFNRALTLTNPDYVLIDADGADEELARQPIPIYPATAKLPSWKIANAISALLDAI 179

Query: 183 PV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            +    + + ++  Q++ F  + EA+ +IH P +         AR+R  Y E L  Q AL
Sbjct: 180 DLSSFDDPVPEETAQREEFLPLPEAYRMIHRPTEPT---QWKLARDRFRYQEALVLQTAL 236

Query: 241 LLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
              R Q   +                  ++PF+ T  Q    +++  +++  + M R+LQ
Sbjct: 237 ARRRAQSAAQQTQSRPGSSTGLLASFDASLPFTLTNGQREIGEELSAELAGNSPMHRLLQ 296

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ---------- 349
           G+VGSGKTLVAL AM   +++GGQA ++AP  +LA QH++ I+                 
Sbjct: 297 GEVGSGKTLVALRAMLQVIDSGGQAALLAPTEVLAAQHFQSIRATLGPLAEGGMLGGFDG 356

Query: 350 -IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
                ++TG MP A ++KAL   A GQA I+IGTHAL  D +Q++ L L++VDEQHRFGV
Sbjct: 357 GTQAALLTGTMPAAVKKKALLDAASGQAGIVIGTHALLSDQVQFFDLGLIVVDEQHRFGV 416

Query: 409 QQRLKLTQKATAP-HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           +QR  L  KA  P H+L+MTATPIPRT+ +T  GD++ S + E PAGR PI T ++ +  
Sbjct: 417 EQRDALRLKAIHPPHLLVMTATPIPRTVAMTVFGDLETSVLRELPAGRAPISTFVVGLAE 476

Query: 468 ----IDEVIERLKVVLSEGKKAYWICPQI------------------EEKKESNFRSVVE 505
                  + +R +  +  G + Y +CP+I                   E       SV+E
Sbjct: 477 NPAWFSRLWQRSREEIDAGHQVYVVCPRIGEAEGAEPPSGDEPDRLPSEDDAKAMASVLE 536

Query: 506 RFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
               L    +     I  +HGR+    K  VM  F  G  ++L++TTV+EVG+DV +A++
Sbjct: 537 VVEELRSEPSLAGCRIEALHGRLDPTQKSQVMADFAAGGVQVLVSTTVVEVGVDVHNATL 596

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           +II +A+ FG++QLHQLRGRVGRG    + +L+        S  RL  +  T DGF +++
Sbjct: 597 MIILDADRFGISQLHQLRGRVGRGGLPGTALLVTELAPEHPSRRRLDAVAATTDGFALSQ 656

Query: 623 EDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           EDLK R+EG+ILG  QSG      + +   H+S++E+AR DA  I+  DP+L+       
Sbjct: 657 EDLKLRREGDILGASQSGGRSTLRLLRVLEHESVIELARSDANKIIADDPELSKHSALEA 716

Query: 682 RILLYLYQYNEAF 694
            I   L    EAF
Sbjct: 717 AIEASLNPEREAF 729


>gi|225548726|ref|ZP_03769773.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 94a]
 gi|225370756|gb|EEH00192.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 94a]
          Length = 686

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 212/666 (31%), Positives = 343/666 (51%), Gaps = 22/666 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR---PKI 61
           FL+     L    G+G+K    L+ +            DL+ + P  + DR      P  
Sbjct: 2   FLHEFEYELKGIGGLGEKGVERLNNLQ------IFNVKDLIEFFPVKYEDRQNIQTFPDF 55

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEG 120
           S++    ++T+   +  H  F    ++  K+ +     E   +L F R    L+NVF   
Sbjct: 56  SKVKSCDMMTVF-TVLGHKKFGDSSKKNLKLTVKSINEEPFEILLFNR--AFLENVFKID 112

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +K  +  K        +    ++    ++ +   F  I  VYSL  GL+       + EA
Sbjct: 113 KKFYIYSKFTYNDYSGLWSCSNFDSEVYSDKPERFKKILPVYSLTEGLTSKKISLYVKEA 172

Query: 179 LSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L       +  I + L++K S  S+++A   IH P   +  E    A++ L Y E+   Q
Sbjct: 173 LEYFFKFGQTDIPRFLIEKYSLLSLSDALKEIHFPSSLEMLE---KAKKTLIYREIFLLQ 229

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
                  +  K       ++   + +K++ ++PF  T+ Q+ +I +I  D++    M R+
Sbjct: 230 FFS--RYRSSKILFREKKDLSKDLLEKVVSSLPFELTEDQKISIDEIFFDLNSSKPMNRL 287

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL++    +EAG Q   MAP  +LA+QHY+ +        I + ++TG
Sbjct: 288 LQGDVGSGKTLVALLSGLPLIEAGYQVAFMAPTDLLARQHYDNLSNILAPFNISMTLLTG 347

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++ +  + +ALE I +G + +I+GTHA+F +S ++ +L  VI+DEQH+FGV QR +L  K
Sbjct: 348 SLRKKDKEQALESIRNGTSGLIVGTHAIFYESTEFKRLAYVIIDEQHKFGVVQREELKNK 407

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                +LLM+ATPIPR+  LT  GD+++S I   P GR PI T +      D+V E L+ 
Sbjct: 408 GEGVDMLLMSATPIPRSFALTLFGDLEVSFIKTLPKGRLPITTYLARHGNEDKVYEFLRK 467

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDS 536
            L +G + Y++ P I   ++   + V      L E F   +  ++H ++    KE +M +
Sbjct: 468 ELLKGHQVYFVYPLISSSEKFELKGVNNMCLKLKEVFGEYVVDMLHSKLPSDLKEEIMKN 527

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+AT+VIEVGID  +A+ +++E+AE FGL+ LHQ+RGRVGR    S   LLY
Sbjct: 528 FYSKKVDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRVGRSNLQSFFFLLY 587

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PL+     RL  +K   DGF IAEEDL+ R  G + G++Q+G  K  IA       ++
Sbjct: 588 KEPLTSAGKFRLKTIKENLDGFKIAEEDLRLRGPGNLFGLEQAGYLKLKIANFVDDREII 647

Query: 657 EIARKD 662
            + R++
Sbjct: 648 VLVREE 653


>gi|220912992|ref|YP_002488301.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
 gi|219859870|gb|ACL40212.1| DEAD/DEAH box helicase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 757

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 232/751 (30%), Positives = 367/751 (48%), Gaps = 85/751 (11%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           +GK+ +  + K +     N T    LL Y P  ++ R     IS++  +  VT+   +  
Sbjct: 13  IGKRSAGVIEKHL-----NITTVEGLLNYFPRRYMARGELTPISDLPRDEEVTLIARVLS 67

Query: 79  HSSFQLQKRRPYK--ILLNDGTGE------------------ITLLFFYRKTEMLKNVFF 118
            ++  +Q RR     ++++D  G                   + + FF       K+   
Sbjct: 68  SNTRSMQARRGTITDVVISDDDGRNGLKLVGGTDFHGKVPGTLKISFFNAFRA--KSELL 125

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHN--------SQDVNFPLIE-AVYSLPTGLSVD 169
            GR+   +GK+   K  + + +P +   +                +   VY     L   
Sbjct: 126 PGRRALFSGKVTSFKGSLGLTNPDFQVLDSDPFTAGGDDPEKLAAMPIPVYPATAKLPSW 185

Query: 170 LFKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER 227
             +K+I   L  + +  LP+ + + +  ++ F  +A+A+ +IH P  A D++     R+R
Sbjct: 186 KIQKVIATLLETVDLAALPDPVPETVTAREEFLPLADAYRLIHEPETAADWQRA---RQR 242

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQ 286
             Y E L  Q AL   R Q   E                 RN+PF+ T  Q +  K +  
Sbjct: 243 FRYQEALVLQSALARRRSQLAAEEATARRPVRDGLLAAFDRNLPFTLTDGQAAVGKTLAA 302

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
            ++  + M R+LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LA QH++ I++   
Sbjct: 303 GLAADHPMNRLLQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHFDSIRRTLG 362

Query: 347 NT---------------QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
                             + V ++TG+MP A RR+A+   A G A I+IGTHAL  D++ 
Sbjct: 363 PLSRDGLLGAFGGTDGQAVQVTLLTGSMPAAARRQAMLDAASGTAGIVIGTHALLSDNVS 422

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +Y L L++VDEQHRFGV+QR  L  KA   PH+L+MTATPIPRT+ +T  GD++ S + E
Sbjct: 423 FYDLGLIVVDEQHRFGVEQRDALRAKARKPPHLLVMTATPIPRTVAMTVFGDLETSTLDE 482

Query: 451 KPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            P GR PI T ++ +         +  R +  +  G + Y +CP+I    + +F      
Sbjct: 483 LPKGRAPISTHLVGLAENPGWAGRIWARAREEIDAGHQVYVVCPKIGTDDDGDFTPGEAE 542

Query: 507 -------------------FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKL 544
                                 L +  + +   +A +HGR     K + M  F   + KL
Sbjct: 543 PAAADLEENGRELASVTAVVEQLQDEPSIAGVPVAPLHGRQDPDLKSATMAGFAANSIKL 602

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTVIEVG+DV +A++++I +A+ FG++QLHQLRGRVGRG    +C+L+        S
Sbjct: 603 LVSTTVIEVGVDVHNATMMVILDADRFGISQLHQLRGRVGRGGLPGTCLLVTSLERGHPS 662

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDA 663
             RL  +  T DGF++++EDLK R+EG+ILG  QSG      + +   H+ ++  AR DA
Sbjct: 663 RRRLDAVAATTDGFVLSQEDLKLRREGDILGASQSGGRSTLRLLRVLEHEDIIAQARSDA 722

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           + I+T D  L +    +  I  YL    EAF
Sbjct: 723 QEIVTGDASLAAHPELADAIDRYLNPEKEAF 753


>gi|312140466|ref|YP_004007802.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|325675917|ref|ZP_08155600.1| DNA helicase RecG [Rhodococcus equi ATCC 33707]
 gi|311889805|emb|CBH49122.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
 gi|325553155|gb|EGD22834.1| DNA helicase RecG [Rhodococcus equi ATCC 33707]
          Length = 751

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 213/750 (28%), Positives = 368/750 (49%), Gaps = 84/750 (11%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           G K +  L         +     DLL ++P  +  +       E  E   VTI   + + 
Sbjct: 13  GAKTADAL-----VEAFDIRTVEDLLRHYPHRYAAQGRELTEKEPEEGSHVTIIARVVKA 67

Query: 80  SSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
               ++ RR    K++L   +  + + FF      +K+    G +   +G +K  +N+  
Sbjct: 68  DVVNMKSRRGQMLKVVLAAESQSVDVTFFN--PHKVKHAVRVGVRAMFSGTVKYFRNKWS 125

Query: 138 MVHPHYIFHNSQDVNFP-----------------------------------LIEAVYSL 162
           + HP Y+                                              +  +Y  
Sbjct: 126 LTHPSYLILPEPAEGEDPVVSMAHVQGAGSLAGMARATQDSGSGVDMSIFDRELIPLYPA 185

Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222
              +      + + + L +L  + + +   +  +     + EA  ++H P    D     
Sbjct: 186 TREVESWTILRCVRQVLDQLDTVEDPLPDAVRGEHGLIGLDEALRLVHLPETRDDI---G 242

Query: 223 PARERLAYDELLAGQIALLLMRK--QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
            A+ERL +DE  A Q+ L   R+    +     P   +G +A      +PF  T+ Q+  
Sbjct: 243 RAQERLRFDEAAALQLVLAQRRRDIAARVAPQCPPKPDG-LAAAFDEMLPFELTEGQKEV 301

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            ++I  D+++++ M R+LQG+VGSGKT+VAL AM  AV+AG Q  ++AP  +LA QH   
Sbjct: 302 AEEISADLARRHPMNRLLQGEVGSGKTIVALRAMLQAVDAGYQCALLAPTEVLAAQHARS 361

Query: 341 IKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           +++                   V ++TG+M    RR AL  I  G + I+IGTHAL QD+
Sbjct: 362 LREMLGPLGAAGELGAADVATKVTLLTGSMSTKARRAALLDIVTGDSGIVIGTHALIQDN 421

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDIS 446
           ++++ L  V+VDEQHRFGV+QR +L ++A     PH+L+MTATPIPRT+ +T LGD++ S
Sbjct: 422 VEFFDLGFVVVDEQHRFGVEQRDELRKRAKEGLSPHLLVMTATPIPRTIAMTVLGDLETS 481

Query: 447 KITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEE-------- 494
            + + P GR PI + ++   +    +    ER++  +++G++AY +C +I +        
Sbjct: 482 TLRQLPQGRAPIVSKVVAARQTPQWVARAWERIREEVADGRQAYVVCSRIGDGDSDAELI 541

Query: 495 ---KKESNFRSVVERFNSLH--EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
              K+    +S V+ F+ L         + ++HGR+   +K++VM  F  G   +LI TT
Sbjct: 542 KAGKEPPETKSAVDLFDELRSGPMHDLRLGLLHGRLPSDEKDAVMRDFTAGAIDVLICTT 601

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V+EVG++V +A+++++ +A+ FG++QLHQLRGRVGRG     CIL+        ++ RL+
Sbjct: 602 VVEVGVNVPNATVMVLVDADRFGVSQLHQLRGRVGRGSHQGLCILITDMMPGSPAFERLT 661

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILT 668
            +  T DGF +A+ DL+QR+EG++LG  QSG      +     H+ ++  A++ A+ ++ 
Sbjct: 662 AVAGTNDGFELAQLDLRQRREGDVLGSAQSGSATTLRLLSLLEHEDVIASAQEFARGVVD 721

Query: 669 QDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
            DPDL+   G +  +   L   +E  +F+ 
Sbjct: 722 DDPDLSRHPGLAAMVAAALD--SERIEFLE 749


>gi|189219366|ref|YP_001940007.1| RecG-like helicase [Methylacidiphilum infernorum V4]
 gi|189186224|gb|ACD83409.1| RecG-like helicase [Methylacidiphilum infernorum V4]
          Length = 694

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 226/702 (32%), Positives = 366/702 (52%), Gaps = 40/702 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            L+    VG++ +  L K+        +    LLFY P  + DR  +  +S  +++  + 
Sbjct: 5   ELAKLEYVGQRRAFLLEKL------GISSLKTLLFYLPFRYEDRRLQKPLSLAADDEKIL 58

Query: 72  ITGYISQHSSFQLQKRRPYKILL---NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
               + +    +L+ R   KI+L   +D   ++  ++F+   ++L      GRK+ V G 
Sbjct: 59  FKATVVEVKKERLKARNIIKIVLLSLDDHREKLVGIWFW---KVLPEYLSVGRKVAVYGT 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQ-----DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           ++K K +  M  P       +      ++   I  +YS  +GLS  + ++II   L ++P
Sbjct: 116 VRKFKGKWTMWQPEIECFEEEIQLQASLHISRIVPIYSTTSGLSQKILRQIIYSQLLKIP 175

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            +       +      P++  A   IH P      E   P ++R+AY E    Q+ +   
Sbjct: 176 -IESPDPYPMPADTPLPTLGFALRKIHFPDT---LEQIQPCKDRIAYHEFFIEQLRMAYR 231

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +K+  +      +    +    L ++PF+PT +Q+ A+++I +D+   + M R+L GDVG
Sbjct: 232 KKKRAEIKKRRPSRRFSLCPGFLSSLPFNPTSAQKKAMEEIDRDLESASPMNRLLLGDVG 291

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKTLVA+ A    VE G   + M+P G LA QHY  +KK+  +  + +  I  ++ Q  
Sbjct: 292 SGKTLVAVYAAIKTVERGQNVLFMSPTGALASQHYLTLKKWLSSLAVPLFYIGRDVGQKE 351

Query: 364 R-----------RKALERIAHGQA--HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
                        +    ++ G     + +GTHAL   S     L LVI+DEQH+FGV+Q
Sbjct: 352 EFLPTDNENVFFHEHPSDLSPGSLPGKVFVGTHALLFRSFNPDSLGLVIIDEQHKFGVEQ 411

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           R  L +KA  P +L MTATPIPRTL L+  GD+D S +   P  R  I T I     + +
Sbjct: 412 RAALAKKALYPDILTMTATPIPRTLALSLYGDLDFSILDVPPINRGKIITAIRSSESLPK 471

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDID 529
           + E +K +L +G +AY + P I E  + +  S+ + +  L + F    + ++HG M  ++
Sbjct: 472 IWEFMKRLLRQGTQAYVVFPTIHESNDPDLPSLEKGYEELKKIFKEFRLGMVHGEMPPLE 531

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E V +SF+    +LL AT++IEVGID+ +A I+++  A  FGLAQLHQ+RGRVGRG  +
Sbjct: 532 REVVFESFRKNEIRLLAATSIIEVGIDIPNARIMVVFGAHRFGLAQLHQIRGRVGRGPGV 591

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S CILL     S+ S  RL +L+ ++DGF IA+ED+K R  GE  G +QSG   ++ A P
Sbjct: 592 SYCILL-ADKQSQESRKRLKILELSKDGFEIAKEDMKLRGLGEFFGSQQSGKHTYITADP 650

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
              +SLL  AR+ A  IL++DPDL+     + ++  YL + N
Sbjct: 651 IAQESLLLKAREQALKILSEDPDLS----LNPKLRKYLKEEN 688


>gi|187931154|ref|YP_001891138.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712063|gb|ACD30360.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 679

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 222/665 (33%), Positives = 362/665 (54%), Gaps = 20/665 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           GVG+     L+K       N     DLL   P  + D      I+ +       I G ++
Sbjct: 8   GVGEATIKALAK------YNIHDPNDLLTIFPKDYKDTRVITPINHLVAGNRSLIQGRVT 61

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
            + +++   ++  +  +ND TG  +++ F      L  +  +   +   GK++       
Sbjct: 62  -NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILEKSEYVRCYGKVE-FSLSPQ 118

Query: 138 MVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK 196
           MVHP +   +N +        AVY     +   L  K+I++ L    V    I   LL++
Sbjct: 119 MVHPEWATVNNGECALKQGFSAVYR-FKKIPDRLISKMILKMLQDNRV-ENIIPSQLLRR 176

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
            +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K   K     + 
Sbjct: 177 FNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNTVKAQAPQLF 236

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +      +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA  A
Sbjct: 237 LTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIAAYA 296

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R++L++I   + 
Sbjct: 297 AVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKIKDQKD 356

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT------APHVLLMTATP 430
            +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K++       PH L+++ATP
Sbjct: 357 CVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIISATP 416

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +  G++ YW+CP
Sbjct: 417 IPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYWVCP 476

Query: 491 QIEEKKESNFRSVVER-FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +EE +  +F   V+  +  L E     ++ +++G M   DK   M +FK     +L+AT
Sbjct: 477 LVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVLVAT 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+    RL
Sbjct: 537 TVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGKRRL 596

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           S+++ ++DGF +AE+DL+ R  G+I+G +QSG+  F       +    +   + A  +  
Sbjct: 597 SLVRESQDGFYLAEKDLEIRGAGDIIGKEQSGVSTFKTFDINEYYDNYDKVVEFADMLDK 656

Query: 669 QDPDL 673
             P+L
Sbjct: 657 HYPEL 661


>gi|119953366|ref|YP_945575.1| ATP-dependent DNA helicase RecG [Borrelia turicatae 91E135]
 gi|119862137|gb|AAX17905.1| ATP-dependent DNA helicase RecG [Borrelia turicatae 91E135]
          Length = 689

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 226/668 (33%), Positives = 341/668 (51%), Gaps = 26/668 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI--- 61
           FL+     L    G+G K       I    N N T   +L+ Y P  + DR         
Sbjct: 4   FLHEFQYDLQGISGLGNK------GIDRLHNLNITNIKELIEYFPKKYEDRQNIKTFPDP 57

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFEG 120
            E+    ++T+   + +H +F    ++  KI+      EI  +L F R    L+ VF  G
Sbjct: 58  LEVRSCELMTVF-VVLEHRNFGSNSKKNLKIIAQSENDEIFEILLFNRG--FLEGVFKVG 114

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +K  +  K        +    ++     +     F  I  VYSL  GL+       + EA
Sbjct: 115 QKFYIYSKFNYSDYTQMWSCSNFDSEVFSYNPERFKKIMPVYSLGEGLTSKKISSYVKEA 174

Query: 179 LSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L       +  I   L+ K S  S+ +A N IH P      E    A++ L Y E+   Q
Sbjct: 175 LIYFLKFGKSDIPDFLINKYSLLSLHDALNEIHFPTS---LEMLDRAKKTLIYREIFLLQ 231

Query: 238 IALLLMRKQ--FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
                       +KE  +P+N+      +++  +PF  TK QE  I +I+ D+     M 
Sbjct: 232 FFSRGKSSLVFLRKEKHLPMNL----LDQVVLKLPFRLTKDQEVVISEIIDDLKSNKPMN 287

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVA ++    +EAG Q  +M P  +LA+QHY  +    ++  I + ++
Sbjct: 288 RLLQGDVGSGKTLVAFLSSIPLIEAGYQVALMVPTDLLARQHYNNLSNMLKDFNISIALL 347

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++   +R   LE+I  G   ++IGTHA+F    ++ KL  VI+DEQH+FGV+QR KL 
Sbjct: 348 TGSLKTKNRNDVLEKIQSGTYSLVIGTHAIFSQRTKFKKLAYVIIDEQHKFGVEQREKLK 407

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K     +LLM+ATPIPR+L LT  GD+++S I   PAGR+P+ T +      D+V E L
Sbjct: 408 NKGEEVDMLLMSATPIPRSLALTLFGDLEVSLIKRGPAGRRPVTTYLAKHGNEDKVYEFL 467

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
              L +G + Y++ P I   ++ N + V     +L   F   S+A+IH ++    KE +M
Sbjct: 468 NNELGKGHQVYFVYPLISSSEKFNLKDVTSMCLNLKNIFVEYSVAMIHSKLESHVKEEIM 527

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F      +L++T+VIEVGID ++A+ I++E+AE FGL+ LHQ+RGRVGRG   S   L
Sbjct: 528 RDFYLKKIDILVSTSVIEVGIDCLNATCIVVEHAERFGLSALHQIRGRVGRGSLKSFLFL 587

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL++    RL  +K   DGF IAEEDLK R  G + G++Q+G  K  IA       
Sbjct: 588 LYKEPLTEAGKFRLKTIKENIDGFKIAEEDLKLRGPGNLFGLEQTGYLKLKIADFVEDKE 647

Query: 655 LLEIARKD 662
           ++ + R++
Sbjct: 648 VISLIREE 655


>gi|254372315|ref|ZP_04987806.1| hypothetical protein FTCG_01382 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570044|gb|EDN35698.1| hypothetical protein FTCG_01382 [Francisella novicida GA99-3549]
          Length = 648

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 221/641 (34%), Positives = 355/641 (55%), Gaps = 20/641 (3%)

Query: 18  GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS 77
           GVG+     L+K       N     DLL   P  + D      I+ +   +   I G ++
Sbjct: 8   GVGEATIKALAK------CNIHDPNDLLTIFPKDYKDTRVITPINHLVAGKRSLIQGRVT 61

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
            + +++   ++  +  +ND TG  +++ F      L  +      +   GK++       
Sbjct: 62  -NLTYKKFGKKFLRFNINDNTGFCSVILFKFYPNQLA-ILERSEYVRCYGKVE-FSLSPQ 118

Query: 138 MVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK 196
           MVHP +   +N +        AVY L   +   L  K+I++ L    V    I   LL++
Sbjct: 119 MVHPEWATVNNGECALKQGFSAVYRLKK-IPDRLISKMILKMLQDNRV-ENIIPSQLLRR 176

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
            +  S  +A   +H      D ++ S AR  + ++E+LA ++A   + K   K     + 
Sbjct: 177 FNLISFCDALYYVHALTNFIDEKYLSIARFSIKFEEMLAYKLAEQNIYKNIVKAQAPQLF 236

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +      +    +P+  T +Q+ AI +IL D+ + N M R+LQGDVG+GKT+VA IA  A
Sbjct: 237 LTKIQQNEFYEKLPYQLTNAQQRAITEILDDIKKSNAMNRLLQGDVGAGKTIVATIAAYA 296

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AV++G Q  +MAP  ILA+QH+ F+ +Y  +  I V  + G +     R++L++I   + 
Sbjct: 297 AVKSGYQVAMMAPTEILAEQHFSFLSQYLASFDIKVIPLLGKLSAKQTRESLDKIKDQKD 356

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT------APHVLLMTATP 430
            +++GTHA+FQ+ ++Y  L LVIVDEQHRFGV+QRL L  K++       PH L+++ATP
Sbjct: 357 CVVVGTHAIFQERVEYCNLGLVIVDEQHRFGVEQRLALVSKSSSNFSDLTPHQLIISATP 416

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +T  G++ +S + E P  RKPI T ++   +   +IE++K  +  G++ YW+CP
Sbjct: 417 IPRTLAMTLYGNLKLSILDELPPKRKPIITTVLNRAKKQNLIEKVKQAVLRGEQVYWVCP 476

Query: 491 QIEEKKESNFRSVVER-FNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +EE +  +F   V+  +  L E     ++ +++G M   DK   M +FK     +L+AT
Sbjct: 477 LVEESENMDFLQDVKTLYQELLEALGKENVGLVYGSMKSKDKIEQMAAFKAKKYAVLVAT 536

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +A+I+II+NAE  G++QLHQLRGRVGRG + S CILLY   +S+    RL
Sbjct: 537 TVIEVGVDVPNATIMIIDNAERLGISQLHQLRGRVGRGAKESYCILLYSDKISEVGKRRL 596

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S+++ ++DGF +AE+DL+ R  G+ILG +QSG+  F     
Sbjct: 597 SLVRESQDGFYLAEKDLEIRGAGDILGKEQSGVSTFKTFDI 637


>gi|219684327|ref|ZP_03539271.1| ATP-dependent DNA helicase RecG [Borrelia garinii PBr]
 gi|219672316|gb|EED29369.1| ATP-dependent DNA helicase RecG [Borrelia garinii PBr]
          Length = 686

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 212/668 (31%), Positives = 341/668 (51%), Gaps = 26/668 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR---PKI 61
           FL+     L    G+G+K    L  +            DL+ + P  + DR      P  
Sbjct: 2   FLHEFEYELKGISGLGEKGVERLKNLQ------ILNVKDLIEFFPVKYEDRQNIQTFPDF 55

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFF 118
           S++    ++T+   +  H  F    ++  K+    +ND   EI L         L+NVF 
Sbjct: 56  SKVKSFDMMTVF-TVVGHKKFGDSSKKNLKLTARSINDEPFEILL----FNRAFLENVFR 110

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
             +K  +  K        +    ++           F  I  VYSL  GL+       + 
Sbjct: 111 IDKKFYIYSKFTYNDYSGLWSCSNFDSEVFTDSPERFKKILPVYSLTEGLTSKKISLYVR 170

Query: 177 EALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           EAL       +  I K L++K S  S++EA   IH P   +  E    A++ L Y E+  
Sbjct: 171 EALEYFFKFGQTDIPKFLIEKYSLLSLSEALKEIHFPSSLEMLE---KAKKTLIYREIFL 227

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q       +  K       ++   + ++++ ++PF  T+ Q+ ++ +I  D+S    M 
Sbjct: 228 LQFFS--RYRSSKVLFREKKHLSRDLLERVVSSLPFELTEDQKISVDEIFSDLSSSKPMN 285

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++    +EAG Q   MAP  +LA+QHY+ +     +  I V ++
Sbjct: 286 RLLQGDVGSGKTLVALLSGLPLIEAGYQVAFMAPTDLLARQHYDNLSNILSSFNIPVTLL 345

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++ +  + +ALE I  G + +I+GTH++F +S ++ +L  VI+DEQH+FGV QR +L 
Sbjct: 346 TGSLKKKDKEQALESIKSGVSGLIVGTHSIFYESTEFKRLAYVIIDEQHKFGVVQREELK 405

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K     +LLM+ATPIPR+  LT  GD+++S I   P GR PI T +      D+V + L
Sbjct: 406 NKGEGVDILLMSATPIPRSFALTLFGDLEVSLIKTLPKGRLPITTYLAKHGNEDKVYDFL 465

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVM 534
           +  L +G + Y++ P I   ++   + V   +  L E F+  +  ++H ++    KE +M
Sbjct: 466 RKELLKGHQVYFVYPLISSSEKFELKDVNNMYLKLKEVFSEYVVDMLHSKLPSDLKEEIM 525

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F +    +L+AT+VIEVGID  +A+ +++E+AE FGL+ LHQ+RGR+GR    S   L
Sbjct: 526 KNFYSKKVDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRIGRSNLQSFFFL 585

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL+     RL  +K   DGF IAEEDL+ R  G + G++Q+G  K  I+       
Sbjct: 586 LYKEPLTSAGKFRLKTIKENLDGFKIAEEDLRLRGPGNLFGLEQAGYLKLKISNFVDDRD 645

Query: 655 LLEIARKD 662
           ++ + RK+
Sbjct: 646 VIVLIRKE 653


>gi|34391529|gb|AAN61057.1| RecG [Borrelia hermsii]
          Length = 687

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 218/666 (32%), Positives = 334/666 (50%), Gaps = 22/666 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI--- 61
           FL+     L    G+GKK    L+ +        T   +L+ Y P  + DR         
Sbjct: 2   FLHEFKYDLQGISGLGKKGLERLNSLQ------ITNIRELIEYFPKKYEDRKNIKTFPDS 55

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFEG 120
            E+    ++T+   + +H  F    +R  K++      EI  +L F R    L+ VF  G
Sbjct: 56  LEVRNCELMTVF-TVLEHRDFGNNFKRNLKLIAQSENNEIFEILLFNRG--FLEGVFKVG 112

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +K  +  K        +    ++     +     F  I  VYSL  GL+       + EA
Sbjct: 113 QKFYIYSKFNYNDYTQMWSCSNFDSEVFSCNPERFKKIIPVYSLSEGLTSKKISSYVKEA 172

Query: 179 LSRLPVL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L          + + L+ K S     EA N IH P     FE    A++ L Y E+   Q
Sbjct: 173 LVYFLKFGQSDVPEFLINKYSLLPFHEALNEIHFPSS---FEMLEKAKKTLIYREIFLLQ 229

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
                  K     +    N+   +  +I+  +PF  TK Q  AI +I+ D      M R+
Sbjct: 230 FFS--RGKSSVFFLRKERNLPRNLLDQIILKLPFKLTKDQRVAIDEIINDPESNKPMNRL 287

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKT+VA ++    +EAG Q  +M P  +LA+QHY  +    ++  + +  +TG
Sbjct: 288 LQGDVGSGKTIVAFLSSIPLIEAGYQVALMVPTDLLARQHYNNLANILKDFNVSIAFLTG 347

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++ +  R + LE+I  G   ++IGTHA+F    ++ +L  +I+DEQH+FGV+QR +L  K
Sbjct: 348 SLKKRDRDEVLEKIQSGTYSLVIGTHAIFSQGTKFKRLAYIIIDEQHKFGVEQREELKNK 407

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                VLL++ATPIPR+L LT  GD++IS I   PAGR P+ T +      ++V E LK 
Sbjct: 408 GEEVDVLLISATPIPRSLALTLFGDLEISLIRRGPAGRIPVTTYLAKHGNEEKVYEFLKN 467

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L++G + Y++ P I   +  N +       +L   F   S+ +IH ++    KE +M  
Sbjct: 468 ELAKGHQVYFVYPLISSSQRFNLKDATSMCLNLKNIFVEYSVEMIHSKLESHVKEEIMHD 527

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F      +L+AT+VIEVGID  +A+ +++E+AE FGL+ LHQ+RGRVGRG   S   LLY
Sbjct: 528 FYLKRIDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRVGRGSLKSFLFLLY 587

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PL+++   RL  +K   DGF IAEEDLK R  G + G++Q+G  K  IA       ++
Sbjct: 588 KEPLTESGKFRLKTIKENIDGFKIAEEDLKLRGPGNLFGLEQTGYLKLKIADFIEDREVV 647

Query: 657 EIARKD 662
            + R++
Sbjct: 648 RLIREE 653


>gi|317125440|ref|YP_004099552.1| ATP-dependent DNA helicase RecG [Intrasporangium calvum DSM 43043]
 gi|315589528|gb|ADU48825.1| ATP-dependent DNA helicase RecG [Intrasporangium calvum DSM 43043]
          Length = 755

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 232/749 (30%), Positives = 364/749 (48%), Gaps = 85/749 (11%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L+K     N       DLL   P  ++  +    +S +     V I   ++  ++  
Sbjct: 19  AAALAK-----NKGLETVGDLLELVPRKYLPPNELTDLSRLRIGENVLIIAEVAAATTRP 73

Query: 84  LQKRRP--YKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
           ++ RR     + L D  G ++ + FF       +     G +    G+I     R+ + H
Sbjct: 74  MRNRRGKLLNVTLADEAGHQLDVTFFNAYGH--ERKLSPGVRGFFVGQIGTYGRRLQLTH 131

Query: 141 PHYIFHNSQDVNFPL------IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLL 194
           P Y   + +D    +         VYS    L+    +K++ +AL  +  L E + +++ 
Sbjct: 132 PDYELIDDEDAAGEIEYYRTHWVPVYSTTGKLNAFRMRKLVHQALDTVDHLREPLPEEVR 191

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            ++S P  AEA  ++H P      E       RL YDE    Q  L   RK  +  +G P
Sbjct: 192 ARRSLPGRAEALELVHRPPLT---ERPDRGIRRLKYDEAFVLQSILAQRRKASEALVGTP 248

Query: 255 INV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
                G +       +PF  T+ Q    + +L+++ ++  M R+LQG+VGSGKT+VAL A
Sbjct: 249 RRPRPGGLLAAFDERLPFELTEGQRLVGEVLLEELGRERPMHRLLQGEVGSGKTVVALRA 308

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-----------IVEIITGNMPQA 362
           M AAV+AGGQA ++AP  +LA QH+  I +   +  +            V ++TG+   A
Sbjct: 309 MLAAVDAGGQAAMLAPTEVLAAQHHRSISEMLGDLAMGGMLGGSDRGTKVALLTGSQSTA 368

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAP 421
            RR AL   A G A I+IGTHAL Q  +Q+  L LV+VDEQHRFGV+QR  L +K A  P
Sbjct: 369 ARRSALLDAASGAAGIVIGTHALIQKHVQFADLALVVVDEQHRFGVEQRDALREKGAAPP 428

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVV 478
           HVL+MTATPIPRT+ +T  GD++ S + E P GR PI T ++  +R   +    ER+   
Sbjct: 429 HVLVMTATPIPRTVAMTVFGDMETSTLRELPRGRSPIATHVVKADRAGWMQRTWERVAEE 488

Query: 479 LSEGKKAYWICPQI---------------EEKKESNFRSVVE------------------ 505
           +++G +AY +CP+I               E+  +       E                  
Sbjct: 489 VAKGHQAYVVCPRIGDPDPGSRLSSDSSEEDAADWEPVDWAEVDWSEDAWSSEEEPAPPP 548

Query: 506 ------------RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                          +  E      A++HGR+   +KE+ M +F  G   +L+ATTVIEV
Sbjct: 549 APELTGVYAMWHELRAKPELAGVRTAVLHGRLETDEKEATMRAFAAGEIDVLVATTVIEV 608

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS++++ +A+ FG++QLHQLRGRVGRG     C+L+   P  + +  RL ++  
Sbjct: 609 GVDVPNASVMVVVDADRFGISQLHQLRGRVGRGSVPGLCLLVTTDP-GERAVERLDLVAG 667

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQD 670
           T DGF +A  DL  R+EG++LG +QSG     + L       + ++  AR+DA  ++  D
Sbjct: 668 TTDGFELARADLHFRREGDVLGARQSGRSGSIRHLRLTRAEDEQIIADAREDAFALIDTD 727

Query: 671 PDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           PDL      +  +   L + ++A    R 
Sbjct: 728 PDLRRHPALAAAVATRLDE-DQAIWLERG 755


>gi|224534653|ref|ZP_03675225.1| ATP-dependent DNA helicase RecG [Borrelia spielmanii A14S]
 gi|224513901|gb|EEF84223.1| ATP-dependent DNA helicase RecG [Borrelia spielmanii A14S]
          Length = 686

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 215/668 (32%), Positives = 339/668 (50%), Gaps = 26/668 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR---PKI 61
           FL+     L    G+G+K    L  +            DL+ + P  + DR      P  
Sbjct: 2   FLHEFEYELKGIGGLGEKGVERLKNLQ------ILNVKDLIEFFPVKYEDRQNIQTFPDF 55

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFF 118
           S++    ++T+   +  H  F    ++  K+    +ND   EI L         L+NVF 
Sbjct: 56  SKMKSCDMMTVF-TVVGHKKFGDSSKKNLKLTARSVNDEPFEILL----FNRAFLENVFK 110

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
             +K  +  K        +    ++     +     F  I  VYSL  GL+       + 
Sbjct: 111 IDKKFYIYSKFTYNDYSGLWSCSNFDSEVFSDNPERFKKILPVYSLTEGLTSKKISLYVR 170

Query: 177 EALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           EAL       +  I K L++K S  S++EA   IH P   +  E    A++ L Y E+  
Sbjct: 171 EALEYFFKFGQTDIPKFLIEKYSLLSLSEALKEIHFPSSLEMLE---KAKKTLIYREIFL 227

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q       +  K       ++   + ++++ ++PF  T+ Q  +I +I  D++    M 
Sbjct: 228 LQFFS--RYRSSKVLFREKKHLSRDLLERVVSSLPFELTEGQRISIDEIFLDLNSSKPMN 285

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++    +EAG Q   MAP  +LA+QHY+ +        I V ++
Sbjct: 286 RLLQGDVGSGKTLVALLSGLPLIEAGYQVAFMAPTDLLARQHYDNLSNILSPLNISVTLL 345

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++ +  + +ALE I  G + +I+GTHA+F +S ++ +L  VI+DEQH+FGV QR +L 
Sbjct: 346 TGSLKKRDKEQALESIRSGTSGLIVGTHAIFYESTEFKRLAYVIIDEQHKFGVFQREELK 405

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K     +LLM+ATPIPR+  LT  GD+++S I   P GR PI T +      D+V E L
Sbjct: 406 NKGEGVDMLLMSATPIPRSFALTLFGDLEVSFIKTLPKGRLPITTYLAKHGNEDKVYEFL 465

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVM 534
           +  L +G + Y++ P I   ++   + V      L E F+  +  ++H ++    KE +M
Sbjct: 466 RKELLKGHQVYFVYPLISSSEKFELKDVNNMCLKLKEVFSEYVVDMLHSKLPADLKEEIM 525

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F +    +L+AT+VIEVGID  +A+ +++E+AE FGL+ LHQ+RGRVGR    S   L
Sbjct: 526 KNFYSKKVDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRVGRSNLQSFFFL 585

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL+     RL  +K   DGF IAEEDL+ R  G + G++Q+G  K  IA       
Sbjct: 586 LYKEPLTSAGKFRLKTIKENLDGFKIAEEDLRLRGPGNLFGLEQAGYLKLKIANFVDDRD 645

Query: 655 LLEIARKD 662
           ++ + R++
Sbjct: 646 VIVLIREE 653


>gi|219685205|ref|ZP_03540025.1| ATP-dependent DNA helicase RecG [Borrelia garinii Far04]
 gi|219673301|gb|EED30320.1| ATP-dependent DNA helicase RecG [Borrelia garinii Far04]
          Length = 686

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 212/668 (31%), Positives = 340/668 (50%), Gaps = 26/668 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR---PKI 61
           FL+     L    G+G+K    L  +            DL+ + P  + DR      P  
Sbjct: 2   FLHEFEYELKGISGLGEKGVERLKNLQ------ILNVKDLIEFFPVKYEDRQNIQTFPDC 55

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEMLKNVFF 118
           S++    + T+   +  H  F    ++  K+    +ND   EI L         L+NVF 
Sbjct: 56  SKVKSFDMTTVF-TVVGHKKFGDSSKKNLKLTARSINDEPFEILL----FNRAFLENVFR 110

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
             +K  +  K        +    ++           F  I  VYSL  GL+       + 
Sbjct: 111 IDKKFYIYSKFTYNDYSGLWSCSNFDSEVFTDSPERFKKILPVYSLTEGLTSKKISLYVR 170

Query: 177 EALSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           EAL       +  I K L++K S  S++EA   IH P   +  E    A++ L Y E+  
Sbjct: 171 EALEYFFKFGQTDIPKFLIEKYSLLSLSEALKEIHFPSSLEMLE---KAKKTLIYREIFL 227

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q       +  K       ++   + ++++ ++PF  T+ Q+ ++ +I  D+S    M 
Sbjct: 228 LQFFS--RYRSSKVLFREKKHLSRDLLERVVSSLPFELTEDQKISVDEIFSDLSSSKPMN 285

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++    +EAG Q   MAP  +LA+QHY+ +     +  I V ++
Sbjct: 286 RLLQGDVGSGKTLVALLSGLPLIEAGYQVAFMAPTDLLARQHYDNLSNILSSFNISVTLL 345

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG++ +  + +ALE I +G + +I+GTH++F +S ++ +L  VI+DEQH+FGV QR K  
Sbjct: 346 TGSLKKKDKEQALESIKNGVSGLIVGTHSIFYESTEFKRLAYVIIDEQHKFGVVQREKFK 405

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K     +LLM+ATPIPR+  LT  GD+++S I   P GR PI T +      D+V + L
Sbjct: 406 NKGEGVDILLMSATPIPRSFALTLFGDLEVSLIKTLPKGRLPITTYLAKHGNEDKVYDFL 465

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVM 534
           +  L +G + Y++ P I   ++   + V   +  L E F+  +  ++H ++    KE +M
Sbjct: 466 RKELLKGHQVYFVYPLISSSEKFELKDVNNMYLKLKEVFSEYVVDMLHSKLPSDLKEEIM 525

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F +    +L+AT+VIEVGID  +A+ +++E+AE FGL+ LHQ+RGR+GR    S   L
Sbjct: 526 KNFYSKKVDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRIGRSNLQSFFFL 585

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY  PL+     RL  +K   DGF IAEEDL+ R  G + G++Q+G  K  I+       
Sbjct: 586 LYKEPLTSAGKFRLKTIKENLDGFKIAEEDLRLRGPGNLFGLEQAGYLKLKISNFVDDRD 645

Query: 655 LLEIARKD 662
           ++ + RK+
Sbjct: 646 VIVLIRKE 653


>gi|269957066|ref|YP_003326855.1| ATP-dependent DNA helicase RecG [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305747|gb|ACZ31297.1| ATP-dependent DNA helicase RecG [Xylanimonas cellulosilytica DSM
           15894]
          Length = 749

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 211/727 (29%), Positives = 358/727 (49%), Gaps = 74/727 (10%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL+    +G +    L+K+            DLL ++P  + +      +++++   
Sbjct: 8   LQEPLTRL--LGTRTGNALAKM------GLATVDDLLRHYPRRYAEPGQLTDMAKLAIGE 59

Query: 69  IVTITGYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKT---EMLKNVFFEGRKI 123
            V++   + + +      R     + +++DG  E+TL FF +        +     G   
Sbjct: 60  HVSVLARVERTAVRSNASRNGARLEAVVSDGRHELTLTFFAKHPGALRYHEQRLVGGASG 119

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQ----DVNFPLIE-----AVYSLPTGLSVDLFKKI 174
             TG +   +    + HP Y+         D    L        +Y     +     ++ 
Sbjct: 120 VFTGVVGVYRGTRQLTHPDYLMVGEGGDVTDDESALYLASLPIPMYPATASMPTWKIQRC 179

Query: 175 IVEALSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           +   L  L    +P+ +  ++  +   PS  +A  ++H P+  ++       R RL ++E
Sbjct: 180 VRTVLDTLTEDDVPDPVPLEVRARAGLPSRYDALKLVHTPQHTQE---AYRGRHRLRFEE 236

Query: 233 LLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
               Q A+   R +   E         G +  +    +PF+ T  Q S  +D+  D++Q 
Sbjct: 237 AFVLQAAIAQRRARTAAEDATARPARPGGLLDRFDAALPFTLTSGQVSVGEDLAYDLAQP 296

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK--------- 342
             M R+LQG+VGSGKT+VAL AM   ++AGGQA ++AP  +LA QH   ++         
Sbjct: 297 RPMQRLLQGEVGSGKTVVALRAMLQVIDAGGQAALLAPTEVLAAQHARTLRTLLGPLAEG 356

Query: 343 --KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
                      V ++TG++P A R+ AL + A G+A +++GTHAL  +++Q+  L LV+V
Sbjct: 357 GLLGGAEDGTRVALLTGSLPAAARKTALLQAASGEAGVVVGTHALLSENVQFADLGLVVV 416

Query: 401 DEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           DEQHRFGV+QR  L  K    PH+L+MTATPIPRT+ +T  GD+++S +T+ PAGR  I 
Sbjct: 417 DEQHRFGVEQRDALRAKGKVAPHLLVMTATPIPRTVAMTVFGDLEVSSLTQIPAGRAGIS 476

Query: 460 TVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------------------- 497
           TV++P      +    +R++  +  G +AY +CP+I    E                   
Sbjct: 477 TVVVPAANPRWMQRTWQRVREEVDAGHRAYVVCPRIHPDDEVSGKAAATDFDDVPDFLAL 536

Query: 498 --------SNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                   +  R+V+E  + L E       ++ ++HG++   +K++ M  F  GT ++L+
Sbjct: 537 SAGDVPDRTPLRAVLEVADQLRETPALAGLAVDVLHGQLPPAEKDAAMTRFAAGTSQVLV 596

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTVIEVG+DV +A+++++ +A+ FGL+QLHQLRGRVGRG     C+L+        +  
Sbjct: 597 STTVIEVGVDVPEATVMVVFDADRFGLSQLHQLRGRVGRGSAPGLCLLVSTAEPGTPAAA 656

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKH 665
           R+  L  T DGF +A+ DL+ R EG++LG  QSG      + +      L+E AR++A  
Sbjct: 657 RVEALAETTDGFRLAQLDLELRSEGDVLGAAQSGRTSGLRLLRVVKDADLIEEARREAAG 716

Query: 666 ILTQDPD 672
           ++  D D
Sbjct: 717 VVAADVD 723


>gi|261415049|ref|YP_003248732.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371505|gb|ACX74250.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302328174|gb|ADL27375.1| ATP-dependent DNA helicase RecG [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 697

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 218/680 (32%), Positives = 349/680 (51%), Gaps = 36/680 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           LS+  G+G K    L+K      +  +   DLL+  P +++D+    KI+E+ +     +
Sbjct: 3   LSSLPGLGPKRLEKLNK------SGLSTIADLLYNIPRTYLDQTKVSKIAELHDGDRAVV 56

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G I++    +  +   +  +L DGT EI+LLFF R T  + N    G +  V+G +   
Sbjct: 57  IGIITRAGIVK-GRMSRFMAVLTDGTAEISLLFF-RGTRFIANRVKPGTRWLVSGTVGSY 114

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKIIVEALSRLPV-LP 186
           +  + +VHP     +  +     I  VY +        +    F+ +     +   + LP
Sbjct: 115 RG-LQLVHPDMQPFDEGEAFNGQILPVYPISEVCREAKMEQRFFRNLYKTIFNFPGLTLP 173

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
               ++L     F  + +    +H P   KDF+    A+  L   ELL   + ++  R++
Sbjct: 174 NACPRELTDYLHFAPVMDNLRTLHMP---KDFDSIYKAKRELKILELLPFCLRMV-KRRE 229

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            +K  G    ++          +PF  T  Q++A+  I+  ++ K +   +LQGDVG GK
Sbjct: 230 NQKIRGHERQIDLGNVMAAKARLPFQLTAGQDAALNTIIDGLNGKKQFHALLQGDVGCGK 289

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA++A+ A   AG Q  +M P  ILA+QH++ +K +     I V ++ G  P A ++ 
Sbjct: 290 TVVAMLAIMAVCGAGEQCALMVPTDILARQHFKSLKPFFDAAGIRVHLLVGATPAAEKKV 349

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            L  +  G  +++IGTHALF   + + KL LVI+DEQHRFGV QR  L  K   P +L+M
Sbjct: 350 ILGELQMGLCNVVIGTHALFSKDVFFAKLGLVIIDEQHRFGVSQREALLAKGDYPDMLVM 409

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPR+L +T  GD+ +  I EKPAGRKPIKT ++   + + + + +    + G   Y
Sbjct: 410 SATPIPRSLAMTLYGDLKVISIKEKPAGRKPIKTRLVNAAKRESMKQFICKEAAGGNLCY 469

Query: 487 WICPQI-----EEKKESNFRSVVERFNSLHEHFTS-----------SIAIIHGRMSDIDK 530
           WI  ++     +   ES+ RSV +  N +     +            +A +HG+M D  +
Sbjct: 470 WIASRVNADGSDNADESSARSVDDIVNEMRSFIAAFGHTDANIAKLKVAGVHGQMDDTQR 529

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + ++  F  G  ++L+ATTVIEVG++V  A++++I+  + FGLAQLHQLRGRVGRG + +
Sbjct: 530 DEIIKRFAAGEIQILVATTVIEVGVNVPAANLMVIDQPDRFGLAQLHQLRGRVGRGNQEA 589

Query: 591 SCILLYHP-PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
            C L+      ++ S  RLS    TEDGF IAE DLK R  G + G +QSG   F     
Sbjct: 590 WCFLMTPEGEAAETSMERLSQFAATEDGFEIAELDLKTRGAGNLEGNEQSGAWVFRWFDW 649

Query: 650 ELHDSLLEIARKDAKHILTQ 669
                L+    + A+HIL  
Sbjct: 650 IHDQELISQTLERAEHILKD 669


>gi|256372288|ref|YP_003110112.1| DEAD/DEAH box helicase domain protein [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008872|gb|ACU54439.1| DEAD/DEAH box helicase domain protein [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 720

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 231/700 (33%), Positives = 339/700 (48%), Gaps = 49/700 (7%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
            K    L  +      +     DL+ Y+P  ++DR     I++      V + G I+   
Sbjct: 22  PKVVKGLEAL------DVVTAYDLVTYYPRRYVDRTRHVMIADAVPGEEVVLIGRIASVR 75

Query: 81  SFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
               +KR    +   L D TG + L FF R+    K +      I V GK++  +    +
Sbjct: 76  VVPTRKRSMTLVEARLVDETGSVGLRFF-RQPWRAKQLGRLHGDIAVFGKVELFRKERQL 134

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLP--TGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK 196
           V+P     +        I  +Y L    G+        ++  L R   + E I + +   
Sbjct: 135 VNP---LVDPIGDRTGRIVPLYPLRDGAGIDSGAIASAVLGLLERFSPIAETIPRAVRDA 191

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG---- 252
                  EA   IH P      E    AR R+A++EL   Q+ L L+R++          
Sbjct: 192 LGLLGREEALRAIHAP---ATLEQRLEARRRIAFEELFRIQVMLGLVRRERDAHQRGFAH 248

Query: 253 --IPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
              P     G+   ++L  +PFS T +Q   + DI  DM +   M R+LQGDVG+GKTLV
Sbjct: 249 DVAPFGPGTGRRVAELLARLPFSLTAAQRRVVTDIAGDMQRDRPMHRLLQGDVGAGKTLV 308

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT----------------QNTQIIVE 353
           ALIA   A++ G QA ++AP  +LA+QH+  I                    +   I V 
Sbjct: 309 ALIAALFAIQGGHQAALLAPTEVLAEQHFRTILSLLGTAREARERTPGLFDDEVAPIEVA 368

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG +    R   +E +A G   +++GTHAL  + +    L LV+VDEQHRFGV+QR  
Sbjct: 369 LLTGTVASKRRADIVEGLARGTIDLVVGTHALLTEGVNLASLGLVVVDEQHRFGVEQRSL 428

Query: 414 LTQKATAP-----HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII-PINR 467
           L  +           L+MTATPIPRT  +T  GD+D+S I E P GR PI+T  +   + 
Sbjct: 429 LRDRHAEIAGRVADTLVMTATPIPRTAAMTVYGDLDLSVIDELPPGRTPIRTKWLRERSA 488

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL--HEHFTSSIAIIHGRM 525
             E  + L+  +  G++ Y +C  +EE +    RS  E F  L   E     + ++HGRM
Sbjct: 489 YVEAFDYLRAEVGRGRQGYVVCALVEESERLQARSAEEEFARLGNSELAGLRLGLLHGRM 548

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +K+  M +F+ G   +L+ATTVIEVG+DV +A+++IIE+A+ FG+AQLHQLRGRVGR
Sbjct: 549 PAREKDRQMAAFRAGIIDVLVATTVIEVGVDVPNATVMIIEDADRFGIAQLHQLRGRVGR 608

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
           GE  S+C LL        +  RL  L+ T DGF +AE DL  R EG +LG +QSG     
Sbjct: 609 GEHASACFLLAETDQGPTA-ARLEALERTTDGFELAEVDLVLRGEGTVLGARQSGRSDLK 667

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +A       L+E AR  A  +L  DP L      +  + L
Sbjct: 668 LASVVRDRPLVEAARHHATRLLEVDPSLREHPRLARELAL 707


>gi|312194934|ref|YP_004014995.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
 gi|311226270|gb|ADP79125.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
          Length = 785

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 220/758 (29%), Positives = 357/758 (47%), Gaps = 77/758 (10%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L  PL+    V  + +  L++             DLL + P  +  R     + ++ E 
Sbjct: 40  ELDTPLTRV--VEARMAKRLAE----RPLGLVTVADLLDHLPRRYHQRGELTNLRDLVEG 93

Query: 68  RIVTITGYISQHSSFQLQKRRPYKI-LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            + T+   + +H S Q +  R + +  + DGT ++T+ +F       +     G     +
Sbjct: 94  EVSTVHAKVVKHESRQARTGRRFDVLTVTDGTAQMTVTYFNPSRSPARR-LPAGSVAAFS 152

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFP------LIEAVYSLPTGLSVDLFKKIIVEALS 180
           GK+ + + ++ MV+P     +  D +         +  +Y     ++  +  + +   L 
Sbjct: 153 GKVDRFRKQLQMVNPETNRLDEDDESDDPDRWARALVPIYPASEHVASPVISRSVRVLLD 212

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            +  LP+ +  DLL +     +  A+ + H P    D E       RL +DE L  Q+ L
Sbjct: 213 TVAELPDPLPADLLARYRLVDLRTAYELAHRPESRGDVERAH---RRLKWDEALTLQVIL 269

Query: 241 LLMRKQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
              R+       +        I       +PF+ T+ Q      I +++++   M R+LQ
Sbjct: 270 AQRRRAISAMATVARPARPDGILAAFDGQLPFALTEGQREVGATIQEELAEPVPMHRLLQ 329

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--------- 350
           G+VGSGKT+VA+ AM A V+AGGQA ++AP   LA QHY  I+                 
Sbjct: 330 GEVGSGKTVVAVRAMLAVVDAGGQAALLAPTETLATQHYRGIRALLGGFGRAGELDETPP 389

Query: 351 --IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              + ++TG++    +R AL   A G A ++IGTHAL  + + ++ L LV+VDEQHRFGV
Sbjct: 390 ATRIALVTGSVGARAKRAALAAAADGSAGLVIGTHALLHEGVAFHDLGLVVVDEQHRFGV 449

Query: 409 QQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465
           +QR  L  +A   PHVL+MTATPIPRT+ +T  GD+++S +T+ PAGR+PI T ++    
Sbjct: 450 EQRDALRARAAQPPHVLVMTATPIPRTVAMTVFGDLEVSTLTQLPAGRQPISTFVVDAAA 509

Query: 466 --NRIDEVIERLKVVLSEGKKAYWICPQIE------------------------------ 493
                D +  R++  ++ G +AY +CP+I                               
Sbjct: 510 HPAWRDRIWGRIRDEVAAGHQAYVVCPRISSVAVGRDEEDLAAAGDDEASDAPRRAGKAT 569

Query: 494 ----EKKESNFRSVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCK 543
                    +          L             +A +HGR+    K+SVM  F  G   
Sbjct: 570 ERPVTIPAEDGSLAGAGVEELLPWLADGPLAGLRLAALHGRLPADAKDSVMTRFAAGELD 629

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ATTVIEVG+DV +A++I I +A+ FG++QLHQLRGRVGRG+    C+L         
Sbjct: 630 VLVATTVIEVGVDVPNATVIAIMDADRFGVSQLHQLRGRVGRGQGAGVCLLHTEVDGDTP 689

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLEIARKD 662
           +  RL+ +  T DG  +A  DL QRKEG++LG  QSG      + +    + L+  AR++
Sbjct: 690 ATQRLANVAATTDGAELARLDLGQRKEGDVLGASQSGRARGVRLLELLKDERLILDAREE 749

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A  ++  DP+L +  G   RI + L   +   +F+  G
Sbjct: 750 AARLVAADPELVAHPGLGRRIAIALD--DRPVEFLEKG 785


>gi|225023458|ref|ZP_03712650.1| hypothetical protein EIKCOROL_00316 [Eikenella corrodens ATCC
           23834]
 gi|224943807|gb|EEG25016.1| hypothetical protein EIKCOROL_00316 [Eikenella corrodens ATCC
           23834]
          Length = 533

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 213/526 (40%), Positives = 322/526 (61%), Gaps = 8/526 (1%)

Query: 164 TGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----E 219
           +GLS    ++II +AL +   L + + + LL +   P +AE+ +++H P          +
Sbjct: 2   SGLSQPTLRRIIRQALEQTD-LADTLPESLLAQLKLPPLAESLHLLHAPPPEYSIGQLSD 60

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            + PA +RL +DELLA Q+++ L R        +P+  +G +A+ +++++PF+ T +Q+ 
Sbjct: 61  GSLPAWQRLKFDELLAQQLSMRLARAHRLSGQAMPLVGDGSLAKTLVQSLPFALTAAQDR 120

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            + +I QD++Q + M R+LQGDVGSGKT+VA ++  AA+EAG Q  +MAP  ILA+QH+ 
Sbjct: 121 VLAEIRQDLAQPHPMHRLLQGDVGSGKTIVAALSALAAIEAGAQVAVMAPTEILAEQHHI 180

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +++ +   I V  ++G++ +  + +A   +A G+  + +GTHALFQD + +  L LVI
Sbjct: 181 KFRQWLEPLGISVAWLSGSLKKKEKDQAKAALADGRIRLAVGTHALFQDDVSFQNLGLVI 240

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++   D+D+S I E P GR PIK
Sbjct: 241 VDEQHRFGVAQRLALKNKGCDVHQLMMSATPIPRTLAMSFFADLDVSIIDELPPGRTPIK 300

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T ++   R  EV   +     +G++AYW+CP IEE +    ++  +    L       +I
Sbjct: 301 TRLVNNIRRHEVEGFVLATCKKGQQAYWVCPLIEESEALQLQTATDTLAELQAALPELTI 360

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++HGRM   +K +VM  F  G   +L+ATTVIEVG+DV +A++++IE+AE  GL+QLHQ
Sbjct: 361 GLVHGRMKSAEKATVMAEFAAGRIHVLVATTVIEVGVDVPNAALMVIEHAERMGLSQLHQ 420

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG  +SSC+LL+  PL   +  RL V+    DGF IA +DL  R  GE LG +Q
Sbjct: 421 LRGRVGRGAAVSSCVLLFAEPLGDTAKARLKVIYENTDGFEIARQDLNIRGPGEFLGARQ 480

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           SG+P    A  E    LLE AR+ A  ++ + PD+  V     R L
Sbjct: 481 SGLPLLRFADLEQDLPLLEAARRIAPELIARHPDI--VEKHLERWL 524


>gi|297571644|ref|YP_003697418.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931991|gb|ADH92799.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 741

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 224/723 (30%), Positives = 348/723 (48%), Gaps = 63/723 (8%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L  PL     VG + +  L+K+            DLL + P     R     I  + E 
Sbjct: 21  ALSRPLDRL--VGARSAKALAKL------GLETVEDLLNHVPFRVARRGELLPIESVREG 72

Query: 68  RIVTITGYISQHSSFQLQKRRPYK--ILLNDGTGEITLLFFY---RKTEMLKNVFFEGRK 122
             VT+   +   SS  +  R  +   + ++DG  ++ L FF    R     +N    G  
Sbjct: 73  DSVTVVARVMDSSSRPMNNRAGFILNVTISDGAHDLDLTFFAKHKRPLAYHENALCPGTI 132

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQ----DVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            T +G I + + R+ + HP Y     +    +        +Y     +     ++ +   
Sbjct: 133 ATFSGTISQYRGRLQLTHPEYEVVEDESEIDEAKIARPIPIYHAMAKVPSWQIERAVGTV 192

Query: 179 LSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           L  L    +P+ +  +  +K   PS  EAF+ +H P+   D E  S AR R A++E    
Sbjct: 193 LGTLSPADVPDLLPAEYREKYGLPSRFEAFHAVHQPQ---DVEEWSRARLRFAHEEAFVL 249

Query: 237 QIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q  L     +               +A  +   +PF+ T SQ      I + +S    M 
Sbjct: 250 QTVLAQRAAEVSTTQAPSCPPRLDGVAAGLDARLPFTLTDSQVEVGARISEALSGTLPMR 309

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-----------Y 344
            +LQGDVGSGKT+VAL AM   V++G QAV++AP  +LAQQH+  I              
Sbjct: 310 CLLQGDVGSGKTIVALRAMLQVVDSGRQAVLLAPTEVLAQQHFSTISALLGELASAGELG 369

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
             +    VE++TG++  A RR+ L  +A G   I++GTHAL  D +Q   L LV+VDEQH
Sbjct: 370 APSCATRVELLTGSLGMAQRRRTLAHLASGAPLIVVGTHALLGDQVQLPSLGLVVVDEQH 429

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           RFGV QR +L   A   H+L+MTATPIPRT+ +T  GD+D++ +  +   R  + T ++P
Sbjct: 430 RFGVDQRDRL---AHGAHLLVMTATPIPRTVAMTVFGDLDVAVLGNR--ERSAMSTSVVP 484

Query: 465 ---INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------------------RSV 503
                 +  V +R +  +  G + + +CP+I  K+  +                    SV
Sbjct: 485 AFNDRWMARVWQRAREEIDSGGRVFVVCPRISAKEADDEAVLVDLPADLDQPEMANVESV 544

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            ER  +L      +I ++HG+MS  DK +VM+    G   L++ATTVIEVG+D+ DA+++
Sbjct: 545 SERLRNLPVFAGVAIGVVHGQMSAADKNAVMNDMAAGRVHLVVATTVIEVGVDIPDATVM 604

Query: 564 IIENAEHFGLAQLHQLRGRVGRG--EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
           +I +AE FGL+QLHQLRGRVGRG   +   C+ + +      +  R+     T DGF +A
Sbjct: 605 VIMDAERFGLSQLHQLRGRVGRGNKNKPGLCLAVTNAAPGTLAAQRVDAFAGTTDGFALA 664

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL-LEIARKDAKHILTQDPDLTSVRGQS 680
           E D+  R  G++LG  QSG+   L     + D L +E AR  A+ ++  DP L + R  +
Sbjct: 665 EADVALRSVGDVLGASQSGIRSSLRFVSVVKDKLAIEQARAGARELVGSDPQLRNHRALA 724

Query: 681 IRI 683
           + +
Sbjct: 725 VAV 727


>gi|332525200|ref|ZP_08401375.1| ATP-dependent DNA helicase RecG [Rubrivivax benzoatilyticus JA2]
 gi|332108484|gb|EGJ09708.1| ATP-dependent DNA helicase RecG [Rubrivivax benzoatilyticus JA2]
          Length = 679

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 228/658 (34%), Positives = 355/658 (53%), Gaps = 16/658 (2%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN 95
               R IDL  + P  + D      ++ + +     + G + +    +++ RR   + L 
Sbjct: 20  LGLLRDIDLALHLPMRYEDETRIEPVAALHDGDTAQVEG-VVRSCQVEIRSRRQLVVRLA 78

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL 155
           D +GE+TL F +      K     G ++ V G+++       MVHP     +        
Sbjct: 79  DDSGELTLRFLHFYPSTQKQ-LAVGSRVRVRGEVRVGFLGREMVHPTVKRVDEHTPLAAS 137

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
           +  VY     L     +K +   LSR P+  + +    +     P + EA  ++H+P   
Sbjct: 138 LTPVYPASAQLPQAYLRKAVAAGLSRAPL--DEVLPPGVVPPGLPPLREALRLLHHPPPG 195

Query: 216 ----KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
                  + + PA +RL +DELLA Q++ L  R +  +     +  +  +  ++   +PF
Sbjct: 196 IAMGALEDHSHPAWQRLKFDELLAQQLSQLQARLERSRLAAPALR-DSTLPARLRTVLPF 254

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
           + T +QE  + +I  D++    M R+LQGDVGSGKT+VA +A A A+ +G Q  +MAP  
Sbjct: 255 TLTAAQERVVAEIAADLALAQPMHRLLQGDVGSGKTVVAALAAATAIGSGWQCALMAPTE 314

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+QH++ +  +     + V  +TG+     R   L +IA GQA +++GTHA+ Q+ + 
Sbjct: 315 ILAEQHFKKLVDWLLPLGLEVAWLTGSRKGKQRAAMLAKIASGQAALVVGTHAVIQEDVV 374

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQ----KATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           + +L L +VDEQHRFGV QRL L +    +A  PH+L+M+ATPIPRTL +T   D+ +S 
Sbjct: 375 FARLGLAVVDEQHRFGVAQRLALRRKLELQALEPHLLMMSATPIPRTLAMTYFADLAVST 434

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P GR P+ T +   ++ + V+E+++  ++ G++ YW+CP +EE +  + ++     
Sbjct: 435 IDELPPGRTPVVTKVFADDKREMVVEKIRDEVARGRQVYWVCPLVEESEHIDLQNATATH 494

Query: 508 NSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             L E     S+ ++HGRM+  DK + M  F  G  +LL+ATTVIEVG+DV +AS+++IE
Sbjct: 495 AQLSEALPGVSVGLLHGRMAAADKAATMAEFSAGRMQLLVATTVIEVGVDVPNASLMVIE 554

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           +AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL  +  T DGF IA  DL 
Sbjct: 555 HAERFGLAQLHQLRGRVGRGAVASVCVLLYTAPLSPTGKARLRAMAETTDGFEIARRDLD 614

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
            R  GE +G +QSG      A     D+LLE AR+ A  +L + P   + +    R L
Sbjct: 615 IRGPGEFMGSRQSGDALLRFADLAEDDALLERARELAPKLLREQP--AAAKAHVQRWL 670


>gi|254751166|ref|ZP_05203205.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Vollum]
          Length = 564

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 201/547 (36%), Positives = 322/547 (58%), Gaps = 8/547 (1%)

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSI 202
             H    V    +E VYS+   L+V   ++ I +AL      + E +   LL +      
Sbjct: 11  ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEVLPDGLLSRYKLLPR 70

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIGIPINVEGKI 261
            EA   +H P   +D      AR R  Y+E    Q+ +  L + + +   G    +  + 
Sbjct: 71  YEALRALHFPTGQEDL---KQARRRFVYEEFFLFQLKMQTLRKMERENSKGTKKEIPSEE 127

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            Q+ +  +PF  T +Q   + +I++DM+   RM R+LQGDVGSGKT+VA I + AA  A 
Sbjct: 128 LQEFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAH 187

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  +M P  ILA+QHY+ + +   +  + VE++T ++    RR+ L ++  G+  I++G
Sbjct: 188 YQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVRRREILAKLEQGEIDILVG 247

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           THAL QD + +++L LVI DEQHRFGV QR  L +K  +P VL MTATPIPRTL +T+ G
Sbjct: 248 THALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAFG 307

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           ++D+S I E PAGRK I+T     + +D V+  ++  +++G++AY ICP IEE ++ + +
Sbjct: 308 EMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEINKGRQAYVICPLIEESEKLDVQ 367

Query: 502 SVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           + ++  + L  H+     + ++HGR+S  +KE +M  F     ++L++TTV+EVG++V +
Sbjct: 368 NAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPN 427

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A++++I +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+    R+ ++  T DGF+
Sbjct: 428 ATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFV 486

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
           ++E+DL+ R  G+  G KQSG+P+F +A        LE AR+DA  ++  +    + +  
Sbjct: 487 LSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAALLVDSEAFWHNDQYA 546

Query: 680 SIRILLY 686
           S+R  L 
Sbjct: 547 SLRTYLD 553


>gi|297559189|ref|YP_003678163.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843637|gb|ADH65657.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 747

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 231/730 (31%), Positives = 361/730 (49%), Gaps = 68/730 (9%)

Query: 12  PLST--FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
           PLS    RG   K +  L++       +     DLL Y+P  +  R     ++ + E   
Sbjct: 19  PLSRGPLRG---KTAKALAE-----KLDLHTLGDLLRYYPRRYDRRGDLTDLAALREGEE 70

Query: 70  VTITGYIS----QHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           VT+   +     +    +  +RR    +  + DGTG + L FF R     +     GR  
Sbjct: 71  VTVQARVLDAKRRTVPARQGRRRMDMMEATVTDGTGRLHLTFFNRG-SYHQGALVPGRLA 129

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-------IEAVYSLPTGLSVDLFKKIIV 176
             +G++   K R  + HP Y   +               +  VY    GL      + + 
Sbjct: 130 MFSGRVSTFKGRRQLDHPQYELLDEDGHEGERARAYAEELIPVYPAVKGLDSTTIARTVD 189

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
             L+ +  LP+ +  +L +++    +A+A   IH P +  D      AR RL +DE    
Sbjct: 190 IVLADVDSLPDPLPPELRERRGLLGVADALRRIHRPAEWSDV---GAARRRLKWDEAFVL 246

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q+AL   R + +     P     G +       +PF+ T+ Q    + + + +   + M 
Sbjct: 247 QLALAQRRHRAEDLPAKPRPGAVGGLLDAFDAQLPFTLTEGQREVGERLAERLDAAHPMH 306

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI----- 350
            +LQGDVG+GKTLVAL AM   V++GGQAV++AP  +LAQQH+  I              
Sbjct: 307 CLLQGDVGAGKTLVALRAMLRVVDSGGQAVMLAPTEVLAQQHHRSISAMLGALGRAGQID 366

Query: 351 ------IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                  V ++TG+M  A RR+AL   A G A I++GTHAL Q+ + +  L LV+VDEQH
Sbjct: 367 GAENATRVALLTGSMNAAARREALLDAASGAAGIVVGTHALLQEHVSFADLGLVVVDEQH 426

Query: 405 RFGVQQRLKLTQKAT--APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           RFGV+QR  L +KA    PHVL+MTATPIPRT+ +T  GD+D+  +T+ P GR P+ T +
Sbjct: 427 RFGVEQRDALREKAVDGRPHVLVMTATPIPRTVAMTVYGDLDVVALTQLPTGRAPVSTHV 486

Query: 463 IPINR----IDEVIERLKVVLSEGKKAYWICPQI------------------EEKKESNF 500
           +P +     +    ER++     G +A+ +CP+I                  E       
Sbjct: 487 VPASEKPHFLARAWERIREEAGGGHQAFVVCPRIGDDAKEEAEEEVGAGDGEEAAGARPP 546

Query: 501 RSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            +V++    L E   S   + ++HGRM+  DK++VM  F  G    +++TTVIEVG+DV 
Sbjct: 547 LAVLDVAARLREGPLSELRVEVLHGRMAPDDKDAVMRRFSAGDTDAVVSTTVIEVGVDVP 606

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A++++I +A+ FG++QLHQLRGRVGRG+    C+L+        +  RL+ +  T DGF
Sbjct: 607 NATVMVIMDADRFGVSQLHQLRGRVGRGQLPGLCLLVTDAEEGSPARERLAAVAATTDGF 666

Query: 619 LIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTS-- 675
            ++  DL+ R+EG++LG  QSG      +      + L+  AR++A   +  DP LT   
Sbjct: 667 ELSRVDLEMRREGDVLGDSQSGARSSLRMLTLLKDEELIGEAREEATAYVAADPGLTGHP 726

Query: 676 VRGQSIRILL 685
              Q++  LL
Sbjct: 727 PLAQALETLL 736


>gi|325068483|ref|ZP_08127156.1| ATP-dependent DNA helicase RecG [Actinomyces oris K20]
          Length = 752

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 221/753 (29%), Positives = 348/753 (46%), Gaps = 86/753 (11%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           VGK+ +  L+K             DLL   P  +        +  + E    TI   + +
Sbjct: 5   VGKRTAAQLAK------QGVETGADLLRLLPRRYDTWGELTDMRTLVEGEQATIQAQVVR 58

Query: 79  HSSFQLQKRR---PYKILLNDGTGEITLLFFYRKTEMLKN--VFFEGRKITVTGKIKKLK 133
            SS + +  R     +  + DG   + L+ F    +M         G  + ++GK+   +
Sbjct: 59  ASSRRTRSGRVPALMEATVTDGASTMDLVQFGAAGQMRTRAAQLAPGTTVLLSGKVGLHR 118

Query: 134 NRIIMVHPHYIFHNSQDVN-----FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLP 186
            R  + +P     +  D             +Y     L   L  K +   L +L    + 
Sbjct: 119 GRKQLSNPRLYVLDELDEGEREALLARPMPIYPGTEALPSWLVAKAVRSVLDQLESGDVA 178

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + + ++L ++        A+  +H P   +D      AR+RL ++E L  Q+AL   R  
Sbjct: 179 DPLPEELRREAGLVDAYTAYRWVHRP---EDSGQWKAARKRLRHEEALILQVALAQRRAH 235

Query: 247 FKKE----IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +             EG +   +   +P+  T  Q+   ++I  D+++   M R+LQGDV
Sbjct: 236 HEATRTAVAWPVPETEGSLRADLDARLPYDLTAGQKRVGEEISADLARTVPMQRLLQGDV 295

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK-----------KYTQNTQII 351
           GSGKTLVAL AM   V  GGQA ++AP  +LA QH+  ++                    
Sbjct: 296 GSGKTLVALRAMLQVVGGGGQAALLAPTEVLAAQHHSSLEVVLGPMARLGMLGGAEHATR 355

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V ++TG+ P A RR+ L  +A G+  I++GTHAL  D++Q   L LV+VDEQHRFGV QR
Sbjct: 356 VHLLTGSTPAAQRRRILTELAAGEPAIVVGTHALLSDTVQIPFLGLVVVDEQHRFGVAQR 415

Query: 412 LKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
             L +          ++  PH+L+MTATPIPRT+ +T  GD+  S + E PAGR  + T 
Sbjct: 416 DALRERGGLTDPATGQSHTPHLLVMTATPIPRTIAMTVFGDLATSVLDELPAGRSAVPTH 475

Query: 462 IIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------------------ 500
           ++P +R   ++ +  R    ++ G + Y +CP+IE   E                     
Sbjct: 476 LVPWSRTSWVEGIWRRAAKEVASGGRVYVVCPRIEVDDEPRQTPMDGATTVETDDGPKQE 535

Query: 501 ------------------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                                  R           + ++ GRMS  DK + M  F +G  
Sbjct: 536 ALAEEGDGSHPDRPLAAVEEWRRRLEGEPALEGIGVGVLTGRMSSDDKAASMADFASGAT 595

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L++TTVIEVG+DV +AS+++I +AE FGL+QLHQLRGRVGRG   S C+ +    +  
Sbjct: 596 PVLVSTTVIEVGVDVPEASMMVILDAERFGLSQLHQLRGRVGRGSRPSLCVAVTGAEVGS 655

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARK 661
            ++ RL    +T DGF +AE DL+ R EG++LG  QSG      + +      L+  AR+
Sbjct: 656 TAFHRLKAFASTTDGFALAEADLELRSEGDVLGASQSGHASGLDLLRVTRDARLIATARR 715

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
            A+ I+  DP L+  R  +  I+  L + ++AF
Sbjct: 716 QAERIVAADPQLSEHRALAAAIVERLDEESQAF 748


>gi|315925837|ref|ZP_07922044.1| DNA helicase RecG [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315620946|gb|EFV00920.1| DNA helicase RecG [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 679

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 214/669 (31%), Positives = 342/669 (51%), Gaps = 28/669 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +    GVG K    L+      +       DLL + P  +IDR  R   +    E 
Sbjct: 3   LDDRIRDVPGVGPKRERALN------DGGIFTVEDLLAHFPKQYIDRSRRGTFA-APSET 55

Query: 69  IVTITGYISQHSSFQLQKRR----PYKILLNDG-TGEITLLFFYRKTEMLKNVFFEGRKI 123
            VTI   +S+  + +  +R        +  +DG TG+IT    +     L   F E  + 
Sbjct: 56  AVTIEACVSRKGTVRRIRRNLSLFGLSVTTDDGVTGQIT----FFNQPWLAEHFHEEARY 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
              G+I + K +  M +P ++    +  NF  +  VY+   G+S +  +K+I + L+   
Sbjct: 112 YFFGRITEKKGKCGMANPQFV-PTDKPGNFFELTPVYAPVGGVSGETLRKLIAKVLAEDI 170

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + + + + L + +  P+ A    ++H P+   +    +  R RL ++E L   +   L+
Sbjct: 171 AMSDPLPETLRKDRCLPNSAACLKLLHCPQTMAEV---AAGRTRLKFEEALKLNLG--LL 225

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + +      +        +  R +PF  T+ Q   + +I  D+     M R++QGDVG
Sbjct: 226 RSRGETRRSSVVLAHPASLSRFERGLPFLLTEGQRRVLAEIAADLQSGRIMNRLVQGDVG 285

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT+VA+         G Q   MAP  ILA+QH    + Y     I V ++TG+M  + 
Sbjct: 286 SGKTVVAVACAYLMALGGYQCAYMAPTEILAEQHARNFEAYLAPYGISVTLVTGSMKASE 345

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           R  AL  IA+G A +IIGTHALFQ  + YY L +VI DEQHRFGV+QR  L  K   PH 
Sbjct: 346 RENALTHIANGDAQVIIGTHALFQKDMAYYNLGMVITDEQHRFGVRQRGLLALKGERPHT 405

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+M+ATPIPRTL L   GD+DIS I   PAGRK +KT       + +++  + V ++ G 
Sbjct: 406 LVMSATPIPRTLALVLYGDLDISVIDTMPAGRKKVKTYFYTEKALRKILGMMAVEMAAGH 465

Query: 484 KAYWICPQIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + + +CP +E  +E     + ++V    +  ++     +A +HG+M   +K +V+  F  
Sbjct: 466 QGFIVCPFVENAEEMAEVRDTQTVCREVDRYYKGLY-RVACLHGKMKPDEKAAVVVDFSA 524

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G    L+AT++IEVGIDV + +++++ +A+ FGL+QLHQLRGRVGRG+  + C L+ +  
Sbjct: 525 GKIDCLVATSIIEVGIDVPNVTMMVVMSADRFGLSQLHQLRGRVGRGDAQAYCFLVSNA- 583

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           +++ +  R+ V+ N  +G  IAE D K R  G+  G +Q G+P      P    +LL   
Sbjct: 584 VNEKTIARMKVIVNHHNGQEIAEADFKLRGPGDAFGTRQHGLPALSALDPAADAALLAET 643

Query: 660 RKDAKHILT 668
           R  A+ +L 
Sbjct: 644 RAIAEQLLA 652


>gi|225552492|ref|ZP_03773432.1| ATP-dependent DNA helicase RecG [Borrelia sp. SV1]
 gi|225371490|gb|EEH00920.1| ATP-dependent DNA helicase RecG [Borrelia sp. SV1]
          Length = 686

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 210/666 (31%), Positives = 340/666 (51%), Gaps = 22/666 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR---PKI 61
           FL+          G+G+K    L+ +            DL+ + P  + DR      P  
Sbjct: 2   FLHEFEYEFKGIGGLGEKGVERLNNLQ------IFNVKDLIEFFPVKYEDRQNIQTFPDF 55

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEG 120
           S++    ++T+   +  H  F    ++  K+ +     E   +L F R    L+NVF   
Sbjct: 56  SKVKSCDMMTVF-TVLGHKKFGDSSKKNLKLTVKSINEEPFEILLFNR--AFLENVFKID 112

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +K  +  K        +    ++    ++ +   F  I  VYSL  GL+       + EA
Sbjct: 113 KKFYIYSKFTYNDYSGLWSCSNFDSEVYSDKPERFKKILPVYSLTEGLTSKKISLYVKEA 172

Query: 179 LSRLPVLPEW-IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L       +  I + L++K S  S+++A   IH P   +  E    A++ L Y E+   Q
Sbjct: 173 LEYFFKFGQTDIPRFLIEKYSLLSLSDALKEIHFPSSLEMLE---KAKKTLIYREIFLLQ 229

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
                  +  K       ++   + +K++ ++PF  T  Q+ +I +I  D++    M R+
Sbjct: 230 FFS--RYRSSKILFREKKDLSKDLLEKVVSSLPFELTGDQKISIDEIFFDLNSSKPMNRL 287

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVAL++    +EAG Q   MAP  +LA+QHY+ +        I + ++TG
Sbjct: 288 LQGDVGSGKTLVALLSGLPLIEAGYQVAFMAPTDLLARQHYDNLSNILAPFNISMTLLTG 347

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++ +  + + LE I +G + +I+GTHA+F +S ++ +L  VI+DEQH+FGV QR +L  K
Sbjct: 348 SLRKRDKEQTLESIRNGTSGLIVGTHAIFYESTEFKRLAYVIIDEQHKFGVVQREELKNK 407

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                +LLM+ATPIPR+  LT  GD+++S I   P GR PI T +      D+V E L+ 
Sbjct: 408 GEGVDMLLMSATPIPRSFALTLFGDLEVSFIKTLPKGRLPITTYLARHGNEDKVYEFLRK 467

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA-IIHGRMSDIDKESVMDS 536
            L +G + Y++ P I   ++   + V      L E F   +  ++H ++    KE +M +
Sbjct: 468 ELLKGHQVYFVYPLISSSEKFELKDVNNMCLKLKEVFGEYVVDMLHSKLPSDLKEEIMKN 527

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +    +L+AT+VIEVGID  +A+ +++E+AE FGL+ LHQ+RGRVGR    S   LLY
Sbjct: 528 FYSKKVDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRVGRSNLQSFFFLLY 587

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PL+     RL  +K   DGF IAEEDL+ R  G + G++Q+G  K  IA       ++
Sbjct: 588 KEPLTSAGKFRLKTIKENLDGFKIAEEDLRLRGPGNLFGLEQAGYLKLKIANFVNDREII 647

Query: 657 EIARKD 662
            + R++
Sbjct: 648 VLIREE 653


>gi|149925181|ref|ZP_01913479.1| ATP-dependent DNA helicase RecG [Plesiocystis pacifica SIR-1]
 gi|149813951|gb|EDM73598.1| ATP-dependent DNA helicase RecG [Plesiocystis pacifica SIR-1]
          Length = 814

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 240/701 (34%), Positives = 363/701 (51%), Gaps = 38/701 (5%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           A      GVGK+ +  L+              DL +  P  + DR     +SE+ E    
Sbjct: 115 ASAQVLSGVGKRTAEKLA------ARGLESIEDLAYLLPLGYEDRRQTTLLSEVEEGASA 168

Query: 71  TITGYISQHSSFQLQKR-----RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
            I G I          R     R  ++  N     +   +F+R   M + V   G ++ +
Sbjct: 169 VIHGVIRSFRQGWYSGRYSATMRIEQVQPNGAHLGLEARWFHRVGGMSQRV-TTGEEVLL 227

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRL-- 182
            G +K+ + ++ MVHP  +     D    L I   Y +  G+      ++   A+ RL  
Sbjct: 228 AGVVKRFRGKLSMVHPDIL-----DAQLGLGIATRYPVVEGVGQRTLVRLCKAAVERLRA 282

Query: 183 ----PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD-------FEWTSPARERLAYD 231
                +L + +  +L+++       +A   +H P +  D          +SPA  RLA+D
Sbjct: 283 AREQGILHDPLPPELVERHQLIDQLDAVAWLHEPPQDLDEVQLEALIRRSSPAHRRLAFD 342

Query: 232 ELLAGQIALLLMRKQFKKEIG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
           E    Q+ALL  R  ++       P+       +++   +P+ PT +Q   I DI  D+S
Sbjct: 343 EFFFLQLALLRQRGTYRATPCALPPLAEGSFDRERLRACLPWEPTGAQWRVIDDIEGDLS 402

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           +   MLR+LQGDVGSGKT VA  A  A ++AG QA IMAP  ILA+QH   ++ + +   
Sbjct: 403 RHKPMLRLLQGDVGSGKTAVAFAAALAVIDAGAQAAIMAPTEILAEQHMRGMQVWCEKAG 462

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + + ++TG+ P+A R   L  +  G+  +++GTHAL    +++  L LVIVDEQHRFGV+
Sbjct: 463 VRIALLTGSTPRAQRTSLLALLGAGEIDLLVGTHALLVGDVEFASLALVIVDEQHRFGVE 522

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-I 468
           QR  L  K  APH+L+MTATPIPR+L LT+ G++D+S I E P GR    T +    R +
Sbjct: 523 QRGALRAKGEAPHLLVMTATPIPRSLALTAFGELDVSIIDELPPGRIAPTTQVFAGGRSL 582

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSD 527
               + L   +  G KAY +CP +E  +      V     +L +      +A++HGRM  
Sbjct: 583 GRARKLLAERVRAGDKAYVVCPLVEASEAVAASDVEATAAALRKLLPKHEVAVVHGRMVS 642

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            DK++VM+ F++G  ++L+ATTVIEVG+DV DA  I+IE+AE FGLAQLHQLRGRVGR  
Sbjct: 643 RDKDAVMERFRSGEVRVLVATTVIEVGVDVPDARAILIEHAERFGLAQLHQLRGRVGRSA 702

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             S C+L      + ++  RL VL+ + DGF++AE DL+ R  GE+ G +QSG+P+   A
Sbjct: 703 GHSLCLLHTASDPASDAGKRLEVLEGSGDGFVVAERDLELRGPGEVFGTRQSGVPRLRFA 762

Query: 648 QPELHD-SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
                   +L  AR+ A  I+  DP L      ++R+ L L
Sbjct: 763 SFSGEGMKMLIAAREAAMAIIEADPLLR--EHPTLRLELQL 801


>gi|203284487|ref|YP_002222227.1| DNA recombinase [Borrelia duttonii Ly]
 gi|203288021|ref|YP_002223036.1| DNA recombinase [Borrelia recurrentis A1]
 gi|201083930|gb|ACH93521.1| DNA recombinase [Borrelia duttonii Ly]
 gi|201085241|gb|ACH94815.1| DNA recombinase [Borrelia recurrentis A1]
          Length = 687

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 220/666 (33%), Positives = 338/666 (50%), Gaps = 22/666 (3%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHY---RPKI 61
           FL+     L    G+G +    L+      N   T   +L+ Y+P  + DR      P  
Sbjct: 2   FLHEFQYGLQGINGLGSRGIDRLN------NIRITNVKELIEYYPKKYEDRKNMAAFPDP 55

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEI-TLLFFYRKTEMLKNVFFEG 120
            ++    ++TI   + +H  F    +R  KI+      E+  +L F R    L+ +F  G
Sbjct: 56  LQVRICELMTIF-TVIEHRDFGNTFKRNLKIIGRSENSELFEILLFNRS--FLERIFKIG 112

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +K  +  +        +    ++     +   V F  I  VYSL  GLS       +  A
Sbjct: 113 QKFYIYARFSYNDYTKMWSCSNFDSEIFSYNPVKFKKIMPVYSLSEGLSSKKISSYVKGA 172

Query: 179 LSRLPVL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L+         I K L+ K S  S+ EA N IH P      E    A++ L Y E+   Q
Sbjct: 173 LAYFVKFGQSDIPKFLINKYSLLSLHEALNEIHFPSS---LEMLRRAKKTLVYREIFLLQ 229

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
                  K ++  +    N+   + ++I+  + F  T+ Q+ AI +I+ D+     M R+
Sbjct: 230 FFS--RGKSYRVFLRAEKNLSNDLLKQIISKLSFELTRDQKIAITEIINDLKNNKPMNRL 287

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           LQGDVGSGKTLVA ++    +EAG Q   M P  +LA+QHY  +    ++  I V ++TG
Sbjct: 288 LQGDVGSGKTLVAFLSSIPLIEAGYQVAFMVPTDLLARQHYNSLTNILKDFDISVVLLTG 347

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++ +  R + LE+I  G   ++IGTHA+F    ++  L  VI+DEQH+FGV+QR +L  K
Sbjct: 348 SLKKKDRDEVLEKIQSGICSLVIGTHAIFSQGTKFKNLAYVIIDEQHKFGVEQREELRNK 407

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                VLLM+ATPIPR+L LT  GD+++S I   P GR P+ T +      ++V E LK 
Sbjct: 408 GEEVDVLLMSATPIPRSLALTLFGDLEVSLIKRGPEGRLPVTTYLAKHGNEEKVYEFLKN 467

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
            L +G + Y++ P I   ++ N +       +L   F   S+A+IH ++    KE +M +
Sbjct: 468 ELGKGHQVYFVYPLISSSEKFNLKDATSMCLNLQNIFVEYSVAMIHSKLESYVKEEIMHN 527

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F      +L+AT+VIEVGID  +A+ +++E+AE FGL+ LHQ+RGRVGR    S   LLY
Sbjct: 528 FYLKKIDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRVGRSNLKSFFFLLY 587

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PL++    RL  +K   DGF IAEEDLK R  G + G++QSG     I+    H  ++
Sbjct: 588 KEPLTEAGKFRLKTIKENTDGFKIAEEDLKLRGPGNLFGLEQSGYFNLRISDFVEHKEII 647

Query: 657 EIARKD 662
            + R +
Sbjct: 648 GLMRAE 653


>gi|114775351|ref|ZP_01450919.1| ATP-dependent DNA helicase RecG [Mariprofundus ferrooxydans PV-1]
 gi|114553462|gb|EAU55843.1| ATP-dependent DNA helicase RecG [Mariprofundus ferrooxydans PV-1]
          Length = 671

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 228/651 (35%), Positives = 352/651 (54%), Gaps = 22/651 (3%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PLST +GVG      L +       +     DLL + P  +ID      I+++ +     
Sbjct: 9   PLSTVKGVGPALEKRLHQ------RDIRTLGDLLLHLPKDYIDDRQLSPIAQLCDGVSAR 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G I    +    K+R   ILL D +G I L FF+    M      EGR+I V G  ++
Sbjct: 63  IQGRILTKEARGYGKKRQVIILLADDSGRIRLNFFHSGYMMSDARLSEGREIAVRGVAER 122

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
            + +  M HP +    +     P  + VY    GLS      +I +AL+ LPV       
Sbjct: 123 WQGQWQMTHPEWCVSEAFQ---PGYQPVYRALAGLSGKRIATLIRQALTLLPVAASSPLD 179

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
            +L   + P + +A   +H P    D E  + A  RL  +EL+   + L LMR++ ++  
Sbjct: 180 AVLAATASP-LRQALRELHQPHDL-DSEALNRAAVRLKCEELI---LYLQLMREKKRQAD 234

Query: 252 GIPINVEGKIAQKILRN-IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
              ++++ + + +++   +PF  T +Q SA  DI  D++   RM R+LQGDVG+GKT VA
Sbjct: 235 CPAVSLQAETSSRLMHQSLPFELTDAQASAWSDISTDLNSGKRMHRLLQGDVGAGKTWVA 294

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +AM  A   G QA ++AP  +LA+QH E ++         ++++TG+     RR+ L  
Sbjct: 295 ALAMIKAAGCGYQAALLAPTEVLAKQHAETLQALFAPLGFTIKLLTGSTRAKERRELLAE 354

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL----TQKATAPHVLLM 426
           +  G+  +I+GTHAL  + + +  L L +VDEQHRFGV+QR  L         A H+L M
Sbjct: 355 LGSGELKLIVGTHALLSEDVVFNHLALALVDEQHRFGVRQRWGLADKKRDGHQAVHLLGM 414

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L   GD+D+S +   P GRKP++T +I  +++  +I  ++ +L    + Y
Sbjct: 415 TATPIPRTLALALYGDMDLSIMRGMPPGRKPVETRVIASDKMKSLIAGMQRILDAEGRIY 474

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           WI P+I+E  + +  SV +R   L  +F  +++  +HGRM   DK   +++F  G CK+L
Sbjct: 475 WIVPRIDE--DEDGLSVDQRVELLKRYFPDANVLGLHGRMKSGDKNGALEAFTTGVCKML 532

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           ++TTV+EVG++V +A +I+IE AE +GLAQLHQLRGRVGR  E   C+L+     S+ S 
Sbjct: 533 VSTTVVEVGVNVPEARLIVIEEAESYGLAQLHQLRGRVGRSSEQGYCMLIAGDAASEGSR 592

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           TRL+ + NT DG  +AE DL  R  G+ +G +Q G   F +       +L+
Sbjct: 593 TRLNQMVNTHDGLELAEADLALRGSGDAVGTRQHGDAGFRLLNMAEDATLI 643


>gi|189485610|ref|YP_001956551.1| ATP-dependent DNA helicase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287569|dbj|BAG14090.1| ATP-dependent DNA helicase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 700

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 220/720 (30%), Positives = 339/720 (47%), Gaps = 44/720 (6%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            LN L   +   +G+G   S   +K+            D+L + P  + DR     I + 
Sbjct: 1   MLN-LDNKIQYLKGIGPGRSQTFAKL------GIITVGDMLTFFPVWYQDRKNIVSIRDA 53

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEM--------LKN 115
            ++    I G I +    QL +      I + DG       FF +K           +K 
Sbjct: 54  YKQPQSCIFGKIGKAYDRQLSRGLCLLYIEIFDGVSTGYARFFRKKNPYSSTDIFASIKK 113

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN---FPLIEAVYSLPTGLSVDLFK 172
            F  G    + G  K       +    Y    ++      F  I  VY L  GL+    +
Sbjct: 114 AFEPGTFAYIYGSTKTGNCGRFIDVDDYETVKNEKDKPLLFNRIMPVYPLTEGLNQRFIR 173

Query: 173 KIIVEALSRLPVL-PEWIEKDLLQKKSFPSIAE---AFNIIHNPRKAKDFEWTSPARERL 228
           + +   L  +  L P+ +  DL+         +   A   IH P   +D E     R   
Sbjct: 174 EAVKSILDSVCGLYPDVL--DLIPDFGGIPRLKSSLAIQKIHYPGTLEDVENA---RRAF 228

Query: 229 AYDELLAGQ----IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
           A  E    +    ++   +RK+ K++      ++  +     RN+    TK Q+ AI DI
Sbjct: 229 ALQEFFIFESALSLSHNNIRKKRKEQRY---EIQKTLFTAFKRNLKLEFTKDQKKAINDI 285

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
             DM     M R+L GDVG GKT+VAL A+  AV +G Q +I+AP  ILA+QHY  +   
Sbjct: 286 FSDMQSLYPMNRMLMGDVGCGKTVVALSAVLLAVGSGYQTMIVAPTEILAEQHYLTVSNM 345

Query: 345 TQNTQIIVEIITGNM--PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
                +   + T      ++ R K L    +G   I IGTH+L +D I++  L L++VDE
Sbjct: 346 LLGLSVKAVLATSLTLKKKSEREKILAGFENGDIKIAIGTHSLIEDKIKFKNLSLIVVDE 405

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           Q +FGV Q+  ++ KA +P +L+MTATPIPR+L LT  G +D++ I + P GR  +KT  
Sbjct: 406 QQKFGVMQKFAMSDKARSPDILMMTATPIPRSLALTVYGGMDMTAIKQLPPGRTSVKTYF 465

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAI 520
           +          +    L    + Y + P I+E  +   +S  +    L + +     + +
Sbjct: 466 LAEQS---AYIKAIEELKNKNQVYIVYPIIDESDKLVLKSAEQESKKLSQTWFRDFKVGL 522

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGRM    K  +M  FKN    +LI+TTVI VGIDV D +++II++AE FGL+ LHQLR
Sbjct: 523 LHGRMKSSKKNKIMLEFKNKEFDVLISTTVIGVGIDVPDVTVMIIQHAERFGLSDLHQLR 582

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GR+GRG + S   L+     ++ +  RLSV+ +T +GF IAEEDLK R  GE++G  Q G
Sbjct: 583 GRIGRGSKQSYAYLIGDLK-NEAARKRLSVMTSTNNGFKIAEEDLKMRGHGELMGTLQHG 641

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            PKF          ++E  +  A  I  QDP L+      ++ L+Y + +++  +FI  G
Sbjct: 642 FPKFKAGDLIKDADIIEFTKNLAAKITEQDPYLSKGENAVLKSLIYKH-FSDKIKFINIG 700


>gi|269794445|ref|YP_003313900.1| ATP-dependent DNA helicase RecG [Sanguibacter keddieii DSM 10542]
 gi|269096630|gb|ACZ21066.1| ATP-dependent DNA helicase RecG [Sanguibacter keddieii DSM 10542]
          Length = 758

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 219/728 (30%), Positives = 357/728 (49%), Gaps = 80/728 (10%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
           K+ S  L+K+        T   DLL ++P  + D     ++S +     VT+   +   +
Sbjct: 19  KRTSNQLAKL------GLTTTGDLLRHYPRRYADPGAMSQLSTLVVGEHVTVMAQVVSAT 72

Query: 81  SFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLK---NVFFEGRKITVTGKIKKLKNR 135
             +++ R     + +++DGT  ++L FF +    L+   +    GR    TG + + +N 
Sbjct: 73  VREMRSRGGAMLQAVVSDGTDRLSLTFFAKHPGALRTHESRLKPGRAGLFTGVVSEYRNE 132

Query: 136 IIMVHPHYIFHNSQDVN-------FPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPVLP 186
             + HP Y+       N          +  +Y      +     K + + L    +  L 
Sbjct: 133 RQLTHPDYLLPGVDVENEVDALLEVSRLMPIYPATASFASWKIHKCVRQVLDPLHVDDLA 192

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + +  D+L +++   + +AF  IH P    ++      ++RL Y+E    Q AL L R +
Sbjct: 193 DPVPADVLGRRNLVPLVQAFRDIHLPESESEW---HRGQKRLRYEEAFVLQTALALRRSE 249

Query: 247 FKKEIGIP--INVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
                     +  +G  I +     +PF+ T  Q     +I  +++  + M R+LQG+VG
Sbjct: 250 AAALEATSRTLVEDGPSILRDFDAALPFTLTTGQREVGDEIAAELAAPHPMQRLLQGEVG 309

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF-----------IKKYTQNTQIIV 352
           SGKT+VAL AM   V+AGGQA ++AP  +LA QH                         V
Sbjct: 310 SGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHARTLAALLGDLAAGGMLGGAAHGTRV 369

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+ P A ++K L   A G A I++GTHAL    +Q+ +L LV+VDEQHRFGV+QR 
Sbjct: 370 ALVTGSQPAAVKKKNLLDAASGAAGIVVGTHALLSAGVQFAELGLVVVDEQHRFGVEQRD 429

Query: 413 KLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---I 468
            L  KA T PH+L+MTATPIPRT+ +T  GD++ S + E PAGR  I T ++P  +   +
Sbjct: 430 LLRAKARTVPHLLVMTATPIPRTVAMTVFGDLETSTLREIPAGRSGITTYVVPAQKPAWV 489

Query: 469 DEVIERLKVVLSEGKKAYWICPQI--EEKKESNFRSVVE--------------------- 505
                +++  +  G++AY +CP+I  ++  E +    ++                     
Sbjct: 490 SRTWAKVREEIDAGRQAYVVCPRITGDDSSEDDATPALDPAALAGTDEDRDNPGGPAASA 549

Query: 506 ---------------RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                             +L       I I+HG+M   +KE+ M +F  G   LL++TTV
Sbjct: 550 ARSRTPLRAVLEVAAELAALEVFRGVRIGILHGQMPQAEKEAAMAAFTAGEVDLLVSTTV 609

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           IEVG+DV  A+ +++ +A+ FGL+QLHQLRGRVGRG +   C L+     ++ + TRL+ 
Sbjct: 610 IEVGVDVPRATAMVVLDADRFGLSQLHQLRGRVGRGADAGICFLVSEMADAEPAKTRLTT 669

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQ 669
           L +T DGF +A  DL+ R EG++LG  QSG      + +     +++E AR+DA  ++  
Sbjct: 670 LASTTDGFELAAADLEMRSEGDVLGAAQSGRSTSLQLLRVVRDTAVIEQAREDAAAVVAV 729

Query: 670 DPDLTSVR 677
           DP L +  
Sbjct: 730 DPTLVTHP 737


>gi|310828885|ref|YP_003961242.1| ATP-dependent DNA helicase RecG [Eubacterium limosum KIST612]
 gi|308740619|gb|ADO38279.1| ATP-dependent DNA helicase RecG [Eubacterium limosum KIST612]
          Length = 683

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 220/688 (31%), Positives = 347/688 (50%), Gaps = 29/688 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +    G+G K +         G    T   +LL ++P  +++R     + +   E 
Sbjct: 3   LSDSIRNISGIGPKRAEAF------GEHGITTIEELLDFYPRKYLNRKIMGSL-QTETEE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILL-------NDGTGEITLLFFYRKTEMLKNVFFEGR 121
            VT+    ++  + +  +R     +L       N  + +  +++F +    L++VF E  
Sbjct: 56  AVTVKAVAAKRGALRRIRRNMSLFVLPVVETLENGESVKGEIVWFNQ--PYLRDVFSENE 113

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR 181
                G++    NR  M +P +  H S+  +F ++  VY    G+  +  KK +     +
Sbjct: 114 TYYFFGRVVIKNNRRQMYNPQF-AHESKLEDFFILTPVYPKIEGIPRESLKKYMASVFRQ 172

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
             ++ + +     ++        A   IH P   +D       + R+ ++E L   I ++
Sbjct: 173 HLLIRDDLPACYRERYHLLPKEAALEKIHFPDTPQDV---VEGKGRIKFEEALKINIGIM 229

Query: 242 LMRKQFKKEIGIPINVEG-KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             R          I+++  +  ++  + +PF  T SQ S + DI  DM +   M R++QG
Sbjct: 230 NSRA---LNGVSKISLDNFEALRRFTKGLPFELTASQLSVLDDIAGDMKKGIVMNRLVQG 286

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT++A+         G Q   MAP  ILA QH    ++Y +   I VE++TG+  
Sbjct: 287 DVGSGKTIIAVACAYLMALNGYQTAYMAPTEILAGQHAANFRQYLEPYGICVELLTGSQK 346

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R    + IA G+A +IIGTHAL QDS+ YY L LVI DEQHRFGV+QR KL  K   
Sbjct: 347 TKERNAVTKTIASGEAQVIIGTHALIQDSVDYYNLGLVITDEQHRFGVKQRGKLGLKGEM 406

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PH L+M+ATPIPRTL L   GD+D+S I E P GRK IKT         +++  +   + 
Sbjct: 407 PHTLVMSATPIPRTLALILYGDLDVSYIDELPKGRKKIKTYFYNEKSYPKILSFMANEMD 466

Query: 481 EGKKAYWICPQIEEKKES-NFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSF 537
           +G++A+ ICP IEE +E    + +   F  + + +     IA ++ RMS  DK+ ++D+F
Sbjct: 467 KGRQAFVICPFIEESEEMSEVKDIQSVFAEVKQFYGSRYRIACLYSRMSGEDKKQIIDAF 526

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                 LL+AT++IEVGIDV + S+I I +A+ FGL+QLHQLRGRVGRG   S C L+ +
Sbjct: 527 NRCEIDLLVATSIIEVGIDVPNVSVITILSADRFGLSQLHQLRGRVGRGMHQSYCFLVSN 586

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
              +  +  R+ V+ N   G  IA+ED + R  G+  G+KQ G P+F    P     L+ 
Sbjct: 587 -SRNDQTIERMRVIVNNHSGKKIADEDYRLRGPGDYFGMKQHGFPEFKALNPYEDFDLIS 645

Query: 658 IARKDAKHIL-TQDPDLTSVRGQSIRIL 684
             +K AK I  + D +  + R + I   
Sbjct: 646 ETKKVAKEIYHSGDKETMAYRARIIETF 673


>gi|309810312|ref|ZP_07704150.1| putative ATP-dependent DNA helicase RecG [Dermacoccus sp. Ellin185]
 gi|308435740|gb|EFP59534.1| putative ATP-dependent DNA helicase RecG [Dermacoccus sp. Ellin185]
          Length = 729

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 227/717 (31%), Positives = 358/717 (49%), Gaps = 62/717 (8%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +PL    G G   +  L+K       +     DLL Y P  +ID H      E     
Sbjct: 6   LDSPLLAVLGSG---ARKLAK-----ARDLVTVRDLLDYFPRRYIDAHAGSTFGEFELGE 57

Query: 69  IVTITGYISQHSSFQLQKRRPY---KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
            V +T  +   +  ++Q R+      ++++D      + FF  +     +V   G++   
Sbjct: 58  HVVLTARVETMTQRRMQTRKGSMANAVIVDDEGRRAAVTFFSAQPHY--SVLRPGKRALF 115

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           +G++     ++ + HP Y   +  D++     +  VY     ++       I   L  L 
Sbjct: 116 SGQLGLFNKQLQLSHPQYTLMDDADMSVYPGSVVPVYKQVEKITNLNLTLSISTVLDALG 175

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            +P+ +++ L  +    +   A+  +H P    D +     RERL +DE    QI L   
Sbjct: 176 EIPDPLDEPLRARHGLVTTTRAYRGLHLPASMADVQ---AGRERLRFDEAFTTQIVLAQR 232

Query: 244 RKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           R + + E   P +   G + ++    +PF  T+ Q    + I +D+++   M R+LQG+V
Sbjct: 233 RHEARSEPSTPRVAKPGGLLERFDATLPFELTEGQREVGEQIARDLAEPVAMHRLLQGEV 292

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQII 351
           GSGKTLVAL AM A V++G QA ++AP  +LA QH   ++               +    
Sbjct: 293 GSGKTLVALRAMLAVVDSGAQAALLAPTEVLAAQHAASMRAMLGPLAERGRLGGADDGTR 352

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V ++TG+M  + R +AL  I  G+A I+IGTHAL Q  +++  L LV+VDEQHRFGV+QR
Sbjct: 353 VTLLTGSMSASARTQALLDIVSGEAGIVIGTHALLQKHVEFADLGLVVVDEQHRFGVEQR 412

Query: 412 LKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI---NR 467
             L+ KA   PHVL+MTATPIPRT+ +T+ GD+D+S + + P GR PI + ++P    + 
Sbjct: 413 AALSSKAHRPPHVLVMTATPIPRTVAMTAFGDLDVSTLRQLPRGRAPIVSHVVPTHVASW 472

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKES------------------------NFRSV 503
           ++ V ER+    + G++ Y +  +I +  E                             +
Sbjct: 473 MNRVWERIAEECAAGRQVYVVAGRIGDGSEPVAPGLVDGPDAHGAGEGDAAARPIGVVDL 532

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           ++    L       I ++HGR+   +K+ VM  F  G   +L+ATTVIEVG+DV +AS+I
Sbjct: 533 IDEMRRLPALAGLRIGLMHGRLPAEEKDDVMRRFGAGEVDVLVATTVIEVGVDVPNASMI 592

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +I +A+ FGL+QLHQLRGRVGRGE    C LL     + ++  RL  +  T DGF IA+ 
Sbjct: 593 VIVDADRFGLSQLHQLRGRVGRGEHGGLC-LLVTRNENPDTLERLRRVAETNDGFAIADL 651

Query: 624 DLKQRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           DL  R+EG++LG  QSG      +L        +++E AR +A  I+  DP LT   
Sbjct: 652 DLDLRREGDVLGAAQSGRRSSLDWLELTKASDLAVIEAARTEAAAIVEADPSLTEHP 708


>gi|326773647|ref|ZP_08232930.1| ATP-dependent DNA helicase RecG [Actinomyces viscosus C505]
 gi|326636877|gb|EGE37780.1| ATP-dependent DNA helicase RecG [Actinomyces viscosus C505]
          Length = 752

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 219/753 (29%), Positives = 347/753 (46%), Gaps = 86/753 (11%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           VGK+ +  L+K             DLL   P  +        +  + E    TI   + +
Sbjct: 5   VGKRTAAQLAK------QGVETGADLLRLLPRRYDTWGELTDMRTLVEGEQATIQAQVVR 58

Query: 79  HSSFQLQKRR---PYKILLNDGTGEITLLFFYRKTEMLKN--VFFEGRKITVTGKIKKLK 133
            SS + +  R     +  + DG   + L+ F    +M         G  + ++GK+   +
Sbjct: 59  ASSRRTRSGRVPALMEATVTDGASTMDLVQFGAAGQMRARAAQLAPGTTVLLSGKVGFHR 118

Query: 134 NRIIMVHP-----HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LP 186
            R  + +P       +  + +         +Y     L   L  K +   L +L    + 
Sbjct: 119 GRKQLSNPRLYVLDELDEDERAALLARPMPIYPGTEALPSWLVAKAVRSVLDQLEPGDVA 178

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + + ++L ++        A+  +H P   +D      AR+RL ++E L  Q+AL   R  
Sbjct: 179 DPLPEELRREAELVDAYTAYRWVHRP---EDSGQWKAARKRLRHEEALILQVALAQRRAH 235

Query: 247 FKKEI----GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +             EG +   +   +P+  T  Q+   ++I  D+++   M R+LQGDV
Sbjct: 236 HEATCTAVAWPVPEEEGSLRADLDARLPYDLTAGQKRVGEEISADLARTVPMQRLLQGDV 295

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-----------I 351
           GSGKTLVAL AM   V  GGQ  ++AP  +LA QH+  ++                    
Sbjct: 296 GSGKTLVALRAMLQVVGGGGQTALLAPTEVLAAQHHSSLEAVLGPMARLGMLGGAERATR 355

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V ++TG+ P A RR+ L  +A G+  I++GTHAL  D++Q   L LV+VDEQHRFGV QR
Sbjct: 356 VHLLTGSTPAAQRRRILTDLAAGEPAIVVGTHALLSDTVQIPFLGLVVVDEQHRFGVAQR 415

Query: 412 LKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
             L +          +   PH+L+MTATPIPRT+ +T  GD+  S + E PAGR  + T 
Sbjct: 416 DALRERGGLTDPATGQTHTPHLLVMTATPIPRTIAMTVFGDLATSVLDELPAGRSVVPTH 475

Query: 462 IIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------------------ 500
           ++P +R   ++ +  R    ++ G + Y +CP+IE   E                     
Sbjct: 476 LVPWSRTSWVEGIWRRAAKEVASGGRVYVVCPRIEVDDEPRHTPMDGAAAVETDDGPKQE 535

Query: 501 ------------------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                                  R           + ++ GRMS  DK + M  F +G  
Sbjct: 536 ALAEEGDGSHPDRPLAAVEDWRRRLAGEPALGGIGVGVLTGRMSGEDKAAAMADFASGNT 595

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L++TTVIEVG+DV +AS+++I +AE FGL+QLHQLRGRVGRG   S C+ +    +  
Sbjct: 596 PVLVSTTVIEVGVDVPEASMMVILDAERFGLSQLHQLRGRVGRGSRPSLCVAVTGAEVGS 655

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARK 661
            ++ RL    +T DGF +AE DL+ R EG++LG  QSG      + +      L+  AR+
Sbjct: 656 IAFHRLKAFASTTDGFALAEADLELRSEGDVLGASQSGRTSGLDLLRVTRDARLIATARR 715

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
            A+ I+  DP L+  R  +  I+  L + ++AF
Sbjct: 716 QAERIVAADPQLSDHRALAAAIVERLDEESQAF 748


>gi|329729981|gb|EGG66372.1| ATP-dependent DNA helicase RecG [Staphylococcus epidermidis VCU144]
          Length = 593

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 203/571 (35%), Positives = 326/571 (57%), Gaps = 13/571 (2%)

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           +  +FF +    LK        +T+ GK  + K  I        F + ++     +E +Y
Sbjct: 7   VKCVFFNQ--PYLKKKLELNSIVTIKGKWNRNKQEINGNR--IFFKDQKNQEDTHLEPIY 62

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
            +  G+     +  I +ALS +  + EW+  DL +K    ++A     +H+P   ++   
Sbjct: 63  RIKEGIKQKQLRDNIRQALSDV-TIHEWLTDDLREKYKLETLAYTIQTLHHPINKQNLLR 121

Query: 221 TSPARERLAYDELLAGQIALL-LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
               R   A+ EL   ++ +  L R +   +  I IN +    ++ + ++PF  T +Q+ 
Sbjct: 122 A---RRTYAFTELFMFELRMQWLNRLEKTSDEAIEINYDINKVKQFIDSLPFELTDAQKV 178

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           ++ +I +D+    RM R+LQGDVGSGKT+VA I M A   AG Q+ +M P  ILA+QH E
Sbjct: 179 SVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQHAE 238

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            + +   NT   V ++TG++    RR  LE++ +G    +IGTHAL QD + +  + LVI
Sbjct: 239 SLIQLFGNTM-NVALLTGSVKGKKRRLLLEQLENGTIDCLIGTHALIQDDVVFNNVGLVI 297

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            DEQHRFGV QR  L +K    +VL MTATPIPRTL ++  G++D+S I + P GRKPIK
Sbjct: 298 TDEQHRFGVNQRQILREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIK 357

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLH-EHFTSS 517
           T      + D+V+ ++   L +G++AY ICP IE  +   + ++VV  + SL  ++    
Sbjct: 358 TSWAKHEQYDQVLAQMSNELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQSDYGNEK 417

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + ++HG+MS  DK+ VM  F      +L++TTV+EVG++V +A+ ++I +A+ FGL+ LH
Sbjct: 418 VGLLHGKMSAEDKDQVMQKFSKHEIDILVSTTVVEVGVNVPNATFMMIYDADRFGLSTLH 477

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGR E  S C+L+  P  ++    R++++  T DGF ++E DL+ R  G+  G+K
Sbjct: 478 QLRGRVGRSEHQSYCVLIASPK-TETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVK 536

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           QSG+P FL+A       +LE+AR +A  ++ 
Sbjct: 537 QSGLPDFLVANVVEDYRMLEVARDEAAELIQ 567


>gi|293192359|ref|ZP_06609470.1| ATP-dependent DNA helicase RecG [Actinomyces odontolyticus F0309]
 gi|292820274|gb|EFF79268.1| ATP-dependent DNA helicase RecG [Actinomyces odontolyticus F0309]
          Length = 715

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 219/716 (30%), Positives = 351/716 (49%), Gaps = 48/716 (6%)

Query: 1   MRPSFLNPLFAPLS-TFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP 59
           MR   ++ L  PLS       KK +  L        A      DLL   P  +       
Sbjct: 1   MR--LVSALDVPLSLRLP---KKTAKALE------GAGVATVGDLLLVAPRRYYHWGRLT 49

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEML---K 114
            +S + E   VTI   ++       +       ++ L DG   ++  FF +    L   +
Sbjct: 50  PLSSLREGEDVTILAEVAGAHLVANRSSSGVRLEVTLTDGVQFLSATFFAKNQYKLAPIE 109

Query: 115 NVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFK 172
            +   G+     GK+   + ++ + HP +   + +D+         +Y     L+     
Sbjct: 110 RLLTPGQSFLFAGKVGAYRGKLQLTHPSFEGVDGEDIERIASRPIPIYPATGSLASWAIA 169

Query: 173 KIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
           + I   L  L    +P+ +  D+ ++  F S A+    +H P   +D++     R+ LA+
Sbjct: 170 RAIGMVLDHLDDAHVPDPVPADVRERAGFASHADCLRALHQPETDEDYQQA---RKALAF 226

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            E    Q+ L   R+  +    +   ++  + ++   ++PF  T SQ  A+  I  D++ 
Sbjct: 227 AEAFVLQVGLAAQRRGARAVAALASPIDAPLCERFRSSLPFELTDSQREAVAQIGADLAG 286

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ- 349
           +  M R+LQGDVGSGKT+VAL A+   V AG Q   +AP  +LA+QH   ++   +    
Sbjct: 287 EVPMQRLLQGDVGSGKTVVALSALLQVVAAGHQGAFVAPTEVLAEQHAASLRALLEPLGA 346

Query: 350 --IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
               V ++TG+   A RR+    +   +  I+ GTHALFQ+S+++  L LV+VDEQHRFG
Sbjct: 347 DAPDVRLLTGSTTPAARREIQSAMNAAEPLIVAGTHALFQESVRFADLALVVVDEQHRFG 406

Query: 408 VQQRLKLT---QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           V+QR  L    +   A H L+MTATPIPRT+ +T  GD+D ++++  P+GR P+ T +  
Sbjct: 407 VEQRAALRGAREDGRAVHELVMTATPIPRTIAMTVFGDLDDTRMSGMPSGRTPVATYLAD 466

Query: 465 ---INRIDEVIERLKVVLSEGKKAYWICPQI---------EEKKESNFRSVVERFNSLHE 512
                 ++    R    +++G++ Y +CP+I         EE+      SV E    L  
Sbjct: 467 SANAAWVERTWARAAEEIAQGRRVYVVCPRIDASDDVADAEEEGARPLASVEEVTAYLRS 526

Query: 513 HFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           H   S   I  + GR     K  +M+ F  G   LL+ATTVIEVG+DV +A++++I +A+
Sbjct: 527 HPALSGIAIHELTGRTPSPVKAQIMEDFSTGRAPLLVATTVIEVGVDVSEATLMVILDAQ 586

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            FGLAQLHQLRGRVGR    S CI ++   L+ +   RL    +T DGF +AE DL+ RK
Sbjct: 587 QFGLAQLHQLRGRVGRSSLPSLCIAMHRHELTDSGRARLQAFADTTDGFELAEADLRLRK 646

Query: 630 EGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR--GQSIR 682
           EG++LG  QSG             ++L+  A+ +A+ +L QDP L       +++R
Sbjct: 647 EGDVLGAGQSGTATHLRFLSVRRDEALIRRAKGEAETLLEQDPMLARHPDLARALR 702


>gi|169630359|ref|YP_001704008.1| ATP-dependent DNA helicase RecG [Mycobacterium abscessus ATCC
           19977]
 gi|169242326|emb|CAM63354.1| ATP-dependent DNA helicase RecG [Mycobacterium abscessus]
          Length = 746

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 213/710 (30%), Positives = 356/710 (50%), Gaps = 70/710 (9%)

Query: 36  ANETRFIDLLFYHPSSF-IDRHYRPKIS--EISEERIVTITGYISQHSSFQLQKRRP--Y 90
                  DLL ++P  +  D   R +            T+ G+I+     +++ R+    
Sbjct: 24  FGLITVEDLLHHYPRRYSTDFSLRDEQDGESAKPGEHTTLVGFITSAELKRMRNRKGQFL 83

Query: 91  KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN--- 147
            + L      +   FF+     +K     G ++ ++G + + + +  + HP Y+      
Sbjct: 84  SVTLGSAPHAVQATFFH--PHKVKRDLQVGNRVMLSGAVGEFRGKPQLTHPDYLVLETAL 141

Query: 148 ------------------SQDVNFPL------IEAVYSLPTGLSVDLFKKIIVEALSRLP 183
                             ++D +  +      +  +Y     L      + I + L++L 
Sbjct: 142 GESTETRGSTALRGIAGAARDASTAISAFQRNVFPIYPATKNLESWDIYRCIDQVLTQLD 201

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            +PE +   +L +    S+ EA   IH    ++D      AR RLA+DE L  Q+AL + 
Sbjct: 202 PVPEALPDAVLAEYGLMSLDEALRKIHM---SEDASEQKQARRRLAFDEALGLQLALAMR 258

Query: 244 RKQFKKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           R       G P+ +     +  +L  +PF  T+ Q   + +I +D++    M R+LQG+V
Sbjct: 259 RGSEIGSAGPPMPLAQAGLRADLLGQLPFDLTEGQRHVVAEIGEDLAGVKPMNRLLQGEV 318

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-----------I 351
           GSGKT+VAL+AM  A++AG Q  ++AP  +LA QH   ++    +               
Sbjct: 319 GSGKTVVALLAMMQAIDAGYQCALLAPTEVLAVQHARSLRAMLGSLATAGELGAPDDATS 378

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           + ++TG+M  A +++    +A G A I+IGTHAL QDS+ ++ L LV+VDEQHRFGV+QR
Sbjct: 379 IALLTGSMSPAVKKQIKADVATGLAGIVIGTHALLQDSVDFHNLGLVVVDEQHRFGVEQR 438

Query: 412 LKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
            +L  KA+    PH+L+MTATPIPRT+ LT  GD++ S + E P GR+PI T  +     
Sbjct: 439 DRLRAKASQGIVPHLLVMTATPIPRTVALTVFGDLETSTLRELPRGRQPITTTAVFTREK 498

Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQIE-----------EKKESNFRSVVERFNSLHEH 513
              +    ER+   ++ G++AY +  +I+           E+K      V E + ++   
Sbjct: 499 PGWLARGWERIAEEVAAGRQAYVVASRIDADDKDSGPEEAEEKRPPPVPVTELYETIRGS 558

Query: 514 FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 I ++HGR+    K++VM +F  G   +L+ TTVIEVG+DV +A++++I +A+ F
Sbjct: 559 LLPGLRIGLLHGRLPSEQKDAVMTAFNAGEIDVLVCTTVIEVGVDVPNATVMLIMDADRF 618

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           G++QLHQLRGRVGRG     C+L+     + ++  RL  +++T DGF +AE DL++R+EG
Sbjct: 619 GISQLHQLRGRVGRGGNKGLCLLVSPCSPAGSAGRRLRAVQDTLDGFTLAELDLEERREG 678

Query: 632 EILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
           ++LG  QSG      +     H  ++E AR+ A      DP+L      +
Sbjct: 679 DVLGRDQSGRAVNLRLLSLLDHRDMIETAREMAMRACADDPELAQQPALA 728


>gi|260904759|ref|ZP_05913081.1| ATP-dependent DNA helicase RecG [Brevibacterium linens BL2]
          Length = 715

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 219/703 (31%), Positives = 358/703 (50%), Gaps = 49/703 (6%)

Query: 37  NETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYK--ILL 94
             T   DL  + P  F+    +  +  +       +   +    + ++QKRR     +++
Sbjct: 21  GITSVADLFRFFPRRFLVPGEKTPLGGLPLGETAILQAEVISVDTRRMQKRRGTITDVIV 80

Query: 95  NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS------ 148
           +DG   + + FF ++   L +    G  +   GK+++ + ++ +  P ++  +       
Sbjct: 81  HDGQQSMKIAFFNQR--WLDSQLVPGLTVVFAGKVEEYRGQLTLNSPTWLNRDEHDEKWT 138

Query: 149 -QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEWIEKDLLQKKSFPSIAEA 205
            +D+N P    VYS   G++     K I   L         + +   + +    P +  A
Sbjct: 139 PEDLNSPF--PVYSRVKGIAQTRLWKAIKVLLDVAGPDEFEDPLPTAMRENLDLPDLRTA 196

Query: 206 FNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI 265
            N +H PR A   E    A++R  ++E LA Q   +  +  ++K    P+   G  +++ 
Sbjct: 197 LNDMHRPRSAAATE---KAKQRWKWEEALALQAEFVSRKADYEKLEATPLLNVGARSERF 253

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
             ++PF  T SQ    ++I  DM +K  M R+L GDVGSGKT+VAL AM  AV++G QA 
Sbjct: 254 DNSLPFYLTASQLRVGEEIEADMGRKTAMHRLLHGDVGSGKTVVALRAMLTAVDSGAQAA 313

Query: 326 IMAPIGILAQQHYEFIK-----------KYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++AP  +LA QH+  I+             + + Q+ V ++TG+MP   R++    +A G
Sbjct: 314 MLAPTEVLATQHFRSIETLLGDQMALSPLLSSDDQVRVALLTGSMPARERKQLALDLATG 373

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--TAPHVLLMTATPIP 432
           Q  I++GTHAL  D+  +  L L++VDEQHRFGV+QR  L  KA    PH L+M+ATPIP
Sbjct: 374 QIDIVVGTHALMSDTTMFDTLGLIVVDEQHRFGVEQREALRAKAGLKVPHTLVMSATPIP 433

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWI 488
           RT+ +T   D+D+S + E PAG K I T  + +    N +  V++ +      G+  + +
Sbjct: 434 RTVAMTVFADLDVSTLDEMPAGTKDITTHAVSLGDHPNWLGRVLQLIDEAAENGRGTFVV 493

Query: 489 CPQIE-----EKKESNFRSVVERFNSLHEHFTSS-------IAIIHGRMSDIDKESVMDS 536
            P+IE     + +  +     +    L +   +S        A++HGRMS  +K+  M +
Sbjct: 494 FPRIEPSDIEDPETGDVIGARKGIEDLKDFLQNSDELRSRSTALLHGRMSPAEKDRTMAA 553

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G   +L++TTV+EVG+DV  A++++I  AE FG+AQLHQLRGRVGR    + C LL 
Sbjct: 554 FVSGETDILVSTTVVEVGVDVPRATMMVIFEAERFGVAQLHQLRGRVGRDGSAAMCFLLT 613

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             P    S+ RLS +  T DGF +AE DL  R EG++LG  Q G              ++
Sbjct: 614 DMPEVDESFERLSEVAGTLDGFALAEYDLGTRGEGDVLGSSQWGGSSLKHLSILRDAPIV 673

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           E AR  A+ I++ DPDL+++   ++R  +      E+  FI A
Sbjct: 674 EEARTIAEKIISVDPDLSALP--ALRAFISRVLPAESAHFIEA 714


>gi|302335847|ref|YP_003801054.1| ATP-dependent DNA helicase RecG [Olsenella uli DSM 7084]
 gi|301319687|gb|ADK68174.1| ATP-dependent DNA helicase RecG [Olsenella uli DSM 7084]
          Length = 720

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 212/691 (30%), Positives = 333/691 (48%), Gaps = 34/691 (4%)

Query: 9   LFAPLSTFRGV-GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           L   ++  R V G +    L                LL + P  ++D      I+     
Sbjct: 20  LDDDVARLRYVSGARRDALLR-------VGVPTVGALLHHMPHRYLDFSCVTDIAHADVG 72

Query: 68  RIVTITGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              T+     +    + + R     I   D TG + + FF  +   +     EG +I ++
Sbjct: 73  DEATVVAVADRVQLKRPRPRMQVVEIFALDATGVMQVSFF--RQPWIAEQVKEGDRIALS 130

Query: 127 GKIKKLKNRIIMVHP--HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           GK+        M  P    +       +F  I  V+ +  G++V   ++I+  AL+    
Sbjct: 131 GKVTFGYGFKQMRAPLLEVLGPEDDSADFARILPVHPVAEGITVPWMRRIVSAALADAGD 190

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA-LLLM 243
           + +++   LL        A A   IH PR   + +     R RLAYDELL  Q+A +   
Sbjct: 191 VCDFMPSQLLTGHRLMGEARALRAIHFPRTLAERDGA---RRRLAYDELLCLQLALVARQ 247

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R + +          G   + +L  +PF+ T  Q  A  DIL DM+    M R+L GDVG
Sbjct: 248 RIELRGIEPTCHVTSGPRMRSLLEQLPFALTDEQRQAADDILADMAAPRVMGRLLLGDVG 307

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT+VA +A+AA  ++  QA +MAP  +LA+Q+ E +        I   ++TG      
Sbjct: 308 TGKTVVAALALAAVADSATQAAMMAPTSVLARQYAERLGPLLDAAGISWGLVTGATAPEE 367

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           R      +A G   ++ GT A+  D + + +L LV++DEQHRFGV QR +L +K  A  +
Sbjct: 368 RAALAHGVADGTVTVVFGTTAVLSDDMDFSRLTLVVIDEQHRFGVGQRTRLRRKGAAADL 427

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL L+  GD+  S+I  +P     I+T  I    +D     ++  ++ G 
Sbjct: 428 LAMTATPIPRTLALSVYGDMSCSRIRHRPCPGASIETHCIAPESLDLAFGAIREAVAVGH 487

Query: 484 KAYWICPQIEEKKES---NFRSVVERFNSLHEHFTSSIA--------------IIHGRMS 526
           +AY +CP ++E  +    +     ER  +   H  + +A              ++ GRM 
Sbjct: 488 QAYVVCPLVDEHDDGSGLDDVPERERSGATGAHAATQVASDLSRTALSGLSLDLLTGRMG 547

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+  M+ F+ G   +L++TTVIEVG+DV +A+++++ +A+ FGLA LHQLRGRVGRG
Sbjct: 548 SQEKDEAMERFRAGRTDVLVSTTVIEVGVDVPNATVMLVFDADRFGLATLHQLRGRVGRG 607

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
           +      L         +  RL+ L+ T DG  +AE DL+ R EGE+LG +QSG P    
Sbjct: 608 DSPGVVYLSCAARKGTPARRRLAALEATSDGLELAELDLRLRHEGEVLGYRQSGGPTLKA 667

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           +       L+E A +DA+ I  +DP L+S R
Sbjct: 668 SDLVADADLVEWAHEDARRIAEEDPTLSSDR 698


>gi|213650299|ref|ZP_03380352.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 574

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 224/578 (38%), Positives = 330/578 (57%), Gaps = 18/578 (3%)

Query: 130 KKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VL 185
           K+ K    M+HP Y              +  VY    G+     +K+  +AL  L    +
Sbjct: 1   KRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAI 60

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDELLAGQIALL 241
            E +  +L Q     S+ EA   +H P       D E    PA+ RL  +ELLA  +++L
Sbjct: 61  AELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSML 118

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++QGD
Sbjct: 119 ALRAGAQRYHTQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGD 178

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G    
Sbjct: 179 VGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKG 238

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT----QK 417
             R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L     Q+
Sbjct: 239 KARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQ 298

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++ 
Sbjct: 299 GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRN 358

Query: 478 VLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
             + EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM 
Sbjct: 359 ACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQ 418

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 419 AFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL 478

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           Y  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      ++
Sbjct: 479 YKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAM 538

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           +   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 539 IPEVQRIARHIHERYP--QQAQALIERWMPETERYSNA 574


>gi|227872675|ref|ZP_03991005.1| DNA helicase RecG [Oribacterium sinus F0268]
 gi|227841489|gb|EEJ51789.1| DNA helicase RecG [Oribacterium sinus F0268]
          Length = 679

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 222/680 (32%), Positives = 364/680 (53%), Gaps = 19/680 (2%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +   +GVG+K +    K+      N     DLL   P S++       ISE  E+ 
Sbjct: 2   LQDAVERIKGVGEKTAALFHKM------NIYTKEDLLEDFPISYLQYPKLCPISEAREKE 55

Query: 69  IVTITGYISQHSSF-QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            +  +  + + +   +  K    +    D +G++ + +F+     L     +GRK+   G
Sbjct: 56  WMAFSLVLLEDARVLRNTKLSMLQCSAADESGKLLIQYFH--ASYLLKTLKKGRKLVFFG 113

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           ++K  +  +I+  P        +     +E +YSL  GL   L +K I E     P + E
Sbjct: 114 QVKSFRGHLILQQPKIFSLEEYEEKRKSLEPIYSLRKGLGNALRRKCIQEIFKEEPKILE 173

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
              +D L+K+   +  +A   +H P++    E      +RLA++EL    + L    + F
Sbjct: 174 SFPRDFLEKEGLCNKKQAMEYLHLPKRE---EERQEGLKRLAFEELFYYSLFLEKEERDF 230

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
               G    + GK  ++  + +PFS TK+Q  A++++ +  SQ  R+LR +QGDVGSGKT
Sbjct: 231 LSLSGNEEKIPGKR-EEFQKGLPFSLTKAQSEALEEMDRVFSQGERLLRFVQGDVGSGKT 289

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRR 365
           ++A   +      G Q  IM P  ILAQQH++ ++K  +    +I + ++ G+  +  + 
Sbjct: 290 ILAFYVLFLMASKGFQTAIMVPTEILAQQHFQKLQKLLEENQWEIPIALLIGSSSKKEKE 349

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           +  + +  G    +IGT AL Q+ + +  L ++++DEQHRFG+Q+R +L +K   PH + 
Sbjct: 350 RIYQGLKEGSILGVIGTQALIQEGLAFSHLKMLVIDEQHRFGIQERNRLEKKGENPHCIY 409

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           ++ATPIPR+LV    G +    ++EKPA R PIK  +      ++    +K  L +G++A
Sbjct: 410 LSATPIPRSLVKLLYGAVPYLLLSEKPANRLPIKNALFSPADREKAFSFIKKELDKGRQA 469

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP +EE +  +  SV     +L ++F    S A++HG+M   +KE VM  F +G  +
Sbjct: 470 YIICPLVEENENLSVESVTAYQKNLKQYFGKDYSFAVLHGKMKAGEKEQVMQDFSSGKTR 529

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTV+EVG+DV +A++++IENAE FGLAQLHQLRGRVGR E  S CI + H    + 
Sbjct: 530 ILLSTTVVEVGVDVANATVMLIENAERFGLAQLHQLRGRVGRSELQSYCIFMDHKE-DEK 588

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEI-LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           S  RLS+++++ DGF IA+EDL  R  G++  G +QSG  +F  A P   + L   AR+ 
Sbjct: 589 SQKRLSIIRDSNDGFAIAKEDLALRGPGDLFFGERQSGPLQFRFADPLRDEELFFKAREA 648

Query: 663 AKHILTQDPDLTSVRGQSIR 682
           AK +L +D  L     Q I+
Sbjct: 649 AKTLLEEDALLERPEHQGIK 668


>gi|261749557|ref|YP_003257243.1| ATP-dependent DNA helicase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497650|gb|ACX84100.1| ATP-dependent DNA helicase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 705

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 219/687 (31%), Positives = 352/687 (51%), Gaps = 30/687 (4%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI-- 64
           N L   +   +G   K +   +            + DLLF++P+ ++       ISE+  
Sbjct: 4   NVLEKSIEYLKGFSLKKTRLFN-----IELQIHTYEDLLFFYPTKYVRYFILNNISELIK 58

Query: 65  ---SEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
              +E  ++ ITG I+         +KR+     L D TG + L++F +     + +  +
Sbjct: 59  KNPTENTLIQITGKITHLEEINYQNKKRKILVAHLEDETGYVELVWF-QTINFFRKIIKK 117

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT-----GLSVDLFKKI 174
              ITV G+IK  + +I ++HP        + N+ +   +YS+P      G++     +I
Sbjct: 118 NMTITVHGRIKHFQGKIQIIHPDIQKFQFSEKNYSIY-PIYSIPKKLRENGINNSFMIEI 176

Query: 175 IVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
           +   +      + E   +D+++K+      EA   IH P+  +   + +  R +      
Sbjct: 177 LKNLIEESKNDIEEIFLQDIMKKE-LMQRKEALIQIHFPQSLEKL-FQAKYRLKFEELFF 234

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKN 292
           L   +     R +       P +  GK      +  +PF  T+ Q+   ++I  D+ +  
Sbjct: 235 LKLFLLSKKNRNKSSSSNSYPFSRLGKNFYNFYKYCLPFPLTEEQKRVFREIRNDLKKPM 294

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           +M R+LQGDVG GKT++A+ +M  A++ G Q+ +M P  +LA QHY  IKK      I +
Sbjct: 295 QMNRLLQGDVGCGKTIIAVFSMLLALDNGFQSCLMVPTEVLAIQHYSSIKKMFSGIGIQL 354

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++T +     R+     +  G+  I+IGTH L QD++ +  L L I+DEQ RFGV+QR 
Sbjct: 355 ALLTSSTSIQMRKCIYHDVFIGKISILIGTHTLIQDTVHFKNLGLAIIDEQQRFGVEQRA 414

Query: 413 KLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           K+ +     PH+L+MTATPIPRTL +T   D+ IS I E P  RKPIKTV        +V
Sbjct: 415 KILEKNERPPHILIMTATPIPRTLAMTLYNDLKISIIREFPINRKPIKTVHFRNKNRSKV 474

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           +E +K  + +G++ Y + P IE+ K+       N     +            I I+HGRM
Sbjct: 475 LEIIKNQIQKGRQIYIVHPTIEKFKKNGSKNLMNLMRGYQLIKENFPKLKDRIGILHGRM 534

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S  +K   M+ F  G   ++++TTVIEVG+DV +AS+I+IENA+ FGL+QLHQLRGRVGR
Sbjct: 535 SYQEKNIQMNRFLRGETLIMVSTTVIEVGVDVPNASVILIENADCFGLSQLHQLRGRVGR 594

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
           G   S C+L+ +  +S  S+ R+ ++  T+DG  IA++DLK R  G+++G KQSG   F 
Sbjct: 595 GPHPSYCLLMTNEKISVESHFRMKIMCETKDGLEIAKKDLKLRGSGDLIGTKQSGNAYFR 654

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPD 672
           IA       L++     AK    ++PD
Sbjct: 655 IANLLKDYKLIKEVIPIAKKFFNKNPD 681


>gi|226324789|ref|ZP_03800307.1| hypothetical protein COPCOM_02575 [Coprococcus comes ATCC 27758]
 gi|225207237|gb|EEG89591.1| hypothetical protein COPCOM_02575 [Coprococcus comes ATCC 27758]
          Length = 595

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 207/596 (34%), Positives = 326/596 (54%), Gaps = 17/596 (2%)

Query: 10  FAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
            + +   +G+G K      K+            DLL Y+P  +        + E+ E +I
Sbjct: 4   QSEIRNLKGIGAKTEELFHKM------GIFTIGDLLRYYPRGYDVYEEPVSVGELEEGKI 57

Query: 70  VTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            T+ G I         KR +     + D TG + +++F  +   L+N   +G  + + G+
Sbjct: 58  STVKGVIYGRVQVGGGKRMQITTAYVKDLTGTLKVIWF--RMPFLRNTLKQGMPVIIRGR 115

Query: 129 IKKLKNRIIMVHPH-YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           +   K+++IM HP  +   +S D     ++ +Y L  G++ +   K +  A+  L ++ +
Sbjct: 116 VVSKKDQLIMEHPELFSPPDSYDKKCGTLQPIYPLTAGMTNNAVAKAVKGAMEYLDLVSD 175

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            + KDL  +        A   IH P    +F     ARERL ++E L   +AL   R++ 
Sbjct: 176 DLPKDLRLRYHLAEYNYAIRGIHFPLDKAEF---YHARERLVFEEFLVFVLALRRTRERN 232

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           ++     +        + L N+P+  T +Q+   + I ++M  K  M R++QGDVGSGKT
Sbjct: 233 ERAENGFVIKRRSEIDRFLANLPYELTGAQKRVWEQIQEEMCGKLVMSRLIQGDVGSGKT 292

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV--EIITGNMPQAHRR 365
           +VAL+A+  A   G Q  +MAP  +LA+QHYE I +  +  QI V  E++TG+M    +R
Sbjct: 293 IVALLALLLAALNGYQGAMMAPTEVLAKQHYESIIEMLEKYQIPVKTELLTGSMTAKEKR 352

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           +A +RIA G+  I++GTHAL Q+ ++Y  L LV+ DEQHRFGV+QR  L  K   PH+L+
Sbjct: 353 EAYQRIAAGEVQIVLGTHALIQEKVEYQNLALVVTDEQHRFGVRQREALAGKGQIPHILV 412

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPRTL +   GD+DIS I E PA R PIK  ++  +        ++  ++EG++ 
Sbjct: 413 MSATPIPRTLAIILYGDLDISVIDELPANRLPIKNCVVDTSYRPTAYRFMQKQVAEGRQC 472

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP +EE +  +  +V++    L         IA +HGRM   +K+ +M +F     +
Sbjct: 473 YVICPMVEESEAMDAENVLDYAQLLQSEMGDKIRIAALHGRMKQAEKDEIMGAFAKNEIQ 532

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +L++TTVIEVGI+V +A++I++ENAE FGLAQLHQLRGRVGRG   S CI +    
Sbjct: 533 VLVSTTVIEVGINVPNATVIMVENAERFGLAQLHQLRGRVGRGRHQSYCIFMSGSK 588


>gi|256827001|ref|YP_003150960.1| RecG-like helicase [Cryptobacterium curtum DSM 15641]
 gi|256583144|gb|ACU94278.1| RecG-like helicase [Cryptobacterium curtum DSM 15641]
          Length = 741

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 210/722 (29%), Positives = 347/722 (48%), Gaps = 50/722 (6%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           R S +     P+S  +GV    +  L+      +       DL+   P  ++D   R  I
Sbjct: 20  RLSAVLAFDGPVSQVKGVSAGRASVLA------SWGVRTVRDLIDRFPHRYLDMSERTTI 73

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           +  +  +  T+ G+I +    + + R     I L D TG + +  F  +   L +   EG
Sbjct: 74  AAATIGQSCTVAGWIHEIKLKRPKPRLDLVEITLRDATGTLLVTCF--RQPWLADRLHEG 131

Query: 121 RKITVTGKIKKLKNRIIMVHPH-YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             + ++GKI+       M +P+  +   S D    +I  ++     L+    ++++  AL
Sbjct: 132 DTVALSGKIEFSYGFKRMTNPYLEVVEGSLDAVEGIIIPIHPAGGKLTAAWVRRLVSSAL 191

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI- 238
           S    L + +  DL  +    S   A   IH P      +    AR RLAY+E+   ++ 
Sbjct: 192 SLCAGLDDPLPLDLRVQYRLMSRQTALQCIHFPHT---MDEARLARRRLAYEEVFLLELN 248

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
            ++  R + +    I   ++G   + + + +PF+ T+ Q  A  +IL  M+       +L
Sbjct: 249 LMISQRAEAQGASPIAHRIDGPAVRALAKALPFTLTEEQMVARDEILHRMAAPTSASHML 308

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GDVG+GKT VAL A+AAA ++G QA++MAP  +LA QH            +   ++T +
Sbjct: 309 LGDVGTGKTAVALFALAAATDSGNQALMMAPTEVLAAQHAASAGSLLDAAGVSWALLTAS 368

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
            P   R    E +++G   ++ GTHAL +  I      LV++DEQ RFGV+QR  L +K 
Sbjct: 369 TPTDERACIREGLSNGSLTVLFGTHALLEPDIAPRSCSLVVIDEQQRFGVEQRRTLREKG 428

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                L +TATPIPRTL L   G + +S +T++P  R    T ++  +R  E  E  +  
Sbjct: 429 PGCDYLTLTATPIPRTLALALYGGMTLSYLTKRPRNRAGTTTRVLVHSRRGEAYEIARDA 488

Query: 479 LSEGKKAYWICPQIE---------------------------------EKKESNFRSVVE 505
           L  G + + +CP I                                  +  + +  +  E
Sbjct: 489 LDAGHQVFVVCPLIGKPASDAQTKHTREAAADEEEGYAYARIAIEDEGDLHDDDIHAARE 548

Query: 506 RFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
               L E      S+ ++HGRM   +K + M+ F  G   +L+ATTVIEVGIDV +A+++
Sbjct: 549 EARFLQEKIFCGYSVGVLHGRMPATEKRASMERFAAGEVDVLVATTVIEVGIDVPNATVM 608

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           I+E+A+ FGL+QLHQLRGRVGRG+      L+     +  +  RL+ ++ TE+GF +AE 
Sbjct: 609 IVEDADRFGLSQLHQLRGRVGRGDVPGEVCLISSTK-NPVALERLAAMERTENGFELAEF 667

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           DL  R+EG+ILG +Q G     +       +++E A +DA+ ++  DPDL+     ++R+
Sbjct: 668 DLSLRREGDILGNRQHGASSLRLVNVIRDRAIVETAYRDARTLIEADPDLSQPDHAALRL 727

Query: 684 LL 685
            L
Sbjct: 728 EL 729


>gi|254756714|ref|ZP_05208743.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Australia
           94]
          Length = 539

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 197/532 (37%), Positives = 318/532 (59%), Gaps = 8/532 (1%)

Query: 159 VYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           +YS+   L+V   ++ I +AL      + E +   LL +       EA   +H P   +D
Sbjct: 1   MYSVKGKLTVKQMRRFIAQALKEYGDSIVEVLPDGLLSRYKLLPRYEALRALHFPTGQED 60

Query: 218 FEWTSPARERLAYDELLAGQIALL-LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
                 AR R  Y+E    Q+ +  L + + +   G    +  +  Q+ +  +PF  T +
Sbjct: 61  L---KQARRRFVYEEFFLFQLKMQTLRKMERENSKGTKKEIPSEELQEFIDALPFPLTGA 117

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q   + +I++DM+   RM R+LQGDVGSGKT+VA I + AA  A  Q  +M P  ILA+Q
Sbjct: 118 QRRVVDEIMKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQ 177

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY+ + +   +  + VE++T ++    RR+ L ++  G+  I++GTHAL QD + +++L 
Sbjct: 178 HYQSLAETFSHFGMKVELLTSSVKGVRRREILAKLEQGEIDILVGTHALIQDEVIFHRLG 237

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI DEQHRFGV QR  L +K  +P VL MTATPIPRTL +T+ G++D+S I E PAGRK
Sbjct: 238 LVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRK 297

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I+T     + +D V+  ++  +++G++AY ICP IEE ++ + ++ ++  + L  H+  
Sbjct: 298 VIETYWAKHDMLDRVLGFVEKEINKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQG 357

Query: 517 S--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              + ++HGR+S  +KE +M  F     ++L++TTV+EVG++V +A++++I +AE FGL+
Sbjct: 358 KCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLS 417

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG E S C+L+  P  S+    R+ ++  T DGF+++E+DL+ R  G+  
Sbjct: 418 QLHQLRGRVGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFF 476

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
           G KQSG+P+F +A        LE AR+DA  ++  +    + +  S+R  L 
Sbjct: 477 GSKQSGLPEFKVADMVHDYRALETARQDAALLVDSEAFWHNDQYASLRTYLD 528


>gi|38233726|ref|NP_939493.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199987|emb|CAE49656.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae]
          Length = 704

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 218/688 (31%), Positives = 335/688 (48%), Gaps = 51/688 (7%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QH 79
            K +   S+  +      T   DLL + P  +             E  I+T  G I   H
Sbjct: 16  AKEAKAFSRHFSF-----TTVEDLLQHFPRGYAAHGTGLAAEAAEEGDIITCVGTIVDTH 70

Query: 80  SSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
                     Y ++++DG    T  FF  +   +K V   G +   TGK+K  +N   + 
Sbjct: 71  EHPDRNGYSIYSVVISDGFTRSTATFF--RATWIKKVLTHGAQGIFTGKLKFFRNTPQLQ 128

Query: 140 HPHYIFHNSQDVNF------------------------PLIEAVYSLPTGLSVDLFKKII 175
           HP +     +                                 VY     +        +
Sbjct: 129 HPDFFLFPEKGKKATGTGGMQALSTTGELDDITDILVAMSYLPVYPAKKAIPTWRILGAV 188

Query: 176 VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
              L+  P + + + +        PS  +A   IH P    D         R+ YDE L 
Sbjct: 189 HNILTHTPHIADPLHEF--APHDLPSFDQALRGIHEP----DEHGPQHYITRIKYDEALT 242

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
             + + L R   ++    PI       +  +L ++PF  T+ Q + + +I  D++Q   M
Sbjct: 243 LALVMALRRADTQRRHAYPIPPTNDGLRAHMLSHLPFELTEGQHNVLTEISADLAQPTPM 302

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT--QNTQIIV 352
            R+LQG+VGSGKT+V+L+AM   ++ G Q V++AP  +LA QH   I +        I V
Sbjct: 303 SRLLQGEVGSGKTIVSLLAMLQVIDDGKQCVLLAPTEVLAAQHATSITQQLTNAGININV 362

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG++P   RRKAL  I  G A++IIGTHAL Q+ I+++ L L ++DEQHRFGV+QR 
Sbjct: 363 TLLTGSLPTEQRRKALFNIISGDANLIIGTHALIQEGIEFFDLALCVIDEQHRFGVEQRD 422

Query: 413 KLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
            L  +      PHVL+MTATPIPR++ +T+ GD+ +S + + P GR+PI + +I      
Sbjct: 423 HLRNQGRDTNTPHVLVMTATPIPRSIAMTAFGDLSVSTLKQLPGGRRPIHSYVIDHQHTT 482

Query: 470 ---EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
               + ER++  + +G + Y +CP+I++       +       L  +    IA++HG M 
Sbjct: 483 WTTRMWERIREEIDKGHQIYIVCPKIKDSGGVEETTHQLTTGILANY---RIAMLHGAMH 539

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             DK++ M +F  GT  +L+ATTVIEVGIDV +A++++I  +E+FG++QLHQLRGRVGRG
Sbjct: 540 PEDKDTTMKAFAAGTIDVLVATTVIEVGIDVPNATVMLIRESENFGVSQLHQLRGRVGRG 599

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              S C        +  ++ R++ +  T DGF +AE DL  R EG ILG +QSG     I
Sbjct: 600 GNESICFFHTTAQPTTPAHNRVTAVAATTDGFELAEIDLTYRHEGNILGTQQSGHTN-RI 658

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLT 674
                   L+E A  DA HI+T +P L 
Sbjct: 659 ISFIHDKDLIERANNDATHIVTHNPQLA 686


>gi|296130143|ref|YP_003637393.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296021958|gb|ADG75194.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 747

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 219/751 (29%), Positives = 359/751 (47%), Gaps = 75/751 (9%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           +PL  PL+       + +  L K+            DL+ ++P  + +      ++ +  
Sbjct: 5   DPLAVPLTRLN---ARTAKALGKL------GLATAGDLVRHYPRRYAEPGTLTDMASLRV 55

Query: 67  ERIVTITGYISQHSSFQL-QKRRPYKILLNDGTGEITLLFFY---RKTEMLKNVFFEGRK 122
              VT+   + + S     Q R   +  + DG   I L FF    +K E  +     GR+
Sbjct: 56  GEHVTVVAEVVRTSLRPTAQGRGLLQSTITDGHSRIELTFFASHVKKLEWRQGQLRPGRR 115

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQD---------VNFPLIEAVYSLPTGLSVDLFKK 173
              TG++   ++ + ++HP      + D         +       VY    G       +
Sbjct: 116 GLFTGEVSLYRDTLQLMHPECRLFGADDDAHDEDEALLEAGRPIPVYPAVAGFESWKVAQ 175

Query: 174 IIVEALSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
            +   L  L    +P+ +  DL  + + P++ EA  ++H P+   D+      R RL Y+
Sbjct: 176 AVRTVLDPLREEDVPDPVPPDLRARDALPTLLEALRLVHVPQDEADW---RRGRTRLRYE 232

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQ 290
           E L  Q  L   R +  ++  +                +PF+ T  Q +  ++I ++++ 
Sbjct: 233 EALVLQAELARRRARAAQQEAVARPPRADGLLDAFDARLPFTLTAGQRAVGEEIARELAA 292

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY------ 344
              M R+LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LA QH   +++       
Sbjct: 293 PRPMQRLLQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHARTLRRMLGDLAE 352

Query: 345 -----TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                       V ++TG++P A RR+A+   A G A I++GTHAL  D +Q+  L LV+
Sbjct: 353 GGFLGGAALATRVALLTGSLPTAARREAVLDAASGAAGIVVGTHALLSDQVQFADLGLVV 412

Query: 400 VDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           VDEQHRFGV+QR  L  KA   PH L+MTATPIPRT+ +T  GD++ S ++E PAGR  I
Sbjct: 413 VDEQHRFGVEQRDALRAKAGRTPHTLVMTATPIPRTVAMTVFGDLETSVLSEVPAGRAGI 472

Query: 459 KTVIIPIN---RIDEVIERLKVVLSEGKKAYWICPQIEEKKE------------------ 497
            T  +P +     D   +R++  +  G +AY +CP+I+                      
Sbjct: 473 TTHTVPADNTRWTDRTWQRVREEVERGGRAYVVCPRIDGDAPAGDAADEDGTDLVLEAEA 532

Query: 498 ----------SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKL 544
                        R+V++    L      +   + ++HGR+   +K+    +F +G   +
Sbjct: 533 TVGAPDAGARRPLRAVLDVAEELRARPDLTGIGVGVLHGRLGPEEKDRAFAAFASGATPV 592

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TTV+EVG+DV DA+++++ +A+ FG++QLHQLRGRVGRG     C+L+       ++
Sbjct: 593 LVSTTVVEVGVDVPDATVMVVLDADRFGISQLHQLRGRVGRGTRPGLCLLVSAAAPGTDA 652

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLEIARKDA 663
           +TRL  L  T DGF +A  DL+ R EG++LG  Q G      + +      ++  AR DA
Sbjct: 653 HTRLETLAATSDGFELAALDLELRHEGDVLGAAQHGTGSSLRLLRVTRDGDVIARARTDA 712

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           + ++ QD +L +       I   L    E F
Sbjct: 713 RALVAQDAELAAWPALRAAIEASLAGEREEF 743


>gi|328955650|ref|YP_004372983.1| ATP-dependent DNA helicase RecG [Coriobacterium glomerans PW2]
 gi|328455974|gb|AEB07168.1| ATP-dependent DNA helicase RecG [Coriobacterium glomerans PW2]
          Length = 727

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 226/699 (32%), Positives = 345/699 (49%), Gaps = 33/699 (4%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
           ++          R  DLL   P  ++D  +   I       + TI   + +    + + R
Sbjct: 36  AREQALRRLGIERVGDLLSRIPYRYLDFSHAHDIESAPIGEVSTIVARVDRVVERRPRPR 95

Query: 88  RPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFH 146
                I L D TG + + FF  K   +      G ++ V GKI+       M  PHY   
Sbjct: 96  LSVTEISLVDATGVLQVAFF--KQPWIARQIAIGDRLAVLGKIEFAYGFKQMTSPHYERL 153

Query: 147 NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAF 206
           +        I  V+ +  GLS    ++II  AL RL    + I  DL  +    S A A 
Sbjct: 154 D-PAATTGSILPVHKVSEGLSTAWMRRIISVALGRLGSFADAIPADLRARHGLMSAARAM 212

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
             IH P    + +     R RLAYDE+L  Q+AL L        +    ++     + + 
Sbjct: 213 RAIHFPVSFVERDAA---RRRLAYDEILILQLALRLRNDANLLGVRPSAHLVASHVRALR 269

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
            ++PF  T  Q+ A  +IL+DM+  +R M R+L GDVG+GKT VA I +A   +   QA 
Sbjct: 270 ESLPFQLTDEQQRASDEILRDMADPDRIMNRLLLGDVGTGKTAVACIGLACVADTETQAC 329

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP G+LA+QH            +   ++TG+   A R   + R+A G+  ++ GTHA+
Sbjct: 330 VMAPTGVLAEQHAARCGSILDKAGVTWALLTGSTTPAERADIVSRLADGKLCVLFGTHAV 389

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             + + +  L LV++DEQHRFGV QR  L  K     +L+MTATPIPRT+ L+  GD+D 
Sbjct: 390 LGEDVCFRHLSLVVIDEQHRFGVNQRNMLRAKGIGADLLVMTATPIPRTMALSVFGDLDT 449

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF----- 500
           S I  +P     + T ++  +  D  I  L+  ++ G++AY ICP +E   + +      
Sbjct: 450 SVIRHRPIAGAGVATRVLSESSRDIAIGALRDAIARGEQAYVICPLVEPTDQGDDLEEVF 509

Query: 501 ----------------RSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
                           R+V +    L +   T+ IA +HGRM   +K+ V+ +F++G   
Sbjct: 510 EDEDARDSGSSQAAPLRNVEQEAERLRQVLGTARIARLHGRMPPREKDRVITAFRSGEID 569

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLS 601
           +L++TTV+EVG+DV  A++++IEN E FGLA LHQLRGRVGRG    +C +L      L+
Sbjct: 570 VLVSTTVVEVGVDVGGATVMVIENGERFGLATLHQLRGRVGRGSTPGTCFILTRAAGKLN 629

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
             +  RL  L+ T DGF +AE DL+ R EGEILG++Q G         +    L+E A  
Sbjct: 630 VQARVRLRALERTSDGFALAEMDLRLRHEGEILGLRQHGGVSLRYVDFDADTDLIEWAHD 689

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           DA  +L     L S R   +R+ + + +Y + F+ +  G
Sbjct: 690 DAIELLGSSGGLRSARTVPLRLEV-IDRYGDVFKEVSGG 727


>gi|320533345|ref|ZP_08034038.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320134440|gb|EFW26695.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 752

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 219/753 (29%), Positives = 346/753 (45%), Gaps = 86/753 (11%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           VGK+ +  L+K             DLL   P  +        +  + E    TI   + +
Sbjct: 5   VGKRTAAQLAK------QGVETGADLLRLLPRRYDTWGELTDMRTLVEGEQATIQAQVVR 58

Query: 79  HSSFQLQKRR---PYKILLNDGTGEITLLFFYR--KTEMLKNVFFEGRKITVTGKIKKLK 133
            SS + +  R     +  + DG   + L+ F    +     +    G  + ++GK+   +
Sbjct: 59  ASSRRTRSGRVPALMEATVTDGASTMDLVQFGATGQMRARASQLAPGTTVLLSGKVGLHR 118

Query: 134 NRIIMVHP-----HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LP 186
            R  + +P       +    ++        +Y     L   L  K +   L +L    + 
Sbjct: 119 GRKQLSNPRLYVLDELDEAEREALLARPMPIYPGTEALPSWLVAKAVRIVLDQLEPGDVA 178

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + I ++L ++        A+  +H P   +D      AR RL ++E L  Q+AL   R  
Sbjct: 179 DPIPEELRREMGLVDAYTAYRWVHRP---EDSRQWKAARSRLRHEEALILQVALAQRRAH 235

Query: 247 FKKE----IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +             E  +   +   +P+  T  QE   ++I  D+++   M R+LQGDV
Sbjct: 236 HEATRTAVAWPVPETEDSLRADLDARLPYDLTAGQERVGREISADLARTVPMQRLLQGDV 295

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-----------I 351
           GSGKTLVAL AM   +  GGQA ++AP  +LA QH+  ++                    
Sbjct: 296 GSGKTLVALRAMLQVIGGGGQAALLAPTEVLAAQHHSSLEAVLGPMARLGMLGGAERATR 355

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V ++TG+ P A RR+ L  +A G+  I++GTHAL  D++Q   L LV+VDEQHRFGV QR
Sbjct: 356 VHLLTGSTPTAQRRQILADLAAGEPAIVVGTHALLSDTVQIPFLGLVVVDEQHRFGVAQR 415

Query: 412 LKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
             L +          ++  PH+L+MTATPIPRT+ +T  GD+  S + E PAGR  + T 
Sbjct: 416 DALRERGGLTDPATGQSHTPHLLVMTATPIPRTIAMTVFGDLATSVLDELPAGRSAVPTH 475

Query: 462 IIPINRIDEV---IERLKVVLSEGKKAYWICPQIEEKKESNF------------------ 500
           ++P +RI  V     R    ++ G + Y +CP+IE   E                     
Sbjct: 476 LVPWSRISWVEGIWRRAAKEVASGGRVYVVCPRIEVDDEPRQVQTEGAAAFETEDGQGPE 535

Query: 501 ------------------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                                  R +         + ++ GRMS   K + M  F +G  
Sbjct: 536 PLTDEGSGSHPDRPLAAVEEWRRRLDGEPALEGIGVGVLTGRMSSEGKAASMADFASGAT 595

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L++TTVIEVG+DV +AS+++I +A+ FGL+QLHQLRGRVGRG   S C+ +    +  
Sbjct: 596 PVLVSTTVIEVGVDVPEASMMVILDADRFGLSQLHQLRGRVGRGSRPSLCVAVTGAEVGS 655

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARK 661
            ++ RL    +T DGF +AE DL+ R EG++LG  QSG      + +      L+  AR+
Sbjct: 656 TAFHRLKAFASTTDGFALAEADLELRSEGDVLGASQSGRASGLDLLRVTRDARLIATARR 715

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
            A+ I+  DP L+  R  +  I+  L + ++AF
Sbjct: 716 QAERIVAADPQLSEHRALAAAIVERLDEESQAF 748


>gi|11992017|gb|AAG42404.1|AF300471_7 ATP-dependent DNA helicase RecG [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 676

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 242/650 (37%), Positives = 371/650 (57%), Gaps = 18/650 (2%)

Query: 38  ETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDG 97
            TR  DLLFY PS  + R     I+        T+   ++         R P++IL  D 
Sbjct: 34  VTRLKDLLFYLPSGQMRRVKSDHINAKDVG--ATVILTLTAKEYRHPSGRGPFRILAEDP 91

Query: 98  TG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156
            G +I LL+F   +   + +   G    V+GK+   + ++ +VHP  I   S++ + PL 
Sbjct: 92  FGGQIQLLWFGNHSSWARKLMPIGETRLVSGKLDIYQEQLQIVHPSEIVPLSEENSIPLE 151

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
           E +Y L  GL+     K++ +A  + P LPEWIE  LL+K  +PS  EA   IH      
Sbjct: 152 ETLYPLSDGLTHRRIGKLVRQAWEKSPDLPEWIEPSLLKKHQWPSWQEAVERIHQHPDD- 210

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
                  A+ R+ YDE+ A Q+AL L+R   +++ G P+  +G +   +  N+PF PT +
Sbjct: 211 -----RAAKLRIGYDEIFANQLALKLIRAANRRKRGFPLKGDGHLRDAL--NLPFQPTGA 263

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  ++ +I  DM Q + MLR+LQGDVGSGKT VAL ++  A EAG Q  ++AP  ILA+Q
Sbjct: 264 QRRSLAEIEGDMQQASPMLRLLQGDVGSGKTWVALHSLLIAAEAGYQGALLAPTEILARQ 323

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+E + +      + + ++TG      R   L  +A G  H+++     F+  +     +
Sbjct: 324 HFETLSQQLAGLPVNIALLTGRDKGKLRESTLMGLADGSIHLLVVPMPFFRKRLTTKIWV 383

Query: 397 LVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            +++      G    + L +KA   PH+L+MTATPIPR+L+LT+ G++D+S++ E P GR
Sbjct: 384 SLLLMNSIASGSPNGMMLAEKAIHTPHLLVMTATPIPRSLMLTAHGEMDVSRLDEMPPGR 443

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI------EEKKESNFRSVVERFNS 509
           +P++T +I   +I E+I  L   ++EG ++YW+CP +      E+   +   +  +RF+ 
Sbjct: 444 QPVETRVISSRKIPEIIASLGRHIAEGGQSYWVCPAVGEADIEEDFSPNAIAAAEQRFSL 503

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +HF   + ++HG+M   +K+ VMD F  G   +L+ATTVIEVG++V +A+++II+ AE
Sbjct: 504 LQQHFGKKVGLVHGKMKPAEKDKVMDDFAAGKIAVLVATTVIEVGVNVPNATLMIIDQAE 563

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            FGLAQLHQLRGRVGRG   S C+LL    L+  +  RL++++   DGF +AEEDL+ R 
Sbjct: 564 RFGLAQLHQLRGRVGRGGGRSICLLLRSEELTSVARERLALIRECNDGFRLAEEDLRLRG 623

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
            GEILG KQSG   F IA PE    LL IA  DA+ ++ +D  L+  RGQ
Sbjct: 624 SGEILGTKQSGESHFQIASPEDLSELLPIANDDARLLVDRDGGLSGERGQ 673


>gi|325107645|ref|YP_004268713.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
 gi|324967913|gb|ADY58691.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 701

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 218/701 (31%), Positives = 356/701 (50%), Gaps = 26/701 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL   RGVG   +  LS +            DLL+Y P   +D     K+SE+++++
Sbjct: 18  LDRPLRYVRGVGPARAALLSNL------GLETVSDLLWYLPKDVLDLSELSKVSELTDDK 71

Query: 69  IVTITGYISQHSSFQLQKRRPYKILL-NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           I T+ G +    +  L + R     +     G I  ++F +    +++       +    
Sbjct: 72  IHTVRGQVLDVETKMLLRGRNLTAAVMRAEDGLIRGVWFNQ--PWMRSKLNTEAYVLWAA 129

Query: 128 KIKKLKNRIIMVHPHYIFHNSQ-DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP-VL 185
           K K    R  M +P   + ++  D     +   Y L  GL ++  +++I   L  +P  +
Sbjct: 130 KPKFRDGRWEMSNPRLQWLDADADDAVGEVLPKYGLTEGLKLEGLRRMIAGVLELIPGHV 189

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            + + +        P + E+   +H P      E    AR R+ ++E L  Q+ L L R+
Sbjct: 190 EDVLPERFRVHYKLPGLEESLKQLHRPDT---LEQYQQARRRIVFEEQLTFQLGLALRRR 246

Query: 246 QFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
             +     P I +  K+  +I R  PF  T  QE AI +I  D++    M R+LQ DVG+
Sbjct: 247 VRQTTERAPAIPITPKVDARIRRLFPFELTNGQEQAIAEITADLALTQPMHRLLQADVGA 306

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VA  AM AAV AG QA++MAP  +LA+QH + +    +++++   ++TG +  A R
Sbjct: 307 GKTVVAAYAMLAAVAAGYQAILMAPTELLARQHKQTLDAALKHSRVKRGLLTGTLTAAER 366

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R  L+ IA G+  +++GT AL Q  + +++L L ++DEQH+FGV QR   T    APHVL
Sbjct: 367 RGMLDDIASGKMQLVVGTQALIQKDVNFHQLGLAVIDEQHKFGVAQRSSFTGSTIAPHVL 426

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT-VIIPINRIDEVIERLKVVLSEGK 483
           +MTATPIPR+L LT  GD+D+S + + P GR+ + T  +      ++    ++  L+ G+
Sbjct: 427 VMTATPIPRSLCLTQYGDLDLSVMKDLPPGRQSVVTSRVTTPAVANKAWSFVQEKLTGGR 486

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           +AY +CP ++  +        + +  + + F    + ++HG+M    ++ VM  F+ G  
Sbjct: 487 QAYVVCPYVDSTEADAPAGAEQTYREMQQRFPDLKVGLVHGQMDRRQQQLVMADFREGEI 546

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+AT+VIEVG+DV +AS+++I +A  FGL+QLHQLRGR+GRG     C L      S 
Sbjct: 547 QMLVATSVIEVGVDVPNASLMVILDAHQFGLSQLHQLRGRIGRGSFQGYCFLFSEAENS- 605

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  RL  L+ T +GF IAE D   R  G +LG +Q G            + LL   R  
Sbjct: 606 EAQERLRALEETNNGFEIAEADFALRGPGNVLGTEQHGSLPLRSNLLTTDEKLLLETRGA 665

Query: 663 AKHILTQ---DPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           A+ ++ +   D D  +    +I     L +Y +  Q  R G
Sbjct: 666 AQRMVDRGTIDKDEFAPLKNAI-----LDRYGDQLQLPRTG 701


>gi|225629771|ref|ZP_03787715.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591375|gb|EEH12471.1| ATP-dependent DNA helicase RecG [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 551

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 232/545 (42%), Positives = 322/545 (59%), Gaps = 7/545 (1%)

Query: 54  DRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEML 113
           DR     +S+       T    + +H S   + R PYKI++   +  I ++FF    + L
Sbjct: 2   DRSKL--LSDARVGEFTTFIAKVYEHQSPTFRGR-PYKIVVESESQYIFIVFFNYSVKYL 58

Query: 114 KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN-SQDVNFPLIEAVYSLPTGLSVDLFK 172
             +F  G  + ++GK++K      + HP Y+  + +Q      IE VY L  G++     
Sbjct: 59  YKLFPIGANVIISGKLEKFAEHWQITHPDYVSLDINQFKEIACIEPVYQLCRGITNKRIG 118

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            II   L  LP LPEWI+  L+++K + S  E+   +H P    + E     R+RLAYDE
Sbjct: 119 NIISSNLKELPDLPEWIDDTLIKQKKWLSWRESIIKLHRPSSLAEAE---VCRKRLAYDE 175

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           L A Q+AL L RK   KE G    +  K  +++L  + F  T  Q  AI +I +    K 
Sbjct: 176 LFAYQLALKLARKNHVKERGREFIILSKYKEQVLNELSFQLTNDQTRAIDEISERQKSKY 235

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           RM+ +LQGDVGSGKT+VAL AM   VE   QA +MAP  ILA+QHY +I++    T I V
Sbjct: 236 RMISLLQGDVGSGKTVVALFAMINVVENNMQAALMAPTTILAEQHYNWIEEVLSCTDIKV 295

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG   +  R+  +  +A G  +I+IGTHALFQ ++ +  L L ++DEQ RFGV QR 
Sbjct: 296 ALLTGKTSRKERKIIMNELASGVLNIVIGTHALFQANVTFKNLGLAVIDEQQRFGVMQRN 355

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           +L  K     +L +TATPIPRTL     GD++ S + EKP  R PIKTV + I+R+ +VI
Sbjct: 356 RLVGKGENADILFVTATPIPRTLQQAMYGDVECSILKEKPKSRLPIKTVTMNISRVPDVI 415

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           E+LK  ++ G+KAYWICP IEE +E+N  +   RF  L + F   + IIHG+++   K+ 
Sbjct: 416 EKLKGAINRGEKAYWICPYIEENEETNIAAAEMRFQELQKTFLDKVGIIHGKLTQEQKDQ 475

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM SFK     LL+ATTVIEVGIDV DA+I+IIE AE FGL+QLHQLRGRVGRG + S C
Sbjct: 476 VMFSFKRNEFSLLVATTVIEVGIDVPDATIMIIEYAEQFGLSQLHQLRGRVGRGNKPSFC 535

Query: 593 ILLYH 597
           +LLY 
Sbjct: 536 VLLYD 540


>gi|119717509|ref|YP_924474.1| ATP-dependent DNA helicase RecG [Nocardioides sp. JS614]
 gi|119538170|gb|ABL82787.1| ATP-dependent DNA helicase RecG [Nocardioides sp. JS614]
          Length = 750

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 220/720 (30%), Positives = 362/720 (50%), Gaps = 74/720 (10%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
           KK      ++            DLL + P  ++      +I E+ E  ++T+ G I+   
Sbjct: 17  KKRKAIEERL------GLRTVGDLLRHFPRRYVKTGELTRIDELHEGELLTVVGQITSSK 70

Query: 81  SFQLQKRRPYK------ILLNDGTGEITLLFF----YRKTEMLKNVFFEGRKITVTGKIK 130
               + RR ++      + +        +  F    +      +     GR+    GK+ 
Sbjct: 71  LNTYEDRRTHRPAYRVDVTVRTDGPSFRISMFAKTRHMGEWQQEKRMPVGRRGIFVGKVS 130

Query: 131 KLKNRIIMVHPHYIFHNSQDVN--------FPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             +    + HP  +   + D +           +  +Y L  G+     ++ +  AL+ +
Sbjct: 131 SFRGNWQLTHPQVVLFGTPDEDAAQLSLDAIGELYPIYPLTKGVDSWDLQRAVAFALTMV 190

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             +P+ +  ++ ++     +  A   IHNP    D    + A+ R  ++E L  Q+ L  
Sbjct: 191 DDVPDLVPPEVRERHGLLDVRTALRHIHNP---DDRAQITSAQRRFRFEEALVTQLVLAR 247

Query: 243 MRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
            R+  ++         +G +       +PF  T  Q     +I  D++Q + M R+LQG+
Sbjct: 248 RRRAVRELGARARTGEDGGLLAAFDARLPFELTAGQREIGAEIEADLAQPHPMNRLLQGE 307

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI----------- 350
           VGSGKTLVAL AM   V++GGQA ++AP  +LAQQH+  I     +              
Sbjct: 308 VGSGKTLVALRAMLRVVDSGGQAALLAPTEVLAQQHHRSITAMLGDLAGGGMLGGAAEAT 367

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            VE++TG+M +A R   + R+A G+A I+IGTHAL ++ + +  L LV+VDEQHRFGV+Q
Sbjct: 368 NVELLTGSMTKAQRTAPMSRLASGEAGIVIGTHALLEEKVAFADLGLVVVDEQHRFGVEQ 427

Query: 411 RLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI---- 465
           R  LT KA T PHVL+MTATPIPRT+ +T  GD++ S +TE PAGR PI+T ++P+    
Sbjct: 428 RAALTDKAGTPPHVLVMTATPIPRTVAMTVFGDLETSTLTELPAGRAPIQTNVVPLAEQP 487

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIE----EKKESNFRSVV----------------- 504
           + +  V ER++  + +G++AY +CP+I     E+ E++ +S+                  
Sbjct: 488 HWLPRVWERVREEVDKGRQAYVVCPRITGDESEQGETDAQSIYVDLDEDGNILAPPGASV 547

Query: 505 ------ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                 E    L +   +   +  +HG+M+  DK++VM +F  G   +L++TTVIEVG+D
Sbjct: 548 TLNAVEEVAAQLADGPLAGLRVERLHGKMAPEDKDAVMRAFAAGGVDVLVSTTVIEVGVD 607

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +A+ +++ +A+ FG++QLHQLRGRVGRG     C+L+        +  RL+ +  T D
Sbjct: 608 VANATAMVLLDADRFGVSQLHQLRGRVGRGGHPGICLLVSWAEQETPARERLAAVAATTD 667

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           GF ++  DL+QR+EG++LG  QSG    L   +    +  +  AR  A  +L  DPDL  
Sbjct: 668 GFELSRVDLEQRREGDVLGRSQSGYRSSLHDLRVLRDEKTIVEARGAALDLLEADPDLAG 727


>gi|152965336|ref|YP_001361120.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
 gi|151359853|gb|ABS02856.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
          Length = 759

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 233/759 (30%), Positives = 362/759 (47%), Gaps = 74/759 (9%)

Query: 6   LNPLFAPLST-FR-GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
           ++ L APLS+    G G       +K ++ G        DLL++ P  + DR     I +
Sbjct: 1   MDELDAPLSSRLPRGKGNSKKANPAKFLSEG-LGLETVRDLLWHLPRRYADRGTLTPIRD 59

Query: 64  ISEERIVTITGYISQHSSFQLQKRR---PYKILLNDGTGEITLLFFYRKTEM---LKNVF 117
           + E    TI   + ++   Q  + +      + L DG   +T+ FF +        K   
Sbjct: 60  LVEGENATILAQVVKYGEPQRMRAKDGVRLVVTLGDGRDTLTMTFFAKFAGQFAHQKADL 119

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI---EAVYSLPTGLSVDLFKKI 174
             G  +  +GK+ K ++   + HP Y      +     +     +Y         L ++ 
Sbjct: 120 VPGALVLASGKVSKFQDVWQLSHPDYETLEDPEDGVDAVNRPIPLYPASKAAPNWLVRQS 179

Query: 175 IVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
           + + L  L   LPE++  +++          A   +H PR   + E     R RL Y+E 
Sbjct: 180 VAQLLDGLEGQLPEFLPAEVVAGADLLDPLAALRAVHAPRDEAELE---AGRHRLRYEEA 236

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
              Q AL L R    ++  +        IA    + +PF  T SQ +  ++I  D+++ +
Sbjct: 237 FVLQTALALRRASTARQRAVARTASPDGIAAAFDQRLPFPLTGSQRAVGEEIAADLARPH 296

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT---- 348
            M R+LQGDVGSGKTLVAL AM   V+ GGQA ++AP  +LA QH   I     +     
Sbjct: 297 PMQRLLQGDVGSGKTLVALRAMLTVVDGGGQAALLAPTEVLAAQHLRSITAMLGDLAGAG 356

Query: 349 -------QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
                     V ++TG+M    RR AL   A G+A I+IGTHAL Q+ +Q+  L  V+VD
Sbjct: 357 TFGAHERATKVVLLTGSMGAPARRAALLAAASGEAGIVIGTHALLQEHVQFADLGFVVVD 416

Query: 402 EQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           EQHRFGV+QR  L  K    PH+L+MTATPIPRT+ +T  GD++ S +TE P GR  ++T
Sbjct: 417 EQHRFGVEQRDALRAKGNGIPHLLVMTATPIPRTVAMTLFGDLETSVLTELPPGRADVQT 476

Query: 461 VIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR---------------- 501
           V++P +R   ID   +R+    + G+++Y +C +I+   E                    
Sbjct: 477 VVVPQDRPAWIDRTWQRIAEEAALGRQSYVVCARIDTDDEGGEDGTPPEDGPGEEPAPDD 536

Query: 502 -------------------------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
                                     VVE   +          ++HGR+   +K+ VM  
Sbjct: 537 ALFEEPRPRGGKPGRPKPRPAAAVSQVVEVVRTHPATAGLRTEVLHGRLPPAEKDDVMSR 596

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   +++ATTV+EVG+DV +AS++++ +A+ FG++QLHQLRGR+GRG    +C+LL 
Sbjct: 597 FAAGEVDVVVATTVVEVGVDVPNASVMVVVDADRFGISQLHQLRGRIGRGGLPGTCLLLS 656

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSL 655
                  +  RL+ L  T DGF +A  DL+QR+EG++LG  QSG      +        L
Sbjct: 657 GASEGSPAGQRLAALARTRDGFELARLDLEQRREGDVLGAAQSGERSSLQLLGVLRDAEL 716

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           +  AR  A  ++  DPDL++ R  +  +   +    EAF
Sbjct: 717 VAHARAAAVTLVAADPDLSAHRPLAAAVAARVSGDTEAF 755


>gi|118617568|ref|YP_905900.1| ATP-dependent DNA helicase RecG [Mycobacterium ulcerans Agy99]
 gi|118569678|gb|ABL04429.1| ATP-dependent DNA helicase RecG [Mycobacterium ulcerans Agy99]
          Length = 743

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 217/740 (29%), Positives = 356/740 (48%), Gaps = 72/740 (9%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID--RHYRPKISEISEERIVTITGYIS 77
           G K +  L +             DLL ++P S+++          +      +TI   I+
Sbjct: 13  GAKAAEALDEE-----FGIRTVDDLLRHYPRSYVEGGERRGTDDEQPEVGEHITIVDVIT 67

Query: 78  QHSSFQLQ---KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
           +  SF ++   +R   +I L  G  ++T  FF    + +K    +  ++ ++G++   K 
Sbjct: 68  ETKSFPMKKTPRRLCLRITLGSGRNKVTATFFN--ADYIKKGLTKNTRVMLSGEVGYFKG 125

Query: 135 RIIMVHPHYIFHNSQDVNFPLIE--------------------------AVYSLPTGLSV 168
            + + HP ++  +S D      +                           +Y   T +  
Sbjct: 126 VMQLTHPAFLILDSPDGQHHGTKSLKSIADASQAISGELAMEEFERRFFPIYPASTKVQS 185

Query: 169 DLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
               K + + L     + E +   L  +    S  +A   I     A+D      AR RL
Sbjct: 186 WDIFKCVRQVLEVFDPVDEPLPAALRAEHGLISEDDALRAI---HLAEDESEREQARRRL 242

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQD 287
            +DE +  Q AL+  R     E G P        A ++L  +PF PT  Q   + ++   
Sbjct: 243 TFDEAVGLQWALVARRHGELSESGPPAPARSDGLAAELLARLPFEPTAGQREVLDELSDG 302

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           ++    M R+LQG+VGSGKT+VA++AM   V+AG Q  ++AP  +LA QH   I      
Sbjct: 303 LAATRPMNRLLQGEVGSGKTIVAVLAMLQMVDAGYQCALLAPTEVLAAQHLLSINDVLGP 362

Query: 348 TQI-----------IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
             +            V ++TG+M    +++    IA GQ  I+IGTHAL QD+++++ L 
Sbjct: 363 LAMGGQLGGADNATRVALLTGSMTAGQKKQVRAEIASGQVGIVIGTHALLQDAVEFHNLG 422

Query: 397 LVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E P 
Sbjct: 423 MVVVDEQHRFGVEQRDQLRAKAPAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPR 482

Query: 454 GRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER--- 506
           GR+PI T +I +       D   +R+   ++ G++AY + P+I+E  ES+      R   
Sbjct: 483 GRQPITTNVIFVKDKPAWFDRAWQRIVEEVAAGRQAYVVAPRIDESDESDKAENGARPSA 542

Query: 507 -----FNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                ++ L     +   +A++HGR+S  +KE+ M +F+ G   +L+ TTVIEVG+DV +
Sbjct: 543 TAVGLYSRLQAAELAGLRLALMHGRLSADEKEAAMAAFRAGNVDVLVCTTVIEVGVDVPN 602

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A+++++ +A+ FG++QLHQLRGR+GRGE  S C+L         +  RL  +  T DGF 
Sbjct: 603 ATVMLVMDADRFGISQLHQLRGRIGRGEHPSLCLLASWVSPGSPAGRRLRAVAETMDGFD 662

Query: 620 IAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
           +AE DLK+R+EG++LG  QSG      +     H   +E AR        Q         
Sbjct: 663 LAELDLKERREGDVLGRNQSGKAITLRLLSLAEHRVFIEAARDFCNQAYQQSTGGGGP-H 721

Query: 679 QSIRILLYLYQYNEAFQFIR 698
             + ++   +   +   ++ 
Sbjct: 722 PGLALMAARFTNTDRIDYLD 741


>gi|227548103|ref|ZP_03978152.1| possible DNA helicase RecG [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079829|gb|EEI17792.1| possible DNA helicase RecG [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 700

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 215/680 (31%), Positives = 351/680 (51%), Gaps = 44/680 (6%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L K +   +       DLL ++P  ++      ++    E   ++I G +     
Sbjct: 17  KQARALHKHLGIESCG-----DLLRHYPRKYLHYGAGSELEGTREGDTISIIGRVIDTHF 71

Query: 82  FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
              + +  YKI ++DG   I   FF   +        EG+++ +TGK+   ++   + HP
Sbjct: 72  IPREGKPIYKITVDDGRYRIGATFF--GSRFAMRALTEGKRVMLTGKLSFFRSAPQLQHP 129

Query: 142 HYIFHNSQDVNFPLIE------------------AVYSLPTGLSVDLFKKIIVEALSRLP 183
            ++  +        ++                   +Y   + +S       +   L  LP
Sbjct: 130 DFVLLDGPTQATGALKQLSHFGDLEEILSGREWLPLYPATSKVSTWTIMGAVHAVLKTLP 189

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            + E +         + S+ +A   IH P  A        AR RL Y+E     + + + 
Sbjct: 190 PVEEPL---GFTPIGYSSLNKAIREIHEPGPA----GPDAARRRLKYEEASGIALVMAVR 242

Query: 244 RKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           R     E    +    G    ++L N+PF  T  Q+  + DI  DMS+   M R+LQG+V
Sbjct: 243 RADRLLEDATALPPVRGGQFDQLLGNLPFPLTDGQKQVLADITADMSRPRPMSRLLQGEV 302

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII--VEIITGNMP 360
           GSGKT+V+L+AM  AV+ G Q  ++AP  +L  QH   +++      +   V  +TG+M 
Sbjct: 303 GSGKTIVSLLAMLQAVDNGSQCALLAPTEVLTMQHARSLQETALRAGLTTSVVALTGSMT 362

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418
            A R++AL  I  GQA I++GTHAL Q+S+++++L LV+VDEQHRFGV+QR  L  K   
Sbjct: 363 AAQRQEALLNIVSGQADIVVGTHALIQESVEFFRLGLVVVDEQHRFGVEQRDALRAKGGD 422

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERL 475
           + PHVL+MTATPIPRT+ +T  GD++IS + E P GRKPI++ ++P  +   ++   E++
Sbjct: 423 SPPHVLVMTATPIPRTMAITVFGDLEISTLRELPGGRKPIQSSVVPQFKSAWVERGWEKI 482

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +     G++AY +CP+I+        + +    S  E     + ++HGRM   DK++VM 
Sbjct: 483 REEAQAGRQAYIVCPRIDGDGGVLITAAM---LSATEFADLDVGVLHGRMKGEDKDAVMK 539

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F  G   +L++TTVIEVG+DV +A+++++  +EHFG++QLHQLRGRVGRG + S C+  
Sbjct: 540 DFAAGAIDVLVSTTVIEVGVDVPNATVMMVRESEHFGVSQLHQLRGRVGRGGKQSLCLFH 599

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDS 654
                   ++ R+  +  T DGF +AE DL+ R+EG+ILG+ QSG      +        
Sbjct: 600 TLADEDSQAFERVCQVAATADGFALAELDLRTRQEGDILGVNQSGSHRTLRLINLVDDFD 659

Query: 655 LLEIARKDAKHILTQDPDLT 674
           +++ A  DA+  + Q P L 
Sbjct: 660 IVQRAYDDAERFVEQHPQLA 679


>gi|308177222|ref|YP_003916628.1| ATP-dependent DNA helicase RecG [Arthrobacter arilaitensis Re117]
 gi|307744685|emb|CBT75657.1| putative ATP-dependent DNA helicase RecG [Arthrobacter arilaitensis
           Re117]
          Length = 729

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 226/691 (32%), Positives = 353/691 (51%), Gaps = 52/691 (7%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           GKK S  L K         T   + L++ P  +++      I+E+  +  VT+   +   
Sbjct: 19  GKKNSAALEK-----AFGYTTVGEFLWHFPRRYVEVGELTPIAELPFDEHVTVVAQVVNV 73

Query: 80  SSFQLQKRR--PYKILLND----GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
           S  Q+  RR   +++ ++D    G  E+ + FF       +     G     +GK+   +
Sbjct: 74  SQRQMHSRRGFIFEVTVSDELSAGGQELKMTFFNGYQA--RTDLHIGTIAMFSGKVSWYQ 131

Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPEWIEK 191
           + + +  P Y   +      P    +Y     +     + ++   L +     +PE++  
Sbjct: 132 DYLQLSQPEYAILDEASQADPRPIPIYPASAKMPNKRIRDLMGLLLEQFTDQNIPEFLPT 191

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           ++L  + +P   +AF   H P   K+ ++   AR+R A++E    Q+AL    +Q   + 
Sbjct: 192 EVLSSRHYPVRHQAFLDRHFP---KEIKYAYVARQRFAFEEAFLLQLALGERGRQLGAQK 248

Query: 252 GIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            I      G++A K    +PF  T+ Q    + I  D+ Q + M R+LQG+VGSGKT+VA
Sbjct: 249 AIARPPAPGRLAAKFDAQLPFRLTEDQVLVGQHISADLEQSHPMHRLLQGEVGSGKTIVA 308

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY----------TQNTQIIVEIITGNMP 360
           L A+   ++AGGQA ++AP  +LA QHY  I+K            +     V ++TG+  
Sbjct: 309 LRAILQVIDAGGQAALLAPTEVLAAQHYASIRKMLGNLAEPGLFGEGEGTGVALLTGSAK 368

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-- 418
            A RR+AL  IA G+  +IIGTHAL  D +Q+ +L LV+VDEQHRFGV+QR  L  KA  
Sbjct: 369 TAQRREALLGIASGETGLIIGTHALLSDQVQFAELGLVVVDEQHRFGVEQRDALRAKAGD 428

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERL 475
           T PH L+MTATPIPRT+ +T  GD++ S I   PAGR PI+T I+P+      D +  R+
Sbjct: 429 TVPHTLVMTATPIPRTVAMTVFGDLETSTIKRLPAGRAPIQTHIVPMQLSGFRDRLFSRI 488

Query: 476 KVVLSEGKKAYWICPQIEEKKE-----------------SNFRSVVERFNSLHEHFTSSI 518
              + +G + Y +CP+I +                     +  ++ E    + E      
Sbjct: 489 TEEVQKGHQVYVVCPRISDTTAEQGVLLSTYDDSSVGQTMSVEAMQEMLAGMPEFAGIRT 548

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +H ++   DK+  MDSF  G   +LI+TTVIEVG+DV +A++++I +AE FG++QLHQ
Sbjct: 549 QTLHSQLDTTDKQETMDSFARGEIDVLISTTVIEVGVDVHNATLMVIMDAERFGISQLHQ 608

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG    +C++         S  RL  +++T DGF +AE DL +R+EG ILG++Q
Sbjct: 609 LRGRVGRGGLPGTCLMTTWLDADHPSVGRLKTIESTTDGFELAEADLAERREGNILGVQQ 668

Query: 639 SGMP-KFLIAQPELHDSLLEIARKDAKHILT 668
           SG              SL+E AR D   +L 
Sbjct: 669 SGSKSSLRELSIIKDRSLIEQARADVGLVLA 699


>gi|148244970|ref|YP_001219664.1| ATP-dependent DNA helicase RecG [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326797|dbj|BAF61940.1| ATP-dependent DNA helicase RecG [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 688

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 225/674 (33%), Positives = 349/674 (51%), Gaps = 17/674 (2%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   +    G+G K    L+ I             LLF  P+ + D+    K++++ 
Sbjct: 1   MYQLSNSIIILDGLGPKTQQKLNAI------GIFNLEHLLFQLPTHYQDKTKLAKLNQVQ 54

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKIT 124
               V I   I          ++     L+D     + L FFY      K  F  G  I 
Sbjct: 55  IGDEVLIQLTIKYTEQVSTH-QKQLLCYLSDSNHRNLLLRFFYFNQ-YQKQNFIRGDIIQ 112

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNF--PLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             G+IK  +N + + +P Y   +    N     +  +Y L   +     KK I  AL  L
Sbjct: 113 CFGEIKMGQNSLEIHNPEYRLISKGQANLLEKTLSPIYPLTANIRQAQMKKWIDTALEVL 172

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR----ERLAYDELLAGQI 238
                +     L   + P++ +A N +H+P+   + +  +  +    +RL  +EL   ++
Sbjct: 173 QQSDLFDNFKNLTNNTMPTLKQALNTLHHPKVDDNIKQIANFKHFSQQRLIIEELCTQRL 232

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +LL ++ + K +I     ++ ++ QK L  + F  T++Q+S I DI  D+S  + MLR+L
Sbjct: 233 SLLKLKSKRKSKISNIFKIKNRLTQKALDTLKFQLTQAQQSCINDINSDLSSNHPMLRLL 292

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT++A+ A   A+E G Q  I+AP  ILA QH +    Y     I +  +T +
Sbjct: 293 QGDVGSGKTIIAVFACLQAIENGFQTTIIAPTEILAAQHLQGFSNYLTPLGIDIAFLTDS 352

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK- 417
                + K LE+I    A IIIGTH L Q  + + KL LVI++EQH+FGV Q L L QK 
Sbjct: 353 QSAIQKSKQLEKINSDTARIIIGTHVLLQTKVVFDKLGLVIINEQHKFGVHQCLSLVQKS 412

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              PH L++TATPIP++L ++   D+D S I E P GR P  T+++  ++ ++VIE++K 
Sbjct: 413 HNTPHQLVITATPIPKSLTISVYADLDYSIIDELPTGRTPTNTIVLGNDKKNKVIEKIKQ 472

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDS 536
           V + G + YW+C  IEE +     S     N L ++    ++ +I+GRM    K +++  
Sbjct: 473 VCNIGNQVYWVCTLIEESEVLRTESATNTHNYLKKNLEGLTVVLINGRMQKYKKSNIIAQ 532

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G   +L+ATT IE G+++++ S+++IEN+E  GL QLHQLR RVGR  + S CIL+Y
Sbjct: 533 FLKGEIDVLVATTEIEAGVNIINTSLLVIENSERLGLTQLHQLRSRVGRSLDASICILMY 592

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             PLS N+  RL +L+ T DGF IA +DL+ R   EILG +Q G+    IA       LL
Sbjct: 593 QAPLSYNAIERLDILRKTNDGFKIALKDLELRGPSEILGTQQIGITNMKIANIVRDRYLL 652

Query: 657 EIARKDAKHILTQD 670
           +  +  +K  L  D
Sbjct: 653 KQVQSYSKQFLKLD 666


>gi|227495861|ref|ZP_03926172.1| DNA helicase RecG [Actinomyces urogenitalis DSM 15434]
 gi|226834618|gb|EEH67001.1| DNA helicase RecG [Actinomyces urogenitalis DSM 15434]
          Length = 758

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 220/758 (29%), Positives = 352/758 (46%), Gaps = 92/758 (12%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           GK+ +  L      G        DLL   P  +        +S + E   VT+   + + 
Sbjct: 6   GKRTAEQL------GRQGVETAGDLLRLLPRRYDTWGDLTDLSSLVEGEQVTVQAQVMRS 59

Query: 80  SSFQLQKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKITVTGKIKKLKN 134
           ++ + +  RP    + L+ DG  ++ ++FF            F  G  + ++GK+     
Sbjct: 60  AARRARGGRPPALMEALVTDGASKMDVVFFGAAGLMAHYAEQFSPGTTVLLSGKVGIRHG 119

Query: 135 RIIMVHPHYIFHNSQDVN-----FPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
              +  P +   +  D             +Y     L      K +   L +L    +PE
Sbjct: 120 HRQLASPRFQVLDELDEAERAELLARPMPIYPATESLPSWRVAKAVRTVLDQLTEQDVPE 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            +  ++ Q         A+  +H P   +D E    AR+RL Y+E    Q AL+  R   
Sbjct: 180 PLPPEVRQAHDLVGALTAWRWVHTP---EDAEQWRAARKRLRYEEAFVLQSALVQRRAAH 236

Query: 248 KKEIGI---PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +        P    G +   +  ++P++ T+ QE   +++ + ++    M  +LQGDVGS
Sbjct: 237 EATHAAVAWPRPGAGSLRASLDASLPYTLTRGQERVGRELEEALASTVPMQTLLQGDVGS 296

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-----------IVE 353
           GKTLVAL AM   V  GGQA ++AP  +LA QH   +++                   V 
Sbjct: 297 GKTLVALRAMLQVVGGGGQAALLAPTEVLAAQHRSSLEQLLGPLARAGMLGGASQATQVL 356

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+ P   RR+ L R+A G++ I++GTHAL  D++Q   L LV+VDEQHRFGV QR  
Sbjct: 357 LLTGSTPTPQRREILARLAGGESAIVVGTHALLSDTVQIPFLGLVVVDEQHRFGVAQRDA 416

Query: 414 LTQKA----------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           L ++             PH+L+MTATPIPRT+ +T  GD+D + + E PAGR P+ T ++
Sbjct: 417 LRERGNVRDPDTGQLRTPHLLVMTATPIPRTIAMTVFGDLDTAVLDELPAGRSPVATHLV 476

Query: 464 PINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESN--------------------- 499
           P  R   ++ + +R    +++G + Y +CP+I+  +                        
Sbjct: 477 PWERTGWVEGIWQRAAREVAQGGRVYVVCPRIDAGEADPGDSADDPQASASRGGTVPLFA 536

Query: 500 ----------------------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
                                     VER          SI  + GRMS  DK++ M  F
Sbjct: 537 AVPGTGDEAADEESAPARPLASVEDWVERLRGEPALAGVSIGTLTGRMSQADKDAAMADF 596

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G   +L++TTVIEVG+DV +A++++I +A+ FGL+QLHQLRGRVGRG+  S C+ +  
Sbjct: 597 ARGRAPVLVSTTVIEVGVDVPEATMMVILDADRFGLSQLHQLRGRVGRGQRESLCVAVTG 656

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLL 656
             +   ++ RL     T DGF +AE DL+ R EG +LG  QSG    L + +     +L+
Sbjct: 657 VEVGSPAFHRLRAFAQTMDGFRLAEADLELRSEGNVLGAAQSGRRSDLDLLRVTRDGALI 716

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
             AR +A+ +++ DP L   R  +  I   L + + A+
Sbjct: 717 ASARAEAEALVSADPHLADHRDLAAAIADRLDEESRAY 754


>gi|332296364|ref|YP_004438287.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
           DSM 14796]
 gi|332179467|gb|AEE15156.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
           DSM 14796]
          Length = 667

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 214/664 (32%), Positives = 356/664 (53%), Gaps = 17/664 (2%)

Query: 38  ETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDG 97
                D+++  P  + +        ++   + +     I     +  +++R  K+ LN  
Sbjct: 17  LDSIDDIIYCFPKRYREVTVVRSHKDVVPGKSLAFKAQI-GMPVYYPERKRLVKVELNIE 75

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRK-ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156
             + +  +F +     KN   + R      G+       ++  HP  I       +   I
Sbjct: 76  GKKASACWFNQ--PYKKNQILKLRPNAYFAGEAVLNNRELVFYHP--IISKDPIYSDSGI 131

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
              Y L   ++    +K I +       + E + + L+ +     + +A   +H P+  +
Sbjct: 132 YPEYCLE--INDSEIRKTIKDIFDEKKEIKETLPESLINRLKLMKLKDALYNLHFPKDLR 189

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
             E     R+R+A+DELL  ++ +L  +++F  +    +N E  + +K L ++PF+ T+ 
Sbjct: 190 SLESA---RKRIAFDELLQWKLTILTEKQKFSSKSAPILNPESDLVKKFLSSLPFTLTED 246

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+  I +I  D+S+   M R+LQGDVGSGKT++A+ A+  AV +G QA  M P  IL++Q
Sbjct: 247 QKKVIDEIFSDVSKNKPMQRLLQGDVGSGKTVIAVSALLCAVSSGFQAAFMVPSEILSKQ 306

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HYE ++++ +   + + ++TG+  ++ R   +E I  G   I+ GTHAL  + ++   L 
Sbjct: 307 HYEKLREWLKPMGVKIYLLTGSTKKSERNLIIEEINKGVPLILTGTHALITEGLELKNLG 366

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LV++DEQHRFGV+QRL L +K   PH L+MTATPIPRTL      D+D S+I   P GRK
Sbjct: 367 LVVIDEQHRFGVRQRLSLIEKGICPHTLVMTATPIPRTLASIFYADLDYSEIRTMPEGRK 426

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGK-KAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            I T II  + I ++   ++  L +   + +++CP IE+       SV +R   L   F 
Sbjct: 427 EIVTKIINKSDIKKLYSIIRENLKQYDSRVFYVCPLIEDSNSLKLESVKKRHKELVNIFP 486

Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              + +IHGR+S  +++ +M  FK G  K+L++TTVIEVGID+  A+I++IEN E FGLA
Sbjct: 487 EFEVGLIHGRLSQSEQDKIMQDFKTGKIKILVSTTVIEVGIDIPQANIMVIENPERFGLA 546

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGR+GRG   S+C LL        S  R+ + +   +GF +AE DL+ R +GEI+
Sbjct: 547 QLHQLRGRIGRGNLSSTCYLLADEE--SYSSRRVQIFEKVNNGFELAERDLELRGQGEII 604

Query: 635 GIKQSGM-PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           G KQSG+     +A P     ++ IA+K A+ I+++DPDLT  +   +++    ++  E 
Sbjct: 605 GSKQSGLDQTLKVANPLKDTDIMRIAQKVAELIISKDPDLTYFKELKLKME-KTFKDREV 663

Query: 694 FQFI 697
            + I
Sbjct: 664 IKAI 667


>gi|326330642|ref|ZP_08196946.1| ATP-dependent DNA helicase RecG [Nocardioidaceae bacterium Broad-1]
 gi|325951483|gb|EGD43519.1| ATP-dependent DNA helicase RecG [Nocardioidaceae bacterium Broad-1]
          Length = 754

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 225/745 (30%), Positives = 365/745 (48%), Gaps = 78/745 (10%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P+    G   K++   +K             DLL++ P  ++      +  ++ E  
Sbjct: 5   LESPIEAVLG-NSKHATKFTK-----GLGLRTVGDLLYHFPRRYLRTADLSQTPQLHEGE 58

Query: 69  IVTITGYISQHSSFQLQKRR------PYKILLNDGTGEITLLFFYRKTE---MLKNVFFE 119
           ++T+ G + +    Q   RR        +  L  GT ++ L FF +        + V   
Sbjct: 59  MLTVLGEVVRSVVRQHTDRRTGRPAYRVETQLKAGTADLQLTFFSKSQRIAEWRRGVLAP 118

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE---------------AVYSLPT 164
           G +    GK    +    + +P  +       +    E                +Y L  
Sbjct: 119 GVRGVFVGKAGSFRGEWQLANPQMVVFGDPSDSENAAEAADNQMAVEELTELFPIYPLTA 178

Query: 165 GLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPA 224
           GL      + +  A   +  + + + + L +    P + +A ++IH P + KD +     
Sbjct: 179 GLQHWDVMRAVRFARQVVEDVTDVLPEQLRETYDVPGLRDALDLIHAPHELKDVQRA--- 235

Query: 225 RERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKD 283
           + R  ++E L  Q+ L   R+  +             + +     +PF+ TK QE+  ++
Sbjct: 236 QHRFRFEEALGLQLVLGRRRRALQALGTTARTGGVHHLLEAFDARLPFTLTKGQETIGEE 295

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           +   ++Q + M R+LQG+VGSGKTLVAL AM   V++GGQA ++AP  +LAQQH+  I  
Sbjct: 296 LETALAQPHPMNRLLQGEVGSGKTLVALRAMLRVVDSGGQAALLAPTEVLAQQHHRSITA 355

Query: 344 Y---------------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
                               Q  VE++TG+M +  R+  L RIA G+A I++GTHAL QD
Sbjct: 356 MLGDLAASGLAGGLFAGDQEQTHVELLTGSMTKTQRKGPLSRIATGEAGIVVGTHALLQD 415

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISK 447
            + +  L LV+VDEQHRFGV+QR  LT KA T PH+L+MTATPIPRT+ +T  GD+++S 
Sbjct: 416 QVMFDDLGLVVVDEQHRFGVEQRAALTDKAGTPPHLLVMTATPIPRTVAMTVFGDLEVST 475

Query: 448 ITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIE-------EKK 496
           +TE PAGR  I+T ++ +      I  V ER+K  + +G + Y + P+I        E  
Sbjct: 476 LTELPAGRAEIQTNLVSLVDHPAWIARVWERVKEEVEKGHQVYVVAPRISGDESEQGESD 535

Query: 497 ESNFRSVVERFNSLHEHFTS----------------SIAIIHGRMSDIDKESVMDSFKNG 540
           + +F +      S     ++                ++A +HG++   +KE  M +F  G
Sbjct: 536 QRDFDADGNEVASAKGQLSAVDEVTEELTNGPLRGLNVAKLHGKLPAEEKERTMSAFAAG 595

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +LIATTVIEVG+DV +A+ ++I +A+ FG++QLHQLRGRVGRG     C+L+ H   
Sbjct: 596 DIDVLIATTVIEVGVDVPNATTMVILDADRFGVSQLHQLRGRVGRGGLHGLCLLVSHAEA 655

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIA 659
              + TRL  +  T DGF ++  DL QR+EG++LG  QSG    L   +    +  +  A
Sbjct: 656 GTPARTRLDAVAETTDGFALSRVDLDQRREGDVLGASQSGRRSSLESLRVLRDEETILQA 715

Query: 660 RKDAKHILTQDPDLTSVRGQSIRIL 684
           R+ A+ +L +D +L +    + R+ 
Sbjct: 716 REAAESLLEKDVELATAPLLAERVA 740


>gi|54026165|ref|YP_120407.1| ATP-dependent DNA helicase RecG [Nocardia farcinica IFM 10152]
 gi|54017673|dbj|BAD59043.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
          Length = 755

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 219/736 (29%), Positives = 367/736 (49%), Gaps = 84/736 (11%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           G K +  L+        +     DLL ++P  +  +          +   +T+ G I++ 
Sbjct: 13  GAKAADSLA-----DAFDMHTVEDLLRHYPLRYATQGQPLTEEAPEDGSHITVIGRIAKT 67

Query: 80  SSFQLQKRRP--YKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK-NR 135
               ++ RR    K+ L+ G+G  + + FF    + +K V  +G +  ++G +   +   
Sbjct: 68  ELRPMRNRRGSLLKVQLDTGSGRPVDVTFFNG--DKVKYVVKQGLRAMMSGNVSYWRPGS 125

Query: 136 IIMVHPHY-IFHNSQDVNFPLIE-------------------------------AVYSLP 163
             + HP Y I   ++D +   +                                 VY   
Sbjct: 126 WSLSHPGYLILPETEDESVGTMTRVRGGGDLRGLAESAKGAAGVDVSFMSREFIPVYPAT 185

Query: 164 TGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP 223
             +        + + L +L  + + + +D+ +++    +++A  +IH P    D +    
Sbjct: 186 AKVQSWDLLACVRQVLEQLDPIDDPLPQDIREERGLLPVSDALRLIHLPEHRADIDRA-- 243

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQESAIK 282
            R+RL +DE LA Q+ L   R +       P       IA      +PF  T  Q+  I 
Sbjct: 244 -RDRLRFDEALALQLVLAERRHEVSGRTARPCPPRADGIAAAFAERLPFELTAGQQKVIG 302

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I  D+++ + M R+LQG+VGSGKT+VAL AM   V+AG Q  ++AP  +LA QHY  + 
Sbjct: 303 EISADLARTHPMHRLLQGEVGSGKTIVALHAMLQVVDAGQQCALLAPTEVLAAQHYRSLT 362

Query: 343 KYT-----------QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
                               V ++TG+M  + ++ AL     G+A I+IGTHAL QD+++
Sbjct: 363 AMLGELGTAGELGAAEHATRVVLVTGSMSASAKKAALLAAVTGEAGIVIGTHALIQDNVE 422

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           ++ L +VIVDEQHRFGV+QR  L  KA    +PH+L+MTATPIPRT+ +T+LGD++ S +
Sbjct: 423 FFDLGMVIVDEQHRFGVEQRDALRAKAKAGASPHLLVMTATPIPRTIAMTTLGDLETSTL 482

Query: 449 TEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQI------------ 492
           TE P GR PI + ++P     N +D   ER+   + +G++AY +C +I            
Sbjct: 483 TELPRGRSPITSKVVPRKLHPNWVDRAWERILEEVGQGRQAYVVCSRIGDDEEGGRTAKG 542

Query: 493 ----EEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLI 546
               EEK+    ++V++ F  L     +S+   ++HGR+   +K+ VM +F  G   +L+
Sbjct: 543 RKAAEEKEPPPTQAVLDVFEMLRHGPLASVRVGLLHGRLPADEKDEVMRAFHEGAVDVLV 602

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
            TTV+EVG+DV +A++++I +A+ FG++QLHQLRGR+GRG     C+L+       ++ T
Sbjct: 603 CTTVVEVGVDVPNATVMVIVDADRFGVSQLHQLRGRIGRGAHPGLCLLVTDAAPGGSAMT 662

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKH 665
           RL  +  T DGF +A  DL+QR+EG++LG  QSG      +        ++  A+  A+ 
Sbjct: 663 RLEAVAATNDGFELAVLDLRQRREGDVLGSAQSGTARSLRLLSLLDDLEVITTAQDLARR 722

Query: 666 ILTQDPDLTSVRGQSI 681
           ++  DP L    G + 
Sbjct: 723 LVEADPGLREHPGLAA 738


>gi|183981755|ref|YP_001850046.1| ATP-dependent DNA helicase RecG [Mycobacterium marinum M]
 gi|183175081|gb|ACC40191.1| ATP-dependent DNA helicase RecG [Mycobacterium marinum M]
          Length = 743

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 216/740 (29%), Positives = 357/740 (48%), Gaps = 72/740 (9%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID--RHYRPKISEISEERIVTITGYIS 77
           G K +  L +             DLL ++P S+++          +      +TI   I+
Sbjct: 13  GAKAAEALDEE-----FGIRTVDDLLRHYPRSYVEGGARRGTDDEQPEVGEHITIVDVIT 67

Query: 78  QHSSFQLQ---KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
           +  SF ++   +R   +I L  G  ++T  FF    + +K    +  ++ ++G++   K 
Sbjct: 68  ETKSFPMKKTPRRLCLRITLGSGRNKVTATFFN--ADYIKKGLTKNTRVMLSGEVGYFKG 125

Query: 135 RIIMVHPHYIFHNSQDVNFPLIE--------------------------AVYSLPTGLSV 168
            + + HP ++  +S D      +                           +Y   T +  
Sbjct: 126 VMQLTHPAFLILDSPDGQHHGTKSLKSIADASQAISGELAMEEFERRFFPIYPASTKVQS 185

Query: 169 DLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
               K + + L  L  + + +   L  +    S  +A   I     A+D      AR RL
Sbjct: 186 WDIFKCVRQVLEVLDPVDDPLPAALRAEHGLISEDDALRAI---HLAEDESEREQARRRL 242

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQD 287
            +DE +  Q AL+  R     E G P        A ++L  +PF  T  Q   + ++   
Sbjct: 243 TFDEAVGLQWALVARRHGELSESGPPAPARADGLAAELLARLPFELTAGQREVLDELSDG 302

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           ++    M R+LQG+VGSGKT+VA++AM   V+AG Q  ++AP  +LA QH   I      
Sbjct: 303 LAATRPMNRLLQGEVGSGKTIVAVLAMLQMVDAGYQCALLAPTEVLAAQHLLSINDVLGP 362

Query: 348 TQI-----------IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
             +            V ++TG+M    +++    IA GQ  I+IGTHAL QD+++++ L 
Sbjct: 363 LAMGGQLGGADNATRVALLTGSMTAGQKKQVRAEIASGQVGIVIGTHALLQDAVEFHNLG 422

Query: 397 LVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E P 
Sbjct: 423 MVVVDEQHRFGVEQRDQLRAKAPAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPR 482

Query: 454 GRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER--- 506
           GR+PI T +I +      +D   +R+   ++ G++AY + P+I+E  ES+      R   
Sbjct: 483 GRQPITTNVIFVKDKPAWLDRAWQRIVEEVAAGRQAYVVAPRIDESDESDNAENGARPSA 542

Query: 507 -----FNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
                ++ L     +   +A++HGR+S  +KE+ M +F+ G   +L+ TTVIEVG+DV +
Sbjct: 543 TAVGLYSRLQAAELAGLRLALMHGRLSADEKEAAMAAFRAGNVDVLVCTTVIEVGVDVPN 602

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A+++++ +A+ FG++QLHQLRGR+GRGE  S C+L         +  RL  +  T DGF 
Sbjct: 603 ATVMLVMDADRFGISQLHQLRGRIGRGEHPSLCLLASWVSPGSPAGRRLRAVAETMDGFD 662

Query: 620 IAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
           +AE DLK+R+EG++LG  QSG      +     H   +E AR        Q         
Sbjct: 663 LAELDLKERREGDVLGRNQSGKAITLRLLSLAEHRVFIEAARDFCNQAYQQSAGGGGP-H 721

Query: 679 QSIRILLYLYQYNEAFQFIR 698
             + ++   +   +   ++ 
Sbjct: 722 PGLALMAARFTNTDRIDYLD 741


>gi|163782095|ref|ZP_02177094.1| ATP-dependent DNA helicase RecG [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882627|gb|EDP76132.1| ATP-dependent DNA helicase RecG [Hydrogenivirga sp. 128-5-R1-1]
          Length = 670

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 224/654 (34%), Positives = 355/654 (54%), Gaps = 23/654 (3%)

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           +        V +   + +        R   +++  DG  E+ L F ++K + +  ++ +G
Sbjct: 18  LRLAKVGEKVVLKLRVKEVRRVNDG-RYTVEVVCTDGNDEVKLKFRFKKNDFVFALYRKG 76

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA-----VYSLPTGLSVDLFKKII 175
             + V GK+K       +VHP  +        FP+        V S+ +    +  +  +
Sbjct: 77  SDVVVQGKLKSFNREKYIVHPELLKAGEYGEIFPIYYVRTKGEVTSISSKTRQNRIRNAL 136

Query: 176 VEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS---PARERLAYD 231
            + + +  P LPE++ + L +K  FP + E   ++H P+        S   P   R  YD
Sbjct: 137 RKTVQKTAPYLPEYLPESLRRKYGFPEVDETVELLHIPKGVDLKSLNSFSDPYHRRAIYD 196

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           +L   Q++LLL +K+ + E    I V   +   +    + F  T +Q   +++IL DM +
Sbjct: 197 DLFLFQLSLLLKKKETELENSPKIEVPVDRFIAEFQSKLSFKLTGAQLRVLREILTDMGR 256

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           ++ M R+LQGDVGSGKT+VA+ A  AAV+ G Q  +M P  ILA QHY   K++ +   +
Sbjct: 257 EHPMNRLLQGDVGSGKTVVAIGAALAAVKKGYQVAVMVPTEILAHQHYRKFKEFFEKEGV 316

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V ++TG++  + ++ A   I  G   +++GTHAL Q+ +++ +L LV++DEQHRFGV Q
Sbjct: 317 EVGLLTGSLTPSQKKSAYRHIKEGNIKVVVGTHALIQERLEFNRLGLVVIDEQHRFGVMQ 376

Query: 411 RLKLTQKAT--APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           R  L +K     PH L+M+ATPIPRTL L+  GD+DIS I E P GRK ++T+++  +  
Sbjct: 377 RKLLLEKGGGLYPHCLVMSATPIPRTLALSVYGDLDISVIDELPPGRKEVRTLLLYESER 436

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSD 527
           D++++ +   LS G K Y I P IEE      ++  E +           + ++HGRMSD
Sbjct: 437 DKLLQAINRELSLGNKVYVIYPLIEESDRVELKAATEEYEKWKSLLPDRNVLLLHGRMSD 496

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K+ VM+ FK     +L++TTVIEVGIDV +A++++IE+A  FGL+QLHQLRGRVGR +
Sbjct: 497 GEKQEVMERFKE-EGDVLVSTTVIEVGIDVPEATLMVIEDAHRFGLSQLHQLRGRVGRSD 555

Query: 588 EISSCILLYHPPL---SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
             S C L+    L     ++  RL VL  T DGF +AE D+K R  GE+LG+ QSG   F
Sbjct: 556 RPSYCYLVVPDDLKRGDIDALKRLKVLVRTNDGFEVAEMDMKLRGPGELLGVSQSGYFGF 615

Query: 645 LIAQPEL--HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
            +A        ++L+ AR+DA+ +L +DP L           L LY+Y +    
Sbjct: 616 NVANLARSHDRAVLQNAREDAQSLLEEDPRLDGHPDLK---ELLLYRYGDKLDL 666


>gi|289826478|ref|ZP_06545590.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 566

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 222/570 (38%), Positives = 327/570 (57%), Gaps = 18/570 (3%)

Query: 138 MVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPEWIEKDL 193
           M+HP Y              +  VY    G+     +K+  +AL  L    + E +  +L
Sbjct: 1   MIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAIAELLPPEL 60

Query: 194 LQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDELLAGQIALLLMRKQFKK 249
            Q     S+ EA   +H P       D E    PA+ RL  +ELLA  +++L +R   ++
Sbjct: 61  AQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSMLALRAGAQR 118

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
               P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++QGDVGSGKTLV
Sbjct: 119 YHTQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLV 178

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G      R+   E
Sbjct: 179 AALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKGKARQAQQE 238

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT----QKATAPHVLL 425
            IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L     Q+   PH L+
Sbjct: 239 AIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLI 298

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKK 484
           MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R++   + EG++
Sbjct: 299 MTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRNACTTEGRQ 358

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543
           AYW+C  IEE      ++    +  L       +I ++HGRM   +K++VM +FK G   
Sbjct: 359 AYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGELH 418

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY  PLSK 
Sbjct: 419 LLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKSPLSKT 478

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      +++   ++ A
Sbjct: 479 AQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRIA 538

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           +HI  + P     +    R +    +Y+ A
Sbjct: 539 RHIHERYP--QQAQALIERWMPETERYSNA 566


>gi|300858338|ref|YP_003783321.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300685792|gb|ADK28714.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302206056|gb|ADL10398.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
           C231]
 gi|302330607|gb|ADL20801.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
           1002]
 gi|308276292|gb|ADO26191.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis I19]
          Length = 704

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 231/703 (32%), Positives = 356/703 (50%), Gaps = 65/703 (9%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL+    + +K +   ++          R  DLL + P ++             E  I+T
Sbjct: 9   PLTQL--LPEKEAKAFARH-----FGYRRAEDLLMHLPRAYAAHGAGLSAGHAQEGDIIT 61

Query: 72  ITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
             G I   S  + +     Y + ++DG    T  FF      L  V  +G +   TGK+K
Sbjct: 62  CIGDIVSTSERRDRNGNLIYTVEISDGAVTTTATFFRAN--WLSKVLVKGARGMFTGKLK 119

Query: 131 KLKNRIIMVHPHYIFHNSQD------------------------VNFPLIEAVYSLPTGL 166
             + +  + HP +                               +N      VY     +
Sbjct: 120 FFREKSQLQHPDFFLFPDPGTKTRSSGGLQALSTTGEFDHVTHIINSLAYIPVYPAKKAM 179

Query: 167 SVDLFKKIIVEALSRLPVLPEWI----EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222
                   I E LS+ P + + +      D+      P++ +A    H      D E   
Sbjct: 180 PTWRILGAIHEILSKTPPIVDPLGNFKPDDM------PTLDQAIRGAH----ETDCERAE 229

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESAI 281
           P   RL Y+E L+  + + L R   K+    P+       +  +L+ +PF  T+ Q+   
Sbjct: 230 PYINRLKYNEALSIALVMALRRADMKRRQAFPMPASQTGLRATLLKALPFQLTEGQQQVA 289

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           ++I +D+ +   M R+LQG+VGSGKT+V+LIAM  AV+A  Q  ++AP  +LA QH   I
Sbjct: 290 QEIEEDLGKNTPMSRLLQGEVGSGKTIVSLIAMLQAVDAHKQCALLAPTEVLATQHAHSI 349

Query: 342 KKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
           +      N Q+ V ++TG++  A R+KAL  I  G A IIIGTHAL QD++ +Y L L +
Sbjct: 350 RATLAAANIQLTVVLLTGSLSTAERKKALLDIMSGDADIIIGTHALIQDTVNFYDLGLCV 409

Query: 400 VDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           VDEQHRFGV+QR  L  K      PH+L+MTATPIPRT+ +T+ GD+ +S + + P GR+
Sbjct: 410 VDEQHRFGVEQRDYLRAKGNSELTPHLLVMTATPIPRTIAMTAFGDLSVSTLRQLPGGRR 469

Query: 457 PIKTVIIPIN---RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           PIKT +I  +     + + +R++  +  G++ Y +CP+++     N   V E   SL   
Sbjct: 470 PIKTFVISSDNPTWSERMWKRIREEVERGQQIYVVCPRVK-----NNGGVEETTASLQHG 524

Query: 514 FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
             S   + ++HG M   DKE++M +F  GT  +L+ATTVIEVGIDV +A+I++I  AE+F
Sbjct: 525 IFSDLRVEMLHGSMHPDDKETIMAAFATGTIDVLVATTVIEVGIDVPNATIMLIREAENF 584

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           G++QLHQLRGRVGRG + S C L         +  R+  +  T DGF +AE DL+ R+EG
Sbjct: 585 GVSQLHQLRGRVGRGGKESICFLHTTAEPDTPARQRIQKVAATADGFALAEIDLEYRQEG 644

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           +ILG +QSG  +  I       +L++ A  DA  I+ Q+P++ 
Sbjct: 645 DILGTQQSGASQKRI-SFIQDKALIQRANDDAAAIVQQNPNIA 686


>gi|288923497|ref|ZP_06417616.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
 gi|288345155|gb|EFC79565.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
          Length = 783

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 221/794 (27%), Positives = 367/794 (46%), Gaps = 116/794 (14%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL +   +G K++  L+  ++          DLL + P  + +R     +  +    
Sbjct: 4   LDTPLKSV--LGAKHASLLADELDLA-----TVGDLLNHLPRRYHERGELTDLDGLVVGE 56

Query: 69  IVTITGYISQHSSFQLQ-------KRR---PYKILLNDGTGEITLLFFYRKTEMLKNVFF 118
           I T+   +++    + +       +RR     +I + DG GE++L+FF ++         
Sbjct: 57  IATVQARVTKVVKHKPRADWNTSNRRRESGRTEITVTDGRGELSLVFFNQQ--WRAKALT 114

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIF--------------------------------- 145
            G      GK+ + + R  ++HP                                     
Sbjct: 115 PGTTALFAGKVAEFRGRRQLIHPEVHMIDGPDPDDDAGDGRLGVAGGQLGELGVGVGGDD 174

Query: 146 --------HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197
                    ++       +  +Y     L+     + +   L  L  L + + + +  + 
Sbjct: 175 VAGERGDQASAVADFAGALVPIYPATAKLTSWKIARCLRLVLDSLGALTDPLPESVRSRH 234

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
               +A A+ +IH P    D    + AR RL +DE L  Q AL   R++ +     P   
Sbjct: 235 RLVGLARAYQLIHRPGTRGDV---AVARTRLKWDEALVVQTALAQRRRRVELVATQPRPG 291

Query: 258 E-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             G +      ++PF+ T  Q    + I  ++++   M R+LQG+VGSGKT+VA+ AM  
Sbjct: 292 RAGGLLDAFDASLPFALTDGQREVSETIAAELAKAVPMHRLLQGEVGSGKTVVAVRAMLL 351

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQN-----------TQIIVEIITGNMPQAHRR 365
           AV++GGQAV++AP   LA QH+  + +   +               V ++TG+MP   RR
Sbjct: 352 AVDSGGQAVLLAPTETLAAQHHRSLLRLLGDQARAGELGVSGPATRVALLTGSMPARARR 411

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAPHVL 424
             L  IA G   +++GTHAL    + ++ L LV+VDEQHRFGV+QR +L  +    PH+L
Sbjct: 412 DTLAAIADGSVGLVVGTHALLGAGVTFHDLALVVVDEQHRFGVEQRDELRSRGRRPPHLL 471

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSE 481
           +MTATPIPRT+ +T  GD+++S + + P+GR PI T ++P      +  +  RL+  ++ 
Sbjct: 472 VMTATPIPRTVAMTVFGDLEVSVLNQLPSGRSPISTFVVPAVNTVLMSRMWGRLREEVAA 531

Query: 482 GKKAYWICPQIEEKKE------------------------SNFRSVVERFNSLH------ 511
           G +AY +CP++ E                              R   ER  +        
Sbjct: 532 GHQAYVVCPRVGEGTAGAGDPAGTEEPAPPEPVESAQPGGQGPRDGGERVGATVAQTLPR 591

Query: 512 ----EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
               E     +  +HGRM    ++ VM  F  G   +L+ATTVIEVG+DV +A+++II +
Sbjct: 592 LVADELAGLRVEGLHGRMPAAARDDVMTRFAAGEVDVLVATTVIEVGVDVPNATVMIILD 651

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           ++ FG++QLHQLRGRVGRG     C+L      +  +  RL  + +T DG  +A  DL Q
Sbjct: 652 SDWFGVSQLHQLRGRVGRGSAPGICLLQTCVDATAPAAERLRAVASTSDGAELALLDLAQ 711

Query: 628 RKEGEILGIKQSGMPKF-LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
           R+EG++LG  QSG  +   + +    + L+  AR++A  I+  DP+L S+   ++R LL 
Sbjct: 712 RREGDVLGAAQSGGRRSLRLLELLRDEDLIRSAREEAGAIVAADPELQSLP--ALRRLLA 769

Query: 687 LYQYNEAFQFIRAG 700
                 +  F+  G
Sbjct: 770 DALDETSAAFLEKG 783


>gi|303233282|ref|ZP_07319954.1| putative ATP-dependent DNA helicase RecG [Atopobium vaginae
           PB189-T1-4]
 gi|302480672|gb|EFL43760.1| putative ATP-dependent DNA helicase RecG [Atopobium vaginae
           PB189-T1-4]
          Length = 775

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 212/727 (29%), Positives = 332/727 (45%), Gaps = 77/727 (10%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   L   +GV  K     + +            DLL   P  ++D  ++  I+  +  +
Sbjct: 25  LSDSLDKLKGVSTKRQERFAHL------GINTVFDLLMCMPRRYLDFTHQVDIAHAAINQ 78

Query: 69  IVTITGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            VTI   +        + R   +++ + D +  + L FF  +   L   +  G  + ++G
Sbjct: 79  TVTIIARVDSIKLTYPKPRLSIFEMFVVDKSAAMRLSFF--RQPWLAKKYHVGDVVALSG 136

Query: 128 KIKKLKNRIIMVHPHYIFHNSQ-----------DVNFPLIE------------AVYSLPT 164
           K+        M  P                   D   PL +             +Y++  
Sbjct: 137 KVAFSYGFKTMNAPLVEVLTPASSLPSSSPVSTDATQPLTQGTYAQPSNMRVMPIYAMCA 196

Query: 165 GLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPA 224
            +S  ++   + +AL++   + +W+   L+ K     + +AF  +H PR   D      A
Sbjct: 197 DISTAVYHAAVKQALAQYVPVVDWLPSTLVAKHQLLGVNQAFFSMHAPRTCADV---YHA 253

Query: 225 RERLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           R R AY+ELL  Q+AL +    +  +  G     +G   ++ LR +PFS T  Q+    +
Sbjct: 254 RRRFAYEELLYLQLALRMRHVNETGERAGFTHVTQGPCVERFLRALPFSYTTEQQQCADE 313

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           +L DM+    MLR+L GDVG+GKT V  + MAA  +   QA +MAP  +LA Q+ + I  
Sbjct: 314 LLGDMAANKPMLRLLLGDVGTGKTAVCALGMAACCDTHTQAALMAPTVVLASQYTQSIGP 373

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                 I   ++T   P A R +    IA G   ++ GT AL    IQ+  L  +I+DEQ
Sbjct: 374 LLDAAHISWALLTSATPAAERARICNDIARGAITVVFGTVALLSKDIQFSALSYIIIDEQ 433

Query: 404 HRFGVQQRLKLTQKA--------TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
           HRFGV QR +L  KA            VL+M+ATP+PR+L L+  GD+ +S+I  KP   
Sbjct: 434 HRFGVHQREELQHKAQLSSARPGHTADVLMMSATPVPRSLALSLYGDMAVSRICHKPHAG 493

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE--------------------- 494
             I T IIP   +      ++  L+ G++ Y ICP I E                     
Sbjct: 494 AKITTHIIPTENLFVAYSAMQEALARGEQCYIICPSITESSADSTTTSSAESSNVRVHAD 553

Query: 495 ----------KKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTC 542
                      +  +  +       L     S   I ++ G +   DKE VM++F+    
Sbjct: 554 DACDVADAFVSQTKHIHAAQTVHEQLLRGEFSAWRIGLLTGALKTEDKERVMEAFRAHEI 613

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ATT++EVG+DV +A+ ++I +A+ FGLA LHQLRGRVGRG   +   +        
Sbjct: 614 DVLVATTIVEVGVDVPNANTMLILDADRFGLATLHQLRGRVGRGSAPAQVFMHCAARPQT 673

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            + TRL++L++T DGF +A+ DL+ R EGEILG KQSG+             L+E AR D
Sbjct: 674 PARTRLAMLEHTNDGFELAQRDLELRSEGEILGYKQSGVQTLTFCDMVQDIDLIEAARVD 733

Query: 663 AKHILTQ 669
           A  I+ +
Sbjct: 734 ADEIIEK 740


>gi|158312984|ref|YP_001505492.1| DEAD/DEAH box helicase domain-containing protein [Frankia sp.
           EAN1pec]
 gi|158108389|gb|ABW10586.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]
          Length = 781

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 217/782 (27%), Positives = 359/782 (45%), Gaps = 109/782 (13%)

Query: 9   LFAPLSTFRG-VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           L  P    +G +G + +  L+              DLL + P  + +R     + E++  
Sbjct: 9   LDTP---LKGPLGTRTAALLA-----DGLELDTVGDLLDHLPRRYHERGELTDLHELAVG 60

Query: 68  RIVTITGYISQHSSFQLQKRRP-----------YKILLNDGTGEITLLFFYRKTEMLKNV 116
            I T+   +++    Q +                +I + DG GE++L+FF ++       
Sbjct: 61  EIATVQARVTKVVRHQGRPGSGGGPRRRGGGGRTEITVTDGRGELSLVFFNQQ--WRAKE 118

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN------------------------ 152
              G      GK+ + + R  ++HP     ++ D                          
Sbjct: 119 LVPGTTALFAGKVAEFRGRRQLIHPEVHLLDAPDPEGDADGADGADGASGADGVGVVEGA 178

Query: 153 --------------------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192
                                  +  +Y     ++     + +   L  L  L + +   
Sbjct: 179 GGAGSGAAAAGEPAPVAAGFAGSLVPIYPATAKITSWTLARCLRLVLDSLGELDDPLPAV 238

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
           L  +    S+  A+ + H P    D    + AR RL +DE L  Q+AL   R++ +    
Sbjct: 239 LRSRHRLASLRRAYELAHRPTSRADI---AVARTRLKWDEALVVQVALAQRRRRAELAAT 295

Query: 253 IPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           +      G +       +PF+ T  Q    + I  +M++   M R+LQG+VGSGKT+VA+
Sbjct: 296 VSRPGCAGGLLDAFDAALPFALTDGQREVGETIAAEMARAFPMHRLLQGEVGSGKTVVAV 355

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT-----------QNTQIIVEIITGNMP 360
            AM  AV++GGQAV++AP   LA QH+  + K                   V ++TG+MP
Sbjct: 356 RAMLTAVDSGGQAVMLAPTETLAAQHHRSLLKLLGDQARAGELGVDGPATRVALLTGSMP 415

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-AT 419
              RR+ L  +A G   +++GTHAL    + +  L LV+VDEQHRFGV+QR +L  +   
Sbjct: 416 ARARREVLAAVADGSVGLVVGTHALLGADVAFADLALVVVDEQHRFGVEQRDELRSRGRR 475

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLK 476
            PH+L+MTATPIPRT+ +T  GD+++S + + PAGR PI T ++P  +   +D +  R++
Sbjct: 476 PPHLLVMTATPIPRTVAMTVFGDLEVSTLNQLPAGRSPISTFVVPAAKSHFMDRMWGRVR 535

Query: 477 VVLSEGKKAYWICPQIE---------------------EKKESNFRSVVERFNSLH--EH 513
             ++ G +AY +CP++                       + E    +V E    L   E 
Sbjct: 536 DEVAAGHQAYVVCPRVGDGEGGDGGEEPSGPPASGAGPREGERVGATVTEVLPRLATGEL 595

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +  +HGR+    ++ +M  F  G   +L+ATTVIEVG+DV +A+++II +A+ FG+
Sbjct: 596 AGLRVEGLHGRLPSPVRDEIMTRFAAGEVDVLVATTVIEVGVDVPNATVMIIMDADWFGV 655

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           +QLHQLRGRVGRG     C+L      +  +  RL  +  T DG  +A  DL QR+EG++
Sbjct: 656 SQLHQLRGRVGRGSAPGVCLLHTSVDGAVPAAERLLAVAATSDGAELARLDLVQRREGDV 715

Query: 634 LGIKQSGMPKF-LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           LG  QSG  +   + +    + L+  AR++A  ++  DP+L        R+   L + + 
Sbjct: 716 LGAAQSGGRRSLRLLELLRDEDLIRAAREEAGALVAADPELEGQPALLRRLTAALDEASA 775

Query: 693 AF 694
           AF
Sbjct: 776 AF 777


>gi|154509012|ref|ZP_02044654.1| hypothetical protein ACTODO_01529 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798646|gb|EDN81066.1| hypothetical protein ACTODO_01529 [Actinomyces odontolyticus ATCC
           17982]
          Length = 715

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 220/716 (30%), Positives = 350/716 (48%), Gaps = 48/716 (6%)

Query: 1   MRPSFLNPLFAPLS-TFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRP 59
           MR   ++ L  PLS       KK +  L        A      DLL   P  +       
Sbjct: 1   MR--LVSALDVPLSLRLP---KKTAKALE------GAGVATVGDLLLVAPRRYYHWGRLT 49

Query: 60  KISEISEERIVTITGYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEML---K 114
            +S + E   VTI   ++       +       ++ L DG   ++  FF +    L   +
Sbjct: 50  PLSSLREGEDVTILAEVAGAHLVANRSSSGVRLEVALTDGVQFLSATFFAKNQYKLAPIE 109

Query: 115 NVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFK 172
            +   G+     GK+   + ++ + HP +     +D+         +Y     L+     
Sbjct: 110 RLLTPGQSFLFAGKVGAYRGKLQLTHPSFEGVGGEDIERIASRPIPIYPATGSLASWAIA 169

Query: 173 KIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
           + I   L  L    +P+ +  D+ ++  F S AE    +H P   +D++     R+ LA+
Sbjct: 170 RAIGMVLDHLDDAHVPDPVPADVRERAGFASHAECLRALHQPETDEDYQQA---RKALAF 226

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            E    Q+ L   R+  +    +   ++  + ++   ++PF  T SQ  A+  I  D++ 
Sbjct: 227 AEAFVLQVGLAAQRRGARAAAALASPIDAPLCERFRSSLPFELTDSQREAVAQIGADLAG 286

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ- 349
           +  M R+LQGDVGSGKT+VAL A+   V AG Q   +AP  +LA+QH   ++   +    
Sbjct: 287 EVPMQRLLQGDVGSGKTVVALSALLQVVAAGHQGAFVAPTEVLAEQHAASLRALLEPLGA 346

Query: 350 --IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
               V ++TG+   A RR+    +   +  I+ GTHALFQ+S+++  L LV+VDEQHRFG
Sbjct: 347 DDPDVRLLTGSTTPAARREIQSAMNAAEPLIVAGTHALFQESVRFADLALVVVDEQHRFG 406

Query: 408 VQQRLKLT---QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           V+QR  L    +   A H L+MTATPIPRT+ +T  GD+D ++++  P+GR P+ T +  
Sbjct: 407 VEQRAALRGAREDGRAVHELVMTATPIPRTIAMTVFGDLDDTRMSGMPSGRTPVATYLAD 466

Query: 465 ---INRIDEVIERLKVVLSEGKKAYWICPQI---------EEKKESNFRSVVERFNSLHE 512
                 ++    R    +++G++ Y +CP+I         EE+      SV E    L  
Sbjct: 467 SANAAWVERTWARAAEEIAQGRRVYVVCPRIDASDDVADAEEEGARPLASVEEVAAYLRS 526

Query: 513 HFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           H   S   I  + GR     K  +M+ F  G   LL+ATTVIEVG+DV +A++++I +A+
Sbjct: 527 HPALSGIAIHELTGRTPSPVKAQIMEDFSTGRAPLLVATTVIEVGVDVSEATLMVILDAQ 586

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            FGLAQLHQLRGRVGR    S CI ++   L+ +   RL    +T DGF +AE DL+ RK
Sbjct: 587 QFGLAQLHQLRGRVGRSSLPSLCIAMHRHELTDSGRARLQAFADTTDGFELAEADLRLRK 646

Query: 630 EGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR--GQSIR 682
           EG++LG  QSG             ++L+  A+ +A+ +L QDP L       +++R
Sbjct: 647 EGDVLGAGQSGTATHLRFLSVRRDEALIRRAKGEAETLLEQDPMLARHPDLARALR 702


>gi|284992417|ref|YP_003410971.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284065662|gb|ADB76600.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
           DSM 43160]
          Length = 726

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 212/723 (29%), Positives = 352/723 (48%), Gaps = 59/723 (8%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           G K +  +++             DLL ++P  +  R    ++ ++     VT+   + + 
Sbjct: 14  GAKTAKAMAE-----QLELYTVRDLLRHYPRRYAKRGEMTRLDDLQVGDRVTVLAQVRKV 68

Query: 80  SSFQLQKRRPY--KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
           ++ +++ R     ++ + DG G + L+FF R+         EG      G + + +    
Sbjct: 69  ATRKMRNRPGTLTEVTVGDGAGSMQLVFFNRRHA----NLREGAWGLFAGTVGEYRRSKQ 124

Query: 138 MVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSR---LPVLPEWIEKD 192
             HP        D       +  +Y     +S  + +K +   L        + + +  +
Sbjct: 125 FAHPDCHLITGDDDTDWARALIPIYPASKDVSSWVIQKSVRLLLDASGGFGFVEDPLPAE 184

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
           L  +   PS+A A   IH P   +D E       RL +DE L  Q+ L   R+    E G
Sbjct: 185 LRARHGLPSLAAALLDIHRPTSDEDVERAG---YRLKWDEALTLQLTLAARRRAAALEPG 241

Query: 253 IPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           I      G +   +   +PF+ T  Q +  +++  +++++  M R+LQG+VG+GKT+VAL
Sbjct: 242 IARPRRPGGLLDAVDAALPFALTDGQCAVGEELAAELAREQPMHRLLQGEVGAGKTVVAL 301

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMP 360
            AMA  V+AGGQA ++AP  +LA QH   I                     V ++TG+  
Sbjct: 302 RAMAQVVDAGGQAALLAPTEVLAAQHARSIGAMLGPLGRAGELDGDPAGTRVVLLTGSQK 361

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-T 419
            A RR+    +A G A I++GTHAL Q+ + +  L LV+VDEQHRFGV+QR  L  K   
Sbjct: 362 AAARRQGRAAVADGSAGIVVGTHALLQEGVDFADLGLVVVDEQHRFGVEQRDALRAKGNR 421

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERL 475
            PHVL+MTATPIPRT+ +T  GD++ S + + P GR  + + ++P+      +D   ERL
Sbjct: 422 PPHVLVMTATPIPRTVAMTVYGDLETSTLRQLPGGRGGVASSVVPVRDKPAWLDRAWERL 481

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVV-------------------ERFNSLHEHFTS 516
           +  ++ G++AY +CP+I E   +                         +    L     +
Sbjct: 482 REEVAAGRQAYVVCPRIGEDAATEEEPDDADGAPAGEVSDRRPPLAVLDVAEELRAGPLA 541

Query: 517 --SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              + ++HGRM+  DKE+ M +F  G   +L+ATTV+EVG+DV +A+++++ +A+ FG++
Sbjct: 542 GLRLEVLHGRMTPEDKEARMRAFAAGDVDVLVATTVVEVGVDVPNATVMVVLDADRFGVS 601

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRV RG     C+L+     S  +  RL+ +  T DGF +A  DL+ R+EG++L
Sbjct: 602 QLHQLRGRVARGRHQGLCLLVSEASASSATGQRLAAVAGTSDGFELARLDLETRREGDVL 661

Query: 635 GIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI-LLYLYQYNE 692
           G  QSG      +      + L+  AR +A  +L  D  L    G ++ +  L   +  E
Sbjct: 662 GAAQSGRRSGIRMLSLLEDEQLIAEARTEATALLATDRGLADFPGLAMEVAALATDERAE 721

Query: 693 AFQ 695
             +
Sbjct: 722 YLE 724


>gi|34763881|ref|ZP_00144785.1| ATP-dependent DNA helicase recG [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27886344|gb|EAA23615.1| ATP-dependent DNA helicase recG [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 619

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 213/593 (35%), Positives = 334/593 (56%), Gaps = 13/593 (2%)

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
              ++  K ++ DGTG + +L+F      +K     G +    G+ KK      +++P Y
Sbjct: 10  RSGKKIVKAMVTDGTGIMEILWF--GMPYIKKSLKIGEEYLFIGQTKKS-AVFQLINPEY 66

Query: 144 -IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPS 201
            +F   Q V+   I  +YS    ++ +  +K++ + L + L    E I K L+++     
Sbjct: 67  KLFSGQQKVSENEILPIYSSNKNITQNSLRKLVEKFLVNFLNYFEENIPKKLIKEYRIME 126

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK--QFKKEIGIPINVEG 259
              A   IH P   K+ E     + R A +ELL  ++ +L  R   +        +  + 
Sbjct: 127 RKSAIKNIHYPISMKEIEEA---KRRFAIEELLILELGILKNRFIIENSNSKNYKVEGKK 183

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           +  ++ L  + F+ T +Q+  IK+I  ++S    + R++QGDVGSGKT+VA++ +    E
Sbjct: 184 EKVREFLSQLTFNLTNAQKRVIKEIYDEISNGKIVNRLIQGDVGSGKTVVAMVMLIYMAE 243

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G Q  +MAP  ILA QHY  IK+  +   + VE++T ++    + + LE IA+G+  I+
Sbjct: 244 NGYQGALMAPTEILANQHYLGIKERLEKIGLRVELLTSSIKGKKKNEILEGIANGKIDIV 303

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           IGTH+L +D + + KL L+++DEQHRFGV QR KL +K    ++L+M+ATPIPR+L L+ 
Sbjct: 304 IGTHSLIEDDVIFKKLGLIVIDEQHRFGVNQRNKLREKGFLGNLLVMSATPIPRSLALSI 363

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            GD+D+S I E P GR PIKT  I  +  ++++   +   ++EG +AY++ P IE   + 
Sbjct: 364 YGDLDLSIIDELPPGRTPIKTKWIASDEDLEKMYNFIYKKVNEGNQAYFVAPLIETSDKM 423

Query: 499 NFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             +SV +    +   F    I IIHG+M   +K+ VM  FKN    +LIATTVIEVGIDV
Sbjct: 424 ALKSVDKVSEEIERKFSNKKIGIIHGKMKAKEKDDVMLKFKNKEYDILIATTVIEVGIDV 483

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
             ++I+ I NAE FGL+ LHQLRGRVGRG + S C L+ +  +++NS  RLS+++ TEDG
Sbjct: 484 PASTIMTIYNAERFGLSALHQLRGRVGRGSKQSYCFLISN-SITENSKQRLSIMEETEDG 542

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           F IAEEDLK R  GEI G++QSG               +++ R +    L + 
Sbjct: 543 FRIAEEDLKLRNSGEIFGLRQSGFSDLKFIDIIYDIKTIKLVRDECIKYLKEH 595


>gi|145629154|ref|ZP_01784953.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           22.1-21]
 gi|144978657|gb|EDJ88380.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           22.1-21]
          Length = 569

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 214/552 (38%), Positives = 328/552 (59%), Gaps = 16/552 (2%)

Query: 137 IMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPEWIEKD 192
            + HP Y  +  N+  V    +  +YS   GL  +  +K+  +AL+ L    + E +  +
Sbjct: 3   EIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALALLDKVQIAEILPNE 62

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLMRKQFK 248
               +   S+ EA  ++H P      E       PA++RL ++ELLA  +A+  +R   +
Sbjct: 63  FNPHQ--YSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKVRLGTQ 120

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +   +P++ +  + Q+ L  +PF PT +Q+  + DI QD+ +   M+R++QGDVGSGKTL
Sbjct: 121 QFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVGSGKTL 180

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +    R+  L
Sbjct: 181 VAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGKSRQAEL 240

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVL 424
           E+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K       PH L
Sbjct: 241 EKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAGFYPHQL 300

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGK 483
           +MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++       ++E +
Sbjct: 301 IMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNACVNEKR 360

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +AYW+C  I+E +    ++    +  L +     +I ++HGRM   +K+ VM  FKN   
Sbjct: 361 QAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAEL 420

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y PPL K
Sbjct: 421 DLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGK 480

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +A       ++   +  
Sbjct: 481 VSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMIPTVQHY 540

Query: 663 AKHILTQDPDLT 674
           AK ++ + PD+ 
Sbjct: 541 AKLLIQKYPDVA 552


>gi|289809908|ref|ZP_06540537.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 562

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 218/551 (39%), Positives = 322/551 (58%), Gaps = 16/551 (2%)

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
            +  VY    G+     +K+  +AL  L    + E +  +L Q     S+ EA   +H P
Sbjct: 16  TLTPVYPTTEGVKQATLRKLTDQALELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRP 73

Query: 213 RK---AKDFE-WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
                  D E    PA+ RL  +ELLA  +++L +R   ++    P++    +  K+L +
Sbjct: 74  PPTLQLADLETGKHPAQRRLILEELLAHNLSMLALRAGAQRYHTQPLSTNNILKDKLLAS 133

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF PT +Q   + +I +DM+    M+R++QGDVGSGKTLVA +A   A+  G Q  +MA
Sbjct: 134 LPFKPTSAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMA 193

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LA+QH    + + +   + V  + G      R+   E IA GQ  +I+GTHA+FQ+
Sbjct: 194 PTELLAEQHANNFRNWFEPLGVEVGWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQE 253

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLT----QKATAPHVLLMTATPIPRTLVLTSLGDID 444
            +Q+  L LVI+DEQHRFGV QRL L     Q+   PH L+MTATPIPRTL +T+  D+D
Sbjct: 254 QVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLD 313

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSV 503
            S I E P GR P+ TV IP  R  E+I+R++   + EG++AYW+C  IEE      ++ 
Sbjct: 314 TSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAA 373

Query: 504 VERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
              +  L       +I ++HGRM   +K++VM +FK G   LL+ATTVIEVG+DV +AS+
Sbjct: 374 EATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASL 433

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           +IIEN E  GLAQLHQLRGRVGRG   S C+LLY  PLSK +  RL VL+++ DGF+IA+
Sbjct: 434 MIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQ 493

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           +DL+ R  GE+LG +Q+G  +F +A      +++   ++ A+HI  + P     +    R
Sbjct: 494 KDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRIARHIHERYP--QQAQALIER 551

Query: 683 ILLYLYQYNEA 693
            +    +Y+ A
Sbjct: 552 WMPETERYSNA 562


>gi|329947047|ref|ZP_08294459.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328526858|gb|EGF53871.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 752

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 221/753 (29%), Positives = 351/753 (46%), Gaps = 86/753 (11%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           VGK+ +  L+K             DLL   P  +        +  + +    TI   I++
Sbjct: 5   VGKRTAAQLAK------QGVETGADLLRLLPRRYDTWGDLTDMRTLVKGEQATIQAQIAR 58

Query: 79  HSSFQLQKRR---PYKILLNDGTGEITLLFFYRKTEMLKNV--FFEGRKITVTGKIKKLK 133
            SS + +  R     +  + DG   + ++ F    +M         G  + ++GK+   +
Sbjct: 59  ASSRRTRSGRAPALMEATVTDGVSTMDVVQFGAAGQMRARATRLAPGTTVLMSGKVGLHR 118

Query: 134 NRIIMVHP-----HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LP 186
            R  + +P       +    ++        +Y     L      K +   L +L    + 
Sbjct: 119 GRKQLTNPRLYVLDELDEAEREALLARPIPIYPGTEALPSWSVAKAVRTVLDQLGPGDVA 178

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + + +DL +         A+  +H P    D      AR RL ++E L  Q+AL   R  
Sbjct: 179 DPLPEDLRRSAGLIDAYTAYRWVHRP---DDAHQWKAARSRLRHEEALILQVALAQRRAH 235

Query: 247 FKKE----IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +            V   +   +  ++P++ T  Q    ++I  D+++   M R+LQGDV
Sbjct: 236 HEATRTAVAWPEPQVVDSLRADLDASLPYNLTAGQVRVGEEIAADLARTVPMQRLLQGDV 295

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-----------I 351
           GSGKTLV+L AM   V+ GGQA ++AP  +LA QH+  ++       +            
Sbjct: 296 GSGKTLVSLRAMLQVVDGGGQAALLAPTEVLAAQHHSSLEALLGPLALSGMLGEAERATR 355

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V ++TG+ P A RR+ L  +A G+  I++GTHAL  D++Q   L LV+VDEQHRFGV QR
Sbjct: 356 VHLLTGSTPAAQRRRILADLAAGEPAIVVGTHALLSDTVQIPFLGLVVVDEQHRFGVAQR 415

Query: 412 LKLTQ----------KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
             L +          +   PH+L+MTATPIPRT+ +T  GD+  S + E PAGR P+ T 
Sbjct: 416 DALRERGGVTDSATGQRHTPHLLVMTATPIPRTIAMTVFGDLATSVLDELPAGRSPVPTH 475

Query: 462 IIPINR---IDEVIERLKVVLSEGKKAYWICPQIE------------------------- 493
           ++P +R   ++ +  R     + G + Y +CP+IE                         
Sbjct: 476 LVPWSRTSWVEGIWRRAAKETASGGRVYVVCPRIEVGDDEPQQEAAMASGADTAAEQTPG 535

Query: 494 --EKKESNFR---------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             E +ES  R            +R  +        +  + GRMS  DK S M  F +G  
Sbjct: 536 PLELEESCSRPDRPLAAVEEWRQRLEAEPALEGVGVGSLTGRMSSEDKASAMADFASGAT 595

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+ATTVIEVG+DV +A++++I +A+ FGL+QLHQLRGRVGRG   S C+ +    +  
Sbjct: 596 PVLVATTVIEVGVDVPEATMMVILDADRFGLSQLHQLRGRVGRGSRESVCVAVTGVEVGS 655

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARK 661
            ++ RL    +T DGF +AE DL  R EG++LG  QSG      + +      L+  AR+
Sbjct: 656 TAFHRLKAFASTTDGFALAEADLDLRSEGDVLGASQSGRTSGLDLLRVTRDARLIATARR 715

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           +A+ I+  DP L   R  +  I+  L + ++AF
Sbjct: 716 EAERIVADDPQLREHRALAAAIVERLDEESQAF 748


>gi|227488102|ref|ZP_03918418.1| possible DNA helicase RecG [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227541499|ref|ZP_03971548.1| possible DNA helicase RecG [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091964|gb|EEI27276.1| possible DNA helicase RecG [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227182781|gb|EEI63753.1| possible DNA helicase RecG [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 702

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 211/671 (31%), Positives = 351/671 (52%), Gaps = 50/671 (7%)

Query: 35  NANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR-RPYKIL 93
           N   T   +LL  +P  +ID      +    +  IVT  G I++  S   +K  + + + 
Sbjct: 25  NFGITSVPELLLNYPRRYIDSAQGTALIGAQDGDIVTAIGTITRTWSTTTRKGMKIFHVT 84

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           ++DG  E+T +FF   +  L +V  EG ++ VTGK+K  + +  + HP ++  NS     
Sbjct: 85  VDDGGVEVTCVFFN--SAYLSHVLIEGSRVLVTGKVKSYQGKPQLSHPGFLVLNSTHKGT 142

Query: 154 PLI---------------------EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI--- 189
             I                       +Y   +            E L + P + E +   
Sbjct: 143 GQIKELSKYPDAEGILRRLTASPWTPIYRGTSSFPSMRMWAATSEVLRQTPHISEPLGTP 202

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR---KQ 246
            ++++              +H P             +R  Y+E L+  + + L+R     
Sbjct: 203 PEEMV------DFDTMLRGMHVPSTV----SPYACEQRARYNEALSLSLVMALLRDDQSH 252

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            +     P++  G   Q+ + ++P++ T  Q+S +++I  D+++   M R+LQG+VGSGK
Sbjct: 253 RRAHPCAPLDDGGSRRQQFIESLPYTLTDGQQSVVQEISSDLAKPTPMSRLLQGEVGSGK 312

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VALI+M   ++AG Q   +AP  +LAQQH   + +        V  +TG+M  A ++ 
Sbjct: 313 TVVALISMLQVIDAGHQTAFLAPTEVLAQQHARSLTQLLGAVPARVVCLTGSMTVAQKKD 372

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHV 423
           AL +   G+A I++GTHAL QD+++++ L +VIVDEQHRFGV+QR  L  + T    PH+
Sbjct: 373 ALLKTISGEADIVVGTHALIQDTVEFFDLGMVIVDEQHRFGVEQRDMLRNRGTNGITPHL 432

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII---PINRIDEVIERLKVVLS 480
           L MTATPIPRT+ +T+ GD+++S +TE P GRKPI++ ++       ++   ER++  + 
Sbjct: 433 LAMTATPIPRTIAITAFGDLEVSLLTELPGGRKPIRSAVVFEGNDAWMNRAWERIREEVQ 492

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +G +A+ +CP+I+         V E       +   ++A++HG++   DKE +M +F  G
Sbjct: 493 QGHQAFIVCPRID--GPGGVEEVYELLEG-QIYPDLAVALLHGKLHPDDKEEIMTAFGKG 549

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L++TTVIEVGIDV +A+I+++  +E+FG++QLHQLRGR+GRG   S C+       
Sbjct: 550 QIDILVSTTVIEVGIDVPNATIMMVRESENFGVSQLHQLRGRIGRGGYESWCLFHTLALP 609

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIA 659
               Y RL  + NT DG+ +A  DL+ R+EG+I+G  QSG  K   +        L+E A
Sbjct: 610 DSEQYARLCAIANTNDGYTLATLDLETRQEGDIIGTSQSGSRKQVRLLSFARDGELIEHA 669

Query: 660 RKDAKHILTQD 670
            K A  ++  D
Sbjct: 670 NKHADELVHAD 680


>gi|28493533|ref|NP_787694.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist]
 gi|28476575|gb|AAO44663.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist]
          Length = 768

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 213/687 (31%), Positives = 354/687 (51%), Gaps = 40/687 (5%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           GKK +  L+K         +R IDLL Y+P  +I R    K+SE+     VTI G +   
Sbjct: 93  GKKMASLLAKE-----FGISRVIDLLTYYPRRYICRGKLTKLSELIPGDEVTIVGRVLST 147

Query: 80  SSFQ-LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
              +         + L+DG   I L+FF++           G     +GK+ +  N+  +
Sbjct: 148 EQRKTFSGANFLSVTLSDGENIIQLVFFHQ--PWRAENLKPGACGLFSGKVTEFNNKKQL 205

Query: 139 VHPHYIFHNSQDVNFPL------IEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEK 191
            HP Y   +S+     +      I  +Y            + +  AL  +     +++  
Sbjct: 206 SHPEYELFSSEPTREQIQKWNEQIIPIYRACIACPSWKIARAVDLALEAVKGQTVDFMSG 265

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           +      + S+ +AF +IH+P   ++ E     +E L + E    Q ALL  ++   +  
Sbjct: 266 N----YGYMSVEKAFYVIHHPTDNEELEAA---KESLRFFEAFLLQSALLHRKRFRNRAS 318

Query: 252 GIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             P     G   ++    + FS T  Q  A  +I +D+S    M R+L G+VGSGKTLVA
Sbjct: 319 ATPFIRKNGGFLERFDARLEFSQTNDQLRAADEIFEDLSLSEPMTRLLHGEVGSGKTLVA 378

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRRKA 367
           + AM  A +   QAV++AP  +LA+QH+  + +        +I   ++ G      R K 
Sbjct: 379 IRAMLLAADNDMQAVLVAPTEVLAKQHHRNLTRMLGHELCAEIQPSLLLG------REKH 432

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             RIA G++ IIIGTH++F     ++ L LV++DEQHRFGV QR +L  K  +PH+L+++
Sbjct: 433 TLRIASGRSKIIIGTHSVFSKKTVFHNLALVVIDEQHRFGVGQRDELLLKGDSPHLLMLS 492

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI----DEVIERLKVVLSEGK 483
           ATPIPRT+ L+ L  I IS+I   P+G+  I T ++P+        EVI R+   + +G 
Sbjct: 493 ATPIPRTVALSLLNFIAISEIKTPPSGKAEISTHVVPLAEKPQWGREVIRRISEEIQKGH 552

Query: 484 KAYWICPQIEEKK--ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           + + + P IE+ +   ++  +++           + I+ +HG+++  + E  M+ F  G 
Sbjct: 553 QVFVVAPVIEQSRTGAASISALLRELEETPLLQGAKISRLHGKLTAAECEKSMEEFSCGA 612

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TT+IEVGIDV +A+ ++I +A+ FG+AQLHQLRGR+GRG     C+L+ + P  
Sbjct: 613 SDILLSTTMIEVGIDVPNATAMVIVSADRFGIAQLHQLRGRIGRGNLPGVCLLVTNAPEG 672

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
             + +RL ++  T DGF +AE D+K R+EG++LG+ QSG   + + + +    +L  AR 
Sbjct: 673 SAARSRLDLVARTHDGFSLAEIDMKMRREGDLLGLGQSGQGNYRLLRLDEDLQVLSDARL 732

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLY 688
            A+ I+  D  L   + + +R+ L  Y
Sbjct: 733 HAEGIMENDIKLE--KNKLLRLFLSQY 757


>gi|229820092|ref|YP_002881618.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
 gi|229566005|gb|ACQ79856.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
           12333]
          Length = 748

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 220/742 (29%), Positives = 352/742 (47%), Gaps = 63/742 (8%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
            ++ L  PL   R +G + +  L K+            DLL ++P  + +      +SE+
Sbjct: 14  LVSALDEPLK--RALGTRTAGALGKL------GLETVGDLLSHYPRRYAEPGRLTTMSEL 65

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEM---LKNVFFE 119
           +    VTI   +S     +  + +   +  ++ DG   ++L+FF     M   +++    
Sbjct: 66  TLGEHVTIVAQVSSVGVRRRNRGKGMIVEGVITDGVSRMSLVFFAPYAGMAHTIESQLPV 125

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE------AVYSLPTGLSVDLFKK 173
           G     TG + + + ++ + HP Y      D     +        +Y     +     + 
Sbjct: 126 GATALFTGTVNRYQGKLQLAHPSYRAIEDPDDEAEALVDASKPIPIYPASAAIDSLKIQA 185

Query: 174 IIVEALSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
            I   L  L    +P+ +  ++ + +       A   +H P      E    A+  L Y+
Sbjct: 186 AIRTVLDPLRREDVPDPVPDEVRRAQQLLGRFAALQQVHVPVT---MEEAYRAQAALRYE 242

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQ 290
           E    Q AL   R +   E                   +PF+ T  Q      +  +++ 
Sbjct: 243 EAFVLQAALARRRAEAAAEPATARPAAAVGLLAAFDARLPFTLTDGQRDVGVVLADELAA 302

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY------ 344
              M R+LQG+VGSGKT+VAL AM   V+AGGQA ++AP  +LA QH   I         
Sbjct: 303 SVPMQRLLQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHARTIAAMLGPLAE 362

Query: 345 -----TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  +    V ++TG+   A RR+AL   A G A I++GTHAL Q+ +Q+  L LV+
Sbjct: 363 GGMLTGADGATRVALLTGSQSAAQRRQALAEAASGAAGIVVGTHALIQEHVQFADLGLVV 422

Query: 400 VDEQHRFGVQQRLKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           VDEQHRFGV+QR  L  K  T+PH+L+MTATPIPRT+ +T  GD++ S +TE PAGR  +
Sbjct: 423 VDEQHRFGVEQRDALRAKGRTSPHLLVMTATPIPRTVAMTIFGDLESSTLTEIPAGRAGV 482

Query: 459 KTVIIPINRIDEVIERL---KVVLSEGKKAYWICPQIEE-------------------KK 496
            T ++P +    V          ++ G +A+ +CP+I +                   + 
Sbjct: 483 STHVVPADNAAWVARTWSRIAEEVAGGHRAFVVCPRISDTLTEPADVVDHLADDESGPES 542

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             +  +V +    L      +   I ++HGR++   K++ M  F +G   +L+ TTVIEV
Sbjct: 543 RHSIAAVEDVVAQLRGEPALAGVEIGMLHGRLTPDVKDAAMADFSSGKVPVLVTTTVIEV 602

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +A+++ + +A+ FGL+QLHQLRGRVGRG + + C+LL H      +  RL+ L  
Sbjct: 603 GVDVPEATVMAVLDADRFGLSQLHQLRGRVGRGSDPAVCLLLTHADPETPTGKRLAALAA 662

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           T DGF +AE DL+ R+EG++LG  QSG      + +      ++E AR DA+ ++T DP 
Sbjct: 663 TTDGFELAEVDLRDRREGDVLGAAQSGRTNSLKLLRVVQDRRVIERARTDARAVVTADPS 722

Query: 673 LTSVRGQSIRILLYLYQYNEAF 694
           L      +  I   L    E F
Sbjct: 723 LDDHPVLAAAIARTLAGEREEF 744


>gi|139436979|ref|ZP_01771139.1| Hypothetical protein COLAER_00112 [Collinsella aerofaciens ATCC
           25986]
 gi|133776626|gb|EBA40446.1| Hypothetical protein COLAER_00112 [Collinsella aerofaciens ATCC
           25986]
          Length = 725

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 223/721 (30%), Positives = 351/721 (48%), Gaps = 40/721 (5%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
           N L   ++  + V  K    L ++            DLL + P  ++D      I     
Sbjct: 18  NALGEDIARLKYVSGKREEALRRL------GIRTVGDLLLHIPHRYLDFTRSWSIEMAPI 71

Query: 67  ERIVTITGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
             + TI   + +    Q + R     + L D TG + + FF  +   +     +G ++ V
Sbjct: 72  GTVCTIIATVDRIVQKQPRPRMQVTEVSLVDETGVLQVAFF--RQPWIAQQLKQGDRLAV 129

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
            GK++       M  PH+            I  V+ +  G+S    ++I+  AL  +   
Sbjct: 130 MGKVEFAYGFKQMASPHFEKLEGGRA-AGTILPVHYVSDGVSRAWMRRIVSGALELVGNP 188

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            + I   L  K+   S A A   IH P    + +    AR RLAY+E L  Q+AL L   
Sbjct: 189 FDPIPAPLRAKRKLMSTARALRSIHFPSSMAERD---IARRRLAYEECLYLQLALRLRND 245

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR-MLRILQGDVGS 304
               E+    ++ G+    + + +PFS +  QE+A +DIL DM    R M R+L GDVG+
Sbjct: 246 GGLVEVVPYAHIAGEHLAALKQALPFSLSDEQEAAFQDILHDMCDDARVMNRLLLGDVGT 305

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT VA  A+A AV++G QA +MAP G+LA+Q+ +          I   ++TG  P A R
Sbjct: 306 GKTAVAACALAVAVDSGTQACVMAPTGVLARQYADKTGPLLSQAGISWALLTGATPAAER 365

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
            +   ++  G+  ++ GTHA+  + + +  L LV++DEQHRFGV QR  L  K     +L
Sbjct: 366 ERIHVQLESGELDVLFGTHAVLSEDVNFKHLSLVVIDEQHRFGVGQRNALRAKGPGADLL 425

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL L+  GD++ S I  +P     + T ++  +  D     ++    +G++
Sbjct: 426 VMTATPIPRTLALSVYGDLETSIIRHRPVPGAGVTTRVLTESSRDLAYGAIREAHEKGQQ 485

Query: 485 AYWICPQIEEKKESNFRSV------------------VERFNSLHEHFTS----SIAIIH 522
           AY ICP +E    ++                       +    L     +    +I  +H
Sbjct: 486 AYVICPLVEPSDSADELEDVPGIARDDEGRVTVPVPLHDTATELDRLRLALPGLTIERLH 545

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GRM   +K+ V+D+FK G   +L++TTV+EVG+DV +A++++IEN E FGLA LHQLRGR
Sbjct: 546 GRMRAGEKDRVIDAFKRGEIDVLVSTTVVEVGVDVPNATVMVIENGERFGLAALHQLRGR 605

Query: 583 VGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           VGRG    +C+++ H      +  +  RL  L+ T DGF +A+ DL+ R EGEILG +Q 
Sbjct: 606 VGRGGVAGTCLVMTHSKGNGGTSAAQDRLQSLEKTADGFTLAQMDLRLRHEGEILGYRQH 665

Query: 640 GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           G         +  + L+E A  DA  +L    +L SV  + +R  +   +Y   F+ +  
Sbjct: 666 GGVTLRFVDLDADEELIEWAHLDAVELLRYASNLDSVATRPLRDAVA-TRYRHIFKEVSG 724

Query: 700 G 700
           G
Sbjct: 725 G 725


>gi|332670950|ref|YP_004453958.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332339988|gb|AEE46571.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 750

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 214/731 (29%), Positives = 343/731 (46%), Gaps = 67/731 (9%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+++   V  +     + +            DLL ++P  + D      I+ +    
Sbjct: 22  LDTPVTS---VAPRAGKPFAAL------GLRTVGDLLRHYPFRYADPGTLTDIASLRVGD 72

Query: 69  IVTITGYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            VT+   + Q    + +       ++ + DG   + L+FF       + +   GR+   T
Sbjct: 73  TVTVVADVRQAVVRRARSTNAARLEVQITDGRSALQLIFFG-GARHHERLLVPGRRGLFT 131

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE-------AVYSLPTGLSVDLFKKIIVEAL 179
           G+I      + + HP Y   +  D    +          VY    GL        +  AL
Sbjct: 132 GQISAFGGHLQLAHPTYEMFDGDDEGERVAVERATWPRPVYRAGAGLDTTKIAAAVRTAL 191

Query: 180 SRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
             L    + + +   L ++ +   +      +H P    D+         L Y+E    Q
Sbjct: 192 GTLRDEDVVDPVPPALREQHALADLHRTLRDVHEPHTDDDWRRARDR---LRYEEAFVLQ 248

Query: 238 IALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
             L   R +   E       V   +       +PF+ T  Q    + I  ++++   M R
Sbjct: 249 AELARRRARAAAEPATARPPVADGVLAAFDARLPFTLTAGQREVGETIAAELARPVPMQR 308

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-----------YT 345
           +LQG+VGSGKTLVAL AM   V+AGGQA ++AP  +LA QH   ++              
Sbjct: 309 LLQGEVGSGKTLVALRAMLQVVDAGGQAALLAPTEVLAAQHARSLRALLGDLAEGGMLGG 368

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
                 V ++TG+ P A R+ AL   A G A I++GTHAL   ++Q+  L LV+VDEQH+
Sbjct: 369 APDATRVALLTGSQPAAARKAALLDAASGAAGIVVGTHALLSATVQFADLGLVVVDEQHK 428

Query: 406 FGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           FGV+QR  L  KA T+PH+L+MTATPIPRT+ +T  GD++ S + E PAGR  + T ++P
Sbjct: 429 FGVEQRDTLRAKAATSPHLLVMTATPIPRTVAMTVFGDLETSVLREVPAGRSGVTTHVVP 488

Query: 465 IN---RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR-------------------- 501
            +    +     R++  +++G +AY +CP+I+   E                        
Sbjct: 489 ADNPVWMSRTWARVREEVAQGGRAYVVCPRIDGDDERGADDVDLVADDVEVADAPARRPL 548

Query: 502 ----SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                V     +       ++ ++HGRM+  DK+  +  F +G   +L++TTV+EVG+DV
Sbjct: 549 RAVLDVAAELAAEPALEGVAVGVLHGRMTPEDKDRALADFASGAVPVLVSTTVVEVGVDV 608

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            +A+ +++ +A+ FG++QLHQLRGR+GRG     C+L+        +  R+  L  T DG
Sbjct: 609 PEATAMVVLDADRFGVSQLHQLRGRIGRGSAPGVCLLVSTAEPGTPAAERVDTLARTSDG 668

Query: 618 FLIAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS- 675
           F +A  DL+QR EG++LG  Q G      + +      L+E AR DA+  + QDP+LTS 
Sbjct: 669 FALASFDLEQRGEGDVLGASQWGGSSSLRLLRVTRDGDLIERARDDARAFVEQDPELTSW 728

Query: 676 -VRGQSIRILL 685
              G +IR LL
Sbjct: 729 PPLGDAIRALL 739


>gi|262340925|ref|YP_003283780.1| ATP-dependent DNA helicase RecG [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272262|gb|ACY40170.1| ATP-dependent DNA helicase RecG [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 686

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 231/704 (32%), Positives = 361/704 (51%), Gaps = 37/704 (5%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS- 65
           N     +   +G+  K +      +         + DLLF++P  +I       ISE+S 
Sbjct: 4   NIFQKSIEHLKGLSLKKAHLFHTELKL-----HTYEDLLFFYPKGYIHLPILKNISELSK 58

Query: 66  --EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 V I G I+       +K + +   L D TG I L++F +KT  LKNV  +   I
Sbjct: 59  NNNNNFVKILGEITNIEEINYKKGKIWIARLEDKTGFIELVWF-QKTNFLKNV-KKNITI 116

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V+GK+K  + +I M+HP+  +          I  VYS+P  L         +  L  L 
Sbjct: 117 IVSGKVKCFQKKIQMIHPNIQYSEKNY----SIYPVYSIPRNLKKKGINNSFMINL--LK 170

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR--ERLA----YDELLAGQ 237
            L E  + D+ +      + +  N+     K K F+  S +R  ++L     + ++    
Sbjct: 171 NLIEESKNDIEEFFFQEFLEKKLNV-----KKKSFDSNSFSRIFKQLISSTIFFKIEELF 225

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNI-PFSPTKSQESAIKDILQDMSQKNRMLR 296
           +  L    + K     P    GK      +   PF+ T+ Q+  +K+I  D+ +  +M R
Sbjct: 226 LLKLFFLSKRKTASSRPFPKLGKNFHNFYKYFLPFTLTEGQKKVLKEIWNDLKKPIQMNR 285

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQG+VG GKT++A+++M  A++ G Q+ +MAP  +LA QHY  IK+      I + ++T
Sbjct: 286 LLQGEVGCGKTIIAILSMLIALDNGFQSCLMAPTEVLAIQHYSSIKEMFSKIGIKIALLT 345

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL-KLT 415
            +   + R+     I  G+  I+IGTHAL Q+ +Q+  L L I+DE+ RFGV+QR     
Sbjct: 346 SSTSDSIRKCLYHEIFTGKISILIGTHALIQEKVQFKNLGLAIIDEEQRFGVEQRAKIWK 405

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           ++   PH+L+MTATPIPRTL      D++IS I E P GRKP+KT+       D+  E +
Sbjct: 406 KEDKFPHILIMTATPIPRTLAKIIYHDLNISIIKELPLGRKPVKTIHFWNQNRDKAFEII 465

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKES 532
           K  +S+G++ Y I P I    +    ++ + +  + E F +    I I+HG M+  +K  
Sbjct: 466 KNQISKGRQVYIIYPTINTSLKKKNMNLTKGYQEIKEKFKNLENKIGILHGEMNFQEKNI 525

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            M  F  G  K+LIATTVIEVG++V +AS+I+IENA+ FGL+QLHQLRGRVGRG   S C
Sbjct: 526 QMSRFLRGETKILIATTVIEVGVNVPNASVILIENADFFGLSQLHQLRGRVGRGIHQSYC 585

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           IL+    +S   + R+  +  T +G  IA+EDLK R  G+++G +QSG     I      
Sbjct: 586 ILITDQKISIEGFFRIKKMCETNEGLEIAKEDLKLRGGGDLIGTQQSGKNYLRIVNLIKD 645

Query: 653 DSLLEIARKDAKHILTQDPD-LTSVRGQSIRILLYLYQYNEAFQ 695
             L++     AK+   ++PD L + +     I    Y+ NE F+
Sbjct: 646 YKLIKDVFPIAKNFFIKNPDFLKNTKN----IFYKNYKMNEKFK 685


>gi|47570289|ref|ZP_00240938.1| ATP-dependent DNA helicase RecG [Bacillus cereus G9241]
 gi|47553053|gb|EAL11455.1| ATP-dependent DNA helicase RecG [Bacillus cereus G9241]
          Length = 527

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 193/520 (37%), Positives = 310/520 (59%), Gaps = 8/520 (1%)

Query: 171 FKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
            ++ I +AL      + E +   LL +       EA   +H P   +D      AR R  
Sbjct: 1   MRRFIAQALKEYGDSIVEVLPDGLLSRYKLLPRYEALRALHFPTGQEDL---KQARRRFV 57

Query: 230 YDELLAGQIALL-LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
           Y+E    Q+ +  L + + +   G    +  +  Q+ +  +PF  T +Q   + +I++DM
Sbjct: 58  YEEFFLFQLKMQTLRKMERENSKGTKKEIPSEELQEFIDALPFPLTGAQRRVVDEIMKDM 117

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           +   RM R+LQGDVGSGKT+VA I + AA  A  Q  +M P  ILA+QHY+ + +   + 
Sbjct: 118 TSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHF 177

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            + VE++T ++    RR+ L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV
Sbjct: 178 GMKVELLTSSVKGVRRREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGV 237

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            QR  L +K  +P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +
Sbjct: 238 AQRRVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDML 297

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMS 526
           D V+  ++  + +G++AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S
Sbjct: 298 DRVLGFVEKEIKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLS 357

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +KE +M  F     ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG
Sbjct: 358 SQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRG 417

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            E S C+L+  P  S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +
Sbjct: 418 SEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKV 476

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
           A        LE AR+DA  ++  +    + +  S+R  L 
Sbjct: 477 ADMVHDYRALETARQDAALLVDSEAFWHNDQYASLRTYLD 516


>gi|300781318|ref|ZP_07091172.1| DNA helicase RecG [Corynebacterium genitalium ATCC 33030]
 gi|300533025|gb|EFK54086.1| DNA helicase RecG [Corynebacterium genitalium ATCC 33030]
          Length = 720

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 215/693 (31%), Positives = 342/693 (49%), Gaps = 52/693 (7%)

Query: 35  NANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILL 94
           N        LL ++P  ++   Y   +        ++  G I         KR  +K  +
Sbjct: 39  NFGIETAEGLLEHYPRKYLHYGYGDALEGALPGDTISFIGVIQSTRMIH-GKRTIFKAQV 97

Query: 95  NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN------- 147
           +DG   I + FF  +      V  EG     TGK+        + HP +I  N       
Sbjct: 98  SDGRNTIDMSFFNAR--YAPRVLAEGTLGMFTGKLSYFNGMPQLQHPDFILLNQPSFSGE 155

Query: 148 ---------------------SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
                                 + +       VY+    +S       +   L  +  + 
Sbjct: 156 KSSGATHSSGSMKQLAAFGDPDEMLAGREWLPVYAAKKNVSTWTIMGAVATVLEHIGEVE 215

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E +       + F S+ +A   IH P           AR RL Y+E L   + + + R+ 
Sbjct: 216 EPL---GFTPEGFISLQDALWQIHLPGP----HGPDAARNRLKYNEALRVALIMAVRRED 268

Query: 247 FKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
                   +  V+ +   ++L  +PFS T  Q   + +I  D+ +   M R+LQG+VGSG
Sbjct: 269 TAHRTAPALPRVDKRNQAQLLSALPFSLTDGQLGVLDEITSDLQRTIPMTRLLQGEVGSG 328

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAH 363
           KT+VAL AM  AV+ G Q  ++AP  +L  QH + ++K    T +   V  +TG+MP   
Sbjct: 329 KTIVALAAMLQAVDNGMQCALLAPTEVLTLQHEKSLRKTLMRTGVHARVVALTGSMPTVQ 388

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA--TAP 421
           +++AL  I  G+A I++GTHA+ Q+S++++ L  V+VDEQHRFGV+QR  L  KA    P
Sbjct: 389 KQEALLAIMTGEADIVVGTHAIIQESVEFFNLGFVVVDEQHRFGVEQRDMLRDKAGDITP 448

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVV 478
           H+L+MTATPIPRT+ +T  GD+++S + E P GRKPI++ I+P      +     +++  
Sbjct: 449 HLLVMTATPIPRTIAITVFGDLEVSTLRELPGGRKPIQSAIVPEFKETWVARAWVKIREE 508

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++ G +AY +CP+IE         + ER  ++ E     I I+HGRM   DK+ +M  F 
Sbjct: 509 VAAGHQAYIVCPRIE--GPGGVLEMAERLQAV-ELQGLRIEILHGRMKGEDKDRIMSEFS 565

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +LI+TTVIEVG+DV +A+++++  +EHFG++QLHQLRGRVGRG   S C+     
Sbjct: 566 AGEIDVLISTTVIEVGVDVPNATVMMVRESEHFGVSQLHQLRGRVGRGGHQSLCLFHTFA 625

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLE 657
                   R+S +    DGF +AE DL+ R+EG++LG  QSG   +  +        +++
Sbjct: 626 EPDTPQLERVSRIAEVSDGFELAELDLEIRQEGDVLGTSQSGKERQLKLLNLVEDYEIIQ 685

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            A  DA  I+ +D +L   R  +  ++L  ++Y
Sbjct: 686 RAYDDAAEIVARDIELA--RSVTEEMILEEFEY 716


>gi|227494674|ref|ZP_03924990.1| possible DNA helicase RecG [Actinomyces coleocanis DSM 15436]
 gi|226831856|gb|EEH64239.1| possible DNA helicase RecG [Actinomyces coleocanis DSM 15436]
          Length = 697

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 208/701 (29%), Positives = 333/701 (47%), Gaps = 34/701 (4%)

Query: 2   RPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKI 61
           +P++LN    PL     +G + +  L+              DLL ++P  ++       +
Sbjct: 3   KPTWLN---TPLERL--LGSRTAKKLA------PLGLENTADLLHFYPRRYLHWGKLTPL 51

Query: 62  SEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEML---KNVF 117
             +      TI   +        +       + L DG   IT  FF      L   + + 
Sbjct: 52  YSLHPNEDATILASVQSQQLHANRNGGVRLNVELTDGHSTITATFFATHPAKLSVHQGLL 111

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE-AVYSLPTGLSVDLFKKIIV 176
             G +    G I + + ++ + HP +                VY   +        K + 
Sbjct: 112 KPGTQHLFAGTISQYRGQLQLTHPSFEEAGEDVERILTKPIPVYPASSKCPTWFTAKAVG 171

Query: 177 EALSRL--PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
             L ++    L +       +K     + EA   IH P    D      A+  L + E  
Sbjct: 172 IILDQMRQEDLLDPFTASEKEKYGLLDLIEAIEKIHRPNTDTDI---PKAKHTLKWVEAF 228

Query: 235 AGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             Q A    R    +     I     +I  +++ N  +  T  Q++AI ++L DMS++  
Sbjct: 229 ELQAAFAQQRHTNAQARAKTIPATATEIIPEVIENFGYELTGGQQTAIAEVLADMSREVP 288

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQ DVG+GKT+VA I M+  V AG QA ++AP  +LAQQH   +++      + VE
Sbjct: 289 MQRLLQADVGAGKTIVAGILMSVVVNAGYQAALLAPTEVLAQQHALNLRRLL---PVPVE 345

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+     R+   E    GQ  +++GTHAL QDS+ +  L LV++DEQHRFGV QR K
Sbjct: 346 LLTGSSKAGTRKHIAEITGSGQPAVLVGTHALLQDSLTFKNLALVVIDEQHRFGVAQREK 405

Query: 414 LTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP---INRID 469
           L +     PH+L MTATPIPRT+ +T  GD+DI++I E P GR P+KT  +       + 
Sbjct: 406 LRENQDFVPHLLSMTATPIPRTIAMTVFGDLDITEIRELPKGRIPVKTHTVNECNHAWMQ 465

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNF----RSVVERFNSLHEHFTSSIAIIHGRM 525
            +  R +  +  G + + + P+I +++  +         +R  +L       +  +HG++
Sbjct: 466 RLWVRSREEIEAGGRVFVVAPRIGDEESDSELASVTQTAQRLRNLPALQGIKVGELHGKL 525

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           +  +K  ++  F  G   LL+ TTVIEVG+D+ DAS+++I +A+ FGL+QLHQLRGRVGR
Sbjct: 526 TPEEKAQIISDFNTGQLSLLVTTTVIEVGVDIKDASLMVILDAQQFGLSQLHQLRGRVGR 585

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKF 644
           G + ++CI +Y    + +S  RL    +T  GF +AE DLK R EG +LG  QSG     
Sbjct: 586 GGQAATCIAVYSAEANPDSIERLEAFASTNSGFELAEYDLKLRCEGNVLGQSQSGKTTSL 645

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
              +      ++  AR  A  ++ +DP L      + R+ L
Sbjct: 646 KALRVLRDADIIASARDLALAVVAEDPQLEKRPELAARVGL 686


>gi|319948348|ref|ZP_08022492.1| ATP-dependent DNA helicase RecG [Dietzia cinnamea P4]
 gi|319437979|gb|EFV92955.1| ATP-dependent DNA helicase RecG [Dietzia cinnamea P4]
          Length = 756

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 218/735 (29%), Positives = 357/735 (48%), Gaps = 85/735 (11%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL-----QKRRPY 90
                  DLL   P  +     R    ++ +   VT+ G ++   +        Q R   
Sbjct: 27  FGHRTVGDLLHTLPRRYRQHGQRYDKRQLVDGERVTVIGTVTTARTRTYHTKKGQPREML 86

Query: 91  KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150
            + + DG  E  ++FF  ++  +K +   G      G +   +    + HP ++      
Sbjct: 87  TLTVEDGDTEFRVVFFAGRS--IKYLLPVGTLAMFDGTVSHFRRAPDLKHPEFLVLRPAS 144

Query: 151 VNFPLIE-----------------------------AVYSLPTGLSVDLFKKIIVEALSR 181
                ++                              VY+   G++       +V AL  
Sbjct: 145 GQGGQLKGSGDLAALARLAAEIDAEGGPSLFDRPLLPVYAAKEGVTSWDLLGAVVTALRA 204

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           L  + + ++  +        + EA    H P  A++ +       RL +DE LA Q+ L 
Sbjct: 205 LVPVVDPLDDTVRSAAGLMGLDEALRKAHLPENAREKDHAGH---RLRFDEALALQLLLG 261

Query: 242 LMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
             R+   ++      V +  I   +   +PF  T  Q++ +++I  D+++   M R+LQG
Sbjct: 262 ARRRFVARDPAPASPVRDDGIRAAMGARMPFELTDGQKAVLEEISADLARDEPMNRLLQG 321

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ----------- 349
           +VGSGKT+VAL+AM   ++AG Q V++AP  +LA QH+  +     +             
Sbjct: 322 EVGSGKTVVALLAMLQVLDAGRQCVMLAPTEVLAVQHHRSLTAMLGDLGERGRLGAPDEA 381

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
             V ++TG+M  A RR AL  I  G+A I++GTHAL QDS+ ++ L LV+VDEQHRFGV+
Sbjct: 382 TRVVLLTGSMSTAQRRAALLDIVTGEAGIVVGTHALIQDSVDFFDLGLVVVDEQHRFGVR 441

Query: 410 QRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           QR +L  K      PH+L+MTATPIPRT+ +T  GD+++S++ E P GR+PI T ++P  
Sbjct: 442 QRDRLRSKGRAGMVPHLLVMTATPIPRTIAMTVFGDLEVSELEELPGGRRPISTSVVPAR 501

Query: 467 RID----EVIERLKVVLSEGKKAYWICPQIE------------EKKESNFRSVVERFNSL 510
                     ER++  ++ G +AY +C +I+            +  E   R  +     L
Sbjct: 502 ERPAWLVRAWERVREEVAAGHRAYVVCSRIDADDGRSDDGTKGDDDEGGDRPPLVAAVDL 561

Query: 511 HEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           HE+ ++       I ++HGR+   +K++ M  F  G   +L++TTVIEVG+DV +A++++
Sbjct: 562 HEYLSTGPLAGLRIGLLHGRLPSEEKDATMADFAAGRLDVLVSTTVIEVGVDVPEATVMV 621

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           + +AE FG++QLHQLRGRVGRG     C+L+ +      S  RL  +  T DGF++A  D
Sbjct: 622 VMDAERFGVSQLHQLRGRVGRGGLPGLCLLVTNSRAGSRSMERLDAVAATTDGFVLAHLD 681

Query: 625 LKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L QR+EG++LG  QSG +    +        ++EIAR+ A+ IL  DP L      + R+
Sbjct: 682 LVQRREGDVLGDAQSGALSALRLLSVVDDGDVIEIARRHAEEILEADPGLHRHPALAERV 741

Query: 684 LL--------YLYQY 690
                     YL++Y
Sbjct: 742 RRLAGSEESDYLFRY 756


>gi|284045153|ref|YP_003395493.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283949374|gb|ADB52118.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 707

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 240/710 (33%), Positives = 375/710 (52%), Gaps = 43/710 (6%)

Query: 2   RPSFLN-PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           RPS L+ PL AP       G + +  L  +            DLL + P +   R     
Sbjct: 29  RPSRLSQPLDAP-------GPRAARALETL------GLHSVGDLLGHLPRA---RGEART 72

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKTEMLKNVF 117
           ++++ EE   TI   +   +S  +++R      + L+ D TG + + FF +    L   +
Sbjct: 73  VADLVEEETATIVVEVRSITSRPVRRRGMRPLVEALVADQTGPLKVTFFNQ--PWLVERY 130

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G ++ +TG++ +   ++    P      +Q V      A Y    G+S      +  E
Sbjct: 131 RPGTRVMLTGRLGQRSFKVSAHAP-----TTQQVAGVEQVAQYPASEGISSVQLLAMAQE 185

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
               +    E +   + + +  P    A   +H P  A+D       R RLAYDELL  Q
Sbjct: 186 HRGAIMDTIEPLPVAIRRAEELPDRHAALTAVHFPATARD---PVDGRRRLAYDELLLLQ 242

Query: 238 IALLLMRKQFKKEIGIPI--NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + LL  R + ++    P    V    A+ +   +PF+PT  Q+ A++ +  D++ +  M 
Sbjct: 243 LGLLRRRARREQATRAPALDGVRELTARWLEHGLPFAPTGDQQRAMEQVDADIAHERPMQ 302

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+L G+VGSGKT+VAL A+  AVE G Q  +MAP   LA+QH+  I+  T    + + ++
Sbjct: 303 RLLMGEVGSGKTVVALFALLRAVEQGWQGALMAPTETLAEQHFATIQALTAADTLQIALL 362

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG+ P A RR  L ++A G+  +++GTHAL +D +++ +L +V+VDEQHRFGV+QR  L 
Sbjct: 363 TGSTPAARRRDVLGKLASGELALVVGTHALIEDPVRFARLGVVVVDEQHRFGVRQRAALD 422

Query: 416 QKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-IDEV 471
            KA     PHVL MTATPIPRTL L   GD+D + + E P GR+PI+T +    R  +  
Sbjct: 423 AKAPDGLNPHVLHMTATPIPRTLALVEHGDLDHTALRELPRGRQPIETFVAGGERARERA 482

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH--EHFTSSIAIIHGRMSDID 529
            ER++  L EG++A+ +CP + E +    ++  E +  L   E     + ++HG+M   +
Sbjct: 483 YERIREELREGRQAFVVCPLVGESEALQAKAATEEYERLRRTEFKDFRVVLMHGQMRPRE 542

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+  M +F  G   +L+AT+VIEVGIDV +A+++++E+AE +G++QLHQLRGR+GRGE  
Sbjct: 543 KQEAMAAFAAGGADVLVATSVIEVGIDVPNATVMLVEDAERYGISQLHQLRGRIGRGEHA 602

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           S C LL+ P  S     RL  L    DGF +A  DL+ R+EG+I+G++Q G   + IA  
Sbjct: 603 SLC-LLFGPRDS----ARLKALAEHGDGFELARIDLELRREGDIVGVRQHGDVAYRIAIL 657

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
              + LLE A   A+ +L  DP+L +     +R  L      EA   I A
Sbjct: 658 PDDEDLLERAHARAEALLAADPELEAPEHALLRDALAAVFGPEAMAPIAA 707


>gi|295696051|ref|YP_003589289.1| DEAD/DEAH box helicase domain protein [Bacillus tusciae DSM 2912]
 gi|295411653|gb|ADG06145.1| DEAD/DEAH box helicase domain protein [Bacillus tusciae DSM 2912]
          Length = 689

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 210/686 (30%), Positives = 342/686 (49%), Gaps = 21/686 (3%)

Query: 4   SFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
           ++ +PL  P++   GVG + +  L  +            DLL+++P  + D   R    E
Sbjct: 7   AWQDPLARPVTFLPGVGPRRARALESL------GIRSIGDLLYHYPFRYEDLRLRRP-GE 59

Query: 64  ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRK 122
             + R V + G ++         R P   +  D  G  I  ++F  +   +       R+
Sbjct: 60  WEDGRRVAVEGTVAGKPRVSRGGRVPVVAVPMDVQGIRIHAVWF--RQAYVLERLTRYRR 117

Query: 123 ITVTGKIKKLKNRI--IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL- 179
             + G+ +  +  +    + P         V+   I  VY     L     +  I  AL 
Sbjct: 118 WRLAGRWQAARRSLVVEHMEPVSEGGAGHSVHAGRIVPVYQTSGDLRPKWLRTWIASALK 177

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
              P L + +      K      AEA   IH PR   D+E    ARERL Y+E L  Q+ 
Sbjct: 178 EAEPHLVDPLPWRWRAKLGLMDKAEALREIHFPR---DWERLGRARERLVYEECLRFQLP 234

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L   R + K      + +  +  ++ L  +PFSPT+ Q   ++ +  +++    M R++ 
Sbjct: 235 LQCARWRQKSRRAPALRLTRREWEEFLAALPFSPTEGQRRVLRAVAAEIAGHAPMRRLIL 294

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT++A  A+ AA  +GGQ V++AP  ILA+QH   +  +       V ++TG  
Sbjct: 295 GDVGSGKTVIAAAALFAAAMSGGQGVLLAPTEILAEQHARTLSGWFAGFSFPVWLLTGGT 354

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            +A R +    I+ G+  I++GTHA+    + Y  L + + DEQ RFGV QR+ L +   
Sbjct: 355 DRAERTRCFADISAGRPGILVGTHAVL-GHVPYSALRVAVCDEQQRFGVVQRMALLRPNE 413

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           + H+L M+ATPIPRTL +   GD+D+S +  +P       T  +P+ R +EV+  L+  L
Sbjct: 414 SIHLLSMSATPIPRTLAMALFGDVDVSFLPARPETPGRRVTRWLPLEREEEVVLELRQRL 473

Query: 480 SEGKKAYWICPQIEEKKESN--FRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDS 536
           S G++AY + P I    E     + V+  F+   E     ++ ++HGRMS  +KE VM +
Sbjct: 474 SRGERAYVVAPAIGRPGEQPESKKDVLSLFDWFREQLAGFAVGLLHGRMSPGEKERVMRA 533

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F  G  + L+ATTV+EVG+DV +A++++I +AE FGL+QLHQLRGR+GR  + + C +L 
Sbjct: 534 FAEGAIQALVATTVVEVGVDVPEATMMVIYHAERFGLSQLHQLRGRIGRSGQDAVCFVLT 593

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            P L+  +  R+   +   DG+L+A++DL+ R  G+  G+ QSG P F +  P   +  +
Sbjct: 594 GP-LTDIARQRIEAFQAVNDGYLLAKKDLELRGPGDWAGLAQSGWPDFALFDPIRDEIWM 652

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIR 682
             A+  A H++            S+R
Sbjct: 653 RRAKHHAHHLVRSREFWLLPEFASLR 678


>gi|28572355|ref|NP_789135.1| ATP-dependent DNA helicase RecG [Tropheryma whipplei TW08/27]
 gi|28410486|emb|CAD66872.1| ATP-dependent DNA helicase RecG [Tropheryma whipplei TW08/27]
          Length = 673

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 210/684 (30%), Positives = 351/684 (51%), Gaps = 40/684 (5%)

Query: 23  YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF 82
            +  L+K         +R IDLL Y+P  +I R    K+SE+     VTI G +      
Sbjct: 1   MASLLAKE-----FGISRVIDLLTYYPRRYICRGKLTKLSELIPGDEVTIVGRVLSTEQR 55

Query: 83  Q-LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
           +         + L+DG   I L+FF++           G     +GK+ +  N+  + HP
Sbjct: 56  KTFSGANFLSVTLSDGENIIQLVFFHQ--PWRAENLKPGACGLFSGKVTEFNNKKQLSHP 113

Query: 142 HYIFHNSQDVNFPL------IEAVYSLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLL 194
            Y   +S+     +      I  +Y            + +  AL  +     +++  +  
Sbjct: 114 EYELFSSEPTREQIQKWNEQIIPIYRACIACPSWKIARAVDLALEAVKGQTVDFMSGN-- 171

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
               + S+ +AF +IH+P   ++ E     +E L + E    Q ALL  ++   +    P
Sbjct: 172 --YGYMSVEKAFYVIHHPTDNEELEAA---KESLRFFEAFLLQSALLHRKRFRNRASATP 226

Query: 255 I-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
                G   ++    + FS T  Q  A  +I +D+S    M R+L G+VGSGKTLVA+ A
Sbjct: 227 FIRKNGGFLERFDARLEFSQTNDQLRAADEIFEDLSLSEPMTRLLHGEVGSGKTLVAIRA 286

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ---NTQIIVEIITGNMPQAHRRKALER 370
           M  A +   QAV++AP  +LA+QH+  + +        +I   ++ G      R K   R
Sbjct: 287 MLLAADNDMQAVLVAPTEVLAKQHHRNLTRMLGHELCAEIQPSLLLG------REKHTLR 340

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           IA G++ IIIGTH++F     ++ L LV++DEQHRFGV QR +L  K  +PH+L+++ATP
Sbjct: 341 IASGRSKIIIGTHSVFSKKTVFHNLALVVIDEQHRFGVGQRDELLLKGDSPHLLMLSATP 400

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI----DEVIERLKVVLSEGKKAY 486
           IPRT+ L+ L  I IS+I   P+G+  I T ++P+        EVI R+   + +G + +
Sbjct: 401 IPRTVALSLLNFIAISEIKTPPSGKAEISTHVVPLAEKPQWGREVIRRISEEIQKGHQVF 460

Query: 487 WICPQIEEKK--ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            + P IE+ +   ++  +++           + I+ +HG+++  + E  M+ F  G   +
Sbjct: 461 VVAPVIEQSRTGAASISALLRELEETPLLQGAKISRLHGKLTAAECEKSMEEFSCGASDI 520

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L++TT+IEVGIDV +A+ ++I +A+ FG+AQLHQLRGR+GRG     C+L+ + P    +
Sbjct: 521 LLSTTMIEVGIDVPNATAMVIVSADRFGIAQLHQLRGRIGRGNLPGVCLLVTNAPEGSAA 580

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            +RL ++  T DGF +AE D+K R+EG++LG+ QSG   + + + +    +L  AR  A+
Sbjct: 581 RSRLDLVARTHDGFSLAEIDMKMRREGDLLGLGQSGQGNYRLLRLDEDLQVLSDARLHAE 640

Query: 665 HILTQDPDLTSVRGQSIRILLYLY 688
            I+  D  L   + + +R+ L  Y
Sbjct: 641 GIMENDIKLE--KNKLLRLFLSQY 662


>gi|262203090|ref|YP_003274298.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262086437|gb|ACY22405.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 752

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 210/745 (28%), Positives = 354/745 (47%), Gaps = 82/745 (11%)

Query: 28  SKIIN-CGNANETRFIDLLFYHPSSFIDRHYRPKISEISE-ERIVTITGYISQHSSFQLQ 85
           +K++            +LL Y P  ++ R  +   +E+ E    +TI G I++     ++
Sbjct: 14  AKLVTALATLGVATVGELLHYTPRRYV-RQGQVSEAELPEAGEYLTIVGRITKADMIPMR 72

Query: 86  KRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
           KR     K+ + D        FF      ++     G ++ + G +K  + +I + HP +
Sbjct: 73  KRSGHFLKVTVTDEARTYEATFFN--PRFIRTKLKPGARVMMAGTVKFFREQIQLSHPEW 130

Query: 144 IFHNSQDVNFPL-----------------------------------IEAVYSLPTGLSV 168
           +     D                                        I  +Y     +  
Sbjct: 131 MVLPDGDPEVDRVVGSAMLTEMYAVEAELTDDQDGAGADFLAQFDRPIIPMYPATRDIQT 190

Query: 169 DLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
                 +   L+  P   + + +    ++   + AEA   IH P    D    S    RL
Sbjct: 191 WDIWGAVRRVLAHRPQTADALSEADRNRRGLITTAEAIEKIHLPETDDDITAASA---RL 247

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
            +DE LA Q  L   R   + E       V G +  ++ + +PF  T  Q + + ++ +D
Sbjct: 248 KFDEALAIQTVLAQRRLAGRNESAAACPHVPGGLEDRLAQRLPFELTAGQRTVVGELGED 307

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT-- 345
           ++Q   M R+LQG+VGSGKTLV+L+AM   V+ G Q  I+AP  +LA QHY  ++     
Sbjct: 308 LAQNRPMSRLLQGEVGSGKTLVSLLAMLRVVDNGHQCAILAPTEVLAAQHYRTMRTMLGD 367

Query: 346 ---------QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
                          + ++TG+M    +R+ L  +  G A I++GTHAL +++++++ L 
Sbjct: 368 LAEAGELSAAEGATSIALLTGSMKTKGKRQTLLDVVTGTAGIVVGTHALLEENVEFFDLG 427

Query: 397 LVIVDEQHRFGVQQRLKLT---QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +V+VDEQHRFGV+QR  L    +    PH L+MTATPIPRT+ +T+ GD+D S + E P 
Sbjct: 428 MVVVDEQHRFGVEQRDVLRGRGRDGVMPHFLVMTATPIPRTVAMTAFGDLDTSVLRELPL 487

Query: 454 GRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQI--------------EEKK 496
           GR+PI T ++P+     ++ V  R    ++ G++ Y +C +I              +  +
Sbjct: 488 GRQPITTNVVPMGNERWVERVWSRADEEIAAGRQVYVVCSRIGGDDETGGGKSGAAKNPE 547

Query: 497 ESNFRSVVERFNSLH--EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                SV++++ +L         I ++HGR+   +K  VMD+F  G   +L+ATTVIEVG
Sbjct: 548 ALKTISVLDQYEALLAGPLGGHRIGLLHGRLPADEKNEVMDAFGRGELDILVATTVIEVG 607

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +A++++I +AE FG++QLHQLRGRVGRG+    C+L+   P    S  RL+ +  +
Sbjct: 608 VDVPNATMMVIVDAERFGVSQLHQLRGRVGRGKHAGLCLLMTSAPQVSQSMQRLTAVAGS 667

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQS-GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            DGF +A  DL+QR+EG++LG  QS G              ++  AR  A+ ++  D  L
Sbjct: 668 NDGFELARVDLQQRREGDVLGSLQSGGTTSLRFLSLLDDADVIADARDLAEEVVGGD--L 725

Query: 674 TSVRGQSIRILLYLYQYNEAFQFIR 698
           T +  + +  L+      +   ++ 
Sbjct: 726 TLIEHRPLADLVDAILAPQKIAYLD 750


>gi|50954664|ref|YP_061952.1| ATP-dependent DNA helicase RecG [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951146|gb|AAT88847.1| ATP-dependent DNA helicase RecG [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 739

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 206/705 (29%), Positives = 337/705 (47%), Gaps = 58/705 (8%)

Query: 16  FRGV-GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74
             GV G + +    K             DLL ++P  +  R     ++ +  +  VTI  
Sbjct: 18  LTGVLGGRTAAAFEK-----AFGTRTVADLLSHYPRRYARRGELTALANLPLDENVTIIA 72

Query: 75  YISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            + +     ++ RR    ++ ++DG G +TL FF +           G +    GK+   
Sbjct: 73  EVLRVQERSMRARRGSILEVKISDGEGILTLTFFNQS--WRAKDLTPGARGIFAGKVSAY 130

Query: 133 KNRIIMVHPHYIFHNSQDVNF------------PLIEAVYSLPTGLSVDLFKKIIVEALS 180
           +  + + HP Y        N                  +Y     ++    +K +  AL 
Sbjct: 131 RGALQLAHPDYELFEPDAGNTVDSGSATAKEWAQTPIPIYPATGAVASWQVQKAVGLALD 190

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            L  + + +   ++ ++   S  +A   +H P+  KD +W          +  +     L
Sbjct: 191 ALGRIEDPVPAGIVAERGLISFRDALEGVHRPQ--KDSQWQRARDALRFQEAFVLQAALL 248

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
                           V G + ++    +PF+ T  Q     +I +D+     M R++QG
Sbjct: 249 QQRAAARAVAATPRRAVPGGLLERFDAGLPFALTDDQALVGGEIARDLDADAAMHRLVQG 308

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN---TQIIVEIITG 357
           +VGSGKTLVAL AM A  ++GGQ+ ++AP  +LA QH   I          +++  ++TG
Sbjct: 309 EVGSGKTLVALRAMLAVADSGGQSALLAPTEVLAAQHLRSIAAMLGPGLSIELMPTLLTG 368

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +  A R++AL R   GQ+ +++GTHAL  D++ +Y L LV+VDEQHRFGV+QR +L  K
Sbjct: 369 QLSAAERKRALLRTVSGQSRLVVGTHALLGDAVTFYDLGLVVVDEQHRFGVEQREELRAK 428

Query: 418 A-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI----DEVI 472
             T PHVL++TATPIPRT+ +T  GD+D+S I   PAGR+ I++ ++P+         + 
Sbjct: 429 GGTPPHVLVLTATPIPRTVAMTVFGDLDVSTIAHLPAGRQVIESFVVPLVDRPGWERRIW 488

Query: 473 ERLKVVLSEGKKAYWICPQI--EEKKESNFRSVVERFNSLHEHFTSS------------- 517
           ER    +++G++ + +CP I  +E +E   +   E   +      +              
Sbjct: 489 ERASEEIAKGRQVFVVCPAITGKETEEDTGQPEQETEAAFSPDAPARPIANVESVAAQVR 548

Query: 518 ---------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                    I ++HG +    K+  M SF  G   LLIATTVIEVG+DV +AS++I+ +A
Sbjct: 549 ADLLFASARIGVLHGGLPSEAKDETMRSFAVGDIDLLIATTVIEVGVDVPNASVMIVLDA 608

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           + FG++QLHQLRGRVGRG     C+L+        +  R+  +  T DGF +A  DL+ R
Sbjct: 609 DRFGVSQLHQLRGRVGRGGVPGLCLLVTAAGQDTLARERVEAVAATLDGFELANIDLELR 668

Query: 629 KEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           +EG++LG +QSG      + +      L+  AR  A+  L+  PD
Sbjct: 669 REGDVLGSRQSGGRSSLRLLRVASDGELIAEARVAAEETLSA-PD 712


>gi|297626613|ref|YP_003688376.1| ATP-dependent DNA helicase RecG [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922378|emb|CBL56950.1| ATP-dependent DNA helicase RecG [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 735

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 213/705 (30%), Positives = 354/705 (50%), Gaps = 59/705 (8%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
           G + +  LS              DL+ Y P  ++    R  +  +  +    +   ++  
Sbjct: 22  GSRTAKALS------AVGLHTVDDLMHYTPRDYLSGTQRTDLRTLVPDERAAVVAEVASL 75

Query: 80  SSFQLQ---KRRPYKILLNDGTGEITLLFFYRKT--EMLKNVFFEGRKITVTGKIKKLKN 134
           SS   +   +R   +  L DG G + L+FF +K   +  +     G +    GKI +  +
Sbjct: 76  SSAPFRGDPRRYRLEARLTDGRGFLNLIFFGKKYLVDYWQRQLSMGERGIFVGKIGEFND 135

Query: 135 RIIMVHPHYIFHNS----------------QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           ++ M HP ++  ++                Q V    I  +Y     L      + +   
Sbjct: 136 QLQMTHPDFVMLDAAGRIVGAADEKRALMAQVVTKSDIIGIYPARATLPTWQIAECVAMG 195

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L  L  + +++   L++++    + EAF+++H PR   D    +   +RL +DE L  Q+
Sbjct: 196 LDMLAGIVDFLPPSLVREEGLVGLWEAFDLVHRPRVPDDV---ARGLKRLKFDEALGLQL 252

Query: 239 ALLLMRKQFKKEIGIPI-NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            +   RK+  +     I +  G +       +PF+ T+ Q +   +I  DMS    M R+
Sbjct: 253 LMAYRRKESSRHRAPVITHRSGGLLDAFDAALPFTLTRGQRAVGDEIAADMSGSVPMARL 312

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-----------YTQ 346
           +QG+VGSGKT+VAL AM AAV+AG QAV++AP  +LA QH   I+K              
Sbjct: 313 VQGEVGSGKTVVALRAMLAAVDAGHQAVLLAPTEVLAGQHEGSIRKLLGPLAAAGTLDAP 372

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
                + ++TG +  A R++AL  I+ GQA +++GTHAL  +++ +  + L++VDEQHRF
Sbjct: 373 EHATHLVLLTGAVTGAARKQALAAISSGQAGLVVGTHALLSEAVHFSDIGLIVVDEQHRF 432

Query: 407 GVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           GV+QR  L  +    PH L++TATPIPR++ +T  GD+++S ++E P GR  ++T  +  
Sbjct: 433 GVEQRAVLADQGDHRPHQLVLTATPIPRSVAMTVFGDLELSTLSELPQGRAGVQTTAVLT 492

Query: 466 NR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS----- 516
            +    +  V +R+   +  G++A+ +CP++ +         V     + E   S     
Sbjct: 493 AQHPTWLARVWQRVLEEVQSGRQAFVVCPRVSQTDGGKSAEPVAAAQEVFERLGSHELKG 552

Query: 517 -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + ++HGRMS  DKES M +F  G   +L+ TTVIEVG+DV +AS +++ +A+ +G++Q
Sbjct: 553 LRLGLLHGRMSGADKESAMAAFAAGQTDVLVTTTVIEVGVDVPNASAMVVLDADRYGVSQ 612

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGR+GRG     C+ +        +  RL  +  T DGF +AE DL+QR+EG++LG
Sbjct: 613 LHQLRGRIGRGSFPGICLFVSGVDPRTPAAQRLQQVAQTNDGFAVAELDLEQRREGDVLG 672

Query: 636 IKQSGMPKFLIAQPELHD-SLLEIARKDAKHILTQ-----DPDLT 674
            +Q+G    L     L D  L+  AR  A  + T      DP L 
Sbjct: 673 AEQAGGRSTLRLLRVLDDADLIGRARDVAAALSTTALESLDPGLQ 717


>gi|25027994|ref|NP_738048.1| putative ATP-dependent DNA helicase recG [Corynebacterium efficiens
           YS-314]
 gi|259506386|ref|ZP_05749288.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
 gi|23493277|dbj|BAC18248.1| putative ATP-dependent DNA helicase recG [Corynebacterium efficiens
           YS-314]
 gi|259166027|gb|EEW50581.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
          Length = 707

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 215/691 (31%), Positives = 346/691 (50%), Gaps = 60/691 (8%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS- 80
           K +  + K +    A E     LL ++   +        +    E  +VT+ G +   + 
Sbjct: 17  KEARAIEKALGYTTAGE-----LLRHNVRKYSHHGSGVDLGAAEEGDLVTVVGEVVHAAK 71

Query: 81  SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
           S+    +  YKI++   + ++T+ FF      +  +  +G +   TGK+K  + +  + H
Sbjct: 72  SYTRTGKLLYKIIVAGESEQVTISFF--GAPYVPKLLPQGVRAMFTGKVKFFRRQPQLTH 129

Query: 141 PHYIFHNSQDVNFPL--------------------------IEAVYSLPTGLSVDLFKKI 174
           P +I          +                             +YS    ++       
Sbjct: 130 PEFIVIPDAGSGGKVTGTGGMKALAAYGDVEEVARSLVEREYLPIYSGTASMTTWRIMAA 189

Query: 175 IVEALSRLPVLPEWI---EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
           I   L  +P +PE +             PS  +A   IH+P      E      +RL Y+
Sbjct: 190 IQRVLETMPPVPEPLGDTPP------GMPSFEQALRGIHDPG----AEGPGAYVDRLKYN 239

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           E L+    + L R         P     G   + ++ ++PF  T+ Q++  ++I  DM Q
Sbjct: 240 EALSLATVMALRRADTASRKAPPCPRALGGQQRALIESLPFPLTEGQKTVTREISADMEQ 299

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           +  M R+LQG+VGSGKT+V+L+AM  A+++G Q  ++AP  +LA QH   +     +  +
Sbjct: 300 RTPMSRLLQGEVGSGKTIVSLLAMLQAIDSGRQCAMLAPTEVLATQHARSLTTILGDAGV 359

Query: 351 --IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              V ++TG+M    RR+AL  +  GQA I++GTHA+ QD+++++ L LV+VDEQHRFGV
Sbjct: 360 QASVVLLTGSMSTKVRREALLNVISGQADIVVGTHAIIQDTVEFFDLGLVVVDEQHRFGV 419

Query: 409 QQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           +QR +L  K      PH+L+MTATPIPRT+ +T  GD+ +S + E P GR+PI+T ++P 
Sbjct: 420 EQRDRLRTKGREGLTPHLLVMTATPIPRTIAMTVFGDLAVSTLRELPGGRRPIQTSVVPA 479

Query: 466 NR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
            +   +    ER+   +S G +AY +CP+IE   +     + +           ++ ++H
Sbjct: 480 EKPAWMKRAWERIGEEVSAGHQAYVVCPRIE--GDGGVVKIHDTLQH-RTFRDLTVGMLH 536

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GRM    K+ VM  F  G   +L++TTVIEVGIDV +A++++I  A+ FG++Q+HQLRGR
Sbjct: 537 GRMDPETKDQVMRDFATGGIDVLVSTTVIEVGIDVANATVMLILEADRFGVSQIHQLRGR 596

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-M 641
           VGRG   S C+L     L      RL  + NT DGF ++E DLK R+EG+ILG  QSG  
Sbjct: 597 VGRGGFASLCLLHTGFALDSPQMGRLQAIANTSDGFALSELDLKVRQEGDILGTSQSGSD 656

Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            K           ++E A  DA  ++ +DP 
Sbjct: 657 TKLQYLSLLTDQKIIERATADAAELVARDPQ 687


>gi|227832989|ref|YP_002834696.1| ATP-dependent DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182523|ref|ZP_06041944.1| ATP-dependent DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454005|gb|ACP32758.1| ATP-dependent DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 698

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 221/698 (31%), Positives = 353/698 (50%), Gaps = 63/698 (9%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
           KK +    +        E     LL ++P  +I  +    +    +   VTITG I    
Sbjct: 16  KKDAAAFKRAFGYTTCGE-----LLSHYPRDYIRHNKDVGLGGAEDGDHVTITGVIEDLR 70

Query: 81  SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
                K   + + ++ G   +   FF      ++ V   G ++ ++GK+K  +    + H
Sbjct: 71  VKHTSKAMVFILYMDSG---VQASFFN--AHYVQRVLGRGMRVMLSGKLKYFRGYPSLQH 125

Query: 141 PHYIFHNSQDVNFPLIE----------------------------AVYSLPTGLSVDLFK 172
           P ++  +       L++                             VY     ++     
Sbjct: 126 PDFLILDPGRYQESLLDSTTGQGTGSLKKLSQFGSLETFLQREWIPVYPASGKVTSWYIM 185

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFP-SIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
             I + L   P +PE ++           ++ +A   IH P             +RL Y+
Sbjct: 186 GAIHKVLEHTPPIPEPLD------YRMMVTLDQAVREIHEPGDNGPERAI----QRLKYN 235

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK-ILRNIPFSPTKSQESAIKDILQDMSQ 290
           E L+  + + L ++  K     P+    +  +  +L  +PF+ T  Q   I +I  D+  
Sbjct: 236 EALSVGLVMALRQRDVKARTATPMPAILEGYRDELLSGLPFALTDGQRRVIGEIDADLCG 295

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              M+R+LQG+VGSGKTLVA  AM  AV+AG QA ++AP  +LA QH   I   +    +
Sbjct: 296 TAPMMRLLQGEVGSGKTLVATCAMLQAVDAGKQAALLAPTEVLAAQHGASISA-SVPDGV 354

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V ++TG+M  A +RKAL  I  G+A I+IGTHA+ QDS++++ L LVIVDEQHRFGV+Q
Sbjct: 355 TVTVLTGSMKTAEKRKALLEIVSGEADIVIGTHAIIQDSVEFFDLGLVIVDEQHRFGVEQ 414

Query: 411 RLKLT---QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-- 465
           R  L    ++ T+PH+L+MTATPIPRT+ +T  GD+ +S + E P GRKPI + ++P   
Sbjct: 415 RDSLRTKTREGTSPHLLVMTATPIPRTIAMTVFGDLAVSTLKELPGGRKPILSAVVPEWK 474

Query: 466 -NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
              +   IER++  + +G +AY +CP+IE +      S+  R   L       + ++HG+
Sbjct: 475 PEWVRRAIERIREEVDKGHQAYIVCPRIEGEGGVETMSLQLRNLPLR---GLRVEMLHGK 531

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   DK+ VM+SF  G   +L+ATTVIEVG+DV +A++++I  +E+FG++QLHQLRGRVG
Sbjct: 532 MP--DKDQVMESFARGEIDVLVATTVIEVGVDVPNATVMLIRESENFGVSQLHQLRGRVG 589

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK- 643
           RG   S C+L         S+ R+  + +T  GF +AE DL+QR EG+ILG  QSG  + 
Sbjct: 590 RGGNESVCLLHTTAEPDSKSFRRIKAIADTPSGFDLAELDLQQRHEGDILGTLQSGTKRT 649

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
             +        ++E    DA  ++ ++P+L      ++
Sbjct: 650 LKLLDLINDRDIVERTHSDAAALVERNPELAEELTHNL 687


>gi|240168966|ref|ZP_04747625.1| ATP-dependent DNA helicase RecG [Mycobacterium kansasii ATCC 12478]
          Length = 738

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 213/740 (28%), Positives = 361/740 (48%), Gaps = 76/740 (10%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYIS 77
           G   +  L +             DLL ++P S+++   R  + +        +TI   I+
Sbjct: 12  GAPSAKPLEEE-----FGIRTVDDLLRHYPRSYVEGGARRGVGDERPEAGEHITIVDVIT 66

Query: 78  QHSSFQLQ---KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
           +  +F ++   +R+  +I L  G  ++T  FF    + +K    +  K+ ++G++   K 
Sbjct: 67  ETETFPMKKTPRRQCLRITLGTGRNKVTATFFN--ADYIKKDLTKNTKVMLSGEVGFFKG 124

Query: 135 RIIMVHPHYIFHNSQDVNFPLIE--------------------------AVYSLPTGLSV 168
            + + HP ++  +S D                                  +Y   T +  
Sbjct: 125 VMQLTHPAFLILDSPDGKNHGTRSLKSIADASKAISGEVAMEEFERRFFPIYPASTKVQS 184

Query: 169 DLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
               K + + L  L  + + +  D+  +    S  EA   I     A+D      ARERL
Sbjct: 185 WDIFKCVRQVLEVLDPVDDPLSPDVRAEHGLVSEDEALRAI---HLAEDEPDRRRARERL 241

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQD 287
            +DE +  Q AL+  R     E G P        A ++L  +PF  T  Q   +  + ++
Sbjct: 242 TFDEAVGLQWALVARRHGELSESGPPAPPRSDGLAAELLGRLPFELTAGQREVLAVLSEE 301

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           +S    M R+LQG+VGSGKT+VA++AM   V+AG Q  ++AP  +LA QH   I      
Sbjct: 302 ISATRPMNRLLQGEVGSGKTIVAVLAMLQMVDAGYQCALLAPTEVLAAQHLTSINDILGP 361

Query: 348 TQI-----------IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
             +            V ++TG+M    ++     +A G+  I++GTHAL QD+++++ L 
Sbjct: 362 LAMGGQLGGADNATRVALLTGSMTAGQKKDVRAAVAGGEVGIVVGTHALLQDAVEFHNLG 421

Query: 397 LVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ + + E P 
Sbjct: 422 MVVVDEQHRFGVEQRDQLRGKARAGITPHLLVMTATPIPRTVALTVYGDLETATLRELPR 481

Query: 454 GRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR----SVVE 505
           GR+PI T +I +      +D   +R+   ++ G++AY + P+I+E  E +         E
Sbjct: 482 GRQPITTNVIFVKDKPAWLDRAWQRIIEEVAAGRQAYVVAPRIDESDEPDKEPAGTKPAE 541

Query: 506 RFNSLHEHFTSS------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
               L+   +S       + ++HGR+S  +K++ M +F+ G   +L+ TTVIEVG+DV +
Sbjct: 542 TAEGLYARLSSRELANLRLGLMHGRLSADEKDAAMAAFRAGRIDVLVCTTVIEVGVDVPN 601

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A+++++ +A+ FG++QLHQLRGR+GRG   S C+L    P +  +  RL  +  T DGF 
Sbjct: 602 ATVMLVMDADRFGISQLHQLRGRIGRGAHPSLCLLASWVPPASPAGERLRAVAKTMDGFA 661

Query: 620 IAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
           +A+ DLK+RKEG++LG  QSG      +     H   +E AR              + + 
Sbjct: 662 LADLDLKERKEGDVLGRNQSGKAITLRLLSLAEHREYIEAARDFCVRAYQD-----AGKH 716

Query: 679 QSIRILLYLYQYNEAFQFIR 698
             + +L   +   +  +++ 
Sbjct: 717 PGLALLAARFTDTDRIEYLD 736


>gi|84498316|ref|ZP_00997113.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
 gi|84381816|gb|EAP97699.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
          Length = 735

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 221/721 (30%), Positives = 353/721 (48%), Gaps = 67/721 (9%)

Query: 37  NETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR--PYKILL 94
                 DLL Y P  +        ++       +     +   ++  ++ RR    + ++
Sbjct: 25  GIETVGDLLAYWPRRYQ--SPESNLAAARIGSYIVAVAEVKTATTRSMKNRRGRMLQAVI 82

Query: 95  NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP 154
            DG+ ++ + FF       +     G +    GK+    N++ + HP Y   +  D    
Sbjct: 83  TDGSKDLEITFFSSHGH--EGKLVPGARALFAGKVSAFNNKLQLAHPGYSLLSDFDRGDR 140

Query: 155 L-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
             +  +Y     L      + +   L  L   PE I +D+L ++       A   IH P 
Sbjct: 141 RNLIPIYKAVGNLHTWTVTECVRMVLDLLDESPEAIPEDVLDRRDLVDRMAALRGIHTPD 200

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFS 272
              + +      +R++Y+E L  Q+AL   R +Q K+     +   G +     + +PF+
Sbjct: 201 SRAEIDAAE---KRMSYEEALILQVALAQRRARQAKESTLARVPRPGGLLDAFDQRLPFT 257

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q    + +  +M++   M R+LQG+VGSGKT++A+ AM AAV+AGGQA ++AP  +
Sbjct: 258 LTAGQVDIGETLATEMARDVPMHRLLQGEVGSGKTVIAVRAMLAAVDAGGQAALLAPTEV 317

Query: 333 LAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           LA QH+  I                +    V ++TG+M    RRKA+  IA G A I+IG
Sbjct: 318 LASQHHRSITTMLGDLAEGGMLGGSDIGTRVTLLTGSMSTQSRRKAMLDIASGDAGIVIG 377

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSL 440
           THAL Q+ + +  L LV+VDEQHRFGV+QR  L  + A  PHVL+MTATPIPRT+ +T  
Sbjct: 378 THALIQEHVSFQDLALVVVDEQHRFGVEQRDALRGKAAQPPHVLVMTATPIPRTVAMTVF 437

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQI----- 492
           GD++ S ++E PAGR PI T ++P  +   +     R+   ++ G++AY +CP+I     
Sbjct: 438 GDMETSTLSELPAGRAPITTHVVPEAKPGWLQRTWVRIAEEVALGRQAYVVCPRIGDDDE 497

Query: 493 -----------------------EEKKESNFRSVVERFNSLHEHFT---------SSIAI 520
                                  +E  E +        +    H            SI I
Sbjct: 498 PDEDAEIFAPDAGGDPDSDGDGADEGAEGDAPPPRPLASVHRVHADLVANPALEGLSIEI 557

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGR+   +K+++M  F +G   +L++TTVIEVG+DV +AS++++ +A+ FG++QLHQLR
Sbjct: 558 LHGRLPADEKDAIMRDFASGAIDVLVSTTVIEVGVDVPNASVMVVMDADRFGVSQLHQLR 617

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG     C LL H   +   + RL  +  T DGF +A  DL+QR+EG+ILG  Q G
Sbjct: 618 GRVGRGGLPGLC-LLVHGGDADAPHERLDAVAGTTDGFELARIDLRQRREGDILGSSQHG 676

Query: 641 MP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
              +         + L+E AR+DA  ++  DPDL +     +  L++     E   ++  
Sbjct: 677 KRTQLQFLHVLEDEDLIEAAREDAFAVVADDPDLGA--HPRLAELVHARVDAEQAAYLER 734

Query: 700 G 700
           G
Sbjct: 735 G 735


>gi|296171354|ref|ZP_06852710.1| DNA helicase RecG [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894185|gb|EFG73943.1| DNA helicase RecG [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 739

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 216/714 (30%), Positives = 357/714 (50%), Gaps = 71/714 (9%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYI 76
           VG K +  L + +           DLL ++P ++ +   R    +        +TI   I
Sbjct: 12  VGAKAADQLDEEL-----GIRTVDDLLRHYPRTYTEGATRWDADDQRPPAGEHITIVDTI 66

Query: 77  SQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
           ++  ++ ++K      ++I L  G  ++T  FF      LK    +G K+ ++G++   K
Sbjct: 67  AETKTWPMKKTPKKDCHRITLGSGRNKVTATFFNAN--YLKKDLTKGAKVMLSGEVGFFK 124

Query: 134 NRIIMVHPHYIFHNSQD-----------------VNFPLIE---------AVYSLPTGLS 167
           N + + HP ++  +S D                      ++          +Y   T + 
Sbjct: 125 NVMQLTHPAFLILDSPDGKNRGTSSLKNIAIASQATSGELQMEAFERAFFPIYPATTKVQ 184

Query: 168 VDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER 227
                + + + L  L  +P+ +  +L  +    S   A   I     A+D      ARER
Sbjct: 185 SWDIFRCVRQVLDVLDPVPDPLPAELRGRYDLVSEDRALRDI---HLAEDESARRRARER 241

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQ 286
           L +DE +  Q AL+  R     E G P          +++  +PF  T  Q   ++   +
Sbjct: 242 LTFDEAVGLQWALVARRHSELSESGPPAPPRPDGLSAELMARLPFELTAGQREVLEVFTK 301

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           ++S    M R+LQG+VGSGKT++A++AM   V+AG Q  ++AP  +LA QH   I     
Sbjct: 302 ELSATRPMNRLLQGEVGSGKTILAVLAMLQLVDAGYQCALLAPTEVLAAQHLRSIDDVLG 361

Query: 347 NTQI-----------IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
              +            V ++TG+M  A +++  + +A GQA I++GTHAL QD+++++ L
Sbjct: 362 PLAMAGQLGGADNATRVALLTGSMTAAQKKQVRDEVASGQAGIVVGTHALLQDAVEFHNL 421

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E P
Sbjct: 422 GMVVVDEQHRFGVEQRDQLRAKARPGVTPHLLVMTATPIPRTVALTVYGDLETSTLRELP 481

Query: 453 AGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV---- 504
            GR+PI + +I +      +D    R+   +S G++AY + P+I+E  E           
Sbjct: 482 RGRQPITSNVIFVKDKPAWLDRAWRRITEEVSAGRQAYVVAPRIDENDEPEKEEPSAKPS 541

Query: 505 ERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           E    L+    S       + ++HGR+S   K++ M +F+ G   +L+ TTVIEVG+DV 
Sbjct: 542 ETAEGLYARLRSGELANLRLGLMHGRLSAEQKDAAMAAFRAGEIDVLVCTTVIEVGVDVP 601

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A+++++ +A+ FG++QLHQLRGR+GRG   S C+L      +  +  RLS +  T DGF
Sbjct: 602 NATVMLVMDADRFGISQLHQLRGRIGRGRHPSLCLLASWVSPASPAGRRLSAVAATLDGF 661

Query: 619 LIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDP 671
            +A+ DLK+R+EG++LG  QSG      +     H  ++E AR        +DP
Sbjct: 662 ALADLDLKERREGDVLGRNQSGRAVNLRLLSLADHREVIEAARDFCVRTYAEDP 715


>gi|223986081|ref|ZP_03636107.1| hypothetical protein HOLDEFILI_03415 [Holdemania filiformis DSM
           12042]
 gi|223961954|gb|EEF66440.1| hypothetical protein HOLDEFILI_03415 [Holdemania filiformis DSM
           12042]
          Length = 672

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 221/673 (32%), Positives = 346/673 (51%), Gaps = 33/673 (4%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
            K +  L K+    +         L   P  +  R   P   +   +  V + G I + +
Sbjct: 12  PKRTDLLEKMGLTDSDAI------LMCVPLRYQSREVIPY-DQWQVKSEVILEGQIVRPA 64

Query: 81  S--FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
                   +   K  L +      +  F R      +    G+++TV G   +  N+I  
Sbjct: 65  RTMRIRGGKTMTKFQLENDDDCFEITIFNRPWA---SNLTVGQRVTVIG-YYQGGNKITA 120

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKK 197
              +      Q      +  VY L  G++  + ++II +   +    + E +   L  + 
Sbjct: 121 TTYNSQPLQEQLG----VTPVYPLKEGMTQKMMQEIIKKTFITAQSHIEELVPPSLQAQY 176

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM-RKQFKKEIGIPIN 256
                  A   +H PR   +    +     L Y+E L   + L ++ R+Q +        
Sbjct: 177 RLLPKKTALRCLHFPRSMDEVYQAT---RTLKYEEFLKFHLVLEMIHRQQTETVTKKAKQ 233

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            + +    +  ++ F+ T  Q  A++DIL DM     M R++QGDVG GKTLVA +A+ A
Sbjct: 234 FDAEQVYALANHLSFAMTPDQFKAVRDILADMGSDKIMYRLIQGDVGCGKTLVASLALYA 293

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            V +G Q  IMAP  ILA+QH   +KK      I ++++  ++P A +++ L+ +  G  
Sbjct: 294 CVLSGHQGAIMAPTEILARQHAVSLKKLFAGLPIKIDVLCSSLPSAKKKEVLQAMKDGTL 353

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           +++ GTHALFQ  +++ KL LV+ DEQHRFGV+QR  L +K      LLM+ATPIPRTL 
Sbjct: 354 NLVAGTHALFQKEVEFAKLGLVVADEQHRFGVEQRRALKEKGEKVDFLLMSATPIPRTLA 413

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            T  GD+DIS I   P GRKPI+T ++  N +  ++ +L   L +G + Y +C  IEE +
Sbjct: 414 ATLYGDMDISTIMTMPPGRKPIQTRLVEENSLRTIMPQLLDQLEQGGQIYIVCSAIEENE 473

Query: 497 ESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             + R+V++ F SL E F   + + ++HGRMS  +KE  M  F+  T ++L++TTVIEVG
Sbjct: 474 NFDGRNVLDIFESLSEVFSGKAKLGLMHGRMSSEEKERAMFDFEANTTQILVSTTVIEVG 533

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           ++VV+A  ++I +A  FGL+QLHQLRGRVGRG     C LL        S  RL +++ T
Sbjct: 534 VNVVNACCMVIYDAHRFGLSQLHQLRGRVGRGRRQGYCFLLTASK-DPESLARLKIMEQT 592

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD-- 672
            DGF IA +DL+QR  GE+LG +QSG+P  ++        +++ AR+DA  IL  DPD  
Sbjct: 593 TDGFEIAMKDLEQRGPGELLGTRQSGVPGLILGDLVADTKIIQTARQDAVRILN-DPDNA 651

Query: 673 -----LTSVRGQS 680
                LT +R ++
Sbjct: 652 EFQSLLTKIRKEN 664


>gi|254821178|ref|ZP_05226179.1| ATP-dependent DNA helicase RecG [Mycobacterium intracellulare ATCC
           13950]
          Length = 739

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 211/741 (28%), Positives = 361/741 (48%), Gaps = 76/741 (10%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYI 76
           VG K    L ++            DLL ++P S+ +   R    +        +TI   I
Sbjct: 12  VGGKVVELLDEV-----FGIRTVNDLLRHYPRSYTEGASRWDADDERPPAGEHITIVDTI 66

Query: 77  SQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
           +   +F ++K      ++I L  G  ++T  FF      +K     G K+ ++G++   +
Sbjct: 67  TDTETFPMKKTPKKVCHRITLGSGRNKVTATFFNAN--YIKKDLTTGTKVMLSGEVGFFR 124

Query: 134 NRIIMVHPHYIFHNSQD------VNFPLIE--------------------AVYSLPTGLS 167
           N + + HP ++  ++ D      V+   I                      +Y+    L 
Sbjct: 125 NVMQLTHPAFLLLDTPDGKNRGTVSLKSIANASHATTGEDIADAYQRHFFPIYAASAKLQ 184

Query: 168 VDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER 227
                  + + L  L  +P+ + +DL  K    S  +A   I     A+       ARER
Sbjct: 185 SWTIFATVRQVLDVLDPVPDPLPEDLRAKFGLVSEDQALRDI---HLAESEPRRQQARER 241

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQ 286
           L +DE +  Q AL+  R     E G P        A ++L  +PF  T  Q   +  + +
Sbjct: 242 LTFDEAVGLQWALVARRHGELSESGPPAPPRSDGLAAELLGRLPFELTAGQRDVLGVLSE 301

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
            ++    + R+LQG+VGSGKT+V+++AM   V+AG Q  ++AP  +LA QH   I+    
Sbjct: 302 GLASNRPLNRLLQGEVGSGKTIVSVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLG 361

Query: 347 NTQI-----------IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
              +            V +++G+M  A +++    IA G+  I++GTHAL QD++++  L
Sbjct: 362 PLAMAGQLGGADRATRVALLSGSMTAAQKKQIRSEIAGGEVGIVVGTHALLQDAVEFDNL 421

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E P
Sbjct: 422 GMVVVDEQHRFGVEQRDQLRAKARPGVTPHLLVMTATPIPRTVALTVYGDLETSTLRELP 481

Query: 453 AGRKPIKTVIIPINRID----EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            GR+PI + +I +           +R+   ++ G++AY + P+I+E  +   +    +  
Sbjct: 482 RGRQPITSNVIFVKDKPTWLGRAWQRISEEVAAGRQAYVVAPRIDEDDDPGAQEQNAKAP 541

Query: 509 SLHEHFTSSI----------AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
              E   + +           ++HGR+S  +K++VM +F+ G   +L+ TTVIEVG+DV 
Sbjct: 542 ETAEGLYARLRSGELAHLRLGLMHGRLSGDEKDAVMAAFRAGEIDVLVCTTVIEVGVDVP 601

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +A+++++ +A+ FG++QLHQLRGR+GRG   S C+          +  RL+ +  T DGF
Sbjct: 602 NATVMLVMDADRFGISQLHQLRGRIGRGRHPSLCLFASWSAPDSPAGRRLAAVAGTLDGF 661

Query: 619 LIAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            +A+ DLK+R+EG++LG  QSG      +     H   +E AR+      ++DP      
Sbjct: 662 ALADLDLKERREGDVLGRNQSGRAITLRLLSLADHLEYIEAAREFCVRTYSEDPSDPG-- 719

Query: 678 GQSIRILLYLYQYNEAFQFIR 698
              + +L   +   +  +++ 
Sbjct: 720 ---LAVLAARFTDTDRIEYLD 737


>gi|257791106|ref|YP_003181712.1| helicase domain-containing protein [Eggerthella lenta DSM 2243]
 gi|317488170|ref|ZP_07946742.1| ATP-dependent DNA helicase RecG [Eggerthella sp. 1_3_56FAA]
 gi|257475003|gb|ACV55323.1| helicase domain protein [Eggerthella lenta DSM 2243]
 gi|316912715|gb|EFV34252.1| ATP-dependent DNA helicase RecG [Eggerthella sp. 1_3_56FAA]
          Length = 734

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 211/736 (28%), Positives = 351/736 (47%), Gaps = 57/736 (7%)

Query: 2   RPSFLNP---LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR 58
           RP  L     L   +   R V    +  L  +            DL  + P  +ID   +
Sbjct: 5   RPDRLAATLALDESVGRVRLVSPARARALDGL------GIRTVRDLATHFPRRYIDLSRK 58

Query: 59  PKISEISEERIVTITGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVF 117
             ++        T+ G + +    + + R     + L DGTG + +  F  +   L +  
Sbjct: 59  ATVAAGVIGEQCTVEGAVHEIKLKKPKPRLTLVELSLVDGTGVLMVTCF--RQPWLMDQV 116

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G +I V GK++       M +P+    + +     +I  V+     +S    ++++  
Sbjct: 117 KPGMRIAVAGKLEFNYGFKRMTNPYLEVLDGEGAAEGMIIPVHPACEKISAAWMRRLVGN 176

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           AL  +  L + +  +L  K    S   A + IH P      +  + AR RL Y+ELL  +
Sbjct: 177 ALEAVCGLHDPLPLELRAKYRLMSRGAALSCIHFPHA---MDEVAEARRRLVYEELLLLE 233

Query: 238 IALLL-MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + L+   R++      +   V+G     +   +PF  T  QE A +DIL  ++       
Sbjct: 234 LMLMRESRERTDGCEPVVHAVDGPRMAALAEAVPFRLTDEQEEAKRDILAALAAPQTANH 293

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L GDVG+GKT+VA  A+AAA + G QA++MAP  +LA+QH + +        I   ++T
Sbjct: 294 LLLGDVGTGKTVVAAFALAAAADTGAQALLMAPTEVLARQHGKSLGPLFDAAGISWAVLT 353

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+ P A R   L R+A G   ++IGTHAL +D +   +L LV++DEQ RFGV+QR KL  
Sbjct: 354 GSTPSAEREAVLARVAEGSVDVLIGTHALLEDDVAPRRLSLVVIDEQQRFGVEQRAKLLA 413

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K  AP  L +TATPIPR+L L   G++ +S +  +P       T +          +  +
Sbjct: 414 KGDAPDALYLTATPIPRSLALALFGNLTLSYLKHRPHDAAQRATFVHQKADRGHAYDAAR 473

Query: 477 VVLSEGKKAYWICPQI--------------------------------------EEKKES 498
             L+ G++ Y +CP I                                      ++ +  
Sbjct: 474 AALARGEQVYVVCPLIGQDSGERDAKAADGGSGGRRREADEEAYEYAAISIETDDDLEGD 533

Query: 499 NFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           +  +  +  + L     +   + ++HGRM   +K++VM  F++   ++L+ATTVIEVG+D
Sbjct: 534 DVAAAAKEASYLQGTVFADYRVELLHGRMPASEKQAVMQRFRDNETQVLVATTVIEVGVD 593

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +A+++I+E+A+ FGL+QLHQLRGRVGR  E ++ + L     S  + TRLS + +T+D
Sbjct: 594 VPNATVMIVEDADRFGLSQLHQLRGRVGR-GEKAAEVHLVSASKSDAALTRLSAMVDTDD 652

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           GF +A  DL  R+EG+ILG +Q G     +       +++E A  DA  IL +DP+L   
Sbjct: 653 GFELASYDLSLRREGDILGNRQHGASGLKLVNVMRDGAVIEAAHADAAAILEEDPNLELP 712

Query: 677 RGQSIRILLYLYQYNE 692
             +++   + +   N+
Sbjct: 713 AHRALAREVRIVYAND 728


>gi|254797042|ref|YP_003081879.1| ATP-dependent DNA helicase RecG [Neorickettsia risticii str.
           Illinois]
 gi|254590278|gb|ACT69640.1| ATP-dependent DNA helicase RecG [Neorickettsia risticii str.
           Illinois]
          Length = 675

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 237/669 (35%), Positives = 353/669 (52%), Gaps = 24/669 (3%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIIN--CGNANETRFIDLLFYHPSSFIDRHYRPKISE 63
           +  LF P+        K  L   K++   C   + +R +DLL Y P  F++R     I+ 
Sbjct: 1   MADLFDPID-------KIFLLEEKMLEVVCNLVSGSRVVDLLLYKPRGFVNRCNFKAIAN 53

Query: 64  ISEERIVTITGYIS-QHSSFQLQKR--RPYKILLNDGT-GEITLLFFYRKTEMLKNVFFE 119
             E   VTI          F   +R  R +K    D     + ++FF +    L+     
Sbjct: 54  SVEGEFVTIEARYEGSKEHFHRFRRVKRFHKFFFKDKNEDSLEVIFFAK--TYLQRKLKI 111

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G    V G   ++     M HP  I   S+       E  Y L  G++   F  ++   L
Sbjct: 112 GEWYLVNG---RMGASAQMFHPDKILRLSELAKLSAFEPKYRLSDGVTNHQFLSLVDRLL 168

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
                  EW+EK  L+K S  S  +A   +H+P    +FE      +RLAYDE+LA  + 
Sbjct: 169 KSSKPPEEWLEKASLKKNSLISWGKAIEQLHHPSSEVEFEQAC---KRLAYDEILAMHLV 225

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
              +  Q   +   PI  +G +   +   +PFS T  QE  I+ I     Q  RM+ +LQ
Sbjct: 226 NNSLYAQVLNQKKEPIKGDGSMTALLRSRLPFSLTAGQEEVIEKIHVLQGQTVRMIALLQ 285

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLV + AM  AVE G Q V+++P  +LA+QH+E ++K     ++   ++TG  
Sbjct: 286 GDVGSGKTLVVIFAMLNAVEMGKQVVLLSPTIVLAKQHFEVLQKL--VPELKPVLLTGGQ 343

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               R + L+ I  G   +I+ THA+    + ++ L L+++DEQHRFG  QR KL ++  
Sbjct: 344 VACSREQFLQDIRSGNVKVIVATHAILAVEVLFFDLGLLVIDEQHRFGANQRTKLIRENP 403

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              ++L++ATPIPRT+     G I +  + EKP  R  + T  +  ++I  +IER++V+L
Sbjct: 404 GADLVLVSATPIPRTIGQVLFGSITLLNLREKPKSRPLVTTSTVTKSKITTLIERIRVIL 463

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +G K +WICP IEE + S   SV ERF  L +HF   +  +HG +S    E  +  F+N
Sbjct: 464 GKGSKVFWICPVIEESENSKVVSVTERFRLLKKHFADEVDCVHGVLSAQKMEEKLTLFRN 523

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
           G  K+L+ATTV+EVG+D+ D  +I+IE+A+HFGLAQLHQLRGRVGRG + S CILLY   
Sbjct: 524 GKTKILLATTVVEVGVDIPDVDVIVIEDADHFGLAQLHQLRGRVGRGNKNSFCILLYDSQ 583

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            +++N   RL +L+ + DGF IAEED K R  G+I G++QSG  KF         S  + 
Sbjct: 584 KITENGKKRLKILRESSDGFFIAEEDFKLRGVGDIFGVRQSGFYKFKFLDRPFEHSFFDS 643

Query: 659 ARKDAKHIL 667
           A ++A+  +
Sbjct: 644 ASREAQDAI 652


>gi|145224791|ref|YP_001135469.1| ATP-dependent DNA helicase RecG [Mycobacterium gilvum PYR-GCK]
 gi|145217277|gb|ABP46681.1| ATP-dependent DNA helicase RecG [Mycobacterium gilvum PYR-GCK]
          Length = 753

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 217/729 (29%), Positives = 355/729 (48%), Gaps = 87/729 (11%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID----RHYRPKISEISEERIVTITG 74
           +G K +  L + +           DL+ Y P  + D    R     + ++ E   VT   
Sbjct: 12  IGAKAARPLEEHL-----GLHTVGDLVRYFPRKYSDAMTVRGEGEDL-DLEEGEHVTFVD 65

Query: 75  YISQHSSFQLQK---RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            I++    +++    R    + L D   ++T  FF    + LK    EG K+ ++G++  
Sbjct: 66  VIARAELKRVRNQPSREFLVVTLRDRRPKVTATFFN--PKWLKKTLVEGTKVMLSGEVGY 123

Query: 132 LKNRIIMVHPHYIFHNSQDVNF-------------------------PLIEAVYSLPTGL 166
            +  + + HP ++  +S                                   +YS  + +
Sbjct: 124 FRGTMQLTHPAFMVLDSASGKTVGTKSLTSIASTSGATGDDLLAEFEKNYFPIYSATSKV 183

Query: 167 SVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226
                   + +AL+ L  +PE +    +++    S  EA   +H    A+D    + A E
Sbjct: 184 QTWDIYACVRQALAVLDPVPETLPDWFVREHDLMSEDEALRAVHLSENAED---RARAIE 240

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDIL 285
           RL +DE    Q  L++ R       G P    G      +   +PF  T  Q+  +  I 
Sbjct: 241 RLTFDEAAGLQWGLVVRRNSELGASGPPAPRRGGGLVDAMTAQLPFELTAGQQEVLAVIS 300

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY- 344
           +++     M R+LQG+VGSGKT+V+L+AM   ++AG Q  ++AP  +LA QH   I+   
Sbjct: 301 EELGAARPMNRMLQGEVGSGKTVVSLLAMLQMIDAGYQCALLAPTEVLAAQHSSSIRSML 360

Query: 345 ----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
                            V ++TG+M  A +R A   +A G A I+IGTHAL  DS+++  
Sbjct: 361 GALAGAGELGGAEQATRVSLLTGSMSAAQKRDARREVASGVAGIVIGTHALLSDSVEFDN 420

Query: 395 LILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           L +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E 
Sbjct: 421 LGMVVVDEQHRFGVEQRDRLRAKAPAGLTPHLLVMTATPIPRTVALTIYGDLETSTLREL 480

Query: 452 PAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV--- 504
           P GR+PI T  I I      +D    R+   ++ G++AY +  +I+E   ++ ++     
Sbjct: 481 PRGRRPITTNTIFIRDKPAWLDRAWTRIAEEVAAGRQAYVVASRIDENDTADGKADGKAK 540

Query: 505 -------------------ERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543
                              +    L     S +   ++HGR+S  +K++VM +F+ G   
Sbjct: 541 KAKKTSESDQQGPPPVTVVDLLARLQRGPLSGVRLGLMHGRLSGDEKDAVMAAFRAGDID 600

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ TTVIEVG+DV +A+++++ +A+ FG++QLHQLRGR+GRGE  S C+L  + P S  
Sbjct: 601 VLVCTTVIEVGVDVPNATVMVVMDADRFGISQLHQLRGRIGRGEHPSLCLLATNLPESSK 660

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKD 662
           +  RL+ +  T+DGF +AE DL++R EG++LG+ QSG P          H  ++  AR+ 
Sbjct: 661 AGQRLTAVAATQDGFELAELDLRERSEGDVLGLFQSGRPVTLRFLSLADHVEIILSAREL 720

Query: 663 AKHILTQDP 671
            + +   DP
Sbjct: 721 CETVYASDP 729


>gi|315604396|ref|ZP_07879462.1| DNA helicase RecG [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314102|gb|EFU62153.1| DNA helicase RecG [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 715

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 216/696 (31%), Positives = 335/696 (48%), Gaps = 38/696 (5%)

Query: 23  YSLFLSK--IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
            +L L K  +  C +A      +LL   P  +        +S + E   VTI   ++   
Sbjct: 11  LALRLPKKTVKACESAGVHTVGELLSVPPRRYDHWGRLTPMSSLREGEDVTILAEVASAH 70

Query: 81  SFQLQKRR--PYKILLNDGTGEITLLFFYRKTEML---KNVFFEGRKITVTGKIKKLKNR 135
               +       +  L DGT  ++  FF R    L   + +   GR     GK+   + +
Sbjct: 71  LVANRSGSGVRLEARLTDGTQFLSATFFARNHYKLAPIERLLTPGRSFLFAGKVGAYRGK 130

Query: 136 IIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEK 191
           + + HP +   +  DV         +YS    L+     + I   L  +    +P+ +  
Sbjct: 131 LQLTHPSFEGVDGDDVERVASRPIPIYSAMGSLASWAIARAIAMVLDHVEDSDVPDAVPS 190

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
            +  +    + A+A   +H P    D+     AR  LA+ E    Q+ L+  R   +   
Sbjct: 191 AVRARNGVLAHADALRRLHQPETDDDY---RQARRSLAFAEAFVLQVGLVAARAGVRAVP 247

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                    + + +   +PF  T SQ  A+  I  D++    M R+LQGDVGSGKT+VAL
Sbjct: 248 APASPASPALVESLTALLPFELTDSQREAVARIGVDLASTVPMQRLLQGDVGSGKTVVAL 307

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII---VEIITGNMPQAHRRKAL 368
           IA+   V AG Q V +AP  +LA+QH   ++            V ++TG+ P A RR+ +
Sbjct: 308 IALLQVVAAGHQGVFVAPTEVLAEQHAASLRSLLAPLGERAPDVRLLTGSTPPAARREIV 367

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL---TQKATAPHVLL 425
             +A     I++GTHALFQD ++   L LV+VDEQHRFGV+QR  L    +   A H L+
Sbjct: 368 AALASAHPLIVVGTHALFQDGVRVPGLGLVVVDEQHRFGVEQRAALSGAREDGRAVHELV 427

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEG 482
           MTATPIPRT+ +T  G +D +++  KP  R P+ T +        +    +R    +++G
Sbjct: 428 MTATPIPRTIAMTVFGGLDDTRMVGKPKDRSPVATYLADATNGAWVRRAWQRAAEEIAQG 487

Query: 483 KKAYWICPQI---------EEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDK 530
           ++ Y +CP+I         E++      SV E    L         +I  + GR     K
Sbjct: 488 RRVYVVCPRIDPSDEVADAEDEDAPPLASVAEVARYLRSQPALAGVAIHELTGRTPAGVK 547

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             +M+ F  G   LL+ATTV+EVG+DV +A++++I +++ FGLAQLHQLRGRVGR    S
Sbjct: 548 AQIMEDFSCGRAPLLVATTVVEVGVDVPEATLMVILDSQQFGLAQLHQLRGRVGRSSVPS 607

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQP 649
            CI ++   L++    RL     T DGF +AE DL+ RKEG+++G  QSG          
Sbjct: 608 LCIAMHRHELTEAGRARLEAFAQTNDGFELAEADLRLRKEGDVVGAGQSGTATHLRYLSV 667

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
              ++L+  ARK+A+ +L +DP L       +R LL
Sbjct: 668 LRDEALIRAARKEAEALLNEDPTLGG--HPELRRLL 701


>gi|325830867|ref|ZP_08164251.1| putative ATP-dependent DNA helicase RecG [Eggerthella sp. HGA1]
 gi|325487274|gb|EGC89717.1| putative ATP-dependent DNA helicase RecG [Eggerthella sp. HGA1]
          Length = 734

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 210/736 (28%), Positives = 351/736 (47%), Gaps = 57/736 (7%)

Query: 2   RPSFLNP---LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR 58
           RP  L     L   +   R V    +  L  +            DL  + P  +ID   +
Sbjct: 5   RPDRLAATLALDESVGRVRLVSPARARALDGL------GIRTVRDLATHFPRRYIDLSRK 58

Query: 59  PKISEISEERIVTITGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVF 117
             ++        T+ G + +    + + R     + L DGTG + +  F  +   L +  
Sbjct: 59  ATVAAGVIGEQCTVEGAVHEIKLKKPKPRLTLVELSLVDGTGVLMVTCF--RQPWLMDQV 116

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G +I V GK++       M +P+    + +     +I  V+     +S    ++++  
Sbjct: 117 KPGMRIAVAGKLEFNYGFKRMTNPYLEVLDGEGAAEGMIIPVHPACEKISAAWMRRLVGN 176

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           AL  +  L + +  +L  K    S   A + IH P      +  + AR RL Y+ELL  +
Sbjct: 177 ALEAVRGLHDPLPLELRAKYRLMSRGAALSCIHFPHA---MDEVAEARRRLVYEELLLLE 233

Query: 238 IALLL-MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + L+   R++      +   V+G     +   +PF  T  QE A +DIL  ++       
Sbjct: 234 LMLMRESRERTDGCEPVVHAVDGPRMTALAEAVPFRLTDEQEEAKRDILAALAAPQTANH 293

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L GDVG+GKT+VA  A+AAA + G QA++MAP  +LA+QH + +        I   ++T
Sbjct: 294 LLLGDVGTGKTVVAAFALAAAADTGAQALLMAPTEVLARQHGKSLGPLFDAAGISWAVLT 353

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G+ P A R   L R+A G   +++GTHAL +D +   +L LV++DEQ RFGV+QR KL  
Sbjct: 354 GSTPSAEREAVLARVAEGSVDVLVGTHALLEDDVAPRRLSLVVIDEQQRFGVEQRAKLLA 413

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K  AP  L +TATPIPR+L L   G++ +S +  +P       T +          +  +
Sbjct: 414 KGDAPDALYLTATPIPRSLALALFGNLTLSYLKHRPHDAAQRTTFVHQKADRGHAYDAAR 473

Query: 477 VVLSEGKKAYWICPQI--------------------------------------EEKKES 498
             L+ G++ Y +CP I                                      ++ +  
Sbjct: 474 AALARGEQVYVVCPLIGQDSGERDAKAADGGSGGRRREADEEAYEYAAISIETDDDLEGD 533

Query: 499 NFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           +  +  +  + L     +   + ++HGRM   +K++VM  F++   ++L+ATTVIEVG+D
Sbjct: 534 DVAAAAKEASYLQGTVFADYRVELLHGRMPASEKQAVMQRFRDNETQVLVATTVIEVGVD 593

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +A+++I+E+A+ FGL+QLHQLRGRVGR  E ++ + L     S  + TRLS + +T+D
Sbjct: 594 VPNATVMIVEDADRFGLSQLHQLRGRVGR-GEKAAEVHLVSASKSDAALTRLSAMVDTDD 652

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           GF +A  DL  R+EG+ILG +Q G     +       +++E A  DA  IL +DP+L   
Sbjct: 653 GFELASYDLSLRREGDILGNRQHGASGLKLVNVMRDGAVIEAAHADAAAILEEDPNLELP 712

Query: 677 RGQSIRILLYLYQYNE 692
             +++   + +   N+
Sbjct: 713 AHRALAREVRIVYAND 728


>gi|187735706|ref|YP_001877818.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425758|gb|ACD05037.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 699

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 214/670 (31%), Positives = 346/670 (51%), Gaps = 23/670 (3%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++     A      DLLF  P  + DR    +   +S    V + G +          R
Sbjct: 31  RELAAMQAAGMASVRDLLFMLPRRYEDRRMFDRYDSLSSGVPVCLRGRVVDVGWKGWGGR 90

Query: 88  RP------YKILLNDGT--GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
                    + +L D    G+      +     +  +   G+++ V G++K    ++ MV
Sbjct: 91  GGKGRGRYVEAVLADEQSLGQTRFSCLWFSMPGVARMLCAGQEMIVYGRMKPYGKKLSMV 150

Query: 140 HPHYIF---HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQK 196
           HP +      + Q ++   I  VY    G++V   ++I+ E LSRL   PE    ++ + 
Sbjct: 151 HPDFEIIREGDEQSIHLNRIVPVYGGRMGIAVRRLREIVWETLSRLSPAPE---PEVYEF 207

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
                   A   +H P  A+  +         A +E LA Q+ +   R++  +  G+   
Sbjct: 208 VPDTPCKTALRDLHFPETAEARDRARRR---FALEECLAQQLNVAYRRRRADEVPGMRTA 264

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
               + + +  ++PF  T++Q+  +++I +DM     M R+LQGDVGSGKTLVAL AM  
Sbjct: 265 GSSHLVKDLADSLPFELTEAQKRCVREIYRDMKAPRSMNRLLQGDVGSGKTLVALCAMLL 324

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AVE G  AV+MAP  ILA+QHY   ++      + V ++T     A R++        Q 
Sbjct: 325 AVEHGYSAVMMAPTQILAEQHYLKFRQMLDKLDVPVSLVT-----ADRKEESHVSFGKQG 379

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I++GTHAL        ++ LV++DEQH+FGV QR KL  +   P VL+MTATPIPRTL 
Sbjct: 380 GIVVGTHALLYGKNVPERVGLVVIDEQHKFGVNQREKLIDREERPDVLVMTATPIPRTLT 439

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           LT  G++D+S +   P GR  + T I       +V+  ++  L EG++ Y + P I+ + 
Sbjct: 440 LTFYGELDVSILDGVPRGRGAVVTAIRTEKDKGKVLAFVRNQLEEGRQIYVVSPLIDGED 499

Query: 497 ESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
               ++V + ++          + ++HGRMS  +KE+VM  F++    +L++TTV+EVG+
Sbjct: 500 SRKGKAVTKEWDEWKALLPHVDVGLLHGRMSSEEKEAVMKDFRSNRISVLVSTTVVEVGV 559

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A+++II NAE FGL+QLHQLRGR+GRG   S CIL+         + +L +++ T 
Sbjct: 560 DVPNATVMIINNAESFGLSQLHQLRGRIGRGSHKSYCILMTDARPEDEQWEKLRIVETTA 619

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           +GF +AE+DL+ R  G++LG  QSG+      +  L   L+   R+ A+ IL +DP+L S
Sbjct: 620 NGFDLAEQDLRLRGPGDVLGTSQSGLKGVRFEEWLLDARLIHRGRQLAEAILAEDPNLES 679

Query: 676 VRGQSIRILL 685
            + + +R LL
Sbjct: 680 AKYRPLRFLL 689


>gi|315445121|ref|YP_004078000.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. Spyr1]
 gi|315263424|gb|ADU00166.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. Spyr1]
          Length = 753

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 216/729 (29%), Positives = 355/729 (48%), Gaps = 87/729 (11%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID----RHYRPKISEISEERIVTITG 74
           +G K +  L + +           DL+ Y P  + D    R     + ++ E   VT   
Sbjct: 12  IGAKAARPLEEHL-----GLHTVGDLVRYFPRKYSDAMTVRGEGEDL-DLEEGEHVTFVD 65

Query: 75  YISQHSSFQLQK---RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            I++    +++    R    + L D   ++T  FF    + LK    EG K+ ++G++  
Sbjct: 66  VIARAELKRVRNQPSREFLVVTLRDRRPKVTATFFN--PKWLKKTLVEGTKVMLSGEVGY 123

Query: 132 LKNRIIMVHPHYIFHNSQDVNF-------------------------PLIEAVYSLPTGL 166
            +  + + HP ++  +S                                   +Y+  + +
Sbjct: 124 FRGTMQLTHPAFMVLDSASGKTVGTKSLTSIASTSGATGDDLLAEFEKNYFPIYAATSKV 183

Query: 167 SVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226
                   + +AL+ L  +PE +    +++    S  EA   +H    A+D    + A E
Sbjct: 184 QTWDIYACVRQALAVLDPVPETLPDCFVREHDLMSEDEALRAVHLSENAED---RARAIE 240

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDIL 285
           RL +DE    Q  L++ R       G P    G      +   +PF  T  Q+  +  I 
Sbjct: 241 RLTFDEAAGLQWGLVVRRNSELGASGPPAPRRGGGLVDAMTAQLPFELTAGQQEVLAVIS 300

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY- 344
           +++     M R+LQG+VGSGKT+V+L+AM   ++AG Q  ++AP  +LA QH   I+   
Sbjct: 301 EELGAARPMNRMLQGEVGSGKTVVSLLAMLQMIDAGYQCALLAPTEVLAAQHASSIRSML 360

Query: 345 ----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
                            V ++TG+M  A +R A   +A G A I+IGTHAL  DS+++  
Sbjct: 361 GALAGAGELGGAEQATRVSLLTGSMSAAQKRDARREVASGVAGIVIGTHALLSDSVEFDN 420

Query: 395 LILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           L +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E 
Sbjct: 421 LGMVVVDEQHRFGVEQRDRLRAKAPAGLTPHLLVMTATPIPRTVALTIYGDLETSTLREL 480

Query: 452 PAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV--- 504
           P GR+PI T  I I      +D    R+   ++ G++AY +  +I+E   ++ ++     
Sbjct: 481 PRGRRPITTNTIFIRDKPAWLDRAWTRIAEEVAAGRQAYVVASRIDENDTADGKADGKAK 540

Query: 505 -------------------ERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCK 543
                              +    L     S +   ++HGR+S  +K++VM +F+ G   
Sbjct: 541 KAKKTSESDQQGPPPVTVVDLLARLQRGPLSGVRLGLMHGRLSGDEKDAVMAAFRAGDID 600

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ TTVIEVG+DV +A+++++ +A+ FG++QLHQLRGR+GRGE  S C+L  + P S  
Sbjct: 601 VLVCTTVIEVGVDVPNATVMVVMDADRFGISQLHQLRGRIGRGEHPSLCLLATNLPESSK 660

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKD 662
           +  RL+ +  T+DGF +AE DL++R EG++LG+ QSG P          H  ++  AR+ 
Sbjct: 661 AGQRLTAVAATQDGFELAELDLRERSEGDVLGLFQSGRPVTLRFLSLADHVEIILSAREL 720

Query: 663 AKHILTQDP 671
            + +   DP
Sbjct: 721 CETVYASDP 729


>gi|227504426|ref|ZP_03934475.1| possible DNA helicase RecG [Corynebacterium striatum ATCC 6940]
 gi|227199074|gb|EEI79122.1| possible DNA helicase RecG [Corynebacterium striatum ATCC 6940]
          Length = 704

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 220/691 (31%), Positives = 351/691 (50%), Gaps = 68/691 (9%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLN 95
              T    LL ++P  +I  +    +   +E   VT+TG + +    Q    + + + L+
Sbjct: 26  FGYTTCGQLLSHYPRDYIRHNKEVGLGGANEGDYVTVTGQVLRLQ--QRNTGKAFLLTLS 83

Query: 96  DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPL 155
              G IT  FF      L  V  +G ++ ++GK+K  + +  + HP ++  ++   +  L
Sbjct: 84  MDNG-ITATFFN--AHYLTRVLRQGMRLMLSGKLKFFRGQPQLQHPDFVIIDAGGQSDAL 140

Query: 156 IE----------------------------------AVYSLPTGLSVDLFKKIIVEALSR 181
            +                                   VY     ++       I   L+ 
Sbjct: 141 YDVDDSASGPKLKATGSLRNLSQFGQLEQLLEQEWIPVYPASGKVTSWYIMGAIHMVLAN 200

Query: 182 LPVLPEWIEKDLLQKKSFP-SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            P +PE ++           S+ +A   IH P  A          +RL Y+E L+  I +
Sbjct: 201 TPPIPEPLD------YRMMVSLDQAVREIHQPTAAGPERAI----QRLKYNEALSIGIVM 250

Query: 241 LLMRKQFKKEIGIPINVEGKIAQK-ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            L ++  +    + +    +  +  +L N+PF  T  Q   I +I  D+S    M+R+LQ
Sbjct: 251 ALRQRDSQARTAVAMPAILEGYRDELLANLPFELTAGQRQVIGEIDADLSGTLPMMRLLQ 310

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           G+VGSGKT+VA  AM  AV+AG QA ++AP  +LA QH   I   +    + V ++TG+M
Sbjct: 311 GEVGSGKTMVATCAMLQAVDAGKQAALLAPTEVLAAQHAASISA-SVPAGVTVTLLTGSM 369

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A +R+AL  I  G+A I+IGTHA+ QD+++++ L LV+VDEQHRFGV+QR  L  K  
Sbjct: 370 RTAQKRQALLDIVSGEADIVIGTHAIIQDTVEFFDLGLVVVDEQHRFGVEQRDSLRNKTR 429

Query: 420 A---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI---NRIDEVIE 473
               PH+L+MTATPIPRT+ +T  GD+ +S + E P GRKPI++ ++P      +   + 
Sbjct: 430 EGISPHLLVMTATPIPRTIAMTVFGDLAVSTLKELPGGRKPIQSNVVPEWAPAWVQRALA 489

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKE 531
           R++  ++ G +AY +CP+IE         V+E    L         + I+HGRM   DKE
Sbjct: 490 RIREEVAAGHQAYIVCPRIE-----GEGGVLEVAEQLESGPLQRLTVDILHGRM--ADKE 542

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            VM+ F  G   +L++TTVIEVG+DV +A++++I  +EHFG++QLHQLRGRVGRG   S 
Sbjct: 543 EVMNRFSRGETDVLVSTTVIEVGVDVPNATVMLIRESEHFGVSQLHQLRGRVGRGGNASI 602

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM-PKFLIAQPE 650
           C+       +  ++ R+  + +T  GF +AE DLKQR EG+ILG  QSG      +    
Sbjct: 603 CLFHTTAAENTPTFKRIMQIADTTSGFELAELDLKQRHEGDILGTVQSGTQRSLKLLDLA 662

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
               ++E    DA  ++ ++P L     +++
Sbjct: 663 QDRDIVERTHDDAFALVQRNPQLAHELTKNL 693


>gi|237785785|ref|YP_002906490.1| ATP-dependent DNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758697|gb|ACR17947.1| ATP-dependent DNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 760

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 226/762 (29%), Positives = 361/762 (47%), Gaps = 108/762 (14%)

Query: 1   MRPSFLN-PLFAPL-STFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYR 58
           MRP     PL  PL  +           L+          +   +L+ + P  +++    
Sbjct: 1   MRPMMGWEPLVVPLPDSLP---DSTRSHLA------AVGVSTVAELVEWFPRRYVEPGST 51

Query: 59  PKISEISEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRKTEMLKNVF 117
             +  +     VT  G I + +    + ++R Y +++ DGT  I   FF           
Sbjct: 52  SDMGSVDVGTTVTFVGEILRGNKITTRTRKRLYTVVITDGTQTINATFFNAFAP--ARDL 109

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV-------------------------- 151
             G +    G + + +  + + HP Y   +                              
Sbjct: 110 VVGTRAIFVGTVSEYRGALQLAHPAYKVIDFAQEWTLDTQPADEQPKRSSSRNIIDRDTA 169

Query: 152 ----NFPLIEAVYSL----------PTGLS----------------------------VD 169
                 PL+  +Y L            G +                              
Sbjct: 170 ALVTKLPLL-PIYPLKSESSRSASATDGDTGSSKTGKQSTKRPAKRSKPGSKRPVRVDSW 228

Query: 170 LFKKIIVEALSRLPVLPEWIEK-DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
                I   L+    +P+ + +   +Q K  PS+  A   +H P    D    + AR+RL
Sbjct: 229 TALDAITTVLTHSDPIPDPLPRVPTVQGKLLPSLDHAIRAMHMPSSWAD---QAMARKRL 285

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           A++E L  Q+ L   R              E     ++L  +PF  T  Q +  ++I  D
Sbjct: 286 AFNEALGLQLILASRRHAAADRRAPQCAPREDGYRAELLAGLPFDLTDQQRAVTEEIGDD 345

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           ++    M R+LQGDVGSGKT+VALIAM  AV+AG QA ++AP  +LA QH   +     N
Sbjct: 346 IAATRPMCRLLQGDVGSGKTIVALIAMLQAVDAGCQAALLAPTEVLAAQHAHSLMTMMAN 405

Query: 348 TQI--IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
             +   + ++TG+M  + R++ L  +  G+  I++GTHAL  D+++++ L LV+VDEQHR
Sbjct: 406 AGVAATIRLVTGSMSTSSRQETLLSLMTGETDIVVGTHALLSDNVEFFNLGLVVVDEQHR 465

Query: 406 FGVQQRLKLTQKATA-------PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           FGV+QR +L  +          PH L+MTATPIPRT+ +T+ GD+++S ITE P GRKPI
Sbjct: 466 FGVEQRDRLRGRGRDTEDGPLTPHQLVMTATPIPRTVAMTTFGDLNVSTITELPGGRKPI 525

Query: 459 KTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH--EH 513
           ++ ++P  +   +D   +R++  +  G++AY +CP+I+     N     + +  L     
Sbjct: 526 QSSVVPEWKKGWLDRAYQRIREEVESGRQAYIVCPRIQGDGGVN-----DMYEKLTVGPL 580

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               + ++HG++ + DKE +M  F  G C +LI+TTVIEVG+DV +A++++I  AE+FG+
Sbjct: 581 HGLRVGMLHGQLPNPDKERIMGKFSRGDCDVLISTTVIEVGVDVPNATLMLIREAENFGI 640

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           +QLHQLRGR+GRG   S C+     P   +SY RL  +  T DGF +AE DL  R EG++
Sbjct: 641 SQLHQLRGRIGRGSHASWCLFHTAQPEDSDSYRRLQGVAATTDGFALAELDLATRSEGDL 700

Query: 634 LGIKQSGMPKFLIAQPELHDS-LLEIARKDAKHILTQDPDLT 674
           +G  QSG    +     +HD  L+E A+ +A+HI+  DP L 
Sbjct: 701 VGADQSGRSTHIRLLDVVHDEPLIEAAKTEAEHIVQTDPGLA 742


>gi|184200687|ref|YP_001854894.1| ATP-dependent DNA helicase RecG [Kocuria rhizophila DC2201]
 gi|183580917|dbj|BAG29388.1| ATP-dependent DNA helicase RecG [Kocuria rhizophila DC2201]
          Length = 753

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 219/747 (29%), Positives = 349/747 (46%), Gaps = 65/747 (8%)

Query: 3   PSFLNPLFAPLST-FRGVGKK-YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           P+F   L  PL+    G   +     L+K     +   T    LL + P  +I R     
Sbjct: 13  PAFAGLLDQPLTRWIPGTSPRSTVALLAK-----DLGITTVGQLLDHAPRRYIHRGRIQA 67

Query: 61  ISEISEERIVTITGYISQHSSFQLQ---KRRPYKILLNDGTG-EITLLFFYRKTEMLKNV 116
           ++E+      +    +   S+ +++   +R    +++ D +G ++ + FF   +   +  
Sbjct: 68  LTELVAGERTSFVARVESSSTRRMRSDPRRSLTDVVVADDSGAQLKITFFNAYSA--QKD 125

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE--------AVYSLPTGLSV 168
              G     TGK +  +  + M    Y   ++ D                VY     L+ 
Sbjct: 126 LPVGSLALFTGKPEFYRGELSMTGADYAPVDTPDAVAGSTSESGELLPIPVYPEAGKLTT 185

Query: 169 DLFKKIIVEAL--SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226
               K + + L    L  L + +   L + +  P +  A+  +H P   + +E     + 
Sbjct: 186 PRIGKAVQQLLLTVDLDGLEDPLSPQLREAEDLPPLGRAYRDLHLPETVEAYERA---QR 242

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDIL 285
           R  + E    Q  L+  R +       P       +      ++PF  T  Q      I 
Sbjct: 243 RFRFQEAFVLQTELVRRRAEHASHPADPRPPCADGVLASFDASLPFELTPGQREVGVQIS 302

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            +++    M R+LQGDVGSGKT+VAL AM   V+ GGQA ++AP  +LA QHYE I    
Sbjct: 303 SELAGTAPMNRLLQGDVGSGKTVVALRAMLQVVDNGGQAAMLAPTEVLATQHYEKITSAL 362

Query: 346 QNTQII-----------VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
                            V ++TG+M    RRKAL  IA G + I++GTHAL Q+++Q+  
Sbjct: 363 GPLAEPGVLGGDPRATGVTLLTGSMSVPARRKALLDIASGASGIVVGTHALIQETVQFAD 422

Query: 395 LILVIVDEQHRFGVQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           L L +VDEQHRFGV+QR  L  +  +APH L+MTATPIPRT+ +T  GD+D+S + E P 
Sbjct: 423 LGLAVVDEQHRFGVEQRDALRGKAGSAPHTLVMTATPIPRTVAMTVFGDLDVSTLRELPG 482

Query: 454 GRKPIKTVIIPI-----NRIDEVIERLKVVLSEGKKAYWICPQI---------------- 492
           GR+PI T ++ +     +    V       ++ G++ Y + P+I                
Sbjct: 483 GRRPIATHVVGLAEHGPSWERRVWTLAAEHVAAGRQVYVVAPKIGDDAALPPFTSLCASL 542

Query: 493 ----EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
               EE + +    + E   +  E  ++  A++HGR     K   M +F  G   +L++T
Sbjct: 543 EAQPEEPEPATVTWLTELVAAQPELRSAGTAVLHGRQDAGTKAETMAAFDAGEIDVLVST 602

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TV+EVG+DV +A+++++ + E FG++QLHQLRGR+GR E  S+C+L+        +  RL
Sbjct: 603 TVVEVGVDVPNATLMVVVDPERFGISQLHQLRGRIGRSEHASTCLLVTRVASEHPARARL 662

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHIL 667
             +  T DGF +AE DLK RKEG+ILG  QSG             ++L+  AR  A+ ++
Sbjct: 663 DAVAATTDGFELAEADLKLRKEGDILGASQSGGRSGLRWVGALRDEALVARARAAAEAVV 722

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAF 694
            +DP LT        I   L +  +AF
Sbjct: 723 REDPQLTDHPVLRESIGRVLDEDRQAF 749


>gi|256824929|ref|YP_003148889.1| RecG-like helicase [Kytococcus sedentarius DSM 20547]
 gi|256688322|gb|ACV06124.1| RecG-like helicase [Kytococcus sedentarius DSM 20547]
          Length = 741

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 210/721 (29%), Positives = 350/721 (48%), Gaps = 76/721 (10%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           +G K +  L K             DL+ + P+ ++D      ++++   +   + G +  
Sbjct: 12  IGSKEAKALEK-----ARGLRTVGDLVQFVPTRYLDPDRPEAMADLVVGQSAVVVGEVVS 66

Query: 79  HSSFQLQ---KRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
                L+   +R+     + DG G  + + FF   T    +    G ++   G + + K 
Sbjct: 67  AQQLPLRNQPRRKRLVASVQDGAGSRLEVTFF--STYGHADRLVPGARVMFIGTVGEFKR 124

Query: 135 RIIMVHPHYIF-------HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
            + M HP Y+          +       +  +Y    G++        V AL  L   P+
Sbjct: 125 TLQMTHPDYVVLTGRGEVAGAAAGPGEGLIGLYREVKGMTSLQVNTAAVLALHALDEAPD 184

Query: 188 WIEKDL----LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
            +   +    +      ++ EA++ +H P    D+   +  R RL   E    Q+ L  +
Sbjct: 185 VVPPGVSVHGVTGHDLTAL-EAWSALHRP---ADWSEVARGRNRLRLAEAFELQVVLARL 240

Query: 244 RKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           R + + +   P    EG +A +    +PF+ T +QE   ++I  ++ + + M R+LQGDV
Sbjct: 241 RARHEADPATPRPRAEGGVAGRFDAALPFALTGAQERVGREIAAELERTHPMHRLLQGDV 300

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT--------QIIVEI 354
           GSGKT+VAL AM  AV++GGQA ++AP  ILA QH+  + +   +          + + +
Sbjct: 301 GSGKTMVALRAMLQAVDSGGQAALLAPTEILATQHHRGLVRTLGDLATAGRLAGGVEIRL 360

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+M QA R+K L     G+  I++GTHAL QD++ +  L LV++DEQHRFGV+QR  L
Sbjct: 361 LTGSMTQAQRQKVLLDTLTGEVDILVGTHALLQDTVGFADLALVVIDEQHRFGVEQRDAL 420

Query: 415 TQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP---INRIDE 470
             KA   PH+L+MTATPIPRT+ +T  GD+D+S + E PAGR+P+ T ++P      ++ 
Sbjct: 421 RAKADPPPHLLVMTATPIPRTVAMTVFGDMDVSVLDELPAGRQPVTTHVVPAGNATWVER 480

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE------------------------- 505
             ER+   ++ G++A+ +  +I+   +                                 
Sbjct: 481 AWERIAEEVAAGRQAFVVASRIDAADDPEDAPGGGAAGSQSGSDGLLVDLPDPAADEEDR 540

Query: 506 -----------RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                                  + ++HGRM    K+ VM +F  G   +L+ATTV+EVG
Sbjct: 541 PAAVGVEDLVVTAREHLAGRGIRVEMVHGRMQTETKDGVMAAFAAGEVDVLVATTVVEVG 600

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +AS++++ +A+ FG+AQLHQLRGR+GRG     C+L+ H         RL  +  T
Sbjct: 601 VDVPNASVMLVVDADRFGIAQLHQLRGRIGRGAHPGLCLLVTHVEAGPT-RERLDRVAAT 659

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            DGF +A  DL+ R+EG++LG  QSG       +      L++ AR+ A+  +  DPDL+
Sbjct: 660 TDGFELARADLEMRREGDVLGAAQSGSSGLDFVRVLQDAELIDRAREAARAYVRADPDLS 719

Query: 675 S 675
            
Sbjct: 720 G 720


>gi|218281658|ref|ZP_03488059.1| hypothetical protein EUBIFOR_00626 [Eubacterium biforme DSM 3989]
 gi|218217265|gb|EEC90803.1| hypothetical protein EUBIFOR_00626 [Eubacterium biforme DSM 3989]
          Length = 614

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 207/640 (32%), Positives = 329/640 (51%), Gaps = 29/640 (4%)

Query: 62  SEISEERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           +  +E+  V   G I   +      + R   K  +     E+ +  F R      + F  
Sbjct: 1   ASWNEKENVVFQGLICSAARVIRLSKNRSMTKFKVMSWNEELNITLFNRPWP---SQFGF 57

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G+ IT+ G+  +  N ++    ++   + Q      +  VY L  GL     + I+ EAL
Sbjct: 58  GKTITIYGQY-QGNNNVLASTYNFKPLDQQLG----LHPVYPLIEGLKQSDIQAIMKEAL 112

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             + +LP+ + +  + K     I+ A+  IH P   K       A   L Y+E L  Q  
Sbjct: 113 KHVDILPQRVPQRYVDKYKLLDISTAYKWIHFPENEK---QLHAAIRTLKYEEFLCFQCV 169

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +  M ++ + +     +V     +  + N+PF  TK Q S+I DIL D+   N M R++Q
Sbjct: 170 MQSMHEKKEIKTKKVFSVST--VKNWISNLPFELTKDQLSSIDDILYDLKSTNVMFRLVQ 227

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT+VA I+M A   AG Q+ ++AP  ILA+QH + + K      +   +   ++
Sbjct: 228 GDVGCGKTIVAQISMYANQLAGYQSALLAPTEILARQHVKNMHK----LGLEATLYVSSL 283

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ LE++ +G+   ++GTHALFQ+++ ++KL LVI DEQ RFGV+QR  L +K  
Sbjct: 284 TAKEKKEILEKLENGKIFNVVGTHALFQENVVFHKLGLVIADEQQRFGVKQRRSLLEKGK 343

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
               L+M+ATPIPRT      GD+DIS I   P GRK + T       +   ++ +   +
Sbjct: 344 CVDFLMMSATPIPRTYAHFLYGDMDISSIHTMPIGRKSVVTKYFKTASMAPCLKDVLNFI 403

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFK 538
            EG++ Y +CP IEE  E   R+V E +  + +      I ++HG+M+  +KE  M  F 
Sbjct: 404 KEGRQCYVVCPAIEENDEYKMRNVFEIYEGMTKTLKDVRIGLLHGKMTSQEKEETMAKFS 463

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                +L++TTVIEVGIDV +AS+++I +A  FGL+ LHQLRGRV R ++   C LL   
Sbjct: 464 KHEFDILVSTTVIEVGIDVANASVMVIYDAHRFGLSTLHQLRGRVARDKKQGYCFLLSSS 523

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
                +  RL  ++  +DGF ++  DL  R  G+ILGI+QSGMP  +    E   +++E+
Sbjct: 524 N-DPQAIERLKKMEELKDGFEVSNYDLHMRGPGDILGIRQSGMPCLVFGDFEKDQAMMEM 582

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             +DAK I+    D        + +LLY+    E  Q+  
Sbjct: 583 CIQDAKEIIQDQVD--------VDLLLYISNAIENAQYFD 614


>gi|325526988|gb|EGD04435.1| ATP-dependent DNA helicase RecG [Burkholderia sp. TJI49]
          Length = 564

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 224/562 (39%), Positives = 328/562 (58%), Gaps = 26/562 (4%)

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQKKSFPSIAEAFNIIH 210
           ++  VY    G+S    +K I  AL R P LPE +  ++    L+    PS+A+A  I+H
Sbjct: 6   VLTPVYPSTAGVSQAYLRKAIENALERTP-LPELLPPEIERAYLKPLDVPSLADAVRILH 64

Query: 211 NPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFK-----KEIGIPINVEGKI 261
           +PR   D     + + PA  R+ ++ELLA Q++L    ++ +            +    +
Sbjct: 65  HPRVDSDEAALMDGSHPAWTRIKFEELLAQQLSLKRAHEERRTRAAPAMPRRAASDADAL 124

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
             ++   +PF  T +Q   + +I  D++  + M R+LQGDVGSGKT+VA +A A A++AG
Sbjct: 125 TTRLYAALPFRLTGAQSRVVDEIAHDLTLAHPMQRLLQGDVGSGKTVVAALAAAQAIDAG 184

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A ++IG
Sbjct: 185 YQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAAIEAAALGTAQLVIG 244

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIP 432
           THA+ QDS+++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIP
Sbjct: 245 THAIIQDSVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAQGFQPHQLMMSATPIP 304

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL +T   D+++S I E P GR P+ T ++   R DEVI R++     G++ YW+CP I
Sbjct: 305 RTLAMTYYADLEVSTIDELPPGRTPVLTRLVGDARRDEVIARVREAALTGRQVYWVCPLI 364

Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           EE +    ++ VE + +L        + ++HGR+S  DK +VMD+F     +LL+ATTVI
Sbjct: 365 EESETLQLQTAVETYETLAAALPELKVGLVHGRLSPADKAAVMDAFTRNEVQLLVATTVI 424

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           EVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL  +
Sbjct: 425 EVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYTGPLSIAGRERLKTM 484

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           + T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR+ A  ++   P
Sbjct: 485 RETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIEPAREAAARLIAGYP 544

Query: 672 DLTSVRGQSIRILLYLYQYNEA 693
           ++ +      R L    QY +A
Sbjct: 545 EVVTQ--HLARWLGAREQYLKA 564


>gi|311740524|ref|ZP_07714351.1| DNA helicase RecG [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304044|gb|EFQ80120.1| DNA helicase RecG [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 710

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 228/711 (32%), Positives = 373/711 (52%), Gaps = 77/711 (10%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
            K +  ++K +      E     LL ++P  +I  +    + + +E  IVT+TG I+  +
Sbjct: 16  AKDAAKITKALGYETCGE-----LLAHYPRDYIRHNKDVGLGDAAEGDIVTVTGTITGFT 70

Query: 81  SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
                K     + L+   G I   FF      +  + + G+++ ++GK+K  +N+  +  
Sbjct: 71  RHDSGKTTIINVQLD---GSIVATFFNAN--YVMRMLYRGQRVMMSGKLKFFRNQPQLQQ 125

Query: 141 PHYIFHNS--------QDVNFPLIE--------------------------------AVY 160
           P ++  ++         D   P  E                                 VY
Sbjct: 126 PDFVEIDAFGRPDGELDDYRQPAAESGKKHRPKATGSLRNLSQFGRLDQLLLEREWIPVY 185

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
              + ++       I   LS+ P + E ++  ++      S+ +A   IH P +A     
Sbjct: 186 PATSKVTSWYIMGAIHYVLSKTPPIEEPLDYQMI-----ISLDKAVREIHEPGEA----G 236

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQES 279
              A +RL Y+E L+  + + L ++  +      +    G   +++L ++PF  T+ Q  
Sbjct: 237 PYRAIQRLKYNEALSIGLVMALRQRDAEARTASTMPATLGGYREELLSHLPFDLTEGQRR 296

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            I +I  D+++   M+R+LQG+VGSGKT+VA  AM  AV+AG QA ++AP  +LA QH  
Sbjct: 297 VISEIEDDLARPLPMMRLLQGEVGSGKTMVATCAMLQAVDAGTQAALLAPTEVLASQHAA 356

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            I   +    + V ++TG+M  A +R+AL  I  G A I+IGTHA+ QDS++++ L LV+
Sbjct: 357 SIG-TSVPEGVKVVLLTGSMRTADKRQALLDIVSGDADIVIGTHAIIQDSVEFFNLGLVV 415

Query: 400 VDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           VDEQHRFGV+QR  L  KA     PHVL+MTATPIPRT+ +T  GD+ +S +TE P GRK
Sbjct: 416 VDEQHRFGVEQRDSLRLKAREGLSPHVLVMTATPIPRTIAMTVFGDLAVSTLTELPGGRK 475

Query: 457 PIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           PI++ ++   R   +   +ER++  ++ G +AY +CP+IE K       V+E    L   
Sbjct: 476 PIQSAVVAEWRPTWVLRALERIREEVAHGHQAYIVCPRIEGKG-----GVLELAQQLENG 530

Query: 514 FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 +AI+HG+M +  K+ VM SF  G   +L++TTVIEVG+DV +A++++I  +EHF
Sbjct: 531 PFKGLRVAILHGKMPN--KDEVMTSFARGEIDILVSTTVIEVGVDVPNATVMLIRESEHF 588

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           G++QLHQLRGRVGRG   S C+L      +  S+ R++ +  T  GF +AE DL+QR+EG
Sbjct: 589 GVSQLHQLRGRVGRGGNASVCLLHTTAADNTPSFRRITQIAQTSSGFELAELDLRQRQEG 648

Query: 632 EILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           +ILG  QSG      +        ++E    DA+ ++ ++P+L     +++
Sbjct: 649 DILGTMQSGTHRTLRLLNLADDQDIVERTHTDARAMVMRNPELAEELTRNL 699


>gi|255324609|ref|ZP_05365726.1| ATP-dependent DNA helicase RecG [Corynebacterium tuberculostearicum
           SK141]
 gi|255298515|gb|EET77815.1| ATP-dependent DNA helicase RecG [Corynebacterium tuberculostearicum
           SK141]
          Length = 710

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 228/711 (32%), Positives = 372/711 (52%), Gaps = 77/711 (10%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
            K +  ++K +      E     LL ++P  +I  +    + + +E  IVT+TG I+  +
Sbjct: 16  AKDAAKITKALGYETCGE-----LLAHYPRDYIRHNKDVGLGDAAEGDIVTVTGTITGFT 70

Query: 81  SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
                K     + L+   G I   FF      +  +   G+++ ++GK+K  +N+  +  
Sbjct: 71  RHDSGKTTIINVQLD---GSIIATFFNAN--YVMRMLHRGQRVMMSGKLKFFRNQPQLQQ 125

Query: 141 PHYIFHNS--------QDVNFPLIE--------------------------------AVY 160
           P ++  ++         D   P  E                                 VY
Sbjct: 126 PDFVEIDAFGRPDGELDDYRQPAAESGKKHRPKATGSLRNLSQFGRLDQLLLEREWIPVY 185

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
              + ++       I   LS+ P + E ++  ++      S+ +A   IH P +A     
Sbjct: 186 PATSKVTSWYIMGAIHYVLSKTPPIEEPLDYQMI-----ISLDKAVREIHEPGEA----G 236

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQES 279
              A +RL Y+E L+  + + L ++  +      +    G   ++++ ++PF  T+ Q  
Sbjct: 237 PYRAIQRLKYNEALSIGLVMALRQRDAEARTASTMPATLGGYREELVSHLPFDLTEGQRR 296

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            I +I  D+++   M+R+LQG+VGSGKT+VA  AM  AV+AG QA ++AP  +LA QH  
Sbjct: 297 VISEIEDDLARPLPMMRLLQGEVGSGKTMVATCAMLQAVDAGTQAALLAPTEVLASQHAA 356

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            I   +    + V ++TG+M  A +R+AL  I  G A I+IGTHA+ QDS++++ L LV+
Sbjct: 357 SIG-TSVPEGVKVVLLTGSMRTADKRQALLDIVSGDADIVIGTHAIIQDSVEFFNLGLVV 415

Query: 400 VDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           VDEQHRFGV+QR  L  KA     PHVL+MTATPIPRT+ +T  GD+ +S +TE P GRK
Sbjct: 416 VDEQHRFGVEQRDSLRLKAREGLSPHVLVMTATPIPRTIAMTVFGDLAVSTLTELPGGRK 475

Query: 457 PIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           PI++ ++   R   +   +ER++  ++ G +AY +CP+IE K       V+E    L   
Sbjct: 476 PIQSAVVAEWRPTWVLRALERIREEVAHGHQAYIVCPRIEGKG-----GVLELAQQLENG 530

Query: 514 FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 IAI+HG+M +  K+ VM SF  G   +L++TTVIEVG+DV +A++++I  +EHF
Sbjct: 531 PFKGLRIAILHGKMPN--KDEVMTSFARGEIDILVSTTVIEVGVDVPNATVMLIRESEHF 588

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           G++QLHQLRGRVGRG   S C+L      +  S+ R++ +  T  GF +AE DL+QR+EG
Sbjct: 589 GVSQLHQLRGRVGRGGNASVCLLHTTAADNTPSFRRITQIAQTSSGFELAELDLRQRQEG 648

Query: 632 EILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           +ILG  QSG      +        ++E    DA+ ++ ++P+L     +++
Sbjct: 649 DILGTMQSGTHRTLRLLNLADDQDIVERTHTDARAMVLRNPELAEELTRNL 699


>gi|68171581|ref|ZP_00544954.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|67998991|gb|EAM85669.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Ehrlichia
           chaffeensis str. Sapulpa]
          Length = 528

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 232/531 (43%), Positives = 331/531 (62%), Gaps = 9/531 (1%)

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
            L  GL+     K++  ++  LP  PEWI++ LL+   + S  E+   IH+P      E 
Sbjct: 1   PLIRGLTSKRISKLVKLSVRLLPDFPEWIDEKLLRDNRWNSWKESLIKIHHPDT---LEA 57

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
               R RLAYDELL+ QI++ ++RK F  + G+ I  +      IL  +PF  T+ Q+  
Sbjct: 58  VHLHRARLAYDELLSHQISVKMVRK-FDYQQGVSIVSKQLYYNDILNKLPFKLTEGQKEV 116

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I  I +  + +NRM+++L GDVGSGKT+VAL A+   +E GGQ   MAP  ILA+QHY +
Sbjct: 117 ISQITKSQASENRMVKLLIGDVGSGKTVVALFAILNVIENGGQVAFMAPTEILAEQHYRW 176

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           I+    +  + VE++T  + +       +++  G+ +++IGTHALFQD + +  L L+I+
Sbjct: 177 IRAILSDISVDVELLTSKVRKKQ--NIKKKLQLGECNVVIGTHALFQDGVDFNNLNLIII 234

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQ RFGV QR++L  K+    VL MTATPIPRTL     GDID  ++ +KP  R PI+T
Sbjct: 235 DEQQRFGVLQRMRLINKSNMADVLFMTATPIPRTLEQVVYGDIDCLRLKDKPHNRLPIQT 294

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            I+ I R+ EVI +L++ L EG KAYWICP IE+ +  +  +  +RF +L E F   + +
Sbjct: 295 SIVNIERLFEVIAKLQLALQEGNKAYWICPYIEDSELLDIAAAEKRFFTLQEVFGKDVGL 354

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IH R+  I+K+ VM SF NG  KLL+ATTVIEVG+D+ DA+IIIIENAE FGL+QLHQLR
Sbjct: 355 IHSRLPKIEKDEVMMSFYNGNIKLLVATTVIEVGVDIPDATIIIIENAEQFGLSQLHQLR 414

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGR ++ S CILL+   LSK +Y +L +L+  +DGF IAE+DL  R  G++LGIKQSG
Sbjct: 415 GRVGRSDKSSFCILLHGNMLSKIAYKKLCILRKFQDGFYIAEQDLLLRGSGDVLGIKQSG 474

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           +  F  A       L+ IA + A  IL  +    +  G     LL+++ Y+
Sbjct: 475 LSNFKFADIYKDQGLISIAVEQAGAILDAN---KTELGDHFNQLLHMFGYD 522


>gi|88608747|ref|YP_506567.1| ATP-dependent DNA helicase RecG [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600916|gb|ABD46384.1| ATP-dependent DNA helicase RecG [Neorickettsia sennetsu str.
           Miyayama]
          Length = 675

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 228/634 (35%), Positives = 345/634 (54%), Gaps = 15/634 (2%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYI---SQHSSFQLQKRRPYKILLN 95
           +R +DLL + P  F++R     I+   E   VTI        +H     + +R +K    
Sbjct: 29  SRVVDLLLHKPRGFVNRCNFKAIANSVEGEFVTIEARYEGSKEHFHRSRRVKRLHKFFFK 88

Query: 96  DGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP 154
           D     + ++FF +    L+     G    + G   ++     M HP  I   S+     
Sbjct: 89  DKNEDSLEVIFFTK--TYLQRKLKVGEWYLING---RMGVSAQMFHPDKILKLSERDKLS 143

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
             E  Y L  G++   F  ++   L       EW+E+  ++K+   S  +A   +H+P  
Sbjct: 144 AFEPKYRLSDGITNYQFLSLVDSLLKSSKPPKEWLEQTSVRKRGLISWGKAIEQLHHPSS 203

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
             +FE      +RLAYDE+LA  +    +  Q   +   PI  +G+I   +   +PFS T
Sbjct: 204 EVEFEQAC---KRLAYDEILAMHLVNNSLHTQVLNQKKEPIKGDGRITALLRSRLPFSLT 260

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + QE  IK I     Q  RM+ +LQGDVGSGKTLV + AM  AVE G Q V+++P  +LA
Sbjct: 261 EGQEEVIKKIYALQGQDVRMVALLQGDVGSGKTLVVIFAMLNAVEVGKQVVLLSPTIVLA 320

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH+E ++K     ++   ++TG      R + L+ I  G A +I+ THA+    I ++ 
Sbjct: 321 KQHFEVLQKLL--PELKPVLLTGEKIACSREQFLQDIRSGDAKVIVATHAILAVGILFFD 378

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+++DEQHRFG  QR KL ++     ++L++ATPIPRT+     G I +  + EKP  
Sbjct: 379 LGLLVIDEQHRFGANQRTKLIRENPGADLVLVSATPIPRTIGQVLFGSITLLNLREKPKS 438

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  + T  +  ++I ++IER+KV+L +G K +WICP IEE +     SV ERF  L +HF
Sbjct: 439 RPVVTTSTVTKSKIAKLIERIKVILGKGSKVFWICPVIEESENLKVISVTERFRLLKKHF 498

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +  +HG +S    E  + +F+NG  K+L+ATTV+EVG+D+ D  +I+IE+A+HFGLA
Sbjct: 499 ADEVDCVHGVLSAQKMEEKLTAFRNGKTKILLATTVVEVGVDIPDVDVIVIEDADHFGLA 558

Query: 575 QLHQLRGRVGRGEEISSCILLYHP-PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           QLHQLRGRVGRG + S CILLY    +++N   RL +L+ + DGF IAEED K R  G+I
Sbjct: 559 QLHQLRGRVGRGNKKSFCILLYDSQKITENGKKRLKILRESSDGFFIAEEDFKLRGVGDI 618

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            G++QSG  KF         S  + A  +A+  +
Sbjct: 619 FGVRQSGFYKFKFLDRPFEHSFFDSASMEAQDAI 652


>gi|296119649|ref|ZP_06838207.1| ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967532|gb|EFG80799.1| ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM 20306]
          Length = 698

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 220/710 (30%), Positives = 364/710 (51%), Gaps = 69/710 (9%)

Query: 12  PLST-FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRH---YRPKISEISEE 67
           PLS    G   K +  L+K        +     LL + P  +I +          +  E 
Sbjct: 9   PLSEVLPG---KVAKALTKSFGYSTCGQL----LLNHFPRDYIRQGKNFRAFAERQAPEG 61

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
             +T++G ++  +   ++      + ++D     T +FF       + V + G ++  +G
Sbjct: 62  SFITVSGTVTHIAKRPIRNGFVLNVTVDDA---YTAVFFNG--VWQERVLYPGIRVLFSG 116

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIE-------------------------AVYSL 162
           K+K   N   + HP ++  ++      + +                          VY  
Sbjct: 117 KLKFFHNTAQLQHPEFLILDAPRGESAVSKRWGGTLKAIAQFVDVEELLRDREWLPVYPA 176

Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222
            + L        I   L  LP + + ++   L      +   A   IH PR     E   
Sbjct: 177 SSTLKTWTIMAAIHHVLKTLPPIEDPLDISDL------TFDMALRQIHEPRP----EGPQ 226

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESAI 281
            A +RL Y+E L   + + L R+  +      +       + ++L  +PF  T  Q+  +
Sbjct: 227 RAIDRLKYNEALGIGLVMALRRRDTRHWRAFALPPAPDGYRAEMLAKLPFELTGGQQRVL 286

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           KDI +D+S+   M R+LQG+VGSGKTLVA+ AM +AV+AG QA ++AP  +LA QH   I
Sbjct: 287 KDIDRDLSKAEPMSRLLQGEVGSGKTLVAVAAMLSAVDAGHQAALLAPTEVLAHQHARSI 346

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
                +  I + +++G+M  A +R+AL  I  GQA I++GTHA+ Q++++++ L +V+VD
Sbjct: 347 SAMLPD-DIRLTVLSGSMKVAEKRQALLDIVSGQADIVVGTHAIIQETVEFFSLGMVVVD 405

Query: 402 EQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           EQHRFGV+QR  L  KA   T PHVL+MTATPIPRT+ +T  GD+++S + E P GRKPI
Sbjct: 406 EQHRFGVEQRDSLRMKAPEGTFPHVLVMTATPIPRTIAMTVFGDLEVSSLHELPGGRKPI 465

Query: 459 KTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           ++ ++P  +   +    ER++  ++ G +AY +CP+IE +       V+E    L +   
Sbjct: 466 QSSVVPEAKPTWVTRAFERIREEVAAGHQAYIVCPRIEGEG-----GVLELAEELQDGPL 520

Query: 516 S--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           +   I ++HGRM   DK+  M +F  G   +L++TTVIEVG+DV +A++++I  +E+FG+
Sbjct: 521 AGLRIMVLHGRMD--DKDERMAAFARGDIDVLVSTTVIEVGVDVANATVMLIRESENFGV 578

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           +QLHQLRGRVGRG   S C+       +  S+ R++ +  T  GF + E D++ R+EG++
Sbjct: 579 SQLHQLRGRVGRGGNASLCLFHTLAAPNSESFERIAKIAATSSGFELTELDMEYRREGDV 638

Query: 634 LGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           LG +QSG      +        ++E A +DA  ++  +P+L       IR
Sbjct: 639 LGTRQSGRQRTLQLLDLSEDLLIIERAYEDAYQLVDDNPELAFHLTVGIR 688


>gi|167970005|ref|ZP_02552282.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis H37Ra]
          Length = 1293

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 344/701 (49%), Gaps = 67/701 (9%)

Query: 36   ANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYISQHSSFQLQK---RRPY 90
                   DLL ++P S+++   R  I +        +TI   I+   SF ++K   R+  
Sbjct: 580  FGMRTVDDLLRHYPRSYVEGAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNRKCL 639

Query: 91   KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150
            +I +  G  ++T  FF    + +     +  K+ ++G++   K  + + HP ++  +S D
Sbjct: 640  RITVGGGRNKVTATFFN--ADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSPD 697

Query: 151  VNFPLIE--------------------------AVYSLPTGLSVDLFKKIIVEALSRLPV 184
                                              +Y   T +      K + + L  L  
Sbjct: 698  GKNHGTRSLKSIADASKAISGELVVEEFERRFFPIYPASTKVQSWDIFKCVRQVLDVLDR 757

Query: 185  LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
            + + +  +L  K       EA   I     A+       ARERL +DE +  Q AL+  R
Sbjct: 758  VDDPLPAELRAKHGLIPEDEALRAI---HLAESQSLRERARERLTFDEAVGLQWALVARR 814

Query: 245  KQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
                 E G     +    A ++LR +PF  T  Q   +  +   ++    + R+LQG+VG
Sbjct: 815  HGELSESGPSAAWKSNGLAAELLRRLPFELTAGQREVLDVLSDGLAANRPLNRLLQGEVG 874

Query: 304  SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-----------IV 352
            SGKT+VA++AM   V+AG Q  ++AP  +LA QH   I+       +            V
Sbjct: 875  SGKTIVAVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRV 934

Query: 353  EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             ++TG+M    +++    IA GQ  I+IGTHAL Q+++ ++ L +V+VDEQHRFGV+QR 
Sbjct: 935  ALLTGSMTAGQKKQVRAEIASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRD 994

Query: 413  KLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467
            +L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E P GR+PI T +I +    
Sbjct: 995  QLRAKAPAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNVIFVKDKP 1054

Query: 468  --IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR---SVVERFNSLHEHFTS------ 516
              +D    R+    + G++AY + P+I+E  +++ +           L     S      
Sbjct: 1055 AWLDRAWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGVRPSATAEGLFSRLRSAELAEL 1114

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             +A++HGR+S  DK++ M +F+ G   +L+ TTVIEVG+DV +A+++++ +A+ FG++QL
Sbjct: 1115 RLALMHGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQL 1174

Query: 577  HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
            HQLRGR+GRGE  S C+L    P    +  RL  +  T DGF +A+ DLK+RKEG++LG 
Sbjct: 1175 HQLRGRIGRGEHPSVCLLASWVPPDTPAGQRLRAVAGTMDGFALADLDLKERKEGDVLGR 1234

Query: 637  KQSGM-PKFLIAQPELHDSLLEIARKDAKHILTQ--DPDLT 674
             QSG      +     H+  +  AR           DP L 
Sbjct: 1235 NQSGKAITLRLLSLAEHEEYIVAARDFCIEAYKNPTDPALA 1275


>gi|225022638|ref|ZP_03711830.1| hypothetical protein CORMATOL_02681 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944546|gb|EEG25755.1| hypothetical protein CORMATOL_02681 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 711

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 226/702 (32%), Positives = 341/702 (48%), Gaps = 66/702 (9%)

Query: 22  KYSLFL-SKIINC--GNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           K +  L  K           T   +LL ++P ++   +  P +++ ++  IVT  G I  
Sbjct: 9   KLTDLLPEKEAKTIRTTLGYTTAKELLTHYPRTYATHNDTPFLNQANDGDIVTCIGEIIH 68

Query: 79  HSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTE---MLKNVFFEGRKITVTGKIKKLKN 134
            ++   +K      +    T E I   FF+ K       +     G     TGKIK  + 
Sbjct: 69  TATIHTKKTTTIYTITIQTTNELIKATFFHAKPHQAAWCERTLTRGTTAIFTGKIKTYRG 128

Query: 135 RIIMVHPHYIFHNSQDV-----------------------NFPLIEAVYSLPTGLSVDLF 171
              + HP ++  N+                          + P I  +Y     ++    
Sbjct: 129 APQLQHPDFLLLNTPHPTSTGALKQLTAYGNDTDISNFLTSLPAI-PIYPARQRITTWRI 187

Query: 172 KKIIVEALSRLPVLPEWI----EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER 227
              I   L     +P+ +      D       P+   A   IH      D       R R
Sbjct: 188 LGAIHHILDHTNPIPDPLGPFTPPD------LPTFDRALRGIHQ-----DGTNAYTYRHR 236

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEG----KIAQKILRNIPFSPTKSQESAIKD 283
           LAY+E LA  + + + R         P++          + ++ N+P++ T  Q++ I  
Sbjct: 237 LAYNEALALALVMEIRRHDTTTRHATPLSPHPTGAPHHRETLINNLPYTLTTGQQTIINT 296

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           I  D++  + M R+LQG+VGSGKT++ALIAM  AVE G Q  ++AP  +LA QH   + +
Sbjct: 297 IATDLNSPHPMQRLLQGEVGSGKTIIALIAMLQAVENGKQCALLAPTSVLAHQHGHSLTE 356

Query: 344 YTQNTQII--VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
              N  I   +  +TG+M    +  AL  I  G A+IIIGTHAL QD++++Y L LVI+D
Sbjct: 357 LLTNAGINLTITTLTGDMTPTQKNHALLAIISGDANIIIGTHALIQDTVEFYDLGLVIID 416

Query: 402 EQHRFGVQQRLKLT---QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           EQHRFGV+QR  L    +  T PH+L+MTATPIPRT+ +T  GD++ S + E P GR+PI
Sbjct: 417 EQHRFGVEQRDSLRTKGKNHTTPHLLVMTATPIPRTIAMTFFGDLNHSTLNELPGGRRPI 476

Query: 459 KTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE--H 513
           K+ ++P           E ++  + +G + Y +CP+I     +    V+E    L E   
Sbjct: 477 KSYVVPEYLPKYTTRAYEVMREHIHQGHQIYIVCPRI-----NGPGGVLETHQHLSETEF 531

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               I ++HG++ D DK++ M  F NG   +LIATTVIEVGIDV +A+II+I  +E+ G+
Sbjct: 532 KNYRIGLLHGQLKDADKDTTMRQFANGDLDILIATTVIEVGIDVPNATIIMIRESENLGV 591

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           +QLHQLRGRVGRG   S C   +       +  R+  +  T DGF +AE DL QR EG++
Sbjct: 592 SQLHQLRGRVGRGGYDSICFFHHTAERGTPADKRIWQMAATTDGFQVAEIDLIQRHEGDV 651

Query: 634 LGIKQSGM-PKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           LG  QSG   K           L+  A +DAK+I+  + DL 
Sbjct: 652 LGTSQSGTNRKIAFLNLARDIGLINRANRDAKNIVAHNLDLA 693


>gi|282854612|ref|ZP_06263947.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           J139]
 gi|282582194|gb|EFB87576.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           J139]
 gi|314923870|gb|EFS87701.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL001PA1]
 gi|314966073|gb|EFT10172.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL082PA2]
 gi|314981845|gb|EFT25938.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL110PA3]
 gi|315090770|gb|EFT62746.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL110PA4]
 gi|315094922|gb|EFT66898.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL060PA1]
 gi|315104244|gb|EFT76220.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL050PA2]
 gi|327328049|gb|EGE69818.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes HL103PA1]
          Length = 749

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 204/718 (28%), Positives = 345/718 (48%), Gaps = 63/718 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  PL+    VG K +   S +      +     + L + P  ++       +S +  
Sbjct: 20  KELHRPLAE--AVGAKTAKAFSAL------HVGTVGEALGHLPRRYLTGTETTDLSHLVI 71

Query: 67  ERIVTITGYISQHSS--------FQLQKRRPYKILLNDGTGEITLLFFYRK--TEMLKNV 116
           +  V +   +              + + R+  +++L+DG   + + FF +       + +
Sbjct: 72  DTEVALVADVVGVEVHTNKTVTGRERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRI 131

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPLIEAVYS 161
           F         GK+ + +    +VHP ++  +               +  V    +  +Y 
Sbjct: 132 FSAHTHGIFVGKVGEFRGNPQLVHPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYP 191

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
             + L       +    L   P L + + + L Q+   PS+ EA++ IH+P    + +  
Sbjct: 192 QTSKLRTWEIASVESMLLESTPELEDTLPEWLRQEADLPSLWEAYHAIHHPHSVAEADRG 251

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
           +   ERL ++E +A Q  + + R+  ++      +  +G +       +PF+PT  Q+  
Sbjct: 252 T---ERLIWEEAIATQATMAVRRRSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEV 308

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            + I  D+S    M R+LQG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  
Sbjct: 309 SRAIDADLSADRPMHRLLQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRT 368

Query: 341 IKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I     +               V ++TG++  A  R AL  IA G A II+GTH+L    
Sbjct: 369 IINMLGDLASGGGLDAPEISTGVALLTGSVKAAGTRAALADIASGVAGIIVGTHSLLSGR 428

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           + Y  + LV+VDEQHRFGV+QR  LT      PH L++TATPIPRT+ +T  GD+++S +
Sbjct: 429 VIYNDIGLVVVDEQHRFGVEQRSVLTTGDGARPHELVLTATPIPRTVAMTVFGDLEVSSL 488

Query: 449 TEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
            E P GR  ++T ++ +    + +    +R++     G + + +CP+I      +    R
Sbjct: 489 RELPTGRADVQTTVVDLPAHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGR 548

Query: 502 SVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                   L     +       +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+
Sbjct: 549 PPAAAVEELAPQLATGPLAGLRVEALHSRLDSSEKDLVMDRFIKGELQVLISTTVIEVGV 608

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A++++I +A+ FG++QLHQLRGR+GRG     C+L+   P    +  RL  +  + 
Sbjct: 609 DVPNATMMVIMDADRFGVSQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASR 668

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPD 672
           DGF +AE DL QR EG +LG  Q+G      + +   H  ++  ++  A+  + + PD
Sbjct: 669 DGFELAELDLAQRHEGNVLGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726


>gi|221230362|ref|YP_002503778.1| ATP-dependent DNA helicase RecG [Mycobacterium leprae Br4923]
 gi|219933469|emb|CAR71766.1| ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
          Length = 743

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 210/743 (28%), Positives = 353/743 (47%), Gaps = 78/743 (10%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE-----ERIVTIT 73
           VG K +  L ++            DLL ++P S+        +    +        +TI 
Sbjct: 12  VGAKAADSLDEV-----FGIRTVDDLLRHYPRSY---TKGATVRGAQDERPEAGEHITIV 63

Query: 74  GYISQHSSFQLQK---RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
             I++  +  ++K   ++  ++ +  G  ++   FF      +     +  ++ ++G++ 
Sbjct: 64  DVITEAVTLPMKKDSKKKYLRLTVGSGRNKVIATFFNAG--YISKGLTKDTRVMLSGEVG 121

Query: 131 KLKNRIIMVHPHYIFHNSQDVN--------------------------FPLIEAVYSLPT 164
             +  + + HP ++  +S D                                  +Y   T
Sbjct: 122 FFRGVMQLTHPAFLILDSPDGRNRGSSSLRRIADASQAVSGEVLMSAFERRFFPIYPAST 181

Query: 165 GLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPA 224
            L        + + L  L  + + +  DL  K    S  EA   IH      D      A
Sbjct: 182 KLQSWDIYACVRQVLEVLDPVADPLPADLRAKHGLVSEDEALRAIHLAESESD---RRRA 238

Query: 225 RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESAIKD 283
           RERL +DE +  Q AL+  R     E G            +++R +PF  T+ Q      
Sbjct: 239 RERLTFDEAVGLQWALVTRRHGELSESGPSAPPRSDGLMAELMRRLPFELTEGQREVRDV 298

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           +   ++    + R+LQG+VGSGKT+VA++AM   ++AG Q V++AP  +LA QH   I+ 
Sbjct: 299 LSDGLAATRPLNRLLQGEVGSGKTIVAVLAMLQMIDAGYQCVLLAPTEVLAAQHLLSIRD 358

Query: 344 YTQNTQI-----------IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
                 +            V ++TG+M  A ++K    I  GQ  I+IGTHAL QD+I++
Sbjct: 359 VLGPLGMGCQLGGAENATQVALLTGSMTMAQKKKVRADIFSGQTGIVIGTHALLQDAIEF 418

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + L +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD+++S + 
Sbjct: 419 HNLGMVVVDEQHRFGVEQRDQLRTKARTGIMPHLLVMTATPIPRTVALTVYGDLEMSTLR 478

Query: 450 EKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESN----FR 501
           E P GR+PI + +I +      +D   +R+   ++ G++AY + P+I+E ++        
Sbjct: 479 ELPRGRQPITSNVIFVKDKPGWLDRAWQRILEEVAAGRQAYVVAPRIDETEDPQKGGQNS 538

Query: 502 SVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              E    L+    S       +A++HGR+S  +K++ M +F+ G   +L+ T VIEVG+
Sbjct: 539 RPSETAEGLYARLRSGELANVRLALMHGRLSADEKDAAMMAFRAGEIDVLVCTNVIEVGV 598

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A+I+++ +A+ FG++QLHQLRGR+GRG   S C+L         +  RL  +  T 
Sbjct: 599 DVPNATIMLVMDADRFGISQLHQLRGRIGRGTHPSLCLLASWVSPGSPAGRRLCAVAETM 658

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           DGF +A+ DLK+R+EG++LG  QSG      +     H   +E AR        + P L 
Sbjct: 659 DGFALADLDLKERREGDVLGRNQSGKAITLRMLSLAEHQVFIEAARDFCTRAY-EYPHLG 717

Query: 675 SVRGQSIRILLYLYQYNEAFQFI 697
                 +  L   +   +  +++
Sbjct: 718 LAPHPGLADLAARFIDTDRIEYL 740


>gi|305681976|ref|ZP_07404780.1| putative ATP-dependent DNA helicase RecG [Corynebacterium
           matruchotii ATCC 14266]
 gi|305658449|gb|EFM47952.1| putative ATP-dependent DNA helicase RecG [Corynebacterium
           matruchotii ATCC 14266]
          Length = 711

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 226/702 (32%), Positives = 341/702 (48%), Gaps = 66/702 (9%)

Query: 22  KYSLFL-SKIINC--GNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           K +  L  K           T   +LL ++P ++   +  P +++ ++  IVT  G I  
Sbjct: 9   KLTDLLPEKEAKTIRTTLGYTTAKELLTHYPRAYATHNDTPFLNQANDGDIVTCIGEIIH 68

Query: 79  HSSFQLQKRRPYKILLNDGTGE-ITLLFFYRKTE---MLKNVFFEGRKITVTGKIKKLKN 134
            ++   +K      +    T E I   FF+ K       +     G     TGKIK  + 
Sbjct: 69  TATIHTKKTTTIYTITIQTTNELIKATFFHAKPHQAAWCERTLTRGTTAIFTGKIKTYRG 128

Query: 135 RIIMVHPHYIFHNSQDV-----------------------NFPLIEAVYSLPTGLSVDLF 171
              + HP ++  N+                          + P I  +Y     ++    
Sbjct: 129 APQLQHPDFLLLNTPHPTSTGALKQLTAYGNDTDISNFLTSLPAI-PIYPARQRITTWRI 187

Query: 172 KKIIVEALSRLPVLPEWI----EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER 227
              I   L     +P+ +      D       P+   A   IH      D       R R
Sbjct: 188 LGAIHHILDHTNPIPDPLGPFTPPD------LPTFDRALRGIHQ-----DGTNAYTYRHR 236

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEG----KIAQKILRNIPFSPTKSQESAIKD 283
           LAY+E LA  + + + R         P++          + ++ N+P++ T  Q++ I  
Sbjct: 237 LAYNEALALALVMEIRRHDTTTRHATPLSPHPTGAPHHRETLINNLPYTLTTGQQTIINT 296

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           I  D++  + M R+LQG+VGSGKT++ALIAM  AVE G Q  ++AP  +LA QH   + +
Sbjct: 297 IATDLNSPHPMQRLLQGEVGSGKTIIALIAMLQAVENGKQCALLAPTSVLAHQHGHSLTE 356

Query: 344 YTQNTQII--VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
              N  I   +  +TG+M    +  AL  I  G A+IIIGTHAL QD++++Y L LVI+D
Sbjct: 357 LLTNAGINLTITTLTGDMTPTQKNHALLAIISGDANIIIGTHALIQDTVEFYDLGLVIID 416

Query: 402 EQHRFGVQQRLKLT---QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           EQHRFGV+QR  L    +  T PH+L+MTATPIPRT+ +T  GD++ S + E P GR+PI
Sbjct: 417 EQHRFGVEQRDSLRTKGKNHTTPHLLVMTATPIPRTIAMTFFGDLNHSTLNELPGGRRPI 476

Query: 459 KTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE--H 513
           K+ ++P           E ++  + +G + Y +CP+I     +    V+E    L E   
Sbjct: 477 KSYVVPEYLPKYTTRAYEVMREHIHQGHQIYIVCPRI-----NGPGGVLETHQHLSETEF 531

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               I ++HG++ D DK++ M  F NG   +LIATTVIEVGIDV +A+II+I  +E+ G+
Sbjct: 532 KNYRIGLLHGQLKDADKDTTMRQFANGDLDILIATTVIEVGIDVPNATIIMIRESENLGV 591

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           +QLHQLRGRVGRG   S C   +       +  R+  +  T DGF +AE DL QR EG++
Sbjct: 592 SQLHQLRGRVGRGGYDSICFFHHTAERGTPADKRIWQMAATTDGFQVAEIDLIQRHEGDV 651

Query: 634 LGIKQSGM-PKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           LG  QSG   K           L+  A +DAK+I+  + DL 
Sbjct: 652 LGTSQSGTNRKIAFLNLARDIGLINRANRDAKNIVAHNLDLA 693


>gi|15827885|ref|NP_302148.1| ATP-dependent DNA helicase RecG [Mycobacterium leprae TN]
 gi|13432220|sp|O69460|RECG_MYCLE RecName: Full=ATP-dependent DNA helicase recG
 gi|13093438|emb|CAC30624.1| ATP-dependent DNA helicase [Mycobacterium leprae]
          Length = 743

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 210/743 (28%), Positives = 354/743 (47%), Gaps = 78/743 (10%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE-----ERIVTIT 73
           VG K +  L ++            DLL ++P S+        +    +        +TI 
Sbjct: 12  VGAKAADSLDEV-----FGIRTVDDLLRHYPRSY---TKGATVRGAQDERPEAGEHITIV 63

Query: 74  GYISQHSSFQLQK---RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
             I++  +  ++K   ++  ++ +  G  ++   FF      +     +  ++ ++G++ 
Sbjct: 64  DVITEAVTLPMKKDSKKKYLRLTVGSGRNKVIATFFNAG--YISKGLTKDTRVMLSGEVG 121

Query: 131 KLKNRIIMVHPHYIFHNSQDVN--------------------------FPLIEAVYSLPT 164
             +  + + HP ++  +S D                                  +Y   T
Sbjct: 122 FFRGVMQLTHPAFLILDSPDGRNRGSSSLRRIADASQAVSGEVLMSAFERRFFPIYPAST 181

Query: 165 GLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPA 224
            L        + + L  L  + + +  DL  K    S  EA   IH      D      A
Sbjct: 182 KLQSWDIYACVRQVLEVLDPVADPLPADLRAKHGLVSEDEALRAIHLAESESD---RRRA 238

Query: 225 RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ-KILRNIPFSPTKSQESAIKD 283
           RERL +DE +  Q AL+  R     E G            +++R +PF  T+ Q      
Sbjct: 239 RERLTFDEAVGLQWALVTRRHGELSESGPSAPPRSDGLMAELMRRLPFELTEGQREVRDV 298

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           +   ++    + R+LQG+VGSGKT+VA++AM   ++AG Q V++AP  +LA QH   I+ 
Sbjct: 299 LSDGLAATRPLNRLLQGEVGSGKTIVAVLAMLQMIDAGYQCVLLAPTEVLAAQHLLSIRD 358

Query: 344 YTQNTQI-----------IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
                 +            V ++TG+M  A ++K    I  GQ  I+IGTHAL QD+I++
Sbjct: 359 VLGPLGMGCQLGGAENATQVALLTGSMTMAQKKKVRADIFSGQTGIVIGTHALLQDAIEF 418

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + L +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD+++S + 
Sbjct: 419 HNLGMVVVDEQHRFGVEQRDQLRTKARTGIMPHLLVMTATPIPRTVALTVYGDLEMSTLR 478

Query: 450 EKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESN----FR 501
           E P GR+PI + +I +      +D   +R+   ++ G++AY + P+I+E ++        
Sbjct: 479 ELPRGRQPITSNVIFVKDKPGWLDRAWQRILEEVAAGRQAYVVAPRIDETEDPQKGGQNS 538

Query: 502 SVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              E  + L+    S       +A++HGR+S  +K++ M +F+ G   +L+ T VIEVG+
Sbjct: 539 RPSETADGLYARLRSGELANVRLALMHGRLSADEKDAAMMAFRAGEIDVLVCTNVIEVGV 598

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A+I+++ +A+ FG++QLHQLRGR+GRG   S C+L         +  RL  +  T 
Sbjct: 599 DVPNATIMLVMDADRFGISQLHQLRGRIGRGTHPSLCLLASWVSPGSPAGRRLCAVAETM 658

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           DGF +A+ DLK+R+EG++LG  QSG      +     H   +E AR        + P L 
Sbjct: 659 DGFALADLDLKERREGDVLGRNQSGKAITLRMLSLAEHQVFIEAARDFCTRAY-EYPHLG 717

Query: 675 SVRGQSIRILLYLYQYNEAFQFI 697
                 +  L   +   +  +++
Sbjct: 718 LAPHPGLADLAARFIDTDRIEYL 740


>gi|327334282|gb|EGE75996.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes HL097PA1]
          Length = 749

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 205/718 (28%), Positives = 347/718 (48%), Gaps = 63/718 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  PL+    VG K +   S +      +     + L + P  ++       +S +  
Sbjct: 20  KELHRPLAE--AVGAKTAKAFSAL------HVGTVGEALGHLPRRYLTGTETTDLSHLVI 71

Query: 67  ERIVTITGYISQHSS--------FQLQKRRPYKILLNDGTGEITLLFFYRK--TEMLKNV 116
           +  V +   +              + + R+  +++L+DG   + + FF +       + +
Sbjct: 72  DTEVALVADVVGVEVHTNKTVTGRERRPRQRLEVMLSDGKACLPVTFFGKPHIVSYWQRI 131

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPLIEAVYS 161
           F         GK+ + +    +VHP ++  +               +  V    +  +Y 
Sbjct: 132 FSAHTHGIFVGKVGEFRGNPQLVHPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYP 191

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
             + L       +    L   P L + + + L Q+   PS+ EA++ IH P    + +  
Sbjct: 192 QTSKLRTWEIASVESMLLESTPELEDTLPEWLRQEADLPSLWEAYHAIHYPHSVAEADRG 251

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
           +   ERL ++E +A Q+ + + R+  ++      +  +G++       +PF+PT  Q+  
Sbjct: 252 A---ERLIWEEAIATQVTMAVRRRSAERHDAPVCSRRDGELLAAFEDRLPFTPTVGQDEV 308

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            + I  D+S    M R+LQG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  
Sbjct: 309 SRVIDADLSADRPMHRLLQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRT 368

Query: 341 IKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I     +               V ++TG+M  A  R AL  IA G A II+GTH+L    
Sbjct: 369 IINMLGDLASGGGLDAPEISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGR 428

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           + Y  + LV+VDEQHRFGV+QR  LT  +   PH L++TATPIPRT+ +T  GD+++S +
Sbjct: 429 VIYNDIGLVVVDEQHRFGVEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSL 488

Query: 449 TEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
            E P GR  ++T ++ +    + +    +R++     G + + +CP+I      +    R
Sbjct: 489 RELPTGRADVQTTVVDLPAHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGR 548

Query: 502 SVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                   L     +       +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+
Sbjct: 549 RPAAAVEELAPQLATGPLAGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGV 608

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A++++I +A+ FG++QLHQLRGR+GRG     C+L+   P    +  RL  +  + 
Sbjct: 609 DVPNATMMVIMDADRFGVSQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASR 668

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPD 672
           DGF +AE DL QR EG +LG  Q+G      + +   H  ++  ++  A+  + + PD
Sbjct: 669 DGFELAELDLAQRHEGNVLGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726


>gi|50842945|ref|YP_056172.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes KPA171202]
 gi|50840547|gb|AAT83214.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes KPA171202]
 gi|315106713|gb|EFT78689.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL030PA1]
          Length = 749

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 205/718 (28%), Positives = 346/718 (48%), Gaps = 63/718 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  PL+    VG K +   S +      +     + L + P  ++       +S +  
Sbjct: 20  KELHRPLAE--AVGAKTAKAFSAL------HVGTVGEALGHLPRRYLTGTETTDLSHLVI 71

Query: 67  ERIVTITGYISQHSS--------FQLQKRRPYKILLNDGTGEITLLFFYRK--TEMLKNV 116
           +  V +   +              + + R+  +++L+DG   + + FF +       + +
Sbjct: 72  DTEVALVADVVGVEVHTNKTVTGRERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRI 131

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPLIEAVYS 161
           F         GK+ + +    +VHP ++  +               +  V    +  +Y 
Sbjct: 132 FSAHTHGIFVGKVGEFRGNPQLVHPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYP 191

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
             + L       +    L   P L + + + L Q+   PS+ EA++ IH P    + +  
Sbjct: 192 QTSKLRTWEIASVESMLLESTPELEDTLPEWLRQEADLPSLWEAYHAIHYPHSVAEADRG 251

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
           +   ERL ++E +A Q+ + + R+  ++      +  +G +       +PF+PT  Q+  
Sbjct: 252 A---ERLIWEEAIATQVTMAVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEV 308

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            + I  D+S    M R+LQG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  
Sbjct: 309 SRVIDADLSADRPMHRLLQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRT 368

Query: 341 IKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I     +               V ++TG+M  A  R AL  IA G A II+GTH+L    
Sbjct: 369 IINMLGDLASGEGLDAPEISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGR 428

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           + Y  + LV+VDEQHRFGV+QR  LT  +   PH L++TATPIPRT+ +T  GD+++S +
Sbjct: 429 VIYNDIGLVVVDEQHRFGVEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSL 488

Query: 449 TEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
            E P GR  ++T ++ +    + +    +R++     G + + +CP+I      +    R
Sbjct: 489 RELPTGRADVQTTVVDLPAHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGR 548

Query: 502 SVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                   L     +       +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+
Sbjct: 549 PPAAAVEELAPQLATGPLAGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGV 608

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A++++I +A+ FG++QLHQLRGR+GRG     C+L+   P    +  RL  +  + 
Sbjct: 609 DVPNATMMVIMDADRFGVSQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASR 668

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPD 672
           DGF +AE DL QR EG +LG  Q+G      + +   H  ++  ++  A+  + + PD
Sbjct: 669 DGFELAELDLAQRHEGNVLGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726


>gi|326381570|ref|ZP_08203264.1| ATP-dependent DNA helicase RecG [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199817|gb|EGD56997.1| ATP-dependent DNA helicase RecG [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 756

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 218/691 (31%), Positives = 342/691 (49%), Gaps = 80/691 (11%)

Query: 65  SEERIVTITGYISQHSSFQLQKR--RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
                +T+ G I +     +++R  +  K+++NDG  +    FF  +   ++ V   G +
Sbjct: 53  EPGEWITVIGRIQKAQMISMKRRYGQFLKVVVNDGRADYEASFFNAR--WIQKVLKPGTR 110

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVN------------------------------ 152
           + + G +K  +++I + HP ++     D                                
Sbjct: 111 VAMAGTVKLFRDQIQLSHPDWMVMPEDDGIDVVGNAAMIGEMYADAAESGDEKTHGSTAS 170

Query: 153 -------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEA 205
                     I  +Y     +      + + + L+      + +  D    +   +  EA
Sbjct: 171 ADDARSFARDIIPMYPATKDVQTWEIWRAVRQVLADTVPAEDPLTDDQRTSRGLITGDEA 230

Query: 206 FNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQK 264
            + +H P   +D E     R RL +DE LA Q  L   R     E   P   V G +  +
Sbjct: 231 IHRVHLPENLEDIEAA---RARLKFDEALAVQTELARRRLSAVAESARPCPHVPGGLEDQ 287

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +L  +PF  T  Q   + +I +D++ ++ M R+LQG+VGSGKTLV+L+AM   V+ G Q 
Sbjct: 288 LLDRLPFELTGGQRDVLLEIGEDLADEHPMSRLLQGEVGSGKTLVSLLAMLRVVDNGHQC 347

Query: 325 VIMAPIGILAQQHYEFI-----------KKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
            I+AP  +LA QHY  +           +    +    V ++TG++  A +R+ L     
Sbjct: 348 AILAPTEVLAAQHYRTVMTMLGDLARAGELGAADGATRVGLLTGSLGTATKRQVLLDAVT 407

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATP 430
           G A I+IGTHAL ++ ++++ L +V+VDEQHRFGV+QR  L  K      PH L+MTATP
Sbjct: 408 GDAGIVIGTHALLEEHVEFFDLGMVVVDEQHRFGVEQRDVLRSKGRDDSRPHFLVMTATP 467

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYW 487
           IPRT+ + + GD+D S +TE P GR+PI T ++P+ +   +D V  R    +  G++ Y 
Sbjct: 468 IPRTVAMITFGDLDTSVMTELPRGRQPITTSVVPMRKQAWVDRVWARANEEIDAGRQVYV 527

Query: 488 ICPQI---------------EEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDK 530
           +C +I               E + E +  SV++    L     +   I I+HGR+   +K
Sbjct: 528 VCTKIGDEQTNAKRSKKSAKESEAEDDTISVLDLAEQLAAGPLAGRRIGILHGRLPADEK 587

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             VMD+F  G   +L+ATTVIEVG+DV +A+++ I NAE FG++QLHQLRGRVGRGE   
Sbjct: 588 NDVMDAFTRGEIDVLVATTVIEVGVDVPNATMMAIVNAERFGVSQLHQLRGRVGRGEHAG 647

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
            C+L+        S  RL  ++ + DGF +A  DL QR+EG+ILG  QSG    L     
Sbjct: 648 LCLLMTTAGDMGQSMERLRAVEASSDGFELARVDLAQRREGDILGALQSGGKSSLSFLSL 707

Query: 651 LHD-SLLEIARKDAKHILTQDPDLTSVRGQS 680
           L D  ++  AR  A+ I+  DPDL + R  +
Sbjct: 708 LDDTDVIADARDLAEQIVLDDPDLVAHRALA 738


>gi|118469068|ref|YP_886743.1| ATP-dependent DNA helicase RecG [Mycobacterium smegmatis str. MC2
           155]
 gi|118170355|gb|ABK71251.1| ATP-dependent DNA helicase RecG [Mycobacterium smegmatis str. MC2
           155]
          Length = 753

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 208/747 (27%), Positives = 358/747 (47%), Gaps = 90/747 (12%)

Query: 5   FLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID----RHYRPK 60
            +  L   L     +GKK +  L +             DLL ++P  + D    R     
Sbjct: 1   MMATLEDSLQFV--LGKKAADKLEEH-----FGLRTVNDLLRHYPRKYSDGMTVRGEGEA 53

Query: 61  ISEISEERIVTITGYISQHSSFQLQKR-----------RPYKILLNDGTGEITLLFFYRK 109
           + ++ E   VT    I++     +++            +  ++ L D   ++T  FF   
Sbjct: 54  L-DLEEGEHVTFIDVITEAQPGTMKRPVKTKTGKQFTPKYLRVKLGDHKPKVTATFFNAN 112

Query: 110 TEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF---------------- 153
              + +    G ++ ++G++K  ++ + + HP ++   S                     
Sbjct: 113 --WMIDELKVGTRLMLSGEVKYFRDTVQLNHPAFLVLESPSGRTIGTKSLKTIAEASGAS 170

Query: 154 ---------PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
                         +Y     +      + I + L+ L  +P+ + K  +Q++   S  +
Sbjct: 171 GEDMLAEFEKEFFPIYPASAKMQSWDIYRCIRQVLAVLDPIPDPLPKSFVQQRGLMSEDQ 230

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ--FKKEIGIPINVEGKIA 262
           A   I     A +      ARERL YDE +  Q  L+  R           P+ V+G + 
Sbjct: 231 ALRAI---HLAANSTERDRARERLTYDEAIGLQWGLVARRYGELAASGPSAPLRVDG-LV 286

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
             +   +PF  T  Q   +  I  +++    M R+LQG+VGSGKT+V+++AM   V+AG 
Sbjct: 287 AALRERLPFELTAGQREVLDVISGELASTRPMNRMLQGEVGSGKTIVSVLAMLQMVDAGY 346

Query: 323 QAVIMAPIGILAQQHYEFIKKY-----------TQNTQIIVEIITGNMPQAHRRKALERI 371
           Q  ++AP  +LA QH   ++                    V ++TG+M    +R   + +
Sbjct: 347 QCALLAPTEVLATQHARSVRDVLGPLAMAGELGGDEHGTRVALLTGSMTPQQKRAVRDEV 406

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTA 428
           A G A I+IGTHAL QD++++  L +V+VDEQHRFGV+QR  L  KA     PH+L+MTA
Sbjct: 407 ASGAAGIVIGTHALLQDAVEFDNLGMVVVDEQHRFGVEQRDTLRAKAPEGLTPHLLVMTA 466

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKK 484
           TPIPRT+ LT  GD++ S + E P GR+PI +  I +++    +D    R++  ++ G++
Sbjct: 467 TPIPRTVALTVYGDLETSTLRELPRGRQPITSNTIFVSQKPAWLDRAWARIREEVAAGRQ 526

Query: 485 AYWICPQIEEKKESNFRSVVE---------RFNSLHEHFTS------SIAIIHGRMSDID 529
           AY +  +I+E  + +     E             L+E   +       + ++HGR+S  +
Sbjct: 527 AYVVASRIDENDKPSGGKENEGRQAGPPPITVVELYERLRNGPLEGLRLGLMHGRLSGDE 586

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           K+ VM  F+ G   +L+ TTVIEVG+DV +++++++ +A+ FG++QLHQLRGR+GRG+  
Sbjct: 587 KDEVMSRFRAGEIDVLVCTTVIEVGVDVPNSTVMVVMDADRFGISQLHQLRGRIGRGQHP 646

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQ 648
           S C+L    P +  +  R+  + +T DGF +A+ DL++R+EG++LG+ QSG         
Sbjct: 647 SLCLLATRMPENSKAGERIKAVASTLDGFELADLDLEERREGDVLGLNQSGRTINLRFLS 706

Query: 649 PELHDSLLEIARKDAKHILTQDPDLTS 675
              H  ++  AR   +    QDP+ T 
Sbjct: 707 LRDHLEVITDARAFCETRYEQDPNDTG 733


>gi|302344077|ref|YP_003808606.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
 gi|301640690|gb|ADK86012.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
          Length = 702

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 222/703 (31%), Positives = 350/703 (49%), Gaps = 24/703 (3%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P  L  L   L    GVG K    L+            + D LF+ P  + DR     + 
Sbjct: 11  PWALPALARSLGALPGVGPKTVQALA------ARGLRTWGDGLFFLPPRYEDRRRVWPLD 64

Query: 63  EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            + E R+    G ++    +  ++ + ++++L+DG G + LL+F+ K   L+  F  GR+
Sbjct: 65  GLEEGRLCVARGRLTSSGPWG-RRGKVWRMVLDDGAGRLNLLWFHFKKAHLE-AFAVGRE 122

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVE-AL 179
           +   G+ +  +    MVHP               +I  VY     L     ++ + + A 
Sbjct: 123 VFAVGRAELAEGGWRMVHPEVFDEQKAAEGRAVGVILPVYPELASLGQGGVRRFMADLAG 182

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP----ARERLAYDELLA 235
             + ++P+ +   L  +    S+++A    H P    D     P     R  LA +EL  
Sbjct: 183 RTVDLIPDPLFGLLPARLYPCSVSQALRQAHLPGPESDPAELDPPTSAWRRVLAVNELFY 242

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q+ L L R+Q     G+ ++  G + ++ L  +PF+ T+ Q  A+  IL DM+    M 
Sbjct: 243 YQLGLWLKRRQRLSRPGLVVDPPGALVERFLAALPFALTEGQNQALAAILADMASGRPMG 302

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+L GDVGSGKT+VAL A AA  EAG Q  +MAP  +LA+QH    +   +   +   ++
Sbjct: 303 RLLAGDVGSGKTVVALAAAAAVAEAGAQTALMAPTEVLARQHLASAQALLEPLGLKAALV 362

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
            G    A  +K     A G A ++IGT A+    +++ +L LVI+DEQ RFGV QRL+L 
Sbjct: 363 LGGAD-AQGQKQARAAAQGGAALLIGTQAMLAARLEFERLGLVIIDEQQRFGVHQRLRLA 421

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K   PH+L+++ATPIPRT+ L   G +DIS + + P  R  I T ++   +  + +E +
Sbjct: 422 AKGLDPHLLVLSATPIPRTMALALAGHLDISPLPQLPGRRPKIATTVLAFEQRRQAVEAM 481

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVM 534
              L+ G++ Y ICP +E   +      VE    L E+F   +I ++HGR+    ++  +
Sbjct: 482 AATLAAGEQVYVICPLVEASDKIQAHDAVETHRRLGEYFPGQAIGLLHGRLDSAAQQRAL 541

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F+ G  + L+ATTV+EVG+DV  A+++I+  AE FGL QLHQLRGRVGRG++   C L
Sbjct: 542 EDFRAGQTRALVATTVVEVGLDVPAATLMIVLGAERFGLCQLHQLRGRVGRGQKPGRCCL 601

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           +  P   +    RL VL  T DG  +AE DL  R  G+ LG  Q+G+P    A       
Sbjct: 602 VTGPEPGELGRRRLEVLAATADGLAVAEADLAMRGPGQALGAGQAGLPPLRFAGEV---D 658

Query: 655 LLEIARKDAKHILTQ----DPDLTSVRGQSIRILLYLYQYNEA 693
           LL    +    +  Q    D  L ++  +++R    L +  EA
Sbjct: 659 LLPEVSRAVDGLFGQGRPDDEPLAALVAEAVRRWGRLMELVEA 701


>gi|93007226|ref|YP_581663.1| ATP-dependent DNA helicase RecG [Psychrobacter cryohalolentis K5]
 gi|92394904|gb|ABE76179.1| ATP-dependent DNA helicase RecG [Psychrobacter cryohalolentis K5]
          Length = 782

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 214/489 (43%), Positives = 303/489 (61%), Gaps = 16/489 (3%)

Query: 197 KSFPSIAEAFNIIHNPRKAKDF-----------EWTSPARERLAYDELLAGQIALLLMRK 245
            +  +I EA  ++H P    D              T  A +RL  +EL A Q++LL  R+
Sbjct: 273 YNL-TIFEALVLLHTPPTYTDAGQQYKLLTQLSARTHAACQRLIIEELTAHQLSLLYRRQ 331

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           Q  +       ++  +A K+   +PF  T +Q+  ++DI  DM+    MLR++QGDVG+G
Sbjct: 332 QLHQYKAPKCAIQSPLADKLFGALPFDLTGAQKRVMRDITADMATSIPMLRLVQGDVGAG 391

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KTLVA  A   A+++G Q  +MAP  ILA+QH    K + +   I V  + G      RR
Sbjct: 392 KTLVAAGAAGYALDSGWQVAVMAPTEILAEQHLVNFKNWFEPLGIGVGWLAGKQTAKQRR 451

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPH 422
           +ALE ++     +++GTHALFQD +Q+ KL LVI+DEQHRFGV+QR+ LT K    + PH
Sbjct: 452 EALEAVSENTVQVVVGTHALFQDQVQFAKLGLVIIDEQHRFGVEQRMALTNKGVAGSTPH 511

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+MTATPIPRTL ++  GD+D S I E P GR PI TV I  NR DEVIER+ V    G
Sbjct: 512 QLIMTATPIPRTLAMSVYGDMDTSIIDELPPGRTPITTVTIDRNRRDEVIERIAVNCEAG 571

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           ++AYW+C  +EE    + ++    +  L E     I ++HG+M   DK+++M +FK G  
Sbjct: 572 RQAYWVCSLVEESSVLDAQAAEATYEDLSERLDIRIGLVHGKMKGADKQAIMQAFKAGQL 631

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LLIATTVIEVG+DV +AS+++IENAE  GL+QLHQLRGRVGRG   S C+LLY  PLS+
Sbjct: 632 DLLIATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRVGRGSTKSYCVLLYQKPLSE 691

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               RL+VL+++ DGF+IA++DL+ R  GE+LG +Q+G   + +A     + L  IA++ 
Sbjct: 692 TGTERLNVLRDSTDGFVIAQKDLELRGPGELLGKRQTGNVGYYLADLIRDEQLFAIAQRL 751

Query: 663 AKHILTQDP 671
           AKH++  DP
Sbjct: 752 AKHLIA-DP 759



 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 20/225 (8%)

Query: 3   PSFLN--PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           P  L+   L  P++   GVG K +  L+++         R  DLL + P  + DR     
Sbjct: 10  PHLLDVLALDMPVTALAGVGPKVAEQLAQL------GIARIFDLLLHLPRDYEDRSRLVS 63

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I +++  +   ITG +    +     R    ++++D TG I+L FF +    L      G
Sbjct: 64  IGDVAHGQAAMITGRVVHVDT----NRSGMTVIVDDDTGTISLRFF-KVYRGLAQTMCLG 118

Query: 121 RKITVTGKIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             + + G++K  +    + HP Y I  +++ V    ++ +Y    GL  +  + +I  AL
Sbjct: 119 THLQLFGEVKVSRYGKQIHHPEYQIISSNETVVNTGLQPIYPSVKGLHQNKLRTLIKLAL 178

Query: 180 SRL--PVLPEWI--EKD--LLQKKSFPSIAEAFNIIHNPRKAKDF 218
             +    LP  +   +D  ++          A   I  P   +D 
Sbjct: 179 QTVRSQGLPMTLFTPEDFSVVADLPLVPFEPAKIPITEPDYPEDI 223


>gi|289428698|ref|ZP_06430381.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           J165]
 gi|289158096|gb|EFD06316.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           J165]
 gi|313773559|gb|EFS39525.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL074PA1]
 gi|313807917|gb|EFS46398.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL087PA2]
 gi|313811612|gb|EFS49326.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL083PA1]
 gi|313819702|gb|EFS57416.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL046PA2]
 gi|313825899|gb|EFS63613.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL063PA1]
 gi|313831354|gb|EFS69068.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL007PA1]
 gi|313834965|gb|EFS72679.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL056PA1]
 gi|314962050|gb|EFT06151.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL002PA2]
 gi|314974229|gb|EFT18325.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL053PA1]
 gi|314976660|gb|EFT20755.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL045PA1]
 gi|314978855|gb|EFT22949.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL072PA2]
 gi|314984468|gb|EFT28560.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL005PA1]
 gi|314986486|gb|EFT30578.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL005PA2]
 gi|314990845|gb|EFT34936.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL005PA3]
 gi|315081290|gb|EFT53266.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL078PA1]
 gi|315087173|gb|EFT59149.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL002PA3]
 gi|315089344|gb|EFT61320.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL072PA1]
 gi|327328369|gb|EGE70131.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes HL096PA2]
 gi|327444153|gb|EGE90807.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL043PA2]
 gi|327444966|gb|EGE91620.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL043PA1]
 gi|327446450|gb|EGE93104.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL013PA2]
 gi|328752205|gb|EGF65821.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL020PA1]
 gi|328760122|gb|EGF73701.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes HL099PA1]
 gi|332675894|gb|AEE72710.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes 266]
          Length = 749

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 205/718 (28%), Positives = 346/718 (48%), Gaps = 63/718 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  PL+    VG K +   S +      +     + L + P  ++       +S +  
Sbjct: 20  KELHRPLAE--AVGAKTAKAFSAL------HVGTVGEALGHLPRRYLTGTETTDLSHLVI 71

Query: 67  ERIVTITGYISQHSS--------FQLQKRRPYKILLNDGTGEITLLFFYRK--TEMLKNV 116
           +  V +   +              + + R+  +++L+DG   + + FF +       + +
Sbjct: 72  DTEVALVADVVGVEVHTNKTVTGRERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRI 131

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPLIEAVYS 161
           F         GK+ + +    +VHP ++  +               +  V    +  +Y 
Sbjct: 132 FSAHTHGIFVGKVGEFRGNPQLVHPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYQ 191

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
             + L       +    L   P L + + + L Q+   PS+ EA++ IH P    + +  
Sbjct: 192 QTSKLRTWEIASVESMLLESTPELEDTLPEWLRQEADLPSLWEAYHAIHYPHSVAEADRG 251

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
           +   ERL ++E +A Q+ + + R+  ++      +  +G +       +PF+PT  Q+  
Sbjct: 252 A---ERLIWEEAIATQVTMAVRRRSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEV 308

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            + I  D+S    M R+LQG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  
Sbjct: 309 SRVIDADLSADRPMHRLLQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRT 368

Query: 341 IKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I     +               V ++TG+M  A  R AL  IA G A II+GTH+L    
Sbjct: 369 IINMLGDLASGGGLDAPEISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGR 428

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           + Y  + LV+VDEQHRFGV+QR  LT  +   PH L++TATPIPRT+ +T  GD+++S +
Sbjct: 429 VIYNDIGLVVVDEQHRFGVEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSL 488

Query: 449 TEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
            E P GR  ++T ++ +    + +    +R++     G + + +CP+I      +    R
Sbjct: 489 RELPTGRADVQTTVVDLPAHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGR 548

Query: 502 SVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                   L     +       +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+
Sbjct: 549 RPAAAVEELAPQLATGPLAGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGV 608

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A++++I +A+ FG++QLHQLRGR+GRG     C+L+   P    +  RL  +  + 
Sbjct: 609 DVPNATMMVIMDADRFGVSQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASR 668

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPD 672
           DGF +AE DL QR EG +LG  Q+G      + +   H  ++  ++  A+  + + PD
Sbjct: 669 DGFELAELDLAQRHEGNVLGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726


>gi|313794017|gb|EFS42041.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL110PA1]
 gi|313801403|gb|EFS42654.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL110PA2]
 gi|313839875|gb|EFS77589.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL086PA1]
 gi|314963629|gb|EFT07729.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL082PA1]
 gi|315079483|gb|EFT51476.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL053PA2]
 gi|327451962|gb|EGE98616.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL092PA1]
          Length = 749

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 204/717 (28%), Positives = 345/717 (48%), Gaps = 63/717 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  PL+    VG K +   S +      +     + L + P  ++       +S +  
Sbjct: 20  KELHRPLAE--AVGAKTAKAFSAL------HVGTVGEALGHLPRRYLTGTETTDLSHLVI 71

Query: 67  ERIVTITGYISQHSS--------FQLQKRRPYKILLNDGTGEITLLFFYRK--TEMLKNV 116
           +  V +   +              + + R+  +++L+DG   + + FF +       + +
Sbjct: 72  DTEVALVADVVGVEVHTNKTVTGRERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRI 131

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPLIEAVYS 161
           F         GK+ + +    +VHP ++  +               +  V    +  +Y 
Sbjct: 132 FSAHTHGIFVGKVGEFRGNPQLVHPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYP 191

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
             + L       +    L   P L + + + L Q+   PS+ EA++ IH P    + +  
Sbjct: 192 QTSKLRTWEIASVESMLLESTPELEDTLPEWLRQEADLPSLWEAYHAIHYPHSVAEADRG 251

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
           +   ERL ++E +A Q+ + + R+  ++      +  +G +       +PF+PT  Q+  
Sbjct: 252 A---ERLIWEEAIATQVTMAVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEV 308

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            + I  D+S    M R+LQG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  
Sbjct: 309 SRVIDADLSADRPMHRLLQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRT 368

Query: 341 IKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I     +               V ++TG+M  A  R AL  IA G A II+GTH+L    
Sbjct: 369 IINMLGDLASGEGLDAPEISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGR 428

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           + Y  + LV+VDEQHRFGV+QR  LT  +   PH L++TATPIPRT+ +T  GD+++S +
Sbjct: 429 VIYNDIGLVVVDEQHRFGVEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSL 488

Query: 449 TEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
            E P GR  ++T ++ +    + +    +R++     G + + +CP+I      +    R
Sbjct: 489 RELPTGRADVQTTVVDLPAHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGR 548

Query: 502 SVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                   L     +       +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+
Sbjct: 549 PPAAAVEELAPQLATGPLAGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGV 608

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A++++I +A+ FG++QLHQLRGR+GRG     C+L+   P    +  RL  +  + 
Sbjct: 609 DVPNATMMVIMDADRFGVSQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASR 668

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDP 671
           DGF +AE DL QR EG +LG  Q+G      + +   H  ++  ++  A+  + + P
Sbjct: 669 DGFELAELDLAQRHEGNVLGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAP 725


>gi|195953636|ref|YP_002121926.1| ATP-dependent DNA helicase RecG [Hydrogenobaculum sp. Y04AAS1]
 gi|195933248|gb|ACG57948.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 798

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 224/667 (33%), Positives = 356/667 (53%), Gaps = 45/667 (6%)

Query: 33  CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI 92
              +     ID+L+Y P ++ +R     IS ++ +   T+   I ++  +  +++ P+ I
Sbjct: 112 LHASGLNTLIDVLWYFPYTYENRLVLKSISSLALDSYGTVLVKI-ENLIYDEKEKFPFSI 170

Query: 93  LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN 152
           +  DG  ++ L  F  K + +   + +G+ I V G +K+ + +  M+HP     +S++++
Sbjct: 171 IAADGKSKLVLK-FRAKDKSVMGWYQKGQNIVVYGMLKEFRGQKYMIHPKIFSESSKEID 229

Query: 153 FPLIEAVYSL------------PTGLSVDLFKKIIVEAL----SRLPVLPEWIEKDLLQK 196
             +I+ VY L             +     L +  I   L         L + + ++ L+ 
Sbjct: 230 --IIKPVYPLERFEDPQSILASSSQKRRKLLESSIKSILNYYKDYWQNLQDILPEEFLKD 287

Query: 197 KSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
                ++ AF IIH     KDF       S A++R  Y+E+   ++A+L  R   K    
Sbjct: 288 NDLIPLSTAFKIIHAEDYFKDFRSFESMLSKAKKRFLYEEIFIFELAMLKRRSLVKSLNA 347

Query: 253 IPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
             IN + + I +++  +I F  T +Q+ AI +I+ DM     M R+LQGDVGSGKTLV +
Sbjct: 348 PSINADPESIIKEVQSHISFPLTNAQKRAITEIINDMRSTKPMSRLLQGDVGSGKTLVGI 407

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            +  A ++ G QA +M P  ILA QHY+    +       V ++T +  +    K +   
Sbjct: 408 SSALAVLKDGFQAAVMVPTEILANQHYKNFHDFFSKLGYRVGLLTSSTSKTDIHKLIS-- 465

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--APHVLLMTAT 429
             G+ +I+IGTHAL Q+ +++  L   IVDEQHRFGV QR  L +K     PH+L M+AT
Sbjct: 466 -IGEINIVIGTHALVQEKVKFKNLGFAIVDEQHRFGVAQRQILLEKNNNLMPHMLYMSAT 524

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE---VIERLKVVLSEGKKAY 486
           PIPRT+ +   GD+DIS + E PA RKP+KT ++  +   +   +IE +K  LS G K Y
Sbjct: 525 PIPRTIAMGIFGDLDISVLDEMPAMRKPVKTSVLYSDNQKDMAFLIEHIKKELSNGNKVY 584

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            + P IEE ++ + ++    +      F    + ++HGRMSD +K  VM+ FK  +  +L
Sbjct: 585 IVYPLIEESEKLDLKAAQTEYEKWKNIFKDYKVLLLHGRMSDKEKSKVMEEFKE-SGHIL 643

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP------P 599
           ++TTVIEVGIDV +AS I+IE+A  FGL+QLHQLRGRVGRG++   C LL +        
Sbjct: 644 VSTTVIEVGIDVKEASTIVIEDAYRFGLSQLHQLRGRVGRGDKEGYCFLLVNSSFVKSQK 703

Query: 600 LSKN--SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP--ELHDSL 655
           L++   +  RL ++  T +GF I+ EDLK R  G++LG+ QSG   F  A    E H  L
Sbjct: 704 LTEQNATLQRLRIMVKTRNGFEISLEDLKLRGPGDVLGLSQSGYFGFNFANLKNEEHLRL 763

Query: 656 LEIARKD 662
           +   R+ 
Sbjct: 764 MSTIREA 770


>gi|313822191|gb|EFS59905.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL036PA1]
 gi|313823574|gb|EFS61288.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL036PA2]
 gi|314924585|gb|EFS88416.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL036PA3]
          Length = 749

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 205/718 (28%), Positives = 346/718 (48%), Gaps = 63/718 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  PL+    VG K +   S +      +     + L + P  ++       +S +  
Sbjct: 20  KELHRPLAE--AVGAKTAKAFSAL------HVGTVGEALGHLPRRYLTGTETTDLSHLVI 71

Query: 67  ERIVTITGYISQHSS--------FQLQKRRPYKILLNDGTGEITLLFFYRK--TEMLKNV 116
           +  V +   +              + + R+  +++L+DG   + + FF +       + +
Sbjct: 72  DTEVALVADVVGVEVHTNKTVTGRERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRI 131

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPLIEAVYS 161
           F         GK+ + +    +VHP ++  +               +  V    +  +Y 
Sbjct: 132 FSAHTHGIFVGKVGEFRGNPQLVHPDFVMIDRNGKIVAGREEGKVMAAQVQRHGLLGLYQ 191

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
             + L       +    L   P L + + + L Q+   PS+ EA++ IH P    + +  
Sbjct: 192 QTSKLRTWEIASVESMLLESTPELEDTLPEWLRQEADLPSLWEAYHAIHYPHSVAEADRG 251

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
           +   ERL ++E +A Q+ + + R+  ++      +  +G +       +PF+PT  Q+  
Sbjct: 252 A---ERLIWEEAIATQVTMAVRRRSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEV 308

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            + I  D+S    M R+LQG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  
Sbjct: 309 SRVIDADLSADRPMHRLLQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRT 368

Query: 341 IKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I     +               V ++TG+M  A  R AL  IA G A II+GTH+L    
Sbjct: 369 IINMLGDLASGGGLDAPEISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGR 428

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           + Y  + LV+VDEQHRFGV+QR  LT  +   PH L++TATPIPRT+ +T  GD+++S +
Sbjct: 429 VIYNDIGLVVVDEQHRFGVEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSL 488

Query: 449 TEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
            E P GR  ++T ++ +    + +    +R++     G + + +CP+I      +    R
Sbjct: 489 RELPTGRADVQTTVVDLPAHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGR 548

Query: 502 SVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                   L     +       +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+
Sbjct: 549 RPAAAVEELAPQLATGPLAGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGV 608

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A++++I +A+ FG++QLHQLRGR+GRG     C+L+   P    +  RL  +  + 
Sbjct: 609 DVPNATMMVIMDADRFGVSQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASR 668

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPD 672
           DGF +AE DL QR EG +LG  Q+G      + +   H  ++  ++  A+  + + PD
Sbjct: 669 DGFELAELDLAQRHEGNVLGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726


>gi|313836631|gb|EFS74345.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL037PA2]
 gi|314928141|gb|EFS91972.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL044PA1]
 gi|314972139|gb|EFT16236.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL037PA3]
 gi|328907998|gb|EGG27758.1| putative ATP-dependent DNA helicase RecG [Propionibacterium sp.
           P08]
          Length = 749

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 205/717 (28%), Positives = 343/717 (47%), Gaps = 63/717 (8%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L  PL+    VG K +   S +      +     + L + P  ++       +S +  +
Sbjct: 21  ELHRPLAE--AVGAKTAKAFSAL------HVNTVGEALGHLPRRYLTGTETTDLSHLVID 72

Query: 68  RIVTITGYISQHSS--------FQLQKRRPYKILLNDGTGEITLLFFYRK--TEMLKNVF 117
             V +   I              + + R+  +++L+DG   + + FF +       + +F
Sbjct: 73  TEVALVADIVGVEVHTNKTVTGRERRPRQRLEVMLSDGKAHLPVTFFGKPHIVSYWQRIF 132

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPLIEAVYSL 162
                    GK+ + +    +VHP ++  +               +  V    +  +Y  
Sbjct: 133 SAHTHGIFVGKVGEFRGNPQLVHPDFVMIDRNGRVVAGREEGKVMAAQVQRHGLLGLYPQ 192

Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222
            + L       +    L   P L + + + + Q+    S+ EA++ IH+P    +    +
Sbjct: 193 TSKLRTWEIASVESMLLESTPELEDTLPEWVRQEADLLSLWEAYDAIHHPHSVAEASRGA 252

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAI 281
              ERL ++E +A Q  + + R+  ++         +G +       +PF+PT  Q+   
Sbjct: 253 ---ERLIWEEAIATQATMAVRRRSAERHDAPVCPRRDGGLLAAFENRLPFAPTAGQDEVS 309

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           + I  D+S    M R+LQG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  I
Sbjct: 310 RAIDADLSSDRPMHRLLQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTI 369

Query: 342 KKYTQNTQII-----------VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
                                V ++TG+M  A  R +L  IA G A II+GTH+L    +
Sbjct: 370 TSMLGGLASGGGLDAPEISTGVALLTGSMKAAATRASLADIASGAAGIIVGTHSLLSGRV 429

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            Y  + LV+VDEQHRFGV+QR  LT      PH L++TATPIPRT+ +T  GD+++S + 
Sbjct: 430 IYNDIGLVVVDEQHRFGVEQRSVLTTGDGARPHELVLTATPIPRTVAMTIFGDLEVSSLR 489

Query: 450 EKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RS 502
           E P+GR  ++T ++ +    + +    +R++     G + + ICP+I      +    R 
Sbjct: 490 EVPSGRADVQTTVVDLPAHGSWLTRAWQRIREEYDAGHQVFVICPRISSDDADDVEGGRP 549

Query: 503 VVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                  L     +       +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+D
Sbjct: 550 PTAAVEELATQLATGSLAGLKVEALHSRLDSSEKDLVMDRFVKGESQVLISTTVIEVGVD 609

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +A++++I +A+ FG++QLHQLRGR+GRG     C+L+   P    +  RL  +  + D
Sbjct: 610 VPNATMMVIMDADRFGVSQLHQLRGRIGRGSLPGLCLLVTTAPPGSVARERLDAVAASRD 669

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPD 672
           GF +AE DL QR EG +LG  Q+G      + +   H  ++  ++  A+  +T+ PD
Sbjct: 670 GFELAELDLAQRHEGNVLGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVTETPD 726


>gi|327457710|gb|EGF04365.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL083PA2]
          Length = 749

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 207/725 (28%), Positives = 347/725 (47%), Gaps = 66/725 (9%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  PL+    VG K +   S +      +     + L + P  ++       +S +  
Sbjct: 20  KELHRPLAE--AVGAKTAKAFSAL------HVGTVGEALGHLPRRYLTGTETTDLSHLVI 71

Query: 67  ERIVTITGYISQHSS--------FQLQKRRPYKILLNDGTGEITLLFFYRK--TEMLKNV 116
           +  V +   +              + + R+  +++L+DG   + + FF +       + +
Sbjct: 72  DTEVALVADVVGVEVHTNKTVTGRERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRI 131

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPLIEAVYS 161
           F         GK+ + +    +VHP ++  +               +  V    +  +Y 
Sbjct: 132 FSAHTHGIFVGKVGEFRGNPQLVHPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYP 191

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
             + L       +    L   P L + + + L Q+   PS+ EA++ IH P    + +  
Sbjct: 192 QTSKLRTWEIASVESMLLESTPELEDTLPEWLRQEADLPSLWEAYHAIHYPHSVAEADRG 251

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
           +   ERL ++E +A Q+ + + R+  ++      +  +G +       +PF+PT  Q+  
Sbjct: 252 A---ERLIWEEAIATQVTMAVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEV 308

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            + I  D+S    M R+LQG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  
Sbjct: 309 SRVIDADLSADRPMHRLLQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRT 368

Query: 341 IKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I     +               V ++TG+M  A  R AL  IA G A II+GTH+L    
Sbjct: 369 IINMLGDLASGEGLDAPEISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGR 428

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           + Y  + LV+VDEQHRFGV+QR  LT  +   PH L++TATPIPRT+ +T  GD+++S +
Sbjct: 429 VIYNDIGLVVVDEQHRFGVEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSL 488

Query: 449 TEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
            E P GR  ++T ++ +    + +     R++     G + + +CP+I      +    R
Sbjct: 489 RELPTGRADVQTTVVDLPAHGSWLTRAWRRIREECDAGHQVFVVCPRINSDDADDVEGGR 548

Query: 502 SVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                   L     +       +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+
Sbjct: 549 PPAAAVEELAPQLATGPLAGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGV 608

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A++++I +A+ FG++QLHQLRGR+GRG     C+L+   P    +  RL  +  + 
Sbjct: 609 DVPNATMMVIMDADRFGVSQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASR 668

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQ---DP 671
           DGF +AE DL QR EG +LG  Q+G      + +   H  ++  ++  A+  + +   DP
Sbjct: 669 DGFELAELDLAQRHEGNVLGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPGDP 728

Query: 672 DLTSV 676
            L  V
Sbjct: 729 RLVDV 733


>gi|320528411|ref|ZP_08029573.1| putative ATP-dependent DNA helicase RecG [Solobacterium moorei
           F0204]
 gi|320131325|gb|EFW23893.1| putative ATP-dependent DNA helicase RecG [Solobacterium moorei
           F0204]
          Length = 670

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 209/676 (30%), Positives = 340/676 (50%), Gaps = 29/676 (4%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
            K    L ++            DLL Y+P  +         S+   +  V   G + Q  
Sbjct: 12  PKRLEVLHQL------GLHTTDDLLVYYPYRYEVITT-SAFSDWKIKDKVWFEGEVVQLP 64

Query: 81  SFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
               + R       +      +T+  F R            + +T+ G + +  +++  +
Sbjct: 65  RSWRKGRLVTTTFQVRSQEQILTITIFNRPWA---KSLNLNQILTIQG-VYQGNSKVTAI 120

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKS 198
                           I  +YS+  G+     + II   L++L   + + I  +  Q   
Sbjct: 121 SYD----TKPLAEHTSITPIYSIKEGIRQKTLQTIIHSVLNQLQDEIIDDIPDEFRQAYR 176

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QFKKEIGIPINV 257
              +  A+  IH P    + +    A   L Y E L    A+ LMR     +    P   
Sbjct: 177 LLPLKVAYRCIHIPSSMNEVQ---IAVRTLKYAEFLRFFTAIQLMRSTDGIRITKKPKIF 233

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
             K  Q+ ++ + F  T  Q+  ++ IL DM   + M R++QGDVG GKT+VA +A+ AA
Sbjct: 234 SSKKIQQAIQTLSFELTADQKDTLEKILNDMGSTHTMYRLVQGDVGCGKTVVATLALYAA 293

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             +G Q  ++AP  ILA+QHY  + +      +  E++   +  A +++ LE +A G+ +
Sbjct: 294 FLSGYQGAMLAPTEILARQHYISVNQVLAPFGVKTEVLYSALTSAKKKEILEDVASGKIN 353

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH++ QDS+ ++KL L I DEQ RFGV QR  L QK      LLM+ATPIPRTL  
Sbjct: 354 ILIGTHSMIQDSVTFHKLGLTIADEQQRFGVSQRKALKQKGEQVDFLLMSATPIPRTLAA 413

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +  GD+D+S I   PAGR    T ++  N    V++ +K +L  G++ Y IC  ++E +E
Sbjct: 414 SLFGDMDVSTIETMPAGRITPVTTLVKENSFRTVLDDIKCLLKSGRQLYVICAAVDENEE 473

Query: 498 SNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              R+V +   S+ + F    +A +HGRM+  +K+++M +F     ++L++TTV+EVG++
Sbjct: 474 YYARNVYDTTESIQKLFPQYKVACLHGRMTADEKQAIMQAFNTNDIQILVSTTVVEVGVN 533

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           VV+A+ +II +A+ FGL+QLHQLRGR+ RG E   C LL      +    RL VL  + +
Sbjct: 534 VVNATGMIIYDADRFGLSQLHQLRGRIQRGSEQGYCWLLTASHEERV-LQRLDVLVKSNN 592

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT--QDPD-- 672
           GF I+ EDL+ R  G+ILG +QSG+P F++       +++  ARKDA  ++    +PD  
Sbjct: 593 GFEISYEDLRLRGPGDILGTRQSGVPDFILGNIVEDTAMINQARKDALKVMESADNPDYQ 652

Query: 673 --LTSVRGQSIRILLY 686
             L +VR ++ +   Y
Sbjct: 653 ILLETVRKRNEKNAEY 668


>gi|315095369|gb|EFT67345.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL038PA1]
          Length = 749

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 204/718 (28%), Positives = 345/718 (48%), Gaps = 63/718 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  PL+    VG K +   S +      +     + L + P  ++       +S +  
Sbjct: 20  KELHRPLAE--AVGAKTAKAFSAL------HVGTVGEALGHLPRRYLTGTETTDLSHLVI 71

Query: 67  ERIVTITGYISQHSS--------FQLQKRRPYKILLNDGTGEITLLFFYRK--TEMLKNV 116
           +  V +   +              + + R+  +++L+DG   + + FF +       + +
Sbjct: 72  DTEVALVADVVGVEVHTNKTVTGRERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRI 131

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPLIEAVYS 161
           F         GK+ + +    +VHP ++  +               +       +  +Y 
Sbjct: 132 FSAHTHGIFVGKVGEFRGNPQLVHPDFVMIDRNGKVVAGREEGKVMAAQGQRHGLLGLYQ 191

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
             + L       +    L   P L + + + L Q+   PS+ EA++ IH P    + +  
Sbjct: 192 QTSKLRTWEIASVESMLLESTPELEDTLPEWLRQEADLPSLWEAYHAIHYPHSVAEADRG 251

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
           +   ERL ++E +A Q+ + + R+  ++      +  +G +       +PF+PT  Q+  
Sbjct: 252 A---ERLIWEEAIATQVTMAVRRRSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEV 308

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            + I  D+S    M R+LQG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  
Sbjct: 309 SRVIDADLSADRPMHRLLQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRT 368

Query: 341 IKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I     +               V ++TG+M  A  R AL  IA G A II+GTH+L    
Sbjct: 369 IINMLGDLASGGGLDAPEISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGR 428

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           + Y  + LV+VDEQHRFGV+QR  LT  +   PH L++TATPIPRT+ +T  GD+++S +
Sbjct: 429 VIYNDIGLVVVDEQHRFGVEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSL 488

Query: 449 TEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
            E P GR  ++T ++ +    + +    +R++     G + + +CP+I      +    R
Sbjct: 489 RELPTGRADVQTTVVDLPAHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGR 548

Query: 502 SVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                   L     +       +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+
Sbjct: 549 RPAAAVEELAPQLATGPLAGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGV 608

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A++++I +A+ FG++QLHQLRGR+GRG     C+L+   P    +  RL  +  + 
Sbjct: 609 DVPNATMMVIMDADRFGVSQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASR 668

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPD 672
           DGF +AE DL QR EG +LG  Q+G      + +   H  ++  ++  A+  + + PD
Sbjct: 669 DGFELAELDLAQRHEGNVLGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726


>gi|327329764|gb|EGE71520.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes HL096PA3]
          Length = 749

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 207/718 (28%), Positives = 349/718 (48%), Gaps = 63/718 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  PL+    VG K +   S +      +     + L + P  ++       +S +  
Sbjct: 20  KELHRPLAE--AVGAKTAKAFSAL------HVGTVGEALGHLPRRYLTGTETTDLSHLVI 71

Query: 67  ERIVTITG-----YISQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRK--TEMLKNV 116
           +  V +        +  + +   ++RRP    +++L+DG   + + FF +       + +
Sbjct: 72  DTEVALVADVVGVEVHTNKTVTGRERRPSQRLEVMLSDGKARLPVTFFGKPHIVSYWQRI 131

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPLIEAVYS 161
           F         GK+ + +    +VHP ++  +               +  V    +  +Y 
Sbjct: 132 FSAHTHGIFVGKVGEFRGNPQLVHPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYQ 191

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
             + L       +    L   P L + + + L Q+   PS+ EA++ IH P    + +  
Sbjct: 192 QTSKLRTWEIASVESMLLESTPELEDTLPEWLRQEADLPSLWEAYHAIHYPHSVAEADRG 251

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
           +   ERL ++E +A Q+ + + R+  ++      +  +G +       +PF+PT  Q+  
Sbjct: 252 A---ERLIWEEAIATQVTMAVRRRSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEV 308

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            + I  D+S    M R+LQG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  
Sbjct: 309 SRVIDADLSADRPMHRLLQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRT 368

Query: 341 IKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I     +               V ++TG+M  A  R AL  IA G A II+GTH+L    
Sbjct: 369 IINMLGDLASGGGLDAPEISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGR 428

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           + Y  + LV+VDEQHRFGV+QR  LT  +   PH L++TATPIPRT+ +T  GD+++S +
Sbjct: 429 VIYNDIGLVVVDEQHRFGVEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSL 488

Query: 449 TEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
            E P GR  ++T ++ +    + +    +R++     G + + +CP+I      +    R
Sbjct: 489 RELPTGRADVQTTVVDLPAHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGR 548

Query: 502 SVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                   L     +       +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+
Sbjct: 549 RPAAAVEELAPQLATGPLAGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGV 608

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A++++I +A+ FG++QLHQLRGR+GRG     C+L+   P    +  RL  +  + 
Sbjct: 609 DVPNATMMVIMDADRFGVSQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASR 668

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPD 672
           DGF +AE DL QR EG +LG  Q+G      + +   H  ++  ++  A+  + + PD
Sbjct: 669 DGFELAELDLAQRHEGNVLGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 726


>gi|295131015|ref|YP_003581678.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes SK137]
 gi|291375406|gb|ADD99260.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes SK137]
          Length = 739

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 205/718 (28%), Positives = 346/718 (48%), Gaps = 63/718 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  PL+    VG K +   S +      +     + L + P  ++       +S +  
Sbjct: 10  KELHRPLAE--AVGAKTAKAFSAL------HVGTVGEALGHLPRRYLTGTETTDLSHLVI 61

Query: 67  ERIVTITGYISQHSS--------FQLQKRRPYKILLNDGTGEITLLFFYRK--TEMLKNV 116
           +  V +   +              + + R+  +++L+DG   + + FF +       + +
Sbjct: 62  DTEVALVADVVGVEVHTNKTVTGRERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRI 121

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPLIEAVYS 161
           F         GK+ + +    +VHP ++  +               +  V    +  +Y 
Sbjct: 122 FSAHTHGIFVGKVGEFRGNPQLVHPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYQ 181

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
             + L       +    L   P L + + + L Q+   PS+ EA++ IH P    + +  
Sbjct: 182 QTSKLRTWEIASVESMLLESTPELEDTLPEWLRQEADLPSLWEAYHAIHYPHSVAEADRG 241

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
           +   ERL ++E +A Q+ + + R+  ++      +  +G +       +PF+PT  Q+  
Sbjct: 242 A---ERLIWEEAIATQVTMAVRRRSAERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEV 298

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            + I  D+S    M R+LQG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  
Sbjct: 299 SRVIDADLSADRPMHRLLQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRT 358

Query: 341 IKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I     +               V ++TG+M  A  R AL  IA G A II+GTH+L    
Sbjct: 359 IINMLGDLASGGGLDAPEISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGR 418

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           + Y  + LV+VDEQHRFGV+QR  LT  +   PH L++TATPIPRT+ +T  GD+++S +
Sbjct: 419 VIYNDIGLVVVDEQHRFGVEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSL 478

Query: 449 TEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
            E P GR  ++T ++ +    + +    +R++     G + + +CP+I      +    R
Sbjct: 479 RELPTGRADVQTTVVDLPAHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGR 538

Query: 502 SVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                   L     +       +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+
Sbjct: 539 RPAAAVEELAPQLATGPLAGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGV 598

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A++++I +A+ FG++QLHQLRGR+GRG     C+L+   P    +  RL  +  + 
Sbjct: 599 DVPNATMMVIMDADRFGVSQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASR 658

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPD 672
           DGF +AE DL QR EG +LG  Q+G      + +   H  ++  ++  A+  + + PD
Sbjct: 659 DGFELAELDLAQRHEGNVLGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 716


>gi|289426329|ref|ZP_06428072.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           SK187]
 gi|289153057|gb|EFD01775.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           SK187]
          Length = 739

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 204/717 (28%), Positives = 345/717 (48%), Gaps = 63/717 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  PL+    VG K +   S +      +     + L + P  ++       +S +  
Sbjct: 10  KELHRPLAE--AVGAKTAKAFSAL------HVGTVGEALGHLPRRYLTGTETTDLSHLVI 61

Query: 67  ERIVTITGYISQHSS--------FQLQKRRPYKILLNDGTGEITLLFFYRK--TEMLKNV 116
           +  V +   +              + + R+  +++L+DG   + + FF +       + +
Sbjct: 62  DTEVALVADVVGVEVHTNKTVTGRERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRI 121

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPLIEAVYS 161
           F         GK+ + +    +VHP ++  +               +  V    +  +Y 
Sbjct: 122 FSAHTHGIFVGKVGEFRGNPQLVHPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYP 181

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
             + L       +    L   P L + + + L Q+   PS+ EA++ IH P    + +  
Sbjct: 182 QTSKLRTWEIASVESMLLESTPELEDTLPEWLRQEADLPSLWEAYHAIHYPHSVAEADRG 241

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
           +   ERL ++E +A Q+ + + R+  ++      +  +G +       +PF+PT  Q+  
Sbjct: 242 A---ERLIWEEAIATQVTMAVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEV 298

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            + I  D+S    M R+LQG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  
Sbjct: 299 SRVIDADLSADRPMHRLLQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRT 358

Query: 341 IKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I     +               V ++TG+M  A  R AL  IA G A II+GTH+L    
Sbjct: 359 IINMLGDLASGEGLDAPEISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGR 418

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           + Y  + LV+VDEQHRFGV+QR  LT  +   PH L++TATPIPRT+ +T  GD+++S +
Sbjct: 419 VIYNDIGLVVVDEQHRFGVEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSL 478

Query: 449 TEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
            E P GR  ++T ++ +    + +    +R++     G + + +CP+I      +    R
Sbjct: 479 RELPTGRADVQTTVVDLPAHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGR 538

Query: 502 SVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                   L     +       +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+
Sbjct: 539 PPAAAVEELAPQLATGPLAGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGV 598

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A++++I +A+ FG++QLHQLRGR+GRG     C+L+   P    +  RL  +  + 
Sbjct: 599 DVPNATMMVIMDADRFGVSQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASR 658

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDP 671
           DGF +AE DL QR EG +LG  Q+G      + +   H  ++  ++  A+  + + P
Sbjct: 659 DGFELAELDLAQRHEGNVLGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAP 715


>gi|314968539|gb|EFT12637.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL037PA1]
          Length = 749

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 204/717 (28%), Positives = 344/717 (47%), Gaps = 63/717 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  PL+    VG K +   S +      +     + L + P  ++       +S +  
Sbjct: 20  KELHRPLAE--AVGAKTAKAFSAL------HVGTVGEALGHLPRRYLTGTETTDLSHLVI 71

Query: 67  ERIVTITGYISQHSS--------FQLQKRRPYKILLNDGTGEITLLFFYRK--TEMLKNV 116
           +  V +   +              + + R+  +++L+DG   + + FF +       + +
Sbjct: 72  DTEVALVADVVGVEVHTNKTVTGRERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRI 131

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPLIEAVYS 161
           F         GK+ + +    +VHP ++  +               +  V    +  +Y 
Sbjct: 132 FSAHTHGIFVGKVGEFRGNPQLVHPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYP 191

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
             + L       +    L   P L + + + L Q+   PS+ EA++ IH P    + +  
Sbjct: 192 QTSKLRTWEIASVESMLLESTPELEDTLPEWLRQEADLPSLWEAYHAIHYPHSVAEADRG 251

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
           +   ERL ++E +A Q+ + + R+  ++      +  +G +       +PF+PT  Q+  
Sbjct: 252 A---ERLIWEEAIATQVTMAVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEV 308

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            + I  D+S    M R+LQG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  
Sbjct: 309 SRVIDADLSADRPMHRLLQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRT 368

Query: 341 IKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I     +               V ++TG+M  A  R AL  IA G A II+GTH+L    
Sbjct: 369 IINMLGDLASGEGLDAPEISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGR 428

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           + Y  + LV+VDEQHRFGV+QR  LT  +   PH L++TATPIPRT+ +T  GD+++S +
Sbjct: 429 VIYNDIGLVVVDEQHRFGVEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSL 488

Query: 449 TEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
            E P GR  ++T ++ +    + +     R++     G + + +CP+I      +    R
Sbjct: 489 RELPTGRADVQTTVVDLPAHGSWLTRAWRRIREECDAGHQVFVVCPRINSDDADDVEGGR 548

Query: 502 SVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                   L     +       +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+
Sbjct: 549 PPAAAVEELAPQLATGPLAGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGV 608

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A++++I +A+ FG++QLHQLRGR+GRG     C+L+   P    +  RL  +  + 
Sbjct: 609 DVPNATMMVIMDADRFGVSQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASR 668

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDP 671
           DGF +AE DL QR EG +LG  Q+G      + +   H  ++  ++  A+  + + P
Sbjct: 669 DGFELAELDLAQRHEGNVLGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAP 725


>gi|313763622|gb|EFS34986.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL013PA1]
 gi|313816802|gb|EFS54516.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL059PA1]
 gi|313829579|gb|EFS67293.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL063PA2]
 gi|314914626|gb|EFS78457.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL005PA4]
 gi|314920828|gb|EFS84659.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL050PA3]
 gi|314954335|gb|EFS98741.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL027PA1]
 gi|314957387|gb|EFT01490.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL002PA1]
 gi|315099250|gb|EFT71226.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL059PA2]
 gi|315100516|gb|EFT72492.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL046PA1]
 gi|315109049|gb|EFT81025.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL030PA2]
 gi|327455001|gb|EGF01656.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL087PA3]
 gi|328755165|gb|EGF68781.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL087PA1]
 gi|328758056|gb|EGF71672.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL025PA2]
          Length = 749

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 204/717 (28%), Positives = 344/717 (47%), Gaps = 63/717 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  PL+    VG K +   S +      +     + L + P  ++       +S +  
Sbjct: 20  KELHRPLAE--AVGAKTAKAFSAL------HVGTVGEALGHLPRRYLTGTETTDLSHLVI 71

Query: 67  ERIVTITGYISQHSS--------FQLQKRRPYKILLNDGTGEITLLFFYRK--TEMLKNV 116
           +  V +   +              + + R+  +++L+DG   + + FF +       + +
Sbjct: 72  DTEVALVADVVGVEVHTNKTVTGRERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRI 131

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPLIEAVYS 161
           F         GK+ + +    +VHP ++  +               +  V    +  +Y 
Sbjct: 132 FSAHTHGIFVGKVGEFRGNPQLVHPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYP 191

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
             + L       +    L   P L + + + L Q+   PS+ EA++ IH P    + +  
Sbjct: 192 QTSKLRTWEIASVESMLLESTPELEDTLPEWLRQEADLPSLWEAYHAIHYPHSVAEADRG 251

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
           +   ERL ++E +A Q+ + + R+  ++      +  +G +       +PF+PT  Q+  
Sbjct: 252 A---ERLIWEEAIATQVTMAVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEV 308

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            + I  D+S    M R+LQG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  
Sbjct: 309 SRVIDADLSADRPMHRLLQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRT 368

Query: 341 IKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I     +               V ++TG+M  A  R AL  IA G A II+GTH+L    
Sbjct: 369 IINMLGDLASGEGLDAPEISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGR 428

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           + Y  + LV+VDEQHRFGV+QR  LT  +   PH L++TATPIPRT+ +T  GD+++S +
Sbjct: 429 VIYNDIGLVVVDEQHRFGVEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSL 488

Query: 449 TEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
            E P GR  ++T ++ +    + +     R++     G + + +CP+I      +    R
Sbjct: 489 RELPTGRADVQTTVVDLPAHGSWLTRAWRRIREECDAGHQVFVVCPRINSDDADDVEGGR 548

Query: 502 SVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                   L     +       +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+
Sbjct: 549 PPAAAVEELAPQLATGPLAGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGV 608

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A++++I +A+ FG++QLHQLRGR+GRG     C+L+   P    +  RL  +  + 
Sbjct: 609 DVPNATMMVIMDADRFGVSQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASR 668

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDP 671
           DGF +AE DL QR EG +LG  Q+G      + +   H  ++  ++  A+  + + P
Sbjct: 669 DGFELAELDLAQRHEGNVLGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAP 725


>gi|327399690|ref|YP_004340559.1| DEAD/DEAH box helicase domain-containing protein [Hippea maritima
           DSM 10411]
 gi|327182319|gb|AEA34500.1| DEAD/DEAH box helicase domain protein [Hippea maritima DSM 10411]
          Length = 716

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 213/698 (30%), Positives = 334/698 (47%), Gaps = 42/698 (6%)

Query: 21  KKYSLFLSKII-----------NCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
           KK +  L+K I                  T   DLL + P    +   +     I     
Sbjct: 43  KKTADTLTKDILELKLPKATQEKLTRRGITTIKDLLSFEPLRIENYSLKDP-KSIKNGEY 101

Query: 70  VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVF---FEGRKITVT 126
             I G +   +    +  R   +LLN     I   +F R T  +K +      G +I   
Sbjct: 102 CAIKGIVLSKN----RGLRVLSVLLNSKGVHIRCNWF-RLTPYIKRMLSSIKPGDEIVCL 156

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK  +    + + HP  I     + +  +   VY    GL      K   +A+  LP  P
Sbjct: 157 GKASRDGFLLQLNHPKLIKAKEFEPSKRI---VYP-NIGLRNTTIAKAKEKAMLMLPKRP 212

Query: 187 -EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            +++   ++ K + P + E F  +      K     S  ++R  Y+E+    + L L  K
Sbjct: 213 FDYLPYSVISKNNLPLLDEFFEHL------KSDGADSSIQKRQKYEEMFFLLLGLRLQEK 266

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           +  ++    I  +     ++ +++PF  T  Q  AI +IL+DM++   MLR+LQGDVG G
Sbjct: 267 RLTQKTAPSIETQADFLDEVKKHLPFELTNGQIQAIGEILKDMTRSKPMLRLLQGDVGCG 326

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VALI   AA++A  Q  IMAP   LA Q +    K     +    ++  +  +    
Sbjct: 327 KTVVALICALAALKANYQVAIMAPTQPLAVQFFLQADKLLAKFKFKTSLLVSSTKKKE-- 384

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
              ++I  G+   ++GTHAL ++ +++  L  +I+DEQHRFGV+QR  L+ K   PH+LL
Sbjct: 385 SVYQKIKSGEIDCVVGTHALIEEQVEFKNLGFIIIDEQHRFGVEQRKNLSSKGKFPHLLL 444

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPR+L +       +S I EKPA R  IKT+    N+  E  +     L++  + 
Sbjct: 445 MSATPIPRSLSMVLYSKTSLSTIKEKPANRGKIKTLHFYKNKRQEAYKIAIDELNKKHQV 504

Query: 486 YWICPQIEEKKES-NFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTC 542
           Y I P IEE +   ++R+ ++    L + F     + ++HG++   +K++++  FK G  
Sbjct: 505 YVIAPLIEESEHFEDYRAAIKLHEELKDGFFKGFRVELLHGKLKPEEKDAILKDFKEGAI 564

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
             LI+TTVIEVGID   A++IIIENA+ FGL+QLHQLRGRVGR    S  IL+ +  LS 
Sbjct: 565 DCLISTTVIEVGIDSPLATVIIIENADRFGLSQLHQLRGRVGRSSFDSYAILITNNNLSD 624

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +  R+  L  T+DGF IA+ D + R  GEILG +Q G              L+   +KD
Sbjct: 625 TAKKRIEALLKTDDGFEIAQIDFQLRGSGEILGTRQHG-RDLKYTNILKDIKLINTVKKD 683

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
              +L +D          +  +L   ++ E   +I  G
Sbjct: 684 IDMLLKKD----YPLNDGLLTILKR-EWKERLSYINVG 716


>gi|120403147|ref|YP_952976.1| ATP-dependent DNA helicase RecG [Mycobacterium vanbaalenii PYR-1]
 gi|119955965|gb|ABM12970.1| ATP-dependent DNA helicase RecG [Mycobacterium vanbaalenii PYR-1]
          Length = 752

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 215/726 (29%), Positives = 349/726 (48%), Gaps = 84/726 (11%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID-RHYRPKISEISEERIVTITGYISQ 78
           GKK +  L + +           DLL Y P  + D    R +  ++     VT    I  
Sbjct: 13  GKKAADNLEEHL-----GLRTVNDLLRYFPRKYSDAMTVRGEGEDLEVGEHVTFVDVIDA 67

Query: 79  HSSFQLQK---RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR 135
               +++    R    + L D   ++T  FF    + LKN   EG K+ ++G++   +  
Sbjct: 68  AELKRVRNQPSREFLVVTLRDRRPKVTATFFN--PKYLKNTLVEGAKVMLSGEVGYYRGT 125

Query: 136 IIMVHPHYIFHNSQDVN-------------------------FPLIEAVYSLPTGLSVDL 170
           + + HP ++  NS                                   +Y     +    
Sbjct: 126 MQLTHPAFMVLNSASGKKIGTKSLTSVASTTDATGDELLAEFEKDYFPIYGATAKVQTWD 185

Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
               + + L+ L  +PE + +  +++ +  S  EA   +H    A+D +      ERL +
Sbjct: 186 IYACVRQMLAVLDPVPETLPEWFVREHNLMSEDEALRAVHLSENAEDRDRAI---ERLTF 242

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK-ILRNIPFSPTKSQESAIKDILQDMS 289
           DE +  Q  L++ R       G P    G      ++  +PF  T  Q   ++ I  ++S
Sbjct: 243 DEAVGLQWGLVVRRHSELSASGPPAKRRGDGLMAAMMAQLPFELTTGQREVLEVISAELS 302

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY----- 344
               M R+LQG+VGSGKT+V+L+AM   ++AG Q  ++AP  +LA QH   I+       
Sbjct: 303 APRPMNRMLQGEVGSGKTVVSLLAMLQMIDAGYQCALLAPTEVLAAQHALSIRSMLGPLA 362

Query: 345 ------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                   +    V ++TG+M    +R A   +A G+A I+IGTHAL QD++++  L +V
Sbjct: 363 TAGELGGADNATRVALLTGSMTAQQKRDARREVASGEAGIVIGTHALLQDTVEFDNLGMV 422

Query: 399 IVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
           +VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E P GR
Sbjct: 423 VVDEQHRFGVEQRDRLRAKAPEGITPHLLVMTATPIPRTVALTIYGDLETSILRELPRGR 482

Query: 456 KPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV------- 504
           +PI T  I   +    ++    R+   +  G++AY +  +I+E  + +            
Sbjct: 483 QPITTNTIFQTQKPAWLERAWARIAEEVKAGRQAYVVASRIDEDDKPSDEDKKDDGKAKK 542

Query: 505 ----------------ERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                           E F  L     S   + ++HGR+S  +K +VM +F+ G   +L+
Sbjct: 543 AKKATKEQGPPPVTVVEMFARLQRGLLSDLRLGLMHGRLSGDEKAAVMSAFRRGEIDVLV 602

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
            TTVIEVG+DV +A+++++ +A+ FG++QLHQLRGR+GRGE  S C+L+   P S  +  
Sbjct: 603 CTTVIEVGVDVPNATVMVVMDADRFGISQLHQLRGRIGRGEHPSLCLLVTKLPESSKAGQ 662

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKH 665
           RL  +  T DGF +A+ DL++R EG++LG  QSG P          H  ++  A++  + 
Sbjct: 663 RLKAVAGTLDGFALADLDLRERSEGDVLGYYQSGRPITLRFLSLAEHLEIILAAKELCET 722

Query: 666 ILTQDP 671
           +   DP
Sbjct: 723 VYESDP 728


>gi|269215473|ref|ZP_06159327.1| ATP-dependent DNA helicase RecG [Slackia exigua ATCC 700122]
 gi|269130960|gb|EEZ62035.1| ATP-dependent DNA helicase RecG [Slackia exigua ATCC 700122]
          Length = 723

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 200/684 (29%), Positives = 313/684 (45%), Gaps = 47/684 (6%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
              A +S   GV    +     +            DL+ ++P  +ID      I      
Sbjct: 10  AFDASVSALTGVSSGRAAAFLHL------GIETVRDLVQHYPRRYIDMTRLDTIEHAPLG 63

Query: 68  RIVTITGYISQHSSFQLQKRRPY---KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
             VTI G +  H     + RR     ++ + DGTG + + FF  K   L+    +G ++ 
Sbjct: 64  ERVTIIGEV--HEVVLKRPRRDLSLVEVTVVDGTGTLIVTFF--KQPWLQRSIRQGMRVG 119

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQDVNF-PLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           V+G+++       M  P     +         I  V+     +S  + +K+I  AL+ + 
Sbjct: 120 VSGELEFNYGYKRMKSPFLDVIDEGGPMLAGSIIPVHGATEKVSAGIMRKVIRAALASIQ 179

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
              + +   L  +    S A A   IH P+ A D       R     + LL     L   
Sbjct: 180 GCFDPLPLRLRTRYRLMSRAAALASIHFPQTADDIAQAK--RRLAYEELLLLEMHLLASA 237

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R   + +       +G  ++ +   +PFS T  Q  A+ DI   M+  + M  +L GDVG
Sbjct: 238 RSFTQGKAAHVHVFDGPFSRALSAALPFSLTDDQLRAVADIQGRMATDSAMSHLLLGDVG 297

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +GKT+VA  A AAA +A  Q ++MAP  +LA Q+   +        I   ++TG+ P A 
Sbjct: 298 TGKTIVAAFAAAAAADARAQTLMMAPTEVLASQYARALGPLFDAAGITWALLTGSTPDAD 357

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           RR  L  +  G   ++ GTHAL +  +  +   LVIVDEQ RFGV+QR  L  K   P  
Sbjct: 358 RRDMLALLESGHIDVLFGTHALIEPDVVCHDCGLVIVDEQQRFGVRQRADLLAKGVLPDA 417

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L MTATPIPRTL L   G++ +S + + P  R    T ++         + ++   ++G+
Sbjct: 418 LYMTATPIPRTLALALYGNLSLSYLKDMPENRPGRTTHVLGFRERGRAYDAVRAACAKGR 477

Query: 484 KAYWICPQI----------------------------EEKKESNFRSVVERFNSLHEHFT 515
           +A+ ICP +                            ++  E+N R+       L     
Sbjct: 478 QAFVICPLVGTKPPRDEGAHPRPRDDEADREPFIDSFDDLPENNVRAAEAEAAFLQAKVF 537

Query: 516 --SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               + ++HG+M   +KE  M  F+ G   +L+ATTV+EVG+DV +A+ +++E+AE FGL
Sbjct: 538 KEFRVGLLHGKMKPAEKEEAMARFREGGIDVLVATTVVEVGVDVPNATCMVVEDAERFGL 597

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           +QLHQLRGRVGRG       L+     S  +  RLS ++ T+DGF +AE DL  R+EG+I
Sbjct: 598 SQLHQLRGRVGRGGMRGEVYLVAATS-SDEALERLSAMEATDDGFELAERDLALRREGDI 656

Query: 634 LGIKQSGMPKFLIAQPELHDSLLE 657
           LG +Q G     +       +L+E
Sbjct: 657 LGNRQHGASALKLVNIMRDGALIE 680


>gi|313813576|gb|EFS51290.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL025PA1]
          Length = 749

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 205/718 (28%), Positives = 347/718 (48%), Gaps = 63/718 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  PL+    VG K +   S +      +     + L + P  ++       +S +  
Sbjct: 20  KELHRPLAE--AVGAKTAKAFSAL------HVGTVGEALGHLPRRYLTGTETTDLSHLVI 71

Query: 67  ERIVTITGYISQHSS--------FQLQKRRPYKILLNDGTGEITLLFFYRK--TEMLKNV 116
           +  V +   +              + + R+  +++L+DG   + + FF +       + +
Sbjct: 72  DTEVALVADVVGVEVHTNKTVTGRERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRI 131

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPLIEAVYS 161
           F         GK+ + +    +VHP ++  +               +  V    +  +Y 
Sbjct: 132 FSAHTHGIFVGKVGEFRGNPQLVHPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYP 191

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
             + L       +    L   P L + + + L Q+   PS+ EA++ IH P    + +  
Sbjct: 192 QTSKLRTWEIASVESMLLESTPELEDTLPEWLRQEADLPSLWEAYHAIHYPHSVAEADRG 251

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
           +   ERL ++E +A Q+ + + R+  ++      +  +G +       +PF+PT  Q+  
Sbjct: 252 A---ERLIWEEAIATQVTMAVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEV 308

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            + I  D+S    M R+LQG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  
Sbjct: 309 SRVIDADLSADRPMHRLLQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRT 368

Query: 341 IKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I     +               V ++TG+M  A  R AL  IA G A II+GTH+L    
Sbjct: 369 IINMLGDLASGEGLDAPEISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGR 428

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           + Y  + LV+VDEQHRFGV+QR  LT  +   PH L++TATPIPRT+ +T  GD+++S +
Sbjct: 429 VIYNDIGLVVVDEQHRFGVEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSL 488

Query: 449 TEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
            E P GR  ++T ++ +    + +    +R++     G + + +CP+I      +    R
Sbjct: 489 RELPTGRADVQTTVVDLPAHGSWLTRAWQRIREECDAGHQVFVVCPRINSDDADDVEGGR 548

Query: 502 SVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                   L     +       +  +H R+   +K+ V+D F  G  ++LI+TTVIEVG+
Sbjct: 549 PPAAAVEELAPQLATGPLAGLRVEALHSRLDSSEKDLVIDRFIKGESQVLISTTVIEVGV 608

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A++++I +A+ FG++QLHQLRGR+GRG     C+L+   P    +  RL  +  + 
Sbjct: 609 DVPNATMMVIMDADRFGVSQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASR 668

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPD 672
           DGF +AE DL QR EG +LG  Q+G      + +   H  ++  ++  A+  +T+ PD
Sbjct: 669 DGFELAELDLAQRHEGNVLGSSQAGYSSPLRLLRVLDHAEIVTASKGLAERWVTEAPD 726


>gi|314930507|gb|EFS94338.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL067PA1]
          Length = 749

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 204/717 (28%), Positives = 344/717 (47%), Gaps = 63/717 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  PL+    VG K +   S +      +     + L + P  ++       +S +  
Sbjct: 20  KELHRPLAE--AVGAKTAKAFSAL------HVGTVGEALGHLPRRYLTGTETTDLSHLVI 71

Query: 67  ERIVTITGYISQHSS--------FQLQKRRPYKILLNDGTGEITLLFFYRK--TEMLKNV 116
           +  V +   +              + + R+  +++L+DG   + + FF +       + +
Sbjct: 72  DIEVALVADVVGVEVHTNKTVTGRERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRI 131

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPLIEAVYS 161
           F         GK+ + +    +VHP ++  +               +  V    +  +Y 
Sbjct: 132 FSAHTHGIFVGKVGEFRGNPQLVHPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYP 191

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
             + L       +    L   P L + + + L Q+   PS+ EA++ IH P    + +  
Sbjct: 192 QTSKLRTWEIASVESMLLESTPELEDTLPEWLRQEADLPSLWEAYHAIHYPHSVAEADRG 251

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
           +   ERL ++E +A Q+ + + R+  ++      +  +G +       +PF+PT  Q+  
Sbjct: 252 A---ERLIWEEAIATQVTMAVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEV 308

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            + I  D+S    M R+LQG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  
Sbjct: 309 SRVIDADLSADRPMHRLLQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRT 368

Query: 341 IKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I     +               V ++TG+M  A  R AL  IA G A II+GTH+L    
Sbjct: 369 IINMLGDLASGEGLDAPEISTGVALLTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGR 428

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           + Y  + LV+VDEQHRFGV+QR  LT  +   PH L++TATPIPRT+ +T  GD+++S +
Sbjct: 429 VIYNDIGLVVVDEQHRFGVEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSL 488

Query: 449 TEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
            E P GR  ++T ++ +    + +     R++     G + + +CP+I      +    R
Sbjct: 489 RELPTGRADVQTTVVDLPAHGSWLTRAWRRIREECDAGHQVFVVCPRINSDDADDVEGGR 548

Query: 502 SVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                   L     +       +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+
Sbjct: 549 PPAAAVEELAPQLATGPLAGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGV 608

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A++++I +A+ FG++QLHQLRGR+GRG     C+L+   P    +  RL  +  + 
Sbjct: 609 DVPNATMMVIMDADRFGVSQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASR 668

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDP 671
           DGF +AE DL QR EG +LG  Q+G      + +   H  ++  ++  A+  + + P
Sbjct: 669 DGFELAELDLAQRHEGNVLGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAP 725


>gi|110801740|ref|YP_699017.1| ATP-dependent DNA helicase RecG [Clostridium perfringens SM101]
 gi|110682241|gb|ABG85611.1| ATP-dependent DNA helicase RecG [Clostridium perfringens SM101]
          Length = 564

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 208/543 (38%), Positives = 324/543 (59%), Gaps = 10/543 (1%)

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK KK+ N + +++P       ++ N   I  +Y+L  GL+  +  K+I E L  + ++ 
Sbjct: 2   GKFKKVNNTLEVINP---LIPCKEANKSEILPIYTLKNGLTNKILVKLINEILKNM-IIK 57

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E + +++++K    S+ +A   IH P    + +       RL + EL    + +++M+  
Sbjct: 58  ENLPEEIVKKYKLISLDKAIRNIHFPVGRGELQSAIN---RLKFQELFTYSLKIIMMKAH 114

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            KKE          + +++  ++P++ T +Q   +++IL D  +   M R++QGDVGSGK
Sbjct: 115 IKKENSGISFKMSPLLKELKESLPYTLTNAQSRTLREILLDQKRNIAMNRLVQGDVGSGK 174

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVALI+M      G Q V+MAP  ILA QHY   KKY     + +E++TG+  +  +++
Sbjct: 175 TLVALISMFNVYMNGYQTVLMAPTEILANQHYAEAKKYLDKFGVDIELLTGSTKEKEKKR 234

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E+IA G+  ++IGTHAL QD ++   L LV+ DEQHRFGV+QR +L  K     VL+M
Sbjct: 235 IKEKIASGKEIMLIGTHALIQDDVELNNLGLVVTDEQHRFGVEQRSRLINKNKRADVLVM 294

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L    D+DIS I E P GRKPI T+++ +N+  +        + +G++ Y
Sbjct: 295 TATPIPRTLSLYLYSDLDISIIDELPPGRKPIDTMLVDMNQRMKAYNFALKEVEKGRQFY 354

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            + P IEE ++ N  SV + +  L         I I+HG+M+  DK+ ++++FKNG  K 
Sbjct: 355 IVSPLIEENEKLNLNSVEKIYEELKNGIFKDVRIEILHGKMAGKDKDKIINTFKNGEIKG 414

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           +I+TTVIEVG++V +++++IIENAE FGLAQLHQLRGRVGRGE  S CIL+ +       
Sbjct: 415 IISTTVIEVGVNVPNSTMMIIENAERFGLAQLHQLRGRVGRGEHKSYCILIANTKNDIT- 473

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R+ ++  + DGF IAEEDLK R  GE+ G++Q G   F++A      ++L+ A  +AK
Sbjct: 474 RRRMEIMTESSDGFYIAEEDLKLRGAGEVFGMRQHGDEGFILANVVDDINILKCANHEAK 533

Query: 665 HIL 667
            I+
Sbjct: 534 LIV 536


>gi|126434504|ref|YP_001070195.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. JLS]
 gi|126234304|gb|ABN97704.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. JLS]
          Length = 741

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 208/718 (28%), Positives = 359/718 (50%), Gaps = 75/718 (10%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID----RHYRPKISEISEERIVTITG 74
           +G K +  L +             DLL ++P  + D    R     + ++ E   VT   
Sbjct: 12  IGGKSAALLEEH-----FGICTVNDLLRHYPRKYSDGMSVRGEGESL-DLEEGEHVTFVD 65

Query: 75  YISQHSSFQL------QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            I++    Q+      + R+  ++ L      +T  FF    + + +    G ++ ++G+
Sbjct: 66  VITKAEPGQMKPIPGKRPRKYLRVTLGRRNPVVTATFFN--ADWMIDKLPVGTRLMLSGE 123

Query: 129 IKKLKNRIIMVHPHYIFHNS---------------------QDVNFPLIE----AVYSLP 163
           +K  +N + + HP ++   S                      D      E     +Y   
Sbjct: 124 VKYFRNTLQLSHPAFLVLESSATRKIGTKSLKTIAASSGATGDELLAAFERDFFPIYPAS 183

Query: 164 TGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP 223
             +        + + L  L  +PE + + +++++   S   A   I     A++      
Sbjct: 184 AKVQSWDIYACVRQVLDVLDPVPEPLPESVVRERGLISEDAALRGI---HLAENERDRDR 240

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIK 282
           ARERL +DE +  Q  L+  R     E G P  + E  +   +   +PF  T  Q   ++
Sbjct: 241 ARERLTFDEAVGLQWGLVSRRYGELTEAGPPAPLREDGLVAGMRERLPFELTNGQREVLE 300

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
            +  +++    M R+LQG+VGSGKT++A++AM   V+AG Q  ++AP  +LA QH   I+
Sbjct: 301 VLSGELAGTRPMNRMLQGEVGSGKTVIAVLAMLQMVDAGYQCAMLAPTEVLAAQHDRSIR 360

Query: 343 KY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +               +   V ++TG+M    +R+  + +A GQA I+IGTHAL QDS++
Sbjct: 361 QILGPLAMAGQLGGAESATRVALLTGSMTPQQKRQVRDEVATGQAGIVIGTHALLQDSVE 420

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKI 448
           +  L +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ S +
Sbjct: 421 FDNLGMVVVDEQHRFGVEQRDRLRAKARGGITPHLLVMTATPIPRTVALTVYGDLETSTL 480

Query: 449 TEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV- 503
            E P GR+PI +  I + +    +D    R+   + +G++AY +  +I+E  +       
Sbjct: 481 RELPRGRQPITSNTIFVTQHPKWLDRAWARIVEEVRDGRQAYVVASRIDESDKPQKEEQG 540

Query: 504 ------VERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                 V  ++ L     +   + ++HGR+S  +K++VM +F+ G   +L+ TTVIEVG+
Sbjct: 541 PPPVTVVALYDILKSGPLAGLRLGLMHGRLSGDEKDAVMTAFRAGEIDVLVCTTVIEVGV 600

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A+++++ +A+ FG++QLHQLRGR+GRG   S C+L    P +  +  RL  +  T 
Sbjct: 601 DVPNATVMVVMDADRFGISQLHQLRGRIGRGSHPSLCLLATRLPETSKAGARLKAVAGTL 660

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           DGF +A+ DL++R+EG++LG+ QSG +          H  ++  AR+  + +   +PD
Sbjct: 661 DGFALADLDLRERREGDVLGMHQSGRLNSLHFLSLSDHLDVILAARELCETLYENEPD 718


>gi|71066639|ref|YP_265366.1| ATP-dependent DNA helicase RecG [Psychrobacter arcticus 273-4]
 gi|71039624|gb|AAZ19932.1| probable DNA helicase [Psychrobacter arcticus 273-4]
          Length = 808

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 213/489 (43%), Positives = 303/489 (61%), Gaps = 16/489 (3%)

Query: 197 KSFPSIAEAFNIIHNPRKAKD-----------FEWTSPARERLAYDELLAGQIALLLMRK 245
            +  +I EA  ++H P    D              T  A +RL  +EL A Q++LL  R+
Sbjct: 299 YNL-TIFEALVLLHTPPTYTDTGRQYQLLTQLSARTHAACQRLIIEELTAHQLSLLYRRQ 357

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
           Q  K       V+  +A K+   +PF  T +Q+  ++DI  DM+    MLR++QGDVG+G
Sbjct: 358 QLHKHKAPKCAVQSPLADKLFGALPFDLTGAQKRVMQDITADMATSIPMLRLVQGDVGAG 417

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KTLVA  A   A+++G Q  +MAP  ILA+QH    K + +   I V  + G      RR
Sbjct: 418 KTLVAAGAAGYALDSGWQVAVMAPTEILAEQHLVNFKNWFEPLGIGVGWLAGKQTAKQRR 477

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPH 422
           +ALE ++     I++GTHALFQ+ +++ KL LVI+DEQHRFGV+QR+ LT K    + PH
Sbjct: 478 EALEAVSENTVQIVVGTHALFQEQVKFAKLGLVIIDEQHRFGVEQRMALTNKGVAGSTPH 537

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L+MTATPIPRTL ++  GD+D S I E P GR PI TV I  NR ++VIER+ V    G
Sbjct: 538 QLIMTATPIPRTLAMSVYGDMDTSIIDELPPGRTPITTVTIDRNRRNDVIERIAVNCEAG 597

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           ++AYW+C  +EE    + ++    +  L E     I ++HG+M   DK+++M +FK G  
Sbjct: 598 RQAYWVCSLVEESSVLDAQAAEATYEDLSERLDIRIGLVHGKMKGADKQAIMQAFKAGQL 657

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LLIATTVIEVG+DV +AS+++IENAE  GL+QLHQLRGRVGRG   S C+LLY  PLS+
Sbjct: 658 DLLIATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRVGRGSTKSYCVLLYQKPLSE 717

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               RL+VL+++ DGF+IA++DL+ R  GE+LG +Q+G   + +A     + L  IA++ 
Sbjct: 718 TGTERLNVLRDSTDGFVIAQKDLELRGPGELLGKRQTGNVGYYLADLIRDEQLFAIAQRL 777

Query: 663 AKHILTQDP 671
           AKH++  DP
Sbjct: 778 AKHLIA-DP 785



 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 12/176 (6%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
            L  P++   GVG K    L+++         R  DLL + P  + DR     I ++   
Sbjct: 32  ALDLPVTALAGVGPKVVEQLTQL------GINRIFDLLLHLPRDYEDRSRLVSIGDVGHG 85

Query: 68  RIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
           +   ITG +    +     R    ++++D TG I+L FF +    L      G  + + G
Sbjct: 86  QAALITGRVVHVDT----NRSGMTVIVDDDTGTISLRFF-KVYRGLAQTMSVGTHLQLFG 140

Query: 128 KIKKLKNRIIMVHPHY-IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
           ++K  +    + HP Y I  +++ +    +E +Y    GL  +  + +I  AL  +
Sbjct: 141 EVKVSRYGKQIHHPEYQIISSNEAIVNTGLEPIYPSVKGLHQNKLRTLIKLALQTV 196


>gi|295133061|ref|YP_003583737.1| ATP-dependent DNA helicase RecG [Zunongwangia profunda SM-A87]
 gi|294981076|gb|ADF51541.1| ATP-dependent DNA helicase RecG [Zunongwangia profunda SM-A87]
          Length = 528

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 206/500 (41%), Positives = 316/500 (63%), Gaps = 7/500 (1%)

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + + +++  +    S AEA   IH P+ A   E  + A+ RL ++EL   Q+ LLL  + 
Sbjct: 15  DTLNEEIRNEFRLISKAEALFNIHFPKNA---ELLAKAQFRLKFEELFYIQLQLLLKNQL 71

Query: 247 FKKEIG-IPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            K++I        G+      + ++PF  T +Q+  IK+I  D+    +M R+LQGDVGS
Sbjct: 72  RKQKIKGFVFGEIGEYFSGFYKNHLPFDLTGAQKRVIKEIRADLGTGAQMNRLLQGDVGS 131

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VAL++M  A++   QA +MAP  ILA QHY+ + +  +  ++ + ++TG+  +AHR
Sbjct: 132 GKTIVALMSMLIAIDNNFQACLMAPTEILAIQHYQGLVELCEKMELSIYLLTGSSKKAHR 191

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-TQKATAPHV 423
           R+  E++ +G+  I+IGTHAL +D ++++ L L I+DEQHRFGV QR KL  +    PH+
Sbjct: 192 RELHEKLENGEIDILIGTHALLEDKVKFHNLGLAIIDEQHRFGVAQRAKLWRKNKIPPHI 251

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L+MTATPIPRTL ++  GD+DIS I E P GRKPI+TV    +   +V   LK  + +G+
Sbjct: 252 LVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPIRTVHRFDSNRLKVFRFLKEEIDKGR 311

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + Y + P I+E ++ +++ +++ + S+   F    I+I+HG+M   DK+  M  F  G  
Sbjct: 312 QVYVVYPLIQESEKMDYKDLMDGYESIAREFPDFQISIVHGQMKPEDKDYEMQRFAEGKT 371

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++++ATTVIEVG++V +AS+++IE+AE FGL+QLHQLRGRVGRG E S CIL+    LS 
Sbjct: 372 EIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGRGAEQSYCILMTGHKLSN 431

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +S TRL  +  T DGF IAE DLK R  G+I+G +QSG+    IA     + LL+ AR  
Sbjct: 432 DSKTRLETMTATNDGFQIAEVDLKLRGPGDIMGTQQSGVLNLKIADIVKDNDLLKTARHI 491

Query: 663 AKHILTQDPDLTSVRGQSIR 682
           A+ +L +DP L   + + +R
Sbjct: 492 AQKVLKEDPKLALEKNKVLR 511


>gi|108798904|ref|YP_639101.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. MCS]
 gi|119868019|ref|YP_937971.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. KMS]
 gi|108769323|gb|ABG08045.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. MCS]
 gi|119694108|gb|ABL91181.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. KMS]
          Length = 741

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 208/718 (28%), Positives = 359/718 (50%), Gaps = 75/718 (10%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFID----RHYRPKISEISEERIVTITG 74
           +G K +  L +             DLL ++P  + D    R     + ++ E   VT   
Sbjct: 12  IGGKSAALLEEH-----FGIRTVNDLLRHYPRKYSDGMSVRGEGESL-DLEEGEHVTFVD 65

Query: 75  YISQHSSFQL------QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
            I++    Q+      + R+  ++ L      +T  FF    + + +    G ++ ++G+
Sbjct: 66  VITKAEPGQMKPIPGKRPRKYLRVTLGRRNPVVTATFFN--ADWMIDKLPVGTRLMLSGE 123

Query: 129 IKKLKNRIIMVHPHYIFHNS---------------------QDVNFPLIE----AVYSLP 163
           +K  +N + + HP ++   S                      D      E     +Y   
Sbjct: 124 VKYFRNTLQLSHPAFLVLESSATRKIGTKSLKTIAASSGATGDDLLAAFERDFFPIYPAS 183

Query: 164 TGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP 223
             +        + + L  L  +PE + + +++++   S   A   I     A++      
Sbjct: 184 AKVQSWDIYACVRQVLDVLDPVPEPLPESVVRERGLISEDAALRGI---HLAENERDRDR 240

Query: 224 ARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIK 282
           ARERL +DE +  Q  L+  R     E G P  + E  +   +   +PF  T  Q   ++
Sbjct: 241 ARERLTFDEAVGLQWGLVSRRYGELTEAGPPAPLREDGLVAGMRERLPFELTNGQREVLE 300

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
            +  +++    M R+LQG+VGSGKT++A++AM   V+AG Q  ++AP  +LA QH   I+
Sbjct: 301 VLSAELAGTRPMNRMLQGEVGSGKTVIAVLAMLQMVDAGYQCAMLAPTEVLAAQHDRSIR 360

Query: 343 KY-----------TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +               +   V ++TG+M    +R+  + +A GQA I+IGTHAL QDS++
Sbjct: 361 QILGPLAMAGQLGGAESATRVALLTGSMTPQQKRQVRDEVATGQAGIVIGTHALLQDSVE 420

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKI 448
           +  L +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ S +
Sbjct: 421 FDNLGMVVVDEQHRFGVEQRDRLRAKARGGITPHLLVMTATPIPRTVALTVYGDLETSTL 480

Query: 449 TEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV- 503
            E P GR+PI +  I + +    +D    R+   + +G++AY +  +I+E  +       
Sbjct: 481 RELPRGRQPITSNTIFVTQHPKWLDRAWARIVEEVRDGRQAYVVASRIDESDKPQKEEQG 540

Query: 504 ------VERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                 V  ++ L     +   + ++HGR+S  +K++VM +F+ G   +L+ TTVIEVG+
Sbjct: 541 PPPVTVVALYDILKSGPLAGLRLGLMHGRLSGDEKDAVMTAFRAGEIDVLVCTTVIEVGV 600

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A+++++ +A+ FG++QLHQLRGR+GRG   S C+L    P +  +  RL  +  T 
Sbjct: 601 DVPNATVMVVMDADRFGISQLHQLRGRIGRGSYPSLCLLATRLPETSKAGARLKAVAGTL 660

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           DGF +A+ DL++R+EG++LG+ QSG +          H  ++  AR+  + +   +PD
Sbjct: 661 DGFALADLDLRERREGDVLGMHQSGRLNSLHFLSLSDHLDVILAARELCETLYENEPD 718


>gi|121638855|ref|YP_979079.1| ATP-dependent DNA helicase RecG [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224991347|ref|YP_002646036.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|121494503|emb|CAL72984.1| Probable atp-dependent dna helicase recG [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224774462|dbj|BAH27268.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
          Length = 737

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 344/701 (49%), Gaps = 67/701 (9%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYISQHSSFQLQK---RRPY 90
                  DLL ++P S+++   R  I +        +TI   I+   SF ++K   R+  
Sbjct: 24  FGMRTVDDLLRHYPRSYVEGAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNRKCL 83

Query: 91  KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150
           +I +  G  ++T  FF    + +     +  K+ ++G++   K  + + HP ++  +S D
Sbjct: 84  RITVGGGRNKVTATFFN--ADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSPD 141

Query: 151 VNFPLIE--------------------------AVYSLPTGLSVDLFKKIIVEALSRLPV 184
                                             +Y   T +      K + + L  L  
Sbjct: 142 GKNHGTRSLKSIADASKAISGELVVEEFERRFFPIYPASTKVQSWDIFKCVRQVLDVLDR 201

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + + +  +L  K       EA   I     A+       ARERL +DE +  Q AL+  R
Sbjct: 202 VDDPLPAELRAKHGLIPEDEALRAI---HLAESQSLRERARERLTFDEAVGLQWALVARR 258

Query: 245 KQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
                E G     +    A ++LR +PF  T  Q   +  +   ++    + R+LQG+VG
Sbjct: 259 HGELSESGPSAAWKSNGLAAELLRRLPFELTAGQREVLDVLSDGLAANRPLNRLLQGEVG 318

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-----------IV 352
           SGKT+VA++AM   V+AG Q  ++AP  +LA QH   I+       +            V
Sbjct: 319 SGKTIVAVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRV 378

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+M    +++    IA GQ  I+IGTHAL Q+++ ++ L +V+VDEQHRFGV+QR 
Sbjct: 379 ALLTGSMTAGQKKQVRAEIASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRD 438

Query: 413 KLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467
           +L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E P GR+PI T +I +    
Sbjct: 439 QLRAKAPAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNVIFVKDKP 498

Query: 468 --IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR---SVVERFNSLHEHFTS------ 516
             +D    R+    + G++AY + P+I+E  +++ +           L     S      
Sbjct: 499 AWLDRAWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGVRPSATAEGLFSRLRSAELAEL 558

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A++HGR+S  DK++ M +F+ G   +L+ TTVIEVG+DV +A+++++ +A+ FG++QL
Sbjct: 559 RLALMHGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQL 618

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGR+GRGE  S C+L    P    +  RL  +  T DGF +A+ DLK+RKEG++LG 
Sbjct: 619 HQLRGRIGRGEHPSVCLLASWVPPDTPAGQRLRAVAGTMDGFALADLDLKERKEGDVLGR 678

Query: 637 KQSGM-PKFLIAQPELHDSLLEIARKDAKHILTQ--DPDLT 674
            QSG      +     H+  +  AR           DP L 
Sbjct: 679 NQSGKAITLRLLSLAEHEEYIVAARDFCIEAYKNPTDPALA 719


>gi|296140527|ref|YP_003647770.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
 gi|296028661|gb|ADG79431.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
           DSM 20162]
          Length = 778

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 226/761 (29%), Positives = 362/761 (47%), Gaps = 111/761 (14%)

Query: 36  ANETRFIDLLFYHPSSFI-----DRHYRPKISEISEERIVTITGYISQHSSFQL--QKRR 88
                  DLL + P  +      D   R    E      V + G ++  +  +   + ++
Sbjct: 29  LGLATVGDLLRHFPFRYEGGASIDEGTRAT--EPKIGDDVVVIGTVTAVTPPRPHHRGKK 86

Query: 89  PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS 148
            +K+ + +      + FF      L      GR++ + G++ +   ++ + HP ++    
Sbjct: 87  MFKVQVVNKVRAYDVTFFN----YLPKPIQPGRQLLLIGRLGEFNRKLQLTHPDWLVLPD 142

Query: 149 QDVN----------------------------FPLIEAVYSLPTGLSVDLFKKIIVEALS 180
            D++                               +  +Y     +   L   I+   L+
Sbjct: 143 DDMSSTEALAANETGATKAGSKRLKLANLALLTGPVVPIYHGTKNMPTWLIASIVDLVLT 202

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           RL  +PE +              EA  + H P++  + +     R RL++DE +A + A 
Sbjct: 203 RLAPVPESLPDGFRSLHGLLGFDEALRVAHFPKRRSEADAA---RRRLSFDEAVAIETA- 258

Query: 241 LLMRKQFKKEIGIP--INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L  R      +  P    V+G +   +   +PF  T  QE  + +IL D+SQ + M R+L
Sbjct: 259 LARRAHDVGTVPAPQLAAVDGPLQAGLRERLPFQLTAGQEEVLAEILGDLSQGHPMTRLL 318

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ--------- 349
           QG+VGSGKTLVAL+AM AAV++G QAV++AP  +LA QH   I K   +           
Sbjct: 319 QGEVGSGKTLVALLAMLAAVDSGYQAVLLAPTEVLATQHMLSITKMLGDLGEAGQLGAAD 378

Query: 350 --IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
               V ++TG+M    RR AL RI  G+A I+IGTHAL +D++ +++L LV+VDEQHRFG
Sbjct: 379 AATTVTLLTGSMNTKARRAALLRIVSGEAGIVIGTHALLEDTVDFFRLGLVVVDEQHRFG 438

Query: 408 VQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           V+QR +L +K      PH+L+MTATPIPRT+ L   GD+  S + E P GR+PI+T ++P
Sbjct: 439 VEQRDRLRRKGPDDMTPHLLVMTATPIPRTVALAQFGDMSTSVLRELPRGRQPIQTSVVP 498

Query: 465 INR---IDEVIERLKVVLSEGKKAYWICPQI----------------------------- 492
             R   ID    R+   +  G++ Y +CP+I                             
Sbjct: 499 EGRPGWIDRAWARVDEEVRAGRQVYVVCPRIGDDPSGEQAKTSFTDEDYQFEQVAAPVRR 558

Query: 493 ------------EEKKESNFRSVVERFNSL--HEHFTSSIAIIHGRMSDIDKESVMDSFK 538
                        E ++    S ++ ++ L   E     IA++HGR+   +K SVM  F 
Sbjct: 559 EKDRGDAGGEDAAESEQPKMTSAIDMYDQLVGSELGQHRIALLHGRLPAEEKASVMAEFA 618

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTVIEVG+DV +A+ +++ +AE FG++QLHQLRGRVGRG     C+L+   
Sbjct: 619 AGEIDVLVATTVIEVGVDVANATTMVVMDAERFGISQLHQLRGRVGRGGLPGLCLLVTDT 678

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLE 657
           P S  +  RL  +  T DGF +A+ DL+ R  G+ILG+ QSG+  +           +L+
Sbjct: 679 P-SARTMERLESVAGTVDGFALAQLDLEHRGFGDILGVDQSGLARRLSFLDLANDGDVLD 737

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
            AR  A  ++ +DP+L      ++R +  +        ++ 
Sbjct: 738 AARAFAFEVIDEDPELEG--HGALREMNAVILGGSREDYLD 776


>gi|15610110|ref|NP_217489.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis H37Rv]
 gi|15842526|ref|NP_337563.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis
           CDC1551]
 gi|31794150|ref|NP_856643.1| ATP-dependent DNA helicase RecG [Mycobacterium bovis AF2122/97]
 gi|148662822|ref|YP_001284345.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis H37Ra]
 gi|148824163|ref|YP_001288917.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis F11]
 gi|215404949|ref|ZP_03417130.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           02_1987]
 gi|215412817|ref|ZP_03421529.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           94_M4241A]
 gi|215428424|ref|ZP_03426343.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T92]
 gi|215431923|ref|ZP_03429842.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis EAS054]
 gi|215447241|ref|ZP_03433993.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T85]
 gi|253797935|ref|YP_003030936.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN
           1435]
 gi|254233059|ref|ZP_04926386.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis C]
 gi|254365610|ref|ZP_04981655.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254552051|ref|ZP_05142498.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187997|ref|ZP_05765471.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis CPHL_A]
 gi|260206297|ref|ZP_05773788.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis K85]
 gi|289448645|ref|ZP_06438389.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis CPHL_A]
 gi|289553237|ref|ZP_06442447.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN
           605]
 gi|289575680|ref|ZP_06455907.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis K85]
 gi|289746772|ref|ZP_06506150.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           02_1987]
 gi|289751650|ref|ZP_06511028.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T92]
 gi|289755089|ref|ZP_06514467.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis EAS054]
 gi|289759098|ref|ZP_06518476.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T85]
 gi|294993940|ref|ZP_06799631.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis 210]
 gi|297635597|ref|ZP_06953377.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis KZN
           4207]
 gi|297732595|ref|ZP_06961713.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis KZN
           R506]
 gi|298526443|ref|ZP_07013852.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           94_M4241A]
 gi|306777265|ref|ZP_07415602.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu001]
 gi|306781176|ref|ZP_07419513.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu002]
 gi|306785814|ref|ZP_07424136.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu003]
 gi|306789854|ref|ZP_07428176.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu004]
 gi|306794666|ref|ZP_07432968.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu005]
 gi|306798909|ref|ZP_07437211.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu006]
 gi|306804754|ref|ZP_07441422.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu008]
 gi|306808948|ref|ZP_07445616.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu007]
 gi|306969046|ref|ZP_07481707.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu009]
 gi|306973383|ref|ZP_07486044.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu010]
 gi|307081091|ref|ZP_07490261.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu011]
 gi|307085693|ref|ZP_07494806.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu012]
 gi|313659927|ref|ZP_07816807.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis KZN
           V2475]
 gi|54039023|sp|P64323|RECG_MYCBO RecName: Full=ATP-dependent DNA helicase recG
 gi|54041650|sp|P64322|RECG_MYCTU RecName: Full=ATP-dependent DNA helicase recG
 gi|1694858|emb|CAB05438.1| PROBABLE ATP-DEPENDENT DNA HELICASE RECG [Mycobacterium
           tuberculosis H37Rv]
 gi|13882836|gb|AAK47377.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis
           CDC1551]
 gi|31619745|emb|CAD96685.1| PROBABLE ATP-DEPENDENT DNA HELICASE RECG [Mycobacterium bovis
           AF2122/97]
 gi|124602118|gb|EAY61128.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis C]
 gi|134151123|gb|EBA43168.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506974|gb|ABQ74783.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis H37Ra]
 gi|148722690|gb|ABR07315.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis F11]
 gi|253319438|gb|ACT24041.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN
           1435]
 gi|289421603|gb|EFD18804.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis CPHL_A]
 gi|289437869|gb|EFD20362.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN
           605]
 gi|289540111|gb|EFD44689.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis K85]
 gi|289687300|gb|EFD54788.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           02_1987]
 gi|289692237|gb|EFD59666.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T92]
 gi|289695676|gb|EFD63105.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis EAS054]
 gi|289714662|gb|EFD78674.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T85]
 gi|298496237|gb|EFI31531.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214410|gb|EFO73809.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu001]
 gi|308326011|gb|EFP14862.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu002]
 gi|308329589|gb|EFP18440.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu003]
 gi|308333680|gb|EFP22531.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu004]
 gi|308337078|gb|EFP25929.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu005]
 gi|308340890|gb|EFP29741.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu006]
 gi|308344727|gb|EFP33578.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu007]
 gi|308348707|gb|EFP37558.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu008]
 gi|308353403|gb|EFP42254.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu009]
 gi|308357279|gb|EFP46130.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu010]
 gi|308361292|gb|EFP50143.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu011]
 gi|308364809|gb|EFP53660.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu012]
 gi|323718446|gb|EGB27619.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904587|gb|EGE51520.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis W-148]
 gi|328457710|gb|AEB03133.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN
           4207]
          Length = 737

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 344/701 (49%), Gaps = 67/701 (9%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYISQHSSFQLQK---RRPY 90
                  DLL ++P S+++   R  I +        +TI   I+   SF ++K   R+  
Sbjct: 24  FGMRTVDDLLRHYPRSYVEGAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNRKCL 83

Query: 91  KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150
           +I +  G  ++T  FF    + +     +  K+ ++G++   K  + + HP ++  +S D
Sbjct: 84  RITVGGGRNKVTATFFN--ADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSPD 141

Query: 151 VNFPLIE--------------------------AVYSLPTGLSVDLFKKIIVEALSRLPV 184
                                             +Y   T +      K + + L  L  
Sbjct: 142 GKNHGTRSLKSIADASKAISGELVVEEFERRFFPIYPASTKVQSWDIFKCVRQVLDVLDR 201

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + + +  +L  K       EA   I     A+       ARERL +DE +  Q AL+  R
Sbjct: 202 VDDPLPAELRAKHGLIPEDEALRAI---HLAESQSLRERARERLTFDEAVGLQWALVARR 258

Query: 245 KQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
                E G     +    A ++LR +PF  T  Q   +  +   ++    + R+LQG+VG
Sbjct: 259 HGELSESGPSAAWKSNGLAAELLRRLPFELTAGQREVLDVLSDGLAANRPLNRLLQGEVG 318

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-----------IV 352
           SGKT+VA++AM   V+AG Q  ++AP  +LA QH   I+       +            V
Sbjct: 319 SGKTIVAVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRV 378

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+M    +++    IA GQ  I+IGTHAL Q+++ ++ L +V+VDEQHRFGV+QR 
Sbjct: 379 ALLTGSMTAGQKKQVRAEIASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRD 438

Query: 413 KLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467
           +L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E P GR+PI T +I +    
Sbjct: 439 QLRAKAPAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNVIFVKDKP 498

Query: 468 --IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR---SVVERFNSLHEHFTS------ 516
             +D    R+    + G++AY + P+I+E  +++ +           L     S      
Sbjct: 499 AWLDRAWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGVRPSATAEGLFSRLRSAELAEL 558

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A++HGR+S  DK++ M +F+ G   +L+ TTVIEVG+DV +A+++++ +A+ FG++QL
Sbjct: 559 RLALMHGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQL 618

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGR+GRGE  S C+L    P    +  RL  +  T DGF +A+ DLK+RKEG++LG 
Sbjct: 619 HQLRGRIGRGEHPSVCLLASWVPPDTPAGQRLRAVAGTMDGFALADLDLKERKEGDVLGR 678

Query: 637 KQSGM-PKFLIAQPELHDSLLEIARKDAKHILTQ--DPDLT 674
            QSG      +     H+  +  AR           DP L 
Sbjct: 679 NQSGKAITLRLLSLAEHEEYIVAARDFCIEAYKNPTDPALA 719


>gi|295396026|ref|ZP_06806210.1| DNA helicase RecG [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971114|gb|EFG47005.1| DNA helicase RecG [Brevibacterium mcbrellneri ATCC 49030]
          Length = 737

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 201/710 (28%), Positives = 330/710 (46%), Gaps = 69/710 (9%)

Query: 35  NANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ--KRRPYKI 92
           N   +    +L + P +++       + E+  +    + G +      +L+  KR   K+
Sbjct: 24  NLGLSTVDQVLRHVPRTYLFPGELTPMEELEPDTTAVVLGKVLSVDLIRLRDRKRSLTKV 83

Query: 93  LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN----- 147
            L      + L FF      L      G+ + V+GK+   +    +  P  +  N     
Sbjct: 84  KLGGRYTAVHLTFFN--MPWLAKNLELGQNLAVSGKVVDTQYGRQINQPRILDSNLELDD 141

Query: 148 ----------SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQ 195
                      Q++       +YS+     +    ++I   L RLP+    + + + +  
Sbjct: 142 GEWGKGSVSMHQEMQMTKPMPIYSVKGKAKLSTVTRVIHRMLDRLPLEAFEDTMPQHVRS 201

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255
           +    S  EA   IH PR     +     RE  A++E  A Q  +L  ++  +KE    +
Sbjct: 202 EMGLYSYKEALEGIHRPRDKAQLQQA---REWFAFEEAFALQSYMLSNKQVHEKEAAPVL 258

Query: 256 NVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
                    +  ++  F  T+SQ+ A  +I +D+ +   M R+L GDVGSGKTLVAL AM
Sbjct: 259 AGAAMGKLDQFDQHQTFELTRSQKQAGTEISRDLVRSTPMNRLLHGDVGSGKTLVALRAM 318

Query: 315 AAAVEAGGQAVIMAPIGILA-------QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             AV++G QA ++AP  ILA       +     +        + +E++TG+M    R++ 
Sbjct: 319 LQAVDSGYQAALLAPTEILATQHVGSLRSLLGELASDGFTDGVRIELLTGSMSGRERKRV 378

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--ATAPHVLL 425
              +A G   I++GTH L  D+  + KL LV++DEQHRFGV+QR +L +K     PH L+
Sbjct: 379 ATELAAGIVDIVVGTHTLLSDTTIFDKLGLVVIDEQHRFGVEQREQLREKGGGKVPHTLV 438

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSE 481
           MTATPIPRT+ LT   D+D+S + E P G K + T ++P+       + V E +   +  
Sbjct: 439 MTATPIPRTVALTVYSDLDVSTLRELPGGPKQVSTHVVPMYEKPRWFNRVWEVVSEQVQS 498

Query: 482 GKKAYWICPQIEEKKESNFRSVV------------------------------ERFNSLH 511
           G + + +  +I+ +++ +                                   ++  SL 
Sbjct: 499 GHQTFVVTSRIDSEEDPDATDEGRSSGAHGGVAGETGGSDPGRPRLLGVEELADKLRSLP 558

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E     I  +HG+     KE+ M  FK+    +L+ATTVIEVG+DV +A ++++ +A+ F
Sbjct: 559 ELKDVRIETLHGKSEQDVKETAMQRFKDHEFDVLVATTVIEVGVDVHNARVMVVFDADRF 618

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           G+AQLHQLRGRVGR  + + C  +        S  RL  + +T DGF +AE DLK RKEG
Sbjct: 619 GVAQLHQLRGRVGRDGKPAMCFFVTQNREDSESRERLEYVASTTDGFALAEYDLKTRKEG 678

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           ++LG  Q G  +         ++L+  AR  A+  L  DP L      ++
Sbjct: 679 DVLGTSQWGAARLRFVSI-KDENLIMTARNAAQGALQDDPQLAQRSALAL 727


>gi|145295467|ref|YP_001138288.1| RecG-like helicase [Corynebacterium glutamicum R]
 gi|140845387|dbj|BAF54386.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 707

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 220/673 (32%), Positives = 343/673 (50%), Gaps = 53/673 (7%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILL 94
              T   +LL +H   +        I + +E  +VTI G ++    S+    +  YK+ +
Sbjct: 26  LGYTTAEELLRHHVRKYSHHGSGVGIGDATEGDLVTIVGQVAFAKQSYTQSGKMLYKVTV 85

Query: 95  NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP 154
              T  I + FF    + +  +  EG +   TGK+K  +N   + HP +I          
Sbjct: 86  LTETERIGISFF--GAKHIPRLLPEGTRALFTGKVKFFRNEPQLSHPEFIVIPDPGSGRR 143

Query: 155 L--------------------------IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           L                             +Y+    ++       +   L  +PV+ E 
Sbjct: 144 LTATGGMKSLAAYGDVEEVALRLVDREYIPIYAGTATMTTWRIMAAVQRVLETMPVIKEP 203

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +    +  +  PS  EA   IH+P      E  S    RL Y+E L+    + + R   K
Sbjct: 204 LS---VVPEGMPSFDEAIRGIHDPG----HESPSTFINRLKYNEALSLATVMAIRRADTK 256

Query: 249 KEIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
                P+    K     ++  + F  T  Q+  I++I  D+ Q+  M R+LQG+VGSGKT
Sbjct: 257 NRKAPPMPRALKGHQHMLIDALNFQLTAGQKQVIREISADIEQRVPMSRLLQGEVGSGKT 316

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRR 365
           +V+LIAM  A+++G Q  ++AP  +LA QH   + K   +    I V ++TG+M    ++
Sbjct: 317 IVSLIAMLQAIDSGRQCAMLAPTEVLATQHARSLSKTLDDAGLDINVVLLTGSMSTGAKK 376

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APH 422
           +AL  I  G A I++GTHAL QD+++++ L LV+VDEQHRFGV+QR +L  K      PH
Sbjct: 377 EALLEIISGDADIVVGTHALIQDTVEFFDLGLVVVDEQHRFGVEQRDQLRTKGREGLTPH 436

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVL 479
           +L+MTATPIPRT+ +T  GD+ +S + E P GR+PI+T +IP ++   +    ER+   +
Sbjct: 437 LLVMTATPIPRTIAMTVFGDLAVSTLRELPGGRRPIQTSVIPDHKPGWVKRGWERIGEEV 496

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSF 537
             G++AY +CP+IE         V+E    L E      ++ ++HGRM    K+SVM  F
Sbjct: 497 LAGRQAYVVCPRIE-----GEGGVLEIHAYLSEQVYPGLNVGMLHGRMDTDLKDSVMQEF 551

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G   +L+ATTVIEVGIDV +A++++I  AE FG++Q+HQLRGRVGRG+  S C+L   
Sbjct: 552 AQGEIDILVATTVIEVGIDVANATVMLIREAERFGVSQIHQLRGRVGRGQHDSLCLLHTT 611

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLL 656
                    RL+ +  T DGF ++E DL+ R+EG++LG +QSG   K           ++
Sbjct: 612 FDEDSPQGQRLAAISTTTDGFQLSELDLQVRQEGDVLGTRQSGSDTKLRHLSFISDQKII 671

Query: 657 EIARKDAKHILTQ 669
           E A  DA  ++  
Sbjct: 672 ERALIDATELVAA 684


>gi|160915456|ref|ZP_02077667.1| hypothetical protein EUBDOL_01464 [Eubacterium dolichum DSM 3991]
 gi|158432576|gb|EDP10865.1| hypothetical protein EUBDOL_01464 [Eubacterium dolichum DSM 3991]
          Length = 550

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 195/545 (35%), Positives = 311/545 (57%), Gaps = 13/545 (2%)

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
           I  VY+L  G++    +K I +A + +   + ++I   L QK      ++A   IH+P  
Sbjct: 14  IHPVYNLKEGITQKELEKYIDKAYALMKEAITDFIPPSLRQKYRLIERSQALLYIHHP-- 71

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSP 273
             D      +   L Y+E L  Q+A+  ++ ++ K   G     E +   ++   + F  
Sbjct: 72  -YDENSLKQSLRHLKYEEFLKFQLAMRCIKDQESKLVKGQGKQFEREEVMRLKHTLAFEL 130

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           ++ QE  I++I+ D++ +  M R+LQGDVG GKT+VA   M A + A  QA +MAP  IL
Sbjct: 131 SEDQEKVIEEIMDDLASEKIMYRLLQGDVGCGKTVVAAFGMYACILAHKQAALMAPTEIL 190

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH + ++   ++  I+VE + G++P   +   LER+   +  +++GTH LFQ+ + +Y
Sbjct: 191 AKQHTDNLRAMFKDMDIVVEGLYGSLPAQDKASILERLKTNEIDLLVGTHTLFQEQVDFY 250

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L +V+ DEQHRFGV+QR +L  K      LLM+ATPIPRTL L+  GD+++S I + P 
Sbjct: 251 DLGMVVADEQHRFGVEQRRRLLAKGDKVDFLLMSATPIPRTLALSLYGDMEVSSIHQLPK 310

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GR PI T ++    +  ++E + + + EG + Y +CP IE  ++   R+V++ +  +   
Sbjct: 311 GRMPITTKLVASKSMAPILEEVLMYIDEGNQCYVVCPAIENNEDYKMRNVMDIYKGMQAS 370

Query: 514 F--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 I ++HGRMS  +K+ VM  F  GT ++L+ TTVIEVG+DV +A+I+II +A  F
Sbjct: 371 IGRKYRIGLLHGRMSAQEKDQVMREFVAGTLQILVTTTVIEVGVDVKNANIMIIYDAHRF 430

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+Q+HQLRGRVGRG++   C LL        S  RL   + T DGF +A  DL+ R  G
Sbjct: 431 GLSQIHQLRGRVGRGDKAGYCYLLSDTK-DMESKKRLQACEKTNDGFELARIDLELRGPG 489

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           +ILG +QSG+P F++       ++LE+AR+DA  IL    ++       IR   Y+ +  
Sbjct: 490 DILGTRQSGVPGFILGDVIQDANILEVAREDACAILK---NIECEEYAPIRA--YIQELK 544

Query: 692 EAFQF 696
            A + 
Sbjct: 545 TATRL 549


>gi|260202115|ref|ZP_05769606.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis T46]
 gi|289444537|ref|ZP_06434281.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis T46]
 gi|289417456|gb|EFD14696.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis T46]
          Length = 737

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 213/701 (30%), Positives = 343/701 (48%), Gaps = 67/701 (9%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYISQHSSFQLQK---RRPY 90
                  DLL ++P S+++   R  I +        +TI   I+   SF ++K   R+  
Sbjct: 24  FGMRTVDDLLRHYPRSYVEGAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNRKCL 83

Query: 91  KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150
           +I +  G  ++T  FF    + +     +  K+ ++G++   K  + + HP ++  +S D
Sbjct: 84  RITVGGGRNKVTATFFN--ADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSPD 141

Query: 151 VNFPLIE--------------------------AVYSLPTGLSVDLFKKIIVEALSRLPV 184
                                             +Y   T +      K + + L  L  
Sbjct: 142 GKNHGTRSLKSIADASKAISGELVVEEFERRFFPIYPASTKVQSWDIFKCVRQVLDVLDR 201

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + + +  +L  K       EA   I     A+       ARERL +DE +  Q AL+  R
Sbjct: 202 VDDPLPAELRAKHGLIPEDEALRAI---HLAESQSLRERARERLTFDEAVGLQWALVARR 258

Query: 245 KQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
                E G     +    A ++LR +PF  T  Q   +  +   ++    + R+LQG+VG
Sbjct: 259 HGELSESGPSAAWKSNGLAAELLRRLPFELTAGQREVLDVLSDGLAANRPLNRLLQGEVG 318

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-----------IV 352
           SGKT+VA++AM   V+AG Q  ++AP  +LA QH   I+       +            V
Sbjct: 319 SGKTIVAVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRV 378

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+M    +++    IA GQ  I+IGTHAL Q+++ ++ L +V+VDEQHRFGV+QR 
Sbjct: 379 ALLTGSMTAGQKKQVRAEIASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRD 438

Query: 413 KLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467
           +L  KA     PH+L+MTATPIPRT+ LT  GD++ S +   P GR+PI T +I +    
Sbjct: 439 QLRAKAPAGITPHLLVMTATPIPRTVALTVYGDLETSTLRALPLGRQPIATNVIFVKDKP 498

Query: 468 --IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR---SVVERFNSLHEHFTS------ 516
             +D    R+    + G++AY + P+I+E  +++ +           L     S      
Sbjct: 499 AWLDRAWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGVRPSATAEGLFSRLRSAELAEL 558

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A++HGR+S  DK++ M +F+ G   +L+ TTVIEVG+DV +A+++++ +A+ FG++QL
Sbjct: 559 RLALMHGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQL 618

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGR+GRGE  S C+L    P    +  RL  +  T DGF +A+ DLK+RKEG++LG 
Sbjct: 619 HQLRGRIGRGEHPSVCLLASWVPPDTPAGQRLRAVAGTMDGFALADLDLKERKEGDVLGR 678

Query: 637 KQSGM-PKFLIAQPELHDSLLEIARKDAKHILTQ--DPDLT 674
            QSG      +     H+  +  AR           DP L 
Sbjct: 679 NQSGKAITLRLLSLAEHEEYIVAARDFCIEAYKNPTDPALA 719


>gi|225424226|ref|XP_002280664.1| PREDICTED: similar to ATP-dependent helicase [Vitis vinifera]
          Length = 1272

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 222/752 (29%), Positives = 355/752 (47%), Gaps = 99/752 (13%)

Query: 9    LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
            L   +S   G+ K++   L       N        LL + P ++ D      +  I + +
Sbjct: 516  LDKSISFIPGLQKRHCRQLE------NCGFHTLRKLLQHFPRTYADLKN--ALIGIDDGQ 567

Query: 69   IVTITGYISQHSSFQLQ-KRRPYKILL-----------------NDGTGE----ITLLFF 106
             +   G I      +        ++++                 ND  G+    + L  F
Sbjct: 568  YMISIGKILSSRGVKASCSFSFLEVVVGCEIADCESKYEQMIGANDSWGKKTIYLHLKKF 627

Query: 107  YRKTEM--------LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
            +R T          L+    EG  + V+GK++ ++ +       Y     +D     +  
Sbjct: 628  FRGTRFTNVPFLRCLQEKHKEGDIVCVSGKVRTMRTKDHYEMREYNLDLIEDDQDSSVCP 687

Query: 159  ------VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
                  +Y    GL+ +  + II  AL  LPV  + I KD+++     S+  A+  IH P
Sbjct: 688  KGRPYSIYPSKGGLNSNFLRDIISRALHSLPVNIDPIPKDIIEDFGLLSLHSAYVGIHQP 747

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALL---------------LMRKQFKKEIGIPINV 257
            +  K+ +     R+RL +DE    Q+  L               L+ K  K E+      
Sbjct: 748  KDLKEADLA---RKRLIFDEFFYLQLGRLFQILEGLGTKIEKDGLLDKYRKPELNTVFVE 804

Query: 258  EGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            E     +  L+ +P+S T SQ SA  +I+ D+ +   M R+LQGDVG GKT+VA +A   
Sbjct: 805  EWSSLTKNFLKALPYSLTSSQLSAASEIIWDLKRPVPMNRLLQGDVGCGKTVVAFLACME 864

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-----QIIVEIITGNMPQAHRRKALERI 371
             + +G QA  M P  +LA QHYE +    +N      +  + ++TG+ P    R   + +
Sbjct: 865  VIGSGYQAAFMVPTELLALQHYEQLINLLENMEGAECKPSIALLTGSTPSKQSRMTHKGL 924

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR-------------------- 411
             +G   ++IGTH+L  + +++  L + +VDEQHRFGV QR                    
Sbjct: 925  QNGDISLVIGTHSLISEKVEFSALRIAVVDEQHRFGVIQRGRFNSKLYYNSISSRMAEAS 984

Query: 412  ---LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
               L       APH+L M+ATPIPRTL L   GD+ +++IT+ P GR P++T  I     
Sbjct: 985  SDVLSEGDTRMAPHILAMSATPIPRTLALALYGDMSLTQITDLPPGRTPVETYTIEGCDA 1044

Query: 468  -IDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFT-SSIAIIHGR 524
              ++V + +   L  G K Y + P IE+ ++    R+      ++   F      ++HGR
Sbjct: 1045 GFEDVYQMMLDELEVGGKIYIVYPVIEQSEQLPQLRAASTDLETISSRFQGYKCGLLHGR 1104

Query: 525  MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
            M   +K+  +  F++G   +L++T VIE+G+DV DAS++++ NAE FG+AQLHQLRGRVG
Sbjct: 1105 MKSDEKDEALRRFRSGETNILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVG 1164

Query: 585  RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPK 643
            RG   S C+L+     + +   RL VL+N+ DGF +A  DL  R  G++LG KQSG +P+
Sbjct: 1165 RGVRKSKCLLVSS---TASGLNRLKVLENSSDGFYLANMDLLLRGPGDLLGKKQSGHLPE 1221

Query: 644  FLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            F IA+ E+  ++L+ A   A  IL    DL  
Sbjct: 1222 FPIARLEIDGNILQEAHLAALKILGTSHDLEQ 1253


>gi|19552544|ref|NP_600546.1| RecG-like helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62390208|ref|YP_225610.1| RecG-like helicase [Corynebacterium glutamicum ATCC 13032]
 gi|21324094|dbj|BAB98719.1| RecG-like helicases [Corynebacterium glutamicum ATCC 13032]
 gi|41325544|emb|CAF20024.1| RecG-like helicase [Corynebacterium glutamicum ATCC 13032]
          Length = 707

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 221/673 (32%), Positives = 345/673 (51%), Gaps = 53/673 (7%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILL 94
              T   +LL +H   +        I + +E  +VTI G ++    S+    +  YK+ +
Sbjct: 26  LGYTTAEELLRHHVRKYSHHGSGVGIGDATEGDLVTIVGQVAFAKQSYTQSGKMLYKVTV 85

Query: 95  NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP 154
              T  I + FF    + +  +  EG +   TGK+K  +N   + HP +I          
Sbjct: 86  LTETERIGISFF--GAKHIPRLLPEGTRALFTGKVKFFRNEPQLSHPEFIVIPDPGSGRR 143

Query: 155 L--------------------------IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           L                             +Y+    ++       +   L  +PV+ E 
Sbjct: 144 LTATGGMKSLAAYGDVEEVALRLVDREYIPIYAGTATMTTWRIMAAVQRVLETMPVIKEP 203

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +    +  +  PS  EA   IH+P      E  S    RL Y+E L+    + + R   K
Sbjct: 204 LS---VVPEGMPSFDEAIRGIHDPG----HESPSTFINRLKYNEALSLATVMAIRRADTK 256

Query: 249 KEIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
                P+    K     ++  + F  T  Q+  I++I  D+ Q+  M R+LQG+VGSGKT
Sbjct: 257 NRKAPPMPRALKGHQHMLIDALNFQLTVGQKQVIREISADIEQRVPMSRLLQGEVGSGKT 316

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRR 365
           +V+LIAM  A+++G Q  ++AP  +LA QH   + K   +    I V ++TG+MP   ++
Sbjct: 317 IVSLIAMLQAIDSGRQCAMLAPTEVLATQHARSLSKTLDDAGLDINVVLLTGSMPTGAKK 376

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APH 422
           +AL  I  G A I++GTHAL QD+++++ L LV+VDEQHRFGV+QR +L  K      PH
Sbjct: 377 EALLEIISGDADIVVGTHALIQDTVEFFDLGLVVVDEQHRFGVEQRDQLRTKGREGLTPH 436

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVL 479
           +L+MTATPIPRT+ +T  GD+ +S + E P GR+PI+T +IP ++   +    ER+   +
Sbjct: 437 LLVMTATPIPRTIAMTVFGDLAVSTLRELPGGRRPIQTSVIPDHKPGWVKRGWERIGEEV 496

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSF 537
             G++AY +CP+IE +       V+E    L E      ++ ++HGRM    K+SVM  F
Sbjct: 497 LAGRQAYVVCPRIEGEG-----GVLEIHAYLSEQVYPGLNVGMLHGRMDTDLKDSVMQEF 551

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G   +L+ATTVIEVGIDV +A++++I  AE FG++Q+HQLRGRVGRG+  S C+L   
Sbjct: 552 AQGEIDILVATTVIEVGIDVANATVMLIREAERFGVSQIHQLRGRVGRGQHDSLCLLHTT 611

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLL 656
                    RL+ +  T DGF ++E DL+ R+EG++LG +QSG   K           ++
Sbjct: 612 FDEDSPQGQRLAAISTTTDGFQLSELDLQVRQEGDVLGTRQSGSDTKLRHLSFISDQKII 671

Query: 657 EIARKDAKHILTQ 669
           E A  DA  ++  
Sbjct: 672 ERALIDATELVAA 684


>gi|255570116|ref|XP_002526020.1| conserved hypothetical protein [Ricinus communis]
 gi|223534667|gb|EEF36360.1| conserved hypothetical protein [Ricinus communis]
          Length = 983

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 218/749 (29%), Positives = 358/749 (47%), Gaps = 97/749 (12%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+S   G+ K+      +     N        LL + P ++ D      +  + + +
Sbjct: 229 LDTPVSCIPGLSKR------QHHQLENCGFHTLRKLLHHFPRTYADLQN--ALVGVDDGQ 280

Query: 69  IVTITGYISQHSSFQ-LQKRRPYKI--------------LLNDGTGE-----ITLLFFYR 108
            +   G I      +        ++               ++  +GE     + L  F+R
Sbjct: 281 YLISVGKILSSRGVRASYSFSFLEVVVGCEVAIDESQHNTIDTDSGETRTIYLHLKKFFR 340

Query: 109 -----KTEMLK---NVFFEGRKITVTGKIKKL--KNRIIMVHPHYIFHNSQDVN----FP 154
                    LK   N    G  + ++GK+K +  K+   M   +       DV+      
Sbjct: 341 GVRFTNQPFLKSLANKHKLGDVVCISGKVKTMSTKDHYEMREYNIDVLKDDDVSSLHPEG 400

Query: 155 LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
               +Y    GL+ D  + II  AL  L    + I K+++Q      + +A+  IH PR 
Sbjct: 401 RPYPIYPSKGGLNPDFLRDIIARALQALGPGIDPIPKEIIQDFRLLHLHDAYTGIHQPRN 460

Query: 215 AKDFEWTSPARERLAYDELLAGQIALL----------------LMRKQFKKEIGIPINVE 258
            ++ +     R RL +DE    Q+  L                L++ +  +   + +   
Sbjct: 461 VEEADSA---RRRLIFDEFFYLQLGRLFQMLEGLSTRTEKDGLLLKYRKPELNALYVENW 517

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             + +K L+ +P+S T SQ +A+ +I+ D+ +   M R+LQGDVG GKT+VA +A    +
Sbjct: 518 SSLTKKFLKALPYSLTSSQLNAVSEIIWDLKRPVPMNRLLQGDVGCGKTVVAFLACMEVI 577

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNT-----QIIVEIITGNMPQAHRRKALERIAH 373
            +G QA  M P  +LA QHYE + K  +       +  + ++TG+ P    R   + +  
Sbjct: 578 GSGYQAAFMVPTELLAIQHYEHLLKLLETMEENQSKPSIALLTGSTPLKQSRMIRKDLQS 637

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT------------------ 415
           G   ++IGTH+L  +++++  L + +VDEQHRFGV QR +                    
Sbjct: 638 GDISMVIGTHSLISENVEFSALRIAVVDEQHRFGVIQRGQFNSKLYYTSLRSRMAVTTSI 697

Query: 416 -----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--I 468
                    APH+L M+ATPIPRTL L   GD+ +++IT+ P GR P++T II  N    
Sbjct: 698 GSSKGDVYMAPHILAMSATPIPRTLALALYGDMSLTQITDLPPGRIPVETHIIEGNSQGF 757

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFT-SSIAIIHGRMS 526
           +++ + +   L  G + Y + P IE+ ++    R+      ++ + F   +  ++HGRM 
Sbjct: 758 EDIYKMILDELEAGGRVYLVYPVIEQSEQLPQLRAASADLQAISDRFQRFNCGLLHGRMK 817

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+  +  F++G  ++L++T VIEVG+DV DAS++++ NAE FG+AQLHQLRGRVGRG
Sbjct: 818 SDEKDEALRRFRSGETQILLSTQVIEVGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRG 877

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFL 645
           E  S CILL     + +S  RL VL+ + DGF +A  DL  R  G++LG KQSG +P F 
Sbjct: 878 ERKSKCILLGS---TSSSLNRLKVLEKSSDGFHLANADLLLRGPGDLLGKKQSGHLPDFP 934

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPDLT 674
           IA+ E+   +L+ A   A  +L    DL 
Sbjct: 935 IARLEIVGKILQEAHDAALKVLGDSHDLE 963


>gi|314919261|gb|EFS83092.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL050PA1]
          Length = 749

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 203/717 (28%), Positives = 343/717 (47%), Gaps = 63/717 (8%)

Query: 7   NPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE 66
             L  PL+    VG K +   S +      +     + L + P  ++       +S +  
Sbjct: 20  KELHRPLAE--AVGAKTAKAFSAL------HVGTVGEALGHLPRRYLTGTETTDLSHLVI 71

Query: 67  ERIVTITGYISQHSS--------FQLQKRRPYKILLNDGTGEITLLFFYRK--TEMLKNV 116
           +  V +   +              + + R+  +++L+DG   + + FF +       + +
Sbjct: 72  DTEVALVADVVGVEVHTNKTVTGRERRPRQRLEVMLSDGKARLPVTFFGKPHIVSYWQRI 131

Query: 117 FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPLIEAVYS 161
           F         GK+ + +    +VHP ++  +               +  V    +  +Y 
Sbjct: 132 FSAHTHGIFVGKVGEFRGNPQLVHPDFVMIDRNGKVVAGREEGKVMAAQVQRHGLLGLYP 191

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
             + L       +    L   P L + + + L Q+   PS+ EA++ IH P    + +  
Sbjct: 192 QTSKLRTWEIASVESMLLESTPELEDTLPEWLRQEADLPSLWEAYHAIHYPHSVAEADRG 251

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESA 280
           +   ERL ++E +A Q+ + + R+  ++      +  +G +       +PF+PT  Q+  
Sbjct: 252 A---ERLIWEEAIATQVTMAVRRRSAERHDAPVCSRRDGGLLVAFEDRLPFTPTVGQDEV 308

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            + I  D+S    M R+LQG+VGSGKT VAL AM   V+AG QAV++AP  +LAQQHY  
Sbjct: 309 SRVIDADLSADRPMHRLLQGEVGSGKTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRT 368

Query: 341 IKKYTQNTQ-----------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
           I     +               V ++TG+M  A  R AL  IA   A II+GTH+L    
Sbjct: 369 IINMLGDLASGEGLDAPEISTGVALLTGSMKAAGTRAALADIASAAAGIIVGTHSLLSGR 428

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           + Y  + LV+VDEQHRFGV+QR  LT  +   PH L++TATPIPRT+ +T  GD+++S +
Sbjct: 429 VIYNDIGLVVVDEQHRFGVEQRSVLTTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSL 488

Query: 449 TEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
            E P GR  ++T ++ +    + +     R++     G + + +CP+I      +    R
Sbjct: 489 RELPTGRADVQTTVVDLPAHGSWLTRAWRRIREECDAGHQVFVVCPRINSDDADDVEGGR 548

Query: 502 SVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                   L     +       +  +H R+   +K+ VMD F  G  ++LI+TTVIEVG+
Sbjct: 549 PPAAAVEELAPQLATGPLAGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGV 608

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV +A++++I +A+ FG++QLHQLRGR+GRG     C+L+   P    +  RL  +  + 
Sbjct: 609 DVPNATMMVIMDADRFGVSQLHQLRGRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASR 668

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDP 671
           DGF +AE DL QR EG +LG  Q+G      + +   H  ++  ++  A+  + + P
Sbjct: 669 DGFELAELDLAQRHEGNVLGSSQAGYSSPLRLLRVLDHAEIVTASKDLAERWVAEAP 725


>gi|331009375|gb|EGH89431.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 488

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 211/490 (43%), Positives = 307/490 (62%), Gaps = 12/490 (2%)

Query: 212 PRKAKDFEWT----SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           P    D E        A+ RLA++ELL  Q++   +R+  + +    + V  K+ ++ L 
Sbjct: 1   PPADADVEELALGHHWAQHRLAFEELLTHQLSQQRLRESLRSQRAPALPVAKKLPKQFLA 60

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           N+ F+PT +Q+   K++  D+SQ   MLR++QGDVGSGKT+VA +A   A+EAG Q  +M
Sbjct: 61  NLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVGSGKTVVAALAALQALEAGYQVALM 120

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  ILA+QHY   +++ +   + V  + G +    R  +LE+IA G   +++GTHALFQ
Sbjct: 121 APTEILAEQHYINFQRWLEPLGVGVAWLAGKLKGKARATSLEQIASGTP-MVVGTHALFQ 179

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDI 443
           D +Q+  L LVI+DEQHRFGVQQRL L +K       PH L+MTATPIPRTL +++  D+
Sbjct: 180 DEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLMCPHQLIMTATPIPRTLAMSAYADL 239

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           D S + E P GR P+ TV++  +R  EV+ER++   +EG++AYW+C  IEE +E   ++ 
Sbjct: 240 DTSILDELPPGRTPVNTVLVADSRRLEVVERVRAACAEGRQAYWVCTLIEESEELTCKAA 299

Query: 504 VERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
              +  L        + +IHGRM   +K ++M  FK G  +LL+ATTVIEVG+DV ++S+
Sbjct: 300 ETTYEELSSALGEVRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSL 359

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           +IIEN E  GLAQLHQLRGRVGRG  +S C+LLYHPPLS+    RL +++ T DGF+IAE
Sbjct: 360 MIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHPPLSQIGRQRLGIMRETNDGFVIAE 419

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           +DL+ R  GE+LG +Q+G+ +F +A       LL   R  A+ +L + P   S      R
Sbjct: 420 KDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPAVRDAAQALLERWPQHVSPL--LDR 477

Query: 683 ILLYLYQYNE 692
            L +  QY +
Sbjct: 478 WLRHGQQYGQ 487


>gi|213964624|ref|ZP_03392824.1| ATP-dependent DNA helicase RecG [Corynebacterium amycolatum SK46]
 gi|213952817|gb|EEB64199.1| ATP-dependent DNA helicase RecG [Corynebacterium amycolatum SK46]
          Length = 716

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 206/697 (29%), Positives = 334/697 (47%), Gaps = 53/697 (7%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           VG K +  L               D L   P  ++ +     +S       +T    +  
Sbjct: 18  VGPKIAKKLH-----TAFGMETVSDALTNFPKRYVAQGKSLDVSFSDIGDTITTVVEVHS 72

Query: 79  HSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
            +       +R+P KI ++DG   +    F    E L+N+   G ++ + G + + +N +
Sbjct: 73  IAPAPAFADRRKPLKIYVSDGVRILPAAIF--GAEWLRNMLHPGVRLLIVGTLSEFRNEL 130

Query: 137 IMVHPHYIF------------------------HNSQDVNFPLIEAVYSLPTGLSVDLFK 172
            + +   +                            Q +       +Y    G++     
Sbjct: 131 QLKNVDCMVLKADGSVGAATGKLATLTKTAKGIAEMQRLLTRPYLPIYRGRKGVAGIHLA 190

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
             +   L  LP+ P+ +       +       A    H P           A  RL YDE
Sbjct: 191 LYMQRILEWLPLQPDPLPAT---PEGLTDFDSALRGAHFP----SIAGPDIALARLKYDE 243

Query: 233 LLAGQIALLLMRK-QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            L  Q+A+   ++ Q        + V G +  ++ R +PFS T  Q +   DI  DM++ 
Sbjct: 244 ALELQLAVGARKRTQASLTAPACMEVAGGLRDELRRGLPFSLTDGQVAVAADIAHDMARP 303

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI- 350
           N M R+L G+VGSGKT+VAL+ M  AV+A  Q  ++AP  +LAQQHY  +    +   + 
Sbjct: 304 NPMNRLLAGEVGSGKTVVALLGMLQAVDASRQCAMLAPTEVLAQQHYRSLTAMLEQAGVA 363

Query: 351 -IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
             V ++TG+M    RR  L    +G+A I++GTHAL  + ++++ L LV+VDEQHRFGV+
Sbjct: 364 VTVRLLTGSMSTKERRATLLEAVNGEADIVVGTHALLSEGVEFFDLGLVVVDEQHRFGVR 423

Query: 410 QRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI- 465
           QR +L  +      PH+L+M+ATPIPRT+ +T  GD+ +S++TE P GR+ I++ ++P  
Sbjct: 424 QRDQLRSRGRGGMTPHLLVMSATPIPRTVAMTIFGDLAVSQLTELPRGRQEIQSFVVPTL 483

Query: 466 ---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF--NSLHEHFTSSIAI 520
                     ER+   +++G +A+ +CP+I   +E      VE     +  +     I+ 
Sbjct: 484 EKPRWEARTWERIAEEVAKGNRAFIVCPRITRDEEQFLDESVEAVFDRARKKLPGVRISQ 543

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG M+  DK+ VM +F  G   +L++TTVIEVG+DV +A+I++I  AE +G++Q+HQLR
Sbjct: 544 LHGNMAPEDKDRVMQAFATGQLDVLVSTTVIEVGVDVPEATIMMIRRAESYGISQIHQLR 603

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG++   C L  H        TRL  +  T DG  +AE DL  R  G++LG  QSG
Sbjct: 604 GRVGRGDQGGLCFLCTHTHSQTPERTRLERIAATTDGIQLAELDLATRSFGDLLGDDQSG 663

Query: 641 MP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           +     +        ++E  R DA  +L  +  L + 
Sbjct: 664 LATGLGLVDLTTDGEIIERTRHDATALLDGNEKLVAE 700


>gi|297737705|emb|CBI26906.3| unnamed protein product [Vitis vinifera]
          Length = 988

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 222/752 (29%), Positives = 355/752 (47%), Gaps = 99/752 (13%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +S   G+ K++   L       N        LL + P ++ D      +  I + +
Sbjct: 232 LDKSISFIPGLQKRHCRQLE------NCGFHTLRKLLQHFPRTYADLKN--ALIGIDDGQ 283

Query: 69  IVTITGYISQHSSFQLQ-KRRPYKILL-----------------NDGTGE----ITLLFF 106
            +   G I      +        ++++                 ND  G+    + L  F
Sbjct: 284 YMISIGKILSSRGVKASCSFSFLEVVVGCEIADCESKYEQMIGANDSWGKKTIYLHLKKF 343

Query: 107 YRKTEM--------LKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
           +R T          L+    EG  + V+GK++ ++ +       Y     +D     +  
Sbjct: 344 FRGTRFTNVPFLRCLQEKHKEGDIVCVSGKVRTMRTKDHYEMREYNLDLIEDDQDSSVCP 403

Query: 159 ------VYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
                 +Y    GL+ +  + II  AL  LPV  + I KD+++     S+  A+  IH P
Sbjct: 404 KGRPYSIYPSKGGLNSNFLRDIISRALHSLPVNIDPIPKDIIEDFGLLSLHSAYVGIHQP 463

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALL---------------LMRKQFKKEIGIPINV 257
           +  K+ +     R+RL +DE    Q+  L               L+ K  K E+      
Sbjct: 464 KDLKEADLA---RKRLIFDEFFYLQLGRLFQILEGLGTKIEKDGLLDKYRKPELNTVFVE 520

Query: 258 EGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           E     +  L+ +P+S T SQ SA  +I+ D+ +   M R+LQGDVG GKT+VA +A   
Sbjct: 521 EWSSLTKNFLKALPYSLTSSQLSAASEIIWDLKRPVPMNRLLQGDVGCGKTVVAFLACME 580

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-----QIIVEIITGNMPQAHRRKALERI 371
            + +G QA  M P  +LA QHYE +    +N      +  + ++TG+ P    R   + +
Sbjct: 581 VIGSGYQAAFMVPTELLALQHYEQLINLLENMEGAECKPSIALLTGSTPSKQSRMTHKGL 640

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR-------------------- 411
            +G   ++IGTH+L  + +++  L + +VDEQHRFGV QR                    
Sbjct: 641 QNGDISLVIGTHSLISEKVEFSALRIAVVDEQHRFGVIQRGRFNSKLYYNSISSRMAEAS 700

Query: 412 ---LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
              L       APH+L M+ATPIPRTL L   GD+ +++IT+ P GR P++T  I     
Sbjct: 701 SDVLSEGDTRMAPHILAMSATPIPRTLALALYGDMSLTQITDLPPGRTPVETYTIEGCDA 760

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFT-SSIAIIHGR 524
             ++V + +   L  G K Y + P IE+ ++    R+      ++   F      ++HGR
Sbjct: 761 GFEDVYQMMLDELEVGGKIYIVYPVIEQSEQLPQLRAASTDLETISSRFQGYKCGLLHGR 820

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   +K+  +  F++G   +L++T VIE+G+DV DAS++++ NAE FG+AQLHQLRGRVG
Sbjct: 821 MKSDEKDEALRRFRSGETNILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVG 880

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPK 643
           RG   S C+L+     + +   RL VL+N+ DGF +A  DL  R  G++LG KQSG +P+
Sbjct: 881 RGVRKSKCLLVSS---TASGLNRLKVLENSSDGFYLANMDLLLRGPGDLLGKKQSGHLPE 937

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           F IA+ E+  ++L+ A   A  IL    DL  
Sbjct: 938 FPIARLEIDGNILQEAHLAALKILGTSHDLEQ 969


>gi|227499432|ref|ZP_03929543.1| RecG family helicase [Anaerococcus tetradius ATCC 35098]
 gi|227218494|gb|EEI83737.1| RecG family helicase [Anaerococcus tetradius ATCC 35098]
          Length = 663

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 204/641 (31%), Positives = 320/641 (49%), Gaps = 27/641 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L++ +G+G K +  L ++            DL  Y+P  + DR     I +I +      
Sbjct: 3   LTSLKGIGPKKASDLKRL------GILGVSDLYSYYPKEYEDRTRLRSIIDIKDSNKHYF 56

Query: 73  TGYISQHSSFQLQKRRPYKIL----LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              I     F+   +     L    L + + +I L++F  +        FEG++     +
Sbjct: 57  CWQIVSKLYFKNLSKMTISYLYARELTNPSYKIRLIWFNDR--FSPRKLFEGKEYKFFCQ 114

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           I + K     V+P  IF +  +     I  +YSL  GLS       + EAL       + 
Sbjct: 115 ITEKKGIYEAVNP--IFCDLDEDEIGSIIPLYSLTKGLSHKQISTYVEEALKYYDSKEDI 172

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           I+  LL K       +    IH P      E    A+ ++   +LL     L  ++++ +
Sbjct: 173 IDYSLLDKFKLNKRIDNLREIHRPSS---IENLRKAKSQIKIIDLLKDLYFLDYLKEKTR 229

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +  I +        +IL+ IPF+ T+SQE ++ +IL+D++  N   R+L GDVGSGKT+
Sbjct: 230 HKQSINLYYN---LSEILKEIPFTLTRSQEKSLIEILEDVASPNSANRLLVGDVGSGKTI 286

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA+I M        Q+ +M P  +LA Q +E  K      +I   ++T +     + K  
Sbjct: 287 VAIITMIVFALNSYQSAMMVPTELLAIQQFEKNKYLFDKFKIKAALLTSSTKNKQKLK-- 344

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E I  G+  ++IGTHAL Q+ + +  L  V+ DEQHRFGV QR  L  K    + L MTA
Sbjct: 345 EDIRDGKIDLLIGTHALIQEDVVFKNLRFVVNDEQHRFGVSQRQMLALKGHEVNYLTMTA 404

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRT+ L     ID+S I E P GR PI T II   +I  +   ++  +   ++ Y +
Sbjct: 405 TPIPRTMSLKISQIIDLSIINELPKGRIPITTKIIGSEKISLLYNFIEENIRASRQVYVV 464

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              I+   +++  ++ + +    +  +  IAI+HG+++  DKE ++  F  G+  +L+AT
Sbjct: 465 TNNIDADDKNSLENLYKLYKK--KFPSYRIAILHGKLTANDKEDILKEFSEGSIDILLAT 522

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVGIDV +A+ +II NA++FGL+ LHQLRGRVGRGE  S C L+   P S  S   L
Sbjct: 523 TVIEVGIDVANANTMIIYNADNFGLSTLHQLRGRVGRGEYKSYCFLVSDKP-SPTSK--L 579

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           ++L  + DGF IA++D + R  G+IL + Q G     I   
Sbjct: 580 NILVKSNDGFEIAKKDFELRGGGKILSLIQHGKNLSKIEYL 620


>gi|301165526|emb|CBW25097.1| putative ATP-dependent DNA helicase [Bacteriovorax marinus SJ]
          Length = 713

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 204/678 (30%), Positives = 343/678 (50%), Gaps = 36/678 (5%)

Query: 20  GK-KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           G  K +  L       +A  +    LL+  P                EE + +  G +  
Sbjct: 24  GPTKSAQSL------IDAGYSTLWQLLWIIPLRTQATPVIKNFQNAYEECLFSGVGKVLS 77

Query: 79  HSSFQLQKRR--------PYKILLND--GTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
             S    K R            ++ D      I L +F       +++      +  +GK
Sbjct: 78  TKSLPSFKGRGKNQAPLLNITAIVKDIFSDNIIELKWFNAYPSQSQSIQKL-DYLKFSGK 136

Query: 129 IKKLKNRIIMVHPHYI--------FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
           ++   +   +V+P +             ++   P ++  Y    G++    KK+I +  +
Sbjct: 137 VQIYNSSKQIVNPDFESILSTELPTKEEEENPLPNLKIQYPTINGVNSSNIKKVIDKIPA 196

Query: 181 RL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS-----PARERLAYDELL 234
           +L   + + I +D+ +++    + ++F +IH   K +  E  S      A++RL Y+E L
Sbjct: 197 QLWREIEDIIPEDIREQRKLLPLDQSFLLIHA--KTEHLEKWSDGLYEEAKKRLIYEEFL 254

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
             Q+ + L +K+      I + ++    +K     P+  T  Q+S +K+I  D++   RM
Sbjct: 255 DEQLKIHLRKKKNINISAIKLEIKDVDRKKYSSIYPYELTPDQDSTLKEICIDLNSGKRM 314

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           +R++QGDVG GKT VA+ +    + +G Q  +M P   LA+QH+E I+ Y  + +   ++
Sbjct: 315 MRLVQGDVGCGKTTVAITSSFLIINSGLQVALMCPTEALAKQHFEEIQSYCHDLKFTSKL 374

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           + G+     +++ L+ + +G+   IIGTHAL Q+ +++  L L I+DEQH+FGV QRLKL
Sbjct: 375 LCGSTSSKDKKEILKGLENGEVDFIIGTHALIQNEVKFKNLALAIIDEQHKFGVDQRLKL 434

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             K    H L+M+ATPIPR+L +T  GD++IS I   P+GRK  KT I+      + +  
Sbjct: 435 LNKGEGTHCLIMSATPIPRSLSMTQYGDLNISTIKTIPSGRKGSKTRIVMPENFGKFLNF 494

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +    S G++ Y + P I E  + +  ++ E      + F + ++  +HG++ + DK  V
Sbjct: 495 INTRASMGEQIYIVVPAITESPKQDMLNLEEVLEKFKKFFPNLNVQGLHGQLKNEDKNQV 554

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  FKN    +LIAT+VIEVGI++++A+++ I N E FGL+ LHQLRGRVGRG++   C 
Sbjct: 555 LKEFKNNEVNILIATSVIEVGINILNATVMAIMNPERFGLSSLHQLRGRVGRGDKPGFCF 614

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELH 652
           L+    +S+ S  R+ V++   DGF IAEEDLK R  G+  G +QSG      IA   L 
Sbjct: 615 LVIDKSVSQESIHRVQVIEKYSDGFQIAEEDLKIRGAGDTFGKEQSGSNNGKKIANIILD 674

Query: 653 DSLLEIARKDAKHILTQD 670
            S L+  R D   IL Q+
Sbjct: 675 FSTLQAVRDDLSEILKQN 692


>gi|325479296|gb|EGC82392.1| putative ATP-dependent DNA helicase RecG [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 660

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 196/648 (30%), Positives = 318/648 (49%), Gaps = 24/648 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           ++T +G+G K S  L K+            DL  Y+P S+ DR    K++ +++ R    
Sbjct: 3   VTTLKGIGPKKSKDLKKL------GIVEVSDLYNYYPKSYEDRSKLKKLANVTDNRKCYF 56

Query: 73  TGYISQHSSFQLQKRRPYK-ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
              I      +    +    I   + T +I L++F  +         +G+       I+K
Sbjct: 57  EWKIVSRLFTKYINGKSVSYIYAREDTNKIRLIWFNDR--FSPRKLVKGKIYKFYTSIRK 114

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
                  ++P  IF + +D     I ++YSL  GLS       I E+L       + ++ 
Sbjct: 115 KSETYEAINP--IFCDLEDDEIGSIVSMYSLTKGLSNKQLSGFIAESLKYYDGKEDILDD 172

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
            LL++ S     +    +H+P      +  S A+ ++   +LL        +++  K   
Sbjct: 173 YLLEEFSLNDRLDNLKEVHSPTS---IDSLSNAKSQIKIIDLLKDLYICEFLKQMTKSSQ 229

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            + +  +      IL  + F  T+SQ S++K+IL+D        R+L GDVGSGKT+VAL
Sbjct: 230 DLKLEYD---LNDILSYLSFDLTRSQVSSLKEILKDCESNYTSNRLLVGDVGSGKTIVAL 286

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           I M      G Q+ +M P  +LA Q YE          I  EI+T       +    +++
Sbjct: 287 IVMLIFAMNGYQSAMMVPTELLAIQQYEKSIDLFNKLGISAEILTS--SSKDKNMIKDKL 344

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           A G   I++GTHAL Q+ + +  L  V+ DEQHRFGV QR  L  K    + L MTATPI
Sbjct: 345 AKGDIDILMGTHALIQEDVIFKNLKFVVNDEQHRFGVSQRQLLALKGERVNYLTMTATPI 404

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL L     ID+S I E P GRK I T ++  ++ D + E +   + +G++ Y +   
Sbjct: 405 PRTLSLRISDIIDLSIIDELPKGRKSIDTYLLGSDKEDLLYETIANNIDDGRQVYVVTNN 464

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           I+     +  ++ + +    + +   + ++HG++    KES++  F++G   +L+ATTVI
Sbjct: 465 IDSDDRYSLENLYKVYKKRFKSY--RVEMLHGKLKPDIKESILKKFQDGEIDILLATTVI 522

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           EVGIDV +A+ ++I N+ +FGL+ LHQLRGRVGRGE  S C L+   P   +   +L++L
Sbjct: 523 EVGIDVSNANTMVIYNSNNFGLSTLHQLRGRVGRGEYKSFCYLITDNP---SPSNKLNIL 579

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             + DGF IA++D   R  G+IL   Q G     I    ++   ++ A
Sbjct: 580 VKSNDGFEIAKKDYDLRGGGKILSYLQHGKNLSKIEYLNMNKDEIDKA 627


>gi|310830985|ref|YP_003966086.1| ATP-dependent DNA helicase RecG [Paenibacillus polymyxa SC2]
 gi|309250452|gb|ADO60018.1| ATP-dependent DNA helicase RecG [Paenibacillus polymyxa SC2]
          Length = 664

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 190/648 (29%), Positives = 321/648 (49%), Gaps = 33/648 (5%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
           +K+    +       +L  Y P  + D      I ++ +  +V + G I      +  ++
Sbjct: 11  AKLNQFESKGIMTVEELSRYFPRKYHDFRTITPIKQLKDGEVVAVVGKI---QEIKRYEK 67

Query: 88  RPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKI--KKLKNRIIMVHPHYI 144
           +  K+ ++D +G  + +++F++    +     EG      GK+          MV+P Y 
Sbjct: 68  KFIKVKVSDDSGGVLHVIWFHK--PYVHKWLKEGETYIFCGKVQEDLKFRSKNMVNPLYF 125

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
            H  +  +   +  VY    G++ +     I  +LS +    E +E  +L         +
Sbjct: 126 SH--EIKHLQRLVPVYPKIRGMADEYLMNSIQSSLSVMSQ-QENLEPSVLATFGLLKSGK 182

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
           A   IH P    + E       R  +D+L    + +         +    +N +  +   
Sbjct: 183 ALKAIHQPENEDELERAKT---RFIFDDLFEYSMQMHQYESLSSSKSPFLMN-QFSVVTD 238

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
            +R +PF  T  Q   ++ I        R+  ++QGDVG GKT+VA++ M  A E G Q+
Sbjct: 239 FMRRLPFELTDGQREVLRSISLKAKLGQRVNALVQGDVGCGKTIVAILLMVVAAENGFQS 298

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  +LA+QHYE + +  + T   V  +TG+     ++  L  +  G+ H+I+GTH+
Sbjct: 299 ALMAPTHVLAKQHYEELAERLKGTSFKVAFLTGDTKIREKKAILNGLDTGEIHMIVGTHS 358

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGD- 442
           +    ++   L L IVDE+HRFGV QR +L +KA    H + M+ATPIPRTL L   GD 
Sbjct: 359 IIGKDVKIPNLALSIVDEEHRFGVVQRNQLREKARQGVHHISMSATPIPRTLALAMWGDQ 418

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESN 499
           +D+  I   P GRKP++TV++   +       ++  + +G +AY +CP IE+ +    S+
Sbjct: 419 VDVYTIKTLPKGRKPVRTVLLSDEKR--CFNGIEQQIEKGHQAYVVCPLIEDSESESMSD 476

Query: 500 FRSVVERFNSLHEHFTS----SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             SV + F  + +HF+      I++I G+M   +    +  F      +LI+TT+IEVG+
Sbjct: 477 VDSVEKTFEKMKQHFSRNPKVKISLISGKMKPAEIAEEILRFTRNETNVLISTTIIEVGV 536

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +V +A++++++NAE FGLAQLHQLRGRVGRG   S C+L            +L  +  T 
Sbjct: 537 NVPNATMMVVKNAERFGLAQLHQLRGRVGRGNFESFCVLHSEKE----GNPKLQAMVETT 592

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKF---LIAQPELHDSLLEIAR 660
           DGF IA+ DL+ R  G+ +G KQSG   +   ++A  +L+  + E  R
Sbjct: 593 DGFKIAKRDLELRGTGDFIGTKQSGDNNYVMLMMANMDLYLRVKEEVR 640


>gi|302811380|ref|XP_002987379.1| hypothetical protein SELMODRAFT_446963 [Selaginella moellendorffii]
 gi|300144785|gb|EFJ11466.1| hypothetical protein SELMODRAFT_446963 [Selaginella moellendorffii]
          Length = 975

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 211/707 (29%), Positives = 349/707 (49%), Gaps = 71/707 (10%)

Query: 33  CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR-PYK 91
                      LL + P + +   +      + + + V + G I    + +++      +
Sbjct: 260 LQENGFYTARSLLNHFPRAHV--SFESPTDTLEDGQSVALFGTIVMTRASKIKDTLAMLE 317

Query: 92  ILL------------NDGTGE----ITLLFFYRKTEMLKNVF--------FEGRKITVTG 127
           +++            +D   E    + +  F++      + F         EG K  V+G
Sbjct: 318 VIVNCKIAQECLRPCDDEVDENTVFLHIKRFFQGPRFTSSWFLNKTASGYPEGSKAAVSG 377

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIE------AVYSLPTGLSVDLFKKIIVEALSR 181
           K+K +  +   +   Y     +  +F  +        VYS    L+    +  I   L  
Sbjct: 378 KVKAMNRKSHFLLKEYAVKVIEGEDFDQLRNDGEAYPVYSSKGLLNPKKIQAFIQRLLKG 437

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP   + +  ++  K    SI +A++ +H P      +  + AR R+ +D+    Q+A L
Sbjct: 438 LPTDIDPLPTEMRDKYDLLSIEQAYSTLHQPTN---LQGANVARRRIVFDDYFYLQLAFL 494

Query: 242 LMR---KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L R   +       + ++    ++ K+L  +PF  T  Q  A  +I+ D+ Q+  M R+L
Sbjct: 495 LQRNCLRGSTVNNELEMDKWSSLSLKVLNALPFKLTAGQIKAASEIMWDLRQQAPMSRLL 554

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT----QIIVEI 354
           QGDVG GKT+VA +A+   V +G QA +MAP   +  QHY+    + +      +  + +
Sbjct: 555 QGDVGCGKTIVAFLALLDVVSSGYQAALMAPTDFVVSQHYKQFLSWLEVLDEKDRPKIAL 614

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           ++G++     R   E IA+ +  +I+GTHAL  +S  +  L L ++DEQHRFGV QR +L
Sbjct: 615 LSGSLSAGEARLVREGIANREISLILGTHALISNSTNFPALGLAVIDEQHRFGVGQRDRL 674

Query: 415 T--------------------QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
                                + A+  HVLLM+ATPIPR+L LT  GD+ +S+I E P G
Sbjct: 675 KTAHASEAVEPDLDDADLERARLASTTHVLLMSATPIPRSLALTCHGDMSLSQINEIPPG 734

Query: 455 RKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-RSVVERFNSLH 511
           R+P+ T ++P +        E ++  L  G +A+++ P I E       R+ V  F+ + 
Sbjct: 735 RQPVDTYVLPDDEGGRRRAYELVRAELENGGRAFFVYPLINESSSFEHQRAAVTEFDKVV 794

Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           + F     A+ HGRM    +   +  F+ G C++L+AT V+EVGIDV +A++++IE+AE 
Sbjct: 795 KEFKDYKCALAHGRMKPDLRNQELKRFREGECQILVATKVVEVGIDVPEATVMLIESAEG 854

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           +GLAQLHQLRGRVGRG   S CILL        +  RL +L++T DGF +AEEDLK R  
Sbjct: 855 YGLAQLHQLRGRVGRGTRKSFCILLTCCD---TAVERLKLLESTTDGFRLAEEDLKMRGP 911

Query: 631 GEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           G++LG +QSG   +F++A+    + +L  AR  A+ +L  D +L S 
Sbjct: 912 GDLLGKRQSGTHLEFVLARLGEDNDILLQARAAAEELLETDKNLESH 958


>gi|229818293|ref|ZP_04448574.1| hypothetical protein BIFANG_03593 [Bifidobacterium angulatum DSM
           20098]
 gi|229784163|gb|EEP20277.1| hypothetical protein BIFANG_03593 [Bifidobacterium angulatum DSM
           20098]
          Length = 836

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 237/820 (28%), Positives = 354/820 (43%), Gaps = 145/820 (17%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL +   +  K      ++    +       D L Y+P    D      I E     
Sbjct: 24  LDTPLGSL--LSNKR-----RVSTLKSFGIVSVNDALTYYPFRVADPVPPRAIREARPGE 76

Query: 69  IVTITGYISQHSSFQLQKRRPYKI-LLNDGT---------GEI-TLLFFYRKTEMLKNV- 116
            +     + Q     +  RR Y++  + D +         G +  L+FF  +   +  + 
Sbjct: 77  SMAFAATVRQCRIMAMNARRGYRLEAVVDDSDFAATRNMPGSMARLVFFSGRKGYVDWMA 136

Query: 117 --FFEGRKITVTGKIKKLKNRIIMVHPHYIFHN----------SQDVNFPLI-------- 156
               +G ++ V+G   +   ++   HP                + D     I        
Sbjct: 137 MRLAQGARVIVSGTPSEYMGQLQFTHPDIATVAPAESQPAEGMATDAQSGSIAHQSGVGA 196

Query: 157 ---------------------EAVYSLPTGLSVDLFKKIIVEALSRL------------- 182
                                  VY     LS +   + IV  L  L             
Sbjct: 197 RHTRSYDATTIEEGMERVCRPRPVYHASARLSSERIHETIVGLLWMLGGRDMPAPGTDDI 256

Query: 183 ----------------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226
                             +P+ + + +  ++     AEAF  IH+P      +       
Sbjct: 257 AVMTNEDEERFTGTLAEAIPDILPEQVRTERGLMHRAEAFRAIHDP---ASVQAFHQGIA 313

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI----AQKILRNIPFSPTKSQESAIK 282
            L Y+E    Q ALL  R+        P   +G       ++ + ++PF  T  Q+  I 
Sbjct: 314 TLRYEEAFICQTALLQARQANGGASAHPCAGDGATGERLVERFVASLPFQLTDGQQQVIA 373

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           DI  DM+Q + M R+LQG+VGSGKT+VAL AM  AVEAG QAV++AP  +LA+QH E I+
Sbjct: 374 DIRNDMAQNHPMQRLLQGEVGSGKTVVALAAMLQAVEAGYQAVLVAPTLVLAEQHAENIR 433

Query: 343 ---KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +   +  I V +ITG M  A RRKA    A G+  II+ THA F  + Q   L LV+
Sbjct: 434 TMVEGLHSPSIPVTLITGGMKLAARRKAHAIAASGEPGIIVATHAAFSTAFQASNLALVV 493

Query: 400 VDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           +DEQHRFGV+QR  L  K    + PH+L+MTATPIPRT  +T  GD+DIS +TE P GRK
Sbjct: 494 IDEQHRFGVEQRESLQSKPIDGSTPHMLVMTATPIPRTAAMTWFGDLDISWLTELPGGRK 553

Query: 457 PIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKE---------------- 497
           PI+T +I       +  +   ++  +  G++AY +C +I++  E                
Sbjct: 554 PIRTFVINEEDGRTMANMFSHIRARIDAGERAYIVCARIDDPSEGADAGAADRDNGRGDD 613

Query: 498 ----------------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
                                      + ER   L +    + A + GR  D  K  VM 
Sbjct: 614 ANGAVLDPYATDDDMAQQRPPLHTVMQIKERLQKLPQFQGIAFATLTGRDKDDVKTQVMA 673

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +G   +L++TTVIEVG+DV  AS ++I +A+ +GL+QLHQLRGRVGRG   S   L+
Sbjct: 674 DFASGVTPVLVSTTVIEVGVDVPQASCMVIFDADRYGLSQLHQLRGRVGRGGTDSWAFLI 733

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDS 654
                   + +RL V+ ++ DG  IA+ DL+ R  G++LG  QSGM     + +      
Sbjct: 734 SRAEPGSIAESRLEVIHDSLDGAQIAQADLEFRGAGDVLGDTQSGMRSSLKLLRVVKDAD 793

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           L+  AR  A+ +L  DP+L     Q    +L   + NEAF
Sbjct: 794 LIVDARSRAERMLADDPELKGSV-QLAGAVLDFTRGNEAF 832


>gi|262195552|ref|YP_003266761.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365]
 gi|262078899|gb|ACY14868.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM
           14365]
          Length = 782

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 210/737 (28%), Positives = 344/737 (46%), Gaps = 73/737 (9%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI--- 64
            L AP++T  G+G   S  L++             DLL+  P  + D      + +    
Sbjct: 28  ALDAPVTTLPGIGPSLSARLAE------RGLHTLGDLLWLVPRRYDDARRVTPLGQAIAE 81

Query: 65  ---SEERIVTITGYISQHSSFQLQKRRPYKILL---NDGTGEITLLFFYRKTEMLKNVFF 118
                    T  G +      +  ++R +   L   +D    + + +F  +   L   F 
Sbjct: 82  ARREPSARTTTLGVVLASRFHRRGRKRWFDARLAGTDDPEARLLVRWFGARES-LAKRFP 140

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-----FPLIEAVYSLPTGLSVDLFKK 173
           +G ++ ++G++        M +P  +   +   +        I   Y    G++     K
Sbjct: 141 KGARVVLSGRLDCRTVGAEMQNPDILATTTAGGDRVSTAGGDILTRYPDVPGVAAATLAK 200

Query: 174 IIVEALSR-LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT-------SPAR 225
              EA+ R L  + + +   L  +     ++EA   +H P      +         S   
Sbjct: 201 ACREAVRRGLSQVVDAVPAALAARLDLVPLSEALRHLHEPPAGLSVDEVAALDSADSAWH 260

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPIN--VEGKIAQKILRNIPFSPTKSQESAIKD 283
            RLA++EL    + +   R   +    +P       + A+ + R +P+  T +Q+ AI+ 
Sbjct: 261 RRLAFEELFLLGLVVARRRHLHRLGRAVPCPALPWQERAELLGRALPYQLTGAQQRAIEI 320

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           I +++++   M R+LQGDVG+GKT VA  A   A  AG Q   MAP  +LA+QH   +  
Sbjct: 321 IGRELAEAVPMNRLLQGDVGAGKTAVAFAAAQQACSAGRQVAFMAPTALLAEQHAATLMP 380

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
           +     +   ++T   P+  R + L  +   Q  ++IGTHAL  + + +  L LVI+DEQ
Sbjct: 381 WCIALGMRATLLTAATPRKTRAEVLALLRAHQLDLVIGTHALLSEGVDFAALGLVIIDEQ 440

Query: 404 HRFGVQQRLKLTQKAT------------------------APHVLLMTATPIPRTLVLTS 439
           HRFGV QR+ L  K                          +PH+L+MTATPIPRTL LT+
Sbjct: 441 HRFGVAQRVGLRAKGEGEGDSAVPDENVRSSEKDASDAGGSPHLLVMTATPIPRTLALTA 500

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAYWICPQIE----- 493
            GD+D++ + E P GR+P +T+++  +   D     ++  L  G++ + +CP +E     
Sbjct: 501 YGDLDVTVLDELPPGRQPPRTLVLAGSDGRDRAHAMVRERLQAGERIFVVCPLVEPAEGE 560

Query: 494 -----------EKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGT 541
                      + +             L   F  + + ++HGRM   +++ VM  F+ G 
Sbjct: 561 RDAETAPADSLQGQAQARADATTTAERLQRTFAPARVGLVHGRMVQAERDRVMGDFRAGR 620

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+ATTVIEVG+DV +A++++I  A  FGLAQLHQLRGRVGRG   S C+L+     +
Sbjct: 621 VDILVATTVIEVGVDVPEATVMVILEAHCFGLAQLHQLRGRVGRGGGSSLCLLMTRRQRT 680

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
             +  RL+ +  T DGF IAEEDL+ R  GE+LG++QSG+P+        H +LL  AR 
Sbjct: 681 AEAEQRLATMAATCDGFRIAEEDLRLRGPGELLGVRQSGLPRLRFGDLRAHGALLVAARD 740

Query: 662 DAKHILTQDPDLTSVRG 678
            A+ +L  DP+L     
Sbjct: 741 AAETLLAADPELRDPAH 757


>gi|226941691|ref|YP_002796765.1| RecG [Laribacter hongkongensis HLHK9]
 gi|226716618|gb|ACO75756.1| RecG [Laribacter hongkongensis HLHK9]
          Length = 685

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 186/557 (33%), Positives = 304/557 (54%), Gaps = 14/557 (2%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
                 L+++         R  DL+ + P  + D      +        V + G I+   
Sbjct: 9   PATLKKLARL------GLVRRFDLVLHLPLRYEDETQLTPVRAARYGEPVMVEGEITA-Q 61

Query: 81  SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
             Q + R+     L D +G++ L F +     LK     G+++   G+++       MVH
Sbjct: 62  QVQYKPRKQLVATLADESGQLILRFLHFYPTHLKQ-LAVGQRVRAMGEVRHGYFGDEMVH 120

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200
           P              +  VY    G++  + +++I  AL R   L + + + +  +    
Sbjct: 121 PKIRDVTPDTPLADHLTPVYPAVQGVTQLMLRRLIAGAL-RDERLDDTLPEPMRHELGLV 179

Query: 201 SIAEAFNIIHNPRK----AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
             A+A  I+H P      A   +   PA +RL +DELLA Q+++ L  +  +      + 
Sbjct: 180 PFADAVRILHQPPARMPVAVLADGALPAWQRLKFDELLAQQLSMRLAYRARRAFAAPVLK 239

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             G++ + +L+ +PF  T++Q   + +I  D++Q + M R+LQGDVGSGKT+VA +A   
Sbjct: 240 GNGQLTRALLQALPFELTRAQARVMGEISHDLAQSHPMHRLLQGDVGSGKTVVAALAALI 299

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           A+EAG QA +MAP  ILA+QH+  +  +     I V  ++G++ +  ++ A+E +A G+A
Sbjct: 300 AIEAGWQAALMAPTEILAEQHHRKLAGWLAPLGIKVVWLSGSLKKKDKQAAIEAMASGEA 359

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            + IGTHALFQD + + +L LV++DEQHRFGV QRL LTQK   PH L M+ATPIPRTL 
Sbjct: 360 QLAIGTHALFQDGVSFTRLGLVLIDEQHRFGVGQRLALTQKGGEPHQLTMSATPIPRTLA 419

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           ++   D+D+S I E P GR PI+T +I  +R  +V+  ++  +  G++AYW+CP IEE +
Sbjct: 420 MSYFADLDVSVIDELPPGRTPIQTKLISTSRRHDVMAAIRKEIDAGRQAYWVCPLIEESE 479

Query: 497 ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
               ++ V  F  L E      + ++HGR+   +K +VM +F+    +LL+ATTVIEVG+
Sbjct: 480 TLELQNAVATFEELAESLPGIVVGLVHGRLKPDEKAAVMAAFQQNVVQLLVATTVIEVGV 539

Query: 556 DVVDASIIIIENAEHFG 572
           DV +A++++IE+AE  G
Sbjct: 540 DVPNATLMVIEHAERMG 556


>gi|291459590|ref|ZP_06598980.1| ATP-dependent DNA helicase RecG [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291417868|gb|EFE91587.1| ATP-dependent DNA helicase RecG [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 564

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 218/562 (38%), Positives = 318/562 (56%), Gaps = 14/562 (2%)

Query: 138 MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP------EWIEK 191
           M  P             + E VY    GLS    +K +  AL      P      +++ +
Sbjct: 1   MEQPKLFSREEYKKMQGVPEPVYPKSAGLSGQTIRKAVRAALLGFSEDPSPLHAFDFVPE 60

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
            L +++  P + E+ + +H P      E    ARER +Y+ELL   +ALL  +++   E 
Sbjct: 61  TLRRRRDLPGLYESLSAVHCPGSE---EEALLARERFSYEELLLFSLALLRRKRERSGER 117

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
              +  E   A++ L ++PFS T+ Q  AI++I  ++S    M R+LQGDVGSGKT+VA 
Sbjct: 118 SRFLLTERGEAERFLHSLPFSLTEGQREAIREIEGELSGGFVMNRLLQGDVGSGKTVVAF 177

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN--TQIIVEIITGNMPQAHRRKALE 369
            A+  A  +G QA +MAP  +LA+QHYE +++  +         ++TG++ +  +R+   
Sbjct: 178 YALFLAASSGFQAAMMAPTELLARQHYEKLREILKKISLPWEAALLTGSLSRGEKRELCR 237

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           RI  G+  +I+GTHALFQ+ I Y  L LV+ DEQ RFGV QR   ++K + PH+LL++AT
Sbjct: 238 RIEEGELRLILGTHALFQEGIHYPALSLVVTDEQQRFGVLQRKAFSEKGSRPHILLLSAT 297

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L    D+ +S+I  +PA R P+K  +I      +    L     +G++AY IC
Sbjct: 298 PIPRTLSLLLYQDMQVSRIPGRPAERLPVKNALIGAGERGKAWRFLAGECRKGRQAYIIC 357

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           P IE+  E   ++V E    L         I  +HGRM   +KE +M+SF      +L++
Sbjct: 358 PMIEDNGEPELQNVSEYQRKLRAFLPEGFRIEGLHGRMRAEEKERIMESFLRREIDILVS 417

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           TTV+EVG+DV +AS+I+IENAE FGLAQLHQLRGRVGR    S CILL     SK S  R
Sbjct: 418 TTVVEVGVDVPNASVILIENAERFGLAQLHQLRGRVGRSSLQSYCILL-DCKNSKKSRER 476

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           LSVL  + DGF IAEEDL+ R  GE+ GI+QSG  +F  A       L + A +DA  +L
Sbjct: 477 LSVLVRSNDGFWIAEEDLRLRGPGELFGIRQSGALQFRFADIYRDKELWKEASRDATELL 536

Query: 668 TQDPDLTSVRGQSIRILLYLYQ 689
            +DP L+  R + ++  L+ ++
Sbjct: 537 EEDPGLSEKRNEKLQKRLFDFE 558


>gi|227485071|ref|ZP_03915387.1| RecG family helicase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236904|gb|EEI86919.1| RecG family helicase [Anaerococcus lactolyticus ATCC 51172]
          Length = 663

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 187/632 (29%), Positives = 313/632 (49%), Gaps = 29/632 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L++ +G+G K +  LSK+      +     DL  Y+P  + DR  +  + + S  R    
Sbjct: 5   LTSLKGIGPKKAKALSKL------DIYTVRDLYTYYPREYEDRRIKASVLKASPTRSYYF 58

Query: 73  TGYISQHSSFQLQKRRP--YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130
                  +  +  K     Y         +I +++F  +  + K             K+ 
Sbjct: 59  EWKAISKAYVKRLKNMIVSYMYFAEGDFKKIRVIWFNDRFSIRK--IRLNETYKFYTKVA 116

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
                   V+P  IF N        I ++Y L +G+S       I EAL    V  + + 
Sbjct: 117 YKNGYYESVNP--IFENLDGDMIGAIYSMYPLTSGISQKNLNAFIKEALKEFDVREDILS 174

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE--RLAYDELLAGQIALLLMRKQFK 248
           K L ++ +     +A   +H P   +         +   L  + +    +  L   KQ  
Sbjct: 175 KSLKERFNLMDREKALKEVHFPSNLQTLFKAKTDIKIGDLLKELIFLDYLGKLQRNKQ-- 232

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
               I +  +    ++IL  + FS T+SQ  ++K+IL+D  +   M R+L GDVGSGKT+
Sbjct: 233 ---DISLKYD---LKEILAKLSFSLTRSQLRSLKEILEDSDKDISMNRLLIGDVGSGKTI 286

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA+++M        QA +M P  +LA Q YE  K +     + + ++TG+       +  
Sbjct: 287 VAMVSMLVFGLNSYQAAMMVPTEVLAIQQYEKYKDFIGGFGLKLALLTGSSKNKE--EIK 344

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           E +  G   +++GTHAL ++ +++  L LV+ DEQHRFGV+QR +L +K    + L MTA
Sbjct: 345 EGLRDGTIDMVVGTHALIEEDVKFRNLRLVVNDEQHRFGVRQRQELAKKGIDANYLTMTA 404

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL L     +D+S I E P GR  + T I+  +  + + E +K  L  G++ Y +
Sbjct: 405 TPIPRTLSLRINKMLDLSIINELPKGRASVITSIVNEDHQEFLFENIKEGLKAGRQVYVV 464

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              I+ +  ++  ++ +++  + +  T  +  +HG++    KE ++  F N    +LI+T
Sbjct: 465 SNNIDAEDTNSVENLYKKYKKIFK--THRVEKLHGKLKASLKEEILKKFNNHEIDILIST 522

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVGIDV +A+ ++I N+ +FGL+QLHQLRGRVGRGE  S C L+       N  ++L
Sbjct: 523 TVIEVGIDVANANTMVIYNSNNFGLSQLHQLRGRVGRGEYDSYCYLV---SKDVNPKSKL 579

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
            +L ++ DGF I+++D + R  G+IL + Q G
Sbjct: 580 KILVDSNDGFEISQKDYELRGGGKILSLIQHG 611


>gi|302796276|ref|XP_002979900.1| hypothetical protein SELMODRAFT_444354 [Selaginella moellendorffii]
 gi|300152127|gb|EFJ18770.1| hypothetical protein SELMODRAFT_444354 [Selaginella moellendorffii]
          Length = 931

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 212/720 (29%), Positives = 353/720 (49%), Gaps = 73/720 (10%)

Query: 33  CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR-PYK 91
                      LL + P + +   +      + + + V + G I    + +++      +
Sbjct: 216 LQENGFYTARSLLNHFPRAHV--SFESPTDTLEDGQSVALFGTIVMTRASKIKDTLAMLE 273

Query: 92  ILL------------NDGTGE----ITLLFFYRKTEMLKNVF--------FEGRKITVTG 127
           +++            +D   E    + +  F++      + F         EG K  V+G
Sbjct: 274 VIVNCKIAQECLRPCDDEVDENTVFLHIKRFFQGPRFTSSWFLNKTASGYPEGSKAAVSG 333

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLIE------AVYSLPTGLSVDLFKKIIVEALSR 181
           K+K +  +   +   Y        +F  +        VYS    L+    +  I   L  
Sbjct: 334 KVKAMNRKSHFLLKEYAVKVIDGEDFDQLRNDGEAYPVYSSKGLLNPKKIQVFIQRLLKG 393

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           LP   + +  ++  K    SI +A++ +H P      +  + AR R+ +D+    Q+A L
Sbjct: 394 LPTDIDPLPTEVRDKYDLLSIEQAYSTLHQPTN---LQGANVARRRIVFDDYFYLQLAFL 450

Query: 242 LMR---KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L R   +       + ++    ++ K+L  +PF  T  Q  A  +I+ D+ Q+  M R+L
Sbjct: 451 LQRNCLRGSTVNNELEMDKWSSLSLKVLNALPFKLTAGQIKAASEIMWDLRQQAPMSRLL 510

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT----QIIVEI 354
           QGDVG GKT+VA +A+   V +G QA +MAP   +  QHY+    + +      +  + +
Sbjct: 511 QGDVGCGKTIVAFLALLDVVSSGYQAALMAPTDFVVSQHYKQFLSWLEVLDEKDRPKIAL 570

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           ++G++     R   E IA+ +  +I+GTHAL  +S  +  L L ++DEQHRFGV QR +L
Sbjct: 571 LSGSLSAGEARLVREGIANREISLILGTHALISNSTNFPALGLAVIDEQHRFGVGQRDRL 630

Query: 415 T--------------------QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
                                + A+  HVLLM+ATPIPR+L LT  GD+ +S+I E P G
Sbjct: 631 KTAHASEAVEPDLDDADLERARLASTTHVLLMSATPIPRSLALTCHGDMSLSQINEIPPG 690

Query: 455 RKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-RSVVERFNSLH 511
           R+P+ T ++P +        E ++  L  G +A+++ P I E       R+ V  F+ + 
Sbjct: 691 RQPVDTYVLPDDEGGRRRAYELVRAELENGGRAFFVYPLINESSSFEHQRAAVTEFDKVV 750

Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           + F     A+ HGRM    +   +  F+ G C++L+AT V+EVGIDV +A++++IE+AE 
Sbjct: 751 KEFKDYKCALAHGRMKPDLRNQELKRFREGECQILVATKVVEVGIDVPEATVMLIESAEG 810

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           +GLAQLHQLRGRVGRG   S CILL        +  RL +L++T DGF +AEEDLK R  
Sbjct: 811 YGLAQLHQLRGRVGRGTRKSFCILLTCCD---TAVERLKLLESTTDGFRLAEEDLKMRGP 867

Query: 631 GEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           G++LG +QSG   +F++A+    + +L  AR  A+ +L  D +L   R   ++  + + Q
Sbjct: 868 GDLLGKRQSGTHLEFVLARLGEDNDILLQARAAAEELLETDKNLE--RHSKVKHEINIRQ 925


>gi|257457590|ref|ZP_05622757.1| ATP-dependent DNA helicase RecG [Treponema vincentii ATCC 35580]
 gi|257444976|gb|EEV20052.1| ATP-dependent DNA helicase RecG [Treponema vincentii ATCC 35580]
          Length = 641

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 199/624 (31%), Positives = 310/624 (49%), Gaps = 63/624 (10%)

Query: 112 MLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLF 171
            L+  F EG K  V G        I             D     +  VY L  GL+    
Sbjct: 19  FLEKSFPEGTKALVYGSFSVKYGAIQSSSFDI---EQYDTAERRVLPVYPLTQGLTQTKL 75

Query: 172 KKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIH-------------------- 210
           +K+I +AL+     +   +  ++L K  +P        +H                    
Sbjct: 76  RKLIEQALNSYARGIDSELPAEVLNKYGYPDKRTVLFAMHRPASMQEAENARTALIFEEF 135

Query: 211 ------------------------------NPRKAKDFEWTSPARERLAYDELLAGQIAL 240
                                          P +  + +  +    +    +  A +   
Sbjct: 136 FLYEAAVGMRALERRGVLPRTPGAKGQGSVFPAQTANGDGQAAGDGQATAVQAGASEDTA 195

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L   Q    +    +    + ++++  +PF+ T  Q++   +I  D+       R++QG
Sbjct: 196 QLAAVQPSAALQYTYSP---LQKELILRLPFTLTADQQAVTAEINADLDGTAPAARLIQG 252

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKTLVA +A    +E GGQAV+MAP  +LA+QH +   K  +   + +  +TGN+ 
Sbjct: 253 DVGSGKTLVAFLACLKVIEGGGQAVLMAPTELLARQHADNAAKLLEPLGVRLAFLTGNLK 312

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK--- 417
            A R + L+++A G   +IIGTHALF     Y  L +V++DEQHRFGV QR  + QK   
Sbjct: 313 AAGRSQLLQQLASGNIDLIIGTHALFSAQTLYKNLRMVVIDEQHRFGVLQRSAIIQKGID 372

Query: 418 --ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
               APH L+M+ATPIPRTL L+  GD+DIS I   P GRKP+ T + P ++ ++V   +
Sbjct: 373 SGKKAPHFLMMSATPIPRTLALSMFGDLDISVIKTMPPGRKPVITYVAPESKAEKVYYFI 432

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVM 534
              +  GK+AY++ P IE+ +  + +S  + F  L   F    +A++H ++ + +  ++M
Sbjct: 433 GQDILAGKQAYFVYPIIEDSETLSLKSAEDMFAELSRDFPHHRLALLHSKVPEDEARAIM 492

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F+ G   +L+AT+VIEVG+DV +A+ ++IE+A+ FGL+ LHQLRGR+GRG + + C L
Sbjct: 493 QEFRAGAIHILVATSVIEVGVDVPNATCMVIEHADRFGLSALHQLRGRIGRGSDQAYCFL 552

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           LY   +++    RL V+ +T DGF+IAEEDLK R  G+I G++QSG   F +  P    +
Sbjct: 553 LYGKNITETGKARLKVMASTTDGFVIAEEDLKLRGPGDIGGVEQSGYCGFELGDPIRDFA 612

Query: 655 LLEIARKDAKHILTQDPDLTSVRG 678
           LLE AR  A  +L     LT   G
Sbjct: 613 LLEKARAAAFEMLAAQRGLTQHEG 636


>gi|41409107|ref|NP_961943.1| hypothetical protein MAP3009c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397927|gb|AAS05557.1| RecG [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 738

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 212/719 (29%), Positives = 350/719 (48%), Gaps = 73/719 (10%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYI 76
           VG K +  L ++            DLL ++P S+ +   R    +        +TI   I
Sbjct: 12  VGAKAAEQLEEL-----FGIRTVDDLLRHYPRSYTEGASRWGADDERPPAGEHITIIDTI 66

Query: 77  SQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
           ++  ++ ++K      ++I L  G  ++T  FF      LK    EG K+ ++G++   K
Sbjct: 67  TETKTWPMKKTPKKVCHRITLGAGRNKVTATFFNAN--YLKKGLTEGTKVMLSGEVGFFK 124

Query: 134 NRIIMVHPHYIFHNSQDVNFPLIE-------------------------AVYSLPTGLSV 168
           N + + HP ++  +S D                                 +Y   T +  
Sbjct: 125 NVMQLTHPAFLILDSPDGRNKGTRSLKNIANASGASGEAVLDAYERHFFPIYPASTKMQS 184

Query: 169 DLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
                 +   L  L  +P+ + + L  K       +A   I     A++      ARERL
Sbjct: 185 WDIFSCVRLVLDVLDPVPDPLPEPLRAKFDLVCEDQALRDI---HLAENEARRQRARERL 241

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQD 287
            +DE +  Q AL+  R     E G P        A ++LR +PF  T  Q   +  +   
Sbjct: 242 TFDEAVGLQWALVARRHGELSESGPPAPPRPDGLAAELLRRLPFELTAGQREVLDVLSDG 301

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           ++    + R+LQG+VGSGKT+V+++AM   V+AG Q  ++AP  +LA QH   I+     
Sbjct: 302 LASTRPLNRLLQGEVGSGKTIVSVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGP 361

Query: 348 TQI-----------IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
             +            + +++G+M  A +++  + +A GQ  I++GTHAL QD+++++ L 
Sbjct: 362 LAMAGQLGGADNATRLALLSGSMTAAQKKQVRDEVAGGQVGIVVGTHALLQDAVEFHNLG 421

Query: 397 LVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E P 
Sbjct: 422 MVVVDEQHRFGVEQRDRLRAKARPGVTPHLLVMTATPIPRTVALTVYGDLETSTLRELPR 481

Query: 454 GRKPIKTVIIPINRID----EVIERLKVVLSEGKKAYWICPQIEEKK----ESNFRSVVE 505
           GR+PI + +I +            R+   ++ G++AY +  +I+E              E
Sbjct: 482 GRQPITSNVIFVKDKPAWLGRAWRRIGEEVAAGRQAYVVAARIDESDDDGAADQNAKAPE 541

Query: 506 RFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
               L+    S       + ++HGR+S  +K++VM +F+ G   +L+ TTVIEVG+DV +
Sbjct: 542 TAEGLYARLRSQELAQLRLGLMHGRLSAEEKDAVMAAFRAGDIDVLVCTTVIEVGVDVPN 601

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A+++++ +A+ FG++QLHQLRGR+GRGE  S C+          +  RL+ +  T DGF 
Sbjct: 602 ATVMLVMDADRFGISQLHQLRGRIGRGEHPSLCLFASWAAPDSPAGRRLTAVAETMDGFA 661

Query: 620 IAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQ---DPDLT 674
           +A+ DLK+R+EG++LG  QSG      +     H   +E AR            DP L+
Sbjct: 662 LADLDLKERREGDVLGRNQSGRAVTLRLLSLADHQEYIEAARDFCVQAYAGNRFDPGLS 720


>gi|186498546|ref|NP_178253.3| ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/
           helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|330250357|gb|AEC05451.1| ATP-dependent DNA helicase RecG [Arabidopsis thaliana]
          Length = 973

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 216/760 (28%), Positives = 356/760 (46%), Gaps = 99/760 (13%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   + +  G+ K++S  L       +        LL + P ++ D        +I + +
Sbjct: 217 LATSIDSMPGLSKRHSNQL------DSCGFHTMKKLLHHFPRTYADLQNAQ--VDIEDGQ 268

Query: 69  IVTITGYISQHSSFQLQKR-RPYKILLN------------------DGTGE---ITLLFF 106
            +   G +      +        +++++                  D  G+   + L  F
Sbjct: 269 YLIFVGKVLSSKGVRASSSFSFLEVIVSCEVSGRDRTPEDLSHNAEDKAGKSIFLHLKKF 328

Query: 107 YRKTEM--------LKNVFFEGRKITVTGKIKKLK--NRIIMVHPHYIFHNSQDVNFPLI 156
           +R T          ++     G  + ++GK+K L+  +   M   +      ++ +    
Sbjct: 329 FRGTRFTWQPFLNSIQEKHKVGDLVCISGKVKSLRAEDHFEMREYNIDVLKDEEESSHRA 388

Query: 157 E----AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
           +     +Y    GL+      +I  AL  LP   + I K++ +    PS+ +A+  IH P
Sbjct: 389 QGRPYPIYPSKGGLNPKFLSDVISRALRVLPANMDPIPKEITKVFGLPSLNDAYVGIHEP 448

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLM----------------RKQFKKEIGIPIN 256
           +   + +     R+RL +DE    Q+A L                  + +      + I 
Sbjct: 449 KTLDEADLA---RKRLIFDEFFYLQLARLYQMLQSLGTKIEKDVLLEKFRKPVLNSVYIE 505

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
               + +  L+ +P+S T SQ SA+ +I+ D+ +   M R+LQGDVG GKT+VA +A   
Sbjct: 506 EWSTLTKSFLKALPYSLTPSQLSAVSEIIWDLKRPVPMNRLLQGDVGCGKTVVAFLACME 565

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-----QIIVEIITGNMPQAHRRKALERI 371
            + +G QA  MAP  +LA QHYE  +   +N      +  + ++TG+ P    R   + +
Sbjct: 566 VIGSGYQAAFMAPTELLAIQHYEQCRDLLENMEGVSSKPTIGLLTGSTPAKQSRMIRQDL 625

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR-------------------- 411
             G    IIGTH+L  + I+Y  L + +VDEQ RFGV QR                    
Sbjct: 626 QSGAISFIIGTHSLIAEKIEYSALRIAVVDEQQRFGVIQRGKFNSKLYGTSMISKSGSSD 685

Query: 412 ---LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR- 467
                    + APHVL M+ATPIPR+L L   GDI +++IT  P GR P++T I   N  
Sbjct: 686 SDDTSKADLSMAPHVLAMSATPIPRSLALALYGDISLTQITGMPLGRIPVETHIFEGNET 745

Query: 468 -IDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFT-SSIAIIHGR 524
            I EV   +   L  G + Y + P I++ ++    R+       + + F   +  ++HGR
Sbjct: 746 GIKEVYSMMLEDLKSGGRVYVVYPVIDQSEQLPQLRAASAELEIVTKKFPKYNCGLLHGR 805

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   DKE  ++ F++G  ++L++T VIE+G+DV DAS++++ NAE FG+AQLHQLRGRVG
Sbjct: 806 MKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVG 865

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPK 643
           RG   S C+L+     S NS  RL++L  + DGF +A  DL  R  G++LG KQSG +P+
Sbjct: 866 RGTRKSKCLLVGS---STNSLKRLNMLGKSSDGFYLANIDLLLRGPGDLLGKKQSGHLPE 922

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           F +A+ E+  ++L+ A   A ++L    DL         +
Sbjct: 923 FPVARLEIDGNMLQEAHIAALNVLGDSHDLEKFPALKAEL 962


>gi|118462797|ref|YP_882989.1| ATP-dependent DNA helicase RecG [Mycobacterium avium 104]
 gi|118164084|gb|ABK64981.1| ATP-dependent DNA helicase RecG [Mycobacterium avium 104]
          Length = 738

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 212/719 (29%), Positives = 349/719 (48%), Gaps = 73/719 (10%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYI 76
           VG K +  L ++            DLL ++P S+ +   R    +        +TI   I
Sbjct: 12  VGAKAAEQLEEL-----FGIRTVDDLLRHYPRSYTEGASRWGADDERPPAGEHITIIDTI 66

Query: 77  SQHSSFQLQKRRP---YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLK 133
           ++  ++ ++K      ++I L  G  ++T  FF      LK    EG K+ ++G++   K
Sbjct: 67  TETKTWPMKKTPKKVCHRITLGAGRNKVTATFFNAN--YLKKGLTEGTKVMLSGEVGFFK 124

Query: 134 NRIIMVHPHYIFHNSQDVNFPLIE-------------------------AVYSLPTGLSV 168
           N + + HP ++  +S D                                 +Y   T +  
Sbjct: 125 NVMQLTHPAFLILDSPDGRNKGTRSLMNIANASGASGEEVLDAYERHFFPIYPASTKMQS 184

Query: 169 DLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
                 +   L  L  +P+ + + L  K       +A   I     A+       ARERL
Sbjct: 185 WDIFSCVRLVLDVLDPVPDPLPEPLRAKFDLVCEDQALRDI---HLAESEARRQRARERL 241

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQD 287
            +DE +  Q AL+  R     E G P        A ++LR +PF  T  Q   +  +   
Sbjct: 242 TFDEAVGLQWALVARRHGELSESGPPAPPRPDGLAAELLRRLPFELTAGQREVLDVLSDG 301

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           ++    + R+LQG+VGSGKT+V+++AM   V+AG Q  ++AP  +LA QH   I+     
Sbjct: 302 LASTRPLNRLLQGEVGSGKTIVSVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGP 361

Query: 348 TQI-----------IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
             +            + +++G+M  A +++  + +A GQ  I++GTHAL QD+++++ L 
Sbjct: 362 LAMAGQLGGADNATRLALLSGSMTAAQKKQVRDEVAGGQVGIVVGTHALLQDAVEFHNLG 421

Query: 397 LVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E P 
Sbjct: 422 MVVVDEQHRFGVEQRDRLRAKARPGVTPHLLVMTATPIPRTVALTVYGDLETSTLRELPR 481

Query: 454 GRKPIKTVIIPINRID----EVIERLKVVLSEGKKAYWICPQIEEKK----ESNFRSVVE 505
           GR+PI + +I +            R+   ++ G++AY +  +I+E              E
Sbjct: 482 GRQPITSNVIFVKDKPAWLGRAWRRIGEEVAAGRQAYVVAARIDESDDDGAADQNAKAPE 541

Query: 506 RFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
               L+    S       + ++HGR+S  +K++VM +F+ G   +L+ TTVIEVG+DV +
Sbjct: 542 TAEGLYARLRSQELAQLRLGLMHGRLSAEEKDAVMAAFRAGDIDVLVCTTVIEVGVDVPN 601

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           A+++++ +A+ FG++QLHQLRGR+GRGE  S C+          +  RL+ +  T DGF 
Sbjct: 602 ATVMLVMDADRFGISQLHQLRGRIGRGEHPSLCLFASWAAPDSPAGRRLTAVAETMDGFA 661

Query: 620 IAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQ---DPDLT 674
           +A+ DLK+R+EG++LG  QSG      +     H   +E AR            DP L+
Sbjct: 662 LADLDLKERREGDVLGRNQSGRAVTLRLLSLADHQEYIEAARDFCVQAYAGNRFDPGLS 720


>gi|23013788|ref|ZP_00053646.1| COG1200: RecG-like helicase [Magnetospirillum magnetotacticum MS-1]
          Length = 484

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 184/465 (39%), Positives = 279/465 (60%), Gaps = 7/465 (1%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP  L PLFAP+++  G+G + +    +++        + +DLL++ P+  +DR + PK
Sbjct: 1   MRPQVLFPLFAPVTSLPGIGPRLAPLYQRLVG------EKVLDLLWHLPAGVVDRRFAPK 54

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           ++E    ++ T+T  +  H       +RPY++ + D TG + L+FF+ + + L+    EG
Sbjct: 55  VAEAPHGKVATLTLRVDAHYP-SSSPKRPYRVRMADETGFLHLVFFHGREDWLRKQLPEG 113

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
               V+G ++   N I + HP +I    +      +E VY L  GL+     K +  A++
Sbjct: 114 EIRVVSGVVEHFNNEIQISHPDHIVRLEEIAQVMAVEPVYGLTAGLTGRAVAKTVAAAVA 173

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           + P LPEW E   L ++ +P   EA   +H+P         +PAR RLA+DELLA Q+AL
Sbjct: 174 KAPQLPEWQEPHWLVRQGWPGWHEALTAVHHPADEHSALGDTPARRRLAFDELLANQLAL 233

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            ++R Q +K  G  +  +G +  K+L  +P++ T +Q  ++ +I  DM+Q  RMLR+LQG
Sbjct: 234 AMVRAQMRKLKGRSLVGDGSLRAKVLAALPYTLTGAQSRSLAEIDADMAQPMRMLRLLQG 293

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VAL+AM  AVE G QA +MAP  ILA+QHY  I    +   + V ++TG   
Sbjct: 294 DVGSGKTIVALLAMLTAVETGAQAAMMAPTEILARQHYAGIAPLAEAAGLRVALLTGRDK 353

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R   L  +A G+ HI++GTHALFQ+ + +  L L ++DEQHRFGV QRL+L  K  A
Sbjct: 354 GKSREAVLAGLASGEIHILLGTHALFQEDVAFKDLALAVIDEQHRFGVHQRLELAAKGVA 413

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
             +L+MTATPIPRTL+LT+ GD+D S++ EKP GRKPI T ++P 
Sbjct: 414 VDMLVMTATPIPRTLLLTAYGDMDASRLDEKPPGRKPIDTRVVPW 458



 Score = 38.5 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI-EVGIDVVD 559
           R        L E     +A++ GR     +E+V+    +G   +L+ T  + +  +   D
Sbjct: 328 RQHYAGIAPLAEAAGLRVALLTGRDKGKSREAVLAGLASGEIHILLGTHALFQEDVAFKD 387

Query: 560 ASIIIIENAEHFGLAQLHQL 579
            ++ +I+    FG   +HQ 
Sbjct: 388 LALAVIDEQHRFG---VHQR 404


>gi|317506526|ref|ZP_07964323.1| ATP-dependent DNA helicase RecG [Segniliparus rugosus ATCC BAA-974]
 gi|316255165|gb|EFV14438.1| ATP-dependent DNA helicase RecG [Segniliparus rugosus ATCC BAA-974]
          Length = 760

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 192/710 (27%), Positives = 338/710 (47%), Gaps = 87/710 (12%)

Query: 38  ETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK---RRPYKILL 94
                +LL ++P  +                 VT+   + + S  + +    ++   + +
Sbjct: 28  IATVGELLRHYPRDYARPGQLLGNRLAQVGEHVTLIAEVRKKSVMRFKNDPSKKRMVLSV 87

Query: 95  NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP 154
           +DG     ++FF    +  +    EG++    G++    N++ + HP +I     D    
Sbjct: 88  SDGINVYEVVFFN-PKKWTQEKLEEGQRYMFDGEVSMYANKLQLAHPGFILLPDPDAREQ 146

Query: 155 LIE------------------------------------AVYSLPTGLSVDLFKKIIVEA 178
            ++                                    AVY     +S    ++ +   
Sbjct: 147 GVQEPGAGKITGVGQIAAYARSVDPSLQLDPSEWRSELMAVYPASKNVSSWDVRRYVEAV 206

Query: 179 LSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
           L +L  +P+ + + +  ++ F  + E+   +H P      +  + A++RL +DE LA Q+
Sbjct: 207 LDQLAPVPDPLTEAMRAERGFLGLEESLRAVHTPESQ---DQVNRAKDRLRFDEALAVQL 263

Query: 239 ALLLMRKQFKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           A    R    K   +           K    +PF  T+ Q +A  +I  D++    M R+
Sbjct: 264 AFAKRRAALAKAKALACQPLADGKVAKFEARLPFQLTEDQRAARDEIDADLATSKPMSRL 323

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-----------YTQ 346
           + G+VGSGKT+V+L+AM   V+AG Q  ++AP  +LA QH+  ++K              
Sbjct: 324 VHGEVGSGKTVVSLLAMLRVVDAGAQCAMLAPTEVLAAQHHATLRKLLGPLGRGGELDGD 383

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
              + + ++TG+M  A R+ AL ++  G+A I++GTHAL  + + +  L L++VDEQHRF
Sbjct: 384 PDGLKIVLLTGSMGAAARKAALAQVVSGEASIVVGTHALLSEKVMFADLGLLVVDEQHRF 443

Query: 407 GVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           GV QR  L  +      PH+L+MTATPIPRT+ +T  G++++S I   P  R  I + ++
Sbjct: 444 GVDQRDALRGRGVDGRLPHLLVMTATPIPRTVAMTVFGELEVSTIKHLPKNRAGISSSVV 503

Query: 464 PINR----IDEVIERLKVVLSEGKKAYWICPQIEE--------------------KKESN 499
              R    +  V ER++   +EG++AY +C +I++                    K    
Sbjct: 504 DEKRKPDWVRRVWERMREEAAEGRQAYVVCARIQDKEKEEEKKPAKAKPKPAPEQKGPPP 563

Query: 500 FRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            R+VV+ F  L     +   + ++HG +   +K+  M SF +G  ++L++TTVIEVG+DV
Sbjct: 564 PRAVVDVFEELSSGPLAGLRLGLMHGGLPPAEKDKAMASFASGETQVLVSTTVIEVGVDV 623

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            ++++++I +A+ FG++QLHQLRGRVGRG     CI +        S  RL  + +  DG
Sbjct: 624 PNSTMMVILDADRFGISQLHQLRGRVGRGGHPGLCIFVTRA--GGASLDRLQSVASCMDG 681

Query: 618 FLIAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLLEIARKDAKHI 666
           F +AE DLK R EG+++G+ QSG      +      + ++  AR+ A  +
Sbjct: 682 FELAELDLKIRGEGDVIGVAQSGRSRSLRLLSVTRDEEIIADAREVADAL 731


>gi|325661174|ref|ZP_08149801.1| hypothetical protein HMPREF0490_00534 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472681|gb|EGC75892.1| hypothetical protein HMPREF0490_00534 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 533

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 188/522 (36%), Positives = 303/522 (58%), Gaps = 10/522 (1%)

Query: 166 LSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR 225
           ++ +   K + +AL  L +  E +   +  K        +   IH P++ ++F     AR
Sbjct: 1   MTNNAVMKAVRQALDYLELQKEILPATVRMKYHLAEYNFSVRGIHFPKEKQEF---YQAR 57

Query: 226 ERLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
           ERL ++E L   ++L  M+ K+ +     P++   +  +  L+ +P+  T +Q+   + +
Sbjct: 58  ERLVFEEFLVFILSLRQMKEKKERSRNQFPVHP-SEEIEVFLKKLPYELTNAQKKVWEQL 116

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
            +DM+  + M R++QGDVGSGKT++A++++ +    G Q  +MAP  +LA+QH++ I + 
Sbjct: 117 QKDMAGTHTMARLIQGDVGSGKTIIAVLSLMSVAFCGWQGAMMAPTEVLARQHFDSITEM 176

Query: 345 TQNTQI--IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
            +  +I   VE++TG+M    +R A  RI  GQA II+GTHAL Q+ + Y  L LV+ DE
Sbjct: 177 FEQYEIPLKVELLTGSMTAKEKRLAYGRIESGQAQIIVGTHALIQEKVIYANLALVVTDE 236

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           QHRFGV+QR +   K   PH+L+M+ATPIPRTL +   GD+D+S I E PA R PIK  +
Sbjct: 237 QHRFGVKQREQFAGKGELPHILVMSATPIPRTLAIILYGDLDVSVIDELPANRLPIKNCV 296

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI-- 520
           +  +      + ++  ++EG++ Y ICP +EE +     +V++    L       I +  
Sbjct: 297 VDTSYRKTAYQFIRRQVAEGRQCYVICPMVEESEHLEAENVIDYAEKLQGELGEDIIVDF 356

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HG+M    K+ +M+ F     ++L++TTVIEVGI+V +A++++IENAE FGLAQLHQLR
Sbjct: 357 LHGKMKQSQKDEIMERFGKNESQVLVSTTVIEVGINVPNATVMMIENAERFGLAQLHQLR 416

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG+  S CI +      K +  RL +L  + DGF IA EDLK R  G++ GI+QSG
Sbjct: 417 GRVGRGKYQSYCIFMSGSK-GKETKERLEILNRSNDGFYIANEDLKLRGPGDLFGIRQSG 475

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           +  F +        +L+ A + A  IL     L     ++++
Sbjct: 476 LMDFRLGDVFQDAKILQRANEAADWILKNGKGLEEEACRNLK 517


>gi|254674059|emb|CBA09843.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha275]
          Length = 488

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 198/467 (42%), Positives = 286/467 (61%), Gaps = 3/467 (0%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           + T PA +RL +DELLA Q+++ L R++        +  +G + Q + + +PF+ T +QE
Sbjct: 15  DGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAALGGDGTLTQALRQALPFALTDAQE 74

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + +I +DM+Q   M R+LQGDVGSGKT+VA ++   A+E+G Q  +MAP  ILA+QH+
Sbjct: 75  KVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEILAEQHF 134

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              K++ +   I V  + G++ +  + +A  ++A G   I +GTHALF D + ++ L L 
Sbjct: 135 IKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIAVGTHALFSDGVAFHNLGLT 194

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++   D+D+S I E P GR PI
Sbjct: 195 IVDEQHRFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPI 254

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
           KT ++   R  EV   +     +G++AYW+CP IEE +    ++  E    L       +
Sbjct: 255 KTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQLQTATETLEQLQTALPELN 314

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+DV +A++++IE+AE  GLAQLH
Sbjct: 315 IGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMGLAQLH 374

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG   S C+LL+  PL + +  RL V+    DGF IA +DL  R  GE LG +
Sbjct: 375 QLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGAR 434

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           QSG+P    A+ E    LLE AR+ A  ++ Q+P++  V     R L
Sbjct: 435 QSGVPMLRFAKLEEDLHLLEQARETAPMLIEQNPEI--VEAHLARWL 479


>gi|227501790|ref|ZP_03931839.1| RecG family helicase [Corynebacterium accolens ATCC 49725]
 gi|227077815|gb|EEI15778.1| RecG family helicase [Corynebacterium accolens ATCC 49725]
          Length = 708

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 223/709 (31%), Positives = 363/709 (51%), Gaps = 75/709 (10%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
           KK +  ++K +      E     LL ++P  +I  +    + + +E  IVTITG ++  +
Sbjct: 16  KKDATKITKALGYKTCGE-----LLAHYPRDYIRHNQDVGLGDAAEGDIVTITGTVTGIT 70

Query: 81  SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
           +    K     + L+   G I   FF      +  +   G+++ ++GK+K  + +  +  
Sbjct: 71  TRDTGKTTIINVQLD---GHIIATFFN--AMYVLRMLHRGQRVMMSGKLKYFRQQPQLQQ 125

Query: 141 PHYIFHNS---QDVNFPLIE-----------------------------------AVYSL 162
           P ++  ++    D      +                                    VY  
Sbjct: 126 PDFVEIDAFGRPDGELAAYQAPAAGKKKPQKATGSLRNLSQFGRLDKLLLEREWIPVYPA 185

Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222
              ++       I   L+  P + E +++ ++      S+ +A   IH P  A       
Sbjct: 186 TAKITSWYLMGAIHYVLAHTPTIREPLDQQMI-----ISLDQAVREIHEPGAA----GPQ 236

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAI 281
            A +RL Y+E L+  + + L ++         +    G   +++L ++PF  T+ Q   I
Sbjct: 237 RAVQRLKYNEALSIGLVMALRQRDAHAHTAPAMPAILGGFREELLTHLPFELTQGQRRVI 296

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +I  D+S    M+R+LQG+VGSGKT+VA  AM  A++AG QA ++AP  +LA QH   I
Sbjct: 297 TEIDDDLSGSLPMMRLLQGEVGSGKTMVATCAMLQAIDAGSQAALLAPTEVLASQHAASI 356

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
              +    + V ++TG+M  A +R+AL  I  G+A+I+IGTHA+ Q+S++++ L LVIVD
Sbjct: 357 G-TSVPEGVKVVLLTGSMRTAEKRQALLDIVSGEANIVIGTHAIIQESVEFFDLGLVIVD 415

Query: 402 EQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           EQHRFGV+QR  L  K      PHVL+MTATPIPRT+ +T  GD+ +S + E P GRKPI
Sbjct: 416 EQHRFGVEQRDSLRSKTREGISPHVLVMTATPIPRTIAMTIFGDLAVSTLAELPGGRKPI 475

Query: 459 KTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           ++ ++   R   +   +ER++  ++ G +AY +CP+IE         V+E    L     
Sbjct: 476 QSAVVAEWRPIWVARALERIREEVAHGHQAYIVCPRIE-----GEGGVLELAEQLAAGPF 530

Query: 516 S--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               + I+HG+M +  K+ VM SF  G   +L++TTVIEVG+DV +A++++I  AE+FG+
Sbjct: 531 KGLRVDILHGKMPN--KDEVMTSFARGEIDILVSTTVIEVGVDVPNATVMLIREAENFGV 588

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           +QLHQLRGRVGRG   S C+L      +  SY R++ +  T  GF +AE DL+QR EG+I
Sbjct: 589 SQLHQLRGRVGRGGNASICLLHTKAEDNSASYRRITQIAQTSSGFDLAELDLRQRHEGDI 648

Query: 634 LGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           LG  QSG      +        ++E    DA  ++ ++P L     Q++
Sbjct: 649 LGAVQSGTHRTLRLLNLADDQDIVERTHADAYAMVQRNPQLAEELTQNL 697


>gi|296393416|ref|YP_003658300.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296180563|gb|ADG97469.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 764

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 187/705 (26%), Positives = 328/705 (46%), Gaps = 91/705 (12%)

Query: 37  NETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ---KRRPYKIL 93
                 +LL ++P  +                 VTI   +   +  + +   ++    + 
Sbjct: 27  GIASVGELLRHYPRDYARPGQLLGNRLAQVGEHVTIIAEVIDKALLRFKSDPRKMRMVLK 86

Query: 94  LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF 153
           ++DGT    ++FF    +  +    +G++    G++    +++ + HP +I         
Sbjct: 87  VSDGTNVYEVVFFN-PKKWTQEKLNKGQRYMFDGEVSTYGSKLQLAHPGFILLPDAPAAV 145

Query: 154 -----------------------------PLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
                                          + AVY     +S    ++ I   L RL  
Sbjct: 146 DGKVTGSGQIAAYARSVDPELQLDPSEWRSELMAVYPASKNVSSWDLRRHIGTVLDRLAP 205

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + + + + +  ++ F  + +A   +HNP+     E  + A+ RL +DE LA Q A    R
Sbjct: 206 IEDPLTESMRAQRGFLGLEQALRAVHNPQS---VEQVAAAQARLRFDEALAVQFAFAKRR 262

Query: 245 KQFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
                   +      +    K    +PF  T+ Q++   +I  D+++   M R+L G+VG
Sbjct: 263 AALAHATALACPPSPQGSVAKFESRLPFQLTEDQQAVRCEIDADLAKPVPMSRLLHGEVG 322

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-----------YTQNTQIIV 352
           SGKT+V+L+AM   ++AG Q  ++AP  +LA QH+  ++K                 + +
Sbjct: 323 SGKTVVSLLAMLRVIDAGCQCALLAPTEVLAAQHHATLRKLLGPLGRGGELDGDPDGLRI 382

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+M  A R+ AL ++A G+A+I+IGTHAL  + + +  L LV+VDEQHRFGV QR 
Sbjct: 383 VLLTGSMGAAARKAALAQVASGEANIVIGTHALLSEKVVFADLGLVVVDEQHRFGVDQRD 442

Query: 413 KLT---QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
            L         PH+L+MTATPIPRT+ +T  G++++S I   P  R  + + ++   R  
Sbjct: 443 ALRGRGAGGRLPHLLVMTATPIPRTVAMTVFGELEVSTIKRLPTNRAGVTSSVVDEKRKP 502

Query: 470 E----VIERLKVVLSEGKKAYWICPQIEEKKESNF------------------------- 500
           E      ER++  +S G++AY +C +I++                               
Sbjct: 503 EWLRRAWERVREEVSAGRQAYVVCARIQDPGAQEKDSDAAKDKKTGAAKKPAKPKQPEEK 562

Query: 501 ------RSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 R+ V+    L     + +   ++HG +   +K+  M SF  G  ++L++TTVIE
Sbjct: 563 KGPPPPRAAVDVHAELSGGALAGVRLGLMHGALPAAEKDQAMASFSAGETQVLVSTTVIE 622

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV +++++++ +A+ FG++QLHQLRGRVGRGE    C  L+   L   +  RL  + 
Sbjct: 623 VGVDVPNSTVMVVLDADRFGISQLHQLRGRVGRGEHPGLC--LFTTRLGGAALARLEQVA 680

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGM-PKFLIAQPELHDSLL 656
              DGF +AE DLK R EG+++G+ QSG      +      + ++
Sbjct: 681 ACLDGFELAELDLKIRGEGDVIGVAQSGRSRSLRLLSVTRDEEVI 725


>gi|257066532|ref|YP_003152788.1| helicase domain-containing protein [Anaerococcus prevotii DSM
           20548]
 gi|256798412|gb|ACV29067.1| helicase domain protein [Anaerococcus prevotii DSM 20548]
          Length = 663

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 195/634 (30%), Positives = 313/634 (49%), Gaps = 31/634 (4%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L++ +G+G K S    ++        +   DL  Y+P  + DR     I +I +      
Sbjct: 3   LTSLKGIGDKKSKDFKRL------GISSVSDLYNYYPREYEDRSKLKSIVDIDDNNKHYF 56

Query: 73  TGYIS-QHSSFQLQKRRPYKILLNDGTGE---ITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              IS +       K     I   +   +   I L++F  +          GR       
Sbjct: 57  VRKISSRLYQKNFGKMTISYIYAFEEKSQFRNIRLIWFNDR--FTPRRLVRGRTYKFYTS 114

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           + K        +P  +F    D     I ++Y L  G+S    ++ +  AL+      E 
Sbjct: 115 VSKKNAFYEAGNP--LFCEMDDDEIGSIASIYPLTKGISNKQIRQFMSRALAYFDRREEI 172

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ--IALLLMRKQ 246
           +   +L+  S     +    IH P      E  + A+ ++   +LL     +  L  + +
Sbjct: 173 LSDTILEGFSLNKRYDNLKEIHFPTS---VEGLTKAKSQIKIVDLLKDLCFLDFLKSKTK 229

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           F+++I +   ++     +IL  + F+ T+SQ   +++IL D        R+L GDVGSGK
Sbjct: 230 FRQDIDLAYKLD-----EILSELSFTLTRSQRRVLEEILDDCKSPYTANRLLVGDVGSGK 284

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+VA++ M      G Q+ +M P  +LA Q +E   +      +   ++TG      + K
Sbjct: 285 TIVAIVIMIIFALNGYQSAMMVPTELLAIQQFEKNIELFDKFNVRAALLTG--SSKDKDK 342

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E + +G+  I+IGTHA+  + + +  L  V+ DEQHRFGV QR  L  K  A + L M
Sbjct: 343 LKEDLKNGKIDILIGTHAIIVEDVDFNNLKFVVNDEQHRFGVSQRQMLALKGDAVNYLTM 402

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL L     ID+S I E P GRKPI T ++  ++I+ + E++   + EG++ Y
Sbjct: 403 TATPIPRTLSLKISEIIDLSIINELPKGRKPIMTRLLGSDKIEILYEKINQTIREGRQIY 462

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +   I+   +++  ++ + + +    +   IAI+HG+M   DKE ++  F  G   +L+
Sbjct: 463 VVSNNIDSDDKNSLENLYKIYKNRFPRY--RIAILHGKMKAKDKEDILGDFNKGKIDILL 520

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ATTVIEVGIDV +A+ +II NA +FGL+ LHQLRGRVGRGE  S C L+   P   +   
Sbjct: 521 ATTVIEVGIDVANANTMIIYNANNFGLSTLHQLRGRVGRGEYESYCYLISDNP---SPSN 577

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           +L+VL  + DGF IA++D +QR  G+IL   Q G
Sbjct: 578 KLNVLVESNDGFEIAKKDYEQRGGGKILSYLQHG 611


>gi|209524184|ref|ZP_03272734.1| DEAD/DEAH box helicase domain protein [Arthrospira maxima CS-328]
 gi|209495275|gb|EDZ95580.1| DEAD/DEAH box helicase domain protein [Arthrospira maxima CS-328]
          Length = 670

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 188/553 (33%), Positives = 297/553 (53%), Gaps = 30/553 (5%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   L     VG + S  L+++            DLL+Y+P   ID   +  I E++   
Sbjct: 127 LDQGLKEL--VGPRNSDLLARL------GIYTIYDLLYYYPRDHIDYARQVPIKELAPGE 178

Query: 69  IVTITGYISQHSSFQLQKRRPYKIL---LNDGTGEITLLFFYRKTEM--------LKNVF 117
            VTI   + + + F   K R   IL   + D TG++ +  F+              K  +
Sbjct: 179 TVTIVAQVKRCNCFSSPKNRQLTILELMVKDATGQLKISRFFAGNRYSNKGWQHKQKYNY 238

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD-----VNFPLIEAVYSLPTGLSVDLFK 172
             G  I  +G +KK K  I + +P     +  D     +    +  VY L  G+  DL +
Sbjct: 239 PPGAIIAASGLVKKNKYGITLDNPELEVLDRVDSRAASMKIGRVLPVYPLSDGIGADLLR 298

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           K ++ AL     LPE +   L +K     I++A   IH P      +W + AR RL +DE
Sbjct: 299 KAVLAALPAANKLPESLPPKLREKYQLIEISDAITNIHFPPNR---DWLASARRRLVFDE 355

Query: 233 LLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
               QI LL  R+  K       +  +G++ Q+  + +PF  TK+Q+  I +IL D++ +
Sbjct: 356 FFYLQIGLLQRRQVSKTNEKSAALLPQGELIQQFYKILPFELTKAQKRVIGEILTDLNSE 415

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++QGDVG+GKT+VA++AM AA++AG Q  +MAP  +LA+QHY+ +  +     + 
Sbjct: 416 EPMNRLIQGDVGAGKTVVAVVAMLAAIQAGYQTALMAPTEVLAEQHYQKLVGWLNLMHLP 475

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE++TG+   A RR+   ++  G+  +++GTHAL QD + ++KL LV++DEQHRFGV QR
Sbjct: 476 VELLTGSTKAAKRRQIHAQLQTGELPVLVGTHALIQDQVNFHKLGLVVIDEQHRFGVHQR 535

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            KL QK  +PHVL MTATPIPRTL LT  GD+D+S++ E P GR+PI+T ++   +  E 
Sbjct: 536 AKLQQKGESPHVLTMTATPIPRTLSLTLHGDLDVSQLDELPPGRQPIQTTMLSGRKRQEA 595

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDID 529
            + +   +++G++ Y + P +EE ++ + RS VE    L         IA++HGRM+  +
Sbjct: 596 YDLISREVAQGRQVYVVLPLVEESEKLDVRSAVEEHQKLPTKIFPELGIALLHGRMNSPE 655

Query: 530 KESVMDSFKNGTC 542
           KE+ +  F+ G  
Sbjct: 656 KEAAIAKFREGEL 668


>gi|269978182|ref|ZP_06185132.1| ATP-dependent DNA helicase RecG [Mobiluncus mulieris 28-1]
 gi|269933691|gb|EEZ90275.1| ATP-dependent DNA helicase RecG [Mobiluncus mulieris 28-1]
          Length = 836

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 216/833 (25%), Positives = 341/833 (40%), Gaps = 151/833 (18%)

Query: 2   RPSFLNPLFAPLSTFRGV-GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           R   +  L APLS    V GK     L+ +            DLL+Y P          +
Sbjct: 14  RVENMTNLDAPLSRL--VRGKSLVSKLAHL------GIGTVGDLLWYPPRRMYRWGELTR 65

Query: 61  ISEISEERIVTITGYISQHSSFQLQK--RRPYKILLNDG-----------TGEITLLFFY 107
              +     VT+   +        ++  +  + ++L D             G +T+ FF 
Sbjct: 66  FDTLVPGTEVTLFAAVMSTQLGWTRRHDKAMFTVVLQDELGEASTLWGATRGRLTVRFFA 125

Query: 108 RKTEMLK---NVFFEGRKITV----TGKIKKLKNRII--MVHPHYIFHNSQDVNFPL--- 155
           +    L+   +   +G         +G++          + HP Y      D        
Sbjct: 126 KHPAALQFHASRLEKGTIGVFAGKLSGRVDGFGGSGEAFLAHPEYQVLQDYDPEVARELS 185

Query: 156 --IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
              + +Y    GL     + +I   L+ +  +PE I +DL  +   P+ AEA   +H+P 
Sbjct: 186 LRPQPLYHATAGLPSWKIEGLITTILAGVEEIPEAIPEDLRARWGLPTAAEALQWLHHPP 245

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI------------ 261
                E        L Y E L    AL   R+Q +         E               
Sbjct: 246 DEASHECALDY---LRYREALTLGAALAKARQQARLRPAWASPAEVNGNGVISADSSPGG 302

Query: 262 -----------------------------------AQKILRNIPFSPTKSQESAIKDILQ 286
                                               ++ L  +PF  T  Q  A ++I  
Sbjct: 303 GSAGASGGGSGVMRCHSETAATSDKVDISGGGKTLVERFLAQLPFELTAGQLRAWQEISA 362

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           DM+ +  M R+LQG+VGSGKT++A +A   AV+ G QA  MAP  +LA QH+E +KK   
Sbjct: 363 DMATEVPMNRLLQGEVGSGKTVIAALAAITAVQNGCQAAFMAPTEVLAHQHFETLKKLLG 422

Query: 347 NTQIIVE---------------IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           N                     ++ G+ P   +      +  G+  I++GTHAL   S++
Sbjct: 423 NLGCSPSGLDGTKPEGDVVGLRLLVGSTPAKEKSALQTALQTGEPLIVVGTHALLSKSVK 482

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           + KL L +VDEQHRFGV+QR+ L       PH L MTATPIPRT+ +T  GD+D+S + E
Sbjct: 483 FSKLGLAVVDEQHRFGVEQRVALLAAGQRAPHFLAMTATPIPRTVAMTVFGDLDVSVLAE 542

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKV---VLSEGKKAYWIC------------------ 489
            P GR  +KT ++  + +  V    +     + +G + Y +C                  
Sbjct: 543 IPRGRGEVKTFLVSEDNVAWVARAWRRAAEEILDGGRVYVLCAQKAPHEPVPGDTAEKPD 602

Query: 490 -----------PQIEE--------------KKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
                      P  EE              +   N      R  +L     ++I  +H  
Sbjct: 603 TAPLAKPTTTVPLEEEFGGASGNVPTLAPGRVLHNVEDTFRRLQALPFFADTTITWVHSG 662

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +    K+  +  F +G   LL++TTVIEVG+DV +AS++II +A+ FGL+QLHQLRGR+G
Sbjct: 663 LDSGAKQRAIADFVSGVAPLLVSTTVIEVGMDVPEASMMIILDADRFGLSQLHQLRGRIG 722

Query: 585 RGEEISSCILLYHPPL-SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MP 642
           RG     C+ +    L    +  RL    +T DGF +AE DL+ R EG++LG  Q+G   
Sbjct: 723 RGVRPGVCLAIAPLSLADTPARERLEAFASTRDGFALAEADLRIRHEGDVLGDTQAGRNS 782

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           +  +        ++E A++ A+ I+ +D  L +   +  R++  L Q  E  +
Sbjct: 783 RLQVLSLVQDAKIIEAAKQAAEEIVAEDAQLANHP-ELARLVFGLGQGGENLR 834


>gi|257068997|ref|YP_003155252.1| RecG-like helicase [Brachybacterium faecium DSM 4810]
 gi|256559815|gb|ACU85662.1| RecG-like helicase [Brachybacterium faecium DSM 4810]
          Length = 739

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 193/706 (27%), Positives = 328/706 (46%), Gaps = 58/706 (8%)

Query: 41  FIDL---LFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRR--PYKILLN 95
             DL   L + P  ++       + EI +   V+    ++      ++ R     ++ ++
Sbjct: 31  VRDLDTMLRFAPRRYVVPAPLRSLREIHQGEEVSAIVEVTSVHDRAMRSRHGFILEVTVS 90

Query: 96  DGTGEITLLFF---YRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQD 150
           DGT  + L FF     + +  ++      +I V G +     +  + + HP Y       
Sbjct: 91  DGTETLPLTFFLTKKHQVQWHRDRLPVKARILVRGTVGYDDYRGALQLAHPDYEPVEDTP 150

Query: 151 VN---FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207
                      VY L   +S    +    + L     L   + + +L ++  P +AEA  
Sbjct: 151 QGRAWAQRPRPVYPLRRNISQKTMRAATEKGLEFADSLTRPVPEKVLSRRGLPPLAEAAQ 210

Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           ++H P   +D   T      L ++E    Q      R Q ++     +  EG +     +
Sbjct: 211 LVHRPLTVED---TRRGLAHLRFEEAFVLQAIFAQRRAQDERTPAPVLAAEGPLQGLFDQ 267

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +PF  T+ Q      I++ + + +    +LQGDVGSGKT+VAL AM  AV++G QA ++
Sbjct: 268 RLPFILTEGQREIGASIVERIGRGHPTSVLLQGDVGSGKTVVALRAMLRAVDSGHQAALL 327

Query: 328 APIGILAQQHYEFI-----------KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AP  +LA+QH+  +           +         V ++TG+   AHRR+ L  +  GQA
Sbjct: 328 APTEVLAEQHHRTLTTLLGELSRAGQLDAHPEATRVRLLTGSQRTAHRRETLLDVTSGQA 387

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPR 433
            I++GTHAL  +++++  L LV++DEQHRFGV  R +L  K     +PHV++MTATPIPR
Sbjct: 388 GIVVGTHALLTENVEFASLGLVVIDEQHRFGVDHRRRLRTKGPAGQSPHVIVMTATPIPR 447

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEGKKAYWICP 490
           T  L ++GD+D+  + E P  R  + + ++          + +R    ++  ++ + +C 
Sbjct: 448 TAALATVGDLDVLTLRESPGQRAGVTSFVVHEKLPAWEQRMWQRAAEEIAADRQVFVVCA 507

Query: 491 QIEEK------------------------KESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
           +I+E                                   R     E   + + ++HGR++
Sbjct: 508 RIDEDDAADDAPAPPVLDEYGRPQAPALAPARGVTQTARRLAERAELAGARLGVLHGRLT 567

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +K+ +M     G   LL++TTVIEVG+DV +AS++II +AE FG++QLHQLRGRVGRG
Sbjct: 568 GEEKQEIMGQMVRGEIDLLVSTTVIEVGVDVPNASVMIILDAERFGVSQLHQLRGRVGRG 627

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
           E            + +     L  + +  DGF +AE DL +R  G+++G +QSG+ + L 
Sbjct: 628 EHAGIAFFDTSAEVGREHSAHLQRVADAADGFALAELDLHRRGAGDLVGEEQSGLQRTLT 687

Query: 647 -AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
                     +E AR+DA  ++  DP+LT+       I   L   +
Sbjct: 688 HLDVLRDAQAIERAREDAFAVVAADPELTAHPALDGAIADRLRDAD 733


>gi|306835968|ref|ZP_07468960.1| DNA helicase RecG [Corynebacterium accolens ATCC 49726]
 gi|304568134|gb|EFM43707.1| DNA helicase RecG [Corynebacterium accolens ATCC 49726]
          Length = 708

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 221/709 (31%), Positives = 363/709 (51%), Gaps = 75/709 (10%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
           KK +  ++K +      E     LL ++P  +I  +    + + +E  IVTITG ++  +
Sbjct: 16  KKDATKITKALGYKTCGE-----LLAHYPRDYIRHNQDVGLGDAAEGDIVTITGTVTGIT 70

Query: 81  SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
           +    K     + L+   G I   FF      +  +   G+++ ++GK+K  + +  +  
Sbjct: 71  TRDTGKTTIINVQLD---GHIIATFFN--AMYVLRMLHRGQRVMMSGKLKYFRQQPQLQQ 125

Query: 141 PHYIFHNS---QDVNFPLIE-----------------------------------AVYSL 162
           P ++  ++    D      +                                    VY  
Sbjct: 126 PDFVEIDAFGRPDGELAAYQAPAAGKKKPQKATGSLRNLSQFGRLDKLLLEREWIPVYPA 185

Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222
              ++       I   L+  P + E +++ ++      S+ +A   IH P  A       
Sbjct: 186 TAKITSWYLMGAIHYVLAHTPTIREPLDQQMI-----ISLDQAVREIHEPGAA----GPQ 236

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAI 281
            A +RL Y+E L+  + + L ++         +    G   +++L ++PF  T+ Q   I
Sbjct: 237 RAVQRLKYNEALSIGLVMALRQRDAHAHTAPAMPAILGGFREELLTHLPFELTQGQRRVI 296

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +I  D+S    M+R+LQG+VGSGKT+VA  AM  A++AG QA ++AP  +LA QH   I
Sbjct: 297 TEIDDDLSGSLPMMRLLQGEVGSGKTMVATCAMLQAIDAGSQAALLAPTEVLASQHAASI 356

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
              +    + V ++TG+M  A +R+AL  I  G+A+I+IGTHA+ Q+S++++ L LVIVD
Sbjct: 357 G-TSVPEGVKVVLLTGSMRTAEKRQALLDIVSGEANIVIGTHAIIQESVEFFDLGLVIVD 415

Query: 402 EQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           EQHRFGV+QR  L  K      PHVL+MTATPIPRT+ +T  GD+ +S + E P GRKPI
Sbjct: 416 EQHRFGVEQRDSLRSKTREGISPHVLVMTATPIPRTIAMTIFGDLAVSTLAELPGGRKPI 475

Query: 459 KTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           ++ ++   R   +   +ER++  ++ G +AY +CP+IE         V+E    L     
Sbjct: 476 QSAVVAEWRPIWVARALERIREEVAHGHQAYIVCPRIE-----GEGGVLELAEQLAAGPF 530

Query: 516 S--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               + I+HG+M +  K+ VM SF  G   +L++TTVIEVG+DV +A++++I  AE+FG+
Sbjct: 531 KGLRVDILHGKMPN--KDEVMTSFARGEIDILVSTTVIEVGVDVPNATVMLIREAENFGV 588

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           +QLHQLRGRVGRG   S C++      +  SY R++ +  T  GF +AE DL+QR EG+I
Sbjct: 589 SQLHQLRGRVGRGGNASICLMHTKAEENSASYRRITQIAQTSSGFDLAELDLRQRHEGDI 648

Query: 634 LGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           LG  QSG      +        ++E    DA  ++ ++P L     +++
Sbjct: 649 LGAVQSGTHRTLRLLNLADDQDIVERTHADAYAMVQRNPQLAEELTRNL 697


>gi|307701074|ref|ZP_07638099.1| putative ATP-dependent DNA helicase RecG [Mobiluncus mulieris
           FB024-16]
 gi|307614069|gb|EFN93313.1| putative ATP-dependent DNA helicase RecG [Mobiluncus mulieris
           FB024-16]
          Length = 836

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 213/833 (25%), Positives = 338/833 (40%), Gaps = 151/833 (18%)

Query: 2   RPSFLNPLFAPLSTFRGV-GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           R   +  L APLS    V GK     L+ +            DLL+Y P          +
Sbjct: 14  RVENMTNLDAPLSRL--VRGKSLVSKLAHL------GIGTVGDLLWYPPRRMYRWGELTR 65

Query: 61  ISEISEERIVTITGYISQHSSFQLQK--RRPYKILLNDG-----------TGEITLLFFY 107
              +     VT+   +        ++  +  + ++L D             G +T+ FF 
Sbjct: 66  FDTLVPGTEVTLFAAVMSTQLGWTRRHDKAMFTVVLQDELGEASTLWGATRGRLTVRFFA 125

Query: 108 RKTEMLK---NVFFEGRKITV----TGKIKKLKNRII--MVHPHYIFHNSQDVNFPL--- 155
           +    L+   +   +G         +G++          + HP Y      D        
Sbjct: 126 KHPAALQFHASRLEKGTIGVFAGKLSGRVDGFGGSGEAFLAHPEYQVLQDYDPEVARELS 185

Query: 156 --IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
              + +Y    GL     + +I   L+ +  +PE I +DL  +   P+ AEA   +H+P 
Sbjct: 186 LRPQPLYHATAGLPSWKIEGLITTILAGVEEIPEAIPEDLRARWGLPTAAEALQWLHHPP 245

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI------------ 261
                E        L Y E L    AL   R+Q +         E               
Sbjct: 246 DEASHECALDY---LRYREALTLGAALAKARQQARLRPAWASPAEVNGNGVISADSSPGG 302

Query: 262 -----------------------------------AQKILRNIPFSPTKSQESAIKDILQ 286
                                               ++ L  +PF  T  Q  A ++I  
Sbjct: 303 GSAGASGGGSGVMRCHSETAATSDKVDISGGGKTLVERFLAQLPFELTAGQLRAWQEISA 362

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           DM+ +  M R+LQG+VGSGKT++A +A   AV+ G QA  MAP  +LA QH+E +KK   
Sbjct: 363 DMATEVPMNRLLQGEVGSGKTVIAALAAITAVQNGCQAAFMAPTEVLAHQHFETLKKLLG 422

Query: 347 NTQIIVE---------------IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           N                     ++ G+ P   +      +  G+  I++GTHAL   S++
Sbjct: 423 NLGCSPSGLDGTKPEGDVVGLRLLVGSTPAKEKSALQTALQTGEPLIVVGTHALLSKSVK 482

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           + KL L +VDEQHRFGV+QR+ L       PH L MTATPIPRT+ +T  GD+D+S + E
Sbjct: 483 FSKLGLAVVDEQHRFGVEQRVALLAAGQRAPHFLAMTATPIPRTVAMTVFGDLDVSVLAE 542

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKV---VLSEGKKAYWICPQIEEKKE---------- 497
            P GR  +KT ++  + +  V    +     + +G + Y +C Q    +           
Sbjct: 543 IPRGRGEVKTFLVSEDNVAWVARAWRRAAEEILDGGRVYVLCAQKAPHEPVPGDTAEKPD 602

Query: 498 ---------------------------------SNFRSVVERFNSLHEHFTSSIAIIHGR 524
                                             N      R  +L     ++I  +H  
Sbjct: 603 TAPLAKPTTTVSLEEEFGGASGNVPTLAPGRVLHNVEDTFRRLQALPFFADTTITWVHSG 662

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +    K+  +  F +G   LL++TTVIEVG+DV +AS++II +A+ FGL+QLHQLRGR+G
Sbjct: 663 LDSGAKQRAIADFVSGVAPLLVSTTVIEVGMDVPEASMMIILDADRFGLSQLHQLRGRIG 722

Query: 585 RGEEISSCILLYHPPL-SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MP 642
           RG     C+ +    L    +  RL    +T DGF +AE DL+ R EG++LG  Q+G   
Sbjct: 723 RGVRPGVCLAIAPLSLADTPARERLEAFASTRDGFALAEADLRIRHEGDVLGDTQAGRNS 782

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           +  +        ++E A++ A+ I+ +D  L +   +  R++  L Q     +
Sbjct: 783 RLQVLSLVQDAKIIEAAKQAAEEIVAEDAQLANHP-ELARLVFGLGQGGANLR 834


>gi|308235871|ref|ZP_07666608.1| putative ATP-dependent DNA helicase RecG [Gardnerella vaginalis
           ATCC 14018]
 gi|311115033|ref|YP_003986254.1| DNA helicase RecG [Gardnerella vaginalis ATCC 14019]
 gi|310946527|gb|ADP39231.1| DNA helicase RecG [Gardnerella vaginalis ATCC 14019]
          Length = 805

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 225/795 (28%), Positives = 360/795 (45%), Gaps = 131/795 (16%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
           K+ +  L  +            D L Y+P    +   R  +S+I   + V  +  I   +
Sbjct: 18  KRRASALKSL------GVITVKDALTYYPFRVTNPLKRAHLSQILPGQEVAFSATIQSIN 71

Query: 81  SFQLQKRRPYK--ILLNDGTGEITLLFFYRKTEMLKNV---FFEGRKITVTGKIKKLKNR 135
             Q+  RR Y+  + +     +  +++F +  + ++ V      G+ + V G   +   R
Sbjct: 72  IVQMAARRGYRLEVNVAQDAAQAQIVYFSKNRQYVQWVSGRIAVGQTVVVGGTSGEFNGR 131

Query: 136 IIMVHP-------------------HYIFHNSQDVNFPLIE----------AVYSLPTGL 166
           +   HP                        NS D +   +E           +Y   + +
Sbjct: 132 LQFTHPQILTVRAKSAESDDSAYNTDVRVQNSDDFSVQSVEDGIEKLCAPQPIYHANSRI 191

Query: 167 SVDLFKKIIVEALSRL---------------------------PVLPEWIEKDLLQKKSF 199
           S +   + I+  L                               VLP+ + + +   ++ 
Sbjct: 192 SSEHIHETILGLLRLFKTCDSSDFNVDTTGVADTNVPDTNVLSDVLPDVLPQFVTNSRNL 251

Query: 200 PSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
              A AF  IHNP+   DFE          Y+E    QIA+L  RK+  +          
Sbjct: 252 MHRAAAFESIHNPQNKNDFENAIHTMR---YEEAFISQIAVLQSRKKSGENKAYTCE-NS 307

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQK---------NRMLRILQGDVGSGKTLVA 310
           ++ +    ++PF  T+ Q++ I +I  DM  +           M R+LQG+VGSGKT+VA
Sbjct: 308 ELRKHFEESLPFELTEGQKNVISEITADMQGESQATEESPLKPMRRLLQGEVGSGKTIVA 367

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE--IITGNMPQAHRRKAL 368
           + AM  AV +G QAV++AP  +LA QH   +++  +   I VE  +ITG M  A RR AL
Sbjct: 368 MSAMLQAVGSGHQAVLIAPTQVLASQHATNLQQMIERAGINVEITLITGGMKLASRRSAL 427

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL---TQKATAPHVLL 425
            ++A G+  II+ THA F  S +   L LVI+DEQHRFGV+QR  L         PH+L+
Sbjct: 428 AKVASGEPAIIVATHAAFSASFKPTNLALVIIDEQHRFGVEQRDTLLRKISGNAVPHLLV 487

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV---LSEG 482
           MTATPIPR+  +T  GD+D S +TE P GRKPI+T +I      ++      +   +  G
Sbjct: 488 MTATPIPRSAAMTWFGDLDASYLTELPGGRKPIRTFVINEEDSHKMASMFYHIRSRIDAG 547

Query: 483 KKAYWICPQIE------------------------------------------EKKESNF 500
           ++AY +C +I+                                          +++    
Sbjct: 548 ERAYVVCARIDSEDSEENNDNTYNTYNNADAIYQENQDSYTLNSQNTQNTQIAQREVHTV 607

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             + +R  +L +      A + GR SD +K  +M  F +G  ++L++TTVIEVG+DV  A
Sbjct: 608 LQISKRLQNLPQFKGVEFAQLTGRTSDEEKREIMHKFDSGQVQILVSTTVIEVGVDVAKA 667

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           S I+I +A+ FGLAQLHQLRGRVGR    S   L+ + P ++ +  RL V++N+ DG +I
Sbjct: 668 SCIVIFDADRFGLAQLHQLRGRVGRSGTQSWAFLVSNAPNNQLAAERLQVVENSLDGAII 727

Query: 621 AEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
           A++DL+ R  G++LG  QSG      + +      ++  AR+DA  +L  DP L      
Sbjct: 728 AQKDLELRNVGDVLGDSQSGGKSSLKLLRVVKDAKIIAEAREDANTLLEHDPTLLEHPQT 787

Query: 680 SIRILLYLYQYNEAF 694
           +  +L +    + A 
Sbjct: 788 AGAVLDFTQGSSTAI 802


>gi|227875295|ref|ZP_03993437.1| possible DNA helicase RecG [Mobiluncus mulieris ATCC 35243]
 gi|227844200|gb|EEJ54367.1| possible DNA helicase RecG [Mobiluncus mulieris ATCC 35243]
          Length = 819

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 215/829 (25%), Positives = 340/829 (41%), Gaps = 151/829 (18%)

Query: 6   LNPLFAPLSTFRGV-GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L APLS    V GK     L+ +            DLL+Y P          +   +
Sbjct: 1   MTNLDAPLSRL--VRGKSLVSKLAHL------GIGTVGDLLWYPPRRMYRWGELTRFDTL 52

Query: 65  SEERIVTITGYISQHSSFQLQK--RRPYKILLNDG-----------TGEITLLFFYRKTE 111
                VT+   +        ++  +  + ++L D             G +T+ FF +   
Sbjct: 53  VPGTEVTLFAAVMSTQLGWTRRHDKAMFTVVLQDELGEASTLWGATRGRLTVRFFAKHPA 112

Query: 112 MLK---NVFFEGRKITV----TGKIKKLKNRII--MVHPHYIFHNSQDVNFPL-----IE 157
            L+   +   +G         +G++          + HP Y      D           +
Sbjct: 113 ALQFHASRLEKGTIGVFAGKLSGRVDGFGGSGEAFLAHPEYQVLQDYDPEVARELSLRPQ 172

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            +Y    GL     + +I   L+ +  +PE I +DL  +   P+ AEA   +H+P     
Sbjct: 173 PLYHATAGLPSWKIEGLITTILAGVEEIPEAIPEDLRARWGLPTAAEALQWLHHPPDEAS 232

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI---------------- 261
            E        L Y E L    AL   R+Q +         E                   
Sbjct: 233 HECALDY---LRYREALTLGAALAKARQQARLRPAWASPAEVNGNGVISADSSPGGGSAG 289

Query: 262 -------------------------------AQKILRNIPFSPTKSQESAIKDILQDMSQ 290
                                           ++ L  +PF  T  Q  A ++I  DM+ 
Sbjct: 290 ASGGGSGVMRCHSETAATSDKVDISGGGKTLVERFLAQLPFELTAGQLRAWQEISADMAT 349

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           +  M R+LQG+VGSGKT++A +A   AV+ G QA  MAP  +LA QH+E +KK   N   
Sbjct: 350 EVPMNRLLQGEVGSGKTVIAALAAITAVQNGCQAAFMAPTEVLAHQHFETLKKLLGNLGC 409

Query: 351 IVE---------------IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
                             ++ G+ P   +      +  G+  I++GTHAL   S+++ KL
Sbjct: 410 SPSGLDGTKPEGDVVGLRLLVGSTPAKEKSALQTALQTGEPLIVVGTHALLSKSVKFSKL 469

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L +VDEQHRFGV+QR+ L       PH L MTATPIPRT+ +T  GD+D+S + E P G
Sbjct: 470 GLAVVDEQHRFGVEQRVALLAAGQRAPHFLAMTATPIPRTVAMTVFGDLDVSVLAEIPRG 529

Query: 455 RKPIKTVIIPINRIDEVIERLKV---VLSEGKKAYWIC---------------------- 489
           R  +KT ++  + +  V    +     + +G + Y +C                      
Sbjct: 530 RGEVKTFLVSEDNVAWVARAWRRAAEEILDGGRVYVLCAQKAPHEPVPGDTAEKPDTAPL 589

Query: 490 -------PQIEE--------------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
                  P  EE              +   N      R  +L     ++I  +H  +   
Sbjct: 590 AKPTTTVPLEEEFGGASGNVPTLAPGRVLHNVEDTFRRLQALPFFADTTITWVHSGLDSG 649

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            K+  +  F +G   LL++TTVIEVG+DV +AS++II +A+ FGL+QLHQLRGR+GRG  
Sbjct: 650 AKQRAIADFVSGVAPLLVSTTVIEVGMDVPEASMMIILDADRFGLSQLHQLRGRIGRGVR 709

Query: 589 ISSCILLYHPPL-SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLI 646
              C+ +    L    +  RL    +T DGF +AE DL+ R EG++LG  Q+G   +  +
Sbjct: 710 PGVCLAIAPLSLADTPARERLEAFASTRDGFALAEADLRIRHEGDVLGDTQAGRNSRLQV 769

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
                   ++E A++ A+ I+ +D  L +   +  R++  L Q  E  +
Sbjct: 770 LSLVQDAKIIEAAKQAAEEIVAEDAQLANHP-ELARLVFGLGQGGENLR 817


>gi|294791347|ref|ZP_06756504.1| ATP-dependent DNA helicase RecG [Scardovia inopinata F0304]
 gi|294457818|gb|EFG26172.1| ATP-dependent DNA helicase RecG [Scardovia inopinata F0304]
          Length = 757

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 227/747 (30%), Positives = 360/747 (48%), Gaps = 83/747 (11%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +   T   D LFY+P    D      + ++   +       + +     +  R
Sbjct: 17  RRVSAFKSLGLTTVADALFYYPFRVTDPVKCCTLRQVKIGQKAAFAATVRRIRVVPMNAR 76

Query: 88  RPYKILLNDGT------------GEITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKL 132
           R Y++ +                G  T  FF       + L +   +GR +  +G+    
Sbjct: 77  RGYRVEVQVDDADLVNPSAGQYEGYATFTFFTYKKHYADWLLSRLKKGRTLVASGEASLY 136

Query: 133 KNRIIMVHPHYIF------HNSQDV--------NFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            N +   HP  +        +S DV             + +Y   + +S     + I+  
Sbjct: 137 GNNLQFTHPEILTVAEPGQEDSADVASLEEGIHQLSRPQPIYHANSRISSAHIHESILGI 196

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF-EWTSPARERLAYDELLAG 236
           L  L   +P+ I ++L    +F   ++A   IHNP    +F    S  R    Y+E L  
Sbjct: 197 LQSLQDPIPDVIPEEL--SGTFMHRSQALMAIHNPHSIDEFWRGISTMR----YEEALVS 250

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q ALL  R++ +      I  E  + +K + ++PF  T  QE  I  I  DM +   M R
Sbjct: 251 QTALLQEREKMQSSDSY-ICTETSLTEKFIHSLPFDLTSGQEEVISQIQTDMGRDYPMSR 309

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEI 354
           +LQG+VGSGKT+VAL A+  A  +G QAV++AP  +LA+QHY+ I    Q  +I   + +
Sbjct: 310 LLQGEVGSGKTVVALAALLQAASSGYQAVLVAPTQVLARQHYQVIASMLQKAEIDLPLVL 369

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG M  A RR+AL   A G   I++ THA F  + Q   + L ++DEQHRFGV+QR K+
Sbjct: 370 LTGGMHLADRRQALAIPASGVPCIVVATHAAFSSTFQAPHVALEVIDEQHRFGVEQREKM 429

Query: 415 TQK-ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDE 470
            ++ +  PH+L+MTATPIPR+  +T  G++DIS +TE P GR+PI +V+I  N    + +
Sbjct: 430 REESSAIPHLLVMTATPIPRSAAMTWFGNLDISWLTELPQGRQPITSVVIEENDSQIMGQ 489

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRS---------------------------- 502
           +   ++  L  G++AY ICP+I++ ++++  +                            
Sbjct: 490 MFAHIRHRLDAGERAYVICPRIDDSQDADSANGGRDGTEETDTIDLLSYDADGMLADDQE 549

Query: 503 ----------VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                     +  R   L +     IA + GR  D  K+ VM  F +GT  LL+ATTVIE
Sbjct: 550 RERPLHSVSEIAARLAGLPQFSGIQIATLTGRDDDETKDQVMKDFSSGTSPLLVATTVIE 609

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV +AS I++ +A+ FGL+QLHQLRGRVGRG+  S    +   P    +  RL V++
Sbjct: 610 VGVDVPEASCIVVFDADRFGLSQLHQLRGRVGRGKSRSWAFFISRAPQDSLAAQRLEVIR 669

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDP 671
           +T DG  IA+ DL+ R  G++LG  QSG    F + +      ++  ARKDA ++L  DP
Sbjct: 670 STSDGAKIAQADLELRGAGDVLGDAQSGGRTSFKLLRVVKDADIISSARKDADNVLVSDP 729

Query: 672 DLTSVRGQSIRILLYLYQYNEAFQFIR 698
           +L+      +   +  +   +    I 
Sbjct: 730 NLSQEGHLQLAGAVLDFTRGKGNLLIS 756


>gi|283769481|ref|ZP_06342377.1| putative ATP-dependent DNA helicase RecG [Bulleidia extructa W1219]
 gi|283103749|gb|EFC05135.1| putative ATP-dependent DNA helicase RecG [Bulleidia extructa W1219]
          Length = 667

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 188/634 (29%), Positives = 317/634 (50%), Gaps = 17/634 (2%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILLNDGT 98
              D+L  +P  +  R+     ++            I  +  SF   K+      +    
Sbjct: 24  TIEDVLTNYPIRYE-RYESLPYTQWKVGETFRFEARILGKFRSFGYGKKMVVHFDVLVEG 82

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
             + +  F R     KN       IT+ GK     N++  ++                E 
Sbjct: 83  HVVDVTIFNR--PWAKN-LPSNHVITIFGKYN-GHNKLTAINYDLKPMQYHRP----FEP 134

Query: 159 VYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
           VY           +  + + L   L    + + + L++K       +A   IH P     
Sbjct: 135 VYRSKADFQQRSIRGFMEKILKECLGEQEDVLPRFLIEKYHLLHRQQALRYIHLPLHQAS 194

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
                 A  RL Y+E L     L L ++    E      +     Q +++ IPF  T  Q
Sbjct: 195 L---KQAVRRLKYEEFLRFFTHLYLKQEDEHYEGKKKKKILDTYLQALIQQIPFELTTDQ 251

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
           ++   +I+QDM    +M R++QGDVGSGKT++A +++ A V +G Q  ++AP  ILA+QH
Sbjct: 252 KNTFFEIVQDMRSMKKMNRLVQGDVGSGKTVIAGMSLLACVSSGYQCALLAPTEILARQH 311

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           ++ +K         + ++   +  + +   L  +  G+  ++IGTH+L Q  +++ KL L
Sbjct: 312 FQTMKSLFPKESQRMALLYSGLSGSEKESILTDLKKGKIQMVIGTHSLLQSGVKFQKLGL 371

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           V+VDEQ RFGVQQR  L  ++     L+MTATPIPRTL  + LG +D+S I   P GRK 
Sbjct: 372 VVVDEQQRFGVQQREFLKSQSNDVDFLVMTATPIPRTLASSLLGGMDVSTIHSMPQGRKA 431

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-NFRSVVERFNSLHEHF-T 515
             T  +  N    V++ ++ +L +G + Y IC  +   +     R+V +   +L + F  
Sbjct: 432 PVTKRLEENSFHSVLKEVQALLDKGHQLYVICAAVNANESGLKVRNVYDTQRNLAKVFPN 491

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            ++A+IHG+M   +KE++M+ F +   ++L++TTV+EVG++ V+A+ +II +++ FGL+ 
Sbjct: 492 YTVALIHGQMKSQEKEAIMNQFYSNQIQILVSTTVVEVGMNCVNATGMIIYDSDRFGLST 551

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           LHQLRGR+ RG +   C LL      + +  RL VL  ++DGF I+E+DL+ R  G+ILG
Sbjct: 552 LHQLRGRIQRGNDQGYCWLLSRSQ-DELTIERLEVLVKSDDGFYISEQDLRLRGPGDILG 610

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           ++QSG+P F++       + ++ A+ DA+ IL  
Sbjct: 611 LRQSGLPSFVLGNLIEDTAFIDQAKLDAQEILEH 644


>gi|146317997|ref|YP_001197709.1| RecG-like helicase [Streptococcus suis 05ZYH33]
 gi|145688803|gb|ABP89309.1| RecG-like helicase [Streptococcus suis 05ZYH33]
          Length = 542

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 176/541 (32%), Positives = 280/541 (51%), Gaps = 24/541 (4%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   LS   G+G K +    KI            DLL Y+P  + D      I ++ 
Sbjct: 1   MKRLCDELSVLPGIGPKSAEKFLKIS------IQNINDLLTYYPFRYEDF-ESKSIYDLQ 53

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
           +     + G +   ++ Q    +  ++  +   GE+ L   +     L +    G+ I V
Sbjct: 54  DGEKAVVVGEVVSPANVQYYGYKRNRLRFSMKQGEVVLAVSFFNQPYLADKIVLGQDIAV 113

Query: 126 TGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR--LP 183
            GK  K K  +  +       +        ++ VY +  G+S     K I  A+ +  L 
Sbjct: 114 WGKWDKAKASLTGMKILAQVSDE-------LQPVYHVAQGISQVNLVKAIKTAIDQGYLH 166

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           +L E +   L ++    +  EA   +H P      E    A  R+ ++EL   Q+ L ++
Sbjct: 167 LLEENLPSVLRERYRLMNRREAVFAMHFPTN---LEEYRQALRRMKFEELFYFQLQLQML 223

Query: 244 RKQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +   +  +  + I  +       +R +PF  T +Q  A+ +IL DM     M R+LQGDV
Sbjct: 224 KANNRDILNGLKIAYDADRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMNRLLQGDV 283

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA +AM AAV AG QA IM P  ILA+QH+E +++     ++ + ++TG M  A
Sbjct: 284 GSGKTVVAGLAMFAAVTAGMQAAIMVPTEILAEQHFESLRQLF--PELSIALLTGGMKAA 341

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            RR ALE I+ GQ  II+GTHAL Q+S+ Y+KL LV+ DEQHRFGV+QR    +K   P 
Sbjct: 342 ERRTALEAISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREKGDNPD 401

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  +   ++  V++ L+  L  G
Sbjct: 402 VLMMTATPIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWLERELEVG 461

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNG 540
            + Y+I P IEE +  + ++ V+  + L  HF   + +  +HG+M + +K+++M + ++ 
Sbjct: 462 AQVYFISPLIEESEALDLKNAVDLQSDLQAHFGEQVTVDLLHGKMKNDEKDAIMQALRSE 521

Query: 541 T 541
            
Sbjct: 522 K 522


>gi|306818557|ref|ZP_07452280.1| possible DNA helicase RecG [Mobiluncus mulieris ATCC 35239]
 gi|304648730|gb|EFM46032.1| possible DNA helicase RecG [Mobiluncus mulieris ATCC 35239]
          Length = 819

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 215/829 (25%), Positives = 340/829 (41%), Gaps = 151/829 (18%)

Query: 6   LNPLFAPLSTFRGV-GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L APLS    V GK     L+ +            DLL+Y P          +   +
Sbjct: 1   MTNLDAPLSRL--VRGKSLVSKLAHL------GIGTVGDLLWYPPRRMYRWGELTRFDTL 52

Query: 65  SEERIVTITGYISQHSSFQLQK--RRPYKILLNDG-----------TGEITLLFFYRKTE 111
                VT+   +        ++  +  + ++L D             G +T+ FF +   
Sbjct: 53  VPGTEVTLFAAVMSTQLGWTRRHDKAMFTVVLQDELGEASTLWGATRGRLTVRFFAKHPA 112

Query: 112 MLK---NVFFEGRKITV----TGKIKKLKNRII--MVHPHYIFHNSQDVNFPL-----IE 157
            L+   +   +G         +G++          + HP Y      D           +
Sbjct: 113 ALQFHASRLEKGTIGVFAGKLSGRVDGFGGSGEAFLAHPEYQVLQDYDPEVARELSLRPQ 172

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            +Y    GL     + +I   L+ +  +PE I +DL  +   P+ AEA   +H+P     
Sbjct: 173 PLYHATAGLPSWKIEGLITTILAGVEEIPEAIPEDLRARWGLPTAAEALQWLHHPPDEAS 232

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI---------------- 261
            E        L Y E L    AL   R+Q +         E                   
Sbjct: 233 HECALDY---LRYREALTLGAALAKARQQARLRPAWASPAEVNGNGVISADSSPGGGSAG 289

Query: 262 -------------------------------AQKILRNIPFSPTKSQESAIKDILQDMSQ 290
                                           ++ L  +PF  T  Q  A ++I  DM+ 
Sbjct: 290 ASGGGSGVMRCHSETAATSDKVDISGGGKTLVERFLAQLPFELTAGQLRAWQEISADMAT 349

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           +  M R+LQG+VGSGKT++A +A   AV+ G QA  MAP  +LA QH+E +KK   N   
Sbjct: 350 EVPMNRLLQGEVGSGKTVIAALAAITAVQNGCQAAFMAPTEVLAHQHFETLKKLLGNLGC 409

Query: 351 IVE---------------IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
                             ++ G+ P   +      +  G+  I++GTHAL   S+++ KL
Sbjct: 410 SPSGLDGTKPEGDVVGLRLLVGSTPAKEKSALQTALQTGEPLIVVGTHALLSKSVKFSKL 469

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L +VDEQHRFGV+QR+ L       PH L MTATPIPRT+ +T  GD+D+S + E P G
Sbjct: 470 GLAVVDEQHRFGVEQRVALLAAGQRAPHFLAMTATPIPRTVAMTVFGDLDVSVLAEIPRG 529

Query: 455 RKPIKTVIIPINRIDEVIERLKV---VLSEGKKAYWIC---------------------- 489
           R  +KT ++  + +  V    +     + +G + Y +C                      
Sbjct: 530 RGEVKTFLVSEDNVAWVARAWRRAAEEILDGGRVYVLCAQKAPHEPVPGDTAEKPDTAPL 589

Query: 490 -------PQIEE--------------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
                  P  EE              +   N      R  +L     ++I  +H  +   
Sbjct: 590 AKPTTTVPLEEEFGGASGNVPTLAPGRVLHNVEDTFRRLQALPFFADTTITWVHSGLDSG 649

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            K+  +  F +G   LL++TTVIEVG+DV +AS++II +A+ FGL+QLHQLRGR+GRG  
Sbjct: 650 AKQRAIADFVSGVAPLLVSTTVIEVGMDVPEASMMIILDADRFGLSQLHQLRGRIGRGVR 709

Query: 589 ISSCILLYHPPL-SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLI 646
              C+ +    L    +  RL    +T DGF +AE DL+ R EG++LG  Q+G   +  +
Sbjct: 710 PGVCLAIAPLSLADTPARERLEAFASTRDGFALAEADLRIRHEGDVLGDTQAGRNSRLQV 769

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
                   ++E A++ A+ I+T+D  L +   +  R++  L Q     +
Sbjct: 770 LSLVQDAKIIEAAKQAAEEIVTEDAQLANHP-ELARLVFGLGQGGANLR 817


>gi|19110483|dbj|BAB85789.1| RecG [Corynebacterium glutamicum]
          Length = 707

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 212/676 (31%), Positives = 338/676 (50%), Gaps = 59/676 (8%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-QHSSFQLQKRRPYKILL 94
              T   +LL +H   +        I + +E  +VTI G ++    S+    +  YK+ +
Sbjct: 26  LGYTTAEELLRHHVRKYSHHGSGVGIGDATEGDLVTIVGQVAFAKQSYTQSGKMLYKVTV 85

Query: 95  NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP 154
              T  I + FF    + +  +  EG +   TGK+K  +N   + HP +I          
Sbjct: 86  LTETERIGISFF--GAKHIPRLLPEGTRALFTGKVKFFRNEPQLSHPEFIVIPDPGSGRR 143

Query: 155 L--------------------------IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           L                             +Y+    ++       +   L  +PV+ + 
Sbjct: 144 LTATGGMKSLAAYGDVEEVALRLVDREYIPIYAGTATMTTWRIMAAVQRVLETMPVIKDH 203

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE---RLAYDELLAGQIALLLMRK 245
           I         +    +A  +   P  A   +  +          Y+E L+    + + R 
Sbjct: 204 I--------GWCP--KACPVSTRPSAAFTIQAMNLPARLSTVCKYNEALSLATVMAIRRA 253

Query: 246 QFKKEIGIPINVEGK-IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
             K     P+    K     ++  + F  T  Q+   ++I  D+ Q+  M R+LQG+VGS
Sbjct: 254 DTKNRKAPPMPRALKGHQHMLIDALNFQLTVGQKQCDREISADIEQRVPMSRLLQGEVGS 313

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQA 362
           GKT+V+LIAM  A+++G Q  ++AP  +LA QH   + K   +    I V ++TG+MP  
Sbjct: 314 GKTIVSLIAMLQAIDSGRQCAMLAPTEVLATQHARSLSKTLDDAGLDINVVLLTGSMPTG 373

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--- 419
            +++AL  I  G A I++GTHAL QD+++++ L LV+VDEQHRFGV+QR +L  K     
Sbjct: 374 AKKEALLEIISGDADIVVGTHALIQDTVEFFDLGLVVVDEQHRFGVEQRDQLRTKGREGL 433

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLK 476
            PH+L+MTATPIPRT+ +T  GD+ +S + E P GR+PI+T +IP ++   +    ER+ 
Sbjct: 434 TPHLLVMTATPIPRTIAMTVFGDLAVSTLRELPGGRRPIQTSVIPDHKPGWVKRGWERIG 493

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVM 534
             +  G++AY +CP+IE +       V+E    L E      ++ ++HGRM    K+SVM
Sbjct: 494 EEVLAGRQAYVVCPRIEGEG-----GVLEIHAYLSEQVYPGLNVGMLHGRMDTDLKDSVM 548

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G   +L+ATTVIEVGIDV +A++++I  AE FG++Q+HQLRGRVGRG+  S C+L
Sbjct: 549 QEFAQGEIDILVATTVIEVGIDVANATVMLIREAERFGVSQIHQLRGRVGRGQHDSLCLL 608

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHD 653
                       RL+ +  T DGF ++E DL+ R+EG++LG +QSG   K          
Sbjct: 609 HTTFDEDSPQGQRLAAISTTTDGFQLSELDLQVRQEGDVLGTRQSGSDTKLRHLSFISDQ 668

Query: 654 SLLEIARKDAKHILTQ 669
            ++E A  DA  ++  
Sbjct: 669 KIIERALIDATELVAA 684


>gi|289178040|gb|ADC85286.1| RecG [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 825

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 229/792 (28%), Positives = 347/792 (43%), Gaps = 123/792 (15%)

Query: 9   LFAPLSTF---RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  PL      +    +    L K+            D L Y+P    D      + +  
Sbjct: 47  LETPLHALLANK----RRVSALKKL------GVLDVRDALTYYPFRVTDPVPVRALVQAQ 96

Query: 66  EE--RIVTITGYISQHSSFQLQKRRPYK--ILLNDG--------TGEI-TLLFFYRKT-- 110
                 +     +       +  R  Y+  +L++D          G + TL+FF  +   
Sbjct: 97  PGLKEKMACAVRVRSVRVSPMNARAGYRVEVLVDDDEFAATLHVRGSLATLVFFSHRKSY 156

Query: 111 -EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE------------ 157
            + L         + + G      +R+   HP  +     ++   +              
Sbjct: 157 VDWLAGRLRVDGHVVIAGDPTMYMDRLQFTHPELLTVGGANLRADVSTVAEGLQRVCRPR 216

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRL----------------------------------- 182
            VY   + +S +     I+  L  L                                   
Sbjct: 217 PVYHANSRISSEHIHDTILYVLRLLAGEDPATAMHADDETAQPHMRTLYAENPQIREHLD 276

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             +P+ +  +LL + +    A+AF+ IH+P     F           Y+E    Q AL+ 
Sbjct: 277 AAIPDILPGNLLAELNLMHRAQAFSQIHDPDSVGAFTQAITTMR---YEEAFVCQTALIR 333

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            R   ++      + + ++  + +  +PF  TK Q   + +I  DM Q + M R+LQG+V
Sbjct: 334 ARHDAREHNAYVCS-DVQLRDEYIDTLPFVLTKGQREVVDEISHDMCQDHPMQRLLQGEV 392

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA+ AM  AV +G QAV++AP  +LA+QHY+ I          V ++TG M  A
Sbjct: 393 GSGKTVVAVSAMLQAVGSGHQAVLVAPTQVLAEQHYQSISNVFNRAP--VLLLTGGMKLA 450

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAP 421
            RRK L   A G+  I++ THA F  S Q   L L ++DEQHRFGV+QR  L  +    P
Sbjct: 451 ERRKVLGTAASGEPCIVVATHAAFSKSFQAPNLALAVIDEQHRFGVEQRETLRSKSDVDP 510

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+TV+IP      + E    +   
Sbjct: 511 HLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIQTVVIPEENAPLMAEMFWHIRHR 570

Query: 482 ---GKKAYWICPQIEEKKE-----------------------------------SNFRSV 503
              G++AY +CP+IEE  E                                    +   +
Sbjct: 571 IDAGERAYIVCPRIEESTEDAEGGESGGDARADSDDGMLLSDEDLGETNARAPLHSVHEI 630

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            ER  SL +        + GR  D  KE VM  F +G   +++ATTVIEVG+DV  AS I
Sbjct: 631 SERLQSLPQFQGVRFCELTGRDDDETKERVMAEFASGQTPVMVATTVIEVGVDVPQASCI 690

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +I +A+ +GL+QLHQLRGRVGRG   S   L+     +  +  RL V+ ++ DG LIA++
Sbjct: 691 VIFDADRYGLSQLHQLRGRVGRGGTHSWAFLVSQAEPNSIAEQRLDVIAHSLDGALIAQK 750

Query: 624 DLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           DL+ R  G++LG  QSG      + +     +++  ARK A+ +L  DP L     Q   
Sbjct: 751 DLELRGAGDVLGDTQSGGRSSLKLLRVVKDAAMITDARKRAELLLDADPTLEHHT-QLAG 809

Query: 683 ILLYLYQYNEAF 694
            +L   + NE F
Sbjct: 810 AVLDFSRGNEKF 821


>gi|325846657|ref|ZP_08169572.1| putative ATP-dependent DNA helicase RecG [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481415|gb|EGC84456.1| putative ATP-dependent DNA helicase RecG [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 659

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 186/604 (30%), Positives = 305/604 (50%), Gaps = 19/604 (3%)

Query: 38  ETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDG 97
             +  DL  Y+P  + DR  +  +S   +         I         K+     L    
Sbjct: 22  IYKVEDLYNYYPREYEDRSKKYDLSHGLDGNKHYFEWKIESKVYTNYSKKFSISYLYGSE 81

Query: 98  TG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156
               I +++F  K          G+      KI K        +P +   +  D     I
Sbjct: 82  NDKRIKIVYFNDK--FSPRKLKLGQSYKFYTKIVKNGYEYECHNPEF--TDIDDGRIGNI 137

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
             +Y L   ++       I +AL+        ++KD+L K SF         IH P    
Sbjct: 138 VPIYPLTKSITNKNLSDFIDQALNFFDQNEILLDKDILDKFSFSDKLSNLKEIHFPTSLD 197

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
             +      +    D L       ++ ++   +++ +  +++     KIL ++ F  TKS
Sbjct: 198 RLKKAKSEIK--IIDFLKELIFIYVMQKENSYQDLNLKFDLD-----KILNSLDFKLTKS 250

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q +++ +IL D +  N M R+L GDVGSGKT++ALIAM        Q+ +M P  +LA Q
Sbjct: 251 QYNSLVEILNDCTSSNIMNRLLCGDVGSGKTIIALIAMIIFSLNSYQSCMMVPTEVLAIQ 310

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            +E  K   ++  + VE++T +       K  E+I +GQ  I+IGTHAL  D +++  L 
Sbjct: 311 QFEKNKNLIESFGLRVELLTSSTKNKDSVK--EKIKNGQIDIVIGTHALIVDDVEFKNLK 368

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L++ DEQHRFGV+QR  L +K    + L MTATPIPRTL L     + +S+ITE P GR 
Sbjct: 369 LIVADEQHRFGVRQRQALYEKGNKANYLTMTATPIPRTLFLKMKNLLSLSQITELPKGRG 428

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            + T ++ ++  D +  ++   L++G++ Y +   I  + E++  ++ +R+ +  +    
Sbjct: 429 QVITELVLMSMEDSLFSKISNFLNQGRQVYVVSDSINSEDENSVENLYKRYKT--KFTDK 486

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I  +HG++   +KE+++  F +G   +LI+TTVIEVGIDV +A+ ++I NA +FGL+ L
Sbjct: 487 RIEKLHGKLKADEKENILKEFSDGKIDVLISTTVIEVGIDVSNANCMVIYNANNFGLSSL 546

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGR+GRGE  S C L+       +  ++L+++KN+ DGF IA++DLK R  G+IL  
Sbjct: 547 HQLRGRIGRGEHESFCYLVSKK---IDQRSKLNIIKNSNDGFEIAKKDLKLRGAGKILST 603

Query: 637 KQSG 640
            Q G
Sbjct: 604 IQHG 607


>gi|239917402|ref|YP_002956960.1| ATP-dependent DNA helicase RecG [Micrococcus luteus NCTC 2665]
 gi|281414113|ref|ZP_06245855.1| ATP-dependent DNA helicase RecG [Micrococcus luteus NCTC 2665]
 gi|239838609|gb|ACS30406.1| ATP-dependent DNA helicase RecG [Micrococcus luteus NCTC 2665]
          Length = 730

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 206/736 (27%), Positives = 353/736 (47%), Gaps = 56/736 (7%)

Query: 11  APLSTFR---GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           AP++       +G K    L + +       T   DLL + P  +I+R     I+ +  +
Sbjct: 5   APVTDLPLSEVLGGKLPARLEREL-----GLTTVGDLLDHVPRRWIERGELTPIAALPYD 59

Query: 68  RIVTITGYISQHSSFQLQKRRPYKI--LLNDGT------GEITLLFFYRKTEMLKNVFFE 119
             VT+   +   ++ ++  R  + +   + D +        +++ FF       +     
Sbjct: 60  AEVTVVAVVESVTTRRMHSRPGFIVDVTVADPSVAGVPGASLSMAFFNGHDA--RRRLAP 117

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP---LIEAVYSLPTGLSVDLFKKIIV 176
           G      G+  + + RI + +P +   +              +Y     L     +  + 
Sbjct: 118 GMTAMFQGRTTEYRGRITLNNPDFALLDDDVTPGEVDVRPVPLYRATGKLPSWTVRSAVA 177

Query: 177 EALSRLPV--LPEWIEKDLLQKKS--------FPSIAEAFNIIHNPRKAKDFEWTSPARE 226
             L  + +  +PE + + +  + +         P  A+A+  +H P    D   T PAR 
Sbjct: 178 RVLETVDLGRIPELLTERIRAEAAAALDLDVPLPDTAQAYRDLHAPH---DVAATGPART 234

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVE-GKIAQKILRNIPFSPTKSQESAIKDIL 285
            LA  E L  Q AL   R + +     P     G + + +   +PF+ T  Q +  + + 
Sbjct: 235 ALALREALLVQAALAWRRDRERAVPATPRPPRAGGLLEALDARLPFALTPGQVAVGEQLS 294

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-- 343
            +++++  M R+LQGDVG+GKTLVAL AM   V+AGGQA ++AP  +LA QH+  + +  
Sbjct: 295 AELAREAPMSRLLQGDVGAGKTLVALRAMLQVVDAGGQAALVAPTEVLAAQHHRALLRLM 354

Query: 344 ----------YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
                             V ++TG++  A RR+AL  +A G+A I +GTHAL  + + + 
Sbjct: 355 GPLAEAGTLGAGDGPATRVVLVTGSLKTAARREALLALASGEAGIAVGTHALLSEKVGFA 414

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +L L +VDEQHRFGV QR  L +     H+L+M+ATPIPR++ +T  GD+D+S +   P+
Sbjct: 415 ELALAVVDEQHRFGVDQREALRRANPGTHLLVMSATPIPRSVAMTVFGDLDLSVLEGLPS 474

Query: 454 GRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIE----EKKESNFRSVVE 505
           GR+P+ T +  +      I  V E +   ++ G +A+ +CP+I+    +   +N   +  
Sbjct: 475 GRQPVTTHVARMAHGPRVIGRVWELIAEHVAAGHQAFVVCPRIDPDDTDPGHANVEEMTP 534

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           R   L       I  +HGRM   ++++ M +F  G   +L+ATTV+EVG+DV +A+++ +
Sbjct: 535 RLRGLPALAGLRIDAVHGRMDQAEQDAAMQAFARGETDVLVATTVVEVGVDVPNATVMAV 594

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            +A+ FGL+ LHQLRGRVGRG   + C+L    P    S  RL VL   +DG  IA+EDL
Sbjct: 595 LDADDFGLSTLHQLRGRVGRGPGAAVCLLATRLPDGYPSLRRLEVLAQEQDGMRIAQEDL 654

Query: 626 KQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
            QR  G++LG  QSG+              L+ +A      ++   P L++    +  + 
Sbjct: 655 AQRGVGDVLGAAQSGLASGLHHVDVIADAPLIAVAADAVAQVMAAGPGLSAHPALAAEVA 714

Query: 685 LYLYQYNEAFQFIRAG 700
            +  ++  A  ++  G
Sbjct: 715 RWEAEHLTAADYLEKG 730


>gi|169834949|ref|YP_001715629.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169409056|gb|ACA57466.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 662

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 201/619 (32%), Positives = 328/619 (52%), Gaps = 29/619 (4%)

Query: 37  NETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLND 96
           N     +L+ + PS ++D   +  I ++ + +  +I   I++ +  +++  +  K+   D
Sbjct: 21  NINSIEELVRFFPSKYLDFRKQQFIHQLIDGQTTSIAVTITKININKIK--QYIKVNAID 78

Query: 97  GTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIK---KLKNRIIMVHPHYIFHNSQDVN 152
             G  + L++F      +        K  V G +    K  N+I +++P YI  + +  N
Sbjct: 79  DFGAPLCLIWFNNI--FINKKLSINTKYIVCGTVSINYKYNNQIQIINPIYI--SKETEN 134

Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
           F  I  +YS   G+S +     I  AL  +    E++E++LL++    +  EA   IH P
Sbjct: 135 FKKIMPIYSKIAGMSYEYLTNSIESALKLIND-SEYLEENLLEQFKLQNEMEALINIHAP 193

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                 E    A+ R  +D L   Q   L  + +  K+            QK+L  +PF 
Sbjct: 194 LYK---EQIIGAKRRFIFDTLFQYQ-FQLENKNRKSKKKSEIKIRTLVEYQKLLDKLPFK 249

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T+ Q  AI  IL  M +  ++  +L  DVG+GKT++A + +   VE G Q V+MAP  +
Sbjct: 250 LTQDQIKAIDTILNQMQKNKKVNTLLTADVGAGKTVIAFLIIIILVENGYQGVLMAPTSV 309

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QH+    K   +T      I G +  + +++ L+ I  G  ++IIGTH++ Q  +++
Sbjct: 310 LAKQHFNEFNKLLCDTPFKACFINGTLKASEKKEILQGIKEGVYNVIIGTHSVIQKDVKF 369

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD-IDISKITEK 451
            KL + ++DE+HRFGV QR  L +K    H + M+ATPIPR+L LT  GD I+I  I   
Sbjct: 370 KKLGVAVIDEEHRFGVSQRAVLLEKTNNIHYVTMSATPIPRSLALTMYGDNIEIVTIKTM 429

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV---ERFN 508
           P GRKPIKT +I  N   +    +   + +G + Y++CP IE+    +  ++    + + 
Sbjct: 430 PNGRKPIKTALI--NNKKKAYNFMLKEIKKGHQCYFVCPLIEKSYCESMENIDSIEDIYK 487

Query: 509 SLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
            ++  F +    ++++ G+M +   +  ++ FKN   +++IATTVIEVGI+V +A+ I+I
Sbjct: 488 EMNTFFKNKDIKLSMVTGKMKEEQIDKEINKFKNNETQIIIATTVIEVGINVPNATTIVI 547

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            NAE FGLAQLHQLRGRVGR    S CIL+     S  +  RL V+  T DGF+IA +DL
Sbjct: 548 NNAERFGLAQLHQLRGRVGRSSLQSYCILI-----SSKNSERLQVMTTTNDGFIIANKDL 602

Query: 626 KQRKEGEILGIKQSGMPKF 644
           K R  G ++G +QSG  +F
Sbjct: 603 KLRGSGNLIGEEQSGKNEF 621


>gi|183601828|ref|ZP_02963197.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219682743|ref|YP_002469126.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190319|ref|YP_002967713.1| RecG-like helicase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195725|ref|YP_002969280.1| RecG-like helicase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218713|gb|EDT89355.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620393|gb|ACL28550.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248711|gb|ACS45651.1| RecG-like helicase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250279|gb|ACS47218.1| RecG-like helicase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|295793306|gb|ADG32841.1| RecG-like helicase [Bifidobacterium animalis subsp. lactis V9]
          Length = 790

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 229/792 (28%), Positives = 347/792 (43%), Gaps = 123/792 (15%)

Query: 9   LFAPLSTF---RGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  PL      +    +    L K+            D L Y+P    D      + +  
Sbjct: 12  LETPLHALLANK----RRVSALKKL------GVLDVRDALTYYPFRVTDPVPVRALVQAQ 61

Query: 66  EE--RIVTITGYISQHSSFQLQKRRPYK--ILLNDG--------TGEI-TLLFFYRKT-- 110
                 +     +       +  R  Y+  +L++D          G + TL+FF  +   
Sbjct: 62  PGLKEKMACAVRVRSVRVSPMNARAGYRVEVLVDDDEFAATLHVRGSLATLVFFSHRKSY 121

Query: 111 -EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE------------ 157
            + L         + + G      +R+   HP  +     ++   +              
Sbjct: 122 VDWLAGRLRVDGHVVIAGDPTMYMDRLQFTHPELLTVGGANLRADVSTVAEGLQRVCRPR 181

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRL----------------------------------- 182
            VY   + +S +     I+  L  L                                   
Sbjct: 182 PVYHANSRISSEHIHDTILYVLRLLAGEDPATAMHADDETAQPHMRTLYAENPQIREHLD 241

Query: 183 PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             +P+ +  +LL + +    A+AF+ IH+P     F           Y+E    Q AL+ 
Sbjct: 242 AAIPDILPGNLLAELNLMHRAQAFSQIHDPDSVGAFTQAITTMR---YEEAFVCQTALIR 298

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            R   ++      + + ++  + +  +PF  TK Q   + +I  DM Q + M R+LQG+V
Sbjct: 299 ARHDAREHNAYVCS-DVQLRDEYIDTLPFVLTKGQREVVDEISHDMCQDHPMQRLLQGEV 357

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA+ AM  AV +G QAV++AP  +LA+QHY+ I          V ++TG M  A
Sbjct: 358 GSGKTVVAVSAMLQAVGSGHQAVLVAPTQVLAEQHYQSISNVFNRAP--VLLLTGGMKLA 415

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAP 421
            RRK L   A G+  I++ THA F  S Q   L L ++DEQHRFGV+QR  L  +    P
Sbjct: 416 ERRKVLGTAASGEPCIVVATHAAFSKSFQAPNLALAVIDEQHRFGVEQRETLRSKSDVDP 475

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           H+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+TV+IP      + E    +   
Sbjct: 476 HLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIQTVVIPEENAPLMAEMFWHIRHR 535

Query: 482 ---GKKAYWICPQIEEKKE-----------------------------------SNFRSV 503
              G++AY +CP+IEE  E                                    +   +
Sbjct: 536 IDAGERAYIVCPRIEESTEDAEGGESGGDARADSDDGMLLSDEDLGETNARAPLHSVHEI 595

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            ER  SL +        + GR  D  KE VM  F +G   +++ATTVIEVG+DV  AS I
Sbjct: 596 SERLQSLPQFQGVRFCELTGRDDDETKERVMAEFASGQTPVMVATTVIEVGVDVPQASCI 655

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +I +A+ +GL+QLHQLRGRVGRG   S   L+     +  +  RL V+ ++ DG LIA++
Sbjct: 656 VIFDADRYGLSQLHQLRGRVGRGGTHSWAFLVSQAEPNSIAEQRLDVIAHSLDGALIAQK 715

Query: 624 DLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           DL+ R  G++LG  QSG      + +     +++  ARK A+ +L  DP L     Q   
Sbjct: 716 DLELRGAGDVLGDTQSGGRSSLKLLRVVKDAAMITDARKRAELLLDADPTLEHHT-QLAG 774

Query: 683 ILLYLYQYNEAF 694
            +L   + NE F
Sbjct: 775 AVLDFSRGNEKF 786


>gi|256545262|ref|ZP_05472627.1| ATP-dependent DNA helicase RecG [Anaerococcus vaginalis ATCC 51170]
 gi|256399089|gb|EEU12701.1| ATP-dependent DNA helicase RecG [Anaerococcus vaginalis ATCC 51170]
          Length = 659

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 180/604 (29%), Positives = 297/604 (49%), Gaps = 19/604 (3%)

Query: 38  ETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYK-ILLND 96
             +  DL  Y+P  + DR  +  +S   +         I         K+     +  ++
Sbjct: 22  IYKLEDLYNYYPREYEDRSKKYDLSHGLDGNKHYFEWKIESKLYTNYSKKFSISYLYASE 81

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156
               I ++FF  K          G+      KI K    I   +P +   +  D     I
Sbjct: 82  NDKRIKIVFFNDK--FSPRSLKIGQTYKFYTKIVKNGYEIECHNPEF--TDIDDDRIGNI 137

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
             +Y L   L+       I +AL         ++K +L   +F         IH P   +
Sbjct: 138 VPIYPLTKSLTNKNLSDFIGQALEFFDENEVLLDKKVLDDFNFSDKLSNLKEIHFPTSLE 197

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
           + +      +    D L       ++ ++   +++ +  N        IL  + F  T S
Sbjct: 198 NLKNAKSQIK--IIDLLKELIFIYVMQKENSYQDLNLKYN-----LNDILNKLDFKLTPS 250

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  ++ +IL+D + K+ M R+L GDVGSGKT++ALI M        Q  +M P  +LA Q
Sbjct: 251 QYKSLIEILKDSTSKSIMNRLLCGDVGSGKTIIALIVMIIFSINSYQTCMMVPTEVLAIQ 310

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            YE  K++ ++  + + ++T +       K   +I +G+  I+IGTHAL  D +++  L 
Sbjct: 311 QYEKNKEFVESFGLKISLLTSSTKNKEDLK--NKIKNGEIDIVIGTHALIVDDVEFKNLK 368

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L++ DEQHRFGV+QR  L +K    + L MTATPIPRTL L     +D+S+ITE P GR 
Sbjct: 369 LIVADEQHRFGVRQRQALYEKGNDANYLTMTATPIPRTLFLKMKKLLDLSQITELPKGRG 428

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I T ++ ++  + +  ++   +  G++ Y +   IE    ++  ++ +R+    ++   
Sbjct: 429 EIITELVLLSMENSLFSKIDDFIKSGRQVYVVSDSIESDDINSLENLYKRYKKRFKNI-- 486

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I  +HG++   +KE ++  F +G   +LI+TTVIEVGIDV +A+ +II NA +FGL+ L
Sbjct: 487 RIEKLHGKLKASEKEEILRDFSDGKIDILISTTVIEVGIDVSNANCMIIYNANNFGLSSL 546

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGR+GRG   S C L+       +  ++L+++KN+ DGF IA++DLK R  G+IL  
Sbjct: 547 HQLRGRIGRGSYKSFCYLI---SEKVDERSKLNIIKNSNDGFEIAKKDLKLRGAGKILST 603

Query: 637 KQSG 640
            Q G
Sbjct: 604 IQHG 607


>gi|218514909|ref|ZP_03511749.1| ATP-dependent DNA helicase protein [Rhizobium etli 8C-3]
          Length = 431

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 192/416 (46%), Positives = 260/416 (62%), Gaps = 2/416 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K++      + R IDLLF+ P + IDR  +P 
Sbjct: 16  MRPAILDPLFSPISGLPGVGPKIAELLVKLLGRETPEDCRVIDLLFHAPFALIDRRNQPG 75

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 76  IARAPQGAIVTITARVDRHQVPPRGKSNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPI 135

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GK+     R  MVHP YI    +  N PL+E +Y L  GLS    +KII  AL
Sbjct: 136 DAEVTVSGKVDWFNGRASMVHPDYIVRAEEAENLPLVEPIYPLTAGLSPKTLRKIIDAAL 195

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA-YDELLAGQI 238
            R P LPEWI+  L QK+  P      +     R  +      P R   + YDE LAGQ+
Sbjct: 196 PRFPELPEWIDPALAQKQGLPFYPRQLSTCCMSRATRPISTRRPRRGGGSPYDEFLAGQL 255

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           +L L+R++ +K  G P+   G ++ KIL+ +PFSPT SQ  AI DIL+DM+   RMLR+L
Sbjct: 256 SLSLVRQRLRKVAGQPVLATGAVSGKILKTLPFSPTSSQNEAIADILKDMAGTERMLRLL 315

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKTLVAL++MAA +E+GGQAV+MAP  ILA+QH+  I K+  +  + +E++TG 
Sbjct: 316 QGDVGSGKTLVALMSMAAVIESGGQAVLMAPTEILARQHHATISKFAASAGLGIEVLTGR 375

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
                R + LERIA G A I+IGTHALFQDS+ Y KL+L +VDEQHRFGV QRL+L
Sbjct: 376 TKGREREEILERIASGAAQIVIGTHALFQDSVTYDKLMLAVVDEQHRFGVHQRLRL 431


>gi|47093048|ref|ZP_00230826.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes str. 4b
           H7858]
 gi|47018549|gb|EAL09304.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes str. 4b
           H7858]
          Length = 542

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/536 (32%), Positives = 283/536 (52%), Gaps = 22/536 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 23  PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 75

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 76  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKISVGETVTISGKW 133

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
            K + ++           S++     +E VY L   L     +K    A       + E 
Sbjct: 134 DKSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 189

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P+  ++      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 190 IPSNLLEKYQLMDRLEAVRILHFPKNNEEL---KQARRRMVYEEFLLFQLKMQFFRKIER 246

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 247 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 306

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 307 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 366

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 367 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 426

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y 
Sbjct: 427 ATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYI 486

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGT 541
           ICP I E ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F N  
Sbjct: 487 ICPLIGESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNNKK 542


>gi|307264815|ref|ZP_07546377.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920073|gb|EFN50285.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 432

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 187/428 (43%), Positives = 273/428 (63%), Gaps = 3/428 (0%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF  T +Q   +K+I+ DM+    M R++QGDVGSGKT+VA  +M  AV+ G Q  +MA
Sbjct: 3   LPFKLTSAQIKVLKEIIADMNSHKVMNRLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMA 62

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QHY  +K+  +NT I + +++G++  +++++ LE+I  G   I++GTHAL +D
Sbjct: 63  PTEILAKQHYYTLKELFKNTDIKIGLLSGSISPSNKKEVLEKIKSGDYDIVVGTHALIED 122

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + +  L L I DEQHRFGV+QR  LTQK   P VL+MTATPIPRTL L   GD+DIS I
Sbjct: 123 DVIFNNLGLCITDEQHRFGVRQRALLTQKGENPDVLVMTATPIPRTLALILYGDLDISII 182

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            + P GRK +KT +I  +   +  E     + +G++ Y +CP IEE  + N  S    + 
Sbjct: 183 DQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQVYVVCPLIEESDKINAMSAEIVYR 242

Query: 509 SLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +++     + + ++HG+M+D DKE +M+ F NG   +L++TTVIEVG++V +A+++I+E
Sbjct: 243 EIYKDAFKEAKVGLLHGKMADSDKEKIMEEFVNGKIDILVSTTVIEVGVNVPNATVMIVE 302

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           NAE FGLAQLHQLRGRVGR E  S CIL+ +   S  +  RL VL  T DGF IAE+DL+
Sbjct: 303 NAERFGLAQLHQLRGRVGRSEFQSYCILISYSN-SDIAKKRLGVLAQTSDGFKIAEKDLE 361

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE LG++Q G+P+F IA       +L+  +KD + +L +DP L +       +L  
Sbjct: 362 IRGPGEFLGLRQHGLPEFKIANIFEDIDVLKRVQKDVEELLEKDPKLENYPKLRSILLNQ 421

Query: 687 LYQYNEAF 694
            YQ  E  
Sbjct: 422 FYQKLEGI 429


>gi|224108331|ref|XP_002314808.1| predicted protein [Populus trichocarpa]
 gi|222863848|gb|EEF00979.1| predicted protein [Populus trichocarpa]
          Length = 888

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 216/765 (28%), Positives = 359/765 (46%), Gaps = 100/765 (13%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+S   G+  +    L       N        LL + P ++ D         I + +
Sbjct: 133 LDKPISCLPGLSTRQRRQLE------NCGFYTLRKLLQHFPRTYADLQNAH--FGIDDGQ 184

Query: 69  IVTITGYISQHSSFQLQKRRPY-KILLN------------DGTGE-------ITLLFFYR 108
            +   G ++   + +      + ++++             D           + L  ++R
Sbjct: 185 YLISVGKVTSSRAVKASYSLAFAEVIVACEIINNESKHLIDDNNSGGKKTIYLHLKKYFR 244

Query: 109 KT-----EMLKN---VFFEGRKITVTGKIKKL---KNRIIMVHPHYIFHNSQDVNFPLIE 157
            T       LK        G  + V+GK++ +    +   +   +      ++ +  ++E
Sbjct: 245 GTRFTCLPFLKKVEAKHKLGDVVCVSGKVRTMSTKGDHYEIREYNIDVLEDREDSSSIVE 304

Query: 158 ----AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
                +Y    GL+ D  +  I  A+  L    + I K+++Q      + EA+  IH P+
Sbjct: 305 GRPYPIYPSKGGLNPDFLRDTISRAVRALLADVDPIPKEIIQDFGLLRLHEAYIGIHQPK 364

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALL---------------LMRKQFKKEIGIPINVE 258
            A + +     R+RL +DE    Q+  L               L+ K  K E+      E
Sbjct: 365 NADEADLA---RKRLIFDEFFYLQLGRLFQMLEGLGSRMEKDGLLDKYSKPELNAVYVEE 421

Query: 259 GKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
                +K L+ +P+S T SQ SA   I+ D+ +   M R+LQGDVG GKT+VA +A    
Sbjct: 422 WSNLTKKFLKALPYSLTSSQLSASSQIIWDLKRPVPMNRLLQGDVGCGKTIVAFLACMEV 481

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-----VEIITGNMPQAHRRKALERIA 372
           + +G QA  M P  +LA QHYE +    +    +     V ++TG+ P    R     + 
Sbjct: 482 IGSGYQAAFMVPTELLAIQHYEQLLNLLETMGEVQSKPSVALLTGSTPSKQSRMIRRDLQ 541

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT----------------- 415
            G   ++IGTH+L  +++++  L + +VDEQ RFGV QR +                   
Sbjct: 542 SGDISMVIGTHSLISENVEFSALRIAVVDEQQRFGVIQRGRFNSKLYHSPLSSRMSASNT 601

Query: 416 ------QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467
                     APHVL M+ATPIPRTL L   GD+ +++IT+ P GR P++T I   N   
Sbjct: 602 DTSSEGDFHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRVPVETYIFEGNYDG 661

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFTS-SIAIIHGRM 525
            ++V + ++  L  G + Y + P IE+ ++    R+       +   F   +  ++HG+M
Sbjct: 662 FEDVYKMMRDELEAGGRVYLVYPVIEQSEQLPQLRAAAADLEVISHRFQDYNCGLLHGKM 721

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              DK+  +  F++G   +L++T VIE+G+DV DAS++++ NAE FG+AQLHQLRGRVGR
Sbjct: 722 KSDDKDEALKRFRSGVTHILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGR 781

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKF 644
           G   S C+L+     + +S  RL VL+ + DGF +A  DL  R  G++LG KQSG +P+F
Sbjct: 782 GARKSKCLLVAS---TTSSLDRLKVLEKSSDGFYLANMDLLLRGPGDLLGKKQSGHLPEF 838

Query: 645 LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
            IA+ E+  ++L+ A   A  +L +  DL   R  +++  L + Q
Sbjct: 839 PIARLEIDGNILQEAHAAALKVLGESHDLE--RFPALKAELSMRQ 881


>gi|222623538|gb|EEE57670.1| hypothetical protein OsJ_08114 [Oryza sativa Japonica Group]
          Length = 946

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 209/736 (28%), Positives = 356/736 (48%), Gaps = 93/736 (12%)

Query: 33  CGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP-YK 91
             +        LL + P ++ D         I E + + + G +      +L+      +
Sbjct: 208 LEDGGFHTVRKLLQHFPRTYADLQN--PQGSIEEGQYIMLFGTVVSSRGARLKHTLGYLE 265

Query: 92  ILLN---------------------DGTGEITLLFFYRKTEM--------LKNVFFEGRK 122
           ++++                       T  + L  F+  T          + + + EG  
Sbjct: 266 VVVSCSIIESELSSSVKSCNSQAEQKKTIHLHLKKFFSGTRFSSPSFLKCISSKYKEGDL 325

Query: 123 ITVTGKIKKL--KNRIIMVHPHYIFHNSQDVNFPLIE----AVYSLPTGLSVDLFKKIIV 176
             V+GKIKK   K+   +          ++    L++     +Y    GL   L    I 
Sbjct: 326 AYVSGKIKKALTKDHYDLREYTIDMLEEEEQQCTLLDRKPYPIYPSKAGLKPSLLSLSIS 385

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            AL  L    + +  ++L + + P++ +A+  IH P+   + ++    R RL +D+    
Sbjct: 386 RALKMLTPDIDPMPHEVLVEFNLPNLFDAYMGIHKPKNRDEADFA---RRRLIFDDFFYL 442

Query: 237 QIALL----------------LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
           Q+  L                L++ +  +   +  +    +A+K+L+ +P+  T SQ +A
Sbjct: 443 QLGRLFQMLEAVGTRVEKEELLLKCKNHELNAVGADEWSPLARKLLKVLPYLLTPSQLNA 502

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           +K+I+ D+ +   M R+LQGDVG GKT+VA +A    + +G QA  M P  +LA QHYE 
Sbjct: 503 VKEIIWDLRRPVPMNRLLQGDVGCGKTVVAFLACMEVISSGFQAAFMVPTEVLALQHYEH 562

Query: 341 IKKYTQNT-----QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           +    +       +  + ++TG+      R     +  G+  ++IGTH+L  D  ++  L
Sbjct: 563 LTSLLEKFDGDECKPNIALLTGSTSTRESRIIRNGLKTGEIAMVIGTHSLIGDKTEFSAL 622

Query: 396 ILVIVDEQHRFGVQQRLKL-----------------------TQKATAPHVLLMTATPIP 432
            + ++DEQ RFGV QR +                        ++   APHVL M+ATPIP
Sbjct: 623 RISVIDEQQRFGVVQRGRFNSKLYTPSTKSSDDDTISDENSASEIFMAPHVLAMSATPIP 682

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICP 490
           RTL L   GD+ +++IT+ P GR+PI+T+ +  N    + V + +   L +G K Y + P
Sbjct: 683 RTLALALYGDMSLTQITDLPPGRQPIETLALEGNDAGFESVFQMMSDELVDGGKVYLVYP 742

Query: 491 QIEEKKE-SNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            IEE ++     +    F+S+ + F      ++HGRM   +K+  + SF++G  ++L++T
Sbjct: 743 IIEESEQLPQLHAAKAEFDSIKQKFEGYPCGLLHGRMRSDEKDGALSSFRSGETRILLST 802

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            VIE+G+DV DAS++++ NAE FG++QLHQLRGRVGRGE  S C+ L   P   ++  RL
Sbjct: 803 QVIEIGVDVPDASMMVVMNAERFGMSQLHQLRGRVGRGERKSRCVFLCSTP---SALPRL 859

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHIL 667
            VL+ + DGF +A  DL  R  G++LG KQSG +P+F IA+ E+  S+L+ A   A ++L
Sbjct: 860 KVLEKSSDGFYLANADLLLRGPGDLLGKKQSGHLPEFPIARLEIDGSILQEAHLAALNVL 919

Query: 668 TQDPDLTSVRGQSIRI 683
               DL    G  + +
Sbjct: 920 GTSNDLAQFPGLKVEL 935


>gi|256752285|ref|ZP_05493148.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748853|gb|EEU61894.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 432

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 187/428 (43%), Positives = 275/428 (64%), Gaps = 3/428 (0%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF  T +Q   +K+I+ DM+    M R++QGDVGSGKT+VA  +M  AV+ G Q  +MA
Sbjct: 3   LPFKLTLAQIKVLKEIIADMNSHKVMNRLVQGDVGSGKTVVAACSMYIAVKNGYQVAMMA 62

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QHY  +K+  +NT I + +++G++  +++++ LE+I +G   I++GTHAL +D
Sbjct: 63  PTEILAKQHYHTLKELFRNTDIKIGLLSGSISPSNKKEVLEKIKNGDYDIVVGTHALIED 122

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           ++ +  L L I DEQHRFGV+QR  LTQK   P VL+MTATPIPRT  L   GD+DIS I
Sbjct: 123 NVIFNNLGLCITDEQHRFGVRQRALLTQKGENPDVLVMTATPIPRTFALILYGDLDISII 182

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            + P GRK +KT +I  +  ++  E     + +G++ Y +CP IEE  + N  S    + 
Sbjct: 183 DQLPPGRKKVKTYVISSSVREKAYEFAMKEVKKGRQVYVVCPLIEESDKINAMSAEIVYR 242

Query: 509 SLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +++     + + ++HG+M+D DKE VM+ F NG   +L++TTVIEVG++V +A+++I+E
Sbjct: 243 EIYKDAFKEAKVGLLHGKMADSDKEKVMEEFVNGKIDILVSTTVIEVGVNVPNATVMIVE 302

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           NAE FGLAQLHQLRGRVGR E  S CIL+ +   S  +  RL VL  T DGF IAE+DL+
Sbjct: 303 NAERFGLAQLHQLRGRVGRSEFQSYCILISYSN-SDIAKKRLGVLAQTSDGFKIAEKDLE 361

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE LG++Q G+P+F IA       +L+  +KD + +L +DP L +       +L  
Sbjct: 362 IRGPGEFLGLRQHGLPEFKIANIFEDIDVLKRVQKDVEELLEKDPKLENYPKLRSILLNQ 421

Query: 687 LYQYNEAF 694
            YQ  E  
Sbjct: 422 FYQKLEGI 429


>gi|311113805|ref|YP_003985027.1| ATP-dependent DNA helicase [Rothia dentocariosa ATCC 17931]
 gi|310945299|gb|ADP41593.1| ATP-dependent DNA helicase [Rothia dentocariosa ATCC 17931]
          Length = 1119

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 201/669 (30%), Positives = 327/669 (48%), Gaps = 76/669 (11%)

Query: 97   GTGEI----TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDV 151
            GTG +     L FF   T         G  +  +GK+   +    + +PHY +  +  + 
Sbjct: 452  GTGRVGSTMKLSFFNAWTA--AREIHAGETMMFSGKVGIYRGEYTLTNPHYALLSDDGNA 509

Query: 152  NFP----LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEA 205
            N P        VY  P  L  D     I + +  +P+  L + I   + + +  PS+   
Sbjct: 510  NTPERAEAPIPVYRAPVKLPTDRIATAIAQLIESVPLKELEDPIPYKIRRARKVPSLEWT 569

Query: 206  FNIIHNPRKAKDF-EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
            +  +H P     +    +  R R A+    A         +     +  P   +G  A  
Sbjct: 570  YRALHTPDSEDTWRAAQAQMRYREAFVLQSALARLHAA--RAAHATVARPALPDGA-ADA 626

Query: 265  ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
            +L  +P+  T+ Q+   K+I +D++  + M R+LQGDVGSGKT+VAL AM    ++GGQ+
Sbjct: 627  LLNVLPYELTEGQQRVGKEISRDLASPSPMNRLLQGDVGSGKTVVALRAMLQVADSGGQS 686

Query: 325  VIMAPIGILAQQHYEFIKKYTQN---------------------------TQIIVEIITG 357
             ++AP  +LA+QH+  I     +                            ++ V +++ 
Sbjct: 687  AMLAPTEVLAEQHFRSILDILGDLADTEGIPGYETTLFRPQNQKESKKPAHRVRVRLLSA 746

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-Q 416
            +MP AH+R  L  IA G A ++IGTHAL  D++ +  L +V+VDEQHRFGV+QR  L   
Sbjct: 747  SMPSAHKRAVLAEIADGTADVVIGTHALLSDTVTFRDLGMVVVDEQHRFGVEQRDSLRGN 806

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI----DEVI 472
                PH L+MTATPIPRT+ +T  GD+D+S + + PAGR+   T ++P+       D + 
Sbjct: 807  NGELPHRLVMTATPIPRTVAMTVFGDLDVSVLDQLPAGRQQTATHVVPLAEKPTWADRLW 866

Query: 473  ERLKVVLSEGKKAYWICPQIEEKKES-------------------NFRSVVERFNSLHEH 513
             R +  +  G + Y + P+I +  E                    + ++ +    ++  +
Sbjct: 867  TRAREEIDAGHQVYVVVPKIGDDDEELEEGQQLFGDAGREGSQSSDGKTRLTSVTAMTAY 926

Query: 514  FTS-------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                       IA +HGRM   +K +VM +F+ G   +L++TTVIEVG++V +A++++I 
Sbjct: 927  LKQNPALTGTRIASLHGRMDPEEKTAVMTAFERGEIDILVSTTVIEVGVNVPNATLMMIM 986

Query: 567  NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
            +A+ FG++ LHQLRGRVGRG    +C+L+        S  RL  +  T DGF +++ DL+
Sbjct: 987  DADRFGISGLHQLRGRVGRGGFAGTCLLVTRQQAGGVSRERLDAVAATTDGFKLSQIDLQ 1046

Query: 627  QRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            QR+EG+ILG  QSG        +     +++E AR+DA+ ++  DP L      +  I  
Sbjct: 1047 QRREGDILGAAQSGKKSTLKFLRALADATIIERAREDARALIAADPTLAKHPNLARTIDR 1106

Query: 686  YLYQYNEAF 694
             L    EAF
Sbjct: 1107 ALDADREAF 1115



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
             +  L   ++      +   +LL Y P  ++ R    + +++ E + VTI   ++  S+
Sbjct: 300 ATARALKTHLS-----ISTVGELLEYFPRKYLPRGELSRFADLVEGQDVTIIARVTNVST 354

Query: 82  FQL--QKRRPYKILLND 96
             +  ++ +  ++ + D
Sbjct: 355 RTMAARRGKITEVTITD 371


>gi|297242906|ref|ZP_06926844.1| RecG-like helicase [Gardnerella vaginalis AMD]
 gi|296889117|gb|EFH27851.1| RecG-like helicase [Gardnerella vaginalis AMD]
          Length = 812

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 220/775 (28%), Positives = 357/775 (46%), Gaps = 122/775 (15%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P           + ++     V     +   +   +  R
Sbjct: 29  RRVSALKSLGIVTVEDALTYYPFRVTSPLRIANLKDVKIGEEVAFYAQVQSINVVPMNAR 88

Query: 88  RPYKI---LLNDGTGEITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
           R ++I   +L D      L++F    +  + L         + V G       ++   HP
Sbjct: 89  RGFRIEINVLQDMQAVAQLIYFSKNRQYAQWLSAKMHVDEMVVVGGTSSAFNGKLQFTHP 148

Query: 142 HYIFHNSQDVNFPLIE-------------------AVYSLPTGLSVDLFKKIIVEALSRL 182
             +  ++ + +  L +                    VY   + +S +   + I+  LS L
Sbjct: 149 QILTVSAVEESDSLHQSRDTVRSVEDGLARMSAPMPVYHANSRISSEHIHETILSILSAL 208

Query: 183 P--------------------------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
                                       +P    + +L+K++  + A A   IHNP+   
Sbjct: 209 SKDSEDFAASAASAASKNSATCTTESLQIPNITPESVLKKRNLMTRASAIYSIHNPQSVD 268

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
           +F     A + L Y+E    Q+A+L  R+  K       N    I  + + ++PF  T  
Sbjct: 269 EF---YKAVDSLRYEEAFISQVAVLRSREDSKDNQAKSCN-NSLIRNEFVESLPFELTAG 324

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+  I +I++DM +++ M R+LQG+VGSGKT+VAL AM  AV +G QAV++AP  +LA Q
Sbjct: 325 QKDVIDEIVRDMRERHPMRRLLQGEVGSGKTVVALAAMLEAVGSGYQAVLVAPTQVLASQ 384

Query: 337 HYEFIKKY--TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           H E +++     N ++ V ++TG M  A RR+AL  +A G+  +I+ THA F  + +   
Sbjct: 385 HAENLRQMIARANLKVPVIVVTGGMRLADRRRALASVASGEPSLIVATHAAFSSTFKPTN 444

Query: 395 LILVIVDEQHRFGVQQRLKLTQKAT-----------APHVLLMTATPIPRTLVLTSLGDI 443
           L LVI+DEQHRFGV+QR  L +K +            PH+L+MTATPIPR+  +T  GD+
Sbjct: 445 LALVIIDEQHRFGVEQRDVLLRKMSVDPHDSAEKSFTPHLLVMTATPIPRSAAMTWFGDL 504

Query: 444 DISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIEE------ 494
           D S +TE P GRKPI+T ++     N +  +   ++  +  G++AY +C  I++      
Sbjct: 505 DASYLTELPGGRKPIRTFVVQESDANTMARMFAHIRARIDAGERAYVVCAHIDDDFNEDS 564

Query: 495 --------------------------------------------KKESNFRSVVERFNSL 510
                                                       +K      +++R ++L
Sbjct: 565 GRDSASGSASGSARDFDSDESEGFEDVSQSVQSNQSEENSADSLRKLHTVNGILKRLSAL 624

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            +    + A + GR  D  K   M+ F  G  ++L+ATTVIEVG+DV  AS I+I +A+ 
Sbjct: 625 PQFKGVTFAKLTGRDDDATKRETMEHFARGDVQVLVATTVIEVGVDVPQASCIVIFDADR 684

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           FGLAQLHQLRGRVGRG   S   L+        +  RL V++N+ DG +IA++DL+ R  
Sbjct: 685 FGLAQLHQLRGRVGRGGTNSWAFLVAQTEDGSLAQERLQVVENSLDGAVIAKKDLELRNV 744

Query: 631 GEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           G++LG KQSG      I +      ++ +AR+DA   L +D  L S+   +  +L
Sbjct: 745 GDVLGDKQSGGRSSLKILRVVKDAKIIAMAREDALETLQKDAHLVSLPYLAGAVL 799


>gi|323342033|ref|ZP_08082266.1| DNA helicase RecG [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464458|gb|EFY09651.1| DNA helicase RecG [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 652

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 185/644 (28%), Positives = 308/644 (47%), Gaps = 27/644 (4%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ-HSSFQLQK 86
            ++              L   P  +  R              V  +G +     +F  ++
Sbjct: 6   KQLKIIETYGADTPESFLMVFPYRYE-RLEAKPRDAWRPGDTVVFSGRLLGGFKNFTFRR 64

Query: 87  RR---PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            +    +K++  D    + +  F R+            +    G +              
Sbjct: 65  NQSVTNFKVVFQDE--IVPVAIFNRRY--------LNTRHYEHGIVVVGVVGKEGNITAK 114

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
              N    +   I+ +YS  +G+     +++I++ +  +  LP  I  +   +       
Sbjct: 115 TVSNKDIQDIVGIKPIYSQKSGIKQYEIERLILKIMENVS-LPNIIPVEFQDQYKLMDRF 173

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263
           +A   IH PR   +          L Y+E LA  +++ L     +  +         + +
Sbjct: 174 DAVKSIHMPRSETEL---HHGLRTLKYEEFLAYHLSITLNNSDREYGVSKLFERAKVLEE 230

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
             +  +PF  T  Q+ ++ DIL D+    +M R+LQGDVGSGKT+VA +A  A   AG Q
Sbjct: 231 --IEILPFKLTVDQKQSLDDILNDLESSKKMNRLLQGDVGSGKTVVAFLAAYANYLAGYQ 288

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
              M P  +L  QH    +K   +   +V     +    HR   ++ I  G+A +I GTH
Sbjct: 289 VAFMVPTELLLMQHVRSFQKLFPDINCVVL----SQGIDHRDDVIQAIGTGEASVIFGTH 344

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
           ALFQ  + ++ L L I+DEQHRFGV+QR  L  K      L+++ATPIPRTL  +   D+
Sbjct: 345 ALFQKDVVFHNLGLAIIDEQHRFGVEQRRALITKGKRIDTLMLSATPIPRTLAASLFFDL 404

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           D+S I   P+ RK I+T  I  N +  +++ +   L   ++ Y +C  IEE + +  ++V
Sbjct: 405 DVSTIATYPSHRKEIETHWIHENSLRSIMKPIHDRLKNQEQIYIVCAAIEEGERAGVKNV 464

Query: 504 VERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
                +L   F+S ++  +HG+M    K S M SF +G   +LI+T+VIEVG+DV +A++
Sbjct: 465 HTICENLKPVFSSYNVDFVHGKMPSELKASKMQSFVSGDIDILISTSVIEVGLDVHNANM 524

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           +II NAE FGLA LHQLRGRVGRG +   C LL      + ++  ++ L ++ DGF ++ 
Sbjct: 525 MIIYNAEQFGLATLHQLRGRVGRGGKQGVCYLLSSNESDETAHR-MNALVSSHDGFELSM 583

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            D++ R  G++LG +QSG+P F++      +++L+ A+ DA  I
Sbjct: 584 IDMRLRGFGDVLGQRQSGLPNFILGDIIKDENILKQAKTDAIAI 627


>gi|300741702|ref|ZP_07071723.1| ATP-dependent DNA helicase RecG [Rothia dentocariosa M567]
 gi|300380887|gb|EFJ77449.1| ATP-dependent DNA helicase RecG [Rothia dentocariosa M567]
          Length = 763

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 200/669 (29%), Positives = 326/669 (48%), Gaps = 76/669 (11%)

Query: 97  GTGEI----TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY-IFHNSQDV 151
           GTG +     L FF   T         G  +  +GK+   +    + +PHY +  +  + 
Sbjct: 96  GTGRVGSTMKLSFFNAWTA--AREIHAGETMMFSGKVGIYRGEYTLTNPHYALLSDDGNA 153

Query: 152 NFP----LIEAVYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEA 205
           N P        VY  P  L  D     I + +  +P+  L + I   + + +  PS+   
Sbjct: 154 NAPERAEAPIPVYRAPVKLPTDRIATAIAQLIESVPLKELEDPIPYKIRRARKVPSLEWT 213

Query: 206 FNIIHNPRKAKDF-EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
           +  +H P     +    +  R R A+    A               +  P   +G  A  
Sbjct: 214 YRALHTPDSEDTWRAAQAQMRYREAFVLQSALARLHAAR--AAHATVARPALPDGA-ADA 270

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +L  +P+  T+ Q+   K+I +D++  + M R+LQGDVGSGKT+VAL AM    ++GGQ+
Sbjct: 271 LLNVLPYELTEGQQRVGKEISRDLASPSPMNRLLQGDVGSGKTVVALRAMLQVADSGGQS 330

Query: 325 VIMAPIGILAQQHYEFIKKYTQN---------------------------TQIIVEIITG 357
            ++AP  +LA+QH+  I     +                            ++ V +++ 
Sbjct: 331 AMLAPTEVLAEQHFRSILDILGDLADTEGIPGYETTLFHPQNQKESKKPAHRVRVRLLSA 390

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-Q 416
           +MP AH+R  L  +A G A ++IGTHAL  D++ +  L +V+VDEQHRFGV+QR  L   
Sbjct: 391 SMPSAHKRAVLAELADGTADVVIGTHALLSDAVTFRDLGMVVVDEQHRFGVEQRDSLRGN 450

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVI 472
               PH L+MTATPIPRT+ +T  GD+D+S + + PAGR+   T ++P+       D + 
Sbjct: 451 NGELPHRLVMTATPIPRTVAMTVFGDLDVSVLDQLPAGRQQTATHVVPLVEKPTWADRLW 510

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKES-------------------NFRSVVERFNSLHEH 513
            R +  +  G + Y + P+I +  E                    + ++ +    ++  +
Sbjct: 511 TRAREEIDAGHQVYVVVPKIGDDDEELEEGQQLFGDAGREGSQSSDGKTRLTSVTAMTAY 570

Query: 514 FTS-------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                      IA +HGRM   +K +VM +F+ G   +L++TTVIEVG++V +A++++I 
Sbjct: 571 LKQNPALTGTRIASLHGRMDPEEKTAVMTAFERGEIDILVSTTVIEVGVNVPNATLMMIM 630

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           +A+ FG++ LHQLRGRVGRG    +C+L+        S  RL  +  T DGF +++ DL+
Sbjct: 631 DADRFGISGLHQLRGRVGRGGFAGTCLLVTRQQAGGVSRERLDAVAATTDGFKLSQIDLQ 690

Query: 627 QRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           QR+EG+ILG  QSG        +     +++E AR+DA+ ++  DP L      +  I  
Sbjct: 691 QRREGDILGAAQSGKKSTLKFLRALADATIIERAREDARALIAADPTLAKHPNLARTIDR 750

Query: 686 YLYQYNEAF 694
            L    EAF
Sbjct: 751 ALDADREAF 759


>gi|315303712|ref|ZP_07874226.1| ATP-dependent DNA helicase RecG [Listeria ivanovii FSL F6-596]
 gi|313627925|gb|EFR96544.1| ATP-dependent DNA helicase RecG [Listeria ivanovii FSL F6-596]
          Length = 457

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 180/445 (40%), Positives = 284/445 (63%), Gaps = 3/445 (0%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            + + +K  GI IN + +  ++ + ++PF+ TK+Q+  + +I  DM     M R+LQGDV
Sbjct: 2   RKIEREKSGGISINYDVEDLRQYIDSLPFALTKAQKRVVNEICGDMLSHFHMNRLLQGDV 61

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           GSGKT+VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   + V ++T ++   
Sbjct: 62  GSGKTVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDVTVGLLTSSVKGK 121

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            R++ L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P 
Sbjct: 122 RRKELLAMLENGSVDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRILREKGAYPD 181

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +G
Sbjct: 182 VLFMTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHEMLDRVIGFMEKEIDKG 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNG 540
            + Y ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F + 
Sbjct: 242 HQVYIICPLIEESEKLDVQNAIDVFNILQNKWGTKYRPGLMHGKLLPADKEQIMRDFNDK 301

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P  
Sbjct: 302 KIDCLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK- 360

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           ++    R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEIAR
Sbjct: 361 TEVGKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIAR 420

Query: 661 KDAKHILTQDPDLTSVRGQSIRILL 685
           +DA H++ ++  L + + + +  LL
Sbjct: 421 QDAVHMIFEENMLENNQYEKLVALL 445


>gi|283782816|ref|YP_003373570.1| putative ATP-dependent DNA helicase RecG [Gardnerella vaginalis
           409-05]
 gi|283441748|gb|ADB14214.1| putative ATP-dependent DNA helicase RecG [Gardnerella vaginalis
           409-05]
          Length = 792

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 224/787 (28%), Positives = 358/787 (45%), Gaps = 128/787 (16%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P           + ++     V     +   +   +  R
Sbjct: 13  RRVSALKSLGIVTVEDALTYYPFRVTSPLRIANLKDVKIGEEVAFYAQVQSINVVPMNAR 72

Query: 88  RPYKI---LLNDGTGEITLLFF---YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
           R ++I   +L D      L++F    +  + L      G  + V G       ++   HP
Sbjct: 73  RGFRIEINVLQDMQVVAQLIYFSKNRQYAQWLSAKMHVGEMVVVGGMSSAFNGKLQFTHP 132

Query: 142 HYIFHNSQDVNFPLIE-------------------AVYSLPTGLSVDLFKKIIVEALSRL 182
             +  ++ + +  L +                    VY   + +S +   + I+  LS L
Sbjct: 133 QILTVSAAEESDSLHQSRDTVRSVEDGLVRMSAPMPVYHANSRISSEHIHETILSMLSAL 192

Query: 183 P--------------------------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
                                       +P    + +L+K++  + A A   IHNP+   
Sbjct: 193 SEDSASSAASASSAASASSAACATESLQIPNITPESVLKKRNLMTRASAIYSIHNPQSVD 252

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
           +F     A + L Y+E    Q+A+L  R+  K       N    I  + + ++PF  T  
Sbjct: 253 EF---YKAVDSLRYEEAFISQVAVLRSREDSKDNQAKSCN-NSLIRNEFVESLPFELTAG 308

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+  I +I++DM + + M R+LQG+VGSGKT+VAL AM  AV +G QAV++AP  +LA Q
Sbjct: 309 QKDVIDEIVRDMREHHPMRRLLQGEVGSGKTVVALAAMLEAVGSGYQAVLVAPTQVLASQ 368

Query: 337 HYEFIKKY--TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           H E +++     N ++ V ++TG M  A RR+AL  +A G+  +I+ THA F  + +   
Sbjct: 369 HAENLRQMITRANLKVPVIVVTGGMRLADRRRALASVASGEPSLIVATHAAFSSTFKPTN 428

Query: 395 LILVIVDEQHRFGVQQRLKLTQKAT-----------APHVLLMTATPIPRTLVLTSLGDI 443
           L LVI+DEQHRFGV+QR  L +K +            PH+L+MTATPIPR+  +T  GD+
Sbjct: 429 LALVIIDEQHRFGVEQRDVLLRKMSVDSHNSAEKSFTPHLLVMTATPIPRSAAMTWFGDL 488

Query: 444 DISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQIEE------ 494
           D S +TE P GRKPI+T ++     N +  +   ++  +  G++AY +C  I++      
Sbjct: 489 DASYLTELPGGRKPIRTFVVQESDANTMARMFAHIRARIDAGERAYVVCAHIDDDFNEDS 548

Query: 495 ----------------------------------------KKESNFRSVVERFNSLHEHF 514
                                                   +K      +++R ++L +  
Sbjct: 549 GSASASNFGRDFDSDESEAFEDVSQSVQSNQSEENNADSLRKLHTVNGILKRLSALPQFK 608

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + A + GR  D  K   M+ F  G  ++L+ATTVIEVG+DV  AS I+I +A+ FGLA
Sbjct: 609 GVTFAKLTGRDDDATKRETMERFARGDVQVLVATTVIEVGVDVPQASCIVIFDADRFGLA 668

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG   S   L+        +  RL V++N+ DG +IA++DL+ R  G++L
Sbjct: 669 QLHQLRGRVGRGGTNSWAFLVAQTEDGSLAQERLQVVENSLDGAVIAKKDLELRNVGDVL 728

Query: 635 GIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           G KQSG      I +      ++ +AR+DA   L +D  L          +L  Y     
Sbjct: 729 GDKQSGGRSSLKILRVVKDVKIIAMAREDALETLQKDTHL----------VLLPYLAGAV 778

Query: 694 FQFIRAG 700
             F R G
Sbjct: 779 LDFTRGG 785


>gi|255326571|ref|ZP_05367648.1| ATP-dependent DNA helicase RecG [Rothia mucilaginosa ATCC 25296]
 gi|255296311|gb|EET75651.1| ATP-dependent DNA helicase RecG [Rothia mucilaginosa ATCC 25296]
          Length = 1171

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 202/675 (29%), Positives = 323/675 (47%), Gaps = 85/675 (12%)

Query: 100  EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI--- 156
            ++ L FF   T        EG  +  +G++   +    + +PHY   +       +    
Sbjct: 498  QMKLSFFNAWTA--AREIREGETMMFSGRVGIYRGEYTLTNPHYALLSKDASGADVTDAA 555

Query: 157  ---EAVYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHN 211
                 VY  P  L  D     + + L ++P+  L + +   + + +  PS+   +  +H 
Sbjct: 556  TAPVPVYRAPVKLPTDRISGYMAQLLEKVPLKELEDPVPYTIRRARKVPSLEWTYRALHT 615

Query: 212  PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIP 270
            P     +           Y E    Q AL  +       +  P   VE  +A ++L+ +P
Sbjct: 616  PDSEDTWRAAQAQMR---YREAFVLQSALARLHSVRAAHLTQPRPAVESGLADRLLQVLP 672

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T+ Q+    +I  D+S ++ M R+LQGDVGSGKT+VAL AM    +AGGQ+ ++AP 
Sbjct: 673  YELTEGQQKVGAEIAADLSSESPMNRLLQGDVGSGKTVVALRAMLQVADAGGQSAMLAPT 732

Query: 331  GILAQQHYEFIKKYT------------------------QNTQIIVEIITGNMPQAHRRK 366
             +LA+QH   +                            +  ++ V ++T +M    +RK
Sbjct: 733  EVLAEQHLRSVLDILGDMAAPEDSDADDSAEGIPSGSGEEPDRVRVRLLTASMGTRAKRK 792

Query: 367  ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAPHVLL 425
             L+ +A G A I+IGTHAL  D + ++ L LV+VDEQHRFGV+QR  L       PH L+
Sbjct: 793  VLQELADGTAQIVIGTHALLSDEVSFHDLGLVVVDEQHRFGVEQRDGLRGTDGALPHRLV 852

Query: 426  MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSE 481
            MTATPIPRT+ +T  GD+D+S +   PAGR+ I T ++P+         +  R +  +  
Sbjct: 853  MTATPIPRTVAMTVFGDLDVSVLDTLPAGRQKISTHVVPLAEKPAWASRLWRRAREEIDA 912

Query: 482  GKKAYWICPQIEEKKE----------------------------------SNFRSVVERF 507
            G + Y + P+I E  +                                  S+ +  +   
Sbjct: 913  GHQVYVVVPKIGEDGDSLEEGAAFFGASSLNGAGAGNSAQGYFGQSGSASSDGKVQLTSV 972

Query: 508  NSLHEHFTS-------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             S++ + ++        I  +HGRM   +K SVM +F+ G   LLI+TTVIEVG++V +A
Sbjct: 973  ASMYSYLSAEDALVGVRIGTLHGRMDPAEKTSVMTAFERGEIDLLISTTVIEVGVNVPNA 1032

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
            +++II +A+ FG++ LHQLRGRVGRG    +C+L+        S  RL  + +T DGF +
Sbjct: 1033 TLMIIMDADRFGISGLHQLRGRVGRGGYAGTCLLVTRQEEGGVSRERLDAVASTTDGFEL 1092

Query: 621  AEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
            +  DL QR+EG+ILG  QSG        +      ++E AR+DA+ ++ +DP L      
Sbjct: 1093 SRIDLAQRREGDILGAAQSGSKSTLRFLRALADADIIERAREDARSVVEKDPTLAKHPSL 1152

Query: 680  SIRILLYLYQYNEAF 694
            +  I   L    EAF
Sbjct: 1153 ARTIDRALDADREAF 1167



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL--QKRRPYKIL 93
            +     ++L Y P  ++ R      +E+ E + VTI   +   S+  +  ++ +  ++ 
Sbjct: 292 LDLHTVGEMLEYFPRKYLPRGELSSFAELVEGQDVTIIARVVHVSTRTMAARRGKITEVT 351

Query: 94  LND 96
           + D
Sbjct: 352 ITD 354


>gi|289705870|ref|ZP_06502250.1| putative ATP-dependent DNA helicase RecG [Micrococcus luteus SK58]
 gi|289557413|gb|EFD50724.1| putative ATP-dependent DNA helicase RecG [Micrococcus luteus SK58]
          Length = 730

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 207/736 (28%), Positives = 347/736 (47%), Gaps = 56/736 (7%)

Query: 11  APLSTFR---GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           AP++       +G      L K +       T   DLL + P  +I+R     I+ +  +
Sbjct: 5   APVTDLPLSEVLGGTLPARLEKEL-----GLTTVGDLLDHVPRRWIERGELTPIAALPYD 59

Query: 68  RIVTITGYISQHSSFQLQKRRPYKI--LLNDGT------GEITLLFFYRKTEMLKNVFFE 119
             VT+   +   ++ ++  R  + +   + D +        +++ FF       +     
Sbjct: 60  AEVTVVAVVESVATRRMHSRPGFIVDVTVADPSVAGVPGASLSMAFFNGHDA--RRRLAP 117

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP---LIEAVYSLPTGLSVDLFKKIIV 176
           G      G+  + + RI + +P +   +              +Y     L     +  +V
Sbjct: 118 GMTAMFQGRTTEYRGRITLNNPDFALLDDDVAPGEVDVRPVPLYRATGKLPSWTVRSAVV 177

Query: 177 EALSRLPV--LPEWIEKDLLQKKSFPSI--------AEAFNIIHNPRKAKDFEWTSPARE 226
             L  + +  +PE + + +  + +            A+A+  +H P    D   T PA+ 
Sbjct: 178 RVLETVDLGRIPELLTERIRAEAAAALDLDAPLPGTAQAYRDLHAPH---DVAATGPAQT 234

Query: 227 RLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            LA  E L  Q AL   R ++            G + + +   +PF  T  Q +  + + 
Sbjct: 235 ALALREALLVQAALAWRRDRERAVPAVPRPPRPGGLLEALDARLPFVLTPGQVAVGEQLS 294

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK-- 343
            ++++   M R+LQGDVG+GKTLVAL AM   V+AGGQA ++AP  +LA QH   + +  
Sbjct: 295 AELARDAPMSRLLQGDVGAGKTLVALRAMLQVVDAGGQAALVAPTEVLAAQHNRALLRLM 354

Query: 344 ----------YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
                             V ++TG++  A RR+AL  +A G+A I +GTHAL  + + + 
Sbjct: 355 GPLAEAGTLGAGDGPATRVALVTGSLKTAARREALLALASGEAGIAVGTHALLSEKVGFA 414

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +L L +VDEQHRFGV QR  L +     H+L+M+ATPIPR++ +T  GD+D+S +   P+
Sbjct: 415 ELALAVVDEQHRFGVDQREALRRANPGTHLLVMSATPIPRSVAMTVFGDLDLSVLEGLPS 474

Query: 454 GRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE---- 505
           GR+P+ T +  +      I  V E +   ++ G +A+ +CP+I+        + VE    
Sbjct: 475 GRQPVTTHVARMAHGPRVIGRVWELIAEHVAAGHQAFVVCPRIDPDDADPGHANVEEMTP 534

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
           R   L       I  +HGRM   ++++ M +F  G   +L+ATTVIEVG+DV +A+++ I
Sbjct: 535 RLRGLPALAGLRIDAVHGRMDQAEQDAAMQAFARGATDVLVATTVIEVGVDVPNATVMAI 594

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            +A+ FGL+ LHQLRGRVGRG   + C+L    P    S  RL VL   +DG  IA+EDL
Sbjct: 595 LDADDFGLSTLHQLRGRVGRGPGAAVCLLATRLPDGHPSLRRLEVLAQEQDGMRIAQEDL 654

Query: 626 KQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
            QR  G++LG  QSG+              L+ +A      ++   P L++    +  + 
Sbjct: 655 AQRGVGDVLGAAQSGLASGLHHVDVIADAPLIAVAADAVAQVMAAGPGLSAHPALAAEVA 714

Query: 685 LYLYQYNEAFQFIRAG 700
            +  ++  A  ++  G
Sbjct: 715 RWEAEHLTAADYLEKG 730


>gi|283457869|ref|YP_003362469.1| RecG-like helicase [Rothia mucilaginosa DY-18]
 gi|283133884|dbj|BAI64649.1| RecG-like helicase [Rothia mucilaginosa DY-18]
          Length = 1215

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 203/683 (29%), Positives = 325/683 (47%), Gaps = 93/683 (13%)

Query: 100  EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI--- 156
            ++ L FF   T        EG  +  +G++   +    + +PHY   +       +    
Sbjct: 534  QMKLSFFNAWTA--AREIREGETMMFSGRVGIYRGEYTLTNPHYALLSKDASGADVTDAA 591

Query: 157  ---EAVYSLPTGLSVDLFKKIIVEALSRLPV--LPEWIEKDLLQKKSFPSIAEAFNIIHN 211
                 VY  P  LS D     + + L ++P+  L + +   + + +  PS+   +  +H 
Sbjct: 592  TAPVPVYRAPVKLSTDRISGYMAQLLEKVPLKELEDPVPYTIRRARKVPSLEWTYRALHT 651

Query: 212  PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIP 270
            P     +           Y E    Q AL  +       +  P   VEG +A ++L+ +P
Sbjct: 652  PDSEDTWRAAQAQMR---YREAFVLQSALARLHSVRAAHLTQPRPAVEGGLADRLLQVLP 708

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T+ Q+    +I  D+S ++ M R+LQGDVGSGKT+VAL AM    +AGGQ+ ++AP 
Sbjct: 709  YELTEGQQKVGAEIAADLSSESPMNRLLQGDVGSGKTVVALRAMLQVADAGGQSAMLAPT 768

Query: 331  GILAQQHYEFIKKYT----------------------------QNTQIIVEIITGNMPQA 362
             +LA+QH   +                                +  ++ V ++T +M   
Sbjct: 769  EVLAEQHLRSVLDILGDMAAPEDSDADDSAADSAEGIPAGSGAEPGRVRVRLLTASMGTR 828

Query: 363  HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-ATAP 421
             +RK L+ +A G A I+IGTHAL  D + ++ L LV+VDEQHRFGV+QR  L       P
Sbjct: 829  AKRKVLQELADGTAQIVIGTHALLSDEVSFHDLGLVVVDEQHRFGVEQRDSLRGTGGALP 888

Query: 422  HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKV 477
            H L+MTATPIPRT+ +T  GD+D+S +   PAGR+ I T ++P+         +  R + 
Sbjct: 889  HRLVMTATPIPRTVAMTVFGDLDVSVLDTLPAGRQKISTHVVPLAEKPAWASRLWRRARE 948

Query: 478  VLSEGKKAYWICPQIEEKKE--------------------------------------SN 499
             +  G + Y + P+I E  +                                      S+
Sbjct: 949  EIDAGHQVYVVVPKIGEDGDSLEEGAAFFGASSLNGAGTGAGAGNSAQGYFGQGGSTSSD 1008

Query: 500  FRSVVERFNSLHEHFTS-------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
             +  +    S++ + ++        I  +HGRM   +K +VM +F+ G   LLI+TTVIE
Sbjct: 1009 GKVQLTSVASMYSYLSAEDALVGVRIGTLHGRMDPAEKTAVMTAFERGEIDLLISTTVIE 1068

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            VG++V +A+++II +A+ FG++ LHQLRGRVGRG    +C+L+        S  RL  + 
Sbjct: 1069 VGVNVPNATLMIIMDADRFGISGLHQLRGRVGRGGYAGTCLLVTRQEEGGVSRERLDAVA 1128

Query: 613  NTEDGFLIAEEDLKQRKEGEILGIKQSGMPK-FLIAQPELHDSLLEIARKDAKHILTQDP 671
            +T DGF ++  DL QR+EG+ILG  QSG        +      ++E AR+DA+ ++ +DP
Sbjct: 1129 STTDGFELSRIDLAQRREGDILGAAQSGSKSTLRFLRALADADIIERAREDARSVVEKDP 1188

Query: 672  DLTSVRGQSIRILLYLYQYNEAF 694
             L      +  I   L    EAF
Sbjct: 1189 TLAKHPSLARTIDRALDADREAF 1211



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL--QKRRPYKIL 93
            +     ++L Y P  ++ R      +E+ E + VTI   +   S+  +  ++ +  ++ 
Sbjct: 344 LDLHTVGEMLEYFPRKYLPRGELSSFAELVEGQDVTIIARVVHVSTRTMAARRGKITEVT 403

Query: 94  LND 96
           + D
Sbjct: 404 ITD 406


>gi|254739526|ref|ZP_05197223.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Kruger B]
          Length = 432

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 172/420 (40%), Positives = 271/420 (64%), Gaps = 3/420 (0%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             F  T +Q   + +I++DM+   RM R+LQGDVGSGKT+VA I + AA  A  Q  +M 
Sbjct: 3   FRFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAHYQGALMV 62

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QHY+ + +   +  + VE++T ++    RR+ L ++  G+  I++GTHAL QD
Sbjct: 63  PTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVRRREILAKLEQGEIDILVGTHALIQD 122

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            + +++L LVI DEQHRFGV QR  L +K  +P VL MTATPIPRTL +T+ G++D+S I
Sbjct: 123 EVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAFGEMDVSII 182

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            E PAGRK I+T     + +D V+  ++  +++G++AY ICP IEE ++ + ++ ++  +
Sbjct: 183 DEMPAGRKVIETYWAKHDMLDRVLGFVEKEINKGRQAYVICPLIEESEKLDVQNAIDLHS 242

Query: 509 SLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            L  H+     + ++HGR+S  +KE +M  F     ++L++TTV+EVG++V +A++++I 
Sbjct: 243 MLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIY 302

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           +AE FGL+QLHQLRGRVGRG E S C+L+  P  S+    R+ ++  T DGF+++E+DL+
Sbjct: 303 DAERFGLSQLHQLRGRVGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLE 361

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  G+  G KQSG+P+F +A        LE AR+DA  ++  +    + +  S+R  L 
Sbjct: 362 LRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAALLVDSEAFWHNDQYASLRTYLD 421


>gi|149011439|ref|ZP_01832686.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764429|gb|EDK71360.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP19-BS75]
          Length = 455

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 189/456 (41%), Positives = 296/456 (64%), Gaps = 6/456 (1%)

Query: 238 IALLLMRKQFKKE-IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           + L +++ + + +  G+ +N   +    +  ++PF+ T++QE ++++IL DM   + M R
Sbjct: 1   MQLQMLKSENRVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNR 60

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +LQGDVGSGKT+VA +AM AAV AG QA +M P  ILA+QH+E ++       + + ++T
Sbjct: 61  LLQGDVGSGKTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLF--PNLKLALLT 118

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           G++  A +R+ LE IA G+A +IIGTHAL QD ++Y +L L+I+DEQHRFGV QR  L +
Sbjct: 119 GSLKAAEKREVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILRE 178

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K   P VL+MTATPIPRTL +T+ GD+D+S I + PAGRKPI T  I   ++ +V+  L+
Sbjct: 179 KGDNPDVLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLE 238

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVM 534
             + +G +AY I P IEE +  + ++ +     L  HF     +A++HGRM   +K+ +M
Sbjct: 239 GEIQKGSQAYVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIM 298

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK     +L++TTVIEVG++V +A+++II +A+ FGL+QLHQLRGRVGRG++ S  +L
Sbjct: 299 QDFKERKTDILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVL 358

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           + +P  + +   R+ ++  T +GF++AEEDLK R  GEI G +QSG+P+F +A       
Sbjct: 359 VANPK-TDSGKDRMRIMTETTNGFILAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFP 417

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
           +LE ARK A +I + +        + I + L   ++
Sbjct: 418 ILEEARKVASYISSIEAWQEDPEWRMIALHLEKKEH 453


>gi|257413332|ref|ZP_05591609.1| ATP-dependent DNA helicase RecG [Roseburia intestinalis L1-82]
 gi|257203890|gb|EEV02175.1| ATP-dependent DNA helicase RecG [Roseburia intestinalis L1-82]
          Length = 550

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 165/540 (30%), Positives = 259/540 (47%), Gaps = 16/540 (2%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
           +PL   +GVG K      KI            D+L ++P ++I       + E+ +    
Sbjct: 5   SPLREIKGVGAKTEELFHKI------GVYTVGDILLHYPRTYIQYPQAKHVDEVLDGEQA 58

Query: 71  TITGYISQHSSFQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            + G I++    +  +     +      G  + L+++  +   +KN    G      GK+
Sbjct: 59  AVLGRITRTPVVRKVRTMQITVTTISEMGASLELVWY--RMPYMKNNLKVGSTYIFYGKV 116

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            K   R++M                +   VY+L  GLS +L  K +  AL    +  +++
Sbjct: 117 NKKNGRLVMEQAAMFTEEQYASMEQVFLPVYTLTNGLSNNLVTKTVRAALGDEHLFMDYL 176

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              + +K        A   IH P   +D E    AR RL +DE     +++   +++  K
Sbjct: 177 PHAIREKYGLCEYNYAIRQIHFP---EDMETLITARRRLVFDEFFLFILSMQYQKEKHVK 233

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           E    +  E     +++  +P+  T +Q+ A+ D+ +DM  +  M R++QGDVGSGKT+V
Sbjct: 234 EKNEFVFAEDDFTDELIERLPYELTNAQKKALADVKRDMRSETVMQRLIQGDVGSGKTIV 293

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRKA 367
           A +AMA     G Q+ IMAP  +LA+QHYE  +   +     I + ++TG+M    +R+A
Sbjct: 294 AFLAMADTAHNGYQSAIMAPTEVLARQHYESYQSMCEQFGLHIPIVLLTGSMTAKQKRRA 353

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            E +      +IIGTHAL Q+   Y  L LVI DEQHRFGV+QR     K T PHVL+M+
Sbjct: 354 YEALEVYSNAMIIGTHALIQEKAIYQNLALVITDEQHRFGVRQRETFAGKGTEPHVLVMS 413

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +   GD+DIS I E PA R PIK  ++      +    ++  + EG +AY 
Sbjct: 414 ATPIPRTLAIIIYGDLDISVIDEVPAKRLPIKNCVVDQRYRPKAYAFIEHEIREGHQAYV 473

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ICP +EE +     +V +    L E       I ++HG+M    K  +MD F     + L
Sbjct: 474 ICPLVEESENMEAENVTDYAKRLREELPEDIVIGVLHGQMKAEQKNKIMDQFVKMRSRYL 533


>gi|309806866|ref|ZP_07700853.1| putative ATP-dependent DNA helicase RecG [Lactobacillus iners
           LactinV 03V1-b]
 gi|308166732|gb|EFO68924.1| putative ATP-dependent DNA helicase RecG [Lactobacillus iners
           LactinV 03V1-b]
          Length = 489

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 172/495 (34%), Positives = 284/495 (57%), Gaps = 9/495 (1%)

Query: 200 PSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-ALLLMRKQFKKEIGIPINVE 258
             +      +H P   KD +    A+    + E    Q+    L+    +K  GI    +
Sbjct: 2   LDVKSMIIQMHQP---KDLQQVKIAQRTAIFLEFFVFQLQLSQLLYANDQKNNGIAKKYD 58

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
                ++  +I F  +  Q  AI +IL D++   RM R+LQGDVGSGKT+VA+ A+ A +
Sbjct: 59  SSAINELKESINFQLSDDQIQAINEILADLASAKRMNRLLQGDVGSGKTIVAVFAIFACI 118

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            AG Q  +M P  ILAQQH   I    +   +   ++T +     +++    +  G  ++
Sbjct: 119 TAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSSTKLNEKKEIYRELKDGIINL 178

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           +IGTHA+ QD + + KL LVI+DEQHRFGV QR +L  K     +L M+ATPIPRTL L+
Sbjct: 179 VIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGKMVDILAMSATPIPRTLALS 238

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
             G+  +S+I + P GRK + +  I  + + +++  +   L +G + Y + P I E  + 
Sbjct: 239 VYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQLEQGFQIYVVAPLIAESDKL 298

Query: 499 NFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           + ++    +  +  +F +  +A++HG+M+   K  +MD+F +G+ K+LI T+VIEVG+DV
Sbjct: 299 HLKNAETLYKKMALYFGSDRVALLHGKMASSQKSDIMDAFIHGSIKILITTSVIEVGVDV 358

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            +A+++II NA+HFGL+QLHQLRGR+GRG   S CI +  P  + ++  RL ++   +DG
Sbjct: 359 ANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYCIFVSDPK-TDSAKKRLKIISTCDDG 417

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           F +A EDLK R EG+I G  QSG+P+F +     + ++   A+K++K ++ Q+P+L    
Sbjct: 418 FALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINNYNIFTTAQKESKILVHQNPELVGEE 477

Query: 678 GQSIRILLYLYQYNE 692
              +++   L +Y++
Sbjct: 478 YDFLKL---LMEYDD 489


>gi|3785974|gb|AAC67321.1| putative ATP-dependent DNA helicase RECG [Arabidopsis thaliana]
          Length = 845

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 209/735 (28%), Positives = 341/735 (46%), Gaps = 113/735 (15%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   + +  G+ K++S  L       +        LL + P ++ D        +I + +
Sbjct: 133 LATSIDSMPGLSKRHSNQL------DSCGFHTMKKLLHHFPRTYADLQNAQ--VDIEDGQ 184

Query: 69  IVTITGYISQHSSFQLQKR-RPYKILLN------------------DGTGE---ITLLFF 106
            +   G +      +        +++++                  D  G+   + L  F
Sbjct: 185 YLIFVGKVLSSKGVRASSSFSFLEVIVSCEVSGRDRTPEDLSHNAEDKAGKSIFLHLKKF 244

Query: 107 YRKTEM--------LKNVFFEGRKITVTGKIKKLK--NRIIMVHPHYIFHNSQDVNFPLI 156
           +R T          ++     G  + ++GK+K L+  +   M   +      ++ +    
Sbjct: 245 FRGTRFTWQPFLNSIQEKHKVGDLVCISGKVKSLRAEDHFEMREYNIDVLKDEEESSHRA 304

Query: 157 E----AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP 212
           +     +Y    GL+      +I  AL  LP   + I K++ +    PS+ +A+  IH P
Sbjct: 305 QGRPYPIYPSKGGLNPKFLSDVISRALRVLPANMDPIPKEITKVFGLPSLNDAYVGIHEP 364

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLM----------------RKQFKKEIGIPIN 256
           +   + +     R+RL +DE    Q+A L                  + +      + I 
Sbjct: 365 KTLDEADLA---RKRLIFDEFFYLQLARLYQMLQSLGTKIEKDVLLEKFRKPVLNSVYIE 421

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
               + +  L+ +P+S T SQ SA+ +I+ D+ +   M R+LQGDVG GKT+VA +A   
Sbjct: 422 EWSTLTKSFLKALPYSLTPSQLSAVSEIIWDLKRPVPMNRLLQGDVGCGKTVVAFLACME 481

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            + +G QA  MAP  +LA QHYE  +   +N +                     +  G  
Sbjct: 482 VIGSGYQAAFMAPTELLAIQHYEQCRDLLENME-------------------GDLQSGAI 522

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR-----------------------LK 413
             IIGTH+L  + I+Y  L + +VDEQ RFGV QR                         
Sbjct: 523 SFIIGTHSLIAEKIEYSALRIAVVDEQQRFGVIQRGKFNSKLYGTSMISKSGSSDSDDTS 582

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEV 471
               + APHVL M+ATPIPR+L L   GDI +++IT  P GR P++T I   N   I EV
Sbjct: 583 KADLSMAPHVLAMSATPIPRSLALALYGDISLTQITGMPLGRIPVETHIFEGNETGIKEV 642

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFT-SSIAIIHGRMSDID 529
              +   L  G + Y + P I++ ++    R+       + + F   +  ++HGRM   D
Sbjct: 643 YSMMLEDLKSGGRVYVVYPVIDQSEQLPQLRAASAELEIVTKKFPKYNCGLLHGRMKSDD 702

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           KE  ++ F++G  ++L++T VIE+G+DV DAS++++ NAE FG+AQLHQLRGRVGRG   
Sbjct: 703 KEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGTRK 762

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQ 648
           S C+L+     S NS  RL++L  + DGF +A  DL  R  G++LG KQSG +P+F +A+
Sbjct: 763 SKCLLVGS---STNSLKRLNMLGKSSDGFYLANIDLLLRGPGDLLGKKQSGHLPEFPVAR 819

Query: 649 PELHDSLLEIARKDA 663
            E+  ++L+ A   A
Sbjct: 820 LEIDGNMLQEAHIAA 834


>gi|239631975|ref|ZP_04675006.1| ATP-dependent DNA helicase RecG [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526440|gb|EEQ65441.1| ATP-dependent DNA helicase RecG [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 453

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 172/435 (39%), Positives = 274/435 (62%), Gaps = 3/435 (0%)

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           + I  + +  + ++  +PF+ T +Q+  + +I  DM + N M R+LQGDVGSGKT+VA I
Sbjct: 9   LAIPYDNQALRALIATLPFALTNAQKRVVNEICADMRRPNHMNRLLQGDVGSGKTIVAAI 68

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            + AAV AG QA +M P  +LA+QH+  + K  ++  + + ++TG+     RR+ L  + 
Sbjct: 69  VLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTSTKKRRELLSELR 128

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            G+ ++IIGTHAL Q  + ++ L LV++DEQHRFGV QR  L +K   P +L MTATPIP
Sbjct: 129 DGRLNLIIGTHALIQKGVDFHALGLVVIDEQHRFGVNQRKILQEKGQKPDLLSMTATPIP 188

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL +T+ G++D+S I E PAGRKPI T  +  N+ID+V   ++  +  G + + I P I
Sbjct: 189 RTLAITAYGEMDVSTIDELPAGRKPIATTWLRKNQIDQVYRIIREQVQSGSQVFAITPLI 248

Query: 493 EEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            E ++ + ++  + F  + +       +A++HG+M   +K+ +M +F +G   +L++TTV
Sbjct: 249 AESEKIDLQNAEQLFVDMQKAVGNLGPVALLHGQMKPDEKDQIMRAFSDGKIAVLVSTTV 308

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG+DV +A+++ I +A+ FGL+QLHQLRGRVGRG++ + C+L+  P  ++    R+ +
Sbjct: 309 VEVGVDVPNATVMAIFDADRFGLSQLHQLRGRVGRGQKAAQCLLIADPK-NEQGIARMEI 367

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           +  T DGFL+A++DL+ R  G+I G KQSG+P+F +A P      LE A+K    I   D
Sbjct: 368 MTKTNDGFLLAQKDLEMRGSGDIFGDKQSGLPEFKVADPVGDFPTLEAAQKIVAQIFKTD 427

Query: 671 PDLTSVRGQSIRILL 685
           P L     Q +   L
Sbjct: 428 PHLLQSDHQPLAAYL 442


>gi|260578990|ref|ZP_05846892.1| ATP-dependent DNA helicase [Corynebacterium jeikeium ATCC 43734]
 gi|258602855|gb|EEW16130.1| ATP-dependent DNA helicase [Corynebacterium jeikeium ATCC 43734]
          Length = 721

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 218/719 (30%), Positives = 338/719 (47%), Gaps = 64/719 (8%)

Query: 23  YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF 82
            +  L+              D +   P ++        + E+      T  G I      
Sbjct: 18  RAKRLA-----DKPGIKTIADAVLNFPVTYARLGSPQGLDELRVGEKYTCAGEILSVGEK 72

Query: 83  ----QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
                   R+       DG        F       +     G  + + GK+ +   +  +
Sbjct: 73  DNHSGRGPRKFLAFTFTDGVRTFRSALFG-NVAYHRKRIKRGSMMLLHGKLSEFNGQWEL 131

Query: 139 VHPHYI-FHNSQDVNFPLIEAV------------------------YSLPTGLSVDLFKK 173
            +P Y+    + D  F +   +                        Y    G S      
Sbjct: 132 KNPSYVSILPALDAEFGMFGPLKTIVDVMGSETAAQELLAKPWMAGYKRRPGTSTAEMLG 191

Query: 174 IIVEALSRLPVLPEWIEKDLL-----------QKKSFPSIAEAFNIIHNPRKAKDFEWTS 222
           ++   L  +    E++                + +   S A+A   IH P +A       
Sbjct: 192 VMDHVLRVMDDPGEFLPLPRRNPGAPAWPTDEKGRPLISFADALRHIHQPSEA----GPE 247

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
           PAR RL ++E L  Q+ + L R    K  G+ +   G+  +K++  +PF  +  Q+ A++
Sbjct: 248 PARRRLKFNEALELQLVMALRRNDATKRTGMALAP-GENVEKLIAGLPFDLSAGQKMALE 306

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           DI   +        +L G+VGSGKT+VALI+M  AV++G Q   +AP  ILA QH   + 
Sbjct: 307 DIGSRLGGTTPANLLLHGEVGSGKTMVALISMLWAVDSGYQCAFVAPTEILAVQHARSLV 366

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           K  +NT + V ++ G+  QA +++ L  +  GQ  I++GTHA+ QDS+++Y+L +V+VDE
Sbjct: 367 KMLENTDVRVSVLVGSQKQADKQRTLLDLVSGQTDIVVGTHAVIQDSVEFYRLGMVVVDE 426

Query: 403 QHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           QHRFGVQQR KL + A     PH+++MTATPIPRT+ +T  GD+    +  KP GR  I+
Sbjct: 427 QHRFGVQQRNKLRESAPVDATPHMMVMTATPIPRTVGMTMFGDLTPITLVGKPGGRGDIE 486

Query: 460 TVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           TV++P ++   +    ER+   +  G +AY + P+IE    S      ER  +  E    
Sbjct: 487 TVVVPADKYRWVRRAWERMGEEIKAGGQAYVVAPRIE--GHSGVEQWCERIAT-EELPGC 543

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A++HG+M   DK+ VM  F  G   +L+ATTVIEVG+DV +AS+++I  AE+FG +QL
Sbjct: 544 RVAMLHGKMDPADKDQVMQDFAAGKIDVLVATTVIEVGVDVPNASMMMILEAENFGFSQL 603

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGR+GRG   S C+L         S+ RL V+  + DGF +AEEDLK R EG+ILG 
Sbjct: 604 HQLRGRIGRGRRDSLCLLHTTAAPDSPSFHRLQVVAQSNDGFRLAEEDLKMRTEGDILGQ 663

Query: 637 KQSGMPKFL--IAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            QSG       +        ++E AR  A+ ++  D  L   R   + I +    Y E 
Sbjct: 664 DQSGRSARRASLLDLSTDGEIIESARDYAEALVAYDEQLA--RSLVVDIEIDDQDYIEK 720


>gi|68536289|ref|YP_250994.1| ATP-dependent DNA helicase [Corynebacterium jeikeium K411]
 gi|68263888|emb|CAI37376.1| ATP-dependent DNA helicase [Corynebacterium jeikeium K411]
          Length = 721

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 214/700 (30%), Positives = 332/700 (47%), Gaps = 62/700 (8%)

Query: 23  YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF 82
            +  L+              D +   P ++        + E+      T  G I      
Sbjct: 18  RAKRLA-----DKPGIKTIADAVLNFPVTYARLGSPQGLDELRVGEKYTCAGEILSVGEK 72

Query: 83  ----QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
                   R+       DG        F       +     G  + + GK+ +   +  +
Sbjct: 73  DNHSGRGPRKFLAFTFTDGVRTFRSALFG-NVAYHRKRIKRGSMMLLHGKLSEFNGQWEL 131

Query: 139 VHPHYI-FHNSQDVNFPLIEAV------------------------YSLPTGLSVDLFKK 173
            +P Y+    + D  F +   +                        Y    G S      
Sbjct: 132 KNPSYVSILPALDAEFGMFGPLKTIVDVMGSETAAQELLAKPWMAGYKRRPGTSTAEMLG 191

Query: 174 IIVEALSRLPVLPEWIEKDLL-----------QKKSFPSIAEAFNIIHNPRKAKDFEWTS 222
           ++   L  +    E++                + +   S A+A   IH P +A       
Sbjct: 192 VMDHVLRVMDDPGEFLPLPRRNPGAPAWPTDEKGRPLISFADALRHIHQPSEA----GPE 247

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
           PAR RL ++E L  Q+ + L R    K  G+ +   G+  +K++  +PF  +  Q+ A++
Sbjct: 248 PARRRLKFNEALELQLVMALRRNDATKRTGMALAP-GENVEKLIAGLPFDLSAGQKMALE 306

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           DI   +        +L G+VGSGKT+VALI+M  AV++G Q   +AP  ILA QH   + 
Sbjct: 307 DIGSRLGGTTPANLLLHGEVGSGKTMVALISMLWAVDSGYQCAFVAPTEILAVQHARSLV 366

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           K  +NT + V ++ G+  QA +++ L  +  GQ  I++GTHA+ QDS+++Y+L +V+VDE
Sbjct: 367 KMLENTNVRVSVLVGSQKQADKQRTLLDLVSGQTDIVVGTHAVIQDSVEFYRLGMVVVDE 426

Query: 403 QHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           QHRFGVQQR KL + A     PH+++MTATPIPRT+ +T  GD+    +  KP GR  I+
Sbjct: 427 QHRFGVQQRNKLRESAPVDATPHMMVMTATPIPRTVGMTMFGDLTPITLVGKPGGRGAIE 486

Query: 460 TVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           TV++P ++   +    ER+   +  G +AY + P+IE    S      ER  +  E    
Sbjct: 487 TVVVPADKHRWVRRAWERMGEEIKAGGQAYVVAPRIE--GHSGVEQWCERIAT-EELPGC 543

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A++HG+M   DK+ VM  F  G   +L+ATTVIEVG+DV +AS+++I  AE+FG +QL
Sbjct: 544 RVAMLHGKMDPADKDQVMQDFAAGKIDVLVATTVIEVGVDVPNASMMMILEAENFGFSQL 603

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGR+GRG   S C+L         S+ RL V+  + DGF +AEEDLK R EG+ILG 
Sbjct: 604 HQLRGRIGRGRRDSLCLLHTTAAPDSPSFHRLQVVAQSNDGFRLAEEDLKMRTEGDILGQ 663

Query: 637 KQSGMPKFL--IAQPELHDSLLEIARKDAKHILTQDPDLT 674
            QSG       +        ++E AR  A+ ++  D  L 
Sbjct: 664 DQSGRSARRASLLDLSTDGEIIESARDYAEALVAYDEQLA 703


>gi|298253296|ref|ZP_06977088.1| RecG-like helicase [Gardnerella vaginalis 5-1]
 gi|297532691|gb|EFH71577.1| RecG-like helicase [Gardnerella vaginalis 5-1]
          Length = 750

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 218/740 (29%), Positives = 350/740 (47%), Gaps = 116/740 (15%)

Query: 57  YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI---LLNDGTGEITLLFF---YRKT 110
               + +I     V     +   +   +  RR ++I   +L D      L++F    +  
Sbjct: 2   RIANLKDIKIGEEVAFYAQVQSINVVPMNARRGFRIEINVLQDMQAVAQLIYFSKNRQYA 61

Query: 111 EMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE------------- 157
           + L      G  + V G       ++   HP  +  ++ + +  L +             
Sbjct: 62  QWLSAKMHVGEMVVVGGTSSAFNGKLQFTHPQILTVSAVEESDSLHQSRDTVRSVEDGLA 121

Query: 158 ------AVYSLPTGLSVDLFKKIIVEALSRLP--------------------VLPEWIEK 191
                  VY   + +S +   + I+  LS L                      +P+   +
Sbjct: 122 RMSAPMPVYHANSRISSEHIHETILSILSALSKDSEDSAASKNSAACTSEFLQIPDITPE 181

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
            +L+K++  + A A   IHNP+   +F     A + L Y+E    Q+A+L  R+  K   
Sbjct: 182 SVLKKRNLMTRASAIYSIHNPQSVDEF---YKAVDSLRYEEAFISQVAVLRSREDSKDNQ 238

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    I  + + ++PF  T  Q+  I +I++DM + + M R+LQG+VGSGKT+VAL
Sbjct: 239 AKSCN-NSLIRNEFVESLPFELTAGQKDVIDEIVRDMREHHPMRRLLQGEVGSGKTVVAL 297

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY--TQNTQIIVEIITGNMPQAHRRKALE 369
            AM  AV +G QAV++AP  +LA QH E +++     N ++ V ++TG M  A RR+AL 
Sbjct: 298 AAMLEAVGSGYQAVLVAPTQVLASQHAENLRQMIARANLKVPVIVVTGGMRLADRRRALA 357

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------- 419
            +A G+  +I+ THA F  + +   L LVI+DEQHRFGV+QR  L +K +          
Sbjct: 358 SVASGEPSLIVATHAAFSSTFKPINLALVIIDEQHRFGVEQRDVLLRKMSVDSHNSAEKS 417

Query: 420 -APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI---NRIDEVIERL 475
             PH+L+MTATPIPR+  +T  GD+D S +TE P GRKPI+T ++     N +  +   +
Sbjct: 418 FTPHLLVMTATPIPRSAAMTWFGDLDASYLTELPGGRKPIRTFVVQESDANTMARMFAHI 477

Query: 476 KVVLSEGKKAYWICPQIEE----------------------------------------- 494
           +  +  G++AY +C  I++                                         
Sbjct: 478 RARIDAGERAYVVCAHIDDDFNEDSGRDSGSASVSNFGRDFDSDESEGFEDVSQSVQSNQ 537

Query: 495 ---------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
                    +K      +++R ++L +    + A + GR  D  K   M+ F  G  ++L
Sbjct: 538 SEENNADSLRKLHTVNGILKRLSALPQFKGVTFAKLTGRDDDATKRETMERFARGDVQVL 597

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +ATTVIEVG+DV  AS I+I +A+ FGLAQLHQLRGRVGRG   S   L+        + 
Sbjct: 598 VATTVIEVGVDVPQASCIVIFDADRFGLAQLHQLRGRVGRGGTNSWAFLVAQTEDGSLAQ 657

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAK 664
            RL V++N+ DG +IA++DL+ R  G++LG KQSG      I +      ++ +AR+DA 
Sbjct: 658 ERLQVVENSLDGAVIAKKDLELRNVGDVLGDKQSGGRSSLKILRVVKDAKIIAMAREDAL 717

Query: 665 HILTQDPDLTSVRGQSIRIL 684
             L +D  L S+   +  +L
Sbjct: 718 ETLQKDTHLVSLPYLAGAVL 737


>gi|153810839|ref|ZP_01963507.1| hypothetical protein RUMOBE_01223 [Ruminococcus obeum ATCC 29174]
 gi|149833235|gb|EDM88317.1| hypothetical protein RUMOBE_01223 [Ruminococcus obeum ATCC 29174]
          Length = 517

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 160/525 (30%), Positives = 280/525 (53%), Gaps = 16/525 (3%)

Query: 11  APLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIV 70
             L T +GVG K      K+            DLL Y+P ++        I+++ E  + 
Sbjct: 3   DSLRTLKGVGDKTEKLFFKL------GIYDTDDLLHYYPRNYDAFEAPVDIADLEEGTVK 56

Query: 71  TITGYISQHSSFQL-QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
            ++  +         + R+     +ND +G++++++F      L+ V     +    G+I
Sbjct: 57  AVSAAVCSGVYVTSAKGRQIITASINDSSGKLSVIWFN--MPYLRTVLKRDSQFVFRGRI 114

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            + ++ + M HP      +       ++ VY L  GLS     K+I + L  LP+  E++
Sbjct: 115 VRKQSHLEMEHPEVFTPAAYGEILHSLQPVYGLTGGLSNKTVTKMIHQLLKNLPMYSEFL 174

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            +++ ++     I  A   IH P   ++   +   R+RL +DE L   +++ +++++ ++
Sbjct: 175 PEEIRERYQLADINYALRTIHFPGNMEELLLS---RKRLVFDEFLLFILSVQMLKEKSEE 231

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   +    ++I+ N+P+S T +Q +   +I +DMS +  M R++QGDVGSGKT++
Sbjct: 232 TPNYFPINKTWTTEQIIENLPYSLTGAQLNTWHEIERDMSGQALMSRLVQGDVGSGKTII 291

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII--VEIITGNMPQAHRRKA 367
           A +AM  A E G QA +MAP  +LA+QHY+   +  +   +   V ++TG+     +R+ 
Sbjct: 292 AFLAMILACENGYQAALMAPTEVLARQHYDGFLRLQEEQGLNFHVVLLTGSNTAREKREI 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            + IA G+A IIIGTHAL Q+ ++Y+ L LV+ DEQHRFGV+QR  LT +   P++L+M+
Sbjct: 352 YQHIASGEAQIIIGTHALIQEKVEYHDLALVVTDEQHRFGVKQREALTTRGNPPNILVMS 411

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL +   GD+DIS I E PA R PIK  ++  +   +    ++  + EG++AY 
Sbjct: 412 ATPIPRTLAIILYGDLDISIIDELPAKRLPIKNCVVNTSYRPKAYAFIQRQVREGRQAYI 471

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDK 530
           ICP +EE +  +  +V++    L   F S  +++ +HG+M    K
Sbjct: 472 ICPMVEESEGLDAENVLDYTRKLKGIFPSDINVSFLHGKMKPKRK 516


>gi|308807965|ref|XP_003081293.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
 gi|116059755|emb|CAL55462.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
          Length = 1259

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 225/716 (31%), Positives = 351/716 (49%), Gaps = 71/716 (9%)

Query: 11   APLSTFRG-VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
             P+   +  V K     L           +    +L   P  + +     K   ++    
Sbjct: 520  TPIDVLKDKVPKSTMKALK------AEGVSTIEAVLRNCPRKYQEFSAWNK--SLAMGTQ 571

Query: 70   VTITGYISQHSSFQLQKRR--PYKILLN-----------------DGTGEITLLFFYRKT 110
            VT+TG +         + R  P  IL+                  D      +  +   +
Sbjct: 572  VTLTGTVRSMQVRDYMRGRSIPNTILVEVDLPESEITTSDDNPWGDNKPRCKVKVWDHIS 631

Query: 111  EMLKNVFFEGRKITVTGKIKKLKNRIIM------VHPHYIFHNSQDVNFPLIEAVYSLPT 164
            + ++     G +++V G +               V P        + +   I A Y+   
Sbjct: 632  KDMRAGMPIGARVSVRGTLGTGDRNCQFSIDGGRVAPIAEDAPILESDGAEIVATYAKRG 691

Query: 165  GLSVDLFKKIIVEALSRLPVLPEWIEKD-----------LLQKKSFPSIAEAFNIIHNPR 213
             +S   + + I    + + +  E +  D           LL +    S +EA   IH P 
Sbjct: 692  QMSNVEWHRAIS---ASMDIFVEKLPADPVEVSMGRDNPLLSELGLLSHSEAVKNIHRP- 747

Query: 214  KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI-----PINVEGKIAQKILRN 268
              K+ E  + ARERLA++ELL  Q+ALL  R + +             V   +  ++   
Sbjct: 748  --KNVEIVAQARERLAFEELLLLQVALLQERSRLQALPVSETTEGVCIVGTALVDELRTE 805

Query: 269  IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            +PF+ T+SQES++++IL DM+    MLR+LQGDVG GKT+VA +++ AAV AG Q   MA
Sbjct: 806  LPFALTRSQESSLEEILSDMAGPAPMLRLLQGDVGCGKTVVAAMSLLAAVGAGHQGAFMA 865

Query: 329  PIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P  +LA QH+  + +          V ++TG+   A R + LE ++ G+  II+GTHAL 
Sbjct: 866  PTEVLATQHHRVLTELLSQMRDPPKVVLLTGSTKTAERAQILEDLSSGKIGIIVGTHALI 925

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             + + +  L + +VDEQHRFGV+QR  L  +    PH+L M+ATPIPRTL +T  G++ +
Sbjct: 926  HEKVVFNSLGIAVVDEQHRFGVEQRAALLSKGKVPPHMLTMSATPIPRTLAMTKFGEMAL 985

Query: 446  SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---KESNFRS 502
            S I EKPAGR PI T +  ++  D   E ++  + +G +AY I   ++E    + S  + 
Sbjct: 986  SVIDEKPAGRLPIITKVCAVDEHDIAYEAMRDEVRQGAQAYIIVRLVQESGSSRMSEVKG 1045

Query: 503  VVERFNSL-HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              E +  L  ++      ++HG++   +K + ++ F  G  + L+AT+V+EVG+DV +AS
Sbjct: 1046 AEEEYARLVSKYPNVRFGLLHGQLGAEEKAAALEKFSAGETQALVATSVVEVGVDVPNAS 1105

Query: 562  IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN-------SYTRLSVLKNT 614
            IIIIE+A+ FGLA LHQLRGRVGRG   S C LL+ P + +N       +  RL VL+ +
Sbjct: 1106 IIIIEDADGFGLAALHQLRGRVGRGSRQSKCFLLHTPGVGENAESKEDRARDRLRVLEQS 1165

Query: 615  EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI-AQPELHDSLLEIARKDAKHILTQ 669
             +GF IAE DL+ R  GE+ G KQSG    L  A       LLE ARK A  ++++
Sbjct: 1166 NNGFRIAESDLQLRGAGELFGTKQSGQQVNLFHASMSTDLYLLEAARKAAAEMISR 1221


>gi|228982575|ref|ZP_04142834.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis Bt407]
 gi|228776758|gb|EEM25066.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis Bt407]
          Length = 604

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 192/595 (32%), Positives = 314/595 (52%), Gaps = 25/595 (4%)

Query: 86  KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK---LKNRIIMVHPH 142
           K     + + D    I  + F+     +   F         G++      +  + M +P 
Sbjct: 7   KPNAVILKVEDSKASIIYVTFFH-QSYIAQKFTINESYIFCGRVSVTYGYRKFVSMANP- 64

Query: 143 YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSI 202
            I +       P I  VYS   G+S D  K+ +  A S +    E++E  +++K      
Sbjct: 65  -ILYGPSSELNPGILPVYSKIKGMSDDYLKRCMNSAYSIVRS-DEYLENSIIKKFDMIYF 122

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG-KI 261
            +A   IH P+  ++       + R  +DEL    + LL    +  +    P  ++  ++
Sbjct: 123 RKALQYIHFPKTTEEINE---GKSRFLFDELFFFNLNLLQN--ENNQMKQSPFEIDKFEL 177

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           +++++  +PF  T+ Q +A++ I + M  K R+  ++QGDVG GKT+VA+ ++  AVE G
Sbjct: 178 SKQLMGELPFELTEGQRNALRMISKKMKNKERVNALIQGDVGCGKTMVAIFSLLMAVENG 237

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  +M P  +LA+QHYE I +   +  I V  ++G+M    R+K ++ I  G+  I++G
Sbjct: 238 YQGALMCPTSVLAKQHYEEITERFSSFGIKVAYLSGDMKVRERKKVVKAIKEGEVDIVVG 297

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSL 440
           THA+    +++  L L IVDE+HRFGV+QR  L  KA+   H + M+ATPIPR+L LT  
Sbjct: 298 THAVLSKDVEFQSLALTIVDEEHRFGVKQRELLQLKASKGVHTISMSATPIPRSLALTIH 357

Query: 441 GD-IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           GD ID+  I   P GRKP++T +I +   ++   R+   +  G++AY +CP +EE     
Sbjct: 358 GDSIDVMNIKSLPKGRKPVETTLITVE--EDSYRRIYEEVKSGRQAYVVCPLVEESNSDM 415

Query: 500 FRSV------VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            + V        +  +  E     + +  G+M   D ++ ++ F N    + I+TT+IEV
Sbjct: 416 LKDVESVEEAFAKAKTYFEPKGIRVGMATGKMKQQDIDAELEKFANKEYDIFISTTIIEV 475

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G++V +A++I+I+NAE FGLAQLHQLRGRVGRG   S C+LL     ++    +L  +  
Sbjct: 476 GVNVPNATVILIKNAERFGLAQLHQLRGRVGRGSYQSYCLLL-SDKATEMGRRKLETMCE 534

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           T DGFLIAE+DL+ R  G+ +G  QSG  K+++     +  L E  R + K IL 
Sbjct: 535 TTDGFLIAEKDLELRGTGDFIGTSQSGQDKYVMLML-GNTDLNESIRNEVKDILK 588


>gi|294787301|ref|ZP_06752554.1| ATP-dependent DNA helicase RecG [Parascardovia denticolens F0305]
 gi|315227140|ref|ZP_07868927.1| DNA helicase RecG [Parascardovia denticolens DSM 10105]
 gi|294484657|gb|EFG32292.1| ATP-dependent DNA helicase RecG [Parascardovia denticolens F0305]
 gi|315119590|gb|EFT82723.1| DNA helicase RecG [Parascardovia denticolens DSM 10105]
          Length = 749

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 223/736 (30%), Positives = 350/736 (47%), Gaps = 67/736 (9%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++        T   D L Y+P    D   R  I +I   +       + +  +  +  R
Sbjct: 17  RRLGALKALGVTTVGDALTYYPFRVADPLPRGSIRQIKVGQKTAFAAKVRRVRTSSMNSR 76

Query: 88  RPYKI--LLNDGTGEITLLFFY---RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142
           R Y++   ++DG    + +FF       + L   F E R +   G+       +   HP 
Sbjct: 77  RGYRVEVQVDDGDAAASFVFFSYKKHYVDWLLGKFREKRLLVAAGEASIYGGSLQFTHPQ 136

Query: 143 YIFHNSQ--------DVNFPLI---EAVYSLPTGLSVDLFKKIIVEALSRLPV--LPEWI 189
            +    +        +  F  +   + VY   + +S +   + I+  +  L    +P+ I
Sbjct: 137 VLMVGQEPGMDVATTEEGFARLTEPQPVYHTSSRISSEHIHESILGLIPLLDPDSVPDII 196

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            +++ ++       +A   IH P   ++F W      R   +E L  Q ALL  R++ ++
Sbjct: 197 PEEVRKEWGLLHRFDALKAIHKPGTTEEF-WKGIGSMR--SEEALVSQTALLQEREKMRE 253

Query: 250 EIGIPINVE---GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
                 + E     + Q+ ++++PF  T  Q+  I+ I  DM Q   M R+LQG+VGSGK
Sbjct: 254 SKSFACSGEAGEEDLVQRFIQSLPFKLTAGQKEVIERIQADMGQAYPMSRLLQGEVGSGK 313

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEIITGNMPQAHR 364
           T+VAL +M  A +AG QA+++AP  +LAQQH+E I+       I   + ++TGNM  A R
Sbjct: 314 TVVALASMLRAAQAGYQALLVAPTQVLAQQHHESIRAMLTQAGIDLPLVLLTGNMRLADR 373

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHV 423
           RKAL   A G   I I THA F  S Q  +L L ++DEQHRFGV+QR  + Q A   PH+
Sbjct: 374 RKALAIPASGVPCIAIATHAAFSHSFQAPRLALEVIDEQHRFGVEQRETIRQAADVIPHL 433

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---IDEVIERLKVVLS 480
           L+MTATPIPR+  +T  G++DIS +TE P+GRKPI +V++  +    + ++    +  + 
Sbjct: 434 LVMTATPIPRSAAMTWFGNLDISWLTELPSGRKPITSVVVRESDGRTMGQMFLHARKRIE 493

Query: 481 EGKKAYWICPQIEEKKE-------------------------------SNFRSVVERFNS 509
            G++ Y ICP+I+E +                                 +   + +R  +
Sbjct: 494 AGERVYVICPRIDEDQVDEDSQGGEDLLPLQFDQEGLPLDSSAPSQPLHSVEEMSQRLAA 553

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L +     I I+ GR  +  K + M  F  G   LL+ATTVIEVG+DV  AS III +++
Sbjct: 554 LPQFQGVRIGILTGRDDEESKAAAMKDFTQGRAPLLVATTVIEVGVDVPQASCIIIFDSD 613

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN---SYTRLSVLKNTEDGFLIAEEDLK 626
           HFGL+QLHQLRGRVGRG   S    +    LS     +  RL V+++T DG  IA+ DL 
Sbjct: 614 HFGLSQLHQLRGRVGRGGTRSWAFFVTRVDLSDPDSLAARRLEVVRSTTDGAEIAKADLD 673

Query: 627 QRKEGEILGI---KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            R  G++LG        +  F + +      L+  AR  A+ IL  DP LT      +  
Sbjct: 674 LRGAGDVLGDSQSGGQSISSFKLLRVVKDADLITRARSQAESILRADPALTQANHIQLAG 733

Query: 684 LLYLYQYNEAFQFIRA 699
            +  +        + +
Sbjct: 734 AVLDFSRGSEDFLVSS 749


>gi|218290671|ref|ZP_03494762.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius
            LAA1]
 gi|218239336|gb|EED06534.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius
            LAA1]
          Length = 1183

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 147/457 (32%), Positives = 233/457 (50%), Gaps = 17/457 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  EW             +AG +  L  +++     G   + +           P+ 
Sbjct: 569  HSLGSSEWQKTKNRVKKSVRDIAGDLLKLYAKREA--TPGHAFSPDTPWQADFENMFPYE 626

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q  AI +I +DM +   M R+L GDVG GKT VA+ A   AV  G Q  ++ P  +
Sbjct: 627  ETPDQLRAIAEIKRDMEKPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVPTTV 686

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K+      + +E+++    +   ++ L+ +  G   I+IGTH L Q+S+Q+
Sbjct: 687  LAQQHYETFKERFAGFPVKIEMLSRFRTRKETQEVLKGLKEGTIDIVIGTHRLLQNSVQF 746

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+IVDE+ RFGV  + KL Q       L +TATPIPRTL ++ LG  D+S I   P
Sbjct: 747  KDLGLLIVDEEQRFGVTHKEKLKQLRANVDCLTLTATPIPRTLHMSMLGVRDLSIIETPP 806

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R P++T ++  N    V E ++  L+ G + Y++   ++         + ER  SL  
Sbjct: 807  ENRFPVQTYVVEYNE-GLVKEAIERELARGGQVYFVYNDVQTIH-----RMAERVQSLVP 860

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + +++ HG+M++ + E VM  F  G   +L+ TT+IE G+D+ + + +I+ +A+ FG
Sbjct: 861  D--ARVSVAHGQMAEAELERVMLDFLEGEYDVLVTTTIIETGLDIPNVNTLIVYDADKFG 918

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            L+QL+QLRGRVGR   I+     Y P   LS+ +  RL+ +K       GF IA  DL  
Sbjct: 919  LSQLYQLRGRVGRSNRIAYAYFTYQPAKVLSEVAEKRLAAIKEFTELGSGFKIAMRDLSI 978

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            R  G +LG +Q G    +     ++  LL+ A ++ +
Sbjct: 979  RGAGNLLGAEQHGFINSVGFD--MYTELLQQAIRELR 1013


>gi|258510200|ref|YP_003183634.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
 gi|257476926|gb|ACV57245.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
          Length = 1183

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 147/457 (32%), Positives = 233/457 (50%), Gaps = 17/457 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  EW             +AG +  L  +++     G   + +           P+ 
Sbjct: 569  HSLGSSEWQKTKNRVKKSVRDIAGDLLKLYAKREA--TPGHAFSPDTPWQADFENMFPYE 626

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q  AI +I +DM +   M R+L GDVG GKT VA+ A   AV  G Q  ++ P  +
Sbjct: 627  ETPDQLRAIAEIKRDMEKPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVPTTV 686

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K+      + +E+++    +   ++ L+ +  G   I+IGTH L Q+S+Q+
Sbjct: 687  LAQQHYETFKERFAGFPVKIEMLSRFRTRKETQEVLKGLKEGTIDIVIGTHRLLQNSVQF 746

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+IVDE+ RFGV  + KL Q       L +TATPIPRTL ++ LG  D+S I   P
Sbjct: 747  KDLGLLIVDEEQRFGVTHKEKLKQLRANVDCLTLTATPIPRTLHMSMLGVRDLSIIETPP 806

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R P++T ++  N    V E ++  L+ G + Y++   ++         + ER  SL  
Sbjct: 807  ENRFPVQTYVVEYNE-GLVKEAIERELARGGQVYFVYNDVQTIH-----RMAERVQSLVP 860

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + +++ HG+M++ + E VM  F  G   +L+ TT+IE G+D+ + + +I+ +A+ FG
Sbjct: 861  D--ARVSVAHGQMAEAELERVMLDFLEGEYDVLVTTTIIETGLDIPNVNTLIVYDADKFG 918

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            L+QL+QLRGRVGR   I+     Y P   LS+ +  RL+ +K       GF IA  DL  
Sbjct: 919  LSQLYQLRGRVGRSNRIAYAYFTYQPAKVLSEVAEKRLAAIKEFTELGSGFKIAMRDLSI 978

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            R  G +LG +Q G    +     ++  LL+ A ++ +
Sbjct: 979  RGAGNLLGAEQHGFINSVGFD--MYTELLQQAIRELR 1013


>gi|300922643|ref|ZP_07138740.1| transcription-repair coupling factor [Escherichia coli MS 182-1]
 gi|300420992|gb|EFK04303.1| transcription-repair coupling factor [Escherichia coli MS 182-1]
          Length = 1164

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTTHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1024


>gi|331646372|ref|ZP_08347475.1| transcription-repair coupling factor [Escherichia coli M605]
 gi|331045124|gb|EGI17251.1| transcription-repair coupling factor [Escherichia coli M605]
          Length = 1164

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1024


>gi|167837799|ref|ZP_02464682.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis MSMB43]
          Length = 447

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 194/439 (44%), Positives = 274/439 (62%), Gaps = 12/439 (2%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA
Sbjct: 11  LYAALPFTLTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQA 70

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTHA
Sbjct: 71  ALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKDKRAALEAAALGTAQLVIGTHA 130

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRTL 435
           + QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL
Sbjct: 131 MIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTL 190

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE 
Sbjct: 191 AMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEES 250

Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEVG
Sbjct: 251 ETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ T
Sbjct: 311 VDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRET 370

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++ + PD+ 
Sbjct: 371 TDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIARHPDIV 430

Query: 675 SVRGQSIRILLYLYQYNEA 693
           +      R L    QY +A
Sbjct: 431 AQ--HLARWLGAREQYLKA 447


>gi|301029579|ref|ZP_07192657.1| transcription-repair coupling factor [Escherichia coli MS 196-1]
 gi|299877574|gb|EFI85785.1| transcription-repair coupling factor [Escherichia coli MS 196-1]
          Length = 1148

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKYDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSM-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|331652166|ref|ZP_08353185.1| transcription-repair coupling factor [Escherichia coli M718]
 gi|331050444|gb|EGI22502.1| transcription-repair coupling factor [Escherichia coli M718]
          Length = 1164

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1024


>gi|324005970|gb|EGB75189.1| transcription-repair coupling factor [Escherichia coli MS 57-2]
          Length = 1164

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1024


>gi|301023324|ref|ZP_07187117.1| transcription-repair coupling factor [Escherichia coli MS 69-1]
 gi|300397049|gb|EFJ80587.1| transcription-repair coupling factor [Escherichia coli MS 69-1]
          Length = 1164

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1024


>gi|170682845|ref|YP_001744064.1| transcription-repair coupling factor [Escherichia coli SMS-3-5]
 gi|170520563|gb|ACB18741.1| transcription-repair coupling factor [Escherichia coli SMS-3-5]
          Length = 1148

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q+ +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQNDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRI 1008


>gi|300938685|ref|ZP_07153409.1| transcription-repair coupling factor [Escherichia coli MS 21-1]
 gi|300456330|gb|EFK19823.1| transcription-repair coupling factor [Escherichia coli MS 21-1]
          Length = 1164

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1024


>gi|170020491|ref|YP_001725445.1| transcription-repair coupling factor [Escherichia coli ATCC 8739]
 gi|169755419|gb|ACA78118.1| transcription-repair coupling factor [Escherichia coli ATCC 8739]
          Length = 1164

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1024


>gi|300948704|ref|ZP_07162781.1| transcription-repair coupling factor [Escherichia coli MS 116-1]
 gi|300956220|ref|ZP_07168532.1| transcription-repair coupling factor [Escherichia coli MS 175-1]
 gi|301644530|ref|ZP_07244523.1| transcription-repair coupling factor [Escherichia coli MS 146-1]
 gi|331641657|ref|ZP_08342792.1| transcription-repair coupling factor [Escherichia coli H736]
 gi|260449747|gb|ACX40169.1| transcription-repair coupling factor [Escherichia coli DH1]
 gi|300316948|gb|EFJ66732.1| transcription-repair coupling factor [Escherichia coli MS 175-1]
 gi|300451798|gb|EFK15418.1| transcription-repair coupling factor [Escherichia coli MS 116-1]
 gi|301077112|gb|EFK91918.1| transcription-repair coupling factor [Escherichia coli MS 146-1]
 gi|331038455|gb|EGI10675.1| transcription-repair coupling factor [Escherichia coli H736]
          Length = 1164

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSM-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1024


>gi|300928331|ref|ZP_07143866.1| transcription-repair coupling factor [Escherichia coli MS 187-1]
 gi|300463663|gb|EFK27156.1| transcription-repair coupling factor [Escherichia coli MS 187-1]
          Length = 1164

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1024


>gi|300917885|ref|ZP_07134518.1| transcription-repair coupling factor [Escherichia coli MS 115-1]
 gi|300414875|gb|EFJ98185.1| transcription-repair coupling factor [Escherichia coli MS 115-1]
          Length = 1164

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1024


>gi|110641290|ref|YP_669020.1| transcription-repair coupling factor [Escherichia coli 536]
 gi|300982404|ref|ZP_07176102.1| transcription-repair coupling factor [Escherichia coli MS 200-1]
 gi|110342882|gb|ABG69119.1| transcription-repair coupling factor [Escherichia coli 536]
 gi|300307241|gb|EFJ61761.1| transcription-repair coupling factor [Escherichia coli MS 200-1]
 gi|324013204|gb|EGB82423.1| transcription-repair coupling factor [Escherichia coli MS 60-1]
          Length = 1164

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1024


>gi|331672629|ref|ZP_08373418.1| transcription-repair coupling factor [Escherichia coli TA280]
 gi|331070272|gb|EGI41638.1| transcription-repair coupling factor [Escherichia coli TA280]
          Length = 1164

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1024


>gi|323976513|gb|EGB71601.1| transcription-repair coupling protein [Escherichia coli TW10509]
          Length = 1148

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q+ +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQNDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|301328512|ref|ZP_07221578.1| transcription-repair coupling factor [Escherichia coli MS 78-1]
 gi|307310109|ref|ZP_07589759.1| transcription-repair coupling factor [Escherichia coli W]
 gi|300845119|gb|EFK72879.1| transcription-repair coupling factor [Escherichia coli MS 78-1]
 gi|306909827|gb|EFN40321.1| transcription-repair coupling factor [Escherichia coli W]
 gi|315060391|gb|ADT74718.1| transcription-repair coupling factor [Escherichia coli W]
 gi|323379049|gb|ADX51317.1| transcription-repair coupling factor [Escherichia coli KO11]
 gi|324017516|gb|EGB86735.1| transcription-repair coupling factor [Escherichia coli MS 117-3]
          Length = 1164

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1024


>gi|209773002|gb|ACI84813.1| transcription-repair coupling factor [Escherichia coli]
 gi|326339337|gb|EGD63151.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str.
            1125]
          Length = 1148

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|284920939|emb|CBG34002.1| transcription-repair coupling factor [Escherichia coli 042]
          Length = 1164

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1024


>gi|300821105|ref|ZP_07101254.1| transcription-repair coupling factor [Escherichia coli MS 119-7]
 gi|331676906|ref|ZP_08377602.1| transcription-repair coupling factor [Escherichia coli H591]
 gi|300526404|gb|EFK47473.1| transcription-repair coupling factor [Escherichia coli MS 119-7]
 gi|331075595|gb|EGI46893.1| transcription-repair coupling factor [Escherichia coli H591]
          Length = 1164

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKS--GREPSLEDLTSQQTEVELRM 1024


>gi|300816816|ref|ZP_07097036.1| transcription-repair coupling factor [Escherichia coli MS 107-1]
 gi|300902508|ref|ZP_07120488.1| transcription-repair coupling factor [Escherichia coli MS 84-1]
 gi|301305647|ref|ZP_07211736.1| transcription-repair coupling factor [Escherichia coli MS 124-1]
 gi|309796542|ref|ZP_07690949.1| transcription-repair coupling factor [Escherichia coli MS 145-7]
 gi|300405409|gb|EFJ88947.1| transcription-repair coupling factor [Escherichia coli MS 84-1]
 gi|300530590|gb|EFK51652.1| transcription-repair coupling factor [Escherichia coli MS 107-1]
 gi|300839075|gb|EFK66835.1| transcription-repair coupling factor [Escherichia coli MS 124-1]
 gi|308119854|gb|EFO57116.1| transcription-repair coupling factor [Escherichia coli MS 145-7]
 gi|315253014|gb|EFU32982.1| transcription-repair coupling factor [Escherichia coli MS 85-1]
          Length = 1164

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1024


>gi|15830746|ref|NP_309519.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            Sakai]
 gi|168751336|ref|ZP_02776358.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4113]
 gi|168757829|ref|ZP_02782836.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4401]
 gi|168764889|ref|ZP_02789896.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4501]
 gi|168771340|ref|ZP_02796347.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4486]
 gi|168783484|ref|ZP_02808491.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4076]
 gi|168790092|ref|ZP_02815099.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC869]
 gi|168802501|ref|ZP_02827508.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC508]
 gi|195938873|ref|ZP_03084255.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4024]
 gi|208809609|ref|ZP_03251946.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4206]
 gi|208815000|ref|ZP_03256179.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4045]
 gi|208822485|ref|ZP_03262804.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4042]
 gi|209399391|ref|YP_002269959.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4115]
 gi|217328545|ref|ZP_03444627.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            TW14588]
 gi|254792497|ref|YP_003077334.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            TW14359]
 gi|261226982|ref|ZP_05941263.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            FRIK2000]
 gi|261256216|ref|ZP_05948749.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            FRIK966]
 gi|291282134|ref|YP_003498952.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
            CB9615]
 gi|13360956|dbj|BAB34915.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            Sakai]
 gi|188014612|gb|EDU52734.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4113]
 gi|188999153|gb|EDU68139.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4076]
 gi|189355265|gb|EDU73684.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4401]
 gi|189359855|gb|EDU78274.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4486]
 gi|189365183|gb|EDU83599.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4501]
 gi|189370352|gb|EDU88768.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC869]
 gi|189375509|gb|EDU93925.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC508]
 gi|208729410|gb|EDZ79011.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4206]
 gi|208731648|gb|EDZ80336.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4045]
 gi|208737970|gb|EDZ85653.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4042]
 gi|209160791|gb|ACI38224.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC4115]
 gi|209772998|gb|ACI84811.1| transcription-repair coupling factor [Escherichia coli]
 gi|209773000|gb|ACI84812.1| transcription-repair coupling factor [Escherichia coli]
 gi|209773004|gb|ACI84814.1| transcription-repair coupling factor [Escherichia coli]
 gi|209773006|gb|ACI84815.1| transcription-repair coupling factor [Escherichia coli]
 gi|217318972|gb|EEC27398.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            TW14588]
 gi|254591897|gb|ACT71258.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            TW14359]
 gi|290762007|gb|ADD55968.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
            CB9615]
 gi|320188121|gb|EFW62786.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str.
            EC1212]
 gi|320637565|gb|EFX07365.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            G5101]
 gi|320643126|gb|EFX12327.1| transcription-repair coupling factor [Escherichia coli O157:H- str.
            493-89]
 gi|320648584|gb|EFX17239.1| transcription-repair coupling factor [Escherichia coli O157:H- str. H
            2687]
 gi|320653898|gb|EFX21972.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
            3256-97 TW 07815]
 gi|320659379|gb|EFX26948.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
            USDA 5905]
 gi|320664514|gb|EFX31665.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
            LSU-61]
 gi|326340418|gb|EGD64221.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str.
            1044]
          Length = 1148

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|315296619|gb|EFU55914.1| transcription-repair coupling factor [Escherichia coli MS 16-3]
          Length = 1164

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1024


>gi|293414407|ref|ZP_06657056.1| transcription-repair coupling factor [Escherichia coli B185]
 gi|291434465|gb|EFF07438.1| transcription-repair coupling factor [Escherichia coli B185]
          Length = 1148

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|323175654|gb|EFZ61248.1| transcription-repair coupling factor [Escherichia coli 1180]
          Length = 1148

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|293404403|ref|ZP_06648397.1| transcription-repair coupling factor [Escherichia coli FVEC1412]
 gi|298380180|ref|ZP_06989785.1| transcription-repair coupling factor [Escherichia coli FVEC1302]
 gi|300896877|ref|ZP_07115367.1| transcription-repair coupling factor [Escherichia coli MS 198-1]
 gi|291428989|gb|EFF02014.1| transcription-repair coupling factor [Escherichia coli FVEC1412]
 gi|298279878|gb|EFI21386.1| transcription-repair coupling factor [Escherichia coli FVEC1302]
 gi|300359284|gb|EFJ75154.1| transcription-repair coupling factor [Escherichia coli MS 198-1]
          Length = 1164

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--YAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G +AY++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQAYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1024


>gi|323185763|gb|EFZ71124.1| transcription-repair coupling factor [Escherichia coli 1357]
          Length = 1148

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|332279698|ref|ZP_08392111.1| transcription-repair coupling factor [Shigella sp. D9]
 gi|332102050|gb|EGJ05396.1| transcription-repair coupling factor [Shigella sp. D9]
          Length = 1169

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 571  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 628

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 629  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 688

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 689  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 748

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 749  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 808

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 809  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 860

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 861  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 920

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 921  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 980

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 981  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1029


>gi|315135746|dbj|BAJ42905.1| transcription-repair coupling factor [Escherichia coli DH1]
          Length = 1169

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 571  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 628

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 629  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 688

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 689  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 748

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 749  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 808

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 809  TFVREYDSM-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 860

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 861  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 920

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 921  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 980

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 981  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1029


>gi|188491808|ref|ZP_02999078.1| transcription-repair coupling factor [Escherichia coli 53638]
 gi|188487007|gb|EDU62110.1| transcription-repair coupling factor [Escherichia coli 53638]
          Length = 1148

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQCDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|90109237|pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
            Coupling Factor
 gi|90109238|pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
            Coupling Factor
          Length = 1151

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 553  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 611  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 671  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 731  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 791  TFVREYDSM-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 843  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 963  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1011


>gi|260867476|ref|YP_003233878.1| transcription-repair coupling factor Mfd [Escherichia coli O111:H-
            str. 11128]
 gi|257763832|dbj|BAI35327.1| transcription-repair coupling factor Mfd [Escherichia coli O111:H-
            str. 11128]
          Length = 1148

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|331682620|ref|ZP_08383239.1| transcription-repair coupling factor [Escherichia coli H299]
 gi|331080251|gb|EGI51430.1| transcription-repair coupling factor [Escherichia coli H299]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|324113535|gb|EGC07510.1| transcription-repair coupling protein [Escherichia fergusonii B253]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q+ +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQNDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|330910930|gb|EGH39440.1| transcription-repair coupling factor [Escherichia coli AA86]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|187730283|ref|YP_001880716.1| transcription-repair coupling factor [Shigella boydii CDC 3083-94]
 gi|187427275|gb|ACD06549.1| transcription-repair coupling factor [Shigella boydii CDC 3083-94]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|157160641|ref|YP_001457959.1| transcription-repair coupling factor [Escherichia coli HS]
 gi|312971250|ref|ZP_07785428.1| transcription-repair coupling factor [Escherichia coli 1827-70]
 gi|157066321|gb|ABV05576.1| transcription-repair coupling factor [Escherichia coli HS]
 gi|310336452|gb|EFQ01638.1| transcription-repair coupling factor [Escherichia coli 1827-70]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|323962713|gb|EGB58291.1| transcription-repair coupling protein [Escherichia coli H489]
 gi|323973296|gb|EGB68485.1| transcription-repair coupling protein [Escherichia coli TA007]
 gi|332342663|gb|AEE55997.1| transcription-repair coupling factor protein [Escherichia coli
            UMNK88]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|215486325|ref|YP_002328756.1| transcription-repair coupling factor [Escherichia coli O127:H6 str.
            E2348/69]
 gi|312968807|ref|ZP_07783014.1| transcription-repair coupling factor [Escherichia coli 2362-75]
 gi|215264397|emb|CAS08754.1| transcription-repair coupling factor [Escherichia coli O127:H6 str.
            E2348/69]
 gi|312286209|gb|EFR14122.1| transcription-repair coupling factor [Escherichia coli 2362-75]
 gi|323190466|gb|EFZ75740.1| transcription-repair coupling factor [Escherichia coli RN587/1]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|325497055|gb|EGC94914.1| transcription-repair coupling factor [Escherichia fergusonii ECD227]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q+ +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQNDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|256018630|ref|ZP_05432495.1| transcription-repair coupling factor [Shigella sp. D9]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|218548644|ref|YP_002382435.1| transcription-repair coupling factor [Escherichia fergusonii ATCC
            35469]
 gi|218356185|emb|CAQ88802.1| transcription-repair coupling factor [Escherichia fergusonii ATCC
            35469]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q+ +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQNDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|82544418|ref|YP_408365.1| transcription-repair coupling factor [Shigella boydii Sb227]
 gi|81245829|gb|ABB66537.1| transcription-repair coupling factor [Shigella boydii Sb227]
 gi|320175622|gb|EFW50714.1| Transcription-repair coupling factor [Shigella dysenteriae CDC
            74-1112]
 gi|320184241|gb|EFW59055.1| Transcription-repair coupling factor [Shigella flexneri CDC 796-83]
 gi|332094450|gb|EGI99499.1| transcription-repair coupling factor [Shigella boydii 3594-74]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|16129077|ref|NP_415632.1| transcription-repair coupling factor [Escherichia coli str. K-12
            substr. MG1655]
 gi|89107960|ref|AP_001740.1| transcription-repair coupling factor [Escherichia coli str. K-12
            substr. W3110]
 gi|170080765|ref|YP_001730085.1| transcription-repair coupling factor [Escherichia coli str. K-12
            substr. DH10B]
 gi|238900368|ref|YP_002926164.1| transcription-repair coupling factor [Escherichia coli BW2952]
 gi|256023188|ref|ZP_05437053.1| transcription-repair coupling factor [Escherichia sp. 4_1_40B]
 gi|307137749|ref|ZP_07497105.1| transcription-repair coupling factor [Escherichia coli H736]
 gi|2507063|sp|P30958|MFD_ECOLI RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|1651547|dbj|BAA35929.1| transcription-repair coupling factor [Escherichia coli str. K12
            substr. W3110]
 gi|1787357|gb|AAC74198.1| transcription-repair coupling factor [Escherichia coli str. K-12
            substr. MG1655]
 gi|169888600|gb|ACB02307.1| transcription-repair coupling factor [Escherichia coli str. K-12
            substr. DH10B]
 gi|238863683|gb|ACR65681.1| transcription-repair coupling factor [Escherichia coli BW2952]
 gi|309701385|emb|CBJ00686.1| transcription-repair coupling factor [Escherichia coli ETEC H10407]
 gi|323937854|gb|EGB34118.1| transcription-repair coupling protein [Escherichia coli E1520]
 gi|323942583|gb|EGB38750.1| transcription-repair coupling protein [Escherichia coli E482]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSM-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|218700384|ref|YP_002408013.1| transcription-repair coupling factor [Escherichia coli IAI39]
 gi|293409480|ref|ZP_06653056.1| transcription-repair coupling factor [Escherichia coli B354]
 gi|218370370|emb|CAR18173.1| transcription-repair coupling factor [Escherichia coli IAI39]
 gi|291469948|gb|EFF12432.1| transcription-repair coupling factor [Escherichia coli B354]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|281600530|gb|ADA73514.1| Transcription-repair coupling factor [Shigella flexneri 2002017]
          Length = 1169

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 571  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 628

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 629  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 688

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 689  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 748

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 749  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 808

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 809  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 860

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 861  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 920

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 921  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 980

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 981  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1029


>gi|191168584|ref|ZP_03030368.1| transcription-repair coupling factor [Escherichia coli B7A]
 gi|209918370|ref|YP_002292454.1| transcription-repair coupling factor [Escherichia coli SE11]
 gi|218553691|ref|YP_002386604.1| transcription-repair coupling factor [Escherichia coli IAI1]
 gi|218694647|ref|YP_002402314.1| transcription-repair coupling factor [Escherichia coli 55989]
 gi|260854597|ref|YP_003228488.1| transcription-repair coupling factor Mfd [Escherichia coli O26:H11
            str. 11368]
 gi|190901378|gb|EDV61143.1| transcription-repair coupling factor [Escherichia coli B7A]
 gi|209911629|dbj|BAG76703.1| transcription-repair coupling factor [Escherichia coli SE11]
 gi|218351379|emb|CAU97085.1| transcription-repair coupling factor [Escherichia coli 55989]
 gi|218360459|emb|CAQ98013.1| transcription-repair coupling factor [Escherichia coli IAI1]
 gi|257753246|dbj|BAI24748.1| transcription-repair coupling factor Mfd [Escherichia coli O26:H11
            str. 11368]
 gi|323156751|gb|EFZ42887.1| transcription-repair coupling factor [Escherichia coli EPECa14]
 gi|323175269|gb|EFZ60882.1| transcription-repair coupling factor [Escherichia coli LT-68]
 gi|323947582|gb|EGB43586.1| transcription-repair coupling protein [Escherichia coli H120]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|193066296|ref|ZP_03047347.1| transcription-repair coupling factor [Escherichia coli E22]
 gi|194429791|ref|ZP_03062305.1| transcription-repair coupling factor [Escherichia coli B171]
 gi|260843354|ref|YP_003221132.1| transcription-repair coupling factor Mfd [Escherichia coli O103:H2
            str. 12009]
 gi|192926068|gb|EDV80711.1| transcription-repair coupling factor [Escherichia coli E22]
 gi|194412138|gb|EDX28446.1| transcription-repair coupling factor [Escherichia coli B171]
 gi|257758501|dbj|BAI29998.1| transcription-repair coupling factor Mfd [Escherichia coli O103:H2
            str. 12009]
 gi|323163658|gb|EFZ49480.1| transcription-repair coupling factor [Escherichia coli E128010]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|320179184|gb|EFW54142.1| Transcription-repair coupling factor [Shigella boydii ATCC 9905]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|281178224|dbj|BAI54554.1| transcription-repair coupling factor [Escherichia coli SE15]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFMAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|332089282|gb|EGI94388.1| transcription-repair coupling factor [Shigella boydii 5216-82]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|293433403|ref|ZP_06661831.1| transcription-repair coupling factor [Escherichia coli B088]
 gi|331667514|ref|ZP_08368378.1| transcription-repair coupling factor [Escherichia coli TA271]
 gi|291324222|gb|EFE63644.1| transcription-repair coupling factor [Escherichia coli B088]
 gi|320201009|gb|EFW75593.1| Transcription-repair coupling factor [Escherichia coli EC4100B]
 gi|331065099|gb|EGI36994.1| transcription-repair coupling factor [Escherichia coli TA271]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKS--GREPSLEDLTSQQTEVELRM 1008


>gi|315618286|gb|EFU98876.1| transcription-repair coupling factor [Escherichia coli 3431]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSM-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|191173073|ref|ZP_03034606.1| transcription-repair coupling factor [Escherichia coli F11]
 gi|190906618|gb|EDV66224.1| transcription-repair coupling factor [Escherichia coli F11]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|299362|gb|AAB26029.1| Mfd protein, transcription repair coupling factor, TRCF=mfd product
            [Escherichia coli, Peptide, 1148 aa]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSM-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|331662525|ref|ZP_08363448.1| transcription-repair coupling factor [Escherichia coli TA143]
 gi|331060947|gb|EGI32911.1| transcription-repair coupling factor [Escherichia coli TA143]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|74311675|ref|YP_310094.1| transcription-repair coupling factor [Shigella sonnei Ss046]
 gi|73855152|gb|AAZ87859.1| transcription-repair coupling factor [Shigella sonnei Ss046]
 gi|323165624|gb|EFZ51411.1| transcription-repair coupling factor [Shigella sonnei 53G]
          Length = 1148

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|121535095|ref|ZP_01666912.1| transcription-repair coupling factor [Thermosinus carboxydivorans
           Nor1]
 gi|121306345|gb|EAX47270.1| transcription-repair coupling factor [Thermosinus carboxydivorans
           Nor1]
          Length = 1109

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 148/462 (32%), Positives = 237/462 (51%), Gaps = 21/462 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW        A    LA ++  L   +Q     G     +    ++     P+  T  Q 
Sbjct: 499 EWQKATSRAKAAVADLAKELIALYAARQ--VTPGFAFEPDTPWQKEFEEAFPYEETPDQL 556

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI +I +DM     M R+L GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQHY
Sbjct: 557 QAISEIKRDMEAPRPMDRLLCGDVGFGKTEVAIRAAFKAVMSGKQVAVLVPTTVLAQQHY 616

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +           +V++I+       ++  L ++  GQ  ++IGTH L    +Q+  L L+
Sbjct: 617 QTFSSRFAGFGPVVDVISRFRSPKEQKATLAKVRAGQVDVLIGTHRLLNPDVQFKDLGLL 676

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV Q+ KL +  T   VL ++ATPIPRTL ++ +G  D+S I   P  R P+
Sbjct: 677 IVDEEQRFGVAQKEKLKKWRTNIDVLTLSATPIPRTLHMSLVGARDMSIIETPPEERYPV 736

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T ++  +  + V + ++  L  G + Y++  +++   + + R        L E    + 
Sbjct: 737 QTYVVEYHE-EVVRDAIRRELRRGGQVYFVYNRVQTIDKMHSR--------LSEILPDAR 787

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I + HG+MS+   E VM  F  G   +L+ T++IE G+DV +A+ II+ +A+ FGLAQL+
Sbjct: 788 IGVAHGQMSEDRLERVMLDFYEGNYDILVCTSIIESGLDVPNANTIIVYDADKFGLAQLY 847

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           Q+RGRVGR   ++     Y     L++ +  RL  +K   +   GF IA  DL+ R  G 
Sbjct: 848 QMRGRVGRTHRMAYAYFTYQRDKVLTEVAEKRLQAIKEFAELGAGFKIAMRDLEIRGAGN 907

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK--HILTQDPD 672
           ILG +Q G    L    E++  LL+ A ++ +   ++   P+
Sbjct: 908 ILGPQQHGHI--LSVGFEMYCRLLDEAVQELRTGKVVQPPPE 947


>gi|157158427|ref|YP_001462347.1| transcription-repair coupling factor [Escherichia coli E24377A]
 gi|193070928|ref|ZP_03051859.1| transcription-repair coupling factor [Escherichia coli E110019]
 gi|157080457|gb|ABV20165.1| transcription-repair coupling factor [Escherichia coli E24377A]
 gi|192955782|gb|EDV86254.1| transcription-repair coupling factor [Escherichia coli E110019]
 gi|324117315|gb|EGC11222.1| transcription-repair coupling protein [Escherichia coli E1167]
          Length = 1148

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|56479827|ref|NP_707029.2| transcription-repair coupling factor [Shigella flexneri 2a str. 301]
 gi|56383378|gb|AAN42736.2| transcription-repair coupling factor [Shigella flexneri 2a str. 301]
          Length = 1148

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|30062647|ref|NP_836818.1| transcription-repair coupling factor [Shigella flexneri 2a str.
            2457T]
 gi|30040893|gb|AAP16624.1| transcription-repair coupling factor [Shigella flexneri 2a str.
            2457T]
 gi|313650430|gb|EFS14837.1| transcription-repair coupling factor [Shigella flexneri 2a str.
            2457T]
 gi|332758277|gb|EGJ88600.1| transcription-repair coupling factor [Shigella flexneri 4343-70]
 gi|332759433|gb|EGJ89741.1| transcription-repair coupling factor [Shigella flexneri 2747-71]
 gi|332761054|gb|EGJ91341.1| transcription-repair coupling factor [Shigella flexneri K-671]
 gi|332767336|gb|EGJ97530.1| transcription-repair coupling factor [Shigella flexneri 2930-71]
 gi|333005518|gb|EGK25036.1| transcription-repair coupling factor [Shigella flexneri K-218]
 gi|333019350|gb|EGK38633.1| transcription-repair coupling factor [Shigella flexneri K-304]
          Length = 1148

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|320197559|gb|EFW72172.1| Transcription-repair coupling factor [Escherichia coli WV_060327]
          Length = 1148

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|227886529|ref|ZP_04004334.1| transcription-repair coupling factor TRCF [Escherichia coli 83972]
 gi|301051097|ref|ZP_07197931.1| transcription-repair coupling factor [Escherichia coli MS 185-1]
 gi|227836733|gb|EEJ47199.1| transcription-repair coupling factor TRCF [Escherichia coli 83972]
 gi|300297269|gb|EFJ53654.1| transcription-repair coupling factor [Escherichia coli MS 185-1]
 gi|307553115|gb|ADN45890.1| transcription-repair coupling factor [Escherichia coli ABU 83972]
 gi|315291014|gb|EFU50379.1| transcription-repair coupling factor [Escherichia coli MS 153-1]
          Length = 1164

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVDLRM 1024


>gi|218704525|ref|YP_002412044.1| transcription-repair coupling factor [Escherichia coli UMN026]
 gi|218431622|emb|CAR12501.1| transcription-repair coupling factor [Escherichia coli UMN026]
          Length = 1148

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--YAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G +AY++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQAYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|260597486|ref|YP_003210057.1| transcription-repair coupling factor [Cronobacter turicensis z3032]
 gi|260216663|emb|CBA29998.1| Transcription-repair-coupling factor [Cronobacter turicensis z3032]
          Length = 1167

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 163/496 (32%), Positives = 249/496 (50%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S        + P  K     W+   ++       +A ++  +  ++  K   G    
Sbjct: 546  HLISRYAGGAEENAPLHKLGSDAWSKARQKAAEKVRDVAAELLDIYAQRAAK--SGFAFK 603

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             + +  Q      PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   
Sbjct: 604  HDKEQYQLFCEGFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 663

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AVE   Q  ++ P  +LAQQH++  +    N  + +E+++       + + LE+ A G+ 
Sbjct: 664  AVENNKQVAVLVPTTLLAQQHFDNFRDRFANWPVRIELLSRFRSAKEQAQVLEQAADGKV 723

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL 
Sbjct: 724  DILIGTHKLLQSDVKMKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLN 783

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   PA R  +KT +   + +  V E +   +  G + Y++   +E   
Sbjct: 784  MAMSGMRDLSIIATPPARRLAVKTFVREYDNL-VVREAILREVLRGGQVYYLYNDVE--- 839

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              N +   ER  +L     + IAI HG+M + + E VM+ F +    +L+ TT+IE GID
Sbjct: 840  --NIQKAAERLANLVPE--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 895

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  PP  ++ ++  RL  + + 
Sbjct: 896  IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPPPKAMTTDAQKRLEAIASL 955

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG  QSG  + +     L+  LLE A    K    ++P
Sbjct: 956  EDLGAGFALATHDLEIRGAGELLGEDQSGQMETIGFS--LYMELLENAVDALKA--GREP 1011

Query: 672  DLTSVRGQSIRILLYL 687
             L  +  Q   + L +
Sbjct: 1012 SLEDLTSQQTEVELRM 1027


>gi|333004926|gb|EGK24446.1| transcription-repair coupling factor [Shigella flexneri VA-6]
          Length = 1148

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLNDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|315287490|gb|EFU46901.1| transcription-repair coupling factor [Escherichia coli MS 110-3]
          Length = 1164

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVDLRM 1024


>gi|15801231|ref|NP_287248.1| transcription-repair coupling factor [Escherichia coli O157:H7
            EDL933]
 gi|12514664|gb|AAG55860.1|AE005321_3 transcription-repair coupling factor; mutation frequency decline
            [Escherichia coli O157:H7 str. EDL933]
          Length = 1148

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMXQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|167036600|ref|YP_001664178.1| transcription-repair coupling factor [Thermoanaerobacter
            pseudethanolicus ATCC 33223]
 gi|320115027|ref|YP_004185186.1| transcription-repair coupling factor [Thermoanaerobacter brockii
            subsp. finnii Ako-1]
 gi|166855434|gb|ABY93842.1| transcription-repair coupling factor [Thermoanaerobacter
            pseudethanolicus ATCC 33223]
 gi|319928118|gb|ADV78803.1| transcription-repair coupling factor [Thermoanaerobacter brockii
            subsp. finnii Ako-1]
          Length = 1165

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 163/561 (29%), Positives = 267/561 (47%), Gaps = 46/561 (8%)

Query: 125  VTGKIKKLKNRIIMVHPHYIFHNSQDV----------NFPLIEAVYSLP-TGLSVDLFKK 173
            + G+ K+ K  + + +   I   ++                 E +  +   G+  D   K
Sbjct: 476  IFGQTKRRKRTVKIKNADKIKSFTELEIGSYVVHVNYGIGKYEGIEKIKVDGIVRDYL-K 534

Query: 174  IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAY 230
            II      L V  E +  DL+QK   P+         NP K       EW    R+    
Sbjct: 535  IIYAGGDTLFVPVEQL--DLVQKYVGPT--------DNPPKLNKLGGSEWLRAKRKAKKA 584

Query: 231  DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
             E LA  +  L  ++Q     G   + +    ++     P+  T+ Q   IK+I +DM +
Sbjct: 585  VEDLAKDLIQLYAKRQ--MVKGHAFSPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDMEK 642

Query: 291  KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
               M R+L GDVG GKT VAL A   AV  G Q   + P  ILA QHY    +  +   +
Sbjct: 643  DRPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVAFLCPTTILAYQHYANFIERFKEFPV 702

Query: 351  IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +E+++       + K ++ +A G   II+GTH L Q+ I++  L L+I+DE+ RFGV  
Sbjct: 703  KIEMLSRFRTPKEQSKIIKELAEGNIDIIVGTHRLLQNDIKFKDLGLLIIDEEQRFGVVH 762

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            + K+ +      VL ++ATPIPRTL ++ +G  D+S +   P  R P++T ++  N  + 
Sbjct: 763  KEKIKKLKENIDVLTLSATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNE-EL 821

Query: 471  VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDI 528
            + + +   ++ G + Y++  ++         + +E+  S  +       +A+ HG+M + 
Sbjct: 822  IKDAILREIARGGQVYFVYNRV---------NGIEKMASFVKDLVPGCRVAVAHGQMEES 872

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
              E VM  F NG   +L++TT+IE G+D+ + + II+ +A+  GL+QL+QLRGRVGR   
Sbjct: 873  QLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGLSQLYQLRGRVGRSNR 932

Query: 589  ISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK 643
            ++     Y     LS+ +  RL  +K       GF IA  DL+ R  G +LG +Q G   
Sbjct: 933  LAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHGHID 992

Query: 644  FLIAQPELHDSLLEIARKDAK 664
             +     L   LLE A ++ K
Sbjct: 993  AIGYDLYL--KLLEEAIRNLK 1011


>gi|91210269|ref|YP_540255.1| transcription-repair coupling factor [Escherichia coli UTI89]
 gi|237706900|ref|ZP_04537381.1| transcription-repair coupling factor [Escherichia sp. 3_2_53FAA]
 gi|91071843|gb|ABE06724.1| transcription-repair coupling factor; mutation frequency decline
            [Escherichia coli UTI89]
 gi|226898110|gb|EEH84369.1| transcription-repair coupling factor [Escherichia sp. 3_2_53FAA]
          Length = 1169

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 571  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 628

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 629  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 688

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 689  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 748

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 749  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 808

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 809  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 860

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 861  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 920

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 921  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 980

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 981  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVDLRM 1029


>gi|323967055|gb|EGB62481.1| transcription-repair coupling protein [Escherichia coli M863]
 gi|327253513|gb|EGE65151.1| transcription-repair coupling factor [Escherichia coli STEC_7v]
          Length = 1148

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q+ +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQNDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERMAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|117623299|ref|YP_852212.1| transcription-repair coupling factor [Escherichia coli APEC O1]
 gi|115512423|gb|ABJ00498.1| transcription-repair coupling factor; mutation frequency decline
            [Escherichia coli APEC O1]
          Length = 1164

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCGSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVDLRM 1024


>gi|253773863|ref|YP_003036694.1| transcription-repair coupling factor [Escherichia coli
            'BL21-Gold(DE3)pLysS AG']
 gi|253324907|gb|ACT29509.1| transcription-repair coupling factor [Escherichia coli
            'BL21-Gold(DE3)pLysS AG']
          Length = 1164

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +      + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSHQTEVELRM 1024


>gi|110805128|ref|YP_688648.1| transcription-repair coupling factor [Shigella flexneri 5 str. 8401]
 gi|110614676|gb|ABF03343.1| transcription-repair coupling factor [Shigella flexneri 5 str. 8401]
          Length = 1169

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 571  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 628

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 629  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 688

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 689  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 748

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
             DE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 749  ADEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 808

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 809  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 860

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 861  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 920

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 921  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 980

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 981  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1029


>gi|218557995|ref|YP_002390908.1| transcription-repair coupling factor [Escherichia coli S88]
 gi|218364764|emb|CAR02454.1| transcription-repair coupling factor [Escherichia coli S88]
 gi|294491241|gb|ADE89997.1| transcription-repair coupling factor [Escherichia coli IHE3034]
 gi|307627415|gb|ADN71719.1| transcription-repair coupling factor [Escherichia coli UM146]
 gi|323957940|gb|EGB53652.1| transcription-repair coupling protein [Escherichia coli H263]
          Length = 1148

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVDLRM 1008


>gi|222032867|emb|CAP75606.1| Transcription-repair-coupling factor [Escherichia coli LF82]
 gi|312945676|gb|ADR26503.1| transcription-repair coupling factor [Escherichia coli O83:H1 str.
            NRG 857C]
          Length = 1148

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVDLRM 1008


>gi|218689066|ref|YP_002397278.1| transcription-repair coupling factor [Escherichia coli ED1a]
 gi|218426630|emb|CAR07458.1| transcription-repair coupling factor [Escherichia coli ED1a]
          Length = 1148

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVDLRM 1008


>gi|306814036|ref|ZP_07448209.1| transcription-repair coupling factor [Escherichia coli NC101]
 gi|305852673|gb|EFM53121.1| transcription-repair coupling factor [Escherichia coli NC101]
          Length = 1148

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVDLRM 1008


>gi|194439730|ref|ZP_03071799.1| transcription-repair coupling factor [Escherichia coli 101-1]
 gi|194421349|gb|EDX37367.1| transcription-repair coupling factor [Escherichia coli 101-1]
          Length = 1148

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDTQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|156934399|ref|YP_001438315.1| transcription-repair coupling factor [Cronobacter sakazakii ATCC
            BAA-894]
 gi|156532653|gb|ABU77479.1| hypothetical protein ESA_02230 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1148

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 161/473 (34%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G     + +  Q      PF  T  Q  
Sbjct: 550  WSKARQKAAEKVRDVAAELLDIYAQRAAK--SGFAFKHDKEQYQLFCEGFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + LE+ A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIELLSRFRSAKEQAQVLEQAAEGKVDILIGTHKLLQSDVKMKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER  +L     + IA
Sbjct: 788  TFVREYDNL-VVREAILREVLRGGQVYYLYNDVE-----NIQKAAERLANLVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPPPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEDQSGQMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|296102868|ref|YP_003613014.1| transcription-repair coupling factor [Enterobacter cloacae subsp.
            cloacae ATCC 13047]
 gi|295057327|gb|ADF62065.1| transcription-repair coupling factor [Enterobacter cloacae subsp.
            cloacae ATCC 13047]
          Length = 1148

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WARARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDKEQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + LE+   G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSTKEQTQILEQAREGKIDILIGTHKLLQSDVKWKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   +R   L     + IA
Sbjct: 788  TFVREYDNL-VVREAILREVLRGGQVYYLYNDVE-----NIQKAADRLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEDQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|333008322|gb|EGK27796.1| transcription-repair coupling factor [Shigella flexneri K-272]
 gi|333019810|gb|EGK39082.1| transcription-repair coupling factor [Shigella flexneri K-227]
          Length = 1148

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV  + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVLHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|332092875|gb|EGI97943.1| transcription-repair coupling factor [Shigella dysenteriae 155-74]
          Length = 1148

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q+  M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQQLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAITSLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|254161220|ref|YP_003044328.1| transcription-repair coupling factor [Escherichia coli B str. REL606]
 gi|242376916|emb|CAQ31635.1| transcription-repair coupling factor [Escherichia coli BL21(DE3)]
 gi|253973121|gb|ACT38792.1| transcription-repair coupling factor [Escherichia coli B str. REL606]
 gi|253977335|gb|ACT43005.1| transcription-repair coupling factor [Escherichia coli BL21(DE3)]
          Length = 1148

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +      + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSHQTEVELRM 1008


>gi|323953199|gb|EGB49065.1| transcription-repair coupling protein [Escherichia coli H252]
          Length = 1148

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCGSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVDLRM 1008


>gi|300974586|ref|ZP_07172647.1| transcription-repair coupling factor [Escherichia coli MS 45-1]
 gi|300410528|gb|EFJ94066.1| transcription-repair coupling factor [Escherichia coli MS 45-1]
          Length = 1164

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A  +  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 566  WSRARQKAAEKVRDVAAGLLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 624  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 684  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 744  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 804  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 976  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVDLRM 1024


>gi|194433692|ref|ZP_03065968.1| transcription-repair coupling factor [Shigella dysenteriae 1012]
 gi|194418121|gb|EDX34214.1| transcription-repair coupling factor [Shigella dysenteriae 1012]
          Length = 1148

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQHLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAITSLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|326390842|ref|ZP_08212394.1| transcription-repair coupling factor [Thermoanaerobacter ethanolicus
            JW 200]
 gi|325993101|gb|EGD51541.1| transcription-repair coupling factor [Thermoanaerobacter ethanolicus
            JW 200]
          Length = 1169

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 164/578 (28%), Positives = 271/578 (46%), Gaps = 46/578 (7%)

Query: 108  RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV----------NFPLIE 157
            +  E +   F       + G+ K+ K  + + +   I   ++                 E
Sbjct: 459  KGFEYVDAKFAVISDGEIFGQTKRSKKTVKIRNADKIKSFTELEVGSYVVHVNYGIGKYE 518

Query: 158  AVYSLP-TGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
             +  +   G+  D   KII      L V  E +  DL+QK   P+         NP K  
Sbjct: 519  GIEKIKVDGIIRDYL-KIIYAGGDTLFVPVEQL--DLVQKYVGPT--------DNPPKLN 567

Query: 217  DF---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                 EW    R+     E LA  +  L  ++Q     G   + +    ++     P+  
Sbjct: 568  KLGGSEWLRAKRKAKKAVEDLAKDLIQLYAKRQ--MVKGHAFSPDTPWQKEFEEQFPYEE 625

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T+ Q   IK+I +DM +   M R+L GDVG GKT VAL A   AV  G Q   + P  IL
Sbjct: 626  TEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVAFLCPTTIL 685

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            A QHY    +  +   + +E+++       + + ++ +A G   II+GTH L Q+ +++ 
Sbjct: 686  AYQHYTNFIERFKEFPVKIEMLSRFRTPKEQAQIIKGLAEGTIDIIVGTHRLLQNDVKFK 745

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L L+I+DE+ RFGV  + K+ +      VL ++ATPIPRTL ++ +G  D+S +   P 
Sbjct: 746  DLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLIGIRDMSVLENPPE 805

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             R P++T ++  N  + + + +   +  G + Y++  ++         + +E+  SL + 
Sbjct: 806  DRFPVETYVMEFNE-ELIKDAILREIGRGGQVYFVYNRV---------NGIEKMASLVKD 855

Query: 514  FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                  +A+ HG+M +   E VM  F NG   +L++TT+IE G+D+ + + II+ +A+  
Sbjct: 856  LVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKL 915

Query: 572  GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLK 626
            GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL+
Sbjct: 916  GLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMRDLE 975

Query: 627  QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R  G +LG +Q G    +     L   LLE A ++ K
Sbjct: 976  IRGAGNLLGAEQHGHINAIGYDLYL--KLLEEAIRNLK 1011


>gi|307265094|ref|ZP_07546654.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii
            Rt8.B1]
 gi|306919892|gb|EFN50106.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii
            Rt8.B1]
          Length = 1169

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 164/578 (28%), Positives = 271/578 (46%), Gaps = 46/578 (7%)

Query: 108  RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV----------NFPLIE 157
            +  E +   F       + G+ K+ K  + + +   I   ++                 E
Sbjct: 459  KGFEYVDAKFAVISDGEIFGQTKRSKKTVKIRNADKIKSFTELEVGSYVVHVNYGIGKYE 518

Query: 158  AVYSLP-TGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
             +  +   G+  D   KII      L V  E +  DL+QK   P+         NP K  
Sbjct: 519  GIEKIKVDGIIRDYL-KIIYAGGDTLFVPVEQL--DLVQKYVGPT--------DNPPKLN 567

Query: 217  DF---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                 EW    R+     E LA  +  L  ++Q     G   + +    ++     P+  
Sbjct: 568  KLGGSEWLRAKRKAKKAVEDLAKDLIQLYAKRQ--MVKGHAFSPDTPWQKEFEEQFPYEE 625

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T+ Q   IK+I +DM +   M R+L GDVG GKT VAL A   AV  G Q   + P  IL
Sbjct: 626  TEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVAFLCPTTIL 685

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            A QHY    +  +   + +E+++       + + ++ +A G   II+GTH L Q+ +++ 
Sbjct: 686  AYQHYTNFIERFKEFPVKIEMLSRFRTPKEQAQIIKGLAEGTIDIIVGTHRLLQNDVKFK 745

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L L+I+DE+ RFGV  + K+ +      VL ++ATPIPRTL ++ +G  D+S +   P 
Sbjct: 746  DLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLIGIRDMSVLENPPE 805

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             R P++T ++  N  + + + +   +  G + Y++  ++         + +E+  SL + 
Sbjct: 806  DRFPVETYVMEFNE-ELIKDAILREIGRGGQVYFVYNRV---------NGIEKMASLVKD 855

Query: 514  FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                  +A+ HG+M +   E VM  F NG   +L++TT+IE G+D+ + + II+ +A+  
Sbjct: 856  LVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKL 915

Query: 572  GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLK 626
            GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL+
Sbjct: 916  GLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMRDLE 975

Query: 627  QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R  G +LG +Q G    +     L   LLE A ++ K
Sbjct: 976  IRGAGNLLGAEQHGHINAIGYDLYL--KLLEEAIRNLK 1011


>gi|295096197|emb|CBK85287.1| transcription-repair coupling factor [Enterobacter cloacae subsp.
            cloacae NCTC 9394]
          Length = 1148

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WARARQKAAEKVRDVAAELLDIYAQRAAKEG--YAFKHDKEQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + LE+ + G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILEQASEGKIDILIGTHKLLQSDVKWKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   +R   L     + IA
Sbjct: 788  TFVREYDNL-VVREAILREVLRGGQVYYLYNDVE-----NIQKAADRLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEDQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|167920400|ref|ZP_02507491.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei
           BCC215]
          Length = 453

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 193/440 (43%), Positives = 273/440 (62%), Gaps = 12/440 (2%)

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
            +   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG Q
Sbjct: 16  CLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQ 75

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTH
Sbjct: 76  AALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTH 135

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRT 434
           A+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRT
Sbjct: 136 AMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRT 195

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE
Sbjct: 196 LAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEE 255

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEV
Sbjct: 256 SETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEV 315

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ 
Sbjct: 316 GVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRE 375

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++
Sbjct: 376 TTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEV 435

Query: 674 TSVRGQSIRILLYLYQYNEA 693
            +      R L    QY +A
Sbjct: 436 VAQ--HLARWLGAREQYLKA 453


>gi|331657177|ref|ZP_08358139.1| transcription-repair coupling factor [Escherichia coli TA206]
 gi|331055425|gb|EGI27434.1| transcription-repair coupling factor [Escherichia coli TA206]
          Length = 736

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 138 WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 195

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 196 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 255

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 256 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 315

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 316 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 375

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 376 TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 427

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 428 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 487

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 488 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 547

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 548 GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 596


>gi|167817316|ref|ZP_02448996.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei 91]
          Length = 444

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 193/439 (43%), Positives = 273/439 (62%), Gaps = 12/439 (2%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA
Sbjct: 8   LHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQA 67

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTHA
Sbjct: 68  ALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHA 127

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRTL 435
           + QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL
Sbjct: 128 MIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTL 187

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE 
Sbjct: 188 AMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEES 247

Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEVG
Sbjct: 248 ETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVG 307

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ T
Sbjct: 308 VDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRET 367

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++ 
Sbjct: 368 TDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVV 427

Query: 675 SVRGQSIRILLYLYQYNEA 693
           +      R L    QY +A
Sbjct: 428 AQ--HLARWLGAREQYLKA 444


>gi|167895798|ref|ZP_02483200.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei
           7894]
          Length = 441

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 193/443 (43%), Positives = 276/443 (62%), Gaps = 12/443 (2%)

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           ++ ++   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++A
Sbjct: 1   MSARLHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDA 60

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G QA +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++I
Sbjct: 61  GYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVI 120

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPI 431
           GTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPI
Sbjct: 121 GTHAMIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPI 180

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP 
Sbjct: 181 PRTLAMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPL 240

Query: 492 IEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           IEE +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTV
Sbjct: 241 IEESETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTV 300

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           IEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  
Sbjct: 301 IEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKT 360

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   
Sbjct: 361 MRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAH 420

Query: 671 PDLTSVRGQSIRILLYLYQYNEA 693
           P++ +      R L    QY +A
Sbjct: 421 PEVVAQ--HLARWLGAREQYLKA 441


>gi|237731096|ref|ZP_04561577.1| transcription-repair coupling factor [Citrobacter sp. 30_2]
 gi|226906635|gb|EEH92553.1| transcription-repair coupling factor [Citrobacter sp. 30_2]
          Length = 1148

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + LE++A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQADVKLKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   +R   L     + I 
Sbjct: 788  TFVREYDNL-VVREAILREVLRGGQVYYLFNDVE-----NIQKTADRLAELVPE--ARIG 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEDQSGSMESIGFS--LYMELLENAVDALKE--GREPSLEDLTSQQTEVELRM 1008


>gi|56413798|ref|YP_150873.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362721|ref|YP_002142358.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Paratyphi A str. AKU_12601]
 gi|56128055|gb|AAV77561.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
            subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094198|emb|CAR59702.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
            subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 1148

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|167847212|ref|ZP_02472720.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei
           B7210]
          Length = 442

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 193/439 (43%), Positives = 273/439 (62%), Gaps = 12/439 (2%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA
Sbjct: 6   LHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQA 65

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTHA
Sbjct: 66  ALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHA 125

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRTL 435
           + QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL
Sbjct: 126 MIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTL 185

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE 
Sbjct: 186 AMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEES 245

Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEVG
Sbjct: 246 ETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ T
Sbjct: 306 VDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRET 365

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++ 
Sbjct: 366 TDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVV 425

Query: 675 SVRGQSIRILLYLYQYNEA 693
           +      R L    QY +A
Sbjct: 426 AQ--HLARWLGAREQYLKA 442


>gi|300933877|ref|ZP_07149133.1| ATP-dependent DNA helicase [Corynebacterium resistens DSM 45100]
          Length = 734

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 203/735 (27%), Positives = 344/735 (46%), Gaps = 79/735 (10%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS-EERIVTITGYISQH 79
              +  L+       A      D + + P+ ++ R   P   ++  E  + T    ++  
Sbjct: 16  PDRARKLA-----DKAKLKTLTDAVTFFPNRYV-RASFPDAQDLMFEGEMFTCIARVNGV 69

Query: 80  SSF----QLQKRRPYKILLNDGTGEITLLF-FYRKTEMLKNVFFEGRKITVTGKIKKLKN 134
                      R+  ++ +   TG+  L F  +    + K     G  +   GK+   +N
Sbjct: 70  EERENHSGRGPRKYLRVQIT--TGDTPLSFAMFGNVHLHKRCLKPGNVLMFYGKLGLFRN 127

Query: 135 RIIMVHPHYIF----HNSQDVNFPLIE---------------------AVYSLPTGLSVD 169
           +  + +  Y+       S+   F  ++                       Y    G +  
Sbjct: 128 KWELKNVSYVSVFVHSESEFGAFGPLKTVVDIAGSERKAMEILNRPWLPFYPRRVGTTTA 187

Query: 170 LFKKIIVEALSRLPVLPEWIE---------KDLLQKKS--FPSIAEAFNIIHNPRKAKDF 218
               ++   L+ +    E +          +  + +        A A   IH P      
Sbjct: 188 EMLGVMDHVLACMGDPTEVLPSPRQGRDAPEWPVDEHGAPLLDFATALRQIHQPP----V 243

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQF--KKEIGIPINVEGKIAQKILRNIPFSPTKS 276
           E   PAR RL ++E L  Q+ + L R     +  + +P+       Q ++ ++PF  +  
Sbjct: 244 EGPEPARTRLKFNEALELQLVMALRRADATQRTAMKMPVGGTDSARQAVVDSLPFELSPG 303

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+ A  +I   +        +LQG+VGSGKT+VAL+AM  A+EAG Q   +AP  +LA Q
Sbjct: 304 QQRAGAEIAAALDSTTPASLLLQGEVGSGKTVVALLAMMQAIEAGYQCAFIAPTEVLAVQ 363

Query: 337 HYEF----IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           H       + +      + V ++TG+   A R+ AL  I  GQA I++GTHA+ Q+++++
Sbjct: 364 HARTLVGLLDRSDAGRSVGVTVLTGSQKTAERKAALLDIVSGQAQIVVGTHAVIQETVEF 423

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + L LVIVDEQHRFGV+QR +L   +     PH+++MTATPIPRT+ +T  GD+   ++ 
Sbjct: 424 FSLGLVIVDEQHRFGVRQRDQLRNNSPVDRTPHMMVMTATPIPRTVAMTMFGDLTPVRLP 483

Query: 450 EKPA-----GRKPIKTVIIPINR---IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             PA      R+ + T ++ +++   +  V ER +  L+ G++A+ + P+IE +      
Sbjct: 484 GLPAREGGEARRGVATNVVYLHKSAWVRRVWERCREELNAGRQAFIVAPKIEGEGGVLQT 543

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
                   L E+    + ++HG++   +K+ VM +F  G    L+ATT++EVG+DV +A+
Sbjct: 544 FEQLSHTELREY---RVGLLHGKLPPEEKDEVMRAFVAGDIDALVATTIVEVGVDVPNAT 600

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL-YHPPLSKNSYTRLSVLKNTEDGFLI 620
           ++II  A+ FG++QLHQLRGRVGRGE    C+LL     L   +  RL  +  T DGF +
Sbjct: 601 MMIILGADAFGVSQLHQLRGRVGRGEHAGLCLLLPSDENLPAVTRERLESVAMTSDGFEL 660

Query: 621 AEEDLKQRKEGEILGIKQSG--MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
           AE DLKQR EG++LG  QSG  + +  +      + ++  AR  A+ ++  D  L   R 
Sbjct: 661 AELDLKQRTEGDVLGADQSGSRVRRATLLDLTEDEFIINQARDYAEALVRYDEALA--RA 718

Query: 679 QSIRILLYLYQYNEA 693
             + I +    Y E 
Sbjct: 719 LVVDIEVEEQDYIER 733


>gi|204930833|ref|ZP_03221706.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Javiana str. GA_MM04042433]
 gi|204320292|gb|EDZ05496.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Javiana str. GA_MM04042433]
          Length = 1148

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|168467175|ref|ZP_02701017.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Newport str. SL317]
 gi|195630325|gb|EDX48951.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Newport str. SL317]
          Length = 1148

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++ + L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLHDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|213649271|ref|ZP_03379324.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 1130

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 532 WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 590 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 650 NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 710 VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 769

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 770 TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 821

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 822 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 881

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 882 RGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 941

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 942 GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 990


>gi|205353050|ref|YP_002226851.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Gallinarum str. 287/91]
 gi|205272831|emb|CAR37757.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
            subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628129|gb|EGE34472.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Gallinarum str. 9]
          Length = 1148

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +EI++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEILSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|56460626|ref|YP_155907.1| transcription-repair coupling factor [Idiomarina loihiensis L2TR]
 gi|56179636|gb|AAV82358.1| Transcription-repair coupling factor, superfamily II helicase
            [Idiomarina loihiensis L2TR]
          Length = 1160

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    +        +A ++  +  R++ K   G   N+  +  Q+     PF  T  Q++
Sbjct: 561  WDKAKKRAAEKVRDVAAELLDIYARREAK--PGYAFNINEEDYQRFAAGFPFEETIDQQT 618

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  + QDM Q   M R++ GDVG GKT VA+ A   AV  G Q +++ P  +LAQQHYE
Sbjct: 619  AIDAVKQDMQQPRAMDRLVCGDVGFGKTEVAMRAAFIAVNEGKQVMVLVPTTLLAQQHYE 678

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                   +  I VE+++        +  LE +++G+  I+IGTH L QD+++ + L L+I
Sbjct: 679  NFSDRFADQAIRVEVLSRFKTAKQSKGILEDLSNGKVDIVIGTHKLLQDNVKCHDLGLLI 738

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+  + +      +L +TATPIPRTL +      D+S I   PA R  +K
Sbjct: 739  VDEEHRFGVRQKDTIKRLRADVDILTLTATPIPRTLNMAMNNIRDLSIIATPPAKRLAVK 798

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    V E +   +  G + Y++   ++  +            +L     + + 
Sbjct: 799  TFVREYDE-PTVREAILREILRGGQVYFLHNNVDTIE-----KTAADIEALVPE--ARVV 850

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + D E +M  F +    +L+ TT+IE GID+  A+ II++ A+H GLAQ+HQL
Sbjct: 851  VAHGQMRERDLERIMSDFYHQRFNVLVCTTIIETGIDIPSANTIIMDRADHLGLAQMHQL 910

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++K+++ RL  +   ED   GF++A  DL+ R  GE+L
Sbjct: 911  RGRVGRSHHQAYAYLLTPHPKRMTKDAHKRLEAISQLEDLGAGFMLATHDLEIRGAGELL 970

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     L+  +LE A K  K    ++P L  +  +   I L L
Sbjct: 971  GDDQSGQIESI--GFTLYMDMLEQAVKALKE--GKEPALAQLLHERAEIDLKL 1019


>gi|283833508|ref|ZP_06353249.1| transcription-repair coupling factor [Citrobacter youngae ATCC 29220]
 gi|291071173|gb|EFE09282.1| transcription-repair coupling factor [Citrobacter youngae ATCC 29220]
          Length = 1148

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + LE++A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQADVKLKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   +R   L     + I 
Sbjct: 788  TFVREYDNL-VVREAILREVLRGGQVYYLFNDVE-----NIQKTADRLAELVPE--ARIG 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEDQSGSMESIGFS--LYMELLENAVDALKE--GREPSLEDLTSQQTEVELRM 1008


>gi|149192400|ref|ZP_01870600.1| transcription-repair coupling factor [Vibrio shilonii AK1]
 gi|148833765|gb|EDL50802.1| transcription-repair coupling factor [Vibrio shilonii AK1]
          Length = 702

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    R+       +A ++  +  +++ K   G   +++           PF  T  Q  
Sbjct: 102 WAKARRKAAEKVRDVAAELLDVYAKRELK--PGFKFSLDRDQYATFKAGFPFEETDDQAQ 159

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  ++ DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 160 AINAVMSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 219

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  I VE+++       ++  L+ +A G+  I++GTH L    IQ+  L L+I
Sbjct: 220 NFRDRFANLPIRVEVLSRFKSAKEQKAILQDVADGKVDIVVGTHKLLSSDIQFKDLGLLI 279

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 280 VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 339

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +    V E +   +  G + Y++  Q+E  +      V      L     + + 
Sbjct: 340 TFV-RQSEDSVVREAILREIMRGGQVYFLHNQVETIE-----KVAADLEKLVPE--ARVT 391

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A++ GLAQLHQL
Sbjct: 392 VAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQL 451

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 452 RGRVGRSHHQAYAYLLTPHPKAMTKDAVKRLDAIASLEDLGAGFTLATHDLEIRGAGELL 511

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G +QSG          L+  +LE A +  K    ++P L  +  +   + L +
Sbjct: 512 GDEQSGQI--QSVGFSLYMEMLEQAVEALKE--GKEPSLDDLLREQTEVELRI 560


>gi|283784907|ref|YP_003364772.1| transcription-repair coupling factor [Citrobacter rodentium ICC168]
 gi|282948361|emb|CBG87947.1| transcription-repair coupling factor [Citrobacter rodentium ICC168]
          Length = 1148

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + LE+ A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQSDVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +  V+R   L     + IA
Sbjct: 788  TFVREYDNL-VVREAILREILRGGQVYYLYNDVE-----NIQKAVDRLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEDQSGQMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|198242225|ref|YP_002215922.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Dublin str. CT_02021853]
 gi|197936741|gb|ACH74074.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Dublin str. CT_02021853]
 gi|326623670|gb|EGE30015.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Dublin str. 3246]
          Length = 1148

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|168239121|ref|ZP_02664179.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. SL480]
 gi|194738344|ref|YP_002114221.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. CVM19633]
 gi|194713846|gb|ACF93067.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. CVM19633]
 gi|197288100|gb|EDY27487.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. SL480]
          Length = 1148

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|168233095|ref|ZP_02658153.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Kentucky str. CDC 191]
 gi|194470858|ref|ZP_03076842.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Kentucky str. CVM29188]
 gi|194457222|gb|EDX46061.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Kentucky str. CVM29188]
 gi|205332729|gb|EDZ19493.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Kentucky str. CDC 191]
          Length = 1148

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|161614554|ref|YP_001588519.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Paratyphi B str. SPB7]
 gi|161363918|gb|ABX67686.1| hypothetical protein SPAB_02303 [Salmonella enterica subsp. enterica
            serovar Paratyphi B str. SPB7]
          Length = 1148

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|172087806|ref|YP_206418.2| transcription-repair coupling factor [Vibrio fischeri ES114]
 gi|197337336|ref|YP_002158058.1| transcription-repair coupling factor [Vibrio fischeri MJ11]
 gi|171902389|gb|AAW87530.2| transcription-repair coupling factor [Vibrio fischeri ES114]
 gi|197314588|gb|ACH64037.1| transcription-repair coupling factor [Vibrio fischeri MJ11]
          Length = 1151

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 172/584 (29%), Positives = 272/584 (46%), Gaps = 41/584 (7%)

Query: 120  GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
            G ++      ++ +          I  N  ++     + V  L  G+     + + ++ L
Sbjct: 454  GERVIQ----RRRRGDKQSASSDTIIRNLAELKIG--QPVVHLDHGIG----RYMGLQTL 503

Query: 180  SRLPVLPEWIEKDLLQK---------KSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLA 229
                +  E++  +   +          +  S   A      P  K     WT   R+   
Sbjct: 504  DVGDMPAEYMMLEYQDQAKLYVPVSSLNLISRYSAGADETAPIHKLGGEAWTKARRKAAE 563

Query: 230  YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
                +A ++  +  ++  K   G     + +       + PF  T  Q+ AI  +L DM 
Sbjct: 564  KVRDVAAELLDVYAKRAIK--PGFAFKQDREAYADFKASFPFEETHDQDIAINAVLSDMC 621

Query: 290  QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            Q   M R++ GDVG GKT VA+ A   A     Q  ++ P  +LAQQH+E  +    N  
Sbjct: 622  QAKAMDRLVCGDVGFGKTEVAMRAAFLATHNEKQVAVLVPTTLLAQQHFENFRDRFANFP 681

Query: 350  IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
            I VE+++       +++ L   A G+  I+IGTH L QDSI++  L L+IVDE+HRFGV+
Sbjct: 682  IRVEVLSRFKSAKEQKEILAATAEGKVDILIGTHKLLQDSIKFDDLGLLIVDEEHRFGVR 741

Query: 410  QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
            Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IKT +    + D
Sbjct: 742  QKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFV--REKAD 799

Query: 470  EVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
            +VI E +   +  G + Y +   ++       ++  E    L     + + + HG+M + 
Sbjct: 800  DVIKEAILREIKRGGQVYVLHNNVDTI-----QNAAEEIEKLIPE--ARVTLAHGQMRER 852

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            + E +M  F +    +L+ TT+IE GIDV  A+ II++ A+  GLAQLHQLRGRVGR   
Sbjct: 853  ELEKIMGDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADKLGLAQLHQLRGRVGRSHH 912

Query: 589  ISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK 643
             +   LL   P  LSK++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG   
Sbjct: 913  QAYAYLLTPHPKALSKDARKRLDAIASLEDLGAGFTLATHDLEIRGAGELLGDGQSGQI- 971

Query: 644  FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
                   L+  +LE A +  K    ++P L  +  +   + L L
Sbjct: 972  -QSVGFTLYMEMLEQAVEALKE--GKEPSLDDLLREQTEVELRL 1012


>gi|168822320|ref|ZP_02834320.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Weltevreden str. HI_N05-537]
 gi|205341236|gb|EDZ28000.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Weltevreden str. HI_N05-537]
 gi|320086344|emb|CBY96117.1| Transcription-repair-coupling factor TRCF; ATP-dependent helicase mfd
            [Salmonella enterica subsp. enterica serovar Weltevreden
            str. 2007-60-3289-1]
          Length = 1148

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|167912445|ref|ZP_02499536.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei 112]
          Length = 438

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 193/439 (43%), Positives = 273/439 (62%), Gaps = 12/439 (2%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA
Sbjct: 2   LHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQA 61

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTHA
Sbjct: 62  ALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHA 121

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRTL 435
           + QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL
Sbjct: 122 MIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTL 181

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE 
Sbjct: 182 AMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEES 241

Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEVG
Sbjct: 242 ETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVG 301

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ T
Sbjct: 302 VDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRET 361

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++ 
Sbjct: 362 TDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVV 421

Query: 675 SVRGQSIRILLYLYQYNEA 693
           +      R L    QY +A
Sbjct: 422 AQ--HLARWLGAREQYLKA 438


>gi|197265670|ref|ZP_03165744.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA23]
 gi|197243925|gb|EDY26545.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA23]
          Length = 1148

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|16764571|ref|NP_460186.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Typhimurium str. LT2]
 gi|62179736|ref|YP_216153.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Choleraesuis str. SC-B67]
 gi|167991999|ref|ZP_02573098.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168264274|ref|ZP_02686247.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Hadar str. RI_05P066]
 gi|194446626|ref|YP_002040470.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Newport str. SL254]
 gi|194449956|ref|YP_002045215.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Heidelberg str. SL476]
 gi|197250617|ref|YP_002146826.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Agona str. SL483]
 gi|224584278|ref|YP_002638076.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Paratyphi C strain RKS4594]
 gi|238910964|ref|ZP_04654801.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Tennessee str. CDC07-0191]
 gi|16419734|gb|AAL20145.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Typhimurium str. LT2]
 gi|62127369|gb|AAX65072.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Choleraesuis str. SC-B67]
 gi|194405289|gb|ACF65511.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Newport str. SL254]
 gi|194408260|gb|ACF68479.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Heidelberg str. SL476]
 gi|197214320|gb|ACH51717.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Agona str. SL483]
 gi|205329787|gb|EDZ16551.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205347253|gb|EDZ33884.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Hadar str. RI_05P066]
 gi|224468805|gb|ACN46635.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Paratyphi C strain RKS4594]
 gi|261246428|emb|CBG24237.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
            subsp. enterica serovar Typhimurium str. D23580]
 gi|267992993|gb|ACY87878.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Typhimurium str. 14028S]
 gi|301157757|emb|CBW17249.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
            subsp. enterica serovar Typhimurium str. SL1344]
 gi|312912204|dbj|BAJ36178.1| transcriptional repressor UlaR [Salmonella enterica subsp. enterica
            serovar Typhimurium str. T000240]
 gi|322714206|gb|EFZ05777.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Choleraesuis str. A50]
 gi|323129485|gb|ADX16915.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Typhimurium str. 4/74]
 gi|332988107|gb|AEF07090.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Typhimurium str. UK-1]
          Length = 1148

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|207857277|ref|YP_002243928.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Enteritidis str. P125109]
 gi|206709080|emb|CAR33413.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
            subsp. enterica serovar Enteritidis str. P125109]
          Length = 1148

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|161503691|ref|YP_001570803.1| transcription-repair coupling factor [Salmonella enterica subsp.
            arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865038|gb|ABX21661.1| hypothetical protein SARI_01775 [Salmonella enterica subsp. arizonae
            serovar 62:z4,z23:--]
          Length = 1148

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREHYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQAQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREVLRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|82777273|ref|YP_403622.1| transcription-repair coupling factor [Shigella dysenteriae Sd197]
 gi|309788186|ref|ZP_07682792.1| transcription-repair coupling factor [Shigella dysenteriae 1617]
 gi|81241421|gb|ABB62131.1| transcription-repair coupling factor [Shigella dysenteriae Sd197]
 gi|308924038|gb|EFP69539.1| transcription-repair coupling factor [Shigella dysenteriae 1617]
          Length = 1148

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        E +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHEREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++       ++L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVNILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL    + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEATASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|200390896|ref|ZP_03217507.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Virchow str. SL491]
 gi|199603341|gb|EDZ01887.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Virchow str. SL491]
          Length = 1148

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|213860062|ref|ZP_03385766.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 919

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 322 WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 379

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 380 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 439

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 440 NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 499

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 500 VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 559

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 560 TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 611

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 612 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 671

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 672 RGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 731

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 732 GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 780


>gi|119472828|ref|ZP_01614752.1| transcription-repair ATP-dependent coupling factor [Alteromonadales
            bacterium TW-7]
 gi|119444723|gb|EAW26029.1| transcription-repair ATP-dependent coupling factor [Alteromonadales
            bacterium TW-7]
          Length = 1157

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/481 (32%), Positives = 248/481 (51%), Gaps = 21/481 (4%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    +        +A ++  +  ++Q K        ++G+  ++   + PF 
Sbjct: 552  HKLGSDAWEKAKKRAAEKVRDVAAELLDIYAQRQAKPGN--KFTLDGQAYRQFSESFPFE 609

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI+ +L DM  K  M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +
Sbjct: 610  ETDDQRNAIEAVLGDMQSKQAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTL 669

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    +  I V +++       ++  LE +A+G+  I+IGTH L Q  I++
Sbjct: 670  LAQQHYENFKDRFADFPIEVGVLSRFNSTKEQKDTLENMANGKLDIVIGTHKLIQQDIKF 729

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   P
Sbjct: 730  NDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 789

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  +KT +   + ++ + E +   +  G + Y++   +E  +             L E
Sbjct: 790  AKRLAVKTFVRQRD-VELIREAILREIKRGGQVYFLHNNVETIE--------RVAQELSE 840

Query: 513  HFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +++   HG+M + + E +M  F +    +++ TT+IE GIDV  A+ II++ A+  
Sbjct: 841  WVPEANVITAHGQMREQELEQIMTQFYHQKYNVIVCTTIIETGIDVPTANTIIMDRADKL 900

Query: 572  GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GLAQLHQLRGRVGR    +   LL   P  LSK++  RL  +++ ED   GF +A  DL+
Sbjct: 901  GLAQLHQLRGRVGRSHHQAYAYLLTGDPKALSKDASKRLQAIESLEDLGAGFALATHDLE 960

Query: 627  QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             R  GE+LG  QSG  + +     L+  +LE A    +    ++P L ++  +   + L 
Sbjct: 961  IRGAGELLGDDQSGQMQTIGFS--LYMEMLEQAVNALRE--GKEPTLENLLQKQTEVDLK 1016

Query: 687  L 687
            L
Sbjct: 1017 L 1017


>gi|16760091|ref|NP_455708.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Typhi str. CT18]
 gi|29142138|ref|NP_805480.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Typhi str. Ty2]
 gi|213425039|ref|ZP_03357789.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Typhi str. E02-1180]
 gi|25290813|pir||AI0644 transcription-repair coupling factor (TrcF) STY1256 [imported] -
            Salmonella enterica subsp. enterica serovar Typhi (strain
            CT18)
 gi|16502385|emb|CAD08340.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
            subsp. enterica serovar Typhi]
 gi|29137767|gb|AAO69329.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Typhi str. Ty2]
          Length = 1148

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|322616592|gb|EFY13501.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 315996572]
 gi|322619893|gb|EFY16767.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 495297-1]
 gi|322622461|gb|EFY19306.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 495297-3]
 gi|322629421|gb|EFY26198.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 495297-4]
 gi|322633907|gb|EFY30645.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 515920-1]
 gi|322636838|gb|EFY33541.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 515920-2]
 gi|322641362|gb|EFY38001.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 531954]
 gi|322645127|gb|EFY41656.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652291|gb|EFY48647.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. OH_2009072675]
 gi|322655642|gb|EFY51944.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660947|gb|EFY57177.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 19N]
 gi|322665467|gb|EFY61655.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 81038-01]
 gi|322667556|gb|EFY63717.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673650|gb|EFY69752.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 414877]
 gi|322677576|gb|EFY73640.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 366867]
 gi|322679759|gb|EFY75798.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 413180]
 gi|322687232|gb|EFY83204.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 446600]
 gi|323194018|gb|EFZ79219.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 609458-1]
 gi|323199427|gb|EFZ84520.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 556150-1]
 gi|323208844|gb|EFZ93782.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 507440-20]
 gi|323210654|gb|EFZ95533.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 556152]
 gi|323217818|gb|EGA02533.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. MB101509-0077]
 gi|323228043|gb|EGA12184.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. MB110209-0055]
 gi|323229621|gb|EGA13744.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. MB111609-0052]
 gi|323232846|gb|EGA16942.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 2009083312]
 gi|323240118|gb|EGA24162.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 2009085258]
 gi|323242895|gb|EGA26916.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. 315731156]
 gi|323255555|gb|EGA39314.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. IA_2010008283]
 gi|323261591|gb|EGA45168.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. IA_2010008284]
 gi|323266985|gb|EGA50470.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. IA_2010008285]
 gi|323272089|gb|EGA55503.1| transcription-repair coupling factor [Salmonella enterica subsp.
            enterica serovar Montevideo str. IA_2010008287]
          Length = 1148

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILSEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|146311285|ref|YP_001176359.1| transcription-repair coupling factor [Enterobacter sp. 638]
 gi|145318161|gb|ABP60308.1| transcription-repair coupling factor [Enterobacter sp. 638]
          Length = 1148

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++       +A ++  +  ++  K   G     + +  Q    + PF  T  Q  
Sbjct: 550  WARARQKAAEKVRDVAAELLDIYAQRAAK--SGYAFKHDKEQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRATFLAVENNKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + LE+   G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILEQAREGKIDILIGTHKLLQSDVKWKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ++   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREVLRGGQVYYLFNDVE-----NIQKTADKLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ I+IE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIVIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   L+   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLMTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEDQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|167904186|ref|ZP_02491391.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei NCTC
           13177]
          Length = 443

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 193/439 (43%), Positives = 274/439 (62%), Gaps = 12/439 (2%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +   +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA
Sbjct: 7   LHAALPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQA 66

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTHA
Sbjct: 67  ALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHA 126

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRTL 435
           + QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL
Sbjct: 127 MIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTL 186

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE 
Sbjct: 187 AMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEES 246

Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           +    ++ VE + +L        + ++HGR++ ++K +VMD+F     +LL+ATTVIEVG
Sbjct: 247 ETLQLQTAVETYETLAAALPELKVGLVHGRLAPVEKAAVMDAFSRNDVQLLVATTVIEVG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ T
Sbjct: 307 VDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRET 366

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++ 
Sbjct: 367 TDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVV 426

Query: 675 SVRGQSIRILLYLYQYNEA 693
           +      R L    QY +A
Sbjct: 427 AQ--HLARWLGAREQYLKA 443


>gi|288549507|ref|ZP_06390702.1| transcription-repair coupling factor [Enterobacter cancerogenus
           ATCC 35316]
 gi|288318220|gb|EFC57158.1| transcription-repair coupling factor [Enterobacter cancerogenus
           ATCC 35316]
          Length = 992

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 394 WARARQKAAEKVRDVAAELLDIYAQRAAKEG--YAFKHDKEQYQLFCDSFPFETTPDQAQ 451

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQH++
Sbjct: 452 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLLAQQHFD 511

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  + +E+++       +   LE+ + G+  I+IGTH L Q  +++  L L+I
Sbjct: 512 NFRDRFANWPVRIEMLSRFRSAKEQTSILEQASEGKIDILIGTHKLLQSDVKWKDLGLLI 571

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 572 VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 631

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  V E +   +  G + Y++   +E     N +   +R   L     + IA
Sbjct: 632 TFVREYDNL-VVREAILREVLRGGQVYYLYNDVE-----NIQKAADRLAELVPE--ARIA 683

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 684 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 743

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 744 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 803

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G  QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 804 GEDQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 852


>gi|167586203|ref|ZP_02378591.1| ATP-dependent DNA helicase RecG [Burkholderia ubonensis Bu]
          Length = 450

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 194/445 (43%), Positives = 275/445 (61%), Gaps = 12/445 (2%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           G +  ++   +PF+ T +Q   + +I  D++  + M R+LQGDVGSGKT+VA +A A A+
Sbjct: 8   GALTTRLYAALPFTLTGAQARVVDEIAHDLTLPHPMQRLLQGDVGSGKTVVAALAAAQAI 67

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           +AG QA +MAP  ILA+QH   ++ + +   + V  + G++    +R A+E  A G A +
Sbjct: 68  DAGYQAALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKEKRAAIEAAALGTAQL 127

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTAT 429
           +IGTHA+ QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+AT
Sbjct: 128 VIGTHAIIQDAVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAQGFQPHQLMMSAT 187

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL +T   D+D+S I E P GR PI T ++   R +EVI R++     G++ YW+C
Sbjct: 188 PIPRTLAMTYYADLDVSTIDELPPGRTPILTRLVGDARREEVIARVREAALTGRQVYWVC 247

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P IEE +    ++ VE + +L        + ++HGR+S  DK +VMD+F     +LL+AT
Sbjct: 248 PLIEESETLQLQTAVETYETLVAALPELKVGLVHGRLSTADKAAVMDAFTRNEVQLLVAT 307

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PLS     RL
Sbjct: 308 TVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLLYSGPLSLAGRARL 367

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
             ++ T DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR+ A  ++ 
Sbjct: 368 KTMRETTDGFEIARRDLEIRGPGEFLGARQSGAAMLRFANLETDGWLIEPAREAAARLIA 427

Query: 669 QDPDLTSVRGQSIRILLYLYQYNEA 693
             PD+ +      R L    QY +A
Sbjct: 428 AYPDVVTQ--HLARWLGAREQYLKA 450


>gi|312883532|ref|ZP_07743257.1| transcription-repair coupling factor [Vibrio caribbenthicus ATCC
            BAA-2122]
 gi|309368755|gb|EFP96282.1| transcription-repair coupling factor [Vibrio caribbenthicus ATCC
            BAA-2122]
          Length = 1154

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 154/480 (32%), Positives = 243/480 (50%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W+   R+       +A ++  +  +++ K   G    ++           PF 
Sbjct: 547  HKLGSESWSKARRKAAEKVRDVAAELLDVYAKRELK--PGFQFQLDRGQYATFKAGFPFE 604

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q  AI  ++ DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +
Sbjct: 605  ETDDQAMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTL 664

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+E  +    N  I VE+++       +++ LE I  G+  +++GTH L  + I++
Sbjct: 665  LAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKRILEDIEAGKVDLVVGTHKLLSNDIKF 724

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   P
Sbjct: 725  KDLGLLIVDEEHRFGVRQKEKMKSMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 784

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E     +  G + Y++  Q+E  ++            L  
Sbjct: 785  ARRLAIKTFVRQKDDV-VVREAALREIMRGGQVYFLHNQVETIEKVAS-----ELEKLIP 838

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + +   HG+M + + E +M+ F +    LL+ TT+IE GIDV  A+ II++ A++ G
Sbjct: 839  E--ARVTFAHGQMRERELEQIMNDFYHQRYNLLVCTTIIETGIDVPTANTIIMDRADNLG 896

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A  DL+ 
Sbjct: 897  LAQLHQLRGRVGRSHHQAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAGFTLATHDLEI 956

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG          L+  +LE A +  K+   ++P L  +  +   I L +
Sbjct: 957  RGAGELLGDEQSGQI--QSVGFTLYMEMLEQAVEALKN--GKEPSLDDLLREQTEIELRI 1012


>gi|323222138|gb|EGA06523.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 1049

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 451 WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 508

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 509 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 568

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 569 NFRDRFANWPVRIEMLSRFRSAKEQTQILSEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 628

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 629 VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 688

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 689 TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 740

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 741 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 800

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 801 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 860

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 861 GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 909


>gi|332306962|ref|YP_004434813.1| transcription-repair coupling factor [Glaciecola agarilytica
            4H-3-7+YE-5]
 gi|332174291|gb|AEE23545.1| transcription-repair coupling factor [Glaciecola agarilytica
            4H-3-7+YE-5]
          Length = 1160

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 161/501 (32%), Positives = 250/501 (49%), Gaps = 24/501 (4%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
             L+ + S   + +A              W+   ++       +A Q+  +  R+  K   
Sbjct: 538  HLISRYSGGDLEKAPL-----HNLGTETWSKAKQKAAERVRDVAAQLLDVYARRAAKPGF 592

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               I  +    Q    + PF  T  Q+ AI  ++QDM   N M R++ GDVG GKT VA+
Sbjct: 593  SYKIAWD--EYQAFSDSFPFEETLDQQQAINAVIQDMGSSNAMDRLVCGDVGFGKTEVAM 650

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A   A   G Q  I+ P  +LAQQHYE  K    +    +E+++       ++  +  +
Sbjct: 651  RAAFIAANQGKQVAILVPTTLLAQQHYENFKDRFADWPFKIEVMSRFASAKDQKDVMAGL 710

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
              G+  I++GTH L Q  +++  L LVI+DE+HRFGV+Q+ K     +   +L +TATPI
Sbjct: 711  DDGKVDIVVGTHKLLQSDVKFDDLGLVIIDEEHRFGVRQKEKFKALRSDVDILTLTATPI 770

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            PRTL +   G  D+S I   PA R  IKT +   N+ + + E +   +  G + Y++  +
Sbjct: 771  PRTLNMALSGMRDLSIIATPPAKRLAIKTFVNQRNK-ELIREAIMREILRGGQVYFLHNE 829

Query: 492  IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +E  +    R+  E    + E   + IAI HG+M + + E VM  F +    +L+ TT+I
Sbjct: 830  VESIE----RTADEIAEIVPE---ARIAIGHGQMRERELEKVMGDFYHQRYNVLVCTTII 882

Query: 552  EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLS 609
            E GIDV  A+ II++ A+H GLAQLHQLRGRVGR    +   LL   P  ++K++  RL 
Sbjct: 883  ETGIDVPTANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAKKRLD 942

Query: 610  VLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
             + + ED   GF +A  DL+ R  GE+LG  Q+G          L+  +LE A +  K  
Sbjct: 943  AISSLEDLGAGFALATHDLEIRGAGELLGDDQTGQITT--VGFTLYMEMLEQAVESLKD- 999

Query: 667  LTQDPDLTSVRGQSIRILLYL 687
              ++P L +       I L +
Sbjct: 1000 -GKEPSLDAALANQTEIELRV 1019


>gi|170768251|ref|ZP_02902704.1| transcription-repair coupling factor [Escherichia albertii TW07627]
 gi|170123017|gb|EDS91948.1| transcription-repair coupling factor [Escherichia albertii TW07627]
          Length = 1148

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMISRFRSAKEQTQILTEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  D + R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDQEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|157146181|ref|YP_001453500.1| transcription-repair coupling factor [Citrobacter koseri ATCC
            BAA-895]
 gi|157083386|gb|ABV13064.1| hypothetical protein CKO_01937 [Citrobacter koseri ATCC BAA-895]
          Length = 1148

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + LE++A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQSDVKLKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   +R   L     + IA
Sbjct: 788  TFVREYDNL-VVREAILREVLRGGQVYYLYNDVE-----NIQKAADRLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEDQSGQMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|312871492|ref|ZP_07731586.1| putative ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF
           3008A-a]
 gi|311093012|gb|EFQ51362.1| putative ATP-dependent DNA helicase RecG [Lactobacillus iners LEAF
           3008A-a]
          Length = 453

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 165/453 (36%), Positives = 270/453 (59%), Gaps = 5/453 (1%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   RM R+LQG
Sbjct: 5   QLLYANDQKNSGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKRMNRLLQG 64

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   ++T +  
Sbjct: 65  DVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSSTK 124

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L  K   
Sbjct: 125 LNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGKM 184

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++  +   L 
Sbjct: 185 VDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQLE 244

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKN 539
           +G + Y + P I E  + + ++    +  +  +F +  +A++HG+M    K  +MD+F +
Sbjct: 245 QGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSDIMDAFIH 304

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S CI +  P 
Sbjct: 305 GSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGSTQSYCIFVSDPK 364

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            + ++  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     + ++   A
Sbjct: 365 -TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINNYNIFTTA 423

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           +K++K ++ Q+P+L       +++   L +Y++
Sbjct: 424 QKESKILVHQNPELVGEEYDFLKL---LMEYDD 453


>gi|167564023|ref|ZP_02356939.1| ATP-dependent DNA helicase RecG [Burkholderia oklahomensis EO147]
          Length = 450

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 194/439 (44%), Positives = 273/439 (62%), Gaps = 12/439 (2%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +   +PF  T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA
Sbjct: 14  LYAALPFRLTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQA 73

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +MAP  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTHA
Sbjct: 74  ALMAPTEILAEQHARKLRGWLEPLGVSVAWLAGSLKTKEKRAALEAAALGTAQLVIGTHA 133

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRTL 435
           + QD++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL
Sbjct: 134 MIQDTVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTL 193

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +T   D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE 
Sbjct: 194 AMTYYADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEES 253

Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           +    ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEVG
Sbjct: 254 ETLQLQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVG 313

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ T
Sbjct: 314 VDVPNASLMVIEHAERFGLAQLHQLRGRVGRGIAASVCVLIYSGPLSIAGRARLKTMRET 373

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            DGF IA  DL+ R  GE LG +QSG      A  E    L+E AR+ A  ++   PD+ 
Sbjct: 374 TDGFEIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPAREAAARLIAGYPDVV 433

Query: 675 SVRGQSIRILLYLYQYNEA 693
           +      R L    QY +A
Sbjct: 434 AQ--HLARWLGAREQYLKA 450


>gi|317047729|ref|YP_004115377.1| transcription-repair coupling factor [Pantoea sp. At-9b]
 gi|316949346|gb|ADU68821.1| transcription-repair coupling factor [Pantoea sp. At-9b]
          Length = 1147

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 164/496 (33%), Positives = 245/496 (49%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S        + P  K     W+   ++       +A ++  +  ++  K   G    
Sbjct: 527  HLISRYAGGADENAPLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAK--AGFAFK 584

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             +    Q      PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   
Sbjct: 585  HDRDQYQLFCEGFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AVE   Q  ++ P  +LAQQHY+  +    N  I +E+++       + + LE+ A G+ 
Sbjct: 645  AVENSKQVAVLVPTTLLAQQHYDNFRDRFANWPIRIEMLSRFRSAKEQNQVLEQAAEGKV 704

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L    ++++ L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL 
Sbjct: 705  DILIGTHKLLMSDLKWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLN 764

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   PA R  +KT +   + +  V E +   +  G + Y++   +E   
Sbjct: 765  MAMSGMRDLSIIATPPARRLAVKTFVREYDSL-VVREAILREVLRGGQVYYLYNDVE--- 820

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              N     +R   L     + IAI HG+M + D E VM+ F +    +L+ TT+IE GID
Sbjct: 821  --NIEKAAQRLAELVPE--ARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGID 876

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            V  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL   P  ++ ++  RL  + + 
Sbjct: 877  VPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 936

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG  QSG  + +     L+  LLE A    K    ++P
Sbjct: 937  EDLGAGFALATHDLEIRGAGELLGEDQSGQMETI--GFTLYMELLESAVDALKA--GREP 992

Query: 672  DLTSVRGQSIRILLYL 687
             L  +      I L +
Sbjct: 993  SLEDLTNNQTEIELRM 1008


>gi|157370240|ref|YP_001478229.1| transcription-repair coupling factor [Serratia proteamaculans 568]
 gi|157322004|gb|ABV41101.1| transcription-repair coupling factor [Serratia proteamaculans 568]
          Length = 1176

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G     + +  Q   +  PF  T  QE 
Sbjct: 577  WSRARQKAAERVRDVAAELLDIYAQRAAK--TGFAFKHDREQYQLFCQAFPFETTPDQEQ 634

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE G Q  ++ P  +LAQQH++
Sbjct: 635  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGKQVAVLVPTTLLAQQHFD 694

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       I +E+++       +++ ++    G+  IIIGTH L Q  +++  L L+I
Sbjct: 695  NFRDRFATWPIRIEMMSRFRSAKEQQQVMDDAVDGKVDIIIGTHKLLQSDLRWKDLGLLI 754

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 755  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 814

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N      +   L     + IA
Sbjct: 815  TFVREYDSL-VVREAILREVLRGGQVYYLYNDVE-----NIEKAAAKLAELVPE--ARIA 866

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+ FGLAQLHQL
Sbjct: 867  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADRFGLAQLHQL 926

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  +S +++ RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 927  RGRVGRSHHQAYAYLLTPPPKAMSTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELL 986

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  LLE A    K+   ++P L  +      + L +
Sbjct: 987  GEDQSGQMTT--VGFSLYMELLESAVDALKN--GREPSLEDLTSNQTEVELRM 1035


>gi|293396556|ref|ZP_06640832.1| transcription-repair coupling factor [Serratia odorifera DSM 4582]
 gi|291420820|gb|EFE94073.1| transcription-repair coupling factor [Serratia odorifera DSM 4582]
          Length = 1159

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 160/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT   ++       +A ++  +  ++  K   G     + +  Q   +  PF  T  QE 
Sbjct: 560  WTRARQKAAEKVRDVAAELLDIYAQRAAK--SGYAFKHDREQYQLFCQTFPFETTPDQEQ 617

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE G Q  ++ P  +LAQQH++
Sbjct: 618  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGKQVAVLVPTTLLAQQHFD 677

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       + +E+++       +++ L+  A G+  I+IGTH L Q  +++  L L+I
Sbjct: 678  NFRDRFATWPVRIEMMSRFRSAKEQQQVLDDAADGKVDIVIGTHKLLQSDLRWKDLGLLI 737

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 738  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 797

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N     +R   L     + IA
Sbjct: 798  TFVREYDSL-VVREAILREVLRGGQVYYLYNDVE-----NIDKAAQRLAELVPE--ARIA 849

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+ FGLAQLHQL
Sbjct: 850  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADRFGLAQLHQL 909

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  +S +++ RL  +   ED   GF +A  DL+ R  GE+L
Sbjct: 910  RGRVGRSHHQAYAYLLTPNPKAMSADAHKRLEAIATLEDLGAGFALATHDLEIRGAGELL 969

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     L+  LLE A    KH   ++P L  +      + L +
Sbjct: 970  GEDQSGQMTTIGFS--LYMELLESAVDALKH--GREPSLEDLTSSQTEVELRM 1018


>gi|167721134|ref|ZP_02404370.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei
           DM98]
 gi|167825726|ref|ZP_02457197.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei 9]
          Length = 433

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 193/435 (44%), Positives = 272/435 (62%), Gaps = 12/435 (2%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF+ T +QE  + +I  D++Q + M R+LQGDVGSGKT+VA +A A A++AG QA +MA
Sbjct: 1   MPFALTAAQERVVAEIAHDLTQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAALMA 60

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QH   ++ + +   + V  + G++    +R ALE  A G A ++IGTHA+ QD
Sbjct: 61  PTEILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHAMIQD 120

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---------APHVLLMTATPIPRTLVLTS 439
           ++++ +L LVIVDEQHRFGV+QRL L  KA           PH L+M+ATPIPRTL +T 
Sbjct: 121 TVEFARLGLVIVDEQHRFGVEQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTLAMTY 180

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D+D+S I E P GR PI T ++   R DEVI R++     G++ YW+CP IEE +   
Sbjct: 181 YADLDVSTIDELPPGRTPILTRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEESETLQ 240

Query: 500 FRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            ++ VE + +L        + ++HGR++  +K +VMD+F     +LL+ATTVIEVG+DV 
Sbjct: 241 LQTAVETYETLAAALPELKVGLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVGVDVP 300

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +AS+++IE+AE FGLAQLHQLRGRVGRG   S C+L+Y  PLS     RL  ++ T DGF
Sbjct: 301 NASLMVIEHAERFGLAQLHQLRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRETTDGF 360

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
            IA  DL+ R  GE LG +QSG      A  E    L+E AR  A  ++   P++ +   
Sbjct: 361 EIARRDLEIRGPGEFLGARQSGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVVAQ-- 418

Query: 679 QSIRILLYLYQYNEA 693
              R L    QY +A
Sbjct: 419 HLARWLGAREQYLKA 433


>gi|311279979|ref|YP_003942210.1| transcription-repair coupling factor [Enterobacter cloacae SCF1]
 gi|308749174|gb|ADO48926.1| transcription-repair coupling factor [Enterobacter cloacae SCF1]
          Length = 1148

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550  WARARQKAAEKVRDVAAELLDIYAQRAAKEG--YAFRHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       +   LE+ + G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQSLILEQASEGKIDILIGTHKLLQSDVKWKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N +   +R   L     + IA
Sbjct: 788  TFVREYDSL-VVREAMLREILRGGQVYYLYNDVE-----NIQKAADRLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEDQSGQMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTDVELRM 1008


>gi|303253501|ref|ZP_07339640.1| transcription-repair coupling factor [Actinobacillus pleuropneumoniae
            serovar 2 str. 4226]
 gi|307248372|ref|ZP_07530395.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae
            serovar 2 str. S1536]
 gi|302647611|gb|EFL77828.1| transcription-repair coupling factor [Actinobacillus pleuropneumoniae
            serovar 2 str. 4226]
 gi|306855110|gb|EFM87290.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae
            serovar 2 str. S1536]
          Length = 1149

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 248/480 (51%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    ++       +A ++  +  +++ +   G     +     +     PF 
Sbjct: 549  HKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQ--KGFAFAYDRDSFMQFSHTFPFE 606

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +
Sbjct: 607  ETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLVPTTL 666

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+ +Q+
Sbjct: 667  LAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQEDVQF 726

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I   P
Sbjct: 727  RDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVIASPP 786

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +    +        L  
Sbjct: 787  ARRLTIKTFVRQHDDL-IVKEAILREILRGGQVYYLHNDVATIENCATK-----LAELVP 840

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ IIIE A+ FG
Sbjct: 841  E--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFG 898

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  L+K++  RL  + + ++   GF++A  DL+ 
Sbjct: 899  LAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVLATHDLEI 958

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     +   LLE A K  +    ++P L  +    + I L +
Sbjct: 959  RGAGELLGAEQSGQIESIGFSLYMD--LLENAVKALQE--GREPTLEEITQNQVEIELRI 1014


>gi|297519880|ref|ZP_06938266.1| transcription-repair coupling factor [Escherichia coli OP50]
          Length = 612

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 14  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 71

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 72  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 131

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 132 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 191

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 192 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 251

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 252 TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 303

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 304 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 363

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 364 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 423

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G +QSG  + +     L+  LLE A    K    ++P L  +      + L +
Sbjct: 424 GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSHQTEVELRM 472


>gi|300716251|ref|YP_003741054.1| transcription-repair-coupling factor [Erwinia billingiae Eb661]
 gi|299062087|emb|CAX59203.1| Transcription-repair-coupling factor [Erwinia billingiae Eb661]
          Length = 1147

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 160/496 (32%), Positives = 248/496 (50%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S        + P  K     W+   ++       +A ++  +  +++ K   G    
Sbjct: 527  HLISRYAGGADENAPLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQREAK--SGFAFK 584

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             + +  Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   
Sbjct: 585  HDREQYQLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AVE   Q  ++ P  +LAQQHY+  +    N  + +E+++       +   LE+   G+ 
Sbjct: 645  AVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRTAKEQTAILEQAREGKI 704

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L  + I++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL 
Sbjct: 705  DILIGTHKLLANEIKWRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLN 764

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   PA R  +KT +   + +  V E +   +  G + Y++   +E   
Sbjct: 765  MAMSGMRDLSIIATPPARRLAVKTFVREFDDL-VVREAILREVLRGGQVYYLYNDVE--- 820

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              N      R + L     + +AI HG+M + + E VM+ F +    +L+ TT+IE GID
Sbjct: 821  --NIEKAANRLSELVPE--ARVAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 876

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ IIIE A+HFGLAQLHQLRGRVGR    +   L+   P  ++ +++ RL  L + 
Sbjct: 877  IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLMTPHPKAMTSDAHKRLEALASL 936

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG  QSG  + +     L+  LLE A +  K    ++P
Sbjct: 937  EDLGAGFALATHDLEIRGAGELLGEGQSGQMETIGFS--LYMELLENAVEALKE--GREP 992

Query: 672  DLTSVRGQSIRILLYL 687
             L  +      I L +
Sbjct: 993  SLEDLTNSQTDIELRM 1008


>gi|269792872|ref|YP_003317776.1| helicase domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100507|gb|ACZ19494.1| helicase domain protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 626

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 190/642 (29%), Positives = 303/642 (47%), Gaps = 36/642 (5%)

Query: 43  DLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEIT 102
           DLL + P  + D       +E    R   + G   + S    ++   Y +    G G   
Sbjct: 3   DLLLFLPRRYEDLRRPVTPAEALPGRRCLVEGSAGRPSPMMGRRGMRYPVT---GGGGTM 59

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
            +F +    M+      G ++ + G ++       M +P     +        I  VY  
Sbjct: 60  WVFVFGPRPMVPQ---PGERVLLYGPVRTSPLGPCMANP--KLLDRSSPLLGRIVPVYPS 114

Query: 163 PTGLSVDLFKKIIVEALSRLPVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
              L     + +I+ AL R    P  + I +++  ++S P +  +   IH P     +  
Sbjct: 115 SRALPSWWMRNLILSALERTSQDPPEDPIPEEIRFRRSLPDLVGSLREIHWPSSGASWRE 174

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
               R RLAY ELL  Q    L R+                 ++   ++PF PT+SQES 
Sbjct: 175 A---RRRLAYQELLLLQACFALRRRMRPLGAAPAAPAREADVEEYASSLPFRPTRSQESC 231

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           ++ I Q  ++    L +LQGDVGSGKT VAL A    ++ G   + ++P  ILA+Q ++ 
Sbjct: 232 MRAIAQAFNRGRFDL-LLQGDVGSGKTAVALFAAHLYLKRGRSVLFLSPTEILARQTFQV 290

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            ++   +    VE++TG+             A     + +GT AL           L IV
Sbjct: 291 ARRLLPDF--KVELVTGDT---------RADASPGPGLYVGTSALLFRKALGEASALAIV 339

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DEQ RFGV QR  LT+      +L+++ATPIPRT+ L   GD+++  + E P GR  + T
Sbjct: 340 DEQQRFGVSQRAALTRGGRMS-LLMVSATPIPRTMALALYGDLEVLTLGESPPGRGRVTT 398

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           + +    +  V++RL   L  G +A+W+CP +E    +      +   SL     ++  +
Sbjct: 399 MSMGPRGLGRVLDRLVGELERGGRAFWVCPSLEAGPSAAVSRHRQLCESL---GWANPQL 455

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGRM   +KE+ +  F+ G+ +LL+ TTV+EVGIDV DA+++++E A+  GL+QLHQLR
Sbjct: 456 VHGRMPSEEKEAAVLRFREGSSRLLVGTTVLEVGIDVPDATVMVVEGADMLGLSQLHQLR 515

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG     C+LL           RL  L+   DGF +AE DL +R  G +  + Q G
Sbjct: 516 GRVGRGGSDGLCVLLSSRE---PVPQRLKALEELSDGFKVAELDLAERGPGTLHHLSQHG 572

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
                +A       LLE AR+DA  ++ +     ++ G+ +R
Sbjct: 573 DMGLKVADLSRDLELLEAAREDAASLVEEW----AIHGELLR 610


>gi|109898045|ref|YP_661300.1| transcription-repair coupling factor [Pseudoalteromonas atlantica
            T6c]
 gi|109700326|gb|ABG40246.1| transcription-repair coupling factor [Pseudoalteromonas atlantica
            T6c]
          Length = 1160

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 160/501 (31%), Positives = 250/501 (49%), Gaps = 24/501 (4%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
             L+ + S   + +A              W+   ++       +A Q+  +  R+  K   
Sbjct: 538  HLISRYSGGDLEKAPL-----HNLGTETWSKAKQKAAERVRDVAAQLLDVYARRAAKPGY 592

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               I  +    Q    + PF  T  Q+ AI  ++QDM   N M R++ GDVG GKT VA+
Sbjct: 593  SYKIAWD--EYQAFSDSFPFEETLDQQQAINAVIQDMGSSNAMDRLVCGDVGFGKTEVAM 650

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A   A   G Q  I+ P  +LAQQHYE  K    +    +E+++       ++  +  +
Sbjct: 651  RAAFIAANQGKQVAILVPTTLLAQQHYENFKDRFADWPFKIEVMSRFGSAKDQKGVMAGL 710

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
              G+  I++GTH L Q  +++  L LVI+DE+HRFGV+Q+ K     +   +L +TATPI
Sbjct: 711  DDGKVDIVVGTHKLLQSDVKFDDLGLVIIDEEHRFGVRQKEKFKALRSDVDILTLTATPI 770

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            PRTL +   G  D+S I   PA R  IKT +   ++ + + E +   +  G + Y++  +
Sbjct: 771  PRTLNMALSGMRDLSIIATPPAKRLAIKTFVNQRSK-ELIREAIMREILRGGQVYFLHNE 829

Query: 492  IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            ++  +    R+  E    + E   + IAI HG+M + + E VM  F +    +L+ TT+I
Sbjct: 830  VDSIE----RTADEIAEMVPE---ARIAIGHGQMRERELEKVMGDFYHQRHNVLVCTTII 882

Query: 552  EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLS 609
            E GIDV  A+ II++ A+H GLAQLHQLRGRVGR    +   LL   P  ++K++  RL 
Sbjct: 883  ETGIDVPSANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAKKRLD 942

Query: 610  VLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
             + + ED   GF +A  DL+ R  GE+LG  Q+G          L+  +LE A +  K  
Sbjct: 943  AISSLEDLGAGFALATHDLEIRGAGELLGDDQTGQITT--VGFTLYMEMLEQAVEALKE- 999

Query: 667  LTQDPDLTSVRGQSIRILLYL 687
              ++P L +       I L L
Sbjct: 1000 -GKEPSLDTALANQTEIELRL 1019


>gi|213026773|ref|ZP_03341220.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 503

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 156/460 (33%), Positives = 238/460 (51%), Gaps = 19/460 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 57  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 114

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 115 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 174

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 175 NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 234

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 235 VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 294

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 295 TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 346

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 347 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 406

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 407 RGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 466

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           G +QSG  + +     L+  LLE A    K    ++P L 
Sbjct: 467 GEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLE 502


>gi|270159982|ref|ZP_06188638.1| transcription-repair coupling factor [Legionella longbeachae D-4968]
 gi|289165275|ref|YP_003455413.1| Transcription-repair coupling factor [Legionella longbeachae NSW150]
 gi|269988321|gb|EEZ94576.1| transcription-repair coupling factor [Legionella longbeachae D-4968]
 gi|288858448|emb|CBJ12326.1| Transcription-repair coupling factor [Legionella longbeachae NSW150]
          Length = 1146

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 160/496 (32%), Positives = 244/496 (49%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     +  H P  K    +W    ++       +A ++  L  +++ +        
Sbjct: 529  HLISRYTGVDSEHAPLHKLGSDQWQREKKKAAEKIHDVAIELLDLYAKREAQPGHQY--Q 586

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            V+     K     PF+ T  Q +AI+ I++DM     M R++ GDVG GKT VA+ A   
Sbjct: 587  VDHSDYAKFASGFPFTETPDQLNAIEQIIKDMESSKPMDRLICGDVGFGKTEVAMRAAFV 646

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AV++  Q  ++ P  +LA QH+E  +    +  I +E+++           L  +  G  
Sbjct: 647  AVQSNKQVCVLVPTTLLAGQHFESFRDRFADFPINIELLSRFRSNKESEAVLAGLKSGTV 706

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH LFQ SI +  L L+I+DE+HRFGV+Q+  +    T   +L MTATPIPRTL 
Sbjct: 707  DIVIGTHKLFQSSIAFKNLGLLIIDEEHRFGVKQKEHIKALRTHVDILSMTATPIPRTLN 766

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  DIS +T  PA R  IKT      +   V E +   +  G + +++   +E  +
Sbjct: 767  MAMAGIRDISLMTTPPAKRLAIKTFW-QEKKDPIVREAILREILRGGQVFFLHNNVETIE 825

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                  + E   SL     + I   HG+M + + E VM  F +    +L+ TT+IE GID
Sbjct: 826  -----RICEDLQSLVPE--AKIRSAHGQMRERELERVMSDFYHHRFNVLVCTTIIETGID 878

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT 614
            +  A+ III+ A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RL  + + 
Sbjct: 879  IPTANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNQKSLTSDAVKRLEAIVSL 938

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG +QSG    +     L   +L+ A  D K    + P
Sbjct: 939  EDLGAGFTLATHDLEIRGAGELLGEEQSGNMHAIGFN--LFMEMLDRAVNDLKA--GKIP 994

Query: 672  DLTSVRGQSIRILLYL 687
            +L++   Q   I L +
Sbjct: 995  ELSAPMYQGPEIDLRI 1010


>gi|197284762|ref|YP_002150634.1| transcription-repair coupling factor [Proteus mirabilis HI4320]
 gi|194682249|emb|CAR41979.1| transcription-repair coupling factor [Proteus mirabilis HI4320]
          Length = 1151

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/473 (34%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT   ++       +A ++  +  ++  K   G    ++ +      ++ PF  T  QE 
Sbjct: 549  WTRARQKAAEKVRDVAAELLDVYAQRAVK--SGFAFKLDKEQYHTFRQSFPFETTPDQEM 606

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A+    Q  I+ P  +LAQQH+E
Sbjct: 607  AINAVLSDMCQAIAMDRLVCGDVGFGKTEVAMRAAFLAISNNKQVAILVPTTLLAQQHFE 666

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       +++  E++A G   I+IGTH L Q  IQ+  L L+I
Sbjct: 667  NFRDRFANWPVNIEMISRFRSAKEQQQITEKLAEGTIDIVIGTHKLLQPGIQWKDLGLLI 726

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 727  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLSVK 786

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +      G + Y++   +E     N     +R   L     + I 
Sbjct: 787  TFVREYDDL-VVREAILRETLRGGQVYYLYNDVE-----NIEKARDRLAQLVPE--ARIG 838

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 839  IGHGQMRERELERVMNDFHHQRFNVLLCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 898

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++K+++ RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 899  RGRVGRSHHQAYAYLLTPHPKAMTKDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELL 958

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  LLE A +  K    ++P L  +  Q   I L +
Sbjct: 959  GEEQSGQMNT--VGFSLYMELLESAVEALKE--GREPSLEDLTNQQTEIELRM 1007


>gi|303250575|ref|ZP_07336772.1| transcription repair coupling factor [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|307252980|ref|ZP_07534867.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|302650563|gb|EFL80722.1| transcription repair coupling factor [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|306859509|gb|EFM91535.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
          Length = 1149

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 157/480 (32%), Positives = 247/480 (51%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    ++       +A ++  +  +++ +   G     +     +     PF 
Sbjct: 549  HKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQ--KGFAFAYDRDSFMQFSHTFPFE 606

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +
Sbjct: 607  ETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLVPTTL 666

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+ +Q+
Sbjct: 667  LAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQEDVQF 726

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +      D+S I   P
Sbjct: 727  RDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNSMRDLSVIASPP 786

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +    +        L  
Sbjct: 787  ARRLTIKTFVRQHDDL-IVKEAILREILRGGQVYYLHNDVATIENCATK-----LAELVP 840

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ IIIE A+ FG
Sbjct: 841  E--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFG 898

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  L+K++  RL  + + ++   GF++A  DL+ 
Sbjct: 899  LAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVLATHDLEI 958

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     +   LLE A K  +    ++P L  +    + I L +
Sbjct: 959  RGAGELLGAEQSGQIESIGFSLYMD--LLENAVKALQE--GREPTLEEITQNQVDIELRI 1014


>gi|307250599|ref|ZP_07532540.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae
            serovar 4 str. M62]
 gi|306857340|gb|EFM89455.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae
            serovar 4 str. M62]
          Length = 1149

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 248/480 (51%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    ++       +A ++  +  +++ +   G     +     +     PF 
Sbjct: 549  HKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQ--KGFAFAYDRDSFMQFSHTFPFE 606

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +
Sbjct: 607  ETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLVPTTL 666

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+ +Q+
Sbjct: 667  LAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQEDVQF 726

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I   P
Sbjct: 727  RDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVIASPP 786

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +    +        L  
Sbjct: 787  ARRLTIKTFVRQHDDL-IVKEAILREILRGGQVYYLHNDVATIENCATK-----LAELVP 840

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ IIIE A+ FG
Sbjct: 841  E--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFG 898

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  L+K++  RL  + + ++   GF++A  DL+ 
Sbjct: 899  LAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVLATHDLEI 958

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     +   LLE A K  +    ++P L  +    + I L +
Sbjct: 959  RGAGELLGAEQSGQIESIGFSLYMD--LLENAVKALQE--GREPTLEEITQNQVDIELRI 1014


>gi|307246259|ref|ZP_07528340.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae
            serovar 1 str. 4074]
 gi|307255243|ref|ZP_07537058.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae
            serovar 9 str. CVJ13261]
 gi|307259678|ref|ZP_07541401.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae
            serovar 11 str. 56153]
 gi|306852868|gb|EFM85092.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae
            serovar 1 str. 4074]
 gi|306861792|gb|EFM93771.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae
            serovar 9 str. CVJ13261]
 gi|306866218|gb|EFM98083.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae
            serovar 11 str. 56153]
          Length = 1149

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 248/480 (51%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    ++       +A ++  +  +++ +   G     +     +     PF 
Sbjct: 549  HKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQ--KGFAFAYDRDSFMQFSHTFPFE 606

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +
Sbjct: 607  ETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLVPTTL 666

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+ +Q+
Sbjct: 667  LAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQEDVQF 726

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I   P
Sbjct: 727  RDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVIASPP 786

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +    +        L  
Sbjct: 787  ARRLTIKTFVRQHDDL-IVKEAILREILRGGQVYYLHNDVATIENCATK-----LAELVP 840

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ IIIE A+ FG
Sbjct: 841  E--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFG 898

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  L+K++  RL  + + ++   GF++A  DL+ 
Sbjct: 899  LAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVLATHDLEI 958

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     +   LLE A K  +    ++P L  +    + I L +
Sbjct: 959  RGAGELLGAEQSGQIESIGFSLYMD--LLENAVKALQE--GREPTLEEITQNQVDIELRI 1014


>gi|165976764|ref|YP_001652357.1| transcription repair coupling factor [Actinobacillus pleuropneumoniae
            serovar 3 str. JL03]
 gi|165876865|gb|ABY69913.1| transcription repair coupling factor [Actinobacillus pleuropneumoniae
            serovar 3 str. JL03]
          Length = 1149

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 248/480 (51%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    ++       +A ++  +  +++ +   G     +     +     PF 
Sbjct: 549  HKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQ--KGFAFAYDRDSFMQFSHTFPFE 606

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +
Sbjct: 607  ETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLVPTTL 666

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+ +Q+
Sbjct: 667  LAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQEDVQF 726

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I   P
Sbjct: 727  RDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVIASPP 786

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +    +        L  
Sbjct: 787  ARRLTIKTFVRQHDDL-IVKEAILREILRGGQVYYLHNDVATIENCATK-----LAELVP 840

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ IIIE A+ FG
Sbjct: 841  E--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFG 898

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  L+K++  RL  + + ++   GF++A  DL+ 
Sbjct: 899  LAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVLATHDLEI 958

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     +   LLE A K  +    ++P L  +    + I L +
Sbjct: 959  RGAGELLGAEQSGQIESIGFSLYMD--LLENAVKALQE--GREPTLEEITQNQVDIELRI 1014


>gi|209809474|ref|YP_002265012.1| transcription-repair coupling factor [Aliivibrio salmonicida LFI1238]
 gi|208011036|emb|CAQ81450.1| transcription-repair coupling factor [Aliivibrio salmonicida LFI1238]
          Length = 1151

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 166/497 (33%), Positives = 249/497 (50%), Gaps = 22/497 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
            +  S   A      P  K     W    R+       +A ++  +  ++  K  +G    
Sbjct: 531  NLISRYSAGADDSAPISKLGSDAWGKARRKAAEKVRDVAAELLDVYAKRAIK--LGFAFK 588

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             + +       + PF  T  QE AI D+L DM Q   M R++ GDVG GKT VA+ A   
Sbjct: 589  QDKEAYADFRSSFPFEETHDQEIAINDVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFL 648

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A     Q  ++ P  +LAQQH+E  +    N  I VE+++       +++ L   A G+ 
Sbjct: 649  ATNNEKQVAVLVPTTLLAQQHFENFRDRFANFPIRVEVLSRFKSAKEQKEILAATAEGKV 708

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L QDSI++  L L++VDE+HRFGV+Q+ K+    +   +L +TATPIPRTL 
Sbjct: 709  DILIGTHKLLQDSIKFDDLGLLVVDEEHRFGVRQKEKVKAMRSDVDILTLTATPIPRTLN 768

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEK 495
            +   G  D+S I   PA R  IKT +    + D+VI E +   +  G + Y +   +E  
Sbjct: 769  MAMSGMRDLSIIATPPARRLAIKTFV--REKADDVIKEAILREIKRGGQVYVLHNNVETI 826

Query: 496  KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            +     S  +   +L     + + + HG+M + + E +M  F +    +L+ TT+IE GI
Sbjct: 827  E-----SAAKDIENLIPE--ARVTLAHGQMRERELERIMGDFYHQRFNVLVCTTIIETGI 879

Query: 556  DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN 613
            DV  A+ II+E A+  GLAQLHQLRGRVGR    +   LL   P  LSK++  RL  + +
Sbjct: 880  DVPTANTIIMERADKLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKALSKDAVKRLDAIAS 939

Query: 614  TED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
             ED   GF +A  DL+ R  GE+LG  QSG          L+  +LE A +  K    ++
Sbjct: 940  LEDLGAGFTLATHDLEIRGAGELLGDGQSGQI--QSVGFTLYMEMLEQAVEALKE--GKE 995

Query: 671  PDLTSVRGQSIRILLYL 687
            P L  +  +   + L L
Sbjct: 996  PSLDDLLREQTEVELRL 1012


>gi|227357767|ref|ZP_03842116.1| transcription-repair coupling factor [Proteus mirabilis ATCC 29906]
 gi|227162096|gb|EEI47110.1| transcription-repair coupling factor [Proteus mirabilis ATCC 29906]
          Length = 1151

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/473 (34%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT   ++       +A ++  +  ++  K   G    ++ +      ++ PF  T  QE 
Sbjct: 549  WTRARQKAAEKVRDVAAELLDVYAQRAVK--SGFAFKLDKEQYHTFRQSFPFETTPDQEM 606

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A+    Q  I+ P  +LAQQH+E
Sbjct: 607  AINAVLSDMCQAIAMDRLVCGDVGFGKTEVAMRAAFLAISNNKQVAILVPTTLLAQQHFE 666

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       +++  E++A G   I+IGTH L Q  IQ+  L L+I
Sbjct: 667  NFRDRFANWPVNIEMISRFRSAKEQQQITEKLAEGTIDIVIGTHKLLQPGIQWKDLGLLI 726

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 727  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLSVK 786

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +      G + Y++   +E     N     +R   L     + I 
Sbjct: 787  TFVREYDDL-VVREAILRETLRGGQVYYLYNDVE-----NIEKARDRLAQLVPE--ARIG 838

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 839  IGHGQMRERELERVMNDFHHQRFNVLLCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 898

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++K+++ RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 899  RGRVGRSHHQAYAYLLTPHPKAMTKDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELL 958

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  LLE A +  K    ++P L  +  Q   I L +
Sbjct: 959  GEEQSGQMNT--VGFSLYMELLESAVEALKE--GREPSLEDLTNQQTEIELRM 1007


>gi|291617056|ref|YP_003519798.1| Mfd [Pantoea ananatis LMG 20103]
 gi|291152086|gb|ADD76670.1| Mfd [Pantoea ananatis LMG 20103]
 gi|327393507|dbj|BAK10929.1| transcription-repair coupling factor Mfd [Pantoea ananatis AJ13355]
          Length = 1156

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/496 (32%), Positives = 247/496 (49%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S        + P  K     W+   ++       +A ++  +  ++  K   G    
Sbjct: 534  HLISRYAGGADENAPLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAK--SGYAFK 591

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             + +  Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   
Sbjct: 592  HDREQYQLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 651

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AVE   Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L+  + G+ 
Sbjct: 652  AVENNKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAREQNQILQEASEGKI 711

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L    I+++ L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL 
Sbjct: 712  DILIGTHKLLMSDIKWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLN 771

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   PA R  +KT +   + +  + E +   +  G + Y++   +E   
Sbjct: 772  MAMSGMRDLSIIATPPARRLAVKTFVREFDDL-VIREAILREILRGGQVYYLYNDVE--- 827

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              N     +R   L     + +AI HG+M + D E VM+ F +    +L+ TT+IE GID
Sbjct: 828  --NIEKAAQRLTELVPE--ARVAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGID 883

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL   P  ++ ++  RL  + + 
Sbjct: 884  IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 943

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG +QSG  + L     L+  LLE A    K    ++P
Sbjct: 944  EDLGAGFALATHDLEIRGAGELLGEEQSGQMETLGFS--LYMELLENAVDALKA--GREP 999

Query: 672  DLTSVRGQSIRILLYL 687
             L  +      + L +
Sbjct: 1000 SLEDLTSNQTEVELRM 1015


>gi|307257406|ref|ZP_07539175.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae
            serovar 10 str. D13039]
 gi|306864058|gb|EFM95972.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae
            serovar 10 str. D13039]
          Length = 1149

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 248/480 (51%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    ++       +A ++  +  +++ +   G     +     +     PF 
Sbjct: 549  HKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQ--KGFAFAYDRDSFMQFSHTFPFE 606

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +
Sbjct: 607  ETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLVPTTL 666

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+ +Q+
Sbjct: 667  LAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQEDVQF 726

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I   P
Sbjct: 727  RDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVIASPP 786

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +    +        L  
Sbjct: 787  ARRLTIKTFVRQHDDL-IVKEAILREILRGGQVYYLHNDVATIENCATK-----LAELVP 840

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ IIIE A+ FG
Sbjct: 841  E--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFG 898

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  L+K++  RL  + + ++   GF++A  DL+ 
Sbjct: 899  LAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVLATHDLEI 958

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     +   LLE A K  +    ++P L  +    + I L +
Sbjct: 959  RGAGELLGAEQSGQIESIGFSLYMD--LLENAVKALQE--GREPTLEEITQNQVDIELRI 1014


>gi|309809537|ref|ZP_07703395.1| putative ATP-dependent DNA helicase RecG [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170209|gb|EFO72244.1| putative ATP-dependent DNA helicase RecG [Lactobacillus iners SPIN
           2503V10-D]
          Length = 453

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 165/453 (36%), Positives = 270/453 (59%), Gaps = 5/453 (1%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   RM R+LQG
Sbjct: 5   QLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKRMNRLLQG 64

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   ++T +  
Sbjct: 65  DVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSSTK 124

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L  K   
Sbjct: 125 LNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGKM 184

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++  +   L 
Sbjct: 185 VDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQLE 244

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKN 539
           +G + Y + P I E  + + ++    +  +  +F +  +A++HG+M    K  +MD+F +
Sbjct: 245 QGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMGSSQKSDIMDAFIH 304

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+ K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S CI +  P 
Sbjct: 305 GSIKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYCIFVSDPK 364

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            + ++  RL ++   +DGF +A EDLK R EG+I G  QSG+P+F +     + ++   A
Sbjct: 365 -TDSAKKRLKIISTCDDGFALAREDLKLRGEGDIFGQAQSGIPQFKLGDIINNYNIFTTA 423

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           +K++K ++ Q+P+L       +++   L +Y++
Sbjct: 424 QKESKILVHQNPELVGEEYDFLKL---LMEYDD 453


>gi|307264008|ref|ZP_07545608.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae
            serovar 13 str. N273]
 gi|306870619|gb|EFN02363.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae
            serovar 13 str. N273]
          Length = 1149

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 248/480 (51%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    ++       +A ++  +  +++ +   G     +     +     PF 
Sbjct: 549  HKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQ--KGFAFAYDRDSFMQFSHTFPFE 606

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +
Sbjct: 607  ETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLVPTTL 666

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+ +Q+
Sbjct: 667  LAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQEDVQF 726

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I   P
Sbjct: 727  RDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVIASPP 786

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +    +        L  
Sbjct: 787  ARRLTIKTFVRQHDDL-IVKEAILREILRGGQVYYLHNDVATIENCATK-----LAELVP 840

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ IIIE A+ FG
Sbjct: 841  E--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFG 898

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  L+K++  RL  + + ++   GF++A  DL+ 
Sbjct: 899  LAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVLATHDLEI 958

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     +   LLE A K  +    ++P L  +    + I L +
Sbjct: 959  RGAGELLGAEQSGQIESIGFSLYMD--LLENAVKALQE--GREPTLEEITQNQVDIELRI 1014


>gi|307261826|ref|ZP_07543490.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae
            serovar 12 str. 1096]
 gi|306868443|gb|EFN00256.1| Transcription-repair-coupling factor [Actinobacillus pleuropneumoniae
            serovar 12 str. 1096]
          Length = 1149

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 248/480 (51%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    ++       +A ++  +  +++ +   G     +     +     PF 
Sbjct: 549  HKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQ--KGFAFAYDRDSFMQFSHTFPFE 606

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +
Sbjct: 607  ETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLVPTTL 666

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+ +Q+
Sbjct: 667  LAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQEDVQF 726

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I   P
Sbjct: 727  RDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVIASPP 786

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +    +        L  
Sbjct: 787  ARRLTIKTFVRQHDDL-IVKEAILREILRGGQVYYLHNDVATIENCATK-----LAELVP 840

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ IIIE A+ FG
Sbjct: 841  E--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFG 898

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  L+K++  RL  + + ++   GF++A  DL+ 
Sbjct: 899  LAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVLATHDLEI 958

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     +   LLE A K  +    ++P L  +    + I L +
Sbjct: 959  RGAGELLGAEQSGQIESIGFSLYMD--LLENAVKALQE--GREPTLEEITQNQVDIELRI 1014


>gi|323706238|ref|ZP_08117805.1| transcription-repair coupling factor [Thermoanaerobacterium
            xylanolyticum LX-11]
 gi|323534402|gb|EGB24186.1| transcription-repair coupling factor [Thermoanaerobacterium
            xylanolyticum LX-11]
          Length = 1166

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/556 (27%), Positives = 267/556 (48%), Gaps = 43/556 (7%)

Query: 127  GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP-TGLSVDLFKKIIVEALSRLPVL 185
            G+IK       +    Y+ H +        E +  +   G++ D  K  I  A      +
Sbjct: 492  GRIKNF---TELTVGSYVVHVNY--GIGKYEGIEKITVDGVTKDYLK--IKYAGDDKLFV 544

Query: 186  P-EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALL 241
            P E +  DL+QK   P           P K       +W+   +      E +A  +  L
Sbjct: 545  PVEQL--DLVQKYIGPEDK--------PPKLNKLGSSDWSKLKKRAKKAVEDIAKDLIKL 594

Query: 242  LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
              ++Q     G   + +    +      P+  T+ Q   I++I +DM     M R+L GD
Sbjct: 595  YAKRQ--TMKGYAFSKDTPWQKDFEEKFPYEETEDQLRCIEEIKKDMESDKPMDRLLCGD 652

Query: 302  VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            VG GKT VAL A   AV  G Q   + P  ILA+QHY    +  ++  + +E+++     
Sbjct: 653  VGYGKTEVALRAAFKAVADGKQVAFLCPTTILAEQHYNNFVQRFKDFPVKIEMLSRFRSN 712

Query: 362  AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
              + + ++ +A G   I++GTH + Q+ +++  L L+I+DE+ RFGV+ + K+ +     
Sbjct: 713  KEQSQIIKMVADGTVDILVGTHKILQNDVKFKDLGLLIIDEEQRFGVKHKEKIKKLKENI 772

Query: 422  HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             VL ++ATPIPRTL ++ +G  D+S +   P  R P++T ++  N  D + + +   L  
Sbjct: 773  DVLSLSATPIPRTLHMSLIGIRDMSVLENPPEDRYPVQTYVVEFNE-DLIRDAILRELGR 831

Query: 482  GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKN 539
            G + Y++  +I+          +ER  S+ +     + IA+ HG+M +   E +M  F N
Sbjct: 832  GGQVYFVYNRID---------GIERIASILKELVPEARIAVAHGQMDEGKLEDIMIGFLN 882

Query: 540  GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
                +L+ TT+IE G+D+ + + II+ +++  GL+QL+QLRGRVGR   ++     Y   
Sbjct: 883  REYDILVCTTIIETGLDIPNVNTIIVYDSDKMGLSQLYQLRGRVGRSNRLAYAYFTYRKD 942

Query: 600  --LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
              +S+ +  RL  +K       GF IA  DL+ R  G +LG +Q G    +     ++  
Sbjct: 943  KVISEVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHGHIDAVGYD--MYLR 1000

Query: 655  LLEIARKDAKHILTQD 670
            LL+ A K+ K +  +D
Sbjct: 1001 LLDEAIKNLKGVSEED 1016


>gi|53728955|ref|ZP_00134409.2| COG1197: Transcription-repair coupling factor (superfamily II
            helicase) [Actinobacillus pleuropneumoniae serovar 1 str.
            4074]
 gi|126208803|ref|YP_001054028.1| transcription-repair coupling factor [Actinobacillus pleuropneumoniae
            L20]
 gi|126097595|gb|ABN74423.1| transcription-repair coupling factor [Actinobacillus pleuropneumoniae
            serovar 5b str. L20]
          Length = 1149

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 248/480 (51%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    ++       +A ++  +  +++ +   G     +     +     PF 
Sbjct: 549  HKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQ--KGFAFAYDRDSFMQFSHTFPFE 606

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +
Sbjct: 607  ETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLVPTTL 666

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+ +Q+
Sbjct: 667  LAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQEDVQF 726

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I   P
Sbjct: 727  RDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSVIASPP 786

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +    +        L  
Sbjct: 787  ARRLTIKTFVRQHDDL-IVKEAILREILRGGQVYYLHNDVATIENCATK-----LAELVP 840

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ IIIE A+ FG
Sbjct: 841  E--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFG 898

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  L+K++  RL  + + ++   GF++A  DL+ 
Sbjct: 899  LAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVLATHDLEI 958

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     +   LLE A K  +    ++P L  +    + I L +
Sbjct: 959  RGAGELLGAEQSGQIESIGFSLYMD--LLENAVKALQE--GREPTLEEITQNQVDIELRI 1014


>gi|50120752|ref|YP_049919.1| transcription-repair coupling factor [Pectobacterium atrosepticum
            SCRI1043]
 gi|49611278|emb|CAG74725.1| transcription-repair coupling factor [Pectobacterium atrosepticum
            SCRI1043]
          Length = 1149

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 238/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G     +    Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAERVRDVAAELLDIYAQRAAK--SGFAFKHDKTQYQLFCESFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L+    G+  I+IGTH L Q  + ++ L L+I
Sbjct: 668  NFRDRFANWPVKIEMISRFRSAREQTQILKETQEGKVDILIGTHKLLQSDVHWHDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +      G + Y++   +E     N     +R   L     + IA
Sbjct: 788  TFVREYDNL-MVREAILRETLRGGQVYYLYNDVE-----NIEKATQRLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  +S ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAYLLTPPPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  LLE A    K    ++P L  +      + L L
Sbjct: 960  GDDQSGQMT--SVGFSLYMELLESAVDALKA--GREPSLEDLINSQTDVELRL 1008


>gi|329999583|ref|ZP_08303456.1| transcription-repair coupling factor [Klebsiella sp. MS 92-3]
 gi|328538286|gb|EGF64428.1| transcription-repair coupling factor [Klebsiella sp. MS 92-3]
          Length = 1126

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           WT   ++       +A ++  +  ++  K   G     + +  Q      PF  T  Q  
Sbjct: 528 WTRARQKAAEKVRDVAAELLDIYAQRAAK--AGFAFKHDREQYQLFCDGFPFETTPDQAQ 585

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 586 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 645

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  + +E+++       + + LE+ A G+  I+IGTH L Q  ++   L L+I
Sbjct: 646 NFRDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQSEVKLRDLGLLI 705

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 706 VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 765

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  V E +      G + Y++   +E     N +   ++   L     + IA
Sbjct: 766 TFVREYDAL-VVREAILRETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIA 817

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 818 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 877

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 878 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 937

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G  QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 938 GEDQSGQMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 986


>gi|161870155|ref|YP_001599325.1| transcription-repair coupling factor [Neisseria meningitidis 053442]
 gi|161595708|gb|ABX73368.1| transcription-repair coupling factor [Neisseria meningitidis 053442]
          Length = 1371

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 152/453 (33%), Positives = 238/453 (52%), Gaps = 17/453 (3%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  L  R+  +   G    +     Q       +  T+ Q +AI  +++D++Q   M R
Sbjct: 792  ELLNLYARRAAQ--SGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDR 849

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++
Sbjct: 850  LVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLS 909

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                    + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +
Sbjct: 910  RFNNSKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKR 969

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                  +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E + 
Sbjct: 970  LRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVL 1028

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              L  G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  
Sbjct: 1029 RELKRGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRD 1081

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F      +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL 
Sbjct: 1082 FLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLT 1141

Query: 597  HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
               ++K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+ 
Sbjct: 1142 PEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYT 1199

Query: 654  SLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             +L+ A +D K    + PDL +  G +  I L+
Sbjct: 1200 EMLKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1230


>gi|261822040|ref|YP_003260146.1| transcription-repair coupling factor [Pectobacterium wasabiae WPP163]
 gi|261606053|gb|ACX88539.1| transcription-repair coupling factor [Pectobacterium wasabiae WPP163]
          Length = 1150

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 237/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G     +    Q    + PF  T  Q  
Sbjct: 551  WSRARQKAAERVRDVAAELLDIYAQRAAK--SGFAFKHDKTQYQLFCESFPFETTPDQAQ 608

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQH++
Sbjct: 609  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFD 668

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + LE    G+  I+IGTH L Q  +++  L L+I
Sbjct: 669  NFRDRFANWPVKIEMISRFRSAREQTQILEETQEGKVDILIGTHKLLQSDVRWRDLGLLI 728

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 729  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 788

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +      G + Y++   +E     N     +R   L     + I 
Sbjct: 789  TFVREYDNL-MVREAILRETLRGGQVYYLYNDVE-----NIEKATQRLAELVPE--ARIT 840

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 841  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 900

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  +S ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 901  RGRVGRSHHQAYAYLLTPPPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 960

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  LLE A    K    ++P L  +      + L L
Sbjct: 961  GDDQSGQMT--SVGFSLYMELLESAVDALKA--GREPSLEDLINSQTDVELRL 1009


>gi|332993550|gb|AEF03605.1| transcription-repair coupling factor [Alteromonas sp. SN2]
          Length = 1172

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 152/473 (32%), Positives = 240/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  R+  K   G   N+E    QK   + PF  T  Q  
Sbjct: 575  WSKAKQKAAEKVRDVAAELLDVYARRAAK--PGFAYNIEWDEYQKFADSFPFEETPDQAQ 632

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  ++ DM   + M R++ GDVG GKT VA+ A   A   G Q  I+ P  +LAQQH+E
Sbjct: 633  AIAAVIHDMGSPHAMDRLVCGDVGFGKTEVAMRAAFLAANQGKQVAILVPTTLLAQQHHE 692

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K         +E+++  +    +++ ++R++ G+  I++GTH L  + I++  L L+I
Sbjct: 693  NFKDRFAAWPFEIEVMSRFISAKGQKETMQRLSEGKVDIVVGTHKLLSNDIKFKDLGLLI 752

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ KL        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 753  IDEEHRFGVRQKEKLKSLRADVDILTLTATPIPRTLNMAMSGMRDLSIIATAPARRLSIK 812

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   N+   + E +   +  G + Y++  +++           E    +     + IA
Sbjct: 813  TFVQQRNK-ATIREAIMREILRGGQVYFLHNEVDTIA-----RTAEEIAEIVPE--ARIA 864

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ TT+IE GIDV  A+ II++ A+H GLAQLHQL
Sbjct: 865  MGHGQMRERELEGVMSDFYHQRYNVLVCTTIIETGIDVPSANTIIMDRADHLGLAQLHQL 924

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++K++  RL  +   ED   GF +A  DL+ R  GE+L
Sbjct: 925  RGRVGRSHHQAYAYLLTPHPKRMTKDAAKRLDAISKLEDLGAGFALATHDLEIRGAGELL 984

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     +   +L+ A    K    ++P L         + L +
Sbjct: 985  GDDQSGQIASIGFSLYMD--MLDRAVTSLKE--GKEPSLDDAMAGHTEVELRI 1033


>gi|152969666|ref|YP_001334775.1| transcription-repair coupling factor [Klebsiella pneumoniae subsp.
            pneumoniae MGH 78578]
 gi|150954515|gb|ABR76545.1| transcription-repair ATP-dependent coupling factor [Klebsiella
            pneumoniae subsp. pneumoniae MGH 78578]
          Length = 1152

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT   ++       +A ++  +  ++  K   G     + +  Q      PF  T  Q  
Sbjct: 554  WTRARQKAAEKVRDVAAELLDIYAQRAAK--AGFAFKHDREQYQLFCDGFPFETTPDQAQ 611

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 612  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 671

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + LE+ A G+  I+IGTH L Q  ++   L L+I
Sbjct: 672  NFRDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQSEVKLRDLGLLI 731

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 732  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 791

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +      G + Y++   +E     N +   ++   L     + IA
Sbjct: 792  TFVREYDAL-VVREAILRETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIA 843

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 844  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 903

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 904  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 963

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 964  GEDQSGQMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1012


>gi|315126314|ref|YP_004068317.1| transcription-repair ATP-dependent coupling factor [Pseudoalteromonas
            sp. SM9913]
 gi|315014828|gb|ADT68166.1| transcription-repair ATP-dependent coupling factor [Pseudoalteromonas
            sp. SM9913]
          Length = 1157

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/481 (32%), Positives = 246/481 (51%), Gaps = 21/481 (4%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    +        +A ++  +  ++Q K        ++G+  ++   + PF 
Sbjct: 552  HKLGSDAWDKAKKRAAEKVRDVAAELLDIYAQRQAKPGN--KFTLDGQAYRQFSDSFPFE 609

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI+ +L DM  K  M R++ GDVG GKT VA+ A   AV    Q  I+ P  +
Sbjct: 610  ETDDQRNAIEAVLGDMQSKQAMDRLVCGDVGFGKTEVAMRAAFVAVNDNKQVAILVPTTL 669

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHY+  K    +  I V +++       +++ LE++++G+  ++IGTH L Q  I +
Sbjct: 670  LAQQHYDNFKDRFADFPIEVGVLSRFNSTKEQKETLEKMSNGKLDVVIGTHKLIQQDINF 729

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   P
Sbjct: 730  KDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 789

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  +KT +   +  + + E +   +  G + Y++   +E  +             + E
Sbjct: 790  AKRLAVKTFVRQRDE-ELIREAVLREIKRGGQVYFLHNNVETIE--------RVAQEISE 840

Query: 513  HFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                + +   HG+M + + E +M  F +    +L+ TT+IE GIDV  A+ II++ A+  
Sbjct: 841  WVPEATVTSAHGQMREQELEQIMTDFYHQKYNVLVCTTIIETGIDVPTANTIIMDRADKL 900

Query: 572  GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GLAQLHQLRGRVGR    +   LL   P  LSK++  RL  + + ED   GF +A  DL+
Sbjct: 901  GLAQLHQLRGRVGRSHHQAYAYLLTGNPKALSKDAKKRLDAIASLEDLGAGFALATHDLE 960

Query: 627  QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             R  GE+LG  QSG  + +     L+  +LE A    K+   Q+P L ++  +   + L 
Sbjct: 961  IRGAGELLGDDQSGQMQTIGFN--LYMEMLEQAVNALKN--GQEPTLENLLQKQTEVDLK 1016

Query: 687  L 687
            L
Sbjct: 1017 L 1017


>gi|290510825|ref|ZP_06550195.1| transcription-repair coupling factor [Klebsiella sp. 1_1_55]
 gi|289777541|gb|EFD85539.1| transcription-repair coupling factor [Klebsiella sp. 1_1_55]
          Length = 1148

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT   ++       +A ++  +  ++  K   G     + +  Q      PF  T  Q  
Sbjct: 550  WTRARQKAAEKVRDVAAELLDIYAQRAAK--AGFAFKHDREQYQLFCDGFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + LE+ A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQSEVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +      G + Y++   +E     N +   ++   L     + IA
Sbjct: 788  TFVREYDAL-VVREAILRETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEDQSGQMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|317491827|ref|ZP_07950262.1| transcription-repair coupling factor [Enterobacteriaceae bacterium
            9_2_54FAA]
 gi|316920261|gb|EFV41585.1| transcription-repair coupling factor [Enterobacteriaceae bacterium
            9_2_54FAA]
          Length = 1153

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 161/480 (33%), Positives = 244/480 (50%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     WT   ++       +A ++  +   +  K   G     + +  Q   ++ PF 
Sbjct: 549  HKLGSDAWTRARQKAAEKVRDVAAELLDIYAMRAAK--PGFAFKQDREAYQMFCQSFPFE 606

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 607  TTPDQSMAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVHNNKQVAVLVPTTL 666

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHY+  +    N  + +E+I+       + + L+  A G+  I+IGTH L Q  +Q+
Sbjct: 667  LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQVLQDAAEGKVDILIGTHKLLQADVQW 726

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+IVDE+HRFGV+Q+ ++        +L +TATPIPRTL +   G  D+S I   P
Sbjct: 727  RDLGLLIVDEEHRFGVRQKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 786

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  +KT +   + +  V E +   ++ G + Y++   +E  +++           L  
Sbjct: 787  ARRLAVKTFVREYDSL-VVREAILREVTRGGQVYYLYNDVENIEKAAQC-----LAELVP 840

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IAI HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFG
Sbjct: 841  E--ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFG 898

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  +S ++  RL  + + ED   GF +A  DL+ 
Sbjct: 899  LAQLHQLRGRVGRSFHQAYAYLLTPPPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEI 958

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG  QSG    +     L+  LLE A    K    ++P L  +      + L +
Sbjct: 959  RGAGELLGDDQSGQMTTIGFS--LYMELLESAVDALKE--GREPSLEDLTSNQTDVELRM 1014


>gi|28897749|ref|NP_797354.1| transcription-repair coupling factor [Vibrio parahaemolyticus RIMD
            2210633]
 gi|260363824|ref|ZP_05776579.1| transcription-repair coupling factor [Vibrio parahaemolyticus K5030]
 gi|260876916|ref|ZP_05889271.1| transcription-repair coupling factor [Vibrio parahaemolyticus
            AN-5034]
 gi|260897942|ref|ZP_05906438.1| transcription-repair coupling factor [Vibrio parahaemolyticus
            Peru-466]
 gi|260903477|ref|ZP_05911872.1| transcription-repair coupling factor [Vibrio parahaemolyticus AQ4037]
 gi|28805962|dbj|BAC59238.1| transcription-repair coupling factor [Vibrio parahaemolyticus RIMD
            2210633]
 gi|308085487|gb|EFO35182.1| transcription-repair coupling factor [Vibrio parahaemolyticus
            Peru-466]
 gi|308093632|gb|EFO43327.1| transcription-repair coupling factor [Vibrio parahaemolyticus
            AN-5034]
 gi|308110343|gb|EFO47883.1| transcription-repair coupling factor [Vibrio parahaemolyticus AQ4037]
 gi|308113858|gb|EFO51398.1| transcription-repair coupling factor [Vibrio parahaemolyticus K5030]
          Length = 1153

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/473 (32%), Positives = 239/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+       +A ++  +  +++ K   G    ++           PF  T  Q  
Sbjct: 553  WSKARRKAAEKVRDVAAELLDVYAKRELK--PGFKFALDRGQYATFKATFPFEETDDQAM 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A +   Q  ++ P  +LAQQH+E
Sbjct: 611  AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVPTTLLAQQHFE 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       ++  L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 671  NFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSDIKFKDLGLLI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 731  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +        V E +   +  G + Y++  Q+E  +        E    L     + I 
Sbjct: 791  TFVREREE-SVVREAVLREIMRGGQVYFLHNQVETIE-----KTAEDLQKLIPE--ARIT 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E +M+ F +    +L+ TT+IE GIDV  A+ II++ A++ GLAQLHQL
Sbjct: 843  VAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   + L +
Sbjct: 963  GDEQSGQI--QSVGFTLYMEMLEQAVEALKE--GKEPSLDDLLREQTEVELRI 1011


>gi|325578622|ref|ZP_08148722.1| transcription-repair coupling factor [Haemophilus parainfluenzae ATCC
            33392]
 gi|325159858|gb|EGC71988.1| transcription-repair coupling factor [Haemophilus parainfluenzae ATCC
            33392]
          Length = 1149

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/480 (33%), Positives = 252/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 548  HKLGNESWAKTRQKAAEKIRDVAAELLDVYAQREVK--KGFEFKYDREEFQQFAATFPFE 605

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q  AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 606  ETHDQAMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 665

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGTH L Q  +++
Sbjct: 666  LAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKF 725

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I   P
Sbjct: 726  SDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIIATPP 785

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  + E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 786  ARRVSIKTFVRQKDDL-IIREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVP 839

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + I HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A++FG
Sbjct: 840  E--ARVVIGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFG 897

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L++ ++   GF++A  DL+ 
Sbjct: 898  LAQLHQLRGRVGRSHHQAYAYLLTPPPKLMTKDAKRRLEALESLDNLGAGFILATHDLEI 957

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LL+ A K  K    ++P L  +  Q   I L +
Sbjct: 958  RGAGELLGNEQSGQIESIGFS--LYMELLDAAVKALKE--GREPSLEEITHQQAEIELRV 1013


>gi|226330514|ref|ZP_03806032.1| hypothetical protein PROPEN_04432 [Proteus penneri ATCC 35198]
 gi|225201309|gb|EEG83663.1| hypothetical protein PROPEN_04432 [Proteus penneri ATCC 35198]
          Length = 708

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/474 (35%), Positives = 248/474 (52%), Gaps = 18/474 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
             +  R R    E +    A LL +  Q + + G    ++ +  Q   ++ PF  T  QE
Sbjct: 105 GDAWVRARQKAAEKVRDVAAELLDVYAQREVKTGFAFKMDKEQYQTFRQSFPFETTPDQE 164

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    Q  I+ P  +LAQQH+
Sbjct: 165 MAINAVLSDMCQAISMDRLVCGDVGFGKTEVAMRAAFLAVNNNKQVAILVPTTLLAQQHF 224

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +  +    N  + +E+I+       +++  E++A G   I+IGTH L Q +IQ+  L L+
Sbjct: 225 DNFRDRFANWPVNIEMISRFRSAKEQQQITEKLAEGTIDIVIGTHKLLQPNIQWKDLGLL 284

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +
Sbjct: 285 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLSV 344

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           KT +   + +  V E +      G + Y++   +E     N     ER  +L     + I
Sbjct: 345 KTFVREYDDL-VVREAILRETLRGGQVYYLYNDVE-----NIEKARERLAALVPE--ARI 396

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQ
Sbjct: 397 GIGHGQMRERELERVMNDFHHQRFNVLLCTTIIETGIDIPSANTIIIERADHFGLAQLHQ 456

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGR    +   LL   P  ++K+++ RL  + + ED   GF +A  DL+ R  GE+
Sbjct: 457 LRGRVGRSHHQAYAYLLTPHPKAMTKDAHKRLEAIASLEDLGAGFALATHDLEIRGAGEL 516

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           LG +QSG          L+  LLE A +  K    ++P L  +  Q   I L +
Sbjct: 517 LGEEQSGQMNT--VGFSLYMELLESAVEALKE--GREPSLEDLTNQQTEIELRM 566


>gi|153837338|ref|ZP_01990005.1| transcription-repair coupling factor [Vibrio parahaemolyticus AQ3810]
 gi|149749369|gb|EDM60142.1| transcription-repair coupling factor [Vibrio parahaemolyticus AQ3810]
          Length = 1153

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/473 (32%), Positives = 239/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+       +A ++  +  +++ K   G    ++           PF  T  Q  
Sbjct: 553  WSKARRKAAEKVRDVAAELLDVYAKRELK--PGFKFALDRGQYATFKATFPFEETDDQAM 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A +   Q  ++ P  +LAQQH+E
Sbjct: 611  AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVPTTLLAQQHFE 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       ++  L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 671  NFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSDIKFKDLGLLI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 731  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +        V E +   +  G + Y++  Q+E  +        E    L     + I 
Sbjct: 791  TFVREREE-SVVREAVLREIMRGGQVYFLHNQVETIE-----KTAEDLQKLIPE--ARIT 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E +M+ F +    +L+ TT+IE GIDV  A+ II++ A++ GLAQLHQL
Sbjct: 843  VAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   + L +
Sbjct: 963  GDEQSGQI--QSVGFTLYMEMLEQAVEALKE--GKEPSLDDLLREQTEVELRI 1011


>gi|206576037|ref|YP_002239264.1| transcription-repair coupling factor [Klebsiella pneumoniae 342]
 gi|206565095|gb|ACI06871.1| transcription-repair coupling factor [Klebsiella pneumoniae 342]
          Length = 1148

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT   ++       +A ++  +  ++  K   G     + +  Q      PF  T  Q  
Sbjct: 550  WTRARQKAAEKVRDVAAELLDIYAQRAAK--AGFAFKHDREQYQLFCDGFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + LE+ A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQSEVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +      G + Y++   +E     N +   ++   L     + IA
Sbjct: 788  TFVREYDAL-VVREAILRETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEDQSGQMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|308186433|ref|YP_003930564.1| Transcription-repair-coupling factor [Pantoea vagans C9-1]
 gi|308056943|gb|ADO09115.1| Transcription-repair-coupling factor [Pantoea vagans C9-1]
          Length = 1154

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 247/480 (51%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W+   ++       +A ++  +  ++  K   G     + +  Q    + PF 
Sbjct: 550  HKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAK--TGFAFKHDREQYQLFCESFPFE 607

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +
Sbjct: 608  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL 667

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHY+  +    N  + +E+++       + + LE+ + G+  I+IGTH L    +++
Sbjct: 668  LAQQHYDNFRDRFANWPVRIEMLSRFRTAKEQAQVLEQASEGKIDILIGTHKLLMSDLKW 727

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            + L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   P
Sbjct: 728  HDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 787

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  +KT +   + +  + E +   +  G + Y++   +E     N     +R + L  
Sbjct: 788  ARRLAVKTFVREYDDL-VIREAILREVLRGGQVYYLYNDVE-----NIEKAAQRLSDLVP 841

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + +AI HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFG
Sbjct: 842  E--ARVAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 899

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL   P  ++ +++ RL  + + ED   GF +A  DL+ 
Sbjct: 900  LAQLHQLRGRVGRSHHQAYAWLLTPHPKSMTTDAHKRLEAIASLEDLGAGFALATHDLEI 959

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + L     L+  LLE A    K    ++P L  +      + L +
Sbjct: 960  RGAGELLGDEQSGQMETL--GFTLYMELLENAVDALKA--GREPSLEDLTSNQTEVELRM 1015


>gi|307131510|ref|YP_003883526.1| transcription-repair coupling factor [Dickeya dadantii 3937]
 gi|306529039|gb|ADM98969.1| transcription-repair coupling factor [Dickeya dadantii 3937]
          Length = 1149

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/473 (34%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT   ++       +A ++  L +  Q     G     + +  Q   +  PF  T  Q  
Sbjct: 550  WTRARQKAAEKVRDVAAEL--LDVYAQRAAHTGFAFKHDREQYQLFCQGFPFDTTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM +   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++    Q  + + LE+   G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVRWRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N     +R N L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIEKAAQRLNELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  +S +++ RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAYLLTPNPKAMSSDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  +       L+  LLE A +  K    ++P L  +      + L L
Sbjct: 960  GEDQSGQME--SVGFSLYMDLLESAVESLKA--GREPSLEDLISSQTDVELRL 1008


>gi|271500156|ref|YP_003333181.1| transcription-repair coupling factor [Dickeya dadantii Ech586]
 gi|270343711|gb|ACZ76476.1| transcription-repair coupling factor [Dickeya dadantii Ech586]
          Length = 1150

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 161/473 (34%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT   ++       +A ++  L +  Q     G     + +  Q   +  PF  T  Q  
Sbjct: 551  WTRARQKAAEKVRDVAAEL--LDVYAQRAAHTGFAFKHDREQYQLFCQGFPFDTTPDQAQ 608

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM +   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQH++
Sbjct: 609  AINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFD 668

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++    Q  + + LE+   G+  I+IGTH L Q  +++  L L+I
Sbjct: 669  NFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVRWRDLGLLI 728

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 729  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLAVK 788

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N     +R + L     + IA
Sbjct: 789  TFVREYDNL-VVREAMLREILRGGQVYYLYNDVE-----NIEKAAQRLSELVPE--ARIA 840

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 841  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 900

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  +S +++ RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 901  RGRVGRSHHQAYAYLLTPNPKAMSSDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELL 960

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  +       L+  LLE A +  K    ++P L  +      + L L
Sbjct: 961  GEDQSGQME--SVGFSLYMELLESAVESLKA--GREPSLDDLLSSQTDVELRL 1009


>gi|270261435|ref|ZP_06189708.1| hypothetical protein SOD_a06670 [Serratia odorifera 4Rx13]
 gi|270044919|gb|EFA18010.1| hypothetical protein SOD_a06670 [Serratia odorifera 4Rx13]
          Length = 1159

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT   ++       +A ++  +  ++  K   G       +  Q   ++ PF  T  QE 
Sbjct: 560  WTRARQKAAERVRDVAAELLDIYAQRAAK--SGFAFKHNREQYQLFCQSFPFETTPDQEQ 617

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE G Q  ++ P  +LAQQH++
Sbjct: 618  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGKQVAVLVPTTLLAQQHFD 677

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       I +E+++       +++ ++    G+  IIIGTH L Q  +++  L L+I
Sbjct: 678  NFRDRFATWPIRIEMMSRFRSAKEQQQIMDDAVDGKVDIIIGTHKLLQSDLRWKDLGLLI 737

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 738  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 797

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N     E+   L     + IA
Sbjct: 798  TFVREYDSL-VVREAILREVLRGGQVYYLYNDVE-----NIEKAAEKLAELVPE--ARIA 849

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+ FGLAQLHQL
Sbjct: 850  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADRFGLAQLHQL 909

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  +S +++ RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 910  RGRVGRSHHQAYAYLLTPNPKAMSTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELL 969

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  LLE A    K+   ++P L  +      + L +
Sbjct: 970  GEDQSGQMTT--VGFSLYMELLESAVDALKN--GREPSLEDLTSNQTEVELRM 1018


>gi|253688855|ref|YP_003018045.1| transcription-repair coupling factor [Pectobacterium carotovorum
            subsp. carotovorum PC1]
 gi|251755433|gb|ACT13509.1| transcription-repair coupling factor [Pectobacterium carotovorum
            subsp. carotovorum PC1]
          Length = 1150

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 238/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G     +    Q    + PF  T  Q  
Sbjct: 551  WSRARQKAAERVRDVAAELLDIYAQRAAK--SGFAFKHDKTQYQLFCESFPFETTPDQAQ 608

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQH++
Sbjct: 609  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFD 668

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + LE    G+  I+IGTH L Q  +++  L L+I
Sbjct: 669  NFRDRFANWPVKIEMISRFRSAREQTQVLEETQEGKVDILIGTHKLLQSDVRWRDLGLLI 728

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 729  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 788

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N     +R   L     + IA
Sbjct: 789  TFVREYDNL-VVREAILREILRGGQVYYLYNDVE-----NIEKATQRLAELVPE--ARIA 840

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 841  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 900

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  +S ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 901  RGRVGRSHHQAYAYLLTPNPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 960

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  LLE A    K    ++P L  +      + L L
Sbjct: 961  GDDQSGQMT--SVGFSLYMELLESAVDALKA--GREPSLEDLINSQTDVELRL 1009


>gi|301156034|emb|CBW15505.1| transcription-repair coupling factor [Haemophilus parainfluenzae
            T3T1]
          Length = 1149

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/480 (33%), Positives = 253/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W+   ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 548  HKLGNESWSKTRQKAAEKIRDVAAELLDVYAQREVK--KGFEFKYDREEFQQFAATFPFE 605

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q  AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 606  ETHDQAMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 665

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGTH L Q  +++
Sbjct: 666  LAQQHYENFKDRFANLPVNVEVLSRFKTTKEQKQILENLAEGKVDILIGTHKLIQSDVKF 725

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I   P
Sbjct: 726  SDLGLLIIDEEHRFGVGQKEKIKQLRENIDILTLTATPIPRTLNMAMNGIRDLSIIATPP 785

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  + E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 786  ARRVSIKTFVRQKDDL-IIREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVP 839

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + I HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A++FG
Sbjct: 840  E--ARVVIGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFG 897

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L++ ++   GF++A  DL+ 
Sbjct: 898  LAQLHQLRGRVGRSHHQAYAYLLTPPPKLMTKDAKRRLEALESLDNLGAGFILATHDLEI 957

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LL+ A K  K    ++P L  +  Q   I L +
Sbjct: 958  RGAGELLGNEQSGQIESIGFS--LYMELLDAAVKALKE--GREPSLEEITHQQAEIELRV 1013


>gi|288936122|ref|YP_003440181.1| transcription-repair coupling factor [Klebsiella variicola At-22]
 gi|288890831|gb|ADC59149.1| transcription-repair coupling factor [Klebsiella variicola At-22]
          Length = 1148

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT   ++       +A ++  +  ++  K   G     + +  Q      PF  T  Q  
Sbjct: 550  WTRARQKAAEKVRDVAAELLDIYAQRAAK--AGFAFKHDREQYQLFCDGFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFIAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + LE+ A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQSEVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +      G + Y++   +E     N +   ++   L     + IA
Sbjct: 788  TFVREYDAL-VVREAILRETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEDQSGQMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|259908777|ref|YP_002649133.1| transcription-repair coupling factor [Erwinia pyrifoliae Ep1/96]
 gi|224964399|emb|CAX55908.1| Transcription-repair-coupling factor [Erwinia pyrifoliae Ep1/96]
 gi|283478753|emb|CAY74669.1| Transcription-repair-coupling factor [Erwinia pyrifoliae DSM 12163]
          Length = 1148

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/496 (31%), Positives = 245/496 (49%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S        + P  K     W+   ++       +A ++  +  ++  K   G    
Sbjct: 527  HLISRYAGGAEENAPLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAK--TGFAFK 584

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             + +  Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   
Sbjct: 585  HDKQQYQLFCDSFPFETTVDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AVE   Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L     G+ 
Sbjct: 645  AVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMMSRFRTAKEQAQVLADAQEGKV 704

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L Q+ I++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL 
Sbjct: 705  DILIGTHKLLQNDIKWRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLN 764

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   PA R  +KT +   + +  V E +   +  G + Y++   +E   
Sbjct: 765  MAMSGMRDLSIIATPPARRLAVKTFVREYDEMA-VREAILREVLRGGQVYYLYNDVE--- 820

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              N     +R   L     + +A+ HG+M + + E VM+ F +    +L+ TT+IE GID
Sbjct: 821  --NIEKATKRLTELVPE--ARVALGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 876

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL   P  ++ +++ RL  + + 
Sbjct: 877  IPTANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAHKRLEAIASL 936

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG  QSG  + +     L+  LLE A    K    ++P
Sbjct: 937  EDLGAGFALATHDLEIRGAGELLGEGQSGQMETIGFS--LYMELLENAVDALKE--GREP 992

Query: 672  DLTSVRGQSIRILLYL 687
             L  +      I L +
Sbjct: 993  SLEDLTNNQTDIELRM 1008


>gi|262043184|ref|ZP_06016320.1| transcription-repair coupling factor [Klebsiella pneumoniae subsp.
            rhinoscleromatis ATCC 13884]
 gi|259039462|gb|EEW40597.1| transcription-repair coupling factor [Klebsiella pneumoniae subsp.
            rhinoscleromatis ATCC 13884]
          Length = 1148

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 241/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT   ++       +A ++  +  ++  K   G     + +  Q      PF  T  Q  
Sbjct: 550  WTRARQKAAEKVRDVAAELLDIYAQRAAK--AGFAFKHDREQYQLFCDGFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+ +       + + LE+ A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMFSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQSEVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +      G + Y++   +E     N +   ++   L     + IA
Sbjct: 788  TFVREYDAL-VVREAILRETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEDQSGQMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|238894149|ref|YP_002918883.1| transcription-repair coupling factor [Klebsiella pneumoniae
            NTUH-K2044]
 gi|238546465|dbj|BAH62816.1| transcription-repair ATP-dependent coupling factor [Klebsiella
            pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 1148

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT   ++       +A ++  +  ++  K   G     + +  Q      PF  T  Q  
Sbjct: 550  WTRARQKAAEKVRDVAAELLDIYAQRAAK--AGFAFKHDREQYQLFCDGFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + L++ A G+  I+IGTH L Q  ++   L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRSAKEQAQILKQAAEGKIDILIGTHKLLQSEVKLRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +      G + Y++   +E     N +   ++   L     + IA
Sbjct: 788  TFVREYDAL-VVREAILRETLRGGQVYYLFNDVE-----NIQKAADKLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 960  GEDQSGQMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 1008


>gi|310767325|gb|ADP12275.1| transcription-repair coupling factor [Erwinia sp. Ejp617]
          Length = 1148

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/496 (31%), Positives = 246/496 (49%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S        + P  K     W+   ++       +A ++  +  ++  K   G    
Sbjct: 527  HLISRYAGGAEENAPLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAK--TGFAFK 584

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             + +  Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   
Sbjct: 585  HDKQQYQLFCDSFPFETTVDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AVE   Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L     G+ 
Sbjct: 645  AVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMMSRFRTAKEQAQVLADAQEGKV 704

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L Q+ I++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL 
Sbjct: 705  DILIGTHKLLQNDIKWRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLN 764

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   PA R  +KT +   + +  V E +   +  G + Y++   +E   
Sbjct: 765  MAMSGMRDLSIIATPPARRLAVKTFVREYDEMA-VREAILREVLRGGQVYYLYNDVE--- 820

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              N     +R + L     + +A+ HG+M + + E VM+ F +    +L+ TT+IE GID
Sbjct: 821  --NIEKATKRLSELVPE--ARVALGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 876

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL   P  ++ +++ RL  + + 
Sbjct: 877  IPTANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAHKRLEAIASL 936

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG  QSG  + +     L+  LLE A    K    ++P
Sbjct: 937  EDLGAGFALATHDLEIRGAGELLGEGQSGQMETIGFS--LYMELLENAVDALKE--GREP 992

Query: 672  DLTSVRGQSIRILLYL 687
             L  +      I L +
Sbjct: 993  SLEDLTNNQTDIELRM 1008


>gi|254670469|emb|CBA06145.1| transcription-repair coupling factor [Neisseria meningitidis
            alpha153]
          Length = 1286

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 151/449 (33%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 709  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 768

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 769  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 828

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                +  LE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 829  SKATKAVLEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 888

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 889  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 947

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 948  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 1000

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 1001 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1060

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1061 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 1118

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1119 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1145


>gi|119774467|ref|YP_927207.1| transcription-repair coupling factor [Shewanella amazonensis SB2B]
 gi|119766967|gb|ABL99537.1| transcription-repair coupling factor [Shewanella amazonensis SB2B]
          Length = 1155

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 154/476 (32%), Positives = 251/476 (52%), Gaps = 19/476 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  W+   R+ +     +A ++  +  R++ +     P  ++     +  +  PF  T  
Sbjct: 551  NESWSKAKRKAIEKIRDVAAELLDVYARREARPGD--PCTLDEAEYAQFAQGFPFEETVD 608

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            QE+AIK ++ DM Q   M R++ GDVG GKT VA+ A   AV +G Q V++ P  +LAQQ
Sbjct: 609  QETAIKAVIDDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLVPTTLLAQQ 668

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            H+E  K    +  + +E+++       ++  L  +  G+  I+IGTH L    + +  L 
Sbjct: 669  HFENFKDRFADWPVRIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNTELNFESLG 728

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+I+DE+HRFGV+Q+ ++        +L +TATPIPRTL +   G  D+S I   PA R 
Sbjct: 729  LLIIDEEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRL 788

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             +KT +   ++   V E +   +  G + Y++  Q+E  +    ++  +    L E   +
Sbjct: 789  AVKTFVREYDK-ATVREAILREILRGGQVYYLHNQVETIE----KAAQDIRELLPE---A 840

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             +   HG+M + + E VM  F +    +L+ TT+IE GIDV  A+ I+I+ A+HFGLAQL
Sbjct: 841  RVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANTILIDRADHFGLAQL 900

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR    +   L+   P  ++ ++  RL  +   ED   GF++A +DL+ R  G
Sbjct: 901  HQLRGRVGRSHHQAYAYLMTPHPKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIRGAG 960

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            E+LG +QSG    +     L+  +LE A K  K    ++P L  + G    I L +
Sbjct: 961  ELLGDEQSGHISKIGFS--LYMEMLEGAVKALKQ--GKEPSLRQMLGAQCEIDLRI 1012


>gi|262275596|ref|ZP_06053405.1| transcription-repair coupling factor [Grimontia hollisae CIP 101886]
 gi|262219404|gb|EEY70720.1| transcription-repair coupling factor [Grimontia hollisae CIP 101886]
          Length = 1154

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 154/474 (32%), Positives = 239/474 (50%), Gaps = 21/474 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    +        +A ++  +  ++  K   G     + +         PF  T  Q+ 
Sbjct: 555  WEKARKRAAEKVRDVAAELLDVYAKRATK--PGFAFKHDREAYLDFCAGFPFEETADQKQ 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH+E
Sbjct: 613  AINAVLSDMCQPIAMDRLVCGDVGFGKTEVAMRAAFLAVNNSKQVAVLVPTTLLAQQHFE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + VE+++       ++  L  +A G+  I+IGTH L Q  + ++ L L+I
Sbjct: 673  NFRDRFANQPVRVEVLSRFKSAKEQKLILADVAEGKVDILIGTHKLLQSDVIFHDLGLLI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   P+ R  IK
Sbjct: 733  VDEEHRFGVRQKEKVKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPSRRLAIK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSI 518
            T +        + E +   +  G + Y++   I+  +        +  N L E    + I
Sbjct: 793  TFVRERES-SLIREAVLREIMRGGQVYFLHNDIDSIE--------KTANELAELVPEARI 843

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M + + E +M  F +    +L+ TT+IE GIDV  A+ II++ A+H GLAQLHQ
Sbjct: 844  TVAHGQMRERELERIMSDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADHLGLAQLHQ 903

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+
Sbjct: 904  LRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGEL 963

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            LG +QSG  + +     L+  +LE A +  K    ++P L  +  Q   I L +
Sbjct: 964  LGDEQSGQIQSI--GFTLYMEMLEQAVEALKE--GKEPSLDDLLNQQTDIELRI 1013


>gi|329297178|ref|ZP_08254514.1| transcription-repair coupling factor [Plautia stali symbiont]
          Length = 1147

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/496 (32%), Positives = 246/496 (49%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S        + P  K     W+   ++       +A ++  +  ++  K   G    
Sbjct: 527  HLISRYAGGADENAPLHKLGSDAWSRARQKAAEKVRDVAAELLGIYAQRAAK--AGFAFK 584

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             + +  Q      PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+     
Sbjct: 585  HDREQYQLFCEGFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRVAFL 644

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AVE G Q  ++ P  +LAQQHY+  +    N  + +E+++       + + LE+ + G+ 
Sbjct: 645  AVENGKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQVLEQASEGRI 704

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L    +++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL 
Sbjct: 705  DILIGTHKLLMSDLKWRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLN 764

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   PA R  +KT +   + +  V E +   +  G + Y++   +E   
Sbjct: 765  MAMSGMRDLSIIATPPARRLAVKTFVREYDSL-VVREAILREVLRGGQVYYLYNDVE--- 820

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              N     +R   L     + IAI HG+M + D E +M+ F +    +L+ TT+IE GID
Sbjct: 821  --NIEKAAQRLAELVPE--ARIAIGHGQMRERDLERMMNDFHHQRFNVLVCTTIIETGID 876

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            V  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  PP  ++ ++  RL  + + 
Sbjct: 877  VPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPPPKAMTTDAQKRLEAIASL 936

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG  QSG  + +     L+  LLE A    K    ++P
Sbjct: 937  EDLGAGFALATHDLEIRGAGELLGEDQSGQMETI--GFTLYMELLENAVDALKA--GREP 992

Query: 672  DLTSVRGQSIRILLYL 687
             L  +      I L +
Sbjct: 993  SLEDLTSNQTEIELRM 1008


>gi|254805085|ref|YP_003083306.1| transcription-repair coupling factor [Neisseria meningitidis alpha14]
 gi|254668627|emb|CBA06236.1| transcription-repair coupling factor [Neisseria meningitidis alpha14]
          Length = 1375

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 152/453 (33%), Positives = 238/453 (52%), Gaps = 17/453 (3%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  L  R+  +   G    +     Q       +  T+ Q +AI  +++D++Q   M R
Sbjct: 796  ELLNLYARRAAQ--SGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDR 853

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++
Sbjct: 854  LVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLS 913

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                    + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +
Sbjct: 914  RFNNSKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKR 973

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                  +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E + 
Sbjct: 974  LRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLSVKTFVKPFSE-GSVREAVL 1032

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              L  G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  
Sbjct: 1033 RELKRGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRD 1085

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F      +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL 
Sbjct: 1086 FLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLT 1145

Query: 597  HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
               ++K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+ 
Sbjct: 1146 PEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYT 1203

Query: 654  SLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             +L+ A +D K    + PDL +  G +  I L+
Sbjct: 1204 EMLKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1234


>gi|332534806|ref|ZP_08410631.1| transcription-repair coupling factor [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035770|gb|EGI72256.1| transcription-repair coupling factor [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 1137

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/481 (32%), Positives = 246/481 (51%), Gaps = 21/481 (4%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
            K     W    +        +A ++  +  ++Q K        ++    ++   + PF 
Sbjct: 532 HKLGSDAWEKAKKRAAEKVRDVAAELLDIYAQRQAKPGN--KFTLDAPAYRQFSDSFPFE 589

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q +AI+ +L DM  K  M R++ GDVG GKT VA+ A   AV    Q  I+ P  +
Sbjct: 590 ETDDQRNAIEAVLGDMQSKQAMDRLVCGDVGFGKTEVAMRAAFVAVNDDKQVAILVPTTL 649

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LAQQHYE  K    +  I V +++       ++  LE++A+G+  I+IGTH L Q  I++
Sbjct: 650 LAQQHYENFKDRFADFPIEVGVLSRFNSTKEQKDTLEKMANGKLDIVIGTHKLIQQDIKF 709

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   P
Sbjct: 710 NDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 769

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A R  +KT +   + ++ + E +   +  G + Y++   +E  +             + E
Sbjct: 770 AKRLAVKTFVRQRD-VELIREAVLREIKRGGQVYFLHNNVETIE--------RVAQEISE 820

Query: 513 HFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               +S+   HG+M + + E +M  F +    +L+ TT+IE GIDV  A+ II++ A+  
Sbjct: 821 WVPEASVTTAHGQMREQELEQIMTDFYHQKYNVLVCTTIIETGIDVPTANTIIMDRADKL 880

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLK 626
           GLAQLHQLRGRVGR    +   LL   P  LSK++  RL  +++ ED   GF +A  DL+
Sbjct: 881 GLAQLHQLRGRVGRSHHQAYAYLLTGDPKALSKDASKRLQAIESLEDLGAGFALATHDLE 940

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE+LG  QSG  + +     L+  +LE A    +    ++P L ++  +   + L 
Sbjct: 941 IRGAGELLGDDQSGQMQTIGFS--LYMEMLEQAVNALRE--GKEPTLENLLQKQTEVDLK 996

Query: 687 L 687
           L
Sbjct: 997 L 997


>gi|251789258|ref|YP_003003979.1| transcription-repair coupling factor [Dickeya zeae Ech1591]
 gi|247537879|gb|ACT06500.1| transcription-repair coupling factor [Dickeya zeae Ech1591]
          Length = 1150

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/473 (33%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT   ++       +A ++  L +  Q     G     +    Q   +  PF  T  Q  
Sbjct: 551  WTRARQKAAEKVRDVAAEL--LDVYAQRAAHTGFAFKHDRDQYQLFCQGFPFDTTPDQAQ 608

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM +   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQH++
Sbjct: 609  AINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFD 668

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +++++    Q  + + LE+   G+  I+IGTH L Q  +++  L L+I
Sbjct: 669  NFRDRFANWPVRIDMLSRFRSQKEQAQVLEQTQDGKVDILIGTHKLLQSDVRWRDLGLLI 728

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 729  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLAVK 788

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N     +R + L     + IA
Sbjct: 789  TFVREYDSL-VVREAMLREILRGGQVYYLYNDVE-----NIDKATQRLSELVPE--ARIA 840

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+ +A+ IIIE A+HFGLAQLHQL
Sbjct: 841  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPNANTIIIERADHFGLAQLHQL 900

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  +S +++ RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 901  RGRVGRSHHQAYAYLLTPNPKAMSSDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELL 960

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  +       L+  LLE A +  K    ++P L  +      + L L
Sbjct: 961  GEDQSGQME--SVGFSLYMDLLESAVESLKA--GREPSLEDLISSQTDVELRL 1009


>gi|281418467|ref|ZP_06249486.1| transcription-repair coupling factor [Clostridium thermocellum JW20]
 gi|281407551|gb|EFB37810.1| transcription-repair coupling factor [Clostridium thermocellum JW20]
          Length = 1178

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 144/454 (31%), Positives = 240/454 (52%), Gaps = 19/454 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + LA ++  L    Q +   G     +    ++     P+  T+ Q 
Sbjct: 580  DWAKTRARTKESLKELAQELINLYA--QREMVEGHAFGKDTVWQKQFEDLFPYQETEDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I++I +DM     M R+L GDVG GKT VA+ A+  AV  G Q   + P  +LAQQHY
Sbjct: 638  RCIEEIKRDMESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMDGKQVAYLVPTTVLAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+  ++  I VE+++    QA +++ L+ +  G   ++IGTH L Q  + +  L L+
Sbjct: 698  NTFKERMKDFPITVEVLSRFRTQAEQKRILKDVKAGMVDVLIGTHRLLQKDVCFKDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  DIS I E P  R P+
Sbjct: 758  VIDEEQRFGVTHKEKIKQMKTNIDVLTLTATPIPRTLHMSLVGIRDISTIEEPPEERYPV 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T ++  N  + V + +   +S G + +++  ++        R++ ++   + +    + 
Sbjct: 818  QTYVMEYND-EVVRDAINREMSRGGQVFYLYNRV--------RAINQKAAEIQKLVPEAR 868

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +AI HG+M++ + E++M  F NG   +L+ TT+IE G+D+ + + II+E+A+  GLAQL+
Sbjct: 869  VAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVEDADKMGLAQLY 928

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++   + Y     LS+ +  RL  +K       GF IA  DL+ R  G 
Sbjct: 929  QLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAMRDLQLRGAGN 988

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            +LG +Q G    +     ++  LL  A  + + I
Sbjct: 989  LLGPQQHGHIDSVGYD--MYCKLLAEAVNELRGI 1020


>gi|319896952|ref|YP_004135147.1| transcription-repair coupling factor [Haemophilus influenzae F3031]
 gi|317432456|emb|CBY80811.1| transcription-repair coupling factor [Haemophilus influenzae F3031]
          Length = 1146

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/480 (33%), Positives = 254/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 545  HKLGNEAWAKSCQKAAEKIRDVAAELLDVYAQREAK--KGFAFKYDREEFQQFAATFPFE 602

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 603  ETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 662

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGTH L Q  +++
Sbjct: 663  LAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKF 722

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 723  NDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 782

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 783  ARRLSIKTFVRQNDDL-VVREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVP 836

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A+HFG
Sbjct: 837  E--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFG 894

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++   GF++A  DL+ 
Sbjct: 895  LAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEI 954

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LL+ A K  K    ++P L  +  Q   I L +
Sbjct: 955  RGAGELLGNEQSGQIENIGFS--LYMELLDAAVKALKE--GREPSLEELTQQQADIELRV 1010


>gi|322515432|ref|ZP_08068423.1| transcription-repair coupling factor [Actinobacillus ureae ATCC
            25976]
 gi|322118555|gb|EFX90788.1| transcription-repair coupling factor [Actinobacillus ureae ATCC
            25976]
          Length = 1162

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 157/480 (32%), Positives = 248/480 (51%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    ++       +A ++  +  +++ +   G     +     +     PF 
Sbjct: 562  HKLGSEAWAKTRQKAAEKIRDVAAELLDVYTKRESQ--KGFAFAYDRDSFMQFSHTFPFE 619

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +
Sbjct: 620  ETEDQKTAINAVISDMRLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAVLVPTTL 679

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+E  K    N  I VE+++       ++  LE++A G+  I++GTH L Q+ +Q+
Sbjct: 680  LAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQEDVQF 739

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+++DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I   P
Sbjct: 740  RDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSIIASPP 799

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +    +        L  
Sbjct: 800  ARRLTIKTFVRQHDDL-VVREAILREILRGGQVYYLHNDVATIENCATK-----LAELVP 853

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ III+ A+ FG
Sbjct: 854  E--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIDRADKFG 911

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  L+K++  RL  L + ++   GF++A  DL+ 
Sbjct: 912  LAQLHQLRGRVGRSHHQAYAYLLTPPPKTLTKDAQQRLEALSSIDNLGAGFVLATHDLEI 971

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     +   LLE A K  +    ++P L  +    + I L +
Sbjct: 972  RGAGELLGSEQSGQIESIGFSLYMD--LLENAVKALQE--GREPTLEEITQNQVEIELRI 1027


>gi|262171148|ref|ZP_06038826.1| transcription-repair coupling factor [Vibrio mimicus MB-451]
 gi|261892224|gb|EEY38210.1| transcription-repair coupling factor [Vibrio mimicus MB-451]
          Length = 1156

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 555  WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 613  AINAVLSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       +++ L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 673  NFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 733  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +  G + Y++  Q+E         V      L     + + 
Sbjct: 793  TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETID-----KVAADLEKLVPE--ARVT 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A    K    ++P L  +  +   + + L
Sbjct: 965  GEEQSGQIQSI--GFTLYMEMLEQAVDALKS--GKEPALDDLLREQTEVEMRL 1013


>gi|256003231|ref|ZP_05428223.1| transcription-repair coupling factor [Clostridium thermocellum DSM
            2360]
 gi|255992922|gb|EEU03012.1| transcription-repair coupling factor [Clostridium thermocellum DSM
            2360]
 gi|316939280|gb|ADU73314.1| transcription-repair coupling factor [Clostridium thermocellum DSM
            1313]
          Length = 1178

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 144/454 (31%), Positives = 240/454 (52%), Gaps = 19/454 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + LA ++  L    Q +   G     +    ++     P+  T+ Q 
Sbjct: 580  DWAKTRARTKESLKELAQELINLYA--QREMAEGHAFGKDTVWQKQFEDLFPYQETEDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I++I +DM     M R+L GDVG GKT VA+ A+  AV  G Q   + P  +LAQQHY
Sbjct: 638  RCIEEIKRDMESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMDGKQVAYLVPTTVLAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+  ++  I VE+++    QA +++ L+ +  G   ++IGTH L Q  + +  L L+
Sbjct: 698  NTFKERMKDFPITVEVLSRFRTQAEQKRILKDVKAGMVDVLIGTHRLLQKDVCFKDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  DIS I E P  R P+
Sbjct: 758  VIDEEQRFGVTHKEKIKQMKTNIDVLTLTATPIPRTLHMSLVGIRDISTIEEPPEERYPV 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T ++  N  + V + +   +S G + +++  ++        R++ ++   + +    + 
Sbjct: 818  QTYVMEYND-EVVRDAINREMSRGGQVFYLYNRV--------RAINQKAAEIQKLVPEAR 868

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +AI HG+M++ + E++M  F NG   +L+ TT+IE G+D+ + + II+E+A+  GLAQL+
Sbjct: 869  VAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVEDADKMGLAQLY 928

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++   + Y     LS+ +  RL  +K       GF IA  DL+ R  G 
Sbjct: 929  QLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAMRDLQLRGAGN 988

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            +LG +Q G    +     ++  LL  A  + + I
Sbjct: 989  LLGPQQHGHIDSVGYD--MYCKLLAEAVNELRGI 1020


>gi|167039252|ref|YP_001662237.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514]
 gi|300913892|ref|ZP_07131209.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561]
 gi|307725423|ref|YP_003905174.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513]
 gi|166853492|gb|ABY91901.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514]
 gi|300890577|gb|EFK85722.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561]
 gi|307582484|gb|ADN55883.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513]
          Length = 1165

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/561 (29%), Positives = 267/561 (47%), Gaps = 46/561 (8%)

Query: 125  VTGKIKKLKNRIIMVHPHYIFHNSQDV----------NFPLIEAVYSLP-TGLSVDLFKK 173
            + G+ K+ K  + + +   I   ++                 E +  +   G+  D   K
Sbjct: 476  IFGQTKRRKRTVKIKNADKIKSFTELEIGSYVVHVNYGIGKYEGIEKIKVDGIVRDYL-K 534

Query: 174  IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAY 230
            II      L V  E +  DL+QK   P+         NP K       EW    R+    
Sbjct: 535  IIYAGGDTLFVPVEQL--DLVQKYVGPT--------DNPPKLNKLGGSEWLKAKRKAKKA 584

Query: 231  DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
             E LA  +  L  ++Q     G   + +    ++     P+  T+ Q   IK+I +DM +
Sbjct: 585  VEDLAKDLIQLYAKRQ--MVKGHAFSPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDMEK 642

Query: 291  KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
               M R+L GDVG GKT VAL A   AV  G Q   + P  ILA QHY    +  +   +
Sbjct: 643  DRPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVAFLCPTTILAYQHYANFIERFKEFPV 702

Query: 351  IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +E+++       + K ++ +A G   II+GTH L Q+ I++  L L+I+DE+ RFGV  
Sbjct: 703  KIEMLSRFRTPKEQSKIIKELAEGNIDIIVGTHRLLQNDIKFKDLGLLIIDEEQRFGVVH 762

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            + K+ +      VL ++ATPIPRTL ++ +G  D+S +   P  R P++T ++  N  + 
Sbjct: 763  KEKIKKLKENIDVLTLSATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNE-EL 821

Query: 471  VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDI 528
            + + +   ++ G + Y++  ++         + +E+  S  +       +A+ HG+M + 
Sbjct: 822  IKDAILREIARGGQVYFVYNRV---------NGIEKMASFVKDLVPGCRVAVAHGQMEES 872

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
              E VM  F NG   +L++TT+IE G+D+ + + II+ +A+  GL+QL+QLRGRVGR   
Sbjct: 873  QLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGLSQLYQLRGRVGRSNR 932

Query: 589  ISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK 643
            ++     Y     LS+ +  RL  +K       GF IA  DL+ R  G +LG +Q G   
Sbjct: 933  LAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHGHID 992

Query: 644  FLIAQPELHDSLLEIARKDAK 664
             +     L   LLE A ++ K
Sbjct: 993  AIGYDLYL--KLLEEAIRNLK 1011


>gi|304397240|ref|ZP_07379119.1| transcription-repair coupling factor [Pantoea sp. aB]
 gi|304355389|gb|EFM19757.1| transcription-repair coupling factor [Pantoea sp. aB]
          Length = 1147

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G       +  Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAK--SGFAFKHNREQYQLFCESFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A+E   Q  ++ P  +LAQQHY+
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAIENHKQVAVLVPTTLLAQQHYD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       + + LE+ + G+  I+IGTH L    ++++ L L+I
Sbjct: 668  NFRDRFANWPVRIEMLSRFRTAKEQAQVLEQASDGKIDILIGTHKLLMSDLKWHDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  + E +   +  G + Y++   +E     N     +R + L     + +A
Sbjct: 788  TFVREFDDL-VIREAILREVLRGGQVYYLYNDVE-----NIEKAAQRLSELVPE--ARVA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ +++ RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKSMTADAHKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + L     L+  LLE A    K    ++P L  +      + L +
Sbjct: 960  GDEQSGQMETL--GFTLYMELLENAVDALKA--GREPSLEDLTSNQTEVELRM 1008


>gi|328473273|gb|EGF44121.1| transcription-repair coupling factor [Vibrio parahaemolyticus 10329]
          Length = 1153

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/473 (32%), Positives = 239/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+       +A ++  +  +++ K   G    ++           PF  T  Q  
Sbjct: 553  WSKARRKAAEKVRDVAAELLDVYAKRELK--PGFKFALDRGQYATFKATFPFEETDDQAM 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A +   Q  ++ P  +LAQQH+E
Sbjct: 611  AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVPTTLLAQQHFE 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       ++  L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 671  NFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSDIKFKDLGLLI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 731  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +        V E +   +  G + Y++  Q+E  +        E    L     + I 
Sbjct: 791  TFVREREE-SVVQEAVLREIMRGGQVYFLHNQVETIE-----KTAEDLQKLIPE--ARIT 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E +M+ F +    +L+ TT+IE GIDV  A+ II++ A++ GLAQLHQL
Sbjct: 843  VAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   + L +
Sbjct: 963  GDEQSGQI--QSVGFTLYMEMLEQAVEALKE--GKEPSLDDLLREQTEVELRI 1011


>gi|297545520|ref|YP_003677822.1| transcription-repair coupling factor [Thermoanaerobacter mathranii
            subsp. mathranii str. A3]
 gi|296843295|gb|ADH61811.1| transcription-repair coupling factor [Thermoanaerobacter mathranii
            subsp. mathranii str. A3]
          Length = 1163

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 164/578 (28%), Positives = 272/578 (47%), Gaps = 46/578 (7%)

Query: 108  RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV----------NFPLIE 157
            +  E +   F    +  + G+ +K K  + + +   I   ++                 E
Sbjct: 459  KGFEYVDAKFAVITEGEIFGQTRKSKKTVKIKNADKIKSFTELEVGSYVVHVNYGIGKYE 518

Query: 158  AVYSLP-TGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
             +  +   G+  D   KII      L V  E +  DL+QK   P+         NP K  
Sbjct: 519  GIEKIKVDGIIRDYL-KIIYAGGDTLFVPVEQL--DLVQKYVGPT--------DNPPKLN 567

Query: 217  DF---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                 EW    R+     E LA  +  L  ++Q     G   + +    ++     P+  
Sbjct: 568  KLGGSEWLKAKRKAKKAVEDLAKDLLQLYAKRQIA--KGHAFSPDTPWQREFEEQFPYEE 625

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T+ Q   IK+I +DM +   M R+L GDVG GKT VAL A   AV  G Q   + P  IL
Sbjct: 626  TEDQLRCIKEIKEDMEKDKPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVAFLCPTTIL 685

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            A QHY    +  +   + +E+++       + + ++ +A G   II+GTH L Q+ +++ 
Sbjct: 686  AYQHYTNFMERFKEFPVKIEMLSRFRTPKEQAQIIKGLAEGTIDIIVGTHRLLQNDVKFK 745

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L L+I+DE+ RFGV  + K+ +      VL ++ATPIPRTL ++ +G  D+S +   P 
Sbjct: 746  DLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLIGIRDMSVLENPPE 805

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             R P++T ++  N  + + + +   +  G + Y++  ++         + +E+  SL + 
Sbjct: 806  DRFPVETYVVEFNE-ELIKDAILREIGRGGQVYFVYNRV---------NGIEKMASLVKD 855

Query: 514  FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                  +A+ HG+M +   E VM  F NG   +L++TT+IE G+D+ + + II+ +A+  
Sbjct: 856  LVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKL 915

Query: 572  GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLK 626
            GL+QL+QLRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL+
Sbjct: 916  GLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMRDLE 975

Query: 627  QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R  G +LG +Q G    +     L   LLE A ++ K
Sbjct: 976  IRGAGNLLGAEQHGHIGAIGYDLYL--KLLEEAIRNLK 1011


>gi|327537366|gb|EGF24098.1| ATP-dependent DNA helicase RecG [Rhodopirellula baltica WH47]
          Length = 556

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 187/548 (34%), Positives = 295/548 (53%), Gaps = 34/548 (6%)

Query: 178 ALSRLPVLPEWIEKDLLQKKS---------FPSIAEAFNIIHNPRKAKDFEWTSPARERL 228
           A     VLPE +  +  Q+ +          P I++A   IH P    D         RL
Sbjct: 10  AGQLTEVLPERLRTEAAQRLNAAGMELPDVLPEISDALRGIHLPESEADLTAAQT---RL 66

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
            + ELL  Q+AL + R+    E+  P +     +  +ILR  PF  T  Q   +  I  D
Sbjct: 67  VFQELLVMQLALAMRRRSLTSELRAPSLECTATVRNRILRRFPFELTGDQRRVMDVIAAD 126

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           M+++  M R+LQGDVGSGKT+VA+ AM  AV  G QA +MAP  +LA+QH+  +++   +
Sbjct: 127 MARQFPMNRLLQGDVGSGKTVVAIFAMLVAVAGGHQATLMAPTEVLARQHHATLQRMLAD 186

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
           +++ V ++ G++  A RR+ +E+I  G+  I+IGT AL    +++++L L ++DEQH+FG
Sbjct: 187 SRVRVGLLCGSLGAAERRETVEKIRAGELDIVIGTQALLY-GVEFHRLGLCVIDEQHKFG 245

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           V+QR+ L      PH L+M+ATPIPR++ +T  GD+D+S + EKPAGR  + T +   + 
Sbjct: 246 VKQRVTLRDGGVDPHYLVMSATPIPRSVAMTQFGDVDLSTLREKPAGRGAVHTYLAGDSW 305

Query: 468 IDEVIERLKVVLSEGKKAYWICPQI-----------------EEKKESNFRSVVERFNSL 510
            D     +K  ++EG++A+ + P++                  E    +  SV   +  L
Sbjct: 306 RDRWWAFVKERVAEGRQAFVVAPRVGPEVESADEELSELIDPAEPPAEDITSVHSTYEQL 365

Query: 511 HEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                    + ++HGRM+  +K+ VM+SF  G   +L++TTVIEVGIDV +A+++ I   
Sbjct: 366 RTGPLKGLRVGLLHGRMASDEKQQVMESFAEGELDVLVSTTVIEVGIDVPNATVMAILGG 425

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
             FGLAQLHQLRGRV RG       +            RL V + T DGF +AE D + R
Sbjct: 426 NRFGLAQLHQLRGRVSRGTHAGHVCVFVDGDKPPQDDERLKVFEQTLDGFELAEADFRLR 485

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLY 688
             G++LG +QSG  +  IA       +L++AR+ A+  + QDP++ S   + ++  + L 
Sbjct: 486 GPGDVLGQRQSGDARLRIADLHRDVEILQVAREMAQDWIDQDPEMESEGLEDLKSQV-LR 544

Query: 689 QYNEAFQF 696
           +Y      
Sbjct: 545 RYGNHLDL 552


>gi|146282996|ref|YP_001173149.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri
            A1501]
 gi|145571201|gb|ABP80307.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri
            A1501]
          Length = 1148

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 242/480 (50%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    R+       +A ++  +  R+  ++             +      PF 
Sbjct: 542  HKLGSETWQKAKRKAAEQVRDVAAELLDIYARRAARQG--YAFKDPQVDYETFAAGFPFE 599

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q++AI  + +D+     M R++ GDVG GKT VA+ A   AV  G Q  ++ P  +
Sbjct: 600  ETPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAVLVPTTL 659

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHY   +    +  + VE+++        + A+  +A G+  I+IGTH L QD +++
Sbjct: 660  LAQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAITELADGKIDILIGTHKLLQDDVKF 719

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL ++  G  D+S I   P
Sbjct: 720  SNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIATPP 779

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  ++T ++  N    + E L   L  G + Y++   ++  ++           +L  
Sbjct: 780  ARRLSVRTFVMEANN-PTIKEALLRELLRGGQVYYLHNDVKTIEK-----CAADLQALVP 833

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IAI HG+M + D E VM  F +    +L+A+T+IE GIDV  A+ IIIE A+ FG
Sbjct: 834  E--ARIAIGHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFG 891

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + N +D   GF++A  DL+ 
Sbjct: 892  LAQLHQLRGRVGRSHHQAYAYLLTPPRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEI 951

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG  QSG          L+  +LE A K  +    + P+L    G    I L L
Sbjct: 952  RGAGELLGEGQSGQI--QAVGFTLYMEMLERAVKAIRK--GEQPNLEQPLGGGPEINLRL 1007


>gi|77360776|ref|YP_340351.1| transcription-repair ATP-dependent coupling factor [Pseudoalteromonas
            haloplanktis TAC125]
 gi|76875687|emb|CAI86908.1| transcription-repair ATP-dependent coupling factor [Pseudoalteromonas
            haloplanktis TAC125]
          Length = 1157

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/481 (32%), Positives = 246/481 (51%), Gaps = 21/481 (4%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    +        +A ++  +  ++Q K        ++    ++   + PF 
Sbjct: 552  HKLGSDAWDKAKKRAAEKVRDVAAELLDIYAQRQAKPGN--KFTLDAPAYRQFSDSFPFE 609

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI+ +L DM  K  M R++ GDVG GKT VA+ A   AV    Q  I+ P  +
Sbjct: 610  ETDDQRNAIEAVLGDMQSKQAMDRLVCGDVGFGKTEVAMRAAFVAVNDNKQVAILVPTTL 669

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+E  K    +  I V +++       ++  LE++A+G+  I+IGTH L Q  I +
Sbjct: 670  LAQQHFENFKDRFADFPIEVGVLSRFNSPKEQKDTLEKMANGKLDIVIGTHKLIQADIIF 729

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   P
Sbjct: 730  NDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 789

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  +KT +   + ++ + E +   +  G + Y++   +E  +             + E
Sbjct: 790  AKRLAVKTFVRQRD-VELIREAVLREIKRGGQVYFLHNNVETIE--------RVAQEISE 840

Query: 513  HFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                +S+   HG+M + + E +M  F +    +L+ TT+IE GID+  A+ II++ A+  
Sbjct: 841  WVPEASVTSAHGQMREQELEQIMADFYHQKYNVLVCTTIIETGIDIPTANTIIMDRADKL 900

Query: 572  GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GLAQLHQLRGRVGR    +   LL   P  LSK++  RL  +++ ED   GF +A  DL+
Sbjct: 901  GLAQLHQLRGRVGRSHHQAYAYLLTGDPKALSKDASKRLQAIESLEDLGAGFALATHDLE 960

Query: 627  QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             R  GE+LG  QSG  + +     L+  +LE A K  +    ++P L ++  +   + L 
Sbjct: 961  IRGAGELLGDDQSGQMQTIGFS--LYMEMLEQAVKALRE--GKEPTLENLLQKQTEVDLK 1016

Query: 687  L 687
            L
Sbjct: 1017 L 1017


>gi|146306624|ref|YP_001187089.1| transcription-repair coupling factor [Pseudomonas mendocina ymp]
 gi|145574825|gb|ABP84357.1| transcription-repair coupling factor [Pseudomonas mendocina ymp]
          Length = 1145

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 157/501 (31%), Positives = 246/501 (49%), Gaps = 24/501 (4%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
             L+ + S     +A   +H         W    R+       +A ++  +  R+  ++  
Sbjct: 526  HLIARYSGSD--DALAPLHR---LGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREG- 579

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                              PF  T  Q++AI  +  DM     M R++ GDVG GKT VA+
Sbjct: 580  -FAFQDPALDYATFSAGFPFEETPDQQAAIDAVRADMLAGKPMDRLVCGDVGFGKTEVAM 638

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A   AV +G Q  ++ P  +LAQQHY   +    +  + VE+++          A++++
Sbjct: 639  RAAFIAVHSGKQVAVLVPTTLLAQQHYNSFRDRFADWPVKVEVMSRFKSAKEVEGAVQQL 698

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            A G+  I+IGTH L QD ++++ L LVI+DE+HRFGV+Q+ +L    +   +L +TATPI
Sbjct: 699  AEGKVDIVIGTHKLLQDDVKFHNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPI 758

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            PRTL +   G  D+S I   PA R  ++T ++  N+   + E L   L  G + Y++   
Sbjct: 759  PRTLNMAVAGMRDLSIIATPPARRLSVRTFVMEENK-PTIKEALLRELLRGGQVYYLHND 817

Query: 492  IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            ++   +            L     + I + HG+M + + E VM  F +    +L+A+T+I
Sbjct: 818  VKTIDKCAS-----ELAELVPE--ARIGVGHGQMRERELEQVMSDFYHKRFNVLVASTII 870

Query: 552  EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLS 609
            E GIDV  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL 
Sbjct: 871  ETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKSMTDDAQKRLE 930

Query: 610  VLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
             +   +D   GF++A  DL+ R  GE+LG  QSG          L+  +LE A K  +  
Sbjct: 931  AIAGAQDLGAGFILATHDLEIRGAGELLGDGQSGQI--QAVGFTLYMEMLERAVKAIQK- 987

Query: 667  LTQDPDLTSVRGQSIRILLYL 687
              + P+L    G    I L +
Sbjct: 988  -GEQPNLDQPLGGGPEINLRV 1007


>gi|229520346|ref|ZP_04409772.1| transcription-repair coupling factor [Vibrio cholerae TM 11079-80]
 gi|229342712|gb|EEO07704.1| transcription-repair coupling factor [Vibrio cholerae TM 11079-80]
          Length = 1157

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 557  WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 614

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 615  AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 674

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       +++ L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 675  NFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 734

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 735  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 794

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +  G + Y++  Q+E         V      L     + I 
Sbjct: 795  TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETID-----KVAADLEKLVPE--ARIT 846

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 847  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 906

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 907  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 966

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   + + L
Sbjct: 967  GEEQSGQI--QSVGFTLYMEMLEQAVEALKS--GKEPALDDLLREQTEVEMRL 1015


>gi|319638036|ref|ZP_07992800.1| transcription-repair coupling factor [Neisseria mucosa C102]
 gi|317400681|gb|EFV81338.1| transcription-repair coupling factor [Neisseria mucosa C102]
          Length = 1134

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 154/477 (32%), Positives = 243/477 (50%), Gaps = 17/477 (3%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
            K     W    R+        A ++  L  ++  +   G    +     Q       + 
Sbjct: 531 HKLGSGAWNKSKRKAAEKARDTAAELLNLYAQRAAQ--SGHKFEINELDYQAFADGFGYE 588

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T+ Q +AI  +++D++Q   M R++ GDVG GKT VAL A   AV  G Q  ++AP  +
Sbjct: 589 ETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTL 648

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           L +QH +       +  + V  ++        + ALE +A G   I+IGTH L QD +++
Sbjct: 649 LVEQHAQNFADRFADFPVKVASLSRFNNSKATKAALEGMADGTVDIVIGTHKLVQDDVKF 708

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             L LVI+DE+HRFGV+Q+ +L +      +L MTATPIPRTL +   G  D S IT  P
Sbjct: 709 KNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLITTAP 768

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           + R  +KT + P +    V E +   L  G + +++  +++  +     ++ ER  +L  
Sbjct: 769 SRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVDTIE-----NMRERLEALLP 822

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+ III  A+ FG
Sbjct: 823 E--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFG 880

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRK 629
           LAQLHQLRGRVGR    +   LL    ++K++  RL  +        GF +A +DL+ R 
Sbjct: 881 LAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRG 940

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G +  I L+
Sbjct: 941 AGEILGEGQSG--EMMQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLGITTEIKLH 993


>gi|183179491|ref|ZP_02957702.1| transcription-repair coupling factor [Vibrio cholerae MZO-3]
 gi|183012902|gb|EDT88202.1| transcription-repair coupling factor [Vibrio cholerae MZO-3]
          Length = 1155

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 555  WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 613  AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       +++ L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 673  NFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 733  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +  G + Y++  Q+E         V      L     + I 
Sbjct: 793  TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETID-----KVAADLEKLVPE--ARIT 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   + + L
Sbjct: 965  GEEQSGQI--QSVGFTLYMEMLEQAVEALKS--GKEPALDDLLREQTEVEMRL 1013


>gi|237808985|ref|YP_002893425.1| transcription-repair coupling factor [Tolumonas auensis DSM 9187]
 gi|237501246|gb|ACQ93839.1| transcription-repair coupling factor [Tolumonas auensis DSM 9187]
          Length = 1150

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 161/473 (34%), Positives = 247/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++ +     +A ++  +  ++  +   G+    + +   K     PF  T  Q +
Sbjct: 553  WLKARKKAVEKIRDVAAELLDVYAKRAAR--PGLAFRHDKQAYSKFAAGFPFEETPDQLN 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV AG Q  ++ P  +LAQQHYE
Sbjct: 611  AINSVLGDMCQAKAMDRLVCGDVGFGKTEVAMRATFVAVHAGKQVAVLVPTTLLAQQHYE 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       ++ A+E +A G+  IIIGTH L  + I++  L L++
Sbjct: 671  NFRDRFANWPVNIEVMSRFKSAKEQKAAMEALAEGKIDIIIGTHKLLSEDIRFKDLGLLV 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 731  VDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMALSGMRDLSVIATPPAKRLAIK 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   ++   V E +   L  G + Y++   +E              + L     + IA
Sbjct: 791  TFVRQYDK-AVVREAILRELKRGGQVYYLHNNVETID-----QTAALLSELIPE--ARIA 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM  F +    LL+ TT+IE GIDV  A+ II++ A++ GLAQLHQL
Sbjct: 843  IAHGQMRERDLERVMTDFYHQRYNLLVCTTIIETGIDVPSANTIIMDRADNLGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++K++  RL  +++ ED   GF++A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPHPKQMTKDAVKRLEAIESLEDLGAGFVLATHDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A    K    ++P L  +      I L +
Sbjct: 963  GDEQSGQIESI--GFTLYMEMLEQAVNSLKE--GKEPSLDQLLSDHTDIELRV 1011


>gi|327481347|gb|AEA84657.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri DSM
            4166]
          Length = 1145

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 242/480 (50%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    R+       +A ++  +  R+  ++             +      PF 
Sbjct: 539  HKLGSETWQKAKRKAAEQVRDVAAELLDIYARRAARQG--YAFKDPQVDYETFAAGFPFE 596

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q++AI  + +D+     M R++ GDVG GKT VA+ A   AV  G Q  ++ P  +
Sbjct: 597  ETPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAVLVPTTL 656

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHY   +    +  + VE+++        + A+  +A G+  I+IGTH L QD +++
Sbjct: 657  LAQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAITELADGKIDILIGTHKLLQDDVKF 716

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL ++  G  D+S I   P
Sbjct: 717  SNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIATPP 776

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  ++T ++  N    + E L   L  G + Y++   ++  ++           +L  
Sbjct: 777  ARRLSVRTFVMEANN-PTIKEALLRELLRGGQVYYLHNDVKTIEK-----CAADLQTLVP 830

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IAI HG+M + D E VM  F +    +L+A+T+IE GIDV  A+ IIIE A+ FG
Sbjct: 831  E--ARIAIGHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFG 888

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  P   ++ ++  RL  + N +D   GF++A  DL+ 
Sbjct: 889  LAQLHQLRGRVGRSHHQAYAYLLTPPRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEI 948

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG  QSG          L+  +LE A K  +    + P+L    G    I L L
Sbjct: 949  RGAGELLGEGQSGQI--QAVGFTLYMEMLERAVKAIRK--GEQPNLEQPLGGGPEINLRL 1004


>gi|229515266|ref|ZP_04404726.1| transcription-repair coupling factor [Vibrio cholerae TMA 21]
 gi|229347971|gb|EEO12930.1| transcription-repair coupling factor [Vibrio cholerae TMA 21]
          Length = 1157

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 557  WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 614

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 615  AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 674

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       +++ L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 675  NFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 734

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 735  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 794

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +  G + Y++  Q+E         V      L     + I 
Sbjct: 795  TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETID-----KVAADLEKLVPE--ARIT 846

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 847  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 906

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 907  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 966

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   + + L
Sbjct: 967  GEEQSGQI--QSVGFTLYMEMLEQAVEALKS--GKEPALDDLLREQTEVEMRL 1015


>gi|227111702|ref|ZP_03825358.1| transcription-repair coupling factor [Pectobacterium carotovorum
            subsp. brasiliensis PBR1692]
          Length = 1149

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 237/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G     +    Q    + PF  T  Q  
Sbjct: 550  WSRARQKAAERVRDVAAELLDIYAQRAAK--SGFAFKHDKTQYQLFCESFPFETTPDQAQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + LE    G+  I+IGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFANWPVKIEMISRFRSAREQTQVLEETQEGKVDILIGTHKLLQSDVRWRDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +      G + Y++   +E     N     +R   L     + IA
Sbjct: 788  TFVREYDNL-VVREAILRETLRGGQVYYLYNDVE-----NIEKATQRLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  +S ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAYLLTPNPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  LLE A    K    ++P L  +      + L L
Sbjct: 960  GDDQSGQMT--SVGFSLYMELLESAVDALKA--GREPSLEDLINSQTDVELRL 1008


>gi|148825849|ref|YP_001290602.1| transcription-repair coupling factor [Haemophilus influenzae PittEE]
 gi|148716009|gb|ABQ98219.1| transcription-repair coupling factor [Haemophilus influenzae PittEE]
          Length = 1146

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/480 (33%), Positives = 254/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 545  HKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAK--KGFAFKYDREEFQQFSATFPFE 602

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 603  ETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 662

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGTH L Q  +++
Sbjct: 663  LAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKF 722

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 723  NDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 782

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 783  ARRLSIKTFVRQNDDL-VVREAILREILRGGQVYYLHNDVASIE-----NTAEKLTTLVP 836

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A+HFG
Sbjct: 837  E--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFG 894

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++   GF++A  DL+ 
Sbjct: 895  LAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEI 954

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LL+ A K  K    ++P L  +  Q   I L +
Sbjct: 955  RGAGELLGNEQSGQIESIGFS--LYMELLDAAVKALKE--GREPSLEELTQQQADIELRV 1010


>gi|309972993|gb|ADO96194.1| Transcription-repair coupling factor [Haemophilus influenzae R2846]
          Length = 1146

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/480 (33%), Positives = 253/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 545  HKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAK--KGFAFKYDREEFQQFSATFPFE 602

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 603  ETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 662

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ LE +  G+  I+IGTH L Q  +++
Sbjct: 663  LAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLTEGKVDILIGTHKLIQSDVKF 722

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 723  NDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 782

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 783  ARRLSIKTFVRQNDDL-VVREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVP 836

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A+HFG
Sbjct: 837  E--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFG 894

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++   GF++A  DL+ 
Sbjct: 895  LAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEI 954

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LL+ A K  K    ++P L  +  Q   I L +
Sbjct: 955  RGAGELLGNEQSGQIESIGFS--LYMELLDAAVKALKE--GREPSLEELTQQQADIELRV 1010


>gi|325266091|ref|ZP_08132777.1| transcription-repair coupling factor [Kingella denitrificans ATCC
            33394]
 gi|324982729|gb|EGC18355.1| transcription-repair coupling factor [Kingella denitrificans ATCC
            33394]
          Length = 1258

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/449 (34%), Positives = 236/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 676  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 735

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 736  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 795

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 796  SKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 855

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 856  VDVLTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 914

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 915  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 967

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 968  RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1027

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1028 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 1085

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1086 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1112


>gi|229508016|ref|ZP_04397521.1| transcription-repair coupling factor [Vibrio cholerae BX 330286]
 gi|229511745|ref|ZP_04401224.1| transcription-repair coupling factor [Vibrio cholerae B33]
 gi|229518883|ref|ZP_04408326.1| transcription-repair coupling factor [Vibrio cholerae RC9]
 gi|229607563|ref|YP_002878211.1| transcription-repair coupling factor [Vibrio cholerae MJ-1236]
 gi|229343572|gb|EEO08547.1| transcription-repair coupling factor [Vibrio cholerae RC9]
 gi|229351710|gb|EEO16651.1| transcription-repair coupling factor [Vibrio cholerae B33]
 gi|229355521|gb|EEO20442.1| transcription-repair coupling factor [Vibrio cholerae BX 330286]
 gi|229370218|gb|ACQ60641.1| transcription-repair coupling factor [Vibrio cholerae MJ-1236]
          Length = 1157

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 557  WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 614

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 615  AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 674

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       +++ L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 675  NFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 734

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 735  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 794

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +  G + Y++  Q+E         V      L     + I 
Sbjct: 795  TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETID-----KVAADLEKLVPE--ARIT 846

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 847  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 906

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 907  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 966

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   + + L
Sbjct: 967  GEEQSGQI--QSVGFTLYMEMLEQAVEALKS--GKEPALDDLLREQTEVEMRL 1015


>gi|15641888|ref|NP_231520.1| transcription-repair coupling factor [Vibrio cholerae O1 biovar El
            Tor str. N16961]
 gi|121587314|ref|ZP_01677086.1| transcription-repair coupling factor [Vibrio cholerae 2740-80]
 gi|147674778|ref|YP_001217419.1| transcription-repair coupling factor [Vibrio cholerae O395]
 gi|153823448|ref|ZP_01976115.1| transcription-repair coupling factor [Vibrio cholerae B33]
 gi|227082016|ref|YP_002810567.1| transcription-repair coupling factor [Vibrio cholerae M66-2]
 gi|254848973|ref|ZP_05238323.1| transcription-repair coupling factor [Vibrio cholerae MO10]
 gi|255745354|ref|ZP_05419303.1| transcription-repair coupling factor [Vibrio cholera CIRS 101]
 gi|262153542|ref|ZP_06028671.1| transcription-repair coupling factor [Vibrio cholerae INDRE 91/1]
 gi|262167442|ref|ZP_06035149.1| transcription-repair coupling factor [Vibrio cholerae RC27]
 gi|298498075|ref|ZP_07007882.1| transcription-repair coupling factor [Vibrio cholerae MAK 757]
 gi|9656418|gb|AAF95034.1| transcription-repair coupling factor [Vibrio cholerae O1 biovar El
            Tor str. N16961]
 gi|121548474|gb|EAX58532.1| transcription-repair coupling factor [Vibrio cholerae 2740-80]
 gi|126519037|gb|EAZ76260.1| transcription-repair coupling factor [Vibrio cholerae B33]
 gi|146316661|gb|ABQ21200.1| transcription-repair coupling factor [Vibrio cholerae O395]
 gi|227009904|gb|ACP06116.1| transcription-repair coupling factor [Vibrio cholerae M66-2]
 gi|227013784|gb|ACP09994.1| transcription-repair coupling factor [Vibrio cholerae O395]
 gi|254844678|gb|EET23092.1| transcription-repair coupling factor [Vibrio cholerae MO10]
 gi|255737184|gb|EET92580.1| transcription-repair coupling factor [Vibrio cholera CIRS 101]
 gi|262024139|gb|EEY42833.1| transcription-repair coupling factor [Vibrio cholerae RC27]
 gi|262030669|gb|EEY49304.1| transcription-repair coupling factor [Vibrio cholerae INDRE 91/1]
 gi|297542408|gb|EFH78458.1| transcription-repair coupling factor [Vibrio cholerae MAK 757]
          Length = 1155

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 555  WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 613  AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       +++ L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 673  NFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 733  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +  G + Y++  Q+E         V      L     + I 
Sbjct: 793  TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETID-----KVAADLEKLVPE--ARIT 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   + + L
Sbjct: 965  GEEQSGQI--QSVGFTLYMEMLEQAVEALKS--GKEPALDDLLREQTEVEMRL 1013


>gi|27365411|ref|NP_760939.1| transcription-repair coupling factor [Vibrio vulnificus CMCP6]
 gi|37680549|ref|NP_935158.1| transcription-repair coupling factor [Vibrio vulnificus YJ016]
 gi|27361558|gb|AAO10466.1| transcription-repair coupling factor [Vibrio vulnificus CMCP6]
 gi|37199297|dbj|BAC95129.1| transcription-repair coupling factor [Vibrio vulnificus YJ016]
          Length = 1153

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 246/480 (51%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     WT   R+       +A ++  +  +++ K   G    ++           PF 
Sbjct: 546  HKLGSDAWTRARRKAAEKVRDVAAELLDVYAKRELK--PGYKFVLDRGQYATFKSGFPFE 603

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A +   Q  ++ P  +
Sbjct: 604  ETDDQSMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNDKQVAVLVPTTL 663

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+E  +    N  I VE+++       +++ +E +A+G+  I++GTH L    +++
Sbjct: 664  LAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQIMEDVANGKVDILVGTHKLLSSDLKF 723

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   P
Sbjct: 724  SDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 783

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   +    V E +   +  G + Y++  Q+E  +      V E    L  
Sbjct: 784  ARRLAIKTFVRESDD-AVVREAILREIMRGGQVYFLHNQVETIE-----KVAEDLTKLVP 837

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + I HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A++ G
Sbjct: 838  E--ARVTIAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLG 895

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A  DL+ 
Sbjct: 896  LAQLHQLRGRVGRSHHQAYAYLLTPHPKSMTKDAIKRLDAIASLEDLGAGFTLATHDLEI 955

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  +LE A +  K    ++P L  +  +   + + +
Sbjct: 956  RGAGELLGDEQSGQIQSI--GFTLYMEMLEQAVQALKE--GKEPALDDLLREQTEVEIRI 1011


>gi|229529092|ref|ZP_04418482.1| transcription-repair coupling factor [Vibrio cholerae 12129(1)]
 gi|229332866|gb|EEN98352.1| transcription-repair coupling factor [Vibrio cholerae 12129(1)]
          Length = 1157

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 557  WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 614

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 615  AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 674

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       +++ L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 675  NFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 734

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 735  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 794

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +  G + Y++  Q+E         V      L     + I 
Sbjct: 795  TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETID-----KVAADLEKLVPE--ARIT 846

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 847  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 906

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 907  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 966

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   + + L
Sbjct: 967  GEEQSGQI--QSVGFTLYMEMLEQAVEALKS--GKEPALDDLLREQTEVEMRL 1015


>gi|301169996|emb|CBW29600.1| transcription-repair coupling factor [Haemophilus influenzae 10810]
          Length = 1146

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/480 (33%), Positives = 254/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 545  HKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAK--KGFAFKYDREEFQQFAATFPFE 602

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 603  ETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 662

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGTH L Q  +++
Sbjct: 663  LAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKF 722

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 723  NDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 782

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 783  ARRLSIKTFVRQNDDL-VVREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVP 836

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A+HFG
Sbjct: 837  E--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFG 894

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++   GF++A  DL+ 
Sbjct: 895  LAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEI 954

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LL+ A K  K    ++P L  +  Q   I L +
Sbjct: 955  RGAGELLGNEQSGQIESIGFS--LYMELLDAAVKALKE--GREPSLEELTQQQADIELRV 1010


>gi|153825189|ref|ZP_01977856.1| transcription-repair coupling factor [Vibrio cholerae MZO-2]
 gi|149741168|gb|EDM55219.1| transcription-repair coupling factor [Vibrio cholerae MZO-2]
          Length = 1155

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 555  WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 613  AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       +++ L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 673  NFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 733  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +  G + Y++  Q+E         V      L     + I 
Sbjct: 793  TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETID-----KVAADLEKLVPE--ARIT 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   + + L
Sbjct: 965  GEEQSGQI--QSVGFTLYMEMLEQAVEALKS--GKEPALDDLLREQTEVEMRL 1013


>gi|121727094|ref|ZP_01680268.1| transcription-repair coupling factor [Vibrio cholerae V52]
 gi|121630472|gb|EAX62864.1| transcription-repair coupling factor [Vibrio cholerae V52]
          Length = 1155

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 555  WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 613  AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       +++ L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 673  NFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 733  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +  G + Y++  Q+E         V      L     + I 
Sbjct: 793  TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETID-----KVAADLEKLVPE--ARIT 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   + + L
Sbjct: 965  GEEQSGQI--QSVGFTLYMEMLEQAVEALKS--GKEPALDDLLREQTEVEMRL 1013


>gi|320155796|ref|YP_004188175.1| transcription-repair coupling factor [Vibrio vulnificus MO6-24/O]
 gi|319931108|gb|ADV85972.1| transcription-repair coupling factor [Vibrio vulnificus MO6-24/O]
          Length = 1153

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 246/480 (51%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     WT   R+       +A ++  +  +++ K   G    ++           PF 
Sbjct: 546  HKLGSDAWTRARRKAAEKVRDVAAELLDVYAKRELK--PGYKFVLDRGQYATFKSGFPFE 603

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   A +   Q  ++ P  +
Sbjct: 604  ETDDQSMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNDKQVAVLVPTTL 663

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+E  +    N  I VE+++       +++ +E +A+G+  I++GTH L    +++
Sbjct: 664  LAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQIMEDVANGKVDILVGTHKLLSSDLKF 723

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   P
Sbjct: 724  SDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 783

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   +    V E +   +  G + Y++  Q+E  +      V E    L  
Sbjct: 784  ARRLAIKTFVRESDD-AVVREAILREIMRGGQVYFLHNQVETIE-----KVAEDLTKLVP 837

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + I HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A++ G
Sbjct: 838  E--ARVTIAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLG 895

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A  DL+ 
Sbjct: 896  LAQLHQLRGRVGRSHHQAYAYLLTPHPKSMTKDAIKRLDAIASLEDLGAGFTLATHDLEI 955

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  +LE A +  K    ++P L  +  +   + + +
Sbjct: 956  RGAGELLGDEQSGQIQSI--GFTLYMEMLEQAVQALKE--GKEPALDDLLREQTEVEIRI 1011


>gi|148827037|ref|YP_001291790.1| transcription-repair coupling factor [Haemophilus influenzae PittGG]
 gi|148718279|gb|ABQ99406.1| transcription-repair coupling factor [Haemophilus influenzae PittGG]
          Length = 1146

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/480 (33%), Positives = 254/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 545  HKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAK--KGFAFKYDREEFQQFSATFPFE 602

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 603  ETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 662

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGTH L Q  +++
Sbjct: 663  LAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKF 722

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 723  NDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 782

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 783  ARRLSIKTFVRQNDDL-VVREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVP 836

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A+HFG
Sbjct: 837  E--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFG 894

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++   GF++A  DL+ 
Sbjct: 895  LAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEI 954

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LL+ A K  K    ++P L  +  Q   I L +
Sbjct: 955  RGAGELLGNEQSGQIESIGFS--LYMELLDAAVKALKE--GREPSLEELTQQQADIELRV 1010


>gi|16273176|ref|NP_439413.1| transcription-repair coupling factor [Haemophilus influenzae Rd KW20]
 gi|260581174|ref|ZP_05848994.1| transcription-repair coupling factor [Haemophilus influenzae RdAW]
 gi|1170943|sp|P45128|MFD_HAEIN RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|1574188|gb|AAC22905.1| transcription-repair coupling factor (mfd) [Haemophilus influenzae Rd
            KW20]
 gi|260092202|gb|EEW76145.1| transcription-repair coupling factor [Haemophilus influenzae RdAW]
          Length = 1146

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/480 (33%), Positives = 254/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 545  HKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAK--KGFAFKYDREEFQQFSATFPFE 602

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 603  ETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 662

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGTH L Q  +++
Sbjct: 663  LAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKF 722

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 723  NDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 782

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 783  ARRLSIKTFVRQNDDL-VVREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVP 836

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A+HFG
Sbjct: 837  E--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFG 894

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++   GF++A  DL+ 
Sbjct: 895  LAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEI 954

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LL+ A K  K    ++P L  +  Q   I L +
Sbjct: 955  RGAGELLGNEQSGQIESIGFS--LYMELLDAAVKALKE--GREPSLEELTQQQADIELRV 1010


>gi|254226050|ref|ZP_04919649.1| transcription-repair coupling factor [Vibrio cholerae V51]
 gi|125621433|gb|EAZ49768.1| transcription-repair coupling factor [Vibrio cholerae V51]
          Length = 1155

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 555  WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 613  AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       +++ L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 673  NFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 733  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +  G + Y++  Q+E         V      L     + I 
Sbjct: 793  TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETID-----KVAADLEKLVPE--ARIT 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   + + L
Sbjct: 965  GEEQSGQI--QSVGFTLYMEMLEQAVEALKS--GKEPALDDLLREQTEVEMRL 1013


>gi|188534138|ref|YP_001907935.1| transcription-repair coupling factor [Erwinia tasmaniensis Et1/99]
 gi|188029180|emb|CAO97052.1| Transcription-repair coupling factor (ATP-dependent helicase mfd)
            [Erwinia tasmaniensis Et1/99]
          Length = 1148

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/496 (32%), Positives = 244/496 (49%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S        + P  K     W+   ++       +A ++  +  ++  K   G    
Sbjct: 527  HLISRYAGGAEENAPLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAK--TGFAFK 584

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             + +  Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   
Sbjct: 585  HDKQQYQLFCESFPFETTIDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AVE   Q  ++ P  +LAQQHY+  +    N  I +E+++       + + L     G+ 
Sbjct: 645  AVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPIRIEMMSRFRTAKEQAQVLADAQEGKV 704

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L Q+ I++  L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL 
Sbjct: 705  DILIGTHKLLQNEIKWRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLN 764

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   PA R  +KT +   + +  V E +   +  G + Y++   +E   
Sbjct: 765  MAMSGMRDLSIIATPPARRLAVKTFVREYDDLS-VREAILREVLRGGQVYYLYNDVE--- 820

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              N      R + L     + +AI HG+M + + E VM+ F +    +L+ TT+IE GID
Sbjct: 821  --NIEKAATRLSELVPE--ARVAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 876

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL   P  ++ +++ RL  + + 
Sbjct: 877  IPTANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKSMTTDAHKRLEAIASL 936

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG  QSG  + +     +   LLE A    K    ++P
Sbjct: 937  EDLGAGFALATHDLEIRGAGELLGEGQSGQMETIGFSLYMD--LLENAVDALKE--GREP 992

Query: 672  DLTSVRGQSIRILLYL 687
             L  +      I L +
Sbjct: 993  SLEDLTNSQTDIELRM 1008


>gi|297579403|ref|ZP_06941331.1| transcription-repair coupling factor [Vibrio cholerae RC385]
 gi|297536997|gb|EFH75830.1| transcription-repair coupling factor [Vibrio cholerae RC385]
          Length = 1155

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 555  WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 613  AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       +++ L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 673  NFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKIDILVGTHKLLSSEIRFADLGLLI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 733  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +  G + Y++  Q+E         V     +L     + I 
Sbjct: 793  TFVRQSDD-SVIREAVLREIMRGGQVYFLHNQVETID-----KVAADLENLVPE--ARIT 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   + + L
Sbjct: 965  GEEQSGQI--QSVGFTLYMEMLEQAVEALKS--GKEPALDDLLREQTEVEMRL 1013


>gi|319776143|ref|YP_004138631.1| transcription-repair coupling factor [Haemophilus influenzae F3047]
 gi|317450734|emb|CBY86954.1| transcription-repair coupling factor [Haemophilus influenzae F3047]
          Length = 1146

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 163/480 (33%), Positives = 254/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 545  HKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAK--KGFAFKYDREEFQQFAATFPFE 602

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 603  ETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 662

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGTH L Q  +++
Sbjct: 663  LAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKF 722

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 723  NDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 782

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 783  ARRLSIKTFVRQNDDL-VVREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVP 836

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A+HFG
Sbjct: 837  E--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFG 894

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++   GF++A  DL+ 
Sbjct: 895  LAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEI 954

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LL+ A K  K    ++P L  +  Q   I L +
Sbjct: 955  RGAGELLGNEQSGQIESIGFS--LYMELLDAAVKALKE--GREPSLEELTQQQADIELRV 1010


>gi|145642248|ref|ZP_01797814.1| transcription-repair coupling factor [Haemophilus influenzae R3021]
 gi|145273053|gb|EDK12933.1| transcription-repair coupling factor [Haemophilus influenzae 22.4-21]
          Length = 1160

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 163/480 (33%), Positives = 254/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 559  HKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAK--KGFAFKYDREEFQQFAATFPFE 616

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 617  ETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 676

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGTH L Q  +++
Sbjct: 677  LAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKF 736

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 737  NDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 796

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 797  ARRLSIKTFVRQNDDL-VVREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVP 850

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A+HFG
Sbjct: 851  E--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFG 908

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++   GF++A  DL+ 
Sbjct: 909  LAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEI 968

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LL+ A K  K    ++P L  +  Q   I L +
Sbjct: 969  RGAGELLGNEQSGQIESIGFS--LYMELLDAAVKALKE--GREPSLEELTEQQADIELRV 1024


>gi|325200091|gb|ADY95546.1| transcription-repair coupling factor [Neisseria meningitidis H44/76]
          Length = 1379

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 236/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 802  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 861

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 862  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 921

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 922  SKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 981

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 982  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLSVKTFVKPFSE-GSVREAVLRELK 1040

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 1041 RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 1093

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 1094 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1153

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1154 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 1211

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1212 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1238


>gi|145638829|ref|ZP_01794437.1| transcription-repair coupling factor [Haemophilus influenzae PittII]
 gi|145271801|gb|EDK11710.1| transcription-repair coupling factor [Haemophilus influenzae PittII]
 gi|309750812|gb|ADO80796.1| Transcription-repair coupling factor [Haemophilus influenzae R2866]
          Length = 1146

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 163/480 (33%), Positives = 254/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 545  HKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAK--KGFAFKYDREEFQQFSATFPFE 602

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 603  ETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 662

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGTH L Q  +++
Sbjct: 663  LAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKF 722

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 723  NDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 782

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 783  ARRLSIKTFVRQNDDL-VVREAILREILRGGQVYYLHNDVASIE-----NTAEKLTTLVP 836

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A+HFG
Sbjct: 837  E--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFG 894

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++   GF++A  DL+ 
Sbjct: 895  LAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEI 954

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LL+ A K  K    ++P L  +  Q   I L +
Sbjct: 955  RGAGELLGNEQSGQIESIGFS--LYMELLDAAVKALKE--GREPSLEELTQQQADIELRV 1010


>gi|15677148|ref|NP_274301.1| transcription-repair coupling factor [Neisseria meningitidis MC58]
 gi|7226520|gb|AAF41657.1| transcription-repair coupling factor [Neisseria meningitidis MC58]
          Length = 1379

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 236/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 802  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 861

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 862  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 921

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 922  SKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 981

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 982  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 1040

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 1041 RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 1093

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 1094 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1153

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1154 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 1211

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1212 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1238


>gi|52424271|ref|YP_087408.1| Mfd protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306323|gb|AAU36823.1| Mfd protein [Mannheimia succiniciproducens MBEL55E]
          Length = 1148

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/480 (33%), Positives = 255/480 (53%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    R+       +A ++  +  +++ +   G   +   +   +     PF 
Sbjct: 547  HKLGSDSWAKARRKAAEKIRDVAAELLDVYAQREAQ--KGFAFHYNREEFMQFSATFPFE 604

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE+AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 605  ETHDQEAAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 664

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  +    N  + VE+++       ++K LE ++ G+  I+IGTH L Q  +++
Sbjct: 665  LAQQHYENFRDRFANLPVNVEMVSRFRTAKEQKKILEDLSAGKVDILIGTHKLIQSDVKF 724

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 725  NDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMAMNGIRDLSIISTPP 784

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  + E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 785  ARRLTIKTFVRQADDL-LIREAILREILRGGQVYYLHNDVASIE-----NCAEKLTALVP 838

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I I HG+M + + E VM  F +    +L+ +T+IE GID+  A+ IIIE A+HFG
Sbjct: 839  E--ARIIIGHGQMHERELERVMTDFYHQRFNVLVCSTIIETGIDIPTANTIIIERADHFG 896

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L++ ++   GF++A  DL+ 
Sbjct: 897  LAQLHQLRGRVGRSHHQAYAYLLTPPPKLMTKDAVKRLEALESLDNLGAGFILATHDLEI 956

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LLE A +  K    ++P L  +  Q + I L +
Sbjct: 957  RGAGELLGSEQSGQIESIGFS--LYMELLEAAVQAMKQ--GREPSLDELTQQQVEIDLRI 1012


>gi|212634585|ref|YP_002311110.1| transcription-repair coupling factor [Shewanella piezotolerans WP3]
 gi|212556069|gb|ACJ28523.1| Transcription-repair coupling factor [Shewanella piezotolerans WP3]
          Length = 1158

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/502 (31%), Positives = 252/502 (50%), Gaps = 26/502 (5%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
             L+ + S     EA        K  +  W+   R+ +     +A ++  +  R+Q +   
Sbjct: 536  HLISRYSVGPDEEANLN-----KLGNETWSKAKRKAIEKIRDVAAELLDVYARRQARPGD 590

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                 ++ +   +   + PF  T  QE+AI  +L DM     M R++ GDVG GKT VA+
Sbjct: 591  --ACKIDQEEYAQFASSFPFEETVDQETAITAVLDDMRTPMAMDRLVCGDVGFGKTEVAM 648

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A   AV  G Q  I+ P  +LAQQH+E  +    +    +E+++       + + ++ +
Sbjct: 649  RAAFVAVNDGKQVAILVPTTLLAQQHFENFQDRFADWPFKIEVMSRFKTAKEQNQVMKEL 708

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
              G+  I+IGTH L Q   ++  L L+++DE+HRFGV+Q+ K+        +L +TATPI
Sbjct: 709  TDGKVDIVIGTHKLLQSEAKFENLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPI 768

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            PRTL +   G  D+S I   PA R  +KT +   +    + E L   +  G + Y++   
Sbjct: 769  PRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDD-ATIREALLREILRGGQVYFLHNS 827

Query: 492  IEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +E  +        +R   + E    + +   HG+M + + E VM  F +    +L+ TT+
Sbjct: 828  VETIE--------KRAAEISELLPEARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTI 879

Query: 551  IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL 608
            IE GIDV  A+ I+IE A+ FGLAQLHQLRGRVGR    +   L+   P  ++K++  RL
Sbjct: 880  IETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTKDARKRL 939

Query: 609  SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
              +   ED   GF++A +DL+ R  GE+LG +QSG    +     L+  +LE A K  K 
Sbjct: 940  EAIGALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKI--GFTLYMEMLEDAVKLLKE 997

Query: 666  ILTQDPDLTSVRGQSIRILLYL 687
               ++P L  +  Q   I L +
Sbjct: 998  --GKEPSLDQMLRQQSEIDLRI 1017


>gi|253989203|ref|YP_003040559.1| transcription-repair coupling factor [Photorhabdus asymbiotica subsp.
            asymbiotica ATCC 43949]
 gi|253780653|emb|CAQ83815.1| transcription-repair coupling factor (trcf) [Photorhabdus
            asymbiotica]
          Length = 1148

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +   +  K   G     + +  Q   ++ PF  T  QE 
Sbjct: 549  WSKARQKAAEKVRDVAAELLDIYAHRAVK--PGFAFKHDWEQYQLFCQSFPFETTPDQEQ 606

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ +   A++   Q  ++ P  +LAQQH++
Sbjct: 607  AINAVLDDMCQPIAMDRLVCGDVGFGKTEVAMRSAFLAIQNNKQVAVLVPTTLLAQQHFD 666

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       +++ +E  A G+  IIIGTH L Q ++++  L L+I
Sbjct: 667  NFRDRFANWPVRIEMISRFRSAKEQQQVVEMAAVGKVDIIIGTHKLLQSNLRWKDLGLLI 726

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +      D+S I+  PA R  +K
Sbjct: 727  VDEEHRFGVRHKEQIKAMRADVDILTLTATPIPRTLNMAMSSMRDLSIISTPPARRLAVK 786

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E  +++       R   L     + IA
Sbjct: 787  TFVREYDSL-VVREAMLREILRGGQVYYLYNDVENIEKAKL-----RLEKLVPE--ARIA 838

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM  F +    +LI TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 839  IGHGQMRERDLERVMTDFHHQRFNVLICTTIIETGIDIPSANTIIIERADHFGLAQLHQL 898

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ +++ RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 899  RGRVGRSHHQAYAYLLTPHPKAMTADAHKRLEAIASLEDLGAGFALATHDLEIRGAGELL 958

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG    +     L+  LLE A    K    ++P L  +      + L +
Sbjct: 959  GEEQSGQMTTI--GFTLYMELLESAVDSLKA--GREPSLEDLTNSQTDVELRM 1007


>gi|183599469|ref|ZP_02960962.1| hypothetical protein PROSTU_02948 [Providencia stuartii ATCC 25827]
 gi|188021716|gb|EDU59756.1| hypothetical protein PROSTU_02948 [Providencia stuartii ATCC 25827]
          Length = 1148

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 154/473 (32%), Positives = 240/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     +       +A ++  +  ++  K   G     + +  Q+  +  PF  T  QE 
Sbjct: 549  WGKARHKAAEKVRDVAAELLDIYAQRAAK--PGFAFKHDKEQYQEFCQGFPFETTPDQEQ 606

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A+    Q  ++ P  +LAQQH++
Sbjct: 607  AINAVLSDMCQPIAMDRLVCGDVGFGKTEVAMRAAFLAINNNKQVAVLVPTTLLAQQHFD 666

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       +++ LE  A G+  I+IGTH L Q  + ++ L L++
Sbjct: 667  NFRDRFANWPVRIEMLSRFKTAKEQQQILEETAQGKVDILIGTHKLLQSDLVWHDLGLLV 726

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 727  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 786

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +      G + Y++   +E     N     +R   L     +   
Sbjct: 787  TFVRQYDDL-VVREAILRETLRGGQVYYLYNDVE-----NIEKAKKRLEELVPE--ARFV 838

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +LI TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 839  VGHGQMRERELERVMTDFHHQRFNVLICTTIIETGIDIPTANTIIIERADHFGLAQLHQL 898

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ +++ RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 899  RGRVGRSHHQAYAYLLTPHPKAMTADAHKRLEAISSLEDLGAGFALATHDLEIRGAGELL 958

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     L+  LLE A +  K    ++P L  +  Q   + L +
Sbjct: 959  GEDQSGQMTTI--GFTLYMELLESAVEALKD--GREPSLEDLVNQQTEVELRM 1007


>gi|229523905|ref|ZP_04413310.1| transcription-repair coupling factor [Vibrio cholerae bv. albensis
            VL426]
 gi|229337486|gb|EEO02503.1| transcription-repair coupling factor [Vibrio cholerae bv. albensis
            VL426]
          Length = 1157

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 241/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 557  WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 614

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 615  AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 674

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       +++ L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 675  NFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 734

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 735  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 794

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +        + E +   +  G + Y++  Q+E         V      L     + I 
Sbjct: 795  TFVRQSEN-SVIREAVLREIMRGGQVYFLHNQVETID-----KVAADLEKLVPE--ARIT 846

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 847  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 906

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 907  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 966

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   + + L
Sbjct: 967  GEEQSGQI--QSVGFTLYMEMLEQAVEALKS--GKEPALDDLLREQTEVEMRL 1015


>gi|260913085|ref|ZP_05919567.1| transcription-repair coupling factor [Pasteurella dagmatis ATCC
            43325]
 gi|260632672|gb|EEX50841.1| transcription-repair coupling factor [Pasteurella dagmatis ATCC
            43325]
          Length = 1145

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 253/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W     +       +A ++  +  +++ +   G   N + +  Q+     PF 
Sbjct: 544  HKLGSDAWVKARHKAAEKIRDVAAELLDVYAQREAQ--KGFAFNYDREEFQQFAATFPFE 601

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 602  ETIDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 661

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ ++ +  G+  I+IGTH L Q  +Q+
Sbjct: 662  LAQQHYENFKDRFANLPVNVEVLSRFKTTKEQKQVIQNLEEGKVDILIGTHKLIQSDVQF 721

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            + L L+I+DE+HRFGV+Q+ ++ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 722  HDLGLLIIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMAMHGIRDLSIISTPP 781

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  + E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 782  ARRLTIKTFVKQADDL-VIREAILREILRGGQVYYLHNDVASIE-----NCAEKLTALVP 835

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A++FG
Sbjct: 836  E--ARITVGHGQMRERELERVMSDFYHQRFNVLVCSTIIETGIDVPTANTIIIERADNFG 893

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L++ ++   GF++A  DL+ 
Sbjct: 894  LAQLHQLRGRVGRSHHQAYAYLLTPPPKTMTKDAQKRLEALESLDNLGAGFILATHDLEI 953

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  +       L+  LLE A    K    ++P L  +  Q + I L L
Sbjct: 954  RGAGELLGSEQSGQIE--SVGFSLYMDLLESAVNALKA--GREPSLDELTQQQVEIDLRL 1009


>gi|260582935|ref|ZP_05850719.1| transcription-repair coupling factor [Haemophilus influenzae NT127]
 gi|260094035|gb|EEW77939.1| transcription-repair coupling factor [Haemophilus influenzae NT127]
          Length = 1146

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 162/476 (34%), Positives = 253/476 (53%), Gaps = 19/476 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF  T  
Sbjct: 549  NEAWVKSRQKAAEKIRDVAAELLDVYAQREAK--KGFAFKYDREEFQQFAATFPFEETYD 606

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQ
Sbjct: 607  QEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQ 666

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            HYE  K    N  + VE+++       +++ LE +A G+  I+IGTH L Q  +++  L 
Sbjct: 667  HYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLG 726

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  PA R 
Sbjct: 727  LLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRL 786

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             IKT +   + +  V E +   +  G + Y++   +   +     +  E+  +L     +
Sbjct: 787  SIKTFVRQNDDL-VVREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVPE--A 838

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A+HFGLAQL
Sbjct: 839  RVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQL 898

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++   GF++A  DL+ R  G
Sbjct: 899  HQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAG 958

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            E+LG +QSG  + +     L+  LL+ A K  K    ++P L  +  Q   I L +
Sbjct: 959  ELLGNEQSGQIESIGFS--LYMELLDAAVKALKE--GREPSLEELTQQQADIELRV 1010


>gi|212712824|ref|ZP_03320952.1| hypothetical protein PROVALCAL_03921 [Providencia alcalifaciens DSM
            30120]
 gi|212684516|gb|EEB44044.1| hypothetical protein PROVALCAL_03921 [Providencia alcalifaciens DSM
            30120]
          Length = 1148

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 158/496 (31%), Positives = 242/496 (48%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S        + P  K     W    ++       +A ++  +  ++  K   G    
Sbjct: 526  HLISRYAGGADENAPLHKLGSDSWGRARQKAAEKVRDVAAELLDIYAQRAAK--AGFAFK 583

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             + +  Q+  +  PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   
Sbjct: 584  HDKEQYQEFCQGFPFETTPDQEMAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 643

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A+    Q  ++ P  +LAQQHY+  +    N  + +E+++       +++ +   A G+ 
Sbjct: 644  AINNNKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFKTAKEQQQIIAEAAEGKV 703

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L Q  IQ+  L L++VDE+HRFGV+ + ++        +L +TATPIPRTL 
Sbjct: 704  DILIGTHKLLQSDIQWKDLGLLVVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLN 763

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   PA R  +KT +   + +  V E +      G + Y++   +E   
Sbjct: 764  MAMSGMRDLSIIATPPARRLAVKTFVRQYDDL-VVREAILRETLRGGQVYYLYNDVE--- 819

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              N      R  +L     +   + HG+M + + E VM  F +    +LI TT+IE GID
Sbjct: 820  --NIEKAKARLETLVPE--ARFVVGHGQMRERELERVMTDFHHQRFNVLICTTIIETGID 875

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL   P  ++ ++  RL  + + 
Sbjct: 876  IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTTDAQKRLEAISSL 935

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG  QSG    +     L+  LLE A    K    ++P
Sbjct: 936  EDLGAGFALATHDLEIRGAGELLGEDQSGQMTTI--GFTLYMELLESAVDALKE--GREP 991

Query: 672  DLTSVRGQSIRILLYL 687
             L  +  Q   + L +
Sbjct: 992  SLEDLTHQQTEVELRM 1007


>gi|322833632|ref|YP_004213659.1| transcription-repair coupling factor [Rahnella sp. Y9602]
 gi|321168833|gb|ADW74532.1| transcription-repair coupling factor [Rahnella sp. Y9602]
          Length = 1147

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/460 (34%), Positives = 238/460 (51%), Gaps = 19/460 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   ++       +A ++  +  +++ K   G     +    Q   +  PF  T  Q  
Sbjct: 550 WSKARQKAAEKVRDVAAELLDIYAQREAK--SGFAFKHDKAQYQLFCQAFPFETTPDQAQ 607

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM+Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 608 AINAVLTDMTQPLAMDRLVCGDVGFGKTEVAMRAAFLAVSNNKQVAVLVPTTLLAQQHFD 667

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    +  + +E+++       +   LE    G+  IIIGTH L Q  +++  L L+I
Sbjct: 668 NFRDRFASWPVRIEMMSRFRSAKEQNVVLEDAVEGKVDIIIGTHKLLQTDLRWKDLGLLI 727

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728 VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRMAVK 787

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  V E +   +  G + Y++   +E     N     +R   L     + IA
Sbjct: 788 TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIEKASQRLAELVPE--ARIA 839

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840 IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL  PP  +S +++ RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900 RGRVGRSHHQAYAYLLTPPPKAMSADAHKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           G  QSG    +     L+  LLE A +  K    ++P L 
Sbjct: 960 GEGQSGQMTSIGFS--LYMELLENAVEALKE--GREPSLE 995


>gi|23008733|ref|ZP_00050052.1| COG1200: RecG-like helicase [Magnetospirillum magnetotacticum MS-1]
          Length = 380

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 194/382 (50%), Positives = 275/382 (71%), Gaps = 2/382 (0%)

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T VAL+AMA+AVEAG QA +MAP  ILA+QHYE +       ++   ++TG    A RR 
Sbjct: 1   TAVALLAMASAVEAGRQAALMAPTEILARQHYERLVPLAGAMRLR--LLTGRDKAAERRA 58

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            L  +A G+  I++GTHALFQ+++ +  L L +VDEQHRFGV QRL L  K  A  +L+M
Sbjct: 59  TLADLAAGEIDIVVGTHALFQEAVAFRDLGLAVVDEQHRFGVHQRLALGAKGEAVDILVM 118

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL LT  GD+D+S + EKPAGR+PIKT+ +P+ RIDEV++ L   L+ G + Y
Sbjct: 119 TATPIPRTLALTFFGDMDVSVLDEKPAGRQPIKTITVPVERIDEVVDGLHRALAAGDRVY 178

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           WICP + E +  +  +  ERF+ L +HF   + +IHG+M   +K++ M++F  G  ++L+
Sbjct: 179 WICPLVAESEYVDLAAAAERFDDLRKHFGDQVGLIHGKMPGPEKDAAMEAFAAGRTRVLV 238

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +TTV+EVG+DV +A+I++IE+AE FGLAQLHQLRGRVGRG + SSC+LLY  PL + +  
Sbjct: 239 STTVVEVGVDVPEATIMVIEHAERFGLAQLHQLRGRVGRGSKASSCLLLYRGPLGQVAKA 298

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           RL +++ +EDGF IAEEDL+ R EGE+LG +QSGM  F +A+ E   +LLE AR DA+ I
Sbjct: 299 RLEMMRASEDGFRIAEEDLRLRGEGEVLGTRQSGMAAFRLARLESDGALLEAARDDARLI 358

Query: 667 LTQDPDLTSVRGQSIRILLYLY 688
           + +DP ++S RG+++R+L+YL+
Sbjct: 359 VERDPRVSSERGRALRVLIYLF 380


>gi|114563569|ref|YP_751082.1| transcription-repair coupling factor [Shewanella frigidimarina NCIMB
            400]
 gi|114334862|gb|ABI72244.1| transcription-repair coupling factor [Shewanella frigidimarina NCIMB
            400]
          Length = 1178

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/476 (32%), Positives = 250/476 (52%), Gaps = 19/476 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  W    ++ +     +A ++  +  R+Q +      ++++ +   +  +  PF  T  
Sbjct: 571  NETWAKAKKKAIERIRDVAAELLDVYARRQARPGD--AMSIDEEEYAQFSQGFPFEETVD 628

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            QESAI  +L+DM     M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQ
Sbjct: 629  QESAIHAVLEDMQAPRAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQ 688

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            HYE  K    +  I++E+++       +   +E+++ G+  I+IGTH L      +  L 
Sbjct: 689  HYENFKDRFADWPIVIEVMSRFRTAKEQSSVVEQLSEGKVDIVIGTHKLLSSEANFDNLG 748

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+++DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R 
Sbjct: 749  LLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRL 808

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             +KT +   ++     E +   +  G + Y++   +E   E   +++ +          +
Sbjct: 809  AVKTFVREYDK-ATAREAILREILRGGQVYYLHNNVETI-EKTAQNIRDLLPE------A 860

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             +   HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ III+ A+ FGLAQL
Sbjct: 861  RVITAHGQMRERDLEKVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIDRADMFGLAQL 920

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR    +   ++   P  ++ ++  RL+ ++  ED   GFL+A +DL+ R  G
Sbjct: 921  HQLRGRVGRSHHQAYAYMMTPHPKRMTPDARKRLAAIEALEDLGAGFLLATQDLEIRGAG 980

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            E+LG +QSG    +     L+  +LE A K  K    ++P L  +      I L +
Sbjct: 981  ELLGDEQSGHISKIGFS--LYMEMLESAVKALKE--GKEPSLAYMMSAKAEIDLRI 1032


>gi|238791842|ref|ZP_04635479.1| Transcription-repair-coupling factor [Yersinia intermedia ATCC 29909]
 gi|238728946|gb|EEQ20463.1| Transcription-repair-coupling factor [Yersinia intermedia ATCC 29909]
          Length = 1148

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 241/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++       +A ++  +  ++  K   G     + +  Q   ++ PF  T  QE 
Sbjct: 550  WGRARQKAAEKVRDVAAELLDIYAQRAAK--SGFKFKHDREQYQLFCQSFPFETTPDQEQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM +   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       + +E+++       ++  LE+ A G+  IIIGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFATWPVRIEMMSRFRSAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWQDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  + E +   +  G + Y++   +E     N     +R   L     + IA
Sbjct: 788  TFVREYDSL-VIREAILREILRGGQVYYLYNDVE-----NIEKATQRLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     L+  LLE A    K    ++P L  +      I L +
Sbjct: 960  GEDQSGQMTTIGFS--LYMELLESAVDALKE--GREPSLEDLTSNQTEIELRM 1008


>gi|302388692|ref|YP_003824513.1| transcription-repair coupling factor [Thermosediminibacter oceani DSM
            16646]
 gi|302199320|gb|ADL06890.1| transcription-repair coupling factor [Thermosediminibacter oceani DSM
            16646]
          Length = 1177

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 144/475 (30%), Positives = 235/475 (49%), Gaps = 22/475 (4%)

Query: 210  HNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
              P K       EW           + +A ++  L   +Q     G   + +    ++  
Sbjct: 565  DRPPKLNKLGSSEWAKAKTRVKESVKEMAKELLELYAARQA--MKGFAFSPDTVWQKEFE 622

Query: 267  RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
               P+  T  Q +AI+++ +DM     M R+L GDVG GKT VAL A   AV    Q  +
Sbjct: 623  DLFPYEETPDQLTAIEEVKRDMESDKCMDRLLCGDVGYGKTEVALRAAFKAVMDAKQVAV 682

Query: 327  MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            + P  ILA+QHY    +      + VE+I+    +A ++  ++ + +G   IIIGTH L 
Sbjct: 683  LVPTTILAEQHYRTFSERFAPFPVRVEVISRFKSKAEQKAIIKDLKNGAIDIIIGTHRLL 742

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            Q  +++  L L+I+DE+ RFGV  + K+ Q      VL MTATPIPRTL +   G  D+S
Sbjct: 743  QKDVKFKDLGLLIIDEEQRFGVSHKEKIKQLKKNVDVLTMTATPIPRTLHMAMTGIRDMS 802

Query: 447  KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
             +   P  R PI+T ++  +    + + +   LS G + Y++  ++    E       +R
Sbjct: 803  VMETPPENRYPIQTYVVEYSD-SLIRDAIMRELSRGGQVYYVYNRVNTIYE-----EAKR 856

Query: 507  FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             ++L     + IA+ HG+M + + E VM  F      +L+ TT+IE G+D+ + + +I+ 
Sbjct: 857  LSALVPE--ARIAVAHGQMHENELEEVMMDFYEHRYDVLVCTTIIETGLDIPNVNTLIVI 914

Query: 567  NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIA 621
            +A+ FGL+QL+QLRGRVGR    +     Y     LS+ +  RL+ +++  +   GF IA
Sbjct: 915  SADRFGLSQLYQLRGRVGRSSTQAFAYFTYKKDKTLSEAAEKRLAAIRDFTEFGAGFKIA 974

Query: 622  EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
              DL+ R  G ILG +Q G    +     L+  LL  A ++ +     +P+    
Sbjct: 975  LRDLEIRGAGNILGTEQHGHMMTVGYD--LYCKLLAEAVRELRS--EPEPEEVQP 1025


>gi|332141064|ref|YP_004426802.1| transcription-repair coupling factor [Alteromonas macleodii str.
            'Deep ecotype']
 gi|327551086|gb|AEA97804.1| transcription-repair coupling factor [Alteromonas macleodii str.
            'Deep ecotype']
          Length = 1165

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 164/496 (33%), Positives = 242/496 (48%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNPRKA-KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     +    P  A     WT   ++       +A ++  +  R+  K      IN
Sbjct: 545  HLISRYTGGDADSAPVSALGSDAWTKAKQKAAEKVRDVAAELLDVYARRAAKPGFEYKIN 604

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             +    Q    + PF  T  Q  AI  ++ DM   + M R++ GDVG GKT VA+ A   
Sbjct: 605  WDD--YQAFADSFPFEETPDQAQAIAAVMHDMGSPSAMDRLVCGDVGFGKTEVAMRAAFL 662

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A  AG Q  I+ P  +LAQQHYE  K         +E+++  +    ++  +ERI  G+ 
Sbjct: 663  AANAGKQVAILVPTTLLAQQHYENFKDRFAAWPFEIEVMSRFVSGKAQKSVVERIGEGKV 722

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I++GTH L    I+Y  L LVI+DE+HRFGV+Q+ KL        +L +TATPIPRTL 
Sbjct: 723  DIVVGTHKLLSSDIKYKDLGLVIIDEEHRFGVRQKEKLKSLRADVDILTLTATPIPRTLN 782

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   PA R  IKT +   N+   + E +   +  G + Y++  ++E   
Sbjct: 783  MALSGMRDLSIIATAPARRLSIKTFVQQRNK-AVIREAIMREILRGGQVYFLHNEVESI- 840

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                   VE    +     + IA+ HG+M + + ESVM  F +    +L+ TT+IE GID
Sbjct: 841  ----ARTVEEIAEIVPE--ARIAMGHGQMRERELESVMSDFYHQRYNVLVCTTIIETGID 894

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            V  A+ II++ A+H GLAQLHQLRGRVGR    +   LL   P  ++K++  RL  +   
Sbjct: 895  VPSANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISQL 954

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG  QSG          L+  +L+ A    K    ++P
Sbjct: 955  EDLGAGFALATHDLEIRGAGELLGDDQSGQI--ASVGFSLYMDMLDKAVNALKD--GREP 1010

Query: 672  DLTSVRGQSIRILLYL 687
             L         + L +
Sbjct: 1011 SLDDAMSGHTEVELRI 1026


>gi|213583692|ref|ZP_03365518.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 468

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 154/451 (34%), Positives = 234/451 (51%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 23  WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 80

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 81  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 140

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 141 NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 200

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 201 VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 260

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 261 TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 312

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 313 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 372

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 373 RGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 432

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG  + +     L+  LLE A    K 
Sbjct: 433 GEEQSGSMETIGFS--LYMELLENAVDALKA 461


>gi|126664951|ref|ZP_01735934.1| transcription-repair coupling protein Mfd [Marinobacter sp. ELB17]
 gi|126630321|gb|EBA00936.1| transcription-repair coupling protein Mfd [Marinobacter sp. ELB17]
          Length = 1169

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/496 (32%), Positives = 253/496 (51%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     +  H P  K     W +  ++ L      A ++  +  R++ +   G   +
Sbjct: 544  HLISRYAGSDTEHAPLHKLGTDRWNTAKKKALEKIRDTAAELLDVYARREAR--KGFSFD 601

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
               +  +      PF  T  QE AI+ +L+DM+ +  M R++ GDVG GKT VA+ A   
Sbjct: 602  NPQEAYRTFAAGFPFEETPDQEVAIQAVLEDMTSERPMDRLVCGDVGFGKTEVAMRAAFV 661

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A  +G Q  ++ P  +LAQQHYE  +    +T + +E+++     +   KALE + +G+A
Sbjct: 662  ATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTAVNIELLSRFRSGSQTNKALEAMENGKA 721

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L Q +I++  L LVI+DE+HRFGVQQ+ KL        +L +TATPIPRTL 
Sbjct: 722  DIVIGTHKLLQGNIRFKNLGLVIIDEEHRFGVQQKEKLKALRAEVDMLNLTATPIPRTLN 781

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +      D+S I   PA R  +KT +   +    V E +   +  G + Y++   +   +
Sbjct: 782  MAMGHLRDLSIIATPPARRLSVKTFVRQRDE-PMVKEAILREILRGGQVYFLHNNVTSIE 840

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            ++         +       + + + HG+M + D E +M  F +    +L+ TT+IE GID
Sbjct: 841  KT-------AADLRQLIPEARVGVAHGQMRERDLEQIMTDFYHKRFNVLVCTTIIETGID 893

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            V  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL  PP  +S ++  RL  +   
Sbjct: 894  VPTANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAISSDAKKRLEAISEA 953

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            +D   GF++A +DL+ R  GE+LG +QSG  + +     L+  LL+ A K  +    + P
Sbjct: 954  QDLGAGFMLATQDLEIRGAGELLGEEQSGQIESI--GFTLYMQLLDEAVKAIRE--GRTP 1009

Query: 672  DLTSVRGQSIRILLYL 687
            +          + L +
Sbjct: 1010 NAELPLSHGTEMNLRI 1025


>gi|269139412|ref|YP_003296113.1| transcription-repair coupling factor (superfamily II helicase)
            [Edwardsiella tarda EIB202]
 gi|267985073|gb|ACY84902.1| transcription-repair coupling factor (superfamily II helicase)
            [Edwardsiella tarda EIB202]
 gi|304559308|gb|ADM41972.1| Transcription-repair coupling factor [Edwardsiella tarda FL6-60]
          Length = 1178

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 162/473 (34%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT   ++       +A ++  +   +  K   G     + +  Q   +  PF  T  QE 
Sbjct: 581  WTRARQKAAEKVRDVAAELLDIYAMRAAK--AGFAFRHDREAYQLFCQGFPFETTADQEI 638

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQHY+
Sbjct: 639  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVHSGKQVAVLVPTTLLAQQHYD 698

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L   A G+  I+IGTH L Q+ +Q+  L L+I
Sbjct: 699  NFRDRFANWPVRIELISRFRSAKEQAQVLADTADGKVDILIGTHKLLQNDVQWSDLGLLI 758

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 759  VDEEHRFGVRQKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRMAVK 818

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +      G + Y++   ++       +   +R  +L     + IA
Sbjct: 819  TFVREYDSL-VVREAILRETLRGGQVYYLYNDVDTI-----QKAADRLATLVPE--ARIA 870

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 871  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 930

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 931  RGRVGRSYHQAYAYLLTPPPKAMTVDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 990

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 991  GDDQSGQM--ASVGFSLYMELLESAVTALKE--GREPSLEDLTSQQTEVELRM 1039


>gi|325136213|gb|EGC58821.1| transcription-repair coupling factor [Neisseria meningitidis M0579]
          Length = 1296

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/453 (33%), Positives = 238/453 (52%), Gaps = 17/453 (3%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  L  R+  +   G    +     Q       +  T+ Q +AI  +++D++Q   M R
Sbjct: 717  ELLNLYARRAAQ--SGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDR 774

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++
Sbjct: 775  LVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLS 834

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                    + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +
Sbjct: 835  RFNNSKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKR 894

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                  +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E + 
Sbjct: 895  LRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVL 953

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              L  G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  
Sbjct: 954  RELKRGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRD 1006

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F      +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL 
Sbjct: 1007 FLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLT 1066

Query: 597  HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
               ++K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+ 
Sbjct: 1067 PEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYT 1124

Query: 654  SLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             +L+ A +D K    + PDL +  G +  I L+
Sbjct: 1125 EMLKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1155


>gi|68250212|ref|YP_249324.1| transcription-repair coupling factor [Haemophilus influenzae
            86-028NP]
 gi|68058411|gb|AAX88664.1| transcription-repair coupling factor [Haemophilus influenzae
            86-028NP]
          Length = 1146

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 163/480 (33%), Positives = 253/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 545  HKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAK--KGFAFKYDREEFQQFSATFPFE 602

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 603  ETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 662

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGTH L Q  +++
Sbjct: 663  LAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKF 722

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 723  NDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 782

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +     +  V E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 783  ARRLSIKTFVRQNGDL-VVREAILREILRGGQVYYLHNDVASIE-----NTAEKLTTLVP 836

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A+HFG
Sbjct: 837  E--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFG 894

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++   GF++A  DL+ 
Sbjct: 895  LAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEI 954

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LL+ A K  K    ++P L  +  Q   I L +
Sbjct: 955  RGAGELLGNEQSGQIESIGFS--LYMELLDAAVKALKE--GREPSLEELTQQQADIELRV 1010


>gi|113970068|ref|YP_733861.1| transcription-repair coupling factor [Shewanella sp. MR-4]
 gi|113884752|gb|ABI38804.1| transcription-repair coupling factor [Shewanella sp. MR-4]
          Length = 1160

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 248/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     + +     +A ++  +  R+Q +       ++  +   +  +  PF  T  QES
Sbjct: 560  WAKAKNKAIEKIRDVAAELLDVYARRQARPGE--SCDINDEEYAQFAQGFPFEETVDQES 617

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQHYE
Sbjct: 618  AIHAVLADMQSPVAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYE 677

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  +++E+++       + + L+++  G+  I+IGTH L Q   ++  L L+I
Sbjct: 678  NFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLGLLI 737

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 738  IDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVK 797

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    V E +   +  G + Y++   +E  +        +  ++L     + + 
Sbjct: 798  TFVRESD-PATVREAILREILRGGQVYYLHNNVETIE-----KCAQDISTLLPE--ARVV 849

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 850  VAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQL 909

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   L+   P  ++ ++  RL  +   ED   GF++A +DL+ R  GE+L
Sbjct: 910  RGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELL 969

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG    +     L+  +LE A K  K  L ++P L  +  Q   + L +
Sbjct: 970  GDEQSGHISKIGFS--LYMEMLESAVKALK--LGKEPSLAQMLNQQCEMELRI 1018


>gi|258621368|ref|ZP_05716402.1| transcription-repair coupling factor [Vibrio mimicus VM573]
 gi|258586756|gb|EEW11471.1| transcription-repair coupling factor [Vibrio mimicus VM573]
          Length = 1156

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 555  WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 613  AINAVLSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       ++  L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 673  NFRDRFANLPIRVEVLSRFKSAKEQKLILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 733  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +  G + Y++  Q+E         V      L     + + 
Sbjct: 793  TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETID-----KVAADLEKLVPE--ARVT 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A    K    ++P L  +  +   + + L
Sbjct: 965  GEEQSGQIQSI--GFTLYMEMLEQAVDALKS--GKEPALDDLLREQTEVEMRL 1013


>gi|125975114|ref|YP_001039024.1| transcription-repair coupling factor [Clostridium thermocellum ATCC
            27405]
 gi|125715339|gb|ABN53831.1| transcription-repair coupling factor [Clostridium thermocellum ATCC
            27405]
          Length = 1178

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 143/454 (31%), Positives = 240/454 (52%), Gaps = 19/454 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + LA ++  L    Q +   G     +    ++     P+  T+ Q 
Sbjct: 580  DWAKTRARTKESLKELAQELINLYA--QREMAEGHAFGKDTVWQKQFEDLFPYQETEDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I++I +DM     M R+L GDVG GKT VA+ A+  AV  G Q   + P  +LAQQHY
Sbjct: 638  RCIEEIKRDMESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMDGKQVAYLVPTTVLAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+  ++  I VE+++    QA +++ L+ +  G   ++IGTH L Q  + +  L L+
Sbjct: 698  NTFKERMKDFPITVEVLSRFRTQAEQKRILKDVKAGMVDVLIGTHRLLQKDVCFKDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV  + K+ +  T   VL +TATPIPRTL ++ +G  DIS I E P  R P+
Sbjct: 758  VIDEEQRFGVTHKEKIKRMKTNIDVLTLTATPIPRTLHMSLVGIRDISTIEEPPEERYPV 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T ++  N  + V + +   +S G + +++  ++        R++ ++   + +    + 
Sbjct: 818  QTYVMEYND-EVVRDAINREMSRGGQVFYLYNRV--------RAINQKAAEIQKLVPEAR 868

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +AI HG+M++ + E++M  F NG   +L+ TT+IE G+D+ + + II+E+A+  GLAQL+
Sbjct: 869  VAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVEDADKMGLAQLY 928

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++   + Y     LS+ +  RL  +K       GF IA  DL+ R  G 
Sbjct: 929  QLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAMRDLQLRGAGN 988

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            +LG +Q G    +     ++  LL  A  + + I
Sbjct: 989  LLGPQQHGHIDSVGYD--MYCKLLAEAVNELRGI 1020


>gi|262404233|ref|ZP_06080788.1| transcription-repair coupling factor [Vibrio sp. RC586]
 gi|262349265|gb|EEY98403.1| transcription-repair coupling factor [Vibrio sp. RC586]
          Length = 1155

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 555  WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 613  AINAVLSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       ++  L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 673  NFRDRFANLPIRVEVLSRFKSAKEQKLILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 733  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +  G + Y++  Q+E         V      L     + + 
Sbjct: 793  TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETID-----KVAADLEKLVPE--ARVT 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A    K    ++P L  +  +   + + L
Sbjct: 965  GEEQSGQIQSI--GFTLYMEMLEQAVDALKS--GKEPALDDLLREQTEVEMRL 1013


>gi|172040463|ref|YP_001800177.1| ATP-dependent DNA helicase [Corynebacterium urealyticum DSM 7109]
 gi|171851767|emb|CAQ04743.1| ATP-dependent DNA helicase [Corynebacterium urealyticum DSM 7109]
          Length = 742

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 199/741 (26%), Positives = 340/741 (45%), Gaps = 83/741 (11%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGY---IS 77
              +  L+          +   D+L   P+ +       ++  +    + T       + 
Sbjct: 16  PDRAKSLA-----DKPGLSTLQDVLLTFPTRYARLGTSDQLDMLVPGEMYTCVAQILGVE 70

Query: 78  QHSSFQLQKRRPY-KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
           Q  +F  +  R + +    DG+ ++    F      L  V   G  + + GK+   +N+ 
Sbjct: 71  QKENFSGRGPRTFIRFRFTDGSVQMESALFGNPKMHL-GVIQPGAILLLHGKLDTFRNQW 129

Query: 137 IMVHPHYIFHN-------------------------SQDVNFPLIEAVYSLPTGLSVDLF 171
            + +P Y   +                         +Q++        Y    G S    
Sbjct: 130 QLKNPSYATIDPGLSARFGAYGSLKTIVTIAGSQEAAQELLRMPYLPGYPRKRGTSTAEL 189

Query: 172 KKIIVEAL-------SRLPVLPEWIE-----------------------KDLLQKKSFPS 201
             ++ + L            +PE +                           +       
Sbjct: 190 IGVVDQILRGPLAPTPGGETIPEMLPDPTAPGTSGDVVGGEASDSVPAWPTGVDGAPLIR 249

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV-EGK 260
              A   IH P +    E    A ERL ++E L  Q+ + L      +     ++    +
Sbjct: 250 FDAALRGIHQPPE----EGPGAAIERLKFNEALELQLIMALRAADATRRTSPRVDALHSE 305

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +    + ++P+  ++ Q+SA   + + +        +LQGDVGSGKTL+A +AM AA +A
Sbjct: 306 LLAAFIHSLPYRLSEGQKSAWDRVAEALDSSEPANLMLQGDVGSGKTLIAALAMVAAADA 365

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q   +AP  +LA QH + + +  +   I + ++TG+     R ++L  I  GQAHI++
Sbjct: 366 GLQCAFIAPTEVLAVQHAQTLTRLVEGLPITITVLTGSQSSDVRHRSLLDIISGQAHIVV 425

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVL 437
           GTHAL QDS++++ L LV+VDEQHRFGV+QR  L  KA     PH+L+MTATPIPR++ +
Sbjct: 426 GTHALIQDSVEFFNLGLVVVDEQHRFGVRQRDYLKNKAAAGKTPHMLVMTATPIPRSVAM 485

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQIEE 494
           T  GD++   +   P+GR  ++T ++   R    D + +R+   ++ G +A+ + P+IE 
Sbjct: 486 TMFGDLEPIFLPGLPSGRGEVRTAVVQAGRRAWVDRMWQRISEDVAAGHQAFVVVPRIE- 544

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             E    +  E+  S       ++ ++HG+M+  +K + M  F  G   +L+ATTVIEVG
Sbjct: 545 -GEDGVLAWAEKLAS-GPLAHCTVDVLHGKMAPEEKAAAMAGFAEGRTDVLVATTVIEVG 602

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +A++++I +AE+FG++QLHQLRGR+GRG     C+L         SY RL  +  T
Sbjct: 603 VDVPNATVMVIIDAENFGVSQLHQLRGRIGRGSADGWCMLHTTALPGSASYDRLESVAAT 662

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQS--GMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            DGF +AE DL+QR EG+ILG  QS  G  +  +        ++  A+  A+ ++ +  +
Sbjct: 663 TDGFALAELDLEQRTEGDILGDDQSGAGSRRARLLNLASDGEIIMRAKDYARELVEKQEE 722

Query: 673 LTSVRGQSIRILLYLYQYNEA 693
           L   R     I L   +Y + 
Sbjct: 723 LA--RRLVADIELEDQEYIQR 741


>gi|333024198|ref|ZP_08452262.1| putative ATP-dependent DNA helicase RecG [Streptomyces sp. Tu6071]
 gi|332744050|gb|EGJ74491.1| putative ATP-dependent DNA helicase RecG [Streptomyces sp. Tu6071]
          Length = 775

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/515 (29%), Positives = 257/515 (49%), Gaps = 36/515 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL     +G   +  +++ +           DLL ++P  + +R    +++E+  + 
Sbjct: 4   LDEPLKKV--LGPPTAKVMAEHL-----GLHTVGDLLHHYPRRYAERGELTRLAELPLDE 56

Query: 69  IVTITGYIS--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            VT+   ++  +  +F   + +  ++ + DG+G + L+FF R     ++    G +    
Sbjct: 57  HVTVVARVADARVHTFNAGRGKRLEVTITDGSGRLQLVFFGRGVHKPQHDLLPGTRAMFA 116

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVN-------FPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           GK+     ++ + HP Y     +             +  +Y     L      K +   L
Sbjct: 117 GKVSVFNRKLQLAHPAYELLAEESDAREAAGTWASSLLPIYPATAKLESWKIAKAVDAVL 176

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
                  + +   L + +    + EA   IH P+   + E     R+RL +DE    Q A
Sbjct: 177 PSANEALDPLPDSLREGRGLLPLPEALVKIHRPQSKTEVEAA---RDRLKWDEAFVLQTA 233

Query: 240 LLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L   R    +   +P       +       +PF+ T+ Q+   ++I  D++  + M R+L
Sbjct: 234 LARRRHADAQLPAVPRCPAPDGLLAAFDARLPFTLTEGQQKVSREIFDDLATDHPMHRLL 293

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT-----------QN 347
           QG+VGSGKT+VAL AM A V+AGGQA ++AP  +LAQQH+  I +               
Sbjct: 294 QGEVGSGKTMVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSITEMMGDLASGGTLGAAE 353

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
               V ++TG++  A RRKAL  +  G+A ++IGTHAL +D ++++ L LV+VDEQHRFG
Sbjct: 354 HATGVVLLTGSLGAAARRKALLDLVTGEAGVVIGTHALIEDVVKFHDLGLVVVDEQHRFG 413

Query: 408 VQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           V+QR  L  + A  PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI T ++P  
Sbjct: 414 VEQRDALRSKGAQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAQ 473

Query: 467 R----IDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                +    ER++  ++ G +AY +CP+I +++E
Sbjct: 474 DKPHFLARAWERVREEVAAGHQAYVVCPRIGDEEE 508


>gi|330502559|ref|YP_004379428.1| transcription-repair coupling factor [Pseudomonas mendocina NK-01]
 gi|328916845|gb|AEB57676.1| transcription-repair coupling factor [Pseudomonas mendocina NK-01]
          Length = 1145

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 239/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q++
Sbjct: 549  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--FAFQDPAVDYATFSAGFPFEETPDQQT 606

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQHY 
Sbjct: 607  AIDAVRNDMLAGKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAVLVPTTLLAQQHYN 666

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A++++A G+  I+IGTH L QD ++++ L LVI
Sbjct: 667  SFRDRFADWPVKVEVMSRFKSAKEVEGAVQQLAEGKVDIVIGTHKLLQDDVKFHNLGLVI 726

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 727  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVR 786

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   + E L   L  G + Y++   ++  +             L     + I 
Sbjct: 787  TFVMEENK-PTIKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 838

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM  F +    +L+A+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 839  IGHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQL 898

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   +++++  RL  +   +D   GF++A  DL+ R  GE+L
Sbjct: 899  RGRVGRSHHQAYAYLLTPPRKSMTEDAQKRLEAIAGAQDLGAGFILATHDLEIRGAGELL 958

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 959  GDGQSGQI--QAVGFTLYMEMLERAVKAIQK--GEQPNLDQPLGGGPEINLRV 1007


>gi|261392435|emb|CAX49980.1| transcription-repair coupling factor (TRCF) [Neisseria meningitidis
            8013]
          Length = 1379

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/453 (33%), Positives = 236/453 (52%), Gaps = 17/453 (3%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  L  R+  +   G    +     Q       +  T+ Q +AI  +++D++Q   M R
Sbjct: 800  ELLNLYARRAAQ--SGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDR 857

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++
Sbjct: 858  LVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLS 917

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                    + ALE +A G   I+IGTH L QD+I++  L LVI+DE+HRFGV+Q+ +L +
Sbjct: 918  RFNNSKATKAALEGMADGTVDIVIGTHKLVQDNIKFKNLGLVIIDEEHRFGVRQKEQLKR 977

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                  +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E + 
Sbjct: 978  LRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVL 1036

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              L  G + +++  +++  +         R  +L     + I + HG++ + + E VM  
Sbjct: 1037 RELKRGGQVFFLHNEVDTIENMRG-----RLETLLPE--ARIGVAHGQLRERELEQVMRD 1089

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F      +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL 
Sbjct: 1090 FLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLT 1149

Query: 597  HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
               ++K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+ 
Sbjct: 1150 PEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYT 1207

Query: 654  SLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             +L+ A +D K    + PDL +  G +  I L+
Sbjct: 1208 EMLKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1238


>gi|292487974|ref|YP_003530851.1| transcription-repair-coupling factor [Erwinia amylovora CFBP1430]
 gi|292899191|ref|YP_003538560.1| transcription-repair coupling factor (TrcF) [Erwinia amylovora ATCC
            49946]
 gi|291199039|emb|CBJ46150.1| transcription-repair coupling factor (TrcF) [Erwinia amylovora ATCC
            49946]
 gi|291553398|emb|CBA20443.1| Transcription-repair-coupling factor [Erwinia amylovora CFBP1430]
          Length = 1148

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 158/496 (31%), Positives = 245/496 (49%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S        + P  K     W+   ++       +A ++  +  ++  K   G    
Sbjct: 527  HLISRYAGGAEENAPLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAK--TGFAFK 584

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             + +  Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   
Sbjct: 585  HDKQQYQLFCESFPFETTVDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AVE   Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L     G+ 
Sbjct: 645  AVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMMSRFRTAKEQAQVLADAQEGKV 704

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L Q+ I+   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL 
Sbjct: 705  DILIGTHKLLQNDIKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLN 764

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   PA R  +KT +   + +  V E +   +  G + Y++   +E   
Sbjct: 765  MAMSGMRDLSIIATPPARRLAVKTFVREYDDLA-VREAILREVLRGGQVYYLYNDVE--- 820

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              N     +R + L     + +A+ HG+M + + E VM+ F +    +L+ TT+IE GID
Sbjct: 821  --NIEKATQRLSELVPE--ARVALGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 876

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL   P  ++ +++ RL  + + 
Sbjct: 877  IPTANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAHKRLEAIASL 936

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG  QSG  + +     L+  LLE A    K    ++P
Sbjct: 937  EDLGAGFALATHDLEIRGAGELLGEGQSGQMETIGFS--LYMELLENAVDALKE--GREP 992

Query: 672  DLTSVRGQSIRILLYL 687
             L  +      I L +
Sbjct: 993  SLEDLTNSQTDIELRM 1008


>gi|229846840|ref|ZP_04466947.1| transcription-repair coupling factor [Haemophilus influenzae 7P49H1]
 gi|229810329|gb|EEP46048.1| transcription-repair coupling factor [Haemophilus influenzae 7P49H1]
          Length = 1146

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 163/480 (33%), Positives = 254/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 545  HKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAK--KGFAFKYDREEFQQFSATFPFE 602

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 603  ETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 662

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGTH L Q  +++
Sbjct: 663  LAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKF 722

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 723  NDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGISDLSIISTPP 782

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 783  ARRLSIKTFVRQNDDL-VVREAILREILRGGQVYYLHNDVASIE-----NTAEKLTTLVP 836

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A+HFG
Sbjct: 837  E--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFG 894

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++   GF++A  DL+ 
Sbjct: 895  LAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEI 954

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LL+ A K  K    ++P L  +  Q   I L +
Sbjct: 955  RGAGELLGNEQSGQIESIGFS--LYMELLDAAVKALKE--GREPSLEELTQQQADIELRV 1010


>gi|262165996|ref|ZP_06033733.1| transcription-repair coupling factor [Vibrio mimicus VM223]
 gi|262025712|gb|EEY44380.1| transcription-repair coupling factor [Vibrio mimicus VM223]
          Length = 981

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 154/473 (32%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 380 WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 437

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 438 AINAVLSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 497

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  I VE+++       +++ L+ +  G+  I++GTH L    I++  L L+I
Sbjct: 498 NFRDRFANLPIRVEVLSRFKSAKEQKQILQDVTDGKVDILVGTHKLLSSEIRFADLGLLI 557

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 558 VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 617

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +    + E +   +  G + Y++  Q+E   +     V      L     + + 
Sbjct: 618 TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETIDK-----VAADLEKLVPE--ARVT 669

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 670 VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 729

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 730 RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 789

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G +QSG  + +     L+  +LE A    K    ++P L  +  +   + + L
Sbjct: 790 GEEQSGQIQSI--GFTLYMEMLEQAVDALKS--GKEPALDDLLREQTEVEMRL 838


>gi|114047309|ref|YP_737859.1| transcription-repair coupling factor [Shewanella sp. MR-7]
 gi|113888751|gb|ABI42802.1| transcription-repair coupling factor [Shewanella sp. MR-7]
          Length = 1160

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 247/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     + +     +A ++  +  R+Q +       ++  +   +  +  PF  T  QES
Sbjct: 560  WAKAKNKAIEKIRDVAAELLDVYARRQARPGE--SCDINDEEYAQFAQGFPFEETVDQES 617

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQHYE
Sbjct: 618  AIHAVLADMQSPVAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYE 677

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  +++E+++       + + L+++  G+  I+IGTH L Q   ++  L L+I
Sbjct: 678  NFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLGLLI 737

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 738  IDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVK 797

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    V E +   +  G + Y++   +E  +        +  ++L     + + 
Sbjct: 798  TFVRESD-PATVREAILREILRGGQVYYLHNNVETIE-----KCAQDISTLLPE--ARVV 849

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 850  VAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQL 909

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   L+   P  ++ ++  RL  +   ED   GF++A +DL+ R  GE+L
Sbjct: 910  RGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELL 969

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG    +     L+  +LE A K  K    ++P L  +  Q   + L +
Sbjct: 970  GDEQSGHISKIGFS--LYMEMLESAVKALKQ--GKEPSLAQMLNQQCEMELRI 1018


>gi|24373808|ref|NP_717851.1| transcription-repair coupling factor [Shewanella oneidensis MR-1]
 gi|24348203|gb|AAN55295.1|AE015667_5 transcription-repair coupling factor [Shewanella oneidensis MR-1]
          Length = 1164

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     + +     +A ++  +  R+Q +      IN   +   +  +  PF  T  QES
Sbjct: 560  WAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEIN--DEEYAQFAQGFPFEETVDQES 617

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM     M R++ GDVG GKT VA+ A   AV  G Q V++ P  +LAQQHYE
Sbjct: 618  AIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVVVLVPTTLLAQQHYE 677

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  +++E+++       + + L+++  G+  I+IGTH L Q   ++  L L+I
Sbjct: 678  NFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLGLLI 737

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 738  IDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVK 797

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    V E +   +  G + Y++   +E  +        +  ++L     + + 
Sbjct: 798  TFVRESD-PATVREAILREILRGGQVYYLHNNVETIE-----KCAQDISTLLPE--ARVV 849

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 850  VAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQL 909

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   L+   P  ++ ++  RL  +   ED   GF++A +DL+ R  GE+L
Sbjct: 910  RGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELL 969

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG    +     L+  +LE A K  K    ++P L  +  Q   + L +
Sbjct: 970  GDEQSGHISKIGFS--LYMEMLESAVKALKQ--GKEPSLAQMLNQQCEMELRI 1018


>gi|157375968|ref|YP_001474568.1| transcription-repair coupling factor [Shewanella sediminis HAW-EB3]
 gi|157318342|gb|ABV37440.1| transcription-repair coupling factor [Shewanella sediminis HAW-EB3]
          Length = 1157

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 166/502 (33%), Positives = 255/502 (50%), Gaps = 26/502 (5%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
             L+ + S     EA        K  +  W    R+ +     +A ++  +  R+Q +   
Sbjct: 535  HLISRYSVGPDEEANLN-----KLGNETWAKAKRKAVEKIRDVAAELLDVYARRQARPGD 589

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                 V  +   +   + PF  T  QE++I  ++ DM     M R++ GDVG GKT VA+
Sbjct: 590  --ACKVIEEEYAQFANSFPFEETVDQETSINAVMTDMCSPIAMDRLVCGDVGFGKTEVAM 647

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A   AV  G Q  I+ P  +LAQQHYE  K    +  + +E+++       ++  +E +
Sbjct: 648  RAAFVAVNDGKQVAILVPTTLLAQQHYENFKDRFADWPVKIEVMSRFKTAKEQKHVMEEL 707

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            A+G+  I+IGTH L Q   ++  L L+++DE+HRFGV+Q+ K+        +L +TATPI
Sbjct: 708  ANGKVDIVIGTHKLLQSDAKFENLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPI 767

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            PRTL +   G  D+S I   PA R  +KT I   +    VIE L+  +  G + Y++   
Sbjct: 768  PRTLNMAMSGMRDLSIIATPPAKRLSVKTFIREYDDT-TVIEALQREILRGGQVYFLHNN 826

Query: 492  IEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +E  +        +R + L E    + +   HG+M + + E VM  F +    +L+ TT+
Sbjct: 827  VESIE--------KRASELSELLPEARVVTAHGQMRERELEKVMSDFYHQKFNVLVCTTI 878

Query: 551  IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL 608
            IE GIDV  A+ IIIE A+ FGLAQLHQLRGRVGR    +   L+   P  ++K+S  RL
Sbjct: 879  IETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTKDSVKRL 938

Query: 609  SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
              +   ED   GFL+A +DL+ R  GE+LG +QSG    +     L+  +LE A K  K 
Sbjct: 939  EAIGALEDLGAGFLLATQDLEIRGAGELLGDEQSGHISKI--GFTLYMEMLEDAVKSLKE 996

Query: 666  ILTQDPDLTSVRGQSIRILLYL 687
               ++P L  +      I L +
Sbjct: 997  --GKEPSLDQMLRHQCEIELRI 1016


>gi|153820314|ref|ZP_01972981.1| transcription-repair coupling factor [Vibrio cholerae NCTC 8457]
 gi|126509143|gb|EAZ71737.1| transcription-repair coupling factor [Vibrio cholerae NCTC 8457]
          Length = 691

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 91  WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 148

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 149 AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 208

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  I VE+++       +++ L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 209 NFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 268

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 269 VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 328

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +    + E +   +  G + Y++  Q+E         V      L     + I 
Sbjct: 329 TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETID-----KVAADLEKLVPE--ARIT 380

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 381 VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 440

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 441 RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 500

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G +QSG          L+  +LE A +  K    ++P L  +  +   + + L
Sbjct: 501 GEEQSGQI--QSVGFTLYMEMLEQAVEALKS--GKEPALDDLLREQTEVEMRL 549


>gi|318056542|ref|ZP_07975265.1| ATP-dependent DNA helicase RecG [Streptomyces sp. SA3_actG]
 gi|318076716|ref|ZP_07984048.1| ATP-dependent DNA helicase RecG [Streptomyces sp. SA3_actF]
          Length = 778

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/515 (29%), Positives = 255/515 (49%), Gaps = 36/515 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL     +G   +  +++ +           DLL ++P  + +R    +++E+  + 
Sbjct: 4   LDEPLKKV--LGPPTAKVMAEHL-----GLHTVGDLLHHYPRRYAERGELTRLAELPLDE 56

Query: 69  IVTITGYIS--QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            VT+   ++  +  +F   + +  ++ + DG+G + L+FF R     ++    G +    
Sbjct: 57  HVTVVARVADARVHTFNAGRGKRLEVTITDGSGRLQLVFFGRGVHKPQHDLLPGTRAMFA 116

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVN-------FPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           GK+     ++ + HP Y     +             +  +Y     L      K +   L
Sbjct: 117 GKVSVFNRKLQLAHPAYELLAEESDAREAAGTWASSLLPIYPATAKLESWKIAKAVDAVL 176

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
                  + +   L + +    + EA   IH P+   + E     R+RL +DE    Q A
Sbjct: 177 PSANEALDPLPDSLREGRGLLPLPEALVKIHRPQSKAEVEAA---RDRLKWDEAFVLQTA 233

Query: 240 LLLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L   R    +   +P               +PF+ T+ Q+   ++I  D++  + M R+L
Sbjct: 234 LARRRHADAQLPAVPRRPAPDGLLTAFDARLPFTLTEGQQKVSREIFDDLATDHPMHRLL 293

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT-----------QN 347
           QG+VGSGKT+VAL AM A V+AGGQA ++AP  +LAQQH+  I +               
Sbjct: 294 QGEVGSGKTMVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSITEMMGDLASGGTLGAAE 353

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
               V ++TG+M  A RRK L  +  G+A I+IGTHAL +D ++++ L LV+VDEQHRFG
Sbjct: 354 HATGVVLLTGSMGAAARRKVLLDLVTGEAGIVIGTHALIEDVVKFHDLGLVVVDEQHRFG 413

Query: 408 VQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           V+QR  L  + A  PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI T ++P  
Sbjct: 414 VEQRDALRSKGAQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAQ 473

Query: 467 R----IDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                +    ER++  ++ G +AY +CP+I +++E
Sbjct: 474 DKPHFLARAWERVREEVAAGHQAYVVCPRIGDEEE 508


>gi|218710049|ref|YP_002417670.1| transcription-repair coupling factor [Vibrio splendidus LGP32]
 gi|218323068|emb|CAV19245.1| transcription-repair coupling factor [Vibrio splendidus LGP32]
          Length = 1153

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 148/473 (31%), Positives = 238/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    +        +A ++  +  +++ K   G    ++           PF  T  Q  
Sbjct: 553  WQKARKRAAEKVRDVAAELLDVYAKRELK--PGYKFVLDRGQYATFKSGFPFEETDDQAM 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  ++ DM Q   M R++ GDVG GKT VA+ A     +   Q  ++ P  +LAQQH+E
Sbjct: 611  AINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVCTDNSKQVAVLVPTTLLAQQHFE 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       ++  ++ +A G+  I++GTH L    +Q+  L L++
Sbjct: 671  NFRDRFANLPIRVEVLSRFKSAKEQKSIMQDVADGKVDILVGTHKLLSSDLQFKDLGLLV 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 731  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    V E +   +  G + Y++  Q++  +        E    L     + + 
Sbjct: 791  TFVRESDD-AIVREAVLREIMRGGQVYFLHNQVDTIE-----KTAESLQKLIPE--ARVT 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E +M+ F +    LL+ TT+IE GIDV  A+ I+++ A++ GLAQLHQL
Sbjct: 843  VAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTILMDRADNLGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPPPKAMTKDAVKRLDAIASLEDLGAGFTLATHDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   I + L
Sbjct: 963  GDEQSGQI--QSVGFTLYMEMLEQAVEALKE--GREPSLDDLLREQTEIEMRL 1011


>gi|312172099|emb|CBX80356.1| Transcription-repair-coupling factor [Erwinia amylovora ATCC
            BAA-2158]
          Length = 1148

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 158/496 (31%), Positives = 245/496 (49%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S        + P  K     W+   ++       +A ++  +  ++  K   G    
Sbjct: 527  HLISRYAGGAEENAPLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAK--TGFAFK 584

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             + +  Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   
Sbjct: 585  HDKQQYQLFCESFPFETTVDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AVE   Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L     G+ 
Sbjct: 645  AVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMMSRFRTAKEQAQVLADAQEGKV 704

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L Q+ I+   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL 
Sbjct: 705  DILIGTHKLLQNDIKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLN 764

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   PA R  +KT +   + +  V E +   +  G + Y++   +E   
Sbjct: 765  MAMSGMRDLSIIATPPARRLAVKTFVREYDDLA-VREAILREVLRGGQVYYLYNDVE--- 820

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              N     +R + L     + +A+ HG+M + + E VM+ F +    +L+ TT+IE GID
Sbjct: 821  --NIEKATQRLSELVPE--ARVALGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 876

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL   P  ++ +++ RL  + + 
Sbjct: 877  IPTANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAHKRLEAIASL 936

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG  QSG  + +     L+  LLE A    K    ++P
Sbjct: 937  EDLGAGFALATHDLEIRGAGELLGEGQSGQMETIGFS--LYMELLENAVDALKE--GREP 992

Query: 672  DLTSVRGQSIRILLYL 687
             L  +      I L +
Sbjct: 993  SLEDLTNSQTDIELRM 1008


>gi|258625932|ref|ZP_05720803.1| transcription-repair coupling factor [Vibrio mimicus VM603]
 gi|258581797|gb|EEW06675.1| transcription-repair coupling factor [Vibrio mimicus VM603]
          Length = 872

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 154/473 (32%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 271 WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 328

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 329 AINAVLSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 388

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  I VE+++       +++ L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 389 NFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 448

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 449 VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 508

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +    + E +   +  G + Y++  Q+E   +     V      L     + + 
Sbjct: 509 TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETIDK-----VAADLEKLVPE--ARVT 560

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 561 VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 620

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL  PP  ++K++   L  + + ED   GF +A  DL+ R  GE+L
Sbjct: 621 RGRVGRSHHQAYAYLLTPPPKAITKDAVKHLEAIASLEDLGAGFTLATHDLEIRGAGELL 680

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G +QSG  + +     L+  +LE A    K    ++P L  +  +   + + L
Sbjct: 681 GEEQSGQIQSI--GFTLYMEMLEQAVDALKS--GKEPALDDLLREQTEVEMRL 729


>gi|332288167|ref|YP_004419019.1| transcription-repair coupling factor [Gallibacterium anatis UMN179]
 gi|330431063|gb|AEC16122.1| transcription-repair coupling factor [Gallibacterium anatis UMN179]
          Length = 1147

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 249/480 (51%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    ++       +A ++  +  +++ +   G     + +  Q+     PF 
Sbjct: 540  HKLGSDAWARSRQKAAEKVRDVAAELLDVYAKRESR--PGFAFKYDREEFQQFADTFPFE 597

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q+ AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 598  ETYDQQMAINAVIGDMCQAKPMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 657

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHY+  +    N  + VE+++       ++  L  +  G+  I+IGTH L Q  + +
Sbjct: 658  LAQQHYDNFRDRFANLPVNVEVLSRFKTSKEQKNVLTLVKEGKIDILIGTHKLLQGDVDF 717

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            + L L+I+DE+HRFGV+Q+ K+ Q  T   +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 718  HDLGLLIIDEEHRFGVRQKEKIKQLRTNIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 777

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   ++   V E +   +  G + Y++   +        ++  E+   L  
Sbjct: 778  ARRLVIKTFVREQDKR-VVREAILREILRGGQVYYLHNDVATI-----QNCAEKLVELVP 831

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I I HG+M + + E VM  F +    +L+ TT+IE GID+  A+ IIIE A+HFG
Sbjct: 832  E--ARIGIGHGQMRERELERVMTDFYHQRFNVLVCTTIIETGIDIPSANTIIIERADHFG 889

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  P   ++K++  RL  L + ++   GF++A  DL+ 
Sbjct: 890  LAQLHQLRGRVGRSHHQAYAYLLAPPAKLMTKDAQKRLEALSSLDNLGAGFVLATHDLEI 949

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  +LE A +  K    ++P L  +    + I L +
Sbjct: 950  RGAGELLGDEQSGQIETIGFS--LYMEMLENAMQALKQ--GKEPSLDELTQAQVEIDLRI 1005


>gi|88860092|ref|ZP_01134731.1| transcription-repair ATP-dependent coupling factor [Pseudoalteromonas
            tunicata D2]
 gi|88818086|gb|EAR27902.1| transcription-repair ATP-dependent coupling factor [Pseudoalteromonas
            tunicata D2]
          Length = 1157

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 162/473 (34%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ K         + K  ++ +   PF  T+ Q++
Sbjct: 559  WEKAKRKAAEKVRDVAAELLDIYAKRKIKLGN--AFRHDKKAYRQFVDTFPFEETEDQKN 616

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQH+E
Sbjct: 617  AISAVLTDMQSPQAMDRLVCGDVGFGKTEVAMRAAFVAVNEGKQVAILVPTTLLAQQHFE 676

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    N  + VE+++       +   LE++A+GQ  I+IGTH L Q SI++  L L+I
Sbjct: 677  NFKDRFANIAVEVEVLSRFKTTKEQNVVLEKLANGQVDIVIGTHKLIQPSIKFKDLGLLI 736

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 737  VDEEHRFGVRQKEKIKSLRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVK 796

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +      D   E +   +  G + Y++   +E  +      V      L     +SI 
Sbjct: 797  TFVRKGED-DLKREAILREIKRGGQVYYLHNNVETIE-----KVAADLAVLVPE--ASIT 848

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              HG+M + + E +M  F +    +L+ TT+IE GIDV  A+ III+ A+  GLAQLHQL
Sbjct: 849  TAHGQMRESELEHLMAEFYHKKYNVLVCTTIIETGIDVPTANTIIIDRADKLGLAQLHQL 908

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  +SK++  RL  +++ ED   GF +A  DL+ R  GE+L
Sbjct: 909  RGRVGRSHHQAYAYLLIPDPKGISKDATKRLEAIESLEDLGAGFALATHDLEIRGAGELL 968

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     L+  +LE A +  K    ++P L ++  Q   + L +
Sbjct: 969  GDDQSGQIQSI--GFTLYMEMLEQAVEALKQ--GKEPTLENLLQQQTEVDLKI 1017


>gi|289579379|ref|YP_003478006.1| transcription-repair coupling factor [Thermoanaerobacter italicus
            Ab9]
 gi|289529092|gb|ADD03444.1| transcription-repair coupling factor [Thermoanaerobacter italicus
            Ab9]
          Length = 1163

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 162/546 (29%), Positives = 264/546 (48%), Gaps = 38/546 (6%)

Query: 130  KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP-TGLSVDLFKKIIVEALSRLPVLPEW 188
             ++KN   +    Y+ H +        E +  +   G+  D   KII      L V  E 
Sbjct: 493  DRIKNFTELEVGSYVVHVNY--GIGKYEGIEKIKVDGIIRDYL-KIIYAGGDTLFVPVEQ 549

Query: 189  IEKDLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRK 245
            +  DL+QK   P+         NP K       EW    R+     E LA  +  L  ++
Sbjct: 550  L--DLVQKYVGPT--------DNPPKLNKLGGSEWLKAKRKAKKAVEDLAKDLIQLYAKR 599

Query: 246  QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            Q     G   + +    ++     P+  T+ Q   IK+I +DM +   M R+L GDVG G
Sbjct: 600  QIA--KGHAFSPDTPWQREFEEQFPYEETEDQLRCIKEIKEDMEKDKPMDRLLCGDVGYG 657

Query: 306  KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
            KT VAL A   AV  G Q   + P  ILA QHY    +  +   + +E+++       + 
Sbjct: 658  KTEVALRAAFKAVADGKQVAFLCPTTILAYQHYTNFMERFKEFPVKIEMLSRFRTPKEQA 717

Query: 366  KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
            + ++ +A G   II+GTH L Q+ +++  L L+I+DE+ RFGV  + K+ +      VL 
Sbjct: 718  QIIKGLAEGTIDIIVGTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLT 777

Query: 426  MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
            ++ATPIPRTL ++ +G  D+S +   P  R P++T ++  N  + + + +   +  G + 
Sbjct: 778  LSATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNE-ELIKDAILREIGRGGQV 836

Query: 486  YWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCK 543
            Y++  ++         + +E+  SL +       +A+ HG+M +   E VM  F NG   
Sbjct: 837  YFVYNRV---------NGIEKMASLVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYD 887

Query: 544  LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LS 601
            +L++TT+IE G+D+ + + II+ +A+  GL+QL+QLRGRVGR   ++     Y     LS
Sbjct: 888  VLVSTTIIETGLDIPNVNTIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLS 947

Query: 602  KNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            + +  RL  +K       GF IA  DL+ R  G +LG +Q G    +     L   LLE 
Sbjct: 948  EVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHGHIGAIGYDLYL--KLLEE 1005

Query: 659  ARKDAK 664
            A ++ K
Sbjct: 1006 AIRNLK 1011


>gi|126654454|ref|ZP_01726189.1| ATP-dependent DNA helicase RecG [Bacillus sp. B14905]
 gi|126589088|gb|EAZ83297.1| ATP-dependent DNA helicase RecG [Bacillus sp. B14905]
          Length = 405

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 182/406 (44%), Positives = 256/406 (63%), Gaps = 5/406 (1%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA I + AAV AG Q  +MAP  ILA+QH E + ++ Q   + V 
Sbjct: 1   MNRLLQGDVGSGKTVVAAIGLYAAVSAGYQGALMAPTEILAEQHLENLLEWFQPFGVRVA 60

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +++G+     RR  L  +A+G+  I+IGTHAL Q  + +  L  VI DEQHRFGV+QR  
Sbjct: 61  LLSGSTKTKERRVILADLANGELDIVIGTHALIQPDVIFKNLGFVITDEQHRFGVEQRRI 120

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L  K   P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T  +   +   VI 
Sbjct: 121 LRDKGENPDVLFMTATPIPRTLAITAFGEMDVSMIDEMPAGRKQIETHWMKKEQFGSVIS 180

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKE 531
           +L+  L+ G++AY ICP IEE  + + ++ VE +  L  +FT    + ++HGR+S  +K+
Sbjct: 181 KLEGELAAGRQAYAICPLIEESDKLDVQNAVEIYEQLATYFTGRYQVGLMHGRLSADEKD 240

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           +VM +F +G+ ++L++TTV+EVG++V +A+ +I+ +AE FGLAQLHQLRGRVGRGE  S 
Sbjct: 241 AVMRAFSDGSIQVLVSTTVVEVGVNVPNATFMIVYDAERFGLAQLHQLRGRVGRGEHQSY 300

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           CILL  P  S     R+  +  T DGF +AE+DL+ R  G+  G KQSG+P F +A    
Sbjct: 301 CILLADPK-SDEGKERMQSMTETNDGFRLAEKDLELRGPGDFFGRKQSGLPDFKVADLVH 359

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ--YNEAFQ 695
              +LE ARKDA  +L  D        + +R +L        E F 
Sbjct: 360 DYRILETARKDATTMLETDDFWHGDDYRYLREMLENSGVLQGERFD 405


>gi|325134475|gb|EGC57120.1| transcription-repair coupling factor [Neisseria meningitidis M13399]
          Length = 1305

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 236/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 728  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 787

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 788  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 847

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 848  SKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 907

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 908  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 966

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 967  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 1019

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 1020 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1079

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1080 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 1137

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1138 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1164


>gi|238920223|ref|YP_002933738.1| transcription-repair coupling factor [Edwardsiella ictaluri 93-146]
 gi|238869792|gb|ACR69503.1| transcription-repair coupling factor, putative [Edwardsiella ictaluri
            93-146]
          Length = 1153

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 241/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +   +  K   G     + +  Q   +  PF  T  Q  
Sbjct: 556  WSRARQKAAEKVRDVAAELLDIYAMRAAK--AGFAFRHDREAYQLFCQGFPFETTADQAM 613

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQHY+
Sbjct: 614  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVHSGKQVAVLVPTTLLAQQHYD 673

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + L     G+  I+IGTH L Q  +Q+  L L+I
Sbjct: 674  NFRDRFANWPVRIEMISRFRSAKEQTQVLADTVDGKVDILIGTHKLLQGDVQWRDLGLLI 733

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 734  VDEEHRFGVRQKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRMAVK 793

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +      G + Y++   ++       +   +R  +L     + IA
Sbjct: 794  TFVREYDSL-VVREAILRETLRGGQVYYLYNDVDTI-----QKAADRLATLVPE--ARIA 845

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 846  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 905

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 906  RGRVGRSYHQAYAYLLTPPPKAMTVDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 965

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 966  GDDQSGQM--ASVGFSLYMELLESAVTALKE--GREPSLEDLTSQQTEVELRM 1014


>gi|260768914|ref|ZP_05877848.1| transcription-repair coupling factor [Vibrio furnissii CIP 102972]
 gi|260616944|gb|EEX42129.1| transcription-repair coupling factor [Vibrio furnissii CIP 102972]
          Length = 1153

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/473 (32%), Positives = 240/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ K   G    ++           PF  T  Q  
Sbjct: 553  WVKARRKAAEKVRDVAAELLDVYAKRELK--PGYKFQLDRDQYATFKSGFPFEETDDQAM 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  ++ DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 611  AINAVMSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       ++  L+ +A G+  I++GTH L    I++  L L++
Sbjct: 671  NFRDRFANLPIRVEVLSRFKSAKEQKAILQDVADGKVDIVVGTHKLLSSDIKFADLGLLV 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 731  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRMAIK 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +  G + Y++  Q+E         V      L     + I 
Sbjct: 791  TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVESID-----KVAADLEKLIPE--ARIT 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 843  VAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPHPKAMTKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A +  K    ++P L  +  +   + L +
Sbjct: 963  GDEQSGQIQSI--GFTLYMEMLEQAVEALKS--GKEPSLDDLLREQTEVELRI 1011


>gi|167032697|ref|YP_001667928.1| transcription-repair coupling factor [Pseudomonas putida GB-1]
 gi|166859185|gb|ABY97592.1| transcription-repair coupling factor [Pseudomonas putida GB-1]
          Length = 1141

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  +   G                 PF  T  Q++
Sbjct: 544  WQKAKRKAAEQVRDVAAELLDIYARRAAR--KGYAFADPSADYATFSAGFPFEETPDQQA 601

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQHY 
Sbjct: 602  AIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHYN 661

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A   +A G+  I+IGTH L QD +++  L L I
Sbjct: 662  SFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGLAI 721

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 722  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVR 781

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   V E L   L  G + Y++   ++  +             L     + I 
Sbjct: 782  TFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 833

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+IE A+ FGLAQLHQL
Sbjct: 834  IGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQL 893

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      +S ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 894  RGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 953

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +      P+L    G    I L L
Sbjct: 954  GEGQSGQI--QAVGFTLYMEMLERAVKAIRK--GTQPNLEQPLGGGPEINLRL 1002


>gi|240013954|ref|ZP_04720867.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            DGI18]
 gi|240121523|ref|ZP_04734485.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            PID24-1]
          Length = 1234

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/449 (33%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 655  LNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 714

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 715  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 774

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +    
Sbjct: 775  SKATKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLRAN 834

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 835  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 893

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 894  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 946

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 947  RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1006

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1007 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLK 1064

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1065 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1091


>gi|268601549|ref|ZP_06135716.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID18]
 gi|268585680|gb|EEZ50356.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID18]
          Length = 1241

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/449 (33%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 662  LNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 721

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 722  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 781

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +    
Sbjct: 782  SKATKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLRAN 841

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 842  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 900

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 901  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 953

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 954  RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1013

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1014 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLK 1071

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1072 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1098


>gi|268599202|ref|ZP_06133369.1| transcription-repair coupling factor [Neisseria gonorrhoeae MS11]
 gi|268603888|ref|ZP_06138055.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID1]
 gi|268682351|ref|ZP_06149213.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID332]
 gi|268583333|gb|EEZ48009.1| transcription-repair coupling factor [Neisseria gonorrhoeae MS11]
 gi|268588019|gb|EEZ52695.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID1]
 gi|268622635|gb|EEZ55035.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID332]
          Length = 1241

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/449 (33%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 662  LNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 721

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 722  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 781

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +    
Sbjct: 782  SKATKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLRAN 841

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 842  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 900

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 901  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 953

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 954  RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1013

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1014 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLK 1071

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1072 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1098


>gi|295676504|ref|YP_003605028.1| transcription-repair coupling factor [Burkholderia sp. CCGE1002]
 gi|295436347|gb|ADG15517.1| transcription-repair coupling factor [Burkholderia sp. CCGE1002]
          Length = 1159

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 155/479 (32%), Positives = 235/479 (49%), Gaps = 19/479 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +W    R+        A ++  L  R+  ++     +    K   K   +  F 
Sbjct: 548  HSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAAREGHAFALEP--KDYVKFAESFGFE 605

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +
Sbjct: 606  ETPDQAAAIAAVIGDMTGGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTL 665

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QH +       +  + +  ++          A+++I  G   I+IGTH L    +Q+
Sbjct: 666  LAEQHTQTFSDRFSDWPVRIAELSRFKSTKEVNAAIQQINEGSVDIVIGTHKLLSSDVQF 725

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P
Sbjct: 726  KRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAP 785

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  IKT +        + E +   L  G + Y++  ++E  +     +  +   +L  
Sbjct: 786  QKRLAIKTFV-RREEDSVIREAMLRELKRGGQVYFLHNEVETIE-----NRRQMLEALVP 839

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IA+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  ++ FG
Sbjct: 840  E--ARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRSDKFG 897

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ 
Sbjct: 898  LAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEI 957

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 958  RGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1012


>gi|238754400|ref|ZP_04615756.1| Transcription-repair-coupling factor [Yersinia ruckeri ATCC 29473]
 gi|238707433|gb|EEP99794.1| Transcription-repair-coupling factor [Yersinia ruckeri ATCC 29473]
          Length = 1148

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 241/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G    ++ +      ++ PF  T  QE 
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAVK--SGFKFKLDREQYPLFCQSFPFETTPDQEQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVSNNKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       + +E+++       ++  LE+ A G+  I+IGTH L Q  + +  L L+I
Sbjct: 668  NFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKVDILIGTHKLLQSDLHWKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N     +R   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREVLRGGQVYYLYNDVE-----NIEKATQRLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     L+  LLE A    K    ++P L  +      I L +
Sbjct: 960  GEDQSGQMTTIGFS--LYMELLESAVDALKE--GREPSLEDLTNNQTEIELRM 1008


>gi|15602906|ref|NP_245978.1| hypothetical protein PM1041 [Pasteurella multocida subsp. multocida
            str. Pm70]
 gi|12721375|gb|AAK03125.1| Mfd [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 1145

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 161/472 (34%), Positives = 250/472 (52%), Gaps = 18/472 (3%)

Query: 222  SPARERLAYDELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
            +  R R    E +    A LL +  Q + + G   + + +  Q+     PF  T  QE A
Sbjct: 550  AWVRARQKAAEKIRDVAAELLDVYAQREAQKGFAFHYDREAFQQFAATFPFEETVDQEMA 609

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            I  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH+E 
Sbjct: 610  INAVIADMCQAKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHFEN 669

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
             K    N  I VE+++       ++  L+ +A G+  I+IGTH L Q  +Q+  L L+++
Sbjct: 670  FKDRFANLPINVEVLSRFKTAKEQKVVLQNLAEGKVDILIGTHKLIQSDVQFKDLGLLVI 729

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+HRFGV+Q+ ++ Q      +L +TATPIPRTL +   G  D+S I+  PA R  IKT
Sbjct: 730  DEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMAMHGIRDLSIISTPPARRLTIKT 789

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             +   +    + E +   +  G + Y++   +   +     +  E+  +L     + + I
Sbjct: 790  FVKQSDE-SVIREAILREILRGGQVYYLHNDVASIE-----NCAEKLRTLVPE--ARVTI 841

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A++FGLAQLHQLR
Sbjct: 842  GHGQMRERELERVMSDFYHQRFNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLR 901

Query: 581  GRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILG 635
            GRVGR    +   LL  P   ++K++  RL  L++ ++   GF++A  DL+ R  GE+LG
Sbjct: 902  GRVGRSHHQAYAYLLTPPIKAMTKDAQKRLEALESLDNLGAGFILATHDLEIRGAGELLG 961

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
             +QSG  + +     +   LLE A    K    ++P L  +  Q + I L L
Sbjct: 962  SEQSGQIESIGFSLYMD--LLESAVNALKA--GREPSLEELTQQQVEIDLRL 1009


>gi|229845348|ref|ZP_04465480.1| transcription-repair coupling factor [Haemophilus influenzae 6P18H1]
 gi|229811801|gb|EEP47498.1| transcription-repair coupling factor [Haemophilus influenzae 6P18H1]
          Length = 1146

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 163/480 (33%), Positives = 254/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 545  HKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAK--KGFAFKYDREEFQQFSATFPFE 602

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 603  ETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 662

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGTH L Q  +++
Sbjct: 663  LAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILESLAEGKVDILIGTHKLIQSDVKF 722

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 723  NDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 782

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 783  ARRLSIKTFVRQNDDL-VVREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVP 836

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A+HFG
Sbjct: 837  E--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFG 894

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++   GF++A  DL+ 
Sbjct: 895  LAQLHQLRGRVGRSHHQAYTYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEI 954

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LL+ A K  K    ++P L  +  Q   I L +
Sbjct: 955  RGAGELLGNEQSGQIESIGFS--LYMELLDAAVKALKE--GREPSLEELTQQQADIELRV 1010


>gi|85059053|ref|YP_454755.1| transcription-repair coupling factor [Sodalis glossinidius str.
            'morsitans']
 gi|84779573|dbj|BAE74350.1| transcription-repair coupling factor [Sodalis glossinidius str.
            'morsitans']
          Length = 1150

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 248/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT   ++       +A ++  +  ++  K   G       +  Q      PF PT  Q  
Sbjct: 551  WTRARQKAAERVRDVAAELLDIYAQRAAK--SGFAFRHNRENYQLFCEGFPFEPTVDQSQ 608

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A+E   Q  ++ P  +LAQQH++
Sbjct: 609  AINAVLSDMCQPLSMDRLICGDVGFGKTEVAMRAAFLAIENHKQVAVLVPTTLLAQQHFD 668

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       + + LE+ A G+  I+IGTH L Q  ++++ L L+I
Sbjct: 669  NFRDRFANWPVRIEMISRFRSARDQAQVLEQTAEGKVDILIGTHKLLQSDVKWHDLGLLI 728

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 729  VDEEHRFGVRHKERIKAMRAGVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLTVK 788

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E  +++          +L     + IA
Sbjct: 789  TFVRQYDAL-VVREAILREVLRGGQVYYLYNDVENIEKAARC-----LETLVPE--ARIA 840

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG++ + + E VM+ F +    +L+ TT+IE GID+ +A+ IIIE A+HFGLAQLHQL
Sbjct: 841  IGHGQLRERELERVMNDFHHQRFNVLVCTTIIETGIDIANANTIIIERADHFGLAQLHQL 900

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  LS++++ RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 901  RGRVGRSHHQAYAYLLTPPPKALSQDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELL 960

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     +   LLE A    K    ++P L  +  Q   + L +
Sbjct: 961  GEDQSGQMETIGFSLYMD--LLESAVDALKA--GREPSLEDLTRQLTEVELRM 1009


>gi|325140492|gb|EGC63013.1| transcription-repair coupling factor [Neisseria meningitidis CU385]
          Length = 1305

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 236/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 728  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 787

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 788  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 847

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 848  SKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 907

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 908  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 966

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 967  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 1019

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 1020 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1079

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1080 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 1137

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1138 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1164


>gi|325144576|gb|EGC66875.1| transcription-repair coupling factor [Neisseria meningitidis
            M01-240013]
 gi|325205943|gb|ADZ01396.1| transcription-repair coupling factor [Neisseria meningitidis
            M04-240196]
          Length = 1296

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 236/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 719  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQTKPMDRLVCG 778

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 779  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 838

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 839  SKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 898

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 899  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 957

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 958  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 1010

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 1011 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1070

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1071 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 1128

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1129 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1155


>gi|145634410|ref|ZP_01790120.1| transcription-repair coupling factor [Haemophilus influenzae PittAA]
 gi|145268390|gb|EDK08384.1| transcription-repair coupling factor [Haemophilus influenzae PittAA]
          Length = 1146

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 163/480 (33%), Positives = 254/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 545  HKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAK--KGFAFKYDREEFQQFSATFPFE 602

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 603  ETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 662

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGTH L Q  +++
Sbjct: 663  LAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILESLAEGKVDILIGTHKLIQSDVKF 722

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 723  NDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 782

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 783  ARRLSIKTFVRQNDDL-VVREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVP 836

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A+HFG
Sbjct: 837  E--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFG 894

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++   GF++A  DL+ 
Sbjct: 895  LAQLHQLRGRVGRSHHQAYTYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEI 954

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LL+ A K  K    ++P L  +  Q   I L +
Sbjct: 955  RGAGELLGNEQSGQIESIGFS--LYMELLDAAVKALKE--GREPSLEELTQQQADIELRV 1010


>gi|261210529|ref|ZP_05924822.1| transcription-repair coupling factor [Vibrio sp. RC341]
 gi|260840314|gb|EEX66885.1| transcription-repair coupling factor [Vibrio sp. RC341]
          Length = 1155

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 555  WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 613  AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       ++  L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 673  NFRDRFANLPIRVEVLSRFKSAKEQKLILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 733  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +  G + Y++  Q+E         V      L     + I 
Sbjct: 793  TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETID-----KVAADLEKLVPE--ARIT 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A +  K    ++P L  +  +   + + L
Sbjct: 965  GEEQSGQIQSI--GFTLYMEMLEQAVEALKS--GKEPALDDLLREQTEVEMRL 1013


>gi|152978238|ref|YP_001343867.1| transcription-repair coupling factor [Actinobacillus succinogenes
            130Z]
 gi|150839961|gb|ABR73932.1| transcription-repair coupling factor [Actinobacillus succinogenes
            130Z]
          Length = 1148

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 253/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W+   R+       +A ++  +  +++ +   G     E +  Q      PF 
Sbjct: 547  HKLGSDAWSKARRKAAEKIRDVAAELLDVYAQREAQ--KGFAFQYEREEFQAFSATFPFE 604

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q  AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 605  ETFDQALAINAVISDMCQPKAMDRLICGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 664

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  +    N  + VE+++       +++ L  +A G+  I+IGTH L Q  +++
Sbjct: 665  LAQQHYENFRDRFANLPVNVEVLSRFKTAKEQKRVLADLADGKVDILIGTHKLIQSDVKF 724

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            + L L+I+DE+HRFGV+Q+ ++ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 725  HDLGLLIIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 784

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 785  ARRLTIKTFVRQQDDL-TVREAILREILRGGQVYYLHNDVASIE-----NCAEKLTALVP 838

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A++FG
Sbjct: 839  E--ARVTVGHGQMRERELERVMTDFYHQRFNVLVCSTIIETGIDVPTANTIIIERADNFG 896

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L++ ++   GF++A  DL+ 
Sbjct: 897  LAQLHQLRGRVGRSHHQAYAYLLTPPPKLMTKDALKRLEALESLDNLGAGFVLATHDLEI 956

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LLE A    K    ++P L  +  Q + I L +
Sbjct: 957  RGAGELLGSEQSGQIESIGFS--LYMELLEAAVTAMKE--GREPSLDELTQQQVEIDLRV 1012


>gi|170692379|ref|ZP_02883542.1| transcription-repair coupling factor [Burkholderia graminis C4D1M]
 gi|170142809|gb|EDT10974.1| transcription-repair coupling factor [Burkholderia graminis C4D1M]
          Length = 1160

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 155/479 (32%), Positives = 233/479 (48%), Gaps = 19/479 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +W    R+        A ++  L  R+  +      +    K   K   +  F 
Sbjct: 548  HSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAARSGHAFALEP--KDYVKFAESFGFE 605

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +
Sbjct: 606  ETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTL 665

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QH +       +  + +  ++          A+++I  G   I+IGTH L    +Q+
Sbjct: 666  LAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIQQINEGSVDIVIGTHKLLSSDVQF 725

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P
Sbjct: 726  KRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAP 785

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  IKT +        + E +   L  G + Y++  ++E  +     +  +   +L  
Sbjct: 786  QKRLAIKTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRRQMLEALVP 839

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IA+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  ++ FG
Sbjct: 840  E--ARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRSDKFG 897

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ 
Sbjct: 898  LAQLHQLRGRVGRSHHQAYAYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEI 957

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE+LG KQSG    +  Q  L+  +L  A K  K    ++PDLT+    +  I L+
Sbjct: 958  RGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKD--GKEPDLTAPLAATTEINLH 1012


>gi|59801051|ref|YP_207763.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            FA 1090]
 gi|59717946|gb|AAW89351.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            FA 1090]
          Length = 1234

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/449 (33%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 655  LNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 714

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 715  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 774

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +    
Sbjct: 775  SKATKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLRAN 834

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 835  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 893

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 894  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 946

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 947  RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1006

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1007 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLK 1064

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1065 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1091


>gi|238789093|ref|ZP_04632882.1| Transcription-repair-coupling factor [Yersinia frederiksenii ATCC
            33641]
 gi|238722857|gb|EEQ14508.1| Transcription-repair-coupling factor [Yersinia frederiksenii ATCC
            33641]
          Length = 1099

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G    ++ +  Q   ++ PF  T  QE 
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAVK--SGFKFKLDREQYQLFCQSFPFETTPDQEQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLNDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       + +E+++       ++  LE+ A G+  IIIGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFATWPVRIEMMSRFRSAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWQDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N     +R   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIEKATQRLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     L+  LLE A    K    ++P L  +      I + +
Sbjct: 960  GEDQSGQMTTIGFS--LYMELLESAVDALKE--GREPSLEDLTSNQTEIEMRM 1008


>gi|153213092|ref|ZP_01948630.1| transcription-repair coupling factor [Vibrio cholerae 1587]
 gi|124116139|gb|EAY34959.1| transcription-repair coupling factor [Vibrio cholerae 1587]
          Length = 1155

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 555  WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 613  AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       +++ L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 673  NFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 733  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +  G + Y++  Q+E         V      L     + I 
Sbjct: 793  TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETID-----KVAADLEKLVPE--ARIT 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLTPTPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   + + L
Sbjct: 965  GEEQSGQI--QSVGFTLYMEMLEQAVEALKS--GKEPALDDLLREQTEVEMRL 1013


>gi|240080515|ref|ZP_04725058.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            FA19]
 gi|240113117|ref|ZP_04727607.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            MS11]
 gi|240118171|ref|ZP_04732233.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            PID1]
 gi|240123719|ref|ZP_04736675.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            PID332]
 gi|268596647|ref|ZP_06130814.1| transcription-repair coupling factor [Neisseria gonorrhoeae FA19]
 gi|268550435|gb|EEZ45454.1| transcription-repair coupling factor [Neisseria gonorrhoeae FA19]
          Length = 1234

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/449 (33%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 655  LNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 714

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 715  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 774

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +    
Sbjct: 775  SKATKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLRAN 834

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 835  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 893

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 894  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 946

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 947  RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1006

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1007 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLK 1064

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1065 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1091


>gi|194098853|ref|YP_002001917.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            NCCP11945]
 gi|240115873|ref|ZP_04729935.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            PID18]
 gi|193934143|gb|ACF29967.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            NCCP11945]
          Length = 1234

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/449 (33%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 655  LNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 714

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 715  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 774

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +    
Sbjct: 775  SKATKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLRAN 834

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 835  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 893

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 894  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 946

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 947  RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1006

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1007 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLK 1064

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1065 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1091


>gi|300214981|gb|ADJ79397.1| Transcription-repair coupling factor [Lactobacillus salivarius CECT
           5713]
          Length = 908

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 146/463 (31%), Positives = 249/463 (53%), Gaps = 20/463 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R      E +A ++  L  +++ +   G     +    ++     P++ T  Q 
Sbjct: 302 EWAKTKRRVANKIEDIADELVDLYAKREAE--KGYAFTPDDSYQKEFEDAFPYTETPDQL 359

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + K+I QDM +   M R+L GDVG GKT VAL A   AV+ G Q   +AP  +LAQQHY
Sbjct: 360 RSAKEIKQDMEKTKPMDRLLIGDVGYGKTEVALRAAFKAVQDGKQVAFLAPTTVLAQQHY 419

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +++  +N  + + I++        ++ +E +  G+  I++GTH L    +++  L L+
Sbjct: 420 ETMEQRFENFPVEIGILSRFNTAKEIKETIENLETGKLDIVVGTHRLLSKDVKFADLGLL 479

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L +  T+  VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 480 IIDEEQRFGVKHKERLKELKTSVDVLTLTATPIPRTLNMSMLGVRDLSVIETAPMNRYPI 539

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T +I  N    +++ +K  +  G + +++  ++++ ++           SL     + +
Sbjct: 540 QTYVIEKN-YGVIVDGIKREIERGGQVFYLHNRVDDIEKVAS-----ELESLVPE--AKV 591

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A IHGRM++   E+++  F +G   +L+ TT+IE G+D+ + + + ++NA+  GL+QL+Q
Sbjct: 592 AYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRMGLSQLYQ 651

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR   I+    +Y P   L++ +  RL  +K+      GF IA  DL  R  G +
Sbjct: 652 LRGRVGRSNRIAYAYFMYQPNKVLTEVAEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 711

Query: 634 LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI-LTQDPDL 673
           LG +Q G    +     L+  +L   +A+K  K I +  D +L
Sbjct: 712 LGKQQHGFIDSVGYD--LYTQMLNDAVAKKRGKEIKVKTDAEL 752


>gi|242239055|ref|YP_002987236.1| transcription-repair coupling factor [Dickeya dadantii Ech703]
 gi|242131112|gb|ACS85414.1| transcription-repair coupling factor [Dickeya dadantii Ech703]
          Length = 1147

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 161/473 (34%), Positives = 240/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++       +A ++  +  ++  K   G       +  Q   +  PF  T  QE 
Sbjct: 548  WARARQKAAEKVRDVAAELLDVYAQRAAK--TGFAFRHNREQYQLFCQRFPFETTPDQEQ 605

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 606  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 665

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++    Q  + + LE    G+  I+IGTH L Q  + +  L L+I
Sbjct: 666  NFRDRFANWPVRIEMLSRFRSQREQTQVLEETQEGKVDILIGTHKLLQSDVHWRDLGLLI 725

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +      D+S I   PA R  +K
Sbjct: 726  VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMHNIRDLSIIATPPARRLAVK 785

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N     +R   L     + IA
Sbjct: 786  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIGKAAQRLGELVPE--ARIA 837

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 838  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 897

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  +S +++ RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 898  RGRVGRSHHQAYAYLLTPNPKTMSADAHKRLEAIASLEDLGAGFALATHDLEIRGAGELL 957

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  +       L+  LLE A +  K    ++P L  +      + L L
Sbjct: 958  GEDQSGQME--SVGFSLYMELLESAVESLKA--GREPSLEDLISSQTEVELRL 1006


>gi|104782724|ref|YP_609222.1| transcription-repair coupling protein [Pseudomonas entomophila L48]
 gi|95111711|emb|CAK16435.1| transcription-repair coupling protein [Pseudomonas entomophila L48]
          Length = 1149

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 235/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  +   G                 PF  T  Q++
Sbjct: 552  WQKAKRKAAEQVRDVAAELLDIYARRAAR--KGYAFADPAADYATFSAGFPFEETPDQQA 609

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQHY 
Sbjct: 610  AIEAVRADMLAGQPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHYN 669

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A   +A G+  I+IGTH L QD +++  L L I
Sbjct: 670  SFRDRFADWPVTVEVMSRFKSAKEVATAAAELAEGKIDILIGTHKLLQDDVRFKDLGLAI 729

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 730  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 789

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   V E L   L  G + Y++   ++  +             L     + I 
Sbjct: 790  TFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIE-----KCAAELAELVPE--ARIG 841

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ I+IE A+ FGLAQLHQL
Sbjct: 842  IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVIERADKFGLAQLHQL 901

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   +S ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 902  RGRVGRSHHQAYAYLLTPPRQQISADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 961

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +      P+L    G    I L L
Sbjct: 962  GEGQSGQI--QAVGFTLYMEMLERAVKAIRK--GNQPNLEQPLGGGPEINLRL 1010


>gi|218768305|ref|YP_002342817.1| transcription-repair coupling factor [Neisseria meningitidis Z2491]
 gi|121052313|emb|CAM08643.1| transcription-repair coupling factor [Neisseria meningitidis Z2491]
          Length = 1296

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/453 (33%), Positives = 237/453 (52%), Gaps = 17/453 (3%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  L  R+  +   G    +     Q       +  T+ Q +AI  +++D++Q   M R
Sbjct: 717  ELLNLYARRAAQ--SGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDR 774

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++
Sbjct: 775  LVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLS 834

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                    + ALE +A G   I+IGTH L QD I++  + LVI+DE+HRFGV+Q+ +L +
Sbjct: 835  RFNNSKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNVGLVIIDEEHRFGVRQKEQLKR 894

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                  +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E + 
Sbjct: 895  LRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVL 953

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              L  G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  
Sbjct: 954  RELKRGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRD 1006

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F      +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL 
Sbjct: 1007 FLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLT 1066

Query: 597  HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
               ++K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+ 
Sbjct: 1067 PEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYT 1124

Query: 654  SLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             +L+ A +D K      PDL +  G +  I L+
Sbjct: 1125 EMLKQAVRDLKK--GHQPDLDAPLGITTEIKLH 1155


>gi|302522130|ref|ZP_07274472.1| ATP-dependent DNA helicase RecG [Streptomyces sp. SPB78]
 gi|302431025|gb|EFL02841.1| ATP-dependent DNA helicase RecG [Streptomyces sp. SPB78]
          Length = 768

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 149/504 (29%), Positives = 251/504 (49%), Gaps = 34/504 (6%)

Query: 20  GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYIS-- 77
           G   +  +++ +           DLL ++P  + +R    +++E+  +  VT+   ++  
Sbjct: 3   GPPTAKVMAEHL-----GLHTVGDLLHHYPRRYAERGELTRLAELPLDEHVTVVARVADA 57

Query: 78  QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137
           +  +F   + +  ++ + DG+G + L+FF R     ++    G +    GK+     ++ 
Sbjct: 58  RVHTFNAGRGKRLEVTITDGSGRLQLVFFGRGVHKPQHDLLPGTRAMFAGKVSVFNRKLQ 117

Query: 138 MVHPHYIFHNSQDVN-------FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
           + HP Y     +             +  +Y     L      K +   L       + + 
Sbjct: 118 LAHPAYELLAEESDAREAAGTWASSLLPIYPATAKLESWKIAKAVDAVLPSANEALDPLP 177

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
             L + +    + EA   IH P+   + E     R+RL +DE    Q AL   R    + 
Sbjct: 178 DSLREGRGLLPLPEALVKIHRPQSKAEVEAA---RDRLKWDEAFVLQTALARRRHADAQL 234

Query: 251 IGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
             +P               +PF+ T+ Q+   ++I  D++  + M R+LQG+VGSGKT+V
Sbjct: 235 PAVPRRPAPDGLLTAFDARLPFTLTEGQQKVSREIFDDLATDHPMHRLLQGEVGSGKTMV 294

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT-----------QNTQIIVEIITGN 358
           AL AM A V+AGGQA ++AP  +LAQQH+  I +                   V ++TG+
Sbjct: 295 ALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSITEMMGDLASGGTLGAAEHATGVVLLTGS 354

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QK 417
           M  A RRK L  +  G+A I+IGTHAL +D ++++ L LV+VDEQHRFGV+QR  L  + 
Sbjct: 355 MGAAARRKVLLDLVTGEAGIVIGTHALIEDVVKFHDLGLVVVDEQHRFGVEQRDALRSKG 414

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----IDEVIE 473
           A  PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI T ++P       +    E
Sbjct: 415 AQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAQDKPHFLARAWE 474

Query: 474 RLKVVLSEGKKAYWICPQIEEKKE 497
           R++  ++ G +AY +CP+I +++E
Sbjct: 475 RVREEVAAGHQAYVVCPRIGDEEE 498


>gi|313499733|gb|ADR61099.1| Mfd [Pseudomonas putida BIRD-1]
          Length = 1141

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  +   G                 PF  T  Q++
Sbjct: 544  WQKAKRKAAEQVRDVAAELLDIYARRAAR--KGYAFADPSADYATFSAGFPFEETPDQQA 601

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQHY 
Sbjct: 602  AIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHYN 661

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A   +A G+  I+IGTH L QD +++  L L I
Sbjct: 662  SFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGLAI 721

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 722  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVR 781

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   V E L   L  G + Y++   ++  +             L     + I 
Sbjct: 782  TFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 833

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+IE A+ FGLAQLHQL
Sbjct: 834  IGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQL 893

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      +S ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 894  RGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 953

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +      P+L    G    I L L
Sbjct: 954  GEGQSGQI--QAVGFTLYMEMLERAVKAIRK--GTQPNLEQPLGGGPEINLRL 1002


>gi|325142431|gb|EGC64835.1| transcription-repair coupling factor [Neisseria meningitidis
            961-5945]
 gi|325198436|gb|ADY93892.1| transcription-repair coupling factor [Neisseria meningitidis G2136]
          Length = 1375

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 237/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 798  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 857

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 858  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 917

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                + ALE +A G   I+IGTH L QD+I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 918  SKATKAALEGLADGTVDIVIGTHKLVQDNIRFKSLGLVIIDEEHRFGVRQKEQLKRLRAN 977

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 978  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 1036

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 1037 RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 1089

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 1090 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1149

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1150 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 1207

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1208 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1234


>gi|319426232|gb|ADV54306.1| transcription-repair coupling factor [Shewanella putrefaciens 200]
          Length = 1162

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/476 (32%), Positives = 246/476 (51%), Gaps = 19/476 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  W     + +     +A ++  +  R+Q +        ++ +   +  +  PF  T  
Sbjct: 559  NETWAKAKNKAIEKIRDVAAELLDVYARRQARPGE--SCQIDEEEYAQFAQGFPFEETVD 616

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            QESAI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQ
Sbjct: 617  QESAIHAVLADMRSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQ 676

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            HYE  K    +  ++ E+++       + + L+++  G+  I+IGTH L Q   ++  L 
Sbjct: 677  HYENFKDRFADWPVVTEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLG 736

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R 
Sbjct: 737  LLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRL 796

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             +KT +   + +  V E +   +  G + Y++   +E  +        +    L     +
Sbjct: 797  AVKTFVRESD-LATVREAILREILRGGQVYYLHNNVESIE-----KCAQGIIDLVPE--A 848

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGLAQL
Sbjct: 849  RVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQL 908

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR    +   L+   P  ++ ++  RL  +   ED   GF++A +DL+ R  G
Sbjct: 909  HQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDLEIRGAG 968

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            E+LG +QSG    +     L+  +LE A K  K    ++P L  +  Q   I L +
Sbjct: 969  ELLGDEQSGHISKIGFS--LYMEMLEAAVKALKQ--GKEPSLAQMLNQQCEIELRI 1020


>gi|170717838|ref|YP_001784898.1| transcription-repair coupling factor [Haemophilus somnus 2336]
 gi|168825967|gb|ACA31338.1| transcription-repair coupling factor [Haemophilus somnus 2336]
          Length = 1144

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/478 (32%), Positives = 255/478 (53%), Gaps = 19/478 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W     + +     +A ++  +  +++ K   G     + +  ++     PF 
Sbjct: 544  HKLGNDSWAKARHKAIEKIRDVAAELLDVYAQREVK--KGFAFQYDKEEFKQFAATFPFE 601

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q+ AI  ++ DM QK  M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 602  ETPDQKMAINAVISDMCQKKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 661

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ L+ +  G+  I+IGTH L Q  +++
Sbjct: 662  LAQQHYENFKDRFANLPVNVEMLSRFRTAKEQKQILQHLNEGKIDILIGTHKLIQSEVKF 721

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q  T   +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 722  SDLGLLIIDEEHRFGVSQKEKIKQLRTNIDILTLTATPIPRTLNMAMSGIRDLSIISTPP 781

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +  ++ +  + E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 782  ARRLSIKTFVRQVDDL-IIREAVLREILRGGQVYYLHNDVASIE-----NCAEKLTALVP 835

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A++FG
Sbjct: 836  E--ARVVVGHGQMRERELERVMSDFYHQRFNVLVCSTIIETGIDVPTANTIIIERADNFG 893

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL   P  ++K++  RL  L++ ++   GF++A  DL+ 
Sbjct: 894  LAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAVKRLEALESLDNLGAGFILATHDLEI 953

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            R  GE+LG +QSG  + +     L+  LLE A    K    ++P L ++  Q + I L
Sbjct: 954  RGAGELLGNEQSGQIESIGFS--LYMELLENAVAALKE--GREPSLDTLTQQQVEIDL 1007


>gi|239999138|ref|ZP_04719062.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            35/02]
 gi|268594974|ref|ZP_06129141.1| transcription-repair coupling factor [Neisseria gonorrhoeae 35/02]
 gi|268548363|gb|EEZ43781.1| transcription-repair coupling factor [Neisseria gonorrhoeae 35/02]
 gi|317164430|gb|ADV07971.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            TCDC-NG08107]
          Length = 1234

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/449 (33%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 655  LNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 714

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 715  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 774

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +    
Sbjct: 775  SKATKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLRAN 834

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 835  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 893

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 894  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 946

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 947  RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1006

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1007 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLK 1064

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1065 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1091


>gi|268684509|ref|ZP_06151371.1| transcription-repair coupling factor [Neisseria gonorrhoeae
            SK-92-679]
 gi|268624793|gb|EEZ57193.1| transcription-repair coupling factor [Neisseria gonorrhoeae
            SK-92-679]
          Length = 1241

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/449 (33%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 662  LNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 721

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 722  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 781

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +    
Sbjct: 782  SKATKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKERLKRLRAN 841

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 842  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 900

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 901  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 953

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 954  RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1013

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1014 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLK 1071

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1072 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1098


>gi|308389402|gb|ADO31722.1| transcription-repair coupling factor [Neisseria meningitidis
            alpha710]
          Length = 1227

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/453 (33%), Positives = 238/453 (52%), Gaps = 17/453 (3%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  L  R+  +   G    +     Q       +  T+ Q +AI  +++D++Q   M R
Sbjct: 648  ELLNLYARRAAQ--SGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDR 705

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++
Sbjct: 706  LVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLS 765

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                    + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +
Sbjct: 766  RFNNSKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKR 825

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                  +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E + 
Sbjct: 826  LRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVL 884

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              L  G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  
Sbjct: 885  RELKRGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRD 937

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F      +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL 
Sbjct: 938  FLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLT 997

Query: 597  HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
               ++K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+ 
Sbjct: 998  PEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYT 1055

Query: 654  SLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             +L+ A +D K    + PDL +  G +  I L+
Sbjct: 1056 EMLKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1086


>gi|330829926|ref|YP_004392878.1| transcription-repair coupling factor [Aeromonas veronii B565]
 gi|328805062|gb|AEB50261.1| Transcription-repair coupling factor [Aeromonas veronii B565]
          Length = 1157

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 161/485 (33%), Positives = 242/485 (49%), Gaps = 21/485 (4%)

Query: 210  HNPRKAK--DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
             NP   K     W+   R+       +A ++  +   +  +   G     + +  ++   
Sbjct: 548  DNPPSHKLGGEAWSKARRKAAEKVRDVAAELLDVYAHRAAR--AGFAFKHDKEAYRQFAA 605

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            + PF  T  Q +AI  +L DM Q   M R++ GDVG GKT VA+ A   AV  G Q  ++
Sbjct: 606  SFPFEETDDQLNAINAVLGDMCQAKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAVL 665

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +LAQQHY+  +    N  + VE+++       +   ++ +A G+  IIIGTH L  
Sbjct: 666  VPTTLLAQQHYDNFRDRFANWPVRVEVLSRFRSAKEQSAVMKELAEGKVDIIIGTHKLLG 725

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              + +  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 726  SELTFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMRDLSI 785

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
            I   PA R  IKT +   +    V E +   L  G + Y++   +E  +           
Sbjct: 786  IATPPAKRLAIKTFV-RQHEPAVVREAVLRELKRGGQVYYLHNDVESIE-----KCAADL 839

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              L     + I I HG+M + D E +M  F +    LL+ TT+IE GIDV  A+ II++ 
Sbjct: 840  AELVPE--ARIGIAHGQMRERDLERIMSDFYHQRFNLLVCTTIIETGIDVPSANTIIMDR 897

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
            A+H GLAQLHQLRGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A 
Sbjct: 898  ADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKLMTKDAAKRLEAIASLEDLGAGFALAT 957

Query: 623  EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
             DL+ R  GE+LG  QSG  +       L+  +LE A +  K+   ++P L  +  Q   
Sbjct: 958  HDLEIRGAGELLGDDQSGQIE--SVGFTLYMEMLEQAVEALKN--GKEPSLEQLMSQHTE 1013

Query: 683  ILLYL 687
            + L L
Sbjct: 1014 VELRL 1018


>gi|325128294|gb|EGC51178.1| transcription-repair coupling factor [Neisseria meningitidis N1568]
          Length = 1305

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 728  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 787

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 788  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 847

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 848  SKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 907

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 908  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 966

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 967  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 1019

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 1020 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1079

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1080 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 1137

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K      PDL +  G +  I L+
Sbjct: 1138 QAVRDLKK--GHQPDLDAPLGITTEIKLH 1164


>gi|90962332|ref|YP_536248.1| transcription-repair coupling factor [Lactobacillus salivarius
            UCC118]
 gi|90821526|gb|ABE00165.1| Transcription-repair coupling factor [Lactobacillus salivarius
            UCC118]
          Length = 1174

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 146/463 (31%), Positives = 249/463 (53%), Gaps = 20/463 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R      E +A ++  L  +++ +   G     +    ++     P++ T  Q 
Sbjct: 568  EWAKTKRRVANKIEDIADELVDLYAKREAE--KGYAFTPDDSYQKEFEDAFPYTETPDQL 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + K+I QDM +   M R+L GDVG GKT VAL A   AV+ G Q   +AP  +LAQQHY
Sbjct: 626  RSAKEIKQDMEKTKPMDRLLIGDVGYGKTEVALRAAFKAVQDGKQVAFLAPTTVLAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +++  +N  + + I++        ++ +E +  G+  I++GTH L    +++  L L+
Sbjct: 686  ETMEQRFENFPVEIGILSRFNTAKEIKETIENLETGKLDIVVGTHRLLSKDVKFADLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L +  T+  VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746  IIDEEQRFGVKHKERLKELKTSVDVLTLTATPIPRTLNMSMLGVRDLSVIETAPMNRYPI 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T +I  N    +++ +K  +  G + +++  ++++ ++           SL     + +
Sbjct: 806  QTYVIEKN-YGVIVDGIKREIERGGQVFYLHNRVDDIEKVAS-----ELESLVPE--AKV 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A IHGRM++   E+++  F +G   +L+ TT+IE G+D+ + + + ++NA+  GL+QL+Q
Sbjct: 858  AYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRMGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+    +Y P   L++ +  RL  +K+      GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSNRIAYAYFMYQPNKVLTEVAEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI-LTQDPDL 673
            LG +Q G    +     L+  +L   +A+K  K I +  D +L
Sbjct: 978  LGKQQHGFIDSVGYD--LYTQMLNDAVAKKRGKEIKVKTDAEL 1018


>gi|148548800|ref|YP_001268902.1| transcription-repair coupling factor [Pseudomonas putida F1]
 gi|148512858|gb|ABQ79718.1| transcription-repair coupling factor [Pseudomonas putida F1]
          Length = 1149

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  +   G                 PF  T  Q++
Sbjct: 552  WQKAKRKAAEQVRDVAAELLDIYARRAAR--KGYAFADPSADYATFSAGFPFEETPDQQA 609

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQHY 
Sbjct: 610  AIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHYN 669

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A   +A G+  I+IGTH L QD +++  L L I
Sbjct: 670  SFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGLAI 729

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 730  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVR 789

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   V E L   L  G + Y++   ++  +             L     + I 
Sbjct: 790  TFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 841

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+IE A+ FGLAQLHQL
Sbjct: 842  IGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQL 901

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      +S ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 902  RGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 961

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +      P+L    G    I L L
Sbjct: 962  GEGQSGQI--QAVGFTLYMEMLERAVKAIRK--GTQPNLEQPLGGGPEINLRL 1010


>gi|121634996|ref|YP_975241.1| transcription-repair coupling factor [Neisseria meningitidis FAM18]
 gi|120866702|emb|CAM10454.1| transcription-repair coupling factor [Neisseria meningitidis FAM18]
 gi|325138289|gb|EGC60858.1| transcription-repair coupling factor [Neisseria meningitidis ES14902]
          Length = 1375

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 237/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 798  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 857

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 858  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 917

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                + ALE +A G   I+IGTH L QD+I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 918  SKATKAALEGLADGTVDIVIGTHKLVQDNIRFKSLGLVIIDEEHRFGVRQKEQLKRLRAN 977

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 978  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 1036

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 1037 RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 1089

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 1090 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1149

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1150 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 1207

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1208 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1234


>gi|325277315|ref|ZP_08142941.1| transcription-repair coupling factor [Pseudomonas sp. TJI-51]
 gi|324097550|gb|EGB95770.1| transcription-repair coupling factor [Pseudomonas sp. TJI-51]
          Length = 1149

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  +   G                 PF  T  Q++
Sbjct: 552  WQKAKRKAAEQVRDVAAELLDIYARRAAR--KGYAFADPSADYATFSAGFPFEETPDQQA 609

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQHY 
Sbjct: 610  AIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHYN 669

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A   +A G+  I+IGTH L QD +++  L L I
Sbjct: 670  SFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGLAI 729

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 730  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVR 789

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   V E L   L  G + Y++   ++  +             L     + I 
Sbjct: 790  TFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 841

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+IE A+ FGLAQLHQL
Sbjct: 842  IGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQL 901

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      +S ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 902  RGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 961

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +      P+L    G    I L L
Sbjct: 962  GEGQSGQI--QAVGFTLYMEMLERAVKAIRK--GTQPNLEQPLGGGPEINLRL 1010


>gi|26988872|ref|NP_744297.1| transcription-repair coupling factor [Pseudomonas putida KT2440]
 gi|24983679|gb|AAN67761.1|AE016407_5 transcription-repair coupling factor [Pseudomonas putida KT2440]
          Length = 1149

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  +   G                 PF  T  Q++
Sbjct: 552  WQKAKRKAAEQVRDVAAELLDIYARRAAR--KGYAFADPSADYATFSAGFPFEETPDQQA 609

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQHY 
Sbjct: 610  AIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHYN 669

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A   +A G+  I+IGTH L QD +++  L L I
Sbjct: 670  SFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGLAI 729

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 730  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVR 789

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   V E L   L  G + Y++   ++  +             L     + I 
Sbjct: 790  TFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 841

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+IE A+ FGLAQLHQL
Sbjct: 842  IGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQL 901

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      +S ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 902  RGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 961

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +      P+L    G    I L L
Sbjct: 962  GEGQSGQI--QAVGFTLYMEMLERAVKAIRK--GTQPNLEQPLGGGPEINLRL 1010


>gi|325202005|gb|ADY97459.1| transcription-repair coupling factor [Neisseria meningitidis
            M01-240149]
 gi|325208243|gb|ADZ03695.1| transcription-repair coupling factor [Neisseria meningitidis
            NZ-05/33]
          Length = 1227

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/453 (33%), Positives = 238/453 (52%), Gaps = 17/453 (3%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  L  R+  +   G    +     Q       +  T+ Q +AI  +++D++Q   M R
Sbjct: 648  ELLNLYARRAAQ--SGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDR 705

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++
Sbjct: 706  LVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLS 765

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                    + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +
Sbjct: 766  RFNNSKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKR 825

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                  +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E + 
Sbjct: 826  LRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVL 884

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              L  G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  
Sbjct: 885  RELKRGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRD 937

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F      +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL 
Sbjct: 938  FLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLT 997

Query: 597  HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
               ++K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+ 
Sbjct: 998  PEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYT 1055

Query: 654  SLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             +L+ A +D K    + PDL +  G +  I L+
Sbjct: 1056 EMLKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1086


>gi|323526062|ref|YP_004228215.1| transcription-repair coupling factor [Burkholderia sp. CCGE1001]
 gi|323383064|gb|ADX55155.1| transcription-repair coupling factor [Burkholderia sp. CCGE1001]
          Length = 1160

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/479 (32%), Positives = 233/479 (48%), Gaps = 19/479 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +W    R+        A ++  L  R+  +      +    K   K   +  F 
Sbjct: 548  HSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAARSGHAFALEP--KDYVKFAESFGFE 605

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +
Sbjct: 606  ETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTL 665

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QH +       +  + +  ++          A+++I  G   I+IGTH L    +Q+
Sbjct: 666  LAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIQQINEGSVDIVIGTHKLLSSDVQF 725

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P
Sbjct: 726  KRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAP 785

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  IKT +        + E +   L  G + Y++  ++E  +     +  +   +L  
Sbjct: 786  QKRLAIKTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRRQMLEALVP 839

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IA+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FG
Sbjct: 840  E--ARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRADKFG 897

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ 
Sbjct: 898  LAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEI 957

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE+LG KQSG    +  Q  L+  +L  A K  K    ++PDLT+    +  I L+
Sbjct: 958  RGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKD--GKEPDLTAPLAATTEINLH 1012


>gi|146293254|ref|YP_001183678.1| transcription-repair coupling factor [Shewanella putrefaciens CN-32]
 gi|145564944|gb|ABP75879.1| transcription-repair coupling factor [Shewanella putrefaciens CN-32]
          Length = 1162

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/476 (32%), Positives = 245/476 (51%), Gaps = 19/476 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  W     + +     +A ++  +  R+Q +        ++ +   +  +  PF  T  
Sbjct: 559  NETWAKAKNKAIEKIRDVAAELLDVYARRQARPGE--SCEIDEEEYAQFAQGFPFEETVD 616

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            QESAI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQ
Sbjct: 617  QESAIHAVLADMRSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQ 676

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            HYE  K    +  ++ E+++       + + L+++  G+  I+IGTH L Q   ++  L 
Sbjct: 677  HYENFKDRFADWPVVTEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLG 736

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R 
Sbjct: 737  LLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRL 796

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             +KT +   +    V E +   +  G + Y++   +E  +        +    L     +
Sbjct: 797  AVKTFVRESD-PATVREAILREILRGGQVYYLHNNVESIE-----KCAQGIIDLVPE--A 848

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGLAQL
Sbjct: 849  RVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQL 908

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR    +   L+   P  ++ ++  RL  +   ED   GF++A +DL+ R  G
Sbjct: 909  HQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDLEIRGAG 968

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            E+LG +QSG    +     L+  +LE A K  K    ++P L  +  Q   I L +
Sbjct: 969  ELLGDEQSGHISKIGFS--LYMEMLEAAVKALKQ--GKEPSLAQMLNQQCEIELRI 1020


>gi|316984071|gb|EFV63049.1| transcription-repair coupling factor [Neisseria meningitidis H44/76]
          Length = 1235

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 236/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 658  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 717

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 718  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 777

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 778  SKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 837

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 838  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLSVKTFVKPFSE-GSVREAVLRELK 896

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 897  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 949

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 950  RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1009

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1010 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 1067

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1068 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1094


>gi|117920732|ref|YP_869924.1| transcription-repair coupling factor [Shewanella sp. ANA-3]
 gi|117613064|gb|ABK48518.1| transcription-repair coupling factor [Shewanella sp. ANA-3]
          Length = 1160

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     + +     +A ++  +  R+Q +       ++  +   +  +  PF  T  QES
Sbjct: 560  WAKAKNKAIEKIRDVAAELLDVYARRQARPGE--SCDINDEEYAQFAQGFPFEETVDQES 617

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQHYE
Sbjct: 618  AIHAVLADMQSPVAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYE 677

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  +++E+++       + + L+ +  G+  I+IGTH L Q   ++  L L+I
Sbjct: 678  NFKDRFADWPVVIEVMSRFRTAKEQTQVLKLLEEGKVDIVIGTHKLLQSEAKFENLGLLI 737

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 738  IDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVK 797

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    V E +   +  G + Y++   +E  +        +  ++L     + + 
Sbjct: 798  TFVRESD-PATVREAILREILRGGQVYYLHNNVETIE-----KCAQDISTLLPE--ARVV 849

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 850  VAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQL 909

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   L+   P  ++ ++  RL  +   ED   GF++A +DL+ R  GE+L
Sbjct: 910  RGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELL 969

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG    +     L+  +LE A K  K    ++P L  +  Q   + L +
Sbjct: 970  GDEQSGHISKIGFS--LYMEMLESAVKALKQ--GKEPSLAQMLNQQCEMELRI 1018


>gi|15612632|ref|NP_240935.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans
            C-125]
 gi|10172681|dbj|BAB03788.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans
            C-125]
          Length = 1181

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 147/482 (30%), Positives = 243/482 (50%), Gaps = 21/482 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R   +  E +A  +  L   ++     G     +G    +   + P+  T+ Q 
Sbjct: 573  DWKKVKRRVQSSVEDIADDLIKLYAEREA--SKGFAFAPDGPEQAEFEASFPYQETEDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI++I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  I+ P  ILAQQH+
Sbjct: 631  RAIQEIKEDMEKERPMDRLLCGDVGYGKTEVAIRAAFKAIMNGKQVAILVPTTILAQQHF 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++   +  I + +++    +  + + L+ +  G   +++GTH L    +Q+  L L+
Sbjct: 691  ETIQERFADYPINIGVLSRFRSRKEQSQTLKGLKAGSVDLVVGTHRLLSKDVQFKDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 751  IVDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  LS G + Y++  ++E     N   +    + L     + +
Sbjct: 811  QTYVVEYNS-PLVREAIERELSRGGQVYFLYNRVE-----NIERMANEISMLVPD--ARV 862

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            +  HG+M + + ES+M +F  G   +L+ TT+IE G+D+ + + +II  A+  GL+QL+Q
Sbjct: 863  SFAHGQMKESELESIMLAFLEGESDVLVTTTIIETGVDIPNVNTLIIHGADKMGLSQLYQ 922

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            +RGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 923  IRGRVGRSNRVAYAYFTYQRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLAIRGAGNL 982

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +Q G  + +     L+  +L+ A +  K    + P     R   I + +  Y  +  
Sbjct: 983  LGAQQHGFIESVGFD--LYSQMLKEAIEKRK---GEQPK-EEPRNVEIDVQVDAYIPDSY 1036

Query: 694  FQ 695
             Q
Sbjct: 1037 IQ 1038


>gi|84386598|ref|ZP_00989624.1| transcription-repair coupling factor [Vibrio splendidus 12B01]
 gi|84378404|gb|EAP95261.1| transcription-repair coupling factor [Vibrio splendidus 12B01]
          Length = 1153

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 146/473 (30%), Positives = 237/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    +        +A ++  +  +++ K   G    ++           PF  T  Q  
Sbjct: 553  WQKARKRAAEKVRDVAAELLDVYAKRELK--PGYKFVLDRGQYATFKSGFPFEETDDQAM 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  ++ DM Q   M R++ GDVG GKT VA+ A     +   Q  ++ P  +LAQQH+E
Sbjct: 611  AINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVCTDNSKQVAVLVPTTLLAQQHFE 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       ++  ++ +  G+  I++GTH L    +++  L L++
Sbjct: 671  NFRDRFANQPIRVEVLSRFKSAKEQKLIMQDVTDGKVDILVGTHKLLSSDLKFKDLGLLV 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 731  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    V E +   +  G + Y++  Q++  +        E    L     + + 
Sbjct: 791  TFVRESDD-AIVREAVLREIMRGGQVYFLHNQVDTIE-----KTAESLQKLIPE--ARVT 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E +M+ F +    LL+ TT+IE GIDV  A+ I+++ A++ GLAQLHQL
Sbjct: 843  VAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTILMDRADNLGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPPPKAMTKDAVKRLDAIASLEDLGAGFTLATHDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   I + L
Sbjct: 963  GDEQSGQI--QSVGFTLYMEMLEQAVEALKE--GREPSLDDLLREQTEIEMRL 1011


>gi|307729622|ref|YP_003906846.1| transcription-repair coupling factor [Burkholderia sp. CCGE1003]
 gi|307584157|gb|ADN57555.1| transcription-repair coupling factor [Burkholderia sp. CCGE1003]
          Length = 1161

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/479 (32%), Positives = 233/479 (48%), Gaps = 19/479 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +W    R+        A ++  L  R+  +      +    K   K   +  F 
Sbjct: 548  HSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAARSGHAFALEP--KDYVKFAESFGFE 605

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +
Sbjct: 606  ETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTL 665

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QH +       +  + +  ++          A+++I  G   I+IGTH L    +Q+
Sbjct: 666  LAEQHTQTFSDRFSDWPVRIAELSRFKSTKEVNAAIQQINEGSVDIVIGTHKLLSSDVQF 725

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P
Sbjct: 726  KRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAP 785

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  IKT +        + E +   L  G + Y++  ++E  +     +  +   +L  
Sbjct: 786  QKRLAIKTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRRQMLEALVP 839

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IA+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FG
Sbjct: 840  E--ARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRADKFG 897

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ 
Sbjct: 898  LAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEI 957

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE+LG KQSG    +  Q  L+  +L  A K  K    ++PDLT+    +  I L+
Sbjct: 958  RGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKD--GKEPDLTAPLAATTEINLH 1012


>gi|301300308|ref|ZP_07206515.1| transcription-repair coupling factor [Lactobacillus salivarius
            ACS-116-V-Col5a]
 gi|300852081|gb|EFK79758.1| transcription-repair coupling factor [Lactobacillus salivarius
            ACS-116-V-Col5a]
          Length = 1174

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 146/463 (31%), Positives = 249/463 (53%), Gaps = 20/463 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R      E +A ++  L  +++ +   G     +    ++     P++ T  Q 
Sbjct: 568  EWAKTKRRVANKIEDIADELVDLYAKREAE--KGYAFTPDDSYQKEFEDAFPYTETPDQL 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + K+I QDM +   M R+L GDVG GKT VAL A   AV+ G Q   +AP  +LAQQHY
Sbjct: 626  RSAKEIKQDMEKTKPMDRLLIGDVGYGKTEVALRAAFKAVQDGKQVAFLAPTTVLAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +++  +N  + + I++        ++ +E +  G+  I++GTH L    +++  L L+
Sbjct: 686  ETMEQRFENFPVEIGILSRFNTAKEIKETIENLETGKLDIVVGTHRLLSKDVKFADLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L +  T+  VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746  IIDEEQRFGVKHKERLKELKTSVDVLTLTATPIPRTLNMSMLGVRDLSVIETAPMNRYPI 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T +I  N    +++ +K  +  G + +++  ++++ ++           SL     + +
Sbjct: 806  QTYVIEKN-YGVIVDGIKREIERGGQVFYLHNRVDDIEKVAS-----ELESLVPE--AKV 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A IHGRM++   E+++  F +G   +L+ TT+IE G+D+ + + + ++NA+  GL+QL+Q
Sbjct: 858  AYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRKGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+    +Y P   L++ +  RL  +K+      GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSNRIAYAYFMYQPNKVLTEVAEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI-LTQDPDL 673
            LG +Q G    +     L+  +L   +A+K  K I +  D +L
Sbjct: 978  LGKQQHGFIDSVGYD--LYTQMLNDAVAKKRGKEIKVKTDAEL 1018


>gi|240016396|ref|ZP_04722936.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            FA6140]
 gi|240125910|ref|ZP_04738796.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            SK-92-679]
          Length = 1234

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/449 (33%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 655  LNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 714

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 715  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 774

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +    
Sbjct: 775  SKATKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKERLKRLRAN 834

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 835  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 893

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 894  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 946

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 947  RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1006

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1007 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLK 1064

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1065 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1091


>gi|238758409|ref|ZP_04619586.1| Transcription-repair-coupling factor [Yersinia aldovae ATCC 35236]
 gi|238703313|gb|EEP95853.1| Transcription-repair-coupling factor [Yersinia aldovae ATCC 35236]
          Length = 1148

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 241/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G     + +  Q   ++ PF  T  QE 
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAK--AGFKFKHDREQYQLFCQSFPFETTPDQEQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       + +E+++       ++  L + A G+  IIIGTH L Q  + ++ L L+I
Sbjct: 668  NFRDRFATWPVRIEMMSRFRSAKEQQVILGQAAEGKVDIIIGTHKLLQSDLHWHDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N     +R   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIEKATQRLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     L+  LLE A    K    ++P L  +      I + +
Sbjct: 960  GEDQSGQMTTIGFS--LYMELLESAVDALKE--GREPSLEDLTSNQTEIEMRM 1008


>gi|113461304|ref|YP_719373.1| transcription-repair coupling factor [Haemophilus somnus 129PT]
 gi|112823347|gb|ABI25436.1| transcription-repair coupling factor [Haemophilus somnus 129PT]
          Length = 1143

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 256/480 (53%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W     + +     +A ++  +  +++ K   G     + +  ++     PF 
Sbjct: 543  HKLGNDSWAKARHKAIEKIRDVAAELLDVYAQREVK--KGFAFQYDKEEFKQFAATFPFE 600

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q+ AI  ++ DM Q+  M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 601  ETPDQKMAINAVISDMCQEKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 660

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ L+ +  G+  I+IGTH L Q  +++
Sbjct: 661  LAQQHYENFKDRFANLPVNVEMLSRFRTAKEQKQILQHLNEGKIDILIGTHKLIQSEVKF 720

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q  T   +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 721  SDLGLLIIDEEHRFGVSQKEKIKQLRTNIDILTLTATPIPRTLNMAMSGIRDLSIISTPP 780

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +  ++ +  + E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 781  ARRLSIKTFVRQVDDL-IIREAVLREILRGGQVYYLHNDVASIE-----NCAEKLTALVP 834

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A++FG
Sbjct: 835  E--ARVVVGHGQMRERELERVMSDFYHQRFNVLVCSTIIETGIDVPTANTIIIERADNFG 892

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL   P  ++K++  RL  L++ ++   GF++A  DL+ 
Sbjct: 893  LAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAVKRLEALESLDNLGAGFILATHDLEI 952

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LLE A    K    ++P L ++  Q + I L +
Sbjct: 953  RGAGELLGNEQSGQIESIGFS--LYMELLENAVAALKE--GREPSLDTLTQQQVEIDLRV 1008


>gi|304387420|ref|ZP_07369611.1| transcription-repair coupling factor [Neisseria meningitidis ATCC
            13091]
 gi|304338513|gb|EFM04632.1| transcription-repair coupling factor [Neisseria meningitidis ATCC
            13091]
          Length = 1301

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 236/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 724  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 783

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 784  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFSDRFADFPVKVAGLSRFNN 843

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 844  SKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 903

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 904  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 962

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 963  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 1015

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 1016 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1075

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1076 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 1133

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1134 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1160


>gi|209520701|ref|ZP_03269451.1| transcription-repair coupling factor [Burkholderia sp. H160]
 gi|209498863|gb|EDZ98968.1| transcription-repair coupling factor [Burkholderia sp. H160]
          Length = 1159

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 155/479 (32%), Positives = 236/479 (49%), Gaps = 19/479 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +W    R+        A ++  L  R+  ++     +    K   K   +  F 
Sbjct: 548  HSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAAREGHAFALEP--KDYVKFAESFGFE 605

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +
Sbjct: 606  ETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTL 665

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QH +       +  + +  ++          A+++I  G   I+IGTH L    +Q+
Sbjct: 666  LAEQHTQTFSDRFSDWPVRIAELSRFKSTKEVNAAIQQINEGAVDIVIGTHKLLSSDVQF 725

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P
Sbjct: 726  KRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAP 785

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  IKT +        + E +   L  G + Y++  ++E  +     +  +   +L  
Sbjct: 786  QKRLAIKTFV-RREEDGVIREAMLRELKRGGQVYFLHNEVETIE-----NRRQMLEALVP 839

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IA+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  ++ FG
Sbjct: 840  E--ARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRSDKFG 897

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ 
Sbjct: 898  LAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEI 957

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE+LG KQSG  + +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 958  RGTGEVLGDKQSGEIQEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1012


>gi|332971662|gb|EGK10611.1| transcription-repair coupling factor [Psychrobacter sp. 1501(2011)]
          Length = 1243

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 158/472 (33%), Positives = 241/472 (51%), Gaps = 19/472 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++ L     +A ++  +  R+Q K+ I     V+    +       F  T  Q +
Sbjct: 638  WDKAKQKALEQIHDVAAELLNMQARRQAKEGIH--FKVDTAQYELFASQFAFEETPDQAN 695

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LA QH +
Sbjct: 696  AIDAVIHDMKQSKPMDRLICGDVGFGKTEVAMRAAFIAVNSGYQVAVLVPTTLLAGQHED 755

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  I VE ++    + ++ + LE +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 756  NFKDRFADWPIKVETLSRFGGKKYQDQVLEDLAAGKVDIVIGTHKLLQKDVKFANLGLMI 815

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ +  +    +    L MTATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 816  VDEEHRFGVRHKELIKALQSDVDSLSMTATPIPRTLNMALTGMRDMSIIATPPARRLAIK 875

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++       + E +   L  G + Y +   +   +      + E    L     + + 
Sbjct: 876  TFVMQKTN-QLMKEAILRELLRGGQVYLLHNDVASIE-----RMAENIRELVPE--ARVG 927

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M++   E VM  F +    +L+ TT+IE GIDV +A+ IIIE A+ FGLAQLHQL
Sbjct: 928  VAHGQMNERGLEQVMQQFYHKKFNVLVCTTIIETGIDVPNANTIIIERADKFGLAQLHQL 987

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR    + C LL      L  ++  RL+ ++       GF++A EDL+ R  GEIL
Sbjct: 988  RGRVGRSHHQAYCYLLVPSIKGLKGDAKKRLNAIERANTLGAGFMLASEDLEIRGAGEIL 1047

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            G +QSG  + +     +   +LE A K  K    ++PDL +    +  I L+
Sbjct: 1048 GKQQSGNMQAIGFSLYMD--MLERATKAIKA--GKEPDLNTPLSLTSDINLH 1095


>gi|91783503|ref|YP_558709.1| transcription-repair coupling factor [Burkholderia xenovorans LB400]
 gi|91687457|gb|ABE30657.1| transcription-repair coupling factor [Burkholderia xenovorans LB400]
          Length = 1160

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/479 (32%), Positives = 232/479 (48%), Gaps = 19/479 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +W    R+        A ++  L  R+  +      +    K   K   +  F 
Sbjct: 548  HSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAARSGHAFALEP--KDYVKFAESFGFE 605

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +
Sbjct: 606  ETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTL 665

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QH +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+
Sbjct: 666  LAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIHQINEGTVDIVIGTHKLLSSDVQF 725

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P
Sbjct: 726  KRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAP 785

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  IKT +        + E +   L  G + Y++  ++E  +     +  +   +L  
Sbjct: 786  QKRLAIKTFV-RREEDSVIREAMLRELKRGGQVYFLHNEVETIE-----NRRQMLEALVP 839

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IA+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FG
Sbjct: 840  E--ARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRADKFG 897

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ 
Sbjct: 898  LAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEI 957

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE+LG KQSG    +  Q  L+  +L  A K  K    ++PDLT+    +  I L+
Sbjct: 958  RGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKE--GKEPDLTAPLAATTEINLH 1012


>gi|70729336|ref|YP_259073.1| transcription-repair coupling factor [Pseudomonas fluorescens Pf-5]
 gi|68343635|gb|AAY91241.1| transcription-repair coupling factor [Pseudomonas fluorescens Pf-5]
          Length = 1149

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/473 (33%), Positives = 236/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q+S
Sbjct: 552  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFPFEETPDQQS 609

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I+ + +DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 610  TIEAVREDMLSGKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTTLLAQQHYN 669

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI
Sbjct: 670  SFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVI 729

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 730  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 789

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   V E L   L  G + Y++   ++  +             L     + I 
Sbjct: 790  TFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 841

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 842  IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 901

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 902  RGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 961

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L L
Sbjct: 962  GDGQSGQI--QAVGFTLYMEMLERAVKAIRK--GEQPNLDQPLGGGPEINLRL 1010


>gi|325204285|gb|ADY99738.1| transcription-repair coupling factor [Neisseria meningitidis
            M01-240355]
          Length = 1374

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/449 (33%), Positives = 233/449 (51%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 797  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 856

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 857  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 916

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 917  SKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 976

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 977  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 1035

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +         R  +L     + I + HG++ + + E VM  F   
Sbjct: 1036 RGGQVFFLHNEVDTIENMRG-----RLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 1088

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 1089 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1148

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1149 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLK 1206

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1207 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1233


>gi|239993080|ref|ZP_04713604.1| transcription-repair coupling factor [Alteromonas macleodii ATCC
           27126]
          Length = 984

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/496 (32%), Positives = 240/496 (48%), Gaps = 20/496 (4%)

Query: 198 SFPSIAEAFNIIHNPRKA-KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
              S     +    P  A     WT   ++       +A ++  +  R+  K      IN
Sbjct: 364 HLISRYTGGDADSAPVSALGSDAWTKAKQKAAEKVRDVAAELLDVYARRAAKPGFAYKIN 423

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            +    Q    + PF  T  Q  AI  ++ DM   + M R++ GDVG GKT VA+ A   
Sbjct: 424 WDD--YQAFSDSFPFEETPDQAQAIAAVMHDMGSPSAMDRLVCGDVGFGKTEVAMRAAFL 481

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           A  AG Q  I+ P  +LAQQHYE  K         +E+++  +    ++  +ERI  G+ 
Sbjct: 482 AANAGKQVAILVPTTLLAQQHYENFKDRFAAWPFEIEVMSRFVSGKAQKSVVERIGEGKV 541

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I++GTH L    I+Y  L LVI+DE+HRFGV+Q+ KL        +L +TATPIPRTL 
Sbjct: 542 DIVVGTHKLLSSDIKYKDLGLVIIDEEHRFGVRQKEKLKSLRADVDILTLTATPIPRTLN 601

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +   G  D+S I   PA R  IKT +   N+   + E +   +  G + Y++  +++   
Sbjct: 602 MALSGMRDLSIIATAPARRLSIKTFVQQRNK-AVIREAIMREILRGGQVYFLHNEVDSI- 659

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                   E    +     + IA+ HG+M + + E VM  F +    +L+ TT+IE GID
Sbjct: 660 ----ARTAEEIAEIVPE--ARIAVGHGQMRERELEGVMSDFYHQRYNVLVCTTIIETGID 713

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
           V  A+ II++ A+H GLAQLHQLRGRVGR    +   LL   P  ++K++  RL  +   
Sbjct: 714 VPSANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISQL 773

Query: 615 ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           ED   GF +A  DL+ R  GE+LG  QSG    +     +   +L+ A    K    ++P
Sbjct: 774 EDLGAGFALATHDLEIRGAGELLGDDQSGQIASIGFSLYMD--MLDKAVNALKE--GREP 829

Query: 672 DLTSVRGQSIRILLYL 687
            L         + L +
Sbjct: 830 SLDDATSGHTEVELRI 845


>gi|187923864|ref|YP_001895506.1| transcription-repair coupling factor [Burkholderia phytofirmans PsJN]
 gi|187715058|gb|ACD16282.1| transcription-repair coupling factor [Burkholderia phytofirmans PsJN]
          Length = 1160

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/479 (32%), Positives = 234/479 (48%), Gaps = 19/479 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +W    R+        A ++  L  R+  ++     +    K   K   +  F 
Sbjct: 548  HSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRALRQGHAFALEP--KDYVKFAESFGFE 605

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +
Sbjct: 606  ETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTL 665

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QH +       +  + +  ++          A+++I  G   I+IGTH L    +Q+
Sbjct: 666  LAEQHTQTFSDRFSDWPVRIAELSRFKSTKEVSAAIQQINEGTVDIVIGTHKLLSSDVQF 725

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P
Sbjct: 726  KRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAP 785

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  IKT +        + E +   L  G + Y++  ++E  +     +  +   +L  
Sbjct: 786  QKRLAIKTFV-RREEDSVIREAMLRELKRGGQVYFLHNEVETIE-----NRRQMLEALVP 839

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IA+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FG
Sbjct: 840  E--ARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRADKFG 897

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ 
Sbjct: 898  LAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEI 957

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE+LG KQSG    +  Q  L+  +L  A K  K    ++PDLT+    +  I L+
Sbjct: 958  RGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKE--GKEPDLTAPLAATTEINLH 1012


>gi|148980820|ref|ZP_01816230.1| transcription-repair coupling factor [Vibrionales bacterium SWAT-3]
 gi|145961055|gb|EDK26376.1| transcription-repair coupling factor [Vibrionales bacterium SWAT-3]
          Length = 1153

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 147/473 (31%), Positives = 237/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    +        +A ++  +  +++ K   G    ++           PF  T  Q  
Sbjct: 553  WQKARKRAAEKVRDVAAELLDVYAKRELK--PGYKFVLDRGQYATFKSGFPFEETDDQAM 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  ++ DM Q   M R++ GDVG GKT VA+ A     +   Q  ++ P  +LAQQH+E
Sbjct: 611  AINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVCTDNSKQVAVLVPTTLLAQQHFE 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       ++  ++ +A G+  I++GTH L    I++  L L+I
Sbjct: 671  NFRDRFANLPIRVEVLSRFKSAKEQKAIMQDVADGKVDILVGTHKLLSSDIKFKDLGLLI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 731  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    V E +   +  G + Y++  Q++  +        E    L     + + 
Sbjct: 791  TFVRQSDD-AVVREAVLREIMRGGQVYFLHNQVDTIE-----KTAESLQKLIPE--ARVT 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E +M+ F +    LL+ TT+IE GIDV  A+ I+++ A++ GLAQLHQL
Sbjct: 843  VAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTILMDRADNLGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   I + +
Sbjct: 963  GDEQSGQI--QSVGFTLYMEMLEQAVEALKE--GREPSLDDLLREQTEIEMRI 1011


>gi|127512559|ref|YP_001093756.1| transcription-repair coupling factor [Shewanella loihica PV-4]
 gi|126637854|gb|ABO23497.1| transcription-repair coupling factor [Shewanella loihica PV-4]
          Length = 1160

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 161/470 (34%), Positives = 246/470 (52%), Gaps = 22/470 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  WT   R+ +     +A ++  +  R+Q +        ++ +   +   + PF  T  
Sbjct: 555  NESWTKAKRKAIEKIRDVAAELLDVYARRQARPGE--ACRLDREEYAQFAGSFPFEETVD 612

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            QE+AI  +L DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQ
Sbjct: 613  QETAIDAVLTDMCSPISMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTLLAQQ 672

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            HYE  K    +  I +E+++       ++  L+++  GQ  I+IGTH L Q   ++  L 
Sbjct: 673  HYENFKDRFADWPIKIEVMSRFKTAKEQQAVLKQLELGQVDIVIGTHKLLQSEAKFENLG 732

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R 
Sbjct: 733  LLIIDEEHRFGVRQKEKIKALRANIDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRL 792

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
             +KT +   +    V E L   +  G + Y++   +E  +        +R   +      
Sbjct: 793  AVKTFVREYDD-ATVREALLREILRGGQVYFLHNSVETIE--------KRAREIEALLPE 843

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + +   HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ IIIE A++FGLAQ
Sbjct: 844  ARVVTAHGQMRERDLEKVMSDFYHQKYNVLVCTTIIETGIDVPSANTIIIERADNFGLAQ 903

Query: 576  LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
            LHQLRGRVGR    +   L+   P  ++K++  RL  +   ED   GF++A +DL+ R  
Sbjct: 904  LHQLRGRVGRSHHQAYAYLMMPHPKRMTKDAIKRLEAIGALEDLGAGFMLATQDLEIRGA 963

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS-VRGQ 679
            GE+LG +QSG    +     L+  +LE A K  K    ++P L   +RGQ
Sbjct: 964  GELLGDEQSGHISKI--GFTLYMEMLEDAVKSLKE--GKEPSLDQMLRGQ 1009


>gi|332162083|ref|YP_004298660.1| transcription-repair coupling factor [Yersinia enterocolitica subsp.
            palearctica 105.5R(r)]
 gi|325666313|gb|ADZ42957.1| transcription-repair coupling factor [Yersinia enterocolitica subsp.
            palearctica 105.5R(r)]
          Length = 1148

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G     + +  Q   ++ PF  T  QE 
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAK--SGFKFKFDREQYQLFCQSFPFETTPDQEQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM +   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       + +E+++       ++  LE+ A G+  IIIGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFATWPVRIEMMSRFRSAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWQDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N     ++   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIEKATQKLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     L+  LLE A    K    ++P L  +      I + +
Sbjct: 960  GEDQSGQMTTIGFS--LYMELLESAVDALKE--GREPSLEDLTSNQTEIEMRM 1008


>gi|254673347|emb|CBA08563.1| transcription-repair coupling factor [Neisseria meningitidis
            alpha275]
          Length = 1375

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 237/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 798  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 857

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 858  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 917

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                + ALE +A G   I+IGTH L QD+I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 918  SKATKAALEGLADGTVDIVIGTHKLVQDNIRFKSLGLVIIDEEHRFGVRQKEQLKRLRAN 977

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 978  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 1036

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 1037 RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 1089

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 1090 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1149

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1150 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 1207

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1208 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1234


>gi|37526705|ref|NP_930049.1| transcription-repair coupling factor [Photorhabdus luminescens subsp.
            laumondii TTO1]
 gi|36786137|emb|CAE15189.1| transcription-repair coupling factor (TRCF) [Photorhabdus luminescens
            subsp. laumondii TTO1]
          Length = 1148

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++       +A ++  +   +  K   G     + +  Q   ++ PF  T  QE 
Sbjct: 549  WNKARQKAAEKVRDVAAELLDIYAHRAVK--PGFAFKHDWEQYQLFCQSFPFETTPDQEQ 606

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ +   AV    Q  ++ P  +LAQQH++
Sbjct: 607  AINAVLNDMCQPIAMDRLICGDVGFGKTEVAMRSAFLAVHNDKQVAVLVPTTLLAQQHFD 666

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+I+       +++ +E  A G+  IIIGTH L Q  +++  L L+I
Sbjct: 667  NFRDRFANWPVRIEMISRFRSAKEQQQIVEMAAEGKVDIIIGTHKLLQSDLRWKDLGLLI 726

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +      D+S I+  PA R  +K
Sbjct: 727  VDEEHRFGVRHKEQIKAMRADVDILTLTATPIPRTLNMAMSSMRDLSIISTPPARRLAVK 786

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E  +++       R   L     + IA
Sbjct: 787  TFVREYDSL-LVREAILREVLRGGQVYYLYNDVENIEKAKL-----RLEELVPE--ARIA 838

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM  F +    +LI TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 839  IGHGQMRERDLERVMTDFHHQRFNVLICTTIIETGIDIPSANTIIIERADHFGLAQLHQL 898

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ +++ RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 899  RGRVGRSHHQAYAYLLTPHPKAMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELL 958

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG    +     L+  LLE A    K    + P L  +      + L +
Sbjct: 959  GEEQSGQMTTI--GFTLYMELLESAVDALKA--GRKPSLEDLTNSQTDVELRM 1007


>gi|296157812|ref|ZP_06840646.1| transcription-repair coupling factor [Burkholderia sp. Ch1-1]
 gi|295892058|gb|EFG71842.1| transcription-repair coupling factor [Burkholderia sp. Ch1-1]
          Length = 1160

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/479 (32%), Positives = 232/479 (48%), Gaps = 19/479 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +W    R+        A ++  L  R+  +      +    K   K   +  F 
Sbjct: 548  HSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAARSGHAFALEP--KDYVKFAESFGFE 605

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +
Sbjct: 606  ETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTL 665

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QH +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+
Sbjct: 666  LAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIHQINEGTVDIVIGTHKLLSSDVQF 725

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P
Sbjct: 726  KRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAP 785

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  IKT +        + E +   L  G + Y++  ++E  +     +  +   +L  
Sbjct: 786  QKRLAIKTFV-RREEDSVIREAMLRELKRGGQVYFLHNEVETIE-----NRRQMLETLVP 839

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IA+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FG
Sbjct: 840  E--ARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPTANTILIHRADKFG 897

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ 
Sbjct: 898  LAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEI 957

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE+LG KQSG    +  Q  L+  +L  A K  K    ++PDLTS    +  I L+
Sbjct: 958  RGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKE--GKEPDLTSPLAATTEINLH 1012


>gi|238795991|ref|ZP_04639503.1| Transcription-repair-coupling factor [Yersinia mollaretii ATCC 43969]
 gi|238720196|gb|EEQ12000.1| Transcription-repair-coupling factor [Yersinia mollaretii ATCC 43969]
          Length = 1148

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G    ++ +  Q   ++ PF  T  QE 
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAK--SGFKFKLDREQYQLFCQSFPFETTPDQEQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       + +E+++       ++  LE+ A G+  IIIGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFATWPVRIEMMSRFRSAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWQDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  + E +   +  G + Y++   +E     N     +R   L     + IA
Sbjct: 788  TFVREYDSL-VIREAILREILRGGQVYYLYNDVE-----NIEKATQRLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     L+  LLE A    K    ++P L  +      I + +
Sbjct: 960  GEDQSGQLTTIGFS--LYMELLENAVDALKE--GREPSLEDLTNNQTEIEMRM 1008


>gi|145633284|ref|ZP_01789015.1| transcription-repair coupling factor [Haemophilus influenzae 3655]
 gi|144986130|gb|EDJ92720.1| transcription-repair coupling factor [Haemophilus influenzae 3655]
          Length = 1146

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 162/480 (33%), Positives = 254/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 545  HKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAK--KGFAFKYDREEFQQFSATFPFE 602

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 603  ETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 662

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ L+ +A G+  I+IGTH L Q  +++
Sbjct: 663  LAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILKSLAEGKVDILIGTHKLIQSDVKF 722

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 723  NDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 782

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 783  ARRLSIKTFVRQNDDL-VVREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVP 836

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A+HFG
Sbjct: 837  E--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFG 894

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++   GF++A  DL+ 
Sbjct: 895  LAQLHQLRGRVGRSHHQAYTYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEI 954

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LL+ A K  K    ++P L  +  Q   I L +
Sbjct: 955  RGAGELLGNEQSGQIESIGFS--LYMELLDAAVKALKE--GREPSLEELTQQQADIELRV 1010


>gi|262189663|ref|ZP_06048040.1| transcription-repair coupling factor [Vibrio cholerae CT 5369-93]
 gi|262034453|gb|EEY52816.1| transcription-repair coupling factor [Vibrio cholerae CT 5369-93]
          Length = 699

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    R+       +A ++  +  +++ K   G   +++ +         PF  T  Q  
Sbjct: 99  WVKARRKAAEKVRDVAAELLDVYAKREIK--PGFKFHLDREQYATFKATFPFEETDDQAM 156

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 157 AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 216

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  I VE+++       +++ L+ +A G+  I++GTH L    I++  L L+I
Sbjct: 217 NFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 276

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 277 VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 336

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +    + E +   +  G + Y++  Q+E   +     V      L     + I 
Sbjct: 337 TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETIDK-----VAADLEKLVPE--ARIT 388

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 389 VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 448

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL  PP  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 449 RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 508

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G +QSG          L+  +LE A +  K    ++P L  +  +   + + L
Sbjct: 509 GEEQSGQI--QSVGFTLYMEMLEQAVEALKS--GKEPALDDLLREQTEVEMRL 557


>gi|294668965|ref|ZP_06734052.1| transcription-repair coupling factor [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309138|gb|EFE50381.1| transcription-repair coupling factor [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 1072

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 236/449 (52%), Gaps = 15/449 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 495 LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAISAVIKDLTQAKPMDRLVCG 554

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 555 DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFVDRFADFPVKVASLSRFNN 614

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 615 SKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 674

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 675 VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 733

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 734 RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 786

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 787 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 846

Query: 601 SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 847 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 904

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLY 686
            A +D K    + PDL +  G +  I L+
Sbjct: 905 QAVRDLKK--GRQPDLDAPLGITTEIKLH 931


>gi|120598668|ref|YP_963242.1| transcription-repair coupling factor [Shewanella sp. W3-18-1]
 gi|120558761|gb|ABM24688.1| transcription-repair coupling factor [Shewanella sp. W3-18-1]
          Length = 1162

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/476 (32%), Positives = 245/476 (51%), Gaps = 19/476 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  W     + +     +A ++  +  R+Q +        ++ +   +  +  PF  T  
Sbjct: 559  NETWAKAKNKAIEKIRDVAAELLDVYARRQARPGE--SCEIDEEEYAQFAQGFPFEETVD 616

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            QESAI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQ
Sbjct: 617  QESAIHAVLADMRSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQ 676

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            HYE  K    +  ++ E+++       + + L+++  G+  I+IGTH L Q   ++  L 
Sbjct: 677  HYENFKDRFADWPVVTEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLG 736

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R 
Sbjct: 737  LLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRL 796

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             +KT +   +    V E +   +  G + Y++   +E  +        +    L     +
Sbjct: 797  AVKTFVRESD-PATVREAILREILRGGQVYYLHNNVESIE-----KCAQGIIDLVPE--A 848

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGLAQL
Sbjct: 849  RVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQL 908

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR    +   L+   P  ++ ++  RL  +   ED   GF++A +DL+ R  G
Sbjct: 909  HQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDLEIRGAG 968

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            E+LG +QSG    +     L+  +LE A K  K    ++P L  +  Q   I L +
Sbjct: 969  ELLGDEQSGHISKIGFS--LYMEMLESAVKALKQ--GKEPSLAQMLNQQCEIELRI 1020


>gi|329120140|ref|ZP_08248810.1| transcription-repair coupling factor [Neisseria bacilliformis ATCC
            BAA-1200]
 gi|327463671|gb|EGF09989.1| transcription-repair coupling factor [Neisseria bacilliformis ATCC
            BAA-1200]
          Length = 1290

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 148/453 (32%), Positives = 236/453 (52%), Gaps = 17/453 (3%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  L  R+  ++      + +    +       +  T+ Q +AI  +++D++Q   M R
Sbjct: 713  ELLNLYARRAAQEGHKFQFDEDD--YRAFADGFGYEETEDQAAAIAAVIKDLTQARPMDR 770

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++
Sbjct: 771  LVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVAQLS 830

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                    R  L  +A G   I+IGTH L QD I +  L LVI+DE+HRFGV+Q+ +L +
Sbjct: 831  RFNSSKETRATLTGMADGTVDIVIGTHKLVQDDISFKNLGLVIIDEEHRFGVRQKEQLKK 890

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                  +L +TATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E + 
Sbjct: 891  LRANVDILTLTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVL 949

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              L  G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  
Sbjct: 950  RELKRGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRD 1002

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F      +L+ +T+IE GID+ +A+ III  A+ FG+AQLHQLRGRVGR    +   LL 
Sbjct: 1003 FLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGIAQLHQLRGRVGRSHHQAYAYLLT 1062

Query: 597  HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
               +SK++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+ 
Sbjct: 1063 PEYISKDAEKRLDAIAAADELGAGFSLAMQDLEIRGAGEILGEGQSG--EMVQVGFTLYT 1120

Query: 654  SLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             +L+ A +D K    + PDL +  G +  I L+
Sbjct: 1121 EMLKQAVRDLKK--GRQPDLDAPLGVTTEIKLH 1151


>gi|123442012|ref|YP_001005995.1| transcription-repair coupling factor [Yersinia enterocolitica subsp.
            enterocolitica 8081]
 gi|122088973|emb|CAL11784.1| transcription-repair coupling factor [Yersinia enterocolitica subsp.
            enterocolitica 8081]
          Length = 1148

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G     + +  Q   ++ PF  T  QE 
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAK--SGFKFKFDREQYQLFCQSFPFETTPDQEQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM +   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       + +E+++       ++  LE+ A G+  IIIGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFATWPVRIEMMSRFRSAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWQDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N     ++   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIEKATQKLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     L+  LLE A    K    ++P L  +      I + +
Sbjct: 960  GEDQSGQMTTIGFS--LYMELLESAVDALKE--GREPSLEDLTSNQTEIEMRM 1008


>gi|268686819|ref|ZP_06153681.1| transcription-repair coupling factor [Neisseria gonorrhoeae
            SK-93-1035]
 gi|268627103|gb|EEZ59503.1| transcription-repair coupling factor [Neisseria gonorrhoeae
            SK-93-1035]
          Length = 1241

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/449 (33%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 662  LNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 721

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 722  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 781

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +    
Sbjct: 782  SKATKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLRAN 841

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 842  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 900

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 901  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 953

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 954  RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1013

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1014 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLK 1071

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1072 QAVRDLKK--GRRPDLDAPLGITTEIKLH 1098


>gi|52841189|ref|YP_094988.1| transcription repair coupling factor [Legionella pneumophila subsp.
            pneumophila str. Philadelphia 1]
 gi|52628300|gb|AAU27041.1| transcription repair coupling factor [Legionella pneumophila subsp.
            pneumophila str. Philadelphia 1]
          Length = 1153

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 158/496 (31%), Positives = 244/496 (49%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     +  H P  K    +W    ++       +A ++  L  +++ +       N
Sbjct: 530  HMISRYTGVDSEHAPLHKLGSEQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFN 589

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
                   K     PF+ T  Q  AI+ I++DM     M R++ GDVG GKT VA+ A   
Sbjct: 590  --QSEYIKFASGFPFTETPDQLQAIEQIIKDMQSPRPMDRLICGDVGFGKTEVAMRAAFV 647

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AV+ G Q  I+AP  +LA QH+E  +    +  + +E+++           L  +  G+ 
Sbjct: 648  AVQNGKQVCILAPTTLLAGQHFESFRDRFADFPVNIELLSRFRSNKESEAVLAALQSGKV 707

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH LFQ++I +  L L+I+DE+HRFGV+Q+  +    T   +L MTATPIPRTL 
Sbjct: 708  DIVIGTHKLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLN 767

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  DIS I   PA R  IKT     N +  + E +   +  G + +++   ++  +
Sbjct: 768  MAMAGIRDISLIATPPAKRLAIKTFWQEKNDL-TIREAILREILRGGQVFYLHNNVQTIE 826

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                  V +   +L     + I   HG+M +   E +M  F +    +L+ TT+IE GID
Sbjct: 827  -----RVCQDLEALVPE--AKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGID 879

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ III+ A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RL  + + 
Sbjct: 880  IPTANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSL 939

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG +QSG    +     L   +L+ A  D K    + P
Sbjct: 940  EDLGAGFTLATHDLEIRGAGELLGEEQSGNMHAIGFN--LFMEMLDRAVNDLKA--GKTP 995

Query: 672  DLTSVRGQSIRILLYL 687
            +L++   Q   I L +
Sbjct: 996  ELSAPMHQGPEIDLRI 1011


>gi|227891598|ref|ZP_04009403.1| transcription-repair coupling factor [Lactobacillus salivarius ATCC
            11741]
 gi|227866745|gb|EEJ74166.1| transcription-repair coupling factor [Lactobacillus salivarius ATCC
            11741]
          Length = 1174

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 146/463 (31%), Positives = 249/463 (53%), Gaps = 20/463 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R      E +A ++  L  +++ +   G     +    ++     P++ T  Q 
Sbjct: 568  EWAKTKRRVANKIEDIADELVDLYAKREAE--KGYAFTPDDSYQKEFEDAFPYTETPDQL 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + K+I QDM +   M R+L GDVG GKT VAL A   AV+ G Q   +AP  +LAQQHY
Sbjct: 626  RSSKEIKQDMEKLKPMDRLLIGDVGYGKTEVALRAAFKAVQDGKQVAFLAPTTVLAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +++  +N  + + I++        ++ +E +  G+  I++GTH L    +++  L L+
Sbjct: 686  ETMEQRFENFPVEIGILSRFNTAKEIKETIENLETGKLDIVVGTHRLLSKDVKFADLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L +  T+  VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746  IIDEEQRFGVKHKERLKELKTSVDVLTLTATPIPRTLNMSMLGVRDLSVIETAPMNRYPI 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T +I  N    +++ +K  +  G + +++  ++++ ++           SL     + +
Sbjct: 806  QTYVIEKN-YGVIVDGIKREIERGGQVFYLHNRVDDIEKVAS-----ELESLVPE--AKV 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A IHGRM++   E+++  F +G   +L+ TT+IE G+D+ + + + ++NA+  GL+QL+Q
Sbjct: 858  AYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRMGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+    +Y P   L++ +  RL  +K+      GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSNRIAYAYFMYQPNKVLTEVAEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI-LTQDPDL 673
            LG +Q G    +     L+  +L   +A+K  K I +  D +L
Sbjct: 978  LGKQQHGFIDSVGYD--LYTQMLNDAVAKKRGKEIKVKTDAEL 1018


>gi|325130353|gb|EGC53119.1| transcription-repair coupling factor [Neisseria meningitidis
            OX99.30304]
          Length = 1292

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/453 (33%), Positives = 239/453 (52%), Gaps = 17/453 (3%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  L  R+  +   G    +     Q       +  T+ Q +AI  +++D++Q   M R
Sbjct: 713  ELLNLYARRAAQ--SGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDR 770

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++
Sbjct: 771  LVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLS 830

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                    + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +
Sbjct: 831  RFNNSKATKAALEGLADGTVDIVIGTHKLVQDDIRFKNLGLVIIDEEHRFGVRQKEQLKR 890

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                  +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E + 
Sbjct: 891  LRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVL 949

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              L  G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  
Sbjct: 950  RELKRGGQVFFLHNEVDTIE-----NMRERLKTLLPE--ARIGVAHGQLRERELEQVMRD 1002

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F      +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL 
Sbjct: 1003 FLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLT 1062

Query: 597  HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
               ++K++  RL+ +        GF +A +DL+ R  GEILG  QSG  + +     L+ 
Sbjct: 1063 PEYITKDAEKRLNAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYT 1120

Query: 654  SLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             +L+ A +D K    + PDL +  G +  I L+
Sbjct: 1121 EMLKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1151


>gi|332654772|ref|ZP_08420514.1| transcription-repair coupling factor [Ruminococcaceae bacterium D16]
 gi|332516115|gb|EGJ45723.1| transcription-repair coupling factor [Ruminococcaceae bacterium D16]
          Length = 1164

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 142/446 (31%), Positives = 231/446 (51%), Gaps = 16/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + LA  +  L  ++Q +   G   + +    ++      ++ T  Q 
Sbjct: 572  DWERAKTRAKKAVQDLAKGLIELYAQRQRQ--PGYAFSPDSPWQREFEEQFEYTETDDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I++I +DM     M R+L GDVG GKT VA  AM   V  G QA ++ P  +LA+QHY
Sbjct: 630  RCIQEIKKDMESPVPMDRLLCGDVGYGKTEVAFRAMMKCVLDGKQAAVLVPTTVLARQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  Q   + +++++        ++ L ++ +G   I+IGTH LF   +++  L L+
Sbjct: 690  LNALRRFQKYPVNIDVVSRFRTPTQMKETLRKVENGGVDILIGTHRLFNKDVKFKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGVQ + KL +      VL ++ATPIPRTL +   G  D+S + E PA R P+
Sbjct: 750  VVDEEQRFGVQHKEKLKETFRQVDVLTLSATPIPRTLNMAMSGIRDMSTLEEPPADRLPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V + ++  L  G + Y++  ++E    +  R       +      +++
Sbjct: 810  QTYVLEHN-WPVVADAMRRELERGGQVYYLHNRVETIDRTAARIQQMLGET------AAV 862

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS    + VM    +G   +L+ TT+IE GID+ +A+ +IIE+A+H GLAQLHQ
Sbjct: 863  GVAHGKMSQEAIDDVMSRMTDGELNVLVCTTIIETGIDLPNANTLIIEDADHLGLAQLHQ 922

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L Y     L++ +  RL+ ++       GF IA  DL+ R  G +
Sbjct: 923  LRGRVGRSNRRAYAYLTYRRGKVLTEVAAKRLAAIREFAEFGSGFKIAMRDLEIRGAGNV 982

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +QSG    L    +++  LLE A
Sbjct: 983  LGPEQSGFM--LSVGYDMYLKLLEEA 1006


>gi|152980432|ref|YP_001353098.1| transcription-repair coupling factor [Janthinobacterium sp.
            Marseille]
 gi|151280509|gb|ABR88919.1| transcription-repair coupling factor (superfamily II helicase)
            [Janthinobacterium sp. Marseille]
          Length = 1147

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 148/474 (31%), Positives = 227/474 (47%), Gaps = 19/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++             +    +  F  T  Q 
Sbjct: 553  QWEKAKRRAAEKIRDTAAELLNLYARRALREG--HSFEYSAHDYEAFAESFGFEETADQA 610

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  +++DM+    M R++ GDVG GKT VAL A   AV  G Q  I+AP  +LA+QH 
Sbjct: 611  AAINAVIKDMTSGKPMDRLICGDVGFGKTEVALRAAFVAVLGGKQVAILAPTTLLAEQHA 670

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++         +A++ +A G   I+IGTH L    I++ +L LV
Sbjct: 671  QTFADRFADWPVRIAELSRFRTAKEVTQAIKGMADGTIDIVIGTHKLLSGDIKFSRLGLV 730

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 731  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSIIATAPQKRLAI 790

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +   N    + E     L  G + Y++  ++E       ++       L     + I
Sbjct: 791  KTFVRSEND-SVIREACLRELKRGGQVYFLHNEVETI-----QNRKAMLEELMPE--ARI 842

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG++ + D E +M  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 843  GVAHGQLHERDLERIMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQ 902

Query: 579  LRGRVGRGEEISSCILLYHP-----PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H       L++     +  ++    GF +A  DL+ R  GE+
Sbjct: 903  LRGRVGRSHHQAYAYLLVHDVQGLSKLAQRRLDAIQQMEELGSGFYLAMHDLEIRGAGEV 962

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            LG  QSG    +  Q  L+  +L  A +  K+   ++PDL +    +  I L++
Sbjct: 963  LGDNQSGEMSEIGFQ--LYSDMLNEAVRSLKN--GKEPDLAAPLASTTEINLHV 1012


>gi|328463460|gb|EGF35111.1| transcription-repair coupling factor [Lactobacillus helveticus MTCC
           5463]
          Length = 1055

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 142/450 (31%), Positives = 239/450 (53%), Gaps = 19/450 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +   G   + +  + ++     P++ T  Q 
Sbjct: 563 EWAKIKRKVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQKQFEDAFPYAETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R++ GDVG GKT VAL A   A++   Q   +AP  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAIQDNKQVAFLAPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++     A  ++ +E +  G+  +++GTH L    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLKEGKIDLVVGTHRLLSKDVEFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +T ++   +I  V+ +     +    + +++  +I +  E      VE+   L  +  + 
Sbjct: 801 QTYVME--QIPSVVRDACLREMQRDGQVFYLHNRISDIDE-----TVEKLQQLIPN--AR 851

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+
Sbjct: 852 IASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDIPNVNTMIIEDADHYGLSQLY 911

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G 
Sbjct: 912 QLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAGN 971

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +LG +Q G    +     L+  +L  A K+
Sbjct: 972 MLGAQQHGFIDSVGYD--LYSQMLSDAIKE 999


>gi|315037511|ref|YP_004031079.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL
           1112]
 gi|312275644|gb|ADQ58284.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL
           1112]
          Length = 1164

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 146/450 (32%), Positives = 237/450 (52%), Gaps = 19/450 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +   G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQRQFDDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++     A  ++ +E +  G+  I++GTH L    + +  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLEDGKIDIVVGTHRLLSKDVHFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +T ++   +I  VI +     +  G + +++  +I +  E      VE+   L  +  + 
Sbjct: 801 QTYVME--QIPSVIKDACLREMKRGGQVFYLHNRISDIDE-----TVEKLQQLIPN--AR 851

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+
Sbjct: 852 IASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLY 911

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G 
Sbjct: 912 QLRGRIGRSARLAYAYFLYRPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAGN 971

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +LG +Q G    +     L+  +L  A K+
Sbjct: 972 MLGAQQHGFIDSVGYD--LYSQMLSDAIKE 999


>gi|56961865|ref|YP_173587.1| transcription-repair coupling factor [Bacillus clausii KSM-K16]
 gi|56908099|dbj|BAD62626.1| transcription-repair coupling factor [Bacillus clausii KSM-K16]
          Length = 1180

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 143/468 (30%), Positives = 245/468 (52%), Gaps = 17/468 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++     E +A  +  L   ++    +G   + +G    +   + P+  T+ Q 
Sbjct: 573  DWKKVKKKVQTSVEDIADDLIKLYAEREA--SVGHRFSSDGPEQAEFESSFPYQETEDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AIK+I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  I+ P  ILAQQH+
Sbjct: 631  RAIKEIKEDMEKQRPMDRLLCGDVGYGKTEVAIRAAFKAIMDGKQVAILVPTTILAQQHF 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I     +  I V +++    +  + + L+ +  G   +++GTH L    +Q+  L L+
Sbjct: 691  ETISDRFSDFPITVGVLSRFRSRKEQTEVLKGLKAGSVDLVVGTHRLLSKDVQFRDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ +      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 751  IVDEEQRFGVTHKEKIKRMKANIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  LS G + Y +  ++E+ +      + E+ ++L     + +
Sbjct: 811  QTYVVEFN-PAIVREAIERELSRGGQVYVLYNRVEDIE-----RMTEQISTLVPD--ARV 862

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            +  HG+M++ + ES++  F  G   +L+ TT+IE G+D+ + + +I+ NA+  GL+QL+Q
Sbjct: 863  SYAHGQMNERELESIILDFLEGESDVLVTTTIIETGVDIPNVNTLIVCNADKMGLSQLYQ 922

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            +RGRVGR   ++     Y P   L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 923  IRGRVGRSNRVAYSYFTYQPDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNL 982

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
            LG +Q G    +     L+  +L+ A ++ K    ++P   +    +I
Sbjct: 983  LGSQQHGFIDSVGFD--LYSQMLKEAIEERKGEKPKEPPFKAELNVNI 1028


>gi|260102336|ref|ZP_05752573.1| transcription-repair coupling factor [Lactobacillus helveticus DSM
           20075]
 gi|260083845|gb|EEW67965.1| transcription-repair coupling factor [Lactobacillus helveticus DSM
           20075]
          Length = 1165

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 142/450 (31%), Positives = 239/450 (53%), Gaps = 19/450 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +   G   + +  + ++     P++ T  Q 
Sbjct: 563 EWAKIKRKVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQKQFEDAFPYAETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R++ GDVG GKT VAL A   A++   Q   +AP  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAIQDNKQVAFLAPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++     A  ++ +E +  G+  +++GTH L    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLKEGKIDLVVGTHRLLSKDVEFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +T ++   +I  V+ +     +    + +++  +I +  E      VE+   L  +  + 
Sbjct: 801 QTYVME--QIPSVVRDACLREMQRDGQVFYLHNRISDIDE-----TVEKLQQLIPN--AR 851

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+
Sbjct: 852 IASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDIPNVNTMIIEDADHYGLSQLY 911

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G 
Sbjct: 912 QLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAGN 971

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +LG +Q G    +     L+  +L  A K+
Sbjct: 972 MLGAQQHGFIDSVGYD--LYSQMLSDAIKE 999


>gi|86146945|ref|ZP_01065263.1| transcription-repair coupling factor [Vibrio sp. MED222]
 gi|85835195|gb|EAQ53335.1| transcription-repair coupling factor [Vibrio sp. MED222]
          Length = 1153

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 147/473 (31%), Positives = 237/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    +        +A ++  +  +++ K   G    ++           PF  T  Q  
Sbjct: 553  WQKARKRAAEKVRDVAAELLDVYAKRELK--PGYKFVLDRGQYATFKSGFPFEETDDQAM 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  ++ DM Q   M R++ GDVG GKT VA+ A     +   Q  ++ P  +LAQQH+E
Sbjct: 611  AINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVCTDNSKQVAVLVPTTLLAQQHFE 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE+++       ++  ++ +A G+  I++GTH L    I++  L L++
Sbjct: 671  NFRDRFANLPIRVEVLSRFKSAKEQKLIMQDVADGKVDILVGTHKLLSSDIKFKDLGLLV 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 731  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    V E +   +  G + Y++  Q++  +        E    L     + + 
Sbjct: 791  TFVRESDD-AIVREAVLREIMRGGQVYFLHNQVDTIE-----KTAESLQKLIPE--ARVT 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E +M+ F +    LL+ TT+IE GIDV  A+ I+++ A++ GLAQLHQL
Sbjct: 843  VAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTILMDRADNLGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L+  +LE A +  K    ++P L  +  +   I + L
Sbjct: 963  GDEQSGQI--QSVGFTLYMEMLEQAVEALKE--GREPSLDDLLSEQTEIEMRL 1011


>gi|240950267|ref|ZP_04754546.1| transcription-repair coupling factor [Actinobacillus minor NM305]
 gi|240295244|gb|EER46045.1| transcription-repair coupling factor [Actinobacillus minor NM305]
          Length = 1150

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/481 (33%), Positives = 253/481 (52%), Gaps = 21/481 (4%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    ++       +A ++  +  +++ +   G     +     +     PF 
Sbjct: 549  HKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQ--KGFAFEYDRDAFVQFSNTFPFE 606

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AV    Q  I+AP  +
Sbjct: 607  ETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVMNHKQVAILAPTTL 666

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+E  K    N  I VE+++       +++ L ++A G+  I++GTH L Q+ +Q+
Sbjct: 667  LAQQHFENFKDRFANYPINVEVLSRFKTAKEQKEILAKVADGKVDILVGTHKLLQEDVQF 726

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+++DE+HRFGV+Q+ ++ Q      +L +TATPIPRTL +   G  D+S I   P
Sbjct: 727  KDLGLLVIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMALNGMRDLSIIASPP 786

Query: 453  AGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            A R  IKT +   +  D VI E +   +  G + Y++   +   +     +  ++   L 
Sbjct: 787  ARRLSIKTFVRQSD--DTVIKEAILREILRGGQVYYLHNDVATIE-----NTAQQLAELV 839

Query: 512  EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ IIIE A+ F
Sbjct: 840  PE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKF 897

Query: 572  GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GLAQLHQLRGRVGR    +   +L  PP  L+K++  RL  + + ++   GF++A  DL+
Sbjct: 898  GLAQLHQLRGRVGRSHHQAYAYMLTPPPKTLTKDAQQRLEAMSSIDNLGAGFVLATHDLE 957

Query: 627  QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             R  GE+LG +QSG  + L     L+  LLE A K  +    ++P L  +  Q + I L 
Sbjct: 958  IRGAGELLGSEQSGQIESLGFS--LYMELLENAVKALQE--GREPTLDEITQQQVDIELR 1013

Query: 687  L 687
            +
Sbjct: 1014 V 1014


>gi|327182807|gb|AEA31254.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL
           1118]
          Length = 1164

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 146/450 (32%), Positives = 237/450 (52%), Gaps = 19/450 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +   G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQRQFDDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++     A  ++ +E +  G+  I++GTH L    + +  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLEDGKIDIVVGTHRLLSKDVHFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +T ++   +I  VI +     +  G + +++  +I +  E      VE+   L  +  + 
Sbjct: 801 QTYVME--QIPSVIKDACLREMKRGGQVFYLHNRISDIDE-----TVEKLQQLIPN--AR 851

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+
Sbjct: 852 IASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLY 911

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G 
Sbjct: 912 QLRGRIGRSARLAYAYFLYRPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAGN 971

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +LG +Q G    +     L+  +L  A K+
Sbjct: 972 MLGAQQHGFIDSVGYD--LYSQMLSDAIKE 999


>gi|240128422|ref|ZP_04741083.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            SK-93-1035]
          Length = 1234

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/449 (33%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 655  LNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 714

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 715  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 774

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +    
Sbjct: 775  SKATKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLRAN 834

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 835  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 893

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 894  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 946

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 947  RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1006

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1007 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLK 1064

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1065 QAVRDLKK--GRRPDLDAPLGITTEIKLH 1091


>gi|315180610|gb|ADT87524.1| transcription-repair coupling factor [Vibrio furnissii NCTC 11218]
          Length = 1125

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 153/473 (32%), Positives = 240/473 (50%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    R+       +A ++  +  +++ K   G    ++           PF  T  Q  
Sbjct: 525 WVKARRKAAEKVRDVAAELLDVYAKRELK--PGYKFQLDRDQYATFKSGFPFEETDDQAM 582

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  ++ DM Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E
Sbjct: 583 AINAVMSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 642

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  I VE+++       ++  L+ +A G+  I++GTH L    I++  L L++
Sbjct: 643 NFRDRFANLPIRVEVLSRFKSAKEQKAILQDVADGKVDIVVGTHKLLSSDIKFADLGLLV 702

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 703 VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRMAIK 762

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +    + E +   +  G + Y++  Q+E         V      L     + I 
Sbjct: 763 TFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVESID-----KVAADLEKLIPE--ARIT 814

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+ II++ A+  GLAQLHQL
Sbjct: 815 VAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 874

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 875 RGRVGRSHHQAYAYLLTPHPKAMTKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 934

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G +QSG  + +     L+  +LE A +  K    ++P L  +  +   + L +
Sbjct: 935 GDEQSGQIQSI--GFTLYMEMLEQAVEALKS--GKEPSLDDLLREQTEVELRI 983


>gi|311695148|gb|ADP98021.1| transcription-repair-coupling factor [marine bacterium HP15]
          Length = 1177

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 162/487 (33%), Positives = 248/487 (50%), Gaps = 18/487 (3%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     +  H P  K     W++  ++ L      A ++  +  R++ +   G    
Sbjct: 552  HLISRYAGNDTEHAPLHKLGTDRWSTAKQKALEKIRDTAAELLDVYARREAR--KGFSFE 609

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
               +  +      PF  T  Q+ AI+ + +DM+ +  M R++ GDVG GKT VA+ A   
Sbjct: 610  DPKEAYRAFAAGFPFEETPDQQVAIQSVFEDMTSEQPMDRLVCGDVGFGKTEVAMRAAFL 669

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A  +G Q  ++ P  +LAQQHYE  +    +T + VE+++         KALE + +G+A
Sbjct: 670  ATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTPVQVELLSRFRTAGQTSKALEAVENGRA 729

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L Q  I++  L LVI+DE+HRFGVQQ+ +L        +L +TATPIPRTL 
Sbjct: 730  DIVIGTHKLLQGDIKFKNLGLVIIDEEHRFGVQQKERLKALRAEVDMLNLTATPIPRTLN 789

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +      D+S I   PA R  +KT +   +    V E +   +  G + Y++   +   +
Sbjct: 790  MAMGHLRDLSIIATPPARRLSVKTFVRQKDN-AMVKEAILREILRGGQVYFLHNDVATIE 848

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                    E   SL     + + + HG+M + D E +M  F +    +L+ TT+IE GID
Sbjct: 849  -----KTAEDLRSLIPE--ARVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTTIIETGID 901

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            V  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL  PP  ++ ++  RL  +   
Sbjct: 902  VPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLDAISEA 961

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            +D   GF++A  DL+ R  GE+LG +QSG  + +     L+  LL+ A K  +   T + 
Sbjct: 962  QDLGAGFMLATHDLEIRGAGELLGEEQSGQIESI--GFTLYMQLLDEAVKAIREGRTPNA 1019

Query: 672  DLTSVRG 678
            DL    G
Sbjct: 1020 DLPLSHG 1026


>gi|170023947|ref|YP_001720452.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
            YPIII]
 gi|169750481|gb|ACA67999.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
            YPIII]
          Length = 1148

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G     + +  Q   ++ PF  T  QE 
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAVK--SGFKFKHDREQYQLFCQSFPFETTPDQEQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       + +E+++       ++  LE+ A G+  I+IGTH L Q  + ++ L L+I
Sbjct: 668  NFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGTHKLLQSDLHWHDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  + E +   +  G + Y++   +E     N   V ++   L     + IA
Sbjct: 788  TFVREYDSL-VIREAILREILRGGQVYYLYNDVE-----NIEKVTQKLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+H GLAQLHQL
Sbjct: 840  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHLGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  +S ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     L+  LLE A    K    ++P L  +      I + +
Sbjct: 960  GEDQSGQMTTIGFS--LYMELLESAVDALKE--GREPSLEDLTSNQTEIEMRM 1008


>gi|54293927|ref|YP_126342.1| transcription-repair coupling factor [Legionella pneumophila str.
            Lens]
 gi|53753759|emb|CAH15217.1| Transcription-repair coupling factor [Legionella pneumophila str.
            Lens]
          Length = 1153

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/496 (31%), Positives = 243/496 (48%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     +  H P  K    +W    ++       +A ++  L  +++ +       N
Sbjct: 530  HMISRYTGVDSEHAPLHKLGSDQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFN 589

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
                   K     PF+ T  Q  AI+ I++DM     M R++ GDVG GKT VA+ A   
Sbjct: 590  --QSEYIKFASGFPFTETPDQLQAIEQIIKDMQSPRPMDRLICGDVGFGKTEVAMRAAFV 647

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AV+ G Q  I+AP  +LA QH+E  +       + +E+++           L  +  G+ 
Sbjct: 648  AVQNGKQVCILAPTTLLAGQHFESFRDRFAEFPVNIELLSRFRSNKESEAVLAALQSGKV 707

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH LFQ++I +  L L+I+DE+HRFGV+Q+  +    T   +L MTATPIPRTL 
Sbjct: 708  DIVIGTHKLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLN 767

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  DIS I   PA R  IKT     N +  + E +   +  G + +++   ++  +
Sbjct: 768  MAMAGIRDISLIATPPAKRLAIKTFWQEKNDL-TIREAILREILRGGQVFYLHNNVQTIE 826

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                  V +   +L     + I   HG+M +   E +M  F +    +L+ TT+IE GID
Sbjct: 827  -----RVCQDLEALVPE--AKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGID 879

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ III+ A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RL  + + 
Sbjct: 880  IPTANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSL 939

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG +QSG    +     L   +L+ A  D K    + P
Sbjct: 940  EDLGAGFTLATHDLEIRGAGELLGEEQSGNMHAIGFN--LFMEMLDRAVNDLKA--GKTP 995

Query: 672  DLTSVRGQSIRILLYL 687
            +L++   Q   I L +
Sbjct: 996  ELSAPMHQGPEIDLRI 1011


>gi|238922870|ref|YP_002936383.1| transcription-repair coupling factor [Eubacterium rectale ATCC 33656]
 gi|238874542|gb|ACR74249.1| transcription-repair coupling factor [Eubacterium rectale ATCC 33656]
          Length = 1177

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 172/642 (26%), Positives = 292/642 (45%), Gaps = 80/642 (12%)

Query: 79   HSSFQLQKRRPYKILL------------NDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
                +  K+  Y+++L             D T +    F+    +      FEG+ +   
Sbjct: 400  IKDLKRYKKNGYRVILLSGSRTRAKRLSEDITDQGITCFYTENYDH---ELFEGQIMVCY 456

Query: 127  GKIKKLKNRIIM-----------------------------------VHPHYIFHNSQDV 151
            GK+++     I+                                       Y+ H +   
Sbjct: 457  GKVRRGFEYPILKFAVITESDIFGAQQKKKKRHRTYEGEKIQSFTDLSVGDYVVHENH-- 514

Query: 152  NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
               +   +  L     V  + KI  +  S L +L   +  D++QK        A      
Sbjct: 515  GLGIYRGIEKLEVDKKVKDYIKIEYQGGSNLYILATQL--DMIQKY-------AGKDARK 565

Query: 212  PRKAK--DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
            P+  K    EWT          + +AG +  L    Q +++ G     +    ++     
Sbjct: 566  PKLNKLGGQEWTRTKNRVRGAVKQIAGDLVKLYA--QREQQNGYAFGEDTVWQREFEELF 623

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF  T+ Q  AI+    DM     M R++ GDVG GKT VA+ A   AV+   Q   +AP
Sbjct: 624  PFDETEDQILAIEATKTDMQSHKIMDRLICGDVGYGKTEVAIRAAFKAVQDSKQVAYLAP 683

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              ILAQQ Y+   +  ++  + V+++      A ++K +E++  G+  IIIGTH +    
Sbjct: 684  TTILAQQIYDTFSQRMKDFPVNVDLMCRFRSAAEQKKTIEKLKKGEVDIIIGTHRILSKD 743

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            +Q+  L L+++DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S + 
Sbjct: 744  VQFKDLGLLVIDEEQRFGVTHKEKIKQMKVNVDVLTLTATPIPRTLHMSLIGIRDMSVLE 803

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
            E P  R PI+T ++  N  + V E +   L+   + Y++  ++ +  +   +        
Sbjct: 804  EPPMDRVPIQTYVMEYND-ELVREAINRELARNGQVYYVYNKVRDIADITAK-----LQE 857

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            L     +++A  HG+M + + E +M  F NG   +L++TT+IE G+D+ + + +II +A+
Sbjct: 858  LVPD--ATVAFAHGQMKETELERIMYRFINGEIDVLVSTTIIETGLDISNVNTMIIHDAD 915

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEED 624
            + GL+QL+QLRGRVGR    +   L+Y  +  L + +  RL+ +K   D   GF IA  D
Sbjct: 916  NMGLSQLYQLRGRVGRSNRTAYAFLMYRRNKMLKEVAEKRLAAIKEYSDLGSGFKIAMRD 975

Query: 625  LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            L+ R  G +LG +QSG  + +     L+  +L  A K+AK I
Sbjct: 976  LEIRGAGNLLGAEQSGHMEAVGYD--LYCKMLSEAVKEAKGI 1015


>gi|51596765|ref|YP_070956.1| transcription-repair coupling factor [Yersinia pseudotuberculosis IP
            32953]
 gi|186895833|ref|YP_001872945.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
            PB1/+]
 gi|51590047|emb|CAH21681.1| transcription-repair coupling factor [Yersinia pseudotuberculosis IP
            32953]
 gi|186698859|gb|ACC89488.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
            PB1/+]
          Length = 1148

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G     + +  Q   ++ PF  T  QE 
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAVK--SGFKFKHDREQYQLFCQSFPFETTPDQEQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       + +E+++       ++  LE+ A G+  I+IGTH L Q  + ++ L L+I
Sbjct: 668  NFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGTHKLLQSDLHWHDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  + E +   +  G + Y++   +E     N   V ++   L     + IA
Sbjct: 788  TFVREYDSL-VIREAILREILRGGQVYYLYNDVE-----NIEKVTQKLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+H GLAQLHQL
Sbjct: 840  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHLGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  +S ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     L+  LLE A    K    ++P L  +      I + +
Sbjct: 960  GEDQSGQMTTIGFS--LYMELLESAVDALKE--GREPSLEDLTSNQTEIEMRM 1008


>gi|153948693|ref|YP_001400575.1| transcription-repair coupling factor [Yersinia pseudotuberculosis IP
            31758]
 gi|152960188|gb|ABS47649.1| transcription-repair coupling factor [Yersinia pseudotuberculosis IP
            31758]
          Length = 1148

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G     + +  Q   ++ PF  T  QE 
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAVK--SGFKFKHDREQYQLFCQSFPFETTPDQEQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       + +E+++       ++  LE+ A G+  I+IGTH L Q  + ++ L L+I
Sbjct: 668  NFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGTHKLLQSDLHWHDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  + E +   +  G + Y++   +E     N   V ++   L     + IA
Sbjct: 788  TFVREYDSL-VIREAILREILRGGQVYYLYNDVE-----NIEKVTQKLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+H GLAQLHQL
Sbjct: 840  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHLGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  +S ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     L+  LLE A    K    ++P L  +      I + +
Sbjct: 960  GEDQSGQMTTIGFS--LYMELLESAVDALKE--GREPSLEDLTSNQTEIEMRM 1008


>gi|296131721|ref|YP_003638968.1| transcription-repair coupling factor [Thermincola sp. JR]
 gi|296030299|gb|ADG81067.1| transcription-repair coupling factor [Thermincola potens JR]
          Length = 1178

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/458 (30%), Positives = 232/458 (50%), Gaps = 19/458 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    +        +A ++  L   ++  K +G     +    ++     P+  T  Q 
Sbjct: 580  DWNKVKKRVKESVREMAQELLNLYATRE--KVVGHAYPPDTVWQKEFEEAFPYEETPDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AIK+I +DM +   M R+L GDVG GKT VA+ A   AV    Q  ++ P  ILAQQHY
Sbjct: 638  RAIKEIKEDMERPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDSRQVAVLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      I +E+++       +++ L+ +  G   I+IGTH L Q+ +Q+ KL LV
Sbjct: 698  NTFVERFSGYPIKIEMLSRFRSPKEQQEILKNLKTGGVDIVIGTHRLVQNDVQFKKLGLV 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + +L Q      VL +TATPIPRTL ++ +G  D+S +   P  R P+
Sbjct: 758  IVDEEQRFGVAHKERLKQLRKNVDVLTLTATPIPRTLHMSLVGVRDMSILETPPEDRWPV 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T ++  N  D + + ++  +  G + Y++  +I +          +    L      + 
Sbjct: 818  QTYVLEFN-WDVIGDAVRKEMDRGGQVYFVHNRIMDID--------QIAAQLRAAVPEAR 868

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A+ HG+M +   E VM  F  G   +L+ TT+IE G+D+ + + +I++ A+  GL+QL+
Sbjct: 869  VAVAHGQMKEDQLEQVMLEFLEGEYDVLLCTTIIETGLDIPNVNTLIVDEADRMGLSQLY 928

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++     Y     L++ +  RL  ++       GF IA  DL+ R  G 
Sbjct: 929  QLRGRVGRSHRLAYAYFTYRRDKVLTEVAEKRLQAIREFTEFGSGFKIAMRDLEIRGAGN 988

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
             LG +Q G    +    +++  LLE A K+ K  L ++
Sbjct: 989  FLGPEQHGHM--MAVGFDMYCRLLEEAVKELKGDLIEE 1024


>gi|78485512|ref|YP_391437.1| transcription-repair coupling factor [Thiomicrospira crunogena XCL-2]
 gi|78363798|gb|ABB41763.1| transcription-repair coupling factor [Thiomicrospira crunogena XCL-2]
          Length = 1159

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 149/494 (30%), Positives = 243/494 (49%), Gaps = 20/494 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     +    P  K    +W    R+       +A ++  +  +++ +   G    
Sbjct: 540  HLISRYTGASAETAPLHKLGSDKWDKAKRKAAEKVRDVAAELLDIYAQREAR--PGYAFQ 597

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             + +   +     PF  T  QE+AI+ +L DM     M R++ GDVG GKT VA+ A   
Sbjct: 598  TDEEAYARFRAGFPFEETPDQEAAIEAVLSDMKSDKPMDRLICGDVGFGKTEVAMRAAFV 657

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A  +G Q  ++ P  +L+QQH E  K    +  I +E ++        ++ +E + + Q 
Sbjct: 658  AAYSGKQVAVLVPTTLLSQQHLENFKNRFADWPIRIEGLSRFQSAKETKQIVEAVKNNQV 717

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             IIIGTH + Q+ +Q+  L L+I+DE+HRFGV+Q+ +L +  T   V+ MTATPIPRTL 
Sbjct: 718  DIIIGTHKIIQNDMQFGNLGLIIIDEEHRFGVRQKEQLKKLRTEVDVMTMTATPIPRTLN 777

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +      D+S I   PA R  ++T +   N  D V E     +  G + Y +   +++ +
Sbjct: 778  MAMNDLRDLSIIATAPAKRLAVQTFVQDWN-PDVVKEACLREIRRGGQIYLLFNNVDKIE 836

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                  + E   +L     + +   HG+M + + E VM +F +    +L+ TT+IE GID
Sbjct: 837  -----QMAEEIQALLPE--AKVETAHGQMHERELEQVMQNFYHRRFNILVCTTIIETGID 889

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ I+I  A+ FGLAQLHQLRGRVGR    +   L       ++K++  RL+ +   
Sbjct: 890  IPTANTILIHRADKFGLAQLHQLRGRVGRSHHKAYAYLFTAGKALMTKDAEKRLTAIAKH 949

Query: 615  E---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            +    GF++A  DL+ R  GE+LG  QSG    +     L+  LL+ A +  K    + P
Sbjct: 950  DTLGAGFMLASHDLEIRGAGELLGDGQSGQIHEIGFG--LYSDLLDRAVRALKS--GKQP 1005

Query: 672  DLTSVRGQSIRILL 685
            +L +       + L
Sbjct: 1006 ELDAKLHTGAEVEL 1019


>gi|270490329|ref|ZP_06207403.1| transcription-repair coupling factor [Yersinia pestis KIM D27]
 gi|270338833|gb|EFA49610.1| transcription-repair coupling factor [Yersinia pestis KIM D27]
          Length = 901

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   ++       +A ++  +  ++  K   G     + +  Q   ++ PF  T  QE 
Sbjct: 303 WSRARQKAAEKVRDVAAELLDIYAQRAVK--SGFKFKHDREQYQLFCQSFPFETTPDQEQ 360

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 361 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNKQVAVLVPTTLLAQQHFD 420

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +       + +E+++       ++  LE+ A G+  I+IGTH L Q  + ++ L L+I
Sbjct: 421 NFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGTHKLLQSDLHWHDLGLLI 480

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 481 VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 540

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  + E +   +  G + Y++   +E     N   V ++   L     + I 
Sbjct: 541 TFVREYDSL-VIREAILREILRGGQVYYLYNDVE-----NIEKVTQKLAELVPE--ARIT 592

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+H GLAQLHQL
Sbjct: 593 IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHLGLAQLHQL 652

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL   P  +S ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 653 RGRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELL 712

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G  QSG    +     L+  LLE A    K    ++P L  +      I + +
Sbjct: 713 GEDQSGQMTTIGFS--LYMELLESAVDALKE--GREPSLEDLTSNQTEIEMRM 761


>gi|226939558|ref|YP_002794631.1| Mfd [Laribacter hongkongensis HLHK9]
 gi|226714484|gb|ACO73622.1| Mfd [Laribacter hongkongensis HLHK9]
          Length = 1131

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 148/471 (31%), Positives = 240/471 (50%), Gaps = 17/471 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    +         A ++  L  R+  ++       +     +       F  T  Q+
Sbjct: 539 QWERAKQRAAQKARDTAAELLNLYARRAAREG--HAFELSAHDYEAFAAGFGFEETPDQQ 596

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI+ ++ DM+    M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QHY
Sbjct: 597 AAIEAVIHDMTAGRPMDRLVCGDVGFGKTEVALRAAFVAAMGGKQVAVLVPTTLLAEQHY 656

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +       +  + +  ++       ++ AL  +A G   I+IGTH L Q  +++ +L LV
Sbjct: 657 QNFADRFADWPLKIVELSRFRSAKEQKAALAGLADGSVDIVIGTHRLVQPDVEFARLGLV 716

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+Q+ +L +      VL +TATPIPRTL ++  G  D S I   P  R  +
Sbjct: 717 IIDEEHRFGVRQKEQLKRLRANVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPNRRLSV 776

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           KT + P N    + E +   L  G + +++  ++E  +     ++ E+   L     + +
Sbjct: 777 KTFVTPQNN-GVIREAVLRELKRGGQVFFLYNEVETIE-----NMREKLTELLPE--ARV 828

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+M + + E VM  F      +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQ
Sbjct: 829 QVAHGQMRERELEQVMRDFNQQRFNVLLCSTIIETGIDIPNANTIIIHRADRFGLAQLHQ 888

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILG 635
           LRGRVGR    +   LL    ++K++  RL  ++  ED   GF +A  DL+ R  GE+LG
Sbjct: 889 LRGRVGRSHHQAYAYLLTGEGMTKDAMKRLEAIQMMEDLGSGFYLAMHDLEIRGAGEVLG 948

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             QSG    +     L+  +L+ A +  K    Q+PDL +  G +  + L+
Sbjct: 949 EGQSGEMHEIGFS--LYTEMLKSAVRALKK--GQEPDLDAPLGVTTEVNLH 995


>gi|307609748|emb|CBW99260.1| transcription-repair coupling factor [Legionella pneumophila 130b]
          Length = 1153

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/496 (31%), Positives = 243/496 (48%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     +  H P  K    +W    ++       +A ++  L  +++ +       N
Sbjct: 530  HMISRYTGVDSEHAPLHKLGSDQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFN 589

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
                   K     PF+ T  Q  AI+ I++DM     M R++ GDVG GKT VA+ A   
Sbjct: 590  --QSEYIKFASGFPFTETPDQLQAIEQIIKDMQSPRPMDRLICGDVGFGKTEVAMRAAFV 647

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AV+ G Q  I+AP  +LA QH+E  +       + +E+++           L  +  G+ 
Sbjct: 648  AVQNGKQVCILAPTTLLAGQHFESFRDRFAEFPVNIELLSRFRSNKESEAVLAALQSGKV 707

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH LFQ++I +  L L+I+DE+HRFGV+Q+  +    T   +L MTATPIPRTL 
Sbjct: 708  DIVIGTHKLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLN 767

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  DIS I   PA R  IKT     N +  + E +   +  G + +++   ++  +
Sbjct: 768  MAMAGIRDISLIATPPAKRLAIKTFWQEKNDL-TIREAILREILRGGQVFYLHNNVQTIE 826

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                  V +   +L     + I   HG+M +   E +M  F +    +L+ TT+IE GID
Sbjct: 827  -----RVCQDLEALVPE--AKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGID 879

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ III+ A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RL  + + 
Sbjct: 880  IPTANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSL 939

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG +QSG    +     L   +L+ A  D K    + P
Sbjct: 940  EDLGAGFTLATHDLEIRGAGELLGEEQSGNMHAIGFN--LFMEMLDRAVNDLKA--GKTP 995

Query: 672  DLTSVRGQSIRILLYL 687
            +L++   Q   I L +
Sbjct: 996  ELSAPMHQGPEIDLRI 1011


>gi|257464856|ref|ZP_05629227.1| transcription-repair coupling factor [Actinobacillus minor 202]
 gi|257450516|gb|EEV24559.1| transcription-repair coupling factor [Actinobacillus minor 202]
          Length = 1151

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/474 (33%), Positives = 252/474 (53%), Gaps = 21/474 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++       +A ++  +  +++ +   G     +     +     PF  T+ Q++
Sbjct: 556  WAKTRQKAAEKIRDVAAELLDVYAKREAQ--KGFAFEYDRDAFVQFSNTFPFEETEDQKT 613

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  ++ DM     M R++ GDVG GKT VA+ A   AV    Q  I+AP  +LAQQH+E
Sbjct: 614  AINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVMNHKQVAILAPTTLLAQQHFE 673

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    N  I VE+++       +++ L ++A G+  I++GTH L Q+ +Q+  L L++
Sbjct: 674  NFKDRFANYPINVEVLSRFKTAKEQKEILAKVADGKVDILVGTHKLLQEDVQFKDLGLLV 733

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ ++ Q      +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 734  IDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMALNGMRDLSIIASPPARRLSIK 793

Query: 460  TVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            T +   +  D VI E +   +  G + Y++   +   +     +  ++   L     + I
Sbjct: 794  TFVRQSD--DTVIKEAILREILRGGQVYYLHNDVATIE-----NTAQQLAELVPE--ARI 844

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ IIIE A+ FGLAQLHQ
Sbjct: 845  VIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFGLAQLHQ 904

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   +L  PP  L+K++  RL  + + ++   GF++A  DL+ R  GE+
Sbjct: 905  LRGRVGRSHHQAYAYMLTPPPKMLTKDAQQRLEAMSSIDNLGAGFVLATHDLEIRGAGEL 964

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            LG +QSG  + L     L+  LLE A K  +    ++P L  +  Q + I L +
Sbjct: 965  LGSEQSGQIESLGFS--LYMELLENAVKALQE--GREPTLDEITQQQVDIELRV 1014


>gi|318606131|emb|CBY27629.1| transcription-repair coupling factor [Yersinia enterocolitica subsp.
            palearctica Y11]
          Length = 1148

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G     + +  Q   ++ PF  T  QE 
Sbjct: 550  WSRARQKVAEKVRDVAAELLDIYAQRTAK--SGFKFKFDREQYQLFCQSFPFETTPDQEQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM +   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       + +E+++       ++  LE+ A G+  IIIGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFATWPVRIEMMSRFRSAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWQDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N     ++   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIEKATQKLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     L+  LLE A    K    ++P L  +      I + +
Sbjct: 960  GEDQSGQMTTIGFS--LYMELLESAVDALKE--GREPSLEDLTSNQTEIEMRM 1008


>gi|54296975|ref|YP_123344.1| transcription-repair coupling factor [Legionella pneumophila str.
            Paris]
 gi|53750760|emb|CAH12167.1| Transcription-repair coupling factor [Legionella pneumophila str.
            Paris]
          Length = 1153

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/496 (31%), Positives = 243/496 (48%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     +  H P  K    +W    ++       +A ++  L  +++ +       N
Sbjct: 530  HMISRYTGVDSEHAPLHKLGSDQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFN 589

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
                   K     PF+ T  Q  AI+ I++DM     M R++ GDVG GKT VA+ A   
Sbjct: 590  --QSEYIKFASGFPFTETPDQLQAIEQIIRDMQSPRPMDRLICGDVGFGKTEVAMRAAFV 647

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AV+ G Q  I+AP  +LA QH+E  +       + +E+++           L  +  G+ 
Sbjct: 648  AVQNGKQVCILAPTTLLAGQHFESFRDRFAEFPVNIELLSRFRSNKESEAVLAALQSGKV 707

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH LFQ++I +  L L+I+DE+HRFGV+Q+  +    T   +L MTATPIPRTL 
Sbjct: 708  DIVIGTHKLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLN 767

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  DIS I   PA R  IKT     N +  + E +   +  G + +++   ++  +
Sbjct: 768  MAMAGIRDISLIATPPAKRLAIKTFWQEKNDL-TIREAILREILRGGQVFYLHNNVQTIE 826

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                  V +   +L     + I   HG+M +   E +M  F +    +L+ TT+IE GID
Sbjct: 827  -----RVCQDLEALVPE--AKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGID 879

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ III+ A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RL  + + 
Sbjct: 880  IPTANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSL 939

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG +QSG    +     L   +L+ A  D K    + P
Sbjct: 940  EDLGAGFTLATHDLEIRGAGELLGEEQSGNMHAIGFN--LFMEMLDRAVNDLKA--GKTP 995

Query: 672  DLTSVRGQSIRILLYL 687
            +L++   Q   I L +
Sbjct: 996  ELSAPMHQGPEIDLRI 1011


>gi|309379212|emb|CBX22169.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 1164

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/453 (33%), Positives = 238/453 (52%), Gaps = 17/453 (3%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  L  R+  +   G    +     Q       +  T+ Q +AI  +++D++Q   M R
Sbjct: 583  ELLNLYARRAAQ--SGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDR 640

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++
Sbjct: 641  LVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVAGLS 700

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                    + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +
Sbjct: 701  RFNNSKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKR 760

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                  +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E + 
Sbjct: 761  LRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVL 819

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              L  G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  
Sbjct: 820  RELKRGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRD 872

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F      +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL 
Sbjct: 873  FLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLT 932

Query: 597  HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
               ++K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+ 
Sbjct: 933  PEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYT 990

Query: 654  SLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             +L+ A +D K    + PDL +  G +  I L+
Sbjct: 991  EMLKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1021


>gi|325955975|ref|YP_004286585.1| transcription-repair coupling factor [Lactobacillus acidophilus
           30SC]
 gi|325332540|gb|ADZ06448.1| transcription-repair coupling factor [Lactobacillus acidophilus
           30SC]
          Length = 1164

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 145/450 (32%), Positives = 237/450 (52%), Gaps = 19/450 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +   G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQRQFDDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++     A  ++ +E +  G+  +++GTH L    + +  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLEDGKIDLVVGTHRLLSKDVHFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +T ++   +I  VI +     +  G + +++  +I +  E      VE+   L  +  + 
Sbjct: 801 QTYVME--QIPSVIKDACLREMKRGGQVFYLHNRISDIDE-----TVEKLQQLIPN--AR 851

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+
Sbjct: 852 IASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLY 911

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G 
Sbjct: 912 QLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAGN 971

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +LG +Q G    +     L+  +L  A K+
Sbjct: 972 MLGAQQHGFIDSVGYD--LYSQMLSDAIKE 999


>gi|238749649|ref|ZP_04611154.1| Transcription-repair-coupling factor [Yersinia rohdei ATCC 43380]
 gi|238712304|gb|EEQ04517.1| Transcription-repair-coupling factor [Yersinia rohdei ATCC 43380]
          Length = 1148

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G    ++    Q   ++ PF  T  QE 
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAAK--SGFKFKLDRDQYQLFCQSFPFETTPDQEQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM +   M R++ GDVG GKT VA+ A   +V    Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLSVANNKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       + +E+++       ++  LE+ A G+  IIIGTH L Q  +++  L L+I
Sbjct: 668  NFRDRFATWPVRIEMMSRFRSAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWKDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N     +R   L     + IA
Sbjct: 788  TFVREYDSL-VVREAILREVLRGGQVYYLFNDVE-----NIEKATQRLAELVPE--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 840  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     L+  LLE A    K    ++P L  +      I + +
Sbjct: 960  GEDQSGQMTTIGFS--LYMELLESAVDALKE--GREPSLEDLTSNQTEIEMRM 1008


>gi|268589233|ref|ZP_06123454.1| transcription-repair coupling factor [Providencia rettgeri DSM 1131]
 gi|291315491|gb|EFE55944.1| transcription-repair coupling factor [Providencia rettgeri DSM 1131]
          Length = 1147

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/496 (31%), Positives = 244/496 (49%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S        + P  K     W    ++       +A ++  +  ++  K   G    
Sbjct: 526  HLISRYAGGADENAPLHKLGSDSWGRARQKAAEKVRDVAAELLDIYAQRAAK--AGFAFK 583

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             + +  Q+  +  PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   
Sbjct: 584  HDKQQYQEFCQGFPFETTPDQEVAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 643

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A+    Q  ++ P  +LAQQHY+  K    N  + +E+++       +++ + + A G+ 
Sbjct: 644  AINNNKQVAVLVPTTLLAQQHYDNFKDRFANWPVRIEMLSRFKTAKEQQQIITQTAEGKV 703

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L Q  + +  L L++VDE+HRFGV+ + ++        +L +TATPIPRTL 
Sbjct: 704  DILIGTHKLLQSDLVWKDLGLLVVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLN 763

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   PA R  +KT +   + +  V E +      G + Y++   +E  +
Sbjct: 764  MAMSGMRDLSIIATPPARRLAVKTFVRQYDDL-VVREAILRETLRGGQVYYLYNDVENIE 822

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            ++       R   L     +   + HG+M + + E VM  F +    +LI TT+IE GID
Sbjct: 823  KAKT-----RLEELVPE--ARFVVGHGQMRERELERVMTDFHHQRFNVLICTTIIETGID 875

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL   P  ++ +++ RL  + + 
Sbjct: 876  IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTTDAHKRLEAISSL 935

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG  QSG    +     L+  LLE A    K    ++P
Sbjct: 936  EDLGAGFALATHDLEIRGAGELLGEDQSGQMTTI--GFTLYMELLESAVDALKE--GREP 991

Query: 672  DLTSVRGQSIRILLYL 687
             L  +  Q   + L +
Sbjct: 992  SLEDLTSQQTEVELRM 1007


>gi|317472737|ref|ZP_07932050.1| ATP-dependent DNA helicase RecG [Anaerostipes sp. 3_2_56FAA]
 gi|316899763|gb|EFV21764.1| ATP-dependent DNA helicase RecG [Anaerostipes sp. 3_2_56FAA]
          Length = 458

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 174/451 (38%), Positives = 283/451 (62%), Gaps = 4/451 (0%)

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
             L+ ++  +++   PI V G+ A ++++++P+  T +Q+ A+ ++ +D+  +  M R++
Sbjct: 6   MNLMKQEHREEKNRYPIPVCGE-ADRLIQSLPYELTGAQKRALLEMQKDLMGEKVMNRLV 64

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT++A+I +    +AG Q V+MAP  +LA QHYE  ++      +   ++TG+
Sbjct: 65  QGDVGSGKTILAVILLLMCAKAGYQGVLMAPTEVLASQHYETFQELLGPFGVSAALLTGS 124

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +    +R+  + I + +  I+IGTHAL QD+++Y +L LVI DEQHRFGV+QR  L++K 
Sbjct: 125 VKAKEKREIYQGIKNHEYDIVIGTHALIQDAVEYDRLALVITDEQHRFGVRQREILSKKG 184

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             PHVL+M+ATPIPRTL +   GD+D+S I E P  R PIK  ++  +        ++  
Sbjct: 185 KEPHVLVMSATPIPRTLAIIMYGDLDVSVINELPKNRLPIKNCVVNQSYRPNAYRFMEKQ 244

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDS 536
           ++EG++ Y ICP +EE +     +V++  N L E F  S  I ++HG+M   +K+ +MD 
Sbjct: 245 VAEGRQIYIICPMVEESEAMEGENVIQYANMLREQFPPSIQIGVLHGKMKPKEKQKIMDE 304

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F   + ++L++TTVIEVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE  S CI + 
Sbjct: 305 FSECSIQILVSTTVIEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEHQSYCIFMS 364

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
                K +  RL VL  + DGF IA +DLK R  G+  G++QSGM  F++A    +  LL
Sbjct: 365 GVKK-KETMERLEVLNKSNDGFYIANQDLKLRGPGDFFGVRQSGMMDFVLADIYTNADLL 423

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           + A      +  ++ D ++++   +   + L
Sbjct: 424 KQASDAVHQLCEEEFDFSTLKNSRLEKQISL 454


>gi|329123308|ref|ZP_08251874.1| transcription-repair coupling factor [Haemophilus aegyptius ATCC
            11116]
 gi|327471404|gb|EGF16854.1| transcription-repair coupling factor [Haemophilus aegyptius ATCC
            11116]
          Length = 1160

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 163/480 (33%), Positives = 253/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 559  HKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAK--KGFTFKYDREEFQQFAATFPFE 616

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 617  ETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 676

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGTH L Q  +++
Sbjct: 677  LAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKF 736

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 737  NDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 796

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  V E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 797  ARRLSIKTFVRQNDDL-VVREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVP 850

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M +   E VM  F +    +L+ +T+IE GIDV  A+ IIIE A+HFG
Sbjct: 851  E--ARVIVGHGQMRERALERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFG 908

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N ++   GF++A  DL+ 
Sbjct: 909  LAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEI 968

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LL+ A K  K    ++P L  +  Q   I L +
Sbjct: 969  RGAGELLGNEQSGQIESIGFS--LYMELLDAAVKALKE--GREPSLEELTQQQADIELRV 1024


>gi|260440312|ref|ZP_05794128.1| putative transcription-repair coupling factor [Neisseria gonorrhoeae
            DGI2]
 gi|291043604|ref|ZP_06569320.1| transcription-repair coupling factor [Neisseria gonorrhoeae DGI2]
 gi|291012067|gb|EFE04056.1| transcription-repair coupling factor [Neisseria gonorrhoeae DGI2]
          Length = 1234

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/449 (33%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 655  LNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 714

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 715  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 774

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +    
Sbjct: 775  SKATKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLRAN 834

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 835  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 893

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 894  RGGQVFFLHNELDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 946

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 947  RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1006

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1007 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLK 1064

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1065 QAVRDLKK--GRRPDLDAPLGITTEIKLH 1091


>gi|77460087|ref|YP_349594.1| transcription-repair coupling factor [Pseudomonas fluorescens Pf0-1]
 gi|77384090|gb|ABA75603.1| transcription-repair coupling factor [Pseudomonas fluorescens Pf0-1]
          Length = 1149

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 236/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q+S
Sbjct: 552  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFPFEETPDQQS 609

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I+ + +DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 610  TIEAVREDMLSPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTTLLAQQHYN 669

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+ ++A G   I+IGTH L QD ++   L LVI
Sbjct: 670  SFRDRFADWPVTVEVMSRFKSAKEVNAAVAQLAEGNIDIVIGTHKLLQDDVKIKNLGLVI 729

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 730  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 789

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   V E L   L  G + Y++   ++  +             L     + I 
Sbjct: 790  TFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIE-----KCAAELAELVPE--ARIG 841

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 842  IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 901

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 902  RGRVGRSHHQAYAYLLTPPRQQITGDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 961

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    + L +
Sbjct: 962  GDGQSGQI--QAVGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEVNLRV 1010


>gi|186475762|ref|YP_001857232.1| transcription-repair coupling factor [Burkholderia phymatum STM815]
 gi|184192221|gb|ACC70186.1| transcription-repair coupling factor [Burkholderia phymatum STM815]
          Length = 1164

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 239/473 (50%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++    P++    +  K   +  F  T  Q 
Sbjct: 556  QWEKAKRKAAQQIRDTAAELLNLYARRAMREGHAFPLDPRDYV--KFAESFGFEETPDQA 613

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 614  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 673

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          ++++I  G   I+IGTH L    +Q+ +L LV
Sbjct: 674  QTFTDRFSDWPVRIAELSRFKTGKEVSASIQQINEGSVDIVIGTHKLLSSDVQFKRLGLV 733

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 734  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 793

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +  +   +L     + I
Sbjct: 794  KTFV-RREEDGVIREAMLRELKRGGQVYFLHNEVETIE-----NRRQMLEALVPE--ARI 845

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQ
Sbjct: 846  AVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRADKFGLAQLHQ 905

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL  ++  E+   GF +A  DL+ R  GE+
Sbjct: 906  LRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGAGFYLAMHDLEIRGTGEV 965

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 966  LGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1014


>gi|284007308|emb|CBA72650.1| transcription-repair coupling factor [Arsenophonus nasoniae]
          Length = 1146

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT   ++       +A ++  L +  Q   + G     +    Q   +  PF  T  QE 
Sbjct: 549  WTKAKQKAAEKIRDVAAEL--LDIHAQRSIKPGFAFKHDKMQYQLFCQGFPFETTVDQEQ 606

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A+    Q  ++ P  +LAQQH++
Sbjct: 607  AINAVLSDMCQPIAMDRLVCGDVGFGKTEVAMRAAFLAITNNQQVAVLVPTTLLAQQHFD 666

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       +++ +   A G+  I+IGTH L Q+ I+++ L L+I
Sbjct: 667  NFRDRFANWPVRIEMLSRFRSAKEQQQIINAAAEGKVDILIGTHKLLQNDIRWHALGLLI 726

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+ +  +        +L +TATPIPRTL +   G  D+S I   P+ R  +K
Sbjct: 727  IDEEHRFGVRHKELIKSMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPSRRLSVK 786

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   ++  +++      ER  SL     +   
Sbjct: 787  TFVRQYDDL-IVREAILREILRGGQVYYLFNDVKYIEKAK-----ERLESLVPE--ARFV 838

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F      +LI TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 839  IGHGQMRERELERVMTDFHRQRFNVLICTTIIETGIDIPSANTIIIERADHFGLAQLHQL 898

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  +   ED   GF +A  DL+ R  GE+L
Sbjct: 899  RGRVGRSYHQAYAYLLTPHPKAMTIDAQKRLEAIAALEDLGAGFALATHDLEIRGAGELL 958

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG    +     L+  LLE A +  K    ++P L  +  Q   I L +
Sbjct: 959  GAEQSGQLTTI--GFTLYMELLENAVEALKQ--GKEPSLEELTRQQTEIELRM 1007


>gi|191639457|ref|YP_001988623.1| Transcription-repair coupling factor (TRCF) [Lactobacillus casei
            BL23]
 gi|190713759|emb|CAQ67765.1| Transcription-repair coupling factor (TRCF) [Lactobacillus casei
            BL23]
 gi|205270976|emb|CAP07849.1| transcriptional-repair coupling factor [Lactobacillus casei BL23]
 gi|327383550|gb|AEA55026.1| Transcription-repair coupling factor [Lactobacillus casei LC2W]
 gi|327386742|gb|AEA58216.1| Transcription-repair coupling factor [Lactobacillus casei BD-II]
          Length = 1174

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 142/457 (31%), Positives = 245/457 (53%), Gaps = 17/457 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A ++  L  +++ +   G     +  +  K     P+  T  Q 
Sbjct: 567  EWQKTKRKVAARIEDIADELIDLYAKREAE--KGFAFGPDDDLQHKFEAEFPYPETPDQL 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + K+I  DM +   M R+L GDVG GKT VAL A   A++ G QA I+ P  ILAQQH+
Sbjct: 625  RSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHF 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +K+   +  I V +++        ++ ++ + +G   I++GTH L    + +  L L+
Sbjct: 685  DTMKERFADFPIKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + ++ Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 745  VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  +  G + +++  ++E+ + +  +        L     +S+
Sbjct: 805  QTFVMEQN-PGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ-----LEELVPD--ASV 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+V+  F +G   +L+ TT+IE G+D+ +A+ +IIENA+H+GL+QL+Q
Sbjct: 857  GYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++    +Y P   L++ +  RL  +KN      GF IA  DL  R  G +
Sbjct: 917  LRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKNFTELGSGFKIAMRDLSIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            LG +Q G    +     L+  +L+ A    + I + +
Sbjct: 977  LGKQQHGFIDSVGYD--LYTQMLQEAVNKRRGIKSAE 1011


>gi|149376584|ref|ZP_01894344.1| transcription-repair coupling protein Mfd [Marinobacter algicola
           DG893]
 gi|149359102|gb|EDM47566.1| transcription-repair coupling protein Mfd [Marinobacter algicola
           DG893]
          Length = 1038

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/496 (31%), Positives = 245/496 (49%), Gaps = 20/496 (4%)

Query: 198 SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
              S     +  H P  K     W++  ++ L      A ++  +  R++ +   G    
Sbjct: 421 HLISRYTGSDTDHAPLHKLGTDRWSNAKQKALEKIRDTAAELLDVYARREAR--KGFAFE 478

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
              +  +      PF  T  Q++AI+ + +DM  +  M R++ GDVG GKT VA+ A   
Sbjct: 479 DPKEAYRAFAAGFPFEETPDQQAAIEAVFEDMVSEKPMDRLVCGDVGFGKTEVAMRAAFM 538

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           A  +G Q  ++ P  +LAQQHYE  +     T + VE+++         KA+  I  G+A
Sbjct: 539 ATYSGKQVAVLVPTTLLAQQHYESFRDRFSETAVHVELLSRFRSGGQTTKAMAAIEAGKA 598

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I+IGTH L Q  I++  L LVI+DE+HRFGVQQ+ +L        +L +TATPIPRTL 
Sbjct: 599 DIVIGTHKLLQGDIKFKNLGLVIIDEEHRFGVQQKERLKALRAEVDMLNLTATPIPRTLN 658

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +      D+S I   PA R  +KT +   +    V E +   +  G + Y++   +   +
Sbjct: 659 MAMGHLRDLSIIATPPARRLSVKTFVRQRDE-AMVKEAILREVLRGGQVYFLHNDVATIE 717

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                   E    L     + + + HG+M + + E +M  F +    +L+ TT+IE GID
Sbjct: 718 -----KTAEDLRQLIPE--ARVGVAHGQMRERELEQIMSDFYHKRFNVLVCTTIIETGID 770

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
           +  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL  PP  ++ ++  RL  +   
Sbjct: 771 IPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPRSITSDAKKRLEAISEA 830

Query: 615 ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           +D   GF++A  DL+ R  GE+LG +QSG  + +     L+  LL+ A +  +    + P
Sbjct: 831 QDLGAGFMLATHDLEIRGAGELLGEEQSGQIESI--GFTLYMQLLDEAVEAIRE--GRTP 886

Query: 672 DLTSVRGQSIRILLYL 687
           +          + L +
Sbjct: 887 NAELPLSHGTEMNLRI 902


>gi|238762212|ref|ZP_04623184.1| Transcription-repair-coupling factor [Yersinia kristensenii ATCC
           33638]
 gi|238699559|gb|EEP92304.1| Transcription-repair-coupling factor [Yersinia kristensenii ATCC
           33638]
          Length = 1048

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/473 (32%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   ++       +A ++  +  ++  K   G    ++ +  Q   ++ PF  T  QE 
Sbjct: 450 WSRARQKAAEKVRDVAAELLDIYAQRAAK--SGFKFKLDKEQYQLFCQSFPFETTPDQEQ 507

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM +   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 508 AINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFD 567

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +       + +E+++       ++  L++ A G+  I+IGTH L Q  +++  L L++
Sbjct: 568 NFRDRFATWPVRIEMMSRFRSAKEQQVILDQAAEGKVDIVIGTHKLLQSDLRWQDLGLLV 627

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 628 VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 687

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  V E +   +  G + Y++   +E     N     +R   L     + IA
Sbjct: 688 TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIEKATQRLAELVPE--ARIA 739

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 740 IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 799

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 800 RGRVGRSHHQAYAYLLTPNPKAMTVDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELL 859

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G  QSG    +     L+  LLE A    K    ++P L  +      I + +
Sbjct: 860 GEDQSGQMTTIGFS--LYMELLESAVDALKE--GREPSLEDLTSNQTEIEMRM 908


>gi|254427874|ref|ZP_05041581.1| transcription-repair coupling factor [Alcanivorax sp. DG881]
 gi|196194043|gb|EDX89002.1| transcription-repair coupling factor [Alcanivorax sp. DG881]
          Length = 1159

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 147/474 (31%), Positives = 244/474 (51%), Gaps = 19/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT   ++       +A ++     R++ ++      +V+     +     PF  T  Q+
Sbjct: 555  QWTKARQKAAEKIHDVAAELLNTYARREAREGRQ--FDVDLNDYDRFSAAFPFEETPDQQ 612

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY
Sbjct: 613  AAIASVVADMQSSQPMDRLVCGDVGFGKTEVAMRAAFVAVENQTQVAVLVPTTLLAQQHY 672

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E       +  + +E+++       + + L+R+  G+  I++GTH L Q+++ +  L L+
Sbjct: 673  ESFTDRFADWPVNIEVLSRFRSAKEKTQVLQRLKEGKVDILVGTHQLLQETVAFDNLGLI 732

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+HRFGV+ + +L Q      +L +TATPIPRTL +   G  DIS I   P  R  +
Sbjct: 733  IVDEEHRFGVRHKERLKQMRAECDILTLTATPIPRTLNMAMSGMRDISIIATPPQKRLSV 792

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +   N    + E L   L  G + Y++   I+  +++         +       + +
Sbjct: 793  KTFVQQHNDTA-IKEALLRELLRGGQVYYLHNDIDTMEKT-------AADIRKLVPDARV 844

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E+VM  F +    +L++TT+IE GIDV  A+ III+ A+  GLAQLHQ
Sbjct: 845  GIAHGQMRERELEAVMSDFYHRRFNVLVSTTIIETGIDVPSANTIIIDRADKLGLAQLHQ 904

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L+   P  ++K++  RL  ++   D   GF++A +D++ R  GE+
Sbjct: 905  LRGRVGRSHHQAYAYLITPSPKVMTKDAIKRLEAIEQATDLGAGFMLASQDMEIRGAGEL 964

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            LG +Q G  + +     L+  +LE A +  K    + PD+         + L +
Sbjct: 965  LGEEQHGNIETIGFS--LYMEMLEQAVEALKR--GEQPDVEKPLSGGPELNLRI 1014


>gi|259047960|ref|ZP_05738361.1| transcription-repair coupling factor [Granulicatella adiacens ATCC
            49175]
 gi|259035380|gb|EEW36635.1| transcription-repair coupling factor [Granulicatella adiacens ATCC
            49175]
          Length = 1180

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/447 (31%), Positives = 243/447 (54%), Gaps = 19/447 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A ++  L  ++  +   G   + +    Q+  +  P++ T+ Q 
Sbjct: 570  EWAKTKRKVAAKIEDIADELIELYAKRDAE--KGYAFSRDTVEQQEFEQAFPYTETQDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             ++ +I +DM +   M R+L GDVG GKT VA+ A+  AV  G QA ++ P  ILA+QHY
Sbjct: 628  RSVAEIKEDMQKDKPMDRLLVGDVGYGKTEVAMRAVFKAVMDGKQAAVLVPTTILAEQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +   +    + +++    +  + + ++++  G   I+IGTH L    +Q+  L L+
Sbjct: 688  ENFVQRFSDYPFKIGLLSRFRSKKEQEETIKKLRKGSVDIVIGTHRLLSKDVQFLDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 748  IVDEEQRFGVKHKERLKQLKSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPV 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T ++  N +  + + ++  ++ G + +++  ++E  +        ++ + L        
Sbjct: 808  QTFVMEQNPM-TIRDGIEREMARGGQVFYLYNRVETIE--------KKADELRVLVPGCR 858

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + +IHG+MS+   E+++  F  G   +L+ TT+IE G+D+ + + + IENA++ GL+QL+
Sbjct: 859  VGVIHGQMSETTLENILFQFIEGEYDVLVTTTIIETGVDIPNVNTLFIENADYMGLSQLY 918

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+   L+Y P   L++ S  RL  +++      GF IA  DL  R  G 
Sbjct: 919  QLRGRVGRTNRIAYAYLMYQPDKVLTEVSEKRLQAMRDFTELGSGFKIAMRDLSIRGAGN 978

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +LG +Q G    +     L+  LL  A
Sbjct: 979  LLGKQQHGFIDSVGFD--LYSQLLSEA 1003


>gi|148653434|ref|YP_001280527.1| transcription-repair coupling factor [Psychrobacter sp. PRwf-1]
 gi|148572518|gb|ABQ94577.1| transcription-repair coupling factor [Psychrobacter sp. PRwf-1]
          Length = 1271

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/472 (33%), Positives = 242/472 (51%), Gaps = 19/472 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++ L     +A ++  +  R+Q K+ I     VE    +       F  T  Q +
Sbjct: 667  WDKAKQKALEQIHDVAAELLNMQARRQAKEGIH--FKVETAQYELFASQFAFEETPDQAN 724

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LA QH +
Sbjct: 725  AIDAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVNSGYQVAVLVPTTLLAGQHED 784

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  I VE ++    + ++ + LE +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 785  NFKDRFADWPIRVETLSRFGGKKYQDQVLEDLAAGKVDIVIGTHKLLQKDVKFANLGLMI 844

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++    +    L MTATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 845  VDEEHRFGVRHKERIKAIQSDVDSLSMTATPIPRTLNMALTGMRDMSIIATPPARRLSIK 904

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++       + E +   L  G + Y +   +   +      + E    L     + + 
Sbjct: 905  TFVMQKTN-QLMKEAILRELLRGGQVYLLHNDVASIE-----RMAENIRELVPE--ARVG 956

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M++   E VM  F +    +L+ TT+IE GIDV +A+ IIIE A+ FGLAQLHQL
Sbjct: 957  VAHGQMNERGLEQVMQQFYHKKFNVLVCTTIIETGIDVPNANTIIIERADKFGLAQLHQL 1016

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR    + C LL      L  ++  RL+ ++       GF++A EDL+ R  GEIL
Sbjct: 1017 RGRVGRSHHQAYCYLLVPSVKGLKGDAKKRLTAIERANTLGAGFMLASEDLEIRGAGEIL 1076

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            G +QSG  + +     +   +LE A K  K    ++PDL +    +  I L+
Sbjct: 1077 GKQQSGNMQAIGFSLYMD--MLERATKAIKA--GKEPDLNTPLSLTSDINLH 1124


>gi|163848640|ref|YP_001636684.1| transcription-repair coupling factor [Chloroflexus aurantiacus
            J-10-fl]
 gi|222526576|ref|YP_002571047.1| transcription-repair coupling factor [Chloroflexus sp. Y-400-fl]
 gi|163669929|gb|ABY36295.1| transcription-repair coupling factor [Chloroflexus aurantiacus
            J-10-fl]
 gi|222450455|gb|ACM54721.1| transcription-repair coupling factor [Chloroflexus sp. Y-400-fl]
          Length = 1185

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 153/459 (33%), Positives = 245/459 (53%), Gaps = 17/459 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+  A  + LA ++  L  ++Q K   G   + + +  +++  + P+  T  Q 
Sbjct: 563  DWERTKRKVRAAVQDLAEELLRLYAQRQLK--SGYAFSPDNEWQRELEASFPYLETDDQL 620

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI ++  DM +   M R++ GDVG GKT VAL A   AV+ G Q  I+ P  +LAQQH+
Sbjct: 621  RAIAEVKADMEKPTPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAILVPTTVLAQQHF 680

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +  +K      + VE+++       +   +  +A G+  IIIGTH L  + + +  L LV
Sbjct: 681  DTFRKRMAAFPVTVEMLSRFRSPKEQDAIIRDLARGKIDIIIGTHRLLSNDVVFRNLGLV 740

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L    T   VL +TATPIPRTL +   G  D+S I   P  R PI
Sbjct: 741  IIDEEQRFGVRHKERLKLMRTEVDVLTLTATPIPRTLHMALAGIRDLSVIDTPPEDRIPI 800

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT ++P +    + E ++  L    + Y +  +++         V ER   L     + I
Sbjct: 801  KTYVVPTDD-HLIQEVIRRELEREGQVYVVHNRVQSIY-----HVAERLRRLVPE--ARI 852

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG++++ + E VM  F  G   +L+ TT+IE G+DV +A+ III++A ++GLAQL+Q
Sbjct: 853  AVGHGQLAERELEQVMIDFFEGRYDVLVCTTIIESGLDVPNANTIIIDDATNYGLAQLYQ 912

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG   +   LLY+    ++ ++  RL  ++   +   GF IA  DL+ R  G +
Sbjct: 913  LRGRVGRGATRAYAYLLYNAARVMTNDARLRLEAIQEATELGAGFRIAMRDLEIRGAGNL 972

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            LG +QSG         +L+  LLE A +  K  + +  +
Sbjct: 973  LGAEQSGHI--AAVGFDLYSRLLEQAVRKLKQDVDELAE 1009


>gi|148360394|ref|YP_001251601.1| transcription repair coupling factor [Legionella pneumophila str.
            Corby]
 gi|296106539|ref|YP_003618239.1| transcription-repair coupling factor (superfamily II helicase)
            [Legionella pneumophila 2300/99 Alcoy]
 gi|148282167|gb|ABQ56255.1| transcription repair coupling factor [Legionella pneumophila str.
            Corby]
 gi|295648440|gb|ADG24287.1| transcription-repair coupling factor (superfamily II helicase)
            [Legionella pneumophila 2300/99 Alcoy]
          Length = 1153

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/496 (31%), Positives = 243/496 (48%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     +  H P  K    +W    ++       +A ++  L  +++ +       N
Sbjct: 530  HMISRYTGVDSEHAPLHKLGSDQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFN 589

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
                   K     PF+ T  Q  AI+ I++DM     M R++ GDVG GKT VA+ A   
Sbjct: 590  --QSEYIKFASGFPFTETPDQLQAIEQIIRDMQSPRPMDRLICGDVGFGKTEVAMRAAFV 647

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AV+ G Q  I+AP  +LA QH+E  +       + +E+++           L  +  G+ 
Sbjct: 648  AVQNGKQVCILAPTTLLAGQHFESFRDRFAEFPVNIELLSRFRSNKESEAVLAALQSGKV 707

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH LFQ++I +  L L+I+DE+HRFGV+Q+  +    T   +L MTATPIPRTL 
Sbjct: 708  DIVIGTHKLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLN 767

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  DIS I   PA R  IKT     N +  + E +   +  G + +++   ++  +
Sbjct: 768  MAMAGIRDISLIATPPAKRLAIKTFWQEKNDL-TIREAILREILRGGQVFYLHNNVQTIE 826

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                  V +   +L     + I   HG+M +   E +M  F +    +L+ TT+IE GID
Sbjct: 827  -----RVCQDLEALVPE--AKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGID 879

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ III+ A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RL  + + 
Sbjct: 880  IPTANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSL 939

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG +QSG    +     L   +L+ A  D K    + P
Sbjct: 940  EDLGAGFTLATHDLEIRGAGELLGEEQSGNMHAIGFN--LFMEMLDRAVNDLKA--GKTP 995

Query: 672  DLTSVRGQSIRILLYL 687
            +L++   Q   I L +
Sbjct: 996  ELSAPMHQGPEIDLRI 1011


>gi|90579501|ref|ZP_01235310.1| putative transcription-repair coupling factor [Vibrio angustum S14]
 gi|90439075|gb|EAS64257.1| putative transcription-repair coupling factor [Vibrio angustum S14]
          Length = 1153

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 153/473 (32%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+       +A ++  +  +++ K   G+   ++ +   +     P+  T  Q  
Sbjct: 556  WSKARRKAAEKVRDVAAELLDVYAKRELK--PGVKFTLDREAYAEFSAGFPYEETYDQAL 613

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQH+E
Sbjct: 614  AINAVLSDMCQTKVMDRLVCGDVGFGKTEVAMRAAFVAVDNNKQVTVLVPTTLLAQQHFE 673

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    NT + VE+++       +++ L  +  G+  I+IGTH L   S+ Y+ L L+I
Sbjct: 674  NFRDRFANTPVRVEVLSRFKTAKEQKQILADVEEGKIDILIGTHKLLNSSVNYHDLGLLI 733

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 734  VDEEHRFGVRQKEKIKAIRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 793

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +S G + Y++  +++  +++      E    L     + I 
Sbjct: 794  TFVRQSDD-AVIREAVLREISRGGQVYFLHNEVDSIEKTT-----EDLAKLIPE--ARIT 845

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              HG+M + + E +M  F +    +L+ TT+IE GIDV  A+ II++ A++ GLAQLHQL
Sbjct: 846  FAHGQMRERELEKIMGDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQL 905

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 906  RGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISSLEDLGAGFTLATHDLEIRGAGELL 965

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L   +LE A +  K    ++P L  +  Q   + L +
Sbjct: 966  GDEQSGQI--QSVGFSLFMEMLEQAVEALKE--GKEPSLDDLLKQQTEVELRI 1014


>gi|22125678|ref|NP_669101.1| transcription-repair coupling factor [Yersinia pestis KIM 10]
 gi|45441565|ref|NP_993104.1| transcription-repair coupling factor [Yersinia pestis biovar Microtus
            str. 91001]
 gi|108807895|ref|YP_651811.1| transcription-repair coupling factor [Yersinia pestis Antiqua]
 gi|108812169|ref|YP_647936.1| transcription-repair coupling factor [Yersinia pestis Nepal516]
 gi|145599106|ref|YP_001163182.1| transcription-repair coupling factor [Yersinia pestis Pestoides F]
 gi|149366410|ref|ZP_01888444.1| transcription-repair coupling factor [Yersinia pestis CA88-4125]
 gi|162421681|ref|YP_001607245.1| transcription-repair coupling factor [Yersinia pestis Angola]
 gi|165925529|ref|ZP_02221361.1| transcription-repair coupling factor [Yersinia pestis biovar
            Orientalis str. F1991016]
 gi|165938427|ref|ZP_02226984.1| transcription-repair coupling factor [Yersinia pestis biovar
            Orientalis str. IP275]
 gi|166008143|ref|ZP_02229041.1| transcription-repair coupling factor [Yersinia pestis biovar Antiqua
            str. E1979001]
 gi|166210634|ref|ZP_02236669.1| transcription-repair coupling factor [Yersinia pestis biovar Antiqua
            str. B42003004]
 gi|167401750|ref|ZP_02307241.1| transcription-repair coupling factor [Yersinia pestis biovar Antiqua
            str. UG05-0454]
 gi|167421853|ref|ZP_02313606.1| transcription-repair coupling factor [Yersinia pestis biovar
            Orientalis str. MG05-1020]
 gi|167426319|ref|ZP_02318072.1| transcription-repair coupling factor [Yersinia pestis biovar
            Mediaevalis str. K1973002]
 gi|218928761|ref|YP_002346636.1| transcription-repair coupling factor [Yersinia pestis CO92]
 gi|229841610|ref|ZP_04461768.1| transcription-repair coupling factor [Yersinia pestis biovar
            Orientalis str. PEXU2]
 gi|229843727|ref|ZP_04463870.1| transcription-repair coupling factor [Yersinia pestis biovar
            Orientalis str. India 195]
 gi|229894469|ref|ZP_04509651.1| transcription-repair coupling factor [Yersinia pestis Pestoides A]
 gi|229902491|ref|ZP_04517610.1| transcription-repair coupling factor [Yersinia pestis Nepal516]
 gi|294504177|ref|YP_003568239.1| transcription-repair coupling factor [Yersinia pestis Z176003]
 gi|21958592|gb|AAM85352.1|AE013781_3 transcription-repair coupling factor [Yersinia pestis KIM 10]
 gi|45436426|gb|AAS61981.1| transcription-repair coupling factor [Yersinia pestis biovar Microtus
            str. 91001]
 gi|108775817|gb|ABG18336.1| transcription-repair coupling factor [Yersinia pestis Nepal516]
 gi|108779808|gb|ABG13866.1| transcription-repair coupling factor [Yersinia pestis Antiqua]
 gi|115347372|emb|CAL20270.1| transcription-repair coupling factor [Yersinia pestis CO92]
 gi|145210802|gb|ABP40209.1| transcription-repair coupling factor [Yersinia pestis Pestoides F]
 gi|149290784|gb|EDM40859.1| transcription-repair coupling factor [Yersinia pestis CA88-4125]
 gi|162354496|gb|ABX88444.1| transcription-repair coupling factor [Yersinia pestis Angola]
 gi|165913542|gb|EDR32162.1| transcription-repair coupling factor [Yersinia pestis biovar
            Orientalis str. IP275]
 gi|165922638|gb|EDR39789.1| transcription-repair coupling factor [Yersinia pestis biovar
            Orientalis str. F1991016]
 gi|165992525|gb|EDR44826.1| transcription-repair coupling factor [Yersinia pestis biovar Antiqua
            str. E1979001]
 gi|166207814|gb|EDR52294.1| transcription-repair coupling factor [Yersinia pestis biovar Antiqua
            str. B42003004]
 gi|166960338|gb|EDR56359.1| transcription-repair coupling factor [Yersinia pestis biovar
            Orientalis str. MG05-1020]
 gi|167048855|gb|EDR60263.1| transcription-repair coupling factor [Yersinia pestis biovar Antiqua
            str. UG05-0454]
 gi|167054674|gb|EDR64478.1| transcription-repair coupling factor [Yersinia pestis biovar
            Mediaevalis str. K1973002]
 gi|229680537|gb|EEO76634.1| transcription-repair coupling factor [Yersinia pestis Nepal516]
 gi|229689335|gb|EEO81398.1| transcription-repair coupling factor [Yersinia pestis biovar
            Orientalis str. India 195]
 gi|229694073|gb|EEO84121.1| transcription-repair coupling factor [Yersinia pestis biovar
            Orientalis str. PEXU2]
 gi|229703488|gb|EEO90505.1| transcription-repair coupling factor [Yersinia pestis Pestoides A]
 gi|262362294|gb|ACY59015.1| transcription-repair coupling factor [Yersinia pestis D106004]
 gi|294354636|gb|ADE64977.1| transcription-repair coupling factor [Yersinia pestis Z176003]
 gi|320014765|gb|ADV98336.1| transcription-repair coupling factor [Yersinia pestis biovar
            Medievalis str. Harbin 35]
          Length = 1148

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  +  ++  K   G     + +  Q   ++ PF  T  QE 
Sbjct: 550  WSRARQKAAEKVRDVAAELLDIYAQRAVK--SGFKFKHDREQYQLFCQSFPFETTPDQEQ 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNKQVAVLVPTTLLAQQHFD 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       + +E+++       ++  LE+ A G+  I+IGTH L Q  + ++ L L+I
Sbjct: 668  NFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGTHKLLQSDLHWHDLGLLI 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  + E +   +  G + Y++   +E     N   V ++   L     + I 
Sbjct: 788  TFVREYDSL-VIREAILREILRGGQVYYLYNDVE-----NIEKVTQKLAELVPE--ARIT 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+H GLAQLHQL
Sbjct: 840  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHLGLAQLHQL 899

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  +S ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     L+  LLE A    K    ++P L  +      I + +
Sbjct: 960  GEDQSGQMTTIGFS--LYMELLESAVDALKE--GREPSLEDLTSNQTEIEMRM 1008


>gi|227015821|gb|ACP17918.1| putative transcription-repair coupling factor [Pseudomonas
            nitroreducens]
          Length = 1154

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/473 (32%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  +   G                 PF  T  Q++
Sbjct: 557  WQKAKRKAAEQVRDVAAELLDIYARRAAR--KGYAFKDPQADYATFSAGFPFEETPDQQT 614

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ ++ DM  +  M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQHY 
Sbjct: 615  AIEAVVADMLAEKPMDRLVCGDVGFGKTEVAMRAAFVAVHSGRQVAVLVPTTLLAQQHYN 674

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+ ++A G+  I+IGTH L QD +++  L LVI
Sbjct: 675  SFRDRFADWPVTVEVMSRFKSAKEVEGAVGQLAEGKVDIVIGTHKLLQDDVKFKNLGLVI 734

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 735  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVR 794

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++   +   + E L   L  G + Y++  +++  ++            L     + I 
Sbjct: 795  TFVME-EQKSVIKEALLRELLRGGQVYFLHNEVKTIEKCARD-----LAELVPE--ARIG 846

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M++ + E VM  F +    +L+A+T+IE GIDV  A+ I+IE A+ FGLAQLHQL
Sbjct: 847  IGHGQMNERELERVMSDFYHKRFNVLVASTIIETGIDVPSANTILIERADKFGLAQLHQL 906

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + N +D   GF++A  DL+ R  GE+L
Sbjct: 907  RGRVGRSHHQAYAYLLTPPRKQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGELL 966

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 967  GEGQSGQI--QAVGFTLYMEMLERAVKAIRK--GEQPNLEQPLGGGPDINLRV 1015


>gi|162447096|ref|YP_001620228.1| ATP-dependent DNA helicase [Acholeplasma laidlawii PG-8A]
 gi|161985203|gb|ABX80852.1| ATP-dependent DNA helicase [Acholeplasma laidlawii PG-8A]
          Length = 649

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 190/658 (28%), Positives = 309/658 (46%), Gaps = 33/658 (5%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           LS   GVG K      +         +   DL+   P  + +      +  +      TI
Sbjct: 5   LSLIPGVGPKNLKTFKRH------GISNTYDLVTNLPKKYENFS-LVDVENLKHLEEATI 57

Query: 73  TGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKL 132
            G I   + F   K+R           +  +       + +   F    K+ V GK    
Sbjct: 58  IGLI--SAPFYTVKKRVVLTTTTLLVQDKVVKLLIFGRDYISKEFSLNDKVIVKGKYNMF 115

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVLPEWIEK 191
           KN I       + + S+ ++ P I+  Y +   +S    +K+I    S  L  + E +  
Sbjct: 116 KNEIN------VTYISKKIDTPNIQPKYQI-EHISDRTIQKMIEYVFSNNLVDVFETLPT 168

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
             ++ +       A   +H P+   D E    A+ R   +E     +   L      K  
Sbjct: 169 KFIEHEKLMHRKTAILTMHFPKNETDLE---IAQYRFKVEEAFFHLMKYHL--SMPPKLK 223

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
             P++ +    ++ +  +P+  T  Q+ A+ D  +D      M R++QGDVG+GKT V  
Sbjct: 224 RTPLSYDIGWVKEQISLLPYQLTLDQQEAVNDCFRDFKSDYSMYRLIQGDVGTGKTFVTF 283

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           IA   A+ AG Q   +AP  ILA+QHYE   K+  +      ++T ++    +++ + R+
Sbjct: 284 IAALGAISAGYQVAFLAPTEILARQHYENFNKHFGHLP--SGLLTSSL--KDKKETMNRL 339

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
                +I+ GTH L  +++ + KL LV++DEQH+FGV+ R  L +K+     + ++ATPI
Sbjct: 340 NSNDVNIVFGTHILSSEAVIFDKLGLVVIDEQHKFGVETRESLIKKSVTGDTIYLSATPI 399

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PR+L LT  G +++S I +KP    PI++ ++    I ++I  LKV     ++++ + P 
Sbjct: 400 PRSLSLTYFGSLEVSNIKQKPVNTPPIESYLLDDKDISKIIAALKVAGQNNEQSFIVVPA 459

Query: 492 IEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           I E   +   S+   F+ L  HF   +  +IHG++   + E +MD F      +L++TT+
Sbjct: 460 ISEG--NKSHSIHSVFSILEPHFNPDNFYVIHGQLKYEEIELIMDRFMQNPKGILLSTTI 517

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           IEVGIDV +AS III  A++FGL+QLHQLRGRVGRG     C  +           RL+ 
Sbjct: 518 IEVGIDVKNASTIIIMGADNFGLSQLHQLRGRVGRGSIPGKCYFVSSKKD----VERLNF 573

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           L  T DGFL+++ DLK R  G    I QSG  +F          LL+   KD K+ + 
Sbjct: 574 LLQTTDGFLLSQYDLKLRGPGVFSSIIQSGYTRFEYLDLNTDLKLLQGIVKDVKYYVE 631


>gi|94499512|ref|ZP_01306049.1| transcription-repair coupling factor [Oceanobacter sp. RED65]
 gi|94428266|gb|EAT13239.1| transcription-repair coupling factor [Oceanobacter sp. RED65]
          Length = 1143

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/473 (32%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W++  R+ L      A ++  +  +++ K   G     +    +    + PF  T  Q+ 
Sbjct: 547  WSAQRRKALEKIRDTAAELLEVYAKREAKPGHGFSYPRD--EYELFAADFPFEETADQKQ 604

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  ++ DM + N M R++ GDVG GKT VAL A   A + G Q  ++ P  +LAQQH+E
Sbjct: 605  AINAVVTDMMKANPMDRLVCGDVGFGKTEVALRAAFLAAQNGKQVAVLVPTTLLAQQHFE 664

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  I VE I+     A++  AL+ +  G   I++GTH L Q  +++  L L+I
Sbjct: 665  TFRDRFADWPIKVEGISRFKTGANKTAALKGLEDGTTDIVVGTHKLLQKDVKFKDLGLLI 724

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGVQQ+ ++        +L MTATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 725  IDEEHRFGVQQKERIKALRADVDILTMTATPIPRTLNMAMSGVRDLSIIATPPARRLAVK 784

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +  + V E +   +  G + Y++  +++  +        E    L     + I 
Sbjct: 785  TFVKKWDE-NLVKEAVLREILRGGQVYYLHNEVKTIE-----KTAEDLAKLIPD--ARIG 836

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M++   ESVM  F +    +L+ TT++E GIDV +A+ I++E A+ FGLAQLHQL
Sbjct: 837  VAHGQMTERQLESVMSDFYHKRFNVLVCTTIVETGIDVPNANTIVLERADKFGLAQLHQL 896

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   L+      ++K++  RL  + + +D   GF++A  DL+ R  GE+L
Sbjct: 897  RGRVGRSHHQAYAYLMTPIEKKITKDAEKRLDAISHAQDLGAGFMLATHDLEIRGAGELL 956

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  +       L+  LLE A +  K    ++  L S       I L +
Sbjct: 957  GEEQSGHIQN--VGFSLYMELLERAVEAIKQ--GKELSLDSPVETGAEINLRI 1005


>gi|261494132|ref|ZP_05990635.1| transcription repair coupling factor [Mannheimia haemolytica serotype
            A2 str. BOVINE]
 gi|261496027|ref|ZP_05992437.1| transcription repair coupling factor [Mannheimia haemolytica serotype
            A2 str. OVINE]
 gi|261308277|gb|EEY09570.1| transcription repair coupling factor [Mannheimia haemolytica serotype
            A2 str. OVINE]
 gi|261310298|gb|EEY11498.1| transcription repair coupling factor [Mannheimia haemolytica serotype
            A2 str. BOVINE]
          Length = 1177

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 157/480 (32%), Positives = 243/480 (50%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    ++       +A ++  +  +++ +   G     +     +     P+ 
Sbjct: 575  HKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQ--TGFAFAYDKAEFDQFSATFPYE 632

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q+ AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q VI+AP  +
Sbjct: 633  ETDDQKIAINAVISDMCQAKAMDRLVCGDVGFGKTEVAIRATFLAVMNHKQVVILAPTTL 692

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  + VE+++       ++  L+ +A G+  I++GTH L QD + +
Sbjct: 693  LAQQHYENFKDRFANYPVNVEVLSRFKTAKEQKTILQNVAEGKVDILVGTHKLLQDDVAF 752

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+++DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I   P
Sbjct: 753  RDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSIIASPP 812

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  + E +   +  G + Y++   +   +     +  E+   L  
Sbjct: 813  ARRLLIKTFVRQSDEM-VIREAILREILRGGQVYYLHNDVATIE-----NCAEKLAELVP 866

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ IIIE A+ FG
Sbjct: 867  E--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFG 924

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   +L   P  L+K++  RL  +    N   GF +A  DL+ 
Sbjct: 925  LAQLHQLRGRVGRSHHQAYAYMLTPHPKTLTKDAEQRLEAMSTIDNLGAGFALATHDLEI 984

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     +   LLE A K  +    ++P L  +      I L +
Sbjct: 985  RGAGELLGSEQSGQIESIGFSLYMD--LLENAVKALQE--GREPSLDEITQHQAEIELRV 1040


>gi|116495978|ref|YP_807712.1| transcription-repair coupling factor [Lactobacillus casei ATCC 334]
 gi|116106128|gb|ABJ71270.1| transcription-repair coupling factor [Lactobacillus casei ATCC 334]
          Length = 1174

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/457 (30%), Positives = 245/457 (53%), Gaps = 17/457 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A ++  L  +++ +   G     +  +  K     P+  T  Q 
Sbjct: 567  EWQKTKRKVAARIEDIADELIDLYAKREAE--KGFAFGPDDDLQHKFEAEFPYPETPDQL 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + K+I  DM +   M R+L GDVG GKT VAL A   A++ G QA I+ P  ILAQQH+
Sbjct: 625  RSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHF 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +K+   +  I V +++        ++ ++ + +G   I++GTH L    + +  L L+
Sbjct: 685  DTMKERFADFPIKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + ++ Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 745  VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  +  G + +++  ++E+ + +  +        L     +S+
Sbjct: 805  QTFVMEQN-PGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ-----LEELVPD--ASV 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+V+  F +G   +L+ TT+IE G+D+ +A+ +IIENA+H+GL+QL+Q
Sbjct: 857  GYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++    +Y P   L++ +  RL  +K+      GF IA  DL  R  G +
Sbjct: 917  LRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            LG +Q G    +     L+  +L+ A    + I + +
Sbjct: 977  LGKQQHGFIDSVGYD--LYTQMLQEAVNKRRGIKSAE 1011


>gi|301067528|ref|YP_003789551.1| transcription-repair coupling factor (superfamily II helicase)
            [Lactobacillus casei str. Zhang]
 gi|300439935|gb|ADK19701.1| Transcription-repair coupling factor (superfamily II helicase)
            [Lactobacillus casei str. Zhang]
          Length = 1174

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/457 (30%), Positives = 245/457 (53%), Gaps = 17/457 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A ++  L  +++ +   G     +  +  K     P+  T  Q 
Sbjct: 567  EWQKTKRKVAARIEDIADELIDLYAKREAE--KGFAFGPDDDLQHKFEAEFPYPETPDQL 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + K+I  DM +   M R+L GDVG GKT VAL A   A++ G QA I+ P  ILAQQH+
Sbjct: 625  RSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHF 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +K+   +  I V +++        ++ ++ + +G   I++GTH L    + +  L L+
Sbjct: 685  DTMKERFADFPIKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + ++ Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 745  VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  +  G + +++  ++E+ + +  +        L     +S+
Sbjct: 805  QTFVMEQN-PGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ-----LEELVPD--ASV 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+V+  F +G   +L+ TT+IE G+D+ +A+ +IIENA+H+GL+QL+Q
Sbjct: 857  GYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++    +Y P   L++ +  RL  +K+      GF IA  DL  R  G +
Sbjct: 917  LRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            LG +Q G    +     L+  +L+ A    + I + +
Sbjct: 977  LGKQQHGFIDSVGYD--LYTQMLQEAVNKRRGIKSAE 1011


>gi|288554664|ref|YP_003426599.1| transcription-repair coupling factor [Bacillus pseudofirmus OF4]
 gi|288545824|gb|ADC49707.1| transcription-repair coupling factor (TRCF) [Bacillus pseudofirmus
            OF4]
          Length = 1180

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/449 (30%), Positives = 236/449 (52%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    +   +  E +A  +  L   ++     G   + +G          P+  T+ Q 
Sbjct: 574  DWKKVKKRVQSSVEDIADDLIKLYAEREA--SKGYAYSKDGAEQADFEGTFPYQETEDQI 631

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             A+++I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  I+ P  ILAQQHY
Sbjct: 632  RAVEEIKEDMEKERPMDRLLCGDVGYGKTEVAIRAAFKAIMDGKQVAILVPTTILAQQHY 691

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E IK+   +  I + +++    +  + + L+ +  G   +I+GTH L    I +  L L+
Sbjct: 692  ETIKERFSDFPINIGVLSRFRSRKEQTETLKGLKAGSVDLIVGTHRLLSKDIVFKDLGLL 751

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 752  IVDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 811

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +      + E+ + L     + +
Sbjct: 812  QTYVVEYN-ASLIREAIERELTRGGQVYFLYNRVEDIE-----RMTEQISMLVPD--AKV 863

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            +  HG+M++ + ES+M  F  G   +L+ TT+IE G+D+ + + +II +A+  GL+QL+Q
Sbjct: 864  SFAHGQMNERELESIMLDFLEGNSDVLVTTTIIETGVDIPNVNTLIINDADKMGLSQLYQ 923

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            +RGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 924  IRGRVGRSNRVAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNL 983

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +Q G  + +     L+  +L+ A ++
Sbjct: 984  LGAQQHGFIESVGFD--LYSQMLKEAIEE 1010


>gi|294788315|ref|ZP_06753558.1| transcription-repair coupling factor [Simonsiella muelleri ATCC
           29453]
 gi|294483746|gb|EFG31430.1| transcription-repair coupling factor [Simonsiella muelleri ATCC
           29453]
          Length = 1131

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/470 (32%), Positives = 246/470 (52%), Gaps = 17/470 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   ++ +      A ++  L  ++  +   G    +     Q       +  T+ Q +
Sbjct: 539 WSKAKQKAIEKARDTAAELLNLYAQRAAQ--TGFKFEINELDYQAFADGFGYEETEDQAA 596

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L+D++Q   M R++ GDVG GKT VAL A   AV AG Q  ++AP  +L +QH +
Sbjct: 597 AIVSVLKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMAGKQVAVLAPTTLLVEQHAK 656

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  +  + +  ++        + AL  +A G   I+IGTH L QD+IQ+  L LVI
Sbjct: 657 NFADRFADFPVQIAQLSRFNSTKDTKSALAGMADGTVDIVIGTHKLVQDNIQFKNLGLVI 716

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV+Q+ +L +      +L +TATPIPRTL +   G  D S IT  P+ R  +K
Sbjct: 717 IDEEHRFGVRQKEQLKRLRANVDLLTLTATPIPRTLSMALDGLRDFSLITTAPSRRLAVK 776

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T + P +    + E +   L  G + +++  +++  +     ++ ++  +L     + I 
Sbjct: 777 TFVKPFSE-ASIQEAVLRELKRGGQVFFLHNEVDTIE-----NMRDKLENLLP--QARIG 828

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG++ + + E VM  F N    +L+ +T+IE GID+ +A+ III  A+ FG+AQLHQL
Sbjct: 829 VAHGQLRERELEQVMRDFLNQKFNVLLCSTIIETGIDIPNANTIIINRADKFGIAQLHQL 888

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVL---KNTEDGFLIAEEDLKQRKEGEILGI 636
           RGRVGR    +   LL    L+K++  RL  +        GF +A +DL+ R  GEILG 
Sbjct: 889 RGRVGRSHHQAYAYLLTPEYLTKDAQKRLDAILSADELGAGFSLAMQDLEIRGAGEILGE 948

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            QSG  + +     L+  +L+ A +D K    + PDL S  G +  I L+
Sbjct: 949 GQSG--EMMQVGLTLYTEMLKQAVRDLKK--GKTPDLDSPLGVNTDIKLH 994


>gi|239630377|ref|ZP_04673408.1| transcription-repair coupling factor [Lactobacillus paracasei subsp.
            paracasei 8700:2]
 gi|239526660|gb|EEQ65661.1| transcription-repair coupling factor [Lactobacillus paracasei subsp.
            paracasei 8700:2]
          Length = 1174

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/446 (31%), Positives = 241/446 (54%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A ++  L  +++ +   G     +  +  K     P+  T  Q 
Sbjct: 567  EWQKTKRKVAARIEDIADELIDLYAKREAE--KGFAFGPDDDLQHKFEAEFPYPETPDQL 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + K+I  DM +   M R+L GDVG GKT VAL A   A++ G QA I+ P  ILAQQH+
Sbjct: 625  RSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHF 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +K+   +  I V +++        ++ ++ + +G   I++GTH L    + +  L L+
Sbjct: 685  DTMKERFADFPIKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + ++ Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 745  VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  +  G + +++  ++E+ + +  +        L     +S+
Sbjct: 805  QTFVMEQN-PGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ-----LEELVPD--ASV 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+V+  F +G   +L+ TT+IE G+D+ +A+ +IIENA+H+GL+QL+Q
Sbjct: 857  GYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++    +Y P   L++ +  RL  +K+      GF IA  DL  R  G +
Sbjct: 917  LRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G    +     L+  +L+ A
Sbjct: 977  LGKQQHGFIDSVGYD--LYTQMLQEA 1000


>gi|167855057|ref|ZP_02477830.1| transcription-repair coupling factor [Haemophilus parasuis 29755]
 gi|167853795|gb|EDS25036.1| transcription-repair coupling factor [Haemophilus parasuis 29755]
          Length = 1149

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/481 (33%), Positives = 251/481 (52%), Gaps = 21/481 (4%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    ++       +A ++  +  +++ +   G     +     +     PF 
Sbjct: 549  HKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKREAQ--KGFAFEYDRDAFVQFSNTFPFE 606

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   AV    Q  I+AP  +
Sbjct: 607  ETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVMNHKQVAILAPTTL 666

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+E  K    N  I VE+++       +++ L ++A G+  I++GTH L Q+ +Q+
Sbjct: 667  LAQQHFENFKDRFANYPINVEVLSRFKTAKAQKEILAKVADGKVDILVGTHKLLQEDVQF 726

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+++DE+HRFGV+Q+ ++ Q      +L +TATPIPRTL +   G  D+S I   P
Sbjct: 727  KDLGLLVIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMALNGMRDLSIIASPP 786

Query: 453  AGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            A R  IKT +   +  D VI E +   +  G + Y++   +   +     +  ++   L 
Sbjct: 787  ARRLSIKTFVRQSD--DTVIKEAILREILRGGQVYYLHNDVATIE-----NTAQQLAELV 839

Query: 512  EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ IIIE A+ F
Sbjct: 840  PE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKF 897

Query: 572  GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLK 626
            GLAQLHQLRGRVGR    +   +L  PP  L+K++  RL  +    N   GF++A  DL+
Sbjct: 898  GLAQLHQLRGRVGRSHHQAYAYMLTPPPKTLTKDAQQRLEAMSTIDNLGAGFVLATHDLE 957

Query: 627  QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             R  GE+LG +QSG  + L     L+  LLE A K  +    ++P L  +  Q + I L 
Sbjct: 958  IRGAGELLGSEQSGQIESLGFS--LYMELLENAVKALQE--GREPTLDEITQQQVDIELR 1013

Query: 687  L 687
            +
Sbjct: 1014 V 1014


>gi|295836314|ref|ZP_06823247.1| ATP-dependent DNA helicase RecG [Streptomyces sp. SPB74]
 gi|295825956|gb|EFG64571.1| ATP-dependent DNA helicase RecG [Streptomyces sp. SPB74]
          Length = 772

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/547 (28%), Positives = 256/547 (46%), Gaps = 36/547 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL     +G   +  +++ +           DLL ++P  + +R    +++E+  + 
Sbjct: 4   LDEPLKKV--LGPPTAKVMAEHL-----GLHTVGDLLHHYPRRYAERGELTRLAELPLDE 56

Query: 69  IVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
            VT+   +++         + +  ++ L DG+G + L+FF R     ++    G +    
Sbjct: 57  HVTVVARVAEARVLTFNAGRGKRLEVTLTDGSGRLQLVFFGRGVHKPQHDLLPGTRAMFA 116

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVN-------FPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           GK+     ++ + HP Y     +             +  +Y     L      K +   L
Sbjct: 117 GKVSVFNRKLQLAHPAYELLAEESDAREAAGSWASSLLPIYPATAKLESWKIAKAVDAVL 176

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
                  + +   L + +    + EA   IH P+   + E     R+RL +DE    Q A
Sbjct: 177 PSASEALDPLPDSLREGRGLLPLPEALVKIHRPQSKAEVEAA---RDRLKWDEAFVLQTA 233

Query: 240 LLLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L   R    +   +P               +PF+ T+ Q    ++I  D++  + M R+L
Sbjct: 234 LARRRHADAQLPAVPRRPASDGLLTAFDARLPFTLTEGQRKVSREIFDDLATDHPMHRLL 293

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT-----------QN 347
           QG+VGSGKT+VAL AM A V+AGGQAV++AP  +LAQQH+  I +               
Sbjct: 294 QGEVGSGKTMVALRAMLAVVDAGGQAVMLAPTEVLAQQHHRSITEMMGDLASGGTLGAAE 353

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
               V ++TG+M  A RRK L  +  G+A I+IGTHAL +D ++++ L LV+VDEQHRFG
Sbjct: 354 HATGVVLLTGSMGAAARRKVLLDLVTGEAGIVIGTHALIEDVVKFHDLGLVVVDEQHRFG 413

Query: 408 VQQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
           V+QR  L  + A  PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI T ++P  
Sbjct: 414 VEQRDALRSKGARPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAQ 473

Query: 467 R----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
                +    ER++   + G +AY +CP+I +++E+       +                
Sbjct: 474 DKPHFLARAWERVREEAAAGHQAYVVCPRIGDEEETAGAKGRRKGAKAGADAARGAKGAA 533

Query: 523 GRMSDID 529
            R    +
Sbjct: 534 SRAKAAE 540


>gi|118444361|ref|YP_877116.1| transcription-repair coupling factor [Clostridium novyi NT]
 gi|118134817|gb|ABK61861.1| transcription-repair coupling factor [Clostridium novyi NT]
          Length = 1170

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 142/459 (30%), Positives = 233/459 (50%), Gaps = 19/459 (4%)

Query: 219  EWTSPARE-RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EWT   ++ R A +E+    + L  +R   K         +    ++     P+  T  Q
Sbjct: 573  EWTKAKKKVRKAINEIAEELVKLYAIRSTLKGH---KFGKDTVWQKQFEDEFPYDETPDQ 629

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +AI++I +DM     M R+L GDVG GKT VA+ A   +V  G Q  ++ P  ILA+QH
Sbjct: 630  LTAIQEIKEDMESSKAMDRLLCGDVGYGKTEVAIRAAFKSVMDGKQVALLVPTTILAEQH 689

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y  + K   +  + +++I+     A  +  L+ +  G   ++IGTH + Q  +++  L L
Sbjct: 690  YTNLVKRFCDFPVKIDMISRFKTSAQVKAILKEVKAGNVDVLIGTHRILQKDVEFKDLGL 749

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +IVDE+ RFGV  + K+        VL +TATPIPRTL ++  G  DIS I   P  R P
Sbjct: 750  LIVDEEQRFGVTHKEKIKNLKKNVDVLTLTATPIPRTLHMSLTGIRDISVIETPPEERYP 809

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            ++T ++  N    +++ +   +  G + Y++  ++   KE     +      L     + 
Sbjct: 810  VQTYVVEFND-QLILDAITREMDRGGQVYFVYNRVGSIKE-----MAAYLAKLVPD--AK 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M + + E VM  F      +L+ TT+IE G+D+ +A+ +II +A+ FGL+QL+
Sbjct: 862  VGIAHGQMPERELEKVMFDFMKKEYDILVCTTIIETGLDIQNANTMIIYDADKFGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++   L Y     L++ +  RL  +K+      GF IA  DL+ R  G 
Sbjct: 922  QLRGRVGRTNRMAYAYLTYKKDKVLTEVAEKRLKAIKDFTELGSGFKIAMRDLEIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ++G  Q G    +     L+  +LE   K  K  + ++P
Sbjct: 982  LIGAAQHGHMASVGYD--LYCRMLEDTIKLVKGEIDKEP 1018


>gi|89075823|ref|ZP_01162207.1| putative transcription-repair coupling factor [Photobacterium sp.
            SKA34]
 gi|89048444|gb|EAR54020.1| putative transcription-repair coupling factor [Photobacterium sp.
            SKA34]
          Length = 1153

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+       +A ++  +  +++ K   G    ++ +   +     P+  T  Q  
Sbjct: 556  WSKARRKAAEKVRDVAAELLDVYAKRELK--PGFKFTLDREAYAEFSAGFPYEETYDQAL 613

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQH+E
Sbjct: 614  AINAVMSDMCQTKVMDRLVCGDVGFGKTEVAMRAAFVAVDNNKQVTVLVPTTLLAQQHFE 673

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    NT + VE+++       +++ L  +  G+  I+IGTH L   S+ Y+ L L++
Sbjct: 674  NFRDRFANTPVRVEVLSRFKTSKEQKQILADVEEGKIDILIGTHKLLNSSVNYHDLGLLV 733

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 734  VDEEHRFGVRQKEKIKAIRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 793

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +S G + Y++  +++  +++      E    L     + I 
Sbjct: 794  TFVRQSDD-AVIREAILREISRGGQVYFLHNEVDSIEKTT-----EDLAKLIPE--ARIT 845

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              HG+M + + E +M  F +    +L+ TT+IE GIDV  A+ II++ A++ GLAQLHQL
Sbjct: 846  FAHGQMRERELEKIMGDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQL 905

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 906  RGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISSLEDLGAGFTLATHDLEIRGAGELL 965

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L   +LE A +  K    ++P L  +  Q   + L +
Sbjct: 966  GDEQSGQI--QSVGFSLFMEMLEQAVEALKE--GKEPSLDDLLKQQTEVELRI 1014


>gi|192358851|ref|YP_001982241.1| transcription-repair coupling protein Mfd [Cellvibrio japonicus
            Ueda107]
 gi|190685016|gb|ACE82694.1| transcription-repair coupling protein Mfd [Cellvibrio japonicus
            Ueda107]
          Length = 1184

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/481 (32%), Positives = 242/481 (50%), Gaps = 21/481 (4%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    R+        A ++  +  R+  +   G               + PF 
Sbjct: 581  HKLGSESWQKAKRKAAEQIRDTAAELLEVYARRAAR--KGFAFPDPQTAYAAFSASFPFE 638

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q+ AI+ +++DM     M R++ GDVG GKT VA+ A   A  AG Q  I+AP  +
Sbjct: 639  ETPDQQRAIEAVVKDMLSPKPMDRLVCGDVGFGKTEVAMRAAFVASHAGKQVAILAPTTL 698

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE +K       I +E+++         + LER+A G+  II+GTH L Q  I++
Sbjct: 699  LAQQHYESLKDRFAEWPITIEVLSRFRTTKEVNQVLERLAEGKVDIIVGTHKLLQPDIKF 758

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV+Q+ ++        +L +TATPIPRTL ++  G  D+S I   P
Sbjct: 759  KNLGLLIIDEEHRFGVRQKEQIKALRAEIDILTLTATPIPRTLNMSMAGIRDLSIIATPP 818

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  +KT +   +    + E +   +  G + Y++  +++  +        +    L E
Sbjct: 819  ARRLSVKTFVRTYDE-AVIKEAILREILRGGQVYYLHNEVDTIE--------KVARELQE 869

Query: 513  HFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                + IA+ HG+M + D E VM  F +    +++ TT+IE GID+  A+ III  A+ F
Sbjct: 870  LIPEARIAVGHGQMRERDLERVMSDFYHKRFNIMVCTTIIETGIDIPSANTIIINRADKF 929

Query: 572  GLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GLAQLHQLRGRVGR    +   LL      ++ ++  RL  +   ED   GF +A  D++
Sbjct: 930  GLAQLHQLRGRVGRSHHQAYAYLLTPERRAMTDDAVKRLEAISAAEDLGAGFTLATYDME 989

Query: 627  QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             R  GE+LG +QSG  + +     L+  +L+ A K  +    +  D+     +SI I L 
Sbjct: 990  IRGAGELLGEEQSGQIQTIGFS--LYMEMLDRAVKAIRQ--GKQADIEQALKESIDINLR 1045

Query: 687  L 687
            +
Sbjct: 1046 I 1046


>gi|227544685|ref|ZP_03974734.1| transcription-repair coupling factor [Lactobacillus reuteri CF48-3A]
 gi|300909073|ref|ZP_07126536.1| transcription-repair coupling factor [Lactobacillus reuteri SD2112]
 gi|227185331|gb|EEI65402.1| transcription-repair coupling factor [Lactobacillus reuteri CF48-3A]
 gi|300894480|gb|EFK87838.1| transcription-repair coupling factor [Lactobacillus reuteri SD2112]
          Length = 1179

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 136/447 (30%), Positives = 235/447 (52%), Gaps = 19/447 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R   +  E +A ++  L  +++ +   G     +  + ++   N P++ T+ Q 
Sbjct: 572  EWAKTKRRVSSKIEDIADELVDLYAKREAE--KGYAFPKDDYLQKQFDANFPYNETRDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A+  AV  G Q   + P  ILAQQHY
Sbjct: 630  RSIDEIKEDMEKPKPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              + +  +   I + +++        ++    +  G   +++GTH +    +++  L L+
Sbjct: 690  NTLMRRFEGFPINIALMSRFKTPKELKETEAGLKDGSVDVVVGTHRILSKDVEFKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ LG  D+S +   PAGR PI
Sbjct: 750  IVDEEQRFGVKHKEKLKQLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPI 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T ++  N    + + +   +  G + Y++  ++ + +        E    L E    + 
Sbjct: 810  QTYVMEQNS-SAIRDGIIREMQRGGQVYYLHNRVHDIE--------ETVAWLQELVPEAR 860

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I  I+G+MS+ + E+V+  F  G   +L+ T++IE G+D+ +A+ + +ENA+  GLAQL+
Sbjct: 861  IGYINGQMSENELETVLYEFIQGNYDILVTTSIIETGVDIPNANTLFVENADRMGLAQLY 920

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            Q+RGR+GR   ++    +Y P   L++    RL+ +++      GF IA  DL  R  G 
Sbjct: 921  QIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLAIRGAGN 980

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +LG +Q G    +     L+ ++L  A
Sbjct: 981  LLGKQQHGFIDSVGYD--LYSAMLSDA 1005


>gi|260072636|gb|ACX30534.1| transcription-repair coupling factor [uncultured SUP05 cluster
           bacterium]
 gi|269468648|gb|EEZ80288.1| transcription-repair coupling factor (superfamily II helicase)
           [uncultured SUP05 cluster bacterium]
          Length = 1143

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 151/461 (32%), Positives = 239/461 (51%), Gaps = 20/461 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W+   ++       +A ++  +  ++Q +     P   +   +   + + PF  T  Q 
Sbjct: 549 QWSKAKKKASEALHDIAAELLEIYAKRQSQTGFAFPEPTDSYSS--FVASFPFEETPDQL 606

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             ++++L DM     M R++ GDVG GKT +A+ A   AVE+G Q  I+ P  +LA QH+
Sbjct: 607 KTMEEVLADMQSTKPMDRLVCGDVGFGKTEIAMRAAFIAVESGKQVAILVPTTLLANQHH 666

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +       N  I +  ++       +++    +  G+  IIIGTH L Q SI+Y  L LV
Sbjct: 667 QSFADRFINYPIEISSLSRFQTPKEQKQIKLLLLEGKIDIIIGTHKLIQGSIKYKNLGLV 726

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+Q+  L +      +L MTATPIPRTL +      ++S I   P GR  I
Sbjct: 727 IIDEEHRFGVKQKESLKKFRGQSDILTMTATPIPRTLNMALGSLRELSIIATPPQGRSAI 786

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T +   N  + V E     L  G + + +   I+        ++ +    L  +    I
Sbjct: 787 QTFVNEWND-NTVKEACSRELHRGGQIFVLHNDIDSID-----NMAQILKDLMPNIHVRI 840

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HG+M   + E +M  F +G  ++L+ TT+IE GID+ +A+ III NA++FGLAQLHQ
Sbjct: 841 A--HGQMPSKELERIMSDFYHGRFQILVCTTIIETGIDIPNANTIIINNAQNFGLAQLHQ 898

Query: 579 LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGR    +   L+   H  LSKN+  RL  +++ E+   GF++A  DL+ R  G++
Sbjct: 899 LRGRVGRSHHRAYAYLVIKSHQSLSKNAKKRLDAIESLEELGAGFMLANHDLEIRGAGDL 958

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEI---ARKDAKHILTQDP 671
           LG  QSG    +     L+  LL+    A +  + I  +DP
Sbjct: 959 LGDNQSGKISEIGFN--LYHDLLKRTIDAMRAGRQINPEDP 997


>gi|110833889|ref|YP_692748.1| transcription-repair coupling factor [Alcanivorax borkumensis SK2]
 gi|110647000|emb|CAL16476.1| transcription-repair coupling factor [Alcanivorax borkumensis SK2]
          Length = 1159

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 149/475 (31%), Positives = 245/475 (51%), Gaps = 21/475 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT   ++       +A ++     R++ ++       ++     +   + PF  T  Q+
Sbjct: 555  QWTKARQKAAEKIHDVAAELLNTYARREAREGRQ--FELDLNDYDRFSASFPFEETPDQQ 612

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM     M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY
Sbjct: 613  AAIASVVADMQSSQPMDRLVCGDVGFGKTEVAMRAAFVAVENQTQVAVLVPTTLLAQQHY 672

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E       +  + +E+++       + + L+R+  G+  I++GTH L Q+++ +  L L+
Sbjct: 673  ESFTDRFADWPVNIEVLSRFRSAKEKTQVLQRLKEGKVDILVGTHQLLQETVSFDNLGLI 732

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+HRFGV+ + +L Q      +L +TATPIPRTL +   G  DIS I   P  R  +
Sbjct: 733  IVDEEHRFGVRHKERLKQMRAECDILTLTATPIPRTLNMAMSGMRDISIIATPPQKRLSV 792

Query: 459  KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            KT +   N  D VI E L   L  G + Y++   I+  +++         +       + 
Sbjct: 793  KTFVQQHN--DTVIKEALLRELLRGGQVYYLHNDIDTMEKT-------AADIRKLVPDAR 843

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M + + E+VM  F +    +L++TT+IE GIDV  A+ III+ A+  GLAQLH
Sbjct: 844  VGIAHGQMRERELEAVMSDFYHRRFNVLVSTTIIETGIDVPSANTIIIDRADKLGLAQLH 903

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR    +   L+   P  ++K++  RL  ++   D   GF++A +D++ R  GE
Sbjct: 904  QLRGRVGRSHHQAYAYLITPSPKVMTKDAIKRLEAIEQATDLGAGFMLASQDMEIRGAGE 963

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            +LG +Q G  + +     L+  +LE A    K    + PD+         + L +
Sbjct: 964  LLGEEQHGNIETIGFS--LYMEMLEQAVDALKR--GEQPDVEKPLSGGPELNLRI 1014


>gi|227533044|ref|ZP_03963093.1| transcription-repair coupling factor (TRCF) [Lactobacillus paracasei
            subsp. paracasei ATCC 25302]
 gi|227189445|gb|EEI69512.1| transcription-repair coupling factor (TRCF) [Lactobacillus paracasei
            subsp. paracasei ATCC 25302]
          Length = 1174

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/457 (30%), Positives = 245/457 (53%), Gaps = 17/457 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A ++  L  +++ +   G     +  +  K     P+  T  Q 
Sbjct: 567  EWQKTKRKVAARIEDIADELIDLYAKREAE--KGFAFGPDDDLQHKFEAEFPYPETPDQL 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + K+I  DM +   M R+L GDVG GKT VAL A   A++ G QA I+ P  ILAQQH+
Sbjct: 625  RSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHF 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +K+   +  I V +++        ++ ++ + +G   I++GTH L    + +  L L+
Sbjct: 685  DTMKERFADFPIKVGLLSRFQTPHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + ++ Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 745  VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  +  G + +++  ++E+ + +  +        L     +S+
Sbjct: 805  QTFVMEQN-PGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ-----LEELVPD--ASV 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+V+  F +G   +L+ TT+IE G+D+ +A+ +IIENA+H+GL+QL+Q
Sbjct: 857  GYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++    +Y P   L++ +  RL  +K+      GF IA  DL  R  G +
Sbjct: 917  LRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            LG +Q G    +     L+  +L+ A    + I + +
Sbjct: 977  LGKQQHGFIDSVGYD--LYTQMLQEAVNKRRGIKSAE 1011


>gi|110803113|ref|YP_699740.1| transcription-repair coupling factor [Clostridium perfringens SM101]
 gi|110683614|gb|ABG86984.1| transcription-repair coupling factor [Clostridium perfringens SM101]
          Length = 1162

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/459 (31%), Positives = 231/459 (50%), Gaps = 19/459 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +       +AG +  L    +     G   + + +  ++     P+  T  Q 
Sbjct: 567  EWQKAKAKVRKSINDIAGDLVKLYA--ERSTVKGYKFSKDTQWQKQFEDEFPYEETPDQL 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QHY
Sbjct: 625  AAIEDIKSDMESNKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +K+      I +++I+    +  + + L+ +  G   I+IGTH L    IQ+  L L+
Sbjct: 685  KNMKRRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R PI
Sbjct: 745  IVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYPI 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T ++  N    + + +   ++ G + Y++  ++E        S+ E  N + E      
Sbjct: 805  QTYVVEQND-QLIRDAILREINRGGQVYFVHNRVE--------SIQEVANYIQELVPECK 855

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              +IHG+M++   E+ M  F      +L+ T++IE GID+ + + +I+ +A+  GL+QL+
Sbjct: 856  ATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQLY 915

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR  +++    LY     L++ +  RL  LK+      GF IA  DL+ R  G 
Sbjct: 916  QLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGN 975

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ++G  Q G    +     L+  +LE   K  K  + ++P
Sbjct: 976  MMGSAQHGHMAAIGYD--LYCRMLEDTIKIVKGEIEREP 1012


>gi|227894501|ref|ZP_04012306.1| transcriptional repair coupling factor [Lactobacillus ultunensis
           DSM 16047]
 gi|227863660|gb|EEJ71081.1| transcriptional repair coupling factor [Lactobacillus ultunensis
           DSM 16047]
          Length = 1164

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/450 (32%), Positives = 237/450 (52%), Gaps = 19/450 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +   G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQKQFDDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++     A  ++ +E +  G+  +++GTH L    + +  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLEDGKIDLVVGTHRLLSKDVHFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +T ++   +I  V+ +     +  G + +++  +I +  E      VE+   L  +  + 
Sbjct: 801 QTYVME--QIPSVVKDACLREMQRGGQVFYLYNRISDIDE-----TVEKLQQLIPN--AR 851

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+
Sbjct: 852 IASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLY 911

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G 
Sbjct: 912 QLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAGN 971

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +LG +Q G    +     L+  +L  A K+
Sbjct: 972 MLGAQQHGFIDSVGYD--LYSQMLSDAIKE 999


>gi|167747443|ref|ZP_02419570.1| hypothetical protein ANACAC_02163 [Anaerostipes caccae DSM 14662]
 gi|317471172|ref|ZP_07930543.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA]
 gi|167652805|gb|EDR96934.1| hypothetical protein ANACAC_02163 [Anaerostipes caccae DSM 14662]
 gi|316901387|gb|EFV23330.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA]
          Length = 1175

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/589 (27%), Positives = 275/589 (46%), Gaps = 37/589 (6%)

Query: 121  RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK----IIV 176
            +K    GK +K+KN   +    Y+ H    V       +Y     ++V+  +K    I  
Sbjct: 488  KKAAFKGKGEKIKNFADISIGDYVVHEKHGVG------IYRGIEKITVNNVEKDYISIEY 541

Query: 177  EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
            +    L +L   +++  + K      A A        K    EW    +         A 
Sbjct: 542  KGGDNLFILASALDQ--IAKY-----ASANAKKPRLNKLGGNEWKKTTKRVKGQVRETAK 594

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  L   +Q K+      + +    ++     P+  T+ Q +AI+D+ +DM     M R
Sbjct: 595  ELVELYAVRQAKEG--YVYDKDTVWQREFEEMFPYEETQDQLNAIEDVKRDMESTKIMDR 652

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY    +  QN  + V +++
Sbjct: 653  LICGDVGYGKTEVAIRAAFKAVTNGKQVAYLVPTTILAQQHYNTFCERFQNYPMTVRVMS 712

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                   +++ +E +  G   ++IGTH L    ++Y  L L+I+DE+ RFGV  + K+  
Sbjct: 713  RFCTPREQKETMEGLKKGIVDVVIGTHRLLSKDVKYKDLGLLIIDEEQRFGVGHKEKIKT 772

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                  VL ++ATPIPRTL ++ +G  D+S + E P  R+ I+T ++  N  + V E + 
Sbjct: 773  MKKDVDVLSLSATPIPRTLHMSLIGIRDMSILEEPPHDRRAIQTYVMEYNE-ELVKEAVH 831

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              ++ G + Y++  ++    E            L  +  + +A  HG+M + + E++M  
Sbjct: 832  REMTRGGQVYYVYNRVNNIAEITS-----ELQKLLPN--AKVAFAHGQMRERELENIMMQ 884

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F      +L++TT+IE G+D+ + + +II +A   GL+QL+QLRGRVGR    +   L+Y
Sbjct: 885  FMEKEIDVLVSTTIIETGLDIPNVNTMIIHDANQLGLSQLYQLRGRVGRSNRNAFAFLMY 944

Query: 597  HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
                 L + +  RL  ++   D   G+ IA  DL+ R  G +LG +QSG  + +     L
Sbjct: 945  KRDTLLKETAEKRLQAIREFTDLGSGYKIAMRDLEIRGAGNLLGEEQSGHMEAVGYD--L 1002

Query: 652  HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL---YLYQYNEAFQFI 697
            +  +L  A    K  L++D D  +    +I   L   Y+    E  +  
Sbjct: 1003 YCKMLNDAVLRLKGELSEDTDFDTTLDLNIDAFLPSAYIRNEVEKLELY 1051


>gi|225024865|ref|ZP_03714057.1| hypothetical protein EIKCOROL_01753 [Eikenella corrodens ATCC 23834]
 gi|224942394|gb|EEG23603.1| hypothetical protein EIKCOROL_01753 [Eikenella corrodens ATCC 23834]
          Length = 1271

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 236/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 694  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 753

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 754  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 813

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 814  SKATKVALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 873

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 874  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 932

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 933  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 985

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 986  RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1045

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1046 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 1103

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1104 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1130


>gi|170720851|ref|YP_001748539.1| transcription-repair coupling factor [Pseudomonas putida W619]
 gi|169758854|gb|ACA72170.1| transcription-repair coupling factor [Pseudomonas putida W619]
          Length = 1149

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  +   G                 PF  T  Q++
Sbjct: 552  WQKAKRKAAEQVRDVAAELLDIYARRAAR--KGYAFADPAADYATFSAGFPFEETPDQQN 609

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQHY 
Sbjct: 610  AIEAVRADMLAAKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHYN 669

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A   +A G+  I+IGTH L QD +++  L LV+
Sbjct: 670  SFRDRFADWPVTVEVMSRFKSAKEVASAAADLAEGKIDILIGTHKLLQDDVRFKDLGLVV 729

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 730  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVR 789

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N    V E L   L  G + Y++   ++  +             L     + I 
Sbjct: 790  TFVMEQNN-STVKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 841

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ I+IE A+ FGLAQLHQL
Sbjct: 842  IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVIERADKFGLAQLHQL 901

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      +S ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 902  RGRVGRSHHQAYAYLLTPARQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 961

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +      P+L    G    I L L
Sbjct: 962  GEGQSGQI--QAVGFTLYMEMLERAVKAIRK--GTQPNLEQPLGGGPEINLRL 1010


>gi|161506855|ref|YP_001576809.1| transcriptional repair coupling factor [Lactobacillus helveticus
           DPC 4571]
 gi|160347844|gb|ABX26518.1| transcriptional repair coupling factor [Lactobacillus helveticus
           DPC 4571]
          Length = 1165

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 142/450 (31%), Positives = 239/450 (53%), Gaps = 19/450 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +   G   + +  + ++     P++ T  Q 
Sbjct: 563 EWAKIKRKVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQKQFEDAFPYAETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R++ GDVG GKT VAL A   A++   Q   +AP  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAIQDNKQVAFLAPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++     A  ++ +E +  G+  +++GTH L    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTLAESKEIIEGLKEGKIDLVVGTHRLLSKDVEFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +T ++   +I  V+ +     +    + +++  +I +  E      VE+   L  +  + 
Sbjct: 801 QTYVME--QIPSVVRDACLREMQRDGQVFYLHNRISDIDE-----TVEKLQQLIPN--AR 851

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+
Sbjct: 852 IASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLY 911

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G 
Sbjct: 912 QLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAGN 971

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +LG +Q G    +     L+  +L  A K+
Sbjct: 972 MLGAQQHGFIDSVGYD--LYSQMLSDAIKE 999


>gi|83645461|ref|YP_433896.1| transcription-repair coupling factor [Hahella chejuensis KCTC 2396]
 gi|83633504|gb|ABC29471.1| transcription-repair coupling factor [Hahella chejuensis KCTC 2396]
          Length = 1149

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/497 (31%), Positives = 251/497 (50%), Gaps = 22/497 (4%)

Query: 198  SFPSIAEAFNIIHNPRKAKDFE-WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     +    P      + W++  R+     +  A ++  +  +++     G    
Sbjct: 529  HLISRYAGLDDKLAPINKLGTDRWSAAKRQAAEKIKDSAAELLEIYAKREL--HTGYACP 586

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
               +  +      PF  T  Q +AI  +LQDM +   M R++ GDVG GKT VA+ A   
Sbjct: 587  PPDEHYRAFSAAFPFEETPDQATAINAVLQDMMKPRPMDRLVCGDVGFGKTEVAMRAAFL 646

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A  AG Q  I+ P  +LAQQH++  +    +T I +E+I+         K  ++++ G+ 
Sbjct: 647  AAHAGRQVAILTPTTLLAQQHFQSFQDRFADTAINIELISRFRSAGDIEKVKDKLSDGKV 706

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I++GTH L Q  IQ+  L L+I+DE+HRFGVQQ+ K+        +L +TATPIPRTL 
Sbjct: 707  DILVGTHKLLQKDIQFKNLGLLIIDEEHRFGVQQKEKVKSLRANIDILTLTATPIPRTLN 766

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            L+  G  D+S I   P  R  +KT +   N    + E +   +  G + +++  ++    
Sbjct: 767  LSFQGVRDLSIIATPPEKRLSVKTFVQEHNN-SIIKEAVLREILRGGQVFFLHNEVNTI- 824

Query: 497  ESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                    +  + L E    + +A+ HG+M + + E VM  F +    +L+ TT+IE GI
Sbjct: 825  -------NKAASELQEMVPDARVAVAHGQMRERELERVMSDFYHKRFNVLMCTTIIETGI 877

Query: 556  DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN 613
            D+  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL  PP  L++++  RL  + +
Sbjct: 878  DIPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPRNLTEDAKKRLDAISS 937

Query: 614  TED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
             +D   GF +A  DL+ R  GE+LG +QSG  + +     L+  LL+ A K  +    ++
Sbjct: 938  AQDLGAGFTLATHDLEIRGAGELLGEEQSGHIQNI--GFTLYLQLLDAAVKAMRE--GKE 993

Query: 671  PDLTSVRGQSIRILLYL 687
             DLT    Q   + L L
Sbjct: 994  LDLTQPIDQGCEVNLRL 1010


>gi|170726164|ref|YP_001760190.1| transcription-repair coupling factor [Shewanella woodyi ATCC 51908]
 gi|169811511|gb|ACA86095.1| transcription-repair coupling factor [Shewanella woodyi ATCC 51908]
          Length = 1157

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/477 (31%), Positives = 249/477 (52%), Gaps = 21/477 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  W    ++ +     +A ++  +  R+Q +       +++ +       + PF  T  
Sbjct: 555  NESWAKAKKKAIEKIRDVAVELLDVYARRQARPGD--ACHIDQEEYALFSNSFPFEETVD 612

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            QE++I  +L DMS    M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQ
Sbjct: 613  QETSINAVLTDMSSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTLLAQQ 672

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            H+E  K    +  + +E+++       ++  LE +++G+  I+IGTH L Q   ++  L 
Sbjct: 673  HFENFKDRFADWPVKIEVMSRFKTAKEQKAVLEDLSNGKVDIVIGTHKLLQSEAKFENLG 732

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+++DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R 
Sbjct: 733  LLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRL 792

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
             +KT +   +    + E L   +  G + Y++   +E  +        +R   + E    
Sbjct: 793  AVKTFVREYDN-AAIREALLREILRGGQVYFLHNTVETIE--------KRAAEISELLPE 843

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + +   HG+M + + E VM  F +    +L+ TT+IE GID+  A+ I+IE A+ FGLAQ
Sbjct: 844  ARVITAHGQMRERELEKVMSDFYHQRFNVLVCTTIIETGIDIPSANTIVIERADKFGLAQ 903

Query: 576  LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
            LHQLRGRVGR    +   L+   P  ++K++  RL  +   ED   GF++A +DL+ R  
Sbjct: 904  LHQLRGRVGRSHHQAYAYLMTPHPKSMTKDARKRLEAIGALEDLGAGFMLATQDLEIRGA 963

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            GE+LG +QSG    +     L+  +LE A K  K    ++P L+ +  +   I L +
Sbjct: 964  GELLGDEQSGHISKI--GFTLYMEMLEDAVKSLKE--GKEPSLSQMLRRQCEIDLRI 1016


>gi|330808512|ref|YP_004352974.1| transcription-repair coupling factor [Pseudomonas brassicacearum
            subsp. brassicacearum NFM421]
 gi|327376620|gb|AEA67970.1| Transcription-repair coupling factor [Pseudomonas brassicacearum
            subsp. brassicacearum NFM421]
          Length = 1149

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 237/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++             +      PF  T  Q++
Sbjct: 552  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYETFSAGFPFEETVDQQT 609

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 610  TIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTTLLAQQHYN 669

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L QD +++  L LVI
Sbjct: 670  SFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDVKFKSLGLVI 729

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 730  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 789

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   V E L   L  G + Y++   ++  +             L     + I 
Sbjct: 790  TFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 841

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 842  IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 901

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 902  RGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 961

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 962  GDGQSGQI--QAVGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 1010


>gi|297538863|ref|YP_003674632.1| transcription-repair coupling factor [Methylotenera sp. 301]
 gi|297258210|gb|ADI30055.1| transcription-repair coupling factor [Methylotenera sp. 301]
          Length = 1142

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 153/472 (32%), Positives = 236/472 (50%), Gaps = 19/472 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++ L      A ++  L  ++  ++       +     +      PF  T  Q  
Sbjct: 550  WEKAKKKALKQIRDTAAELLNLYAQRASRRG--HAFTLSLHDYETFCEGFPFEETPDQLE 607

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+++++DM     M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH+ 
Sbjct: 608  AIENVIKDMQSGRPMDRLVCGDVGFGKTEVALRAAFVAVMGGRQVAVLVPTTLLAEQHFN 667

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K       I +  I+       +++AL  +  GQ  IIIGTH L Q  +++  L LV+
Sbjct: 668  NFKDRFAEWPIKIAEISRFRTAKEQKEALAGLEAGQIDIIIGTHRLIQKDVKFKNLGLVV 727

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L        +L +TATPIPRTL +   G  + S IT  P  R  IK
Sbjct: 728  LDEEHRFGVRQKEQLKALRAEVDILTLTATPIPRTLSMAMEGLREFSIITTPPQKRLSIK 787

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T     +    + E +      G + Y++  +++        S+ E+   +     + IA
Sbjct: 788  TFHTDYSE-GIIREAVMREFKRGGQVYFLHNEVDTIH-----SMREKLERIVPD--ARIA 839

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG++ + + E VM  F N    LL+ TT+IE GIDV  A+ II+  A+ FGLAQ+HQL
Sbjct: 840  VAHGQLRERELEHVMRDFYNQRYNLLLCTTIIETGIDVPTANTIILNKADMFGLAQMHQL 899

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++  +  RL  ++  ED   GF +A  DL+ R  GE+L
Sbjct: 900  RGRVGRSHHQAYAYLLTDPDRKITVQAQKRLDAIQLMEDLGAGFHLAMHDLEIRGAGELL 959

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            G  QSG  + +     L+  +L  A K  K    ++PDL +  G +  I L+
Sbjct: 960  GDSQSGEMQEI--GFHLYSDMLNHAVKQLKA--GKEPDLNAPLGVTTEINLH 1007


>gi|150014978|ref|YP_001307232.1| transcription-repair coupling factor [Clostridium beijerinckii NCIMB
            8052]
 gi|149901443|gb|ABR32276.1| transcription-repair coupling factor [Clostridium beijerinckii NCIMB
            8052]
          Length = 1166

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 147/461 (31%), Positives = 238/461 (51%), Gaps = 19/461 (4%)

Query: 217  DFEWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
              EW    A+ R + +E+    + L  MR   K       + + +  ++     PF  T 
Sbjct: 572  SAEWQKAKAKARKSINEIAEDLVKLYAMRSTVKGH---KFSKDTEWQKQFEDEFPFEETP 628

Query: 276  SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
             Q +++++I  DM     M R+L GDVG GKT VA+ A   AV  G Q  ++ P  ILA+
Sbjct: 629  DQLTSLEEIKIDMESDKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVALLVPTTILAE 688

Query: 336  QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
            QHY+ IK    +  I +++++       +++ L+++  G   I+IGTH L    IQ+  L
Sbjct: 689  QHYKNIKNRFSDFPIKIDMVSRFRTAKQQKEILQKVKEGNLDILIGTHRLVSKDIQFKDL 748

Query: 396  ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
             L+IVDE+ RFGV+Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R
Sbjct: 749  GLLIVDEEQRFGVKQKEKIKGIKKNVDVLTLSATPIPRTLHMSLSGVRDISVIETPPEER 808

Query: 456  KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             P++T ++  N    + + +   +  G + Y++  ++E+ +      + +   SL     
Sbjct: 809  YPVQTYVVEQND-QLIRDAILREIGRGGQVYFVYNRVEDIE-----RMAKYVQSLVPE-- 860

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            S + I HG+M++   E  M  F +    +L+ TT+IE G+D+ + + III +A+  GL+Q
Sbjct: 861  SKVGIAHGQMAERQLEKEMFDFMSEEYNVLVCTTIIETGMDIQNVNTIIIYDADKMGLSQ 920

Query: 576  LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
            L+QLRGRVGR   I+   LLY     L++ +  RL  LK+      GF IA  DL+ R  
Sbjct: 921  LYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGA 980

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            G ++G  Q G    +     L+  +LE   K  K  + ++P
Sbjct: 981  GNMMGSSQHGHMASIGYD--LYCRMLEDTVKLLKGEIQKEP 1019


>gi|219850580|ref|YP_002465013.1| transcription-repair coupling factor [Chloroflexus aggregans DSM
            9485]
 gi|219544839|gb|ACL26577.1| transcription-repair coupling factor [Chloroflexus aggregans DSM
            9485]
          Length = 1182

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/456 (34%), Positives = 247/456 (54%), Gaps = 17/456 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+  A  + LA ++  L  ++Q K   G   + + +  +++  + P+  T  Q 
Sbjct: 562  DWERTKRKVRAAVQELAEELLHLYAQRQLK--PGFAFSPDNEWQRELEASFPYLETDDQL 619

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI ++  DM +   M R++ GDVG GKT VAL A   AV+ G Q  I+ P  +LAQQH+
Sbjct: 620  RAIAEVKADMERPIPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAILVPTTVLAQQHF 679

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +  +K      + VE+++       +   +  +A G+  IIIGTH L  + + +  L LV
Sbjct: 680  DTFRKRMAAFPVTVEMLSRFRSPKEQDGIVRDLARGKIDIIIGTHRLLSNDVVFRDLGLV 739

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L Q      VL +TATPIPRTL +   G  D+S I   P  R PI
Sbjct: 740  IVDEEQRFGVRHKERLKQLRAEVDVLTLTATPIPRTLHMALSGIRDLSVINTPPEDRLPI 799

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT ++P +    + E ++  L    + Y++  +++         V ER   L     + I
Sbjct: 800  KTYVVPADD-HLIQEVIRRELEREGQVYFVHNRVQSIY-----HVAERLRRLVPE--ARI 851

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG++++ + E VM  F  G   +L+ TT+IE G+DV +A+ III++A H+GLAQL+Q
Sbjct: 852  AVGHGQLAERNLERVMMDFFEGRYDVLVCTTIIESGLDVPNANTIIIDDATHYGLAQLYQ 911

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG   +   LLY+P  P++ ++  RL  ++   +   GF +A  DL+ R  G +
Sbjct: 912  LRGRVGRGATRAYAYLLYNPAAPMTSDARQRLEAIQEATELGAGFRVAMRDLEIRGAGNL 971

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            LG +QSG         +L+  LLE A +  K  + +
Sbjct: 972  LGSEQSGHI--AAVGFDLYSRLLEQAVQQLKRDVDE 1005


>gi|325132515|gb|EGC55208.1| transcription-repair coupling factor [Neisseria meningitidis M6190]
          Length = 1232

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 237/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 655  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 714

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 715  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 774

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                + ALE +A G   I+IGTH L QD+I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 775  SKATKAALEGLADGTVDIVIGTHKLVQDNIRFKSLGLVIIDEEHRFGVRQKEQLKRLRAN 834

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 835  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 893

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 894  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 946

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 947  RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 1006

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 1007 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 1064

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 1065 QAVRDLKK--GRQPDLDAPLGITTEIKLH 1091


>gi|284799822|ref|ZP_05984959.2| transcription-repair coupling factor [Neisseria subflava NJ9703]
 gi|284796912|gb|EFC52259.1| transcription-repair coupling factor [Neisseria subflava NJ9703]
          Length = 1164

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 236/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 587  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 646

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 647  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 706

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 707  SKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 766

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 767  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 825

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 826  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 878

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 879  RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 938

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 939  TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 996

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 997  QAVRDLKK--GRQPDLDAPLGITTEIKLH 1023


>gi|205371994|ref|ZP_03224812.1| transcription-repair coupling factor [Bacillus coahuilensis m4-4]
          Length = 1181

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 145/457 (31%), Positives = 241/457 (52%), Gaps = 17/457 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  +  + +A  +  L   ++    +G   N +G++ ++     P+  T+ Q 
Sbjct: 570  EWAKVKRKVESSVQDIADDLIKLYAEREAA--VGYAFNPDGEMQREFESLFPYQETEDQT 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQHY
Sbjct: 628  RSIQEIKRDMEKSRPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K+  Q+  + V +++    +  +   ++ +  G   I++GTH L    I Y  L L+
Sbjct: 688  ETMKERFQDFPVNVSLLSRFRTRKQQTDTIKGLKDGSVDIVVGTHRLLSKEIGYKDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 748  IIDEEQRFGVTHKEKIKQLKTNIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  L+   + +++  ++E+ +        +    L     + +
Sbjct: 808  QTYVLEYNG-ALVREAIERELAREGQVFFLYNRVEDIE-----RKADEIAMLVPE--ARV 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HGRM++ + ESV+ SF  G   +L+ TT+IE G+D+ +A+ +I+ +A+  GL+QL+Q
Sbjct: 860  VYAHGRMTENELESVILSFLEGEADVLVTTTIIETGVDIPNANTLIVHDADRMGLSQLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS  +  RL  +K       GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSNRVAYAYFTYRKDKVLSDVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            LG +Q G    +     L+  +L+ A ++ K +L +D
Sbjct: 980  LGAEQHGFIDSVGFD--LYSQMLKDAIEERKSVLKED 1014


>gi|219872109|ref|YP_002476484.1| transcription-repair coupling factor [Haemophilus parasuis SH0165]
 gi|219692313|gb|ACL33536.1| transcription-repair coupling factor [Haemophilus parasuis SH0165]
          Length = 1217

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/481 (33%), Positives = 250/481 (51%), Gaps = 21/481 (4%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    ++       +A ++  +  +++ +   G     +     +     PF 
Sbjct: 617  HKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKREAQ--KGFAFEYDRDAFVQFSNTFPFE 674

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T+ Q++AI  ++ DM     M R++ GDVG GKT VA+ A   A     Q  I+AP  +
Sbjct: 675  ETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAAMNHKQVAILAPTTL 734

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+E  K    N  I VE+++       +++ L ++A G+  I++GTH L Q+ +Q+
Sbjct: 735  LAQQHFENFKDRFANYPINVEVLSRFKTAKAQKEILAKVADGKVDILVGTHKLLQEDVQF 794

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+++DE+HRFGV+Q+ ++ Q      +L +TATPIPRTL +   G  D+S I   P
Sbjct: 795  KDLGLLVIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMALNGMRDLSIIASPP 854

Query: 453  AGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            A R  IKT +   +  D VI E +   +  G + Y++   +   +     +  ++   L 
Sbjct: 855  ARRLSIKTFVRQSD--DTVIKEAILREILRGGQVYYLHNDVATIE-----NTAQQLAELV 907

Query: 512  EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                + I I HG+M + + E VM  F +    LL+ +T+IE GIDV  A+ IIIE A+ F
Sbjct: 908  PE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKF 965

Query: 572  GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLK 626
            GLAQLHQLRGRVGR    +   +L  PP  L+K++  RL  +    N   GF++A  DL+
Sbjct: 966  GLAQLHQLRGRVGRSHHQAYAYMLTPPPKTLTKDAQQRLEAMSTIDNLGAGFVLATHDLE 1025

Query: 627  QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             R  GE+LG +QSG  + L     L+  LLE A K  +    ++P L  +  Q + I L 
Sbjct: 1026 IRGAGELLGSEQSGQIESLGFS--LYMELLENAVKALQE--GREPTLDEITQQQVDIELR 1081

Query: 687  L 687
            +
Sbjct: 1082 V 1082


>gi|167468531|ref|ZP_02333235.1| transcription-repair coupling factor [Yersinia pestis FV-1]
          Length = 776

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   ++       +A ++  +  ++  K   G     + +  Q   ++ PF  T  QE 
Sbjct: 178 WSRARQKAAEKVRDVAAELLDIYAQRAVK--SGFKFKHDREQYQLFCQSFPFETTPDQEQ 235

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 236 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNKQVAVLVPTTLLAQQHFD 295

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +       + +E+++       ++  LE+ A G+  I+IGTH L Q  + ++ L L+I
Sbjct: 296 NFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGTHKLLQSDLHWHDLGLLI 355

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 356 VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 415

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  + E +   +  G + Y++   +E     N   V ++   L     + I 
Sbjct: 416 TFVREYDSL-VIREAILREILRGGQVYYLYNDVE-----NIEKVTQKLAELVPE--ARIT 467

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M + D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+H GLAQLHQL
Sbjct: 468 IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHLGLAQLHQL 527

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL   P  +S ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 528 RGRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELL 587

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G  QSG    +     L+  LLE A    K    ++P L  +      I + +
Sbjct: 588 GEDQSGQMTTIGFS--LYMELLESAVDALKE--GREPSLEDLTSNQTEIEMRM 636


>gi|157961369|ref|YP_001501403.1| transcription-repair coupling factor [Shewanella pealeana ATCC
            700345]
 gi|157846369|gb|ABV86868.1| transcription-repair coupling factor [Shewanella pealeana ATCC
            700345]
          Length = 1157

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/501 (30%), Positives = 253/501 (50%), Gaps = 26/501 (5%)

Query: 193  LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            L+ + S     EA        K  +  W    ++ +     +A ++  +  R+Q +    
Sbjct: 536  LISRYSVGPDEEATLN-----KLGNESWAKAKKKAVEKIRDVAAELLDVYARRQARPGE- 589

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
                ++ +   +   + P+  T  QE+AI+ +L+DM     M R++ GDVG GKT VA+ 
Sbjct: 590  -ACRIDLEEYAQFANSFPYEETVDQETAIEAVLEDMRSPTAMDRLVCGDVGFGKTEVAMR 648

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A   AV  G Q  I+ P  +LAQQHYE  K    +    +E+++       + + ++ + 
Sbjct: 649  AAFVAVNDGKQVAILVPTTLLAQQHYENFKDRFADWPFKIEVMSRFKTAKEQTQVMKELL 708

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G+  I+IGTH L Q   ++  L L+++DE+HRFGV+Q+ K+        +L +TATPIP
Sbjct: 709  DGKVDIVIGTHKLLQSEAKFENLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIP 768

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   PA R  +KT +   +    + E L   +  G + Y++   +
Sbjct: 769  RTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDE-ATIREALLREILRGGQVYFLHNSV 827

Query: 493  EEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            E  +        +R   + E    + +   HG+M + + E VM  F +    +L+ TT+I
Sbjct: 828  ETIE--------KRAAEISELLPEARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTII 879

Query: 552  EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLS 609
            E GIDV  A+ I+IE A++FGLAQLHQLRGRVGR    +   L+   P  ++K++  RL 
Sbjct: 880  ETGIDVPSANTIVIERADNFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKSMTKDARKRLE 939

Query: 610  VLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
             +   ED   GF++A +DL+ R  GE+LG +QSG    +     L+  +LE A K  K  
Sbjct: 940  AIGALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKI--GFTLYMEMLEDAVKSLKQ- 996

Query: 667  LTQDPDLTSVRGQSIRILLYL 687
              ++P L  +      + L +
Sbjct: 997  -GKEPSLNQMLRHQCEVELRI 1016


>gi|300362407|ref|ZP_07058583.1| transcription-repair coupling factor [Lactobacillus gasseri JV-V03]
 gi|300353398|gb|EFJ69270.1| transcription-repair coupling factor [Lactobacillus gasseri JV-V03]
          Length = 1171

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 233/450 (51%), Gaps = 17/450 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
             EW    +   +  E +A  +  L  +++ +   G   + +  + ++     P+  T  
Sbjct: 561 SAEWAKTKKRVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQKEFEDAFPYPETPD 618

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  +I++I  DM     M R+L GDVG GKT VAL A   A+  G Q   +AP  ILAQQ
Sbjct: 619 QLRSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQ 678

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+E ++   +N  +   +++     A  ++ +E + +GQ  +++GTH L    +++  L 
Sbjct: 679 HFETMQDRFKNFPVNCALLSRFQTPAEVKEIIEGVKNGQIDMVVGTHRLLSKDVKFKDLG 738

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+IVDE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R 
Sbjct: 739 LLIVDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRY 798

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PI+T ++       V E +   +    + +++  +I++  +        R   L     +
Sbjct: 799 PIQTYVME-EMPSVVREAVLREMKRNGQVFFLHNRIDDIDKVVS-----RLEELIPE--A 850

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +I+ENA+H+GL+QL
Sbjct: 851 KIEYIHGRMSENQMEDIMYRFSRNEFDILVTTTIIETGVDMPNVNTMIVENADHYGLSQL 910

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY P   L++    RLS +++      GF IA  DL  R  G
Sbjct: 911 YQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGAG 970

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +LG +Q G    +     L+  +L+ A K
Sbjct: 971 NMLGKQQHGFIDSVGYD--LYAQMLDDAIK 998


>gi|268608427|ref|ZP_06142154.1| transcription-repair coupling factor [Ruminococcus flavefaciens FD-1]
          Length = 1160

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 145/487 (29%), Positives = 242/487 (49%), Gaps = 19/487 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW           + +A ++  L  +++  K +G     + +I +      P+  T  Q 
Sbjct: 561  EWQKTRNNVKHAVKDMAHELIALYAKRE--KSVGFAFYPDDEIQRDFEERFPYVETDDQL 618

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VAL A    V AG Q  I+AP  +LA QHY
Sbjct: 619  QSISEIKADMERARPMERLLCGDVGFGKTEVALRAAMKCVLAGKQCAILAPTTVLAWQHY 678

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +  ++  + VE+++       + + ++++  G+  I+IGTH + Q S+ +  L L 
Sbjct: 679  QTALRRFEHFPVKVELLSRYRSPKQQEEIIKKLKQGRIDILIGTHKIIQKSVVFKDLGLA 738

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K  +  T   VL+++ATPIPRTL +   G  D+S + E P  R P+
Sbjct: 739  IIDEEQRFGVAHKEKFKESFTGVDVLMLSATPIPRTLNMAMSGIRDMSVLEEPPQDRYPV 798

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T +I  N I  +++ +   L  G + Y+I  ++E  +         +   L     + I
Sbjct: 799  QTYVIEYN-IGTIVQAIVRELRRGGQVYYIHNRVETIQA-----CAAKLQQLLPE--ARI 850

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+     + +        +LI TT+IE G+DV + + +IIE+++ FGL+QL+Q
Sbjct: 851  AYAHGQMSEDQMSDIWEQLVEHEIDILICTTIIETGVDVPNVNTLIIEDSDRFGLSQLYQ 910

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR          Y     L++ +  RL+ ++       GF IA  DL+ R  G I
Sbjct: 911  LRGRVGRSNRRGYAYFTYQRDKVLTEVATKRLNAMREFTQFGSGFRIALRDLEIRGAGSI 970

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIAR-KDAKHILTQDPD-LTSVRGQSIRILLYLYQYN 691
            LG +Q G  + +     ++  LL  A  ++   I  + P+ L  ++  +     Y+   N
Sbjct: 971  LGGRQHGHMEAVGYD--MYLKLLSEAIAEEKGEIPEKIPECLVDIQIDAHIPETYISSLN 1028

Query: 692  EAFQFIR 698
            +     R
Sbjct: 1029 QRIDMYR 1035


>gi|294141531|ref|YP_003557509.1| transcription-repair coupling factor [Shewanella violacea DSS12]
 gi|293328000|dbj|BAJ02731.1| transcription-repair coupling factor [Shewanella violacea DSS12]
          Length = 1157

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/528 (29%), Positives = 262/528 (49%), Gaps = 31/528 (5%)

Query: 176  VEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN----PRKAKDF------EWTSPAR 225
            +E L    ++ E+++ +            A ++I      P +  +        W    +
Sbjct: 504  LETLDTGGLIAEYLKLEYAGGDKLYVPVSALHLISRYSVGPDEEANLNKLGNETWAKAKK 563

Query: 226  ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            + +     +A ++  +  R+Q +        ++ +   +   + PF  T  QE++I  +L
Sbjct: 564  KAVEKIRDVAAELLDVYARRQSRPGS--ACKIDEQEYAQFANSFPFEETVDQETSINAVL 621

Query: 286  QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
             DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQH+E  K   
Sbjct: 622  TDMCSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTLLAQQHFENFKDRF 681

Query: 346  QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
             +  + +E+I+       ++  ++ ++ G+  IIIGTH L      +  L L+++DE+HR
Sbjct: 682  ADWPVKIEVISRFKTAKEQKLIMDELSKGKVDIIIGTHKLLHSEGDFENLGLLVIDEEHR 741

Query: 406  FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            FGV+Q+ ++        +L +TATPIPRTL +   G  D+S I   PA R  +KT I   
Sbjct: 742  FGVRQKEQIKALRAHVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFIREY 801

Query: 466  NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGR 524
            +    + E L   +  G + Y++  ++E  +        +R   + E    + +   HG+
Sbjct: 802  DTT-TIREALLREILRGGQVYFLHNKVETIE--------KRAKEISELLPEARVVTAHGQ 852

Query: 525  MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
            M + D E VM  F +    +L+ TT+IE GIDV  A+ I+IE A++FGLAQLHQLRGRVG
Sbjct: 853  MRERDLERVMSDFYHQKFNVLVCTTIIETGIDVPSANTIVIERADNFGLAQLHQLRGRVG 912

Query: 585  RGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQS 639
            R    +   ++   P  ++ ++  RL  +   ED   GF++A +DL+ R  GE+LG +QS
Sbjct: 913  RSHHQAYAYMMTPHPKSITSDARKRLEAIGALEDLGAGFMLATQDLEIRGAGELLGDEQS 972

Query: 640  GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G    +     L+  +LE A K  K    ++P L+ +  +   I L +
Sbjct: 973  GHISKI--GFTLYMEMLEDAVKSLKE--GKEPSLSQMLRRQCEIELRI 1016


>gi|294636793|ref|ZP_06715130.1| transcription-repair coupling factor [Edwardsiella tarda ATCC
           23685]
 gi|291089984|gb|EFE22545.1| transcription-repair coupling factor [Edwardsiella tarda ATCC
           23685]
          Length = 847

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/473 (33%), Positives = 240/473 (50%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           WT   ++       +A ++  +   +  K   G     + +  Q   +  PF  T  QE 
Sbjct: 250 WTRARQKAAEKVRDVAAELLDIYAMRAAK--AGFAFRHDREAYQLFCQGFPFETTPDQEM 307

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQHY+
Sbjct: 308 AINAVLGDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVHNSKQVAVLVPTTLLAQQHYD 367

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  + +E+I+       + + L   A G+  I+IGTH L Q  + +  L L+I
Sbjct: 368 NFRDRFANWPVRIELISRFRSAKEQAQVLADTAEGKVDILIGTHKLLQTDVLWKDLGLLI 427

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+Q+ ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 428 VDEEHRFGVRQKERIKALRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRMAVK 487

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  V E +      G + Y++   ++       +   +R  +L     + IA
Sbjct: 488 TFVREYDSL-LVREAILRETLRGGQVYYLYNDVDSI-----QKAADRLATLVPE--ARIA 539

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 540 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 599

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL  PP  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 600 RGRVGRSYHQAYAYLLTPPPKAMTVDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 659

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G  QSG          L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 660 GDDQSGQM--ASVGFSLYMELLESAVDALKA--GREPSLEDLTSQQTDVELRM 708


>gi|227903169|ref|ZP_04020974.1| transcriptional repair coupling factor [Lactobacillus acidophilus
           ATCC 4796]
 gi|227868974|gb|EEJ76395.1| transcriptional repair coupling factor [Lactobacillus acidophilus
           ATCC 4796]
          Length = 1165

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 142/450 (31%), Positives = 238/450 (52%), Gaps = 19/450 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +   G   + +  + +K     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQRKFDDAFPYPETADQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R++ GDVG GKT VAL A   AV+   Q   + P  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAVQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  + + +++     A  ++ +E +  G+  +++GTH +    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNIAMLSRFQTPAESKEIIEGLKDGKIDLVVGTHRILSKDVEFKNLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +T ++   +I  V+ +     +    + +++  +I +  E      VE+   L  +  + 
Sbjct: 801 QTYVME--QIPSVVKDACLREMQRYGQVFYLHNRISDIDE-----TVEKLQQLIPN--AR 851

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+
Sbjct: 852 IASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLY 911

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G 
Sbjct: 912 QLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAGN 971

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +LG +Q G    +     L+  +L  A K+
Sbjct: 972 MLGAQQHGFIDSVGYD--LYSQMLSDAIKE 999


>gi|253998954|ref|YP_003051017.1| transcription-repair coupling factor [Methylovorus sp. SIP3-4]
 gi|253985633|gb|ACT50490.1| transcription-repair coupling factor [Methylovorus sp. SIP3-4]
          Length = 1138

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 153/473 (32%), Positives = 231/473 (48%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++ L      A ++  L  ++  +   G    +  +  +      PF  T  Q 
Sbjct: 546  QWEKAKKKALKQIRDTAAELLNLYAQRAAR--KGHAFTLTLQDYEAFAEGFPFEETPDQL 603

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI+ ++ DM     M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QHY
Sbjct: 604  SAIEAVISDMQSGRPMDRLVCGDVGFGKTEVALRAAFVAVMGGRQVAVLVPTTLLAEQHY 663

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                    +  I +  I+       + +A++ +  G   IIIGTH L Q  +++  L LV
Sbjct: 664  NNFADRFADWPIKIAEISRFRTAKEQAEAIKGLEDGNIDIIIGTHRLIQKDVKFKNLGLV 723

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+ +L        VL +TATPIPRTL +   G  + S IT  P  R  I
Sbjct: 724  ILDEEHRFGVRQKEQLKAMRAEVDVLTLTATPIPRTLSMAMEGLREFSVITTPPQKRLAI 783

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT     +    + E        G + Y++  +++           E+   +     + I
Sbjct: 784  KTFATHYSE-GIIREAAMREFKRGGQVYFLHNEVDTIFVMK-----EKLERILPE--ARI 835

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG++ + + E VM  F      LL+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 836  GIAHGQLRERELEHVMRDFYQQRFNLLLCTTIIETGIDVPTANTIIMNRADMFGLAQLHQ 895

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL  P   ++  +  RL  ++  ED   GF +A  DL+ R  GE+
Sbjct: 896  LRGRVGRSHHQAYAYLLTDPDRNITPQAQKRLDAIQLLEDLGAGFHLAMHDLEIRGAGEL 955

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG  QSG  + +     L+  +L  A K  K    ++PD+ +  G +  I L+
Sbjct: 956  LGDSQSGEMQEIGFS--LYSDMLNHAVKQLKA--GKEPDINAPLGVTTEINLH 1004


>gi|58336612|ref|YP_193197.1| transcriptional repair coupling factor [Lactobacillus acidophilus
           NCFM]
 gi|58253929|gb|AAV42166.1| transcriptional repair coupling factor [Lactobacillus acidophilus
           NCFM]
          Length = 1165

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 142/450 (31%), Positives = 238/450 (52%), Gaps = 19/450 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +   G   + +  + +K     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQRKFDDAFPYPETADQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R++ GDVG GKT VAL A   AV+   Q   + P  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAVQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  + + +++     A  ++ +E +  G+  +++GTH +    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNIAMLSRFQTPAESKEIIEGLKDGKIDLVVGTHRILSKDVEFKNLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +T ++   +I  V+ +     +    + +++  +I +  E      VE+   L  +  + 
Sbjct: 801 QTYVME--QIPSVVKDACLREMQRDGQVFYLHNRISDIDE-----TVEKLQQLIPN--AR 851

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+
Sbjct: 852 IASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLY 911

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G 
Sbjct: 912 QLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAGN 971

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +LG +Q G    +     L+  +L  A K+
Sbjct: 972 MLGAQQHGFIDSVGYD--LYSQMLSDAIKE 999


>gi|260584473|ref|ZP_05852220.1| transcription-repair coupling factor [Granulicatella elegans ATCC
            700633]
 gi|260157991|gb|EEW93060.1| transcription-repair coupling factor [Granulicatella elegans ATCC
            700633]
          Length = 1174

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 137/446 (30%), Positives = 238/446 (53%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+     E +A ++  L  ++  +   G   + +    ++     P+S T+ Q 
Sbjct: 568  EWAKTKRKVETKIEDIADELIELYAKRDAE--KGYAFSKDTVEQKEFEDAFPYSETQDQL 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I  DM +   M R+L GDVG GKT VA+ A+  A+  G QA ++ P  ILA+QHY
Sbjct: 626  RSIEEIKADMQKDKPMDRLLVGDVGYGKTEVAMRAVFKALMDGKQAAVLVPTTILAEQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +   +    + +++    +  +++ +E +  GQ  ++IGTH +    + +  L L+
Sbjct: 686  ENFVQRFADYPFKIGLLSRFRTKKEQQETIEGLQKGQVDVVIGTHRILSKDVNFLDLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P+ R P+
Sbjct: 746  VVDEEQRFGVKHKERLKQLKSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPSNRYPV 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++    I  + + ++  L+ G + +++  ++E  +        +    L     + +
Sbjct: 806  QTFVMEQQGI-TIKDGIERELARGGQVFYLYNRVETIE-----KKADELRQLVPE--ARV 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +IHG+MS+   E+++  F  G   +L+ TT+IE G+D+ + + + IENA+H GL+QL+Q
Sbjct: 858  GVIHGQMSETTLENILYQFIEGEYDVLVTTTIIETGVDIPNVNTLFIENADHMGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+   L+Y P   L++    RL  +++      GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSNRIAYAYLMYQPDKTLTEVGEKRLQAMRDFTELGSGFKIAMRDLSIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G    +     L+  +L  A
Sbjct: 978  LGKQQHGFIDSVGFD--LYSQMLSEA 1001


>gi|257455867|ref|ZP_05621086.1| transcription-repair coupling factor [Enhydrobacter aerosaccus SK60]
 gi|257446715|gb|EEV21739.1| transcription-repair coupling factor [Enhydrobacter aerosaccus SK60]
          Length = 1182

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 241/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     + L+    +A ++  +  R+  K  I  PI  +            F  T  Q +
Sbjct: 584  WDKAKAKALSQIHDVAAELLNVQARRDAKVGINFPI--DQIQYDLFASQFAFEETPDQAN 641

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ +  DM Q   M R++ GDVG GKT VA+ A   AV+AG Q  ++ P  +LA QH +
Sbjct: 642  AIEAVKFDMKQNKPMDRLVCGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHED 701

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                   +  I +E ++    +    K L  +A+GQ  I+IGTH + Q+ +++  L L+I
Sbjct: 702  NFLDRFADWPIRIESLSRFGTKKQHDKILADLANGQVDIVIGTHRILQEDVKFANLGLMI 761

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++    +   VL MTATPIPRTL +   G  ++S I   PA R  IK
Sbjct: 762  VDEEHRFGVRDKERIKAMQSDVDVLSMTATPIPRTLNMALSGMRNMSIIATPPARRLAIK 821

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++P +  + + E +   L  G + + +   +   +      + E    L     S +A
Sbjct: 822  TFVMPKSD-NLLKEAILRELLRGGQVFLLHNDVASIE-----RMAETVRELVPE--SRVA 873

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E +M SF +    +L+ TT+IE GID+ +A+ III  A+ FGLAQLHQL
Sbjct: 874  VAHGQMKERELEQIMQSFYHKKHNVLVCTTIIETGIDIPNANTIIINRADKFGLAQLHQL 933

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR    + C LL      L+ ++  RL  +        GF++A EDL+ R  GE+L
Sbjct: 934  RGRVGRSHHQAYCYLLVPSIKGLTSDAQKRLDAISRANTLGAGFMLASEDLEIRGAGELL 993

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG  + +     +   +L  A K  K    + PDL +    +  I L+L
Sbjct: 994  GKNQSGNMQAVGFNLYMD--MLNRATKAIKA--GKQPDLNTPLSLTSDINLHL 1042


>gi|261400667|ref|ZP_05986792.1| transcription-repair coupling factor [Neisseria lactamica ATCC 23970]
 gi|269209577|gb|EEZ76032.1| transcription-repair coupling factor [Neisseria lactamica ATCC 23970]
          Length = 1164

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/453 (33%), Positives = 238/453 (52%), Gaps = 17/453 (3%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  L  R+  +   G    +     Q       +  T+ Q +AI  +++D++Q   M R
Sbjct: 583  ELLNLYARRAAQ--SGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDR 640

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++
Sbjct: 641  LVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVAGLS 700

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                    + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +
Sbjct: 701  RFNNNKATKAALEGMADGTVDIVIGTHKLVQDDIRFKNLGLVIIDEEHRFGVRQKEQLKR 760

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                  +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E + 
Sbjct: 761  LRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVL 819

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              L  G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  
Sbjct: 820  RELKRGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRD 872

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F      +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL 
Sbjct: 873  FLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLT 932

Query: 597  HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
               ++K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+ 
Sbjct: 933  PEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYT 990

Query: 654  SLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             +L+ A +D K    + PDL +  G +  I L+
Sbjct: 991  EMLKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1021


>gi|238853544|ref|ZP_04643916.1| transcription-repair coupling factor [Lactobacillus gasseri 202-4]
 gi|238833840|gb|EEQ26105.1| transcription-repair coupling factor [Lactobacillus gasseri 202-4]
          Length = 1165

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 138/450 (30%), Positives = 232/450 (51%), Gaps = 17/450 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
             EW    +   +  E +A  +  L  +++ +   G   + +  + ++     P+  T  
Sbjct: 561 SAEWAKTKKRVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQKEFEDAFPYPETPD 618

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  +I++I  DM     M R+L GDVG GKT VAL A   A+  G Q   +AP  ILAQQ
Sbjct: 619 QLRSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQ 678

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+E ++   +N  +   +++     A  +  +E + +G+  +++GTH L    +++  L 
Sbjct: 679 HFETMQDRFKNFPVNCALLSRFQTPAEVKAIIEGVKNGKIDMVVGTHRLLSKDVKFKDLG 738

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+IVDE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R 
Sbjct: 739 LLIVDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRY 798

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PI+T ++       V E +   +    + +++  +I++  +        R   L     +
Sbjct: 799 PIQTYVME-EMPSVVREAVLREMKRNGQVFFLHNRIDDIDKVVS-----RLEELIPE--A 850

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +I+ENA+H+GL+QL
Sbjct: 851 KIEYIHGRMSENQMEDIMYRFSRNEFDILVTTTIIETGVDMPNVNTMIVENADHYGLSQL 910

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY P   L++    RLS +++      GF IA  DL  R  G
Sbjct: 911 YQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGAG 970

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +LG +Q G    +     L+  +L+ A K
Sbjct: 971 NMLGKQQHGFIDSVGYD--LYAQMLDDAIK 998


>gi|167623544|ref|YP_001673838.1| transcription-repair coupling factor [Shewanella halifaxensis
            HAW-EB4]
 gi|167353566|gb|ABZ76179.1| transcription-repair coupling factor [Shewanella halifaxensis
            HAW-EB4]
          Length = 1157

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/502 (30%), Positives = 254/502 (50%), Gaps = 26/502 (5%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
             L+ + S     EA        K  +  W    ++ +     +A ++  +  R+Q +   
Sbjct: 535  HLISRYSVGPDEEATLN-----KLGNETWAKAKKKAVEKIRDVAAELLDVYARRQARPGE 589

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                +++ +   +   + P+  T  QE++I  +L+DM     M R++ GDVG GKT VA+
Sbjct: 590  --ACHIDQEEYAQFANSFPYEETVDQETSINAVLEDMRSPTAMDRLVCGDVGFGKTEVAM 647

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A   AV  G Q  I+ P  +LAQQHYE  K    +    +E+++       + + ++ +
Sbjct: 648  RAAFVAVNDGKQVAILVPTTLLAQQHYENFKDRFADWPFKIEVMSRFKTAKEQTQVMKDL 707

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             +G+  I+IGTH L Q   ++  L L+++DE+HRFGV+Q+ K+        +L +TATPI
Sbjct: 708  LNGKVDIVIGTHKLLQSEAKFENLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPI 767

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            PRTL +   G  D+S I   PA R  +KT +   +    + E L   +  G + Y++   
Sbjct: 768  PRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDE-ATIREALLREILRGGQVYFLHNS 826

Query: 492  IEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +E  +        +R   + E    + +   HG+M + + E VM  F +    +L+ TT+
Sbjct: 827  VETIE--------KRAAEISELLPEARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTI 878

Query: 551  IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL 608
            IE GIDV  A+ I+IE A++FGLAQLHQLRGRVGR    +   L+   P  ++K++  RL
Sbjct: 879  IETGIDVPSANTIVIERADNFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTKDARKRL 938

Query: 609  SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
              +   ED   GF++A +DL+ R  GE+LG +QSG    +     L+  +LE A K  K 
Sbjct: 939  EAIGALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKI--GFTLYMEMLEDAVKSLKQ 996

Query: 666  ILTQDPDLTSVRGQSIRILLYL 687
               ++P L  +      + L +
Sbjct: 997  --GKEPSLDQMLRHQCEVELRI 1016


>gi|116628945|ref|YP_814117.1| transcription-repair coupling factor [Lactobacillus gasseri ATCC
           33323]
 gi|116094527|gb|ABJ59679.1| transcription-repair coupling factor [Lactobacillus gasseri ATCC
           33323]
          Length = 1165

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 138/450 (30%), Positives = 232/450 (51%), Gaps = 17/450 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
             EW    +   +  E +A  +  L  +++ +   G   + +  + ++     P+  T  
Sbjct: 561 SAEWAKTKKRVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQKEFEDAFPYPETPD 618

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  +I++I  DM     M R+L GDVG GKT VAL A   A+  G Q   +AP  ILAQQ
Sbjct: 619 QLRSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQ 678

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+E ++   +N  +   +++     A  +  +E + +G+  +++GTH L    +++  L 
Sbjct: 679 HFETMQDRFKNFPVNCALLSRFQTPAEVKAIIEGVKNGKIDMVVGTHRLLSKDVKFKDLG 738

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+IVDE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R 
Sbjct: 739 LLIVDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRY 798

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PI+T ++       V E +   +    + +++  +I++  +        R   L     +
Sbjct: 799 PIQTYVME-EMPSVVREAVLREMKRNGQVFFLHNRIDDIDKVVS-----RLEELIPE--A 850

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +I+ENA+H+GL+QL
Sbjct: 851 KIEYIHGRMSENQMEDIMYRFSRNEFDILVTTTIIETGVDMPNVNTMIVENADHYGLSQL 910

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           +QLRGR+GR   ++    LY P   L++    RLS +++      GF IA  DL  R  G
Sbjct: 911 YQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGAG 970

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            +LG +Q G    +     L+  +L+ A K
Sbjct: 971 NMLGKQQHGFIDSVGYD--LYAQMLDDAIK 998


>gi|323465804|gb|ADX69491.1| Transcriptional repair coupling factor [Lactobacillus helveticus
           H10]
          Length = 1165

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 238/450 (52%), Gaps = 19/450 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +   G   + +  + ++     P++ T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQKQFEDAFPYAETLDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I +DM +   M R++ GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSIKEIKEDMEKPKPMDRLVVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++     A  ++ +E +  G+  +++GTH L    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKEIIEGLKEGKIDLVVGTHRLLSKDVEFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +T ++   +I  V+ +     +    + +++  +I +  E      VE+   L  +  + 
Sbjct: 801 QTYVME--QIPSVVRDACLREMQRDGQVFYLHNRISDIDE-----TVEKLQQLIPN--AR 851

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+
Sbjct: 852 IASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLY 911

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G 
Sbjct: 912 QLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAGN 971

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +LG +Q G    +     L+  +L  A K+
Sbjct: 972 MLGAQQHGFIDSVGYD--LYSQMLSDAIKE 999


>gi|314937290|ref|ZP_07844632.1| transcription-repair coupling factor [Staphylococcus hominis subsp.
            hominis C80]
 gi|313654586|gb|EFS18336.1| transcription-repair coupling factor [Staphylococcus hominis subsp.
            hominis C80]
          Length = 1169

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/477 (33%), Positives = 247/477 (51%), Gaps = 22/477 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +  +G     +         + P+  T  Q 
Sbjct: 568  EWKKTKAKVQQSVEDIADELIALY--KEREMSVGYQYGEDTAEQHDFEMDFPYELTPDQA 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM ++  M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 626  KSIEEIKEDMEKERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++I+        R+  E +  G   II+GTH L    IQY  L L+
Sbjct: 686  ETLIERMQDFPVEIQLISRFRTAKEVRETKEGLKSGYVDIIVGTHKLLSKDIQYKDLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++    T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 746  IVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 806  QTYVLEQNS-NFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPE--ANI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF NG   +L+ TT+IE G+DV +A+ +IIE A+HFGL+QL+Q
Sbjct: 858  AVAHGQMTERDLEETMLSFINGEYDILVTTTIIETGVDVPNANTLIIEEADHFGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L   +  L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSSRIGYAYFLHSTNKVLTETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            LG +Q G    +     L+  +LE A  + + I  + PD   V      + L+L  Y
Sbjct: 978  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGITEEVPDAPDVE-----MELHLDAY 1027


>gi|3150215|emb|CAA19182.1| ATP-dependent DNA helicase [Mycobacterium leprae]
          Length = 592

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 189/570 (33%), Positives = 298/570 (52%), Gaps = 34/570 (5%)

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD 217
            +Y   T L        + + L  L  + + +  DL  K    S  EA   IH      D
Sbjct: 24  PIYPASTKLQSWDIYACVRQVLEVLDPVADPLPADLRAKHGLVSEDEALRAIHLAESESD 83

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ-KILRNIPFSPTKS 276
                 ARERL +DE +  Q AL+  R     E G            +++R +PF  T+ 
Sbjct: 84  ---RRRARERLTFDEAVGLQWALVTRRHGELSESGPSAPPRSDGLMAELMRRLPFELTEG 140

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q      +   ++    + R+LQG+VGSGKT+VA++AM   ++AG Q V++AP  +LA Q
Sbjct: 141 QREVRDVLSDGLAATRPLNRLLQGEVGSGKTIVAVLAMLQMIDAGYQCVLLAPTEVLAAQ 200

Query: 337 HYEFIKKYTQNTQI-----------IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           H   I+       +            V ++TG+M  A ++K    I  GQ  I+IGTHAL
Sbjct: 201 HLLSIRDVLGPLGMGCQLGGAENATQVALLTGSMTMAQKKKVRADIFSGQTGIVIGTHAL 260

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGD 442
            QD+I+++ L +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD
Sbjct: 261 LQDAIEFHNLGMVVVDEQHRFGVEQRDQLRTKARTGIMPHLLVMTATPIPRTVALTVYGD 320

Query: 443 IDISKITEKPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +++S + E P GR+PI + +I +      +D   +R+   ++ G++AY + P+I+E ++ 
Sbjct: 321 LEMSTLRELPRGRQPITSNVIFVKDKPGWLDRAWQRILEEVAAGRQAYVVAPRIDETEDP 380

Query: 499 N----FRSVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     E  + L+    S       +A++HGR+S  +K++ M +F+ G   +L+ T
Sbjct: 381 QKGGQNSRPSETADGLYARLRSGELANVRLALMHGRLSADEKDAAMMAFRAGEIDVLVCT 440

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            VIEVG+DV +A+I+++ +A+ FG++QLHQLRGR+GRG   S C+L         +  RL
Sbjct: 441 NVIEVGVDVPNATIMLVMDADRFGISQLHQLRGRIGRGTHPSLCLLASWVSPGSPAGRRL 500

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHIL 667
             +  T DGF +A+ DLK+R+EG++LG  QSG      +     H   +E AR       
Sbjct: 501 CAVAETMDGFALADLDLKERREGDVLGRNQSGKAITLRMLSLAEHQVFIEAARDFCTRAY 560

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
            + P L       +  L   +   +  +++
Sbjct: 561 -EYPHLGLAPHPGLADLAARFIDTDRIEYL 589


>gi|218133743|ref|ZP_03462547.1| hypothetical protein BACPEC_01612 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991118|gb|EEC57124.1| hypothetical protein BACPEC_01612 [Bacteroides pectinophilus ATCC
           43243]
          Length = 494

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 164/480 (34%), Positives = 268/480 (55%), Gaps = 25/480 (5%)

Query: 138 MVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK 197
           M  P             +++ +Y L  GLS  +  K + +AL    ++PE +  +L +  
Sbjct: 1   MEQPVLYTMEGYSSQIGIMQPIYPLTRGLSNKIVSKAMQQALDIKELVPELLPAELRRSN 60

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
               I  A   IH P+   D+E     R+RL +DE     + +  M++   ++  +    
Sbjct: 61  ELAEINFAMRAIHFPKDMNDYEAA---RKRLVFDEFFFFMLNVRRMKENNSRQPNLSRIA 117

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +     + ++ +P+  T +Q+   +++  DM+ +  M R++QGDVGSGKT++A++A+   
Sbjct: 118 DDARTDEFIKKLPYELTNAQKRTWQEVSSDMNGERLMNRLVQGDVGSGKTIIAVLALMNT 177

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII--VEIITGNMPQAHRRKALERIAHGQ 375
           V AG Q  +M P  +LA+Q Y+      +   I   V ++ G+M  + ++K  +RIA G+
Sbjct: 178 VYAGYQGAMMVPTEVLARQQYDDTCAMFEKYGININVSLLIGSMTASAKKKERQRIASGE 237

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           A I+IGTHAL Q  ++Y  L LV+ DEQHRFGV QR  LTQK ++ H L+M+ATPIPRTL
Sbjct: 238 AGIVIGTHALIQAGVEYANLGLVVTDEQHRFGVHQRESLTQKGSSVHTLVMSATPIPRTL 297

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +   GD+DIS + E P+ R PIK  ++  +        ++  +  G +AY ICP +E +
Sbjct: 298 AIIIYGDLDISVMNELPSSRLPIKNAVVGTDYRPNAYRFIENQVQAGHQAYVICPMVEAR 357

Query: 496 KESNF------------------RSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMD 535
           ++ +                    +VV+    L ++  SS  +  +HG+M    K+ +M+
Sbjct: 358 EDGDVMEDGRGDTFANTNMHATLENVVDYTTMLKKNLPSSINVEYLHGKMKPAVKDEIME 417

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +G  ++L++TTVIEVG++V +A++++IENA+ FGLAQLHQLRGRVGRG   S CI +
Sbjct: 418 RFHSGQTQVLVSTTVIEVGVNVPNATVMLIENADRFGLAQLHQLRGRVGRGAYQSYCIFV 477


>gi|148543499|ref|YP_001270869.1| transcription-repair coupling factor [Lactobacillus reuteri DSM
            20016]
 gi|227363648|ref|ZP_03847762.1| transcription-repair coupling factor [Lactobacillus reuteri MM2-3]
 gi|325681843|ref|ZP_08161362.1| transcription-repair coupling factor [Lactobacillus reuteri MM4-1A]
 gi|148530533|gb|ABQ82532.1| transcription-repair coupling factor [Lactobacillus reuteri DSM
            20016]
 gi|227071317|gb|EEI09626.1| transcription-repair coupling factor [Lactobacillus reuteri MM2-3]
 gi|324978934|gb|EGC15882.1| transcription-repair coupling factor [Lactobacillus reuteri MM4-1A]
          Length = 1179

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 235/447 (52%), Gaps = 19/447 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R   +  E +A ++  L  +++ +   G     +  + ++   N P++ T+ Q 
Sbjct: 572  EWAKTKRRVSSKIEDIADELVDLYAKREAE--KGYAFPKDDYLQKQFDANFPYNETRDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A+  AV  G Q   + P  +LAQQHY
Sbjct: 630  RSIDEIKEDMEKPKPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTVLAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              + +  +   I + +++        ++    +  G   +++GTH +    +++  L L+
Sbjct: 690  NTLMRRFEGFPINIALMSRFKTPKELKETEAGLKDGSVDVVVGTHRILSKDVEFKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ LG  D+S +   PAGR PI
Sbjct: 750  IVDEEQRFGVKHKEKLKQLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPI 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T ++  N    + + +   +  G + Y++  ++ + +        E    L E    + 
Sbjct: 810  QTYVMEQNS-SAIRDGIIREMQRGGQVYYLHNRVHDIE--------ETVAWLQELVPEAR 860

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I  I+G+MS+ + E+V+  F  G   +L+ T++IE G+D+ +A+ + +ENA+  GLAQL+
Sbjct: 861  IGYINGQMSENELETVLYEFIQGNYDVLVTTSIIETGVDIPNANTLFVENADRMGLAQLY 920

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            Q+RGR+GR   ++    +Y P   L++    RL+ +++      GF IA  DL  R  G 
Sbjct: 921  QIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLAIRGAGN 980

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +LG +Q G    +     L+ ++L  A
Sbjct: 981  LLGKQQHGFIDSVGYD--LYSAMLSDA 1005


>gi|184152907|ref|YP_001841248.1| transcription-repair coupling factor [Lactobacillus reuteri JCM 1112]
 gi|183224251|dbj|BAG24768.1| transcription-repair coupling factor [Lactobacillus reuteri JCM 1112]
          Length = 1178

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 235/447 (52%), Gaps = 19/447 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R   +  E +A ++  L  +++ +   G     +  + ++   N P++ T+ Q 
Sbjct: 571  EWAKTKRRVSSKIEDIADELVDLYAKREAE--KGYAFPKDDYLQKQFDANFPYNETRDQL 628

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A+  AV  G Q   + P  +LAQQHY
Sbjct: 629  RSIDEIKEDMEKPKPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTVLAQQHY 688

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              + +  +   I + +++        ++    +  G   +++GTH +    +++  L L+
Sbjct: 689  NTLMRRFEGFPINIALMSRFKTPKELKETEAGLKDGSVDVVVGTHRILSKDVEFKDLGLL 748

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ LG  D+S +   PAGR PI
Sbjct: 749  IVDEEQRFGVKHKEKLKQLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPI 808

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T ++  N    + + +   +  G + Y++  ++ + +        E    L E    + 
Sbjct: 809  QTYVMEQNS-SAIRDGIIREMQRGGQVYYLHNRVHDIE--------ETVAWLQELVPEAR 859

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I  I+G+MS+ + E+V+  F  G   +L+ T++IE G+D+ +A+ + +ENA+  GLAQL+
Sbjct: 860  IGYINGQMSENELETVLYEFIQGNYDVLVTTSIIETGVDIPNANTLFVENADRMGLAQLY 919

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            Q+RGR+GR   ++    +Y P   L++    RL+ +++      GF IA  DL  R  G 
Sbjct: 920  QIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLAIRGAGN 979

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +LG +Q G    +     L+ ++L  A
Sbjct: 980  LLGKQQHGFIDSVGYD--LYSAMLSDA 1004


>gi|304315715|ref|YP_003850860.1| transcription-repair coupling factor [Thermoanaerobacterium
            thermosaccharolyticum DSM 571]
 gi|302777217|gb|ADL67776.1| transcription-repair coupling factor [Thermoanaerobacterium
            thermosaccharolyticum DSM 571]
          Length = 1166

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/553 (27%), Positives = 268/553 (48%), Gaps = 40/553 (7%)

Query: 130  KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP-TGLSVDLFKKIIVEALSRLPVLP-E 187
             +++N   +    Y+ H +        E +  +   G++ D  K  I  A      +P +
Sbjct: 492  NRIRNFTELTVGSYVVHVNY--GIGKYEGIEKITFDGVTKDYLK--IKYAGDDKLFIPVD 547

Query: 188  WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMR 244
             +  DL+QK   P           P K       EW+   ++     E LA  +  L  +
Sbjct: 548  QL--DLIQKYIGPEDK--------PPKLNKLGGNEWSKLKKKAKKAVEDLAKDLIKLYAK 597

Query: 245  KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            +Q     G   + +    +      P+  T+ Q   I++I +DM     M R+L GDVG 
Sbjct: 598  RQ--TMKGYAFSKDTPWQKDFEERFPYEETEDQLRCIEEIKRDMESDKPMDRLLCGDVGY 655

Query: 305  GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
            GKT VAL A   AV  G Q   + P  ILA+QHY    +  ++  + +E+++       +
Sbjct: 656  GKTEVALRAAFKAVADGKQVAFLCPTTILAEQHYNNFVQRFKDFPVKIEMLSRFRSYKEQ 715

Query: 365  RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
             + ++ +A G   I++GTH + Q+ +++  L L+I+DE+ RFGV+ + K+ +      VL
Sbjct: 716  SQIIKSLAEGTIDILVGTHKILQNDVKFKDLGLLIIDEEQRFGVKHKEKIKKLKENIDVL 775

Query: 425  LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             ++ATPIPRTL ++ +G  D+S I   P  R P++T ++  N  + + + +   L  G +
Sbjct: 776  SLSATPIPRTLHMSLIGIRDMSVIENPPEDRYPVQTYVVEFNE-ELIRDAILRELGRGGQ 834

Query: 485  AYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTC 542
             Y++  +I         + +ER  S+ +     + +A+ HG+M +   E++M  F NG  
Sbjct: 835  VYFVYNRI---------NGIERMASIIKELVPSARVAVAHGQMDEGKLENIMIGFLNGDY 885

Query: 543  KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--L 600
             +L+ TT+IE G+D+ + + II+ +++  GL+QL+QLRGRVGR   ++     Y     +
Sbjct: 886  DILVCTTIIETGLDIPNVNTIIVYDSDKMGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVI 945

Query: 601  SKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            ++ +  RL  +K       GF IA  DL+ R  G +LG +Q G    +     ++  LL+
Sbjct: 946  TEVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHGHIDAIGYD--MYLRLLD 1003

Query: 658  IARKDAKHILTQD 670
             A K  K  +  +
Sbjct: 1004 EAIKGLKGEVEDE 1016


>gi|261377774|ref|ZP_05982347.1| transcription-repair coupling factor [Neisseria cinerea ATCC 14685]
 gi|269146063|gb|EEZ72481.1| transcription-repair coupling factor [Neisseria cinerea ATCC 14685]
          Length = 1134

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 236/449 (52%), Gaps = 15/449 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 557 LNLYAQRAAQSGHKFEINEMDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 616

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 617 DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 676

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 677 SKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 736

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 737 VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 795

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 796 RGGQVFFLHNEVDTIE-----NMRERLKTLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 848

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 849 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 908

Query: 601 SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 909 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 966

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLY 686
            A +D K    + PDL +  G +  I L+
Sbjct: 967 QAVRDLKK--GRQPDLDAPLGITTEIKLH 993


>gi|199598792|ref|ZP_03212204.1| Transcription-repair coupling factor (superfamily II helicase)
            [Lactobacillus rhamnosus HN001]
 gi|199590297|gb|EDY98391.1| Transcription-repair coupling factor (superfamily II helicase)
            [Lactobacillus rhamnosus HN001]
          Length = 1175

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 242/453 (53%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A ++  L  +++ +   G     +  + QK     P+  T  Q 
Sbjct: 567  EWQKTKRKVAARIEDIADELIDLYAKREAE--KGYAFGPDDDLQQKFEDEFPYPETPDQL 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + K+I +DM +   M R+L GDVG GKT VAL A   AV+ G Q  I+ P  ILAQQH+
Sbjct: 625  RSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPTTILAQQHF 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +K    +  + + +++        +  ++ + +G   I++GTH L    + +  L L+
Sbjct: 685  DTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + ++ Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 745  VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  +  G + +++  ++E+ + +  +        L     +SI
Sbjct: 805  QTFVMEQN-PGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ-----LEELVPD--ASI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+V+  F +G   +L+ TT+IE G+D+ +A+ +IIENA+H+GL+QL+Q
Sbjct: 857  GYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++    +Y P   L++ +  RL  +K+      GF IA  DL  R  G +
Sbjct: 917  LRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +L+ A    + +
Sbjct: 977  LGKQQHGFIDSVGYD--LYTQMLQEAVNKRRGL 1007


>gi|117621017|ref|YP_856534.1| transcription-repair coupling factor [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
 gi|117562424|gb|ABK39372.1| transcription-repair coupling factor [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
          Length = 1154

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/485 (32%), Positives = 236/485 (48%), Gaps = 21/485 (4%)

Query: 210  HNPRKAK--DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
             NP   K     W    R+       +A ++  +   +  +         + +  ++   
Sbjct: 544  DNPPSHKLGGEAWVKARRKAAEKVRDVAAELLDVYAMRAARHG--FAFKHDREAYRQFAA 601

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
              PF  T  Q +AI  +L DM Q   M R++ GDVG GKT VA+ A   AV  G Q  ++
Sbjct: 602  GFPFEETDDQLNAINAVLGDMCQAKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAVL 661

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +LAQQHY+  +    N  + VE+++       +   ++ +A G+  IIIGTH L  
Sbjct: 662  VPTTLLAQQHYDNFRDRFANWPVRVEVLSRFRSAKEQTAVMKELAEGKVDIIIGTHKLLG 721

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              + +  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 722  AELTFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMRDLSI 781

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
            I   PA R  IKT +          E +   L  G + Y++   +E  +           
Sbjct: 782  IATPPAKRLAIKTFV-RQQEPAVTREAVLRELKRGGQVYYLHNDVESIE-----KCAADL 835

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              L     + I I HG+M + + E VM  F +    LL+ TT+IE GIDV  A+ II++ 
Sbjct: 836  AELVPE--ARIGIAHGQMRERELERVMSDFYHQRFNLLVCTTIIETGIDVPSANTIIMDR 893

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
            A+H GLAQLHQLRGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A 
Sbjct: 894  ADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKLMTKDAAKRLEAIASLEDLGAGFALAT 953

Query: 623  EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
             DL+ R  GE+LG  QSG  +       L+  +LE A +  K    ++P L  +  Q   
Sbjct: 954  HDLEIRGAGELLGDDQSGQIE--SVGFTLYMEMLEQAVEALKS--GKEPSLEQLMSQHTE 1009

Query: 683  ILLYL 687
            + L L
Sbjct: 1010 VELRL 1014


>gi|326405611|gb|ADZ62682.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis CV56]
          Length = 1161

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/451 (31%), Positives = 235/451 (52%), Gaps = 17/451 (3%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  W           E ++  +  L   +Q K   G   + +    ++      +  
Sbjct: 552 KLNDGRWRKTMSYVSKQVEDISDDLIKLYAERQAK--KGFAFSPDDTSQEEFDSGFSYVE 609

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I +I  DM  +  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  +L
Sbjct: 610 TEDQMRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQVAVLVPTTVL 669

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH+    +   N  + VE+++    +  + + L ++  G+  +IIGTH L    ++++
Sbjct: 670 AEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGRVDLIIGTHRLLSKDVEFF 729

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ + +L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 730 DLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 789

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V + +   +S G + Y++  +++  ++   +        L   
Sbjct: 790 NRYPVQTYVMETN-YGVVRDAVLREISRGGQVYYVYNRVDTIEQKVSQ-----LEELIPE 843

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             + I  IHG+M+++  E+ + +F  G   +L+ATT+IE G+D+ +A+ + IENA+  GL
Sbjct: 844 --ARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNANTLFIENADMMGL 901

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQR 628
           +QL+QLRGRVGR   ++   L+Y P   LS+ S  RL  +K       GF IA  DL  R
Sbjct: 902 SQLYQLRGRVGRSNRVAYAYLMYRPEKILSEVSEKRLEAIKGFTELGSGFKIAMRDLSIR 961

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG    +     L+  LLE A
Sbjct: 962 GAGNLLGSEQSGFIDSVGFD--LYSQLLEEA 990


>gi|261346027|ref|ZP_05973671.1| transcription-repair coupling factor [Providencia rustigianii DSM
            4541]
 gi|282565913|gb|EFB71448.1| transcription-repair coupling factor [Providencia rustigianii DSM
            4541]
          Length = 1148

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 157/496 (31%), Positives = 241/496 (48%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S        + P  K     W    ++       +A ++  +  ++  K   G    
Sbjct: 526  HLISRYAGGADENAPLHKLGSDSWGRARQKAAERVRDVAAELLDIYAQRAAK--AGFAFK 583

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             + +  Q+     PF  T  QE AI  +L DM Q   M R++ GDVG GKT VA+ A   
Sbjct: 584  HDKQQYQEFCHGFPFETTADQEMAINAVLSDMCQPIAMDRLVCGDVGFGKTEVAMRAAFL 643

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A+    Q  ++ P  +LAQQH++  +    N  + +E+++       +++ +   A G+ 
Sbjct: 644  AISNNKQVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRTAKEQQQIISDTAEGKV 703

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L Q+ I +  L L++VDE+HRFGV+ + ++        +L +TATPIPRTL 
Sbjct: 704  DILIGTHKLLQNDIHWKDLGLLVVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLN 763

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   PA R  +KT +   + +  V E +      G + Y++   +E   
Sbjct: 764  MAMSGMRDLSIIATPPARRLAVKTFVRQYDDL-IVREAILRETLRGGQVYYLYNDVE--- 819

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
              N      R  +L     +   + HG+M + + E VM  F +    +LI TT+IE GID
Sbjct: 820  --NIEKAKARLEALVPE--ARFVVGHGQMRERELERVMTDFHHQRFNVLICTTIIETGID 875

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL   P  ++ ++  RL  + + 
Sbjct: 876  IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTTDAQKRLEAISSL 935

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG  QSG    +     L+  LLE A    K    ++P
Sbjct: 936  EDLGAGFALATHDLEIRGAGELLGDDQSGQMTTI--GFTLYMELLESAVDALKE--GREP 991

Query: 672  DLTSVRGQSIRILLYL 687
             L  +  Q   I L +
Sbjct: 992  SLEDLTSQQTEIELRM 1007


>gi|310829353|ref|YP_003961710.1| transcription-repair coupling factor [Eubacterium limosum KIST612]
 gi|308741087|gb|ADO38747.1| transcription-repair coupling factor [Eubacterium limosum KIST612]
          Length = 1140

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 157/479 (32%), Positives = 251/479 (52%), Gaps = 28/479 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     E +A ++  L  +++     G   + +    ++   + P+  T+ Q 
Sbjct: 546  DWQKAKNKAQKAVEDMADELIALYAKRRS--MKGYAFSPDTSWQKEFEDDFPYIETEDQL 603

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              +++I  DM  +  M R+L GDVG GKT VAL A   AV  G Q  ++ P  ILAQQHY
Sbjct: 604  RCVEEIKADMESEIPMDRLLCGDVGYGKTEVALRAAFKAVMEGKQVAMLVPTTILAQQHY 663

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              + +  +   I VE+I+       ++K L  +A G+  +IIGTH L    +Q+  L L+
Sbjct: 664  NTVLERFRKYPISVEVISRFRTSGQQKKILGDLALGKLDMIIGTHRLLSQDVQFKDLGLL 723

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + K+ Q      VL ++ATPIPRTL ++  G  D+S I E P GR+P+
Sbjct: 724  IIDEEQRFGVRSKEKIKQLKQNVDVLTLSATPIPRTLHMSMTGVRDMSVIEEPPEGRRPV 783

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + + +   L  G + Y++  ++ +  E           SL     + I
Sbjct: 784  QTYVMAYNPL-IIQDAINRELGRGGQVYYVHNRVHDIHEVAID-----VQSLVPD--ARI 835

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HGRMS  + E +M  F N    +L+ TT++E G+DV +A+ +II+  +HFGL+QL+Q
Sbjct: 836  VVAHGRMSGSELEDIMVDFLNHDFDILVTTTIVESGLDVKNANTMIIDEGDHFGLSQLYQ 895

Query: 579  LRGRVGRGEEISSCILLYHPP-LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            LRGRVGR +  +   + +    L++ +  RL  +K+      GF +A  DL+ R  G IL
Sbjct: 896  LRGRVGRSDAQAYAYVTHKKEILTEVAQKRLKAIKDFTAFGSGFKVAMRDLEIRGAGNIL 955

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIA---RKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            G +QSG   F I   EL+  +LE A   R D   + T++P         IRI L +  Y
Sbjct: 956  GAEQSGHL-FKIG-YELYCRILEEAISKRMDGVEVETEEP---------IRINLDIDGY 1003


>gi|229551616|ref|ZP_04440341.1| transcription-repair coupling factor [Lactobacillus rhamnosus LMS2-1]
 gi|229315020|gb|EEN80993.1| transcription-repair coupling factor [Lactobacillus rhamnosus LMS2-1]
          Length = 1182

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 242/453 (53%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A ++  L  +++ +   G     +  + QK     P+  T  Q 
Sbjct: 574  EWQKTKRKVAARIEDIADELIDLYAKREAE--KGYAFGPDDDLQQKFEDEFPYPETPDQL 631

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + K+I +DM +   M R+L GDVG GKT VAL A   AV+ G Q  I+ P  ILAQQH+
Sbjct: 632  RSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPTTILAQQHF 691

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +K    +  + + +++        +  ++ + +G   I++GTH L    + +  L L+
Sbjct: 692  DTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 751

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + ++ Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 752  VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 811

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  +  G + +++  ++E+ + +  +        L     +SI
Sbjct: 812  QTFVMEQN-PGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ-----LEELVPD--ASI 863

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+V+  F +G   +L+ TT+IE G+D+ +A+ +IIENA+H+GL+QL+Q
Sbjct: 864  GYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQ 923

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++    +Y P   L++ +  RL  +K+      GF IA  DL  R  G +
Sbjct: 924  LRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 983

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +L+ A    + +
Sbjct: 984  LGKQQHGFIDSVGYD--LYTQMLQEAVNKRRGL 1014


>gi|254235976|ref|ZP_04929299.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
            C3719]
 gi|126167907|gb|EAZ53418.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
            C3719]
          Length = 1148

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/473 (31%), Positives = 236/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q+S
Sbjct: 551  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--FAFKDPQADYATFSAGFPFEETPDQQS 608

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ ++ DM     M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQHY 
Sbjct: 609  AIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVLVPTTLLAQQHYN 668

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A      G+  I+IGTH L Q+ +++  L LV+
Sbjct: 669  SFRDRFADWPVSVEVMSRFKSAKEVENAAREFPPGKIDILIGTHKLLQEDVKFANLGLVV 728

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 729  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 788

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++   +   + E L   L  G + Y++  +++  ++            L     + I 
Sbjct: 789  TFVME-QQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARD-----LAELVPE--ARIG 840

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+IE A+ FGLAQLHQL
Sbjct: 841  IGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTILIERADKFGLAQLHQL 900

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + N +D   GF++A  DL+ R  GE+L
Sbjct: 901  RGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGELL 960

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    + L +
Sbjct: 961  GDGQSGQI--QAVGFTLYMEMLERAVKAIRK--GEQPNLEQPLGGGPEVNLRV 1009


>gi|42526796|ref|NP_971894.1| transcription-repair coupling factor [Treponema denticola ATCC 35405]
 gi|41817111|gb|AAS11805.1| transcription-repair coupling factor [Treponema denticola ATCC 35405]
          Length = 1155

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 147/450 (32%), Positives = 241/450 (53%), Gaps = 17/450 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W +   +     E +A ++  L  ++  K   G     + +         P+  T  Q +
Sbjct: 565  WENRKNKVKKSVEDIAAKLIDLYSKR--KASTGFAFQKDDEWQTAFEAAFPYEETDDQLT 622

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I ++ +DM +   M R++ GDVG GKT VA+ A   AV +G Q   ++P  IL +QH+E
Sbjct: 623  CIAEVKEDMEKPVPMDRLICGDVGYGKTEVAMRAAFKAVMSGKQVAFLSPTTILTEQHFE 682

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             + K  +N  + +  ++  +P+  ++K LE++  G+  I+IGTH + Q  + +  L L+I
Sbjct: 683  TLDKRFKNFPVKLARLSRFVPKGEQKKVLEKLKKGEVDILIGTHRIIQKDVVFKDLGLMI 742

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV+ + +L Q       L ++ATPIPRTL ++ L   D+S I   P  RKP++
Sbjct: 743  VDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLHMSLLKIRDMSVIATPPQNRKPVE 802

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            TVI   N  ++V E ++     G + +++  ++E   E+ F        SL       I 
Sbjct: 803  TVIAEFN-AEKVAEVIRRESERGGQVFYLHNRVESLDETLF-----MLQSLLPEIM--IE 854

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              HG+MS    E + + F  G  ++LIATT+IE GID+ +A+ III+ A+ +G++QL+QL
Sbjct: 855  TAHGQMSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTIIIDRADMYGVSQLYQL 914

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR ++ +   LLY     LS+ +  RL V+ +      GF IA +D++ R  G +L
Sbjct: 915  RGRVGRSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLL 974

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            G +QSG         +L+  LL+ A +  K
Sbjct: 975  GREQSG--DIYSVGFDLYLRLLDEAVQKLK 1002


>gi|313201057|ref|YP_004039715.1| transcription-repair coupling factor [Methylovorus sp. MP688]
 gi|312440373|gb|ADQ84479.1| transcription-repair coupling factor [Methylovorus sp. MP688]
          Length = 1139

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 153/473 (32%), Positives = 231/473 (48%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++ L      A ++  L  ++  +   G    +  +  +      PF  T  Q 
Sbjct: 546  QWEKAKKKALKQIRDTAAELLNLYAQRAAR--KGHAFTLTLQDYEAFAEGFPFEETPDQL 603

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI+ ++ DM     M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QHY
Sbjct: 604  SAIEAVISDMQSGRPMDRLVCGDVGFGKTEVALRAAFVAVMGGRQVAVLVPTTLLAEQHY 663

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                    +  I +  I+       + +A++ +  G   IIIGTH L Q  +++  L LV
Sbjct: 664  NNFADRFADWPIKIAEISRFRTAKEQAEAIKGLEDGNIDIIIGTHRLIQKDVKFKNLGLV 723

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+ +L        VL +TATPIPRTL +   G  + S IT  P  R  I
Sbjct: 724  ILDEEHRFGVRQKEQLKAMRAEVDVLTLTATPIPRTLSMAMEGLREFSVITTPPQKRLAI 783

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT     +    + E        G + Y++  +++           E+   +     + I
Sbjct: 784  KTFATHYSE-GIIREAAMREFKRGGQVYFLHNEVDTIFVMK-----EKLERILPE--ARI 835

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG++ + + E VM  F      LL+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 836  GIAHGQLRERELEHVMRDFYQQRFNLLLCTTIIETGIDVPTANTIIMNRADMFGLAQLHQ 895

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL  P   ++  +  RL  ++  ED   GF +A  DL+ R  GE+
Sbjct: 896  LRGRVGRSHHQAYAYLLTDPDRNITPQAQKRLDAIQLLEDLGAGFHLAMHDLEIRGAGEL 955

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG  QSG  + +     L+  +L  A K  K    ++PD+ +  G +  I L+
Sbjct: 956  LGDSQSGEMQEIGFS--LYSDMLNHAVKQLKA--GKEPDINAPLGVTTEINLH 1004


>gi|116513512|ref|YP_812418.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116092827|gb|ABJ57980.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 1158

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/449 (31%), Positives = 229/449 (51%), Gaps = 17/449 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    +   A  E +A  +  L  +++ +   G   + +G          P+ PT  Q 
Sbjct: 557 EWAKTKKRVAARVEDIADDLIELYAKREAE--KGFAFSPDGSDQAAFEAAFPYEPTPDQL 614

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A  +I  DM +   M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQHY
Sbjct: 615 RATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHY 674

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + IK   +   + +   +    QA  +K +  +  G   +++GTH +    +Q+  L L+
Sbjct: 675 QTIKDRFKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQFKDLGLL 734

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + KL Q  T   VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 735 IIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPI 794

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++       V E  +  +  G + +++  ++ + +E      V R   L     + I
Sbjct: 795 QTYVLE-QLPGTVKEACQREMQRGGQVFYLHNRVGDIEE-----TVARLEQLLPE--ARI 846

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HG+MS+   E ++  F +    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+Q
Sbjct: 847 AYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLYQ 906

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGR+GR   ++    LY P   L++    RL  +++  +   GF IA  DL  R  G +
Sbjct: 907 LRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDLSIRGAGNM 966

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           LG +Q G    +     L+  +L  A K+
Sbjct: 967 LGAQQHGFIDSVGYD--LYSQMLADAIKE 993


>gi|225575737|ref|ZP_03784347.1| hypothetical protein RUMHYD_03830 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037050|gb|EEG47296.1| hypothetical protein RUMHYD_03830 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1044

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 145/453 (32%), Positives = 234/453 (51%), Gaps = 17/453 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW           + +A  +  L   +Q K+        +    ++     P+  T+ Q 
Sbjct: 443 EWNRTKTRVKGAVKDIARDLVKLYATRQEKEG--FVYGTDTVWQKEFEEMFPYEETEDQI 500

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI+D  +DM     M R++ GDVG GKT +AL A   A++ G Q V + P  ILAQQHY
Sbjct: 501 QAIEDTKRDMESTKIMDRLICGDVGYGKTEIALRAAFKAIQEGKQVVYLVPTTILAQQHY 560

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +  +   + VE++      A +RK LE +  G   ++IGTH +    ++Y  L L+
Sbjct: 561 NTFVQRMKEFPVRVELLCRFRTPAEQRKTLEGLKKGWVDVVIGTHRVLSKDVEYKDLGLL 620

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ +G  D+S + E P  R PI
Sbjct: 621 IIDEEQRFGVTHKEKIKKLKNNVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPMDRMPI 680

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  +  + V E ++  L  G + Y++  ++ +  E        R + L       +
Sbjct: 681 QTYVMEYDE-ETVREAVQRELKRGGQVYYVYNRVNDIAEVAS-----RLSQLLPDV--QV 732

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              HG+MS+ + E VM  F NG   +L++TT+IE G+D+ + + +II +++ +GL+QL+Q
Sbjct: 733 GFAHGQMSERELEKVMYEFINGELDVLVSTTIIETGLDISNVNTMIIHDSDRYGLSQLYQ 792

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGR+GR    +   L+Y     L + +  RLS ++   D   GF IA  DL+ R  G +
Sbjct: 793 LRGRIGRSNRTAYAFLMYRKNSILKETAEKRLSAIREFTDLGSGFKIAMRDLELRGAGNL 852

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           LG +Q G         +L+  +L  A K+AK I
Sbjct: 853 LGAQQHGHM--QAVGYDLYCKMLNEAVKEAKGI 883


>gi|194467674|ref|ZP_03073661.1| transcription-repair coupling factor [Lactobacillus reuteri 100-23]
 gi|194454710|gb|EDX43607.1| transcription-repair coupling factor [Lactobacillus reuteri 100-23]
          Length = 1179

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 235/447 (52%), Gaps = 19/447 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R   +  E +A ++  L  +++ +   G     +  + ++   N P++ T+ Q 
Sbjct: 572  EWAKTKRRVSSKIEDIADELVDLYAKREAE--KGYAFPKDDYLQKQFDANFPYNETRDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A+  AV  G Q   + P  +LAQQHY
Sbjct: 630  RSIDEIKEDMEKPKPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTVLAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              + +  +   I + +++        ++    +  G   +++GTH +    +++  L L+
Sbjct: 690  NTLMRRFEGFPINIALMSRFKTPKELKETEAGLKDGSVDVVVGTHRILSKDVEFKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ LG  D+S +   PAGR PI
Sbjct: 750  IVDEEQRFGVKHKEKLKQLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPI 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T ++  N    + + +   +  G + Y++  ++ + +        E    L E    + 
Sbjct: 810  QTYVMEQNS-GAIRDGIIREMQRGGQVYYLHNRVHDIE--------ETVAWLQELVPEAR 860

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I  I+G+MS+ + E+V+  F  G   +L+ T++IE G+D+ +A+ + +ENA+  GLAQL+
Sbjct: 861  IGYINGQMSENELETVLYEFIQGNYDVLVTTSIIETGVDIPNANTLFVENADRMGLAQLY 920

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            Q+RGR+GR   ++    +Y P   L++    RL+ +++      GF IA  DL  R  G 
Sbjct: 921  QIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLAIRGAGN 980

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +LG +Q G    +     L+ ++L  A
Sbjct: 981  LLGKQQHGFIDSVGYD--LYSAMLSDA 1005


>gi|293380357|ref|ZP_06626428.1| transcription-repair coupling factor [Lactobacillus crispatus
           214-1]
 gi|290923040|gb|EFD99971.1| transcription-repair coupling factor [Lactobacillus crispatus
           214-1]
          Length = 1164

 Score =  369 bits (947), Expect = e-99,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 235/450 (52%), Gaps = 19/450 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +   G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQKQFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            ++K+I QDM     M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSVKEIKQDMESSKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++        ++ +E + +G+  +++GTH +    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPVESKEIIEGLKNGKIDLVVGTHRILSQDVKFKNLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +T ++   +I  V+ +     +    + +++  +I +  E      VE+   L     + 
Sbjct: 801 QTYVME--QIPSVVRDACLREMQRDGQVFYLHNRISDIDE-----TVEKLQELMP--QAR 851

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+
Sbjct: 852 IAAAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLY 911

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G 
Sbjct: 912 QLRGRIGRSARLAYAYFLYKPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAGN 971

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +LG +Q G    +     L+  +L  A +D
Sbjct: 972 MLGAQQHGFIDSVGYD--LYSQMLADAIQD 999


>gi|254493915|ref|ZP_05107086.1| LOW QUALITY PROTEIN: transcription-repair coupling factor
           [Neisseria gonorrhoeae 1291]
 gi|226512955|gb|EEH62300.1| LOW QUALITY PROTEIN: transcription-repair coupling factor
           [Neisseria gonorrhoeae 1291]
          Length = 739

 Score =  369 bits (947), Expect = e-99,   Method: Composition-based stats.
 Identities = 150/449 (33%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 160 LNLYAQRAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 219

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 220 DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 279

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               +  LE +A G   I+IGTH L QD I++  L L+I+DE+HRFGV+Q+ +L +    
Sbjct: 280 SKATKATLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLRAN 339

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 340 VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 398

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 399 RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 451

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 452 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 511

Query: 601 SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 512 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLK 569

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLY 686
            A +D K    + PDL +  G +  I L+
Sbjct: 570 QAVRDLKK--GRQPDLDAPLGITTEIKLH 596


>gi|258540716|ref|YP_003175215.1| transcription-repair coupling factor [Lactobacillus rhamnosus Lc 705]
 gi|257152392|emb|CAR91364.1| Transcription-repair coupling factor [Lactobacillus rhamnosus Lc 705]
          Length = 1175

 Score =  369 bits (947), Expect = e-99,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 242/453 (53%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A ++  L  +++ +   G     +  + QK     P+  T  Q 
Sbjct: 567  EWQKTKRKVAARIEDIADELIDLYAKREAE--KGYAFGPDDDLQQKFEDEFPYPETPDQL 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + K+I +DM +   M R+L GDVG GKT VAL A   AV+ G Q  I+ P  ILAQQH+
Sbjct: 625  RSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPTTILAQQHF 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +K    +  + + +++        +  ++ + +G   I++GTH L    + +  L L+
Sbjct: 685  DTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + ++ Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 745  VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  +  G + +++  ++E+ + +  +        L     +SI
Sbjct: 805  QTFVMEQN-PGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ-----LEELVPD--ASI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+V+  F +G   +L+ TT+IE G+D+ +A+ +IIENA+H+GL+QL+Q
Sbjct: 857  GYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++    +Y P   L++ +  RL  +K+      GF IA  DL  R  G +
Sbjct: 917  LRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +L+ A    + +
Sbjct: 977  LGKQQHGFIDSVGYD--LYTQMLQEAVNKRRGL 1007


>gi|228476216|ref|ZP_04060919.1| transcription-repair coupling factor [Staphylococcus hominis SK119]
 gi|228269701|gb|EEK11200.1| transcription-repair coupling factor [Staphylococcus hominis SK119]
          Length = 1169

 Score =  369 bits (947), Expect = e-99,   Method: Composition-based stats.
 Identities = 159/477 (33%), Positives = 246/477 (51%), Gaps = 22/477 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +  +G     +         + P+  T  Q 
Sbjct: 568  EWKKTKAKVQQSVEDIADELIALY--KEREMSVGYQYGEDTAEQHDFEMDFPYELTPDQA 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM ++  M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 626  KSIEEIKEDMEKERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++I+        R+  E +  G   I++GTH L    IQY  L L+
Sbjct: 686  ETLIERMQDFPVEIQLISRFRTAKEVRETKEGLKSGYVDIVVGTHKLLSKDIQYKDLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++    T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 746  IVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 806  QTYVLEQNS-NFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPE--ANI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF NG   +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+Q
Sbjct: 858  AVAHGQMTERDLEETMLSFINGEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L   +  L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSSRIGYAYFLHSTNKVLTETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            LG +Q G    +     L+  +LE A  + + I  + PD   V      + L+L  Y
Sbjct: 978  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGITEEVPDAPDVE-----MELHLDAY 1027


>gi|120554850|ref|YP_959201.1| transcription-repair coupling factor [Marinobacter aquaeolei VT8]
 gi|120324699|gb|ABM19014.1| transcription-repair coupling factor [Marinobacter aquaeolei VT8]
          Length = 1173

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 157/496 (31%), Positives = 246/496 (49%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     +  H P  K     W++  ++ L      A ++  +  R++ +   G    
Sbjct: 548  HLISRYAGTDEEHAPLHKLGTERWSNAKQKALEKIRDTAAELLDVYARREAR--KGFQFE 605

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
               +  +      PF  T  Q+ AI+ + +DM+ +  M R++ GDVG GKT VA+ A   
Sbjct: 606  DPKEAYRAFAAGFPFEETPDQQVAIESVFEDMTSERPMDRLVCGDVGFGKTEVAMRAAFL 665

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A  +G Q  ++ P  +LAQQHYE  +    +T + VE+++     +   KA+  I  G+A
Sbjct: 666  ATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTPVTVELLSRFRSGSQTSKAITAIEEGKA 725

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L Q  I +  L LVI+DE+HRFGVQQ+ KL        +L +TATPIPRTL 
Sbjct: 726  DIVIGTHKLLQGDINFKNLGLVIIDEEHRFGVQQKEKLKSLRAEVDMLTLTATPIPRTLN 785

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +      D+S I   PA R  +KT +   +    V E +   +  G + Y++   +   +
Sbjct: 786  MAMGHLRDLSIIATPPARRLSVKTFVRQRDD-AMVKEAILREILRGGQVYFLHNDVATIE 844

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                    E    L     + + + HG+M +   E +M  F +    +L+ TT++E GID
Sbjct: 845  -----KTAEDLRKLIPE--ARVGVAHGQMRERQLEQIMSDFYHKRFNVLVCTTIVETGID 897

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL  PP  +S ++  RL  +  +
Sbjct: 898  IPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAISADARKRLDAISES 957

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            +D   GF++A  DL+ R  GE+LG +QSG  + +     L+  LL+ A K  +    + P
Sbjct: 958  QDLGAGFMLATHDLEIRGAGELLGEEQSGQIESI--GFTLYMQLLDEAVKAIRD--GRTP 1013

Query: 672  DLTSVRGQSIRILLYL 687
            +          + L +
Sbjct: 1014 NAELPLSHGTEMNLRI 1029


>gi|15671995|ref|NP_266169.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12722849|gb|AAK04111.1|AE006240_9 transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 1161

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 142/451 (31%), Positives = 234/451 (51%), Gaps = 17/451 (3%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  W           E ++  +  L   +Q K   G   + +    ++      +  
Sbjct: 552 KLNDGRWRKTMSSVSKQVEDISDDLIKLYAERQAK--KGFAFSPDDTSQEEFDSGFSYVE 609

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I +I  DM  +  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  +L
Sbjct: 610 TEDQMRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQVAVLVPTTVL 669

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH+    +   N  + VE+++    +  + + L ++  G+  +IIGTH L    ++++
Sbjct: 670 AEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGRVDLIIGTHRLLSKDVEFF 729

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ + +L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 730 DLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 789

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V + +   +S G + Y++  +++  ++   +        L   
Sbjct: 790 NRYPVQTYVMETN-YGVVRDAVLREISRGGQVYYVYNRVDTIEQKVSQ-----LEELIPE 843

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             + I  IHG+M+++  E+ + +F  G   +L+ATT+IE G+D+ +A+ + IENA+  GL
Sbjct: 844 --ARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNANTLFIENADMMGL 901

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQR 628
           +QL+QLRGRVGR   ++    +Y P   LS+ S  RL  +K       GF IA  DL  R
Sbjct: 902 SQLYQLRGRVGRSNRVAYAYFMYRPEKILSEVSEKRLEAIKGFTELGSGFKIAMRDLSIR 961

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG    +     L+  LLE A
Sbjct: 962 GAGNLLGSEQSGFIDSVGFD--LYSQLLEEA 990


>gi|325684691|gb|EGD26845.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 1158

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 143/449 (31%), Positives = 229/449 (51%), Gaps = 17/449 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    +   A  E +A  +  L  +++ +   G   + +G          P+ PT  Q 
Sbjct: 557 EWAKTKKRVAARVEDIADDLIDLYAKREAE--KGFAFSPDGSDQAAFEAAFPYEPTPDQL 614

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A  +I  DM +   M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQHY
Sbjct: 615 RATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHY 674

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + IK   +   + +   +    QA  +K +  +  G   +++GTH +    +Q+  L L+
Sbjct: 675 QTIKDRFKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQFKDLGLL 734

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + KL Q  T   VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 735 IIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPI 794

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++       V E  +  +  G + +++  ++ + +E      V R   L     + I
Sbjct: 795 QTYVLE-QLPGTVKEACQREMQRGGQVFYLHNRVGDIEE-----TVARLEQLLPE--ARI 846

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HG+MS+   E ++  F +    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+Q
Sbjct: 847 AYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLYQ 906

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGR+GR   ++    LY P   L++    RL  +++  +   GF IA  DL  R  G +
Sbjct: 907 LRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAMRDFTELGAGFKIAMRDLSIRGAGNM 966

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           LG +Q G    +     L+  +L  A K+
Sbjct: 967 LGAQQHGFIDSVGYD--LYSQMLADAIKE 993


>gi|126174619|ref|YP_001050768.1| transcription-repair coupling factor [Shewanella baltica OS155]
 gi|125997824|gb|ABN61899.1| transcription-repair coupling factor [Shewanella baltica OS155]
          Length = 1162

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 158/476 (33%), Positives = 246/476 (51%), Gaps = 19/476 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  W    ++ +     +A ++  +  R+Q +        ++ +   +  R  PF  T  
Sbjct: 558  NETWAKAKKKAIEKIRDVAAELLDVYARRQSRPGE--SCEIDEEEYAQFARGFPFEETVD 615

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            QESAI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQ
Sbjct: 616  QESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQ 675

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            HYE  K    +  ++ E+++       + + L+++  G+  I+IGTH L Q   ++  L 
Sbjct: 676  HYENFKDRFADWPVVTEVMSRFRTAKEQTQVLQQLEEGKVDIVIGTHKLLQSEAKFENLG 735

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R 
Sbjct: 736  LLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRL 795

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             +KT +   +    V E +   +  G + Y++   +E  +        +    L     +
Sbjct: 796  AVKTFVRESD-PATVREAILREILRGGQVYYLHNNVESIE-----KCAQGIIDLLPE--A 847

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGLAQL
Sbjct: 848  RVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQL 907

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR    +   L+   P  ++ ++  RL  +   ED   GF++A +DL+ R  G
Sbjct: 908  HQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGFMLATQDLEIRGAG 967

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            E+LG +QSG    +     L+  +LE A K  K    ++P L  +  Q   I L +
Sbjct: 968  ELLGDEQSGHISKIGFS--LYMEMLEAAVKALKQ--GKEPSLAQMLNQQCEIELRI 1019


>gi|217973128|ref|YP_002357879.1| transcription-repair coupling factor [Shewanella baltica OS223]
 gi|217498263|gb|ACK46456.1| transcription-repair coupling factor [Shewanella baltica OS223]
          Length = 1162

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 158/476 (33%), Positives = 246/476 (51%), Gaps = 19/476 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  W    ++ +     +A ++  +  R+Q +        ++ +   +  R  PF  T  
Sbjct: 558  NETWAKAKKKAIEKIRDVAAELLDVYARRQSRPGE--SCEIDEEEYAQFARGFPFEETVD 615

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            QESAI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQ
Sbjct: 616  QESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQ 675

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            HYE  K    +  ++ E+++       + + L+++  G+  I+IGTH L Q   ++  L 
Sbjct: 676  HYENFKDRFADWPVVTEVMSRFRTAKEQTQVLQQLEEGKVDIVIGTHKLLQSEAKFENLG 735

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R 
Sbjct: 736  LLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRL 795

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             +KT +   +    V E +   +  G + Y++   +E  +        +    L     +
Sbjct: 796  AVKTFVRESD-PATVREAILREILRGGQVYYLHNNVESIE-----KCAQGIIDLLPE--A 847

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGLAQL
Sbjct: 848  RVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQL 907

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR    +   L+   P  ++ ++  RL  +   ED   GF++A +DL+ R  G
Sbjct: 908  HQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGFMLATQDLEIRGAG 967

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            E+LG +QSG    +     L+  +LE A K  K    ++P L  +  Q   I L +
Sbjct: 968  ELLGDEQSGHISKIGFS--LYMEMLEAAVKALKQ--GKEPSLAQMLNQQCEIELRI 1019


>gi|281490512|ref|YP_003352492.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis KF147]
 gi|281374330|gb|ADA63863.1| Transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis KF147]
          Length = 1161

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 142/451 (31%), Positives = 234/451 (51%), Gaps = 17/451 (3%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  W           E ++  +  L   +Q K   G   + +    ++      +  
Sbjct: 552 KLNDGRWRKTMSSVSKQVEDISDDLIKLYAERQAK--KGFAFSPDDTSQEEFDSGFSYVE 609

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I +I  DM  +  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  +L
Sbjct: 610 TEDQMRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQVAVLVPTTVL 669

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH+    +   N  + VE+++    +  + + L ++  G+  +IIGTH L    ++++
Sbjct: 670 AEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGRVDLIIGTHRLLSKDVEFF 729

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ + +L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 730 DLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 789

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V + +   +S G + Y++  +++  ++   +        L   
Sbjct: 790 NRYPVQTYVMETN-YGVVRDAVLREISRGGQVYYVYNRVDTIEQKVSQ-----LEELIPE 843

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             + I  IHG+M+++  E+ + +F  G   +L+ATT+IE G+D+ +A+ + IENA+  GL
Sbjct: 844 --ARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNANTLFIENADMMGL 901

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQR 628
           +QL+QLRGRVGR   ++    +Y P   LS+ S  RL  +K       GF IA  DL  R
Sbjct: 902 SQLYQLRGRVGRSNRVAYAYFMYRPEKILSEVSEKRLEAIKGFTELGSGFKIAMRDLSIR 961

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG    +     L+  LLE A
Sbjct: 962 GAGNLLGSEQSGFIDSVGFD--LYSQLLEEA 990


>gi|323492540|ref|ZP_08097688.1| transcription-repair coupling factor [Vibrio brasiliensis LMG 20546]
 gi|323313327|gb|EGA66443.1| transcription-repair coupling factor [Vibrio brasiliensis LMG 20546]
          Length = 1153

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 150/464 (32%), Positives = 238/464 (51%), Gaps = 19/464 (4%)

Query: 229  AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
                 +A ++  +  +++ K   G    ++           PF  T  Q  AI  ++ DM
Sbjct: 562  EKVRDVAAELLDVYAKRELK--PGFKFELDRGQYATFKAGFPFEETDDQSMAINAVMSDM 619

Query: 289  SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
             Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E  +    N 
Sbjct: 620  CQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANL 679

Query: 349  QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
             I VE+++       +++ L+ I  G+  +++GTH L  + I++  L L+IVDE+HRFGV
Sbjct: 680  PIRVEVLSRFKTAKEQKQVLQDIEEGKVDLVVGTHKLLSNDIKFKDLGLLIVDEEHRFGV 739

Query: 409  QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            +Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IKT +   +  
Sbjct: 740  RQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQRDD- 798

Query: 469  DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
              V E +   +  G + Y++  Q+E  +      V      L     + + + HG+M + 
Sbjct: 799  AVVREAVLREIMRGGQVYFLHNQVETIE-----KVAADLEKLVPE--ARVTVAHGQMRER 851

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            + E +M+ F +    LL+ TT+IE GIDV  A+ II++ A++ GLAQLHQLRGRVGR   
Sbjct: 852  ELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQLRGRVGRSHH 911

Query: 589  ISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK 643
             +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG   
Sbjct: 912  QAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSGQI- 970

Query: 644  FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
                   L+  +LE A +  K    ++P L  +  +   + + L
Sbjct: 971  -QSVGFTLYMEMLEQAVEALKE--GKEPSLDELLREQTEVEMRL 1011


>gi|304408993|ref|ZP_07390614.1| transcription-repair coupling factor [Shewanella baltica OS183]
 gi|307302996|ref|ZP_07582751.1| transcription-repair coupling factor [Shewanella baltica BA175]
 gi|304352814|gb|EFM17211.1| transcription-repair coupling factor [Shewanella baltica OS183]
 gi|306913356|gb|EFN43778.1| transcription-repair coupling factor [Shewanella baltica BA175]
          Length = 1165

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 158/476 (33%), Positives = 246/476 (51%), Gaps = 19/476 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  W    ++ +     +A ++  +  R+Q +        ++ +   +  R  PF  T  
Sbjct: 558  NETWAKAKKKAIEKIRDVAAELLDVYARRQSRPGE--SCEIDEEEYAQFARGFPFEETVD 615

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            QESAI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQ
Sbjct: 616  QESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQ 675

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            HYE  K    +  ++ E+++       + + L+++  G+  I+IGTH L Q   ++  L 
Sbjct: 676  HYENFKDRFADWPVVTEVMSRFRTAKEQTQVLQQLEEGKVDIVIGTHKLLQSEAKFENLG 735

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R 
Sbjct: 736  LLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRL 795

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             +KT +   +    V E +   +  G + Y++   +E  +        +    L     +
Sbjct: 796  AVKTFVRESD-PATVREAILREILRGGQVYYLHNNVESIE-----KCAQGIIDLLPE--A 847

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGLAQL
Sbjct: 848  RVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQL 907

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR    +   L+   P  ++ ++  RL  +   ED   GF++A +DL+ R  G
Sbjct: 908  HQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGFMLATQDLEIRGAG 967

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            E+LG +QSG    +     L+  +LE A K  K    ++P L  +  Q   I L +
Sbjct: 968  ELLGDEQSGHISKIGFS--LYMEMLEAAVKALKQ--GKEPSLAQMLNQQCEIELRI 1019


>gi|167586917|ref|ZP_02379305.1| transcription-repair coupling factor [Burkholderia ubonensis Bu]
          Length = 1158

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 233/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++     ++    +  K   +  F  T  Q 
Sbjct: 553  QWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYV--KFAESFGFEETPDQA 610

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 611  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLSPTTLLAEQHT 670

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 671  QTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 730

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 731  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 790

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 791  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEELVPE--ARI 842

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            AI HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  ++ FGLAQLHQ
Sbjct: 843  AIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRSDKFGLAQLHQ 902

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 903  LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 962

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 963  LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1011


>gi|302184811|ref|ZP_07261484.1| transcription-repair coupling factor [Pseudomonas syringae pv.
            syringae 642]
          Length = 1150

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q++
Sbjct: 553  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFPFEETPDQQT 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I  +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 611  TIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYN 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI
Sbjct: 671  SFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 731  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   + E L   L  G + Y++   ++  +             L     + I 
Sbjct: 791  TFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 843  IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 963  GDGQSGQI--QAVGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 1011


>gi|160875623|ref|YP_001554939.1| transcription-repair coupling factor [Shewanella baltica OS195]
 gi|160861145|gb|ABX49679.1| transcription-repair coupling factor [Shewanella baltica OS195]
 gi|315267811|gb|ADT94664.1| transcription-repair coupling factor [Shewanella baltica OS678]
          Length = 1165

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 158/476 (33%), Positives = 246/476 (51%), Gaps = 19/476 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  W    ++ +     +A ++  +  R+Q +        ++ +   +  R  PF  T  
Sbjct: 558  NETWAKAKKKAIEKIRDVAAELLDVYARRQSRPGE--SCEIDEEEYAQFARGFPFEETVD 615

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            QESAI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQ
Sbjct: 616  QESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQ 675

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            HYE  K    +  ++ E+++       + + L+++  G+  I+IGTH L Q   ++  L 
Sbjct: 676  HYENFKDRFADWPVVTEVMSRFRTAKEQTQVLQQLEEGKVDIVIGTHKLLQSEAKFENLG 735

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R 
Sbjct: 736  LLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRL 795

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             +KT +   +    V E +   +  G + Y++   +E  +        +    L     +
Sbjct: 796  AVKTFVRESD-PATVREAILREILRGGQVYYLHNNVESIE-----KCAQGIIDLLPE--A 847

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGLAQL
Sbjct: 848  RVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQL 907

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR    +   L+   P  ++ ++  RL  +   ED   GF++A +DL+ R  G
Sbjct: 908  HQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGFMLATQDLEIRGAG 967

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            E+LG +QSG    +     L+  +LE A K  K    ++P L  +  Q   I L +
Sbjct: 968  ELLGDEQSGHISKIGFS--LYMEMLEAAVKALKQ--GKEPSLAQMLNQQCEIELRI 1019


>gi|167772369|ref|ZP_02444422.1| hypothetical protein ANACOL_03746 [Anaerotruncus colihominis DSM
           17241]
 gi|167665472|gb|EDS09602.1| hypothetical protein ANACOL_03746 [Anaerotruncus colihominis DSM
           17241]
          Length = 1157

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 134/451 (29%), Positives = 219/451 (48%), Gaps = 17/451 (3%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K    EW    +      E +A ++  L  ++      G   + +        R   +  
Sbjct: 559 KLNSIEWQKTRQRVKKAVEDMAKELTELYAKRMA--VKGYAFSPDTDWQNDFERRFAYDE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q   I +I  DM     M R+L GDVG GKT VAL A    V  G Q  ++ P  IL
Sbjct: 617 TDDQLRCIDEIKADMESSVPMDRLLCGDVGFGKTEVALRAAFKCVMDGKQCALLVPTTIL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A QHY+ + +  +   + V++++       +++ L+ +  G+  I+IGTH L QD +++ 
Sbjct: 677 AWQHYQTVTRRMEGFPVKVDLLSRFRSPREQKQVLDELRRGEIDIVIGTHRLVQDDVKFK 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L I+DE+ RFGV+ + K  +   A  VL ++ATPIPRTL +   G  D+S I E P 
Sbjct: 737 DLGLAIIDEEQRFGVRHKEKFKEIRAAVDVLTLSATPIPRTLNMAMSGIRDMSVIEEAPQ 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  +    V + ++  L  G + +++  ++E      +     R   L   
Sbjct: 797 DRHPVQTYVVEHD-WGVVAQAIERELRRGGQVFYLHNRVESIDSCAY-----RIKQLVP- 849

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             + I   HG+M++     V     +    +L+ TT+IE G+DV + + +IIE+A+  GL
Sbjct: 850 -QARIVTAHGKMTEEQLSRVWRQLLDYEVDILVCTTIIETGVDVPNCNTLIIEDADRMGL 908

Query: 574 AQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           +QL+QLRGRVGR    +   L +     LS  +  RL+ ++       GF IA  DL+ R
Sbjct: 909 SQLYQLRGRVGRSNRRAFAYLTFRRDKQLSDVASKRLAAIREFTTFGSGFRIAMRDLEIR 968

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G ILG +Q G  + +     ++  +L  A
Sbjct: 969 GAGNILGAQQHGHMEAVGYD--MYLKMLSEA 997


>gi|153000915|ref|YP_001366596.1| transcription-repair coupling factor [Shewanella baltica OS185]
 gi|151365533|gb|ABS08533.1| transcription-repair coupling factor [Shewanella baltica OS185]
          Length = 1162

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 158/476 (33%), Positives = 245/476 (51%), Gaps = 19/476 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  W    ++ +     +A ++  +  R+Q +        ++     +  R  PF  T  
Sbjct: 558  NETWAKAKKKAIEKIRDVAAELLDVYARRQSRPGE--SCEIDEDEYAQFARGFPFEETVD 615

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            QESAI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQ
Sbjct: 616  QESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQ 675

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            HYE  K    +  ++ E+++       + + L+++  G+  I+IGTH L Q   ++  L 
Sbjct: 676  HYENFKDRFADWPVVTEVMSRFRTAKEQTQVLQQLEEGKVDIVIGTHKLLQSEAKFENLG 735

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R 
Sbjct: 736  LLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRL 795

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             +KT +   +    V E +   +  G + Y++   +E  +        +    L     +
Sbjct: 796  AVKTFVRESD-PATVREAILREILRGGQVYYLHNNVESIE-----KCAQGIIDLLPE--A 847

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ IIIE A+ FGLAQL
Sbjct: 848  RVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQL 907

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR    +   L+   P  ++ ++  RL  +   ED   GF++A +DL+ R  G
Sbjct: 908  HQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGFMLATQDLEIRGAG 967

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            E+LG +QSG    +     L+  +LE A K  K    ++P L  +  Q   I L +
Sbjct: 968  ELLGDEQSGHISKIGFS--LYMEMLEAAVKALKQ--GKEPSLAQMLNQQCEIELRI 1019


>gi|313123080|ref|YP_004033339.1| transcription-repair coupling factor (superfamily ii helicase)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279643|gb|ADQ60362.1| Transcription-repair coupling factor (Superfamily II helicase)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 1158

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 143/449 (31%), Positives = 229/449 (51%), Gaps = 17/449 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    +   A  E +A  +  L  +++ +   G   + +G          P+ PT  Q 
Sbjct: 557 EWAKTKKRVAARVEDIADDLIDLYAKREAE--KGFAFSPDGSDQAAFEAAFPYEPTPDQL 614

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A  +I  DM +   M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQHY
Sbjct: 615 RATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHY 674

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + IK   +   + +   +    QA  +K +  +  G   +++GTH +    +Q+  L L+
Sbjct: 675 QTIKDRFKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQFKDLGLL 734

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + KL Q  T   VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 735 IIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPI 794

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++       V E  +  +  G + +++  ++ + +E      V R   L     + I
Sbjct: 795 QTYVLE-QLPGTVKEACQREMQRGGQVFYLHNRVGDIEE-----TVARLEQLLPE--ARI 846

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HG+MS+   E ++  F +    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+Q
Sbjct: 847 AYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLYQ 906

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGR+GR   ++    LY P   L++    RL  +++  +   GF IA  DL  R  G +
Sbjct: 907 LRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDLSIRGAGNM 966

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           LG +Q G    +     L+  +L  A K+
Sbjct: 967 LGAQQHGFIDSVGYD--LYSQMLADAIKE 993


>gi|241760119|ref|ZP_04758217.1| transcription-repair coupling factor [Neisseria flavescens SK114]
 gi|241319573|gb|EER56003.1| transcription-repair coupling factor [Neisseria flavescens SK114]
          Length = 1134

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 236/449 (52%), Gaps = 15/449 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 557 LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 616

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 617 DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 676

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 677 SKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 736

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 737 VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 795

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 796 RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 848

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 849 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYSYLLTPEYI 908

Query: 601 SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 909 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 966

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLY 686
            A +D K    + PDL +  G +  I L+
Sbjct: 967 QAVRDLKK--GRQPDLDAPLGITTEIKLH 993


>gi|167563120|ref|ZP_02356036.1| transcription-repair coupling factor [Burkholderia oklahomensis
            EO147]
          Length = 1157

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 231/473 (48%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++     +     +  K   +  F  T  Q 
Sbjct: 552  QWERAKRRAAQQIRDTAAELLNLYARRAAREGHAFALEPRDYV--KFAESFGFEETPDQA 609

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 610  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 669

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + V  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 670  QTFIDRFADWPVRVAELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 729

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 730  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 789

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +      +L     + I
Sbjct: 790  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRQAMLEALVPE--ARI 841

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 842  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 901

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 902  LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 961

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 962  LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1010


>gi|307822340|ref|ZP_07652572.1| transcription-repair coupling factor [Methylobacter tundripaludum
            SV96]
 gi|307736906|gb|EFO07751.1| transcription-repair coupling factor [Methylobacter tundripaludum
            SV96]
          Length = 1155

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 145/472 (30%), Positives = 239/472 (50%), Gaps = 19/472 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++ +     +A ++  +  ++  K+      +VE           PF  T  Q+
Sbjct: 554  QWGKVKQKAIKRIRDVAAELLEIHAKRAVKQG--HAFSVENVEYAAFADAFPFEETPDQQ 611

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ IL+DM+  + M R++ GDVG GKT V++ A   AV+ G Q  ++ P  +LAQQHY
Sbjct: 612  TAIEAILEDMASPHPMDRVICGDVGFGKTEVSMRAAFIAVQNGKQVAVLVPTTLLAQQHY 671

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +  +    +  + VE+++  +    +++  + +  G+  I+IGTH L    I+Y  L LV
Sbjct: 672  QNFRDRFADWPVRVEVLSRFVSPKQQKEITDDLEQGKVDIVIGTHKLLSKEIKYKALGLV 731

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+HRFGV Q+    +      +L +TATPIPRTL +   G  DIS I   P  R  I
Sbjct: 732  VIDEEHRFGVTQKEHFKKLRNELDMLTLTATPIPRTLNMAMSGLRDISIIASPPPNRHAI 791

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT I       ++ E     +  G + +++   ++  +      +     +L     + I
Sbjct: 792  KTFISQWID-AQIREACLREIKRGGQVFFLHNDVKSME-----KMARELEALVPE--ARI 843

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E +M  F +    LL+ +T+IE GID+  A+ III  A+  GLAQLHQ
Sbjct: 844  EIAHGQMPERELERIMLDFYHQRFNLLLCSTIIESGIDIPSANTIIINRADKLGLAQLHQ 903

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +    +  P   LSK++  RL  ++ + D   GF+++  D++ R  GE+
Sbjct: 904  LRGRVGRSHHRAYAYFVVPPLTLLSKDAIKRLEAVEASGDLGAGFMLSSHDMEIRGAGEL 963

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG  QSG  + +     L+  LLE A    K      P+L +   +   + L
Sbjct: 964  LGDDQSGQIQEI--GFTLYTELLERAVNALKS--GNQPELDAPMDRGPEVDL 1011


>gi|261867464|ref|YP_003255386.1| transcription-repair coupling factor [Aggregatibacter
            actinomycetemcomitans D11S-1]
 gi|261412796|gb|ACX82167.1| transcription-repair coupling factor [Aggregatibacter
            actinomycetemcomitans D11S-1]
          Length = 1173

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 254/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W     +       +A ++  +  +++ +   G     + +  Q+     PF 
Sbjct: 570  HKLGSEAWGKARSKAAEKIRDVAAELLDVYAQREAQ--KGFSFQYDREEFQQFTATFPFE 627

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q  AI  ++ DM+Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 628  ETHDQLMAINAVISDMTQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 687

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH++  K    N  + VE+++       +++ ++ +A G+  I+IGTH + Q  +Q+
Sbjct: 688  LAQQHFDNFKDRFANLPVNVEMLSRFKTAKEQKRVIQDLADGKVDILIGTHKIIQGDVQF 747

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            + L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 748  HDLGLLIIDEEHRFGVRQKEKMKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 807

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  + E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 808  ARRLTIKTFVRQTDDL-VIREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVP 861

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A++FG
Sbjct: 862  E--ARVTVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFG 919

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L++ ++   GF++A  DL+ 
Sbjct: 920  LAQLHQLRGRVGRSHHQAYAYLLTPPPKLMTKDAQKRLEALESLDNLGAGFILATHDLEI 979

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LLE A K  K    ++P L  +  Q   I L +
Sbjct: 980  RGAGELLGNEQSGQIESIGFS--LYMELLERAVKALKE--GREPSLDELTQQQTEIDLRV 1035


>gi|269967617|ref|ZP_06181667.1| transcription-repair coupling factor [Vibrio alginolyticus 40B]
 gi|269827704|gb|EEZ81988.1| transcription-repair coupling factor [Vibrio alginolyticus 40B]
          Length = 1153

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 150/464 (32%), Positives = 235/464 (50%), Gaps = 19/464 (4%)

Query: 229  AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
                 +A ++  +  +++ K   G    ++           PF  T  Q  AI  +L DM
Sbjct: 562  EKVRDVAAELLDVYAKRELK--PGFKFELDRGQYATFKATFPFEETDDQAMAINAVLSDM 619

Query: 289  SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
             Q   M R++ GDVG GKT VA+ A   A +   Q  ++ P  +LAQQH+E  +    N 
Sbjct: 620  CQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVPTTLLAQQHFENFRDRFANL 679

Query: 349  QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
             I VE+++       ++  L+ +A G+  I++GTH L    I++  L L+IVDE+HRFGV
Sbjct: 680  PIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSDIKFKDLGLLIVDEEHRFGV 739

Query: 409  QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            +Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IKT +      
Sbjct: 740  RQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFV-RQKEE 798

Query: 469  DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
              V E +   +  G + Y++  Q+E  +        E    L     + I + HG+M + 
Sbjct: 799  PVVREAVLREIMRGGQVYFLHNQVETIE-----KTAEDLQKLIPE--ARITVAHGQMRER 851

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            + E +M+ F +    +L+ TT+IE GIDV  A+ II++ A++ GLAQLHQLRGRVGR   
Sbjct: 852  ELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQLRGRVGRSHH 911

Query: 589  ISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK 643
             +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG   
Sbjct: 912  QAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSGQI- 970

Query: 644  FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
                   L+  +LE A +  K    ++P L  +  +   + + +
Sbjct: 971  -QSVGFTLYMEMLEQAVQALKE--GKEPSLDELLREQTEVEMRI 1011


>gi|124385069|ref|YP_001029254.1| transcription-repair coupling factor [Burkholderia mallei NCTC 10229]
 gi|126448727|ref|YP_001080811.1| transcription-repair coupling factor [Burkholderia mallei NCTC 10247]
 gi|167919435|ref|ZP_02506526.1| transcription-repair coupling factor [Burkholderia pseudomallei
            BCC215]
 gi|238562222|ref|ZP_00440803.2| transcription-repair coupling factor [Burkholderia mallei GB8 horse
            4]
 gi|251766640|ref|ZP_02264525.2| transcription-repair coupling factor [Burkholderia mallei PRL-20]
 gi|254178318|ref|ZP_04884973.1| transcription-repair coupling factor [Burkholderia mallei ATCC 10399]
 gi|254200090|ref|ZP_04906456.1| transcription-repair coupling factor [Burkholderia mallei FMH]
 gi|254206426|ref|ZP_04912778.1| transcription-repair coupling factor [Burkholderia mallei JHU]
 gi|254297281|ref|ZP_04964734.1| transcription-repair coupling factor [Burkholderia pseudomallei 406e]
 gi|254358165|ref|ZP_04974438.1| transcription-repair coupling factor [Burkholderia mallei 2002721280]
 gi|124293089|gb|ABN02358.1| transcription-repair coupling factor [Burkholderia mallei NCTC 10229]
 gi|126241597|gb|ABO04690.1| transcription-repair coupling factor [Burkholderia mallei NCTC 10247]
 gi|147749686|gb|EDK56760.1| transcription-repair coupling factor [Burkholderia mallei FMH]
 gi|147753869|gb|EDK60934.1| transcription-repair coupling factor [Burkholderia mallei JHU]
 gi|148027292|gb|EDK85313.1| transcription-repair coupling factor [Burkholderia mallei 2002721280]
 gi|157807451|gb|EDO84621.1| transcription-repair coupling factor [Burkholderia pseudomallei 406e]
 gi|160699357|gb|EDP89327.1| transcription-repair coupling factor [Burkholderia mallei ATCC 10399]
 gi|238523096|gb|EEP86537.1| transcription-repair coupling factor [Burkholderia mallei GB8 horse
            4]
 gi|243065028|gb|EES47214.1| transcription-repair coupling factor [Burkholderia mallei PRL-20]
          Length = 1189

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 231/473 (48%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++       ++ +   K   +  F  T  Q 
Sbjct: 584  QWERAKRRAAQQIRDTAAELLNLYARRAAREG--HAFGLDPRDYVKFADSFGFEETPDQA 641

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 642  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 701

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 702  QTFADRFADWPVRIAELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 761

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 762  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 821

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 822  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEELVPE--ARI 873

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 874  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 933

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 934  LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 993

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 994  LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1042


>gi|229589088|ref|YP_002871207.1| transcription-repair coupling factor [Pseudomonas fluorescens SBW25]
 gi|229360954|emb|CAY47814.1| transcription-repair coupling factor [Pseudomonas fluorescens SBW25]
          Length = 1149

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                     F  T  Q++
Sbjct: 552  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFAFEETPDQQT 609

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 610  TIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTTLLAQQHYN 669

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L  D ++   L LVI
Sbjct: 670  SFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDVKIKNLGLVI 729

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 730  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 789

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   V E L   L  G + Y++   ++  +             L     + IA
Sbjct: 790  TFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIA 841

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 842  IGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 901

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 902  RGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 961

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L L
Sbjct: 962  GDGQSGQI--QAVGFTLYMEMLERAVKAIRK--GEQPNLDQPLGGGPEINLRL 1010


>gi|167570304|ref|ZP_02363178.1| transcription-repair coupling factor [Burkholderia oklahomensis
            C6786]
          Length = 1157

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 231/473 (48%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++     +     +  K   +  F  T  Q 
Sbjct: 552  QWERAKRRAAQQIRDTAAELLNLYARRAAREGHAFALEPRDYV--KFAESFGFEETPDQA 609

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 610  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 669

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + V  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 670  QTFIDRFADWPVRVAELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 729

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 730  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 789

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +      +L     + I
Sbjct: 790  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRQAMLEALVPE--ARI 841

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 842  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 901

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 902  LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 961

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 962  LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1010


>gi|227512317|ref|ZP_03942366.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC
           11577]
 gi|227084492|gb|EEI19804.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC
           11577]
          Length = 1168

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 139/446 (31%), Positives = 235/446 (52%), Gaps = 17/446 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  ++  +   G     +  +  +     P++ T  Q 
Sbjct: 559 EWQKTKRKVASKIEDIADDLIELYAKRDAE--KGYAYPPDDSLQNEFEARFPYTETPDQL 616

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I  DM     M R+L GDVG GKT VAL A   AVE G Q   + P  ILAQQHY
Sbjct: 617 RSADEIKHDMEHNKPMDRLLVGDVGYGKTEVALRAAFKAVEVGKQVAFLVPTTILAQQHY 676

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + +   +  I V +++     A  ++ LE +  G   +++GTH L    +++  L L+
Sbjct: 677 ETMLERFSDYPIEVRVLSRFQTTAQIKETLEGLKKGTVDVVVGTHRLLSKDVKFSNLGLL 736

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + ++ +  T   VL +TATPIPRTL ++ +G  D+S I   P+ R PI
Sbjct: 737 IIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIPRTLNMSMMGVRDLSVIETPPSNRYPI 796

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T +I  N    + E ++  ++ G + +++  ++ + +++  +      + L     + I
Sbjct: 797 QTYVIEQN-AGTIREAIEREMARGGQVFYLHNRVADIEKTVSQ-----LSELVPD--ARI 848

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A IHG+M++   E ++  F NG   +L+ TT+IE G+D+ + + + +ENA+H GL+QL+Q
Sbjct: 849 AYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADHMGLSQLYQ 908

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGR+GR   ++    +Y P   L++    RL  +++      GF IA  DL  R  G +
Sbjct: 909 LRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELGSGFKIAMRDLSIRGAGNL 968

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIA 659
           LG +QSG    +     L+  +L  A
Sbjct: 969 LGKQQSGFVDSVGYD--LYTQMLSDA 992


>gi|226327606|ref|ZP_03803124.1| hypothetical protein PROPEN_01477 [Proteus penneri ATCC 35198]
 gi|225204132|gb|EEG86486.1| hypothetical protein PROPEN_01477 [Proteus penneri ATCC 35198]
          Length = 443

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 132/432 (30%), Positives = 217/432 (50%), Gaps = 22/432 (5%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL+T  GVG   +  L+KI            DLL + P  + D+ +   
Sbjct: 1   MKGKLLDAI--PLTTLHGVGASQADKLAKI------GLVTIEDLLLHLPLRYEDQTHLYA 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           IS++      T++G + + +     +R+     ++DG+G +TL FF     M KN   +G
Sbjct: 53  ISDLLPGIPATVSGEVLR-TEVSFGRRKMMTCQISDGSGILTLRFFNFTVAM-KNNLAQG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYI--FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++   G++K+      ++HP Y      ++      +  +YS   GL     +K+I +A
Sbjct: 111 KQVIAYGEVKRGSRGPEIIHPEYKIKVAGAEVKLQETLTPIYSTTEGLRQTSLRKLIEQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDE 232
           L  L    + E +    +     P +A A   +HNP     F    +   PA++RL  +E
Sbjct: 171 LELLDTCAINELLPDQFI--HGLPPLATALRTLHNPPPDIAFAQLEKGQHPAQKRLIIEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIP--INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           LLA  + +L  R   +     P  +     + Q+ L  +PF+PT +Q+  + +I  D+ +
Sbjct: 229 LLAHNLGMLNARAGAQSYRAEPLFMPSTSTLRQQFLAMLPFTPTNAQQRVVNEIETDLEK 288

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
              M+R++QGDVGSGKTLVA ++   A+  G Q  +MAP  +LA+QH    +K+ +   I
Sbjct: 289 NYPMMRLIQGDVGSGKTLVAALSALRAIANGKQVALMAPTELLAEQHALTFRKWFEPFGI 348

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V  + G      R      IA+G+  IIIGTHA+FQ+ ++++ L LVI+DEQHRFGV Q
Sbjct: 349 QVGWLAGKQKGKAREAQQNAIANGEVSIIIGTHAIFQEQVKFHSLALVIIDEQHRFGVHQ 408

Query: 411 RLKLTQKATAPH 422
           RL L +K     
Sbjct: 409 RLALWKKGRRAR 420



 Score = 38.9 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI-EVGIDVVDASIII 564
            F    E F   +  + G+     +E+  ++  NG   ++I T  I +  +     +++I
Sbjct: 338 TFRKWFEPFGIQVGWLAGKQKGKAREAQQNAIANGEVSIIIGTHAIFQEQVKFHSLALVI 397

Query: 565 IENAEHFGLAQLHQL-----RGRVGR 585
           I+    FG   +HQ      +GR  R
Sbjct: 398 IDEQHRFG---VHQRLALWKKGRRAR 420


>gi|330982230|gb|EGH80333.1| transcription-repair coupling factor [Pseudomonas syringae pv. aptata
            str. DSM 50252]
          Length = 1150

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q++
Sbjct: 553  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFPFEETPDQQT 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I  +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 611  TIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYN 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI
Sbjct: 671  SFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 731  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   + E L   L  G + Y++   ++  +             L     + I 
Sbjct: 791  TFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 843  IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 963  GDGQSGQI--QAVGFPLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 1011


>gi|227522403|ref|ZP_03952452.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC
           8290]
 gi|227090461|gb|EEI25773.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC
           8290]
          Length = 1168

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 139/446 (31%), Positives = 235/446 (52%), Gaps = 17/446 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  ++  +   G     +  +  +     P++ T  Q 
Sbjct: 559 EWQKTKRKVASKIEDIADDLIELYAKRDAE--KGYAYPPDDSLQNEFEARFPYTETPDQL 616

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I  DM     M R+L GDVG GKT VAL A   AVE G Q   + P  ILAQQHY
Sbjct: 617 RSADEIKHDMEHNKPMDRLLVGDVGYGKTEVALRAAFKAVEVGKQVAFLVPTTILAQQHY 676

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + +   +  I V +++     A  ++ LE +  G   +++GTH L    +++  L L+
Sbjct: 677 ETMLERFSDYPIEVRVLSRFQTTAQIKETLEGLKKGTVDVVVGTHRLLSKDVKFSNLGLL 736

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + ++ +  T   VL +TATPIPRTL ++ +G  D+S I   P+ R PI
Sbjct: 737 IIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIPRTLNMSMMGVRDLSVIETPPSNRYPI 796

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T +I  N    + E ++  ++ G + +++  ++ + +++  +      + L     + I
Sbjct: 797 QTYVIEQN-AGTIREAIEREMARGGQVFYLHNRVADIEKTVSQ-----LSELVPD--ARI 848

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A IHG+M++   E ++  F NG   +L+ TT+IE G+D+ + + + +ENA+H GL+QL+Q
Sbjct: 849 AYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADHMGLSQLYQ 908

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGR+GR   ++    +Y P   L++    RL  +++      GF IA  DL  R  G +
Sbjct: 909 LRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELGSGFKIAMRDLSIRGAGNL 968

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIA 659
           LG +QSG    +     L+  +L  A
Sbjct: 969 LGKQQSGFVDSVGYD--LYTQMLSDA 992


>gi|116510854|ref|YP_808070.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116106508|gb|ABJ71648.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 1162

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 141/451 (31%), Positives = 234/451 (51%), Gaps = 17/451 (3%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  W           E ++  +  L   +Q K   G   + +    ++      +  
Sbjct: 552 KLNDGRWRKTMSSVSKQVEDISDDLIKLYAERQAK--KGFAFSPDDASQEEFDSGFSYVE 609

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I +I  DM  +  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  +L
Sbjct: 610 TEDQIRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQVAVLVPTTVL 669

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH+    +   N  + VE+++    +  + + L ++  G+  +IIGTH L    ++++
Sbjct: 670 AEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGRVDLIIGTHRLLSKDVEFF 729

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ + +L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 730 DLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 789

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V + +   +S G + Y++  +++  ++   +        L   
Sbjct: 790 NRYPVQTYVMETN-YGVVRDAILREISRGGQVYYVYNRVDTIEQKVSQ-----LEELIPE 843

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             + I  IHG+M+++  E+ + +F  G   +L+ATT+IE G+D+ +++ + IENA+  GL
Sbjct: 844 --ARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNSNTLFIENADMMGL 901

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQR 628
           +QL+QLRGRVGR   ++    +Y P   LS+ S  RL  +K       GF IA  DL  R
Sbjct: 902 SQLYQLRGRVGRSNRVAYAYFMYRPEKILSEVSEKRLEAIKGFTELGSGFKIAMRDLSIR 961

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG    +     L+  LLE A
Sbjct: 962 GAGNLLGSEQSGFIDSVGFD--LYSQLLEEA 990


>gi|256844410|ref|ZP_05549896.1| transcription-repair coupling factor [Lactobacillus crispatus
           125-2-CHN]
 gi|256613488|gb|EEU18691.1| transcription-repair coupling factor [Lactobacillus crispatus
           125-2-CHN]
          Length = 1164

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 235/450 (52%), Gaps = 19/450 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +   G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQKQFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            ++K+I QDM     M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSVKEIKQDMESSKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++        ++ +E + +G+  +++GTH +    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNTTMLSRFQTPVESKEIIEGLKNGKIDLVVGTHRILSQDVKFKNLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +T ++   +I  V+ +     +    + +++  +I +  E      VE+   L     + 
Sbjct: 801 QTYVME--QIPSVVRDACLREMQRDGQVFYLHNRISDIDE-----TVEKLQELMP--QAR 851

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+
Sbjct: 852 IAAAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLY 911

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G 
Sbjct: 912 QLRGRIGRSARLAYAYFLYKPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAGN 971

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +LG +Q G    +     L+  +L  A +D
Sbjct: 972 MLGAQQHGFIDSVGYD--LYSQMLADAIQD 999


>gi|187777479|ref|ZP_02993952.1| hypothetical protein CLOSPO_01047 [Clostridium sporogenes ATCC 15579]
 gi|187774407|gb|EDU38209.1| hypothetical protein CLOSPO_01047 [Clostridium sporogenes ATCC 15579]
          Length = 1172

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 237/465 (50%), Gaps = 19/465 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT    +     E +A  +  L          G   + +    ++     P+  T  Q 
Sbjct: 577  EWTKTKNKVKKSIEEIAEDLVKLYA--IRATLKGYKYSDDTVWQKQFEEEFPYEETPDQV 634

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+DI +DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 635  LAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQHY 694

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+   +  + V++I+     + ++  ++ I  G   I+IGTH + Q  I++  L L+
Sbjct: 695  NNFKQRFSDFPVTVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGLL 754

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  DIS I   P  R P+
Sbjct: 755  IIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYPV 814

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T ++  N    + + +   +S G + Y++  ++E        S+ E  + + +      
Sbjct: 815  QTYVVEYND-QLIRDSILREISRGGQIYFVYNRVE--------SIHEMASYISKLVPEGR 865

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M + + E+V+  F      +L+ATT+IE G+D+ + + +II +A+  GL+QL+
Sbjct: 866  VQIAHGQMKEKELENVVLDFTENKFDILVATTIIETGMDIKNVNTMIIYDADKMGLSQLY 925

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++ C L Y     L++ +  RL  +K+      GF IA +DL+ R  G 
Sbjct: 926  QLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALKDLEIRGAGN 985

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            ++G  Q G    +     L+  +LE   K  +  + ++P  TSV 
Sbjct: 986  MMGSAQHGHMASIGYD--LYCRMLEDTIKLVRGDIDKEPVETSVE 1028


>gi|262047218|ref|ZP_06020176.1| transcription-repair coupling factor [Lactobacillus crispatus
           MV-3A-US]
 gi|312978409|ref|ZP_07790151.1| transcription-repair coupling factor [Lactobacillus crispatus
           CTV-05]
 gi|260572463|gb|EEX29025.1| transcription-repair coupling factor [Lactobacillus crispatus
           MV-3A-US]
 gi|310894752|gb|EFQ43824.1| transcription-repair coupling factor [Lactobacillus crispatus
           CTV-05]
          Length = 1164

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 235/450 (52%), Gaps = 19/450 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +   G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQKQFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            ++K+I QDM     M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSVKEIKQDMESSKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++        ++ +E + +G+  +++GTH +    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNTTMLSRFQTPVESKEIIEGLKNGKIDLVVGTHRILSQDVKFKNLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +T ++   +I  V+ +     +    + +++  +I +  E      VE+   L     + 
Sbjct: 801 QTYVME--QIPSVVRDACLREMQRDGQVFYLHNRISDIDE-----TVEKLQELMP--QAR 851

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+
Sbjct: 852 IAAAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLY 911

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G 
Sbjct: 912 QLRGRIGRSARLAYAYFLYKPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAGN 971

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +LG +Q G    +     L+  +L  A +D
Sbjct: 972 MLGAQQHGFIDSVGYD--LYSQMLADAIQD 999


>gi|145298863|ref|YP_001141704.1| transcription-repair coupling factor [Aeromonas salmonicida subsp.
            salmonicida A449]
 gi|142851635|gb|ABO89956.1| transcription-repair coupling factor [Aeromonas salmonicida subsp.
            salmonicida A449]
          Length = 1154

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 160/485 (32%), Positives = 240/485 (49%), Gaps = 21/485 (4%)

Query: 210  HNPRKAK--DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
             NP   K     W    R+       +A ++  +   +  +         + +  ++   
Sbjct: 544  DNPPSHKLGGEAWVKARRKAAEKVRDVAAELLDVYALRAARHG--FAFQHDREAYRQFAA 601

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
              PF  T+ Q +AI  +L DM Q   M R++ GDVG GKT VA+ A   AV  G Q  ++
Sbjct: 602  GFPFEETEDQLNAINAVLGDMCQAKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAVL 661

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +LAQQHY+  +    N  + VE+++       +   ++ +A G+  IIIGTH L  
Sbjct: 662  VPTTLLAQQHYDNFRDRFANWPVRVEVLSRFRTAREQTSVMKELADGKVDIIIGTHKLLG 721

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              + +  L L+IVDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S 
Sbjct: 722  SDLTFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMAGMRDLSI 781

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
            I   PA R  IKT +   +      E +   L  G + Y++   +E  ++          
Sbjct: 782  IATPPAKRLAIKTFVRQQD-PAVTREAVLRELKRGGQVYYLHNDVESIEKCAGD-----L 835

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              L     + I I HG+M + D E VM  F +    LL+ T++IE GIDV  A+ II++ 
Sbjct: 836  AELVPE--ARIGIAHGQMRERDLERVMSDFYHQRFNLLVCTSIIETGIDVPSANTIIMDR 893

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
            A+H GLAQLHQLRGRVGR    +   LL   P  +SK++  RL  + + ED   GF +A 
Sbjct: 894  ADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKLMSKDALKRLEAIASLEDLGAGFALAT 953

Query: 623  EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
             DL+ R  GE+LG  QSG  +       L+  +LE A +  K+   ++P L  +  Q   
Sbjct: 954  HDLEIRGAGELLGDDQSGQIE--SVGFTLYMEMLEQAVEALKN--GKEPSLEQLMSQHTE 1009

Query: 683  ILLYL 687
            + L L
Sbjct: 1010 VELRL 1014


>gi|91225270|ref|ZP_01260438.1| transcription-repair coupling factor [Vibrio alginolyticus 12G01]
 gi|91189909|gb|EAS76181.1| transcription-repair coupling factor [Vibrio alginolyticus 12G01]
          Length = 1153

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 150/464 (32%), Positives = 235/464 (50%), Gaps = 19/464 (4%)

Query: 229  AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
                 +A ++  +  +++ K   G    ++           PF  T  Q  AI  +L DM
Sbjct: 562  EKVRDVAAELLDVYAKRELK--PGFKFELDRGQYATFKATFPFEETDDQAMAINAVLSDM 619

Query: 289  SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
             Q   M R++ GDVG GKT VA+ A   A +   Q  ++ P  +LAQQH+E  +    N 
Sbjct: 620  CQAKAMDRLVCGDVGFGKTEVAMRAAFIATDNSKQVAVLVPTTLLAQQHFENFRDRFANL 679

Query: 349  QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
             I VE+++       ++  L+ +A G+  I++GTH L    I++  L L+IVDE+HRFGV
Sbjct: 680  PIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSDIKFKDLGLLIVDEEHRFGV 739

Query: 409  QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            +Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IKT +      
Sbjct: 740  RQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFV-RQKEE 798

Query: 469  DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
              V E +   +  G + Y++  Q+E  +        E    L     + I + HG+M + 
Sbjct: 799  PVVREAVLREIMRGGQVYFLHNQVETIE-----KTAEDLQKLIPE--ARITVAHGQMRER 851

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            + E +M+ F +    +L+ TT+IE GIDV  A+ II++ A++ GLAQLHQLRGRVGR   
Sbjct: 852  ELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQLRGRVGRSHH 911

Query: 589  ISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK 643
             +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG   
Sbjct: 912  QAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSGQI- 970

Query: 644  FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
                   L+  +LE A +  K    ++P L  +  +   + + +
Sbjct: 971  -QSVGFTLYMEMLEQAVQALKE--GKEPSLDELLREQTEVEMRI 1011


>gi|227509305|ref|ZP_03939354.1| transcription-repair coupling factor [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227191235|gb|EEI71302.1| transcription-repair coupling factor [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 1168

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 139/446 (31%), Positives = 235/446 (52%), Gaps = 17/446 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  ++  +   G     +  +  +     P++ T  Q 
Sbjct: 559 EWQKTKRKVASKIEDIADDLIELYAKRDAE--KGYAYPPDDSLQNEFEARFPYTETPDQL 616

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I  DM     M R+L GDVG GKT VAL A   AVE G Q   + P  ILAQQHY
Sbjct: 617 RSADEIKHDMEHNKPMDRLLVGDVGYGKTEVALRAAFKAVEVGKQVAFLVPTTILAQQHY 676

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + +   +  I V +++     A  ++ LE +  G   +++GTH L    +++  L L+
Sbjct: 677 ETMLERFSDYPIEVRVLSRFQTTAQIKETLEGLKKGTVDVVVGTHRLLSKDVKFSNLGLL 736

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + ++ +  T   VL +TATPIPRTL ++ +G  D+S I   P+ R PI
Sbjct: 737 IIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIPRTLNMSMMGVRDLSVIETPPSNRYPI 796

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T +I  N    + E ++  ++ G + +++  ++ + +++  +      + L     + I
Sbjct: 797 QTYVIEQN-AGTIREAIEREMARGGQVFYLHNRVADIEKTVSQ-----LSELVPD--ARI 848

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A IHG+M++   E ++  F NG   +L+ TT+IE G+D+ + + + +ENA+H GL+QL+Q
Sbjct: 849 AYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADHMGLSQLYQ 908

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGR+GR   ++    +Y P   L++    RL  +++      GF IA  DL  R  G +
Sbjct: 909 LRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELGSGFKIAMRDLSIRGAGNL 968

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIA 659
           LG +QSG    +     L+  +L  A
Sbjct: 969 LGKQQSGFVDSVGYD--LYTQMLSDA 992


>gi|237797686|ref|ZP_04586147.1| transcription-repair coupling factor [Pseudomonas syringae pv. oryzae
            str. 1_6]
 gi|331020536|gb|EGI00593.1| transcription-repair coupling factor [Pseudomonas syringae pv. oryzae
            str. 1_6]
          Length = 1150

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 235/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q++
Sbjct: 553  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFPFEETPDQQT 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 611  TIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYN 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI
Sbjct: 671  SFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 731  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   + E L   L  G + Y++   ++  +             L     + I 
Sbjct: 791  TFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 843  IGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 963  GDGQSGQI--QAVGFTLYMEMLERAVKAIRK--GEQPNLDQPLGGGPEINLRV 1011


>gi|188584709|ref|YP_001916254.1| transcription-repair coupling factor [Natranaerobius thermophilus
            JW/NM-WN-LF]
 gi|179349396|gb|ACB83666.1| transcription-repair coupling factor [Natranaerobius thermophilus
            JW/NM-WN-LF]
          Length = 1196

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 141/461 (30%), Positives = 230/461 (49%), Gaps = 21/461 (4%)

Query: 212  PRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
            P K       EW    +   +  + LA  +  L   +  +   G   + +    ++    
Sbjct: 575  PPKLYSLGSSEWQKVKQRVKSSVKELAEDLLKLYAERSSR--KGYAFSQDTPWQKEFEDY 632

Query: 269  IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             P+  T  Q+ AI +I +D+  +  M R+L GDVG GKT VA+ A   AV  G Q  ++ 
Sbjct: 633  FPYELTPDQKKAISEIKEDLESEQPMDRLLCGDVGYGKTEVAMRAAFKAVMEGKQVCVLV 692

Query: 329  PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            P  ILAQQH++  K+      + + +I+    Q   +   E +  G A IIIGTH L   
Sbjct: 693  PTTILAQQHFQTFKERFAPYPVDIRVISRFSSQKDEKLVKEEMKEGNAEIIIGTHKLLNK 752

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            S+++  L L+I+DE+ RFGVQ + K+        VL MTATPIPRTL ++ +G  D+S I
Sbjct: 753  SVKFRDLGLLIIDEEQRFGVQHKEKIKMLKKNLDVLTMTATPIPRTLHMSLVGVRDLSVI 812

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
               P GR P++T ++  +    + E +   +S   + Y +  +++       +   E  +
Sbjct: 813  ETPPEGRFPVQTYVMEHS-PQLIREAVNREISREGQVYVVHNRVK----GINKVAKEVAD 867

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                   + + + HG+M +   E VM  F  G   +L++T+++E G+D+ + + III NA
Sbjct: 868  ---WVPDAKVGVAHGQMPEKQLERVMLDFYEGKYDVLVSTSIVEAGLDIQNVNTIIIYNA 924

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEE 623
            +  GL+Q +QLRGRVGR   ++   L Y     L++ +  RL  +K       GF +A  
Sbjct: 925  DRMGLSQPYQLRGRVGRSNRMAYAYLTYQKDKVLTQEAEKRLKAIKEFTELGSGFKLALR 984

Query: 624  DLKQRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARK 661
            DL+ R  G ILG +Q G      F +    L D++ EI+++
Sbjct: 985  DLEIRGAGNILGPEQHGHIMAVGFDMYTKMLKDAIKEISQE 1025


>gi|71278327|ref|YP_268864.1| transcription-repair coupling factor [Colwellia psychrerythraea 34H]
 gi|71144067|gb|AAZ24540.1| transcription-repair coupling factor [Colwellia psychrerythraea 34H]
          Length = 1207

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 146/462 (31%), Positives = 233/462 (50%), Gaps = 20/462 (4%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W+   ++       +A ++  +  ++            + +  Q    +  F 
Sbjct: 606  HKLGNDTWSKAKQKAAEKVRDVAAELLDIYAKRASNHG--YSFKRDKQDYQAFSDSFGFE 663

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q+ AI  ++ DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +
Sbjct: 664  ETFDQKQAINAVVSDMLSPKTMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTL 723

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  +    N  ++ E+++       +++ + R+  GQ  I+IGTH L Q+SI+Y
Sbjct: 724  LAQQHYENFRDRFANWPVVTEVLSRFKTPKEQKEVIARVESGQVDILIGTHKLLQNSIKY 783

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L++VDE+HRFGV+Q+ K+ Q  +   +L +TATPIPRTL +   G  D+S I   P
Sbjct: 784  KDLGLLVVDEEHRFGVKQKEKIKQLRSNVDILTLTATPIPRTLNMAMGGMRDLSIIATPP 843

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  +KT +   +    + E +    S G + Y++   ++   +            L  
Sbjct: 844  AKRLAVKTFVREHDE-ALIREAVLRETSRGGQVYYLHNHVDTIDK-----TAADIQKLVP 897

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + +   HG+M + + E +M  F +    +++ TT+IE GIDV  A+ II++ A+H G
Sbjct: 898  E--ARVVTAHGQMRERELERIMSDFYHQRFNVIVCTTIIETGIDVPSANTIIMDRADHLG 955

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL      ++K++  RL  + + ED   GF +A  DL+ 
Sbjct: 956  LAQLHQLRGRVGRSHHQAYAYLLTPHEKRITKDAKKRLEAIASLEDLGAGFTLATHDLEI 1015

Query: 628  RKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHI 666
            R  GE+LG  QSG      F +    L  ++   A K+ K +
Sbjct: 1016 RGAGELLGEDQSGSMCQVGFSLYMEMLDQAV--AALKEGKQL 1055


>gi|295692138|ref|YP_003600748.1| transcription-repair coupling factor [Lactobacillus crispatus ST1]
 gi|295030244|emb|CBL49723.1| Transcription-repair coupling factor [Lactobacillus crispatus ST1]
          Length = 1164

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 141/449 (31%), Positives = 234/449 (52%), Gaps = 19/449 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +   G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQKQFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            ++K+I QDM     M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSVKEIKQDMESSKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++        ++ +E + +G+  +++GTH +    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPVESKEIIEGLKNGKVDLVVGTHRILSQDVKFKNLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +T ++   +I  V+ +     +    + +++  +I +  E      VE+   L     + 
Sbjct: 801 QTYVME--QIPSVVRDACLREMQRDGQVFYLHNRISDIDE-----TVEKLQELMP--QAR 851

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+
Sbjct: 852 IAAAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLY 911

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G 
Sbjct: 912 QLRGRIGRSARLAYAYFLYKPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAGN 971

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +LG +Q G    +     L+  +L  A K
Sbjct: 972 MLGAQQHGFIDSVGYD--LYSQMLADAIK 998


>gi|330817293|ref|YP_004360998.1| Transcription-repair coupling factor [Burkholderia gladioli BSR3]
 gi|327369686|gb|AEA61042.1| Transcription-repair coupling factor [Burkholderia gladioli BSR3]
          Length = 1156

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 156/479 (32%), Positives = 231/479 (48%), Gaps = 19/479 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +W    R+        A ++  L  R+  ++     +     +  K   +  F 
Sbjct: 546  HSLGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALEPRDYV--KFAESFGFE 603

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +
Sbjct: 604  ETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTL 663

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QH +       +  + V  ++          A+ +I  G   I+IGTH L    +Q+
Sbjct: 664  LAEQHTQTFIDRFADWPVRVAELSRFKSTKEVNAAIGQINEGSVDIVIGTHKLLSSDVQF 723

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P
Sbjct: 724  KRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAP 783

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  IKT +        + E +   L  G + Y++  ++E  +     +       L  
Sbjct: 784  QKRLAIKTFV-RREEDSVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEELVP 837

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + IAI HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FG
Sbjct: 838  E--ARIAIAHGQMHERELERVMRDFVGQRANVLLCTTIIETGIDVPSANTIIMHRADKFG 895

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ 
Sbjct: 896  LAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEI 955

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE+LG KQSG    +  Q  L+  +L  A K  K+   ++PDL +    +  I L+
Sbjct: 956  RGTGEVLGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GREPDLLAPLAATTEINLH 1010


>gi|298486416|ref|ZP_07004477.1| Transcription-repair coupling factor [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
 gi|298159044|gb|EFI00104.1| Transcription-repair coupling factor [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
          Length = 1152

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 235/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q++
Sbjct: 555  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFPFEETPDQQT 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 613  TIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYN 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI
Sbjct: 673  SFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 733  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   + E L   L  G + Y++   ++  +             L     + I 
Sbjct: 793  TFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 845  IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 965  GDGQSGQI--QAVGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 1013


>gi|254247951|ref|ZP_04941272.1| Transcription-repair coupling factor [Burkholderia cenocepacia PC184]
 gi|124872727|gb|EAY64443.1| Transcription-repair coupling factor [Burkholderia cenocepacia PC184]
          Length = 1164

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++      +++ +   K   +  F  T  Q 
Sbjct: 561  QWERAKRKAAQQIRDTAAELLNLYARRAAREG--HAFSLDPRDYVKFAESFGFEETPDQA 618

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 619  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLSPTTLLAEQHT 678

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 679  QTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 738

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 739  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 798

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +      +L     + I
Sbjct: 799  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEALVPE--ARI 850

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 851  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 910

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 911  LRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 970

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 971  LGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1019


>gi|330869865|gb|EGH04574.1| transcription-repair coupling factor [Pseudomonas syringae pv.
            aesculi str. 0893_23]
 gi|330986245|gb|EGH84348.1| transcription-repair coupling factor [Pseudomonas syringae pv.
            lachrymans str. M301315]
 gi|331013175|gb|EGH93231.1| transcription-repair coupling factor [Pseudomonas syringae pv. tabaci
            ATCC 11528]
          Length = 1150

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 235/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q++
Sbjct: 553  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFPFEETPDQQT 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 611  TIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYN 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI
Sbjct: 671  SFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 731  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   + E L   L  G + Y++   ++  +             L     + I 
Sbjct: 791  TFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 843  IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 963  GDGQSGQI--QAVGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 1011


>gi|289648570|ref|ZP_06479913.1| transcription-repair coupling factor [Pseudomonas syringae pv.
            aesculi str. 2250]
          Length = 1150

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 235/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q++
Sbjct: 553  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFPFEETPDQQT 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 611  TIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYN 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI
Sbjct: 671  SFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 731  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   + E L   L  G + Y++   ++  +             L     + I 
Sbjct: 791  TFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 843  IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 963  GDGQSGQI--QAVGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 1011


>gi|330954492|gb|EGH54752.1| transcription-repair coupling factor [Pseudomonas syringae Cit 7]
          Length = 912

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    R+       +A ++  +  R+  ++                    PF  T  Q++
Sbjct: 315 WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFPFEETPDQQT 372

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            I  +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 373 TIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYN 432

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI
Sbjct: 433 SFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVI 492

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 493 IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 552

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T ++  N+   + E L   L  G + Y++   ++  +             L     + I 
Sbjct: 553 TFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 604

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 605 IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 664

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 665 RGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 724

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 725 GDGQSGQI--QAVGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 773


>gi|53723684|ref|YP_103135.1| transcription-repair coupling factor [Burkholderia mallei ATCC 23344]
 gi|121600246|ref|YP_993304.1| transcription-repair coupling factor [Burkholderia mallei SAVP1]
 gi|52427107|gb|AAU47700.1| transcription-repair coupling factor [Burkholderia mallei ATCC 23344]
 gi|121229056|gb|ABM51574.1| transcription-repair coupling factor [Burkholderia mallei SAVP1]
          Length = 1157

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 231/473 (48%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++       ++ +   K   +  F  T  Q 
Sbjct: 552  QWERAKRRAAQQIRDTAAELLNLYARRAAREG--HAFGLDPRDYVKFADSFGFEETPDQA 609

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 610  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 669

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 670  QTFADRFADWPVRIAELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 729

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 730  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 789

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 790  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEELVPE--ARI 841

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 842  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 901

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 902  LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 961

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 962  LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1010


>gi|125622895|ref|YP_001031378.1| transcription-repair coupling factor [Lactococcus lactis subsp.
            cremoris MG1363]
 gi|124491703|emb|CAL96622.1| Transcription-repair coupling factor (TRCF) [Lactococcus lactis
            subsp. cremoris MG1363]
 gi|300069633|gb|ADJ59033.1| transcription-repair coupling factor [Lactococcus lactis subsp.
            cremoris NZ9000]
          Length = 1180

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 141/451 (31%), Positives = 234/451 (51%), Gaps = 17/451 (3%)

Query: 214  KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            K  D  W           E ++  +  L   +Q K   G   + +    ++      +  
Sbjct: 570  KLNDGRWRKTMSSVSKQVEDISDDLIKLYAERQAK--KGFAFSPDDASQEEFDSGFSYVE 627

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T+ Q  +I +I  DM  +  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  +L
Sbjct: 628  TEDQIRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQVAVLVPTTVL 687

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            A+QH+    +   N  + VE+++    +  + + L ++  G+  +IIGTH L    ++++
Sbjct: 688  AEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGRVDLIIGTHRLLSKDVEFF 747

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L L+I+DE+ RFGV+ + +L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 748  DLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 807

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             R P++T ++  N    V + +   +S G + Y++  +++  ++   +        L   
Sbjct: 808  NRYPVQTYVMETN-YGVVRDAILREISRGGQVYYVYNRVDTIEQKVSQ-----LEELIPE 861

Query: 514  FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              + I  IHG+M+++  E+ + +F  G   +L+ATT+IE G+D+ +++ + IENA+  GL
Sbjct: 862  --ARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNSNTLFIENADMMGL 919

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQR 628
            +QL+QLRGRVGR   ++    +Y P   LS+ S  RL  +K       GF IA  DL  R
Sbjct: 920  SQLYQLRGRVGRSNRVAYAYFMYRPEKILSEVSEKRLEAIKGFTELGSGFKIAMRDLSIR 979

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
              G +LG +QSG    +     L+  LLE A
Sbjct: 980  GAGNLLGSEQSGFIDSVGFD--LYSQLLEEA 1008


>gi|170733304|ref|YP_001765251.1| transcription-repair coupling factor [Burkholderia cenocepacia MC0-3]
 gi|169816546|gb|ACA91129.1| transcription-repair coupling factor [Burkholderia cenocepacia MC0-3]
          Length = 1156

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++      +++ +   K   +  F  T  Q 
Sbjct: 553  QWERAKRKAAQQIRDTAAELLNLYARRAAREG--HAFSLDPRDYVKFAESFGFEETPDQA 610

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 611  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLSPTTLLAEQHT 670

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 671  QTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 730

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 731  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 790

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +      +L     + I
Sbjct: 791  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEALVPE--ARI 842

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 843  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 902

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 903  LRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 962

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 963  LGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1011


>gi|107102552|ref|ZP_01366470.1| hypothetical protein PaerPA_01003616 [Pseudomonas aeruginosa PACS2]
          Length = 1148

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 238/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q+S
Sbjct: 551  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--FAFKDPQADYATFSAGFPFEETPDQQS 608

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ ++ DM     M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQHY 
Sbjct: 609  AIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVLVPTTLLAQQHYN 668

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A   +A G+  I+IGTH L Q+ +++  L LV+
Sbjct: 669  SFRDRFADWPVSVEVMSRFKSAKEVENAARLLAEGKIDILIGTHKLLQEDVKFANLGLVV 728

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 729  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 788

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++   +   + E L   L  G + Y++  +++  ++            L     + I 
Sbjct: 789  TFVME-QQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARD-----LAELVPE--ARIG 840

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+IE A+ FGLAQLHQL
Sbjct: 841  IGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTILIERADKFGLAQLHQL 900

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + N +D   GF++A  DL+ R  GE+L
Sbjct: 901  RGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGELL 960

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    + L +
Sbjct: 961  GDGQSGQI--QAVGFTLYMEMLERAVKAIRK--GEQPNLEQPLGGGPEVNLRV 1009


>gi|227878367|ref|ZP_03996322.1| transcriptional repair coupling factor [Lactobacillus crispatus
           JV-V01]
 gi|256849202|ref|ZP_05554635.1| transcriptional repair coupling factor [Lactobacillus crispatus
           MV-1A-US]
 gi|227862046|gb|EEJ69610.1| transcriptional repair coupling factor [Lactobacillus crispatus
           JV-V01]
 gi|256713978|gb|EEU28966.1| transcriptional repair coupling factor [Lactobacillus crispatus
           MV-1A-US]
          Length = 1164

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 235/450 (52%), Gaps = 19/450 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L  +++ +   G   + +  + ++     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQKQFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            ++K+I QDM     M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSVKEIKQDMESSKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++        ++ +E + +G+  +++GTH +    +++  L L+
Sbjct: 681 ETIQDRFKDFPVNTTMLSRFQTPVESKEIIEGLKNGKIDLVVGTHRILSQDVKFKNLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +T ++   +I  V+ +     +    + +++  +I +  E      VE+   L     + 
Sbjct: 801 QTYVME--QIPSVVRDACLREMQRDGQVFYLHNRISDIDE-----TVEKLQELMP--QAR 851

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+
Sbjct: 852 IAAAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLY 911

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G 
Sbjct: 912 QLRGRIGRSARLAYAYFLYKPNKVLTEVGEKRLDAIRDFTELGSGFKIAMRDLSIRGAGN 971

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +LG +Q G    +     L+  +L  A +D
Sbjct: 972 MLGAQQHGFIDSVGYD--LYSQMLADAIQD 999


>gi|323701604|ref|ZP_08113276.1| transcription-repair coupling factor [Desulfotomaculum nigrificans
            DSM 574]
 gi|323533377|gb|EGB23244.1| transcription-repair coupling factor [Desulfotomaculum nigrificans
            DSM 574]
          Length = 1169

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 145/466 (31%), Positives = 240/466 (51%), Gaps = 21/466 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +       +A ++  L   +Q     G   + +     +     P+  T  Q 
Sbjct: 575  EWAKAKAKVKEAVRDMAKELLELYAARQ--TVKGHAFSPDTPWQAEFEAQFPYEETPDQL 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI ++ +DM ++  M R+L GDVG GKT VAL A   AV    Q  ++ P  ILAQQHY
Sbjct: 633  RAIAEVKRDMEKERPMDRLLCGDVGYGKTEVALRAAFKAVMDNKQVAVLVPTTILAQQHY 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++   N  I +E+++       +R+ L  +A G+  ++IGTH L QD + +  L L+
Sbjct: 693  NTFRERFANYPIRIEMLSRFRTPKEQRQVLAGLATGEVDVVIGTHRLVQDDVIFKDLGLL 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV  + +L Q      VL +TATPIPRTL ++ +G  D S +   P  R P+
Sbjct: 753  VVDEEQRFGVAHKERLKQMRKNVDVLTLTATPIPRTLHMSLVGVRDTSVLETPPEERFPV 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TS 516
            +T ++  +    + E ++  L+ G + Y++  ++ +          +R     +     +
Sbjct: 813  QTYVLEEDPT-LIREAIRRELNRGGQVYFVHNRVMDL---------DRLAGWLQDLVPEA 862

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             IA+ HG+M + + E +M  F +G   +L+ TT++E G+D+ + + +I+++A+HFGL+QL
Sbjct: 863  RIAVAHGQMKEDELEQIMLEFMDGAYDVLVCTTIVETGLDISNVNTLIVKDADHFGLSQL 922

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
            +QLRGRVGR   ++    L+     L++ S  RLS ++       GF IA  DL+ R  G
Sbjct: 923  YQLRGRVGRTNRLAYAYFLFRRDKVLTEVSERRLSAIREFTEFGSGFKIAMRDLEIRGAG 982

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
             ILG +Q G         +L+  LLE A  +A+    + P  T+V 
Sbjct: 983  NILGAEQHGHI--AEVGFDLYCRLLEEAVHEARGEKVEQPVDTAVE 1026


>gi|188589474|ref|YP_001919598.1| transcription-repair coupling factor [Clostridium botulinum E3 str.
            Alaska E43]
 gi|188499755|gb|ACD52891.1| transcription-repair coupling factor [Clostridium botulinum E3 str.
            Alaska E43]
          Length = 1167

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 233/458 (50%), Gaps = 17/458 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +       +A  +  L   +      G   + + +  ++     PF  T  Q 
Sbjct: 575  EWQKAKAKVRKSINDIAEDLVKLYATRS--TIKGHKFSKDTQWQRQFEDEFPFEETPDQL 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +++++I +DM     M R+L GDVG GKT VAL A   AV  G Q  ++ P  ILA+QHY
Sbjct: 633  TSLEEIKKDMESDKVMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVALLVPTTILAEQHY 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +KK   +  I +++++       ++  ++R+  G   I++GTH L    IQ+  L L+
Sbjct: 693  KNMKKRFSDFPIKIDMVSRFRTAKEQKATIQRLKEGNVDILVGTHKLVSKDIQFKDLGLL 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R P+
Sbjct: 753  IVDEEQRFGVSQKEKIKNIKKNVDVLTLSATPIPRTLHMSLTGARDISVIETAPEERYPV 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + + +   +  G + Y++  ++E+  E            L     S +
Sbjct: 813  QTYVVEQND-QLIRDAILREIGRGGQVYFVYNRVEDINEMARY-----VQELVPE--SKV 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++ HG+M++   E  M SF +    +L+ TT+IE GID+ + + II+ N++  GL+QL+Q
Sbjct: 865  SVTHGQMTERQLEKEMLSFMDQESNVLVCTTIIETGIDIPNVNTIIVYNSDKMGLSQLYQ 924

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+   LLY     L++ +  RL  LK+      GF IA  DL+ R  G I
Sbjct: 925  LRGRVGRSNRIAYAYLLYAKDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNI 984

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            +G  Q G    +     L+  +LE   K  K  ++++P
Sbjct: 985  MGSSQHGHMASVGYD--LYCRMLEDTIKIIKGEISKEP 1020


>gi|15598198|ref|NP_251692.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
            PAO1]
 gi|218890799|ref|YP_002439663.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
            LESB58]
 gi|9949103|gb|AAG06390.1|AE004725_3 transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
            PAO1]
 gi|218771022|emb|CAW26787.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
            LESB58]
          Length = 1148

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 238/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q+S
Sbjct: 551  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--FAFKDPQADYATFSAGFPFEETPDQQS 608

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ ++ DM     M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQHY 
Sbjct: 609  AIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVLVPTTLLAQQHYN 668

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A   +A G+  I+IGTH L Q+ +++  L LV+
Sbjct: 669  SFRDRFADWPVSVEVMSRFKSAKEVENAARLLAEGKIDILIGTHKLLQEDVKFANLGLVV 728

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 729  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 788

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++   +   + E L   L  G + Y++  +++  ++            L     + I 
Sbjct: 789  TFVME-QQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARD-----LAELVPE--ARIG 840

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+IE A+ FGLAQLHQL
Sbjct: 841  IGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTILIERADKFGLAQLHQL 900

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + N +D   GF++A  DL+ R  GE+L
Sbjct: 901  RGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGELL 960

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    + L +
Sbjct: 961  GDGQSGQI--QAVGFTLYMEMLERAVKAIRK--GEQPNLEQPLGGGPEVNLRV 1009


>gi|116051004|ref|YP_790170.1| transcription-repair coupling factor [Pseudomonas aeruginosa
            UCBPP-PA14]
 gi|313108292|ref|ZP_07794324.1| transcription-repair coupling factor [Pseudomonas aeruginosa 39016]
 gi|115586225|gb|ABJ12240.1| transcription-repair coupling factor [Pseudomonas aeruginosa
            UCBPP-PA14]
 gi|310880826|gb|EFQ39420.1| transcription-repair coupling factor [Pseudomonas aeruginosa 39016]
          Length = 1148

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 238/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q+S
Sbjct: 551  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--FAFKDPQADYATFSAGFPFEETPDQQS 608

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ ++ DM     M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQHY 
Sbjct: 609  AIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVLVPTTLLAQQHYN 668

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A   +A G+  I+IGTH L Q+ +++  L LV+
Sbjct: 669  SFRDRFADWPVSVEVMSRFKSAKEVENAARLLAEGKIDILIGTHKLLQEDVKFANLGLVV 728

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 729  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 788

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++   +   + E L   L  G + Y++  +++  ++            L     + I 
Sbjct: 789  TFVME-QQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARD-----LAELVPE--ARIG 840

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+IE A+ FGLAQLHQL
Sbjct: 841  IGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTILIERADKFGLAQLHQL 900

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + N +D   GF++A  DL+ R  GE+L
Sbjct: 901  RGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGELL 960

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    + L +
Sbjct: 961  GDGQSGQI--QAVGFTLYMEMLERAVKAIRK--GEQPNLEQPLGGGPEVNLRV 1009


>gi|300812086|ref|ZP_07092534.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496925|gb|EFK31999.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 1158

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 143/449 (31%), Positives = 229/449 (51%), Gaps = 17/449 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    +   A  E +A  +  L  +++ +   G   + +G          P+ PT  Q 
Sbjct: 557 EWAKTKKRVAARVEDIADDLIDLYAKREAE--KGFAFSPDGSDQAAFEAAFPYEPTPDQL 614

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A  +I  DM +   M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQHY
Sbjct: 615 RATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHY 674

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + IK   +   + +   +    QA  +K +  +  G   +++GTH +    +Q+  L L+
Sbjct: 675 QTIKDRFKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQFKDLGLL 734

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + KL Q  T   VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 735 IIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPI 794

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++       V E  +  +  G + +++  ++ + +E      V R   L     + I
Sbjct: 795 QTYVLE-QLPGTVKEACQREMQRGGQVFYLHNRVGDIEE-----TVARLEQLLPE--ARI 846

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HG+MS+   E ++  F +    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+Q
Sbjct: 847 AYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLYQ 906

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGR+GR   ++    LY P   L++    RL  +++  +   GF IA  DL  R  G +
Sbjct: 907 LRGRIGRSVRLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDLSIRGAGNM 966

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           LG +Q G    +     L+  +L  A K+
Sbjct: 967 LGAQQHGFIDSVGYD--LYSQMLADAIKE 993


>gi|206560380|ref|YP_002231144.1| transcription-repair coupling factor [Burkholderia cenocepacia J2315]
 gi|198036421|emb|CAR52317.1| transcription-repair coupling factor [Burkholderia cenocepacia J2315]
          Length = 1164

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++      +++ +   K   +  F  T  Q 
Sbjct: 561  QWERAKRKAAQQIRDTAAELLNLYARRAAREG--HAFSLDPRDYVKFAESFGFEETPDQA 618

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 619  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLSPTTLLAEQHT 678

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 679  QTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 738

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 739  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 798

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +      +L     + I
Sbjct: 799  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEALVPE--ARI 850

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 851  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 910

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 911  LRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 970

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 971  LGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1019


>gi|85711280|ref|ZP_01042339.1| Transcription-repair coupling factor, superfamily II helicase
            [Idiomarina baltica OS145]
 gi|85694781|gb|EAQ32720.1| Transcription-repair coupling factor, superfamily II helicase
            [Idiomarina baltica OS145]
          Length = 1159

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 150/480 (31%), Positives = 241/480 (50%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K  +  W    +        +A ++  +  ++   +  G  I+ +    Q+   + PF 
Sbjct: 556  HKLGNDSWEKAKKRAAEKIRDVAAELLDVYAKRASNEGYGFTIDADD--YQRFADSFPFE 613

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI  ++QDM+  + M R++ GDVG GKT VA+ A   AV    Q +++ P  +
Sbjct: 614  ETTDQLNAINAVVQDMAAPHPMDRLVCGDVGFGKTEVAMRAAFIAVNDSRQVMVLVPTTL 673

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHY+  K    +  + +E+++        ++ +     GQ  I+IGTH L Q  I  
Sbjct: 674  LAQQHYDNFKDRFADWPVRIEVLSRFKTAKQSKQIIADTESGQVDILIGTHKLLQGDINA 733

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+IVDE+HRFGV+Q+  + +      +L +TATPIPRTL +      D+S I   P
Sbjct: 734  KALGLLIVDEEHRFGVRQKEAIKRLRANVDILTLTATPIPRTLNMAMNNIRDLSIIATPP 793

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  +KT +   +    + E +      G + Y++   ++  +            +L  
Sbjct: 794  ARRLAVKTFVREHDN-ATIREAILRETLRGGQVYFLHNNVDTIE-----KTAREIEALVP 847

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               +S+ + HG+M + + E +M  F +    +L+ TT+IE GIDV  A+ III+ A+H G
Sbjct: 848  E--ASVTVAHGQMRERELERIMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIDRADHLG 905

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL   P  ++K++  RL  +   ED   GF++A  DL+ 
Sbjct: 906  LAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDALKRLEAIAQLEDLGAGFMLATHDLEI 965

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG  QSG  + +     L+  +LE A +  K+   Q+P L  +      I L +
Sbjct: 966  RGAGELLGDDQSGQIESI--GFTLYTDMLEQAVESLKN--GQEPTLEGLTRNRAEIDLRI 1021


>gi|296388503|ref|ZP_06877978.1| transcription-repair coupling factor [Pseudomonas aeruginosa PAb1]
          Length = 1148

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 238/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q+S
Sbjct: 551  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--FAFKDPQADYASFSAGFPFEETPDQQS 608

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ ++ DM     M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQHY 
Sbjct: 609  AIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVLVPTTLLAQQHYN 668

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A   +A G+  I+IGTH L Q+ +++  L LV+
Sbjct: 669  SFRDRFADWPVSVEVMSRFKSAKEVENAARLLAEGKIDILIGTHKLLQEDVKFANLGLVV 728

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 729  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 788

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++   +   + E L   L  G + Y++  +++  ++            L     + I 
Sbjct: 789  TFVME-QQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARD-----LAELVPE--ARIG 840

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+IE A+ FGLAQLHQL
Sbjct: 841  IGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTILIERADKFGLAQLHQL 900

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + N +D   GF++A  DL+ R  GE+L
Sbjct: 901  RGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGELL 960

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    + L +
Sbjct: 961  GDGQSGQI--QAVGFTLYMEMLERAVKAIRK--GEQPNLEQPLGGGPEVNLRV 1009


>gi|320540384|ref|ZP_08040034.1| putative transcription-repair coupling factor [Serratia symbiotica
            str. Tucson]
 gi|320029315|gb|EFW11344.1| putative transcription-repair coupling factor [Serratia symbiotica
            str. Tucson]
          Length = 1158

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT   ++       +A ++  +  ++  K   G       +  Q   +  PF  T  Q+ 
Sbjct: 557  WTRARQKAAERVRDVAAELLDIYAQRVAK--TGFSFKHNREQYQLFCQTFPFETTLDQQQ 614

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GD+G GKT VA+ A   AVE G Q  ++ P  +LAQQH++
Sbjct: 615  AINAVLSDMCQPLAMDRLVCGDIGFGKTEVAMRAAFLAVENGKQVAVLVPTTLLAQQHFD 674

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       I +++++       +++ L+  A G+  IIIGTH L Q  + +  L L+I
Sbjct: 675  NFRDRFATWPIRIDMMSRFRSAKEQQQVLDAAATGKVDIIIGTHKLLQGDLCWRDLGLLI 734

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 735  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 794

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E  +++  +        L     + IA
Sbjct: 795  TFVREYDSL-MVREAILREVLRGGQVYYLYNDVENIEKAEQK-----LAELVPE--ARIA 846

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+ FGLAQLHQL
Sbjct: 847  IGHGQMRERNLERVMNDFHHQRFNVLVCTTIIETGIDIASANTIIIERADRFGLAQLHQL 906

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  +S ++  RL+ + + ED   GF +A  DL+ R  GE+L
Sbjct: 907  RGRVGRSHHQAYAYLLTPNPQAMSADAQKRLAAIASLEDLGAGFALATHDLEIRGAGELL 966

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     L+  LLE A    K+   ++P L  +      + L +
Sbjct: 967  GEDQSGQMTTIGFS--LYMELLESAVDALKN--GREPSLEDLTSSQAEVELRM 1015


>gi|213157165|ref|YP_002319210.1| transcription-repair coupling factor [Acinetobacter baumannii AB0057]
 gi|213056325|gb|ACJ41227.1| transcription-repair coupling factor [Acinetobacter baumannii AB0057]
          Length = 1153

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 152/473 (32%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555  WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613  AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673  SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   N    + E +   L  G + Y++  ++E  +        E    L     + +A
Sbjct: 793  TFV-QENTDASIKEAILRELLRGGQVYFLHNEVETIE-----RAAENIRVLVPE--ARVA 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 965  GEQQSGSMQAIGYS--LYMEMLEKATKAIQQ--GKTPNFDAPLSLTAEINLHI 1013


>gi|152985046|ref|YP_001347529.1| transcription-repair coupling factor [Pseudomonas aeruginosa PA7]
 gi|150960204|gb|ABR82229.1| transcription-repair coupling factor [Pseudomonas aeruginosa PA7]
          Length = 1148

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 152/473 (32%), Positives = 239/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q+S
Sbjct: 551  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--FAFKDPQADYATFSAGFPFEETPDQQS 608

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ ++ DM     M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQHY 
Sbjct: 609  AIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVLVPTTLLAQQHYN 668

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A  ++A G+  I+IGTH L Q+ +++  L LVI
Sbjct: 669  SFRDRFADWPVNVEVMSRFKSAKEVESAARQLAEGKIDILIGTHKLLQEDVRFANLGLVI 728

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 729  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 788

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++   +   + E L   L  G + Y++  +++  ++            L     + I 
Sbjct: 789  TFVME-QQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARD-----LAELVPE--ARIG 840

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+IE A+ FGLAQLHQL
Sbjct: 841  IGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTILIERADKFGLAQLHQL 900

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + N +D   GF++A  DL+ R  GE+L
Sbjct: 901  RGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGELL 960

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    + L +
Sbjct: 961  GDGQSGQI--QAVGFTLYMEMLERAVKAIRK--GEQPNLEQPLGGGPEVNLRV 1009


>gi|134095113|ref|YP_001100188.1| transcription-repair ATP-dependent coupling factor [Herminiimonas
            arsenicoxydans]
 gi|133739016|emb|CAL62064.1| Transcription-repair-coupling factor (TRCF) (ATP-dependent helicase
            Mfd) [Herminiimonas arsenicoxydans]
          Length = 1148

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 148/474 (31%), Positives = 225/474 (47%), Gaps = 19/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++                  +  F  T  Q 
Sbjct: 554  QWEKAKRRAAEKIRDTAAELLNLYARRALREG--HSFEYSAHDYAAFADSFGFEETVDQA 611

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++QDM+    M R++ GDVG GKT VAL A   AV  G Q  I+AP  +LA+QH 
Sbjct: 612  AAINAVIQDMTSGKPMDRLICGDVGFGKTEVALRAAFIAVLGGKQVAILAPTTLLAEQHA 671

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++         +A++ +A G   I+IGTH L     ++ +L LV
Sbjct: 672  QTFADRFADWPVRIAELSRFRSGKEITQAMKGMADGTIDIVIGTHKLLSADTKFSRLGLV 731

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 732  IIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMALEGLRDFSIIATAPQKRLAI 791

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +   N    + E     L  G + Y++  ++E  +     +       L     + I
Sbjct: 792  KTFVRSEN-ASVIREACLRELKRGGQVYFLHNEVETIE-----NRKAMLEELMPE--ARI 843

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG++ + D E +M  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 844  GVAHGQLHERDLERIMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQ 903

Query: 579  LRGRVGRGEEISSCILLYHP-----PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H       L++     +  ++    GF +A  DL+ R  GE+
Sbjct: 904  LRGRVGRSHHQAYAYLLVHDVQGLSKLAQRRLDAIQQMEELGSGFYLAMHDLEIRGAGEV 963

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            LG  QSG    +  Q  L+  +L  A +  K+   ++PDL +    +  I L++
Sbjct: 964  LGDNQSGEMTEIGFQ--LYSDMLNEAVRSLKN--GKEPDLAAPLATTTEINLHV 1013


>gi|169796102|ref|YP_001713895.1| transcription-repair coupling protein [Acinetobacter baumannii AYE]
 gi|215483557|ref|YP_002325776.1| transcription-repair coupling factor [Acinetobacter baumannii
            AB307-0294]
 gi|301345057|ref|ZP_07225798.1| transcription-repair coupling factor [Acinetobacter baumannii AB056]
 gi|301510356|ref|ZP_07235593.1| transcription-repair coupling factor [Acinetobacter baumannii AB058]
 gi|301595346|ref|ZP_07240354.1| transcription-repair coupling factor [Acinetobacter baumannii AB059]
 gi|169149029|emb|CAM86906.1| transcription-repair coupling protein [Acinetobacter baumannii AYE]
 gi|213987269|gb|ACJ57568.1| transcription-repair coupling factor [Acinetobacter baumannii
            AB307-0294]
          Length = 1153

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 152/473 (32%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555  WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613  AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673  SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   N    + E +   L  G + Y++  ++E  +        E    L     + +A
Sbjct: 793  TFV-QENTDASIKEAILRELLRGGQVYFLHNEVETIE-----RAAENIRVLVPE--ARVA 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 965  GEQQSGSMQAIGYS--LYMEMLEKATKAIQQ--GKTPNFDAPLSLTAEINLHI 1013


>gi|332798184|ref|YP_004459683.1| transcription-repair coupling factor [Tepidanaerobacter sp. Re1]
 gi|332695919|gb|AEE90376.1| transcription-repair coupling factor [Tepidanaerobacter sp. Re1]
          Length = 1178

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 139/447 (31%), Positives = 223/447 (49%), Gaps = 19/447 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     + +A ++  L   ++     G   + +    ++     P+  T  Q 
Sbjct: 578  EWNKAKSKAKDSIKQMAEELIKLYATRES--VSGFAFSADSPWQKEFQDMFPYEETPDQL 635

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+++ +DM     M R+L GDVG GKT VA+ A   AV  G Q  ++ P  ILA+QH+
Sbjct: 636  AAIEEVKRDMESPKPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVPTTILAEQHF 695

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  +   + +E I+       ++  L ++  G+  IIIGTH L Q  I++  L L+
Sbjct: 696  HTFAERFKPFPVKIESISRFKSPTEQKHILTKLKTGEIDIIIGTHRLLQKDIKFKDLGLL 755

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV  + K+ Q      VL +TATPIPRTL +   G  D+S I   P  R PI
Sbjct: 756  VVDEEQRFGVSHKEKIKQLKKNVDVLTLTATPIPRTLHMAMSGLRDMSIIETPPEDRFPI 815

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T ++  N    + + +   LS   + Y++  +++           E    L      + 
Sbjct: 816  QTYVVEHNE-SLIRDAIMRELSRNGQVYYVYNRVQTI--------HEEAQKLKRLVPEAR 866

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IA+ HG+M++ + E VM  F      +L+ TT+IE G+D+ + + +I+ +A+  GL+QL+
Sbjct: 867  IAVAHGQMNEDELEEVMLGFYEHDYDVLVCTTIIESGLDIPNVNTLIVTSADRLGLSQLY 926

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR    +   L Y     LS+ +  RLS ++       GF IA +DL+ R  G 
Sbjct: 927  QLRGRVGRSNRQAFAYLTYKKDKVLSEAAEKRLSAIREFTEFGSGFKIALKDLEIRGAGN 986

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ILG +Q G    +     L+  LL  A
Sbjct: 987  ILGAEQHGHMMAIGYD--LYTKLLAAA 1011


>gi|313668421|ref|YP_004048705.1| transcription-repair coupling factor [Neisseria lactamica ST-640]
 gi|313005883|emb|CBN87339.1| transcription-repair coupling factor [Neisseria lactamica 020-06]
          Length = 1164

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 152/453 (33%), Positives = 238/453 (52%), Gaps = 17/453 (3%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  L  R+  +   G    +     Q       +  T+ Q +AI  +++D++Q   M R
Sbjct: 583  ELLNLYARRAAQ--SGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDR 640

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++
Sbjct: 641  LVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVAGLS 700

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                    + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +
Sbjct: 701  RFNNSKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKR 760

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                  +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E + 
Sbjct: 761  LCANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVL 819

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              L  G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  
Sbjct: 820  RELKRGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRD 872

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F      +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL 
Sbjct: 873  FLQQRFNVLLCSTIIETGIDIHNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLT 932

Query: 597  HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
               ++K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+ 
Sbjct: 933  PEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYT 990

Query: 654  SLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             +L+ A +D K    + PDL +  G +  I L+
Sbjct: 991  EMLKQAVRDLKK--GRQPDLDAPLGITTEIKLH 1021


>gi|260776195|ref|ZP_05885090.1| transcription-repair coupling factor [Vibrio coralliilyticus ATCC
            BAA-450]
 gi|260607418|gb|EEX33683.1| transcription-repair coupling factor [Vibrio coralliilyticus ATCC
            BAA-450]
          Length = 1153

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 150/456 (32%), Positives = 236/456 (51%), Gaps = 19/456 (4%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  +  +++ K   G    ++           PF  T  Q  AI  ++ DM Q   M R
Sbjct: 570  ELLDVYAKRELK--PGYKFALDRDQYATFKAGFPFEETDDQSMAINAVMSDMCQAKAMDR 627

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E  +    N  I VE+++
Sbjct: 628  LVCGDVGFGKTEVAMRAAFLATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLS 687

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                   +++ L+ I  G+  +++GTH L  + I++  L L+IVDE+HRFGV+Q+ K+  
Sbjct: 688  RFKTAKEQKQVLQDIEDGKVDLVVGTHKLLSNDIKFKDLGLLIVDEEHRFGVRQKEKMKA 747

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                  +L +TATPIPRTL +   G  D+S I   PA R  IKT +   +    V E + 
Sbjct: 748  MRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQRDD-AVVREAVL 806

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              +  G + Y++  Q+E  +      V      L     + I + HG+M + + E +M+ 
Sbjct: 807  REIMRGGQIYFLHNQVETIE-----KVAADLEKLIPE--ARITVAHGQMRERELERIMND 859

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F +    LL+ TT+IE GIDV  A+ II++ A++ GLAQLHQLRGRVGR    +   LL 
Sbjct: 860  FYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLT 919

Query: 597  HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
              P  ++K++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG          L
Sbjct: 920  PHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSGQI--QSVGFTL 977

Query: 652  HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            +  +LE A +  K    ++P L  +  +   + + L
Sbjct: 978  YMEMLEQAVEALKE--GKEPSLDELLREQTEVEMRL 1011


>gi|254229022|ref|ZP_04922443.1| transcription-repair coupling factor [Vibrio sp. Ex25]
 gi|262394765|ref|YP_003286619.1| transcription-repair coupling factor [Vibrio sp. Ex25]
 gi|151938490|gb|EDN57327.1| transcription-repair coupling factor [Vibrio sp. Ex25]
 gi|262338359|gb|ACY52154.1| transcription-repair coupling factor [Vibrio sp. Ex25]
          Length = 1153

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 150/464 (32%), Positives = 235/464 (50%), Gaps = 19/464 (4%)

Query: 229  AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
                 +A ++  +  +++ K   G    ++           PF  T  Q  AI  +L DM
Sbjct: 562  EKVRDVAAELLDVYAKRELK--PGFKFELDRGQYATFKATFPFEETDDQAMAINAVLSDM 619

Query: 289  SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
             Q   M R++ GDVG GKT VA+ A   A +   Q  ++ P  +LAQQH+E  +    N 
Sbjct: 620  CQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVPTTLLAQQHFENFRDRFANL 679

Query: 349  QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
             I VE+++       ++  L+ +A G+  I++GTH L    I++  L L+IVDE+HRFGV
Sbjct: 680  PIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSDIKFKDLGLLIVDEEHRFGV 739

Query: 409  QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            +Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IKT +      
Sbjct: 740  RQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQREE- 798

Query: 469  DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
              V E +   +  G + Y++  Q+E  +        E    L     + I + HG+M + 
Sbjct: 799  SVVREAVLREIMRGGQVYFLHNQVETIE-----KTAEDLQKLIPE--ARITVAHGQMRER 851

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            + E +M+ F +    +L+ TT+IE GIDV  A+ II++ A++ GLAQLHQLRGRVGR   
Sbjct: 852  ELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQLRGRVGRSHH 911

Query: 589  ISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK 643
             +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG   
Sbjct: 912  QAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSGQI- 970

Query: 644  FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
                   L+  +LE A +  K    ++P L  +  +   + + +
Sbjct: 971  -QSVGFTLYMEMLEQAVQALKE--GKEPSLDELLREQTEVEMRI 1011


>gi|153835235|ref|ZP_01987902.1| transcription-repair coupling factor [Vibrio harveyi HY01]
 gi|148868273|gb|EDL67407.1| transcription-repair coupling factor [Vibrio harveyi HY01]
          Length = 1153

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 151/464 (32%), Positives = 236/464 (50%), Gaps = 19/464 (4%)

Query: 229  AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
                 +A ++  +  +++ K   G    ++           PF  T  Q +AI  +L DM
Sbjct: 562  EKVRDVAAELLDVYAKRELK--PGYKFELDRGQYATFKATFPFEETDDQSTAINAVLSDM 619

Query: 289  SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
             Q   M R++ GDVG GKT VA+ A   A +   Q  ++ P  +LAQQH+E  +    N 
Sbjct: 620  CQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVPTTLLAQQHFENFRDRFANL 679

Query: 349  QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
             I VE+++       ++  L+ +A G+  I++GTH L    I++  L L+IVDE+HRFGV
Sbjct: 680  PIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSDIKFKDLGLLIVDEEHRFGV 739

Query: 409  QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            +Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IKT +      
Sbjct: 740  RQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQRED- 798

Query: 469  DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
              V E +   +  G + Y++  Q+E  +        E    L     + + + HG+M + 
Sbjct: 799  SVVREAVLREIMRGGQVYFLHNQVETIE-----KTAEDLQKLIPE--ARVTVAHGQMRER 851

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            + E +M+ F +    LL+ TT+IE GIDV  A+ II++ A++ GLAQLHQLRGRVGR   
Sbjct: 852  ELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQLRGRVGRSHH 911

Query: 589  ISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK 643
             +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG   
Sbjct: 912  QAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSGQI- 970

Query: 644  FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
                   L+  +LE A +  K    ++P L  +  +   I + +
Sbjct: 971  -QSVGFTLYMEMLEQAVEALKE--GKEPSLDDLLREQTEIEMRI 1011


>gi|20808914|ref|NP_624085.1| transcription-repair coupling factor [Thermoanaerobacter
            tengcongensis MB4]
 gi|20517574|gb|AAM25689.1| Transcription-repair coupling factor - superfamily II helicase
            [Thermoanaerobacter tengcongensis MB4]
          Length = 1169

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 159/559 (28%), Positives = 263/559 (47%), Gaps = 42/559 (7%)

Query: 125  VTGKIKKLKNRIIMVHPHYIFHNSQDV----------NFPLIEAVYSLP-TGLSVDLFKK 173
            + G+ K+ +  + M +   I   ++                 E +  +   G+  D   K
Sbjct: 476  IFGQTKRARKPVKMRNAERIKSFTELEVGSYVVHVNYGIGKYEGIEKIKVDGVIRDYL-K 534

Query: 174  IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAY 230
            I+      L V  E +  DL+QK   P+         NP K       EW    R+    
Sbjct: 535  IVYAGGDVLFVPVEQL--DLVQKYVGPT--------DNPPKLNKLGGGEWIRAKRKAKKA 584

Query: 231  DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
             E LA  +  L  ++Q     G   + +    ++     P+  T+ Q   IK+I +DM +
Sbjct: 585  AEDLAKDLIELYAKRQ--MAKGHAFSPDTPWQKEFEDQFPYEETEDQLRCIKEIKEDMEK 642

Query: 291  KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
               M R+L GDVG GKT VAL A   AV  G Q   + P  ILA QHY    +  +   +
Sbjct: 643  DKPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVAFLCPTTILAYQHYTNFLERFKEFPV 702

Query: 351  IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +E+++       + + ++ +A G   I++GTH L Q+ +++  L L+I+DE+ RFGV  
Sbjct: 703  KIEMLSRFRTPKEQAQIIKGLADGTIDIVVGTHRLLQNDVKFKDLGLLIIDEEQRFGVVH 762

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            + K+ +      VL ++ATPIPRTL ++ +G  D+S +   P  R P++T ++  N  + 
Sbjct: 763  KEKIKKLKENIDVLTLSATPIPRTLHMSLIGIRDMSILENPPEDRFPVETYVVEFNE-EL 821

Query: 471  VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            + + +   +  G + Y++  +++  ++            L  +    IA+ HG+M +   
Sbjct: 822  IKDAILREVGRGGQVYFVYNRVQGIEKMANF-----IKELVPN--CRIAVAHGQMEENKL 874

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E VM  F  G   +L+ TT+IE G+D+ + + II+ +A+  GLAQL+QLRGRVGR   ++
Sbjct: 875  EQVMVDFLKGEYDVLVTTTIIETGLDIPNVNTIIVYDADKLGLAQLYQLRGRVGRSNRLA 934

Query: 591  SCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
                 Y     LS+ +  RL  +K       GF IA  DL+ R  G +LG +Q G    +
Sbjct: 935  YAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHGHIDAV 994

Query: 646  IAQPELHDSLLEIARKDAK 664
                 L   LLE A ++ K
Sbjct: 995  GYDLYL--KLLEEAIRNLK 1011


>gi|168183619|ref|ZP_02618283.1| transcription-repair coupling factor [Clostridium botulinum Bf]
 gi|237797000|ref|YP_002864552.1| transcription-repair coupling factor [Clostridium botulinum Ba4 str.
            657]
 gi|182673263|gb|EDT85224.1| transcription-repair coupling factor [Clostridium botulinum Bf]
 gi|229263299|gb|ACQ54332.1| transcription-repair coupling factor [Clostridium botulinum Ba4 str.
            657]
          Length = 1168

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 147/465 (31%), Positives = 237/465 (50%), Gaps = 19/465 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT    +     E +A  +  L          G   + +    ++     P+  T  Q 
Sbjct: 573  EWTKTKNKVKKSIEEIAEDLVKLYA--IRATLKGYKYSDDTVWQKQFEEEFPYEETPDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+DI +DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 631  LAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQHY 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+   +  I V++I+     + ++  ++ I  G   I+IGTH + Q  I++  L L+
Sbjct: 691  NNFKQRFSDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  DIS I   P  R P+
Sbjct: 751  IIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T ++  N    + + +   +S G + Y++  ++E        S+ E  + + +      
Sbjct: 811  QTYVVEYND-QLIRDSILREISRGGQIYFVYNRVE--------SIHEMASYISKLVPEGR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M + + E+V+  F      +LIATT+IE G+D+ + + +II +A+  GL+QL+
Sbjct: 862  VQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++ C L Y     L++ +  RL  +K+      GF IA +DL+ R  G 
Sbjct: 922  QLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALKDLEIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            ++G  Q G    +     L+  +LE   K  +  + ++P  TSV 
Sbjct: 982  MMGSAQHGHMASIGYD--LYCRMLEDTIKLVRGDIDKEPVETSVE 1024


>gi|330961341|gb|EGH61601.1| transcription-repair coupling factor [Pseudomonas syringae pv.
            maculicola str. ES4326]
          Length = 1150

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 235/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q++
Sbjct: 553  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFPFEETPDQQT 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 611  TIEAVRADMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYN 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI
Sbjct: 671  SFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 731  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   + E L   L  G + Y++   ++  +             L     + I 
Sbjct: 791  TFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 843  IGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 963  GDGQSGQI--QAVGFTLYMEMLERAVKAIRK--GEQPNLDQPLGGGPEINLRV 1011


>gi|322807864|emb|CBZ05439.1| transcription-repair coupling factor [Clostridium botulinum H04402
            065]
          Length = 1168

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 147/465 (31%), Positives = 237/465 (50%), Gaps = 19/465 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT    +     E +A  +  L          G   + +    ++     P+  T  Q 
Sbjct: 573  EWTKTKNKVKKSIEEIAEDLVKLYA--IRASLKGYKYSDDTVWQKQFEEEFPYEETPDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+DI +DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 631  LAIEDIKKDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQHY 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+   +  I V++I+     + ++  ++ I  G   I+IGTH + Q  I++  L L+
Sbjct: 691  NNFKQRFSDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  DIS I   P  R P+
Sbjct: 751  IIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T ++  N    + + +   +S G + Y++  ++E        S+ E  + + +      
Sbjct: 811  QTYVVEYND-QLIRDSILREISRGGQIYFVYNRVE--------SIHEMASYISKLVPEGR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M + + E+V+  F      +LIATT+IE G+D+ + + +II +A+  GL+QL+
Sbjct: 862  VQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++ C L Y     L++ +  RL  +K+      GF IA +DL+ R  G 
Sbjct: 922  QLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALKDLEIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            ++G  Q G    +     L+  +LE   K  +  + ++P  TSV 
Sbjct: 982  MMGSAQHGHMASIGYD--LYCRMLEDTIKLVRGDIDKEPVETSVE 1024


>gi|189350744|ref|YP_001946372.1| transcription-repair coupling factor [Burkholderia multivorans ATCC
            17616]
 gi|189334766|dbj|BAG43836.1| transcription-repair coupling factor [Burkholderia multivorans ATCC
            17616]
          Length = 1185

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 232/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++     ++    +  K   +  F  T  Q 
Sbjct: 582  QWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYV--KFAESFGFEETPDQA 639

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 640  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 699

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 700  QTFADRFADWPVRIVELSRFKTTKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 759

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 760  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 819

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 820  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEELVPE--ARI 871

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 872  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 931

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 932  LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 991

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 992  LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1040


>gi|330973230|gb|EGH73296.1| transcription-repair coupling factor [Pseudomonas syringae pv. aceris
            str. M302273PT]
          Length = 1150

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q++
Sbjct: 553  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFPFEETPDQQT 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I  +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 611  TIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYN 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI
Sbjct: 671  SFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 731  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   + E L   L  G + Y++   ++  +             L     + I 
Sbjct: 791  TFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 843  IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 963  GDGQSGQI--QAVGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 1011


>gi|251779351|ref|ZP_04822271.1| transcription-repair coupling factor [Clostridium botulinum E1 str.
            'BoNT E Beluga']
 gi|243083666|gb|EES49556.1| transcription-repair coupling factor [Clostridium botulinum E1 str.
            'BoNT E Beluga']
          Length = 1167

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 233/458 (50%), Gaps = 17/458 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +       +A  +  L   +      G   + + +  ++     PF  T  Q 
Sbjct: 575  EWQKAKAKVRKSINDIAEDLVKLYATRS--TIKGHKFSKDTQWQRQFEDEFPFEETPDQL 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +++++I +DM     M R+L GDVG GKT VAL A   AV  G Q  ++ P  ILA+QHY
Sbjct: 633  TSLEEIKKDMESDKVMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVALLVPTTILAEQHY 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +KK   +  I +++++       ++  ++R+  G   I++GTH L    IQ+  L L+
Sbjct: 693  KNMKKRFSDFPIKIDMVSRFRTAKEQKATIQRLKEGNVDILVGTHKLVSKDIQFKDLGLL 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R P+
Sbjct: 753  IVDEEQRFGVSQKEKIKNIKKNVDVLTLSATPIPRTLHMSLTGARDISVIETAPEERYPV 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + + +   +  G + Y++  ++E+  E            L     S +
Sbjct: 813  QTYVVEQND-QLIRDAILREIGRGGQVYFVYNRVEDINEMARY-----VQELVPE--SKV 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++ HG+M++   E  M SF +    +L+ TT+IE GID+ + + II+ N++  GL+QL+Q
Sbjct: 865  SVTHGQMTERQLEKEMLSFMDQESNVLVCTTIIETGIDIPNVNTIIVYNSDKMGLSQLYQ 924

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+   LLY     L++ +  RL  LK+      GF IA  DL+ R  G I
Sbjct: 925  LRGRVGRSNRIAYAYLLYAKDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNI 984

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            +G  Q G    +     L+  +LE   K  K  ++++P
Sbjct: 985  MGSSQHGHMASVGYD--LYCRMLEDTIKIIKGEISKEP 1020


>gi|227888873|ref|ZP_04006678.1| transcription-repair coupling factor [Lactobacillus johnsonii ATCC
           33200]
 gi|227850566|gb|EEJ60652.1| transcription-repair coupling factor [Lactobacillus johnsonii ATCC
           33200]
          Length = 1165

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 232/448 (51%), Gaps = 17/448 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   +   +  E +A  +  L  +++ +   G   + +  + ++     P+  T  Q 
Sbjct: 563 EWTKTKKRVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQKEFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM     M R+L GDVG GKT VAL A   A+  G Q   +AP  ILAQQH+
Sbjct: 621 RSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E ++   ++  +   +++        ++ +E +  G+  +++GTH L    +Q+  L L+
Sbjct: 681 ETMQDRFKDFPVNCALLSRFQTPTEVKEIVEGVKSGKIDMVVGTHRLLSKDVQFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IIDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++       V E +   +    + +++  +I++  +   +        L     + I
Sbjct: 801 QTYVME-EMPSIVREAVLREMKRNGQVFFLHNRIDDIDKVVSQ-----LEELIPE--AKI 852

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +I+E+A+H+GL+QL+Q
Sbjct: 853 EYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYGLSQLYQ 912

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGR+GR   ++    LY P   L++    RLS +++      GF IA  DL  R  G +
Sbjct: 913 LRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGAGNM 972

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARK 661
           LG +Q G    +     L+  +L+ A K
Sbjct: 973 LGKQQHGFIDSVGYD--LYAQMLDEAIK 998


>gi|254252138|ref|ZP_04945456.1| Transcription-repair coupling factor [Burkholderia dolosa AUO158]
 gi|124894747|gb|EAY68627.1| Transcription-repair coupling factor [Burkholderia dolosa AUO158]
          Length = 1164

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 232/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++     ++    +  K   +  F  T  Q 
Sbjct: 561  QWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYV--KFAESFGFEETPDQA 618

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 619  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 678

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 679  QTFVDRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 738

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 739  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 798

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 799  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEELVPE--ARI 850

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 851  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 910

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 911  LRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 970

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 971  LGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1019


>gi|66045137|ref|YP_234978.1| transcription-repair coupling factor [Pseudomonas syringae pv.
            syringae B728a]
 gi|63255844|gb|AAY36940.1| Transcription-repair coupling factor [Pseudomonas syringae pv.
            syringae B728a]
          Length = 1150

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q++
Sbjct: 553  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFPFEETPDQQT 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I  +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 611  TIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYN 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI
Sbjct: 671  SFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 731  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   + E L   L  G + Y++   ++  +             L     + I 
Sbjct: 791  TFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 843  IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 963  GDGQSGQI--QAVGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 1011


>gi|299136367|ref|ZP_07029551.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX8]
 gi|298602491|gb|EFI58645.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX8]
          Length = 1301

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 170/515 (33%), Positives = 262/515 (50%), Gaps = 27/515 (5%)

Query: 192  DLLQKKSFPSIAEA--FNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            DL+QK        A   N + NP  AK       A + +A +        LL +  Q K 
Sbjct: 586  DLIQKYRSTETGPAPQLNRLGNPAWAKTKARVKKAMQDMAEE--------LLKLYAQRKA 637

Query: 250  EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
             +G   + +  +  +      F+ T  Q  AI DI  DM     M R+L GDVG GKT V
Sbjct: 638  AVGTAFSPDTNMQHEFEDAFDFNETDDQLRAIADIKADMESTQPMDRLLCGDVGYGKTEV 697

Query: 310  ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            A+ A   AV+ G Q  ++ P  +L  QH+E  K+      ++VE+I+       ++  LE
Sbjct: 698  AMRAAFKAVQDGKQVAVLTPTTVLCFQHFESFKRRFSKFPVVVEMISRFRTAKEKKDVLE 757

Query: 370  RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            R A G+  I+IGTHA+   S+Q+  L L++VDE+ RFGV+ + +L Q   A  VL M+AT
Sbjct: 758  RTAQGKVDILIGTHAILSQSLQFQDLGLLVVDEEQRFGVRHKERLKQMRAAIDVLSMSAT 817

Query: 430  PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            PIPRTL ++ +G  D+S I   P  R  I+TV+   +    +   ++V L  G + Y++ 
Sbjct: 818  PIPRTLNMSLVGLRDMSVIETPPKDRMAIQTVVAKFDE-KLIRTAVEVELERGGQTYFVH 876

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             ++E   E            L     + + + HG+M + + E VM +F +G   +L AT+
Sbjct: 877  NRVETIYELAS-----MIRELVP--QARVVVGHGQMPEAELERVMLAFMDGEYDVLCATS 929

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
            +IE G+D+  A+ III  A+  GL++L+QLRGRVGR    +   LL  P   L++ +  R
Sbjct: 930  IIENGLDISKANTIIINRADRHGLSELYQLRGRVGRSNRRAYAYLLIPPEQQLTEIARRR 989

Query: 608  LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            L+ LK   D   GF IA  DL+ R  G +LG +QSG  + +    E++ ++LE A    K
Sbjct: 990  LAALKEFSDLGAGFKIAALDLELRGAGNMLGGEQSGHIEAI--GFEMYTTMLEEAVSRLK 1047

Query: 665  -HILTQDPDLTSVRGQSIRI-LLYLYQYNEAFQFI 697
                 + P +T   G S+RI   Y+ + N+  +  
Sbjct: 1048 GEGREERPQVTVNLGISLRIDDAYIAEENQRLRMY 1082


>gi|110799729|ref|YP_697172.1| transcription-repair coupling factor [Clostridium perfringens ATCC
            13124]
 gi|110674376|gb|ABG83363.1| transcription-repair coupling factor [Clostridium perfringens ATCC
            13124]
          Length = 1162

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 230/459 (50%), Gaps = 19/459 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +       +AG +  L    +     G   + + +  ++     P+  T  Q 
Sbjct: 567  EWQKAKAKVRKSINDIAGDLVKLYA--ERSTVKGYKFSKDTQWQKQFEDEFPYEETPDQL 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QHY
Sbjct: 625  SAIEDIKSDMETNKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +KK      I +++I+    +  + + L+ +  G   I+IGTH L    IQ+  L L+
Sbjct: 685  KNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R PI
Sbjct: 745  IVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYPI 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T ++  N    + + +   ++   + Y++  ++E        S+ E  N + E      
Sbjct: 805  QTYVVEQND-QLIRDAILREINRDGQVYFVHNRVE--------SIQEVANYIQELVPECK 855

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              +IHG+M++   E+ M  F      +L+ T++IE GID+ + + +I+ +A+  GL+QL+
Sbjct: 856  ATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQLY 915

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR  +++    LY     L++ +  RL  LK+      GF IA  DL+ R  G 
Sbjct: 916  QLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGN 975

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ++G  Q G    +     L+  +LE   K  K  + ++P
Sbjct: 976  MMGSAQHGHMAAIGYD--LYCRMLEDTIKIVKGEIEREP 1012


>gi|312959638|ref|ZP_07774155.1| transcription-repair coupling factor [Pseudomonas fluorescens WH6]
 gi|311286355|gb|EFQ64919.1| transcription-repair coupling factor [Pseudomonas fluorescens WH6]
          Length = 1149

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                     F  T  Q++
Sbjct: 552  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFAFEETPDQQT 609

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 610  TIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYN 669

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L  D ++   L LVI
Sbjct: 670  SFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLSDDVKIKNLGLVI 729

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 730  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 789

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   V E L   L  G + Y++   ++  +             L     + IA
Sbjct: 790  TFVMEQNK-STVKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIA 841

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 842  IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 901

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 902  RGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 961

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L L
Sbjct: 962  GDGQSGQI--QAVGFTLYMEMLERAVKAIRK--GEQPNLDQPLGGGPEINLRL 1010


>gi|28209962|ref|NP_780906.1| transcription-repair coupling factor [Clostridium tetani E88]
 gi|28202397|gb|AAO34843.1| transcription-repair coupling factor [Clostridium tetani E88]
          Length = 1030

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 144/460 (31%), Positives = 233/460 (50%), Gaps = 17/460 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            + EWT    +     E +A  +  L   +      G   + +    ++     P   T  
Sbjct: 579  NAEWTKTKNKAKKSIEEIAEDLVNLYAVRS--TLKGYKFSKDTVWQRQFEEEFPHEETPD 636

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            Q +AI++I  DM     M R+L GDVG GKT VAL A   +V  G Q   + P  ILAQQ
Sbjct: 637  QITAIEEIKNDMQSNRTMDRLLCGDVGYGKTEVALRAAFKSVMDGKQVAFLVPTTILAQQ 696

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            HY  + K   +  I +E+++     A +   ++ +  G   I+IGTH + Q  +Q+  L 
Sbjct: 697  HYNNLLKRFSDFPINIEMVSRFRTSAQQNATMKALKEGNIDILIGTHRILQKDVQFKDLG 756

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+++DE+ RFGV+ + K+ +      VL +TATPIPRTL ++ +G  DIS I   P  R 
Sbjct: 757  LLVIDEEQRFGVKHKEKIKEFKKNVDVLTLTATPIPRTLHMSLVGVRDISIIETPPEDRY 816

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            PI+T ++  N    + + +   L+ G + Y++  ++E  KE          + L     +
Sbjct: 817  PIQTYVVEYND-QLIRDAILRELNRGGQIYFVYNRVENIKEIATH-----VSKLVPE--A 868

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + I HG+M + + E V+  F N    +L+ATT+IE G+D+ + + +II +++  GL+QL
Sbjct: 869  KVGIAHGQMKERELEKVVMDFMNKEHDILVATTIIETGMDIQNVNTMIIYDSDKMGLSQL 928

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
            +QLRGRVGR   ++ C L Y     L++ +  RL  +K       GF IA +DL+ R  G
Sbjct: 929  YQLRGRVGRSSRMAYCYLTYKKDKILTEVAEKRLKAIKEFTELGSGFKIALKDLEIRGAG 988

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
             ++G  Q G    +     L+  +LE   K+ K    ++P
Sbjct: 989  NMMGSSQHGHMASIGYD--LYCKMLEDTIKEKKGERKREP 1026


>gi|330878592|gb|EGH12741.1| transcription-repair coupling factor [Pseudomonas syringae pv.
            morsprunorum str. M302280PT]
          Length = 1150

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 235/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q++
Sbjct: 553  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFPFEETPDQQT 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 611  TIEAVRADMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYN 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI
Sbjct: 671  SFRDRFADWPVTVEVMSRFKSAKEVSAAVANLAEGKIDIVIGTHKLLQDDVKIKNLGLVI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 731  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   + E L   L  G + Y++   ++  +             L     + I 
Sbjct: 791  TFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 843  IGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPPRKQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 963  GDGQSGQI--QAVGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 1011


>gi|254508504|ref|ZP_05120622.1| transcription-repair coupling factor [Vibrio parahaemolyticus 16]
 gi|219548529|gb|EED25536.1| transcription-repair coupling factor [Vibrio parahaemolyticus 16]
          Length = 1153

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 149/464 (32%), Positives = 241/464 (51%), Gaps = 19/464 (4%)

Query: 229  AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
                 +A ++  +  +++ K   G    ++           PF  T  Q+ AI  ++ DM
Sbjct: 562  EKVRDVAAELLDVYAKRELK--PGYKFELDRGQYATFKAGFPFEETDDQKMAINAVMSDM 619

Query: 289  SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
             Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E  +    N 
Sbjct: 620  CQAKAMDRLVCGDVGFGKTEVAMRAAFLATDNGKQVAVLVPTTLLAQQHFENFRDRFANL 679

Query: 349  QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
             I VE+++       +++ L+ I  G+  +++GTH L  + I++  L L+IVDE+HRFGV
Sbjct: 680  PIRVEVLSRFKTAKEQKQVLQDIEEGKVDLVVGTHKLLSNDIKFKDLGLLIVDEEHRFGV 739

Query: 409  QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            +Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IKT +   +  
Sbjct: 740  RQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSDD- 798

Query: 469  DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
              + E +   +  G + Y++  Q+E  +      V      L     + + + HG+M + 
Sbjct: 799  AVIREAVLREIMRGGQVYFLHNQVETIE-----KVAADLEKLIPE--ARVTVAHGQMRER 851

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            + E +M+ F +    LL+ TT+IE GIDV  A+ II++ A++ GLAQLHQLRGRVGR   
Sbjct: 852  ELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQLRGRVGRSHH 911

Query: 589  ISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK 643
             +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG  +
Sbjct: 912  QAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSGQIQ 971

Query: 644  FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
             +     L+  +LE A +  K    ++P L  +  +   + + L
Sbjct: 972  SI--GFTLYMEMLEQAVEALKE--GKEPSLDDLLREQTEVEMRL 1011


>gi|217421496|ref|ZP_03453000.1| transcription-repair coupling factor [Burkholderia pseudomallei 576]
 gi|217395238|gb|EEC35256.1| transcription-repair coupling factor [Burkholderia pseudomallei 576]
          Length = 1189

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 231/473 (48%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++       ++ +   K   +  F  T  Q 
Sbjct: 584  QWERAKRRAAQQIRDTAAELLNLYARRAAREG--HAFGLDPRDYVKFADSFGFEETPDQA 641

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 642  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 701

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 702  QTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 761

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 762  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 821

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 822  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEELVPE--ARI 873

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 874  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 933

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 934  LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 993

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 994  LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1042


>gi|83720153|ref|YP_442612.1| transcription-repair coupling factor [Burkholderia thailandensis
            E264]
 gi|83653978|gb|ABC38041.1| transcription-repair coupling factor [Burkholderia thailandensis
            E264]
          Length = 1217

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 232/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++     ++    +  K   +  F  T  Q 
Sbjct: 612  QWERAKRRAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYV--KFADSFGFEETPDQA 669

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 670  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 729

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+++I  G   I+IGTH L    +Q+ +L LV
Sbjct: 730  QTFIDRFADWPVKIVELSRFKSTKEVNAAIQQINDGSVDIVIGTHKLLSSDVQFKRLGLV 789

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 790  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 849

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 850  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRRAMLEELVPE--ARI 901

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 902  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 961

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 962  LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 1021

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 1022 LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1070


>gi|78066724|ref|YP_369493.1| transcription-repair coupling factor [Burkholderia sp. 383]
 gi|77967469|gb|ABB08849.1| transcription-repair coupling factor [Burkholderia sp. 383]
          Length = 1156

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 154/473 (32%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++      +++ +   K   +  F  T  Q 
Sbjct: 553  QWERAKRKAAQQIRDTAAELLNLYARRAAREG--HAFSLDPRDYVKFAESFGFEETPDQA 610

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 611  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLSPTTLLAEQHT 670

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 671  QTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 730

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 731  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 790

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +      +L     + I
Sbjct: 791  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEALVPE--ARI 842

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  ++ FGLAQLHQ
Sbjct: 843  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRSDKFGLAQLHQ 902

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 903  LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 962

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 963  LGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1011


>gi|320324788|gb|EFW80860.1| transcription-repair coupling factor [Pseudomonas syringae pv.
            glycinea str. B076]
 gi|320329153|gb|EFW85150.1| transcription-repair coupling factor [Pseudomonas syringae pv.
            glycinea str. race 4]
          Length = 1150

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q++
Sbjct: 553  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFPFEETPDQQT 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I  +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 611  TIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYN 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI
Sbjct: 671  SFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 731  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   + E L   L  G + Y++   ++  +             L     + I 
Sbjct: 791  TFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 843  IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 963  GDGQSGQI--QAVGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 1011


>gi|126453184|ref|YP_001066662.1| transcription-repair coupling factor [Burkholderia pseudomallei
            1106a]
 gi|167846208|ref|ZP_02471716.1| transcription-repair coupling factor [Burkholderia pseudomallei
            B7210]
 gi|167911421|ref|ZP_02498512.1| transcription-repair coupling factor [Burkholderia pseudomallei 112]
 gi|242317637|ref|ZP_04816653.1| transcription-repair coupling factor [Burkholderia pseudomallei
            1106b]
 gi|254198050|ref|ZP_04904472.1| transcription-repair coupling factor [Burkholderia pseudomallei S13]
 gi|126226826|gb|ABN90366.1| transcription-repair coupling factor [Burkholderia pseudomallei
            1106a]
 gi|169654791|gb|EDS87484.1| transcription-repair coupling factor [Burkholderia pseudomallei S13]
 gi|242140876|gb|EES27278.1| transcription-repair coupling factor [Burkholderia pseudomallei
            1106b]
          Length = 1189

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 231/473 (48%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++       ++ +   K   +  F  T  Q 
Sbjct: 584  QWERAKRRAAQQIRDTAAELLNLYARRAAREG--HAFGLDPRDYVKFADSFGFEETPDQA 641

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 642  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 701

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 702  QTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 761

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 762  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 821

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 822  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEELVPE--ARI 873

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 874  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 933

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 934  LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 993

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 994  LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1042


>gi|238897365|ref|YP_002923042.1| transcription-repair ATP-dependent coupling factor [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465120|gb|ACQ66894.1| transcription-repair ATP-dependent coupling factor [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 1151

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 158/461 (34%), Positives = 243/461 (52%), Gaps = 19/461 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           WT   ++ L     +A ++  +    Q   + G     + +  Q    + PF  T  QE 
Sbjct: 551 WTKACKKTLEKVRDVAAELLGIY--SQRAAKPGFSFKKDSEQYQLFCESFPFETTPDQEQ 608

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DMSQ   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 609 AIHAVLNDMSQPLAMDRLVCGDVGFGKTEVAMRAAFLAVINHKQVAVLVPTTLLAQQHFD 668

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    +  I +E+++       +++ L+++A G+  I+IGTH L ++ + +  L L+I
Sbjct: 669 NFRDRFAHWPIQIEMLSRFRTAKEQKQILQQVAEGKLDILIGTHKLLKNDLCWKDLGLLI 728

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++    T   +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 729 VDEEHRFGVRHKERIKAIRTDVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLSVK 788

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +    + E +   +  G + Y++  ++E  +        E    L     + I 
Sbjct: 789 TFVREYDSF-LIKEAILREILRGGQVYYLYNEVETIE-----KTYETLKKLVPE--ARIT 840

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M + D E VM+ F +    LL+ TT+IE GID+ +A+ IIIE A HFGLAQLHQL
Sbjct: 841 LAHGQMRERDLERVMNDFHHQRFNLLVCTTIIETGIDIANANTIIIEKANHFGLAQLHQL 900

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL  PP  ++ ++  RL V+ + ED   GF +A  DL+ R  GE+L
Sbjct: 901 RGRVGRSHHQAYAYLLTPPPKAITNDAKKRLEVITSLEDLGSGFALATHDLEIRGAGELL 960

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           G  QSG          L+  +LE A +  K    +DP L +
Sbjct: 961 GENQSGQIN--AVGFSLYMEMLENAVEAFKK--GKDPSLEA 997


>gi|71736642|ref|YP_274082.1| transcription-repair coupling factor [Pseudomonas syringae pv.
            phaseolicola 1448A]
 gi|71557195|gb|AAZ36406.1| transcription-repair coupling factor [Pseudomonas syringae pv.
            phaseolicola 1448A]
          Length = 1150

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q++
Sbjct: 553  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFPFEETPDQQT 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I  +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 611  TIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYN 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI
Sbjct: 671  SFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 731  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   + E L   L  G + Y++   ++  +             L     + I 
Sbjct: 791  TFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 843  IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 963  GDGQSGQI--QAVGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 1011


>gi|253580889|ref|ZP_04858151.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847731|gb|EES75699.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1107

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 154/486 (31%), Positives = 246/486 (50%), Gaps = 18/486 (3%)

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
           +I    L      S A+A        K    EW     +     + +A ++  L   +Q 
Sbjct: 484 YIPATQLDCLQKYSGADASKAPKL-NKLGTQEWNKTKSKVRGAVKNIAKELVELYAVRQE 542

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           K+        +    ++     P+  T+ Q SAI+D  +DM     M R++ GDVG GKT
Sbjct: 543 KEG--YVCGPDTVWQREFEEMFPYEETEDQLSAIEDAKRDMESTRIMDRLICGDVGYGKT 600

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VAL A    V+   Q   +AP  ILAQQ Y    +  +   + VE++      A ++KA
Sbjct: 601 EVALRAAFKEVQESRQVAYLAPTTILAQQIYNTFVQRMKEFPVRVELLCRFRTPAQQKKA 660

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           +E +  GQ  +IIGTH +    +Q+  L L+IVDE+ RFGV  + K+ Q      VL +T
Sbjct: 661 IEDLKKGQVDVIIGTHRILSKDVQFKNLGLLIVDEEQRFGVTHKEKIKQLKKDVDVLTLT 720

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           ATPIPRTL ++ +G  D+S + E P  R PI+T ++  +  + V E +   L  G + Y+
Sbjct: 721 ATPIPRTLHMSLIGIRDMSVLEEPPMDRMPIQTYVMEYDE-ETVREAINRELRRGGQVYY 779

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +  ++ +  +        R   L     + +   HG+MS+ + E+VM SF NG   +L++
Sbjct: 780 VYNRVTDIADVAL-----RIAKLVPD--ARVDFAHGQMSERELENVMYSFVNGDIDVLVS 832

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605
           TT+IE G+D+ + + +II +++ +GL+QL+QLRGR+GR    +   L+Y     L + + 
Sbjct: 833 TTIIETGLDISNVNTMIIHDSDRYGLSQLYQLRGRIGRSNRTAYAFLMYRKNVMLKETAE 892

Query: 606 TRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            RL+ ++   D   GF IA  DL+ R  G +LG +Q G    +     L+  +L  A K+
Sbjct: 893 KRLAAIREYTDLGSGFKIAMRDLELRGAGNLLGAQQHGHMNAVGYD--LYCKMLNEAVKE 950

Query: 663 AKHILT 668
           AK I T
Sbjct: 951 AKGIHT 956


>gi|53719711|ref|YP_108697.1| transcription-repair coupling factor [Burkholderia pseudomallei
            K96243]
 gi|76810493|ref|YP_333905.1| transcription-repair coupling factor [Burkholderia pseudomallei
            1710b]
 gi|126438362|ref|YP_001059391.1| transcription-repair coupling factor [Burkholderia pseudomallei 668]
 gi|134277056|ref|ZP_01763771.1| transcription-repair coupling factor [Burkholderia pseudomallei 305]
 gi|167720072|ref|ZP_02403308.1| transcription-repair coupling factor [Burkholderia pseudomallei DM98]
 gi|167739084|ref|ZP_02411858.1| transcription-repair coupling factor [Burkholderia pseudomallei 14]
 gi|167824679|ref|ZP_02456150.1| transcription-repair coupling factor [Burkholderia pseudomallei 9]
 gi|167903188|ref|ZP_02490393.1| transcription-repair coupling factor [Burkholderia pseudomallei NCTC
            13177]
 gi|226196247|ref|ZP_03791831.1| transcription-repair coupling factor [Burkholderia pseudomallei
            Pakistan 9]
 gi|237812718|ref|YP_002897169.1| transcription-repair coupling factor [Burkholderia pseudomallei
            MSHR346]
 gi|254179398|ref|ZP_04885997.1| transcription-repair coupling factor [Burkholderia pseudomallei 1655]
 gi|254189215|ref|ZP_04895726.1| transcription-repair coupling factor [Burkholderia pseudomallei
            Pasteur 52237]
 gi|254258111|ref|ZP_04949165.1| transcription-repair coupling factor [Burkholderia pseudomallei
            1710a]
 gi|52210125|emb|CAH36103.1| transcription-repair coupling factor [Burkholderia pseudomallei
            K96243]
 gi|76579946|gb|ABA49421.1| transcription-repair coupling factor [Burkholderia pseudomallei
            1710b]
 gi|126217855|gb|ABN81361.1| transcription-repair coupling factor [Burkholderia pseudomallei 668]
 gi|134250706|gb|EBA50785.1| transcription-repair coupling factor [Burkholderia pseudomallei 305]
 gi|157936894|gb|EDO92564.1| transcription-repair coupling factor [Burkholderia pseudomallei
            Pasteur 52237]
 gi|184209938|gb|EDU06981.1| transcription-repair coupling factor [Burkholderia pseudomallei 1655]
 gi|225931703|gb|EEH27706.1| transcription-repair coupling factor [Burkholderia pseudomallei
            Pakistan 9]
 gi|237506667|gb|ACQ98985.1| transcription-repair coupling factor [Burkholderia pseudomallei
            MSHR346]
 gi|254216800|gb|EET06184.1| transcription-repair coupling factor [Burkholderia pseudomallei
            1710a]
          Length = 1189

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 231/473 (48%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++       ++ +   K   +  F  T  Q 
Sbjct: 584  QWERAKRRAAQQIRDTAAELLNLYARRAAREG--HAFGLDPRDYVKFADSFGFEETPDQA 641

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 642  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 701

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 702  QTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 761

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 762  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 821

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 822  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEELVPE--ARI 873

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 874  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 933

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 934  LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 993

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 994  LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1042


>gi|42518364|ref|NP_964294.1| transcription-repair coupling factor [Lactobacillus johnsonii NCC
           533]
 gi|41582649|gb|AAS08260.1| transcription-repair coupling factor [Lactobacillus johnsonii NCC
           533]
          Length = 1165

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 136/448 (30%), Positives = 233/448 (52%), Gaps = 17/448 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   +   +  E +A  +  L  +++ +   G   + +  + ++     P+  T  Q 
Sbjct: 563 EWTKTKKRVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQKEFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM     M R+L GDVG GKT VAL A   A+  G Q   +AP  ILAQQH+
Sbjct: 621 RSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E ++   ++  +   +++     A  ++ +E +  G+  +++GTH L    +Q+  L L+
Sbjct: 681 ETMQDRFKDFPVNCALLSRFQTPAEVKEIVEGVKSGKIDMVVGTHRLLSKDVQFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IIDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++       V E +   +    + +++  +I++  +   +        L     + I
Sbjct: 801 QTYVME-EMPSIVREAVLREMKRNGQVFFLHNRIDDIDKVVSQ-----LEELIPE--AKI 852

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +I+E+A+H+GL+QL+Q
Sbjct: 853 EYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYGLSQLYQ 912

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGR+GR   ++    LY P   L++    RLS +++      GF IA  DL  R  G +
Sbjct: 913 LRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGAGNM 972

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARK 661
           LG +Q G    +     L+  +L+ A K
Sbjct: 973 LGKQQHGFIDSVGYD--LYAQMLDEAIK 998


>gi|323496023|ref|ZP_08101086.1| transcription-repair coupling factor [Vibrio sinaloensis DSM 21326]
 gi|323318914|gb|EGA71862.1| transcription-repair coupling factor [Vibrio sinaloensis DSM 21326]
          Length = 1154

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 150/464 (32%), Positives = 241/464 (51%), Gaps = 19/464 (4%)

Query: 229  AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
                 +A ++  +  +++ K   G    ++           PF  T  Q+ AI  ++ DM
Sbjct: 562  EKVRDVAAELLDVYAKRELK--PGYKFELDRGQYATFKAGFPFEETDDQKIAINAVMSDM 619

Query: 289  SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
             Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E  +    N 
Sbjct: 620  CQAKAMDRLVCGDVGFGKTEVAMRAAFLATDNGKQVAVLVPTTLLAQQHFENFRDRFANL 679

Query: 349  QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
             I VE+++       +++ L+ I  G+  +++GTH L  + I++  L L+IVDE+HRFGV
Sbjct: 680  PIRVEVLSRFKTAKEQKQVLQDIEDGKVDLVVGTHKLLSNDIKFKDLGLLIVDEEHRFGV 739

Query: 409  QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            +Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IKT +   +  
Sbjct: 740  RQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSDD- 798

Query: 469  DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
              V E +   +  G + Y++  Q++  +      V      L     + I + HG+M + 
Sbjct: 799  AVVREAVLREIMRGGQVYFLHNQVDTIE-----KVAADLEKLIPE--ARITVAHGQMRER 851

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            + E +M+ F +    LL+ TT+IE GIDV  A+ II++ A++ GLAQLHQLRGRVGR   
Sbjct: 852  ELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQLRGRVGRSHH 911

Query: 589  ISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK 643
             +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG  +
Sbjct: 912  QAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSGQIQ 971

Query: 644  FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
             +     L+  +LE A +  K    ++P L  +  +   + + L
Sbjct: 972  SI--GFTLYMEMLEQAVEALKE--GKEPSLDDLLREQTEVEMRL 1011


>gi|182624347|ref|ZP_02952132.1| transcription-repair coupling factor [Clostridium perfringens D str.
            JGS1721]
 gi|177910565|gb|EDT72938.1| transcription-repair coupling factor [Clostridium perfringens D str.
            JGS1721]
          Length = 1168

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 230/459 (50%), Gaps = 19/459 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +       +AG +  L    +     G   + + +  ++     P+  T  Q 
Sbjct: 573  EWQKAKAKVRKSINDIAGDLVKLYA--ERSTVKGYKFSKDTQWQKQFEDEFPYEETPDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QHY
Sbjct: 631  SAIEDIKSDMEANKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQHY 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +KK      I +++I+    +  + + L+ +  G   I+IGTH L    IQ+  L L+
Sbjct: 691  KNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R PI
Sbjct: 751  IVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYPI 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T ++  N    + + +   ++   + Y++  ++E        S+ E  N + E      
Sbjct: 811  QTYVVEQND-QLIRDAILREINRDGQVYFVHNRVE--------SIQEVANYIQELVPECK 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              +IHG+M++   E+ M  F      +L+ T++IE GID+ + + +I+ +A+  GL+QL+
Sbjct: 862  ATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR  +++    LY     L++ +  RL  LK+      GF IA  DL+ R  G 
Sbjct: 922  QLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ++G  Q G    +     L+  +LE   K  K  + ++P
Sbjct: 982  MMGSAQHGHMAAIGYD--LYCRMLEDTIKIVKGEIEREP 1018


>gi|168181008|ref|ZP_02615672.1| transcription-repair coupling factor [Clostridium botulinum NCTC
            2916]
 gi|226950995|ref|YP_002806086.1| transcription-repair coupling factor [Clostridium botulinum A2 str.
            Kyoto]
 gi|182668078|gb|EDT80057.1| transcription-repair coupling factor [Clostridium botulinum NCTC
            2916]
 gi|226842319|gb|ACO84985.1| transcription-repair coupling factor [Clostridium botulinum A2 str.
            Kyoto]
          Length = 1168

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 147/465 (31%), Positives = 237/465 (50%), Gaps = 19/465 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT    +     E +A  +  L          G   + +    ++     P+  T  Q 
Sbjct: 573  EWTKTKNKVKKSIEEIAEDLVKLYA--IRATLKGYKYSDDTVWQKQFEEEFPYEETPDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+DI +DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 631  LAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQHY 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+   +  I V++I+     + ++  ++ I  G   I+IGTH + Q  I++  L L+
Sbjct: 691  NNFKQRFWDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  DIS I   P  R P+
Sbjct: 751  IIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T ++  N    + + +   +S G + Y++  ++E        S+ E  + + +      
Sbjct: 811  QTYVVEYND-QLIRDSILREISRGGQIYFVYNRVE--------SIHEMASYISKLVPEGR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M + + E+V+  F      +LIATT+IE G+D+ + + +II +A+  GL+QL+
Sbjct: 862  VQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++ C L Y     L++ +  RL  +K+      GF IA +DL+ R  G 
Sbjct: 922  QLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALKDLEIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            ++G  Q G    +     L+  +LE   K  +  + ++P  TSV 
Sbjct: 982  MMGSAQHGHMASIGYD--LYCRMLEDTIKLVRGDIDKEPVETSVE 1024


>gi|170759697|ref|YP_001788879.1| transcription-repair coupling factor [Clostridium botulinum A3 str.
            Loch Maree]
 gi|169406686|gb|ACA55097.1| transcription-repair coupling factor [Clostridium botulinum A3 str.
            Loch Maree]
          Length = 1168

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 147/465 (31%), Positives = 237/465 (50%), Gaps = 19/465 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT    +     E +A  +  L          G   + +    ++     P+  T  Q 
Sbjct: 573  EWTKTKNKVKKSIEEIAEDLVKLYA--IRATLKGYKYSDDTVWQKQFEEEFPYEETPDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+DI +DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 631  LAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQHY 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+   +  I V++I+     + ++  ++ I  G   I+IGTH + Q  I++  L L+
Sbjct: 691  NNFKQRFSDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  DIS I   P  R P+
Sbjct: 751  IIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T ++  N    + + +   +S G + Y++  ++E        S+ E  + + +      
Sbjct: 811  QTYVVEYND-QLIRDSILREISRGGQIYFVYNRVE--------SIHEMASYISKLVPEGR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M + + E+V+  F      +LIATT+IE G+D+ + + +II +A+  GL+QL+
Sbjct: 862  VQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++ C L Y     L++ +  RL  +K+      GF IA +DL+ R  G 
Sbjct: 922  QLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALKDLEIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            ++G  Q G    +     L+  +LE   K  +  + ++P  TSV 
Sbjct: 982  MMGSAQHGHMASIGYD--LYCRMLEDTIKLVRGDIDKEPVETSVE 1024


>gi|251792001|ref|YP_003006721.1| transcription-repair coupling factor [Aggregatibacter aphrophilus
            NJ8700]
 gi|247533388|gb|ACS96634.1| transcription-repair coupling factor [Aggregatibacter aphrophilus
            NJ8700]
          Length = 1151

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 154/480 (32%), Positives = 253/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W     +       +A ++  +  +++ +   G     + +  Q+     PF 
Sbjct: 545  HKLGSEAWGKARSKAAEKIRDVAAELLDVYAQREAQ--KGFAFRYDREEFQQFTATFPFE 602

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q  AI  ++ DM+    M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 603  ETHDQLMAINAVISDMTLPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 662

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH++  K    N  + VE+++       +++ ++ +A G+  I+IGTH + Q  +Q+
Sbjct: 663  LAQQHFDNFKDRFANLPVNVEMLSRFKTAKEQKQVIQDLADGKVDILIGTHKIIQGDVQF 722

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            + L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 723  HDLGLLIIDEEHRFGVRQKEKMKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 782

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  + E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 783  ARRLTIKTFVRQTDEL-VIREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVP 836

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A++FG
Sbjct: 837  E--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFG 894

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L++ ++   GF++A  DL+ 
Sbjct: 895  LAQLHQLRGRVGRSHHQAYAYLLTPPPKLMTKDAQKRLEALESLDNLGAGFILATHDLEI 954

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LLE A K  K    ++P L  +  Q   I L +
Sbjct: 955  RGAGELLGNEQSGQIESIGFS--LYMELLERAVKALKE--GREPSLDELTQQQTEIDLRM 1010


>gi|18311466|ref|NP_563400.1| transcription-repair coupling factor [Clostridium perfringens str.
            13]
 gi|18146150|dbj|BAB82190.1| transcription-repair coupling factor [Clostridium perfringens str.
            13]
          Length = 1162

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 143/458 (31%), Positives = 229/458 (50%), Gaps = 17/458 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +       +AG +  L    +     G   + + +  ++     P+  T  Q 
Sbjct: 567  EWQKAKAKVRKSINDIAGDLVKLYA--ERSTVKGYKFSKDTQWQKQFEDEFPYEETPDQL 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QHY
Sbjct: 625  SAIEDIKSDMEANKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +KK      I +++I+    +  + + L+ +  G   I+IGTH L    IQ+  L L+
Sbjct: 685  KNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R PI
Sbjct: 745  IVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYPI 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + + +   ++   + Y++  ++E  +E            L     +++
Sbjct: 805  QTYVVEQND-QLIRDAILREINRDGQVYFVHNRVESIQEIANY-----IQELVPECKATV 858

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              IHG+M++   E+ M  F      +L+ T++IE GID+ + + +I+ +A+  GL+QL+Q
Sbjct: 859  --IHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR  +++    LY     L++ +  RL  LK+      GF IA  DL+ R  G +
Sbjct: 917  LRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNM 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            +G  Q G    +     L+  +LE   K  K  + ++P
Sbjct: 977  MGSAQHGHMAAIGYD--LYCRMLEDTIKIVKGEIEREP 1012


>gi|218134568|ref|ZP_03463372.1| hypothetical protein BACPEC_02471 [Bacteroides pectinophilus ATCC
            43243]
 gi|217989953|gb|EEC55964.1| hypothetical protein BACPEC_02471 [Bacteroides pectinophilus ATCC
            43243]
          Length = 1177

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 141/458 (30%), Positives = 231/458 (50%), Gaps = 17/458 (3%)

Query: 214  KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            K    EW     +     E +A  +  L  ++Q ++        +    ++     P+  
Sbjct: 571  KLNSQEWGKTKSKVKTAVEQVAKDLVELYAKRQNEQG--FQFGEDTVWQREFEEMFPYEE 628

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q +AI+D   DM     M R++ GDVG GKT VA+ A   AV+ G Q   + P  IL
Sbjct: 629  TSDQLAAIEDTKHDMQSTKIMDRLICGDVGYGKTEVAIRAAFKAVQDGKQVAYLVPTTIL 688

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            AQQH+   ++  ++  + V +++        ++ +  +  G   I+IGTH L    ++Y 
Sbjct: 689  AQQHFNTFEQRMKDFPVKVAMLSRFRTPKEIKQTIADLRKGMVDIVIGTHRLLSKDVEYK 748

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L L+I+DE+ RFGV  + K+ +      VL ++ATPIPRTL ++ +G  D+S + E P 
Sbjct: 749  DLGLLIIDEEQRFGVSHKEKIKKLKENVDVLTLSATPIPRTLHMSLVGIRDMSVLEEPPV 808

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             R PI+T +   N  + V E +   L+ G + Y++  ++    E+       R   L   
Sbjct: 809  DRMPIQTFVTEQND-EMVREAINRELARGGQVYYVYNRVRNIDEAAS-----RIQQLVPD 862

Query: 514  FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++A  HG+M +   E++M  F NG   +L++TT+IE G+D+ + + +IIE+AE+ GL
Sbjct: 863  --ANVAYAHGQMDEKTLEAIMYDFINGDIDVLVSTTIIETGLDISNVNTMIIEDAENLGL 920

Query: 574  AQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            +QL+QLRGRVGR    +   LLY     L + +  RL  ++       GF IA +DL+ R
Sbjct: 921  SQLYQLRGRVGRSNRTAYAFLLYRRGKMLKEVAEKRLHAIREFTELGSGFKIAMKDLEIR 980

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
              G +LG  Q G    +     L+  +L  A  + K I
Sbjct: 981  GAGNVLGEAQHGHMAAVGYD--LYCKMLNEAVNELKGI 1016


>gi|115351983|ref|YP_773822.1| transcription-repair coupling factor [Burkholderia ambifaria AMMD]
 gi|115281971|gb|ABI87488.1| transcription-repair coupling factor [Burkholderia ambifaria AMMD]
          Length = 1185

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 232/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++     ++    +  K   +  F  T  Q 
Sbjct: 582  QWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYV--KFAESFGFEETPDQA 639

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 640  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 699

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 700  QTFVDRFADWPVRIVELSRFKTTKEVNAAIAQINEGTVDIVIGTHKLLSSDVQFKRLGLV 759

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 760  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 819

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 820  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRRAMLEELVPE--ARI 871

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 872  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 931

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 932  LRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 991

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 992  LGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1040


>gi|153940210|ref|YP_001392893.1| transcription-repair coupling factor [Clostridium botulinum F str.
            Langeland]
 gi|152936106|gb|ABS41604.1| transcription-repair coupling factor [Clostridium botulinum F str.
            Langeland]
 gi|295320870|gb|ADG01248.1| transcription-repair coupling factor [Clostridium botulinum F str.
            230613]
          Length = 1168

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 147/465 (31%), Positives = 236/465 (50%), Gaps = 19/465 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT    +     E +A  +  L          G   + +    ++     P+  T  Q 
Sbjct: 573  EWTKTKNKVKKSIEEIAEDLVKLYA--IRATLKGYKYSDDTVWQKQFEEEFPYEETPDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+DI +DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 631  LAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQHY 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+   +  I V++I+     + ++  ++ I  G   I+IGTH + Q  I++  L L+
Sbjct: 691  NNFKQRFSDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  DIS I   P  R P+
Sbjct: 751  IIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T ++  N    + + +   +S G + Y++  ++E        S+ E  + + +      
Sbjct: 811  QTYVVEYND-QLIRDSILREISRGGQIYFVYNRVE--------SIHEMASYISKLVPEGR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M + + E V+  F      +LIATT+IE G+D+ + + +II +A+  GL+QL+
Sbjct: 862  VQIAHGQMKEKELEHVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++ C L Y     L++ +  RL  +K+      GF IA +DL+ R  G 
Sbjct: 922  QLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALKDLEIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            ++G  Q G    +     L+  +LE   K  +  + ++P  TSV 
Sbjct: 982  MMGSAQHGHMASIGYD--LYCRMLEDTIKLVRGDIDKEPVETSVE 1024


>gi|269926461|ref|YP_003323084.1| transcription-repair coupling factor [Thermobaculum terrenum ATCC
            BAA-798]
 gi|269790121|gb|ACZ42262.1| transcription-repair coupling factor [Thermobaculum terrenum ATCC
            BAA-798]
          Length = 1150

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 148/489 (30%), Positives = 248/489 (50%), Gaps = 22/489 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R      + LA ++  L   ++     G   + + ++ ++     P+  T  Q 
Sbjct: 550  DWARTKRRAKKAADQLAKELLQLYAAREIA--KGHSFSPDNELHKEFESAFPYVETDDQL 607

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+D+  DM     M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA QHY
Sbjct: 608  AAIEDVKADMESPKPMDRLICGDVGYGKTEVALRAAFKAVADGKQVAVLVPTTVLALQHY 667

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  +       I VE+++    +  R + LE +  G   I+IGTH + Q ++ +  L LV
Sbjct: 668  ETFRSRFNPFGIRVEMLSRLRTKKERDQVLEDLQKGNVDIVIGTHTILQKNVVFKDLGLV 727

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L Q  T   VL +TATPIPRTL +   G  D+S I   P  R P+
Sbjct: 728  IVDEEQRFGVKHKETLKQIRTQVDVLTLTATPIPRTLQMALSGVRDMSVIETAPEDRLPV 787

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T I+P N    + + +   L  G + +++  ++++          +  + L E    + 
Sbjct: 788  YTYIVPKND-SIIRDSIIRELERGGQVFYVHNRVQDI--------YKVAHKLQEMVPEAR 838

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I + HG+M +   E VM  F +    +L+ TT+IE G+D+ +A+ +I+++A H GLAQL+
Sbjct: 839  ITVAHGQMPEQQLEQVMLDFMHHHYDVLVCTTIIESGLDIPNANTLIVDDATHMGLAQLY 898

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGE 632
            QLRGRVGR    +   L+Y P   +++++  RL  +        GF +A +DL+ R  G 
Sbjct: 899  QLRGRVGRSSNRAYAYLMYRPDARMTEDAQKRLEAISEATQLGAGFRVAMKDLEIRGAGN 958

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK--HILTQDPDLT-SVRGQSIRILLYLYQ 689
             LG +QSG    +    EL+  ++E A ++ +    +++ P +T  +   ++    Y+  
Sbjct: 959  FLGPEQSGHVYAI--GLELYTQMIERAVQELRTGQPISEPPAVTIDLPIPALIPEHYVSD 1016

Query: 690  YNEAFQFIR 698
             +   +  R
Sbjct: 1017 RDTRIRLYR 1025


>gi|170763931|ref|ZP_02635347.2| transcription-repair coupling factor [Clostridium perfringens B str.
            ATCC 3626]
 gi|170764087|ref|ZP_02631749.2| transcription-repair coupling factor [Clostridium perfringens E str.
            JGS1987]
 gi|170662722|gb|EDT15405.1| transcription-repair coupling factor [Clostridium perfringens E str.
            JGS1987]
 gi|170712080|gb|EDT24262.1| transcription-repair coupling factor [Clostridium perfringens B str.
            ATCC 3626]
          Length = 1168

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 230/459 (50%), Gaps = 19/459 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +       +AG +  L    +     G   + + +  ++     P+  T  Q 
Sbjct: 573  EWQKAKAKVRKSINDIAGDLVKLYA--ERSTVKGYKFSKDTQWQKQFEDEFPYEETPDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QHY
Sbjct: 631  SAIEDIKSDMEANKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQHY 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +KK      I +++I+    +  + + L+ +  G   I+IGTH L    IQ+  L L+
Sbjct: 691  KNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R PI
Sbjct: 751  IVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYPI 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T ++  N    + + +   ++   + Y++  ++E        S+ E  N + E      
Sbjct: 811  QTYVVEQND-QLIRDAILREINRDGQVYFVHNRVE--------SIQEVANYIQELVPECK 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              +IHG+M++   E+ M  F      +L+ T++IE GID+ + + +I+ +A+  GL+QL+
Sbjct: 862  ATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR  +++    LY     L++ +  RL  LK+      GF IA  DL+ R  G 
Sbjct: 922  QLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ++G  Q G    +     L+  +LE   K  K  + ++P
Sbjct: 982  MMGSAQHGHMAAIGYD--LYCRMLEDTIKIVKGEIEREP 1018


>gi|225873359|ref|YP_002754818.1| ATP-dependent DNA helicase RecG [Acidobacterium capsulatum ATCC
           51196]
 gi|225793108|gb|ACO33198.1| ATP-dependent DNA helicase RecG [Acidobacterium capsulatum ATCC
           51196]
          Length = 775

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 159/523 (30%), Positives = 269/523 (51%), Gaps = 27/523 (5%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L   +   +GVG + +  L++             DLL + P  + DR +   + ++ 
Sbjct: 1   MLSLDTEVQFVKGVGPRIAAALAE------KGIRTVDDLLLHLPFRYEDRLHPRALMDLV 54

Query: 66  EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV 125
              + ++   +      + +    +++ +  GT  +  ++F+     LK+ F  G+ + +
Sbjct: 55  PGEMASVIAEVRGTILLRTRNMPIFEMTVGQGTTAMKCIWFHG--TYLKDRFQAGQTVAL 112

Query: 126 TGKIKKLKNR--IIMVHPHYIF------HNSQDVNFPLIEAVYSLPTG--LSVDLFKKII 175
            GK++  ++     M+ P             + +    I  VY    G  LS    ++++
Sbjct: 113 FGKVEPSRSTKNFKMIQPQVEVLREGKDQEDEMLEVGRITPVYESLGGSQLSTRWIRRVL 172

Query: 176 VEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAY 230
              L  +   +PE + + LL +   PS  EA  ++H P           W +PA +RL +
Sbjct: 173 FHLLREIEGNVPETLPRSLLLRLGLPSREEALKLVHFPAAGTAVSTLQGWATPAHKRLIF 232

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
           +EL   ++ L L R++F +  G+P   + K+   +   +PF PT +Q+ A+ +I+ DM Q
Sbjct: 233 EELFYLELGLELKRRKFHERQGLPFRADDKVRAALRAILPFHPTAAQKRALGEIVADMRQ 292

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-- 348
              M R+LQGDVGSGKT+VA+ AM  A+E G QA +MAP  ILA QHY   ++  + +  
Sbjct: 293 PRPMRRLLQGDVGSGKTIVAVQAMVIAMENGYQAALMAPTEILATQHYLAARRLLEKSKR 352

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              + ++TG++ +  +R    +I  G+A ++IGTHAL ++ +++  L L++VDEQHRFGV
Sbjct: 353 PYRIVLLTGSLDEGVKRANRGKIYRGEADLVIGTHALIEEKVEFANLGLIVVDEQHRFGV 412

Query: 409 QQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
            QR +L +K     P VL MTATPIPRTL L+  GD+D+S I E P GR PI T  IP  
Sbjct: 413 LQRFRLMKKPNQAEPDVLAMTATPIPRTLALSLYGDLDLSVIDELPPGRTPIVTRRIPEE 472

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           + DEV + ++  ++EG++AY + P IE  K+            
Sbjct: 473 KADEVWQFVRAQVAEGRQAYVVYPVIEGSKDDQPELDFAAAEE 515



 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 100/154 (64%), Gaps = 2/154 (1%)

Query: 501 RSVVERFNSLH--EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           RS  E ++SL         + ++HGR+S  DK+  M  F+ G   +LI+TTVIEVG+DV 
Sbjct: 577 RSATEMYDSLRTGALAGLRLGLLHGRLSADDKDVTMKRFQQGEIDVLISTTVIEVGVDVP 636

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +AS++++E+AE FGLAQLHQLRGRVGRG   S C+L+    +S     RL+ +++T+DGF
Sbjct: 637 NASVMVVEHAERFGLAQLHQLRGRVGRGAAKSYCLLVESGRVSPQGEQRLAAMEHTQDGF 696

Query: 619 LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            +AE DL+ R  GE  G +Q+G+P F +A     
Sbjct: 697 ELAEMDLQLRGPGEFFGTRQAGLPDFRVANLLRD 730


>gi|168213408|ref|ZP_02639033.1| transcription-repair coupling factor [Clostridium perfringens CPE
            str. F4969]
 gi|170715029|gb|EDT27211.1| transcription-repair coupling factor [Clostridium perfringens CPE
            str. F4969]
          Length = 1168

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 230/459 (50%), Gaps = 19/459 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +       +AG +  L    +     G   + + +  ++     P+  T  Q 
Sbjct: 573  EWQKAKAKVRKSINDIAGDLVKLYA--ERSTVKGYKFSKDTQWQKQFEDEFPYEETPDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QHY
Sbjct: 631  SAIEDIKSDMETNKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQHY 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +KK      I +++I+    +  + + L+ +  G   I+IGTH L    IQ+  L L+
Sbjct: 691  KNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R PI
Sbjct: 751  IVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYPI 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T ++  N    + + +   ++   + Y++  ++E        S+ E  N + E      
Sbjct: 811  QTYVVEQND-QLIRDAILREINRDGQVYFVHNRVE--------SIQEVANYIQELVPECK 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              +IHG+M++   E+ M  F      +L+ T++IE GID+ + + +I+ +A+  GL+QL+
Sbjct: 862  ATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR  +++    LY     L++ +  RL  LK+      GF IA  DL+ R  G 
Sbjct: 922  QLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ++G  Q G    +     L+  +LE   K  K  + ++P
Sbjct: 982  MMGSAQHGHMAAIGYD--LYCRMLEDTIKIVKGEIEREP 1018


>gi|315634772|ref|ZP_07890054.1| transcription-repair coupling factor [Aggregatibacter segnis ATCC
            33393]
 gi|315476324|gb|EFU67074.1| transcription-repair coupling factor [Aggregatibacter segnis ATCC
            33393]
          Length = 1149

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 158/472 (33%), Positives = 253/472 (53%), Gaps = 18/472 (3%)

Query: 222  SPARERLAYDELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
            +  R R    E +    A LL +  Q + + G     + +  Q+     PF  T  Q  A
Sbjct: 551  AWGRARSKAAEKIRDVAAELLDVYAQREAQKGFAFQYDREEFQQFTATFPFEETHDQLMA 610

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            I  ++ DM+    M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++ 
Sbjct: 611  INAVISDMTLPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHFDN 670

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
             K    N  + VE+++       +++ ++ +A G+  I+IGTH + Q  +Q++ L L+I+
Sbjct: 671  FKDRFANLPVNVEMLSRFKTAKEQKQVIQDLADGKVDILIGTHKIIQGDVQFHDLGLLII 730

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  PA R  IKT
Sbjct: 731  DEEHRFGVRQKEKMKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLTIKT 790

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             +   + +  + E +   +  G + Y++   +   +     +  E+  +L     + + +
Sbjct: 791  FVRQTDEL-VIREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVPE--ARVIV 842

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A++FGLAQLHQLR
Sbjct: 843  GHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLR 902

Query: 581  GRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILG 635
            GRVGR    +   LL  PP  ++K++  RL  L++ ++   GF++A  DL+ R  GE+LG
Sbjct: 903  GRVGRSHHQAYAYLLTPPPKLMTKDAKKRLEALESLDNLGAGFILATHDLEIRGAGELLG 962

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
             +QSG  + +     L+  LLE A K  K    ++P L  +  Q   I L +
Sbjct: 963  NEQSGQIESIGFS--LYMELLERAVKALKE--GREPSLDELTQQQTEIDLRM 1010


>gi|330967943|gb|EGH68203.1| transcription-repair coupling factor [Pseudomonas syringae pv.
            actinidiae str. M302091]
          Length = 1150

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 235/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q++
Sbjct: 553  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPRADYATFSAGFPFEETPDQQT 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 611  TIEAVRADMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYN 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI
Sbjct: 671  SFRDRFADWPVTVEVMSRFKSAKEVSAAVANLAEGKIDIVIGTHKLLQDDVKIKNLGLVI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 731  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   + E L   L  G + Y++   ++  +             L     + I 
Sbjct: 791  TFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 843  IGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPPRKQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 963  GDGQSGQI--QAVGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 1011


>gi|164688875|ref|ZP_02212903.1| hypothetical protein CLOBAR_02523 [Clostridium bartlettii DSM 16795]
 gi|164602079|gb|EDQ95544.1| hypothetical protein CLOBAR_02523 [Clostridium bartlettii DSM 16795]
          Length = 1131

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 152/529 (28%), Positives = 249/529 (47%), Gaps = 28/529 (5%)

Query: 142  HYIFHNSQDVNFPLIEAVYSLP-TGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200
             Y+ H  ++        +  +   G+  D   KII +    L     ++  D + K    
Sbjct: 497  DYVVH--ENSGIGRYTGIEQISVNGIKKDYL-KIIYQGGDNL-----YVPIDQMDKVQKY 548

Query: 201  SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260
              ++A  +  N  K    EWT    +     E +   +  L  +++  +  G   + +  
Sbjct: 549  IGSDAEKVKLN--KLGTNEWTKAKAKVKREIEDMTKDLVELYAKRE--QIKGYKFSKDTV 604

Query: 261  IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
              ++     P+  T+ Q  AIK+  +DM     M R++ GDVG GKT VA+ A   A   
Sbjct: 605  WQKEFESMFPYEETEDQLKAIKETKKDMESSKVMDRLICGDVGYGKTEVAIRAAFKACMD 664

Query: 321  GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              Q  I+ P  ILAQQHY   K+   N  I VE+++       +R+ +     G   I+I
Sbjct: 665  QKQVAILVPTTILAQQHYNTFKQRFANYPIRVEVLSRFKTAKQQREIINDARKGLVDILI 724

Query: 381  GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            GTH +  D I    L LV++DE+ RFGV+ +  L +      VL ++ATPIPRTL ++  
Sbjct: 725  GTHRIISDDINLPNLGLVVIDEEQRFGVKHKESLKKIKNTVDVLTLSATPIPRTLHMSLS 784

Query: 441  GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
            G  D+S I E P  R P+ T +    +   + + ++  ++ G + +++  ++E  +E   
Sbjct: 785  GIRDMSVIEEPPQERHPVITYVAEA-KESIIQDEIEREIARGGQVFFVYNRVEHIEEMAS 843

Query: 501  RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
                     L     + +A+ HGRM+    E+++  F N    +L+ TT++E G+D+ +A
Sbjct: 844  -----MVQRLVPE--AKVAVAHGRMTSKTLENIILGFLNKEYDVLVCTTIVETGMDISNA 896

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE--- 615
            + +II +A+  GLAQL+QLRGRVGR        L+Y     LS+ +  RL  ++      
Sbjct: 897  NTMIIYDADKMGLAQLYQLRGRVGRSSRQGYAYLMYEKDKVLSEVAEKRLKAIREFTEFG 956

Query: 616  DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             GF IA  DL+ R  G ILG +Q G    +     L+  +L  A K  K
Sbjct: 957  SGFKIAMRDLEIRGAGNILGSQQHGHMAVIGYD--LYVKMLNEAIKKVK 1003


>gi|293391342|ref|ZP_06635676.1| transcription-repair coupling factor [Aggregatibacter
            actinomycetemcomitans D7S-1]
 gi|290951876|gb|EFE01995.1| transcription-repair coupling factor [Aggregatibacter
            actinomycetemcomitans D7S-1]
          Length = 1152

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 254/480 (52%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W     +       +A ++  +  +++ +   G     + +  Q+     PF 
Sbjct: 549  HKLGSEAWGKARSKAAEKIRDVAAELLDVYAQREAQ--KGFSFQYDREEFQQFTATFPFE 606

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q  AI  ++ DM+Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 607  ETHDQLMAINAVISDMTQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 666

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH++  K    N  + VE+++       +++ ++ +A G+  I+IGTH + Q  +Q+
Sbjct: 667  LAQQHFDNFKDRFANLPVNVEMLSRFKTAKEQKRVIQDLADGKVDILIGTHKIIQGDVQF 726

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            + L L+I+DE+HRFGV+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 727  HDLGLLIIDEEHRFGVRQKEKMKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 786

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   + +  + E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 787  ARRLTIKTFVRQTDDL-VIREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVP 840

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F +    +L+ +T+IE GIDV  A+ IIIE A++FG
Sbjct: 841  E--ARVTVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFG 898

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L++ ++   GF++A  DL+ 
Sbjct: 899  LAQLHQLRGRVGRSHHQAYAYLLTPPPKLMTKDAQKRLEALESLDNLGAGFILATHDLEI 958

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     L+  LLE A K  K    ++P L  +  Q   I L +
Sbjct: 959  RGAGELLGNEQSGQIESIGFS--LYMELLERAVKALKE--GREPSLDELTQQQTEIDLRV 1014


>gi|182420518|ref|ZP_02643226.2| transcription-repair coupling factor [Clostridium perfringens NCTC
            8239]
 gi|182380350|gb|EDT77829.1| transcription-repair coupling factor [Clostridium perfringens NCTC
            8239]
          Length = 1168

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 143/458 (31%), Positives = 229/458 (50%), Gaps = 17/458 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +       +AG +  L    +     G   + + +  ++     P+  T  Q 
Sbjct: 573  EWQKAKAKVRKSINDIAGDLVKLYA--ERSTVKGYKFSKDTQWQKQFEDEFPYEETPDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QHY
Sbjct: 631  SAIEDIKSDMEANKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQHY 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +KK      I +++I+    +  + + L+ +  G   I+IGTH L    IQ+  L L+
Sbjct: 691  KNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R PI
Sbjct: 751  IVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYPI 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + + +   ++   + Y++  ++E  +E            L     +++
Sbjct: 811  QTYVVEQND-QLIRDAILREINRDGQVYFVHNRVESIQEIANY-----IQELVPECKATV 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              IHG+M++   E+ M  F      +L+ T++IE GID+ + + +I+ +A+  GL+QL+Q
Sbjct: 865  --IHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQLYQ 922

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR  +++    LY     L++ +  RL  LK+      GF IA  DL+ R  G +
Sbjct: 923  LRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNM 982

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            +G  Q G    +     L+  +LE   K  K  + ++P
Sbjct: 983  MGSAQHGHMAAIGYD--LYCRMLEDTIKIVKGEIEREP 1018


>gi|170756439|ref|YP_001783179.1| transcription-repair coupling factor [Clostridium botulinum B1 str.
            Okra]
 gi|169121651|gb|ACA45487.1| transcription-repair coupling factor [Clostridium botulinum B1 str.
            Okra]
          Length = 1168

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 147/465 (31%), Positives = 237/465 (50%), Gaps = 19/465 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT    +     E +A  +  L          G   + +    ++     P+  T  Q 
Sbjct: 573  EWTKTKNKVKKSIEEIAEDLVKLYA--IRATLKGYKYSDDTVWQKQFEEEFPYEETPDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+DI +DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 631  LAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQHY 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+   +  I V++I+     + ++  ++ I  G   I+IGTH + Q  I++  L L+
Sbjct: 691  NNFKQRFSDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  DIS I   P  R P+
Sbjct: 751  IIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T ++  N    + + +   +S G + Y++  ++E        S+ E  + + +      
Sbjct: 811  QTYVVEYND-QLIRDSILREISRGGQIYFVYNRVE--------SIHEMASYISKLVPEGR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M + + E+V+  F      +LIATT+IE G+D+ + + +II +A+  GL+QL+
Sbjct: 862  VQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++ C L Y     L++ +  RL  +K+      GF IA +DL+ R  G 
Sbjct: 922  QLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALKDLEIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            ++G  Q G    +     L+  +LE   K  +  + ++P  TSV 
Sbjct: 982  MMGSAQHGHMASIGYD--LYCRMLEDTIKLVRGDIDKEPVETSVE 1024


>gi|148381479|ref|YP_001256020.1| transcription-repair coupling factor [Clostridium botulinum A str.
            ATCC 3502]
 gi|153934098|ref|YP_001385854.1| transcription-repair coupling factor [Clostridium botulinum A str.
            ATCC 19397]
 gi|153937373|ref|YP_001389261.1| transcription-repair coupling factor [Clostridium botulinum A str.
            Hall]
 gi|148290963|emb|CAL85099.1| transcription-repair coupling factor [Clostridium botulinum A str.
            ATCC 3502]
 gi|152930142|gb|ABS35642.1| transcription-repair coupling factor [Clostridium botulinum A str.
            ATCC 19397]
 gi|152933287|gb|ABS38786.1| transcription-repair coupling factor [Clostridium botulinum A str.
            Hall]
          Length = 1168

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 147/465 (31%), Positives = 237/465 (50%), Gaps = 19/465 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT    +     E +A  +  L          G   + +    ++     P+  T  Q 
Sbjct: 573  EWTKTKNKVKKSIEEIAEDLVKLYA--IRATLKGYKYSDDTVWQKQFEEEFPYEETPDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+DI +DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 631  LAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQHY 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+   +  I V++I+     + ++  ++ I  G   I+IGTH + Q  I++  L L+
Sbjct: 691  NNFKQRFSDFPITVDVISRFRTLSEQKATIKSIKEGNVDILIGTHRILQKDIKFKDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  DIS I   P  R P+
Sbjct: 751  IIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T ++  N    + + +   +S G + Y++  ++E        S+ E  + + +      
Sbjct: 811  QTYVVEYND-QLIRDSILREISRGGQIYFVYNRVE--------SIHEMASYISKLVPEGR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M + + E+V+  F      +LIATT+IE G+D+ + + +II +A+  GL+QL+
Sbjct: 862  VQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++ C L Y     L++ +  RL  +K+      GF IA +DL+ R  G 
Sbjct: 922  QLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALKDLEIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            ++G  Q G    +     L+  +LE   K  +  + ++P  TSV 
Sbjct: 982  MMGSAQHGHMASIGYD--LYCRMLEDTIKLVRGDIDKEPVETSVE 1024


>gi|213967358|ref|ZP_03395506.1| transcription-repair coupling factor [Pseudomonas syringae pv. tomato
            T1]
 gi|301381676|ref|ZP_07230094.1| transcription-repair coupling factor [Pseudomonas syringae pv. tomato
            Max13]
 gi|302058434|ref|ZP_07249975.1| transcription-repair coupling factor [Pseudomonas syringae pv. tomato
            K40]
 gi|302131161|ref|ZP_07257151.1| transcription-repair coupling factor [Pseudomonas syringae pv. tomato
            NCPPB 1108]
 gi|213927659|gb|EEB61206.1| transcription-repair coupling factor [Pseudomonas syringae pv. tomato
            T1]
 gi|331019538|gb|EGH99594.1| transcription-repair coupling factor [Pseudomonas syringae pv.
            lachrymans str. M302278PT]
          Length = 1150

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 235/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q++
Sbjct: 553  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFPFEETPDQQT 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 611  TIEAVRADMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYN 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI
Sbjct: 671  SFRDRFADWPVTVEVMSRFKSAKEVSAAVANLAEGKIDIVIGTHKLLQDDVKIKNLGLVI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 731  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   + E L   L  G + Y++   ++  +             L     + I 
Sbjct: 791  TFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 843  IGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPPRKQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 963  GDGQSGQI--QAVGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 1011


>gi|329666673|gb|AEB92621.1| transcription-repair coupling factor [Lactobacillus johnsonii DPC
           6026]
          Length = 1165

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 136/448 (30%), Positives = 233/448 (52%), Gaps = 17/448 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   +   +  E +A  +  L  +++ +   G   + +  + ++     P+  T  Q 
Sbjct: 563 EWTKTKKRVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQKEFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM     M R+L GDVG GKT VAL A   A+  G Q   +AP  ILAQQH+
Sbjct: 621 RSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E ++   ++  +   +++     A  ++ +E +  G+  +++GTH L    +Q+  L L+
Sbjct: 681 ETMQDRFKDFPVNCALLSRFQTPAEVKEIVEGVKSGKIDMVVGTHRLLSKDVQFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IIDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++       V E +   +    + +++  +I++  +   +        L     + I
Sbjct: 801 QTYVME-EMPSIVREAVLREMKRNGQVFFLHNRIDDIDKVVSQ-----LEELIPE--AKI 852

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +I+E+A+H+GL+QL+Q
Sbjct: 853 EYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYGLSQLYQ 912

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGR+GR   ++    LY P   L++    RLS +++      GF IA  DL  R  G +
Sbjct: 913 LRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGAGNM 972

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARK 661
           LG +Q G    +     L+  +L+ A K
Sbjct: 973 LGKQQHGFIDSVGYD--LYAQMLDEAIK 998


>gi|290475839|ref|YP_003468731.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus
            bovienii SS-2004]
 gi|289175164|emb|CBJ81967.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus
            bovienii SS-2004]
          Length = 1146

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++       +A ++  +  ++  K   G     + +  Q   ++ PF  T  QE 
Sbjct: 549  WNKARQKAAEKVRDVAAELLDVYAQRAIK--PGFACTQDPEQYQLFCQSFPFDTTPDQEQ 606

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A+    Q  ++ P  +LAQQHY+
Sbjct: 607  AINAVLDDMCQPVAMDRLVCGDVGFGKTEVAMRAAFMAITNNKQVAVLVPTTLLAQQHYD 666

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       +++ ++  A G+  IIIGTH L Q+ + +  + L+I
Sbjct: 667  NFRDRFANWPVHLEVLSRFRSAKEQQQVIDMAAEGKVDIIIGTHKLLQNDLCWKDIGLLI 726

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        VL +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 727  VDEEHRFGVRHKERIKAIRADVDVLTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 786

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E  +++       R   L     + I 
Sbjct: 787  TFVREYDSL-VVRESILREILRGGQVYYLYNDVENIEKAKN-----RLEELVPE--ARIV 838

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + D E VM  F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 839  VGHGQMRERDLERVMADFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 898

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 899  RGRVGRSHHQAYAYLLTPNPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 958

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  LLE A    K+   ++P L  +      I L +
Sbjct: 959  GEDQSGQM--ASVGFTLYMELLESAIDALKN--GREPSLEDLTSSQTEIELRM 1007


>gi|302390888|ref|YP_003826708.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM
            5501]
 gi|302202965|gb|ADL11643.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM
            5501]
          Length = 1175

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 140/452 (30%), Positives = 230/452 (50%), Gaps = 19/452 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    +      + +A ++  +   ++ K       + +    Q+   + P+  T  Q 
Sbjct: 578  DWARVKQRVKESVQEMAEELLDIYAEREVKDG--YAFSEDTVWQQEFESDFPYEETPDQL 635

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I+++ +DM     M R+L GDVG GKT VA+ A   AV  G Q  ++ P  ILAQQH 
Sbjct: 636  KTIEEVKEDMESPQPMDRLLCGDVGYGKTEVAIRAAFKAVLDGKQVAMLVPTTILAQQHL 695

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                   ++  + V +++       ++K +E +  G   IIIGTH +    I++  L  +
Sbjct: 696  NTFIDRFEDYPVKVGMLSRFKTAKEQKKIIEDLKQGIIDIIIGTHRILSTDIEFNDLGFL 755

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L Q   +  VL +TATPIPRTL ++ +G  D+S I   P  R PI
Sbjct: 756  IVDEEQRFGVKHKERLKQIKKSIDVLTLTATPIPRTLHMSLVGVRDMSLIETPPQNRYPI 815

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS- 517
            +T +   +  D + E ++  +  G + Y++  ++        +++ +    + +    + 
Sbjct: 816  RTYVREYSD-DLIREAIRKEIDRGGQVYFVHNRV--------KNIDKVAAKIKKLLPKAE 866

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +   HG+MS+   E +M  F +G   +L+ TT+IE G+D+ + + I+I NA+  GLAQL+
Sbjct: 867  VVTAHGQMSEAKLEKIMLGFLDGEHDVLVCTTIIETGLDIPNVNTILINNADQLGLAQLY 926

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++   LLY     LS+ +  RL  +K       GF IA  DL+ R  G 
Sbjct: 927  QLRGRVGRTNRVAYAYLLYQQDQVLSEVAEKRLQAIKEFTNLGSGFKIAMRDLEIRGAGN 986

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ILG KQ G  + +     L+  LLE A  + K
Sbjct: 987  ILGPKQHGHIEAIGFS--LYCKLLEQAVNELK 1016


>gi|28869305|ref|NP_791924.1| transcription-repair coupling factor [Pseudomonas syringae pv. tomato
            str. DC3000]
 gi|28852546|gb|AAO55619.1| transcription-repair coupling factor [Pseudomonas syringae pv. tomato
            str. DC3000]
          Length = 1150

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 235/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q++
Sbjct: 553  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFPFEETPDQQT 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY 
Sbjct: 611  TIEAVRADMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYN 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI
Sbjct: 671  SFRDRFADWPVTVEVMSRFKSAKEVSAAVANLAEGKIDIVIGTHKLLQDDVKIKNLGLVI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 731  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   + E L   L  G + Y++   ++  +             L     + I 
Sbjct: 791  TFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 843  IGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPPRKQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 963  GDGQSGQI--QAVGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 1011


>gi|300312329|ref|YP_003776421.1| transcription-repair ATP-dependent coupling factor [Herbaspirillum
            seropedicae SmR1]
 gi|300075114|gb|ADJ64513.1| transcription-repair ATP-dependent coupling factor (helicase
            superfamily II) protein [Herbaspirillum seropedicae SmR1]
          Length = 1145

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 225/473 (47%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++             +    +  F  T  Q 
Sbjct: 551  QWEKAKRKAAQQVRDTAAELLNLYARRALRQG--HAFQYSAHDYEAFADSFGFEETADQA 608

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  +++DM+    M R++ GDVG GKT VAL A   AV  G Q  I+AP  +LA+QH 
Sbjct: 609  AAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHA 668

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                    N  + +  ++         +A++ +  G   I+IGTH L  D +++ +L LV
Sbjct: 669  ATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEVKFSRLGLV 728

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 729  IIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 788

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +    +   + E     L  G + Y++  ++E        +       L     + I
Sbjct: 789  KTFV-RAEQESTIREACLRELKRGGQVYFLHNEVETI-----ANRKAALEQLLPE--ARI 840

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M + D E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 841  GVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQ 900

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL      LSK +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 901  LRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV 960

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG  QSG    +  Q  ++  +L  A +  K    ++PDL +    +  I L+
Sbjct: 961  LGDHQSGEIHEIGFQ--MYSDMLNEAVRALKD--GREPDLAAPLSTTTEINLH 1009


>gi|161524500|ref|YP_001579512.1| transcription-repair coupling factor [Burkholderia multivorans ATCC
            17616]
 gi|221215034|ref|ZP_03588001.1| transcription-repair coupling factor [Burkholderia multivorans CGD1]
 gi|160341929|gb|ABX15015.1| transcription-repair coupling factor [Burkholderia multivorans ATCC
            17616]
 gi|221164970|gb|EED97449.1| transcription-repair coupling factor [Burkholderia multivorans CGD1]
          Length = 1156

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 232/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++     ++    +  K   +  F  T  Q 
Sbjct: 553  QWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYV--KFAESFGFEETPDQA 610

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 611  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 670

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 671  QTFADRFADWPVRIVELSRFKTTKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 730

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 731  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 790

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 791  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEELVPE--ARI 842

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 843  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 902

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 903  LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 962

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 963  LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1011


>gi|167619661|ref|ZP_02388292.1| transcription-repair coupling factor [Burkholderia thailandensis Bt4]
          Length = 1189

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 232/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++     ++    +  K   +  F  T  Q 
Sbjct: 584  QWERAKRRAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYV--KFADSFGFEETPDQA 641

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 642  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 701

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+++I  G   I+IGTH L    +Q+ +L LV
Sbjct: 702  QTFIDRFADWPVKIVELSRFKSTKEVNAAIQQINDGSVDIVIGTHKLLSSDVQFKRLGLV 761

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 762  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 821

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 822  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRRAMLEELVPE--ARI 873

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 874  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 933

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 934  LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 993

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 994  LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1042


>gi|254520523|ref|ZP_05132579.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA]
 gi|226914272|gb|EEH99473.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA]
          Length = 1169

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 139/458 (30%), Positives = 225/458 (49%), Gaps = 17/458 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +       +A  +  L   +      G     + +  ++     PF  T  Q 
Sbjct: 575  EWNKAKAKVKKSINEIAEDLVKLYATRA--TLKGYKFRKDTEWQKQFEDEFPFEETPDQL 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +++++I  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QHY
Sbjct: 633  TSLEEIKHDMETDKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAEQHY 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + + K   +  + +++I+       ++  L+ +  G   I+IGTH L    I +  L L+
Sbjct: 693  KNMTKRFSDFPVKIDMISRFRSAKEQKATLQAVKEGNVDILIGTHRLVSKDIVFKDLGLL 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R PI
Sbjct: 753  IIDEEQRFGVAQKEKIKGLKKNVDVLTLSATPIPRTLHMSLTGARDISVIETPPEERYPI 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V + +   ++   + Y++  ++E  +      + +    L       +
Sbjct: 813  QTYVVEQND-QLVRDAILREVNRSGQVYYVYNRVESIE-----GMAKYIRELVPE--CKV 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IIHG+M++   E  M SF N    +L+ TT+IE GID+ + + +II +++  GL+QL+Q
Sbjct: 865  GIIHGQMTERQLEKEMVSFMNKDYDILVCTTIIETGIDIPNVNTMIIHDSDKMGLSQLYQ 924

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+    +Y     L++ +  RL  LK+      GF IA  DL+ R  G +
Sbjct: 925  LRGRVGRSNRIAYAYFMYTKDKILTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNM 984

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            +G  Q G    +     L+  +LE   K  K  + ++P
Sbjct: 985  MGSAQHGHMAAIGYD--LYCRMLEDTIKIIKGEIEKEP 1020


>gi|107028877|ref|YP_625972.1| transcription-repair coupling factor [Burkholderia cenocepacia AU
            1054]
 gi|116689965|ref|YP_835588.1| transcription-repair coupling factor [Burkholderia cenocepacia
            HI2424]
 gi|105898041|gb|ABF80999.1| transcription-repair coupling factor [Burkholderia cenocepacia AU
            1054]
 gi|116648054|gb|ABK08695.1| transcription-repair coupling factor [Burkholderia cenocepacia
            HI2424]
          Length = 1156

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++      +++ +   K   +  F  T  Q 
Sbjct: 553  QWERAKRKAAQQIRDTAAELLNLYARRAAREG--HAFSLDPRDYVKFAESFGFEETPDQA 610

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 611  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLSPTTLLAEQHT 670

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 671  QTFADRFADWPVRIVELSRFKTAKEVSAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 730

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 731  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 790

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +      +L     + I
Sbjct: 791  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEALVPE--ARI 842

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 843  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 902

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 903  LRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 962

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 963  LGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1011


>gi|323142960|ref|ZP_08077669.1| transcription-repair coupling factor [Succinatimonas hippei YIT
            12066]
 gi|322417277|gb|EFY07902.1| transcription-repair coupling factor [Succinatimonas hippei YIT
            12066]
          Length = 1164

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 152/474 (32%), Positives = 244/474 (51%), Gaps = 21/474 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  L  R++ +   G    ++ +  ++      +  T  Q +
Sbjct: 563  WSKKKQKAAQKVRDVAAELLDLYARRESR--PGHAFTIDERALEQFASGFGYEETPDQLA 620

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI   L DM Q   M R++ GDVG GKT VAL A   A  +G Q  ++ P  ILA+QHY+
Sbjct: 621  AINATLNDMQQGKPMDRLVCGDVGFGKTEVALRAAFVAANSGMQVALLVPTTILAEQHYQ 680

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K+    T I+VE ++       + + L+++A G   I+IGTH L   ++++  L LVI
Sbjct: 681  NFKERFAGTAIVVEELSRFKSIKEQNEILKKVASGGIDIVIGTHKLLSKTVKFKNLGLVI 740

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ KL +      +L +TATPIPRTL +   G  ++S I   P  R  +K
Sbjct: 741  VDEEHRFGVKQKEKLKELRAEVDLLTLTATPIPRTLNMAMEGMRELSIIATPPEHRLAVK 800

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSI 518
            T +   N      E +   L  G + Y++   +            ++  SL +    + I
Sbjct: 801  TFVSE-NSDQLCREAIMRELRRGGQVYYLHNDVATI--------NQKAESLQKLVPEAKI 851

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M++ + + VM  F +    LL+ +T+IE G+DV  A+ III+ A+  GLAQLHQ
Sbjct: 852  GIGHGQMAERELQKVMRDFYHQRFNLLLCSTIIENGLDVSSANTIIIDRADLLGLAQLHQ 911

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            +RGRVGR    +   L   P   ++K++  RL  + + E+   GF++A  DL+ R  GE+
Sbjct: 912  IRGRVGRSHHQAYAYLFTPPKNLITKDAKRRLDAIASMEELGAGFVLATHDLEIRGAGEL 971

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            LG +QSG  +       L+  +LE A K  K    ++P L  +      I L++
Sbjct: 972  LGEEQSGQIE--SVGFSLYMEMLEAAVKALKS--GREPSLAELTLNECDINLHI 1021


>gi|169343325|ref|ZP_02864335.1| transcription-repair coupling factor [Clostridium perfringens C str.
            JGS1495]
 gi|169298623|gb|EDS80704.1| transcription-repair coupling factor [Clostridium perfringens C str.
            JGS1495]
          Length = 1168

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 230/459 (50%), Gaps = 19/459 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +       +AG +  L    +     G   + + +  ++     P+  T  Q 
Sbjct: 573  EWQKAKAKVRKSINDIAGDLVKLYA--ERSTVKGYKFSKDTQWQKQFEDEFPYEETPDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI+DI  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QHY
Sbjct: 631  SAIEDIKSDMETNKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAEQHY 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +KK      I +++I+    +  + + L+ +  G   I+IGTH L    IQ+  L L+
Sbjct: 691  KNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDIQFKDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R PI
Sbjct: 751  IVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPENRYPI 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T ++  N    + + +   ++   + Y++  ++E        S+ E  N + E      
Sbjct: 811  QTYVVEQND-QLIRDAILREINRDGQVYFVHNRVE--------SIQEVANYIQELVPECK 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              +IHG+M++   E+ M  F      +L+ T++IE GID+ + + +I+ +A+  GL+QL+
Sbjct: 862  ATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR  +++    LY     L++ +  RL  LK+      GF IA  DL+ R  G 
Sbjct: 922  QLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ++G  Q G    +     L+  +LE   K  K  + ++P
Sbjct: 982  MMGSAQHGHMAAIGYD--LYCRMLEDTIKIVKGEIEREP 1018


>gi|156973818|ref|YP_001444725.1| transcription-repair coupling factor [Vibrio harveyi ATCC BAA-1116]
 gi|156525412|gb|ABU70498.1| hypothetical protein VIBHAR_01528 [Vibrio harveyi ATCC BAA-1116]
          Length = 1153

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 151/464 (32%), Positives = 235/464 (50%), Gaps = 19/464 (4%)

Query: 229  AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
                 +A ++  +  +++ K   G    ++           PF  T  Q +AI  +L DM
Sbjct: 562  EKVRDVAAELLDVYAKRELK--PGYKFELDRGQYATFKATFPFEETDDQSTAINAVLSDM 619

Query: 289  SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
             Q   M R++ GDVG GKT VA+ A   A +   Q  ++ P  +LAQQH+E  +    N 
Sbjct: 620  CQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVPTTLLAQQHFENFRDRFANL 679

Query: 349  QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
             I VE+++       ++  L+ +A G+  I++GTH L    I++  L L+IVDE+HRFGV
Sbjct: 680  PIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSDIKFKDLGLLIVDEEHRFGV 739

Query: 409  QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            +Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IKT +      
Sbjct: 740  RQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQRED- 798

Query: 469  DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
              V E     +  G + Y++  Q+E  +        E    L     + + + HG+M + 
Sbjct: 799  SVVREAALREIMRGGQVYFLHNQVETIE-----KTAEDLQKLIPE--ARVTVAHGQMRER 851

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            + E +M+ F +    LL+ TT+IE GIDV  A+ II++ A++ GLAQLHQLRGRVGR   
Sbjct: 852  ELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQLRGRVGRSHH 911

Query: 589  ISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK 643
             +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG   
Sbjct: 912  QAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSGQI- 970

Query: 644  FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
                   L+  +LE A +  K    ++P L  +  +   I + +
Sbjct: 971  -QSVGFTLYMEMLEQAVEALKE--GKEPPLDDLLREQTEIEMRI 1011


>gi|253681221|ref|ZP_04862019.1| transcription-repair coupling factor [Clostridium botulinum D str.
            1873]
 gi|253562459|gb|EES91910.1| transcription-repair coupling factor [Clostridium botulinum D str.
            1873]
          Length = 1169

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 175/639 (27%), Positives = 282/639 (44%), Gaps = 67/639 (10%)

Query: 50   SSFIDRHYRPKISE-ISEERIVTITG-YISQHSSFQLQKRRPYKILLNDGTGEITLLFFY 107
              +        I + I    +V   G  I       L+       +++D        FF 
Sbjct: 430  RDYNIESVYKDIVDNIEFGEVVITFGNQIKGFEYPDLK-----LCVISDKD------FFG 478

Query: 108  RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS 167
            +  +  K    +G      GKIK       +    Y+ H +  +       VY    G+ 
Sbjct: 479  KSRKRTKRTNEKG-----IGKIKSF---AELKPGDYVVHTNHGIG------VY---KGIK 521

Query: 168  VDLFKKIIVEALSRLPVLPEWI-----EKDLLQKKSFPSIAEAFNIIHNPRKAKDF--EW 220
                +    + L       + +     + DL+QK          +   +P+  K    EW
Sbjct: 522  QLEVQGHKKDYLELSYTAGDTLYVPVEQLDLVQKY-------IGSEGKSPKVNKLGGSEW 574

Query: 221  TS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
                 + + A +E+    + L  +R   K       N +    ++     P+  T  Q +
Sbjct: 575  IKAKTKVKKAINEIAEELVKLYAIRSTLKGH---KFNKDTIWQKQFEEEFPYDETPDQLT 631

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI++I  DM     M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QHY 
Sbjct: 632  AIQEIKSDMESGKAMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAEQHYT 691

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             + +   +  + +E+I+     A  +  L  +  G   I+IGTH + Q  +++  L L+I
Sbjct: 692  NLIQRFCDFPVNIEMISRFKTSAQVKSILNEVRVGNVDILIGTHRILQKDVEFKDLGLLI 751

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV  + K+        VL +TATPIPRTL ++  G  DIS I   P  R P++
Sbjct: 752  VDEEQRFGVTHKEKIKNLKKNVDVLTLTATPIPRTLHMSLTGIRDISVIETPPEERYPVQ 811

Query: 460  TVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSS 517
            T ++  N  D++IE  +   L    + Y++  ++   K        E    L + F  S 
Sbjct: 812  TYVVEFN--DQLIEDAISRELDRDGQVYFVYNRVGSIK--------EMAAYLAKMFPNSK 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I I HG+M + + E VM  F      +L+ TT+IE G+D+ +A+ +II +A+ FGL+QL+
Sbjct: 862  IGIAHGQMPERELEKVMYDFMRKEYDILVCTTIIETGLDIQNANTMIIYDADRFGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++   L Y     L++ +  RL  +K+      GF IA  DL+ R  G 
Sbjct: 922  QLRGRVGRSNRMAYAYLTYKKDKVLTEVAEKRLKAIKDFTELGSGFKIAMRDLEIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ++G  Q G    +     L+  +LE   K  +  + ++P
Sbjct: 982  LIGAAQHGHMASVGYD--LYCRMLEDTIKLVRGEIDKEP 1018


>gi|187932793|ref|YP_001884406.1| transcription-repair coupling factor [Clostridium botulinum B str.
            Eklund 17B]
 gi|187720946|gb|ACD22167.1| transcription-repair coupling factor [Clostridium botulinum B str.
            Eklund 17B]
          Length = 1167

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 233/458 (50%), Gaps = 17/458 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +       +A  +  L   +      G   + + +  ++     PF  T  Q 
Sbjct: 575  EWQKAKAKVRKSINDIAEDLVKLYATRS--TIKGHKFSKDTQWQRQFEDEFPFEETPDQL 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +++++I +DM     M R+L GDVG GKT VAL A   AV  G Q  ++ P  ILA+QHY
Sbjct: 633  TSLEEIKKDMESDKVMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVALLVPTTILAEQHY 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +KK   +  I +++++       ++  ++R+  G   I++GTH L    IQ+  L L+
Sbjct: 693  KNMKKRFSDFPIKIDMVSRFRTAKEQKVTIQRLKEGNVDILVGTHKLVSKDIQFKDLGLL 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R P+
Sbjct: 753  IVDEEQRFGVSQKEKIKNIKKNVDVLTLSATPIPRTLHMSLTGARDISVIETPPEERYPV 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + + +   +  G + Y++  ++E+  E            L     S +
Sbjct: 813  QTYVVEQND-QLIRDAILREIGRGGQVYFVYNRVEDINEMARY-----VQELVPE--SKV 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++ HG+M++   E  M SF +    +L+ TT+IE GID+ + + II+ N++  GL+QL+Q
Sbjct: 865  SVTHGQMTERQLEKEMISFMDQESNVLVCTTIIETGIDIPNVNTIIVYNSDKMGLSQLYQ 924

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+   LLY     L++ +  RL  LK+      GF IA  DL+ R  G I
Sbjct: 925  LRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNI 984

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            +G  Q G    +     L+  +LE   K  K  ++++P
Sbjct: 985  MGSSQHGHMASVGYD--LYCRMLEDTIKLIKGDISKEP 1020


>gi|134295974|ref|YP_001119709.1| transcription-repair coupling factor [Burkholderia vietnamiensis G4]
 gi|134139131|gb|ABO54874.1| transcription-repair coupling factor [Burkholderia vietnamiensis G4]
          Length = 1151

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 233/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++     ++    +  K   +  F  T  Q 
Sbjct: 553  QWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYV--KFAESFGFEETPDQA 610

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 611  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 670

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 671  QTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 730

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 731  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 790

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +      +L     + I
Sbjct: 791  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEALVPE--ARI 842

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 843  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 902

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 903  LRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 962

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 963  LGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1011


>gi|167836965|ref|ZP_02463848.1| transcription-repair coupling factor [Burkholderia thailandensis
            MSMB43]
          Length = 1189

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 235/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++     ++    +  K   +  F  T  Q 
Sbjct: 584  QWERAKRRAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYV--KFADSFGFEETPDQA 641

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 642  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLSPTTLLAEQHT 701

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+++I  G   I+IGTH L    +Q+ +L LV
Sbjct: 702  QTFIDRFADWPVKIVELSRFKSTKEVNTAIQQINEGSVDIVIGTHKLLSSDVQFKRLGLV 761

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 762  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 821

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +   +    + E +   L  G + Y++  ++E  +     +      +L     + I
Sbjct: 822  KTFVRSEDE-SVIREAMLRELKRGGQVYFLHNEVETIE-----NRRAMLEALVPE--ARI 873

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            AI HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 874  AIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 933

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 934  LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 993

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 994  LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1042


>gi|325678530|ref|ZP_08158141.1| transcription-repair coupling factor [Ruminococcus albus 8]
 gi|324109749|gb|EGC03954.1| transcription-repair coupling factor [Ruminococcus albus 8]
          Length = 1153

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 138/450 (30%), Positives = 215/450 (47%), Gaps = 19/450 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT    +  A  + +A ++  L    Q +   G     +    ++      +  T  Q 
Sbjct: 561 EWTRTRNKVRAAVKDMAEELTKLYA--QRQMAKGYAFEPDDDWMREFEERFDYQETDDQL 618

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI +I  DM ++  M R+L GDVG GKT VAL A    VE G Q  I+AP  +LA QHY
Sbjct: 619 RAINEIKGDMEKQTPMDRLLCGDVGFGKTEVALRAAFKCVENGKQCAILAPTTVLAWQHY 678

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +   K  ++  I V++++       +   +  +  G   +IIGTH L    +++  L L 
Sbjct: 679 QTAIKRFEHFPIKVQLLSRFRKPKEQSAIVRELKRGTVDLIIGTHRLVSKDVEFKDLGLA 738

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + K  +      +L ++ATPIPRTL +   G  D+S I E P  R PI
Sbjct: 739 IIDEEQRFGVAHKEKFKESHPGVDILTLSATPIPRTLNMALSGIRDMSVIEEPPMDRHPI 798

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +I  N    +++ +   L  G + Y+I  +I+          +   N L      + 
Sbjct: 799 QTYVIEHNE-GVILQAISKELRRGGQVYYIHNRIDTI--------LRTVNRLQSSLPDAR 849

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I   HG+M + +   +          +L+ TT+IE GIDV + + +IIE+A+  GL+QLH
Sbjct: 850 IGYAHGQMEEKELSEIWRQVVEHEIDILVCTTLIETGIDVPNVNTLIIEDADRLGLSQLH 909

Query: 578 QLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGRVGR    +     +     L++ +  RL  ++       GF IA  DL+ R  G 
Sbjct: 910 QLRGRVGRSNRRAFAYFTFRRGKVLNETASKRLQAIREFTQFGSGFHIAMRDLEIRGAGS 969

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           IL  KQ G  + +     ++  LL  A  +
Sbjct: 970 ILSAKQHGHMEAVGYD--MYLRLLNEAIAE 997


>gi|158321662|ref|YP_001514169.1| transcription-repair coupling factor [Alkaliphilus oremlandii OhILAs]
 gi|158141861|gb|ABW20173.1| transcription-repair coupling factor [Alkaliphilus oremlandii OhILAs]
          Length = 1174

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 171/585 (29%), Positives = 273/585 (46%), Gaps = 50/585 (8%)

Query: 108  RKTEMLKNVFFEGRKITVTG--KIKKLKNRIIMVHP----------HYIFHNSQDVNFPL 155
            R  E +KN F       + G  K ++  N+     P           Y+ H         
Sbjct: 460  RGFEYVKNKFAVITDYEIYGVHKQQRKTNKTKDASPIKSFIDLKVGDYVVHEGH--GIGK 517

Query: 156  IEAVYSLP-TGLSVDLFK-KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
               +  L   G+  D  K +   E    +P        DL+QK               P 
Sbjct: 518  YIGIEELKVEGVKKDYLKIRYSGEGFLYVPTDQ----MDLIQKY--------IGSDDAPP 565

Query: 214  KAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            K       EW     +     E +AG++  L    + +K  G   + +    ++     P
Sbjct: 566  KLNKLGGSEWAKTKTKVKKAIEDMAGELIKLYA--EREKTKGHAFSPDSDWQKQFEELFP 623

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            +  T  Q   I+++ QDM ++  M R+L GDVG GKT VA+ A   AV    Q   + P 
Sbjct: 624  YEETPDQLRCIEEVKQDMEKERAMDRLLCGDVGYGKTEVAIRAAFKAVGDSKQVAFLVPT 683

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             ILAQQHY   K+   +  I VE+++       ++K +E I  G   I+IGTH L    I
Sbjct: 684  TILAQQHYNTFKQRFSDFPITVEMLSRFKNATAQKKIIENIRTGNVDIVIGTHRLLSKDI 743

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +Y  L L+IVDE+ RFGV+ +  L +   +  VL +TATPIPRTL ++ +G  D+S I +
Sbjct: 744  EYKDLGLLIVDEEQRFGVKHKEALKKLKKSIDVLTLTATPIPRTLHMSMIGIRDMSVIED 803

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R P++T ++  +    V++ +   L+ G + Y++  +++         + +  N+L
Sbjct: 804  PPEERFPVQTYVLGYSE-SMVVDAISRELARGGQVYYVYNRVQ--------GIHQVANNL 854

Query: 511  HEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
             E      +A+ HG+MS+ + E +M  + NG   +L++TT+IE G+D+ + + III++A+
Sbjct: 855  KELVPQGRVAVAHGQMSERELEKIMLEYMNGEYDILVSTTIIETGMDISNVNTIIIQDAD 914

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEED 624
              GL+QL+QLRGRVGR        L+Y     LS+ +  RL  +K       GF IA  D
Sbjct: 915  KLGLSQLYQLRGRVGRSYRQGYAYLMYEKDKILSEVAEKRLKAIKEFTEFGSGFKIAMRD 974

Query: 625  LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            L+ R  G +LG +Q G    +     L+  LLE    + +   T+
Sbjct: 975  LEIRGAGNLLGGEQHGHMAAIGYD--LYVKLLEETVGEMRGEYTE 1017


>gi|221198238|ref|ZP_03571284.1| transcription-repair coupling factor [Burkholderia multivorans CGD2M]
 gi|221209180|ref|ZP_03582172.1| transcription-repair coupling factor [Burkholderia multivorans CGD2]
 gi|221170918|gb|EEE03373.1| transcription-repair coupling factor [Burkholderia multivorans CGD2]
 gi|221182170|gb|EEE14571.1| transcription-repair coupling factor [Burkholderia multivorans CGD2M]
          Length = 1156

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 232/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++     ++    +  K   +  F  T  Q 
Sbjct: 553  QWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYV--KFAESFGFEETPDQA 610

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 611  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 670

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 671  QTFADRFADWPVRIVELSRFKTTKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 730

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 731  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 790

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 791  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEELVPE--ARI 842

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 843  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 902

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 903  LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 962

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 963  LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1011


>gi|184157970|ref|YP_001846309.1| transcription-repair coupling factor [Acinetobacter baumannii ACICU]
 gi|332874430|ref|ZP_08442333.1| transcription-repair coupling factor [Acinetobacter baumannii
            6014059]
 gi|183209564|gb|ACC56962.1| Transcription-repair coupling factor (superfamily II helicase)
            [Acinetobacter baumannii ACICU]
 gi|322508289|gb|ADX03743.1| Transcription-repair coupling protein [Acinetobacter baumannii
            1656-2]
 gi|332737274|gb|EGJ68198.1| transcription-repair coupling factor [Acinetobacter baumannii
            6014059]
          Length = 1153

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555  WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613  AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673  SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   L  G + Y++  ++E  +        E    L     + +A
Sbjct: 793  TFV-QEHTDASIKEAILRELLRGGQVYFLHNEVETIE-----RAAENIRVLVPE--ARVA 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 965  GEQQSGSMQAIGYS--LYMEMLEKATKAIQQ--GKTPNFDAPLSLTAEINLHI 1013


>gi|332851753|ref|ZP_08433678.1| transcription-repair coupling factor [Acinetobacter baumannii
            6013150]
 gi|332729760|gb|EGJ61095.1| transcription-repair coupling factor [Acinetobacter baumannii
            6013150]
          Length = 1153

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555  WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613  AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673  SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   L  G + Y++  ++E  +        E    L     + +A
Sbjct: 793  TFV-QEHTDASIKEAILRELLRGGQVYFLHNEVETIE-----RAAENIRVLVPE--ARVA 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 965  GEQQSGSMQAIGYS--LYMEMLEKATKAIQQ--GKTPNFDAPLSLTAEINLHI 1013


>gi|23097518|ref|NP_690984.1| transcription-repair coupling factor [Oceanobacillus iheyensis
            HTE831]
 gi|22775741|dbj|BAC12019.1| transcription-repair coupling factor (TRCF) [Oceanobacillus iheyensis
            HTE831]
          Length = 1173

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 147/467 (31%), Positives = 247/467 (52%), Gaps = 23/467 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  +  L   ++ K+      + + ++  +   + P+  T  Q 
Sbjct: 572  EWTKVKRKVQSSVEDIADDLIKLYAEREAKQG--YAFSPDSELQHEFEASFPYQETDDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I++I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  I+ P  ILAQQHY
Sbjct: 630  RCIQEIKEDMEKERPMDRLLCGDVGYGKTEVAIRAAFKAISDGKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + +  + +  G   +++GTH +    ++Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTKKQQTETTKGLKSGNVDVVVGTHRILSKDVEYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + K+ Q  T   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 750  IVDEEQRFGVKHKEKIKQLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPI 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T +   N I  + E ++  +  G + +++  ++E   +            L     + I
Sbjct: 810  QTYVTEYNPI-FMREAIEREMGRGGQVFFLYNRVESIDKIARD-----LGMLVPE--AKI 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ + E+V+ SF  G   +L++TT+IE G+D+ + + +I+ +A++ GL+QL+Q
Sbjct: 862  AVAHGQMNESELENVIFSFLEGEFDILVSTTIIETGVDIPNVNTLIVNHADYMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFTYQKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGTGNL 981

Query: 634  LGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQ---DPDLT 674
            LG +Q G      F +    L D++   ARK  K I      +P+L+
Sbjct: 982  LGSQQHGFIDSVGFDMYSQMLKDAI--DARKAGKEIEEITPFEPELS 1026


>gi|83745897|ref|ZP_00942954.1| Transcription-repair coupling factor [Ralstonia solanacearum UW551]
 gi|83727587|gb|EAP74708.1| Transcription-repair coupling factor [Ralstonia solanacearum UW551]
          Length = 1206

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 156/472 (33%), Positives = 231/472 (48%), Gaps = 19/472 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++    P+       +    +  F  T  Q 
Sbjct: 613  QWEKAKRRAAQQIRDTAAELLNLYARRALRQGFAFPLTPND--YEAFAESFGFDETPDQA 670

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QHY
Sbjct: 671  AAITAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHY 730

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +     +  + +  I+    +     A+E I  G   I+IGTH L    +Q+ +L LV
Sbjct: 731  QTLADRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVQFDRLGLV 790

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 791  IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 850

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +   +   L     + +
Sbjct: 851  KTFV-RREEDSVLREAILRELKRGGQVYFLHNEVETIE-----NKRAKLEELVPE--ARV 902

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQ
Sbjct: 903  AVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQ 962

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H    L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 963  LRGRVGRSHHQAYAYLLVHDAEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV 1022

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG KQSG    +  Q  L+  +L  A K  K    ++PDL +    +  I L
Sbjct: 1023 LGDKQSGEISEIGFQ--LYTDMLNHAVKSLKA--GKEPDLMAPLAATTEINL 1070


>gi|134297990|ref|YP_001111486.1| transcription-repair coupling factor [Desulfotomaculum reducens MI-1]
 gi|134050690|gb|ABO48661.1| transcription-repair coupling factor [Desulfotomaculum reducens MI-1]
          Length = 1169

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 141/453 (31%), Positives = 238/453 (52%), Gaps = 21/453 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW+    +     + +A ++  L   +Q     G   + +     +     P+  T  Q 
Sbjct: 575  EWSKAKAKVREAVKDMADELLALYASRQ--TVRGHAFSKDMPWQAEFEALFPYEETPDQL 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI ++ QDM +   M R+L GDVG GKT VAL A   AV    Q  ++ P  ILAQQHY
Sbjct: 633  RAIGEVKQDMEKVRPMDRLLCGDVGYGKTEVALRAAFKAVMDNKQVAVLVPTTILAQQHY 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++   N  I +E+++       +R+ L  +A G+  I++GTH L Q+ I +  L L+
Sbjct: 693  NTFRERFANYPIRIEMLSRFRTAKEQRQVLAGLATGEVDIVVGTHRLVQNDIVFKDLGLL 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV  + +L Q      VL ++ATPIPRTL ++ +G  D S +   P  R P+
Sbjct: 753  VVDEEQRFGVSHKERLKQIRKNVDVLTLSATPIPRTLHMSLVGVRDTSLLETPPEERFPV 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TS 516
            +T ++  + +  + E +K  L+ G + Y++  ++ +          +R     ++    +
Sbjct: 813  QTYVLEEDPV-LIREAIKRELNRGGQVYFVHNRVMDL---------DRLAGWLQNLVPEA 862

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             I + HG+M + + E +M  F +G   +L+ TT++E G+D+ + + +I+++A+HFGL+QL
Sbjct: 863  RIGMAHGQMKEDELEQIMIEFMDGEYDVLVCTTIVETGLDISNVNTLIVKDADHFGLSQL 922

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
            +QLRGRVGR   ++    L+     L++ S  RLS ++       G+ IA  DL+ R  G
Sbjct: 923  YQLRGRVGRTNRLAYAYFLFRRDKVLTEISERRLSAIREFTEFGSGYKIAMRDLEIRGAG 982

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             ILG +Q G         +L+  LLE A ++A+
Sbjct: 983  NILGAQQHGHI--AEVGFDLYCRLLEEAVQEAR 1013


>gi|239502151|ref|ZP_04661461.1| transcription-repair coupling factor [Acinetobacter baumannii AB900]
          Length = 1153

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555  WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613  AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673  SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   L  G + Y++  ++E  +        E    L     + +A
Sbjct: 793  TFV-QEHTDASIKEAILRELLRGGQVYFLHNEVETIE-----RAAENIRVLVPE--ARVA 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 965  GEQQSGSMQAIGYS--LYMEMLEKATKAIQQ--GKTPNFDAPLSLTAEINLHI 1013


>gi|167816296|ref|ZP_02447976.1| transcription-repair coupling factor [Burkholderia pseudomallei 91]
          Length = 1175

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 231/473 (48%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++       ++ +   K   +  F  T  Q 
Sbjct: 570  QWERAKRRAAQQIRDTAAELLNLYARRAAREG--HAFGLDPRDYVKFADSFGFEETPDQA 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 628  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 688  QTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 748  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 808  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEELVPE--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 860  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 920  LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 980  LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1028


>gi|260887854|ref|ZP_05899117.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
           35185]
 gi|330838722|ref|YP_004413302.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
           35185]
 gi|260862360|gb|EEX76860.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
           35185]
 gi|329746486|gb|AEB99842.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
           35185]
          Length = 1118

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 233/450 (51%), Gaps = 18/450 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW        A  E +A ++  L  +++     G   + +    ++     P+  T  Q 
Sbjct: 499 EWVKAKARARASVEDIADELIALYAKRRAA--KGFAFSPDTPWQREFEDAFPYEETPDQR 556

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I  DM +   M R+L GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH+
Sbjct: 557 RAIEEIKADMEKPEPMDRLLCGDVGFGKTEVAIRAAYKAVMDHKQVAVLVPTTVLAQQHF 616

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF-QDSIQYYKLIL 397
           +       +  + V++I        ++  +ER+   +  ++IGTHA+  Q  + +  L L
Sbjct: 617 QTFSARFADFGVSVDVICRFRSAKEQKATIERLEANKVDVLIGTHAILNQKRVHFSDLGL 676

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV+Q+ K+ + A    VL ++ATPIPRTL ++ +G  D+S I   PA R P
Sbjct: 677 LIVDEEQRFGVKQKEKIKKLAAGVDVLTLSATPIPRTLHMSLVGARDMSIIETPPAERFP 736

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +++ +I  N    +   ++  L  G + Y++  ++E         +  R   L     + 
Sbjct: 737 VQSYVIEDNG-AVLKNAIRRELRRGGQVYFVYNRVESID-----IMRRRLEELVPE--AR 788

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I   HG+M++   E VM  F  G   +L+AT+++E G+DV +A+ II+ NA+ FGL+QL+
Sbjct: 789 IQTGHGQMAEELLERVMVDFYEGRYDILLATSIVENGLDVANANTIIVYNADRFGLSQLY 848

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           Q+RGRVGR   ++    +Y     LS+ +  RL  +K   +   GF IA  DL+ R  G 
Sbjct: 849 QMRGRVGRSNHMAFAYFVYQADKVLSEMAEKRLQAMKEFAELGAGFKIAMRDLEIRGAGN 908

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +LG +Q G         E++  LL+ A ++
Sbjct: 909 LLGAEQHGHI--ASVGFEMYSKLLDEAIEE 936


>gi|93006488|ref|YP_580925.1| transcription-repair coupling factor [Psychrobacter cryohalolentis
            K5]
 gi|92394166|gb|ABE75441.1| transcription-repair coupling factor [Psychrobacter cryohalolentis
            K5]
          Length = 1243

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 155/472 (32%), Positives = 241/472 (51%), Gaps = 19/472 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++ L     +A ++  +  R++ K  +GI   ++    +       F  T  Q S
Sbjct: 640  WDKAKQKALEQIHDVAAELLNIQARREAK--VGIHFKIDISQYELFASQFAFEETPDQAS 697

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +++DM Q   M R++ GDVG GKT VA+ A   AV AG Q  ++ P  +LA QH +
Sbjct: 698  AIHAVMEDMKQNQPMDRLICGDVGFGKTEVAMRAAFIAVSAGYQVAVLVPTTLLAGQHED 757

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + +E ++    + H+   L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 758  NFRNRFADWPVRIETLSRFGGKKHQDTVLTDLAAGKVDIVIGTHKLLQPDVKFSNLGLMI 817

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++    T    + MTATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 818  VDEEHRFGVRHKERIKAIQTDVDSMSMTATPIPRTLNMALSGMRDMSIIATPPARRLAIK 877

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++       + E +   L  G + Y +   +   +      + E    L     + + 
Sbjct: 878  TFVMQ-KTDALMKEAILRELLRGGQVYLLHNDVASIE-----RMAETIRELVPE--ARVG 929

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M +   E VM  + +    +LI +T+IE GIDV +A+ IIIE A+ FGLAQLHQL
Sbjct: 930  VAHGQMQERQLEQVMQQYYHKKFNVLICSTIIETGIDVPNANTIIIERADKFGLAQLHQL 989

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR    + C LL      L  ++  RL  ++       GF++A EDL+ R  GEIL
Sbjct: 990  RGRVGRSHHQAYCYLLVPSIKGLKGDAKRRLHAIERANTLGAGFMLASEDLEIRGAGEIL 1049

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            G +QSG  + +     +   +LE A K  K    ++PDL++    +  I L+
Sbjct: 1050 GKQQSGNMQAIGFSLYMD--MLERATKAIKA--GKEPDLSTPLSLTSEINLH 1097


>gi|288575748|ref|ZP_06393934.1| transcription-repair coupling factor [Neisseria mucosa ATCC 25996]
 gi|288567230|gb|EFC88790.1| transcription-repair coupling factor [Neisseria mucosa ATCC 25996]
          Length = 724

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 236/449 (52%), Gaps = 15/449 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 147 LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 206

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 207 DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 266

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 267 SKATKSALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 326

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 327 VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 385

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 386 RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 438

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 439 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 498

Query: 601 SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 499 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 556

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLY 686
            A +D K    + PDL +  G +  I L+
Sbjct: 557 QAVRDLKK--GRQPDLDAPLGITTEIKLH 583


>gi|323517915|gb|ADX92296.1| transcription-repair coupling factor [Acinetobacter baumannii
            TCDC-AB0715]
          Length = 1153

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555  WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613  AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673  SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   L  G + Y++  ++E  +        E    L     + +A
Sbjct: 793  TFV-QEHTDASIKEAILRELLRGGQVYFLHNEVETIE-----RAAENIRVLVPE--ARVA 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 965  GEQQSGSMQAIGYS--LYMEMLEKATKAIQQ--GKTPNFDAPLSLTAEINLHI 1013


>gi|153811642|ref|ZP_01964310.1| hypothetical protein RUMOBE_02034 [Ruminococcus obeum ATCC 29174]
 gi|149832383|gb|EDM87468.1| hypothetical protein RUMOBE_02034 [Ruminococcus obeum ATCC 29174]
          Length = 1108

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 154/555 (27%), Positives = 266/555 (47%), Gaps = 47/555 (8%)

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
           K++++   +    Y+ H    +       +Y     ++VD   K             ++I
Sbjct: 433 KRIQDFSELSIGDYVVHEKHGLG------IYKGIEKVAVDKVAK-------------DYI 473

Query: 190 EKDLLQKKSFPSIAEAFNIIHN--------PRKAKDF---EWTSPARERLAYDELLAGQI 238
           + +     +   +A   + +          P K       EW           + +A ++
Sbjct: 474 KIEYRNGSNLYILATQLDALQKYSGAETAKPPKLNRLGGQEWKKTKSRVRGAVQNIAREL 533

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
             L   +Q K+        +    ++     P+  T+ Q +AI+D  +DM     M R++
Sbjct: 534 VELYAVRQEKEG--YVCGPDTVWQREFEEMFPYEETEDQLAAIEDTKKDMESTKIMDRLV 591

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GDVG GKT VAL A   AV+   Q V + P  ILAQQ Y    +  +   + V+++   
Sbjct: 592 CGDVGYGKTEVALRAAFKAVQESRQVVYLVPTTILAQQVYNTFIQRMKEFPVRVDLLCRF 651

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              A ++K +  +  GQ  I++GTH +    ++Y  L L+I+DE+ RFGV  + K+ Q  
Sbjct: 652 RTAAQQKKTIADLKKGQVDIVVGTHRVLSKDVEYKNLGLLIIDEEQRFGVVHKEKIKQLK 711

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               VL +TATPIPRTL ++ +G  D+S + E P  R PI+T ++  +  + V E +   
Sbjct: 712 KDIDVLTLTATPIPRTLHMSMIGIRDMSVLEEPPMDRVPIQTYVMEYDE-ETVREAINRE 770

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L  G + Y++  ++ +  +        R   L     + +   HG+MS+ + E+VM +F 
Sbjct: 771 LRRGGQVYYVYNRVNDIADVTT-----RIAKLLPD--ARVDFAHGQMSERELEAVMYAFI 823

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-- 596
           NG   +L++TT+IE G+D+ + + +II +++ +GL+QL+QLRGR+GR    +   L+Y  
Sbjct: 824 NGDIDVLVSTTIIETGLDISNVNTMIIHDSDRYGLSQLYQLRGRIGRSNRTAYAFLMYRR 883

Query: 597 HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           +  L + +  RLS ++   D   GF IA  DL+ R  G +LG +Q G    +     L+ 
Sbjct: 884 NTMLKETAEKRLSAIREYTDLGSGFKIAMRDLELRGAGNLLGAEQHGHMNAVGYD--LYC 941

Query: 654 SLLEIARKDAKHILT 668
            +L  A K+AK I T
Sbjct: 942 KMLSEAVKEAKGIHT 956


>gi|148657760|ref|YP_001277965.1| transcription-repair coupling factor [Roseiflexus sp. RS-1]
 gi|148569870|gb|ABQ92015.1| transcription-repair coupling factor [Roseiflexus sp. RS-1]
          Length = 1265

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 151/454 (33%), Positives = 241/454 (53%), Gaps = 17/454 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+  A  + LA ++  L  ++Q  +      + + +  +++  + P+  T  Q 
Sbjct: 616  DWERAKRKARAAVQDLAEELITLYAQRQLAEG--HAFSPDTEWQRELEASFPYVETPDQL 673

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI D+ +DM Q   M R++ GDVG GKT VAL A   AV+ G Q  ++AP  +L QQHY
Sbjct: 674  KAIIDVKRDMEQPQPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAVLAPTTVLVQQHY 733

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + +++I+       + + ++R+A G+  IIIGTH L    + +  L L+
Sbjct: 734  DTFSRRMAAFPVRIDMISRFRSAKEQSEIVQRLARGEIDIIIGTHRLLSKDVVFKDLGLL 793

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + ++ Q  T   VL +TATPIPRTL +   G  D+S I   P  R PI
Sbjct: 794  VIDEEQRFGVRHKERIKQLRTNVDVLTLTATPIPRTLHMALAGIRDLSIIDTPPEDRIPI 853

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT ++P +    + E +   L  G + Y++  +++         V +R   L     + I
Sbjct: 854  KTYVLPYDER-LIREAILRELDRGGQVYFVHNRVQSIY-----YVADRLRRLVPE--ARI 905

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG++ +   E VM  F  G   +L+ TT+IE G+DV +A+ III++A +FGLAQL+Q
Sbjct: 906  AVGHGQLEEHQLERVMLDFFTGRDDVLVCTTIIESGLDVPNANTIIIDDATNFGLAQLYQ 965

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  + +   L Y    P +  +  RL  ++   +   GF IA  DL+ R  G +
Sbjct: 966  LRGRVGRSTQRAYAYLFYKSERPSTPEAQERLRAIQEATELGAGFRIAMRDLEIRGAGNL 1025

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            LG +QSG         +L+  LLE A +  K  L
Sbjct: 1026 LGAEQSGHI--AAVGFDLYSRLLEQAVRTLKQRL 1057


>gi|104773517|ref|YP_618497.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103422598|emb|CAI97201.1| Transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 1158

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 157/539 (29%), Positives = 258/539 (47%), Gaps = 28/539 (5%)

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL-PTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++L++   +    Y+ H +        E + +L   G   D    I  +   +L V  + 
Sbjct: 477 QRLRSYTELKPGDYVVHVNH--GIGRFEGIQTLETDGKKRDYI-TITYQKGDQLFVPDDQ 533

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +   L+QK        +     +  K    EW    +   A  E +A  +  L  +++ +
Sbjct: 534 L--SLVQKY-----VASEGKQPHINKLGGSEWAKTKKRVAARVEDIADDLIELYAKREAE 586

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
              G   + +G          P+ PT  Q  A  +I  DM +   M R+L GDVG GKT 
Sbjct: 587 --KGFAFSPDGSDQAAFEAAFPYEPTPDQLRATAEIKADMEKAKPMDRLLVGDVGFGKTE 644

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VA+ A   A+  G Q   + P  ILAQQHY+ IK   +   + +   +    QA  +K +
Sbjct: 645 VAMRAAFKAICDGKQVAFLVPTTILAQQHYQTIKDRFKGFPVEIASFSRFQGQAESKKIV 704

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             +  G   +++GTH +    +Q   L L+I+DE+ RFGV  + KL Q  T   VL +TA
Sbjct: 705 AGLKDGSIDLVVGTHRILSKDVQLKDLGLLIIDEEQRFGVAHKEKLKQLKTNIDVLTLTA 764

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL ++ +G  D+S +   P  R PI+T ++       V E  +  +  G + +++
Sbjct: 765 TPIPRTLHMSMIGIRDLSVMETPPQNRYPIQTYVLE-QLPGTVKEACQREMQRGGQVFYL 823

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             ++ + +E      V R   L     + IA  HG+MS+   E ++  F +    +L+ T
Sbjct: 824 HNRVGDIEE-----TVARLEQLLPE--ARIAYAHGQMSENQLEDILSRFLDREFDILVTT 876

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYT 606
           T+IE GID+ + + +IIE+A+H+GL+QL+QLRGR+GR   ++    LY P   L++    
Sbjct: 877 TIIETGIDMPNVNTMIIEDADHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEK 936

Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           RL  +++  +   GF IA  DL  R  G +LG +Q G    +     L+  +L  A K+
Sbjct: 937 RLDAIRDFTELGAGFKIAMRDLSIRGAGNMLGAQQHGFIDSVGYD--LYSQMLADAIKE 993


>gi|262278954|ref|ZP_06056739.1| transcription-repair coupling factor [Acinetobacter calcoaceticus
            RUH2202]
 gi|262259305|gb|EEY78038.1| transcription-repair coupling factor [Acinetobacter calcoaceticus
            RUH2202]
          Length = 1153

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 149/473 (31%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555  WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFGFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613  AIEATLHDMQQARPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  + +E+++         K +E +  G+  I++GTH L Q+++Q+  L L++
Sbjct: 673  SFKDRFADWPVRIEVLSRFGSNKAHTKNIEDLIAGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +        + E +   L  G + Y++  +++  +        E    L     + +A
Sbjct: 793  TFVQEHTE-ASIKEAILRELLRGGQVYFLHNEVDTIE-----RAAENIRVLVPE--ARVA 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEQVMQQFYHKEFNVLVCSTIIETGIDVPNANTILIERADKLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 965  GEQQSGSMQAIGYS--LYMEMLEKATKAIQQ--GKTPNFDAPLSLTAEINLHI 1013


>gi|260555151|ref|ZP_05827372.1| transcription-repair coupling factor [Acinetobacter baumannii ATCC
            19606]
 gi|260411693|gb|EEX04990.1| transcription-repair coupling factor [Acinetobacter baumannii ATCC
            19606]
          Length = 1153

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555  WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613  AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673  SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   L  G + Y++  ++E  +        E    L     + +A
Sbjct: 793  TFV-QEHTDASIKEAILRELLRGGQVYFLHNEVETIE-----RAAENIRVLVPE--ARVA 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 965  GEQQSGSMQAIGYS--LYMEMLEKATKAIQQ--GKTPNFDAPLSLTAEINLHI 1013


>gi|30248039|ref|NP_840109.1| mfd: transcription-repair coupling factor [Nitrosomonas europaea ATCC
            19718]
 gi|30179924|emb|CAD83919.1| mfd: transcription-repair coupling factor [Nitrosomonas europaea ATCC
            19718]
          Length = 1154

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 157/485 (32%), Positives = 233/485 (48%), Gaps = 24/485 (4%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K    +W    R+ +      A ++  L  ++  +K      N              F 
Sbjct: 549  HKLGSGQWEKAKRKAMQQVRDTAAELLNLYAQRAARKGHIFRFN--QHDYNAFADGFGFE 606

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   AV  G Q  ++ P  +
Sbjct: 607  ETPDQATAINAVIQDMVSGKSMDRLICGDVGFGKTEVALRAAFVAVTDGKQVAVLVPTTL 666

Query: 333  LAQQHYEFIKKYT----QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            LA+QHY+              + +  ++       + +AL+ +A G   IIIGTH L QD
Sbjct: 667  LAEQHYQNFSDRFGLIADQWPVKIAELSRFRSAREQAEALQSLAQGTTDIIIGTHKLIQD 726

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +++  L LVI+DE+HRFGV+Q+ +L +      VL +TATPIPRTL ++  G  D S I
Sbjct: 727  KVKFKNLGLVIIDEEHRFGVRQKEQLKKLRAEVDVLTLTATPIPRTLAMSLEGLRDFSVI 786

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
               P  R  I+T + P +    + E     L  G + Y++  ++        +++  R  
Sbjct: 787  ATAPQRRLAIRTFVHPYSE-GIIREACLRELKRGGQIYFLYNEVSTI-----QNMYTRLT 840

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            +L     + I I HG+M + + E VM  F      LL+ TT+IE GID+  A+ III  A
Sbjct: 841  TLLPE--ARINIAHGQMRESELEHVMRDFYQQRFNLLLCTTIIETGIDIPTANTIIIHRA 898

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNS---YTRLSVLKNTEDGFLIAE 622
            + FGLAQLHQLRGRVGR    +   LL  P    L+  +      +  ++    GF +A 
Sbjct: 899  DKFGLAQLHQLRGRVGRSHHQAYAYLLTPPEKAALTTQATRRLEAIQAMEELGSGFYLAM 958

Query: 623  EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
             DL+ R  G +LG  QSG  +       L+ SLL+ A K  K     +PD+    G S  
Sbjct: 959  HDLEIRGAGAVLGDSQSG--EMQEVGFSLYSSLLDAAIKSLKA--GHEPDMQQPLGVSTE 1014

Query: 683  ILLYL 687
            I L++
Sbjct: 1015 IRLHV 1019


>gi|330889122|gb|EGH21783.1| transcription-repair coupling factor [Pseudomonas syringae pv. mori
            str. 301020]
          Length = 1150

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 234/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R+  ++                    PF  T  Q++
Sbjct: 553  WQKAKRKAAEQVRDVAAELLDIYARRAAREG--YAFADPKADYATFSAGFPFEETPDQQT 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I+ +  DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P   LAQQHY 
Sbjct: 611  TIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTPLAQQHYN 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI
Sbjct: 671  SFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++
Sbjct: 731  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVR 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  N+   + E L   L  G + Y++   ++  +             L     + I 
Sbjct: 791  TFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIG 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQL
Sbjct: 843  IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 963  GDGQSGQI--QAVGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 1011


>gi|296314532|ref|ZP_06864473.1| transcription-repair coupling factor [Neisseria polysaccharea ATCC
           43768]
 gi|296838843|gb|EFH22781.1| transcription-repair coupling factor [Neisseria polysaccharea ATCC
           43768]
          Length = 753

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 151/449 (33%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 168 LNLYAQRAAQSGHKFEINEMDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 227

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT V L A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 228 DVGFGKTEVVLRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 287

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 288 SKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 347

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 348 VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 406

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 407 RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 459

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 460 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 519

Query: 601 SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 520 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 577

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLY 686
            A +D K    + PDL +  G +  I L+
Sbjct: 578 QAVRDLKK--GRQPDLDAPLGITTEIKLH 604


>gi|163751452|ref|ZP_02158676.1| transcription-repair coupling factor [Shewanella benthica KT99]
 gi|161328666|gb|EDP99815.1| transcription-repair coupling factor [Shewanella benthica KT99]
          Length = 1161

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 161/502 (32%), Positives = 254/502 (50%), Gaps = 26/502 (5%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
             L+ + S     EA        K  +  W    ++ +     +A ++  +  R+Q +   
Sbjct: 539  HLISRYSVGPDEEANLN-----KLGNETWAKAKKKAVEKIRDVAVELLDVYARRQAR--P 591

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            G   N++ +   +   + PF  T  QE+ I  +L DM     M R++ GDVG GKT VA+
Sbjct: 592  GTACNIDEQEYAQFANSFPFEETVDQETTINAVLTDMCSPISMDRLVCGDVGFGKTEVAM 651

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A   AV  G Q  I+ P  +LAQQH+E  K    +  + +E+I+       ++  ++ +
Sbjct: 652  RAAFVAVNDGKQVAILVPTTLLAQQHFENFKDRFADWPVKIEVISRFKTAKEQKLIMDEL 711

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            + G+  IIIGTH L      +  L L+++DE+HRFGV+Q+ K+        +L +TATPI
Sbjct: 712  SKGKVDIIIGTHKLLHSEGDFDNLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPI 771

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            PRTL +   G  D+S I   PA R  +KT I   +    + E L   +  G + Y++  +
Sbjct: 772  PRTLNMAMSGMRDLSIIATPPAKRLAVKTFIREYDTT-TIREALLREILRGGQVYFLHNK 830

Query: 492  IEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +E  +        +R N + E    + +   HG+M + D E VM  F +    +L+ TT+
Sbjct: 831  VETIE--------KRANEIRELLPEARVVTAHGQMRERDLERVMSDFYHQKFNVLVCTTI 882

Query: 551  IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL 608
            IE GIDV  A+ I+IE A+ FGLAQLHQLRGRVGR    +   ++   P  +S ++  RL
Sbjct: 883  IETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRSHHQAYAYMMTPHPKSISSDARKRL 942

Query: 609  SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
              +   ED   GFL+A +DL+ R  GE+LG +QSG    +     L+  +LE A K  K 
Sbjct: 943  EAIGALEDLGAGFLLATQDLEIRGAGELLGDEQSGHISKI--GFTLYMEMLEDAVKSLKE 1000

Query: 666  ILTQDPDLTSVRGQSIRILLYL 687
               ++P L+ +  +   I L +
Sbjct: 1001 --GKEPSLSQMLRRQCEIELRI 1020


>gi|71066039|ref|YP_264766.1| transcription-repair coupling factor [Psychrobacter arcticus 273-4]
 gi|71039024|gb|AAZ19332.1| transcription-repair coupling factor [Psychrobacter arcticus 273-4]
          Length = 1243

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 154/472 (32%), Positives = 241/472 (51%), Gaps = 19/472 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++ L     +A ++  +  R++ K  +GI   ++    +       F  T  Q +
Sbjct: 640  WDKAKQKALEQIHDVAAELLNMQARREAK--VGIHFKIDPSQYELFASQFAFEETPDQAN 697

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +++DM Q   M R++ GDVG GKT VA+ A   AV AG Q  ++ P  +LA QH +
Sbjct: 698  AIHAVMEDMRQNQPMDRLICGDVGFGKTEVAMRAAFIAVSAGYQVAVLVPTTLLAGQHED 757

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + +E ++    + H+   L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 758  NFRNRFADWPVRIETLSRFGGKKHQDTVLTDLAAGKVDIVIGTHKLLQPDVKFSNLGLMI 817

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++    T    + MTATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 818  VDEEHRFGVRHKERIKAIQTDVDSMSMTATPIPRTLNMALSGMRDMSIIATPPARRLAIK 877

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++       + E +   L  G + Y +   +   +      + E    L     + + 
Sbjct: 878  TFVMQ-KTEALMKEAILRELLRGGQVYLLHNDVASIE-----RMAETIRELVPE--ARVG 929

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M +   E VM  + +    +LI +T+IE GIDV +A+ IIIE A+ FGLAQLHQL
Sbjct: 930  VAHGQMQERQLEQVMQQYYHKKFNVLICSTIIETGIDVPNANTIIIERADKFGLAQLHQL 989

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR    + C LL      L  ++  RL  ++       GF++A EDL+ R  GEIL
Sbjct: 990  RGRVGRSHHQAYCYLLVPSIKGLKGDAKRRLHAIERANTLGAGFMLASEDLEIRGAGEIL 1049

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            G +QSG  + +     +   +LE A K  K    ++PDL++    +  I L+
Sbjct: 1050 GKQQSGNMQAIGFSLYMD--MLERATKAIKA--GKEPDLSTPLSLTSEINLH 1097


>gi|89094300|ref|ZP_01167241.1| transcription-repair coupling protein Mfd [Oceanospirillum sp. MED92]
 gi|89081359|gb|EAR60590.1| transcription-repair coupling protein Mfd [Oceanospirillum sp. MED92]
          Length = 1150

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 158/496 (31%), Positives = 248/496 (50%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S        H P  +    +WT   R+        A ++  +  R+  ++      +
Sbjct: 530  HLISRYTGAGDEHAPLHRLGTEQWTKAKRKAAEKARDAAAELLDIYARRAAREG--FQFS 587

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
               +   +     PF  T  Q +AI ++++DM+ K  M R++ GDVG GKT VA+ A   
Sbjct: 588  SPDEQYLQFASTFPFEETPDQAAAIGNVIRDMTAKQPMDRLVCGDVGFGKTEVAMRAAFV 647

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A ++G Q VI+ P  +LAQQHY+       +  + +E+I+       +   LE++  G  
Sbjct: 648  AAQSGKQVVILVPTTLLAQQHYQNFLDRFADWPVNIELISRFRTGKQQTAILEKLQSGSV 707

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I++GTH L    I++  L LVI+DE+HRFGVQQ+ +L    +   +L +TATPIPRTL 
Sbjct: 708  DIVVGTHKLLSGDIKFNNLGLVIIDEEHRFGVQQKERLKSLRSEVDILTLTATPIPRTLN 767

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   PA R  +KT +   +    V E +   L  G + Y++  +++  +
Sbjct: 768  MAMSGIRDLSIIATPPAKRLSVKTFVRHSDTT-LVKEAILRELLRGGQVYYLHNEVKSIE 826

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                    E  + L     + I I HG+M + + E VM  F +    +L+ TT+IE GID
Sbjct: 827  -----KTAEELSELVPE--ARIGIGHGQMRERELEQVMSDFYHKRYNILLCTTIIETGID 879

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            V +A+ III+ A+ FGLAQLHQLRGRVGR    +   LL      ++K++  RL  +++ 
Sbjct: 880  VPNANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPHKKSMTKDAIKRLEAIESA 939

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            +D   GF +A  DL+ R  GE+LG +QSG  +       L   +LE A +  K    + P
Sbjct: 940  DDLGAGFTLATHDLEIRGAGELLGEEQSGQMQT--VGFSLFMEMLEQAVESIKE--GKTP 995

Query: 672  DLTSVRGQSIRILLYL 687
            +L         I L +
Sbjct: 996  NLDQPLRHGAEINLNI 1011


>gi|260550143|ref|ZP_05824357.1| transcription-repair coupling factor [Acinetobacter sp. RUH2624]
 gi|260406898|gb|EEX00377.1| transcription-repair coupling factor [Acinetobacter sp. RUH2624]
          Length = 1153

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 150/473 (31%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555  WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613  AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  + +E+++         K +E +A G+  I++GTH L Q+++Q+  L L++
Sbjct: 673  SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLADGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   L  G + Y++  +++  +        E    L     + +A
Sbjct: 793  TFV-QEHTDASIKEAILRELLRGGQVYFLHNEVDTIE-----RAAENIRMLVPE--ARVA 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 965  GEQQSGSMQAIGYS--LYMEMLEKATKAIQQ--GKTPNFDAPLSLTAEINLHI 1013


>gi|167581546|ref|ZP_02374420.1| transcription-repair coupling factor [Burkholderia thailandensis
            TXDOH]
          Length = 1175

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 232/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++     ++    +  K   +  F  T  Q 
Sbjct: 570  QWERAKRRAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYV--KFADSFGFEETPDQA 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 628  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+++I  G   I+IGTH L    +Q+ +L LV
Sbjct: 688  QTFIDRFADWPVKIVELSRFKSTKEVNAAIQQINDGSVDIVIGTHKLLSSDVQFKRLGLV 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 748  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 808  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRRAMLEELVPE--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 860  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 920  LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 980  LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1028


>gi|303257068|ref|ZP_07343082.1| transcription-repair coupling factor [Burkholderiales bacterium
            1_1_47]
 gi|302860559|gb|EFL83636.1| transcription-repair coupling factor [Burkholderiales bacterium
            1_1_47]
          Length = 1157

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 149/499 (29%), Positives = 239/499 (47%), Gaps = 20/499 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +W    ++        A ++  +   +Q +K   
Sbjct: 538  VAQLHLISRYSGADPETAPLHSLGKGDWEKARKKAALQVRDTAAELLNIYALRQSRKGYA 597

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
               ++     +       F  T+ Q +AI  + +DM     M R++ GDVG GKT VAL 
Sbjct: 598  FKFSLAD--YEAFSEAFAFEETEDQLAAINAVYRDMISDKPMDRLVCGDVGFGKTEVALR 655

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A   AV  G Q  ++ P  +LA+QH +  +    N  + +  ++          ++E I 
Sbjct: 656  AAFMAVMGGKQVAVLCPTTLLAEQHAQTFRDRFANWPVRIAELSRFRSSKEVNASIEGIK 715

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            +G   I++GTH L  D +Q+  L LV++DE+HRFGV+Q+ +L    +   +L +TATPIP
Sbjct: 716  NGTIDIVVGTHKLLSDKVQFKDLGLVVIDEEHRFGVRQKEQLKSLRSEVDILTLTATPIP 775

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL ++  G  D S I   P  R  IKT +   +    + E +   L  G + Y++  ++
Sbjct: 776  RTLSMSLEGIRDFSVIATAPQKRLAIKTFVQRESD-SLIREAVLRELKRGGQVYFLHNEV 834

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E  + +       R + L     + I + HG+M++ + E VM  F      +L+ TT+IE
Sbjct: 835  ETIENARM-----RLDQLLPE--ARIGVAHGQMNERELERVMRDFYAQRTNVLLCTTIIE 887

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV 610
             GID+ +A+ II+  A+ FGLAQLHQLRGRVGR    +   LL      ++KN+  RL  
Sbjct: 888  TGIDIPNANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPGEGAMTKNAEKRLEA 947

Query: 611  LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            +K  E    GF +A  DL+ R  GE+LG  QSG         +L+  +L+ A    K   
Sbjct: 948  IKEMEELGSGFYLAMHDLEIRGAGEVLGEHQSG--SMTGVGFDLYTQMLDSAVTALKE-- 1003

Query: 668  TQDPDLTSVRGQSIRILLY 686
             ++PDL      +  I L+
Sbjct: 1004 GREPDLLQPLEATTDINLH 1022


>gi|304310931|ref|YP_003810529.1| Transcription repair coupling factor [gamma proteobacterium HdN1]
 gi|301796664|emb|CBL44876.1| Transcription repair coupling factor [gamma proteobacterium HdN1]
          Length = 1162

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 157/474 (33%), Positives = 241/474 (50%), Gaps = 19/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+       +A ++  +  R+  K   G    +     Q  +    F  T  QE
Sbjct: 557  QWAKEKRKAQEQVHDVAAELLNIYARRAAK--AGYAFKLGKADYQAFVDGFRFEETPDQE 614

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI+ ++ DM+    M R++ GDVG GKT VA+ A   AV++G Q  I+ P  +LAQQHY
Sbjct: 615  SAIQAVMADMTSPRPMDRLVCGDVGFGKTEVAMRAAFIAVQSGKQVAILVPTTLLAQQHY 674

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K    NT + +E+++       + +AL  +  G+  I++GTH L Q++I++  L L+
Sbjct: 675  ETLKDRFSNTPVNIEVLSRFRTSKEQTRALALLEEGRIDIVVGTHKLLQENIRFKDLGLI 734

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+HRFGV+ + KL        +L +TATPIPRTL +      D+S I   PA R  I
Sbjct: 735  IVDEEHRFGVRHKEKLKAIRADVDMLTLTATPIPRTLNMALSSIRDLSIIATPPAKRLSI 794

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +    R   + E +   L  G + Y++  ++   +        +   SL     + +
Sbjct: 795  KTFVREA-RDSLIKEAILRELLRGGQVYYLHNEVSTIE-----KTAQHIESLVPE--ARV 846

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            AI HG+M + + E VM  F +    +L+ TT+IE GIDV  A+ I+++ A+  GLAQLHQ
Sbjct: 847  AIAHGQMRERELERVMTDFYHKRFNVLVCTTIIETGIDVPSANTIVMDRADKLGLAQLHQ 906

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL      LS +++ RL  +    D   GF +A  DL+ R  GE+
Sbjct: 907  LRGRVGRSHHQAYAYLLTPNAKALSDDAHKRLEAITLAHDLGAGFTLASHDLEIRGAGEL 966

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            LG +QSG    +     L+  +L  A K  K    + P+L         + L +
Sbjct: 967  LGDEQSGHMHAIGFS--LYMEMLNRAVKAIKQ--GKTPNLDQPLDLDAEVNLRI 1016


>gi|300723616|ref|YP_003712921.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus
            nematophila ATCC 19061]
 gi|297630138|emb|CBJ90775.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus
            nematophila ATCC 19061]
          Length = 1148

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 238/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   ++       +A ++  L +  Q     G     + +  Q   ++ PF  T  QE 
Sbjct: 549  WSKARQKAAEKVRDVAAEL--LDVYAQRAVRPGFAFTNDREQYQLFCQSFPFDTTPDQEQ 606

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I  +L DM Q   M R++ GDVG GKT VA+ A   ++    Q  ++ P  +LAQQHY+
Sbjct: 607  TINAVLDDMCQPIAMDRLVCGDVGFGKTEVAMRAAFLSIINNKQVAVLVPTTLLAQQHYD 666

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  + +E+++       +++ ++  A G+  IIIGTH L Q  + +  L L+I
Sbjct: 667  NFRDRFANWPVHIEVMSRFRSVREQQQVIDMAAEGKVDIIIGTHKLLQSDLCWKDLGLLI 726

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        VL +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 727  VDEEHRFGVRHKERIKAIRADVDVLTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 786

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  V E +   +  G + Y++   +E     N      R   L     + I 
Sbjct: 787  TFVREYDSL-VVRESILREILRGGQVYYLYNDVE-----NIEKTRARLEELVPE--ARIV 838

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + D E VM  F +    +L+ TT+IE GID+  A+ IIIE A+H GLAQLHQL
Sbjct: 839  VGHGQMRERDLERVMTDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHLGLAQLHQL 898

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 899  RGRVGRSHHQAYAYLLTPHPKAMTKDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 958

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     L+  LLE A    KH   ++P L  +      I L +
Sbjct: 959  GEDQSGQMASI--GFTLYMELLESAVDALKH--GREPSLEDLSNSQTDIELRM 1007


>gi|70727507|ref|YP_254423.1| transcription-repair coupling factor [Staphylococcus haemolyticus
            JCSC1435]
 gi|123748600|sp|Q4L3G0|MFD_STAHJ RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|68448233|dbj|BAE05817.1| transcription-repair coupling factor [Staphylococcus haemolyticus
            JCSC1435]
          Length = 1169

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 159/482 (32%), Positives = 245/482 (50%), Gaps = 20/482 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +  +G     +         + P+  T  Q 
Sbjct: 568  EWKKTKAKVQQSVEDIADELIALY--KEREMSVGYQYGEDTAEQSAFEMDFPYELTPDQA 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM ++  M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 626  KSIDEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +E+I+        ++  E +  G   I++GTH L    I Y  L L+
Sbjct: 686  ETLIERMQDFPVQIELISRFRSTKEVKETKEGLKSGYVDIVVGTHKLLGKDIHYKDLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++    T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 746  IVDEEQRFGVRHKERIKTMKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 806  QTYVLEQNS-NFIKEALERELSRDGQVFYLYNRVQSIYE-----KREQLQMLMPD--ANI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF NG   +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+Q
Sbjct: 858  AVAHGQMTERDLEETMLSFINGEFDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSSRIGYAYFLHSANKVLTETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +Q G    +     L+  +LE A  + + I  ++PD   V    + + L  Y   E 
Sbjct: 978  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGIKEEEPDAPEVE---MELNLDAYLPAEY 1032

Query: 694  FQ 695
             Q
Sbjct: 1033 IQ 1034


>gi|254786005|ref|YP_003073434.1| transcription-repair coupling factor [Teredinibacter turnerae T7901]
 gi|237683594|gb|ACR10858.1| transcription-repair coupling factor [Teredinibacter turnerae T7901]
          Length = 1157

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 148/474 (31%), Positives = 239/474 (50%), Gaps = 21/474 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  +++ ++      +   +   +     PF  T  Q+S
Sbjct: 561  WQKAKRKAAEQIRDVAAELLEIYAKRKARQG--FSYDNPKEAYDQFAAGFPFEETPDQQS 618

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ +  DM     M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQH++
Sbjct: 619  AIRAVRDDMLSAQPMDRLVCGDVGFGKTEVAMRAAFIAVQNSKQVAVLVPTTLLAQQHFD 678

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  + +E+++    Q       +R+  G   I+IGTH L     +Y  L LVI
Sbjct: 679  NFKDRFADWPVNIEVVSRFRSQKELTNVQQRLEQGSVDILIGTHKLILGDFKYPNLGLVI 738

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+  L    T   +L +TATPIPRTL ++  G  D+S I   PA R  +K
Sbjct: 739  IDEEHRFGVRQKEALKALRTEVDILTLTATPIPRTLNMSMNGIRDLSIIATPPAKRLSVK 798

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSI 518
            T +   +  + + E +   +  G + Y++  ++        +S+  R   +      + I
Sbjct: 799  TFVRESDD-NLIKEAILREILRGGQVYFLHNEV--------KSIDRRAQEIQALVPEARI 849

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + ESVM  F +    +L++TT+IE GIDV  A+ I+IE A+ FGLAQLHQ
Sbjct: 850  GIGHGQMRERELESVMSDFYHKRFNILVSTTIIETGIDVPTANTIVIERADKFGLAQLHQ 909

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L+      ++ ++  RL  +   +D   GF +A  DL+ R  GE+
Sbjct: 910  LRGRVGRSHHQAYAYLMTPNKKAMTNDALKRLEAIAEAQDLGAGFTLASHDLEIRGAGEL 969

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            LG +QSG  + +     +   +LE A K  +    +  DL     Q + I L +
Sbjct: 970  LGDEQSGQMQAIGFSLYMD--MLERAVKAIQE--GKTIDLDQPEQQGVEINLRI 1019


>gi|293603936|ref|ZP_06686351.1| transcription-repair coupling factor [Achromobacter piechaudii ATCC
            43553]
 gi|292817773|gb|EFF76839.1| transcription-repair coupling factor [Achromobacter piechaudii ATCC
            43553]
          Length = 1160

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 146/473 (30%), Positives = 228/473 (48%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  ++  ++      N+     Q       F  T  Q 
Sbjct: 567  QWDKARRKAAKQVRDTAAELLALYAQRAAREG--FAFNLPLNDYQAFAEGFGFEETVDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH 
Sbjct: 625  AAIEAVIADMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVANGKQVALLCPTTLLAEQHA 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + V  ++          A+E I  G+  I+IGTH +    +++ +L LV
Sbjct: 685  QTFSDRFADWPVRVVELSRFRSAKEVAAAVEGINDGRVDIVIGTHKILSKDVKFKRLGLV 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I   P  R  I
Sbjct: 745  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAI 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +   +    + E L   L  G + Y++  ++E        +   R   L     + I
Sbjct: 805  KTFVRREDG-STLREALLRELKRGGQCYFLHNEVETIH-----NRRARLEELVPE--ARI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQ
Sbjct: 857  AVAHGQMPERELEQVMKGFYQQRYNVLLCTTIIETGIDVPSANTIVIHRADRFGLAQLHQ 916

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTR---LSVLKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL      ++ N+  R   +  ++    GF +A  DL+ R  GE+
Sbjct: 917  LRGRVGRSHHQAYAYLLTPGEDAITNNAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEV 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG  QSG          +++ +L  A +  +    ++PDL +    +  + L+
Sbjct: 977  LGDSQSG--NIQEVGFSMYNEMLNEAVRALRA--GEEPDLDAPFNLACEVNLH 1025


>gi|258509516|ref|YP_003172267.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG]
 gi|257149443|emb|CAR88416.1| Transcription-repair coupling factor [Lactobacillus rhamnosus GG]
 gi|259650784|dbj|BAI42946.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG]
          Length = 1175

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 241/453 (53%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R   A  E +A ++  L  +++ +   G     +  + QK     P+  T  Q 
Sbjct: 567  EWQKTKRIVAARIEDIADELIDLYAKREAE--KGYAFGPDDDLQQKFEDEFPYPETPDQL 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + K+I +DM +   M R+L GDVG GKT VAL A   AV+ G Q  I+ P  ILAQQH+
Sbjct: 625  RSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPTTILAQQHF 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +K    +  + + +++        +  ++ + +G   I++GTH L    + +  L L+
Sbjct: 685  DTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + ++ Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 745  VIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPI 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  +  G + +++  ++E+ + +  +        L     +SI
Sbjct: 805  QTFVMEQN-PGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ-----LEELVPD--ASI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+V+  F +G   +L+ TT+IE G+D+ +A+ +IIENA+H+GL+QL+Q
Sbjct: 857  GYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++    +Y P   L++ +  RL  +K+      GF IA  DL  R  G +
Sbjct: 917  LRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +L+ A    + +
Sbjct: 977  LGKQQHGFIDSVGYD--LYTQMLQEAVNKRRGL 1007


>gi|91776101|ref|YP_545857.1| transcription-repair coupling factor [Methylobacillus flagellatus
           KT]
 gi|91710088|gb|ABE50016.1| transcription-repair coupling factor [Methylobacillus flagellatus
           KT]
          Length = 1134

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 150/472 (31%), Positives = 230/472 (48%), Gaps = 19/472 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++ L      A ++  L  ++  +K     + +     +      PF  T  Q +
Sbjct: 542 WEKAKKKALKQVRDTAAELLNLYAQRAARKGHAFKLGLHD--YEAFAEGFPFEETADQLA 599

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+ ++ DM     M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH+ 
Sbjct: 600 AIEAVISDMQSGRPMDRLVCGDVGFGKTEVALRAAFVAVMGGRQVAVLVPTTLLAEQHFH 659

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  +  + +  I+       + +AL+ +  G   I+IGTH L Q  +++  L LVI
Sbjct: 660 NFSDRFADWPVKITEISRFRTAKEQAQALKGLEDGSIDIVIGTHRLIQKDVKFKNLGLVI 719

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV+Q+ +L        VL +TATPIPRTL +   G  + S I   P  R  IK
Sbjct: 720 LDEEHRFGVRQKEQLKAMRAEVDVLTLTATPIPRTLSMAMEGLREFSVIATPPQKRLAIK 779

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T     +    + E        G + Y++  +++           E+   +     + I 
Sbjct: 780 TFATHYSE-GIIREAAMREFKRGGQVYFLHNEVDTIFVMK-----EKLEKILPE--ARIG 831

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG++ + + E VM  F      LL+ TT+IE GIDV  A+ II+  A+ FGLAQLHQL
Sbjct: 832 IAHGQLRERELEHVMRDFYQQRFNLLLCTTIIETGIDVPTANTIIMNRADMFGLAQLHQL 891

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL  P   ++  +  RL  ++  ED   GF +A  DL+ R  GE+L
Sbjct: 892 RGRVGRSHHQAYAYLLTDPDRNITPQAQKRLDAIQLLEDLGAGFHLAMHDLEIRGAGELL 951

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
           G  QSG  + +     L+  +L  A K  K    ++PDL++  G +  I L+
Sbjct: 952 GDSQSGEMQEI--GFTLYSEMLSHAVKQLKA--GKEPDLSAPLGVTTEINLH 999


>gi|313112804|ref|ZP_07798451.1| transcription-repair coupling factor [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624874|gb|EFQ08182.1| transcription-repair coupling factor [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 1157

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 147/478 (30%), Positives = 236/478 (49%), Gaps = 21/478 (4%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           DLL + + P   E   +     K    EW     +     E +A ++  L  R+  ++  
Sbjct: 538 DLLSRYTAPGDEEKVKLA----KLGGAEWQRTRAKVKKATEEMAQELIELYARR--RQAT 591

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G     +G   +       +  T  Q +A  +I QDM +   M R+L GDVG GKT VAL
Sbjct: 592 GYAFPPDGDWQRDFETRFDYDETDDQLNATAEIKQDMEKGWPMDRLLCGDVGVGKTEVAL 651

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A    V  G Q  I+AP  +LA QHY  I    +   + VE+++       +++ L  +
Sbjct: 652 RAAFKCVMGGKQCAILAPTTLLAWQHYNTILSRMEAFPVKVEMMSRFRTAKQQKETLRGL 711

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G   I++GTH L    ++++ L LVI+DE+ RFGV+ + KL +      +L ++ATPI
Sbjct: 712 QSGSVDIVVGTHRLLSKDVKFHDLGLVIIDEEQRFGVKHKEKLKENFIGVDMLTLSATPI 771

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL +   G  D+S I + P  R+P++T ++  N +  + E +K  L+ G + Y++  +
Sbjct: 772 PRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDV-ILAEAMKKELARGGQVYYLHNR 830

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           ++     N  +     + L     + I I HG+M++ +   V     NG   +L+ TT+I
Sbjct: 831 VD-----NIEACAAHVSKLVPG--ARIGIAHGKMTEEELNPVWQHLLNGEIDILVCTTLI 883

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLS 609
           E GIDV + + +IIE+A+  GLAQL+Q+RGRVGR    +     +     L+  +  RLS
Sbjct: 884 ETGIDVRNCNTLIIEDADRMGLAQLYQIRGRVGRSGRKAYAYFTFRRDKTLTDIAQKRLS 943

Query: 610 VLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ++       GF IA  DL+ R  G +LG  Q G  + +     L+  +L  A   AK
Sbjct: 944 AIREFTAFGSGFRIAMRDLQIRGAGSLLGHSQHGHMEAVGYD--LYVKMLGQAIARAK 999


>gi|299770361|ref|YP_003732387.1| transcription-repair coupling factor [Acinetobacter sp. DR1]
 gi|298700449|gb|ADI91014.1| transcription-repair coupling factor [Acinetobacter sp. DR1]
          Length = 1153

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 150/473 (31%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555  WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFGFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613  AIEATLHDMQQARPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  + +E+++         K +E +  G+  I++GTH L Q+++Q+  L L++
Sbjct: 673  SFKDRFADWPVRIEVLSRFGSSKTHTKNIEDLIAGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +        V E +   L  G + Y++  +++  +        E    L     + +A
Sbjct: 793  TFVQEHTE-ASVKEAILRELLRGGQVYFLHNEVDTIE-----RAAENIRVLVPE--ARVA 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEQVMQQFYHKEFNVLVCSTIIETGIDVPNANTILIERADKLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 965  GEQQSGSMQAIGYS--LYMEMLEKATKAIQQ--GKTPNFDAPLSLTAEINLHI 1013


>gi|17546361|ref|NP_519763.1| transcription-repair coupling factor protein [Ralstonia solanacearum
            GMI1000]
 gi|17428658|emb|CAD15344.1| probable transcription-repair coupling factor protein [Ralstonia
            solanacearum GMI1000]
          Length = 1157

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 156/472 (33%), Positives = 232/472 (49%), Gaps = 19/472 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++    P+       +    +  F  T  Q 
Sbjct: 564  QWDKAKRKAAQQIRDTAAELLNLYARRALRQGFAFPLAPND--YEAFAESFGFDETPDQA 621

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QHY
Sbjct: 622  AAITAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHY 681

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +     +  + +  I+    +     A+E I  G   I+IGTH L    +++ +L LV
Sbjct: 682  QTLADRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVKFNRLGLV 741

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 742  IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 801

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +   +   L     + +
Sbjct: 802  KTFV-RREEDGVLREAILRELKRGGQVYFLHNEVETIE-----NKRAKLEELVPE--ARV 853

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQ
Sbjct: 854  AVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQ 913

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H    L+K S  RL     ++    GF +A  DL+ R  GE+
Sbjct: 914  LRGRVGRSHHQAYAYLLVHDADGLTKQSQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV 973

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG KQSG    +  Q  L+  +L  A K  K    ++PDL +    +  I L
Sbjct: 974  LGDKQSGEISEIGFQ--LYTDMLNQAVKSLKA--GKEPDLMAPLAATTEINL 1021


>gi|126641668|ref|YP_001084652.1| transcription-repair coupling protein [Acinetobacter baumannii ATCC
           17978]
          Length = 1054

 Score =  366 bits (939), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 456 WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFAFELDQSLYMQFASGFAYEETLDQAN 513

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 514 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFIAVQNGKQVAVLVPTTLLAQQHYE 573

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 574 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 633

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 634 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 693

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +    + E +   L  G + Y++  ++E  +        E    L     + +A
Sbjct: 694 TFV-QEHTDASIKEAILRELLRGGQVYFLHNEVETIE-----RAAENIRVLVPE--ARVA 745

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLHQL
Sbjct: 746 VAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLHQL 805

Query: 580 RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 806 RGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 865

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 866 GEQQSGSMQAIGYG--LYMEMLEKATKAIQQ--GKTPNFDAPLSLTAEINLHI 914


>gi|172060905|ref|YP_001808557.1| transcription-repair coupling factor [Burkholderia ambifaria MC40-6]
 gi|171993422|gb|ACB64341.1| transcription-repair coupling factor [Burkholderia ambifaria MC40-6]
          Length = 1156

 Score =  366 bits (939), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 231/473 (48%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++     ++    +  K   +  F  T  Q 
Sbjct: 553  QWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYV--KFAESFGFEETPDQA 610

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 611  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 670

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +          + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 671  QTFVDRFAEWPVRIVELSRFKTTKEVNAAIAQINEGTVDIVIGTHKLLSSDVQFKRLGLV 730

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 731  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 790

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 791  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRRAMLEELVPE--ARI 842

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 843  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 902

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 903  LRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 962

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 963  LGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1011


>gi|308050222|ref|YP_003913788.1| transcription-repair coupling factor [Ferrimonas balearica DSM 9799]
 gi|307632412|gb|ADN76714.1| transcription-repair coupling factor [Ferrimonas balearica DSM 9799]
          Length = 1156

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 159/472 (33%), Positives = 241/472 (51%), Gaps = 18/472 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+       +A ++  +  R++ K   G P+  +    Q+     PF  T  Q +
Sbjct: 554  WDKARRKAAEKVRDVAAELLDIYARREAKPGHGFPM--DELEYQRFSAAFPFEETVDQAA 611

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L+DM++   M R++ GDVG GKT VA+ A   AV  G Q  ++ P  +LAQQHYE
Sbjct: 612  AIGAVLRDMTKPQAMDRLVCGDVGFGKTEVAMRAAFVAVNGGKQVAVLVPTTLLAQQHYE 671

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    +  + VE+++     + ++K LE++A G+  I+IGTH L Q  I +  L L+I
Sbjct: 672  NFRDRFADWPVRVEVMSRFRTASEQKKVLEQLAEGKVDILIGTHKLLQSEINFPDLGLLI 731

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   P  R  +K
Sbjct: 732  VDEEHRFGVRQKEKIKALRAEVDILTLTATPIPRTLNMAMSGMRDLSIIATAPKRRLSVK 791

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T + P      V E L   +  G + Y++   +E  +E       +    L     + + 
Sbjct: 792  TFVRPQEG-ALVREALMREILRGGQVYYLHNSVETIQE-----CADELAKLVPE--ARVG 843

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VM  F +G   LL+ TT+IE GID+  A+ I+IE A+ FGLAQLHQL
Sbjct: 844  IAHGQMRERELEQVMSDFHHGRFNLLVCTTIIETGIDIPSANTILIERADKFGLAQLHQL 903

Query: 580  RGRVGRGEEISSCILLYHPPLSKNSYTRL-SVLKNTED---GFLIAEEDLKQRKEGEILG 635
            RGRVGR    +   LL           +    ++  +D   GFL+A +DL+ R  GE+LG
Sbjct: 904  RGRVGRSHHQAYAYLLTPAKKLAKDAAKRLEAIEQLDDLGAGFLLATQDLEIRGAGELLG 963

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
             +QSG    +     L+  +LE      K    Q+P L  +      + L +
Sbjct: 964  DEQSGHISKIGFS--LYMEMLEQTVNALKS--GQEPSLDQILSDQAELELRI 1011


>gi|299066652|emb|CBJ37845.1| transcription-repair ATP-dependent coupling factor, helicase
            [Ralstonia solanacearum CMR15]
          Length = 1143

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 154/472 (32%), Positives = 233/472 (49%), Gaps = 19/472 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++    P+       +    +  F  T  Q 
Sbjct: 550  QWDKAKRKAAQQIRDTAAELLNLYARRALRQGFAFPLAPND--YETFAESFGFDETPDQA 607

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QHY
Sbjct: 608  AAITAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHY 667

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +     +  + +  I+    +     A+E I  G   I+IGTH L    +++ +L LV
Sbjct: 668  QTLADRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVKFNRLGLV 727

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        +L +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 728  IIDEEHRFGVRQKETLKTLRAEVDILTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 787

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +   +  +L     + +
Sbjct: 788  KTFV-RREEDGVLREAILRELKRGGQVYFLHNEVETIE-----NKRAKLEALVPE--ARV 839

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQ
Sbjct: 840  AVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQ 899

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H    L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 900  LRGRVGRSHHQAYAYLLVHDADGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV 959

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG KQSG    +  Q  L+  +L  A K  K    ++PDL +    +  I L
Sbjct: 960  LGDKQSGEISEIGFQ--LYTDMLNQAVKSLKA--GKEPDLMAPLAATTEINL 1007


>gi|228966803|ref|ZP_04127847.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228792902|gb|EEM40460.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 405

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 164/395 (41%), Positives = 257/395 (65%), Gaps = 3/395 (0%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA I + A+  A  Q  +M P  ILA+QHY+ + +   +  + VE
Sbjct: 1   MNRLLQGDVGSGKTVVAAIGLYASKLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVE 60

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++T ++  A RR  L ++  G+  I++GTHAL QD + +++L LVI DEQHRFGV QR  
Sbjct: 61  LLTSSVKGARRRDILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRV 120

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L +K  +P VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T     + +D V+ 
Sbjct: 121 LREKGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLG 180

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKE 531
            ++  + +G++AY ICP IEE ++ + ++ ++  + L  H+     + ++HGR+S  +KE
Sbjct: 181 FVEKEIKKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKE 240

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            +M  F     ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLRGRVGRG E S 
Sbjct: 241 EIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSY 300

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           C+L+  P  S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSG+P+F +A    
Sbjct: 301 CLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVH 359

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
               LE AR+DA  ++  +    + +  ++R  L 
Sbjct: 360 DYRALETARQDAAILVESEAFWHNDQYAALRTYLD 394


>gi|225075726|ref|ZP_03718925.1| hypothetical protein NEIFLAOT_00742 [Neisseria flavescens
           NRL30031/H210]
 gi|224952997|gb|EEG34206.1| hypothetical protein NEIFLAOT_00742 [Neisseria flavescens
           NRL30031/H210]
          Length = 653

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 151/449 (33%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 76  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 135

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 136 DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVAGLSRFNN 195

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 196 SKATKAALEGMADGTVDIVIGTHKLVQDDIRFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 255

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 256 VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 314

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 315 RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 367

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ +T+IE GID+ +A+ III   + FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 368 RFNVLLCSTIIETGIDIPNANTIIINRTDKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 427

Query: 601 SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 428 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLK 485

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLY 686
            A +D K    + PDL +  G +  I L+
Sbjct: 486 QAVRDLKK--GRQPDLDAPLGITTEIKLH 512


>gi|210623288|ref|ZP_03293705.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275]
 gi|210153689|gb|EEA84695.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275]
          Length = 1147

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 142/467 (30%), Positives = 233/467 (49%), Gaps = 22/467 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT    +     E +  ++  L  +++  K  G   + +    ++     P+  T  Q 
Sbjct: 566  EWTKAKAKVRKEIEDMTEELINLYAKRE--KIKGYKFSKDTVWQKEFEDKFPYQETDDQL 623

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AIKD  +DM     M R++ GDVG GKT VA+ A   A   G Q  ++ P  ILAQQHY
Sbjct: 624  KAIKDTKKDMESPRVMDRLICGDVGYGKTEVAIRAAFKACMDGKQVAVLVPTTILAQQHY 683

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +   +  I VE+++       ++K +E    G   ++IGTH +    I+  KL LV
Sbjct: 684  NTFSERFADYPIRVEVLSRFKTPKQQKKIIEDAKKGMVDVLIGTHRIISKDIELPKLGLV 743

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ +  L +      VL ++ATPIPRTL ++  G  D++ I E P  R P+
Sbjct: 744  VIDEEQRFGVKHKETLKKVKNTVDVLTLSATPIPRTLHMSLSGIRDMTVIEEPPQERHPV 803

Query: 459  KTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             T +      D +I+  ++  +S G + +++  ++E         + ++   L     + 
Sbjct: 804  ITYVTEA--RDSIIQDEIEKEISRGGQVFFVYNRVE-----GIEGIADKVRKLVPD--AR 854

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A+ HGRMS    E ++ +F      +L+ TT+IE G+D+ +A+ +II +A+  GLAQL+
Sbjct: 855  VAVAHGRMSSKTLEDIIIAFMQKEFDVLVCTTIIETGMDIANANTMIIYDADKMGLAQLY 914

Query: 578  QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR        L+Y  +  LS+ +  RL  +K       GF IA  DL+ R  G+
Sbjct: 915  QLRGRVGRSTRQGYAFLMYERNKSLSEIAEKRLKAIKEFTEFGSGFKIAMRDLEIRGAGD 974

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK---HILTQDPDLTSV 676
            +LG +Q G    +     L+  +L  A +  K    I+  D ++   
Sbjct: 975  VLGAQQHGHMAVIGYD--LYVKMLNEAIRKIKGEPEIVEVDVEIDLP 1019


>gi|325523528|gb|EGD01838.1| transcription-repair coupling factor [Burkholderia sp. TJI49]
          Length = 827

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 232/473 (49%), Gaps = 19/473 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R+        A ++  L  R+  ++     +     +  K   +  F  T  Q 
Sbjct: 223 QWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALEPRDYV--KFAESFGFEETPDQA 280

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 281 AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 340

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 341 QTFADRFADWPVRIVELSRFKTTKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 400

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 401 IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 460

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 461 KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEELVPE--ARI 512

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           AI HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 513 AIAHGQMHERELERVMRDFVGQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 572

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
           LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 573 LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 632

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
           LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 633 LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 681


>gi|226953095|ref|ZP_03823559.1| transcription-repair coupling factor [Acinetobacter sp. ATCC 27244]
 gi|226836187|gb|EEH68570.1| transcription-repair coupling factor [Acinetobacter sp. ATCC 27244]
          Length = 1153

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 155/475 (32%), Positives = 245/475 (51%), Gaps = 23/475 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G    ++     +      +  T  Q +
Sbjct: 555  WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFAFELDHIAYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613  AIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +T + +E+++         K +E +A G+  I++GTH + Q++IQ+  L L+I
Sbjct: 673  SFKDRFADTAVRIEVLSRFGSNKTHLKIIEDLADGKVDIVVGTHKILQENIQFNNLGLMI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSS 517
            T +   +  D + E +   L  G + Y++  ++E           ER      H    + 
Sbjct: 793  TFV-QEHTDDSIKEAILRELLRGGQVYFLHNEVETI---------ERAAENIRHLVPEAR 842

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ IIIE A+  GLAQLH
Sbjct: 843  VAVAHGQMRERELEQVMQQFYHKDYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQLH 902

Query: 578  QLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGE 632
            QLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE
Sbjct: 903  QLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGE 962

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            +LG +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 963  LLGEQQSGSMQAIGYS--LYMEMLEKATKAIQK--GKTPNFDAPLSLTAEINLHM 1013


>gi|327438085|dbj|BAK14450.1| transcription-repair coupling factor [Solibacillus silvestris
            StLB046]
          Length = 1170

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 144/477 (30%), Positives = 245/477 (51%), Gaps = 23/477 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++     + +A  +  L  +++ +   G   + +    +      P+  T+ Q 
Sbjct: 569  EWKKTHKKVSNAVQDIADDLIKLYAKREAE--KGYAFSPDSDEQRGFEAAFPYEETEDQL 626

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I ++ +DM ++  M R++ GDVG GKT VA+ A   A+  G Q   + P  ILAQQHY
Sbjct: 627  RTIAEVKKDMERERPMDRLVCGDVGYGKTEVAIRAAFKAILDGKQVAFLVPTTILAQQHY 686

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I K  ++  I V +++    +  + + L+ +  G   I+IGTH +    + Y  L L+
Sbjct: 687  ETISKRFEDYAINVGLLSRFRSKKQQTETLKGLKEGTVDIVIGTHRILSKDVVYQDLGLL 746

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  D+S I   P  R P+
Sbjct: 747  IVDEEQRFGVTHKEKIKQLRTNVDVLTLTATPIPRTLHMSMVGVRDLSVIETPPQNRFPV 806

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  ++ G + +++  ++E     +    VE    L     + +
Sbjct: 807  QTYVMEHNG-ALVREAIEREMARGGQVFYLYNRVE-----DITRRVEEIQMLVPD--ARV 858

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++   ESV+ SF  G   +L+ TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 859  AFAHGKMTEAKLESVILSFIEGEYDVLVTTTIIETGVDIPNVNTLIVHDADRMGLSQLYQ 918

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+    +Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 919  LRGRVGRSNRIAYAYFMYERDKVLTEVAEQRLQAVKEFTELGSGFKIAMRDLSIRGAGNL 978

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            LG +Q G    +     L+  +LE A ++ +  + ++        Q + I+L++  Y
Sbjct: 979  LGAQQHGFIDSIGFD--LYSQMLEEAVEERRTGVKRE------EKQDVEIMLHVDAY 1027


>gi|193077268|gb|ABO12050.2| transcription-repair coupling protein [Acinetobacter baumannii ATCC
            17978]
          Length = 1153

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555  WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613  AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFIAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673  SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   L  G + Y++  ++E  +        E    L     + +A
Sbjct: 793  TFV-QEHTDASIKEAILRELLRGGQVYFLHNEVETIE-----RAAENIRVLVPE--ARVA 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 965  GEQQSGSMQAIGYG--LYMEMLEKATKAIQQ--GKTPNFDAPLSLTAEINLHI 1013


>gi|170699745|ref|ZP_02890779.1| transcription-repair coupling factor [Burkholderia ambifaria
            IOP40-10]
 gi|170135336|gb|EDT03630.1| transcription-repair coupling factor [Burkholderia ambifaria
            IOP40-10]
          Length = 1156

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 231/473 (48%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++     +     +  K   +  F  T  Q 
Sbjct: 553  QWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALEPRDYV--KFAESFGFEETPDQA 610

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 611  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 670

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 671  QTFVDRFADWPVRIVELSRFKTTKEVNAAIAQINEGTVDIVIGTHKLLSSDVQFKRLGLV 730

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 731  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 790

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 791  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRRAMLEELVPE--ARI 842

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 843  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 902

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 903  LRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 962

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 963  LGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1011


>gi|317402005|gb|EFV82605.1| transcription-repair coupling factor [Achromobacter xylosoxidans C54]
          Length = 1160

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 147/473 (31%), Positives = 228/473 (48%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  ++  ++      N+     Q       F  T  Q 
Sbjct: 567  QWDKARRKAAKQVRDTAAELLALYAQRAAREG--FAFNLPLNDYQAFAEGFGFEETADQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH 
Sbjct: 625  AAIEAVIADMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVANGKQVALLCPTTLLAEQHA 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + V  ++          A+E I  G+  I+IGTH +    +++ +L LV
Sbjct: 685  QTFSDRFADWPVRVVELSRFRSAKEVSAAIEGINDGRVDIVIGTHKILSKDVKFKRLGLV 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I   P  R  I
Sbjct: 745  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAI 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +   +    + E L   L  G + Y++  ++E        +   R   L     + I
Sbjct: 805  KTFVRREDG-STLREALLRELKRGGQCYFLHNEVETIH-----NRRARLEELVPE--ARI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + D E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQ
Sbjct: 857  AVAHGQMPERDLEQVMKGFYQQRYNVLLCTTIIETGIDVPSANTIVIHRADRFGLAQLHQ 916

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTR---LSVLKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL      ++ N+  R   +  ++    GF +A  DL+ R  GE+
Sbjct: 917  LRGRVGRSHHQAYAYLLTPGEDAITSNAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEV 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG  QSG          +++ +L  A +  +    ++PDL +    +  + L+
Sbjct: 977  LGDSQSG--NIQEVGFSMYNEMLNEAVRALRA--GEEPDLDAPFNLACEVNLH 1025


>gi|268318833|ref|YP_003292489.1| Transcription-repair-coupling factor [Lactobacillus johnsonii
           FI9785]
 gi|262397208|emb|CAX66222.1| Transcription-repair-coupling factor [Lactobacillus johnsonii
           FI9785]
          Length = 1165

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 232/448 (51%), Gaps = 17/448 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   +   +  E +A  +  L  +++ +   G   + +  + ++     P+  T  Q 
Sbjct: 563 EWTKTKKRVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQKEFEDAFPYPETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I  DM     M R+L GDVG GKT VAL A   A+  G Q   +AP  ILAQQH+
Sbjct: 621 RSIREIKADMESTKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQHF 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E ++   ++  +   +++        ++ +E +  G+  +++GTH L    +Q+  L L+
Sbjct: 681 ETMQDRFKDFPVNCALLSRFQTPTEVKEIVEGVKSGKIDMVVGTHRLLSKDVQFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IIDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPI 800

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++       V E +   +    + +++  +I++  +   +        L     + I
Sbjct: 801 QTYVME-EMPSIVREAVLREMKRNGQVFFLHNRIDDIDKIVSQ-----LEELIPE--AKI 852

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +I+E+A+H+GL+QL+Q
Sbjct: 853 EYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYGLSQLYQ 912

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGR+GR   ++    LY P   L++    RLS +++      GF IA  DL  R  G +
Sbjct: 913 LRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIAMRDLSIRGAGNM 972

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARK 661
           LG +Q G    +     L+  +L+ A K
Sbjct: 973 LGKQQHGFIDSVGYD--LYAQMLDEAIK 998


>gi|238026956|ref|YP_002911187.1| transcription-repair coupling factor [Burkholderia glumae BGR1]
 gi|237876150|gb|ACR28483.1| Transcription-repair coupling factor [Burkholderia glumae BGR1]
          Length = 1157

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 231/473 (48%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++     +     +  K   +  F  T  Q 
Sbjct: 552  QWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALEPRDYV--KFAESFGFEETPDQA 609

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 610  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 669

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + V  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 670  QTFIDRFADWPVRVAELSRFKSTKEVNAAIRQINEGSVDIVIGTHKLLSSDVQFKRLGLV 729

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 730  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 789

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +            +L     + I
Sbjct: 790  KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIENRKT-----MLEALVPE--ARI 841

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            AI HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 842  AIAHGQMHERELERVMREFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 901

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 902  LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 961

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDL +    +  I L+
Sbjct: 962  LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GREPDLLAPLAATTEINLH 1010


>gi|78043233|ref|YP_359072.1| transcription-repair coupling factor [Carboxydothermus
            hydrogenoformans Z-2901]
 gi|77995348|gb|ABB14247.1| transcription-repair coupling factor [Carboxydothermus
            hydrogenoformans Z-2901]
          Length = 1160

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 144/464 (31%), Positives = 238/464 (51%), Gaps = 20/464 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W        A    +A  +  L  ++  K   G   + +    ++     P+  T  Q 
Sbjct: 569  DWQRVKNRVKAAVREMAEGLLELYAKRMAK--PGFAFSPDTVWQKEFEERFPYEETPDQL 626

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+++ +DM +   M R+L GDVG GKT VAL A   AV  G Q  ++ P  +LAQQHY
Sbjct: 627  KAIEEVKRDMEKPKVMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVLTPTTLLAQQHY 686

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+      + + +++       +++ ++ +  G+  I+IGTH L QD +Q+Y L L+
Sbjct: 687  NTFKERFSGYPVEIRLLSRFQTAREQKEIIKELKRGKVDIVIGTHRLLQDDVQFYDLGLM 746

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV Q+ +L        VL +TATPIPRTL +  +G  D+S +   P  R P+
Sbjct: 747  IVDEEQRFGVAQKERLKILTETVDVLTLTATPIPRTLHMALMGIRDLSVLNTPPENRFPV 806

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  +    + + ++  L  G + +++  ++ +  E     V     SL     + +
Sbjct: 807  QTYVLEEDPF-IIRDAIRRELGRGGQVFFVHNRVSDIDE-----VAAWVQSLVPE--AKV 858

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M +   E VM  F +G   +L++TT+IE GID+ + + +II+NA+ FGLAQL+Q
Sbjct: 859  AVAHGQMKEEQLERVMLEFISGKYDVLVSTTIIETGIDLPNVNTLIIKNADRFGLAQLYQ 918

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+   L+Y     L + +  RL+ +K       G  +A  DL+ R  G +
Sbjct: 919  LRGRVGRSNRIAYAYLMYEKDKVLREAAEKRLAAIKEFTEFGSGLKLAMRDLEIRGAGNL 978

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ---DPDLT 674
            LG +Q G         +++  LL+    + K  +T    +P L 
Sbjct: 979  LGPEQHGHI--AAVGFDMYMKLLQETVAELKGQVTSEEVEPQLE 1020


>gi|237748656|ref|ZP_04579136.1| transcription-repair coupling factor [Oxalobacter formigenes OXCC13]
 gi|229380018|gb|EEO30109.1| transcription-repair coupling factor [Oxalobacter formigenes OXCC13]
          Length = 1152

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 142/479 (29%), Positives = 232/479 (48%), Gaps = 19/479 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +W    ++        A ++  L  R+  +   G P  +     +    +  F 
Sbjct: 548  HTLGSGQWEKAKQKAAQQIHDTAAELLDLYARRSMR--KGFPFPLTKNDYEAFADSFGFE 605

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI  +++DM+    M R++ GDVG GKT VAL A   AV  G Q  ++AP  +
Sbjct: 606  ETPDQAAAIASVMEDMTSDKPMDRLICGDVGFGKTEVALRAAFIAVMGGKQVALLAPTTL 665

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QH +  +    +  + +  ++    Q    + ++ +  G   I+IGTH L    + +
Sbjct: 666  LAEQHAQTFRDRFADWPVRISELSRFRTQKQVNQTIKGMEDGTVDIVIGTHKLLSKDVSF 725

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +L L+I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G    S I   P
Sbjct: 726  NRLGLIIIDEEHRFGVRQKEALKAIRAEVDVLTLTATPIPRTLGMALDGLRSFSIIATAP 785

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  IKT +   N    + E     L  G + Y++  ++E  +            +L  
Sbjct: 786  QKRLAIKTFVRSEND-SVIREACMRELKRGGQVYFLHNEVETIENRRI-----MLENLLP 839

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I + HG+M + + E VM  F +    +L+ TT+IE GIDV +A+ +++  A+ FG
Sbjct: 840  E--ARIGVAHGQMHERELEKVMRDFVSHRYNILLCTTIIETGIDVPNANTMVMHRADKFG 897

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV---LKNTEDGFLIAEEDLKQ 627
            LAQLHQLRGR+GR    +   LL +    LSK +  RL     ++    GF +A  DL+ 
Sbjct: 898  LAQLHQLRGRIGRSHHQAYAYLLVNDTQTLSKQAQRRLEAIRQMEELGSGFFLAMHDLEI 957

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE+LG +QSG  + +    +++  +L+ A +  K    ++PD  +    +  I L+
Sbjct: 958  RGAGEVLGEEQSG--EMVEIGFQMYSDMLKEAVRAMKK--GEEPDYDAPFTTTTEINLH 1012


>gi|330999600|ref|ZP_08323311.1| transcription-repair coupling factor [Parasutterella
            excrementihominis YIT 11859]
 gi|329574453|gb|EGG56023.1| transcription-repair coupling factor [Parasutterella
            excrementihominis YIT 11859]
          Length = 1157

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 148/499 (29%), Positives = 238/499 (47%), Gaps = 20/499 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +W    ++          ++  +   +Q +K   
Sbjct: 538  VAQLHLISRYSGADPETAPLHSLGKGDWEKARKKAALQVRDTTAELLNIYALRQSRKGYA 597

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
               ++     +       F  T+ Q +AI  + +DM     M R++ GDVG GKT VAL 
Sbjct: 598  FKFSLAD--YEAFSEAFAFEETEDQLAAINAVYRDMISDKPMDRLVCGDVGFGKTEVALR 655

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A   AV  G Q  ++ P  +LA+QH +  +    N  + +  ++          ++E I 
Sbjct: 656  AAFMAVMGGKQVAVLCPTTLLAEQHAQTFRDRFANWPVRIAELSRFRSSKEVNGSIEGIK 715

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            +G   I++GTH L  D +Q+  L LV++DE+HRFGV+Q+ +L    +   +L +TATPIP
Sbjct: 716  NGTIDIVVGTHKLLSDKVQFKDLGLVVIDEEHRFGVRQKEQLKSLRSEVDILTLTATPIP 775

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL ++  G  D S I   P  R  IKT +   +    + E +   L  G + Y++  ++
Sbjct: 776  RTLSMSLEGIRDFSVIATAPQKRLAIKTFVQRESD-SLIREAVLRELKRGGQVYFLHNEV 834

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E  + +       R + L     + I + HG+M++ + E VM  F      +L+ TT+IE
Sbjct: 835  ETIENARM-----RLDQLLPE--ARIGVAHGQMNERELERVMRDFYAQRTNVLLCTTIIE 887

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV 610
             GID+ +A+ II+  A+ FGLAQLHQLRGRVGR    +   LL      ++KN+  RL  
Sbjct: 888  TGIDIPNANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPGEGAMTKNAEKRLEA 947

Query: 611  LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            +K  E    GF +A  DL+ R  GE+LG  QSG    +     L+  +L+ A    K   
Sbjct: 948  IKEMEELGSGFYLAMHDLEIRGAGEVLGEHQSGSMTDVGFD--LYTQMLDSAVTALKE-- 1003

Query: 668  TQDPDLTSVRGQSIRILLY 686
             ++PDL      +  I L+
Sbjct: 1004 GREPDLLQPLEATTDINLH 1022


>gi|126662926|ref|ZP_01733924.1| transcription-repair coupling factor [Flavobacteria bacterium
           BAL38]
 gi|126624584|gb|EAZ95274.1| transcription-repair coupling factor [Flavobacteria bacterium
           BAL38]
          Length = 1087

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 139/466 (29%), Positives = 241/466 (51%), Gaps = 18/466 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++  A  + +A  +  L  +++   + G   + +  + +++  +  +  T  Q +
Sbjct: 479 WKTLKQKTKARIKHIAFNLIQLYAKRRL--DKGFQFSPDSYLQKELESSFIYEDTPDQIT 536

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM  +  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  ILA QHY 
Sbjct: 537 ATADVKADMENERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAYQHYR 596

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + V  +        + + L+++  G+  I+IGTH L   ++ +  L L+I
Sbjct: 597 TFSERLKDMPVTVSYVNRFRTAKQKSETLQKLQEGKVDILIGTHQLVNKNVVFKDLGLLI 656

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL   AT    L +TATPIPRTL  + +   D+S IT  P  R PI+
Sbjct: 657 IDEEQKFGVNVKDKLKTIATNVDTLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIE 716

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +I  N  + + + +   +  G + ++I  +IE  KE            L     + + 
Sbjct: 717 THVIRFNE-EAIRDAISYEIQRGGQVFFINNRIENIKEVAG-----MIQRLVPG--AKVG 768

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E +M +F  G   +L+ATT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 769 IGHGQMEGKKLEELMLAFMEGEFDVLVATTIIESGLDVPNANTIFINNANNFGLSDLHQM 828

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   ++  +  R++ L+       GF IA +DL+ R  G++L
Sbjct: 829 RGRVGRSNKKAFCYFITPPYSMMTGEAQKRITALEQFSELGSGFNIAMKDLEIRGAGDLL 888

Query: 635 GIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           G +QSG      F   Q  +++++ E+   + K +  ++ D+ +  
Sbjct: 889 GGEQSGFINEIGFDTYQKIMNEAIDELKENEFKDLYQEENDIETKE 934


>gi|326795840|ref|YP_004313660.1| transcription-repair coupling factor [Marinomonas mediterranea
           MMB-1]
 gi|326546604|gb|ADZ91824.1| transcription-repair coupling factor [Marinomonas mediterranea
           MMB-1]
          Length = 1136

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 146/462 (31%), Positives = 236/462 (51%), Gaps = 17/462 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   ++        A ++  +  +++ +   G   +           + PF  T  Q+ 
Sbjct: 543 WSIAKQKAAEKARDTAAELLEIYAKREAR--SGYAFSKPDDQYALFSASFPFEETPDQQM 600

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +++DMS    M R++ GDVG GKT VA+ A   AV++G Q  ++ P  +LAQQHYE
Sbjct: 601 AIDAVIKDMSTGKPMDRLVCGDVGFGKTEVAMRAAFLAVQSGKQVAVLVPTTLLAQQHYE 660

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  +  + +E+++        ++A+ R+  G++ I++GTH L Q  IQ+  L LVI
Sbjct: 661 NFCDRFADWPVQIELLSRFRSGKQTKEAISRLEEGKSDIVVGTHKLIQGDIQFSNLGLVI 720

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV+Q+ +         VL +TATPIPRTL ++  G  D+S I   PA R  +K
Sbjct: 721 IDEEHRFGVKQKDQFKALRAEIDVLTLTATPIPRTLNMSLSGIRDLSIIATPPAKRLSVK 780

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +   ++ E +   L  G + Y++  ++E       +   E    L     + + 
Sbjct: 781 TFVKKKDD-HQIKEAILRELHRGGQVYYLHNEVETI-----QKAAEFITELVPE--ARVI 832

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M + + E VM  F +    +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQL
Sbjct: 833 VGHGQMRERELEQVMSDFYHKRSNVLVCSTIIETGIDIPNANTIIINRADKFGLAQLHQL 892

Query: 580 RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL      ++ ++  RL  +        GF +A  DL+ R  GE+L
Sbjct: 893 RGRVGRSHHQAYAYLLTPQDRKVTGDAEKRLEAITMADTLGAGFTLATHDLEIRGTGELL 952

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           G  QSG  +       L   +L+ A K  K+    + D+TS 
Sbjct: 953 GEGQSGHIEH--VGFSLFMEMLDRAVKSLKNGEAPNVDITSP 992


>gi|329915573|ref|ZP_08276288.1| Transcription-repair coupling factor [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327544874|gb|EGF30242.1| Transcription-repair coupling factor [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 1120

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 146/480 (30%), Positives = 228/480 (47%), Gaps = 19/480 (3%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                 +W    R         A ++  L  R+  +K      +           +  F 
Sbjct: 520 HSLGSGQWEKAKRRAAQQIRDTAAELLNLYARRALRKGHAFEFSAHD--YANFADSFGFE 577

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  I+AP  +
Sbjct: 578 ETVDQAAAINAVIGDMTSGKPMDRLICGDVGFGKTEVALRATFVAVLGGKQVAILAPTTL 637

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QH +       +  + +  ++          A++ +A G   I+IGTH L  D +++
Sbjct: 638 LAEQHAQTFADRFADWPVKIAELSRFRSGKEINTAMKGMADGTLDIVIGTHKLLSDDVKF 697

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P
Sbjct: 698 ERLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSIIATAP 757

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             R  IKT +        + E     L  G + Y++  +++  +     +  +   +L  
Sbjct: 758 QKRLAIKTFVRSEGE-SVIREACLRELKRGGQVYFLHNEVDTIE-----NRKQMLEALLP 811

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + I + HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FG
Sbjct: 812 E--ARIGVAHGQMHERELEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFG 869

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP-----PLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           LAQLHQLRGRVGR    +   LL H       L++     +  ++    GF +A  DL+ 
Sbjct: 870 LAQLHQLRGRVGRSHHQAYAYLLVHDVAGLTKLAQRRLDAIQQMEELGSGFYLAMHDLEI 929

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           R  GE+LG  QSG    +  Q  ++  +L +A +  ++   ++PDL +    +  I L++
Sbjct: 930 RGAGEVLGDNQSGEMTEIGFQ--MYSDMLNLAVRSLRN--GKEPDLAAPLASTTEINLHV 985


>gi|221134655|ref|ZP_03560958.1| transcription-repair coupling factor [Glaciecola sp. HTCC2999]
          Length = 1170

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 241/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     +       +A ++  +  ++  K   G   ++     +K   + PF  T  QE 
Sbjct: 570  WNKAKEKAAKKVRDVAAELLNVYAKRAAK--PGFAHDIVWDDYKKFADSFPFPETPDQEQ 627

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM   + M R++ GDVG GKT VA+ A   A  AG Q  I+ P  +LAQQH+E
Sbjct: 628  AINAVLNDMGMPSAMDRLVCGDVGFGKTEVAMRAAFIAANAGKQVSILVPTTLLAQQHFE 687

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                   +    +++++  +    +R  LE +  G   I++GTH L Q+ +++  L LVI
Sbjct: 688  NFVDRFADWPFNIQVLSRFVSAKDQRAVLEGVKSGHVDIVVGTHKLIQNDVKFADLGLVI 747

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ K         +L +TATPIPRTL +   G  D+S I   PA R PIK
Sbjct: 748  IDEEHRFGVRQKDKFKALRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLPIK 807

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   N  + + E +   +  G + Y++   +   +     + ++    +     + IA
Sbjct: 808  TFVQKRNH-ETIREAVMREILRGGQVYFLHNDVATIE-----NTMQELTDIIPE--ARIA 859

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E VMD F +    +L+ TT+IE GIDV  A+ II++ A+H GLAQLHQL
Sbjct: 860  IGHGQMRERELEQVMDDFYHQRYNVLLCTTIIETGIDVPSANTIIMDRADHLGLAQLHQL 919

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++K+S  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 920  RGRVGRSHHQAYAYLLTPHPRRMTKDSIKRLEAIASLEDLGAGFALATHDLEIRGAGELL 979

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G  QSG    +     +   +L+ A K  K+   ++PD          I L +
Sbjct: 980  GDGQSGQIATVGYSLYMD--MLDKAVKAIKN--GKEPDFNIEISDKTDIELRI 1028


>gi|332971576|gb|EGK10526.1| transcription-repair coupling factor [Kingella kingae ATCC 23330]
          Length = 1126

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 147/449 (32%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 554 LNLYAQRAAQTGFKFEINELDYQAFADGFGYEETEDQAAAILAVMKDLTQAKPMDRLICG 613

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  +    ++    
Sbjct: 614 DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAKNFADRFADFPVKTAALSRFNS 673

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               +  L+ +A+G   I+IGTH L QD I +  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 674 SKETKATLDGMANGTVDIVIGTHKLVQDDIVFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 733

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L +TATPIPRTL +   G  D S IT  P+ R  +KT + P +    + E +   L 
Sbjct: 734 VDLLTLTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSIQEAVLRELK 792

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  +++  +     ++ ++  +L     + I + HG++ + + E VM  F N 
Sbjct: 793 RGGQVFFLHNEVDTIE-----NMRDKLENLLPE--ARIGVAHGQLRERELEQVMRDFLNQ 845

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 846 KFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEFI 905

Query: 601 SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 906 TKDAEKRLDAIAAADELGAGFALAMQDLEIRGAGEILGEGQSG--EMMQVGLTLYTEMLK 963

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLY 686
            A +D K    + PDL +  G S  I L+
Sbjct: 964 QAVRDLKK--GRVPDLDAPLGVSTEIKLH 990


>gi|317057762|ref|YP_004106229.1| transcription-repair coupling factor [Ruminococcus albus 7]
 gi|315450031|gb|ADU23595.1| transcription-repair coupling factor [Ruminococcus albus 7]
          Length = 1156

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 136/446 (30%), Positives = 211/446 (47%), Gaps = 17/446 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT    +  A  + +A ++  L    Q +   G     +    +       +  T  Q 
Sbjct: 561 EWTRTRNKVRAAVKDMAEELTKLYA--QRQMAKGYSFEPDDDWQRDFEERFDYQETDDQL 618

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI +I  DM ++  M R+L GDVG GKT VAL A    V  G Q  I+AP  +LA QHY
Sbjct: 619 RAINEIKGDMEKQTPMDRLLCGDVGFGKTEVALRAAFKCVVNGKQCAILAPTTVLAWQHY 678

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +   K  ++  + VE+++       +   +  +  G   +IIGTH L    +++  L L 
Sbjct: 679 QTAIKRFEHFAVKVELLSRFRKPKEQSAIVRELKRGTIDLIIGTHRLVSKDVEFKDLGLA 738

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + K  +      +L ++ATPIPRTL +   G  D+S I E P  R PI
Sbjct: 739 IIDEEQRFGVAHKEKFKENHPGVDILTLSATPIPRTLNMALSGIRDMSVIEEPPMDRHPI 798

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T +I  N    +++ +   L  G + Y+I  +I+    +  R              + I
Sbjct: 799 QTYVIEHND-GVILQAITKELRRGGQVYYIHNRIDTILRTVDRLQN-------SIPDARI 850

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              HG+M + +   +          +L+ TT+IE GIDV + + +IIE+A+  GL+QLHQ
Sbjct: 851 GYAHGQMDEKELSEIWRQVVEHEIDILVCTTLIETGIDVPNVNTLIIEDADRLGLSQLHQ 910

Query: 579 LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR    +     +     L++ +  RL  ++       GF IA  DL+ R  G I
Sbjct: 911 LRGRVGRSNRRAFAYFTFKRGKVLNEIASKRLQAIREFTQFGSGFHIAMRDLEIRGAGSI 970

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIA 659
           L  KQ G  + +     ++  LL  A
Sbjct: 971 LSAKQHGHMEAVGYD--MYLRLLNEA 994


>gi|262372249|ref|ZP_06065528.1| transcription-repair coupling factor [Acinetobacter junii SH205]
 gi|262312274|gb|EEY93359.1| transcription-repair coupling factor [Acinetobacter junii SH205]
          Length = 1153

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 152/473 (32%), Positives = 246/473 (52%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G   +++     +      +  T  Q +
Sbjct: 555  WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFAFDLDHTAYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM     M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHYE
Sbjct: 613  AIESTLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNNKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +T + +E+++         K +E +A G+  I++GTH + Q+++Q+  L L+I
Sbjct: 673  SFKDRFADTAVRIEVLSRFGSNKTHLKIIEDLADGKVDIVVGTHKILQENVQFKNLGLMI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +  D V E +   L  G + Y++  +++  +        E   +L     + +A
Sbjct: 793  TFV-QEHTDDSVKEAILRELLRGGQVYFLHNEVDTIE-----RAAESIRTLVPE--ARVA 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ IIIE A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLVPSLKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 965  GEQQSGSMQAIGYS--LYMEMLEKATKAIQK--GKTPNFDAPLSLTAEINLHM 1013


>gi|156741461|ref|YP_001431590.1| transcription-repair coupling factor [Roseiflexus castenholzii DSM
            13941]
 gi|156232789|gb|ABU57572.1| transcription-repair coupling factor [Roseiflexus castenholzii DSM
            13941]
          Length = 1246

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 154/454 (33%), Positives = 241/454 (53%), Gaps = 17/454 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+  A  + LA ++  L  ++Q  +      + + +  +++  + P+  T  Q 
Sbjct: 611  DWERAKRKARAAVQDLADELIGLYAQRQLAEG--HAFSPDTEWQRELEASFPYVETPDQL 668

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI D+ +DM Q   M R++ GDVG GKT VAL A   AV+ G Q  ++AP  +L QQHY
Sbjct: 669  KAIIDVKRDMEQPQPMDRLICGDVGFGKTEVALRAAFKAVQDGKQVAVLAPTTVLVQQHY 728

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + VE+I+       +   + R+A G+  +IIGTH L    + +  L L+
Sbjct: 729  DTFSRRMAAFPVRVEMISRFRSAKEQSDIVRRLARGEIDVIIGTHRLLSKDVVFKDLGLL 788

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ + ++ Q  T   V+ +TATPIPRTL +   G  D+S I   P  R PI
Sbjct: 789  VVDEEQRFGVRHKERIKQLRTNVDVITLTATPIPRTLHMALAGIRDLSVIDTPPEDRIPI 848

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT ++P +  + + E +   L  G + Y++  +++         V +R   L     + I
Sbjct: 849  KTYVLPYDE-NLIREAILRELDRGGQVYFVHNRVQSIY-----YVADRLRQLVPE--ARI 900

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG++ +   E VM  F  G   +L+ TT+IE G+DV +A+ III++A HFGLAQL+Q
Sbjct: 901  AVGHGQLDERQLERVMLDFFTGRDDVLVCTTIIESGLDVPNANTIIIDDATHFGLAQLYQ 960

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG + +   L Y    P +  +  RL  ++   +   GF IA  DL+ R  G +
Sbjct: 961  LRGRVGRGTQRAYAYLFYRSERPSTPEAQERLQAIQEATELGAGFRIAMRDLEIRGAGNL 1020

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            LG +QSG         +L+  LLE A +  K  L
Sbjct: 1021 LGAEQSGHI--AAVGFDLYSRLLEQAVRTLKQRL 1052


>gi|83588954|ref|YP_428963.1| transcription-repair coupling factor [Moorella thermoacetica ATCC
            39073]
 gi|83571868|gb|ABC18420.1| transcription-repair coupling factor [Moorella thermoacetica ATCC
            39073]
          Length = 1183

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 144/483 (29%), Positives = 241/483 (49%), Gaps = 24/483 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW           + +A ++  L  R++     G     +    ++     P++ T  Q 
Sbjct: 576  EWNKVKSRVQEAVQEMAQELLDLYARREA--IPGHAFGPDTPWQREFEEAFPYTETPDQL 633

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI ++  DM +   M R+L GDVG GKT VA+ A   AV  G Q  ++ P  ILAQQHY
Sbjct: 634  RAIAEVKADMEKPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGMQVAVLVPTTILAQQHY 693

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  K       + + +++       ++  +E +  G+  I+IGTH L    + +  L LV
Sbjct: 694  ETFKARFAPFPVKIAVLSRFCSPREQKVVVEALKRGEVDIVIGTHRLLSSDVNFKNLGLV 753

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + KL Q   +  VL MTATPIPRTL ++  G  D+S I   P  R P+
Sbjct: 754  IIDEEQRFGVAHKEKLKQLRYSVDVLTMTATPIPRTLHMSLAGVRDMSMIETPPEDRFPV 813

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TS 516
            +T ++  N  + V E ++  L  G + + +  ++++          +RF    +     +
Sbjct: 814  QTYVVEYN-PELVREAIRRELDRGGQVFIVHNRVQDI---------DRFAYHIQQLVPEA 863

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + I HG+M + + E+VM  F +G   +L++TT++E G+D+ +A+ +I++ +++FGLAQL
Sbjct: 864  RVGIGHGQMGEEELENVMLDFISGRYDVLVSTTIVENGLDIQNANTLIVDESDNFGLAQL 923

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
            +QLRGRVGR   ++     Y P   L + +  RL+ ++       G+ IA  DL+ R  G
Sbjct: 924  YQLRGRVGRTNRLAYAYFTYRPDKVLGEIAEKRLAAIREFTAFGSGYKIALRDLQIRGAG 983

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ---DPDLTSVRGQSIRILLYLY 688
              LG +Q G    +    +L+  LLE A +  K    +    P L   +   I + +  +
Sbjct: 984  NFLGPEQHGHM--VAVGFDLYCQLLEEAVRKLKEQRGEGVPRPALAEPQATPIELSVDTF 1041

Query: 689  QYN 691
              +
Sbjct: 1042 LGD 1044


>gi|261253317|ref|ZP_05945890.1| transcription-repair coupling factor [Vibrio orientalis CIP 102891]
 gi|260936708|gb|EEX92697.1| transcription-repair coupling factor [Vibrio orientalis CIP 102891]
          Length = 1153

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 150/464 (32%), Positives = 238/464 (51%), Gaps = 19/464 (4%)

Query: 229  AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
                 +A ++  +  +++ K   G    ++           PF  T  Q  AI  ++ DM
Sbjct: 562  EKVRDVAAELLDVYAKRELK--PGYKFELDRGQYATFKAGFPFEETDDQSMAINAVMSDM 619

Query: 289  SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
             Q   M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQH+E  +    N 
Sbjct: 620  CQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANL 679

Query: 349  QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
             I VE+++       ++  L+ I  G+  +++GTH L  + I++  L L+IVDE+HRFGV
Sbjct: 680  PIRVEVLSRFKTAKEQKLVLQDIEEGKVDLVVGTHKLLSNDIKFKDLGLLIVDEEHRFGV 739

Query: 409  QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            +Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IKT +   +  
Sbjct: 740  RQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSDD- 798

Query: 469  DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
              V E +   +  G + Y++  Q+E  +      V      L     + + + HG+M + 
Sbjct: 799  AVVREAVLREIMRGGQVYFLHNQVETIE-----KVAADLEKLVPE--ARVTVAHGQMRER 851

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            + E +M+ F +    LL+ TT+IE GIDV  A+ II++ A++ GLAQLHQLRGRVGR   
Sbjct: 852  ELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQLRGRVGRSHH 911

Query: 589  ISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK 643
             +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG  +
Sbjct: 912  QAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSGQIQ 971

Query: 644  FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
             +     L+  +LE A +  K    ++P L  +      + + L
Sbjct: 972  SI--GFTLYMEMLEQAVEALKE--GKEPSLDELLRDQTEVEMRL 1011


>gi|325122057|gb|ADY81580.1| transcription-repair coupling protein [Acinetobacter calcoaceticus
            PHEA-2]
          Length = 1153

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G    V+  +  +      +  T  Q +
Sbjct: 555  WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFGFEVDQSLYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613  AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  + +E+++         K +E +A G+  I++GTH L Q+++Q+  L L++
Sbjct: 673  SFKDRFADWPVRIEVLSRFGSNKTHTKNIEDLAEGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +        + E +   L  G + Y++  +++  +        E    L     + +A
Sbjct: 793  TFVQEHTE-ASIKEAILRELLRGGQVYFLHNEVDTIE-----RAAENIRVLVPE--ARVA 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 965  GEQQSGSMQAIGYS--LYMEMLEKATKAIQQ--GKTPNFDAPLSLTAEINLHI 1013


>gi|332519222|ref|ZP_08395689.1| transcription-repair coupling factor [Lacinutrix algicola 5H-3-7-4]
 gi|332045070|gb|EGI81263.1| transcription-repair coupling factor [Lacinutrix algicola 5H-3-7-4]
          Length = 1120

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 141/459 (30%), Positives = 238/459 (51%), Gaps = 18/459 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++  A  + +A  +  L  +++ +K      N +  +  ++  +  +  T  Q  
Sbjct: 512 WKTLKQKTKARVKHIAFNLIKLYAKRKLEKGYQY--NTDSYLQHELEASFIYEDTPDQIK 569

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  DI  DM  +  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  ILA QH++
Sbjct: 570 ATADIKADMESERPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHHK 629

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +   + V+ +        +R+ +E++  G   IIIGTH L    +++  L L+I
Sbjct: 630 TFSERLKEFPVTVDYLNRFRTAKEKRETIEKLEKGHVDIIIGTHQLVNKKVKFKDLGLLI 689

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S IT  P  R PI+
Sbjct: 690 VDEEQKFGVAVKEKLKTLKDNVDVLTLTATPIPRTLQFSLMAARDLSVITTPPPNRFPIE 749

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + +I  N  + + + +   +  G + ++I  +IE  KE            L     + I 
Sbjct: 750 SNVIRFNE-ETIRDAVSYEIQRGGQIFFIHNRIENIKEVAG-----MLQRLVPD--AKIG 801

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG++     E +M +F NG   +L++TT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 802 IGHGQLDGKKLEELMLAFINGDFDVLVSTTIIESGLDVPNANTIFINNANNFGLSDLHQM 861

Query: 580 RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +   +  ++ ++  R+  L+       GF IA +DL+ R  G++L
Sbjct: 862 RGRVGRSNKKAFCYFITPGYDAMTPDARKRIQALEQFTALGSGFNIAMKDLEIRGAGDLL 921

Query: 635 GIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQD 670
           G +QSG      F   Q  L++++ E+   + K + ++D
Sbjct: 922 GGEQSGFINEIGFDTYQKILNEAIEELKETEFKDLYSED 960


>gi|163802119|ref|ZP_02196015.1| transcription-repair coupling factor [Vibrio sp. AND4]
 gi|159174260|gb|EDP59068.1| transcription-repair coupling factor [Vibrio sp. AND4]
          Length = 1153

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 151/464 (32%), Positives = 234/464 (50%), Gaps = 19/464 (4%)

Query: 229  AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
                 +A ++  +  +++ K   G    ++           PF  T  Q  AI  +L DM
Sbjct: 562  EKVRDVAAELLDVYAKRELK--PGYKFELDRGQYATFKATFPFEETDDQSMAINAVLSDM 619

Query: 289  SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
             Q   M R++ GDVG GKT VA+ A   A +   Q  I+ P  +LAQQH+E  +    N 
Sbjct: 620  CQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAILVPTTLLAQQHFENFRDRFANL 679

Query: 349  QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
             I VE+++       ++  L+ +A G+  I++GTH L    I++  L L+IVDE+HRFGV
Sbjct: 680  PIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSDIKFKDLGLLIVDEEHRFGV 739

Query: 409  QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            +Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IKT +      
Sbjct: 740  RQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLSIKTFVRQCED- 798

Query: 469  DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
              V E +   +  G + Y++  Q+E  +        E    L     + + + HG+M + 
Sbjct: 799  SVVREAVLREIMRGGQVYFLHNQVETIE-----KTAEDLQKLIPE--ARLTVAHGQMRER 851

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            + E +M  F +    +L+ TT+IE GIDV  A+ II++ A++ GLAQLHQLRGRVGR   
Sbjct: 852  ELERIMSDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQLRGRVGRSHH 911

Query: 589  ISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK 643
             +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG   
Sbjct: 912  QAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSGQI- 970

Query: 644  FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
                   L+  +LE A +  K    ++P L  +  +   I + +
Sbjct: 971  -QSVGFTLYMEMLEQAVEALKE--GKEPSLDELLREQTEIEMRI 1011


>gi|323126266|gb|ADX23563.1| Transcription-repair coupling factor [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 1166

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 152/452 (33%), Positives = 236/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A ++  L    +  ++ G   + +  + +    +  F  
Sbjct: 555 KLNDGRFQKTKQKVARQVEDIADELLKLYA--ERSQQKGFSFSPDDDLQRAFDDDFTFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  K   +N  + V++++    +  + + LER+  GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYENFKARFENYPVEVDVLSRFRSKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++           ++   L E 
Sbjct: 793 NRYPVQTYVLE-NNPGLVREAIIREMDRGGQVFYVYNKVDTID--------KKVAELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 993


>gi|262370461|ref|ZP_06063787.1| transcription-repair coupling protein [Acinetobacter johnsonii SH046]
 gi|262314803|gb|EEY95844.1| transcription-repair coupling protein [Acinetobacter johnsonii SH046]
          Length = 1152

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 154/473 (32%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G    ++     +      +  T  Q +
Sbjct: 555  WSKAKRKALEQIHDVAAELLHIQARRQAK--PGFGFELDQGQYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM     M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHYE
Sbjct: 613  AIEATLYDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  I +E+++         K +E +A G+  I+IGTH + Q+S+Q+  L L+I
Sbjct: 673  SFKDRFADWPIRIEVLSRFGSSKSHTKTIEDLAEGKVDIVIGTHKILQESVQFKDLGLMI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +  D V E +   L  G + Y++  ++E  +        E    L     + +A
Sbjct: 793  TFV-QEHTGDSVKEAILRELLRGGQVYFLHNEVETIE-----RAAESLRELVPE--ARVA 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLVPSIKGLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 965  GEQQSGSMQAIGYS--LYMEMLEKATKAIQK--GKTPNFDAPLSLTAEINLHM 1013


>gi|239637489|ref|ZP_04678463.1| transcription-repair coupling factor [Staphylococcus warneri L37603]
 gi|239596934|gb|EEQ79457.1| transcription-repair coupling factor [Staphylococcus warneri L37603]
          Length = 1169

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 157/482 (32%), Positives = 245/482 (50%), Gaps = 20/482 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   KQ +  +G     + +       + P+  T  Q 
Sbjct: 568  EWKKTKAKVQQSVEDIADELIDLY--KQREMSVGYQFGPDTEEQSTFELDFPYELTPDQS 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I  DM ++  M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 626  KSIEEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++I+        ++  E +  G   I++GTH L    I Y  L L+
Sbjct: 686  ETLIERMQDFPVEIQLISRFRSTKEVKETKEGLKSGYVDIVVGTHKLLGKDIHYKDLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 746  IVDEEQRFGVRHKERIKTLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 806  QTYVLEQN-TNFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+Q
Sbjct: 858  AVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +Q G    +     L+  +LE A  + + I  + PD+  V    + + L  Y   E 
Sbjct: 978  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGIKEETPDVPDVE---VELNLDAYLPAEY 1032

Query: 694  FQ 695
             Q
Sbjct: 1033 IQ 1034


>gi|293608212|ref|ZP_06690515.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828785|gb|EFF87147.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 1153

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G    V+  +  +      +  T  Q +
Sbjct: 555  WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFGFEVDQSLYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613  AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  + +E+++         K +E +A G+  I++GTH L Q+++Q+  L L++
Sbjct: 673  SFKDRFADWPVRIEVLSRFGSNKTHTKNIEDLAEGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +        + E +   L  G + Y++  +++  +        E    L     + +A
Sbjct: 793  TFVQEHTE-ASIKEAILRELLRGGQVYFLHNEVDTIE-----RAAENIRVLVPE--ARVA 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 965  GEQQSGSMQAIGYS--LYMEMLEKATKAIQQ--GKTPNFDAPLSLTAEINLHI 1013


>gi|269960991|ref|ZP_06175360.1| transcription-repair coupling factor [Vibrio harveyi 1DA3]
 gi|269834210|gb|EEZ88300.1| transcription-repair coupling factor [Vibrio harveyi 1DA3]
          Length = 1123

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 151/464 (32%), Positives = 234/464 (50%), Gaps = 19/464 (4%)

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
                +A ++  +  +++ K   G    ++           PF  T  Q  AI  +L DM
Sbjct: 532 EKVRDVAAELLDVYAKRELK--PGYKFELDRGQYATFKATFPFEETDDQSMAINAVLSDM 589

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
            Q   M R++ GDVG GKT VA+ A   A +   Q  ++ P  +LAQQH+E  +    N 
Sbjct: 590 CQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVPTTLLAQQHFENFRDRFANL 649

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            I VE+++       ++  L+ +A G+  I++GTH L    I++  L L+IVDE+HRFGV
Sbjct: 650 PIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSDIKFKDLGLLIVDEEHRFGV 709

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           +Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IKT +      
Sbjct: 710 RQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQRED- 768

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
             V E     +  G + Y++  Q+E  +        E    L     + + + HG+M + 
Sbjct: 769 SVVREAALREIMRGGQVYFLHNQVETIE-----KTAEDLQKLIPE--ARVTVAHGQMRER 821

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           + E +M+ F +    LL+ TT+IE GIDV  A+ II++ A++ GLAQLHQLRGRVGR   
Sbjct: 822 ELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQLRGRVGRSHH 881

Query: 589 ISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK 643
            +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG   
Sbjct: 882 QAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSGQI- 940

Query: 644 FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
                  L+  +LE A +  K    ++P L  +  +   I + +
Sbjct: 941 -QSVGFTLYMEMLEQAVEALKE--GKEPSLDDLLREQTEIEMRI 981


>gi|24378538|ref|NP_720493.1| putative transcription-repair coupling factor [Streptococcus mutans
           UA159]
 gi|24376386|gb|AAN57799.1|AE014853_6 putative transcription-repair coupling factor [Streptococcus mutans
           UA159]
          Length = 1162

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 237/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + + K  ++   +  +  
Sbjct: 555 KLNDGRFQRIKQKVSKQVEDIADDLLKLYA--ERSQLKGFAFSPDDKNQEEFDNDFAYVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK++ +DM +   M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TEDQLRSIKEVKKDMEKDQPMDRLLVGDVGFGKTEVAMRAAFKAVNDDKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  +N  + V +++    +  + + L ++A GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYNTFKERFENFPVNVAMMSRFKTKTEQSETLTKLAKGQVDIIIGTHRLLSKDVTFK 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P+
Sbjct: 733 DLGLLVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPS 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + ++I  +++           ++   L E 
Sbjct: 793 NRYPVQTYVMETN-ASVIREAIMREIDRGGQIFYIYNRVDTID--------KKVAELREL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              ++I  +HG+MS+I  E+ +  F +G   LL+ TT+IE GID+ + + + IENA++ G
Sbjct: 844 IPEANIGFVHGKMSEIQLENTLLDFISGEYDLLVTTTIIETGIDISNVNTLFIENADYMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+YHP   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYHPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGSSQSGFID--SVGFEMYSQLLEEA 993


>gi|150388007|ref|YP_001318056.1| transcription-repair coupling factor [Alkaliphilus metalliredigens
            QYMF]
 gi|149947869|gb|ABR46397.1| transcription-repair coupling factor [Alkaliphilus metalliredigens
            QYMF]
          Length = 1174

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 140/447 (31%), Positives = 234/447 (52%), Gaps = 19/447 (4%)

Query: 218  FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
             EW     +     E +A ++  L    + ++  G     +G+  ++     P+  T  Q
Sbjct: 573  VEWVKTKGKVKKAIEDMAEELLKLYA--ERRRNKGHAFGNDGEWQKQFEDLFPYEETPDQ 630

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              +I+++  DM Q+  M R+L GDVG GKT VA+ A   AV    Q   + P  ILAQQH
Sbjct: 631  LKSIEEVKADMEQEGAMDRLLCGDVGYGKTEVAIRAGFKAVMDSKQVAFLVPTTILAQQH 690

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            +   K+      + VE+++     A +++ LE +  G   ++IGTH L    I++  L L
Sbjct: 691  FNNFKQRFSGFPVTVEMLSRFKTPAQQKQVLEGVRTGNVDVLIGTHRLLSKDIEFKDLGL 750

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +IVDE+ RFGV+ + ++ Q   +  VL +TATPIPRTL ++ +G  D+S I + P  R P
Sbjct: 751  LIVDEEQRFGVKHKERMKQMKESIDVLTLTATPIPRTLHMSMVGIRDMSVIEDPPEERFP 810

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-S 516
            ++T +IP N    +I+ +   ++ G + Y++  +++         + +    L E    +
Sbjct: 811  VQTYVIPYNE-SMIIDAITKEMARGGQTYYVYNRVD--------GIHQVARKLQELIPEA 861

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             +A+ HG+M + + E +M  + +G   +L+ TT+IE G+D+ + + I+I +A+  GL+QL
Sbjct: 862  RVAVGHGQMGERELEMLMMDYLDGVYDVLVCTTIIETGLDISNVNTIMIHDADKLGLSQL 921

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
            +QLRGRVGR  +     L+Y     LS+ +  RL  +K       GF IA  DL+ R  G
Sbjct: 922  YQLRGRVGRSSQQGYAYLMYQRDKILSEVAEKRLKAIKEFTEFGSGFKIAMRDLEIRGAG 981

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEI 658
             +LG +Q G    +     L+  LLE 
Sbjct: 982  NLLGSQQHGHMASIGYD--LYIKLLEE 1006


>gi|255065241|ref|ZP_05317096.1| transcription-repair coupling factor [Neisseria sicca ATCC 29256]
 gi|255050662|gb|EET46126.1| transcription-repair coupling factor [Neisseria sicca ATCC 29256]
          Length = 1158

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 151/449 (33%), Positives = 235/449 (52%), Gaps = 15/449 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 581  LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIVAVIKDLTQAKPMDRLVCG 640

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 641  DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNN 700

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 701  SKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 760

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 761  VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 819

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  +++  +     ++ ER  +L     + I + H ++ + + E VM  F   
Sbjct: 820  RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHRQLRERELEQVMRDFLQQ 872

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
               +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 873  RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 932

Query: 601  SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 933  TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMMQVGFTLYTEMLK 990

Query: 658  IARKDAKHILTQDPDLTSVRGQSIRILLY 686
             A +D K    + PDL +  G +  I L+
Sbjct: 991  QAVRDLKK--GRQPDLDAPLGITTEIKLH 1017


>gi|171320492|ref|ZP_02909522.1| transcription-repair coupling factor [Burkholderia ambifaria MEX-5]
 gi|171094277|gb|EDT39354.1| transcription-repair coupling factor [Burkholderia ambifaria MEX-5]
          Length = 1156

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 233/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++     ++    +  K   +  F  T  Q 
Sbjct: 553  QWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYV--KFAESFGFEETPDQA 610

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 611  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 670

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 671  QTFVDRFADWPVRIVELSRFKTTKEVNAAIAQINEGTVDIVIGTHKLLSSDVQFKRLGLV 730

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 731  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 790

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +      +L     + I
Sbjct: 791  KTFV-RREEESVMREAMLRELKRGGQVYFLHNEVETIE-----NRRAMLEALVPE--ARI 842

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 843  VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 902

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 903  LRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 962

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 963  LGDKQSGEIHEIGFQ--LYTDMLNDAVKALKN--GKEPDLTAPLAATTEINLH 1011


>gi|300703955|ref|YP_003745557.1| transcription-repair ATP-dependent coupling factor, helicase
            [Ralstonia solanacearum CFBP2957]
 gi|299071618|emb|CBJ42942.1| transcription-repair ATP-dependent coupling factor, helicase
            [Ralstonia solanacearum CFBP2957]
          Length = 1147

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 156/472 (33%), Positives = 232/472 (49%), Gaps = 19/472 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++    P+       +    +  F  T  Q 
Sbjct: 554  QWEKAKRRAAQQIRDTAAELLNLYARRALRQGFAFPLTPND--YEAFAESFGFDETPDQA 611

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QHY
Sbjct: 612  AAITAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHY 671

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +     +  + +  I+    +     A+E I  G   I+IGTH L    +Q+ +L LV
Sbjct: 672  QTLADRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVQFDRLGLV 731

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 732  IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 791

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +   +  +L     + +
Sbjct: 792  KTFV-RREEDSVLREAILRELKRGGQVYFLHNEVETIE-----NKRAKLEALVPE--ARV 843

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQ
Sbjct: 844  AVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQ 903

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H    L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 904  LRGRVGRSHHQAYAYLLVHDAEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV 963

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG KQSG    +  Q  L+  +L  A K  K    ++PDL +    +  I L
Sbjct: 964  LGDKQSGEISEIGFQ--LYTDMLNQAVKSLKA--GKEPDLMAPLAATTEINL 1011


>gi|207743032|ref|YP_002259424.1| transcription-repair coupling factor protein [Ralstonia solanacearum
            IPO1609]
 gi|206594429|emb|CAQ61356.1| transcription-repair coupling factor protein [Ralstonia solanacearum
            IPO1609]
          Length = 1147

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 156/472 (33%), Positives = 231/472 (48%), Gaps = 19/472 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++    P+       +    +  F  T  Q 
Sbjct: 554  QWEKAKRRAAQQIRDTAAELLNLYARRALRQGFAFPLTPND--YEAFAESFGFDETPDQA 611

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QHY
Sbjct: 612  AAITAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHY 671

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +     +  + +  I+    +     A+E I  G   I+IGTH L    +Q+ +L LV
Sbjct: 672  QTLADRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVQFDRLGLV 731

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 732  IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 791

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +   +   L     + +
Sbjct: 792  KTFV-RREEDSVLREAILRELKRGGQVYFLHNEVETIE-----NKRAKLEELVPE--ARV 843

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQ
Sbjct: 844  AVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQ 903

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H    L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 904  LRGRVGRSHHQAYAYLLVHDAEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV 963

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG KQSG    +  Q  L+  +L  A K  K    ++PDL +    +  I L
Sbjct: 964  LGDKQSGEISEIGFQ--LYTDMLNHAVKSLKA--GKEPDLMAPLAATTEINL 1011


>gi|50084573|ref|YP_046083.1| transcription-repair coupling protein [Acinetobacter sp. ADP1]
 gi|49530549|emb|CAG68261.1| transcription-repair coupling protein [Acinetobacter sp. ADP1]
          Length = 1171

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G    ++     +      +  T  Q +
Sbjct: 571  WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFAFELDQSPYMQFSSGFAYEETLDQAN 628

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM     M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHYE
Sbjct: 629  AIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLLAQQHYE 688

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  I +E+++        +K +E +  G+  I++GTH L Q+++Q++ L L+I
Sbjct: 689  SFKDRFADWPIRIEVLSRFGSNKTHQKNIEDLQTGKVDIVVGTHKLLQETVQFHDLGLMI 748

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 749  VDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 808

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +  D V E +   L  G + Y++  +++  +        E   +L     + +A
Sbjct: 809  TFV-QEHTDDSVREAILRELLRGGQVYFLHNEVDSIE-----RTAENIRNLVPE--ARVA 860

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ II+E A+  GLAQLHQL
Sbjct: 861  VAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIMERADKLGLAQLHQL 920

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 921  RGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 980

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 981  GEQQSGSMQAIGYS--LYMEMLEKATKAIQK--GKTPNFDAPLSLTAEINLHM 1029


>gi|116493280|ref|YP_805015.1| transcription-repair coupling factor [Pediococcus pentosaceus ATCC
            25745]
 gi|116103430|gb|ABJ68573.1| transcription-repair coupling factor [Pediococcus pentosaceus ATCC
            25745]
          Length = 1165

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 135/446 (30%), Positives = 235/446 (52%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    +   +  E +A  +  L  +++ +   G     +    ++   + P++ T  Q 
Sbjct: 567  DWAKTKKNVASKIEDIADDLIELYAKREAE--KGFAFKPDDSYQRQFDNDFPYTETPDQL 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM ++  M R+L GDVG GKT VAL A   AVE+G Q  I+ P  ILAQQH+
Sbjct: 625  RSIEEIKKDMERERPMDRLLVGDVGYGKTEVALRAAFKAVESGKQVAILVPTTILAQQHF 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + + +  +   I   I++     A  ++ LE +  G   +I+GTH L    +++  L L+
Sbjct: 685  DTMNERFEGYPIATGILSRFQTGAQVKETLEGLKDGSVDVIVGTHRLLSKDVEFKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + ++ +  +   VL +TATPIPRTL ++ +G  D+S I   P  R PI
Sbjct: 745  VIDEEQRFGVKHKERIKELKSQVDVLTLTATPIPRTLNMSMIGVRDLSVIETPPTNRYPI 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E +   +    + +++  ++++ +      VV    +L     + +
Sbjct: 805  QTYVMEEN-AGAIREGIMREMRRNGQVFYLHNRVQDIE-----KVVAEIEALVPE--ARV 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              IHG+M++   E ++  F  G   +L+ TT+IE GID+ +A+ + +ENA+H GL+QL+Q
Sbjct: 857  GYIHGQMTEKQLEDILFEFIAGEYDVLVTTTIIETGIDIPNANTLFVENADHMGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++    LY     L++    RL  +K+      GF IA  DL  R  G +
Sbjct: 917  LRGRIGRSSRVAYAYFLYQKNRVLTELGEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G    +     L+  +L  A
Sbjct: 977  LGKQQHGFIDSVGYD--LYSQMLADA 1000


>gi|311104675|ref|YP_003977528.1| transcription-repair coupling factor [Achromobacter xylosoxidans A8]
 gi|310759364|gb|ADP14813.1| transcription-repair coupling factor [Achromobacter xylosoxidans A8]
          Length = 1154

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 146/473 (30%), Positives = 228/473 (48%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  ++  ++      N+     Q       F  T  Q 
Sbjct: 561  QWDKARRKAARQVRDTAAELLALYAQRAAREG--YAFNLPLNDYQAFAEGFGFEETVDQA 618

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH 
Sbjct: 619  AAIEAVIADMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVANGKQVALLCPTTLLAEQHA 678

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + V  ++          A+E I  G+  I+IGTH +    +++ +L LV
Sbjct: 679  QTFSDRFADWPVKVVELSRFRSAKEVSAAVEGINDGRVDIVIGTHKILSKDVKFKRLGLV 738

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I   P  R  I
Sbjct: 739  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAI 798

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +   +    + E L   L  G + Y++  ++E        +   R   L     + I
Sbjct: 799  KTFVRREDG-STLREALLRELKRGGQCYFLHNEVETIH-----NRRARLEELVPE--ARI 850

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQ
Sbjct: 851  AVAHGQMPERELEQVMKGFYQQRYNVLLCTTIIETGIDVPSANTIVIHRADRFGLAQLHQ 910

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTR---LSVLKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL      ++ N+  R   +  ++    GF +A  DL+ R  GE+
Sbjct: 911  LRGRVGRSHHQAYAYLLTPGEDAITNNAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEV 970

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG  QSG          +++ +L  A +  +    ++PDL +    +  + L+
Sbjct: 971  LGDSQSG--NIQEVGFSMYNEMLNEAVRALRA--GEEPDLDAPFNLACEVNLH 1019


>gi|283783133|ref|YP_003373887.1| transcription-repair coupling factor [Gardnerella vaginalis 409-05]
 gi|283441749|gb|ADB14215.1| transcription-repair coupling factor [Gardnerella vaginalis 409-05]
          Length = 1202

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 134/453 (29%), Positives = 227/453 (50%), Gaps = 19/453 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W     +   +   +A  +  L   R+Q +       + +    +++    P+  T  Q
Sbjct: 607  DWAQTKAKAKKHVHEIAENLIKLYSARQQSRG---FAFSKDTPWQKELEDAFPYQETADQ 663

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM     M R++ GDVG GKT +AL A   AV+   Q V++ P  +L QQH
Sbjct: 664  LTTIDEVKADMENPIPMDRLICGDVGFGKTEIALRAAFKAVQDSKQVVVLVPTTLLVQQH 723

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE      +   + V  ++         + L  +  G   ++IGTH L   SI++  L L
Sbjct: 724  YETFTNRFEGFPVKVAAMSRFQTSKEIEETLAGLQDGSIDVVIGTHKLLNPSIKFKDLGL 783

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 784  VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 843

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T +   +   +V   +K  L  G + +++  ++E+      +        L       
Sbjct: 844  VLTYVGAYDN-SQVAACIKRELLRGGQVFYVHNRVEDISSVASK-----IQELVPDV--R 895

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +AI HG+M +   ++V+  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH
Sbjct: 896  VAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 955

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY P  P+++ S+ RLS +        GF +A +DL+ R  G 
Sbjct: 956  QLRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQHTALGSGFDVAMKDLELRGTGN 1015

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            +LG +QSG  +      +L+  ++  A +  K 
Sbjct: 1016 LLGDEQSGHIE--GVGFDLYVRMVSEAVEKYKE 1046


>gi|146296229|ref|YP_001180000.1| transcription-repair coupling factor [Caldicellulosiruptor
            saccharolyticus DSM 8903]
 gi|145409805|gb|ABP66809.1| transcription-repair coupling factor [Caldicellulosiruptor
            saccharolyticus DSM 8903]
          Length = 1143

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 148/475 (31%), Positives = 249/475 (52%), Gaps = 19/475 (4%)

Query: 218  FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
             EW    ++     E++A  I  L  ++Q K   G   + +    ++     P++ T+ Q
Sbjct: 553  LEWQKQKQKVRKSLEVVAKDIVELYAKRQLK--KGFKFSPDTIWQKEFEEKFPYTETEGQ 610

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              AI++I +DM  +  M RIL GDVG GKT VA+ A   AV    Q  ++ P  ILAQQH
Sbjct: 611  LQAIEEIKKDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQH 670

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y    +  ++  I +E+++    ++ ++K L+ +  G   IIIGTH L  + +++  L L
Sbjct: 671  YMTFVQRMKDFPITIEVLSRLKSESQQKKILKALKDGTIDIIIGTHRLLSNDVKFKDLGL 730

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +I+DE+H+FGV+ + K+ +      VL +TATPIPRTL +  LG  D+S I + P  R P
Sbjct: 731  LIIDEEHKFGVEHKEKIKKLKENVDVLTLTATPIPRTLNMALLGIRDLSIIEDPPEDRFP 790

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            ++T ++  N    + E +   +S G + +++  ++++ +E     VV R  +L       
Sbjct: 791  VQTFVMEYNE-KVIKEAILKEVSRGGQVFYLYNRVKDIEE-----VVNRLQALLGE-DIK 843

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IA  HG+M +   E V+  F NG   +L+ TT+IE G+D+ + + +I+E+A+  GLAQL+
Sbjct: 844  IAYAHGQMDERQLEEVLIDFINGKYDVLVCTTIIESGVDMPNVNTLIVEDADRLGLAQLY 903

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR  +++     +     LS+ +  RLS +K       GF IA  DL+ R  G 
Sbjct: 904  QLRGRVGRSNKLAYAYFTFRKDKVLSEEAAKRLSAIKEFTELGSGFKIAMRDLEIRGAGS 963

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            I+G  Q G           +D  + +  ++ + +  ++          IR+  Y+
Sbjct: 964  IVGKLQHGHI-----NAVGYDMYIRLLSEEIRRLKGEEIQPEIEPQIDIRVNAYI 1013


>gi|317126795|ref|YP_004093077.1| transcription-repair coupling factor [Bacillus cellulosilyticus DSM
            2522]
 gi|315471743|gb|ADU28346.1| transcription-repair coupling factor [Bacillus cellulosilyticus DSM
            2522]
          Length = 1185

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 139/437 (31%), Positives = 235/437 (53%), Gaps = 19/437 (4%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            + +  + +   G   + +G   ++   + P+  T+ Q  AI++I +DM  +  M R+L G
Sbjct: 592  IKLYAEREASKGFAFSKDGPEQREFESSFPYQETEDQIRAIEEIKKDMELERPMDRLLCG 651

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   A+  G Q   + P  ILAQQHYE I++  Q+  +   I+     
Sbjct: 652  DVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHYETIRERFQDFAVNTSILNRFRS 711

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            +  +++ ++ +  G   I++GTH L    I +  L L+IVDE+ RFGV  + K+ +    
Sbjct: 712  RKEQQETMKGLNKGTVDIVVGTHRLLSKDITFENLGLLIVDEEQRFGVTHKEKIKKLKAN 771

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVV 478
              VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N   + E IE     
Sbjct: 772  VDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNEGLVKEAIE---RE 828

Query: 479  LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            L+ G + +++  ++++ +  N     ++ + L     +++  +HGRM++ + ESVM  F 
Sbjct: 829  LARGGQVFYLYNRVDDIEVVN-----DKISMLVPE--ANVRFVHGRMTESELESVMLEFL 881

Query: 539  NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +G   +L+ TT+IE G+D+ + + +II+NA+  GL+QL+QLRGRVGR   ++     +  
Sbjct: 882  DGNVDVLVTTTIIETGVDIPNVNTLIIDNADKMGLSQLYQLRGRVGRSNRVAYAYFTHQR 941

Query: 599  P--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
               L++ +  RL  +K       GF IA  DL  R  G +LG +Q G         +L+ 
Sbjct: 942  DKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI--ASVGFDLYS 999

Query: 654  SLLEIARKDAKHILTQD 670
             +L+ A  + K  ++ D
Sbjct: 1000 QMLKDAIDERKDNMSTD 1016


>gi|290579532|ref|YP_003483924.1| putative transcription-repair coupling factor [Streptococcus mutans
           NN2025]
 gi|254996431|dbj|BAH87032.1| putative transcription-repair coupling factor [Streptococcus mutans
           NN2025]
          Length = 1162

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 237/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L   +      G   + + K  ++   +  +  
Sbjct: 555 KLNDGRFQRVKQKVSKQVEDIADDLLKLYAERSR--LKGFAFSPDDKNQEEFDNDFAYVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK++ +DM +   M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TEDQLRSIKEVKKDMEKDQPMDRLLVGDVGFGKTEVAMRAAFKAVNDDKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  +N  + V +++    +  + + L ++A GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYNTFKERFENFPVNVAMMSRFKTKTEQSETLTKLAKGQVDIIIGTHRLLSKDVTFK 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P+
Sbjct: 733 ELGLLVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPS 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + ++I  +++           ++   L E 
Sbjct: 793 NRYPVQTYVMETN-ASVIREAIMREIDRGGQIFYIYNRVDTID--------KKVAELREL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              ++I  +HG+MS+I  E+ +  F +G   LL+ TT+IE GID+ + + + IENA++ G
Sbjct: 844 IPEANIGFVHGKMSEIQLENTLLDFISGEYDLLVTTTIIETGIDISNVNTLFIENADYMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+YHP   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYHPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGSSQSGFID--SVGFEMYSQLLEEA 993


>gi|289433569|ref|YP_003463441.1| transcription-repair coupling factor [Listeria seeligeri serovar 1/2b
            str. SLCC3954]
 gi|289169813|emb|CBH26351.1| transcription-repair coupling factor [Listeria seeligeri serovar 1/2b
            str. SLCC3954]
          Length = 1178

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 143/452 (31%), Positives = 238/452 (52%), Gaps = 19/452 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T  Q 
Sbjct: 573  EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSPDEEMQREFEDAFPYQETDDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631  RSIAEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K+  Q   I + +++    +  + + L+ +  G   I++GTH L    ++Y+ L L+
Sbjct: 691  ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKSGTVDIVVGTHRLLSKDVEYHDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751  IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T +   N +  V E ++  L+   + Y++  ++E           ++ + +      + 
Sbjct: 811  QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVETI--------TQKADEISAMVPDAR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +AI HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+
Sbjct: 862  VAIAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+    +Y     L + +  RLS +K       GF IA  DL  R  G 
Sbjct: 922  QLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ILG +Q G    +     L+  +L+ A +  K
Sbjct: 982  ILGAQQHGFIDSVGFD--LYSQMLKEAIEAKK 1011


>gi|298253895|ref|ZP_06977482.1| transcription-repair coupling factor [Gardnerella vaginalis 5-1]
 gi|297532038|gb|EFH71013.1| transcription-repair coupling factor [Gardnerella vaginalis 5-1]
          Length = 1202

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 134/453 (29%), Positives = 227/453 (50%), Gaps = 19/453 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W     +   +   +A  +  L   R+Q +       + +    +++    P+  T  Q
Sbjct: 607  DWAQTKAKAKKHVHEIAENLIKLYSARQQSRG---FAFSKDTPWQKELEDAFPYQETADQ 663

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM     M R++ GDVG GKT +AL A   AV+   Q V++ P  +L QQH
Sbjct: 664  LTTIDEVKADMENPIPMDRLICGDVGFGKTEIALRAAFKAVQDSKQVVVLVPTTLLVQQH 723

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE      +   + V  ++         + L  +  G   ++IGTH L   SI++  L L
Sbjct: 724  YETFTNRFEGFPVKVAAMSRFQTSKEIEETLAGLQDGSIDVVIGTHKLLNPSIKFKDLGL 783

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 784  VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 843

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T +   +   +V   +K  L  G + +++  ++E+      +        L       
Sbjct: 844  VLTYVGAYDN-SQVAACIKRELLRGGQVFYVHNRVEDISSVASK-----IQELVPDV--R 895

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +AI HG+M +   ++V+  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH
Sbjct: 896  VAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 955

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY P  P+++ S+ RLS +        GF +A +DL+ R  G 
Sbjct: 956  QLRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQHTALGSGFDVAMKDLELRGTGN 1015

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            +LG +QSG  +      +L+  ++  A +  K 
Sbjct: 1016 LLGDEQSGHIE--GVGFDLYVRMVSEAVEKYKE 1046


>gi|207724177|ref|YP_002254575.1| transcription-repair coupling factor protein [Ralstonia solanacearum
            MolK2]
 gi|206589387|emb|CAQ36349.1| transcription-repair coupling factor protein [Ralstonia solanacearum
            MolK2]
          Length = 1147

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 156/472 (33%), Positives = 231/472 (48%), Gaps = 19/472 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++    P+       +    +  F  T  Q 
Sbjct: 554  QWEKAKRRAAQQIRDTAAELLNLYARRALRQGFAFPLTPND--YEAFAESFGFDETPDQA 611

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QHY
Sbjct: 612  AAITAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHY 671

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +     +  + +  I+    +     A+E I  G   I+IGTH L    +Q+ +L LV
Sbjct: 672  QTLADRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVQFDRLGLV 731

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 732  IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 791

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +   +   L     + +
Sbjct: 792  KTFV-RREEDSVLREAILRELKRGGQVYFLHNEVETIE-----NKRAKLEELVPE--ARV 843

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQ
Sbjct: 844  AVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQ 903

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H    L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 904  LRGRVGRSHHQAYAYLLVHDAEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV 963

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG KQSG    +  Q  L+  +L  A K  K    ++PDL +    +  I L
Sbjct: 964  LGDKQSGEISEIGFQ--LYTDMLNHAVKSLKA--GKEPDLMAPLAATTEINL 1011


>gi|254977126|ref|ZP_05273598.1| transcription-repair coupling factor [Clostridium difficile
            QCD-66c26]
 gi|255094455|ref|ZP_05323933.1| transcription-repair coupling factor [Clostridium difficile CIP
            107932]
 gi|255316206|ref|ZP_05357789.1| transcription-repair coupling factor [Clostridium difficile
            QCD-76w55]
 gi|255518868|ref|ZP_05386544.1| transcription-repair coupling factor [Clostridium difficile
            QCD-97b34]
 gi|255652047|ref|ZP_05398949.1| transcription-repair coupling factor [Clostridium difficile
            QCD-37x79]
 gi|260685021|ref|YP_003216306.1| transcription-repair coupling factor [Clostridium difficile CD196]
 gi|260688679|ref|YP_003219813.1| transcription-repair coupling factor [Clostridium difficile R20291]
 gi|260211184|emb|CBA66656.1| transcription-repair coupling factor [Clostridium difficile CD196]
 gi|260214696|emb|CBE07346.1| transcription-repair coupling factor [Clostridium difficile R20291]
          Length = 1128

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 139/451 (30%), Positives = 226/451 (50%), Gaps = 17/451 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT    +     E +   +  L  +++  K  G   + +     +     P+  T+ Q 
Sbjct: 564  EWTKAKAKVKKEIEDMTKDLIELYAKRE--KIQGYKFSKDTPWQAEFESLFPYQETEDQL 621

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI++  +DM     M R++ GDVG GKT VA+ ++  A     Q  ++ P  ILAQQHY
Sbjct: 622  KAIEETKKDMESSKVMDRLVCGDVGYGKTEVAIRSIFKACMDQKQVAVLVPTTILAQQHY 681

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+  +N  + VE+++       +++ +E    G   I+IGTH +    I    L LV
Sbjct: 682  NTFKERFENYPLRVEVLSRFKTPKQQKQIIEDAKKGLVDILIGTHRIISKDINLPNLGLV 741

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ +  L +  +   VL ++ATPIPRTL ++  G  D+S I E P  R P+
Sbjct: 742  VIDEEQRFGVKHKEALKKIKSTVDVLTLSATPIPRTLHMSLSGIRDMSVIEEPPQERHPV 801

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   ++   + + ++  LS G + +++  ++E  +E            L     + +
Sbjct: 802  ITYV-TESKESVIQDEIERELSRGGQVFFVYNRVEHIEEMAS-----MIQKLVPD--ARV 853

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HGRM+    E+++  F N    +L+ TT+IE G+D+ +A+ +II +A+  GLAQL+Q
Sbjct: 854  AVAHGRMTSKSLENIILGFLNKDYDVLVCTTIIETGMDISNANTMIIYDADKMGLAQLYQ 913

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR        LLY     LS+ +  RL  ++       GF IA  DL+ R  G I
Sbjct: 914  LRGRVGRSSRQGYAYLLYEKDKTLSEIAEKRLKAIREFTEFGSGFKIAMRDLEIRGAGNI 973

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            LG +Q G    +     L+  +L  A K  K
Sbjct: 974  LGSQQHGHMAVIGYD--LYVKMLNDAIKKVK 1002


>gi|126701125|ref|YP_001090022.1| transcription-repair coupling factor [Clostridium difficile 630]
 gi|255102711|ref|ZP_05331688.1| transcription-repair coupling factor [Clostridium difficile
            QCD-63q42]
 gi|255308532|ref|ZP_05352703.1| transcription-repair coupling factor [Clostridium difficile ATCC
            43255]
 gi|115252562|emb|CAJ70405.1| Transcription-repair coupling factor (TRCF ATP-dependent helicase
            mfd) [Clostridium difficile]
          Length = 1128

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 139/451 (30%), Positives = 226/451 (50%), Gaps = 17/451 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT    +     E +   +  L  +++  K  G   + +     +     P+  T+ Q 
Sbjct: 564  EWTKAKAKVKKEIEDMTKDLIELYAKRE--KIQGYKFSKDTPWQAEFESLFPYQETEDQL 621

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI++  +DM     M R++ GDVG GKT VA+ ++  A     Q  ++ P  ILAQQHY
Sbjct: 622  KAIEETKKDMESSKVMDRLVCGDVGYGKTEVAIRSIFKACMDQKQVAVLVPTTILAQQHY 681

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+  +N  + VE+++       +++ +E    G   I+IGTH +    I    L LV
Sbjct: 682  NTFKERFENYPLRVEVLSRFKTPKQQKQIIEDAKKGLVDILIGTHRIISKDINLPNLGLV 741

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ +  L +  +   VL ++ATPIPRTL ++  G  D+S I E P  R P+
Sbjct: 742  VIDEEQRFGVKHKEALKKIKSTVDVLTLSATPIPRTLHMSLSGIRDMSVIEEPPQERHPV 801

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   ++   + + ++  LS G + +++  ++E  +E            L     + +
Sbjct: 802  ITYV-TESKESVIQDEIERELSRGGQVFFVYNRVEHIEEMAS-----MIQKLVPD--ARV 853

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HGRM+    E+++  F N    +L+ TT+IE G+D+ +A+ +II +A+  GLAQL+Q
Sbjct: 854  AVAHGRMTSKSLENIILGFLNKDYDVLVCTTIIETGMDISNANTMIIYDADKMGLAQLYQ 913

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR        LLY     LS+ +  RL  ++       GF IA  DL+ R  G I
Sbjct: 914  LRGRVGRSSRQGYAYLLYEKDKTLSEIAEKRLKAIREFTEFGSGFKIAMRDLEIRGAGNI 973

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            LG +Q G    +     L+  +L  A K  K
Sbjct: 974  LGSQQHGHMAVIGYD--LYVKMLNDAIKKVK 1002


>gi|315083489|gb|EFT55465.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL027PA2]
          Length = 590

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 184/573 (32%), Positives = 295/573 (51%), Gaps = 38/573 (6%)

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK+   +              +  V    +  +Y   + L       +    L   P L 
Sbjct: 6   GKVVAGR--------EEGKVMAAQVQRHGLLGLYQQTSKLRTWEIASVESMLLESTPELE 57

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           + + + L Q+   PS+ EA++ IH P    + +  +   ERL ++E +A Q+ + + R+ 
Sbjct: 58  DTLPEWLRQEADLPSLWEAYHAIHYPHSVAEADRGA---ERLIWEEAIATQVTMAVRRRS 114

Query: 247 FKKEIGIPINV-EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            ++      +  +G +       +PF+PT  Q+   + I  D+S    M R+LQG+VGSG
Sbjct: 115 AERHDAPVCSRRDGGLLAAFEDRLPFTPTVGQDEVSRVIDADLSADRPMHRLLQGEVGSG 174

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-----------IIVEI 354
           KT VAL AM   V+AG QAV++AP  +LAQQHY  I     +               V +
Sbjct: 175 KTFVALRAMLQVVDAGHQAVLLAPTEVLAQQHYRTIINMLGDLASGGGLDAPEISTGVAL 234

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           +TG+M  A  R AL  IA G A II+GTH+L    + Y  + LV+VDEQHRFGV+QR  L
Sbjct: 235 LTGSMKAAGTRAALADIASGAAGIIVGTHSLLSGRVIYNDIGLVVVDEQHRFGVEQRSVL 294

Query: 415 TQ-KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRID 469
           T  +   PH L++TATPIPRT+ +T  GD+++S + E P GR  ++T ++ +    + + 
Sbjct: 295 TTGEGARPHELVLTATPIPRTVAMTVFGDLEVSSLRELPTGRADVQTTVVDLPAHGSWLT 354

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTS------SIAI 520
              +R++     G + + +CP+I      +    R        L     +       +  
Sbjct: 355 RAWQRIREECDAGHQVFVVCPRINSDDADDVEGGRRPAAAVEELAPQLATGPLAGLRVEA 414

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +H R+   +K+ VMD F  G  ++LI+TTVIEVG+DV +A++++I +A+ FG++QLHQLR
Sbjct: 415 LHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGVSQLHQLR 474

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GR+GRG     C+L+   P    +  RL  +  + DGF +AE DL QR EG +LG  Q+G
Sbjct: 475 GRIGRGNLPGLCLLVTTAPPGSVARERLDAVAASRDGFELAELDLAQRHEGNVLGSSQAG 534

Query: 641 MPK-FLIAQPELHDSLLEIARKDAKHILTQDPD 672
                 + +   H  ++  ++  A+  + + PD
Sbjct: 535 YSSPLRLLRVLDHAEIVTASKDLAERWVAEAPD 567


>gi|257138824|ref|ZP_05587086.1| transcription-repair coupling factor [Burkholderia thailandensis
           E264]
          Length = 898

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 232/473 (49%), Gaps = 19/473 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R         A ++  L  R+  ++     ++    +  K   +  F  T  Q 
Sbjct: 293 QWERAKRRAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYV--KFADSFGFEETPDQA 350

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 351 AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 410

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +       +  + +  ++          A+++I  G   I+IGTH L    +Q+ +L LV
Sbjct: 411 QTFIDRFADWPVKIVELSRFKSTKEVNAAIQQINDGSVDIVIGTHKLLSSDVQFKRLGLV 470

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 471 IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 530

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 531 KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRRAMLEELVPE--ARI 582

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 583 VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 642

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
           LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 643 LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 702

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
           LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 703 LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 751


>gi|319654942|ref|ZP_08009016.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2]
 gi|317393367|gb|EFV74131.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2]
          Length = 1179

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 144/475 (30%), Positives = 248/475 (52%), Gaps = 23/475 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++  +  + +A  +  L   ++     G   + +G + ++     P+  T+ Q 
Sbjct: 571  DWKRVKKKVQSSVQDIADDLIKLYAEREA--SKGYAFSPDGDMQREFEAAFPYQETEDQI 628

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  I+ P  ILAQQHY
Sbjct: 629  RSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVAILVPTTILAQQHY 688

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +++  Q+  I + +++    +  + + L+ +  G   +++GTH +    IQY +L L+
Sbjct: 689  ETMRERFQDYPIEIGLLSRFRSKKQQTETLKGLKAGTIDVVVGTHRILSKDIQYRELGLL 748

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 749  IIDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 808

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  L+   + Y++  ++E+ +        E  + L     + +
Sbjct: 809  QTYVMEYNG-ALVREAIERELARDGQVYFLYNRVEDIE-----RKAEEISMLVPD--ARV 860

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 861  TYAHGKMTENELESVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVHDADKMGLSQLYQ 920

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 921  LRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 980

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLY 688
            LG +Q G    +     L+  +L+ A ++ K        L  V  +  +I + L 
Sbjct: 981  LGAEQHGFIDSVGFD--LYSQMLKEAIEERKD------KLDGVEAKPAKIEIDLD 1027


>gi|224475645|ref|YP_002633251.1| putative transcription-repair coupling factor [Staphylococcus
            carnosus subsp. carnosus TM300]
 gi|222420252|emb|CAL27066.1| putative transcription-repair coupling factor [Staphylococcus
            carnosus subsp. carnosus TM300]
          Length = 1172

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 147/456 (32%), Positives = 238/456 (52%), Gaps = 17/456 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   ++ +   G     + +   +   + P+  T  Q 
Sbjct: 569  EWKKTKAKVQQSVEDIADELIELY--REREMAQGYQYGADSEQQHEFEMDFPYDLTADQS 626

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM ++  M R+L GDVG GKT VAL A   AV  G Q   + P  ILAQQHY
Sbjct: 627  KSIVEIKDDMEKERPMDRLLCGDVGYGKTEVALRAAFKAVMEGKQVAFLVPTTILAQQHY 686

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +E+++        ++  + +  G   I++GTH L    ++Y  L L+
Sbjct: 687  ETLIERMQDFPVNIELMSRFRTPKEVKETKKGLEDGTVDIVVGTHKLLAKDVKYKDLGLL 746

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ + ++    T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 747  VVDEEQRFGVRHKERIKSLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 806

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS G +A+++  +++   E       E+   L     ++I
Sbjct: 807  QTYVLEQNS-NFIKEALERELSRGGQAFYLYNKVQSIYEKK-----EQLQMLMPE--ANI 858

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HGRM++ + E  M  F +G   +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 859  GVAHGRMTERELEDTMIGFVDGEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 918

Query: 579  LRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   +     L   +  LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 919  LRGRVGRSSRVGYAYFLHPTNKVLSETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNL 978

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            LG +Q G    +     L+  +LE A  + + I  +
Sbjct: 979  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGIKEE 1012


>gi|294496926|ref|YP_003560626.1| transcription-repair coupling factor [Bacillus megaterium QM B1551]
 gi|294346863|gb|ADE67192.1| transcription-repair coupling factor [Bacillus megaterium QM B1551]
          Length = 1176

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 241/449 (53%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+  +  + +A  +  L   ++     G   + +G + ++     P+  T+ Q 
Sbjct: 572  DWKKVKRKVESSVQDIADDLIKLYAEREA--SKGYAFSPDGDLQREFETAFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             ++++I +DM  +  M R+L GDVG GKT VA+ A   AV  G Q  I+ P  ILAQQHY
Sbjct: 630  RSVQEIKKDMEHERPMDRLLCGDVGYGKTEVAIRAAFKAVTDGKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  +++ ++ + +G   ++IGTH L    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRSRKQQQETIKGLKNGTVDVVIGTHRLLSKDVIYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  VIDEEQRFGVTHKEKIKQMKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  V E ++  L+   + Y++  ++E+ +        E  + L     + +
Sbjct: 810  QTYVVEYNPV-LVREAIERELARDGQVYFLYNRVEDIE-----RKAEEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + E+V+ SF  G   ++++TT+IE G+D+ + + +I+ NA+  GL+QL+Q
Sbjct: 862  TYAHGKMNETELEAVILSFLEGEYDVIVSTTIIETGVDIPNVNTLIVNNADKMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     YH    L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFTYHKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +Q G    +     L+  +L+ A ++
Sbjct: 982  LGAQQHGFIDSVGFD--LYSQMLKEAIEE 1008


>gi|284048953|ref|YP_003399292.1| transcription-repair coupling factor [Acidaminococcus fermentans
           DSM 20731]
 gi|283953174|gb|ADB47977.1| transcription-repair coupling factor [Acidaminococcus fermentans
           DSM 20731]
          Length = 1092

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 151/455 (33%), Positives = 238/455 (52%), Gaps = 22/455 (4%)

Query: 212 PRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
           P K  +    +W    R+      +LA ++  L +  Q K   G     +    ++   +
Sbjct: 490 PPKLSNMGRKDWQKATRKAQKAITILATEL--LRLYAQRKITPGHAFAPDTHWQKEFEDS 547

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            PF  T  Q  AI +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q  ++A
Sbjct: 548 FPFEETPDQLKAIAEIKADMEKPVPMERLLCGDVGYGKTEVAIRAAFKAVMDGKQVAVLA 607

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQH     +   +  + VE+++       +R+ +ER+A G+  ++IGTH +   
Sbjct: 608 PTTVLAQQHLLTFTQRMGSFGVRVEMLSRFRTPKQQREIMERVAEGKIDVLIGTHRILNP 667

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++++ L L+I+DE+ RFGV Q+ K+ Q++    VL ++ATPIPRTL L  +   D+S I
Sbjct: 668 DVEFHDLGLLIIDEEQRFGVAQKEKIKQRSAGIDVLTLSATPIPRTLHLALVKGRDMSII 727

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R P++T +   +    V E L+  +  G + Y++  +IE         +     
Sbjct: 728 ESPPEDRLPVETYVAEYDD-GMVREALEREIRRGGRIYYVHNRIE--------GLSRIAA 778

Query: 509 SLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            L E     +I + HGRM++ + E VM  F  G   +L++TT+IE G+DV  A+ III+ 
Sbjct: 779 HLRELVPGITIGLAHGRMTEDELEDVMLGFYQGDFDVLLSTTIIENGLDVPLANTIIIDG 838

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           AE+FGL+QL+Q+RGRVGR   ++    LY     LS+ +  RL  +++  +   GF IA 
Sbjct: 839 AENFGLSQLYQMRGRVGRSSRLAYAYFLYKKDRVLSEVAQKRLQAIRDFTELGAGFKIAM 898

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            DL+ R  G +LG +Q G         +L+  LLE
Sbjct: 899 RDLEIRGAGNLLGAEQHGQIT--GVGFDLYCRLLE 931


>gi|149195831|ref|ZP_01872888.1| Transcription-repair coupling factor, MFD (superfamily II helicase
           ) [Lentisphaera araneosa HTCC2155]
 gi|149141293|gb|EDM29689.1| Transcription-repair coupling factor, MFD (superfamily II helicase
           ) [Lentisphaera araneosa HTCC2155]
          Length = 1062

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 150/455 (32%), Positives = 243/455 (53%), Gaps = 19/455 (4%)

Query: 224 ARERLAYDELLAGQIALLLMRKQ--FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            ++ L   E  A   A  L+R Q   +   GI    +         + P+  T  Q SAI
Sbjct: 476 WQKSLDKAENSARDYAAELLRLQAAREHSEGISFPKDNHWQSLFEESFPYEETPDQLSAI 535

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           +++ +DM +   M R+L GDVG GKT VA+ A   AV +  Q  I+ P  +LAQQH+   
Sbjct: 536 EEVKKDMERAKPMDRLLCGDVGFGKTEVAMRAAFKAVMSSHQVAIVVPTTVLAQQHFHSF 595

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            +   +  I +  ++  + +  +++ L+ +A G+  I++GTH L Q  I + KL L++VD
Sbjct: 596 SQRMSDFPIKIATLSRFISKKDQKQVLKEMAEGEVDIVVGTHRLLQKDINFQKLGLLVVD 655

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+ RFGV+ +  L +      +L M+ATPIPRTL L+  G  D S I   P  RKP++T+
Sbjct: 656 EEQRFGVESKEALKRMRVNVDILSMSATPIPRTLYLSMTGLRDFSTILTAPHNRKPVRTI 715

Query: 462 IIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           +   N  DE+IE  ++  L  G + Y++  +++  +    +          +   ++I I
Sbjct: 716 VTKEN--DEIIEVAIRRELERGGQVYYLHNRVKTIENVALKLK-------RQFPEANILI 766

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG+M + + E VM+ F +G  ++L+ TT+IE G+D+ +A+ ++I+ A+ FGL+ L+QLR
Sbjct: 767 GHGQMDEEELEMVMNEFTDGDGQILVCTTIIESGMDIRNANTMVIDRADRFGLSSLYQLR 826

Query: 581 GRVGRGEEISSCILLYHPPLS--KNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
           GRVGR    + C LL     +   N+  RLS L+       GF +A  DL+ R  G +LG
Sbjct: 827 GRVGRDHRQAYCYLLMPRDEAIMDNAKERLSALRKHTHPGAGFKLAMRDLEIRGAGNMLG 886

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            +QSG         EL+  LL+ + +D K  + QD
Sbjct: 887 SQQSGHI--AAVGFELYCQLLKKSVEDLKGSIHQD 919


>gi|325125148|gb|ADY84478.1| Transcriptional repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 1163

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 143/454 (31%), Positives = 229/454 (50%), Gaps = 22/454 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    +   A  E +A  +  L  +++ +   G   + +G          P+ PT  Q 
Sbjct: 557 EWAKTKKRVAARVEDIADDLIELYAKREAE--KGFAFSPDGSDQAAFEAAFPYEPTPDQL 614

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A  +I  DM +   M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQHY
Sbjct: 615 RATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHY 674

Query: 339 EFIKKYTQNTQII-----VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           + IK   +   +      +   +    QA  +K +  +  G   +++GTH +    +Q+ 
Sbjct: 675 QTIKDRFKGFPVKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQFK 734

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV  + KL Q  T   VL +TATPIPRTL ++ +G  D+S +   P 
Sbjct: 735 DLGLLIIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQ 794

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R PI+T ++       V E  +  +  G + +++  ++ + +E      V R   L   
Sbjct: 795 NRYPIQTYVLE-QLPGTVKEACQREMQRGGQVFYLHNRVGDIEE-----TVARLEQLLPE 848

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             + IA  HG+MS+   E ++  F +    +L+ TT+IE GID+ + + +IIE+A+H+GL
Sbjct: 849 --ARIAYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGL 906

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           +QL+QLRGR+GR   ++    LY P   L++    RL  +++  +   GF IA  DL  R
Sbjct: 907 SQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDLSIR 966

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
             G +LG +Q G    +     L+  +L  A K+
Sbjct: 967 GAGNMLGAQQHGFIDSVGYD--LYSQMLADAIKE 998


>gi|298369031|ref|ZP_06980349.1| transcription-repair coupling factor [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298283034|gb|EFI24521.1| transcription-repair coupling factor [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 723

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 152/449 (33%), Positives = 236/449 (52%), Gaps = 15/449 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  Q   + G    +     Q       +  T+ Q +AI  +++D++Q   M R++ G
Sbjct: 142 LNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCG 201

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VAL A   AV  G Q  ++AP  +L +QH +       +  + V  ++    
Sbjct: 202 DVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFTDFPVKVASLSRFNN 261

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               + ALE +A G   I+IGTH L QD I++  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 262 SKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 321

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L MTATPIPRTL +   G  D S IT  P+ R  +KT + P +    V E +   L 
Sbjct: 322 VDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE-GSVREAVLRELK 380

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  +++  +     ++ ER  +L     + I + HG++ + + E VM  F   
Sbjct: 381 RGGQVFFLHNEVDTIE-----NMRERLETLLPE--ARIGVAHGQLRERELEQVMRDFLQQ 433

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ +T+IE GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 434 RFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYI 493

Query: 601 SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +K++  RL  +        GF +A +DL+ R  GEILG  QSG  + +     L+  +L+
Sbjct: 494 TKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSG--EMIQVGFTLYTEMLK 551

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLY 686
            A +D K    + PDL +  G +  I L+
Sbjct: 552 QAVRDLKK--GRQPDLDAPLGITTEIKLH 578


>gi|260437494|ref|ZP_05791310.1| transcription-repair coupling factor [Butyrivibrio crossotus DSM
            2876]
 gi|292810127|gb|EFF69332.1| transcription-repair coupling factor [Butyrivibrio crossotus DSM
            2876]
          Length = 1177

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 157/604 (25%), Positives = 282/604 (46%), Gaps = 45/604 (7%)

Query: 63   EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRK 122
            EI E  +VT+ G + +   +   +   +  +  D       +F   K    K   ++G+ 
Sbjct: 445  EIKEGEVVTVCGKLRKGYEYPDIR---FAAVAEDD------IFSTAKKPKKKKKSYDGKS 495

Query: 123  ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
            I+             +    Y+ H +      +   +  +    +   + KI       L
Sbjct: 496  ISDF---------SELSIGDYVIHENH--GLGIYRGIEKIRVDKTEKDYIKIEYANGGNL 544

Query: 183  PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL 242
             +L   +  D++QK        A   ++        EWT    +     + +A ++  L 
Sbjct: 545  YILATQL--DMIQKYG--DREGAKPKLNR---LGSSEWTKTKTKVRGAVKQVADKLIKLY 597

Query: 243  MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
              +  ++      + +    Q+     P+ PT  Q +AI++I  DM     M R++ GDV
Sbjct: 598  ASRSARQG--FAFSKDTPWQQEFEELFPYEPTTDQLTAIEEIKTDMESTRIMDRLICGDV 655

Query: 303  GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
            G GKT VAL A   AV+   Q V + P  ILA+Q +       ++  + V +++      
Sbjct: 656  GFGKTEVALRAAFKAVQDNKQVVYLCPTTILAKQIFTNFDSRMKDFGVEVRMLSRFCTPK 715

Query: 363  HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
              +  +E +  G   +++GTH +    + +  L L+I+DE+ RFGV  + K+ Q   +  
Sbjct: 716  EAKNTIEGLKKGLVDVVVGTHKILSKDVSFKNLGLLIIDEEQRFGVAHKEKIKQMKESVD 775

Query: 423  VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            V+ ++ATPIPRTL ++ +G  D+S + E P  R PI+T +   +  + V E +   L+ G
Sbjct: 776  VITLSATPIPRTLHMSLIGIRDMSVLMEPPVDRIPIQTFVTEYDE-EMVREAVNRELARG 834

Query: 483  KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             + Y++  ++    E          N       +++A  HG+MS+ + E +M  F NG  
Sbjct: 835  GQVYYVYNKVLGIDEI-------TLNIAKLVPEANVAFAHGQMSERELEKIMMDFINGDI 887

Query: 543  KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--L 600
             +L++TT+IE G+D+ + + III +A  +GL+QL+QLRGRVGR   ++   L+Y     L
Sbjct: 888  DVLVSTTIIETGLDIPNVNTIIIHDANKYGLSQLYQLRGRVGRTGRMAYAFLMYKKDKVL 947

Query: 601  SKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP---ELHDS 654
            S+ +  RLS ++   D   GF IA +DL+ R  G +LG +Q G  + +        L+++
Sbjct: 948  SEIAEKRLSAIREFTDLGSGFRIAMKDLEIRGAGNMLGEEQHGHMEAVGYDLYCKMLNEA 1007

Query: 655  LLEI 658
            +LE+
Sbjct: 1008 VLEL 1011


>gi|237785157|ref|YP_002905862.1| transcription-repair coupling factor [Corynebacterium kroppenstedtii
            DSM 44385]
 gi|237758069|gb|ACR17319.1| transcription-repair coupling factor [Corynebacterium kroppenstedtii
            DSM 44385]
          Length = 1281

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 146/472 (30%), Positives = 245/472 (51%), Gaps = 20/472 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +A  +  L  ++Q     G   + +    +++  N PF+ T+ Q 
Sbjct: 644  DWKNTKKKARAAVRDIAADLVQLYAKRQAA--PGYAFSPDTPWQREMEDNFPFTETEDQY 701

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ + +DM +   M R++ GDVG GKT VA+ A   AV+ G Q V++ P  +LAQQH+
Sbjct: 702  NAIEAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVLLVPTTLLAQQHF 761

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  +   I +  ++        R+ L  +A GQ  I+IGTH L Q  +Q+  L LV
Sbjct: 762  ATFSERMEGFPITIRQLSRFTTPKQAREVLTGLAEGQVDIVIGTHRLLQTGVQWKNLGLV 821

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    +   +L M+ATPIPRTL ++  G  D+S I   P  R P+
Sbjct: 822  IVDEEQRFGVEHKEHIKALRSHVDMLTMSATPIPRTLEMSMAGIRDMSTILTPPEDRHPV 881

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T +  +    ++   ++  L    + +++  ++        RS+ +    + E    + 
Sbjct: 882  LTYV-GVQEDKQIAAAIRRELLRDGQVFYVHNRV--------RSIEQVAQHIRELVPEAR 932

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + + HG+M++   E+ ++ F +    +L+ TT++E G+D+ +A+ +I+ENA H GLAQLH
Sbjct: 933  VVVAHGQMNEDQLENTVEGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLAQLH 992

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR  E      LY P   L++ SY RLS +    D   G  +A +DL+ R  G 
Sbjct: 993  QLRGRVGRSRERGYAYFLYPPSQTLTETSYDRLSTIAQNNDLGAGMAVAMKDLEMRGAGN 1052

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP-DLTSVRGQSIRI 683
            +LG +QSG         +L+  L+  A +  K +    P D +    +  RI
Sbjct: 1053 VLGAEQSGHI--AGVGFDLYVRLVGEAVEAFKAMADGKPIDGSDKENKETRI 1102


>gi|330686080|gb|EGG97702.1| transcription-repair coupling factor [Staphylococcus epidermidis
            VCU121]
          Length = 1169

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 157/482 (32%), Positives = 244/482 (50%), Gaps = 20/482 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   KQ +  +G     + +       + P+  T  Q 
Sbjct: 568  EWKKTKAKVQQSVEDIADELIDLY--KQREMSVGYQFGPDTEEQSTFELDFPYELTPDQS 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM ++  M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 626  KSIDEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++I+        ++  E +  G   I++GTH L    I Y  L L+
Sbjct: 686  ETLIERMQDFPVEIQLISRFRSTKEVKETKEGLKSGYVDIVVGTHKLLGKDIHYKDLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 746  IVDEEQRFGVRHKERIKTLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 806  QTYVLEQN-TNFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+Q
Sbjct: 858  AVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +Q G    +     L+  +LE A  + + I  + PD+  V    + + L  Y   E 
Sbjct: 978  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGIKEEAPDVPDVE---VELNLDAYLPAEY 1032

Query: 694  FQ 695
             Q
Sbjct: 1033 IQ 1034


>gi|294650684|ref|ZP_06728038.1| transcription-repair coupling factor TRCF [Acinetobacter haemolyticus
            ATCC 19194]
 gi|292823475|gb|EFF82324.1| transcription-repair coupling factor TRCF [Acinetobacter haemolyticus
            ATCC 19194]
          Length = 1153

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 154/475 (32%), Positives = 244/475 (51%), Gaps = 23/475 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G    ++     +      +  T  Q +
Sbjct: 555  WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFAFELDHIAYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM     M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHYE
Sbjct: 613  AIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNAKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +T + +E+++         K +E +A G+  I++GTH + Q++IQ+  L L+I
Sbjct: 673  SFKDRFADTAVRIEVLSRFGSNKAHLKIIEDLADGKVDIVVGTHKILQENIQFNNLGLMI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSS 517
            T +   +  D + E +   L  G + Y++  ++E           ER      H    + 
Sbjct: 793  TFV-QEHTDDSIKEAILRELLRGGQVYFLHNEVETI---------ERAAENIRHLVPEAR 842

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A+ HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ IIIE A+  GLAQLH
Sbjct: 843  VAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQLH 902

Query: 578  QLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGE 632
            QLRGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE
Sbjct: 903  QLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGE 962

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            +LG +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 963  LLGEQQSGSMQAIGYS--LYMEMLEKATKAIQK--GKTPNFDAPLSLTAEINLHM 1013


>gi|295702293|ref|YP_003595368.1| transcription-repair coupling factor [Bacillus megaterium DSM 319]
 gi|294799952|gb|ADF37018.1| transcription-repair coupling factor [Bacillus megaterium DSM 319]
          Length = 1176

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 241/449 (53%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+  +  + +A  +  L   ++     G   + +G + ++     P+  T+ Q 
Sbjct: 572  DWKKVKRKVESSVQDIADDLIKLYAEREA--SKGYAFSPDGDLQREFETAFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             ++++I +DM  +  M R+L GDVG GKT VA+ A   AV  G Q  I+ P  ILAQQHY
Sbjct: 630  RSVQEIKKDMEHERPMDRLLCGDVGYGKTEVAIRAAFKAVTDGKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  +++ ++ + +G   ++IGTH L    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRSRKQQQETIKGLKNGTVDVVIGTHRLLSKDVIYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  VIDEEQRFGVTHKEKIKQMKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  V E ++  L+   + Y++  ++E+ +        E  + L     + +
Sbjct: 810  QTYVVEYNPV-LVREAIERELARDGQVYFLYNRVEDIE-----RKAEEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + E+V+ SF  G   ++++TT+IE G+D+ + + +I+ NA+  GL+QL+Q
Sbjct: 862  TYAHGKMNETELEAVILSFLEGEYDVIVSTTIIETGVDIPNVNTLIVNNADKMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     YH    L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFTYHKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +Q G    +     L+  +L+ A ++
Sbjct: 982  LGAQQHGFIDSVGFD--LYSQMLKEAIEE 1008


>gi|332297986|ref|YP_004439908.1| transcription-repair coupling factor [Treponema brennaborense DSM
            12168]
 gi|332181089|gb|AEE16777.1| transcription-repair coupling factor [Treponema brennaborense DSM
            12168]
          Length = 1185

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 141/447 (31%), Positives = 236/447 (52%), Gaps = 17/447 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W +   +     E +A ++  L  R++  +    P   + +         P+  T  Q +
Sbjct: 594  WENRKNKVKKSVEDIAQKLIDLYSRRKAARG--FPFPKDTEWQTAFEAAFPYDETDDQLT 651

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
               ++  DM +   M R++ GDVG GKT VA+ A   AV  G Q   +AP  ILA+QHYE
Sbjct: 652  VTAEVKADMEKPVPMDRLICGDVGYGKTEVAMRAAFKAVMGGKQVAFLAPTTILAEQHYE 711

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +  +N  + +  ++  + +A ++  LE++  G   I++GTH + Q  + + +L L+I
Sbjct: 712  TCTERFENFPVRIAHMSRFVSKAEQKNILEKLKTGGVDILVGTHRIIQKDVIFKELGLMI 771

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV+ + +L +  T    L M+ATPIPRTL ++ L   D+S +T  P  R+PI+
Sbjct: 772  IDEEQRFGVKDKERLKELKTNIDSLAMSATPIPRTLHMSLLKIRDMSLLTTPPQNRQPIE 831

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            TVI   N  D V   ++     G + +++  ++E  +E+  +        L       + 
Sbjct: 832  TVIDSYND-DRVATAIRREAERGGQVFYLHNRVETLEETRIK-----LEQLVPEML--VD 883

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              HG+MS  + + +   FK G   +L+ATT+IE GID+ + + III+ A+ +G++QL+QL
Sbjct: 884  TAHGQMSAGELDDIFRRFKMGGFHVLVATTIIENGIDIPNVNTIIIDRADMYGVSQLYQL 943

Query: 580  RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR +  +   LLY  +  LS+ +  RL V+ +      GF IA +D++ R  G +L
Sbjct: 944  RGRVGRSDRKAYAYLLYPENKALSEIAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLL 1003

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARK 661
            G  QSG  +      +L+  LLE A +
Sbjct: 1004 GKDQSG--EMYSVGFDLYLRLLEEAVQ 1028


>gi|251781475|ref|YP_002995776.1| putative transcription-repair coupling factor [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390103|dbj|BAH80562.1| putative transcription-repair coupling factor [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 1166

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 152/452 (33%), Positives = 235/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  ++ G   + +  + +    +  F  
Sbjct: 555 KLNDGRFQKTKQKVARQVEDIADDLLKLYA--ERSQQKGFSFSPDDDLQRAFDDDFAFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  K   +N  + V++++    +  + + LER+  GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYENFKARFENYPVEVDVLSRFRSKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++           ++   L E 
Sbjct: 793 NRYPVQTYVLE-NNPGLVREAIIREMDRGGQVFYVYNKVDTID--------KKVAELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 993


>gi|322433996|ref|YP_004216208.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX9]
 gi|321161723|gb|ADW67428.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX9]
          Length = 1233

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 163/534 (30%), Positives = 266/534 (49%), Gaps = 29/534 (5%)

Query: 174  IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEA--FNIIHNPRKAKDFEWTSPARERLAYD 231
            +I+E   +  +       DL+QK        A   N + NP       W           
Sbjct: 567  MILEFADQAKLYVPLTRLDLIQKYRSTETGPAPVLNKLGNP------AWQKTKARVKKAM 620

Query: 232  ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
              +AG++  L    Q K   G   + +  + ++     PF+ T  Q +AI DI +DM   
Sbjct: 621  ADMAGELIKLYA--QRKAAQGTAFSPDNNLQREFEDAFPFNETDDQLAAIADIKRDMEST 678

Query: 292  NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
              M R+L GDVG GKT VA+ A   AV+   Q  I+ P  +L+ QH+E  KK   N  + 
Sbjct: 679  QPMDRLLCGDVGYGKTEVAMRAAFKAVQDSKQVAILTPTTVLSFQHFESFKKRFANFPVK 738

Query: 352  VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
            VE+++       + + +E+   G+  I+IGTHA+    +++  L L++VDE+ RFGV+ +
Sbjct: 739  VEMLSRFRTAKEKAEIMEQTEQGKVDILIGTHAVLGQKLKFQDLGLLVVDEEQRFGVRHK 798

Query: 412  LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             +L Q   A  VL M+ATPIPRTL ++ +G  D+S I   P  R  I+T++   +    V
Sbjct: 799  ERLKQMRAAIDVLAMSATPIPRTLHMSLVGLRDMSVIETPPKDRMAIQTIVAKFDE-KLV 857

Query: 472  IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
               +++ L  G ++Y++  ++E   E       +         ++ + + HG+M + + E
Sbjct: 858  RTAIEMELERGGQSYFVHNRVETIYEMASMIREQV-------PSARVIVGHGQMPEAELE 910

Query: 532  SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             VM +F N    +L+AT++IE G+D+  A+ III  A+  GL++L+QLRGRVGR    + 
Sbjct: 911  RVMLAFMNHEYDVLVATSIIENGLDIPLANTIIINRADRHGLSELYQLRGRVGRSNRRAY 970

Query: 592  CILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              LL  P   L++ +  RL+ LK   D   GF IA  DL+ R  G +LG +QSG  + + 
Sbjct: 971  AYLLIPPDTELTEIARRRLAALKEFSDLGAGFKIAALDLELRGAGNMLGGEQSGHIEAI- 1029

Query: 647  AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL---YLYQYNEAFQFI 697
               E++ ++LE A    K      P  T+V    I + +   Y+ + N+  +  
Sbjct: 1030 -GFEMYTTMLEEAVNKLKGE-QDKPSETTVLNLGISVRIDADYIPEENQRLRMY 1081


>gi|259501958|ref|ZP_05744860.1| transcription-repair coupling factor [Lactobacillus antri DSM 16041]
 gi|259170135|gb|EEW54630.1| transcription-repair coupling factor [Lactobacillus antri DSM 16041]
          Length = 1185

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 148/486 (30%), Positives = 251/486 (51%), Gaps = 30/486 (6%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R   +  E +A ++  L  +++     G     +  +  +   N P++ T+ Q 
Sbjct: 578  EWAKTKRRVASKVEDIADELVDLYAKREAA--KGYAFPADDYLQAQFDANFPYTETRDQL 635

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +IK++ +DM +   M R+L GDVG GKT VA+ A+  AV  G Q   + P  +LAQQH+
Sbjct: 636  RSIKEVKRDMEKPRPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTVLAQQHF 695

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + + K      + + +++        ++    +A G   I++GTH +    +Q+  L LV
Sbjct: 696  DTLSKRFAGFPVKIALMSRFKTNQELKETDAGLAAGSIDIVVGTHRILSKDVQFRDLGLV 755

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL +TATPIPRTL ++ LG  D+S +   PAGR PI
Sbjct: 756  IVDEEQRFGVKHKERLKELKNNVDVLTLTATPIPRTLNMSMLGVRDLSVLETPPAGRFPI 815

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + + +   L+ G + Y++  ++ + +E+  +       +L     + I
Sbjct: 816  QTYVMEQNG-GAIRDGITRELNRGGQVYYLHNRVSDIEETVMK-----LQALVPD--ARI 867

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              IHG+M + + E+V+  F  G   +L+ T++IE G+D+ + + + +ENA+H GLAQL+Q
Sbjct: 868  GYIHGKMGENELETVLYDFIQGNYDVLVTTSIIETGVDIPNVNTLFVENADHLGLAQLYQ 927

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            +RGR+GR   ++    +Y P   L++    RL+ +++      GF IA  DL  R  G I
Sbjct: 928  IRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLAIRGAGNI 987

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEI-----------ARKDAKHILTQDPDL--TSVRGQS 680
            LG +Q G    +     L+ S+L             AR DA+  L  +  L  + V  Q 
Sbjct: 988  LGKQQHGFIDSVGYD--LYSSMLNEAVARKQGKKRAARADAEVELGVEAYLPDSYVNDQR 1045

Query: 681  IRILLY 686
             +I LY
Sbjct: 1046 QKIELY 1051


>gi|332981377|ref|YP_004462818.1| transcription-repair coupling factor [Mahella australiensis 50-1
           BON]
 gi|332699055|gb|AEE95996.1| transcription-repair coupling factor [Mahella australiensis 50-1
           BON]
          Length = 1159

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 142/446 (31%), Positives = 221/446 (49%), Gaps = 17/446 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW+    +       +AG++  L          G   + +     ++  + P+  T  Q 
Sbjct: 561 EWSKTKAKVRESVRKMAGELLKLYA--SRYTTKGHAFSPDTVWQAQLEESFPYQETPDQL 618

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I  DM     M R+L GDVG GKT VAL A   AV  G Q  ++ P  +LAQQHY
Sbjct: 619 QAIEEIKADMESDKPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVLVPTTVLAQQHY 678

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                      I V++I+       ++  ++ +  G   IIIGTHAL   +++++ L L+
Sbjct: 679 NTFTNRLAGFPIKVDVISRFRSVQEQKDIVKGLKSGDIDIIIGTHALLSSNVKFHDLGLL 738

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  +  + +      VL +TATPIPRTL ++  G  DIS I   P  R P+
Sbjct: 739 IVDEEQRFGVSHKEAIKRFKNNVDVLTLTATPIPRTLHMSLSGIRDISIIETPPEDRYPV 798

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  +  + + + +   L  G + Y++  +I               + L     + I
Sbjct: 799 QTYVVEYDE-NIIRDAILKELGRGGQVYFVYNRINSIDVMAIH-----LHELVPE--ARI 850

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+ HGRM D   E VM  F +G   +L+ TT+IE G+D+ + + +I+ +A+HFGLAQL+Q
Sbjct: 851 AVAHGRMGDDKLERVMMDFMDGYYDVLLCTTIIETGLDIPNVNTLIVYDADHFGLAQLYQ 910

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR   ++     Y     L++ +  RL  +        GF IA  DL+ R  G +
Sbjct: 911 LRGRVGRSNRLAYAYFTYKKDRVLTEEAEKRLHAITEFTEFGSGFKIALRDLEIRGAGNL 970

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIA 659
           LG +Q G    +     ++  LLE A
Sbjct: 971 LGAEQHGHMAAVGYD--MYCKLLEEA 994


>gi|288941951|ref|YP_003444191.1| transcription-repair coupling factor [Allochromatium vinosum DSM 180]
 gi|288897323|gb|ADC63159.1| transcription-repair coupling factor [Allochromatium vinosum DSM 180]
          Length = 1160

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 154/472 (32%), Positives = 240/472 (50%), Gaps = 19/472 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  +  R+  ++ +       G+         PF  T  Q+
Sbjct: 565  QWERIKHRAAQKAHDVAAELLDIHARRAARQGV--AFPEGGEDYAAFAAAFPFEETPDQQ 622

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+ +L DM+    M R++ GDVG GKT VA+ A   AV +G Q V++ P  +LAQQH+
Sbjct: 623  RAIESVLADMADPKPMDRVVCGDVGFGKTEVAMRAAFMAVHSGRQVVVLVPTTLLAQQHF 682

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E       +  + VE ++       ++  L+ +A G   I++GTH L Q +I++  L L 
Sbjct: 683  ENFSDRFADWPVRVESLSRFRTAKEQKAVLDGLADGTVDIVVGTHKLLQPTIRFKNLGLA 742

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+ + +L    +   VL +TATPIPRTL +   G  D+S I   P  R PI
Sbjct: 743  IIDEEHRFGVRHKEQLKNLRSEVDVLTLTATPIPRTLNMAMSGLRDLSIIATPPVERHPI 802

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT + P N    V E +   L  G + Y++  ++E  +     +  ++  +L     + +
Sbjct: 803  KTFVSPWND-ALVQEAVLRELKRGGQVYFLHNEVETIE-----NQAQKLEALIPE--ARV 854

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E +M  F +    LL+ TT+IE GIDV  A+ I+I  A+  GLAQLHQ
Sbjct: 855  AVAHGQMRERELERIMRDFYHQRSNLLVCTTIIESGIDVPSANTILINRADKLGLAQLHQ 914

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L+  P   ++ ++  RL  +++ ED   GF +A  DL+ R  GE+
Sbjct: 915  LRGRVGRSHHRAYAYLITPPTKAMTADAKKRLEAIESMEDLGAGFTLATHDLEIRGAGEL 974

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG +QSG          L+  LLE A +  K    + P+L         I L
Sbjct: 975  LGDEQSGQIT--EVGFTLYMELLERAVEALKS--GRAPELDRPLDHGTEIDL 1022


>gi|160878272|ref|YP_001557240.1| transcription-repair coupling factor [Clostridium phytofermentans
            ISDg]
 gi|160426938|gb|ABX40501.1| transcription-repair coupling factor [Clostridium phytofermentans
            ISDg]
          Length = 1179

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 151/462 (32%), Positives = 235/462 (50%), Gaps = 17/462 (3%)

Query: 214  KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            K    EW +   +     + +A ++  L   +Q K   G     +    ++     P+  
Sbjct: 570  KLNSVEWKNTKAKVKGAVKEIAKELVELYATRQAK--AGHSFCEDTVWQREFEEMFPYEE 627

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q  AI D  +DM  K  M R++ GDVG GKT +A+ A   A+  G Q V + P  IL
Sbjct: 628  TDDQLRAIDDTKRDMESKKIMDRLICGDVGYGKTEIAIRAAFKAISDGKQVVFLVPTTIL 687

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            AQQHY    +   N  I V+++      A ++K LE +  GQ  I+IGTH +    IQ+ 
Sbjct: 688  AQQHYNTFSQRMMNFPISVDMLCRFKTPAQQKKTLENLKKGQLDILIGTHRVLSKDIQFK 747

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L L+I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S + E P 
Sbjct: 748  NLGLLIIDEEQRFGVTHKEKIKQMKGDIDVLTLTATPIPRTLHMSLVGIRDMSVLEEPPV 807

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             R PI+T ++  N  + + E +   L+ G + Y++  ++    E            L   
Sbjct: 808  DRLPIQTFVLEHND-EIIREAINRELARGGQVYYVHNRVNGLDEITN-----TIARLVPD 861

Query: 514  FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++A  HG+M +   E +M  F NG   +L++TT+IE G+D+ + + +II+NA+  GL
Sbjct: 862  --ANVAFAHGQMHEHQLEKIMFEFINGEIDVLVSTTIIETGLDISNVNTMIIDNADQLGL 919

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            +QL+QLRGRVGR    S   L+Y     L + +  RL  +K       GF IA  DL+ R
Sbjct: 920  SQLYQLRGRVGRSNRTSFAFLMYKRDKLLKEVAEKRLQAIKEFTELGSGFKIAMRDLEIR 979

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
              G +LG +QSG  + +     L+  +L  A K  K  ++ +
Sbjct: 980  GAGNLLGAQQSGHMEAVGYD--LYCKMLNDAVKGLKGEISDE 1019


>gi|303239799|ref|ZP_07326323.1| transcription-repair coupling factor [Acetivibrio cellulolyticus CD2]
 gi|302592736|gb|EFL62460.1| transcription-repair coupling factor [Acetivibrio cellulolyticus CD2]
          Length = 1177

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 134/450 (29%), Positives = 228/450 (50%), Gaps = 19/450 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + LA ++  L   ++     G     +    ++     P+  T  Q 
Sbjct: 583  DWIKTKTKAKESLKELAEELIKLYAMREA--SEGHAFGSDTIWQKQFEEQFPYQETDDQL 640

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I++I +DM     M R+L GDVG GKT VA+ A+  AV  G Q   + P  +LAQQ Y
Sbjct: 641  KCIEEIKRDMESNKPMDRLLCGDVGYGKTEVAIRAIFKAVMDGKQVAYLVPTTVLAQQQY 700

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+  ++  + VE+++    Q  ++  L+ +  G   ++IGTH L Q  I +  L L+
Sbjct: 701  NNFKERMKDFPVTVEMVSRFRTQTEQKHILKDVKAGMVDVLIGTHRLLQKDIAFKNLGLL 760

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV  + K+        VL +TATPIPRTL ++ +G  DIS I + P  R P+
Sbjct: 761  VIDEEQRFGVMHKEKIKNMRANVDVLTLTATPIPRTLHMSMVGIKDISTIEDPPEERYPV 820

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T ++  N  + + E +   ++   + +++  ++        RS+  +   +      + 
Sbjct: 821  QTYVMEHNN-EVIKEAINREMARNGQVFYLYNRV--------RSINVKAAEIKNMVPDAR 871

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IA+ HG+M++ + E +M  F NG   +L+ T +IE G+D+ + + II+E+++  GLAQL+
Sbjct: 872  IAVAHGQMNESELEDIMFRFINGEYDVLVCTVIIESGLDMPNVNTIIVEDSDKMGLAQLY 931

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++   + Y     LS+ +  RL  +K       GF IA  DL+ R  G 
Sbjct: 932  QLRGRVGRSNRMAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAMRDLQIRGAGN 991

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            +LG +Q G    +     ++  LL  A  +
Sbjct: 992  LLGAQQHGHIDLVGYD--MYCRLLSEAVNE 1019


>gi|313635134|gb|EFS01462.1| transcription-repair coupling factor [Listeria seeligeri FSL
           N1-067]
          Length = 746

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 143/452 (31%), Positives = 238/452 (52%), Gaps = 19/452 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T  Q 
Sbjct: 141 EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSPDEEMQREFEDAFPYQETDDQL 198

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 199 RSIAEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 258

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ +  G   I++GTH L    ++Y+ L L+
Sbjct: 259 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKSGTVDIVVGTHRLLSKDVEYHDLGLL 318

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 319 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 378

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +   N +  V E ++  L+   + Y++  ++E           ++ + +      + 
Sbjct: 379 QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVETI--------TQKADEISAMVPDAR 429

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +AI HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+
Sbjct: 430 VAIAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLY 489

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGRVGR   I+    +Y     L + +  RLS +K       GF IA  DL  R  G 
Sbjct: 490 QLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGN 549

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           ILG +Q G    +     L+  +L+ A +  K
Sbjct: 550 ILGAQQHGFIDSVGFD--LYSQMLKEAIEAKK 579


>gi|322412921|gb|EFY03828.1| putative transcription-repair coupling factor [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 1166

 Score =  363 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L +  +  ++ G   + +  +      +  F  
Sbjct: 555 KLNDGRFQKTKQKVAKQVEDIADNL--LALYAERSQQKGFQFSPDDDLQWSFDDDFAFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I +I  DM     M  +L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TEDQIRSINEIKADMESVQPMDSLLIGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  K   +N  + V++++    +  + + LER+  GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYENFKARFENYPVEVDVLSRFRSKKEQAQTLERVRKGQIDIIIGTHRLLSKDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++           ++   L E 
Sbjct: 793 NRYPVQTYVLE-NNPGLVREAIIREMDRGGQVFYVYNKVDTID--------KKVAELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + +ENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLIDFINGEYDVLVATTIIETGVDISNVNTLFVENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 993


>gi|255657458|ref|ZP_05402867.1| transcription-repair coupling factor [Clostridium difficile
            QCD-23m63]
 gi|296449053|ref|ZP_06890843.1| transcription-repair coupling factor [Clostridium difficile NAP08]
 gi|296879876|ref|ZP_06903849.1| transcription-repair coupling factor [Clostridium difficile NAP07]
 gi|296262146|gb|EFH08951.1| transcription-repair coupling factor [Clostridium difficile NAP08]
 gi|296429165|gb|EFH15039.1| transcription-repair coupling factor [Clostridium difficile NAP07]
          Length = 1128

 Score =  363 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 139/451 (30%), Positives = 226/451 (50%), Gaps = 17/451 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT    +     E +   +  L  +++  K  G   + +     +     P+  T+ Q 
Sbjct: 564  EWTKAKAKVKKEIEDMTKDLIELYAKRE--KIQGYKFSKDTPWQAEFESLFPYQETEDQL 621

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI++  +DM     M R++ GDVG GKT VA+ ++  A     Q  ++ P  ILAQQHY
Sbjct: 622  KAIEETKKDMESSKVMDRLVCGDVGYGKTEVAIRSIFKACMDQKQVAVLVPTTILAQQHY 681

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+  +N  + VE+++       +++ +E    G   I+IGTH +    I    L LV
Sbjct: 682  NTFKERFENYPLRVEVLSRFKTPKQQKQIIEDAKKGLVDILIGTHRIISKDINLPNLGLV 741

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ +  L +  +   VL ++ATPIPRTL ++  G  D+S I E P  R P+
Sbjct: 742  VIDEEQRFGVKHKEALKKIKSTVDVLTLSATPIPRTLHMSLSGIRDMSVIEEPPQERHPV 801

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   ++   + + ++  LS G + +++  ++E  +E            L     + +
Sbjct: 802  ITYV-TESKESVIQDEIERELSRGGQVFFVYNRVEHIEEMAS-----MIQKLVPD--ARV 853

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HGRM+    E+++  F N    +L+ TT+IE G+D+ +A+ +II +A+  GLAQL+Q
Sbjct: 854  AVAHGRMTSKSLENIILGFLNKDYDVLVCTTIIETGMDISNANTMIIYDADKMGLAQLYQ 913

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR        LLY     LS+ +  RL  ++       GF IA  DL+ R  G I
Sbjct: 914  LRGRVGRSSRQGYAYLLYEKDKTLSEIAEKRLKAIREFTEFGSGFKIAMRDLEIRGAGNI 973

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            LG +Q G    +     L+  +L  A K  K
Sbjct: 974  LGSQQHGHMAVIGYD--LYVKMLNDAIKKVK 1002


>gi|297243627|ref|ZP_06927558.1| transcription-repair coupling factor [Gardnerella vaginalis AMD]
 gi|296888378|gb|EFH27119.1| transcription-repair coupling factor [Gardnerella vaginalis AMD]
          Length = 1202

 Score =  363 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 134/453 (29%), Positives = 228/453 (50%), Gaps = 19/453 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W     +   +   +A  +  L   R+Q +       + +    +++    P+  T  Q
Sbjct: 607  DWAQTKAKAKKHVHEIAENLIKLYSARQQSRG---FAFSKDTPWQKELEDAFPYQETADQ 663

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             + I ++  DM +   M R++ GDVG GKT +AL A   AV+   Q V++ P  +L QQH
Sbjct: 664  LTTIDEVKADMEKPIPMDRLICGDVGFGKTEIALRAAFKAVQDSKQVVVLVPTTLLVQQH 723

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE      +   + V  ++         + L  +  G   ++IGTH L   SI++  L L
Sbjct: 724  YETFTNRFEGFPVKVAAMSRFQTSKEIEETLAGLQDGSIDVVIGTHKLLNPSIKFKDLGL 783

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P
Sbjct: 784  VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP 843

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T +   +   +V   +K  L  G + +++  ++E+      +        L       
Sbjct: 844  VLTYVGAYDN-SQVAACIKRELLRGGQVFYVHNRVEDISSVASK-----IQELVPDV--R 895

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +AI HG+M +   ++V+  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLH
Sbjct: 896  VAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLH 955

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY P  P+++ S+ RLS +        GF +A +DL+ R  G 
Sbjct: 956  QLRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQHTALGSGFDVAMKDLELRGTGN 1015

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            +LG +QSG  +      +L+  ++  A +  K 
Sbjct: 1016 LLGDEQSGHIE--GVGFDLYVRMVSEAVEKYKE 1046


>gi|312869845|ref|ZP_07729986.1| transcription-repair coupling factor [Lactobacillus oris PB013-T2-3]
 gi|311094624|gb|EFQ52927.1| transcription-repair coupling factor [Lactobacillus oris PB013-T2-3]
          Length = 1178

 Score =  363 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 137/446 (30%), Positives = 236/446 (52%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R   +  E +A ++  L  +++     G     +  +  +   N P++ T+ Q 
Sbjct: 571  EWAKTKRRVESKVEDIADELVDLYAKREAA--KGYAFPADDYLQAQFDANFPYNETRDQL 628

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +IK++ +DM +   M R+L GDVG GKT VA+ A+  AV  G Q   + P  +LAQQH+
Sbjct: 629  RSIKEVKRDMEKPRPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTVLAQQHF 688

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + + K      + + +++        ++    +  G   I++GTH +    +Q+  L LV
Sbjct: 689  DTLSKSFAGFPVKIALMSRFKTNQELKETDAGLVDGSVDIVVGTHRILSKDVQFKDLGLV 748

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL +TATPIPRTL ++ LG  D+S +   PAGR PI
Sbjct: 749  IVDEEQRFGVKHKERLKELKNNVDVLTLTATPIPRTLNMSMLGVRDLSVLETPPAGRFPI 808

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + + +   ++ G + Y++  ++ + +E+  +       SL     + I
Sbjct: 809  QTYVMEQND-GAIRDGITREMNRGGQVYYLHNRVNDIEETVLK-----LQSLVPE--ARI 860

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              IHG+MS+ + E+V+  F      +L+ T++IE G+D+ + + + +ENA+H GLAQL+Q
Sbjct: 861  GYIHGKMSENELETVLYDFIQDNYDVLVTTSIIETGVDIPNVNTLFVENADHLGLAQLYQ 920

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            +RGR+GR   ++    +Y P   L++    RL+ +++      GF IA  DL  R  G I
Sbjct: 921  IRGRIGRSNRVAYAYFMYQPNKVLTEQGEKRLAAIRDFTELGSGFKIAMRDLAIRGAGNI 980

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G    +     L+ S+L  A
Sbjct: 981  LGKQQHGFIDSVGYD--LYSSMLNEA 1004


>gi|302877849|ref|YP_003846413.1| transcription-repair coupling factor [Gallionella capsiferriformans
           ES-2]
 gi|302580638|gb|ADL54649.1| transcription-repair coupling factor [Gallionella capsiferriformans
           ES-2]
          Length = 1134

 Score =  363 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 148/479 (30%), Positives = 235/479 (49%), Gaps = 19/479 (3%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
            K  +  W    R  +      A ++  +  ++  +   G    +  +  ++      F 
Sbjct: 535 HKLGNGAWDKAKRRAMQQVRDTAAELLNIYAQRATR--KGHAFKLTLRDYEEFAAGFGFE 592

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q +AI  +++D+     M R++ GDVG GKT VAL A   AV  G Q  ++ P  +
Sbjct: 593 ETPDQAAAINAVIEDLQSGKPMDRLICGDVGFGKTEVALRAAFVAVMDGKQVAVLVPTTL 652

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QHY+       +  I +  ++       + +AL+ +A G+  IIIGTH L Q  I++
Sbjct: 653 LAEQHYQNFSTRFADWPIRIGELSRFRSAKEQTQALKEMAEGKLDIIIGTHKLIQKGIEF 712

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             L L+I+DE+HRFGVQQ+ +L        +L +TATPIPRTL ++  G  D S I   P
Sbjct: 713 DNLGLLIIDEEHRFGVQQKERLKALRAEVDILTLTATPIPRTLAMSLEGLRDFSIIATAP 772

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             R  IKT +   ++   + E +   L  G + Y++  +++        ++ E+   L  
Sbjct: 773 QRRLSIKTFVSAYSQ-GVIREAVLRELKRGGQVYFLHNEVDTI-----ANMAEKLTELLP 826

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + I   HG+M + + E+VM  F      +L+ TT+IE GIDV  A+ II+  A+ FG
Sbjct: 827 E--ARIRTAHGQMGERELEAVMRDFYQQRFNILLCTTIIETGIDVPTANTIIMNRADRFG 884

Query: 573 LAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTR---LSVLKNTEDGFLIAEEDLKQ 627
           LAQLHQLRGRVGR    +   LL      L+  +  R   +  ++    GF +A  DL+ 
Sbjct: 885 LAQLHQLRGRVGRSHHQAYAYLLVDSLDGLTVQAKKRLEAIQAMEQLGSGFFLAMHDLEI 944

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
           R  GE+LG  QSG  + +     L+  +L  A    K    ++PD+    G +  I L+
Sbjct: 945 RGAGEVLGESQSGEMQEIGFS--LYTEMLNAAVASLKQ--GREPDMAHPLGVTTEINLH 999


>gi|306992391|gb|ADN19312.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  363 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 168/454 (37%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L KK    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  KDYVQEVEEFFDEEFLFKKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 449


>gi|220934531|ref|YP_002513430.1| transcription-repair coupling factor [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995841|gb|ACL72443.1| transcription-repair coupling factor [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1157

 Score =  363 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 158/494 (31%), Positives = 244/494 (49%), Gaps = 20/494 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     +  H P  K    +W    R+       +A ++  +  R+  ++      +
Sbjct: 535  HLVSRYTGADTEHAPLHKLGGEQWAKIRRKAAEKARDVAAELLEIYARRAARQGQ--SFD 592

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            V+         + PF  T  Q  AI+ +L+DM+    M R++ GDVG GKT VA+ A   
Sbjct: 593  VQATGYAAFADSFPFEETPDQARAIEAVLEDMASPRPMDRVVCGDVGFGKTEVAMRAAFV 652

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A  +G Q  ++ P  +LAQQHY+       +  I +E ++        +  LE +A G+ 
Sbjct: 653  AASSGQQVAVLVPTTLLAQQHYQNFSDRFADWPIRIESLSRFRSAKDTKAVLEGLADGRV 712

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L Q  +++ +L LVI+DE+HRFGV+ + +L        +L +TATPIPRTL 
Sbjct: 713  DIVIGTHKLIQGDVKFKRLGLVIIDEEHRFGVRHKERLKALRAEVDMLTLTATPIPRTLN 772

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   P  R  IKT I   N    + E +   +  G + Y++   +E   
Sbjct: 773  MALSGLRDLSIIATPPMERHAIKTFISQWND-ALIQEAITREIRRGGQVYFLHNAVESI- 830

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            E   R + E          + I I HG+M + + E VM  F +    +L+ TT++E GID
Sbjct: 831  ERKAREIAELV------PGADIGIAHGQMRESELEKVMLDFYHRRHNVLVCTTIVESGID 884

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            V  A+ III+ A+  GL+QLHQLRGRVGR    +   L+   P  ++ ++  RL  +++ 
Sbjct: 885  VPTANTIIIDRADKLGLSQLHQLRGRVGRSHHRAYAYLITPHPSAMTPDAVKRLEAIESL 944

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG  QSG  + +     L++ LLE A K  K    + P
Sbjct: 945  EDLGVGFTLASHDLEIRGAGELLGEGQSGQTQEI--GFTLYNELLERAVKAMKK--GEMP 1000

Query: 672  DLTSVRGQSIRILL 685
            DL     +   + L
Sbjct: 1001 DLDRPMAEVTEVDL 1014


>gi|254497711|ref|ZP_05110485.1| transcription repair coupling factor [Legionella drancourtii LLAP12]
 gi|254353058|gb|EET11819.1| transcription repair coupling factor [Legionella drancourtii LLAP12]
          Length = 1149

 Score =  363 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 155/496 (31%), Positives = 240/496 (48%), Gaps = 20/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     +  H P  K    +W    ++       +A ++  L  +++ +      +N
Sbjct: 530  HLISRYTGMDSEHAPLHKLGSDQWQREKKKAAEKIHDVAIELLDLYAKREAQPGHQYELN 589

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
                   K     PF+ T  Q  +I  I+ DM     M R++ GDVG GKT VA+ A   
Sbjct: 590  --HSEYIKFASAFPFTETVDQLQSINQIITDMQSSRPMDRLICGDVGFGKTEVAMRAAFV 647

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AV+   Q  I+ P  +LA QH+E  +    +  + +E+++           L  +  G+ 
Sbjct: 648  AVQNNKQVCILVPTTLLAGQHFESFRDRFADFAVNIELLSRFRSAKETEGVLASLKSGKT 707

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH LFQ +I +  L L+I+DE+HRFGV+Q+  +    T   +L MTATPIPRTL 
Sbjct: 708  DIVIGTHKLFQSNIAFKNLGLLIIDEEHRFGVKQKEHIKALRTHVDILSMTATPIPRTLN 767

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  DIS +T  PA R  IKT      +   V E +   +  G + +++   +E  +
Sbjct: 768  MAMAGIRDISLMTTPPAKRLAIKTFW-QEKKDSVVREAILREILRGGQVFFLHNNVETIE 826

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                  + +   +L     + +   HG+M + + E VM  F +    +L+ TT+IE GID
Sbjct: 827  -----RICQDLQTLVPE--AKVRSAHGQMRERELERVMSEFYHHRFNVLVCTTIIETGID 879

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ III+ A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RL  + + 
Sbjct: 880  IPTANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPDEKLLTSDAVKRLEAIVSL 939

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG  QSG    +     L   +L+ A  D K    + P
Sbjct: 940  EDLGAGFTLATHDLEIRGAGELLGEDQSGNMHAIGFN--LFMEMLDRAVSDLKA--GKIP 995

Query: 672  DLTSVRGQSIRILLYL 687
            +L++   Q   I L +
Sbjct: 996  ELSAPMYQGPEIDLRI 1011


>gi|169633480|ref|YP_001707216.1| transcription-repair coupling protein [Acinetobacter baumannii SDF]
 gi|169152272|emb|CAP01180.1| transcription-repair coupling protein [Acinetobacter baumannii]
          Length = 1153

 Score =  363 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 150/473 (31%), Positives = 245/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555  WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613  AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673  SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   L  G + Y++  ++E  +        E    L     + +A
Sbjct: 793  TFV-QEHTDASIKEAILRELLRGGQVYFLHNEVETIE-----RAAENIRVLVPE--ARVA 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE   K  +    + P+  +    +  I L++
Sbjct: 965  GEQQSGSMQAIGYS--LYMEMLEKETKAIQQ--GKTPNFDAPLSLTAEINLHI 1013


>gi|82701772|ref|YP_411338.1| transcription-repair coupling factor [Nitrosospira multiformis ATCC
            25196]
 gi|82409837|gb|ABB73946.1| transcription-repair coupling factor [Nitrosospira multiformis ATCC
            25196]
          Length = 1156

 Score =  363 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 150/484 (30%), Positives = 238/484 (49%), Gaps = 23/484 (4%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K    +W    R+ +      A ++  +  ++  +  +G    ++ +  +  +    F 
Sbjct: 552  HKLGSGQWDKAKRKAMQQVRDTAAELLNIYAQRAAR--VGHAFRLKEQDYEAFVEGFGFE 609

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI  ++ D++    M R++ GDVG GKT VAL A   AV  G Q  ++ P  +
Sbjct: 610  ETPDQATAIAAVIDDLTSARPMDRLICGDVGFGKTEVALRAAFVAVADGRQVAVLVPTTL 669

Query: 333  LAQQHYEFIKKYT----QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            LA+QH++          +   + +  ++       + +AL  +A GQ  I+IGTH L Q 
Sbjct: 670  LAEQHFQNFSDRFGLIAEEWPVKIAELSRFRSGKEQAQALAGLADGQIDIVIGTHKLIQK 729

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +++  L LVI+DE+HRFGV+ + +L    +   VL +TATPIPRTL L+  G  D S I
Sbjct: 730  GVRFKNLGLVIIDEEHRFGVRHKEQLKSLRSEVDVLTLTATPIPRTLALSLEGLRDFSVI 789

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
               P  R  IKT +   +    + E     L  G + Y++  ++        +++ ++  
Sbjct: 790  ATAPQRRLAIKTFVNRFSE-GIIREACLRELKRGGQIYFLHNEVSTI-----QTMHDKLA 843

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
             L     + I I HG+M + + E VM  F      LL+ TT+IE GIDV  A+ III  A
Sbjct: 844  RLLPE--ARIGIAHGQMRERELEHVMKDFYQQRFNLLLCTTIIETGIDVPTANTIIIHRA 901

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEE 623
            + FGLAQLHQLRGRVGR    +   LL      L   +  RL     ++    GF +A  
Sbjct: 902  DKFGLAQLHQLRGRVGRSHHQAYAYLLVPEEEALGTQARKRLEAVQSMEELGAGFYLAMH 961

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            DL+ R  GE+LG  QSG  + +     L+ ++LE A +  K    ++PD+    G +  I
Sbjct: 962  DLEIRGAGEVLGESQSGEMQEI--GFTLYANMLEAAVRSLKE--GKEPDMQHPLGVATEI 1017

Query: 684  LLYL 687
             L++
Sbjct: 1018 NLHV 1021


>gi|88800098|ref|ZP_01115668.1| transcription-repair coupling protein Mfd [Reinekea sp. MED297]
 gi|88777224|gb|EAR08429.1| transcription-repair coupling protein Mfd [Reinekea sp. MED297]
          Length = 1151

 Score =  363 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 149/501 (29%), Positives = 243/501 (48%), Gaps = 24/501 (4%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
             L+ + S   +  A        K  +  W    R+        A ++  +  R++ +   
Sbjct: 532  HLISRYSGADVDYAPI-----HKLGNDRWARTKRKAAEKIRDTAAELLDIYARREAQSGF 586

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            G P   +    Q+      F  T  Q  AI+ +L D+ Q   M R++ GDVG GKT VAL
Sbjct: 587  GFPF--DSTEYQQFAAGFGFEETDDQAQAIRKVLNDLRQPRPMDRLICGDVGFGKTEVAL 644

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A   A  +G Q  ++ P  +LAQQH+E  +    +  I +E+++        +  ++ +
Sbjct: 645  RAAFIAASSGKQVAVLVPTTLLAQQHFENFQDRFADWPINIEVLSRFNSSKKTQSIIDGL 704

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            A G+  I++GTH L Q S+++  L L+IVDE+HRFGV Q+  +        +L +TATPI
Sbjct: 705  ADGKVDIVVGTHKLLQKSVKFKDLGLLIVDEEHRFGVGQKETIKALRANVDILALTATPI 764

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            PRT+ ++  G  D+S I   PA R  +KT +   +    + E +   +  G + Y++  +
Sbjct: 765  PRTMNMSMSGVRDLSIIATPPAKRLSVKTFVREKDD-ALIKEAVLREILRGGQVYYLHNE 823

Query: 492  IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +   +++           L     + + + HG+M +   E +M  F +    +L+ TT+I
Sbjct: 824  VSTIEKTQAF-----LTELIPE--ARVVVAHGQMPERQLERIMSDFYHKRFNVLLCTTII 876

Query: 552  EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLS 609
            E GIDV  A+ I+IE A+ FGLAQLHQLRGRVGR    +   LL      L+K++  RL 
Sbjct: 877  ETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPGWKSLTKDAQKRLE 936

Query: 610  VLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
             + +++    GF +A  DL+ R  GE+LG +QSG  + +     L   LL  A    K  
Sbjct: 937  AIADSQHLGAGFTLATHDLEIRGAGELLGDEQSGHIEGIGFSLYLD--LLNKAVDALKK- 993

Query: 667  LTQDPDLTSVRGQSIRILLYL 687
              +   L  +  Q   + L +
Sbjct: 994  -GETLSLEDLEAQGPDVNLRI 1013


>gi|257438137|ref|ZP_05613892.1| transcription-repair coupling factor [Faecalibacterium prausnitzii
           A2-165]
 gi|257199468|gb|EEU97752.1| transcription-repair coupling factor [Faecalibacterium prausnitzii
           A2-165]
          Length = 1155

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 143/478 (29%), Positives = 233/478 (48%), Gaps = 21/478 (4%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           DLL + + P   E   +     K    EW     +     E +A ++  L  R+  ++  
Sbjct: 538 DLLSRYTAPGDEEKVKLA----KLGGAEWQRTRAKVKKAAEEMAQELIELYARR--RQAQ 591

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G     +G           +  T  Q  A  +I QDM +   M R+L GDVG GKT VAL
Sbjct: 592 GYAFPPDGDWQNDFETRFEYDETDDQLHATAEIKQDMEKPYPMDRLLCGDVGVGKTEVAL 651

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A    V  G Q  ++AP  +LA QHY  +    +   + + +++       +++ L  +
Sbjct: 652 RAAFKCVMGGKQCALLAPTTLLAWQHYNTLLSRMEAFPVKIGMLSRFRTAKQQKETLRGL 711

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G   I++GTH L    ++++ L LVI+DE+ RFGV+ + KL +      +L ++ATPI
Sbjct: 712 QSGSVDIVVGTHRLLSKDVRFHDLGLVIIDEEQRFGVKHKEKLKENFIGVDMLTLSATPI 771

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL +   G  D+S I + P  R+P++T ++  N +  + E +K  L+ G + Y++  +
Sbjct: 772 PRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDV-ILAEAMKKELARGGQVYYLHNR 830

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           ++     N  S     + L     + + I HG+M++ +   V     NG   +L+ TT+I
Sbjct: 831 VD-----NIESTAAHVSQLVPG--ARVGIAHGKMTEEELNPVWQHLLNGEIDILVCTTLI 883

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLS 609
           E GIDV + + +IIE+A+  GLAQL+Q+RGRVGR    +     +     L+  +  RLS
Sbjct: 884 ETGIDVRNCNTLIIEDADRMGLAQLYQIRGRVGRSGRKAYAYFTFRRDKTLTDIAQKRLS 943

Query: 610 VLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ++       GF IA  DL+ R  G +LG  Q G  + +     L+  +L  A   AK
Sbjct: 944 AIREFTAFGSGFRIAMRDLQIRGAGSLLGHSQHGHMEAVGYD--LYVKMLGQAIARAK 999


>gi|295104237|emb|CBL01781.1| transcription-repair coupling factor [Faecalibacterium prausnitzii
           SL3/3]
          Length = 1171

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 138/478 (28%), Positives = 231/478 (48%), Gaps = 21/478 (4%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           DLL + + P   E   +     K    EW     +     E +A ++  L  R+  ++  
Sbjct: 538 DLLSRYTAPGDEEKVKLA----KLGGTEWQRTRAKVKKATEEMAQELIELYARR--RQAT 591

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G     +G   +       +  T  Q  A  +I QDM +   M R+L GDVG GKT VAL
Sbjct: 592 GYAFPPDGDWQRDFETRFDYDETDDQLHATAEIKQDMEKGYPMDRLLCGDVGVGKTEVAL 651

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A    +  G Q  ++AP  +LA QHY  +    +   + + +++       +++ L  +
Sbjct: 652 RAAFKCIMGGKQCALLAPTTLLAWQHYNTLLSRMEAFPVKIGMLSRFRTAKQQKETLRGL 711

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G   I++GTH L    ++++ L LVI+DE+ RFGV+ + KL +      +L ++ATPI
Sbjct: 712 QAGSVDIVVGTHRLLSKDVKFHDLGLVIIDEEQRFGVKHKEKLKENFIGVDMLTLSATPI 771

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL +   G  D+S I + P  R+P++T ++  N +  + E +K  L+ G + Y++  +
Sbjct: 772 PRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDV-ILAEAMKKELARGGQVYYLHNR 830

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           ++  +                   + + I HG+M++ +   V     NG   +L+ TT+I
Sbjct: 831 VDNIEACAAHVS-------QMVPGARVGIAHGKMTEEELNPVWQHLLNGEIDILVCTTLI 883

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLS 609
           E GIDV + + +IIE+A+  GLAQL+Q+RGRVGR    +     +     L+  +  RLS
Sbjct: 884 ETGIDVRNCNTLIIEDADRMGLAQLYQIRGRVGRSGRKAYAYFTFRRDKTLTDIAQKRLS 943

Query: 610 VLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ++       GF IA  DL+ R  G +LG  Q G  + +     L+  +L  A   A+
Sbjct: 944 AIREFTAFGSGFRIAMRDLQIRGAGSLLGHSQHGHMEAVGYD--LYVKMLGQAIARAR 999


>gi|289551698|ref|YP_003472602.1| Transcription-repair coupling factor [Staphylococcus lugdunensis
            HKU09-01]
 gi|289181229|gb|ADC88474.1| Transcription-repair coupling factor [Staphylococcus lugdunensis
            HKU09-01]
          Length = 1173

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 157/464 (33%), Positives = 240/464 (51%), Gaps = 17/464 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +  +G     +    Q    + P+  T  Q 
Sbjct: 568  EWKKTKAKVQQSVEDIAEELIALY--KEREMSVGYQFGEDTAEQQAFELDFPYELTPDQA 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I  DM  +  M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 626  KSIEEIKADMELQKPMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        RK  E +  G   I++GTH L    I+Y  L L+
Sbjct: 686  ETLIERMQDFPVEIQLVSRFRTAKEVRKTKEGLKSGYVDIVVGTHKLLSKDIRYKDLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++    T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 746  IVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     +SI
Sbjct: 806  QTYVLEQN-TNFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPE--ASI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF NG   +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+Q
Sbjct: 858  AVAHGQMTERDLEETMLSFINGDYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L   +  L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSSRIGYAYFLHPTNKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            LG +Q G    +     L+  +LE A  + + I  + PD   V 
Sbjct: 978  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGITEETPDTPEVE 1019


>gi|224824692|ref|ZP_03697799.1| transcription-repair coupling factor [Lutiella nitroferrum 2002]
 gi|224603185|gb|EEG09361.1| transcription-repair coupling factor [Lutiella nitroferrum 2002]
          Length = 1129

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 147/449 (32%), Positives = 228/449 (50%), Gaps = 15/449 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  Q     G   ++             F  T  Q SAI+ ++ DM     M R++ G
Sbjct: 558 LNLYAQRAAREGHAFSLNHHDYDAFAAGFGFEETPDQASAIEAVIADMCSGKPMDRLVCG 617

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VAL A   AV  G Q  ++ P  +LA+QH++       +  + +  ++    
Sbjct: 618 DVGFGKTEVALRAAFVAVLGGKQVAVLVPTTLLAEQHFQNFSDRFADWPVKIAELSRFRS 677

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               + AL  +A G   I+IGTH L Q  +Q+  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 678 AKESKAALAGLAEGTVDIVIGTHKLVQPDVQFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 737

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL +TATPIPRTL +   G  D S IT  P+ R  +KT I P+     + E +   L 
Sbjct: 738 VDVLTLTATPIPRTLSMALEGLRDFSAITTAPSRRLAVKTFISPLAN-GVIREAVLRELK 796

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  +++       +++ E+   L     + I + HG++ + + E VM  F   
Sbjct: 797 RGGQVFFLHNEVDTI-----QNMQEKLAELLPE--ARIGVAHGQLRERELEQVMRDFLQQ 849

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              LL+ +T+IE GID+ +A+ I+I  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 850 RFNLLLCSTIIETGIDIPNANTILINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPDGM 909

Query: 601 SKNSYTRLSVL---KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           ++++  RL  +   +    GF +A  DL+ R  GE+LG  QSG  +       L   +L+
Sbjct: 910 TRDAQKRLEAIQLSEELGAGFYLAMHDLEIRGAGEVLGEGQSG--EMQEVGFALFTEMLK 967

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLY 686
            A +D K    + PDL +  G +  I L+
Sbjct: 968 QAVRDLKK--GKTPDLDAPLGVTTEINLH 994


>gi|50913352|ref|YP_059324.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS10394]
 gi|50902426|gb|AAT86141.1| Transcription-repair coupling factor [Streptococcus pyogenes
           MGAS10394]
          Length = 1167

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 152/452 (33%), Positives = 236/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  ++ G   + +  + +    +  F  
Sbjct: 555 KLNDGRFQKTKQKVARQVEDIADDLLKLYA--ERSQQKGFSFSPDDDLQRAFDDDFAFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  K   +N  + V++++    +  + + LER+  GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYENFKARFENYPVEVDVLSRFRSKKEQAETLERVQKGQIDIIIGTHRLLSKDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++  +        ++   L E 
Sbjct: 793 NRYPVQTYVLE-NNPGLVREAIIREMDRGGQIFYVYNKVDTIE--------KKVAELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 993


>gi|229542275|ref|ZP_04431335.1| transcription-repair coupling factor [Bacillus coagulans 36D1]
 gi|229326695|gb|EEN92370.1| transcription-repair coupling factor [Bacillus coagulans 36D1]
          Length = 1179

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 143/461 (31%), Positives = 239/461 (51%), Gaps = 20/461 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  +  + +A  +  L   ++     G   + +G + ++     P+  T+ Q 
Sbjct: 570  EWKRVKRKVQSSIQDIADDLVKLYAEREA--SKGFAFSPDGDMQREFEAAFPYKETEDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  ILAQQH+
Sbjct: 628  RSIQEIKRDMEKEKPMDRLLCGDVGYGKTEVAIRAAFKAMMDGKQVAMLVPTTILAQQHF 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +      I V +++    +  + + ++ + +G   ++IGTH L    IQ++ L L+
Sbjct: 688  ETVTERFHGYPIKVGLLSRFRTRKEQNETIKGLRNGTIDMVIGTHRLLSKDIQFHDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ +  T   VL +TATPIPRTL ++ +G  D+S I   P  R P+
Sbjct: 748  IIDEEQRFGVSHKEKIKKLKTNVDVLTLTATPIPRTLHMSMVGVRDLSVIETPPENRFPV 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  L+   + Y++  +IE+ +        E    L     + +
Sbjct: 808  QTYVLEYND-QMVREAIERELARDGQVYFLYNRIEDIE-----RKAEEIARLVPD--ARV 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HGRM++   ESV+  F  G   +L+ TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 860  AYAHGRMTESQLESVIFGFLEGEYDVLVTTTIIETGVDIPNVNTLIVNDADRMGLSQLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ S  RL  +K       GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSNRVAYAYFTYRKDKVLAEASEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLLE---IARKDAKHILTQDP 671
            LG +Q G    +     L+  +L+    ARK A     + P
Sbjct: 980  LGAQQHGFIDSVGFD--LYSQMLKEAIEARKGADGEEEKLP 1018


>gi|28894918|ref|NP_801268.1| transcription-repair coupling factor [Streptococcus pyogenes SSI-1]
 gi|28810163|dbj|BAC63101.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes SSI-1]
          Length = 1167

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 152/452 (33%), Positives = 236/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  ++ G   + +  + +    +  F  
Sbjct: 555 KLNDGRFQKTKQKVARQVEDIADDLLKLYA--ERSQQKGFSFSPDDDLQRAFDDDFAFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  K   +N  + V++++    +  + + LER+  GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYENFKARFENYPVEVDVLSRFRSKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++  +        ++   L E 
Sbjct: 793 NRYPVQTYVLE-NNPGLVREAIIREMDRGGQIFYVYNKVDTIE--------KKVAELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 993


>gi|90413103|ref|ZP_01221100.1| putative transcription-repair coupling factor [Photobacterium
            profundum 3TCK]
 gi|90325946|gb|EAS42392.1| putative transcription-repair coupling factor [Photobacterium
            profundum 3TCK]
          Length = 1151

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 149/473 (31%), Positives = 242/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++       +A ++  +  +++ K   G    ++ +         PF  T  Q  
Sbjct: 554  WVKARKKAAEKVRDVAAELLDVYAKRELK--PGFKFTLDRESYADFCSGFPFEETHDQAL 611

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   A++   Q  ++ P  +LAQQH+E
Sbjct: 612  AINSVLSDMCQPRAMDRLVCGDVGFGKTEVAMRAAFVAIDNNKQVTVLVPTTLLAQQHFE 671

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    NT + VE+++       +++ +     G+  I+IGTH L   S++Y+ L L++
Sbjct: 672  NFRDRFANTAVRVEVLSRFKTAKEQKQVMLDAEDGKIDILIGTHKLLNASVKYHDLGLLV 731

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 732  VDEEHRFGVRQKEKIKAIRADIDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 791

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    V E +   ++ G + Y++  +++  +++      E    L     + I 
Sbjct: 792  TFVRERDD-AIVREAVLREITRGGQVYFLHNEVDSIEKTT-----EELAKLIPE--ARIT 843

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              HG+M + + E VM  F +    LL+ TT+IE GID+  A+ II+  A++ GLAQLHQL
Sbjct: 844  FAHGQMRERELEKVMGDFYHQRFNLLVCTTIIETGIDIPTANTIIMNRADNLGLAQLHQL 903

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      ++K++  RL  +++ ED   GF +A  DL+ R  GE+L
Sbjct: 904  RGRVGRSHHQAYAYLLTPHKKRMTKDAVKRLEAIESLEDLGAGFTLATHDLEIRGAGELL 963

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L   +LE A +  K    ++  L  +  +   + L L
Sbjct: 964  GDEQSGQIQSIGFS--LFMEMLEQAVEALKE--GKESSLDDLLRKQTEVELRL 1012


>gi|300870408|ref|YP_003785279.1| transcription-repair coupling factor [Brachyspira pilosicoli 95/1000]
 gi|300688107|gb|ADK30778.1| transcription-repair coupling factor [Brachyspira pilosicoli 95/1000]
          Length = 1196

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 150/454 (33%), Positives = 230/454 (50%), Gaps = 22/454 (4%)

Query: 223  PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             ++ R          I +  +R      I  P   + +       +  +  T  Q  AI 
Sbjct: 567  KSKAREDALATARDLIKIYAIRSNVHGNIYGP---DTQWQDDFEASFNYEETVDQLRAIN 623

Query: 283  DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
            DI  DM     M R++ GDVG GKT VA  A+  AV AG Q  I+ P  IL+QQHY   K
Sbjct: 624  DIKSDMESDKMMDRLVCGDVGFGKTEVAFRAIFKAVMAGKQCAILCPTTILSQQHYNNAK 683

Query: 343  KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
            K  ++  + +E++   +     +K  E +A+G   IIIGTH L  D I++  L L+++DE
Sbjct: 684  KRFEDFPVRIEVLNRFISSRQAKKNKEMLANGSCDIIIGTHMLLSDDIKFKNLGLIVIDE 743

Query: 403  QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            + RFGV+ +  L +      VL ++ATPIPRTL +   G  DIS I   P  R P+KT +
Sbjct: 744  EQRFGVKHKEALKKLRFETDVLTLSATPIPRTLNMALTGIRDISIIETPPLNRIPVKTYV 803

Query: 463  IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAI 520
            +  N    V+  ++  L    + +++  +I+           E F  + +     +SI +
Sbjct: 804  MEFNE-KTVVNAIERELKRNGQVFYLYNRIDTI---------ESFALMIKKLCPKASICV 853

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HGRM+ I  E +M  F N    +L++TT+IE GID+ +A+ I+I++A   GL++L+QLR
Sbjct: 854  AHGRMTGIQLEKIMSDFINHKYDILVSTTIIENGIDIPNANTILIDSANKLGLSELYQLR 913

Query: 581  GRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILG 635
            GRVGR +  +   + Y     L++ +Y RL  +    D   GF IA  DL+ R  G ILG
Sbjct: 914  GRVGRSDREAYAYMFYPENLALTEVAYKRLQAISEHTDLGAGFKIAMRDLEIRGAGNILG 973

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
             +QSGM        EL+  +LE A  + K  + +
Sbjct: 974  KEQSGMI--YQVGYELYTQMLEEATNEYKGEIKE 1005


>gi|71902673|ref|YP_279476.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS6180]
 gi|71801768|gb|AAX71121.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS6180]
          Length = 1167

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 152/452 (33%), Positives = 237/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  ++ G   + +  + +    +  F  
Sbjct: 555 KLNDGRFQKTKQKVARQVEDIADDLLKLYA--ERSQQKGFSFSPDDDLQRAFDDDFAFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  K   +N  + V++++    +  + + LER+  GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYENFKARFENYPVEVDVLSRFRSKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++  +        ++ + L E 
Sbjct: 793 NRYPVQTYVLE-NNPGLVREAIIREMDRGGQIFYVYNKVDTIE--------KKVSELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 993


>gi|56808860|ref|ZP_00366571.1| COG1197: Transcription-repair coupling factor (superfamily II
           helicase) [Streptococcus pyogenes M49 591]
          Length = 1167

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 152/452 (33%), Positives = 236/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  ++ G   + +  + +    +  F  
Sbjct: 555 KLNDGRFQKTKQKVARQVEDIADDLLKLYA--ERSQQKGFSFSPDDDLQRAFDDDFAFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  K   +N  + V++++    +  + + LER+  GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYENFKARFENYPVEVDVLSRFRSKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++  +        ++   L E 
Sbjct: 793 NRYPVQTYVLE-NNPGLVREAIIREMDRGGQIFYVYNKVDTIE--------KKVAELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 993


>gi|295694758|ref|YP_003587996.1| transcription-repair coupling factor [Bacillus tusciae DSM 2912]
 gi|295410360|gb|ADG04852.1| transcription-repair coupling factor [Bacillus tusciae DSM 2912]
          Length = 1174

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 143/464 (30%), Positives = 236/464 (50%), Gaps = 18/464 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW        +    +A ++  L    Q     G   + +    ++     P+  T  Q 
Sbjct: 568  EWAKVKNRVRSSIRDIAEELVKLYA--QRMASPGHAFSPDTPWQKEFEAMFPYRETPDQL 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI++I +DM Q   M R+L GDVG GKT VA+ A   AV  G Q  ++ P  +LAQQHY
Sbjct: 626  KAIEEIKRDMEQPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVPTTVLAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  ++  Q   I +++++    +    + L+++  G   IIIGTH L Q  +++  L L+
Sbjct: 686  ETFRERFQGFPISIDVVSRFRTRGEMSQVLKQLRAGTVDIIIGTHRLLQKDVKFKDLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + +L Q  T    L +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 746  IVDEEQRFGVTHKERLKQLKTNVDCLTLTATPIPRTLHMSMLGVRDLSIIETPPENRFPV 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  + +    E ++  +  G + Y++  ++++ +      + +    L     + +
Sbjct: 806  QTYVLEYDDL-LAKEAIEREIGRGGQVYFLYNKVQDIE-----QMADHVRRLVPD--AKV 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M +   E VM  F +G   +L+ TT+IE G+D+ + + +I+ +A+H GL+QL+Q
Sbjct: 858  AVAHGQMPEDHLELVMLEFLHGEHDVLVTTTIIETGLDIPNVNTLIVYDADHLGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+     Y P   L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSSRIAYAYFTYQPEKVLTEVAEKRLQAIKEFTELGSGFKIALRDLSIRGAGNL 977

Query: 634  LGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            LG +Q G      F +    L D++ E+  +    ++    +L 
Sbjct: 978  LGPEQHGFIASVGFDLYSDMLADAIRELKGESLPQVVEPQVELA 1021


>gi|306992393|gb|ADN19313.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 168/454 (37%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L KK    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LKDYVQEVEEFFDEEFLFKKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|94993402|ref|YP_601500.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS10750]
 gi|94546910|gb|ABF36956.1| Transcription-repair coupling factor [Streptococcus pyogenes
           MGAS10750]
          Length = 1167

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 152/452 (33%), Positives = 236/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  ++ G   + +  + +    +  F  
Sbjct: 555 KLNDGRFQKTKQKVARQVEDIADDLLKLYA--ERSQQKGFSFSPDDDLQRAFDDDFAFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  K   +N  + V++++    +  + + LER+  GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYENFKARFENYPVEVDVLSRFRSKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++  +        ++   L E 
Sbjct: 793 NRYPVQTYVLE-NNPGLVREAIIREMDRGGQIFYVYNKVDTIE--------KKVAELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 993


>gi|15674256|ref|NP_268429.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes M1 GAS]
 gi|71909820|ref|YP_281370.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS5005]
 gi|13621331|gb|AAK33151.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes M1 GAS]
 gi|71852602|gb|AAZ50625.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS5005]
          Length = 1167

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 152/452 (33%), Positives = 236/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  ++ G   + +  + +    +  F  
Sbjct: 555 KLNDGRFQKTKQKVARQVEDIADDLLKLYA--ERSQQKGFSFSPDDDLQRAFDDDFAFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  K   +N  + V++++    +  + + LER+  GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYENFKARFENYPVEVDVLSRFRSKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++  +        ++   L E 
Sbjct: 793 NRYPVQTYVLE-NNPGLVREAIIREMDRGGQIFYVYNKVDTIE--------KKVAELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 993


>gi|21909542|ref|NP_663810.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes MGAS315]
 gi|21903722|gb|AAM78613.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes MGAS315]
          Length = 1139

 Score =  363 bits (931), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 152/452 (33%), Positives = 236/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  ++ G   + +  + +    +  F  
Sbjct: 527 KLNDGRFQKTKQKVARQVEDIADDLLKLYA--ERSQQKGFSFSPDDDLQRAFDDDFAFVE 584

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 585 TEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 644

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  K   +N  + V++++    +  + + LER+  GQ  IIIGTH L    + + 
Sbjct: 645 AQQHYENFKARFENYPVEVDVLSRFRSKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFS 704

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 705 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 764

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++  +        ++   L E 
Sbjct: 765 NRYPVQTYVLE-NNPGLVREAIIREMDRGGQIFYVYNKVDTIE--------KKVAELQEL 815

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 816 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMG 875

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 876 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 935

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 936 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 965


>gi|209558593|ref|YP_002285065.1| Transcription-repair coupling factor [Streptococcus pyogenes NZ131]
 gi|209539794|gb|ACI60370.1| Transcription-repair coupling factor [Streptococcus pyogenes NZ131]
          Length = 1139

 Score =  363 bits (931), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 152/452 (33%), Positives = 236/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  ++ G   + +  + +    +  F  
Sbjct: 527 KLNDGRFQKTKQKVARQVEDIADDLLKLYA--ERSQQKGFSFSPDDDLQRAFDDDFAFVE 584

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 585 TEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 644

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  K   +N  + V++++    +  + + LER+  GQ  IIIGTH L    + + 
Sbjct: 645 AQQHYENFKARFENYPVEVDVLSRFRSKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFS 704

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 705 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 764

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++  +        ++   L E 
Sbjct: 765 NRYPVQTYVLE-NNPGLVREAIIREMDRGGQIFYVYNKVDTIE--------KKVAELQEL 815

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 816 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMG 875

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 876 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 935

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 936 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 965


>gi|330445693|ref|ZP_08309345.1| transcription-repair coupling factor [Photobacterium leiognathi
            subsp. mandapamensis svers.1.1.]
 gi|328489884|dbj|GAA03842.1| transcription-repair coupling factor [Photobacterium leiognathi
            subsp. mandapamensis svers.1.1.]
          Length = 1143

 Score =  363 bits (931), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 152/473 (32%), Positives = 243/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++       +A ++  +  +++ K   G    ++ +   +     P+  T  Q  
Sbjct: 546  WAKARKKAAEKVRDVAAELLDVYAKRELK--PGFKFTLDREAYAEFSAGFPYEETYDQAL 603

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQH+E
Sbjct: 604  AINAVLSDMCQTKVMDRLVCGDVGFGKTEVAMRAAFVAVDNNKQVTVLVPTTLLAQQHFE 663

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    NT I VE+++       +++ L  +  G+  I+IGTH L   S+ Y+ L L+I
Sbjct: 664  NFRDRFANTPIRVEVLSRFKTAKEQKQILADVEEGKVDILIGTHKLLNSSVNYHDLGLLI 723

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 724  VDEEHRFGVRQKEKIKAIRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 783

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +S G + Y++  +++  +++      E    L     + + 
Sbjct: 784  TFV-RQSEDAVIREAVLREISRGGQVYFLHNEVDTIEKTT-----EDLAKLIPE--ARVT 835

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              HG+M + + E +M  F +    +L+ TT+IE GIDV  A+ II++ A++ GLAQLHQL
Sbjct: 836  FAHGQMRERELEKIMGDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQL 895

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 896  RGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISSLEDLGAGFTLATHDLEIRGAGELL 955

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG          L   +LE A +  K    ++P L  +  Q   + L +
Sbjct: 956  GDEQSGQI--QSVGFSLFMEMLEQAVEALKE--GKEPSLDDLLKQQTEVELRI 1004


>gi|312792831|ref|YP_004025754.1| transcription-repair coupling factor [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179971|gb|ADQ40141.1| transcription-repair coupling factor [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 1141

 Score =  363 bits (931), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 135/440 (30%), Positives = 229/440 (52%), Gaps = 18/440 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++     E++A  +  L  ++Q     G   + +    ++     P++ T+ Q 
Sbjct: 554 EWQKQKQKVRKSLEIVAKDLVELYAKRQL--HKGFKFSKDTLWQKEFEEKFPYTETEGQL 611

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I +DM  +  M RIL GDVG GKT VA+ A   AV    Q  ++ P  ILAQQHY
Sbjct: 612 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 671

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                  ++  + +E+++    +  ++K ++ +  G   I+IGTH L    +++  L L+
Sbjct: 672 MTFSARMKDFPVTIEVLSRLKNETQQKKIIKGLKEGTIDIVIGTHRLLSSDVKFKDLGLL 731

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+H+FGV+ + K+ +  T   VL +TATPIPRTL +  LG  D+S I + P  R P+
Sbjct: 732 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRYPV 791

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS- 517
           +T ++  N    + E +   +S G + +++  +I++ +        E    L      S 
Sbjct: 792 QTFVLEYNER-IIKEAILREISRGGQVFYLYNRIKDIQ--------EVAAKLQNLVGDSI 842

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A  HG+M + + E V+  F  G   +L+ TT+IE G+D+ + + +I+E+++  GLAQL
Sbjct: 843 KVACAHGQMPEEELERVLLDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLAQL 902

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           +QLRGRVGR   ++     +     LS+ +  RL+ +K       GF IA  DL+ R  G
Sbjct: 903 YQLRGRVGRSNRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRGAG 962

Query: 632 EILGIKQSGMPKFLIAQPEL 651
            +LG  Q G    +     +
Sbjct: 963 SVLGKLQHGHINSVGYDMYI 982


>gi|160944870|ref|ZP_02092097.1| hypothetical protein FAEPRAM212_02386 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444054|gb|EDP21058.1| hypothetical protein FAEPRAM212_02386 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1171

 Score =  363 bits (931), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 138/478 (28%), Positives = 231/478 (48%), Gaps = 21/478 (4%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           DLL + + P   E   +     K    EW     +     E +A ++  L  R+  ++  
Sbjct: 538 DLLSRYTAPGDEEKVKLA----KLGGTEWQRTRAKVKKATEEMAQELIELYARR--RQAT 591

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G     +G   +       +  T  Q  A  +I QDM +   M R+L GDVG GKT VAL
Sbjct: 592 GYAFPPDGDWQRDFETRFDYDETDDQLHATAEIKQDMEKGYPMDRLLCGDVGVGKTEVAL 651

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A    +  G Q  ++AP  +LA QHY  +    +   + + +++       +++ L  +
Sbjct: 652 RAAFKCIMGGKQCALLAPTTLLAWQHYNTLLSRMEAFPVKIGMLSRFRTAKQQKETLRGL 711

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G   I++GTH L    ++++ L LVI+DE+ RFGV+ + KL +      +L ++ATPI
Sbjct: 712 QAGSVDIVVGTHRLLSKDVKFHDLGLVIIDEEQRFGVKHKEKLKENFIGVDMLTLSATPI 771

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL +   G  D+S I + P  R+P++T ++  N +  + E +K  L+ G + Y++  +
Sbjct: 772 PRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDV-ILAEAMKKELARGGQVYYLHNR 830

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           ++  +                   + + I HG+M++ +   V     NG   +L+ TT+I
Sbjct: 831 VDNIEACAAHVS-------QMVPGARVGIAHGKMTEEELNPVWQHLLNGEIDILVCTTLI 883

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLS 609
           E GIDV + + +IIE+A+  GLAQL+Q+RGRVGR    +     +     L+  +  RLS
Sbjct: 884 ETGIDVRNCNTLIIEDADRMGLAQLYQIRGRVGRSGRKAYAYFTFRRDKTLTDIAQKRLS 943

Query: 610 VLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ++       GF IA  DL+ R  G +LG  Q G  + +     L+  +L  A   A+
Sbjct: 944 AIREFTAFGSGFRIAMRDLQIRGAGSLLGHSQHGHMEAVGYD--LYVKMLGQAIARAR 999


>gi|167894791|ref|ZP_02482193.1| transcription-repair coupling factor [Burkholderia pseudomallei
           7894]
          Length = 649

 Score =  363 bits (931), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 231/473 (48%), Gaps = 19/473 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R         A ++  L  R+  ++       ++ +   K   +  F  T  Q 
Sbjct: 44  QWERAKRRAAQQIRDTAAELLNLYARRAAREG--HAFGLDPRDYVKFADSFGFEETPDQA 101

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 102 AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHT 161

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +       +  + +  ++          A+ +I  G   I+IGTH L    +Q+ +L LV
Sbjct: 162 QTFADRFADWPVRIAELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLV 221

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 222 IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 281

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           KT +        + E +   L  G + Y++  ++E  +     +       L     + I
Sbjct: 282 KTFV-RREEESVIREAMLRELKRGGQVYFLHNEVETIE-----NRKAMLEELVPE--ARI 333

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 334 VIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQ 393

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
           LRGRVGR    +   LL H P  L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 394 LRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEV 453

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
           LG KQSG    +  Q  L+  +L  A K  K+   ++PDLT+    +  I L+
Sbjct: 454 LGDKQSGEIHEIGFQ--LYTEMLNDAVKALKN--GKEPDLTAPLAATTEINLH 502


>gi|329767249|ref|ZP_08258776.1| transcription-repair coupling factor [Gemella haemolysans M341]
 gi|328836916|gb|EGF86563.1| transcription-repair coupling factor [Gemella haemolysans M341]
          Length = 1183

 Score =  363 bits (931), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 146/466 (31%), Positives = 245/466 (52%), Gaps = 21/466 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W           E ++  +  L ++++     G   +++G +  +   +  ++PT  Q  
Sbjct: 556  WQKTKSRVRKEIEDISEDLIKLYIKREL--SSGYAYSLDGSMQSEFEADFAYTPTDDQVK 613

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            A ++I +DM ++  M R+L GDVG GKT VA+     AV    Q  ++ P  +LA+QHY+
Sbjct: 614  ATEEIKRDMEKQRPMDRLLCGDVGFGKTEVAMRVAFKAVTDNKQVAVLVPTTLLAEQHYD 673

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                   N  + +E+++         +  +++  G+  II+GTH L  D  +Y  L L+I
Sbjct: 674  NFVSRFANFPVNIEVVSRFKSAKDITEICKKLEEGKIDIIVGTHKLLNDKFKYKDLGLLI 733

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  D+S I   P  R+PI+
Sbjct: 734  IDEEQRFGVKHKEKIKHLKNTVDVLTLSATPIPRTLHMSLIGIRDLSVIETPPRERQPIQ 793

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T +   N++  + E +   ++ G + +++  ++E           E++  L       +I
Sbjct: 794  TFVTAQNKM-VIKEAVMNEINRGGQVFYVYNRVETID--------EKYLELKRLLPDINI 844

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HGRMS  + E++M    +    +LI+TT+IE GID+ + + +I+E+A+ FGL+QL+Q
Sbjct: 845  AYAHGRMSQRELENIMSDVIDRKYDMLISTTIIETGIDISNVNTLIVEDADRFGLSQLYQ 904

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L+Y P   L++NS  RLS +KN      GF IA +DL  R  G++
Sbjct: 905  LRGRVGRSSREAYAYLMYEPFKSLTENSEKRLSAIKNFTSLGSGFKIAMQDLSIRGAGDV 964

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
            LG +Q G          L+  +LE   ++ K IL  +P L   R Q
Sbjct: 965  LGGRQHGFID--SVGYTLYSQMLEQEIQEKKGIL--EPLLEQDRTQ 1006


>gi|315660330|ref|ZP_07913183.1| transcription-repair coupling factor [Staphylococcus lugdunensis
            M23590]
 gi|315494619|gb|EFU82961.1| transcription-repair coupling factor [Staphylococcus lugdunensis
            M23590]
          Length = 1173

 Score =  363 bits (931), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 157/464 (33%), Positives = 240/464 (51%), Gaps = 17/464 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +  +G     +    Q    + P+  T  Q 
Sbjct: 568  EWKKTKAKVQQSVEDIAEELIALY--KEREMSVGYQFGEDTAEQQAFELDFPYELTPDQA 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I  DM  +  M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 626  KSIEEIKADMELQKPMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        RK  E +  G   I++GTH L    I+Y  L L+
Sbjct: 686  ETLIERMQDFPVEIQLVSRFRTAKEVRKTKEGLKSGYVDIVVGTHKLLSKDIRYKDLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++    T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 746  IVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     +SI
Sbjct: 806  QTYVLEQN-TNFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPE--ASI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF NG   +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+Q
Sbjct: 858  AVAHGQMTERDLEETMLSFINGDYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            LG +Q G    +     L+  +LE A  + + I  + PD   V 
Sbjct: 978  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGITEETPDTPEVE 1019


>gi|94987637|ref|YP_595738.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS9429]
 gi|94991503|ref|YP_599602.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS2096]
 gi|94541145|gb|ABF31194.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS9429]
 gi|94545011|gb|ABF35058.1| Transcription-repair coupling factor [Streptococcus pyogenes
           MGAS2096]
          Length = 1167

 Score =  363 bits (931), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 152/452 (33%), Positives = 237/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  ++ G   + +  + +    +  F  
Sbjct: 555 KLNDGRFQKTKQKVARQVEDIADDLLKLYA--ERSQQKGFSFSPDDDLQRAFDDDFAFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  K   +N  + V++++    +  + + LER+  GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYENFKARFENYPVEVDVLSRFRSKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++  +        ++ + L E 
Sbjct: 793 NRYPVQTYVLE-NNPGLVREAIIREMDRGGQIFYVYNKVDTIE--------KKVSELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 993


>gi|306992463|gb|ADN19348.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  363 bits (931), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 168/454 (37%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 449


>gi|260772487|ref|ZP_05881403.1| transcription-repair coupling factor [Vibrio metschnikovii CIP
           69.14]
 gi|260611626|gb|EEX36829.1| transcription-repair coupling factor [Vibrio metschnikovii CIP
           69.14]
          Length = 978

 Score =  363 bits (931), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 149/473 (31%), Positives = 239/473 (50%), Gaps = 19/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++       +A ++  +  +++ K   G    ++           PF  T  Q  
Sbjct: 378 WVKARKKAAEKVRDVAAELLDVYAKRELK--PGYRFRLDRDQYATFKATFPFEETDDQAM 435

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A     +   Q  I+ P  +LAQQH+E
Sbjct: 436 AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVCTDNNKQVAILVPTTLLAQQHFE 495

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  I VE+++       +++ ++ +A G+  I++GTH L    + +  L L+I
Sbjct: 496 NFRDRFANLPIRVEVLSRFKSAKEQKQIMQDVAEGKVDIVVGTHKLLSSDLIFADLGLLI 555

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 556 VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 615

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +        V E +   +  G + Y++  Q+E  ++     V     +L     + + 
Sbjct: 616 TFVRQHED-SVVRESVLREIMRGGQVYFLHNQVESIEK-----VAADLEALIPE--ARVT 667

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG++ + + E +M+ F +    +L+ TT+IE GIDV  A+ III  A+  GLAQLHQL
Sbjct: 668 VAHGQLRERELEQIMNDFYHQRYNVLVCTTIIETGIDVPTANTIIINRADTLGLAQLHQL 727

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL   P  ++K++  RL  + + ED   GF +A  DL+ R  GE+L
Sbjct: 728 RGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 787

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           G +QSG  + +     L+  +LE A +  K    ++P L  +  +   + L +
Sbjct: 788 GDEQSGQIQSIGFS--LYMEMLEQAVEALKS--GKEPSLDDLLREQSEVELRI 836


>gi|308179637|ref|YP_003923765.1| transcription-repair coupling factor [Lactobacillus plantarum subsp.
            plantarum ST-III]
 gi|308045128|gb|ADN97671.1| transcription-repair coupling factor [Lactobacillus plantarum subsp.
            plantarum ST-III]
          Length = 1175

 Score =  363 bits (931), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 136/446 (30%), Positives = 227/446 (50%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  A  E +A ++  L  +++ +   G     +         + P+  T  Q 
Sbjct: 568  EWTKAKRKVAAKIEDIADELVDLYAKREAE--KGYAFPPDDSYQDDFDNDFPYPETPDQI 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VAL A   A+EAG Q   + P  ILAQQHY
Sbjct: 626  RSINEIKHDMERPKPMDRLLVGDVGYGKTEVALRAAFKAIEAGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +    +   I V +++        ++ ++++  G+  I++GTH L    + +  L L+
Sbjct: 686  ETMLNRFEGYPINVGMLSRFRTTKEMKETVQQLKSGEIDIVVGTHRLLSKDVAFADLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L     +  VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746  IIDEEQRFGVKHKERLKALKASVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPI 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  +    + +++  ++      +   VV +   L     +++
Sbjct: 806  QTYVMEQN-FGVIKEGIEREMQRNGQVFYLHNRV-----HDIDKVVAQIKDLVPD--AAV 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A I G+M +   E ++  F  G   +L+ TT+IE G+D+ + + + +ENA+  GL+QL+Q
Sbjct: 858  AHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVNTLFVENADRMGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++     Y  +  L++    RL  +K+      GF IA  DL  R  G +
Sbjct: 918  LRGRIGRSSRVAYAYFTYQQNKVLTEVGEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G    +     L+  +L  A
Sbjct: 978  LGKQQHGFIDSVGYD--LYTQMLSEA 1001


>gi|260663740|ref|ZP_05864628.1| transcription-repair coupling factor [Lactobacillus fermentum
            28-3-CHN]
 gi|260551791|gb|EEX24907.1| transcription-repair coupling factor [Lactobacillus fermentum
            28-3-CHN]
          Length = 1180

 Score =  363 bits (931), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 136/447 (30%), Positives = 231/447 (51%), Gaps = 17/447 (3%)

Query: 218  FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
             EW    R   A  E +A  +  L  +++ +   G     +  + +K     P++ TK Q
Sbjct: 567  VEWAKTKRRVAAKIEDIADDLVDLYAKRETE--KGFAFPKDDYLQEKFDDEFPYAETKDQ 624

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              +I++I  DM +   M R+L GDVG GKT VAL A+  AV  G Q   + P  ILAQQH
Sbjct: 625  LQSIQEIKADMERPRPMDRLLVGDVGYGKTEVALRAIFKAVAGGKQVAFLVPTTILAQQH 684

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y+ +K   +   + + +++        ++    + +G+  I++GTH +    +Q+  L L
Sbjct: 685  YDTMKARFEGFPVTIALMSRFKTAKELKETDRGLLNGEIDIVVGTHRILSKDVQFKDLGL 744

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P GR P
Sbjct: 745  LIVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMMGVRDLSVLETPPTGRYP 804

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            I+T ++  N    + + +   +  G + Y++  ++      +   VV +   L     + 
Sbjct: 805  IQTYVLEQNG-AVIRDGILREMQRGGQVYYLHNRV-----HDIERVVAQLAELVPE--AR 856

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I  IHG+MS+ + E V+  F  G   +L+ T++IE G+D+ + + + +E+A+  GLAQL+
Sbjct: 857  IGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANVNTLFVEDADRLGLAQLY 916

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            Q+RGR+GR   ++    +Y     L++    RL+ +++      GF IA  DL  R  G 
Sbjct: 917  QIRGRIGRSNRVAYAYFMYQENKVLTEQGEKRLAAIRDFTELGSGFKIAMRDLSIRGAGN 976

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +LG +Q G    +     L+  +L  A
Sbjct: 977  LLGKQQHGFIDSVGYD--LYTEMLADA 1001


>gi|291482427|dbj|BAI83502.1| transcription-repair coupling factor [Bacillus subtilis subsp. natto
            BEST195]
          Length = 1177

 Score =  362 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 139/449 (30%), Positives = 238/449 (53%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++     + +A  +  L   ++     G   + + ++ ++     P+  T+ Q 
Sbjct: 572  EWKRVKKKVETSVQDIADDLIKLYAEREA--SKGYAFSPDHEMQREFESAFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  ILAQQHY
Sbjct: 630  RSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E IK+  Q+  I + +++    +    + ++ + +G   I+IGTH L    + Y  L L+
Sbjct: 690  ETIKERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKDVVYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYNG-ALVREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--AKV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++ + E+VM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  AYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +Q G    +     L+  +L+ A ++
Sbjct: 982  LGAQQHGFIDSVGFD--LYSQMLKEAIEE 1008


>gi|54309559|ref|YP_130579.1| putative transcription-repair coupling factor [Photobacterium
            profundum SS9]
 gi|46913995|emb|CAG20777.1| putative transcription-repair coupling factor [Photobacterium
            profundum SS9]
          Length = 1151

 Score =  362 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 148/473 (31%), Positives = 241/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++       +A ++  +  +++ K   G    ++ +         PF  T  Q  
Sbjct: 554  WVKARKKAAEKVRDVAAELLDVYAKRELK--PGFKFTLDRESYADFCSGFPFEETHDQAL 611

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L DM +   M R++ GDVG GKT VA+ A   A++   Q  ++ P  +LAQQH+E
Sbjct: 612  AINSVLSDMCKPRAMDRLVCGDVGFGKTEVAMRAAFVAIDNNKQVTVLVPTTLLAQQHFE 671

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    NT + VE+++       +++ +     G+  I+IGTH L   S++Y+ L L++
Sbjct: 672  NFRDRFANTAVRVEVLSRFKTAKEQKQIMLDAEEGKIDILIGTHKLLNASVKYHDLGLLV 731

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R  IK
Sbjct: 732  VDEEHRFGVRQKEKIKAIRADIDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 791

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   +  G + Y++  +++  +++      E    L     + I 
Sbjct: 792  TFVREKDD-AIIREAVLREIMRGGQVYFLHNEVDSIEKTT-----EELAKLIPE--ARIT 843

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              HG+M + D E VM  F +    LL+ TT+IE GID+  A+ II+  A++ GLAQLHQL
Sbjct: 844  FAHGQMRERDLEKVMGDFYHQRFNLLVCTTIIETGIDIPTANTIIMNRADNLGLAQLHQL 903

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      ++K++  RL  +++ ED   GF +A  DL+ R  GE+L
Sbjct: 904  RGRVGRSHHQAYAYLLTPHKKRMTKDAVKRLEAIESLEDLGAGFTLATHDLEIRGAGELL 963

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L   +LE A +  K    ++  L  +  +   + L L
Sbjct: 964  GDEQSGQIQSIGFS--LFMEMLEQAVEALKE--GKESSLDDLLRKQTEVELRL 1012


>gi|321313725|ref|YP_004206012.1| transcription-repair coupling factor [Bacillus subtilis BSn5]
 gi|320019999|gb|ADV94985.1| transcription-repair coupling factor [Bacillus subtilis BSn5]
          Length = 1177

 Score =  362 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 139/449 (30%), Positives = 238/449 (53%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++     + +A  +  L   ++     G   + + ++ ++     P+  T+ Q 
Sbjct: 572  EWKRVKKKVETSVQDIADDLIKLYAEREA--SKGYAFSPDHEMQREFESAFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  ILAQQHY
Sbjct: 630  RSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E IK+  Q+  I + +++    +    + ++ + +G   I+IGTH L    + Y  L L+
Sbjct: 690  ETIKERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKDVVYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYNG-ALVREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--AKV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++ + E+VM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  AYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +Q G    +     L+  +L+ A ++
Sbjct: 982  LGAQQHGFIDSVGFD--LYSQMLKEAIEE 1008


>gi|306992465|gb|ADN19349.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  362 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 168/454 (37%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 449


>gi|16077123|ref|NP_387936.1| transcription-repair coupling factor [Bacillus subtilis subsp.
            subtilis str. 168]
 gi|221307865|ref|ZP_03589712.1| transcription-repair coupling factor [Bacillus subtilis subsp.
            subtilis str. 168]
 gi|221312187|ref|ZP_03593992.1| transcription-repair coupling factor [Bacillus subtilis subsp.
            subtilis str. NCIB 3610]
 gi|221317120|ref|ZP_03598414.1| transcription-repair coupling factor [Bacillus subtilis subsp.
            subtilis str. JH642]
 gi|221321383|ref|ZP_03602677.1| transcription-repair coupling factor [Bacillus subtilis subsp.
            subtilis str. SMY]
 gi|585481|sp|P37474|MFD_BACSU RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|467444|dbj|BAA05290.1| transcription-repair coupling factor [Bacillus subtilis]
 gi|2632322|emb|CAB11831.1| transcription-repair coupling factor [Bacillus subtilis subsp.
            subtilis str. 168]
          Length = 1177

 Score =  362 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 139/449 (30%), Positives = 238/449 (53%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++     + +A  +  L   ++     G   + + ++ ++     P+  T+ Q 
Sbjct: 572  EWKRVKKKVETSVQDIADDLIKLYAEREA--SKGYAFSPDHEMQREFESAFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  ILAQQHY
Sbjct: 630  RSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E IK+  Q+  I + +++    +    + ++ + +G   I+IGTH L    + Y  L L+
Sbjct: 690  ETIKERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKDVVYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYNG-ALVREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--AKV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++ + E+VM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  AYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +Q G    +     L+  +L+ A ++
Sbjct: 982  LGAQQHGFIDSVGFD--LYSQMLKEAIEE 1008


>gi|149182807|ref|ZP_01861269.1| transcription-repair coupling factor [Bacillus sp. SG-1]
 gi|148849474|gb|EDL63662.1| transcription-repair coupling factor [Bacillus sp. SG-1]
          Length = 1177

 Score =  362 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 141/449 (31%), Positives = 241/449 (53%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +  +  + +A  +  L   ++     G   + +G + ++   + P+  T+ Q 
Sbjct: 572  EWKKVKNKVESSVQDIADDLIKLYAEREA--SKGYAFSPDGDMQREFETSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM ++  M R+L GDVG GKT VA+ A   AV  G Q  ++ P  ILAQQHY
Sbjct: 630  RSIDEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAVVDGKQVALLVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K+  Q+  + V +++    +  + + ++ I  G   +++GTH +    IQY  L L+
Sbjct: 690  ETMKERFQDFGLEVGLLSRFRTKKQQTETIKGIKAGTVDVVVGTHRILSKDIQYRDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKTNIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E ++  L+   + Y++  ++E+ +        E  + L     + +
Sbjct: 810  QTYVMEYNGV-MMKEAIERELARDGQVYFLYNRVEDIE-----RKAEEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++ + ESV+ SF +G   +L+ TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  AFAHGKMNETELESVILSFLDGEFDVLVTTTIIETGVDIPNVNTLIVYDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL  R  G I
Sbjct: 922  LRGRVGRSNRVAYSYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNI 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +Q G    +     L+  +L+ A ++
Sbjct: 982  LGAQQHGFIDSVGFD--LYSQMLKEAIEE 1008


>gi|299782816|gb|ADJ40814.1| Transcription-repair coupling factor [Lactobacillus fermentum CECT
           5716]
          Length = 1113

 Score =  362 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 136/447 (30%), Positives = 231/447 (51%), Gaps = 17/447 (3%)

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EW    R   A  E +A  +  L  +++ +   G     +  + +K     P++ TK Q
Sbjct: 500 VEWAKTKRRVAAKIEDIADDLVDLYAKRETE--KGFAFPKDDYLQEKFDDEFPYAETKDQ 557

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +I++I  DM +   M R+L GDVG GKT VAL A+  AV  G Q   + P  ILAQQH
Sbjct: 558 LQSIQEIKADMERPRPMDRLLVGDVGYGKTEVALRAIFKAVAGGKQVAFLVPTTILAQQH 617

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+ +K   +   + + +++        ++    + +G+  I++GTH +    +Q+  L L
Sbjct: 618 YDTMKARFEGFPVTIALMSRFKTAKELKETDRGLLNGEIDIVVGTHRILSKDVQFKDLGL 677

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P GR P
Sbjct: 678 LIVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMMGVRDLSVLETPPTGRYP 737

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           I+T ++  N    + + +   +  G + Y++  ++      +   VV +   L     + 
Sbjct: 738 IQTYVLEQNG-AVIRDGILREMQRGGQVYYLHNRV-----HDIERVVAQLAELVPE--AR 789

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  IHG+MS+ + E V+  F  G   +L+ T++IE G+D+ + + + +E+A+  GLAQL+
Sbjct: 790 IGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANVNTLFVEDADRLGLAQLY 849

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           Q+RGR+GR   ++    +Y     L++    RL+ +++      GF IA  DL  R  G 
Sbjct: 850 QIRGRIGRSNRVAYAYFMYQENKVLTEQGEKRLAAIRDFTELGSGFKIAMRDLSIRGAGN 909

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIA 659
           +LG +Q G    +     L+  +L  A
Sbjct: 910 LLGKQQHGFIDSVGYD--LYTEMLADA 934


>gi|269102431|ref|ZP_06155128.1| transcription-repair coupling factor [Photobacterium damselae subsp.
            damselae CIP 102761]
 gi|268162329|gb|EEZ40825.1| transcription-repair coupling factor [Photobacterium damselae subsp.
            damselae CIP 102761]
          Length = 1153

 Score =  362 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 151/456 (33%), Positives = 237/456 (51%), Gaps = 19/456 (4%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  +  +++ K   G    ++ +         PF  T  Q  AI  +L DM Q   M R
Sbjct: 574  ELLDVYAKRELK--PGFKFKLDREAYADFCTGFPFEETHDQALAINMVLSDMCQTKVMDR 631

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQH+E  +    NT I VE+++
Sbjct: 632  LVCGDVGFGKTEVAMRAAFVAVDNNKQVTVLVPTTLLAQQHFENFRDRFANTPIRVEVLS 691

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                   +++ L  +  G+  I+IGTH L   +++Y+ L L+IVDE+HRFGV+Q+ K+  
Sbjct: 692  RFKTAKEQKQILADVEEGKIDILIGTHKLLNSTVKYHDLGLLIVDEEHRFGVRQKEKIKA 751

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                  +L +TATPIPRTL +   G  D+S I   PA R  IKT +   +    V E + 
Sbjct: 752  IRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVREKDD-AIVREAIL 810

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              ++ G + Y++  +++  +       VE  + L     + I   HG+M + + E +M  
Sbjct: 811  REINRGGQVYFLHNEVDTIE-----KTVEDISKLVPE--ARITFAHGQMRERELERIMSD 863

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F +    +L+ TT+IE GIDV  A+ II++ A++ GLAQLHQLRGRVGR    +   LL 
Sbjct: 864  FYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLT 923

Query: 597  HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
              P  ++K++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG          L
Sbjct: 924  PHPKRMTKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSGQI--QSVGFTL 981

Query: 652  HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
               +LE A    K    ++P L  +  +   + L +
Sbjct: 982  FMEMLEQAVDALKE--GKEPSLDDLLKEQTEVELRM 1015


>gi|306992225|gb|ADN19229.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992227|gb|ADN19230.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992229|gb|ADN19231.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992231|gb|ADN19232.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992233|gb|ADN19233.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  362 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 169/454 (37%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LTQK 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 449


>gi|227514331|ref|ZP_03944380.1| transcription-repair coupling factor [Lactobacillus fermentum ATCC
            14931]
 gi|227087303|gb|EEI22615.1| transcription-repair coupling factor [Lactobacillus fermentum ATCC
            14931]
          Length = 1180

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 136/447 (30%), Positives = 231/447 (51%), Gaps = 17/447 (3%)

Query: 218  FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
             EW    R   A  E +A  +  L  +++ +   G     +  + +K     P++ TK Q
Sbjct: 567  VEWAKTKRRVAAKIEDIADDLVDLYAKRETE--KGFAFPKDDYLQEKFDDEFPYAETKDQ 624

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              +I++I  DM +   M R+L GDVG GKT VAL A+  AV  G Q   + P  ILAQQH
Sbjct: 625  LQSIQEIKADMERPRPMDRLLVGDVGYGKTEVALRAIFKAVAGGKQVAFLVPTTILAQQH 684

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y+ +K   +   + + +++        ++    + +G+  I++GTH +    +Q+  L L
Sbjct: 685  YDTMKARFEGFPVTIALMSRFKTAKELKETDRGLLNGEIDIVVGTHRILSKDVQFKDLGL 744

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P GR P
Sbjct: 745  LIVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMMGVRDLSVLETPPTGRYP 804

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            I+T ++  N    + + +   +  G + Y++  ++      +   VV +   L     + 
Sbjct: 805  IQTYVLEQNG-AVIRDGILREMQRGGQVYYLHNRV-----HDIERVVAQLAELVPE--AR 856

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I  IHG+MS+ + E V+  F  G   +L+ T++IE G+D+ + + + +E+A+  GLAQL+
Sbjct: 857  IGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANVNTLFVEDADRLGLAQLY 916

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            Q+RGR+GR   ++    +Y     L++    RL+ +++      GF IA  DL  R  G 
Sbjct: 917  QIRGRIGRSNRVAYAYFMYQENKVLTEQGEKRLAAIRDFTELGSGFKIAMRDLSIRGAGN 976

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +LG +Q G    +     L+  +L  A
Sbjct: 977  LLGKQQHGFIDSVGYD--LYTEMLADA 1001


>gi|331268338|ref|YP_004394830.1| transcription-repair coupling factor [Clostridium botulinum
            BKT015925]
 gi|329124888|gb|AEB74833.1| transcription-repair coupling factor [Clostridium botulinum
            BKT015925]
          Length = 1169

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 143/447 (31%), Positives = 224/447 (50%), Gaps = 22/447 (4%)

Query: 232  ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            E+    + L  +R   K       N +    ++     P+  T  Q +AI++I  DM   
Sbjct: 587  EIAEELVKLYAIRSTLKGH---KFNKDTIWQKQFEEEFPYDETPDQLTAIQEIKADMESG 643

Query: 292  NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
              M R+L GDVG GKT VA+ A   AV  G Q   + P  ILA+QHY  + +   +  I 
Sbjct: 644  KAMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAEQHYTNLVQRFCDFPIN 703

Query: 352  VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
            +E+I+     A  +  L  +  G   ++IGTH + Q  + +  L L+IVDE+ RFGV  +
Sbjct: 704  IEMISRFKTSAQVKNILNEVKLGNVDVLIGTHRILQKDVAFKDLGLLIVDEEQRFGVTHK 763

Query: 412  LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             K+        VL +TATPIPRTL ++  G  DIS I   P  R P++T ++  N  D++
Sbjct: 764  EKIKNLKKNVDVLTLTATPIPRTLHMSLTGIRDISVIETPPEERYPVQTYVVEFN--DQL 821

Query: 472  IER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDID 529
            IE  +   L    + Y++  ++   K        E    L + F  S + I HG+M + +
Sbjct: 822  IEDAIARELDRDGQVYFVYNRVGSIK--------EMAAYLAKMFPDSKVGIAHGQMPERE 873

Query: 530  KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
             E VM  F      +L+ TT+IE G+D+ +A+ +II +++ FGL+QL+QLRGRVGR   +
Sbjct: 874  LEKVMYDFMKKEYDILVCTTIIETGLDIQNANTMIIYDSDKFGLSQLYQLRGRVGRTNRM 933

Query: 590  SSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
            +   L Y     L++ +  RL  +K+      GF IA  DL+ R  G ++G  Q G    
Sbjct: 934  AYAYLTYKKDKVLTEVAEKRLKAIKDFTELGSGFKIAMRDLEIRGAGNLIGAAQHGHMAS 993

Query: 645  LIAQPELHDSLLEIARKDAKHILTQDP 671
            +     L+  +LE   K  +  + ++P
Sbjct: 994  VGYD--LYCRMLEDTIKLVRGEIDKEP 1018


>gi|306992239|gb|ADN19236.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992241|gb|ADN19237.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 451

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 169/455 (37%), Positives = 267/455 (58%), Gaps = 8/455 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LTQK
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 450


>gi|306992219|gb|ADN19226.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992221|gb|ADN19227.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992223|gb|ADN19228.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 169/454 (37%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LTQK 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 449


>gi|327471614|gb|EGF17057.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK408]
          Length = 1167

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 146/452 (32%), Positives = 237/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     + +A  +  L    +  +      + +    ++   + P+  
Sbjct: 559 KLNDGRFQKSKQKVQHQVQDIADDLIKLYA--ERSQLKCFAFSADDSNQEEFDNDFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I+++ +DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 617 TEDQLRSIQEVKKDMESSRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  + VE+++    +A +++ LE++  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHYTNFKERFNDFAVNVEVLSRFRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIIIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 797 NRYPVQTYVLESNPT-VIREAVLREIDRGGQVYYLYNKVDTIE--------QKVSELREL 847

Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H G
Sbjct: 848 IPEVSIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGSMQSGFID--SVGFEMYSQLLEEA 997


>gi|255318947|ref|ZP_05360172.1| transcription-repair coupling factor [Acinetobacter radioresistens
            SK82]
 gi|262378317|ref|ZP_06071474.1| transcription-repair coupling factor [Acinetobacter radioresistens
            SH164]
 gi|255303964|gb|EET83156.1| transcription-repair coupling factor [Acinetobacter radioresistens
            SK82]
 gi|262299602|gb|EEY87514.1| transcription-repair coupling factor [Acinetobacter radioresistens
            SH164]
          Length = 1153

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 150/473 (31%), Positives = 244/473 (51%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+ L     +A ++  +  R+  K   G    ++  +  +      +  T  Q +
Sbjct: 555  WNKAKRKALEQIHDVAAELLHIQARRHAK--PGFAFEIDQSLYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM +   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHYE
Sbjct: 613  AIEATLYDMQKAEPMDRLVCGDVGFGKTEVAMRAAFVAVQNNKQVAVLVPTTLLAQQHYE 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  + +E+++         K ++ +A G+  I+IGTH L Q+++Q+  L L+I
Sbjct: 673  SFKDRFADWPVRIEVLSRFGSNKAHVKNIQDLADGKVDIVIGTHKLLQENVQFKDLGLMI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +    + E +   L  G + Y++  +++  +        E   +L     + +A
Sbjct: 793  TFV-QEHTDASIKEAILRELLRGGQVYFLHNEVDSIE-----RTAENIRALVPE--ARVA 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ IIIE A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEQVMQQFYHKQYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L  ++  RL  ++   N   GF++A EDL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLLVPSIKALKGDAEKRLDAIQRASNLGAGFMLATEDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 965  GEQQSGSMQAIGYS--LYMEMLEKATKAIQQ--GKTPNFDAPLSLTAEINLHM 1013


>gi|327467732|gb|EGF13226.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK330]
          Length = 1167

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 147/452 (32%), Positives = 239/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     + +A  +  L    +  +  G   + +    ++   + P+  
Sbjct: 559 KLNDGRFQKSKQKVQHQVQDIADDLIKLYA--ERSQLKGFAFSTDDSNQEEFDNDFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I+++ +DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 617 TEDQLRSIQEVKKDMESSRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  + VE+++    +A +++ LE++  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHYTNFKERFNDFAVNVEVLSRFRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIIIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 797 NRYPVQTYVLESNPT-VIREAVLREIDRGGQVYYLYNKVDTIE--------QKVSELREL 847

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H G
Sbjct: 848 IPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGSMQSGFID--SVGFEMYSQLLEEA 997


>gi|332971077|gb|EGK10047.1| transcription-repair coupling factor [Desmospora sp. 8437]
          Length = 1181

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 138/449 (30%), Positives = 240/449 (53%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW+    +  +  + +A  +  L  ++Q ++      + +    ++     P+  T  Q 
Sbjct: 572  EWSKVKNKVRSSVQDIASDLIKLYAKRQSERG--HAFSPDTPYQREFDALFPYEETADQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A   G Q  ++ P  ILAQQH+
Sbjct: 630  RSIEEIKKDMEKTQPMDRLLCGDVGYGKTEVAIRAAFKATMDGKQVAVLVPTTILAQQHF 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  ++   +  + + +++    +  +R+ ++ +  G   I+IGTH +    +Q+  L L+
Sbjct: 690  ETFRERFSDFPVEIRVLSRFRSRKEQRETIQGVNDGTVDIVIGTHRILSKDVQFKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + K+ +  +   VL +TATPIPRTL ++ +G  D+S I   P  R P+
Sbjct: 750  IVDEEQRFGVKHKEKIKKIKSNIDVLTLTATPIPRTLHMSMMGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  +    V E ++  ++ G + Y++  Q++     N   + E+   L     + I
Sbjct: 810  QTYVLEYS-AALVREAIEREMARGGQVYFLYNQVQ-----NIDKMAEQIRMLVPD--ARI 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ + E VM  F +G   +L++TT+IE G+D+ + + +II NA+  GL+QL+Q
Sbjct: 862  AVAHGQMAETELEKVMLDFLDGETDVLVSTTIIETGVDIPNVNTLIIYNADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+     Y  +  LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRIAYAYFTYQRNKVLSETAEKRLQAIKEFTELGSGFKIAMRDLAIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +Q G         E++  +L+ A +D
Sbjct: 982  LGAEQHGHIAT--VGFEMYTQMLKEAIQD 1008


>gi|315924903|ref|ZP_07921120.1| transcription-repair coupling factor [Pseudoramibacter alactolyticus
            ATCC 23263]
 gi|315621802|gb|EFV01766.1| transcription-repair coupling factor [Pseudoramibacter alactolyticus
            ATCC 23263]
          Length = 1144

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 155/559 (27%), Positives = 263/559 (47%), Gaps = 40/559 (7%)

Query: 142  HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL---LQKKS 198
             Y+ H+       + + +  +  G +      I  +   RL     ++  D    +Q   
Sbjct: 479  DYVVHDIH--GIGVYQGIEKMTIGETTKDMIVIAYQGDDRL-----YLPVDQMGSIQAYI 531

Query: 199  FP--SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
                      N +  P      +W           E +A ++  L   ++ +   G    
Sbjct: 532  GTGGDRKPKVNTLGRP------DWAKTKARAKKAVEDMADELIALYAARRSR--PGYAFG 583

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             +    ++     P+  T  Q   I++I  DM +   M R+L GDVG GKT VAL A   
Sbjct: 584  KDTSWQREFEDAFPYEETDDQLRCIEEIKADMEKPVPMDRLLCGDVGYGKTEVALRAAFK 643

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AV    Q  ++ P  ILAQQHYE ++       I VE+++       ++  L  +A G+ 
Sbjct: 644  AVMDSKQVALLVPTTILAQQHYETMRSRFARYPITVEVMSRFRTPKEQKAVLADLAAGRV 703

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             +++GTH L    +++  L L+IVDE+ RFGV+ + KL        VL ++ATPIPRTL 
Sbjct: 704  DVVVGTHRLLSKDMRFKDLGLLIVDEEQRFGVRAKEKLKSLRENVDVLTLSATPIPRTLH 763

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++  G  D+S I E PAGR+P++T ++  N +  V + +   +  G + Y++   I    
Sbjct: 764  MSMTGIRDMSVIAEPPAGRRPVRTYVMRDNAV-VVGDAIAREIRRGGQVYFVHNCI---- 818

Query: 497  ESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                + + ER + +      + +   HG+M     E +M +F +    +L+ T ++E G+
Sbjct: 819  ----KDLNERADQVRRMVPGARVVTAHGQMPGEALERIMQAFVDKAYDVLVTTAIVESGL 874

Query: 556  DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH-PPLSKNSYTRLSVLKNT 614
            DV +A+ +++++ +  GL+QL+QLRGRVGR    + C +LY    LS  +  RL  +K+ 
Sbjct: 875  DVRNANTMVVDDGDAMGLSQLYQLRGRVGRSSNQAFCYILYKRRALSDVAQKRLKAIKDF 934

Query: 615  E---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
                 GF +A  DL+ R  G ILG +QSG         E++  +LE     A+H   Q P
Sbjct: 935  TAFGSGFKVAMRDLEIRGAGNILGAEQSGH--LFSIGYEMYCRILEE--TIAEH-TGQLP 989

Query: 672  DLTSVRGQSIRILLYLYQY 690
            +  + + + ++I L L  Y
Sbjct: 990  EAAAGK-EPVKINLELDAY 1007


>gi|306992245|gb|ADN19239.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 170/454 (37%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLMKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LTQK
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|241890049|ref|ZP_04777347.1| transcription-repair coupling factor [Gemella haemolysans ATCC 10379]
 gi|241863671|gb|EER68055.1| transcription-repair coupling factor [Gemella haemolysans ATCC 10379]
          Length = 1183

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 148/466 (31%), Positives = 245/466 (52%), Gaps = 21/466 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W           E ++  +  L ++++     G   +++G +  +   +  F+PT+ Q  
Sbjct: 556  WQKTKSRVRKEIEDISEDLIKLYIKREL--SSGYAYSIDGSLQAEFEADFSFTPTEDQVK 613

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            A ++I +DM ++  M R+L GDVG GKT VA+     AV    Q  ++ P  +LA+QHY+
Sbjct: 614  ATEEIKRDMEKERPMDRLLCGDVGFGKTEVAMRVAFKAVTDNKQVAVLVPTTLLAEQHYD 673

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                   N  I +E+++         +  +++  G+  II+GTH L  D  +Y  L L+I
Sbjct: 674  NFVNRFANFPINIEVVSRFKSAKDITEICKKLEEGKIDIIVGTHKLLNDKFKYKDLGLLI 733

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  D+S I   P  R+PI+
Sbjct: 734  IDEEQRFGVKHKEKIKHLKNTVDVLTLSATPIPRTLHMSLIGIRDLSVIETPPRERQPIQ 793

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T +   N++  + E +   ++ G + +++  ++E           E++  L       +I
Sbjct: 794  TFVTAQNKM-VIKEAVMNEVNRGGQVFYVYNRVETID--------EKYLELKRLLPDINI 844

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HGRMS  + E++M    +    +LI+TT+IE GID+ + + +I+E+A+ FGL+QL+Q
Sbjct: 845  AYAHGRMSQRELENIMTDVIDRKYDMLISTTIIETGIDISNVNTLIVEDADRFGLSQLYQ 904

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L+Y P   L++NS  RLS +KN      GF IA +DL  R  G++
Sbjct: 905  LRGRVGRSSREAYAYLMYEPFKSLTENSEKRLSAIKNFTSLGSGFKIAMQDLSIRGAGDV 964

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
            LG +Q G          L+  +LE   +  K IL  +P L   R Q
Sbjct: 965  LGGRQHGFID--SVGYTLYSQMLEQEIQAKKGIL--EPLLEQDRTQ 1006


>gi|312796442|ref|YP_004029364.1| transcription-repair coupling factor [Burkholderia rhizoxinica HKI
            454]
 gi|312168217|emb|CBW75220.1| Transcription-repair coupling factor [Burkholderia rhizoxinica HKI
            454]
          Length = 1165

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 153/474 (32%), Positives = 234/474 (49%), Gaps = 19/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++     ++    +  +   +  F  T  Q 
Sbjct: 563  QWEKAKRRAAQQIRDTAAELLNLYARRAARQGHAFALDPRDYV--RFAESFGFDETPDQA 620

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  +++P  +LA+QH 
Sbjct: 621  AAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLSPTTLLAEQHV 680

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + +  ++          A++ I  G   I+IGTH L    +++ +L LV
Sbjct: 681  QTFTDRFADWPVRIAELSRFKSTKEVNAAIQAINDGNVDIVIGTHKLLSADVRFKRLGLV 740

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 741  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 800

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E        S      +L     + I
Sbjct: 801  KTFV-RREEDSVIREAMLRELKRGGQVYFLHNEVESID-----SRRAALEALVPE--ARI 852

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + D E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQ
Sbjct: 853  AVAHGQMHERDLERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRADKFGLAQLHQ 912

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL + P  LS+ +  RL  ++  E+   GF +A  DL+ R  GE+
Sbjct: 913  LRGRVGRSHHQAYAYLLVNDPQSLSRQAQRRLEAIQQMEELGAGFYLAMHDLEIRGTGEV 972

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            LG KQSG  + +  Q  L+  +L  A +  K    ++PDL +    +  I L++
Sbjct: 973  LGEKQSGDIQEIGFQ--LYTDMLNDAVRALKD--GREPDLNAPLAATTEINLHM 1022


>gi|306992495|gb|ADN19364.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 168/454 (37%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 449


>gi|254555607|ref|YP_003062024.1| transcription-repair coupling factor [Lactobacillus plantarum JDM1]
 gi|254044534|gb|ACT61327.1| transcription-repair coupling factor [Lactobacillus plantarum JDM1]
          Length = 1175

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 136/446 (30%), Positives = 227/446 (50%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  A  E +A ++  L  +++ +   G     +         + P+  T  Q 
Sbjct: 568  EWTKAKRKVAAKIEDIADELVDLYAKREAE--KGYAFPPDDSYQDDFDNDFPYPETPDQI 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VAL A   A+EAG Q   + P  ILAQQHY
Sbjct: 626  RSINEIKHDMERPKPMDRLLVGDVGYGKTEVALRAAFKAIEAGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +    +   I V +++        ++ ++++  G+  I++GTH L    + +  L L+
Sbjct: 686  ETMLNRFEGYPINVGMLSRFRTTKEMKETVQQLKSGEIDIVVGTHRLLSKDVAFADLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L     +  VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746  IIDEEQRFGVKHKERLKALKASVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPI 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  +    + +++  ++      +   VV +   L     +++
Sbjct: 806  QTYVMEQN-FGVIKEGIEREMQRNGQVFYLHNRV-----HDIDKVVAQIKDLVPD--AAV 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A I G+M +   E ++  F  G   +L+ TT+IE G+D+ + + + +ENA+  GL+QL+Q
Sbjct: 858  AHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVNTLFVENADRMGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++     Y  +  L++    RL  +K+      GF IA  DL  R  G +
Sbjct: 918  LRGRIGRSSRVAYAYFTYQQNKVLTEVGEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G    +     L+  +L  A
Sbjct: 978  LGKQQHGFIDSVGYD--LYTQMLSEA 1001


>gi|306992489|gb|ADN19361.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 167/454 (36%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 449


>gi|184154691|ref|YP_001843031.1| transcription-repair coupling factor [Lactobacillus fermentum IFO
            3956]
 gi|183226035|dbj|BAG26551.1| transcription-repair coupling factor [Lactobacillus fermentum IFO
            3956]
          Length = 1180

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 136/447 (30%), Positives = 231/447 (51%), Gaps = 17/447 (3%)

Query: 218  FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
             EW    R   A  E +A  +  L  +++ +   G     +  + +K     P++ TK Q
Sbjct: 567  VEWAKTKRRVAAKIEDIADDLVDLYAKRETE--KGFAFPKDDYLQEKFDDEFPYAETKDQ 624

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              +I++I  DM +   M R+L GDVG GKT VAL A+  AV  G Q   + P  ILAQQH
Sbjct: 625  LQSIQEIKADMERPRPMDRLLVGDVGYGKTEVALRAIFKAVAGGKQVAFLVPTTILAQQH 684

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y+ +K   +   + + +++        ++    + +G+  I++GTH +    +Q+  L L
Sbjct: 685  YDTMKARFEGFPVTIALMSRFKTAKELKETDRGLLNGEIDIVVGTHRILSKDVQFKDLGL 744

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S +   P GR P
Sbjct: 745  LIVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMMGVRDLSVLETPPTGRYP 804

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            I+T ++  N    + + +   +  G + Y++  ++      +   VV +   L     + 
Sbjct: 805  IQTYVLEQNG-AVIRDGILREMQRGGQVYYLHNRV-----HDIERVVAQLAELVPE--AR 856

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I  IHG+MS+ + E V+  F  G   +L+ T++IE G+D+ + + + +E+A+  GLAQL+
Sbjct: 857  IGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANVNTLFVEDADRLGLAQLY 916

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            Q+RGR+GR   ++    +Y     L++    RL+ +++      GF IA  DL  R  G 
Sbjct: 917  QIRGRIGRSNRVAYAYFMYQENKVLTEQGEKRLAAIRDFTELGSGFKIAMRDLSIRGAGN 976

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +LG +Q G    +     L+  +L  A
Sbjct: 977  LLGKQQHGFIDSVGYD--LYTEMLADA 1001


>gi|300768957|ref|ZP_07078848.1| transcription-repair coupling factor [Lactobacillus plantarum subsp.
            plantarum ATCC 14917]
 gi|300493478|gb|EFK28655.1| transcription-repair coupling factor [Lactobacillus plantarum subsp.
            plantarum ATCC 14917]
          Length = 1175

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 136/446 (30%), Positives = 227/446 (50%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  A  E +A ++  L  +++ +   G     +         + P+  T  Q 
Sbjct: 568  EWTKAKRKVAAKIEDIADELVDLYAKREAE--KGYAFPPDDSYQDDFDNDFPYPETPDQI 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VAL A   A+EAG Q   + P  ILAQQHY
Sbjct: 626  RSINEIKHDMERPKPMDRLLVGDVGYGKTEVALRAAFKAIEAGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +    +   I V +++        ++ ++++  G+  I++GTH L    + +  L L+
Sbjct: 686  ETMLNRFEGYPINVGMLSRFRTTKEMKETVQQLKSGEIDIVVGTHRLLSKDVAFADLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L     +  VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746  IIDEEQRFGVKHKERLKALKASVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPI 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  +    + +++  ++      +   VV +   L     +++
Sbjct: 806  QTYVMEQN-FGVIKEGIEREMQRNGQVFYLHNRV-----HDIDKVVAQIKDLVPD--AAV 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A I G+M +   E ++  F  G   +L+ TT+IE G+D+ + + + +ENA+  GL+QL+Q
Sbjct: 858  AHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVNTLFVENADRMGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++     Y  +  L++    RL  +K+      GF IA  DL  R  G +
Sbjct: 918  LRGRIGRSSRVAYAYFTYQQNKVLTEVGEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G    +     L+  +L  A
Sbjct: 978  LGKQQHGFIDSVGYD--LYTQMLSEA 1001


>gi|28377424|ref|NP_784316.1| transcription-repair coupling factor [Lactobacillus plantarum WCFS1]
 gi|28270256|emb|CAD63157.1| transcription-repair coupling factor [Lactobacillus plantarum WCFS1]
          Length = 1175

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 136/446 (30%), Positives = 227/446 (50%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  A  E +A ++  L  +++ +   G     +         + P+  T  Q 
Sbjct: 568  EWTKAKRKVAAKIEDIADELVDLYAKREAE--KGYAFPPDDSYQDDFDNDFPYPETPDQI 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VAL A   A+EAG Q   + P  ILAQQHY
Sbjct: 626  RSINEIKHDMERPKPMDRLLVGDVGYGKTEVALRAAFKAIEAGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +    +   I V +++        ++ ++++  G+  I++GTH L    + +  L L+
Sbjct: 686  ETMLNRFEGYPINVGMLSRFRTTKEMKETVQQLKSGEIDIVVGTHRLLSKDVAFADLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L     +  VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746  IIDEEQRFGVKHKERLKALKASVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPI 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  +    + +++  ++      +   VV +   L     +++
Sbjct: 806  QTYVMEQN-FGVIKEGIEREMQRNGQVFYLHNRV-----HDIDKVVAQIKDLVPD--AAV 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A I G+M +   E ++  F  G   +L+ TT+IE G+D+ + + + +ENA+  GL+QL+Q
Sbjct: 858  AHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVNTLFVENADRMGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++     Y  +  L++    RL  +K+      GF IA  DL  R  G +
Sbjct: 918  LRGRIGRSSRVAYAYFTYQQNKVLTEVGEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G    +     L+  +L  A
Sbjct: 978  LGKQQHGFIDSVGYD--LYTQMLSEA 1001


>gi|33597889|ref|NP_885532.1| transcription-repair coupling factor [Bordetella parapertussis 12822]
 gi|33574318|emb|CAE38652.1| transcription-repair coupling factor [Bordetella parapertussis]
          Length = 1151

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 145/473 (30%), Positives = 227/473 (47%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  ++  ++       +     +       F  T  Q 
Sbjct: 558  QWDKARRKAARQVRDTAAELLALYAQRAAREG--YAFKLPMSDYEAFAEGFGFEETPDQA 615

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH 
Sbjct: 616  AAIQAVIMDMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVANGKQVALLCPTTLLAEQHA 675

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + V  ++          A+E I  G+  I+IGTH +    +++ +L LV
Sbjct: 676  QTFSDRFADWPVRVVELSRFRSAKEVAAAVEGINDGRVDIVIGTHKILSKDVRFKRLGLV 735

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I   P  R  I
Sbjct: 736  IIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPHKRLAI 795

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +   +    + E L   L  G + Y++  ++E        +   R   L     + I
Sbjct: 796  KTFVRREDG-STIREALLRELKRGGQVYFLHNEVETIH-----NRRARLEELVPE--ARI 847

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F      +L+ TT+IE GID+  A+ I+I  A+ FGLAQLHQ
Sbjct: 848  AVAHGQMPERELEQVMKGFYQQRHNVLLCTTIIETGIDIPTANTIVIHRADRFGLAQLHQ 907

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTR---LSVLKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL      ++ N+  R   +  ++    GF +A  DL+ R  GEI
Sbjct: 908  LRGRVGRSHHQAYAYLLTPGEDAITNNAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEI 967

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG  QSG          +++ +L  A +  K    ++PDL +    +  + L+
Sbjct: 968  LGDSQSG--NIQEVGFSMYNEMLNEAVRALKA--GEEPDLDAPFNLACEVNLH 1016


>gi|302669664|ref|YP_003829624.1| transcription-repair coupling factor Mfd [Butyrivibrio
            proteoclasticus B316]
 gi|302394137|gb|ADL33042.1| transcription-repair coupling factor Mfd [Butyrivibrio
            proteoclasticus B316]
          Length = 1191

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 142/450 (31%), Positives = 235/450 (52%), Gaps = 17/450 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
              EW+    +  A  E +A  +  L  ++Q  K      + +    Q+     P+  T  
Sbjct: 582  SVEWSHTKSKVKAAVEEVAQDLVELYAKRQEAKGHQ--FSPDTVWQQEFEDAFPYQETDD 639

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            Q +AI+D  +DM     M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  ILAQQ
Sbjct: 640  QLTAIEDTKRDMESGIIMDRLVCGDVGFGKTEIAIRAAFKAVQDGKQVAVLVPTTILAQQ 699

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            HY    +  ++  + V++++     A ++K +  +  G   I+IGTH L    +QY  L 
Sbjct: 700  HYNTFSERMRDFPVRVDLMSRFRTAAEQKKTIVDLKKGLVDIVIGTHRLLSKDVQYKDLG 759

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+IVDE+ RFGV  + KL        VL ++ATPIPRTL ++ +G  ++S + E P  R 
Sbjct: 760  LLIVDEEQRFGVTHKEKLKTLKENIDVLTLSATPIPRTLHMSLVGIREMSVLEEAPNDRM 819

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            PI+T ++  N  + + E +   L+   + Y++  ++    +     V  +   L     +
Sbjct: 820  PIQTYVMEYND-ELIREAIARELARNGQVYYVYNRVNTIAD-----VAAQIQKLVPE--A 871

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            ++A  HG+M + + E +M  F +GT  +L++TT+IE G+D+ + + +II +++  GL+QL
Sbjct: 872  NVAFAHGQMKESELERIMYDFIDGTIDVLVSTTIIETGLDIPNVNTMIIHDSDKMGLSQL 931

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            +QLRGRVGR    +   L+Y     L + +  RLS ++   D   GF IA  DL+ R  G
Sbjct: 932  YQLRGRVGRSNRTAYAFLMYKKDKMLKEVAEKRLSAIREFTDLGSGFKIAMRDLEIRGAG 991

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARK 661
             +LG KQSG         +L+  +L  A +
Sbjct: 992  SLLGRKQSGHM--QAVGYDLYCKMLGEAVR 1019


>gi|306992251|gb|ADN19242.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 170/453 (37%), Positives = 267/453 (58%), Gaps = 8/453 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LTQK 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992255|gb|ADN19244.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 168/455 (36%), Positives = 267/455 (58%), Gaps = 8/455 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 450


>gi|295101119|emb|CBK98664.1| transcription-repair coupling factor [Faecalibacterium prausnitzii
           L2-6]
          Length = 1161

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 142/478 (29%), Positives = 231/478 (48%), Gaps = 21/478 (4%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           DLL + + P   E   +     K    EW     +     E +A ++  L  R+  ++  
Sbjct: 537 DLLSRYTAPGDEEKVKLA----KLGGTEWQRTRAKVKKATEEMAQELIELYARR--RQAT 590

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G     +G+          +  T  Q +A  +I +DM +   M R+L GDVG GKT VA 
Sbjct: 591 GYAFPADGEWQSDFESRFEYDETDDQLTATAEIKKDMEKGWPMDRLLCGDVGVGKTEVAF 650

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A    V  G Q  I+AP  +LA QHY  I    +   + V +++       +++ L  +
Sbjct: 651 RAAFKCVMGGKQCAILAPTTLLAWQHYNSIISRMEAFPVKVGLLSRFRTPKQQKETLRGL 710

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G   I+IGTH L    ++++ L LVI+DE+ RFGV+ + KL +      +L ++ATPI
Sbjct: 711 QAGSVDIVIGTHRLLSKDVRFHDLGLVIIDEEQRFGVKHKEKLKENFIGVDMLTLSATPI 770

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL +   G  D+S I + P  R+P++T ++  N +  + E +K  L+ G + Y++  +
Sbjct: 771 PRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDV-ILAEAMKKELARGGQVYYLHNR 829

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           ++  +                   + + I HG+M++ +   V     NG   +L+ TT+I
Sbjct: 830 VDNIESCAAHVS-------QMVPGARVGIAHGKMTEEELNPVWQHLLNGEIDILVCTTLI 882

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLS 609
           E GIDV + + +IIE+A+  GLAQL+Q+RGRVGR    +     +     L+  +  RLS
Sbjct: 883 ETGIDVRNCNTLIIEDADRMGLAQLYQIRGRVGRSGRKAYAYFTFRRDKTLTDIAQKRLS 942

Query: 610 VLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ++       GF IA  DL+ R  G +LG  Q G  + +     L+  +L  A   AK
Sbjct: 943 AIREFTAFGSGFRIAMRDLQIRGAGSLLGHSQHGHMEAVGYD--LYVKMLGQAIARAK 998


>gi|4090863|gb|AAC98900.1| transcription-repair coupling factor [Listeria monocytogenes]
          Length = 1190

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 142/452 (31%), Positives = 240/452 (53%), Gaps = 19/452 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T+ Q 
Sbjct: 584  EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSADDEMQREFEEAFPYQETEDQL 641

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 642  RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 701

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 702  ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 761

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 762  IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 821

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T +   N +  V E ++  L+   + Y++  ++E        S+ ++ + +      + 
Sbjct: 822  QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVE--------SITQKADEISAMVPDAR 872

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+
Sbjct: 873  VATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLY 932

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+    +Y     L + +  RLS +K       GF IA  DL  R  G 
Sbjct: 933  QLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGN 992

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ILG +Q G    +     L+  +L+ A +  K
Sbjct: 993  ILGAQQHGFIDSVGFD--LYSQMLKEAIEAKK 1022


>gi|116871596|ref|YP_848377.1| transcription-repair coupling factor [Listeria welshimeri serovar 6b
            str. SLCC5334]
 gi|116740474|emb|CAK19594.1| transcription-repair coupling factor [Listeria welshimeri serovar 6b
            str. SLCC5334]
          Length = 1179

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 142/452 (31%), Positives = 240/452 (53%), Gaps = 19/452 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T+ Q 
Sbjct: 573  EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631  RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K+  Q   I + +++    +  + + L+ + +G   I++GTH L    ++Y  L L+
Sbjct: 691  ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDIVVGTHRLLSKDVEYQDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751  VVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T +   N +  V E ++  L+   + Y++  ++E        S+ ++ + +      + 
Sbjct: 811  QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVE--------SITQKADEISAMVPDAR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+
Sbjct: 862  VATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+    +Y     L + +  RLS +K       GF IA  DL  R  G 
Sbjct: 922  QLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ILG +Q G    +     L+  +L+ A +  K
Sbjct: 982  ILGAQQHGFIDSVGFD--LYSQMLKEAIEAKK 1011


>gi|306992253|gb|ADN19243.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 168/451 (37%), Positives = 265/451 (58%), Gaps = 8/451 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LTQK 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMTDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           F NG   +L++TTVIEVG++V +A+++I+EN
Sbjct: 416 FVNGEIDILVSTTVIEVGVNVPNATVMIVEN 446


>gi|306992189|gb|ADN19211.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992191|gb|ADN19212.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992193|gb|ADN19213.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992195|gb|ADN19214.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992197|gb|ADN19215.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 168/454 (37%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 449


>gi|258513568|ref|YP_003189790.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans
            DSM 771]
 gi|257777273|gb|ACV61167.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans
            DSM 771]
          Length = 1197

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 145/453 (32%), Positives = 236/453 (52%), Gaps = 21/453 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW+    +     + +A ++  L   ++     G P + +    Q+     P+  T  Q 
Sbjct: 603  EWSRVKSKVKEAVKEMAQELLALYAAREA--VQGHPFSKDTVWQQEFEAAFPYEETPDQL 660

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+++  DM +   M R+L GDVG GKT VAL A   AV  G Q  ++ P  ILAQQH+
Sbjct: 661  KAIEEVKADMERPRPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVLVPTTILAQQHF 720

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+      + + +++  +    +R+ ++ +  GQ  I+IGTH L QD I++  L LV
Sbjct: 721  NTFKERFAKYPVNIAMLSRFITARRQRQIVQELLLGQVDIVIGTHRLVQDDIKFKDLGLV 780

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV  + KL Q      VL +TATPIPRTL ++ +G  D S +   P  R P+
Sbjct: 781  VVDEEQRFGVTHKEKLKQLRQNVDVLTLTATPIPRTLHMSIVGVRDTSLLETPPEDRIPV 840

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TS 516
            +T ++    +  V E ++  L  G + Y++  ++ +          +R     +     +
Sbjct: 841  QTYVLEEEPV-IVREAIRRELGRGGQVYYVHNRVADL---------DRVAGWLKGLVPDA 890

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +IAI HG+M +   E+VM  F N    +L+ TT+IE G+D+ + + +I+++A++ GLAQL
Sbjct: 891  AIAIGHGQMKEDRLENVMLDFMNKKFDILLCTTIIETGLDIQNVNTLIVKDADYMGLAQL 950

Query: 577  HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
            +QLRGRVGR   ++     +     +S+ +  RLS ++       G+ IA  DL+ R  G
Sbjct: 951  YQLRGRVGRTNRLAYAYCTFRGDKVMSELAEKRLSAVREFTEFGSGYKIAMRDLEIRGAG 1010

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             ILG +Q G         +L+  LLE A  +AK
Sbjct: 1011 NILGPEQHGHI--AAVGFDLYCRLLEEAVLEAK 1041


>gi|306992335|gb|ADN19284.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 451

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 168/456 (36%), Positives = 268/456 (58%), Gaps = 8/456 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            F NG   +L++TTVIEVG++V +A+++I+ENAE F
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAERF 451


>gi|306992491|gb|ADN19362.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 167/451 (37%), Positives = 264/451 (58%), Gaps = 8/451 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E       R  Y EL   Q+
Sbjct: 61  HDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQAKH---RFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LTQK 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           F NG   +L++TTVIEVG++V +A+++I+EN
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVEN 446


>gi|94989515|ref|YP_597615.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS10270]
 gi|94543023|gb|ABF33071.1| Transcription-repair coupling factor [Streptococcus pyogenes
           MGAS10270]
          Length = 1167

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 151/452 (33%), Positives = 236/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  ++ G   + +  + +    +  F  
Sbjct: 555 KLNDGRFQKTKQKVARQVEDIADDLLKLYA--ERSQQKGFSFSPDDDLQRAFDDDFAFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY+  K   +N  + V++++    +  + + LER+  GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYKNFKARFENYPVEVDVLSRFRSKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++  +        ++   L E 
Sbjct: 793 NRYPVQTYVLE-NNPGLVREAIIREMDRGGQIFYVYNKVDTIE--------KKVAELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 993


>gi|306992237|gb|ADN19235.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 169/454 (37%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LTQK
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992365|gb|ADN19299.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 167/455 (36%), Positives = 267/455 (58%), Gaps = 8/455 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 EFANGKIDILVSTTVIEVGVNVPNATVMIVENAER 450


>gi|306992441|gb|ADN19337.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 168/454 (37%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992243|gb|ADN19238.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 169/453 (37%), Positives = 267/453 (58%), Gaps = 8/453 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LTQK 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|257457388|ref|ZP_05622559.1| transcription-repair coupling factor [Treponema vincentii ATCC
           35580]
 gi|257445310|gb|EEV20382.1| transcription-repair coupling factor [Treponema vincentii ATCC
           35580]
          Length = 1154

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 145/447 (32%), Positives = 246/447 (55%), Gaps = 17/447 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +   +     E +A ++  L  R++           + +         P+  T+ Q +
Sbjct: 564 WENRKNKVKKSVEDIADKLIDLYSRRKAAAGFAF--AKDNEWQTAFEAAFPYEETEDQLT 621

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            I D+  DM +   M R++ GDVG GKT +A+ A   AV  G QA  +AP  ILA+QH+E
Sbjct: 622 CIADVKTDMEKPVPMDRLICGDVGYGKTEIAMRAAFKAVMNGKQAAFLAPTTILAEQHFE 681

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++  Q   + +  ++  + +A ++K L+++ +G+  I+IGTH + Q  +Q+  L L+I
Sbjct: 682 TFQERFQKFPVKLARLSRFVSKAEQKKVLDQLKNGELDIVIGTHRVIQKDVQFKDLGLMI 741

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ RFGV+ + +L Q  T    L ++ATPIPRTL ++ L   D+S +T  P  R+P++
Sbjct: 742 VDEEQRFGVKDKERLKQMKTNIDCLSLSATPIPRTLHISLLKIRDMSLLTTPPQNRRPVE 801

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           TVI P +  +++ + ++  +  G + +++  ++E  +E+ ++        L       I 
Sbjct: 802 TVISPFD-PEKIAQAIRFEVDRGGQVFYLHNRVESLEETRYKIQQLIPEVL-------ID 853

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+MS  + E +   F  G   +LIATT+IE GID+ +A+ III+ A+ +G++QL+QL
Sbjct: 854 IAHGQMSATELEDIFRRFNMGGFHVLIATTIIENGIDIPNANTIIIDRADMYGVSQLYQL 913

Query: 580 RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR +  +   LLY  +  LS+ +  RL V+ +      GF IA +D++ R  G +L
Sbjct: 914 RGRVGRSDRKAYAYLLYPENKALSEVAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLL 973

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARK 661
           G +QSG         +L+  LLE A +
Sbjct: 974 GKEQSG--DIYSVGFDLYLRLLEEAVE 998


>gi|118594716|ref|ZP_01552063.1| transcription-repair coupling factor [Methylophilales bacterium
           HTCC2181]
 gi|118440494|gb|EAV47121.1| transcription-repair coupling factor [Methylophilales bacterium
           HTCC2181]
          Length = 1133

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 153/492 (31%), Positives = 242/492 (49%), Gaps = 18/492 (3%)

Query: 196 KKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
           +    S          P  K     W    +  L      A ++  L  ++  ++     
Sbjct: 514 QLHLVSRYSGGPAESAPIHKLGSGSWEKSKKRALLQIHDTAAELLDLYAKRSLQRGYSSK 573

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           IN+   ++   +   PF  T  Q+ AI+ +++DM     M R++ GDVG GKT VAL A 
Sbjct: 574 INLNDYVS--FVEGFPFEETVDQKEAIERVIEDMESARPMDRLICGDVGFGKTEVALRAA 631

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             +V  G QA+++ P  +LA+QH+           I +E I+    +  + ++LE++  G
Sbjct: 632 FISVLNGKQAIVLVPTTLLAEQHFNNFSDRFAKWPIKIEEISRFKSKKQQLESLEKLEEG 691

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           +  IIIGTH L Q  I++  L LV++DE+HRFGV+Q+ KL        VL +TATPIPRT
Sbjct: 692 KIDIIIGTHRLLQPDIKFKDLGLVVIDEEHRFGVRQKEKLKAFRRNVDVLALTATPIPRT 751

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +   G  + S I   P  R  IKT ++  ++   + E +    + G + Y++  ++  
Sbjct: 752 LSMAMEGLREFSVIATPPQKRLSIKTFVVNHSQ-GIIKEAVAREFNRGGQIYFLHNEVNT 810

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +S+ E+ ++L     + I + HG++ + + E VM  F      +L+ +T+IE G
Sbjct: 811 I-----QSMHEKLSALLPD--AKIGVAHGQLQEKELERVMQDFHQQRINVLLCSTIIETG 863

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK 612
           ID+  A+ II+  A+ FGLAQLHQLRGRVGR    +   LL      L+ N+  RL  ++
Sbjct: 864 IDIPTANTIIMNRADKFGLAQLHQLRGRVGRSHHQAYAYLLIDEERKLTSNAKKRLEAIQ 923

Query: 613 NTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
             ED   G+ +A  DL+ R  GE+LG  QSG    +     +   +L  A K  K     
Sbjct: 924 LMEDLGAGYHLAMHDLEIRGAGELLGDNQSGQMHEIGFSLYMD--MLNHAIKQLKKGEKL 981

Query: 670 DPDLTSVRGQSI 681
           D DL     + I
Sbjct: 982 DLDLPLASNKEI 993


>gi|306992345|gb|ADN19289.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992347|gb|ADN19290.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992353|gb|ADN19293.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992355|gb|ADN19294.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992357|gb|ADN19295.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 167/454 (36%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  KDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 FANGKIDILVSTTVIEVGVNVPNATVMIVENAER 449


>gi|306992297|gb|ADN19265.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992301|gb|ADN19267.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992303|gb|ADN19268.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 167/455 (36%), Positives = 267/455 (58%), Gaps = 8/455 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 450


>gi|295425671|ref|ZP_06818358.1| transcription-repair coupling factor [Lactobacillus amylolyticus
           DSM 11664]
 gi|295064687|gb|EFG55608.1| transcription-repair coupling factor [Lactobacillus amylolyticus
           DSM 11664]
          Length = 1165

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 140/446 (31%), Positives = 230/446 (51%), Gaps = 17/446 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    R+  +  E +A  +  L   ++ +   G   + + ++ +K     P+  T  Q 
Sbjct: 563 EWAKTKRKVQSKVEDIADDLINLYAARESE--KGFAFSPDDELQRKFDDAFPYVETPDQL 620

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +IK+I  DM +   M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 621 RSIKEIKADMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDNKQVAFLVPTTILAQQHY 680

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I+   ++  +   +++     A  +K +  +  G+  +++GTH +    + +  L L+
Sbjct: 681 ETIQDRFKDFPVNTAMLSRFQTPAESKKIIAGLEDGKIDLVVGTHRILSKDVHFKDLGLL 740

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + KL Q      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 741 IIDEEQRFGVKHKEKLKQMKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPI 800

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++       + +     +  G + +++  +I +  E     VV R   L  +  + I
Sbjct: 801 QTYVME-QTPSVIRDACLREMQRGGQVFYLHNRIGDIDE-----VVARLEKLLPN--ARI 852

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HGRMS    E ++  F N    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+Q
Sbjct: 853 ASAHGRMSQNQLEDILYRFLNREFDVLVTTTIIETGIDMPNVNTMIIEDADHYGLSQLYQ 912

Query: 579 LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGR+GR   ++    LY  +  L++    RL  +++      GF IA  DL  R  G +
Sbjct: 913 LRGRIGRSARLAYAYFLYKQNKVLTEVREKRLDAIRDFTELGSGFKIAMRDLAIRGAGNM 972

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIA 659
           LG +Q G    +     L+  +L  A
Sbjct: 973 LGSQQHGFIDSVGYD--LYSQMLSDA 996


>gi|217965700|ref|YP_002351378.1| transcription-repair coupling factor [Listeria monocytogenes HCC23]
 gi|217334970|gb|ACK40764.1| transcription-repair coupling factor [Listeria monocytogenes HCC23]
 gi|307569753|emb|CAR82932.1| transcription-repair coupling factor [Listeria monocytogenes L99]
          Length = 1179

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 141/452 (31%), Positives = 240/452 (53%), Gaps = 19/452 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T+ Q 
Sbjct: 573  EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631  RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691  ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751  IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T +   N +  V E ++  L+   + Y++  ++E        S+ ++ + +      + 
Sbjct: 811  QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVE--------SITQKADEISAMVPDAR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A  HG+M + + E+V+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+
Sbjct: 862  VATAHGQMGESELEAVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+    +Y     L + +  RLS +K       GF IA  DL  R  G 
Sbjct: 922  QLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ILG +Q G    +     L+  +L+ A +  K
Sbjct: 982  ILGAQQHGFIDSVGFD--LYSQMLKEAIEAKK 1011


>gi|90021441|ref|YP_527268.1| transcription-repair coupling protein Mfd [Saccharophagus degradans
            2-40]
 gi|89951041|gb|ABD81056.1| transcription-repair coupling factor [Saccharophagus degradans 2-40]
          Length = 1153

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 143/458 (31%), Positives = 230/458 (50%), Gaps = 19/458 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+       +A ++  +  ++Q ++        +    +    + PF  T  Q+
Sbjct: 556  QWQKAKRKAAEKLRDVAAELLEIYAKRQAREGFQYTYPKD--AYEIFAESFPFEETVDQQ 613

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  + QDM     M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY
Sbjct: 614  QAIDAVRQDMISAQPMDRLVCGDVGFGKTEVAMRAAFIAVQNSKQVAVLVPTTLLAQQHY 673

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  K    +  + VE+I+         +  +++  G+  I+IGTH L Q  + +  L L+
Sbjct: 674  ENFKDRFADWPVNVEVISRFKSSKDISEIQKKLEAGKVDILIGTHKLIQGELIFPNLGLL 733

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L    T   +L +TATPIPRTL +   G  D+S I   PA R  +
Sbjct: 734  IIDEEHRFGVRQKEALKALRTEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPAKRLSV 793

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            KT +   +    + E +   +  G + Y++  ++   +        +    L E    + 
Sbjct: 794  KTFVRQSDN-AVIKEAILREIMRGGQLYYLHNEVSTIE--------KTAADLQELVPEAR 844

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I + HG+M + + E+ M  F +    +L+ TT+IE GID+  A+ III+ A+ FGLAQLH
Sbjct: 845  IRVAHGQMRERELEAAMSDFYHKRHNILVCTTIIETGIDIPSANTIIIDRADKFGLAQLH 904

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR    +   LL      ++ ++  RL  +   +D   GF +A  DL+ R  GE
Sbjct: 905  QLRGRVGRSHHQAYAYLLTPHKKAMTADAVKRLEAIAEAQDLGAGFTLASHDLEIRGAGE 964

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            +LG +QSG  + +     L+  +L+ A +  K     D
Sbjct: 965  LLGDEQSGQMQAIGFS--LYMEMLDKAVEALKSGKELD 1000


>gi|306992211|gb|ADN19222.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 168/453 (37%), Positives = 267/453 (58%), Gaps = 8/453 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992187|gb|ADN19210.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 168/454 (37%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 449


>gi|254829305|ref|ZP_05233992.1| transcription-repair coupling factor [Listeria monocytogenes FSL
            N3-165]
 gi|258601718|gb|EEW15043.1| transcription-repair coupling factor [Listeria monocytogenes FSL
            N3-165]
          Length = 1179

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 142/452 (31%), Positives = 240/452 (53%), Gaps = 19/452 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T+ Q 
Sbjct: 573  EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631  RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691  ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751  IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T +   N +  V E ++  L+   + Y++  ++E        S+ ++ + +      + 
Sbjct: 811  QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVE--------SITQKADEISAMVPDAR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+
Sbjct: 862  VATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+    +Y     L + +  RLS +K       GF IA  DL  R  G 
Sbjct: 922  QLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ILG +Q G    +     L+  +L+ A +  K
Sbjct: 982  ILGAQQHGFIDSVGFD--LYSQMLKEAIEAKK 1011


>gi|328948120|ref|YP_004365457.1| transcription-repair coupling factor [Treponema succinifaciens DSM
            2489]
 gi|328448444|gb|AEB14160.1| transcription-repair coupling factor [Treponema succinifaciens DSM
            2489]
          Length = 1246

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 141/447 (31%), Positives = 239/447 (53%), Gaps = 17/447 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W++   +     E +A ++  L  ++Q     G P   + +         P+  T  Q S
Sbjct: 656  WSARKAKVQQKVEEIAEKLIDLYSKRQA--SRGFPFPKDTEWNAAFEAAFPYEDTPDQFS 713

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            A ++I  DM +   M R++ GDVG GKT +A+ A   AV  G Q   +AP  ILA+QH+E
Sbjct: 714  ATQEIKADMEKPVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQVAFLAPTTILAEQHFE 773

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              ++  +N  + +  ++  +    ++K + +IA G+  IIIGTH + Q  + +  L L+I
Sbjct: 774  NSQERFKNFPVTIAQLSRFVSPTEQKKIISKIASGEIDIIIGTHRILQKDVIFKNLGLMI 833

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV+ + KL    T    L M+ATPIPRTL ++ L   D+S +T  P  R+PI+
Sbjct: 834  IDEEQRFGVKDKEKLKTLKTNIDCLAMSATPIPRTLHMSLLKIRDMSLLTTPPQNRQPIE 893

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T I   N  ++V   ++  +  G + +++  ++E  +E+  +       +L       + 
Sbjct: 894  TAIEEYND-EKVARAIRNEVQRGGQVFYLHNRVETLEETRLK-----LENLVPEML--VE 945

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              HG+M+  + + +   FK G   +L+ATT+IE GID+ + + III+ A+ +G++QL+QL
Sbjct: 946  TAHGKMTSEELDDIFRRFKMGGFHILVATTIIENGIDIPNVNTIIIDRADMYGVSQLYQL 1005

Query: 580  RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR +  +   L Y  +  LS+ +  RL V+ +      GF IA +D++ R  G +L
Sbjct: 1006 RGRVGRSDRKAYAYLFYPQNKALSEVAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLL 1065

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARK 661
            G  QSG  +      E++ +LL  A +
Sbjct: 1066 GKDQSG--EVYAVGFEMYLTLLNSAIE 1090


>gi|223933455|ref|ZP_03625440.1| transcription-repair coupling factor [Streptococcus suis 89/1591]
 gi|223897893|gb|EEF64269.1| transcription-repair coupling factor [Streptococcus suis 89/1591]
          Length = 1164

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 166/565 (29%), Positives = 280/565 (49%), Gaps = 31/565 (5%)

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-FPLIEAVY 160
            L+F   K    K +  + R+  ++   +++K+   +    Y+ H+   +  +  IE + 
Sbjct: 454 KLVFITEKEIFNKKMKRKTRRTNIS-NAERIKDYSELAVGDYVVHHVHGIGQYLGIETIE 512

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
              +G+  D    +  +   R+ +  E I  DLL K    S  +A  +     K  D  +
Sbjct: 513 --ISGIHRDYL-TVQYQNFDRISIPVEQI--DLLSKY-LASDGKAPKV----NKLNDGRF 562

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
               ++     E +A  +  L    +  +  G   + + +   +         T  Q  +
Sbjct: 563 QRTKQKVQKQVEDIADDLIKLYA--ERSQLKGFAFSPDDENQIEFDNYFTHVETDDQLRS 620

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I +I QDM + + M R+L GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY  
Sbjct: 621 IDEIKQDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVLAQQHYAN 680

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            ++      + V++++    +A + K LE++  GQ  I+IGTH L    + +  L L+++
Sbjct: 681 FQERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILIGTHRLLSKDVVFADLGLLVI 740

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+ RFGV+ + +L +      VL +TATPIPRTL ++ LG  D+S I   P  R P++T
Sbjct: 741 DEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSMLGIRDLSVIETPPTNRYPVQT 800

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IA 519
            ++  N    + + +   +  G + Y++  +++  +        ++ + L E    + I 
Sbjct: 801 YVMETN-PSVIRDAMLREIDRGGQVYYLYNKVDTIE--------QKVSELKELVPEATIG 851

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG+MS+I  E+ + +F  G   +L+ TT+IE G+D+ +A+ + IENA+H GL+ L+QL
Sbjct: 852 YVHGQMSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENADHMGLSTLYQL 911

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR   I+   L+Y P   L++ +  RL  +K       GF IA +DL  R  G IL
Sbjct: 912 RGRVGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQDLSIRGAGNIL 971

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIA 659
           G  QSG         E++  LLE A
Sbjct: 972 GAAQSGFID--SVGYEMYSQLLEQA 994


>gi|302023115|ref|ZP_07248326.1| transcription-repair coupling factor [Streptococcus suis 05HAS68]
 gi|330831857|ref|YP_004400682.1| transcription-repair coupling factor [Streptococcus suis ST3]
 gi|329306080|gb|AEB80496.1| transcription-repair coupling factor [Streptococcus suis ST3]
          Length = 1164

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 166/565 (29%), Positives = 280/565 (49%), Gaps = 31/565 (5%)

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN-FPLIEAVY 160
            L+F   K    K +  + R+  ++   +++K+   +    Y+ H+   +  +  IE + 
Sbjct: 454 KLVFITEKEIFNKKMKRKTRRTNIS-NAERIKDYSELAVGDYVVHHVHGIGQYLGIETIE 512

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
              +G+  D    +  +   R+ +  E I  DLL K    S  +A  +     K  D  +
Sbjct: 513 --ISGIHRDYL-TVQYQNFDRISIPVEQI--DLLSKY-LASDGKAPKV----NKLNDGRF 562

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
               ++     E +A  +  L    +  +  G   + + +   +         T  Q  +
Sbjct: 563 QRTKQKVQKQVEDIADDLIKLYA--ERSQLKGFAFSPDDENQIEFDNYFTHVETDDQLRS 620

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I +I QDM + + M R+L GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY  
Sbjct: 621 IDEIKQDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVLAQQHYAN 680

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            ++      + V++++    +A + K LE++  GQ  I+IGTH L    + +  L L+++
Sbjct: 681 FQERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILIGTHRLLSKDVVFADLGLLVI 740

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+ RFGV+ + +L +      VL +TATPIPRTL ++ LG  D+S I   P  R P++T
Sbjct: 741 DEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSMLGIRDLSVIETPPTNRYPVQT 800

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IA 519
            ++  N    + + +   +  G + Y++  +++  +        ++ + L E    + I 
Sbjct: 801 YVMETN-PSVIRDAMLREIDRGGQVYYLYNKVDTIE--------QKVSELKELVPEATIG 851

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG+MS+I  E+ + +F  G   +L+ TT+IE G+D+ +A+ + IENA+H GL+ L+QL
Sbjct: 852 YVHGQMSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENADHMGLSTLYQL 911

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR   I+   L+Y P   L++ +  RL  +K       GF IA +DL  R  G IL
Sbjct: 912 RGRVGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQDLSIRGAGNIL 971

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIA 659
           G  QSG         E++  LLE A
Sbjct: 972 GAAQSGFID--SVGYEMYSQLLEQA 994


>gi|306992427|gb|ADN19330.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992429|gb|ADN19331.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992447|gb|ADN19340.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992449|gb|ADN19341.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992451|gb|ADN19342.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992469|gb|ADN19351.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992471|gb|ADN19352.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 168/453 (37%), Positives = 267/453 (58%), Gaps = 8/453 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|332365100|gb|EGJ42865.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK355]
          Length = 1167

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 147/452 (32%), Positives = 239/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     + +A  +  L    +  +  G   + +    ++   + P+  
Sbjct: 559 KLNDGRFQKSKQKVQHQVQDIADDLIKLYA--ERSQLKGFAFSADDSNQEEFDNDFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I+++ +DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 617 TEDQLRSIQEVKKDMESSRPMDRLLVGDVGFGKTEVAMRAAFKAVNNHKQVAVLVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  + VE+++    +A +++ LE++  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHYTNFKERFNDFAVNVEVLSRFRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIIIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 797 NRYPVQTYVLESNPT-VIREAILREIDRGGQVYYLYNKVDTIE--------QKVSELREL 847

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H G
Sbjct: 848 IPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGSMQSGFID--SVGFEMYSQLLEEA 997


>gi|306992285|gb|ADN19259.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/455 (36%), Positives = 267/455 (58%), Gaps = 8/455 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 450


>gi|306992333|gb|ADN19283.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/454 (36%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 449


>gi|332363612|gb|EGJ41393.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK1059]
          Length = 1167

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 147/452 (32%), Positives = 239/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     + +A  +  L    +  +  G   + +    ++   + P+  
Sbjct: 559 KLNDGRFQKSKQKVQHQVQDIADDLIKLYA--ERSQLKGFAFSADDSNQEEFDNDFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I+++ +DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 617 TEDQLRSIQEVKKDMESSRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  + VE+++    +A +++ LE++  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHYTNFKERFNDFAVNVEVLSRFRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIIIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 797 NRYPVQTYVLESNPT-VIREAVLREIDRGGQVYYLYNKVDTIE--------QKVSELREL 847

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H G
Sbjct: 848 IPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGSMQSGFID--SVGFEMYSQLLEEA 997


>gi|306992275|gb|ADN19254.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992279|gb|ADN19256.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/454 (36%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 449


>gi|296329557|ref|ZP_06872043.1| transcription-repair coupling factor [Bacillus subtilis subsp.
            spizizenii ATCC 6633]
 gi|305672754|ref|YP_003864425.1| transcription-repair coupling factor [Bacillus subtilis subsp.
            spizizenii str. W23]
 gi|296153300|gb|EFG94163.1| transcription-repair coupling factor [Bacillus subtilis subsp.
            spizizenii ATCC 6633]
 gi|305410997|gb|ADM36115.1| transcription-repair coupling factor [Bacillus subtilis subsp.
            spizizenii str. W23]
          Length = 1177

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 237/449 (52%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++     + +A  +  L   ++     G   + + ++ ++     P+  T+ Q 
Sbjct: 572  EWKRVKKKVETSVQDIADDLIKLYAEREA--SKGYAFSPDHEMQREFESAFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  ILAQQHY
Sbjct: 630  RSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I +  Q+  I + +++    +    + ++ + +G   I+IGTH L    + Y  L L+
Sbjct: 690  ETITERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKDVVYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYNG-ALVREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--AKV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++ + E+VM +F  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  AYAHGKMTENELETVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +Q G    +     L+  +L+ A ++
Sbjct: 982  LGAQQHGFIDSVGFD--LYSQMLKEAIEE 1008


>gi|290894278|ref|ZP_06557245.1| transcription-repair coupling factor [Listeria monocytogenes FSL
            J2-071]
 gi|290556162|gb|EFD89709.1| transcription-repair coupling factor [Listeria monocytogenes FSL
            J2-071]
          Length = 1179

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 141/452 (31%), Positives = 240/452 (53%), Gaps = 19/452 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T+ Q 
Sbjct: 573  EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631  RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691  ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751  IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T +   N +  V E ++  L+   + Y++  ++E        S+ ++ + +      + 
Sbjct: 811  QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVE--------SITQKADEISAMVPDAR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A  HG+M + + E+V+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+
Sbjct: 862  VATAHGQMGESELEAVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+    +Y     L + +  RLS +K       GF IA  DL  R  G 
Sbjct: 922  QLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ILG +Q G    +     L+  +L+ A +  K
Sbjct: 982  ILGAQQHGFIDSVGFD--LYSQMLKEAIEAKK 1011


>gi|226309690|ref|YP_002769584.1| transcription-repair coupling factor [Brevibacillus brevis NBRC
            100599]
 gi|226092638|dbj|BAH41080.1| transcription-repair coupling factor [Brevibacillus brevis NBRC
            100599]
          Length = 1182

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 139/457 (30%), Positives = 233/457 (50%), Gaps = 17/457 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +  +  + +A  +  L   ++         + +    ++     P+  T+ Q 
Sbjct: 574  EWKRVKNKVQSSVKDIAEDLIKLYAARESAVGHT--FSPDTTEQREFEAMFPYQETQDQL 631

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI ++  DM +K  M R++ GDVG GKT VA+ A   AV  G Q  ++ P  ILAQQHY
Sbjct: 632  RAISEVKADMERKRPMDRLVCGDVGYGKTEVAIRAAFKAVMDGKQVAVLVPTTILAQQHY 691

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  ++      I VE+++    +  +   L+ +  G   ++IGTH L    + + +L L+
Sbjct: 692  ETFRERFAEYPIRVEVLSRFRSRKEQNATLKGLKEGTVDVVIGTHRLLSKDLTFRELGLL 751

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + KL Q  T   V+ +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 752  IVDEEQRFGVSHKEKLKQIKTNVDVMTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 811

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  +    V E ++  ++   + +++  Q++         + E+ + L     + I
Sbjct: 812  QTYVMDYS-PALVREAIEREMARDGQVFFLYNQVQ-----GIEQMAEQISMLVPD--ARI 863

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ + E V+  F  G   +L++TT+IE G+D+ + + +II NA+  GL+QL+Q
Sbjct: 864  AVAHGQMNESELEGVILDFLEGNFDVLVSTTIIETGVDIPNVNTLIIYNADKMGLSQLYQ 923

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 924  LRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 983

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            LG +Q G    +     L+  +L+ A  + K  +  +
Sbjct: 984  LGAEQHGFINTVGFD--LYSQMLKEAIDELKGEVKHE 1018


>gi|328551756|gb|AEB22248.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
            TA208]
          Length = 1177

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 136/449 (30%), Positives = 236/449 (52%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++     + +A  +  L   ++     G   + + ++ ++     P+  T  Q 
Sbjct: 572  EWKRVKKKVENSVQDIADDLIKLYAEREA--SKGYAFSPDHEMQRQFEAAFPYQETDDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  ILAQQHY
Sbjct: 630  RSIQEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I +  Q+  I + +++    +    + ++ + +G   I+IGTH L    + Y  L L+
Sbjct: 690  ETIMERFQDYPINIGLLSRFRTRKESNETIKGLKNGTVDIVIGTHRLLSKDVVYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  L+ G + Y++  ++++ +        +  + L     + +
Sbjct: 810  QTYVVEYNG-ALVREAIERELARGGQVYFLYNRVDDIE-----RKADEISMLVPD--AKV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++ + ESVM +F  G   +L++TT+IE G+D+ + + +I+ + +  GL+QL+Q
Sbjct: 862  AYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDKMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +Q G    +     L+  +L+ A ++
Sbjct: 982  LGAQQHGFIDSVGFD--LYSQMLKEAIEE 1008


>gi|307244035|ref|ZP_07526154.1| transcription-repair coupling factor [Peptostreptococcus stomatis DSM
            17678]
 gi|306492559|gb|EFM64593.1| transcription-repair coupling factor [Peptostreptococcus stomatis DSM
            17678]
          Length = 1134

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 138/467 (29%), Positives = 233/467 (49%), Gaps = 20/467 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
              +W+          E +  ++  L  +++ +   G   + +     +     PF  T  
Sbjct: 563  SHDWSKAKHRVKKEIEDMTKELIDLYAKREAR--KGYKFSKDTIWQGEFEEKFPFQETDD 620

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            Q  AIKD  +DM     M R++ GDVG GKT VA+ A+  AV  G Q  ++ P  ILAQQ
Sbjct: 621  QLKAIKDTKKDMESSKAMDRLICGDVGYGKTEVAIRAIFKAVMDGKQVAVLVPTTILAQQ 680

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            HY    +  +   + VE+++       ++  ++    G   ++IGTH +    I   KL 
Sbjct: 681  HYNTFVERFEEYPMRVEVLSRFKTAKQQKDIIKDAKKGLVDVLIGTHRIVSKDIDMPKLG 740

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            LV+VDE+ RFGV+ +  L +      VL ++ATPIPRTL ++  G  D+S I E P  R 
Sbjct: 741  LVVVDEEQRFGVRHKESLKKMKANVDVLTLSATPIPRTLHMSLSGIRDMSIIEEPPQERY 800

Query: 457  PIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            P+ T +      D +I+  ++  L+   + +++  ++E   E     +  R   L     
Sbjct: 801  PVMTYVTEAK--DSIIQDEIQRELTRAGQVFFVYNRVEGIDE-----MAARIRRLVPD-- 851

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + + + HGRMS    E+ + SF +    +L+ TT+IE G+D+ +A+ +II +A+  GL+Q
Sbjct: 852  AKVGVAHGRMSSNQLENTILSFLSKEFDVLVCTTIIETGMDIANANTMIIYDADKMGLSQ 911

Query: 576  LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
            L+QLRGRVGR        L+Y  +  LS+ +  RL  +K       GF +A  DL+ R  
Sbjct: 912  LYQLRGRVGRSTRQGYAYLMYERNKVLSEVAEKRLKAIKEFTEFGSGFKVAMRDLEIRGA 971

Query: 631  GEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            G++LG +Q G      + +    L+ ++ ++  ++ +  L  + DLT
Sbjct: 972  GDVLGAQQHGHMAVIGYELYVKMLNQAIAKVKGQEVEESLDVEIDLT 1018


>gi|238917833|ref|YP_002931350.1| transcription-repair coupling factor (superfamily II helicase)
            [Eubacterium eligens ATCC 27750]
 gi|238873193|gb|ACR72903.1| transcription-repair coupling factor (superfamily II helicase)
            [Eubacterium eligens ATCC 27750]
          Length = 1206

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 142/454 (31%), Positives = 233/454 (51%), Gaps = 19/454 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +  +  E +A  +  L   +Q     G     +    Q+     P+  T  Q 
Sbjct: 597  EWGKTKSKVHSAVEEVAKDLVELYATRQR--IEGYQFGPDTVWQQEFEEMFPYEETTDQL 654

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+D   DM  +  M R++ GDVG GKT +A+ A   AV+ G Q   + P  +LA QH+
Sbjct: 655  NAIEDTKHDMESRRVMDRLICGDVGYGKTEIAIRAAFKAVQEGKQVAYLVPTTVLASQHF 714

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++  ++  + V  ++     A  ++ +E +  G   I+IGTH L    + +  L L+
Sbjct: 715  TTFEQRMKDFPVTVAQLSSFRTSAQNKETIEELKKGMVDIVIGTHRLLSKDVVFKDLGLL 774

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ +      VL ++ATPIPRTL ++  G  D+S + E P  R PI
Sbjct: 775  IIDEEQRFGVTHKEKIKKLKNNVDVLTLSATPIPRTLHMSLAGIRDMSVLEEPPVDRVPI 834

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T +   N  + + E +   L+   + Y++  ++        RS+ E    + E    ++
Sbjct: 835  QTFVTEHND-EMIREAITRELARNGQVYYVYNRV--------RSIDEAAAHIQELVPDAN 885

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A  HG+M+  + E +M  F NG   +L++TT+IE G+D+ + + +IIE+A+ FGL+QL+
Sbjct: 886  VAYAHGQMAKRELEKIMCDFVNGEIDVLVSTTIIETGMDISNCNTMIIEDADRFGLSQLY 945

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR    +   LLY     L++ +  RLSV++   D   GF IA +DL+ R  G 
Sbjct: 946  QLRGRVGRSSRTAYAFLLYRRDKVLTEVAEKRLSVIREFADFGSGFKIAMKDLEIRGAGN 1005

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            +LG  Q G    +     L+  +L  A  + K I
Sbjct: 1006 VLGNSQHGHMAAVGYD--LYCKMLNQAVNNLKGI 1037


>gi|328467970|gb|EGF38997.1| transcription-repair coupling factor [Listeria monocytogenes 1816]
          Length = 1179

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 142/452 (31%), Positives = 240/452 (53%), Gaps = 19/452 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T+ Q 
Sbjct: 573  EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631  RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691  ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751  IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T +   N +  V E ++  L+   + Y++  ++E        S+ ++ + +      + 
Sbjct: 811  QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVE--------SITQKADEISAMVPDAR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+
Sbjct: 862  VATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+    +Y     L + +  RLS +K       GF IA  DL  R  G 
Sbjct: 922  QLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ILG +Q G    +     L+  +L+ A +  K
Sbjct: 982  ILGAQQHGFIDSVGFD--LYSQMLKEAIEAKK 1011


>gi|306992269|gb|ADN19251.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 451

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/455 (36%), Positives = 267/455 (58%), Gaps = 8/455 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 450


>gi|237745816|ref|ZP_04576296.1| transcription-repair coupling factor [Oxalobacter formigenes HOxBLS]
 gi|229377167|gb|EEO27258.1| transcription-repair coupling factor [Oxalobacter formigenes HOxBLS]
          Length = 1150

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 144/479 (30%), Positives = 231/479 (48%), Gaps = 19/479 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +W    ++        A ++  L  R+  +   G P  +     +    +  F 
Sbjct: 548  HTLGSGQWEKARQKAAQKIHDTAAELLDLYARRSMR--KGFPFPLTKNDYEAFADSFGFE 605

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI  +++DM+ +  M R++ GDVG GKT VAL A   AV  G Q  ++AP  +
Sbjct: 606  ETPDQAAAISAVMEDMTSEKPMDRLICGDVGFGKTEVALRAAFIAVMGGKQVALLAPTTL 665

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QH +  +    +  + +  ++    Q    + ++ +  G   I+IGTH L    + +
Sbjct: 666  LAEQHAQTFRDRFADWPVRISELSRFRTQKQVNQTIQGLEDGSVDIVIGTHKLLSKDVSF 725

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G    S I   P
Sbjct: 726  KRLGLVIIDEEHRFGVRQKEALKAIRAEVDVLTLTATPIPRTLGMALDGLRSFSIIATAP 785

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  IKT +   N    + E     L  G + Y++  ++E  +            +L  
Sbjct: 786  QKRLAIKTFVRSEND-SVIREACLRELKRGGQVYFLHNEVETIENRRV-----MLENLLP 839

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I + HG+M + D E VM  F      +L+ TT+IE GIDV +A+ +++  A+ FG
Sbjct: 840  E--ARIGVAHGQMHERDLEKVMRDFVAHRYNILLCTTIIETGIDVPNANTMVMHRADKFG 897

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV---LKNTEDGFLIAEEDLKQ 627
            LAQLHQLRGR+GR    +   LL +    LSK +  RL     ++    GF +A  DL+ 
Sbjct: 898  LAQLHQLRGRIGRSHHQAYAYLLVNDIQTLSKQAQRRLEAIRQMEELGSGFFLAMHDLEI 957

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE+LG +QSG  + +    +++  +L+ A +  K    + PD  +    +  I L+
Sbjct: 958  RGAGEVLGEEQSG--EMVEIGFQMYSDMLKEAVRAMKK--GEQPDYDAPFTTTTEINLH 1012


>gi|46906446|ref|YP_012835.1| transcription-repair coupling factor [Listeria monocytogenes serotype
            4b str. F2365]
 gi|226222843|ref|YP_002756950.1| transcription-repair coupling factor [Listeria monocytogenes
            Clip81459]
 gi|254825872|ref|ZP_05230873.1| transcription-repair coupling factor [Listeria monocytogenes FSL
            J1-194]
 gi|254854444|ref|ZP_05243792.1| transcription-repair coupling factor [Listeria monocytogenes FSL
            R2-503]
 gi|254933054|ref|ZP_05266413.1| transcription-repair coupling factor [Listeria monocytogenes HPB2262]
 gi|300766347|ref|ZP_07076306.1| transcription-repair coupling factor [Listeria monocytogenes FSL
            N1-017]
 gi|46879710|gb|AAT03012.1| transcription-repair coupling factor [Listeria monocytogenes serotype
            4b str. F2365]
 gi|225875305|emb|CAS04002.1| transcription-repair coupling factor [Listeria monocytogenes serotype
            4b str. CLIP 80459]
 gi|258607844|gb|EEW20452.1| transcription-repair coupling factor [Listeria monocytogenes FSL
            R2-503]
 gi|293584612|gb|EFF96644.1| transcription-repair coupling factor [Listeria monocytogenes HPB2262]
 gi|293595111|gb|EFG02872.1| transcription-repair coupling factor [Listeria monocytogenes FSL
            J1-194]
 gi|300512946|gb|EFK40034.1| transcription-repair coupling factor [Listeria monocytogenes FSL
            N1-017]
 gi|332310623|gb|EGJ23718.1| Transcription-repair-coupling factor [Listeria monocytogenes str.
            Scott A]
          Length = 1179

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 142/452 (31%), Positives = 240/452 (53%), Gaps = 19/452 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T+ Q 
Sbjct: 573  EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631  RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691  ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751  IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T +   N +  V E ++  L+   + Y++  ++E        S+ ++ + +      + 
Sbjct: 811  QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVE--------SITQKADEISAMVPDAR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+
Sbjct: 862  VATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+    +Y     L + +  RLS +K       GF IA  DL  R  G 
Sbjct: 922  QLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ILG +Q G    +     L+  +L+ A +  K
Sbjct: 982  ILGAQQHGFIDSVGFD--LYSQMLKEAIEAKK 1011


>gi|306992479|gb|ADN19356.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/454 (36%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992183|gb|ADN19208.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 451

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 168/455 (36%), Positives = 267/455 (58%), Gaps = 8/455 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAEM 450


>gi|324989584|gb|EGC21530.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK353]
          Length = 1167

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 147/452 (32%), Positives = 239/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     + +A  +  L    +  +  G   + +    ++   + P+  
Sbjct: 559 KLNDGRFQKSKQKVQHQVQDIADDLIKLYA--ERSQLKGFAFSADDSNQEEFDNDFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I+++ +DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 617 TEDQLRSIQEVKKDMESSRPMDRLLVGDVGFGKTEVAMRAAFKAVNNHKQVAVLVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  + VE+++    +A +++ LE++  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHYTNFKERFNDFAVNVEVLSRFRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIIIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 797 NRYPVQTYVLESNPT-VIREAVLREIDRGGQVYYLYNKVDTIE--------QKVSELREL 847

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H G
Sbjct: 848 IPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGSMQSGFID--SVGFEMYSQLLEEA 997


>gi|306992263|gb|ADN19248.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 168/454 (37%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|325981304|ref|YP_004293706.1| transcription-repair coupling factor [Nitrosomonas sp. AL212]
 gi|325530823|gb|ADZ25544.1| transcription-repair coupling factor [Nitrosomonas sp. AL212]
          Length = 1154

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 144/484 (29%), Positives = 234/484 (48%), Gaps = 23/484 (4%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K    +W    R+ +      A ++  L  ++  ++       ++            F 
Sbjct: 551  HKLGSGQWDKAKRKAMQQVRDTAAELLNLYAQRAAREGHT--FTLKQHDYDAFAEGFGFE 608

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AIK +++D++    M R++ GDVG GKT VAL A   AV  G Q  ++ P  +
Sbjct: 609  ETADQAAAIKAVIEDLTSGKPMDRLICGDVGFGKTEVALRAAFIAVADGKQVAVLVPTTL 668

Query: 333  LAQQHYEFIKKYT----QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            LA+QH++              + +  ++       + +A+  +A G+  IIIGTH L Q 
Sbjct: 669  LAEQHFQNFSDRFGLIADQWPVRIAELSRFRSAKEQTQAIAGLAKGEIDIIIGTHKLIQK 728

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             + +  L LVI+DE+HRFGV+Q+ +L +      VL +TATPIPRTL ++  G  D S I
Sbjct: 729  DVHFKNLGLVIIDEEHRFGVRQKEQLKKLRAEVDVLTLTATPIPRTLAMSLEGLRDFSII 788

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
               P  R  I+T +   + +  + E     L  G + Y++  ++        + ++E+  
Sbjct: 789  ATAPQRRLAIRTFVSGFS-MGIIREACLRELKRGGQIYFLHNEVSTI-----QLMLEKLT 842

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
             L     + I I HG+M + + E VM  F      +L+ TT+IE GID+  A+ I+I NA
Sbjct: 843  GLLPE--ARINIAHGQMPERELEHVMRDFYQQRFNILLCTTIIETGIDIPSANTILINNA 900

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY-----TRLSVLKNTEDGFLIAEE 623
              FGLAQLHQLRGRVGR    +   LL  P  +  +        +  ++    GF +A  
Sbjct: 901  HKFGLAQLHQLRGRVGRSHHQAYAYLLTPPEEALGAQAKKRLEAIQAMEELGSGFYLAMH 960

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            DL+ R  G +L   QSG  + +     L+ S+L+ A +  K    ++PD+    G +  I
Sbjct: 961  DLEIRGAGAVLSESQSGEMQEIGFS--LYSSMLDSAIQSLKQ--GKEPDMQHPLGVATEI 1016

Query: 684  LLYL 687
             L++
Sbjct: 1017 NLHV 1020


>gi|47093156|ref|ZP_00230931.1| transcription-repair coupling factor [Listeria monocytogenes str. 4b
            H7858]
 gi|47018463|gb|EAL09221.1| transcription-repair coupling factor [Listeria monocytogenes str. 4b
            H7858]
          Length = 1179

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 142/452 (31%), Positives = 240/452 (53%), Gaps = 19/452 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T+ Q 
Sbjct: 573  EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631  RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691  ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751  IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T +   N +  V E ++  L+   + Y++  ++E        S+ ++ + +      + 
Sbjct: 811  QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVE--------SITQKADEISAMVPDAR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+
Sbjct: 862  VATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+    +Y     L + +  RLS +K       GF IA  DL  R  G 
Sbjct: 922  QLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ILG +Q G    +     L+  +L+ A +  K
Sbjct: 982  ILGAQQHGFIDSVGFD--LYSQMLKEAIEAKK 1011


>gi|16799323|ref|NP_469591.1| transcription-repair coupling factor [Listeria innocua Clip11262]
 gi|16412675|emb|CAC95479.1| transcription-repair coupling factor [Listeria innocua Clip11262]
          Length = 1179

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 143/452 (31%), Positives = 239/452 (52%), Gaps = 19/452 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T  Q 
Sbjct: 573  EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSADDEMQREFEEAFPYQETDDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQHY
Sbjct: 631  RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHY 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K+  Q   I + +++    +  + + L+ + +G   I++GTH L    ++Y  L L+
Sbjct: 691  ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDIVVGTHRLLSKDVEYQDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751  VVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T +   N +  V E ++  L+   + Y++  ++E        S+ ++ + +      + 
Sbjct: 811  QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVE--------SITQKADEISAMVPDAR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+
Sbjct: 862  VATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+    +Y     L + +  RLS +K       GF IA  DL  R  G 
Sbjct: 922  QLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ILG +Q G    +     L+  +L+ A +  K
Sbjct: 982  ILGAQQHGFIDSVGFD--LYSQMLKEAIEAKK 1011


>gi|226943575|ref|YP_002798648.1| transcription-repair coupling factor [Azotobacter vinelandii DJ]
 gi|226718502|gb|ACO77673.1| transcription-repair coupling factor [Azotobacter vinelandii DJ]
          Length = 1149

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 152/476 (31%), Positives = 236/476 (49%), Gaps = 19/476 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
              +W    R+       +A ++  +    +     G          +    + PF  T  
Sbjct: 549  SEQWQRAKRKAAEQVRDVAAELLDIYA--RRAARAGFAFKDPATDYETFSASFPFEETPD 606

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            Q++AI  +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LAQQ
Sbjct: 607  QQAAIDAVRTDMLAPRPMDRLICGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQ 666

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            HY   +    +  + VE+++          A+  +A G+  I+IGTH L QD + +  L 
Sbjct: 667  HYNSFRDRFADWPVKVEVMSRFKSAKEVEGAIAALAEGKIDIVIGTHKLLQDDVSFKNLG 726

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L I+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R 
Sbjct: 727  LAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRL 786

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             ++T ++       + E L   L  G + Y++  +++  ++            L     +
Sbjct: 787  SVRTFVMEQQNT-LIREALLRELLRGGQVYYLHNEVKTIEK-----CARELAELVPE--A 838

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             IAI HG+M + + E VM  F +    +L+A+T+IE GIDV  A+ I+IE A+ FGLAQL
Sbjct: 839  RIAIGHGQMRERELEQVMGDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQL 898

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR    +   LL  P   +++++  RL  +   +D   GF++A  DL+ R  G
Sbjct: 899  HQLRGRVGRSHHQAYAYLLTPPRKQMTEDAQKRLEAIAGAQDLGAGFVLATHDLEIRGAG 958

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            E+LG  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 959  ELLGEGQSGQI--QAVGFTLYMEMLERAVKAIRK--GEQPNLEQPLGGGPDINLRV 1010


>gi|306992271|gb|ADN19252.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992277|gb|ADN19255.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/454 (36%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 449


>gi|325695766|gb|EGD37665.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK150]
          Length = 1167

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 147/452 (32%), Positives = 239/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     + +A  +  L    +  +  G   + +    ++   + P+  
Sbjct: 559 KLNDSRFQKSKQKVQHQVQDIADDLIKLYA--ERSQLKGFAFSADDSNQEEFDNDFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I+++ +DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 617 TEDQLRSIQEVKKDMESSRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  + VE+++    +A +++ LE++  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHYTNFKERFNDFAVNVEVLSRFRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIIIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 797 NRYPVQTYVLESNPT-VIREAVLREIDRGGQVYYLYNKVDTIE--------QKVSELREL 847

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H G
Sbjct: 848 IPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGSMQSGFID--SVGFEMYSQLLEEA 997


>gi|306992485|gb|ADN19359.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992487|gb|ADN19360.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/453 (36%), Positives = 267/453 (58%), Gaps = 8/453 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|91793030|ref|YP_562681.1| transcription-repair coupling factor [Shewanella denitrificans OS217]
 gi|91715032|gb|ABE54958.1| transcription-repair coupling factor [Shewanella denitrificans OS217]
          Length = 1179

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 150/477 (31%), Positives = 245/477 (51%), Gaps = 21/477 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  W    ++ +     +A ++  +  R+Q +    + I+ +     +  +  P+  T  
Sbjct: 576  NETWAKAKKKAIEKIRDVAAELLDVYARRQSRPGEALAIDAD--EYAQFAQGFPYEETVD 633

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            QESAI  +L DM     M R++ GDVG GKT VA+ A   AV AG Q V++ P  +LAQQ
Sbjct: 634  QESAIIAVLNDMQAPTSMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQ 693

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            HYE  K    +  + +E+++       + + L+ ++ G+  I+IGTH L Q   ++  L 
Sbjct: 694  HYENFKDRFADWPVEIEVMSRFRSAKEQEQVLQSLSEGKVDIVIGTHKLLQSEAKFVDLG 753

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL +   G  D+S I   PA R 
Sbjct: 754  LLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRL 813

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
             +KT +   ++   + E L   +  G + Y++   +E  ++            L +    
Sbjct: 814  AVKTFVREYHQ-ATIREALLREILRGGQVYYLHNNVETIEKC--------AQDLRDLLPE 864

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + +   HG+M + D E VM  F +    +L+ TT+IE GIDV  A+ I+I+ A+ FGLAQ
Sbjct: 865  ARVVTGHGQMRERDLEKVMADFYHQRFNVLVCTTIIETGIDVPSANTIVIDRADKFGLAQ 924

Query: 576  LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR---LSVLKNTEDGFLIAEEDLKQRKE 630
            LHQLRGRVGR    +   ++  P   +S ++  R   +  L+    GF++A +DL+ R  
Sbjct: 925  LHQLRGRVGRSHHQAYAYMITPPIKLISTDARKRLEAIDALEELGAGFMLATQDLEIRGA 984

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            GE+LG +QSG    +     L+  +LE A    K    ++P L  +      + L +
Sbjct: 985  GELLGDEQSGHISKIGFS--LYMEMLESAVSALKE--GKEPSLAYMLNAQCEVDLRI 1037


>gi|308171946|ref|YP_003918651.1| transcription-repair coupling factor [Bacillus amyloliquefaciens DSM
            7]
 gi|307604810|emb|CBI41181.1| transcription-repair coupling factor [Bacillus amyloliquefaciens DSM
            7]
 gi|328910016|gb|AEB61612.1| transcription-repair coupling factor [Bacillus amyloliquefaciens LL3]
          Length = 1177

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 136/449 (30%), Positives = 236/449 (52%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++     + +A  +  L   ++     G   + + ++ ++     P+  T  Q 
Sbjct: 572  EWKRVKKKVENSVQDIADDLIKLYAEREA--SKGYAFSPDHEMQRQFEAAFPYQETDDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  ILAQQHY
Sbjct: 630  RSIQEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I +  Q+  I + +++    +    + ++ + +G   I+IGTH L    + Y  L L+
Sbjct: 690  ETIMERFQDYPINIGLLSRFRTRKESNETIKGLKNGTVDIVIGTHRLLSKDVVYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  L+ G + Y++  ++++ +        +  + L     + +
Sbjct: 810  QTYVVEYNG-ALVREAIERELARGGQVYFLYNRVDDIE-----RKADEISMLVPD--AKV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++ + ESVM +F  G   +L++TT+IE G+D+ + + +I+ + +  GL+QL+Q
Sbjct: 862  AYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDKMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +Q G    +     L+  +L+ A ++
Sbjct: 982  LGAQQHGFIDSVGFD--LYSQMLKEAIEE 1008


>gi|167629346|ref|YP_001679845.1| transcription-repair coupling factor [Heliobacterium modesticaldum
            Ice1]
 gi|167592086|gb|ABZ83834.1| transcription-repair coupling factor [Heliobacterium modesticaldum
            Ice1]
          Length = 1247

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 138/451 (30%), Positives = 230/451 (50%), Gaps = 17/451 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++       LAG +  L   ++ K   G   + +    ++     P+  T  Q 
Sbjct: 584  EWHKVKQKVKDSVRELAGDLLKLYAARESK--PGYAYSADTPWQKEFEEAFPYEETPDQA 641

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I ++  DM +   M R+L GDVG GKT VA+ A   AV+ G Q  I+ P  ILAQQHY
Sbjct: 642  RSIAEVKTDMEKAKAMDRLLCGDVGYGKTEVAIRAAFKAVQDGKQVAILVPTTILAQQHY 701

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++      + V++++       ++ +LE +  G+  I+IGTH L  + + +  L L+
Sbjct: 702  NTFRERFSGYPVRVDVLSRFRSPKEQKASLEGLKSGEVDIVIGTHRLVSNDVSFKDLGLL 761

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+        VL ++ATPIPRTL ++ +G  D+S I   P  R P+
Sbjct: 762  IIDEEQRFGVAHKEKIKHLKENVDVLTLSATPIPRTLHMSLVGLRDMSIIETPPEDRYPV 821

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E ++  L+ G + Y++  +IE+        +     +L     + I
Sbjct: 822  QTYVVEYN-PELIREAVRRELNRGGQVYYVRNRIEDLD-----RIARDLGALVPD--ARI 873

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E VM  F  G   +L+ TT+IE G+D+ + + +I++ A+  GL+QL+Q
Sbjct: 874  VVGHGKMREDQLEQVMLDFLEGEYDILVCTTIIETGLDIPNVNTLIVDGADLMGLSQLYQ 933

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ +  RL  ++       GF IA  DL+ R  G +
Sbjct: 934  LRGRVGRSNRLAYAFFTYRKDKVLTEVAEKRLHAIREFTELGSGFKIAMRDLEIRGVGNL 993

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            LG +Q G         +L+  LLE A ++ K
Sbjct: 994  LGPEQHGQM--ASVGFDLYCRLLEEAIQELK 1022


>gi|306992199|gb|ADN19216.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992201|gb|ADN19217.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992203|gb|ADN19218.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992205|gb|ADN19219.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992207|gb|ADN19220.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992213|gb|ADN19223.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992215|gb|ADN19224.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992265|gb|ADN19249.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 168/453 (37%), Positives = 267/453 (58%), Gaps = 8/453 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|33152114|ref|NP_873467.1| transcription repair coupling factor [Haemophilus ducreyi 35000HP]
 gi|33148336|gb|AAP95856.1| transcription repair coupling factor [Haemophilus ducreyi 35000HP]
          Length = 1160

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 154/480 (32%), Positives = 247/480 (51%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    ++ +     +A ++  +  +++ +   G     +     +   + PF 
Sbjct: 556  HKLGSETWAKNRQKAVEKIHDIAAELLDIYAKRETQ--KGFKFAYDRDAFMQFSHSFPFE 613

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T+ Q+ AI  ++ DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +
Sbjct: 614  ETEDQKLAIHAVISDMCQAKAMDRLICGDVGFGKTEVAMRATYLAVENHKQVAVLVPTTL 673

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHYE  K    N  I +E+++       ++  L R+A  +  I+IGTH L QD++++
Sbjct: 674  LAQQHYEDFKDRFANYPINIEVLSRFKTAKEQKDILARVATHKVDILIGTHKLLQDNVKF 733

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            + L L+++DE+HRF V+Q+ K+ Q      +L +TATPIPRTL +   G  D+S I   P
Sbjct: 734  HDLGLLVIDEEHRFSVRQKEKIKQLRANIDILTLTATPIPRTLNMALNGMRDLSIIASPP 793

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            + R  IKT +   +    + E +   +  G + Y++   +   +    +        L  
Sbjct: 794  SRRLTIKTFVCQQDDT-IIKEAILREILRGGQVYYLHNDVATIENCATK-----LAELVP 847

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I I HG+M + D E VM  F +    LL+ +T+IE GIDV  A+ IIIE A  FG
Sbjct: 848  E--ARIVIGHGQMRERDLERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIEQANKFG 905

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL   P  L+K++  RL  + + ++   GF++A  DL+ 
Sbjct: 906  LAQLHQLRGRVGRSHHQAYAYLLTPHPKTLTKDAQQRLEAISSIDNLGAGFVLATHDLEI 965

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +     +   LL+ A +  ++ L  +P L  +    + I L +
Sbjct: 966  RGAGELLGAEQSGQIESIGFSLYMD--LLKNAVQALQNGL--EPTLDEITQSQVEIELRI 1021


>gi|325686483|gb|EGD28512.1| transcription-repair coupling factor [Streptococcus sanguinis SK72]
          Length = 1167

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 147/452 (32%), Positives = 238/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     + +A  +  L    +  +  G   + +    ++   + P+  
Sbjct: 559 KLNDGRFQKSKQKVQHQVQDIADDLIKLYA--ERSQLKGFAFSADDSNQEEFDNDFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I+++ +DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 617 TEDQLRSIQEVKKDMESSRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  + VE+++    +A +++ LE++  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHYTNFKERFNDFAVNVEVLSRFRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIIIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 797 NRYPVQTYVLESNPT-VIREAVLREIDRGGQVYYLYNKVDTIE--------QKVSELREL 847

Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H G
Sbjct: 848 IPEVSIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGSMQSGFID--SVGFEMYSQLLEEA 997


>gi|87121321|ref|ZP_01077211.1| Transcription-repair coupling factor [Marinomonas sp. MED121]
 gi|86163478|gb|EAQ64753.1| Transcription-repair coupling factor [Marinomonas sp. MED121]
          Length = 1137

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 154/485 (31%), Positives = 238/485 (49%), Gaps = 18/485 (3%)

Query: 198 SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
              S     +  H P  K    +W+   ++        A ++  +  +++ ++      +
Sbjct: 521 QLISRYTGADEDHAPLHKLGTEKWSQAKQKAAEKARDTAAELLEIYAKRESRQG--HAFS 578

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
              +      +  PF  T  Q+ AI  ++QDM  K  M R++ GDVG GKT VA+ A   
Sbjct: 579 KPDQEYALFSQGFPFEETPDQQLAISAVIQDMVSKKPMDRLVCGDVGFGKTEVAMRAAFM 638

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AV+ G Q  ++ P  +LAQQHYE       +  I VE+++          A+ER+  G+A
Sbjct: 639 AVQGGKQVAVLVPTTLLAQQHYENFCDRFADWPIEVELLSRFRSGKQTNAAIERLEQGKA 698

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I++GTH L Q  I+Y  L LVI+DE+HRFGV+Q+ +     +   +L +TATPIPRTL 
Sbjct: 699 DIVVGTHKLIQGDIKYANLGLVIIDEEHRFGVKQKDQFKALRSEVDILTLTATPIPRTLN 758

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           ++  G  D+S I   PA R  + T +   +    V E +   L  G + Y++   ++   
Sbjct: 759 MSLSGIRDLSIIATPPAKRLSVNTFVKKKDN-HTVKEAILRELHRGGQVYFLHNDVQTI- 816

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                   E    L       I I HG+M + D E VM  F +    +L+ +T+IE GID
Sbjct: 817 ----AKAAEELAELIPE--GRILIGHGQMRERDLEQVMSDFYHKRANILVCSTIIETGID 870

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK-- 612
           + +A+ III  A+ FGLAQLHQLRGRVGR    +   LL      ++K++  RL  ++  
Sbjct: 871 IPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEDRNVTKDAQKRLEAIQLA 930

Query: 613 -NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
                GF +A  DL+ R  GE+LG  QSG  +       L   +L+ A K  +     D 
Sbjct: 931 DTLGAGFTLATHDLEIRGTGELLGEGQSGHIEH--VGFSLFMEMLDRAVKSLQQGEAPDV 988

Query: 672 DLTSV 676
           D+++ 
Sbjct: 989 DISTP 993


>gi|187477560|ref|YP_785584.1| transcription-repair coupling factor [Bordetella avium 197N]
 gi|115422146|emb|CAJ48670.1| transcription-repair coupling factor [Bordetella avium 197N]
          Length = 1145

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 144/473 (30%), Positives = 225/473 (47%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++        A ++  L  ++  ++      N+     +       F  T  Q 
Sbjct: 552  QWDKARKKAAKQVRDTAAELLALYAQRAAREG--YAFNLPLSDYESFAEGFGFEETVDQS 609

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH 
Sbjct: 610  AAIQAVIMDMTSGKPMDRLVCGDVGFGKTEVALRAAFLAVANGKQVALLCPTTLLAEQHA 669

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + V  ++          A+E I  G+  I+IGTH +    +++ +L LV
Sbjct: 670  QTFSDRFADWPVRVVELSRFRSAKEVAAAVEGINDGRVDIVIGTHKILSKEVRFKRLGLV 729

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I   P  R  I
Sbjct: 730  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAI 789

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +   +    + E L   L  G +AY++  ++E        +   R   L     + I
Sbjct: 790  KTFVRREDG-STIREALLRELKRGGQAYFLHNEVETIH-----NRRARLEELVPE--ARI 841

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQ
Sbjct: 842  GVAHGQMPERELEQVMKGFYQQRYNVLLCTTIIETGIDVPSANTIVIHRADRFGLAQLHQ 901

Query: 579  LRGRVGRGEEISSCILLYHPPLSKNSY-----TRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL     +  +        +  ++    GF +A  DL+ R  GEI
Sbjct: 902  LRGRVGRSHHQAYAYLLTPGEDAITANAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEI 961

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG  QSG          +++ +L  A +  K    ++PDL +    +  + L+
Sbjct: 962  LGDSQSG--NIQEVGFSMYNEMLSEAVRALKS--GEEPDLDAPFNLACEVNLH 1010


>gi|332364170|gb|EGJ41947.1| transcription-repair coupling factor [Streptococcus sanguinis SK49]
          Length = 1167

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 146/452 (32%), Positives = 239/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     + +A  +  L    +  +  G   + +    ++   + P+  
Sbjct: 559 KLNDGRFHKSKQKVQHQVQDIADDLIKLYA--ERSQLKGFAFSADDSNQEEFDNDFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I+++ +DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 617 TEDQLRSIQEVKKDMESSRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  + VE+++    ++ +++ LE++  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHYTNFKERFNDFAVNVEVLSRFRSKSEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIIIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 797 NRYPVQTYVLESNPT-VIREAVLREIDRGGQVYYLYNKVDTIE--------QKVSELREL 847

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H G
Sbjct: 848 IPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGSMQSGFID--SVGFEMYSQLLEEA 997


>gi|227528907|ref|ZP_03958956.1| transcription-repair coupling factor [Lactobacillus vaginalis ATCC
            49540]
 gi|227351181|gb|EEJ41472.1| transcription-repair coupling factor [Lactobacillus vaginalis ATCC
            49540]
          Length = 1170

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 141/446 (31%), Positives = 235/446 (52%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R   +  E +A ++  L  +++ +   G     +  + ++   N P+S T+ Q 
Sbjct: 569  EWAKTKRRVASKVEDIADELVDLYAKRETE--KGYAFPKDDYLQKQFDANFPYSETRDQL 626

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VAL A+  AV  G Q   + P  +LAQQHY
Sbjct: 627  RSIAEIKEDMEKAKPMDRLLVGDVGYGKTEVALRAIFKAVTGGKQVAFLVPTTVLAQQHY 686

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +KK  +   I + +++    +   ++  + +A G   +++GTH +    + +  L L+
Sbjct: 687  DTMKKRFEGFPIEIALMSRFKTRKELKETEKGLADGTVDVVVGTHRILSKDVHFKDLGLL 746

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ LG  D+S +   PAGR PI
Sbjct: 747  IVDEEQRFGVKHKEKLKQLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPI 806

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + + +   +  G + Y++  ++      +    V R   L     + I
Sbjct: 807  QTYVMEQNS-GAIRDGILREMQRGGQVYYLHNRV-----MDIEETVARLQQLVPE--ARI 858

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              I G+MS+   ESV+  F  G   +L+ T++IE G+D+ + + + +ENA+  GLAQL+Q
Sbjct: 859  GYIDGQMSENQLESVLYEFIQGGYDVLVTTSIIETGVDIPNVNTLFVENADRMGLAQLYQ 918

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            +RGR+GR   ++    +Y P   L++    RL+ +++      GF IA  DL  R  G +
Sbjct: 919  IRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLSIRGAGNL 978

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G    +     L+ S+L  A
Sbjct: 979  LGKQQHGFIDSVGYD--LYSSMLSDA 1002


>gi|254832465|ref|ZP_05237120.1| transcription-repair coupling factor [Listeria monocytogenes 10403S]
          Length = 1179

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 142/452 (31%), Positives = 240/452 (53%), Gaps = 19/452 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T+ Q 
Sbjct: 573  EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631  RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691  ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751  IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T +   N +  V E ++  L+   + Y++  ++E        S+ ++ + +      + 
Sbjct: 811  QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVE--------SITQKADEISAMVPDAR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+
Sbjct: 862  VATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+    +Y     L + +  RLS +K       GF IA  DL  R  G 
Sbjct: 922  QLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ILG +Q G    +     L+  +L+ A +  K
Sbjct: 982  ILGAQQHGFIDSVGFD--LYSQMLKEAIEAKK 1011


>gi|306992359|gb|ADN19296.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992361|gb|ADN19297.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992363|gb|ADN19298.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/454 (36%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 EFANGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|291614691|ref|YP_003524848.1| transcription-repair coupling factor [Sideroxydans lithotrophicus
            ES-1]
 gi|291584803|gb|ADE12461.1| transcription-repair coupling factor [Sideroxydans lithotrophicus
            ES-1]
          Length = 1190

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 147/479 (30%), Positives = 234/479 (48%), Gaps = 19/479 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    R  +      A ++  +  ++  +K     +       +       F 
Sbjct: 591  HKLGSGAWDKAKRRAMQQVRDTAAELLNIYAQRATRKGHAFKLTYHD--YEAFAAGFGFE 648

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI+ +L D+     M R++ GDVG GKT VAL A   A   G Q  ++ P  +
Sbjct: 649  ETADQAAAIEAVLLDLQSGKPMDRLICGDVGFGKTEVALRAAFVAASEGKQVAVLVPTTL 708

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QH++       +  I +  ++         +AL+ +A G+  I+IGTH L Q  +++
Sbjct: 709  LAEQHFQNFSTRFADWPIRIAELSRFRSAKEVTQALKDLADGKLDIVIGTHKLIQKDVKF 768

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            + L LVI+DE+HRFGVQQ+ KL        VL +TATPIPRTL ++  G  D S I   P
Sbjct: 769  HNLGLVILDEEHRFGVQQKEKLKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIATAP 828

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  IKT +   ++   + E +   L  G + Y++  +++        +++E+  +L  
Sbjct: 829  QRRLSIKTFVSGFSQ-GVIREAVLRELKRGGQVYFLHNEVDTI-----ANMLEKLETLLP 882

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I + HG+M + D E+VM  F +    +L+ +T+IE GIDV  A+ II+  A+ FG
Sbjct: 883  E--ARIRVAHGQMGERDLEAVMRDFHHQRFNVLLCSTIIETGIDVPTANTIIMNRADRFG 940

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY-----TRLSVLKNTEDGFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL        +        +  ++    GF +A  DL+ 
Sbjct: 941  LAQLHQLRGRVGRSHHQAYAYLLVDSMDGLTAQAKKRLEAIQAMEQLGSGFFLAMHDLEI 1000

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE+LG  QSG  + +     L++ +L  A    K    ++PD+T   G +  I L+
Sbjct: 1001 RGAGEVLGESQSGEMQEIGFS--LYNDMLAAAIASLKQ--GKEPDMTHPLGVTTEINLH 1055


>gi|206900533|ref|YP_002251220.1| transcription-repair coupling factor [Dictyoglomus thermophilum
           H-6-12]
 gi|206739636|gb|ACI18694.1| transcription-repair coupling factor [Dictyoglomus thermophilum
           H-6-12]
          Length = 1070

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 160/455 (35%), Positives = 246/455 (54%), Gaps = 17/455 (3%)

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            +  +W    R+     + +A ++  L +  Q +   G   + +  + +++  + P+  T
Sbjct: 495 LESHQWEETKRKVKESAKEIAEEL--LKVYAQRELTEGFAFSPDSPLQEELEASFPYVET 552

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + Q  A+K+I +DM  K  M R+L GDVG GKT +AL A   AV  G Q  I+ P  ILA
Sbjct: 553 EDQIKALKEIKRDMESKKPMERVLIGDVGFGKTELALRASFKAVLDGKQVAILVPTTILA 612

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            QH++  ++  +   + VEI++   P++ +++ +ERI  G+  IIIGTH + Q  +++  
Sbjct: 613 YQHWKVFRERLEVFPVNVEILSRLKPKSEQKRIIERIRKGEIDIIIGTHRILQKDVEFKD 672

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+IVDE+HRFGV Q+    +K     +L ++ATPIPRTL +   G    S +   P  
Sbjct: 673 LGLIIVDEEHRFGVLQKESFKKKYPHVDILYLSATPIPRTLSMVLSGIRQFSVLETPPEN 732

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R PI+T ++  N  + + E ++  L  G + Y++C  IE  ++       E    L    
Sbjct: 733 RLPIQTFVVEYN-PEIIQEGIRRELERGGQVYYVCNDIERLEKIK-----EELTKLVPEA 786

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           T SIA  HG+M D +   VM +F +G   +LIATT+IE GIDV +A+ + +ENAEH GLA
Sbjct: 787 TYSIA--HGKMDDEELTEVMSNFYDGKIDVLIATTIIESGIDVPNANTLFVENAEHMGLA 844

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
           QL+QLRGR+GR  + +    L+ P   LS +S  RL  LK       G  +A  DL+ R 
Sbjct: 845 QLYQLRGRIGRSYKQAYAYFLHAPLKKLSLDSIKRLEALKEFSSLGSGLRLALRDLEIRG 904

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            G+ILG +Q G          L+  LLE A  + K
Sbjct: 905 AGKILGKEQHGHIN--SVGFYLYLQLLEEAINELK 937


>gi|323350835|ref|ZP_08086494.1| transcription-repair coupling factor [Streptococcus sanguinis
           VMC66]
 gi|322123009|gb|EFX94712.1| transcription-repair coupling factor [Streptococcus sanguinis
           VMC66]
          Length = 1167

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 147/452 (32%), Positives = 239/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     + +A  +  L    +  +  G   + +    ++   + P+  
Sbjct: 559 KLNDGRFQKSKQKVQHQVQDIADDLIKLYA--ERSQLKGFAFSADDSNQEEFDNDFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I+++ +DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 617 TEDQLRSIQEVKKDMESSRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  + VE+++    +A +++ LE++  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHYTNFKERFNDFAVNVEVLSRFRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIIIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 797 NRYPVQTYVLESNPT-VIREAVLREIDRGGQVYYLYNKVDTIE--------QKVSELREL 847

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H G
Sbjct: 848 IPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGSMQSGFID--SVGFEMYSQLLEEA 997


>gi|313902509|ref|ZP_07835910.1| transcription-repair coupling factor [Thermaerobacter subterraneus
            DSM 13965]
 gi|313467195|gb|EFR62708.1| transcription-repair coupling factor [Thermaerobacter subterraneus
            DSM 13965]
          Length = 1196

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 139/451 (30%), Positives = 230/451 (50%), Gaps = 17/451 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    +        +AG++  L   +Q     G   + +    ++     P+  T  Q 
Sbjct: 587  EWNKVKQRVKESVREMAGELLALYAARQS--VRGHAFSPDTPWQRQFEDAFPYQETPDQL 644

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  I  DM +   M R+L GDVG GKT VA+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 645  AAIAAIKADMERPVPMDRLLVGDVGFGKTEVAMRAAFKAVQDGKQVAVLVPTTVLAYQHE 704

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+      + +  ++     A + + L  +A G   I+IGTH L Q  +++  L L+
Sbjct: 705  RTFKERFAPFPVTIRTLSRFASPAEQAEILTGLAQGTVDIVIGTHRLVQPDVRFKDLGLL 764

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV  + +L Q      VL ++ATPIPRTL +   G  D+S+I   P  R P+
Sbjct: 765  IIDEEHRFGVAHKERLKQLKQNVDVLTLSATPIPRTLHMALAGIRDLSRIDTPPENRFPV 824

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  +    V + ++  L  G + +++  +++         V  R   L     +  
Sbjct: 825  QTFVVEWHE-SLVRDAIQRELRRGGQVFYVHNRVQSIHA-----VRRRLERLLPE--ARF 876

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ + E VM  F  G   +L+ TT+IE G+D+ + + +I+E+A+  GLAQL+Q
Sbjct: 877  AVAHGQMAEGELERVMVDFMEGKADVLVCTTIIESGLDIPNVNTLIVEDADRMGLAQLYQ 936

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR + ++     Y     L++++  RL  +K+  +   GF +A  DL+ R  G +
Sbjct: 937  LRGRVGRSDRVAYAYFTYRRDKVLTEDAQKRLQAIKDFTELGAGFKLALRDLEIRGAGNL 996

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            LG +Q G    L    +L+  LLE A  + +
Sbjct: 997  LGAEQHGFM--LSVGFDLYTQLLEEAVNELR 1025


>gi|306992439|gb|ADN19336.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 166/452 (36%), Positives = 265/452 (58%), Gaps = 8/452 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            F NG   +L++TTVIEVG++V +A+++I+EN
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVEN 447


>gi|306992337|gb|ADN19285.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992343|gb|ADN19288.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992349|gb|ADN19291.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992351|gb|ADN19292.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992367|gb|ADN19300.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992369|gb|ADN19301.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/453 (36%), Positives = 267/453 (58%), Gaps = 8/453 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  KDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 FANGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992235|gb|ADN19234.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/451 (37%), Positives = 265/451 (58%), Gaps = 8/451 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LTQK 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           F NG   +L++TTVIEVG++V +A+++I+EN
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVEN 446


>gi|47096207|ref|ZP_00233806.1| transcription-repair coupling factor [Listeria monocytogenes str.
            1/2a F6854]
 gi|224500335|ref|ZP_03668684.1| transcription-repair coupling factor [Listeria monocytogenes Finland
            1988]
 gi|254901001|ref|ZP_05260925.1| transcription-repair coupling factor [Listeria monocytogenes J0161]
 gi|254913931|ref|ZP_05263943.1| transcription-repair coupling factor [Listeria monocytogenes J2818]
 gi|47015455|gb|EAL06389.1| transcription-repair coupling factor [Listeria monocytogenes str.
            1/2a F6854]
 gi|293591949|gb|EFG00284.1| transcription-repair coupling factor [Listeria monocytogenes J2818]
          Length = 1179

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 142/452 (31%), Positives = 240/452 (53%), Gaps = 19/452 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T+ Q 
Sbjct: 573  EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631  RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691  ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751  IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T +   N +  V E ++  L+   + Y++  ++E        S+ ++ + +      + 
Sbjct: 811  QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVE--------SITQKADEISAMVPDAR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+
Sbjct: 862  VATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+    +Y     L + +  RLS +K       GF IA  DL  R  G 
Sbjct: 922  QLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ILG +Q G    +     L+  +L+ A +  K
Sbjct: 982  ILGAQQHGFIDSVGFD--LYSQMLKEAIEAKK 1011


>gi|319945976|ref|ZP_08020225.1| transcription-repair coupling factor [Streptococcus australis ATCC
           700641]
 gi|319747784|gb|EFW00029.1| transcription-repair coupling factor [Streptococcus australis ATCC
           700641]
          Length = 1170

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 144/454 (31%), Positives = 240/454 (52%), Gaps = 19/454 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G     + +  +   +  P+  
Sbjct: 559 KLNDGRFQKAKQKVRQEVEDIADDLIQLYA--ERSQLQGFAFTPDDENQEAFDQAFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV+   Q  ++ P  +L
Sbjct: 617 TDDQIRSIQEIKKDMESSSPMDRLLVGDVGFGKTEVAMRAAFKAVKDHKQVAVLVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  +   + V++++    +A +++ LE++  GQ  I+IGTH L    +++ 
Sbjct: 677 AQQHYANFKERFEAFPVEVDVLSRFRSRAEQKETLEKLKKGQVDILIGTHRLLSKDVEFS 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIVIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + ++  +  G + Y++  +++  +        ++ + L E 
Sbjct: 797 NRYPVQTYVLETNPT-IIRDAIRREMDRGGQVYYLYNKVDTIE--------QKVSELQEL 847

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 848 VPEASIGFVHGQMSEVRLENTLMDFIEGEYDILVTTTIIETGVDIPNANTLFIENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLMYRPDKTLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           R  G ILG  QSG         E++  LLE A +
Sbjct: 968 RGAGNILGASQSGFID--SVGFEMYSQLLEAAIE 999


>gi|306992339|gb|ADN19286.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/454 (36%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  KDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 FANGKIDILVSTTVIEVGVNVPNATVMIVENAEM 449


>gi|33602793|ref|NP_890353.1| transcription-repair coupling factor [Bordetella bronchiseptica RB50]
 gi|33577235|emb|CAE35792.1| transcription-repair coupling factor [Bordetella bronchiseptica RB50]
          Length = 1151

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 145/473 (30%), Positives = 227/473 (47%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  ++  ++       +     +       F  T  Q 
Sbjct: 558  QWDKARRKAARQVRDTAAELLALYAQRAAREG--YAFKLPMSDYEAFAEGFGFEETPDQA 615

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH 
Sbjct: 616  AAIQAVIMDMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVANGKQVALLCPTTLLAEQHA 675

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + V  ++          A+E I  G+  I+IGTH +    +++ +L LV
Sbjct: 676  QTFSDRFADWPVRVVELSRFRSAKEVAAAVEGINDGRVDIVIGTHKILSKDVRFKRLGLV 735

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I   P  R  I
Sbjct: 736  IIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAI 795

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +   +    + E L   L  G + Y++  ++E        +   R   L     + I
Sbjct: 796  KTFVRREDG-STIREALLRELKRGGQVYFLHNEVETIH-----NRRARLEELVPE--ARI 847

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F      +L+ TT+IE GID+  A+ I+I  A+ FGLAQLHQ
Sbjct: 848  AVAHGQMPERELEQVMKGFYQQRHNVLLCTTIIETGIDIPTANTIVIHRADRFGLAQLHQ 907

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTR---LSVLKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL      ++ N+  R   +  ++    GF +A  DL+ R  GEI
Sbjct: 908  LRGRVGRSHHQAYAYLLTPGEDAITNNAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEI 967

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG  QSG          +++ +L  A +  K    ++PDL +    +  + L+
Sbjct: 968  LGDSQSG--NIQEVGFSMYNEMLNEAVRALKA--GEEPDLDAPFNLACEVNLH 1016


>gi|306992443|gb|ADN19338.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992445|gb|ADN19339.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 166/451 (36%), Positives = 265/451 (58%), Gaps = 8/451 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           F NG   +L++TTVIEVG++V +A+++I+EN
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVEN 446


>gi|306992325|gb|ADN19279.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992327|gb|ADN19280.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/455 (36%), Positives = 267/455 (58%), Gaps = 8/455 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAEM 450


>gi|326202452|ref|ZP_08192321.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM
            2782]
 gi|325987570|gb|EGD48397.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM
            2782]
          Length = 1174

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 139/451 (30%), Positives = 237/451 (52%), Gaps = 21/451 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW           + LA ++  L  ++Q     G     +    ++     P+  T  Q 
Sbjct: 576  EWAKTKNRVKESLQQLAAELIKLYAQRQSA--KGHAFCEDTVWQRQFEELFPYQETDDQL 633

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I +I +DM  +  M R+L GDVG GKT VA+ A+  +V  G Q   +AP  ILAQQ Y
Sbjct: 634  KCIDEIKKDMESERLMDRLLCGDVGYGKTEVAIRAVFKSVMDGKQVAYLAPTTILAQQLY 693

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  KK   +  + V++++     A ++K ++ +  G   I+IGTH L Q  I++  L L+
Sbjct: 694  ENFKKRMSDFPVTVDVMSRFRTPAEQKKIVKSVKAGNTDILIGTHRLLQKDIEFKDLGLL 753

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV  + KL        VL +TATPIPRTL ++ +G  DIS + + P  R P+
Sbjct: 754  VVDEEQRFGVTHKEKLKTLKPNVDVLTLTATPIPRTLHMSLVGIRDISVLEDPPEERYPV 813

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
            +T ++  N ++ + + +   ++   + +++  ++   + K    R+++           +
Sbjct: 814  QTYVMEYN-MELIRDGIIREMARNGQVFYMYNRVRGIDLKAQEIRTMIPE---------A 863

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             +A+ HG+M++ + E VM  F NG   +L+ TT+IE G+D+ + + I++E+A+  GL+QL
Sbjct: 864  RVAVAHGQMNEKELEDVMYGFINGEYDVLVCTTIIESGLDMPNVNTIVVEDADRMGLSQL 923

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
            +Q+RGRVGR   ++   + Y     LS+ +  RL  +K       GF IA  DL+ R  G
Sbjct: 924  YQIRGRVGRSNRLAYAYITYKKDKVLSEVAEKRLQAIKEFTEFGSGFRIAMRDLEIRGAG 983

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
             +LG +Q G  +      E++  LL+ A ++
Sbjct: 984  NLLGPEQHGHLET--VGYEMYCKLLDEAVQE 1012


>gi|306992295|gb|ADN19264.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992317|gb|ADN19275.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992321|gb|ADN19277.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992323|gb|ADN19278.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/454 (36%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992287|gb|ADN19260.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/455 (36%), Positives = 267/455 (58%), Gaps = 8/455 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAEM 450


>gi|34496601|ref|NP_900816.1| transcription-repair coupling factor [Chromobacterium violaceum
           ATCC 12472]
 gi|34102455|gb|AAQ58821.1| transcription-repair coupling factor [Chromobacterium violaceum
           ATCC 12472]
          Length = 1130

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 145/449 (32%), Positives = 227/449 (50%), Gaps = 15/449 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  Q     G    +             F  T  Q +AI+ ++QDM     M R++ G
Sbjct: 558 LNLYAQRAAREGHSFTLSHADYAAFAAGFGFEETPDQATAIEAVIQDMCSGKPMDRLVCG 617

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VAL A   AV  G Q  ++ P  +LA+QH++       +  + +  ++    
Sbjct: 618 DVGFGKTEVALRAAFVAVMGGKQVAVLVPTTLLAEQHFQNFSDRFADWPVRIAELSRFRS 677

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               + AL  +A G   I+IGTH L Q  + +  L LVI+DE+HRFGV+Q+ +L +    
Sbjct: 678 GKETKAALAGLADGGVDIVIGTHKLVQPDVAFKNLGLVIIDEEHRFGVRQKEQLKRLRAN 737

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL +TATPIPRTL +   G  D S I   P+ R  +KT + P++    V E +   L 
Sbjct: 738 VDVLTLTATPIPRTLSMALEGLRDFSAIATAPSRRLAVKTFVSPLSN-GVVREAVLRELK 796

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  +++  +     ++ E+   L     + I + HG++ + + E VM  F   
Sbjct: 797 RGGQVFFLHNEVDTIE-----NMREKLAELIPE--ARIGVAHGQLRERELEQVMRDFLQQ 849

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              LL+ +T+IE GID+ +A+ I+I  A+ FGLAQLHQLRGRVGR    +   LL    +
Sbjct: 850 RFNLLLCSTIIETGIDIPNANTILINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPDGM 909

Query: 601 SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           ++++  RL  ++       GF +A  DL+ R  GE+LG  QSG  +       L   +L+
Sbjct: 910 TRDAQKRLEAIQLSGELGAGFYLAMHDLEIRGAGEVLGEGQSG--EMQEVGFSLFTEMLK 967

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLY 686
            A +D K    + PDL +  G +  I L+
Sbjct: 968 QAVRDLKK--GRAPDLDAPLGVTTEINLH 994


>gi|306992395|gb|ADN19314.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992397|gb|ADN19315.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992399|gb|ADN19316.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/453 (36%), Positives = 267/453 (58%), Gaps = 8/453 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  KDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992309|gb|ADN19271.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/454 (36%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAEM 449


>gi|319943635|ref|ZP_08017916.1| transcription-repair coupling factor [Lautropia mirabilis ATCC 51599]
 gi|319742868|gb|EFV95274.1| transcription-repair coupling factor [Lautropia mirabilis ATCC 51599]
          Length = 1264

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 145/479 (30%), Positives = 224/479 (46%), Gaps = 19/479 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +W    R+        A ++  L  R+  +       +  G           F 
Sbjct: 632  HTLGSGQWDKARRKAAEKARDTAVELLDLYARRAARPGHAFKFDPAG--YAAFAEGFGFE 689

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q++AI  ++QD+     M R++ GDVG GKT VAL A   A   G Q  ++ P  +
Sbjct: 690  ETPDQQAAIHAVVQDLIAPKPMDRLVCGDVGFGKTEVALRAAYVAASTGRQVAVLTPTTL 749

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QH++       +  + V  ++        R  LE I  G+  I+IGTH L    +++
Sbjct: 750  LAEQHFQTFNDRFSSFPLNVAELSRFGTAKSTRNTLEGIESGKIDIVIGTHKLLSKDVKF 809

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I   P
Sbjct: 810  RDLGLVIIDEEHRFGVRQKEALKNLRAEIDVLTLTATPIPRTLAMSLEGIRDFSVIATAP 869

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  I+T +        + E +   L  G + Y++  ++   +     +  +    L  
Sbjct: 870  QKRLAIRTFVRK-ETGGTIREAMLRELKRGGQVYFLHNEVGTIE-----NRRQMLAELVP 923

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I + HG+M + + E VM  F      +L+ TT+IE GIDV  A+ II+  A+ FG
Sbjct: 924  E--ARIEVAHGQMPERELERVMRDFHQQRFNVLLCTTIIETGIDVPTANTIIMHRADKFG 981

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL      ++K++  RL     ++    GF ++  DL+ 
Sbjct: 982  LAQLHQLRGRVGRSHHQAYAYLLIPDEEAITKDATKRLEAIQMMEELGAGFFLSMHDLEI 1041

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE+LG  QSG  +       L+  +L+ A +  K    ++PDL +       I L+
Sbjct: 1042 RGAGEVLGDNQSG--EMQEVGFSLYTDMLQQAVEALKS--GREPDLAATLAHVPEIKLH 1096


>gi|312876096|ref|ZP_07736084.1| DEAD/DEAH box helicase domain protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797082|gb|EFR13423.1| DEAD/DEAH box helicase domain protein [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 643

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 134/440 (30%), Positives = 229/440 (52%), Gaps = 18/440 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++     E++A  +  L  ++Q     G   + +    ++     P++ T+ Q 
Sbjct: 56  EWQKQKQKVRKSLEIVAKDLVELYAKRQL--HKGFKFSKDTLWQKEFEEKFPYTETEGQL 113

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I +DM  +  M RIL GDVG GKT VA+ A   AV    Q  ++ P  ILAQQHY
Sbjct: 114 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 173

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                  ++  + +E+++    +  ++K ++ +  G   I+IGTH L    +++  L L+
Sbjct: 174 MTFSARMKDFPVTIEVLSRLKNETQQKKIIKGLKEGTIDIVIGTHRLLSSDVKFKDLGLL 233

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+H+FGV+ + K+ +  T   VL +TATPIPRTL +  LG  D+S I + P  R P+
Sbjct: 234 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRYPV 293

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS- 517
           +T ++  N    + E +   +S G + +++  +I++ +        E    L      S 
Sbjct: 294 QTFVLEYNER-IIKEAILREISRGGQVFYLYNRIKDIQ--------EVAAKLQNLVGDSI 344

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A  HG+M + + E V+  F  G   +L+ TT+IE G+D+ + + +I+++++  GLAQL
Sbjct: 345 KVACAHGQMPEEELERVLLDFIEGRYDVLVCTTIIESGVDMPNVNTLIVKDSDRLGLAQL 404

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           +QLRGRVGR   ++     +     LS+ +  RL+ +K       GF IA  DL+ R  G
Sbjct: 405 YQLRGRVGRSNRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRGAG 464

Query: 632 EILGIKQSGMPKFLIAQPEL 651
            +LG  Q G    +     +
Sbjct: 465 SVLGKLQHGHINSVGYDMYI 484


>gi|125716894|ref|YP_001034027.1| transcription-repair coupling factor [Streptococcus sanguinis SK36]
 gi|125496811|gb|ABN43477.1| Transcription-repair coupling factor, putative [Streptococcus
           sanguinis SK36]
          Length = 1167

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 147/452 (32%), Positives = 239/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     + +A  +  L    +  +  G   + +    ++   + P+  
Sbjct: 559 KLNDGRFQKSKQKVQHQVQDIADDLIKLYA--ERSQLKGFAFSADDSNQEEFDNDFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I+++ +DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 617 TEDQLRSIQEVKKDMESSRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  + VE+++    +A +++ LE++  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHYTNFKERFNDFAVNVEVLSRFRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIIIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 797 NRYPVQTYVLESNPT-VIREAVLREIDRGGQVYYLYNKVDTIE--------QKVSELREL 847

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H G
Sbjct: 848 IPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGSMQSGFID--SVGFEMYSQLLEEA 997


>gi|152995735|ref|YP_001340570.1| transcription-repair coupling factor [Marinomonas sp. MWYL1]
 gi|150836659|gb|ABR70635.1| transcription-repair coupling factor [Marinomonas sp. MWYL1]
          Length = 1137

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 145/462 (31%), Positives = 237/462 (51%), Gaps = 17/462 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W++  ++        A ++  +  +++ +  +G          +      PF  T  Q+ 
Sbjct: 544 WSAAKQKAAEKARDTAAELLEIYAKREAR--VGHAFAKPDDQYELFSAGFPFEETPDQQM 601

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  ++ DMS K  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 602 AIDAVMADMSAKKPMDRLVCGDVGFGKTEVAMRAAFLAVQDGKQVAVLVPTTLLAQQHYE 661

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  +  + +E+++          +++R+  G+A I++GTH L Q  I++  L LVI
Sbjct: 662 NFCDRFADWPVEIELLSRFRSGKQSNTSIDRLESGKADIVVGTHKLIQSDIKFANLGLVI 721

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV+Q+ +         +L +TATPIPRTL ++  G  D+S I   PA R  +K
Sbjct: 722 IDEEHRFGVKQKEQFKALRAEVDILTLTATPIPRTLNMSLSGIRDLSIIATPPAKRLSVK 781

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +   +  E +   L  G + Y++  +++       +   E    L     + + 
Sbjct: 782 TFVKQKDD-HQTKEAILRELHRGGQVYYLHNEVQTI-----QKTAEELEELIPE--ARVI 833

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M + + E VM  F +    +L+ +T+IE GID+ +A+ IIIE A+ FGLAQLHQL
Sbjct: 834 VGHGQMRERELEQVMSDFYHKRANVLVCSTIIETGIDIPNANTIIIERADKFGLAQLHQL 893

Query: 580 RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL      ++ ++  RL  +        GF +A  DL+ R  GE+L
Sbjct: 894 RGRVGRSHHQAYAYLLTPNDRKVTGDAEKRLEAITLADTLGAGFTLATHDLEIRGTGELL 953

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           G  QSG  + +     +   +L+ A K  K+  + D D+TS 
Sbjct: 954 GDGQSGHIEHVGFSLFMD--MLDRAVKSLKNGESPDIDITSP 993


>gi|306992281|gb|ADN19257.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992291|gb|ADN19262.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 167/453 (36%), Positives = 267/453 (58%), Gaps = 8/453 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992305|gb|ADN19269.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992307|gb|ADN19270.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992315|gb|ADN19274.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992331|gb|ADN19282.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 167/453 (36%), Positives = 267/453 (58%), Gaps = 8/453 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|306992289|gb|ADN19261.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 167/454 (36%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAEM 449


>gi|16802260|ref|NP_463745.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e]
 gi|224503466|ref|ZP_03671773.1| transcription-repair coupling factor [Listeria monocytogenes FSL
            R2-561]
 gi|284803047|ref|YP_003414912.1| transcription-repair coupling factor [Listeria monocytogenes 08-5578]
 gi|284996188|ref|YP_003417956.1| transcription-repair coupling factor [Listeria monocytogenes 08-5923]
 gi|16409579|emb|CAD00741.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e]
 gi|284058609|gb|ADB69550.1| transcription-repair coupling factor [Listeria monocytogenes 08-5578]
 gi|284061655|gb|ADB72594.1| transcription-repair coupling factor [Listeria monocytogenes 08-5923]
          Length = 1179

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 142/452 (31%), Positives = 240/452 (53%), Gaps = 19/452 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T+ Q 
Sbjct: 573  EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631  RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691  ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751  IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T +   N +  V E ++  L+   + Y++  ++E        S+ ++ + +      + 
Sbjct: 811  QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVE--------SITQKADEISAMVPDAR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+
Sbjct: 862  VATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+    +Y     L + +  RLS +K       GF IA  DL  R  G 
Sbjct: 922  QLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ILG +Q G    +     L+  +L+ A +  K
Sbjct: 982  ILGAQQHGFIDSVGFD--LYSQMLKEAIEAKK 1011


>gi|306992313|gb|ADN19273.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 167/454 (36%), Positives = 267/454 (58%), Gaps = 8/454 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVENAEM 449


>gi|324991860|gb|EGC23783.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK405]
 gi|324996250|gb|EGC28160.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK678]
 gi|325698026|gb|EGD39907.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK160]
 gi|327458484|gb|EGF04834.1| transcription-repair coupling factor [Streptococcus sanguinis SK1]
 gi|327490344|gb|EGF22131.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK1058]
          Length = 1167

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 147/452 (32%), Positives = 238/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     + +A  +  L    +  +  G   + +    ++   + P+  
Sbjct: 559 KLNDGRFQKSKQKVQHQVQDIADDLIKLYA--ERSQLKGFAFSADDSNQEEFDNDFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I+++ +DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 617 TEDQLRSIQEVKKDMESSRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  + VE+++    +A +++ LE++  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHYTNFKERFNDFAVNVEVLSRFRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIIIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 797 NRYPVQTYVLESNPT-VIREAVLREIDRGGQVYYLYNKVDTIE--------QKVSELREL 847

Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H G
Sbjct: 848 IPEVSIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGSMQSGFID--SVGFEMYSQLLEEA 997


>gi|293366145|ref|ZP_06612832.1| transcription-repair coupling factor [Staphylococcus epidermidis
            M23864:W2(grey)]
 gi|291319739|gb|EFE60098.1| transcription-repair coupling factor [Staphylococcus epidermidis
            M23864:W2(grey)]
 gi|329737888|gb|EGG74116.1| transcription-repair coupling factor [Staphylococcus epidermidis
            VCU045]
          Length = 1166

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 156/477 (32%), Positives = 241/477 (50%), Gaps = 22/477 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +  +G     +         + P+  T  Q 
Sbjct: 565  EWKKTKAKVQQSVEDIADELIDLY--KEREMSVGYQYGQDTAEQSAFEHDFPYELTPDQS 622

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 623  KSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHY 682

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        R+  E +  G   I++GTH L    IQY  L L+
Sbjct: 683  ETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLL 742

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 743  IVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 802

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 803  QTYVLEQN-TNFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQRLMPD--ANI 854

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+Q
Sbjct: 855  AVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQ 914

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 915  LRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNL 974

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            LG +Q G    +     L+  +LE A  + + I  + PD        I + L+L  Y
Sbjct: 975  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGIKEESPD-----APDIEVELHLDAY 1024


>gi|33592030|ref|NP_879674.1| transcription-repair coupling factor [Bordetella pertussis Tohama I]
 gi|33571674|emb|CAE41167.1| transcription-repair coupling factor [Bordetella pertussis Tohama I]
 gi|332381446|gb|AEE66293.1| transcription-repair coupling factor [Bordetella pertussis CS]
          Length = 1143

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 145/473 (30%), Positives = 227/473 (47%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  ++  ++       +     +       F  T  Q 
Sbjct: 550  QWDKARRKAARQVRDTAAELLALYAQRAAREG--YAFKLPMSDYEAFAEGFGFEETPDQA 607

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH 
Sbjct: 608  AAIQAVIMDMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVANGKQVALLCPTTLLAEQHA 667

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + V  ++          A+E I  G+  I+IGTH +    +++ +L LV
Sbjct: 668  QTFSDRFADWPVRVVELSRFRSAKEVAAAVEGINDGRVDIVIGTHKILSKDVRFKRLGLV 727

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I   P  R  I
Sbjct: 728  IIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAI 787

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +   +    + E L   L  G + Y++  ++E        +   R   L     + I
Sbjct: 788  KTFVRREDG-STIREALLRELKRGGQVYFLHNEVETIH-----NRRARLEELVPE--ARI 839

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F      +L+ TT+IE GID+  A+ I+I  A+ FGLAQLHQ
Sbjct: 840  AVAHGQMPERELEQVMKGFYQQRHNVLLCTTIIETGIDIPTANTIVIHRADRFGLAQLHQ 899

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTR---LSVLKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL      ++ N+  R   +  ++    GF +A  DL+ R  GEI
Sbjct: 900  LRGRVGRSHHQAYAYLLTPGEDAITNNAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEI 959

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG  QSG          +++ +L  A +  K    ++PDL +    +  + L+
Sbjct: 960  LGDSQSG--NIQEVGFSMYNEMLNEAVRALKA--GEEPDLDAPFNLACEVNLH 1008


>gi|139472894|ref|YP_001127609.1| transcription-repair coupling factor [Streptococcus pyogenes str.
           Manfredo]
 gi|134271140|emb|CAM29350.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes str. Manfredo]
          Length = 1167

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 151/452 (33%), Positives = 235/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  ++ G   + +  + +    +  F  
Sbjct: 555 KLNDGRFQKTKQKVARQVEDIADDLLKLYA--ERSQQKGFSFSPDDDLQRAFDDDFAFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  K   +N  + V++++    +  + + LE +  GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYENFKARFENYLVEVDVLSRFRSKKEQAETLEHVQKGQIDIIIGTHRLLSKDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++  +        ++   L E 
Sbjct: 793 NRYPVQTYVLE-NNPGLVREAIIREMDRGGQIFYVYNKVDTIE--------KKVAELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 993


>gi|283138935|gb|ADB12538.1| transcription-repair coupling factor [uncultured bacterium 9F08]
          Length = 1155

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 150/478 (31%), Positives = 242/478 (50%), Gaps = 19/478 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K    +W    R+       +A ++  +  R++ ++    P  V+           PF 
Sbjct: 553  HKLGSGQWEKAKRKAGEKIRDVAAELLEIYARREARQGHRYP--VDEAQYGAFAAAFPFE 610

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q+ AI  +L DM  +  M R++ GDVG GKT VA+ A   AV  G Q  ++ P  +
Sbjct: 611  ETPDQQDAIDAVLADMRAEQPMDRLICGDVGFGKTEVAMRAAFVAVMGGRQVAVLVPTTL 670

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QH + ++    +  + +E ++       +++ L+ +  G   I+IGTH L Q+ I+Y
Sbjct: 671  LAEQHTQNLRDRFADWPVRIESLSRFRSSKEQQQVLKGLEEGSVDIVIGTHKLLQEGIRY 730

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +L +VI+DE+HRFGV+Q+ +         VL +TATPIPRTL +   G  ++S I   P
Sbjct: 731  KRLGMVIIDEEHRFGVRQKERFKALRAEVDVLTLTATPIPRTLNMAMGGIRELSIIASPP 790

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  +KT +   N  + V E     +  G + Y++  +++  ++ +          L  
Sbjct: 791  ARRLAVKTFVHEWN-PELVKEACLREVRRGGQVYFLHNEVDTIEKISRD-----LEELLP 844

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               +SI + HG+M + + E VM  F +    LL+ TT+IE GID+  A+ III  A+  G
Sbjct: 845  E--ASIGVAHGQMPERELERVMSDFYHQRFNLLVCTTIIETGIDIPSANTIIINRADRLG 902

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQL+QLRGRVGR    +   LL      ++K++  RL  +++ E+   GF +A  DL+ 
Sbjct: 903  LAQLYQLRGRVGRSHHRAYAYLLIPSKRSMTKDAGKRLEAIESIEELGTGFTLATHDLEI 962

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            R  GE+LG +QSG    +     L+  LLE A K  +    Q+P+L         + L
Sbjct: 963  RGAGELLGEEQSGQMHEIGFS--LYTELLERAVKSLRE--GQEPELERPLLHGTEVDL 1016


>gi|242241588|ref|ZP_04796033.1| transcription-repair coupling factor [Staphylococcus epidermidis
            W23144]
 gi|242234969|gb|EES37280.1| transcription-repair coupling factor [Staphylococcus epidermidis
            W23144]
          Length = 1166

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 156/477 (32%), Positives = 241/477 (50%), Gaps = 22/477 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +  +G     +         + P+  T  Q 
Sbjct: 565  EWKKTKAKVQQSVEDIADELIDLY--KEREMSVGYQYGQDTAEQSAFEHDFPYELTPDQS 622

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 623  KSIDEIKGDMEKARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHY 682

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        R+  E +  G   I++GTH L    IQY  L L+
Sbjct: 683  ETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLL 742

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 743  IVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 802

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 803  QTYVLEQN-TNFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 854

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+Q
Sbjct: 855  AVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQ 914

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 915  LRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNL 974

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            LG +Q G    +     L+  +LE A  + + I  + PD        I + L+L  Y
Sbjct: 975  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGIKEESPD-----APDIEVELHLDAY 1024


>gi|57866056|ref|YP_187737.1| transcription-repair coupling factor [Staphylococcus epidermidis
            RP62A]
 gi|81819455|sp|Q5HRQ2|MFD_STAEQ RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|57636714|gb|AAW53502.1| transcription-repair coupling factor [Staphylococcus epidermidis
            RP62A]
          Length = 1169

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 156/477 (32%), Positives = 241/477 (50%), Gaps = 22/477 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +  +G     +         + P+  T  Q 
Sbjct: 568  EWKKTKAKVQQSVEDIADELIDLY--KEREMSVGYQYGQDTAEQSAFEHDFPYELTPDQS 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 626  KSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        R+  E +  G   I++GTH L    IQY  L L+
Sbjct: 686  ETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 746  IVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 806  QTYVLEQN-TNFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQRLMPD--ANI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+Q
Sbjct: 858  AVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            LG +Q G    +     L+  +LE A  + + I  + PD        I + L+L  Y
Sbjct: 978  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGIKEESPD-----APDIEVELHLDAY 1027


>gi|332359490|gb|EGJ37309.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK1056]
          Length = 1167

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 146/452 (32%), Positives = 238/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     + +A  +  L    +  +  G   + +    ++   + P+  
Sbjct: 559 KLNDGRFQKSKQKVQHQVQDIADDLIKLYA--ERSQLKGFAFSADDSNQEEFDNDFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I+++ +DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 617 TEDQLRSIQEVKKDMESSRPMDRLLVGDVGFGKTEVAMRAAFKAVNNHKQVAVLVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  + VE+++    +A +++ L+++  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHYTNFKERFNDFAVNVEVLSRFRSKAEQKQTLDKLQKGQVDIIIGTHRLLSKDVEFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIIIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 797 NRYPVQTYVLESNPT-VIREAVLREIDRGGQVYYLYNKVDTIE--------QKVSELREL 847

Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H G
Sbjct: 848 IPEVSIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGSMQSGFID--SVGFEMYSQLLEEA 997


>gi|255520464|ref|ZP_05387701.1| transcription-repair coupling factor [Listeria monocytogenes FSL
            J1-175]
          Length = 1179

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 141/449 (31%), Positives = 239/449 (53%), Gaps = 19/449 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T+ Q 
Sbjct: 573  EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSADDEMQREFEEAFPYQETEDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 631  RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691  ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751  IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T +   N +  V E ++  L+   + Y++  ++E        S+ ++ + +      + 
Sbjct: 811  QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVE--------SITQKADEISAMVPDAR 861

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+
Sbjct: 862  VATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLY 921

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+    +Y     L + +  RLS +K       GF IA  DL  R  G 
Sbjct: 922  QLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGN 981

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            ILG +Q G    +     L+  +L+ A +
Sbjct: 982  ILGAQQHGFIDSVGFD--LYSQMLKEAIE 1008


>gi|169335546|ref|ZP_02862739.1| hypothetical protein ANASTE_01961 [Anaerofustis stercorihominis DSM
            17244]
 gi|169258284|gb|EDS72250.1| hypothetical protein ANASTE_01961 [Anaerofustis stercorihominis DSM
            17244]
          Length = 1150

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 135/485 (27%), Positives = 247/485 (50%), Gaps = 24/485 (4%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
             +  + R A  EL    I L   R++ K       + +    ++   N  +  T+ QE  
Sbjct: 559  NTKNKTRKAVKELAKEYITLYAKRREIKG---FAFSADTPWQKEFEDNFGYELTEDQERC 615

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            ++++ +DM +   M R++ GDVG GKT VA  A+  AV  G Q  ++ P  ILA QHY  
Sbjct: 616  VREVKEDMEKPYPMDRLICGDVGFGKTEVAARAIFKAVMDGKQCAVLVPTTILAMQHYNT 675

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
              +  ++  + +E+++    +    + ++++  G+  I+IGTH L  D++ +  L L++V
Sbjct: 676  FVERFKDFPVKIEMLSRFKTKKEENRIIDKLERGKVDIVIGTHKLLSDNVNFKDLGLLVV 735

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+ RFGV  + KL         L ++ATPIPRTL ++ +G  D+S I + P  R+  +T
Sbjct: 736  DEEQRFGVAHKDKLKLLKENVDTLTLSATPIPRTLNMSLIGIRDLSTIEKPPKEREETET 795

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             +I  +    + + +   LS G + +++   ++  +++  +        L       +  
Sbjct: 796  YVIEYDDY-IIKDAINRELSRGGQVFFVYNSVKNAEKTCLK-----LRKLIPGL--KVEF 847

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             +G+M + + E  M  F N    +L+ T ++E G+++++A+ +II+   + GL+QL+QLR
Sbjct: 848  ANGQMPERELEKTMFRFLNKEFDVLVCTAIVENGLNILNANTMIIKEGNNLGLSQLYQLR 907

Query: 581  GRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
            GRVGR  + + C + Y     L++ +  RL  +        GF IA  DL+ R  G +LG
Sbjct: 908  GRVGRSNKNAYCYVTYEKDKALNEVAMKRLKAINEFTKFGSGFQIAIRDLQIRGSGNLLG 967

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ---YNE 692
              QSG   F     EL+  +L+ A K++K    ++P  T++   +I+I  Y+ +    +E
Sbjct: 968  ANQSGH--FTNVGYELYTKMLQEALKESKGEAQKEPVETTI---NIKINAYIDKKYIEDE 1022

Query: 693  AFQFI 697
              + I
Sbjct: 1023 KQRII 1027


>gi|282875433|ref|ZP_06284305.1| transcription-repair coupling factor [Staphylococcus epidermidis
            SK135]
 gi|281295790|gb|EFA88312.1| transcription-repair coupling factor [Staphylococcus epidermidis
            SK135]
          Length = 1169

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 156/477 (32%), Positives = 241/477 (50%), Gaps = 22/477 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +  +G     +         + P+  T  Q 
Sbjct: 568  EWKKTKAKVQQSVEDIADELIDLY--KEREMSVGYQYGQDTAEQSAFEHDFPYELTPDQS 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 626  KSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        R+  E +  G   I++GTH L    IQY  L L+
Sbjct: 686  ETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 746  IVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 806  QTYVLEQN-TNFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+Q
Sbjct: 858  AVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            LG +Q G    +     L+  +LE A  + + I  + PD        I + L+L  Y
Sbjct: 978  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGIKEESPD-----APDIEVELHLDAY 1027


>gi|227487825|ref|ZP_03918141.1| transcription-repair coupling factor [Corynebacterium
            glucuronolyticum ATCC 51867]
 gi|227092152|gb|EEI27464.1| transcription-repair coupling factor [Corynebacterium
            glucuronolyticum ATCC 51867]
          Length = 1218

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 144/474 (30%), Positives = 239/474 (50%), Gaps = 20/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++  +  + +A ++  L  +++     G     +     ++  N P+  T+ Q 
Sbjct: 582  DWKKTKKKARSAVKEIAAELVDLYAKRRAA--PGHAFAPDSPWQAEMEDNFPYVETEDQM 639

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  +  DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 640  LAIDAVKHDMEQPVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHE 699

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++      I +  ++   P    R+ ++ +  G   I+IGTH L Q  +Q+  L LV
Sbjct: 700  ATFRERMDGFGITIRQLSRFTPDKQAREIIKGLVDGSVDIVIGTHRLLQTGVQWKDLGLV 759

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +        VL M+ATPIPRTL ++  G  +++ I   P  R+P+
Sbjct: 760  IVDEEQRFGVEHKEHIKALRAHVDVLTMSATPIPRTLEMSMSGIREMTTILTPPQDRRPV 819

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T +       +V   ++  L    + +++  ++        +S+ ER   L E    + 
Sbjct: 820  LTYVGAQED-KQVAAAIRRELLRDGQVFYVHNRV--------KSIEERARQLRELVPEAR 870

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLH
Sbjct: 871  IVVAHGQMSEEQLEKTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLH 930

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR  E +    LY     L++ SY RL+ +    D   G  +A +DL+ R  G 
Sbjct: 931  QLRGRVGRSRERAYAYFLYPKGQVLTETSYERLTTIAQNNDMGAGMAVAMKDLEMRGAGN 990

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP-DLTSVRGQSIRILL 685
            +LG +QSG         +L+  L+E A +  + +    P D T  +   IR+ L
Sbjct: 991  VLGAEQSGHI--AGVGFDLYVRLVEEAVEAFRALADGKPLDATDQQSAEIRVDL 1042


>gi|254491679|ref|ZP_05104858.1| transcription-repair coupling factor [Methylophaga thiooxidans
           DMS010]
 gi|224463157|gb|EEF79427.1| transcription-repair coupling factor [Methylophaga thiooxydans
           DMS010]
          Length = 1101

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 156/476 (32%), Positives = 251/476 (52%), Gaps = 23/476 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    +        +A ++  +  R+        P+   G+         PF PT  Q+
Sbjct: 505 QWDKARKRAAEKARDVAAELLDIYARRAA--NKKTPMATPGEDYAAFAAAFPFEPTPDQQ 562

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI  + +DM  ++ M R++ GDVG GKT VA+ A   AV +G Q +++ P  +LAQQHY
Sbjct: 563 DAIDAVTKDMLSEHPMDRLVCGDVGFGKTEVAMRAAFLAVHSGKQVLVLVPTTLLAQQHY 622

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E  K    +  + VE+++    +    +    I+ GQA IIIGTH L Q  I+  +L L 
Sbjct: 623 ENFKDRFADWPVRVEVLSRFRSKKELDRVKSGISEGQADIIIGTHKLLQQDIEPKRLGLF 682

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+HRFGV Q+ ++ +  +   VL +TATPIPRTL ++  G  D+S I   PA R  I
Sbjct: 683 VLDEEHRFGVTQKEQIKKYRSQIDVLTLTATPIPRTLNMSISGIRDLSIIATAPARRLAI 742

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--S 516
           KT ++     +++ E +   +  G + Y++  ++E+          ER     E     +
Sbjct: 743 KTFVMQW-EAEKIREGMLREIKRGGQVYFLHNKVEDI---------ERVAREIEAIMPEA 792

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A+ HG+M + + E VM  F +    +L+ TT+IE GIDV  A+ I I+ A+  GLAQL
Sbjct: 793 KVAVAHGQMRERELEQVMLDFYHQRFNVLVCTTIIETGIDVPSANTIFIDRADKLGLAQL 852

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +Q+RGRVGR    +   L+  P   ++K++  RL  +++ ED   GF +A  D++ R  G
Sbjct: 853 YQIRGRVGRSHHRAYAYLITPPQKVMTKDAVKRLEAIESIEDLGAGFTLATHDMEIRGAG 912

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           E+LG +QSG    +     L++ LLE A K  K    ++P LT+     + I L++
Sbjct: 913 ELLGDEQSGQMHEIGFN--LYNELLERAVKAMKS--GKEPSLTNQDRHFVEIDLHV 964


>gi|251809809|ref|ZP_04824282.1| transcription-repair coupling factor [Staphylococcus epidermidis
            BCM-HMP0060]
 gi|251806677|gb|EES59334.1| transcription-repair coupling factor [Staphylococcus epidermidis
            BCM-HMP0060]
          Length = 1166

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 156/477 (32%), Positives = 241/477 (50%), Gaps = 22/477 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +  +G     +         + P+  T  Q 
Sbjct: 565  EWKKTKAKVQQSVEDIADELIDLY--KEREMSVGYQYGQDTAEQSAFEHDFPYELTPDQS 622

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 623  KSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHY 682

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        R+  E +  G   I++GTH L    IQY  L L+
Sbjct: 683  ETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLL 742

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 743  IVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 802

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 803  QTYVLEQN-TNFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 854

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+Q
Sbjct: 855  AVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQ 914

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 915  LRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNL 974

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            LG +Q G    +     L+  +LE A  + + I  + PD        I + L+L  Y
Sbjct: 975  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGIKEESPD-----APDIEVELHLDAY 1024


>gi|329723937|gb|EGG60462.1| transcription-repair coupling factor [Staphylococcus epidermidis
            VCU144]
          Length = 1166

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 156/477 (32%), Positives = 241/477 (50%), Gaps = 22/477 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +  +G     +         + P+  T  Q 
Sbjct: 565  EWKKTKAKVQQSVEDIADELIDLY--KEREMSVGYQYGQDTAEQSAFEHDFPYELTPDQS 622

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 623  KSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHY 682

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        R+  E +  G   I++GTH L    IQY  L L+
Sbjct: 683  ETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLL 742

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 743  IVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 802

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 803  QTYVLEQN-TNFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 854

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+Q
Sbjct: 855  AVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQ 914

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 915  LRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNL 974

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            LG +Q G    +     L+  +LE A  + + I  + PD        I + L+L  Y
Sbjct: 975  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGIKEESPD-----APDIEVELHLDAY 1024


>gi|306992483|gb|ADN19358.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 165/452 (36%), Positives = 265/452 (58%), Gaps = 8/452 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            F NG   +L++TTVIEVG++V +A+++I+EN
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVEN 447


>gi|145630886|ref|ZP_01786663.1| transcription-repair coupling factor [Haemophilus influenzae R3021]
 gi|144983546|gb|EDJ91014.1| transcription-repair coupling factor [Haemophilus influenzae R3021]
          Length = 427

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 155/430 (36%), Positives = 235/430 (54%), Gaps = 15/430 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  Q + + G     + +  Q+      F  T  QE AI  ++ DM Q   M R++ G
Sbjct: 6   LDVYAQREAKKGFAFKYDREEFQQFAATFSFEETYDQEMAINAVISDMCQPKAMDRLVCG 65

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VA+ A   AV    Q  ++ P  +LAQQHYE  K    N  + VE+++    
Sbjct: 66  DVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFKT 125

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++ LE +A G+  I+IGTH L Q  +++  L L+I+DE+HRFGV Q+ K+ Q    
Sbjct: 126 AKEQKQILENLAEGKVDILIGTHKLIQSDVKFSDLGLLIIDEEHRFGVGQKEKIKQLRAN 185

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L +TATPIPRTL +   G  D+S I+  PA R  IKT +   + +  V E +   + 
Sbjct: 186 IDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTFVRQNDDL-VVREAILREIL 244

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + Y++   +   +     +  E+  +L     + + + HG+M + + E VM  F + 
Sbjct: 245 RGGQVYYLHNDVASIE-----NTAEKLTALVPE--ARVIVGHGQMRERELERVMSDFYHQ 297

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
              +L+ +T+IE GIDV  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  PP 
Sbjct: 298 RYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPK 357

Query: 600 -LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
            ++K++  RL  L+N ++   GF++A  DL+ R  GE+LG +QSG  + +     L+  L
Sbjct: 358 MMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSGQIESIGFS--LYMEL 415

Query: 656 LEIARKDAKH 665
           L+ A K  K 
Sbjct: 416 LDAAVKALKR 425


>gi|311070702|ref|YP_003975625.1| transcription-repair coupling factor [Bacillus atrophaeus 1942]
 gi|310871219|gb|ADP34694.1| transcription-repair coupling factor [Bacillus atrophaeus 1942]
          Length = 1177

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 236/449 (52%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++     + +A  +  L   ++     G   + + ++ ++     P+  T+ Q 
Sbjct: 572  EWKRVKKKVETSVQDIADDLIKLYAEREA--SKGYAFSPDHEMQREFESAFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  ILAQQHY
Sbjct: 630  RSINEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I +  Q+  + V +++    +    + ++ + +G   ++IGTH L    + Y  L L+
Sbjct: 690  ETIMERFQDYPLTVGLLSRFRTRKEANETIKGLKNGTVDMVIGTHRLLSKDVVYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  L+ G + Y++  ++++ +        +  + L     + +
Sbjct: 810  QTYVVEYNG-ALVREAIERELARGGQVYFLYNRVDDIE-----RKADEISMLVPD--AKV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++ + ESVM +F  G   +L++TT+IE G+D+ + + +I+ + +  GL+QL+Q
Sbjct: 862  AYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDKMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +Q G    +     L+  +L+ A ++
Sbjct: 982  LGAQQHGFIDSVGFD--LYSQMLKEAIEE 1008


>gi|306992481|gb|ADN19357.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 165/451 (36%), Positives = 265/451 (58%), Gaps = 8/451 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           F NG   +L++TTVIEVG++V +A+++I+EN
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVEN 446


>gi|253996787|ref|YP_003048851.1| transcription-repair coupling factor [Methylotenera mobilis JLW8]
 gi|253983466|gb|ACT48324.1| transcription-repair coupling factor [Methylotenera mobilis JLW8]
          Length = 1145

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 150/472 (31%), Positives = 233/472 (49%), Gaps = 19/472 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++ L      A ++  L  ++  ++       +  +  +      PF  T  Q  
Sbjct: 553  WEKAKKKALKQIRDTAAELLNLYAQRAARRG--HAFTLSLQDYEAFCEGFPFEETADQLE 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+++++DM     M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH+ 
Sbjct: 611  AIENVIKDMQSGRPMDRLVCGDVGFGKTEVALRAAFVAVMGGRQVAVLVPTTLLAEQHFN 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                      I +  I+       + +AL  +  G+  IIIGTH L Q  +++  L LVI
Sbjct: 671  NFSDRFAEWPIKIAEISRFRTAKEQAEALRGLEAGEIDIIIGTHRLIQKDVRFKNLGLVI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ +L        VL +TATPIPRTL +   G  + S I   P  R  IK
Sbjct: 731  LDEEHRFGVRQKEQLKALRAEVDVLTLTATPIPRTLSMAMEGLREFSVIATPPQKRLSIK 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T     +    + E +      G + Y++  +++        S+ E+   +     + IA
Sbjct: 791  TFHTEYSE-GIIREAVTREFKRGGQVYFLHNEVDTIH-----SMREKLERILPD--ARIA 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG++ + + E VM  F +    LL+ TT+IE GIDV  A+ II+  A+ FGLAQ+HQL
Sbjct: 843  VAHGQLRERELEHVMRDFYHQRYNLLLCTTIIETGIDVPTANTIIMNKADMFGLAQMHQL 902

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      ++  +  RL  ++  ED   GF +A  DL+ R  GE+L
Sbjct: 903  RGRVGRSHHQAYAYLLTEAGRKITVQAQKRLDAIQLMEDLGAGFHLAMHDLEIRGAGELL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            G  QSG  + +     L+  +L  A K  K    ++PDL +  G +  I L+
Sbjct: 963  GDSQSGEMQEIGFN--LYADMLNHAVKQLKA--GKEPDLNAPLGVTTEINLH 1010


>gi|154684574|ref|YP_001419735.1| hypothetical protein RBAM_000640 [Bacillus amyloliquefaciens FZB42]
 gi|154350425|gb|ABS72504.1| Mfd [Bacillus amyloliquefaciens FZB42]
          Length = 1177

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 136/449 (30%), Positives = 237/449 (52%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++     + +A  +  L   ++     G   + + ++ ++     P+  T+ Q 
Sbjct: 572  EWKRVKKKVENSVQDIADDLIKLYAEREA--SKGYAFSPDHEMQRQFESAFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  ILAQQHY
Sbjct: 630  RSIQEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I +  Q+  I + +++    +    + ++ + +G   I+IGTH L    + Y  L L+
Sbjct: 690  ETIMERFQDYPINIGLLSRFRTRKESNETIKGLKNGTVDIVIGTHRLLSKDVVYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  L+ G + Y++  ++++ +        +  + L     + +
Sbjct: 810  QTYVVEYNG-ALVREAIERELARGGQVYFLYNRVDDIE-----RKADEISMLVPD--AKV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++ + ESVM +F  G   +L++TT+IE G+D+ + + +I+ + +  GL+QL+Q
Sbjct: 862  AYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDKMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +Q G    +     L+  +L+ A ++
Sbjct: 982  LGAQQHGFIDSVGFD--LYSQMLKEAIEE 1008


>gi|306992453|gb|ADN19343.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 167/453 (36%), Positives = 266/453 (58%), Gaps = 8/453 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           F NG   +L++TTVI VG++V +A+++I+ENAE
Sbjct: 416 FVNGKIDILVSTTVIGVGVNVPNATVMIVENAE 448


>gi|242371667|ref|ZP_04817241.1| transcription-repair coupling factor [Staphylococcus epidermidis
            M23864:W1]
 gi|242350616|gb|EES42217.1| transcription-repair coupling factor [Staphylococcus epidermidis
            M23864:W1]
          Length = 1169

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 156/482 (32%), Positives = 245/482 (50%), Gaps = 20/482 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +  +G     +         + P+  T  Q+
Sbjct: 568  EWKKTKAKVQQSVEDIADELIDLY--KEREMSVGYKYGEDTAEQSAFEHDFPYELTPDQD 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I  DM ++  M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 626  KSIEEIKSDMERERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 686  ETLIERMQDFPVEIQLVSRFRTTKEIKETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 746  IVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 806  QTYVLEQN-TNFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+Q
Sbjct: 858  AVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +Q G    +     L+  +LE A  + + I  + PD   V    + + L  Y   E 
Sbjct: 978  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGIKEETPDAPEVE---VELNLDAYLPAEY 1032

Query: 694  FQ 695
             Q
Sbjct: 1033 IQ 1034


>gi|329733010|gb|EGG69349.1| transcription-repair coupling factor [Staphylococcus epidermidis
            VCU028]
          Length = 1166

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 156/477 (32%), Positives = 241/477 (50%), Gaps = 22/477 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +  +G     +         + P+  T  Q 
Sbjct: 565  EWKKTKAKVQQSVEDIADELIDLY--KEREMSVGYQYGQDTAEQSAFEHDFPYELTPDQS 622

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 623  KSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHY 682

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        R+  E +  G   I++GTH L    IQY  L L+
Sbjct: 683  ETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLL 742

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 743  IVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 802

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 803  QTYVLEQN-TNFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 854

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+Q
Sbjct: 855  AVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQ 914

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 915  LRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNL 974

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            LG +Q G    +     L+  +LE A  + + I  + PD        I + L+L  Y
Sbjct: 975  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGIKEESPD-----APDIEVELHLDAY 1024


>gi|306992209|gb|ADN19221.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992261|gb|ADN19247.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992267|gb|ADN19250.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 166/451 (36%), Positives = 265/451 (58%), Gaps = 8/451 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           F NG   +L++TTVIEVG++V +A+++I+EN
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVEN 446


>gi|306992249|gb|ADN19241.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 169/454 (37%), Positives = 266/454 (58%), Gaps = 8/454 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLMKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VHGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LTQK
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306826404|ref|ZP_07459718.1| transcription-repair coupling factor [Streptococcus pyogenes ATCC
           10782]
 gi|304431399|gb|EFM34394.1| transcription-repair coupling factor [Streptococcus pyogenes ATCC
           10782]
          Length = 1167

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 151/452 (33%), Positives = 235/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  ++ G   + +  + +    +  F  
Sbjct: 555 KLNDGRFQKTKQKVARQVEDIADDLLKLYA--ERSQQKGFSFSPDDDLQRAFDDDFAFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  K   +N  + V++++    +  + + LER+  GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYENFKARFENYPVEVDVLSRFRSKKEQAETLERVQKGQIDIIIGTHRLLSKDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++  +        ++   L E 
Sbjct: 793 NRYPVQTYVLE-NNPGLVREAIIREMDRGGQIFYVYNKVDTIE--------KKVAELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLETIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE  
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEQV 993


>gi|306992257|gb|ADN19245.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 446

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 166/451 (36%), Positives = 265/451 (58%), Gaps = 8/451 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           F NG   +L++TTVIEVG++V +A+++I+EN
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVEN 446


>gi|319399660|gb|EFV87914.1| transcription-repair coupling factor [Staphylococcus epidermidis
            FRI909]
          Length = 1166

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 156/477 (32%), Positives = 241/477 (50%), Gaps = 22/477 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +  +G     +         + P+  T  Q 
Sbjct: 565  EWKKTKAKVQQSVEDIADELIDLY--KEREMSVGYQYGQDTAEQSAFEHDFPYELTPDQS 622

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 623  KSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHY 682

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        R+  E +  G   I++GTH L    IQY  L L+
Sbjct: 683  ETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLL 742

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 743  IVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 802

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 803  QTYVLEQN-TNFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 854

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+Q
Sbjct: 855  AVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQ 914

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 915  LRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNL 974

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            LG +Q G    +     L+  +LE A  + + I  + PD        I + L+L  Y
Sbjct: 975  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGIKEESPD-----APDIEVELHLDAY 1024


>gi|56479184|ref|YP_160773.1| transcription-repair coupling protein Mfd [Aromatoleum aromaticum
            EbN1]
 gi|56315227|emb|CAI09872.1| Transcription-repair coupling protein Mfd [Aromatoleum aromaticum
            EbN1]
          Length = 1157

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 150/473 (31%), Positives = 235/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++        A ++  L  ++  +   G   + +            F  T  Q+
Sbjct: 563  QWEKAKKKAALQVRDTAAELLALYAQRAAR--PGHRFDFKQHDLDAFAEGFGFETTPDQQ 620

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM     M R++ GDVG GKT VAL A   AV  G Q V++ P  +LA+QHY
Sbjct: 621  AAIDAVVTDMKSGQPMDRLVCGDVGFGKTEVALRAAFVAVADGKQVVVLTPTTLLAEQHY 680

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  I +  ++       +  +L+++A G+  IIIGTH L Q  +++ +L LV
Sbjct: 681  QTFSDRFADFAIRIAELSRFKSAKEQTDSLKQLAEGKVDIIIGTHRLLQKDVKFKRLGLV 740

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L    +   +L +TATPIPRTL L   G  + S I   P+ R  I
Sbjct: 741  IIDEEHRFGVRQKEMLKTLRSEIDILTLTATPIPRTLGLALEGLREFSVIATAPSRRLAI 800

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +   ++   + E +      G + Y++  +++        +V +    L     + I
Sbjct: 801  KTFVHRHSK-GIIREAVLREFKRGGQVYFLHNEVDTID-----NVRDELAELLPE--ARI 852

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG++ + + E VM +F      LL+ TT+IE GID+  A+ III  A+ FGLAQLHQ
Sbjct: 853  VIGHGQLPERELERVMRTFTQQRANLLLCTTIIETGIDIPTANTIIINRADRFGLAQLHQ 912

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL   H   S  +  RL     +++   GF +A  DL+ R  GE+
Sbjct: 913  LRGRVGRSHHQAYAYLLTDAHAKPSALAQKRLEAITMMEDLGSGFYLAMHDLEIRGAGEV 972

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG  QSG  +       L+  +L+ A +D +    ++PDLT        I L+
Sbjct: 973  LGENQSG--EIQQVGFSLYTEMLKRAVRDLQA--GKEPDLTQPLDVVSEINLH 1021


>gi|306992473|gb|ADN19353.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 168/454 (37%), Positives = 266/454 (58%), Gaps = 8/454 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    + I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQEIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            F NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|302876604|ref|YP_003845237.1| transcription-repair coupling factor [Clostridium cellulovorans 743B]
 gi|307687278|ref|ZP_07629724.1| transcription-repair coupling factor [Clostridium cellulovorans 743B]
 gi|302579461|gb|ADL53473.1| transcription-repair coupling factor [Clostridium cellulovorans 743B]
          Length = 1173

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 141/458 (30%), Positives = 234/458 (51%), Gaps = 17/458 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +       +A  +  L   ++     G   + +    Q+     P+  T  Q 
Sbjct: 577  EWQKAKTKARNSINEIAQDLVKLYATREA--VKGYSFSKDTTWQQQFEAEFPYEETPDQI 634

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI++I  DM +   M R+L GDVG GKT VA+ A   AV  G QA  + P  ILA+QHY
Sbjct: 635  SAIEEIKVDMEKNKPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQAAFLVPTTILAEQHY 694

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +KK      + +++I+       +++ L+ +  G   IIIGTH +   ++Q+  L L+
Sbjct: 695  KTLKKRFTGFPVNIDMISRFRSATQQKETLKSLKEGNVDIIIGTHKILGKTVQFKDLGLL 754

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+        VL ++ATPIPRTL ++  G   IS I   P  R P+
Sbjct: 755  IVDEEQRFGVSHKEKIKNAKKNIDVLTLSATPIPRTLNMSLTGVRSISVIETPPEERYPV 814

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + + +   ++   + +++  ++E     N R + +    L     + I
Sbjct: 815  QTYVVEYND-QLIRDAVLREINRKGQVFFVFNRVE-----NIREIADSLAHLIPE--ARI 866

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++ + E VM +F N    +L++TT+IE GID+ +A+ +II +A+  GL+QL+Q
Sbjct: 867  IVAHGQMAEKELEEVMRAFMNQEYDILVSTTIIETGIDIQNANTMIIYDADKMGLSQLYQ 926

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+   L Y     +++ +  RL  +K+      GF +A  DL+ R  G +
Sbjct: 927  LRGRVGRTNRIAYAYLTYRKDKIITEVAKKRLKAIKDFTELGSGFKVALRDLEIRGAGNV 986

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            +G  Q G    +     L+  +LE   K  K  + ++P
Sbjct: 987  MGSAQHGQMAAIGYD--LYCKMLEDTIKVIKGEIDKEP 1022


>gi|52078550|ref|YP_077341.1| transcription-repair coupling factor [Bacillus licheniformis ATCC
            14580]
 gi|52783912|ref|YP_089741.1| hypothetical protein BLi00068 [Bacillus licheniformis ATCC 14580]
 gi|52001761|gb|AAU21703.1| transcription-repair coupling factor [Bacillus licheniformis ATCC
            14580]
 gi|52346414|gb|AAU39048.1| Mfd [Bacillus licheniformis ATCC 14580]
          Length = 1177

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 141/465 (30%), Positives = 242/465 (52%), Gaps = 21/465 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  +  + +A  +  L   ++     G   + + ++ ++     P+  T+ Q 
Sbjct: 572  EWKRVKKKVESSVQDIADDLIKLYAEREA--SKGYAFSPDHEMQREFEAAFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  I+ P  ILAQQHY
Sbjct: 630  RSIHEIKRDMEKERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I +  Q+  I + +++    +    + ++ + +G   I+IGTH L    + Y  L L+
Sbjct: 690  ETILERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKDVVYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKRIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  L+ G + Y++  ++E+ +        E  + L     + +
Sbjct: 810  QTYVVEYNG-ALVREAIERELARGGQVYFLYNRVEDIE-----RKAEEISMLVPD--AKV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM +F  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK----DAKHILTQDPDLT 674
            LG +Q G    +     L+  +L+ A +    DA      +P++ 
Sbjct: 982  LGAQQHGFIDSVGFD--LYSQMLKEAIEARKGDAPQAEKFEPEID 1024


>gi|319648579|ref|ZP_08002793.1| mfd protein [Bacillus sp. BT1B_CT2]
 gi|317389346|gb|EFV70159.1| mfd protein [Bacillus sp. BT1B_CT2]
          Length = 1177

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 141/465 (30%), Positives = 242/465 (52%), Gaps = 21/465 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  +  + +A  +  L   ++     G   + + ++ ++     P+  T+ Q 
Sbjct: 572  EWKRVKKKVESSVQDIADDLIKLYAEREA--SKGYAFSPDHEMQREFEAAFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM ++  M R+L GDVG GKT VA+ A   A+  G Q  I+ P  ILAQQHY
Sbjct: 630  RSIHEIKRDMEKERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I +  Q+  I + +++    +    + ++ + +G   I+IGTH L    + Y  L L+
Sbjct: 690  ETILERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKDVVYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKRIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  L+ G + Y++  ++E+ +        E  + L     + +
Sbjct: 810  QTYVVEYNG-ALVREAIERELARGGQVYFLYNRVEDIE-----RKAEEISMLVPD--AKV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM +F  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK----DAKHILTQDPDLT 674
            LG +Q G    +     L+  +L+ A +    DA      +P++ 
Sbjct: 982  LGAQQHGFIDSVGFD--LYSQMLKEAIEARKGDAPQAEKFEPEID 1024


>gi|166031178|ref|ZP_02234007.1| hypothetical protein DORFOR_00864 [Dorea formicigenerans ATCC
           27755]
 gi|166029025|gb|EDR47782.1| hypothetical protein DORFOR_00864 [Dorea formicigenerans ATCC
           27755]
          Length = 1114

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 168/619 (27%), Positives = 291/619 (47%), Gaps = 55/619 (8%)

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            E+    I+T  GYI++   + L        ++   T       F +K +  +   +EGR
Sbjct: 384 REVEPGEIMTAYGYIAEGYEYPL-----LNFVVISETDI-----FGKKKKKKRRTTYEGR 433

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK-IIVEALS 180
           KI         ++   +    Y+ H +  +       +Y     + VD   K  +  + +
Sbjct: 434 KI---------QSFSELKPGDYVVHENHGLG------IYQGIEKIEVDKISKDYMKISYA 478

Query: 181 RLPVLPEWIEK---DLLQKK-SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           +   L  +I     DL+QK     S     N +         EWT    +     + +A 
Sbjct: 479 KGGNL--YIPATQLDLIQKYAGSDSKKPKLNRLGT------QEWTKTKAKVRGAVKEIAK 530

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            +  L   +Q +         +    ++     P+  T+ Q  AI  + +DM     M R
Sbjct: 531 DLVELYAARQNQDG--FVYGEDTVWQKEFEEMFPYEETEDQLLAINAVKKDMESHKIMDR 588

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++ GDVG GKT +A+ A   AV+   Q V + P  ILAQQHY    +  ++  + V+++ 
Sbjct: 589 LICGDVGYGKTEIAIRAAFKAVQENKQVVYLVPTTILAQQHYNTFCQRMKDFPVRVDLMC 648

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                A +R  ++ +  G   I++GTH +  D I+Y  L L+I+DE+ RFGVQ + K+ +
Sbjct: 649 RFRTPAQQRDTIQNLKRGLVDIVVGTHRVLSDDIEYKDLGLLIIDEEQRFGVQHKEKIKK 708

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                 VL +TATPIPRTL ++ +G  D+S + E P  R PI+T ++  N  + V E ++
Sbjct: 709 LKKNVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPQDRLPIQTYVMEYND-EMVREAIE 767

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              +   + Y++  ++E+  E            L      +++  HG+M + + E +M  
Sbjct: 768 RECARNGQVYYVYNRVEDIAEVT-----AHIQKLVPEL--NVSFAHGQMKEHELEKIMYD 820

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F NG   +L++TT+IE G+D+ + + +II +A+  GL+QL+QLRGRVGR   ++   LLY
Sbjct: 821 FINGDIDVLVSTTIIETGLDISNVNTMIIHDADRLGLSQLYQLRGRVGRSGRMAYAFLLY 880

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
                L + +  RL+ ++   D   GF IA  DL+ R  G +LG +Q G  + +     +
Sbjct: 881 RKDKLLKEIAEKRLAAIREFTDLGSGFKIAMRDLEIRGAGNLLGAEQHGHMEAVGYD--M 938

Query: 652 HDSLLEIARKDAKHILTQD 670
           +  +L  A K  K  L+++
Sbjct: 939 YCKMLNEAVKHLKGELSEE 957


>gi|227542464|ref|ZP_03972513.1| transcription-repair coupling factor [Corynebacterium
            glucuronolyticum ATCC 51866]
 gi|227181662|gb|EEI62634.1| transcription-repair coupling factor [Corynebacterium
            glucuronolyticum ATCC 51866]
          Length = 1218

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 144/474 (30%), Positives = 239/474 (50%), Gaps = 20/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++  +  + +A ++  L  +++     G     +     ++  N P+  T+ Q 
Sbjct: 582  DWKKTKKKARSAVKEIAAELVDLYAKRRAA--PGHAFAPDSPWQAEMEDNFPYVETEDQM 639

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  +  DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 640  LAIDAVKHDMEQPVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHE 699

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++      I +  ++   P    R+ ++ +  G   I+IGTH L Q  +Q+  L LV
Sbjct: 700  ATFRERMDGFGITIRQLSRFTPDKQAREIIKGLVDGSVDIVIGTHRLLQTGVQWKDLGLV 759

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +        VL M+ATPIPRTL ++  G  +++ I   P  R+P+
Sbjct: 760  IVDEEQRFGVEHKEHIKALRAHVDVLTMSATPIPRTLEMSMSGIREMTTILTPPQDRRPV 819

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T +       +V   ++  L    + +++  ++        +S+ ER   L E    + 
Sbjct: 820  LTYVGAQED-KQVAAAIRRELLRDGQVFYVHNRV--------KSIEERARQLRELVPEAR 870

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLH
Sbjct: 871  IVVAHGQMSEEQLEKTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLH 930

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR  E +    LY     L++ SY RL+ +    D   G  +A +DL+ R  G 
Sbjct: 931  QLRGRVGRSRERAYAYFLYPKGQVLTETSYERLTTIAQNNDMGAGMAVAMKDLEMRGAGN 990

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP-DLTSVRGQSIRILL 685
            +LG +QSG         +L+  L+E A +  + +    P D T  +   IR+ L
Sbjct: 991  VLGAEQSGHI--AGVGFDLYVRLVEEAVEAFRALADGKPLDATDQQSAEIRVDL 1042


>gi|306992341|gb|ADN19287.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 165/451 (36%), Positives = 265/451 (58%), Gaps = 8/451 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  KDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           F NG   +L++TTVIEVG++V +A+++I+EN
Sbjct: 416 FANGKIDILVSTTVIEVGVNVPNATVMIVEN 446


>gi|262376147|ref|ZP_06069377.1| transcription-repair coupling factor [Acinetobacter lwoffii SH145]
 gi|262308748|gb|EEY89881.1| transcription-repair coupling factor [Acinetobacter lwoffii SH145]
          Length = 1152

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 148/473 (31%), Positives = 241/473 (50%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    R+ L     +A ++  +  R+  K   GI   V+  +  +      +  T  Q +
Sbjct: 555  WNKAKRKALEQIHDVAAELLHIQARRSSK--PGISFEVDQSLYMQFASGFAYEETLDQAN 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  I+ P  +LAQQHY+
Sbjct: 613  AIEATLHDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNNRQVAILVPTTLLAQQHYD 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K    +  + +E+++         K ++ +  G+  I+IGTH + Q+++Q+  L L+I
Sbjct: 673  SFKDRFADWPVRIEVLSRFGSSKAHTKTIDDLIEGKVDIVIGTHKILQENVQFKNLGLMI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733  VDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +  D + E +   L  G + Y++  +++           E    L     + + 
Sbjct: 793  TFV-QEHTDDTIKEAILRELLRGGQVYFLHNEVDTID-----RAAEHIRKLVPE--ARVI 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F +    +L+ +T+IE GIDV +A+ I+IE A+  GLAQLHQL
Sbjct: 845  VAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQLHQL 904

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   L+      L  ++  RL  ++       GF++A EDL+ R  GE+L
Sbjct: 905  RGRVGRSHHQAYAYLMVPSLKALKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A K  +    + P+  +    +  I L++
Sbjct: 965  GEQQSGSMQAIGYS--LYMEMLEKATKAIQK--GKTPNFDAPLSLTAEITLHM 1013


>gi|256822363|ref|YP_003146326.1| transcription-repair coupling factor [Kangiella koreensis DSM 16069]
 gi|256795902|gb|ACV26558.1| transcription-repair coupling factor [Kangiella koreensis DSM 16069]
          Length = 1140

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 149/498 (29%), Positives = 247/498 (49%), Gaps = 20/498 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            +Q           N    P  K    +W    ++       +A ++  +  R+  K+ I 
Sbjct: 520  VQSLHLIGRYSGTNPELAPWHKLGTEQWDKARQKAAEKARDVAAELLDIYARRAAKEGIQ 579

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
              +  +    ++      F  T  Q ++I  +++DM+    M R++ GDVG GKT VAL 
Sbjct: 580  YQL--DETEYRRFCAEFAFEETVDQTTSINAVIRDMTSHLPMDRLVCGDVGFGKTEVALR 637

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A   A ++G Q  ++ P  +LAQQH+E       +  + V  ++        +  L+ + 
Sbjct: 638  AAFIAAQSGKQVAVLVPTTLLAQQHFETFSDRFADWPMKVASLSRFATSKEVQATLKGLE 697

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   I++GTH L Q  +++ +L L+I+DE+HRFGV+Q+ +L +  T   +L +TATPIP
Sbjct: 698  DGTVDIVVGTHKLIQQDVKFKRLGLLIIDEEHRFGVRQKEQLKKFRTEVDILTLTATPIP 757

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL ++  G  D+S I   PA R  +KT +   ++   + E +   +  G + Y++   +
Sbjct: 758  RTLNMSMSGMRDLSIIATPPARRLSVKTFVREYHK-PLIREAILREVLRGGQVYFLHNAV 816

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            +       +  VE    L     + I + HG+M + + E VM  F +    +L+ TT++E
Sbjct: 817  DTI-----QRTVEELQELLPE--ARIQLAHGQMRERELEQVMRDFYHQRFNVLVCTTIVE 869

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID  +A+ +II+ A+ FGLAQLHQLRGRVGR    +   LL      ++K++  RL  
Sbjct: 870  TGIDNPNANTMIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPAGRKITKDAEKRLDA 929

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ED   GF +A  DL+ R  GE+LG +QSG  + +     +   +LE A K  K   
Sbjct: 930  IASLEDLGAGFTLATHDLEIRGAGELLGDEQSGQMQAVGFNLYMD--MLEDAVKALKE-- 985

Query: 668  TQDPDLTSVRGQSIRILL 685
             ++P L     Q   I L
Sbjct: 986  GKEPSLQQSLKQKTEIDL 1003


>gi|258612325|ref|ZP_05711832.1| transcription-repair coupling factor [Listeria monocytogenes F6900]
 gi|258610889|gb|EEW23497.1| transcription-repair coupling factor [Listeria monocytogenes F6900]
          Length = 709

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 142/452 (31%), Positives = 240/452 (53%), Gaps = 19/452 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T+ Q 
Sbjct: 103 EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSADDEMQREFEEAFPYQETEDQL 160

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 161 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 220

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 221 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 280

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 281 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 340

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +   N +  V E ++  L+   + Y++  ++E        S+ ++ + +      + 
Sbjct: 341 QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVE--------SITQKADEISAMVPDAR 391

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+
Sbjct: 392 VATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLY 451

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGRVGR   I+    +Y     L + +  RLS +K       GF IA  DL  R  G 
Sbjct: 452 QLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGN 511

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           ILG +Q G    +     L+  +L+ A +  K
Sbjct: 512 ILGAQQHGFIDSVGFD--LYSQMLKEAIEAKK 541


>gi|167766179|ref|ZP_02438232.1| hypothetical protein CLOSS21_00673 [Clostridium sp. SS2/1]
 gi|167712259|gb|EDS22838.1| hypothetical protein CLOSS21_00673 [Clostridium sp. SS2/1]
          Length = 1173

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 137/462 (29%), Positives = 230/462 (49%), Gaps = 17/462 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW           + +A ++  L   +Q K+      + +    ++     P+  T+ Q 
Sbjct: 576  EWKKTKTRVKGQVKDIAEELVQLYALRQAKEG--YVYDKDTVWQKEFEELFPYDETQDQL 633

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI D  +DM  K  M R++ GDVG GKT VA+ A   AV+ G Q   + P  ILAQQHY
Sbjct: 634  NAIDDTKRDMESKKIMDRLICGDVGYGKTEVAIRAAFKAVDNGKQVAYLVPTTILAQQHY 693

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +   +  I V +++       +++ +E + +G   ++IGTH L    +QY  L L+
Sbjct: 694  NTFAQRFHDYPITVRMMSRFCTAKEQKETIEGLKNGTVDVVIGTHRLLSKDMQYKNLGLL 753

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV  + K+        VL ++ATPIPRTL ++ +G  D+S + E P  R+ I
Sbjct: 754  VIDEEQRFGVTHKEKIKTMKKDVDVLSLSATPIPRTLHMSLIGIRDMSVLEEPPHDRRAI 813

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + V E +   ++ G + Y++  ++    E            L     + +
Sbjct: 814  QTYVMEYNE-ELVKEAVYREMTRGGQVYYVYNRVNNIAEVT-----AELQRLLPD--AKV 865

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M + + E +M  F N    +L++TT+IE G+D+ + + +II +A   GL+QL+Q
Sbjct: 866  AFAHGQMKERELEEIMMGFMNHEIDVLVSTTIIETGLDIPNVNTMIIHDANQLGLSQLYQ 925

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L+Y     L + +  RL  ++   D   G+ IA  DL+ R  G +
Sbjct: 926  LRGRVGRSNRNAFAFLMYKKNTLLKETAEKRLQAIREFTDLGSGYKIAMRDLEIRGAGNL 985

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
            LG  QSG  + +     L+  +L  A    K  L  + +  +
Sbjct: 986  LGQAQSGHMEAVGYD--LYCKMLNEAVLRLKGELKDEDEFDT 1025


>gi|270290199|ref|ZP_06196425.1| transcription-repair coupling factor [Pediococcus acidilactici 7_4]
 gi|270281736|gb|EFA27568.1| transcription-repair coupling factor [Pediococcus acidilactici 7_4]
          Length = 1165

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 233/448 (52%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    +   +  E +A  +  L  +++ +   G     +  +  +   + P++ T  Q 
Sbjct: 567  DWAKTKQHVASKIEDIADDLIELYAKREAE--KGFAFPPDDDLQLQFENDFPYTETPDQL 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +IK++ +DM +   M R+L GDVG GKT VAL A   A+E G Q  I+ P  ILAQQH+
Sbjct: 625  RSIKEVKEDMEKPRPMDRLLVGDVGYGKTEVALRAAFKAIEGGKQVAILVPTTILAQQHF 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +     +  I   +++     A  ++AL  +  G   I++GTH L    + +  L L+
Sbjct: 685  DTMNDRFGDYPITTAMLSRFQTNAQIKEALAGLKDGTIDIVVGTHRLLSKDVHFKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + ++    +   VL +TATPIPRTL ++ +G  D+S I   P  R PI
Sbjct: 745  VIDEEQRFGVKHKERIKALRSQVDVLTLTATPIPRTLNMSMIGVRDLSVIETPPTNRYPI 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E +   +    + +++  ++++ +      VV +  +L     + +
Sbjct: 805  QTYVVEEN-AGIIREGIMREIRRDGQVFFLHNRVQDIE-----KVVAQIEALVPE--ARV 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A IHG+M++   E ++  F  G   +L+ TT+IE GID+ +A+ + +ENA+H GL+QL+Q
Sbjct: 857  AYIHGQMTEKQLEDILFDFIEGEYDVLVTTTIIETGIDIPNANTLFVENADHMGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++    LY     L++    RL  +K+      GF IA  DL  R  G +
Sbjct: 917  LRGRIGRSSRVAYAYFLYQKDRVLTELGEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L  A K
Sbjct: 977  LGKQQHGFIDSVGYD--LYSQMLADAVK 1002


>gi|217970622|ref|YP_002355856.1| transcription-repair coupling factor [Thauera sp. MZ1T]
 gi|217507949|gb|ACK54960.1| transcription-repair coupling factor [Thauera sp. MZ1T]
          Length = 1157

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 153/473 (32%), Positives = 235/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++        A ++  L  ++  +   G   + +    +       F  T  Q+
Sbjct: 563  QWEKAKKKAAMQVRDTAAELLALYAQRAAR--PGHRFDFKQHDLEAFAEAFGFETTPDQQ 620

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM     M R++ GDVG GKT VAL A   AV  G Q V++ P  +LA+QHY
Sbjct: 621  AAIDAVVADMKSGRPMDRLVCGDVGFGKTEVALRAAFIAVADGKQVVVLCPTTLLAEQHY 680

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  I +  ++       + +AL+ +A G+  IIIGTH L Q  + + +L LV
Sbjct: 681  QTFADRFADWPIKLAELSRFKSAKEQAEALQLLAEGKVDIIIGTHRLLQKDVIFKRLGLV 740

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L Q  +   +L +TATPIPRTL L   G  + S I   P  R  I
Sbjct: 741  IIDEEHRFGVRQKEALKQLRSEVDILTLTATPIPRTLGLAMEGLREFSVIATAPQKRLAI 800

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT + P +R   + E +      G + Y++  +++        ++ +    L     + I
Sbjct: 801  KTFVQPSSR-GLIREAVLREFKRGGQVYFLHNEVDTID-----NMKDDLEELLPE--ARI 852

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG++ + + E VM  F      LL+ TT+IE GI++  A+ III  A+ FGLAQLHQ
Sbjct: 853  VVGHGQLPERELERVMRDFTQQRANLLLCTTIIETGINIPTANTIIINRADRFGLAQLHQ 912

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL  P    S  +  RL  +   ED   GF +A  DL+ R  GE+
Sbjct: 913  LRGRVGRSHHQAYAYLLTQPGAKPSAQAQKRLEAIAMMEDLGSGFYLAMHDLEIRGAGEV 972

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG  QSG  +       L+  +L+ A KD +    ++PDL+        I L+
Sbjct: 973  LGENQSG--EIQQVGFSLYTEMLKRAVKDLQA--GKEPDLSQPLEVVSEINLH 1021


>gi|304385533|ref|ZP_07367877.1| transcription-repair coupling factor [Pediococcus acidilactici DSM
            20284]
 gi|304328037|gb|EFL95259.1| transcription-repair coupling factor [Pediococcus acidilactici DSM
            20284]
          Length = 1165

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 233/448 (52%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    +   +  E +A  +  L  +++ +   G     +  +  +   + P++ T  Q 
Sbjct: 567  DWAKTKQHVASKIEDIADDLIELYAKREAE--KGFAFPPDDDLQLQFENDFPYTETPDQL 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +IK++ +DM +   M R+L GDVG GKT VAL A   A+E G Q  I+ P  ILAQQH+
Sbjct: 625  RSIKEVKEDMEKPRPMDRLLVGDVGYGKTEVALRAAFKAIEGGKQVAILVPTTILAQQHF 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +     +  I   +++     A  ++AL  +  G   I++GTH L    + +  L L+
Sbjct: 685  DTMNDRFGDYPITTAMLSRFQTNAQIKEALAGLEDGTIDIVVGTHRLLSKDVHFKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + ++    +   VL +TATPIPRTL ++ +G  D+S I   P  R PI
Sbjct: 745  VIDEEQRFGVKHKERIKALRSQVDVLTLTATPIPRTLNMSMIGVRDLSVIETPPTNRYPI 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E +   +    + +++  ++++ +      VV +  +L     + +
Sbjct: 805  QTYVVEEN-AGIIREGIMREIRRDGQVFFLHNRVQDIE-----KVVAQIEALVPE--ARV 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A IHG+M++   E ++  F  G   +L+ TT+IE GID+ +A+ + +ENA+H GL+QL+Q
Sbjct: 857  AYIHGQMTEKQLEDILFDFIEGEYDVLVTTTIIETGIDIPNANTLFVENADHMGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++    LY     L++    RL  +K+      GF IA  DL  R  G +
Sbjct: 917  LRGRIGRSSRVAYAYFLYQKDRVLTELGEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L  A K
Sbjct: 977  LGKQQHGFIDSVGYD--LYSQMLADAVK 1002


>gi|319779214|ref|YP_004130127.1| Transcription-repair coupling factor [Taylorella equigenitalis MCE9]
 gi|317109238|gb|ADU91984.1| Transcription-repair coupling factor [Taylorella equigenitalis MCE9]
          Length = 1158

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 141/473 (29%), Positives = 225/473 (47%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++        A ++  L   +  ++     I +E            F  T  Q+
Sbjct: 558  QWEKACKKAAKQVRDTAAELLNLYALRAMREGYKFKIPLEDYHQ--FSEGFDFEETPDQQ 615

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  +L+DM+    M R++ GDVG GKT VAL A   AV    Q VI+ P  +LA+QH 
Sbjct: 616  QAIDSVLEDMASDKPMDRLVCGDVGFGKTEVALRAAFIAVANNKQVVILCPTTLLAEQHA 675

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  I V +++         + +   + G   I+IGTH +  + +++  L L+
Sbjct: 676  QTFIDRFADWPINVALLSRFRTGKELNETINGCSDGNVDIVIGTHKVLSNKVKFKSLGLI 735

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        +L +TATPIPRTL ++  G  D+S I   P  R  I
Sbjct: 736  IIDEEHRFGVRQKEALKALRAEVDILTLTATPIPRTLSMSLEGIRDLSIIATAPQKRLAI 795

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +   ++   + E +   L  G + Y++  +++        +       L     + I
Sbjct: 796  KTFVRREDK-STIREAVLRELKRGGQLYFLHNEVDTIH-----NRKAMLEELLPE--ARI 847

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS+ + E+VM  F +    LL+ TT+IE GIDV  A+ III  A+  GLAQLHQ
Sbjct: 848  GVAHGQMSERELEAVMKDFYHQRINLLLCTTIIETGIDVPTANTIIINRADKLGLAQLHQ 907

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSY---TRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL      +++ +      +  ++    GF +A  DL+ R  GE+
Sbjct: 908  LRGRVGRSHHQAYAYLLTPGDEAITRQAKMRLEAIQAMEELGAGFYLAMHDLEIRGTGEV 967

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG +QSG          L+  +L       K+   ++P+L S       I L+
Sbjct: 968  LGEQQSGNIH--EVGFTLYADMLNKTMDALKN--GKEPNLESPFDLGTEINLH 1016


>gi|306992389|gb|ADN19311.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 446

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 165/451 (36%), Positives = 265/451 (58%), Gaps = 8/451 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  KDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           F NG   +L++TTVIEVG++V +A+++I+EN
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVEN 446


>gi|27469198|ref|NP_765835.1| transcription-repair coupling factor [Staphylococcus epidermidis ATCC
            12228]
 gi|81842450|sp|Q8CMT1|MFD_STAES RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|27316747|gb|AAO05922.1|AE016751_217 transcription-repair coupling factor [Staphylococcus epidermidis ATCC
            12228]
          Length = 1169

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 156/477 (32%), Positives = 241/477 (50%), Gaps = 22/477 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +  +G     +         + P+  T  Q 
Sbjct: 568  EWKKTKAKVQQSVEDIADELIDLY--KEREMSVGYQYGQDTAEQSAFEHDFPYELTPDQS 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 626  KSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        R+  E +  G   I++GTH L    IQY  L L+
Sbjct: 686  ETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 746  IVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 806  QTYVLEQN-TNFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQRLMPD--ANI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+Q
Sbjct: 858  AVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSSRIGYAYFLHPANKVLNETAEERLQTIKEFTELGSGFKIAMRDLNIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            LG +Q G    +     L+  +LE A  + + I  + PD        I + L+L  Y
Sbjct: 978  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGIKEESPD-----APDIEVELHLDAY 1027


>gi|169824178|ref|YP_001691789.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328]
 gi|167830983|dbj|BAG07899.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328]
          Length = 1168

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 143/439 (32%), Positives = 233/439 (53%), Gaps = 18/439 (4%)

Query: 231  DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            DE+    + L   R + K       + + +  ++   + P+  T SQ  +I++I  DM  
Sbjct: 588  DEMADDLVELYSKRAKLKG---YQFSQDTEWQREFEDSFPYEETDSQVRSIEEIKADMES 644

Query: 291  KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
               M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQH+  IK+  ++  I
Sbjct: 645  DRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVAFLVPTTILAQQHFNTIKERFRDYPI 704

Query: 351  IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             VE+++  +  A +++ ++ +  G   +++GTH +   ++++  L L+++DE+ RFGV+ 
Sbjct: 705  RVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGVRH 764

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            + KL        VL ++ATPIPRTL +   G  D+S + E P  R PI T +   N    
Sbjct: 765  KEKLKSMRENVDVLTLSATPIPRTLQMGLTGIRDMSLLEEPPEDRTPISTYVTEYN-PSL 823

Query: 471  VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            + + +   L  G + Y++  +IE+  +  F+        L      +IAI HGRM++ + 
Sbjct: 824  IRDAIIRELDRGGQIYFVYNRIEDIDQMEFK-----LKELVPEL--NIAIAHGRMNEKEL 876

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E+VM  F++G   LL+ TT+IE G+D+ + + +II NA+  GL+QL+QL+GR+GR +  S
Sbjct: 877  ENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKMGLSQLYQLKGRIGRSDRTS 936

Query: 591  SCILLY--HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
                 Y     L++ S  RL  +K       GF IA  DL+ R  G +LG  Q G    +
Sbjct: 937  FAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRDLELRGAGNLLGESQHGHIAKI 996

Query: 646  IAQPELHDSLLEIARKDAK 664
                 L+  LLE A ++AK
Sbjct: 997  GYD--LYVKLLEQAVREAK 1013


>gi|306992273|gb|ADN19253.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 446

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 165/451 (36%), Positives = 265/451 (58%), Gaps = 8/451 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           F NG   +L++TTVIEVG++V +A+++I+EN
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVEN 446


>gi|306992329|gb|ADN19281.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 165/451 (36%), Positives = 265/451 (58%), Gaps = 8/451 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           F NG   +L++TTVIEVG++V +A+++I+EN
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATVMIVEN 446


>gi|282850862|ref|ZP_06260236.1| putative ATP-dependent DNA helicase RecG [Lactobacillus gasseri
           224-1]
 gi|282557814|gb|EFB63402.1| putative ATP-dependent DNA helicase RecG [Lactobacillus gasseri
           224-1]
          Length = 401

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 161/400 (40%), Positives = 254/400 (63%), Gaps = 5/400 (1%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+LQGDVGSGKT+VA+ A+ A + AG QA +M P  ILAQQH+  + +  +   + V 
Sbjct: 1   MKRLLQGDVGSGKTVVAVFAIYATITAGFQAALMVPTEILAQQHFAKVDELLRPLGVRVA 60

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG+  +  +++    +A G  +++IGTHAL Q  + +  L LVI+DEQHRFGV QR  
Sbjct: 61  LLTGDTKELEKKEIYRELADGTINVVIGTHALIQKDVHFKNLGLVIIDEQHRFGVNQRNT 120

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L +K  AP VL MTATPIPRTL LT  GD+ +S+I   P GRKP+ +     +++ EV+E
Sbjct: 121 LIKKGVAPDVLAMTATPIPRTLALTVYGDMAVSEIRHLPKGRKPVVSSWATSSKLKEVLE 180

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKES 532
            ++  L +G + Y + P I E ++S+ ++  +    L  +F   ++ ++HG+M    K  
Sbjct: 181 LMRSQLEKGFQIYVVTPLISESEKSDLKNAEDLQARLAHYFKDENVVLLHGQMKGDQKNE 240

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +MDSF  G   +L+ T+VIEVG+DV +A++++I NA+ FGL+QLHQLRGR+GRG+  S C
Sbjct: 241 IMDSFAAGKIDILVTTSVIEVGVDVPNANMMVIFNADRFGLSQLHQLRGRIGRGQTQSFC 300

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           + +  P  ++    R++++ +T +GF +AEEDLK R EG++ G  QSG+P+F +      
Sbjct: 301 VFVSDPK-TEIGKKRMNIITSTSNGFKLAEEDLKLRGEGDVFGKAQSGLPQFQVGDVVND 359

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            + L  A+K+A+ ++  DP+L        + LL + +Y +
Sbjct: 360 YNTLVTAQKEARALVKADPNLERPEN---KFLLEVLKYKK 396


>gi|149371008|ref|ZP_01890603.1| transcription-repair coupling factor [unidentified eubacterium
           SCB49]
 gi|149355794|gb|EDM44352.1| transcription-repair coupling factor [unidentified eubacterium
           SCB49]
          Length = 1115

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 140/451 (31%), Positives = 231/451 (51%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++  A  + +A  +  L  +++ +   G   N +  +  ++  +  F  T  Q +
Sbjct: 504 WKKLKQKTKARVKHIAFNLIELYAKRRTQ--KGFQYNPDSYLQHELESSFMFEDTPDQST 561

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM  +  M R++ GDVG GKT VA+ A   AV+ G Q  I+ P  ILA QH+ 
Sbjct: 562 ATADVKADMESERPMDRLVCGDVGFGKTEVAVRAAFKAVDNGKQVAILVPTTILAYQHFN 621

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +      + V+ +        RR  LE +  G+  I+IGTH L   S+++  L L+I
Sbjct: 622 TFSERLSGMPVTVDYLNRFRTAKERRTVLEGLKDGKIDIVIGTHQLVSKSVEFKDLGLLI 681

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL         L +TATPIPRTL  + +   D+S IT  P  R P++
Sbjct: 682 IDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLSVITTPPPNRHPVE 741

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T ++   + + + + ++  +S G + +++  +I+  KE            L     + I 
Sbjct: 742 TQVVRFEQ-ELIRDAVRYEISRGGQTFFVHNRIDNIKEVAG-----MIQRLVPD--AKIG 793

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E++M SF N    +L+ATT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 794 IGHGQMDGKKLEALMLSFMNNEFDVLVATTIIESGLDVSNANTIFINNANNFGLSDLHQM 853

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   ++ ++  R++ L+   D   G  IA +DL+ R  G++L
Sbjct: 854 RGRVGRSNKKAFCYFITPPYSAMTDDARKRMTALEQFSDLGSGINIAMKDLEIRGAGDLL 913

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG    +    E +  +L  A  + K 
Sbjct: 914 GGEQSGFINEI--GFETYQKILAEAIDELKE 942


>gi|86130975|ref|ZP_01049574.1| transcription-repair coupling factor [Dokdonia donghaensis MED134]
 gi|85818386|gb|EAQ39546.1| transcription-repair coupling factor [Dokdonia donghaensis MED134]
          Length = 1159

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 136/471 (28%), Positives = 235/471 (49%), Gaps = 18/471 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +  +  + +A  +  L  +++ +   G     +  +  ++  +  +  T  Q S
Sbjct: 532 WKKLKAKTKSKVKHIAFNLIKLYAKRRLQ--KGYAFGPDTHMQHELEASFIYEDTPDQSS 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             +D+ +DM     M R++ GDVG GKT VA+ A   AV+ G Q  I+ P  ILA QH  
Sbjct: 590 VTEDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAILVPTTILAYQHAR 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  +   + VE +        +R+ L  +  G   I+IGTH L   ++ +  L L++
Sbjct: 650 TFKERLKGFPVTVEYLNRFRTAKEKREVLAGLESGAVDIVIGTHQLTSKNVIFKDLGLLV 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL   +     L +TATPIPRTL  + +   D+S IT  P  R PI+
Sbjct: 710 IDEEQKFGVAVKDKLKTISETVDTLTLTATPIPRTLQFSLMAARDLSTITTPPPNRYPIE 769

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + ++  +  + + + +   +  G + ++I  +IE  KE            L     + + 
Sbjct: 770 SNVVRFSE-EVIRDAVSYEIQRGGQVFFIHNRIENIKEVAG-----LIQRLVPD--AKVG 821

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M     E+ M SF NG   +L++TT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 822 VGHGQMEGKALEAKMLSFMNGEFDVLVSTTIIESGLDVPNANTIFINNANNFGLSDLHQM 881

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   +++++  R+  L+       GF IA +DL+ R  G++L
Sbjct: 882 RGRVGRSNKKAFCYFITPPYSVMTEDARKRIQALEQFSVLGSGFNIAMKDLEIRGAGDLL 941

Query: 635 GIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           G +QSG      F   Q  L++++ E+   +   +   DP       + ++
Sbjct: 942 GGEQSGFINEIGFDTYQKILNEAIDELKEDEFAELYKDDPAFAKEEREYVK 992


>gi|325689360|gb|EGD31366.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK115]
          Length = 1167

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 146/452 (32%), Positives = 239/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     + +A  +  L    +  +  G   + +    ++   + P+  
Sbjct: 559 KLNDGRFQKSKQKVQHQVQDIADDLIKLYA--ERSQLKGFAFSADDSNQEEFDNDFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I+++ +DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 617 TEDQLRSIQEVKKDMESSRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  + VE+++    +A +++ L+++  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHYTNFKERFNDFAVNVEVLSRFRSKAEQKQTLDKLQRGQVDIIIGTHRLLSKDVEFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIIIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 797 NRYPVQTYVLESNPT-VIREAVLREIDRGGQVYYLYNKVDTIE--------QKVSELREL 847

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H G
Sbjct: 848 IPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLIYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGSMQSGFID--SVGFEMYSQLLEEA 997


>gi|256848382|ref|ZP_05553825.1| transcription-repair coupling factor [Lactobacillus coleohominis
            101-4-CHN]
 gi|256714980|gb|EEU29958.1| transcription-repair coupling factor [Lactobacillus coleohominis
            101-4-CHN]
          Length = 1179

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 141/446 (31%), Positives = 231/446 (51%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R      E +AG +  L    Q K   G     +  + +K     P+S TK Q 
Sbjct: 569  EWAKTKRRVAQKVENIAGDLVDLYA--QRKTAKGFAYPKDDYLQEKFDHEFPYSETKDQL 626

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I ++  DM +   M R+L GDVG GKT VAL A+  AV  G Q   + P  ILAQQHY
Sbjct: 627  RSINEVKADMEKPKPMDRLLVGDVGYGKTEVALRAIFKAVTGGKQVAFLVPTTILAQQHY 686

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +++  +   + +E+++        +   + +A G   +++GTH L    + +  L L+
Sbjct: 687  DTMRERFEGFPVKIEMMSRFRTPKQMKTIEKGLADGSIDVVVGTHRLLSKDVHFKDLGLL 746

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + KL Q  +   VL +TATPIPRTL ++ LG  D+S +   P GR PI
Sbjct: 747  IIDEEQRFGVKHKEKLKQLKSNVDVLTLTATPIPRTLHMSMLGVRDLSVLETPPVGRFPI 806

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + + +   +  G + Y++  ++ + +      VV    +L     + +
Sbjct: 807  QTYVLEQN-WSAIRDGILREMKRGGQVYYLHNRVNDIE-----RVVNEIETLVPE--ARV 858

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A IHG+MS+   E V+  F  G   +L+ T++IE G+D+ + + + +ENA+  GLAQL+Q
Sbjct: 859  ADIHGQMSEAQLEGVLYDFIRGEYDVLVTTSIIETGVDIPNVNTLFVENADRMGLAQLYQ 918

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            +RGR+GR   ++    +Y P   L++    RL+ +++      GF IA  DL  R  G +
Sbjct: 919  IRGRIGRSNRVAYAYFMYQPNKVLTEPGEKRLAAIRDFTELGSGFKIAMRDLAIRGAGNL 978

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G    +     L+  +L  A
Sbjct: 979  LGKQQHGFIDSVGYD--LYSDMLADA 1002


>gi|116333178|ref|YP_794705.1| transcription-repair coupling factor [Lactobacillus brevis ATCC 367]
 gi|116098525|gb|ABJ63674.1| Transcription-repair coupling factor (superfamily II helicase)
            [Lactobacillus brevis ATCC 367]
          Length = 1180

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 143/446 (32%), Positives = 233/446 (52%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +  A  E +A ++  L  ++  +   G    V+  +      + P++ T  Q 
Sbjct: 568  EWAKTKSKVAAKIEDIADELVDLYAKRSAE--KGYAFPVDDSLQHDFENDFPYAETPDQL 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I+++  DM +   M R+L GDVG GKT VAL A   AVEAG Q   + P  ILAQQHY
Sbjct: 626  RTIEEVKHDMEKPRPMDRLLVGDVGYGKTEVALRAAFKAVEAGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +    +   I VE+ +         +A++ +  GQ  I++GTH L    +++  L LV
Sbjct: 686  DTMVSRFEGYPINVEMFSRFRTTKQIHQAIKDLETGQLDIVVGTHRLLSQDVKFKNLGLV 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 746  LVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPI 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + + ++  +  G + +++  ++++ +++  +        L     + +
Sbjct: 806  QTYVMEQN-AGAIQDGIRREMQRGGQVFYLHNRVDDIEKTVGQ-----IQVLVPE--ARV 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              IHG+M++   E V+  F  G   +L+ TT+IE GID+ +A+ + +ENA+  GL+QL+Q
Sbjct: 858  GYIHGKMTEAQLEGVLFDFLRGDYDVLVTTTIIETGIDIPNANTLFVENADRMGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++     Y P   L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 918  LRGRIGRSNRVAYAYFTYQPNKVLTEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G    +     L+  +L  A
Sbjct: 978  LGKQQHGFINSVGYD--LYTQMLSDA 1001


>gi|163753497|ref|ZP_02160621.1| transcription-repair coupling factor [Kordia algicida OT-1]
 gi|161327229|gb|EDP98554.1| transcription-repair coupling factor [Kordia algicida OT-1]
          Length = 1095

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 143/486 (29%), Positives = 244/486 (50%), Gaps = 24/486 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++  A  + +A  +  L  +++ +K I      +  +  ++  +  +  T  Q  
Sbjct: 486 WKKLKQKTKARVKHIAYNLIELYAKRRMQKGIQY--GPDTHLQHELEASFIYEDTPDQSK 543

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D+  DM  +  M R++ GDVG GKT VA+ A   AV+ G Q  I+ P  ILA QH++
Sbjct: 544 ATQDVKADMESERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAILVPTTILAFQHFK 603

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +   I ++ +        R + L+ +  G   I+IGTH L   ++++  L L+I
Sbjct: 604 TFSERLKEMPITIDYLNRFRSTKQRNEVLKGLEDGSVDIVIGTHQLVNKAVKFKDLGLLI 663

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL         L +TATPIPRTL  + +   D+S IT  P  R PI+
Sbjct: 664 VDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIE 723

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +I   + + + + +   +  G + ++I  +IE  KE            L     + I 
Sbjct: 724 THVIRF-QEETIRDAVSYEIQRGGQVFFIHNRIENIKEVAG-----MIQRLVPD--AKIG 775

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E +M +F NG   +L++TT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 776 IGHGQMEGKKLEKLMLAFMNGEFDVLVSTTIIESGLDVPNANTIFINNANNFGLSDLHQM 835

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   +++++  R++ L        GF IA +DL+ R  G++L
Sbjct: 836 RGRVGRSNKKAFCYFITPPDSVMTQDARKRINALVQFSTLGSGFNIAMKDLEIRGAGDLL 895

Query: 635 GIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
           G +QSG      F   Q  L++++ E+   + K +  +         +  ++ L   Q +
Sbjct: 896 GGEQSGFINEIGFDTYQKILNETIEELKENEFKELYEEQ------ESKKEKVFLKETQID 949

Query: 692 EAFQFI 697
             F+ +
Sbjct: 950 TDFELL 955


>gi|313889521|ref|ZP_07823167.1| transcription-repair coupling factor [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313122133|gb|EFR45226.1| transcription-repair coupling factor [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 1166

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 151/451 (33%), Positives = 241/451 (53%), Gaps = 17/451 (3%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L +  +  +  G   + + ++      + PF  
Sbjct: 555 KLNDGRFQKTKQKVSKQVEDIADDL--LRLYAERSQLKGFQFSPDDELQASFDNDFPFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I++I +DM  +  M R+L GDVG GKT VA+ A   AV+   Q  I+ P  +L
Sbjct: 613 TEDQLRSIQEIKKDMESQRPMDRLLVGDVGFGKTEVAMRAAFKAVKDHKQVAILVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY+  ++  +N  I V++++    +  +  +LE++A GQ  IIIGTH L    +Q+ 
Sbjct: 673 AQQHYDNFRERFENYPIKVDVLSRFRSKKEQNTSLEKLAKGQVDIIIGTHRLLSKDVQFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKEKLKELKNKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++   +   +        L   
Sbjct: 793 NRYPVQTYVLETN-PSLVREAILREMDRGGQVFYVYNKVDTIDKKVSQ-----LQELVPE 846

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             ++I  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + +ENA+H GL
Sbjct: 847 --AAIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENADHMGL 904

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQR 628
           + L+QLRGRVGR   I+   L+Y P   LS+ S  RL  +K       GF IA  DL  R
Sbjct: 905 STLYQLRGRVGRSNRIAYAYLMYRPDKVLSEISDKRLEAIKGFTELGSGFKIAMRDLAIR 964

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G ILG  QSG         E++  LLE A
Sbjct: 965 GAGNILGASQSGFID--SVGFEMYSQLLEEA 993


>gi|220930453|ref|YP_002507362.1| transcription-repair coupling factor [Clostridium cellulolyticum H10]
 gi|220000781|gb|ACL77382.1| transcription-repair coupling factor [Clostridium cellulolyticum H10]
          Length = 1174

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 137/451 (30%), Positives = 236/451 (52%), Gaps = 21/451 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW           + LA ++  L  ++Q     G   + +    ++     P+  T  Q 
Sbjct: 576  EWAKTKSRVKESLQQLAAELIKLYAQRQSA--KGHSFSEDTVWQRQFEELFPYQETDDQL 633

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I +I +DM  +  M R+L GDVG GKT VA+ A+  AV  G Q   +AP  ILAQQ Y
Sbjct: 634  KCIDEIKKDMESEGLMDRLLCGDVGYGKTEVAIRAVFKAVMDGKQVAYLAPTTILAQQLY 693

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  K    +  + V++++     A ++K ++ +  G   I+IGTH L Q  +++  L L+
Sbjct: 694  ENFKTRMNDFPVTVDVMSRFRTPAEQKKIVKSVKAGNTDILIGTHRLLQKDVEFKDLGLL 753

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV  + KL        VL +TATPIPRTL ++ +G  DIS + + P  R P+
Sbjct: 754  VIDEEQRFGVTHKEKLKTLKPNVDVLTLTATPIPRTLHMSLVGIRDISVLEDPPEERYPV 813

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFTS 516
            +T ++  N ++ + + +   ++   + +++  ++   + K    R ++           +
Sbjct: 814  QTYVMEYN-MELIRDGIIREMARDGQVFYMYNRVRGIDLKAQEIRKMIP---------DA 863

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             +A+ HG+M++ + E VM  F NG   +L+ TT+IE G+D+ + + I++E+A+  GL+QL
Sbjct: 864  RVAVAHGKMNEKELEDVMYGFINGEYDVLVCTTIIESGLDMPNVNTIVVEDADRMGLSQL 923

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
            +Q+RGRVGR   ++   + Y     LS+ +  RL  +K       GF IA  DL+ R  G
Sbjct: 924  YQIRGRVGRSNRLAYAYITYKKDKVLSEVAEKRLQAIKEFTEFGSGFRIAMRDLEIRGAG 983

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
             +LG +Q G  +      E++  LL+ A ++
Sbjct: 984  NLLGSEQHGHLET--VGYEMYCKLLDEAVQE 1012


>gi|222152208|ref|YP_002561383.1| transcription-repair coupling factor [Streptococcus uberis 0140J]
 gi|222113019|emb|CAR40328.1| putative transcription-repair coupling factor [Streptococcus uberis
           0140J]
          Length = 1166

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 153/452 (33%), Positives = 242/452 (53%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  ++ G   + +  + +    + P+  
Sbjct: 555 KLNDGRFQKTKQKVAKQVEDIADDLLKLYA--ERSQQKGFSFSADDDLQKSFDDDFPYVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I +I QDM   + M R+L GDVG GKT VA+ A   AV    Q  I+ P  +L
Sbjct: 613 TEDQIRSIIEIKQDMESNHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAILVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQH+E  K+  +N  I +++++    +  +   LE++  GQ  IIIGTH L    +Q+ 
Sbjct: 673 AQQHFENFKERFENYPIEIDVLSRFRSKKEQGDTLEKLKKGQVDIIIGTHRLLSKDVQFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++        S+ ++ + L E 
Sbjct: 793 NRYPVQTYVLETN-PGLVREAIIREMDRGGQCFYVYNKVD--------SIDKKVSELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + +ENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEDA 993


>gi|306992371|gb|ADN19302.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 166/453 (36%), Positives = 266/453 (58%), Gaps = 8/453 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  KDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           F NG   +L++TTVI VG++V +A+++I+ENAE
Sbjct: 416 FVNGKIDILVSTTVIGVGVNVPNATVMIVENAE 448


>gi|90408104|ref|ZP_01216274.1| transcription-repair coupling factor [Psychromonas sp. CNPT3]
 gi|90310790|gb|EAS38905.1| transcription-repair coupling factor [Psychromonas sp. CNPT3]
          Length = 1158

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 154/558 (27%), Positives = 261/558 (46%), Gaps = 41/558 (7%)

Query: 128 KIKKLKNRI----IMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
           KI + +             +I  N +++     + V  +  G+     + + ++ +    
Sbjct: 460 KITQRRGNTDHHDENYSSEHILRNLEELKIG--QPVVHIDYGIG----RYLGLQNIESAG 513

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE-----------WTSPARERLAYDE 232
            + E++  + L+         A  +I       D E           W    ++      
Sbjct: 514 AITEFVALEYLRGDKLYVPVSALQLISR-YSGHDVENIKLSKLGTETWQKSKQKAAERVR 572

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
            +A ++  +  ++  K  IG    +         +  PF  T  Q +AI  +L DM  + 
Sbjct: 573 DVAAELLDIYAQRAAK--IGFKYTLNKNNYALFKQAFPFEETPDQSNAINAVLNDMCSRQ 630

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M R++ GDVG GKT VA+ A   AV+   Q  I+ P  +LAQQHYE  K    +  + V
Sbjct: 631 PMDRLICGDVGFGKTEVAMRATFLAVDNTRQVAILVPTTLLAQQHYENFKDRFASWPVRV 690

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
           E+++       +++ L  +  G+  I+IGTH L   ++ Y  L L+I+DE+HRFGV+Q+ 
Sbjct: 691 EVLSRFKSAKEQKQILLELQEGKIDILIGTHKLLSSTVVYADLGLLIIDEEHRFGVRQKE 750

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           K+        +L +TATPIPRTL ++  G  D+S I   P+ R  +KT +    + D +I
Sbjct: 751 KIKALRAQIDILTLTATPIPRTLNMSMNGMRDLSIIATPPSKRLAVKTFV--EQKTDALI 808

Query: 473 -ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
            + +   +  G + Y++   +E               +L    ++ +++ HG+M++   E
Sbjct: 809 SDAITREIMRGGQVYFLHNNVETIN-----KAAADIEALVP--SAKVSVAHGQMNEHQLE 861

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            +M  F +    +L+ TT+IE GID+  A+ III  A+H GLAQLHQLRGRVGR    + 
Sbjct: 862 RIMSDFYHQRQNVLVCTTIIETGIDIPSANTIIINRADHLGLAQLHQLRGRVGRSHHQAY 921

Query: 592 CILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
             LL      +SK++  RL  + +      GF +A  DL+ R  GE+LG +QSG    + 
Sbjct: 922 AYLLTPTRKLMSKDAKKRLDAISSLNTLGAGFTLATHDLEIRGAGELLGDEQSGQISSIG 981

Query: 647 AQPELHDSLLEIARKDAK 664
               L+  +L+ A    +
Sbjct: 982 YN--LYMEMLDQAVNALQ 997


>gi|114320951|ref|YP_742634.1| transcription-repair coupling factor [Alkalilimnicola ehrlichii
            MLHE-1]
 gi|114227345|gb|ABI57144.1| transcription-repair coupling factor [Alkalilimnicola ehrlichii
            MLHE-1]
          Length = 1166

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 151/458 (32%), Positives = 232/458 (50%), Gaps = 23/458 (5%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  +  R+  ++          +  Q      PF  T  QESAI  +  DM     M R
Sbjct: 581  ELLDIYARRAAREG--HAYEWRDEDYQAFADAFPFEETPDQESAIAAVEADMRSSRPMDR 638

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VA+ A    ++ G Q  +M P  +LAQQH++  +    +  + VE+++
Sbjct: 639  VVCGDVGFGKTEVAMRAAFMGIQDGRQVAVMVPTTLLAQQHFQNFRDRFSDWPVRVEVLS 698

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                       L  +A G+  I+IGTH L QDS++Y  L LVI+DE+HRFGV+Q+ KL +
Sbjct: 699  RFRSTKDTNAVLRDLADGKVDIVIGTHKLLQDSVKYKDLGLVIIDEEHRFGVRQKEKLKK 758

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ER 474
                  +L +TATPIPRTL ++  G  D+S I   PA R  +KT +   N+ D  I  E 
Sbjct: 759  LRAEVDILTLTATPIPRTLNMSLAGIRDLSIIATPPARRLAVKTFV---NQWDPAIIQEA 815

Query: 475  LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             +  L  G + Y++   ++         +      L     + + + HG+M + D E VM
Sbjct: 816  CQRELKRGGQIYFLHNDLDSID-----RIARELEELVPD--ARVDVAHGQMPERDLERVM 868

Query: 535  DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
              F +    +L+ +T+IE GIDV  A+ I+I  A+  GLAQLHQLRGRVGR    +   L
Sbjct: 869  LDFYHQRFNILVCSTIIESGIDVPTANTILINRADKLGLAQLHQLRGRVGRSHHRAYAYL 928

Query: 595  LYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
            +  P   ++ ++  RL  + N ED   GF +A  DL+ R  GE+LG +QSG    +    
Sbjct: 929  IAPPEKAMTADAKKRLEAISNLEDLGVGFALASHDLEIRGAGELLGEEQSGQISEVGFN- 987

Query: 650  ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
             L+  LL+ A K  +    ++P L     +   + L +
Sbjct: 988  -LYTELLDRAVKALQS--GEEPALDEPMHRGAEVDLRI 1022


>gi|53803839|ref|YP_114301.1| transcription-repair coupling factor [Methylococcus capsulatus str.
           Bath]
 gi|53757600|gb|AAU91891.1| transcription-repair coupling factor [Methylococcus capsulatus str.
           Bath]
          Length = 1147

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 146/464 (31%), Positives = 238/464 (51%), Gaps = 19/464 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
             +W    R+ L     +A ++  +  R+      G       +         PF  T  
Sbjct: 550 SEQWAKARRKALEQVRDVAAELLDIHARRAAA--SGRSFATLTEEYLSFAAQFPFEETPD 607

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           QE+AI+D+++D++    M R++ GDVG GKT VA+ A   A + G Q  ++ P  +LAQQ
Sbjct: 608 QETAIQDVIRDLAAPRPMDRVVCGDVGFGKTEVAMRAAFIAAQNGRQVAVLVPTTLLAQQ 667

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY+       +  + +++++  + +  + + +  I  G+  I+IGTH L Q  I++  L 
Sbjct: 668 HYKNFCDRFADWPMRIDVLSRFVSKKDQAQTIADIGDGKVDIVIGTHRLLQKDIRFKDLG 727

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI+DE+HRFGV  +    +  +    L +TATPIPRTL +   G  +IS I   P  R 
Sbjct: 728 LVIIDEEHRFGVAHKEHFKKLRSEVDFLALTATPIPRTLDMALSGLREISVIATPPPHRH 787

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I+T +   +    V E +   +  G + Y++  +IE +       + ER   L     +
Sbjct: 788 VIRTFVTEWDDT-LVQEAITREIKRGGQVYFVHNKIETQP-----RLAERLEKLVPGIRT 841

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HG+M + + E++M  F +    +L+ TT++E GIDV  A+ I+I+ A+ FGLAQL
Sbjct: 842 RIA--HGQMPERELENIMLDFYHQRFNVLLCTTIVESGIDVPSANTILIDRADTFGLAQL 899

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEG 631
           HQLRGRVGR    +   LL  P   ++ ++  RL  ++       GFL++ +DL+ R  G
Sbjct: 900 HQLRGRVGRSHHRAYAYLLVPPKKAMTADAVKRLEAIEAAGELGAGFLLSSQDLEIRGAG 959

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           E+LG +QSG  + +     L+  LLE A    K    + P+L +
Sbjct: 960 ELLGEEQSGQIQEI--GFTLYTELLEKAVNALKS--GKQPELET 999


>gi|56418583|ref|YP_145901.1| transcription-repair coupling factor [Geobacillus kaustophilus
            HTA426]
 gi|56378425|dbj|BAD74333.1| transcription-repair coupling factor [Geobacillus kaustophilus
            HTA426]
          Length = 1177

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 139/457 (30%), Positives = 233/457 (50%), Gaps = 17/457 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  +  + +A  +  L   ++     G   + + ++ ++     P+  T+ Q 
Sbjct: 572  EWKKVKRKVESSVQDIAEDLIKLYAEREA--SKGYAFSPDTEMQREFEAAFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM     M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQHY
Sbjct: 630  RSIEEIKRDMESDKPMDRLLCGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +++  Q   I V ++     +  + + ++ +  G   ++IGTH L    +++  L L+
Sbjct: 690  ETVRERFQGFPIKVGLLNRFRTKKQQAETIKGLKDGTIDMVIGTHRLLSKDVEFKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVAHKEKIKQLKANIDVLTLTATPIPRTLHMSMIGVRDLSIIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++     + V E ++  L+   + +++   IE+          E    L     + +
Sbjct: 810  QTYVMEY-TPELVKEAIERELARDGQVFFLYNHIEDID-----LKAEEIAQLVPE--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              +HGRMS+ + ES + +F  G   +L+ TT+IE GID+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYVHGRMSETELESTILAFLEGQYDVLVTTTIIETGIDIPNVNTLIVYDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL  R  G I
Sbjct: 922  LRGRVGRSNRVAYAYFTYRKDKVLNEAAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNI 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            LG +Q G    +     L+  +L+ A +  + I  +D
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKEAIEKRRGIKRED 1016


>gi|220932952|ref|YP_002509860.1| transcription-repair coupling factor [Halothermothrix orenii H 168]
 gi|219994262|gb|ACL70865.1| transcription-repair coupling factor [Halothermothrix orenii H 168]
          Length = 1170

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 147/451 (32%), Positives = 228/451 (50%), Gaps = 17/451 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++     + +A  +  L    + +   G   + +    ++     P+  T  Q 
Sbjct: 575  DWKKVKQKVKESVKEMAIGLLELYA--ERETIKGYSFSDDTVWQKEFEEAFPYEETPDQL 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+++  DM     M R+L GDVG GKT VA+ A   AV  G Q  ++ P  ILAQQHY
Sbjct: 633  KAIEEVKNDMESATPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQTAVLVPTTILAQQHY 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  +N  I +E+I+     A +R+ L+++A G+  IIIGTH L    + +  L L+
Sbjct: 693  NTFSERMKNYPINIEMISRFKTPAEQREVLKKLAAGEVDIIIGTHRLLSRDVVFNDLGLL 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+        VL MTATPIPRTL +  +G  D+S I   P  R PI
Sbjct: 753  IIDEEQRFGVSHKEKIKDLKRNVDVLTMTATPIPRTLHMALVGVRDMSVIETPPENRYPI 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T I   N+ + + + ++  L    + Y++  ++E+ +E            L       +
Sbjct: 813  RTYIREFNK-ELIRDAVRKELGREGQVYFVHNRVEDIQEQAT-----MIKKLVPE--CRV 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++   E +M  F N    +L+ TT+IE G+D+ + + II+  A+  GLAQL+Q
Sbjct: 865  AVAHGQMNEHKLERLMLDFYNHQYDVLVCTTIIETGLDIPNVNTIIVNRADQMGLAQLYQ 924

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+   LLY     L + +  RL  +K       GF IA  DL+ R  G +
Sbjct: 925  LRGRVGRSNRIAYAYLLYEKDRVLPEVAEKRLRAIKEFTNLGSGFKIAMRDLEIRGAGNL 984

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            LG +Q G          L+  LLE A ++ K
Sbjct: 985  LGPEQHGHI--ASVGFSLYCKLLEGAVEELK 1013


>gi|146317670|ref|YP_001197382.1| transcription-repair coupling factor [Streptococcus suis 05ZYH33]
 gi|253750931|ref|YP_003024072.1| transcription-repair coupling factor [Streptococcus suis SC84]
 gi|253752830|ref|YP_003025970.1| transcription-repair coupling factor [Streptococcus suis P1/7]
 gi|253754655|ref|YP_003027795.1| transcription-repair coupling factor [Streptococcus suis BM407]
 gi|145688476|gb|ABP88982.1| Transcription-repair coupling factor (superfamily II helicase)
           [Streptococcus suis 05ZYH33]
 gi|251815220|emb|CAZ50784.1| putative transcription-repair coupling factor [Streptococcus suis
           SC84]
 gi|251817119|emb|CAZ54840.1| putative transcription-repair coupling factor [Streptococcus suis
           BM407]
 gi|251819075|emb|CAR44089.1| putative transcription-repair coupling factor [Streptococcus suis
           P1/7]
 gi|292557472|gb|ADE30473.1| Transcription-repair coupling factor [Streptococcus suis GZ1]
          Length = 1164

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 150/474 (31%), Positives = 243/474 (51%), Gaps = 24/474 (5%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           DLL K    S  +A  +     K  D  +    ++     E +A  +  L    +  +  
Sbjct: 539 DLLSKY-LASDGKAPKV----NKLNDGRFQRTKQKVQKQVEDIADDLIKLYA--ERSQLK 591

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   + + +   +         T  Q  +I +I +DM + + M R+L GDVG GKT VA+
Sbjct: 592 GFAFSPDDENQVEFDNYFTHVETDDQLRSIDEIKKDMEKDSPMDRLLVGDVGFGKTEVAM 651

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV  G Q  I+ P  +LAQQHY   ++      + V++++    +A + K LE++
Sbjct: 652 RAAFKAVNDGKQVAILVPTTVLAQQHYANFQERFAEFPVNVDVMSRFKTKAEQEKTLEKL 711

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             GQ  I+IGTH L    + +  L L+++DE+ RFGV+ + +L +      VL +TATPI
Sbjct: 712 KKGQVDILIGTHRLLSKDVVFADLGLLVIDEEQRFGVKHKERLKELKKKIDVLTLTATPI 771

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL ++ LG  D+S I   P  R P++T ++  N    + + +   +  G + Y++  +
Sbjct: 772 PRTLQMSMLGIRDLSVIETPPTNRYPVQTYVMETN-PSVIRDAMLREIDRGGQVYYLYNK 830

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           ++  +        ++ + L E    + I  +HG+MS+I  E+ + +F  G   +L+ TT+
Sbjct: 831 VDTIE--------QKVSELKELVPEATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTI 882

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL 608
           IE G+D+ +A+ + IENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ +  RL
Sbjct: 883 IETGVDIPNANTLFIENADHMGLSTLYQLRGRVGRSSRIAYAYLMYRPDKSLTEVAEKRL 942

Query: 609 SVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             +K       GF IA +DL  R  G ILG  QSG         E++  LLE A
Sbjct: 943 EAIKGFTELGSGFKIAMQDLSIRGAGNILGAAQSGFID--SVGYEMYSQLLEQA 994


>gi|327463840|gb|EGF10156.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK1057]
          Length = 1167

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 145/452 (32%), Positives = 239/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     + +A  +  L    +  +  G   + +    ++   + P+  
Sbjct: 559 KLNDGRFQKSKKKVQHQVQDIADDLIKLYA--ERSQLKGFAFSADDSNQEEFDNDFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I+++ +DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 617 TEDQLRSIQEVKKDMESSRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  + VE+++    +A +++ L+++  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHYTNFKERFNDFAVNVEVLSRFRSKAEQKQTLDKLQKGQVDIIIGTHRLLSKDVEFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIIIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 797 NRYPVQTYVLESNPT-VIREAVLREIDRGGQVYYLYNKVDTIE--------QKVSELREL 847

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +++ + +ENA+H G
Sbjct: 848 IPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNSNTLFVENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGSMQSGFID--SVGFEMYSQLLEEA 997


>gi|255659238|ref|ZP_05404647.1| transcription-repair coupling factor [Mitsuokella multacida DSM
           20544]
 gi|260848692|gb|EEX68699.1| transcription-repair coupling factor [Mitsuokella multacida DSM
           20544]
          Length = 1129

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 142/449 (31%), Positives = 235/449 (52%), Gaps = 18/449 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW           E +A ++  +  ++  K   G     +    ++     P+  T+ Q 
Sbjct: 501 EWVKAKARAKKSVEDIAQKLIEIYAKR--KDAKGHAFPPDDASQREFEDAFPYEETEDQL 558

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI +I  DM ++  M R+L GDVG GKT VA+ A   A   G Q  ++ P  +LAQQHY
Sbjct: 559 RAIAEIKADMEREKPMDRLLCGDVGFGKTEVAIRAAYKAAMDGKQVAVLVPTTVLAQQHY 618

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF-QDSIQYYKLIL 397
           +           ++++I        +++ +E++  GQ  I+IGTHA+  Q+ +++  L L
Sbjct: 619 QTFTTRFNGFAPVIDVICRFRTPKQQKETIEKVRLGQVDILIGTHAILNQNKVKWKDLGL 678

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+ RFGV+Q+ K+ + A    VL ++ATPIPRTL ++ +G  D+S I   PA R P
Sbjct: 679 LIVDEEQRFGVKQKDKIRKLAAGIDVLTLSATPIPRTLHMSLVGARDMSIIETPPAERFP 738

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           ++T ++  N    +   ++  +  G + Y+I  +++         + +   SL     + 
Sbjct: 739 VQTYVVENNDT-IIANAIRREMKRGGQVYFIYNRVDTID-----RMRDHIESLVPE--AR 790

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I   HG+M +   E VM  F  G   +L+AT+++E G+DV +A+ II+ NA+HFGL+QL+
Sbjct: 791 IQTAHGQMPEEMLEHVMMDFYEGDYDILLATSIVENGLDVANANTIIVYNADHFGLSQLY 850

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           Q+RGRVGR   ++    +Y     L++ +  RL  +K   +   GF IA  DL+ R  G 
Sbjct: 851 QMRGRVGRSHHMAFAYFVYQADKILTETAEKRLQAMKEFAELGAGFKIAMRDLEIRGAGN 910

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           +LG +Q G         E++  LLE A +
Sbjct: 911 LLGAQQHGHI--ASVGFEMYCKLLEEAVE 937


>gi|150024302|ref|YP_001295128.1| transcription-repair coupling factor [Flavobacterium psychrophilum
           JIP02/86]
 gi|149770843|emb|CAL42308.1| Transcription-repair coupling factor [Flavobacterium psychrophilum
           JIP02/86]
          Length = 1117

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 134/461 (29%), Positives = 232/461 (50%), Gaps = 18/461 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++  A  + +A  +  L  +++   + G     +  +  ++  +  +  T  Q  
Sbjct: 509 WKALKQKTKARVKHIAFNLIQLYAKRRL--DKGFAFAPDSYLQHELESSFIYEDTPDQLK 566

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           + +++  DM     M R++ GDVG GKT VA+ A   AV+ G Q  I+ P  ILA QHY 
Sbjct: 567 STQEVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAILVPTTILAYQHYR 626

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + +  +        + + L+ +  G+  I+IGTH L   ++ +  L L+I
Sbjct: 627 TFTERLKDMPVTINYLNRFKTAKQKAETLKDLEAGKVDIVIGTHQLVSKNVIFKDLGLLI 686

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL         L +TATPIPRTL  + +   D+S IT  P  R PI+
Sbjct: 687 VDEEQKFGVNVKDKLKTITQNVDTLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIE 746

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T ++  N  + + + +   +  G + ++I  +IE  KE            L     + + 
Sbjct: 747 THVVGFNE-ETIRDAISFEIERGGQVFFINNRIENIKEVAG-----MIQRLVPD--AKVG 798

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E +M +F  G   +L+ATT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 799 IGHGQMDGKKLEELMLAFMEGEFDVLVATTIIESGLDVPNANTIFINNANNFGLSDLHQM 858

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   +++++  R+  L+       G  IA +DL+ R  G++L
Sbjct: 859 RGRVGRSNKKAFCYFICPPYSVMTEDARKRIQALEQFSELGSGLNIAMKDLEIRGAGDLL 918

Query: 635 GIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           G +QSG      F   Q  +++++ E+   + K +   D +
Sbjct: 919 GGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYENDNE 959


>gi|296125668|ref|YP_003632920.1| transcription-repair coupling factor [Brachyspira murdochii DSM
            12563]
 gi|296017484|gb|ADG70721.1| transcription-repair coupling factor [Brachyspira murdochii DSM
            12563]
          Length = 1244

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 141/457 (30%), Positives = 227/457 (49%), Gaps = 21/457 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     +        A ++  L          G     + +       +  +  T  Q  
Sbjct: 595  WDKIKSKAREDALATARELIKLYA--IRSNIHGNVYGADTQWQDDFEASFKYEETADQLR 652

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI DI +DM     M R++ GDVG GKT VA  A+  A+ AG Q  I+ P  IL+QQHY 
Sbjct: 653  AINDIKEDMESGKMMDRLVCGDVGFGKTEVAFRAVFKAIMAGKQCAILCPTTILSQQHYN 712

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              KK  ++  I +E++   +     ++  E + +G   +++GTH L  + I++  L L++
Sbjct: 713  NAKKRFEDFPIRIEVLNRFVTSKQAKRNKELLKNGSCDLVVGTHMLLSNDIEFKNLGLIV 772

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV+ +  L +      VL ++ATPIPRTL +   G  DIS I   P  R P+K
Sbjct: 773  IDEEQRFGVKHKEALKRLRLETDVLTLSATPIPRTLNMALTGIRDISIIETPPLNRIPVK 832

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SS 517
            T +   +  + V+  ++  L    + +++  +I+           E F  + +     + 
Sbjct: 833  TFVTEFSE-EAVVNAIERELKRDGQVFYLYNRIDTI---------ESFALMIKKLCPKAR 882

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I + HGRM+    E +M+ F N    +L++TT+IE GID+ +A+ I+I+NA   GL++L+
Sbjct: 883  ICVAHGRMTGHQLEKIMEDFINHKYDILVSTTIIENGIDIPNANTILIDNANRLGLSELY 942

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR +  +   + Y     L++ +Y RL  +    D   GF IA  DL+ R  G 
Sbjct: 943  QLRGRVGRSDREAYAYMFYPSDLALTEVAYKRLEAISEHTDLGAGFKIAMRDLEIRGAGN 1002

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            ILG +QSGM        EL+  +LE A  + K  + +
Sbjct: 1003 ILGKEQSGMI--YQVGYELYTQMLEEATNEYKGEIKE 1037


>gi|149177449|ref|ZP_01856053.1| transcription-repair coupling factor [Planctomyces maris DSM 8797]
 gi|148843782|gb|EDL58141.1| transcription-repair coupling factor [Planctomyces maris DSM 8797]
          Length = 1112

 Score =  360 bits (923), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 143/453 (31%), Positives = 236/453 (52%), Gaps = 15/453 (3%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           PR +K    +  +++  A + +      +L ++ Q   + GI    +    ++   + P+
Sbjct: 505 PRLSKLGTKSWASKKEKAAEAVRDMASDMLRLQAQRSGQPGISYPPDSHWQKEFEASFPY 564

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
           + T  Q  AI D+  DM +   M R++ GDVG GKT VA+ A   A++AG Q  ++ P  
Sbjct: 565 TETSDQLHAISDVRHDMERAQPMDRLICGDVGYGKTEVAIRAAFKAIDAGKQVAVLVPTT 624

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LA+QH     +   +  I +E ++    +  +R  LE +A G   ++IGTH L Q  I+
Sbjct: 625 VLAEQHTRTFSERMADYPITIEGLSRFKSKKEQRAILEGMAAGSVDLVIGTHRLIQKDIK 684

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+I+DE+ RFGV+ +  L +      VL ++ATP+PRTL ++ LG  DIS +T  
Sbjct: 685 FKDLGLLIIDEEQRFGVEAKEMLKRLRLQIDVLTLSATPVPRTLHMSLLGIRDISNLTTA 744

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R PI+T I   +  + +   +   L+   + Y++  ++      + +   +R   + 
Sbjct: 745 PRDRVPIETRITRFD-PELIRHAMVRELNRNGQVYFVHNRV-----HDLQKYADRIQQIV 798

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               +SI I HG+M + + E+ M +F +G   + + TT+IE G+D+ +A+ I I +A + 
Sbjct: 799 PE--ASIGIGHGQMKETELEAAMLNFVSGKVDIFVCTTIIESGLDIPNANTIFIHDAGNH 856

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLK 626
           GL+ LHQLRGRVGR    + C LL      L+  +  RL  ++   +   GF IA  DL+
Sbjct: 857 GLSDLHQLRGRVGRSHHRAYCYLLLRDGQMLTPIAAKRLKAIEEYSELGAGFKIAMRDLE 916

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G ILG +QSG         EL+  LLE A
Sbjct: 917 IRGAGNILGTEQSGHI--AAVGYELYCQLLENA 947


>gi|148262223|ref|YP_001228929.1| transcription-repair coupling factor [Geobacter uraniireducens Rf4]
 gi|146395723|gb|ABQ24356.1| transcription-repair coupling factor [Geobacter uraniireducens Rf4]
          Length = 1159

 Score =  359 bits (922), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 152/481 (31%), Positives = 251/481 (52%), Gaps = 22/481 (4%)

Query: 222  SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            + AR R A  E+    + +   R+    E G   + + ++ Q+   +  F  T  Q++AI
Sbjct: 574  TKARARAAIQEMAGELLKIYAARQ---VEEGHAFSPQDELYQEFEASFAFEETPDQQAAI 630

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +D+L DM  K  M R++ GDVG GKT VA+     AV  G Q  ++ P  ILAQQH E  
Sbjct: 631  EDVLHDMESKRPMDRLVCGDVGYGKTEVAMRGAFKAVMDGKQVALLVPTTILAQQHMETF 690

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
             +  +   + VE+++       ++  LE +  G+  IIIGTH L Q  + +  L L+I+D
Sbjct: 691  AERFKAYPVKVEMLSRFRSAKEQKAILEGVKKGEVDIIIGTHRLLQKDVVFKDLGLLIID 750

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+ RFGV  + +L Q      ++ +TATPIPRTL ++ +G  D+S I   P  R  IKT 
Sbjct: 751  EEQRFGVSHKERLKQFRAVVDIMTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLAIKTF 810

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            +   +  + + E +   L  G + +++  +++         + E    +     + IA+ 
Sbjct: 811  VARSSD-ELIREAVLRELRRGGQVFFVHNRVQTIGA-----MAEHLQQIVPE--ARIAVG 862

Query: 522  HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            HG+M + + E VM  F +G   LL+ TT+IE G+D+  A+ +I+  A+ FGL+QL+QLRG
Sbjct: 863  HGQMDEKELERVMLGFMHGETNLLLCTTIIESGLDIPTANTLIVSRADTFGLSQLYQLRG 922

Query: 582  RVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636
            RVGR ++ +   LL      +S ++  RL +++   +   GF IA  DL+ R  G++LG 
Sbjct: 923  RVGRSKQRAYAYLLIPGEGAISADARERLKIIQELTELGAGFRIATHDLEIRGAGDLLGA 982

Query: 637  KQSGMPKFLIAQPELHDSLLEIA-RKDAKHILTQ--DPDLTSVRGQSIRILLYLYQYNEA 693
            +QSG         EL+  LLE A R+     L +  +P++  +R  +     Y+ + N+ 
Sbjct: 983  RQSG--DIAAVGFELYTELLEEAIRQLKGEELAERVEPEI-KLRIPAFVPEDYVREPNQR 1039

Query: 694  F 694
             
Sbjct: 1040 L 1040


>gi|331701922|ref|YP_004398881.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL
            B-30929]
 gi|329129265|gb|AEB73818.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL
            B-30929]
          Length = 1178

 Score =  359 bits (922), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 135/446 (30%), Positives = 236/446 (52%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +  +  E +A ++  L  ++  +   G     +  +  +     P+S T  Q 
Sbjct: 568  EWAKTKAKVASKIEDIADELIDLYAKRSAE--KGYAYPQDDSLQAEFEAAFPYSETPDQL 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I +DM  ++ M R+L GDVG GKT VAL A   A+E G Q   + P  ILAQQHY
Sbjct: 626  RSATEIKRDMETQHPMDRLLVGDVGYGKTEVALRAAFKAIEVGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +    +   I V +++        ++ L+ +  G+  +++GTH L    +++  L L+
Sbjct: 686  ETMLDRFREYPITVRVLSRFQTAKQVKETLQGLKDGKVDVVVGTHRLLSKDVKFNDLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + ++ +  +   VL +TATPIPRTL ++ +G  D+S I   P+ R PI
Sbjct: 746  IIDEEQRFGVKHKERIKEMRSDVDVLTLTATPIPRTLNMSMMGVRDLSVIETPPSNRYPI 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T +I  N    + E ++  +S G + +++  ++ + +       VE+ ++L    ++ +
Sbjct: 806  QTYVIEQN-AGTIREAIEREMSRGGQVFYLHNRVSDIE-----KTVEQISALVP--SARV 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              IHG+MS+   E ++  F NG   +L+ TT+IE G+D+ + + + +ENA+  GL+QL+Q
Sbjct: 858  GYIHGQMSENQMEDILYDFINGEYDVLVTTTIIETGVDIPNVNTLFVENADRMGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++    +Y P   L++    RL  +++      GF IA  DL  R  G +
Sbjct: 918  LRGRIGRSSRVAYAYFMYKPNKVLTEIGEKRLEAIRDFTELGSGFKIAMRDLSIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G    +     L+  +L  A
Sbjct: 978  LGKQQHGFVDSVGYD--LYTQMLSDA 1001


>gi|319757180|gb|ADV69122.1| transcription-repair coupling factor [Streptococcus suis JS14]
          Length = 1164

 Score =  359 bits (922), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 150/474 (31%), Positives = 243/474 (51%), Gaps = 24/474 (5%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           DLL K    S  +A  +     K  D  +    ++     E +A  +  L    +  +  
Sbjct: 539 DLLSKY-LASDGKAPKV----NKLNDGRFQRTKQKVQKQVEDIADDLIKLYA--ERSQLK 591

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   + + +   +         T  Q  +I +I +DM + + M R+L GDVG GKT VA+
Sbjct: 592 GFAFSPDDENQVEFDNYFTHVETDDQLRSIDEIKKDMEKDSPMDRLLVGDVGFGKTEVAM 651

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV  G Q  I+ P  +LAQQHY   ++      + V++++    +A + K LE++
Sbjct: 652 RAAFKAVNDGKQVAILVPTTVLAQQHYANFQERFAEFPVNVDVMSRFKTKAEQEKTLEKL 711

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             GQ  I+IGTH L    + +  L L+++DE+ RFGV+ + +L +      VL +TATPI
Sbjct: 712 KKGQVDILIGTHRLLSKDVVFADLGLLVIDEEQRFGVKHKERLKELKKKIDVLTLTATPI 771

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL ++ LG  D+S I   P  R P++T ++  N    + + +   +  G + Y++  +
Sbjct: 772 PRTLQMSMLGIRDLSVIETPPTNRYPVQTYVMETN-PSVIRDAMLREIDRGGQVYYLYNK 830

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           ++  +        ++ + L E    + I  +HG+MS+I  E+ + +F  G   +L+ TT+
Sbjct: 831 VDTIE--------QKVSELKELVPEATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTI 882

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL 608
           IE G+D+ +A+ + IENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ +  RL
Sbjct: 883 IETGVDIPNANTLFIENADHMGLSTLYQLRGRVGRSSRIAYAYLMYRPDKSLTEVAEKRL 942

Query: 609 SVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             +K       GF IA +DL  R  G ILG  QSG         E++  LLE A
Sbjct: 943 EAIKGFTELGSGFKIAMQDLSIRGAGNILGAAQSGFID--SVGYEMYSQLLEQA 994


>gi|332291666|ref|YP_004430275.1| transcription-repair coupling factor [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169752|gb|AEE19007.1| transcription-repair coupling factor [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 1137

 Score =  359 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 134/466 (28%), Positives = 234/466 (50%), Gaps = 18/466 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +  +  + +A  +  L  +++ +   G     +  +  ++  +  +  T  Q S
Sbjct: 509 WKKLKAKTKSRVKHVAFNLIKLYAKRRLQ--KGYAFGPDTHMQHELEASFIYEDTPDQSS 566

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D+ +DM  +  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  ILA QH  
Sbjct: 567 ATEDVKRDMESERPMDRLVCGDVGFGKTEVAIRAAFKAVDGGKQVAVLVPTTILAYQHAR 626

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  ++  + ++ +        +R+ L  +  G   I+IGTH L   ++ +  L L++
Sbjct: 627 TFKERLKDFPVKIDYLNRFRTAKEKREVLAGLESGAIDIVIGTHQLTSKNVNFKDLGLLV 686

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL   +     L +TATPIPRTL  + +   D+S I   P  R PI+
Sbjct: 687 IDEEQKFGVAVKDKLKTISETVDTLTLTATPIPRTLQFSLMAARDLSTINTAPPNRYPIE 746

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + ++  +  + + + ++  +  G + ++I  +IE  KE            L     + + 
Sbjct: 747 SNVVRFSE-EVIRDAVQYEIQRGGQVFFIHNRIENIKEVAG-----LIQRLVPD--AKVG 798

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E+ M SF NG   +L++TT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 799 IGHGQMEGKTLEAKMLSFMNGEFDVLVSTTIIESGLDVPNANTIFINNANNFGLSDLHQM 858

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   ++ ++  R+  L+       GF IA +DL+ R  G++L
Sbjct: 859 RGRVGRSNKKAFCYFITPPYSAMTDDARKRIQALEQFSVLGSGFNIAMKDLEIRGAGDLL 918

Query: 635 GIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           G +QSG      F   Q  L++++ E+   +   +   DP      
Sbjct: 919 GGEQSGFINEIGFDTYQKILNEAIDELKEDEFSELYNDDPAFAKAE 964


>gi|238022627|ref|ZP_04603053.1| hypothetical protein GCWU000324_02536 [Kingella oralis ATCC 51147]
 gi|237865830|gb|EEP66966.1| hypothetical protein GCWU000324_02536 [Kingella oralis ATCC 51147]
          Length = 1156

 Score =  359 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 153/477 (32%), Positives = 242/477 (50%), Gaps = 17/477 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W+   R+        A ++  L  R+  ++        + +  +       + 
Sbjct: 555  HKLGSAAWSKAKRKAAEKARDTAAELLNLYARRAAQEG--YKFQFDEEGYRAFADGFGYE 612

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T+ Q +AI  ++ D++Q   M R++ GDVG GKT VAL A   AV  G Q  ++AP  +
Sbjct: 613  ETEDQAAAIAAVIADLTQARPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTL 672

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            L +QH +       +  + V  ++        R AL  +A G   I+IGTH L QD I +
Sbjct: 673  LVEQHAQNFADRFADFPVKVAQLSRFNSSKETRAALAGMADGTVDIVIGTHKLVQDDISF 732

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L LVI+DE+HRFGV+Q+ +L +      +L +TATPIPRTL +   G  D S IT  P
Sbjct: 733  KNLGLVIIDEEHRFGVRQKEQLKKLRANVDILTLTATPIPRTLSMALEGLRDFSLITTAP 792

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            + R  +KT + P +    V E +   L  G + +++  +++  +     ++ ER  +L  
Sbjct: 793  SRRLAVKTFVKPFSE-GSVREAVLRELKRGGQVFFLHNEVDTIE-----NMRERLETLLP 846

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I + HG++ + + E VM  F      +L+ +T+IE GID+ +A+ III  A+ FG
Sbjct: 847  E--ARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFG 904

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRK 629
            +AQLHQLRGRVGR    +   LL    +SK++  RL  +        GF +A +DL+ R 
Sbjct: 905  IAQLHQLRGRVGRSHHQAYAYLLTPEYISKDAEKRLDAIAAADELGAGFSLAMQDLEIRG 964

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             GEILG  QSG  + +     L+  +L+ A +D K    + PDL +  G +  I L+
Sbjct: 965  AGEILGEGQSG--EMVQVGFTLYTEMLKQAVRDLKK--GRQPDLDAPLGVTTEIKLH 1017


>gi|311028986|ref|ZP_07707076.1| transcription-repair coupling factor [Bacillus sp. m3-13]
 gi|311032274|ref|ZP_07710364.1| transcription-repair coupling factor [Bacillus sp. m3-13]
          Length = 1178

 Score =  359 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 143/471 (30%), Positives = 249/471 (52%), Gaps = 25/471 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +  +  + +A  +  L   ++    +G   + +G++ ++     P+  T+ Q 
Sbjct: 572  DWKKVKNKVESSVQDIADDLIKLYAEREA--SVGHAFSPDGEMQREFEATFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   A+  G Q  I+ P  ILAQQHY
Sbjct: 630  RSIHEIKLDMEKTRPMDRLLCGDVGYGKTEVAIRAAFKAITDGKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ + +G   I++GTH L    I+Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRSRKQQTETMKGLGNGTVDIVVGTHRLLSKDIKYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + V E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVMEYNG-NLVKEAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPE--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM  F  G  ++L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMTENELESVMIQFLEGEAEVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA---RKDAK-----HILTQDPDLTSV 676
            LG +Q G    +     ++  +L+ A   R+ AK     H ++ D +L + 
Sbjct: 982  LGAQQHGFIDSVGFD--MYSQMLKEAIEQRQGAKNAKKAHEISIDVELDAY 1030


>gi|331005187|ref|ZP_08328584.1| Transcription-repair coupling factor [gamma proteobacterium IMCC1989]
 gi|330421011|gb|EGG95280.1| Transcription-repair coupling factor [gamma proteobacterium IMCC1989]
          Length = 1163

 Score =  359 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 138/459 (30%), Positives = 229/459 (49%), Gaps = 19/459 (4%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W     + +     +A ++  +  R+  +  +G          Q+   + PF 
Sbjct: 561  HKLGSDHWRKAKEKAVKEVRDVAAELLDIYARRDAR--VGFAFPYNKMDYQQFSSSFPFE 618

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE+AI  +  DM     M R++ GDVG GKT VA+ A   A +AG Q  ++ P  +
Sbjct: 619  ETPDQEAAIHSVRNDMLSDKPMDRLVCGDVGFGKTEVAMRAAFIATQAGKQVAVLVPTTL 678

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+E       +  + V +I+        +    +++ G+  I+IGTH +     Q+
Sbjct: 679  LAQQHHENFVDRFVDWPVNVAVISRFQTAKETKAIEAKVSSGEIDILIGTHKILTTGFQF 738

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +L L+I+DE+HRFGV+Q+  +    +   +L +TATPIPRTL +      D+S I   P
Sbjct: 739  KELGLLIIDEEHRFGVRQKEAIKAFRSEVDILTLTATPIPRTLNMAMHSIRDLSIIATPP 798

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  +KT +  ++    + E +   +  G + Y++  +++  +        +    L E
Sbjct: 799  ARRLSVKTFVRAVDD-ALIKEAVLREILRGGQVYFLHNEVKTIE--------KTARYLSE 849

Query: 513  HFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                + +   HG++ + + E VM  F +    +L+ +T+IE GID+ +A+ IIIE A+ F
Sbjct: 850  LIPEARVGTAHGQLREKELEHVMSEFYHQRYNVLVCSTIIETGIDIPNANTIIIERADKF 909

Query: 572  GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GLAQLHQLRGRVGR    +   L+  PP  ++ ++  RL  +   +D   GF +A  DL+
Sbjct: 910  GLAQLHQLRGRVGRSHHQAYAYLMTPPPKVMTADAEKRLEAIAQADDLGAGFTLATHDLE 969

Query: 627  QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             R  GE+LG  QSG  + +     L+  +LE   +  K 
Sbjct: 970  IRGAGELLGDDQSGQMQSI--GFTLYMEMLEETVRKIKE 1006


>gi|303234885|ref|ZP_07321510.1| transcription-repair coupling factor [Finegoldia magna BVS033A4]
 gi|302494003|gb|EFL53784.1| transcription-repair coupling factor [Finegoldia magna BVS033A4]
          Length = 1168

 Score =  359 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 143/439 (32%), Positives = 233/439 (53%), Gaps = 18/439 (4%)

Query: 231  DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            DE+    + L   R + K       + + +  ++   + P+  T SQ  +I++I  DM  
Sbjct: 588  DEMADDLVELYSKRAKLKG---YQFSQDTEWQREFEDSFPYEETDSQVRSIEEIKADMES 644

Query: 291  KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
               M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQH+  IK+  ++  I
Sbjct: 645  DRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVAFLVPTTILAQQHFNTIKERFRDYPI 704

Query: 351  IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             VE+++  +  A +++ ++ +  G   +++GTH +   ++++  L L+++DE+ RFGV+ 
Sbjct: 705  RVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGVRH 764

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            + KL        VL ++ATPIPRTL +   G  D+S + E P  R PI T +   N    
Sbjct: 765  KEKLKSMRENVDVLTLSATPIPRTLQMGLTGIRDMSLLEEPPEDRTPISTYVTEYN-PSL 823

Query: 471  VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            + + +   L  G + Y++  +IE+  +  F+        L      +IAI HGRM++ + 
Sbjct: 824  IRDAIIRELDRGGQIYFVYNRIEDIDQMEFK-----LKELVPEL--NIAIAHGRMNEKEL 876

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E+VM  F++G   LL+ TT+IE G+D+ + + +II NA+  GL+QL+QL+GR+GR +  S
Sbjct: 877  ENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKMGLSQLYQLKGRIGRSDRTS 936

Query: 591  SCILLY--HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
                 Y     L++ S  RL  +K       GF IA  DL+ R  G +LG  Q G    +
Sbjct: 937  FAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRDLELRGAGNLLGESQHGHIAKI 996

Query: 646  IAQPELHDSLLEIARKDAK 664
                 L+  LLE A ++AK
Sbjct: 997  GYD--LYVKLLEQAVREAK 1013


>gi|296136148|ref|YP_003643390.1| transcription-repair coupling factor [Thiomonas intermedia K12]
 gi|295796270|gb|ADG31060.1| transcription-repair coupling factor [Thiomonas intermedia K12]
          Length = 1160

 Score =  359 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 151/480 (31%), Positives = 235/480 (48%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +W    R+        A ++  +  R+      G       +  +    +  F 
Sbjct: 552  HTLGSGQWDKARRKAAEQVRDAAAELLNIYARRAA--HQGHAFRYSPQDYEAFAASFGFE 609

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   AV  G Q  ++AP  +
Sbjct: 610  ETPDQAAAIHAVVQDMISPKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTL 669

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QH E  +    +  + +  ++          AL+ +A G   I+IGTH L   ++++
Sbjct: 670  LAEQHCETFRNRFADWPVRIAEMSRFRSTKEISAALDGLARGTVDIVIGTHKLLSPTVKF 729

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +L LVIVDE+HRFGV+ +  L     +  +L +TATPIPRTL +   G  D+S I   P
Sbjct: 730  DRLGLVIVDEEHRFGVRHKEALKAMRASVDLLTLTATPIPRTLGMALEGLRDLSVIATAP 789

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  IKT +   +    + E +   +  G + Y++  ++E  +     +   +   L  
Sbjct: 790  QKRLAIKTFVRSESG-AVMREAILREIKRGGQVYFLHNEVETIE-----NRRRQLEELVP 843

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I I HG+M + D E VM  F      +L+ TT+IE GIDV  A+ I++  A+ FG
Sbjct: 844  E--ARIEIAHGQMHERDLERVMRDFHAQRFNILLCTTIIETGIDVPSANTIVMARADKFG 901

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV---LKNTEDGFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL      L+K +  RL     ++    GF +A  DL+ 
Sbjct: 902  LAQLHQLRGRVGRSHHQAYAYLLVPDVQSLTKQASQRLEAIQQMEELGSGFYLAMHDLEI 961

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG  + +  Q  L++ +L  A K  +    ++PDL +  G +  I L++
Sbjct: 962  RGAGEVLGEQQSGNMQEIGFQ--LYNDMLSEAVKALRA--GREPDLLNPLGVTTEINLHV 1017


>gi|282915821|ref|ZP_06323589.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus D139]
 gi|282320312|gb|EFB50654.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus D139]
          Length = 1168

 Score =  359 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 151/464 (32%), Positives = 236/464 (50%), Gaps = 17/464 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            LG +Q G    +     L+  +LE A  + + I   + D+  V 
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGIKEPESDVPEVE 1018


>gi|312623038|ref|YP_004024651.1| transcription-repair coupling factor [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203505|gb|ADQ46832.1| transcription-repair coupling factor [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 1141

 Score =  359 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 136/440 (30%), Positives = 232/440 (52%), Gaps = 18/440 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++     EL+A  +  L  ++Q     G   + +    ++     P++ T+ Q 
Sbjct: 554 EWQKQKQKVRKSLELVAKDLVELYAKRQL--GKGFKFSKDTLWQKEFEEKFPYTETEGQL 611

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I +DM  +  M RIL GDVG GKT VA+ A   AV    Q  ++ P  ILAQQHY
Sbjct: 612 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 671

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                  ++  + +E+++    +  ++K ++ +  G   I+IGTH L    +++  L L+
Sbjct: 672 MTFSARMKDFPVTIEVLSRLKNETQQKKIIKGLKEGTIDIVIGTHRLLSSDVKFKDLGLL 731

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+H+FGV+ + K+ +  T   VL +TATPIPRTL +  LG  D+S I + P  R P+
Sbjct: 732 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRFPV 791

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  N    + E +   +S G + +++  ++++ +        E    L +    S+
Sbjct: 792 QTFVLEYNER-IIKEAILKEISRGGQVFYLYNRVKDIQ--------EVAAKLQKLVGDSV 842

Query: 519 --AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             A  HG+MS+ + E V+  F  G   +L+ TT+IE G+D+ + + +I+E+++  GLAQL
Sbjct: 843 KIACAHGKMSEEELEEVLIDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLAQL 902

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QLRGRVGR   ++     +     LS+ +  RL+ +K   +   GF IA  DL+ R  G
Sbjct: 903 YQLRGRVGRSSRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGAGFKIAMRDLEIRGAG 962

Query: 632 EILGIKQSGMPKFLIAQPEL 651
            +LG  Q G    +     +
Sbjct: 963 SLLGKLQHGHINSVGYDMYI 982


>gi|222528653|ref|YP_002572535.1| transcription-repair coupling factor [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455500|gb|ACM59762.1| transcription-repair coupling factor [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 1141

 Score =  359 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 135/440 (30%), Positives = 229/440 (52%), Gaps = 18/440 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++     E++A  +  L  ++Q     G   + +    ++     P++ T+ Q 
Sbjct: 554 EWQKQKQKVRKSLEIVAKDLVELYAKRQL--GKGFKFSKDTLWQKEFEEKFPYTETEGQL 611

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I +DM  +  M RIL GDVG GKT VA+ A   AV    Q  ++ P  ILAQQHY
Sbjct: 612 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 671

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                  ++  + +E+++    +  ++K +  +  G   I+IGTH L    +++  L L+
Sbjct: 672 MTFSARMKDFPVTIEVLSRLKSETQQKKIVRGLREGTIDIVIGTHRLLSSDVKFKDLGLL 731

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+H+FGV+ + K+ +  T   VL +TATPIPRTL +  LG  D+S I + P  R P+
Sbjct: 732 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRFPV 791

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS- 517
           +T ++  N    + E +   +S G + +++  +I++ +        E    L      S 
Sbjct: 792 QTFVLEYNER-IIKEAILREISRGGQVFYLYNRIKDIQ--------EVAAKLQNLVDDSI 842

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +A  HG+M + + E V+  F  G   +L+ TT+IE G+D+ + + +I+E+++  GLAQL
Sbjct: 843 KVACAHGQMPEEELERVLLDFIEGRYNVLVCTTIIESGVDMPNVNTLIVEDSDRLGLAQL 902

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QLRGRVGR   ++     +     LS+ +  RL+ +K   +   GF IA  DL+ R  G
Sbjct: 903 YQLRGRVGRSSRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGAGFKIAMRDLEIRGAG 962

Query: 632 EILGIKQSGMPKFLIAQPEL 651
            +LG  Q G    +     +
Sbjct: 963 SLLGKLQHGHINSVGYDMYI 982


>gi|194018017|ref|ZP_03056624.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061]
 gi|194010354|gb|EDW19929.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061]
          Length = 1177

 Score =  359 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 234/449 (52%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++  +  + +A  +  L   ++     G   + + ++  +     P+  T  Q 
Sbjct: 572  DWKRVKKKVESSVQDIADDLIKLYAEREA--SKGYAFSPDHEMQHQFESAFPYQETDDQI 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I QDM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  ILAQQH+
Sbjct: 630  RSIHEIKQDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVPTTILAQQHF 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + I    Q+  + +  ++    +    + L+ + +G   ++IGTH L    I Y  L L+
Sbjct: 690  DTIMDRFQDYPVKIAQLSRFRTRKETTETLKGLKNGTIDMVIGTHRLLSKDIVYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQMKANIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYNG-ALVREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--AKV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            +  HG+MS+ + ESVM +F  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  SYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDIPNVNTLIVHDADKMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +Q G    +     L+  +L+ A ++
Sbjct: 982  LGAQQHGFIDSVGFD--LYSQMLKEAIEE 1008


>gi|302380838|ref|ZP_07269301.1| transcription-repair coupling factor [Finegoldia magna
            ACS-171-V-Col3]
 gi|302311333|gb|EFK93351.1| transcription-repair coupling factor [Finegoldia magna
            ACS-171-V-Col3]
          Length = 1168

 Score =  359 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 143/439 (32%), Positives = 233/439 (53%), Gaps = 18/439 (4%)

Query: 231  DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            DE+    + L   R + K       + + +  ++   + P+  T SQ  +I++I  DM  
Sbjct: 588  DEMADDLVELYSKRAKLKG---YQFSQDTEWQREFEDSFPYEETDSQVRSIEEIKSDMES 644

Query: 291  KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
               M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQH+  IK+  ++  I
Sbjct: 645  DRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVAFLVPTTILAQQHFNTIKERFRDYPI 704

Query: 351  IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             VE+++  +  A +++ ++ +  G   +++GTH +   ++++  L L+++DE+ RFGV+ 
Sbjct: 705  RVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGVRH 764

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            + KL        VL ++ATPIPRTL +   G  D+S + E P  R PI T +   N    
Sbjct: 765  KEKLKSMRENVDVLTLSATPIPRTLQMGLTGIRDMSLLEEPPEDRTPISTYVTEYN-PSL 823

Query: 471  VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            + + +   L  G + Y++  +IE+  +  F+        L      +IAI HGRM++ + 
Sbjct: 824  IRDAIIRELDRGGQIYFVYNRIEDIDQMEFK-----LKELVPEL--NIAIAHGRMNEKEL 876

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E+VM  F++G   LL+ TT+IE G+D+ + + +II NA+  GL+QL+QL+GR+GR +  S
Sbjct: 877  ENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKMGLSQLYQLKGRIGRSDRTS 936

Query: 591  SCILLY--HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
                 Y     L++ S  RL  +K       GF IA  DL+ R  G +LG  Q G    +
Sbjct: 937  FAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRDLELRGAGNLLGESQHGHIAKI 996

Query: 646  IAQPELHDSLLEIARKDAK 664
                 L+  LLE A ++AK
Sbjct: 997  GYD--LYVKLLEQAVREAK 1013


>gi|283768938|ref|ZP_06341847.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
            aureus H19]
 gi|283461119|gb|EFC08205.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
            aureus H19]
          Length = 1168

 Score =  359 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 151/464 (32%), Positives = 236/464 (50%), Gaps = 17/464 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            LG +Q G    +     L+  +LE A  + + I   + D+  V 
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGIKEPESDVPEVE 1018


>gi|92113691|ref|YP_573619.1| transcription-repair coupling factor [Chromohalobacter salexigens DSM
            3043]
 gi|91796781|gb|ABE58920.1| transcription-repair coupling factor [Chromohalobacter salexigens DSM
            3043]
          Length = 1150

 Score =  359 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 157/500 (31%), Positives = 250/500 (50%), Gaps = 20/500 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            +      S          P  K     W    R+        A ++     R++ ++   
Sbjct: 524  VDSLHLISRYAGATDELAPLHKLGSETWDKAKRKAAEKIRDTAAELLDTYARREAREG-- 581

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
                   +   +   + PF  T  Q +AI+ ++ DM+    M R++ GDVG GKT VA+ 
Sbjct: 582  FACAPPDEDYARFAASFPFEETPDQHAAIEAVIGDMTAARPMDRVVCGDVGFGKTEVAMR 641

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A   AVE+G Q V++ P  +LAQQHY+  +    +T + +E+I+       ++ +LERI 
Sbjct: 642  AAFLAVESGRQVVVLVPTTLLAQQHYDNFRDRFADTAVQIELISRFTAGKGQQASLERIT 701

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G+A I+IGTH L   S+    + L+I+DE+HRFGV Q+ KL        +L +TATPIP
Sbjct: 702  EGRADIVIGTHKLLSKSMSLPNMGLLIIDEEHRFGVSQKEKLKGLRAEIDILTLTATPIP 761

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   PA R  +KT +   N    + E L   +  G + Y++  ++
Sbjct: 762  RTLNMAMSGIRDLSIIATPPARRLSVKTFVQQRNE-GVLKEALLREILRGGQVYFLHNEV 820

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            +            +   L     + + I HG++ + + E VM  F +    +L+ +T+IE
Sbjct: 821  KTIDA-----TAAKITELVPD--ARVGIAHGQLPERELERVMSDFYHKRFNVLVCSTIIE 873

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV 610
             GIDV  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL  PP  +++++  RL  
Sbjct: 874  TGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAMTRDALKRLEA 933

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            +   ED   GF +A  D++ R  GE+LG +QSG  + +     L+  +L+ A K  K   
Sbjct: 934  IGQAEDLGAGFTLASHDMEIRGAGELLGDEQSGQMETIGYS--LYMQMLDRAVKAIKS-- 989

Query: 668  TQDPDLTSVRGQSIRILLYL 687
             + P++ +   + + + L L
Sbjct: 990  GRTPNIEAPLDEGVEVSLNL 1009


>gi|212637897|ref|YP_002314417.1| transcription-repair coupling factor (helicase, mfd) [Anoxybacillus
            flavithermus WK1]
 gi|212559377|gb|ACJ32432.1| Transcription-repair coupling factor (helicase, mfd) [Anoxybacillus
            flavithermus WK1]
          Length = 1189

 Score =  359 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 135/436 (30%), Positives = 233/436 (53%), Gaps = 15/436 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            + +  + +   G   + + ++ ++     P+  T+ Q  +I++I +DM  +  M R+L G
Sbjct: 611  MKLYAEREASKGYAFSPDNEMQREFEAAFPYQETEDQLRSIREIKRDMESERPMDRLLCG 670

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   A+  G Q   + P  ILAQQHYE +++  Q   I V +++    
Sbjct: 671  DVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGYPIHVSLLSRFRT 730

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            +  + + ++ +  G   ++IGTH L    + +  L L+I+DE+ RFGV  + K+ Q  T 
Sbjct: 731  KKQQTETIQGLKDGTIDMVIGTHRLLSKDVSFKDLGLLIIDEEQRFGVAHKEKIKQLKTN 790

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL +TATPIPRTL ++ +G  D+S I   P  R P++T ++  + I  V E ++  ++
Sbjct: 791  IDVLTLTATPIPRTLHMSLIGVRDLSVIETPPENRFPVQTYVMEYSPI-IVREAIEREMA 849

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++  ++E+          E  ++L     + +   HGRMS+ + E+VM +F  G
Sbjct: 850  RGGQVFFLYNRVEDID-----RKAEEISALVPD--ARVTYAHGRMSEHELEAVMLAFLEG 902

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
               +L++TT+IE G+D+ + + +I+ +A+  GL+QL+QLRGRVGR   I+     Y    
Sbjct: 903  QYDVLVSTTIIETGVDIPNVNTLIVYDADKMGLSQLYQLRGRVGRSNRIAYAYFTYRKDK 962

Query: 600  -LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             L++ +  RL  +K       GF IA  DL  R  G +LG +Q G         EL+  +
Sbjct: 963  VLNEIAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAQQHGFID--SVGFELYSQM 1020

Query: 656  LEIARKDAKHILTQDP 671
            L+ A ++ +    + P
Sbjct: 1021 LKEAIEEKRGTKQEKP 1036


>gi|325479334|gb|EGC82430.1| transcription-repair coupling factor [Anaerococcus prevotii
            ACS-065-V-Col13]
          Length = 1167

 Score =  359 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 142/452 (31%), Positives = 234/452 (51%), Gaps = 26/452 (5%)

Query: 231  DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            DE+    + L   R + K       + +         + PF  T SQ  +I +I  DM  
Sbjct: 585  DEIADDLVKLYAKRSKIKGH---AFSKDTAWQNDFENSFPFEETYSQIRSINEIKSDMES 641

Query: 291  KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
               M R+L GDVG GKT VA+ A   A+  G Q   + P  ILA QHYE I+K      +
Sbjct: 642  DKPMDRLLCGDVGYGKTEVAIRAAFKAIMDGYQVAFLVPTTILANQHYETIRKRFAKFPV 701

Query: 351  IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             V++++    +      ++ +  G+  ++IGTH L    + Y KL L+I+DE+ RFGV+ 
Sbjct: 702  NVQMLSRFNSKNKNDLIIKDLKAGKIDLVIGTHRLLSKDVSYRKLGLLIIDEEQRFGVKH 761

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--I 468
            + +L +  ++  VL ++ATPIPRTL ++  G  D+S + E P  R P+ T +I  +   I
Sbjct: 762  KEQLKEFKSSLDVLTLSATPIPRTLQMSLSGIRDLSTLDEPPEERMPVNTYVIEYDNSII 821

Query: 469  DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSD 527
             + IE     +S G + Y++  ++ + +        + +N + +    S +AIIHG++S 
Sbjct: 822  KQAIE---REISRGGQVYFVYNRVNDIE--------KLYNHIKDLVPESTVAIIHGKVSP 870

Query: 528  IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
               E  M  F +G   +L++TT+IE G+D+ + + +II +++  GL+QL+QL+GR+GRG 
Sbjct: 871  KQIEKTMFEFIDGEIDVLLSTTIIETGMDISNVNTMIIYDSDMMGLSQLYQLKGRIGRGN 930

Query: 588  EISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMP 642
              S     Y     L+  S  RL  +++  D   G+ IA +DL+ R  G +LG  QSG  
Sbjct: 931  RSSYAYFTYRTGKILTDISEKRLKSIRDFSDFGSGYKIAMKDLELRGAGNLLGESQSGHV 990

Query: 643  KFLIAQPELHDSLLEIARKDA--KHILTQDPD 672
            + +     L+   L+ A + A  K I  +D +
Sbjct: 991  EAIGYD--LYVKFLQEAVEKASGKEITIRDKE 1020


>gi|225867624|ref|YP_002743572.1| transcription-repair coupling factor [Streptococcus equi subsp.
           zooepidemicus]
 gi|225700900|emb|CAW97563.1| putative transcription-repair coupling factor [Streptococcus equi
           subsp. zooepidemicus]
          Length = 1164

 Score =  359 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 236/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    +      E +A  +  L    +  ++ G   + + ++ +    +  F  
Sbjct: 555 KLNDGRFQKTKQRVKKQVEDIADDLLKLYA--ERSQQKGFQFSPDDELQKAFEEDFAFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +IK++ +DM     M R+L GDVG GKT VA+ A   A+    Q  I+ P  +L
Sbjct: 613 TDDQVRSIKEVKKDMESIKPMDRLLVGDVGFGKTEVAMRAAFKAIGDHKQVAILVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  ++  +N  + + +++    +  + ++LER+  GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYENFRERFENYPVEIAVLSRFRSKKEQSESLERLKKGQVDIIIGTHRLLSKDVIFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + +++  +++           ++   L E 
Sbjct: 793 NRYPVQTYVLE-NNPGLIREAIIREMDRGGQVFYVYNKVDTID--------KKVAELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MSDI  E+ +  F NG   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 844 VPEASIGFVHGQMSDIQLENTLMDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYKPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG    +     ++  LLE A
Sbjct: 964 RGAGNILGASQSGFIDSVGFD--MYSQLLEQA 993


>gi|89100521|ref|ZP_01173382.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911]
 gi|89084787|gb|EAR63927.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911]
          Length = 1179

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 138/452 (30%), Positives = 240/452 (53%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++  +  + +A  +  L   ++     G   + +G + ++   + P+  T+ Q 
Sbjct: 573  DWKRVKKKVESSVQDIADDLIKLYAEREA--SKGYAFSPDGDMQREFELSFPYQETEDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM ++  M R+L GDVG GKT VA+ A   A+  G Q  I+ P  ILAQQHY
Sbjct: 631  RSIHEIKLDMEKERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVAILVPTTILAQQHY 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +++  Q   + + +++    +  + + ++ + +G   I++GTH L    I Y  L L+
Sbjct: 691  QTMRERFQEYPVEIGLLSRFRTKKQQTETVKGLKNGTVDIVVGTHRLLSKEIIYKDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 751  IIDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  ++ G + Y++  ++E+ +        E  + L     + +
Sbjct: 811  QTYVMEYNG-GLVREAIEREMARGGQVYFLYNRVEDIE-----RKAEEISMLVPD--AKV 862

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 863  VAAHGQMTENELESVMLSFLGGEADVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 922

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 923  LRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 982

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +Q G    +     L+  +L+ A ++ K 
Sbjct: 983  LGSQQHGFIDSVGFD--LYSQMLKEAIEERKE 1012


>gi|114330160|ref|YP_746382.1| transcription-repair coupling factor [Nitrosomonas eutropha C91]
 gi|114307174|gb|ABI58417.1| transcription-repair coupling factor [Nitrosomonas eutropha C91]
          Length = 1154

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 155/502 (30%), Positives = 233/502 (46%), Gaps = 24/502 (4%)

Query: 196  KKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            +    S          P  K    +W    R+ +      A ++  L  ++  +K     
Sbjct: 532  QLHLISRYSGAAPEEAPLHKLGSGQWEKAKRKAMQQVRDTAAELLNLYAQRAARKGHTFR 591

Query: 255  INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +N              F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A 
Sbjct: 592  LN--QHDYNVFADGFGFEETPDQAAAIHAVIQDMVSGKPMDRLICGDVGFGKTEVALRAA 649

Query: 315  AAAVEAGGQAVIMAPIGILAQQHYEFIKKYT----QNTQIIVEIITGNMPQAHRRKALER 370
              A+  G Q  I+ P  +LA+QHY+              + +  ++       + +AL+ 
Sbjct: 650  FIAIADGRQVAILVPTTLLAEQHYQSFSDRFGLIADQWPVKIAELSRFRSTKEQSEALQS 709

Query: 371  IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
            +A G   IIIGTH L QD +++  L LVI+DE+HRFGV+Q+ +L +      VL +TATP
Sbjct: 710  LAQGTTDIIIGTHKLIQDKVKFKNLGLVIIDEEHRFGVRQKEQLKKLRAEVDVLTLTATP 769

Query: 431  IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
            IPRTL ++  G  D S I   P  R  I+T + P      + E     L  G + Y++  
Sbjct: 770  IPRTLAMSLEGLRDFSVIATAPQRRLAIRTFVHPYTE-GIIREACLRELKRGGQIYFLYN 828

Query: 491  QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            ++   +    +        +     + I I HG+M + + E VM  F      +L+ TT+
Sbjct: 829  EVSTIQNMYTKL-------IKLLPEAKINIAHGQMRESELEHVMRDFYQQRFNMLLCTTI 881

Query: 551  IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNS---Y 605
            IE GIDV  A+ III  A+ FGLAQLHQLRGRVGR    +   LL      L+  +    
Sbjct: 882  IETGIDVPTANTIIIHRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEKAALTIQAIRRL 941

Query: 606  TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
              +  ++    GF +A  DL+ R  G +LG  QSG  +       L++SLL+ A K  K 
Sbjct: 942  EAIQAMEELGSGFYLAMHDLEIRGAGAVLGDSQSG--EMQEVGFSLYNSLLDAAIKSLKA 999

Query: 666  ILTQDPDLTSVRGQSIRILLYL 687
                +PD+    G S  + L++
Sbjct: 1000 --GHEPDMQQPLGISTEVRLHV 1019


>gi|152973901|ref|YP_001373418.1| transcription-repair coupling factor [Bacillus cereus subsp.
            cytotoxis NVH 391-98]
 gi|152022653|gb|ABS20423.1| transcription-repair coupling factor [Bacillus cytotoxicus NVH
            391-98]
          Length = 1176

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 136/448 (30%), Positives = 232/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    ++   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAFTPDTAEQREFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERSRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKEQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALIREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPE--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQYDVLVSTTIIETGVDIPNVNTLIVYDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|182420058|ref|ZP_02951292.1| transcription-repair coupling factor [Clostridium butyricum 5521]
 gi|237669507|ref|ZP_04529487.1| transcription-repair coupling factor [Clostridium butyricum E4 str.
            BoNT E BL5262]
 gi|182376095|gb|EDT73682.1| transcription-repair coupling factor [Clostridium butyricum 5521]
 gi|237654951|gb|EEP52511.1| transcription-repair coupling factor [Clostridium butyricum E4 str.
            BoNT E BL5262]
          Length = 1166

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 144/461 (31%), Positives = 241/461 (52%), Gaps = 19/461 (4%)

Query: 217  DFEWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
              EW    A+ R + +E+    + L  MR   K       + + +  ++     P+  T 
Sbjct: 572  SAEWQKAKAKVRKSINEIAEDLVKLYAMRTTVKGH---KFSKDTQWQKQFEDEFPYDETP 628

Query: 276  SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
             Q +++++I  DM     M R+L GDVG GKT VAL A   AV  G Q  ++ P  ILA+
Sbjct: 629  DQLTSLEEIKADMESDKPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVALLVPTTILAE 688

Query: 336  QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
            QHY+ +K    +  I +++++       +++ L+++  G   I++GTH L    IQ+  L
Sbjct: 689  QHYKNMKNRFSDFPIKIDMVSRFRSAKEQKETLQKVKEGNIDILVGTHRLVSKDIQFKDL 748

Query: 396  ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
             L+IVDE+ RFGV+Q+ K+        VL ++ATPIPRTL ++  G  DIS I   P  R
Sbjct: 749  GLLIVDEEQRFGVKQKEKIKNIKKNVDVLTLSATPIPRTLHMSLSGVRDISVIETPPEER 808

Query: 456  KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             P++T ++  N    + + +   +  G + Y++  ++E     N  ++ +   +L     
Sbjct: 809  YPVQTYVVEQND-QLIRDAILREIGRGGQVYFVYNRVE-----NIDAIAKYVQNLVPE-- 860

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            S + +IHG+M++   E  M +F + T  +L+ TT+IE G+D+ + + II+ +A+  GL+Q
Sbjct: 861  SKVGVIHGQMAERQLEQEMFNFMDQTYNVLVCTTIIETGMDIQNVNTIIVYDADKMGLSQ 920

Query: 576  LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
            L+QLRGRVGR   I+   LLY     L++ +  RL  LK+      GF IA  DL+ R  
Sbjct: 921  LYQLRGRVGRSNRIAYAYLLYTKDKILTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGA 980

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            G ++G  Q G    +     L+  +LE   K  +  + ++P
Sbjct: 981  GNMMGSSQHGHMAAIGYD--LYCRMLEDTVKLIRGEIQKEP 1019


>gi|91788579|ref|YP_549531.1| transcription-repair coupling factor [Polaromonas sp. JS666]
 gi|91697804|gb|ABE44633.1| transcription-repair coupling factor [Polaromonas sp. JS666]
          Length = 1201

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 159/603 (26%), Positives = 261/603 (43%), Gaps = 39/603 (6%)

Query: 107  YRKTEMLKN--VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT 164
                  L+    F    ++   G   + +N+                   + + V     
Sbjct: 470  NTGFSWLEEGIDFITETELFAAGVTTRRRNKKQEQVSDVEALIKDLSELNVGDPVVHSAH 529

Query: 165  GLSVDLFKKIIVEAL------SRLPVLPEWIEKDLLQK---------KSFPSIAEAFNII 209
            G+    ++ ++   L         P L E++  +   K             S     +  
Sbjct: 530  GI--GRYRGLLNLDLGQDKNPDGSPSLQEFLHLEYADKATLYVPVSQLHLISRYTGVSAE 587

Query: 210  HNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
              P  +    +W    R+        A ++  +  R+  ++             +    +
Sbjct: 588  EAPLHRLGSGQWEKAKRKAAEQIRDSAAELLNIYARRAAREG--HAFRYSPGDYEAFAND 645

Query: 269  IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
              F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   A+  G Q  ++A
Sbjct: 646  FGFEETADQRAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFIAITGGKQVALLA 705

Query: 329  PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            P  +LA+QHY+ +        + V  ++          A++ +A G   I++GTH L   
Sbjct: 706  PTTLLAEQHYQTLVDRFAKWPVKVAEMSRFRSAREITAAIKGLADGSVDIVVGTHKLLSQ 765

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +++ +L L+I+DE+HRFGV+ +  +        VL +TATPIPRTL +   G  D+S I
Sbjct: 766  DVKFQRLGLLIIDEEHRFGVRHKETMKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSVI 825

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
               P  R  IKT +   N    + E +   L  G + Y++  ++E       ++  E+  
Sbjct: 826  ATAPQRRLAIKTFVRSENN-GVIREAVLRELKRGGQVYFLHNEVETI-----QNRREKLE 879

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
             +     + IA+ HG+M + + E VM  F      LL+ +T+IE GIDV  A+ I++  A
Sbjct: 880  EILPE--ARIAVAHGQMPERELERVMKDFVAQRYNLLLCSTIIETGIDVPSANTIVMSRA 937

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV---LKNTEDGFLIAEE 623
            + FGLAQLHQLRGRVGR    +   L+      L+K +  RL     ++    GF +A  
Sbjct: 938  DKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKQASQRLEAIQQMEELGSGFYLAMH 997

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            DL+ R  GE+LG  QSG    L    +L++ +L  A    K    ++PDL S    +  I
Sbjct: 998  DLEIRGTGEVLGESQSGNM--LEVGFQLYNEMLSEAVASLKA--GREPDLLSPLSVTTEI 1053

Query: 684  LLY 686
             L+
Sbjct: 1054 NLH 1056


>gi|228956495|ref|ZP_04118292.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            pakistani str. T13001]
 gi|228803185|gb|EEM50006.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            pakistani str. T13001]
          Length = 1183

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 141/467 (30%), Positives = 239/467 (51%), Gaps = 23/467 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 579  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 636

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 637  RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 696

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 697  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 756

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 757  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 816

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 817  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 868

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 869  TYAHGKMNESELESVMLSFLEGQYDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 928

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 929  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 988

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD------AKHILTQDPDLT 674
            LG +Q G    +     L+  +L+ A +       A++I+  + DL 
Sbjct: 989  LGAEQHGFIDSVGFD--LYSQMLKDAIEQRRGTDGAENIVNVEIDLE 1033


>gi|225869494|ref|YP_002745441.1| transcription-repair coupling factor [Streptococcus equi subsp.
           equi 4047]
 gi|225698898|emb|CAW91884.1| putative transcription-repair coupling factor [Streptococcus equi
           subsp. equi 4047]
          Length = 1164

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 237/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    +      E +A  +  L    +  ++ G   + + ++ +    +  F  
Sbjct: 555 KLNDGRFQKAKQRVKKQVEDIADDLLKLYA--ERSQQKGFQFSPDDELQRAFEEDFAFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +IK++ +DM     M R+L GDVG GKT VA+ A   A+    Q  I+ P  +L
Sbjct: 613 TDDQVRSIKEVKKDMESVRPMDRLLVGDVGFGKTEVAMRAAFKAIGDHKQVAILVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  ++  +N  + + +++    +  + ++LER+  GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYENFRERFENYPVEIAVLSRFRSKKEQSESLERLKKGQVDIIIGTHRLLSKDVIFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + +++  +++         V ++   L E 
Sbjct: 793 NRYPVQTYVLE-NNPGLIREAIIREMDRGGQVFYVYNKVDT--------VDKKVAELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MSDI  E+ +  F NG   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 844 VPEASIGFVHGQMSDIQLENTLMDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYKPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG    +     ++  LLE A
Sbjct: 964 RGAGNILGASQSGFIDSVGFD--MYSQLLEQA 993


>gi|90416638|ref|ZP_01224568.1| transcription-repair coupling protein Mfd [marine gamma
            proteobacterium HTCC2207]
 gi|90331391|gb|EAS46627.1| transcription-repair coupling protein Mfd [marine gamma
            proteobacterium HTCC2207]
          Length = 1173

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 150/473 (31%), Positives = 232/473 (49%), Gaps = 19/473 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+    +        A ++  +  R+  +   G   N   +  +K     PF  T  Q  
Sbjct: 574  WSKAKEKAAKQIRDTAAELLDIYARRAAR--KGFAFNDNEEDYRKFSGEFPFEETADQLE 631

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  + +D+     M R++ GDVG GKT VA+ A   AV +  Q VI+ P  +LA QH +
Sbjct: 632  AIDAVRRDLLSPQPMDRLVCGDVGFGKTEVAMRAAFTAVSSSKQVVILVPTTLLAHQHLQ 691

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +    N  I VE ++       + + +     G+  I+I TH L    I + +L L+I
Sbjct: 692  NFRDRFANWPIKVEELSRFRTSHEQDQVIADTESGKVDILISTHKLLHAKIDFERLGLLI 751

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+Q+ K+    ++  +L MTATPIPRTL L+     D+S I   PA R  +K
Sbjct: 752  IDEEHRFGVRQKDKIKSMRSSVDILTMTATPIPRTLNLSMHAVRDLSIIATPPARRLSVK 811

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T I          E +   +  G + Y++   ++     N +   +    L     + I 
Sbjct: 812  TFIRQREDR-VTREAILREILRGGQVYFLHNDVK-----NIQRTADELALLVPE--ARIN 863

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M +   E VM  F +    +L+ TT+IE GID+  A+ I+IE A+ FGLAQLHQL
Sbjct: 864  VAHGQMRERQLEQVMSDFYHQRFNVLVCTTIIETGIDIPSANTILIERADKFGLAQLHQL 923

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL  PP  ++ ++  RL  +    +   GF +A  DL+ R  GE+L
Sbjct: 924  RGRVGRSHHQAYAYLLTPPPKTMTSDALKRLEAISAADHLGSGFTLATNDLEIRGAGELL 983

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G +QSG  + +     L+  +LE A    K+   +  +L S   Q I + L+L
Sbjct: 984  GEEQSGHIQAI--GFTLYLEMLERAVNAIKN--GKQAELGSALDQGIEVNLHL 1032


>gi|306992467|gb|ADN19350.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 167/452 (36%), Positives = 266/452 (58%), Gaps = 8/452 (1%)

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL- 179
            +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL 
Sbjct: 1   EEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALH 60

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+A
Sbjct: 61  DYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMA 117

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++Q
Sbjct: 118 LFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQ 175

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++
Sbjct: 176 GDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSI 235

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K  
Sbjct: 236 SPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGE 295

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     +
Sbjct: 296 NPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEV 355

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSF 537
            +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F
Sbjct: 356 KKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEF 415

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 VNGKIDILVSTTVIEVGVNVPNATVMIVENAE 447


>gi|328945180|gb|EGG39335.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK1087]
          Length = 1167

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 240/452 (53%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     + +A  +  L    +  +  G   + +    ++   + P+  
Sbjct: 559 KLNDGRFQKSKQKVQHQVQDIADDLIKLYA--ERSQLKGFAFSADDSNQEEFDNDFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I+++ +DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 617 TEDQLRSIQEVKKDMESSRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  + VE+++    +A +++ LE++  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHYTNFKERFNDFAVNVEVLSRFRSKAEQKQTLEKLQKGQVDIIIGTHRLLSKDVEFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIIIDEEQRFGVKHKEKLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 797 NRYPVQTYVLESNPT-VIREAVLREIDRGGQVYYLYNKVDTIE--------QKVSELREL 847

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ + +ENA+H G
Sbjct: 848 IPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGSMQSGFID--SVGFEMYSQLLEEA 997


>gi|325954433|ref|YP_004238093.1| transcription-repair coupling factor [Weeksella virosa DSM 16922]
 gi|323437051|gb|ADX67515.1| transcription-repair coupling factor [Weeksella virosa DSM 16922]
          Length = 1114

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 137/459 (29%), Positives = 230/459 (50%), Gaps = 18/459 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +   +     + +A  +  L  +++ +   G   + +  +  ++  +  +  T  QE 
Sbjct: 499 WRNLKNKTKTKVKEIAFDLIKLYAKRRTQ--KGFAFSPDTYLQNELEASFIYEDTPDQEK 556

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM  +  M R++ GDVG GKT VA+ A   A   G Q  ++ P  ILA QH++
Sbjct: 557 ATLDVKNDMESERPMDRLVCGDVGFGKTEVAIRAAFKAAVDGKQVAVLVPTTILAFQHFK 616

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                 +   + +E +        +   L  +  G+  IIIGTH L    +++  L L+I
Sbjct: 617 TFTDRLKEFPVQIEYLNRFTTTKKKNAILADLEAGKVDIIIGTHQLVNPKVKFKDLGLLI 676

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+H+FGV  + KL         L +TATPIPRTL  + +   D+S I   P  R+P++
Sbjct: 677 IDEEHKFGVSVKDKLKTLRANIDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVE 736

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +I  N  + + + +   +  G + ++I  +++  KE            L     + IA
Sbjct: 737 TNLIEFNE-EAIRDAILYEMQRGGQIFFIHNRVQTLKEIAG-----MVQRLVPD--ARIA 788

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG+M     E++M  F +G   +LI+TT+IE G+DV +A+ I+I +A++FGLA LHQ+
Sbjct: 789 TGHGQMDGKQLEAIMLDFIDGQYDVLISTTIIESGLDVPNANTILINDAQNFGLADLHQM 848

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    + C L+  P   L+  +  RL  ++   D   GF IA +DL+ R  G +L
Sbjct: 849 RGRVGRSNRKAFCYLIAPPVSVLTNEARKRLQAIEQFSDLGSGFNIAMKDLEIRGAGNLL 908

Query: 635 GIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQD 670
           G +Q+G      F   Q  L++++ E+   D K +   +
Sbjct: 909 GAEQTGFMMEIGFETYQKILNEAIEELKESDFKELFEHE 947


>gi|261367666|ref|ZP_05980549.1| transcription-repair coupling factor [Subdoligranulum variabile DSM
           15176]
 gi|282570458|gb|EFB75993.1| transcription-repair coupling factor [Subdoligranulum variabile DSM
           15176]
          Length = 1153

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 140/478 (29%), Positives = 229/478 (47%), Gaps = 21/478 (4%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           DLL + + P   +   +          +W    ++  A  E +A ++  L  R+  K+  
Sbjct: 536 DLLSRYTAPGDKDNVKLSR----LGGSDWAKTRKKVRAATEAMAKELIELYARR--KQAK 589

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G     +        +   +  T  Q +   DI  DM Q   M R+L GDVG GKT VAL
Sbjct: 590 GYAFPADDTWQGDFEQRFAYEETPDQLTCAADIKHDMEQPWPMDRLLCGDVGVGKTEVAL 649

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A    V  G Q  I+AP  ILA QH+       +   I + +++       +++ L  +
Sbjct: 650 RAAFKCVMGGKQCAILAPTTILAWQHFNTAIARMEAYPIRIGLLSRYRSSKEQKETLRGL 709

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G   I++GTH L  D +++  L LVI+DE+ RFGV+ + KL +      +L ++ATPI
Sbjct: 710 KDGTVDIVVGTHRLLSDDVKFRDLGLVIIDEEQRFGVKHKEKLKEAFIGVDMLTLSATPI 769

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL +   G  D+S I + P  R+P++T ++  +    V E ++  L+ G + Y++  +
Sbjct: 770 PRTLNMALSGIRDMSTIEQPPFERQPVETYVLEYDE-GIVSEAIRKELARGGQVYYLHNR 828

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           ++   E   R              + + I HG+M++    SV     +    +L+ TT+I
Sbjct: 829 VDTINECAARIG-------KMVPGARVGIAHGKMTEEQISSVWQQLLDNEIDVLVCTTLI 881

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLS 609
           E G+DV + + +IIENA+  GL+QL+QLRGRVGR    +     +     L++ +  RLS
Sbjct: 882 ETGVDVRNCNTLIIENADRMGLSQLYQLRGRVGRSSRKAYAYFTFTRDKVLTEVAAKRLS 941

Query: 610 VLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            ++       GF IA  DL+ R  G +LG  Q G  + +     L+  +L  A   A+
Sbjct: 942 AIREFTAFGSGFRIAMRDLQIRGAGSLLGHSQHGHMEAVGYD--LYVKMLGQAIATAR 997


>gi|163791051|ref|ZP_02185472.1| transcription-repair coupling factor [Carnobacterium sp. AT7]
 gi|159873696|gb|EDP67779.1| transcription-repair coupling factor [Carnobacterium sp. AT7]
          Length = 1173

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 144/446 (32%), Positives = 236/446 (52%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++     E +A ++  L      ++E+G   + +    ++     P++ T  Q 
Sbjct: 570  EWAKTKKKVATKIEDIADELIELYA--SREQEVGYAFSPDDAYQEEFENAFPYTETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM QK  M R+L GDVG GKT VA+ A+  AV+ G QA  + P  ILAQQHY
Sbjct: 628  RSTAEIKHDMEQKKPMDRLLVGDVGYGKTEVAMRAVFKAVQEGKQAAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +   +  I + +++    +  + + +  +  GQ  I+IGTH +    I++  L L+
Sbjct: 688  ETMLQRFADFPIEIGLLSRFRTKKQQNETIAGLKKGQVDIVIGTHRILSKDIEFQDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 748  IVDEEQRFGVKHKEKLKQLKAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPV 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  V E ++  ++ G + +++  ++   ++      V+    L     + I
Sbjct: 808  QTYVMEQN-LGAVREAVEREMARGGQVFYLYNRVATIEKK-----VDELQQLIPD--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+ +  F  G   +L+ TT+IE G+D+ + + + +ENA+H GL+QL+Q
Sbjct: 860  GYAHGQMTEGQLENTLFQFIEGEYDVLVTTTIIETGVDMPNVNTLFVENADHMGLSQLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    LY P   L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSNRVAYAYFLYQPNKVLNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G    +     L+  +L  A
Sbjct: 980  LGSQQHGFIDSVGFD--LYSEMLSEA 1003


>gi|296875514|ref|ZP_06899586.1| transcription-repair coupling factor [Streptococcus parasanguinis
           ATCC 15912]
 gi|296433438|gb|EFH19213.1| transcription-repair coupling factor [Streptococcus parasanguinis
           ATCC 15912]
          Length = 1167

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 146/452 (32%), Positives = 239/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + + +  +   ++ P+  
Sbjct: 555 KLNDGRFQKTKQKVQTQVEDIADDLIKLYA--ERSQLEGFAYSKDDENQEAFEQDFPYIE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TDDQLRSIEEIKKDMESNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  ++  + V +++    +A +++ LE++  G+  IIIGTH L    + + 
Sbjct: 673 AQQHYANFKERFESFAVEVAVLSRFQSKAEQKETLEKLKKGRVDIIIGTHRLLSKDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G +AY++  +++  +        ++ + L E 
Sbjct: 793 NRYPVQTFVLETNPT-IIRDAVLREMDRGGQAYYLYNKVDTIE--------QKVSELKEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS++  E+ +  F NG   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 844 IPEASIGFVHGQMSEVRLENTLLDFINGEYDVLVTTTIIETGVDIPNANTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKSLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEEA 993


>gi|291531663|emb|CBK97248.1| transcription-repair coupling factor [Eubacterium siraeum 70/3]
          Length = 1171

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 139/434 (32%), Positives = 217/434 (50%), Gaps = 18/434 (4%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  L  R+   K  G   + + +       +  +  T  Q   I++I  DM +   M R
Sbjct: 583  ELIELYSRR--MKAKGFAFSPDTEQQHIFEDHFSYVETDDQLRCIEEIKHDMMRTAPMER 640

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            +L GDVG GKT VAL A    +  G Q  I+ P  +LA QHY+ + K  +   I VE+++
Sbjct: 641  LLCGDVGFGKTEVALRAAFKCIGDGKQCAILVPTTVLAWQHYQTVLKRMEGFDIRVELLS 700

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                   ++  L+++  G+  +++GTH L QD +++  L LVI+DE+ RFGV  + KL +
Sbjct: 701  RFRTAKEQKIILKKLEEGELDLVVGTHRLVQDDVKFKDLGLVIIDEEQRFGVNDKEKLKE 760

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
              T   VL ++ATPIPRTL +   G  D+S I   P  R PI T ++  +R   + + + 
Sbjct: 761  AFTNVDVLTLSATPIPRTLNMAMSGIRDMSVIETPPGDRHPITTYVVEHDR-GVIAQAIN 819

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              L    + Y++  +IE              +       ++I I HGRMS+ +   V   
Sbjct: 820  KELRRNGQVYYVHNRIESIYSC-------AADIHSMVPEANIGIAHGRMSEEELLDVWRR 872

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
               G   +L+ TT+IE G+DV + + +IIENA+  GLAQLHQLRGRVGR    +     +
Sbjct: 873  LIEGEIDVLVCTTLIETGVDVPNCNTLIIENADCMGLAQLHQLRGRVGRTNRRAYAYFTF 932

Query: 597  H--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ--- 648
                 LS+ +  RL  ++       GF IA +DL+ R  G +LG  QSG    +      
Sbjct: 933  RRGKVLSEIATKRLDAIREFTRFGSGFRIAMKDLEIRGAGSVLGQSQSGHLASVGYDMYI 992

Query: 649  PELHDSLLEIARKD 662
              L++++LE   K 
Sbjct: 993  KLLNEAILEQQGKA 1006


>gi|253576880|ref|ZP_04854205.1| transcription-repair coupling factor [Paenibacillus sp. oral taxon
            786 str. D14]
 gi|251843747|gb|EES71770.1| transcription-repair coupling factor [Paenibacillus sp. oral taxon
            786 str. D14]
          Length = 1177

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 137/459 (29%), Positives = 228/459 (49%), Gaps = 18/459 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +  +  + +A  +  L   +Q     G     +    Q+     P+  T  Q 
Sbjct: 564  EWNRVKNKVRSSVQNIADDLIKLYAERQAA--PGYAFEKDTPEQQEFEAMFPYEETPDQL 621

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI++I +DM Q   M R+L GDVG GKT VA+ A   A   G Q  ++ P  ILAQQHY
Sbjct: 622  RAIEEIKRDMEQSRPMDRLLCGDVGYGKTEVAIRAAFKAAIEGKQVAVLVPTTILAQQHY 681

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  ++      I ++ ++    +  + + ++ I  G   I+IGTH +    + +  L L+
Sbjct: 682  ETFRERFAGYPINIQTLSRFRSRKEQNETIKGIRQGTVDIVIGTHRILSQDLVFKDLGLL 741

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 742  IVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 801

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T ++  ++   V E ++  ++ G + Y++  +++         + E    +      + 
Sbjct: 802  QTYVVEYSQ-SLVREAIEREMARGGQIYYLYNRVQ--------GIHEMAAQISMLVPEAR 852

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + + HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +A+  GL+QL+
Sbjct: 853  VVVGHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLY 912

Query: 578  QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   I+     Y     L++ +  RL  +K       GF IA  DL  R  G 
Sbjct: 913  QLRGRVGRSNRIAYAYFTYQKDKSLTEVAEKRLQSIKEFTELGSGFKIAMRDLAIRGAGN 972

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            +LG +Q G    +         L E  +K    +L + P
Sbjct: 973  LLGAEQHGFIASVGFDLY-SQMLAEEIQKRKITMLGETP 1010


>gi|255025717|ref|ZP_05297703.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J2-003]
          Length = 626

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 142/452 (31%), Positives = 240/452 (53%), Gaps = 19/452 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T+ Q 
Sbjct: 20  EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSADDEMQREFEEAFPYQETEDQL 77

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQH+
Sbjct: 78  RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHF 137

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 138 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 197

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 198 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 257

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +   N +  V E ++  L+   + Y++  ++E        S+ ++ + +      + 
Sbjct: 258 QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVE--------SITQKADEISAMVPDAR 308

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+
Sbjct: 309 VATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLY 368

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGRVGR   I+    +Y     L + +  RLS +K       GF IA  DL  R  G 
Sbjct: 369 QLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGN 428

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           ILG +Q G    +     L+  +L+ A +  K
Sbjct: 429 ILGAQQHGFIDSVGFD--LYSQMLKEAIEAKK 458


>gi|306992373|gb|ADN19303.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992377|gb|ADN19305.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 166/453 (36%), Positives = 266/453 (58%), Gaps = 8/453 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  KDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           F N    +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 FVNREIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|297582393|ref|YP_003698173.1| transcription-repair coupling factor [Bacillus selenitireducens
            MLS10]
 gi|297140850|gb|ADH97607.1| transcription-repair coupling factor [Bacillus selenitireducens
            MLS10]
          Length = 1186

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 146/474 (30%), Positives = 242/474 (51%), Gaps = 17/474 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  +  + +A  +  L   +Q     G   + +G   ++     P+  T  Q 
Sbjct: 572  EWKKVKKKVQSSVQDIADDLIKLYAERQE--TKGFAFSPDGLEQREFESTFPYQETDDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI++I +DM Q   M R+L GDVG GKT VAL A   A+  G Q  I+ P  ILAQQHY
Sbjct: 630  QAIEEIKKDMEQDRPMDRLLCGDVGYGKTEVALRAAFKAIMDGKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +   ++  E +  G   I++GTH +    + + +L L+
Sbjct: 690  ETIRERFQDFAINIGMLSRFRTRKQMKETTEALRKGTCDIVVGTHRILSKDVAFKELGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  VVDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  L+   + +++  ++E+ +    R  +           ++I
Sbjct: 810  QTYVVEHND-AFVREAIERELAREGQVFYLYNRVEDIEMVADRIGM-------MVPDANI 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HGRM++   E+VM  F +G   +L+ TT+IE G+D+ + + +II+ A+  GL+QL+Q
Sbjct: 862  AFAHGRMTEAQLEAVMLDFLSGETDVLVTTTIIETGVDIPNVNTLIIQEADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     +     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFTHQQDKVLTEVAERRLQSIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            LG +Q G         +L+  +L+ A  D K  +    +  +   Q+  I L +
Sbjct: 982  LGAEQHGFI--ASVGFDLYSQMLKEAIDDRKAGMDGKEEAEAQPSQAPDIDLDI 1033


>gi|298207099|ref|YP_003715278.1| transcription-repair coupling factor [Croceibacter atlanticus
           HTCC2559]
 gi|83849733|gb|EAP87601.1| transcription-repair coupling factor [Croceibacter atlanticus
           HTCC2559]
          Length = 1126

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 137/451 (30%), Positives = 234/451 (51%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++  +  + +A  +  L  +++ +   G     +  +  ++  +  +  T  Q S
Sbjct: 507 WKKLKQKTKSKVKEIAFNLIKLYAKRRLE--KGFAFGPDTTMQLELESSFIYEDTPDQSS 564

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D+ +DM  +  M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  ILA QH++
Sbjct: 565 ATEDVKKDMENERPMDRLVCGDVGFGKTEIAIRAAFKAVDNGKQVAVLVPTTILAFQHHK 624

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + VE +        RR+ +  +  G+  IIIGTH L   ++++  L L+I
Sbjct: 625 TFSERLKDFPVTVEYLNRFRSAKERRETIADLEAGKVDIIIGTHQLVNKTVKFKDLGLLI 684

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL         L +TATPIPRTL  + +   D+S IT  P  R P++
Sbjct: 685 VDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLSTITTPPPNRYPVE 744

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +I  +  + + + ++  +  G + Y++  +IE  KE                  + I 
Sbjct: 745 TNVIRFSE-ESIRDAVQYEIQRGGQVYFVHNRIENIKEVAGMIQ-------RVVPDAKIG 796

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E +M SF NG   +L++TT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 797 IGHGQMEGKKLEQLMLSFMNGDFDVLVSTTIIESGLDVPNANTIFINNANNFGLSDLHQM 856

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   ++ ++  R++ L+   D   GF IA +DL+ R  G++L
Sbjct: 857 RGRVGRSNKKAFCYFITPPYSAMTDDARKRITALEQFSDLGSGFNIAMKDLEIRGAGDLL 916

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG    +      +  +L  A ++ K 
Sbjct: 917 GGEQSGFINEIGFD--TYQKILNEAIEELKE 945


>gi|297587541|ref|ZP_06946185.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516]
 gi|297574230|gb|EFH92950.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516]
          Length = 1168

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 143/439 (32%), Positives = 233/439 (53%), Gaps = 18/439 (4%)

Query: 231  DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            DE+    + L   R + K       + + +  ++   + P+  T SQ  +I++I  DM  
Sbjct: 588  DEMADDLVELYSKRAKLKG---YQFSQDTEWQREFEDSFPYEETDSQVRSIEEIKTDMES 644

Query: 291  KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
               M R+L GDVG GKT VA+ A   A+  G Q   + P  ILAQQH+  IK+  ++  I
Sbjct: 645  DRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVAFLVPTTILAQQHFNTIKERFRDYPI 704

Query: 351  IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             VE+++  +  A +++ ++ +  G   +++GTH +   ++++  L L+++DE+ RFGV+ 
Sbjct: 705  RVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGVRH 764

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            + KL        VL ++ATPIPRTL +   G  D+S + E P  R PI T +   N    
Sbjct: 765  KEKLKSMRENVDVLTLSATPIPRTLQMGLTGIRDMSLLEEPPEDRTPISTYVTEYN-PSL 823

Query: 471  VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            + + +   L  G + Y++  +IE+  +  F+        L      +IAI HGRM++ + 
Sbjct: 824  IRDAIIRELDRGGQIYFVYNRIEDIDQMEFK-----LKELVPEL--NIAIAHGRMNEKEL 876

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E+VM  F++G   LL+ TT+IE G+D+ + + +II NA+  GL+QL+QL+GR+GR +  S
Sbjct: 877  ENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKMGLSQLYQLKGRIGRSDRTS 936

Query: 591  SCILLY--HPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
                 Y     L++ S  RL  +K       GF IA  DL+ R  G +LG  Q G    +
Sbjct: 937  FAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRDLELRGAGNLLGESQHGHIAKI 996

Query: 646  IAQPELHDSLLEIARKDAK 664
                 L+  LLE A ++AK
Sbjct: 997  GYD--LYVKLLEQAVREAK 1013


>gi|291556783|emb|CBL33900.1| transcription-repair coupling factor [Eubacterium siraeum V10Sc8a]
          Length = 1175

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 139/434 (32%), Positives = 217/434 (50%), Gaps = 18/434 (4%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  L  R+   K  G   + + +       +  +  T  Q   I++I  DM +   M R
Sbjct: 583  ELIELYSRR--MKAKGFAFSPDTEQQHIFEDHFSYVETDDQLRCIEEIKHDMMRTAPMER 640

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            +L GDVG GKT VAL A    +  G Q  I+ P  +LA QHY+ + K  +   I VE+++
Sbjct: 641  LLCGDVGFGKTEVALRAAFKCIGDGKQCAILVPTTVLAWQHYQTVLKRMEGFDIRVELLS 700

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                   ++  L+++  G+  +++GTH L QD +++  L LVI+DE+ RFGV  + KL +
Sbjct: 701  RFRTAKEQKIILKKLEEGELDLVVGTHRLVQDDVKFKDLGLVIIDEEQRFGVNDKEKLKE 760

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
              T   VL ++ATPIPRTL +   G  D+S I   P  R PI T ++  +R   + + + 
Sbjct: 761  AFTNVDVLTLSATPIPRTLNMAMSGIRDMSVIETPPGDRHPITTYVVEHDR-GVIAQAIN 819

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              L    + Y++  +IE              +       ++I I HGRMS+ +   V   
Sbjct: 820  KELRRNGQVYYVHNRIESIYSC-------AADIHSMVPEANIGIAHGRMSEEELLDVWRR 872

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
               G   +L+ TT+IE G+DV + + +IIENA+  GLAQLHQLRGRVGR    +     +
Sbjct: 873  LIEGEIDVLVCTTLIETGVDVPNCNTLIIENADCMGLAQLHQLRGRVGRTNRRAYAYFTF 932

Query: 597  H--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ--- 648
                 LS+ +  RL  ++       GF IA +DL+ R  G +LG  QSG    +      
Sbjct: 933  RRGKVLSEIATKRLDAIREFTRFGSGFRIAMKDLEIRGAGSVLGQSQSGHLASVGYDMYI 992

Query: 649  PELHDSLLEIARKD 662
              L++++LE   K 
Sbjct: 993  KLLNEAILEQQGKA 1006


>gi|306992425|gb|ADN19329.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 167/454 (36%), Positives = 266/454 (58%), Gaps = 8/454 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  KKI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIKKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  KDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           F N    +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 FVNREIDILVSTTVIEVGVNVPNATVMIVENAER 449


>gi|167751280|ref|ZP_02423407.1| hypothetical protein EUBSIR_02266 [Eubacterium siraeum DSM 15702]
 gi|167655787|gb|EDR99916.1| hypothetical protein EUBSIR_02266 [Eubacterium siraeum DSM 15702]
          Length = 1175

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 139/434 (32%), Positives = 218/434 (50%), Gaps = 18/434 (4%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  L  R+   K  G   + + +       +  +  T  Q   I++I  DM +   M R
Sbjct: 583  ELIELYSRR--MKAKGFAFSPDTEQQHIFEDHFSYVETDDQLRCIEEIKHDMMRTAPMER 640

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            +L GDVG GKT VAL A    +  G Q  I+ P  +LA QHY+ + K  +   I VE+++
Sbjct: 641  LLCGDVGFGKTEVALRAAFKCIGDGKQCAILVPTTVLAWQHYQTVLKRMEGFDIRVELLS 700

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                   ++  L+++  G+  +++GTH L QD +++  L LVI+DE+ RFGV  + KL +
Sbjct: 701  RFRTAKEQKIILKKLEEGELDLVVGTHRLVQDDVKFKDLGLVIIDEEQRFGVNDKEKLKE 760

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
              T   VL ++ATPIPRTL +   G  D+S I   P  R PI T ++  +R   + + + 
Sbjct: 761  AFTNVDVLTLSATPIPRTLNMAMSGIRDMSVIETPPGDRHPITTYVVEHDR-GVIAQAIN 819

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              L    + Y++  +IE              +       ++I I HGRMS+ +  +V   
Sbjct: 820  KELRRNGQVYYVHNRIESIYSC-------AADIHSMVPEANIGIAHGRMSEEELLNVWRR 872

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
               G   +L+ TT+IE G+DV + + +IIENA+  GLAQLHQLRGRVGR    +     +
Sbjct: 873  LIEGEIDVLVCTTLIETGVDVPNCNTLIIENADCMGLAQLHQLRGRVGRTNRRAYAYFTF 932

Query: 597  H--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ--- 648
                 LS+ +  RL  ++       GF IA +DL+ R  G +LG  QSG    +      
Sbjct: 933  RRGKVLSEIATKRLDAIREFTRFGSGFRIAMKDLEIRGAGSVLGQSQSGHLASVGYDMYI 992

Query: 649  PELHDSLLEIARKD 662
              L++++LE   K 
Sbjct: 993  KLLNEAILEQQGKA 1006


>gi|157690837|ref|YP_001485299.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032]
 gi|157679595|gb|ABV60739.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032]
          Length = 1177

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 235/449 (52%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++  +  + +A  +  L   ++     G   + + ++ ++     P+  T  Q 
Sbjct: 572  DWKRVKKKVESSVQDIADDLIKLYAEREA--SKGYAFSPDHEMQRQFESAFPYQETDDQI 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I QDM ++  M R+L GDVG GKT VA+ A   A+  G Q  ++ P  ILAQQH+
Sbjct: 630  RSIHEIKQDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVPTTILAQQHF 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + I    Q+  + +  ++    +    + L+ + +G   ++IGTH L    I Y  L L+
Sbjct: 690  DTIMDRFQDYPVKIAQLSRFRTRKETTETLKGLKNGTIDMVIGTHRLLSKDIVYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQMKANIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYNG-ALVREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--AKV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            +  HG+MS+ + ESVM +F  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  SYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDIPNVNTLIVHDADKMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +Q G    +     L+  +L+ A ++
Sbjct: 982  LGAQQHGFIDSVGFD--LYSQMLKEAIEE 1008


>gi|332522484|ref|ZP_08398736.1| transcription-repair coupling factor [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313748|gb|EGJ26733.1| transcription-repair coupling factor [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 1166

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 150/451 (33%), Positives = 243/451 (53%), Gaps = 17/451 (3%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L +  +  +  G   + + ++ +    + PF  
Sbjct: 555 KLNDGRFQKTKQKVSKQVEDIADDL--LRLYAERSQLKGFQFSPDDELQESFDNDFPFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I++I +DM  +  M R+L GDVG GKT VA+ A   AV+   Q  I+ P  +L
Sbjct: 613 TEDQLRSIQEIKKDMESQLPMDRLLVGDVGFGKTEVAMRAAFKAVKDHKQVAILVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY+  ++  +N  + V++++    +  +  +LE++A GQ  IIIGTH L    +Q+ 
Sbjct: 673 AQQHYDNFRERFENYPVEVDVLSRFRSKKEQNTSLEKLAKGQVDIIIGTHRLLSKDVQFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +  +   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKEKLKELKSKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++   +   +        L   
Sbjct: 793 NRYPVQTYVLETN-PSLVREAILREMDRGGQVFYVYNKVDTIDKKVSQ-----LQELVPE 846

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             ++I  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + +ENA+H GL
Sbjct: 847 --AAIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENADHMGL 904

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQR 628
           + L+QLRGRVGR   I+   L+Y P   LS+ S  RL  +K       GF IA  DL  R
Sbjct: 905 STLYQLRGRVGRSNRIAYAYLMYRPDKILSEISEKRLEAIKGFTELGSGFKIAMRDLAIR 964

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G ILG  QSG         E++  LLE A
Sbjct: 965 GAGNILGASQSGFID--SVGFEMYSQLLEEA 993


>gi|294340382|emb|CAZ88763.1| Transcription-repair coupling factor (TRCF) (ATP-dependent helicase
            mfd) [Thiomonas sp. 3As]
          Length = 1160

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 151/474 (31%), Positives = 235/474 (49%), Gaps = 19/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  +  R+      G       +  +    +  F  T  Q 
Sbjct: 558  QWDKARRKAAEQVRDAAAELLNIYARRAA--HQGHAFRYSPQDYEAFAASFGFEETPDQA 615

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++QDM     M R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QH 
Sbjct: 616  AAIHAVVQDMISPKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLAEQHC 675

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  +    +  + +  ++          AL+ +A G   I+IGTH L   ++++ +L LV
Sbjct: 676  ETFRNRFADWPVRIAEMSRFRSTKEISAALDGLARGTVDIVIGTHKLLSPTVKFDRLGLV 735

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+HRFGV+ +  L     +  +L +TATPIPRTL +   G  D+S I   P  R  I
Sbjct: 736  IVDEEHRFGVRHKEALKAMRASVDLLTLTATPIPRTLGMALEGLRDLSVIATAPQKRLAI 795

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +   +    + E +   +  G + Y++  ++E  +     +   +   L     + I
Sbjct: 796  KTFVRSESG-AVMREAILREIKRGGQVYFLHNEVETIE-----NRRRQLEELVPE--ARI 847

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + D E VM  F      +L+ TT+IE GIDV  A+ I++  A+ FGLAQLHQ
Sbjct: 848  EIAHGQMHERDLERVMRDFHAQRFNILLCTTIIETGIDVPSANTIVMARADKFGLAQLHQ 907

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL      L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 908  LRGRVGRSHHQAYAYLLVPDVQSLTKQASQRLEAIQQMEELGSGFYLAMHDLEIRGAGEV 967

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            LG +QSG  + +  Q  L++ +L  A K  +    ++PDL +  G +  I L++
Sbjct: 968  LGEQQSGNMQEIGFQ--LYNDMLGEAVKALRA--GREPDLLNPLGVTTEINLHV 1017


>gi|119897964|ref|YP_933177.1| transcription-repair coupling factor [Azoarcus sp. BH72]
 gi|119670377|emb|CAL94290.1| transcription-repair coupling factor [Azoarcus sp. BH72]
          Length = 1150

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 149/473 (31%), Positives = 233/473 (49%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++        A ++  L  ++  +   G   + +    +       F  T  Q+
Sbjct: 556  QWEKAKKKAAMQVRDTAAELLALYAQRAAR--PGHRFDFKQHDLEAFAEAFGFETTPDQQ 613

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM     M R++ GDVG GKT VAL A   AV  G Q V++ P  +LA+QHY
Sbjct: 614  AAIDAVVGDMKSGRPMDRLVCGDVGFGKTEVALRAAFIAVADGKQVVVLCPTTLLAEQHY 673

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  I +  ++       + +AL+++  G+  IIIGTH L Q  + + +L LV
Sbjct: 674  QTFADRFADWPIKIAELSRFKSAKEQAEALKQLGEGKVDIIIGTHRLLQKDVLFKRLGLV 733

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L Q  +   +L +TATPIPRTL L   G  + S I   P  R  I
Sbjct: 734  IIDEEHRFGVRQKEALKQLRSEVDILTLTATPIPRTLGLAMEGLREFSVIATAPQKRLAI 793

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +   ++   V E +      G + Y++  +++  +        E    L E   + I
Sbjct: 794  KTFVQRWSK-GIVREAVLREFKRGGQVYFLHNEVDTIENV----RNELAELLPE---ARI 845

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG++ + + E VM  F      LL+ TT+IE GI++  A+ I+I  A+ FGLAQLHQ
Sbjct: 846  VVGHGQLPERELERVMRDFTQQRANLLLCTTIIETGINIPTANTIVINRADRFGLAQLHQ 905

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL   H   +  +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 906  LRGRVGRSHHQAYAYLLTDAHAKPTAQAQKRLEAISMMEELGSGFYLAMHDLEIRGAGEV 965

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG  QSG  +       L+  +L+ A KD +    ++PDL+        I L+
Sbjct: 966  LGENQSG--EIQQVGFSLYTEMLKRAVKDLQA--GKEPDLSQPLEVVSEINLH 1014


>gi|312901071|ref|ZP_07760360.1| transcription-repair coupling factor [Enterococcus faecalis TX0470]
 gi|311291817|gb|EFQ70373.1| transcription-repair coupling factor [Enterococcus faecalis TX0470]
          Length = 1189

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 818  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 870  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 929

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 930  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 990  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1022


>gi|307278656|ref|ZP_07559726.1| transcription-repair coupling factor [Enterococcus faecalis TX0860]
 gi|306504716|gb|EFM73916.1| transcription-repair coupling factor [Enterococcus faecalis TX0860]
          Length = 1189

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 818  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 870  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 929

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 930  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 990  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1022


>gi|119945864|ref|YP_943544.1| transcription-repair coupling factor [Psychromonas ingrahamii 37]
 gi|119864468|gb|ABM03945.1| fused transcription-repair coupling factor and superfamily II
            helicase [Psychromonas ingrahamii 37]
          Length = 1163

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 145/497 (29%), Positives = 244/497 (49%), Gaps = 22/497 (4%)

Query: 198  SFPSIAEAFNIIHNPRKAKDFE-WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     ++ + P      E W    ++       +A ++  +  ++  K      +N
Sbjct: 538  QLISRYSGHDVENAPINKLGTETWQKAKKQAAEKVRDVAAELLEVYAQRAAKVGHQYKLN 597

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
                       + PF  T  Q   IK ++ DM     M R++ GDVG GKT VA+ A   
Sbjct: 598  K--THYALFSNDFPFEETHDQALTIKAVISDMCSSQPMDRLVCGDVGFGKTEVAMRAAFI 655

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A +   Q  ++ P  +LAQQHYE  K    +  + +E+++       ++  LE +  G+ 
Sbjct: 656  ATDNLRQVALLVPTTLLAQQHYENFKDRFADWPVRIEVLSRFKTAKQQKLILEEVNQGKI 715

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L   ++Q+  L L+I+DE+HRFGV+Q+ K+        +L +TATPIPRTL 
Sbjct: 716  DILIGTHKLLSSNVQFADLGLLIIDEEHRFGVRQKEKIKALRAQIDILTLTATPIPRTLN 775

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEK 495
            ++  G  D+S I   PA R  +KT ++   + D++I + +   +  G + Y++   +   
Sbjct: 776  MSMNGMRDLSIIATPPAKRLAVKTFVVQ--KKDQIISDAITREIMRGGQVYFLHNNVATI 833

Query: 496  KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            ++          +       + +A+ HG+M++   E +M  F +    +L+ +T+IE GI
Sbjct: 834  EK-------AAHDIQQLIPQAKVAVAHGQMNEHQLEKIMADFYHQRQNVLVCSTIIETGI 886

Query: 556  DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN 613
            D+  A+ III  A+H GLAQLHQLRGRVGR    +   LL   P  ++K++  RL  ++ 
Sbjct: 887  DIPSANTIIINRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPKPKLMTKDAQKRLQAIEA 946

Query: 614  TE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
             +    GF +A  DL+ R  GE+LG +QSG    +     L+  +L  A +  K+   Q+
Sbjct: 947  LDTLGAGFTLATHDLEIRGAGELLGDEQSGQIASIGYN--LYMEMLNQAIEALKN--GQE 1002

Query: 671  PDLTSVRGQSIRILLYL 687
            P L  +      + L +
Sbjct: 1003 PTLEHLMASQAEVELRI 1019


>gi|329897463|ref|ZP_08272106.1| Transcription-repair coupling factor [gamma proteobacterium IMCC3088]
 gi|328921160|gb|EGG28563.1| Transcription-repair coupling factor [gamma proteobacterium IMCC3088]
          Length = 1150

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 143/474 (30%), Positives = 232/474 (48%), Gaps = 21/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++       +A Q+  +  R++ +   G    ++    ++     PF  T  Q 
Sbjct: 550  QWEKARKKASERASDVAAQLLEVYARREAR--KGFAHELDPLDYERFCSGFPFEETPDQA 607

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+ +  DM  +  M R++ GDVG GKT VA+ A   A     Q  ++ P  +LAQQHY
Sbjct: 608  LAIEAVRNDMCAQKVMDRLVCGDVGFGKTEVAMRAAFIASHNSKQVAVLVPTTLLAQQHY 667

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                       + V +++     +  +  +  +A G+  I++GTH L    +++  L L+
Sbjct: 668  HSFCDRFAGWDVKVAVVSRFNSASQNKAIMADLASGKIDILVGTHKLLSPDVKFADLGLL 727

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L    T   +L +TATPIPRTL +   G  D+S I   PA R  I
Sbjct: 728  IIDEEHRFGVKQKETLKALRTEVDILTLTATPIPRTLNMALGGMRDLSVIATPPAKRLSI 787

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            KT +   N    + E +      G + Y++  +++  +        E    L        
Sbjct: 788  KTFVREHN-TSMIKEAILRETLRGGQVYYLHNEVKTIE--------ETARKLQAMVPDLK 838

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A+ HG+  + + E +M  F +    +L+ TT+IE GIDV +A+ II++ A+  GLAQLH
Sbjct: 839  VAVAHGQQHETELERIMSDFYHQRFHILVCTTIIETGIDVPNANTIIMDRADRLGLAQLH 898

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR    +   LL  P   L+K++  RL  ++   D   G+L+A +DL+ R  GE
Sbjct: 899  QLRGRVGRSHHQAYAYLLCPPRSGLTKDAEKRLEAIEAAGDLGAGYLLATQDLEIRGAGE 958

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            +LG  QSG    +     L   +LE A    K    + P++ +   Q   + L+
Sbjct: 959  LLGDDQSGQIHSVGFSLYL--KMLERAVAALKR--GELPNVDTPLEQGSEVNLH 1008


>gi|315165851|gb|EFU09868.1| transcription-repair coupling factor [Enterococcus faecalis TX1302]
          Length = 1189

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 818  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 870  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 929

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 930  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 990  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1022


>gi|315145387|gb|EFT89403.1| transcription-repair coupling factor [Enterococcus faecalis TX2141]
          Length = 1189

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 818  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 870  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 929

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 930  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 990  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1022


>gi|195977163|ref|YP_002122407.1| transcription-repair coupling factor [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195973868|gb|ACG61394.1| transcription-repair coupling factor [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 1164

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 237/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    +      E +A  +  L    +  ++ G   + + ++ +    +  F  
Sbjct: 555 KLNDGRFQKAKQRVKKQVEDIADDLLKLYA--ERSQQKGFQFSPDDELQKAFEEDFAFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +IK++ +DM     M R+L GDVG GKT VA+ A   A+    Q  I+ P  +L
Sbjct: 613 TDDQLRSIKEVKKDMESVRPMDRLLVGDVGFGKTEVAMRAAFKAIGDHKQVAILVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  ++  +N  + +++++    +  + ++LER+  GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYENFRERFENYPVEIDVLSRFRSKKEQAESLERLKKGQVDIIIGTHRLLSKDVIFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + +++  +++           ++   L E 
Sbjct: 793 NRYPVQTYVLE-NNPGLIREAIIREMDRGGQVFYVYNKVDTID--------KKVAELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MSDI  E+ +  F NG   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 844 VPEASIGFVHGQMSDIQLENTLMDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYKPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG    +     ++  LLE A
Sbjct: 964 RGAGNILGASQSGFIDSVGFD--MYSQLLEQA 993


>gi|327542005|gb|EGF28505.1| Transcription-repair-coupling factor [Rhodopirellula baltica WH47]
          Length = 1140

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 139/467 (29%), Positives = 243/467 (52%), Gaps = 20/467 (4%)

Query: 218  FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
              WT+  +   A    +A ++  L  ++  +  +GIP++ + +  ++   + P+  T  Q
Sbjct: 551  ISWTNQKKAAEAAVTDMADELLELQAKRATR--LGIPMSPDNEWQRQFDASFPYLETPDQ 608

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             SAI+ +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LA+QH
Sbjct: 609  LSAIEALKIDMEAPRPMDRLICGDVGFGKTEVAMRAAFKAVSSGYQVAVLVPTTVLAEQH 668

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y+  ++      + +  ++     A +R+ ++ I  G+A I+IGTH +    +++  L L
Sbjct: 669  YQSFRERMAEFPVEIRKLSRFCTPAEQRETVKEIRRGKADIVIGTHRVASKDVEFNNLGL 728

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            V++DE+ RFGV  + +L  + +   VL ++ATPIPRTL +  +G  DIS +   PA R  
Sbjct: 729  VVIDEEQRFGVAVKERLKTRHSNVDVLTLSATPIPRTLHMALVGVRDISNLETPPAERMA 788

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            ++T +   +    +   +   L+ G + Y++  +I      +   +  R  ++       
Sbjct: 789  VETKVTRWDD-KMLRSAIVRELNRGGQMYFVHNRI-----GDMDDLAARIKAIVPEL--R 840

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I I HG+M +   E +M  F +    +L+ATT+IE G+D+ +A+ + I++   +GL+ LH
Sbjct: 841  IGIGHGQMEEGALEQIMVDFIDHKFDMLLATTIIESGLDIPNANTMFIDDGNRYGLSDLH 900

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGE 632
            QLRGRVGR +  + C LL  P   L+  +  RL  ++       GF I+  DL+ R  G 
Sbjct: 901  QLRGRVGRYKHQAYCYLLVSPNKRLTPEASKRLRAIEEYSQMGAGFAISMRDLEIRGAGN 960

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI---LTQDPDLTSV 676
            +LG +QSG         E++  LLE A + A+ +   L+ D D+   
Sbjct: 961  LLGSQQSGHI--AAVGYEMYCQLLEDAVRQAQKLPPKLSADVDIDLP 1005


>gi|218231044|ref|YP_002364903.1| transcription-repair coupling factor [Bacillus cereus B4264]
 gi|218159001|gb|ACK58993.1| transcription-repair coupling factor [Bacillus cereus B4264]
          Length = 1176

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 141/467 (30%), Positives = 239/467 (51%), Gaps = 23/467 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALIREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD------AKHILTQDPDLT 674
            LG +Q G    +     L+  +L+ A +       A++I+  + DL 
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIEQRRGTDGAENIVNVEIDLE 1026


>gi|229550502|ref|ZP_04439227.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
            29200]
 gi|307286964|ref|ZP_07567039.1| transcription-repair coupling factor [Enterococcus faecalis TX0109]
 gi|307290197|ref|ZP_07570115.1| transcription-repair coupling factor [Enterococcus faecalis TX0411]
 gi|229304359|gb|EEN70355.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
            29200]
 gi|306498753|gb|EFM68252.1| transcription-repair coupling factor [Enterococcus faecalis TX0411]
 gi|306501910|gb|EFM71199.1| transcription-repair coupling factor [Enterococcus faecalis TX0109]
 gi|315028825|gb|EFT40757.1| transcription-repair coupling factor [Enterococcus faecalis TX4000]
 gi|315168150|gb|EFU12167.1| transcription-repair coupling factor [Enterococcus faecalis TX1341]
 gi|315171410|gb|EFU15427.1| transcription-repair coupling factor [Enterococcus faecalis TX1342]
          Length = 1189

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 818  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 870  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 929

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 930  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 990  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1022


>gi|306992283|gb|ADN19258.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 166/455 (36%), Positives = 266/455 (58%), Gaps = 8/455 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + + ++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKRRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
            F NG   +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATVMIVENAER 450


>gi|29374898|ref|NP_814051.1| transcription-repair coupling factor [Enterococcus faecalis V583]
 gi|227555903|ref|ZP_03985950.1| transcription-repair coupling factor [Enterococcus faecalis HH22]
 gi|29342356|gb|AAO80122.1| transcription-repair coupling factor [Enterococcus faecalis V583]
 gi|227174960|gb|EEI55932.1| transcription-repair coupling factor [Enterococcus faecalis HH22]
 gi|315573564|gb|EFU85755.1| transcription-repair coupling factor [Enterococcus faecalis TX0309B]
 gi|315582088|gb|EFU94279.1| transcription-repair coupling factor [Enterococcus faecalis TX0309A]
          Length = 1189

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 818  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 870  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 929

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 930  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 990  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1022


>gi|317120949|ref|YP_004100952.1| transcription-repair coupling factor [Thermaerobacter marianensis DSM
            12885]
 gi|315590929|gb|ADU50225.1| transcription-repair coupling factor [Thermaerobacter marianensis DSM
            12885]
          Length = 1219

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/462 (31%), Positives = 234/462 (50%), Gaps = 19/462 (4%)

Query: 210  HNPRKAK--DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
            H PR AK    EW    +        LAG++  L   +Q     G     +    ++   
Sbjct: 576  HQPRLAKLGSGEWNKVKQRVKESVRELAGELLALYAARQ--TLRGHAFGPDTPWQRQFED 633

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
              P+  T  Q  AI  I  DM +   M R+L GDVG GKT VA+ A   AV+ G Q  ++
Sbjct: 634  AFPYQETPDQLEAIAAIKADMERPVPMDRLLVGDVGFGKTEVAMRAAFKAVQDGKQVAVL 693

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +LA QH    K+      + +  ++     A + + L  +A G   I+IGTH L Q
Sbjct: 694  VPTTVLAYQHERTFKERFAPFPVTIRTLSRFASPAEQAEILTGLAQGTIDIVIGTHRLVQ 753

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              +++  L L+I+DE+HRFGV  + +L Q      VL ++ATPIPRTL +   G  D+S+
Sbjct: 754  PDVRFKDLGLLIIDEEHRFGVAHKERLKQLKQNVDVLTLSATPIPRTLHMALAGIRDLSR 813

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
            I   P  R P++T ++  +    V + ++  L  G + +++  +++  +      V  R 
Sbjct: 814  IDTPPENRFPVQTFVVEWHE-SLVRDAIQRELRRGGQVFYVHNRVQSIQA-----VRRRL 867

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              L     +  A+ HG+M + + E VM  F  G   +L+ TT+IE G+D+ + + +I+E+
Sbjct: 868  ERLVPE--ARFAVAHGQMGEGELERVMVDFMAGKADVLVCTTIIESGLDMPNVNTLIVED 925

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
            A+ FGLAQL+QLRGRVGR + ++     Y     L++++  RL  +K+  +   GF +A 
Sbjct: 926  ADRFGLAQLYQLRGRVGRSDRVAYAYFTYRRDKVLTEDAQKRLQAIKDFTELGAGFKLAL 985

Query: 623  EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             DL+ R  G +LG +Q G    L    +L+  LLE A  + +
Sbjct: 986  RDLEIRGAGNLLGAEQHGFM--LSVGFDLYAQLLEEAVAELR 1025


>gi|326790211|ref|YP_004308032.1| transcription-repair coupling factor [Clostridium lentocellum DSM
            5427]
 gi|326540975|gb|ADZ82834.1| transcription-repair coupling factor [Clostridium lentocellum DSM
            5427]
          Length = 1179

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 144/446 (32%), Positives = 232/446 (52%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     + +A ++  L    Q +   G     +    ++     P+  T  Q 
Sbjct: 583  EWKKSKAKVKGAIQNIAKELVKLY--SQRQYSRGFCYEEDTIWQKEFEAMFPYEETGDQL 640

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+D+ +DM     M R++ GDVG GKT VA+ A   AV+   Q   + P  ILAQQHY
Sbjct: 641  EAIEDVKKDMESDKIMDRLICGDVGYGKTEVAIRAAFKAVQNSKQVAYLVPTTILAQQHY 700

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +   +  I +E+++        +K+LE +A G+  II+GTH L    +Q+  L LV
Sbjct: 701  QRFAERMADYPITIELLSRFRTPKQIKKSLEGLASGKVDIIVGTHRLLSKDVQFKDLGLV 760

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + KL Q  T   V+ +TATPIPRTL ++ +G  D+S + E P  RKP+
Sbjct: 761  IIDEEQRFGVTHKEKLKQLRTQVDVMNLTATPIPRTLHMSLIGIRDMSVLEEAPVERKPV 820

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T +I  +  D + + +   L+ G + Y++  Q+++ +E            L     + +
Sbjct: 821  QTYVIEYSE-DFIKDAINRELTRGGQVYFLHNQVKDIEEKAHA-----IQELIPK--ARV 872

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+ + E +M  F  G   +L+ TT+IE G+D+ +A+ II+ +A+  GL+QL+Q
Sbjct: 873  AFAHGQMSERELEQIMLRFIEGEIDVLVCTTIIETGLDISNANTIIMNHADRMGLSQLYQ 932

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR   +    L+Y     L + +  RL  +K   +   GF IA  DL+ R  G +
Sbjct: 933  LRGRVGRSSRMGYAYLMYQKDKVLKEVAEKRLQAIKQFTELGAGFKIAMRDLEIRGAGNL 992

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G  + +     L+  +L   
Sbjct: 993  LGAQQHGHMESIGYD--LYCKMLAEV 1016


>gi|293382707|ref|ZP_06628632.1| transcription-repair coupling factor [Enterococcus faecalis R712]
 gi|293388111|ref|ZP_06632638.1| transcription-repair coupling factor [Enterococcus faecalis S613]
 gi|307268510|ref|ZP_07549885.1| transcription-repair coupling factor [Enterococcus faecalis TX4248]
 gi|312908603|ref|ZP_07767545.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
            512]
 gi|312909249|ref|ZP_07768106.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
            516]
 gi|291079867|gb|EFE17231.1| transcription-repair coupling factor [Enterococcus faecalis R712]
 gi|291082487|gb|EFE19450.1| transcription-repair coupling factor [Enterococcus faecalis S613]
 gi|306515171|gb|EFM83711.1| transcription-repair coupling factor [Enterococcus faecalis TX4248]
 gi|310625390|gb|EFQ08673.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
            512]
 gi|311290491|gb|EFQ69047.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
            516]
 gi|315032977|gb|EFT44909.1| transcription-repair coupling factor [Enterococcus faecalis TX0017]
 gi|315036610|gb|EFT48542.1| transcription-repair coupling factor [Enterococcus faecalis TX0027]
 gi|315147120|gb|EFT91136.1| transcription-repair coupling factor [Enterococcus faecalis TX4244]
          Length = 1189

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 818  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 870  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 929

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 930  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 990  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1022


>gi|229077333|ref|ZP_04210009.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-2]
 gi|228705971|gb|EEL58283.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-2]
          Length = 968

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 141/467 (30%), Positives = 239/467 (51%), Gaps = 23/467 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 364 DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 421

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 422 RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 481

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 482 ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 541

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 542 IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 601

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 602 QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 653

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 654 TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 713

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 714 LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 773

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD------AKHILTQDPDLT 674
           LG +Q G    +     L+  +L+ A +       A++I+  + DL 
Sbjct: 774 LGAEQHGFIDSVGFD--LYSQMLKDAIEQRRGTDGAENIVNVEIDLE 818


>gi|149926139|ref|ZP_01914401.1| Transcription-repair coupling factor [Limnobacter sp. MED105]
 gi|149824957|gb|EDM84169.1| Transcription-repair coupling factor [Limnobacter sp. MED105]
          Length = 1188

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 155/474 (32%), Positives = 243/474 (51%), Gaps = 21/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++        A ++  L  R+  +K     +++     +  +    F  T  Q 
Sbjct: 595  QWEKAKKKAAKMVRDTAAELLNLYARRALRKGHEFKLSI--GDYEAFVEKFGFEETADQA 652

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ ++ DM+    M R++ GDVG GKT VAL A   +V  G Q V++AP  +LA+QH+
Sbjct: 653  AAIRAVIADMTSPRPMDRLVCGDVGFGKTEVALRAAFVSVMDGKQVVLLAPTTLLAEQHF 712

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + V  ++        R A+E I  G+A IIIGTH +    +++ +L LV
Sbjct: 713  QTFSDRFSDWPVKVVELSRFKSPKEIRDAVELINSGRADIIIGTHKVLSSEVEFSRLGLV 772

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I   P  R  I
Sbjct: 773  IIDEEHRFGVRQKEALKNLRAEVDVLTLTATPIPRTLAMSMEGIRDFSVIATAPQRRLSI 832

Query: 459  KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            KT +      D VI E +   L  G + Y++  +++  +     +  E    +     + 
Sbjct: 833  KTFV--RRETDSVIREAVLRELKRGGQVYYLHNEVDTIE-----NRREALEKILPE--AR 883

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I I HG+M++ D E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLH
Sbjct: 884  IGIAHGQMNERDLERVMRDFYQQRFNVLLCTTIIETGIDVPTANTIVIHRADKFGLAQLH 943

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGE 632
            QLRGRVGR    +   ++ +    LSKN+  RL     +++   GF +A  DL+ R  GE
Sbjct: 944  QLRGRVGRSHHQAYAYMMVNNEEGLSKNAERRLEAITMMEDLGSGFYLAMHDLEIRGAGE 1003

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            +LG  QSG    +  Q  ++  +L  A +  +    ++PDLT+    ++ I L+
Sbjct: 1004 VLGANQSGNVHEVGFQ--MYTDMLNHAVRSLRA--GKEPDLTAPLNATVEINLH 1053


>gi|315026785|gb|EFT38717.1| transcription-repair coupling factor [Enterococcus faecalis TX2137]
          Length = 1189

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 818  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 870  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 929

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 930  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 990  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1022


>gi|15896463|ref|NP_349812.1| transcription-repair coupling factor [Clostridium acetobutylicum ATCC
            824]
 gi|15026288|gb|AAK81152.1|AE007817_6 Transcription-repair coupling factor, MFD (superfamily II helicase )
            [Clostridium acetobutylicum ATCC 824]
 gi|325510621|gb|ADZ22257.1| Transcription-repair coupling factor, MFD (superfamily II helicase )
            [Clostridium acetobutylicum EA 2018]
          Length = 1171

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 143/458 (31%), Positives = 225/458 (49%), Gaps = 17/458 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT    +       +A ++  L          G   + +    ++     P++ T+ Q 
Sbjct: 574  EWTKAKNKVRKSINEIAEELVKLYA--VRTTVNGFKYSKDTVWQKQFEEEFPYNETQDQL 631

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI +I  DM     M R++ GDVG GKT VA+ A    V  G Q   + P  ILA+QHY
Sbjct: 632  LAIDEIKNDMESGKVMDRLICGDVGYGKTEVAIRAAFKTVMDGKQVAFLVPTTILAEQHY 691

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               KK  ++  + V++++    QA ++   + +  G   IIIGTH +    I +  L L+
Sbjct: 692  NNFKKRFKDFPVEVDMVSRFRSQAQQKATFKALKEGNIDIIIGTHRILNKEITFKDLGLL 751

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + KL +      VL ++ATPIPRTL ++  G  DIS I   P  R P+
Sbjct: 752  IIDEEQRFGVSHKEKLKKFKKNIDVLTLSATPIPRTLHMSLTGVRDISVIETPPEERYPV 811

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + + +   +    + +++  ++E  KE     +      L     + I
Sbjct: 812  QTYVVEYND-QLIRDAIMREIGRDGQVFFVYNKVESIKE-----MAANLGKLIPE--ARI 863

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            AI HG+MS+ + E VM  F  G   +L+ TT+IE GID+ + + +II NA+  GL+QL+Q
Sbjct: 864  AIAHGQMSERELEKVMIDFMEGNYDILLCTTIIETGIDIQNVNTLIIYNADKMGLSQLYQ 923

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ +  RL  +K       GF IA  DL+ R  G I
Sbjct: 924  LRGRVGRTNRMAYAYFTYKKDKILTEVAEKRLKAIKEFTQLGSGFKIAMRDLEIRGAGNI 983

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            +G  Q G    +     L+  +LE   K+ K  +  +P
Sbjct: 984  MGSAQHGHMATIGYD--LYCRMLEDTIKEIKGEIQNEP 1019


>gi|306992493|gb|ADN19363.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 445

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 168/450 (37%), Positives = 264/450 (58%), Gaps = 8/450 (1%)

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181
             + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL   
Sbjct: 1   YIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDY 60

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +  + E+ +++ L +K    I  A   I+ P+     E       R  Y EL   Q+AL 
Sbjct: 61  VQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQAKH---RFKYQELFLLQMALF 117

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++QGD
Sbjct: 118 LVKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGD 175

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  
Sbjct: 176 VGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISP 235

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LTQK   P
Sbjct: 236 SNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQKGENP 295

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +
Sbjct: 296 DVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKK 355

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKN 539
           G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F N
Sbjct: 356 GRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVN 415

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           G   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 GKIDILVSTTVIEVGVNVPNATVMIVENAE 445


>gi|315158594|gb|EFU02611.1| transcription-repair coupling factor [Enterococcus faecalis TX0312]
          Length = 1189

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 818  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 870  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 929

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 930  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 990  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1022


>gi|229546913|ref|ZP_04435638.1| transcription-repair coupling factor [Enterococcus faecalis TX1322]
 gi|312952657|ref|ZP_07771521.1| transcription-repair coupling factor [Enterococcus faecalis TX0102]
 gi|229307841|gb|EEN73828.1| transcription-repair coupling factor [Enterococcus faecalis TX1322]
 gi|310629445|gb|EFQ12728.1| transcription-repair coupling factor [Enterococcus faecalis TX0102]
 gi|315153559|gb|EFT97575.1| transcription-repair coupling factor [Enterococcus faecalis TX0031]
 gi|315156261|gb|EFU00278.1| transcription-repair coupling factor [Enterococcus faecalis TX0043]
          Length = 1189

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 818  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 870  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 929

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 930  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 990  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1022


>gi|227520043|ref|ZP_03950092.1| transcription-repair coupling factor [Enterococcus faecalis TX0104]
 gi|227072591|gb|EEI10554.1| transcription-repair coupling factor [Enterococcus faecalis TX0104]
          Length = 1189

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 818  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 870  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 929

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 930  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 990  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1022


>gi|225619936|ref|YP_002721193.1| transcription-repair coupling factor [Brachyspira hyodysenteriae WA1]
 gi|225214755|gb|ACN83489.1| transcription-repair coupling factor [Brachyspira hyodysenteriae WA1]
          Length = 1247

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 227/458 (49%), Gaps = 23/458 (5%)

Query: 220  WTSPARERLAYDELLAGQIALLLM-RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            W     +        A ++  L   R   +  +  P   + +       +  +  T  Q 
Sbjct: 592  WDKIKSKAREDALATARELIKLYAIRSNIRGNVYGP---DTQWQDDFEASFRYEETVDQL 648

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI DI +DM     M R++ GDVG GKT VA  A+  A+ AG Q  I+ P  IL+QQHY
Sbjct: 649  RAINDIKEDMESGKMMDRLVCGDVGFGKTEVAFRAVFKAIMAGKQCAILCPTTILSQQHY 708

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               KK  ++  I +E++   +     ++  E +  G   +I+GTH L    I++  L L+
Sbjct: 709  NNAKKRFEDFPIKIEVLNRFVTSKQAKRNKELLKEGSCDLIVGTHMLLSKDIEFKNLGLI 768

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ +  L +      VL ++ATPIPRTL +   G  DIS I   P  R P+
Sbjct: 769  VIDEEQRFGVKHKEALKKLRLETDVLTLSATPIPRTLNMALTGIRDISIIETPPLNRIPV 828

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--S 516
            KT +   +  D V+  ++  L    + +++  +I+           E F  + +     +
Sbjct: 829  KTFVTEFSE-DAVVNAIERELKREGQVFYLYNRIDTI---------ESFALMIKKLCPKA 878

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             I + HGRM+    E +M  F N    +L++TT+IE GID+ +A+ I+I+NA   GL++L
Sbjct: 879  RICVAHGRMTGHQLEKIMGDFINHKYDILVSTTIIENGIDIPNANTILIDNANKLGLSEL 938

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            +QLRGRVGR +  +   + Y     L++ +Y RL  +    D   GF IA  DL+ R  G
Sbjct: 939  YQLRGRVGRSDREAYAYMFYPSDLALTEVAYKRLEAISEHTDLGAGFKIAMRDLEIRGAG 998

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
             ILG +QSGM        EL+  +LE A  + K  + +
Sbjct: 999  NILGKEQSGMI--YQVGYELYTQMLEEAANEYKGEIKE 1034


>gi|121998047|ref|YP_001002834.1| transcription-repair coupling factor [Halorhodospira halophila SL1]
 gi|121589452|gb|ABM62032.1| transcription-repair coupling factor [Halorhodospira halophila SL1]
          Length = 1147

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 156/457 (34%), Positives = 236/457 (51%), Gaps = 21/457 (4%)

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  L  R+Q +         + +  +      PF  T  Q++AI+ +L D+     M R
Sbjct: 564  ELLDLYARRQARAGD--ACLFDDEAYEAFASAFPFEETPDQQAAIQAVLDDLRSDQPMDR 621

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VA+ A  A V+AG Q  ++ P  +LAQQHY+       +  + +E ++
Sbjct: 622  VVCGDVGFGKTEVAMRAAFAGVQAGRQVAMLVPTTLLAQQHYQNFADRFADWPVRIESLS 681

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                +    K L RIA G+A ++IGTH L    +Q+  L LVI+DE+ RFGV+Q+ +L +
Sbjct: 682  RFTGKKGNEKTLARIASGEADVVIGTHKLLGSEVQFKNLGLVIIDEEQRFGVRQKERLKR 741

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                  VL +TATPIPRTL ++  G  D+S I   P  R  +KT +   +    + E  +
Sbjct: 742  LRAEVDVLTLTATPIPRTLNMSMAGIRDLSVIATPPERRLAVKTFVQEWSD-GLIREACQ 800

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMD 535
              L  G + Y++   +        +S+    N L +    + I + HG+M + + E VM 
Sbjct: 801  RELQRGGQVYFLYNDV--------KSIERTANQLRDLMPEARIGVAHGQMRERELEQVML 852

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             F +    +L+ TT+IE GID+  A+ III  A+ FGLAQLHQLRGRVGR    +   LL
Sbjct: 853  DFYHQRFDILVCTTIIESGIDIPTANTIIIHRADRFGLAQLHQLRGRVGRSHHRAYAYLL 912

Query: 596  YHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
              PP  ++ ++  RL  +   ED   GF +A  DL+ R  GE+LG +QSG          
Sbjct: 913  APPPNAMTADALKRLEAISQLEDLGVGFALASHDLEIRGAGELLGDEQSGQI--QEVGFT 970

Query: 651  LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            L+  LLE A KD K    +DP   +     + + L L
Sbjct: 971  LYSQLLERAVKDLKA--GRDPAPEAELDTGVEVDLRL 1005


>gi|307274221|ref|ZP_07555429.1| transcription-repair coupling factor [Enterococcus faecalis TX0855]
 gi|306509183|gb|EFM78245.1| transcription-repair coupling factor [Enterococcus faecalis TX0855]
 gi|315151127|gb|EFT95143.1| transcription-repair coupling factor [Enterococcus faecalis TX0012]
          Length = 1189

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 818  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 870  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 929

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 930  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 990  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1022


>gi|225387033|ref|ZP_03756797.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme DSM
            15981]
 gi|225046851|gb|EEG57097.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme DSM
            15981]
          Length = 1221

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 140/446 (31%), Positives = 226/446 (50%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW+          + +A  +  L   +Q K   G     +    ++     P+  T  Q 
Sbjct: 621  EWSKTKSRVKGAVQEIAKDLVKLYAARQEK--AGFQYGKDTVWQREFEELFPYDETDDQL 678

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  +  DM  +  M R++ GDVG GKT VAL A   AV+   Q V + P  ILAQQHY
Sbjct: 679  DAIDSVKHDMESRKIMDRLVCGDVGYGKTEVALRAAFKAVQDSKQVVYLVPTTILAQQHY 738

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  ++  + V++++     + ++K LE +  G   I+IGTH +    +++  L L+
Sbjct: 739  NTFVQRMKDFPVRVDMLSRFCTPSQQKKTLEDLRKGMVDIVIGTHRVLSKDMKFRDLGLL 798

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q      VL +TATPIPRTL ++  G  D+S + E P  R PI
Sbjct: 799  IVDEEQRFGVAHKEKIKQMKENVDVLTLTATPIPRTLHMSLAGIRDMSVLEEPPVDRTPI 858

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E +   LS G + Y++  ++ +  E        R  +L     + +
Sbjct: 859  QTYVMEYNE-EMIREAINRELSRGGQVYYVYNRVTDIDEVAN-----RVAALVPE--AVV 910

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M + + E +M  F NG   +L++TT+IE G+D+ +A+ +I+ +A+  GL+QL+Q
Sbjct: 911  TFAHGQMREHELERIMADFINGEIDVLVSTTIIETGLDIPNANTMIVHDADRMGLSQLYQ 970

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    S   L+Y     L + +  RL  ++       G  IA  DL+ R  G +
Sbjct: 971  LRGRVGRSNRTSYAFLMYKRDKLLKEEAEKRLQAIREFTELGSGIKIAMRDLEIRGAGNV 1030

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G  + +     L+  +L  A
Sbjct: 1031 LGAEQHGHMEAVGYD--LYCKMLNEA 1054


>gi|227824817|ref|ZP_03989649.1| transcription-repair coupling factor [Acidaminococcus sp. D21]
 gi|226905316|gb|EEH91234.1| transcription-repair coupling factor [Acidaminococcus sp. D21]
          Length = 1093

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 147/430 (34%), Positives = 223/430 (51%), Gaps = 15/430 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  Q K   G     +    ++     PF  T  Q  AI++I  DM +   M R+L G
Sbjct: 521 LRLYAQRKITPGHAFAPDTPWQKEFEDRFPFEETPDQLKAIQEIKADMEKPVPMERLLCG 580

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VA+ A   AV  G Q  +MAP  +LAQQH    +       + +E+++    
Sbjct: 581 DVGYGKTEVAIRAAFKAVMDGKQVAVMAPTTVLAQQHLITFQNRMDAFGVRIEMLSRFRS 640

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           +  ++  L+++A G   I+IGTH L Q  + +  L L+I+DE+ RFGV Q+ K+ Q ++ 
Sbjct: 641 RKEQKDTLDKLAKGDLDIVIGTHRLIQPDVHFKDLGLLIIDEEQRFGVAQKEKIKQWSSG 700

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL ++ATPIPRTL L  +   D+S I   P  R P++T +   +    V E ++  + 
Sbjct: 701 IDVLTLSATPIPRTLHLALVKGRDMSVIESPPEDRLPVETYVAEYDD-GMVKEAIEREIR 759

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + Y++  +IE            R   +      SI + HGRM++ + E VM  F  G
Sbjct: 760 RGGRIYYVHNRIEALDRIAH-----RLREMIPGL--SIGVAHGRMTEDELEEVMVGFYQG 812

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
              +L++TT+IE G+DV  A+ III+ AE+FGL+QL+Q+RGRVGR   ++    LY    
Sbjct: 813 DYDVLLSTTIIENGLDVPLANTIIIDGAENFGLSQLYQMRGRVGRSSRLAYAYFLYKKDK 872

Query: 600 -LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
            LS+ S  RL  +++  +   GF IA  DL+ R  G +LG +Q G          L+  L
Sbjct: 873 ALSEVSQKRLQAIRDFTELGAGFKIAMRDLEIRGAGNLLGAEQHGQI--AGVGFALYCRL 930

Query: 656 LEIARKDAKH 665
           LE   K  + 
Sbjct: 931 LEDTIKALQE 940


>gi|222152152|ref|YP_002561312.1| transcription-repair coupling factor [Macrococcus caseolyticus
            JCSC5402]
 gi|222121281|dbj|BAH18616.1| transcription-repair coupling factor [Macrococcus caseolyticus
            JCSC5402]
          Length = 1166

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 149/464 (32%), Positives = 238/464 (51%), Gaps = 21/464 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW           E +A ++  L + ++ ++  G     + +  +    + P+ PT  Q+
Sbjct: 567  EWKKTKARVQKNVEDIAEEL--LKLYQERERIEGYQFGPDTEEQENFEMDFPYEPTHDQK 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             ++ +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  QSLIEIKGDMEKSKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I +  Q+  + V++++         +  + +  G   I++GTH L    I Y  L L+
Sbjct: 685  ETIIERMQDYPVEVQMMSRFRTTKEVNETKKGLKSGFVDIVVGTHKLLGKDIVYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+    T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVTHKEKIKALKTNVDVLTLTATPIPRTLHMSLLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            +T ++   + + + E ++  LS   + +++  ++            ++   L      + 
Sbjct: 805  QTYVLEY-QHNFIKEAMERELSRNGQVFYLYNRVATI--------YQKAEQLEMMMPDAR 855

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IA+ HG+MS+ + E  M  F NG   +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+
Sbjct: 856  IAVAHGQMSERELEETMLGFINGEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLY 915

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   IS    L+ P   L++ +  RL  +K       GF IA  DL  R  G 
Sbjct: 916  QLRGRVGRSNRISYAYFLHAPNKVLTEVAEQRLQAIKEFTELGSGFKIAMRDLNIRGAGN 975

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD--PDLT 674
            +LG +Q G    +     L+  +L+ A  + + I  ++  P L 
Sbjct: 976  LLGKQQHGFIDSVGYD--LYSEMLQQAVNEKRGIKEEETVPQLE 1017


>gi|257078484|ref|ZP_05572845.1| transcription-repair coupling factor [Enterococcus faecalis JH1]
 gi|256986514|gb|EEU73816.1| transcription-repair coupling factor [Enterococcus faecalis JH1]
          Length = 1179

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 808  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 980  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1012


>gi|255974757|ref|ZP_05425343.1| transcription-repair coupling factor [Enterococcus faecalis T2]
 gi|255967629|gb|EET98251.1| transcription-repair coupling factor [Enterococcus faecalis T2]
          Length = 1179

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 808  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 980  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1012


>gi|307276446|ref|ZP_07557569.1| transcription-repair coupling factor [Enterococcus faecalis TX2134]
 gi|306506926|gb|EFM76073.1| transcription-repair coupling factor [Enterococcus faecalis TX2134]
          Length = 1189

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 818  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 870  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 929

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 930  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 990  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1022


>gi|71907594|ref|YP_285181.1| transcription-repair coupling factor [Dechloromonas aromatica RCB]
 gi|71847215|gb|AAZ46711.1| transcription-repair coupling factor [Dechloromonas aromatica RCB]
          Length = 1147

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 149/479 (31%), Positives = 224/479 (46%), Gaps = 18/479 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +W    R         A ++  L   +  ++      + +    +       F 
Sbjct: 540  HTLGSGQWEKAKRRAAEQARDTAAELLTLYAARAARQG--HAFSFQENDYEAFADGFGFE 597

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q  AI  +++DM     M R++ GDVG GKT VAL A   AV  G Q  ++ P  +
Sbjct: 598  ETHDQAQAIAAVIEDMRSGKPMDRLVCGDVGFGKTEVALRAAFCAVAGGKQVAVLCPTTL 657

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            L +QHY+       +  + +  I+         +AL+ +A G+  +IIGTH L    +++
Sbjct: 658  LCEQHYQTFVDRFADWPVKIAEISRFKTAKESAQALQELAEGKIDVIIGTHKLIGKDVKF 717

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +L LV++DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I   P
Sbjct: 718  QRLGLVVIDEEHRFGVRQKETLKAMRAEVDVLTLTATPIPRTLAMSMEGLRDFSVIATAP 777

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  IKT +   +    + E +   L  G + Y++  +++  +     ++ E+   L  
Sbjct: 778  QKRLAIKTFVSKFSD-GIIREAVLRELKRGGQVYFLHNEVDTIE-----NMREKLEKLVP 831

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I I HG+M++ + E VM  F      LL+ TT+IE GID   A+ I+I  +E FG
Sbjct: 832  E--ARIVIGHGQMNERELERVMRDFTQQRANLLLCTTIIETGIDNPHANTILINRSEKFG 889

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL---KNTEDGFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL      ++K +  RL  +   +    GF +A  DL+ 
Sbjct: 890  LAQLHQLRGRVGRSHHQAYAYLLVQDEKAMTKQAKQRLEAIQMSEELGSGFFLAMHDLEI 949

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD-PDLTSVRGQSIRILL 685
            R  GE+LG  QSG  +       L   +L  A    K     D  DLT   G S  I L
Sbjct: 950  RGAGEVLGDNQSG--EMQEVGFNLFTEMLNRAVAHLKQGKAIDTVDLTQPLGISTEINL 1006


>gi|327534054|gb|AEA92888.1| transcription-repair coupling factor [Enterococcus faecalis OG1RF]
          Length = 1189

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 818  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 870  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 929

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 930  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 990  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1022


>gi|257418651|ref|ZP_05595645.1| transcription-repair coupling factor [Enterococcus faecalis T11]
 gi|257160479|gb|EEU90439.1| transcription-repair coupling factor [Enterococcus faecalis T11]
          Length = 1179

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 808  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 980  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1012


>gi|32474124|ref|NP_867118.1| transcription-repair coupling factor [Rhodopirellula baltica SH 1]
 gi|32444661|emb|CAD74663.1| transcription-repair coupling factor [Rhodopirellula baltica SH 1]
          Length = 1181

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 140/467 (29%), Positives = 243/467 (52%), Gaps = 20/467 (4%)

Query: 218  FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
              WT+  +   A    +A ++  L  ++  +  +GIP++ + +  ++   + P+  T  Q
Sbjct: 592  ISWTNQKKAAEAAVTDMADELLELQAKRATR--LGIPMSPDNEWQRQFDASFPYLETPDQ 649

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             SAI+ +  DM     M R++ GDVG GKT VA+ A   AV +G Q  ++ P  +LA+QH
Sbjct: 650  LSAIEALKIDMEAPRPMDRLICGDVGFGKTEVAMRAAFKAVSSGYQVAVLVPTTVLAEQH 709

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y+  ++      + +  ++     A +R+ ++ I  G+A I+IGTH +    +++  L L
Sbjct: 710  YQSFRERMAEFPVEIRKLSRFCTPAEQRETVKEIRRGKADIVIGTHRVASKDVEFNNLGL 769

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            V++DE+ RFGV  + +L  + +   VL ++ATPIPRTL +  +G  DIS +   PA R  
Sbjct: 770  VVIDEEQRFGVAVKERLKTQHSNVDVLTLSATPIPRTLHMALVGVRDISNLETPPAERMA 829

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            ++T +   +    +   +   L+ G + Y++  +I      +   +  R  ++       
Sbjct: 830  VETKVTRWDD-KMLRSAIVRELNRGGQMYFVHNRI-----GDMDDLAARIKAIVPEL--R 881

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I I HG+M +   E VM  F +    +L+ATT+IE G+D+ +A+ + I++   +GL+ LH
Sbjct: 882  IGIGHGQMEEGALEQVMVDFIDHKFDMLLATTIIESGLDIPNANTMFIDDGNRYGLSDLH 941

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGE 632
            QLRGRVGR +  + C LL  P   L+  +  RL  ++       GF I+  DL+ R  G 
Sbjct: 942  QLRGRVGRYKHQAYCYLLVSPNKRLTPEASKRLRAIEEYSQMGAGFAISMRDLEIRGAGN 1001

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI---LTQDPDLTSV 676
            +LG +QSG         E++  LLE A + A+ +   L+ D D+   
Sbjct: 1002 LLGSQQSGHI--AAVGYEMYCQLLEDAVRQAQKLPPKLSADVDIDLP 1046


>gi|315172643|gb|EFU16660.1| transcription-repair coupling factor [Enterococcus faecalis TX1346]
          Length = 1189

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 818  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 870  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 929

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 930  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 990  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1022


>gi|306992409|gb|ADN19321.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992413|gb|ADN19323.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992415|gb|ADN19324.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992417|gb|ADN19325.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 167/454 (36%), Positives = 266/454 (58%), Gaps = 8/454 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  KKI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIKKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LKDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            F N    +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 EFVNREIDILVSTTVIEVGVNVPNATVMIVENAE 449


>gi|306992185|gb|ADN19209.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 167/451 (37%), Positives = 266/451 (58%), Gaps = 8/451 (1%)

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-S 180
           +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL  
Sbjct: 2   EYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHD 61

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+AL
Sbjct: 62  YVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMAL 118

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++QG
Sbjct: 119 FLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQG 176

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++ 
Sbjct: 177 DVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSIS 236

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K   
Sbjct: 237 PSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGEN 296

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + 
Sbjct: 297 PDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVK 356

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFK 538
           +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F 
Sbjct: 357 KGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFV 416

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           NG   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 417 NGKIDILVSTTVIEVGVNVPNATVMIVENAE 447


>gi|225028227|ref|ZP_03717419.1| hypothetical protein EUBHAL_02499 [Eubacterium hallii DSM 3353]
 gi|224954539|gb|EEG35748.1| hypothetical protein EUBHAL_02499 [Eubacterium hallii DSM 3353]
          Length = 1187

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 232/447 (51%), Gaps = 19/447 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW        +  ++ A  +  L   +Q K+        +    ++     P+  T+ Q 
Sbjct: 589  EWEKTKSRVRSQVQIAAQDLVKLYAERQAKEG--YAYGKDTVWQKEFEELFPYEETEDQL 646

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI+D  +DM     M R++ GDVG GKT VA+ A   AV    Q V + P  ILAQQHY
Sbjct: 647  SAIEDTKRDMESHRIMDRLICGDVGYGKTEVAIRAAFKAVMDSKQVVYLVPTTILAQQHY 706

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+  ++  + + +++       +++  + + +G   I+IGTH +   +I+Y  L L+
Sbjct: 707  NSFKERMEHYPVEIAMLSRFCTPKEQKRIFDGLKNGTIDIVIGTHKVLSKNIKYKNLGLL 766

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+Q+ K+ Q      VL ++ATPIPRTL ++  G  D+S +   P  R+ I
Sbjct: 767  IIDEEQRFGVKQKEKIKQLKKDVDVLALSATPIPRTLHMSLAGIRDMSVLEVPPVDRRAI 826

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSS 517
            +T ++  N  + V E ++  L  G + Y++  ++         ++ E    L      ++
Sbjct: 827  QTYVMEYNE-ELVREAIERELGRGGQVYYVYNRVN--------NIDEVAAGLQRLLPNAT 877

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +   HG+M +   E++M  F N    +L++TT+IE G+D+ + + +II++A+ FGL+QL+
Sbjct: 878  VEYAHGQMGERQLETIMSGFINKEIDVLVSTTIIETGLDIPNVNTMIIQDAQLFGLSQLY 937

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR    +   L+Y     L + +  RL  ++   D   GF IA  DL+ R  G 
Sbjct: 938  QLRGRVGRSNRTAYAFLMYRRNSILKEEAEKRLKAIREFTDLGSGFKIAMRDLEIRGAGN 997

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +LG +QSG  + +     L+  +L  A
Sbjct: 998  LLGAEQSGHMESVGYD--LYCKMLNEA 1022


>gi|306992383|gb|ADN19308.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992385|gb|ADN19309.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 164/451 (36%), Positives = 264/451 (58%), Gaps = 8/451 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  KDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           F N    +L++TTVIEVG++V +A+++I+EN
Sbjct: 416 FVNREIDILVSTTVIEVGVNVPNATVMIVEN 446


>gi|312904634|ref|ZP_07763789.1| transcription-repair coupling factor [Enterococcus faecalis TX0635]
 gi|310631986|gb|EFQ15269.1| transcription-repair coupling factor [Enterococcus faecalis TX0635]
 gi|315160777|gb|EFU04794.1| transcription-repair coupling factor [Enterococcus faecalis TX0645]
 gi|315579376|gb|EFU91567.1| transcription-repair coupling factor [Enterococcus faecalis TX0630]
          Length = 1189

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 580  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 638  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 698  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 758  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 818  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 870  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 929

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 930  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 990  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1022


>gi|256855211|ref|ZP_05560572.1| transcription-repair coupling factor [Enterococcus faecalis T8]
 gi|256709724|gb|EEU24771.1| transcription-repair coupling factor [Enterococcus faecalis T8]
          Length = 1179

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 808  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 980  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1012


>gi|256956814|ref|ZP_05560985.1| transcription-repair coupling factor [Enterococcus faecalis DS5]
 gi|256960620|ref|ZP_05564791.1| transcription-repair coupling factor [Enterococcus faecalis Merz96]
 gi|257081545|ref|ZP_05575906.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol]
 gi|294779317|ref|ZP_06744720.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1]
 gi|300861968|ref|ZP_07108048.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD
            Ef11]
 gi|256947310|gb|EEU63942.1| transcription-repair coupling factor [Enterococcus faecalis DS5]
 gi|256951116|gb|EEU67748.1| transcription-repair coupling factor [Enterococcus faecalis Merz96]
 gi|256989575|gb|EEU76877.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol]
 gi|294453603|gb|EFG22002.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1]
 gi|300848493|gb|EFK76250.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD
            Ef11]
          Length = 1179

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 808  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 980  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1012


>gi|257088020|ref|ZP_05582381.1| transcription-repair coupling factor [Enterococcus faecalis D6]
 gi|256996050|gb|EEU83352.1| transcription-repair coupling factor [Enterococcus faecalis D6]
          Length = 1179

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 808  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 980  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1012


>gi|229148463|ref|ZP_04276720.1| Transcription-repair-coupling factor [Bacillus cereus m1550]
 gi|228635005|gb|EEK91577.1| Transcription-repair-coupling factor [Bacillus cereus m1550]
          Length = 1176

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 140/467 (29%), Positives = 239/467 (51%), Gaps = 23/467 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQH+
Sbjct: 630  RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHH 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALIREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD------AKHILTQDPDLT 674
            LG +Q G    +     L+  +L+ A +       A++I+  + DL 
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIEQRRGTDGAENIVNVEIDLE 1026


>gi|257417623|ref|ZP_05594617.1| transcription-repair coupling factor [Enterococcus faecalis AR01/DG]
 gi|257159451|gb|EEU89411.1| transcription-repair coupling factor [Enterococcus faecalis ARO1/DG]
          Length = 1179

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 145/455 (31%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  VIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 808  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 980  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1012


>gi|255971757|ref|ZP_05422343.1| transcription-repair coupling factor [Enterococcus faecalis T1]
 gi|257421547|ref|ZP_05598537.1| transcription-repair coupling factor [Enterococcus faecalis X98]
 gi|255962775|gb|EET95251.1| transcription-repair coupling factor [Enterococcus faecalis T1]
 gi|257163371|gb|EEU93331.1| transcription-repair coupling factor [Enterococcus faecalis X98]
 gi|323479470|gb|ADX78909.1| transcription-repair coupling factor [Enterococcus faecalis 62]
          Length = 1179

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 808  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 980  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1012


>gi|77165119|ref|YP_343644.1| transcription-repair coupling factor [Nitrosococcus oceani ATCC
            19707]
 gi|254433553|ref|ZP_05047061.1| transcription-repair coupling factor [Nitrosococcus oceani AFC27]
 gi|76883433|gb|ABA58114.1| transcription-repair coupling factor [Nitrosococcus oceani ATCC
            19707]
 gi|207089886|gb|EDZ67157.1| transcription-repair coupling factor [Nitrosococcus oceani AFC27]
          Length = 1158

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 156/479 (32%), Positives = 243/479 (50%), Gaps = 19/479 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W    R+       +A ++  L +  Q      +P+           R  PF 
Sbjct: 553  HKLGSNHWERAKRKARERVRDVAAEL--LAIYAQRAARKKLPLPTPDSHYTAFARAFPFE 610

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q  AI+ ++ D++    M R++ GDVG GKT VA+ A     +AG Q  ++ P  +
Sbjct: 611  ETPDQADAIQAVIADLTSDQPMDRLVCGDVGFGKTEVAMRATFIVSQAGKQVAVLVPTTL 670

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHY+  K    +    VE+I+    +  +   +  IA G+A I+IGTH L Q++I++
Sbjct: 671  LAQQHYQSFKDRFADWPARVEVISRFRSRKEQEAVISGIADGRADIVIGTHKLLQENIRF 730

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L LVI+DE+HRFGV+Q+ ++    T   +L +TATPIPRTL ++     D+S I   P
Sbjct: 731  KNLGLVIIDEEHRFGVRQKERMKALRTEVDILTLTATPIPRTLHMSLSNLRDLSIIATPP 790

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   N  + + E L   +  G + Y++  ++E         + +R  +L  
Sbjct: 791  ARRLAIKTFVRQWND-NLLREALLREIKRGGQVYFLHNEVESIN-----KMAQRVQTLFP 844

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + I HG+M + + E VM +F +    +LI TT+IE GID+  A+ III  A+  G
Sbjct: 845  E--AKVGIAHGQMRERELEQVMLNFYHRRFNVLICTTIIETGIDIPSANTIIIHRADKLG 902

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQL+QLRGRVGR    +   L+  P   ++ ++  RL  +++ E+   GF +A  D++ 
Sbjct: 903  LAQLYQLRGRVGRSHHRAYAYLIVPPRSVMTADAIKRLDAIESLEELGAGFTLASHDMEI 962

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE+LG  QSG  + +     L+  LLE A    K    Q  DL     Q   + L+
Sbjct: 963  RGAGELLGKDQSGQMQEIGFD--LYHDLLERAVNSLKS--GQALDLEQPPEQGSEVDLH 1017


>gi|306992401|gb|ADN19317.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992407|gb|ADN19320.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992419|gb|ADN19326.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992421|gb|ADN19327.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992423|gb|ADN19328.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 448

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 167/453 (36%), Positives = 266/453 (58%), Gaps = 8/453 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  KKI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIKKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  KDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           F N    +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 FVNREIDILVSTTVIEVGVNVPNATVMIVENAE 448


>gi|256762052|ref|ZP_05502632.1| transcription-repair coupling factor [Enterococcus faecalis T3]
 gi|256683303|gb|EEU22998.1| transcription-repair coupling factor [Enterococcus faecalis T3]
          Length = 1179

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 808  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 980  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1012


>gi|77407708|ref|ZP_00784463.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
 gi|77173707|gb|EAO76821.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
          Length = 1165

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 169/539 (31%), Positives = 267/539 (49%), Gaps = 34/539 (6%)

Query: 130 KKLKNRIIMVHPHYIFHNSQDVN-FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++LK+   +    Y+ HN   V  F  IE +     G+  D    I  +   R+ +  E 
Sbjct: 480 ERLKDYNELSVGDYVVHNVHGVGKFLGIETIE--IQGIHRDYL-TIQYQNADRISIPVEQ 536

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPR--KAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           I  +LL K       E       P+     D  +    +      E +A  +  L    +
Sbjct: 537 I--ELLTKYVSADGKE-------PKINTLNDGRFKKAKQRVAKQVEDIADDLLKLYA--E 585

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
             +  G   + +  +      +  +  T+ Q  +IK+I QDM     M R+L GDVG GK
Sbjct: 586 RSQLQGFAFSPDDNMQNDFDNDFAYVETEDQLRSIKEIKQDMEGNRPMDRLLVGDVGFGK 645

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T VA+ A   AV    Q  ++ P  +LAQQH+E  K+   N  + V++++    +  +  
Sbjct: 646 TEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHFENFKERFSNYPVTVDVLSRFRSKKEQTD 705

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            L+R++ GQ  IIIGTH L    + +  L L+++DE+ RFGV+ + KL +  T   VL +
Sbjct: 706 TLKRLSKGQVDIIIGTHRLLSQDVVFSDLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTL 765

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL ++ LG  D+S I   P  R P++T ++  N    V E +   +  G + +
Sbjct: 766 TATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETN-PGLVREAIIREIDRGGQVF 824

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++  +++  +        ++ + L E    +SI  +HG+MS+I  E+ +  F NG   +L
Sbjct: 825 YVYNKVDTIE--------QKVSELQELVPEASIGFVHGQMSEIQLENTLIDFINGDYDVL 876

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKN 603
           +ATT+IE G+D+ + + + +ENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ 
Sbjct: 877 VATTIIETGVDISNVNTLFVENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEI 936

Query: 604 SYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           S  RL  +K       GF IA  DL  R  G ILG  QSG         E++  LLE A
Sbjct: 937 SEKRLDAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFID--SVGFEMYSQLLEQA 993


>gi|320537605|ref|ZP_08037541.1| transcription-repair coupling factor [Treponema phagedenis F0421]
 gi|320145523|gb|EFW37203.1| transcription-repair coupling factor [Treponema phagedenis F0421]
          Length = 1148

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 237/448 (52%), Gaps = 19/448 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +   +     E +A ++  L  R+  K   G     + +         P+  T  Q +
Sbjct: 558 WENRKNKVKKSVEDIANKLIDLYSRR--KAARGHAFQPDDEWQLAFEAAFPYEETDDQLT 615

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            + ++  DM +   M R++ GDVG GKT VA+ A   A+  G Q   ++P  ILA+QH+E
Sbjct: 616 CVAEVKADMEKPVPMDRLVCGDVGYGKTEVAMRAAFKAIMGGKQVAFLSPTTILAEQHFE 675

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            + +  +N  + V  ++  + ++ ++K LE++ +G   I++GTH + Q  + +  L L+I
Sbjct: 676 TLDERFKNFPVTVARMSRFITRSEQKKILEQLKNGDIDILVGTHRIIQKDVVFKDLGLMI 735

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+ + +L Q  T    L ++ATPIPRTL ++ L   D+S +T  P  R+PI+
Sbjct: 736 IDEEQRFGVKDKERLKQMKTNVDCLALSATPIPRTLHMSLLKIRDMSLLTTPPQNRRPIE 795

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-I 518
           TVI   +  ++V   ++  +  G + +++  ++E           E    L        I
Sbjct: 796 TVIQEFD-PEKVAAAIRQEVERGGQVFYLHNRVETLD--------ETARMLQNLVPEVLI 846

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              HG+M+  + E +   F  G   +LIATT+IE GID+ +A+ III+ A+ +G++QL+Q
Sbjct: 847 DSAHGQMNSDELEDIFKRFNMGGFHVLIATTIIENGIDIPNANTIIIDRADMYGVSQLYQ 906

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR ++ +   LLY     LS+ +  RL V+ +      GF IA +D++ R  G +
Sbjct: 907 LRGRVGRSDKKAYAYLLYPKDRALSEIAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNL 966

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARK 661
           LG +QSG         +L+  LLE A +
Sbjct: 967 LGREQSG--DIYSVGFDLYLRLLEEAIE 992


>gi|256964180|ref|ZP_05568351.1| transcription-repair coupling factor [Enterococcus faecalis HIP11704]
 gi|256954676|gb|EEU71308.1| transcription-repair coupling factor [Enterococcus faecalis HIP11704]
          Length = 1179

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 808  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 980  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1012


>gi|262281636|ref|ZP_06059405.1| transcription-repair coupling factor [Streptococcus sp. 2_1_36FAA]
 gi|262262090|gb|EEY80787.1| transcription-repair coupling factor [Streptococcus sp. 2_1_36FAA]
          Length = 1167

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 238/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + + +   +   + P+  
Sbjct: 559 KLNDGRFQKTKQKVQHQVEDIADDLIKLYA--ERSQLEGFSFSSDDENQIEFDNDFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I++I +DM  K  M R+L GDVG GKT VA+ A   AV    Q  I+ P  +L
Sbjct: 617 TEDQLRSIQEIKKDMESKQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAILVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  + V++++    +A + + LE +  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHYTNFKERFNDFAVNVDVLSRFRTKAEQNETLEGLKKGQVDIIIGTHRLLSQDVEFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++  +        ++   L E 
Sbjct: 797 NRYPVQTYVLESNPT-IIRDAILREIDRGGQVYYLYNKVDTIE--------QKVAELKEL 847

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              ++I  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 848 IPEANIGYVHGQMSEIRLENTLIDFINGEYDVLVTTTIIETGVDIPNANTLFIENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+    +Y P   L++ +  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYFMYRPDKNLTEVAEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGSSQSGFID--SVGFEMYSQLLEEA 997


>gi|257084193|ref|ZP_05578554.1| transcription-repair coupling factor [Enterococcus faecalis Fly1]
 gi|256992223|gb|EEU79525.1| transcription-repair coupling factor [Enterococcus faecalis Fly1]
          Length = 1179

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 808  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 980  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1012


>gi|332530190|ref|ZP_08406138.1| transcription-repair coupling factor [Hylemonella gracilis ATCC
            19624]
 gi|332040382|gb|EGI76760.1| transcription-repair coupling factor [Hylemonella gracilis ATCC
            19624]
          Length = 1177

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 147/497 (29%), Positives = 231/497 (46%), Gaps = 20/497 (4%)

Query: 196  KKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            +    S     +    P  K    +W    R+        A ++  +  R+  ++     
Sbjct: 548  QLQLISRYTGVSADEAPLHKLGSGQWEKAKRKAAQQIRDAAAELLNIYARRAAREGHAFR 607

Query: 255  INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             +      ++   +  F  T  Q++AI  ++QDM     M R++ GDVG GKT VAL A 
Sbjct: 608  FSARD--YEQFANDFGFEETADQKAAIHAVIQDMISPQPMDRLVCGDVGFGKTEVALRAA 665

Query: 315  AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
              AV  G Q   +AP  +LA+QHY+ +        + V  ++          AL+ +A G
Sbjct: 666  FVAVTGGRQVAFLAPTTLLAEQHYQTLVDRFSKWPVKVAEMSRFRSTKEINAALKGVADG 725

Query: 375  QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
               I++GTH L     ++  L L+I+DE+HRFGV+ +  +        VL +TATPIPRT
Sbjct: 726  SVDIVVGTHKLLSADTKFKDLGLLIIDEEHRFGVRHKEAVKALRAEVDVLTLTATPIPRT 785

Query: 435  LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            L +   G  D+S I   P  R  IKT +   ++   + E +   L  G + Y++  ++E 
Sbjct: 786  LGMALEGLRDLSVIATAPQRRLAIKTFVRNEDK-GVIREAVLRELKRGGQVYFLHNEVET 844

Query: 495  KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             +     +   R   L     + I + HG+M +   E+VM  F      LL+ +T+IE G
Sbjct: 845  IE-----NRRARLEELLPE--ARIGVAHGQMPERQLEAVMRDFVAQRTNLLLCSTIIETG 897

Query: 555  IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY-----TRLS 609
            IDV  A+ I+I  A+ FGLAQLHQLRGRVGR    +   L+     S           + 
Sbjct: 898  IDVPSANTIVISRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDKESLTKQAAQRLDAIQ 957

Query: 610  VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
             ++    GF +A  DL+ R  GE+LG  QSG    L    +L++ +L  A +  K    +
Sbjct: 958  AMEELGSGFYLAMHDLEIRGAGEVLGENQSGNM--LEVGFQLYNEMLSEAVRSLKE--GK 1013

Query: 670  DPDLTSVRGQSIRILLY 686
            +PDL +    +  I L+
Sbjct: 1014 EPDLLAPMSAATDINLH 1030


>gi|329925538|ref|ZP_08280412.1| transcription-repair coupling factor [Paenibacillus sp. HGF5]
 gi|328939821|gb|EGG36161.1| transcription-repair coupling factor [Paenibacillus sp. HGF5]
          Length = 1175

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 142/463 (30%), Positives = 235/463 (50%), Gaps = 17/463 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT    +  +  + +A  +  L   +Q     G     +    Q+     P+  T  Q 
Sbjct: 561  EWTRVKNKVRSSVQDIADDLIKLYAERQSA--PGYGFEKDTSEQQEFEDMFPYDETPDQL 618

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI +I +DM Q   M R+L GDVG GKT VA+ A   A   G Q  ++ P  ILAQQHY
Sbjct: 619  RAITEIKKDMEQNRPMDRLLCGDVGYGKTEVAVRAAFKAAIEGKQVAVLVPTTILAQQHY 678

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  ++   N  I +++++    +  + + ++++  G   I+IGTH L    I +  L L+
Sbjct: 679  ETFRERFANYPINIQVLSRFRSRKEQNETIKKVKQGSVDILIGTHRLLSQDIVFKDLGLL 738

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 739  IVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 798

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  ++   V E ++  L+ G + Y++  +++  +E   +  +           + +
Sbjct: 799  QTYVVEHSQT-LVREAIERELARGGQVYYLYNRVQGIQEMAAQISM-------LVPEARV 850

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 851  GVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQ 910

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 911  LRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLSIRGAGNL 970

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            LG +Q G         +L+  +L    +  K  +  +P L S 
Sbjct: 971  LGAEQHGFI--ASVGFDLYSQMLAEEIQKRKVSMLGEPSLPSK 1011


>gi|257088697|ref|ZP_05583058.1| transcription-repair coupling factor [Enterococcus faecalis CH188]
 gi|256997509|gb|EEU84029.1| transcription-repair coupling factor [Enterococcus faecalis CH188]
          Length = 1179

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 808  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 980  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1012


>gi|319746177|gb|EFV98447.1| transcription-repair coupling factor [Streptococcus agalactiae ATCC
           13813]
          Length = 1165

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 169/539 (31%), Positives = 266/539 (49%), Gaps = 34/539 (6%)

Query: 130 KKLKNRIIMVHPHYIFHNSQDVN-FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++LK+   +    Y+ HN   V  F  IE +     G+  D    I  +   R+ +  E 
Sbjct: 480 ERLKDYNELSVGDYVVHNVHGVGKFLGIETIE--IQGIHRDYL-TIQYQNADRISIPVEQ 536

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPR--KAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           I  +LL K       E       P+     D  +    +      E +A  +  L    +
Sbjct: 537 I--ELLTKYVSADGKE-------PKINTLNDGRFKKAKQRVAKQVEDIADDLLKLYA--E 585

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
             +  G   + +  +      +  +  T+ Q  +IK+I QDM     M R+L GDVG GK
Sbjct: 586 RSQLQGFAFSPDDNMQNDFDNDFAYVETEDQLRSIKEIKQDMEGNRPMDRLLVGDVGFGK 645

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T VA+ A   AV    Q  ++ P  +LAQQH+E  K+   N  + V++++    +  +  
Sbjct: 646 TEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHFENFKERFSNYPVTVDVLSRFRSKKEQTD 705

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            L+R++ GQ  IIIGTH L    + +  L L+++DE+ RFGV+ + KL +  T   VL +
Sbjct: 706 TLKRLSKGQVDIIIGTHRLLSQDVVFSDLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTL 765

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TATPIPRTL ++ LG  D+S I   P  R P++T ++  N    V E +   +  G + +
Sbjct: 766 TATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETN-PGLVREAIIREIDRGGQVF 824

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++  +++           ++ + L E    +SI  +HG+MS+I  E+ +  F NG   +L
Sbjct: 825 YVYNKVDTID--------QKVSELQELVPEASIGFVHGQMSEIQLENTLIDFINGDYDVL 876

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKN 603
           +ATT+IE G+D+ + + + +ENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ 
Sbjct: 877 VATTIIETGVDISNVNTLFVENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEI 936

Query: 604 SYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           S  RL  +K       GF IA  DL  R  G ILG  QSG         E++  LLE A
Sbjct: 937 SEKRLDAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFID--SVGFEMYSQLLEQA 993


>gi|241765264|ref|ZP_04763245.1| transcription-repair coupling factor [Acidovorax delafieldii 2AN]
 gi|241365055|gb|EER59947.1| transcription-repair coupling factor [Acidovorax delafieldii 2AN]
          Length = 1172

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 154/498 (30%), Positives = 235/498 (47%), Gaps = 22/498 (4%)

Query: 196  KKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            +    S     N    P  K    +W    R+        A ++  +  R+  ++     
Sbjct: 546  QLQLISRYTGVNADEAPLHKLGSGQWEKAKRKAAEQVRDSAAELLNIYARRAAREG--HA 603

Query: 255  INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
                 +  +    +  F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A 
Sbjct: 604  FRYSPQDYETFANDFGFEETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAA 663

Query: 315  AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
              AV  G Q   +AP  +LA+QHY+ +        + V  ++          A++ I  G
Sbjct: 664  FVAVTGGKQVAFLAPTTLLAEQHYQTLVDRFSKWPVKVAEVSRFRSGKEITAAIKGIGDG 723

Query: 375  QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
               I++GTH L  +S +++ L L+I+DE+HRFGV+ + ++        VL +TATPIPRT
Sbjct: 724  TVDIVVGTHKLLSESTKFHNLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTATPIPRT 783

Query: 435  LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            L +   G  D+S I   P  R  IKT +        + E +   L  G + Y++  ++E 
Sbjct: 784  LGMALEGLRDLSVIATAPQRRLAIKTFVRNEG-TGVIREAVLRELKRGGQVYFLHNEVET 842

Query: 495  KKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             +         R   L E    + IA+ HG+M + + E VM  F      +L+ +T+IE 
Sbjct: 843  IE--------NRRQKLEEILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIET 894

Query: 554  GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV- 610
            GIDV  A+ II+  A+ FGLAQLHQLRGRVGR    +   L+      L+K +  RL   
Sbjct: 895  GIDVPTANTIIMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKQAQQRLEAI 954

Query: 611  --LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
              ++    GF +A  DL+ R  GE+LG  QSG    L    +L++ +L  A K  K    
Sbjct: 955  QQMEELGSGFYLAMHDLEIRGAGEVLGENQSGNM--LEVGFQLYNEMLNEAVKALKA--G 1010

Query: 669  QDPDLTSVRGQSIRILLY 686
            ++PDL S    +  I L+
Sbjct: 1011 KEPDLLSPLSVTTDINLH 1028


>gi|77411312|ref|ZP_00787661.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
 gi|77162648|gb|EAO73610.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
          Length = 1165

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 234/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
              D  +    +      E +A  +  L    +  +  G   + +  +      +  +  
Sbjct: 555 TLNDGRFKKAKQRVAKQVEDIADDLLKLYA--ERSQLQGFAFSPDDNMQNDFDNDFAYVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I QDM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TEDQLRSIKEIKQDMEGNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQH+E  K+   N  + V++++    +  +   L+R++ GQ  IIIGTH L    + + 
Sbjct: 673 AQQHFENFKERFSNYPVTVDVLSRFRSKKEQTDTLKRLSKGQVDIIIGTHRLLSQDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++           ++ + L E 
Sbjct: 793 NRYPVQTYVLETN-PGLVREAIIREIDRGGQVFYVYNKVDTID--------QKVSELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + +ENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEISEKRLDAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 993


>gi|229039959|ref|ZP_04189723.1| Transcription-repair-coupling factor [Bacillus cereus AH676]
 gi|229107740|ref|ZP_04237377.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15]
 gi|296500886|ref|YP_003662586.1| transcription-repair coupling factor [Bacillus thuringiensis BMB171]
 gi|228675713|gb|EEL30920.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15]
 gi|228727367|gb|EEL78560.1| Transcription-repair-coupling factor [Bacillus cereus AH676]
 gi|296321938|gb|ADH04866.1| transcription-repair coupling factor [Bacillus thuringiensis BMB171]
          Length = 1176

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 141/467 (30%), Positives = 239/467 (51%), Gaps = 23/467 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD------AKHILTQDPDLT 674
            LG +Q G    +     L+  +L+ A +       A++I+  + DL 
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIEQRRGTDGAENIVNVEIDLE 1026


>gi|159899175|ref|YP_001545422.1| transcription-repair coupling factor [Herpetosiphon aurantiacus ATCC
            23779]
 gi|159892214|gb|ABX05294.1| transcription-repair coupling factor [Herpetosiphon aurantiacus ATCC
            23779]
          Length = 1207

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 145/452 (32%), Positives = 234/452 (51%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+  A  E LA ++  L   +Q     G   + +    +++  + P++ T  Q 
Sbjct: 578  DWERAKRKVRADVEELATELLDLYAARQL--VEGFAYSSDTSWQRELEDSFPYTETDDQL 635

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+++  DM     M R++ GDVG GKT VAL A   AV+ G Q  ++ P  +LAQQH+
Sbjct: 636  RAIEEVKSDMENTRPMDRLICGDVGFGKTEVALRAAFKAVQDGRQVAVLVPTTVLAQQHF 695

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  Q   + +E+++     + ++   ERI  G+  I++GTH +    I + +L LV
Sbjct: 696  ETFSRRMQMFPVRIEMLSRFRSASQQKSITERIVKGEIDIVVGTHRILSSDIHFKQLGLV 755

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L +      VL +TATPIPRT+ +   G  D+S I   P  R PI
Sbjct: 756  IIDEEQRFGVKDKERLKKLRHEIDVLTLTATPIPRTMHMALSGIRDLSVIDTPPDDRMPI 815

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT + P N +  V + +   L    +AY++  +++        +V  R   L     + I
Sbjct: 816  KTYVQPYNEM-LVRDAILRELGRNGQAYFVHNRVQSIY-----TVANRLQKLVPE--ARI 867

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E V+  F  G   + + TT+IE GIDV  A+ +II++A  +GLAQL+Q
Sbjct: 868  GVGHGQMPEKALEKVILQFFEGLFDVFVCTTIIESGIDVPSANTMIIDDATTYGLAQLYQ 927

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  +     + Y+P   + + +  RL  ++   +   GF IA  DL+ R  G +
Sbjct: 928  LRGRVGRSTQRGYAYMFYNPTKAMGEEAQKRLEAIQEATELGAGFRIAMRDLEIRGTGNL 987

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG    +     L+  LL  A +  + 
Sbjct: 988  LGAEQSGNITTIGFD--LYSRLLSQAVERVRE 1017


>gi|51894370|ref|YP_077061.1| transcription-repair coupling factor [Symbiobacterium thermophilum
            IAM 14863]
 gi|51858059|dbj|BAD42217.1| transcription-repair coupling factor [Symbiobacterium thermophilum
            IAM 14863]
          Length = 1243

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 145/426 (34%), Positives = 224/426 (52%), Gaps = 15/426 (3%)

Query: 254  PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
                +    ++     P+  T  Q +AI +I  DM +   M R+L GDVG GKT VAL A
Sbjct: 670  AFPPDTPWQREFEDAFPYEETPDQLTAIAEIKADMEKARPMDRLLLGDVGYGKTEVALRA 729

Query: 314  MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
               A  AG Q  I+ P  ILAQQHY   K   +   I + ++        + + +  +A 
Sbjct: 730  AFKAATAGKQVAILVPTTILAQQHYATCKSRMEGFPINLAVLNRFKSPKEQAEIIRGLAE 789

Query: 374  GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            G   ++IGTH L  D +++  L L+IVDE+ RFGV  + ++ Q      VL ++ATPIPR
Sbjct: 790  GTIDVVIGTHRLLSDDVKFKDLGLLIVDEEQRFGVAHKERIKQLRANVDVLTLSATPIPR 849

Query: 434  TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            TL +  +G  D+S IT  P  R P++T +   +    V + +   LS G + +++  +I+
Sbjct: 850  TLHMAMVGLRDMSIITTPPEDRYPVETFVAEYDD-ALVQDAIGRELSRGGQVFYVHNRIQ 908

Query: 494  EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               +     V  R + L     + IA+ HG+MS+   E ++  F +G   +L+ATT+IE 
Sbjct: 909  TLDD-----VAARLHRLVPE--ARIAVAHGQMSEDRLEKIVLDFMDGEYDVLVATTIIEN 961

Query: 554  GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL 611
            GID+   + II+E+A+H GL+QL+QLRGRVGR   ++    LY     L++ S  RL  +
Sbjct: 962  GIDMPQVNTIIVEDADHLGLSQLYQLRGRVGRSNRLAYAYFLYRRDKVLTEASEKRLRAI 1021

Query: 612  KNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            K+      GF IA  DL+ R  G ILG +Q G    +    +L+  LLE A ++ K    
Sbjct: 1022 KDFTELGSGFKIAMRDLEIRGAGNILGPEQHGFI--VSVGFDLYCQLLEEAVRELKGEPA 1079

Query: 669  QDPDLT 674
             +P++ 
Sbjct: 1080 PEPEIQ 1085


>gi|300868792|ref|ZP_07113400.1| Transcription-repair-coupling factor [Oscillatoria sp. PCC 6506]
 gi|300333202|emb|CBN58592.1| Transcription-repair-coupling factor [Oscillatoria sp. PCC 6506]
          Length = 1226

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 141/451 (31%), Positives = 235/451 (52%), Gaps = 19/451 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     +     + LA  +  L  ++  +  +G     +    Q++  + P+ PT  Q  
Sbjct: 629  WEKTKAKVRKSIKKLAVDLLNLYAKRAQQ--VGFAFPPDMPWQQELEDSFPYQPTPDQLK 686

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            A +D+ +DM     M R++ GDVG GKT VA+ A+  A+ AG Q  ++AP  IL QQHY 
Sbjct: 687  ATQDVKRDMEGDRPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVAMLAPTTILTQQHYH 746

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +K+      I V ++     +  RR+   R+A G+  +++GT ++    +++  L L++
Sbjct: 747  TLKERFAPYPIEVGLLNRFRTETERRELQRRLASGELDVVVGTQSILSKGVKFKDLGLMV 806

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV+Q+  +    T   VL +TATPIPRTL ++  G  ++S I   P  R+PI+
Sbjct: 807  VDEEQRFGVKQKEAIKALKTMVDVLTLTATPIPRTLYMSLSGIREMSIIATPPPTRRPIQ 866

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSI 518
            T +   +  + V   ++  L  G + +++ P+IE         + +    L      + I
Sbjct: 867  THLAAYD-PEVVRTAIRQELDRGGQVFYVVPRIE--------GIDDLAAQLGVMVPGAKI 917

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            AI HG+M   + E++M +F      +L+ TT+IE G+D+   + I+IE+A+ FGLAQL+Q
Sbjct: 918  AIAHGQMDASELEAIMLAFSAADFDILVCTTIIESGLDIPRVNTILIEDAQRFGLAQLYQ 977

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L Y     L+  +  RL  ++       G+ +A  DL+ R  G+I
Sbjct: 978  LRGRVGRAGVQAHAWLFYPNQNRLTDEARQRLRAIQEFAQLGSGYQLAIRDLEIRGAGDI 1037

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            LG +QSG    +     L+  +LE A ++ K
Sbjct: 1038 LGAEQSGQMDAIGFD--LYAQMLEEAIREIK 1066


>gi|228919004|ref|ZP_04082384.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
 gi|228840653|gb|EEM85914.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
          Length = 1176

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 141/467 (30%), Positives = 239/467 (51%), Gaps = 23/467 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD------AKHILTQDPDLT 674
            LG +Q G    +     L+  +L+ A +       A++I+  + DL 
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIEQRRGTDGAENIVNVEIDLE 1026


>gi|229067818|ref|ZP_04201136.1| Transcription-repair-coupling factor [Bacillus cereus F65185]
 gi|228715302|gb|EEL67160.1| Transcription-repair-coupling factor [Bacillus cereus F65185]
          Length = 1176

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 141/467 (30%), Positives = 239/467 (51%), Gaps = 23/467 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD------AKHILTQDPDLT 674
            LG +Q G    +     L+  +L+ A +       A++I+  + DL 
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIEQRRGTDGAENIVNVEIDLE 1026


>gi|229188339|ref|ZP_04315388.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876]
 gi|228595138|gb|EEK52908.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876]
          Length = 1176

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 141/467 (30%), Positives = 239/467 (51%), Gaps = 23/467 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD------AKHILTQDPDLT 674
            LG +Q G    +     L+  +L+ A +       A++I+  + DL 
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIEQRRGTDGAENIVNVEIDLE 1026


>gi|76788164|ref|YP_328735.1| transcription-repair coupling factor [Streptococcus agalactiae
           A909]
 gi|77405617|ref|ZP_00782706.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
 gi|76563221|gb|ABA45805.1| transcription-repair coupling factor [Streptococcus agalactiae
           A909]
 gi|77175761|gb|EAO78541.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
          Length = 1165

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 235/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
              D  +    +      E +A  +  L    +  +  G   + +  +      +  +  
Sbjct: 555 TLNDGRFKKAKQRVAKQVEDIADDLLKLYA--ERSQLQGFAFSPDDNMQNDFDNDFAYVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I QDM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TEDQLRSIKEIKQDMEGNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQH+E  K+   N  + V++++    +  +   L+R++ GQ  IIIGTH L    + + 
Sbjct: 673 AQQHFENFKERFSNYPVTVDVLSRFRSKKEQTDTLKRLSKGQVDIIIGTHRLLSQDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++  +        ++ + L E 
Sbjct: 793 NRYPVQTYVLETN-PGLVREAIIREIDRGGQVFYVYNKVDTIE--------QKVSELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + +ENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEISEKRLDAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 993


>gi|206972595|ref|ZP_03233538.1| transcription-repair coupling factor [Bacillus cereus AH1134]
 gi|228950602|ref|ZP_04112737.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            kurstaki str. T03a001]
 gi|229176654|ref|ZP_04304059.1| Transcription-repair-coupling factor [Bacillus cereus 172560W]
 gi|206732497|gb|EDZ49676.1| transcription-repair coupling factor [Bacillus cereus AH1134]
 gi|228606821|gb|EEK64237.1| Transcription-repair-coupling factor [Bacillus cereus 172560W]
 gi|228809077|gb|EEM55561.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            kurstaki str. T03a001]
          Length = 1176

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 141/467 (30%), Positives = 239/467 (51%), Gaps = 23/467 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD------AKHILTQDPDLT 674
            LG +Q G    +     L+  +L+ A +       A++I+  + DL 
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIEQRRGTDGAENIVNVEIDLE 1026


>gi|261403915|ref|YP_003240156.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10]
 gi|261280378|gb|ACX62349.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10]
          Length = 1175

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 142/463 (30%), Positives = 235/463 (50%), Gaps = 17/463 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT    +  +  + +A  +  L   +Q     G     +    Q+     P+  T  Q 
Sbjct: 561  EWTRVKNKVRSSVQDIADDLIKLYAERQSA--PGYGFEKDTSEQQEFEDMFPYDETPDQL 618

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI +I +DM Q   M R+L GDVG GKT VA+ A   A   G Q  ++ P  ILAQQHY
Sbjct: 619  RAITEIKKDMEQNRPMDRLLCGDVGYGKTEVAVRAAFKAAIEGKQVAVLVPTTILAQQHY 678

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  ++   N  I +++++    +  + + ++++  G   I+IGTH L    I +  L L+
Sbjct: 679  ETFRERFANYPINIQVLSRFRSRKEQNETIKKVKQGSVDILIGTHRLLSQDIVFKDLGLL 738

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 739  IVDEEQRFGVTHKEKLKKLKTNIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 798

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  ++   V E ++  L+ G + Y++  +++  +E   +  +           + +
Sbjct: 799  QTYVVEHSQT-LVREAIERELARGGQVYYLYNRVQGIQEMAAQISM-------LVPEARV 850

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 851  GVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQ 910

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 911  LRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLSIRGAGNL 970

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            LG +Q G         +L+  +L    +  K  +  +P L S 
Sbjct: 971  LGAEQHGFI--ASVGFDLYSQMLAEEIQKRKVSMLGEPSLPSK 1011


>gi|221632687|ref|YP_002521908.1| transcription-repair coupling factor [Thermomicrobium roseum DSM
            5159]
 gi|221157121|gb|ACM06248.1| transcription-repair coupling factor [Thermomicrobium roseum DSM
            5159]
          Length = 1165

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 149/483 (30%), Positives = 237/483 (49%), Gaps = 20/483 (4%)

Query: 188  WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            ++  D L +    ++ E+ +      +    EW+   R        LA ++  L   ++ 
Sbjct: 534  YLPVDQLDR---ITLYESLDGEPKLTRLGSPEWSRVKRRVREAVRELAFELLQLYAAREA 590

Query: 248  KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
                GI    + +  +++  + P+  T  Q  AI+++  DM +   M R+L GDVG GKT
Sbjct: 591  A--PGIAFGPDTQWDRELEESFPYEETPDQWRAIQEVKADMERPRPMDRLLCGDVGFGKT 648

Query: 308  LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             VAL A   AV  G Q  I+ P  +LA QHY   ++   +  + +E+++    +  +R  
Sbjct: 649  EVALRAAFKAVNNGYQVAILVPTTVLALQHYNTFRERLASYPVRIEMLSRLRSKREQRAI 708

Query: 368  LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            +E +  G   I+IGTH L Q  + + +L LVI+DE+HRFGV  +    +  T   VL MT
Sbjct: 709  IEGLRAGTVDIVIGTHRLLQRDVAFKRLGLVIIDEEHRFGVAHKEHFKRLRTNVDVLTMT 768

Query: 428  ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            ATPIPRTL L   G  D+S I   P  R P++T + P  R   + E +   ++ G + Y 
Sbjct: 769  ATPIPRTLYLALSGVRDLSVIATPPVDRTPVRTFVTPA-RDSVIREAILREIARGGQVYV 827

Query: 488  ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +  ++      +     +R   L     +  A+ HG+M + + E ++  F      +LI 
Sbjct: 828  VHNRV-----HSILDFAQRLRGLVPE--ARFAVAHGQMPEQELERIIVDFIERKYDVLIC 880

Query: 548  TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSY 605
            T +IE G+D+   + III+ A+  GL QL+QLRGRVGR  + +   LLY    PLS  + 
Sbjct: 881  TAIIESGVDIPSVNTIIIDQAQQLGLTQLYQLRGRVGRSHQRAYAYLLYDDRRPLSAEAR 940

Query: 606  TRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
             RL  ++   +   G  IA  DL+ R  G ILG +QSG         EL+  LL  A ++
Sbjct: 941  ARLEAIQEATELGAGLQIALRDLEIRGAGNILGPEQSGHI--AAVGLELYTQLLARAVQE 998

Query: 663  AKH 665
             + 
Sbjct: 999  LRE 1001


>gi|322386426|ref|ZP_08060055.1| transcription-repair coupling factor [Streptococcus cristatus ATCC
           51100]
 gi|321269512|gb|EFX52443.1| transcription-repair coupling factor [Streptococcus cristatus ATCC
           51100]
          Length = 1167

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 147/452 (32%), Positives = 239/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + + +   +     P+  
Sbjct: 559 KLNDGRFQKTKQKVQHQVEDIADDLIKLYA--ERSQLKGFQFSSDDQHQVEFDNAFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q  I+ P  +L
Sbjct: 617 TEDQLRSIQEIKKDMESDRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAILVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  + V++++    +  +++ LE++  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHYTNFKERFNDFAVNVDVLSRFRSKGEQKETLEKLEKGQIDIIIGTHRLLSADVKFS 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLLVIDEEQRFGVKHKEKLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N+   + + +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 797 NRYPVQTYVLENNKT-VIRDAVLREIDRGGQVYYLYNKVDTIE--------QKVSELKEL 847

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS++  E+ +  F NG   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 848 IPEASIGYVHGQMSEVRLENTLLDFVNGEYDILVTTTIIETGVDIPNANTLFIENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLMYRPDKSLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGSSQSGFID--SVGFEMYSQLLEEA 997


>gi|86608683|ref|YP_477445.1| transcription-repair coupling factor [Synechococcus sp.
            JA-2-3B'a(2-13)]
 gi|86557225|gb|ABD02182.1| transcription-repair coupling factor [Synechococcus sp.
            JA-2-3B'a(2-13)]
          Length = 1158

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 146/463 (31%), Positives = 240/463 (51%), Gaps = 20/463 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++       +A  +  L  ++  ++        +    Q++  + P+  T  Q  
Sbjct: 556  WEKTKQKVKKSLRKVAFDLLQLYAKRAEQEG--YAFPPDSPWQQELEDSFPYPLTPDQLR 613

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            A+++I +DM     M R+L GDVG GKT VA+ A+  AV AG Q  ++AP  IL QQHY 
Sbjct: 614  AVQEIKRDMESPRPMDRLLCGDVGFGKTEVAIRAIFKAVTAGKQVALLAPTTILTQQHYH 673

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +K+      I V ++        +++ L R+  G+  +++GTH L    +Q+  L L++
Sbjct: 674  TLKERFAPYPIQVGLLNRFRTSEEKKEILSRLKSGELDVVVGTHQLLGKDVQFRDLGLLV 733

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV Q+ K+    T   VL +TATPIPRTL +   G  ++S I   P  R+PIK
Sbjct: 734  IDEEQRFGVNQKEKIKLLKTQVDVLTLTATPIPRTLYMALSGLREMSLIQTPPPSRRPIK 793

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSI 518
            T + P N  + +   ++  L  G + +++  +IE  +E++          L E    + I
Sbjct: 794  TYLSPYN-PEVIRTAIRQELDRGGQVFYVVNRIEGIEEAS--------AKLREWVPGARI 844

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            AI HG+M + + E+ M +F NG   +L+ TT+IE G+D+   + I+IENA+ FGLAQL+Q
Sbjct: 845  AIAHGQMPEGELEATMLAFNNGEIDILVCTTIIESGLDIPRVNTILIENAQEFGLAQLYQ 904

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L Y     L++ +  RL  ++       G+ +A  D++ R  G +
Sbjct: 905  LRGRVGRAGIQAHAWLFYREDGILTEEARKRLQAIQEFTQLGSGYQLAMRDMEIRGIGNL 964

Query: 634  LGIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            LG +QSG      F +    L +++ EI  ++   +     DL
Sbjct: 965  LGTEQSGQVNAVGFDLYLEMLQEAIREIRGQEIPQVEDTQIDL 1007


>gi|30018324|ref|NP_829955.1| transcription-repair coupling factor [Bacillus cereus ATCC 14579]
 gi|229125571|ref|ZP_04254604.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4]
 gi|29893864|gb|AAP07156.1| Transcription-repair coupling factor [Bacillus cereus ATCC 14579]
 gi|228657888|gb|EEL13693.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4]
          Length = 1176

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 141/467 (30%), Positives = 239/467 (51%), Gaps = 23/467 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD------AKHILTQDPDLT 674
            LG +Q G    +     L+  +L+ A +       A++I+  + DL 
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIEQRRGTDGAENIVNVEIDLE 1026


>gi|262401992|ref|ZP_06078557.1| transcription-repair coupling factor [Vibrio sp. RC586]
 gi|262351964|gb|EEZ01095.1| transcription-repair coupling factor [Vibrio sp. RC586]
          Length = 418

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 184/398 (46%), Positives = 259/398 (65%), Gaps = 6/398 (1%)

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           + +I  D+++ + M+R++QGDVGSGKTLVA +A   A+E G Q  +MAP  +LA+QH   
Sbjct: 2   VAEIEADLAKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALN 61

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
             ++ +   I V  + G +    R   L RIA G+  +++GTHALFQ+ + +  L LVI+
Sbjct: 62  FAQWLEPMGIQVGWLAGKLKGKARETELARIAGGEVKMVVGTHALFQEQVSFDHLALVII 121

Query: 401 DEQHRFGVQQRLKLTQ----KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           DEQHRFGV QRL+L +    +   PH L+MTATPIPRTL +T+  D++ S I E P GR 
Sbjct: 122 DEQHRFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRT 181

Query: 457 PIKTVIIPINRIDEVIERLKV-VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           PI+TV IP  + DE++ER++   L+EGK+AYW+C  I+E +    ++  E    L     
Sbjct: 182 PIQTVAIPDTKRDEIVERIRHACLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLP 241

Query: 516 S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              I ++HGRM   +K++VM +FKN    LL+ATTVIEVG+DV +AS++IIEN E  GLA
Sbjct: 242 EVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLA 301

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRVGRG   S C+LL+H PLSK +  RL VL+ + DGF+IA+ DL+ R  GE+L
Sbjct: 302 QLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELL 361

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           G KQ+G+  F IA       L+   ++ A+HI  + P 
Sbjct: 362 GTKQTGLADFKIADLVRDQQLVPQVQRIARHIHERYPQ 399


>gi|229142859|ref|ZP_04271302.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24]
 gi|228640622|gb|EEK97009.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24]
          Length = 1183

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 141/467 (30%), Positives = 239/467 (51%), Gaps = 23/467 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 579  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 636

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 637  RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 696

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 697  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 756

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 757  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 816

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 817  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 868

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 869  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 928

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 929  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 988

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD------AKHILTQDPDLT 674
            LG +Q G    +     L+  +L+ A +       A++I+  + DL 
Sbjct: 989  LGAEQHGFIDSVGFD--LYSQMLKDAIEQRRGTDGAENIVNVEIDLE 1033


>gi|300114141|ref|YP_003760716.1| transcription-repair coupling factor [Nitrosococcus watsonii C-113]
 gi|299540078|gb|ADJ28395.1| transcription-repair coupling factor [Nitrosococcus watsonii C-113]
          Length = 1158

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 153/479 (31%), Positives = 241/479 (50%), Gaps = 19/479 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K     W     +       +A ++  L +  Q       P+           R  PF 
Sbjct: 553  HKLGSSHWERAKHKARERVRDVAAEL--LAIYAQRAARKKPPLPTPDSHYAAFARAFPFE 610

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q  AI+ ++ D++    M R++ GDVG GKT VA+ A     +AG Q  ++ P  +
Sbjct: 611  ETPDQADAIQAVIADLTSDQPMDRLVCGDVGFGKTEVAMRAAFIVSQAGKQVAVLVPTTL 670

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQHY+  K    +    VE+I+    +  +   + RIA G+A I+IGTH L Q++I +
Sbjct: 671  LAQQHYQSFKDRFADWPARVEVISRFSSRKEQEAVINRIADGRADIVIGTHKLLQENIHF 730

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L LVI+DE+HRFGV+Q+ ++        +L +TATPIPRTL ++     D+S I   P
Sbjct: 731  KNLGLVIIDEEHRFGVRQKERMKALRAEVDILTLTATPIPRTLHMSLSNLRDLSIIATPP 790

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   N  + + E L   +  G + Y++  ++E   +     + +R  +L  
Sbjct: 791  ARRLAIKTFVRQWND-NLLREALLREIKRGGQVYFLHNEVESINK-----MAQRIQALFP 844

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + I HG+M + + E  M +F +    +L+ TT+IE GID+  A+ III  A+  G
Sbjct: 845  E--AKVGIAHGQMRERELEQTMLNFYHRRFNILVCTTIIETGIDIPSANTIIIHRADKLG 902

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQL+QLRGRVGR    +   L+  P   ++ ++  RL  +++ E+   GF +A  D++ 
Sbjct: 903  LAQLYQLRGRVGRSHHRAYAYLIVPPRSVMTADAVKRLEAIESLEELGAGFTLASHDMEI 962

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE+LG  QSG  + +     L++ LLE A    K    Q  DL     Q   + L+
Sbjct: 963  RGAGELLGKDQSGQMQEIGFD--LYNDLLERAVNSLKS--GQALDLEQPPAQGPEVDLH 1017


>gi|283469795|emb|CAQ49006.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus ST398]
          Length = 1168

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 232/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|322390530|ref|ZP_08064048.1| transcription-repair coupling factor [Streptococcus parasanguinis
           ATCC 903]
 gi|321142804|gb|EFX38264.1| transcription-repair coupling factor [Streptococcus parasanguinis
           ATCC 903]
          Length = 1164

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 146/452 (32%), Positives = 239/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + + +  +   ++ P+  
Sbjct: 555 KLNDGRFQRTKQKVQTQVEDIADDLIKLYA--ERSQLEGFAYSQDDENQEAFEQDFPYIE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TDDQLRSIEEIKKDMESNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  ++  + V +++    +A +++ LE++  G+  IIIGTH L    + + 
Sbjct: 673 AQQHYANFKERFESFAVEVAVLSRFQSKAEQKETLEKLKKGRVDIIIGTHRLLSKDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G +AY++  +++  +        ++ + L E 
Sbjct: 793 NRYPVQTFVLETNPT-IIRDAVLREMDRGGQAYYLYNKVDTIE--------QKVSELKEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS++  E+ +  F NG   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 844 IPEASIGFVHGQMSEVRLENTLLDFINGEYDVLVTTTIIETGVDIPNANTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKSLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEEA 993


>gi|306992299|gb|ADN19266.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 446

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 164/450 (36%), Positives = 264/450 (58%), Gaps = 8/450 (1%)

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL- 179
            +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL 
Sbjct: 1   EEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALH 60

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+A
Sbjct: 61  DYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMA 117

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++Q
Sbjct: 118 LFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQ 175

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++
Sbjct: 176 GDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSI 235

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K  
Sbjct: 236 SPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGE 295

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     +
Sbjct: 296 NPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEV 355

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSF 537
            +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F
Sbjct: 356 KKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKVMEEF 415

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            NG   +L++TTVIEVG++V +A+++I+EN
Sbjct: 416 VNGKIDILVSTTVIEVGVNVPNATVMIVEN 445


>gi|290968874|ref|ZP_06560411.1| transcription-repair coupling factor [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781170|gb|EFD93761.1| transcription-repair coupling factor [Megasphaera genomosp. type_1
           str. 28L]
          Length = 1095

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 131/481 (27%), Positives = 226/481 (46%), Gaps = 20/481 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +     + LA ++  L  +++     G     +    ++     P+  T  Q 
Sbjct: 497 DWQKTRAKAQKSVDNLAEKLVTLYAKRE--VVPGFAYPPDTPFQREFEEAFPYEETADQL 554

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A+  I   M +   M  ++ GDVG GKT VA+ A+  AV  G Q  ++ P  +LAQQHY
Sbjct: 555 KAVAHIKAAMEKPYPMDCLVCGDVGFGKTEVAMRAIFKAVMGGKQVAVLVPTTVLAQQHY 614

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +   +      +   ++        R++ L R   G   ++IGTH+L    +++    L+
Sbjct: 615 QTFTERLSPFGVKCAVLNRFCSYKERKEILARTLTGDVDVLIGTHSLLNKKVKFKNPGLL 674

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ RFGV Q+ K    A    VL ++ATPIPRTL ++ +   ++  I   P  R P+
Sbjct: 675 VVDEEQRFGVAQKEKWKAWAETIDVLSLSATPIPRTLHMSLVNLREMCVIETPPTDRFPV 734

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T +   +    V + +      G + +++  +++         + E   +L      +I
Sbjct: 735 QTYVTEYDAR-IVRDAVMREKRRGGQVFFVYNRVDT-----MARMQEELAALLPEL--TI 786

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+MS    E  M  F  G   LL+ ++++E G+DV +A+ I+I +A+HFGL+QL+Q
Sbjct: 787 RMAHGQMSGGKLEEAMFDFYEGKYDLLLCSSLVENGLDVANANTILIYDADHFGLSQLYQ 846

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           +RGRVGR   ++     Y P   LS+ +  RL  +K       GF IA  DL+ R  G +
Sbjct: 847 MRGRVGRSHHLAYAYFFYRPQKVLSEVAEKRLEAIKEFTELGSGFKIAMRDLEIRGAGNL 906

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           LG +Q G          ++  +LE A K  KH   +   +T+     + I +  +  +  
Sbjct: 907 LGREQHG--NIAGVGFAMYCQMLEAAIKRVKHGEEK---ITAPLETVLDIQVDAFLDDAY 961

Query: 694 F 694
            
Sbjct: 962 I 962


>gi|319891456|ref|YP_004148331.1| Transcription-repair coupling factor [Staphylococcus pseudintermedius
            HKU10-03]
 gi|317161152|gb|ADV04695.1| Transcription-repair coupling factor [Staphylococcus pseudintermedius
            HKU10-03]
 gi|323465374|gb|ADX77527.1| transcription-repair coupling factor [Staphylococcus pseudintermedius
            ED99]
          Length = 1170

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 149/458 (32%), Positives = 235/458 (51%), Gaps = 17/458 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ ++ +G     +         + P+  T  Q 
Sbjct: 570  EWKKTKAKVQRSVEDIADELIALY--KEREQSVGYQFGPDTAEQYAFEMDFPYDLTDDQA 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM  +  M R+L GDVG GKT VA+ A   AV +G Q   + P  ILAQQHY
Sbjct: 628  KSIIEIKNDMESQRPMDRLLCGDVGYGKTEVAVRAAFKAVMSGKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  ++  + + +++        R+  E +  G   I++GTH L   +++Y  L L+
Sbjct: 688  ETLIERMRDFPVEIHLMSRFRTPKEVRETKEGLKSGFVDIVVGTHKLLGKTVEYKDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 748  IVDEEQRFGVRHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSIIETPPENRFPV 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  ++    E       E+   L     +SI
Sbjct: 808  QTYVLEQN-TNFIKEALERELSRDGQVFYLYNRVSSIYE-----KREQLQMLMPD--ASI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG++ + D E  M  F NG   +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 860  GVAHGQLPERDLEETMLDFINGEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 919

Query: 579  LRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L   +  L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSSRIGYAYFLHATNRVLNEVAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            LG +Q G    +     L+  +LE A  + + I  + P
Sbjct: 980  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGIKEETP 1015


>gi|314932725|ref|ZP_07840095.1| transcription-repair coupling factor [Staphylococcus caprae C87]
 gi|313654555|gb|EFS18307.1| transcription-repair coupling factor [Staphylococcus caprae C87]
          Length = 1169

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 157/482 (32%), Positives = 244/482 (50%), Gaps = 20/482 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +  +G     +         + P+  T  Q 
Sbjct: 568  EWKKTKAKVQQSVEDIADELIDLY--KEREMSVGYQYGEDTAEQSAFEHDFPYELTPDQG 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I  DM ++  M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 626  KSIEEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        R+  E +  G   I++GTH L    IQY  L L+
Sbjct: 686  ETLIERMQDYPVEIQLVSRFRTTKEVRETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 746  IVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 806  QTYVLEQN-TNFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPE--ANI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+Q
Sbjct: 858  AVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +Q G    +     L+  +LE A  + + I  + PD   V    + + L  Y   E 
Sbjct: 978  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGIKEETPDAPEVE---VELNLDAYLPAEY 1032

Query: 694  FQ 695
             Q
Sbjct: 1033 IQ 1034


>gi|320161444|ref|YP_004174668.1| transcription-repair coupling factor [Anaerolinea thermophila
           UNI-1]
 gi|319995297|dbj|BAJ64068.1| transcription-repair coupling factor [Anaerolinea thermophila
           UNI-1]
          Length = 1129

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 141/453 (31%), Positives = 227/453 (50%), Gaps = 17/453 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW S  +        +A ++  L  ++Q     G   + +    +++  + P+  T+ Q 
Sbjct: 528 EWASVKQRVRESVLEVAQELLELYAKRQVA--KGHAFSPDTMWQKELEASFPYIETEDQI 585

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI+ + +DM +   M R+L GDVG GKT VAL A   AV  G Q  ++ P  +LAQQH+
Sbjct: 586 KAIQAVKRDMERPRPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAMLVPTTVLAQQHF 645

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E  ++      ++VE+++       + + L+++  G   IIIGTH L Q  + +  L LV
Sbjct: 646 ETFRQRLAPFPVMVEMLSRFRTPKEQERILQQLREGTVDIIIGTHRLLQPDVAFKDLGLV 705

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  +    +  T   VL +TATPIPRTL +   G  DIS+I   PA R PI
Sbjct: 706 IIDEEQRFGVTHKEYFKKLRTEVDVLTLTATPIPRTLYMALTGVRDISQINTPPAERLPI 765

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            T I P +    V + +   +  G + +++  +++           +    L     + I
Sbjct: 766 ITHIGPYSPR-LVRQAILREIERGGQVFFVHNRVQTIHAME-----QHLQKLVPE--ARI 817

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I HG+M +     VM +F  G   +L+ T++IE G+D+ +A+ +I++  + FGLAQL+Q
Sbjct: 818 GIAHGQMPEEALSRVMMAFTRGELDVLLCTSIIESGLDIPNANTLIVDRGDTFGLAQLYQ 877

Query: 579 LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGRG + +      H     +     RL ++        G+ IA  DL+ R  GE+
Sbjct: 878 LRGRVGRGAQRAYAYFFRHRRKAPTPEGQERLEIIAENTQLGSGYSIAMRDLEMRGAGEL 937

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           LG +Q GM         L+  LL  A +  + +
Sbjct: 938 LGTRQHGMI--AAVGFHLYTRLLAQAVRQIREV 968


>gi|223044420|ref|ZP_03614453.1| transcription-repair coupling factor [Staphylococcus capitis SK14]
 gi|222442209|gb|EEE48321.1| transcription-repair coupling factor [Staphylococcus capitis SK14]
          Length = 1169

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 157/482 (32%), Positives = 244/482 (50%), Gaps = 20/482 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +  +G     +         + P+  T  Q 
Sbjct: 568  EWKKTKAKVQQSVEDIADELIDLY--KEREMSVGYQYGEDTAEQSAFEHDFPYELTPDQG 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I  DM ++  M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 626  KSIEEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        R+  E +  G   I++GTH L    IQY  L L+
Sbjct: 686  ETLIERMQDYPVEIQLVSRFRTTKEVRETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 746  IVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 806  QTYVLEQN-TNFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPE--ANI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE A+ FGL+QL+Q
Sbjct: 858  AVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +Q G    +     L+  +LE A  + + I  + PD   V    + + L  Y   E 
Sbjct: 978  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGIKEETPDAPEVE---VELNLDAYLPAEY 1032

Query: 694  FQ 695
             Q
Sbjct: 1033 IQ 1034


>gi|146319860|ref|YP_001199571.1| transcription-repair coupling factor [Streptococcus suis 98HAH33]
 gi|145690666|gb|ABP91171.1| Transcription-repair coupling factor (superfamily II helicase)
           [Streptococcus suis 98HAH33]
          Length = 845

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 150/474 (31%), Positives = 243/474 (51%), Gaps = 24/474 (5%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           DLL K    S  +A  +     K  D  +    ++     E +A  +  L    +  +  
Sbjct: 220 DLLSKY-LASDGKAPKV----NKLNDGRFQRTKQKVQKQVEDIADDLIKLYA--ERSQLK 272

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   + + +   +         T  Q  +I +I +DM + + M R+L GDVG GKT VA+
Sbjct: 273 GFAFSPDDENQVEFDNYFTHVETDDQLRSIDEIKKDMEKDSPMDRLLVGDVGFGKTEVAM 332

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV  G Q  I+ P  +LAQQHY   ++      + V++++    +A + K LE++
Sbjct: 333 RAAFKAVNDGKQVAILVPTTVLAQQHYANFQERFAEFPVNVDVMSRFKTKAEQEKTLEKL 392

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             GQ  I+IGTH L    + +  L L+++DE+ RFGV+ + +L +      VL +TATPI
Sbjct: 393 KKGQVDILIGTHRLLSKDVVFADLGLLVIDEEQRFGVKHKERLKELKKKIDVLTLTATPI 452

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL ++ LG  D+S I   P  R P++T ++  N    + + +   +  G + Y++  +
Sbjct: 453 PRTLQMSMLGIRDLSVIETPPTNRYPVQTYVMETN-PSVIRDAMLREIDRGGQVYYLYNK 511

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           ++  +        ++ + L E    + I  +HG+MS+I  E+ + +F  G   +L+ TT+
Sbjct: 512 VDTIE--------QKVSELKELVPEATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTI 563

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL 608
           IE G+D+ +A+ + IENA+H GL+ L+QLRGRVGR   I+   L+Y P   L++ +  RL
Sbjct: 564 IETGVDIPNANTLFIENADHMGLSTLYQLRGRVGRSSRIAYAYLMYRPDKSLTEVAEKRL 623

Query: 609 SVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             +K       GF IA +DL  R  G ILG  QSG         E++  LLE A
Sbjct: 624 EAIKGFTELGSGFKIAMQDLSIRGAGNILGAAQSGFID--SVGYEMYSQLLEQA 675


>gi|163856004|ref|YP_001630302.1| transcription-repair coupling factor [Bordetella petrii DSM 12804]
 gi|163259732|emb|CAP42033.1| transcription-repair coupling factor [Bordetella petrii]
          Length = 1153

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 144/473 (30%), Positives = 231/473 (48%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  ++  ++     + +     +       F  T  Q 
Sbjct: 560  QWDKARRKAARQVRDTAAELLALYAQRAAREGYVFKLPLND--YEAFAEGFGFEETADQS 617

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH 
Sbjct: 618  AAIQAVIADMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVANGKQVALLCPTTLLAEQHA 677

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + V  ++          A++ I  G+  I+IGTH +    +++ +L LV
Sbjct: 678  QTFSDRFADWPVRVVELSRFRSSKEVADAVQGINDGRVDIVIGTHKILSKDVRFKRLGLV 737

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I   P  R  I
Sbjct: 738  IIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAI 797

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +   +    + E L   L  G +AY++  ++E        +   R   L     + I
Sbjct: 798  KTFVRREDG-STIREALLRELKRGGQAYFLHNEVETIH-----NRRARIEELVPE--ARI 849

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQ
Sbjct: 850  AVAHGQMPERELEQVMKGFYQQRYNVLLCTTIIETGIDVPTANTIVIHRADRFGLAQLHQ 909

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTR---LSVLKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL      ++ N+  R   +  ++    GF +A  DL+ R  GE+
Sbjct: 910  LRGRVGRSHHQAYAYLLTPGEDAITSNAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEV 969

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG  QSG  + +     +++ +L  A +  K    ++PD+ +    +  + L+
Sbjct: 970  LGESQSGNIQEIGFS--MYNEMLNEAVRALKA--GEEPDMDAPFNLACEVNLH 1018


>gi|258424461|ref|ZP_05687340.1| transcription-repair coupling factor [Staphylococcus aureus A9635]
 gi|257845330|gb|EEV69365.1| transcription-repair coupling factor [Staphylococcus aureus A9635]
          Length = 1168

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 232/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|253730971|ref|ZP_04865136.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus USA300_TCH959]
 gi|253725283|gb|EES94012.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus USA300_TCH959]
          Length = 1168

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 232/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|21282187|ref|NP_645275.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus MW2]
 gi|49485367|ref|YP_042588.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus MSSA476]
 gi|297207394|ref|ZP_06923833.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus ATCC 51811]
 gi|300910353|ref|ZP_07127806.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus TCH70]
 gi|81827911|sp|Q6GBY5|MFD_STAAS RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|81847858|sp|Q8NXZ6|MFD_STAAW RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|21203623|dbj|BAB94323.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus MW2]
 gi|49243810|emb|CAG42235.1| putative transcription-repair coupling factor [Staphylococcus aureus
            subsp. aureus MSSA476]
 gi|296887957|gb|EFH26851.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus ATCC 51811]
 gi|300888342|gb|EFK83529.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus TCH70]
          Length = 1168

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 232/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|257432620|ref|ZP_05608982.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
            aureus E1410]
 gi|257282485|gb|EEV12618.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
            aureus E1410]
          Length = 1168

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 232/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPENKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|302332216|gb|ADL22409.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus JKD6159]
          Length = 1168

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 232/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|306992405|gb|ADN19319.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 165/451 (36%), Positives = 264/451 (58%), Gaps = 8/451 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  KKI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIKKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  KDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           F N    +L++TTVIEVG++V +A+++I+EN
Sbjct: 416 FVNREIDILVSTTVIEVGVNVPNATVMIVEN 446


>gi|49482730|ref|YP_039954.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus MRSA252]
 gi|295427037|ref|ZP_06819674.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus EMRSA16]
 gi|81828081|sp|Q6GJG8|MFD_STAAR RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|49240859|emb|CAG39526.1| putative transcription-repair coupling factor [Staphylococcus aureus
            subsp. aureus MRSA252]
 gi|295129040|gb|EFG58669.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus EMRSA16]
          Length = 1168

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 232/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|320547719|ref|ZP_08042004.1| transcription-repair coupling factor [Streptococcus equinus ATCC
           9812]
 gi|320447794|gb|EFW88552.1| transcription-repair coupling factor [Streptococcus equinus ATCC
           9812]
          Length = 1165

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 147/452 (32%), Positives = 235/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +  + ++   +  +  
Sbjct: 555 KLNDGRFQKTKQKVSKQVEDIADDLLKLYA--ERSQMKGFAFSPDDDLQREFDDDFAYVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM +   M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TEDQLRSIKEIKHDMEEAKPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQH+    +   N  + V +++    +  + + LE++  GQ  IIIGTH L    +++ 
Sbjct: 673 AQQHFTNFSERFDNYPVEVAVLSRFQSKKEQNETLEKLKQGQVDIIIGTHRLLSKDVEFA 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + +++  +++           ++ + L E 
Sbjct: 793 NRYPVQTYVLETN-PGLIREAIIREMDRGGQVFYVYNRVDTID--------QKVSELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F  G   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLMDFIEGVYDVLVATTIIETGVDISNVNTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKNLTEVSEKRLDAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEEA 993


>gi|257424615|ref|ZP_05601043.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus 55/2053]
 gi|257427281|ref|ZP_05603682.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus 65-1322]
 gi|257429918|ref|ZP_05606304.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
            aureus 68-397]
 gi|257435524|ref|ZP_05611574.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus M876]
 gi|282903089|ref|ZP_06310981.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus C160]
 gi|282904878|ref|ZP_06312738.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus Btn1260]
 gi|282907825|ref|ZP_06315663.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus WW2703/97]
 gi|282910141|ref|ZP_06317947.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus WBG10049]
 gi|282913331|ref|ZP_06321122.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus M899]
 gi|282918284|ref|ZP_06326024.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus C427]
 gi|282923035|ref|ZP_06330721.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus C101]
 gi|283957293|ref|ZP_06374751.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus A017934/97]
 gi|293500380|ref|ZP_06666232.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus 58-424]
 gi|293509318|ref|ZP_06668034.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus M809]
 gi|293515907|ref|ZP_06670597.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus M1015]
 gi|297591586|ref|ZP_06950223.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus MN8]
 gi|257272642|gb|EEV04762.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus 55/2053]
 gi|257275932|gb|EEV07400.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus 65-1322]
 gi|257279434|gb|EEV10029.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
            aureus 68-397]
 gi|257285161|gb|EEV15278.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus M876]
 gi|282314554|gb|EFB44941.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus C101]
 gi|282317850|gb|EFB48219.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus C427]
 gi|282322802|gb|EFB53122.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus M899]
 gi|282325989|gb|EFB56295.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus WBG10049]
 gi|282328301|gb|EFB58576.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus WW2703/97]
 gi|282331995|gb|EFB61504.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus Btn1260]
 gi|282596515|gb|EFC01475.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus C160]
 gi|283791217|gb|EFC30027.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus A017934/97]
 gi|290921315|gb|EFD98373.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus M1015]
 gi|291096340|gb|EFE26600.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus 58-424]
 gi|291467863|gb|EFF10373.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus M809]
 gi|297575455|gb|EFH94172.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus MN8]
 gi|312436407|gb|ADQ75478.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus TCH60]
          Length = 1168

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 232/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|87160796|ref|YP_493190.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus USA300_FPR3757]
 gi|88194263|ref|YP_499055.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus NCTC 8325]
 gi|161508743|ref|YP_001574402.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus USA300_TCH1516]
 gi|253735238|ref|ZP_04869403.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus TCH130]
 gi|258452816|ref|ZP_05700811.1| transcription-repair coupling factor [Staphylococcus aureus A5948]
 gi|262049988|ref|ZP_06022847.1| transcription-repair coupling factor [Staphylococcus aureus D30]
 gi|282925578|ref|ZP_06333231.1| transcription-repair coupling factor [Staphylococcus aureus A9765]
 gi|284023512|ref|ZP_06377910.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus 132]
 gi|294850363|ref|ZP_06791096.1| transcription-repair coupling factor [Staphylococcus aureus A9754]
 gi|123098062|sp|Q2G0R8|MFD_STAA8 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|123722412|sp|Q2FJD8|MFD_STAA3 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|87126770|gb|ABD21284.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus USA300_FPR3757]
 gi|87201821|gb|ABD29631.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus NCTC 8325]
 gi|160367552|gb|ABX28523.1| transcription-repair coupling factor helicase [Staphylococcus aureus
            subsp. aureus USA300_TCH1516]
 gi|253726798|gb|EES95527.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus TCH130]
 gi|257859502|gb|EEV82355.1| transcription-repair coupling factor [Staphylococcus aureus A5948]
 gi|259161923|gb|EEW46506.1| transcription-repair coupling factor [Staphylococcus aureus D30]
 gi|282592482|gb|EFB97494.1| transcription-repair coupling factor [Staphylococcus aureus A9765]
 gi|294822787|gb|EFG39223.1| transcription-repair coupling factor [Staphylococcus aureus A9754]
 gi|315196186|gb|EFU26542.1| transcription-repair coupling factor helicase [Staphylococcus aureus
            subsp. aureus CGS01]
 gi|320139410|gb|EFW31288.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus MRSA131]
 gi|320144187|gb|EFW35955.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus MRSA177]
 gi|329729764|gb|EGG66161.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus 21189]
          Length = 1168

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 232/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|119484480|ref|ZP_01619097.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106]
 gi|119457954|gb|EAW39077.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106]
          Length = 1147

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 148/454 (32%), Positives = 242/454 (53%), Gaps = 21/454 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +     + LA  +  L  ++  +     PI  +    Q++  + P+ PT  Q  
Sbjct: 538 WEKTKNKVQKAIKKLAVDLLKLYAQRAQQTGYNYPI--DTPWQQELEDSFPYQPTPDQLK 595

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           + +D+ +DM  +  M R++ GDVG GKT V + A+  AV AG Q   +AP  IL QQHY 
Sbjct: 596 STQDVKRDMEAERPMDRLVCGDVGFGKTEVGIRAIFKAVTAGKQVAFLAPTTILTQQHYH 655

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            +K+      I + ++      + +R+  +R+  G+  II+GTH++   +IQ+  L L++
Sbjct: 656 TLKERFAPYPIEIALLNRFRTTSEKREIQQRLTTGEIDIIVGTHSILSKTIQFKDLGLLV 715

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ RFGV Q+ K+    T   VL +TATPIPRTL +   G  ++S IT  P  R+PIK
Sbjct: 716 VDEEQRFGVNQKEKIKTLKTHVDVLTLTATPIPRTLYMALSGIREMSLITTPPPSRRPIK 775

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T + P N  + +   ++  L  G + +++ P+IE  +E + +             ++ IA
Sbjct: 776 THLSPYND-ETIRTAIRQELDRGGQVFYVVPRIEGIEEKSSKIR-------EMVPSARIA 827

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M+  + ES+M +F  G  ++L+ TT+IE G+D+   + I+IE+A  FGLAQL+QL
Sbjct: 828 VAHGQMNAAELESIMLTFNAGEAEILVCTTIIESGLDIPRVNTILIEDAHRFGLAQLYQL 887

Query: 580 RGRVGRGEEISSCILLYH------PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
           RGRVGR    +   L Y         LS ++  RL  ++       G+ +A  DL+ R  
Sbjct: 888 RGRVGRSGVQAHAWLFYPVNADGRAALSDDARKRLRAIQEFTQLGSGYQLAMRDLEIRGA 947

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G+ILG +QSG    +     L+  +LE + ++ K
Sbjct: 948 GDILGAEQSGQMDVIGFD--LYTEMLEESIREIK 979


>gi|57650044|ref|YP_185435.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus COL]
 gi|151220678|ref|YP_001331500.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus str. Newman]
 gi|81859647|sp|Q5HIH2|MFD_STAAC RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|57284230|gb|AAW36324.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus COL]
 gi|150373478|dbj|BAF66738.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus str. Newman]
          Length = 1168

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 232/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|148266962|ref|YP_001245905.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus JH9]
 gi|150393008|ref|YP_001315683.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus JH1]
 gi|257794256|ref|ZP_05643235.1| transcription-repair coupling factor [Staphylococcus aureus A9781]
 gi|258420806|ref|ZP_05683742.1| transcription-repair coupling factor [Staphylococcus aureus A9719]
 gi|258448018|ref|ZP_05696148.1| transcription-repair coupling factor [Staphylococcus aureus A6224]
 gi|258453836|ref|ZP_05701809.1| transcription-repair coupling factor [Staphylococcus aureus A5937]
 gi|295407393|ref|ZP_06817190.1| transcription-repair coupling factor [Staphylococcus aureus A8819]
 gi|297246473|ref|ZP_06930313.1| transcription-repair coupling factor [Staphylococcus aureus A8796]
 gi|147740031|gb|ABQ48329.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus JH9]
 gi|149945460|gb|ABR51396.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus JH1]
 gi|257788228|gb|EEV26568.1| transcription-repair coupling factor [Staphylococcus aureus A9781]
 gi|257843198|gb|EEV67611.1| transcription-repair coupling factor [Staphylococcus aureus A9719]
 gi|257858708|gb|EEV81581.1| transcription-repair coupling factor [Staphylococcus aureus A6224]
 gi|257864007|gb|EEV86762.1| transcription-repair coupling factor [Staphylococcus aureus A5937]
 gi|285816202|gb|ADC36689.1| Transcription-repair coupling factor [Staphylococcus aureus 04-02981]
 gi|294967750|gb|EFG43782.1| transcription-repair coupling factor [Staphylococcus aureus A8819]
 gi|297176660|gb|EFH35922.1| transcription-repair coupling factor [Staphylococcus aureus A8796]
 gi|312828998|emb|CBX33840.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus ECT-R 2]
 gi|315128631|gb|EFT84634.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus CGS03]
 gi|329725040|gb|EGG61535.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus 21172]
          Length = 1168

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 150/453 (33%), Positives = 233/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++N+  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTENAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|298693833|gb|ADI97055.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus ED133]
          Length = 1168

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 232/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|121595462|ref|YP_987358.1| transcription-repair coupling factor [Acidovorax sp. JS42]
 gi|120607542|gb|ABM43282.1| transcription-repair coupling factor [Acidovorax sp. JS42]
          Length = 1164

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 158/520 (30%), Positives = 240/520 (46%), Gaps = 31/520 (5%)

Query: 183  PVLPEWIEKDLLQK---------KSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDE 232
            P L E++  +   K                   +    P  K    +W    R+      
Sbjct: 513  PALQEFLHLEYADKAVLYVPVSQLQLIGRYTGVSADEAPLHKLGSGQWEKAKRKAAEQVR 572

Query: 233  LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
              A ++  +  R+  ++             ++   +  F  T  Q++AI  ++QDM    
Sbjct: 573  DAAAELLNIYARRAAREG--HAFRYSPNDYEQFANDFGFEETADQKAAIHAVVQDMISPR 630

Query: 293  RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
             M R++ GDVG GKT VAL A   AV  G Q   +AP  +LA+QHY  +        + V
Sbjct: 631  PMDRLVCGDVGFGKTEVALRACFVAVAGGKQVAFLAPTTLLAEQHYRTLSDRFSKWPVKV 690

Query: 353  EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
              ++          A++ IA G   I++GTH L  +S Q+  L L+I+DE+HRFGV+ + 
Sbjct: 691  AEVSRFRSGKEITAAVKGIADGTVDIVVGTHKLLSESTQFKNLGLLIIDEEHRFGVRHKE 750

Query: 413  KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
             + Q      VL +TATPIPRT+ +   G  D+S I   P  R  IKT +        + 
Sbjct: 751  AMKQFRAEVDVLTLTATPIPRTMGMALEGLRDLSVIATAPQRRLAIKTFVRNEG-TGVIR 809

Query: 473  ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKE 531
            E +   L  G + Y++  ++E  +         R   L E    + IA+ HG+M + + E
Sbjct: 810  EAVLRELKRGGQCYFLHNEVETIE--------NRRQKLEEILPEARIAVAHGQMPERELE 861

Query: 532  SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             VM  F      +L+ +T+IE GIDV  A+ III  A+ FGLAQLHQLRGRVGR    + 
Sbjct: 862  RVMRDFVAQRYNILLCSTIIETGIDVPTANTIIISRADKFGLAQLHQLRGRVGRSHHQAY 921

Query: 592  CILLYH--PPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              L+      L+K +  RL     ++    GF +A  DL+ R  GE+LG  QSG    + 
Sbjct: 922  AYLMVPDIDGLTKQAQQRLDAIQQMEELGSGFYLAMHDLEIRGAGEVLGESQSGNMMEIG 981

Query: 647  AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             Q  L++ +L  A K  K    ++PDL +    +  I L+
Sbjct: 982  FQ--LYNEMLAEAVKQLKA--GKEPDLLAPMQAATDINLH 1017


>gi|323438735|gb|EGA96475.1| transcription-repair coupling factor [Staphylococcus aureus O11]
 gi|323442053|gb|EGA99688.1| transcription-repair coupling factor [Staphylococcus aureus O46]
          Length = 1168

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 232/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|82750210|ref|YP_415951.1| transcription-repair coupling factor [Staphylococcus aureus RF122]
 gi|123768536|sp|Q2YVY2|MFD_STAAB RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|82655741|emb|CAI80140.1| transcription-repair coupling factor [Staphylococcus aureus RF122]
          Length = 1168

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 232/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|329731067|gb|EGG67439.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus 21193]
          Length = 1168

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 232/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTSKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|119478459|ref|ZP_01618444.1| transcription-repair coupling protein Mfd [marine gamma
            proteobacterium HTCC2143]
 gi|119448545|gb|EAW29792.1| transcription-repair coupling protein Mfd [marine gamma
            proteobacterium HTCC2143]
          Length = 1152

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 147/474 (31%), Positives = 232/474 (48%), Gaps = 19/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+       +A ++  +  R+  +      + +  +  +      PF  T  QE
Sbjct: 551  QWQKAKRKAAEKIRDVAAELLDIYARRAARPGQ--SLEIPDQSYEAFSAGFPFEETPDQE 608

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAIK ++ D+       R++ GDVG GKT VA+ A   AV    Q  I+ P  +LAQQH+
Sbjct: 609  SAIKAVVADLQSDAATDRLVCGDVGFGKTEVAMRAAFIAVHNSKQVAILVPTTLLAQQHF 668

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  K    +  + +++++     A +   L + A G+  I+IGTH L Q  ++Y  L L+
Sbjct: 669  ESFKDRFADWPVSIDVLSRFRSSAEQADVLAKTAAGKIDILIGTHKLLQKDVKYSDLGLL 728

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  +
Sbjct: 729  IIDEEHRFGVRQKEQLKSLRSEVDILTLTATPIPRTLNMAISGMRDLSIIATPPARRLSV 788

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +   +    + E +   +  G + Y++  +++  +            +L       I
Sbjct: 789  KTFVRQSDN-ATIKEAILREILRGGQVYYLHNEVKTIE-----QTSRELQALVPEV--RI 840

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   E VM  F +    LL+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQ
Sbjct: 841  GIGHGQMPERQLEQVMSDFYHKRFNLLLCTTIIETGIDVPSANTILINRADKFGLAQLHQ 900

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL---KNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   +L      ++ ++  RL  +   +    GF +A  DL+ R  GE+
Sbjct: 901  LRGRVGRSHHQAYAYMLTPDAKNMTGDAEKRLEAISQAEELGSGFTLATHDLEIRGAGEL 960

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            LG  QSG    +     L+  +LE A +  K    ++ DL         + L L
Sbjct: 961  LGDGQSGQIHNI--GFTLYMEMLERAVRAIKD--GKEVDLEGALDPGSEVNLRL 1010


>gi|260893903|ref|YP_003240000.1| transcription-repair coupling factor [Ammonifex degensii KC4]
 gi|260866044|gb|ACX53150.1| transcription-repair coupling factor [Ammonifex degensii KC4]
          Length = 1123

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 139/451 (30%), Positives = 225/451 (49%), Gaps = 17/451 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW             +A ++  L   ++     G   + +    ++     P+  T  Q 
Sbjct: 532 EWKRVRARVKQAATDVARELLRLYAMRETA--KGHAFSPDTPWQREFEAAFPYEETPDQL 589

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI D+  DM +   M R++ GDVG GKT +AL A   AV  G Q  ++ P  ILAQQHY
Sbjct: 590 RAIADVKADMEKPRPMDRLICGDVGFGKTEIALRAAFKAVMDGKQVAVLVPTTILAQQHY 649

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                      I V  +      A +R+ ++ +  G   I+IGTH L Q+ +Q+  L LV
Sbjct: 650 RTFSSRFAPYPIRVAWLCRFQTPAEQREVIKGLKAGTIDIVIGTHRLLQNDVQFRDLGLV 709

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV Q+ KL        VL +TATPIPRTL ++ +G  D S +T  P  R P+
Sbjct: 710 IIDEEQRFGVLQKEKLKLLRKEVDVLTLTATPIPRTLYMSLVGLRDTSCLTTPPPDRLPV 769

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  +    + E ++  L+ G + Y++  ++    E            L     + +
Sbjct: 770 ETYVVEED-PAIIREAIRRELARGGQVYFVYNRVAGIVEVAN-----WVKHLVPE--ARV 821

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HG+M +   E +M  F +    +L+ATT++E G+D+ + + +I+++A+  GL+QL+Q
Sbjct: 822 AYAHGQMPEAALERIMLDFIDHKYDVLVATTIVENGLDIGNVNTLIVKDADQLGLSQLYQ 881

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGR   ++    LY     +++ +  RL  +K+      GF +A+ DL+ R  G +
Sbjct: 882 LRGRVGRTNRLAYAYFLYRRDKIINEAAKARLRAIKDFTSLGAGFKVAKRDLEIRGAGNL 941

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG +Q G         EL+  LL+ A K+ K
Sbjct: 942 LGTEQHGHI--QAVGLELYCRLLQEAIKELK 970


>gi|332706023|ref|ZP_08426096.1| transcription-repair coupling factor mfd [Lyngbya majuscula 3L]
 gi|332355283|gb|EGJ34750.1| transcription-repair coupling factor mfd [Lyngbya majuscula 3L]
          Length = 1295

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 147/451 (32%), Positives = 241/451 (53%), Gaps = 19/451 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W           + +A  +  L  ++  +     P   +    Q++  + P+ PT  Q  
Sbjct: 687  WEKTKNRVRKSIKKVAVDLLKLYAQRAQQSGYCFP--ADSPWQQELEDSFPYQPTPDQLK 744

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+D+ +D+     M R++ GDVG GKT VA+ A+  AV +  Q   +AP  IL QQHY 
Sbjct: 745  AIQDVKRDLESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTSNKQVAFLAPTTILTQQHYH 804

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             IK+      I V ++        +R  L+R+  G+  +++GTH L   S+ + +L L++
Sbjct: 805  TIKERFSPYPINVGLLNRFRSPQEKRDILQRLKTGELDVVVGTHQLLGKSVTFRELGLLV 864

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV Q+ K+    T   VL ++ATPIPRTL ++  G  ++S IT  P  R+PIK
Sbjct: 865  IDEEQRFGVNQKEKIKSFKTQVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIK 924

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH-FTSSI 518
            T + P  + + V   +++ L  G + +++ P++E  +        E    L E    + I
Sbjct: 925  THLSPY-KPEAVRTAIRMELDRGGQVFYVVPRVEGIE--------EVAAELREMILEARI 975

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            AI HG++   + ES+M +F NG   +L+ TT+IE G+D+   + I+IE+A  FGLAQL+Q
Sbjct: 976  AIAHGQLDPAELESIMLTFSNGEADILVCTTIIESGLDIPRVNTIVIEDAHKFGLAQLYQ 1035

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LLY     LS+ +  RL  ++       G+L+A  D++ R  G +
Sbjct: 1036 LRGRVGRAGIQAHAWLLYPNQKVLSEAAKKRLRAIQEFTQLGSGYLLATRDMEIRGVGNL 1095

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            LG++QSG  + +     L+  +L+ A K+ +
Sbjct: 1096 LGVEQSGQMEAIGFD--LYMEMLQEAIKEIQ 1124


>gi|258446110|ref|ZP_05694271.1| transcription-repair coupling factor [Staphylococcus aureus A6300]
 gi|257855087|gb|EEV78029.1| transcription-repair coupling factor [Staphylococcus aureus A6300]
          Length = 1168

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 150/453 (33%), Positives = 233/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTSKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++N+  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTENAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|258429620|ref|ZP_05688294.1| transcription-repair-coupling factor [Staphylococcus aureus A9299]
 gi|257849679|gb|EEV73646.1| transcription-repair-coupling factor [Staphylococcus aureus A9299]
          Length = 1168

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 232/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|157150453|ref|YP_001451365.1| transcription-repair coupling factor [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075247|gb|ABV09930.1| transcription-repair coupling factor [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 1167

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 238/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + + +   +   + P+  
Sbjct: 559 KLNDGRFQKTKQKVQHQVEDIADDLIKLYA--ERSQLEGFSFSSDDENQIEFDNDFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +I++I +DM  K  M R+L GDVG GKT VA+ A   AV    Q  I+ P  +L
Sbjct: 617 TEDQLRSIQEIKKDMESKQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAILVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  + V++++    +A + + LE +  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHYTNFKERFNDFAVNVDVLSRFRTKAEQSETLEALKKGQVDIIIGTHRLLSQDVEFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++  +        ++   L E 
Sbjct: 797 NRYPVQTYVLESNPT-IIRDAILREIDRGGQVYYLYNKVDTIE--------QKVAELKEL 847

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 848 IPEASIGFVHGQMSEIRLENTLIDFINGEYDVLVTTTIIETGVDIPNANTLFIENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+    +Y P   L++ +  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYFMYRPDKTLTEVAEKRLEAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGASQSGFID--SVGFEMYSQLLEEA 997


>gi|254480585|ref|ZP_05093832.1| transcription-repair coupling factor [marine gamma proteobacterium
            HTCC2148]
 gi|214039168|gb|EEB79828.1| transcription-repair coupling factor [marine gamma proteobacterium
            HTCC2148]
          Length = 1154

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 151/480 (31%), Positives = 241/480 (50%), Gaps = 19/480 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +W    R+       +A Q+  +  R++ +   G    ++     +     PF 
Sbjct: 546  HTLGSEQWDKARRKASEKANDIAAQLLEVYARREAR--TGYAFTLDQDKYSQFSAAFPFE 603

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  QE  I+ +++DM     M R++ GDVG GKT VA+ A   A +   Q  ++ P  +
Sbjct: 604  ETPDQELTIRAVVEDMCSPRVMDRLVCGDVGFGKTEVAMRAAFIASQNKKQVAVLVPTTL 663

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LAQQH+        +  + VE+++     A  +   +RIA G+  I++GTH L Q   ++
Sbjct: 664  LAQQHFSSFCDRFADWPVNVEVVSRFKSAAQVKDVSKRIADGKIDILVGTHKLLQSDFRF 723

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+HRFGV+Q+  +    +   +L +TATPIPRTL +   G  D+S I   P
Sbjct: 724  NDLGLLIIDEEHRFGVKQKEAIKALRSEVDILTLTATPIPRTLNMALGGMRDLSIIATPP 783

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R  IKT +   N I  V E +      G + Y++  +++  +ES  +        L  
Sbjct: 784  ARRLSIKTFVREHN-IALVKEAVLRETLRGGQVYYLHNEVKSIEESARK-----LRELVP 837

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                ++ + HG+M + + E VM SF +    +L+ TT+IE GID+ +A+ IIIE A+ FG
Sbjct: 838  DL--NVGVAHGQMRETELEHVMSSFYHQHNHILMCTTIIETGIDIPNANTIIIERADRFG 895

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL  P   ++ ++  RL  ++   D   G+L+A  DL+ 
Sbjct: 896  LAQLHQLRGRVGRSHHQAYAYLLTPPRSAITADAGKRLEAIEAAGDLGAGYLLATHDLEI 955

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            R  GE+LG +QSG          L+  +LE A    K    + PD+ +       + L++
Sbjct: 956  RGAGELLGDEQSGQIH--SVGFSLYMEMLERAVASLKR--GEIPDVDAPLDAGTEVNLHI 1011


>gi|239825634|ref|YP_002948258.1| transcription-repair coupling factor [Geobacillus sp. WCH70]
 gi|239805927|gb|ACS22992.1| transcription-repair coupling factor [Geobacillus sp. WCH70]
          Length = 1177

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 133/435 (30%), Positives = 227/435 (52%), Gaps = 15/435 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            + +  + +   G   + + ++ ++     P+  T+ Q  +I++I +DM     M R+L G
Sbjct: 592  IKLYAEREASKGYAFSPDTEMQREFEAAFPYQETEDQLRSIEEIKRDMESDKPMDRLLCG 651

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   A+  G Q   + P  ILAQQHYE +++  Q   I V ++     
Sbjct: 652  DVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGFPINVGLLNRFRT 711

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            +  + + ++ +  G   ++IGTH L    +Q+  L L+I+DE+ RFGV  + K+ Q    
Sbjct: 712  RKQQAETIKGLKDGTIDMVIGTHRLLSKDVQFKDLGLLIIDEEQRFGVTHKEKIKQLKAN 771

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL +TATPIPRTL ++ +G  D+S I   P  R P++T ++     + + E ++  L+
Sbjct: 772  IDVLTLTATPIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEY-TPELIREAIERELA 830

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
               + +++  +IE+          E  + L     + +   HGRM++ + ES M +F  G
Sbjct: 831  RDGQVFFLYNRIEDIDA-----KAEEISQLVPE--ARVTYAHGRMTENELESTMLAFLEG 883

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
               +L+ TT+IE G+D+ + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y    
Sbjct: 884  QYDVLVTTTIIETGVDIPNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDK 943

Query: 600  -LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             L++++  RL  +K       GF IA  DL  R  G ILG +Q G    +     L+  +
Sbjct: 944  VLNEDAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFD--LYSQM 1001

Query: 656  LEIARKDAKHILTQD 670
            L+ A +  K I  ++
Sbjct: 1002 LKEAIEKRKGIKQEE 1016


>gi|15923493|ref|NP_371027.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus Mu50]
 gi|15926180|ref|NP_373713.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus N315]
 gi|156978831|ref|YP_001441090.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus Mu3]
 gi|253315228|ref|ZP_04838441.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus str. CF-Marseille]
 gi|255005296|ref|ZP_05143897.2| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus Mu50-omega]
 gi|282895111|ref|ZP_06303331.1| transcription-repair coupling factor [Staphylococcus aureus A8117]
 gi|81832560|sp|Q7A7B2|MFD_STAAN RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|81855990|sp|Q99WA0|MFD_STAAM RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|13700393|dbj|BAB41691.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus N315]
 gi|14246271|dbj|BAB56665.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus Mu50]
 gi|156720966|dbj|BAF77383.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus Mu3]
 gi|282762529|gb|EFC02669.1| transcription-repair coupling factor [Staphylococcus aureus A8117]
          Length = 1168

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 232/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|222111676|ref|YP_002553940.1| transcription-repair coupling factor [Acidovorax ebreus TPSY]
 gi|221731120|gb|ACM33940.1| transcription-repair coupling factor [Acidovorax ebreus TPSY]
          Length = 1167

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 158/520 (30%), Positives = 240/520 (46%), Gaps = 31/520 (5%)

Query: 183  PVLPEWIEKDLLQK---------KSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDE 232
            P L E++  +   K                   +    P  K    +W    R+      
Sbjct: 516  PALQEFLHLEYADKAVLYVPVSQLQLIGRYTGVSADEAPLHKLGSGQWEKAKRKAAEQVR 575

Query: 233  LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
              A ++  +  R+  ++             ++   +  F  T  Q++AI  ++QDM    
Sbjct: 576  DAAAELLNIYARRAAREG--HAFRYSPNDYEQFANDFGFEETADQKAAIHAVVQDMISPR 633

Query: 293  RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
             M R++ GDVG GKT VAL A   AV  G Q   +AP  +LA+QHY  +        + V
Sbjct: 634  PMDRLVCGDVGFGKTEVALRACFVAVAGGKQVAFLAPTTLLAEQHYRTLSDRFSKWPVKV 693

Query: 353  EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
              ++          A++ IA G   I++GTH L  +S Q+  L L+I+DE+HRFGV+ + 
Sbjct: 694  AEVSRFRSGKEITAAVKGIADGTVDIVVGTHKLLSESTQFKNLGLLIIDEEHRFGVRHKE 753

Query: 413  KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
             + Q      VL +TATPIPRT+ +   G  D+S I   P  R  IKT +        + 
Sbjct: 754  AMKQFRAEVDVLTLTATPIPRTMGMALEGLRDLSVIATAPQRRLAIKTFVRNEG-TGVIR 812

Query: 473  ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKE 531
            E +   L  G + Y++  ++E  +         R   L E    + IA+ HG+M + + E
Sbjct: 813  EAVLRELKRGGQCYFLHNEVETIE--------NRRQKLEEILPEARIAVAHGQMPERELE 864

Query: 532  SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             VM  F      +L+ +T+IE GIDV  A+ III  A+ FGLAQLHQLRGRVGR    + 
Sbjct: 865  RVMRDFVAQRYNILLCSTIIETGIDVPTANTIIISRADKFGLAQLHQLRGRVGRSHHQAY 924

Query: 592  CILLYH--PPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
              L+      L+K +  RL     ++    GF +A  DL+ R  GE+LG  QSG    + 
Sbjct: 925  AYLMVPDIDGLTKQAQQRLDAIQQMEELGSGFYLAMHDLEIRGAGEVLGESQSGNMMEIG 984

Query: 647  AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             Q  L++ +L  A K  K    ++PDL +    +  I L+
Sbjct: 985  FQ--LYNEMLAEAVKQLKA--GKEPDLLAPMQAATDINLH 1020


>gi|315644370|ref|ZP_07897510.1| transcription-repair coupling factor [Paenibacillus vortex V453]
 gi|315280247|gb|EFU43539.1| transcription-repair coupling factor [Paenibacillus vortex V453]
          Length = 1175

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 140/463 (30%), Positives = 235/463 (50%), Gaps = 17/463 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT    +  +  + +A  +  L   +Q     G     +    Q+     P+  T  Q 
Sbjct: 561  EWTRVKNKVRSSVQDIADDLIKLYAERQSA--PGYGFEKDTSEQQEFEDMFPYDETPDQL 618

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI +I +DM Q   M R+L GDVG GKT VA+ A   +   G Q  ++ P  ILAQQHY
Sbjct: 619  RAITEIKKDMEQNRPMDRLLCGDVGYGKTEVAVRAAFKSAIEGKQVAVLVPTTILAQQHY 678

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  ++   N  I +++++    +  + + ++++  G   I+IGTH L    I +  L L+
Sbjct: 679  ETFRERFANYPINIQVLSRFRSRKEQNETIKKVKQGSVDILIGTHRLLSQDIVFKDLGLL 738

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 739  IVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 798

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  ++   V E ++  L+ G + Y++  +++  +E   +  +           + +
Sbjct: 799  QTYVVEHSQT-LVREAIERELARGGQVYYLYNRVQGIQEMAAQISM-------LVPEARV 850

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 851  GVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQ 910

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 911  LRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLSIRGAGNL 970

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            LG +Q G         +L+  +L    +  K  +  +P L + 
Sbjct: 971  LGAEQHGFI--ASVGFDLYSQMLAEEIQKRKVSMLGEPALPTK 1011


>gi|289208374|ref|YP_003460440.1| transcription-repair coupling factor [Thioalkalivibrio sp. K90mix]
 gi|288944005|gb|ADC71704.1| transcription-repair coupling factor [Thioalkalivibrio sp. K90mix]
          Length = 1157

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 151/497 (30%), Positives = 236/497 (47%), Gaps = 22/497 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     +  H P  +    +W    R+       +A ++  +  R+  K+       
Sbjct: 535  HLISRYTGADAEHAPLHRLGSEQWNRARRKAAEKARDVAAELLEVHARRAAKQGT--AFA 592

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             E           PF  T  Q  AI  +L DM+    M R++ GDVG GKT VA+ A   
Sbjct: 593  TETPEYHAFAAAFPFEETADQLQAIDAVLTDMADTRPMDRVICGDVGFGKTEVAMRAAFV 652

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AV+   Q  ++ P  +LAQQH++       +  + +E ++       +   LE +  G+ 
Sbjct: 653  AVQNNRQVAVLVPTTLLAQQHHQNFSDRFADWPVRIESLSRFRSAKQQAAVLEGLKEGKV 712

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L Q ++ +  L LVIVDE+ RFGV+ +  L +      +L MTATPIPRTL 
Sbjct: 713  DIVIGTHKLLQSNLDFSNLGLVIVDEEQRFGVRHKEALKRLRAEVDMLTMTATPIPRTLN 772

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEK 495
            +   G  D+S IT  P  R  IKT +   N  D +I E     +  G + Y++  ++   
Sbjct: 773  MALSGLRDLSVITTPPRERLAIKTFVNEWN--DAIIQEACLREIRRGGQVYFVHNEVNTI 830

Query: 496  KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            +      + E+  +L     + I I HG+M + + E VM  F +    +L+ +T+IE GI
Sbjct: 831  E-----RMAEQIRALLPG--ARIGIAHGQMRERELEQVMLDFYHRRYNILVCSTIIETGI 883

Query: 556  DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN 613
            DV  A+ I++  A+  GLAQ+HQLRGRVGR    +   L+  P   +S ++  RL  + +
Sbjct: 884  DVPTANTIVMNRADKLGLAQMHQLRGRVGRSHHRAYAYLVTPPEKAMSADARKRLEAIAS 943

Query: 614  TED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
             ED   GF +A  DL+ R  GE+LG +QSG          +++ LL  A    +    + 
Sbjct: 944  LEDLGVGFTLASHDLEIRGAGELLGDEQSGQI--QEVGFSMYNDLLNRAVNALRS--GKM 999

Query: 671  PDLTSVRGQSIRILLYL 687
            P+L +       + L L
Sbjct: 1000 PELETPETPGTEVELGL 1016


>gi|256618332|ref|ZP_05475178.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
            4200]
 gi|256597859|gb|EEU17035.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
            4200]
          Length = 1179

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 688  ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLLSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 808  QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
            LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 980  LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 1012


>gi|269202123|ref|YP_003281392.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus ED98]
 gi|296276156|ref|ZP_06858663.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus MR1]
 gi|262074413|gb|ACY10386.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus ED98]
          Length = 1168

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 232/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|306992311|gb|ADN19272.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 445

 Score =  357 bits (915), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 166/450 (36%), Positives = 265/450 (58%), Gaps = 8/450 (1%)

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SR 181
             + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL   
Sbjct: 1   YIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDY 60

Query: 182 LPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL 241
           +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+AL 
Sbjct: 61  VQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMALF 117

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++QGD
Sbjct: 118 LMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGD 175

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  
Sbjct: 176 VGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISP 235

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K   P
Sbjct: 236 SNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENP 295

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +
Sbjct: 296 DVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKK 355

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKN 539
           G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F N
Sbjct: 356 GRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKVMEEFVN 415

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           G   +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 416 GKIDILVSTTVIEVGVNVPNATVMIVENAE 445


>gi|228471775|ref|ZP_04056548.1| transcription-repair coupling factor [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228276928|gb|EEK15623.1| transcription-repair coupling factor [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 1110

 Score =  357 bits (915), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 141/451 (31%), Positives = 231/451 (51%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++  A  + +A  +  L  +++    +G     +  + +++  +  +  T  Q  
Sbjct: 502 WKALKQKTKARVKQIAFNLIQLYAKRREA--VGYAFAPDSYLQKELEASFIYEDTPDQSK 559

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  ++ QDM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  ILA QHY+
Sbjct: 560 ATLEVKQDMERARPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHYQ 619

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +   + VE +        + + L  +A G+  I+IGTH +  + ++Y  L L++
Sbjct: 620 TFCERLKELPVRVEYLNRFRTAKEKNQVLADLASGKVDILIGTHQIVNEKVKYKDLGLLV 679

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S IT  P  R PI+
Sbjct: 680 IDEEQKFGVAVKDKLKTLRENIDVLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIE 739

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + II  N  + + + +   L  G + ++I  ++E  KE            L     + I 
Sbjct: 740 SQIISFNE-EVIRDGIAYELQRGGQVFFIHNRVENIKEVAG-----MIQRLIPD--AKIG 791

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E VM +F NG   +L+ATT+IE G+DV +A+ I I NA+HFGL+ LHQ+
Sbjct: 792 IGHGQMEGKQLEEVMLAFINGDYDILVATTIIESGLDVPNANTIFIHNAQHFGLSDLHQM 851

Query: 580 RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +      L ++S  R+  +    D   G  IA +DL+ R  G++L
Sbjct: 852 RGRVGRSNKKAFCYFITPNLSELPEDSRKRMQAIAQFSDLGSGIHIAMKDLEIRGAGDLL 911

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG    +      +  +L+ A  + K 
Sbjct: 912 GGEQSGFINDIGFD--AYQKILQEAVTELKE 940


>gi|295401980|ref|ZP_06811942.1| transcription-repair coupling factor [Geobacillus thermoglucosidasius
            C56-YS93]
 gi|312109202|ref|YP_003987518.1| transcription-repair coupling factor [Geobacillus sp. Y4.1MC1]
 gi|294975982|gb|EFG51598.1| transcription-repair coupling factor [Geobacillus thermoglucosidasius
            C56-YS93]
 gi|311214303|gb|ADP72907.1| transcription-repair coupling factor [Geobacillus sp. Y4.1MC1]
          Length = 1177

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 138/449 (30%), Positives = 233/449 (51%), Gaps = 23/449 (5%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            + +  + +   G   + + ++ ++     P+  T+ Q  +I++I +DM     M R+L G
Sbjct: 592  IKLYAEREASKGYAFSPDTEMQREFEAAFPYQETEDQLRSIEEIKRDMESDKPMDRLLCG 651

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   A+  G Q   + P  ILAQQHYE +++  Q   I V ++     
Sbjct: 652  DVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGFPITVGLLNRFRT 711

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            +  + + ++ +  G   ++IGTH L    +Q+  L L+I+DE+ RFGV  + K+ Q    
Sbjct: 712  RKQQAETIKGLKDGTIDMVIGTHRLLSKDVQFKDLGLLIIDEEQRFGVTHKEKIKQLKAN 771

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL +TATPIPRTL ++ +G  D+S I   P  R P++T ++     + V E ++  L+
Sbjct: 772  IDVLTLTATPIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEY-TPELVREAIERELA 830

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
               + +++   IE+          E  + L     + +  +HGRMS+ + ES M +F  G
Sbjct: 831  REGQVFFLYNHIEDIDV-----KAEEISQLVPE--ARVTYVHGRMSETELESTMLAFLEG 883

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
               +L+ TT+IE G+D+ + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y    
Sbjct: 884  QYDVLVTTTIIETGVDIPNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDK 943

Query: 600  -LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             L++ +  RL  +K       GF IA  DL  R  G ILG +Q G    +     L+  +
Sbjct: 944  VLNEAAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNILGAEQHGFIDSVGFD--LYSQM 1001

Query: 656  LEIA--------RKDAKHILTQDPDLTSV 676
            L+ A        +++AKH +T D ++ + 
Sbjct: 1002 LKEAIEKRKGVKQEEAKHEITIDLEVDAY 1030


>gi|146298962|ref|YP_001193553.1| transcription-repair coupling factor [Flavobacterium johnsoniae
           UW101]
 gi|146153380|gb|ABQ04234.1| transcription-repair coupling factor [Flavobacterium johnsoniae
           UW101]
          Length = 1121

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 135/467 (28%), Positives = 235/467 (50%), Gaps = 18/467 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++  A  + +A  +  L  +++ +   G     +  +  ++  +  +  T  Q  
Sbjct: 511 WKVLKQKTKARVKHIAFNLIQLYAKRRLE--KGFQFAPDSYLQNELESSFIYEDTPDQMK 568

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           + +++  DM     M R++ GDVG GKT VA+ A   AV+   Q  ++ P  ILA QHY 
Sbjct: 569 STQEVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDNSKQVAVLVPTTILAYQHYR 628

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + +  +        + + L+ +A G+  I+IGTH L   ++ +  L L+I
Sbjct: 629 TFSERLKDMPVSIGYLNRFRTAKQKTQTLKDLAEGKLDIVIGTHQLVNKNVVFKDLGLLI 688

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL   A     L +TATPIPRTL  + +   D+S IT  P  R PI+
Sbjct: 689 VDEEQKFGVNVKDKLKTIAANVDTLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIE 748

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T ++  N  + + + +   +    + ++I  +IE  KE            L     + + 
Sbjct: 749 TNVVGFNE-EIIRDAISYEIQRNGQVFFINNRIENIKEVAG-----MIQRLVP--NARVG 800

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E +M  F NG   +L+ATT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 801 IGHGQMDGAKLEELMLGFMNGDFDVLVATTIIESGLDVPNANTIFINNANNFGLSDLHQM 860

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   +++++  R+  L+       GF IA +DL+ R  G++L
Sbjct: 861 RGRVGRSNKKAFCYFICPPYSSMTEDARKRIQALEQFSELGSGFNIAMKDLEIRGAGDLL 920

Query: 635 GIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
           G +QSG      F   Q  +++++ E+   + K +  ++ D+ +   
Sbjct: 921 GGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYPEENDIDTKEY 967


>gi|306834606|ref|ZP_07467718.1| transcription-repair coupling factor [Streptococcus bovis ATCC
           700338]
 gi|304423242|gb|EFM26396.1| transcription-repair coupling factor [Streptococcus bovis ATCC
           700338]
          Length = 1169

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 238/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +  + ++   +  F  
Sbjct: 559 KLNDGRFQKTKQKVSKQVEDIADDLLKLYA--ERSQLKGFAFSPDDDLQREFDEDFAFVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM +   M R+L GDVG GKT VA+ A   AV+   Q  ++ P  +L
Sbjct: 617 TEDQLRSIKEIKNDMEEDKPMDRLLVGDVGFGKTEVAMRAAFKAVKDHKQVAVLVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY    +  +N  + V++++    +  +   L+++  GQ  IIIGTH L    + + 
Sbjct: 677 AQQHYTNFSERFENYPVTVDVLSRFRSKKEQNDTLDKLKKGQVDIIIGTHRLLSKDVDFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHISMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + +++  +++           ++ + L E 
Sbjct: 797 NRYPVQTYVLETN-PGLIREAIIREIDRGGQVFYVYNRVDTID--------QKVSELQEL 847

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F +G   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 848 VPEASIGFVHGQMSEIQLENTLMDFIDGVYDVLVATTIIETGVDISNVNTLFIENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+YHP   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLMYHPDKILTEVSEKRLDAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGASQSGFID--SVGFEMYSQLLEEA 997


>gi|258407227|ref|ZP_05680372.1| transcription-repair coupling factor [Staphylococcus aureus A9763]
 gi|257841185|gb|EEV65634.1| transcription-repair coupling factor [Staphylococcus aureus A9763]
          Length = 1168

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 150/453 (33%), Positives = 233/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQVLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++N+  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTENAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|118475824|ref|YP_892975.1| transcription-repair coupling factor [Bacillus thuringiensis str. Al
            Hakam]
 gi|118415049|gb|ABK83468.1| transcription-repair coupling factor [Bacillus thuringiensis str. Al
            Hakam]
          Length = 1207

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 232/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 603  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 660

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 661  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 720

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 721  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 780

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 781  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 840

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 841  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 892

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 893  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 952

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 953  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 1012

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 1013 LGAEQHGFIDSVGFD--LYSQMLKDAIE 1038


>gi|328956571|ref|YP_004373957.1| transcription-repair coupling factor [Carnobacterium sp. 17-4]
 gi|328672895|gb|AEB28941.1| transcription-repair coupling factor [Carnobacterium sp. 17-4]
          Length = 1173

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 143/457 (31%), Positives = 242/457 (52%), Gaps = 17/457 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++     E +A ++  L   ++  +E+G   + +    ++     P++ T+ Q 
Sbjct: 570  EWAKTKKKVATKIEDIADELIELYAARE--QEVGYAFSPDDAYQEEFENAFPYTETEDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S+  +I  DM QK  M R+L GDVG GKT VA+ A+  AV+ G QA  + P  ILAQQHY
Sbjct: 628  SSTAEIKHDMEQKKPMDRLLVGDVGYGKTEVAMRAIFKAVQEGKQAAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +   +  I + +++    +  + + +  +  GQ  I++GTH +    I++  + L+
Sbjct: 688  ETMLQRFADFPIEIGLLSRFRTKKQQNETIAGLKKGQVDIVVGTHRILSKDIEFQDIGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + KL Q      VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 748  IVDEEQRFGVKHKEKLKQLKAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPV 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E ++  ++ G + +++  ++   +       V+    L     + I
Sbjct: 808  QTYVMEQN-LGAIREAVEREMARGGQVFYLYNRVATIE-----KKVDELQQLIPD--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+ +  F  G   +L+ TT+IE G+D+ + + + +ENA+H GL+QL+Q
Sbjct: 860  GYAHGQMTEGQLENTLLQFIEGEYDMLVTTTIIETGVDMPNVNTLFVENADHMGLSQLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    LY P   L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSNRVAYAYFLYQPNKVLNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            LG +Q G    +     L+  +L  A    + I  ++
Sbjct: 980  LGAQQHGFIDSVGFD--LYSEMLSEAVARKRGIDAKE 1014


>gi|295136419|ref|YP_003587095.1| transcription-repair coupling factor [Zunongwangia profunda SM-A87]
 gi|294984434|gb|ADF54899.1| transcription-repair coupling factor [Zunongwangia profunda SM-A87]
          Length = 1126

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 138/459 (30%), Positives = 238/459 (51%), Gaps = 18/459 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++  A  + +A  +  L  +++ +   G     +  +  ++  +  +  T  Q +
Sbjct: 507 WKNLKKKTKARVKHIAYNLIELYAKRRLQ--KGFAYGPDSYLQHELEASFIYEDTPDQST 564

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A + + +DM  +  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  ILA QH++
Sbjct: 565 ATEAVKKDMENERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHHQ 624

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + V+ +        RR+ L  +  G+  IIIGTH L   ++++  L L+I
Sbjct: 625 TFSERLKDLPVTVDYLNRFRTAKERRETLADLESGRVDIIIGTHQLVNKAVKFKDLGLLI 684

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL         L +TATPIPRTL  + +   D+S IT  P  R PI+
Sbjct: 685 VDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLSTITTPPPNRYPIE 744

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + +I  +  + + + +   +  G + ++I  +IE  KE            L     + + 
Sbjct: 745 SNVIRFSE-ETIRDAVLYEIQRGGQVFFIHNRIENIKEVAG-----MIQRLVPD--AKVG 796

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E +M SF NG   +L++TT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 797 IGHGQMEGKKLEKLMLSFINGEFDVLVSTTIIESGLDVTNANTIFINNANNFGLSDLHQM 856

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   +++ +  R++ L+       GF IA +DL+ R  G++L
Sbjct: 857 RGRVGRSNKKAFCYFITPPYSAMTEEARKRMTALEQFSELGSGFNIAMKDLEIRGAGDLL 916

Query: 635 GIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQD 670
           G +QSG      F   Q  L +++ E+   + K +  ++
Sbjct: 917 GGEQSGFINEIGFDTYQKILAEAIEELKENEFKELYNEE 955


>gi|171058689|ref|YP_001791038.1| transcription-repair coupling factor [Leptothrix cholodnii SP-6]
 gi|170776134|gb|ACB34273.1| transcription-repair coupling factor [Leptothrix cholodnii SP-6]
          Length = 1155

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 151/501 (30%), Positives = 236/501 (47%), Gaps = 25/501 (4%)

Query: 196  KKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            +    S     +    P  K    +W    R+        A ++  L  R+  ++     
Sbjct: 526  QLQLISRYTGVSAEEAPLHKLGSGQWEKAKRKAAEQVRDAAAELLNLYARRASREGFAFR 585

Query: 255  INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             + +    +    +  F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A 
Sbjct: 586  FSPQD--YEAFAASFGFEETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAA 643

Query: 315  AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
              AV  G Q  ++AP  +LA+QHY+ +        + V  I+        +  L+ +A G
Sbjct: 644  FVAVTGGKQVALLAPTTLLAEQHYQTLADRFAQWPVKVAEISRFRSTKEVKATLDGLAAG 703

Query: 375  QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
               I++GTH L     ++  L L+I+DE+HRFGV+ + ++        VL +TATPIPRT
Sbjct: 704  TVDIVVGTHKLLSPDSKFKNLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTATPIPRT 763

Query: 435  LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            L +   G  D+S I   P  R  IKT +        + E +   L  G + Y++  +++ 
Sbjct: 764  LGMALEGLRDLSVIATAPQRRLAIKTFV-RNETGGTIREAVMRELKRGGQVYFLHNEVDT 822

Query: 495  KKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             +         R   L E    + IA+ HG+M + + E VM  F      +L+ +T+IE 
Sbjct: 823  IE--------NRRQKLEEMLPEARIAVAHGQMPERELERVMRDFVAQRHNVLLCSTIIET 874

Query: 554  GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR---L 608
            GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR    +   LL      L+K +  R   +
Sbjct: 875  GIDVPSANTIVISRADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDTEGLTKQAQQRLDAI 934

Query: 609  SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
              ++    GF +A  DL+ R  GE+LG  QSG    +    +L++ +L  A +  K    
Sbjct: 935  QAMEELGSGFYLAMHDLEIRGAGEVLGDNQSGNM--MEVGFQLYNEMLAEAVRAMKA--G 990

Query: 669  QDPDLTSVR---GQSIRILLY 686
            ++PDL S     G +  + L+
Sbjct: 991  EEPDLLSPTGFFGAATEVNLH 1011


>gi|309790907|ref|ZP_07685449.1| transcription-repair coupling factor [Oscillochloris trichoides DG6]
 gi|308227021|gb|EFO80707.1| transcription-repair coupling factor [Oscillochloris trichoides DG6]
          Length = 1171

 Score =  356 bits (913), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 145/457 (31%), Positives = 234/457 (51%), Gaps = 19/457 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+  A  + LA  +  L  ++Q K+      N + +  +++  + P+  T+ Q 
Sbjct: 561  DWERAKRKARAAVQDLAQDLLALYAQRQTKRG--HAFNPDNEWQRELEGSFPYIETEDQL 618

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              + ++  DM     M R++ GDVG GKT VAL A   AV+ G Q  ++ P  +LAQQH+
Sbjct: 619  RVLAEVKTDMEHDVPMDRLICGDVGFGKTEVALRAAFKAVQDGKQVALLVPTTVLAQQHF 678

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  K+      + VE+++       +   +  +  G+  IIIGTH L    + +  L LV
Sbjct: 679  ETFKQRMAAFPVKVEMLSRFRSAKEQDVIMRELLLGRVDIIIGTHRLLSKDVIFKDLGLV 738

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L Q      VL +TATPIPRTL +   G  D+S I   P  R P+
Sbjct: 739  IVDEEQRFGVRHKERLKQLRAEVDVLTLTATPIPRTLHMAMAGIRDLSVIDTPPEDRIPV 798

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            KT + P +    + E +   L    + Y++  +++        S+    N L      ++
Sbjct: 799  KTYVTPYDET-LIREAILRELERNGQVYFVHNRVQ--------SIYHVANHLRNLVPEAN 849

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I + HG++++ + E VM  F  G   +L+ TT+IE G+DV  A+ +II++A +FGLAQL+
Sbjct: 850  IGVGHGQLNERELEQVMIDFFEGRHDVLVCTTIIESGLDVSSANTMIIDDATNFGLAQLY 909

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR    +   L Y     +++ +  RL  ++   +   GF +A  DL+ R  G 
Sbjct: 910  QLRGRVGRSANRAYAYLFYKGDRAMTEEAQQRLEAIQEATELGAGFRVAMRDLEIRGAGN 969

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            +LG +QSG         +L+  LLE A +  K  +  
Sbjct: 970  LLGAEQSGHI--AAVGFDLYSRLLEQAVQQLKQRVDA 1004


>gi|55821999|ref|YP_140440.1| transcription repair coupling factor [Streptococcus thermophilus
           CNRZ1066]
 gi|55737984|gb|AAV61625.1| transcription repair coupling factor [Streptococcus thermophilus
           CNRZ1066]
          Length = 1168

 Score =  356 bits (913), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 150/452 (33%), Positives = 235/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +    +       ++ 
Sbjct: 557 KLNDGRFQKTKQKVSKQVEDIADNLLKLYA--ERSQLKGFAFSPDDDNQRDFEDEFSYAE 614

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV  G Q  I+ P  +L
Sbjct: 615 TVDQLRSIKEIKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVL 674

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A QHY   K+  +N  + V+ ++    +  + + ++ +A G+  IIIGTH L    +++ 
Sbjct: 675 AHQHYMNFKERFENHAVEVDELSRFRSKKEQNETIKNLAKGRIDIIIGTHRLLSKDVKFS 734

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 735 DLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSIIETAPT 794

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + ++I  ++E           ++ + LHE 
Sbjct: 795 NRYPVQTYVMETN-PGLIREAILREMDRGGQIFYIYNRVETID--------QKVSELHEL 845

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + I  +HG+MS++  E+ +  F NG   +L+ATT+IE GID+ + + ++IENA+H G
Sbjct: 846 VPEARIGFVHGQMSEVMLENTLLDFLNGDYDILVATTIIETGIDIPNVNTLLIENADHMG 905

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+YHP   L++ S  RL  +K       GF IA  DL  
Sbjct: 906 LSTLYQLRGRVGRSNRIAYAYLMYHPDKVLTEVSEKRLDAIKGFTELGSGFKIAMRDLSI 965

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 966 RGAGNILGASQSGFID--SVGFEMYSQLLEEA 995


>gi|168702194|ref|ZP_02734471.1| transcription-repair coupling factor [Gemmata obscuriglobus UQM 2246]
          Length = 1121

 Score =  356 bits (913), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 152/530 (28%), Positives = 257/530 (48%), Gaps = 38/530 (7%)

Query: 178  ALSRLPVLPEWIEK---DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
             L     +  ++     DL+QK      ++A   +  P  A    W+    +       +
Sbjct: 492  VLEFRDGIFLYVPATRIDLVQKY--VGGSQAEPQLSKPGGAA---WSRKKEKVSEAVRDM 546

Query: 235  AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
            A ++  +   +Q       P   +    ++     P+  T  Q SAI ++  D+ +   M
Sbjct: 547  AAEMINIQALRQAVPGHQFP--PDSDWQKEFEAAFPYQETPDQLSAIAEVKGDLEKTKPM 604

Query: 295  LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
             R++ GDVG GKT VA+ A   AV++G Q  ++ P  +LA+QH+    +       +V+ 
Sbjct: 605  DRLICGDVGYGKTEVAIRAAFKAVDSGKQVAVLVPTTVLAEQHFRTFTQRFAEYPFMVDA 664

Query: 355  ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
            +      A +++ L+++A G+  +I+GTH L    + +  L LV++DE+ RFGV+ + +L
Sbjct: 665  VNRFKSGAKQKETLKKLAAGEVDVIVGTHRLLSKDVTFKDLGLVVIDEEQRFGVEHKERL 724

Query: 415  TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                    VL MTATPIPRTL  + LG  +IS +   PA R+P++T I   +   ++   
Sbjct: 725  KHLRATVDVLTMTATPIPRTLHASLLGIREISNLETPPADRQPVETHITRWDD-KQLRNA 783

Query: 475  LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
            +   ++ G + Y++  ++++  E   +        L     + + + HG+M   D E  M
Sbjct: 784  ILREMNRGGQVYFVHNRVQDIYEVATK-----IEILVPE--AKVTVGHGQMDAHDLEKAM 836

Query: 535  DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
              F      +L+ATT+IE G+D+ +A+ I I+ A+ +GLA LHQLRGRVGR +  +    
Sbjct: 837  VRFVRKEADILVATTIIESGLDIPNANTIFIDEADTYGLADLHQLRGRVGRSKHRAYAYF 896

Query: 595  LYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
            + +P   L+  +  RL  ++   +   GF IA  DL+ R  G ILG +QSG    +    
Sbjct: 897  IVNPLKLLNPTAQRRLKAIEEFTELGAGFKIAMRDLEIRGAGNILGGEQSGHIAAI--GY 954

Query: 650  ELHDSLLEIARKDAKH-----ILTQDPDL--------TSVRGQSIRILLY 686
            EL+  LLE A +  KH      +    DL          V+GQ +RI +Y
Sbjct: 955  ELYCQLLENAVRALKHQPPKVAVDVVVDLPWPSYLPRDYVQGQKLRIEVY 1004


>gi|332285001|ref|YP_004416912.1| transcription-repair coupling factor [Pusillimonas sp. T7-7]
 gi|330428954|gb|AEC20288.1| transcription-repair coupling factor [Pusillimonas sp. T7-7]
          Length = 1158

 Score =  356 bits (913), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 144/473 (30%), Positives = 224/473 (47%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L   +  ++     +       Q       F  T  Q 
Sbjct: 564  QWDKARRKAAKQVRDAAAELLALYAHRAAREGFRFKLPPND--YQAFAEGFGFEETPDQA 621

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ +L DM+    M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH 
Sbjct: 622  AAIEAVLGDMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVVNGKQVALLCPTTLLAEQHA 681

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       +  + V  ++          A++ +  GQ  I+IGTH +    +++ +L LV
Sbjct: 682  QTFADRFADWPVKVVELSRFRSTKEVAAAIKGLNDGQVDIVIGTHKILSKDVKFKQLGLV 741

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I   P  R  I
Sbjct: 742  IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAI 801

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +   +    + E L   L  G + Y++  +++        +   R   L     + I
Sbjct: 802  KTFVRREDS-GTIREALLRELKRGGQVYFLHNEVDTIH-----NRRARLEELVPE--ARI 853

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+  GLAQLHQ
Sbjct: 854  AVAHGQMPERELEEVMKGFYQQRYNVLLCTTIIETGIDVPTANTIVIHRADRLGLAQLHQ 913

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTR---LSVLKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L+      ++ N+  R   +  ++    GF +A  DL+ R  GE+
Sbjct: 914  LRGRVGRSHHQAYAYLMTPGEDAMTSNAKKRLEAIQAMEELGAGFFLAMHDLEIRGTGEV 973

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG  QSG    +     ++  +L  A +  K    ++PDL S       + L+
Sbjct: 974  LGESQSGNIHEIGFS--MYSDMLNTAVRALKS--GEEPDLDSPFSSLCEVNLH 1022


>gi|147676452|ref|YP_001210667.1| hypothetical protein PTH_0117 [Pelotomaculum thermopropionicum SI]
 gi|146272549|dbj|BAF58298.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 592

 Score =  356 bits (913), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 136/433 (31%), Positives = 225/433 (51%), Gaps = 15/433 (3%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
             G     +    +++    P+  T  Q  A++++  DM +   M R+L GDVG GKT V
Sbjct: 1   MRGHAFGPDTVWQKELEEAFPYEETPDQLRAVEEVKADMERPRPMDRLLCGDVGYGKTEV 60

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           AL A   AV  G Q  I+ P  ILAQQHY   ++      + +E+++       +R+ L+
Sbjct: 61  ALRAAFKAVMDGKQVAILVPTTILAQQHYTTFRERLARFPVNIEVLSRFRTAREQRQVLQ 120

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +  G   I+IGTH L QD +++  L L++VDE+ RFGV  + +L        VL +TAT
Sbjct: 121 GLEQGTVDIVIGTHRLLQDDVRFKALGLLVVDEEQRFGVAHKERLKMIRKDVDVLTLTAT 180

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL ++ +G  D S +   P  R P++T ++  + +  + E ++  ++ G + +++ 
Sbjct: 181 PIPRTLHMSLIGVRDTSILETPPEDRYPVQTYVLEEDPV-LIREAIRREMNRGGQVFFVY 239

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +I      +   V      L     + IA+ HG+M + + E VM  F +    +L+ TT
Sbjct: 240 NRI-----MDLDQVALWLQELVPE--ARIAVAHGQMKEDELEQVMLDFIDRRYDVLVCTT 292

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
           +IE G+D+ + + +++++A   GLAQL+QLRGRVGR   ++     +     L + +  R
Sbjct: 293 IIENGLDISNVNTLLVKDANMMGLAQLYQLRGRVGRSNRLAHAYFTFRKDRVLGEAAEKR 352

Query: 608 LSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           L+ ++       GF IA  DL+ R  G ILG +Q G         +L+  LLE A ++A+
Sbjct: 353 LAAIREFTELGSGFKIAMRDLEIRGAGNILGAEQHGHI--AAVGFDLYCRLLEEAIREAR 410

Query: 665 HILTQDPDLTSVR 677
            I T  P  TS+ 
Sbjct: 411 GIDTVQPVETSIE 423


>gi|30260244|ref|NP_842621.1| transcription-repair coupling factor [Bacillus anthracis str. Ames]
 gi|47525306|ref|YP_016655.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames
            Ancestor']
 gi|49183087|ref|YP_026339.1| transcription-repair coupling factor [Bacillus anthracis str. Sterne]
 gi|65317513|ref|ZP_00390472.1| COG1197: Transcription-repair coupling factor (superfamily II
            helicase) [Bacillus anthracis str. A2012]
 gi|165872560|ref|ZP_02217192.1| transcription-repair coupling factor [Bacillus anthracis str. A0488]
 gi|167635067|ref|ZP_02393384.1| transcription-repair coupling factor [Bacillus anthracis str. A0442]
 gi|167641515|ref|ZP_02399763.1| transcription-repair coupling factor [Bacillus anthracis str. A0193]
 gi|170688877|ref|ZP_02880079.1| transcription-repair coupling factor [Bacillus anthracis str. A0465]
 gi|170707542|ref|ZP_02897995.1| transcription-repair coupling factor [Bacillus anthracis str. A0389]
 gi|177655328|ref|ZP_02936857.1| transcription-repair coupling factor [Bacillus anthracis str. A0174]
 gi|190568951|ref|ZP_03021852.1| transcription-repair coupling factor [Bacillus anthracis
            Tsiankovskii-I]
 gi|227812727|ref|YP_002812736.1| transcription-repair coupling factor [Bacillus anthracis str. CDC
            684]
 gi|229603766|ref|YP_002864705.1| transcription-repair coupling factor [Bacillus anthracis str. A0248]
 gi|254682320|ref|ZP_05146181.1| transcription-repair coupling factor [Bacillus anthracis str.
            CNEVA-9066]
 gi|254735455|ref|ZP_05193163.1| transcription-repair coupling factor [Bacillus anthracis str. Western
            North America USA6153]
 gi|254744643|ref|ZP_05202322.1| transcription-repair coupling factor [Bacillus anthracis str. Kruger
            B]
 gi|254756348|ref|ZP_05208377.1| transcription-repair coupling factor [Bacillus anthracis str. Vollum]
 gi|254762404|ref|ZP_05214246.1| transcription-repair coupling factor [Bacillus anthracis str.
            Australia 94]
 gi|30253565|gb|AAP24107.1| transcription-repair coupling factor [Bacillus anthracis str. Ames]
 gi|47500454|gb|AAT29130.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames
            Ancestor']
 gi|49177014|gb|AAT52390.1| transcription-repair coupling factor [Bacillus anthracis str. Sterne]
 gi|164711688|gb|EDR17233.1| transcription-repair coupling factor [Bacillus anthracis str. A0488]
 gi|167510500|gb|EDR85898.1| transcription-repair coupling factor [Bacillus anthracis str. A0193]
 gi|167529541|gb|EDR92291.1| transcription-repair coupling factor [Bacillus anthracis str. A0442]
 gi|170127538|gb|EDS96412.1| transcription-repair coupling factor [Bacillus anthracis str. A0389]
 gi|170667101|gb|EDT17862.1| transcription-repair coupling factor [Bacillus anthracis str. A0465]
 gi|172080169|gb|EDT65262.1| transcription-repair coupling factor [Bacillus anthracis str. A0174]
 gi|190559875|gb|EDV13859.1| transcription-repair coupling factor [Bacillus anthracis
            Tsiankovskii-I]
 gi|227004902|gb|ACP14645.1| transcription-repair coupling factor [Bacillus anthracis str. CDC
            684]
 gi|229268174|gb|ACQ49811.1| transcription-repair coupling factor [Bacillus anthracis str. A0248]
          Length = 1176

 Score =  356 bits (913), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 232/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|325286644|ref|YP_004262434.1| transcription-repair coupling factor [Cellulophaga lytica DSM 7489]
 gi|324322098|gb|ADY29563.1| transcription-repair coupling factor [Cellulophaga lytica DSM 7489]
          Length = 1113

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 139/451 (30%), Positives = 228/451 (50%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++     + +A  +  +   ++ K   G     +  +  ++  +  +  T  Q  
Sbjct: 503 WKKLKQKTKTRVKQIAFDLIKVYANRRLK--KGFKYAPDSYLQHELEASFIYEDTPDQSK 560

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D+ +DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  ILA QH++
Sbjct: 561 ATEDLKKDMESDRPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHHK 620

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + V+ +        +R+ LER+A G+  IIIGTH L   ++ +  L L+I
Sbjct: 621 TFAERLKDMPVTVDYVNRFRTAKEKRETLERLAEGKVDIIIGTHQLVNKNVVFKDLGLLI 680

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S I   P  R PI 
Sbjct: 681 VDEEQKFGVAVKDKLKSIKENVDVLTLTATPIPRTLQFSLMAARDLSTINTAPPNRYPID 740

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + ++     D + + +   +  G + ++I  +IE  KE            L     + I 
Sbjct: 741 SHVVRFTE-DTIRDAVSYEIQRGGQVFFIHNRIENIKEVAG-----MLQRLVPD--AKIG 792

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E++M +F NG   +L++TT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 793 IGHGQMDGKKLETLMLAFMNGEFDVLVSTTIIESGLDVPNANTIFINNANNFGLSDLHQM 852

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   +S ++  R+  L+       GF IA +DL+ R  G+IL
Sbjct: 853 RGRVGRSNKKAFCYFITPPYDSMSNDARKRIQALEQFTELGSGFNIAMKDLEIRGAGDIL 912

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG    +      +  +L    ++ K 
Sbjct: 913 GGEQSGFINEIGFD--AYQKILAETVEELKE 941


>gi|228912793|ref|ZP_04076441.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            pulsiensis BGSC 4CC1]
 gi|228846853|gb|EEM91857.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            pulsiensis BGSC 4CC1]
          Length = 1176

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 232/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|196036345|ref|ZP_03103742.1| transcription-repair coupling factor [Bacillus cereus W]
 gi|196041756|ref|ZP_03109046.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99]
 gi|196047377|ref|ZP_03114590.1| transcription-repair coupling factor [Bacillus cereus 03BB108]
 gi|218901255|ref|YP_002449089.1| transcription-repair coupling factor [Bacillus cereus AH820]
 gi|225862106|ref|YP_002747484.1| transcription-repair coupling factor [Bacillus cereus 03BB102]
 gi|228925307|ref|ZP_04088404.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
 gi|228931556|ref|ZP_04094463.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
 gi|228943860|ref|ZP_04106246.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            monterrey BGSC 4AJ1]
 gi|229089185|ref|ZP_04220467.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42]
 gi|229119716|ref|ZP_04248978.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201]
 gi|229182448|ref|ZP_04309700.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1]
 gi|301051789|ref|YP_003790000.1| transcription-repair coupling factor [Bacillus anthracis CI]
 gi|195990975|gb|EDX54946.1| transcription-repair coupling factor [Bacillus cereus W]
 gi|196021779|gb|EDX60473.1| transcription-repair coupling factor [Bacillus cereus 03BB108]
 gi|196027376|gb|EDX65993.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99]
 gi|218538935|gb|ACK91333.1| transcription-repair coupling factor [Bacillus cereus AH820]
 gi|225786910|gb|ACO27127.1| transcription-repair coupling factor [Bacillus cereus 03BB102]
 gi|228601028|gb|EEK58596.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1]
 gi|228663741|gb|EEL19319.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201]
 gi|228694148|gb|EEL47829.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42]
 gi|228815817|gb|EEM62052.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            monterrey BGSC 4AJ1]
 gi|228828108|gb|EEM73835.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
 gi|228834354|gb|EEM79894.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
 gi|300373958|gb|ADK02862.1| transcription-repair coupling factor [Bacillus cereus biovar
            anthracis str. CI]
          Length = 1176

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 232/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|52145163|ref|YP_081665.1| transcription-repair coupling factor [Bacillus cereus E33L]
 gi|51978632|gb|AAU20182.1| transcription-repair coupling factor [Bacillus cereus E33L]
          Length = 1176

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 232/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|49479988|ref|YP_034406.1| transcription-repair coupling factor [Bacillus thuringiensis serovar
            konkukian str. 97-27]
 gi|49331544|gb|AAT62190.1| transcription-repair coupling factor [Bacillus thuringiensis serovar
            konkukian str. 97-27]
          Length = 1178

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 232/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 574  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 631

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 632  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 691

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 692  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 751

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 752  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 811

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 812  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 863

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 864  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 923

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 924  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 983

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 984  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1009


>gi|324324043|gb|ADY19303.1| transcription-repair coupling factor [Bacillus thuringiensis serovar
            finitimus YBT-020]
          Length = 1176

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 232/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|299820651|ref|ZP_07052540.1| transcription-repair coupling factor [Listeria grayi DSM 20601]
 gi|299817672|gb|EFI84907.1| transcription-repair coupling factor [Listeria grayi DSM 20601]
          Length = 1186

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 141/449 (31%), Positives = 230/449 (51%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +  A  + +A  +  L   ++ +   G     + ++ ++     P+  T  Q 
Sbjct: 580  EWKRVKSKVKASVQDIADDLIKLYAEREAE--KGYAFTPDSEMQREFEDAFPYQETDDQI 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +IK+I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQHY
Sbjct: 638  RSIKEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +K+  Q   I V +++    +  + + LE +  G   I++GTH L    + Y  L  +
Sbjct: 698  ETMKERFQGFPIEVGLLSRFRTKKQQNETLEGLKKGTVDIVVGTHRLLSKDVVYSDLGFL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV  + K+        VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 758  VVDEEQRFGVTHKEKIKTIRAKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T +   N +  + E ++  L+   + Y++  ++E           +  ++L     + +
Sbjct: 818  QTYVAERNNV-MIREAIERELAREGQVYYLYNRVESIV-----QKADEISALVPD--ARV 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++ + ESV+ SF  G   +L+ TT+IE G+D+ + + + +++A+  GL+QL+Q
Sbjct: 870  AFAHGQMTETELESVIVSFLEGEYDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLYQ 929

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+    +Y     L + +  RL  +K       GF IA  DL  R  G I
Sbjct: 930  LRGRVGRSNRIAYAYFMYQKDKVLREEAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNI 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +Q G    +     L+  +L+ A + 
Sbjct: 990  LGAQQHGFIDSVGFD--LYSQMLKEAIEA 1016


>gi|229153832|ref|ZP_04281963.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342]
 gi|228629636|gb|EEK86332.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342]
          Length = 1176

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 138/448 (30%), Positives = 232/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPI 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|42779132|ref|NP_976379.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987]
 gi|206977924|ref|ZP_03238811.1| transcription-repair coupling factor [Bacillus cereus H3081.97]
 gi|217957629|ref|YP_002336171.1| transcription-repair coupling factor [Bacillus cereus AH187]
 gi|222093823|ref|YP_002527872.1| transcription-repair coupling factor [Bacillus cereus Q1]
 gi|229136900|ref|ZP_04265528.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26]
 gi|42735047|gb|AAS38987.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987]
 gi|206743830|gb|EDZ55250.1| transcription-repair coupling factor [Bacillus cereus H3081.97]
 gi|217067660|gb|ACJ81910.1| transcription-repair coupling factor [Bacillus cereus AH187]
 gi|221237870|gb|ACM10580.1| transcription-repair coupling factor [Bacillus cereus Q1]
 gi|228646565|gb|EEL02771.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26]
          Length = 1176

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 232/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|297171405|gb|ADI22408.1| transcription-repair coupling factor (superfamily II helicase)
           [uncultured Planctomycetales bacterium HF0500_02G17]
          Length = 1114

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 143/458 (31%), Positives = 227/458 (49%), Gaps = 15/458 (3%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P  +        A++    + +      +L +R   +   G+    +    ++     P+
Sbjct: 503 PPLSTLGGKKWKAQKERVSEGVRDLAAEMLRVRAARESMPGVRYPADTPWQKEFEAEFPY 562

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q +A+ +I +DMS    M R++ GDVG GKT VA+ A   A E G Q  ++ P  
Sbjct: 563 DETEDQLAALAEIKKDMSSDRPMDRLICGDVGFGKTEVAIRAAFKACEFGRQVAVLVPTT 622

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LA+QH    +    +    V  ++    Q      L  +  G+  ++IGTH L    ++
Sbjct: 623 VLAEQHERTFRSRFADYPFRVASLSRFKSQKELNATLAALRRGEIDVVIGTHRLLSKDVK 682

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L LV+VDE+ RFGV+ + +L +      VL ++ATPIPRTL ++ LG  DIS +T  
Sbjct: 683 FADLGLVVVDEEQRFGVEHKERLLRLRLTVDVLTLSATPIPRTLHMSMLGLRDISSLTTP 742

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R+ I T +IP N    + + +   LS   + Y++  ++      N +S+ +    L 
Sbjct: 743 PLERRAIVTEVIPYNGR-RIAQAIARELSRNGQVYFVHNRV-----HNIKSIADNVRQLA 796

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               + I I HG+M   + E VM  F      +L++TT+IE GID+  A+ +II +A+ F
Sbjct: 797 PD--AKIVIGHGQMPPNELEEVMLKFMRREADVLVSTTIIESGIDISSANTMIINDADRF 854

Query: 572 GLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKN---TEDGFLIAEEDLK 626
           GLA LHQLRGRVGR    + C LL     P+ + +  RL  ++       GF IA  DL+
Sbjct: 855 GLADLHQLRGRVGRSSHRAYCYLLLPVDRPVREVAQKRLKAIEQYSMLGAGFKIAMRDLE 914

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            R  G ILG +QSG    +     ++  LLE A  + K
Sbjct: 915 IRGAGNILGAEQSGHIAAVGYD--MYCQLLENAVHELK 950


>gi|269837730|ref|YP_003319958.1| transcription-repair coupling factor [Sphaerobacter thermophilus DSM
            20745]
 gi|269786993|gb|ACZ39136.1| transcription-repair coupling factor [Sphaerobacter thermophilus DSM
            20745]
          Length = 1173

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 142/452 (31%), Positives = 228/452 (50%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    +        +A ++  L   ++  + +      +    +++  + P+  T  Q 
Sbjct: 577  EWARVKQRVRRAVREMAFELLQLYAAREATEGV--AFGPDTDWDRELEESFPYVETPGQL 634

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+++  DM +   M R++ GDVG GKT VAL A   AV  G Q  I+ P  ILA QHY
Sbjct: 635  QAIREVKADMEKPRPMDRLVCGDVGYGKTEVALRAAFKAVNNGYQVAILVPTTILALQHY 694

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +       + +E+++    +  + + L+++  G+  +IIGTH L Q  +++ KL LV
Sbjct: 695  HTFRSRLAPFPVRIEMLSRLRSRKEQTQILQQLERGEIDVIIGTHRLLQRDVRFKKLGLV 754

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  +    +  T   VL MTATPIPRTL +   G  D+S IT  P  R PI
Sbjct: 755  IIDEEQRFGVAHKEHFKRLRTNVDVLTMTATPIPRTLYMALSGIRDLSVITTPPQERTPI 814

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T +   N    + E +   +S G + Y++  +++         V+ER   L     +  
Sbjct: 815  RTFVTASND-SLIREAILREISRGGQVYFVHNRVQSIY-----HVLERLEKLVPE--ARF 866

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M + + E +M +F      +L+ TT+IE G+D+ + + III+ A   GL QL+Q
Sbjct: 867  GVGHGQMDEDELEQLMLAFMQHEFDVLVCTTIIESGVDIPNVNTIIIDRAHQLGLTQLYQ 926

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   +LY    PLS  +  RL  ++   +   GF IA  DL+ R  G +
Sbjct: 927  LRGRVGRSHHRAYAYVLYDANVPLSAEAVARLEAIQEATELGAGFQIALRDLEIRGAGNV 986

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG         +L+  +L  A ++ K 
Sbjct: 987  LGPEQSGH--VAAVGLDLYTRMLATAVEEIKQ 1016


>gi|254281663|ref|ZP_04956631.1| transcription-repair coupling factor [gamma proteobacterium NOR51-B]
 gi|219677866|gb|EED34215.1| transcription-repair coupling factor [gamma proteobacterium NOR51-B]
          Length = 1155

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 146/476 (30%), Positives = 232/476 (48%), Gaps = 19/476 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
              +W    R+       +A Q+  +  R++ ++        +     +     PF  T  
Sbjct: 550  SEQWEKARRKASKRASDVAAQLLEVYARREARQGFAHAWEPDAW--DRFCNQFPFEETPD 607

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            Q +AI+ +  DM     M R++ GDVG GKT VA+ A   A   G Q  ++ P  +LAQQ
Sbjct: 608  QAAAIEAVRNDMCAPGVMDRLVCGDVGFGKTEVAMRAAFLAARNGKQVAVLVPTTLLAQQ 667

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            H+   +       + VE+I+            +R+  G   I++GTH L Q   ++  L 
Sbjct: 668  HFNSFRDRFAGWSVTVEVISRFKTAKDIAAVAKRVESGDVDILVGTHKLLQTDFRFNDLG 727

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+I+DE+HRFGV+Q+  +        +L MTATPIPRTL +   G  D+S I   PA R 
Sbjct: 728  LLIIDEEHRFGVKQKESIKALRAEIDILTMTATPIPRTLNMALGGLRDLSIIATPPARRL 787

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             IKT I   N    V E +      G + Y++  +++           ++  +L      
Sbjct: 788  SIKTFIREHN-TALVKEAVLRETLRGGQVYYLHNEVKTI-----AQTAQKLQTLLPDL-- 839

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            S+ I HG+M +++ E VM  F +    +L+ +T+IE GID+ +A+ IIIE A+ FGLAQL
Sbjct: 840  SVGIAHGQMREVELERVMSDFYHQRHHVLVCSTIIETGIDIPNANTIIIERADKFGLAQL 899

Query: 577  HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEG 631
            HQLRGRVGR    +   LL  P   L++++  RL  ++       G+++A  DL+ R  G
Sbjct: 900  HQLRGRVGRSHHQAYAYLLSPPRSSLTRDAEKRLEAIEAAGALGAGYMLATHDLEIRGAG 959

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            E+LG +QSG    +     L   +L  A    K    + PD+ +   +   + L++
Sbjct: 960  ELLGDEQSGQIHSVGFSLYLD--MLHNAVAALKR--GEIPDVDAPLDKGTEVKLHV 1011


>gi|221142305|ref|ZP_03566798.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus str. JKD6009]
 gi|304380521|ref|ZP_07363197.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus ATCC BAA-39]
 gi|269940074|emb|CBI48450.1| putative transcription-repair coupling factor [Staphylococcus aureus
            subsp. aureus TW20]
 gi|302750394|gb|ADL64571.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus str. JKD6008]
 gi|304340925|gb|EFM06849.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus ATCC BAA-39]
 gi|329313222|gb|AEB87635.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
            aureus T0131]
          Length = 1168

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 149/453 (32%), Positives = 231/453 (50%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K+ +   G     +         + P+  T  Q 
Sbjct: 567  EWKKTKAKVQQSVEDIAEELIDLY--KEREMAEGYQYGEDTAEQTTFELDFPYELTPDQA 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 625  KSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  + +++++        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 685  ETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 745  IVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N +  + E L+  LS   +  ++  +++   E       E+   L     ++I
Sbjct: 805  QTYVLEQN-MSFIKEALERELSRDGQVLYLYNKVQSIYE-----KREQLQMLMPD--ANI 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++ D E  M SF N    +L+ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 857  AVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L+     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 917  LRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G    +     L+  +LE A  + + I
Sbjct: 977  LGKQQHGFIDTVGFD--LYSQMLEEAVNEKRGI 1007


>gi|126657369|ref|ZP_01728528.1| transcription-repair coupling factor [Cyanothece sp. CCY0110]
 gi|126621356|gb|EAZ92068.1| transcription-repair coupling factor [Cyanothece sp. CCY0110]
          Length = 1160

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 150/452 (33%), Positives = 241/452 (53%), Gaps = 20/452 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    +      + LA  +  L  ++        P+  +    Q++  + P+ PT  Q  
Sbjct: 561 WQKSKQRVRKNIKKLAVDLINLYAKRAKNVGFTYPL--DTPWQQELEDSFPYQPTPDQLK 618

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIGILAQQHY 338
           AI+D+  D+     M R++ GDVG GKT VA+ A+  AV +G  Q   +AP  IL QQHY
Sbjct: 619 AIQDVKIDLESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGHKQVAFLAPTTILTQQHY 678

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             +K+      I + ++      + +++ ++R+A G+  I++GT  L   SI++  L L+
Sbjct: 679 HTLKERFAPYPINIGLLNRFRTNSEKKEIIDRLATGELDIVVGTQQLLGKSIKFKDLGLL 738

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ RFGV Q+ K+    +   VL +TATPIPRTL ++  G  ++S IT  P  R+PI
Sbjct: 739 VVDEEQRFGVNQKEKIKDMKSHVDVLTLTATPIPRTLYMSLSGIREMSLITTPPPSRRPI 798

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           KT +   N  D V   ++  L  G + +++ P++E  +        E    L +    + 
Sbjct: 799 KTHLSRYN-PDVVRTAIRNELDRGGQVFYVVPRVEGIE--------EVAAELKKMVPSAR 849

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAI HG+M+  D E  M SF NG   +L+ TT++E G+D+   + IIIE+A+ FGLAQL+
Sbjct: 850 IAIGHGQMNVNDLEMTMLSFNNGDADILVCTTIVESGLDIPRVNTIIIEDAQKFGLAQLY 909

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGRVGR    +   LLY     L++ +  RL  L+       G+ +A  D++ R  G 
Sbjct: 910 QLRGRVGRAGIQAHAWLLYPSKAQLTETARKRLRALQEFSQLGSGYQLATRDMEIRGVGN 969

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           +LG +QSG  + +    EL+  +L+ A K+ +
Sbjct: 970 LLGAEQSGQMESI--GFELYMDMLQEAIKEIQ 999


>gi|218895189|ref|YP_002443600.1| transcription-repair coupling factor [Bacillus cereus G9842]
 gi|218545395|gb|ACK97789.1| transcription-repair coupling factor [Bacillus cereus G9842]
          Length = 1176

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 231/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|47569902|ref|ZP_00240569.1| transcription-repair coupling factor [Bacillus cereus G9241]
 gi|228983309|ref|ZP_04143523.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            tochigiensis BGSC 4Y1]
 gi|229194444|ref|ZP_04321248.1| Transcription-repair-coupling factor [Bacillus cereus m1293]
 gi|47553436|gb|EAL11820.1| transcription-repair coupling factor [Bacillus cereus G9241]
 gi|228589034|gb|EEK47048.1| Transcription-repair-coupling factor [Bacillus cereus m1293]
 gi|228776423|gb|EEM24775.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            tochigiensis BGSC 4Y1]
          Length = 1176

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 232/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|163786687|ref|ZP_02181135.1| transcription-repair coupling factor [Flavobacteriales bacterium
           ALC-1]
 gi|159878547|gb|EDP72603.1| transcription-repair coupling factor [Flavobacteriales bacterium
           ALC-1]
          Length = 1096

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 139/459 (30%), Positives = 236/459 (51%), Gaps = 18/459 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++  +  + +A  +  L  +++ KK        +  +  ++  +  +  T  Q +
Sbjct: 490 WKTLKQKTKSRVKEIAFNLIKLYAKRKLKKGFQYA--PDSYMQHELEASFVYEDTPDQIT 547

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           +  DI  DM  +  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  ILA QH  
Sbjct: 548 STADIKADMESERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAYQHSR 607

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  ++  + V+ +        +R+ LE +  G+  IIIGTH L   ++++  L L+I
Sbjct: 608 TFKERLKDFPVTVDYVNRFRTAKEKRETLEGLEKGRVDIIIGTHQLANKNVKFKDLGLLI 667

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S IT  P  R PI+
Sbjct: 668 VDEEQKFGVAVKEKLKTIKENVDVLTLTATPIPRTLQFSLMAARDLSVITTAPPNRYPIE 727

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + +I     + + + +   +  G + ++I  +IE  KE            L     + I 
Sbjct: 728 SHVIRFAE-ETIRDAVSYEIQRGGQVFFIHNRIENIKEVAG-----MIQRLVPD--AKIG 779

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG++     E +M SF NG   +L++TT++E G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 780 IGHGQLDGKKLEHLMLSFMNGEFDVLVSTTIVESGLDVPNANTIFINNANNFGLSDLHQM 839

Query: 580 RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +   +  ++ ++  R++ L+       GF IA +DL+ R  G++L
Sbjct: 840 RGRVGRSNKKAFCYFITPEYSAMTTDARKRITALEQFTELGSGFNIAMKDLEIRGAGDLL 899

Query: 635 GIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQD 670
           G +QSG      F   Q  L++++ E+   +   +   D
Sbjct: 900 GGEQSGFINDIGFDTYQKILNEAIEELKESEFADLYKDD 938


>gi|228898807|ref|ZP_04063090.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
            4222]
 gi|228860832|gb|EEN05209.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
            4222]
          Length = 1176

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 231/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|319762021|ref|YP_004125958.1| transcription-repair coupling factor [Alicycliphilus denitrificans
            BC]
 gi|317116582|gb|ADU99070.1| transcription-repair coupling factor [Alicycliphilus denitrificans
            BC]
          Length = 1163

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 155/523 (29%), Positives = 242/523 (46%), Gaps = 31/523 (5%)

Query: 180  SRLPVLPEWIEKDLLQK---------KSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLA 229
               P L E++  +   K                   +    P  K    +W    R+   
Sbjct: 510  DGTPALQEFLHLEYADKAVLYVPVSQLQLIGRYTGVSADEAPLHKLGSGQWEKAKRKAAE 569

Query: 230  YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
                 A ++  +  R+  ++          +  ++ + +  F  T  Q++AI  ++QDM 
Sbjct: 570  QVRDAAAELLNIYARRAARQG--HAFRYSPQDYEQFVADFGFEETADQKAAIHAVVQDMI 627

Query: 290  QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
                M R++ GDVG GKT VAL A   AV  G Q   +AP  +LA+QHY  +        
Sbjct: 628  SPRPMDRLVCGDVGFGKTEVALRACFVAVTGGKQVAFLAPTTLLAEQHYRTLCDRFAKWP 687

Query: 350  IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
            + V  ++          A++ IA G   I++GTH L  +S ++  L L+I+DE+HRFGV+
Sbjct: 688  VKVAEVSRFRSGKEITAAVKGIADGTVDIVVGTHKLLSESTKFKNLGLLIIDEEHRFGVR 747

Query: 410  QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             +  + Q      VL +TATPIPRT+ +   G  D+S I   P  R  IKT +       
Sbjct: 748  HKEAMKQLRAEVDVLTLTATPIPRTMGMALEGLRDLSVIATAPQRRLAIKTFVRSEG-TG 806

Query: 470  EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDI 528
             + E +   L  G + Y++  ++E  +         R   L E    + IA+ HG+M + 
Sbjct: 807  VIREAVLRELKRGGQCYFLHNEVETIE--------NRRQKLEEILPEARIAVAHGQMPER 858

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            + E VM  F      +L+ +T+IE GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR   
Sbjct: 859  ELEKVMRDFVAQRYNILLCSTIIETGIDVPSANTILISRADKFGLAQLHQLRGRVGRSHH 918

Query: 589  ISSCILLYH--PPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
             +   L+      L+K +  RL     ++    GF +A  DL+ R  GE+LG  QSG   
Sbjct: 919  QAYAYLMVPDLDGLTKQAQQRLDAIQQMEELGSGFYLAMHDLEIRGAGEVLGENQSGNM- 977

Query: 644  FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             L    +L++ +L  A +  K    ++PDL +    +  I L+
Sbjct: 978  -LEVGFQLYNEMLAEAVRCLKA--GKEPDLLAPMQAATDINLH 1017


>gi|251794075|ref|YP_003008806.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2]
 gi|247541701|gb|ACS98719.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2]
          Length = 1175

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 233/453 (51%), Gaps = 19/453 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +  A  + +A  +  L   +Q     G     +     +     P+  T+ Q 
Sbjct: 560  EWIRAKNKVRASVQDIADDLIKLYAERQSA--PGFAFGQDTAYQNEFEAIFPYDETRDQL 617

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI++I +DM +   M R+L GDVG GKT VA+ A   A   G Q  I+ P  ILAQQHY
Sbjct: 618  RAIEEIKKDMQKPQPMDRLLCGDVGYGKTEVAVRAAFKAAIEGKQVAILVPTTILAQQHY 677

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  ++        +++++    +  +   ++ +  G   ++IGTH L    + +  L L+
Sbjct: 678  ETFRERFSGYPFNIQVLSRFRSRKEQNDTMKGLKAGTVDVVIGTHRLLSQDVIFKDLGLL 737

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 738  IVDEEQRFGVSHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 797

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  +    V E ++  L+ G + Y++  +++         + E+ N+L     + +
Sbjct: 798  QTYVVEYS-TSLVREAIERELARGGQVYYLYNRVQ-----GIYQMAEQINALVPD--AKV 849

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 850  AVGHGQMSEQELEKTILDFLDGESDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQ 909

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 910  LRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLSIRGAGNL 969

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAK 664
            LG +Q G         +L+  +L  EIA++ A+
Sbjct: 970  LGAEQHGFI--ASVGFDLYSQMLADEIAKRKAE 1000


>gi|296113202|ref|YP_003627140.1| transcription-repair coupling factor [Moraxella catarrhalis RH4]
 gi|295920896|gb|ADG61247.1| transcription-repair coupling factor [Moraxella catarrhalis RH4]
          Length = 1184

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 151/462 (32%), Positives = 237/462 (51%), Gaps = 19/462 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     + L     +A ++  +  R+  K   GI  +++    +       F  T  Q  
Sbjct: 586  WEKAKLKALEQIHDVAAELLNVQARRNAK--SGISFDIDMSQYELFASQFAFEETIDQAE 643

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV+AG Q  ++ P  +LA QH +
Sbjct: 644  AIHAVMHDMKQSKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHED 703

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                   +  I +E ++    + H+   L  +A G   I+IGTH L QD +++ +L L+I
Sbjct: 704  SFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMI 763

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+ + ++    T    L MTATPIPRTL +   G  DIS I   PA R  IK
Sbjct: 764  IDEEHRFGVRHKERIKALQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIK 823

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++P +  + + E +   +  G + Y++   +   +        +    L     + +A
Sbjct: 824  TFLLPKSD-ETIKEAILREILRGGQVYYLHNDVASIEA-----AADTLRELVGE--ARVA 875

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M++ +   VM+ F +    +L+A+T+IE GIDV +A+ III  A+ FG+AQLHQL
Sbjct: 876  VAHGQMNERELSVVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQL 935

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR    + C L+      LS ++  RL+ +        GF++A EDL+ R  GEIL
Sbjct: 936  RGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEIL 995

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            G +QSG  + +     +   +LE A    K    + P L + 
Sbjct: 996  GKEQSGNMQTIGFGLYMD--MLERATNAIKQ--GKTPSLATP 1033


>gi|319940213|ref|ZP_08014566.1| transcription-repair coupling factor [Streptococcus anginosus
           1_2_62CV]
 gi|319810684|gb|EFW07014.1| transcription-repair coupling factor [Streptococcus anginosus
           1_2_62CV]
          Length = 1164

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 151/452 (33%), Positives = 239/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    +      E +A  +  L    +  +  G   + +    Q+   + P+  
Sbjct: 555 KLNDGRFQKTKQRVQHQVEDIAEDLIKLYA--ERSQLKGFAFSSDDSYQQEFDNDFPYVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK++ +DM   + M R+L GDVG GKT VA+ A   AV    Q  I+ P  +L
Sbjct: 613 TEDQLRSIKEVKKDMESDHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAILVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  I +E+++    ++ ++  LE++  GQ  IIIGTH L    I + 
Sbjct: 673 AQQHYTNFKERFNDFPINIEVLSRFKSKSEQKTILEKLKKGQVDIIIGTHRLLSKDIVFA 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   ++ G + Y++  +++  +        ++ + L E 
Sbjct: 793 NRYPVQTYVLENNAT-VIRDAVLREMNRGGQVYYLYNKVDTME--------QKVSELKEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   LL+ TT+IE G+D+ + + + IENA++ G
Sbjct: 844 IPEASIGYVHGQMSEILLENTLLDFINGEYDLLVTTTIIETGVDIPNVNTLFIENADYMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKALTEISEKRLETIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGSSQSGFID--SVGFEMYSQLLEEA 993


>gi|289422646|ref|ZP_06424487.1| transcription-repair coupling factor [Peptostreptococcus anaerobius
            653-L]
 gi|289156946|gb|EFD05570.1| transcription-repair coupling factor [Peptostreptococcus anaerobius
            653-L]
          Length = 1133

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 136/466 (29%), Positives = 235/466 (50%), Gaps = 22/466 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW+   R+     E +   +  L  +++ +   G   + +     +     P+  T  Q 
Sbjct: 565  EWSKAKRKVKKEIEDMTQDLLELYSKRESR--KGYKYSKDTIWQTEFEEKFPYQETDDQL 622

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AIK+  +DM  +  M R++ GDVG GKT VA+ A+  AV    Q  ++ P  ILAQQH+
Sbjct: 623  KAIKETKKDMESQKAMDRLICGDVGYGKTEVAIRAIFKAVMDNKQVAVLVPTTILAQQHF 682

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  ++  I VE+++       +R+ +     G   ++IGTH +    I   +L L+
Sbjct: 683  NTFTERFEDYPIRVEVLSRFKTPKQQREIIADAKKGLVDVLIGTHRIVSKDIAMPRLGLI 742

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  L +      VL ++ATPIPRTL ++  G  D+S I E P  R P+
Sbjct: 743  VVDEEQRFGVKHKEALKKLRVDVDVLTLSATPIPRTLHMSLSGIRDMSIIEEPPQERYPV 802

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +    +   + + +   L+ G + +++  ++E  +    +        L     ++I
Sbjct: 803  MTYVTEA-KESIIQDEIYRELARGGQVFFVYNRVEGIETIASK-----IKKLVPE--ANI 854

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HGRM+    E+ + SF +    +L+ TT+IE G+D+ +A+ +II +A+  GL+QL+Q
Sbjct: 855  GVAHGRMTSSQLENTVLSFLSKEFDVLVCTTIIETGMDIANANTMIIYDADKMGLSQLYQ 914

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR  +     L+Y  +  +S+ S  RL  +K       GF +A  DL+ R  G++
Sbjct: 915  LRGRVGRSNKQGYAYLMYERNKVISEVSEKRLKAIKEFTEFGSGFKVAMRDLEIRGAGDV 974

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK-----HILTQDPDLT 674
            +G +Q G  +  +   EL+  +L  A +  K      +L  + DLT
Sbjct: 975  MGSQQHGHME--VIGYELYVKMLNEAIRKIKGDPVEEVLDVEIDLT 1018


>gi|306992457|gb|ADN19345.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 443

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 167/447 (37%), Positives = 264/447 (59%), Gaps = 8/447 (1%)

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVL 185
           GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL   +  +
Sbjct: 2   GKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEV 61

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+AL LM++
Sbjct: 62  EEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMALFLMKR 118

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++QGDVGSG
Sbjct: 119 SVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGDVGSG 176

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  ++++
Sbjct: 177 KTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKK 236

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K   P VL+
Sbjct: 237 EVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENPDVLV 296

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +G++ 
Sbjct: 297 MTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQV 356

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F NG   
Sbjct: 357 YVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVNGKID 416

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEH 570
           +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 417 ILVSTTVIEVGVNVPNATVMIVENAER 443


>gi|22298495|ref|NP_681742.1| transcription-repair coupling factor [Thermosynechococcus elongatus
           BP-1]
 gi|22294675|dbj|BAC08504.1| transcription-repair coupling factor [Thermosynechococcus elongatus
           BP-1]
          Length = 1142

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 142/449 (31%), Positives = 235/449 (52%), Gaps = 18/449 (4%)

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
            + AR R A  ++    + L   R Q +         +    +++  + P+ PT  Q  A
Sbjct: 548 RTKARVRKAIKKVAVDLLQLYAQRAQQRG---FAFPPDTPWQREMEDSFPYQPTPDQLKA 604

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I+++  DM     M R++ GDVG GKT VA+ A+  AV AG Q  ++AP  IL QQHY  
Sbjct: 605 IQEVKADMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVMAGKQVAVLAPTTILTQQHYHT 664

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           +K+      I V ++     +  R+  L+++  G+  +++GTH L  +S+++  L L++V
Sbjct: 665 LKERFAPYPIQVGLLNRFRSERERQDLLQKLKIGEIDVVVGTHQLLSNSVKFRDLGLLVV 724

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+ RFGV Q+ K+    T   VL ++ATPIPRTL +   G  ++S IT  P  R+PI+T
Sbjct: 725 DEEQRFGVNQKEKIKALKTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIQT 784

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            + P +  + V   ++  L  G + +++ P++E  +    +              + I I
Sbjct: 785 HLAPYD-PETVRSAIRQELDRGGQVFYVVPRVEGIEAVAAKLQG-------MVVGARILI 836

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG+M++ + ES M  F NG   +L+ TT+IE G+D+   + I++E+A+ FGLAQL+QLR
Sbjct: 837 AHGQMAEGELESTMLGFSNGEADILVCTTIIESGLDIPRVNTILVEDAQRFGLAQLYQLR 896

Query: 581 GRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
           GRVGR    +   L Y     L+  +  RL  ++       G+ +A  D++ R  G +LG
Sbjct: 897 GRVGRAGIQAHAWLFYPRQEVLTDAARQRLRAIQEFTQLGSGYQLAIRDMEIRGVGNLLG 956

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            +Q G    +     L+  LLE A  + +
Sbjct: 957 AQQHGQLDSVGFD--LYVELLEEAIAEIR 983


>gi|228970242|ref|ZP_04130902.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228789477|gb|EEM37396.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|326937845|gb|AEA13741.1| transcription-repair coupling factor [Bacillus thuringiensis serovar
            chinensis CT-43]
          Length = 1176

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 231/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|260219542|emb|CBA26387.1| Transcription-repair-coupling factor [Curvibacter putative symbiont
            of Hydra magnipapillata]
          Length = 1159

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 155/519 (29%), Positives = 245/519 (47%), Gaps = 29/519 (5%)

Query: 183  PVLPEWIEKDLLQK---------KSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDE 232
            P L E++  +   K             S     +    P  +    +W    R+      
Sbjct: 511  PELQEFLHLEYADKATLYVPVSQLQLISRYTGVSADEAPLHRLGSGQWEKAKRKAAEQVR 570

Query: 233  LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
              A ++  +  R+  ++    P        +    +  F  T  Q++AI  ++QDM    
Sbjct: 571  DSAAELLNIYARRAAREG--HPFRYSPGDYETFANDFGFEETADQKAAIHCVIQDMISPR 628

Query: 293  RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
             M R++ GDVG GKT VAL A   AV  G Q   +AP  +LA+QH++ +        + +
Sbjct: 629  PMDRLVCGDVGFGKTEVALRAAFIAVTGGKQVAFLAPTTLLAEQHFQTLVDRFSKWPVKI 688

Query: 353  EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
              ++          AL+ +A G   I++GTH L  +S Q+  L L+I+DE+HRFGV+ + 
Sbjct: 689  AEMSRFRSAKEITAALKGVADGTVDIVVGTHKLLSESTQFKNLGLLIIDEEHRFGVRHKE 748

Query: 413  KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            ++        VL +TATPIPRTL +   G  D+S I   P  R  IKT +        + 
Sbjct: 749  QMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRTEGN-GVIR 807

Query: 473  ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
            E +   L  G + Y++  ++E  +     +  ++   L     + IA+ HG+M +   E+
Sbjct: 808  EAVLRELKRGGQVYFLHNEVETIE-----NRRQKLEELLPE--ARIAVAHGQMPERQLEA 860

Query: 533  VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            VM  F      LL+ +T+IE GIDV  A+ I++  A+ FGLAQLHQLRGRVGR    +  
Sbjct: 861  VMRDFVAQRYNLLLCSTIIETGIDVPSANTIVMSRADKFGLAQLHQLRGRVGRSHHQAYA 920

Query: 593  ILLYHP--PLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             L+      L+K++  RL     ++    GF +A  DL+ R  GE+LG  QSG    L  
Sbjct: 921  YLMVPDIEGLTKHAQQRLDAIQQMEELGSGFYLAMHDLEIRGAGEVLGENQSGNM--LEV 978

Query: 648  QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
              +L++ +L  A +  K+   Q+PDL S    +  I L+
Sbjct: 979  GFQLYNEMLSEAVRCLKN--GQEPDLLSPLNVTTEINLH 1015


>gi|222056789|ref|YP_002539151.1| transcription-repair coupling factor [Geobacter sp. FRC-32]
 gi|221566078|gb|ACM22050.1| transcription-repair coupling factor [Geobacter sp. FRC-32]
          Length = 1169

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 147/483 (30%), Positives = 252/483 (52%), Gaps = 21/483 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     +  A  + +AG++  +   +Q ++      +   ++ Q+      +  T  Q++
Sbjct: 581  WEKTKAKARAAIQEMAGELLKIYAARQVEEG--HAFSPPDELYQEFEAAFAYEETPDQQA 638

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+D+L DM  K  M R++ GDVG GKT VAL     AV  G Q  ++ P  +LAQQH E
Sbjct: 639  AIEDVLLDMESKKPMDRLICGDVGYGKTEVALRGAFKAVMDGKQVAVLVPTTVLAQQHLE 698

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  ++  + VE+++       +++ +E + +G   ++IGTH L Q  I +  L L+I
Sbjct: 699  TFSARLKSYPVKVEMLSRFRTPKEQKEIIEGVKNGTVDVVIGTHRLLQKDIVFKDLGLLI 758

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV  + +L +      ++ +TATPIPRTL ++ +G  D+S I   P  R  IK
Sbjct: 759  IDEEQRFGVTHKERLKKYRAVVDIMTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLAIK 818

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +  D + E +   L  G + +++  +++         + E    +     + IA
Sbjct: 819  TFVARTSD-DLIREAVLRELRRGGQIFFVHNRVQTIGA-----MAEHLQRIVPE--AKIA 870

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM SF +G   LL+ TT+IE G+D+  A+ +I+  A+ FGL+QL+QL
Sbjct: 871  VGHGQMEEKELERVMLSFMHGESNLLLCTTIIESGLDIPTANTLIVNRADTFGLSQLYQL 930

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR ++ +   LL      +S ++  RL +++   +   GF IA  DL+ R  G++L
Sbjct: 931  RGRVGRSKQRAYAYLLIPGEGAISADARERLKIIQELTELGAGFRIATHDLEIRGAGDLL 990

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIA-RKDAKHILTQ--DPDLTSVRGQSIRILLYLYQYN 691
            G +QSG         EL+  LLE A R+     L +  +P++  +R  +     Y+ + N
Sbjct: 991  GARQSG--DIAAVGFELYTELLEEAIRQLKGEELAERVEPEI-KLRIPAFIPEDYVREPN 1047

Query: 692  EAF 694
            +  
Sbjct: 1048 QRL 1050


>gi|229159227|ref|ZP_04287252.1| Transcription-repair-coupling factor [Bacillus cereus R309803]
 gi|228624242|gb|EEK81043.1| Transcription-repair-coupling factor [Bacillus cereus R309803]
          Length = 1176

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 232/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|326571030|gb|EGE21054.1| transcription-repair coupling factor [Moraxella catarrhalis BC7]
          Length = 1184

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 151/462 (32%), Positives = 237/462 (51%), Gaps = 19/462 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     + L     +A ++  +  R+  K   GI  +++    +       F  T  Q  
Sbjct: 586  WEKAKLKALEQIHDVAAELLNVQARRNAK--SGISFDIDMSQYELFASQFAFEETIDQAE 643

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV+AG Q  ++ P  +LA QH +
Sbjct: 644  AIHAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHED 703

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                   +  I +E ++    + H+   L  +A G   I+IGTH L QD +++ +L L+I
Sbjct: 704  SFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMI 763

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+ + ++    T    L MTATPIPRTL +   G  DIS I   PA R  IK
Sbjct: 764  IDEEHRFGVRHKERIKALQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIK 823

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++P +  + + E +   +  G + Y++   +   +        +    L     + +A
Sbjct: 824  TFLLPKSD-ETIKEAILREILRGGQVYYLHNDVASIEA-----AADTLRELVGE--ARVA 875

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M++ +   VM+ F +    +L+A+T+IE GIDV +A+ III  A+ FG+AQLHQL
Sbjct: 876  VAHGQMNERELSVVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQL 935

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR    + C L+      LS ++  RL+ +        GF++A EDL+ R  GEIL
Sbjct: 936  RGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEIL 995

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            G +QSG  + +     +   +LE A    K    + P L + 
Sbjct: 996  GKEQSGNMQTIGFGLYMD--MLERATNAIKQ--GKTPSLATP 1033


>gi|326566625|gb|EGE16767.1| transcription-repair coupling factor [Moraxella catarrhalis BC1]
          Length = 1184

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 151/462 (32%), Positives = 237/462 (51%), Gaps = 19/462 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     + L     +A ++  +  R+  K   GI  +++    +       F  T  Q  
Sbjct: 586  WEKAKLKALEQIHDVAAELLNVQARRNAK--SGISFDIDMSQYELFASQFAFEETIDQAE 643

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV+AG Q  ++ P  +LA QH +
Sbjct: 644  AIHAVMHDMKQSKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHED 703

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                   +  I +E ++    + H+   L  +A G   I+IGTH L QD +++ +L L+I
Sbjct: 704  SFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMI 763

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+ + ++    T    L MTATPIPRTL +   G  DIS I   PA R  IK
Sbjct: 764  IDEEHRFGVRHKERIKALQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIK 823

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++P +  + + E +   +  G + Y++   +   +        +    L     + +A
Sbjct: 824  TFLLPKSD-ETIKEAILREILRGGQVYYLHNDVASIEA-----AADTLRELVGE--ARVA 875

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M++ +   VM+ F +    +L+A+T+IE GIDV +A+ III  A+ FG+AQLHQL
Sbjct: 876  VAHGQMNERELSVVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQL 935

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR    + C L+      LS ++  RL+ +        GF++A EDL+ R  GEIL
Sbjct: 936  RGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEIL 995

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            G +QSG  + +     +   +LE A    K    + P L + 
Sbjct: 996  GKEQSGNMQTIGFGLYMD--MLERATNAIKQ--GKTPSLATP 1033


>gi|326559271|gb|EGE09699.1| transcription-repair coupling factor [Moraxella catarrhalis 103P14B1]
 gi|326560196|gb|EGE10584.1| transcription-repair coupling factor [Moraxella catarrhalis 7169]
 gi|326564935|gb|EGE15137.1| transcription-repair coupling factor [Moraxella catarrhalis 46P47B1]
 gi|326573327|gb|EGE23295.1| transcription-repair coupling factor [Moraxella catarrhalis 101P30B1]
 gi|326576857|gb|EGE26763.1| transcription-repair coupling factor [Moraxella catarrhalis O35E]
          Length = 1184

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 151/462 (32%), Positives = 237/462 (51%), Gaps = 19/462 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     + L     +A ++  +  R+  K   GI  +++    +       F  T  Q  
Sbjct: 586  WEKAKLKALEQIHDVAAELLNVQARRNAK--SGISFDIDMSQYELFASQFAFEETIDQAE 643

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV+AG Q  ++ P  +LA QH +
Sbjct: 644  AIHAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHED 703

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                   +  I +E ++    + H+   L  +A G   I+IGTH L QD +++ +L L+I
Sbjct: 704  SFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMI 763

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+ + ++    T    L MTATPIPRTL +   G  DIS I   PA R  IK
Sbjct: 764  IDEEHRFGVRHKERIKALQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIK 823

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++P +  + + E +   +  G + Y++   +   +        +    L     + +A
Sbjct: 824  TFLLPKSD-ETIKEAILREILRGGQVYYLHNDVASIEA-----AADTLRELVGE--ARVA 875

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M++ +   VM+ F +    +L+A+T+IE GIDV +A+ III  A+ FG+AQLHQL
Sbjct: 876  VAHGQMNERELSVVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQL 935

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR    + C L+      LS ++  RL+ +        GF++A EDL+ R  GEIL
Sbjct: 936  RGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEIL 995

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            G +QSG  + +     +   +LE A    K    + P L + 
Sbjct: 996  GKEQSGNMQTIGFGLYMD--MLERATNAIKQ--GKTPSLATP 1033


>gi|228963154|ref|ZP_04124324.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796539|gb|EEM43977.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 1067

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 231/448 (51%), Gaps = 17/448 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 463 DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 520

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 521 RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 580

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 581 ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGTHRILSKDVTYKDLGLL 640

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 641 IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 700

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 701 QTYVVEYN-PALMREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPD--ARV 752

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 753 TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 812

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 813 LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 872

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARK 661
           LG +Q G    +     L+  +L+ A +
Sbjct: 873 LGAEQHGFIDSVGFD--LYSQMLKDAIE 898


>gi|213965538|ref|ZP_03393733.1| transcription-repair coupling factor [Corynebacterium amycolatum
            SK46]
 gi|213951922|gb|EEB63309.1| transcription-repair coupling factor [Corynebacterium amycolatum
            SK46]
          Length = 1215

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 149/473 (31%), Positives = 238/473 (50%), Gaps = 18/473 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W S  R+       +A ++  L   +Q     G     +    Q++  N PF+ T+ Q 
Sbjct: 599  DWKSTKRKARGAVREIAEELVKLYAERQAA--PGHAFAPDTPWQQEMEDNFPFTETEDQL 656

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI +I  DM +   M R+L GDVG GKT VAL A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 657  QAIDEIKSDMEKPVPMDRVLIGDVGYGKTEVALRAAFKAVQDGRQVAVLVPTTLLAQQHL 716

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  +   + +  ++        R+ LE + +G   I+IGTH L Q  +Q+ +L LV
Sbjct: 717  TTFTQRMEGFPVTIRGLSRFTSPKDSREVLEGLKNGTVDIVIGTHRLLQTGVQWKELGLV 776

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +        VL M+ATPIPRTL ++  G  ++S+I   P  R P+
Sbjct: 777  IVDEEQRFGVEHKEHIKALRHHVDVLTMSATPIPRTLEMSIAGIREMSQILTPPQDRHPV 836

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   ++  L    + +++  ++E         V +   +L     + +
Sbjct: 837  LTYVGAQSD-KQVAAAIRRELLRDGQVFYLHNKVETID-----KVAQNIRNLVPE--ARV 888

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E  +D F      +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQ
Sbjct: 889  VVAHGQMGEEQLERTVDGFWQREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQ 948

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E +    LY     L++ SY RLS +    D   G  +A +DL+ R  G I
Sbjct: 949  LRGRVGRSRERAYAYFLYPENQTLTETSYDRLSTIAQNNDLGAGMAVAMKDLEMRGAGNI 1008

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD-PDLTSVRGQSIRILL 685
            LG +QSG         +++  L+  A    K +   + PD +    + +RI L
Sbjct: 1009 LGAEQSGHI--AGVGFDMYVRLVGEAVAALKAVADGETPDASDNEPKEVRIDL 1059


>gi|228905850|ref|ZP_04069748.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL 200]
 gi|228853790|gb|EEM98549.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL 200]
          Length = 1176

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 231/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGTHRILSKDVAYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|224543056|ref|ZP_03683595.1| hypothetical protein CATMIT_02256 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523996|gb|EEF93101.1| hypothetical protein CATMIT_02256 [Catenibacterium mitsuokai DSM
           15897]
          Length = 1150

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 146/489 (29%), Positives = 241/489 (49%), Gaps = 34/489 (6%)

Query: 193 LLQKK----SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           L++K       P    A     +P+ AK+      AR R   D L    I L   R +  
Sbjct: 529 LIRKYSSRDGKPPRIHAL---GSPKWAKE-----KARVRQKVDGLADDLINLYAERMR-- 578

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            + G     +G +  +      +  T  Q  A+++I +DM     M R+L GDVG GKT 
Sbjct: 579 -QPGFAFEPDGDLQLEFESEFGYELTPDQAQAVEEIKKDMETPRPMDRLLCGDVGFGKTE 637

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL A   A+ +  Q   + P  IL+ QHY  ++K  +   + + ++        +++ L
Sbjct: 638 VALRACFKAIVSKKQCAFLCPTTILSSQHYRTMQKRFEKFPVNIALLNRFTTTKEKKQIL 697

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             +  G   +++GTH +    +++  L L+ +DE+ RFGV+Q+ K+        VL +TA
Sbjct: 698 SDLKEGNIDLLVGTHRILSKDVEFKDLGLLCIDEEQRFGVRQKEKIKNLRKTIDVLTLTA 757

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAY 486
           TPIPRTL ++ +G   +S+I   P  R P++T +   +   I +VIE     LS   + +
Sbjct: 758 TPIPRTLQMSIMGIRGLSQIETPPLNRLPVQTYVSEKSWALIKQVIE---RELSRNGQVF 814

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           ++  + E   E           +L  H  + I + HG+M   + E VM  F      +L+
Sbjct: 815 YLHNRTENIYEIAS-----TLQTLLPH--ARIGVGHGQMDKTELEDVMTDFVEKKYDILV 867

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNS 604
            TT+IE GID+ +A+ IIIENA+ FGLAQL+Q++GRVGR   I+   LLY     +++ +
Sbjct: 868 CTTIIETGIDIPNANTIIIENADKFGLAQLYQIKGRVGRSARIAYAYLLYTKDRAMTEEA 927

Query: 605 YTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
             RL+ +K       G+ IA  DL  R  G+ILG +Q+G         +++  +L+ A  
Sbjct: 928 QKRLTAIKEFTQLGSGYKIAMRDLSIRGSGDILGGEQAGFID--QVGFDMYMKILQDAID 985

Query: 662 DAKHILTQD 670
           + +  + +D
Sbjct: 986 EKQGKIKED 994


>gi|75759615|ref|ZP_00739701.1| Transcription-repair coupling factor [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
 gi|74492906|gb|EAO56036.1| Transcription-repair coupling factor [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
          Length = 1186

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 231/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 582  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 639

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 640  RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 699

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 700  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGTHRILSKDVTYKDLGLL 759

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 760  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 819

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 820  QTYVVEYN-PALMREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPD--ARV 871

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 872  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 931

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 932  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 991

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 992  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1017


>gi|255524039|ref|ZP_05391001.1| transcription-repair coupling factor [Clostridium carboxidivorans P7]
 gi|296186896|ref|ZP_06855297.1| transcription-repair coupling factor [Clostridium carboxidivorans P7]
 gi|255512326|gb|EET88604.1| transcription-repair coupling factor [Clostridium carboxidivorans P7]
 gi|296048610|gb|EFG88043.1| transcription-repair coupling factor [Clostridium carboxidivorans P7]
          Length = 1173

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 137/452 (30%), Positives = 235/452 (51%), Gaps = 18/452 (3%)

Query: 231  DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            +E+    + L  +R   K       + +    ++     P+  T  Q ++I+DI  DM  
Sbjct: 589  EEIAEDLVKLYAVRSTLKG---YKYSKDTVWQKQFEEEFPYEETPDQVTSIEDIKSDMES 645

Query: 291  KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
               M R+L GDVG GKT VA+ A   AV  G Q  ++ P  ILAQQHY    +   +  +
Sbjct: 646  DKPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVALLVPTTILAQQHYNNFVQRFSDFPV 705

Query: 351  IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +++I+     + ++  ++ +  G+  I+IGTH + Q  +Q+  L L+IVDE+ RFGV  
Sbjct: 706  KIDMISRFRTTSQQKATMKALKAGEIDILIGTHRIIQKDVQFKDLGLLIVDEEQRFGVTH 765

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            + K+ +      VL ++ATPIPRTL ++ +G  DIS I   P  R P++T ++  N    
Sbjct: 766  KEKIKKMKKNIDVLTLSATPIPRTLHMSLVGVRDISVIETPPEERYPVQTYVVEYNE-QL 824

Query: 471  VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            + + +   L+ G + Y++  ++E  KE            L     + +A+ HG+M + + 
Sbjct: 825  IRDAILRELNRGGQVYFVYNRVENIKEMASYM-----AKLVPE--ARVAVAHGQMQEREL 877

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E+++  F      +L+ATT+IE G+D+ + + +II +++  GL+QL+QLRGRVGR   ++
Sbjct: 878  ENIIVDFMKNEYDILVATTIIETGMDIQNVNTMIIYDSDKMGLSQLYQLRGRVGRTNRMA 937

Query: 591  SCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
             C L Y     L++ +  RL  +K+      GF IA +DL+ R  G ++G  Q G    +
Sbjct: 938  YCYLTYRKDKILTEVAEKRLKAIKDFTELGSGFKIALKDLEIRGAGNMMGSSQHGHMASV 997

Query: 646  IAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
                 L+  +LE   K  +  + ++P  T+V 
Sbjct: 998  GYD--LYCRMLEDTIKLVRGDIDKEPVETTVE 1027


>gi|228937356|ref|ZP_04100003.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            berliner ATCC 10792]
 gi|228976812|ref|ZP_04137225.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407]
 gi|228782908|gb|EEM31073.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407]
 gi|228822314|gb|EEM68295.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
            berliner ATCC 10792]
          Length = 1183

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 231/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 579  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 636

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 637  RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 696

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 697  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTIDIVIGTHRILSKDVTYKDLGLL 756

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 757  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 816

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 817  QTYVVEYN-PALMREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPD--ARV 868

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 869  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 928

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 929  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 988

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 989  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1014


>gi|326570293|gb|EGE20338.1| transcription-repair coupling factor [Moraxella catarrhalis BC8]
          Length = 1184

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 151/462 (32%), Positives = 237/462 (51%), Gaps = 19/462 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     + L     +A ++  +  R+  K   GI  +++    +       F  T  Q  
Sbjct: 586  WEKAKLKALEQIHDVAAELLNVQARRNAK--SGISFDIDMSQYELFASQFAFEETIDQAE 643

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV+AG Q  ++ P  +LA QH +
Sbjct: 644  AIHAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHED 703

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                   +  I +E ++    + H+   L  +A G   I+IGTH L QD +++ +L L+I
Sbjct: 704  SFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMI 763

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+ + ++    T    L MTATPIPRTL +   G  DIS I   PA R  IK
Sbjct: 764  IDEEHRFGVRHKERIKALQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIK 823

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++P +  + + E +   +  G + Y++   +   +        +    L     + +A
Sbjct: 824  TFLLPKSD-ETIKEAILREILRGGQVYYLHNDVASIEA-----AADTLRELVGE--ARVA 875

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M++ +   VM+ F +    +L+A+T+IE GIDV +A+ III  A+ FG+AQLHQL
Sbjct: 876  VAHGQMNERELSVVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQL 935

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR    + C L+      LS ++  RL+ +        GF++A EDL+ R  GEIL
Sbjct: 936  RGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEIL 995

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            G +QSG  + +     +   +LE A    K    + P L + 
Sbjct: 996  GKEQSGNMQTIGFGLYMD--MLERATNAIKQ--GKTPSLATP 1033


>gi|326567865|gb|EGE17966.1| transcription-repair coupling factor [Moraxella catarrhalis 12P80B1]
          Length = 1184

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 151/462 (32%), Positives = 237/462 (51%), Gaps = 19/462 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     + L     +A ++  +  R+  K   GI  +++    +       F  T  Q  
Sbjct: 586  WEKAKLKALEQIHDVAAELLNVQARRNAK--SGISFDIDMSQYELFASQFAFEETIDQAE 643

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV+AG Q  ++ P  +LA QH +
Sbjct: 644  AIHAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHED 703

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                   +  I +E ++    + H+   L  +A G   I+IGTH L QD +++ +L L+I
Sbjct: 704  SFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMI 763

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+ + ++    T    L MTATPIPRTL +   G  DIS I   PA R  IK
Sbjct: 764  IDEEHRFGVRHKERIKALQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIK 823

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++P +  + + E +   +  G + Y++   +   +        +    L     + +A
Sbjct: 824  TFLLPKSD-ETIKEAILREILRGGQVYYLHNDVASIEA-----AADTLRELVGE--ARVA 875

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M++ +   VM+ F +    +L+A+T+IE GIDV +A+ III  A+ FG+AQLHQL
Sbjct: 876  VAHGQMNERELSVVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQL 935

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR    + C L+      LS ++  RL+ +        GF++A EDL+ R  GEIL
Sbjct: 936  RGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEIL 995

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            G +QSG  + +     +   +LE A    K    + P L + 
Sbjct: 996  GKEQSGNMQTIGFGLYMD--MLERATNAIKQ--GKTPSLATP 1033


>gi|306832490|ref|ZP_07465642.1| transcription-repair coupling factor [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304425390|gb|EFM28510.1| transcription-repair coupling factor [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 1170

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 237/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +  + ++   +  F  
Sbjct: 560 KLNDGRFQKTKQKVSKQVEDIADDLLKLYA--ERSQLKGFAFSPDDDLQREFDEDFAFVE 617

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM +   M R+L GDVG GKT VA+ A   AV+   Q  ++ P  +L
Sbjct: 618 TEDQLRSIKEIKHDMEEDKPMDRLLVGDVGFGKTEVAMRAAFKAVKDHKQVAVLVPTTVL 677

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY    +  +N  + V++++    +  +   L+++  GQ  IIIGTH L    + + 
Sbjct: 678 AQQHYTNFSERFENYPVTVDVLSRFRSKKEQNDTLDKLKKGQVDIIIGTHRLLSKDVDFA 737

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 738 DLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 797

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + +++  +++           ++ + L E 
Sbjct: 798 NRYPVQTYVLETN-PGLIREAIIREIDRGGQVFYVYNRVDTID--------QKVSELQEL 848

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F +G   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 849 VPEASIGFVHGQMSEIQLENTLMDFIDGVYDVLVATTIIETGVDISNVNTLFIENADHMG 908

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 909 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLDAIKGFTELGSGFKIAMRDLSI 968

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 969 RGAGNILGASQSGFID--SVGFEMYSQLLEEA 998


>gi|75908979|ref|YP_323275.1| transcription-repair coupling factor [Anabaena variabilis ATCC 29413]
 gi|75702704|gb|ABA22380.1| transcription-repair coupling factor [Anabaena variabilis ATCC 29413]
          Length = 1188

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 145/449 (32%), Positives = 235/449 (52%), Gaps = 18/449 (4%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
             +  R R A  +L    + L   R Q +         +    +++  + P+  T  Q  A
Sbjct: 592  NTKNRVRKAIKKLAVDLLKLYAARSQQQG---FAYPQDMPWQEEMEDSFPYQATTDQLKA 648

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            ++D+ +DM     M R++ GDVG GKT VA+ A+  AV +G Q  ++AP  IL QQHY  
Sbjct: 649  VQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTSGKQVALLAPTTILTQQHYHT 708

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            IK+      + V ++        RR   +R+A G+  I++GTH L   S+ +  L L+++
Sbjct: 709  IKERFAPYPVNVGLLNRFRTAEERRNIQKRLATGELDIVVGTHQLLGKSVNFKDLGLLVI 768

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+ RFGV Q+ K+    T   VL ++ATPIPRTL ++  G  ++S IT  P  R+PIKT
Sbjct: 769  DEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSLITTPPPTRRPIKT 828

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             + P N  + V   ++  L  G + +++ P+++  +E          N       +  AI
Sbjct: 829  HLSPRN-PESVRSAIRQELDRGGQVFYVVPRVDGIEEI-------TANLREMVPGARFAI 880

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+M + + ES M +F NG   +L+ TT+IE G+D+   + I+IE+A  FGL+QL+QLR
Sbjct: 881  AHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILIEDAHRFGLSQLYQLR 940

Query: 581  GRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
            GRVGR    +   L Y     LS  +  RL  ++       G+ +A  D++ R  G +LG
Sbjct: 941  GRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLG 1000

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             +QSG  + +     L+  +LE + ++ +
Sbjct: 1001 AEQSGQMEAIGFD--LYMEMLEESIREIR 1027


>gi|326575775|gb|EGE25698.1| transcription-repair coupling factor [Moraxella catarrhalis CO72]
          Length = 1184

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 151/462 (32%), Positives = 237/462 (51%), Gaps = 19/462 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     + L     +A ++  +  R+  K   GI  +++    +       F  T  Q  
Sbjct: 586  WEKAKLKALEQIHDVAAELLNVQARRNAK--SGISFDIDMSQYELFASQFAFEETIDQAE 643

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV+AG Q  ++ P  +LA QH +
Sbjct: 644  AIHAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHED 703

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                   +  I +E ++    + H+   L  +A G   I+IGTH L QD +++ +L L+I
Sbjct: 704  SFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMI 763

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+ + ++    T    L MTATPIPRTL +   G  DIS I   PA R  IK
Sbjct: 764  IDEEHRFGVRHKERIKALQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIK 823

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++P +  + + E +   +  G + Y++   +   +        +    L     + +A
Sbjct: 824  TFLLPKSD-ETIKEAILREILRGGQVYYLHNDVASIEA-----AADTLRELVGE--ARVA 875

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M++ +   VM+ F +    +L+A+T+IE GIDV +A+ III  A+ FG+AQLHQL
Sbjct: 876  VAHGQMNERELSVVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQL 935

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR    + C L+      LS ++  RL+ +        GF++A EDL+ R  GEIL
Sbjct: 936  RGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEIL 995

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            G +QSG  + +     +   +LE A    K    + P L + 
Sbjct: 996  GKEQSGNMQTIGFGLYMD--MLERATNAIKQ--GKTPSLATP 1033


>gi|306992247|gb|ADN19240.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 442

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 169/446 (37%), Positives = 264/446 (59%), Gaps = 8/446 (1%)

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVL 185
           GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL   +  +
Sbjct: 2   GKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEI 61

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+AL LM++
Sbjct: 62  EEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMALFLMKR 118

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++QGDVGSG
Sbjct: 119 SVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQGDVGSG 176

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  ++++
Sbjct: 177 KTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKK 236

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LTQK   P VL+
Sbjct: 237 EVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQKGENPDVLV 296

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +G++ 
Sbjct: 297 MTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQV 356

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F NG   
Sbjct: 357 YVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVNGKID 416

Query: 544 LLIATTVIEVGIDVVDASIIIIENAE 569
           +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 417 ILVSTTVIEVGVNVPNATVMIVENAE 442


>gi|257877903|ref|ZP_05657556.1| transcription-repair coupling factor [Enterococcus casseliflavus
            EC20]
 gi|257812069|gb|EEV40889.1| transcription-repair coupling factor [Enterococcus casseliflavus
            EC20]
          Length = 1172

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 139/446 (31%), Positives = 237/446 (53%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A  + LL  +++ +   G     +    ++     P+S T  Q 
Sbjct: 568  EWAKTKRKVTAKIEDIADDLILLYAKRESE--KGYAFQPDDAYQKEFEDAFPYSETDDQL 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 626  RSTAEIKRDMEKEKPMDRLLVGDVGFGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +    +   + V +++    +  + + +E++  GQ  I++GTH L    +++  L L+
Sbjct: 686  ETMVDRFEGFPVNVGVLSRFRTKKQQNETIEQVRKGQVDILVGTHRLLSKDVEFADLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746  VIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++ +N    V E ++  ++ G + +++  +++  +       VE   +L     + I
Sbjct: 806  QTYVMEMN-PGAVREAIQREMARGGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 858  AYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 917

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSNRVAYAYFMYEQQKVLNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G         +++  +L  A
Sbjct: 978  LGAQQHGFID--AVGFDMYSQMLSEA 1001


>gi|306992375|gb|ADN19304.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 446

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 163/450 (36%), Positives = 263/450 (58%), Gaps = 8/450 (1%)

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL- 179
            +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL 
Sbjct: 1   EEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALK 60

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+A
Sbjct: 61  DYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMA 117

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           L L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++Q
Sbjct: 118 LFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQ 175

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++
Sbjct: 176 GDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSI 235

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K  
Sbjct: 236 SPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGE 295

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     +
Sbjct: 296 NPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEV 355

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSF 537
            +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F
Sbjct: 356 KKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEF 415

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            N    +L++TTVIEVG++V +A+++I+EN
Sbjct: 416 VNREIDILVSTTVIEVGVNVPNATVMIVEN 445


>gi|225873674|ref|YP_002755133.1| transcription-repair coupling factor [Acidobacterium capsulatum ATCC
            51196]
 gi|225794589|gb|ACO34679.1| transcription-repair coupling factor [Acidobacterium capsulatum ATCC
            51196]
          Length = 1189

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 154/486 (31%), Positives = 251/486 (51%), Gaps = 19/486 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +A ++  L    Q K   G   + + +  ++   +  ++ T  Q 
Sbjct: 588  QWAKTKARVKKAMQDMADELLKLYA--QRKAAQGHAYSADNEFQREFEDSFDYNETDDQL 645

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI DI +DM     M R+L GDVG GKT VA+ A   AV+ G Q  ++ P  +L+ QHY
Sbjct: 646  SAIADIKRDMESTTPMDRLLCGDVGYGKTEVAMRAAFKAVQDGKQVAVLTPTTVLSFQHY 705

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  KK  +   I +E+++       ++  +ER+  G+  I+IGTH L    ++++ + L+
Sbjct: 706  ETFKKRFRQFPIHIEMLSRFRTAKEQKLIVERVEAGEIDILIGTHRLLSKDLKFHDIGLL 765

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L Q      VL M+ATPIPRTL ++ +G  D+S I   P  R  I
Sbjct: 766  IVDEEQRFGVRHKERLKQLRAQLDVLTMSATPIPRTLHMSLVGLRDMSVIETPPKDRMAI 825

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T++   +    V   ++V L  G + Y++  ++E   E     +  +   L  H  + I
Sbjct: 826  QTIVAKFDE-KLVRSAVEVELERGGQIYFVHNRVETIYE-----IAAKIQELVPH--ARI 877

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M + + E VM +F N    +L+AT++IE G+D+  A+ I+I  A+  GL++L+Q
Sbjct: 878  TVGHGQMGEAELEKVMLAFMNHEYDVLVATSIIENGLDIPLANTILINRADRHGLSELYQ 937

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L+  P   L++ +  RL+ LK   D   GF IA  DL+ R  G +
Sbjct: 938  LRGRVGRSNRRAYAYLMIPPEQELTEIARRRLAALKEFSDLGAGFKIAALDLELRGAGNM 997

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK-HILTQDPDLTSVRGQSIRI-LLYLYQYN 691
            LG +QSG  +      EL+ ++LE A    K     + P      G  +RI   Y+ + N
Sbjct: 998  LGGEQSGHIE--AVGFELYTTMLEEAVNKMKGQETVERPVTQLSLGIPLRIDDSYIPEEN 1055

Query: 692  EAFQFI 697
            +  +  
Sbjct: 1056 QRLRMY 1061


>gi|325568171|ref|ZP_08144612.1| transcription-repair coupling factor [Enterococcus casseliflavus ATCC
            12755]
 gi|325158372|gb|EGC70523.1| transcription-repair coupling factor [Enterococcus casseliflavus ATCC
            12755]
          Length = 1172

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 139/446 (31%), Positives = 237/446 (53%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A  + LL  +++ +   G     +    ++     P+S T  Q 
Sbjct: 568  EWAKTKRKVTAKIEDIADDLILLYAKRESE--KGYAFQPDDAYQKEFEDAFPYSETDDQL 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 626  RSTAEIKRDMEKEKPMDRLLVGDVGFGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +    +   + V +++    +  + + +E++  GQ  I++GTH L    +++  L L+
Sbjct: 686  ETMVDRFEGFPVNVGVLSRFRTKKQQNETIEQVRKGQVDILVGTHRLLSKDVEFADLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746  VIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++ +N    V E ++  ++ G + +++  +++  +       VE   +L     + I
Sbjct: 806  QTYVMEMN-PGAVREAIQREMARGGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 858  AYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 917

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSNRVAYAYFMYEQQKVLNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G         +++  +L  A
Sbjct: 978  LGAQQHGFID--AVGFDMYSQMLSEA 1001


>gi|323490992|ref|ZP_08096186.1| transcription-repair coupling factor [Planococcus donghaensis MPA1U2]
 gi|323395348|gb|EGA88200.1| transcription-repair coupling factor [Planococcus donghaensis MPA1U2]
          Length = 1177

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 154/552 (27%), Positives = 270/552 (48%), Gaps = 28/552 (5%)

Query: 130  KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +++K+   +    YI H            + +L +G     +  I+ +A  +L V  + I
Sbjct: 492  ERIKSYSEIKPGDYIVHIHH--GIGRFVGIETLESGGVHKDYLHIVYKADDKLFVPVDKI 549

Query: 190  EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
              DL+QK       E         K    EW     +  A  + +A  +  L   ++   
Sbjct: 550  --DLIQKYIASEEKE-----PKLHKMGGAEWKKTRTKVSAAVQDIADDLIKLYAEREA-- 600

Query: 250  EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
              G   + E  + ++     P+  T  Q  +I ++ +DM  +  M R++ GDVG GKT V
Sbjct: 601  LRGFAFSEEQDMQRQFEAEFPYEETTDQLRSINEVKRDMENERPMDRLICGDVGYGKTEV 660

Query: 310  ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            A+ A   AV  G Q   + P  ILAQQH+E + +  +   I V +++    +  + + ++
Sbjct: 661  AIRAAFKAVLDGKQVAFLVPTTILAQQHFETMSERFKEYPITVGLMSRFRSKKQQTETVK 720

Query: 370  RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             + +G   I++GTH +    + Y  L L+I+DE+ RFGV  + K+ Q  T   VL +TAT
Sbjct: 721  GLKNGSVDIVVGTHRILSKDMHYKDLGLLIIDEEQRFGVTHKEKIKQMKTNVDVLTLTAT 780

Query: 430  PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            PIPRTL ++ +G  D+S I   PA R P+++ ++  N    V E ++  ++ G + +++ 
Sbjct: 781  PIPRTLHMSMIGVRDLSVIETPPANRFPVQSYVMEHNG-ALVREAIEREMARGGQVFYLY 839

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +++     +    VE    L     + +   HG+MS+ + ESV+ SF +G   +L+ TT
Sbjct: 840  NRVD-----DMTRKVEEIQQLVPE--ARVGYAHGQMSETELESVILSFLDGDYDVLVTTT 892

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
            +IE GID+ + + +I+ NA+  GL+QL+QLRGRVGR   ++    +Y     L+  +  R
Sbjct: 893  IIETGIDIPNVNTLIVYNADRMGLSQLYQLRGRVGRSSRVAYAYFMYQRDKVLTDVAEKR 952

Query: 608  LSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            L  +K       GF IA  DL  R  G +LG +Q G    +     L+  +L+ A  + +
Sbjct: 953  LMAIKEFTELGSGFKIAMRDLTIRGAGNLLGSQQHGFIDSVGFD--LYSQMLQEAIDERQ 1010

Query: 665  HILTQD--PDLT 674
              + ++  P++ 
Sbjct: 1011 TGVKKEVVPEIE 1022


>gi|289624077|ref|ZP_06457031.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 571

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 153/440 (34%), Positives = 223/440 (50%), Gaps = 17/440 (3%)

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
                            PF  T  Q++ I+ +  DM     M R++ GDVG GKT VA+ 
Sbjct: 5   YAFADPKADYATFSAGFPFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMR 64

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           A   AV  G Q  I+ P  +LAQQHY   +    +  + VE+++          A+  +A
Sbjct: 65  AAFIAVHGGRQVAILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLA 124

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            G+  I+IGTH L QD ++   L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIP
Sbjct: 125 EGKIDIVIGTHKLLQDDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIP 184

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL +   G  D+S I   PA R  ++T ++  N+   + E L   L  G + Y++   +
Sbjct: 185 RTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDV 243

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +  +             L     + I I HG+M + + E VM  F +    +LIA+T+IE
Sbjct: 244 KTIE-----KCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIE 296

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV 610
            GIDV  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  
Sbjct: 297 TGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEA 356

Query: 611 LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           + NT+D   GF++A  DL+ R  GE+LG  QSG          L+  +LE A K  +   
Sbjct: 357 IANTQDLGAGFVLATNDLEIRGAGELLGDGQSGQI--QAVGFTLYMEMLERAVKSIRK-- 412

Query: 668 TQDPDLTSVRGQSIRILLYL 687
            + P+L    G    I L +
Sbjct: 413 GEQPNLDQPLGGGPEINLRV 432


>gi|291561352|emb|CBL40151.1| transcription-repair coupling factor [butyrate-producing bacterium
            SS3/4]
          Length = 1201

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 139/446 (31%), Positives = 227/446 (50%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT    +       +A ++  L   +Q  +        +    ++     P+  T  Q 
Sbjct: 599  EWTKTKTKVRTAVREIAKELVELYAARQDAEG--FQYGPDTVWQKEFEEMFPYDETDDQL 656

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI D  +DM  K  M R++ GDVG GKT +AL A   AV+   Q V + P  ILAQQ Y
Sbjct: 657  TAIDDTKRDMESKKIMDRLICGDVGYGKTEIALRAAFKAVQEEKQVVYLVPTTILAQQIY 716

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  ++  + V++++        +K +E +  G   II+GTH +    +Q+  L L+
Sbjct: 717  NTFVQRMKDFPVRVDMMSRFRTPGEMKKTVEGLKKGYVDIIVGTHRVLSKDVQFKNLGLL 776

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S + E P  R PI
Sbjct: 777  IVDEEQRFGVTHKEKIKQMKQNVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPVDRVPI 836

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E +   L  G + Y++  ++    E           SL     +++
Sbjct: 837  QTYVMEYND-EMIREAIHRELGRGGQVYYVYNRVNNIDEVANH-----VASLVPD--ANV 888

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++   E +M  F NG   +L++TT+IE G+D+ +A+ +II++A+  GL+QL+Q
Sbjct: 889  AFAHGQMNEHQLEKIMLDFINGEIDVLVSTTIIETGLDIPNANTMIIQDADRLGLSQLYQ 948

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            +RGR+GR    S   L+Y     L +++  RL  ++       G  IA  DL+ R  G I
Sbjct: 949  IRGRIGRSNRTSFAFLMYKRDKMLKEDAEKRLQAIREFTELGSGIKIAMRDLEIRGAGNI 1008

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G  + +     L+  +L  A
Sbjct: 1009 LGAEQHGHMEAVGYD--LYCKMLNEA 1032


>gi|288904230|ref|YP_003429451.1| transcription repair coupling factor [Streptococcus gallolyticus
           UCN34]
 gi|325977207|ref|YP_004286923.1| transcription-repair coupling factor [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288730955|emb|CBI12499.1| Transcription repair coupling factor [Streptococcus gallolyticus
           UCN34]
 gi|325177135|emb|CBZ47179.1| transcription-repair coupling factor [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 1166

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 237/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +  + ++   +  F  
Sbjct: 556 KLNDGRFQKTKQKVSKQVEDIADDLLKLYA--ERSQLKGFAFSPDDDLQREFDEDFAFVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM +   M R+L GDVG GKT VA+ A   AV+   Q  ++ P  +L
Sbjct: 614 TEDQLRSIKEIKHDMEEDKPMDRLLVGDVGFGKTEVAMRAAFKAVKDHKQVAVLVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY    +  +N  + V++++    +  +   L+++  GQ  IIIGTH L    + + 
Sbjct: 674 AQQHYTNFSERFENYPVTVDVLSRFRSKKEQNDTLDKLKKGQVDIIIGTHRLLSKDVDFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + +++  +++           ++ + L E 
Sbjct: 794 NRYPVQTYVLETN-PGLIREAIIREIDRGGQVFYVYNRVDTID--------QKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F +G   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 845 VPEASIGFVHGQMSEIQLENTLMDFIDGVYDVLVATTIIETGVDISNVNTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLDAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 965 RGAGNILGASQSGFID--SVGFEMYSQLLEEA 994


>gi|257868298|ref|ZP_05647951.1| transcription-repair coupling factor [Enterococcus casseliflavus
            EC30]
 gi|257874429|ref|ZP_05654082.1| transcription-repair coupling factor [Enterococcus casseliflavus
            EC10]
 gi|257802412|gb|EEV31284.1| transcription-repair coupling factor [Enterococcus casseliflavus
            EC30]
 gi|257808593|gb|EEV37415.1| transcription-repair coupling factor [Enterococcus casseliflavus
            EC10]
          Length = 1172

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 139/446 (31%), Positives = 237/446 (53%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A  + LL  +++ +   G     +    ++     P+S T  Q 
Sbjct: 568  EWAKTKRKVTAKIEDIADDLILLYAKRESE--KGYAFQPDDAYQKEFEDAFPYSETDDQL 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 626  RSTAEIKRDMEKEKPMDRLLVGDVGFGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +    +   + V +++    +  + + +E++  GQ  I++GTH L    +++  L L+
Sbjct: 686  ETMVDRFEGFPVNVGVLSRFRTKKQQNETIEQVRKGQVDILVGTHRLLSKDVEFADLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746  VIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++ +N    V E ++  ++ G + +++  +++  +       VE   +L     + I
Sbjct: 806  QTYVMEMN-PGAVREAIQREMARGGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 858  AYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 917

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSNRVAYAYFMYEQQKVLNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G         +++  +L  A
Sbjct: 978  LGAQQHGFID--AVGFDMYSQMLSEA 1001


>gi|291522023|emb|CBK80316.1| transcription-repair coupling factor [Coprococcus catus GD/7]
          Length = 1178

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 143/452 (31%), Positives = 240/452 (53%), Gaps = 19/452 (4%)

Query: 219  EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EWT    + + A  EL    + L   R++ +  +  P   +    ++     P+  T+ Q
Sbjct: 577  EWTRTKTKVKGAVRELAMDLVKLYAARQESEGYVCGP---DTVWQREFEEMFPYEETQDQ 633

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              AI+   +DM     M R++ GDVG GKT VA+ A    V+ G Q  ++ P  ILAQQH
Sbjct: 634  LDAIEATKRDMESTKIMDRLVCGDVGFGKTEVAIRAAFKMVQEGRQCAVLVPTTILAQQH 693

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y    +  +   + + +++    +A ++K LE +  G+  I+IGTH L    +++  L L
Sbjct: 694  YNTFCQRMKEYPVNIGLLSRFRTKAEQKKTLEDLKAGRVDIVIGTHRLLSKDVEFKNLGL 753

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            ++VDE+ RFGV  + K+ +      VL +TATPIPRT+ ++ +G  D+S + E P  R+P
Sbjct: 754  LVVDEEQRFGVTHKEKIKKIKENVDVLTLTATPIPRTMHMSLIGIRDMSLLEEAPVDRQP 813

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            I+T ++  N  + + E +   L+ G + Y++  ++    E     +    + L     +S
Sbjct: 814  IQTYVMEYND-ELIREAIMRELARGGQVYYVYNRVNGIDE-----IAAGLSELVPD--AS 865

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A  HG+MS+ + E +M  F NG   +L++TT+IE G+D+ + + +II +A+  GL+QL+
Sbjct: 866  VAYAHGQMSERELEKIMYQFINGEIDVLVSTTIIETGLDISNVNTMIIHDADKLGLSQLY 925

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR    S   L+Y     L + +  RLS ++       G+ IA  DL+ R  G 
Sbjct: 926  QLRGRVGRSNRTSYAFLMYKRDKMLKEVAEKRLSAIREFTELGSGYRIAMRDLEIRGAGN 985

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            +LG +QSG  + +     L+  +L  A  +AK
Sbjct: 986  LLGERQSGHMEAVGYD--LYCKMLNQAVMEAK 1015


>gi|116626459|ref|YP_828615.1| transcription-repair coupling factor [Candidatus Solibacter usitatus
            Ellin6076]
 gi|116229621|gb|ABJ88330.1| transcription-repair coupling factor [Candidatus Solibacter usitatus
            Ellin6076]
          Length = 1141

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 159/488 (32%), Positives = 245/488 (50%), Gaps = 23/488 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT       A    +A ++  L      K   G   + +    ++      FSPT+ Q +
Sbjct: 551  WTRTKGRIKAKMRDMADELLKLYA--SRKMAEGFNYSSDSNWQREFEDAFEFSPTRDQLT 608

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI +I +DM     M R+L GDVG GKT V + A   A+  G Q V++AP  +LA QH+E
Sbjct: 609  AISEIKRDMESTQPMDRLLCGDVGYGKTEVVMRAAFKALGDGKQVVVLAPTTVLAFQHFE 668

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K+  Q   + VE+ +        +  L  +A G+  I IGTH L    +    L LV+
Sbjct: 669  TFKRRFQPFPVRVEMFSRFRSPKEIKAGLVDLAEGKIDIAIGTHRLLSQDVVMRDLGLVL 728

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV+ + +L Q   A  V+ M+ATPIPRTL ++ LG  D+S I   P  R  I 
Sbjct: 729  VDEEQRFGVKHKERLKQMKRAVDVISMSATPIPRTLHMSLLGLRDMSVIETPPKDRLAIH 788

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSI 518
            TV+ P  + + + + L++ L  G + Y++  +++        S+  R  SL E    + I
Sbjct: 789  TVVAPY-QPELIRQALELELGRGGQVYFLHNRVD--------SIWMRAASLQELVPGARI 839

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M + + E  M  F      +L+ TT+IE G+D+  A+ +IIENAE +GL++L+Q
Sbjct: 840  GVGHGQMGEAELEKTMLQFMRHEFDILVCTTIIENGLDIPLANTMIIENAERYGLSELYQ 899

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL  P   L++ +  RL+ LK   D   GF IA  DL+ R  G +
Sbjct: 900  LRGRVGRSNRRAYAYLLVPPDTELTEIARKRLAALKEFSDLGAGFKIAALDLELRGAGNL 959

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL---YLYQY 690
            LG +Q G    +      +  LLE   ++ K      P++ S    ++ I +   Y+   
Sbjct: 960  LGGEQHGHINSVGFD--TYVRLLEETVRELKGE-EVVPEIHSALNLNLDIRIPNEYIGDE 1016

Query: 691  NEAFQFIR 698
            N+  +  R
Sbjct: 1017 NQRLRAYR 1024


>gi|116626979|ref|YP_819598.1| transcription-repair coupling factor [Streptococcus thermophilus
           LMD-9]
 gi|116100256|gb|ABJ65402.1| Transcription-repair coupling factor (superfamily II helicase)
           [Streptococcus thermophilus LMD-9]
 gi|312277424|gb|ADQ62081.1| Transcription-repair coupling factor (Superfamily II helicase)
           [Streptococcus thermophilus ND03]
          Length = 1168

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 150/452 (33%), Positives = 234/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +    +       +  
Sbjct: 557 KLNDGRFQKTKQKVSKQVEDIADNLLKLYA--ERSQLKGFAFSPDDDNQRDFEDEFSYVE 614

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV  G Q  I+ P  +L
Sbjct: 615 TVDQLRSIKEIKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVL 674

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A QHY   K+  +N  + V+ ++    +  + + ++ +A G+  IIIGTH L    +++ 
Sbjct: 675 AHQHYMNFKERFENHAVEVDELSRFRSKKEQNETIKNLAKGRIDIIIGTHRLLSKDVKFS 734

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 735 DLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSIIETAPT 794

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + ++I  ++E           ++ + LHE 
Sbjct: 795 NRYPVQTYVMETN-PGLIREAILREMDRGGQIFYIYNRVETID--------QKVSELHEL 845

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + I  +HG+MS++  E+ +  F NG   +L+ATT+IE GID+ + + ++IENA+H G
Sbjct: 846 VPEARIGFVHGQMSEVMLENTLLDFLNGDYDILVATTIIETGIDIPNVNTLLIENADHMG 905

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+YHP   L++ S  RL  +K       GF IA  DL  
Sbjct: 906 LSTLYQLRGRVGRSNRIAYAYLMYHPDKVLTEVSEKRLDAIKGFTELGSGFKIAMRDLSI 965

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 966 RGAGNILGASQSGFID--SVGFEMYSQLLEEA 995


>gi|305665487|ref|YP_003861774.1| transcription-repair coupling factor [Maribacter sp. HTCC2170]
 gi|88710243|gb|EAR02475.1| transcription-repair coupling factor [Maribacter sp. HTCC2170]
          Length = 1172

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 136/451 (30%), Positives = 231/451 (51%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++  +  + +A  +  +  +++ +   G   + +  +  ++  +  +  T  Q  
Sbjct: 557 WKKLKQKTKSRVKQIAFDLIKVYAKRRLE--KGFQYDPDSYLQLELEASFIYEDTPDQGK 614

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D+ +DM  +  M R++ GDVG GKT VA+ A   AV+ G Q  I+ P  ILA QH+ 
Sbjct: 615 ATEDVKKDMESERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAILVPTTILAYQHHR 674

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +   + V+ +        +R+ LER+ +G+  IIIGTH L   ++++  L L+I
Sbjct: 675 TFSERLKELPVSVDYLNRFRTAKEKRETLERLENGKVDIIIGTHQLVNKNVKFKDLGLLI 734

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S I   P  R PI+
Sbjct: 735 VDEEQKFGVSVKDKLKSIKENVDVLTLTATPIPRTLQFSLMAARDLSVINTPPPNRYPIE 794

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + +I  N  + + + +   +  G + ++I  +IE  KE            L     + I 
Sbjct: 795 SNVIRFNE-EIIRDAVSYEIQRGGQIFFIHNRIENIKEVAG-----MLQRLVPD--AKIG 846

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+      E++M +F NG   +L++TT++E G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 847 IGHGQKDGKKLEALMLAFMNGEFDVLVSTTIVESGLDVTNANTIFINNANNFGLSDLHQM 906

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   ++  +  R+  L+       GF IA +DL+ R  G++L
Sbjct: 907 RGRVGRSNKKAFCYFITPPYEVMTNEARKRIQALEQFTELGSGFNIAMKDLEIRGAGDLL 966

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG    +      +  +L  A  + K 
Sbjct: 967 GGEQSGFINEIGFD--AYQKILAEAIDELKE 995


>gi|121605445|ref|YP_982774.1| transcription-repair coupling factor [Polaromonas naphthalenivorans
            CJ2]
 gi|120594414|gb|ABM37853.1| transcription-repair coupling factor [Polaromonas naphthalenivorans
            CJ2]
          Length = 1161

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 160/602 (26%), Positives = 261/602 (43%), Gaps = 38/602 (6%)

Query: 107  YRKTEMLKNV--FFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT 164
            +     L+    F    ++   G   + +N+                   + + V     
Sbjct: 432  HTGFSWLEESIDFVTETELFAAGVTIRRRNKRQEQVSDVEALIKDLSELNVGDPVVHSAH 491

Query: 165  GLSVDLFKKIIVEAL-----SRLPVLPEWIEKDLLQK---------KSFPSIAEAFNIIH 210
            G+    ++ +I   L        P L E++  +   K             S     +   
Sbjct: 492  GI--GRYRGLINLDLGEKNPDGSPALQEFLHLEYADKATLYVPVSQLHLISRYTGVSADE 549

Query: 211  NP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
             P  K    +W    R+        A ++  +  R+  ++             +    + 
Sbjct: 550  APLHKLGSGQWEKARRKAAEQIRDSAAELLNIYARRAAREG--HAFRYSPGDYEVFANDF 607

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
             F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A   A+  G Q  ++AP
Sbjct: 608  GFDETPDQSAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFIAITGGKQVALLAP 667

Query: 330  IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +LA+QHY+ +        + V  ++          A++ +A G   I++GTH L  ++
Sbjct: 668  TTLLAEQHYQTLVDRFAKWPVRVAEMSRFRSAKEITAAIKGLADGSVDIVVGTHKLLSET 727

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
             ++  L L+I+DE+HRFGV+ +  +        VL +TATPIPRTL +   G  D+S I 
Sbjct: 728  TKFKDLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSVIA 787

Query: 450  EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
              P  R  IKT +        + E +   L  G + Y++  ++E  +     +  ++   
Sbjct: 788  TAPQRRLAIKTFVRTEGN-GVIREAVLRELKRGGQVYFLHNEVETIE-----NRRQKLEE 841

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            L     + IAI HG+M + + E VM  F      +L+ +T+IE GIDV  A+ I++  A+
Sbjct: 842  LLPE--ARIAIAHGQMPERELERVMKDFVAQRFNVLLCSTIIETGIDVPSANTILMSRAD 899

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV---LKNTEDGFLIAEED 624
             FGLAQLHQLRGRVGR    +   L+      L+K +  RL     ++    GF +A  D
Sbjct: 900  KFGLAQLHQLRGRVGRSHHQAYAYLMVPDLEGLTKQASQRLDAIQQMEELGSGFYLAMHD 959

Query: 625  LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
            L+ R  GE+LG  QSG    +  Q  L++ +L  A    K    ++PDL S    +  I 
Sbjct: 960  LEIRGTGEVLGENQSGNMLEIGFQ--LYNEMLGEAVASLKA--GREPDLLSPLSVTTEIN 1015

Query: 685  LY 686
            L+
Sbjct: 1016 LH 1017


>gi|306992455|gb|ADN19344.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992459|gb|ADN19346.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 442

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 167/446 (37%), Positives = 264/446 (59%), Gaps = 8/446 (1%)

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVL 185
           GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL   +  +
Sbjct: 2   GKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEV 61

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+AL LM++
Sbjct: 62  EEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMALFLMKR 118

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++QGDVGSG
Sbjct: 119 SVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGDVGSG 176

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  ++++
Sbjct: 177 KTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKK 236

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K   P VL+
Sbjct: 237 EVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENPDVLV 296

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +G++ 
Sbjct: 297 MTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQV 356

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F NG   
Sbjct: 357 YVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVNGKID 416

Query: 544 LLIATTVIEVGIDVVDASIIIIENAE 569
           +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 417 ILVSTTVIEVGVNVPNATVMIVENAE 442


>gi|306992217|gb|ADN19225.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 442

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 168/446 (37%), Positives = 264/446 (59%), Gaps = 8/446 (1%)

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVL 185
           GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL   +  +
Sbjct: 2   GKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEI 61

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+AL L+++
Sbjct: 62  EEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMALFLVKR 118

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++QGDVGSG
Sbjct: 119 SVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQGDVGSG 176

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  ++++
Sbjct: 177 KTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKK 236

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LTQK   P VL+
Sbjct: 237 EVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTQKGENPDVLV 296

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +G++ 
Sbjct: 297 MTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQV 356

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F NG   
Sbjct: 357 YVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVNGKID 416

Query: 544 LLIATTVIEVGIDVVDASIIIIENAE 569
           +L++TTVIEVG++V +A+++I+ENAE
Sbjct: 417 ILVSTTVIEVGVNVPNATVMIVENAE 442


>gi|126653275|ref|ZP_01725386.1| transcription-repair coupling factor [Bacillus sp. B14905]
 gi|126589949|gb|EAZ84078.1| transcription-repair coupling factor [Bacillus sp. B14905]
          Length = 1169

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 140/463 (30%), Positives = 241/463 (52%), Gaps = 19/463 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +  +  + +A  +  L  +++ +   G     +    +       +  T+ Q 
Sbjct: 569  EWKKAKAKVSSAVQDIADDLIKLYAKREAE--KGYAFTPDNDDQRNFEAMFAYEETEDQL 626

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I ++ +DM ++  M R++ GDVG GKT VA+ A   A++ G Q   + P  ILAQQHY
Sbjct: 627  RSIVEVKRDMERERPMDRLVCGDVGYGKTEVAIRAAFKAIQDGKQVAFLVPTTILAQQHY 686

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I V +++    +  +   L+ +  GQ  I+IGTH +    + +  L L+
Sbjct: 687  ETIRERFQDFAINVGLLSRFRSKKEQTATLKGLKEGQVDIVIGTHRILSKDLLFQDLGLL 746

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  D+S I   PA R P+
Sbjct: 747  IVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSMVGVRDLSVIETPPANRFPV 806

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  +    V E ++  ++ G + +++  ++E     +    VE    L     + I
Sbjct: 807  QTYVMEHSG-ALVREAIEREMARGGQVFYLYNRVE-----DMARKVEEIQVLVPE--ARI 858

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+MS+ + ESV+ SF  G   +L+ TT+IE G+D+ + + +I+ +A+  GLAQL+Q
Sbjct: 859  GHAHGKMSESELESVILSFLEGDYDVLVTTTIIETGVDIPNVNTLIVHDADRMGLAQLYQ 918

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L+  +  RL  +K       GF IA  DL  R  G +
Sbjct: 919  LRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 978

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD--PDLT 674
            LG +Q G    +     L+  +L+ A ++ +  + ++  P++ 
Sbjct: 979  LGAQQHGFIDSVGFD--LYSQMLQEAIEERQTGVKKEEKPEIE 1019


>gi|55820109|ref|YP_138551.1| transcription repair coupling factor [Streptococcus thermophilus
           LMG 18311]
 gi|55736094|gb|AAV59736.1| transcription repair coupling factor [Streptococcus thermophilus
           LMG 18311]
          Length = 1168

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 150/452 (33%), Positives = 235/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +    +       ++ 
Sbjct: 557 KLNDGRFQKTKQKVSKQVEDIADNLLKLYA--ERSQLKGFAFSPDDDNQRDFEDEFSYAE 614

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV  G Q  I+ P  +L
Sbjct: 615 TVDQLRSIKEIKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVL 674

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A QHY   K+  +N  + V+ ++    +  + + ++ +A G+  IIIGTH L    +++ 
Sbjct: 675 AHQHYMNFKERFENHAVEVDELSRFRSKKEQNETIKNLAKGRIDIIIGTHRLLSKDVKFS 734

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 735 DLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSIIETAPT 794

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + ++I  ++E           ++ + LHE 
Sbjct: 795 NRYPVQTYVMETN-PGLIREAILREMDRGGQIFYIYNRVETID--------QKVSELHEL 845

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + I  +HG+MS++  E+ +  F NG   +L+ATT+IE GID+ + + ++IENA+H G
Sbjct: 846 VPEARIGFVHGQMSEVMLENTLLYFLNGDYDILVATTIIETGIDIPNVNTLLIENADHMG 905

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+YHP   L++ S  RL  +K       GF IA  DL  
Sbjct: 906 LSTLYQLRGRVGRSNRIAYAYLMYHPDKVLTEVSEKRLDAIKGFTELGSGFKIAMRDLSI 965

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 966 RGAGNILGASQSGFID--SVGFEMYSQLLEEA 995


>gi|221067482|ref|ZP_03543587.1| transcription-repair coupling factor [Comamonas testosteroni KF-1]
 gi|220712505|gb|EED67873.1| transcription-repair coupling factor [Comamonas testosteroni KF-1]
          Length = 1163

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 153/522 (29%), Positives = 242/522 (46%), Gaps = 29/522 (5%)

Query: 180  SRLPVLPEWIEKDL---------LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLA 229
               P L E++  +          + +    S     +    P  K    +W    R+   
Sbjct: 510  DGTPALQEFLHLEYAADAVLYVPVSQLHLISRYTGVSPDDAPLHKLGGTQWEKAKRKAAE 569

Query: 230  YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
                 A ++  +  R+  ++             ++ + +  F  T  Q +AI  ++QDM 
Sbjct: 570  QVRDSAAELLNIYARRAARQG--HAFRFPTADYEQFVADFGFEETADQRAAIHAVVQDMI 627

Query: 290  QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
                M R++ GDVG GKT VAL A   A   G Q   +AP  +LA+QHY+ +        
Sbjct: 628  SPQPMDRLVCGDVGFGKTEVALRAAFVAAMGGKQVAFLAPTTLLAEQHYQTLVDRFSKWP 687

Query: 350  IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
            I V  ++          A++ I+ G   I++GTH L  +S Q+  L L+I+DE+HRFGV+
Sbjct: 688  IKVAEVSRFRSGKEITAAIKGISDGTVDIVVGTHKLLSESTQFKNLGLLIIDEEHRFGVR 747

Query: 410  QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             +  +        VL +TATPIPRT+ +   G  D+S I   P  R  IKT +       
Sbjct: 748  HKEAMKAMRAEVDVLTLTATPIPRTMGMALEGLRDLSVIATAPQRRLAIKTFVRNEG-TG 806

Query: 470  EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             + E +   L  G + Y++  ++E  +     +  ++   +     + IA+ HG+M + +
Sbjct: 807  VIREAVLRELKRGGQIYFLHNEVETIE-----NRKQKLEEILPE--ARIAVAHGQMPERE 859

Query: 530  KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
             E VM  F      +L+ +T+IE GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR    
Sbjct: 860  LERVMRDFVAQRYNILLCSTIIETGIDVPSANTILISRADKFGLAQLHQLRGRVGRSHHQ 919

Query: 590  SSCILLYH--PPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
            +   L+      L+K +  RL     ++    GF +A  DL+ R  GE+LG  QSG    
Sbjct: 920  AYAYLMVPDLDGLTKQAQQRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGENQSGNM-- 977

Query: 645  LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            L    +L++ +L  A +  K    ++PDL S    S  I L+
Sbjct: 978  LEVGFQLYNEMLSEAVRSLKA--GKEPDLLSPLSASTDINLH 1017


>gi|332524809|ref|ZP_08401002.1| transcription-repair coupling factor [Rubrivivax benzoatilyticus JA2]
 gi|332108111|gb|EGJ09335.1| transcription-repair coupling factor [Rubrivivax benzoatilyticus JA2]
          Length = 1145

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 150/499 (30%), Positives = 234/499 (46%), Gaps = 20/499 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P  K    +W    R+        A ++  L  R+  ++   
Sbjct: 521  VAQLHLISRYTGVSADEAPLHKLGSGQWDKARRKAAEQVRDTAAELLNLYARRAAREG-- 578

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
                      +    +  F  T  Q +AI  ++QD+     M R++ GDVG GKT VAL 
Sbjct: 579  YAHRYSPADYEAFAASFGFEETPDQRAAIHAVIQDLVSPRPMDRLVCGDVGFGKTEVALR 638

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A   +V  G Q  ++AP  +LA+QHY+ +        + +  ++        + ALE +A
Sbjct: 639  AAFVSVIGGKQVALLAPTTLLAEQHYQTLVDRFGKWPVKIAELSRFRSAKEVKAALEGLA 698

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   I++GTH L    ++Y +L L+I+DE+HRFGV+ +  +        VL +TATPIP
Sbjct: 699  DGTVDIVVGTHKLLSQDVRYKRLGLLIIDEEHRFGVRHKEAIKAMRAEVDVLTLTATPIP 758

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  IKT +   N    + E +   L  G + Y++   +
Sbjct: 759  RTLGMALEGLRDLSVIATAPQRRLAIKTFVRSENN-STIREAVLRELKRGGQVYFLHNDV 817

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E  +    +        L     + I + HG+M + + E VM  F      +L+ +T+IE
Sbjct: 818  ESIQARRQK-----LEELLPE--ARIGVAHGQMPERELEHVMRDFVAQRHNILLCSTIIE 870

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR    +   LL      L+K +  RL  
Sbjct: 871  TGIDVPTANTIVISRADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDVEALTKQAAQRLEA 930

Query: 611  ---LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
               ++    GF +A  DL+ R  GE+LG  QSG    +    +L++ +L  A +  K   
Sbjct: 931  IQQMEELGSGFYLAMHDLEIRGAGEVLGENQSGNM--MEVGFQLYNDMLSEAVRSLKA-- 986

Query: 668  TQDPDLTSVRGQSIRILLY 686
             ++PDL S    +  I L+
Sbjct: 987  GKEPDLLSPLSATTEINLH 1005


>gi|229074115|ref|ZP_04207162.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18]
 gi|229094775|ref|ZP_04225781.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29]
 gi|229113728|ref|ZP_04243164.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3]
 gi|228669725|gb|EEL25131.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3]
 gi|228688643|gb|EEL42515.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29]
 gi|228709009|gb|EEL61135.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18]
          Length = 1176

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 138/448 (30%), Positives = 231/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T  Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETDDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + L+ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETLKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|160898289|ref|YP_001563871.1| transcription-repair coupling factor [Delftia acidovorans SPH-1]
 gi|160363873|gb|ABX35486.1| transcription-repair coupling factor [Delftia acidovorans SPH-1]
          Length = 1164

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 149/497 (29%), Positives = 236/497 (47%), Gaps = 20/497 (4%)

Query: 196  KKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            +    S     +    P  K    +W    R+        A ++  +  R+  ++     
Sbjct: 535  QLQLISRYTGVSPEDAPLHKLGGTQWEKAKRKAAEQVRDSAAELLNIYARRAARQG--HA 592

Query: 255  INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
                 +  ++   +  F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A 
Sbjct: 593  FRYSPQDYEQFANDFGFEETADQRAAIHAVIQDMISPQPMDRLVCGDVGFGKTEVALRAA 652

Query: 315  AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
              A+  G Q   +AP  +LA+QHY+ +        I V  ++          A++ IA G
Sbjct: 653  FVAITGGKQVAFLAPTTLLAEQHYQTLVDRFSKWPIKVAEVSRFRSGKEITAAVKGIADG 712

Query: 375  QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
               I++GTH L  +S Q+  L L+I+DE+HRFGV+ +  +        VL +TATPIPRT
Sbjct: 713  SVDIVVGTHKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRT 772

Query: 435  LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + +   G  D+S I   P  R  IKT +        + E +   L  G + Y++  ++E 
Sbjct: 773  MGMALEGLRDLSVIATAPQRRLAIKTFVRNEG-TGVIREAVLRELKRGGQCYFLHNEVET 831

Query: 495  KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             +     +  ++   +     + IA+ HG+M + + E VM  F      +L+ +T+IE G
Sbjct: 832  IE-----NRKQKLEEILPE--ARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETG 884

Query: 555  IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSV-- 610
            IDV  ++ I+I  A+ FGLAQLHQLRGRVGR    +   L+      L+K +  RL    
Sbjct: 885  IDVPSSNTILISRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDLDSLTKQAQQRLEAIQ 944

Query: 611  -LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
             ++    GF +A  DL+ R  GE+LG  QSG    +    +L++ +L  A +  K    +
Sbjct: 945  QMEELGSGFYLAMHDLEIRGAGEVLGENQSGNM--MEVGFQLYNEMLSEAVRSLKA--GK 1000

Query: 670  DPDLTSVRGQSIRILLY 686
            +PDL S    S  I L+
Sbjct: 1001 EPDLLSPLSASTDINLH 1017


>gi|264678103|ref|YP_003278010.1| transcription-repair coupling factor [Comamonas testosteroni CNB-2]
 gi|262208616|gb|ACY32714.1| transcription-repair coupling factor [Comamonas testosteroni CNB-2]
          Length = 1163

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 152/522 (29%), Positives = 242/522 (46%), Gaps = 29/522 (5%)

Query: 180  SRLPVLPEWIEKDL---------LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLA 229
               P L E++  +          + +    S     +    P  K    +W    R+   
Sbjct: 510  DGTPALQEFLHLEYAADAVLYVPVSQLHLISRYTGVSPDDAPLHKLGGTQWEKAKRKAAE 569

Query: 230  YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
                 A ++  +  R+  ++             ++ + +  F  T  Q +AI  ++QDM 
Sbjct: 570  QVRDSAAELLNIYARRAARQG--HAFRFPTADYEQFVADFGFEETADQRAAIHAVVQDMI 627

Query: 290  QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
                M R++ GDVG GKT VAL A   A   G Q   +AP  +LA+QHY+ +        
Sbjct: 628  SPQPMDRLVCGDVGFGKTEVALRAAFVAAMGGKQVAFLAPTTLLAEQHYQTLVDRFSKWP 687

Query: 350  IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
            I V  ++          A++ I+ G   I++GTH L  +S Q+  L L+I+DE+HRFGV+
Sbjct: 688  IKVAEVSRFRSGKEITAAIKGISDGTVDIVVGTHKLLSESTQFKNLGLLIIDEEHRFGVR 747

Query: 410  QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             +  +        VL +TATPIPRT+ +   G  D+S I   P  R  IKT +       
Sbjct: 748  HKEAMKAMRAEVDVLTLTATPIPRTMGMALEGLRDLSVIATAPQRRLAIKTFVRNEG-TG 806

Query: 470  EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             + E +   L  G + Y++  ++E  +     +  ++   +     + IA+ HG+M + +
Sbjct: 807  VIREAVLRELKRGGQIYFLHNEVETIE-----NRKQKLEEILPE--ARIAVAHGQMPERE 859

Query: 530  KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
             E VM  F      +L+ +T+IE GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR    
Sbjct: 860  LERVMRDFVAQRYNILLCSTIIETGIDVPSANTILISRADKFGLAQLHQLRGRVGRSHHQ 919

Query: 590  SSCILLYH--PPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
            +   L+      L+K +  RL     ++    GF +A  DL+ R  GE+LG  QSG    
Sbjct: 920  AYAYLMVPDLDGLTKQAQQRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGENQSGNM-- 977

Query: 645  LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            +    +L++ +L  A +  K    ++PDL S    S  I L+
Sbjct: 978  MEVGFQLYNEMLSEAVRSLKA--GKEPDLLSPLSASTDINLH 1017


>gi|329577423|gb|EGG58873.1| TRCF domain protein [Enterococcus faecalis TX1467]
          Length = 637

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 146/455 (32%), Positives = 240/455 (52%), Gaps = 19/455 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   R+  +  E +A  + LL   ++ +   G     +    ++     P+S T  Q 
Sbjct: 28  EWTKTKRKVASKIEDIADDLILLYATRESE--KGYAFPPDDAYQKEFEEAFPYSETDDQL 85

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I  DM +   M R+L GDVG GKT VAL A   AV    Q   + P  ILAQQHY
Sbjct: 86  RSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHY 145

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I++  +   + + +++    +  + + +E+I HGQ  I+IGTH L    I +  L L+
Sbjct: 146 ETIQERFEGFPVEIGLLSRFRTKKQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLL 205

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 206 IIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 265

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  N    + E ++  ++   + +++  +++  +       VE   +L     + I
Sbjct: 266 QTYVME-NNPGAIREAIEREMARDGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 317

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HG+M+++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 318 AYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 377

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 378 LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 437

Query: 634 LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHI 666
           LG +Q G    +     ++  +L   +ARK  K+I
Sbjct: 438 LGAQQHGFIDSVGFD--MYSQMLSEAVARKQGKNI 470


>gi|304413564|ref|ZP_07395037.1| Transcription-repair coupling factor (superfamily II helicase)
            [Candidatus Regiella insecticola LSR1]
 gi|304284407|gb|EFL92800.1| Transcription-repair coupling factor (superfamily II helicase)
            [Candidatus Regiella insecticola LSR1]
          Length = 1165

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 147/471 (31%), Positives = 237/471 (50%), Gaps = 18/471 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++       +A ++  L    Q   + G     + +  +   ++ PF  T  QE 
Sbjct: 571  WQRARQKAAEKIRDVAAEL--LDTYSQRAAKPGFQFQQDHQQYRLFCQDFPFDTTPDQEK 628

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I  +L DM Q   M R++ GDVG GKT VA+ A   A+    Q  ++ P  +LAQQH++
Sbjct: 629  TINAVLNDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAIVNKKQTAVLVPTTLLAQQHFD 688

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       + +E+++       ++   ++   G+  I+IGTH L Q  + +  L L+I
Sbjct: 689  NFRDRFATWPVKIEMLSRFRRPKEQQAIFQQAYEGKIDILIGTHKLLQPHLHWKDLGLLI 748

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+HRFGV+ + ++    T   +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 749  VDEEHRFGVRHKEQIKAMRTDVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 808

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   + +  + E +   +  G + +++   +E+ +    +        L     + IA
Sbjct: 809  TFVREYDEL-LLREAILREILRGGQVFYLYNDVEKIEGVATK-----LAELVPE--AHIA 860

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + D E VM+ F +    +L+ TT+IE GIDV +A+ IIIE A+  GLAQLHQL
Sbjct: 861  IGHGQMRERDLERVMNDFHHQRFNILVCTTIIETGIDVPNANTIIIERADRLGLAQLHQL 920

Query: 580  RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636
            RGRVGR    +   LL  P +  ++  RL  + + E+   GF +A  DL+ R  GE+LG 
Sbjct: 921  RGRVGRSHHQAYAYLLT-PNIKSDAKKRLEAIASLEELGAGFALATHDLEIRGAGELLGE 979

Query: 637  KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
             QSG    +     L+  +LE A    K    ++P L ++  Q   I + +
Sbjct: 980  DQSGQMTTIGFS--LYMEMLENAVNALKE--GREPSLENLTRQQTEIEMRM 1026


>gi|299533693|ref|ZP_07047067.1| transcription-repair coupling factor [Comamonas testosteroni S44]
 gi|298718415|gb|EFI59398.1| transcription-repair coupling factor [Comamonas testosteroni S44]
          Length = 1163

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 152/522 (29%), Positives = 242/522 (46%), Gaps = 29/522 (5%)

Query: 180  SRLPVLPEWIEKDL---------LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLA 229
               P L E++  +          + +    S     +    P  K    +W    R+   
Sbjct: 510  DGTPALQEFLHLEYAADAVLYVPVSQLHLISRYTGVSPDDAPLHKLGGTQWEKAKRKAAE 569

Query: 230  YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
                 A ++  +  R+  ++             ++ + +  F  T  Q +AI  ++QDM 
Sbjct: 570  QVRDSAAELLNIYARRAARQG--HAFRFPTADYEQFVADFGFEETADQRAAIHAVVQDMI 627

Query: 290  QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
                M R++ GDVG GKT VAL A   A   G Q   +AP  +LA+QHY+ +        
Sbjct: 628  SPQPMDRLVCGDVGFGKTEVALRAAFVAAMGGKQVAFLAPTTLLAEQHYQTLVDRFSKWP 687

Query: 350  IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
            I V  ++          A++ I+ G   I++GTH L  +S Q+  L L+I+DE+HRFGV+
Sbjct: 688  IKVAEVSRFRSGKEITAAIKGISDGTVDIVVGTHKLLSESTQFKNLGLLIIDEEHRFGVR 747

Query: 410  QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             +  +        VL +TATPIPRT+ +   G  D+S I   P  R  IKT +       
Sbjct: 748  HKEAMKAMRAEVDVLTLTATPIPRTMGMALEGLRDLSVIATAPQRRLAIKTFVRNEG-TG 806

Query: 470  EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             + E +   L  G + Y++  ++E  +     +  ++   +     + IA+ HG+M + +
Sbjct: 807  VIREAVLRELKRGGQIYFLHNEVETIE-----NRKQKLEEILPE--ARIAVAHGQMPERE 859

Query: 530  KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
             E VM  F      +L+ +T+IE GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR    
Sbjct: 860  LERVMRDFVAQRYNILLCSTIIETGIDVPSANTILISRADKFGLAQLHQLRGRVGRSHHQ 919

Query: 590  SSCILLYH--PPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
            +   L+      L+K +  RL     ++    GF +A  DL+ R  GE+LG  QSG    
Sbjct: 920  AYAYLMVPDLDGLTKQAQQRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGENQSGNM-- 977

Query: 645  LIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            +    +L++ +L  A +  K    ++PDL S    S  I L+
Sbjct: 978  MEVGFQLYNEMLSEAVRSLKA--GKEPDLLSPLSASTDINLH 1017


>gi|319940955|ref|ZP_08015292.1| transcription-repair coupling factor [Sutterella wadsworthensis
            3_1_45B]
 gi|319805528|gb|EFW02323.1| transcription-repair coupling factor [Sutterella wadsworthensis
            3_1_45B]
          Length = 1194

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 153/473 (32%), Positives = 228/473 (48%), Gaps = 19/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L      +   GI   ++    Q       F  T  Q 
Sbjct: 557  DWEKAKRKAAQEVRDTAAELLNLYA--IRRTREGIRFKIDPADYQAFREGFAFDETPDQS 614

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   A  +G Q  ++ P  +LA+QH 
Sbjct: 615  TAINAVVDDMTSGKSMDRLVCGDVGFGKTEVALRAAFIAAMSGRQVAVLCPTTLLAEQHA 674

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +   +   + V  ++         K L  +A G   I+IGTH L  D  Q+  L LV
Sbjct: 675  ATFRDRFRAWPVTVAELSRFRTGKESAKVLAGLADGTVDIVIGTHKLLSDKAQFKNLGLV 734

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+HRFGV+Q+  L +      VL +TATPIPRTL ++  G  D S I   P  R  +
Sbjct: 735  VIDEEHRFGVRQKEVLRKIRAEVDVLTLTATPIPRTLSMSLEGIRDFSVIATAPERRLAV 794

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +    +   + E +   L  G + Y++  ++   +     +   R  +L     + I
Sbjct: 795  KTFV-TSEQDGTIREAVLRELKRGGQVYYLHNEVNTIE-----NARARLETLVPE--ARI 846

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F      +L+ +T+IE GIDV  A+ IIIE A+ FGLAQLHQ
Sbjct: 847  AVAHGQMRERELEHVMRDFYQQRFNVLLCSTIIETGIDVPSANTIIIERADKFGLAQLHQ 906

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL  P    +K++  RL  ++  ED   GF +A  DL+ R  GE+
Sbjct: 907  LRGRVGRSHHQAYAYLLTPPDGAFTKDAQKRLDAIQALEDLGSGFYLAMHDLEIRGAGEV 966

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            LG  QSG  +      +L++ +L  A K  K    + P        S  I L+
Sbjct: 967  LGEHQSG--EIAEVGYDLYNRMLMQAVKALKR--GETPQAGDPLQLSTDINLH 1015


>gi|327403557|ref|YP_004344395.1| transcription-repair coupling factor [Fluviicola taffensis DSM
           16823]
 gi|327319065|gb|AEA43557.1| transcription-repair coupling factor [Fluviicola taffensis DSM
           16823]
          Length = 1113

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 141/456 (30%), Positives = 227/456 (49%), Gaps = 17/456 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++     + LA  +  L  ++  K + G   + +  +  ++  +  +  T  Q  
Sbjct: 506 WATLKQKTKKRIKELAFDLIQLYAKR--KSQPGFAFSPDTYLQNELEASFMYEDTPDQLK 563

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A + + +DM ++  M R++ GDVG GKT +A+ A   AV    Q  ++ P  IL+ QH  
Sbjct: 564 ATQAVKEDMEKETPMDRLVCGDVGFGKTEIAMRAAFKAVADSKQVAVLVPTTILSHQHAR 623

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  +N    V+ I            L+++  G+  I++GTH +  D +++  L L+I
Sbjct: 624 SFKERFKNFPANVDYINRFKSAKEITATLKKVESGEVDILVGTHKIVSDKVKFKDLGLII 683

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL    T    L +TATPIPRTL  + +G  D+S I   P  R+P+ 
Sbjct: 684 IDEEQKFGVAVKDKLKTLKTTVDTLTLTATPIPRTLQFSLMGARDLSIINTPPPNRQPVL 743

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +I  N  + + + +   +S G + Y++  ++   KE          + L       +A
Sbjct: 744 TEVITFNE-EAIRDAISYEVSRGGQVYFVNNRLANIKEIAG-----MISRLCPGV--RVA 795

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E VM  F  G   +LIATT+IE GID+ +A+ III ++  FGL+ LHQL
Sbjct: 796 IGHGQMDGKQLEKVMMDFIQGEYDVLIATTIIESGIDISNANTIIINDSHMFGLSDLHQL 855

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  +   C L+  P   L+  +  RL  L    D   GF IA +DL  R  G +L
Sbjct: 856 RGRVGRSNKKGFCYLISQPISLLTSEARKRLEALVQFSDLGSGFNIAMKDLDIRGAGNLL 915

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           G +QSG    +    E++  +L  A  + K    +D
Sbjct: 916 GGEQSGFISEI--GFEMYQKILNEAMDELKEEEFKD 949


>gi|94971575|ref|YP_593623.1| transcription-repair coupling factor [Candidatus Koribacter
            versatilis Ellin345]
 gi|94553625|gb|ABF43549.1| transcription-repair coupling factor [Candidatus Koribacter
            versatilis Ellin345]
          Length = 1182

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 154/488 (31%), Positives = 249/488 (51%), Gaps = 23/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +A ++  L      K   G   +  G+  ++      F+ T+ QE
Sbjct: 582  QWAKTKARVKKAMKDMADELLKLYA--ARKTAKGHAFSATGQFEREFDDAFEFNETEDQE 639

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+D+ QDM     M R+L GDVG GKT V++ A   AV    Q  ++AP  +LA QH+
Sbjct: 640  NAIRDVRQDMESDTPMDRLLCGDVGYGKTEVSMRAAFKAVSDNKQVAVLAPTTVLAFQHF 699

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  K+      + VE+I+       +++ +ER+ +GQ  I+IGTH +    I +  L LV
Sbjct: 700  ETFKRRFSAFPVKVEMISRFRTAKQQKEIVERVNNGQVDILIGTHRVLSKDIHFPDLGLV 759

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + +L Q      VL M+ATPIPRTL ++ LG  D+S I   P  R  I
Sbjct: 760  VIDEEQRFGVRHKERLKQLRKEVDVLTMSATPIPRTLHMSLLGLRDMSVIETPPKDRMAI 819

Query: 459  KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            +TV+   +   I   IE+    L  G + Y++  ++E   E     + ++ + L     +
Sbjct: 820  QTVVAKWDEKLIKSAIEQ---ELDRGGQIYFVHNRVESIYE-----ISDKIHELVPK--A 869

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             I + HG+M +   E +M  F      +L+ATT+IE G+D+   + +I+  A+  GL++L
Sbjct: 870  KILVGHGQMGEGQLEDIMLKFMRHDADILVATTIIENGLDIPLCNTMIVNRADRHGLSEL 929

Query: 577  HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            +QLRGRVGR    +   LL  P   L++ +  RL+ LK   D   GF IA  DL+ R  G
Sbjct: 930  YQLRGRVGRSNRRAYAYLLVPPDRELTELARRRLAALKEFSDLGAGFKIAALDLELRGAG 989

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLE-IARKDAKHILTQDPDLTSVRGQSIRI-LLYLYQ 689
             +LG +QSG  +      EL+ ++LE   R+    +  +  +     G +IRI   Y+ +
Sbjct: 990  NLLGGEQSGQIE--AVGFELYTTMLERTVREMKGEVQEEQAETQLNLGLNIRIPPEYIKE 1047

Query: 690  YNEAFQFI 697
             N+  +  
Sbjct: 1048 ENQRLRMY 1055


>gi|228989261|ref|ZP_04149254.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM
            12442]
 gi|228770471|gb|EEM19042.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM
            12442]
          Length = 1176

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 233/448 (52%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PGLIREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPE--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF +G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLDGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|217967893|ref|YP_002353399.1| transcription-repair coupling factor [Dictyoglomus turgidum DSM
           6724]
 gi|217336992|gb|ACK42785.1| transcription-repair coupling factor [Dictyoglomus turgidum DSM
           6724]
          Length = 1059

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 156/455 (34%), Positives = 244/455 (53%), Gaps = 17/455 (3%)

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            +  +W    R+     + +A ++  L +  Q +   G   + +  + +++  + P+  T
Sbjct: 484 LESRQWEETKRKVKESAKEIAEEL--LKIYAQREITKGFAFSPDSPLQEELEASFPYIET 541

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + Q  A+++I +DM     M R+L GDVG GKT +AL A   AV  G Q  I+ P  ILA
Sbjct: 542 EDQIKALREIKKDMESTKPMERVLIGDVGFGKTELALRASFKAVLDGKQVAILVPTTILA 601

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            QH++  K+  +   + VEI++   P++ +++ +E+I  G+  IIIGTH + Q  +++  
Sbjct: 602 YQHWKVFKERLEVFPVNVEILSRLKPKSEQKRIIEKIRKGEIDIIIGTHRILQKDVEFKD 661

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+IVDE+HRFGV Q+    +K     +L ++ATPIPRTL +   G    S +   P  
Sbjct: 662 LGLIIVDEEHRFGVLQKEAFKKKYPHVDILYLSATPIPRTLSMVLSGIRQFSVLETPPEN 721

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R PI+T ++  N  + + E ++  L  G + Y++C  IE  +      + E  + L    
Sbjct: 722 RLPIQTFVVEYN-PEIIQEGIRRELERGGQVYYVCNDIERLE-----KIREELSKLVPEA 775

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           T +IA  HG+M D     VM +F +G   +L+ATT+IE GIDV +A+ + +ENAEH GLA
Sbjct: 776 TYAIA--HGKMDDEKLTEVMSNFYDGKIDVLVATTIIESGIDVPNANTLFVENAEHMGLA 833

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
           QL+QLRGR+GR  + +    L+ P   LS  S  RL  LK       G  +A  DL+ R 
Sbjct: 834 QLYQLRGRIGRSYKQAYAYFLHAPLKKLSLESIKRLEALKEFSSLGSGLRLALRDLEIRG 893

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            G+ILG +Q G          L+  LLE A  + K
Sbjct: 894 AGKILGKEQHGHIN--SVGFYLYLQLLEEAINELK 926


>gi|17232707|ref|NP_489255.1| transcriptional-repair coupling factor [Nostoc sp. PCC 7120]
 gi|17134354|dbj|BAB76914.1| transcriptional-repair coupling factor [Nostoc sp. PCC 7120]
          Length = 1185

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 144/449 (32%), Positives = 235/449 (52%), Gaps = 18/449 (4%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
             +  R R A  +L    + L   R Q +         +    +++  + P+  T  Q  A
Sbjct: 587  NTKNRVRKAIKKLAVDLLKLYAARSQQQG---FAYPQDMPWQEEMEDSFPYQATTDQLKA 643

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            ++D+ +DM     M R++ GDVG GKT VA+ A+  AV +G Q  ++AP  IL QQHY  
Sbjct: 644  VQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTSGKQVALLAPTTILTQQHYHT 703

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            +K+      + V ++        RR   +R+A G+  I++GTH L   S+ +  L L+++
Sbjct: 704  LKERFSPYPVNVGLLNRFRTAEERRNIQKRLATGELDIVVGTHQLLGKSVSFKDLGLLVI 763

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+ RFGV Q+ K+    T   VL ++ATPIPRTL ++  G  ++S IT  P  R+PIKT
Sbjct: 764  DEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSLITTPPPTRRPIKT 823

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             + P N  + V   ++  L  G + +++ P+++  +E          N       +  AI
Sbjct: 824  HLSPRN-PESVRSAIRQELDRGGQVFYVVPRVDGIEEI-------TANLREMVPGARFAI 875

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+M + + ES M +F NG   +L+ TT+IE G+D+   + I+IE+A  FGL+QL+QLR
Sbjct: 876  AHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILIEDAHRFGLSQLYQLR 935

Query: 581  GRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
            GRVGR    +   L Y     LS  +  RL  ++       G+ +A  D++ R  G +LG
Sbjct: 936  GRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLG 995

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             +QSG  + +     L+  +LE + ++ +
Sbjct: 996  AEQSGQMEAIGFD--LYMEMLEESIREIR 1022


>gi|295090936|emb|CBK77043.1| transcription-repair coupling factor [Clostridium cf. saccharolyticum
            K10]
          Length = 1185

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 230/447 (51%), Gaps = 19/447 (4%)

Query: 219  EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EW     R R A  E+    + L   R++ +         +    ++     P+  T+ Q
Sbjct: 578  EWNKTKTRVRGAVKEIAKDLVKLYAARQEQEG---FQYGPDTVWQREFEEMFPYEETEDQ 634

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              AI  + +DM  +  M R++ GDVG GKT +AL A   A++ G Q V + P  ILAQQH
Sbjct: 635  LEAIDAVKRDMESRKIMDRLICGDVGYGKTEIALRAAFKAIQEGKQVVYLVPTTILAQQH 694

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y    +  ++  + V++++     A +++ LE +  G   ++IGTH +    +++  L L
Sbjct: 695  YNTFVQRMKDFPVRVDMLSRFRTPAEQKRTLEDLKKGFVDVLIGTHRVLSKDVEFKSLGL 754

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +I+DE+ RFGV  + K+ +      V+ +TATPIPRTL ++ +G  D+S + E P  R P
Sbjct: 755  LIIDEEQRFGVAHKEKIKKLKENVDVITLTATPIPRTLHMSLIGIRDMSVLEEPPVDRLP 814

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            I+T ++  N  + V E +   ++ G + Y++  ++   +E           SL     + 
Sbjct: 815  IQTYVMEYND-EMVREAINREVARGGQVYYVYNRVNNIEEIANH-----VASLVPD--AQ 866

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +   HG+M + + E +M  F NG   +L++TT+IE G+++ +A+ III +A+  GL+QL+
Sbjct: 867  VTFAHGQMREHELERIMLDFVNGDIDVLVSTTIIETGLNIPNANTIIIHDADRLGLSQLY 926

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            Q+RGRVGR    S   L+Y     L + +  RL  ++       G  IA  DL+ R  G 
Sbjct: 927  QIRGRVGRSSRTSYAFLMYRRDKLLREEAEKRLQAIREFTELGSGIKIAMRDLEIRGAGN 986

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ILG +Q G  + +     L+  LL  A
Sbjct: 987  ILGAEQHGHMEAVGYD--LYCKLLNEA 1011


>gi|228995444|ref|ZP_04155114.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17]
 gi|228764305|gb|EEM13182.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17]
          Length = 1183

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 233/448 (52%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 579  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 636

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 637  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 696

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 697  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 756

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 757  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 816

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 817  QTYVVEYN-PGLIREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPE--ARV 868

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF +G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 869  TYAHGKMNESELESVMLSFLDGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 928

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 929  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 988

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 989  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1014


>gi|306992431|gb|ADN19332.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992433|gb|ADN19333.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992435|gb|ADN19334.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
 gi|306992437|gb|ADN19335.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 441

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 163/446 (36%), Positives = 260/446 (58%), Gaps = 8/446 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASI 562
           F NG   +L++TTVIEVG++V +A++
Sbjct: 416 FVNGKIDILVSTTVIEVGVNVPNATV 441


>gi|306992181|gb|ADN19207.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 444

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 167/447 (37%), Positives = 264/447 (59%), Gaps = 8/447 (1%)

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVL 185
           GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL   +  +
Sbjct: 2   GKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEI 61

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+AL L+++
Sbjct: 62  EEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMALFLVKR 118

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++QGDVGSG
Sbjct: 119 SVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQGDVGSG 176

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  ++++
Sbjct: 177 KTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKK 236

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K   P VL+
Sbjct: 237 EVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENPDVLV 296

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +G++ 
Sbjct: 297 MTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQV 356

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F NG   
Sbjct: 357 YVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVNGKID 416

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEH 570
           +L++TTVIEVG++V +A+++I+ENAE 
Sbjct: 417 ILVSTTVIEVGVNVPNATVMIVENAEM 443


>gi|254724194|ref|ZP_05185979.1| transcription-repair coupling factor [Bacillus anthracis str. A1055]
          Length = 1176

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 231/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  ISDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQVYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|257871350|ref|ZP_05651003.1| transcription-repair coupling factor [Enterococcus gallinarum EG2]
 gi|257805514|gb|EEV34336.1| transcription-repair coupling factor [Enterococcus gallinarum EG2]
          Length = 1173

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 141/453 (31%), Positives = 238/453 (52%), Gaps = 19/453 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A  + LL  +++ +   G     +    ++     P+S T  Q 
Sbjct: 568  EWAKTKRKVSAKIEDIADDLILLYAKRESE--KGYAFQPDDGYQKEFEDAFPYSETDDQL 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 626  RSTAEIKRDMEKEKPMDRLLVGDVGFGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +    +   + V +++    +  + + +E++  GQ  I++GTH L    +++  L L+
Sbjct: 686  ETMLDRFEGFPVNVGLLSRFRTKKQQTETIEQVKKGQIDILVGTHRLLSKDVEFADLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746  VIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++ +N    V E +   ++ G + +++  +++  +       VE   +L     + I
Sbjct: 806  QTYVMEMN-PGAVREAILREMARGGQVFYLYNRVDTIE-----RKVEELQALVPD--ARI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 858  GYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEI--ARKDAK 664
            LG +Q G         +++  +L    ARK  K
Sbjct: 978  LGAQQHGFID--AVGFDMYSQMLSESVARKQGK 1008


>gi|261417548|ref|YP_003251230.1| transcription-repair coupling factor [Geobacillus sp. Y412MC61]
 gi|319765205|ref|YP_004130706.1| transcription-repair coupling factor [Geobacillus sp. Y412MC52]
 gi|261374005|gb|ACX76748.1| transcription-repair coupling factor [Geobacillus sp. Y412MC61]
 gi|317110071|gb|ADU92563.1| transcription-repair coupling factor [Geobacillus sp. Y412MC52]
          Length = 1177

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 134/435 (30%), Positives = 225/435 (51%), Gaps = 15/435 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            + +  + +   G   + + ++ ++     P+  T+ Q  +I++I +DM     M R+L G
Sbjct: 592  IKLYAEREASKGYAFSPDTEMQREFEAAFPYQETEDQLRSIEEIKRDMESDKPMDRLLCG 651

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   A+  G Q   + P  ILAQQHYE +++  Q   I V ++     
Sbjct: 652  DVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGFPINVGLLNRFRT 711

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            +  + + ++ +  G   ++IGTH L    +++  L L+I+DE+ RFGV  + K+ Q    
Sbjct: 712  KKQQAEIIKGLKDGTIDMVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVAHKEKIKQLKAN 771

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL +TATPIPRTL ++ +G  D+S I   P  R P++T ++     + V E ++  L+
Sbjct: 772  IDVLTLTATPIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEY-TPELVKEAIERELA 830

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
               + +++   IE+          E    L     + +  +HGRMS+ + ES + +F  G
Sbjct: 831  RDGQVFFLYNHIEDID-----LKAEEIAQLVPE--ARVTYVHGRMSETELESTILAFLEG 883

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
               +L+ TT+IE GID+ + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y    
Sbjct: 884  QYDVLVTTTIIETGIDIPNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDK 943

Query: 600  -LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             L++ +  RL  +K       GF IA  DL  R  G ILG +Q G    +     L+  +
Sbjct: 944  VLNEAAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNILGAEQHGFIDSVGFD--LYSQM 1001

Query: 656  LEIARKDAKHILTQD 670
            L+ A +  + I  +D
Sbjct: 1002 LKEAIEKRRGIKRED 1016


>gi|291087006|ref|ZP_06345122.2| transcription-repair coupling factor [Clostridium sp. M62/1]
 gi|291076614|gb|EFE13978.1| transcription-repair coupling factor [Clostridium sp. M62/1]
          Length = 1187

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 230/447 (51%), Gaps = 19/447 (4%)

Query: 219  EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EW     R R A  E+    + L   R++ +         +    ++     P+  T+ Q
Sbjct: 580  EWNKTKTRVRGAVKEIAKDLVKLYAARQEQEG---FQYGPDTVWQREFEEMFPYEETEDQ 636

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              AI  + +DM  +  M R++ GDVG GKT +AL A   A++ G Q V + P  ILAQQH
Sbjct: 637  LEAIDAVKRDMESRKIMDRLICGDVGYGKTEIALRAAFKAIQEGKQVVYLVPTTILAQQH 696

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y    +  ++  + V++++     A +++ LE +  G   ++IGTH +    +++  L L
Sbjct: 697  YNTFVQRMKDFPVRVDMLSRFRTPAEQKRTLEDLKKGFVDVLIGTHRVLSKDVEFKSLGL 756

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +I+DE+ RFGV  + K+ +      V+ +TATPIPRTL ++ +G  D+S + E P  R P
Sbjct: 757  LIIDEEQRFGVAHKEKIKKLKENVDVITLTATPIPRTLHMSLIGIRDMSVLEEPPVDRLP 816

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            I+T ++  N  + V E +   ++ G + Y++  ++   +E           SL     + 
Sbjct: 817  IQTYVMEYND-EMVREAINREVARGGQVYYVYNRVNNIEEIANH-----VASLVPD--AQ 868

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +   HG+M + + E +M  F NG   +L++TT+IE G+++ +A+ III +A+  GL+QL+
Sbjct: 869  VTFAHGQMREHELERIMLDFVNGDIDVLVSTTIIETGLNIPNANTIIIHDADRLGLSQLY 928

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            Q+RGRVGR    S   L+Y     L + +  RL  ++       G  IA  DL+ R  G 
Sbjct: 929  QIRGRVGRSSRTSYAFLMYRRDKLLREEAEKRLQAIREFTELGSGIKIAMRDLEIRGAGN 988

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ILG +Q G  + +     L+  LL  A
Sbjct: 989  ILGAEQHGHMEAVGYD--LYCKLLNEA 1013


>gi|306992461|gb|ADN19347.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 441

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 165/444 (37%), Positives = 262/444 (59%), Gaps = 8/444 (1%)

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVL 185
           GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL   +  +
Sbjct: 2   GKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEV 61

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+AL LM++
Sbjct: 62  EEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMALFLMKR 118

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++QGDVGSG
Sbjct: 119 SVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGDVGSG 176

Query: 306 KTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           KT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  ++++
Sbjct: 177 KTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKK 236

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           + LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K   P VL+
Sbjct: 237 EVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENPDVLV 296

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     + +G++ 
Sbjct: 297 MTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQV 356

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ F NG   
Sbjct: 357 YVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVNGKID 416

Query: 544 LLIATTVIEVGIDVVDASIIIIEN 567
           +L++TTVIEVG++V +A+++I+EN
Sbjct: 417 ILVSTTVIEVGVNVPNATVMIVEN 440


>gi|225016418|ref|ZP_03705610.1| hypothetical protein CLOSTMETH_00321 [Clostridium methylpentosum DSM
            5476]
 gi|224950803|gb|EEG32012.1| hypothetical protein CLOSTMETH_00321 [Clostridium methylpentosum DSM
            5476]
          Length = 1152

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 135/453 (29%), Positives = 222/453 (49%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW             +A ++  L    +  K  G   + + +  ++   +  +  T+ Q 
Sbjct: 564  EWNKTRSRVKKAVAEMADELIRLYA--ERAKTKGYAFSKDNEWQREFEDHFEYEETEDQL 621

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I++I  DM     M R+L GDVG GKT VAL A    V    Q  I+ P  ILA QHY
Sbjct: 622  RCIEEIKADMESDRPMERLLCGDVGFGKTEVALRAAFKCVLDSKQCAILCPTTILAWQHY 681

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +       N  + +E+++       +++ L+++  GQ  IIIGTH L Q  + +  L L 
Sbjct: 682  QTALARIGNFPVNIELLSRFRTPKEQKQVLQKLRTGQVDIIIGTHRLVQKDVAFSDLGLA 741

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + +  +      VL ++ATPIPRTL +   G  D+S I + P  R PI
Sbjct: 742  IIDEEQRFGVTHKERFKEMFRGVDVLTLSATPIPRTLNMAMSGIRDMSVIEQAPQDRHPI 801

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T +I  +    + + +K  L    + Y+I  ++E       +S   + + L     + I
Sbjct: 802  QTYVIEHD-YGVIADAIKRELRRDGQVYYIHNRVESI-----QSCAAQISKLVPD--ARI 853

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + +   +          +L+ TT+IE G+DV + + +IIE+A++ GL+QL+Q
Sbjct: 854  GIAHGKMGENELSRIWQQLMEHEIDILVCTTIIETGVDVSNCNTLIIEDADNMGLSQLYQ 913

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR +  +S    +     L++ +  RLS ++       GF IA  DL+ R  G I
Sbjct: 914  LRGRVGRSKRRASAYFTFRRGKVLTEIASKRLSAIREFTKFGSGFRIALRDLEIRGAGSI 973

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G  + +     ++  LL  A  + + +
Sbjct: 974  LGERQHGHMEAVGYD--MYLRLLSDAVSEKQGV 1004


>gi|229027900|ref|ZP_04184055.1| Transcription-repair-coupling factor [Bacillus cereus AH1271]
 gi|228733414|gb|EEL84241.1| Transcription-repair-coupling factor [Bacillus cereus AH1271]
          Length = 1176

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 232/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|118578938|ref|YP_900188.1| transcription-repair coupling factor [Pelobacter propionicus DSM
            2379]
 gi|118501648|gb|ABK98130.1| transcription-repair coupling factor [Pelobacter propionicus DSM
            2379]
          Length = 1177

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 146/460 (31%), Positives = 243/460 (52%), Gaps = 21/460 (4%)

Query: 222  SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            S  + R A +EL    + +   R+      G   +   ++ ++   +  +  T  Q SAI
Sbjct: 583  SKGKARKAIEELAGELLEIYAKRQ---ICEGFSFSPPDEMYREFEASFAWEETPDQLSAI 639

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
             D+L DM     M R++ GDVG GKT VAL     A   G Q  ++ P  ILAQQH+E  
Sbjct: 640  NDVLADMQHSRPMDRLVCGDVGYGKTEVALRGAFKAALDGKQVGVLVPTTILAQQHFETF 699

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
             +  +   + VE ++       ++  LER+  G+  I+IGTH L Q  + +  L L+I+D
Sbjct: 700  HERLKEYPVRVEALSRFRTPKEQKAILERLKKGEIDIVIGTHRLLQKDVAFKDLGLLIID 759

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+ RFGV+ + +L        V+ +TATPIPRTL ++ +G  D+S I   P  R  +KT+
Sbjct: 760  EEQRFGVKDKERLKAFRAVVDVMTLTATPIPRTLYMSMMGIRDLSIIDTPPVDRLAVKTI 819

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            +   +  + V E +   L  G + +++  +++           E   +L     + IA+ 
Sbjct: 820  VARFSE-ELVREAIMRELRRGGQVFFVHNRVQTI-----AKRAELIAALVPE--AKIAVG 871

Query: 522  HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            HG+M + + E VM  F +G   LLI TT+IE G+D+ +A+ +I+++A+ FGL+QL+QLRG
Sbjct: 872  HGQMGEQELEKVMLGFMHGETNLLICTTIIESGLDIPNANTLIVDHADRFGLSQLYQLRG 931

Query: 582  RVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636
            RVGR  +     LL      L+ ++  RL +L++  +   GF IA  D++ R  G++LG 
Sbjct: 932  RVGRSSQRGYAYLLIPGEGSLTSDARERLKILQDISELGAGFRIATHDMEIRGAGDMLGS 991

Query: 637  KQSGMPKFLIAQPELHDSLLEIA--RKDAKHILTQ-DPDL 673
            +QSG    +    EL++ +LE    R   + ++ Q +P++
Sbjct: 992  RQSGT--VIEIGFELYNQMLEETICRMRGEEMIEQVEPEI 1029


>gi|239787601|emb|CAX84069.1| Transcription-repair coupling factor [uncultured bacterium]
          Length = 1178

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 150/449 (33%), Positives = 232/449 (51%), Gaps = 17/449 (3%)

Query: 236  GQIALLLMRKQ--FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             ++A  L+R Q   +   G   +    + Q+     PF  T  Q +AI+ +L+DM++   
Sbjct: 592  LEMAEELVRLQAVRQANQGFGFSTPDPLLQEFAAGFPFEETPDQTAAIEAVLEDMAKSRP 651

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R++ GDVG GKT VAL A   AV  G Q  +++P  IL QQH+E   +      I VE
Sbjct: 652  MDRLVCGDVGFGKTEVALRAAFRAVMDGKQVAVLSPTTILTQQHFETFARRLAAYPITVE 711

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            I++     A ++KA+E IAHG   I++GTH L Q  + +  L L++VDE+ RFGV  + +
Sbjct: 712  ILSRFRTPAEQKKAVEMIAHGGVDIVVGTHRLLQKDVVFKDLGLLVVDEEQRFGVVHKER 771

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
            + Q      +L +TATPIPRTL L   G  DIS I   P  R  I+T ++  +R  +V E
Sbjct: 772  IKQMRATVDILTLTATPIPRTLHLAMSGLRDISIIATPPINRLAIRTFVLQYDR-QKVRE 830

Query: 474  RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
             +   +  G + +++   +++  +            L     + I + HG+M +   E +
Sbjct: 831  AVLREIYRGGQVFFVHNHVQDIDKMAV-----ELTELVPE--ARIGVAHGQMREGRLEKI 883

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            M SF      LL+ TT+IE G+D+  A+ III  A+ FGLAQLHQLRGRVGR +  +   
Sbjct: 884  MLSFYRQEFNLLLCTTIIENGVDIPTANTIIIHRADRFGLAQLHQLRGRVGRSKHRAYAY 943

Query: 594  LLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            L    P  LS+++  RL  +++  +   GF +A  D++ R  G ILG +QSG        
Sbjct: 944  LFIPHPQTLSEDALRRLEAIESMGELGAGFTLATHDMEIRGAGNILGEEQSGQI--REVG 1001

Query: 649  PELHDSLLEIARKDAKHILTQDPDLTSVR 677
             +L++ +L+ A  +        P      
Sbjct: 1002 FDLYNQMLKEAVDNLTAGNGHTPATAKPE 1030


>gi|323142048|ref|ZP_08076896.1| transcription-repair coupling factor [Phascolarctobacterium sp. YIT
           12067]
 gi|322413435|gb|EFY04306.1| transcription-repair coupling factor [Phascolarctobacterium sp. YIT
           12067]
          Length = 1090

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 147/459 (32%), Positives = 235/459 (51%), Gaps = 17/459 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +       LA ++  L +  Q +   G   + + ++ +      P+  T  Q 
Sbjct: 497 DWKRTTAKAAKAITELAEEL--LRLYAQRQIMPGHAFSPDCQLQKDFEAAFPYEETPDQL 554

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI +I  DM +   M R+L GDVG GKT VAL A   AV  G Q  ++AP  +LAQQHY
Sbjct: 555 KAIAEIKADMEKPQPMERLLCGDVGYGKTEVALRAAFKAVLDGKQVAVLAPTTVLAQQHY 614

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              K+  +N  + V ++        +R  L+ +A G+  I+IGTH L Q  + +  L L+
Sbjct: 615 ITFKERVRNFGVEVRLLNRFCTPKEQRTVLQEVADGKVDILIGTHRLLQPDVNFTSLGLL 674

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV Q+ K+ +      VL ++ATPIPRTL +  +   D+S I   P  R P+
Sbjct: 675 IIDEEQRFGVAQKEKIKKWHLGIDVLSLSATPIPRTLHMALVNGRDMSVIESPPEDRLPV 734

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T +   N    + E L+  L  G + Y+I  ++   +      +  +   L      SI
Sbjct: 735 ETYVSEYND-GMIKEALERELRRGGRIYYISNRVSALE-----PLAAKLRRLVPGI--SI 786

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I HG+M++   E  M +F  G C +L+ TT++E G+DV  A+ III+ A++FGL+QL+Q
Sbjct: 787 KIAHGQMNEDALEDAMITFYEGGCDVLLCTTIVENGLDVPLANTIIIDGADNFGLSQLYQ 846

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           +RGRVGR   ++    +Y P   LS+ +  RL  +++  +   GF IA  DL+ R  G +
Sbjct: 847 MRGRVGRSSRLAYAYFVYQPNKALSEIAEKRLQAIRDFTELGAGFKIAMRDLEIRGAGNL 906

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           LG +Q G    +      +  +LE   +  K+    +P+
Sbjct: 907 LGPQQHGHITGI--GFAAYCEMLEKTIERLKNGKEAEPE 943


>gi|306992387|gb|ADN19310.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 447

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 163/451 (36%), Positives = 263/451 (58%), Gaps = 8/451 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  KDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +    I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNVDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           F N    +L++TTVIEVG++V +A+++I+EN
Sbjct: 416 FVNREIDILVSTTVIEVGVNVPNATVMIVEN 446


>gi|229100846|ref|ZP_04231656.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-28]
 gi|228682572|gb|EEL36639.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-28]
          Length = 621

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 138/448 (30%), Positives = 231/448 (51%), Gaps = 17/448 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +     + +A  +  L   ++     G     +    Q+   + P+  T  Q 
Sbjct: 17  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETDDQL 74

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 75  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 134

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I++  Q+  I + +++    +  + + L+ +  G   I+IGTH +    + Y  L L+
Sbjct: 135 ETIRERFQDYPINIGLLSRFRTRKQQNETLKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 194

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 195 IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 254

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 255 QTYVVEYN-PALMREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPD--ARV 306

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 307 TYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 366

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 367 LRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 426

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARK 661
           LG +Q G    +     L+  +L+ A +
Sbjct: 427 LGAEQHGFIDSVGFD--LYSQMLKDAIE 452


>gi|229170904|ref|ZP_04298507.1| Transcription-repair-coupling factor [Bacillus cereus MM3]
 gi|228612570|gb|EEK69789.1| Transcription-repair-coupling factor [Bacillus cereus MM3]
          Length = 1176

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 231/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|225181416|ref|ZP_03734859.1| transcription-repair coupling factor [Dethiobacter alkaliphilus AHT
            1]
 gi|225167814|gb|EEG76622.1| transcription-repair coupling factor [Dethiobacter alkaliphilus AHT
            1]
          Length = 1177

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 145/496 (29%), Positives = 239/496 (48%), Gaps = 28/496 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW+       A  + LA ++  L   ++ +   G   + +    +      P+  T  Q 
Sbjct: 576  EWSRVKARVQASVQELAKELLALYAARETE--PGHAFSPDHSWQKDFEAAFPYEETPDQL 633

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI ++ QDM +     R+L GDVG GKT VAL     AV    QA  + P  +LAQQHY
Sbjct: 634  QAIAEVKQDMEKSTVTDRLLCGDVGYGKTEVALRGAFKAVMDDKQAAFLVPTTVLAQQHY 693

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  +   + V I++     A +++ ++ +  G   +++GTH +    I++  L  +
Sbjct: 694  HNFVERLEGFPVNVGILSRFQSPAEQKETIKGLKEGTIDLVVGTHRILSKDIRFRDLGFL 753

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ + ++        VL MTATPIPRTL ++ +G  D+S I   P  R PI
Sbjct: 754  VVDEEQRFGVRHKERIKMLKKNLDVLTMTATPIPRTLHMSLVGVRDMSVIETPPEDRYPI 813

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  +    + E +   L+ G + Y++  +++            +   L      ++
Sbjct: 814  QTYVLEYSD-ALIREAVMRELNRGGQVYFVHNRVQSIN-----RWAAKLQELMPEVRLAV 867

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M +   E VM  F  G   +L++TT++E G+D+ + + III++A+ FGLAQL+Q
Sbjct: 868  A--HGQMPEDRLEKVMMGFLEGEYDVLLSTTIVEAGLDIPNVNTIIIQDADKFGLAQLYQ 925

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+   L Y     L++ +  RL  +K       GF IA  DL+ R  G I
Sbjct: 926  LRGRVGRSNRIAYAYLTYQKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLEIRGAGNI 985

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA-----------RKDAKHILTQDPDLTSVRGQSIR 682
            LG +Q G    +    +L+  LLE A           R++ +  +  D  L +      R
Sbjct: 986  LGPEQHGFM--MAVGFDLYVKLLEDAIRTYKGQEEDTRQEPRIEIQADAYLPASYISDAR 1043

Query: 683  ILLYLYQYNEAFQFIR 698
              +  YQ   A + + 
Sbjct: 1044 QKIVFYQKVAAVESVE 1059


>gi|167740105|ref|ZP_02412879.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei 14]
          Length = 413

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 186/415 (44%), Positives = 259/415 (62%), Gaps = 12/415 (2%)

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           +Q + M R+LQGDVGSGKT+VA +A A A++AG QA +MAP  ILA+QH   ++ + +  
Sbjct: 1   TQPHPMQRLLQGDVGSGKTVVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEPL 60

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            + V  + G++    +R ALE  A G A ++IGTHA+ QD++++ +L LVIVDEQHRFGV
Sbjct: 61  GVSVAWLAGSLKAKDKRAALEAAALGTAQLVIGTHAMIQDTVEFARLGLVIVDEQHRFGV 120

Query: 409 QQRLKLTQKAT---------APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +QRL L  KA           PH L+M+ATPIPRTL +T   D+D+S I E P GR PI 
Sbjct: 121 EQRLALRAKAANAADGAAGFQPHQLMMSATPIPRTLAMTYYADLDVSTIDELPPGRTPIL 180

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T ++   R DEVI R++     G++ YW+CP IEE +    ++ VE + +L        +
Sbjct: 181 TRLVSDARRDEVIGRVREAALAGRQVYWVCPLIEESETLQLQTAVETYETLAAALPELKV 240

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++HGR++  +K +VMD+F     +LL+ATTVIEVG+DV +AS+++IE+AE FGLAQLHQ
Sbjct: 241 GLVHGRLAPAEKAAVMDAFSRNDVQLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQ 300

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           LRGRVGRG   S C+L+Y  PLS     RL  ++ T DGF IA  DL+ R  GE LG +Q
Sbjct: 301 LRGRVGRGTAASVCVLMYSGPLSIAGRARLKTMRETTDGFEIARRDLEIRGPGEFLGARQ 360

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           SG      A  E    L+E AR  A  ++   P++ +      R L    QY +A
Sbjct: 361 SGAAMLRFADLENDGWLIEPARDAAARLIAAHPEVVAQ--HLARWLGAREQYLKA 413


>gi|229009563|ref|ZP_04166790.1| Transcription-repair-coupling factor [Bacillus mycoides DSM 2048]
 gi|228751707|gb|EEM01506.1| Transcription-repair-coupling factor [Bacillus mycoides DSM 2048]
          Length = 1176

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 231/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+     P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESLFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|254448008|ref|ZP_05061472.1| transcription-repair coupling factor [gamma proteobacterium HTCC5015]
 gi|198262434|gb|EDY86715.1| transcription-repair coupling factor [gamma proteobacterium HTCC5015]
          Length = 1162

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 151/469 (32%), Positives = 238/469 (50%), Gaps = 17/469 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W             +A ++  +  R+  ++       +          + PF  T  Q +
Sbjct: 564  WGKQKARAAKQARDVAAELLAIHARRAARQG--RSFQIPQPEYNLFASDFPFEETPDQLN 621

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ +L D+ +   M R++ GDVG GKT VAL A   A     Q  I+ P  +LAQQH++
Sbjct: 622  AIEAVLDDLVKIQPMDRVVCGDVGFGKTEVALRAAFVAAMNQKQVCILVPTTLLAQQHFQ 681

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                   +  I VE ++    +  +   +  +A G+  I+IGTH L Q  I++ +L LVI
Sbjct: 682  NFSDRLADWPIRVESLSRFGSKKQQDAVIADMAEGKVDIVIGTHKLLQSDIRFKELGLVI 741

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV+ + K+ Q  +   +L +TATPIPRTL +   G  D+S I   P  R  +K
Sbjct: 742  IDEEQRFGVRHKEKMKQLRSEVDILTLTATPIPRTLNMAMSGLRDLSIIATPPQRRTGVK 801

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T I   N  + + E  +  LS G + Y++  ++E     N + +  +   +     +  A
Sbjct: 802  TFINEWND-ELIREACQRELSRGGQVYFVHNKVE-----NIQKIAAQIEDIVPE--ARTA 853

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+MS+ + E VM  F +    LL+ TT+IE GIDV  A+ III  A+ FGLAQLHQ+
Sbjct: 854  VAHGQMSERELEQVMLDFYHQRVNLLVCTTIIESGIDVPTANTIIINRADRFGLAQLHQM 913

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   L+  P   ++ ++  RL  +++ ED   GF +A  DL+ R  GE+L
Sbjct: 914  RGRVGRSHHRAYAYLMAPPEKAMTPDAAKRLEAIESLEDLGAGFTLATHDLEIRGAGELL 973

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            G +QSG          L+  +L+ A K  K+    D +L +  G +I +
Sbjct: 974  GAEQSGQI--QEVGFTLYTEMLDRAVKAFKNGEEFDAELPTDSGPTIDL 1020


>gi|124266762|ref|YP_001020766.1| transcription-repair coupling factor [Methylibium petroleiphilum PM1]
 gi|124259537|gb|ABM94531.1| transcription-repair coupling factor [Methylibium petroleiphilum PM1]
          Length = 1184

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 147/499 (29%), Positives = 236/499 (47%), Gaps = 20/499 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P  +    +W    R+        A ++  L  R+  ++   
Sbjct: 557  VAQLQLISRYTGVSAEEAPLHRLGSGQWEKAKRKAAEQVRDTAAELLNLYARRAAREGHA 616

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
               + +    +    +  F  T  Q +AI  ++QD+     M R++ GDVG GKT VAL 
Sbjct: 617  FRFSPQD--YEAFAASFGFEETADQRAAIHAVIQDLVSPKPMDRLVCGDVGFGKTEVALR 674

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A   AV  G Q  ++AP  +LA+QHY+ I        + V  ++        + A+  +A
Sbjct: 675  AAFVAVTGGKQVALLAPTTLLAEQHYQNIADRFAKWPVKVAEMSRFRSAKEIKAAMAGLA 734

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   I++GTH L     ++  L L+I+DE+HRFGV+ +  +        VL +TATPIP
Sbjct: 735  EGTIDIVVGTHKLLSQDTKFANLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIP 794

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  IKT +   +    + E +   L  G + Y++  ++
Sbjct: 795  RTLGMALEGLRDLSVIATAPQRRLAIKTFVRGESN-GTIREAVMRELKRGGQVYFLHNEV 853

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E  +     +       L     + IA+ HG+M + + E VM  F      LL+ +T+IE
Sbjct: 854  ETIE-----NRRRTLEELLPE--ARIAVAHGQMPERELERVMREFVAQKHNLLLCSTIIE 906

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GIDV  A+ I++  A+ FGLAQLHQLRGRVGR    +   LL      L+K +  RL  
Sbjct: 907  TGIDVPTANTIVMSRADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDVEGLTKQAAQRLQA 966

Query: 611  ---LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
               ++    GF +A  DL+ R  GE+LG  QSG    +    +L++ +L  A ++ K   
Sbjct: 967  IQDMEELGSGFYLAMHDLEIRGAGEVLGENQSGNM--MEVGFQLYNEMLATAVREMKA-- 1022

Query: 668  TQDPDLTSVRGQSIRILLY 686
             ++PDL +    +  + L+
Sbjct: 1023 GREPDLLNPVNVATDVNLH 1041


>gi|315656585|ref|ZP_07909472.1| DNA helicase RecG [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492540|gb|EFU82144.1| DNA helicase RecG [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 816

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 199/787 (25%), Positives = 326/787 (41%), Gaps = 139/787 (17%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK--RRPYKIL 93
                  DLL+Y P              +     VT+   +        ++  +    + 
Sbjct: 24  LGVLTLGDLLWYPPRRTYRWGELTNFDSLIPGTDVTVFAVVMDSHLGWTRRHDKAMLTVT 83

Query: 94  LNDG-------------------TGEITLLFFYRKTEML---KNVFFEGRKITV----TG 127
           L D                       +T+ FF +    L    N   +G         +G
Sbjct: 84  LQDQLETDARNEGGARPDLWGQRANRLTVRFFAKHPNALNLHANRLEKGTLAVFAGRLSG 143

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLI-----EAVYSLPTGLSVDLFKKIIV-EALSR 181
           K   L +   + HP Y      D           + +Y    GL      KII  + L  
Sbjct: 144 KPDSLASEAFLAHPEYRVLADYDPEIVKTLSTQPQPLYHATAGLPSWKIGKIIDAQLLMV 203

Query: 182 LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            P  +PE I   L ++++ P    A   +H+P     ++        L + E      AL
Sbjct: 204 NPAEIPEAIPDSLRRERNLPDAYTALLGLHHPETDAQYQAALDY---LRFREAFTLGAAL 260

Query: 241 LLMRKQFKKEIGIPINV--------------EGKIAQKILRNIPFSPTKSQESAIKDILQ 286
              R Q +      + V               G +  + +  +PF  T  Q    ++I  
Sbjct: 261 AKARNQIQSHPAWSLPVSQDVFESSTDSDGEPGDLVAQAVAGLPFQLTAGQRQVWEEISG 320

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           D++++  M R+LQG+VGSGKT+V+ +A  AAV+ G QA  MAP  +LA QH++ + +   
Sbjct: 321 DIAREVPMNRLLQGEVGSGKTVVSALACLAAVQNGFQAAFMAPTEVLAHQHFQTLNRLLG 380

Query: 347 NTQ---------------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +                 + + ++TG+ P   +R+  +R A G+  +++GT AL  +S+Q
Sbjct: 381 DLADPLGGLSGEQPGTDNVPLRLLTGSTPAPEKREIADRGAAGEPMLVVGTQALLTESLQ 440

Query: 392 YYKLILVIVDEQHRFGVQQR-LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +L LV+VDEQHRFGV+QR   LT+   APH L MTATPIPRT+ +T  GD+D+S + +
Sbjct: 441 LSRLALVVVDEQHRFGVEQRGALLTRGERAPHFLTMTATPIPRTVAMTVFGDLDVSVLRQ 500

Query: 451 KPAGRKPIKTVIIPINRIDEVIERL---KVVLSEGKKAYWICPQIE-------------- 493
            PAGR  ++T ++    +  V          + +G + Y +CP+I               
Sbjct: 501 LPAGRAEVQTFLVNEANVRWVTRAWSRAAEEIKQGGRVYVLCPKIAPDATGQNPVSSSDS 560

Query: 494 ----------------------------------EKKESNFRSVVERFNSLHEHFTSSIA 519
                                             ++          R  +L       I 
Sbjct: 561 RHPPQGDRKTRKPAVQTSWGDDLAGFGELEALEPDRILHTVTQTAARLATLPIFRDIPIG 620

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + H  +    K+  +  F  G   LL++TTV+EVG+DV +AS++II +A+ +G++QLHQL
Sbjct: 621 VAHSNLDSAAKQQAVSDFAAGRTPLLVSTTVVEVGMDVPEASMMIILDADRYGISQLHQL 680

Query: 580 RGRVGRGEEISSCILLYH---PPLSKN---------------SYTRLSVLKNTEDGFLIA 621
           RGR+GRG     C+ +     PP+S N               +  RL     + DGF +A
Sbjct: 681 RGRIGRGSRPGVCLAIAPLDFPPVSGNLPEMMALSGAGTLSPALARLCAFAASRDGFALA 740

Query: 622 EEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
           E DL  R+EG++LG  QSG   +  +        ++  A+  A  ++  DP L++   + 
Sbjct: 741 EADLTIRREGDVLGQNQSGRRSRLKVLSLVNDAEVITAAKAAAAALVAADPQLSAHP-EL 799

Query: 681 IRILLYL 687
            R++  L
Sbjct: 800 ARLVFEL 806


>gi|291166313|gb|EFE28359.1| transcription-repair coupling factor [Filifactor alocis ATCC 35896]
          Length = 1124

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 134/454 (29%), Positives = 226/454 (49%), Gaps = 17/454 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W           E +A  +  L   ++ +   G     +    ++     P+  T  Q 
Sbjct: 558 DWKKSKARTKKAVEAIAQDLVELYAVRENE--KGYSFQEDTVWQREFEDAFPYEETDDQL 615

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI+++ +DM     M R+L GDVG GKT VA+ A+  A   G Q V + P  ILAQQHY
Sbjct: 616 KAIEEVKRDMESSRVMDRLLCGDVGYGKTEVAIRAIFKACMDGKQVVFLVPTTILAQQHY 675

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             IK+   N  + V++++         +  + +A G   ++IGTH +  + I+Y  L L+
Sbjct: 676 VTIKERFLNYPLRVDLVSRFKTTKEVNETFDSLAKGSVDVVIGTHKILSEKIKYKNLGLI 735

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ RFGV+Q+  + +       L ++ATPIPRTL L+  G  ++S + E P  R PI
Sbjct: 736 VVDEEQRFGVKQKEAIKKMRMNIDCLTLSATPIPRTLHLSLSGIREMSILNEPPQDRHPI 795

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            T +    + + + + +   L+ G + +++  ++E   + +          L     + I
Sbjct: 796 VTYVTEA-KSNIIADAIDRELARGGQVFFVYNRVETIDKIHT-----LLKELVPD--ADI 847

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+ HG+M     E +M  F N    +L+ TT+IE G+D+ +A+ +I+ +A+  GL+QL+Q
Sbjct: 848 AVAHGQMPSRKLEQIMVDFLNREYDVLVCTTIIETGMDISNANTMIVYDADKMGLSQLYQ 907

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR  +      +Y     L++ +  RL  ++       GF +A +DL+ R  G +
Sbjct: 908 LRGRVGRSSKQGYAYFMYEKEKVLTEIAEKRLKTIREFTEFGSGFKVAMKDLEIRGAGNL 967

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           LG  QSG    +     L+  +L+ A K  K  L
Sbjct: 968 LGESQSGHIANIGYD--LYVRMLDEAIKKYKGEL 999


>gi|171778202|ref|ZP_02919431.1| hypothetical protein STRINF_00270 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283026|gb|EDT48450.1| hypothetical protein STRINF_00270 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 1169

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 147/452 (32%), Positives = 238/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +  + ++   +  +  
Sbjct: 559 KLNDGRFQKTKQKVSKQVEDIADDLLKLYA--ERSQLKGFAFSPDDDLQKEFDDDFAYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM ++  M R+L GDVG GKT VA+ A   AV+   Q  ++ P  +L
Sbjct: 617 TEDQLRSIKEIKHDMEEEKPMDRLLVGDVGFGKTEVAMRAAFKAVKDHKQVAVLVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQH+    +  +N  + V++++    +  +   LE++  GQ  IIIGTH L    +++ 
Sbjct: 677 AQQHFTNFSERFENYPVAVDVLSRFQSKKEQTATLEKLKKGQVDIIIGTHRLLSKDVEFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + +++  +++           ++ + L E 
Sbjct: 797 NRYPVQTYVLETN-PGLIREAIIREIDRGGQVFYVYNRVDTID--------QKVSELQEL 847

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F  G   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 848 VPEASIGFVHGQMSEIQLENTLMDFIEGVYDVLVATTIIETGVDISNVNTLFIENADHMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLDAIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGASQSGFID--SVGFEMYSQLLEEA 997


>gi|169347359|ref|ZP_02866297.1| hypothetical protein CLOSPI_00074 [Clostridium spiroforme DSM 1552]
 gi|169293976|gb|EDS76109.1| hypothetical protein CLOSPI_00074 [Clostridium spiroforme DSM 1552]
          Length = 1141

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 126/436 (28%), Positives = 221/436 (50%), Gaps = 15/436 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +S  ++  A        IA  L+        + G    V+ ++  +      +  T+ Q
Sbjct: 548 GSSQWQKVKAKARNKVDDIADKLIEIYAARMNQTGYAFPVDNEMQFEFENAFGYELTEDQ 607

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             ++K+I +DM +   M R+L GDVG GKT VAL A+  A+    Q   + P  IL+ QH
Sbjct: 608 VRSVKEIKEDMEKPQPMDRLLCGDVGFGKTEVALRAVFKAILGNKQVAFLCPTTILSMQH 667

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+ +    +N  + V ++        + + L+ +  G   +++GTH +    +++  + L
Sbjct: 668 YKTMLDRFENFPVKVALLNRFTSTKQKNQILKDLKEGNIDLLVGTHRILSKDVEFKDIGL 727

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           + +DE+ RFGV+Q+ K+ +      VL ++ATPIPRTL ++ +G   +S+I   P  R+P
Sbjct: 728 LCIDEEQRFGVKQKEKIKEYRKTIDVLTLSATPIPRTLQMSLMGIRGLSQIETPPKNRQP 787

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           ++T +I  N +  + + ++  L+   + +++  +      +  +              + 
Sbjct: 788 VQTYVIEKNDV-LIKQIIERELARDGQVFYLHNRTSNIANTADKIG-------RMVPGAK 839

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + + HG+M   + E VM  F N    +LI TT+IE GID+ +A+ II+ENA+ FGL+QL+
Sbjct: 840 VVVGHGKMDKNEIEDVMMRFVNKEYNVLICTTIIETGIDIPNANTIIVENADKFGLSQLY 899

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           Q++GRVGR    +   LLY+P   L++ +  RL  +K       G+ IA  DL  R  G+
Sbjct: 900 QIKGRVGRSNRGAYAYLLYNPSKVLTEEASKRLKAIKEFTELGSGYKIAMRDLAIRGAGD 959

Query: 633 ILGIKQSGMPKFLIAQ 648
           ILG  QSG    +   
Sbjct: 960 ILGGTQSGFIDSIGFD 975


>gi|298346962|ref|YP_003719649.1| putative DNA helicase RecG [Mobiluncus curtisii ATCC 43063]
 gi|304389327|ref|ZP_07371292.1| possible DNA helicase RecG [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298237023|gb|ADI68155.1| possible DNA helicase RecG [Mobiluncus curtisii ATCC 43063]
 gi|304327445|gb|EFL94678.1| possible DNA helicase RecG [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 816

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 199/787 (25%), Positives = 326/787 (41%), Gaps = 139/787 (17%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK--RRPYKIL 93
                  DLL+Y P              +     VT+   +        ++  +    + 
Sbjct: 24  LGVLTLGDLLWYPPRRTYRWGELTNFDSLIPGTDVTVFAVVMDSHLGWTRRHDKAMLTVT 83

Query: 94  LNDG-------------------TGEITLLFFYRKTEML---KNVFFEGRKITV----TG 127
           L D                       +T+ FF +    L    N   +G         +G
Sbjct: 84  LQDQLETDARNEGGARPDLWGQRANRLTVRFFAKHPNALNLHANRLEKGTLAVFAGRLSG 143

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNFPLI-----EAVYSLPTGLSVDLFKKIIV-EALSR 181
           K   L +   + HP Y      D           + +Y    GL      KII  + L  
Sbjct: 144 KPDSLASEAFLAHPEYRVLADYDPEIVKTLSTQPQPLYHATAGLPSWKIGKIIDAQLLMV 203

Query: 182 LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            P  +PE I   L ++++ P    A   +H+P     ++        L + E      AL
Sbjct: 204 NPAEIPEAIPDSLRRERNLPDAYTALLGLHHPETDAQYQAALDY---LRFREAFTLGAAL 260

Query: 241 LLMRKQFKKEIGIPINV--------------EGKIAQKILRNIPFSPTKSQESAIKDILQ 286
              R Q +      + V               G +  + +  +PF  T  Q    ++I  
Sbjct: 261 AKARNQIQSHPAWSLPVSQDVFESSTDSDGEPGDLVAQAVAGLPFQLTAGQRQVWEEIAG 320

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
           D++++  M R+LQG+VGSGKT+V+ +A  AAV+ G QA  MAP  +LA QH++ + +   
Sbjct: 321 DIAREVPMNRLLQGEVGSGKTVVSALACLAAVQNGFQAAFMAPTEVLAHQHFQTLNRLLG 380

Query: 347 NTQ---------------IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +                 + + ++TG+ P   +R+  +R A G+  +++GT AL  +S+Q
Sbjct: 381 DLADPLGGLSGEQPGTDNVPLRLLTGSTPAPEKREIADRGAAGEPMLVVGTQALLTESLQ 440

Query: 392 YYKLILVIVDEQHRFGVQQR-LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +L LV+VDEQHRFGV+QR   LT+   APH L MTATPIPRT+ +T  GD+D+S + +
Sbjct: 441 LSRLALVVVDEQHRFGVEQRGALLTRGERAPHFLTMTATPIPRTVAMTVFGDLDVSVLRQ 500

Query: 451 KPAGRKPIKTVIIPINRIDEVIERL---KVVLSEGKKAYWICPQIE-------------- 493
            PAGR  ++T ++    +  V          + +G + Y +CP+I               
Sbjct: 501 LPAGRAEVQTFLVNEANVRWVTRAWSRAAEEIKQGGRVYVLCPKIAPDATGQNPVSSSDS 560

Query: 494 ----------------------------------EKKESNFRSVVERFNSLHEHFTSSIA 519
                                             ++          R  +L       I 
Sbjct: 561 RHPPQGDRKTRKPAVQTSWGDDLAGFGELEALEPDRILHTVTQTAARLAALPIFRDVPIG 620

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + H  +    K+  +  F  G   LL++TTV+EVG+DV +AS++II +A+ +G++QLHQL
Sbjct: 621 VAHSNLDSAAKQQAVSDFAAGRTPLLVSTTVVEVGMDVPEASMMIILDADRYGISQLHQL 680

Query: 580 RGRVGRGEEISSCILLYH---PPLSKN---------------SYTRLSVLKNTEDGFLIA 621
           RGR+GRG     C+ +     PP+S N               +  RL     + DGF +A
Sbjct: 681 RGRIGRGSRPGVCLAIAPLDFPPVSGNLPEMMALAGAGTLSPALARLCAFAASRDGFALA 740

Query: 622 EEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
           E DL  R+EG++LG  QSG   +  +        ++  A+  A  ++  DP L++   + 
Sbjct: 741 EADLTIRREGDVLGQNQSGRRSRLKVLSLVNDAEVITAAKVAAAALVAADPQLSAHP-EL 799

Query: 681 IRILLYL 687
            R++  L
Sbjct: 800 ARLVFEL 806


>gi|292493142|ref|YP_003528581.1| transcription-repair coupling factor [Nitrosococcus halophilus Nc4]
 gi|291581737|gb|ADE16194.1| transcription-repair coupling factor [Nitrosococcus halophilus Nc4]
          Length = 1158

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 155/507 (30%), Positives = 251/507 (49%), Gaps = 21/507 (4%)

Query: 178  ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAG 236
            AL        ++    L      S     +    P  K    +W    R+       +A 
Sbjct: 520  ALEYADGDKLYVPVSSL---HLISRYTGASPEAAPLHKLGSGQWERAKRKARERVRDVAA 576

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  L +  Q        +           R+ PF  T  Q  AI+ ++ D++ +  M R
Sbjct: 577  EL--LAIYAQRAARKKPALPPPDSHYAAFARDFPFEETPDQADAIEAVIADLTSEKPMDR 634

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VA+ A   A +AG Q  ++ P  +LAQQH++  K    +  + VE+++
Sbjct: 635  LVCGDVGFGKTEVAMRAAFIASQAGKQVAVLVPTTLLAQQHHQSFKDRFADWPVRVEVMS 694

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                +  +   +  IA G+  I+IGTH L Q++I +  L LVI+DE+HRFGV+Q+ ++  
Sbjct: 695  RFRSRKEQETIVNGIADGRVDIVIGTHKLLQENIHFKDLGLVIIDEEHRFGVRQKERMKA 754

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                  VL +TATPIPRTL ++  G  D+S I   PA R  IKT +   +    + E L 
Sbjct: 755  LRAEVDVLTLTATPIPRTLHMSLSGLRDLSIIATPPARRLAIKTFVRQWDD-SLLREALL 813

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              +  G + Y++  ++E  ++        R  +L     + + + HG+M + + E VM +
Sbjct: 814  REIKRGGQIYFLHNEVESIEKMAH-----RVQTLFPE--AKVGVAHGQMRERELEQVMLN 866

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F +    +L+ TT+IE GID+  A+ III  A+ FGLAQL+QLRGRVGR    +   L+ 
Sbjct: 867  FYHRRFNVLVCTTIIETGIDIPSANTIIIHRADKFGLAQLYQLRGRVGRSHHRAYAYLIV 926

Query: 597  HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
             P   ++ ++  RL  +++ E+   GF +A  D++ R  GE+LG  QSG  + +     L
Sbjct: 927  PPRSVMTADAVKRLEAIESLEELGAGFTLATHDMEIRGAGELLGKGQSGQMQEIGFS--L 984

Query: 652  HDSLLEIARKDAKHILTQDPDLTSVRG 678
            ++ LLE A    K   T D +  +  G
Sbjct: 985  YNDLLERAVNSLKSGQTLDLEQPTEHG 1011


>gi|186685547|ref|YP_001868743.1| transcription-repair coupling factor [Nostoc punctiforme PCC 73102]
 gi|186467999|gb|ACC83800.1| transcription-repair coupling factor [Nostoc punctiforme PCC 73102]
          Length = 1170

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 144/449 (32%), Positives = 234/449 (52%), Gaps = 18/449 (4%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
             +  + R A  +L    + L   R Q +         +    +++  + P+ PT  Q  A
Sbjct: 574  NTKNKVRKAIKKLAVDLLKLYAARSQQQG---FSFPSDMPWQEELEDSFPYQPTTDQLKA 630

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            ++D+ +DM     M R++ GDVG GKT VA+ A+  AV AG Q  ++AP  IL QQHY  
Sbjct: 631  VQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAVFKAVTAGKQVALLAPTTILTQQHYHT 690

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            +K+      + V ++        RR   +R+A G+  +++GT  L    + +  L L++V
Sbjct: 691  LKERFAPYPVNVGLLNRFRSAEERRDIQKRLATGELDVVVGTQQLLGKGVMFRDLGLLVV 750

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+ RFGV Q+ K+    T   VL ++ATPIPRTL ++  G  ++S IT  P  R+ IKT
Sbjct: 751  DEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSLITTPPPTRRAIKT 810

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             + PIN  + +   ++  L  G + +++ P+++  +E+         N       +  AI
Sbjct: 811  HLSPINS-ESIRSAIRQELDRGGQVFYVVPRVDGIEET-------TANLREVIPGARFAI 862

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+M + + ES M +F NG   +L+ TT+IE G+D+   + I+IE+A  FGLAQL+QLR
Sbjct: 863  AHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILIEDAHRFGLAQLYQLR 922

Query: 581  GRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
            GRVGR    +   L Y     LS  +  RL  ++       G+ +A  D++ R  G +LG
Sbjct: 923  GRVGRAGIQAHAWLFYPKQRQLSDAARQRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLG 982

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             +QSG    +     L+  +LE A ++ +
Sbjct: 983  AEQSGQMDAIGFD--LYMEMLEEAIREIR 1009


>gi|169825685|ref|YP_001695843.1| transcription-repair coupling factor [Lysinibacillus sphaericus
            C3-41]
 gi|168990173|gb|ACA37713.1| Transcription-repair coupling factor [Lysinibacillus sphaericus
            C3-41]
          Length = 1169

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 145/477 (30%), Positives = 241/477 (50%), Gaps = 23/477 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +  +  + +A  +  L  +++ +   G     +    +       +  T+ Q 
Sbjct: 569  EWKKAKAKVSSAVQDIADDLIKLYAKREAE--KGHAFTPDNDDQRNFEAMFAYEETEDQL 626

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I ++ +DM ++  M R++ GDVG GKT VA+ A   A++ G Q   + P  ILAQQHY
Sbjct: 627  RSIVEVKRDMERERPMDRLVCGDVGYGKTEVAIRAAFKAIQDGKQVAFLVPTTILAQQHY 686

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I V +++    +  +   L+ +  GQ  I+IGTH +    + +  L L+
Sbjct: 687  ETIRERFQDFAINVGLLSRFRSKKEQTATLKGLKEGQVDIVIGTHRILSKDLIFQDLGLL 746

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  D+S I   PA R P+
Sbjct: 747  IVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSMVGVRDLSVIETPPANRFPV 806

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  +    V E ++  ++ G + +++  ++E     +    VE    L     + I
Sbjct: 807  QTYVMEHSG-ALVREAIEREMARGGQVFYLYNRVE-----DMARKVEEIQVLVPE--ARI 858

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+MS+ + ESV+ SF  G   +L+ TT+IE G+D+ + + +I+ +A+  GLAQL+Q
Sbjct: 859  GHAHGKMSETELESVILSFLEGDYDVLVTTTIIETGVDIPNVNTLIVHDADRMGLAQLYQ 918

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L+  +  RL  +K       GF IA  DL  R  G +
Sbjct: 919  LRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 978

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            LG +Q G    +     L+  +L+ A      I  +   +       I ILL +  Y
Sbjct: 979  LGAQQHGFIDSVGFD--LYSQMLQEA------IAERQTGVKKEEKPEIEILLSVDAY 1027


>gi|120610265|ref|YP_969943.1| transcription-repair coupling factor [Acidovorax citrulli AAC00-1]
 gi|120588729|gb|ABM32169.1| transcription-repair coupling factor [Acidovorax citrulli AAC00-1]
          Length = 1163

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 152/498 (30%), Positives = 237/498 (47%), Gaps = 22/498 (4%)

Query: 196  KKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            +    S     +    P  K    +W    R+        A ++  +  R+  ++     
Sbjct: 535  QLQLISRYTGVSADEAPLHKLGSGQWEKAKRKAAEQVRDSAAELLNIYARRAAREG--HA 592

Query: 255  INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
                 +  ++   +  F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A 
Sbjct: 593  FRYSPQDYEQFANDFGFEETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAA 652

Query: 315  AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
              AV  G Q   +AP  +LA+QHY+ +        + +  ++          A++ I  G
Sbjct: 653  FVAVTGGKQVAFLAPTTLLAEQHYQTLVDRFSKWPVKIAEVSRFRSGKEITAAIKGIGDG 712

Query: 375  QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
               I++GTH L  +S +++ L L+I+DE+HRFGV+ + ++ Q      VL +TATPIPRT
Sbjct: 713  TVDIVVGTHKLLSESTKFHNLGLLIIDEEHRFGVRHKEQMKQLRAEVDVLTLTATPIPRT 772

Query: 435  LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            L +   G  D+S I   P  R  IKT +        + E +   L  G + Y++  ++E 
Sbjct: 773  LGMALEGLRDLSVIATAPQRRLAIKTFVRNEG-TGVIREAVLRELKRGGQCYFLHNEVET 831

Query: 495  KKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             +         R   L E    + IA+ HG+M + + E VM  F      +L+ +T+IE 
Sbjct: 832  IE--------NRRQKLEEILPEARIAVAHGQMPERELEKVMRDFVAQRYNILLCSTIIET 883

Query: 554  GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSV- 610
            GIDV  A+ II+  A+ FGLAQLHQLRGRVGR    +   L+      L+K +  RL   
Sbjct: 884  GIDVPTANTIIMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDVDGLTKQAAQRLDAI 943

Query: 611  --LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
              ++    GF +A  DL+ R  GE+LG  QSG    L    +L++ +L  A K  K    
Sbjct: 944  QQMEELGSGFYLAMHDLEIRGAGEVLGESQSGNM--LEVGFQLYNEMLAEAVKSLKA--G 999

Query: 669  QDPDLTSVRGQSIRILLY 686
            ++PDL +    +  I L+
Sbjct: 1000 KEPDLLAPLSVTTDINLH 1017


>gi|330826160|ref|YP_004389463.1| transcription-repair coupling factor [Alicycliphilus denitrificans
            K601]
 gi|329311532|gb|AEB85947.1| transcription-repair coupling factor [Alicycliphilus denitrificans
            K601]
          Length = 1163

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 155/523 (29%), Positives = 241/523 (46%), Gaps = 31/523 (5%)

Query: 180  SRLPVLPEWIEKDLLQK---------KSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLA 229
               P L E++  +   K                   +    P  K    +W    R+   
Sbjct: 510  DGTPALQEFLHLEYADKAVLYVPVSQLQLIGRYTGVSADEAPLHKLGSGQWEKAKRKAAE 569

Query: 230  YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
                 A ++  +  R+  ++          +  ++ + +  F  T  Q +AI  ++QDM 
Sbjct: 570  QVRDAAAELLNIYARRAARQG--HAFRYSPQDYEQFVADFGFEETADQNAAIHAVVQDMI 627

Query: 290  QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
                M R++ GDVG GKT VAL A   AV  G Q   +AP  +LA+QHY  +        
Sbjct: 628  SPRPMDRLVCGDVGFGKTEVALRACFVAVTGGKQVAFLAPTTLLAEQHYRTLCDRFAKWP 687

Query: 350  IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
            + V  ++          A++ IA G   I++GTH L  +S ++  L L+I+DE+HRFGV+
Sbjct: 688  VKVAEVSRFRSGKEITAAVKGIADGTVDIVVGTHKLLSESTKFKNLGLLIIDEEHRFGVR 747

Query: 410  QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             +  + Q      VL +TATPIPRT+ +   G  D+S I   P  R  IKT +       
Sbjct: 748  HKEAMKQLRAEVDVLTLTATPIPRTMGMALEGLRDLSVIATAPQRRLAIKTFVRSEG-TG 806

Query: 470  EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDI 528
             + E +   L  G + Y++  ++E  +         R   L E    + IA+ HG+M + 
Sbjct: 807  VIREAVLRELKRGGQCYFLHNEVETIE--------NRRQKLEEILPEARIAVAHGQMPER 858

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            + E VM  F      +L+ +T+IE GIDV  A+ I+I  A+ FGLAQLHQLRGRVGR   
Sbjct: 859  ELEKVMRDFVAQRYNILLCSTIIETGIDVPSANTILISRADKFGLAQLHQLRGRVGRSHH 918

Query: 589  ISSCILLYH--PPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
             +   L+      L+K +  RL     ++    GF +A  DL+ R  GE+LG  QSG   
Sbjct: 919  QAYAYLMVPDLDGLTKQAQQRLDAIQQMEELGSGFYLAMHDLEIRGAGEVLGENQSGNM- 977

Query: 644  FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
             L    +L++ +L  A +  K    ++PDL +    +  I L+
Sbjct: 978  -LEVGFQLYNEMLAEAVRCLKA--GKEPDLLAPMQAATDINLH 1017


>gi|297528423|ref|YP_003669698.1| transcription-repair coupling factor [Geobacillus sp. C56-T3]
 gi|297251675|gb|ADI25121.1| transcription-repair coupling factor [Geobacillus sp. C56-T3]
          Length = 1177

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 133/435 (30%), Positives = 224/435 (51%), Gaps = 15/435 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            + +  + +   G   + + ++ ++     P+  T+ Q  +I++I +DM     M R+L G
Sbjct: 592  IKLYAEREASKGYAFSPDTEMQREFEAAFPYQETEDQLRSIEEIKRDMESDKPMDRLLCG 651

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   A+  G Q   + P  ILAQQHYE +++  Q   I V ++     
Sbjct: 652  DVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGFPINVGLLNRFRT 711

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            +  + + ++ +  G   ++IGTH L    +++  L L+I+DE+ RFGV  + K+ Q    
Sbjct: 712  KKQQAEIIKGLKDGTIDMVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVAHKEKIKQLKAN 771

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL +TATPIPRTL ++ +G  D+S I   P  R P++T ++     +   E ++  L+
Sbjct: 772  IDVLTLTATPIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEY-TPELAKEAIERELA 830

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
               + +++   IE+          E    L     + +  +HGRMS+ + ES + +F  G
Sbjct: 831  RDGQVFFLYNHIEDID-----LKAEEIAQLVPE--ARVTYVHGRMSETELESTILAFLEG 883

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
               +L+ TT+IE GID+ + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y    
Sbjct: 884  QYDVLVTTTIIETGIDIPNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDK 943

Query: 600  -LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             L++ +  RL  +K       GF IA  DL  R  G ILG +Q G    +     L+  +
Sbjct: 944  VLNEAAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNILGAEQHGFIDSVGFD--LYSQM 1001

Query: 656  LEIARKDAKHILTQD 670
            L+ A +  + I  +D
Sbjct: 1002 LKEAIEKRRGIKRED 1016


>gi|229053900|ref|ZP_04195335.1| Transcription-repair-coupling factor [Bacillus cereus AH603]
 gi|228721441|gb|EEL72961.1| Transcription-repair-coupling factor [Bacillus cereus AH603]
          Length = 1176

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 231/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+     P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESLFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|302388384|ref|YP_003824206.1| transcription-repair coupling factor [Clostridium saccharolyticum
            WM1]
 gi|302199012|gb|ADL06583.1| transcription-repair coupling factor [Clostridium saccharolyticum
            WM1]
          Length = 1179

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 141/446 (31%), Positives = 227/446 (50%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +A ++  L   +Q  +  G     +    ++     P+  T+ Q 
Sbjct: 579  QWNRTKTRVKGAVKEIAKELVQLYAARQ--QTHGFQYGEDTVWQKEFEEMFPYEETEDQW 636

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+    DM  +  M R++ GDVG GKT +AL A   AV+ G Q V + P  ILAQQHY
Sbjct: 637  DAIESTKSDMESRKIMDRLICGDVGYGKTEIALRAAFKAVQDGKQVVYLVPTTILAQQHY 696

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  ++  + V++++        +K LE +  G   I+IGTH +    +Q+  L L+
Sbjct: 697  NTFAQRMKDFPVRVDLMSRFRTPGQMKKTLEDLKRGMVDIVIGTHRVLSKDVQFKDLGLL 756

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S + E P  R PI
Sbjct: 757  IIDEEQRFGVAHKEKIKQLKENVDVLTLTATPIPRTLHMSLVGIRDMSVLEEPPVDRMPI 816

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + V E +   LS G + Y++  ++    E          + L     +++
Sbjct: 817  QTYVMEYND-EMVREAIHRELSRGGQVYYVYNRVSNIDEVANH-----ISGLVPE--AAV 868

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M + + E +M  F NG   +L+ TT+IE G+D+ +A+ +II++A+H GL+QL+Q
Sbjct: 869  TFAHGQMHEHELERIMFDFVNGEIDVLVCTTIIETGLDIPNANTMIIQDADHMGLSQLYQ 928

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    S   L+Y     L + +  RL  ++       G  IA  DL+ R  G +
Sbjct: 929  LRGRVGRSSRTSYAFLMYKRDKLLKEEAEKRLQAIREFTELGSGIKIAMRDLEIRGAGNV 988

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G  + +     L+  LL  A
Sbjct: 989  LGAEQHGHMEAVGYD--LYCKLLNQA 1012


>gi|326316443|ref|YP_004234115.1| transcription-repair coupling factor [Acidovorax avenae subsp. avenae
            ATCC 19860]
 gi|323373279|gb|ADX45548.1| transcription-repair coupling factor [Acidovorax avenae subsp. avenae
            ATCC 19860]
          Length = 1163

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 163/591 (27%), Positives = 261/591 (44%), Gaps = 39/591 (6%)

Query: 117  FFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKII- 175
            F    ++   G   + + +   V               L + V     G+    ++ +I 
Sbjct: 445  FVTETELFAAGTTTRRRKKQEQVS-DVEALIKDLSELTLGDPVVHSAHGI--GRYRGLIH 501

Query: 176  ----VEALSRLPVLPEWIEKDLLQK---------KSFPSIAEAFNIIHNP-RKAKDFEWT 221
                 +     P + E++  +   K             S     +    P  K    +W 
Sbjct: 502  MDVGQKNPDGTPAMQEFLHLEYADKAVLYVPVSQLQLISRYTGVSADEAPLHKLGSGQWE 561

Query: 222  SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
               R+        A ++  +  R+  ++          +  ++   +  F  T  Q +AI
Sbjct: 562  KAKRKAAEQVRDSAAELLNIYARRAAREG--HAFRYSPQDYEQFANDFGFEETADQNAAI 619

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
              ++QDM     M R++ GDVG GKT VAL A   AV  G Q   +AP  +LA+QHY+ +
Sbjct: 620  HAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQVAFLAPTTLLAEQHYQTL 679

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
                    + +  ++          A++ I  G   I++GTH L  +S +++ L L+I+D
Sbjct: 680  VDRFSKWPVKIAEVSRFRSGKEITAAIKGIGDGTVDIVVGTHKLLSESTKFHNLGLLIID 739

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+HRFGV+ + ++ Q      VL +TATPIPRTL +   G  D+S I   P  R  IKT 
Sbjct: 740  EEHRFGVRHKEQMKQLRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTF 799

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAI 520
            +        + E +   L  G + Y++  ++E  +         R   L E    + IA+
Sbjct: 800  VRNEG-TGVIREAVLRELKRGGQCYFLHNEVETIE--------NRRQKLEEILPEARIAV 850

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+M + + E VM  F      +L+ +T+IE GIDV  A+ II+  A+ FGLAQLHQLR
Sbjct: 851  AHGQMPERELEKVMRDFVAQRYNILLCSTIIETGIDVPTANTIIMSRADKFGLAQLHQLR 910

Query: 581  GRVGRGEEISSCILLYH--PPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEILG 635
            GRVGR    +   L+      L+K +  RL     ++    GF +A  DL+ R  GE+LG
Sbjct: 911  GRVGRSHHQAYAYLMVPDVDGLTKQAAQRLDAIQQMEELGSGFYLAMHDLEIRGAGEVLG 970

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
              QSG    L    +L++ +L  A K  K    ++PDL S    +  I L+
Sbjct: 971  ENQSGNM--LEVGFQLYNEMLSEAVKSLKA--GKEPDLLSPLSVTTDINLH 1017


>gi|294786766|ref|ZP_06752020.1| transcription-repair coupling factor [Parascardovia denticolens
            F0305]
 gi|315226389|ref|ZP_07868177.1| transcription-repair coupling factor [Parascardovia denticolens DSM
            10105]
 gi|294485599|gb|EFG33233.1| transcription-repair coupling factor [Parascardovia denticolens
            F0305]
 gi|315120521|gb|EFT83653.1| transcription-repair coupling factor [Parascardovia denticolens DSM
            10105]
          Length = 1206

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 126/450 (28%), Positives = 232/450 (51%), Gaps = 18/450 (4%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
             + A+ R    E+    + L   R++ +       + +    +++    P+  T  Q + 
Sbjct: 609  QTKAKARKKVKEIAQDLVKLYAARQRTQG---FAFSPDTPWQRELEEAFPYQETPDQLTT 665

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            I ++  DM +   M R++ GDVG GKT +A+ A   A++   Q  ++ P  +LAQQH+E 
Sbjct: 666  IDEVKADMEKPIPMDRLICGDVGFGKTEIAVRAAFKAIQDSKQVAVLVPTTLLAQQHFET 725

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
                 +   + V++++     A  ++ +E +  G   ++IGTH L    I++  L LVI+
Sbjct: 726  FTDRYEGFPVTVKMMSRFQSAAENKETIEGLRDGSVDLVIGTHKLLNPQIKFKDLGLVII 785

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+ T
Sbjct: 786  DEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLDTPPEDRLPVLT 845

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             +       +V+  ++  L  G + +++  ++++        V      L     + I +
Sbjct: 846  YVGAYEDT-QVVAAIRRELLRGGQVFFVHNRVQDIS-----KVAAHIKDLVPE--AKIGM 897

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+M +   ++++  F +    +L+ TT++E G+D+ +A+ +I++ A+ FGL+QLHQLR
Sbjct: 898  AHGKMGEKQLDNIIHDFWHRDIDVLVCTTIVETGLDISNANTLIVDRADRFGLSQLHQLR 957

Query: 581  GRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
            GRVGRG E +    LY P  P+++ ++ RLS +        G+ +A +DL+ R  G +LG
Sbjct: 958  GRVGRGWERAYAYFLYDPAKPMTQTAHDRLSTIAQNTALGAGYDVAMKDLEIRGTGNLLG 1017

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             +QSG  +      +L+  ++  A +D K 
Sbjct: 1018 GEQSGHIE--GVGFDLYVRMVSDAVQDYKE 1045


>gi|213962106|ref|ZP_03390370.1| transcription-repair coupling factor [Capnocytophaga sputigena
           Capno]
 gi|213955112|gb|EEB66430.1| transcription-repair coupling factor [Capnocytophaga sputigena
           Capno]
          Length = 1110

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 135/451 (29%), Positives = 228/451 (50%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++  A  + +A  +  L  ++  K+  G     +  +  ++  +  +  T  Q  
Sbjct: 502 WKALKQKTKARVKEIAFNLIQLYAKR--KEAQGFAFAHDSYMQNELEASFLYEDTPDQSK 559

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  ++  DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LA QH++
Sbjct: 560 ATAEVKADMESSKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTVLAFQHFQ 619

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + ++ +        ++  LE +A GQ  IIIGTH +  + + Y  L L+I
Sbjct: 620 TFSQRMKDFPVRIDYLNRFRTAKEKKIILEELAKGQLDIIIGTHQIVGEKVTYKDLGLLI 679

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S I   P  R PI 
Sbjct: 680 VDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLSVINTPPPNRYPID 739

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + ++P N  + + + ++  +  G + +++  ++E  +E            L     + IA
Sbjct: 740 SQVVPFNE-EVIRDGIRYEIQRGGQVFFMHNRVENIQEVAG-----MIQRLLPD--ARIA 791

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E  M +F  G   +L+ATT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 792 IGHGQMDGKKLEETMLAFMEGRYDVLVATTIIESGLDVPNANTIFINNAHNFGLSDLHQM 851

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   +S ++  R+  +    D   G  IA +DL+ R  G++L
Sbjct: 852 RGRVGRSNKKAFCYFITPPLIAMSDDARKRIEAIAQFSDLGSGLNIAMKDLEIRGAGDLL 911

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG    +      +  +L+ A  + K 
Sbjct: 912 GGEQSGFINEIGFD--TYQKILQEAITELKE 940


>gi|213580805|ref|ZP_03362631.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 412

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 136/424 (32%), Positives = 210/424 (49%), Gaps = 20/424 (4%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDE 232
           L  L    + E +  +L Q     S+ EA   +H P       D E    PA+ RL  +E
Sbjct: 171 LELLDTCAIAELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +++L +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+   
Sbjct: 229 LLAHNLSMLALRAGAQRYHTQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDV 288

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
            M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V
Sbjct: 289 PMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEV 348

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL
Sbjct: 349 GWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL 408

Query: 413 KLTQ 416
            L +
Sbjct: 409 ALWE 412


>gi|315222838|ref|ZP_07864723.1| transcription-repair coupling factor [Streptococcus anginosus
           F0211]
 gi|315188074|gb|EFU21804.1| transcription-repair coupling factor [Streptococcus anginosus
           F0211]
          Length = 1168

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 238/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    +      E +A  +  L    +  +  G   + +    Q+   + P+  
Sbjct: 559 KLNDGRFQKTKQRVQHQVEDIAEDLIKLY--SERSQLKGFAFSSDDSYQQEFDNDFPYVE 616

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK++ +DM   + M R+L GDVG GKT VA+ A   AV    Q  I+ P  +L
Sbjct: 617 TEDQLRSIKEVKKDMESDHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAILVPTTVL 676

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+   +  I +E+++    ++ ++  LE++  GQ  IIIGTH L    I + 
Sbjct: 677 AQQHYTNFKERFNDFPINIEVLSRFKSKSEQKIILEKLKKGQVDIIIGTHRLLSKDIVFA 736

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 737 DLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 796

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 797 NRYPVQTYVLENNAT-VIRDAVLREMDRGGQVYYLYNKVDTME--------QKVSELKEL 847

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ TT+IE G+D+ + + + IENA++ G
Sbjct: 848 IPEASIGYVHGQMSEILLENTLLDFINGEYDILVTTTIIETGVDIPNVNTLFIENADYMG 907

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGR+GR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 908 LSTLYQLRGRIGRSNRIAYAYLMYRPDKILTEISEKRLETIKGFTELGSGFKIAMRDLSI 967

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 968 RGAGNILGSSQSGFID--SVGFEMYSQLLEEA 997


>gi|306992319|gb|ADN19276.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 442

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 162/447 (36%), Positives = 260/447 (58%), Gaps = 8/447 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LHDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFREAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASI 562
            F NG   +L++TTVIEVG++V +A++
Sbjct: 416 EFVNGKIDILVSTTVIEVGVNVPNATV 442


>gi|308066876|ref|YP_003868481.1| transcription-repair coupling factor (TRCF) [Paenibacillus polymyxa
           E681]
 gi|305856155|gb|ADM67943.1| Transcription-repair coupling factor (TRCF) [Paenibacillus polymyxa
           E681]
          Length = 1175

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 134/445 (30%), Positives = 229/445 (51%), Gaps = 17/445 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT    +  +  + +A  +  L   +Q     G     +    Q+     P+  T+ Q 
Sbjct: 561 EWTRVKSKVRSSVQDIADDLIKLYAERQSA--PGFAFEKDSPEQQEFEDMFPYDETRDQI 618

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I +DM Q   M R+L GDVG GKT VA+ A   +   G Q  ++ P  ILAQQHY
Sbjct: 619 RAIEEIKKDMEQSRPMDRLLCGDVGYGKTEVAIRAAFKSAIEGKQVAVLVPTTILAQQHY 678

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E  ++        +++++    +  + + ++ +  G   I+IGTH L    + +  L ++
Sbjct: 679 ETFRERFSGYPFNIQVLSRFRTRKEQNETIKGVRQGTVDIVIGTHRLLSQDLVFKDLGML 738

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 739 IVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 798

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  ++   V E ++  ++ G + Y++  +++  +E     +    N+L     + +
Sbjct: 799 QTYVVEHSQT-LVREAIEREMARGGQVYYLYNRVQGIQE-----MAAEINALVPG--AKV 850

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 851 GVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQ 910

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR   I+     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 911 LRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLSIRGAGNL 970

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEI 658
           LG +Q G         +L+  +L  
Sbjct: 971 LGAEQHGFI--ASVGFDLYSQMLAE 993


>gi|325676609|ref|ZP_08156287.1| transcription-repair coupling factor [Rhodococcus equi ATCC 33707]
 gi|325552787|gb|EGD22471.1| transcription-repair coupling factor [Rhodococcus equi ATCC 33707]
          Length = 1225

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 138/472 (29%), Positives = 234/472 (49%), Gaps = 17/472 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +AG++  L   +Q     G     +    +++     F+ T  Q 
Sbjct: 603  DWQNTKRKARKAVREIAGELVQLYAARQAA--PGHAFGPDTPWQKEMEDAFAFTETHDQL 660

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 661  TVIDEVKADMEKPVPMDRVVIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHL 720

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +   N  + V  ++     A  ++ + ++A G+  I++GTH L Q  +++  L LV
Sbjct: 721  QTFSERMANFPVKVRGLSRFTDAAESKEIIAQLADGEIDIVVGTHRLLQTGVRWKDLGLV 780

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 781  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPI 840

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L    + +++  ++    ++  R              + +
Sbjct: 841  LTYVGAYAD-KQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKRIR-------EMVPEARV 892

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++   E  +  F      +L+ TT+IE G+D+ +A+ +I+E A+  GL+QLHQ
Sbjct: 893  VVAHGQMNEETLEKTVQGFWEREFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQ 952

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    D   G  +A +DL+ R  G +
Sbjct: 953  LRGRVGRSRERGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNV 1012

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG +QSG         +L+  L+  A +  + +    P  T    + +RI L
Sbjct: 1013 LGAEQSGH--VAGVGFDLYVRLVGEAVEAYRAVADGRPVTTEPEVKEVRIDL 1062


>gi|229083372|ref|ZP_04215723.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44]
 gi|228699937|gb|EEL52571.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44]
          Length = 1176

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 136/448 (30%), Positives = 233/448 (52%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   ++IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDVVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PGLIREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPE--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF +G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNEGELESVMLSFLDGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|229131061|ref|ZP_04259974.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST196]
 gi|229165042|ref|ZP_04292838.1| Transcription-repair-coupling factor [Bacillus cereus AH621]
 gi|228618427|gb|EEK75456.1| Transcription-repair-coupling factor [Bacillus cereus AH621]
 gi|228652398|gb|EEL08322.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST196]
          Length = 1176

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 231/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+     P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESLFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|163938061|ref|YP_001642945.1| transcription-repair coupling factor [Bacillus weihenstephanensis
            KBAB4]
 gi|163860258|gb|ABY41317.1| transcription-repair coupling factor [Bacillus weihenstephanensis
            KBAB4]
          Length = 1176

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 231/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+     P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESLFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|229021662|ref|ZP_04178248.1| Transcription-repair-coupling factor [Bacillus cereus AH1272]
 gi|228739637|gb|EEL90047.1| Transcription-repair-coupling factor [Bacillus cereus AH1272]
          Length = 1010

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 231/448 (51%), Gaps = 17/448 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 406 DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 463

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 464 RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 523

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 524 ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 583

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 584 IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 643

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 644 QTYVVEYN-PALMREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPD--ARV 695

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 696 TYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 755

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 756 LRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 815

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARK 661
           LG +Q G    +     L+  +L+ A +
Sbjct: 816 LGAEQHGFIDSVGFD--LYSQMLKDAIE 841


>gi|325107412|ref|YP_004268480.1| transcription-repair coupling factor [Planctomyces brasiliensis DSM
           5305]
 gi|324967680|gb|ADY58458.1| transcription-repair coupling factor [Planctomyces brasiliensis DSM
           5305]
          Length = 1114

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 137/457 (29%), Positives = 238/457 (52%), Gaps = 15/457 (3%)

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            PR +K    +   +++     +      ++ ++   + + GI    +    ++  +  P
Sbjct: 512 FPRLSKIGSNSWGQKKKKVSQAVADMAADMIKLQATREAKKGIAYPGDSHWYEEFEQAFP 571

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q +AI  I +DM ++  M R++ GDVG GKT VA+ A   A+++G QA ++ P 
Sbjct: 572 YEETPDQATAIDSIREDMMRERPMDRLICGDVGYGKTEVAMRAAFRAIDSGKQAAVLVPT 631

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +LA+QHY             +E+++    +  ++  LE +  G   +++GTH +    I
Sbjct: 632 TVLAEQHYRSFCARMAEFPYNIEMLSRFRSKKEQKAILEGLEAGTIDLVVGTHRIVSPDI 691

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++  L LVI+DE+ RFGV+ +  L +      +L ++ATPIPRTL ++ LG  DIS +  
Sbjct: 692 KFKDLGLVIIDEEQRFGVKAKEMLKRLRLEVDILTLSATPIPRTLHMSLLGIRDISNLQT 751

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P GR+ I+T I   +  + +   +   L+   + Y++  ++ + +E       E+   +
Sbjct: 752 PPRGRQAIETRICRWD-PELIRHAIVRELNRNGQVYFVHNRVYDIEELT-----EKLQQI 805

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                +   I+HG+MS+ + E  M +F  G   +L+ATT+IE G+D+ +A+ + I  A+ 
Sbjct: 806 VPE--AKFGIVHGQMSESELEKQMVAFVRGKTDVLMATTIIESGLDIPNANTMFIHEADR 863

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDL 625
           +GLA +HQLRGRVGR +  + C L+      LS  S  RL  ++   +   GF IA  DL
Sbjct: 864 YGLADMHQLRGRVGRFKHRAYCYLVVEEGKVLSTTSTRRLKAIEEYSELGAGFKIAMRDL 923

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           + R  G ILG +QSG     +   EL+  LLE A ++
Sbjct: 924 EIRGAGNILGTEQSGHIS--LVGYELYCQLLENAVRE 958


>gi|284040349|ref|YP_003390279.1| transcription-repair coupling factor [Spirosoma linguale DSM 74]
 gi|283819642|gb|ADB41480.1| transcription-repair coupling factor [Spirosoma linguale DSM 74]
          Length = 1126

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 130/461 (28%), Positives = 228/461 (49%), Gaps = 18/461 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW           + +A ++  L  +++     G   + +  +  ++  +  +  T  Q 
Sbjct: 520 EWEQKKSRIRKQVKDIARELIALYAKRRTA--PGYAYSRDSFLQAELESSFLYEDTPDQA 577

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A  D+  DM + + M R++ GDVG GKT +A+ A   AV    Q  ++ P  ILA QH+
Sbjct: 578 KATNDVKDDMERPHPMDRLVCGDVGFGKTEIAIRAAFKAVTDNKQVAVLVPTTILAMQHF 637

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +   +   +  + +E I         ++ L+ ++ G+  I+IGTH +    I++  L L+
Sbjct: 638 KTFSERMADFPVKIEYINRFRTAGQIKEILKGVSSGEIGILIGTHRIVNKDIKFKDLGLL 697

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ +FGV+ + +L +      VL +TATPIPRTL  + +G  D+S I   P  R+P+
Sbjct: 698 VIDEEQKFGVKTKDRLKEMRVEVDVLTLTATPIPRTLHFSLMGARDLSVIATPPPNRQPV 757

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            T +   N    + + +   +  G + +++  ++ + +      +            + I
Sbjct: 758 TTEVHAFNE-AIIRDAVSSEVRRGGQVFFVHNRVNDIESIGNLIM-------RLVPEARI 809

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+M     E +M  F  G   +LI+T +IE G+D+ +A+ I+I NA +FGL+ LHQ
Sbjct: 810 GVAHGQMDGERLERIMTRFIEGDYDVLISTNIIESGLDIPNANTILINNAHYFGLSDLHQ 869

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           +RGRVGR    + C LL  PP  L+ ++  RL  L++  D   GF IA  DL  R  G +
Sbjct: 870 MRGRVGRSNRKAFCYLLTPPPSVLTADARKRLQTLEDFSDLGEGFKIAMRDLDIRGAGNL 929

Query: 634 LGIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           LG +QSG      F +    L +++ E+   + K +    P
Sbjct: 930 LGAEQSGFVNDLGFEMYHKVLDEAVQELRENEFKDLFETKP 970


>gi|306992381|gb|ADN19307.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 444

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 162/449 (36%), Positives = 261/449 (58%), Gaps = 8/449 (1%)

Query: 119 EGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  A
Sbjct: 1   IGEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNA 60

Query: 179 L-SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           L   +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q
Sbjct: 61  LKDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQ 117

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R+
Sbjct: 118 MALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRL 175

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           +QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G
Sbjct: 176 VQGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSG 235

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
           ++  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K
Sbjct: 236 SISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKK 295

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E    
Sbjct: 296 GENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMK 355

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMD 535
            + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+
Sbjct: 356 EVKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVME 415

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIII 564
            F N    +L++TTVIEVG++V +A+++I
Sbjct: 416 EFVNREIDILVSTTVIEVGVNVPNATVMI 444


>gi|300934101|ref|ZP_07149357.1| transcription-repair coupling factor [Corynebacterium resistens DSM
            45100]
          Length = 1255

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 144/473 (30%), Positives = 239/473 (50%), Gaps = 18/473 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +AG++  L   +Q     G     +    +++    P++ T+ Q 
Sbjct: 637  DWKNTKRKARGAVRQIAGELVQLYATRQAA--PGYAFGADTPWQREMEEAFPYTETEDQF 694

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ +  DM +   M R++ GDVG GKT VA+ A   AV++G Q  ++ P  +LAQQH 
Sbjct: 695  NAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQHL 754

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  Q+    +  ++     A  R+ ++ +A+G   I+IGTH L Q  IQ+  L LV
Sbjct: 755  NTFTERMQDFPTTIRELSRFTSPAESREVIKAMANGDVDIVIGTHRLLQTGIQWKNLGLV 814

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 815  IVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPQDRHPV 874

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +        V   ++  L    + +++  +++  +             L     + +
Sbjct: 875  LTYVGQQED-KHVAAAIRRELLRDGQVFYVHNRVKTIE-----RAAADLRRLVPE--ARV 926

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS+   E+ +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQ
Sbjct: 927  VVAHGQMSEEQLETTVKGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQ 986

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P   L++ SY RL+ +    D   G  +A +DL+ R  G +
Sbjct: 987  LRGRVGRSHERGYAYFLYPPGEVLTETSYDRLTTIAQNNDLGAGMAVAMKDLEMRGAGNV 1046

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT-QDPDLTSVRGQSIRILL 685
            LG +QSG         +L+  L+  A +  + +   +  D T    + IRI L
Sbjct: 1047 LGAEQSGHI--AGVGFDLYVRLVGEAVEAFRAMADGKVVDGTEEEKKEIRIDL 1097


>gi|312144318|ref|YP_003995764.1| transcription-repair coupling factor [Halanaerobium sp.
            'sapolanicus']
 gi|311904969|gb|ADQ15410.1| transcription-repair coupling factor [Halanaerobium sp.
            'sapolanicus']
          Length = 1164

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 143/438 (32%), Positives = 224/438 (51%), Gaps = 15/438 (3%)

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            I LL +  + +   G     +    ++     PF  T  Q+ AIK++  DM  +  M R+
Sbjct: 586  IGLLELYAERETLKGYKFPEDDLWQKEFEDAFPFHETPDQQKAIKEVKSDMESEQPMDRL 645

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            L GDVG GKT VA+ A   A   G Q  ++ P  ILAQQH+   +   ++  I + +++ 
Sbjct: 646  LCGDVGYGKTEVAIRAAFKAALDGKQTAVLVPTTILAQQHFNTFEDRIEDFPIRISMLSR 705

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
               +A +RK L+ +  G+  I+IGTH L    + +  L L+I+DE+ RFGV  + KL   
Sbjct: 706  FKTKAEQRKTLKELIKGEVDIVIGTHRLLSKDVIFDDLGLLIIDEEQRFGVTHKEKLKDI 765

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                 VL +TATPIPRTL +  +G  D+S I   P  R PI+T I   N  + +   ++ 
Sbjct: 766  KRNVDVLTLTATPIPRTLHMALVGVRDMSLIETPPENRYPIRTFIKEKNH-ELIAGAVRR 824

Query: 478  VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
             L+   + Y++  ++E+ ++   +              + IA+ HG+M +   E +M +F
Sbjct: 825  ELAREGQIYFVHNRVEDIEKIAGKLQ-------KIVPEAKIAVAHGQMKEKRLEKIMYNF 877

Query: 538  KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             +    +L+ TT+IE G+D+ + + III +A+  GL+QL+QLRGRVGR   I+   LLY 
Sbjct: 878  YHHKFDILVCTTIIETGLDIPNVNTIIINHADKMGLSQLYQLRGRVGRTNRIAYAYLLYK 937

Query: 598  PP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
                L++ +  RL  +K       GF IA  DL+ R  G +LG +QSG          L+
Sbjct: 938  RDRILAEVAEKRLEAIKEFSSLGSGFKIAMRDLEIRGAGNLLGPEQSGHI--AAVGFSLY 995

Query: 653  DSLLEIARKDAKHILTQD 670
              LLE   +D K     D
Sbjct: 996  TKLLEGTIEDLKGEKKDD 1013


>gi|86140950|ref|ZP_01059509.1| transcription-repair coupling factor [Leeuwenhoekiella blandensis
           MED217]
 gi|85832892|gb|EAQ51341.1| transcription-repair coupling factor [Leeuwenhoekiella blandensis
           MED217]
          Length = 1127

 Score =  353 bits (905), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 134/435 (30%), Positives = 227/435 (52%), Gaps = 17/435 (3%)

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
             +  L  +++ +   G     +  +  ++  +  +  T  Q SA + +  DM     M 
Sbjct: 524 FNLIKLYAKRRLE--KGFAFGPDTYLQNELEASFIYEDTPDQSSATEAVKADMESPRPMD 581

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++ GDVG GKT VA+ A   AV+ G Q  ++ P  ILA QH++   +  ++  + V+ +
Sbjct: 582 RLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHHKTFSERLKDLPVTVDYL 641

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
                   +R+ LER+ +G+  IIIGTH L   ++++  L L+IVDE+ +FGV  + KL 
Sbjct: 642 NRFRTAKEKRETLERLENGRVDIIIGTHQLTNKNVKFKDLGLLIVDEEQKFGVAVKDKLK 701

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   L +TATPIPRTL  + +   D+S IT  P  R PI+T II ++  + + + +
Sbjct: 702 TIKENVDTLTLTATPIPRTLQFSLMAARDLSTITTPPPNRYPIETHIIRLSE-ETIRDAI 760

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              +  G + ++I  +++  KE            L     + +AI HG+M     E +M 
Sbjct: 761 SYEIQRGGQVFFIHNRLQNIKEVAG-----MIQRLVPD--AKVAIGHGQMDGKKLEELML 813

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F +G   +L++TT+IE G+DV +A+ I I NA +FGL+ LHQ+RGRVGR  + + C  +
Sbjct: 814 QFMDGAFDVLVSTTIIESGLDVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFI 873

Query: 596 YHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
             P   ++ ++  R++ L+       GF IA +DL+ R  G++LG +QSG    +     
Sbjct: 874 TPPLSAMTDDARKRITALEQFSSLGSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFD-- 931

Query: 651 LHDSLLEIARKDAKH 665
            +  +L  A ++ K 
Sbjct: 932 TYQKILNEAIEELKE 946


>gi|228476811|ref|ZP_04061459.1| transcription-repair coupling factor [Streptococcus salivarius
           SK126]
 gi|228251548|gb|EEK10685.1| transcription-repair coupling factor [Streptococcus salivarius
           SK126]
          Length = 1168

 Score =  353 bits (905), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 235/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +    +    +  ++ 
Sbjct: 557 KLNDGRFQKTKQKVSKQVEDIADDLLKLYA--ERSQLKGFAFSPDDDNQKDFEDDFAYAE 614

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV  G Q  I+ P  +L
Sbjct: 615 TEDQLRSIKEIKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVL 674

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A QHY   K+  +N  + V+ ++    +  + + +E +A G+  IIIGTH L    +++ 
Sbjct: 675 AHQHYLNFKERFENHAVEVDELSRFRSKKEQNETIENLAKGRIDIIIGTHRLLSKDVKFS 734

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 735 DLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSIIETAPT 794

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + +++  ++E           ++ + LHE 
Sbjct: 795 NRYPVQTYVMETN-PGLIREAILREMDRGGQIFYVYNRVETID--------QKVSELHEL 845

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + I  +HG+MS++  E+ +  F NG   +L+ATT+IE GID+ + + + IENA+H G
Sbjct: 846 VPEARIGFVHGQMSEVMLENTLLDFLNGDYDVLVATTIIETGIDISNVNTLFIENADHMG 905

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 906 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLDAIKGFTELGSGFKIAMRDLSI 965

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 966 RGAGNILGASQSGFID--SVGFEMYSQLLEEA 995


>gi|172040264|ref|YP_001799978.1| transcription-repair coupling factor [Corynebacterium urealyticum DSM
            7109]
 gi|171851568|emb|CAQ04544.1| transcription-repair coupling factor [Corynebacterium urealyticum DSM
            7109]
          Length = 1249

 Score =  353 bits (905), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 144/473 (30%), Positives = 241/473 (50%), Gaps = 18/473 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +AG++  L  ++Q     G     +    +++    PF+ T+ Q 
Sbjct: 631  DWKNTKRKARKAVREIAGELVQLYAQRQAA--PGYAFAPDSPWQREMEEAFPFTETEDQF 688

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ +  DM +   M R++ GDVG GKT VA+ A   AV++G Q  ++ P  +LAQQH 
Sbjct: 689  NAIEAVKSDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQHM 748

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +  +   Q+    +  ++     A  ++ L+ +A G   I++GTH L Q  + +  L L+
Sbjct: 749  KTFRDRMQDFPTRIAELSRFTTPAQSKEILKGLAEGTIDIVVGTHRLLQTGVTWKNLGLI 808

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 809  IVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPQDRHPV 868

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +        V   ++  L    + ++I  +++  +        E   SL     + +
Sbjct: 869  LTYVGAQED-KHVAAAIRRELLRDGQVFYIHNRVKSIE-----KAAEHIRSLVPE--ARV 920

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS+   E+ ++ F N    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQ
Sbjct: 921  VVAHGQMSEEQLETTVEGFWNREFDILVCTTIVETGLDISNANTLIVENAHHMGLSQLHQ 980

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E +    LY     L++ SY RLS +    +   G  +A +DL+ R  G +
Sbjct: 981  LRGRVGRSRERAYAYFLYPKGEVLTETSYDRLSTIAQNNELGAGMAVAMKDLEMRGAGNV 1040

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP-DLTSVRGQSIRILL 685
            LG +QSG         +L+  L+  A +  + +    P D      + IRI L
Sbjct: 1041 LGAEQSGHI--AGVGFDLYVRLVGEAVEAFRAMADGKPVDGREEEKKEIRIDL 1091


>gi|312138702|ref|YP_004006038.1| transcription repair coupling factor mfd [Rhodococcus equi 103S]
 gi|311888041|emb|CBH47353.1| transcription repair coupling factor Mfd [Rhodococcus equi 103S]
          Length = 1228

 Score =  353 bits (905), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 138/472 (29%), Positives = 234/472 (49%), Gaps = 17/472 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +AG++  L   +Q     G     +    +++     F+ T  Q 
Sbjct: 606  DWQNTKRKARKAVREIAGELVQLYAARQAA--PGHAFGPDTPWQKEMEDAFAFTETHDQL 663

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 664  TVIDEVKADMEKPVPMDRVVIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHL 723

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +   N  + V  ++     A  ++ + ++A G+  I++GTH L Q  +++  L LV
Sbjct: 724  QTFSERMANFPVKVRGLSRFTDAAESKEIIAQLADGEVDIVVGTHRLLQTGVRWKDLGLV 783

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 784  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPI 843

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L    + +++  ++    ++  R              + +
Sbjct: 844  LTYVGAYAD-KQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKRIR-------EMVPEARV 895

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++   E  +  F      +L+ TT+IE G+D+ +A+ +I+E A+  GL+QLHQ
Sbjct: 896  VVAHGQMNEETLEKTVQGFWEREFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQ 955

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    D   G  +A +DL+ R  G +
Sbjct: 956  LRGRVGRSRERGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNV 1015

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG +QSG         +L+  L+  A +  + +    P  T    + +RI L
Sbjct: 1016 LGAEQSGH--VAGVGFDLYVRLVGEAVEAYRAVADGRPVTTEPEVKEVRIDL 1065


>gi|298244980|ref|ZP_06968786.1| transcription-repair coupling factor [Ktedonobacter racemifer DSM
            44963]
 gi|297552461|gb|EFH86326.1| transcription-repair coupling factor [Ktedonobacter racemifer DSM
            44963]
          Length = 1169

 Score =  353 bits (905), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 150/483 (31%), Positives = 245/483 (50%), Gaps = 19/483 (3%)

Query: 188  WIEKDLLQKK-SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
            +I  D L +   F  + ++   +    K    EWT          + +A ++  L   ++
Sbjct: 546  YIPTDQLDRVTRFIGMGDSVPALS---KLGTTEWTRAKSRVKESVQDVARELLKLYSARE 602

Query: 247  FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
                     + E    Q++    P+  T  Q  AI+++  DM +   M R++ GDVG GK
Sbjct: 603  AAPGYAFSPDSEQPWLQELEDAFPYEETPDQARAIEEVKADMERPKAMDRLVCGDVGYGK 662

Query: 307  TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
            T VAL A   +V    Q  ++ P  ILA QHY   K+  +   + VE+++    +  +++
Sbjct: 663  TEVALRAAFKSVLDQRQVAVLVPTTILALQHYNTFKERLKAYPVRVELLSRFRSEKEQKQ 722

Query: 367  ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             LE +A G+  IIIGTH L Q  + ++ L L+IVDE+ RFGV  + +L Q      VL M
Sbjct: 723  VLEDLAMGKVDIIIGTHRLLQKDVVFFHLGLLIVDEEQRFGVMHKERLKQLRNEVDVLTM 782

Query: 427  TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
            TATPIPRTL ++ +   D+S I   P  R PI+T I   +  + + E +   +  G + +
Sbjct: 783  TATPIPRTLHMSLVNLRDMSVIETPPQERLPIRTTIREYDD-ELIREAILREIDRGGQVF 841

Query: 487  WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            ++  +++       + + ++   L     + I + HG+M++   E VM +F NG   +LI
Sbjct: 842  FVHNRVQ-----GIQMIAQKLQKLVPE--ARITVGHGQMNEDMLEKVMLNFTNGEFDVLI 894

Query: 547  ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNS 604
            +TT+IE G+D+ +A+ II+ NA +FGL+QL+QLRGRVGRG   +     Y  +  L+   
Sbjct: 895  STTIIENGLDIPNANTIIVNNAAYFGLSQLYQLRGRVGRGTHQAYAHFFYSKNARLTPIQ 954

Query: 605  YTRLSVL---KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
              RL  +        GF IA +DL+ R  G +LG +QSG    +     L+  LL  A +
Sbjct: 955  EKRLRAIFEATELGAGFRIAMKDLEIRGAGNLLGGEQSGFMNTIGFD--LYCKLLAEAIQ 1012

Query: 662  DAK 664
            + +
Sbjct: 1013 EIQ 1015


>gi|86606417|ref|YP_475180.1| transcription-repair coupling factor [Synechococcus sp. JA-3-3Ab]
 gi|86554959|gb|ABC99917.1| transcription-repair coupling factor [Synechococcus sp. JA-3-3Ab]
          Length = 1156

 Score =  353 bits (905), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 144/451 (31%), Positives = 236/451 (52%), Gaps = 19/451 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++     + +A  +  L  ++  ++        +    Q+   + P+  T  Q  
Sbjct: 556 WEKTKQKVKKSLKKVAFDLLQLYAKRAEQEG--YAFPPDSPWQQEFEESFPYPLTPDQIR 613

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A+++I +DM     M R+L GDVG GKT VA+ A+  AV AG Q  ++AP  IL QQHY 
Sbjct: 614 AVQEIKRDMESPRPMDRLLCGDVGFGKTEVAIRAIFKAVTAGKQVALLAPTTILTQQHYH 673

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            +K+      I V ++        +++ L R+  G+  +I+GTH L    +Q+  L L++
Sbjct: 674 TLKERFAPYPIQVGLLNRFRTPEEKKEILARLKSGELDVIVGTHQLLGKDVQFRDLGLLV 733

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV Q+ K+    T   VL +TATPIPRTL +   G  ++S I   P  R+PIK
Sbjct: 734 IDEEQRFGVNQKEKIKLLKTQVDVLTLTATPIPRTLYMALSGLREMSLIQTPPPSRRPIK 793

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSI 518
           T + P N  + +   ++  L  G + +++  +IE  +        E    L E    + I
Sbjct: 794 THLSPYN-PEVIRTAIRQELDRGGQVFYVVNRIEGIE--------ETSAKLREWVPGARI 844

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           AI HG+M + + E+ M +F NG   +L+ TT+IE G+D+   + I+IENA+ FGLAQL+Q
Sbjct: 845 AIAHGQMPEGELEATMLAFNNGEIDILVCTTIIESGLDIPRVNTILIENAQEFGLAQLYQ 904

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR    +   L Y     L++ +  RL  ++       G+ +A  D++ R  G +
Sbjct: 905 LRGRVGRAGIQAHAWLFYREDGILTEEARKRLQAIQEFTQLGSGYQLALRDMEIRGIGNL 964

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG +QSG  +      +L+  +L+ A ++ +
Sbjct: 965 LGTQQSG--QLNAVGFDLYLEMLQEAIREIR 993


>gi|229015456|ref|ZP_04172457.1| Transcription-repair-coupling factor [Bacillus cereus AH1273]
 gi|228745840|gb|EEL95841.1| Transcription-repair-coupling factor [Bacillus cereus AH1273]
          Length = 1176

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 231/448 (51%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A  +  L   ++     G     +    Q+   + P+  T+ Q 
Sbjct: 572  DWKKVKTKVEKSVQDIADDLIKLYAEREA--SKGYAYTPDTAEQQEFESSFPYQETEDQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM +   M R+L GDVG GKT VA+ A   A+    Q  I+ P  ILAQQHY
Sbjct: 630  RSIDEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E I++  Q+  I + +++    +  + + ++ +  G   I+IGTH +    + Y  L L+
Sbjct: 690  ETIRERFQDYPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 750  IIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L+ G + Y++  ++E+ +        +  + L     + +
Sbjct: 810  QTYVVEYN-PALMREAIERELARGGQIYFLYNRVEDIE-----RKADEISMLVPD--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++ + ESVM SF  G   +L++TT+IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 862  TYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     L+  +L+ A +
Sbjct: 982  LGAEQHGFIDSVGFD--LYSQMLKDAIE 1007


>gi|227485004|ref|ZP_03915320.1| transcription-repair coupling factor [Anaerococcus lactolyticus ATCC
            51172]
 gi|227237001|gb|EEI87016.1| transcription-repair coupling factor [Anaerococcus lactolyticus ATCC
            51172]
          Length = 1162

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 133/452 (29%), Positives = 235/452 (51%), Gaps = 17/452 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
              +W    +      + +A  +  L  ++  +   G   + +     +   + P+  T S
Sbjct: 566  SLQWQKSKQRAKKAVDEIADDLVKLYAKRAKE--KGHAFSKDTTWQVEFENSFPYDETFS 623

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            Q  +I++I  DM  +N M R+L GDVG GKT VAL A   A+  G Q   + P  ILA Q
Sbjct: 624  QLRSIEEIKADMESENPMDRLLCGDVGYGKTEVALRAAFKAIMDGYQVAFLVPTTILANQ 683

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            HY  + +  ++  I   +++    +A   K L+ I  G+  I++GTH L  D +++ KL 
Sbjct: 684  HYHTMVERFKDFPITCAMLSRFNTKAKDDKILKDIKSGKIDIVVGTHRLLSDDVKFNKLG 743

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+I+DE+ RFGV+ + K  +   +  VL ++ATPIPRTL ++  G  D+S + + P  R 
Sbjct: 744  LLIIDEEQRFGVKHKEKFKKFKASIDVLTLSATPIPRTLQMSLSGIRDLSTLDDPPEERL 803

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            P+ T ++  +    + + +   ++   + Y++  ++ + ++   +        L     +
Sbjct: 804  PVNTYVLEFDS-GIIRDAILKEINRNGQVYFVYNRVNDIEKLFLK-----IKDLVPE--A 855

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            SI I+HG+MS    E++M  F +G   +L+ATT+IE G+D+ + + I+I +++  GL+QL
Sbjct: 856  SIEIVHGQMSPRQIENIMMDFIDGKIDILLATTIIETGMDIKNVNTIVIYDSDLMGLSQL 915

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            +QL+GR+GRG   S     Y     L++    RL  +++  D   G+ IA +DL+ R  G
Sbjct: 916  YQLKGRIGRGYRSSYAYFTYRSGKILTEIGEKRLKSIRDFSDFGSGYKIAMKDLELRGAG 975

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
             +LG  QSG  + +     L+   L+ A + A
Sbjct: 976  NLLGESQSGHVEAVGYD--LYVKFLQEAVEKA 1005


>gi|312865767|ref|ZP_07725989.1| transcription-repair coupling factor [Streptococcus downei F0415]
 gi|311098642|gb|EFQ56864.1| transcription-repair coupling factor [Streptococcus downei F0415]
          Length = 1169

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 144/453 (31%), Positives = 229/453 (50%), Gaps = 17/453 (3%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +    ++   +  +  
Sbjct: 558 KLNDGRFQKAKQKVSKQVEDIADDLLKLYA--ERSQLKGFAFSADDDDQREFEEDFAYVE 615

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +IK++  DM     M R+L GDVG GKT VA+     AV    Q  ++ P  +L
Sbjct: 616 TDDQLRSIKEVKADMESDKPMDRLLVGDVGFGKTEVAMRGAFKAVNDNKQVAVLVPTTVL 675

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  +N  + V I++    +  +   L  ++ GQ  IIIGTH L    +++ 
Sbjct: 676 AQQHYNNFKERFENYAVQVGILSRFQTKKEQTDTLAALSKGQIDIIIGTHRLLSKDVEFL 735

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 736 DLGLIVIDEEQRFGVKHKEKLKELKKKSDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 795

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G +A+++  ++E                L   
Sbjct: 796 NRYPVQTYVLETN-PGMIREAIIREIDRGGQAFYVYNRVETIDRKAM-----ELQELVPE 849

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             ++I ++HG+MS+I  E+ +  F +G   +L+ATT+IE GID+ + + + +ENA+  GL
Sbjct: 850 --ANIGVVHGQMSEIQLENTLFDFLDGVYDVLVATTIIETGIDMPNVNTLFVENADQMGL 907

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQR 628
           + L+QLRGRVGR   I+   L+Y P   LS+ S  RL  +K       GF IA  DL  R
Sbjct: 908 STLYQLRGRVGRSNRIAYAYLMYQPDKVLSEASEKRLDAIKGFTELGSGFKIAMRDLSIR 967

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
             G ILG  QSG         EL+  +L+ A +
Sbjct: 968 GAGNILGASQSGFID--SVGFELYSQMLQEAIQ 998


>gi|298492665|ref|YP_003722842.1| transcription-repair coupling factor ['Nostoc azollae' 0708]
 gi|298234583|gb|ADI65719.1| transcription-repair coupling factor ['Nostoc azollae' 0708]
          Length = 1166

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 146/449 (32%), Positives = 236/449 (52%), Gaps = 18/449 (4%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
             +  + R A  +L    + L   R Q +         +    +++  + P+  T  Q  A
Sbjct: 570  NTKNKVRKAIKKLAVDLLKLYAARSQQQG---FAYPADMPWQEEMEDSFPYQATTDQLKA 626

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            ++D+ +DM  +  M R++ GDVG GKT VA+ A+  AV AG Q  ++AP  IL QQHY  
Sbjct: 627  VQDVKRDMESERPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVAVLAPTTILTQQHYHT 686

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            IK+      + V ++        +R   +R+A G+  I++GTH L    +Q+  L L+++
Sbjct: 687  IKERFSPYPVNVGLLNRFRSAEEKRNIQKRLATGELDIVVGTHQLLGKGVQFRDLGLLVI 746

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+ RFGV Q+ K+    T   VL ++ATPIPRTL ++  G  ++S IT  P  R+PI+T
Sbjct: 747  DEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSLITTPPPTRRPIQT 806

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             + P+N  + V   ++  L  G + +++ P++E  +E+         N          AI
Sbjct: 807  HLAPLN-PEIVRSAIRQELDRGGQVFYVVPRVEGIEET-------TANLREMIPGGRFAI 858

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+M + + ES M +F N    +L+ TT+IE G+D+   + I+IE+A  FGLAQL+QLR
Sbjct: 859  AHGQMEESELESTMLTFGNNDADILVCTTIIESGLDIPRVNTILIEDAHRFGLAQLYQLR 918

Query: 581  GRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
            GRVGR    +   L YH    LS  +  RL  ++       G+ +A  D++ R  G +LG
Sbjct: 919  GRVGRAGIQAHAWLFYHKQRELSDAARLRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLG 978

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             +QSG    +     L+  +LE A ++ +
Sbjct: 979  AEQSGQMDAIGFD--LYMEMLEEAIREIR 1005


>gi|154707070|ref|YP_001424606.1| transcription-repair coupling factor [Coxiella burnetii Dugway
            5J108-111]
 gi|154356356|gb|ABS77818.1| transcription-repair coupling factor [Coxiella burnetii Dugway
            5J108-111]
          Length = 1157

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 158/493 (32%), Positives = 243/493 (49%), Gaps = 20/493 (4%)

Query: 199  FPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
              S     +  H P +K    +W     +   +   +A ++  +  R+Q     G   ++
Sbjct: 542  LISRYAGADASHAPLQKLGSKQWEKIKEKTQKHIRDVAAELLDIYSRRQAA--TGFTFSI 599

Query: 258  EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
              K      +  PF  T  Q +AI D++ DMS K  M R++ GDVG GKT VA+ A   A
Sbjct: 600  PEKEYSLFRQAFPFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIA 659

Query: 318  VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
            V+   Q  ++ P  +LA+QH+   +    +  + +  I+    Q  R++  + +A G+  
Sbjct: 660  VQNNKQVAVLVPTTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKID 719

Query: 378  IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            IIIGTH L    I++  L L+IVDE+HRFGV Q+ ++        +L +TATPIPRTL +
Sbjct: 720  IIIGTHKLLSKDIRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNM 779

Query: 438  TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +  G  D+S IT  PA R  +KT +   + +  + E +      G + Y++   +     
Sbjct: 780  SLSGIRDLSLITTPPAKRLSVKTFVHDYSHV-LIREAILRENLRGGQVYFLHNDVATLAA 838

Query: 498  SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                   E+  ++     + +AI HG+M + D E VM  F +    LL+ TT+IE GID+
Sbjct: 839  -----TAEKLRTIIPE--ARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDI 891

Query: 558  VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE 615
              A+ III  A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RLS +   +
Sbjct: 892  PTANTIIINRADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADAEKRLSAISQLD 951

Query: 616  D---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            D   GF +A  DL+ R  GE+LG++QSG    +     L   LLE A    K    ++P 
Sbjct: 952  DLGVGFNLATHDLEIRGAGELLGVEQSGQIHDIGFSLYL--ELLEEAVSALKA--GREPQ 1007

Query: 673  LTSVRGQSIRILL 685
                   +  I L
Sbjct: 1008 FEKPLHAASEIDL 1020


>gi|320102612|ref|YP_004178203.1| transcription-repair coupling factor [Isosphaera pallida ATCC
           43644]
 gi|319749894|gb|ADV61654.1| transcription-repair coupling factor [Isosphaera pallida ATCC
           43644]
          Length = 1111

 Score =  352 bits (904), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 230/448 (51%), Gaps = 16/448 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    +        LA ++  L  ++Q +  I +P  V+  + ++   + P+  T  Q +
Sbjct: 518 WEKRKKRVADAVRDLAAELIDLQAQRQARPGIALP-AVDSHLMREFAASFPYEETPDQLA 576

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+ I +D  Q   M R++ GDVG GKT VA+ A   AV+AG Q  ++ P  +L +QH  
Sbjct: 577 AIEAIREDQIQPRPMDRLVCGDVGFGKTEVAMRAAFRAVDAGKQVAVLVPTTVLCEQHTR 636

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++      +++E I     +   R  LER A G+  I+IGTH + Q  +++  L LVI
Sbjct: 637 SFRERMAEYPVVIESINRFRTKKQIRDVLERTAQGKVDILIGTHRIVQKDVRFKDLGLVI 696

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+ +  L    T   VL ++ATPIPRTL ++ LG  DIS +   P GRK I+
Sbjct: 697 IDEEQRFGVEDKEWLKSLRTTVDVLTLSATPIPRTLHMSLLGIRDISNLETPPPGRKAIE 756

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T I   +    + + +   L+   + Y++  ++ +        + +R   +     + I 
Sbjct: 757 TRICRFDE-AIIRQAIHRELNRNGQVYFVHNRVHDLDA-----IADRLRGIVPE--ARIV 808

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG+M     E  M +F      +L+ATT+IE G+D+ +A+ I I  A+  GLA LHQL
Sbjct: 809 TAHGQMPGDQLEKAMLAFVRHQADILVATTIIESGLDIPNANTIFINEADRHGLADLHQL 868

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LL H    ++  +  RL  ++   +   GF IA  DL+ R  G IL
Sbjct: 869 RGRVGRSRNRAYAYLLLHESRAVTPEAARRLKAIEEFTELGAGFKIALRDLEIRGAGNIL 928

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           G +QSG  +      EL+ SLLE A ++
Sbjct: 929 GAEQSGHIE--AVGYELYCSLLETAVRE 954


>gi|323340106|ref|ZP_08080371.1| transcription-repair coupling factor [Lactobacillus ruminis ATCC
            25644]
 gi|323092483|gb|EFZ35090.1| transcription-repair coupling factor [Lactobacillus ruminis ATCC
            25644]
          Length = 1179

 Score =  352 bits (904), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 145/453 (32%), Positives = 241/453 (53%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  +  E +A ++  L  R++ +   G     +    ++     P++ T  Q 
Sbjct: 570  EWEKTKRKVASKLEDIADELVELYSRRESE--KGHAFPKDDSYQKEFEDAFPYTETPDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + K+I  DM ++  M R+L GDVG GKT VAL A   AVE G Q   +AP  +L QQHY
Sbjct: 628  RSAKEIKLDMEKEKPMDRLLIGDVGYGKTEVALRAAFKAVEDGKQVAFIAPTTLLVQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +    +   + + +++        ++ L ++ +G+  II+GTH L    +++  L L+
Sbjct: 688  ETMLSRFEGFPVEIGVLSRFSTPRQVKETLLKLKNGEIDIIVGTHRLLSKDVKFADLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + KL +  T+  VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 748  IIDEEQRFGVKHKEKLKELKTSVDVLTLTATPIPRTLNMSMLGVRDLSVIETAPLNRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T  +  N  D V   ++  +S G + +++  ++      +  +VVE  N++     + I
Sbjct: 808  QTYAMEQN-YDVVAAGIRREMSRGGQVFYLHNRV-----HDIETVVETLNTIVPE--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A +HG+MS+   E ++  F  G   +L+ TT+IE G+D+ + + + +E+A+  GLAQL+Q
Sbjct: 860  AYVHGQMSETQMEKILADFIAGEYDVLVTTTIIETGVDIPNVNTLFVEDADRMGLAQLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y P   L+++   RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSNRVAYAYFMYQPDKVLTEDGEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNM 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G  + +     L+  +L  A    + I
Sbjct: 980  LGKQQHGFIESVGYD--LYTKMLNEAVAKKRGI 1010


>gi|187928984|ref|YP_001899471.1| transcription-repair coupling factor [Ralstonia pickettii 12J]
 gi|187725874|gb|ACD27039.1| transcription-repair coupling factor [Ralstonia pickettii 12J]
          Length = 1143

 Score =  352 bits (904), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 157/478 (32%), Positives = 233/478 (48%), Gaps = 19/478 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +W    R+        A ++  L  R+  ++    P+  E         +  F 
Sbjct: 544  HSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRALRQGFAFPLTPED--YATFAESFGFE 601

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  I+AP  +
Sbjct: 602  ETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTL 661

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QHY+ +     +  + +  I+    +     A+E I  G   I+IGTH L    +++
Sbjct: 662  LAEQHYQTLVDRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVKF 721

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P
Sbjct: 722  DRLGLVIIDEEHRFGVRQKETLKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAP 781

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  IKT  +       + E +   L  G + Y++  ++E  +     +   +   L  
Sbjct: 782  QKRLAIKTF-LRREEDGVLREAILRELKRGGQVYFLHNEVETIE-----NKRAKLEELIP 835

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FG
Sbjct: 836  E--ARVVVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFG 893

Query: 573  LAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL H    L+K +  RL  ++  E+   GF +A  DL+ 
Sbjct: 894  LAQLHQLRGRVGRSHHQAYAYLLVHDVDGLTKQAQRRLEAIQQMEELGAGFYLAMHDLEI 953

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            R  GE+LG KQSG    +  Q  L+  +L  A K  K    ++PDL +    +  I L
Sbjct: 954  RGAGEVLGDKQSGEISEIGFQ--LYTDMLNQAVKSLKA--GKEPDLMAPLAATTEINL 1007


>gi|307154808|ref|YP_003890192.1| transcription-repair coupling factor [Cyanothece sp. PCC 7822]
 gi|306985036|gb|ADN16917.1| transcription-repair coupling factor [Cyanothece sp. PCC 7822]
          Length = 1169

 Score =  352 bits (904), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 151/513 (29%), Positives = 260/513 (50%), Gaps = 22/513 (4%)

Query: 198  SFPSIAEAFNIIHNPRKAKDFE---WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            S  S++      ++P +        W    ++     + LA  +  L  ++  ++     
Sbjct: 547  SLDSLSRYRQTGNHPPELHRMAGKAWEQTKQKVRKSVKKLAVDLINLYAKRAQQEG--FS 604

Query: 255  INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
               +    Q++  + P+ PT  Q  A++++ +D+     M R++ GDVG GKT VA+ A+
Sbjct: 605  FPTDSPWQQELEDSFPYQPTPDQLKAVQEVKRDLESDRPMDRLVCGDVGFGKTEVAVRAI 664

Query: 315  AAAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
              AV +G  Q   +AP  IL QQHY  +K+      I + ++      +  +  L+R++ 
Sbjct: 665  FKAVTSGNKQVAFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTPSENKDILQRLST 724

Query: 374  GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            G+  I++GTH L  + I++  L L+++DE+ RFGV Q+ K+    T   VL +TATPIPR
Sbjct: 725  GELDIVVGTHQLLSNKIKFKDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLTATPIPR 784

Query: 434  TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            TL ++  G  ++S IT  P  R+PIKT + P N  D +   ++  L  G + +++ P++E
Sbjct: 785  TLYMSLSGVREMSLITTPPPSRRPIKTHLSPYNS-DVIRTAIRNELDRGGQIFYVVPRVE 843

Query: 494  EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              +E                 T+ IAI HG+M   + E+ M +F NG   +L+ TT+IE 
Sbjct: 844  GIEEV-------AAEIRQMVPTARIAIAHGQMDVSELETTMLAFNNGEADVLVCTTIIES 896

Query: 554  GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL 611
            G+D+   + II+E+A+ FGL+QL+QLRGRVGR    +   L+Y     L++ +  RL  L
Sbjct: 897  GLDIPRVNTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLVYPHKAALTETARQRLRAL 956

Query: 612  KNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
            +       G+ +A  D++ R  G +LG +QSG  +   F +    L D++ EI  ++   
Sbjct: 957  QEFTQLGSGYQLATRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLQDAIREIQGQEIPK 1016

Query: 666  ILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
            +     DL          +  + Q  +A++ I 
Sbjct: 1017 VEDTQIDLKLTAFIPADYISDINQKMDAYRTIA 1049


>gi|89892935|ref|YP_516422.1| hypothetical protein DSY0189 [Desulfitobacterium hafniense Y51]
 gi|89332383|dbj|BAE81978.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1178

 Score =  352 bits (904), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 136/451 (30%), Positives = 227/451 (50%), Gaps = 17/451 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +  +  + +A  +  L    Q +   G   + +    Q+     P+  T  Q 
Sbjct: 577  EWKKVKAKAKSAIKEMAFDLVKLYA--QREATKGYAFSPDNVWQQEFEEKFPYQETPDQM 634

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I ++ QDM ++  M R+L GDVG GKT VAL A   AV    Q  ++ P  ILAQQH+
Sbjct: 635  QCIVEVKQDMMRQRPMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVAVLVPTTILAQQHF 694

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++      + +++++       ++  L+ +  G   I++GTH L  DSI++  L L+
Sbjct: 695  NTFQERFMGYPVSIQMLSRFRSAKEQKLILQGLKEGSIDIVVGTHKLVSDSIKFKDLGLL 754

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + KL        VL ++ATPIPRTL ++ +G  D+S I   P  R P+
Sbjct: 755  IVDEEQRFGVAHKEKLKTLKANVDVLTLSATPIPRTLHMSLVGVRDLSIIETPPEDRFPV 814

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T +    R D V E ++  +  G + +++  ++E+ ++          + L     +  
Sbjct: 815  QTYVAEF-RPDVVREAIRREIQRGGQVFFVHNRVEDMEQVVHF-----LSQLVPE--ARY 866

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+MS+ + E  M +F      +L+ TT+IE G+D+ + + +II+ A+  GL QL+Q
Sbjct: 867  GIAHGQMSEKELEQEMLAFLEHESDVLVCTTIIETGLDMPNVNTLIIDEADRLGLGQLYQ 926

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +    LY P   L++ +  RL+ ++       G  IA  DL+ R  G +
Sbjct: 927  LRGRVGRSNRRAYSYFLYKPQKVLTEVAEKRLAAIREFTEFGSGLKIAMRDLEIRGAGNL 986

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            +G +Q G         EL+  +L+ A ++ K
Sbjct: 987  IGAQQHGH--LAALGFELYSQMLKEAVQELK 1015


>gi|227832736|ref|YP_002834443.1| transcription-repair coupling factor [Corynebacterium aurimucosum
            ATCC 700975]
 gi|262182774|ref|ZP_06042195.1| transcription-repair coupling factor [Corynebacterium aurimucosum
            ATCC 700975]
 gi|227453752|gb|ACP32505.1| transcription-repair coupling factor [Corynebacterium aurimucosum
            ATCC 700975]
          Length = 1212

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 149/505 (29%), Positives = 250/505 (49%), Gaps = 24/505 (4%)

Query: 188  WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            W+  D L   S  +  EA  +     K    +W +  ++  A    +AG++  L  ++Q 
Sbjct: 560  WVPMDSLDLLSKYTGGEAPTL----SKMGGSDWKNTKKKARAAVREIAGELVELYAKRQA 615

Query: 248  KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
                      +     ++  N PF  T+ Q  AI  + +DM     M R++ GDVG GKT
Sbjct: 616  APGHQ--FGPDTPWQAEMEDNFPFVETEDQMLAIDAVKEDMESTVPMDRVVVGDVGYGKT 673

Query: 308  LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             VA+ A   AV+ G Q  ++ P  +LAQQH +  ++  Q   + +E+++        ++ 
Sbjct: 674  EVAVRAAFKAVQDGKQVAVLVPTTLLAQQHADTFRERMQGFPVDIEVLSRFTSAKESKEI 733

Query: 368  LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            L  +A G   I+IGTH L Q  +Q+  L L++VDE+ RFGV+ +  +     +  VL M+
Sbjct: 734  LAGLADGSVDIVIGTHRLLQTGVQWKNLGLIVVDEEQRFGVEHKEHIKALKASVDVLTMS 793

Query: 428  ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            ATPIPRTL ++  G  ++S I   P  R P+ T +       +V   ++  L    + ++
Sbjct: 794  ATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYED-KQVAAAIRRELLRDGQVFF 852

Query: 488  ICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            I  ++ + +        ++   L +    + I + HG+M++   E  +  F +    +L+
Sbjct: 853  IHNKVADIE--------KKARELRDLVPEARIVVAHGQMNEDVLERTVQGFWDREFDVLV 904

Query: 547  ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNS 604
             TT++E G+D+ +A+ +I+ENA H GL+QLHQLRGRVGR  E      LY     L++ S
Sbjct: 905  CTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTETS 964

Query: 605  YTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            Y RL+ +    D   G  +A +DL+ R  G +LG +QSG         +L+  L+  A +
Sbjct: 965  YDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHI--AGVGFDLYVRLVGEAVE 1022

Query: 662  DAKHILTQD-PDLTSVRGQSIRILL 685
              K +   + P +T    + IRI L
Sbjct: 1023 TFKALARGETPVVTDEGPKEIRIDL 1047


>gi|219666201|ref|YP_002456636.1| transcription-repair coupling factor [Desulfitobacterium hafniense
            DCB-2]
 gi|219536461|gb|ACL18200.1| transcription-repair coupling factor [Desulfitobacterium hafniense
            DCB-2]
          Length = 1197

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 136/451 (30%), Positives = 227/451 (50%), Gaps = 17/451 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +  +  + +A  +  L    Q +   G   + +    Q+     P+  T  Q 
Sbjct: 596  EWKKVKAKAKSAIKEMAFDLVKLYA--QREATKGYAFSPDNVWQQEFEEKFPYQETPDQM 653

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I ++ QDM ++  M R+L GDVG GKT VAL A   AV    Q  ++ P  ILAQQH+
Sbjct: 654  QCIVEVKQDMMRQRPMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVAVLVPTTILAQQHF 713

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++      + +++++       ++  L+ +  G   I++GTH L  DSI++  L L+
Sbjct: 714  NTFQERFMGYPVSIQMLSRFRSAKEQKLILQGLKEGSIDIVVGTHKLVSDSIKFKDLGLL 773

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + KL        VL ++ATPIPRTL ++ +G  D+S I   P  R P+
Sbjct: 774  IVDEEQRFGVAHKEKLKTLKANVDVLTLSATPIPRTLHMSLVGVRDLSIIETPPEDRFPV 833

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T +    R D V E ++  +  G + +++  ++E+ ++          + L     +  
Sbjct: 834  QTYVAEF-RPDVVREAIRREIQRGGQVFFVHNRVEDMEQVVHF-----LSQLVPE--ARY 885

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+MS+ + E  M +F      +L+ TT+IE G+D+ + + +II+ A+  GL QL+Q
Sbjct: 886  GIAHGQMSEKELEQEMLAFLEHESDVLVCTTIIETGLDMPNVNTLIIDEADRLGLGQLYQ 945

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +    LY P   L++ +  RL+ ++       G  IA  DL+ R  G +
Sbjct: 946  LRGRVGRSNRRAYSYFLYKPQKVLTEVAEKRLAAIREFTEFGSGLKIAMRDLEIRGAGNL 1005

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            +G +Q G         EL+  +L+ A ++ K
Sbjct: 1006 IGAQQHGH--LAALGFELYSQMLKEAVQELK 1034


>gi|268318293|ref|YP_003292012.1| transcription-repair coupling factor [Rhodothermus marinus DSM
           4252]
 gi|262335827|gb|ACY49624.1| transcription-repair coupling factor [Rhodothermus marinus DSM
           4252]
          Length = 1112

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 144/461 (31%), Positives = 232/461 (50%), Gaps = 18/461 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W           + +A  +  L  ++  K   G   + +    +++     +  T  Q 
Sbjct: 504 QWEKVKARTKKRVKDIARDLIRLYAKR--KASRGFAFSPDTVWQREMEAAFEYEDTPDQA 561

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +A + + +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  ILA QHY
Sbjct: 562 AAAEAVKRDMEQPVPMDRLVCGDVGFGKTEIAIRAAFKAVQDGKQVAVLVPTTILADQHY 621

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E   +      + +E+++     A +R  L  +A G+  IIIGTH L    +Q+  L L+
Sbjct: 622 ETFTRRLAPYPVRIEVLSRFRSPARQRAVLRDLAAGKVDIIIGTHRLLSKDVQFKDLGLL 681

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + +L Q       L +TATPIPRTL    +G  D+S I+  P  R+PI
Sbjct: 682 IIDEEQRFGVAAKERLRQLRVEVDTLTLTATPIPRTLQFALMGARDLSIISTPPPNRQPI 741

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            T I   +    + + ++  +S G + ++I  +++   E     +  R  ++       I
Sbjct: 742 VTEIHTFDET-LIRDAIRYEISRGGQVFFIHNRVQSIYE-----MAARLQAIVPDV--RI 793

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+ HG+M   + E VM  F      +L++T +IE G+D+ +A+ III +AE FGLA LHQ
Sbjct: 794 AVAHGQMKPRELERVMHDFMARKYDVLVSTNIIESGLDIPNANTIIINHAEQFGLADLHQ 853

Query: 579 LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR +  + C LL      L++ +  RL  ++       GF IA  DL  R  G +
Sbjct: 854 LRGRVGRSDRKAFCYLLVPSIHGLTREARQRLQAIEEFSELGSGFSIAMRDLDIRGAGNL 913

Query: 634 LGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDP 671
           LG +QSG  +   F   Q  L +++ E+  ++   +L   P
Sbjct: 914 LGAEQSGFIEEIGFETYQQILDEAIRELREEEFADVLGAPP 954


>gi|302339041|ref|YP_003804247.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM
           11293]
 gi|301636226|gb|ADK81653.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM
           11293]
          Length = 1128

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 143/455 (31%), Positives = 242/455 (53%), Gaps = 18/455 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W S         E LA ++  L  ++  K+  G     +     +     P+  T  Q  
Sbjct: 537 WESRKARVRKSVEDLADRLIKLYAKR--KEARGFSFPEDTDWQVEFEAEFPYQETADQLR 594

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            I+++  DM     M R++ GDVG GKT VA+ A   AV AG Q   +AP  ILA+QHYE
Sbjct: 595 CIEEVKADMESDRPMDRLICGDVGYGKTEVAMRAAFKAVVAGKQVAFLAPTTILAEQHYE 654

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +   + +++++  +P+  + + L  +  G   ++IGTH + Q  + +  L L++
Sbjct: 655 NFCERFKRYPVKIDMVSRFVPKKKQHQILSALTEGSVDLLIGTHRILQKDVLFKNLGLIV 714

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+ + +L +  T+   L ++ATPIPRTL ++ L   DIS +T  P  R+PI+
Sbjct: 715 IDEEQRFGVKDKERLKELRTSVDSLSLSATPIPRTLHMSLLKIRDISLLTTAPNNRRPIE 774

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T I   +  + V + ++  +  G + +++  ++E       R  +ER   + E F   + 
Sbjct: 775 TTIQEFDE-ELVAKAIRREMDRGGQVFFLHNRVETL--PQVRRFLERL--IPEVF---VE 826

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+MS    E +M  F +G+ ++L+ATT+IE GID+ + + III+ A+ +G++QL+QL
Sbjct: 827 IAHGQMSSSQLEDIMHRFIHGSFQVLLATTIIENGIDIPNVNTIIIDRADMYGISQLYQL 886

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR +  S   L Y     LS+ +  RL ++        GF IA +D++ R  G +L
Sbjct: 887 RGRVGRSDRSSYAYLFYPEQRSLSEIAMKRLQIISDYTELGSGFKIAMKDMEVRGAGNLL 946

Query: 635 GIKQSGMP---KFLIAQPELHDSLLEIARKDAKHI 666
           G +Q G      F +    L +++ E++R D + I
Sbjct: 947 GRQQHGEILSVGFDMYLRILDEAVAEMSRGDGEEI 981


>gi|310639514|ref|YP_003944272.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2]
 gi|309244464|gb|ADO54031.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2]
          Length = 1175

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 135/445 (30%), Positives = 228/445 (51%), Gaps = 17/445 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT    +  +  + +A  +  L   +Q     G     +    Q+     P+  T+ Q 
Sbjct: 561 EWTRVKSKVRSSVQDIADDLIKLYAERQSA--PGFAFEKDSPEQQEFEDMFPYDETRDQV 618

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I +DM Q   M R+L GDVG GKT VA+ A   +   G Q  ++ P  ILAQQHY
Sbjct: 619 RAIEEIKKDMEQSRPMDRLLCGDVGYGKTEVAIRAAFKSAIEGKQVAVLVPTTILAQQHY 678

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E  ++        +++++    +  + +  + +  G   I+IGTH L    + +  L L+
Sbjct: 679 ETFRERFSGYPFNIQVLSRFRSRKEQNETTKGVRQGTVDIVIGTHRLLSQDLVFKDLGLL 738

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 739 IVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 798

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  ++   V E ++  ++ G + Y++  +++  +E     +    N+L     + +
Sbjct: 799 QTYVVEHSQT-LVREAIEREMARGGQVYYLYNRVQGIQE-----MAAEINALVPD--AKV 850

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 851 GVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQ 910

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR   I+     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 911 LRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLSIRGAGNL 970

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEI 658
           LG +Q G         +L+  +L  
Sbjct: 971 LGAEQHGFI--ASVGFDLYSQMLAE 993


>gi|227873322|ref|ZP_03991584.1| transcription-repair coupling factor [Oribacterium sinus F0268]
 gi|227840837|gb|EEJ51205.1| transcription-repair coupling factor [Oribacterium sinus F0268]
          Length = 1138

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 138/446 (30%), Positives = 226/446 (50%), Gaps = 17/446 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW     +       +A ++  L  ++Q ++    P   +    ++     P+  T  Q 
Sbjct: 537 EWQKTKSKVKGAVREIAKELLALYAKRQEERG--YPFGKDTVWQREFEEAFPYEETGDQL 594

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI+   +DM  +  M R++ GDVG GKT +AL A   AV+   Q   + P  ILAQQ Y
Sbjct: 595 LAIEATKEDMESEKIMDRLVCGDVGYGKTEIALRAAFKAVQDSKQVAYLCPTTILAQQIY 654

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +  +   + V I++    Q    K LE++A G+  I++GTH L    + +  L L+
Sbjct: 655 NGFVERMKGFPVEVGILSRFQSQKEVHKTLEQLASGRIDILVGTHRLLSKDVHFKNLGLL 714

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ RFGVQ + ++        VL ++ATPIPRTL ++ +G  D+S + E P  R PI
Sbjct: 715 VVDEEQRFGVQHKERIKSLKENVDVLTLSATPIPRTLHMSLVGIRDLSILEEAPMDRLPI 774

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++       + E +   L    + Y++  +++  +++       R   L     + I
Sbjct: 775 QTYVMEEEE-GTIREAISRELRRNGQVYYVHNRVKSIEDTAL-----RLQKLLPE--ARI 826

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HG+M + + E +M SF  G   +L++TT+IE G+D+ +A+ +II++A+  GL+QL+Q
Sbjct: 827 AYAHGQMGEKELEEIMLSFIAGEIDVLVSTTIIETGLDIPNANTLIIQDADKMGLSQLYQ 886

Query: 579 LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           +RGRVGR    S   LLY     L++ S  RL  ++       G  IA  DL+ R  G +
Sbjct: 887 IRGRVGRSNRTSYAFLLYKKGKSLTEESEKRLKAIREFTELGSGIRIALRDLEIRGAGNV 946

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIA 659
           LG +Q G  +      EL+  LL  A
Sbjct: 947 LGAEQHGHME--AVGYELYTKLLRHA 970


>gi|113475354|ref|YP_721415.1| transcription-repair coupling factor [Trichodesmium erythraeum
            IMS101]
 gi|110166402|gb|ABG50942.1| transcription-repair coupling factor [Trichodesmium erythraeum
            IMS101]
          Length = 1180

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 152/492 (30%), Positives = 253/492 (51%), Gaps = 25/492 (5%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
            ++  + R +  +L    + L   R Q   + G     +    +++  + P+ PT  Q  A
Sbjct: 573  STKNKVRKSIKKLAVDLLKLYAQRAQ---QTGYSFPPDTPWQEEMEDSFPYQPTPDQLKA 629

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
             +D+ +DM  +  M R++ GDVG GKT VA+ A+  AV A  Q   +AP  +L QQHY  
Sbjct: 630  TQDVKRDMESERAMDRLVCGDVGFGKTEVAIRAIFKAVIAEKQVAFLAPTTVLTQQHYHT 689

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            +K+      I + ++        +++   R+A G+  II+GTH++   +IQ+ +L L++V
Sbjct: 690  LKERFAPYPIEIGLLNRFRTPNEKKEIQHRLATGELDIIVGTHSILSKTIQFRELGLLVV 749

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+ RFGV Q+ K+        VL +TATPIPRTL +   G  ++S IT  P  R+PIKT
Sbjct: 750  DEEQRFGVNQKEKIKALKAEVDVLTLTATPIPRTLYMALSGIREMSVITTPPPLRRPIKT 809

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIA 519
             + P + ++     ++  L+ G + +++ P+IE  +        E    L E    + I 
Sbjct: 810  HLAPYD-LETARTAIRQELNRGGQVFYVVPRIEGIE--------ELAGKLREMIPGARIN 860

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M   + ES+M +F  G   +L+ TT+IE G+D+   + I+IE+A+ FGL+QL+QL
Sbjct: 861  IGHGKMDAAELESIMLTFSAGEADILVCTTIIESGLDIPRVNTILIEDAQKFGLSQLYQL 920

Query: 580  RGRVGRGEEISSCILLYHP------PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
            RGRVGR    +   L Y         L+ ++  RL  ++       G+ +A  DL+ R  
Sbjct: 921  RGRVGRAGVQAHAWLFYPTTSSGGIALTDDAQKRLRAIQEFTQLGSGYHLAIRDLEIRGA 980

Query: 631  GEILGIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G+ILG +QSG      F +    L +++ EI  ++   +     DL+         +L L
Sbjct: 981  GDILGAEQSGQVNAIGFDLYTEMLEEAIREIKGQEIPQVDDTKIDLSLTAFIPADYILDL 1040

Query: 688  YQYNEAFQFIRA 699
             Q   A++ + A
Sbjct: 1041 DQKISAYRSVAA 1052


>gi|291545188|emb|CBL18297.1| transcription-repair coupling factor [Ruminococcus sp. 18P13]
          Length = 1156

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 135/457 (29%), Positives = 223/457 (48%), Gaps = 17/457 (3%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
            K    EW           + +A ++  L  +++  +        + +I  +     P+ 
Sbjct: 554 HKLSSVEWQKTRNNVKRAAKDMADELIALYAKREKAEG--FAFLPDDEIQAEFEERFPYV 611

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q   I DI  DM + + M R+L GDVG GKT VA+ A    V +G Q  I+ P  +
Sbjct: 612 ETDDQLQCIADIKADMQKPHPMDRLLCGDVGFGKTEVAMRAALKCVLSGKQCAILVPTTV 671

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QHY+   +  +   + VE+++       + + L +++ G+  I+IGTH L Q  + +
Sbjct: 672 LARQHYQTALRRFEQMPVNVELLSRARNPKQQAEILRKLSTGRIDILIGTHRLIQKDVIF 731

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             L L I+DE+ RFGV  + K  +      VL ++ATPIPRTL +   G  D+S I E P
Sbjct: 732 KDLGLAIIDEEQRFGVAHKEKFKESFAGVDVLTLSATPIPRTLNMAMSGIRDMSVIEEPP 791

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             R P+++ ++  +    V + L   L  G +AY++  ++E           +R   L  
Sbjct: 792 QDRYPVQSYVVEYSD-GVVAQALSRELKRGGQAYYLHNRVETIAA-----CADRLQRLLP 845

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + IA  HG+M++     +     +    +L+ TT+IE G+DV + + +IIE+A+  G
Sbjct: 846 D--ARIAYAHGQMTEEAMSDIWRQLVDHEIDILVCTTIIETGVDVPNVNTLIIEDADRLG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
           L+QL+QLRGRVGR    +     +     L++ +  RL+ ++       GF IA  DL+ 
Sbjct: 904 LSQLYQLRGRVGRSNRRAYAYFTFRREKVLTEVATKRLNAMREFTQFGSGFRIALRDLEI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           R  G IL  KQ G  + +     ++  LL  A  +AK
Sbjct: 964 RGAGSILSGKQHGNMEAVGYD--MYIRLLNEAIAEAK 998


>gi|212212451|ref|YP_002303387.1| transcription-repair coupling factor [Coxiella burnetii CbuG_Q212]
 gi|212010861|gb|ACJ18242.1| transcription-repair coupling factor [Coxiella burnetii CbuG_Q212]
          Length = 1157

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 158/493 (32%), Positives = 242/493 (49%), Gaps = 20/493 (4%)

Query: 199  FPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
              S     +  H P +K    +W     +   +   +A ++  +  R+Q        I  
Sbjct: 542  LISRYAGADASHAPLQKLGSKQWEKIKEKTQKHIRDVAAELLDIYSRRQAATGFTFSIPE 601

Query: 258  EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +G       +  PF  T  Q +AI D++ DMS K  M R++ GDVG GKT VA+ A   A
Sbjct: 602  KGYSL--FRQAFPFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIA 659

Query: 318  VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
            V+   Q  ++ P  +LA+QH+   +    +  + +  I+    Q  R++  + +A G+  
Sbjct: 660  VQNNKQVAVLVPTTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKID 719

Query: 378  IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            IIIGTH L    I++  L L+IVDE+HRFGV Q+ ++        +L +TATPIPRTL +
Sbjct: 720  IIIGTHKLLSKDIRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNM 779

Query: 438  TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +  G  D+S IT  PA R  +KT +   + +  + E +      G + Y++   +     
Sbjct: 780  SLSGIRDLSLITTPPAKRLSVKTFVHDYSPV-LIREAILRENLRGGQVYFLHNDVATLAA 838

Query: 498  SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                   E+  ++     + +AI HG+M + D E VM  F +    LL+ TT+IE GID+
Sbjct: 839  -----TAEKLRTIIPE--ARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDI 891

Query: 558  VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE 615
              A+ III  A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RLS +   +
Sbjct: 892  PTANTIIINRADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADAEKRLSAISQLD 951

Query: 616  D---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            D   GF +A  DL+ R  GE+LG++QSG    +     L   LLE A    K    ++P 
Sbjct: 952  DLGVGFNLATHDLEIRGAGELLGVEQSGQIHDIGFSLYL--ELLEEAVSALKA--GREPQ 1007

Query: 673  LTSVRGQSIRILL 685
                   +  I L
Sbjct: 1008 FEKPLHAASEIDL 1020


>gi|193213782|ref|YP_001994981.1| transcription-repair coupling factor [Chloroherpeton thalassium
           ATCC 35110]
 gi|193087259|gb|ACF12534.1| transcription-repair coupling factor [Chloroherpeton thalassium
           ATCC 35110]
          Length = 1110

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 140/493 (28%), Positives = 241/493 (48%), Gaps = 20/493 (4%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P  +K       A +      L      L+ +  + K   G     +    ++      F
Sbjct: 478 PTLSKLGSNKWQANKEKIKKRLKDIARNLIAIYAKRKMTKGFACKQDSVWQREFEAAFIF 537

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q SAI+ I  DM     M R++ GD G GKT VA+ A   AVE+G Q  ++ P  
Sbjct: 538 DETPDQMSAIESIKADMEAVAPMDRLICGDAGFGKTEVAMRAAFKAVESGKQVAVLVPTT 597

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA QH+   K   QN  + VE+++  +P+  ++  +  I  G+  I++GTH +    ++
Sbjct: 598 ILAHQHFNTFKLRFQNFPMRVEVLSRFVPKKSQKAVIAEIGEGKVDIVVGTHRIVSKDVK 657

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+I+DE+  FGV  + KL +   +   L+++ATPIPRTL  + +G  D+S I+  
Sbjct: 658 FTDLGLLIIDEEQHFGVAAKEKLREDFPSVDTLVLSATPIPRTLQFSMMGARDLSIISTP 717

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R+P++TVI   +  + + + +   +  G + +++  +I    E     + E    L 
Sbjct: 718 PKNRQPVETVIHEFD-AEMIKQAIGREIGRGGQVFFLHNRINSISE-----MYELVKKLF 771

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               + + + HG+M   + E+VM  F      +L++T ++  G+D+ +A+ +II  A+ F
Sbjct: 772 PR--ARVGVAHGQMPTKELEAVMLDFIQKELDVLVSTAIVGSGLDISNANTMIINRADMF 829

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLK 626
           GL+ L+QLRGRVGR ++ +   L   P   L +++  RL+V++       GF +A  DL 
Sbjct: 830 GLSDLYQLRGRVGRSDKKAYAYLFTPPLSTLKQDALQRLAVIEAYTELGSGFSVAMRDLD 889

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  G +LG +QSG    L     ++  +LE A  + K       +  ++  +S R+ L 
Sbjct: 890 IRGAGNLLGAEQSGFIFDLGFD--VYQKILEEAVSELKST-----EFQNIFAESERLKLQ 942

Query: 687 LYQYNEAFQFIRA 699
             +  E   F  A
Sbjct: 943 PKKPCEVIFFFDA 955


>gi|241663171|ref|YP_002981531.1| transcription-repair coupling factor [Ralstonia pickettii 12D]
 gi|240865198|gb|ACS62859.1| transcription-repair coupling factor [Ralstonia pickettii 12D]
          Length = 1143

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 157/478 (32%), Positives = 233/478 (48%), Gaps = 19/478 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +W    R+        A ++  L  R+  ++    P+  E         +  F 
Sbjct: 544  HSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRALRQGFAFPLTPED--YATFAESFGFE 601

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  I+AP  +
Sbjct: 602  ETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTL 661

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QHY+ +     +  + +  I+    +     A+E I  G   I+IGTH L    +++
Sbjct: 662  LAEQHYQTLVDRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVKF 721

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +L LVI+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P
Sbjct: 722  DRLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAP 781

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  IKT  +       + E +   L  G + Y++  ++E  +     +   +   L  
Sbjct: 782  QKRLAIKTF-LRREEDGVLREAILRELKRGGQVYFLHNEVETIE-----NKRAKLEELIP 835

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + + + HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  A+ FG
Sbjct: 836  E--ARVVVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFG 893

Query: 573  LAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL H    L+K +  RL  ++  E+   GF +A  DL+ 
Sbjct: 894  LAQLHQLRGRVGRSHHQAYAYLLVHDVDGLTKQAQRRLEAIQQMEELGAGFYLAMHDLEI 953

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            R  GE+LG KQSG    +  Q  L+  +L  A K  K    ++PDL +    +  I L
Sbjct: 954  RGAGEVLGDKQSGEITEIGFQ--LYTDMLNQAVKSLKA--GKEPDLMAPLAATTEINL 1007


>gi|153870816|ref|ZP_02000135.1| truncated transcription-repair coupling factor [Beggiatoa sp. PS]
 gi|152072718|gb|EDN69865.1| truncated transcription-repair coupling factor [Beggiatoa sp. PS]
          Length = 668

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 158/495 (31%), Positives = 249/495 (50%), Gaps = 20/495 (4%)

Query: 198 SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
            F S+    +  H P  +    +W    R+       +A ++  +  ++  ++     + 
Sbjct: 51  HFISLFTGMDPEHAPLHRLGSAQWEKAKRKAAKKATDVAAELLDIYAQRAARQGHQFQLE 110

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
                 Q   +  PF  T  Q+ AI+ ++ DM     M R++ GDVG GKT VA+ A   
Sbjct: 111 P--LEYQAFAQAFPFEETPDQQEAIQGVVNDMLSTQPMDRLVCGDVGFGKTEVAMRATYI 168

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AV  G Q  ++ P  +LAQQHY+  K    +  + VE ++    +  +   L+ +  GQ 
Sbjct: 169 AVMDGQQTAVLVPTTLLAQQHYQTFKDRFADLPVRVEQLSRFRSKKQQTDTLKAVTEGQV 228

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I+IGTH L QD++Q+ +L LVI+DE+HRFGV+Q+ K     T   +L +TATPIPR+L 
Sbjct: 229 DIVIGTHKLIQDNVQFKRLGLVIIDEEHRFGVKQKEKFKALRTEVDILTLTATPIPRSLN 288

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +      D+S I   P+GR  IKT I    +   +IE +   L  G + Y++  QIE   
Sbjct: 289 MALSHLRDLSIIASPPSGRLAIKTFIREW-QGPLIIEAILRELKRGGQVYFLHNQIETID 347

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           +     + +    L     + + I HG+M + + E VM  F +    +L+ TT+IE GID
Sbjct: 348 K-----IADEVQELVPE--ARVRIAHGKMRERELEQVMQDFYHRRFNVLVCTTIIETGID 400

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
           V  A+ +II  A+  GLAQL+QLRGRVGR    +   LL   P  ++K++  R+  +   
Sbjct: 401 VPTANTMIINRADKLGLAQLYQLRGRVGRSHHRAYAYLLIPHPKAMTKDAQKRIDAIGAM 460

Query: 615 ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           E+   GF++A  DL+ R  GE+LG +QSG  + +     L+  LLE A    K    +  
Sbjct: 461 EELGMGFMLATHDLEIRGAGELLGGEQSGHIQEIGYG--LYTELLEKAVNSLKS--GEPI 516

Query: 672 DLTSVRGQSIRILLY 686
           +L      S  + L+
Sbjct: 517 ELNQPLKNSTEVNLH 531


>gi|300691385|ref|YP_003752380.1| transcription-repair ATP-dependent coupling factor, helicase
            [Ralstonia solanacearum PSI07]
 gi|299078445|emb|CBJ51097.1| transcription-repair ATP-dependent coupling factor, helicase
            [Ralstonia solanacearum PSI07]
          Length = 1143

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 154/472 (32%), Positives = 232/472 (49%), Gaps = 19/472 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++    P+       +    +  F  T  Q 
Sbjct: 550  QWEKAKRRAAQQIRDTAAELLNLYARRALRQGFAFPLTPND--YEAFAESFGFDETPDQA 607

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QHY
Sbjct: 608  AAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHY 667

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +     +  + +  I+    +     A+E I  G   I+IGTH L    +++ +L LV
Sbjct: 668  QTLADRFADWPVRIAEISRFKNKKEIDAAVEAINAGTIDIVIGTHKLLSPDVKFDRLGLV 727

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 728  IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 787

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +   +  +L     + +
Sbjct: 788  KTFV-RREEDGVLREAILRELKRGGQVYFLHNEVETIE-----NKRAKLEALVPE--ARV 839

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  ++ FGLAQLHQ
Sbjct: 840  AVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRSDKFGLAQLHQ 899

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H    L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 900  LRGRVGRSHHQAYAYLLVHDADGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV 959

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG KQSG    +  Q  L+  +L  A K  K    ++PDL +    +  I L
Sbjct: 960  LGDKQSGEISEIGFQ--LYTDMLNQAVKSLKA--GKEPDLMAPLAATTEINL 1007


>gi|309389992|gb|ADO77872.1| transcription-repair coupling factor [Halanaerobium praevalens DSM
            2228]
          Length = 1160

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 227/459 (49%), Gaps = 15/459 (3%)

Query: 211  NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            NP+  K         +      +    + LL +  + +   G     +    ++   + P
Sbjct: 559  NPKLYKLGSSDWKKVKEKVQQSVEKMAVGLLELYAERETLTGYQFPKDDVWQKEFEDSFP 618

Query: 271  FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
            F  T  Q+ AI  +  DM     M R+L GDVG GKT VA+ A   A  A  Q  ++ P 
Sbjct: 619  FEETPDQKKAISALKSDMESIKPMDRLLCGDVGYGKTEVAIRAAFKAALASKQTAVLVPT 678

Query: 331  GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             ILAQQHY    +  +   + V I++     A +RK L+R+  G+  I+IGTH L    +
Sbjct: 679  TILAQQHYNTFSERIEEFPVRVGILSRFNTAAEQRKTLKRLIKGEIDILIGTHRLLSKDV 738

Query: 391  QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +  L L+I+DE+ RFGV  + KL        VL +TATPIPRTL +  +G  D+S I  
Sbjct: 739  IFADLGLLIIDEEQRFGVTHKEKLKDLKRNVDVLTLTATPIPRTLHMALVGVRDMSLIET 798

Query: 451  KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
             P  R PI+T I   N  + +   ++  L+   + Y++  ++++ +++  +        L
Sbjct: 799  PPENRYPIRTFIKEDNS-ELITSAIRRELARNGQIYFVHNRVKDIEKTAGK-----LQKL 852

Query: 511  HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + IA+ HG+M++   E +M  F      +L+ TT+IE G+D+ + + III +A+ 
Sbjct: 853  MPE--AKIAVAHGQMNEKRLEKIMYDFYQQKFDILVCTTIIETGLDIPNVNTIIINHADR 910

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDL 625
             GL+QL+QLRGRVGR   I+   LLY     L++ +  RL  +K       GF IA  DL
Sbjct: 911  MGLSQLYQLRGRVGRTNRIAYAYLLYEKDRILAEVAEKRLEAIKEFSSLGSGFKIAMRDL 970

Query: 626  KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            + R  G +LG +QSG          L+  LLE   ++ K
Sbjct: 971  EIRGAGNLLGPEQSGHI--AAVGFSLYTKLLEGTIEELK 1007


>gi|254468808|ref|ZP_05082214.1| transcription-repair coupling factor [beta proteobacterium KB13]
 gi|207087618|gb|EDZ64901.1| transcription-repair coupling factor [beta proteobacterium KB13]
          Length = 1120

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 154/493 (31%), Positives = 241/493 (48%), Gaps = 18/493 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
             K    +W    R+ L      A ++  L   ++ KK +   I  +    QK     PF 
Sbjct: 520  HKLGSGQWEKEKRKALKQVYDTAAELLNLYALREKKKGLVSKI--DFLEYQKFANEFPFE 577

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q  AI+ +++DM     M R++ GDVG GKT VA+ A   ++    Q +I+ P  +
Sbjct: 578  ETPDQMLAIESVIKDMESARPMDRLICGDVGFGKTEVAMRAAFISIMNNRQVIILVPTTL 637

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA QHY        +  + +E I+       + + LE++A+G+  I+IGTH L Q  I+ 
Sbjct: 638  LASQHYNNFVDRFSSFPVEIEEISRFKSNKQQNEVLEKLANGKVDIVIGTHRLLQKDIKI 697

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              + L+IVDE+HRFGV+Q+  L +  T    L +TATPIPRTL ++  G  D S I+  P
Sbjct: 698  DNIGLIIVDEEHRFGVRQKEMLKKFKTNTDFLALTATPIPRTLSMSLEGLRDFSIISTPP 757

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  IKT++   +    + E L    + G +AY++   +          + E+   +  
Sbjct: 758  QKRLSIKTMVKSFSE-GIIKEALTREFNRGGQAYFLHNDVSSIYA-----ISEKLTKIMP 811

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + +AI HG+M + + E VM  F      LL+ TT+IE GID+  ++ III NA+ FG
Sbjct: 812  D--AKVAIAHGQMKEKELERVMQDFHQQRFNLLLCTTIIETGIDIPTSNTIIINNADRFG 869

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
            L+QLHQLRGRVGR    +   LL      L+  +  RL  ++  ED   G+ +A  DL+ 
Sbjct: 870  LSQLHQLRGRVGRSHHQAFAYLLIDENRSLTSKAKKRLEAIQYLEDLGSGYFLAMHDLEI 929

Query: 628  RKEGEILGIKQSG---MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
            R  GEILG +QSG      F +    L+ ++  +   +   I     +   +   +  IL
Sbjct: 930  RGAGEILGDQQSGEIHEIGFSMYLKMLNRAVTHLKNNETLDINADYNENNDINIHAPAIL 989

Query: 685  LYLYQYNEAFQFI 697
               Y  +   + +
Sbjct: 990  TNQYCGDPNERLV 1002


>gi|306992379|gb|ADN19306.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 442

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 160/447 (35%), Positives = 259/447 (57%), Gaps = 8/447 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  KDYVQEVEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASII 563
           F N    +L++TTVIE G++V +A+++
Sbjct: 416 FVNREIDILVSTTVIEEGVNVPNATVM 442


>gi|319953407|ref|YP_004164674.1| transcription-repair coupling factor [Cellulophaga algicola DSM
           14237]
 gi|319422067|gb|ADV49176.1| transcription-repair coupling factor [Cellulophaga algicola DSM
           14237]
          Length = 1125

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 138/451 (30%), Positives = 229/451 (50%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +  +  + +A  +  +  +++  K        +G +  ++  +  +  T  Q  
Sbjct: 507 WKKVKEKAKSRVKKIAFDLIQIYAKRRTLKGFQYA--PDGYLQHELEASFIYEDTPDQSK 564

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +DI +DM  +  M R++ GDVG GKT VA+ A   AV  G Q  ++ P  ILA QH  
Sbjct: 565 ATEDIKRDMESERPMDRLICGDVGFGKTEVAIRAAFKAVANGKQVAVLVPTTILAFQHNR 624

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  ++  + V+ +        ++  LER+  G+  IIIGTH L   ++++  L L+I
Sbjct: 625 TFKERLKDMPVTVDYLNRFRTTKEKKDTLERLEAGKVDIIIGTHQLVNKNVKFKDLGLLI 684

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S I   P  R PI+
Sbjct: 685 VDEEQKFGVAVKDKLKSIKENVDVLTLTATPIPRTLQFSLMAARDLSVINTAPPNRYPIQ 744

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + +I  +  + + + +   +  G + ++I  ++E  KE            L     + I 
Sbjct: 745 SDVIRFSE-ETIRDAVSYEIQRGGQVFFIHNRVENIKEVAG-----LIQRLVPD--AKIG 796

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E +M +F NG   +L++TT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 797 IGHGQMEGKKLEILMLAFINGEFDVLVSTTIIESGLDVSNANTIFINNANNFGLSDLHQM 856

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   ++ ++  R+  L+       GF IA +DL+ R  G+IL
Sbjct: 857 RGRVGRSNKKAFCYFITPPYEVMTSDARKRIEALEQFTELGSGFNIAMKDLEIRGAGDIL 916

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG    +      +  +L  A ++ K 
Sbjct: 917 GGEQSGFINDIGFD--AYQKILAEAVEELKE 945


>gi|315640551|ref|ZP_07895659.1| transcription-repair coupling factor [Enterococcus italicus DSM
            15952]
 gi|315483755|gb|EFU74243.1| transcription-repair coupling factor [Enterococcus italicus DSM
            15952]
          Length = 1179

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 139/448 (31%), Positives = 237/448 (52%), Gaps = 17/448 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+     E +A  +  L  +++ +   G     +    ++     P+S T+ Q 
Sbjct: 568  EWTKTKRKVSGKIEDIADDLIQLYAQREAE--KGFAFGPDDGYQKEFEDAFPYSETEDQL 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I +DM ++  M R+L GDVG GKT VAL A   A+    Q  I+ P  ILAQQHY
Sbjct: 626  RSTSEIKKDMEKEKPMDRLLVGDVGFGKTEVALRAAFKAIRESKQVAILVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +    Q   + + I++    ++ +++ +E++  GQ  I++GTH L    I +  L L+
Sbjct: 686  ETMVDRFQGFPVNIGILSRFRTKSQQQETIEQLRRGQIDIVVGTHRLLSKDITFADLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + +L +  +   VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 746  VIDEEQRFGVKHKERLKELRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPI 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E +   ++ G + +++  +++  +       VE    L     + I
Sbjct: 806  QTYVMESN-PGAIREAILREMARGGQVFYLYNRVDTIE-----RKVEELQMLVPD--ARI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 858  GYAHGQMTEIQLENTLFDFIEGEYDILVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y P   L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSNRVAYAYFMYEPQKILTEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARK 661
            LG +Q G    +     ++  +L+ A +
Sbjct: 978  LGAQQHGFIDSVGFD--MYAQMLQEAVE 1003


>gi|320105780|ref|YP_004181370.1| transcription-repair coupling factor [Terriglobus saanensis SP1PR4]
 gi|319924301|gb|ADV81376.1| transcription-repair coupling factor [Terriglobus saanensis SP1PR4]
          Length = 1210

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 160/535 (29%), Positives = 260/535 (48%), Gaps = 31/535 (5%)

Query: 174  IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
            +I+E   +  +       DL+QK        A  +     K     W           + 
Sbjct: 559  MILEFAEQAKLYVPLTRLDLIQKYRTADTGPAPEL----NKMGGAAWAKTKARVKKAMQD 614

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
            +  ++  L  ++Q  +        +  + ++      F+ T  Q SAI DI +DM     
Sbjct: 615  MTAELLKLYAQRQSAEG--FVFAPDNNLQREFEDAFDFNETDDQLSAIADIKRDMESTQP 672

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R+L GDVG GKT VA+ A   AV+   Q  ++ P  +L+ QHY+  KK      + VE
Sbjct: 673  MDRLLCGDVGYGKTEVAMRAAFKAVQDSKQVAVLTPTTVLSFQHYQSFKKRFARFPVNVE 732

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            +I+       ++K LE +A G+  I+IGTH L    I +  L L++VDE+ RFGV+ + +
Sbjct: 733  MISRFRTAKEQKKILEDVADGKVDILIGTHRLLSKDIAFQDLGLLVVDEEQRFGVRHKER 792

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
            L Q   A  VL M+ATPIPRTL ++ LG  D+S I   P  R  I+T++   +    V  
Sbjct: 793  LKQMRAAIDVLAMSATPIPRTLHMSLLGLRDMSVIETPPKDRMAIQTIVAKFDE-KLVRT 851

Query: 474  RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
             +++ L    + Y++  ++E   +   +        L  H  + +   HG+M + + E  
Sbjct: 852  AIEMELERSGQIYFVHNRVETIYDLASQ-----IRELVPH--ARVITAHGQMGEGELEKA 904

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            M +F N    +L AT++IE G+D+  A+ III  A+  GL++L+QLRGRVGR    +   
Sbjct: 905  MLAFMNYEFDVLCATSIIENGLDIPRANTIIINRADRHGLSELYQLRGRVGRANRRAYAY 964

Query: 594  LLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            LL  P   L++ +  RL+ LK   D   GF IA  DL+ R  G +LG +QSG  + +   
Sbjct: 965  LLIPPDNELTEVARRRLAALKEFSDLGAGFKIAALDLELRGAGNMLGGEQSGHIEAI--G 1022

Query: 649  PELHDSLLEIAR-----KDAKHILTQDPDLTSVRGQSIRI-LLYLYQYNEAFQFI 697
             E++ ++L+ A      + A+  +    +L    G S+RI   Y+ + N+  +  
Sbjct: 1023 FEMYTTMLQEAVAKMKGESAEERVAVQLNL----GISLRIDADYIAEENQRLRMY 1073


>gi|300774874|ref|ZP_07084737.1| transcription-repair coupling factor [Chryseobacterium gleum ATCC
           35910]
 gi|300506689|gb|EFK37824.1| transcription-repair coupling factor [Chryseobacterium gleum ATCC
           35910]
          Length = 1122

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 143/473 (30%), Positives = 233/473 (49%), Gaps = 22/473 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W S  ++  A  + +A  +  L    Q K   G     +  +  ++  +  +  T  QE 
Sbjct: 508 WKSLKQKTKAKVKQIAFDLIKLYA--QRKTAKGFAYTPDSYLQNELEASFIYEDTPDQEK 565

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+ +DM     M R++ GDVG GKT VA+ A   A   G Q  ++ P  ILA QHY 
Sbjct: 566 ATIDVKRDMEADTVMDRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVLVPTTILAFQHYR 625

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  ++  + V  +        + + LE + +G+  IIIGTH L   S+++  L L+I
Sbjct: 626 SFKERLKDFPVNVAYVNRFRTAKQKSETLEALKNGKVDIIIGTHQLVSSSVKFKDLGLLI 685

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+H+FGV  + KL         L +TATPIPRTL  + +   D+S I   P  R+P++
Sbjct: 686 IDEEHKFGVSVKDKLKTLKNNVDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVE 745

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +I  N  + + + +   L    + Y+I  +IE  K+            L     + + 
Sbjct: 746 TQLIGFNE-ETLRDAVSYELQRDGQVYFINNRIENLKDIAG-----LIQRLVPD--ARVI 797

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG+M     E  +  F  G   +L++TT++E G+DV +A+ I I +A+ FG+A LHQ+
Sbjct: 798 TGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANTIFINDAQRFGMADLHQM 857

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    + C L+  P   ++ ++  RL  ++   D   GF IA +DL+ R  G++L
Sbjct: 858 RGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLL 917

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV-RGQSIRILLY 686
           G +QSG    +    E +  L+    ++A   L  D D  ++   +  R  L+
Sbjct: 918 GAEQSGFINEM--GFETYQKLM----QEALEELKDDADFENLFENEEDRQKLF 964


>gi|304405853|ref|ZP_07387511.1| transcription-repair coupling factor [Paenibacillus curdlanolyticus
           YK9]
 gi|304345096|gb|EFM10932.1| transcription-repair coupling factor [Paenibacillus curdlanolyticus
           YK9]
          Length = 1177

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 140/452 (30%), Positives = 228/452 (50%), Gaps = 20/452 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW     +  +  + +A ++  L   +Q     G     +    Q+     P+  T+ Q 
Sbjct: 560 EWARVKTKVRSSVKDIADELIKLYADRQA--SPGFAFGQDTPYQQEFEAMFPYDETRDQL 617

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI +I  DM     M R+L GDVG GKT VA+ A   A   G Q  I+ P  ILAQQH+
Sbjct: 618 RAIGEIKADMEMSRPMDRLLCGDVGYGKTEVAVRAAFKAAIEGKQVAILVPTTILAQQHF 677

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E  ++        V++++    +  + + ++ I  G   I+IGTH L    + +  L L+
Sbjct: 678 ETFRERFSGYPFNVQVLSRFRSRKEQNETMKGIKAGTVDIVIGTHRLLSQDVVFKDLGLL 737

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 738 IVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 797

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  +    V E ++  L+ G + Y++  +++         + ++  +L     + +
Sbjct: 798 QTYVLEYS-AALVRESVERELARGGQVYYLYNRVQ-----GIHQMADQIKALVPD--ARV 849

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+ HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 850 AVGHGQMSEQELEKTILDFLDGESDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQ 909

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR   I+     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 910 LRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLAIRGAGNL 969

Query: 634 LGIKQSGMP---KFLIAQPELHDSLLEIARKD 662
           LG +Q G      F +    L D +   ARK 
Sbjct: 970 LGAEQHGFIASVGFDLYSQMLADEV--AARKA 999


>gi|119505858|ref|ZP_01627923.1| transcription-repair coupling protein Mfd [marine gamma
            proteobacterium HTCC2080]
 gi|119458286|gb|EAW39396.1| transcription-repair coupling protein Mfd [marine gamma
            proteobacterium HTCC2080]
          Length = 1150

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 145/477 (30%), Positives = 236/477 (49%), Gaps = 21/477 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
              +W    R        +A Q+  +  R++ ++       ++    Q+     PF  T  
Sbjct: 550  SEQWEKARRRAREKANDVAAQLLEVYARREARQG--FQCELDETAWQRFSEEFPFEETPD 607

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            Q +AI+ +  DM     M R++ GDVG GKT VA+ A   A++   Q  I+ P  +LAQQ
Sbjct: 608  QSAAIEAVRADMCATKVMDRLVCGDVGFGKTEVAMRAAFIAIQNNKQVAILVPTTLLAQQ 667

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            HY   +    +  + VE+++     +      +R+A G   ++IGTH L Q +  +  L 
Sbjct: 668  HYNSFRDRFADWPVKVEVVSRFQSNSDITSVQKRVASGDVDLLIGTHKLLQSTFAFEDLG 727

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+++DE+HRFGV+Q+  +        +L MTATPIPRTL +   G  D+S I   PA R 
Sbjct: 728  LLVIDEEHRFGVKQKEAIKALRAQVDILTMTATPIPRTLNMALGGLRDLSIIATPPARRL 787

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             IKT +   + I  V E +      G + Y++  +++  +        E  + L E   +
Sbjct: 788  SIKTFVREHS-ISLVKEAILRETLRGGQVYYLHNEVKTIE--------ETASRLREMLPN 838

Query: 517  -SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             S+ + HG++ +   E VM  F +    +L+ +T+IE GID+ +A+ III+ A+ FGLAQ
Sbjct: 839  LSVGVGHGQLRETALEGVMTDFYHLRHHILVCSTIIETGIDIPNANTIIIDRADKFGLAQ 898

Query: 576  LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKE 630
            LHQLRGRVGR    +   LL  P   ++ ++  RL  ++       G+L+A  DL+ R  
Sbjct: 899  LHQLRGRVGRSHHQAYAYLLCPPRSTMTSDAEKRLEAIEAAGALGAGYLLATHDLEIRGA 958

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            GE+LG +QSG    +     L   +L  A +  K    + PD+         + L++
Sbjct: 959  GELLGDEQSGQIHSVGFGLYLD--MLNNAVRALKR--GEIPDVDGPLDSGTEVKLHI 1011


>gi|307544803|ref|YP_003897282.1| transcription-repair coupling factor [Halomonas elongata DSM 2581]
 gi|307216827|emb|CBV42097.1| K03723 transcription-repair coupling factor (superfamily II helicase)
            [Halomonas elongata DSM 2581]
          Length = 1148

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 153/516 (29%), Positives = 260/516 (50%), Gaps = 23/516 (4%)

Query: 178  ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAG 236
            AL        ++  D L      S     +    P  +    +W    ++        A 
Sbjct: 509  ALEYADGAKLYVPVDSL---HLISRYAGADDELAPLHRLGSEQWDKAKKKAAEKIRDTAA 565

Query: 237  QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            ++  +  R++ ++       +      +   + PF  T  Q  AI+ +L DM+    M R
Sbjct: 566  ELLDIYARREAREG--FACQMPDAEYARFAASFPFEETPDQRVAIQSVLADMTAPRPMDR 623

Query: 297  ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            ++ GDVG GKT VA+ A   AV +G Q V++ P  +LA+QHYE  +    +T + +E+++
Sbjct: 624  VVCGDVGFGKTEVAMRAAFLAVHSGRQVVVLVPTTLLARQHYENFRDRFADTAVNIELVS 683

Query: 357  GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                   +  A++RI  G+A I+IGTH L   S+++  + L+I+DE+HRFGV Q+ +L Q
Sbjct: 684  RFTSGQGQSAAMQRIEDGRADIVIGTHKLLSKSMRFANMGLLIIDEEHRFGVAQKERLKQ 743

Query: 417  KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                  +L +TATPIPRTL +   G  D+S I   PA R  +KT +   +    + E + 
Sbjct: 744  LRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQRDE-SVIKEAIL 802

Query: 477  VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              +  G + Y++  +++  +     +  E    L     + + + HG++ +   E VM  
Sbjct: 803  REILRGGQVYFLHNEVKTIE-----TAAETVRELVPD--ARVGVAHGQLPERSLERVMSD 855

Query: 537  FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            F +    +L+ +T+IE GIDV  A+ I+I+ A+ FGLAQLHQLRGRVGR    +   LL 
Sbjct: 856  FYHKRFNVLVCSTIIETGIDVPSANTIVIQRADKFGLAQLHQLRGRVGRSHHQAYAYLLT 915

Query: 597  HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
             PP  +++++  RL  +  +ED   GF +A  D++ R  GE+LG +QSG  + L     L
Sbjct: 916  PPPRAMTRDATKRLEAIAQSEDLGAGFTLASHDMEIRGAGELLGDEQSGQMEALGYS--L 973

Query: 652  HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            +  +L+ A K  +    + P++ +   + + + L L
Sbjct: 974  YMQMLDRAVKAIRD--GKTPNIEAPLDEGVEVSLNL 1007


>gi|239629010|ref|ZP_04672041.1| transcription-repair coupling factor [Clostridiales bacterium
            1_7_47_FAA]
 gi|239519156|gb|EEQ59022.1| transcription-repair coupling factor [Clostridiales bacterium
            1_7_47FAA]
          Length = 1186

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 143/464 (30%), Positives = 229/464 (49%), Gaps = 20/464 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW           + +A  +  L   +Q K   G     +    ++     P+  T  Q 
Sbjct: 585  EWGKTKTRVKGAVQEIAKDLVKLYAARQEK--AGFQYGHDTVWQREFEELFPYDETDDQM 642

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  +  DM  +  M R++ GDVG GKT VAL A   AV+   Q V + P  ILAQQHY
Sbjct: 643  DAIDAVKTDMESRRIMDRLICGDVGYGKTEVALRAAFKAVQDSKQVVYLVPTTILAQQHY 702

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  ++  + V++++     A +++ LE +  G   I+IGTH +    +Q+  L L+
Sbjct: 703  NTFVQRMKDFPVRVDMLSRFCTPARQKRTLEDLRKGMVDIVIGTHRVLSKDMQFKDLGLL 762

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q      VL +TATPIPRTL ++  G  D+S + E P  R PI
Sbjct: 763  IIDEEQRFGVAHKEKIKQLKENVDVLTLTATPIPRTLHMSLAGIRDMSVLEEPPVDRTPI 822

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + V E +   L+   + Y++  ++ +  E        R  +L     + +
Sbjct: 823  QTYVMEYNE-EMVREAINRELARNGQVYYVYNRVTDIDEVAN-----RIQALVPE--AVV 874

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M + + E +M  F NG   +L++TT+IE G+D+ +A+ +II +A+  GL+QL+Q
Sbjct: 875  TFAHGQMREHELERIMADFINGEIDVLVSTTIIETGLDIPNANTMIIHDADRMGLSQLYQ 934

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    S   L+Y     L + +  RL  ++       G  IA  DL+ R  G +
Sbjct: 935  LRGRVGRSNRTSYAFLMYRRDKLLKEEAEKRLQAIREFTELGSGIKIAMRDLEIRGAGNV 994

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            LG +Q G  + +     L+  +L  A      +  + PD  S  
Sbjct: 995  LGAEQHGHMEAVGYD--LYCKMLNEAV---LALKGEKPDEDSYE 1033


>gi|160939694|ref|ZP_02087042.1| hypothetical protein CLOBOL_04586 [Clostridium bolteae ATCC BAA-613]
 gi|158437485|gb|EDP15249.1| hypothetical protein CLOBOL_04586 [Clostridium bolteae ATCC BAA-613]
          Length = 1200

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 144/459 (31%), Positives = 231/459 (50%), Gaps = 20/459 (4%)

Query: 219  EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EW     R R A  E+    + L   R++   + G     +    ++     P+  T  Q
Sbjct: 601  EWNKTKTRVRGAVQEIARDLVKLYAARQE---KAGFQYGTDTVWQREFEELFPYDETDDQ 657

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              AI  + +DM  +  M R++ GDVG GKT VAL A   AV+   Q V + P  ILAQQH
Sbjct: 658  MDAIDAVKKDMESRRIMDRLICGDVGYGKTEVALRAAFKAVQDSKQVVYLVPTTILAQQH 717

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y    +  ++  + V++++     A +++ LE +  G   I+IGTH +    +Q+  L L
Sbjct: 718  YNTFVQRMKDFPVRVDMLSRFCTPARQKRTLEDLRKGMVDIVIGTHRVLSKDMQFKDLGL 777

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +I+DE+ RFGV  + K+        VL +TATPIPRTL ++  G  D+S + E P  R P
Sbjct: 778  LIIDEEQRFGVAHKEKIKHLKENVDVLTLTATPIPRTLHMSLAGIRDMSVLEEPPVDRTP 837

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            I+T ++  N  + V E +   L+   + Y++  ++ +  E        R  +L     + 
Sbjct: 838  IQTYVMEYNE-EMVREAINRELARNGQVYYVYNRVTDIDEVAG-----RVQALVPD--AV 889

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +   HG+M + + E +M  F NG   +L++TT+IE G+D+ +A+ +II +A+  GL+QL+
Sbjct: 890  VTFAHGQMREHELERIMADFINGEIDVLVSTTIIETGLDISNANTMIIHDADRMGLSQLY 949

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR    S   L+Y     L + +  RL  ++       G  IA  DL+ R  G 
Sbjct: 950  QLRGRVGRSNRTSYAFLMYKRDKLLREEAEKRLQAIREFTELGSGIKIAMRDLEIRGAGN 1009

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK-HILTQD 670
            +LG +Q G  + +     L+  +L  A    K   L +D
Sbjct: 1010 VLGAEQHGHMEAVGYD--LYCKMLNQAVLALKGETLEED 1046


>gi|254374445|ref|ZP_04989927.1| hypothetical protein FTDG_00614 [Francisella novicida GA99-3548]
 gi|151572165|gb|EDN37819.1| hypothetical protein FTDG_00614 [Francisella novicida GA99-3548]
          Length = 1141

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 143/417 (34%), Positives = 219/417 (52%), Gaps = 13/417 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  + +   G   +++ +   +   + P+  T  Q SAI D+ +DM     M R++ G
Sbjct: 566 LEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICG 625

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT +A+ A   A +   Q  I+ P  ILAQQHY   K    NT + +E+IT +  
Sbjct: 626 DVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKT 685

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++  E +  G   IIIGTH L    I +  L L+I+DE+HRFGV Q+ KL      
Sbjct: 686 PKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAE 745

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L M+ATPIPR+L +      D+S I   PA R  +KT +   +  + + E +     
Sbjct: 746 IDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDN-NIIREAVSRETI 804

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  ++E  ++       E    L       IAI HG+MS+ + + VM  FK+ 
Sbjct: 805 RGGQIFYLYNKVETIQKKK-----EILQELFPRL--RIAIAHGQMSEKEIQKVMFDFKHN 857

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--P 598
              +L+ TT+IE GID+ +A+ +IIE+A + GLAQLHQLRGRVGR    +   +L     
Sbjct: 858 KYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEA 917

Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            ++K++  RL  + NTE    GF +A  DL+ R  GEILG +QSG    +     + 
Sbjct: 918 SITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSGNIDGIGLNLYMD 974


>gi|300857300|ref|YP_003782284.1| putative transcription-repair coupling factor [Clostridium
            ljungdahlii DSM 13528]
 gi|300437415|gb|ADK17182.1| predicted transcription-repair coupling factor [Clostridium
            ljungdahlii DSM 13528]
          Length = 1173

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 140/452 (30%), Positives = 233/452 (51%), Gaps = 18/452 (3%)

Query: 231  DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            +E+    + L  +R   K       + +    ++     P+  T  Q + I+DI QDM  
Sbjct: 589  EEIAEDLVKLYAIRSTLKG---YKYSKDTVWQKQFEDEFPYEETPDQLTTIQDIKQDMES 645

Query: 291  KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
               M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY    +   +  +
Sbjct: 646  DKVMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHYNNFVQRFSDFPV 705

Query: 351  IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +++I+     A ++ +++ +  G   I+IGTH + Q  +Q+  L L+I+DE+ RFGV  
Sbjct: 706  KIDMISRFRTTAQQKASIKAVKVGDVDILIGTHRILQKDVQFKDLGLLIIDEEQRFGVSH 765

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            + K+ +      VL ++ATPIPRTL ++ +G  DIS I   P  R PI+T ++  N    
Sbjct: 766  KEKIKKIRKNVDVLTLSATPIPRTLHMSLVGARDISVIETPPEERYPIQTYVVEYND-QL 824

Query: 471  VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            + + +   ++ G + Y++  ++E  KE            L     + +A+ HG+M + + 
Sbjct: 825  IRDAILREINRGGQVYFVYNRVESIKEMASY-----IAKLIPE--AKVAVAHGQMQEREL 877

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E+++  F      +L+ATT+IE G+D+ + + +II +A+  GL+QL+QLRGRVGR   ++
Sbjct: 878  ENIIVDFMKNEYNVLVATTIIETGMDIQNVNTMIIYDADKMGLSQLYQLRGRVGRTNRMA 937

Query: 591  SCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
             C L Y     L++ +  RL  +K       GF IA +DL+ R  G ++G  Q G    +
Sbjct: 938  YCYLSYRRDKVLTEVAEKRLKAIKEFTELGSGFKIALKDLEIRGAGNMMGASQHGHMAAV 997

Query: 646  IAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
                 L+  +LE   K  K  + ++P  T+V 
Sbjct: 998  GYD--LYCRMLEDTIKLIKGDIDKEPVETTVE 1027


>gi|322373973|ref|ZP_08048507.1| transcription-repair coupling factor [Streptococcus sp. C150]
 gi|321276939|gb|EFX54010.1| transcription-repair coupling factor [Streptococcus sp. C150]
          Length = 1168

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 150/452 (33%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +    +    +  ++ 
Sbjct: 557 KLNDGRFQRTKQKVSKQVEDIADDLLKLYA--ERSQLKGFAFSPDDDNQRDFEDDFAYAE 614

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV  G Q  I+ P  +L
Sbjct: 615 TVDQLRSIKEIKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVL 674

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A QHY   K+  +N  + V+ ++    +  + + +E +A G+  IIIGTH L    +++ 
Sbjct: 675 AHQHYLNFKERFENHAVEVDELSRFRSKKEQNETIENLAKGRIDIIIGTHRLLSKDVEFS 734

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 735 DLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSIIETAPT 794

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + ++I  ++E           ++ + LHE 
Sbjct: 795 NRYPVQTYVMETN-PGLIREAVLREMDRGGQVFYIYNRVETID--------QKVSELHEL 845

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + I  +HG+MS+   E+ +  F NG   +L+ATT+IE GID+ + + + IENA+H G
Sbjct: 846 VPEARIGFVHGQMSESMLENTLLDFLNGDYDVLVATTIIETGIDISNVNTLFIENADHMG 905

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 906 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLDAIKGFTELGSGFKIAMRDLSI 965

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 966 RGAGNILGASQSGFID--SVGFEMYSQLLEEA 995


>gi|294505877|ref|YP_003569935.1| transcription-repair coupling factor [Salinibacter ruber M8]
 gi|294342205|emb|CBH22983.1| Transcription-repair coupling factor [Salinibacter ruber M8]
          Length = 1298

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 147/460 (31%), Positives = 239/460 (51%), Gaps = 18/460 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
              +W    +      + +A  +  L  ++  K   G   + +    +++  +  F  T  
Sbjct: 679  SEQWEKKKQRTKDQVKEVARDLIKLYAKR--KASDGYAFSSDTTWQREMEASFEFEDTPD 736

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            Q  A K + +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  ILAQQ
Sbjct: 737  QAEATKAVKRDMEEPVPMDRLVCGDVGFGKTEVAVRAAFKAVQDGKQVAMLVPTTILAQQ 796

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            H++   +  +   + VE+++    +  + K LE++  GQ  I+IGTH +  D I +  L 
Sbjct: 797  HHDTFSERMERFPVNVEVLSRFRSRTEQSKVLEKLEKGQVDILIGTHRITSDDITFDDLG 856

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L++VDE+ RFGV+ + KL +   A   L +TATPIPRTL  + LG  D+S I   P  R+
Sbjct: 857  LLVVDEEQRFGVKTKEKLRKMREAIDTLTLTATPIPRTLQFSLLGARDLSLIETPPPNRQ 916

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            PI T I   +  D + + +    S G + ++I  +++   E     V E   ++  +   
Sbjct: 917  PINTEIHTFDE-DVIRDAIVYETSRGGQVFFIHNRVKTIHE-----VAEMVRAMVPNV-- 968

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN-AEHFGLAQ 575
             + + HG+MS  + E VM  F N    +L++T++IE G+D+ +A+ +II +  EHFGL++
Sbjct: 969  RVGVGHGQMSASELEDVMLDFVNEKLDVLVSTSIIENGLDISNANTMIINHAGEHFGLSE 1028

Query: 576  LHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
            LHQLRGRVGR +  + C LL      L+ ++  RL  ++   D   GF IA  DL  R  
Sbjct: 1029 LHQLRGRVGRSQRKAFCHLLVPSVHGLTDDARERLKAVEQFSDLGSGFDIAMRDLDIRGA 1088

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            G +LG +QSG  +      E +  +L+ A K+ +     D
Sbjct: 1089 GSLLGAEQSGFIED--VGYETYHKILDQAVKELREEEFDD 1126


>gi|208779432|ref|ZP_03246778.1| transcription-repair coupling factor [Francisella novicida FTG]
 gi|208745232|gb|EDZ91530.1| transcription-repair coupling factor [Francisella novicida FTG]
          Length = 1141

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 143/417 (34%), Positives = 219/417 (52%), Gaps = 13/417 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  + +   G   +++ +   +   + P+  T  Q SAI D+ +DM     M R++ G
Sbjct: 566 LEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICG 625

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT +A+ A   A +   Q  I+ P  ILAQQHY   K    NT + +E+IT +  
Sbjct: 626 DVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKT 685

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++  E +  G   IIIGTH L    I +  L L+I+DE+HRFGV Q+ KL      
Sbjct: 686 PKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAE 745

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L M+ATPIPR+L +      D+S I   PA R  +KT +   +  + + E +     
Sbjct: 746 IDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDN-NIIREAVSRETI 804

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  ++E  ++       E    L       IAI HG+MS+ + + VM  FK+ 
Sbjct: 805 RGGQIFYLYNKVETIQKKK-----EILQELFPRL--RIAIAHGQMSEKEIQKVMFDFKHN 857

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--P 598
              +L+ TT+IE GID+ +A+ +IIE+A + GLAQLHQLRGRVGR    +   +L     
Sbjct: 858 KYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEA 917

Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            ++K++  RL  + NTE    GF +A  DL+ R  GEILG +QSG    +     + 
Sbjct: 918 SITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSGNIDGIGLNLYMD 974


>gi|319441663|ref|ZP_07990819.1| transcription-repair coupling factor [Corynebacterium variabile DSM
            44702]
          Length = 1231

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 139/474 (29%), Positives = 239/474 (50%), Gaps = 20/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++       +A ++  L   +Q     G   + + +  +++    PF+ T+ Q 
Sbjct: 613  DWKTAKKKARGAVREIAAELVQLYAARQAA--PGFAFDPDNQWTRQMEEAFPFTETEDQY 670

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ +  DM +   M R++ GDVG GKT VA+ A   AV++G Q  ++ P  +LAQQHY
Sbjct: 671  NAIEAVKDDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQHY 730

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                   Q+    +  ++        ++ L  +A G   I++GTH L    +Q+  L LV
Sbjct: 731  RTFVDRMQDFPTTIRELSRFTSGRESKETLAGMADGTVDIVVGTHRLLATGVQWKNLGLV 790

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +T   T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 791  IVDEEQRFGVEHKEHITSLRTHVDVLTMSATPIPRTLEMSMTGIREMSTILTPPEDRHPV 850

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T +   +    V   ++  L    + +++  ++        +S+ +    + E    + 
Sbjct: 851  LTYVGAQDDRH-VAAAVRRELLRDGQVFYVHNRV--------KSIEDAAAHIRELVPEAR 901

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + + HG+MS+   E+ +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLH
Sbjct: 902  VVVAHGQMSEEQLETTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLH 961

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR  E +     Y     L++ SY RL  +    D   G  +A +DL+ R  G 
Sbjct: 962  QLRGRVGRSRERAYAYFFYPKGEMLTETSYDRLRTIAENNDLGAGMAVAMKDLEMRGAGN 1021

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD-PDLTSVRGQSIRILL 685
            +LG +QSG         +L+  L+  A +  + +   +  D +    + IRI L
Sbjct: 1022 VLGAEQSGHI--AGVGFDLYVRLVGEAVEAYRAMADGEVVDGSDKEKKEIRIDL 1073


>gi|189218310|ref|YP_001938952.1| transcription-repair coupling factor mfd (superfamily II helicase)
           [Methylacidiphilum infernorum V4]
 gi|189185168|gb|ACD82353.1| Transcription-repair coupling factor mfd (superfamily II helicase)
           [Methylacidiphilum infernorum V4]
          Length = 1060

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 140/444 (31%), Positives = 230/444 (51%), Gaps = 15/444 (3%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +R A   +      LL +  + +   G     + +  ++      +  T  Q  AI++  
Sbjct: 485 KRAAQKAVTDLAEKLLKINAEREVLEGFAFPQDDQWQKEFEEAFIYEETPDQLKAIEETK 544

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
           +DM  K  M R++ GDVG GKT VA+ A+  AV  G QAV++ P  +LA+QH+  +++  
Sbjct: 545 KDMESKRPMDRLICGDVGFGKTEVAIRAIFKAVMGGKQAVLLTPTTVLAKQHFNTLRERF 604

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
            +  I   ++   +  +  ++ L  +  G   +++GTH L    +++  L L+++DE+ R
Sbjct: 605 ADYPIHTALLCRFVKNSEEKEILAGLKEGTVDVVVGTHRLLSADVEFKDLGLIVIDEEQR 664

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV Q+ K  +K     VLL++ATPIPRTL L   G  D+S I   P  R PI+T++ P 
Sbjct: 665 FGVLQKEKWKEKFRFIDVLLLSATPIPRTLYLAMAGARDMSLIETPPPNRFPIETIVGPY 724

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           +    + + ++  L+ G + Y++  +I   ++        R  SL       I I HGRM
Sbjct: 725 DER-VIRQAIERELNRGGQVYFLHNRIRTIEKVAS-----RLKSLLPSI--KIDIGHGRM 776

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              + E VM+ F  G   +L+AT++IE G+D+ +A+ III+ A+ FGLA L+QLRGRVGR
Sbjct: 777 KKHELEEVMERFVEGKIDVLLATSIIENGLDIPNANTIIIDRADLFGLADLYQLRGRVGR 836

Query: 586 GEEISSCILLYHPPL--SKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             + +   LL    L    ++  R+  ++       GF IA  DL+ R  G +LG  QSG
Sbjct: 837 SNQKAYAYLLLPRDLFIQSDAKKRIKAMQEHSQLGTGFQIALRDLEIRGAGNLLGTSQSG 896

Query: 641 MPKFLIAQPELHDSLLEIARKDAK 664
               +    EL+  LL+ A +  +
Sbjct: 897 HIASI--GFELYCKLLKKAIQKIQ 918


>gi|332678337|gb|AEE87466.1| Transcription-repair coupling factor [Francisella cf. novicida Fx1]
          Length = 1141

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 143/417 (34%), Positives = 219/417 (52%), Gaps = 13/417 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  + +   G   +++ +   +   + P+  T  Q SAI D+ +DM     M R++ G
Sbjct: 566 LEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICG 625

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT +A+ A   A +   Q  I+ P  ILAQQHY   K    NT + +E+IT +  
Sbjct: 626 DVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKT 685

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++  E +  G   IIIGTH L    I +  L L+I+DE+HRFGV Q+ KL      
Sbjct: 686 PKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAE 745

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L M+ATPIPR+L +      D+S I   PA R  +KT +   +  + + E +     
Sbjct: 746 IDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDN-NIIREAVSRETI 804

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  ++E  ++       E    L       IAI HG+MS+ + + VM  FK+ 
Sbjct: 805 RGGQIFYLYNKVETIQKKK-----EILQELFPRL--RIAIAHGQMSEKEIQKVMFDFKHN 857

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--P 598
              +L+ TT+IE GID+ +A+ +IIE+A + GLAQLHQLRGRVGR    +   +L     
Sbjct: 858 KYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEA 917

Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            ++K++  RL  + NTE    GF +A  DL+ R  GEILG +QSG    +     + 
Sbjct: 918 SITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSGNIDGIGLNLYMD 974


>gi|218440658|ref|YP_002378987.1| transcription-repair coupling factor [Cyanothece sp. PCC 7424]
 gi|218173386|gb|ACK72119.1| transcription-repair coupling factor [Cyanothece sp. PCC 7424]
          Length = 1168

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 151/482 (31%), Positives = 248/482 (51%), Gaps = 20/482 (4%)

Query: 189  IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
            I  D L   S        N      K     W    ++     + LA  +  L  ++  +
Sbjct: 543  IPSDSLD--SLSRYRHTSNTPPQLDKMTGKTWEQTKQKVRKTVKKLAVDLINLYAKRAQQ 600

Query: 249  KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +        +    Q++  + P+ PT  Q  AI+++ +DM  +  M R++ GDVG GKT 
Sbjct: 601  EG--FAYPDDSPWQQELEDSFPYQPTPDQIKAIQEVKRDMMNERPMDRLVCGDVGFGKTE 658

Query: 309  VALIAMAAAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            VA+ A+  AV +G  Q   +AP  IL QQHY  +K+      I + ++      +  R  
Sbjct: 659  VAVRAIFKAVTSGNKQVAFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTPSENRDI 718

Query: 368  LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            L+R+A G+  I++GTH L  + +++  L L+++DE+ RFGV Q+ K+    T   VL +T
Sbjct: 719  LQRLATGELDIVVGTHQLLSNKVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLT 778

Query: 428  ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            ATPIPRTL ++  G  ++S IT  P  R+PIKT + P N  D +   ++  L  G + ++
Sbjct: 779  ATPIPRTLYMSLSGVREMSLITTPPPSRRPIKTHLTPYN-PDALRTAIRNELDRGGQIFY 837

Query: 488  ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            + P++E  +E                 T+ IAI HG+MS  + E  M +F NG   +L+ 
Sbjct: 838  VVPRVEGIEEV-------AAEIRDMIPTARIAIAHGQMSVSELEPTMLAFNNGEADILVC 890

Query: 548  TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605
            TT+IE G+D+   + II+E+A+ FGL+QL+QLRGRVGR    +   L+Y     L++ + 
Sbjct: 891  TTIIESGLDIPRVNTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLVYPHKAALTETAR 950

Query: 606  TRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
             RL  L+       G+ +A  D++ R  G +LG +QSG  + +     L+  +L+ A ++
Sbjct: 951  QRLRALQEFTQLGSGYQLATRDMEIRGVGNLLGAEQSGQMEAIGFD--LYMEMLQEAIRE 1008

Query: 663  AK 664
             +
Sbjct: 1009 IQ 1010


>gi|319934923|ref|ZP_08009368.1| transcription-repair coupling factor [Coprobacillus sp. 29_1]
 gi|319810300|gb|EFW06662.1| transcription-repair coupling factor [Coprobacillus sp. 29_1]
          Length = 1141

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 142/488 (29%), Positives = 239/488 (48%), Gaps = 30/488 (6%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  EW    +      + LA ++  L       K+ G     +  +  +      + 
Sbjct: 542  HSLNSSEWQKTKQRVRKKVDDLADKLIELYA--ARMKQAGFAYPKDDALQIQFEECFGYE 599

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q+ A+K+I  DM     M R+L GDVG GKT VAL A   A+ A  Q   + P  I
Sbjct: 600  LTPDQQEAVKEIKADMELPRPMDRLLCGDVGFGKTEVALRACFKAILANKQVAFLCPTTI 659

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            L+ QHY  + K  +N  + + ++        ++   E + +G+  +++GTH +    + +
Sbjct: 660  LSAQHYHTMIKRFENFPVRIALLNRFTTLKQKKVIFEDLKNGKIDLLVGTHRILSKDVVF 719

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+ +DE+ RFGV+Q+ ++ Q      VL +TATPIPRTL ++ +G   +S+I   P
Sbjct: 720  KDLGLLCIDEEQRFGVRQKEQIKQLRETIDVLTLTATPIPRTLQMSLMGIRGLSQIETPP 779

Query: 453  AGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICP---QIEEKKESNFRSVVERF 507
              R P++T ++  +   I +VIE     L    + +++      IE       R V E  
Sbjct: 780  LNRLPVQTYVMEKSEQLIKQVIE---RELGRKGQVFYLYNKTSNIESVANHIARMVPE-- 834

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                    + + I HG+M+    E VM +F +    +L+ TT+IE GID+ +A+ IIIE+
Sbjct: 835  --------AKVGIGHGKMNKEQLEDVMQAFVDKEYDVLVCTTIIETGIDIPNANTIIIED 886

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAE 622
            A+ FGL+QL+Q++GRVGR E ++   LLY  +  +++ +  RL  +K       G+ IA 
Sbjct: 887  ADRFGLSQLYQIKGRVGRSERVAYAYLLYAKNKQMNEEASKRLKAIKEFAQLGSGYKIAM 946

Query: 623  EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
             DL  R  G+ILG +Q+G    +     ++  +L+ A  +      + P+   V  Q+I 
Sbjct: 947  RDLSIRGSGDILGGEQAGFIDSVGFD--MYMKILQEAIDEKT---GEKPEEKEVPIQNIN 1001

Query: 683  ILLYLYQY 690
            I  Y+ + 
Sbjct: 1002 IEGYIPEN 1009


>gi|118497630|ref|YP_898680.1| transcription-repair coupling factor [Francisella tularensis subsp.
           novicida U112]
 gi|195536331|ref|ZP_03079338.1| transcription-repair coupling factor [Francisella tularensis subsp.
           novicida FTE]
 gi|118423536|gb|ABK89926.1| transcription-repair coupling factor [Francisella novicida U112]
 gi|194372808|gb|EDX27519.1| transcription-repair coupling factor [Francisella tularensis subsp.
           novicida FTE]
          Length = 1141

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 143/417 (34%), Positives = 219/417 (52%), Gaps = 13/417 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  + +   G   +++ +   +   + P+  T  Q SAI D+ +DM     M R++ G
Sbjct: 566 LEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICG 625

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT +A+ A   A +   Q  I+ P  ILAQQHY   K    NT + +E+IT +  
Sbjct: 626 DVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKT 685

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++  E +  G   IIIGTH L    I +  L L+I+DE+HRFGV Q+ KL      
Sbjct: 686 PKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAE 745

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L M+ATPIPR+L +      D+S I   PA R  +KT +   +  + + E +     
Sbjct: 746 IDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDN-NIIREAVSRETI 804

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  ++E  ++       E    L       IAI HG+MS+ + + VM  FK+ 
Sbjct: 805 RGGQIFYLYNKVETIQKKK-----EILQELFPRL--RIAIAHGQMSEKEIQKVMFDFKHN 857

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--P 598
              +L+ TT+IE GID+ +A+ +IIE+A + GLAQLHQLRGRVGR    +   +L     
Sbjct: 858 KYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEA 917

Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            ++K++  RL  + NTE    GF +A  DL+ R  GEILG +QSG    +     + 
Sbjct: 918 SITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSGNIDGIGLNLYMD 974


>gi|194289485|ref|YP_002005392.1| transcription-repair ATP-dependent coupling factor, helicase
            [Cupriavidus taiwanensis LMG 19424]
 gi|193223320|emb|CAQ69325.1| transcription-repair ATP-dependent coupling factor, helicase
            [Cupriavidus taiwanensis LMG 19424]
          Length = 1149

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 155/472 (32%), Positives = 235/472 (49%), Gaps = 19/472 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++    P++   K  +    +  F  T  Q 
Sbjct: 556  QWDKAKRRAAQQIRDTAAELLNLYARRAAREGFAFPLSP--KDYETFAESFGFEETPDQA 613

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QH+
Sbjct: 614  AAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVAMLAPTTLLAEQHF 673

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +        + +  ++    +     A+++I  G   I+IGTH +  D +++ +L LV
Sbjct: 674  QTLSDRFAEWPVRIVELSRFKTKKEIDAAIKQINEGSVDIVIGTHKILSDQVKFQRLGLV 733

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 734  IIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 793

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +   R   L     + I
Sbjct: 794  KTFV-RREEDGVIREAILRELKRGGQVYFLHNEVETIE-----NKRARLAELVPE--ARI 845

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F +    +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQ
Sbjct: 846  AVAHGQMHERELERVMRDFVSRRDNILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQ 905

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H    L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 906  LRGRVGRSHHQAYAYLLVHDVDGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV 965

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG KQSG    +  Q  L+  +L  A K  K    ++PDL +    +  I L
Sbjct: 966  LGDKQSGEIHEIGFQ--LYTDMLNHAVKALKA--GKEPDLMAPLAATTEINL 1013


>gi|297205117|ref|ZP_06922513.1| transcription-repair coupling factor [Lactobacillus jensenii
           JV-V16]
 gi|297149695|gb|EFH29992.1| transcription-repair coupling factor [Lactobacillus jensenii
           JV-V16]
          Length = 1162

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 229/450 (50%), Gaps = 19/450 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R   +  E +A  +  L   ++ +   G   + +  + ++     P+  T  Q 
Sbjct: 562 QWAKTKRSVQSKVEDIADDLIKLYAARESE--KGYAFSKDNDLQKEFEDAFPYVETPDQL 619

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I  DM +   M R+L GDVG GKT VA+ A   A++   Q   + P  ILAQQH+
Sbjct: 620 RSSNEIKADMEKSKAMDRLLVGDVGFGKTEVAIRAAFKAIQDNKQVAFLVPTTILAQQHF 679

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + I    ++  + V +++        +  LE +  G+  +++GTH +    +++  L L+
Sbjct: 680 DNISDRFKDFPVNVALLSRFQSNTEVKDILEGLKDGKIDLVVGTHRILSKDVEFKDLGLL 739

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 740 IIDEEQRFGVKHKERLKELKNNVDVLTLTATPIPRTLHMSMVGVRDLSVMETPPVNRYPI 799

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +T ++   ++  VI E     ++   + +++  +I +  E      VE    L     + 
Sbjct: 800 QTYVME--QLPSVIREACLREMARDGQIFYLHNRIGDIDE-----TVEHLQQLIPE--AK 850

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  IHGRMS+     ++  F +    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+
Sbjct: 851 IEAIHGRMSENQMSDILYRFLHKQFDILVTTTIIETGIDMPNVNTLIIEDADHYGLSQLY 910

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G 
Sbjct: 911 QLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLEAIRDFTELGSGFKIAMRDLSIRGAGN 970

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +LG +Q G    +     L+  +L+ A K 
Sbjct: 971 MLGQQQHGFIDSVGYD--LYAQMLDDAIKA 998


>gi|257886022|ref|ZP_05665675.1| transcription-repair coupling factor [Enterococcus faecium 1,231,501]
 gi|257821878|gb|EEV49008.1| transcription-repair coupling factor [Enterococcus faecium 1,231,501]
          Length = 1173

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 138/446 (30%), Positives = 233/446 (52%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  +  L   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVSSKIEDIADDLIKLYAARESE--KGYAFGPDDAYQKEFENAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 688  ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E +   +  G + +++  ++E  +       VE    L     + I
Sbjct: 808  QTYVMEKN-PGAIREAIHREMGRGGQVFYLYNRVETIE-----QKVEEIQELVPE--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+ +  F  G   +L+ATT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  GYAHGQMTEAQLENTLFEFIEGQYDVLVATTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G         +++  +L  A
Sbjct: 980  LGAQQHGFID--AVGFDMYSQMLSEA 1003


>gi|187931883|ref|YP_001891868.1| transcription-repair coupling factor [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712792|gb|ACD31089.1| transcription-repair coupling factor [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 1141

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 143/417 (34%), Positives = 219/417 (52%), Gaps = 13/417 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  + +   G   +++ +   +   + P+  T  Q SAI D+ +DM     M R++ G
Sbjct: 566 LEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICG 625

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT +A+ A   A +   Q  I+ P  ILAQQHY   K    NT + +E+IT +  
Sbjct: 626 DVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKT 685

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++  E +  G   IIIGTH L    I +  L L+I+DE+HRFGV Q+ KL      
Sbjct: 686 PKAQQQLFEDLKKGTIDIIIGTHKLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAE 745

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L M+ATPIPR+L +      D+S I   PA R  +KT +   +  + + E +     
Sbjct: 746 IDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDN-NIIREAVSRETI 804

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  ++E  ++       E    L       IAI HG+MS+ + + VM  FK+ 
Sbjct: 805 RGGQIFYLYNKVETIQKKK-----EILQELFPRL--RIAIAHGQMSEKEIQKVMFDFKHN 857

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--P 598
              +L+ TT+IE GID+ +A+ +IIE+A + GLAQLHQLRGRVGR    +   +L     
Sbjct: 858 KYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEA 917

Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            ++K++  RL  + NTE    GF +A  DL+ R  GEILG +QSG    +     + 
Sbjct: 918 SITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSGNIDGIGLNLYMD 974


>gi|322381190|ref|ZP_08055193.1| transcription-repair coupling factor-like protein [Paenibacillus
            larvae subsp. larvae B-3650]
 gi|321154766|gb|EFX47037.1| transcription-repair coupling factor-like protein [Paenibacillus
            larvae subsp. larvae B-3650]
          Length = 1173

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 133/457 (29%), Positives = 231/457 (50%), Gaps = 17/457 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +  +  + +A  +  L   +Q    +G   + +     +     P+  T  Q 
Sbjct: 560  EWARVKNKVRSSVKDIADDLIKLYAERQS--TLGYAFSKDSTYQHEFEAMFPYDETHDQL 617

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI++I +DM +   M R+L GDVG GKT VA+ A   A   G Q  ++ P  ILAQQHY
Sbjct: 618  RAIEEIKKDMEKPLPMDRLLCGDVGYGKTEVAIRAAFKAAIDGKQVAVLVPTTILAQQHY 677

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  ++   +    +++++    +  + + ++ I  G   I+IGTH L    +++ +L L+
Sbjct: 678  ETFRERFADFPFNIQVMSRFRSKKEQNETIKSIKAGTVDIVIGTHRLLSQDVKFKELGLL 737

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 738  IVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 797

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++       V E ++  L+   + Y++  +++         + ++ + L     + +
Sbjct: 798  QTYVLEHTPT-LVREAIERELAREGQVYYLFNRVQ-----GITQIADQISMLVPD--ARV 849

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++ HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 850  SVAHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQ 909

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 910  LRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLAIRGAGNL 969

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            LG +Q G         +L+  +L       K  +  +
Sbjct: 970  LGAEQHGFI--ASVGFDLYSQMLSEEINKRKQEMEGE 1004


>gi|256852011|ref|ZP_05557398.1| transcription-repair coupling factor [Lactobacillus jensenii
           27-2-CHN]
 gi|260661420|ref|ZP_05862333.1| transcription-repair coupling factor [Lactobacillus jensenii
           115-3-CHN]
 gi|282933683|ref|ZP_06339041.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
 gi|256615423|gb|EEU20613.1| transcription-repair coupling factor [Lactobacillus jensenii
           27-2-CHN]
 gi|260547875|gb|EEX23852.1| transcription-repair coupling factor [Lactobacillus jensenii
           115-3-CHN]
 gi|281302173|gb|EFA94417.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
          Length = 1162

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 229/450 (50%), Gaps = 19/450 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R   +  E +A  +  L   ++ +   G   + +  + ++     P+  T  Q 
Sbjct: 562 QWAKTKRSVQSKVEDIADDLIKLYAARESE--KGYAFSKDNDLQKEFEDAFPYVETPDQL 619

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I  DM +   M R+L GDVG GKT VA+ A   A++   Q   + P  ILAQQH+
Sbjct: 620 RSSNEIKADMEKSKAMDRLLVGDVGFGKTEVAIRAAFKAIQDNKQVAFLVPTTILAQQHF 679

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + I    ++  + V +++        +  LE +  G+  +++GTH +    +++  L L+
Sbjct: 680 DNISDRFKDFPVNVALLSRFQSNTEVKDILEGLKDGKIDLVVGTHRILSKDVEFKDLGLL 739

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 740 IIDEEQRFGVKHKERLKELKNNVDVLTLTATPIPRTLHMSMVGVRDLSVMETPPVNRYPI 799

Query: 459 KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           +T ++   ++  VI E     ++   + +++  +I +  E      VE    L     + 
Sbjct: 800 QTYVME--QLPSVIREACLREMARDGQIFYLHNRIGDIDE-----TVEHLQQLIPE--AK 850

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  IHGRMS+     ++  F +    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL+
Sbjct: 851 IEAIHGRMSENQMSDILYRFLHKQFDILVTTTIIETGIDMPNVNTLIIEDADHYGLSQLY 910

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G 
Sbjct: 911 QLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLEAIRDFTELGSGFKIAMRDLSIRGAGN 970

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           +LG +Q G    +     L+  +L+ A K 
Sbjct: 971 MLGQQQHGFIDSVGYD--LYAQMLDDAIKA 998


>gi|196250768|ref|ZP_03149455.1| transcription-repair coupling factor [Geobacillus sp. G11MC16]
 gi|196209718|gb|EDY04490.1| transcription-repair coupling factor [Geobacillus sp. G11MC16]
          Length = 1177

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 131/435 (30%), Positives = 225/435 (51%), Gaps = 15/435 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            + +  + +   G   + + ++ ++     P+  T+ Q  +I++I +DM  +  M R+L G
Sbjct: 592  IKLYAEREASKGYAFSQDTEMQREFEAAFPYQETEDQLRSIEEIKRDMESEKPMDRLLCG 651

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   A+  G Q   + P  ILAQQHYE +++  Q   I V ++     
Sbjct: 652  DVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGFPINVGLLNRFRT 711

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            +  + + ++ +  G   ++IGTH L    +++  L L+I+DE+ RFGV  + K+ Q    
Sbjct: 712  RKQQAETIKGLKDGTIDMVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVAHKEKIKQLKAN 771

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL +TATPIPRTL ++ +G  D+S I   P  R P++T ++     + V E ++  L+
Sbjct: 772  IDVLTLTATPIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEY-TPELVKEAIERELA 830

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
               + +++   IE+          E    L     + +   HGRMS+ + ES + +F  G
Sbjct: 831  RDGQVFFLYNHIEDID-----LRAEEIAQLVPE--ARVTFAHGRMSEAELESTILAFLEG 883

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
               +L+ TT+IE G+D+ + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y    
Sbjct: 884  QYDVLVTTTIIETGVDIPNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDK 943

Query: 600  -LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             L++ +  RL  +K       GF IA  DL  R  G ILG +Q G    +     L+  +
Sbjct: 944  VLNETAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNILGAEQHGFIDSVGFD--LYSQM 1001

Query: 656  LEIARKDAKHILTQD 670
            L+ A +  + +  ++
Sbjct: 1002 LKEAIEKRRGLKQEE 1016


>gi|148245051|ref|YP_001219745.1| transcription-repair coupling factor [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326878|dbj|BAF62021.1| transcription-repair coupling factor [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 1145

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 140/462 (30%), Positives = 225/462 (48%), Gaps = 16/462 (3%)

Query: 197 KSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255
            +  S     ++   P  K    +W    ++       +A ++  +  ++  +     P 
Sbjct: 528 FNLISRYAGISLKSTPLHKLGTNQWAKAKKKAGEALFDIAVELLKISAKRSSQTGFSFPK 587

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
             +   +   + N PF  T  Q   + ++L DM  +  M R++ GDVG GKT +A+ A  
Sbjct: 588 PNDDYSS--FVANFPFEETPDQIKTMNEVLADMQSQQPMDRLVCGDVGFGKTEIAMRAAF 645

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
            AV+AG Q  I+ P  +L+ QHY        N    +  ++       ++  +E++  G 
Sbjct: 646 LAVKAGKQVAILVPTTLLSNQHYRSFIDRFTNDPTKIATLSRFQTPKEQKIIIEQLKQGT 705

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             IIIGTH + Q++I+Y  L L+I+DE+HRFGV+Q+  L +      +L MTATPIPRTL
Sbjct: 706 IDIIIGTHKIIQNNIKYKNLSLIIIDEEHRFGVKQKEALKKLRGQSDILTMTATPIPRTL 765

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +      ++S I   PA R  I+T +   +  D + E +   +  G + + +   I   
Sbjct: 766 NMALGSLRELSIIATPPAKRSTIQTFVQEWHN-DNIKEAITREIHRGGQVFILHNDINSI 824

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                 ++ E    +       IA  HG++   + E +M  F +    +L+ TT+IE GI
Sbjct: 825 D-----NMAENLKQIIPKLQIRIA--HGKIPTRELEQIMSDFYHARFHILVCTTIIETGI 877

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLK- 612
           D+ +A+ III NA++FGLAQLHQLRGRVGR    +   L+   H  LSK +  RL V+K 
Sbjct: 878 DIPNANTIIINNAQNFGLAQLHQLRGRVGRSHHRAYAYLIVKSHLSLSKTAKDRLDVIKS 937

Query: 613 --NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
                 GF++A  DL+ R  G++LG  QSG    +       
Sbjct: 938 LTELGSGFMLANHDLEIRGAGDLLGDNQSGQISEIGFNLYHD 979


>gi|326334855|ref|ZP_08201056.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692892|gb|EGD34830.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 1108

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 140/451 (31%), Positives = 228/451 (50%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  +   A  + +A  +  L  ++  K+ +G     +  + +++  +  +  T  Q  
Sbjct: 502 WKTLKQRTKARVKQIAFNLIQLYAKR--KESVGYAFAPDSFLQKELEASFIYEDTPDQSK 559

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  ++ QDM     M R++ GDVG GKT VA+ A   AV+   Q  ++ P  ILA QHY+
Sbjct: 560 ATLEVKQDMESARPMDRLVCGDVGFGKTEVAIRAAFKAVDNSKQVAVLVPTTILAFQHYQ 619

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                 +   + VE +        + + L  +A G+  I+IGTH +  + ++Y  L L+I
Sbjct: 620 TFCDRLKGLPVRVEYLNRFRTAKEKNQVLTDLALGKIDILIGTHQIVNEKVKYKDLGLLI 679

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S IT  P  R PI+
Sbjct: 680 IDEEQKFGVAVKDKLKTLRENIDVLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIE 739

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + +I  +  + + + +   L  G + ++I  ++E  KE            L     + I 
Sbjct: 740 SQVITFSE-EAIRDAISYELQRGGQVFFIHNRVENIKEVAG-----MIQRLVPD--ARIG 791

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E VM +F NG   +L+ATT+IE G+DV +A+ I I NA+HFGL+ LHQ+
Sbjct: 792 IGHGQMEGKALEEVMLAFINGDYDILVATTIIESGLDVPNANTIFIHNAQHFGLSDLHQM 851

Query: 580 RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +      L ++S  R+  +    D   G  IA +DL+ R  G++L
Sbjct: 852 RGRVGRSNKKAFCYFITPNLSELPEDSRKRIQAIAQFSDLGSGIQIAMKDLEIRGAGDLL 911

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG    +      +  +L+ A  + K 
Sbjct: 912 GGEQSGFINDIGFD--AYQKILQEAVMELKE 940


>gi|315655508|ref|ZP_07908407.1| DNA helicase RecG [Mobiluncus curtisii ATCC 51333]
 gi|315490163|gb|EFU79789.1| DNA helicase RecG [Mobiluncus curtisii ATCC 51333]
          Length = 816

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 194/789 (24%), Positives = 325/789 (41%), Gaps = 139/789 (17%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK--RRPYKIL 93
                  DLL+Y P          +   +     VT+   +        ++  +    + 
Sbjct: 24  LGVLTLGDLLWYPPRRTYRWGELTRFDSLIPGTDVTVFAVVMDAHLGWTRRHDKAMLTVT 83

Query: 94  LNDG-------------------TGEITLLFFYRKTEML---KNVFFEGRKITV----TG 127
           L D                       +T+ FF +    L    N   +G         +G
Sbjct: 84  LQDQLETDARNEGGARPDLWGQRANRLTVRFFAKHPNALNLHANRLEKGTLAVFAGRLSG 143

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVNF-----PLIEAVYSLPTGLSVDLFKKIIV-EALSR 181
           K     +   + HP Y      D           + +Y    GL      KII  + L  
Sbjct: 144 KPDSRASEAFLAHPEYRVLADYDPEVVKTLSTRPQPLYHATAGLPSWKIGKIIDAQLLMV 203

Query: 182 LP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
            P  +PE I   L ++++ P    A   +H+P     ++        L + E      AL
Sbjct: 204 NPAEIPEAIPDSLRRERNLPDAYTALLGLHHPETDAQYQAALDY---LRFREAFTLGAAL 260

Query: 241 LLMRKQFKKEIGIPINV--------------EGKIAQKILRNIPFSPTKSQESAIKDILQ 286
              R Q +      + V               G +  +++  +PF  T  Q    +++  
Sbjct: 261 AKARNQIQSHPAWSLPVSQDVFASRTDSGGEPGDLVTQVVAGLPFQLTAGQRQVWEELAG 320

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT- 345
           D++++  M R+LQG+VGSGKT+V+ +A  AAV+ G QA  MAP  +LA QH++ + +   
Sbjct: 321 DIAREVPMNRLLQGEVGSGKTVVSALACLAAVQNGFQAAFMAPTEVLAHQHFQTLNRLLG 380

Query: 346 --------------QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
                             + + ++TG+ P   +R+  +R A G+  +++GT AL  +S+Q
Sbjct: 381 DLADPLEGLSGKQPSMDNVPLRLLTGSTPAPEKREIADRGAAGEPMLVVGTQALLTESLQ 440

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDIDISKITE 450
             +L LV+VDEQHRFGV+QR  L  +    PH L MTATPIPRT+ +T  GD+D+S + +
Sbjct: 441 LSRLALVVVDEQHRFGVEQRGALLARGERAPHFLTMTATPIPRTVAMTVFGDLDVSVLRQ 500

Query: 451 KPAGRKPIKTVIIPINRIDEVIERL---KVVLSEGKKAYWICPQIE-------------- 493
            PAGR  ++T ++    +  V          + +G + Y +CP+I               
Sbjct: 501 LPAGRADVQTFLVNEANVRWVTRAWSRAAEEIKQGGRVYVLCPKIAPDATGQDPVSSSDS 560

Query: 494 ----------------------------------EKKESNFRSVVERFNSLHEHFTSSIA 519
                                             ++          +  +L       I 
Sbjct: 561 QHPPQGDRKTRKPTAQTSWGDDLAGFGELEELEPDRILHTVTQTAAQLTALPIFRNIPIG 620

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + H  +    K+  +  F  G   LL++TTV+EVG+DV +AS++II +A+ +G++QLHQL
Sbjct: 621 VAHSNLDSGAKQQAVSDFAAGRTPLLVSTTVVEVGMDVPEASMMIILDADRYGISQLHQL 680

Query: 580 RGRVGRGEEISSCILLYH---PPLSKN---------------SYTRLSVLKNTEDGFLIA 621
           RGR+GRG     C+ +     PP+S N               +  RL     + DGF +A
Sbjct: 681 RGRIGRGSRPGVCLAIAPLDFPPVSDNLPELMSLAGSGTLSPALARLCAFAASRDGFALA 740

Query: 622 EEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
           E DL  R+EG++LG  QSG   +  +        ++  A+  A  ++  DP L++   + 
Sbjct: 741 EADLSIRREGDVLGQNQSGRRSRLKVLSLVNDAEVITAAKAAAAAVVAADPQLSAHP-EL 799

Query: 681 IRILLYLYQ 689
            R++  L +
Sbjct: 800 ARLVFELGE 808


>gi|120437484|ref|YP_863170.1| transcription-repair coupling factor [Gramella forsetii KT0803]
 gi|117579634|emb|CAL68103.1| transcription-repair coupling factor [Gramella forsetii KT0803]
          Length = 1125

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 130/451 (28%), Positives = 231/451 (51%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++  A  + +A  +  L  +++ +   G   + +  +  ++  +  +  T  Q S
Sbjct: 507 WKNLKKKTKARVKHIAYDLIKLYAKRRLE--KGFKFDPDSYLQHELEASFMYEDTPDQSS 564

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           +   +  DM  +  M R++ GDVG GKT +A+ A   AV+   Q  I+ P  ILA QH+ 
Sbjct: 565 STAAVKADMENERPMDRLVCGDVGFGKTEIAIRAAFKAVDNNKQVAILVPTTILAFQHHR 624

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + ++ +        R++ L  +  G+  IIIGTH L   ++++  L L++
Sbjct: 625 TFTERLKDFPVRIDYLNRFRTAKERKETLADLEAGKVDIIIGTHQLVSKAVKFKDLGLLV 684

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL         L +TATPIPRTL  + +   D+S IT  P  R PI+
Sbjct: 685 VDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLSTITTPPPNRYPIE 744

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + +I  +  + + + +   +  G + ++I  ++E  KE            L     + I 
Sbjct: 745 SHVIRFSE-ETIRDAVSYEIQRGGQVFFIHNRVENIKEVAG-----MIQRLVPD--AKIG 796

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M     E +M SF NG   +L++TT++E G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 797 VGHGQMEGKKLEKLMLSFINGEFDVLVSTTIVESGLDVSEANTIFINNANNFGLSDLHQM 856

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   +++++  R++ L+       GF IA +DL+ R  G++L
Sbjct: 857 RGRVGRSNKKAFCYFITPPYSAMTEDARKRITALEQFSELGSGFNIAMKDLEIRGAGDLL 916

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG    +      +  +L  A ++ K 
Sbjct: 917 GGEQSGFINDIGFD--TYQKILNEAIEELKE 945


>gi|239815560|ref|YP_002944470.1| transcription-repair coupling factor [Variovorax paradoxus S110]
 gi|239802137|gb|ACS19204.1| transcription-repair coupling factor [Variovorax paradoxus S110]
          Length = 1165

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 162/592 (27%), Positives = 259/592 (43%), Gaps = 39/592 (6%)

Query: 117  FFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIV 176
            F    ++  T    + +N+                   + + V     G+    ++ +I 
Sbjct: 446  FVTETELFATAPTTRRRNKKQEQVSDVEALIKDLSELNVGDPVVHTAHGI--GRYRGLIH 503

Query: 177  EALSR------LPVLPEWIEKDLLQKKSF---------PSIAEAFNIIHNP-RKAKDFEW 220
              L +       P+L E +  +   K +           S     +    P  K    +W
Sbjct: 504  MDLGQGTDAEGKPLLQEMLHLEYADKATLYVPVSQLHQISRYTGVSADEAPLHKLGSGQW 563

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
                R+        A ++  +  R+  ++             +    +  F  T  Q++A
Sbjct: 564  EKAKRKAAEQVRDSAAELLNIYARRAARQG--HAFRYSAADYEVFANDFGFQETADQKAA 621

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            I  ++QDM     M R++ GDVG GKT VAL A   A+  G Q   +AP  +LA+QHY+ 
Sbjct: 622  IHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFIAITGGKQVAFLAPTTLLAEQHYQT 681

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            +        + V  ++          A + +A G   I++GTH L   S+++  L L+I+
Sbjct: 682  LVDRFAKWPVKVAEMSRFRSAKEITAAAKGLAEGTVDIVVGTHKLLSQSVKFKNLGLLII 741

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+HRFGV+ +  +        VL +TATPIPRTL +   G  D+S I   P  R  IKT
Sbjct: 742  DEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKT 801

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIA 519
             +        + E +   L  G + Y++  ++E  +         R   L E    + IA
Sbjct: 802  FVRNEG-TGVIREAVLRELKRGGQVYFLHNEVETIE--------NRRQKLEEILPEARIA 852

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM  F      LL+ +T+IE GIDV  A+ I++  A+ FGLAQLHQL
Sbjct: 853  VAHGQMPERELERVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRADKFGLAQLHQL 912

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   L+      L+K +  RL     ++    GF +A  DL+ R  GE+L
Sbjct: 913  RGRVGRSHHQAYAYLMVPDTEGLTKQAAQRLDAIQQMEELGSGFYLAMHDLEIRGTGEVL 972

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            G  QSG    +  Q  L++ +L  A +  K    Q+PDL +    +  I L+
Sbjct: 973  GENQSGNMMEIGFQ--LYNEMLSEAVRALKA--GQEPDLLAPLSVTTEINLH 1020


>gi|332878210|ref|ZP_08445938.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683822|gb|EGJ56691.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 1104

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 136/451 (30%), Positives = 229/451 (50%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++  A  + +A  +  L  ++  K+  G     +  +  ++  +  +  T  Q  
Sbjct: 496 WKALKQKTKARVKEIAFNLIQLYAKR--KEAQGYAFAHDSYMQNELEASFLYEDTPDQSK 553

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  ++  DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LA QHY+
Sbjct: 554 ATAEVKADMESAKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTVLAFQHYQ 613

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + ++ +        ++  LE +A GQ  I+IGTH +  + +QY  L L+I
Sbjct: 614 TFSQRMKDFPVRIDYLNRFRTAKEKKIILEELAKGQLDIVIGTHQIVGEKVQYKDLGLLI 673

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S I   P  R PI 
Sbjct: 674 VDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLSVINTPPPNRYPID 733

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + +IP +  + + + ++  +  G + +++  ++E  +E            L     + IA
Sbjct: 734 SQVIPFSE-EVIRDGIRYEIQRGGQVFFMHNRVENIQEVAG-----MIQRLLPD--ARIA 785

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E  M +F  G   +L+ATT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 786 IGHGQMDGKKLEETMLAFMEGAYDVLVATTIIESGLDVPNANTIFINNAHNFGLSDLHQM 845

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   +S ++  R+  +    D   G  IA +DL+ R  G++L
Sbjct: 846 RGRVGRSNKKAFCYFITPPLIAMSDDARKRIEAIAQFSDLGSGLNIAMKDLEIRGAGDLL 905

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG    +      +  +L+ A  + K 
Sbjct: 906 GGEQSGFINEIGFD--TYQKILQEAITELKE 934


>gi|89889977|ref|ZP_01201488.1| transcription-repair coupling factor [Flavobacteria bacterium
           BBFL7]
 gi|89518250|gb|EAS20906.1| transcription-repair coupling factor [Flavobacteria bacterium
           BBFL7]
          Length = 1112

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 142/443 (32%), Positives = 228/443 (51%), Gaps = 18/443 (4%)

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
             +  L  +++ K   G     +G +  ++  +  +  T  Q +A  D+  DM     M 
Sbjct: 515 FDLIQLYAKRRAK--KGFQFEPDGYLQNELEASFIYEDTPDQSAATADVKADMESDRPMD 572

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++ GDVG GKT VA+ A   A  +G Q  ++ P  ILA QH +  K+   N  + V+ +
Sbjct: 573 RLVCGDVGFGKTEVAIRAAFKAAVSGKQVAVLVPTTILAFQHAKTFKERLGNLPVTVDYL 632

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
                   R+  LE +A+GQ  I+IGTH L   SIQ+  L L+I+DE+ +FGV  + KL 
Sbjct: 633 NRFRTAKERKGVLEGLANGQVDIVIGTHQLVSKSIQFKDLGLLIIDEEQKFGVGVKDKLK 692

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   L +TATPIPRTL  + +   D+S I   P  R PI++ +I  +  + + + +
Sbjct: 693 TLKENIDTLTLTATPIPRTLQFSLMAARDLSVIKTAPPNRHPIESRVIRFSE-ETIRDAV 751

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              +S G + +++  +IE  KE                  + + I HG+M     E +M 
Sbjct: 752 SYEISRGGQVFFVHNRIENIKEVAGMIQ-------RSVPDARVGIGHGQMDGKKLEELML 804

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SF NG   +L+ATT+IE G+DV +A+ I I NA +FGL+ LHQ+RGRVGR  + + C  +
Sbjct: 805 SFMNGDFDVLVATTIIESGLDVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFI 864

Query: 596 YHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMP---KFLIA 647
             P   ++ ++  R+  ++       GF IA +DL+ R  G+ILG +QSG      F   
Sbjct: 865 TPPYDMMTDDARKRIQAVETFSELGSGFNIAMKDLEIRGAGDILGGEQSGFMNEIGFDTY 924

Query: 648 QPELHDSLLEIARKDAKHILTQD 670
           Q  L++++ E+   + K +  +D
Sbjct: 925 QKILNEAIEELKENEFKDLYEED 947


>gi|229825975|ref|ZP_04452044.1| hypothetical protein GCWU000182_01339 [Abiotrophia defectiva ATCC
            49176]
 gi|229789717|gb|EEP25831.1| hypothetical protein GCWU000182_01339 [Abiotrophia defectiva ATCC
            49176]
          Length = 1184

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 151/484 (31%), Positives = 244/484 (50%), Gaps = 20/484 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     +       +A  +  L  ++Q ++        +    Q+     P+  T  Q +
Sbjct: 578  WKKTKSKVRQSISEIARDLVELYAKRQQEQG--FRYGKDTVWQQEFEEMFPYDETDDQLN 635

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AIKD+  DM     M R++ GDVG GKT VA+ A   AV  G Q V++ P  ILA QHY 
Sbjct: 636  AIKDVKADMESIKIMDRLVCGDVGFGKTEVAIRAAFKAVSEGKQVVMLVPTTILAGQHYT 695

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               K  QN  I VE ++     A  +K  E++  G   I+IGTH +    I+Y  L L+I
Sbjct: 696  TFSKRMQNFPITVEFLSRFKSAAETKKIKEKLKAGLIDIVIGTHKVLSAEIKYKDLGLLI 755

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV  + K+ +      VL ++ATPIPRTL ++ +G  D+S + E P  R PI+
Sbjct: 756  IDEEQRFGVSHKEKIKKLRENVDVLTLSATPIPRTLHMSLVGIRDMSVLEEPPVDRIPIQ 815

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSI 518
            T ++  +  + + E +   +    + Y++  ++          + ER   L E    + +
Sbjct: 816  TYVLEHDD-EIIREAINREIGRNGQVYYVYNRVS--------GIDERAAKLAELIPGARV 866

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            +  HG+M++ + E +M  F NG   +L++TT+IE G+D+ + + III++A+  GL+QL+Q
Sbjct: 867  SFAHGQMNERELERIMIEFINGEIDVLVSTTIIETGLDISNVNTIIIDDADKMGLSQLYQ 926

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    S   L+Y     L + +  RL+ +K   D   GF IA +DL+ R  G +
Sbjct: 927  LRGRVGRSSRTSFAFLMYKRDRMLKEIAEKRLAAIKEFTDLGSGFKIAMKDLEIRGAGNL 986

Query: 634  LGIKQSGMPKFLIAQPELHDSLL-EIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            LG  QSG  + +     L+  +L E  ++     +  D   T+V  ++   +   Y  NE
Sbjct: 987  LGKSQSGHMEAVGYD--LYCKMLNEEVKRLKGEKVAADEFETAVDIEASAYIPADYIRNE 1044

Query: 693  AFQF 696
              + 
Sbjct: 1045 VARL 1048


>gi|138893727|ref|YP_001124180.1| transcription-repair coupling factor [Geobacillus thermodenitrificans
            NG80-2]
 gi|134265240|gb|ABO65435.1| Transcription-repair coupling factor [Geobacillus thermodenitrificans
            NG80-2]
          Length = 1177

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 131/435 (30%), Positives = 225/435 (51%), Gaps = 15/435 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            + +  + +   G   + + ++ ++     P+  T+ Q  +I++I +DM  +  M R+L G
Sbjct: 592  IKLYAEREASKGYAFSQDTEMQREFEAAFPYQETEDQLRSIEEIKRDMESEKPMDRLLCG 651

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VAL A   A+  G Q   + P  ILAQQHYE +++  Q   I V ++     
Sbjct: 652  DVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGFPINVGVLNRFRT 711

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            +  + + ++ +  G   ++IGTH L    +++  L L+I+DE+ RFGV  + K+ Q    
Sbjct: 712  RKQQAETIKGLKDGTIDMVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVAHKEKIKQLKAN 771

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL +TATPIPRTL ++ +G  D+S I   P  R P++T ++     + V E ++  L+
Sbjct: 772  IDVLTLTATPIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEY-TPELVKEAIERELA 830

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
               + +++   IE+          E    L     + +   HGRMS+ + ES + +F  G
Sbjct: 831  RDGQVFFLYNHIEDID-----LRAEEIAQLVPE--ARVTFAHGRMSEAELESTILAFLEG 883

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
               +L+ TT+IE G+D+ + + +I+ +A+  GL+QL+QLRGRVGR   ++     Y    
Sbjct: 884  QYDVLVTTTIIETGVDIPNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDK 943

Query: 600  -LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             L++ +  RL  +K       GF IA  DL  R  G ILG +Q G    +     L+  +
Sbjct: 944  VLNETAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNILGAEQHGFIDSVGFD--LYSQM 1001

Query: 656  LEIARKDAKHILTQD 670
            L+ A +  + +  ++
Sbjct: 1002 LKEAIEKRRGLKQEE 1016


>gi|167463169|ref|ZP_02328258.1| transcription-repair coupling factor [Paenibacillus larvae subsp.
            larvae BRL-230010]
          Length = 1150

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 133/457 (29%), Positives = 231/457 (50%), Gaps = 17/457 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +  +  + +A  +  L   +Q    +G   + +     +     P+  T  Q 
Sbjct: 560  EWARVKNKVRSSVKDIADDLIKLYAERQS--TLGYAFSKDSTYQHEFEAMFPYDETHDQL 617

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI++I +DM +   M R+L GDVG GKT VA+ A   A   G Q  ++ P  ILAQQHY
Sbjct: 618  RAIEEIKKDMEKPLPMDRLLCGDVGYGKTEVAIRAAFKAAIDGKQVAVLVPTTILAQQHY 677

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  ++   +    +++++    +  + + ++ I  G   I+IGTH L    +++ +L L+
Sbjct: 678  ETFRERFADFPFNIQVMSRFRSKKEQNETIKSIKAGTVDIVIGTHRLLSQDVKFKELGLL 737

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV  + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 738  IVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 797

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++       V E ++  L+   + Y++  +++         + ++ + L     + +
Sbjct: 798  QTYVLEHTPT-LVREAIERELAREGQVYYLFNRVQ-----GITQIADQISMLVPD--ARV 849

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++ HG+MS+ + E  +  F +G   +L++T++IE G+D+ + + +I+ +A+  GL+QL+Q
Sbjct: 850  SVAHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQ 909

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+     Y     L++ +  RL  +K       GF IA  DL  R  G +
Sbjct: 910  LRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLAIRGAGNL 969

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            LG +Q G         +L+  +L       K  +  +
Sbjct: 970  LGAEQHGFI--ASVGFDLYSQMLSEEINKRKQEMEGE 1004


>gi|161831377|ref|YP_001597022.1| transcription-repair coupling factor [Coxiella burnetii RSA 331]
 gi|161763244|gb|ABX78886.1| transcription-repair coupling factor [Coxiella burnetii RSA 331]
          Length = 1157

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 158/493 (32%), Positives = 242/493 (49%), Gaps = 20/493 (4%)

Query: 199  FPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
              S     +  H P +K    +W     +   +   +A ++  +  R+Q     G   ++
Sbjct: 542  LISRYAGADASHAPLQKLGSKQWEKIKEKTQKHIRDVAAELLDIYSRRQAA--TGFTFSI 599

Query: 258  EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
              K      +  PF  T  Q +AI D++ DMS K  M R++ GDVG GKT VA+ A   A
Sbjct: 600  PEKEYSLFRQAFPFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIA 659

Query: 318  VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
            V+   Q  ++ P  +LA+QH+   +    +  + +  I+    Q  R++  + +A G+  
Sbjct: 660  VQNNKQVAVLVPTTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKID 719

Query: 378  IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            IIIGTH L    I++  L L+IVDE+HRFGV Q+ ++        +L +TATPIPRTL +
Sbjct: 720  IIIGTHKLLSKDIRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNM 779

Query: 438  TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +  G  D+S IT  PA R  +KT +   + +  + E +      G + Y++   +     
Sbjct: 780  SLSGIRDLSLITTPPAKRLSVKTFVHDYSPV-LIREAILRENLRGGQVYFLHNDVATLAA 838

Query: 498  SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                   E+  ++     + +AI HG+M + D E VM  F +    LL+ TT+IE GID+
Sbjct: 839  -----TAEKLRTIIPE--ARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDI 891

Query: 558  VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE 615
              A+ III  A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RLS +   +
Sbjct: 892  PTANTIIINRADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADAEKRLSAISQLD 951

Query: 616  D---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            D   GF +A  DL+ R  GE+LG++QSG    +     L   LLE A    K    ++P 
Sbjct: 952  DLGVGFNLATHDLEIRGAGELLGVEQSGQIHDIGFSLYL--ELLEEAVSALKA--GREPQ 1007

Query: 673  LTSVRGQSIRILL 685
                      I L
Sbjct: 1008 FEKPLHAVSEIDL 1020


>gi|165923977|ref|ZP_02219809.1| transcription-repair coupling factor [Coxiella burnetii RSA 334]
 gi|165916585|gb|EDR35189.1| transcription-repair coupling factor [Coxiella burnetii RSA 334]
          Length = 1157

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 158/493 (32%), Positives = 243/493 (49%), Gaps = 20/493 (4%)

Query: 199  FPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
              S     +  H P +K    +W     +   +   +A ++  +  R+Q     G   ++
Sbjct: 542  LISRYAGADASHAPLQKLGSKQWEKIKEKTQKHIRDVAAELLDIYSRRQAA--TGFTFSI 599

Query: 258  EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
              K      +  PF  T  Q +AI D++ DMS K  M R++ GDVG GKT VA+ A   A
Sbjct: 600  PEKEYSLFRQAFPFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIA 659

Query: 318  VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
            V+   Q  ++ P  +LA+QH+   +    +  + +  I+    Q  R++  + +A G+  
Sbjct: 660  VQNNKQVAVLVPTTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKID 719

Query: 378  IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            IIIGTH L    I++  L L+IVDE+HRFGV Q+ ++        +L +TATPIPRTL +
Sbjct: 720  IIIGTHKLLSKDIRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNM 779

Query: 438  TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +  G  D+S IT  PA R  +KT +   + +  + E +      G + Y++   +     
Sbjct: 780  SLSGIRDLSLITTPPAKRLSVKTFVHYYSPV-LIREAILRENLRGGQVYFLHNDVATLAA 838

Query: 498  SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                   E+  ++     + +AI HG+M + D E VM  F +    LL+ TT+IE GID+
Sbjct: 839  -----TAEKLRTIIPE--ARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDI 891

Query: 558  VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE 615
              A+ III  A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RLS +   +
Sbjct: 892  PTANTIIINRADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADAEKRLSAISQLD 951

Query: 616  D---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            D   GF +A  DL+ R  GE+LG++QSG    +     L   LLE A    K    ++P 
Sbjct: 952  DLGVGFNLATHDLEIRGAGELLGVEQSGQIHDIGFSLYL--ELLEEAVSALKA--GREPQ 1007

Query: 673  LTSVRGQSIRILL 685
                   +  I L
Sbjct: 1008 FEKPLHAASEIDL 1020


>gi|219853470|ref|YP_002470592.1| hypothetical protein CKR_0127 [Clostridium kluyveri NBRC 12016]
 gi|219567194|dbj|BAH05178.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1183

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 143/452 (31%), Positives = 230/452 (50%), Gaps = 18/452 (3%)

Query: 231  DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            +E+    I L  +R   K       + +    ++     P+  T  Q S I+DI  DM  
Sbjct: 599  EEMAEDLIKLYAIRSTLKG---YKYSKDTIWQKQFEDEFPYEETPDQLSTIQDIKMDMES 655

Query: 291  KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
               M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY    +   +  +
Sbjct: 656  DKVMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHYNNFIQRFSDFPV 715

Query: 351  IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +++I+     A ++  ++ +  G   ++IGTH + Q  +Q+  L L+I+DE+ RFGV  
Sbjct: 716  KIDMISRFKTAAQQKATIKAVKIGDVDVLIGTHRILQKDVQFKDLGLLIIDEEQRFGVSH 775

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            + K+ Q      VL ++ATPIPRTL ++ +G  DIS I   P  R PI+T ++  N    
Sbjct: 776  KEKIKQIRKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPDERYPIQTYVVEYND-QL 834

Query: 471  VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            + + +   LS G + Y++  ++E  KE            L       +A+ HG+M + + 
Sbjct: 835  IRDAVLRELSRGGQVYFVYNRVENIKEMASY-----IAKLIPE--GKVAVAHGQMQEREL 887

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E ++  F      +L++TT+IE G+D+ + + ++I +A+  GL+QL+QLRGRVGR   I+
Sbjct: 888  EGIIMDFMQNKYDILVSTTIIETGMDIQNVNTMVIYDADKMGLSQLYQLRGRVGRTNRIA 947

Query: 591  SCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
             C L Y     L + +  RL V+K       GF IA +DL+ R  G ++G  Q G    +
Sbjct: 948  YCYLSYRKDKVLKEVAEKRLKVIKEFTELGSGFKIALKDLEIRGAGNMMGSSQHGHMAAV 1007

Query: 646  IAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
                 L+  +LE + K  K  + ++P  T+V 
Sbjct: 1008 GYD--LYCRMLEDSIKLIKGEIDKEPVETTVE 1037


>gi|153952805|ref|YP_001393570.1| hypothetical protein CKL_0152 [Clostridium kluyveri DSM 555]
 gi|146345686|gb|EDK32222.1| Mfd [Clostridium kluyveri DSM 555]
          Length = 1173

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 143/452 (31%), Positives = 230/452 (50%), Gaps = 18/452 (3%)

Query: 231  DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            +E+    I L  +R   K       + +    ++     P+  T  Q S I+DI  DM  
Sbjct: 589  EEMAEDLIKLYAIRSTLKG---YKYSKDTIWQKQFEDEFPYEETPDQLSTIQDIKMDMES 645

Query: 291  KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
               M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY    +   +  +
Sbjct: 646  DKVMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHYNNFIQRFSDFPV 705

Query: 351  IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             +++I+     A ++  ++ +  G   ++IGTH + Q  +Q+  L L+I+DE+ RFGV  
Sbjct: 706  KIDMISRFKTAAQQKATIKAVKIGDVDVLIGTHRILQKDVQFKDLGLLIIDEEQRFGVSH 765

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            + K+ Q      VL ++ATPIPRTL ++ +G  DIS I   P  R PI+T ++  N    
Sbjct: 766  KEKIKQIRKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPDERYPIQTYVVEYND-QL 824

Query: 471  VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            + + +   LS G + Y++  ++E  KE            L       +A+ HG+M + + 
Sbjct: 825  IRDAVLRELSRGGQVYFVYNRVENIKEMASY-----IAKLIPE--GKVAVAHGQMQEREL 877

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E ++  F      +L++TT+IE G+D+ + + ++I +A+  GL+QL+QLRGRVGR   I+
Sbjct: 878  EGIIMDFMQNKYDILVSTTIIETGMDIQNVNTMVIYDADKMGLSQLYQLRGRVGRTNRIA 937

Query: 591  SCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
             C L Y     L + +  RL V+K       GF IA +DL+ R  G ++G  Q G    +
Sbjct: 938  YCYLSYRKDKVLKEVAEKRLKVIKEFTELGSGFKIALKDLEIRGAGNMMGSSQHGHMAAV 997

Query: 646  IAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
                 L+  +LE + K  K  + ++P  T+V 
Sbjct: 998  GYD--LYCRMLEDSIKLIKGEIDKEPVETTVE 1027


>gi|94310893|ref|YP_584103.1| transcription-repair coupling factor [Cupriavidus metallidurans CH34]
 gi|93354745|gb|ABF08834.1| transcription-repair coupling factor [Cupriavidus metallidurans CH34]
          Length = 1150

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 154/472 (32%), Positives = 234/472 (49%), Gaps = 19/472 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++    P+    K  +    +  F  T  Q 
Sbjct: 557  QWDKAKRRAAQQIRDTAAELLNLYARRALREGFAFPLQP--KDYEAFAESFGFEETPDQA 614

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QH+
Sbjct: 615  AAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVAMLAPTTLLAEQHF 674

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +        + +  ++    +     A+++I  G   I+IGTH L  D +++ +L LV
Sbjct: 675  QTLSDRFAEWPVRIVELSRFKTKKEIDAAIKQINEGTVDIVIGTHKLLSDEVKFQRLGLV 734

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 735  IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 794

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +   +   L     + I
Sbjct: 795  KTFV-RREEDGVIREAILRELKRGGQVYFLHNEVETIE-----NKRAKLAELVPE--ARI 846

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F +    +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQ
Sbjct: 847  AVAHGQMHERELERVMRDFVSRRDNILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQ 906

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H    L++ +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 907  LRGRVGRSHHQAYAYLLVHDVEGLTRQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV 966

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG KQSG    +  Q  L+  +L  A K  K    ++PDL +    +  I L
Sbjct: 967  LGDKQSGEIHEIGFQ--LYTDMLNAAVKSLKA--GKEPDLMAPLAATTEINL 1014


>gi|313894846|ref|ZP_07828406.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312976527|gb|EFR41982.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 1094

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 161/581 (27%), Positives = 266/581 (45%), Gaps = 44/581 (7%)

Query: 106 FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL-PT 164
           F R    L+     G +I         ++   +    Y+ H S          V +L   
Sbjct: 405 FGRHKAKLRRSAGAGERI---------RHFREIAPGDYVVHVSH--GIGKYLGVETLEVA 453

Query: 165 GLSVDLFKKIIVEALSRLPVLPEWIEKD---LLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
           G+  D         +        ++  D   LLQK        A        +    +W 
Sbjct: 454 GVHRDYLH------IQYGGDDKLFVPTDQVGLLQKY-----IGAEGAAPRLHRMGTADWA 502

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
               +     E +A  +  +  +++     G     +  +  +     P+  T+ Q  AI
Sbjct: 503 RARAKAQKSVEDIADHLLEIYAKRKLA--AGHAFTPDDAMQHEFEEAFPYEETEDQLRAI 560

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           ++I +DM  +  M R+L GDVG GKT VA+ A   A   G Q  ++ P  +LAQQHY+  
Sbjct: 561 EEIKRDMESERPMDRLLCGDVGFGKTEVAVRAAFKAAMDGFQVAVLVPTTVLAQQHYQTF 620

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-IQYYKLILVIV 400
                +    V+++        + + L  +  G+  I+IGTHA+   + + + KL L+IV
Sbjct: 621 AARFADFAPKVDVVCRFRTPREQAETLREVERGRVDILIGTHAILNRTRVHFRKLGLLIV 680

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+ RFGV Q+ ++ + A    VL ++ATPIPRTL ++  G  D+S I   PA R P+++
Sbjct: 681 DEEQRFGVTQKERIKEFAAGVDVLTLSATPIPRTLHMSLAGARDMSIIETPPADRLPVQS 740

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            ++  +    +   ++  LS G + Y+I  ++E         + E    L     + IA 
Sbjct: 741 YVVESSD-AMMRGAIERELSRGGQVYFIYNRVESID-----RMREHLLRLVPE--ARIAT 792

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG+M++   E VM  F  G   +L+AT++IE GIDV +A+ +II +A+ FGL+QL+Q+R
Sbjct: 793 AHGQMNEDILEQVMMDFYEGHYDILLATSIIENGIDVANANTVIIYDADRFGLSQLYQMR 852

Query: 581 GRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILG 635
           GRVGR  +++     Y     LS+ +  RL  +K       GF IA  DL+ R  G +LG
Sbjct: 853 GRVGRSAKMAFAYFTYRRDKVLSETAEKRLQAMKEFAQLGSGFKIAMRDLEIRGAGSLLG 912

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            +Q G         E++  LLE A    + +  + P++  V
Sbjct: 913 AQQHGHI--AGVGFEMYVKLLEEAVAKRRGVAKESPEVEPV 951


>gi|308233919|ref|ZP_07664656.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829]
 gi|328943400|ref|ZP_08240865.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829]
 gi|327491369|gb|EGF23143.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829]
          Length = 1198

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 133/455 (29%), Positives = 228/455 (50%), Gaps = 17/455 (3%)

Query: 215  AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
                +W+          + +A  +  L  R+      G   + +    + +  + P++ T
Sbjct: 567  LNSADWSRACTRARKSAQKMAFDLVDLYTRRS--TIKGFSFSFDTPAQEDMETSFPYTLT 624

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q  A+ DI  DM     M R+L GDVG GKT VAL A     +   Q +++ P  ILA
Sbjct: 625  RDQARALDDIKADMQSATPMDRLLCGDVGFGKTEVALRAAFKCCQDHKQVMVLCPTTILA 684

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            QQH+E   +     ++ V +++  +  A +++ LE  + G   ++IGTH L    +    
Sbjct: 685  QQHFETFYERFTPFEVNVRVLSRFIKPAEQKRTLEGFSTGDVDVLIGTHRLLSSDVNPSN 744

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+ RFGVQ + +L        VL ++ATPIPRT+ +   G  D+S I   PAG
Sbjct: 745  LGLIIIDEEQRFGVQHKEQLKNIREQVDVLTLSATPIPRTMQMAMSGVRDMSLILSAPAG 804

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            RKP++  +   +  D + + +++ L+   + Y++  +++   ++  R             
Sbjct: 805  RKPVRVHVGEWDS-DLISDAIRLELARKGQVYYVSNRVKTIDDALERVH-------ACAP 856

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + + + HG+MS    E VM  F+     +L+ATT+IE GID    + +IIE+++  GLA
Sbjct: 857  EARVGVAHGQMSPSQIEEVMLLFEEHEIDVLVATTIIESGIDNPHTNTLIIEDSQRLGLA 916

Query: 575  QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL---KNTEDGFLIAEEDLKQRK 629
            QL+QL+GRVGRG   +    ++ P  PL++ +  RL  +   +    G  IA +DL+ R 
Sbjct: 917  QLYQLKGRVGRGRVQAYAYFMFPPTEPLTEEARRRLEAIYEHQELGSGMRIAMKDLEIRG 976

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             G ++G +Q G         +L   +L  A ++AK
Sbjct: 977  AGSLMGAEQHG--NLSGVGFDLFTQMLSDAVREAK 1009


>gi|73541054|ref|YP_295574.1| transcription-repair coupling factor [Ralstonia eutropha JMP134]
 gi|72118467|gb|AAZ60730.1| Transcription-repair coupling factor [Ralstonia eutropha JMP134]
          Length = 1150

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 155/472 (32%), Positives = 235/472 (49%), Gaps = 19/472 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R         A ++  L  R+  ++    P++   K  +    +  F  T  Q 
Sbjct: 557  QWDKAKRRAAQQIRDTAAELLNLYARRAAREGFAFPLSP--KDYETFAESFGFEETPDQA 614

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QH+
Sbjct: 615  AAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVAMLAPTTLLAEQHF 674

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +        + +  ++    +     A+++I  G   I+IGTH L  D +++ +L LV
Sbjct: 675  QTLSDRFAEWPVRIVELSRFKTKKEIDAAVKQINEGTVDIVIGTHKLLSDEVKFQRLGLV 734

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 735  IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 794

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +   +   L     + I
Sbjct: 795  KTFV-RREEDGVIREAILRELKRGGQVYFLHNEVETIE-----NKRAKLAELVPE--ARI 846

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F +    +L+ TT+IE GIDV  A+ I+I  A+ FGLAQLHQ
Sbjct: 847  AVAHGQMHERELERVMRDFVSRRDNILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQ 906

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H    L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 907  LRGRVGRSHHQAYAYLLVHDVDGLTKQAGRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV 966

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG KQSG    +  Q  L+  +L  A K  K    ++PDL +    +  I L
Sbjct: 967  LGDKQSGEIHEIGFQ--LYTDMLNAAVKALKA--GKEPDLMAPLAATTEINL 1014


>gi|114565647|ref|YP_752801.1| transcription-repair coupling factor [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336582|gb|ABI67430.1| Transcription-repair coupling factor - superfamily II helicase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 1073

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 133/444 (29%), Positives = 224/444 (50%), Gaps = 17/444 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++     + LA  +  L   ++ ++      + +     +     PF  T  Q  
Sbjct: 495 WERTRKKVAQSIQDLAEDLLQLYAHRESREG--YAFSPDTPWQSQFEDEFPFRETPDQLK 552

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI ++ +DM  +  M R++ GDVG GKT V L A   A+  G Q  I+ P  +LA+QH++
Sbjct: 553 AINEVKKDMETRRPMDRLVCGDVGYGKTEVFLRAAFKAIMDGKQVAILVPTTVLAEQHFQ 612

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +       ++E+++     + +++ +E +  G   I+I TH L    +++  L L++
Sbjct: 613 TFTERFAAYPAVIEVLSRFRSNSEQKRIVEDLQKGVVDIVIATHRLLSRDVKFKDLGLLV 672

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV Q+ K+        V+ ++ATPIPR+L +   G  D+S I   P  R PI 
Sbjct: 673 IDEEHRFGVAQKEKIKALKELVDVISLSATPIPRSLHMALTGLRDLSVIETPPPERYPIT 732

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T ++  N  + ++E +   +    + +++  +IE+        V E+ + L       IA
Sbjct: 733 TYVLEYNE-EIIVEAVMKEIERQGQVFFVHNRIEDIY-----RVKEQLDELFPGI--KIA 784

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HGRM + +   VM  F NG  +L + TT+IE G+D+ + + II++ A+  GLAQL+QL
Sbjct: 785 VGHGRMKEDELSRVMMDFVNGKYQLFLCTTIIESGLDMPNVNTIIVDEADKMGLAQLYQL 844

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR   ++   L Y P   +S+ S  RL+ ++       G  IA  DL+ R  G IL
Sbjct: 845 RGRVGRSHRLAYAYLTYRPDWVISEASQKRLNAIREFNELGSGMKIALRDLEIRGAGNIL 904

Query: 635 GIKQSGMPKFLIAQPELHDSLLEI 658
           G +Q G         +L+  LLE 
Sbjct: 905 GAEQHGYI--QAVGFDLYCRLLEQ 926


>gi|313884578|ref|ZP_07818339.1| transcription-repair coupling factor [Eremococcus coleocola
            ACS-139-V-Col8]
 gi|312620362|gb|EFR31790.1| transcription-repair coupling factor [Eremococcus coleocola
            ACS-139-V-Col8]
          Length = 1181

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 140/480 (29%), Positives = 245/480 (51%), Gaps = 26/480 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  A  E +A  +  L  +++ +   G   + +     +  +   F  T  Q 
Sbjct: 573  EWAKTKQKVQATVEDIADDLIKLYAKREAE--KGYRFSPDTPEQSEFEQAFGFVETPDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            ++ ++I  DM +   M R+L GDVG GKT VA+ A+  AV  G Q   + P  +LAQQHY
Sbjct: 631  TSSQEIKADMEKSRPMDRLLVGDVGYGKTEVAMRAIFKAVMDGKQVAFLVPTTVLAQQHY 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              ++    +    + +++  + +  +++ + ++  G   I++GTH +    I +  L L+
Sbjct: 691  NTLQARFNDWPFEIGLLSRFVSRVQQKETIAKLKSGAVSIVVGTHRILSKDIVFNDLGLL 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ +G  D+S I   P  R P+
Sbjct: 751  IVDEEQRFGVKHKERLKQLKAQVDVLTLTATPIPRTLHMSMIGIRDLSVIETPPNNRFPV 810

Query: 459  KTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-T 515
            +T I+  N   I   IE     ++ G + +++  ++            +R + + +    
Sbjct: 811  QTYIMERNEGAIKTAIE---REMARGGQCFYLYNRVATI--------YQRADEISQLVPQ 859

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + +A+ HG+MS+ + E+V+  F  G   +L+ TT+IE G+D+ +A+ + +++A+  GL+ 
Sbjct: 860  ARVAVAHGQMSETELETVLVDFIQGLYDVLVTTTIIETGVDIPNANTLFVDHADKMGLST 919

Query: 576  LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
            L+QLRGRVGR   ++   L+Y P   LS+ S  RL  ++   D   GF IA  DL  R  
Sbjct: 920  LYQLRGRVGRTHRVAYAYLMYEPFKQLSEVSEKRLKAIREFTDLGSGFKIAMRDLSIRGA 979

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            G +LG +QSG    +     L+  +L+ A    K I  +    +    Q+I   + +  Y
Sbjct: 980  GNLLGKQQSGFIDSVGYD--LYTQMLKEAVDQRKGIKKKQ---SQYESQAIEWNVDVDAY 1034


>gi|29654454|ref|NP_820146.1| transcription-repair coupling factor [Coxiella burnetii RSA 493]
 gi|29541721|gb|AAO90660.1| transcription-repair coupling factor [Coxiella burnetii RSA 493]
          Length = 1157

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 158/493 (32%), Positives = 242/493 (49%), Gaps = 20/493 (4%)

Query: 199  FPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
              S     +  H P +K    +W     +   +   +A ++  +  R+Q     G   ++
Sbjct: 542  LISRYAGADASHAPLQKLGSKQWEKIKEKTQKHIRDVAAELLDIYSRRQAA--TGFTFSI 599

Query: 258  EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
              K      +  PF  T  Q +AI D++ DMS K  M R++ GDVG GKT VA+ A   A
Sbjct: 600  PEKEYSLFRQAFPFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIA 659

Query: 318  VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
            V+   Q  ++ P  +LA+QH+   +    +  + +  I+    Q  R++  + +A G+  
Sbjct: 660  VQNNKQVAVLVPTTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKID 719

Query: 378  IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            IIIGTH L    I++  L L+IVDE+HRFGV Q+ ++        +L +TATPIPRTL +
Sbjct: 720  IIIGTHKLLSKDIRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNM 779

Query: 438  TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +  G  D+S IT  PA R  +KT +   + +  + E +      G + Y++   +     
Sbjct: 780  SLSGIRDLSLITTPPAKRLSVKTFVHDYSPV-LIREAILRENLRGGQVYFLHNDVATLAA 838

Query: 498  SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                   E+  ++     + +AI HG+M + D E VM  F +    LL+ TT+IE GID+
Sbjct: 839  -----TAEKLRTIIPE--ARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDI 891

Query: 558  VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE 615
              A+ III  A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RLS +   +
Sbjct: 892  PTANTIIINRADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADAEKRLSAISQLD 951

Query: 616  D---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            D   GF +A  DL+ R  GE+LG++QSG    +     L   LLE A    K    ++P 
Sbjct: 952  DLGVGFNLATHDLEIRGAGELLGVEQSGQIHDIGFSLYL--ELLEEAVSALKA--GREPQ 1007

Query: 673  LTSVRGQSIRILL 685
                      I L
Sbjct: 1008 FEKPLHAVSEIDL 1020


>gi|37523406|ref|NP_926783.1| transcription-repair coupling factor [Gloeobacter violaceus PCC
           7421]
 gi|35214410|dbj|BAC91778.1| transcription-repair coupling factor [Gloeobacter violaceus PCC
           7421]
          Length = 1154

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 136/451 (30%), Positives = 233/451 (51%), Gaps = 19/451 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++     + +A  +  L  R+   +E  IP   +    +++  + P+  T  Q  
Sbjct: 558 WEKTKQKVKKAIQKIAFDLLDLYARRA--QESRIPFPPDQPWQREMEESFPYPLTPDQAR 615

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+++  DM  +  M R++ GDVG GKT VA+ A   A+ +G Q  ++ P  +LA QHY 
Sbjct: 616 AIQEVKIDMESERPMDRLVCGDVGFGKTEVAIRAAFKALTSGVQCAVLVPTTVLASQHYH 675

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+      I + ++      + ++  L R+A G+  ++IGTH L    +++  L L++
Sbjct: 676 TFKERFAPYPISIGLLNRFRTASEKKDLLARLATGELDLVIGTHQLLGAGVRFQNLGLLV 735

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV Q+ K+    T   VL +TATPIPRTL ++  G  ++S IT  P  R+PIK
Sbjct: 736 IDEEQRFGVAQKEKIKTLKTQVDVLTLTATPIPRTLYMSLSGVREMSLITTPPPSRRPIK 795

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSI 518
           T + P +  + V   +   L  G + +++  +IE+ +        +    L      + +
Sbjct: 796 THLAPYD-PEHVRTAILQELGRGGQIFYVYNRIEDIQ--------DVAARLQAMIPTARV 846

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+M + + ES M +F  G   +L+ TT+IE G+D+   + I++ENA  FGL+QL+Q
Sbjct: 847 CVGHGQMEEGELESTMLAFSGGEFDILVCTTIIESGLDIPRVNTILVENAHQFGLSQLYQ 906

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR    +   + Y     L+  +  RL  ++       G+ +A  D++ R  G +
Sbjct: 907 LRGRVGRSGVQAHAWMFYKQEEALTDEARKRLRAIQEFTQLGSGYQLAMRDMEIRGVGNL 966

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG +QSG    +     L+  LLE A ++ +
Sbjct: 967 LGAEQSGQLNAIGFD--LYMELLEEAIQEIR 995


>gi|306992411|gb|ADN19322.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 441

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 162/446 (36%), Positives = 259/446 (58%), Gaps = 8/446 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  KKI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIKKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  KDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL LM++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLMKRSVKGKKGIKF--ERVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  A++ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAIKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASI 562
           F N    +L++TTVIEVG++V +A++
Sbjct: 416 FVNREIDILVSTTVIEVGVNVPNATV 441


>gi|220907244|ref|YP_002482555.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425]
 gi|219863855|gb|ACL44194.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425]
          Length = 1169

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 147/488 (30%), Positives = 249/488 (51%), Gaps = 21/488 (4%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
             + ++ R A  ++    + L   R Q +        ++    +++  + P+ PT  Q  A
Sbjct: 572  RTKSKVRKAIRKIAVDLLQLYAQRSQQQG---FAFPLDQPWQEELEESFPYQPTPDQVKA 628

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            I+D+ +DM     M R++ GDVG GKT VA+ A+  A+ AG Q   +AP  IL QQHY  
Sbjct: 629  IQDVKRDMESDRPMDRLVCGDVGFGKTEVAVRAIFKAITAGKQVAFLAPTTILTQQHYHT 688

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            +K+      I + ++        R+  L+R+  G+  +++GTH L    + +  L L+++
Sbjct: 689  LKERFAPYPIQIGLLNRFRSADERKNILQRLKTGELDVVVGTHQLLGKGVVFRDLGLLVI 748

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+ RFGV Q+ K+    T   VL ++ATPIPRTL +   G  ++S IT  P  R+PIKT
Sbjct: 749  DEEQRFGVNQKEKIKTLKTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKT 808

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIA 519
             + P +  + +   L+  L  G + +++ P++E  +        E    L E    + IA
Sbjct: 809  HLAPYD-PETIRSALRQELDRGGQVFYVVPRVEGIE--------EVAAKLREMVPSARIA 859

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M + + E+ M +F NG  ++L+ TT+IE G+D+   + I+IE+A+ FGL+QL+QL
Sbjct: 860  IAHGQMEEGELEATMLTFNNGEAEILVCTTIIESGLDIPRVNTILIEDAQKFGLSQLYQL 919

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   L Y     L++ +  RL  L+       G+ +A  D++ R  G +L
Sbjct: 920  RGRVGRAGIQAHAWLFYPKLNMLTEAARQRLRALQEFTQLGSGYQLAMRDMEIRGVGNLL 979

Query: 635  GIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
            G +Q G      F +    L +++ EI  ++   +     DL          +  L Q  
Sbjct: 980  GAEQHGQMDTVGFDLYMEMLDEAIAEIRGQEIPKVDDTQIDLNLTAFIPADYIPDLDQKM 1039

Query: 692  EAFQFIRA 699
             A++ + +
Sbjct: 1040 SAYRAVAS 1047


>gi|319787478|ref|YP_004146953.1| transcription-repair coupling factor [Pseudoxanthomonas suwonensis
            11-1]
 gi|317465990|gb|ADV27722.1| transcription-repair coupling factor [Pseudoxanthomonas suwonensis
            11-1]
          Length = 1166

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 149/469 (31%), Positives = 246/469 (52%), Gaps = 20/469 (4%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +WT   R+       +A ++  +  R+Q +   G+ ++++  + +      PF 
Sbjct: 562  HSLGGEQWTKAKRKAQEKVRDVAAELLEIQARRQAR--AGLALDIDRAMYEGFAAGFPFE 619

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI+ +L+D+     M R++ GDVG GKT VA+ A  AA   G Q  ++ P  +
Sbjct: 620  ETPDQHAAIEAVLRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASGGRQVAVLVPTTL 679

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            LA+QH+   +    +  + VE+++    +      LE++A G+  +I+GTH L Q  +++
Sbjct: 680  LAEQHFRNFRDRFADWPLKVEVLSRFKSKKEIEAELEKVARGEIDVIVGTHRLLQPDVKF 739

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L LVIVDE+ RFGV+Q+  L       H+L +TATPIPRTL +   G  D+S I   P
Sbjct: 740  KDLGLVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPP 799

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  ++T ++P +  +++ E  +  LS G + Y++   +E         + ++   L  
Sbjct: 800  PNRLAVQTFVVPWDD-NQLREAFQRELSRGGQLYFLHNDVES-----MGRMQKQLAELVP 853

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I + HG+M + + E VM  F+     +L+A+T+IE GID+ +A+ I+I  A+ FG
Sbjct: 854  E--ARIGVAHGQMPERELERVMLDFQKQRFNVLLASTIIESGIDIPNANTIVINRADKFG 911

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            LAQLHQLRGRVGR    +   LL  P    +S ++  RL  + + ++   GF +A  DL+
Sbjct: 912  LAQLHQLRGRVGRSHHRAYAYLLVPPDRRAMSPDAEKRLDAIASMDELGAGFTLATHDLE 971

Query: 627  QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             R  GE+LG  QSG          L+  LLE A +  +    + PDL +
Sbjct: 972  IRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIRQ--GKLPDLDA 1016


>gi|260664822|ref|ZP_05865673.1| transcription-repair coupling factor [Lactobacillus jensenii
            SJ-7A-US]
 gi|260561305|gb|EEX27278.1| transcription-repair coupling factor [Lactobacillus jensenii
            SJ-7A-US]
          Length = 1161

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 134/466 (28%), Positives = 235/466 (50%), Gaps = 24/466 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R   +  E +A  +  L   ++ +   G   + +  + +      P+  T  Q 
Sbjct: 561  QWAKTKRSVQSKVEDIADDLIKLYAARESE--KGFAFSKDNDLQKAFEDAFPYVETPDQL 618

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VA+ A   A++   Q   + P  ILAQQH+
Sbjct: 619  RSSNEIKADMEKPKAMDRLLVGDVGFGKTEVAIRAAFKAIQDNKQVAFLVPTTILAQQHF 678

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + I    ++  + V +++     A  ++ LE +  G+  +++GTH +    +++  L L+
Sbjct: 679  DNISDRFKDFPVNVALLSRFQSNAEVKEILEGLKVGKIDLVVGTHRILSKDVEFKDLGLL 738

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 739  IIDEEQRFGVKHKERLKELKNNVDVLTLTATPIPRTLHMSMVGVRDLSVMETPPVNRYPI 798

Query: 459  KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-S 516
            +T ++   ++  VI E     ++   + +++  +I +          E    LH+    +
Sbjct: 799  QTYVME--QLPSVIREACLREMARDGQIFYLHNRIGDID--------ETVEHLHQLVPEA 848

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             I  IHGRMS+     ++  F +    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL
Sbjct: 849  KIEAIHGRMSENQMADILYRFLHKQFDILVTTTIIETGIDMPNVNTLIIEDADHYGLSQL 908

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
            +QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G
Sbjct: 909  YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLEAIRDFTELGSGFKIAMRDLSIRGAG 968

Query: 632  EILGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHILTQDPDLT 674
             +LG +Q G    +        L D++   ARK    ++  + ++ 
Sbjct: 969  NMLGQQQHGFIDSVGYDLYAQMLDDAI--KARKGGHKLIKTNSEID 1012


>gi|238855038|ref|ZP_04645366.1| transcription-repair coupling factor [Lactobacillus jensenii 269-3]
 gi|282934824|ref|ZP_06340058.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
 gi|238832282|gb|EEQ24591.1| transcription-repair coupling factor [Lactobacillus jensenii 269-3]
 gi|281301096|gb|EFA93406.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
          Length = 1161

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 134/466 (28%), Positives = 235/466 (50%), Gaps = 24/466 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R   +  E +A  +  L   ++ +   G   + +  + +      P+  T  Q 
Sbjct: 561  QWAKTKRSVQSKVEDIADDLIKLYAARESE--KGFAFSKDNDLQKAFEDAFPYVETPDQL 618

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VA+ A   A++   Q   + P  ILAQQH+
Sbjct: 619  RSSNEIKADMEKPKAMDRLLVGDVGFGKTEVAIRAAFKAIQDNKQVAFLVPTTILAQQHF 678

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + I    ++  + V +++     A  ++ LE +  G+  +++GTH +    +++  L L+
Sbjct: 679  DNISDRFKDFPVNVALLSRFQSNAEVKEILEGLKVGKIDLVVGTHRILSKDVEFKDLGLL 738

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R PI
Sbjct: 739  IIDEEQRFGVKHKERLKELKNNVDVLTLTATPIPRTLHMSMVGVRDLSVMETPPVNRYPI 798

Query: 459  KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-S 516
            +T ++   ++  VI E     ++   + +++  +I +          E    LH+    +
Sbjct: 799  QTYVME--QLPSVIREACLREMARDGQIFYLHNRIGDID--------ETVEHLHQLVPEA 848

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             I  IHGRMS+     ++  F +    +L+ TT+IE GID+ + + +IIE+A+H+GL+QL
Sbjct: 849  KIEAIHGRMSENQMADILYRFLHKQFDILVTTTIIETGIDMPNVNTLIIEDADHYGLSQL 908

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
            +QLRGR+GR   ++    LY P   L++    RL  +++      GF IA  DL  R  G
Sbjct: 909  YQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLEAIRDFTELGSGFKIAMRDLSIRGAG 968

Query: 632  EILGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHILTQDPDLT 674
             +LG +Q G    +        L D++   ARK    ++  + ++ 
Sbjct: 969  NMLGQQQHGFIDSVGYDLYAQMLDDAI--KARKGGHKLIKTNSEID 1012


>gi|302871262|ref|YP_003839898.1| transcription-repair coupling factor [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574121|gb|ADL41912.1| transcription-repair coupling factor [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 1143

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 134/440 (30%), Positives = 229/440 (52%), Gaps = 18/440 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++     E++A  +  L  ++Q     G   + +    ++     P++ T+ Q 
Sbjct: 554 EWQKQKQKVRKSLEIVAKDLVELYAKRQL--GQGFKFSKDTVWQKEFEEKFPYTETEGQL 611

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I +DM  +  M RIL GDVG GKT VA+ A   AV    Q  ++ P  ILAQQHY
Sbjct: 612 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 671

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                  ++  + +E+++    +  ++K ++ +  G   I+IGTH L    +++  L L+
Sbjct: 672 MTFSARMKDFPVTIEVLSRLKSETQQKKIIKGLRKGTIDIVIGTHRLLSSDVKFKDLGLL 731

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+H+FGV+ + K+ +  T   VL +TATPIPRTL +  LG  D+S I + P  R P+
Sbjct: 732 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRFPV 791

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  N    + E +   +S G + +++  ++++ +        E    L      S+
Sbjct: 792 QTFVLEYNER-IIKEAILKEISRGGQVFYLYNRVKDIQ--------EVAAKLQNLVGDSV 842

Query: 519 --AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             A  HG+M + + E V+  F  G   +L+ TT+IE G+D+ + + +I+E+++  GLAQL
Sbjct: 843 KIACAHGQMEEEELEEVLIDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLAQL 902

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           +QLRGRVGR   ++     +     LS+ +  RL+ +K       GF IA  DL+ R  G
Sbjct: 903 YQLRGRVGRSSRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRGAG 962

Query: 632 EILGIKQSGMPKFLIAQPEL 651
            I+G  Q G    +     +
Sbjct: 963 SIVGKLQHGHINSVGYDMYI 982


>gi|256545180|ref|ZP_05472546.1| transcription-repair coupling factor - superfamily II helicase
            [Anaerococcus vaginalis ATCC 51170]
 gi|256399221|gb|EEU12832.1| transcription-repair coupling factor - superfamily II helicase
            [Anaerococcus vaginalis ATCC 51170]
          Length = 1164

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 140/441 (31%), Positives = 227/441 (51%), Gaps = 24/441 (5%)

Query: 231  DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            DE+    + L   R + K       + +    ++   +  +  T SQ  +I +I  DM  
Sbjct: 582  DEIADDLVELYAKRSKAKGH---AFSEDTTWQKEFEDSFIYEETDSQVRSINEIKDDMEN 638

Query: 291  KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
               M R+L GDVG GKT VAL A   A+  G Q   + P  ILA QHY  +K+  ++  +
Sbjct: 639  IKPMDRLLCGDVGYGKTEVALRAAFKAIMDGYQVCFLVPTTILASQHYSTMKERFKDYPV 698

Query: 351  IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
               +++  + +  + K ++ +  G+  II+GTH L  + I++  L L+I+DE+ RFGV+ 
Sbjct: 699  ECALLSRFVSKKEQDKNIKNLKSGKIDIIVGTHRLLSNDIKFKNLGLLIIDEEQRFGVRH 758

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--I 468
            + KL +      VL ++ATPIPRTL L+  G  D+S + E P  R P+ T ++  +   I
Sbjct: 759  KDKLKKLKENIDVLTLSATPIPRTLQLSLTGIRDMSTLDEPPERRLPVNTYVLEYDSSII 818

Query: 469  DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSD 527
               IE     L    + Y++  ++   ++         +N L E    ++IAI HG+MS 
Sbjct: 819  KRAIE---KELDRDGQVYFVYNRVYNIEKI--------YNELVELIPDANIAIAHGQMSA 867

Query: 528  IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             + E +M+ F NG   +L+ATT+IE G+D+ + + II+ +++  GL+QL+QL+GR+GR  
Sbjct: 868  KNLEKIMEDFVNGDIDILLATTIIETGMDIQNVNTIIVYDSDMMGLSQLYQLKGRIGRSS 927

Query: 588  EISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMP 642
              S     Y     L++    RL  +K+  D   G+ IA  DL+ R  G ILG  QSG  
Sbjct: 928  RSSYAYFTYAKGKVLTEIGEKRLKSIKDFSDFGSGYKIAMRDLELRGAGNILGESQSGQV 987

Query: 643  KFLIAQPELHDSLLEIARKDA 663
            + +     L+   L+ A   A
Sbjct: 988  EAIGYD--LYVKFLQQAVNKA 1006


>gi|313207139|ref|YP_004046316.1| transcription-repair coupling factor [Riemerella anatipestifer DSM
           15868]
 gi|312446455|gb|ADQ82810.1| transcription-repair coupling factor [Riemerella anatipestifer DSM
           15868]
          Length = 1119

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 137/482 (28%), Positives = 239/482 (49%), Gaps = 22/482 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +   +  A  + +A  +  L  ++  K   G     +  +  ++  +  +  T  QE 
Sbjct: 507 WKNLKNKTKAKVKQIAFDLIKLYAKR--KTAKGFAYTPDTYLQNELEASFLYEDTPDQEK 564

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+ +DM     M R++ GDVG GKT VA+ A   A   G Q  ++ P  ILA QHY 
Sbjct: 565 ATLDVKRDMEADTIMDRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVLVPTTILAFQHYR 624

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + +  +        +R+ LE++A G+  IIIGTH L  D +++  L L+I
Sbjct: 625 SFAERLKDFPVNISYLNRFRTAKQKRETLEKLAEGKIDIIIGTHQLASDKVKFKDLGLLI 684

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+H+FGV  + KL         L +TATPIPRTL  + +   D+S I   P  R+P++
Sbjct: 685 IDEEHKFGVSVKDKLKTLKANIDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVE 744

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +I  +  + + + +   L    + Y+I  +I+  K  +   +++R         + + 
Sbjct: 745 TQLIGFDE-EIIRDAISYELQRDGQVYFINNRIDNLK--DIAGMIQRL-----VPDARVI 796

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG+M     E  +  F  G   +L++TT++E G+DV +A+ I I +A+ FG+A +HQ+
Sbjct: 797 TGHGQMDGKQLEENILDFMEGRYDVLVSTTIVESGVDVPNANTIFINDAQRFGMADVHQM 856

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    + C L+  P   ++ ++  RL  ++   D   GF IA +DL+ R  G++L
Sbjct: 857 RGRVGRSNRKAFCYLITPPFDMVTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLL 916

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV-RGQSIRILLYLYQYNEA 693
           G +QSG    +    E +  ++    ++A   L  D +  S+   ++ R  L+    +  
Sbjct: 917 GAEQSGFINEM--GFETYQKIM----QEALEELQNDAEFESLFENEADRKKLFKSSKDVN 970

Query: 694 FQ 695
             
Sbjct: 971 ID 972


>gi|227432633|ref|ZP_03914609.1| transcription-repair coupling factor [Leuconostoc mesenteroides
            subsp. cremoris ATCC 19254]
 gi|227351603|gb|EEJ41853.1| transcription-repair coupling factor [Leuconostoc mesenteroides
            subsp. cremoris ATCC 19254]
          Length = 1179

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 141/466 (30%), Positives = 247/466 (53%), Gaps = 20/466 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A  +  L  +++ ++    P   +     K   +  +  T  Q 
Sbjct: 567  EWAKTKRQVAAKIEDIADDLLELYAKREAQQGYVFP--PDDHAQIKFDDSFGYPETPDQI 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I  DM +   M R+L GDVG GKT VAL A+  A  +G Q   +AP  IL QQHY
Sbjct: 625  RSIEEIKVDMQKLRPMDRLLVGDVGFGKTEVALRAVFKAAHSGKQVAFLAPTTILVQQHY 684

Query: 339  EF-IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E  + +++   +I + +++        +  +E++ + +  +++GTH L    + +  L L
Sbjct: 685  ETMLARFSDFPEIKIGVLSRFQTPTQNKMIIEQLQNHEIDVVVGTHRLLSKDVDFSDLGL 744

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +I+DE+ RFGV+ + +L Q  T+  VL +TATPIPRTL +  +G  D+S I   PA R P
Sbjct: 745  LIIDEEQRFGVKHKERLKQLRTSVDVLTLTATPIPRTLNMAMVGARDLSVIETPPANRYP 804

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            I+T ++ ++    V + ++  ++   + +++  ++ +      +        L    ++ 
Sbjct: 805  IQTYVLAMD-WKIVRDAIEKEIARNGQVFYLHNRVADLDRIVSQ-----IEELIP--SAR 856

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A IHG+MS+   ES++  F NG   +L+ TT+IE G+D+ +A+ +I+ENA+H GLAQL+
Sbjct: 857  VAAIHGQMSETQLESILYDFLNGQYDVLVTTTIIETGVDIPNANTLIVENADHMGLAQLY 916

Query: 578  QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++     Y      S+ +  RL  +++      GF IA  DL  R  G+
Sbjct: 917  QLRGRVGRSTRLAYAYFTYPFTRTPSEEAEKRLEAMRDFTELGSGFRIAMRDLSIRGAGD 976

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQDPDLTSV 676
            +LG +Q G    +     ++  +L+  +A+K  K + T  P+  + 
Sbjct: 977  LLGKQQHGFIDSVGYD--MYTQMLKDTVAQKQGKQVTTSQPETDAE 1020


>gi|83816849|ref|YP_444216.1| transcription-repair coupling factor [Salinibacter ruber DSM 13855]
 gi|83758243|gb|ABC46356.1| transcription-repair coupling factor [Salinibacter ruber DSM 13855]
          Length = 1142

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 147/460 (31%), Positives = 239/460 (51%), Gaps = 18/460 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
             +W    +      + +A  +  L  ++  K   G   + +    +++  +  F  T  
Sbjct: 523 SEQWEKKKQRTKDQVKEVARDLIKLYAKR--KASDGYAFSSDTTWQREMEASFEFEDTPD 580

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  A K + +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  ILAQQ
Sbjct: 581 QAEATKAVKRDMEEPVPMDRLVCGDVGFGKTEVAVRAAFKAVQDGKQVAMLVPTTILAQQ 640

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H++   +  +   + VE+++    +  + K LE++  GQ  I+IGTH +  D I +  L 
Sbjct: 641 HHDTFSERMERFPVNVEVLSRFRSRTEQSKVLEKLEKGQVDILIGTHRITSDDITFDDLG 700

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L++VDE+ RFGV+ + KL +   A   L +TATPIPRTL  + LG  D+S I   P  R+
Sbjct: 701 LLVVDEEQRFGVKTKEKLRKMREAIDTLTLTATPIPRTLQFSLLGARDLSLIETPPPNRQ 760

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PI T I   +  D + + +    S G + ++I  +++   E     V E   ++  +   
Sbjct: 761 PINTEIHTFDE-DVIRDAIVYETSRGGQVFFIHNRVKTIHE-----VAEMVRAMVPNV-- 812

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN-AEHFGLAQ 575
            + + HG+MS  + E VM  F N    +L++T++IE G+D+ +A+ +II +  EHFGL++
Sbjct: 813 RVGVGHGQMSASELEDVMLDFVNEKLDVLVSTSIIENGLDISNANTMIINHAGEHFGLSE 872

Query: 576 LHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKE 630
           LHQLRGRVGR +  + C LL      L+ ++  RL  ++   D   GF IA  DL  R  
Sbjct: 873 LHQLRGRVGRSQRKAFCHLLVPSVHGLTDDARERLKAVEQFSDLGSGFDIAMRDLDIRGA 932

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           G +LG +QSG  +      E +  +L+ A K+ +     D
Sbjct: 933 GSLLGAEQSGFIED--VGYETYHKILDQAVKELREEEFDD 970


>gi|113867469|ref|YP_725958.1| transcription-repair coupling factor [Ralstonia eutropha H16]
 gi|113526245|emb|CAJ92590.1| Transcription-repair coupling factor [Ralstonia eutropha H16]
          Length = 1149

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 154/472 (32%), Positives = 234/472 (49%), Gaps = 19/472 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L  R+  ++    P++   K  +    +  F  T  Q 
Sbjct: 556  QWDKAKRKAAQQIRDTAAELLNLYARRAAREGFAFPLSP--KDYETFAESFGFEETPDQA 613

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  ++AP  +LA+QH+
Sbjct: 614  AAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVAMLAPTTLLAEQHF 673

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + +        + +  ++    +     A+ +I  G   I+IGTH +  D +++ +L LV
Sbjct: 674  QTLSDRFAEWPVRIVELSRFKTKKEIDAAIRQINEGTVDIVIGTHKILSDQVRFERLGLV 733

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+  L        VL +TATPIPRTL +   G  D S I   P  R  I
Sbjct: 734  IIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 793

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +        + E +   L  G + Y++  ++E  +     +   R   L     + I
Sbjct: 794  KTFV-RREEDGVIREAILRELKRGGQVYFLHNEVETIE-----NKRARLAELVPE--ARI 845

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E VM  F      +L+ TT+IE GIDV  A+ I+I  ++ FGLAQLHQ
Sbjct: 846  AVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPTANTILIHRSDKFGLAQLHQ 905

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL H    L+K +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 906  LRGRVGRSHHQAYAYLLVHDVEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV 965

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG KQSG    +  Q  L+  +L  A K  K    ++PDL +    +  I L
Sbjct: 966  LGDKQSGEIHEIGFQ--LYTDMLNAAVKALKA--GKEPDLMAPLAATTEINL 1013


>gi|89900125|ref|YP_522596.1| transcription-repair coupling factor [Rhodoferax ferrireducens T118]
 gi|89344862|gb|ABD69065.1| transcription-repair coupling factor [Rhodoferax ferrireducens T118]
          Length = 1175

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 150/497 (30%), Positives = 230/497 (46%), Gaps = 20/497 (4%)

Query: 196  KKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            +    S          P  K    +W    R+        A ++  +  R+  ++     
Sbjct: 548  QLQLISRYTGVAADEAPLHKLGSGQWDKAKRKAAEQVRDSAAELLNIYARRALREG--HA 605

Query: 255  INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
                    +    +  F  T  Q +AI  ++QDM     M R++ GDVG GKT VAL A 
Sbjct: 606  FRYSAGDYEIFANDFGFEETADQSAAIHAVIQDMISPRPMDRLICGDVGFGKTEVALRAA 665

Query: 315  AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
              A+  G Q   +AP  +LA+QHY+ +        + V  ++          A++ IA G
Sbjct: 666  FIAITGGKQVAFLAPTTLLAEQHYQTLVDRFSKWPVKVAEMSRFRSAKEITAAMKGIADG 725

Query: 375  QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
               I++GTH L      +  L L+I+DE+HRFGV+ + ++        VL +TATPIPRT
Sbjct: 726  TIDIVVGTHKLLSKDTHFKDLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTATPIPRT 785

Query: 435  LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            L +   G  D+S I   P  R  IKT +        + E +   L  G + Y++  ++E 
Sbjct: 786  LGMALEGLRDLSVIATAPQRRLAIKTFVRTEG-AGVIREAVLRELKRGGQVYFLHNEVET 844

Query: 495  KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             +     +   +   L     + IA+ HG+M +   E+VM  F      LL+ +T+IE G
Sbjct: 845  IE-----NRRAKLEELLPE--ARIAVAHGQMPERQLEAVMRDFVAQRFNLLLCSTIIETG 897

Query: 555  IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV-- 610
            IDV  A+ I++  A+ FGLAQLHQLRGRVGR    +   L+      L+K +  RL    
Sbjct: 898  IDVPTANTIVMARADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDLEGLTKQAQQRLDAIQ 957

Query: 611  -LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
             ++    GF +A  DL+ R  GE+LG  QSG    L    +L++ +L  A +  K  +  
Sbjct: 958  QMEELGSGFYLAMHDLEIRGAGEVLGENQSGNM--LEVGFQLYNEMLSEAVRCLKAGI-- 1013

Query: 670  DPDLTSVRGQSIRILLY 686
            +PDL S    S  I L+
Sbjct: 1014 EPDLLSPLNVSTDINLH 1030


>gi|314949307|ref|ZP_07852650.1| transcription-repair coupling factor [Enterococcus faecium TX0082]
 gi|313644313|gb|EFS08893.1| transcription-repair coupling factor [Enterococcus faecium TX0082]
          Length = 1173

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 137/446 (30%), Positives = 232/446 (52%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  +  L   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVSSKIEDIADDLIKLYAARESE--KGYAFGPDDAYQKEFENAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 688  ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E +   +  G + +++  ++E  +       VE    L     + I
Sbjct: 808  QTYVMEKN-PGSIREAIHREMGRGGQVFYLYNRVETIE-----QKVEEIQELVPE--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  GYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G         +++  +L  A
Sbjct: 980  LGAQQHGFID--AVGFDMYSQMLSEA 1003


>gi|312128223|ref|YP_003993097.1| transcription-repair coupling factor [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778242|gb|ADQ07728.1| transcription-repair coupling factor [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 1141

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 134/440 (30%), Positives = 229/440 (52%), Gaps = 18/440 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++     E++A  +  L  ++Q     G   + +    ++     P++ T+ Q 
Sbjct: 554 EWQKQKQKVRKSLEVVAKDLVELYAKRQL--NKGFKFSKDTVWQKEFEERFPYTETEGQL 611

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I +DM  +  M RIL GDVG GKT VA+ A   AV    Q  ++ P  ILAQQHY
Sbjct: 612 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 671

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                  ++  + +E+++    +  ++K ++ +  G   I+IGTH L    +++  L L+
Sbjct: 672 MTFSARMKDFPVTIEVLSRLKNETQQKKIIKGLKEGTIDIVIGTHRLLSSDVKFKDLGLL 731

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+H+FGV+ + K+ +  T   VL +TATPIPRTL +  LG  D+S I + P  R P+
Sbjct: 732 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRYPV 791

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  N    + E +   +S G + +++  ++++ +        E    L      S+
Sbjct: 792 QTFVLEYNER-IIKEAILKEISRGGQVFYLYNRVKDIQ--------EVAAKLQNLVGDSV 842

Query: 519 --AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             A  HG+M + + E V+  F  G   +L+ TT+IE G+D+ + + +I+E+++  GLAQL
Sbjct: 843 KIACAHGQMEEEELEEVLIDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLAQL 902

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           +QLRGRVGR   ++     +     LS+ +  RL+ +K       GF IA  DL+ R  G
Sbjct: 903 YQLRGRVGRSSRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRGAG 962

Query: 632 EILGIKQSGMPKFLIAQPEL 651
            I+G  Q G    +     +
Sbjct: 963 SIVGKLQHGHINSVGYDMYI 982


>gi|225166092|ref|ZP_03727826.1| transcription-repair coupling factor [Opitutaceae bacterium TAV2]
 gi|224799663|gb|EEG18158.1| transcription-repair coupling factor [Opitutaceae bacterium TAV2]
          Length = 833

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 149/468 (31%), Positives = 230/468 (49%), Gaps = 16/468 (3%)

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
           LQ+    S     +    P+  K          R A    +     LL ++   + + G 
Sbjct: 176 LQESHLISRYVGLSKT-RPQLGKIGSNRWEKTRRAAEHATIDLAAELLRIQAAREAQPGH 234

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
             + +    Q+     PF+ T  Q  AI +   DM +   M R++ GDVG GKT VA+ A
Sbjct: 235 AFDPDNDWQQEFEAAFPFTETPDQLRAITETKADMERPRPMDRLICGDVGFGKTEVAIRA 294

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
              AV++G Q  ++ P  +LAQQH    ++      ++VE+++    +    + L   A 
Sbjct: 295 AFKAVQSGRQVALLVPTTVLAQQHLNTFRERMAGYPLVVEMVSRFRTRGEITRILAATAA 354

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           GQ  I++GTH +    + +  L LVI+DE+ RFGVQ + +L        VL M+ATPIPR
Sbjct: 355 GQVDILVGTHRILNKDVVFRDLGLVIIDEEQRFGVQHKERLKAMRATVDVLSMSATPIPR 414

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL +   G  D+S I   P  R PI+T++   +    V + ++  LS G + +++  +++
Sbjct: 415 TLYMAMTGARDMSVIETPPTNRHPIQTIVKTYDE-KLVTDAIRAELSRGGQVFYLHNRVQ 473

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                    V  R   L       IA  HG+MS+   E +M  F  G  ++L+ TT+IE 
Sbjct: 474 TID-----LVAARLAQLLPDV--KIATGHGQMSEHALERMMTEFVAGDYQVLVCTTIIET 526

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVL 611
           G+D+ + + IIIE A+ FGL+QL+QLRGRVGR +  +   LL   H  L   +  RL+ L
Sbjct: 527 GLDIPNCNTIIIEGADRFGLSQLYQLRGRVGRFKHQAYAYLLLHRHTRLMDVARERLNAL 586

Query: 612 KNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           +       GF IA  DL+ R  G +LG +QSG    +    EL+  LL
Sbjct: 587 RTHNQLGAGFRIAMRDLELRGAGNLLGPQQSGHI--VGVGFELYCQLL 632


>gi|315223854|ref|ZP_07865702.1| transcription-repair coupling factor [Capnocytophaga ochracea
           F0287]
 gi|314946184|gb|EFS98185.1| transcription-repair coupling factor [Capnocytophaga ochracea
           F0287]
          Length = 1109

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 134/455 (29%), Positives = 233/455 (51%), Gaps = 18/455 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++     + +A  +  L  ++  K+  G   + +  +  ++  +  +  T  Q  
Sbjct: 501 WKALKQKTKTRVKEIAFNLIQLYAKR--KESKGYAYSHDSYMQNELEASFLYEDTPDQSK 558

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  ++  DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LA QH++
Sbjct: 559 ATAEVKADMESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTVLAFQHFQ 618

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + ++ +        ++  LE +A+GQ  IIIGTH +  + + Y  L L+I
Sbjct: 619 TFSQRMKDFPVRIDYLNRFRTAKEKKIILEELANGQLDIIIGTHQIVGEKVAYKDLGLLI 678

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S I   P  R PI 
Sbjct: 679 VDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLSVINTPPPNRYPID 738

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + ++P +  + + + ++  +  G + +++  ++E  +E            L     + IA
Sbjct: 739 SQVVPFSE-EIIRDGIRYEIQRGGQVFFMHNRVENIQEVAG-----MIQRLLPD--ARIA 790

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E  M +F +G   +L+ATT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 791 IGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNAHNFGLSDLHQM 850

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   +S ++  R+  +    D   G  IA +DL+ R  G++L
Sbjct: 851 RGRVGRSNKKAFCFFITPPLVAMSDDARKRIEAIAQFSDLGSGLNIAMKDLEIRGAGDLL 910

Query: 635 GIKQSGMP---KFLIAQPELHDSLLEIARKDAKHI 666
           G +QSG      F   Q  L ++++E+   +   +
Sbjct: 911 GGEQSGFINELGFETYQKILQEAIVELKENEFSEL 945


>gi|28493149|ref|NP_787310.1| transcription-repair coupling factor [Tropheryma whipplei str. Twist]
 gi|28476189|gb|AAO44279.1| transcription-repair coupling factor [Tropheryma whipplei str. Twist]
          Length = 1291

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 137/483 (28%), Positives = 226/483 (46%), Gaps = 27/483 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A  +  L  R+      G   + +            ++ T+ QE
Sbjct: 692  DWALTKSRARKAISSIALDLVKLYSRRS--ITKGYAFSPDTPFQTHFENEFLYTETRDQE 749

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I  +  DM     M RI+ GDVG GKT +A+ A   AV+   Q  ++ P  +LA+QH 
Sbjct: 750  KTIVAVKADMENSKPMDRIISGDVGFGKTEIAMRAAFKAVQDNKQVAVLVPTTLLARQHI 809

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + +  ++    ++  +K +  I+ G   I+IGTH L    IQ+  L L+
Sbjct: 810  QTFCERFDKWPVTIASLSRFQSKSEIQKTICGISSGGIDIVIGTHMLLNKKIQFKDLGLL 869

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV  +  + +      +L M+ATPIPRTL ++ +G  +IS ++  P  R PI
Sbjct: 870  IIDEEHRFGVNHKEAIKKLKIGIDILAMSATPIPRTLEMSLMGIKEISTLSTPPENRMPI 929

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P  R  +VI  ++  +  G + ++I              V +R   L     + +
Sbjct: 930  LTHVGPY-RDKQVIAAVRREIIRGGQVFYIHNDTATIS-----RVAQRLEQLIPE--ARV 981

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               H ++++   E  +  F  G   +L+ TT+IE G+D  +A+ III++AE++GL+QLHQ
Sbjct: 982  VSAHAKLAERMLEKTVIDFWEGKYDILVCTTIIETGLDNANANTIIIDSAENYGLSQLHQ 1041

Query: 579  LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
            LRGRVGRG + +   L Y   L   +Y RL  +        G  IA +DL+ R  G +LG
Sbjct: 1042 LRGRVGRGTKRAYAYLFYTSTLKDTAYKRLEAIARNNHLGAGAQIAMKDLELRGAGSLLG 1101

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL------------TSVRGQSIRI 683
              QSG         +L+  ++  A  + K   ++  +L              V  + +RI
Sbjct: 1102 HAQSGHI--ASVGFDLYIRMVTDAISNFKGEQSRTNNLRLEIPVDASIPKAYVDSERLRI 1159

Query: 684  LLY 686
             LY
Sbjct: 1160 ELY 1162


>gi|294618628|ref|ZP_06698167.1| transcription-repair coupling factor [Enterococcus faecium E1679]
 gi|291595147|gb|EFF26485.1| transcription-repair coupling factor [Enterococcus faecium E1679]
          Length = 1173

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 137/446 (30%), Positives = 232/446 (52%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  +  L   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVSSKIEDIADDLIKLYAARESE--KGYAFGPDDAYQKEFENAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 688  ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E +   +  G + +++  ++E  +       VE    L     + I
Sbjct: 808  QTYVMEKN-PGAIREAIHREMGRGGQVFYLYNRVETIE-----QKVEEIQELVPE--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  GYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G         +++  +L  A
Sbjct: 980  LGAQQHGFID--AVGFDMYSQMLSEA 1003


>gi|169830290|ref|YP_001716272.1| transcription-repair coupling factor [Candidatus Desulforudis
            audaxviator MP104C]
 gi|169637134|gb|ACA58640.1| transcription-repair coupling factor [Candidatus Desulforudis
            audaxviator MP104C]
          Length = 1176

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 136/453 (30%), Positives = 233/453 (51%), Gaps = 21/453 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    +        +A ++  L   +Q     G     +    ++     PF  T  Q 
Sbjct: 573  EWARSKKRVREAVREMAQELLKLYAARQS--LPGYRFPADNPWQREFELAFPFEETPDQL 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  + +DM +   M R+L GDVG GKT VA+ A+  AV  G QA ++ P  +LAQQH 
Sbjct: 631  KAIMQVKKDMERPRPMDRLLCGDVGYGKTEVAMRAVFKAVTDGKQAAVLVPTTVLAQQHL 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +  ++      +++E+++       +++ L  +A G+  I+IGTH L QD +Q+  L L+
Sbjct: 691  QTFRERFNGYPVVIEMLSRFRSVREQKQVLADLAAGKVDIVIGTHRLVQDDVQFADLGLI 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV  + KL  +     V+ +TATPIPRTL ++ +G  D S +   P  R P+
Sbjct: 751  VVDEEQRFGVLHKEKLKLRHPNVDVITLTATPIPRTLYMSLVGIRDTSLLETPPLDRFPV 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TS 516
            +T ++  + +  + E +   L+ G + Y++  ++ E          +R     +     +
Sbjct: 811  QTFVVEEDPV-LIREAVGRELARGGQVYFVHNRVFEL---------DRVAGWLQELVPEA 860

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             IA+ HG+M +   E VM  F  G   +L+ TT+IE G+D+ + + ++++ A+  GLAQL
Sbjct: 861  RIAVAHGQMREDQLEQVMLDFVAGAYDVLVCTTIIETGLDITNVNTLVVKEADQLGLAQL 920

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            +QLRGRVGR   ++     +     L + +  RL  +++  D   GF +A+ DL+ R  G
Sbjct: 921  YQLRGRVGRSNRLAYAYFTFRRDRLLGEAAEKRLRAIRDFTDFGSGFRLAKRDLEIRGAG 980

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             +LG +Q G     +   E++  LLE + ++ K
Sbjct: 981  NLLGTEQHGNIS--VVGFEMYCRLLEESVRELK 1011


>gi|69245443|ref|ZP_00603438.1| Transcription-repair coupling factor [Enterococcus faecium DO]
 gi|257879854|ref|ZP_05659507.1| transcription-repair coupling factor [Enterococcus faecium 1,230,933]
 gi|257882580|ref|ZP_05662233.1| transcription-repair coupling factor [Enterococcus faecium 1,231,502]
 gi|257891695|ref|ZP_05671348.1| transcription-repair coupling factor [Enterococcus faecium 1,231,410]
 gi|257894170|ref|ZP_05673823.1| transcription-repair coupling factor [Enterococcus faecium 1,231,408]
 gi|258614282|ref|ZP_05712052.1| transcription-repair coupling factor [Enterococcus faecium DO]
 gi|260559527|ref|ZP_05831708.1| transcription-repair coupling factor [Enterococcus faecium C68]
 gi|261206678|ref|ZP_05921376.1| transcription-repair coupling factor [Enterococcus faecium TC 6]
 gi|289565039|ref|ZP_06445493.1| transcription-repair coupling factor [Enterococcus faecium D344SRF]
 gi|293563193|ref|ZP_06677649.1| transcription-repair coupling factor [Enterococcus faecium E1162]
 gi|293570115|ref|ZP_06681195.1| transcription-repair coupling factor [Enterococcus faecium E1071]
 gi|294614900|ref|ZP_06694791.1| transcription-repair coupling factor [Enterococcus faecium E1636]
 gi|294623704|ref|ZP_06702537.1| transcription-repair coupling factor [Enterococcus faecium U0317]
 gi|314938215|ref|ZP_07845515.1| transcription-repair coupling factor [Enterococcus faecium TX0133a04]
 gi|314943110|ref|ZP_07849909.1| transcription-repair coupling factor [Enterococcus faecium TX0133C]
 gi|314952240|ref|ZP_07855255.1| transcription-repair coupling factor [Enterococcus faecium TX0133A]
 gi|314992098|ref|ZP_07857548.1| transcription-repair coupling factor [Enterococcus faecium TX0133B]
 gi|314996281|ref|ZP_07861337.1| transcription-repair coupling factor [Enterococcus faecium TX0133a01]
 gi|68195825|gb|EAN10261.1| Transcription-repair coupling factor [Enterococcus faecium DO]
 gi|257814082|gb|EEV42840.1| transcription-repair coupling factor [Enterococcus faecium 1,230,933]
 gi|257818238|gb|EEV45566.1| transcription-repair coupling factor [Enterococcus faecium 1,231,502]
 gi|257828055|gb|EEV54681.1| transcription-repair coupling factor [Enterococcus faecium 1,231,410]
 gi|257830549|gb|EEV57156.1| transcription-repair coupling factor [Enterococcus faecium 1,231,408]
 gi|260074626|gb|EEW62947.1| transcription-repair coupling factor [Enterococcus faecium C68]
 gi|260079171|gb|EEW66864.1| transcription-repair coupling factor [Enterococcus faecium TC 6]
 gi|289163246|gb|EFD11092.1| transcription-repair coupling factor [Enterococcus faecium D344SRF]
 gi|291587487|gb|EFF19371.1| transcription-repair coupling factor [Enterococcus faecium E1071]
 gi|291592186|gb|EFF23804.1| transcription-repair coupling factor [Enterococcus faecium E1636]
 gi|291596919|gb|EFF28137.1| transcription-repair coupling factor [Enterococcus faecium U0317]
 gi|291604843|gb|EFF34321.1| transcription-repair coupling factor [Enterococcus faecium E1162]
 gi|313589525|gb|EFR68370.1| transcription-repair coupling factor [Enterococcus faecium TX0133a01]
 gi|313593312|gb|EFR72157.1| transcription-repair coupling factor [Enterococcus faecium TX0133B]
 gi|313595635|gb|EFR74480.1| transcription-repair coupling factor [Enterococcus faecium TX0133A]
 gi|313598169|gb|EFR77014.1| transcription-repair coupling factor [Enterococcus faecium TX0133C]
 gi|313642411|gb|EFS06991.1| transcription-repair coupling factor [Enterococcus faecium TX0133a04]
          Length = 1173

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 137/446 (30%), Positives = 232/446 (52%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  +  L   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVSSKIEDIADDLIKLYAARESE--KGYAFGPDDAYQKEFENAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 688  ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E +   +  G + +++  ++E  +       VE    L     + I
Sbjct: 808  QTYVMEKN-PGAIREAIHREMGRGGQVFYLYNRVETIE-----QKVEEIQELVPE--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  GYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G         +++  +L  A
Sbjct: 980  LGAQQHGFID--AVGFDMYSQMLSEA 1003


>gi|332685798|ref|YP_004455572.1| transcription-repair coupling factor [Melissococcus plutonius ATCC
            35311]
 gi|332369807|dbj|BAK20763.1| transcription-repair coupling factor [Melissococcus plutonius ATCC
            35311]
          Length = 1181

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 138/446 (30%), Positives = 230/446 (51%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++     E +A  +  L   ++ +   G     +    ++     P++ T  Q 
Sbjct: 569  EWNKTKQKVSTKIEDIADDLIQLYAAREAE--KGFAFPPDDAYQKEFEDAFPYTETDDQL 626

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   A+    Q V + P  ILAQQHY
Sbjct: 627  RSAAEIKHDMEKIRPMDRLLVGDVGYGKTEVALRAAFKAIACHKQVVFLVPTTILAQQHY 686

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +     +  + V +++    +  + + +++I HGQ  I++GTH L    I +  L L+
Sbjct: 687  ETMIDRFADFPVEVGLLSRFRTKKQQNETIQKIKHGQIDIVVGTHRLLSKDITFSDLGLL 746

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 747  IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 806

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T I+  N +  + E ++  L+ G + +++  ++E  +       VE   +L     + +
Sbjct: 807  QTYIME-NNLGAIREGIERELARGGQIFYLYNRVETIE-----KKVEEIKALVPE--ARV 858

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M+++  E+ +  F      +L+ TT+IE G+D+ + + + +ENA++ GL+ L+Q
Sbjct: 859  AYAHGQMTEVKLENTLFDFIEQQYDILVTTTIIETGVDIPNVNTLFVENADYMGLSTLYQ 918

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 919  LRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNL 978

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G    +     ++  +L  A
Sbjct: 979  LGAQQHGFIDSVGFD--MYTQMLSEA 1002


>gi|28572737|ref|NP_789517.1| transcription-repair coupling factor [Tropheryma whipplei TW08/27]
 gi|28410870|emb|CAD67255.1| transcription-repair coupling factor [Tropheryma whipplei TW08/27]
          Length = 1248

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 137/483 (28%), Positives = 226/483 (46%), Gaps = 27/483 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A  +  L  R+      G   + +            ++ T+ QE
Sbjct: 649  DWALTKSRARKAISSIALDLVKLYSRRS--ITKGYAFSPDTPFQTHFENEFLYTETRDQE 706

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I  +  DM     M RI+ GDVG GKT +A+ A   AV+   Q  ++ P  +LA+QH 
Sbjct: 707  KTIVAVKADMENSKPMDRIISGDVGFGKTEIAMRAAFKAVQDNKQVAVLVPTTLLARQHI 766

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + +  ++    ++  +K +  I+ G   I+IGTH L    IQ+  L L+
Sbjct: 767  QTFCERFDKWPVTIASLSRFQSKSEIQKTICGISSGGIDIVIGTHMLLNKKIQFKDLGLL 826

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV  +  + +      +L M+ATPIPRTL ++ +G  +IS ++  P  R PI
Sbjct: 827  IIDEEHRFGVNHKEAIKKLKIGIDILAMSATPIPRTLEMSLMGIKEISTLSTPPENRMPI 886

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P  R  +VI  ++  +  G + ++I              V +R   L     + +
Sbjct: 887  LTHVGPY-RDKQVIAAVRREIIRGGQVFYIHNDTATIS-----RVAQRLEQLIPE--ARV 938

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               H ++++   E  +  F  G   +L+ TT+IE G+D  +A+ III++AE++GL+QLHQ
Sbjct: 939  VSAHAKLAERMLEKTVIDFWEGKYDILVCTTIIETGLDNANANTIIIDSAENYGLSQLHQ 998

Query: 579  LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
            LRGRVGRG + +   L Y   L   +Y RL  +        G  IA +DL+ R  G +LG
Sbjct: 999  LRGRVGRGTKRAYAYLFYTSTLKDTAYKRLEAIARNNHLGAGAQIAMKDLELRGAGSLLG 1058

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL------------TSVRGQSIRI 683
              QSG         +L+  ++  A  + K   ++  +L              V  + +RI
Sbjct: 1059 HAQSGHI--ASVGFDLYIRMVTDAISNFKGEQSRTNNLRLEIPVDASIPKAYVDSERLRI 1116

Query: 684  LLY 686
             LY
Sbjct: 1117 ELY 1119


>gi|145219954|ref|YP_001130663.1| transcription-repair coupling factor [Prosthecochloris vibrioformis
           DSM 265]
 gi|145206118|gb|ABP37161.1| transcription-repair coupling factor [Chlorobium phaeovibrioides
           DSM 265]
          Length = 1112

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 143/453 (31%), Positives = 237/453 (52%), Gaps = 17/453 (3%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P  +K       AR+    ++L    I L+ +  Q K + G     +    ++   +  F
Sbjct: 477 PVLSKLGSSKWAARKEKVRNKLRDIAINLIKLYAQRKMQPGFAFGPDSIFMREFEASFIF 536

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q  AI+++ +DM   + M R++ GD G GKT +A+ A   AVE+  QA I+ P  
Sbjct: 537 DETPDQHKAIEELKKDMQAPHPMDRLICGDAGFGKTEIAMRAAFKAVESKKQAAILTPTT 596

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA QH E   +  +N  I + +++  +P+A +++ L++IA G   I+IGTH L    +Q
Sbjct: 597 ILAHQHAETFARRFENFPITIAVLSRFVPRAEQKETLKKIAAGTVDIVIGTHRLVSKDVQ 656

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+++DE+  FGV+ + KL ++      L M+ATPIPRTL  + LG  D+S ++  
Sbjct: 657 FNDLGLLVIDEEQHFGVEVKEKLREQFPGVDTLTMSATPIPRTLQFSMLGARDLSIVSTP 716

Query: 452 PAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           P  R+P++T+I   +   E+IE  ++  ++   + +++  ++   +E            L
Sbjct: 717 PKNRQPVETLITDYD--AELIETAIRREINRDGQVFFLHNRVAGLEEMQR-----TIREL 769

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
               ++ I   HG+M   + E +M         +LI+TT+I  G+D+ +A+ III  A+ 
Sbjct: 770 VP--SARIVYAHGQMPARELEKIMMDVMQKEVDVLISTTIIGSGLDISNANTIIINRADM 827

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDL 625
           FGL+ L+QLRGRVGR E  + C L+  P   L + +  RL+V++       GF IA  DL
Sbjct: 828 FGLSDLYQLRGRVGRSERKAYCYLITPPLHTLKREAVQRLAVIESFTELGSGFSIALRDL 887

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             R  G +LG +QSG    L     L+  +LE 
Sbjct: 888 DIRGAGNLLGAEQSGYIHELGFD--LYQKMLEE 918


>gi|81300135|ref|YP_400343.1| transcription-repair coupling factor [Synechococcus elongatus PCC
            7942]
 gi|81169016|gb|ABB57356.1| transcription-repair coupling factor [Synechococcus elongatus PCC
            7942]
          Length = 1153

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 147/470 (31%), Positives = 241/470 (51%), Gaps = 20/470 (4%)

Query: 214  KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                  W     +       +A  +  L  ++  ++    P   +    Q++  + P+ P
Sbjct: 548  SMTSKAWEKTKAKARKAVRKVAVDLLKLYAQRSQQEGHAYP--PDQPWQQELEESFPYQP 605

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q  A++ + +DM     M R++ GDVG GKT VA+ A+  AV AG Q  ++AP  IL
Sbjct: 606  TADQLKAVEAVKRDMESPQPMDRLVCGDVGFGKTEVAVRAIFKAVTAGKQVALLAPTTIL 665

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             QQHY  +K+      I + ++      + R+   +R+A G+  +++GTH L     Q+ 
Sbjct: 666  TQQHYHTLKERFAPYPIQIGLLNRFRTASERQNIQQRLATGELDVVVGTHQLLSKGTQFR 725

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L L++VDE+ RFGV Q+ K+    T   VL ++ATPIPRTL +   G  ++S IT  P 
Sbjct: 726  DLGLLVVDEEQRFGVNQKEKIKALKTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPP 785

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             R+PIKT ++P + ++ V   +   +  G + +++ P++E  +             L E 
Sbjct: 786  SRRPIKTHLMPYD-LEAVRTAISQEIDRGGQVFYVVPRVEGIEAI--------ATRLQEM 836

Query: 514  FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              S  IA+ HG+M + + E+ M +F N    ++I TT+IE G+D+   + I+IE+A+ FG
Sbjct: 837  LPSLRIAVAHGQMPEGELEATMLAFNNNEADVMICTTIIESGLDIPRVNTILIEDAQRFG 896

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            L+QL+QLRGRVGR    +   L Y     LS  +  RL  ++       G+ +A  DL+ 
Sbjct: 897  LSQLYQLRGRVGRAGIQAHAWLFYPGETVLSDQARQRLRAIQEFTQLGSGYQLAMRDLEI 956

Query: 628  RKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            R  G +LG++QSG  +   F +    L +SL EI  +D   +     DL+
Sbjct: 957  RGVGNLLGVEQSGQMEAIGFDLYMEMLQESLQEIRGQDIPQVDDTQIDLS 1006


>gi|160895086|ref|ZP_02075860.1| hypothetical protein CLOL250_02637 [Clostridium sp. L2-50]
 gi|156863517|gb|EDO56948.1| hypothetical protein CLOL250_02637 [Clostridium sp. L2-50]
          Length = 1174

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 136/457 (29%), Positives = 231/457 (50%), Gaps = 18/457 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W         +   +A ++  L  ++Q  +      + +    Q+     P+  T  Q+
Sbjct: 578  DWEKTRSRVKGHVATIAKELVNLYAKRQASQGFCY--SKDTIWQQEFEEMFPYEETDDQK 635

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI +   DM     M R++ GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 636  KAIAETKADMESSKIMDRLICGDVGFGKTEVAIRAAFKAVYDGRQVAYLVPTTILAQQHY 695

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+  +   + + ++         R+ +  +  G+  I+IGTH L    + + +L L+
Sbjct: 696  NTFKERMKEFPVEIRLLCRFCTPKEVRETIADLKAGKVDIVIGTHRLLSKDVAFKQLGLL 755

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  D+S + E P  R+ I
Sbjct: 756  IIDEEQRFGVTHKEKIKQMKTNVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPVDRRAI 815

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++ ++  + V E +K  L+   + Y++  ++     +N   V     SL     + +
Sbjct: 816  QTYVMELD-PELVKEAIKRELARDGQVYYVYNRV-----NNIEMVTSEIASLVPD--AVV 867

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M +   E +M  F N    +L+ TT+IE G+D+ +A+ +II +A+ FGL+QL+Q
Sbjct: 868  EYAHGQMHERQLEDIMYRFINHEIDVLVTTTIIETGLDIPNANTMIIHDADTFGLSQLYQ 927

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR +  +   L+Y     + + +  RL  ++   D   G  ++ +DL+ R  G I
Sbjct: 928  LRGRVGRSDRNAYAFLMYRRDKLIKETAEKRLKAIREFTDLGSGIKVSMKDLEIRGAGNI 987

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA-RKDAKHILTQ 669
            LG  QSG  + +     L+  +L  A R++    + +
Sbjct: 988  LGEDQSGHMEAVGYD--LYCKMLNDAIRQEMGEKVEE 1022


>gi|270308451|ref|YP_003330509.1| transcription-repair coupling factor (superfamily II helicase)
           [Dehalococcoides sp. VS]
 gi|270154343|gb|ACZ62181.1| transcription-repair coupling factor (superfamily II helicase)
           [Dehalococcoides sp. VS]
          Length = 1154

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 140/456 (30%), Positives = 227/456 (49%), Gaps = 20/456 (4%)

Query: 212 PRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
           P         EW     +     E  A ++  +  +++         + +    Q++  +
Sbjct: 552 PPSLHRLGTQEWQRAKEKASESAEETARELLDIYAKRELANG--YAFSADTVWQQEMEAS 609

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q  A+ DI +DM +   M R++ GDVG GKT VA+ A   AV  G Q  ++ 
Sbjct: 610 FPYVETPDQLKALCDIKEDMEKTRPMDRLILGDVGYGKTEVAIRAAFKAVMDGKQVAVLV 669

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQHY   ++      + VE+++    Q+ +++ +E +  G+  I IGTH L Q 
Sbjct: 670 PTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQKEVVENMEKGEVDICIGTHRLLQA 729

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            I++  L LVI+DE+ RFGV  +    +      VL ++ATPIPRTL ++ +G  D+S I
Sbjct: 730 DIKFKDLGLVIIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSMVGVRDMSVI 789

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R PIKTV+   +    + E +   +    + +++  ++          + ER  
Sbjct: 790 ETPPGERLPIKTVVAAFDER-LIREAILREMERNGQVFFVSNRV-----MGINLLAERIQ 843

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L     + I I HG+M++    +VM  F      +L+ TT+IE G+DV +A+ +II  A
Sbjct: 844 KLVPE--ARIGIGHGQMAEDKLAAVMADFVRYELDVLVCTTIIESGVDVPNANTLIINRA 901

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL---KNTEDGFLIAEE 623
           + FGL QL+QLRGRVGR  +++    LY     LS ++  RL  +        G+ IA +
Sbjct: 902 DRFGLTQLYQLRGRVGRSSQLAYAYFLYDKEKHLSGDAEKRLKTIYEAAELGAGYGIAMK 961

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           DL+ R  G +LG+KQSG    +     L+  +L  A
Sbjct: 962 DLEIRGAGTLLGVKQSGYINSVGFN--LYTQMLSEA 995


>gi|78224730|ref|YP_386477.1| transcription-repair coupling factor [Geobacter metallireducens
            GS-15]
 gi|78195985|gb|ABB33752.1| transcription-repair coupling factor [Geobacter metallireducens
            GS-15]
          Length = 1158

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 148/481 (30%), Positives = 248/481 (51%), Gaps = 22/481 (4%)

Query: 222  SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            +  + R A  E+    + +   R+      G   +    + ++   +  +  T  Q SAI
Sbjct: 573  AKGKARAAVQEMAGELLQIYAARQ---LHEGHAFSPPDDLYREFEASFAYEETSDQMSAI 629

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
             D++ DM+    M R++ GDVG GKT VA+     AV  G Q  ++ P  +LAQQH E  
Sbjct: 630  MDVIGDMTSAKPMDRLVCGDVGYGKTEVAMRGAFKAVMDGKQVAVLVPTTVLAQQHLETF 689

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            K       + VE+++       +++ LE++  G   +IIGTH L Q  + +  L L+IVD
Sbjct: 690  KARLGAYPVTVEMLSRFRTPKEQKEILEKVKKGAIDVIIGTHRLLQSDVTFKDLGLLIVD 749

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+ RFGV  + KL +      +L +TATPIPRTL ++ +G  D+S I   P  R  +KT 
Sbjct: 750  EEQRFGVTHKEKLKKYKAVVDILTLTATPIPRTLYMSMMGIRDLSIIDTPPVDRLAVKTF 809

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            +   +  D + E +   L  G + +++  +++        +  E    +     + IA+ 
Sbjct: 810  VARSSD-DLIREAVMRELRRGGQIFFVHNRVQSIM-----NWAEHLRRIVPE--AKIAVG 861

Query: 522  HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            HG+M + + E VM  F +G   LL+ TT+IE G+D+ +A+ +II+ A+ FGLAQL+QLRG
Sbjct: 862  HGQMDEGELEKVMLGFMHGETNLLLCTTIIESGLDIPNANTLIIDRADTFGLAQLYQLRG 921

Query: 582  RVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636
            RVGR ++ +   LL      +S ++  RL +++   +   GF +A  DL+ R  G+ILG 
Sbjct: 922  RVGRSKQRAYAYLLIPGEGAISSDARERLKIIQELTELGAGFRLATHDLEIRGAGDILGA 981

Query: 637  KQSGMPKFLIAQPELHDSLLEIARKDAK---HILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            KQSG         +L+  LLE A ++ K    +   +P++ ++R  +     Y+ + N+ 
Sbjct: 982  KQSG--NIAAVGFDLYTELLEEAIQNLKGEERLERVEPEI-NLRIPAFVPEDYVREPNQR 1038

Query: 694  F 694
             
Sbjct: 1039 L 1039


>gi|116617523|ref|YP_817894.1| transcription-repair coupling factor [Leuconostoc mesenteroides
            subsp. mesenteroides ATCC 8293]
 gi|116096370|gb|ABJ61521.1| transcription-repair coupling factor [Leuconostoc mesenteroides
            subsp. mesenteroides ATCC 8293]
          Length = 1179

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 246/466 (52%), Gaps = 20/466 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A  +  L  +++ ++    P   +     K   +  +  T  Q 
Sbjct: 567  EWAKTKRQVAAKIEDIADDLLELYAKREAQQGYVFP--PDDHAQIKFDDSFGYPETPDQI 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I  DM +   M R+L GDVG GKT VAL A+  A  +G Q   +AP  IL QQHY
Sbjct: 625  RSIEEIKVDMQKLRPMDRLLVGDVGFGKTEVALRAVFKAAHSGKQVAFLAPTTILVQQHY 684

Query: 339  EF-IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E  + +++   +I + +++        +  +E++ + +  +++GTH L    + +  L L
Sbjct: 685  ETMLARFSDFPEIKIGVLSRFQTPTQNKMIIEQLQNHEIDVVVGTHRLLSKDVDFSDLGL 744

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +I+DE+ RFGV+ + +L Q  T+  VL +TATPIPRTL +  +G  D+S I   PA R P
Sbjct: 745  LIIDEEQRFGVKHKERLKQLRTSVDVLTLTATPIPRTLNMAMVGARDLSVIETPPANRYP 804

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            I+T ++ ++    V + ++  ++   + +++  ++ +      +        L    ++ 
Sbjct: 805  IQTYVLAMD-WKIVRDAIEKEITRNGQVFYLHNRVADLDRIVSQ-----IEELIP--SAR 856

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A IHG+MS+   ES++  F NG   +L+ TT+IE G+D+ +A+ +I+ENA+H GLAQL+
Sbjct: 857  VAAIHGQMSETQLESILYDFLNGQYDVLVTTTIIETGVDIPNANTLIVENADHMGLAQLY 916

Query: 578  QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++     Y      S+ +  RL  +++      GF IA  DL  R  G+
Sbjct: 917  QLRGRVGRSTRLAYAYFTYPFTRTPSEEAEKRLEAIRDFTELGSGFRIAMRDLSIRGAGD 976

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQDPDLTSV 676
            +LG +Q G    +     ++  +L+  +A+K  K +    P+  + 
Sbjct: 977  LLGKQQHGFIDSVGYD--MYTQMLKDTVAQKQGKQVTASQPETDAE 1020


>gi|257888639|ref|ZP_05668292.1| transcription-repair coupling factor [Enterococcus faecium 1,141,733]
 gi|257824693|gb|EEV51625.1| transcription-repair coupling factor [Enterococcus faecium 1,141,733]
          Length = 1173

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 137/446 (30%), Positives = 232/446 (52%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  +  L   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVSSKIEDIADDLIKLYAARESE--KGYAFGPDDAYQKEFENAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 688  ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E +   +  G + +++  ++E  +       VE    L     + I
Sbjct: 808  QTYVMEKN-PGAIREAIHREMGRGGQVFYLYNRVETIE-----QKVEEIQELVPE--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  GYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G         +++  +L  A
Sbjct: 980  LGAQQHGFID--AVGFDMYSQMLSEA 1003


>gi|56707766|ref|YP_169662.1| transcription-repair coupling factor [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670237|ref|YP_666794.1| transcription-repair coupling factor [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456837|ref|ZP_03665310.1| transcription-repair coupling factor [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254874578|ref|ZP_05247288.1| transcription-repair coupling factor, ATP-dependent [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|56604258|emb|CAG45277.1| Transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320570|emb|CAL08660.1| Transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. tularensis FSC198]
 gi|254840577|gb|EET19013.1| transcription-repair coupling factor, ATP-dependent [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158938|gb|ADA78329.1| Transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 1141

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 143/417 (34%), Positives = 218/417 (52%), Gaps = 13/417 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  + +   G   +++ +   +   + P+  T  Q SAI D+ +DM     M R++ G
Sbjct: 566 LEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICG 625

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT +A+ A   A +   Q  I+ P  ILAQQHY   K    NT   +E+IT +  
Sbjct: 626 DVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQHYNSFKDRFTNTAFNIEVITRSKT 685

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++  E +  G   IIIGTH L    I +  L L+I+DE+HRFGV Q+ KL      
Sbjct: 686 PKAQQQLFEDLKKGTIDIIIGTHKLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAE 745

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L M+ATPIPR+L +      D+S I   PA R  +KT +   +  + + E +     
Sbjct: 746 IDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDN-NIIREAVSRETI 804

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  ++E  ++       E    L       IAI HG+MS+ + + VM  FK+ 
Sbjct: 805 RGGQIFYLYNKVETIQKKK-----EILQELFPRL--RIAIAHGQMSEKEIQKVMFDFKHN 857

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--P 598
              +L+ TT+IE GID+ +A+ +IIE+A + GLAQLHQLRGRVGR    +   +L     
Sbjct: 858 KYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEA 917

Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            ++K++  RL  + NTE    GF +A  DL+ R  GEILG +QSG    +     + 
Sbjct: 918 SITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSGNIDGIGLNLYMD 974


>gi|166364821|ref|YP_001657094.1| transcription-repair coupling factor [Microcystis aeruginosa
            NIES-843]
 gi|166087194|dbj|BAG01902.1| transcription-repair coupling factor [Microcystis aeruginosa
            NIES-843]
          Length = 1160

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 148/463 (31%), Positives = 247/463 (53%), Gaps = 22/463 (4%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
             + AR R +  +L    I +   R Q   + G    ++    +++  + P+ PT  Q  A
Sbjct: 565  ATKARVRKSVKKLAVDLINIYAQRAQ---KSGFAYPMDNPWQRELEDSFPYQPTADQLKA 621

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIGILAQQHYE 339
            I+D+ +D+     M R++ GDVG GKT VA+ A+  AV  G  Q  ++AP  IL QQHY 
Sbjct: 622  IQDVKRDLESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTTGHKQVALLAPTTILTQQHYH 681

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +K+      I V ++      + ++  ++R+  G+  I++GT  L   ++++  L L++
Sbjct: 682  TLKERFAPYPINVGLLNRFRTNSEKKDIVQRLKTGELDIVVGTQLLLSKAVEFKDLGLLV 741

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV Q+ K+    +   VL +TATPIPRTL ++  G  ++S IT  P  R+PI+
Sbjct: 742  IDEEQRFGVNQKEKIKAFKSNIDVLTLTATPIPRTLYMSLSGVREMSLITTPPPSRRPIQ 801

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSI 518
            T +   N  D +   ++  L  G + +++ P+IE  +        E+  ++      + I
Sbjct: 802  THLSSYNS-DVIRTAIRNELDRGGQIFYVVPRIEGIE--------EKAAAIQGMIPGARI 852

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            AI HGRM + + E+ M +F NG   +L+ TT++E G+D+   + IIIE+A+ FGLAQL+Q
Sbjct: 853  AIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIEDAQKFGLAQLYQ 912

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LLY     L++ +  RL  ++       G+ +A  DL+ R  G +
Sbjct: 913  LRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQEFTQLGSGYQLATRDLEIRGAGNL 972

Query: 634  LGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            LG +QSG  +   F +    L ++L EI  ++   +     DL
Sbjct: 973  LGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQVEDTQIDL 1015


>gi|293571071|ref|ZP_06682112.1| transcription-repair coupling factor [Enterococcus faecium E980]
 gi|291608854|gb|EFF38135.1| transcription-repair coupling factor [Enterococcus faecium E980]
          Length = 1173

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 137/446 (30%), Positives = 232/446 (52%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  +  L   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVSSKIEDIADDLIKLYAARESE--KGYAFGPDDAYQKEFENAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 688  ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E +   +  G + +++  ++E  +       VE    L     + I
Sbjct: 808  QTYVMEKN-PGAIREAIHREMGRGGQVFYLYNRVETIE-----QKVEEIQELVPE--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  GYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G         +++  +L  A
Sbjct: 980  LGAQQHGFID--AVGFDMYSQMLSEA 1003


>gi|134302051|ref|YP_001122020.1| transcription-repair coupling factor [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049828|gb|ABO46899.1| transcription-repair coupling factor [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 1141

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 143/417 (34%), Positives = 218/417 (52%), Gaps = 13/417 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  + +   G   +++ +   +   + P+  T  Q SAI D+ +DM     M R++ G
Sbjct: 566 LEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICG 625

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT +A+ A   A +   Q  I+ P  ILAQQHY   K    NT   +E+IT +  
Sbjct: 626 DVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQHYNSFKDRFTNTAFNIEVITRSKT 685

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++  E +  G   IIIGTH L    I +  L L+I+DE+HRFGV Q+ KL      
Sbjct: 686 PKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAE 745

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L M+ATPIPR+L +      D+S I   PA R  +KT +   +  + + E +     
Sbjct: 746 IDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDN-NIIREAVSRETI 804

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  ++E  ++       E    L       IAI HG+MS+ + + VM  FK+ 
Sbjct: 805 RGGQIFYLYNKVETIQKKK-----EILQELFPRL--RIAIAHGQMSEKEIQKVMFDFKHN 857

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--P 598
              +L+ TT+IE GID+ +A+ +IIE+A + GLAQLHQLRGRVGR    +   +L     
Sbjct: 858 KYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEA 917

Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            ++K++  RL  + NTE    GF +A  DL+ R  GEILG +QSG    +     + 
Sbjct: 918 SITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSGNIDGIGLNLYMD 974


>gi|117924949|ref|YP_865566.1| transcription-repair coupling factor [Magnetococcus sp. MC-1]
 gi|117608705|gb|ABK44160.1| transcription-repair coupling factor [Magnetococcus sp. MC-1]
          Length = 1198

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 152/469 (32%), Positives = 241/469 (51%), Gaps = 19/469 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     +       +A ++  +  +++  + +    +    + Q+     PF  T  Q  
Sbjct: 589  WAKTRAKARKKILEMAEELVAIQAQREATQGVVY--SGPDALYQEFASTFPFEETVDQAK 646

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ +L+DM+    M R++ GDVG GKT VAL A   A   G Q  I+ P  ILAQQHYE
Sbjct: 647  AIEAVLEDMASPKAMDRLVCGDVGFGKTEVALRATFRAAMDGKQVAILVPTTILAQQHYE 706

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               K      I V+I++       ++  +E + HG   +I+GTH L Q  +++  L L++
Sbjct: 707  NFAKRLAGYPIKVDILSRFRTPKEQKATIEAVGHGTIDVIVGTHRLLQTDVKFKDLGLLV 766

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV  + ++        +L +TATPIPRTL +   G  DIS I   PA R  I+
Sbjct: 767  VDEEQRFGVSHKERIKNLRATLDILTLTATPIPRTLNMAMAGVRDISIIASPPADRLAIR 826

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T+I   ++  +V E +   L  G + +++  Q+++ +    R   E    + E   + + 
Sbjct: 827  TIITHYDK-QQVREAILRELYRGGQVFYVHNQVQDIE----RKAQEIAELVPE---ARVG 878

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M +   E VM  F   T  +L+ TT++E G+D+  A+ III+ A+ FGLAQLHQL
Sbjct: 879  VAHGQMRENQLEKVMMEFYRQTFNILVCTTIVENGVDIPTANTIIIDRADKFGLAQLHQL 938

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR +  +   +L      L+K++  RL  L++  +   GF++A  DL+ R  G IL
Sbjct: 939  RGRVGRSKHRAYAYMLVPHLRRLTKHAEKRLEALESLGELGAGFMLATHDLEIRGAGNIL 998

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL--TSVRGQSI 681
            G +QSG         EL++ +L  A    +    Q  DL  T+  GQ+ 
Sbjct: 999  GDEQSGQI--KEVGFELYNQMLREAVVALQTARAQGRDLASTTPLGQAP 1045


>gi|56750236|ref|YP_170937.1| transcription-repair coupling factor [Synechococcus elongatus PCC
            6301]
 gi|56685195|dbj|BAD78417.1| transcription-repair coupling factor [Synechococcus elongatus PCC
            6301]
          Length = 1153

 Score =  349 bits (896), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 240/470 (51%), Gaps = 20/470 (4%)

Query: 214  KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                  W     +       +A  +  L  ++  ++    P   +    Q++  + P+ P
Sbjct: 548  SMTSKAWEKTKAKARKAVRKVAVDLLKLYAQRSQQEGHAYP--PDQPWQQELEESFPYQP 605

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q  A++ + +DM     M R++ GDVG GKT VA+ A+  AV AG Q  ++AP  IL
Sbjct: 606  TADQLKAVEAVKRDMESPQPMDRLVCGDVGFGKTEVAVRAIFKAVTAGKQVALLAPTTIL 665

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
             QQHY  +K+      I + ++      + R+   +R+A G+  +++GT  L     Q+ 
Sbjct: 666  TQQHYHTLKERFAPYPIQIGLLNRFRTASERQNIQQRLATGELDVVVGTQQLLSKGTQFR 725

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L L++VDE+ RFGV Q+ K+    T   VL ++ATPIPRTL +   G  ++S IT  P 
Sbjct: 726  DLGLLVVDEEQRFGVNQKEKIKALKTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPP 785

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             R+PIKT ++P + ++ V   +   +  G + +++ P++E  +             L E 
Sbjct: 786  SRRPIKTHLMPYD-LEAVRTAISQEIDRGGQVFYVVPRVEGIEAI--------ATRLQEM 836

Query: 514  FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              S  IA+ HG+M + + E+ M +F N    ++I TT+IE G+D+   + I+IE+A+ FG
Sbjct: 837  LPSLRIAVAHGQMPEGELEATMLAFNNNEADVMICTTIIESGLDIPRVNTILIEDAQRFG 896

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            L+QL+QLRGRVGR    +   L Y     LS  +  RL  ++       G+ +A  DL+ 
Sbjct: 897  LSQLYQLRGRVGRAGIQAHAWLFYPGETVLSDQARQRLRAIQEFTQLGSGYQLAMRDLEI 956

Query: 628  RKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            R  G +LG++QSG  +   F +    L +SL EI  +D   +     DL+
Sbjct: 957  RGVGNLLGVEQSGQMEAIGFDLYMEMLQESLQEIRGQDIPQVDDTQIDLS 1006


>gi|163815685|ref|ZP_02207057.1| hypothetical protein COPEUT_01865 [Coprococcus eutactus ATCC 27759]
 gi|158448990|gb|EDP25985.1| hypothetical protein COPEUT_01865 [Coprococcus eutactus ATCC 27759]
          Length = 1186

 Score =  349 bits (896), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 135/460 (29%), Positives = 230/460 (50%), Gaps = 20/460 (4%)

Query: 211  NPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
             P K       EW         + + +A  +  L   +Q K+      + + +  ++   
Sbjct: 568  RPPKINRLGGNEWQKVRNRVKGHVDEVAEHLVKLYAERQSKEG--HAYSPDSEWQKEFEE 625

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
              P+  T  Q  AI D+  DM     M R++ GDVG GKT VA+ A   AV    Q   +
Sbjct: 626  TFPYKETDDQLRAIADVKADMESSRIMDRLVCGDVGFGKTEVAIRAAFKAVGDSRQVAYL 685

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  ILA+QHYE   +  ++  +++ ++     Q   +  L  +  G+  I+IGTH L  
Sbjct: 686  VPTTILAEQHYETFTERMKDYPVVIRLLCRFCTQKEIKNTLRELKEGKVDIVIGTHRLLS 745

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              +++  L L+I+DE+ RFGV  + K+ +  T   VL +TATPIPRTL ++ +G  D+S 
Sbjct: 746  KDVEFKNLGLLIIDEEQRFGVNHKEKIKEMKTNVDVLTLTATPIPRTLHMSLVGIRDMSL 805

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
            + E P  R+PI+T ++  ++ +   E +   L+   + Y++  ++ + +           
Sbjct: 806  LEEAPVDRRPIQTYVMEYDK-ELAREAIARELARQGQVYYVYNRVNDIE-----QFTAEV 859

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              L  +  +++   HG+M     E +M  F      +L+ TT+IE G+D+ +A+ III +
Sbjct: 860  QKLVPN--ANVEFAHGQMDGRTLEDIMYRFNKKEIDVLVCTTIIETGLDIPNANTIIIHD 917

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
            A +FGLAQL+QLRGRVGR +  +   + Y  +  +S+ +  RL  +K   D   G  I++
Sbjct: 918  ANNFGLAQLYQLRGRVGRSDRSAFAFMFYRRNKVISEVAEKRLRAIKEYTDLGSGVKISK 977

Query: 623  EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
             DL  R  G +LG  QSG   + +   +L+  +L  A ++
Sbjct: 978  ADLNIRGAGSVLGESQSG--NYEVVGYDLYCKMLNDAVRE 1015


>gi|319794000|ref|YP_004155640.1| transcription-repair coupling factor [Variovorax paradoxus EPS]
 gi|315596463|gb|ADU37529.1| transcription-repair coupling factor [Variovorax paradoxus EPS]
          Length = 1160

 Score =  349 bits (896), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 160/579 (27%), Positives = 256/579 (44%), Gaps = 39/579 (6%)

Query: 130  KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR------LP 183
             + +N+                   + + V     G+    ++ ++   L +       P
Sbjct: 454  TRRRNKKQEQVSDVEALIKDLSELNVGDPVVHTAHGI--GRYRGLMHMDLGQGVDAEGKP 511

Query: 184  VLPEWIEKDLLQKKSF---------PSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDEL 233
            +L E +  +   K +           S     +    P  +    +W    R+       
Sbjct: 512  LLQEMLHLEYADKATLYVPVSQLHQISRYTGVSADEAPLHRLGSGQWEKAKRKAAEQVRD 571

Query: 234  LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
             A ++  +  R+  ++             +    +  F  T  Q++AI  ++QDM     
Sbjct: 572  SAAELLNIYARRAAREG--HAFRYSAADYEVFANDFGFQETADQKAAIHAVVQDMISPQP 629

Query: 294  MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            M R++ GDVG GKT VAL A   A+  G Q   +AP  +LA+QHY+ +        + V 
Sbjct: 630  MDRLVCGDVGFGKTEVALRAAFIAITGGKQVAFLAPTTLLAEQHYQTLVDRFAKWPVKVA 689

Query: 354  IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
             ++          A + +A GQ  I++GTH L   S+++  L L+I+DE+HRFGV+ +  
Sbjct: 690  EMSRFRSAKEITAAAKGLAEGQIDIVVGTHKLLSQSVKFKNLGLLIIDEEHRFGVRHKEA 749

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
            +        VL +TATPIPRTL +   G  D+S I   P  R  IKT +        + E
Sbjct: 750  MKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRNEG-TGVIRE 808

Query: 474  RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKES 532
             +   L  G + Y++  ++E  +         R   L E    + IA+ HG+M + + E 
Sbjct: 809  AVLRELKRGGQVYFLHNEVETIE--------NRRQKLEEILPEARIAVAHGQMPERELER 860

Query: 533  VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            VM  F      LL+ +T+IE GIDV  A+ I++  A+ FGLAQLHQLRGRVGR    +  
Sbjct: 861  VMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRADKFGLAQLHQLRGRVGRSHHQAYA 920

Query: 593  ILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
             L+      L+K +  RL     ++    GF +A  DL+ R  GE+LG  QSG    +  
Sbjct: 921  YLMVPDTEGLTKQAAQRLDAIQQMEELGSGFYLAMHDLEIRGTGEVLGENQSGNMMEIGF 980

Query: 648  QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            Q  L++ +L  A +  K    Q+PDL S    +  I L+
Sbjct: 981  Q--LYNEMLSEAVRALKA--GQEPDLLSPLSVTTEINLH 1015


>gi|257899966|ref|ZP_05679619.1| transcription-repair coupling factor [Enterococcus faecium Com15]
 gi|257837878|gb|EEV62952.1| transcription-repair coupling factor [Enterococcus faecium Com15]
          Length = 1173

 Score =  349 bits (896), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 137/446 (30%), Positives = 232/446 (52%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  +  L   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVSSKIEDIADDLIKLYAARESE--KGYAFGPDDAYQKEFENAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 688  ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E +   +  G + +++  ++E  +       VE    L     + I
Sbjct: 808  QTYVMEKN-PGAIREAIHREMGRGGQVFYLYNRVETIE-----QKVEEIQELVPE--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  GYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G         +++  +L  A
Sbjct: 980  LGAQQHGFID--AVGFDMYSQMLSEA 1003


>gi|325662342|ref|ZP_08150951.1| hypothetical protein HMPREF0490_01690 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471344|gb|EGC74567.1| hypothetical protein HMPREF0490_01690 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 1115

 Score =  349 bits (896), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 156/492 (31%), Positives = 255/492 (51%), Gaps = 26/492 (5%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAK--DFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
           +L+QK        A      P+  K    EW           + +A ++  L   +Q ++
Sbjct: 493 ELIQKY-------ASADAKRPKLNKLGGQEWAKTKTRVRGAVKEIAKELVELYAARQKEE 545

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   +    ++     PF  T  Q +AI+   +DM  K  M R++ GDVG GKT V
Sbjct: 546 G--YVYGEDTIWQREFEEMFPFEETDDQLNAIEATKKDMESKKIMDRLICGDVGYGKTEV 603

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A+ A   AV+   Q V + P  +LAQQHY    +  ++  + V+++      A +RK ++
Sbjct: 604 AVRAAFKAVQESKQVVYLVPTTVLAQQHYNTFVQRMKDFPVRVDLLCRFRTPAQQRKTID 663

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +  G   I+IGTH +  D +++  L L+I+DE+ RFGVQ + K+ Q      VL +TAT
Sbjct: 664 DVRKGLVDIVIGTHRVLSDDLKFKDLGLLIIDEEQRFGVQHKEKIKQMKENVDVLTLTAT 723

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL ++ +G  D+S + E P  R PI+T ++  N  + V E ++  L+   + Y++ 
Sbjct: 724 PIPRTLHMSLIGIRDMSVLEEPPMDRMPIQTYVMEYND-EMVREAIERELARDGQVYYVY 782

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            ++++  E     V +R   L     +++A  HG+M +   E +M  F NG   +LI+TT
Sbjct: 783 NRVQDIDE-----VADRIQKLVPE--ANVAFAHGQMREHQLERIMYDFINGEIDVLISTT 835

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
           +IE G+D+ +A+ +II +A+  GL+QL+QLRGRVGR   ++   LLY     L + +  R
Sbjct: 836 IIETGLDISNANTMIIHDADRLGLSQLYQLRGRVGRSNRMAYAFLLYKRDKLLKEVAEKR 895

Query: 608 LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LS ++   D   GF IA  DL+ R  G +LG +Q G  + +     L+  +L  A K  K
Sbjct: 896 LSAIREFTDLGSGFKIAMRDLEIRGAGNLLGAEQHGHMEAVGYD--LYCKMLNEAVKHLK 953

Query: 665 HILTQDPDLTSV 676
             + ++P  T+V
Sbjct: 954 GEVEEEPYTTTV 965


>gi|331086145|ref|ZP_08335227.1| hypothetical protein HMPREF0987_01530 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406304|gb|EGG85818.1| hypothetical protein HMPREF0987_01530 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 1113

 Score =  349 bits (896), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 156/492 (31%), Positives = 255/492 (51%), Gaps = 26/492 (5%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAK--DFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
           +L+QK        A      P+  K    EW           + +A ++  L   +Q ++
Sbjct: 491 ELIQKY-------ASADAKRPKLNKLGGQEWAKTKTRVRGAVKEIAKELVELYAARQKEE 543

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   +    ++     PF  T  Q +AI+   +DM  K  M R++ GDVG GKT V
Sbjct: 544 G--YVYGEDTIWQREFEEMFPFEETDDQLNAIEATKKDMESKKIMDRLICGDVGYGKTEV 601

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           A+ A   AV+   Q V + P  +LAQQHY    +  ++  + V+++      A +RK ++
Sbjct: 602 AVRAAFKAVQESKQVVYLVPTTVLAQQHYNTFVQRMKDFPVRVDLLCRFRTPAQQRKTID 661

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +  G   I+IGTH +  D +++  L L+I+DE+ RFGVQ + K+ Q      VL +TAT
Sbjct: 662 DVRKGLVDIVIGTHRVLSDDLKFKDLGLLIIDEEQRFGVQHKEKIKQMKENVDVLTLTAT 721

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL ++ +G  D+S + E P  R PI+T ++  N  + V E ++  L+   + Y++ 
Sbjct: 722 PIPRTLHMSLIGIRDMSVLEEPPMDRMPIQTYVMEYND-EMVREAIERELARDGQVYYVY 780

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            ++++  E     V +R   L     +++A  HG+M +   E +M  F NG   +LI+TT
Sbjct: 781 NRVQDIDE-----VADRIQKLVPE--ANVAFAHGQMREHQLERIMYDFINGEIDVLISTT 833

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
           +IE G+D+ +A+ +II +A+  GL+QL+QLRGRVGR   ++   LLY     L + +  R
Sbjct: 834 IIETGLDISNANTMIIHDADRLGLSQLYQLRGRVGRSNRMAYAFLLYKRDKLLKEVAEKR 893

Query: 608 LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LS ++   D   GF IA  DL+ R  G +LG +Q G  + +     L+  +L  A K  K
Sbjct: 894 LSAIREFTDLGSGFKIAMRDLEIRGAGNLLGAEQHGHMEAVGYD--LYCKMLNEAVKHLK 951

Query: 665 HILTQDPDLTSV 676
             + ++P  T+V
Sbjct: 952 GEVEEEPYTTTV 963


>gi|293553692|ref|ZP_06674316.1| transcription-repair coupling factor [Enterococcus faecium E1039]
 gi|291602267|gb|EFF32495.1| transcription-repair coupling factor [Enterococcus faecium E1039]
          Length = 1173

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 136/446 (30%), Positives = 231/446 (51%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  +  E +A  +  L   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWAKTKRKVSSKIEDIADDLIKLYAARESE--KGYAFGPDDAYQKEFENAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 688  ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E +   +  G + +++  ++E  +       VE    L     + I
Sbjct: 808  QTYVMEKN-PGAIREAIHREMGRGGQVFYLYNRVETIE-----QKVEEIQELVPE--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  GYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G         +++  +L  A
Sbjct: 980  LGAQQHGFID--AVGFDMYSQMLSEA 1003


>gi|256820721|ref|YP_003142000.1| transcription-repair coupling factor [Capnocytophaga ochracea DSM
           7271]
 gi|256582304|gb|ACU93439.1| transcription-repair coupling factor [Capnocytophaga ochracea DSM
           7271]
          Length = 1109

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 133/455 (29%), Positives = 232/455 (50%), Gaps = 18/455 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++     + +A  +  L  ++  K+  G   + +  +  ++  +  +  T  Q  
Sbjct: 501 WKALKQKTKTRVKEIAFNLIQLYAKR--KESKGYAYSHDSYMQNELEASFLYEDTPDQSK 558

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  ++  DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LA QH++
Sbjct: 559 ATAEVKADMESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTVLAFQHFQ 618

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + ++ +        ++  LE +A+GQ  IIIGTH +  + + Y  L L+I
Sbjct: 619 TFSQRMKDFPVRIDYLNRFRTAKEKKIILEELANGQLDIIIGTHQIVGEKVAYKDLGLLI 678

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S I   P  R PI 
Sbjct: 679 VDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLSVINTPPPNRYPID 738

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + ++P +  + + + ++  +  G + +++  ++E  +E            L     + +A
Sbjct: 739 SQVVPFSE-EIIRDGIRYEIQRGGQVFFMHNRVENIQEVAG-----MIQRLLPD--ARVA 790

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E  M +F +G   +L+ATT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 791 IGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNAHNFGLSDLHQM 850

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   +S  +  R+  +    D   G  IA +DL+ R  G++L
Sbjct: 851 RGRVGRSNKKAFCYFITPPLVAMSDGARKRIEAIAQFSDLGSGLNIAMKDLEIRGAGDLL 910

Query: 635 GIKQSGMP---KFLIAQPELHDSLLEIARKDAKHI 666
           G +QSG      F   Q  L ++++E+   +   +
Sbjct: 911 GGEQSGFINELGFETYQKILQEAIVELKENEFSEL 945


>gi|296123961|ref|YP_003631739.1| transcription-repair coupling factor [Planctomyces limnophilus DSM
           3776]
 gi|296016301|gb|ADG69540.1| transcription-repair coupling factor [Planctomyces limnophilus DSM
           3776]
          Length = 1103

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 142/459 (30%), Positives = 238/459 (51%), Gaps = 15/459 (3%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P  +K        +++   + +      +L ++ + + + GI    +    ++   + P+
Sbjct: 492 PELSKLGGTAWAQKKKRVAEAVTDMAADMLRLQAERELQPGIAFPPDSHWMEEFEASFPY 551

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q  AI DI +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  
Sbjct: 552 IETIDQSKAILDIKRDMERPRPMERLICGDVGFGKTEVAMRAAFKAVDGGKQVAVLVPTT 611

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LA+QHY           I +  ++    +  ++  L  +  G   ++IGTH L Q  + 
Sbjct: 612 VLAEQHYRSFSSRFAEFPINIGQLSRFRTKTEQKLTLSGLMDGSVDLVIGTHRLVQSDVH 671

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+I+DE+ RFGV+ + +L +  T   +L ++ATPIPRTL L+ +G  DIS +   
Sbjct: 672 FKDLGLLIIDEEQRFGVEAKERLKKLRTQTDILTLSATPIPRTLHLSLIGVRDISNLETP 731

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R  I+T I   +    + + +   L+ G + Y++  ++      N +++ ER  S+ 
Sbjct: 732 PQDRMAIETRICRFDPT-LIRQAIVRELNRGGQIYFVHNRV-----YNIQTMAERIRSIV 785

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               + + ++HG+M++ + E  M  F  G   +L+ATT+IE G+D+ +A+ I I  AEH+
Sbjct: 786 PE--AQVGVVHGQMNEHEMEEAMLGFVRGDLDVLVATTIIESGLDIPNANTIFINQAEHY 843

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLK 626
           GLA++HQLRGRVGR +  + C L+      LS  +  RL  ++   +   GF I+  DL+
Sbjct: 844 GLAEMHQLRGRVGRYKHRAYCYLMVEEGKILSPQATKRLKAIEEFSELGAGFKISMRDLE 903

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R  G ILG +QSG     I   EL+  LLE A +  K 
Sbjct: 904 IRGAGNILGTEQSGHI--AIVGYELYCQLLENAVRALKR 940


>gi|312134559|ref|YP_004001897.1| transcription-repair coupling factor [Caldicellulosiruptor
           owensensis OL]
 gi|311774610|gb|ADQ04097.1| transcription-repair coupling factor [Caldicellulosiruptor
           owensensis OL]
          Length = 1141

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 135/440 (30%), Positives = 228/440 (51%), Gaps = 18/440 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++     E++A  +  L  ++Q     G   + +    ++     P++ T+ Q 
Sbjct: 554 EWQRQKQKVKKSLEVVAKDLVELYAKRQL--GQGFKFSKDTVWQKEFEEKFPYTETEGQL 611

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I +DM  +  M RIL GDVG GKT VA+ A   AV    Q  ++ P  ILAQQHY
Sbjct: 612 QAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHY 671

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                  ++  + +E+++    +  ++K ++ +  G   I+IGTH L    +++  L L+
Sbjct: 672 MTFSARMKDFPVTIEVLSRLKSETQQKKIIKGLREGTIDIVIGTHRLLSSDVKFKDLGLL 731

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+H+FGV+ + K+ +  T   VL +TATPIPRTL +  LG  D+S I + P  R P+
Sbjct: 732 IIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRFPV 791

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-- 516
           +T ++  N    + E +   +S G + +++  ++++ +        E    L        
Sbjct: 792 QTFVLEYNER-IIKEAILREISRGGQVFYLYNRVKDIQ--------EVAAKLQNLVGEDV 842

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HG+M + + E V+  F  G   +L+ TT+IE G+D+ + + +I+E+++  GLAQL
Sbjct: 843 KIACAHGQMEEEELEEVLIDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLAQL 902

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           +QLRGRVGR   I+     +     LS+ +  RL+ +K       GF IA  DL+ R  G
Sbjct: 903 YQLRGRVGRSSRIAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRGAG 962

Query: 632 EILGIKQSGMPKFLIAQPEL 651
            I+G  Q G    +     +
Sbjct: 963 SIIGKLQHGHINSVGYDMYI 982


>gi|119715169|ref|YP_922134.1| transcription-repair coupling factor [Nocardioides sp. JS614]
 gi|119535830|gb|ABL80447.1| transcription-repair coupling factor [Nocardioides sp. JS614]
          Length = 1224

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 144/485 (29%), Positives = 237/485 (48%), Gaps = 21/485 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT            +A ++  L   +Q     G     +    +++    PF  T  Q 
Sbjct: 615  DWTKRKNRARKAVREIAAELIKLYAARQA--TRGHAFGPDTPWQRELEDAFPFHETPDQL 672

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S + ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L  QH 
Sbjct: 673  STVDEVKGDMMRTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVTQHL 732

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      +I++ ++     A  R+ +  +A G   I++GTH L    I++  L L+
Sbjct: 733  STFAERMSGFPVILKALSRFQTDAEAREVIAAMADGSVDIVVGTHRLLNPDIRFKDLGLI 792

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++ +  T+  VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 793  IVDEEQRFGVEHKEQMKRLRTSVDVLSMSATPIPRTLEMAITGIREMSTITTPPEERHPV 852

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +++  ++  L    + ++I  ++   +         R   L     + +
Sbjct: 853  LTYVGAYEDR-QIVAAVRRELLREGQVFYIHNRVSSIE-----KAAARIKELVPE--ARV 904

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M +   E VM  F      +L+ TT++E G+DV +A+ +IIE A+  GL+QLHQ
Sbjct: 905  ATAHGQMGEHQLEQVMLDFWEKRFDVLVCTTIVESGLDVSNANTMIIERADTLGLSQLHQ 964

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E +    LY P  PL++ ++ RL+ L    D   G  IA +DL+ R  G +
Sbjct: 965  LRGRVGRSRERAYAYFLYPPEKPLTETAHERLATLAQHSDLGGGMAIAMKDLEIRGAGNL 1024

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI--RILLYLYQYN 691
            LG +QSG    +     L+  L+  A  D K  +  +P+L  VR +      L + Y  +
Sbjct: 1025 LGGEQSGHIADVGFD--LYVRLVGEAVNDFKGEV--EPELNEVRIELPVDAHLPHDYIPS 1080

Query: 692  EAFQF 696
            E  + 
Sbjct: 1081 ERLRL 1085


>gi|87125795|ref|ZP_01081638.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917]
 gi|86166604|gb|EAQ67868.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917]
          Length = 1184

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 145/508 (28%), Positives = 248/508 (48%), Gaps = 19/508 (3%)

Query: 198  SFPSIAEAFNIIHNPRKAKDFEWTSPAR-ERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S+         P +      ++  + +  A   +    + L+ +  +  +  G    
Sbjct: 538  QLGSLGRFRANSDTPPQLSKMGGSAWVKAKERASKAVRKVALDLVKLYAERHQAPGFAFP 597

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             +G   +++  + P+ PT  Q  A  D+ +DM Q   M R++ GDVG GKT VA+ A+  
Sbjct: 598  GDGPWQEELEDSFPYEPTPDQLKATADVKRDMEQPQPMDRLVCGDVGFGKTEVAIRAIFK 657

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A+ AG Q  ++AP  +LAQQH+  + +      I V ++      + R+  LE +  G  
Sbjct: 658  AITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTASERKAILEGLKQGTI 717

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
              ++GTH L   S  + KL L++VDE+ RFGV Q+ K+        VL ++ATPIPRTL 
Sbjct: 718  DAVVGTHQLLSKSTSFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLY 777

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++  G  ++S IT  P  R+PIKT +  ++  + V   ++  L  G + +++ P++E  +
Sbjct: 778  MSLSGVREMSLITTPPPLRRPIKTHLAALDE-EAVRSAIRQELDRGGQVFYVVPRVEGIE 836

Query: 497  ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                    E    L +      + + HG+M++ + ES M +F  G   +++ TT++E G+
Sbjct: 837  --------EVAAQLRQMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGL 888

Query: 556  DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN 613
            D+   + I+IE+A  FGLAQL+QLRGRVGR    +   L Y     LS  +  RL  ++ 
Sbjct: 889  DIPRVNTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGDASLSDAARQRLRAIQE 948

Query: 614  T---EDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHIL 667
                  G+ +A  D++ R  G +LG++QSG  +   F +    L +SL EI  +D   + 
Sbjct: 949  FAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPAVD 1008

Query: 668  TQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
                DL          +    +   A++
Sbjct: 1009 DTQVDLQVTAFLPADWITDSDEKMAAYR 1036


>gi|21552593|gb|AAM54733.1| RecG [Azotobacter vinelandii]
          Length = 381

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 174/383 (45%), Positives = 242/383 (63%), Gaps = 8/383 (2%)

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A+EAG Q  +MAP  ILA+QHY    ++ +   I +  + G +    R  ALE+I  G
Sbjct: 1   LQAIEAGYQVALMAPTEILAEQHYLNFARWLEPLGIDLAWLAGKLKGKARGAALEKI-AG 59

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK----ATAPHVLLMTATP 430
              +++GTHALFQD +++  L L I+DEQHRFGVQQRL L QK       PH L+MTATP
Sbjct: 60  GCPMVVGTHALFQDEVRFRNLALAIIDEQHRFGVQQRLALRQKGIDGRLCPHQLIMTATP 119

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +++  D+D S + E P GR P+ T++I  +R  EVIER++    EG++AYW+C 
Sbjct: 120 IPRTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRLEVIERVRAACLEGRQAYWVCT 179

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            IEE +E   ++    F  L       ++ +IHGRM   +K +VM+ FK G  +LL+ATT
Sbjct: 180 LIEESEELTCQAAETTFEELSAALGELAVGLIHGRMKPAEKAAVMEEFKAGRLQLLVATT 239

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           VIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLYH PLS+    RL+
Sbjct: 240 VIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSTASHCVLLYHAPLSQLGRERLA 299

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       LL   R+ A+ +L  
Sbjct: 300 IMRETSDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPAVREAAQDLLAC 359

Query: 670 DPDLTSVRGQSIRILLYLYQYNE 692
            P   S   +  R L +  QY +
Sbjct: 360 WPQHVSPLLE--RWLRHGQQYGQ 380


>gi|254372994|ref|ZP_04988483.1| transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. novicida GA99-3549]
 gi|151570721|gb|EDN36375.1| transcription-repair coupling factor,ATP-dependent [Francisella
           novicida GA99-3549]
          Length = 1141

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 142/417 (34%), Positives = 218/417 (52%), Gaps = 13/417 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  + +   G   +++ +   +   + P+  T  Q SAI D+ +DM     M R++ G
Sbjct: 566 LEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICG 625

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT +A+ A   A +   Q  I+ P  ILAQQHY   K    NT + +E+IT +  
Sbjct: 626 DVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKT 685

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++  E +  G   IIIGTH L    I +  L L+I+DE+HRFGV Q+ KL      
Sbjct: 686 PKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAE 745

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L M+ATPIPR+L +      D+S I   PA R  +KT +   +  + + E +     
Sbjct: 746 IDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDN-NIIREAVSRETI 804

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  ++E  ++       E    L       IAI HG+MS+ + + VM  FK+ 
Sbjct: 805 RGGQIFYLYNKVETIQKKK-----EILQELFPRL--RIAIAHGQMSEKEIQKVMFDFKHN 857

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--P 598
              +L+ TT+IE GID+ +A+ +IIE+A + GLAQLHQLRGRVGR    +   +L     
Sbjct: 858 KYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEA 917

Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            ++K++  RL  + N E    GF +A  DL+ R  GEILG +QSG    +     + 
Sbjct: 918 SITKDALKRLEAISNAESLGGGFTLANHDLEIRGAGEILGEEQSGNIDGIGLNLYMD 974


>gi|172038623|ref|YP_001805124.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51142]
 gi|171700077|gb|ACB53058.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51142]
          Length = 1159

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 144/451 (31%), Positives = 241/451 (53%), Gaps = 18/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++     + LA  +  L  ++        P+  +    Q++  + P+ PT  Q  
Sbjct: 561 WQKSKQKVRKNIKKLAVDLINLYAKRAKNTGFTYPL--DTPWQQELEDSFPYQPTPDQLK 618

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIGILAQQHY 338
           AI+D+  D+     M R++ GDVG GKT VA+ A+  AV +G  Q   +AP  IL QQHY
Sbjct: 619 AIQDVKIDLESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGHKQVAFLAPTTILTQQHY 678

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             +K+      I + ++      + +++ ++R+A G+  I++GT  L   S+++  L L+
Sbjct: 679 HTLKERFAPYPINIGLLNRFRTTSEKKEIIQRLATGELDIVVGTQQLLGKSVKFKDLGLL 738

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ RFGV Q+ K+ +  +   VL +TATPIPRTL ++  G  ++S IT  P  R+PI
Sbjct: 739 VVDEEQRFGVNQKEKIKEIKSHVDVLTLTATPIPRTLYMSLSGIREMSLITTPPPSRRPI 798

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           KT +   N  D V   ++  L  G + +++ P++E  +E                 ++ +
Sbjct: 799 KTHLSRYN-PDVVRTAIRNELDRGGQVFYVVPRVEGIEEV-------AAQIKTMVPSARM 850

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           AI HG+M   + E  M SF NG   +L+ TT++E G+D+   + II+E+A+ FGLAQL+Q
Sbjct: 851 AIAHGQMDVNELEITMLSFNNGDADILVCTTIVESGLDIPRVNTIIVEDAQKFGLAQLYQ 910

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR    +   LLY     L++ +  RL  L+       G+ +A  D++ R  G +
Sbjct: 911 LRGRVGRSGIQAHAWLLYPSKAQLTETARQRLRALQEFSQLGSGYQLATRDMEIRGVGNL 970

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG +QSG  + +    EL+  +L+ A ++ +
Sbjct: 971 LGAEQSGQMESI--GFELYMEMLQEAIREIQ 999


>gi|145589112|ref|YP_001155709.1| transcription-repair coupling factor [Polynucleobacter necessarius
            subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047518|gb|ABP34145.1| transcription-repair coupling factor [Polynucleobacter necessarius
            subsp. asymbioticus QLW-P1DMWA-1]
          Length = 1180

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 171/607 (28%), Positives = 265/607 (43%), Gaps = 38/607 (6%)

Query: 99   GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKN--RIIMVHPHYIFHNSQDVNFPLI 156
            G +T   F       +N+         T   ++ K         P  +F +  ++     
Sbjct: 441  GLVTAPLFNGFLWSAENLLVLTEAELFTSTARQRKKSKGSENADPDMLFKDLSELKIG-- 498

Query: 157  EAVYSLPTGLSVDLFKKIIVEALS---RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN-- 211
            + V     G+    ++ +++  L+     P+  E++      + +     +   ++    
Sbjct: 499  DPVVHAEHGI--GRYQGLVLLNLAPPKEAPIFEEFLHLQYAGQATLYVPVQQLQMVTRYA 556

Query: 212  ---PRKAK-----DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263
               P  A        +W    R+        A ++  L   +  +K      +       
Sbjct: 557  GSDPDSAPLHQLGSGQWDKAKRKAAQQIRDTAAELLGLYAARAIRKGHAFEFSAHD--YA 614

Query: 264  KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
                +  F  T  Q +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q
Sbjct: 615  AFSESFGFEETPDQANAIAAVIGDMTSGTPMDRLVCGDVGFGKTEVALRASFVAVMGGKQ 674

Query: 324  AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
              I+AP  +LA+QH    K    +  + +  ++          ALE IA G A IIIGTH
Sbjct: 675  VAILAPTTLLAEQHVATWKDRFADWPVRIVELSRFKTTKEINAALEAIAKGDADIIIGTH 734

Query: 384  ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
             L     Q+  L LVIVDE+HRFGV+Q+  L        +L +TATPIPRTL +   G  
Sbjct: 735  KLLSKETQFANLGLVIVDEEHRFGVRQKDALKVLRAEVDILTLTATPIPRTLGMAMEGLR 794

Query: 444  DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
            ++S I   P  R  IKT +        + E +   +  G + Y++  ++E  +       
Sbjct: 795  ELSIIATAPQKRLAIKTFVRREGD-GVIREAVLREIKRGGQVYFLHNEVETIQNRKHA-- 851

Query: 504  VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
                  L     + I++ HG+M + + ESVM  F      +L+ TT+IE GIDV  A+ I
Sbjct: 852  ---LQELIPE--ARISVAHGQMHERELESVMREFVTQRTNILLCTTIIETGIDVPTANTI 906

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY---TRLSVLKNTEDGF 618
            I+  A+ FGLAQLHQLRGRVGR    +   LL   P  LSK +      +  ++    GF
Sbjct: 907  IMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDPEALSKQAQLRLNAIQAMEELGSGF 966

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A  DL+ R  GE+LG KQSG    +  Q  L+  +L  A K  +    ++PDL S   
Sbjct: 967  YLAMHDLEIRGAGEVLGDKQSGEIHEIGFQ--LYTEMLNRAVKSLRS--GKEPDLLSPLQ 1022

Query: 679  QSIRILL 685
             +  + L
Sbjct: 1023 ATTDVNL 1029


>gi|164685710|ref|ZP_01946737.2| transcription-repair coupling factor [Coxiella burnetii 'MSU Goat
            Q177']
 gi|212218583|ref|YP_002305370.1| transcription-repair coupling factor [Coxiella burnetii CbuK_Q154]
 gi|164601218|gb|EAX32680.2| transcription-repair coupling factor [Coxiella burnetii 'MSU Goat
            Q177']
 gi|212012845|gb|ACJ20225.1| transcription-repair coupling factor [Coxiella burnetii CbuK_Q154]
          Length = 1157

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 158/493 (32%), Positives = 242/493 (49%), Gaps = 20/493 (4%)

Query: 199  FPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
              S     +  H P +K    +W     +   +    A ++  +  R+Q     G   ++
Sbjct: 542  LISRYAGADASHAPLQKLGSKQWEKIKEKTQKHIRDAAAELLDIYSRRQAA--TGFTFSI 599

Query: 258  EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
              K      +  PF  T  Q +AI D++ DMS K  M R++ GDVG GKT VA+ A   A
Sbjct: 600  PEKEYSLFRQAFPFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIA 659

Query: 318  VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
            V+   Q  ++ P  +LA+QH+   +    +  + +  I+    Q  R++  + +A G+  
Sbjct: 660  VQNNKQVAVLVPTTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKID 719

Query: 378  IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            IIIGTH L    I++  L L+IVDE+HRFGV Q+ ++        +L +TATPIPRTL +
Sbjct: 720  IIIGTHKLLSKDIRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNM 779

Query: 438  TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +  G  D+S IT  PA R  +KT +   + +  + E +      G + Y++   +     
Sbjct: 780  SLSGIRDLSLITTPPAKRLSVKTFVHYYSPV-LIREAILRENLRGGQVYFLHNDVATLAA 838

Query: 498  SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                   E+  ++     + +AI HG+M + D E VM  F +    LL+ TT+IE GID+
Sbjct: 839  -----TAEKLRTIIPE--ARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDI 891

Query: 558  VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE 615
              A+ III  A+ FGLAQLHQLRGRVGR    +   LL      L+ ++  RLS +   +
Sbjct: 892  PTANTIIINRADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADTEKRLSAISQLD 951

Query: 616  D---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            D   GF +A  DL+ R  GE+LG++QSG    +     L   LLE A    K    ++P 
Sbjct: 952  DLGVGFNLATHDLEIRGAGELLGVEQSGQIHDIGFSLYL--ELLEEAVSALKA--GREPQ 1007

Query: 673  LTSVRGQSIRILL 685
                   +  I L
Sbjct: 1008 FEKPLHAASEIDL 1020


>gi|221195325|ref|ZP_03568381.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626]
 gi|221185228|gb|EEE17619.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626]
          Length = 1150

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 145/451 (32%), Positives = 230/451 (50%), Gaps = 17/451 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W+    +     + LA  +  L  R+      G   + +    +++    P+  T  QE
Sbjct: 559 DWSRATAKARKSAKKLAFDLVDLYTRRAS--VPGYAFSFDTPEQEEMESAFPYQMTPDQE 616

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           SA+ DI  DM  +  M R+L GDVG GKT VAL A   A + G Q +I+ P  ILAQQH+
Sbjct: 617 SALADIKLDMEARKPMDRLLCGDVGFGKTEVALRAAFKACQDGRQVMILCPTTILAQQHF 676

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E          + V +++  +  A +RKALE  A G  ++++GTH L    +  + L LV
Sbjct: 677 ETFFSRFAPFGLQVAVLSRFVTPALQRKALEGFADGSVNVLVGTHRLLSADVNPHDLGLV 736

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGVQ + +L        VL ++ATPIPRT+ +   G  D+S I   P GRKP+
Sbjct: 737 IVDEEQRFGVQHKEQLKNMREQVDVLTLSATPIPRTMQMAMSGVRDMSLIMTPPPGRKPV 796

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           K  +   +  D V   ++  L+   + Y++  ++    ++  R              + +
Sbjct: 797 KVTVGEYD-PDLVSAAIRAELARKGQVYYVSNRVTTIDDAVSRVNEA-------APEARV 848

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+MS  + E VM  F+     +L+ATT+IE GID    + +IIE++E  GLAQL+Q
Sbjct: 849 GVAHGQMSAREVEDVMLRFQEHEIDVLVATTIIESGIDNPHTNTLIIEDSERLGLAQLYQ 908

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           L+GRVGRG + +    ++    PL++ +  RL+ +   +D   G  IA  DL+ R  G +
Sbjct: 909 LKGRVGRGRQQAYAYFMFPAEMPLTEEATARLTAINEYQDLGSGMKIAMRDLEIRGAGSL 968

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           +G +Q G         +L   +L  A  +A+
Sbjct: 969 MGAEQHG--NLSGVGFDLFTQMLGEAVAEAR 997


>gi|148242564|ref|YP_001227721.1| transcription-repair coupling factor [Synechococcus sp. RCC307]
 gi|147850874|emb|CAK28368.1| Transcription-repair coupling factor [Synechococcus sp. RCC307]
          Length = 1183

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 140/485 (28%), Positives = 241/485 (49%), Gaps = 20/485 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W             +A  +  L    +  +  G    V+G    ++  + P+ PT  Q  
Sbjct: 562  WAKTKARARKAVRKVAFDLVKLYA--ERTESPGFAFPVDGPWQNELEDSFPYEPTPDQLK 619

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI ++ +DM Q   M R++ GDVG GKT VAL A+  AV AG Q  ++AP  +LAQQH+ 
Sbjct: 620  AITEVKRDMEQGKPMDRLVCGDVGFGKTEVALRAIFKAVTAGRQTALLAPTTVLAQQHWR 679

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             + +      I V ++      + R++ L+ ++ G   +++GTH L      + +L L++
Sbjct: 680  TLSERFAPYPIKVALLNRFRTASERKEILKGLSDGAIDVVVGTHQLLGKGTSFKQLGLLV 739

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  ++S IT  P  R+PIK
Sbjct: 740  VDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIK 799

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T +  ++  + V   ++  L  G + +++ P++E  +        E    L +      +
Sbjct: 800  THLASLDE-EAVRSAIRQELDRGGQVFYVVPRVEGIE--------EVAGGLRQMLPGLRL 850

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M + + ES M +F  G   +++ TT++E G+D+   + I+IE+++ FGL+QL+Q
Sbjct: 851  LVAHGQMPEGELESAMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDSQKFGLSQLYQ 910

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L Y     LS  +  RL  ++       G+ +A  D++ R  G +
Sbjct: 911  LRGRVGRSGIQAHAWLFYPGDASLSDAARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNL 970

Query: 634  LGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            LG++QSG  + +        L + L EI  +D   +     DL+         +    + 
Sbjct: 971  LGVEQSGQMETIGFDLYMEMLQEELAEIRGQDIPAVDDTQIDLSVTAFIPADWVTEADEK 1030

Query: 691  NEAFQ 695
              A++
Sbjct: 1031 MAAYR 1035


>gi|54026849|ref|YP_121091.1| putative transcription-repair coupling factor [Nocardia farcinica IFM
            10152]
 gi|54018357|dbj|BAD59727.1| putative transcription-repair coupling factor [Nocardia farcinica IFM
            10152]
          Length = 1205

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 142/472 (30%), Positives = 236/472 (50%), Gaps = 18/472 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +AG++  L   +Q     G     +    +++     F+ T  Q 
Sbjct: 584  DWANTKRKARKAVREIAGELVQLYAARQAA--PGHAFGPDTPWQKEMEDAFAFTETVDQM 641

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q V++ P  +LAQQH 
Sbjct: 642  TAIAEVKADMEKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHL 701

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V+ ++     A  R  LE +A G   I++GTH L Q  +++  L LV
Sbjct: 702  QTFTERVAGFPVTVKGLSRFTDPAESRAVLEGMADGSVDIVVGTHRLLQTGVRWKDLGLV 761

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 762  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPV 821

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   N   +V   ++  L    + +++  ++            +R   L     + +
Sbjct: 822  LTYVGAYND-KQVTAAIRRELLRDGQVFYVHNRVSSID-----KAAKRIRDLVPE--ARV 873

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++   E  +  F      +L+ TT+IE G+D+ +A+ +I+E A+  GL+QLHQ
Sbjct: 874  VVAHGQMNEDTLERTVQGFWQREYDVLVCTTIIETGLDISNANTLIVERADTLGLSQLHQ 933

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    D   G  +A +DL+ R  G +
Sbjct: 934  LRGRVGRSRERGYAYFLYPPEKPLTETAYDRLATIAQNSDLGAGMAVAMKDLEIRGAGNV 993

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG +QSG         +L+  L+  A +  +      P +T+   + +RI L
Sbjct: 994  LGAEQSGH--VAGVGFDLYVRLVGEAVEAYRAAADGKP-ITTEEVKEVRIDL 1042


>gi|67921537|ref|ZP_00515055.1| Transcription-repair coupling factor [Crocosphaera watsonii WH
           8501]
 gi|67856649|gb|EAM51890.1| Transcription-repair coupling factor [Crocosphaera watsonii WH
           8501]
          Length = 1160

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 139/451 (30%), Positives = 239/451 (52%), Gaps = 18/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++       LA  +  L  ++        P+  +    Q++  + P+ PT  Q  
Sbjct: 561 WQKSKQKVRKNIRKLAVDLINLYAKRAKNIGFTYPL--DTPWQQELEDSFPYQPTPDQLK 618

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIGILAQQHY 338
           AI+++  D+     M R++ GDVG GKT VA+ A+  AV +G  Q V +AP  IL QQHY
Sbjct: 619 AIQEVKIDLESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGHKQVVFLAPTTILTQQHY 678

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             +K+      I + ++      + +++ ++R++ G+  I++GT  L   S+++  L L+
Sbjct: 679 HTLKERFAPYPINIGLLNRFRTASEKKEIIQRLSTGELDIVVGTQQLLGKSVKFNDLGLL 738

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV Q+ K+    +   VL ++ATPIPRTL ++  G  ++S IT  P  R+PI
Sbjct: 739 VIDEEQRFGVNQKEKIKDMKSHIDVLTLSATPIPRTLYMSLSGIREMSLITTPPPSRRPI 798

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           KT +   N  D V   ++  L  G + +++ P++E  +E                 ++ +
Sbjct: 799 KTHLSRYN-PDAVRNAIRNELDRGGQVFYVVPRVEGIEEV-------AAQIKRMVPSARM 850

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           AI HG+M   + E  M  F NG   +L+ TT++E G+D+   + II+E+A+ FGLAQL+Q
Sbjct: 851 AIGHGQMDVNELEMTMLGFNNGDADILVCTTIVESGLDIPRVNTIIVEDAQKFGLAQLYQ 910

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR    +   LLY     L++ +  RL  L+       G+ +A  D++ R  G +
Sbjct: 911 LRGRVGRAGIQAHAWLLYPSKSELTETARKRLRALQEFSQLGSGYQLATRDMEIRGVGNL 970

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG +QSG  + +    EL+  +L+ + ++ +
Sbjct: 971 LGAEQSGQMESI--GFELYMEMLQESIREIQ 999


>gi|325846766|ref|ZP_08169681.1| transcription-repair coupling factor [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
 gi|325481524|gb|EGC84565.1| transcription-repair coupling factor [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
          Length = 1163

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 133/438 (30%), Positives = 222/438 (50%), Gaps = 18/438 (4%)

Query: 231  DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            DE+    + L   R + +         +    ++   +  +  T SQ  +I +I  DM  
Sbjct: 582  DEIADDLVELYAKRSKARGH---AFAKDTPWQKEFEDSFIYEETDSQLRSIDEIKDDMED 638

Query: 291  KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
               M R+L GDVG GKT VAL A   AV  G Q   + P  ILA+QH++ +++  ++  I
Sbjct: 639  IKPMDRLLCGDVGYGKTEVALRAAFKAVMDGYQVCFLVPTTILARQHFKTMQERFKDFPI 698

Query: 351  IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
               +++  + +  + K +  +  G+  II+GTH L    I++ KL L+I+DE+ RFGV+ 
Sbjct: 699  DCAMLSRFVSKKDQEKYIHNLKSGKIDIIVGTHRLLSKDIKFKKLGLLIIDEEQRFGVRH 758

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            + KL +      VL ++ATPIPRTL ++  G  D+S + E P  R+P+ T ++  +    
Sbjct: 759  KDKLKKLKENIDVLTLSATPIPRTLQMSLTGIRDMSTLDEPPERRQPVNTYVLEYD-FSI 817

Query: 471  VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            +   ++  L    + Y++  ++      N   +      L     + I I HG+MS    
Sbjct: 818  IKRAIEKELDRDGQVYFVYNRV-----YNIDKIYNHLKLLVPD--AKIEIAHGQMSAKSL 870

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E +M+ F +G   +L+ATT+IE G+D+ + + II+ +++  GL+QL+QL+GR+GR    S
Sbjct: 871  EKIMEDFVSGEIDILLATTIIETGMDIQNVNTIIVYDSDMMGLSQLYQLKGRIGRSSRSS 930

Query: 591  SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
                 Y     L++    RL  +K+  D   G+ IA  DL+ R  G ILG  QSG  + +
Sbjct: 931  YAYFTYAKGKVLTEIGEKRLKSIKDFSDFGSGYKIAMRDLELRGAGNILGESQSGQVEAI 990

Query: 646  IAQPELHDSLLEIARKDA 663
                 L+   L+ A   A
Sbjct: 991  GYD--LYVKFLQQAIDKA 1006


>gi|225375822|ref|ZP_03753043.1| hypothetical protein ROSEINA2194_01454 [Roseburia inulinivorans DSM
            16841]
 gi|225212257|gb|EEG94611.1| hypothetical protein ROSEINA2194_01454 [Roseburia inulinivorans DSM
            16841]
          Length = 1183

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 145/457 (31%), Positives = 244/457 (53%), Gaps = 17/457 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     + +AG +  L   +Q ++  G     +    ++     PF  T+ Q+
Sbjct: 575  EWNKTKTKVRGAVKEIAGDLVRLYAVRQSER--GFAYGPDTVWQREFEEMFPFEETEDQD 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+   +DM     M R++ GDVG GKT +A+ A   AV+ G Q   + P  ILAQQHY
Sbjct: 633  LAIEATKKDMESTKIMDRLICGDVGYGKTEIAIRAAFKAVQDGKQVAFLVPTTILAQQHY 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  ++  + ++++        ++K LE++  GQ  IIIGTH L    + +  L L+
Sbjct: 693  NNFVQRMKDFPVNIDLLCRFRSAGEQKKTLEKLKKGQVDIIIGTHRLLSKDVVFKDLGLL 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S + E P  R PI
Sbjct: 753  MIDEEQRFGVTHKEKIKQLKNNIDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPMDRIPI 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + V E +   L+ G +AY++  +++E  +     V  +   L     +++
Sbjct: 813  QTYVMEYNE-ELVREAISRELARGGQAYYVYNRVKEIAD-----VAAKIAELVPE--ANV 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M + + E++M  F NG   +L++TT+IE G+D+ + + +II +A++ GL+QL+Q
Sbjct: 865  AYAHGQMKETELENIMYKFINGEIDVLVSTTIIETGLDISNVNTMIIHDADNMGLSQLYQ 924

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L+Y     L + +  RL+ +K       GF IA  DL+ R  G +
Sbjct: 925  LRGRVGRSNRTAYAFLMYKRDKMLKEVAEKRLAAIKEYTELGSGFKIAMRDLEIRGAGNL 984

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            LG +Q G  + +     L+  +L  A K+AK +  ++
Sbjct: 985  LGAEQHGHMEAVGYD--LYCKMLNEAVKEAKGMKQEE 1019


>gi|212696152|ref|ZP_03304280.1| hypothetical protein ANHYDRO_00688 [Anaerococcus hydrogenalis DSM
            7454]
 gi|212676781|gb|EEB36388.1| hypothetical protein ANHYDRO_00688 [Anaerococcus hydrogenalis DSM
            7454]
          Length = 1163

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 133/438 (30%), Positives = 221/438 (50%), Gaps = 18/438 (4%)

Query: 231  DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            DE+    + L   R + +         +    ++   +  +  T SQ  +I +I  DM  
Sbjct: 582  DEIADDLVELYAKRSKARGH---AFAKDTPWQKEFEDSFIYEETDSQLRSIDEIKNDMED 638

Query: 291  KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
               M R+L GDVG GKT VAL A   AV  G Q   + P  ILA+QH++ +++  +   I
Sbjct: 639  IKPMDRLLCGDVGYGKTEVALRAAFKAVMDGYQVCFLVPTTILARQHFKTMQERFKYFPI 698

Query: 351  IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
               +++  + +  + K +  +  G+  II+GTH L    I++ KL L+I+DE+ RFGV+ 
Sbjct: 699  DCAMLSRFVSKKDQEKYIHNLKSGKIDIIVGTHRLLSKDIKFKKLGLLIIDEEQRFGVRH 758

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            + KL +      VL ++ATPIPRTL ++  G  D+S + E P  R+P+ T ++  +    
Sbjct: 759  KDKLKKLKENIDVLTLSATPIPRTLQMSLTGIRDMSTLDEPPERRQPVNTYVLEYD-FSI 817

Query: 471  VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            +   ++  L    + Y++  ++      N   +      L     + I I HG+MS    
Sbjct: 818  IKRAIEKELDRDGQVYFVYNRV-----YNIDKIYNHLKLLVPD--AKIEIAHGQMSAKSL 870

Query: 531  ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            E +M+ F +G   +L+ATT+IE G+D+ + + II+ +++  GL+QL+QL+GR+GR    S
Sbjct: 871  EKIMEDFVSGEIDILLATTIIETGMDIQNVNTIIVYDSDMMGLSQLYQLKGRIGRSSRSS 930

Query: 591  SCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
                 Y     L++    RL  +K+  D   G+ IA  DL+ R  G ILG  QSG  + +
Sbjct: 931  YAYFTYAKGKVLTEIGEKRLKSIKDFSDFGSGYKIAMRDLELRGAGNILGESQSGQVEAI 990

Query: 646  IAQPELHDSLLEIARKDA 663
                 L+   L+ A   A
Sbjct: 991  GYD--LYVKFLQQAIDKA 1006


>gi|261337278|ref|ZP_05965162.1| transcription-repair coupling factor [Bifidobacterium gallicum DSM
            20093]
 gi|270277644|gb|EFA23498.1| transcription-repair coupling factor [Bifidobacterium gallicum DSM
            20093]
          Length = 1205

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 130/452 (28%), Positives = 224/452 (49%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +       +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 594  DWAATKARAKKHVHEIAENLIKLYAARQS--SKGYAFSKDTPWQKELEDAFPYQETADQL 651

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+  DM ++  M R++ GDVG GKT +A+ A   AV+   Q  ++ P  +L QQH 
Sbjct: 652  TTIDDVKSDMEKEIPMDRLICGDVGFGKTEIAVRAAFKAVQDSKQVAVLVPTTLLVQQHL 711

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++         +  + +A G   ++IGTH L   SI++  L LV
Sbjct: 712  ETFSERFEGFPVTVRAMSRFESTKQINETKKGLADGTVDVVIGTHKLLNPSIKFKDLGLV 771

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 772  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 831

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  ++E+          +    L     + I
Sbjct: 832  LTYVGAYED-AQVTAAIRRELMRGGQVFFLHNRVEDID-----KTAQHVAELVPE--ARI 883

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M     + V+  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 884  GIAHGKMGRKQLDQVIQDFWHRDIDVLVTTTIIETGLDISNANTLIVDHADRFGLSQLHQ 943

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL  +        GF +A +DL+ R  G +
Sbjct: 944  LRGRVGRGHERAYAYFLYDPTKPMTETSHERLVTIAQNTALGSGFDVAMKDLELRGTGNL 1003

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A  + K 
Sbjct: 1004 LGDEQSGHIE--GVGFDLYVRMVTQAIDEYKE 1033


>gi|39995128|ref|NP_951079.1| transcription-repair coupling factor [Geobacter sulfurreducens PCA]
 gi|39981890|gb|AAR33352.1| transcription-repair coupling factor [Geobacter sulfurreducens PCA]
 gi|298504158|gb|ADI82881.1| transcription-repair coupling factor [Geobacter sulfurreducens KN400]
          Length = 1157

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 139/448 (31%), Positives = 232/448 (51%), Gaps = 18/448 (4%)

Query: 222  SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            +  + R A  E+    + +   R+  +       +    + ++   +  +  T  Q +AI
Sbjct: 572  AKGKARAAVQEMAEELLRIYAARQLHEGHR---FSPPDDLYREFEASFAYEETSDQLAAI 628

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +D++ DM+    M R++ GDVG GKT VA+     AV  G Q  ++ P  +LAQQH E  
Sbjct: 629  EDVIADMTSNRPMDRLVCGDVGYGKTEVAMRGAFKAVMDGKQVAVLVPTTVLAQQHLETF 688

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            +       + +E+++       ++  LER+  G   +IIGTH L Q+ + +  L L+IVD
Sbjct: 689  RARLGAYPVTIEMVSRFRTPKEQKDILERVKKGTVDVIIGTHRLLQNDVTFKDLGLLIVD 748

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+ RFGV  + KL +   A  +L +TATPIPRTL ++ +G  D+S I   P  R  +KT 
Sbjct: 749  EEQRFGVTHKEKLKKYKAAVDILTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLAVKTF 808

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            +   +  + + E +   L  G + +++  +++           E    +     + IA+ 
Sbjct: 809  VARTSD-ELIREAVLRELRRGGQVFFVHNRVQSIGA-----WYEHLRRIVPE--AKIAVG 860

Query: 522  HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            HG+M + + E VM  F +G   LL+ TT+IE G+D+  A+ +I++ A+ FGLAQL+QLRG
Sbjct: 861  HGQMDEGELEKVMLGFMHGETNLLLCTTIIESGLDIPSANTLIVDRADTFGLAQLYQLRG 920

Query: 582  RVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636
            RVGR  + +   LL      +S ++  RL +++   +   GF +A  DL+ R  G++LG 
Sbjct: 921  RVGRSRQRAYAYLLIPGEGAISSDARERLRIIQELNELGAGFRLATHDLEIRGAGDLLGA 980

Query: 637  KQSGMPKFLIAQPELHDSLLEIARKDAK 664
            KQSG         +L+  LLE A +  K
Sbjct: 981  KQSG--NIAAVGFDLYTELLEEAVQKLK 1006


>gi|25027590|ref|NP_737644.1| putative transcription-repair coupling factor [Corynebacterium
            efficiens YS-314]
 gi|23492872|dbj|BAC17844.1| putative transcription-repair coupling factor [Corynebacterium
            efficiens YS-314]
          Length = 1218

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 135/454 (29%), Positives = 233/454 (51%), Gaps = 19/454 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G     +    +++  N P+  T+ Q 
Sbjct: 588  DWKNTKKKARAAVREIAGELVELYAKRQAA--PGHAFGPDTPWQKEMEDNFPYVETEDQM 645

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  + +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 646  LAIDAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHK 705

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++      + +  ++     A  ++ L  +A G+  I++GTH L Q  +Q+  L LV
Sbjct: 706  STFEERMAGFPVTIHGLSRFTSTAESKETLAGLASGEVDIVVGTHRLLQTGVQWKNLGLV 765

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    +   VL M+ATPIPRTL ++  G  +++ +   P  R PI
Sbjct: 766  IVDEEQRFGVEHKEHIKALRSHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPI 825

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T + P     +V   ++  L    + ++I  ++ + +        ++   L +    + 
Sbjct: 826  LTYVGPYED-KQVAASIRRELLRDGQVFFIHNKVADIE--------KKARELRDLVPEAR 876

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLH
Sbjct: 877  VVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLH 936

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G 
Sbjct: 937  QLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGN 996

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            +LG +QSG         +L+  L+  A +  + +
Sbjct: 997  VLGAEQSGHI--AGVGFDLYVRLVGEAVEAYRAL 1028


>gi|297616314|ref|YP_003701473.1| transcription-repair coupling factor [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144151|gb|ADI00908.1| transcription-repair coupling factor [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 1081

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 227/472 (48%), Gaps = 22/472 (4%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           ++L + + P   E         K    +W             +A ++  L +    +   
Sbjct: 474 EMLTRYTGPDDKE-----PRLSKLGGTDWEKTKNRVRESIREMAQEL--LRVYALRQTVP 526

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   + +    ++      +  T  Q  A+ ++ +DM     M R++ GDVG GKT VAL
Sbjct: 527 GFAFSPDTVWQKEFEDAFEYEETADQIRAVAEVKKDMETPRPMDRLICGDVGYGKTEVAL 586

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV    Q  I+ P  ILA+QHY+   +  +NT +++E+++       +++ LE +
Sbjct: 587 RAAFKAVMDHKQVAILVPTTILAEQHYQTCLERFKNTPVVIEVLSRFRTPGQQKRILEDL 646

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G   IIIGTH L    +++  L L++VDE+HRFGV+Q+ ++         L ++ATPI
Sbjct: 647 KKGVIDIIIGTHRLLSRDVRFKDLGLLVVDEEHRFGVRQKERIKALKETVDALSLSATPI 706

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL +   G  D+S I   P  R PI T ++  N  D + E ++  +  G + + +  +
Sbjct: 707 PRTLHMALTGLRDLSVIETPPPDRYPITTYVLEYNE-DIIREAIRAEVERGGQVFAVHNR 765

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           I++ +             L       +A  HGR+ + +   +M  F N   ++L+ TT+I
Sbjct: 766 IQDIE-----MFRNHLQMLVPEVKMEVA--HGRVPEDELADIMKRFLNQEFQVLVCTTII 818

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN--SYTRLS 609
           E G+D+ + + +I++ A+  GLAQL+QLRGRVGR + ++     Y P  S    +  RL+
Sbjct: 819 ESGLDMPNVNTLIVDEADRLGLAQLYQLRGRVGRSKRLAYAYFTYRPDKSVTEAAQKRLN 878

Query: 610 VLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            ++       G  IA  DL+ R  G ILG +Q G         +L+  LLE 
Sbjct: 879 AIREFTELGSGMKIALRDLEIRGAGNILGPEQHGYI--AAVGFDLYCRLLEE 928


>gi|160947369|ref|ZP_02094536.1| hypothetical protein PEPMIC_01303 [Parvimonas micra ATCC 33270]
 gi|158446503|gb|EDP23498.1| hypothetical protein PEPMIC_01303 [Parvimonas micra ATCC 33270]
          Length = 1168

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 132/451 (29%), Positives = 230/451 (50%), Gaps = 17/451 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +A  +  L  ++   K  G   + +    ++   +  +  T SQ 
Sbjct: 575  DWIKTKTRAKKVLDEIAIDLVQLYAKR--DKIRGFAFSEDTTWQKEFEDSFIYEETYSQL 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI +I +DM Q   M R+L GDVG GKT VAL A   A+    Q   + P  ILAQQHY
Sbjct: 633  RAINEIKKDMEQFKPMDRLLCGDVGYGKTEVALRAAFKAMMDDKQVAFLVPTTILAQQHY 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                    N  + +E+++     A +++ L+ + +G+ +++IGTH L   ++++  L L+
Sbjct: 693  NTAIDRVGNFPVEIEMLSRFRSPAKQKEILKNVKNGKVNLLIGTHKLLSKNLEFKDLGLL 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L +      VL ++ATPIPRT+ ++ +G  D+S + + P  R  I
Sbjct: 753  IIDEEQRFGVKHKETLKKIKENIDVLSLSATPIPRTMQMSLVGIRDMSILDDPPEERVTI 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T ++  N    + E +   +  G + Y++  +I      +   +    + L     + I
Sbjct: 813  ATFVLEYND-SIIREAIYKEIDRGGQVYFVYNRI-----HDMDKMYVELSRLVPD--AKI 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ H ++S+ + E++M  F+ G   +L+ TT+IE G+D+ + + +II +A+  GL+QL+Q
Sbjct: 865  AMAHSKLSNKELENIMYDFQEGEYDILLCTTIIETGMDIKNCNTMIIYDADKMGLSQLYQ 924

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEI 633
            L+GR+GR    +     Y     L++ S  RL  ++       GF IA  DL+ R  G I
Sbjct: 925  LKGRIGRSTRRAYAYFTYEKDKVLTEISEKRLMAIRDFSEFGSGFKIAMRDLELRGAGNI 984

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            LG  QSG  + +    E++  +LE + K  K
Sbjct: 985  LGECQSGHIETI--GYEMYVRMLEESIKTVK 1013


>gi|259507006|ref|ZP_05749906.1| transcription-repair coupling factor [Corynebacterium efficiens
            YS-314]
 gi|259165458|gb|EEW50012.1| transcription-repair coupling factor [Corynebacterium efficiens
            YS-314]
          Length = 1215

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 135/454 (29%), Positives = 233/454 (51%), Gaps = 19/454 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G     +    +++  N P+  T+ Q 
Sbjct: 585  DWKNTKKKARAAVREIAGELVELYAKRQAA--PGHAFGPDTPWQKEMEDNFPYVETEDQM 642

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  + +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 643  LAIDAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHK 702

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++      + +  ++     A  ++ L  +A G+  I++GTH L Q  +Q+  L LV
Sbjct: 703  STFEERMAGFPVTIHGLSRFTSTAESKETLAGLASGEVDIVVGTHRLLQTGVQWKNLGLV 762

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    +   VL M+ATPIPRTL ++  G  +++ +   P  R PI
Sbjct: 763  IVDEEQRFGVEHKEHIKALRSHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPI 822

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T + P     +V   ++  L    + ++I  ++ + +        ++   L +    + 
Sbjct: 823  LTYVGPYED-KQVAASIRRELLRDGQVFFIHNKVADIE--------KKARELRDLVPEAR 873

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLH
Sbjct: 874  VVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLH 933

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G 
Sbjct: 934  QLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGN 993

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            +LG +QSG         +L+  L+  A +  + +
Sbjct: 994  VLGAEQSGHI--AGVGFDLYVRLVGEAVEAYRAL 1025


>gi|227548210|ref|ZP_03978259.1| possible transcription-repair coupling factor [Corynebacterium
            lipophiloflavum DSM 44291]
 gi|227079684|gb|EEI17647.1| possible transcription-repair coupling factor [Corynebacterium
            lipophiloflavum DSM 44291]
          Length = 1191

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 143/491 (29%), Positives = 242/491 (49%), Gaps = 25/491 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W S  R+  A    +A ++  L  ++Q     G     +     ++  N PF  T+ Q 
Sbjct: 577  DWRSTKRKARAAVREIAAELVQLYAKRQAA--PGHAFAPDTPWQVEMEDNFPFVETEDQL 634

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  + +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH+
Sbjct: 635  LAIDAVKEDMEKPTPMDRVIVGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHF 694

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                       + +  ++        ++ L  +A G   ++IGTH L    +Q+  L L+
Sbjct: 695  STFSTRMDGFGVTIRELSRFTSAKESKETLAGLADGSVDVVIGTHRLLATGVQWKNLGLI 754

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +    +   VL MTATPIPRTL ++  G  +++ IT  P  R P+
Sbjct: 755  VVDEEQRFGVEHKEHIKALKSHVDVLTMTATPIPRTLEMSLTGIREMTSITTPPEDRHPV 814

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  ++ + +         R   L     + +
Sbjct: 815  LTYVGPQED-KQIAAAIRRELLRDGQIFYIHNKVADIE-----KAARRVRDLVPE--ARV 866

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS+   E  +  F N    +L+ TT++E G+D+ +A+ +I+ENA++ GL+QLHQ
Sbjct: 867  VVAHGQMSEQLLEQTVQGFWNREYDVLVCTTIVETGLDIANANTLIVENAQNMGLSQLHQ 926

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  + +    LY     L++ SY RL+ +    D   G  +A++DL+ R  G +
Sbjct: 927  LRGRVGRSRDRAYAYFLYPKDKTLTETSYDRLATIAQNNDLGSGIAVAQKDLEMRGAGNV 986

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD-PDLTSVRGQSIRILL------- 685
            LG +QSG         +++  L+  A    K ++T +  D T    + IRI L       
Sbjct: 987  LGAEQSGHI--AGVGFDMYVRLVGEAVDTYKALMTGETVDATGQGPKEIRIDLPVDAHIP 1044

Query: 686  YLYQYNEAFQF 696
              Y  +E  + 
Sbjct: 1045 DTYVNSERLRL 1055


>gi|227552670|ref|ZP_03982719.1| transcription-repair coupling factor [Enterococcus faecium TX1330]
 gi|257897406|ref|ZP_05677059.1| transcription-repair coupling factor [Enterococcus faecium Com12]
 gi|293378835|ref|ZP_06624990.1| transcription-repair coupling factor [Enterococcus faecium PC4.1]
 gi|227178199|gb|EEI59171.1| transcription-repair coupling factor [Enterococcus faecium TX1330]
 gi|257833971|gb|EEV60392.1| transcription-repair coupling factor [Enterococcus faecium Com12]
 gi|292642376|gb|EFF60531.1| transcription-repair coupling factor [Enterococcus faecium PC4.1]
          Length = 1173

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 137/446 (30%), Positives = 232/446 (52%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EWT   R+  +  E +A  +  L   ++ +   G     +    ++     P+S T  Q 
Sbjct: 570  EWTKTKRKVSSKIEDIADDLIKLYAVRESE--KGYAFGPDDAYQKEFENAFPYSETDDQL 627

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 628  RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 687

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 688  ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 747

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 748  IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 807

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E +   +  G + +++  ++E  +       VE    L     + I
Sbjct: 808  QTYVMEKN-PGAIREAIHREMGRGGQVFYLYNRVETIE-----QKVEEIQELVPE--ARI 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ GL+ L+Q
Sbjct: 860  GYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGLSTLYQ 919

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y     L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 920  LRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G         +++  +L  A
Sbjct: 980  LGAQQHGFID--AVGFDMYSQMLSEA 1003


>gi|313676238|ref|YP_004054234.1| transcription-repair coupling factor [Marivirga tractuosa DSM 4126]
 gi|312942936|gb|ADR22126.1| transcription-repair coupling factor [Marivirga tractuosa DSM 4126]
          Length = 1122

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 137/452 (30%), Positives = 226/452 (50%), Gaps = 17/452 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW +  ++     + +A  +  L  ++  K   G   N +  +  ++  +  +  T  Q 
Sbjct: 509 EWENKKKKAKKQVKDIAKDLIELYAKR--KSAPGFACNDDSFLQAELESSFIYEDTPDQA 566

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  D+  DM Q + M R++ GDVG GKT VA+ A   AV+   Q  ++ P  ILA QH+
Sbjct: 567 KSTADVKSDMEQPHPMDRLVCGDVGFGKTEVAIRAAFKAVDNNKQVAVLVPTTILAMQHF 626

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +  +   + VE I         ++ L+R   G+  I+IGTH +    +++  L L+
Sbjct: 627 RTFSERLEKMPVTVEYINRFKSTKQIKEILKRTEEGKVDILIGTHRIVNKDVKFKDLGLL 686

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ +FGV  + KL Q      VL +TATPIPRTL  + +G  D+S I   P  R+P+
Sbjct: 687 VIDEEQKFGVSVKDKLKQFRVNVDVLTLTATPIPRTLHFSLMGARDLSVIQTPPPNRQPV 746

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            T +   N  + + + +   L  G + +++  +I + ++            L     + I
Sbjct: 747 TTALHTFNE-EILRDAIAFELQRGGQVFFVHNRIGDIEQVGNII-------LKLVPDARI 798

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+M     E VM  F  G   +L++T +IE G+D+ +A+ III +A  FG++ LHQ
Sbjct: 799 GVAHGQMDGAKLEKVMMRFIEGEYDVLVSTNIIESGLDIPNANTIIINHAHMFGMSDLHQ 858

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           +RGRVGR  + + C LL  P   LS +S  RL+ L+      DGF +A  DL  R  G +
Sbjct: 859 MRGRVGRSNKKAFCYLLTPPTIGLSSDSRKRLTTLEEFSDLGDGFKVAMRDLDIRGAGNM 918

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           LG +QSG    L     ++  +L+ A  + K 
Sbjct: 919 LGAEQSGFITDLGFD--MYHKILDDAVAELKE 948


>gi|325838706|ref|ZP_08166621.1| transcription-repair coupling factor [Turicibacter sp. HGF1]
 gi|325490756|gb|EGC93063.1| transcription-repair coupling factor [Turicibacter sp. HGF1]
          Length = 1176

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 129/430 (30%), Positives = 219/430 (50%), Gaps = 15/430 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            + +  Q +   G   + +           P+  T+ Q  A+ +I +DM Q + M R+L G
Sbjct: 587  IKIYAQREHLPGYAFSKDTIEQHAFENAFPYVETEDQLKAVAEIKEDMEQPHPMDRLLIG 646

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VA+ A   AV  G Q   +AP  IL +QHYE      ++  + + ++   + 
Sbjct: 647  DVGYGKTEVAMRAAFKAVMDGKQVAYLAPTTILTKQHYESFVSRFKDFPVKIGLLNRYVS 706

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               +++ L  I  G+  I++GTH L    +++  L L+I+DE+ RFGV+ + K+ +  T 
Sbjct: 707  LKEQQELLTNIKSGKIDIVVGTHRLLSKDVKFKDLGLLIIDEEQRFGVEHKEKIKEFKTE 766

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL +TATPIPRTL ++ +G   +S I   P  R P++T ++  +    + + ++  L+
Sbjct: 767  VDVLTLTATPIPRTLQMSMIGIRSLSLIETPPMNRYPVQTYVLEEHD-GVIRDAIERELA 825

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
               + +++  ++ + +         R   L     + +   HG+MS    E  M  F++ 
Sbjct: 826  RDGQVFYLYNRVSDIE-----KRAARIKKLVPD--AIVEYAHGQMSKEQLEQTMADFEDK 878

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
               +L+ TT+IE GID+ +A+ +II ++   GL+QL+QLRGRVGR + I+    +Y    
Sbjct: 879  KFNVLVCTTIIETGIDIPNANTLIISDSYRLGLSQLYQLRGRVGRSDRIAYAYCMYPKNK 938

Query: 600  -LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             L++N+  RL  +K       GF IA  DL  R  G++LG +Q G         +L+  L
Sbjct: 939  VLTENAEKRLQTIKEFTELGSGFKIAMRDLAIRGAGDMLGAQQYGFIDT--VGLDLYTQL 996

Query: 656  LEIARKDAKH 665
            L  A   A+ 
Sbjct: 997  LSEAVVHARE 1006


>gi|326798757|ref|YP_004316576.1| transcription-repair coupling factor [Sphingobacterium sp. 21]
 gi|326549521|gb|ADZ77906.1| transcription-repair coupling factor [Sphingobacterium sp. 21]
          Length = 1112

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 136/459 (29%), Positives = 228/459 (49%), Gaps = 18/459 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    R      + +A  +  L    Q K + G   + +  +  ++  +  +  T  QE 
Sbjct: 509 WDKLKRTTKKKVKDIARDLIKLYA--QRKAQTGNAFSPDTYLQTELEASFIYEDTPDQEK 566

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+ +DM   + M R++ GDVG GKT VA+ A   AV    Q  ++ P  ILA QH+ 
Sbjct: 567 ATNDVKKDMEAPHPMDRLVCGDVGFGKTEVAVRAAFKAVADSKQVAVLVPTTILALQHHR 626

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +     ++ I         +  L+R+A G+  I+IGTH L    +++  L L+I
Sbjct: 627 TFSERLKGFPCNIDYINRFKTSKEIKDTLKRLAEGEIDIVIGTHRLVSKDVKFKDLGLLI 686

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L +TATPIPRTL  + +G  D+S I+  P  R+P++
Sbjct: 687 IDEEQKFGVGVKEKLKQLRVNVDTLTLTATPIPRTLHFSLMGARDLSIISTPPPNRQPVQ 746

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N    + E +   ++ G + ++I  ++++      R +      L  +  +   
Sbjct: 747 TELHVFNE-KLIQEAVAYEINRGGQVFFIHNRVQDL-----RQLGALITKLVPN--ARCG 798

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG++     E VM  F N    +L+ATT+IE G+D+ +A+ III +A  FGL+ LHQ+
Sbjct: 799 VAHGQLEGDALEDVMLKFINHEFDVLVATTIIEAGLDIPNANTIIINHAHMFGLSDLHQM 858

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RLS ++       GF +A  DL  R  G +L
Sbjct: 859 RGRVGRSNKKAFCYLLSPPLSTLTPEARKRLSAIEEFSELGSGFNVAMRDLDIRGSGNLL 918

Query: 635 GIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQD 670
           G +QSG      F +    L +++ E+   + + +  ++
Sbjct: 919 GAEQSGFIAEIGFEMYHKILDEAIQELKDDEFEGLFKEE 957


>gi|86135186|ref|ZP_01053768.1| transcription-repair coupling factor [Polaribacter sp. MED152]
 gi|85822049|gb|EAQ43196.1| transcription-repair coupling factor [Polaribacter sp. MED152]
          Length = 1110

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 138/451 (30%), Positives = 229/451 (50%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++  A  + +A  +  L  +++ +   G     +  I  ++  +  +  T  Q S
Sbjct: 503 WKKIKQKTKARVKHIAFNLIQLYAKRKLQ--KGFAFGPDTHIQHELEGSFMYEDTPDQYS 560

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D+ +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  I+ P  ILA QHY+
Sbjct: 561 ATQDVKRDMEKDQPMDRLVCGDVGFGKTEVAVRAAFKAVDNGKQVAILVPTTILAFQHYQ 620

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  I ++ +        +  A+  +  G   IIIGTH L    I++  L L+I
Sbjct: 621 TFSERLKDFPIKIDYLNRFRTAKQKTAAINGVNDGSVDIIIGTHQLTNQRIKFKDLGLLI 680

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL         L +TATPIPRTL  + +   D+S I   P  R PI+
Sbjct: 681 IDEEQKFGVAVKDKLKTLKENVDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRHPIE 740

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + +I  +  + + + +   +S G + ++I  +I+  KE            L    ++ I 
Sbjct: 741 SNVIRFSE-ETIRDAISYEISRGGQVFFIHNRIDNIKEVAG-----LLQRLVP--SAKIG 792

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E +M  F NG   +L++TT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 793 IGHGQMEGKKLEELMFGFMNGEFDVLVSTTIIESGLDVPNANTIFINNANNFGLSDLHQM 852

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   ++ ++  R+  L    D   G  IA +DL+ R  G++L
Sbjct: 853 RGRVGRSNKKAFCYFITPPYHMMTDDARKRIEALVLFSDLGSGINIAMKDLEIRGAGDLL 912

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG    +      +  +L+ A ++ K 
Sbjct: 913 GGEQSGFINDIGFD--TYQKILKEAIEELKE 941


>gi|291569965|dbj|BAI92237.1| transcriptional-repair coupling factor [Arthrospira platensis
            NIES-39]
          Length = 1167

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 142/454 (31%), Positives = 234/454 (51%), Gaps = 21/454 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     +     + LA  +  L   +  K     P   +    Q++  + P+ PT  Q  
Sbjct: 568  WEKNREKVRKSVKKLAVDLLKLYAERSQKTGFSYPH--DTPWQQEMEDSFPYKPTPDQLK 625

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
              +D+ +DM     M R++ GDVG GKT VA+ A+  AV  G Q   +AP  IL QQHY 
Sbjct: 626  CSQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTGGKQVAFLAPTTILTQQHYH 685

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +K+      I + ++      + ++   +++  G+  II+GTH++    I++  L L++
Sbjct: 686  TLKERFAPYPIEIGLLNRFRSASEKKLIQQKLITGEIDIIVGTHSVLSKHIKFRDLGLLV 745

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV Q+ K+    T   VL +TATPIPRTL +   G  ++S IT  P  R+PIK
Sbjct: 746  VDEEQRFGVNQKEKIKALKTHVDVLTLTATPIPRTLYMALSGIREMSLITTPPPSRRPIK 805

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T + P+N+ + +   +   L  G + +++ P+IE  +E +               ++ +A
Sbjct: 806  THLGPLNQ-ETIRAAICQELDRGGQVFYVVPRIEGIEEKS-------AAIREMVPSARLA 857

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M   + ES+M +F  G   +L+ TT+IE G+D+   + I++E+A  FGL QL+QL
Sbjct: 858  IAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIPRVNTILVEDAHKFGLGQLYQL 917

Query: 580  RGRVGRGEEISSCILLY------HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
            RGRVGR    +   L Y         L++++  RL  +K       G+ +A  DL+ R  
Sbjct: 918  RGRVGRAGAQAHAWLFYPIKGDGQAALTEDAVKRLRAIKEFTQLGSGYQLAMRDLEIRGA 977

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            G+ILG +QSG    +     L+  +L+ A ++ +
Sbjct: 978  GDILGAQQSGQMNAIGFD--LYTEMLQEAIQEVR 1009


>gi|282850657|ref|ZP_06260036.1| transcription-repair coupling factor [Veillonella parvula ATCC
           17745]
 gi|282580150|gb|EFB85554.1| transcription-repair coupling factor [Veillonella parvula ATCC
           17745]
          Length = 1098

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 145/581 (24%), Positives = 274/581 (47%), Gaps = 44/581 (7%)

Query: 106 FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN----SQDVNFPLIEAVYS 161
           + ++   L+N   +G++I              +    Y+ HN     + +    IE    
Sbjct: 402 YGQQKRKLRNKPKKGQEI---------NYFTDLTPGDYVVHNMHGIGKYIGLKTIE---- 448

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
              G+     +  I  A +    L  ++  + L +       E    +    K    +W+
Sbjct: 449 -TEGIH----RDYIEIAYAGTDKL--FLPANNLDQLQKYIGNE--GDVPRINKMGGRDWS 499

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
               +     + LA ++  +    Q +   G     +    Q+     P+  T+ Q  A 
Sbjct: 500 KVVSKAKKSIDDLADKLVEIYA--QREITEGFAFLPDQPWQQEFEDAFPYEETEDQLQAT 557

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +I + M +   M R+L GDVG GKT VA+ A+  AV +G Q  ++ P  +LAQQH++  
Sbjct: 558 AEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLVPTTVLAQQHFQTF 617

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
                   + V+++      + +++ L+ +  G   ++IGTH+L    + +  L +++VD
Sbjct: 618 LNRFAPFGVKVDVLNRFRTTSEKKQILKGVEDGSIDVLIGTHSLLNKKVVFKDLGMLVVD 677

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+ RFGV Q+ K  + A+   VL ++ATPIPRTL ++ +G  ++S I   P  R P++T 
Sbjct: 678 EEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGVREMSVINTPPEERLPVQTY 737

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           ++  + ++ + + +K  L+ G + Y++  ++          + E   S       ++A  
Sbjct: 738 VVEYD-MNLIADAIKRELARGGQVYFVYNRVASIN-----HMGELLESALPGLRYAVA-- 789

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M+    E +M  F  G   +L++T++IE G+D+ +A+ III +A+  GL+QL+Q+RG
Sbjct: 790 HGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQLYQMRG 849

Query: 582 RVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636
           RVGR    +    +Y P   LS+ +  RL  ++   +   GF +A  DL+ R  G +LG 
Sbjct: 850 RVGRSRRRAYAYFMYRPDKILSEAAEKRLKAIEEFTELGAGFKLAMRDLEIRGAGNLLGS 909

Query: 637 KQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           +Q G      F +    L +++ +   K+ +  ++ DP + 
Sbjct: 910 QQHGNIASVGFGMYVSMLEEAIAKAQNKEVERDVSIDPAID 950


>gi|319440509|ref|ZP_07989665.1| ATP-dependent DNA helicase [Corynebacterium variabile DSM 44702]
          Length = 745

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 202/696 (29%), Positives = 323/696 (46%), Gaps = 81/696 (11%)

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFF----YRKTEMLKNVFFEG 120
            E    T    +        + RR  + +L   T  +    F    +    M +     G
Sbjct: 63  EEGDRFTCLAEVLTAQVQDNRGRRGPREILQF-TFRVADTVFSSALFGNVRMHQPFVTPG 121

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIF-------------HNSQDVNFPLI----------- 156
            K+  +G +   +++  + +P YI                  +  F              
Sbjct: 122 AKLMFSGTLGIWRDQWQLKNPSYITLHPAPTPDGHRRTDEEYEAAFGAFGPLATIVDVAG 181

Query: 157 -------------EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE-----KDLLQKKS 198
                           Y    G S      ++   L+ +    E +       D  Q   
Sbjct: 182 GMRAAQKVLSHPWLPTYRRRPGTSTAEVTAVMDHVLAAMGEPSEMLPRVPGAPDWPQIDG 241

Query: 199 FP--SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
            P    A A   +H P +    +    AR RL ++E L  Q+ + L R         P+ 
Sbjct: 242 APVLDFATALRHVHRPPE----DGPDAARTRLKFNEALGLQLVMALRRADSTARHARPVV 297

Query: 257 VEGKIAQK--ILRNIPFSPTKSQESAIKDILQDMSQKN----RMLRILQGDVGSGKTLVA 310
                ++   +L  +P+  T  Q+ A+  I   M+        M  +LQGDVGSGKT+VA
Sbjct: 298 PVAPDSRYTALLDRLPYDLTAPQQDALSTIGDAMAGTTDTVTPMSMLLQGDVGSGKTVVA 357

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT---QIIVEIITGNMPQAHRRKA 367
           L+AM   V++G Q   +AP  +LA QH   +    +     Q+ V ++TG+M  A R+ A
Sbjct: 358 LLAMLRVVDSGAQCAFLAPTEVLAVQHAGTLTGLLERIDGRQVTVTLLTGSMTAAERKAA 417

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA---TAPHVL 424
           L  I  G + I++GTHA+ QDS+ ++ L +V+VDEQHRFGV+QR KL + A     PH+L
Sbjct: 418 LLDIISGTSDIVVGTHAIIQDSVDFFDLGMVVVDEQHRFGVRQRDKLRENAPVERTPHLL 477

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVLSE 481
           +MTATPIPRT+ +T  GD+ +  +T  P+GR  + T ++P    N +D V   ++  ++ 
Sbjct: 478 VMTATPIPRTVAMTMFGDLSVCTLTGSPSGRGKVDTFVVPTFKRNWVDRVFAVIREQVAS 537

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKN 539
           G +A+ + P+I+ +   +     +    L     +   I  +HGRM +  K  VM    +
Sbjct: 538 GHRAFIVVPRIDGEGGVD-----DVATRLESGVLTGLRIGRLHGRMDN--KAEVMADLAS 590

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+ATTV+EVG+D+ +A+++++ +AE+FG++QLHQLRGRVGRG + S C L    P
Sbjct: 591 GEIDVLVATTVVEVGVDIPEATVMVVVDAENFGVSQLHQLRGRVGRGADNSWCFLCTAVP 650

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS--LLE 657
             + S  RL  +  T DGF +AE DL+ R EG++LG  QSG     +    L D   ++E
Sbjct: 651 EEEASSRRLQSIAATSDGFALAELDLRTRTEGDVLGESQSGSRARRVTLLSLADDAVVIE 710

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            AR+ A+ ++  D  L   R     I     ++ E 
Sbjct: 711 EARRYAEDLVGYDTALA--RALVAEIADDDQEFIER 744


>gi|302669007|ref|YP_003832832.1| ATP-dependent DNA helicase RecG2 [Butyrivibrio proteoclasticus
           B316]
 gi|302397347|gb|ADL36250.1| ATP-dependent DNA helicase RecG2 [Butyrivibrio proteoclasticus
           B316]
          Length = 668

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 200/651 (30%), Positives = 318/651 (48%), Gaps = 38/651 (5%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K    L K     N    R+       P S++D           E  +V + G +     
Sbjct: 8   KTEEMLEKKGIENNFQLRRW------LPRSYVDYSVATG---CMEGSVVCV-GVMLSCEK 57

Query: 82  FQLQKRRPYKI-LLNDGTGEITLLFFYRKTEMLKNVF--FEGRKITVTGKIKKLKNRIIM 138
            + QK   Y    + D T  +             N +  F G+ + V G++K       +
Sbjct: 58  LKSQKDVGYIYSRVQDLTTNLIFKVIIFNQPYAFNTYHDFIGKNVLVCGEMKYEYGSYKI 117

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
           V P     + +  N   +  +Y    G      +K I E  S L    + +  D  +K +
Sbjct: 118 VGPAVFTDDVE--NNKRVLPIYPKVAGTKPFYVRKKIYE--SCLEGEEDSLPSDFKKKHN 173

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258
              I+ +   +HNP   ++      A ERL Y+++        L+ +  K E        
Sbjct: 174 LAGISWSLYELHNPSSYQNL---KKAEERLLYEDMFYFAALNELVNR--KDEPNCAPMAN 228

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             +   + +   ++ T  Q+SA   I   M+    +  ++QGDVG GKT++A +AMA AV
Sbjct: 229 VSLCMLLTQRFGYALTPDQQSAFFKISSYMTNGQHLRALVQGDVGCGKTIIAFLAMAQAV 288

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            +G QA++MAP  +LA+QH   +KK     +  +    G  P     K L++I  G+   
Sbjct: 289 GSGKQAILMAPTKVLAEQHANQLKKLLPEYEDKIYYAGGKAPLK---KDLKKIETGEYLF 345

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           I+GTHAL  + + Y    +V++DE+H+FGV QR    ++    H + M+ATPIPRTL  T
Sbjct: 346 IVGTHALISEKVHYKDPGIVVIDEEHKFGVDQRSAFEKQKKGIHSISMSATPIPRTLAKT 405

Query: 439 SLGD-IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EK 495
             GD  ++  I  KP GRKP+ TV    +  D +   ++  LS  ++ Y +CP IE  ++
Sbjct: 406 IYGDGTEVFIIRTKPNGRKPVFTV---YDNGDNIPLYVRTALSRNEQVYVVCPAIEVDDE 462

Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           K     SV +        F   +I I++G+MS  D + V+D FKNG  ++LI+TTV+EVG
Sbjct: 463 KMEGVVSVKDAAEKYASWFPDINIGILNGKMSAADTKKVLDDFKNGVTRILISTTVVEVG 522

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +A++I+++NAE FGLA +HQLRGRVGRG + S C+L+     S     R+  L +T
Sbjct: 523 VDVPNATLIVLQNAERFGLAGMHQLRGRVGRGSKQSCCMLI-----SAQENPRIHTLCST 577

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            DGF IA+ DL+ RK G + G++QSG  K+ + +   ++ + E  R + K 
Sbjct: 578 TDGFEIAKMDLEMRKSGSLFGLEQSGFNKY-VQEIIDNNEVYEKVRTEVKD 627


>gi|257783934|ref|YP_003179151.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469]
 gi|257472441|gb|ACV50560.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469]
          Length = 1147

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 144/451 (31%), Positives = 231/451 (51%), Gaps = 17/451 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W+    +     + LA  +  L  R+      G   +++    +++  + P+  T  QE
Sbjct: 556 DWSRATNKARKSAKKLAFDLVDLYTRRAS--VPGYAFSLDTPAQEEMESSFPYQLTPDQE 613

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           SA+ DI  DM  +  M R+L GDVG GKT VAL A   A +   Q +I+ P  ILAQQHY
Sbjct: 614 SAVADIKLDMEARKPMDRLLCGDVGFGKTEVALRAAFKACQDARQVMILCPTTILAQQHY 673

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E          + V +++  +  A +RKALE  A G   +++GTH L    +  + L LV
Sbjct: 674 ETFFSRFAPFDLKVSVLSRFVTPAQQRKALEGFADGTIDVLVGTHRLLSADVNPHDLGLV 733

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGVQ + +L        VL ++ATPIPRT+ +   G  D+S I   P GRKP+
Sbjct: 734 IIDEEQRFGVQHKEQLKNMREQVDVLTLSATPIPRTMQMAMSGVRDMSLILTPPPGRKPV 793

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +  +   N  D V   ++  L    + Y++  ++    E+  R              + +
Sbjct: 794 QVTVGEYN-PDLVSAAIRSELEREGQVYYVSNRVTTIDEAVARVEEA-------APEARV 845

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+MS  + E+VM +F+     +L+ATT+IE GID    + +IIE+++  GLAQL+Q
Sbjct: 846 GVAHGQMSAREVENVMLAFQEHEIDVLVATTIIESGIDNSHTNTLIIEDSQRLGLAQLYQ 905

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           L+GRVGRG + +    ++    PL++ +  RL+ +   +D   G  IA  DL+ R  G +
Sbjct: 906 LKGRVGRGRQQAYAYFMFPAELPLTEEATERLTAINEFQDLGSGMRIAMRDLEIRGAGSL 965

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           +G +Q G         +L   +L  A  +A+
Sbjct: 966 MGAEQHG--NLSSVGFDLFTQMLGEAVAEAR 994


>gi|284054183|ref|ZP_06384393.1| transcription-repair coupling factor [Arthrospira platensis str.
           Paraca]
          Length = 1152

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 142/454 (31%), Positives = 234/454 (51%), Gaps = 21/454 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +     + LA  +  L   +  K     P   +    Q++  + P+ PT  Q  
Sbjct: 553 WEKNREKVRKSVKKLAVDLLKLYAERSQKTGFSYPH--DTPWQQEMEDSFPYKPTPDQLK 610

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             +D+ +DM     M R++ GDVG GKT VA+ A+  AV  G Q   +AP  IL QQHY 
Sbjct: 611 CSQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTGGKQVAFLAPTTILTQQHYH 670

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            +K+      I + ++      + ++   +++  G+  II+GTH++    I++  L L++
Sbjct: 671 TLKERFAPYPIEIGLLNRFRSASEKKLIQQKLITGEIDIIVGTHSVLSKHIKFRDLGLLV 730

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ RFGV Q+ K+    T   VL +TATPIPRTL +   G  ++S IT  P  R+PIK
Sbjct: 731 VDEEQRFGVNQKEKIKALKTHVDVLTLTATPIPRTLYMALSGIREMSLITTPPPSRRPIK 790

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T + P+N+ + +   +   L  G + +++ P+IE  +E +               ++ +A
Sbjct: 791 THLGPLNQ-ETIRAAICQELDRGGQVFYVVPRIEGIEEKS-------AAIREMVPSARLA 842

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + ES+M +F  G   +L+ TT+IE G+D+   + I++E+A  FGL QL+QL
Sbjct: 843 IAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIPRVNTILVEDAHKFGLGQLYQL 902

Query: 580 RGRVGRGEEISSCILLY------HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
           RGRVGR    +   L Y         L++++  RL  +K       G+ +A  DL+ R  
Sbjct: 903 RGRVGRAGAQAHAWLFYPIKGDGQAALTEDAVKRLRAIKEFTQLGSGYQLAMRDLEIRGA 962

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G+ILG +QSG    +     L+  +L+ A ++ +
Sbjct: 963 GDILGAQQSGQMNAIGFD--LYTEMLQEAIQEVR 994


>gi|224282408|ref|ZP_03645730.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313139552|ref|ZP_07801745.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132062|gb|EFR49679.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171]
          Length = 894

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 215/879 (24%), Positives = 340/879 (38%), Gaps = 217/879 (24%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P    D      + E      +  +  +       +  R
Sbjct: 17  RRVGALKSLGVVTVGDALTYYPFRVADPVPLRALREARIGERMAFSASVRGMRVVPMNVR 76

Query: 88  RPYK--ILLNDGTGEIT---------LLFFY---RKTEMLKNVFFEGRKITVTGKIKKLK 133
           R Y+   +++DG   ++         L+FF    +  + L      G  + + G+  +  
Sbjct: 77  RGYRLEAVVDDGDFAVSRHIAGAAARLVFFSYKKQYVDWLSMRLRSGAIVVIAGEPSEFN 136

Query: 134 NRIIMVHPHYIF------------------------HNSQDVNFPLI---EAVYSLPTGL 166
            ++   HP  +                          ++ +     I     VY   + +
Sbjct: 137 GQLQFTHPEIMTVAPGSGPADGEYSGVVQMSALKYDADTVEAGLRRISRPRPVYHASSRI 196

Query: 167 SVDLFKKIIVEALSRLP------------------------------------------- 183
           S +   + IV+ +  L                                            
Sbjct: 197 SSEHIHESIVQCIELLAGTGQDLPGDAATEAPQTMKPMEDGGISGAGTAPADAESRSGNA 256

Query: 184 -------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
                   +P+ + + + +       AEAF  IH+P    DF+          Y+E    
Sbjct: 257 VAVGLARAIPDVLPESVRESNHLLHRAEAFLAIHDPLNTADFKRAIGTMR---YEEAFVS 313

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q ALL  R   +K+  +P      +  + + ++PF  T  Q   I DI  DM+++  M R
Sbjct: 314 QTALLQSRSNVRKDAALPCAGV-ALRDRFIESLPFPLTGGQREIIDDIGVDMAREYPMQR 372

Query: 297 ILQGDVGSGKTLV---------------------------------ALIAMAAAVEAG-- 321
           +LQG+VGSGKT+V                                 A++    +VE G  
Sbjct: 373 LLQGEVGSGKTVVAVAAMLQAAGSGHQAVLVAPTQVLAEQHHATISAMLCAIDSVETGDD 432

Query: 322 ----------------------------GQAVIMAPI-----GILAQQHYEFIKKYTQNT 348
                                       G+A +  P+         Q      +      
Sbjct: 433 PSRDALSPNDPADLIKAAESAADDGDAKGRAAVKHPVKHSGARSGKQDGAAHAQSDANTR 492

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            + V ++TG M  A RR+AL   A G   II+ THA F  + Q   L LV++DEQHRFGV
Sbjct: 493 HVPVILLTGGMKLAARRRALALAASGDPCIIVATHAAFSKTFQAPNLALVVIDEQHRFGV 552

Query: 409 QQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           +QR  L  +    PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T I+P + 
Sbjct: 553 EQRESLRTKNDVVPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTFIVPEDD 612

Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQIEEKKE--------------------------- 497
              +  +   ++  +  G++AY +CP+I+   E                           
Sbjct: 613 GRMMGSMFAHIRGRIDAGERAYVVCPRIDADDESDGDDDTSGASQIGVYDDSDTYRRESA 672

Query: 498 ---------------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
                                 +   +  R +SL +      A + GR  D  K+ VM  
Sbjct: 673 NTTTSAPSQEDGDGAPSRPPLHSVAEIERRLSSLPQFRGIRFATLTGRDDDATKQQVMAD 732

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G   +L+ATTVIEVG+DV  AS I+I +A+ +GL+QLHQLRGRVGRG   S   L+ 
Sbjct: 733 FADGATPVLVATTVIEVGVDVPQASCIVIFDADRYGLSQLHQLRGRVGRGGTDSWAFLIS 792

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSL 655
                  +  RL V++ T DG  IA+ DL+ R  G++LG  QSG      + +      +
Sbjct: 793 RAEDGGPAQQRLQVIQGTLDGAQIAQADLEFRGAGDVLGDAQSGGKSGLKLLRVVKDAKI 852

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           +  AR+ A  +L  DPDL+    +    +L   + NE F
Sbjct: 853 IADARERAGRLLADDPDLSG-EVELAGAVLDFTRGNETF 890


>gi|108803751|ref|YP_643688.1| transcription-repair coupling factor [Rubrobacter xylanophilus DSM
           9941]
 gi|108764994|gb|ABG03876.1| transcription-repair coupling factor [Rubrobacter xylanophilus DSM
           9941]
          Length = 1054

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 140/422 (33%), Positives = 225/422 (53%), Gaps = 13/422 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  +  +  G     +G+  +++  + P+  T  Q +AI  + +DM +   M R++ G
Sbjct: 487 LRLHAERARAEGFAFPPDGEWERELEESFPYQETPDQAAAIAAVKEDMQRPRPMDRLVCG 546

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VA+ A   A  AG Q +++AP  IL QQHY   ++  +   + VE ++    
Sbjct: 547 DVGFGKTEVAVRAAFKAALAGKQTLMLAPTTILVQQHYRTFRERLERFAVRVESLSRFTT 606

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            A RR+ L  +A G+  I+IGTHAL    ++   L L++VDE+ RFGV+ + ++ Q  T+
Sbjct: 607 AAERRRILRDLASGEVDILIGTHALLGAEVRPKDLGLLVVDEEQRFGVRHKERIKQLKTS 666

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL +TATPIPRT+ +   G  DIS I   PAGR+ + T + P +  + V   ++  ++
Sbjct: 667 VDVLTLTATPIPRTMQMGLSGLRDISVIETPPAGRRSVLTHVGPYDE-ELVRRAIEREVA 725

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  ++E  +E       +R   L      ++A  HG+M +   E VM  F  G
Sbjct: 726 RGGQVFFVHNRVETIEE-----AAQRLRELVPGVRFAVA--HGQMPERALEEVMQRFLEG 778

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+ TT++E G+D+  A+ +I+E A+  GLAQL+QLRGR+GR  E +   L      
Sbjct: 779 EADVLVTTTIVESGLDIATANTLIVERADAMGLAQLYQLRGRIGRSTEQAYAYLFAPLGA 838

Query: 601 SKNSYTRLSVL---KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +  +  RL  L        GF +A  DL+ R  G +LG +QSG         E++  LLE
Sbjct: 839 TLEAQRRLEALLDFTELGSGFAVAMRDLEIRGAGNLLGAEQSGHI--AAVGFEMYLRLLE 896

Query: 658 IA 659
            A
Sbjct: 897 EA 898


>gi|325335423|gb|ADZ11697.1| Transcription-repair coupling factor (superfamily II helicase)
           [Riemerella anatipestifer RA-GD]
          Length = 1097

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 136/482 (28%), Positives = 240/482 (49%), Gaps = 22/482 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +   +  A  + +A  +  L  ++  K   G     +  +  ++  +  +  T  QE 
Sbjct: 507 WKNLKNKTKAKVKQIAFDLIKLYAKR--KTAKGFAYTPDTYLQNELEASFLYEDTPDQEK 564

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+ +DM     M R++ GDVG GKT VA+ A   A   G Q  ++ P  ILA QHY 
Sbjct: 565 ATLDVKRDMEADTIMDRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVLVPTTILAFQHYR 624

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + +  +        +R+ LE++A G+  IIIGTH L  D +++  L L+I
Sbjct: 625 SFAERLKDFPVNISYLNRFRTAKQKRETLEKLAEGKIDIIIGTHQLASDKVKFKDLGLLI 684

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+H+FGV  + KL         L +TATPIPRTL  + +   D+S I   P  R+P++
Sbjct: 685 IDEEHKFGVSVKDKLKTLKANIDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVE 744

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +I  +  + + + +   L    + Y+I  +I+  K  +   +++R         + + 
Sbjct: 745 TQLIGFDE-EIIRDAISYELQRDGQVYFINNRIDNLK--DIAGMIQRL-----VPDARVI 796

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG+M     E  +  F  G   +L++TT++E G+DV +A+ I I +A+ FG+A +HQ+
Sbjct: 797 TGHGQMDGKQLEENILDFMEGRYDVLVSTTIVESGVDVPNANTIFINDAQRFGMADVHQM 856

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    + C L+  P   ++ ++  RL  ++   D   GF IA +DL+ R  G++L
Sbjct: 857 RGRVGRSNRKAFCYLITPPFDMVTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLL 916

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV-RGQSIRILLYLYQYNEA 693
           G +QSG    +    E +  +++ + ++    L  D +  S+   ++ R  L+    +  
Sbjct: 917 GAEQSGFINEM--GFETYQKIMQESLEE----LQNDAEFESLFENEADRKKLFKSSKDVN 970

Query: 694 FQ 695
             
Sbjct: 971 ID 972


>gi|3511015|gb|AAD03810.1| transcription-repair coupling factor [Lactobacillus sakei]
          Length = 1045

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 138/446 (30%), Positives = 226/446 (50%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +  A  E +A  +  L  +++ +   G     + ++         +  T  Q 
Sbjct: 569  EWQKTKSKVSAKIEDIADDLIELYAQREAE--KGYAFPKDDQLQADFENQFAYPETDDQL 626

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV AG Q   + P  ILAQQHY
Sbjct: 627  RSTAEIKHDMEKVRPMDRLLVGDVGFGKTEVALRAAFKAVAAGKQVAFLVPTTILAQQHY 686

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +     +  + + +++    +      L+ +  GQ  I+IGTH L    + +  L L+
Sbjct: 687  ENMLARFADFPVELGLLSRFKTRKEVTATLKGLEKGQVDIVIGTHRLLSKDVVFKDLGLL 746

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 747  IVDEEQRFGVKHKERLKQLKAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPI 806

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L    + +++  ++ + +       V+   +L     +++
Sbjct: 807  QTYVMEQN-AGAMREAIERELERNGQVFYLHNRVSDIE-----QTVDEIQALVPE--ATV 858

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E V+  F  G   +L+ TT+IE G+D+ + + +I+E+A+H+GL+QL+Q
Sbjct: 859  GYAHGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNVNTMIVEDADHYGLSQLYQ 918

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++    +Y P   L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 919  LRGRIGRSSRVAYGYFMYKPDKVLTEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 978

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G    +     L+  +L  A
Sbjct: 979  LGKQQHGFIDSVGFD--LYSQMLSEA 1002


>gi|329117227|ref|ZP_08245944.1| transcription-repair coupling factor [Streptococcus parauberis NCFD
           2020]
 gi|326907632|gb|EGE54546.1| transcription-repair coupling factor [Streptococcus parauberis NCFD
           2020]
          Length = 1167

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 150/452 (33%), Positives = 235/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + + ++      N  F  
Sbjct: 555 KLNDGRFQKTKQKVTKQVEEIADDLLKLYA--ERSQLKGYQFSPDDELQASFEDNFAFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  + K+I +DM   + M R+L GDVG GKT VA+ A   AV    Q  I+ P  +L
Sbjct: 613 TDDQIRSSKEIKRDMESSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAILVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  K+  ++  + V++++    +  +   L+R+A G+  IIIGTH L    + + 
Sbjct: 673 AQQHYENFKERFEDYPVEVDVLSRFRSKKEQTATLDRLAKGRVDIIIGTHRLLSKDVIFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++           ++   L E 
Sbjct: 793 NRYPVQTYVMETN-PGIVREAIIREMDRGGQVFYVYNKVDTID--------KKVAQLQEL 843

Query: 514 FTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + I  +HG+MS+I  E+ +  F +G   +L+ATT+IE G+D+ + + + +ENA+H G
Sbjct: 844 VPEATIGFVHGQMSEIQLENTLIDFISGDYDVLVATTIIETGVDISNVNTLFVENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   LS+ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLSEISEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEDA 993


>gi|295397825|ref|ZP_06807889.1| transcription-repair coupling factor [Aerococcus viridans ATCC 11563]
 gi|294973922|gb|EFG49685.1| transcription-repair coupling factor [Aerococcus viridans ATCC 11563]
          Length = 1233

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 139/454 (30%), Positives = 234/454 (51%), Gaps = 17/454 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    ++  +  E +A ++  L   ++ +   G     +     +     P++ T  Q 
Sbjct: 572  EWAKTKQKVSSKIEDIADELIDLYASREAQ--KGFAFGPDTAEQAEFENAFPYTETDDQV 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I +DM  +  M R+L GDVG GKT VA+ A+  A+  G Q   + P  +LAQQHY
Sbjct: 630  RSIAEIKKDMEVEKPMDRLLVGDVGFGKTEVAMRAVFKALMEGKQVAFLVPTTVLAQQHY 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +   +    + +++    +A + + +  +  GQ  I+IGTH +    +++  L L+
Sbjct: 690  ETFTERFADWPFEIGLLSRFRSKAQQNETIAGLKKGQVDIVIGTHRILSKDVEFLDLGLL 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ + KL        VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 750  VVDEEQRFGVKAKEKLKALKANVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPANRYPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    V + ++  ++   + +++   + + +E          N L     + +
Sbjct: 810  QTFVMEQN-YGAVKDAIEREIARDGQVFYLFNNVAQIEE-----KAAFINELVPE--ARV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            AI HG+M+ +  E+VM  F  G   +L+ TT+IE G+D+ +A+ +++E A+  GL+ L+Q
Sbjct: 862  AIAHGQMTVVQLENVMMDFVLGEFDVLVTTTIIETGVDIPNANTLLVEGADRMGLSTLYQ 921

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+    +Y P   LS+ S  RL  L++      GF IA  DL  R  G +
Sbjct: 922  LRGRVGRSTRIAYAYFMYRPDKMLSEVSEKRLMALRDFTELGSGFKIAMRDLSIRGAGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            LG +Q G    +     L+  +L  A +  + IL
Sbjct: 982  LGKQQHGFVNSVGFD--LYSQMLREAVQRKRGIL 1013


>gi|326333885|ref|ZP_08200118.1| transcription-repair coupling factor [Nocardioidaceae bacterium
            Broad-1]
 gi|325948467|gb|EGD40574.1| transcription-repair coupling factor [Nocardioidaceae bacterium
            Broad-1]
          Length = 1198

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 136/490 (27%), Positives = 230/490 (46%), Gaps = 28/490 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++    PF  T  Q 
Sbjct: 597  DWQKRKARARKAVREIAAELIKLYAARQA--TKGFQYGPDNPWQRELEDAFPFQETADQL 654

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++ QDM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L  QH 
Sbjct: 655  AVIDEVKQDMMRPVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVSQHL 714

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V  ++         + +  +  G   I++GTH L    +++  L L+
Sbjct: 715  STFMERMSGFPVNVRGLSRFQTDKEAAEVMAGLTDGTIDIVVGTHRLLNKDVRFKDLGLI 774

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  + +  T+   L M+ATPIPRTL ++  G  ++S IT  P  R P+
Sbjct: 775  IIDEEQRFGVEHKEAMKRLRTSVDFLSMSATPIPRTLEMSITGIREMSTITTPPEERHPV 834

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +++  ++  L    + ++I  ++   +         R   L     + +
Sbjct: 835  LTYVGAYEDR-QIVAAVRRELLREGQVFYIHNRVNSIE-----KAAARIRELVPE--ARV 886

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++   E VM  F      +L+ TT++E G+DV +A+ +IIE A+  GL+QLHQ
Sbjct: 887  AVAHGQMNEKQLEQVMVDFWEKEFDVLVCTTLVESGLDVSNANTMIIERADTLGLSQLHQ 946

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E +    LY    PL++ ++ RL+ L    D   G  IA +DL+ R  G +
Sbjct: 947  LRGRVGRSRERAYAYFLYPGEKPLTETAHERLATLAQHSDLGGGMAIAMKDLEIRGAGNL 1006

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-------Y 686
            LG +QSG    +     L+  L+  A  + K      PD  +     +RI L       +
Sbjct: 1007 LGGEQSGHIADVGFD--LYVRLVGEAVAEFKAG----PDGAAEELNEVRIELPVDAHLPH 1060

Query: 687  LYQYNEAFQF 696
             Y  +E  + 
Sbjct: 1061 DYIPSERLRL 1070


>gi|315022463|gb|EFT35490.1| transcription-repair coupling factor [Riemerella anatipestifer
           RA-YM]
          Length = 1096

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 136/482 (28%), Positives = 240/482 (49%), Gaps = 22/482 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +   +  A  + +A  +  L  ++  K   G     +  +  ++  +  +  T  QE 
Sbjct: 484 WKNLKNKTKAKVKQIAFDLIKLYAKR--KTAKGFAYTPDTYLQNELEASFLYEDTPDQEK 541

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+ +DM     M R++ GDVG GKT VA+ A   A   G Q  ++ P  ILA QHY 
Sbjct: 542 ATLDVKRDMEADTIMDRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVLVPTTILAFQHYR 601

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + +  +        +R+ LE++A G+  IIIGTH L  D +++  L L+I
Sbjct: 602 SFAERLKDFPVNISYLNRFRTAKQKRETLEKLAEGKIDIIIGTHQLASDKVKFKDLGLLI 661

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+H+FGV  + KL         L +TATPIPRTL  + +   D+S I   P  R+P++
Sbjct: 662 IDEEHKFGVSVKDKLKTLKANIDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVE 721

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +I  +  + + + +   L    + Y+I  +I+  K  +   +++R         + + 
Sbjct: 722 TQLIGFDE-EIIRDAISYELQRDGQVYFINNRIDNLK--DIAGMIQRL-----VPDARVI 773

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG+M     E  +  F  G   +L++TT++E G+DV +A+ I I +A+ FG+A +HQ+
Sbjct: 774 TGHGQMDGKQLEENILDFMEGRYDVLVSTTIVESGVDVPNANTIFINDAQRFGMADVHQM 833

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    + C L+  P   ++ ++  RL  ++   D   GF IA +DL+ R  G++L
Sbjct: 834 RGRVGRSNRKAFCYLITPPFDMVTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLL 893

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV-RGQSIRILLYLYQYNEA 693
           G +QSG    +    E +  +++ + ++    L  D +  S+   ++ R  L+    +  
Sbjct: 894 GAEQSGFINEM--GFETYQKIMQESLEE----LQNDAEFESLFENEADRKKLFKSSKDVN 947

Query: 694 FQ 695
             
Sbjct: 948 ID 949


>gi|88802028|ref|ZP_01117556.1| transcription-repair coupling factor [Polaribacter irgensii 23-P]
 gi|88782686|gb|EAR13863.1| transcription-repair coupling factor [Polaribacter irgensii 23-P]
          Length = 1114

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 139/451 (30%), Positives = 230/451 (50%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++  A  + +A  +  L  +++ +   G     +  I  ++  +  +  T  Q +
Sbjct: 507 WKKIKQKTKARVKHIAFNLIQLYAKRKLE--KGFSFGPDSHIQHELEGSFIYEDTPDQFT 564

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D+ +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  I+ P  ILA QHY+
Sbjct: 565 ATQDVKKDMEKAQPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAILVPTTILAFQHYK 624

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + ++ +        +  A+E + +G   IIIGTH L    I++  L L+I
Sbjct: 625 TFTERLKDFPLKIDYLNRFRTAKEKTAAIEGVNNGSVDIIIGTHQLTNQRIKFKNLGLLI 684

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL         L +TATPIPRTL  + +   D+S I   P  R PI 
Sbjct: 685 IDEEQKFGVAVKDKLKTLKENIDTLTLTATPIPRTLQFSLMAARDLSIIKTAPPNRHPID 744

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +I  +  + + + +   +S G + ++I  +IE  KE            L    ++ I 
Sbjct: 745 TNVIRFSE-ETIRDAISYEISRGGQIFFIHNRIENIKEVAG-----LLQRLVP--SAKIG 796

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E +M SF N    +L++TT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 797 IGHGQMEGKKLEGLMLSFMNNEFDVLVSTTIIESGLDVPNANTIFINNANNFGLSDLHQM 856

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   ++ ++  R+  L    D   G  IA +DL+ R  G++L
Sbjct: 857 RGRVGRSNKKAFCYFITPPYHVMTDDARKRIEALVLFSDLGSGINIAMKDLEIRGAGDLL 916

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG    +      +  +L+ A ++ K 
Sbjct: 917 GGEQSGFINDIGFD--TYQKILQEAIEELKE 945


>gi|168335026|ref|ZP_02693140.1| transcription-repair coupling factor [Epulopiscium sp. 'N.t.
            morphotype B']
          Length = 1175

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 165/577 (28%), Positives = 288/577 (49%), Gaps = 40/577 (6%)

Query: 97   GTGEITLLFFYRKTEML----KNVFFEGRKITVTGKIKKLK--NRIIMVHPHYIFHNSQD 150
             +G ++  F Y   E +    + +F + RK++   K K  K  + + +    Y+ H +  
Sbjct: 459  ASGSLSHGFIYEDLEFVILSDRELFGKDRKVSTKKKYKGAKIESFMELAEGDYVVHENHG 518

Query: 151  VNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK-SFPSIAEAFNI 208
            +   + IE +  +  G++ D   KI  E  +    + +    DL+QK       A   N+
Sbjct: 519  IGIFIGIEKI--VTEGVARDNL-KINYEGGTLYVNINQ---MDLVQKYVGSEGAAPKLNM 572

Query: 209  IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
            + NP      EW     +     + +A ++ LL  +++     G     +     +   +
Sbjct: 573  LGNP------EWKKAKSKARNSVKNIAKELILLYSKREN--SRGFAYEKDSIWQTEFEES 624

Query: 269  IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             P+  T  Q  AI+ +  DM     M R++ GDVG GKT VA+ A   A+    Q   + 
Sbjct: 625  FPYEETSDQIDAIQAVKTDMESDKIMDRLILGDVGYGKTEVAIRAAFKAILNHKQVAYLV 684

Query: 329  PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            P  +LAQQH+E   K  ++  I V +++        ++ L+ I  G   I+IGTH L   
Sbjct: 685  PTTVLAQQHFERFLKRMESQAISVGVLSRFRTPKQIKETLKGIESGMIDIVIGTHRLLSK 744

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             + +  L L+I+DE+ RFGV  + KL Q  T    L +TATPIPRTL ++ +G  D+S I
Sbjct: 745  DVLFKDLGLLIIDEEQRFGVAHKEKLKQMRTEVDALTLTATPIPRTLQMSLIGIRDMSVI 804

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             E P+ R+ ++T ++  +  D + + +   ++   + Y++  +++        ++VE+  
Sbjct: 805  EEAPSERRAVQTYVLEESD-DFIKDAINREINREGQVYFLSXRVQ--------NIVEKAA 855

Query: 509  SLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L      + +A+ HG+MS  + E++M+ F+N    +L+ TT+IE G+D+ +A+ III +
Sbjct: 856  QLSNMVPXAKVALAHGQMSVRELEAIMERFENKEINVLVCTTIIETGLDIANANTIIIVD 915

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
            A+  GL+QL+QLRGRVGR ++ +   LLY     LS+ +  RL+ +K       GF IA 
Sbjct: 916  ADKMGLSQLYQLRGRVGRSDKQAYAYLLYKRDXILSEVAEKRLNAIKQFTQLGAGFKIAM 975

Query: 623  EDLKQRKEGEILGIKQSGMP---KFLIAQPELHDSLL 656
             DL+ R  G++LG  QSG      + +    L +++L
Sbjct: 976  RDLEIRGAGDLLGASQSGHMAKIGYELYSKMLREAIL 1012


>gi|295093547|emb|CBK82638.1| transcription-repair coupling factor [Coprococcus sp. ART55/1]
          Length = 1188

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 135/451 (29%), Positives = 230/451 (50%), Gaps = 17/451 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +   +   +A  +  L   +Q ++      + + +  ++     P++ T  Q 
Sbjct: 580  EWQKVRNKVKGHVSEVAQHLVKLYSERQAREG--FAYSPDSEWQKEFEETFPYTETDDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+D+  DM     M R++ GDVG GKT VA+ A   AV    Q   + P  ILA+QHY
Sbjct: 638  KAIEDVKADMESHKIMDRLVCGDVGFGKTEVAIRAAFKAVGDSKQVAYLVPTTILAEQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  ++  + V ++     Q   +  L  +  G+  I+IGTH L    +++  L L+
Sbjct: 698  ETFTERMKDYPVTVRLLCRFCTQKEIKSTLRELKEGKVDIVIGTHRLLSKDVEFKNLGLL 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ +  T   VL +TATPIPRTL ++ +G  D+S + E P  R+PI
Sbjct: 758  IIDEEQRFGVNHKEKIKEMKTNVDVLTLTATPIPRTLHMSLVGIRDMSLLEEPPVDRRPI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  +R +   E +   L+   + Y++  ++E           +   SL  +  +++
Sbjct: 818  QTYVMEYDR-ELAREAIARELARHGQVYYVYNRVE-----GIERFADDVRSLVPY--ANV 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M     E +M  F      +L+ TT+IE G+D+ +A+ III +A  FGLAQL+Q
Sbjct: 870  EFAHGQMDGRTLEDIMYRFNKKEIDVLVCTTIIETGLDIPNANTIIIHDANLFGLAQLYQ 929

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR +  +   + Y  +  +S+ +  RL  +K   D   G  +++ DL  R  G +
Sbjct: 930  LRGRVGRSDRSAFAFMFYRRNKMISEVAEKRLRAIKEYTDLGSGVKVSKADLNIRGAGSV 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            LG  QSG   + +   +L+  +L  A ++ +
Sbjct: 990  LGESQSG--NYEVVGYDLYCKMLNDAVRELR 1018


>gi|306835701|ref|ZP_07468707.1| transcription-repair coupling factor [Corynebacterium accolens ATCC
            49726]
 gi|304568419|gb|EFM43978.1| transcription-repair coupling factor [Corynebacterium accolens ATCC
            49726]
          Length = 1213

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 138/474 (29%), Positives = 237/474 (50%), Gaps = 20/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q           +     ++  N PF  T+ Q 
Sbjct: 588  DWKNTKKKARAAVREIAGELVDLYAKRQAAPGHQFA--PDNPWQAEMEDNFPFVETEDQM 645

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  + +DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHY
Sbjct: 646  LAIDAVKEDMESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGTQVAVLVPTTLLAQQHY 705

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + + +++    +    +  + +A G   I++GTH L Q  + +  L L+
Sbjct: 706  DTFSERMAGFPVKMAVLSRFTSKKEATEIFKGLADGSIDIVVGTHRLLQTGVHWKNLGLI 765

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +     +  VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 766  VVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 825

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T +       +V   ++  L    + ++I  ++ + +        ++   L +    + 
Sbjct: 826  LTYVGAYED-KQVAAAIRRELLRDGQTFFIHNKVSDIE--------KKARELRDLVPEAR 876

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I + HG+M++   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLH
Sbjct: 877  IVVAHGQMNEDVLEKTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLH 936

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G 
Sbjct: 937  QLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGN 996

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD-PDLTSVRGQSIRILL 685
            +LG +QSG         +L+  L+  A +  K +   + P +T    + IRI L
Sbjct: 997  VLGAQQSGHI--AGVGFDLYVRLVGEAVEAFKSLARGETPAVTDEGPKEIRIDL 1048


>gi|162450905|ref|YP_001613272.1| transcription-repair coupling factor [Sorangium cellulosum 'So ce
            56']
 gi|161161487|emb|CAN92792.1| transcription-repair coupling factor [Sorangium cellulosum 'So ce
            56']
          Length = 1271

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 140/456 (30%), Positives = 224/456 (49%), Gaps = 19/456 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D        +  A  E    ++A  L+R   + +     P+       +      PF  T
Sbjct: 665  DRLGGQTFAKTKARVEKSVRKMADELLRLYAERRAATAEPVPPPDDDYRAFEATFPFDET 724

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q  AI ++  D+     M R++ GDVG GKT VA+ A   A  AG Q  ++ P  +LA
Sbjct: 725  PDQARAITEVTADLESGRPMDRLVCGDVGFGKTEVAIRAAFRAANAGRQVAVLCPTTVLA 784

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            QQHY   +    +  I V +++    +  + +    +  G   ++IGTH L    + + +
Sbjct: 785  QQHYLSFRSRMASYPIEVRVMSRFQSKQEQDEVSRGLRDGSVDVVIGTHRLLSKDVHFKR 844

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L++VDE+ RFGV  + ++    T   VL ++ATPIPRTL +   G  D+S IT  P  
Sbjct: 845  LGLLVVDEEQRFGVTHKERIKALKTNVDVLTLSATPIPRTLQMAVSGLRDMSIITTPPVD 904

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R+ I+TV+   +    + E +   L  G + +++  ++E         + ER   L E  
Sbjct: 905  RRAIRTVVTRHDE-AVLREAVLRELGRGGQVFYVYNRVE--------GLYERAARLAELV 955

Query: 515  T-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              + I + HG+MS+   E  M  F  G   +L AT +IE G+D+  A+ I+I+ A+ FGL
Sbjct: 956  PSARICVAHGQMSEQSLEQAMLDFVEGRYDVLCATAIIESGLDIPRANTILIDRADMFGL 1015

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQR 628
            +QL+QLRGRVGR +E + C L+  PP  ++  +  R+  L+       GF IA  DL+ R
Sbjct: 1016 SQLYQLRGRVGRSKERAYCYLIVPPPNAMTDEARARIEALERHTELGSGFQIASLDLELR 1075

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
              G++LG +QSG         EL   +L+ A  + +
Sbjct: 1076 GSGDLLGAEQSGT--VAQVGFELFCQMLDEAVHELR 1109


>gi|320530140|ref|ZP_08031210.1| transcription-repair coupling factor [Selenomonas artemidis F0399]
 gi|320137573|gb|EFW29485.1| transcription-repair coupling factor [Selenomonas artemidis F0399]
          Length = 1094

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 160/581 (27%), Positives = 266/581 (45%), Gaps = 44/581 (7%)

Query: 106 FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL-PT 164
           F R    L+     G +I         ++   +    Y+ H S          V +L   
Sbjct: 405 FGRHKAKLRRSAGAGERI---------RHFREIAPGDYVVHVSH--GIGKYLGVETLEVA 453

Query: 165 GLSVDLFKKIIVEALSRLPVLPEWIEKD---LLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
           G+  D         +        ++  D   LLQK        A        +    +W 
Sbjct: 454 GVHRDYLH------IQYGGDDKLFVPTDQVGLLQKY-----IGAEGAAPRLHRMGTADWA 502

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
               +     E +A  +  +  +++     G     +  + ++     P+  T+ Q  AI
Sbjct: 503 RARAKAQKSVEDIADHLLEIYAKRKLA--AGHAFTPDDAMQREFEEAFPYEETEDQLRAI 560

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           ++I +DM  +  M R+L GDVG GKT VA+ A   A   G Q  ++ P  +LAQQHY+  
Sbjct: 561 EEIKRDMESERPMDRLLCGDVGFGKTEVAVRAAFKAAMDGFQVAVLVPTTVLAQQHYQTF 620

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-IQYYKLILVIV 400
                +    V+++        + + L  +  G+  I+IGTHA+   + + + KL L+IV
Sbjct: 621 AARFADFAPKVDVVCRFRTPREQAETLREVEEGRVDILIGTHAILNRTRVHFRKLGLLIV 680

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+ RFGV Q+ ++ + A    VL ++ATPIPRTL ++  G  D+S I   PA R P+++
Sbjct: 681 DEEQRFGVTQKERIKEFAAGVDVLTLSATPIPRTLHMSLAGARDMSIIETPPADRLPVQS 740

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            ++  +    +   ++  LS   + Y+I  ++E            R + L     + IA 
Sbjct: 741 YVVESSD-AMMRGAIERELSRKGQVYFIYNRVESIDRM-------REHLLRLVPEARIAT 792

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG+M++   E VM  F  G   +L+AT++IE GIDV +A+ +II +A+ FGL+QL+Q+R
Sbjct: 793 AHGQMNEDILEQVMMDFYEGHYDILLATSIIENGIDVANANTVIIYDADRFGLSQLYQMR 852

Query: 581 GRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILG 635
           GRVGR  +++     Y     LS+ +  RL  +K       GF IA  DL+ R  G +LG
Sbjct: 853 GRVGRSAKMAFAYFTYRRDKVLSETAEKRLQAMKEFAQLGSGFKIAMRDLEIRGAGSLLG 912

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            +Q G         E++  LLE A    + +  + P++  V
Sbjct: 913 AQQHGHI--AGVGFEMYVKLLEEAVAKRRGVAKESPEVEPV 951


>gi|269798420|ref|YP_003312320.1| transcription-repair coupling factor [Veillonella parvula DSM 2008]
 gi|269095049|gb|ACZ25040.1| transcription-repair coupling factor [Veillonella parvula DSM 2008]
          Length = 1098

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 156/641 (24%), Positives = 290/641 (45%), Gaps = 60/641 (9%)

Query: 57  YRPKISEISEERIVTITGYISQHSSFQLQKRRPYKIL---LNDG----TGEITLLF---- 105
            R  I    E   +     +  HS   + K     IL   L DG       + ++     
Sbjct: 347 RREGIERALEGEHI-----VFTHSDTWIAKPNTVIILNGLLTDGFELPNSHLVVVVEGNI 401

Query: 106 FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN----SQDVNFPLIEAVYS 161
           + ++   L+N   +G++I              +    Y+ H+     + +    IE    
Sbjct: 402 YGQQKRKLRNKPKKGQEI---------NYFTDLTPGDYVVHSMHGIGKYIGLKTIE---- 448

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
              G+     +  I  A +    L  ++  + L +       E    +    K    +W 
Sbjct: 449 -TEGIH----RDYIEIAYAGTDKL--FLPANNLDQLQKYIGNE--GDVPRIHKMGGRDWA 499

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
               +     + LA ++  +    Q +   G     +    Q+     P+  T+ Q  A 
Sbjct: 500 KVVTKAKKSIDDLADKLVEIYA--QREITEGFAFLPDQPWQQEFEDAFPYEETEDQLQAT 557

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +I + M +   M R+L GDVG GKT VA+ A+  AV +G Q  ++ P  +LAQQH++  
Sbjct: 558 AEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLVPTTVLAQQHFQTF 617

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
                   + V+++      + +++ L+ +  G   I+IGTH+L    + +  L +++VD
Sbjct: 618 LNRFAPFGVKVDVLNRFRTTSEKKQILKGVEDGSIDILIGTHSLLNKKVVFKDLGMLVVD 677

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+ RFGV Q+ K  + A+   VL ++ATPIPRTL ++ +G  ++S I   P  R P++T 
Sbjct: 678 EEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGVREMSVINTPPEERLPVQTY 737

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           ++  + ++ + + +K  L+ G + Y++  ++          + E   S       ++A  
Sbjct: 738 VVEYD-MNLIADAIKRELARGGQVYFVYNRVASIN-----HMGELLESALPGLRYAVA-- 789

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M+    E +M  F  G   +L++T++IE G+D+ +A+ III +A+  GL+QL+Q+RG
Sbjct: 790 HGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQLYQMRG 849

Query: 582 RVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636
           RVGR    +    +Y P   LS+ +  RL  ++   +   GF +A  DL+ R  G +LG 
Sbjct: 850 RVGRSRRRAYAYFMYRPDKILSEAAEKRLKAIEEFTELGAGFKLAMRDLEIRGAGNLLGS 909

Query: 637 KQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           +Q G      F +    L +++ +   K+ +  ++ DP + 
Sbjct: 910 QQHGNIASVGFGMYVSMLEEAIAKAQNKEVERDVSIDPAID 950


>gi|254412667|ref|ZP_05026440.1| transcription-repair coupling factor [Microcoleus chthonoplastes PCC
            7420]
 gi|196180402|gb|EDX75393.1| transcription-repair coupling factor [Microcoleus chthonoplastes PCC
            7420]
          Length = 1192

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 148/487 (30%), Positives = 245/487 (50%), Gaps = 21/487 (4%)

Query: 222  SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            +  R R    +L    + L   R Q     G     +     ++  + P+ PT  Q  A+
Sbjct: 599  TKNRVRKTIKKLAVDLLKLYAQRSQR---SGYAFPEDSSWQDELEESFPYQPTPDQLKAV 655

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +D+ +D+     M R++ GDVG GKT VAL A+   + +G Q   +AP  IL QQHY  +
Sbjct: 656  QDVKRDLESDRPMDRLVCGDVGFGKTEVALRAIFKVITSGKQVAFLAPTTILTQQHYHTL 715

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            K+      I V ++        R++   R++ G+  +++GTH +   ++++  L +++VD
Sbjct: 716  KERFAPYPIHVGLLNRFRTAQERKEIQRRLSTGELDVVVGTHQVLGKTVKFRDLGMLVVD 775

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+ RFGV Q+ K+    T   VL +TATPIPRTL ++  G  ++S IT  P  R+ IKT 
Sbjct: 776  EEQRFGVNQKEKIKTLKTQVDVLTLTATPIPRTLYMSLSGVREMSLITTPPPSRRSIKTH 835

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAI 520
            + P N  + V   ++  L  G + +++ P++E  +        E    L E    + +AI
Sbjct: 836  LAPYN-PEAVRTAIRTELDRGGQVFYVVPRVEGIE--------EVATKLREMIPSARLAI 886

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+M + + E+ M +F +G   +LI TT+IE G+D+   + I+IE+A+ FGLAQL+QLR
Sbjct: 887  AHGQMPEGELEATMLTFSSGEADILICTTIIESGLDIPRVNTILIEDAQRFGLAQLYQLR 946

Query: 581  GRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
            GRVGR    +   L Y     LS  +  RL  ++       G+ +A  D++ R  G +LG
Sbjct: 947  GRVGRSGVQAHAWLFYPKQDTLSDAARKRLRAIQEFTQLGSGYQLATRDMEIRGVGNLLG 1006

Query: 636  IKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
             +QSG      F +    L +++ EI  ++   +     DL          +  L Q   
Sbjct: 1007 AEQSGQMDVIGFDLYMEMLQEAIREIQGQEIPQVDDTQIDLNLTAFIPADYIPDLDQKMS 1066

Query: 693  AFQFIRA 699
            A++ + A
Sbjct: 1067 AYRTVAA 1073


>gi|313888106|ref|ZP_07821780.1| transcription-repair coupling factor [Peptoniphilus harei
            ACS-146-V-Sch2b]
 gi|312845796|gb|EFR33183.1| transcription-repair coupling factor [Peptoniphilus harei
            ACS-146-V-Sch2b]
          Length = 1159

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 135/465 (29%), Positives = 228/465 (49%), Gaps = 20/465 (4%)

Query: 210  HNPRK---AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
            + P K       +W           + +A  +  L   ++     G   + + +  ++  
Sbjct: 552  NRPPKVNKLNSLDWKKKKARARQSIDDMAEDLIKLYATREN--TKGFAFSEDSQYQREFE 609

Query: 267  RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
                +  T  Q  + ++I +DM + + M R+L  DVG GKT VAL A   A+  G Q  I
Sbjct: 610  DAFIYEETPGQLKSAEEIKEDMEKASPMDRLLCADVGYGKTEVALRAAFKAILDGKQVAI 669

Query: 327  MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            + P  ILAQQHY  IK+  +N  + V +++    +  ++  LE +  G   II+GTH L 
Sbjct: 670  LVPTTILAQQHYNTIKERFKNFPVGVGLLSRFRSKKDQKMDLEGLKDGNIDIIVGTHRLL 729

Query: 387  QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
               +++  L L+I+DE+ RFGV+ + KL         L +TATPIPRTL ++ +G  D+S
Sbjct: 730  SKDVKFKDLGLLIIDEEQRFGVRHKEKLRMLKENVDTLTLTATPIPRTLQMSMIGIRDMS 789

Query: 447  KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
             I E P  R P++T ++  N +  V E +   +  G + Y++  ++   +        + 
Sbjct: 790  VIEEPPEERFPVETYVLEYNNL-MVREAILKEIERGGQVYFLYNKVSNME-------NKL 841

Query: 507  FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
                     ++ ++ +G+M++   E  M  F  G   +L+ +T+IE G+DV +A+ +II 
Sbjct: 842  LELRKLVPEATFSMANGQMTEKALEDTMIDFIEGNVDVLVCSTIIETGMDVPNANTMIIT 901

Query: 567  NAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIA 621
            ++   GL+QL+QLRGR+GR   I+     Y     +S+ +  RL  +K       G  IA
Sbjct: 902  DSNRLGLSQLYQLRGRIGRSSRIAYAYFTYDRSTSISEVAQKRLQAIKEFTEFGSGHKIA 961

Query: 622  EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            E DL+ R  G ILG +QSG  + +     L+   L+ A    K +
Sbjct: 962  ERDLEIRGSGSILGSRQSGHIEKIGYD--LYMKYLKDAVMKLKGL 1004


>gi|282900454|ref|ZP_06308403.1| Transcription-repair coupling factor [Cylindrospermopsis raciborskii
            CS-505]
 gi|281194647|gb|EFA69595.1| Transcription-repair coupling factor [Cylindrospermopsis raciborskii
            CS-505]
          Length = 1171

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 143/430 (33%), Positives = 228/430 (53%), Gaps = 17/430 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +     ++ G     +    +++  + P+ PT  Q  A++D+ +DM     M R++ G
Sbjct: 599  LQLYAARSQQEGFSYPQDMPWQEEMEDSFPYQPTTDQLKAVQDVKRDMESPRPMDRLVCG 658

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VA+ A+  AV AG Q  ++AP  IL QQHY  IK+      I V ++     
Sbjct: 659  DVGFGKTEVAIRAIFKAVTAGKQVALLAPTTILTQQHYHTIKERFAPYPIHVGLLNRFRS 718

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               +R   +R+  G+  I++GTH L    +Q+  L L+++DE+ RFGV Q+ K+    T 
Sbjct: 719  HEEKRNIQKRLLTGELDIVVGTHQLLGKGVQFKDLGLLVIDEEQRFGVNQKEKIKTLKTH 778

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL ++ATPIPRTL ++  G  ++S IT  P  R+PI+T + P+N    V   ++  L 
Sbjct: 779  LDVLTLSATPIPRTLYMSLSGIREMSLITTPPPTRRPIQTHLAPLN-PQIVSSAIRQELD 837

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
             G + +++ P++E  +E+  R        L E   S    I HG+M +   ES M +F N
Sbjct: 838  RGGQVFYVVPRVEGIEETTTR--------LREMIPSGRFVIAHGQMDESQLESTMLTFSN 889

Query: 540  GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
                +L+ TT+IE G+D+   + I+IE+A  FGL+QL+QLRGRVGR    +   L Y   
Sbjct: 890  HEADILVCTTIIESGLDIPRVNTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQ 949

Query: 599  -PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
              LS  +  RL  ++       G+ +A  D++ R  G +LG +QSG    +     L+  
Sbjct: 950  RELSDAARQRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFD--LYME 1007

Query: 655  LLEIARKDAK 664
            +LE A ++ +
Sbjct: 1008 MLEEAIREIR 1017


>gi|260577719|ref|ZP_05845654.1| transcription-repair coupling factor [Corynebacterium jeikeium ATCC
            43734]
 gi|258604114|gb|EEW17356.1| transcription-repair coupling factor [Corynebacterium jeikeium ATCC
            43734]
          Length = 1243

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 143/474 (30%), Positives = 238/474 (50%), Gaps = 20/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +AG++  L   +Q     G     +    +++    PF+ T+ Q 
Sbjct: 618  DWKNTKRKARGAVREIAGELVQLYASRQAA--PGYAFAADTPWQREMEDAFPFTETEDQY 675

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ +  DM +   M R++ GDVG GKT VA+ A   AV++G Q  ++ P  +LAQQHY
Sbjct: 676  NAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQHY 735

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  Q+    ++ ++     A  +K +  +A G   I+IGTH L Q  + +  L L+
Sbjct: 736  NTFSERMQDFPTTIKELSRFTTPAESKKVIAGMADGTVDIVIGTHRLLQTGVHWKNLGLI 795

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 796  IVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 855

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T +        V   ++  L    + +++  ++        RS+ +    +      + 
Sbjct: 856  LTYVGAQED-KHVAAAIRRELLRDGQVFYVHNKV--------RSIEQTAADIRRLVPEAR 906

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + + HG+MS+   E+ +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLH
Sbjct: 907  VVVAHGQMSEEQLETTVKGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLH 966

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G 
Sbjct: 967  QLRGRVGRSRERGYAYFLYPKGEVLTETSYDRLTTIAQNNDLGAGMAVAMKDLEMRGAGN 1026

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP-DLTSVRGQSIRILL 685
            +LG +QSG         +L+  L+  A +  + +    P D      + IRI L
Sbjct: 1027 VLGAEQSGHI--AGVGFDLYVRLVGEAVEAFRAMADGKPVDGREEEKKEIRIDL 1078


>gi|160914796|ref|ZP_02077010.1| hypothetical protein EUBDOL_00803 [Eubacterium dolichum DSM 3991]
 gi|158433336|gb|EDP11625.1| hypothetical protein EUBDOL_00803 [Eubacterium dolichum DSM 3991]
          Length = 1143

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 146/462 (31%), Positives = 242/462 (52%), Gaps = 22/462 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+       LA ++  L      ++ IG   + + ++ ++  ++  +  T  Q 
Sbjct: 550  EWEKTKRKVSEKIAQLAQRLVHLYA--SREEHIGFAFSKDSELQKQFEQDFDYELTHDQA 607

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             A+K+I QDM     M R+L GDVG GKT VA  A   AV    Q   + P  IL+ QHY
Sbjct: 608  RAVKEIKQDMESSKPMDRLLCGDVGFGKTEVAARAAFKAVVDNKQVAFLCPTTILSLQHY 667

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +  +N  + +E+I   +P A +++ +E I  G   I+IGTH L    IQ+  L L+
Sbjct: 668  KTFTRRFENYPVRIEVINRFIPMAKQKQIMEDIKAGSIDILIGTHRLLSKDIQFQDLGLL 727

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + K+ +      VL ++ATPIPRTL ++ +G   +S++   P  R P+
Sbjct: 728  VIDEEQRFGVEHKEKIKEFKNTVDVLSLSATPIPRTLQMSLIGIRSLSQLNTPPQNRMPV 787

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T +I  N    + E ++  L+   + +++   ++E               L E      
Sbjct: 788  QTYVIEKN-FAMIKEIIQRELARNGQVFYLYNNVKEI--------YNVARKLREALPDVE 838

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I + HG+MS  D E VM  F     ++L+ TT+IE GID+ +A+ I+I+ A+HFGLAQL+
Sbjct: 839  IGVAHGQMSREDIEDVMLQFTENHYQVLVCTTIIETGIDIPNANTILIDEADHFGLAQLY 898

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            Q++GRVGR + ++   L+Y P   LS+ +  RL  +K       G+ IA  DL  R  G+
Sbjct: 899  QIKGRVGRSDRLAYAYLMYSPQRQLSEIAMKRLKSIKEFTQLGSGYKIAMRDLTIRGAGD 958

Query: 633  ILGIKQSGMPKFLIAQP---ELHDSLLEIA--RKDAKHILTQ 669
            +LG +Q+G    +        L+D+++E    +K+ K  L +
Sbjct: 959  MLGPQQAGFIDTVGIDMYIEMLNDAIMEEKGIKKEVKKELAK 1000


>gi|182414804|ref|YP_001819870.1| transcription-repair coupling factor [Opitutus terrae PB90-1]
 gi|177842018|gb|ACB76270.1| transcription-repair coupling factor [Opitutus terrae PB90-1]
          Length = 1205

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 153/469 (32%), Positives = 234/469 (49%), Gaps = 18/469 (3%)

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM-RKQFKKEIG 252
           LQ+    S     +      +          + RLA +       A LL  +   + + G
Sbjct: 537 LQESHLISRYVGLSKTK--PQLGRIGSGRWEKARLAAERATIDLAAELLRIQAAREAQPG 594

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
                +    ++   + PF+ T+ Q  AI++   DM +   M R++ GDVG GKT VA+ 
Sbjct: 595 FAFPPDTTWQKEFEASFPFTETRDQLRAIEETKTDMERTQPMDRLICGDVGFGKTEVAIR 654

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           A   AV+ G Q  ++ P  +LAQQH    ++      I +E+++    +A ++K L   A
Sbjct: 655 AAFKAVQGGRQVAMLVPTTVLAQQHLNTFRERMAGYPIAIEMVSRFRSRADQKKILTATA 714

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            GQ  I+IGTH + Q  +++  L LVI+DE+ RFGV+ +    Q  +   VL M+ATPIP
Sbjct: 715 AGQVDILIGTHRVLQHDVKFRDLGLVIIDEEQRFGVKHKEVFKQMRSTVDVLSMSATPIP 774

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL L   G  D+S I   P  R PI+TV+   +    VI+ ++  L  G + +++  +I
Sbjct: 775 RTLYLALTGARDLSVIETAPTNRHPIQTVVKTYDE-KLVIDAVRHELRRGGQVFYLHNRI 833

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E         V  R   L      +I + HG+M   D E VM  F  G  +LL+ TT+IE
Sbjct: 834 ETIN-----LVAARLRELMPDV--TIGVGHGQMEAADLEEVMTEFVAGRYQLLVCTTIIE 886

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN--SYTRLSV 610
            G+D+ + + I+IE A+ FGL+QL+QLRGRVGR +  +   LL H        +  RL+ 
Sbjct: 887 SGLDIPNCNTILIEGADRFGLSQLYQLRGRVGRFKHQAYAYLLLHRHTRLLDVARQRLTA 946

Query: 611 LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           ++       GF IA  DL+ R  G +LG +QSG    +    EL+  LL
Sbjct: 947 MRQHTQLGAGFRIAMRDLELRGAGNLLGAQQSGHI--VGVGFELYCQLL 993


>gi|229917410|ref|YP_002886056.1| transcription-repair coupling factor [Exiguobacterium sp. AT1b]
 gi|229468839|gb|ACQ70611.1| transcription-repair coupling factor [Exiguobacterium sp. AT1b]
          Length = 1175

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 140/449 (31%), Positives = 233/449 (51%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     + +A ++  L   ++    +G     + +   +   + P++ T+ Q 
Sbjct: 568  EWKKVKSKVAKSVKDIADELIKLYAAREA--SVGFAFPPDDEEMGQFESSFPYAETEDQV 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I +I  DM +   M R+L GDVG GKT VA+ A   AV AG Q   + P  +LAQQHY
Sbjct: 626  RSIAEIKADMERSRPMDRLLCGDVGYGKTEVAIRAAFKAVLAGKQVAFLVPTTVLAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +      I V +++    ++      + +  G   I++GTH +    + +  L LV
Sbjct: 686  ETMLERFSEFPINVSVMSRFRSKSEMTATKKGLKEGTIDIVVGTHRVLSKDVTFANLGLV 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L Q  T   VL +TATPIPRTL ++ +G  D+S +   P  R P+
Sbjct: 746  IIDEEQRFGVKHKERLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVLETPPENRYPV 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  + I  + E L+  L+ G +A+++  ++E           E   +L     + I
Sbjct: 806  QTYVMEYDGI-VLREALERELARGGQAFFLYNRVE-----GIERKAEEIRALLPD--ARI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HGRM++ + ES + SF  G   +L++TT+IE GID+ + + +I+ +A+  GL+QL+Q
Sbjct: 858  ATAHGRMTESELESQLISFLEGEADILVSTTIIETGIDIPNVNTLIVHDADKMGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+     Y     L++ + +RL  +K       GF IA  DL  R  G +
Sbjct: 918  LRGRVGRSNRIAYAYFTYRKDKRLTEVAESRLQAIKEFTELGSGFKIAMRDLSIRGAGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +QSG    +     L+  +L  A ++
Sbjct: 978  LGAQQSGFIDSVGFD--LYSQMLSEAIEE 1004


>gi|303230285|ref|ZP_07317052.1| transcription-repair coupling factor [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515068|gb|EFL57043.1| transcription-repair coupling factor [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 1096

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 147/581 (25%), Positives = 274/581 (47%), Gaps = 44/581 (7%)

Query: 106 FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN----SQDVNFPLIEAVYS 161
           + ++   L+N   +G++I              +    Y+ H+     + V    IE    
Sbjct: 402 YGQQKRKLRNKPKKGQEI---------NYFTDLSVGDYVVHSMHGIGKYVGLKTIE---- 448

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
              G+     +  I  A +    L  ++    L +       E    +    K    +W 
Sbjct: 449 -TEGIH----RDYIEIAYAGTDRL--YLPASNLDQLQKYIGNE--GDVPRIHKMGGSDWR 499

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
               +     + LA ++  L  +++     G     +    Q+   + P+  T+ Q  A 
Sbjct: 500 KAVTKAQKSIDDLADKLVELYAKRE--ITEGFAFLPDQPWQQEFEDDFPYEETEDQLQAT 557

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           ++I + M +   M R+L GDVG GKT VA+ A+  AV +G Q  ++ P  +LAQQHY+  
Sbjct: 558 REIKESMERPTPMDRLLAGDVGFGKTEVAMRAIFKAVVSGKQVAVLVPTTVLAQQHYQTF 617

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
                   + V+++      A +++ L+ + +G   I+IGTH+L    +++  L  ++VD
Sbjct: 618 LNRFNPFGVKVDVLNRFRSTAEKKEVLKGVENGSIDILIGTHSLLNKKVKFKDLGFLVVD 677

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+ RFGV Q+ K  + A+   VL ++ATPIPRTL ++ +G  ++S I+  P  R P++T 
Sbjct: 678 EEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGVREMSVISTPPEDRLPVQTY 737

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           ++  + ++ + + +K  L+ G + Y++  ++          + E           ++A  
Sbjct: 738 VVEYD-MNLIADAIKRELARGGQVYFVYNRVASIN-----HMGELLEQALPDLRYAVA-- 789

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M+    E +M  F  G   +L++T++IE G+D+ +A+ III +A+  GL+QL+Q+RG
Sbjct: 790 HGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQLYQMRG 849

Query: 582 RVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636
           RVGR    +    +Y P   LS+ +  RL  ++   +   GF +A  DL+ R  G +LG 
Sbjct: 850 RVGRSRRRAYAYFMYRPDKMLSEAAEKRLKAIEEFTELGAGFKLAMRDLEIRGAGNLLGS 909

Query: 637 KQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           +Q G      F +    L +++ +   K+    +  DP + 
Sbjct: 910 QQHGNIASVGFGMYVSMLEEAIAKAQNKEVIKEVVPDPAID 950


>gi|225012067|ref|ZP_03702504.1| transcription-repair coupling factor [Flavobacteria bacterium
           MS024-2A]
 gi|225003622|gb|EEG41595.1| transcription-repair coupling factor [Flavobacteria bacterium
           MS024-2A]
          Length = 1064

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 141/489 (28%), Positives = 242/489 (49%), Gaps = 21/489 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++  A  + +A  +  L  +++ K  IG   + +  +  ++  +  +  T  QE 
Sbjct: 447 WKALKQKTKAKIKEIAFNLIELYAKRRQK--IGFAFDPDSYLQWELEASFMYEDTPDQEK 504

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             + I  DM  +  M R++ GDVG GKT VA+ A   A +   Q V++ P  ILA QH++
Sbjct: 505 TTQAIKADMESQQPMDRLVCGDVGFGKTEVAIRAAFKAADNSKQVVVLVPTTILAFQHFK 564

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                 +   + V+ +        + + L+ ++ G+  I+IGTH L   ++ +  L L+I
Sbjct: 565 TFSARLKELPVRVDYLNRFRSTKDKNQILQDLSEGKIDILIGTHQLVNKNVVFKDLGLLI 624

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + K+        VL +TATPIPRTL  + +   D+S I   P  R PI+
Sbjct: 625 VDEEQKFGVAVKEKIRSLKENIDVLTLTATPIPRTLQFSLMAARDLSVIATPPPNRFPIE 684

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + ++  +    + + +   L  G + ++I  ++E   E +          L     + IA
Sbjct: 685 SDVVRFSET-LIRDGIMYELQRGGQVFFIHNRVENIAEISG-----LVQRLVPD--ARIA 736

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E  + SF  G   +LIATT+IE G+DV +A+ I I NA +FGL+ LHQ+
Sbjct: 737 IGHGQMEGTKLEKTLLSFMQGDFDILIATTIIENGLDVPNANTIFINNANNFGLSDLHQM 796

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   +S ++  R+  ++       G  IA +DL+ R  G++L
Sbjct: 797 RGRVGRSNKKAFCYFITPPHSAMSSDAQKRIKTIEQFSAIGSGIQIAMKDLEIRGAGDLL 856

Query: 635 GIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQDPDLT---SVRGQSIRILLYLY 688
           G +QSG      F   Q  L +++ E+   + K +  Q+ + T    V+   I   L L+
Sbjct: 857 GGEQSGFINEMGFETYQKILQEAIDELKENEFKELYQQEANDTLKSYVKEVQIDTDLELF 916

Query: 689 QYNEAFQFI 697
             ++    +
Sbjct: 917 IPDDYVNIV 925


>gi|73663562|ref|YP_302343.1| transcription-repair coupling factor [Staphylococcus saprophyticus
            subsp. saprophyticus ATCC 15305]
 gi|123761497|sp|Q49V12|MFD_STAS1 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|72496077|dbj|BAE19398.1| transcription-repair coupling factor [Staphylococcus saprophyticus
            subsp. saprophyticus ATCC 15305]
          Length = 1170

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 152/456 (33%), Positives = 234/456 (51%), Gaps = 17/456 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   K  +  +G     +         + P+  T  Q 
Sbjct: 569  EWKKTKAKVQQSVEDMADELIELY--KAREMSVGYKFGPDTAEQNDFEIDFPYELTPDQS 626

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I QDM  +  M R+L GDVG GKT VA+ A   AV  G Q   + P  ILAQQHY
Sbjct: 627  KSIEEIKQDMEIERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHY 686

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  Q+  I V++I+        ++  E +  G   I++GTH L    IQY  L L+
Sbjct: 687  ETLIERMQDFPIEVQLISRFRTTKEVKETKEGLKSGFVDIVVGTHKLLGKDIQYKDLGLL 746

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + ++        VL +TATPIPRTL ++ LG  D+S I   P  R P+
Sbjct: 747  IVDEEQRFGVRHKERIKSLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 806

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + + E L+  LS   + +++  +++   E       E+   L     ++I
Sbjct: 807  QTYVLEQN-TNFIKEALERELSRDGQVFYLYNKVQSIYE-----KREQLQMLMPD--ANI 858

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++ D E  M SF N    +++ TT+IE G+DV +A+ +IIE+A+ FGL+QL+Q
Sbjct: 859  GVAHGQMNERDLEETMLSFINHEYDIIVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQ 918

Query: 579  LRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I     L   +  LS+ +  RL  +K       GF IA  DL  R  G +
Sbjct: 919  LRGRVGRSSRIGYAYFLHPTNKVLSETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNL 978

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            LG +Q G    +     L+  +LE A  + + I  +
Sbjct: 979  LGKQQHGFIDSVGFD--LYSQMLEEAVNEKRGIKAE 1012


>gi|88705083|ref|ZP_01102795.1| transcription-repair coupling factor [Congregibacter litoralis KT71]
 gi|88700778|gb|EAQ97885.1| transcription-repair coupling factor [Congregibacter litoralis KT71]
          Length = 1164

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 146/495 (29%), Positives = 236/495 (47%), Gaps = 20/495 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     +  H P  +    +W    R+       +A Q+  +  R++ ++ +     
Sbjct: 540  QLISRYAGSDPEHAPLHRLGSEQWEKAQRKAREKANDVAAQLLEVYARREAREGVQ--FT 597

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
               +   K     PF  T  Q +AI  +  DM     M R++ GDVG GKT VA+ A   
Sbjct: 598  SPEEDYAKFAAGFPFEETPDQAAAIDAVEADMCGTGVMDRLVCGDVGFGKTEVAMRAAFI 657

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A     Q  ++ P  +LAQQHY   +    N  + +E+I+     +  R+  +R+  G  
Sbjct: 658  ATANARQVAVLVPTTLLAQQHYNSFRDRFANWPVKIEVISRFRAASDTREIAKRLESGDV 717

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L Q  I++  L L+I+DE+HRFGV+Q+  +        +L +TATPIPRTL 
Sbjct: 718  DILIGTHKLIQSDIKFADLGLLIIDEEHRFGVRQKDSIKALRAEVDILTLTATPIPRTLN 777

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   PA R  IKT +   +    + E +      G + +++  ++   +
Sbjct: 778  MALGGMRDLSIIATPPARRLSIKTFVREHDH-GLIKEAVLRESLRGGQVFYVHNEVRTIE 836

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                    +    L      S+A+ HG+M +   E VM  F +    +L+ +T+IE GID
Sbjct: 837  -----QCAQGLKELLPDL--SVAVAHGQMHETQLERVMSDFYHQRHHILVCSTIIETGID 889

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNT 614
            + +A+ III+ A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  ++  
Sbjct: 890  IPNANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLCPPASAMTTDASKRLEAIEAA 949

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
             D   G+ +A  DL+ R  GE+LG +QSG          ++  LL  A +  +      P
Sbjct: 950  GDLGAGYQLATHDLEIRGAGELLGDEQSGQI--QSVGFAMYSQLLRQAVEALRR--GDIP 1005

Query: 672  DLTSVRGQSIRILLY 686
            D+ +    +  + L+
Sbjct: 1006 DVDAPLQATTEVKLH 1020


>gi|291458171|ref|ZP_06597561.1| transcription-repair coupling factor [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419254|gb|EFE92973.1| transcription-repair coupling factor [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 1125

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 221/448 (49%), Gaps = 17/448 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W           + +A ++  L   +Q       P   +    ++     P+  T  Q 
Sbjct: 524 DWQKTKSRVRHAVKEVAKELVALYSARQSASGHRFP--EDSVWQREFEELFPYEETADQL 581

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++   DM  +  M R++ GDVG GKT VAL A    V+   Q   +AP  ILAQQ Y
Sbjct: 582 LAIEETKADMESRKIMDRLICGDVGYGKTEVALRAAFKCVQDSRQVAYLAPTTILAQQIY 641

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +  +   + V ++      A  +K++  +  G+A I IGTH L    + +  L L+
Sbjct: 642 NTFVERMKGFPVNVTLLCRFRSPAQIKKSIADLKAGRADIAIGTHRLLSRDVAFRDLGLL 701

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ RFGV  + ++        VL +TATPIPRTL ++  G  D+S + E P  R P+
Sbjct: 702 VVDEEQRFGVSHKERIKNLKKNVDVLTLTATPIPRTLHMSLAGIRDLSVLEEPPIDRSPV 761

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  N  + + E ++  L+   + Y++  ++   +E        R  +L     + +
Sbjct: 762 QTYVMEYNE-ELIREAVRRELARSGQVYYVHNRVNNIEEVTR-----RVQALVPE--ARV 813

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HG+M++   E +M  F NG   +L++TT+IE G+D+ +A+ +II +A+  GL+QL+Q
Sbjct: 814 AFAHGKMNEGQLEEIMLRFINGEIDVLVSTTIIETGLDIPNANTLIINDADRMGLSQLYQ 873

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           +RGRVGR    +    LY     LS+ S  RL  ++       G  IA  DL+ R  G +
Sbjct: 874 IRGRVGRSSRTAYAFFLYRRGKLLSEESEKRLKAIREFTKLGSGIRIAMRDLEIRGAGNV 933

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARK 661
           LG +Q G  +      EL+  LL  A +
Sbjct: 934 LGAEQHGHME--AVGYELYCKLLSEAVQ 959


>gi|282896750|ref|ZP_06304758.1| Transcription-repair coupling factor [Raphidiopsis brookii D9]
 gi|281198468|gb|EFA73356.1| Transcription-repair coupling factor [Raphidiopsis brookii D9]
          Length = 1202

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 143/430 (33%), Positives = 228/430 (53%), Gaps = 17/430 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +     ++ G     +    +++  + P+ PT  Q  A++D+ +DM     M R++ G
Sbjct: 599  LQLYAARSQQEGFSYPQDMPWQEEMEDSFPYQPTIDQLKAVQDVKRDMESPRPMDRLVCG 658

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VA+ A+  AV AG Q  ++AP  IL QQHY  IK+      I V ++     
Sbjct: 659  DVGFGKTEVAIRAIFKAVTAGKQVALLAPTTILTQQHYHTIKERFAPYPIHVGLLNRFRS 718

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               +R   +R+  G+  I++GTH L    +Q+  L L+++DE+ RFGV Q+ K+    T 
Sbjct: 719  PEEKRNIQKRLLTGELDIVVGTHQLLGKGVQFKDLGLLVIDEEQRFGVNQKEKIKTLKTH 778

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL ++ATPIPRTL ++  G  ++S IT  P  R+PI+T + P+N    V   ++  L 
Sbjct: 779  LDVLTLSATPIPRTLYMSLSGIREMSLITTPPPTRRPIQTHLAPLN-PQIVSSAIRQELD 837

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
             G + +++ P++E  +E+  R        L E   S    I HG+M +   ES M +F N
Sbjct: 838  RGGQVFYVVPRVEGIEETTTR--------LREMIPSGRFVIAHGQMDESQLESTMLTFSN 889

Query: 540  GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
                +L+ TT+IE G+D+   + I+IE+A  FGL+QL+QLRGRVGR    +   L Y   
Sbjct: 890  HEADILVCTTIIESGLDIPRVNTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQ 949

Query: 599  -PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
              LS  +  RL  ++       G+ +A  D++ R  G +LG +QSG    +     L+  
Sbjct: 950  RELSDAARQRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMNAIGFD--LYME 1007

Query: 655  LLEIARKDAK 664
            +LE A ++ +
Sbjct: 1008 MLEEAIREIR 1017


>gi|296118194|ref|ZP_06836775.1| transcription-repair coupling factor [Corynebacterium ammoniagenes
            DSM 20306]
 gi|295968752|gb|EFG81996.1| transcription-repair coupling factor [Corynebacterium ammoniagenes
            DSM 20306]
          Length = 1223

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 145/504 (28%), Positives = 250/504 (49%), Gaps = 22/504 (4%)

Query: 188  WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            W+  D L   S  +  E+ ++     K    +W +  ++  A    +AG++  L  ++Q 
Sbjct: 560  WVPMDSLDMLSKYTGGESPHL----SKMGGSDWKNTKKKARAAVREIAGELVELYAKRQA 615

Query: 248  KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
                  P   +     ++  N P+  T+ Q  AI  + +DM  +  M R++ GDVG GKT
Sbjct: 616  APGHQFP--PDTPWQMEMEDNFPYVETEDQMMAIDAVKEDMESQVPMDRVIVGDVGYGKT 673

Query: 308  LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             VA+ A   AV+ G Q  ++ P  +LAQQHY+   +      + + +++        ++ 
Sbjct: 674  EVAVRAAFKAVQDGKQVAVLVPTTLLAQQHYDTFVERMGGFPLEIRVLSRFTSTKESKEI 733

Query: 368  LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            ++++A G+  ++IGTH L Q  + +  L L+IVDE+ RFGV+ +  +     +  VL M+
Sbjct: 734  IKQLATGEIDVVIGTHRLLQTGVHWKSLGLIIVDEEQRFGVEHKEHIKALKASVDVLTMS 793

Query: 428  ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            ATPIPRTL ++  G  ++S I   P  R P+ T +       +V   ++  L    + ++
Sbjct: 794  ATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYED-KQVAAAIRRELLRDGQTFF 852

Query: 488  ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            I  ++ +  E   R + +          + + + HG+M++   E  +  F +    +L+ 
Sbjct: 853  IHNKVADI-EKKAREIRDLVPE------ARVVVAHGQMNEELLEKTVQGFWDREYDVLVC 905

Query: 548  TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSY 605
            TT++E G+D+ +A+ +I+ENA H GL+QLHQLRGRVGR  E      LY     L++ SY
Sbjct: 906  TTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTETSY 965

Query: 606  TRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
             RL+ +    D   G  +A +DL+ R  G +LG +QSG         +L+  L+  A   
Sbjct: 966  DRLATIAQNNDLGAGMDVAMKDLEMRGAGNVLGAQQSGHI--AGVGFDLYVRLVSEAVDA 1023

Query: 663  AKHIL-TQDPDLTSVRGQSIRILL 685
             K +   + P  T    + IRI L
Sbjct: 1024 FKALARGEVPKATDNGPKEIRIDL 1047


>gi|227501542|ref|ZP_03931591.1| possible transcription-repair coupling factor [Corynebacterium
            accolens ATCC 49725]
 gi|227077567|gb|EEI15530.1| possible transcription-repair coupling factor [Corynebacterium
            accolens ATCC 49725]
          Length = 1213

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 237/474 (50%), Gaps = 20/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q           +     ++  N PF  T+ Q 
Sbjct: 588  DWKNTKKKARAAVREIAGELVDLYAKRQAAPGHQFA--PDNPWQAEMEDNFPFVETEDQM 645

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  + +DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH+
Sbjct: 646  LAIDAVKEDMESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGTQVAVLVPTTLLAQQHF 705

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + + +++    +    +  + +A G   I++GTH L Q  + +  L L+
Sbjct: 706  DTFSERMAGFPVKMAVLSRFTSKKEATEIFKGLADGSIDIVVGTHRLLQTGVHWKNLGLI 765

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +     +  VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 766  VVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 825

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T +       +V   ++  L    + ++I  ++ + +        ++   L +    + 
Sbjct: 826  LTYVGAYED-KQVAAAIRRELLRDGQTFFIHNKVSDIE--------KKARELRDLVPEAR 876

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I + HG+M++   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLH
Sbjct: 877  IVVAHGQMNEDVLEKTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLH 936

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G 
Sbjct: 937  QLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGN 996

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD-PDLTSVRGQSIRILL 685
            +LG +QSG         +L+  L+  A +  K +   + P +T    + IRI L
Sbjct: 997  VLGAQQSGHI--AGVGFDLYVRLVGEAVEAFKSLARGEAPAVTDEGPKEIRIDL 1048


>gi|149912292|ref|ZP_01900862.1| putative transcription-repair coupling factor [Moritella sp. PE36]
 gi|149804626|gb|EDM64687.1| putative transcription-repair coupling factor [Moritella sp. PE36]
          Length = 1106

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 151/510 (29%), Positives = 244/510 (47%), Gaps = 23/510 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S          P  K     W     + +     +A ++  +  ++  K        
Sbjct: 533  HLISRYSGAGETSAPLHKLGSDSWVKSKNKAMERVRDVAAELLDIYAQRAAKSGFQYKC- 591

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             + +         PF  T  Q++AI+D++ DM Q   M R++ GDVG GKT VA+ A   
Sbjct: 592  -DKESYAAFADGFPFEETDDQKTAIQDVMDDMRQNKTMDRLICGDVGFGKTEVAMRAAFM 650

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A+    Q  ++ P  +LAQQH+E  K    N  + VE+I+       ++  L  + +G+ 
Sbjct: 651  AMMNDKQVAVLVPTTLLAQQHFENFKDRFANWPVRVEVISRFKTAKEQKLILADVKNGKV 710

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             ++IGTH L  + I+Y  L L+++DE+HRFGV+Q+ K+        +L +TATPIPRTL 
Sbjct: 711  DLLIGTHKLLSNKIEYADLGLLVIDEEHRFGVRQKEKVKALRADIDILTLTATPIPRTLN 770

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   PA R  +KT +   +  + V E +   +  G + Y++   ++   
Sbjct: 771  MAMNGMRDLSIIATPPAKRLAVKTFVRQYDE-NIVKEAIMREIMRGGQVYFLHNNVDSID 829

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                   VE    L     + I   HG+M++ + ESVM  F +    +L+ TT+IE GID
Sbjct: 830  -----KTVEALAELIPE--ARIVAAHGQMAERELESVMADFYHQRFNVLVCTTIIETGID 882

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            +  A+ II++ A++ GLAQLHQLRGRVGR    +   LL   P  +S ++  RL  + + 
Sbjct: 883  IPSANTIIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRISSDAKKRLEAIASL 942

Query: 615  E---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH-----I 666
            E    GF +A  DL+ R  GE+LG +QSG          L+  +L+ A K  K      +
Sbjct: 943  EVLGAGFTLATHDLEIRGAGELLGDEQSGQIT--SVGFALYMDMLDQAVKSIKQGKSVSL 1000

Query: 667  LTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
                 + T +  +   +L   Y ++   + 
Sbjct: 1001 EEALKNQTEIELRVPALLPDDYIHDVNIRL 1030


>gi|68536576|ref|YP_251281.1| transcription-repair coupling factor [Corynebacterium jeikeium K411]
 gi|68264175|emb|CAI37663.1| transcription-repair coupling factor [Corynebacterium jeikeium K411]
          Length = 1258

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 143/474 (30%), Positives = 238/474 (50%), Gaps = 20/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +AG++  L   +Q     G     +    +++    PF+ T+ Q 
Sbjct: 625  DWKNTKRKARGAVREIAGELVQLYASRQAA--PGYAFAADTPWQREMEDAFPFTETEDQY 682

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+ +  DM +   M R++ GDVG GKT VA+ A   AV++G Q  ++ P  +LAQQHY
Sbjct: 683  NAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQHY 742

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  Q+    ++ ++     A  +K +  +A G   I+IGTH L Q  + +  L L+
Sbjct: 743  NTFSERMQDFPTTIKELSRFTTPAESKKVIAGMADGTVDIVIGTHRLLQTGVHWKNLGLI 802

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 803  IVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 862

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T +        V   ++  L    + +++  ++        RS+ +    +      + 
Sbjct: 863  LTYVGAQED-KHVAAAIRRELLRDGQVFYVHNKV--------RSIEQTAADIRRLVPEAR 913

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + + HG+MS+   E+ +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLH
Sbjct: 914  VVVAHGQMSEEQLETTVKGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLH 973

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G 
Sbjct: 974  QLRGRVGRSRERGYAYFLYPKGEVLTETSYDRLTTIAQNNDLGAGMAVAMKDLEMRGAGN 1033

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP-DLTSVRGQSIRILL 685
            +LG +QSG         +L+  L+  A +  + +    P D      + IRI L
Sbjct: 1034 VLGAEQSGHI--AGVGFDLYVRLVGEAVEAFRAMADGKPVDGREEEKKEIRIDL 1085


>gi|303232983|ref|ZP_07319663.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4]
 gi|302480910|gb|EFL43990.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4]
          Length = 1138

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 143/457 (31%), Positives = 228/457 (49%), Gaps = 17/457 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W+       A  + LA  +  L  R+Q     G   + + +  + +  + P++ T  QE
Sbjct: 552 DWSRACSRARASAKKLAFDLVDLYTRRQTVHGYG--FSYDNQAQRDMEASFPYTLTSDQE 609

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A+ DI  DM Q   M R+L GDVG GKT VAL A     + G Q +++ P  ILAQQH+
Sbjct: 610 RALADIKADMEQAKPMDRLLCGDVGFGKTEVALRAAFKCCQDGKQVMVLCPTTILAQQHF 669

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E   +      + V +++  +  A +R+ALE  + G   ++IGTH L    +    L LV
Sbjct: 670 ETFFERFTPFDLCVRVLSRFISPAEQRRALEGFSAGDVDVLIGTHRLLSSDVNPANLGLV 729

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGVQ + +L        VL ++ATPIPRT+ +   G  D+S I   P GRK +
Sbjct: 730 IIDEEQRFGVQHKEQLKTIREQVDVLTLSATPIPRTMQMAMSGVRDMSLILTPPPGRKSV 789

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
              +   +  D + + ++  L+   + Y++  ++           +ER  S      + +
Sbjct: 790 IVHVGEWD-ADVISDAIRFELARSGQVYYVSNRVATID-----QAIERVRS--AAPEARV 841

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+MS    E VM SF      +L+ATT+IE GID    + +IIE+A+  GLAQL+Q
Sbjct: 842 GVAHGQMSAAQIEDVMLSFAEREIDVLVATTIIESGIDNPHTNTLIIEDAQRLGLAQLYQ 901

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL---KNTEDGFLIAEEDLKQRKEGEI 633
           L+GRVGRG   +   +++    PL+  +  RL  +   +    G  IA +DL+ R  G +
Sbjct: 902 LKGRVGRGRLQAYAYIMFPETQPLTDEARRRLEAIYEHQELGSGMRIAMKDLEIRGAGSL 961

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           +G +Q G    +      H  +L  A +D +     D
Sbjct: 962 VGAEQHGNLSSVGFDLFTH--MLSEAVRDIRGQHQDD 996


>gi|119512690|ref|ZP_01631763.1| transcriptional-repair coupling factor [Nodularia spumigena CCY9414]
 gi|119462657|gb|EAW43621.1| transcriptional-repair coupling factor [Nodularia spumigena CCY9414]
          Length = 1164

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 143/449 (31%), Positives = 235/449 (52%), Gaps = 18/449 (4%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
             +  R R A  +L    + L   R + +         +    +++  + P+  T  Q  A
Sbjct: 568  NTKNRVRKAIKKLAVDLLKLYAARSKQEGYTY---PQDMPWQEEMEDSFPYQATTDQLKA 624

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            ++D+ +DM     M R++ GDVG GKT VA+ A+  AV +G Q  ++AP  IL QQHY  
Sbjct: 625  VQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTSGKQVALLAPTTILTQQHYHT 684

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            +K+      + + ++        RR   +R+A G+  I++GTH L   ++ +  L L++V
Sbjct: 685  LKERFAPYPVNIGLLNRFRSAEERRTIQKRLATGELDIVVGTHQLLGKNVSFRDLGLLVV 744

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+ RFGV Q+ K+    T   VL ++ATPIPRTL ++  G  ++S IT  P  R+PIKT
Sbjct: 745  DEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSLITTPPPTRRPIKT 804

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             + P++  + V   ++  L  G + +++ P++E  +E          N          AI
Sbjct: 805  HLAPLS-PEIVRSAIRQELDRGGQVFYVVPRVEGIEEL-------TANLREMIPGGKFAI 856

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HGR+ + + ES M +F NG   +L+ TT+IE G+D+   + I+IE+A  FGL+QL+QLR
Sbjct: 857  AHGRLDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILIEDAHRFGLSQLYQLR 916

Query: 581  GRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
            GRVGR    +   L Y     LS  +  RL  ++       G+ +A  D++ R  G +LG
Sbjct: 917  GRVGRAGIQAHAWLFYPKQRTLSDAARQRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLG 976

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             +QSG  + +     L+  +LE A ++ +
Sbjct: 977  AEQSGQMEAIGFD--LYMEMLEEAIREIR 1003


>gi|81429216|ref|YP_396217.1| transcription-repair coupling factor [Lactobacillus sakei subsp.
            sakei 23K]
 gi|78610859|emb|CAI55911.1| Transcription-repair coupling factor (TRCF) [Lactobacillus sakei
            subsp. sakei 23K]
          Length = 1173

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 138/446 (30%), Positives = 226/446 (50%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +  A  E +A  +  L  +++ +   G     + ++         +  T  Q 
Sbjct: 569  EWQKTKSKVSAKIEDIADDLIELYAQREAE--KGYAFPKDDQLQADFENQFAYPETDDQL 626

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VAL A   AV AG Q   + P  ILAQQHY
Sbjct: 627  RSTAEIKHDMEKVRPMDRLLVGDVGFGKTEVALRAAFKAVAAGKQVAFLVPTTILAQQHY 686

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +     +  + + +++    +      L+ +  GQ  I+IGTH L    + +  L L+
Sbjct: 687  ENMLARFADFPVELGLLSRFKTRKEVTATLKGLEKGQVDIVIGTHRLLSKDVVFKDLGLL 746

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   P  R PI
Sbjct: 747  IVDEEQRFGVKHKERLKQLKAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPI 806

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + E ++  L    + +++  ++ + +       V+   +L     +++
Sbjct: 807  QTYVMEQN-AGAMREAIERELERNGQVFYLHNRVSDIE-----QTVDEIQALVPE--ATV 858

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E V+  F  G   +L+ TT+IE G+D+ + + +I+E+A+H+GL+QL+Q
Sbjct: 859  GYAHGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNVNTMIVEDADHYGLSQLYQ 918

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGR+GR   ++    +Y P   L++ S  RL  +K+      GF IA  DL  R  G +
Sbjct: 919  LRGRIGRSSRVAYGYFMYKPDKVLTEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNL 978

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G    +     L+  +L  A
Sbjct: 979  LGKQQHGFIDSVGFD--LYSQMLSEA 1002


>gi|332198663|gb|EGJ12746.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA41317]
          Length = 1169

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 234/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|218666669|ref|YP_002424872.1| transcription-repair coupling factor [Acidithiobacillus ferrooxidans
            ATCC 23270]
 gi|218518882|gb|ACK79468.1| transcription-repair coupling factor [Acidithiobacillus ferrooxidans
            ATCC 23270]
          Length = 1149

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 147/466 (31%), Positives = 232/466 (49%), Gaps = 18/466 (3%)

Query: 226  ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            +  A  + +     LL +  +     G           + +   PF  T  Q+ AI  ++
Sbjct: 556  KAKARQKAVDAASELLDIYARRAARTGRAFPEPDDAYWEFVSRFPFEETPDQQQAIDAVI 615

Query: 286  QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
             DM+  + M R++ GDVG GKT VAL A   A  +G Q  ++ P  +LAQQHYE  +   
Sbjct: 616  ADMTSPHPMDRLVCGDVGFGKTEVALRAAFLAAHSGAQVAVLVPTTLLAQQHYENFRNRC 675

Query: 346  QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
                + VE+++        ++ L  ++ G+  I+IGTH L Q  + ++ L L+I+DE+HR
Sbjct: 676  AGLPLRVEVLSRFQNAKTHKQVLTAVSVGEVDILIGTHRLLQKDVAFHDLGLLILDEEHR 735

Query: 406  FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            FGV+Q+ ++        +L +TATPIPRTL L+  G  D+S I   P  R+P++T +   
Sbjct: 736  FGVRQKERIKALRAEVDILTLTATPIPRTLNLSLAGLRDLSIIATPPQRRQPVRTFVQIW 795

Query: 466  NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
            +    VIE  +  L  G + Y++  ++ + +      +      L       +A  HG+M
Sbjct: 796  DD-ATVIEACQRELHRGGQVYFLHNEVRDIE-----RMAATLRRLLPEARLRVA--HGQM 847

Query: 526  SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
             + + E+VM  F +    +L+ TT+IE GID   A+ I+I  A+ FGLAQLHQLRGRVGR
Sbjct: 848  PEGELEAVMLDFYHQRFDILLCTTIIESGIDNPHANTILINRADKFGLAQLHQLRGRVGR 907

Query: 586  GEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
              + +   L       +S ++  RL  +++ ED   GF +A  DL+ R  GE+LG +QSG
Sbjct: 908  SHQRAYAYLFTPDLRAMSDDARRRLDAIQSLEDLGVGFALASHDLEIRGAGELLGEEQSG 967

Query: 641  MPKFLIAQPELHDSLLEIARKDAKHILTQDP-DLTSVRGQSIRILL 685
                      L    L+ A +  +    +DP  L   R     I L
Sbjct: 968  HMD--EVGFTLFMEWLDDAVEAIRA--GRDPRSLEEQRTSGPEIHL 1009


>gi|294792288|ref|ZP_06757436.1| transcription-repair coupling factor [Veillonella sp. 6_1_27]
 gi|294457518|gb|EFG25880.1| transcription-repair coupling factor [Veillonella sp. 6_1_27]
          Length = 1098

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 145/581 (24%), Positives = 274/581 (47%), Gaps = 44/581 (7%)

Query: 106 FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN----SQDVNFPLIEAVYS 161
           + ++   L+N   +G++I              +    Y+ HN     + +    IE    
Sbjct: 402 YGQQKRKLRNKPKKGQEI---------NYFTDLTPGDYVVHNMHGIGKYIGLKTIE---- 448

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
              G+     +  I  A +    L  ++  + L +       E    +    K    +W+
Sbjct: 449 -TEGIH----RDYIEIAYAGTDKL--FLPANNLDQLQKYIGNE--GDVPRINKMGGRDWS 499

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
               +     + LA ++  +    Q +   G     +    Q+     P+  T+ Q  A 
Sbjct: 500 KVVTKAKKSIDDLADKLVEIYA--QREITEGFAFLPDQPWQQEFEDAFPYEETEDQLQAT 557

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +I + M +   M R+L GDVG GKT VA+ A+  AV +G Q  ++ P  +LAQQH++  
Sbjct: 558 AEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLVPTTVLAQQHFQTF 617

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
                   + V+++      + +++ L+ +  G   ++IGTH+L    + +  L +++VD
Sbjct: 618 LNRFAPFGVKVDVLNRFRTTSEKKQILKGVEDGSIDVLIGTHSLLNKKVVFKDLGMLVVD 677

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+ RFGV Q+ K  + A+   VL ++ATPIPRTL ++ +G  ++S I   P  R P++T 
Sbjct: 678 EEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGVREMSVINTPPEERLPVQTY 737

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           ++  + ++ + + +K  L+ G + Y++  ++          + E   S       ++A  
Sbjct: 738 VVEYD-MNLIADAIKRELARGGQVYFVYNRVASIN-----HMGELLESALPGLRYAVA-- 789

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M+    E +M  F  G   +L++T++IE G+D+ +A+ III +A+  GL+QL+Q+RG
Sbjct: 790 HGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQLYQMRG 849

Query: 582 RVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636
           RVGR    +    +Y P   LS+ +  RL  ++   +   GF +A  DL+ R  G +LG 
Sbjct: 850 RVGRSRRRAYAYFMYRPDKILSEAAEKRLKAIEEFTELGAGFKLAMRDLEIRGAGNLLGS 909

Query: 637 KQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           +Q G      F +    L +++ +   K+ +  ++ DP + 
Sbjct: 910 QQHGNIASVGFGMYVSMLEEAIAKAQNKEVERDVSIDPAID 950


>gi|300172731|ref|YP_003771896.1| transcription-repair coupling factor [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887109|emb|CBL91077.1| transcription-repair coupling factor [Leuconostoc gasicomitatum LMG
           18811]
          Length = 1172

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 145/450 (32%), Positives = 235/450 (52%), Gaps = 22/450 (4%)

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EW    R+  A  E +A  +  L  +++ ++        +     K      +  T  Q
Sbjct: 564 VEWAKTKRQVAAKIEDIADDLLELYAKREAQQG--YAFPPDDTEQLKFDMAFGYPETPDQ 621

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +I++I  DM +   M R+L GDVG GKT VAL A+  AV AG Q   +AP  IL QQH
Sbjct: 622 IRSIEEIKVDMQKVRPMDRLLVGDVGFGKTEVALRAVFKAVHAGKQVAFLAPTTILVQQH 681

Query: 338 YEF-IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           YE  + ++     I + +++     A  +  ++++   Q  I++GTH L    + +  L 
Sbjct: 682 YETMLARFNDFPNIKIGVLSRFQTTAQNKFVIKQLNEHQIDIVVGTHRLLSKDVDFLDLG 741

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+I+DE+ RFGV+ + +L Q   +  VL +TATPIPRTL +  +G  D+S I   PA R 
Sbjct: 742 LLIIDEEQRFGVKHKERLKQLRHSVDVLTLTATPIPRTLNMAMVGARDLSIIETPPANRY 801

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
           PI+T ++  + I  V   ++  L+ G +A+++  ++ +          +R  S  E    
Sbjct: 802 PIQTYVLEADWI-IVRNAIEKELARGGQAFYLHNRVADI---------DRVASQIEDLVP 851

Query: 516 -SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + +  IHG+MS+   ESV+  F NG   +L+ TT+IE G+D+ +A+ +I+ENA+H GL+
Sbjct: 852 SARVGAIHGQMSETQLESVLYDFLNGNYDVLVTTTIIETGVDIPNANTLIVENADHMGLS 911

Query: 575 QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
           QL+QLRGRVGR   ++     Y      S+ +  RL  +++      GF IA  DL  R 
Sbjct: 912 QLYQLRGRVGRSARLAYAYFTYPFSRTPSEEAEKRLEAIRDFTELGSGFRIAMRDLSIRG 971

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            G+ILG +Q G    +     ++  +L+ A
Sbjct: 972 AGDILGKQQHGFIDSVGYD--MYTKMLKDA 999


>gi|294794147|ref|ZP_06759284.1| transcription-repair coupling factor [Veillonella sp. 3_1_44]
 gi|294455717|gb|EFG24089.1| transcription-repair coupling factor [Veillonella sp. 3_1_44]
          Length = 1098

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 148/581 (25%), Positives = 274/581 (47%), Gaps = 44/581 (7%)

Query: 106 FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN----SQDVNFPLIEAVYS 161
           + ++   L+N   +G++I              +    Y+ HN     + +    IE    
Sbjct: 402 YGQQKRKLRNKPKKGQEI---------NYFTDLTPGDYVVHNMHGIGKYIGLKTIE---- 448

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
              G+     +  I  A +    L  ++  + L +       E    +    K    +W+
Sbjct: 449 -TEGIH----RDYIEIAYAGTDKL--FLPANNLDQLQKYIGNE--GDVPRINKMGGRDWS 499

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
               +     + LA ++  +    Q +   G     +    Q+     P+  TK Q  A 
Sbjct: 500 KVVTKAKKSIDDLADKLVEIYA--QREITEGFAFLPDQPWQQEFEDAFPYEETKDQLQAT 557

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +I + M +   M R+L GDVG GKT VA+ A+  AV +G Q  ++ P  +LAQQH++  
Sbjct: 558 AEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLVPTTVLAQQHFQTF 617

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
                   + V+++      + +++ L+ +  G   I+IGTH+L    + +  L +++VD
Sbjct: 618 LNRFAPFGVKVDVLNRFRTTSEKKQILKGVEDGSIDILIGTHSLLNKKVVFKDLGMLVVD 677

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+ RFGV Q+ K  + A+   VL ++ATPIPRTL ++ +G  ++S I   P  R P++T 
Sbjct: 678 EEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGVREMSVINTPPEERLPVQTY 737

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           ++  + ++ + + +K  L+ G + Y++  ++          + E   S       +IA  
Sbjct: 738 VVEYD-MNLIADAIKRELARGGQVYFVYNRVASIN-----HMGELLESALPGLRYAIA-- 789

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M+    E +M  F  G   +L++T++IE G+D+ +A+ III +A+  GL+QL+Q+RG
Sbjct: 790 HGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQLYQMRG 849

Query: 582 RVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636
           RVGR    +    +Y P   LS+ +  RL  ++   +   GF +A  DL+ R  G +LG 
Sbjct: 850 RVGRSRRRAYAYFMYRPDKILSEAAEKRLKAIEEFTELGAGFKLAMRDLEIRGAGNLLGS 909

Query: 637 KQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           +Q G      F +    L +++ +   K+ +  ++ DP + 
Sbjct: 910 QQHGNIASVGFGMYVSMLEEAIAKAQNKEVERDVSIDPAID 950


>gi|78186513|ref|YP_374556.1| transcription-repair coupling factor [Chlorobium luteolum DSM 273]
 gi|78166415|gb|ABB23513.1| Transcription-repair coupling factor [Chlorobium luteolum DSM 273]
          Length = 1109

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 146/473 (30%), Positives = 240/473 (50%), Gaps = 18/473 (3%)

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            P  +K       AR+     ++    I L+ +  Q K + G     +    ++   +  
Sbjct: 473 RPVLSKLGSPKWAARKEKVRSKIRDIAINLIKLYAQRKMQAGFAFGPDSIFMREFESSFI 532

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q  AI+++ +DM   + M R++ GD G GKT +A+ A   AVEA  Q  I+ P 
Sbjct: 533 FEETPDQLKAIEEVKKDMQATHPMDRLICGDAGFGKTEIAMRAAFKAVEAKKQVAILTPT 592

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH E   +   N  I + I++  +P+A +++ + RI  G+  I+IGTH L    +
Sbjct: 593 TILAHQHLETFTRRFLNFPITIAILSRFVPRAEQQETIRRIKEGKVDIVIGTHRLVSKDV 652

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L+++DE+  FGV+ + KL ++      L M+ATPIPRTL  + LG  D+S ++ 
Sbjct: 653 SFRDLGLLVIDEEQHFGVEVKEKLREQFPGVDTLTMSATPIPRTLQFSMLGARDLSIVST 712

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R+P++TV+      D +   ++  ++   + +++  ++    E       +  + L
Sbjct: 713 PPKNRQPVETVVTDFEG-DLIRSAIEREIAREGQVFFLHNRVASLGEMQ-----QLLHDL 766

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + I   HG+M   + E +M     G   +LI+TT+I  GID+ +A+ III  A+ 
Sbjct: 767 VPR--ARIVFAHGQMPARELEKIMMDVMQGEVDVLISTTIIGSGIDISNANTIIINRADM 824

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDL 625
           FGL+ L+QLRGRVGR +  + C L+  P   L + +  RL+V++       GF IA  DL
Sbjct: 825 FGLSDLYQLRGRVGRSDRKAHCYLITPPLNTLKREAIQRLAVIESFTELGSGFTIALRDL 884

Query: 626 KQRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQD--PDL 673
             R  G +LG +QSG      F + Q  L  ++ E+   D  H+ T +  PDL
Sbjct: 885 DIRGAGNLLGAEQSGYIHDLGFDLYQKMLEQTVAELKSGDFSHLFTGEARPDL 937


>gi|172056088|ref|YP_001812548.1| transcription-repair coupling factor [Exiguobacterium sibiricum
            255-15]
 gi|171988609|gb|ACB59531.1| transcription-repair coupling factor [Exiguobacterium sibiricum
            255-15]
          Length = 1171

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 139/453 (30%), Positives = 235/453 (51%), Gaps = 17/453 (3%)

Query: 218  FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
             EW     +     E +A ++  L   ++    +G     +    Q    + P+  T  Q
Sbjct: 567  MEWKKVKAKVQKSVEDIADELIKLYAAREAA--VGFAFPEDDDSTQAFEASFPYEETVDQ 624

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
              +I++I +DM +   M R+L GDVG GKT VA+ A   AV AG Q  ++ P  +LAQQH
Sbjct: 625  LRSIEEIKKDMERPRPMDRLLCGDVGYGKTEVAIRAAFKAVMAGKQVALLVPTTVLAQQH 684

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE + +   +  I V +++     A  +   + +  G   +++GTH +    +Q+  + L
Sbjct: 685  YETMLERFSDWPINVSVMSRFRSAAELKATKKGLKEGTIDVVVGTHRVLSKDVQFADVGL 744

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +I+DE+ RFGV+ + +L Q  T   VL +TATPIPRTL ++ +G  D+S +   P  R P
Sbjct: 745  LIIDEEQRFGVKHKERLKQLKTNVDVLTLTATPIPRTLHMSMIGIRDLSVLETPPENRYP 804

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            ++T ++  + I  + E L+  L  G +A+++  ++E           E   +L     + 
Sbjct: 805  VQTYVMEYDGI-VMREALERELGRGGQAFFLYNRVE-----GIERKAEEIRALVPE--AR 856

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +   HGRM++ + ES + +F  G   +L++TT+IE GID+ + + +I+ +A+  GL+QL+
Sbjct: 857  VVTAHGRMTETELESQLIAFFEGDADVLVSTTIIETGIDIPNVNTLIVNDADQMGLSQLY 916

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++     Y P   L++ + +RL  +K       GF IA  DL  R  G 
Sbjct: 917  QLRGRVGRSSRVAYSYFTYRPQKRLTEVAESRLQAIKEFTELGSGFKIAMRDLSIRGAGN 976

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            +LG +QSG    +     L+  +L  A ++ K 
Sbjct: 977  LLGSQQSGFIDSVGFD--LYSQMLSEAVEERKE 1007


>gi|293375931|ref|ZP_06622192.1| transcription-repair coupling factor [Turicibacter sanguinis PC909]
 gi|292645453|gb|EFF63502.1| transcription-repair coupling factor [Turicibacter sanguinis PC909]
          Length = 1176

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 129/430 (30%), Positives = 218/430 (50%), Gaps = 15/430 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            + +  Q +   G   + +           P+  T+ Q  A+ +I +DM Q + M R+L G
Sbjct: 587  IKIYAQREHLPGYAFSKDTIEQHAFENAFPYVETEDQLKAVTEIKEDMEQPHPMDRLLIG 646

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VA+ A   AV  G Q   +AP  IL +QHYE      +   + + ++   + 
Sbjct: 647  DVGYGKTEVAMRAAFKAVMDGKQVAYLAPTTILTKQHYESFVSRFKEFPVKIGLLNRYVS 706

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               +++ L  I  G+  I++GTH L    +++  L L+I+DE+ RFGV+ + K+ +  T 
Sbjct: 707  LKEQQELLTNIKSGKIDIVVGTHRLLSKDVKFKDLGLLIIDEEQRFGVEHKEKIKEFKTE 766

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL +TATPIPRTL ++ +G   +S I   P  R P++T ++  +    + + ++  L+
Sbjct: 767  VDVLTLTATPIPRTLQMSMIGIRSLSLIETPPMNRYPVQTYVLEEHD-GVIRDAIERELA 825

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
               + +++  ++ + +         R   L     + +   HG+MS    E  M  F++ 
Sbjct: 826  RDGQVFYLYNRVSDIE-----KRAARIKKLVPD--AIVEYAHGQMSKEQLEQTMADFEDK 878

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
               +L+ TT+IE GID+ +A+ +II ++   GL+QL+QLRGRVGR + I+    +Y    
Sbjct: 879  KFNVLVCTTIIETGIDIPNANTLIISDSYRLGLSQLYQLRGRVGRSDRIAYAYCMYPKNK 938

Query: 600  -LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
             L++N+  RL  +K       GF IA  DL  R  G++LG +Q G         +L+  L
Sbjct: 939  VLTENAEKRLQTIKEFTELGSGFKIAMRDLAIRGAGDMLGAQQYGFIDT--VGLDLYTQL 996

Query: 656  LEIARKDAKH 665
            L  A   A+ 
Sbjct: 997  LSEAVVHARE 1006


>gi|88813291|ref|ZP_01128530.1| Transcription-repair coupling factor [Nitrococcus mobilis Nb-231]
 gi|88789463|gb|EAR20591.1| Transcription-repair coupling factor [Nitrococcus mobilis Nb-231]
          Length = 1146

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 234/473 (49%), Gaps = 21/473 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R        +A ++  +  R+   +             +      PF  T  Q+
Sbjct: 547  QWERACRRAAERARDVAAELLEIYARRAAAQGHAYCFPRSD--YEAFSSQFPFEETPDQQ 604

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  +L D+     M R++ GDVG GKT VA+ A    V+   Q  ++ P  +LAQQH+
Sbjct: 605  QAIDGVLSDLESSRPMDRVVCGDVGFGKTEVAMRAAFIGVQDSRQVAVLVPTTLLAQQHF 664

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +    +  I +E ++       +  AL+ +A G+  I+IGTH L QDS+++  L LV
Sbjct: 665  RNFRDRFADWPIRIEQLSRFRSSKEQNTALQDLAAGKVDIVIGTHKLLQDSVRFKNLGLV 724

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+HRFGV+Q+ +L +  T   VL++TATPIPRTL +   G  D+S I   PA R  +
Sbjct: 725  IIDEEHRFGVRQKEQLKRLRTNVDVLMLTATPIPRTLNMALAGLRDMSIIATPPARRLAV 784

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
            KT +   N    + E     L  G + Y++  +I        RS+      LHE    + 
Sbjct: 785  KTFVNQWND-ALIQEACLRELHRGGQVYFLHNEI--------RSIERIARQLHELIPDAR 835

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + I HG+M + + E VM  F +    +L+ TT+IE GIDV  A+ III  A+  GLA+L+
Sbjct: 836  VRIAHGQMRETELERVMLDFYHQRFNVLVCTTIIESGIDVPSANTIIINRADRLGLARLY 895

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR    +   L+  P   ++ ++  RL  + + ED   GF +A  DL+ R  GE
Sbjct: 896  QLRGRVGRSHHRAYAYLIAPPKNLMTPDAVKRLEAIASLEDLGVGFSLASHDLEIRGAGE 955

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ--DPDLTSVRGQSIRI 683
            +LG +QSG          L+  LLE A +  +       DP   S     +RI
Sbjct: 956  LLGDEQSGQI--QEVGFTLYSELLERAVQSLRAGREPVFDPQSDSATEVDLRI 1006


>gi|148988910|ref|ZP_01820325.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP6-BS73]
 gi|147925721|gb|EDK76797.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP6-BS73]
          Length = 1169

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|320527116|ref|ZP_08028303.1| transcription-repair coupling factor [Solobacterium moorei F0204]
 gi|320132444|gb|EFW24987.1| transcription-repair coupling factor [Solobacterium moorei F0204]
          Length = 1130

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 136/476 (28%), Positives = 252/476 (52%), Gaps = 18/476 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    +   +  E +A ++  L   ++  + IG   + + ++ +K   +  F  T  QE
Sbjct: 531 DWEKTKKRLQSNVEDIAERLLSLYANRE--QHIGFAFSKDNEMTKKFENSFSFDLTPDQE 588

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A+ +I +DM     M R++ GDVG GKT V++ A   AV    Q  ++ P  ILA+QH+
Sbjct: 589 KAVAEIKKDMESNKPMDRLICGDVGFGKTEVSIRASFKAVCDNKQVAVLCPTTILAEQHF 648

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              +K  Q   + V+++   +  A +++ L+ +  G+  IIIGTH L    +++  L L+
Sbjct: 649 HTFQKRYQEFPVTVKVLNRFVSPAEQKQILKELEEGKVDIIIGTHRLLSKDVKFKDLGLL 708

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ RFGV+ + K+ +      VL ++ATPIPRTL ++ +G   +S +   P  R  +
Sbjct: 709 VVDEEQRFGVEHKEKIKELKNGVDVLSLSATPIPRTLQMSLVGIRSLSLLETPPLNRYSV 768

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  ++ + + + ++  LS   + +++   I++       ++     SL     S +
Sbjct: 769 QTYVVEKDK-NLIRDAIQKELSRNGQVFYLHNNIDQIY-----NIARNIQSLVPE--SRV 820

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I+HG++  ++ E +M  F      +L+ TT++E GID+ + + I+++NA+ FGLAQ++Q
Sbjct: 821 GIVHGKLGKVEIEDIMQRFIEKELDILVCTTIVENGIDIPNVNTILVDNAQDFGLAQIYQ 880

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEI 633
           ++GRVGR + ++   LL  P   LS+ +  RL+ +K       G+ IA  DL  R  G++
Sbjct: 881 IKGRVGRSDRLAYAYLLIPPRRQLSEVAQKRLTAVKEFARLGSGYKIAMRDLTIRGAGDL 940

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           LG  QSG         +++  +LE A +  K    Q+ DLT     +I+   Y+ +
Sbjct: 941 LGSNQSGFIDT--VGIDMYIEMLEEAIQAKKDGRKQE-DLTPRPKANIQTTSYIPE 993


>gi|313892911|ref|ZP_07826488.1| transcription-repair coupling factor [Veillonella sp. oral taxon
           158 str. F0412]
 gi|313442264|gb|EFR60679.1| transcription-repair coupling factor [Veillonella sp. oral taxon
           158 str. F0412]
          Length = 1055

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 146/581 (25%), Positives = 274/581 (47%), Gaps = 44/581 (7%)

Query: 106 FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN----SQDVNFPLIEAVYS 161
           + ++   L+N   +G++I              +    Y+ H+     + +    IE    
Sbjct: 402 YGQQKRKLRNKPKKGQEI---------NYFTDLTPGDYVVHSMHGIGKYIGLKTIE---- 448

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
              G+     +  I  A +    L  ++  + L +       E    +    K    +W 
Sbjct: 449 -TEGIH----RDYIEIAYAGTDKL--FLPANNLDQLQKYIGNE--GDVPRIHKMGGRDWA 499

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
               +     + LA ++  +    Q +   G     +    Q+     P+  T+ Q  A 
Sbjct: 500 KVVTKAKKSIDDLADKLVEIYA--QREITEGFAFLPDQPWQQEFEDAFPYEETEDQLQAT 557

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +I + M +   M R+L GDVG GKT VA+ A+  AV +G Q  ++ P  +LAQQH++  
Sbjct: 558 AEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLVPTTVLAQQHFQTF 617

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
                   + V+++      A +++ L+ + +G   ++IGTH+L    + +  L +++VD
Sbjct: 618 LNRFAPFGVKVDVLNRFRSTAEKKQVLKGVENGSIDVLIGTHSLLNKKVVFKDLGMLVVD 677

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+ RFGV Q+ K  + A+   VL ++ATPIPRTL ++ +G  ++S I   P  R P++T 
Sbjct: 678 EEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGVREMSVINTPPEERLPVQTY 737

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           ++  + ++ V + +K  L+ G + Y++  ++          + E   +       +IA  
Sbjct: 738 VVEYD-MNLVADAIKRELARGGQVYFVYNRVASIN-----HMGELLEAALPDLRYAIA-- 789

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M+    E +M  F  G   +L++T++IE G+D+ +A+ III +A+  GL+QL+Q+RG
Sbjct: 790 HGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQLYQMRG 849

Query: 582 RVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636
           RVGR    +    +Y P   LS+ +  RL  ++   +   GF +A  DL+ R  G +LG 
Sbjct: 850 RVGRSRRRAYAYFMYRPDKMLSEAAEKRLKAIEEFTELGAGFKLAMRDLEIRGAGNLLGS 909

Query: 637 KQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           +Q G      F +    L +++ +   K+ +  ++ DP + 
Sbjct: 910 QQHGNIASVGFGMYVSMLEEAIAKAQNKEVEREVSIDPAID 950


>gi|197116614|ref|YP_002137041.1| transcription-repair coupling factor [Geobacter bemidjiensis Bem]
 gi|197085974|gb|ACH37245.1| transcription-repair coupling factor [Geobacter bemidjiensis Bem]
          Length = 1157

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 142/456 (31%), Positives = 227/456 (49%), Gaps = 17/456 (3%)

Query: 212  PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
            PR  +         +  A  E+      LL +    + + G   +    + +    +  F
Sbjct: 559  PRLDRLGAAGWEKAKAKARAEVQEMAAELLKIHAAREVQQGFKFSPADDMYRAFEASFAF 618

Query: 272  SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
              T  Q  AI  ++ DM     M R++ GDVG GKT VA+ A   +   G Q  I+ P  
Sbjct: 619  EETPDQAQAIDQVIADMESPRPMDRLVCGDVGYGKTEVAMRAAFKSTLDGKQVAILVPTT 678

Query: 332  ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
            +LAQQH E      ++  + VE+++       +++ LE +  G+  I+IGTH L Q  + 
Sbjct: 679  VLAQQHAESFASRLKDYPVRVEMLSRFRTPQQQKQILEGVKKGEVDIVIGTHRLLQKDVV 738

Query: 392  YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
            +  L L+IVDE+ RFGV  + +L Q      +L +TATPIPRTL ++ +G  D+S I   
Sbjct: 739  FKDLGLLIVDEEQRFGVAHKERLKQFRAVVDILTLTATPIPRTLYMSLMGIRDLSIIDTP 798

Query: 452  PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            P  R  IKT +   +  + + E +   L  G + +++  +++                L 
Sbjct: 799  PVDRLAIKTFVSRSSD-ELIREAVLRELRRGGQVFFVHNRVQTIGAM--------AEELK 849

Query: 512  EHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + IA+ HG+M++ + E VM SF +G   LL+ TT+IE G+D+  A+ +I+  A+ 
Sbjct: 850  RIVPEAKIAVGHGQMAEKELEQVMLSFMHGETNLLLCTTIIESGLDIPTANTLIVNRADT 909

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDL 625
            FGL+QL+QLRGRVGR +  +   LL      +S  +  RL +L+   +   GF IA  DL
Sbjct: 910  FGLSQLYQLRGRVGRSKSRAYAYLLIPGEGAISPEARERLKILQELTELGAGFRIATHDL 969

Query: 626  KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            + R  G++LG +QSG         EL+  LL+ A +
Sbjct: 970  ELRGAGDLLGARQSG--DIAAVGFELYTELLDEAVR 1003


>gi|148984550|ref|ZP_01817838.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP3-BS71]
 gi|147923327|gb|EDK74441.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799155|emb|CBW31667.1| putative putative transcription-repair coupling factor
           [Streptococcus pneumoniae OXC141]
          Length = 1169

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|312898732|ref|ZP_07758121.1| transcription-repair coupling factor [Megasphaera micronuciformis
           F0359]
 gi|310620163|gb|EFQ03734.1| transcription-repair coupling factor [Megasphaera micronuciformis
           F0359]
          Length = 1092

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 122/446 (27%), Positives = 221/446 (49%), Gaps = 17/446 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +     + LA ++  L  +++     G     +    Q+     P+  T+ Q 
Sbjct: 496 DWKKARAKAQKSIDNLAEKLVALYAKRE--ITDGYAFPPDTPFQQEFEEAFPYEETQDQL 553

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A+  I + M +   M  ++ GDVG GKT VA+ A   AV  G Q  ++ P  +LAQQHY
Sbjct: 554 KAVAAIKESMEKPVPMDCLVCGDVGFGKTEVAVRAAFKAVMGGKQVAVLVPTTVLAQQHY 613

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +   +  ++  ++ +++        R++ L+++  GQ  ++IGTH++   ++++    L+
Sbjct: 614 QTFSERFRSFGVVCDVLNRFRSIKERKEILQKVEAGQIDVLIGTHSILNKNVKFKDAGLL 673

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV Q+ K    AT   VL ++ATPIPRTL ++ +    +  I   P  R P+
Sbjct: 674 IVDEEQRFGVAQKEKWKTWATGIDVLTLSATPIPRTLHMSLVHLRQMCLIETPPTERLPV 733

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T +   +    V + +      G + +++  ++   +            +L      +I
Sbjct: 734 QTYVTEYDG-AIVRDAIMREKRRGGQVFFVYNRVATMERMKV-----ELEALVPEV--TI 785

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+M+    E+ M  F  G   +L+ ++++E G+D+ +A+ II+ +A+ FGL+QL+Q
Sbjct: 786 GMAHGQMTGSVLEANMFDFYEGEYDVLLCSSLVENGLDIANANTIIVYDADRFGLSQLYQ 845

Query: 579 LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           +RGRVGR    +    LY  +  L++ +  RL  +K       GF IA  DL+ R  G +
Sbjct: 846 MRGRVGRSHRTAYAYFLYRRNKILNEVAEKRLQAVKEFTELGSGFKIAMRDLEIRGAGNL 905

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIA 659
           LG +Q G          ++  +LE A
Sbjct: 906 LGREQHG--NIAGVGFVMYVQMLEEA 929


>gi|149003146|ref|ZP_01828055.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP14-BS69]
 gi|237651085|ref|ZP_04525337.1| transcription-repair coupling factor [Streptococcus pneumoniae CCRI
           1974]
 gi|237821198|ref|ZP_04597043.1| transcription-repair coupling factor [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147758887|gb|EDK65883.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP14-BS69]
          Length = 1169

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|229829772|ref|ZP_04455841.1| hypothetical protein GCWU000342_01869 [Shuttleworthia satelles DSM
            14600]
 gi|229791761|gb|EEP27875.1| hypothetical protein GCWU000342_01869 [Shuttleworthia satelles DSM
            14600]
          Length = 1185

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 148/479 (30%), Positives = 239/479 (49%), Gaps = 27/479 (5%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPR--KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            DLLQK        A      PR       EW+          E +A ++  L   +Q   
Sbjct: 560  DLLQKY-------AGADARRPRLNSLGSQEWSRTKSRVKRAVESVARELVELYAVRQE-- 610

Query: 250  EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
            + G     +    ++     P+  T+ Q  AI+ + +DM     M R++ GDVG GKT +
Sbjct: 611  DKGYAYGPDTVWQREFEEAFPYEETEGQLEAIEAVKKDMESPKIMDRLICGDVGFGKTEI 670

Query: 310  ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            AL A   A + G Q V + P  ILAQQHY+   +      I V ++     +  + + + 
Sbjct: 671  ALRAAFKAAQEGKQVVYLVPTTILAQQHYDTFVQRMAPYPIKVGLLCRFRNKTQQAQTVS 730

Query: 370  RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             +A G+  I+IGTH      + +  L L+I+DE+ RFGV+ + K+ Q      VL ++AT
Sbjct: 731  ELASGRVDIVIGTHRALSRDVVFRDLGLLIIDEEQRFGVRHKEKIKQMKKNVDVLSLSAT 790

Query: 430  PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            PIPRTL ++ +G  D+S + E P  R PI+T +   N  + + E +   ++ G + Y++ 
Sbjct: 791  PIPRTLHMSLVGIRDMSILDEAPMERTPIQTFVFEHND-EMIREAVLREMARGGQIYYVF 849

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             ++ +  +        R   L     + +A  HGRMS    E++M  F +G   LL++TT
Sbjct: 850  NRVAQIADMT-----ARLQKLLPE--AHVAYAHGRMSQTRLENIMVDFIDGEIDLLVSTT 902

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
            +IE+G+D+ + + III++A++ GL+QL+QLRGRVGR    +    +Y     L + +  R
Sbjct: 903  IIEIGLDISNVNTIIIDDADNMGLSQLYQLRGRVGRSNRTAYAFFMYRRGKLLKEVAEKR 962

Query: 608  LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL-EIARKD 662
            L  +K   D   GF IA  DL+ R  G +LG  QSG  + +     L+  +L E  R++
Sbjct: 963  LLAIKEFSDLGSGFKIAMRDLEIRGAGNVLGESQSGHMESVGYD--LYCKMLGEAVRQE 1019


>gi|121611273|ref|YP_999080.1| transcription-repair coupling factor [Verminephrobacter eiseniae
            EF01-2]
 gi|121555913|gb|ABM60062.1| transcription-repair coupling factor [Verminephrobacter eiseniae
            EF01-2]
          Length = 1174

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 155/574 (27%), Positives = 252/574 (43%), Gaps = 36/574 (6%)

Query: 133  KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-----SRLPVLPE 187
            + +                   L + V     G+    ++ ++   L        P L E
Sbjct: 473  RRKKQEQVSDVEALIKDLAELNLGDPVVHSAHGI--GRYRGLVHMDLGQPNPDGTPALQE 530

Query: 188  WIEKDL---------LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQ 237
            ++  +          + +    S          P  K    +W    R+        A +
Sbjct: 531  FLHLEYADQAVLYVPVSQLQQISRYTGVGADEAPLHKLGSGQWEKARRKAAEQVRDSAAE 590

Query: 238  IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
            +  +  R+  ++       +  +  +       F  T  Q +AI+ ++QDM     M R+
Sbjct: 591  LLDIYARRAAREG--HAFRLATQDYEAFADEFGFEETADQRAAIEAVIQDMVSPRPMDRL 648

Query: 298  LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
            + GDVG GKT VAL A   AV  G Q   +AP  +LA+QHY+ +        + V  ++ 
Sbjct: 649  VCGDVGFGKTEVALRAAFVAVSGGRQVAFLAPTTLLAEQHYQTLLDRFGPWPVKVAEVSR 708

Query: 358  NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                     +L  I  G   I++GTH L   +I+++ L L+I+DE+HRFGV+ + ++ Q 
Sbjct: 709  FRSGKEVAASLAGIGDGTVDIVVGTHKLLSGAIRFHDLGLLIIDEEHRFGVRHKEQMKQL 768

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                 VL +TATPIPRTL +   G  D+S I   P  R  IKT +        + E +  
Sbjct: 769  RAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRNEG-TGVIREAVLR 827

Query: 478  VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
             L  G + Y++  ++E  +        +R   +     + IA+ HG+M +   E VM  F
Sbjct: 828  ELKRGGQVYFLHNEVETIE-----HRRQRLEEILPE--ARIAVAHGQMPERALERVMRDF 880

Query: 538  KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                  LL+ +T+IE GIDV  A+ I++  A+ FGLAQLHQLRGRVGR    +   L+  
Sbjct: 881  VAQRYNLLLCSTIIETGIDVPTANTILMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVP 940

Query: 598  PP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
                L++ +  RL     ++    GF +A  DL+ R  G++LG  QSG    L    +L+
Sbjct: 941  DTEGLTRQAAQRLDAIQQMEELGSGFYLALHDLEIRGAGQVLGENQSGNM--LEVGFQLY 998

Query: 653  DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            + +L  A K  +    ++PDL      +  I L+
Sbjct: 999  NEMLAEAVKALRA--GKEPDLLGPLSATTDINLH 1030


>gi|326803014|ref|YP_004320832.1| transcription-repair coupling factor [Aerococcus urinae
            ACS-120-V-Col10a]
 gi|326650035|gb|AEA00218.1| transcription-repair coupling factor [Aerococcus urinae
            ACS-120-V-Col10a]
          Length = 1183

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 134/455 (29%), Positives = 230/455 (50%), Gaps = 18/455 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    +      E +A  +  L   ++ +   G   + + +         P+  T  Q 
Sbjct: 574  EWQKTKQRVSKKIEDIADDLVDLYAERETR--KGYAFSPDNEDQAAFEDEFPYPETDDQL 631

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +IK+I  DM ++  M R+L GDVG GKT VA+ A   A+  G Q   + P  +LAQQHY
Sbjct: 632  RSIKEIKADMEKEKPMDRLLVGDVGFGKTEVAMRAAFKAMLDGKQVAFLVPTTVLAQQHY 691

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +  ++    +++++     A ++  ++ +  G   ++IGTH L    I++  L L+
Sbjct: 692  ETMLERFKDYPFTIDLLSRFRSPAEQKHVIKGLKEGSVQLVIGTHRLLSKDIKFLDLGLL 751

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ + +L        VL +TATPIPRTL ++ +G  D+S I   PA R P+
Sbjct: 752  VVDEEQRFGVKAKERLKALRKNVDVLTLTATPIPRTLNMSMMGVRDLSVIETPPANRFPV 811

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    + + ++  L+   + +++   ++  +E            L     + +
Sbjct: 812  QTYVMEQN-YGAIRDAIERELARNGQVFYLFNNVQNIQEKANF-----IEELVPK--ARV 863

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            AI HG+M     E V+  F  G   +L+ TT+IE GID+ + + +++E+A+  GL+ L+Q
Sbjct: 864  AIAHGQMHANQLEEVLMDFLAGDDDVLVTTTIIETGIDMPNVNTLLVEDADRMGLSTLYQ 923

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++    +Y P   L++ S  RL+ LK+  +   GF IA  DL  R  G +
Sbjct: 924  LRGRVGRSNRVAYAYFMYRPDKALNEASEKRLTALKDFTELGAGFKIAMRDLSIRGAGNL 983

Query: 634  LGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKH 665
            LG +Q G    +        L +++ +   K AK 
Sbjct: 984  LGQEQHGFVNSVGYDLFQQMLDEAIRKKQGKAAKR 1018


>gi|225855741|ref|YP_002737252.1| transcription-repair coupling factor [Streptococcus pneumoniae
           P1031]
 gi|225724744|gb|ACO20596.1| transcription-repair coupling factor [Streptococcus pneumoniae
           P1031]
          Length = 1169

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|38233507|ref|NP_939274.1| transcription-repair coupling factor [Corynebacterium diphtheriae
            NCTC 13129]
 gi|38199767|emb|CAE49427.1| transcription-repair coupling factor [Corynebacterium diphtheriae]
          Length = 1264

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 147/492 (29%), Positives = 246/492 (50%), Gaps = 27/492 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G     +     ++  N P+  T+ Q 
Sbjct: 597  DWKNTKKKARAAVREIAGELVELYAKRQSA--PGHAFAPDSPWQHEMEDNFPYVETEDQM 654

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  +  DM + + M R++ GDVG GKT VA+ A   AV+ G Q V++ P  +LAQQH 
Sbjct: 655  LAIDAVKADMEKPSPMDRVVVGDVGYGKTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHL 714

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++      + ++ ++     +  ++ L+ +A G   I+IGTH L Q  +Q+  L LV
Sbjct: 715  STFEERMAGFPVTIKGLSRFTSPSESKEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLV 774

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 775  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPI 834

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T +       +V   ++  L    + +++  ++ + +        ++   L E    + 
Sbjct: 835  LTYVGAQED-KQVAAAIRRELLRDGQVFYVHNKVSDIE--------KKARELRELVPEAR 885

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLH
Sbjct: 886  IVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLH 945

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR  E      LY     L++NSY RL+ +    D   G  +A +DL+ R  G 
Sbjct: 946  QLRGRVGRSRERGYAYFLYPKGATLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGN 1005

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG-QSIRILL------ 685
            +LG +QSG         +L+  L+  A +  + +        + +G + IRI L      
Sbjct: 1006 VLGAQQSGHI--AGVGFDLYVRLVGEAVEAYRALADGKVADATEQGPKEIRIDLPVDAHI 1063

Query: 686  -YLYQYNEAFQF 696
               Y  +E  + 
Sbjct: 1064 PEDYINSERLRL 1075


>gi|269215535|ref|ZP_06159389.1| transcription-repair coupling factor [Slackia exigua ATCC 700122]
 gi|269131022|gb|EEZ62097.1| transcription-repair coupling factor [Slackia exigua ATCC 700122]
          Length = 1150

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 132/452 (29%), Positives = 223/452 (49%), Gaps = 17/452 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W+    +  A  + LA  +  +  R+      G   + +    +++    P++ T  Q 
Sbjct: 557 DWSRAMSKARASTKQLAFDLVDVYTRRSS--VPGFRYSPDNPWQKEMEDAFPYAETPDQL 614

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           SAI ++  DM     M R++ GDVG GKT VAL A   AV+   Q +++ P  ILAQQHY
Sbjct: 615 SAIAEVKADMQSSRPMDRLVCGDVGFGKTEVALRAAFKAVQDDKQVMVLCPTTILAQQHY 674

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              K   +   + VE+++     A +++ L   A G   +++GTH L    +    L LV
Sbjct: 675 ATFKDRFEPFHVSVEVLSRFRTPAEQKETLAGFADGTVDVLVGTHRLLSRDVNPRDLGLV 734

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + +L        VL ++ATPIPRTL ++  G  D S I   P  R+P+
Sbjct: 735 IIDEEQRFGVGHKEQLKNLREHIDVLTLSATPIPRTLQMSLSGVRDTSLILTPPDERRPV 794

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +  +   +  D V + ++  +  G + Y++  ++   +++                 + I
Sbjct: 795 EVHVGEWD-PDIVSDAIRREMQRGGQVYYVSNRVRTIEDALDHVRDA-------APEARI 846

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              HG+M   + E+VM+ F  G   +L+ATT+IE GID    + ++IE+++  GLAQ++Q
Sbjct: 847 GAAHGKMGKEELEAVMEDFAAGAIDVLVATTIIESGIDNPHTNTLVIEDSQRLGLAQMYQ 906

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL---KNTEDGFLIAEEDLKQRKEGEI 633
           L+GRVGR    +    ++    PL++ +  RL  +   +    G  +A  DL+ R  G +
Sbjct: 907 LKGRVGRSSLQAYAYFMFPSEVPLTEEATARLQAIDEHRELGSGMQVAMRDLEIRGAGSL 966

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           LG +QSG         +L   +L  A  DA+ 
Sbjct: 967 LGAEQSG--SVSAVGFDLFAQMLATAFNDARE 996


>gi|168484302|ref|ZP_02709254.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042444|gb|EDT50490.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC1873-00]
 gi|332198870|gb|EGJ12952.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA47368]
          Length = 1169

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLYMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|260589951|ref|ZP_05855864.1| transcription-repair coupling factor [Blautia hansenii DSM 20583]
 gi|260539758|gb|EEX20327.1| transcription-repair coupling factor [Blautia hansenii DSM 20583]
          Length = 1182

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 159/548 (29%), Positives = 265/548 (48%), Gaps = 30/548 (5%)

Query: 130  KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            K++++   +    Y+ H +      + + +  +        + KI     S L +LP  +
Sbjct: 503  KRIQSFNELSIGDYVVHENH--GLGVYKGIEKITVDKVAKDYIKIEYAGGSTLYILPNQL 560

Query: 190  EKDLLQKKSFPSIAEAFNIIHNPRKAK--DFEWTSPARERLAYDELLAGQIALLLMRKQF 247
              D+LQK        A      P+  K    EW     +     + +A  +  L   +Q 
Sbjct: 561  --DMLQKY-------AGADARAPKLNKLGGQEWNKTKTKVRGAVKNIAKDLVRLYAARQA 611

Query: 248  KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
                G     +    ++     PF  T  Q  AI+   QDM  K  M R++ GDVG GKT
Sbjct: 612  --TQGFQYEPDTVWQREFEEMFPFEETDDQLMAIQAAKQDMESKKIMDRLICGDVGYGKT 669

Query: 308  LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             +A+     A + G Q V + P  ILAQQHY    +  ++  + V+++      A ++K 
Sbjct: 670  EIAIRIAFKAAQEGKQVVYLVPTTILAQQHYNTFVQRMKDFPVRVDLLCRFRTPAQQKKT 729

Query: 368  LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            +     G   I+IGTH +  D +++  L L+I+DE+ RFGV  + K+ +      VL +T
Sbjct: 730  IADTQKGLVDILIGTHRVLSDDVKFKDLGLLIIDEEQRFGVTHKEKIKKLKENIDVLTLT 789

Query: 428  ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            ATPIPRTL ++ +G  D+S + E P  R PI+T ++  N  + V E +   L+ G + Y+
Sbjct: 790  ATPIPRTLHMSLIGIRDMSVLEEAPMDRMPIQTYVMEYNE-EMVREAISRELARGGQVYY 848

Query: 488  ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +  ++ +  E        R   L     +++A  HG+M +   E +M SF NG   +L++
Sbjct: 849  VYNRVNDIDEVTN-----RVAKLVPE--ANVAFAHGQMQEHQLEKIMYSFINGEIDVLVS 901

Query: 548  TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605
            TT+IE G+D+ +A+ +II +A+  GL+QL+QLRGRVGR    +   L+Y     L + + 
Sbjct: 902  TTIIETGLDISNANTMIIHDADQMGLSQLYQLRGRVGRSNRTAYAFLMYKKNKMLKEVAE 961

Query: 606  TRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
             RL  ++   D   GF IA  DL+ R  G +LG +Q G         +L+  +L+ A ++
Sbjct: 962  KRLHAIREFTDLGSGFKIAMRDLEIRGAGNLLGAEQHGHM--QAVGYDLYCKMLDEAVRE 1019

Query: 663  AKHILTQD 670
             K +  Q+
Sbjct: 1020 EKGLKQQE 1027


>gi|331084270|ref|ZP_08333375.1| transcription-repair coupling factor [Lachnospiraceae bacterium
            6_1_63FAA]
 gi|330401805|gb|EGG81382.1| transcription-repair coupling factor [Lachnospiraceae bacterium
            6_1_63FAA]
          Length = 1182

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 159/548 (29%), Positives = 265/548 (48%), Gaps = 30/548 (5%)

Query: 130  KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            K++++   +    Y+ H +      + + +  +        + KI     S L +LP  +
Sbjct: 503  KRIQSFNELSIGDYVVHENH--GLGVYKGIEKITVDKVAKDYIKIEYAGGSTLYILPNQL 560

Query: 190  EKDLLQKKSFPSIAEAFNIIHNPRKAK--DFEWTSPARERLAYDELLAGQIALLLMRKQF 247
              D+LQK        A      P+  K    EW     +     + +A  +  L   +Q 
Sbjct: 561  --DMLQKY-------AGADARAPKLNKLGGQEWNKTKTKVRGAVKNIAKDLVRLYAARQA 611

Query: 248  KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
                G     +    ++     PF  T  Q  AI+   QDM  K  M R++ GDVG GKT
Sbjct: 612  --TQGFQYEPDTVWQREFEEMFPFEETDDQLMAIQAAKQDMESKKIMDRLICGDVGYGKT 669

Query: 308  LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             +A+     A + G Q V + P  ILAQQHY    +  ++  + V+++      A ++K 
Sbjct: 670  EIAIRIAFKAAQEGKQVVYLVPTTILAQQHYNTFVQRMKDFPVRVDLLCRFRTPAQQKKT 729

Query: 368  LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            +     G   I+IGTH +  D +++  L L+I+DE+ RFGV  + K+ +      VL +T
Sbjct: 730  IADTQKGLVDILIGTHRVLSDDVKFKDLGLLIIDEEQRFGVTHKEKIKKLKENIDVLTLT 789

Query: 428  ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            ATPIPRTL ++ +G  D+S + E P  R PI+T ++  N  + V E +   L+ G + Y+
Sbjct: 790  ATPIPRTLHMSLIGIRDMSVLEEAPMDRMPIQTYVMEYNE-EMVREAISRELARGGQVYY 848

Query: 488  ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +  ++ +  E        R   L     +++A  HG+M +   E +M SF NG   +L++
Sbjct: 849  VYNRVNDIDEVTN-----RVAKLVPE--ANVAFAHGQMQEHQLEKIMYSFINGEIDVLVS 901

Query: 548  TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605
            TT+IE G+D+ +A+ +II +A+  GL+QL+QLRGRVGR    +   L+Y     L + + 
Sbjct: 902  TTIIETGLDISNANTMIIHDADQMGLSQLYQLRGRVGRSNRTAYAFLMYKKNKMLKEVAE 961

Query: 606  TRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
             RL  ++   D   GF IA  DL+ R  G +LG +Q G         +L+  +L+ A ++
Sbjct: 962  KRLHAIREFTDLGSGFKIAMRDLEIRGAGNLLGAEQHGHM--QAVGYDLYCKMLDEAVRE 1019

Query: 663  AKHILTQD 670
             K +  Q+
Sbjct: 1020 EKGLKQQE 1027


>gi|194397105|ref|YP_002036727.1| transcription-repair coupling factor [Streptococcus pneumoniae G54]
 gi|194356772|gb|ACF55220.1| transcription-repair coupling factor [Streptococcus pneumoniae G54]
          Length = 1169

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|168493994|ref|ZP_02718137.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575852|gb|EDT96380.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC3059-06]
          Length = 1169

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|332184209|gb|AEE26463.1| Transcription-repair coupling factor [Francisella cf. novicida
           3523]
          Length = 1142

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 142/417 (34%), Positives = 218/417 (52%), Gaps = 13/417 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  + +   G   +++ +   +   + P+  T  Q  AI D+ +DM     M R++ G
Sbjct: 566 LEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETPDQLLAINDVFKDMISTKPMDRLICG 625

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT +A+ A   A +   Q  I+ P  ILAQQHY   K    NT + +E+IT +  
Sbjct: 626 DVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQHYNSFKDRFTNTAVNIEVITRSKT 685

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++  E +  G   IIIGTH L    I +  L L+I+DE+HRFGV Q+ KL      
Sbjct: 686 PKAQQQLFENLKKGTVDIIIGTHKLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKALKAE 745

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L M+ATPIPR+L +      D+S I   PA R  +KT +   +  + + E +     
Sbjct: 746 IDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDN-NIIREAVSRETI 804

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  ++E  ++       E    L       IAI HG+MS+ + + VM  FK+ 
Sbjct: 805 RGGQIFYLYNKVETIQKKK-----EILQELFPRL--RIAIAHGQMSEKEIQKVMFDFKHN 857

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--P 598
              +L+ TT+IE GID+ +A+ +IIE+A + GLAQLHQLRGRVGR    +   +L     
Sbjct: 858 KYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNEA 917

Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            ++K++  RL  + NTE    GF +A  DL+ R  GEILG +QSG    +     + 
Sbjct: 918 SITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSGNIDGIGLNLYMD 974


>gi|304437107|ref|ZP_07397070.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304370058|gb|EFM23720.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 1097

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 153/474 (32%), Positives = 231/474 (48%), Gaps = 23/474 (4%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
            LLQK        A        +    +W     +     E +A  +  L          
Sbjct: 478 SLLQKY-----IGAEGAAPRLHRMGTADWARAQAKAQKSVEDIADHLIELYA--ARHMSK 530

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G   + +    ++     P+  T  Q  AI +I  DM  +  M R+L GDVG GKT VA+
Sbjct: 531 GHAFSPDDAGQREFEEAFPYQETDDQLRAIAEIKHDMESEKPMDRLLCGDVGFGKTEVAI 590

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   A   G Q  ++ P  +LAQQHY+       +    V+++        +   L  +
Sbjct: 591 RAAYKAAMDGYQVAVLVPTTVLAQQHYQTFAARFADFAPKVDVVCRFRTLREQAATLRDV 650

Query: 372 AHGQAHIIIGTHALFQ-DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           A GQ  I+IGTHA+     +++ KL L+IVDE+ RFGV Q+ K+ + AT   VL ++ATP
Sbjct: 651 ARGQVDILIGTHAILNRKRVRFQKLGLLIVDEEQRFGVTQKEKIKEFATGVDVLTLSATP 710

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL ++  G  D+S I   PA R P+++ ++  +    +   ++  LS G + Y+I  
Sbjct: 711 IPRTLHMSLAGARDMSVIETPPAERLPVQSYVVESSD-AMMRGAIERELSRGGQIYFIYN 769

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           ++E            R + L     + IA  HG+MS+   E VM  F  G   +L+AT++
Sbjct: 770 RVESIDRM-------REHLLQIVPQARIASAHGQMSEDILEQVMMDFYEGHYDILLATSI 822

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL 608
           IE GIDV +A+ III +A+ FGL+QL+Q+RGRVGR  +++     Y     LS+ +  RL
Sbjct: 823 IENGIDVANANTIIIYDADRFGLSQLYQMRGRVGRSAKMAFAYFTYRRDKVLSETAEKRL 882

Query: 609 SVLKNT---EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             +K       GF IA  DL+ R  G +LG +Q G         E++  LLE A
Sbjct: 883 QAMKEFARLGSGFKIAMRDLEIRGAGSLLGAQQHGHI--AGVGFEMYVKLLEEA 934


>gi|189423769|ref|YP_001950946.1| transcription-repair coupling factor [Geobacter lovleyi SZ]
 gi|189420028|gb|ACD94426.1| transcription-repair coupling factor [Geobacter lovleyi SZ]
          Length = 1165

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 148/445 (33%), Positives = 242/445 (54%), Gaps = 17/445 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     +     E LA ++  +  ++Q     G   +   ++ ++     P+  T  Q S
Sbjct: 575  WEKTRSKARKNIEELAAELLEVYAKRQA--SQGYSFSPPDELFREFEATFPWEETPDQLS 632

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+D+L DM     M R++ GDVG GKT VAL A   AV  G Q  ++ P  ILAQQH+E
Sbjct: 633  AIQDVLGDMQHSRPMDRLVCGDVGYGKTEVALRAAFKAVLDGKQVALLVPTTILAQQHFE 692

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  ++  + +E+++       ++ +LER+  G+  IIIGTH L Q  + +  L L+I
Sbjct: 693  TFSTRLKDYPVSIEMLSRFRSVKEQKISLERLKEGKLDIIIGTHRLLQKDVSFKDLGLLI 752

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV+ + +L Q   +  ++ +TATPIPRTL L+ LG  D+S I   P  R+ IK
Sbjct: 753  VDEEQRFGVKDKERLKQYRASVDIMTLTATPIPRTLHLSMLGIRDLSIIDTPPVDRQAIK 812

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            TV+   +  D + + +   L  G + +++  +       +   V ER   L     + I+
Sbjct: 813  TVV-ARDTDDLIRDAITRELERGGQVFYVHNR-----AHSIGIVAERLRQLVP--QARIS 864

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E VM +F +G   LL+ TT+IE G+D+  A+ ++++ A+ FGL+QL+QL
Sbjct: 865  VAHGQMEEKELEKVMLTFMHGQSDLLLTTTIIESGLDIPRANTMLVDRADTFGLSQLYQL 924

Query: 580  RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGR+GR    S   LL      +++++  RL ++++  +   GF IA  DL+ R  G++L
Sbjct: 925  RGRIGRSTVKSYAYLLIPGQGSITQDARERLKIIQDISELGAGFRIATHDLELRGAGDML 984

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIA 659
            G +QSG    +    EL+  +LE A
Sbjct: 985  GPRQSGTVADI--GFELYTQMLEEA 1007


>gi|168576116|ref|ZP_02722021.1| transcription-repair coupling factor [Streptococcus pneumoniae
           MLV-016]
 gi|307066642|ref|YP_003875608.1| transcription-repair coupling factor [Streptococcus pneumoniae
           AP200]
 gi|183578032|gb|EDT98560.1| transcription-repair coupling factor [Streptococcus pneumoniae
           MLV-016]
 gi|306408179|gb|ADM83606.1| Transcription-repair coupling factor (superfamily II helicase)
           [Streptococcus pneumoniae AP200]
          Length = 1169

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|266619807|ref|ZP_06112742.1| transcription-repair coupling factor [Clostridium hathewayi DSM
            13479]
 gi|288868593|gb|EFD00892.1| transcription-repair coupling factor [Clostridium hathewayi DSM
            13479]
          Length = 1178

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 139/446 (31%), Positives = 222/446 (49%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A  +  L   +Q     G     +    ++     P+  T+ Q 
Sbjct: 579  QWNKTKTRVKGAVREIAKDLVQLYAARQ--DTQGFQYGPDTVWQKEFEEMFPYEETEDQL 636

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI     DM  +  M R++ GDVG GKT +AL A   AV+   Q V + P  ILAQQHY
Sbjct: 637  DAIDSTKSDMESRKIMDRLICGDVGYGKTEIALRAAFKAVQDEKQVVYLVPTTILAQQHY 696

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  ++  + V++++     +  +K LE +  G   I+IGTH +    +Q+  L L+
Sbjct: 697  NTFVQRMKDFPVRVDLMSRFRTPSQVKKTLEDLKRGLVDIVIGTHRVLSKDVQFKDLGLL 756

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ +G  D+S + E P  R PI
Sbjct: 757  IIDEEQRFGVAHKEKIKKLKENIDVLTLTATPIPRTLHMSLVGIRDMSVLEEPPVDRMPI 816

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + V E +   LS G + Y++  ++    E           SL     +++
Sbjct: 817  QTYVMEYND-EMVREAINRELSRGGQVYYVYNRVSNIDEVAGH-----IASLVPE--ATV 868

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M + + E +M  F NG   +L+ TT+IE G+D+ +A+ +II++A+  GL+QL+Q
Sbjct: 869  TFAHGQMHEHELERIMFDFVNGEIDVLVCTTIIETGLDIPNANTMIIQDADRMGLSQLYQ 928

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    S   L+Y     L + +  RL  ++       G  IA  DL+ R  G +
Sbjct: 929  LRGRVGRSSRTSYAFLMYKRDKMLREEAEKRLQAIREFTELGSGIKIAMRDLEIRGAGNV 988

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +Q G  + +     L+  LL  A
Sbjct: 989  LGAEQHGHMEAVGYD--LYCKLLNQA 1012


>gi|89256268|ref|YP_513630.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314722|ref|YP_763445.1| transcription-repair coupling factor TRCF [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156502334|ref|YP_001428399.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254367605|ref|ZP_04983626.1| transcription-repair coupling factor, ATP-dependent [Francisella
           tularensis subsp. holarctica 257]
 gi|89144099|emb|CAJ79356.1| Transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. holarctica LVS]
 gi|115129621|gb|ABI82808.1| transcription-repair coupling factor TRCF [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253416|gb|EBA52510.1| transcription-repair coupling factor, ATP-dependent [Francisella
           tularensis subsp. holarctica 257]
 gi|156252937|gb|ABU61443.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 1141

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 143/417 (34%), Positives = 217/417 (52%), Gaps = 13/417 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  + +   G   ++  +   +   + P+  T  Q SAI D+ +DM     M R++ G
Sbjct: 566 LEIYAKREMRQGFSNSLNEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICG 625

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT + + A   A +   Q  I+ P  ILAQQHY   K    NT I +E+IT +  
Sbjct: 626 DVGFGKTEITMRAAFLATQNQKQVAILVPTTILAQQHYNSFKDRFTNTAINIEVITRSKT 685

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++  E +  G   IIIGTH L    I +  L L+I+DE+HRFGV Q+ KL      
Sbjct: 686 SKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAE 745

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L M+ATPIPR+L +      D+S I   PA R  +KT +   +  + + E +     
Sbjct: 746 IDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDN-NIIREAVSRETI 804

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  ++E  ++       E    L       IAI HG+MS+ + + VM  FK+ 
Sbjct: 805 RGGQIFYLYNKVETIQKKK-----EILQELFPRL--RIAIAHGQMSEKEIQKVMFDFKHN 857

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
              +L+ TT+IE GID+ +A+ +IIE+A + GLAQLHQLRGRVGR    +   +L     
Sbjct: 858 KYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNKA 917

Query: 600 -LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            ++K++  RL  + NTE    GF +A  DL+ R  GEILG +QSG    +     + 
Sbjct: 918 SITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSGNIDGIGLNLYMD 974


>gi|149013378|ref|ZP_01834087.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP19-BS75]
 gi|182682976|ref|YP_001834723.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CGSP14]
 gi|303254907|ref|ZP_07340992.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS455]
 gi|303259732|ref|ZP_07345708.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP-BS293]
 gi|303262199|ref|ZP_07348144.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265395|ref|ZP_07351302.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS397]
 gi|303266057|ref|ZP_07351951.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS457]
 gi|303268465|ref|ZP_07354259.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS458]
 gi|147762901|gb|EDK69849.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP19-BS75]
 gi|182628310|gb|ACB89258.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CGSP14]
 gi|301800979|emb|CBW33640.1| putative putative transcription-repair coupling factor
           [Streptococcus pneumoniae INV200]
 gi|302598178|gb|EFL65239.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS455]
 gi|302636839|gb|EFL67329.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639284|gb|EFL69743.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP-BS293]
 gi|302641966|gb|EFL72319.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS458]
 gi|302644361|gb|EFL74614.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS457]
 gi|302645072|gb|EFL75312.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS397]
          Length = 1169

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|198282679|ref|YP_002219000.1| transcription-repair coupling factor [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198247200|gb|ACH82793.1| transcription-repair coupling factor [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 1116

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 147/466 (31%), Positives = 232/466 (49%), Gaps = 18/466 (3%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +  A  + +     LL +  +     G           + +   PF  T  Q+ AI  ++
Sbjct: 523 KAKARQKAVDAASELLDIYARRAARTGRAFPEPDDAYWEFVSRFPFEETPDQQQAIDAVI 582

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            DM+  + M R++ GDVG GKT VAL A   A  +G Q  ++ P  +LAQQHYE  +   
Sbjct: 583 ADMTSPHPMDRLVCGDVGFGKTEVALRAAFLAAHSGAQVAVLVPTTLLAQQHYENFRNRC 642

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
               + VE+++        ++ L  ++ G+  I+IGTH L Q  + ++ L L+I+DE+HR
Sbjct: 643 AGLPLRVEVLSRFQNAKTHKQVLTAVSVGEVDILIGTHRLLQKDVAFHDLGLLILDEEHR 702

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+Q+ ++        +L +TATPIPRTL L+  G  D+S I   P  R+P++T +   
Sbjct: 703 FGVRQKERIKALRAEVDILTLTATPIPRTLNLSLAGLRDLSIIATPPQRRQPVRTFVQIW 762

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           +    VIE  +  L  G + Y++  ++ + +      +      L       +A  HG+M
Sbjct: 763 DD-ATVIEACQRELHRGGQVYFLHNEVRDIE-----RMAATLRRLLPEARLRVA--HGQM 814

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            + + E+VM  F +    +L+ TT+IE GID   A+ I+I  A+ FGLAQLHQLRGRVGR
Sbjct: 815 PEGELEAVMLDFYHQRFDILLCTTIIESGIDNPHANTILINRADKFGLAQLHQLRGRVGR 874

Query: 586 GEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             + +   L       +S ++  RL  +++ ED   GF +A  DL+ R  GE+LG +QSG
Sbjct: 875 SHQRAYAYLFTPDLRAMSDDARRRLDAIQSLEDLGVGFALASHDLEIRGAGELLGEEQSG 934

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDP-DLTSVRGQSIRILL 685
                     L    L+ A +  +    +DP  L   R     I L
Sbjct: 935 HMD--EVGFTLFMEWLDDAVEAIRA--GRDPRSLEEQRTSGPEIHL 976


>gi|116074923|ref|ZP_01472184.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916]
 gi|116068145|gb|EAU73898.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916]
          Length = 1194

 Score =  346 bits (888), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 141/464 (30%), Positives = 233/464 (50%), Gaps = 20/464 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W             +A  +  L    +  +  G    ++G    ++  + P+ PT  Q  
Sbjct: 573  WVKAKERASKAVRKVALDLVKLYA--ERHQAPGFAFPIDGPWQTELEDSFPYEPTPDQLK 630

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            A  ++ +DM +   M R++ GDVG GKT VA+ A+  A+ AG Q  ++AP  +LAQQH+ 
Sbjct: 631  ATAEVKRDMEKSQPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWR 690

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             + +      I V ++        R+  LE +  G    ++GTH L   S  + KL L++
Sbjct: 691  TLSERFAPYPIKVALLNRFRTAGERKTILEGLKKGTIDAVVGTHQLLSKSTAFDKLGLLV 750

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  ++S IT  P  R+PIK
Sbjct: 751  VDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIK 810

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T +  ++  + V   ++  L  G + +++ P+++  +        E    L E      +
Sbjct: 811  THLAALDE-EAVRSAIRQELDRGGQVFYVVPRVQGIE--------EVAGKLREMLPGLKL 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++ + ES M +F  G   +++ TT++E G+D+   + I+IE+A  FGLAQL+Q
Sbjct: 862  LVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRVNTILIEDAHRFGLAQLYQ 921

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L Y     LS  +  RL  ++       G+ +A  D++ R  G +
Sbjct: 922  LRGRVGRSGIQAHAWLFYPGDASLSDAARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNL 981

Query: 634  LGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            LG++QSG  +   F +    L +SL EI  +D   +     DL 
Sbjct: 982  LGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPAVDDTQVDLQ 1025


>gi|147669732|ref|YP_001214550.1| transcription-repair coupling factor [Dehalococcoides sp. BAV1]
 gi|146270680|gb|ABQ17672.1| transcription-repair coupling factor [Dehalococcoides sp. BAV1]
          Length = 1148

 Score =  346 bits (888), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 138/456 (30%), Positives = 227/456 (49%), Gaps = 20/456 (4%)

Query: 212 PRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
           P         EW     +     E  A ++  +  +++     G   + +    Q++  +
Sbjct: 546 PPSLHRLGTQEWQRAKEKASESAEETARELLEIYAKRELA--SGYAFSADTVWQQEMEAS 603

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             +  T  Q  A+ D+ +DM +   M R++ GDVG GKT VA+ A   AV  G Q  ++ 
Sbjct: 604 FSYVETPDQLKALYDVKEDMEKPRPMDRLILGDVGYGKTEVAIRAAFKAVMDGKQVAVLV 663

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQHY   ++      + VE+++    Q+ +++ +E +  G+  I IGTH L Q 
Sbjct: 664 PTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQKEVVENLEKGEVDICIGTHRLLQA 723

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            I++  L LV++DE+ RFGV  +    +      VL ++ATPIPRTL ++ +G  D+S I
Sbjct: 724 DIKFKDLGLVVIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSMVGVRDMSII 783

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R PIKTV+   +    + E +   +    + +++  ++          + ER  
Sbjct: 784 ETPPGERLPIKTVVAAFDER-LIREAILREMERNGQVFFVNNRV-----MGINLLAERIQ 837

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L     + I I HG+M++    +VM  F      +L+ TT+IE G+DV +A+ +II  A
Sbjct: 838 QLVPE--ARIGIGHGQMAEEKLAAVMADFVRHELDVLVCTTIIESGVDVPNANTLIINRA 895

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL---KNTEDGFLIAEE 623
           + FGL QL+QLRGRVGR  +++    LY     LS ++  RL  +        G+ IA +
Sbjct: 896 DRFGLTQLYQLRGRVGRSSQLAYAYFLYEKEKRLSGDAEKRLKTIYEAAELGAGYGIAMK 955

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           DL+ R  G +LG+KQSG    +     L+  +L  A
Sbjct: 956 DLEIRGAGTLLGVKQSGYINSVGFN--LYTQMLSEA 989


>gi|148997952|ref|ZP_01825465.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP11-BS70]
 gi|147755962|gb|EDK63005.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP11-BS70]
          Length = 1118

 Score =  346 bits (888), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 505 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 562

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 563 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 622

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 623 AQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 682

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 683 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 742

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 743 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 793

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 794 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 853

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 854 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 913

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 914 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 943


>gi|289450268|ref|YP_003474746.1| transcription-repair coupling factor [Clostridiales genomosp. BVAB3
            str. UPII9-5]
 gi|289184815|gb|ADC91240.1| transcription-repair coupling factor [Clostridiales genomosp. BVAB3
            str. UPII9-5]
          Length = 1241

 Score =  346 bits (888), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 147/458 (32%), Positives = 228/458 (49%), Gaps = 19/458 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + LA  +  L    + +K  G     E    ++   + PF  T  Q 
Sbjct: 631  DWQKLKNKARDSVKKLAFDLVKLYA--ERRKIKGYKFPPETTWEREFAESFPFEETDDQL 688

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              IK++  DM     M R+L GDVG GKT VA  A+  AV  G QA ++AP  +LAQQHY
Sbjct: 689  RCIKEVSADMESDKVMDRLLCGDVGFGKTEVAFRALFKAVMGGKQAALLAPTTVLAQQHY 748

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E          I V +++     A + K L  +A G   ++IGTH L    +++ KL L+
Sbjct: 749  ENFMNRINGFPIRVGLLSRFANDAMQHKTLSGLATGNIDVVIGTHRLLSKDVKFKKLGLL 808

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + KL        VL ++ATPIPRTL +   G  DIS I E P  R+ +
Sbjct: 809  IIDEEQRFGVEHKEKLKVNYQGVDVLTLSATPIPRTLHMALSGIRDISVIEEAPLDRRSV 868

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T ++  +    VI+ +    S   + +++          N   +  + N L E    + 
Sbjct: 869  LTYVMEYD-PAIVIDAINREFSRHGQVFYLYN--------NTAGIDAKVNELQEALPGAR 919

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IA  HG+MS+   E V++ F  G   +L+ TT+IE GID+ + + +I+ENA+  GLAQL+
Sbjct: 920  IAAGHGKMSEKQLEQVINDFYAGETDILVCTTIIESGIDMPNVNTLIVENADRLGLAQLY 979

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR    +   + Y     L++ +  RL+ +++      GF IA +DL+ R  G 
Sbjct: 980  QLRGRVGRSGRQAYAYITYRRDKVLTEVAEKRLTAIRDFTELGSGFKIAMKDLEVRGAGN 1039

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            ILG +Q G    +     ++  +L+     A+  L  +
Sbjct: 1040 ILGGEQHGQMAAVGYD--MYCRMLDEEIAKAETELNGE 1075


>gi|145641878|ref|ZP_01797453.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           R3021]
 gi|145273500|gb|EDK13371.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           22.4-21]
          Length = 390

 Score =  346 bits (888), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 161/373 (43%), Positives = 234/373 (62%), Gaps = 6/373 (1%)

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA +A   A++ G Q  +MAP  ILA+QH    +++ +   I V  + G +    R+  
Sbjct: 1   MVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGKSRQAE 60

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHV 423
           LE+I  G   +++GTHALFQ+ +++  L LVI+DEQHRFGV QRL L +K       PH 
Sbjct: 61  LEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAGFYPHQ 120

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEG 482
           L+MTATPIPRTL +T   D+D S I E P GR PI TV++   R  E++       ++E 
Sbjct: 121 LIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNACVNEK 180

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGT 541
           ++AYW+C  I+E +    ++    +  L +     +I ++HGRM   +K+ VM  FKN  
Sbjct: 181 RQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAE 240

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             LL+ATTVIEVG+DV +AS++IIENAE  GL+QLHQLRGRVGRG   S C+L+Y PPL 
Sbjct: 241 LDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLG 300

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           K S  RL VL++++DGF+I+E+DL+ R  GE+LG KQ+G+ +  +A       ++   + 
Sbjct: 301 KVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMIPTVQF 360

Query: 662 DAKHILTQDPDLT 674
            AK ++ + PDL 
Sbjct: 361 YAKSLIQKYPDLA 373


>gi|290953610|ref|ZP_06558231.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313111|ref|ZP_06803801.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 1141

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 143/417 (34%), Positives = 217/417 (52%), Gaps = 13/417 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  + +   G   ++  +   +   + P+  T  Q SAI D+ +DM     M R++ G
Sbjct: 566 LEIYAKREMRQGFSNSLNEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICG 625

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT + + A   A +   Q  I+ P  ILAQQHY   K    NT I +E+IT +  
Sbjct: 626 DVGFGKTEITMRAAFLATQNQKQVAILVPTTILAQQHYNSFKDRFTNTAINIEVITRSKT 685

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++  E +  G   IIIGTH L    I +  L L+I+DE+HRFGV Q+ KL      
Sbjct: 686 SKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAE 745

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L M+ATPIPR+L +      D+S I   PA R  +KT +   +  + + E +     
Sbjct: 746 IDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDN-NIIREAVSRETI 804

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  ++E  ++       E    L       IAI HG+MS+ + + VM  FK+ 
Sbjct: 805 RGGQIFYLYNKVETIQKKK-----EILQELFPRL--RIAIAHGQMSEKEIQKVMFDFKHN 857

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
              +L+ TT+IE GID+ +A+ +IIE+A + GLAQLHQLRGRVGR    +   +L     
Sbjct: 858 KYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNKA 917

Query: 600 -LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            ++K++  RL  + NTE    GF +A  DL+ R  GEILG +QSG    +     + 
Sbjct: 918 SITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSGNIDGIGLNLYMD 974


>gi|154483284|ref|ZP_02025732.1| hypothetical protein EUBVEN_00985 [Eubacterium ventriosum ATCC 27560]
 gi|149735794|gb|EDM51680.1| hypothetical protein EUBVEN_00985 [Eubacterium ventriosum ATCC 27560]
          Length = 1168

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 136/456 (29%), Positives = 235/456 (51%), Gaps = 20/456 (4%)

Query: 212  PRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
            P K       EW             +A ++  L      +   G   + + +  ++    
Sbjct: 562  PPKLNTLGGQEWKKTKTRVKKAVADIAKELVQLYA--IRENSNGYQFSPDTEWQKEFEEM 619

Query: 269  IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             PF  T  Q +AI ++ +DM     M R++ GDVG GKT VA+ A   AV+   Q   + 
Sbjct: 620  FPFEETDDQLNAISEVKKDMESTKIMDRLICGDVGFGKTEVAIRAAFKAVQDDKQVAYLV 679

Query: 329  PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            P  +LAQQHY+  K+  ++  + VE+++    +++  K ++ +  G   ++IGTH +   
Sbjct: 680  PTTVLAQQHYKTFKQRFKDFPVRVEMLSRFRTKSNIDKTIKDLNKGYVDVVIGTHRMLSK 739

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +++  L L+I+DE+ RFGV+ + ++ +      V+ +TATPIPRTL ++ +G  D+  +
Sbjct: 740  DVKFKDLGLLIIDEEQRFGVKHKEQIKELKNNVDVMTLTATPIPRTLHMSLIGIRDMCVM 799

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             E P  R PI+T ++  N  +   + +   L+ G + Y++  ++++  E   +       
Sbjct: 800  EEPPQERMPIQTFVMEYNE-EIARDAINRELARGGQVYYVYNRVQDIAEMAGK-----VQ 853

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            +L     +S+A  HG+MS+   E +M  F NG   +L+ TT+IE G+D+ +A+ III +A
Sbjct: 854  ALVPD--ASVAFAHGQMSERQLEEIMYDFVNGDIDVLVTTTIIETGLDIPNANTIIIHDA 911

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEE 623
            E  GL+QL+QLRGRVGR    S   L+Y  +  L++ +  RL  +++      G  IA  
Sbjct: 912  EKMGLSQLYQLRGRVGRSNRTSYAFLMYSRNKMLTEVAEKRLGAIRDFTELGSGVKIAMR 971

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            DL+ R  G +LG  QSG  + +     L+  +L  A
Sbjct: 972  DLEIRGTGNLLGAAQSGHMEDVGYD--LYCKMLNDA 1005


>gi|257062106|ref|YP_003139994.1| transcription-repair coupling factor [Cyanothece sp. PCC 8802]
 gi|256592272|gb|ACV03159.1| transcription-repair coupling factor [Cyanothece sp. PCC 8802]
          Length = 1158

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 151/476 (31%), Positives = 248/476 (52%), Gaps = 21/476 (4%)

Query: 198 SFPSIAEAFNIIHNPRKAKDFE---WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
           SF S++   +   +P +        W    +      + LA  +  L  ++  K+    P
Sbjct: 533 SFDSLSRYRHTGSHPPELHKMTGKIWEKTKQRVRKSIKKLAVDLLNLYAKRAKKEGFIYP 592

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              +    +++  + P+ PT  Q  A++D+  D+     M R++ GDVG GKT VA+ A+
Sbjct: 593 --PDTPWQEELEDSFPYQPTPDQLKAVQDVKMDLESDRPMDRLVCGDVGFGKTEVAVRAI 650

Query: 315 AAAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
             AV +G  Q  ++AP  IL QQHY  +K+      I + ++      + ++  ++R+A 
Sbjct: 651 FKAVTSGHKQVALLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTTSEKKDIVQRLAT 710

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G+  I++GTH L   S+++  L L+++DE+ RFGV Q+ K+    T   VL +TATPIPR
Sbjct: 711 GELDIVVGTHQLLGQSVKFKNLGLLVIDEEQRFGVNQKEKIKALKTEVDVLTLTATPIPR 770

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL ++  G  +IS IT  P  R+PIKT +   N  D V   ++  L  G + +++ P++E
Sbjct: 771 TLYMSLSGIREISLITTPPPSRRPIKTHLSSYN-PDVVRTAIRNELDRGGQIFYVVPRVE 829

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             +E   +             ++ I I HG+M   D E  M  F NG   +L+ TT+IE 
Sbjct: 830 GIEEVAGQIQ-------QMVPSARIVIAHGQMDVNDLEMTMLGFNNGEADILVCTTIIES 882

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL 611
           G+D+   + II+E+A+ FGL+QL+QLRGRVGR    +   LLY     LS+ +  RL  L
Sbjct: 883 GLDIPRVNTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLLYPNKGQLSETARQRLRAL 942

Query: 612 KNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           +       G+ +A  D++ R  G +LG +QSG    +    EL+  +L+ A K+ +
Sbjct: 943 QEFSQLGSGYQLATRDMEIRGVGNLLGAEQSGQMMAI--GFELYMEMLQEAIKEIQ 996


>gi|57233929|ref|YP_181993.1| transcription-repair coupling factor [Dehalococcoides ethenogenes
           195]
 gi|57224377|gb|AAW39434.1| transcription-repair coupling factor [Dehalococcoides ethenogenes
           195]
          Length = 1148

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 140/456 (30%), Positives = 224/456 (49%), Gaps = 20/456 (4%)

Query: 212 PRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
           P         EW     +     E  A ++  +  ++  K   G P + +    Q++  +
Sbjct: 546 PPSLHRLGTQEWQRAKEKASESAEETARELLDIYAKR--KMASGYPFSTDTVWQQEMEAS 603

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            P+  T  Q  A+ DI  DM     M R++ GDVG GKT VA+ A   AV  G Q  ++ 
Sbjct: 604 FPYLETPDQLKALYDIKADMENPRPMDRLILGDVGYGKTEVAIRAAFKAVMDGKQVAVLV 663

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQHY   ++      + +E+++     + ++  +E +  G+  I IGTH L Q 
Sbjct: 664 PTTVLAQQHYTTFRERLATFPVKIEVLSRFCSPSEQKTTVENLERGEVDICIGTHRLIQA 723

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            I +  L LVI+DE+ RFGV  +    +      VL ++ATPIPRTL ++ +G  D+S I
Sbjct: 724 DITFKDLGLVIIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSLVGVRDMSII 783

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R PIKTV+   +    + E +   +    + +++  ++          + ER  
Sbjct: 784 ETPPGERLPIKTVVAAFDER-LIREAILREMERNGQVFFVNNRV-----MGINLLAERIQ 837

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L     + I I HG+M++    +VM  F      +L+ TT+IE G+DV +A+ +II  A
Sbjct: 838 QLVPE--ARIGIAHGQMAEEKLAAVMADFVRHELDVLVCTTIIESGVDVPNANTLIINRA 895

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL---KNTEDGFLIAEE 623
           + FGL QL+QLRGRVGR  +++    LY     L+ ++  RL  +        G+ IA +
Sbjct: 896 DRFGLTQLYQLRGRVGRSSQLAYAYFLYEKDKRLTSDAEKRLKTIYEAAELGAGYGIAMK 955

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           DL+ R  G +LG+KQSG    +     L+  +L  A
Sbjct: 956 DLEIRGAGTLLGVKQSGYINSVGFN--LYTQMLSEA 989


>gi|255014104|ref|ZP_05286230.1| putative transcription-repair coupling factor [Bacteroides sp.
           2_1_7]
          Length = 1120

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 144/450 (32%), Positives = 226/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        A  + +A  + LL  ++  K+E G     +  +  ++  +  +  T  Q  
Sbjct: 505 WEKMKERTKAKVKDIARDLILLYSKR--KQETGFAYTPDSFMQHELEASFIYEDTPDQMK 562

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI ++  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+
Sbjct: 563 AIAEVKADMESTRPMDRLICGDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQ 622

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++    ++ I+     A  +  L+ +  G+ +I+IGTH +    +++  L L+I
Sbjct: 623 TFCERLKDFPCKIDYISRARTAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLI 682

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S IT  P  R P++
Sbjct: 683 IDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQ 742

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  D + E +   +S   + ++I  +I+   E       E          + +A
Sbjct: 743 TEVERFN-PDIIREAINFEMSRNGQVFFINNRIQNIYEMETLVRREV-------PDARVA 794

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M     E ++  F N    +LIAT+++E GIDV +A+ III NA+ FGL+ LHQL
Sbjct: 795 VGHGQMEPEKLEKIILDFVNYEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQL 854

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR    + C LL  P   L++ +  RL  ++N      G  IA +DL  R  G +L
Sbjct: 855 RGRVGRSNRKAFCYLLSPPLTSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNML 914

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +LE A  + K
Sbjct: 915 GAEQSGFIADL--GYETYQKILEEAVDELK 942


>gi|209525598|ref|ZP_03274136.1| transcription-repair coupling factor [Arthrospira maxima CS-328]
 gi|209493931|gb|EDZ94248.1| transcription-repair coupling factor [Arthrospira maxima CS-328]
          Length = 1167

 Score =  346 bits (888), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 138/433 (31%), Positives = 231/433 (53%), Gaps = 19/433 (4%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  +  ++ G     +    Q++  + P+ PT  Q    +D+ +DM     M R++ G
Sbjct: 587  LKLYAERSQKTGFSYPQDTPWQQEMEDSFPYQPTPDQLKCSQDVKRDMESDRPMDRLVCG 646

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VA+ A+  AV AG Q   +AP  IL QQHY  +K+      I + ++     
Sbjct: 647  DVGFGKTEVAIRAIFKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYPIEIGLLNRFRS 706

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
             + ++   +++  G+  II+GTH++    I++  L L++VDE+ RFGV Q+ K+    T 
Sbjct: 707  ASEKKLIQQKLTTGEIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKALKTH 766

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL +TATPIPRTL +   G  ++S IT  P  R+PI+T + P+N+ + +   +   L 
Sbjct: 767  VDVLTLTATPIPRTLYMALSGIREMSLITTPPPSRRPIQTHLGPLNQ-ETIRAAICQELD 825

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             G + +++ P+IE  +E +               ++ +AI HG+M   + ES+M +F  G
Sbjct: 826  RGGQVFYVVPRIEGIEEKS-------AAIREMVPSARLAIAHGQMEAGELESIMLTFSAG 878

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY---- 596
               +L+ TT+IE G+D+   + I++E+A  FGL QL+QLRGRVGR    +   L Y    
Sbjct: 879  EADILVCTTIIESGLDIPRVNTILVEDAHKFGLGQLYQLRGRVGRAGVQAHAWLFYPVKG 938

Query: 597  --HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
                 L++++  RL  +K       G+ +A  DL+ R  G+ILG +QSG    +     L
Sbjct: 939  DGQAALTEDAVKRLRAIKEFTQLGSGYQLAMRDLEIRGAGDILGAQQSGQMNAIGFD--L 996

Query: 652  HDSLLEIARKDAK 664
            +  +L+ A ++ +
Sbjct: 997  YTEMLQEAIQEVR 1009


>gi|254444929|ref|ZP_05058405.1| transcription-repair coupling factor [Verrucomicrobiae bacterium
           DG1235]
 gi|198259237|gb|EDY83545.1| transcription-repair coupling factor [Verrucomicrobiae bacterium
           DG1235]
          Length = 1144

 Score =  346 bits (888), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 144/473 (30%), Positives = 237/473 (50%), Gaps = 20/473 (4%)

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL-MRKQFKKEIG 252
           LQ+    S     +    P+  K       ++ R A +       A LL ++ +     G
Sbjct: 507 LQESHLISRYVGISKT-RPKLGK-IGSNRWSKTREAAERSTLDLAAKLLELQAKRDTGGG 564

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
               ++ +   +   + PF  T  Q  AIK+   DM ++  M R++ GDVG GKT VA+ 
Sbjct: 565 HAFALDTEWQTEFEGSFPFKETPDQLKAIKESKGDMEKEIPMDRLICGDVGFGKTEVAIR 624

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           A   AV    Q  I+ P  +LAQQH+   +       I+VE ++     A  +K L+  A
Sbjct: 625 AAFKAVMDDKQVAILVPTTVLAQQHFLNFRDRMAGYPIVVETVSRFRKPAEVKKILQSTA 684

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            G+  I+IGTH + Q  + +  L LV++DE+ RFG++ +    +  +   +L M+ATPIP
Sbjct: 685 AGKVDILIGTHRILQKDVSFKDLGLVVIDEEQRFGIKHKEVFKEWRSTVDILTMSATPIP 744

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL +   G  ++S I   P  RKPI+T++   +    V E ++  ++ G + +++  ++
Sbjct: 745 RTLYMALTGARELSVIETAPVERKPIQTIVKSYDD-ALVSEVIRREIARGGQVFYLHNRV 803

Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +                L +     SI + HG+M +   E+VM  F N   ++L+ TT+I
Sbjct: 804 QTINT--------VAAKLEKMLPEVSIGVGHGQMDEKKLENVMLDFVNQKYQVLVCTTII 855

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLS 609
           E G+D+ + + IIIE A+ FGL+QL+QLRGRVGR +  +   LL   H  L   +  RL+
Sbjct: 856 ESGLDIPNCNTIIIEGADRFGLSQLYQLRGRVGRFKRQAYAYLLLHKHKRLMDVARKRLA 915

Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +++      GF +A  DL+ R  G +LG +QSG    +    EL+  LL+ +
Sbjct: 916 AIRHHNQLGAGFRLAMRDLELRGAGNLLGSEQSGHI--VGVGFELYCQLLKQS 966


>gi|325288390|ref|YP_004264571.1| transcription-repair coupling factor [Syntrophobotulus glycolicus DSM
            8271]
 gi|324963791|gb|ADY54570.1| transcription-repair coupling factor [Syntrophobotulus glycolicus DSM
            8271]
          Length = 1182

 Score =  346 bits (888), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 138/457 (30%), Positives = 235/457 (51%), Gaps = 17/457 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW        +  + +A  +  L  +++     G   + +    ++     P+  T  Q 
Sbjct: 574  EWNKAKSRVRSAVKEMAIDLIELYAKRES--SKGYVFSADNHWQKEFEDKFPYEETADQL 631

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I +DM +   M R+L GDVG GKT VA+ A   AV  G Q  I+ P  ILAQQHY
Sbjct: 632  QSIQEIKKDMMKSKVMDRLLCGDVGYGKTEVAMRAAFKAVADGKQVAILVPTTILAQQHY 691

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++   +  + +E+I+       +++ +  +  G   IIIGTH L  + I +  L L+
Sbjct: 692  TTFQERFMDYPVKIEMISRFRTAKEQKQIIRGLKDGTIDIIIGTHKLVSEGIDFKDLGLL 751

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV  + K+    T   VL ++ATPIPRTL ++ +G  D+S I+  P  R P+
Sbjct: 752  VVDEEQRFGVTHKEKIKALKTNVDVLTLSATPIPRTLQMSLVGLRDMSVISTPPDDRYPV 811

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T +   N  D V + ++  +  G + +++  +IE         V+    SL     +  
Sbjct: 812  QTFVAEFN-PDMVRDAVRREIHRGGQVFYVHNRIESLD-----RVLRMLKSLVPE--AKC 863

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             ++HG+M++   E+ M SF      +LI TT+IE G+D+ + + +I++ A+ FGL+QL+Q
Sbjct: 864  GVVHGQMNETQLENEMISFLEKEKDILICTTIIETGLDMANVNTLIVDEADRFGLSQLYQ 923

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +    LY P   L++ +  RLS ++       GF +A  DL+ R  G +
Sbjct: 924  LRGRVGRSNRKAYAYFLYQPSKILTEEAEKRLSTIREFTEFGSGFKVAMRDLEIRGAGSL 983

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            +G +Q G          L+  +L+ A ++ +   T++
Sbjct: 984  IGGEQHGH--LAAVGFNLYVRMLKEAIQELRGEETEE 1018


>gi|223940292|ref|ZP_03632150.1| transcription-repair coupling factor [bacterium Ellin514]
 gi|223891059|gb|EEF57562.1| transcription-repair coupling factor [bacterium Ellin514]
          Length = 1212

 Score =  346 bits (888), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 144/448 (32%), Positives = 226/448 (50%), Gaps = 17/448 (3%)

Query: 224  ARERLAYDELLAGQIAL--LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
              +  A  E     +A   L ++   + + G     +    ++      +  T+ Q  AI
Sbjct: 586  WAKAKAQAERAVRDVASELLAIQAARESQPGYSFKADTPWQREFESAFLYEETRDQMRAI 645

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
             +   DM +   M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY   
Sbjct: 646  NETKGDMERPKPMDRLICGDVGFGKTEVAIRAAFKAVMEGKQVAILVPTTVLAQQHYNTF 705

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            K+   +  + VE+++      +R++ +  +  G   I+IGTH L Q  I +  L LVI+D
Sbjct: 706  KERVADYPMRVELLSRFRSPKNRKRVISELPAGAVDIVIGTHRLIQSDINFKDLGLVIID 765

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+ RFGV  + K  Q      VL ++ATPIPRTL L   G  D+S I   P  R P++T+
Sbjct: 766  EEQRFGVLHKEKFKQIRKLVDVLTLSATPIPRTLYLALTGARDMSTIETPPQDRLPVETI 825

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            +   +    + E ++  L+ G + Y++  ++        +       +L  H  + I + 
Sbjct: 826  VAQYDER-LIREAIQRELNRGGQVYFLHNRVGTIDAMAQK-----LRTLVPH--ARIVVG 877

Query: 522  HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            HG+M   D E VM +F NG   +L++TT+IE G+D+ +A+ +II+ A+ FGL+ L+QLRG
Sbjct: 878  HGQMKPDDLEEVMTAFINGEADVLLSTTIIESGLDIPNANTMIIDRADRFGLSDLYQLRG 937

Query: 582  RVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEILGI 636
            RVGR +  +   LL   H  L  ++  R+S LK       GF IA  DL+ R  G +LG 
Sbjct: 938  RVGRYKHQAYAYLLLPRHAGLLADARKRISALKQYSTLGSGFKIAMRDLEIRGAGNMLGP 997

Query: 637  KQSGMPKFLIAQPELHDSLLEIARKDAK 664
            +QSG         +L+  LL+ +    K
Sbjct: 998  EQSGQIT--AVGFDLYCQLLKQSVAALK 1023


>gi|253698851|ref|YP_003020040.1| transcription-repair coupling factor [Geobacter sp. M21]
 gi|251773701|gb|ACT16282.1| transcription-repair coupling factor [Geobacter sp. M21]
          Length = 1157

 Score =  346 bits (887), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 142/456 (31%), Positives = 228/456 (50%), Gaps = 17/456 (3%)

Query: 212  PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
            PR  +         +  A  E+      LL +    + + G   +    + +    +  F
Sbjct: 559  PRLDRLGAAGWEKAKAKARAEVQEMAAELLKIHAAREVQQGFKFSPADDMYRAFEASFAF 618

Query: 272  SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
              T  Q +AI  ++ DM     M R++ GDVG GKT VA+ A   +   G Q  I+ P  
Sbjct: 619  EETPDQAAAIDQVIADMESPRPMDRLVCGDVGYGKTEVAMRAAFKSTLDGKQVAILVPTT 678

Query: 332  ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
            +LAQQH E      ++  + VE+++       +++ LE +  G+  I+IGTH L Q  + 
Sbjct: 679  VLAQQHAESFASRLKDYPVRVEMLSRFRTPQQQKQILEGVKKGEVDIVIGTHRLLQKDVV 738

Query: 392  YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
            +  L L+IVDE+ RFGV  + +L Q      +L +TATPIPRTL ++ +G  D+S I   
Sbjct: 739  FKDLGLLIVDEEQRFGVAHKERLKQFRAVVDILTLTATPIPRTLYMSLMGIRDLSIIDTP 798

Query: 452  PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            P  R  IKT +   +  + + E +   L  G + +++  +++                L 
Sbjct: 799  PVDRLAIKTFVSRSSD-ELIREAVLRELRRGGQVFFVHNRVQTIGAM--------AEELK 849

Query: 512  EHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                 + IA+ HG+M++ + E VM SF +G   LL+ TT+IE G+D+  A+ +I+  A+ 
Sbjct: 850  RIVPEAKIAVGHGQMAEKELEQVMLSFMHGETNLLLCTTIIESGLDIPTANTLIVNRADT 909

Query: 571  FGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDL 625
            FGL+QL+QLRGRVGR +  +   LL      +S  +  RL +L+   +   GF IA  DL
Sbjct: 910  FGLSQLYQLRGRVGRSKSRAYAYLLIPGEGAISPEARERLKILQELTELGAGFRIATHDL 969

Query: 626  KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            + R  G++LG +QSG         EL+  LL+ A +
Sbjct: 970  ELRGAGDLLGARQSG--DIAAVGFELYTELLDEAVR 1003


>gi|301793331|emb|CBW35690.1| putative putative transcription-repair coupling factor
           [Streptococcus pneumoniae INV104]
          Length = 1169

 Score =  346 bits (887), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|317970142|ref|ZP_07971532.1| transcription-repair coupling factor [Synechococcus sp. CB0205]
          Length = 1183

 Score =  346 bits (887), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 145/464 (31%), Positives = 234/464 (50%), Gaps = 20/464 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W             +A  +  L    +  K  G    V+G    ++  + P+ PT  Q  
Sbjct: 562  WNKAKERARKAVRKVALDLVKLYA--ERHKAPGFAFPVDGPWQNELEDSFPYEPTPDQVK 619

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI D+ +DM Q   M R++ GDVG GKT VA+ A+  AV AG Q  ++AP  +LAQQH+ 
Sbjct: 620  AIADVKRDMEQPQPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVAMLAPTTVLAQQHWR 679

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             + +      I V ++      + R+   E +  G   +++GTH L     Q+ +L L++
Sbjct: 680  SLSERFAPYPIKVSLLNRFRTSSERKVIQEGLGEGTVDVVVGTHQLLGKGTQFKELGLLV 739

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  ++S IT  P  R+PIK
Sbjct: 740  VDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIK 799

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T +  ++  + V   ++  L  G + +++ P++E  +        E    L +      +
Sbjct: 800  THLAALDE-EAVRSAIRQELDRGGQIFYVVPRVEGIE--------EVAEGLRQMIPGLRL 850

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++ + ES M +F  G   L++ TT++E G+D+   + I+IE+A  FGLAQL+Q
Sbjct: 851  LVAHGQMAEGELESAMVAFNAGEADLMLCTTIVESGLDIPRVNTILIEDAHKFGLAQLYQ 910

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L Y     LS  +  RL  ++       G+ +A  D++ R  G +
Sbjct: 911  LRGRVGRSGIQAHAWLFYPGDASLSDAARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNL 970

Query: 634  LGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHILTQDPDLT 674
            LG++QSG  + +        L +SL EI  +D   +     DL 
Sbjct: 971  LGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPAVDDTQIDLQ 1014


>gi|15899955|ref|NP_344559.1| transcription-repair coupling factor [Streptococcus pneumoniae
           TIGR4]
 gi|111658624|ref|ZP_01409274.1| hypothetical protein SpneT_02000214 [Streptococcus pneumoniae
           TIGR4]
 gi|14971470|gb|AAK74199.1| transcription-repair coupling factor [Streptococcus pneumoniae
           TIGR4]
          Length = 1169

 Score =  346 bits (887), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|332199073|gb|EGJ13154.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA47901]
          Length = 1169

 Score =  346 bits (887), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|309798694|ref|ZP_07692959.1| ATP-dependent DNA helicase RecG [Streptococcus infantis SK1302]
 gi|308117637|gb|EFO55048.1| ATP-dependent DNA helicase RecG [Streptococcus infantis SK1302]
          Length = 392

 Score =  346 bits (887), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 168/368 (45%), Positives = 252/368 (68%), Gaps = 5/368 (1%)

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           +PF+ T++QE ++++IL DM     M R+LQGDVGSGKT+VA +AM AAV AG QA +M 
Sbjct: 1   MPFALTQAQEKSLQEILTDMKSDQHMNRLLQGDVGSGKTVVAGLAMYAAVTAGYQAALMV 60

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+QH+E ++       + + ++TG++  A +R  LE IA G+  +I+GTHAL QD
Sbjct: 61  PTEILAEQHFESLESLF--PDLKLALLTGSLKAAEKRTVLETIAKGEVDVIVGTHALIQD 118

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++Y +L L+I+DEQHRFGV QR  L +K   P VL+MTATPIPRTL +T+ GD+D+S I
Sbjct: 119 GVEYARLGLIIIDEQHRFGVGQRRILREKGENPDVLMMTATPIPRTLAITAFGDMDVSII 178

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
            + PAGRKPI T  I   ++ +V+  L+  + +G +AY I P IEE +  + ++ +    
Sbjct: 179 DQMPAGRKPIVTRWIKHEQLPQVLTWLESEIQKGSQAYVISPLIEESEALDLKNAIALSE 238

Query: 509 SLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            L  HF   + +A++HG+M   +K+ +M  FK     +L++TTVIEVG++V +A+++II 
Sbjct: 239 ELTAHFAEKAKVALLHGKMKSDEKDQIMQEFKERKTDILVSTTVIEVGVNVPNATVMIIM 298

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           +A+ FGL+QLHQLRGRVGRG++ S  +L+ +P  + +   R+ ++  T +GF++AEEDLK
Sbjct: 299 DADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK-TDSGKDRMRIMTETTNGFVLAEEDLK 357

Query: 627 QRKEGEIL 634
            R  GEIL
Sbjct: 358 MRGSGEIL 365


>gi|15902050|ref|NP_357600.1| transcription-repair coupling factor [Streptococcus pneumoniae R6]
 gi|116516151|ref|YP_815427.1| transcription-repair coupling factor [Streptococcus pneumoniae D39]
 gi|15457534|gb|AAK98810.1| Transcription-repair coupling factor [Streptococcus pneumoniae R6]
 gi|116076727|gb|ABJ54447.1| transcription-repair coupling factor [Streptococcus pneumoniae D39]
          Length = 1169

 Score =  346 bits (887), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQGYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|256419455|ref|YP_003120108.1| transcription-repair coupling factor [Chitinophaga pinensis DSM
           2588]
 gi|256034363|gb|ACU57907.1| transcription-repair coupling factor [Chitinophaga pinensis DSM
           2588]
          Length = 1126

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 139/458 (30%), Positives = 228/458 (49%), Gaps = 18/458 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +     + +A  +  L   ++ +   G P + +  +  ++  +  +  T  Q  
Sbjct: 516 WDKLKEKAKTQVKDIAKDLIQLYAARKAQ--TGFPHSPDTYLQTELEASFLYEDTPDQSK 573

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+ +DM     M R++ GDVG GKT +A+ A   ++  G QA ++ P  ILA QHY+
Sbjct: 574 ATADVKRDMQSPAPMDRLVCGDVGFGKTEIAVRAAFKSIVDGKQAAVLVPTTILAFQHYK 633

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                 ++    V+ +        +++ L+R+A G+  IIIGTHAL    +++  L +++
Sbjct: 634 TFSDRLKDFPCTVDYLNRFKSAKEKKETLQRLAEGKIDIIIGTHALLSKDVKFKDLGVMV 693

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL Q       L +TATPIPRTL  + +G  D+S I   P  R+PI+
Sbjct: 694 VDEEQKFGVAAKEKLKQLKINVDTLTLTATPIPRTLQFSLMGARDLSVINTPPPNRQPIE 753

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +  D + + +      G + Y++  +++   E +          L      SIA
Sbjct: 754 TEVHVFDH-DLIRDAIYYETERGGQVYFVYNRVKGLGEMSS-----LIKGLCPDL--SIA 805

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG+M     E V+  F +    +L+ T ++E G+D+ +A+ III NA HFGL+ LHQL
Sbjct: 806 TAHGQMEGHQLEEVILDFIDRKYDVLVCTNIVESGVDIPNANTIIINNAHHFGLSDLHQL 865

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L  +S  RL  L+       GF IA  DL  R  G +L
Sbjct: 866 RGRVGRSNKKAFCYLLAPPISTLPGDSRKRLQTLEQHSELGSGFQIAMRDLDIRGAGNLL 925

Query: 635 GIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQ 669
           G +QSG      F + Q  L +++ E+ + + + +   
Sbjct: 926 GGEQSGFMAEIGFDMYQKILDEAIRELKQNEFRDLFKD 963


>gi|225857815|ref|YP_002739325.1| transcription-repair coupling factor [Streptococcus pneumoniae
           70585]
 gi|225720446|gb|ACO16300.1| transcription-repair coupling factor [Streptococcus pneumoniae
           70585]
          Length = 1169

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|108801209|ref|YP_641406.1| transcription-repair coupling factor [Mycobacterium sp. MCS]
 gi|119870360|ref|YP_940312.1| transcription-repair coupling factor [Mycobacterium sp. KMS]
 gi|108771628|gb|ABG10350.1| transcription-repair coupling factor [Mycobacterium sp. MCS]
 gi|119696449|gb|ABL93522.1| transcription-repair coupling factor [Mycobacterium sp. KMS]
          Length = 1211

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 228/449 (50%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +A ++  L  ++Q     G   + +     ++     F+ T  Q 
Sbjct: 591  DWANTKTKARRAVREIASELVALYAKRQAA--PGHAFSPDTPWQNEMEDAFGFTETVDQL 648

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 649  TAIEEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 708

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +          + V+ ++     A  R ALE +  G   I+IGTH L Q  + +  L L+
Sbjct: 709  QTFTARMAGFPVTVKGLSRFTDPAESRAALEGMKDGSVDIVIGTHRLLQTGVVWKDLGLI 768

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 769  IVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 828

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   L+  L    +A++I  ++    ++  +       +L     + +
Sbjct: 829  LTYVGPQDD-KQVAAALRRELLRDGQAFYIHNRVRTIDQAASK-----IAALVPE--ARV 880

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E  ++ F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 881  VVAHGQMPEELLERTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 940

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 941  LRGRVGRSRERGYAYFLYPPEQPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNV 1000

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +QSG         +L+  L+  A + 
Sbjct: 1001 LGAEQSGH--VAGVGFDLYVRLVGEAVEA 1027


>gi|255536470|ref|YP_003096841.1| Transcription-repair coupling factor [Flavobacteriaceae bacterium
           3519-10]
 gi|255342666|gb|ACU08779.1| Transcription-repair coupling factor [Flavobacteriaceae bacterium
           3519-10]
          Length = 1138

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 135/477 (28%), Positives = 233/477 (48%), Gaps = 23/477 (4%)

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
           + K + P   E         K     W +  ++  A  + +A  +  L  ++  K   G 
Sbjct: 505 ISKYNGPDGREIVL-----SKLGSPAWKTLKQKTKAKVKQIAFDLIRLYAKR--KTAKGF 557

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
               +  +  ++  +  +  T  QE A  D+  DM ++  M R++ GDVG GKT +A+ A
Sbjct: 558 AFTPDSYLQNELEASFIYEDTPDQEKATLDVKTDMEKETVMDRLICGDVGFGKTEIAVRA 617

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
              A   G Q  I+ P  ILA QHY   K+  ++  + +  +        + + L+ +A 
Sbjct: 618 AFKAATDGKQVAILVPTTILAFQHYRSFKERLKDFPVNISYMNRFRTAKQKSETLKGLAE 677

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G+  I+IGTH L   ++++  L L+I+DE+H+FGV  + KL         L +TATPIPR
Sbjct: 678 GKIDIVIGTHQLVSSTVKFKDLGLLIIDEEHKFGVAVKDKLKTLKNNIDTLTLTATPIPR 737

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL  + +   D+S I   P  R+P++T I+  +  + + + +   +    + Y+I  +IE
Sbjct: 738 TLQFSLMAARDLSVIKTPPPNRQPVETSIVGFSE-EIIRDAISYEIQRDGQVYFINNRIE 796

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             K+            L     + +   HG+M     E  +  F  G   +L++TT++E 
Sbjct: 797 NLKDIAG-----LIQRLVPD--AKVITGHGQMEGKQLERNVLDFMEGKYDVLVSTTIVES 849

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL 611
           G+DV +A+ + I +A+ FG+A LHQ+RGRVGR    + C L+  P   ++ ++  RL  +
Sbjct: 850 GVDVPNANTMFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPFDMMTSDARKRLEAI 909

Query: 612 KNTED---GFLIAEEDLKQRKEGEILGIKQSGM---PKFLIAQPELHDSLLEIARKD 662
           +   D   GF IA +DL+ R  G++LG +QSG      F   Q  + ++L E+   +
Sbjct: 910 EQFSDLGSGFQIAMKDLEIRGAGDLLGGEQSGFINEMGFDTYQKIMQEALEELQNDE 966


>gi|221230954|ref|YP_002510106.1| transcription-repair coupling factor [Streptococcus pneumoniae ATCC
           700669]
 gi|225853617|ref|YP_002735129.1| transcription-repair coupling factor [Streptococcus pneumoniae JJA]
 gi|220673414|emb|CAR67872.1| putative putative transcription-repair coupling factor
           [Streptococcus pneumoniae ATCC 700669]
 gi|225722629|gb|ACO18482.1| transcription-repair coupling factor [Streptococcus pneumoniae JJA]
          Length = 1169

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|169833013|ref|YP_001693440.1| transcription-repair coupling factor [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168995515|gb|ACA36127.1| transcription-repair coupling factor [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 1169

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQGYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|126437189|ref|YP_001072880.1| transcription-repair coupling factor [Mycobacterium sp. JLS]
 gi|126236989|gb|ABO00390.1| transcription-repair coupling factor [Mycobacterium sp. JLS]
          Length = 1211

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 228/449 (50%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +A ++  L  ++Q     G   + +     ++     F+ T  Q 
Sbjct: 591  DWANTKTKARRAVREIASELVALYAKRQAA--PGHAFSPDTPWQNEMEDAFGFTETVDQL 648

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 649  TAIEEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 708

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +          + V+ ++     A  R ALE +  G   I+IGTH L Q  + +  L L+
Sbjct: 709  QTFTARMAGFPVTVKGLSRFTDPAESRAALEGMKDGSVDIVIGTHRLLQTGVVWKDLGLI 768

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 769  IVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 828

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   L+  L    +A++I  ++    ++  +       +L     + +
Sbjct: 829  LTYVGPQDD-KQVAAALRRELLRDGQAFYIHNRVRTIDQAASK-----IAALVPE--ARV 880

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E  ++ F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 881  VVAHGQMPEELLERTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 940

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 941  LRGRVGRSRERGYAYFLYPPEQPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNV 1000

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +QSG         +L+  L+  A + 
Sbjct: 1001 LGAEQSGH--VAGVGFDLYVRLVGEAVEA 1027


>gi|303231983|ref|ZP_07318691.1| transcription-repair coupling factor [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513412|gb|EFL55446.1| transcription-repair coupling factor [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 1096

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 147/581 (25%), Positives = 272/581 (46%), Gaps = 44/581 (7%)

Query: 106 FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN----SQDVNFPLIEAVYS 161
           + ++   L+N   +G++I              +    Y+ H+     + V    IE    
Sbjct: 402 YGQQKRKLRNKPKKGQEI---------NYFTDLSVGDYVVHSMHGIGKYVGLKTIE---- 448

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
              G+     +  I  A +    L  ++    L +       E    +    K    +W 
Sbjct: 449 -TEGIH----RDYIEIAYAGTDRL--YLPASNLDQLQKYIGNE--GDVPRIHKMGGSDWR 499

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
               +     + LA ++  L  +++     G     +    Q+     P+  T+ Q  A 
Sbjct: 500 KAVTKTQKSIDDLADKLVELYAKRE--ITEGFAFLPDQPWQQEFEDAFPYEETEDQLQAT 557

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           ++I + M +   M R+L GDVG GKT VA+ A+  AV +G Q  ++ P  +LAQQHY+  
Sbjct: 558 REIKESMERPTPMDRLLAGDVGFGKTEVAMRAIFKAVVSGKQVAVLVPTTVLAQQHYQTF 617

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
                   + V+++      A +++ L+ I +G   I+IGTH+L    +++  L  ++VD
Sbjct: 618 LNRFNPFGVKVDVLNRFRSTAEKKEVLKGIENGSIDILIGTHSLLNKKVKFKDLGFLVVD 677

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+ RFGV Q+ K  + A    VL ++ATPIPRTL ++ +G  ++S I+  P  R P++T 
Sbjct: 678 EEQRFGVAQKEKWKEWANNIDVLTLSATPIPRTLHMSLVGVREMSVISTPPEDRLPVQTY 737

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           ++  + ++ + + +K  ++ G + Y++  ++          + E           ++A  
Sbjct: 738 VVEYD-MNLIADAIKREIARGGQVYFVYNRVASIN-----HMGELLEQALPDLRYAVA-- 789

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M+    E +M  F  G   +L++T++IE G+D+ +A+ III +A+  GL+QL+Q+RG
Sbjct: 790 HGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQLYQMRG 849

Query: 582 RVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636
           RVGR    +    +Y P   LS+ +  RL  ++   +   GF +A  DL+ R  G +LG 
Sbjct: 850 RVGRSRRRAYAYFMYRPDKMLSEAAEKRLKAIEEFTELGAGFKLAMRDLEIRGAGNLLGS 909

Query: 637 KQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           +Q G      F +    L +++ +   K+    +  DP + 
Sbjct: 910 QQHGNIASVGFGMYVSMLEEAIAKAQNKEVVKEVVPDPAID 950


>gi|308271395|emb|CBX28003.1| hypothetical protein N47_G33270 [uncultured Desulfobacterium sp.]
          Length = 1171

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 150/446 (33%), Positives = 222/446 (49%), Gaps = 19/446 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W           E +AG++  L   +  K   G          +       +  T  Q S
Sbjct: 577  WDRVKERAKKSAEKIAGELLKLYATR--KVNEGFAHKKPDSYFKDFEAEFSYEETPDQLS 634

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI D++ DM     M R++ GDVG GKT VAL A   A+    Q  ++ P  +LA+QH+ 
Sbjct: 635  AIDDVMSDMENNTPMDRLVCGDVGYGKTEVALRASFLAINCAKQVAVLVPTTVLAEQHFS 694

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K   +   + +E ++       +++ +  I+ G+A I+IGTH L Q  + +  L L++
Sbjct: 695  TFKARFEKYPVNIECLSRFRSIKEQKRIISDISSGKADIVIGTHRLLQKDVIFKDLGLIV 754

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+ + KL +      VL +TATPIPRTL ++  G  DIS I+  P  R+ I 
Sbjct: 755  LDEEHRFGVKHKEKLKKLRNNVDVLALTATPIPRTLHMSLTGIRDISVISTPPEHRQSII 814

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T +   +    + E ++  L+   + Y++   I    +          N LHE      I
Sbjct: 815  TYVSEFDE-ALIAEAVRKELARKGQIYFVHNNIFTIDKI--------ANKLHELIPEIKI 865

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HGR+S+ + ESVM  F N    +L+ TT+IE G+D+  A+ III  A+ FGLAQ++Q
Sbjct: 866  GIGHGRLSENELESVMLKFVNKDIDMLVCTTIIESGLDIPSANTIIINRADRFGLAQIYQ 925

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR +E +   L       L K++  RL VL    D   GF IA  DL+ R  G I
Sbjct: 926  LRGRVGRSDEQAYAYLFIPKDSILGKDAQKRLKVLMEHSDLGSGFQIAMSDLRIRGGGTI 985

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG  QSG    +    E+   L+E A
Sbjct: 986  LGASQSGHIAAI--GYEMFLKLMEEA 1009


>gi|254422402|ref|ZP_05036120.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335]
 gi|196189891|gb|EDX84855.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335]
          Length = 1177

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 144/460 (31%), Positives = 239/460 (51%), Gaps = 19/460 (4%)

Query: 222  SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            +  + R A  ++    + L   R Q +         +    Q++  + P++PT  Q  A 
Sbjct: 581  TKGKARKAIKKVAVDLLKLYAQRSQMQGFTY---PEDMPWQQELEDSFPYNPTPDQLKAT 637

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +D+ +DM     M R++ GDVG GKT VAL A+  AV AG Q  ++AP  IL QQHY  +
Sbjct: 638  QDVKRDMESDRPMDRLVCGDVGFGKTEVALRAVFKAVTAGKQVALLAPTTILTQQHYHTL 697

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            K+      I + ++        R+  L R+  G+  +++GTH L   ++++  L L++VD
Sbjct: 698  KERFAPYPIQIGLLNRFRTAKERKDILLRLISGELDVVVGTHQLLGKTVKFKDLGLLVVD 757

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+ RFGV Q+ K+        VL ++ATPIPRTL +   G  ++S IT  P  R+PIKT 
Sbjct: 758  EEQRFGVNQKEKIKAMKAQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTH 817

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            + P +  ++V   ++  L  G + +++ P++E  +E   R                +AI 
Sbjct: 818  LSPYD-PEKVRTAIRQELDRGGQIFYVVPRVEGIEEVAGRIREAV-------PGVRLAIA 869

Query: 522  HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            HG+M + + E+ M +F NG   L++ TT+IE G+D+   + IIIE+++ FGL+QL+QLRG
Sbjct: 870  HGQMPEGELEATMLTFSNGDADLMVCTTIIESGLDIPRVNTIIIEDSQKFGLSQLYQLRG 929

Query: 582  RVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGI 636
            RVGR    +   LL+     LS  +  RL  ++       G+ +A  D++ R  G +LG 
Sbjct: 930  RVGRSGIQAHAWLLFPKQNQLSDKARKRLRAIQEFTQLGSGYQLAMRDMEIRGIGNLLGA 989

Query: 637  KQSGMPKFLIAQPELH---DSLLEIARKDAKHILTQDPDL 673
            +QSG  + +     +    +S+ EI  ++   +     DL
Sbjct: 990  QQSGQMEVIGFDLYMDMLEESIAEIRGQEIPQVDETQVDL 1029


>gi|74317674|ref|YP_315414.1| transcription-repair coupling factor [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057169|gb|AAZ97609.1| transcription-repair coupling factor [Thiobacillus denitrificans
           ATCC 25259]
          Length = 1146

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 147/474 (31%), Positives = 230/474 (48%), Gaps = 19/474 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W    R  +      A ++  L   +  ++      ++     +       +  T  Q 
Sbjct: 538 QWEKARRRAMQAARDTAAELLNLYALRAAREGHAFSFSLHD--YEAFAEGFGYEETPDQA 595

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI  ++ DM     M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH+
Sbjct: 596 AAIAAVMADMQSGKPMDRLVCGDVGFGKTEVALRAAFMAVMGGYQVAVLVPTTLLAEQHF 655

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                      + +  ++       +  ALE +  G+  I+IGTH L Q  +++ +L LV
Sbjct: 656 NNFSDRFSQWPVKLAELSRFRTAKEQAAALEALKDGRIDIVIGTHRLIQKDVKFARLGLV 715

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV+Q+ +L        VL +TATPIPRTL ++  G  D S I   P  R  +
Sbjct: 716 ILDEEHRFGVRQKEQLKALRAEVDVLTLTATPIPRTLAMSLEGIRDFSVIATAPQKRLAV 775

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           KT +   +    + E +   L  G + Y++  ++        +++ ER   L     + I
Sbjct: 776 KTFVRSFSG-GLIREAVLRELKRGGQVYFLHNEVSTI-----QNMRERLEKLLPE--ARI 827

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+MS+ + E VM  F      +L+ TT+IE GID+  A+ I+I  A+ FGLAQLHQ
Sbjct: 828 RVGHGQMSERELEQVMRDFYQQRYDILLCTTIIETGIDIPTANTILINRADKFGLAQLHQ 887

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
           LRGRVGR    +   LL      L+  +  RL     ++    GF +A  DL+ R  GE+
Sbjct: 888 LRGRVGRSHHQAFAYLLVEEDRTLTPQAKKRLEAIQLMEELGSGFHLARHDLEIRGAGEV 947

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           LG KQSG  + L     L++ +L  A    K    ++PD++        I L+L
Sbjct: 948 LGEKQSG--EILEVGFSLYNDMLAGAVASLKA--GKEPDMSQPLDVVSEINLHL 997


>gi|154503862|ref|ZP_02040922.1| hypothetical protein RUMGNA_01688 [Ruminococcus gnavus ATCC 29149]
 gi|153795461|gb|EDN77881.1| hypothetical protein RUMGNA_01688 [Ruminococcus gnavus ATCC 29149]
          Length = 1121

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 172/655 (26%), Positives = 301/655 (45%), Gaps = 65/655 (9%)

Query: 23  YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF 82
            +  L++ +   + +     D+         DR       E+    I+   G+++Q   +
Sbjct: 362 RAKRLAEDLRDYDLSSFYSEDM---------DR-------EVQPGEIMVAYGHVTQGYEY 405

Query: 83  QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142
            +      K ++   T       F R+ +  +   +EG+KI    ++K            
Sbjct: 406 PM-----LKFMVISETDI-----FGRQKKKKRRKLYEGQKIQSFSELKVG---------D 446

Query: 143 YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSI 202
           Y+ H +      + + +  +        + KI     S L +L   +  DL+QK      
Sbjct: 447 YVVHENH--GLGIYQGIEKIEVDKITKDYMKISYAGGSSLYILATQL--DLIQKY----- 497

Query: 203 AEAFNIIHNPRKAK--DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260
             A      P+  K    +WT    +       +A  +  L   +Q +         +  
Sbjct: 498 --AGADAKKPKLNKLGSNQWTKTKNQVRGAVRQIARDLVELYAARQQENGYQY--EPDTV 553

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
             ++     PF  T  Q  AI D  QDM  K  M R++ GDVG GKT +A+ A   A++ 
Sbjct: 554 WQKEFEEMFPFEETDDQLQAIADTKQDMESKKIMDRLICGDVGYGKTEIAIRAAFKAIQD 613

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q V + P  ILAQQHY    +  +   + V+++      A ++K  E +  G   I+I
Sbjct: 614 GKQVVYLVPTTILAQQHYNTFVQRMKEFPVRVDLLCRFRTPAQQKKTTEDLKKGLVDILI 673

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTH +    +++  L L+I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ +
Sbjct: 674 GTHRVLSKDVEFKDLGLLIIDEEQRFGVTHKEKIKKLRENVDVLTLTATPIPRTLHMSLI 733

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           G  D+S + E P  R PI+T ++  N  + V E ++  L    + Y++  ++ +  E   
Sbjct: 734 GIRDMSVLEEAPMDRMPIQTYVMEYND-EMVREAIQRELDRDGQVYYVYNRVSDIAE--- 789

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             + +    L     +++A  HG+M++ + E++M  F NG   +L++TT+IE G+D+ +A
Sbjct: 790 --IADHVQKLVPD--ATVAFAHGQMAEHELENIMYDFINGDIDVLVSTTIIETGLDISNA 845

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED-- 616
           + +II +A+  GL+Q++QLRGRVGR   ++   LLY     L + +  RL+ ++   D  
Sbjct: 846 NTMIIHDADRLGLSQMYQLRGRVGRSNRMAYAFLLYRRDKLLKEVAEKRLAAIREFTDLG 905

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            GF IA  DL+ R  G +LG +Q G  + +     L+  +L  A K  K    ++
Sbjct: 906 SGFKIAMRDLEIRGAGNLLGAEQHGHMEAVGYD--LYCKMLNEAVKQLKGGTEEE 958


>gi|149007710|ref|ZP_01831319.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP18-BS74]
 gi|307126180|ref|YP_003878211.1| transcription-repair coupling factor [Streptococcus pneumoniae
           670-6B]
 gi|147760705|gb|EDK67677.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP18-BS74]
 gi|306483242|gb|ADM90111.1| transcription-repair coupling factor [Streptococcus pneumoniae
           670-6B]
          Length = 1169

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|240144343|ref|ZP_04742944.1| transcription-repair coupling factor [Roseburia intestinalis L1-82]
 gi|257203687|gb|EEV01972.1| transcription-repair coupling factor [Roseburia intestinalis L1-82]
          Length = 1176

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 146/453 (32%), Positives = 240/453 (52%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     + +A  +  L  ++Q ++        +    ++     PF  T+ QE
Sbjct: 575  EWNKTKTKVRGAVKEIAQDLVKLYAQRQDQEG--FVYGPDTVWQREFEEMFPFEETEDQE 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+   +DM     M R++ GDVG GKT +A+ A   AV+ G Q   + P  ILAQQHY
Sbjct: 633  LAIEATKKDMESTKIMDRLICGDVGYGKTEIAIRAAFKAVQDGKQVAFLVPTTILAQQHY 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  ++  + ++++      A ++K +E +  G   IIIGTH L    + Y  L L+
Sbjct: 693  NNFVQRMKDFPVNIDLLCRFRSSAEQKKTVEALKKGSVDIIIGTHRLLSKDVVYKDLGLL 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  D+S + E P  R PI
Sbjct: 753  IIDEEQRFGVTHKEKIKQLKTNIDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPMDRVPI 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + V E +   +S G +AY++  ++ E  +     V  +   L     +++
Sbjct: 813  QTYVMEYNE-ELVREAISREISRGGQAYYVYNRVREIAD-----VAAKIAELVPE--ANV 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M + + E++M  F NG   +L++TT+IE G+D+ + + +II +A++ GL+QL+Q
Sbjct: 865  AYAHGQMKETELENIMYRFINGEIDVLVSTTIIETGLDISNVNTMIIHDADNMGLSQLYQ 924

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L+Y     L + +  RL+ +K       GF IA  DL+ R  G +
Sbjct: 925  LRGRVGRSNRTAYAFLMYRRDKMLKEIAEKRLAAIKEYTELGSGFKIAMRDLEIRGAGNL 984

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G  + +     L+  +L  A K+AK +
Sbjct: 985  LGAEQHGHMEAVGYD--LYCKMLNEAVKEAKGM 1015


>gi|168491776|ref|ZP_02715919.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC0288-04]
 gi|183573939|gb|EDT94467.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC0288-04]
          Length = 1169

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 150/452 (33%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    I + 
Sbjct: 674 AQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDIVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQGYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|291535574|emb|CBL08686.1| transcription-repair coupling factor [Roseburia intestinalis M50/1]
          Length = 1176

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 147/453 (32%), Positives = 240/453 (52%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     + +A  +  L  ++Q ++        +    ++     PF  T+ QE
Sbjct: 575  EWNKTKTKVRGAVKEIAQDLVKLYAQRQDQEG--FVYGPDTVWQREFEEMFPFEETEDQE 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+   +DM     M R++ GDVG GKT +A+ A   AV+ G Q   + P  ILAQQHY
Sbjct: 633  LAIEATKKDMESTKIMDRLICGDVGYGKTEIAIRAAFKAVQDGKQVAFLVPTTILAQQHY 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  ++  + ++++      A ++K +E +  G   IIIGTH L    + Y  L L+
Sbjct: 693  NNFVQRMKDFPVNIDLLCRFRSSAEQKKTVEALKKGSVDIIIGTHRLLSKDVVYKDLGLL 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  D+S + E P  R PI
Sbjct: 753  IIDEEQRFGVTHKEKIKQLKTNIDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPMDRVPI 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + V E +   LS G +AY++  ++ E  +     V  +   L     +++
Sbjct: 813  QTYVMEYNE-ELVREAISRELSRGGQAYYVYNRVREIAD-----VAAKIAELVPE--ANV 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M + + E++M  F NG   +L++TT+IE G+D+ + + +II +A++ GL+QL+Q
Sbjct: 865  AYAHGQMKETELENIMYRFINGEIDVLVSTTIIETGLDISNVNTMIIHDADNMGLSQLYQ 924

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L+Y     L + +  RL+ +K       GF IA  DL+ R  G +
Sbjct: 925  LRGRVGRSNRTAYAFLMYRRDKMLKEIAEKRLAAIKEYTELGSGFKIAMRDLEIRGAGNL 984

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +Q G  + +     L+  +L  A K+AK +
Sbjct: 985  LGAEQHGHMEAVGYD--LYCKMLNEAVKEAKGM 1015


>gi|148993579|ref|ZP_01823050.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP9-BS68]
 gi|168489341|ref|ZP_02713540.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP195]
 gi|147927800|gb|EDK78822.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572243|gb|EDT92771.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP195]
 gi|332071709|gb|EGI82202.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA17570]
          Length = 1174

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|87302159|ref|ZP_01084984.1| transcription-repair coupling factor [Synechococcus sp. WH 5701]
 gi|87283084|gb|EAQ75040.1| transcription-repair coupling factor [Synechococcus sp. WH 5701]
          Length = 1187

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 145/462 (31%), Positives = 238/462 (51%), Gaps = 21/462 (4%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
             +  R R A  ++    + L   R+Q     G P   +G    ++  + P+ PT  Q  A
Sbjct: 568  RAKERARKAVRKVAMDLVKLYAERQQA---AGFPFPADGPWQGELEDSFPYEPTPDQVKA 624

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            I ++ +DM +   M R++ GDVG GKT VA+ A+  AV AG Q  ++AP  +LAQQH+  
Sbjct: 625  IAEVKRDMEKPEPMDRLVCGDVGFGKTEVAIRAVFKAVTAGKQCALLAPTTVLAQQHWRT 684

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            + +      + V ++      A R+  L+ +  G   +++GTH L      + KL L++V
Sbjct: 685  LSERFAPYPLKVALLNRFRTTAERKTILDGLRDGTVDVVVGTHQLLSKGTSFEKLGLLVV 744

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  ++S IT  P  R+PIKT
Sbjct: 745  DEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKT 804

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519
             +  ++  + V   ++  L  G + +++ P++E  +        E    L E      + 
Sbjct: 805  HLAALDE-EAVRSAIRQELDRGGQVFYVVPRVEGIE--------EVAGQLREMLPGLKLL 855

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + ES M +F  G   +++ TT+IE G+D+   + I++E+A  FGLAQL+QL
Sbjct: 856  VAHGQMGEGELESAMVAFNAGEADVMLCTTIIESGLDIPRVNTILVEDAHKFGLAQLYQL 915

Query: 580  RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   L Y     LS+ +  RL  ++       G+ +A  D++ R  G +L
Sbjct: 916  RGRVGRSGVQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNLL 975

Query: 635  GIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHILTQDPDL 673
            G++QSG  + +        L +SL EI  +D   +     DL
Sbjct: 976  GVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPVVEETQIDL 1017


>gi|289523176|ref|ZP_06440030.1| transcription-repair coupling factor [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503719|gb|EFD24883.1| transcription-repair coupling factor [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 1049

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 155/451 (34%), Positives = 237/451 (52%), Gaps = 19/451 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    +      + +A  +  L   ++ K   G P   +G +++   +  P+  T  Q  
Sbjct: 461 WKKNLQRAKEKAQKVAADLVSLYALRELK--KGFPFPKDGDMSRHFEKTFPYKETSDQLK 518

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI++I +DM +   M R+L GDVG GKT VAL A   AVE G Q  ++ P  +LA+QHYE
Sbjct: 519 AIEEIKRDMEKPVPMDRVLVGDVGFGKTEVALRAAIKAVEGGKQVAVLVPTTLLAEQHYE 578

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  +  I VE ++    QA +R  LE    G   I+IGTH L Q  +Q+  L LVI
Sbjct: 579 NFIARIGDMPIRVEQLSRFEGQAKQRLILEDTKKGLVDILIGTHRLLQRDVQFKDLGLVI 638

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV+Q+  L +      VL ++ATPIPRTL +   G  DIS +   P  R+P+ 
Sbjct: 639 IDEEHRFGVKQKELLKKLRAEVDVLSISATPIPRTLYMALSGIRDISLLCTPPKERQPVI 698

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSI 518
           TV+ P      V E +   +S G + +++  +I        + + +R  SL +    + +
Sbjct: 699 TVVGPWGD-SLVREAIVREISRGGQVFFVYDRI--------KGIEKRAQSLKKLVPEAKV 749

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            IIHG++     E  M  F  G   +L+ TT++E G+D+  A+ +I++NA  FGL+QLHQ
Sbjct: 750 GIIHGQLPKNVLERTMIKFLRGDINVLVCTTIVESGLDIARANTLIVDNAHMFGLSQLHQ 809

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGR    +   +LY     L+K +  RL  +        G+++A  DL+ R  G +
Sbjct: 810 LRGRVGRRSRQAFAYMLYPSDKVLTKEAMQRLEAISECNQLGGGYMLALRDLEIRGGGNL 869

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LGI+Q G  + +  Q  L+  L+E A K+ K
Sbjct: 870 LGIEQHGHVEKIGFQ--LYYKLIEDAMKNLK 898


>gi|312131279|ref|YP_003998619.1| transcriptioN-repair coupling factor [Leadbetterella byssophila DSM
           17132]
 gi|311907825|gb|ADQ18266.1| transcription-repair coupling factor [Leadbetterella byssophila DSM
           17132]
          Length = 1113

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 128/454 (28%), Positives = 223/454 (49%), Gaps = 21/454 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW     +     + +A ++  L  +++     G   + +  +  ++  +  +  T  Q 
Sbjct: 503 EWEVRKSKVKKQVKDIAKELIALYAKRREA--PGFAFSPDNYLQIELESSFMYEDTPDQA 560

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +A   +  DM +   M R++ GDVG GKT VA+ A   A   G Q  ++ P  ILA QH+
Sbjct: 561 AATAKVKADMEKPYPMDRLVCGDVGFGKTEVAIRAAFKAAVDGKQVAVLVPTTILALQHF 620

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +   N  + V+ +          K L+ +  G+  I+IGT  L   S+Q+  L L+
Sbjct: 621 RTFSERLSNMPVTVDYLNRFKTTKDTNKTLKDVKEGKVDILIGTQKLLSKSLQFKDLGLL 680

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ +FGV+ + ++ +      VL +TATPIPRTL  + +G  D+S I   P  R+ +
Sbjct: 681 IIDEEQKFGVKAKDRIKELKLNVDVLTLTATPIPRTLHFSLMGARDLSVIATPPPTRQTV 740

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TS 516
           +T +    + + + + +   L+ G + +++  ++ +          +R  ++       +
Sbjct: 741 ETRVETF-KEEIIRDAITYELNRGGQVFFVHNRVGDI---------DRIANIIYRLVPEA 790

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I + HG+M     E VM  F      +LI+T +IE G+D+ +A+ III  A  FGL+ L
Sbjct: 791 KIGVAHGQMEGEKLEKVMIRFIENETNILISTNIIESGLDIPNANTIIINQAHMFGLSDL 850

Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           HQ+RGRVGR  + + C LL  P   L+ ++  R+  ++      DGF +A  DL  R  G
Sbjct: 851 HQMRGRVGRSNKKAFCYLLTPPLSSLTTDARKRMQTIEQFSDLGDGFKVAMRDLDIRGAG 910

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            +LG +QSG    L    E++  +L+ A  + K 
Sbjct: 911 NLLGAEQSGFINDL--GYEMYHKILDEAVSELKE 942


>gi|225860052|ref|YP_002741561.1| transcription-repair coupling factor [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229483|ref|ZP_06963164.1| transcription-repair coupling factor [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255135|ref|ZP_06978721.1| transcription-repair coupling factor [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298501796|ref|YP_003723736.1| transcription-repair coupling factor [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727732|gb|ACO23583.1| transcription-repair coupling factor [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237391|gb|ADI68522.1| transcription-repair coupling factor [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327388991|gb|EGE87339.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA04375]
          Length = 1169

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|71275507|ref|ZP_00651793.1| Transcription-repair coupling factor [Xylella fastidiosa Dixon]
 gi|71900755|ref|ZP_00682876.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
 gi|170729284|ref|YP_001774717.1| transcription-repair coupling factor [Xylella fastidiosa M12]
 gi|71163807|gb|EAO13523.1| Transcription-repair coupling factor [Xylella fastidiosa Dixon]
 gi|71729485|gb|EAO31595.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
 gi|167964077|gb|ACA11087.1| transcription-repair coupling factor [Xylella fastidiosa M12]
          Length = 1193

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 151/488 (30%), Positives = 243/488 (49%), Gaps = 20/488 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +W+   R+       +A ++  +  R+Q +   G
Sbjct: 571  VAQLHLISRYSGASPETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQAR--AG 628

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + ++  + +      PF  T  Q +AI+  L+D+     M R++ GDVG GKT VA+ 
Sbjct: 629  LALRIDRTMYEPFAAGFPFEETPDQLAAIETTLRDLQSSQPMDRVVCGDVGFGKTEVAVR 688

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  I VE+++        +  L++++
Sbjct: 689  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPIRVEVLSRFKSTKEIKAELQKVS 748

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +I+GTH L Q  +++  L LVIVDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 749  EGTMDVIVGTHRLLQPDVKFKDLGLVIVDEEQRFGVRQKEALKSLRANVHLLTLTATPIP 808

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I P +    + E  +  L+ G + Y++   +
Sbjct: 809  RTLNMAMAGLRDLSIIATPPLNRLAVQTFITPWDN-ALLHEAFQRELARGGQLYFLHNDV 867

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +      L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 868  ESIG-----RMQRDLAQLVPE--ARIGIAHGQMPERELERVMLDFQKQHFNVLLSTTIIE 920

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 921  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTADAEKRLEA 980

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  K   
Sbjct: 981  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIKQ-- 1036

Query: 668  TQDPDLTS 675
             + PDL +
Sbjct: 1037 GKLPDLDA 1044


>gi|325295172|ref|YP_004281686.1| transcription-repair coupling factor [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065620|gb|ADY73627.1| transcription-repair coupling factor [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 1059

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 153/446 (34%), Positives = 231/446 (51%), Gaps = 15/446 (3%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P+  K    +    ER     L+     L  + K+ K   G  I  +  + ++  R  P+
Sbjct: 475 PKLDKLGGTSWKNLERKIKASLINFAKELAELYKERKSAKGEKILGDENLLREFERRFPY 534

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
            PT  Q  AI+++ +DM  +  M R++ GDVG GKT VA+ A   AV  G Q  ++ P  
Sbjct: 535 KPTPDQLKAIREVYKDMESEKPMDRLICGDVGFGKTEVAMRAAMKAVTDGRQVAVIVPTT 594

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA QHY   KK  +   + +E I+    +  +++ LE++ +G+  IIIGTH L QD ++
Sbjct: 595 ILADQHYRTFKKRFKGFPVKIEAISRFKTKKEQKEILEKLKNGEIDIIIGTHRLTQDDVE 654

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+I+DE+HRFGV+ + KLT+      VL ++ATPIPRTL     G  DIS I   
Sbjct: 655 FKNLGLLIIDEEHRFGVKTKEKLTKIKKNLDVLYLSATPIPRTLYSALSGFRDISVIETP 714

Query: 452 PAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           P GR+  K V+   +  D +++  ++  L    + + +   I+E +    +         
Sbjct: 715 PVGRRGTKVVVSKYS--DRILKTAVERELKRNGQVFIVQNDIDELEPLKIKVE------- 765

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  + I+HG+M     E VM  F  G  K+LIAT++IE G+D+  A+ +I+  AE 
Sbjct: 766 EMFPNIPVDIVHGQMKTEKIEKVMHKFFEGDIKILIATSIIESGLDIPSANTLIVIGAER 825

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDL 625
           FGL+QL+QLRGRVGRG E   C LL      L+  +  RL  +K       GF +A +DL
Sbjct: 826 FGLSQLYQLRGRVGRGIEKGYCYLLTSSKGKLTPEAVKRLEAMKKVSPVGGGFQLAMKDL 885

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPEL 651
           + R  G +LG KQSG    +     L
Sbjct: 886 EIRGAGTLLGPKQSGFVNTIGLDLYL 911


>gi|167755583|ref|ZP_02427710.1| hypothetical protein CLORAM_01097 [Clostridium ramosum DSM 1402]
 gi|167704522|gb|EDS19101.1| hypothetical protein CLORAM_01097 [Clostridium ramosum DSM 1402]
          Length = 1144

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 126/449 (28%), Positives = 229/449 (51%), Gaps = 17/449 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +  +  + +A ++  +        + G     + +I  +  R+  +  T  Q 
Sbjct: 551 QWQKTKAKARSKVDDIADKLIEIY--SARINQPGYAFPSDSEIQLEFERSFGYELTVDQL 608

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            ++++I  DM +   M R+L GDVG GKT VAL A   A+    Q   + P  IL+ QHY
Sbjct: 609 RSVEEIKADMEKSQPMDRLLCGDVGFGKTEVALRAAFKAILGNKQVAFLCPTTILSMQHY 668

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +    ++  + + ++        +++ L  +  G   +++GTH +    I +  + L+
Sbjct: 669 KTMIARFKDFPVKIALLNRFTSTKEKKQILSDLKLGNIDLLVGTHRILSKDIVFKDIGLL 728

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +DE+ RFGV+Q+ K+ +      VL +TATPIPRTL ++ +G   +S+I   P  R+P+
Sbjct: 729 CIDEEQRFGVKQKEKIKEYRKTIDVLTLTATPIPRTLQMSLMGIRGLSQIETPPKNRQPV 788

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T +I  N +  + + ++  L+   + +++  +  +            +N       + +
Sbjct: 789 QTYVIEKNNV-LIKQIIERELARDGQVFYLYNRTSQIANV-------AYNITLSVPGARV 840

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+ HG+M   + E VM  F N    +L+ TT+IE GID+ +A+ II+E+A+ FGL+QL+Q
Sbjct: 841 AVGHGQMDKNELEDVMMRFVNKEFNVLVCTTIIETGIDIPNANTIIVEDADKFGLSQLYQ 900

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           ++GRVGR    +   LLY+P   L++ +  RL  +K       G+ IA  DL  R  G+I
Sbjct: 901 IKGRVGRSNRGAYAYLLYNPTKVLNEEASKRLKAIKEFTELGSGYKIAMRDLAIRGSGDI 960

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           LG  QSG    +    E++  +L+ A  +
Sbjct: 961 LGGTQSGFIDSI--GFEMYMKILQDAINE 987


>gi|319949680|ref|ZP_08023714.1| transcription-repair coupling factor [Dietzia cinnamea P4]
 gi|319436671|gb|EFV91757.1| transcription-repair coupling factor [Dietzia cinnamea P4]
          Length = 1222

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 139/472 (29%), Positives = 236/472 (50%), Gaps = 17/472 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +A ++  L  ++Q     G     +    +++    PF+ T  Q 
Sbjct: 599  DWQNTKRKARKAVREIATELVQLYAKRQSA--PGRAFGPDTPWQREMEDAFPFTETVDQL 656

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI+++  DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 657  SAIEEVKADMEKSAPMDRVVVGDVGYGKTEVAVRAAFKAVQDGTQVAVLVPTTLLAQQHL 716

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + ++ ++     A  ++ L+ +A G   ++IGTH L    +++  L LV
Sbjct: 717  ATFTERMTGFPVTIKGLSRFTSDAEAKEILKGLADGTVDVVIGTHRLLATGVRWKNLGLV 776

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +T   T   VL M+ATPIPRTL ++  G  ++S+I   P  R P+
Sbjct: 777  IVDEEQRFGVEHKEHITSLRTHVDVLTMSATPIPRTLEMSLAGIREMSQILTPPEERLPV 836

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +         + +L EG + +++  ++         S   R   L     + +
Sbjct: 837  LTYVGAYSDKHVAAAIRRELLREG-QVFYVHNRVRTID-----STAARIRDLVPE--ARV 888

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I++ ++  GL+Q+HQ
Sbjct: 889  VVAHGQMGEEQLEQTVGGFWNREYDVLVCTTIVETGLDISNANTLIVDRSDQLGLSQMHQ 948

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    D   G  +A +DL+ R  G +
Sbjct: 949  LRGRVGRSRERGYAYFLYDPEKPLTETAYDRLATIAQNNDLGAGMAVAMKDLELRGAGNV 1008

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG +QSG         +L+  L+  A +  + I   +   T      IRI L
Sbjct: 1009 LGAEQSGHI--AGVGFDLYIRLVGEAVEAYRAIADGEKVETQEELGEIRIEL 1058


>gi|229816037|ref|ZP_04446358.1| hypothetical protein COLINT_03090 [Collinsella intestinalis DSM
            13280]
 gi|229808351|gb|EEP44132.1| hypothetical protein COLINT_03090 [Collinsella intestinalis DSM
            13280]
          Length = 1192

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 145/461 (31%), Positives = 232/461 (50%), Gaps = 17/461 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W+    +     + LA  +  L  R+      G     +     ++  + P+  T+ Q 
Sbjct: 582  DWSRATTKARKSAKKLAFDLVDLYTRRSS--ITGFAFGPDSASQIEMEESFPYDETRDQL 639

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI DI  DM     M R+L GDVG GKT VAL A    V+ G Q +++ P  ILAQQHY
Sbjct: 640  DAIADIKSDMESTKPMDRLLCGDVGFGKTEVALRAAFKCVDGGRQVMVLCPTTILAQQHY 699

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +      + VE+++     A +R+AL   A G+  ++IGTH L    +  ++L LV
Sbjct: 700  ETFFERFAPFGVEVEVLSRFRTPAQQRRALAAFAEGKVDVLIGTHRLLSADVNPHELGLV 759

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGVQ + +L        VL ++ATPIPRT+ +   G  D+S IT  P GR+P+
Sbjct: 760  IIDEEQRFGVQHKEQLKNMREQIDVLTLSATPIPRTMQMAMSGVRDMSLITTPPTGRRPV 819

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
               +   +  D V   +++ +  G + Y++  +++   ++  R        L     + I
Sbjct: 820  AVHVGEYD-PDVVSAAIRLEIGRGGQVYYVSNRVKTIDDAVERV-------LEAAPEARI 871

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS  + E VM  F      +LIATT++E GID   A+ +IIE+++  GLAQL+Q
Sbjct: 872  GVAHGKMSPREVEDVMVQFATKKIDVLIATTIVESGIDNSSANTLIIEDSQRLGLAQLYQ 931

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            L+GRVGR    +    ++    PL++ +  RL+ L   +D   G  IA  DL+ R  G +
Sbjct: 932  LKGRVGRSATQAYAYFMFPGELPLTEEATARLTALSEFQDLGSGMRIAMRDLEIRGAGSL 991

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            +G +Q G         +L   +L  A  +A+     D + +
Sbjct: 992  VGAEQHG--NLSSVGFDLFTQMLGAAVAEARGEGGADVEQS 1030


>gi|148239816|ref|YP_001225203.1| transcription-repair coupling factor [Synechococcus sp. WH 7803]
 gi|147848355|emb|CAK23906.1| Transcription-repair coupling factor [Synechococcus sp. WH 7803]
          Length = 1180

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 143/508 (28%), Positives = 249/508 (49%), Gaps = 19/508 (3%)

Query: 198  SFPSIAEAFNIIHNPRKAKDFEWTSPAR-ERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S+         P +      ++  + +  A   L    + L+ +  +  +  G    
Sbjct: 534  QLGSLGRYRANSDAPPQLSKMGGSAWVKAKERASKALRKVALDLVKLYAERHQAPGFAFP 593

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            V+G    ++  + P+ PT  Q  A  ++ +DM +   M R++ GDVG GKT VA+ A+  
Sbjct: 594  VDGPWQSELEESFPYEPTPDQLKATAEVKKDMEKSQPMDRLVCGDVGFGKTEVAIRAIFK 653

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A+ AG Q  ++AP  +LAQQH+  + +      I V ++        R+  LE +  G  
Sbjct: 654  AITAGRQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTAGERKSILEGLKKGTI 713

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
              ++GTH L   S  + KL L++VDE+ RFGV Q+ K+        VL ++ATPIPRTL 
Sbjct: 714  DAVVGTHQLLSKSTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLY 773

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++  G  ++S IT  P  R+PIKT +  ++  + +   ++  L  G + +++ P++E  +
Sbjct: 774  MSLSGVREMSLITTPPPLRRPIKTHLAALDE-EAIRSAIRQELDRGGQVFYVVPRVEGIE 832

Query: 497  ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                    +    L +      + + HG+M++ + ES M +F  G   +++ TT++E G+
Sbjct: 833  --------DVAAQLRQMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGL 884

Query: 556  DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN 613
            D+   + I+IE+A  FGLAQL+QLRGRVGR    +   L Y  +  LS+ +  RL  ++ 
Sbjct: 885  DIPRVNTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSEAARQRLRAIQE 944

Query: 614  T---EDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHIL 667
                  G+ +A  D++ R  G +LG++QSG  +   F +    L +SL EI  +D   + 
Sbjct: 945  FAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPSVD 1004

Query: 668  TQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
                DL          +    +   A++
Sbjct: 1005 DTQVDLQVTAFIPADWITDADEKMAAYR 1032


>gi|237734333|ref|ZP_04564814.1| transcription-repair coupling factor [Mollicutes bacterium D7]
 gi|229382563|gb|EEO32654.1| transcription-repair coupling factor [Coprobacillus sp. D7]
          Length = 1144

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 126/449 (28%), Positives = 229/449 (51%), Gaps = 17/449 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +  +  + +A ++  +        + G     + +I  +  R+  +  T  Q 
Sbjct: 551 QWQKTKAKARSKVDDIADKLIEIY--SARINQPGYAFPSDSEIQLEFERSFGYELTVDQL 608

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            ++++I  DM +   M R+L GDVG GKT VAL A   A+    Q   + P  IL+ QHY
Sbjct: 609 RSVEEIKADMEKSQPMDRLLCGDVGFGKTEVALRAAFKAILGNKQVAFLCPTTILSMQHY 668

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + +    ++  + + ++        +++ L  +  G   +++GTH +    I +  + L+
Sbjct: 669 KTMIARFKDFPVKIALLNRFTSTKEKKQILSDLKLGNIDLLVGTHRILSKDIVFKDIGLL 728

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +DE+ RFGV+Q+ K+ +      VL +TATPIPRTL ++ +G   +S+I   P  R+P+
Sbjct: 729 CIDEEQRFGVKQKEKIKEYRKTIDVLTLTATPIPRTLQMSLMGIRGLSQIETPPKNRQPV 788

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T +I  N +  + + ++  L+   + +++  +  +            +N       + +
Sbjct: 789 QTYVIEKNNV-LIKQIIERELARDGQVFYLYNRTSQIANV-------AYNITLSVPGARV 840

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+ HG+M   + E VM  F N    +L+ TT+IE GID+ +A+ II+E+A+ FGL+QL+Q
Sbjct: 841 AVGHGQMDKNELEDVMMRFVNKEFNVLVCTTIIETGIDIPNANTIIVEDADKFGLSQLYQ 900

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           ++GRVGR    +   LLY+P   L++ +  RL  +K       G+ IA  DL  R  G+I
Sbjct: 901 IKGRVGRSNRGAYAYLLYNPTKVLNEEASKRLKAIKEFTELGSGYKIAMRDLAIRGSGDI 960

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           LG  QSG    +    E++  +L+ A  +
Sbjct: 961 LGGTQSGFIDSI--GFEMYMKILQDAINE 987


>gi|311740779|ref|ZP_07714606.1| transcription-repair coupling factor [Corynebacterium
            pseudogenitalium ATCC 33035]
 gi|311304299|gb|EFQ80375.1| transcription-repair coupling factor [Corynebacterium
            pseudogenitalium ATCC 33035]
          Length = 1213

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 238/474 (50%), Gaps = 20/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q         + +     ++  N PF  T+ Q 
Sbjct: 588  DWKNTKKKARAAVREIAGELVELYAKRQAAPGHQ--FSPDNPWQAEMEDNFPFVETEDQM 645

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  +  DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH+
Sbjct: 646  LAIDAVKHDMESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGMQVAVLVPTTLLAQQHF 705

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + +E+++    +   +   + +A G   I++GTH L Q  + +  L L+
Sbjct: 706  DTFSERMTGFPVKIEVLSRFTSKKEAKDIFKGLADGSVDIVVGTHRLLQTGVHWKNLGLI 765

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +     +  VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 766  VVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 825

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T +       +V   ++  L    + ++I  ++ + +        ++   L +    + 
Sbjct: 826  LTYVGAYED-KQVAAAIRRELLRDGQTFFIHNKVSDIE--------KKARELRDLVPEAR 876

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + + HG+M++   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLH
Sbjct: 877  VVVAHGQMNEEVLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLH 936

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G 
Sbjct: 937  QLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGN 996

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD-PDLTSVRGQSIRILL 685
            +LG +QSG         +L+  L+  A +  K +   + P +T    + IRI L
Sbjct: 997  VLGAQQSGHI--AGVGFDLYVRLVGEAVETFKSLARGEAPTVTDEGPKEIRIDL 1048


>gi|218249019|ref|YP_002374390.1| transcription-repair coupling factor [Cyanothece sp. PCC 8801]
 gi|218169497|gb|ACK68234.1| transcription-repair coupling factor [Cyanothece sp. PCC 8801]
          Length = 1158

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 151/476 (31%), Positives = 248/476 (52%), Gaps = 21/476 (4%)

Query: 198 SFPSIAEAFNIIHNPRKAKDFE---WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
           SF S++   +   +P +        W    +      + LA  +  L  ++  K+    P
Sbjct: 533 SFDSLSRYRHTGSHPPELHKMTGKIWEKTKQRVRKSIKKLAVDLLNLYAKRAKKEGFIYP 592

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              +    +++  + P+ PT  Q  A++D+  D+     M R++ GDVG GKT VA+ A+
Sbjct: 593 --PDTPWQEELEDSFPYQPTPDQLKAVQDVKMDLESDRPMDRLVCGDVGFGKTEVAVRAI 650

Query: 315 AAAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
             AV +G  Q  ++AP  IL QQHY  +K+      I + ++      + ++  ++R+A 
Sbjct: 651 FKAVTSGHKQVALLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTTSEKKDIVQRLAT 710

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G+  I++GTH L   S+++  L L+++DE+ RFGV Q+ K+    T   VL +TATPIPR
Sbjct: 711 GELDIVVGTHQLLGQSVKFKNLGLLVIDEEQRFGVNQKEKIKVLKTEVDVLTLTATPIPR 770

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL ++  G  +IS IT  P  R+PIKT +   N  D V   ++  L  G + +++ P++E
Sbjct: 771 TLYMSLSGIREISLITTPPPSRRPIKTHLSSYN-PDVVRTAIRNELDRGGQIFYVVPRVE 829

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             +E   +             ++ I I HG+M   D E  M  F NG   +L+ TT+IE 
Sbjct: 830 GIEEVAGQIQ-------QMVPSARIVIAHGQMDVNDLEMTMLGFNNGEADILVCTTIIES 882

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL 611
           G+D+   + II+E+A+ FGL+QL+QLRGRVGR    +   LLY     LS+ +  RL  L
Sbjct: 883 GLDIPRVNTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLLYPNKGQLSETARQRLRAL 942

Query: 612 KNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           +       G+ +A  D++ R  G +LG +QSG    +    EL+  +L+ A K+ +
Sbjct: 943 QEFSQLGSGYQLATRDMEIRGVGNLLGAEQSGQMMAI--GFELYMEMLQEAIKEIQ 996


>gi|28197977|ref|NP_778291.1| transcription-repair coupling factor [Xylella fastidiosa Temecula1]
 gi|182680603|ref|YP_001828763.1| transcription-repair coupling factor [Xylella fastidiosa M23]
 gi|28056037|gb|AAO27940.1| transcription-repair coupling factor [Xylella fastidiosa Temecula1]
 gi|182630713|gb|ACB91489.1| transcription-repair coupling factor [Xylella fastidiosa M23]
          Length = 1195

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 151/488 (30%), Positives = 243/488 (49%), Gaps = 20/488 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +W+   R+       +A ++  +  R+Q +   G
Sbjct: 573  VAQLHLISRYSGASPETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQAR--AG 630

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + ++  + +      PF  T  Q +AI+  L+D+     M R++ GDVG GKT VA+ 
Sbjct: 631  LALRIDRTMYEPFAAGFPFEETPDQLAAIETTLRDLQSSQPMDRVVCGDVGFGKTEVAVR 690

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  I VE+++        +  L++++
Sbjct: 691  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPIRVEVLSRFKSTKEIKAELQKVS 750

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +I+GTH L Q  +++  L LVIVDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 751  EGTMDVIVGTHRLLQPDVKFKDLGLVIVDEEQRFGVRQKEALKSLRANVHLLTLTATPIP 810

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I P +    + E  +  L+ G + Y++   +
Sbjct: 811  RTLNMAMAGLRDLSIIATPPLNRLAVQTFITPWDN-ALLHEAFQRELARGGQLYFLHNDV 869

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +      L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 870  ESIG-----RMQRDLAQLVPE--ARIGIAHGQMPERELERVMLDFQKQHFNVLLSTTIIE 922

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 923  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTADAEKRLEA 982

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  K   
Sbjct: 983  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIKQ-- 1038

Query: 668  TQDPDLTS 675
             + PDL +
Sbjct: 1039 GKLPDLDA 1046


>gi|224369910|ref|YP_002604074.1| Mfd [Desulfobacterium autotrophicum HRM2]
 gi|223692627|gb|ACN15910.1| Mfd [Desulfobacterium autotrophicum HRM2]
          Length = 1165

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 154/485 (31%), Positives = 239/485 (49%), Gaps = 24/485 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     +     E +AG++  L    + +   G   +           + PF  T  Q  
Sbjct: 570  WQKSRAKAKKEVEKMAGELLKLYA--ERRVAKGFAFSRPDHFFNDFEASFPFEETPDQLK 627

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI D+L DM  +  M R++ GDVG GKT VA+ A   AV  G Q  I+ P  ILA+QH  
Sbjct: 628  AIDDVLVDMESERPMDRLVCGDVGYGKTEVAIRATFKAVTDGKQVAIVVPTTILAEQHVH 687

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              ++   N  I VE ++    +  + K ++ +  G+  ++IGTH L Q  I +  L L++
Sbjct: 688  TFRERFGNYPITVESLSRFRTKGEQAKIVKDLEQGKLDVVIGTHRLLQKDIAFKSLGLLV 747

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV+ +  L ++ ++  VL +TATPIPRTL ++  G  DIS I+  P  R+PI 
Sbjct: 748  IDEEQRFGVKHKEALKKRRSSVDVLALTATPIPRTLHMSLTGMRDISIISTPPVDRQPIV 807

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            + I   +        ++  L  G + ++I   I        +++ +   +L +      I
Sbjct: 808  SYISEYDD-AIAAGAIQKELERGGQIFFIHNNI--------KTIFKTAENLKKLVPEVRI 858

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HGR+++   E  M  F N    +L+ TT++E G+D+  A+ +II  A+ FGLAQ++Q
Sbjct: 859  AVAHGRLNEASLEKAMLQFINREIDMLVCTTIVESGLDIPSANTMIINRADMFGLAQIYQ 918

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGR+GRGEE +   L       L++++  RL+ L    D   GF IA +DL+ R  G  
Sbjct: 919  LRGRIGRGEEQAYAYLFVPEEHRLTRDAQKRLAALMEHRDLGSGFQIAMKDLQIRGAGSA 978

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG  QSG    +     L   LL+ A  D    L   P LT      I + L  +  +E 
Sbjct: 979  LGGSQSGHVAAVGYDMFL--KLLDEAVAD----LKGQP-LTDPLEPEINVTLSTFISDEY 1031

Query: 694  FQFIR 698
             Q I 
Sbjct: 1032 VQSIE 1036


>gi|289432962|ref|YP_003462835.1| transcription-repair coupling factor [Dehalococcoides sp. GT]
 gi|288946682|gb|ADC74379.1| transcription-repair coupling factor [Dehalococcoides sp. GT]
          Length = 1148

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 138/456 (30%), Positives = 227/456 (49%), Gaps = 20/456 (4%)

Query: 212 PRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
           P         EW     +     E  A ++  +  +++     G   + +    Q++  +
Sbjct: 546 PPSLHRLGTQEWQRAKEKASESAEETARELLEIYAKRELA--SGYAFSADTVWQQEMEAS 603

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             +  T  Q  A+ D+ +DM +   M R++ GDVG GKT VA+ A   AV  G Q  ++ 
Sbjct: 604 FSYVETPDQLKALYDVKEDMEKTRPMDRLILGDVGYGKTEVAIRAAFKAVMDGKQVAVLV 663

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQHY   ++      + VE+++    Q+ +++ +E +  G+  I IGTH L Q 
Sbjct: 664 PTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQKEVVENLEKGEVDICIGTHRLLQA 723

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            I++  L LV++DE+ RFGV  +    +      VL ++ATPIPRTL ++ +G  D+S I
Sbjct: 724 DIKFKDLGLVVIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSMVGVRDMSII 783

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R PIKTV+   +    + E +   +    + +++  ++          + ER  
Sbjct: 784 ETPPGERLPIKTVVAAFDER-LIREAILREMERNGQVFFVNNRV-----MGINLLAERIQ 837

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L     + I I HG+M++    +VM  F      +L+ TT+IE G+DV +A+ +II  A
Sbjct: 838 QLVPE--ARIGIGHGQMAEEKLAAVMADFVRHELDVLVCTTIIESGVDVPNANTLIINRA 895

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL---KNTEDGFLIAEE 623
           + FGL QL+QLRGRVGR  +++    LY     LS ++  RL  +        G+ IA +
Sbjct: 896 DRFGLTQLYQLRGRVGRSSQLAYAYFLYEKEKRLSGDAEKRLKTIYEAAELGAGYGIAMK 955

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           DL+ R  G +LG+KQSG    +     L+  +L  A
Sbjct: 956 DLEIRGAGTLLGVKQSGYINSVGFN--LYTQMLSEA 989


>gi|118471657|ref|YP_889663.1| transcription-repair coupling factor [Mycobacterium smegmatis str.
            MC2 155]
 gi|118172944|gb|ABK73840.1| transcription-repair coupling factor [Mycobacterium smegmatis str.
            MC2 155]
          Length = 1215

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 225/449 (50%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +A ++  L  ++Q     G     +     ++     F+ T  Q 
Sbjct: 591  DWANTKTKARRAVREIASELVALYAKRQSA--PGHAFGPDTPWQAEMEDAFGFTETIDQL 648

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 649  TAIQEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 708

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +          + V+ ++     A  R  +E +  G   ++IGTH L Q  + +  L L+
Sbjct: 709  QTFTNRMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLI 768

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 769  IVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 828

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   L+  L    +A++I  ++    E        R   L     + +
Sbjct: 829  LTYVGPHDD-KQVAAALRRELLRDGQAFYIHNRVRTIDE-----AAARVRQLVPE--ARV 880

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++   E  ++ F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 881  VVAHGQMNEETLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 940

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 941  LRGRVGRSRERGYAYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNV 1000

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +QSG         +L+  L+  A + 
Sbjct: 1001 LGAEQSGH--VAGVGFDLYVRLVGEAVEA 1027


>gi|255325397|ref|ZP_05366501.1| transcription-repair coupling factor [Corynebacterium
            tuberculostearicum SK141]
 gi|255297483|gb|EET76796.1| transcription-repair coupling factor [Corynebacterium
            tuberculostearicum SK141]
          Length = 1212

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 238/474 (50%), Gaps = 20/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q         + +     ++  N PF  T+ Q 
Sbjct: 588  DWKNTKKKARAAVREIAGELVELYAKRQAAPGHQ--FSPDNPWQAEMEDNFPFVETEDQM 645

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  +  DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH+
Sbjct: 646  LAIDAVKHDMESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGMQVAVLVPTTLLAQQHF 705

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + +E+++    +   +   + +A G   I++GTH L Q  + +  L L+
Sbjct: 706  DTFSERMTGFPVKIEVLSRFTSKKEAKDIFKGLADGSVDIVVGTHRLLQTGVHWKNLGLI 765

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +     +  VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 766  VVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 825

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T +       +V   ++  L    + ++I  ++ + +        ++   L +    + 
Sbjct: 826  LTYVGAYED-KQVAAAIRRELLRDGQTFFIHNKVSDIE--------KKARELRDLVPEAR 876

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + + HG+M++   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLH
Sbjct: 877  VVVAHGQMNEEVLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLH 936

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G 
Sbjct: 937  QLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGN 996

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD-PDLTSVRGQSIRILL 685
            +LG +QSG         +L+  L+  A +  K +   + P +T    + IRI L
Sbjct: 997  VLGAQQSGHI--AGVGFDLYVRLVGEAVETFKSLARGEAPTVTDEGPKEIRIDL 1048


>gi|73748965|ref|YP_308204.1| transcription-repair coupling factor [Dehalococcoides sp. CBDB1]
 gi|73660681|emb|CAI83288.1| transcription-repair coupling factor [Dehalococcoides sp. CBDB1]
          Length = 1148

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 138/456 (30%), Positives = 227/456 (49%), Gaps = 20/456 (4%)

Query: 212 PRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
           P         EW     +     E  A ++  +  +++     G   + +    Q++  +
Sbjct: 546 PPSLHRLGTQEWQRAKEKASESAEETARELLEIYAKRELA--SGYAFSADTVWQQEMEAS 603

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             +  T  Q  A+ D+ +DM +   M R++ GDVG GKT VA+ A   AV  G Q  ++ 
Sbjct: 604 FSYVETPDQLKALYDVKEDMEKTRPMDRLILGDVGYGKTEVAIRAAFKAVMDGKQVAVLV 663

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  +LAQQHY   ++      + VE+++    Q+ +++ +E +  G+  I IGTH L Q 
Sbjct: 664 PTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQKEVVENLEKGEVDICIGTHRLLQA 723

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            I++  L LV++DE+ RFGV  +    +      VL ++ATPIPRTL ++ +G  D+S I
Sbjct: 724 DIKFKDLGLVVIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSMVGVRDMSII 783

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R PIKTV+   +    + E +   +    + +++  ++          + ER  
Sbjct: 784 ETPPGERLPIKTVVAAFDER-LIREAILREMERNGQVFFVNNRV-----MGINLLAERIQ 837

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
            L     + I I HG+M++    +VM  F      +L+ TT+IE G+DV +A+ +II  A
Sbjct: 838 QLVPE--ARIGIGHGQMAEEKLAAVMADFVRHELDVLVCTTIIESGVDVPNANTLIINRA 895

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL---KNTEDGFLIAEE 623
           + FGL QL+QLRGRVGR  +++    LY     LS ++  RL  +        G+ IA +
Sbjct: 896 DRFGLTQLYQLRGRVGRSSQLAYAYFLYEKEKRLSGDAEKRLKTIYEAAELGAGYGIAMK 955

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           DL+ R  G +LG+KQSG    +     L+  +L  A
Sbjct: 956 DLEIRGAGTLLGVKQSGYINSVGFN--LYTQMLSEA 989


>gi|306992475|gb|ADN19354.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 430

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 164/433 (37%), Positives = 256/433 (59%), Gaps = 8/433 (1%)

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKS 198
           +P         +N   I  +Y L  GL+ +  +KI+  AL   +  + E+ +++ L +K 
Sbjct: 3   NPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEVEEFFDEEFLFEKG 62

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258
              I  A   I+ P+     E     + R  Y EL   Q+AL LM++  K + GI    E
Sbjct: 63  LMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMALFLMKRSVKGKKGIKF--E 117

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
               +  L  +PF  T +Q   +K+I+ DM+    M R++QGDVGSGKT+VA  +M  A+
Sbjct: 118 RVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGDVGSGKTVVAACSMYIAI 177

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           + G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  +++++ LE+I +G   I
Sbjct: 178 KNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKKEVLEKIKNGDYDI 237

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           +IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K   P VL+MTATPIPRTL L 
Sbjct: 238 VIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENPDVLVMTATPIPRTLALI 297

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
             GD+DIS I + P GRK +KT +I  +   +  E     + +G++ Y +CP IEE  + 
Sbjct: 298 LYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQVYVVCPLIEESDKI 357

Query: 499 NFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           N  S    +  +++     + + ++HG+M+D DKE VM+ F NG   +L++TTVIEVG++
Sbjct: 358 NAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVNGKIDILVSTTVIEVGVN 417

Query: 557 VVDASIIIIENAE 569
           V +A+++I+ENAE
Sbjct: 418 VPNATVMIVENAE 430


>gi|190573435|ref|YP_001971280.1| putative transcription-repair coupling factor [Stenotrophomonas
            maltophilia K279a]
 gi|190011357|emb|CAQ44972.1| putative transcription-repair coupling factor [Stenotrophomonas
            maltophilia K279a]
          Length = 1154

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 152/501 (30%), Positives = 248/501 (49%), Gaps = 21/501 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +W+   R+       +A ++  +  R+Q +   G
Sbjct: 531  VAQLHLISRYSGASAETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQAR--AG 588

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI   L+D++    M R++ GDVG GKT VA+ 
Sbjct: 589  LALQVDRAMYEPFAAGFPFEETPDQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVR 648

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  + VE+++        +  LE++A
Sbjct: 649  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPLKVEVLSRFKSTKEIKAELEKVA 708

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +I+GTH L Q  +++  L +VIVDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 709  AGTIDVIVGTHRLLQPDVKFKDLGMVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIP 768

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I   +    + E  +  L+ G + Y++   +
Sbjct: 769  RTLNMAMAGLRDLSIIATPPPNRLAVQTFITQWDN-ALLREAFQRELARGGQLYFLHNDV 827

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +    + L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 828  ESIG-----RMQRELSELVPE--ARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIE 880

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 881  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLITPDRRAITPDAEKRLEA 940

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  K   
Sbjct: 941  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIKQ-- 996

Query: 668  TQDPDLTS-VRGQSIRILLYL 687
             + PDL +    +   + L++
Sbjct: 997  GKLPDLDAGEEVRGAEVELHV 1017


>gi|254369252|ref|ZP_04985264.1| transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. holarctica FSC022]
 gi|157122202|gb|EDO66342.1| transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. holarctica FSC022]
          Length = 1141

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 143/417 (34%), Positives = 217/417 (52%), Gaps = 13/417 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  + +   G   ++  +   +   + P+  T  Q SAI D+ +DM     M R++ G
Sbjct: 566 LEIYAKREMRQGFSNSLNEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICG 625

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT + + A   A +   Q  I+ P  ILAQQHY   K    NT I +E+IT +  
Sbjct: 626 DVGFGKTEITMRAAFLATQNQKQVAILVPTTILAQQHYNSFKDRFTNTAINIEVITRSKT 685

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++  E +  G   IIIGTH L    I +  L L+I+DE+HRFGV Q+ KL      
Sbjct: 686 SKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAE 745

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L M+ATPIPR+L +      D+S I   PA R  +KT +   +  + + E +     
Sbjct: 746 IDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDN-NIIREAVSRETI 804

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  ++E  ++       E    L       IAI HG+MS+ + + VM  FK+ 
Sbjct: 805 RGGQIFYLYNKVETIQKKK-----EILQELFPRL--RIAIAHGQMSEKEIQKVMFDFKHN 857

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
              +L+ TT+IE GID+ +A+ +IIE+A + GLAQLHQLRGRVGR    +   +L     
Sbjct: 858 KHHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNKA 917

Query: 600 -LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            ++K++  RL  + NTE    GF +A  DL+ R  GEILG +QSG    +     + 
Sbjct: 918 SITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSGNIDGIGLNLYMD 974


>gi|227538907|ref|ZP_03968956.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241416|gb|EEI91431.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 1112

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 129/461 (27%), Positives = 226/461 (49%), Gaps = 18/461 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    +      + +A  +  L  +++ +       + +  +  ++  +  +  T  QE 
Sbjct: 509 WEKLKKTTKRKVKDIARDLIKLYAKRKAQTGN--AFSPDTYLQNELEASFIYEDTPDQEK 566

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+ +DM   + M R++ GDVG GKT VA+ A   AV    Q  ++ P  ILA QHY 
Sbjct: 567 ATADVKRDMESPHPMDRLICGDVGFGKTEVAIRAAFKAVADSKQVAVLVPTTILALQHYR 626

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +     ++ +         ++ L ++  G+  I+IGTH L    +++  L L+I
Sbjct: 627 TFTERLKGLPCNIDYVNRFKTTKQIKETLAKLTEGKIDILIGTHRLVSKDVKFKDLGLMI 686

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL         L +TATPIPRTL  + +G  D+S I+  P  R+P++
Sbjct: 687 IDEEQKFGVSVKEKLKVMRANVDSLTLTATPIPRTLHFSLMGARDLSIISTPPPNRQPVQ 746

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N    + E +   L  G + ++I  ++     ++ + +      L     + + 
Sbjct: 747 TELHVFNET-LIQEAVSYELDRGGQVFFIHNRV-----ADLKQLGALIQKLVPG--ARVG 798

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG++   D E VM  F +    +L+ATT+IE G+D+ +A+ I+I +A  FGL+ LHQ+
Sbjct: 799 VAHGQLEGDDLEDVMLKFISHEFDVLVATTIIEAGLDIPNANTIMINHAHMFGLSDLHQM 858

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +Y RLS ++       GF +A  DL  R  G +L
Sbjct: 859 RGRVGRSNKKAFCYLLSPPLSTLTSEAYKRLSAIEEFSELGSGFNVAMRDLDIRGSGNLL 918

Query: 635 GIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           G +QSG      F +    L +++ E+   +   +   + +
Sbjct: 919 GAEQSGFIAEIGFEMYHKILDEAIQELKDDEFTDLFADEKE 959


>gi|218261990|ref|ZP_03476631.1| hypothetical protein PRABACTJOHN_02302 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223648|gb|EEC96298.1| hypothetical protein PRABACTJOHN_02302 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1126

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 149/465 (32%), Positives = 229/465 (49%), Gaps = 19/465 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  + LL  ++  K+E G   + +  +  ++  +  +  T  Q  
Sbjct: 512 WEKMKERTKSKVKDIARDLILLYSKR--KQEKGFAYSPDSFMQHELEASFIYEDTPDQMK 569

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+
Sbjct: 570 ATADVKTDMENDRPMDRLICGDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQ 629

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++    +E I+        R+ L+ +  G+ +IIIGTH +    + +  L L+I
Sbjct: 630 TFSERLKDFPCRIEYISRARTAKEIRETLKDLKEGKINIIIGTHRIVGKDVTFKDLGLLI 689

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S IT  P  R P++
Sbjct: 690 IDEEQKFGVSVKEKLRQLKANVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQ 749

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  D + E +   +S   + ++I  +I+   E       E          + IA
Sbjct: 750 TEVERFN-PDIIREAINFEMSRNGQVFFINNRIQNIYEMEALVKREV-------PDARIA 801

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M     E ++  F N    +LIAT+++E GIDV +A+ III NA+ FGL+ LHQL
Sbjct: 802 VGHGQMEPDKLEKIILDFVNYEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQL 861

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR    + C LL  P   L++ +  RL  ++N      G  IA +DL  R  G +L
Sbjct: 862 RGRVGRSNRKAFCYLLSPPLSSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNML 921

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKD--AKHILTQDPDLTSVR 677
           G +QSG    L    E +  +LE A  +  A+       D T  R
Sbjct: 922 GAEQSGFIADL--GYETYQKILEEAVDELKAEEFADLYSDATEKR 964


>gi|300770435|ref|ZP_07080314.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762911|gb|EFK59728.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 1112

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 129/461 (27%), Positives = 226/461 (49%), Gaps = 18/461 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    +      + +A  +  L  +++ +       + +  +  ++  +  +  T  QE 
Sbjct: 509 WEKLKKTTKRKVKDIARDLIKLYAKRKAQTGN--AFSPDTYLQNELEASFIYEDTPDQEK 566

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+ +DM   + M R++ GDVG GKT VA+ A   AV    Q  ++ P  ILA QHY 
Sbjct: 567 ATADVKRDMESPHPMDRLICGDVGFGKTEVAIRAAFKAVADSKQVAVLVPTTILALQHYR 626

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +     ++ +         ++ L ++  G+  I+IGTH L    +++  L L+I
Sbjct: 627 TFTERLKGLPCNIDYVNRFKTTKQIKETLAKLTEGKIDILIGTHRLVSKDVKFKDLGLMI 686

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL         L +TATPIPRTL  + +G  D+S I+  P  R+P++
Sbjct: 687 IDEEQKFGVSVKEKLKVMRANVDSLTLTATPIPRTLHFSLMGARDLSIISTPPPNRQPVQ 746

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N    + E +   L  G + ++I  ++     ++ + +      L     + + 
Sbjct: 747 TELHVFNET-LIQEAVSYELDRGGQVFFIHNRV-----ADLKQLGALIQKLVPG--ARVG 798

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG++   D E VM  F +    +L+ATT+IE G+D+ +A+ I+I +A  FGL+ LHQ+
Sbjct: 799 VAHGQLEGDDLEDVMLKFISHEFDVLVATTIIEAGLDIPNANTIMINHAHMFGLSDLHQM 858

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +Y RLS ++       GF +A  DL  R  G +L
Sbjct: 859 RGRVGRSNKKAFCYLLSPPLSTLTSEAYKRLSAIEEFSELGSGFNVAMRDLDIRGSGNLL 918

Query: 635 GIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           G +QSG      F +    L +++ E+   +   +   + +
Sbjct: 919 GAEQSGFIAEIGFEMYHKILDEAIQELKDDEFTDLFADEKE 959


>gi|145350405|ref|XP_001419597.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579829|gb|ABO97890.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 539

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 196/497 (39%), Positives = 286/497 (57%), Gaps = 23/497 (4%)

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
           LL +    S +EA   IH PR     E  + ARERLA++EL+  Q+ALL  R + +    
Sbjct: 7   LLAELGLLSHSEAVKNIHRPRN---VEAVAQARERLAFEELVLLQVALLQERSRLQALPV 63

Query: 253 I-----PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
                    V   +  ++   +PF+ T+SQES++++IL DM+    MLR+LQGDVG GKT
Sbjct: 64  SESTEGVCIVGTALTDELRSELPFALTRSQESSLEEILSDMAGPAPMLRLLQGDVGCGKT 123

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRR 365
           +VA +A+ AAV AG Q   MAP  +LA QH+  +            V ++TG+   A R 
Sbjct: 124 VVAAMALLAAVGAGHQGAFMAPTEVLATQHHRVLTDLLSQMRDPPKVALLTGSTKTAERA 183

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT-APHVL 424
           + LE +  G+  II+GTHAL  + + +  L + +VDEQHRFGV+QR  L  K    PH+L
Sbjct: 184 QILEDLNDGKIGIIVGTHALIHEKVVFSSLGIAVVDEQHRFGVEQRAGLLAKGKLPPHML 243

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            M+ATPIPRTL +T  G++ +S I EKPAGR PI T +  ++   +  + +   +S G +
Sbjct: 244 TMSATPIPRTLAMTKFGEMALSVIDEKPAGRLPIITTVCGVDEHSQAYDSMCEEVSRGGQ 303

Query: 485 AYWICPQIEEK---KESNFRSVVERFNSL-HEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           AY I   + E    + S  +   E +  L  ++      ++HG++   +K + ++ F +G
Sbjct: 304 AYVILRLVNESGSSRMSEVKGAEEEYARLVSKYPNVRFGLLHGQLGADEKAAALEKFSSG 363

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             + L+AT+V+EVG+DV +AS+IIIE+A+ FGLA LHQLRGRVGRG   S C LL+ P  
Sbjct: 364 ETQALVATSVVEVGVDVPNASVIIIEDADGFGLAALHQLRGRVGRGARQSKCFLLHSPGA 423

Query: 601 SKN-------SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI-AQPELH 652
            +N       +  RL VL+ + +GF IAE DL+ R  GE+ G KQSG    L  A     
Sbjct: 424 GENAELKGDRARDRLRVLEQSNNGFRIAESDLQLRGAGELFGTKQSGQQVNLFHASMSTD 483

Query: 653 DSLLEIARKDAKHILTQ 669
             LLE ARK A  ++++
Sbjct: 484 LYLLEAARKAAAEMISR 500


>gi|167041424|gb|ABZ06176.1| putative TRCF domain protein [uncultured marine microorganism
           HF4000_006O13]
          Length = 1147

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 152/426 (35%), Positives = 217/426 (50%), Gaps = 15/426 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +       +G       K  +       +  T+ Q   I+D+L DM+    M R++ G
Sbjct: 572 LEIYANRAIAVGKSHVANQKDYENFCDGFEYVLTQDQAKVIEDVLDDMAASKSMDRLVCG 631

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VAL A       G Q  ++ P  ILAQQH+E   +      I + I++    
Sbjct: 632 DVGFGKTEVALRAAFTCAINGYQVALLVPTTILAQQHFETFNERFSEWPIAINILSRLQT 691

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
             +  +    I  G+A IIIGTHAL  D + Y  L LVIVDE+HRFGV+ + KL      
Sbjct: 692 SKNNNQVRTDIEKGKADIIIGTHALLSDKVVYKNLGLVIVDEEHRFGVRHKEKLKALRKD 751

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              L +TATPIPRTL +      DIS I   P GR P+KT I   ++   + E  +  +S
Sbjct: 752 VDYLALTATPIPRTLNMAIGELKDISMIATPPEGRIPVKTYISQWDK-SLIHEACQREIS 810

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G +  ++  +I++ +     ++ E    +      S+ I HGRM +   E VM  F N 
Sbjct: 811 RGGQVLFVHNRIDDIE-----NMAETIRQIMP--VGSLEIAHGRMKERSLERVMMKFYNN 863

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
              +L+AT++IE G+D+ +A+ III  A+ FGLAQLHQLRGRVGR E  S   L+  P  
Sbjct: 864 EFDVLLATSIIESGLDIPNANTIIINRADRFGLAQLHQLRGRVGRSERQSYAYLMIPPKH 923

Query: 600 -LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
            L+     RL  ++  ED   GF++A  DL+ R  GEILG +QSG  + +     L+  +
Sbjct: 924 TLTNEGRQRLEAIEAIEDLGVGFILATHDLEIRGAGEILGDEQSGQIQKIGFS--LYKDM 981

Query: 656 LEIARK 661
           L  A  
Sbjct: 982 LAQAID 987


>gi|154492199|ref|ZP_02031825.1| hypothetical protein PARMER_01833 [Parabacteroides merdae ATCC
           43184]
 gi|154087424|gb|EDN86469.1| hypothetical protein PARMER_01833 [Parabacteroides merdae ATCC
           43184]
          Length = 1167

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 146/451 (32%), Positives = 224/451 (49%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  + LL  ++  K+E G   + +  +  ++  +  +  T  Q  
Sbjct: 553 WEKMKERTKSKVKDIARDLILLYSKR--KQEKGFAYSPDSFMQHELEASFIYEDTPDQMK 610

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+
Sbjct: 611 ATADVKADMENDRPMDRLICGDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQ 670

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++    +E I+        R+ L+ +  G  +IIIGTH +    + +  L L+I
Sbjct: 671 TFSERLKDFPCRIEYISRARTAKEIRETLKDLKEGNINIIIGTHRIVGKDVTFKDLGLLI 730

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S IT  P  R P++
Sbjct: 731 IDEEQKFGVSVKEKLRQLKANVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQ 790

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  D + E +   +S   + ++I  +I+   E       E          + IA
Sbjct: 791 TEVERFN-PDIIREAINFEMSRNGQVFFINNRIQNIYEMEALVKREV-------PDARIA 842

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M     E ++  F N    +LIAT+++E GIDV +A+ III NA+ FGL+ LHQL
Sbjct: 843 VGHGQMEPEKLEKIILDFVNYEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQL 902

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR    + C LL  P   L++ +  RL  ++N      G  IA +DL  R  G +L
Sbjct: 903 RGRVGRSNRKAFCYLLSPPLSSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNML 962

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG    L    E +  +LE A  + K 
Sbjct: 963 GAEQSGFIADL--GYETYQKILEEAVDELKA 991


>gi|315187200|gb|EFU20957.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
           6578]
          Length = 1127

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 135/456 (29%), Positives = 237/456 (51%), Gaps = 15/456 (3%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           PR  K    +   R+      +      LL +  + K   G     + +   +     PF
Sbjct: 527 PRLDKLGSSSWQKRKERVKKSVEDLAKRLLAIYSRRKLAHGFAFPPDTEWQMEFEARFPF 586

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q   I+++ +DM     M R++ GDVG GKT +AL A   AV AG Q  I+AP  
Sbjct: 587 EETEDQLRCIEEVKRDMESPRPMDRLVCGDVGFGKTEIALRAAFKAVTAGKQVAILAPTT 646

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           IL +QHYE  ++  +   +   +++  +P   +++ L+ +  G+  I+IGTH + Q  + 
Sbjct: 647 ILVEQHYETFQERLEGFPVRAAMLSRFVPVPEQKEILKALREGKIDILIGTHRILQKDVV 706

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+++DE+ RFGV+ + +L +   +   L +TATPIPRTL ++ L   DIS +   
Sbjct: 707 FKDLGLLVIDEEQRFGVKDKERLKELKASVDCLTLTATPIPRTLHMSLLKIRDISLLETP 766

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R+PI+T I+  +  + +   ++  +  G + +++  ++E   +            L 
Sbjct: 767 PRERRPIETHILEFSE-EVIARAIRREVERGGQVFYLHNRVETLPQVKTF-----IERLV 820

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 + + HG+MS    E +M  F +G   +L++TT+IE GI++ +A+ III+ A+ +
Sbjct: 821 PEVM--VEVAHGKMSSHQLEEIMHRFIHGGFHVLVSTTIIENGINIPNANTIIIDRADMY 878

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
           G+AQL+QLRGRVGR +  +   L Y     +S+ +  RL V+ +  +   GF +A +DL+
Sbjct: 879 GIAQLYQLRGRVGRSDRTAYAYLFYPAQREISELAAKRLQVIADHTELGAGFKVALKDLE 938

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            R  G +LG +QSG         +++  LL+ A ++
Sbjct: 939 VRGAGNLLGREQSG--DIHSVGFDMYLRLLDEAIRE 972


>gi|108762520|ref|YP_629274.1| transcription-repair coupling factor [Myxococcus xanthus DK 1622]
 gi|108466400|gb|ABF91585.1| transcription-repair coupling factor [Myxococcus xanthus DK 1622]
          Length = 1188

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 149/465 (32%), Positives = 238/465 (51%), Gaps = 20/465 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    +        +A ++  L +    K   G   +   +   +   +  F  T  Q  
Sbjct: 592  WEKTKKRVKEQLLKMAAEL--LQIAAARKAHPGHAFSAPDRYFAQFEADFEFEETPDQAK 649

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+D+L DM +   M R++ GDVG GKT VA+ A   A     Q  ++ P  +LAQQH+ 
Sbjct: 650  AIEDVLADMQKPEPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVLVPTTVLAQQHFL 709

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              KK   +  + VE+I+G       R+ L+R   G+  I+IGTH L    + + +L L+I
Sbjct: 710  SFKKRFADYPVTVEVISGLKKAPEVREILKRAKEGKVDILIGTHKLLGGEVAFKELGLMI 769

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV+Q+  L +  +   VL +TATPIPRTL ++  G  D+S I   P  R+ I+
Sbjct: 770  VDEEQRFGVKQKESLKKWRSQIDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIR 829

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++       V E ++  ++ G + +++  ++E       +       +L      SI 
Sbjct: 830  TFVMKYEDT-VVKEAIEREVARGGQVFFVHNRVESLPSIETQ-----LRALVPQV--SIG 881

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M +   E VM +F     ++L+ T++IE GID+  A+ +I+  A+ FGLAQL+QL
Sbjct: 882  VAHGQMGEGQLEKVMLAFTEKKYQVLLCTSIIESGIDISSANTMIVNRADQFGLAQLYQL 941

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR +E +   LL      ++K++  RL VL+N  +   GF IA  DL+ R  G +L
Sbjct: 942  RGRVGRSKERAYAYLLVPSRRAVTKDAQRRLEVLQNFTELGAGFSIASHDLEIRGAGNLL 1001

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHI---LTQDPDLTSV 676
            G KQSG    +     ++  LLE A  + +     +  +PD+T  
Sbjct: 1002 GDKQSGAIAEIGFD--MYAQLLEEAVAEMQGQPPKVQIEPDVTLP 1044


>gi|88808865|ref|ZP_01124374.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805]
 gi|88786807|gb|EAR17965.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805]
          Length = 1180

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 143/508 (28%), Positives = 249/508 (49%), Gaps = 19/508 (3%)

Query: 198  SFPSIAEAFNIIHNPRKAKDFEWTSPAR-ERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S+         P +      ++  + +  A   L    + L+ +  +  +  G    
Sbjct: 534  QLGSLGRYRANSDAPPQLSKMGGSAWVKAKERASKALRKVALDLVKLYAERHQAPGFAFP 593

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            V+G    ++  + P+ PT  Q  A  ++ +DM +   M R++ GDVG GKT VA+ A+  
Sbjct: 594  VDGPWQTELEESFPYEPTPDQLKATAEVKRDMEKSQPMDRLVCGDVGFGKTEVAIRAIFK 653

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A+ AG Q  ++AP  +LAQQH+  + +      I V ++        R+  LE +  G  
Sbjct: 654  AITAGRQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTAGERKSILEGLKKGTI 713

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
              ++GTH L   S  + KL L++VDE+ RFGV Q+ K+        VL ++ATPIPRTL 
Sbjct: 714  DAVVGTHQLLSKSTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLY 773

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++  G  ++S IT  P  R+PIKT +  ++  + +   ++  L  G + +++ P++E  +
Sbjct: 774  MSLSGVREMSLITTPPPLRRPIKTHLAALDE-EAIRSAIRQELDRGGQVFYVVPRVEGIE 832

Query: 497  ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                    +    L +      + + HG+M++ + ES M +F  G   +++ TT++E G+
Sbjct: 833  --------DVAGQLRQMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGL 884

Query: 556  DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN 613
            D+   + I+IE+A  FGLAQL+QLRGRVGR    +   L Y  +  LS+ +  RL  ++ 
Sbjct: 885  DIPRVNTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSEAARQRLRAIQE 944

Query: 614  T---EDGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHIL 667
                  G+ +A  D++ R  G +LG++QSG  +   F +    L +SL EI  +D   + 
Sbjct: 945  FAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPSVD 1004

Query: 668  TQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
                DL          +    +   A++
Sbjct: 1005 DTQVDLQVTAFIPADWITDADEKMAAYR 1032


>gi|118602982|ref|YP_904197.1| transcription-repair coupling factor [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567921|gb|ABL02726.1| transcription-repair coupling factor [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 1142

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 141/461 (30%), Positives = 230/461 (49%), Gaps = 16/461 (3%)

Query: 198 SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
           +  S     +  + P  K    +W+   ++       +A ++  +  ++  K  I     
Sbjct: 526 NLISRYAGISSENAPLHKLGTNQWSKAKKKAGEALFDVAAELLEIYAKRASK--ISFAFP 583

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
                    + + PF  T  Q   + ++L DM     M R++ GDVG GKT +A+ A   
Sbjct: 584 KPNDAYSSFVASFPFEETPDQLKTMDEVLADMQSCRPMDRLVCGDVGFGKTEIAMRAAFL 643

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           AVEAG Q  I+ P  +L+ QHY+       N  + +  ++    Q  ++  ++++  G  
Sbjct: 644 AVEAGKQVAILVPTTLLSNQHYQSFVDRFINHPVEIAALSRFQTQKEKKLIIKKLNQGTI 703

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            IIIGTH + Q +I+Y  L L+I+DE+HRFGV+Q+  L +      +L MTATPIPRTL 
Sbjct: 704 DIIIGTHTIIQSTIKYKDLGLIIIDEEHRFGVKQKEALKKIRGESDILTMTATPIPRTLN 763

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +      ++S I   PA R  I+T +   N  + + E +   +  G + + +   I+   
Sbjct: 764 MALGSLRELSIIATPPAKRSAIQTFVQEWNN-NNIKEAITREMHRGGQVFVLHNDIDSID 822

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           +     +VE    +       IA  HG+M   + + +M  F +   ++L+ TT+IE GID
Sbjct: 823 K-----MVENLKQIMPKIHVRIA--HGQMPTRELKKIMSDFYHARFQILVCTTIIETGID 875

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
           + +A+ III NA++FGLAQLHQLRGRVGR    +   L+      LSK +  RL V+++ 
Sbjct: 876 IPNANTIIINNAQNFGLAQLHQLRGRVGRSHHRAYAYLIIKSYQLLSKTAKKRLDVIESL 935

Query: 615 ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           E+   GF++A  DL+ R  G++LG  QSG    +       
Sbjct: 936 EELGAGFILANHDLEIRGAGDLLGDNQSGKINEIGFNLYHD 976


>gi|15836650|ref|NP_297338.1| transcription-repair coupling factor [Xylella fastidiosa 9a5c]
 gi|9104811|gb|AAF82858.1|AE003858_12 transcription-repair coupling factor [Xylella fastidiosa 9a5c]
          Length = 1193

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 151/488 (30%), Positives = 243/488 (49%), Gaps = 20/488 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +W+   R+       +A ++  +  R+Q +   G
Sbjct: 571  VAQLHLISRYSGASPETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQAR--AG 628

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + ++  + +      PF  T  Q +AI+  L+D+     M R++ GDVG GKT VA+ 
Sbjct: 629  LALRIDRTMYEPFAAGFPFEETPDQLAAIETTLRDLQSSQPMDRVVCGDVGFGKTEVAVR 688

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  I VE+++        +  L++++
Sbjct: 689  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPIRVEVLSRFKSTKEIKAELQKVS 748

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +I+GTH L Q  +++  L LVIVDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 749  EGTMDVIVGTHRLLQPDVKFKDLGLVIVDEEQRFGVRQKEALKSLRANVHLLTLTATPIP 808

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I P +    + E  +  L+ G + Y++   +
Sbjct: 809  RTLNMAMAGLRDLSIIATPPLNRLAVQTFITPWDN-ALLHEAFQRELARGGQLYFLHNDV 867

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +      L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 868  ESIG-----RMQRDLAQLVPE--ARIGIAHGQMPERELERVMLDFQKQHFNVLLSTTIIE 920

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 921  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTADAEKRLEA 980

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  K   
Sbjct: 981  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIKQ-- 1036

Query: 668  TQDPDLTS 675
             + PDL +
Sbjct: 1037 GKLPDLDA 1044


>gi|154496044|ref|ZP_02034740.1| hypothetical protein BACCAP_00328 [Bacteroides capillosus ATCC 29799]
 gi|150274599|gb|EDN01663.1| hypothetical protein BACCAP_00328 [Bacteroides capillosus ATCC 29799]
          Length = 1169

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 140/446 (31%), Positives = 230/446 (51%), Gaps = 16/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + LA  +  L  ++Q +   G   + + +  ++      ++ T  Q 
Sbjct: 566  DWEKAKTRAKKAVKDLAKGLIQLYAQRQRQ--PGFAFSPDSEWMREFEEQFEYTETDDQL 623

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I +I  DM     M R+L GDVG GKT VA  A+   V  G QA I+ P  +LA+QHY
Sbjct: 624  RCIAEIKGDMEAPRPMDRLLCGDVGYGKTEVAFRAIMKCVLDGKQAAILVPTTVLARQHY 683

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+      + +++++     A  ++ L R+  GQ  ++IGTH LFQ  +++  L L+
Sbjct: 684  LSAKQRFAKYPVEIDVVSRFRTPAQMKETLRRVEAGQIDLLIGTHRLFQKDVKFKDLGLL 743

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV  + KL + +    VL ++ATPIPRTL +   G  D+S + E P+ R+P+
Sbjct: 744  VIDEEQRFGVAHKEKLKEMSRQVDVLTLSATPIPRTLNMALSGIRDMSTLEEPPSDRQPV 803

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  +    + + ++  L  G + Y++  ++E    +  R        L E    ++
Sbjct: 804  QTYVLEHD-WGVLFDAMRRELERGGQVYYLHNRVETITRTAARIR----EMLGEDV--TV 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS  +   VM     G   +L+ TT+IE GID+ +A+ +IIE+A+  GLAQLHQ
Sbjct: 857  GVAHGKMSQEELNDVMTRMSEGEVDVLVCTTIIETGIDISNANTLIIEDADKMGLAQLHQ 916

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEI 633
            +RGRVGR    +   L +     LS+ +  RL  ++       GF IA  DL+ R  G +
Sbjct: 917  IRGRVGRSSRRAYAYLTFRRGKVLSEVASKRLGAIREFAEFGSGFKIAMRDLEIRGAGNV 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +QSG    +    +L+  LLE A
Sbjct: 977  LGPEQSGF--LMSVGYDLYLKLLEEA 1000


>gi|3914013|sp|O52236|MFD_MYXXA RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|2736296|gb|AAB94134.1| transcription-repair coupling factor [Myxococcus xanthus]
          Length = 1201

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 149/465 (32%), Positives = 238/465 (51%), Gaps = 20/465 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    +        +A ++  L +    K   G   +   +   +   +  F  T  Q  
Sbjct: 605  WEKTKKRVKEQLLKMAAEL--LQIAAARKAHPGHAFSAPDRYFAQFEADFEFEETPDQAK 662

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+D+L DM +   M R++ GDVG GKT VA+ A   A     Q  ++ P  +LAQQH+ 
Sbjct: 663  AIEDVLADMQKPEPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVLVPTTVLAQQHFL 722

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              KK   +  + VE+I+G       R+ L+R   G+  I+IGTH L    + + +L L+I
Sbjct: 723  SFKKRFADYPVTVEVISGLKKAPEVREILKRAKEGKVDILIGTHKLLGGEVAFKELGLMI 782

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV+Q+  L +  +   VL +TATPIPRTL ++  G  D+S I   P  R+ I+
Sbjct: 783  VDEEQRFGVKQKESLKKWRSQIDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIR 842

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++       V E ++  ++ G + +++  ++E       +       +L      SI 
Sbjct: 843  TFVMKYEDT-VVKEAIEREVARGGQVFFVHNRVESLPSIETQ-----LRALVPQV--SIG 894

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M +   E VM +F     ++L+ T++IE GID+  A+ +I+  A+ FGLAQL+QL
Sbjct: 895  VAHGQMGEGQLEKVMLAFTEKKYQVLLCTSIIESGIDISSANTMIVNRADQFGLAQLYQL 954

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR +E +   LL      ++K++  RL VL+N  +   GF IA  DL+ R  G +L
Sbjct: 955  RGRVGRSKERAYAYLLVPSRRAVTKDAQRRLEVLQNFTELGAGFSIASHDLEIRGAGNLL 1014

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHI---LTQDPDLTSV 676
            G KQSG    +     ++  LLE A  + +     +  +PD+T  
Sbjct: 1015 GDKQSGAIAEIGFD--MYAQLLEEAVAEMQGQPPKVQIEPDVTLP 1057


>gi|16331597|ref|NP_442325.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
 gi|3914015|sp|Q55750|MFD_SYNY3 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|1001661|dbj|BAA10395.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
          Length = 1199

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 147/477 (30%), Positives = 252/477 (52%), Gaps = 23/477 (4%)

Query: 198  SFPSIAEAFNIIHNPRKAKDFE---WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
            S  S++   +    P +        W +   +     + LA  +  L  ++  +  +G  
Sbjct: 570  SLDSLSRFRHTGTRPPELHKMGGKVWEATKNKVRKAVKKLAVDLLNLYAKRAKQ--VGYA 627

Query: 255  INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
               +    Q++  + P+ PT  Q  A++D+ +D+     M R++ GDVG GKT VA+ A+
Sbjct: 628  YPPDSPWQQELEDSFPYQPTPDQLKAVQDVKRDLEGDRPMDRLVCGDVGFGKTEVAVRAI 687

Query: 315  AAAVEAG-GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
              AV +G  Q  ++AP  +L QQHY  +K+      I + ++      + +++ L ++  
Sbjct: 688  FKAVTSGNKQVALLAPTTVLTQQHYHTLKERFAPYPITIGLLNRFRTASEKKEILAKLKS 747

Query: 374  GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            G+  I++GT  +   S+++  L L+++DE+ RFGV Q+ K+    T   VL +TATPIPR
Sbjct: 748  GELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIPR 807

Query: 434  TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQI 492
            TL ++  G  ++S IT  P  R+PIKT + P N   EVI   ++  L  G + +++ P+I
Sbjct: 808  TLYMSLSGIREMSLITTPPPSRRPIKTHLSPYN--PEVIRTAIRNELDRGGQVFYVVPRI 865

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E  +E   +             ++ IAI HG+M + + ES M +F +G   +L+ TT+IE
Sbjct: 866  EGIEELGGQLR-------QMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIE 918

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
             G+D+   + II+E+A+ FGLAQL+QLRGRVGR    +   LLY     L++ +  RL  
Sbjct: 919  AGLDIPRVNTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRA 978

Query: 611  LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            L+       G+ +A  D++ R  G +LG +QSG  + +    E +  +L+ A K+ +
Sbjct: 979  LQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSGQMEAI--GYEFYMEMLQDAIKEIQ 1033


>gi|149020164|ref|ZP_01835138.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930842|gb|EDK81823.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP23-BS72]
          Length = 1169

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 234/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K   +   GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGFGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|332071328|gb|EGI81823.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA17545]
          Length = 1169

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 234/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G+  + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGLAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|332829530|gb|EGK02179.1| hypothetical protein HMPREF9455_01813 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 1108

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 227/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +  +  + +A  +  L  +++ ++      + +  +  ++  +  +  T  Q  
Sbjct: 499 WNKIKEKTKSKVKDIARDLIQLYAKRRQEEG--FKFSPDSFLQHELEASFIYEDTPDQVK 556

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+ QDM     M R++ GDVG GKT VA+     AV    Q  ++ P  +LA QHY+
Sbjct: 557 ATADVKQDMENSKPMDRLICGDVGFGKTEVAIRGAFKAVSDNKQVAVLVPTTVLAYQHYQ 616

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++  ++    VE I+        ++ L  +  G+  ++IGTH +    IQ+  L L+I
Sbjct: 617 TFRERLKDFPCRVEYISRARSANQIKETLNDLKEGKVDVLIGTHRIVSKDIQFKDLGLLI 676

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q  +    L MTATPIPRTL  + +G  D+S IT  P  R PI+
Sbjct: 677 IDEEQKFGVAVKEKLKQMKSNVDTLTMTATPIPRTLQFSLMGARDLSAITTPPPNRYPIQ 736

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +    + E ++  +S   + ++I  +I+   E       E          + + 
Sbjct: 737 TEVHTFD-PHIIREAIEFEMSRNGQVFFINNRIKNIYELEDIIRREV-------PDARVV 788

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M     ESV+  F N    +LIAT++IE GID+ +A+ II+ NA++FGL+ LHQL
Sbjct: 789 VGHGQMDPAKLESVIIDFVNHEYDVLIATSIIESGIDIPNANTIIVNNAQNFGLSDLHQL 848

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + +   LL  P   L+  +  RL  ++N  +   GF IA +DL  R  G +L
Sbjct: 849 RGRVGRSNKKAFAYLLAPPLHTLTPEARRRLQAIENFSELGHGFHIAMQDLDIRGAGNLL 908

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E++  +L  A  + K
Sbjct: 909 GAEQSGFIADL--GYEVYQKILTEAVNELK 936


>gi|307718846|ref|YP_003874378.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
           6192]
 gi|306532571|gb|ADN02105.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
           6192]
          Length = 1127

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 136/456 (29%), Positives = 237/456 (51%), Gaps = 15/456 (3%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           PR  K    +   R+      +      LL +  + K   G     + +   +     PF
Sbjct: 527 PRLDKLGSSSWQKRKERVKKSVEDLAKRLLAIYSRRKLAHGFAFPPDTEWQMEFEARFPF 586

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q   I+++ +DM     M R++ GDVG GKT +AL A   AV AG Q  I+AP  
Sbjct: 587 EETEDQLRCIEEVKRDMESPRPMDRLVCGDVGFGKTEIALRAAFKAVTAGKQVAILAPTT 646

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           IL +QHYE  ++  +   +   +++  +P   +R+ L+ +  G+  I+IGTH + Q  + 
Sbjct: 647 ILVEQHYETFQERLEGFPVRAAMLSRFVPVPEQREILKDLREGKVDILIGTHRILQKDVV 706

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+++DE+ RFGV+ + +L +   +   L +TATPIPRTL ++ L   DIS +   
Sbjct: 707 FKDLGLLVIDEEQRFGVKDKERLKELKASVDCLTLTATPIPRTLHMSLLKIRDISLLETP 766

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R+PI+T I+  +  + +   ++  +  G + +++  ++E   +            L 
Sbjct: 767 PRERRPIETHILEFSE-EIIARAIRREVERGGQVFYLHNRVETLPQVKTF-----IERLV 820

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 + + HG+MS    E +M  F +G   +L++TT+IE GI++ +A+ III+ A+ +
Sbjct: 821 PEVM--VEVAHGKMSSHQLEEIMHRFIHGGFHVLVSTTIIENGINIPNANTIIIDRADMY 878

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
           G+AQL+QLRGRVGR +  +   L Y     +S+ +  RL V+ +  +   GF +A +DL+
Sbjct: 879 GIAQLYQLRGRVGRSDRTAYAYLFYPAQREISELAAKRLQVIADHTELGAGFKVALKDLE 938

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            R  G +LG +QSG         +++  LL+ A ++
Sbjct: 939 VRGAGNLLGREQSG--DIHSVGFDMYLRLLDEAIRE 972


>gi|153854681|ref|ZP_01995931.1| hypothetical protein DORLON_01929 [Dorea longicatena DSM 13814]
 gi|149752785|gb|EDM62716.1| hypothetical protein DORLON_01929 [Dorea longicatena DSM 13814]
          Length = 1126

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 181/654 (27%), Positives = 304/654 (46%), Gaps = 75/654 (11%)

Query: 23  YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF 82
            +  L++ +   N +     DL         DR       E+    I+T  GYI++   +
Sbjct: 361 RAKRLAEDLRDYNLSSYYSEDL---------DR-------EVKPGEIMTAYGYIAEGYEY 404

Query: 83  QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142
            + K   + ++            F ++ +  K   +EGRKI         ++   +    
Sbjct: 405 PMLK---FTVIAESDI-------FGKRKKKKKRKTYEGRKI---------QSFSELKPGD 445

Query: 143 YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK-IIVEALSRLPVLPEWIEK---DLLQKKS 198
           Y+ H +  V       VY     + VD   K  +  + ++   L  +I     DL+QK  
Sbjct: 446 YVVHENHGVG------VYQGIEKIVVDKISKDYMKISYAQGGNL--YIPATQLDLIQKY- 496

Query: 199 FPSIAEAFNIIHNPRKAK--DFEWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255
                 A      P+  K    EW     + R A  E+    + L   R++   + G   
Sbjct: 497 ------ASADAKKPKLNKLGTQEWNRTKTKVRGAVKEIARDLVKLYAARQE---QDGYVY 547

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
             +    ++     PF  T+ Q  AI+ + +DM     M R++ GDVG GKT VA+ A  
Sbjct: 548 GEDTVWQREFEEMFPFEETEDQMMAIEAVKKDMESHKIMDRLVCGDVGFGKTEVAIRAAF 607

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
            AV+   Q V + P  ILAQQHY    +  ++  + ++++      A ++K +E    G 
Sbjct: 608 KAVQESKQVVYLVPTTILAQQHYRTFVQRMKDFPVRIDLMCRFRTPAQQKKTVEDAKKGL 667

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             IIIGTH +  + +++  L L+I+DE+ RFGVQ + K+ +      VL +TATPIPRTL
Sbjct: 668 VDIIIGTHRVLSEDMKFKDLGLLIIDEEQRFGVQHKEKIKKLKENVDVLTLTATPIPRTL 727

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            ++ +G  D+S + E P  R PI+T ++  N  + V E ++   +   + Y++  ++E+ 
Sbjct: 728 HMSLIGIRDMSVLEEAPNDRMPIQTYVMEYND-EMVREAIERECARQGQVYYVYNRVEDI 786

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E            L      ++A  HG+M + + E +M  F NG   +L++TT+IE G+
Sbjct: 787 DEVAGH-----VQKLVPDL--TVAYAHGQMREHELERIMYDFINGEIDVLVSTTIIETGL 839

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN 613
           D+ +A+ +II +A+  GL+QL+QLRGRVGR   ++   LLY     L + +  RL+ ++ 
Sbjct: 840 DISNANTMIIHDADRLGLSQLYQLRGRVGRSNRMAYAFLLYRRDKMLKEVAEKRLAAIRE 899

Query: 614 TED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             D   GF IA  DL+ R  G +LG +Q G  + +     L+  +L  A K  K
Sbjct: 900 FTDLGSGFKIAMRDLEIRGAGNLLGAEQHGHMEAVGYD--LYCKMLNEAVKQLK 951


>gi|218777910|ref|YP_002429228.1| transcription-repair coupling factor [Desulfatibacillum alkenivorans
            AK-01]
 gi|218759294|gb|ACL01760.1| transcription-repair coupling factor [Desulfatibacillum alkenivorans
            AK-01]
          Length = 1179

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 153/491 (31%), Positives = 236/491 (48%), Gaps = 29/491 (5%)

Query: 179  LSRLPVLPEWIEKD---LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
            L        ++  D   L+QK                 K     W           E +A
Sbjct: 548  LEYRDGDKLYLPVDKSNLIQKYRTMG-----ETAPALEKLGGKAWEKVKSRVKKSVEKIA 602

Query: 236  GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            G++  L   ++ K+      +       +   N  +  T  Q  AI D+L DM  +  M 
Sbjct: 603  GELLKLYAVRKVKQG--YAFSPTDSYFAEFEANFEYEETPDQAKAINDVLADMENRRPMD 660

Query: 296  RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            R++ GDVG GKT VAL A   AV    Q   + P  IL++QHY    K  +   + +  +
Sbjct: 661  RLICGDVGYGKTEVALRASFKAVSDSKQTAFVTPTTILSEQHYRTFLKRYEGYPVKIACL 720

Query: 356  TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
                  A +++ L+ + +G   I+IGTH++ Q S+Q+  L LVI+DE+ RFGV+ +  L 
Sbjct: 721  NRFRKAAEKKEILKGLENGDIDIVIGTHSVLQKSVQFKDLRLVIIDEEQRFGVKHKETLK 780

Query: 416  QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--E 473
            +      VL +TATPIPRTL ++ +G  DI+ I   P  R+PI T +   ++ DEVI  E
Sbjct: 781  KIRATVDVLALTATPIPRTLHMSMVGIRDITVINTPPEQRRPITTYV---SKFDEVIAAE 837

Query: 474  RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
             ++  L+   + +++  +++            R   L     + + + HG+MS+   E V
Sbjct: 838  AIRAELARKGQVFFVHNRVQSIDAMAG-----RLKRLVPE--ARVGVAHGQMSETMLEKV 890

Query: 534  MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            M  F N    LL+ T +IE G+D+  A+ I+I  A+ FGLAQ++QLRGRVGRG++ +   
Sbjct: 891  MIKFVNHEIDLLVCTAIIESGLDIPAANTILINRADMFGLAQIYQLRGRVGRGDDQAYAY 950

Query: 594  LLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
            L       L++++  RL VL    D   GF IA  DL+ R  G ILG  QSG        
Sbjct: 951  LFIPDESVLTRDAQRRLKVLMEHSDLGAGFAIAMSDLQIRGGGTILGSAQSGQI--AAVG 1008

Query: 649  PELHDSLLEIA 659
             E++  L+E A
Sbjct: 1009 YEMYLQLMETA 1019


>gi|227499516|ref|ZP_03929623.1| transcription-repair coupling factor [Anaerococcus tetradius ATCC
            35098]
 gi|227218395|gb|EEI83646.1| transcription-repair coupling factor [Anaerococcus tetradius ATCC
            35098]
          Length = 1170

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 144/451 (31%), Positives = 236/451 (52%), Gaps = 22/451 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
              + AR + A DE+    + L   R + K       + +     +   + P+  T SQ  
Sbjct: 577  QKAKARAKRAVDEIADDLVELYAKRSKIKGH---AFSSDTPWQSEFENSFPYEETYSQIR 633

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            +I +I  DM     M R+L GDVG GKT VA+ A   A+  G Q   + P  ILA QHYE
Sbjct: 634  SIDEIKNDMESDKPMDRLLCGDVGFGKTEVAIRAAFKAIMDGFQVAFLVPTTILANQHYE 693

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             IKK  +   + VE+++   P+A     ++ +  G+  +I+GTH L    + Y  L L+I
Sbjct: 694  TIKKRFEKFPVHVEVLSRFNPKAKNNLIVKELKAGKVDLIVGTHRLLSKDVGYKNLGLLI 753

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV+ + KL +  ++  VL ++ATPIPRTL ++  G  D+S + E P  R P+ 
Sbjct: 754  IDEEQRFGVKHKEKLKELKSSLDVLTLSATPIPRTLQMSLSGIRDLSTLDEAPEERMPVN 813

Query: 460  TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + +I  +   I + IE     L+   + Y++  +I +  E  ++ + +          ++
Sbjct: 814  SYVIEYDSGIIKQAIE---RELNRNGQVYFVYNRINDI-EILYKQIQDLVPE------AN 863

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I+IIHGR+S    E +M  F +G   +L++TT+IE G+D+ + + +I+ +A+  GL QL+
Sbjct: 864  ISIIHGRISPKQIEEIMLDFIDGKIDILLSTTIIETGMDIANVNTMIVYDADTMGLGQLY 923

Query: 578  QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QL+GR+GR    S     Y     LS+ S  RL  +++  D   G+ IA +DL+ R  G 
Sbjct: 924  QLKGRIGRSNRSSYAYFTYRTGKVLSEISEKRLKSIRDFSDFGSGYKIAMKDLELRGAGN 983

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
            +LG  QSG  + +     L+   L+ A + A
Sbjct: 984  LLGESQSGHVEAIGYD--LYVKFLQEAVEKA 1012


>gi|282882197|ref|ZP_06290836.1| transcription-repair coupling factor [Peptoniphilus lacrimalis 315-B]
 gi|281297962|gb|EFA90419.1| transcription-repair coupling factor [Peptoniphilus lacrimalis 315-B]
          Length = 1157

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 137/462 (29%), Positives = 229/462 (49%), Gaps = 17/462 (3%)

Query: 214  KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            K    EW    R+     + +A  +  L   ++ K       + +    ++      +  
Sbjct: 561  KLNSIEWNKTKRKAKKSIDDMADDLIKLYAARESKNG--FKFSKDSSFQREFEDAFIYEE 618

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q  + ++I +DM + + M R+L  DVG GKT VAL A   A+  G Q   + P  IL
Sbjct: 619  TDGQLLSSEEIKKDMEEAHPMDRLLCADVGYGKTEVALRAAFKAILDGKQVAFLVPTTIL 678

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            AQQHY  + +  ++  + V I++    +  +++ +E++  G   I++GTH L    + + 
Sbjct: 679  AQQHYNIMVERFKDFPVEVGILSRFRTKKEQKETIEKLKAGIVDIVVGTHRLLSKDVVFK 738

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L L+I+DE+ RFGV+ + KL         L ++ATPIPRTL ++ +G  D+S I E P 
Sbjct: 739  DLGLLIIDEEQRFGVRHKEKLKMLKENIDTLTLSATPIPRTLQMSMIGIRDMSVIEEPPE 798

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             R P+KT ++  N +  V E +   +  G + Y++  ++     +N    ++    L   
Sbjct: 799  ERFPVKTYVLEYNPL-MVREAILREVERGGQVYFVYNRV-----ANMEYKLQELRELVPE 852

Query: 514  FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               S  + +G+M++ D E  M SF  G   +L+ +T+IE G+DV +A+ +II ++   GL
Sbjct: 853  V--SFVMANGQMNEKDLEDTMLSFLRGDVDVLLCSTIIETGMDVQNANTMIITDSNRLGL 910

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            +QL+QLRGR+GR   ++     Y     +S+ +  RL  +K       GF IA  DL+ R
Sbjct: 911  SQLYQLRGRIGRSSRVAYAYFTYEKDVSISEIAQKRLKTIKEFTEFGSGFKIALRDLEIR 970

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
              G ILG KQ G    +     L+   L  A    K I T++
Sbjct: 971  GSGSILGSKQHGHIDNIGYD--LYMKYLTQAVNKLKGIETRE 1010


>gi|301165394|emb|CBW24965.1| transcription-repair coupling factor [Bacteriovorax marinus SJ]
          Length = 1165

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 146/459 (31%), Positives = 238/459 (51%), Gaps = 18/459 (3%)

Query: 226  ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            +  A +        LL ++ + +   G   +   +  +      PF  T  Q +A+ +++
Sbjct: 574  KSKARNSAKKLAFDLLKLQAERQSSSGYSFSAPDQEYRDFEMAFPFQETPDQINAVNEVI 633

Query: 286  QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            + M +   M  ++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY    K  
Sbjct: 634  ESMQKPIAMDHLVCGDVGFGKTEVAMRAAFKAVLDKKQVCVLVPTTVLALQHYNSFVKRF 693

Query: 346  QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
                + +E ++        ++ +E++  G+  I+IGTH L  D I+Y  L LVIVDE+ R
Sbjct: 694  SKFPVEIEFLSRFKTAKQTKEVIEKLKDGKIDILIGTHKLLSDKIKYQDLGLVIVDEEQR 753

Query: 406  FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            FGV  + KL         L +TATPIPRTL L+ LG  ++S I   P  R+ IK+ +I  
Sbjct: 754  FGVAHKEKLKLLKANVDFLTLTATPIPRTLQLSFLGIREMSLIQTAPPRRQSIKSYLIKE 813

Query: 466  NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
            + +  +   +K  L+ G + + +  ++ +               L     + I   HG+M
Sbjct: 814  DDL-TLQTAIKKELNRGGQVFIVHNKVSDID-----HFSNYIQELVPE--AKIVYAHGQM 865

Query: 526  SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            S+ + E  M +F NGT ++LI+TT+IE GID+ +A+ +II+ A+++GLAQLHQLRGR+GR
Sbjct: 866  SEKELEEKMSAFYNGTYQILISTTIIESGIDIPNANTMIIDRADNYGLAQLHQLRGRIGR 925

Query: 586  GEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
             ++ +    +   H P+S+ +  RL  L+   D   GF IA  DL+ R  G+ILG +QSG
Sbjct: 926  SDKKAYAYFVIPKHKPISEIAQRRLKALQTYADMGSGFNIATCDLEIRGAGDILGAEQSG 985

Query: 641  MPKFLIAQPELHDSLLEIARKDA---KHILTQDPDLTSV 676
                     EL+  LL+ A ++    K ++ QD ++ + 
Sbjct: 986  QIDN--VGLELYMQLLKEAIQELRGEKKLIKQDVEVKTP 1022


>gi|124007360|ref|ZP_01692067.1| transcription-repair coupling factor [Microscilla marina ATCC
           23134]
 gi|123987193|gb|EAY26933.1| transcription-repair coupling factor [Microscilla marina ATCC
           23134]
          Length = 1137

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 146/459 (31%), Positives = 224/459 (48%), Gaps = 19/459 (4%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
            K    EW +  +        +A  +  L  ++  K   G   + +  +  ++  +  + 
Sbjct: 528 HKLGSPEWETKKKRVKKRVLDIAEDLIELYAKR--KSAPGFAFSQDSFLQAELESSFIYE 585

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q  A  D+  DM Q + M R++ GDVG GKT VA+ A   AV  G Q  I+ P  I
Sbjct: 586 DTPDQAKATADVKADMEQNSPMDRLVCGDVGFGKTEVAIRAAFKAVYDGKQVAILVPTTI 645

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA QHY+  K   +     +E I         +  L+ +  G+  I+IGTH +    +Q+
Sbjct: 646 LALQHYKTFKNRLEKFPCNIEYINRFKTSKQIKATLKEVNEGKVDILIGTHRIVNKDVQF 705

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             L L+++DE+ +FGV+ + +L +      VL +TATPIPRTL  + +G  D+S I   P
Sbjct: 706 KDLGLLVIDEEQKFGVKTKERLKEMRVNVDVLTLTATPIPRTLHFSLMGARDLSIIQTPP 765

Query: 453 AGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
             R+P+ T     N  DEVI + +   L  G + +++  ++++             N L 
Sbjct: 766 LNRQPVTTEQHTFN--DEVIRDAISFELRRGGQVFFVHNRVKDIISIAN-------NVLK 816

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               + + + HG+M     E  M  F  G   +LI+T +IE G+DV +A+ III+ A  F
Sbjct: 817 LVPDAHVGVAHGQMEGPKLEKTMMKFIEGEYDVLISTNIIEAGLDVPNANTIIIDMAHTF 876

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLK 626
           GLA LHQ+RGRVGR    + C LL      L+  S  RLS L+      DGF IA  DL 
Sbjct: 877 GLADLHQMRGRVGRSNRKAYCYLLAPASTLLNVESRRRLSALEEFSDLGDGFKIAMRDLD 936

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R  G +LG +QSG    L    E++  +L+ A ++ K 
Sbjct: 937 IRGAGNLLGAEQSGFISDL--GFEMYHKVLDEAIQELKE 973


>gi|238018751|ref|ZP_04599177.1| hypothetical protein VEIDISOL_00609 [Veillonella dispar ATCC 17748]
 gi|237864517|gb|EEP65807.1| hypothetical protein VEIDISOL_00609 [Veillonella dispar ATCC 17748]
          Length = 1098

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 235/464 (50%), Gaps = 18/464 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +     + LA ++  L    Q +   G     +    Q+     P+  T+ Q 
Sbjct: 497 DWAKVVTKAKKSIDDLADKLVDLYA--QREITQGFAFLPDQPWQQEFEDAFPYEETEDQL 554

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A  +I   M +   M R+L GDVG GKT VA+ A+  AV +G Q  ++ P  +LAQQH+
Sbjct: 555 QATAEIKASMEKPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLVPTTVLAQQHF 614

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +          + V+++      A +++ L+ +  G   ++IGTH+L    + +  L ++
Sbjct: 615 QTFLNRFAPFGVKVDVLNRFRSTAEKKQVLKGVEDGSIDVLIGTHSLLNKKVVFKDLGML 674

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ RFGV Q+ K  + A    VL ++ATPIPRTL ++ +G  ++S I   P  R P+
Sbjct: 675 VVDEEQRFGVAQKEKWKEWANNIDVLTLSATPIPRTLHMSLVGVREMSVINTPPEERLPV 734

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  + ++ V + +K  L+ G + Y++  ++          + E           +I
Sbjct: 735 QTYVVEYD-MNLVADAIKRELARGGQVYFVYNRVASIN-----HMGELLEEALPGLRYAI 788

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HG+M+    E +M  F  G   +L++T++IE G+D+ +A+ III +A+  GL+QL+Q
Sbjct: 789 A--HGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQLYQ 846

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           +RGRVGR    +    +Y P   LS+ +  RL  ++   +   GF +A  DL+ R  G +
Sbjct: 847 MRGRVGRSRRRAYAYFMYRPDKMLSEAAEKRLKAIEEFTELGAGFKLAMRDLEIRGAGNL 906

Query: 634 LGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           LG +Q G      F +    L +++ +   K+ +  ++ DP + 
Sbjct: 907 LGSQQHGNIASVGFGMYVSMLEEAIAKAQNKEVEREVSIDPAID 950


>gi|209964568|ref|YP_002297483.1| transcription-repair coupling factor [Rhodospirillum centenum SW]
 gi|209958034|gb|ACI98670.1| transcription-repair coupling factor [Rhodospirillum centenum SW]
          Length = 1209

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 141/448 (31%), Positives = 225/448 (50%), Gaps = 15/448 (3%)

Query: 222  SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
              +R+      L     ALL +  +       P+ V      +     P++ T  Q  AI
Sbjct: 569  WQSRKARVKKRLKDMAAALLRIAAERALRTAPPVAVPDGAWDEFCARFPYAETDDQLHAI 628

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +D+L D+S    M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QHY   
Sbjct: 629  EDVLGDLSSGRPMDRLVCGDVGFGKTEVALRAAFLAVMNGMQVAVVVPTTLLARQHYRTF 688

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            ++      + +  ++         +    +A G   I++GTHAL   S+ + +L +VIVD
Sbjct: 689  EQRFAGLPVRLGQLSRLATAKETAQTKAGLADGTVDIVVGTHALLSKSVDFKRLGMVIVD 748

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+  FGV+Q+ +L +     HVL +TATPIPRTL L   G  ++S I   P  R  ++T 
Sbjct: 749  EEQHFGVKQKERLKELRADIHVLTLTATPIPRTLQLALSGVRELSLIATPPVDRLAVRTF 808

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            ++P + +  + E +      G +++++CP+IE+ +    +        L       + + 
Sbjct: 809  VLPYDPV-VIREAILREHYRGGQSFYVCPRIEDLERVRLQ-----LEELVPEV--KVVVA 860

Query: 522  HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            HG+M     E VM +F      +L+AT +IE G+D+  A+ +++  A+ FGLAQL+Q+RG
Sbjct: 861  HGQMPASQLEEVMTAFDEHKYDVLLATNIIESGLDIPSANTLVVHRADLFGLAQLYQVRG 920

Query: 582  RVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636
            RVGR +      L Y P   LS  +  RL V++  +    GF +A  D+  R  G +LG 
Sbjct: 921  RVGRAKVRGYAYLTYQPRTVLSATAQQRLHVIETLDSLGAGFQLASHDMDIRGAGNLLGE 980

Query: 637  KQSGMPKFLIAQPELHDSLLEIARKDAK 664
            +QSG         EL+  +LE A  DA+
Sbjct: 981  EQSGHI--REVGVELYQQMLEEAVADAR 1006


>gi|167627778|ref|YP_001678278.1| transcription-repair coupling factor [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597779|gb|ABZ87777.1| transcription-repair coupling factor [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 1139

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 137/417 (32%), Positives = 217/417 (52%), Gaps = 13/417 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  + +   G   +++ +   +   + P+  T  Q  AI D+ +DM     M R++ G
Sbjct: 565 LEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETPDQLLAINDVFKDMISAKPMDRLICG 624

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT +A+ A   A +   Q  I+ P  ILAQQHY   K    NT + +E+IT +  
Sbjct: 625 DVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQHYNSFKDRFANTAVNIEVITRSKT 684

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              + +  + +  G   IIIGTH L    I +  L L+I+DE+HRFGV Q+ KL      
Sbjct: 685 AKAQEELFDNLKKGTVDIIIGTHKLISSKIDFNNLGLLIIDEEHRFGVAQKEKLKALKAE 744

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L M+ATPIPR+L +      D+S I   PA R  +KT +   +  + + E +     
Sbjct: 745 IDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDN-NIIREAVSRETI 803

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  +++  ++       E    L       IAI HG+MS+ + + +M  FK+ 
Sbjct: 804 RGGQIFYLYNKVDTIQKKK-----EILQELFPRL--RIAIAHGQMSEKEIQKIMFDFKHN 856

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
              +L+ TT+IE GID+ +A+ +IIE+A + GLAQLHQLRGRVGR    +   +L     
Sbjct: 857 KYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLVPSEG 916

Query: 600 -LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            ++K++  RL  + +T+    GF +A  DL+ R  GEILG +QSG    +     + 
Sbjct: 917 SITKDATKRLEAIGSTDSLGGGFTLANHDLEIRGAGEILGQEQSGNIDGIGLNLYMD 973


>gi|322388485|ref|ZP_08062088.1| transcription-repair coupling factor [Streptococcus infantis ATCC
            700779]
 gi|321140798|gb|EFX36300.1| transcription-repair coupling factor [Streptococcus infantis ATCC
            700779]
          Length = 1167

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 152/500 (30%), Positives = 248/500 (49%), Gaps = 31/500 (6%)

Query: 214  KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            K  D  +    ++     E +A  +  L    +  +  G   + + +         P+  
Sbjct: 558  KLNDGRFKKAKQKVKNQVEDIADDLIKLYA--ERSQLEGFAFSKDDEDQVAFDEAFPYVE 615

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T+ Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 616  TEDQLRSIEEIKKDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNNHKQVVVLVPTTVL 675

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            AQQHY   K+  +   + V++++    +  + + LE++  GQ  I+IGTH +    +++ 
Sbjct: 676  AQQHYSNFKERFEQFAVNVDVLSRFRSKKEQTETLEKLKKGQVDILIGTHRVLSKDVEFS 735

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 736  DLGLIIIDEEQRFGVKHKEALKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 795

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             R P++T ++  N    + + +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 796  NRYPVQTYVLEQNDR-VIRDAVLREIDRGGQVYYLYNKVDTIE--------KKVSELQEL 846

Query: 514  FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 847  IPEASIGFVHGQMSEIRLENTLLDFIEGEYDILVTTTIIETGVDIPNANTLFIENADHMG 906

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
            L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 907  LSTLYQLRGRVGRSNRIAYAYLMYRPDKSLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 966

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA------------RKDAKHILTQDPDLTS 675
            R  G +LG  QSG         EL+  LLE A            + +A+ IL  D  L  
Sbjct: 967  RGAGNLLGSSQSGFID--SVGFELYSQLLEEAIAKKNGTDKKREKGNAELILQIDAYLPD 1024

Query: 676  VRGQSIRILLYLYQYNEAFQ 695
                  R  + +Y+      
Sbjct: 1025 EYISDERHKIEIYKRIRQID 1044


>gi|171463611|ref|YP_001797724.1| transcription-repair coupling factor [Polynucleobacter necessarius
            subsp. necessarius STIR1]
 gi|171193149|gb|ACB44110.1| transcription-repair coupling factor [Polynucleobacter necessarius
            subsp. necessarius STIR1]
          Length = 1181

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 153/472 (32%), Positives = 222/472 (47%), Gaps = 19/472 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+        A ++  L   +  +K      +           +  F  T  Q 
Sbjct: 572  QWGKAKRKAAQQIRDTAAELLGLYAARAIRKGHAFEFSAHD--YAAFAESFGFEETPDQA 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  ++ DM+    M R++ GDVG GKT VAL A   AV  G Q  I+AP  +LA+QH 
Sbjct: 630  NAIAAVIGDMTSGTPMDRLVCGDVGFGKTEVALRASFVAVMGGKQVAILAPTTLLAEQHV 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K    +  + +  ++          AL  IA G+A IIIGTH L     Q+  L LV
Sbjct: 690  ATWKDRFADWPVRIVELSRFKTTKEINVALAAIAKGEADIIIGTHKLLSKETQFANLGLV 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I DE+HRFGV+Q+  L        +L +TATPIPRTL +   G  + S I   P  R  I
Sbjct: 750  IADEEHRFGVRQKDALKALRAEVDILTLTATPIPRTLGMAMEGLREFSIIATAPQKRLAI 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +      D + E +   +  G + Y++  ++E  +             L     + I
Sbjct: 810  KTFVRREGD-DVIREAVLREIKRGGQVYFLHNEVETIQNRKHA-----LQELIPE--ARI 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++ HG+M + + ESVM  F      +L+ TT+IE GIDV  A+ II+  A+ FGLAQLHQ
Sbjct: 862  SVAHGQMHERELESVMREFVTQRTNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQ 921

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSY---TRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL      LSK +      +  ++    GF +A  DL+ R  GE+
Sbjct: 922  LRGRVGRSHHRAYAYLLVPNSEALSKQAQLRLNAIQAMEELGSGFYLAMHDLEIRGAGEV 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG KQSG    +  Q  L+  +L  A K  +    ++ DL S    +  + L
Sbjct: 982  LGDKQSGEIHEIGFQ--LYTEMLNRAVKSLRS--GKESDLLSPLQATTDVNL 1029


>gi|120405727|ref|YP_955556.1| transcription-repair coupling factor [Mycobacterium vanbaalenii
            PYR-1]
 gi|119958545|gb|ABM15550.1| transcription-repair coupling factor [Mycobacterium vanbaalenii
            PYR-1]
          Length = 1212

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 224/449 (49%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +A ++  L  ++Q     G     +    +++     F+ T  Q 
Sbjct: 593  DWANTKTKARKAVREIAAELVALYAKRQA--SAGHAFAPDTPWQREMEDAFGFTETVDQL 650

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 651  TAITEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 710

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +          + V+ ++     A  R  +E +  G   I+IGTH L Q  + +  L LV
Sbjct: 711  QTFTNRMTGFPVTVKGLSRFTDPAESRATIEGMKDGSVDIVIGTHRLLQTGVTWKDLGLV 770

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 771  IVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 830

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   L+  +    +A++I  ++         S   +   L     + +
Sbjct: 831  LTYVGPHDD-KQVAAALRREMLRDGQAFYIHNRVRTID-----SAAAKVRQLVPE--ARV 882

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E  ++ F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 883  VVAHGQMPEEQLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 942

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 943  LRGRVGRSRERGYAYFLYPPEVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNV 1002

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +QSG         +L+  L+  A + 
Sbjct: 1003 LGAEQSGH--VAGVGFDLYVRLVGEAVEA 1029


>gi|71899709|ref|ZP_00681861.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
 gi|71730504|gb|EAO32583.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
          Length = 1195

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 151/488 (30%), Positives = 243/488 (49%), Gaps = 20/488 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +W+   R+       +A ++  +  R+Q +   G
Sbjct: 573  VAQLHLISRYSGASPETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQAR--AG 630

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + ++  + +      PF  T  Q +AI+  L+D+     M R++ GDVG GKT VA+ 
Sbjct: 631  LALRIDRTMYEPFAAGFPFEETPDQLAAIETTLRDLQSSQPMDRVVCGDVGFGKTEVAVR 690

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  I VE+++        +  L++++
Sbjct: 691  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPIRVEVLSRFKSTKEIKAELQKVS 750

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +I+GTH L Q  +++  L LVIVDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 751  EGIMDVIVGTHRLLQPDVKFKDLGLVIVDEEQRFGVRQKEALKSLRANVHLLTLTATPIP 810

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I P +    + E  +  L+ G + Y++   +
Sbjct: 811  RTLNMAMAGLRDLSIIATPPLNRLAVQTFITPWDN-ALLHEAFQRELARGGQLYFLHNDV 869

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +      L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 870  ESIG-----RMQRDLAQLVPE--ARIGIAHGQMPERELERVMLDFQKQHFNVLLSTTIIE 922

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 923  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTADAEKRLEA 982

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  K   
Sbjct: 983  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIKQ-- 1038

Query: 668  TQDPDLTS 675
             + PDL +
Sbjct: 1039 GKLPDLDA 1046


>gi|150007271|ref|YP_001302014.1| putative transcription-repair coupling factor [Parabacteroides
           distasonis ATCC 8503]
 gi|149935695|gb|ABR42392.1| putative transcription-repair coupling factor [Parabacteroides
           distasonis ATCC 8503]
          Length = 1120

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 143/450 (31%), Positives = 225/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        A  + +A  + LL  ++  K+E G     +  +  ++  +  +  T  Q  
Sbjct: 505 WEKMKERTKAKVKDIARDLILLYSKR--KQETGFAYTPDSFMQHELEASFIYEDTPDQMK 562

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  ++  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+
Sbjct: 563 ATAEVKADMESTRPMDRLICGDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQ 622

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++    ++ I+     A  +  L+ +  G+ +I+IGTH +    +++  L L+I
Sbjct: 623 TFCERLKDFPCKIDYISRARTAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLI 682

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S IT  P  R P++
Sbjct: 683 IDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQ 742

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  D + E +   +S   + ++I  +I+   E       E          + +A
Sbjct: 743 TEVERFN-PDIIREAINFEMSRNGQVFFINNRIQNIYEMEALVRREV-------PDARVA 794

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M     E ++  F N    +LIAT+++E GIDV +A+ III NA+ FGL+ LHQL
Sbjct: 795 VGHGQMEPEKLEKIILDFVNHEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQL 854

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR    + C LL  P   L++ +  RL  ++N      G  IA +DL  R  G +L
Sbjct: 855 RGRVGRSNRKAFCYLLSPPLTSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNML 914

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +LE A  + K
Sbjct: 915 GAEQSGFIADL--GYETYQKILEEAVDELK 942


>gi|318041677|ref|ZP_07973633.1| transcription-repair coupling factor [Synechococcus sp. CB0101]
          Length = 1185

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 142/486 (29%), Positives = 240/486 (49%), Gaps = 19/486 (3%)

Query: 198  SFPSIAEAFNIIHNPRKAKDFEWTSPAR-ERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S+         P        T+ ++ +  A   +    + L+ +  +  +  G    
Sbjct: 539  QLGSLGRYRATTEQPPDLNRMGGTAWSKAKERARKAVRKVALDLVKLYAERHQAAGFCFP 598

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             +G    ++  + P+ PT  Q  AI D+ +DM +   M R++ GDVG GKT VA+ A+  
Sbjct: 599  ADGPWQSELEESFPYEPTPDQLKAIADVKRDMEKPQPMDRLVCGDVGFGKTEVAIRAIFK 658

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AV AG Q  ++AP  +LAQQH+  + +      I V ++        R+   E +  G  
Sbjct: 659  AVTAGKQVAMLAPTTVLAQQHWRSLSERFAPYPIKVSLLNRFRTAGERKAIQEGLGEGTV 718

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             +++GTH L      + +L L++VDE+ RFGV Q+ K+        VL ++ATPIPRTL 
Sbjct: 719  DVVVGTHQLLGKGTAFKQLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLY 778

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++  G  ++S IT  P  R+PIKT +  ++  + V   ++  L  G + +++ P++E  +
Sbjct: 779  MSLSGVREMSLITTPPPLRRPIKTHLAALDE-EAVRSAIRQELDRGGQIFYVVPRVEGIE 837

Query: 497  ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                    +    L        + + HG+M++ + ES M +F  G   L++ TT++E G+
Sbjct: 838  --------DVAEGLRLMVPGLRLLVAHGQMAEGELESAMVAFNAGEADLMLCTTIVESGL 889

Query: 556  DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN 613
            D+   + I+IE+A  FGLAQL+QLRGRVGR    +   L Y     LS+ +  RL  ++ 
Sbjct: 890  DIPRVNTILIEDAHKFGLAQLYQLRGRVGRSGIQAHAWLFYPGDASLSEAARQRLRAIQE 949

Query: 614  T---EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHIL 667
                  G+ +A  D++ R  G +LG++QSG  + +        L +SL EI  +D   + 
Sbjct: 950  FAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPAVD 1009

Query: 668  TQDPDL 673
                DL
Sbjct: 1010 DTQIDL 1015


>gi|194364979|ref|YP_002027589.1| transcription-repair coupling factor [Stenotrophomonas maltophilia
            R551-3]
 gi|194347783|gb|ACF50906.1| transcription-repair coupling factor [Stenotrophomonas maltophilia
            R551-3]
          Length = 1154

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 153/501 (30%), Positives = 248/501 (49%), Gaps = 21/501 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +W+   R+       +A ++  +  R+Q +   G
Sbjct: 531  VAQLHLISRYSGASAETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQAR--AG 588

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI   L+D+S    M R++ GDVG GKT VA+ 
Sbjct: 589  LALQVDRAMYEPFAAGFPFEETPDQLAAIDATLRDLSSSQPMDRVVCGDVGFGKTEVAVR 648

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  + VE+++        +  LE++A
Sbjct: 649  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVA 708

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +I+GTH L Q  +++  L +VIVDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 709  AGTIDVIVGTHRLLQPDVKFKDLGMVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIP 768

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I   +    + E  +  L+ G + Y++   +
Sbjct: 769  RTLNMAMAGLRDLSIIATPPPNRLAVQTFITQWDN-ALLREAFQRELARGGQLYFLHNDV 827

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +    + L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 828  ESIG-----RMQRELSELVPE--ARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIE 880

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 881  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVAPDRRSITPDAEKRLEA 940

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  K   
Sbjct: 941  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIKQ-- 996

Query: 668  TQDPDLTS-VRGQSIRILLYL 687
             + PDL +    +   + L++
Sbjct: 997  GKLPDLDAGEEVRGAEVELHV 1017


>gi|309809624|ref|ZP_07703481.1| transcription-repair coupling factor [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170105|gb|EFO72141.1| transcription-repair coupling factor [Lactobacillus iners SPIN
           2503V10-D]
          Length = 1110

 Score =  343 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 135/446 (30%), Positives = 229/446 (51%), Gaps = 19/446 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW           E +A ++  L +      E G     + ++ +    + P+  T  Q 
Sbjct: 510 EWAKTKCRVQEKIEDIADEL--LAIYAHRATEKGFAFLPDDELQRDFEASFPYLETPDQI 567

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AIK+I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P  ILA+QHY
Sbjct: 568 KAIKEIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVPTTILAEQHY 627

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +  ++  + V ++     +    +    +++G+  I++GTH +    I++  L L+
Sbjct: 628 ATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRDIKFKNLGLL 687

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S +   PA R PI
Sbjct: 688 IIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPI 747

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +      + V E     L+   + +++  +I++          ++   L +    + 
Sbjct: 748 QTYV-TEETPNIVREACLRELARNGQIFFLHNKIQDID--------QKVAYLSQLIPEAR 798

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++ENA+ +GL+QL+
Sbjct: 799 IEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLVENADTYGLSQLY 858

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY     L++ S  RL+ +++      GF IA  DL  R  G 
Sbjct: 859 QLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKIAMRDLSIRGAGN 918

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEI 658
           ILG +Q G    +     L+  +L+ 
Sbjct: 919 ILGKQQHGFIDSVGYD--LYAQMLDQ 942


>gi|116750898|ref|YP_847585.1| transcription-repair coupling factor [Syntrophobacter fumaroxidans
            MPOB]
 gi|116699962|gb|ABK19150.1| transcription-repair coupling factor [Syntrophobacter fumaroxidans
            MPOB]
          Length = 1189

 Score =  343 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 148/467 (31%), Positives = 236/467 (50%), Gaps = 23/467 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W +  ++ L   E +A ++  L  ++Q     G   +      QK      +  T  Q  
Sbjct: 592  WETAKKKALESAERVAEELLSLYAKRQ--IGEGFRFSPPDSYFQKFEATFSYEETPDQMR 649

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI D+L DM+ +  M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QHY+
Sbjct: 650  AIDDVLDDMASRRPMDRLICGDVGYGKTEVALRAAFKAVMDGKQVAMLVPTTVLAEQHYQ 709

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +  +   ++VE ++     A +   L+ + +G   +++GTH L Q  + +  L L++
Sbjct: 710  SFTERFEGFPVVVETLSRFKTPAQQTLVLKGLKNGTVDVVVGTHRLLQSDVAFRDLGLLV 769

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+HRFGV+ + ++ +   +  VL +TATPIPRTL +   G  D+S I   P  R  I+
Sbjct: 770  IDEEHRFGVKHKERMKEMRVSVDVLTLTATPIPRTLHMALAGIRDLSTIETPPQDRHAIE 829

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSI 518
            T I   +    + E +   L    + +++   ++        S+ +  N++      + I
Sbjct: 830  TFICKYDEF-TIREAVYRELRRSGQVFFVHNHVQ--------SIYQTANAIGRLIPEAKI 880

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + D E VM  F      +L+ TT+IE G+D+  A+ III  A+ FGLAQ++Q
Sbjct: 881  AVAHGQMKERDLEKVMLDFIRRKIDVLVCTTIIESGLDIPAANTIIINRADKFGLAQIYQ 940

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E +   LL      +S+++  RL  L +  +   GF IA  DL+ R  G I
Sbjct: 941  LRGRVGRSSEQAFAYLLIPGEHLISRDAQKRLRALLDFSELGAGFKIALNDLQIRGGGTI 1000

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ----DPDLTSV 676
            LG  QSG         EL+  LLE   K+ K    +    DP++   
Sbjct: 1001 LGSSQSGHI--AAVGYELYLELLEKTIKEMKGEERETESIDPEINVP 1045


>gi|258593268|emb|CBE69607.1| Transcription-repair-coupling factor (TRCF) (ATP-dependent helicase
            mfd) [NC10 bacterium 'Dutch sediment']
          Length = 1152

 Score =  343 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 148/498 (29%), Positives = 234/498 (46%), Gaps = 28/498 (5%)

Query: 211  NPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
            NP          W        A    +A ++  L   +Q     G  +  +    ++   
Sbjct: 533  NPPTLDRLGSASWAKAKERVKASVREMAQELLALYASRQ--VIKGHALPPDTPWQREFEA 590

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
              P+  T  Q  AI D+  DM +   M R++ GDVG GKT VA+ A    +  G Q  ++
Sbjct: 591  GFPYEETPDQLQAIADVKADMERDRPMDRLICGDVGYGKTEVAMRAAFKTIIGGKQVAVL 650

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +LA QH++   +        VE+++    +  + + L  +  G   I+IGTH L Q
Sbjct: 651  VPTTVLALQHFQTFSERFGGFPAKVEMLSRFRSRKEQSEVLRGVGEGVVDIVIGTHRLLQ 710

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              +++  L L++VDE+HRFGV  + ++ Q      VL +TATPIPRTL ++ LG  DIS 
Sbjct: 711  KDVRFRDLGLLVVDEEHRFGVAAKERMKQLRRQVDVLTLTATPIPRTLHMSMLGVRDIST 770

Query: 448  ITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R  IKT +   +   I E IE     L  G + +++  ++E           +
Sbjct: 771  IETAPDNRLSIKTTVARFDPALIKEAIEH---ELDRGGQVFFVHNRVESI---------Q 818

Query: 506  RFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
                L +     + +A+ HG + +   E +M  F +GT  +L+ TT+IE G+DV  A+ I
Sbjct: 819  GVARLIKQLVPEARLAVAHGELPEERLERIMCDFYDGTFNVLLCTTIIESGLDVSAANTI 878

Query: 564  IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGF 618
            II+ A+  GLAQL+QLRGRVGR +  +   LL      LS+ +  RL V+        GF
Sbjct: 879  IIDRADALGLAQLYQLRGRVGRDKHRAYAYLLVPKDAALSETAKKRLQVIAELTELGSGF 938

Query: 619  LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRG 678
             +A  DL+ R  G +LG +Q G         +L+  L+E   K+ K     +P    +R 
Sbjct: 939  KVAARDLEIRGTGNLLGPEQHGQI--AAVGIDLYCRLIESTVKELKGQAVAEPVEPVIRL 996

Query: 679  QSIRILLYLYQYNEAFQF 696
            ++   L  +Y  +   + 
Sbjct: 997  EAEGYLPEIYIEDSNVRL 1014


>gi|51244134|ref|YP_064018.1| transcription-repair coupling factor [Desulfotalea psychrophila
            LSv54]
 gi|50875171|emb|CAG35011.1| related to transcription-repair coupling factor [Desulfotalea
            psychrophila LSv54]
          Length = 1184

 Score =  343 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 143/483 (29%), Positives = 246/483 (50%), Gaps = 16/483 (3%)

Query: 194  LQKKSFPSIAEAF-NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + + +  S  +   +      K     W +  ++       +A ++  +  +++ K   G
Sbjct: 548  VDRLNLVSRYQGISDREPRIDKLGSQNWRNTTKKVKEEVWKVAHELLEIYAKRELK--AG 605

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
                  G++ Q++  + PF  T  Q +AI  +L D++  N M R++ GDVG GKT VA+ 
Sbjct: 606  RAFAPPGQLYQELEESFPFDETAGQLAAINSVLDDLTDANPMDRLVCGDVGYGKTEVAIR 665

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                 VE G QA I+ P  +LA+QH +  ++  QN  + +E +        +R+ ++ +A
Sbjct: 666  GAFKVVEDGAQAAILVPTTVLAEQHLKTFRERLQNFPLRIECLNRFRTAKEQREIVKDLA 725

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G+  I+IGTH L    +Q+  L L+I+DE+HRFGV  + +L +      +L +TATPIP
Sbjct: 726  AGKIDIVIGTHRLLSKDVQFKDLGLLIIDEEHRFGVAHKERLRKMRAEVDILTLTATPIP 785

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL ++ L   D+S I+  P  R+P+KT +   + +  + E +   L    + +++  ++
Sbjct: 786  RTLQMSLLSIRDLSVISSPPEQRRPVKTFVAEDDDL-VIKEAISRELRRKGQTFFVHNRV 844

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            +   +   +        L     + IA+ HG+M   + E++M SF N    +L+ATT+IE
Sbjct: 845  KSIYQIANK-----IEKLVPD--ARIAVAHGQMDTKELENIMVSFVNKEVDVLVATTIIE 897

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSV 610
             G+D+  A+ +II  A++ GLA+++QLRGRVGR    S   LL      +SK+S  RL  
Sbjct: 898  SGLDIPSANTMIINRADNLGLAEMYQLRGRVGRSSTQSFAYLLVPSLDSISKDSRERLRA 957

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            L    +   GF +A  DL+ R  G +LGI QSG    +     L      +A   A+ + 
Sbjct: 958  LMECNELGGGFKLAMNDLQIRGGGNLLGISQSGNIAAIGYDLYLDLLQKTVADLKAQKLS 1017

Query: 668  TQD 670
             ++
Sbjct: 1018 QEE 1020


>gi|332077813|gb|EGI88272.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA41301]
          Length = 1171

 Score =  343 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 147/452 (32%), Positives = 232/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ + + + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNTNTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|41407085|ref|NP_959921.1| hypothetical protein MAP0987 [Mycobacterium avium subsp.
            paratuberculosis K-10]
 gi|41395436|gb|AAS03304.1| Mfd [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 1221

 Score =  343 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 138/472 (29%), Positives = 233/472 (49%), Gaps = 15/472 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +AG++  L  ++Q     G   + +     ++     ++ T  Q 
Sbjct: 594  DWANTKTKARRAVREIAGELVSLYAKRQA--SPGHAFSPDTPWQAEMEDAFGYTETVDQL 651

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 652  TAITEVKSDMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 711

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +          + V+ ++     A  R  +E +A G   I+IGTH L Q  +++  L LV
Sbjct: 712  QTFTDRMAGFPVTVKGLSRFTDAAESRAVIEGLADGSVDIVIGTHRLLQTGVRWKDLGLV 771

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 772  VVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 831

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   L+  L    +A+++  ++             R   L       +
Sbjct: 832  LTYVGPHDD-KQVAAALRRELLRDGQAFYVHNRVSSID-----RAAARVRELVPEARVVV 885

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 886  VVAHGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 945

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 946  LRGRVGRSRERGYAYFLYPPHAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNV 1005

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG++QSG         +L+  L+  A +  +         T+   + +RI L
Sbjct: 1006 LGVEQSGH--VAGVGFDLYVRLVGEAVEAYRAAADGQTVTTAEEPKDVRIDL 1055


>gi|194333600|ref|YP_002015460.1| transcription-repair coupling factor [Prosthecochloris aestuarii
           DSM 271]
 gi|194311418|gb|ACF45813.1| transcription-repair coupling factor [Prosthecochloris aestuarii
           DSM 271]
          Length = 1120

 Score =  343 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 135/467 (28%), Positives = 234/467 (50%), Gaps = 21/467 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +   +       +A ++  L  ++  K   G     +    ++   +  F  T  Q  
Sbjct: 486 WKARKDKVKKRLRDIASELIKLYAKR--KMTPGFAFGQDSIFQREFEASFIFDETPDQLK 543

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+++ +DM     M R++ GD G GKT +A+ A   AVE+  Q  ++ P  ILA QH E
Sbjct: 544 AIEEVKKDMQSPFPMDRLICGDAGFGKTEIAMRAAFKAVESSKQVAVLTPTTILAHQHME 603

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +N  + + +++  + ++ ++K +  ++ G   I+IGTH L    + +  L L++
Sbjct: 604 TFTRRFENFPVNIAVLSRFVSKSDQKKIVHDLSKGLIDIVIGTHRLVSKDVVFQDLGLLV 663

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+  FGV  + KL Q   +   L M+ATPIPRTL  + LG  D+S ++  P  R+P++
Sbjct: 664 IDEEQHFGVSVKEKLRQTFPSVDTLTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQPVE 723

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T+I   +  D +   ++  ++   + + +  +I   +E       +    L       +A
Sbjct: 724 TMITTFD-TDLLQSAIRTEINRKGQVFVLHNRIAGLEEMK-----QTLQELVPGV--RMA 775

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG+M   + E++M  F      +LI+T++I  G+D+ +A+ III  A+ FGL+ L+QL
Sbjct: 776 YAHGQMPTAELENIMMDFITHELDVLISTSIIGSGLDISNANTIIINRADMFGLSDLYQL 835

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR +  +   L+  P   L +++  RL+V++       GF IA  DL  R  G +L
Sbjct: 836 RGRVGRSDRKAYSYLITPPIQTLKQDAIQRLAVIESFTELGSGFNIAMRDLDIRGAGNLL 895

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKD----AKHILTQDPDLTSVR 677
           G +QSG    L     L+  LLE A  +    A   L  D D +++R
Sbjct: 896 GSEQSGAIHELGFN--LYQKLLEEAVAELKTGAFSSLFSDNDQSTIR 940


>gi|315653944|ref|ZP_07906860.1| transcriptional repair coupling factor [Lactobacillus iners ATCC
           55195]
 gi|315488640|gb|EFU78286.1| transcriptional repair coupling factor [Lactobacillus iners ATCC
           55195]
          Length = 1110

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 135/446 (30%), Positives = 229/446 (51%), Gaps = 19/446 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW           E +A ++  L +      E G     + ++ +    + P+  T  Q 
Sbjct: 510 EWAKTKCRVQEKIEDIADEL--LAIYAHRATEKGFAFLPDDELQRDFEASFPYLETPDQI 567

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AIK+I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P  ILA+QHY
Sbjct: 568 KAIKEIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVPTTILAEQHY 627

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +  ++  + V ++     +    +    +++G+  I++GTH +    I++  L L+
Sbjct: 628 ATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRDIKFKNLGLL 687

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S +   PA R PI
Sbjct: 688 IIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPI 747

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +      + V E     L+   + +++  +I++          ++   L +    + 
Sbjct: 748 QTYV-TEETPNIVREACLRELARNGQIFFLHNKIQDID--------QKVAYLSQLIPEAR 798

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++ENA+ +GL+QL+
Sbjct: 799 IEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLVENADTYGLSQLY 858

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY     L++ S  RL+ +++      GF IA  DL  R  G 
Sbjct: 859 QLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKIAMRDLSIRGAGN 918

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEI 658
           ILG +Q G    +     L+  +L+ 
Sbjct: 919 ILGKQQHGFIDSVGYD--LYAQMLDQ 942


>gi|226365233|ref|YP_002783016.1| transcription-repair coupling factor [Rhodococcus opacus B4]
 gi|226243723|dbj|BAH54071.1| transcription-repair coupling factor [Rhodococcus opacus B4]
          Length = 1215

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 231/472 (48%), Gaps = 17/472 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +AG++  L   +Q     G     +    +++     F+ T  Q 
Sbjct: 601  DWANTKRKARKAVREIAGELVQLYAARQAA--PGHAFGPDTPWQKEMEDAFAFTETHDQL 658

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 659  TVISEVKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHL 718

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        ++ +  +A G+  +++GTH L Q ++++  L LV
Sbjct: 719  QTFTERMAAFPVKVRGLSRFTDAGESKEIVAGMADGEIDVVVGTHRLLQTAVRWKDLGLV 778

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 779  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPI 838

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L    + +++  ++            +R   L     + +
Sbjct: 839  LTYVGAYAD-KQVAAAIRRELLRDGQVFYVHNRVSSID-----KAAQRIRELVPE--ARV 890

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++   E  +  F      +L+ TT+IE G+D+ +A+ +I+E A+  GL+QLHQ
Sbjct: 891  VVAHGQMNEDTLERTVQGFWERDYDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQ 950

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    D   G  +A +DL+ R  G +
Sbjct: 951  LRGRVGRSRERGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNV 1010

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG +QSG         +L+  L+  A +  +      P  T    + +RI L
Sbjct: 1011 LGAEQSGH--VAGVGFDLYVRLVGEAVEAFRAAADGKPITTDDAPKEVRIDL 1060


>gi|312874973|ref|ZP_07734992.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2053A-b]
 gi|311089718|gb|EFQ48143.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2053A-b]
          Length = 1110

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 135/446 (30%), Positives = 229/446 (51%), Gaps = 19/446 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW           E +A ++  L +      E G     + ++ +    + P+  T  Q 
Sbjct: 510 EWAKTKCRVQEKIEDIADEL--LAIYAHRATEKGFAFLPDDELQRDFEASFPYLETPDQI 567

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AIK+I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P  ILA+QHY
Sbjct: 568 KAIKEIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVPTTILAEQHY 627

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +  ++  + V ++     +    +    +++G+  I++GTH +    I++  L L+
Sbjct: 628 ATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRDIKFKNLGLL 687

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S +   PA R PI
Sbjct: 688 IIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPI 747

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +      + V E     L+   + +++  +I++          ++   L +    + 
Sbjct: 748 QTYV-TEETPNIVREACLRELARNGQIFFLHNKIQDID--------QKVAYLSQLIPEAR 798

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++ENA+ +GL+QL+
Sbjct: 799 IEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLVENADTYGLSQLY 858

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY     L++ S  RL+ +++      GF IA  DL  R  G 
Sbjct: 859 QLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKIAMRDLSIRGAGN 918

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEI 658
           ILG +Q G    +     L+  +L+ 
Sbjct: 919 ILGKQQHGFIDSVGYD--LYAQMLDQ 942


>gi|189501723|ref|YP_001957440.1| hypothetical protein Aasi_0272 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497164|gb|ACE05711.1| hypothetical protein Aasi_0272 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 1123

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 136/452 (30%), Positives = 231/452 (51%), Gaps = 19/452 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +     +++A ++  L  ++  K   G   + +  +  ++  +  +  T  Q S
Sbjct: 512 WEQKKSKVKHKVQVIAKELIQLYSKR--KYAPGFAFSKDTFLQAEMESSFIYEDTPDQAS 569

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+ +DM   + M R++ GDVG GKT VA+ A   AV    Q  ++ P  ILA QHYE
Sbjct: 570 ATADVKKDMEAPHPMDRLVCGDVGFGKTEVAIRAAFKAVYDRKQVAVLVPTTILALQHYE 629

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    N  + V+ +     +   ++  E  A G+  I+IGTH +   + ++  L L++
Sbjct: 630 SFKNRLSNFPVDVKYVNRFKSKQEIKRIQEAAAQGKIDILIGTHTILGKAFEFKDLGLLV 689

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV+ + ++ +      VL +TATPIPRTL  + +G  D+S I   P+ R+P++
Sbjct: 690 VDEEQKFGVKAKDRIKEFKVNVDVLTLTATPIPRTLHFSLMGARDLSIIATPPSNRQPVQ 749

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T I   ++   V + +   +  G + +++  +I         ++ E  N L++      I
Sbjct: 750 TSIHTFDK-KIVQDAIHYEVQRGGQVFFVHNRIN--------NIQEVANMLYKLVPEYRI 800

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I HG+M     E  M +F  G   +L++T +IE G+D+ +A+ III ++  FGL+ LHQ
Sbjct: 801 GIAHGQMDGDQLEKKMLTFIAGGYDILVSTNIIESGLDIPNANTIIINDSHMFGLSDLHQ 860

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           +RGRVGR  + + C L+  P   L++ +  RLS L+      DGF +A  DL  R  G +
Sbjct: 861 MRGRVGRSNKKAFCYLIAPPNSSLTEEARKRLSTLEEFTELGDGFKVAMRDLDIRGAGNL 920

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           LG +QSG         E +  +L+ A ++ K 
Sbjct: 921 LGAEQSGFIAD--VGFEAYCKILDEAVQELKE 950


>gi|126696368|ref|YP_001091254.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9301]
 gi|126543411|gb|ABO17653.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9301]
          Length = 1169

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 140/485 (28%), Positives = 246/485 (50%), Gaps = 18/485 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     + +A  I  L  +++  K    P   +G    ++  + P+ PT  Q 
Sbjct: 562  EWERIKDKNKKQIKKVAVDILKLYAKREKLKGHIYP--EDGPWQDELEESFPYQPTPDQI 619

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +A+K+I  DM     M R++ GDVG GKT VA+ A+  A+ +G Q + +AP  ILAQQH+
Sbjct: 620  TAVKEIKSDMESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQVIFLAPTTILAQQHW 679

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              I        I V ++        RR+    + + +  +++ TH +    I+   L L+
Sbjct: 680  RTINNRFSPYPIKVSLLNRFKSINERREIYAGLKNNKIDLVVATHQILGKEIEIKNLGLL 739

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+Q+ K+ +  T   VL ++ATPIPRTL ++  G   +S +   P  R+ I
Sbjct: 740  VIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRSI 799

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT +  I+ +D +   +   L  G + +++ P+I +         +++  ++  +    +
Sbjct: 800  KTYLSEID-MDVIRTAINKELDRGGQIFYVLPRISDID-----QAIDKLKNMIPNLKFIV 853

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++ + E+ M +F NG   L+I TT+IE G+D+   + IIIE++  FGL+QL+Q
Sbjct: 854  A--HGQMNETELENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHKFGLSQLYQ 911

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L Y     ++  +  RL  +K       G+ +A +D++ R  G +
Sbjct: 912  LRGRVGRSGVQAHAWLFYPNINKINDAAKQRLKAIKDFSELGSGYQLAMKDMEIRGVGSL 971

Query: 634  LGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            LG +QSG    +        LH+++ EI+ ++   +     DL          +L   + 
Sbjct: 972  LGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEVNDTQIDLPINAFIPATWILNREEK 1031

Query: 691  NEAFQ 695
             EA++
Sbjct: 1032 LEAYK 1036


>gi|304440475|ref|ZP_07400363.1| transcription-repair coupling factor [Peptoniphilus duerdenii ATCC
            BAA-1640]
 gi|304371041|gb|EFM24659.1| transcription-repair coupling factor [Peptoniphilus duerdenii ATCC
            BAA-1640]
          Length = 1148

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 226/468 (48%), Gaps = 18/468 (3%)

Query: 214  KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            K    +W     +     E +A  +  L  ++      G   + +     +      +  
Sbjct: 556  KLSSKDWQKQKSKAKKAVEEMAKYLIELYAKRANA--KGFAFSEDTPWQGEFEDAFIYEE 613

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T+ Q +AIK+I +DM     M R+L  DVG GKT VA+ A   AV  G Q  ++ P  IL
Sbjct: 614  TEGQLNAIKEIKEDMESPTPMDRLLCADVGYGKTEVAIRAAFKAVMDGKQVAVLVPTTIL 673

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            AQQHY    +  ++  + + + +    +    K ++ +  G   I IGTH L    +++ 
Sbjct: 674  AQQHYNTFVERFKDFPVSISVFSRFRTKKEIDKDIDDLKKGFIDIAIGTHRLLSKDVKFK 733

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L L+IVDE+ RFGV+ +  L     +   L +TATPIPRTL ++ +G  D+S I E P 
Sbjct: 734  DLGLIIVDEEQRFGVRHKETLKLLKESVDSLTLTATPIPRTLQMSMIGIRDMSVIEEPPE 793

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             R PI+T +   N +  + E +   +  G + Y++  ++   +E   +        L   
Sbjct: 794  ERFPIQTYVTEENDM-LIREAILKEIERGGQVYYVSNRVSNMEEILLK-----LKKLVPE 847

Query: 514  FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              ++  I +G+MS+   E  M SF N    +LI +T+IE G+DV +A+ +I+  +   GL
Sbjct: 848  --ATFGIANGQMSERVLEDTMLSFINQEIDVLICSTIIETGMDVPNANTMIVTESNRLGL 905

Query: 574  AQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            +QL+QLRGR+GR   ++     Y  +  +S+ +  RL  +K       G+ IA  DL+ R
Sbjct: 906  SQLYQLRGRIGRSNRLAYVYFTYRKNTEISEIASKRLKSIKEFTEFGSGYKIAMRDLEIR 965

Query: 629  KEGEILGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHILTQDPDL 673
              G ILG KQ G  + +        L D++ E+  ++ K  +    DL
Sbjct: 966  GSGSILGEKQHGHIESIGYDLYIKYLKDAVKELKGEEVKEEVDTVVDL 1013


>gi|299141509|ref|ZP_07034645.1| transcription-repair coupling factor [Prevotella oris C735]
 gi|298576845|gb|EFI48715.1| transcription-repair coupling factor [Prevotella oris C735]
          Length = 1139

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 157/584 (26%), Positives = 258/584 (44%), Gaps = 41/584 (7%)

Query: 94  LNDGTGEITLLFFYRKT---EMLKNVFFE-GRKITVTGKIKKLKNRIIMVHP-HYIFHNS 148
             D    + L FF          K      G +    GK+      +  + P  +I H  
Sbjct: 406 FTDD--ALKLCFFTDHQIFDRYHKYNLKSDGARA---GKMALTMKELQEMEPGDFIVHV- 459

Query: 149 QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
            D        +  +P G S     +II +   ++ V    + K  + K       E    
Sbjct: 460 -DFGIGKFGGLVRVPAGNSYQEMIRIIYQHNDKVDVSIHSLYK--ISKYRRADTGE---- 512

Query: 209 IHNPRKAKDFEWTSPAR---ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI 265
              P +       +  R   +     + +A  +  L    Q + E G   + +  +  ++
Sbjct: 513 ---PPRLSTLGTGAWDRLKEKTKKRIKDIARDLIKLYA--QRRHEKGYAFSGDSYLQHEL 567

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
             +  +  T  Q  A +D+  DM  +  M R++ GDVG GKT VA+ A   A     Q  
Sbjct: 568 EASFLYEDTPDQSKATQDVKADMESQRPMDRLVCGDVGFGKTEVAVRAAFKAACDSKQVA 627

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P  +LA QHY+  K   +   + V+ ++        ++ L  +  G+  I+IGTH L
Sbjct: 628 VLVPTTVLAYQHYQTFKNRLKGMPVRVDYLSRARSAKQTKQVLTDLEDGKIDILIGTHKL 687

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
              S++++ L L+I+DE+ +FGV  + KL +  T    L M+ATPIPRTL  + +G  D+
Sbjct: 688 LGKSVKWHDLGLLIIDEEQKFGVSTKEKLRKMKTNVDTLTMSATPIPRTLQFSLMGARDM 747

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I   P  R PI T +   +  + + + +   +S   + Y++  +I   +E        
Sbjct: 748 SIIRTPPPNRYPIHTELATFSH-EVIADAINFEMSRNGQVYFVHDRINGLQEIANLIH-- 804

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                       +AI HG+M     E V+  F N    +L++TT++E GID+ +A+ +II
Sbjct: 805 -----KYVPDCRVAIGHGQMPPDKLEKVLMGFMNYDYDVLLSTTIVENGIDISNANTMII 859

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLI 620
            +A  FGL+ LHQ+RGRVGR    + C LL  P   L+  +  RL  L+N      GF +
Sbjct: 860 NDAHRFGLSDLHQMRGRVGRSNRKAFCYLLAPPKTSLTPEARRRLEALENFSELGSGFDL 919

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           A +DL  R  G +LG +QSG  + L    E +  +L  A  + K
Sbjct: 920 AMQDLDIRGAGNLLGAEQSGFMEDL--GYETYQKILSQAVTELK 961


>gi|21673485|ref|NP_661550.1| transcription-repair coupling factor [Chlorobium tepidum TLS]
 gi|21646591|gb|AAM71892.1| transcription-repair coupling factor [Chlorobium tepidum TLS]
          Length = 1113

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 133/478 (27%), Positives = 243/478 (50%), Gaps = 19/478 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W++           +A ++  +  ++  K   G     +    ++   +  F  T  Q  
Sbjct: 497 WSAKKERVRKKLRDIAAKLIRVYAKR--KMTPGFAFGPDSIFQREFEASFMFEETPDQLK 554

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+++ +DM   + M R++ GD G GKT +A+ A   AVE   Q  I+ P  IL  QH E
Sbjct: 555 AIQEVKKDMQSPSPMDRLICGDAGFGKTEIAMRAAFKAVENKKQVAILTPTTILTHQHGE 614

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +   N  + + +++  +P+  +++ +ERIA G   I+IGTH L    + +  L L++
Sbjct: 615 SFARRFANFPVNIAVLSRFVPRKEQKETIERIASGAMDIVIGTHRLVSKDVVFKDLGLLV 674

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+  FGV+ + KL  +      L M+ATPIPRT+  + LG  DIS ++  P  R+P++
Sbjct: 675 IDEEQHFGVEVKEKLRHQFPGVDTLTMSATPIPRTMQFSMLGARDISIVSTPPKNRQPVE 734

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T+I   +  + V   +K  +    + +++  +I   +E+  +        L  +  + +A
Sbjct: 735 TIITEFD-PETVRAAIKREIQREGQVFFLHNRITSLEETALK-----LRELVPY--ARMA 786

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG+M   + E+VM  F      +LI+T++I  G+D+ +A+ III  A+ FGL+ L+QL
Sbjct: 787 TAHGQMPAKELENVMMDFMQQELDVLISTSIIGSGLDISNANTIIINRADMFGLSDLYQL 846

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR E  + C L+  P   L + +  R++V++       G  +A  DL  R  G +L
Sbjct: 847 RGRVGRSERKAYCYLITPPLHTLKREAVQRIAVIETFTELGSGINVALRDLDIRGAGNLL 906

Query: 635 GIKQSGM---PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           G +QSG      F + Q  + +++ E+   +  H+ + D +  +++ Q    +++ + 
Sbjct: 907 GAEQSGFIHEIGFDLYQKMIEETVAELKLTEFNHLFS-DSEKAALKPQRPCDMIFFFD 963


>gi|254522423|ref|ZP_05134478.1| transcription-repair coupling factor [Stenotrophomonas sp. SKA14]
 gi|219720014|gb|EED38539.1| transcription-repair coupling factor [Stenotrophomonas sp. SKA14]
          Length = 1154

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 151/501 (30%), Positives = 248/501 (49%), Gaps = 21/501 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +W+   R+       +A ++  +  R+Q +   G
Sbjct: 531  VAQLHLISRYSGASAETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQAR--AG 588

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI   L+D++    M R++ GDVG GKT VA+ 
Sbjct: 589  LALQVDRAMYEPFAAGFPFEETPDQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVR 648

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QH+   +    +  + VE+++        +  LE++A
Sbjct: 649  AAFAAASAGKQVAVLVPTTLLAEQHFRNFRDRFADYPMKVEVLSRFKTSKEIKAELEKVA 708

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +I+GTH L Q  +++  L +VIVDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 709  AGTIDVIVGTHRLLQPDVKFKDLGMVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIP 768

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I   +    + E  +  L+ G + Y++   +
Sbjct: 769  RTLNMAMAGLRDLSIIATPPPNRLAVQTFITQWDN-ALLREAFQRELARGGQLYFLHNDV 827

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +    + L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 828  ESIG-----RMQRELSELVPE--ARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIE 880

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 881  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVAPDRRSITPDAEKRLEA 940

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  K   
Sbjct: 941  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIKQ-- 996

Query: 668  TQDPDLTS-VRGQSIRILLYL 687
             + PDL +    +   + L++
Sbjct: 997  GKLPDLDAGEEVRGAEVELHV 1017


>gi|254774025|ref|ZP_05215541.1| hypothetical protein MaviaA2_05024 [Mycobacterium avium subsp. avium
            ATCC 25291]
          Length = 1201

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 138/472 (29%), Positives = 234/472 (49%), Gaps = 17/472 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +AG++  L  ++Q     G   + +     ++     ++ T  Q 
Sbjct: 576  DWANTKTKARRAVREIAGELVSLYAKRQA--SPGHAFSPDTPWQAEMEDAFGYTETVDQL 633

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 634  TAITEVKSDMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 693

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +          + V+ ++     A  R  +E +A G   I+IGTH L Q  +++  L LV
Sbjct: 694  QTFTDRMAGFPVTVKGLSRFTDAAESRAVIEGLADGSVDIVIGTHRLLQTGVRWKDLGLV 753

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 754  VVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 813

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   L+  L    +A+++  ++             R   L     + +
Sbjct: 814  LTYVGPHDD-KQVAAALRRELLRDGQAFYVHNRVSSID-----RAAARVRELVPE--ARV 865

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 866  VVAHGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 925

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 926  LRGRVGRSRERGYAYFLYPPHAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNV 985

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG++QSG         +L+  L+  A +  +         T+   + +RI L
Sbjct: 986  LGVEQSGH--VAGVGFDLYVRLVGEAVEAYRAAADGQTVTTAEEPKDVRIDL 1035


>gi|157413397|ref|YP_001484263.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9215]
 gi|157387972|gb|ABV50677.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9215]
          Length = 1169

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 138/464 (29%), Positives = 238/464 (51%), Gaps = 18/464 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  + +K  G     +G    ++  + P+ PT  Q +A+++I  DM     M R++ G
Sbjct: 582  LKLYAKREKLKGYIYPEDGPWQDELEESFPYQPTPDQITAVEEIKSDMESDKPMDRLVCG 641

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VA+ A+  A+ +G Q +++AP  ILAQQH+  I        I V ++     
Sbjct: 642  DVGFGKTEVAVRAIFKAITSGKQVILLAPTTILAQQHWRTINNRFSPYPIKVSLLNRFKT 701

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               R++    + + +  +++ TH +    I+   L L+++DE+ RFGV+Q+ K+ +  T 
Sbjct: 702  VNERKEIYAGLKNNKIDLVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTN 761

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL ++ATPIPRTL ++  G   +S +   P  R+ IKT +  I+ +D +   +   L 
Sbjct: 762  IDVLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRSIKTYLSEID-MDVIRTAINQELD 820

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
             G + +++ P+I +          +  N L   F S    + HG+M++ D E+ M +F N
Sbjct: 821  RGGQIFYVLPRISDID--------QAVNKLKIMFPSLKFIVAHGQMNETDLENAMIAFNN 872

Query: 540  GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH-- 597
            G   L+I TT+IE G+D+   + IIIE++  FGL+QL+QLRGRVGR    +   L Y   
Sbjct: 873  GEVDLMICTTIIESGLDIPKVNTIIIEDSHKFGLSQLYQLRGRVGRSGVQAHAWLFYPNI 932

Query: 598  PPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP---EL 651
              ++  +  RL  +K       G+ +A +D++ R  G +LG +QSG    +        L
Sbjct: 933  NKINDAAKQRLKAIKDFSELGSGYQLAMKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEML 992

Query: 652  HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
            H+++ EI+ ++   +     DL          +L   +  EA++
Sbjct: 993  HEAISEISGQEIPEVNDTQIDLPINAFIPATWILNREEKLEAYK 1036


>gi|194337173|ref|YP_002018967.1| transcription-repair coupling factor [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309650|gb|ACF44350.1| transcription-repair coupling factor [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 1103

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 143/460 (31%), Positives = 238/460 (51%), Gaps = 19/460 (4%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P  +K       A++     +L    I L+ +  Q K +IG     +    ++   +  F
Sbjct: 471 PALSKLGSSKWAAKKDKVRKQLRDIAINLIKVYAQRKMQIGFGFAPDSIYMREFEASFIF 530

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q  AI D+ +DM + + M R++ GD G GKT +A+ A   AVE+G Q  ++ P  
Sbjct: 531 DETPDQLKAIHDVKKDMQEPHPMDRLICGDAGFGKTEIAMRAAFKAVESGKQVAVLTPTT 590

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           IL+ QH E   +  +N  I + +++  +P+  ++K ++RIA G   I+IGTH L    + 
Sbjct: 591 ILSHQHAESFTRRFENFPISIAVLSRFVPRKEQQKVIKRIAEGTIDIVIGTHRLVSKDVL 650

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+++DE+  FGV+ + KL ++      L M+ATPIPRTL  + LG  D+S ++  
Sbjct: 651 FKDLGLLVIDEEQHFGVEVKEKLREQFPGVDTLTMSATPIPRTLQFSMLGARDLSIVSTP 710

Query: 452 PAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           P  R+P++T+I   +    +I+  ++  +    + +++  +I         S+ +   +L
Sbjct: 711 PKNRQPVETLITDYD--PALIQSAIRREIKREGQVFFLHNRI--------ASLDDILQTL 760

Query: 511 HEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            E    + I   HG++   + E +M  F      +LI+TT+I  G+D+ +A+ III  A+
Sbjct: 761 RELVPSARIVFAHGQLPPRELEKIMMDFMQKEVDVLISTTIIGSGLDISNANTIIINRAD 820

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEED 624
            FGL+ L+QLRGRVGR E  + C L+  P   L K +  RL+V++       GF IA  D
Sbjct: 821 MFGLSDLYQLRGRVGRSERKAYCYLIAPPLNTLKKEAVQRLAVIESFTELGSGFNIALRD 880

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           L  R  G +LG +QSG    L     L+  +LE    + K
Sbjct: 881 LDIRGAGNLLGAEQSGYIHELGFD--LYQKMLEETVAELK 918


>gi|301310728|ref|ZP_07216667.1| transcription-repair coupling factor [Bacteroides sp. 20_3]
 gi|300832302|gb|EFK62933.1| transcription-repair coupling factor [Bacteroides sp. 20_3]
          Length = 1120

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 143/450 (31%), Positives = 225/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        A  + +A  + LL  ++  K+E G     +  +  ++  +  +  T  Q  
Sbjct: 505 WEKMKERTKAKVKDIARDLILLYSKR--KQETGFAYTPDSFMQHELEASFIYEDTPDQMK 562

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  ++  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+
Sbjct: 563 ATAEVKADMESTRPMDRLICGDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQ 622

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++    ++ I+     A  +  L+ +  G+ +I+IGTH +    +++  L L+I
Sbjct: 623 TFCERLKDFPCKIDYISRARTAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLI 682

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S IT  P  R P++
Sbjct: 683 IDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQ 742

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  D + E +   +S   + ++I  +I+   E       E          + +A
Sbjct: 743 TEVERFN-PDIIREAINFEMSRNGQVFFINNRIQNIYEMEALVRREV-------PDARVA 794

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M     E ++  F N    +LIAT+++E GIDV +A+ III NA+ FGL+ LHQL
Sbjct: 795 VGHGQMEPEKLEKIILDFVNYEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQL 854

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR    + C LL  P   L++ +  RL  ++N      G  IA +DL  R  G +L
Sbjct: 855 RGRVGRSNRKAFCYLLSPPLTSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNML 914

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +LE A  + K
Sbjct: 915 GAEQSGFIADL--GYETYQKILEEAVDELK 942


>gi|298375260|ref|ZP_06985217.1| transcription-repair coupling factor [Bacteroides sp. 3_1_19]
 gi|298267760|gb|EFI09416.1| transcription-repair coupling factor [Bacteroides sp. 3_1_19]
          Length = 1120

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 143/450 (31%), Positives = 225/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        A  + +A  + LL  ++  K+E G     +  +  ++  +  +  T  Q  
Sbjct: 505 WEKMKERTKAKVKDIARDLILLYSKR--KQETGFAYTPDSFMQHELEASFIYEDTPDQMK 562

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  ++  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+
Sbjct: 563 ATAEVKADMESTRPMDRLICGDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQ 622

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++    ++ I+     A  +  L+ +  G+ +I+IGTH +    +++  L L+I
Sbjct: 623 TFCERLKDFPCKIDYISRARTAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLI 682

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S IT  P  R P++
Sbjct: 683 IDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQ 742

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  D + E +   +S   + ++I  +I+   E       E          + +A
Sbjct: 743 TEVERFN-PDIIREAINFEMSRNGQVFFINNRIQNIYEMEALVRREV-------PDARVA 794

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M     E ++  F N    +LIAT+++E GIDV +A+ III NA+ FGL+ LHQL
Sbjct: 795 VGHGQMEPEKLEKIILDFVNYEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQL 854

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR    + C LL  P   L++ +  RL  ++N      G  IA +DL  R  G +L
Sbjct: 855 RGRVGRSNRKAFCYLLSPPLTSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNML 914

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +LE A  + K
Sbjct: 915 GAEQSGFIADL--GYETYQKILEEAVDELK 942


>gi|325913119|ref|ZP_08175489.1| transcription-repair coupling factor [Lactobacillus iners UPII
           60-B]
 gi|325477540|gb|EGC80682.1| transcription-repair coupling factor [Lactobacillus iners UPII
           60-B]
          Length = 1110

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 135/446 (30%), Positives = 228/446 (51%), Gaps = 19/446 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW           E +A ++  L +      E G     + ++ +      P+  T  Q 
Sbjct: 510 EWAKTKCRVQEKIEDIADEL--LAIYAHRATEKGFAFLPDDELQRDFEAAFPYLETPDQI 567

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AIK+I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P  ILA+QHY
Sbjct: 568 KAIKEIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVPTTILAEQHY 627

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +  ++  + V ++     +    +    +++G+  I++GTH +    I++  L L+
Sbjct: 628 ATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRDIKFKNLGLL 687

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S +   PA R PI
Sbjct: 688 IIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPI 747

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +      + V E     L+   + +++  +I++          ++   L +    + 
Sbjct: 748 QTYV-TEETPNIVREACLRELARNGQIFFLHNKIQDID--------QKVAYLSQLIPEAR 798

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++ENA+ +GL+QL+
Sbjct: 799 IEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLVENADTYGLSQLY 858

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY     L++ S  RL+ +++      GF IA  DL  R  G 
Sbjct: 859 QLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKIAMRDLSIRGAGN 918

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEI 658
           ILG +Q G    +     L+  +L+ 
Sbjct: 919 ILGKQQHGFIDSVGYD--LYAQMLDQ 942


>gi|325971064|ref|YP_004247255.1| transcription-repair coupling factor [Spirochaeta sp. Buddy]
 gi|324026302|gb|ADY13061.1| transcription-repair coupling factor [Spirochaeta sp. Buddy]
          Length = 1090

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 136/458 (29%), Positives = 233/458 (50%), Gaps = 17/458 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +   +     E LA  +  L  ++  K  IG     +     +   + PF  T  Q S
Sbjct: 499 WENKKAKARKNAEDLAKHLITLYAKR--KNSIGYAFPKDTDWQLQFEASFPFDETADQLS 556

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            I+DI  DM +   M R++ GDVG GKT +A  A+  AV  G Q   +AP  ILA+QHY+
Sbjct: 557 CIEDIKDDMEKPIVMDRLVCGDVGYGKTEIAFRAVFKAVMGGKQVAFLAPTTILAEQHYQ 616

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K      +    ++  + +  +++ L  +A G+  ++ GTH + Q  I Y  L L++
Sbjct: 617 NFLKRLGTFPVRCAQLSRIVTKKEQKQTLLALAEGKVDVLFGTHRILQKDIMYRDLGLLV 676

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ RFGV+ + ++     +   L ++ATPIPRTL ++ L   D+S +   P  R+PI+
Sbjct: 677 VDEEQRFGVKDKERIKTLRASIDSLSLSATPIPRTLYMSLLKIRDMSLLATPPIARRPIE 736

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T I   N    +++ ++  +    + +++  +IE + E  F+        L       I 
Sbjct: 737 TYIGEYNE-QTIVKAIRDEVERKGQVFFLHNRIESQDEVVFQ-----LTKLLPDVI--IE 788

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG+M     E  M  F +   ++L++TT+IE GID+ + + III+ A+ +GL+QL+QL
Sbjct: 789 SAHGQMDSTKLEDTMRRFIHEGIQVLVSTTIIENGIDIPNVNTIIIDRADRYGLSQLYQL 848

Query: 580 RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR +  +   L Y     LS+ +  RL ++        GF +A +D++ R  G +L
Sbjct: 849 RGRVGRNDSQAYAYLFYPQGSALSEIALKRLKIISEHTELGSGFKVAMKDMELRGTGNLL 908

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           G +QSG         +++  +L+ A +D +++  +D +
Sbjct: 909 GREQSGH--LATVGLDMYIRILDEAIRDLQNVGVKDEE 944


>gi|309804680|ref|ZP_07698745.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           09V1-c]
 gi|308166072|gb|EFO68290.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           09V1-c]
          Length = 1110

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 134/446 (30%), Positives = 229/446 (51%), Gaps = 19/446 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW           E +A ++  L +      E G     + ++ +    + P+  T  Q 
Sbjct: 510 EWAKTKCRVQEKIEDIADEL--LAIYAHRATEKGFAFLPDDELQRDFEASFPYLETPDQI 567

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AIK+I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P  ILA+QHY
Sbjct: 568 KAIKEIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVPTTILAEQHY 627

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +  ++  + V ++     +    +    +++G+  I++GTH +    I++  L L+
Sbjct: 628 ATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRDIKFKNLGLL 687

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S +   PA R PI
Sbjct: 688 IIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPI 747

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +      + V E     L+   + +++  +I++          ++   L +    + 
Sbjct: 748 QTYV-TEETPNIVREACLRELARNGQIFFLHNKIQDID--------QKVAYLSQLIPEAR 798

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++ENA+ +GL+QL+
Sbjct: 799 IEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLVENADTYGLSQLY 858

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY     L++ S  RL+ +++      GF IA  DL  R  G 
Sbjct: 859 QLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKIAMRDLSIRGAGN 918

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEI 658
           +LG +Q G    +     L+  +L+ 
Sbjct: 919 VLGKQQHGFIDSVGYD--LYAQMLDQ 942


>gi|309803761|ref|ZP_07697847.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           11V1-d]
 gi|308164170|gb|EFO66431.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           11V1-d]
          Length = 1110

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 135/446 (30%), Positives = 230/446 (51%), Gaps = 19/446 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW           E +A ++  L +      E G     + ++ +    + P+  T  Q 
Sbjct: 510 EWAKTKCRVQEKIEDIADEL--LAIYAHRATEKGFAFLPDDELQRDFEASFPYLETPDQI 567

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AIK+I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P  ILA+QHY
Sbjct: 568 KAIKEIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVPTTILAEQHY 627

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +  ++  + V ++     +    +    +++G+  I++GTH +    I++  L L+
Sbjct: 628 ATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRDIKFKNLGLL 687

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S +   PA R PI
Sbjct: 688 IIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPI 747

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +      + V E     L+   + +++  +I++          ++ + L +    + 
Sbjct: 748 QTYV-TEETPNIVREACLRELARNGQIFFLHNKIQDID--------QKVSYLSQLIPEAR 798

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++ENA+ +GL+QL+
Sbjct: 799 IEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLVENADTYGLSQLY 858

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY     L++ S  RL+ +++      GF IA  DL  R  G 
Sbjct: 859 QLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKIAMRDLSIRGAGN 918

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEI 658
           ILG +Q G    +     L+  +L+ 
Sbjct: 919 ILGKQQHGFIDSVGYD--LYAQMLDQ 942


>gi|312872569|ref|ZP_07732637.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2062A-h1]
 gi|311091931|gb|EFQ50307.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2062A-h1]
          Length = 1110

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 134/446 (30%), Positives = 229/446 (51%), Gaps = 19/446 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW           E +A ++  L +      E G     + ++ +    + P+  T  Q 
Sbjct: 510 EWAKTKCRVQEKIEDIADEL--LAIYAHRATEKGFAFLPDDELQRDFEASFPYLETPDQI 567

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AIK+I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P  ILA+QHY
Sbjct: 568 KAIKEIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVPTTILAEQHY 627

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +  ++  + V ++     +    +    +++G+  I++GTH +    I++  L L+
Sbjct: 628 ATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRDIKFKNLGLL 687

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S +   PA R PI
Sbjct: 688 IIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPI 747

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +      + V E     L+   + +++  +I++          ++   L +    + 
Sbjct: 748 QTYV-TEETPNIVREACLRELARNGQIFFLHNKIQDID--------QKVAYLSQLIPEAR 798

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++ENA+ +GL+QL+
Sbjct: 799 IEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLVENADTYGLSQLY 858

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY     L++ S  RL+ +++      GF IA  DL  R  G 
Sbjct: 859 QLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKIAMRDLSIRGAGN 918

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEI 658
           +LG +Q G    +     L+  +L+ 
Sbjct: 919 VLGKQQHGFIDSVGYD--LYAQMLDQ 942


>gi|302205849|gb|ADL10191.1| transcription-repair coupling factor [Corynebacterium
            pseudotuberculosis C231]
 gi|302330407|gb|ADL20601.1| transcription-repair coupling factor [Corynebacterium
            pseudotuberculosis 1002]
 gi|308276083|gb|ADO25982.1| transcription-repair coupling factor [Corynebacterium
            pseudotuberculosis I19]
          Length = 1264

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 140/454 (30%), Positives = 232/454 (51%), Gaps = 19/454 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G P   +     ++  N P+  T+ Q 
Sbjct: 599  DWKNTKKKARAAVREIAGELVELYAKRQSA--PGHPFAPDSPWQYEMEDNFPYVETEDQM 656

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+ +  DM +   M R++ GDVG GKT VA+ A   AV+ G Q V++ P  +LAQQH 
Sbjct: 657  MAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVVLVPTTLLAQQHL 716

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + +  ++        ++ ++ +A G   I+IGTH L Q  IQ+  L LV
Sbjct: 717  STFDERMAGFPVNLRGLSRFTSTVEAKETIKGLADGTVDIVIGTHRLLQTGIQWKNLGLV 776

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 777  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPI 836

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T +       ++   ++  L    + +++  ++ + +        ++   L E    + 
Sbjct: 837  LTYVGAQED-KQIAAAIRRELLRDGQVFFVHNKVSDIE--------KKARDLRELVPEAR 887

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLH
Sbjct: 888  IVVAHGQMSEELLEQTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLH 947

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR  E      LY     L++NSY RL+ +    D   G  +A +DL+ R  G 
Sbjct: 948  QLRGRVGRSRERGYAYFLYPKGQTLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGN 1007

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            +LG +QSG         +L+  L+  A +  + +
Sbjct: 1008 VLGAQQSGHI--AGVGFDLYVRLVGEAVEAYRAL 1039


>gi|262382158|ref|ZP_06075296.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262297335|gb|EEY85265.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 1127

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 143/450 (31%), Positives = 225/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        A  + +A  + LL  ++  K+E G     +  +  ++  +  +  T  Q  
Sbjct: 512 WEKMKERTKAKVKDIARDLILLYSKR--KQETGFAYTPDSFMQHELEASFIYEDTPDQMK 569

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  ++  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+
Sbjct: 570 ATAEVKADMESTRPMDRLICGDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQ 629

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++    ++ I+     A  +  L+ +  G+ +I+IGTH +    +++  L L+I
Sbjct: 630 TFCERLKDFPCKIDYISRARTAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLI 689

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S IT  P  R P++
Sbjct: 690 IDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQ 749

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  D + E +   +S   + ++I  +I+   E       E          + +A
Sbjct: 750 TEVERFN-PDIIREAINFEMSRNGQVFFINNRIQNIYEMEALVRREV-------PDARVA 801

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M     E ++  F N    +LIAT+++E GIDV +A+ III NA+ FGL+ LHQL
Sbjct: 802 VGHGQMEPEKLEKIILDFVNYEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQL 861

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR    + C LL  P   L++ +  RL  ++N      G  IA +DL  R  G +L
Sbjct: 862 RGRVGRSNRKAFCYLLSPPLTSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNML 921

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +LE A  + K
Sbjct: 922 GAEQSGFIADL--GYETYQKILEEAVDELK 949


>gi|300858127|ref|YP_003783110.1| transcription-repair-coupling factor [Corynebacterium
            pseudotuberculosis FRC41]
 gi|300685581|gb|ADK28503.1| transcription-repair-coupling factor [Corynebacterium
            pseudotuberculosis FRC41]
          Length = 1265

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 140/454 (30%), Positives = 232/454 (51%), Gaps = 19/454 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G P   +     ++  N P+  T+ Q 
Sbjct: 600  DWKNTKKKARAAVREIAGELVELYAKRQSA--PGHPFAPDSPWQYEMEDNFPYVETEDQM 657

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI+ +  DM +   M R++ GDVG GKT VA+ A   AV+ G Q V++ P  +LAQQH 
Sbjct: 658  MAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVVLVPTTLLAQQHL 717

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + +  ++        ++ ++ +A G   I+IGTH L Q  IQ+  L LV
Sbjct: 718  STFDERMAGFPVNLRGLSRFTSTVEAKETIKGLADGTVDIVIGTHRLLQTGIQWKNLGLV 777

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 778  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPI 837

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T +       ++   ++  L    + +++  ++ + +        ++   L E    + 
Sbjct: 838  LTYVGAQED-KQIAAAIRRELLRDGQVFFVHNKVSDIE--------KKARDLRELVPEAR 888

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLH
Sbjct: 889  IVVAHGQMSEELLEQTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLH 948

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR  E      LY     L++NSY RL+ +    D   G  +A +DL+ R  G 
Sbjct: 949  QLRGRVGRSRERGYAYFLYPKGQTLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGN 1008

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            +LG +QSG         +L+  L+  A +  + +
Sbjct: 1009 VLGAQQSGHI--AGVGFDLYVRLVGEAVEAYRAL 1040


>gi|322515787|ref|ZP_08068732.1| exopolyphosphatase [Streptococcus vestibularis ATCC 49124]
 gi|322125749|gb|EFX97067.1| exopolyphosphatase [Streptococcus vestibularis ATCC 49124]
          Length = 1195

 Score =  343 bits (879), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 234/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +    +    +  ++ 
Sbjct: 557 KLNDGRFQKTKQKVSKQVEDIADDLLKLYA--ERSQLKGFAFSPDDDNQRDFDDDFSYAE 614

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +IK++  DM     M R+L GDVG GKT VA+ A   AV  G Q  I+ P  +L
Sbjct: 615 TVDQLRSIKEVKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVL 674

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A QHY   K+  +N  + V+ ++    +  + + +E +A G+  IIIGTH L    +++ 
Sbjct: 675 AHQHYLNFKERFENHAVEVDELSRFRSKKEQNETIENLAKGRIDIIIGTHRLLSKDVKFS 734

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 735 DLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSIIETAPT 794

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + ++I  ++E           ++ + LHE 
Sbjct: 795 NRYPVQTYVMETN-PGLIREAILREMDRGGQIFYIYNRVETID--------QKVSELHEI 845

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + I  +HG+MS++  E+ +  F NG   +L+ATT+IE GID+ + + + IENA+H G
Sbjct: 846 VPEARIGFVHGQMSEVMLENTLLDFLNGDYDVLVATTIIETGIDISNVNTLFIENADHMG 905

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 906 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLDAIKGFTELGSGFKIAMRDLSI 965

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 966 RGAGNILGSSQSGFID--SVGFEMYSQLLEEA 995


>gi|256839562|ref|ZP_05545071.1| transcription-repair coupling factor [Parabacteroides sp. D13]
 gi|256738492|gb|EEU51817.1| transcription-repair coupling factor [Parabacteroides sp. D13]
          Length = 1145

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 143/450 (31%), Positives = 225/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        A  + +A  + LL  ++  K+E G     +  +  ++  +  +  T  Q  
Sbjct: 530 WEKMKERTKAKVKDIARDLILLYSKR--KQETGFAYTPDSFMQHELEASFIYEDTPDQMK 587

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  ++  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+
Sbjct: 588 ATAEVKADMESTRPMDRLICGDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQ 647

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++    ++ I+     A  +  L+ +  G+ +I+IGTH +    +++  L L+I
Sbjct: 648 TFCERLKDFPCKIDYISRARTAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLI 707

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S IT  P  R P++
Sbjct: 708 IDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQ 767

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  D + E +   +S   + ++I  +I+   E       E          + +A
Sbjct: 768 TEVERFN-PDIIREAINFEMSRNGQVFFINNRIQNIYEMEALVRREV-------PDARVA 819

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M     E ++  F N    +LIAT+++E GIDV +A+ III NA+ FGL+ LHQL
Sbjct: 820 VGHGQMEPEKLEKIILDFVNYEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQL 879

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR    + C LL  P   L++ +  RL  ++N      G  IA +DL  R  G +L
Sbjct: 880 RGRVGRSNRKAFCYLLSPPLTSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNML 939

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +LE A  + K
Sbjct: 940 GAEQSGFIADL--GYETYQKILEEAVDELK 967


>gi|153814527|ref|ZP_01967195.1| hypothetical protein RUMTOR_00741 [Ruminococcus torques ATCC 27756]
 gi|317500570|ref|ZP_07958791.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145848021|gb|EDK24939.1| hypothetical protein RUMTOR_00741 [Ruminococcus torques ATCC 27756]
 gi|316898003|gb|EFV20053.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 1115

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 173/635 (27%), Positives = 291/635 (45%), Gaps = 62/635 (9%)

Query: 42  IDLLFYHPSSFIDRHYRPKI---SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
            DL       + D           E+    I+   GY S+   + +      K ++   +
Sbjct: 371 EDL-----RDY-DLSSFYSEDMQREVKPGEIMAAYGYASEGYEYPM-----LKFVVISES 419

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
                  F RK +  K   +EG++I    ++K            Y+ H +  +       
Sbjct: 420 DI-----FGRKKKKKKRKKYEGQRIQDFAELKPG---------DYVVHENHGIG------ 459

Query: 159 VYSLPTGLSVDLFKK-IIVEALSRLPVLPEWIE---KDLLQKKSFPSIAEAFNIIHNPRK 214
           VY     + V+   K  +    +   VL  +I     DL+QK +     +         K
Sbjct: 460 VYKGIEKIEVEKIVKDYMKIVYAEGGVL--YIPVAQMDLIQKYAGADAKK-----PRLNK 512

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
               +W     +     +++A  +  L   +Q  +  G     +    ++     PF  T
Sbjct: 513 LGTIQWGKTKSQVKKAVQIVAKDLVELYAVRQ--QSEGFVYGPDTVWQKEFEEMFPFEET 570

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI+D   DM  K  M R++ GDVG GKT +A+ A   AV+ G Q V + P  ILA
Sbjct: 571 DDQLQAIEDTKHDMESKKIMDRLICGDVGYGKTEIAIRAAFKAVQEGKQVVCLVPTTILA 630

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           QQHY    +  +   + ++++      A ++K +E    G   I++GTH +    + +  
Sbjct: 631 QQHYNTFVQRLKEFPVRIDLLCRFRSAAEQKKTIEDTKKGFVDILVGTHRVLSKDVVFKD 690

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ +G  D+S + E P  
Sbjct: 691 LGLLIIDEEQRFGVTHKEKIKKLKENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPNE 750

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R PI+T ++  N  + V E +   L+   + Y++  ++ +  +        R  SL    
Sbjct: 751 RMPIQTYVMEYND-EMVREAITRELARDGQVYYVYNRVNDIADVAG-----RIQSLVPD- 803

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            +++A  HG+M + + E +M  F NG   +L++TT+IE G+D+ +A+ +II++A+ FGL+
Sbjct: 804 -ANVAFAHGQMKERELEDIMYDFINGDIDVLVSTTIIETGLDIPNANTMIIQDADRFGLS 862

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QL+QLRGRVGR   ++   LLY     L + +  RLS ++   D   G  IA  DL+ R 
Sbjct: 863 QLYQLRGRVGRSNRMAYAFLLYQRDKLLKEVAEKRLSAIREFTDLGSGIKIAMRDLEIRG 922

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            G +LG  QSG  + +     L+  +L  A +  K
Sbjct: 923 AGNLLGEAQSGHMEAVGYD--LYCKMLNEAVRQLK 955


>gi|241896607|ref|ZP_04783903.1| transcription-repair coupling factor [Weissella paramesenteroides
            ATCC 33313]
 gi|241870088|gb|EER73839.1| transcription-repair coupling factor [Weissella paramesenteroides
            ATCC 33313]
          Length = 1166

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 135/452 (29%), Positives = 228/452 (50%), Gaps = 18/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A  +  L   ++ K+        + +  ++     P+  T  Q 
Sbjct: 568  EWQRAKAKVAKKVEDIADDLLALYAEREIKQG--YAFAPDDEEMRRFEEAFPYPETPDQI 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             ++K+I  DM +   M R+L GDVG GKT VA+ A   A   G Q  ++ P  ILAQQHY
Sbjct: 626  RSVKEIKADMEKSRPMDRLLVGDVGFGKTEVAMRAAFKAAHEGKQVAMLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +      + T + +  ++    +    +    + +    I+IGTH+L    + +  L L+
Sbjct: 686  DSFLNRFEGTNLKIAWMSRFQTKKQMTEIKTGLKNHTIDIVIGTHSLLAKDVAFGDLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L    T   VL +TATPIPRTL +  +G  D+S I   PA R PI
Sbjct: 746  IIDEEQRFGVKHKERLKSLQTNVDVLTLTATPIPRTLNMAMVGVRDLSVIETPPANRYPI 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    +   ++  ++ G + +++  ++ + ++           SL     + +
Sbjct: 806  QTYVMEQNGR-VIANAIEREMARGGQTFYLHNRVADIEKVAG-----MIQSLVPE--AQV 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A IHG+M++   E ++  F NG   +L+ TT+IE G+D+ +A+ + +ENA++ GLAQL+Q
Sbjct: 858  AYIHGQMTETQMEGILVDFINGEYDVLVTTTIIETGVDIPNANTLFVENADYMGLAQLYQ 917

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++     Y     L++ S  RL+ +++      GF IA  DL  R  G++
Sbjct: 918  LRGRVGRSNNVAYAYFTYPGTRSLNEESEKRLTAIRDFTELGSGFKIAMRDLSIRGAGDL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG  Q G    +     L+  +L+ A   AK 
Sbjct: 978  LGQSQHGFINAVGYD--LYTQMLQEAV-AAKQ 1006


>gi|19745206|ref|NP_606342.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS8232]
 gi|19747295|gb|AAL96841.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes MGAS8232]
          Length = 1167

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 153/452 (33%), Positives = 236/452 (52%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  ++ G   + +  + +    +  F  
Sbjct: 555 KLNDGRFQKTKQKVARQVEDIADDLLKLYA--ERSQQKGFSFSPDDDLQRAFDDDFAFVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I  DM     M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 613 TEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHYE  K   +N  + V++++    +  + + LER+  GQ  IIIGTH L    + + 
Sbjct: 673 AQQHYENFKARFENYPVEVDVLSRFRSKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++           ++   L E 
Sbjct: 793 NRYPVQTYVLE-NNPGLVREAIIREMDRGGQVFYVYNKVDTID--------KKVAELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + IENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 993


>gi|312871549|ref|ZP_07731642.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           3008A-a]
 gi|311092944|gb|EFQ51295.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           3008A-a]
          Length = 1110

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 134/446 (30%), Positives = 229/446 (51%), Gaps = 19/446 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW           E +A ++  L +      E G     + ++ +    + P+  T  Q 
Sbjct: 510 EWAKTKCRVQEKIEDIADEL--LAIYAHRATEKGFAFLPDDELQRDFEASFPYLETPDQI 567

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P  ILA+QHY
Sbjct: 568 KAIREIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVPTTILAEQHY 627

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +  ++  + V ++     +    +    +++G+  I++GTH +    I++  L L+
Sbjct: 628 ATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRDIKFKNLGLL 687

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S +   PA R PI
Sbjct: 688 IIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPI 747

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +      + V E     L+   + +++  +I++          ++   L +    + 
Sbjct: 748 QTYV-TEETPNIVREACLRELARNGQIFFLHNKIQDID--------QKVAYLSQLIPEAR 798

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++ENA+ +GL+QL+
Sbjct: 799 IEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLVENADTYGLSQLY 858

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY     L++ S  RL+ +++      GF IA  DL  R  G 
Sbjct: 859 QLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKIAMRDLSIRGAGN 918

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEI 658
           ILG +Q G    +     L+  +L+ 
Sbjct: 919 ILGKQQHGFIDSVGYD--LYAQMLDQ 942


>gi|241668341|ref|ZP_04755919.1| transcription-repair coupling factor [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876874|ref|ZP_05249584.1| transcription-repair coupling factor [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842895|gb|EET21309.1| transcription-repair coupling factor [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 1139

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 137/417 (32%), Positives = 217/417 (52%), Gaps = 13/417 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  + +   G   +++ +   +   + P+  T  Q  AI D+ +DM     M R++ G
Sbjct: 565 LEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETPDQILAINDVFKDMISAKPMDRLICG 624

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT +A+ A   A +   Q  I+ P  ILAQQHY   K    NT + +E+IT +  
Sbjct: 625 DVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQHYNSFKDRFANTAVNIEVITRSKT 684

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              + +  + +  G   IIIGTH L    I +  L L+I+DE+HRFGV Q+ KL      
Sbjct: 685 AKAQEELFDNLKKGTVDIIIGTHKLISSKIDFNNLGLLIIDEEHRFGVAQKEKLKALKAE 744

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L M+ATPIPR+L +      D+S I   PA R  +KT +   +  + + E +     
Sbjct: 745 IDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDN-NIIREAVSRETI 803

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  +++  ++       E    L       IAI HG+MS+ + + +M  FK+ 
Sbjct: 804 RGGQIFYLYNKVDTIQKKK-----EILQELFPRL--RIAIAHGQMSEKEIQKIMFDFKHN 856

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
              +L+ TT+IE GID+ +A+ +IIE+A + GLAQLHQLRGRVGR    +   +L     
Sbjct: 857 KYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLVPSEG 916

Query: 600 -LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            ++K++  RL  + +T+    GF +A  DL+ R  GEILG +QSG    +     + 
Sbjct: 917 SITKDATKRLEAIGSTDSLGGGFTLANHDLEIRGAGEILGQEQSGNIDGIGLNLYMD 973


>gi|123968563|ref|YP_001009421.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
            AS9601]
 gi|123198673|gb|ABM70314.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
            AS9601]
          Length = 1170

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 137/464 (29%), Positives = 240/464 (51%), Gaps = 18/464 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  + +K  G     +G    ++  + P+ PT  Q +A+++I  DM  +  M R++ G
Sbjct: 582  LKLYAKREKLKGYIYPEDGPWQDELEESFPYQPTPDQITAVEEIKSDMESEKPMDRLVCG 641

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VA+ A+  A+ +G Q +++AP  ILAQQH+  I        I V ++     
Sbjct: 642  DVGFGKTEVAVRAIFKAITSGKQVILLAPTTILAQQHWRTISNRFSPYPIKVSLLNRFKT 701

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               R++    + + +  +++ TH +    I+   L L+++DE+ RFGV+Q+ K+ +  T+
Sbjct: 702  VNERKEIYAGLKNNKIDLVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTS 761

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL ++ATPIPRTL ++  G   +S +   P  R+ IKT +  I+ +D +   +   L 
Sbjct: 762  IDVLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRSIKTYLAEID-MDVIRTAINQELD 820

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
             G + +++ P+I +          +  N L   F S    + HG+M++ + E+ M +F N
Sbjct: 821  RGGQIFYVLPRISDI--------NQALNKLKNIFPSLKFIVAHGQMNETELENAMIAFNN 872

Query: 540  GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
            G   L+I TT+IE G+D+   + IIIE++  FGL+QL+QLRGRVGR    +   L Y   
Sbjct: 873  GEVDLMICTTIIESGLDIPKVNTIIIEDSHKFGLSQLYQLRGRVGRSSVQAHAWLFYPDI 932

Query: 599  -PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP---EL 651
              ++  +  RL  +K       G+ +A +D++ R  G +LG +QSG    +        L
Sbjct: 933  NKINDAAKQRLKAIKDFSELGSGYQLAMKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEML 992

Query: 652  HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
            H+++ EI+ ++   +     DL          +L   +  EA++
Sbjct: 993  HEAISEISGQEIPEVNDTQIDLPINAFIPATWILNREEKLEAYK 1036


>gi|123966148|ref|YP_001011229.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9515]
 gi|123200514|gb|ABM72122.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9515]
          Length = 1175

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 137/465 (29%), Positives = 232/465 (49%), Gaps = 22/465 (4%)

Query: 219  EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EW     + R    ++    + L   R++ K  I      +G   +++  + P+ PT  Q
Sbjct: 563  EWLKIKDKNRKIIKKVAYDILKLYAKREKLKGHIY---PEDGPWQKELEESFPYQPTPDQ 619

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +A+K+I  DM     M R++ GDVG GKT VA+ A+  A+ +G Q +++AP  ILAQQH
Sbjct: 620  LTAVKEIKIDMESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQVILLAPTTILAQQH 679

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            +           I V ++      + ++     + + +  +++ TH +    I+   L L
Sbjct: 680  WRTFNNRFSPYPIKVSLLNRFKTSSEKKDIYAGLKNNKIDLVVATHQILGKEIEIKNLGL 739

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +++DE+ RFGV+Q+ K+    T   VL ++ATPIPRTL ++  G   +S +   P  R+ 
Sbjct: 740  LVIDEEQRFGVRQKEKIKNIKTNIDVLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRS 799

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
            IKT +  I+ +D +   +   L  G + +++ P+I +          +  N L   F   
Sbjct: 800  IKTYLSEID-MDVIRTAISQELDRGGQIFYVLPRISDID--------QAVNKLTNMFNDL 850

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               + HG+M++ID E+ M +F NG   L+I TT+IE G+D+   + IIIE++  FGL+QL
Sbjct: 851  KFIVAHGQMNEIDLENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHKFGLSQL 910

Query: 577  HQLRGRVGRGEEISSCILLYH-----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
            +QLRGRVGR    +   L Y         SK     +        G+ +A +D++ R  G
Sbjct: 911  YQLRGRVGRSGIQAHAWLFYPNLNNINEASKQRLKAIKDFSELGSGYQLAMKDMEIRGVG 970

Query: 632  EILGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHILTQDPDL 673
             +LG +QSG    +        LH+++ EI  ++   +     DL
Sbjct: 971  SLLGEEQSGKVNAIGYDLYIEMLHEAISEINGQEIPEVKDTQVDL 1015


>gi|158521716|ref|YP_001529586.1| transcription-repair coupling factor [Desulfococcus oleovorans Hxd3]
 gi|158510542|gb|ABW67509.1| transcription-repair coupling factor [Desulfococcus oleovorans Hxd3]
          Length = 1174

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 156/525 (29%), Positives = 238/525 (45%), Gaps = 33/525 (6%)

Query: 150  DVNFPLIEAVYSLP-TGLSVDLFKKIIVEALSRLPVLPEWI---EKDLLQKKSFPSIAEA 205
            D      E +  +   G++ D         LS       ++     D+ +K      AEA
Sbjct: 517  DHGIGRYEGIRKVTVEGIANDFL------LLSYRDGDRLYLSVDRMDMARKYVGADDAEA 570

Query: 206  FNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI 265
              +     K     W     +     E +A ++  L  R++ ++  G   +  G+     
Sbjct: 571  PLL----DKMGAKTWGRVKAKARKEAEKIAKELLDLYARRRVQQGHG--FHPPGQWFSDF 624

Query: 266  LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
                 F  T  Q   I ++L DM+    M R++ GDVG GKT VA+ +    V  G Q  
Sbjct: 625  EAGFDFEETDDQLKVINEVLSDMASSTPMDRLVCGDVGYGKTEVAMRSSFMCVCDGFQVA 684

Query: 326  IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
            ++ P  +LA+QH+    +        +  ++     A +++ +  +  G+  I+IGTH L
Sbjct: 685  VLVPTTVLAEQHFATFSRRFAGYPFNIACLSRFKTPARQKQIVADLKEGRVDIVIGTHRL 744

Query: 386  FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
                + + +L LVI+DE+ RFGV+ +  L +  T   VL +TATPIPRTL ++  G  DI
Sbjct: 745  LSKDVAFKQLGLVILDEEQRFGVKHKETLKKMRTTVDVLSLTATPIPRTLHMSLSGMRDI 804

Query: 446  SKITEKPAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            S IT  P  RK IKT I   +  D +I   ++  L  G + Y++   I          + 
Sbjct: 805  SVITTPPEHRKAIKTYISEFD--DAIIRTAIRKELERGGQIYFVHNNI-----HKIAFIA 857

Query: 505  ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
            +    L       + I+HGR+     E+ M  F N    +L+ T +IE GID+  A+ I 
Sbjct: 858  DHLKKLVPEV--RLGIVHGRLDQNTLETCMMQFVNREIDMLVCTRIIESGIDIPSANTIF 915

Query: 565  IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFL 619
            I  A+ FGLAQ++QLRGRVGR +E +   L       L K++  RL VL    D   GF 
Sbjct: 916  INRADMFGLAQIYQLRGRVGRSDEQAYAYLFIPRESALGKDARKRLKVLMEHSDLGSGFQ 975

Query: 620  IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            IA  DLK R  G  LG+ QSG    +     L   L+E A  + K
Sbjct: 976  IAMNDLKIRGGGAALGVSQSGHITAVGYDMFL--QLMEQAVAELK 1018


>gi|310286850|ref|YP_003938108.1| ATP-dependent DNA helicase [Bifidobacterium bifidum S17]
 gi|309250786|gb|ADO52534.1| ATP-dependent DNA helicase [Bifidobacterium bifidum S17]
          Length = 898

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 215/883 (24%), Positives = 341/883 (38%), Gaps = 221/883 (25%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P    D      + E      +  +  +       +  R
Sbjct: 17  RRVGALKSLGVVTVGDALTYYPFRVADPVPLRALREARIGERMAFSASVRGMRVVPMNVR 76

Query: 88  RPYK--ILLNDGTGEIT---------LLFFY---RKTEMLKNVFFEGRKITVTGKIKKLK 133
           R Y+   +++DG   ++         L+FF    +  + L      G  + + G+  +  
Sbjct: 77  RGYRLEAVVDDGDFAVSRHVAGAAARLVFFSYKKQYVDWLSMRLRSGAIVVIAGEPSEFN 136

Query: 134 NRIIMVHPHYIF------------------------HNSQDVNFPLI---EAVYSLPTGL 166
            ++   HP  +                          ++ +     I     VY   + +
Sbjct: 137 GQLQFTHPEIMTVAPGSGPADGEYSGVVQMSALKYDADTVEAGLRRISRPRPVYHASSRI 196

Query: 167 SVDLFKKIIVEALSRLP------------------------------------------- 183
           S +   + IV+ +  L                                            
Sbjct: 197 SSEHIHESIVQCIELLAGTGQDLPGDAATEAPQTMKPMEDGGISGAGTAPADAESRSGNA 256

Query: 184 -------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
                   +P+ + + + +       AEAF  IH+P    DF+          Y+E    
Sbjct: 257 VAVGLARAIPDVLPESVRESNHLLHRAEAFLAIHDPLSTADFKRAIGTMR---YEEAFVS 313

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q ALL  R   +K+  +P      +  + + ++PF  T  Q   I DI  DM+++  M R
Sbjct: 314 QTALLQSRSNVRKDAALPCAGV-ALRDRFIESLPFPLTGGQREVIDDIGVDMAREYPMQR 372

Query: 297 ILQGDVGSGKTLV---ALI---------------------------AMAAAVE------- 319
           +LQG+VGSGKT+V   A++                           AM  A++       
Sbjct: 373 LLQGEVGSGKTVVAVAAMLQAAGSGHQAVLVAPTQVLAEQHHATISAMLCAIDGVETCDD 432

Query: 320 --------------------------AGGQAVIMAPI-----GILAQQHYEFIKKYTQNT 348
                                     A G+A +  P+         Q      +      
Sbjct: 433 PSRDALSPNDPADLIKATESAADDGDAKGRAAVKHPVKHSGARSGKQDGAAHAQSDANTR 492

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            + V ++TG M  A RR+AL   A G   II+ THA F  + Q   L LV++DEQHRFGV
Sbjct: 493 HVPVILLTGGMKLAARRRALALAASGDPCIIVATHAAFSKTFQAPNLALVVIDEQHRFGV 552

Query: 409 QQRLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           +QR  L  +    PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T I+P + 
Sbjct: 553 EQRESLRTKNDVVPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTFIVPEDD 612

Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQI-------------------------------- 492
              +  +   ++  +  G++AY +CP+I                                
Sbjct: 613 GRMMGSMFAHIRGRIDAGERAYVVCPRIDADDESDGDDDTSGASQIGVYDDSDAYRRESA 672

Query: 493 -------------EEKKESNFRSVVERFNSLHEHFTS-------SIAIIHGRMSDIDKES 532
                        E+   +  R  +     +    +S         A + GR  D  K+ 
Sbjct: 673 TAAANTSASAPSQEDGDGAPSRPPLHSVAEIERRLSSLPQFRGIRFATLTGRDDDATKQQ 732

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM  F +G   +L+ATTVIEVG+DV  AS I+I +A+ +GL+QLHQLRGRVGRG   S  
Sbjct: 733 VMADFADGATPVLVATTVIEVGVDVPQASCIVIFDADRYGLSQLHQLRGRVGRGGTDSWA 792

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPEL 651
            L+        +  RL V++ T DG  IA+ DL+ R  G++LG  QSG      + +   
Sbjct: 793 FLISRAEDGGPAQQRLQVIQGTLDGAQIAQADLEFRGAGDVLGDAQSGGKSGLKLLRVVK 852

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
              ++  AR+ A  +L  DPDL+    +    +L   + NE F
Sbjct: 853 DAKIIADARERAGRLLADDPDLSG-EVELAGAVLDFTRGNETF 894


>gi|322417709|ref|YP_004196932.1| transcription-repair coupling factor [Geobacter sp. M18]
 gi|320124096|gb|ADW11656.1| transcription-repair coupling factor [Geobacter sp. M18]
          Length = 1157

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 140/442 (31%), Positives = 226/442 (51%), Gaps = 17/442 (3%)

Query: 226  ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            +  A  E+      LL +    + + G   +    + +    +  F  T  Q +AI  ++
Sbjct: 573  KAKARAEIQEMAAELLKIHAAREVQEGYRFSPADDMYRAFEASFAFEETPDQATAIDQVI 632

Query: 286  QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
             DM  +  M R++ GDVG GKT VA+ A   +   G Q  I+ P  +LAQQH E      
Sbjct: 633  SDMESQRPMDRLVCGDVGYGKTEVAMRAAFKSTLDGKQVAILVPTTVLAQQHAESFAARL 692

Query: 346  QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
            ++  + VE+++       +++ LE +  G+  I+IGTH L Q  + +  L L+IVDE+ R
Sbjct: 693  KDYPVRVEMLSRFRTPQQQKQILEGVKKGEVDIVIGTHRLLQKDVVFKDLGLLIVDEEQR 752

Query: 406  FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            FGV  + +L Q      +L +TATPIPRTL ++ +G  D+S I   P  R  IKT +   
Sbjct: 753  FGVAHKERLKQFRAVVDILTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLAIKTFVSRS 812

Query: 466  NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGR 524
            +  + + E +   L  G + +++  +++              + L      + IA+ HG+
Sbjct: 813  SD-ELIREAVLRELRRGGQIFFVHNRVQTIGAM--------ADELRRIVPEAKIAVGHGQ 863

Query: 525  MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
            M + + E VM SF +G   LL+ TT+IE G+D+  A+ +I+  A+ FGL+QL+QLRGRVG
Sbjct: 864  MPEKELEQVMLSFMHGETNLLLCTTIIESGLDIPTANTLIVNRADTFGLSQLYQLRGRVG 923

Query: 585  RGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQS 639
            R +  +   LL      +S  +  RL +L+   +   GF IA  DL+ R  G++LG +QS
Sbjct: 924  RSKTRAYAYLLIPGEGSISPEARERLKILQELTELGAGFRIATHDLEIRGAGDLLGARQS 983

Query: 640  GMPKFLIAQPELHDSLLEIARK 661
            G         EL+  LL+ A +
Sbjct: 984  G--DIAAVGFELYTELLDEAVR 1003


>gi|260060951|ref|YP_003194031.1| transcription-repair coupling factor [Robiginitalea biformata
           HTCC2501]
 gi|88785083|gb|EAR16252.1| transcription-repair coupling factor [Robiginitalea biformata
           HTCC2501]
          Length = 1121

 Score =  343 bits (879), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 135/470 (28%), Positives = 228/470 (48%), Gaps = 19/470 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +  +  + +A  +  +  +++ K   G     +  +  ++  +  +  T  Q +
Sbjct: 506 WKKLKAKTKSRVKKIAFDLIQVYAKRRMK--KGFSHAPDSYLQHELEASFVYEDTPDQST 563

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A + +  DM  +  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  ILA QH+ 
Sbjct: 564 ATEAVKADMESERPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHFR 623

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +      + V+ +        RR  LE +  G+  I+IGTH L    +++  L L+I
Sbjct: 624 TFGERLAEMPVTVDYLNRFRSAKERRTLLENLKSGKLDIVIGTHQLVGKQVEFKDLGLLI 683

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL        VL +TATPIPRTL  + +   D+S I   P  R PI+
Sbjct: 684 VDEEQKFGVSVKDKLKSLKEHIDVLTLTATPIPRTLQFSLMAARDLSVINTPPPNRYPIE 743

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           + ++     + + + ++  +  G + +++  +IE   E            L     + + 
Sbjct: 744 SRVVRFGE-EVIRDAIRYEIQRGGQVFFVHNRIENIAEVAG-----LIQRLVPD--ARVG 795

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E +M  F NG   +L++TT+IE G+DV +A+ I+I NA +FGL+ LHQ+
Sbjct: 796 IGHGQMEGKKLEKLMLDFMNGEFDVLVSTTIIESGLDVTNANTILINNANNFGLSDLHQM 855

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C  +  P   ++  +  R+  L+       GF IA +DL+ R  G++L
Sbjct: 856 RGRVGRSNKKAFCYFITPPYHVMTAEARKRMEALEQYTELGSGFNIAMKDLEIRGAGDLL 915

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK--HILTQDPDLTSVRGQSIR 682
           G +QSG    +    E +  +L  A  + K         +    R Q +R
Sbjct: 916 GGEQSGFINEI--GFETYQKILAEAIDELKDNEFKDLYRETEGPRQQYVR 963


>gi|169628250|ref|YP_001701899.1| transcription-repair coupling factor [Mycobacterium abscessus ATCC
            19977]
 gi|169240217|emb|CAM61245.1| Probable transcription-repair coupling factor (TrcF) [Mycobacterium
            abscessus]
          Length = 1216

 Score =  342 bits (878), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 144/472 (30%), Positives = 233/472 (49%), Gaps = 17/472 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT+   +       +AG++  L   +Q     G     +    +++     F  T  Q 
Sbjct: 597  DWTNTKTKARKAVREIAGELVALYAARQAA--PGHAFAPDTPWQREMEDAFGFVETVDQL 654

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 655  TAITEVKSDMEKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 714

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +     T    + V  ++        +  +E +A G   I+IGTH L Q  +++  L LV
Sbjct: 715  QTFTNRTAGFPVKVAGLSRFTDPLTSKLVVEGMADGSVDIVIGTHRLLQTGVRWKDLGLV 774

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 775  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 834

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   L+  L    +A+++  ++             R   L     + +
Sbjct: 835  LTYVGPHDD-KQVAAALRRELLRDGQAFYVHNRVSTID-----KAAARIRDLVPE--ARV 886

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E  +  F N    +L+ TT+IE G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 887  VVAHGQMPEEMLERTVQGFWNREYDILVCTTIIETGLDISNANTLIVERADIFGLSQLHQ 946

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RLS +    D   G  +A +DL+ R  G +
Sbjct: 947  LRGRVGRSRERGYAYFLYSPEVPLTETAYDRLSTIAQNNDLGAGMAVAMKDLEIRGAGNV 1006

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG++QSG         +L+  L+  A +  +        LT+   + +RI L
Sbjct: 1007 LGVEQSGH--VAGVGFDLYVRLVGEAVEAYRAAADGKTVLTAEEPKEVRIDL 1056


>gi|163793172|ref|ZP_02187148.1| Transcription-repair coupling factor [alpha proteobacterium BAL199]
 gi|159181818|gb|EDP66330.1| Transcription-repair coupling factor [alpha proteobacterium BAL199]
          Length = 1162

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 144/449 (32%), Positives = 228/449 (50%), Gaps = 15/449 (3%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
               AR+      L      L+ +  + +     P+N    +  +     P++ T+ Q  A
Sbjct: 565  AWQARKARVKKRLRDMAEGLIAIAAEREVRRTQPLNPPSGVYDEFCARFPYTETEDQLRA 624

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            I D+L D+     M R++ GDVG GKT VAL A   AV  G Q  ++ P  +L +QH+  
Sbjct: 625  IDDVLSDLGSGKPMDRLVCGDVGFGKTEVALRAALVAVMQGYQVAVVVPTTLLCRQHFRG 684

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
             +   Q   I VE ++  +      +  + IA G  ++++GTHA+    + +  L LV+V
Sbjct: 685  FRDRFQGLPIRVEQLSRLVTPKDASEVRKGIASGDVNLVVGTHAVLSKQVSFSNLGLVVV 744

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+  FGV Q+ +L       HVL MTATPIPRTL +   G  ++S I   P  R  ++T
Sbjct: 745  DEEQHFGVAQKERLKDLRKEVHVLTMTATPIPRTLQMALSGVRELSLIATPPVDRLAVRT 804

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             ++P + +  + E +      G K +++CP++E+        V +R   L       + +
Sbjct: 805  FVMPYDGV-IIREAILRERYRGGKTFYVCPRVEDLV-----RVHDRLTKLVPEV--QVGV 856

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HGRM+  + E VM +F +G   +L++T ++E G+D+  A+ I+I  A+ FGLAQL+QLR
Sbjct: 857  AHGRMTPTELEDVMTAFTDGGFDVLLSTNIVESGLDIASANTIVIHRADMFGLAQLYQLR 916

Query: 581  GRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILG 635
            GRVGR +  +   L  HP   L+  +  RL V++   N   GF +A  D+  R  G +LG
Sbjct: 917  GRVGRSKTRAYGYLTTHPSKVLTPVAKRRLEVMQTLDNLGAGFSLASHDMDIRGAGNLLG 976

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             +QSG         EL+  LL  A + AK
Sbjct: 977  EEQSGH--VKEVGIELYQELLREAVEAAK 1003


>gi|302039582|ref|YP_003799904.1| transcription-repair-coupling factor [Candidatus Nitrospira defluvii]
 gi|300607646|emb|CBK43979.1| Transcription-repair-coupling factor [Candidatus Nitrospira defluvii]
          Length = 1157

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 139/459 (30%), Positives = 225/459 (49%), Gaps = 18/459 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W           E +A ++  L   ++           +  +  +      +  T  Q  
Sbjct: 555  WAKTTARVKKDIEEMAHELVDLYANRELVHRTSY--GKDSMLYHEFEAAFEYEETPDQRR 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+DI +D++    M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LA QHY+
Sbjct: 613  AIEDIAKDLASTKPMDRLVCGDVGYGKTEVAMRAAFKAVEENRQVAVLVPTTLLAHQHYD 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +        V +++        +  ++    G   ++IGTH L Q  +++  L LVI
Sbjct: 673  NFAERFAPFPTRVALLSRFQSPKDTKAIIKETEAGLVDVLIGTHRLLQKDVKFRNLGLVI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+  FGV+ + +L Q  T   VL +TATPIPRTL +T     D+S I   P+GR  I+
Sbjct: 733  IDEEQWFGVKHKERLKQLRTQVDVLTLTATPIPRTLQMTMASVRDLSIIDTPPSGRLAIR 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  +    + E +   L  G + Y++  ++E  +      +      L     + I 
Sbjct: 793  TQVLRFSE-KAIREAILRELGRGGQTYFVHNRVETME-----RMGAWLQELVPE--ARIV 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M     E+VM  F +    +LIA+ +I+ GIDV  A+ II+  A+ FGLAQL+QL
Sbjct: 845  MAHGQMDSKPLEAVMLKFFHREADILIASAIIQSGIDVPTANTIIVNRADTFGLAQLYQL 904

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGRG E +    L      LS+++  RL+ ++       GF IA  DL+ R  G +L
Sbjct: 905  RGRVGRGGEQAYAYFLVPDEGNLSEDAQKRLTAIQQFTELGSGFRIAAADLEIRGAGNLL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAK-HILTQDPD 672
            G +QSG         +L+  ++E A +  K  ++ ++PD
Sbjct: 965  GKQQSGHI--AAVGLDLYLQMVEQAVQRLKGQVVEEEPD 1001


>gi|226307788|ref|YP_002767748.1| transcription-repair coupling factor [Rhodococcus erythropolis PR4]
 gi|226186905|dbj|BAH35009.1| transcription-repair coupling factor [Rhodococcus erythropolis PR4]
          Length = 1229

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 230/472 (48%), Gaps = 17/472 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +AG++  L   +Q     G     +    +++     F+ T  Q 
Sbjct: 617  DWANTKRKARKAVREIAGELVQLYAARQAA--PGHAFGPDTPWQKELEDAFAFTETIDQL 674

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 675  TVISEVKADMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHL 734

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +   +  + V  ++        ++ +  +A G+  I++GTH L Q  I++  L LV
Sbjct: 735  QTFTERMASFPVKVRGLSRFTDAKDSKEIIAGMAEGEIDIVVGTHRLLQTGIRWKDLGLV 794

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 795  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPI 854

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L    + +++  ++    ++  +        L     + +
Sbjct: 855  LTYVGAYAD-KQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKK-----IRELVPE--ARV 906

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++   E  +  F      +L+ TT+IE G+D+ +A+ +I+E A+  GL+QLHQ
Sbjct: 907  VVAHGQMNEDTLEKTVQGFWERDFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQ 966

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PL++ +Y RL+ +    D   G  +A +DL+ R  G +
Sbjct: 967  LRGRVGRSRERGYAYFLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNV 1026

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG +QSG         +L+  L+  A +  +      P       + +RI L
Sbjct: 1027 LGAEQSGH--VAGVGFDLYVRLVGEAVEAFRAAADGKPITMDEGTKEVRIDL 1076


>gi|78184749|ref|YP_377184.1| transcription-repair coupling factor [Synechococcus sp. CC9902]
 gi|78169043|gb|ABB26140.1| Transcription-repair coupling factor [Synechococcus sp. CC9902]
          Length = 1192

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 142/463 (30%), Positives = 235/463 (50%), Gaps = 20/463 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT            +A  +  L   +Q  +  G     +G    ++  + P+ PT  Q  
Sbjct: 571  WTKAKDRAKKAVRKVALDLVKLYAERQ--QSNGFAFPPDGPWQTELEESFPYEPTPDQLK 628

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            +  D+ +DM +   M R++ GDVG GKT VA+ A+  A+ AG Q  ++AP  +LAQQH+ 
Sbjct: 629  STTDVKRDMERAEPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWR 688

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             + +      I V ++        R+  LE +  G    ++GTH L   S  + +L L++
Sbjct: 689  TLSERFAPYPIKVALLNRFRTTTERKSILEGLKQGTIDAVVGTHQLLSKSTSFQQLGLLV 748

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  ++S IT  P  R+PIK
Sbjct: 749  VDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIK 808

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T +  ++  + V   ++  L  G + +++ P++E  +        +  N L        +
Sbjct: 809  THLASLD-PEAVRSAIRQELDRGGQVFYVVPRVEGIE--------DVANGLRTMLPGLKL 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++ + ES M +F  G   +++ TT++E G+D+   + I+IE+A  FGLAQL+Q
Sbjct: 860  LVAHGQMAEGELESAMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFGLAQLYQ 919

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L Y  +  LS N+  RL  ++       G+ +A  D++ R  G +
Sbjct: 920  LRGRVGRSGIQAHAWLFYPGNASLSDNARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNL 979

Query: 634  LGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHILTQDPDL 673
            LG++QSG  + +        L +SL EI  +D   +     DL
Sbjct: 980  LGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPSVDDTQVDL 1022


>gi|257066460|ref|YP_003152716.1| transcription-repair coupling factor [Anaerococcus prevotii DSM
            20548]
 gi|256798340|gb|ACV28995.1| transcription-repair coupling factor [Anaerococcus prevotii DSM
            20548]
          Length = 1170

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 144/441 (32%), Positives = 232/441 (52%), Gaps = 24/441 (5%)

Query: 231  DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            DE+    + L   R + K       + +     +   + P+  T SQ  +I++I  DM  
Sbjct: 586  DEIADDLVELYAKRSKIKGH---AFSKDTTWQNEFENSFPYEETYSQIRSIEEIKNDMES 642

Query: 291  KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
               M R+L GDVG GKT VA+ A   A+  G Q   + P  ILA QHYE IK+      +
Sbjct: 643  DKPMDRLLCGDVGFGKTEVAIRAAFKAIMDGYQVAFLVPTTILANQHYETIKRRFDKFPV 702

Query: 351  IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             V++I+   P +  +  ++ +  G+  +IIGTH L    + Y  L L+I+DE+ RFGV+ 
Sbjct: 703  NVQVISRFNPGSKNKLIIKDLKAGKVDLIIGTHRLLSKDVGYKNLGLLIIDEEQRFGVKH 762

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--I 468
            + KL +  ++  VL ++ATPIPRTL ++  G  D+S + E P  R P+ T ++  +   I
Sbjct: 763  KEKLKELKSSLDVLTLSATPIPRTLQMSLSGIRDLSTLDEAPEERMPVNTYVLEYDNGII 822

Query: 469  DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSD 527
             + IE     L+   + Y++  ++ + +        + +N L E    ++IAIIHGR+S 
Sbjct: 823  KQAIE---RELNRNGQVYFVYNRVNDIE--------KLYNHLIELVPDANIAIIHGRISP 871

Query: 528  IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
               E  M  F +G   +L++TT+IE G+D+ + + III +++  GL QL+QL+GR+GRG 
Sbjct: 872  KQIEKTMLEFIDGEIDILLSTTIIETGMDISNVNTIIIYDSDMMGLGQLYQLKGRIGRGN 931

Query: 588  EISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMP 642
              S     Y     LS+ S  RL  +++  D   G+ IA +DL+ R  G +LG  QSG  
Sbjct: 932  RSSYAYFTYRTGKILSEISEKRLKSIRDFSDFGSGYKIAMKDLELRGAGNLLGESQSGHV 991

Query: 643  KFLIAQPELHDSLLEIARKDA 663
            + +     L+   L+ A + A
Sbjct: 992  EAIGYD--LYVKFLQEAVEKA 1010


>gi|78779345|ref|YP_397457.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9312]
 gi|78712844|gb|ABB50021.1| transcription-repair coupling factor [Prochlorococcus marinus str.
            MIT 9312]
          Length = 1174

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 140/465 (30%), Positives = 239/465 (51%), Gaps = 20/465 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     + +A  I  L  +++  K    P   +G    ++  + P+ PT  Q 
Sbjct: 562  EWERIKDKNKKQIKKVAVDILKLYAKREKLKGHIYP--EDGPWQDELEESFPYQPTPDQI 619

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +A+K+I  DM     M R++ GDVG GKT VA+ A+  A+ +G Q +++AP  ILAQQH+
Sbjct: 620  TAVKEIKSDMESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQVILLAPTTILAQQHW 679

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              I        I V ++        R++    + + +  +++ TH +    I+   L L+
Sbjct: 680  RTINNRFSPYPIKVSLLNRFKTVNERKEIYAGLKNNKIDLVVATHQILGKEIEIKNLGLL 739

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+Q+ K+ +  T   VL ++ATPIPRTL ++  G   +S +   P  R+ I
Sbjct: 740  VIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRSI 799

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            KT +  I+ +D +   +   L  G + +++ P+I +          +  N L   F +  
Sbjct: 800  KTYLSEID-MDVIRTAINQELDRGGQIFYVLPRISDID--------QAVNKLKNMFPNLK 850

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              I HG+M++ + E+ M SF NG   L+I TT+IE G+D+   + IIIE++  FGL+QL+
Sbjct: 851  FIIAHGQMNETELENSMISFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHKFGLSQLY 910

Query: 578  QLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGE 632
            QLRGRVGR    +   L Y     ++ ++  RL  +K       G+ +A +D++ R  G 
Sbjct: 911  QLRGRVGRSGIQAHAWLFYPNLNKINDSAKQRLKAIKDFSELGSGYQLAMKDMEIRGVGS 970

Query: 633  ILGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHILTQDPDLT 674
            +LG +QSG    +        LH+++ EI+ ++   +     DL 
Sbjct: 971  LLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEVSDTQIDLQ 1015


>gi|294054382|ref|YP_003548040.1| transcription-repair coupling factor [Coraliomargarita akajimensis
           DSM 45221]
 gi|293613715|gb|ADE53870.1| transcription-repair coupling factor [Coraliomargarita akajimensis
           DSM 45221]
          Length = 1133

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 142/466 (30%), Positives = 228/466 (48%), Gaps = 20/466 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
             +  + R A +       A LL +  Q  +  G     +    +      PF  T  Q 
Sbjct: 523 GAAWDKTRAAAEIATLDYAAELLNLHAQRSQAGGYEFPPDHPWQKDFEDAFPFKETPDQL 582

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI    QDM +   M R++ GDVG GKT VA+ A   AV AG Q  ++ P  +L QQH+
Sbjct: 583 RAIDATKQDMEKAESMDRLICGDVGFGKTEVAIRAALKAVLAGKQVALLVPTTVLCQQHF 642

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              K+      +I+++++        ++ +   A G+  I+IGTH L    + +  L L+
Sbjct: 643 NTFKERMARYPVIIDMVSRFRTARQNKEIIANTAEGKIDIVIGTHRLLSKDVHFNDLGLL 702

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+Q+  + +      +L ++ATPIPRTL L   G   +S I   P  R+PI
Sbjct: 703 IVDEEQRFGVKQKEAIKKLRADVDILTLSATPIPRTLYLAMAGARAMSVIETPPVDRRPI 762

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +TV+   +    +   ++     G + +++  ++   +    +           H   ++
Sbjct: 763 QTVVRSYD-PALIKSAIQAETDRGGQVFYLHNRVGTIEGVANQIR-------EMHPKLNV 814

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+ HG+M++   E +M  F  G   +L+ TT+IE GID+ + + +IIE A+ FGLAQL+Q
Sbjct: 815 AVGHGQMTEGALEKIMTKFVAGEFDVLVCTTIIESGIDIPNCNTLIIEGADRFGLAQLYQ 874

Query: 579 LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           +RGRVGR ++ +   LL   H  L   +  RL+ LK       GF IA  DL+ R  G +
Sbjct: 875 IRGRVGRFKQQAYAYLLLHRHAALVDQAQKRLNALKQHNQLGAGFRIAMRDLELRGAGNL 934

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
           LG +QSG         EL+  LL+  +  A+  L  +P    +R +
Sbjct: 935 LGSQQSGHI--AGVGFELYCQLLK--QSVAR--LKGEPGADRIRAE 974


>gi|254514466|ref|ZP_05126527.1| transcription-repair coupling factor [gamma proteobacterium NOR5-3]
 gi|219676709|gb|EED33074.1| transcription-repair coupling factor [gamma proteobacterium NOR5-3]
          Length = 1152

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 147/496 (29%), Positives = 239/496 (48%), Gaps = 22/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     +  H P  +    +W    R+       +A Q+  +  R++ ++ +     
Sbjct: 528  QLISRYAGSDPEHAPLHRLGSEQWDKAQRKAREKANDVAAQLLEVYARREARQGVQ--FT 585

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
               +  ++     PF  T  Q +AI+ + +DM     M R++ GDVG GKT VA+ A   
Sbjct: 586  DPEEDYERFAAGFPFEETPDQAAAIEAVERDMFAAGVMDRLVCGDVGFGKTEVAMRAAFI 645

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            A     Q  ++ P  +LAQQHY   +    N  + +E+I+     +  +    R+  G  
Sbjct: 646  ATANQRQVAVLVPTTLLAQQHYNSFRDRFANWPVKIEVISRFRAASDTKDVARRLEAGDV 705

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I+IGTH L Q  I++  L L+I+DE+HRFGV+Q+  +        +L +TATPIPRTL 
Sbjct: 706  DILIGTHKLIQSDIRFADLGLLIIDEEHRFGVRQKDSIKALRAEVDILTLTATPIPRTLN 765

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  D+S I   PA R  IKT +   +    + E +      G + +++  ++    
Sbjct: 766  MALGGMRDLSIIATPPARRLSIKTFVREQDH-GLIKEAVLRETLRGGQVFYVHNEV---- 820

Query: 497  ESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                R++ +R  +L E     SI + HG+M +   E VM  F +    +LI +T+IE GI
Sbjct: 821  ----RTIEQRAAALRELLPDLSIVVAHGQMHETQLERVMSDFYHQRHHILICSTIIETGI 876

Query: 556  DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK- 612
            D+ +A+ III+ A+ FGLAQLHQLRGRVGR    +   LL  P   ++ ++  RL  ++ 
Sbjct: 877  DIPNANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLCPPASAMTTDASKRLEAIEA 936

Query: 613  --NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
                  G+ +A  DL+ R  GE+LG +QSG          ++  LL  A +  +      
Sbjct: 937  AGELGAGYQLATHDLEIRGAGELLGDEQSGQI--QSVGFAMYSQLLRQAVEALRR--GDI 992

Query: 671  PDLTSVRGQSIRILLY 686
            PD+ +       + L+
Sbjct: 993  PDVDAPLQAITEVNLH 1008


>gi|139438721|ref|ZP_01772205.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC
            25986]
 gi|133775801|gb|EBA39621.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC
            25986]
          Length = 1210

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 142/451 (31%), Positives = 229/451 (50%), Gaps = 17/451 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT    +     + LA  +  L  R+      GI    +     ++  + P+  T+ Q 
Sbjct: 604  DWTRATNKARKNAKKLAFDLVDLYTRRSS--ITGIACPPDTPEQIEMEESFPYDETRDQL 661

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI DI  DM     M R+L GDVG GKT VAL A    V++G Q +++ P  ILAQQHY
Sbjct: 662  EAIADIKADMEAPKPMDRLLCGDVGFGKTEVALRAAFKCVDSGRQVMVLCPTTILAQQHY 721

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +      + VE+++     A +++AL+  A G   ++IGTH L    +    L +V
Sbjct: 722  ETFFERFAPFGLEVEVLSRFRTPAQQKRALKAFAEGTIDVLIGTHRLLSADVNPKNLGMV 781

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGVQ + +L        VL ++ATPIPRT+ + + G  D+S IT  P GR+P+
Sbjct: 782  IIDEEQRFGVQHKEQLKNLREQIDVLTLSATPIPRTMQMATSGVRDMSLITTPPTGRRPV 841

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
               +   +  D V   +++ +  G + Y++  +++   ++  R              + +
Sbjct: 842  IVHVGEYD-PDVVSAAIRLEVGRGGQVYYVSNRVKTIDDAVARVHEA-------APEARV 893

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS  + E VM  F      +LIATT++E GID   A+ +IIE+++  GLAQL+Q
Sbjct: 894  GVAHGKMSPREVEDVMIEFATKKIDVLIATTIVESGIDNATANTLIIEDSQRLGLAQLYQ 953

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            L+GRVGR    +    ++    PL++ +  RL+ L   +D   G  IA  DL+ R  G +
Sbjct: 954  LKGRVGRSATQAYAYFMFPGELPLTEEATARLTALSEFQDLGSGMRIAMRDLEIRGAGSL 1013

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            +G +Q G         +L   +L  A  +A+
Sbjct: 1014 MGAEQHG--NLSSVGFDLFTQMLGQAVAEAR 1042


>gi|91215486|ref|ZP_01252457.1| transcription-repair coupling factor [Psychroflexus torquis ATCC
           700755]
 gi|91186438|gb|EAS72810.1| transcription-repair coupling factor [Psychroflexus torquis ATCC
           700755]
          Length = 1121

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 136/451 (30%), Positives = 228/451 (50%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W S   +  A  + +A  +  L  +++ +   G     +  +  ++  +  +  T  Q  
Sbjct: 505 WKSLKNKTKARVKKVAFDLIKLYAKRKLE--KGFQYGPDSHLQHELEASFIYEDTPDQGI 562

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D+  DM ++  M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  ILA QH++
Sbjct: 563 ATQDVKSDMEKEQPMDRLVCGDVGFGKTEIAIRAAFKAVDNGKQVAVLVPTTILAFQHHK 622

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +      + V+ +        RR  LE +  G   I+IGTH L   ++++  L L+I
Sbjct: 623 TFTERLSEFPVTVDYLNRFRTTKERRSVLEGLEDGSVDIVIGTHQLVSKAVKFKNLGLLI 682

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL         L +TATPIPRTL  + +   D+S I   P  R PI+
Sbjct: 683 IDEEQKFGVAVKDKLKTIKANVDTLTLTATPIPRTLQFSLMAARDLSTIKTPPPNRYPIE 742

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +I  +  D++ + +   +  G + ++I  +IE   E            L     + I 
Sbjct: 743 THVIRFSE-DQIRDAVSYEIERGGQVFFINNRIENINEVAG-----LIQRLVPD--AKIG 794

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E++M  F N    +L++TT+IE G+DV +A+ I I +A +FG++ LHQ+
Sbjct: 795 IGHGQMEGKKLENLMLQFMNNEFDVLVSTTIIESGLDVTNANTIFINSANNFGMSDLHQM 854

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C L+  P   ++ ++  RLS L+   D   G  IA +DL+ R  G++L
Sbjct: 855 RGRVGRSNKKAFCYLITPPLTMMTDDAKKRLSALEQFSDLGSGINIAMKDLEIRGAGDLL 914

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG    +      +  +L  A ++ K 
Sbjct: 915 GGEQSGFISDIGFD--TYQKILNEAIQELKE 943


>gi|259500996|ref|ZP_05743898.1| transcription-repair-coupling factor [Lactobacillus iners DSM
           13335]
 gi|302190555|ref|ZP_07266809.1| transcription-repair coupling factor [Lactobacillus iners AB-1]
 gi|259167690|gb|EEW52185.1| transcription-repair-coupling factor [Lactobacillus iners DSM
           13335]
          Length = 1110

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 134/446 (30%), Positives = 228/446 (51%), Gaps = 19/446 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW           E +A ++  L +      E G     + ++ +      P+  T  Q 
Sbjct: 510 EWAKTKCRVQEKIEDIADEL--LAIYAHRATEKGFAFLPDDELQRDFEAAFPYLETPDQI 567

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P  ILA+QHY
Sbjct: 568 KAIREIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVPTTILAEQHY 627

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +  ++  + V ++     +    +    +++G+  I++GTH +    I++  L L+
Sbjct: 628 ATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRDIKFKNLGLL 687

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S +   PA R PI
Sbjct: 688 IIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPI 747

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +      + V E     L+   + +++  +I++          ++   L +    + 
Sbjct: 748 QTYV-TEETPNIVREACLRELARNGQIFFLHNKIQDID--------QKVAYLSQLIPEAR 798

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++ENA+ +GL+QL+
Sbjct: 799 IEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLVENADTYGLSQLY 858

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY     L++ S  RL+ +++      GF IA  DL  R  G 
Sbjct: 859 QLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKIAMRDLSIRGAGN 918

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEI 658
           ILG +Q G    +     L+  +L+ 
Sbjct: 919 ILGKQQHGFIDSVGYD--LYAQMLDQ 942


>gi|329920532|ref|ZP_08277264.1| transcription-repair coupling factor [Lactobacillus iners SPIN
           1401G]
 gi|328936208|gb|EGG32661.1| transcription-repair coupling factor [Lactobacillus iners SPIN
           1401G]
          Length = 1110

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 133/446 (29%), Positives = 228/446 (51%), Gaps = 19/446 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW           E +A ++  L +      E G     + ++ +      P+  T  Q 
Sbjct: 510 EWAKTKCRVQEKIEDIADEL--LAIYAHRATEKGFAFLPDDELQRDFEAAFPYLETPDQI 567

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P  ILA+QHY
Sbjct: 568 KAIREIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVPTTILAEQHY 627

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +  ++  + V ++     +    +    +++G+  I++GTH +    I++  L L+
Sbjct: 628 ATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRDIKFKNLGLL 687

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S +   PA R PI
Sbjct: 688 IIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPI 747

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +      + V E     L+   + +++  +I++          ++   L +    + 
Sbjct: 748 QTYV-TEETPNIVREACLRELARNGQIFFLHNKIQDID--------QKVAYLSQLIPEAR 798

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++ENA+ +GL+QL+
Sbjct: 799 IEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLVENADTYGLSQLY 858

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY     L++ S  RL+ +++      GF IA  DL  R  G 
Sbjct: 859 QLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKIAMRDLSIRGAGN 918

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEI 658
           +LG +Q G    +     L+  +L+ 
Sbjct: 919 VLGKQQHGFIDSVGYD--LYAQMLDQ 942


>gi|290889683|ref|ZP_06552772.1| hypothetical protein AWRIB429_0162 [Oenococcus oeni AWRIB429]
 gi|290480680|gb|EFD89315.1| hypothetical protein AWRIB429_0162 [Oenococcus oeni AWRIB429]
          Length = 1188

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 238/452 (52%), Gaps = 18/452 (3%)

Query: 214  KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                 +W    R   A  E +A ++  L  +++ +  +G   +V+ +  Q+      +  
Sbjct: 578  SLNSTDWAKTKRRVTAKVEDIADELIALYSKREGE--VGYAFSVDDQRQQEFDDGFAYPE 635

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q  +IK+I  DM  K  M R+L GDVG GKT VA  A   A+E   Q   + P  IL
Sbjct: 636  TVDQLRSIKEIKSDMENKKPMDRLLVGDVGFGKTEVAFRAAFKAIEDHKQVAFLTPTTIL 695

Query: 334  AQQHYEF-IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            +QQHY+  I++++   +I + +++        ++ ++++   Q  ++IGTH L    + +
Sbjct: 696  SQQHYQTAIERFSDFPEIKIAMLSRFNTAGQNKEVIKKLKAHQLDMVIGTHRLLSKDVAF 755

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+ RFGV+ + K+ Q      VL +TATPIPRTL +  +G  D+S +   P
Sbjct: 756  DDLGLLIIDEEQRFGVKHKEKIKQLRANVDVLTLTATPIPRTLNMALVGARDLSVLETPP 815

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R PI+T ++  N    + + ++  LS G + +++  ++++ + +              
Sbjct: 816  ANRFPIQTYVLEEN-WPVIADAIEKELSRGGQTFFLHNRVQDIERTVGEIQ-------RI 867

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               +++  IHG+M++   E V+  F NG   +L+ TT+IE G+D+ +A+ +I+EN+E FG
Sbjct: 868  VPDANVGYIHGQMNETQLEDVLMDFLNGIYDVLVTTTIIETGVDIPNANTLIVENSERFG 927

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            L+QL+QLRGR+GR   ++     Y      ++++  RL  +++      GF +A  DL  
Sbjct: 928  LSQLYQLRGRIGRSNRLAYAYFTYPGDRQPTEDAQKRLEAIRDFTELGSGFKLAMRDLSI 987

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G++LG +Q G         EL+  +L+ A
Sbjct: 988  RGAGDLLGKQQHGFID--SVGYELYQQMLQEA 1017


>gi|33240450|ref|NP_875392.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33237978|gb|AAQ00045.1| Transcription-repair coupling factor [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 1170

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 136/449 (30%), Positives = 231/449 (51%), Gaps = 22/449 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           WT            +A  +  L    +     G     +G   +++    P+  T  Q  
Sbjct: 559 WTKAKERAKKSISRVAIDLIKLYA--ERSNSQGFSFPKDGPWQRELEEAFPYEATPDQIK 616

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A+ +I  DM +   M R++ GDVG GKT VA+ A+  A+ AG Q  I+AP  +LAQQH+ 
Sbjct: 617 AVSEIKSDMEKSFPMDRLVCGDVGFGKTEVAIRALFKAITAGKQVAILAPTTVLAQQHWR 676

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            +        I V ++      + +++  + + +G    I+GTH L   +I+Y  L L++
Sbjct: 677 TLTDRFAPYPIKVSLLNRFKSSSEKKEIAKSLKNGTIDAIVGTHLLLSKNIEYKDLGLLV 736

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ RFGV Q+ K+        VL +TATPIPRTL ++  G  ++S IT  P  R+ IK
Sbjct: 737 VDEEQRFGVNQKEKIKSLKKNIDVLTLTATPIPRTLYMSLSGVREMSLITTPPPQRRAIK 796

Query: 460 TVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
           T ++  ++ +E+I   +   +  G + +++ P+IE  +        E    + +   +  
Sbjct: 797 THLV--SKENEIIRSAICQEIGRGGQIFYVVPRIEGIE--------EVATEIKQMVPNIK 846

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + I HG+M++ + E+ M +F  G   L++ TT+IE G+D+   + I+IE+A  FGL+QL+
Sbjct: 847 LIIAHGQMNEGELENAMIAFNAGEADLMLCTTIIESGLDIPRVNTILIEDAHKFGLSQLY 906

Query: 578 QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGRVGR    +   L +     ++ N+  RL  ++       G+ +A  D++ R  G 
Sbjct: 907 QLRGRVGRSGVQAHAWLFFPQDKEVTNNASQRLKAIQEFSELGSGYQLAMRDMEIRGVGN 966

Query: 633 ILGIKQSGMPKFLIAQP---ELHDSLLEI 658
           ++GI+QSG  + +        LH+S+ EI
Sbjct: 967 LIGIQQSGQMEIIGFDLYMEILHESIAEI 995


>gi|116490296|ref|YP_809840.1| transcription-repair coupling factor [Oenococcus oeni PSU-1]
 gi|116091021|gb|ABJ56175.1| transcription-repair coupling factor [Oenococcus oeni PSU-1]
          Length = 1188

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 135/452 (29%), Positives = 238/452 (52%), Gaps = 18/452 (3%)

Query: 214  KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                 +W    R   A  E +A ++  L  +++ +  +G   +V+ +  Q+      +  
Sbjct: 578  SLNSTDWAKTKRRVTAKVEDIADELIALYSKREGE--VGYAFSVDDQRQQEFDDGFAYPE 635

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q  +IK+I  DM  K  M R+L GDVG GKT VA  A   A+E   Q   + P  IL
Sbjct: 636  TVDQLRSIKEIKSDMENKKPMDRLLVGDVGFGKTEVAFRAAFKAIEDHKQVAFLTPTTIL 695

Query: 334  AQQHYEF-IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            +QQHY+  I++++   +I + +++        ++ ++++   Q  ++IGTH L    + +
Sbjct: 696  SQQHYQTAIERFSDFPEIKIAMLSRFNTAGQNKEVIKKLKAHQLDMVIGTHRLLSKDVAF 755

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+ RFGV+ + K+ Q      VL +TATPIPRTL +  +G  D+S +   P
Sbjct: 756  DDLGLLIIDEEQRFGVKHKEKIKQLRANVDVLTLTATPIPRTLNMALVGARDLSVLETPP 815

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R PI+T ++  N    + + ++  LS G + +++  ++++ + +              
Sbjct: 816  ANRFPIQTYVLEEN-WPVIADAIEKELSRGGQTFFLHNRVQDIERTVGEIQ-------RI 867

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               +++  IHGRM++   E V+  F NG   +L+ TT+IE G+D+ +A+ +I+EN+E FG
Sbjct: 868  VPDANVGYIHGRMNETQLEDVLMDFLNGIYDVLVTTTIIETGVDIPNANTLIVENSERFG 927

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            L+QL+QLRGR+GR   ++     Y      ++++  RL  +++      GF +A  DL  
Sbjct: 928  LSQLYQLRGRIGRSNRLAYAYFTYPGDRQPTEDAQKRLEAIRDFTELGSGFKLAMRDLSI 987

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G++LG +Q G         EL+  +L+ A
Sbjct: 988  RGAGDLLGKQQHGFID--SVGYELYQQMLQEA 1017


>gi|322392420|ref|ZP_08065880.1| transcription-repair coupling factor [Streptococcus peroris ATCC
            700780]
 gi|321144412|gb|EFX39813.1| transcription-repair coupling factor [Streptococcus peroris ATCC
            700780]
          Length = 1167

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 151/500 (30%), Positives = 248/500 (49%), Gaps = 31/500 (6%)

Query: 214  KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            K  D  +    ++     E +A  +  L    +  +  G   + + +         P+  
Sbjct: 558  KLNDGHFKKAKQKVKNQVEDIADDLIKLYA--ERSQLRGYAFSKDDEDQVAFDEAFPYVE 615

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T+ Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 616  TEDQLRSIEEIKKDMQTPQPMDRLLVGDVGFGKTEVAMRAAFKAVNNHKQVVVLVPTTVL 675

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            AQQHY   K+  +   + V++++    +  + + LE++  GQ  I+IGTH +    +++ 
Sbjct: 676  AQQHYSNFKERFEQFAVNVDVLSRFRSKKEQIETLEKLKKGQVDILIGTHRVLSKDVEFA 735

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 736  DLGLIIIDEEQRFGVKHKEALKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 795

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             R P++T ++  N    + + +   +  G + Y++  +++  +        ++ + L E 
Sbjct: 796  NRYPVQTYVLEQND-HVIRDAVLREIDRGGQVYYLYNKVDTIE--------KKVSELQEL 846

Query: 514  FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 847  IPEASIGFVHGQMSEIRLENTLLDFIEGEYDILVTTTIIETGVDIPNANTLFIENADHMG 906

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
            L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 907  LSTLYQLRGRVGRSNRIAYAYLMYRPDKSLTEVSEKRLEAIKGFTELGSGFKIAMRDLSI 966

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA------------RKDAKHILTQDPDLTS 675
            R  G +LG  QSG         EL+  LL+ A            + +A+ IL  D  L  
Sbjct: 967  RGAGNLLGSSQSGFID--SVGFELYSQLLDEAIAKKNGTDKNREKGNAELILQIDAYLPD 1024

Query: 676  VRGQSIRILLYLYQYNEAFQ 695
                  R  + +Y+      
Sbjct: 1025 EYISDERHKIEIYKRIRQID 1044


>gi|296169893|ref|ZP_06851505.1| transcription-repair coupling factor [Mycobacterium parascrofulaceum
            ATCC BAA-614]
 gi|295895449|gb|EFG75151.1| transcription-repair coupling factor [Mycobacterium parascrofulaceum
            ATCC BAA-614]
          Length = 1201

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 137/472 (29%), Positives = 232/472 (49%), Gaps = 17/472 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +AG++  L  ++Q     G     +     ++     F+ T  Q 
Sbjct: 576  DWANTKTKARRAVREIAGELVALYAKRQA--SPGHAFAPDTPWQAEMEDAFGFTETVDQL 633

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 634  TAITEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 693

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +          + V+ ++     A  R  +E +A G   ++IGTH L Q  +++  L LV
Sbjct: 694  QTFTDRMAGFPVTVKGLSRFTDNAESRAVIEGLADGSVDVVIGTHRLLQTGVRWKDLGLV 753

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 754  VVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 813

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   L+  L    + +++  ++             R   L     + +
Sbjct: 814  LTYVGPQDD-KQVAAALRRELLRDGQVFYVHNRVSSID-----RTAARIRELVPE--ARV 865

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 866  VVAHGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 925

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 926  LRGRVGRSRERGYAYFLYPPHAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNV 985

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG++QSG         +L+  L+  A +  +         T+   + +RI L
Sbjct: 986  LGVEQSGH--VAGVGFDLYVRLVGEAVEAYRAAADGQTVTTAEEPKDVRIDL 1035


>gi|293400065|ref|ZP_06644211.1| transcription-repair coupling factor [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306465|gb|EFE47708.1| transcription-repair coupling factor [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 1149

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 136/454 (29%), Positives = 235/454 (51%), Gaps = 19/454 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A    LA ++  L   +   + IG     +  + ++   +  +  T  Q 
Sbjct: 551 EWEKTKKKVSAKIAELADRLIHLYANR--DEHIGHAFAKDTAMQKEFEDDFDYELTIDQA 608

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A+K+I  DM     M R+L GDVG GKT VA  A   AV    Q   + P  IL+ QH+
Sbjct: 609 KAVKEIKSDMESSKPMDRLLCGDVGFGKTEVAARAAFKAVSDNKQVAFLCPTTILSLQHF 668

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +  +   +N  + + ++   +   ++++ ++ +  G   I+IGTH L    IQ+  L L+
Sbjct: 669 KTFQHRFRNFPVNIAVVNRFIKPQNQKQIIKDLKEGNLDILIGTHRLLSKDIQFKDLGLL 728

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + K+ +   +  VL ++ATPIPRTL ++ +G   +S++   P  R P+
Sbjct: 729 VIDEEQRFGVEHKEKIKELKNSVDVLSLSATPIPRTLQMSLIGIRSLSQLETPPLNRMPV 788

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
           +T +I  N    + E ++  L+   + +++   ++E               L E      
Sbjct: 789 QTYVIEKN-FSMIKEIIQRELARNGQVFYLYNNVKEI--------YNVARKLREALPDVE 839

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I + HG+MS  D E VM  F +   ++L+ TT+IE GID+ +A+ I+IE+A+HFGL+QL+
Sbjct: 840 IGVAHGQMSRDDIEDVMMQFTDNQYQVLVCTTIIETGIDIPNANTILIEDADHFGLSQLY 899

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           Q++GRVGR + ++   L+Y P   LS+ +  RL  +K       G+ IA  DL  R  G+
Sbjct: 900 QIKGRVGRSDRLAYAYLMYSPQRQLSEVAMKRLKSIKEFTQLGSGYKIAMRDLTIRGAGD 959

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           +LG +Q+G         +++  +L  A  + K I
Sbjct: 960 MLGPQQAGFIDT--VGIDMYIEMLNSAIMEKKGI 991


>gi|325912458|ref|ZP_08174853.1| transcription-repair coupling factor [Lactobacillus iners UPII
           143-D]
 gi|325475800|gb|EGC78971.1| transcription-repair coupling factor [Lactobacillus iners UPII
           143-D]
          Length = 1110

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 133/446 (29%), Positives = 229/446 (51%), Gaps = 19/446 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW           E +A ++  L +      E G     + ++ +    + P+  T  Q 
Sbjct: 510 EWAKTKCRVQEKIEDIADEL--LAIYAHRATEKGFAFLPDDELQRDFEASFPYLETPDQI 567

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P  ILA+QHY
Sbjct: 568 KAIREIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVPTTILAEQHY 627

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +  ++  + V ++     +    +    +++G+  I++GTH +    I++  L L+
Sbjct: 628 ATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRDIKFKNLGLL 687

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S +   PA R PI
Sbjct: 688 IIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPI 747

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +      + V E     L+   + +++  +I++          ++   L +    + 
Sbjct: 748 QTYV-TEETPNIVREACLRELARNGQIFFLHNKIQDID--------QKVAYLSQLIPEAR 798

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++ENA+ +GL+QL+
Sbjct: 799 IEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLVENADTYGLSQLY 858

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY     L++ S  RL+ +++      GF IA  DL  R  G 
Sbjct: 859 QLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKIAMRDLSIRGAGN 918

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEI 658
           +LG +Q G    +     L+  +L+ 
Sbjct: 919 VLGKQQHGFIDSVGYD--LYAQMLDQ 942


>gi|213612520|ref|ZP_03370346.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 542

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 150/414 (36%), Positives = 222/414 (53%), Gaps = 17/414 (4%)

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY
Sbjct: 1   QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHY 60

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +  +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+
Sbjct: 61  DNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLL 120

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +
Sbjct: 121 IVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 180

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           KT +   + +  V E +   +  G + Y++   +E     N +   ER   L     + I
Sbjct: 181 KTFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARI 232

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           AI HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQ
Sbjct: 233 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 292

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGR    +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+
Sbjct: 293 LRGRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 352

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           LG +QSG  + +     L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 353 LGEEQSGSMETIGFS--LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 402


>gi|309807000|ref|ZP_07700982.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           03V1-b]
 gi|308166620|gb|EFO68817.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           03V1-b]
          Length = 1110

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 134/446 (30%), Positives = 228/446 (51%), Gaps = 19/446 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW           E +A ++  L +      E G     + ++ +      P+  T  Q 
Sbjct: 510 EWAKTKCRVQEKIEDIADEL--LAIYAHRATEKGFAFLPDDELQRDFEAAFPYLETPDQI 567

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P  ILA+QHY
Sbjct: 568 KAIREIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVPTTILAEQHY 627

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +  ++  + V ++     +    +    +++G+  I++GTH +    I++  L L+
Sbjct: 628 ATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRDIKFKNLGLL 687

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S +   PA R PI
Sbjct: 688 IIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPI 747

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +      + V E     L+   + +++  +I++          ++   L +    + 
Sbjct: 748 QTYV-TEETPNIVREACLRELARNGQIFFLHNKIQDID--------QKVAYLSQLIPEAR 798

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++ENA+ +GL+QL+
Sbjct: 799 IEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLVENADTYGLSQLY 858

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY     L++ S  RL+ +++      GF IA  DL  R  G 
Sbjct: 859 QLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKIAMRDLSIRGAGN 918

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEI 658
           ILG +Q G    +     L+  +L+ 
Sbjct: 919 ILGKQQHGFIDSVGYD--LYAQMLDQ 942


>gi|210632030|ref|ZP_03297170.1| hypothetical protein COLSTE_01063 [Collinsella stercoris DSM 13279]
 gi|210159746|gb|EEA90717.1| hypothetical protein COLSTE_01063 [Collinsella stercoris DSM 13279]
          Length = 1195

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 142/451 (31%), Positives = 226/451 (50%), Gaps = 17/451 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W+    +     + LA  +  L  R+      G     +     ++  + P+  T  Q 
Sbjct: 584  DWSRATAKARKSAKKLAFDLVDLYTRRSS--ITGFAFGPDSAAQVEMEESFPYDETHDQL 641

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI DI  DM     M R+L GDVG GKT VAL A    V+ G Q +++ P  ILAQQHY
Sbjct: 642  DAIADIKADMESTKPMDRLLCGDVGFGKTEVALRAAFKCVDGGRQVMVLCPTTILAQQHY 701

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +      + VE+++       +R+AL   A G+  ++IGTH L    +  ++L LV
Sbjct: 702  ETFFERFAPFGVEVEVLSRFRTPGQQRRALAAFAEGKVDVLIGTHRLLSADVNPHELGLV 761

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGVQ + +L        VL ++ATPIPRT+ +   G  D+S IT  P GR+ +
Sbjct: 762  IIDEEQRFGVQHKEQLKNMREQIDVLTLSATPIPRTMQMAMSGVRDMSLITTPPTGRRAV 821

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
               +   +  D V   +++ +  G + Y++  +++   ++  R        L     + I
Sbjct: 822  AVHVGEYD-PDVVSAAIRLEIGRGGQVYYVSNRVKTIDDAVERV-------LEAAPEARI 873

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS  + E VM  F      +LIATT++E GID   A+ +IIE+++  GLAQL+Q
Sbjct: 874  GVAHGKMSPREVEDVMVQFATKKIDVLIATTIVESGIDNASANTLIIEDSQRLGLAQLYQ 933

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            L+GRVGR    +    ++    PL++ +  RL+ L   +D   G  IA  DL+ R  G +
Sbjct: 934  LKGRVGRSATQAYAYFMFPGELPLTEEATARLTALSEFQDLGSGMRIAMRDLEIRGAGSL 993

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            +G +Q G         +L   +L  A  +A+
Sbjct: 994  VGAEQHG--NLSSVGFDLFTQMLGQAVAEAR 1022


>gi|167041981|gb|ABZ06718.1| putative TRCF domain protein [uncultured marine microorganism
           HF4000_141E02]
          Length = 1150

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 151/426 (35%), Positives = 216/426 (50%), Gaps = 15/426 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +       +G       K  +       +  T+ Q   I+D+L DM+    M R++ G
Sbjct: 575 LEIYANRAIAVGKSHVANQKDYENFCDGFEYVLTQDQAKVIEDVLDDMAASKSMDRLVCG 634

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VAL A       G Q  ++ P  ILAQQH+E   +      I + I++    
Sbjct: 635 DVGFGKTEVALRAAFTCAINGYQVALLVPTTILAQQHFETFNERFSEWPIAINILSRLQT 694

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
             +  +    I  G+A IIIGTHAL  D + Y  L LVIVDE+HRFGV+ + KL      
Sbjct: 695 SKNNNQVRAGIEKGKADIIIGTHALLSDKVVYKNLGLVIVDEEHRFGVRHKEKLKALRKD 754

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              L +TATPIPRTL +      DIS I   P GR P+KT I   ++   + E  +  +S
Sbjct: 755 VDYLALTATPIPRTLNMAIGELKDISMIATPPEGRIPVKTYISQWDK-SLIHEACQREIS 813

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G +  ++  +I++ +     ++ E    +      S+ I HGRM +   E VM  F N 
Sbjct: 814 RGGQVLFVHNRIDDIE-----NMAETIRQIIP--VGSLEIAHGRMKERSLERVMMKFYNN 866

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
              +L+AT++IE G+D+ +A+ III  A+ FGLAQLHQLRGRVGR E  S   L+     
Sbjct: 867 EFDILLATSIIESGLDIPNANTIIINRADRFGLAQLHQLRGRVGRSERQSYAYLMIPSKH 926

Query: 600 -LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
            L+     RL  ++  ED   GF++A  DL+ R  GEILG +QSG  + +     L+  +
Sbjct: 927 TLTNEGRQRLEAIEAIEDLGVGFILATHDLEIRGAGEILGDEQSGQIQKIGFS--LYKDM 984

Query: 656 LEIARK 661
           L  A  
Sbjct: 985 LAQAID 990


>gi|193212321|ref|YP_001998274.1| transcription-repair coupling factor [Chlorobaculum parvum NCIB
           8327]
 gi|193085798|gb|ACF11074.1| transcription-repair coupling factor [Chlorobaculum parvum NCIB
           8327]
          Length = 1097

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 136/458 (29%), Positives = 227/458 (49%), Gaps = 15/458 (3%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P  +K       A++     +L      L+ +  + K   G     +    ++   +  F
Sbjct: 465 PNLSKLGSSKWSAKKEKVRKKLRDIAAKLIRIYAERKMTPGFAFGPDSIFQREFEASFMF 524

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q  AI+++ +DM   + M R++ GD G GKT +A+ A   AVE   Q  I+ P  
Sbjct: 525 EETPDQLKAIQEVKKDMQSPSPMDRLICGDAGFGKTEIAMRAAFKAVEGKKQVAILTPTT 584

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           IL  QH E   +   N  + + +++  +P+  +++ +ERIA G   I+IGTH L    + 
Sbjct: 585 ILTHQHAESFARRFANFPVNIAVLSRFVPRKEQKETIERIASGAVDIVIGTHRLVSKDVV 644

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+++DE+  FGV  + KL Q+      L M+ATPIPRT+  + LG  DIS ++  
Sbjct: 645 FKDLGLLVIDEEQHFGVDTKEKLRQQFPGVDTLTMSATPIPRTMQFSMLGARDISIVSTP 704

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R+P++T+I   +    V   +K  +    + +++  +I    E            L 
Sbjct: 705 PKNRQPVETIISEFD-AGVVQGAIKREIQREGQVFFLNNRIASLDEVER-----TIRELV 758

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            +  + IA  HG+M   + E++M  F N    +LIAT++I  G+D+ +A+ III  A+ F
Sbjct: 759 PY--ARIASAHGQMPARELENIMMDFMNQELDVLIATSIIGSGLDISNANTIIINRADMF 816

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLK 626
           GL+ L+QLRGRVGR E  + C L+  P   L + +  R++V++       G  +A  DL 
Sbjct: 817 GLSDLYQLRGRVGRSERKAYCYLVTPPLHTLKREAVQRIAVIETFTELGSGINVALRDLD 876

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            R  G +LG +QSG    +     L+  ++E    + K
Sbjct: 877 IRGAGNLLGAEQSGFIHEIGFD--LYQKMIEETVAELK 912


>gi|312874291|ref|ZP_07734323.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2052A-d]
 gi|311090164|gb|EFQ48576.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2052A-d]
          Length = 1110

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 134/446 (30%), Positives = 228/446 (51%), Gaps = 19/446 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW           E +A ++  L +      E G     + ++ +      P+  T  Q 
Sbjct: 510 EWAKTKCRVQEKIEDIADEL--LAIYAHRATEKGFAFLPDDELQRDFEAAFPYLETPDQI 567

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P  ILA+QHY
Sbjct: 568 KAIREIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVPTTILAEQHY 627

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +  ++  + V ++     +    +    +++G+  I++GTH +    I++  L L+
Sbjct: 628 ATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRDIKFKNLGLL 687

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + KL +      VL +TATPIPRTL ++ +G  D+S +   PA R PI
Sbjct: 688 IIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPI 747

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +      + V E     L+   + +++  +I++          ++   L +    + 
Sbjct: 748 QTYV-TEETPNIVREACLRELARNGQIFFLHNKIQDID--------QKVAYLSQLIPEAR 798

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +++ENA+ +GL+QL+
Sbjct: 799 IEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLVENADTYGLSQLY 858

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGR+GR   ++    LY     L++ S  RL+ +++      GF IA  DL  R  G 
Sbjct: 859 QLRGRIGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKIAMRDLSIRGAGN 918

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEI 658
           ILG +Q G    +     L+  +L+ 
Sbjct: 919 ILGKQQHGFIDSVGYD--LYAQMLDQ 942


>gi|302345727|ref|YP_003814080.1| transcription-repair coupling factor [Prevotella melaninogenica ATCC
            25845]
 gi|302150109|gb|ADK96371.1| transcription-repair coupling factor [Prevotella melaninogenica ATCC
            25845]
          Length = 1178

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 158/626 (25%), Positives = 281/626 (44%), Gaps = 41/626 (6%)

Query: 60   KISEIS-EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKT---EMLKN 115
             ++E+S E +  T+         F    R  ++  ++     + + FF          K 
Sbjct: 416  SVAELSGEGQDATV-----GALPFTPVNRTLHEGFVD---STLKVCFFTDHQIFDRFHKY 467

Query: 116  VFFEGRKITVTGKIKKLKNRIIMVHP-HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKI 174
                 +     GK+      +  + P  ++ H   D        +  +P G S     ++
Sbjct: 468  NLKSDKARQ--GKMALTMKELQEMEPGDFLVHV--DFGIGKFAGLVRVPAGDSYQEMIRL 523

Query: 175  IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
            + +    + V    + K  + K       E               W     +     + +
Sbjct: 524  VYQHNDIVDVSIHSLYK--ISKYRRGDSGE----PPRLSVLGSGAWDRLKEKAKKRIKDI 577

Query: 235  AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
            A  +  L  +++ +   G   + +  +  ++  +  +  T  Q  A +++ QDM     M
Sbjct: 578  ARDLIKLYAKRRRE--KGFAFSPDSFMQHELEASFLYEDTPDQLKATQELKQDMESARPM 635

Query: 295  LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
             R++ GDVG GKT VA+ A   A     Q  ++ P  +LA QHY+  KK  ++  + V+ 
Sbjct: 636  DRLVCGDVGFGKTEVAIRAAFKAAVDNKQVAVLVPTTVLAFQHYQTFKKRLKDMPVRVDY 695

Query: 355  ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
            ++        ++ LE +A G+  I++GTH L   S++++ L L+I+DE+ +FGV  + KL
Sbjct: 696  LSRARSAKQTKQVLEDLAEGKIDILVGTHKLIGKSVKWHDLGLLIIDEEQKFGVSTKEKL 755

Query: 415  TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
             Q  T    L M+ATPIPRTL  + +G  D+S +   P  R PI+T I   +  + + + 
Sbjct: 756  RQLKTNVDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIASFSH-EVIADA 814

Query: 475  LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
            +   +S   + Y++  +I    E                    IAI HG+M   + E ++
Sbjct: 815  INFEMSRNGQVYFVNDRISNLPEIANLIK-------KYVPNCRIAIGHGQMKPEELEEIV 867

Query: 535  DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
              F N    +L++TT++E GID+ +A+ III +A  FGL+ LHQ+RGRVGR  + + C L
Sbjct: 868  MGFMNYDYDVLLSTTIVENGIDISNANTIIINDAHRFGLSDLHQMRGRVGRSNKKAFCYL 927

Query: 595  LYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFL---I 646
            L  P   L+  +  RL  L+   D   GF +A +DL  R  G +LG +QSG  + L    
Sbjct: 928  LAPPLAALNPEARRRLEALETFSDLGSGFNLAMQDLDIRGAGNLLGSEQSGFMEDLGYET 987

Query: 647  AQPELHDSLLEIARKDAKHILTQDPD 672
             Q  L+ +++E+   + + +  ++ D
Sbjct: 988  YQKILNQAVMELKNDEFQDLYEEEMD 1013


>gi|113954991|ref|YP_730883.1| transcription-repair coupling factor [Synechococcus sp. CC9311]
 gi|113882342|gb|ABI47300.1| transcription-repair coupling factor [Synechococcus sp. CC9311]
          Length = 1180

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 143/485 (29%), Positives = 240/485 (49%), Gaps = 20/485 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W             +A  +  L    +  +  G    ++G    ++  + P+ PT  Q  
Sbjct: 559  WVKAKERATKAVRKVALDLVKLYA--ERHQAAGFAFPIDGPWQVELEDSFPYEPTSDQLK 616

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            A  D+ +DM +   M R++ GDVG GKT VA+ A+  A+ AG Q  ++AP  +LAQQH+ 
Sbjct: 617  ATVDVKRDMEKPEPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWR 676

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             + +      I V ++        R+  LE +  G    ++GTH L   +  + KL L++
Sbjct: 677  TLSERFAPYPIKVALLNRFRTAGERKTILEELKTGTIDAVVGTHQLLSKNTAFDKLGLLV 736

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  ++S IT  P  R+PIK
Sbjct: 737  VDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIK 796

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T +  ++  + V   ++  L  G + +++ P++E  +        E    L E      +
Sbjct: 797  THLAALDD-EAVRSSIRQELDRGGQVFYVVPRVEGIE--------EVAGKLREMLPGLKL 847

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++ + ES M +F  G   +++ TT++E G+D+   + I+IE+A  FGLAQL+Q
Sbjct: 848  LVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRVNTILIEDAHRFGLAQLYQ 907

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L Y     LS+ +  RL  ++       G+ +A  D++ R  G +
Sbjct: 908  LRGRVGRSGVQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNL 967

Query: 634  LGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            LG++QSG  +   F +    L +SL EI  +D   +     DL          ++   + 
Sbjct: 968  LGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPAVDDTQVDLQVTAFIPADWIVDADEK 1027

Query: 691  NEAFQ 695
              A++
Sbjct: 1028 MSAYR 1032


>gi|51849608|dbj|BAD42331.1| DNA helicase RecG [Nannochloris bacillaris]
          Length = 1341

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 187/583 (32%), Positives = 286/583 (49%), Gaps = 78/583 (13%)

Query: 160  YSLPTG-LSVDLFKKIIVEALSRLP----VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
            Y      L+ D   +   +AL  L        + + + +  K  F    EA   +H P  
Sbjct: 731  YPQKGKVLTSDKLAEAAEKALQMLEAGSNQWEDPVPEHIRHKYGFMGYLEALRGMHRPTG 790

Query: 215  AKDFEWTSPARERLAYDELLAGQIALLLMRK-----QFKKEIGIPINVEGKIAQKILRNI 269
             + +E     R RLA+ ELL  Q+ LLL R        K  I             + R +
Sbjct: 791  PEHYE---ACRRRLAFQELLVLQLKLLLQRATLRLPSNKNGIQGVAVTNFAQMDLVRRAL 847

Query: 270  PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            PF  T +Q+ A+  +   M+    M+ +LQGDVG GKT VA +++ AA  +G QA +MAP
Sbjct: 848  PFELTGAQDRALSAVTDGMTGWPPMMALLQGDVGCGKTAVAFLSVLAATGSGYQAAVMAP 907

Query: 330  IGILAQQHYEFIKKYTQNTQII-------------------VEIITGNMPQAHRRKALER 370
              ILA+QH+  +K+  +  + +                   V ++TG+  +A R +    
Sbjct: 908  TEILAEQHFSVLKRLIEEAKAVAEADPDDRDAAAAAASLPEVVLLTGSTKRAERNRIQAG 967

Query: 371  IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTAT 429
            +  G   +I+GTHAL  D++ +  L L I+DEQH+FGV QR  L  KA+  PH+L M+AT
Sbjct: 968  LEDGSIGVIVGTHALISDNVAFSNLGLAIIDEQHKFGVGQRAALLAKASPSPHILSMSAT 1027

Query: 430  PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEGKKAY 486
            PIPR+L L + G++ +  I E P GR P+ T ++  +      +V E ++  ++ G + Y
Sbjct: 1028 PIPRSLALVAHGELSLVTIDELPPGRIPVATQVVIDHDPTERAQVYEAMRREVAAGGQVY 1087

Query: 487  WICPQI--------------------EEKKESNFRSVVE-----------------RFNS 509
             +CP +                    E+ +E  ++   E                 R  +
Sbjct: 1088 IVCPLVDGKNAAGNSISGSSSMSSVDEDTQEHQYQQQREGTTGSTSGLKAAVHERDRLIA 1147

Query: 510  LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
              E   S   ++HGRMS  +KE+ + +F  G   +LI+TTV+EVG+DV  AS+II+E+A+
Sbjct: 1148 EGEIEASQCGVLHGRMSSEEKEAALAAFAAGKTPVLISTTVVEVGVDVPAASLIIVEHAD 1207

Query: 570  HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
             FGLAQLHQLRGRVGRG+  S+C L+     +     RL VL+    GF +AE D   R 
Sbjct: 1208 RFGLAQLHQLRGRVGRGDRASACYLITDK--AGEEAERLRVLERCSSGFDVAEADFAIRG 1265

Query: 630  EGEILGIKQSG---MPKFLIAQPELHDSLLEIARKDAKHILTQ 669
             GE++G +QSG   M    + Q      L+E AR+ A  ++  
Sbjct: 1266 AGEVIGRRQSGKEAMGGLKVCQLPQDGMLVEAAREAAAGLMAA 1308


>gi|229494982|ref|ZP_04388731.1| transcription-repair coupling factor [Rhodococcus erythropolis SK121]
 gi|229318076|gb|EEN83948.1| transcription-repair coupling factor [Rhodococcus erythropolis SK121]
          Length = 1208

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 131/458 (28%), Positives = 225/458 (49%), Gaps = 17/458 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +AG++  L   +Q     G     +    +++     F+ T  Q 
Sbjct: 596  DWANTKRKARKAVREIAGELVQLYAARQAA--PGHAFGPDTPWQKELEDAFAFTETIDQL 653

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 654  TVISEVKADMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHL 713

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +   +  + V  ++        ++ +  +A G+  I++GTH L Q  I++  L LV
Sbjct: 714  QTFTERMASFPVKVRGLSRFTDAKDSKEIIAGMAEGEIDIVVGTHRLLQTGIRWKDLGLV 773

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 774  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPI 833

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L    + +++  ++    ++  +        L     + +
Sbjct: 834  LTYVGAYAD-KQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKK-----IRELVPE--ARV 885

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++   E  +  F      +L+ TT+IE G+D+ +A+ +I+E A+  GL+QLHQ
Sbjct: 886  VVAHGQMNEDTLEKTVQGFWERDFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQ 945

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PL++ +Y RL+ +    D   G  +A +DL+ R  G +
Sbjct: 946  LRGRVGRSRERGYAYFLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNV 1005

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            LG +QSG         +L+  L+  A +  +      P
Sbjct: 1006 LGAEQSGH--VAGVGFDLYVRLVGEAVEAFRAAADGKP 1041


>gi|254527187|ref|ZP_05139239.1| transcription-repair coupling factor [Prochlorococcus marinus str.
            MIT 9202]
 gi|221538611|gb|EEE41064.1| transcription-repair coupling factor [Prochlorococcus marinus str.
            MIT 9202]
          Length = 1169

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 236/464 (50%), Gaps = 18/464 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L +  + +K  G     +G    ++  + P+ PT  Q +A+++I  DM     M R++ G
Sbjct: 582  LKLYAKREKLKGYIYPEDGPWQDELEESFPYQPTPDQITAVEEIKSDMESDKPMDRLVCG 641

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VA+ A+  A+ +G Q +++AP  ILAQQH+  I        I V ++     
Sbjct: 642  DVGFGKTEVAVRAIFKAITSGKQVILLAPTTILAQQHWRTINNRFSPYPIKVSLLNRFKT 701

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               R +    + + +  +++ TH +     +   L L+++DE+ RFGV+Q+ K+ +  T 
Sbjct: 702  VNERNEIYAGLKNNEIDLVVATHQILGKETEIKNLGLLVIDEEQRFGVRQKEKIKKIKTN 761

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL ++ATPIPRTL ++  G   +S +   P  R+ IKT +  I+ +D +   +   L 
Sbjct: 762  IDVLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRSIKTYLSEID-MDVIRTAINQELD 820

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
             G + +++ P+I +          +  N L   F S    + HG+M++ + E+ M +F N
Sbjct: 821  RGGQIFYVLPRISDID--------QAVNKLKIMFPSLKFIVAHGQMNETELENAMIAFNN 872

Query: 540  GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH-- 597
            G   L+I TT+IE G+D+   + IIIE++  FGL+QL+QLRGRVGR    +   L Y   
Sbjct: 873  GEVDLMICTTIIESGLDIPKVNTIIIEDSHKFGLSQLYQLRGRVGRSGVQAHAWLFYPNI 932

Query: 598  PPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP---EL 651
              ++  +  RL  +K       G+ +A +D++ R  G +LG +QSG    +        L
Sbjct: 933  NKINDAAKQRLKAIKDFSELGSGYQLAMKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEML 992

Query: 652  HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
            H+++ EI+ ++   +     DL          +L   +  EA++
Sbjct: 993  HEAISEISGQEIPEVNDTQIDLPINAFIPATWILNREEKLEAYK 1036


>gi|296140872|ref|YP_003648115.1| transcription-repair coupling factor [Tsukamurella paurometabola DSM
            20162]
 gi|296029006|gb|ADG79776.1| transcription-repair coupling factor [Tsukamurella paurometabola DSM
            20162]
          Length = 1218

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 137/472 (29%), Positives = 233/472 (49%), Gaps = 17/472 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +AG++  L   +      G     +    +++    PF+ T  Q 
Sbjct: 592  DWQNTKRKARKAVREIAGELVQLYAARNAA--PGHAFAPDSPWQREMEDAFPFTETVDQM 649

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 650  TVIGDVKSDMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHL 709

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +      Q   + V+ ++    +    + LE +A G   I++GTH L Q  +++  L LV
Sbjct: 710  KTFVDRMQGFPVTVKGLSRFTDRHETEQVLEGLADGSVDIVVGTHRLLQTGVRWKDLGLV 769

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 770  VVDEEQRFGVEHKEHIKALRTNVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPV 829

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   ++  L    + +++  ++    ++  +              + +
Sbjct: 830  LTYVGPYDN-KQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKQIRD-------MVPEARV 881

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   ES +  F N    +L+ TT++E G+D+ +A+ +I+E AE+ GL+QLHQ
Sbjct: 882  VVAHGQMGEEALESTVQGFWNREFDVLVCTTIVETGLDISNANTLIVERAENLGLSQLHQ 941

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PL++ +Y RLS +    +   G  +A +DL+ R  G +
Sbjct: 942  LRGRVGRSRERGYAYFLYPSEKPLTETAYDRLSTIAQNNELGAGMAVAMKDLEIRGAGNV 1001

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG +QSG         +L+  L+  A +  +      P       + +RI L
Sbjct: 1002 LGAEQSGH--VAGVGFDLYVRLVGEAVEAFRAAADGTPITLPEEQKEVRIDL 1051


>gi|15639335|ref|NP_218784.1| transcription-repair coupling factor (trcF) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025577|ref|YP_001933349.1| transcription-repair coupling factor [Treponema pallidum subsp.
           pallidum SS14]
 gi|3322623|gb|AAC65332.1| transcription-repair coupling factor (trcF) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018152|gb|ACD70770.1| transcription-repair coupling factor [Treponema pallidum subsp.
           pallidum SS14]
          Length = 1140

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 145/463 (31%), Positives = 235/463 (50%), Gaps = 17/463 (3%)

Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
              +        W +         E +A ++  L      K   G     + +       
Sbjct: 537 NKPHLDSLGSKSWETRKARVKKSVENIAQKLVELY--SLRKTTRGHAFPKDDEWQYAFEA 594

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
             P+  T  Q   I+++ QDM +   M R++ GDVG GKT +A+ A   AV  G Q V +
Sbjct: 595 AFPYEETDDQRICIEEVKQDMQEAVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQVVFL 654

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  +L +QH+  I    ++  + +E ++  +P++ ++  L ++AHG   +I+GTH L Q
Sbjct: 655 TPTTLLVEQHFRTICNRFKHFPVRIEKLSRFVPKSEQKDILAKLAHGDIDLIVGTHRLIQ 714

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             + +  L L+I+DE+ RFGVQ + KL Q  T    L ++ATPIPRTL +  L   D+S 
Sbjct: 715 KDVSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHMGMLKIRDMSL 774

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           +T  P GR PI+TVI   +  + V   ++  L    + +++  +IE  +           
Sbjct: 775 LTTPPEGRLPIETVIQQFD-PNLVATAIRKELDREGQIFYLHNRIENLESVKC-----ML 828

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L      SI + H  M   + E + + F   T +LL++TT+IE GIDV +A+ III+ 
Sbjct: 829 QKLVPEL--SICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDR 886

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
           A+ +G++QL+QLRGRVGR ++ +   LLY+    LS  +  RL V+ +  D   GF +A 
Sbjct: 887 ADMYGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVAL 946

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           +D++ R  G +LG +QSG         +L+  LLE A +  +H
Sbjct: 947 KDMEIRGVGNLLGKEQSG--DIYSVGFDLYVQLLEEAIERLQH 987


>gi|254819273|ref|ZP_05224274.1| hypothetical protein MintA_05066 [Mycobacterium intracellulare ATCC
            13950]
          Length = 1200

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 232/472 (49%), Gaps = 17/472 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +AG++  L  ++Q     G     +     ++     ++ T  Q 
Sbjct: 577  DWANTKTKARRAVREIAGELVSLYAKRQA--SPGHAFGPDTPWQAEMEDAFGYTETVDQL 634

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 635  TAITEVKGDMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 694

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +          + V+ ++     A  +  +E +A G   ++IGTH L Q  +++  L LV
Sbjct: 695  QTFTDRMTGFPVTVKGLSRFTDPAESKAVIEGLADGSVDVVIGTHRLLQTGVRWKDLGLV 754

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 755  VVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 814

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   L+  L    + +++  ++             +   L     + +
Sbjct: 815  LTYVGPHDD-KQVAAALRRELLRDGQVFYVHNRVSSID-----RTAAKIRELVPE--ARV 866

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 867  VVAHGQMPEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 926

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 927  LRGRVGRSRERGYAYFLYPPHAPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNV 986

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG++QSG         +L+  L+  A +  +         T+   + +RI L
Sbjct: 987  LGVEQSGH--VAGVGFDLYVRLVGEAVEAYRAAADGHTVTTAEEPKDVRIDL 1036


>gi|261880194|ref|ZP_06006621.1| transcription-repair coupling factor [Prevotella bergensis DSM 17361]
 gi|270333168|gb|EFA43954.1| transcription-repair coupling factor [Prevotella bergensis DSM 17361]
          Length = 1210

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 134/451 (29%), Positives = 229/451 (50%), Gaps = 19/451 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     +     + +A  +  L  +++ +   G   + +  + Q++  +  +  T  Q  
Sbjct: 598  WDRMKEKAKKRIKDIARDLIRLYAKRRKE--KGYAFSPDSFMQQELEASFLYEDTPDQLK 655

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            A +D+  DM +   M R++ GDVG GKT VA+ A   A     Q  ++ P  +LA QH++
Sbjct: 656  ATQDVKADMERARPMDRLVCGDVGFGKTEVAVRAAFKAACDSKQVAVLVPTTVLAFQHFQ 715

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +   ++  + V+ ++        R+ LE +  G+  IIIGTH L   +++++ L L+I
Sbjct: 716  TFRDRLRDFPVRVDYLSRARSAGQTRQVLEDLESGKIDIIIGTHKLLGKNVKWHDLGLLI 775

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+H+FGV  + KL +  T    + M+ATPIPRTL  + +G  D+S +   P  R PI 
Sbjct: 776  IDEEHKFGVSTKEKLRKLKTNVDTITMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIH 835

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T +      + + + +   +S   + +++  +I         ++ E  N + +H     +
Sbjct: 836  TELSTFGH-EVITDAINFEMSRNGQVFFVNNRIS--------NLPEIANLIQKHIPDCRV 886

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            AI HG+MS  + E V+  F N    +L++TT++E GID+ +A+ III  A  FGL+ LHQ
Sbjct: 887  AIGHGKMSPEELEKVVMGFINYDYDVLLSTTIVENGIDIPNANTIIINGAHRFGLSDLHQ 946

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEI 633
            +RGRVGR    + C LL  P   L+  +  RL  L+       GF +A +DL  R  G +
Sbjct: 947  MRGRVGRSNRKAFCYLLAPPKSVLTPEARRRLEALEAFSELGSGFNLAMQDLDIRGAGNL 1006

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            LG +QSG  + L    E +  +L  A  + +
Sbjct: 1007 LGAEQSGFMEDL--GYETYQKILTQAVTELR 1035


>gi|238927163|ref|ZP_04658923.1| transcription-repair coupling factor [Selenomonas flueggei ATCC
           43531]
 gi|238884945|gb|EEQ48583.1| transcription-repair coupling factor [Selenomonas flueggei ATCC
           43531]
          Length = 1097

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 143/451 (31%), Positives = 227/451 (50%), Gaps = 18/451 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
             +W     +     E +A  +  L   ++     G     +    ++     P+  T  
Sbjct: 498 SADWARARAKAQKSVEDIADHLLELYAARRLA--KGHAFAPDDAGQREFEEAFPYQETDD 555

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  AI +I  DM  +  M R+L GDVG GKT VA+ A   A   G Q  ++ P  +LAQQ
Sbjct: 556 QLRAIAEIKNDMESEKPMDRLLCGDVGFGKTEVAIRAAYKAAMDGYQVAVLVPTTVLAQQ 615

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ-DSIQYYKL 395
           HY+       +    V+++        + + L  +A G+  I+IGTHA+     ++++KL
Sbjct: 616 HYQTFAARFADFAPKVDVVCRFRTLREQAETLRDVARGRVDILIGTHAILNRKRVRFHKL 675

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L+IVDE+ RFGV Q+ ++ + A    VL ++ATPIPRTL ++  G  D+S I   PA R
Sbjct: 676 GLLIVDEEQRFGVTQKERIKEFAAGVDVLTLSATPIPRTLHMSLAGARDMSVIETPPAER 735

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            P+++ ++  +    +   ++  LS G + Y+I  ++E            R + L     
Sbjct: 736 LPVQSYVVESSD-AVMRGAIERELSRGGQIYFIYNRVESIDRM-------REHLLQLVPQ 787

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + IA  HG+MS+   E VM  F  G   +L+AT++IE GIDV +A+ III +A+ FGL+Q
Sbjct: 788 ARIASAHGQMSEDILEQVMMDFYEGHYDILLATSIIENGIDVANANTIIIYDADRFGLSQ 847

Query: 576 LHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKE 630
           L+Q+RGRVGR  +++     Y     LS+ +  RL  ++       GF IA  DL+ R  
Sbjct: 848 LYQMRGRVGRSAKMAFAYFTYRRDKVLSEMAEKRLQAMREFARLGSGFKIAMRDLEIRGA 907

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           G +LG +Q G         E++  LLE   +
Sbjct: 908 GSLLGAQQHGHI--AGVGFEMYVKLLEETVE 936


>gi|255037444|ref|YP_003088065.1| transcription-repair coupling factor [Dyadobacter fermentans DSM
           18053]
 gi|254950200|gb|ACT94900.1| transcription-repair coupling factor [Dyadobacter fermentans DSM
           18053]
          Length = 1115

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 131/451 (29%), Positives = 224/451 (49%), Gaps = 17/451 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW +   +     + +A ++  L  ++  ++  G P + +  +  ++  +  +  T  Q 
Sbjct: 509 EWEAKKSKVKKQLKDIAHELIALYAKR--RQAPGFPFSKDNYLQVELESSFIYEDTPDQA 566

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +A  ++  DM + + M R++ GDVG GKT +A+ A   AV    Q  ++ P  ILA QHY
Sbjct: 567 TATANVKDDMEKGHPMDRLVCGDVGFGKTEIAIRAAFKAVCDSKQVAVLVPTTILAMQHY 626

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +   +   +    V  I         ++ L+    G+  I+IGTH +    +++  L L+
Sbjct: 627 KTFSERLADFPARVGYINRFKSAKEIKQTLKEAEEGKIDILIGTHRILNKDVKFKDLGLL 686

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ +FGV+ + +L +      VL +TATPIPRTL  + +G  D+S I   P  R+P+
Sbjct: 687 VVDEEQKFGVKAKDRLKEMRVNVDVLTLTATPIPRTLHFSLMGARDLSVIATPPPNRQPV 746

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            T +   +  + + + +   +  G + +++  ++ + +             L       I
Sbjct: 747 TTEVHTFSE-EFIRDAISFEVQRGGQVFFVHNRVNDIESIANII-------LRLVPDVRI 798

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+M     E VM +F  G   +L++T +IE GID+ +A+ III +A  FGL+ LHQ
Sbjct: 799 GVAHGQMEGDKLEKVMMNFIEGEYDILVSTNIIESGIDIANANTIIINSAHMFGLSDLHQ 858

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           +RGRVGR    + C LL      L+ +S  RL  L+      DGF +A  DL  R  G +
Sbjct: 859 MRGRVGRSNRKAFCYLLTPSASTLASDSRKRLQTLEEFSDLGDGFKVAMRDLDIRGAGNL 918

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG +QSG    L    EL+  +L+ A  + K
Sbjct: 919 LGAEQSGFVNDL--GYELYHKMLDEAVHELK 947


>gi|288802661|ref|ZP_06408099.1| transcription-repair coupling factor [Prevotella melaninogenica
           D18]
 gi|288334811|gb|EFC73248.1| transcription-repair coupling factor [Prevotella melaninogenica
           D18]
          Length = 1118

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 159/627 (25%), Positives = 286/627 (45%), Gaps = 43/627 (6%)

Query: 60  KISEIS-EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKT---EMLKN 115
            ++E+S E +  T+         F    R  ++  ++     + + FF          K 
Sbjct: 358 SVAELSGEGQDATV-----GALPFTPVNRTLHEGFVD---STLKVCFFTDHQIFDRFHKY 409

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHP-HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKI 174
                +     GK+      +  + P  ++ H   D        +  +P G S     ++
Sbjct: 410 NLKSDKARQ--GKMALTMKELQEMEPGDFLVHV--DFGIGKFAGLVRVPAGDSYQEMIRL 465

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           + +    + V    + K  + K       E               W           + +
Sbjct: 466 VYQHNDIVDVSIHSLYK--ISKYRRGDSGE----PPRLSVLGSGAWDRLKERAKKRIKDI 519

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           A  +  L  +++ +   G   + +  +  ++  +  +  T  Q  A +++ QDM     M
Sbjct: 520 ARDLIKLYAKRRRE--KGFAFSPDSFMQHELEASFLYEDTPDQLKATQELKQDMESARPM 577

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VA+ A   A     Q  ++ P  +LA QHY+  KK  ++  + V+ 
Sbjct: 578 DRLVCGDVGFGKTEVAIRAAFKAAVDNKQVAVLVPTTVLAFQHYQTFKKRLKDMPVRVDY 637

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           ++        ++ LE +A G+  I++GTH L   S++++ L L+I+DE+ +FGV  + KL
Sbjct: 638 LSRARSAKQTKQVLEDLAEGKIDILVGTHKLIGKSVKWHDLGLLIIDEEQKFGVSTKEKL 697

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            Q  T    L M+ATPIPRTL  + +G  D+S +   P  R PI+T I   +  + + + 
Sbjct: 698 RQLKTNVDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIASFSH-EVIADA 756

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +   +S   + Y++  +I         ++ E  N + ++     IAI HG+M   + E +
Sbjct: 757 INFEMSRNGQVYFVNDRIS--------NLPEIANLIKKYVPDCRIAIGHGQMKPEELEEI 808

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F N    +L++TT++E GID+ +A+ III +A  FGL+ LHQ+RGRVGR  + + C 
Sbjct: 809 VMGFMNYDYDVLLSTTIVENGIDISNANTIIINDAHRFGLSDLHQMRGRVGRSNKKAFCY 868

Query: 594 LLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFL--- 645
           LL  P   L+  +  RL  L+   D   GF +A +DL  R  G +LG +QSG  + L   
Sbjct: 869 LLAPPLAALNPEARRRLEALETFSDLGSGFNLAMQDLDIRGAGNLLGSEQSGFMEDLGYE 928

Query: 646 IAQPELHDSLLEIARKDAKHILTQDPD 672
             Q  L+ +++E+   + + +  ++ D
Sbjct: 929 TYQKILNQAVMELKNDEFQDLYEEEMD 955


>gi|330836643|ref|YP_004411284.1| transcription-repair coupling factor [Spirochaeta coccoides DSM
           17374]
 gi|329748546|gb|AEC01902.1| transcription-repair coupling factor [Spirochaeta coccoides DSM
           17374]
          Length = 1092

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 140/459 (30%), Positives = 237/459 (51%), Gaps = 22/459 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E LA ++  L  R+  K   G P   +     +   + P+  T+ Q +
Sbjct: 502 WEHKKARARKSAEQLATRLQQLYARR--KNARGFPFPPDTDWQLQFEASFPYDETEDQLT 559

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            I+DI +DM     M R++ GDVG GKT +A  A   AV +G Q V +AP  ILA+QHY 
Sbjct: 560 CIEDIKKDMESPIVMDRLVCGDVGYGKTEIAFRAAFKAVMSGKQVVFLAPTTILAEQHYN 619

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  +  + V +++  +P+  + K L+ +  GQ  I+ GTH + Q  +++  L L++
Sbjct: 620 TFIGRLGDFPVRVGLLSRMVPRKEQSKVLKNLQAGQLDILFGTHRVIQKDVKFSDLGLLV 679

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ RFGV+ + ++ +  T+   L ++ATPIPRTL ++ L   D+S +T  P  R+PI+
Sbjct: 680 VDEEQRFGVKDKERIKEMRTSVDSLSLSATPIPRTLYMSLLRIRDMSLLTTPPIARRPIR 739

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T+I   +  D   + ++  L  G + +++  +IE              N L E     +I
Sbjct: 740 TIIQQYD-PDIAEKAIRNELGRGGQVFYLHNRIETLGM--------VVNKLRERMPEFAI 790

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              HG+M+  D E  M  F +   ++L++TT+IE GID+ + + III+ A+ +G++QL+Q
Sbjct: 791 ESAHGQMNGDDLEDTMRRFIHEGIQVLVSTTIIENGIDIPNVNTIIIDRADMYGVSQLYQ 850

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGR +  +   L Y     LS+ +  RL  +    +   GF +A +D++ R  G +
Sbjct: 851 LRGRVGRSDREACAYLFYPQEEMLSEIAIRRLQTISQHTELGGGFKVAMKDMEIRGTGNL 910

Query: 634 LGIKQSGM---PKFLIAQPELHDSL--LEIARKDAKHIL 667
           LG +QSG        +    L +++  ++ A  D+   +
Sbjct: 911 LGREQSGQVASVGLDMFLKILDETISKMQNADDDSSREV 949


>gi|255521927|ref|ZP_05389164.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J1-175]
          Length = 431

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 146/440 (33%), Positives = 231/440 (52%), Gaps = 20/440 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P +  +G+G++ +  L ++        +   DLL+  P  + D   R  +SE++ E  +T
Sbjct: 8   PTTEIKGIGEETAKTLKEL------GLSTVHDLLWNFPYRYEDYRLR-DLSEVAHEERIT 60

Query: 72  ITGYISQHSSFQLQKRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           I G +   ++     R+  K+   ++     I + FF +    LK+    G  +T++GK 
Sbjct: 61  IQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQ--PYLKSKISVGETVTISGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEW 188
            K + ++           S++     +E VY L   L     +K    A       + E 
Sbjct: 119 DKSRAQVTASKIKIGAVESEEE----LEGVYRLKGTLRNKTMQKYTRLAFDSYSQDIEEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK-QF 247
           I  +LL+K       EA  I+H P+  ++      AR R+ Y+E L  Q+ +   RK + 
Sbjct: 175 IPSNLLEKYQLMDRLEAVRILHFPKNNEEL---KQARRRMVYEEFLLFQLKMQFFRKIER 231

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +K  GI IN + +  +  + ++PF  TK+Q+  + +I  DM     M R+LQGDVGSGKT
Sbjct: 232 EKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHFHMNRLLQGDVGSGKT 291

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +VA IAM AA ++G Q+ +M P  ILA+QH   + +  Q   I V ++T ++    RR+ 
Sbjct: 292 VVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDITVGLLTSSVKGKQRREL 351

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L  + +G   ++IGTHAL QD + Y++L LVI DEQHRFGV QR  L +K   P VL MT
Sbjct: 352 LAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGVAQRRVLREKGEYPDVLFMT 411

Query: 428 ATPIPRTLVLTSLGDIDISK 447
           ATPIPRTL +T+ G++D+S 
Sbjct: 412 ATPIPRTLAITAFGEMDVSI 431


>gi|291059734|gb|ADD72469.1| transcription-repair coupling factor [Treponema pallidum subsp.
            pallidum str. Chicago]
          Length = 1155

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 145/463 (31%), Positives = 235/463 (50%), Gaps = 17/463 (3%)

Query: 208  IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
               +        W +         E +A ++  L      K   G     + +       
Sbjct: 552  NKPHLDSLGSKSWETRKARVKKSVENIAQKLVELY--SLRKTTRGHAFPKDDEWQYAFEA 609

Query: 268  NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
              P+  T  Q   I+++ QDM +   M R++ GDVG GKT +A+ A   AV  G Q V +
Sbjct: 610  AFPYEETDDQRICIEEVKQDMQEAVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQVVFL 669

Query: 328  APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
             P  +L +QH+  I    ++  + +E ++  +P++ ++  L ++AHG   +I+GTH L Q
Sbjct: 670  TPTTLLVEQHFRTICNRFKHFPVRIEKLSRFVPKSEQKDILAKLAHGDIDLIVGTHRLIQ 729

Query: 388  DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
              + +  L L+I+DE+ RFGVQ + KL Q  T    L ++ATPIPRTL +  L   D+S 
Sbjct: 730  KDVSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHMGMLKIRDMSL 789

Query: 448  ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
            +T  P GR PI+TVI   +  + V   ++  L    + +++  +IE  +           
Sbjct: 790  LTTPPEGRLPIETVIQQFD-PNLVATAIRKELDREGQIFYLHNRIENLESVKC-----ML 843

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              L      SI + H  M   + E + + F   T +LL++TT+IE GIDV +A+ III+ 
Sbjct: 844  QKLVPEL--SICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDR 901

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAE 622
            A+ +G++QL+QLRGRVGR ++ +   LLY+    LS  +  RL V+ +  D   GF +A 
Sbjct: 902  ADMYGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVAL 961

Query: 623  EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            +D++ R  G +LG +QSG         +L+  LLE A +  +H
Sbjct: 962  KDMEIRGVGNLLGKEQSG--DIYSVGFDLYVQLLEEAIERLQH 1002


>gi|170017776|ref|YP_001728695.1| transcription-repair coupling factor [Leuconostoc citreum KM20]
 gi|169804633|gb|ACA83251.1| Transcription-repair coupling factor [Leuconostoc citreum KM20]
          Length = 1178

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 146/477 (30%), Positives = 243/477 (50%), Gaps = 22/477 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A  +  L    Q +   G     +     +      +  T  Q 
Sbjct: 568  EWAKTKRQVAAKIEDIADDLLDLYA--QREALSGYAFPPDDTAQLQFDTTFGYPETPDQI 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I  DM ++  M R+L GDVG GKT VAL A+  A  AG Q   +AP  IL QQHY
Sbjct: 626  RSIEEIKADMQKERPMDRLLVGDVGFGKTEVALRAVFKAAHAGKQVAFLAPTTILVQQHY 685

Query: 339  EF-IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E  + +++  + I + +++     A  +K ++ +   +  +++GTH L    + +  L L
Sbjct: 686  ETMLARFSDFSDIRIGVLSRFQTPAQNKKVIKELEAHELDVVVGTHRLLSQDVNFADLGL 745

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +I+DE+ RFGV+ + +L Q      VL +TATPIPRTL +  +G  D+S I   PA R P
Sbjct: 746  LIIDEEQRFGVKHKERLKQLRNNVDVLTLTATPIPRTLNMAMVGARDLSVIETPPANRYP 805

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-- 515
            I+T ++  +    V   ++  L+   + +++  ++ +          +R  S  E     
Sbjct: 806  IQTYVLEADWT-IVRNAIEKELARDGQVFYLHNRVADL---------DRVASQIEDLVPS 855

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + +A IHG+MS+   ESV+  F NG   +L+ TT+IE G+D+ +A+ +I+ENA+H GL+Q
Sbjct: 856  ARVASIHGQMSETQLESVLYDFLNGNYDVLVTTTIIETGVDIPNANTLIVENADHMGLSQ 915

Query: 576  LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
            L+QLRGRVGR   ++     Y      S+ +  RL  +++      GF IA  DL  R  
Sbjct: 916  LYQLRGRVGRSTRLAYAYFTYPFTRTPSEEAEKRLEAIRDFTELGSGFRIAMRDLSIRGA 975

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            G++LG +Q G    +     ++  +L+ A    +  +TQ+    +     + +L YL
Sbjct: 976  GDLLGKQQHGFIDSVGYD--MYTQMLKDAVAKKQGKVTQNQQPETDTELILGVLAYL 1030


>gi|46198841|ref|YP_004508.1| transcription-repair coupling factor [Thermus thermophilus HB27]
 gi|46196464|gb|AAS80881.1| transcription-repair coupling factor [Thermus thermophilus HB27]
          Length = 978

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 152/484 (31%), Positives = 246/484 (50%), Gaps = 18/484 (3%)

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            L  +  P +        +P +       EW     +     E LAG++ +L  ++  K 
Sbjct: 362 YLPVEQLPLLKRHPGTTDDPPELSSLGKNEWQRAKEKARKDVEELAGRLLVLQAKR--KA 419

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
             G       +    + +  P+  T  Q+ A++++L+D+   + M R++ GDVG GKT V
Sbjct: 420 TPGRAFPPLPEWDPLVEKGFPYELTPDQKRALEEVLRDLESPHPMDRLVSGDVGFGKTEV 479

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           AL A    V  G Q   + P  +LA+QH +  ++  Q   + V +++   P       L+
Sbjct: 480 ALRAAHRVVGHGAQVAFLVPTTLLAEQHGKTFRERFQGLPVRVAVLSRFTPPKEEEAILK 539

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +A G   I+IGTH L Q+ +++  L L+IVDE+HRFGV Q+ ++ +       L ++AT
Sbjct: 540 GLAEGTVDIVIGTHRLLQEDVRFRDLGLLIVDEEHRFGVAQKERIRELKAEVDTLYLSAT 599

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL    +G  D+S I   P GRKPIKT + P + +  V E +   L  G K +++ 
Sbjct: 600 PIPRTLYSALVGLKDLSSIQTPPPGRKPIKTFLAPFDPL-LVREAILFELERGGKVFYVH 658

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            ++   +            SL     + I ++HG+M +   E  M  F  G   +L+ATT
Sbjct: 659 DRVASIEARRRF-----LESLVPE--ARIGVVHGQMPESLIEETMLLFAEGAYDVLLATT 711

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +IE G+DV +A+ I+IE A+  GLA L+QLRGRVGR EE +   L + P L++ +  RL+
Sbjct: 712 IIEAGLDVPEANTILIERADRLGLATLYQLRGRVGRREEEAYAYLFHPPRLTEAAEKRLA 771

Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            + +  D   G L+AE D++ R  G +LG +Q G         E++  LLE A +  K  
Sbjct: 772 AIADLSDLGSGHLLAERDMEIRGVGNLLGPEQHGHI--RALSLEVYTELLEEAIRKLKGE 829

Query: 667 LTQD 670
           + ++
Sbjct: 830 VKEE 833


>gi|111022724|ref|YP_705696.1| transcription repair coupling factor [Rhodococcus jostii RHA1]
 gi|110822254|gb|ABG97538.1| transcription repair coupling factor [Rhodococcus jostii RHA1]
          Length = 1215

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 136/472 (28%), Positives = 230/472 (48%), Gaps = 17/472 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +AG++  L   +Q     G     +    +++     F+ T  Q 
Sbjct: 601  DWANTKRKARKAVREIAGELVQLYAARQAA--PGHAFGPDTPWQKEMEDAFAFTETHDQL 658

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 659  TVISEVKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHL 718

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        ++ +  +A G+  +++GTH L Q  I++  L LV
Sbjct: 719  QTFTERMAAFPVTVRGLSRFTDAGDSKETIAGMADGEIDVVVGTHRLLQTGIRWKDLGLV 778

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 779  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPI 838

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L    + +++  ++            +R   L     + +
Sbjct: 839  LTYVGAYAD-KQVAAAIRRELLRDGQVFYVHNRVSSID-----KSAQRIRELVPE--ARV 890

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++   E  +  F      +L+ TT+IE G+D+ +A+ +I+E A+  GL+QLHQ
Sbjct: 891  VVAHGQMNEDTLERTVQGFWERDYDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQ 950

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    D   G  +A +DL+ R  G +
Sbjct: 951  LRGRVGRSRERGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNV 1010

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG +QSG         +L+  L+  A +  +      P  T    + +RI L
Sbjct: 1011 LGAEQSGH--VAGVGFDLYVRLVGEAVEAFRAAADGRPITTEDAPKEVRIDL 1060


>gi|300087739|ref|YP_003758261.1| transcription-repair coupling factor [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527472|gb|ADJ25940.1| transcription-repair coupling factor [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 1148

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 143/464 (30%), Positives = 222/464 (47%), Gaps = 17/464 (3%)

Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
            NP+            +R A +         L +       +G   + +    +++  + 
Sbjct: 541 KNPKLNTLGSEDWNRAKRTAENAADEIAEEFLQLYAARHAAVGFQYSEDTIWQRELEDSF 600

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q  AI +I +DM Q   M R++ GDVG GKT VAL A   AV    Q  I+ P
Sbjct: 601 PYTETSDQLQAIDEIKKDMEQPQPMDRLVLGDVGYGKTEVALRAAFKAVMDNRQVAILVP 660

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LAQQHY           I ++ ++       +   +ER+A G   IIIGTH L Q  
Sbjct: 661 TTVLAQQHYSTFSHRLAAFPITIDSLSRFRTDTEQSSIIERLASGSIDIIIGTHRLLQGD 720

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L LVI+DE+ RFGV  +    +      +L ++ATPIPRTL L+  G  DIS I 
Sbjct: 721 VKFKHLGLVIIDEEQRFGVLHKDYFKKLRKEIDILTLSATPIPRTLELSLSGIKDISIID 780

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R P+KTV+   +    + + +   +    + +++  +I +             N 
Sbjct: 781 TPPQERHPVKTVVSSFDEY-LIKDAIISEMERNGQIFFVHNRIVDI--------FRIANQ 831

Query: 510 LHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L      +SI + HG+MS+ + E VM SF +G   +L+ TT+IE G+D+ +A+ III +A
Sbjct: 832 LRNIVPEASIQVAHGQMSERELEQVMSSFVDGDIDVLVCTTIIESGVDIPNANTIIINDA 891

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP-----LSKNSYTRLSVLKNTEDGFLIAEE 623
           +  GL QL+QLRGRVGR  + +   LLY         S      +    +   G+ IA +
Sbjct: 892 DKLGLTQLYQLRGRVGRSTQSAFAYLLYDKNREFKGNSAQRLQTIYEAASLGSGYTIALK 951

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           DL+ R  G +LG KQSG          L+  LL+ A    + ++
Sbjct: 952 DLEIRGAGTLLGSKQSGQIS--AVGFHLYSELLKEAIAAKQKLI 993


>gi|262201520|ref|YP_003272728.1| transcription-repair coupling factor [Gordonia bronchialis DSM 43247]
 gi|262084867|gb|ACY20835.1| transcription-repair coupling factor [Gordonia bronchialis DSM 43247]
          Length = 1195

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 139/472 (29%), Positives = 236/472 (50%), Gaps = 18/472 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +AG++  L   +      G     +    Q++     F+ T  Q 
Sbjct: 588  DWQNTKRKARKAVREIAGELVQLYAARHAA--PGHAFGPDTPWQQEMEDAFDFTETVDQM 645

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  ILAQQH 
Sbjct: 646  TVIGEVKADMERPVPMDRVIVGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTILAQQHL 705

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        R+ ++ +A G+  I+IGTH L Q  + +  L LV
Sbjct: 706  QTFSERMSGFPVRVRGLSRFTDARESREIIDAMATGEVDIVIGTHRLLQTGVTWKDLGLV 765

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 766  IVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPV 825

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L    + +++  ++        ++  +    + E   + +
Sbjct: 826  LTYVGAYA-PKQVAAAIRRELLRDGQVFYVHNRVSTID----KTARDIAAMVPE---ARV 877

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++   E  +  F N    +L+ TT+IE G+D+ +A+ +I++ AE+ GL+QLHQ
Sbjct: 878  VVAHGQMNEDQLEKTVSGFWNREFDVLVCTTIIETGLDISNANTLIVDRAENLGLSQLHQ 937

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E     LLY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 938  LRGRVGRSRERGYAYLLYSPERPLTETAYDRLATIAQNNELGAGMAVALKDLELRGAGNV 997

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG +QSG         +L+  L+  A +  +      P +TS   + +RI L
Sbjct: 998  LGAEQSGH--VAGVGFDLYVRLVGEAVEAYRAAADGQP-VTSRETEEVRIDL 1046


>gi|261856564|ref|YP_003263847.1| transcription-repair coupling factor [Halothiobacillus neapolitanus
            c2]
 gi|261837033|gb|ACX96800.1| transcription-repair coupling factor [Halothiobacillus neapolitanus
            c2]
          Length = 1159

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 144/463 (31%), Positives = 232/463 (50%), Gaps = 19/463 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    +        +A ++  +  R+  K+    P     +   +   N  F  T  Q+
Sbjct: 558  QWEKARKRAAEQVRDVAAELLDIHARRAAKRGQAQP--TPEEEYARFANNFAFETTPDQQ 615

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  +L DM++   M R++ GDVG GKT VA+ A   AV  G Q  ++ P  +LA+QH 
Sbjct: 616  LAIDSVLADMARTQPMDRVVCGDVGFGKTEVAMRAAFVAVMNGKQVAVLVPTTLLAEQHL 675

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +       I +E ++         + L  +A G+  ++IGTH L  D + + +L LV
Sbjct: 676  RNFRDRFAGWPINIEGLSRMSNAKKTTEVLASVASGKVDVVIGTHKLLSDHLDFKELGLV 735

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L +      +L +TATPIPRTL +   G  D+S I   P  R  +
Sbjct: 736  IIDEEQRFGVRHKEQLKRLRAEVDLLTLTATPIPRTLNMALSGIRDLSIIATPPRERLSV 795

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            KT+++  +   ++ E ++  L  G + Y++  ++   +      + ++   L     + I
Sbjct: 796  KTLLLRWDD-AQIREAVQRELKRGGQVYFLHNEVRSIE-----RMAKQLADLIPE--ARI 847

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG++S+   E +M  F +    +L++TT+IE GIDV  A+ I+I  A+ FGLAQLHQ
Sbjct: 848  AVAHGQLSERGLEQIMADFYHQRFNVLLSTTIIESGIDVPTANTILINRADKFGLAQLHQ 907

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L+   P  ++ ++  RL  L   E+   GF +A  DL+ R  GE+
Sbjct: 908  LRGRVGRSHHRAYAYLITPEPAQMTPDAVKRLDALAALEELGVGFTLATHDLEIRGAGEL 967

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
            LG  QSG          L+  LL+ A K  K    + PDL   
Sbjct: 968  LGDGQSGQMH--EVGYTLYMDLLDRAVKALKS--GKQPDLAGP 1006


>gi|78189837|ref|YP_380175.1| transcription-repair coupling factor [Chlorobium chlorochromatii
           CaD3]
 gi|78172036|gb|ABB29132.1| Transcription-repair coupling factor [Chlorobium chlorochromatii
           CaD3]
          Length = 1099

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 143/500 (28%), Positives = 246/500 (49%), Gaps = 18/500 (3%)

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
              S   A      P  +K       A++     ++    I L+ +  Q K + G     
Sbjct: 449 HLLSKYTASENSS-PTLSKLGSSKWAAKKEKVRKKIRDIAINLIKVYAQRKMQPGFAFAP 507

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +    ++      F  T  Q  AI D+ +DM   + M R++ GD G GKT +A+ +   A
Sbjct: 508 DSIFMREFEAAFIFDETPDQLRAINDVKKDMQASHPMDRLICGDAGFGKTEIAMRSAFKA 567

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           VE+  QA ++ P  ILA QH +   +   N  I + +++  + +  +   L++I  G+  
Sbjct: 568 VESKKQAAVLTPTTILAHQHADSFTRRFANFPISIAVLSRFVSRKEQLSLLKKIEEGKID 627

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I+IGTH L    + +  L L+++DE+  FGV+ + KL ++      L M+ATPIPRTL  
Sbjct: 628 IVIGTHRLVSKDVHFKDLGLLVIDEEQHFGVEVKEKLREQFPTIDTLTMSATPIPRTLQF 687

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           + LG  D+S ++  P  R+P++T+I   +    +   ++  L    + +++  +I     
Sbjct: 688 SMLGARDLSIVSTPPKNRQPVETIITDFD-AALIQSAIQRELQREGQVFFLHNRI----- 741

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +   ++ E    L    ++ I   HG+M   + E +M  F      +LI+TT+I  G+D+
Sbjct: 742 AGLETIAESLRELVP--SARIVYAHGQMPTRELEKIMMDFMQQEVDVLISTTIIGSGLDI 799

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK--- 612
            +A+ III  A+ FGL+ L+QLRGRVGR E  + C L+  P   L K++  RL+V++   
Sbjct: 800 SNANTIIINRADLFGLSDLYQLRGRVGRSERKAYCYLITPPMKTLKKDALQRLAVIESFT 859

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQ 669
               GF IA  DL  R  G +LG +QSG      F + Q  L +++ E+   +  H+  +
Sbjct: 860 ELGSGFNIALRDLDIRGAGNLLGAEQSGYIHELGFDLYQKMLEETVAELKTNEFSHMFEE 919

Query: 670 DPDLTSVRGQSIRILLYLYQ 689
           + +   +R Q    LL+ + 
Sbjct: 920 EGN-KPLRQQKPCDLLFFFD 938


>gi|167011026|ref|ZP_02275957.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 847

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 143/417 (34%), Positives = 217/417 (52%), Gaps = 13/417 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  + +   G   ++  +   +   + P+  T  Q SAI D+ +DM     M R++ G
Sbjct: 272 LEIYAKREMRQGFSNSLNEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICG 331

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT + + A   A +   Q  I+ P  ILAQQHY   K    NT I +E+IT +  
Sbjct: 332 DVGFGKTEITMRAAFLATQNQKQVAILVPTTILAQQHYNSFKDRFTNTAINIEVITRSKT 391

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++  E +  G   IIIGTH L    I +  L L+I+DE+HRFGV Q+ KL      
Sbjct: 392 SKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNLGLLIIDEEHRFGVAQKEKLKSLKAE 451

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L M+ATPIPR+L +      D+S I   PA R  +KT +   +  + + E +     
Sbjct: 452 IDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDN-NIIREAVSRETI 510

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  ++E  ++       E    L       IAI HG+MS+ + + VM  FK+ 
Sbjct: 511 RGGQIFYLYNKVETIQKKK-----EILQELFPRL--RIAIAHGQMSEKEIQKVMFDFKHN 563

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
              +L+ TT+IE GID+ +A+ +IIE+A + GLAQLHQLRGRVGR    +   +L     
Sbjct: 564 KYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVGRSHHQAYAYMLIPNKA 623

Query: 600 -LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            ++K++  RL  + NTE    GF +A  DL+ R  GEILG +QSG    +     + 
Sbjct: 624 SITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSGNIDGIGLNLYMD 680


>gi|240169894|ref|ZP_04748553.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
            kansasii ATCC 12478]
          Length = 1238

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 138/474 (29%), Positives = 238/474 (50%), Gaps = 21/474 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +AG++  L  ++Q     G     +     ++     F+ T  Q 
Sbjct: 607  DWANTKTKARRAVREIAGELVSLYAKRQA--SSGHAFAPDTPWQAEMEDAFGFTETVDQL 664

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 665  TAIQEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 724

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V+ ++     A  R  ++ +A G   I+IGTH L Q  +++  L LV
Sbjct: 725  QTFAQRMSGFPVTVKGLSRFTDAAESRTVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLV 784

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 785  VVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 844

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TS 516
             T + P +   +V   L+  L    +A+++  ++         S ++R  +        +
Sbjct: 845  LTYVGPHDD-KQVAAALRRELLRDGQAFYVHNRV---------SSIDRAAAHVRELVPEA 894

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HG+M +   E  +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QL
Sbjct: 895  RVVVAHGQMPEELLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQL 954

Query: 577  HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G
Sbjct: 955  HQLRGRVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAG 1014

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
             +LG++QSG         +L+  L+  A +  +         T+   + +RI L
Sbjct: 1015 NVLGVEQSGH--VAGVGFDLYVRLVGEAVEAYRAAADGKTVTTAEEPKDLRIDL 1066


>gi|116070624|ref|ZP_01467893.1| Transcription-repair coupling factor [Synechococcus sp. BL107]
 gi|116066029|gb|EAU71786.1| Transcription-repair coupling factor [Synechococcus sp. BL107]
          Length = 1192

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 140/463 (30%), Positives = 233/463 (50%), Gaps = 20/463 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT            +A  +  L   +Q  +  G     +G    ++  + P+ PT  Q  
Sbjct: 571  WTKAKDRAKKAVRKVALDLVKLYAERQ--QSNGFAFPPDGPWQTELEESFPYEPTPDQLK 628

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            +  D+ +DM +   M R++ GDVG GKT VA+ A+  A+ AG Q  ++AP  +LAQQH+ 
Sbjct: 629  STTDVKRDMERAEPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWR 688

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             + +      I V ++        R+  LE +  G    ++GTH L      + +L L++
Sbjct: 689  TLSERFAPYPIKVALLNRFRTTTERKSILEGLKQGTIDAVVGTHQLLSKGTSFQQLGLLV 748

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  ++S IT  P  R+PIK
Sbjct: 749  VDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIK 808

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T +  ++  + V   ++  L  G + +++ P++E  +        +    L        +
Sbjct: 809  THLASLD-PEAVRSAIRQELDRGGQVFYVVPRVEGIE--------DVATGLRAMLPGLKL 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++ + ES M +F  G   +++ TT++E G+D+   + I+IE+A  FGLAQL+Q
Sbjct: 860  LVAHGQMAEGELESAMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFGLAQLYQ 919

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L Y  +  LS N+  RL  ++       G+ +A  D++ R  G +
Sbjct: 920  LRGRVGRSGIQAHAWLFYPGNASLSDNARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNL 979

Query: 634  LGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHILTQDPDL 673
            LG++QSG  + +        L +SL EI  +D   +     DL
Sbjct: 980  LGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPSVDDTQVDL 1022


>gi|160871679|ref|ZP_02061811.1| transcription-repair coupling factor [Rickettsiella grylli]
 gi|159120478|gb|EDP45816.1| transcription-repair coupling factor [Rickettsiella grylli]
          Length = 1149

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 159/496 (32%), Positives = 251/496 (50%), Gaps = 21/496 (4%)

Query: 198  SFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
               S     +    P  +    +W    R+       +A ++     R+      G   +
Sbjct: 534  HLISRYSGNDSEQAPLHQLGSEQWEKAKRKAAEALRDVACELLDSYARRAA--SKGYAFH 591

Query: 257  VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            +  +  Q      PF+ T+ Q  AI+ ++QDM+ +  M R++ GDVG GKT VA+ A   
Sbjct: 592  MPEEDYQAFAAQFPFTETQDQAQAIQQVIQDMTSERAMDRLVCGDVGFGKTEVAMRAAFL 651

Query: 317  AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            AV +  Q  ++ P  +LAQQHY+          + VE+I+     A ++K LER+  G+ 
Sbjct: 652  AVHSNKQVALLVPTTLLAQQHYQNFCDRFAEWPVHVEMISRFRSIASQKKILERLQQGKI 711

Query: 377  HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
             I++GTH L    +++ +L L+I+DE+HRFGVQQ+ +L        +L +TATPIPRTL 
Sbjct: 712  DILVGTHKLLSKELKFPRLGLLIIDEEHRFGVQQKERLKALRAQVDILSLTATPIPRTLN 771

Query: 437  LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            +   G  ++S I   PA R  IKT +   N    + E +   L  G + Y++  Q++  +
Sbjct: 772  MALSGLRELSIIATPPARRLSIKTFVQQRNTR-LIREAILRELFRGGQVYFLHNQVDSIE 830

Query: 497  ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                  V     +L     + I + HG++ +   E VM  F +    +L+ TT+IE GID
Sbjct: 831  -----KVARELEALVPE--ARIQVAHGQLRESQLERVMADFYHQRFNVLLCTTIIESGID 883

Query: 557  VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
            V  A+ III+ A+ FGLAQLHQLRGRVGR    +   L+  PP  ++ ++  RL    + 
Sbjct: 884  VPSANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLMTPPPEMITADAMKRLEAFISL 943

Query: 615  ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            ED   GF +A  DL+ R  GE+LG +QSG  + +     L+  LLE      K    ++P
Sbjct: 944  EDLGAGFSLAMHDLEIRGAGEVLGEQQSGNMQSIGFS--LYMELLEQTVDALKS--GKEP 999

Query: 672  DLTSVRGQSIRILLYL 687
             L S+  Q++ + L +
Sbjct: 1000 SLKSL-NQTLEMDLQV 1014


>gi|197302598|ref|ZP_03167653.1| hypothetical protein RUMLAC_01327 [Ruminococcus lactaris ATCC
           29176]
 gi|197298496|gb|EDY33041.1| hypothetical protein RUMLAC_01327 [Ruminococcus lactaris ATCC
           29176]
          Length = 1117

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 173/642 (26%), Positives = 303/642 (47%), Gaps = 64/642 (9%)

Query: 42  IDLLFYHPSSFIDRHYRPK---ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
            DL       + D         +  +    I+ + G +++   + +      K ++   +
Sbjct: 370 EDL-----RDY-DLSSFYSEDMVRTVRPGEIMVVYGCVAEGYEYPM-----LKFMVISES 418

Query: 99  GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEA 158
                  F ++ +  +   +EG+KI    ++K            Y+ H +  +       
Sbjct: 419 DI-----FGKRKKKRRRKVYEGQKIQEFAELKPG---------DYVVHENHGLG------ 458

Query: 159 VYSLPTGLSVDLF-KKIIVEALSRLPVLPEWIEK---DLLQKKSFPS-IAEAFNIIHNPR 213
           VY     + VD   +  +  + +   +L  +I     DL+QK +         N +  P+
Sbjct: 459 VYQGIEKVEVDKVTRDYMKISYADGGIL--YILATQMDLIQKYAGADAKPPKLNKLGTPQ 516

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                 W     +     +++A  +  L   +Q  +  G   + +    ++     PF  
Sbjct: 517 ------WNKTKSQVKKAVQVIAQDLVELYAVRQ--QTEGFVYSPDTVWQKEFEEMFPFEE 568

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  AI+D  +DM     M R++ GDVG GKT VA+ A   AV+ G Q V + P  IL
Sbjct: 569 TEDQLRAIEDTKKDMESTKVMDRLICGDVGYGKTEVAIRAAFKAVQDGKQVVYLVPTTIL 628

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY    +  ++  + ++++      A ++K +E +  G   I+IGTH +    + Y 
Sbjct: 629 AQQHYNTFIQRLKDFPVRIDLLCRFRTPAQQKKTIEDLKKGLVDIVIGTHRVLSKDVTYK 688

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ +G  D+S + E P 
Sbjct: 689 DLGLLIIDEEQRFGVTHKEKIKKMRENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPM 748

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R PI+T ++  N  + + E ++  LS G + Y++  ++E+  +        R   L   
Sbjct: 749 DRMPIQTYVMEFND-EMIREAIERELSRGGQVYYVYNRVEDIADVAG-----RVQKLVPG 802

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             +S++  HG+MS+ + E +M  F NG   +L++TT+IE G+D+ +A+ +II++A+ FGL
Sbjct: 803 --ASVSFAHGQMSERELEDIMYDFINGEIDVLVSTTIIETGLDIANANTMIIQDADRFGL 860

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           +QL+QLRGRVGR   ++   LLY     L + +  RL+ ++   D   G  IA  DL+ R
Sbjct: 861 SQLYQLRGRVGRSSRMAYAFLLYRRDKLLKEVAEKRLAAIREFTDLGSGIKIAMRDLEIR 920

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
             G +LG  QSG    +     L+  +L  A K+ K    +D
Sbjct: 921 GAGNLLGEAQSGHMAAVGYD--LYCKMLNEAVKELKGEKEED 960


>gi|315442986|ref|YP_004075865.1| transcription-repair coupling factor Mfd [Mycobacterium sp. Spyr1]
 gi|315261289|gb|ADT98030.1| transcription-repair coupling factor Mfd [Mycobacterium sp. Spyr1]
          Length = 1202

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 132/449 (29%), Positives = 223/449 (49%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +A ++  L  ++Q     G   + +     ++     F+ T  Q 
Sbjct: 596  DWANTKTKARRAVREIAAELVTLYAKRQA--SPGHAFSPDTPWQVEMEDAFGFTETVDQL 653

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 654  TAITEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 713

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +          + V+ ++     A  R  +E +  G   I+IGTH L Q  + +  L LV
Sbjct: 714  QTFTNRMTGFPVTVKGLSRFTDPAESRATMEGMKDGSVDIVIGTHRLLQTGVTWKDLGLV 773

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 774  IVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 833

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   ++   L+  +    +A++I  ++         S   +   L     + +
Sbjct: 834  LTYVGQHDD-KQIAAALRREMLRDGQAFYIHNRVRTID-----SAAAKVRQLVPE--ARV 885

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E  ++ F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 886  VVAHGQMPEEQLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 945

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 946  LRGRVGRSRERGYAYFLYPPEVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNV 1005

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +QSG         +L+  L+  A + 
Sbjct: 1006 LGAEQSGH--VAGVGFDLYVRLVGEAVEA 1032


>gi|110598535|ref|ZP_01386804.1| transcription-repair coupling factor [Chlorobium ferrooxidans DSM
           13031]
 gi|110339839|gb|EAT58345.1| transcription-repair coupling factor [Chlorobium ferrooxidans DSM
           13031]
          Length = 1108

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 140/460 (30%), Positives = 232/460 (50%), Gaps = 19/460 (4%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P  +K       A++     +L    I L+ +  Q K + G     +    ++   +  F
Sbjct: 476 PSLSKLGSSKWAAKKEKVRGKLRDTAINLIKIYAQRKMQSGFAFAADSIFMREFEASFIF 535

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q  AI ++ +DM   + M R++ GD G GKT +A+ A   AVE+  Q  ++ P  
Sbjct: 536 EETPDQHRAIVEVKKDMEAPHPMDRLICGDAGFGKTEIAMRAAFKAVESKKQVAVLTPTT 595

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA QH E   +  +N  I + +++  +P+  + + L++I  GQ  I+IGTH L    + 
Sbjct: 596 ILAHQHAESFTRRFENFPIAIAVLSRFVPRKDQIELLKKIKAGQIDIVIGTHRLVSKDVL 655

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+++DE+  FGV+ + KL ++      L M+ATPIPRTL  + LG  D+S ++  
Sbjct: 656 FQDLGLLVIDEEQHFGVEVKEKLREQFPGVDTLTMSATPIPRTLQFSMLGARDLSIVSTP 715

Query: 452 PAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           P  R+P++T+I   +   I   I+     +    + +++  +I   +E            
Sbjct: 716 PKNRQPVETLITDYDTALIQSAIQ---REIRREGQVFFLHNRISGLEEVQL-----TLRE 767

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L    ++ I   HG+M+  + E VM  F      +LI+TT+I  G+D+ +A+ III  A+
Sbjct: 768 LVP--SARIVFAHGQMAPKELEKVMMDFMQKEVDVLISTTIIGSGLDISNANTIIINRAD 825

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEED 624
            FGL+ L+QLRGRVGR +  + C L+  P   L +++  RL+V++       GF IA  D
Sbjct: 826 MFGLSDLYQLRGRVGRSDRKAYCYLITPPLHTLKRDAVQRLAVIESFTELGSGFNIALRD 885

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           L  R  G +LG +QSG    L     L+  +LE    + K
Sbjct: 886 LDIRGAGNLLGAEQSGYIHELGFD--LYQKMLEETVAELK 923


>gi|307711221|ref|ZP_07647643.1| transcription-repair coupling factor [Streptococcus mitis SK321]
 gi|307617183|gb|EFN96361.1| transcription-repair coupling factor [Streptococcus mitis SK321]
          Length = 1167

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 145/452 (32%), Positives = 235/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + + +         P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDEDQHAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  ++++I +DM     M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 614 TDDQLRSVEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTETLEKLKNGQVDILIGTHRILSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N  + + + +   +  G + Y++  +++           ++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-NVIRDAVLREMERGGQVYYLYNKVDTID--------QKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|227504114|ref|ZP_03934163.1| transcription-repair coupling factor [Corynebacterium striatum ATCC
            6940]
 gi|227199290|gb|EEI79338.1| transcription-repair coupling factor [Corynebacterium striatum ATCC
            6940]
          Length = 1220

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 139/492 (28%), Positives = 241/492 (48%), Gaps = 27/492 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q           +     ++  N P+  T+ Q 
Sbjct: 593  DWKNTKKKARAAVREIAGELVELYAKRQASPGHQFA--PDTPWQAEMEDNFPYIETEDQM 650

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  + +DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 651  LAIDAVKEDMESTVPMDRVVVGDVGYGKTEVAVRAAFKAVQDGMQVAVLVPTTLLAQQHA 710

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +  ++      + +++++        ++ +  +A G   I+IGTH L Q  + +  L L+
Sbjct: 711  DTFRERMTGFPVNIQVLSRFTSTKDAKEIVSGLADGSVDIVIGTHRLLQTGVHWKNLGLI 770

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +     +  VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 771  VVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPV 830

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T +       ++   ++  L    + ++I  ++ + +        ++   L E    + 
Sbjct: 831  LTYVGAYED-KQIAAAIRRELLRDGQTFFIHNKVSDIE--------KKARELRELVPEAR 881

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I + HG+M++   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLH
Sbjct: 882  IVVAHGQMNEEALEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLH 941

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G 
Sbjct: 942  QLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGN 1001

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL-TQDPDLTSVRGQSIRILL------ 685
            +LG +QSG         +L+  L+  A +  K +   + P  T    + IRI L      
Sbjct: 1002 VLGAQQSGHI--AGVGFDLYVRLVGEAVETFKALARGEVPKATDDGPKEIRIDLPVDAHI 1059

Query: 686  -YLYQYNEAFQF 696
               Y  +E  + 
Sbjct: 1060 PEDYINSERLRL 1071


>gi|326385186|ref|ZP_08206853.1| transcription-repair coupling factor [Gordonia neofelifaecis NRRL
            B-59395]
 gi|326196090|gb|EGD53297.1| transcription-repair coupling factor [Gordonia neofelifaecis NRRL
            B-59395]
          Length = 1193

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 136/488 (27%), Positives = 240/488 (49%), Gaps = 23/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +AG++  L   +      G   + +    +++     ++ T  Q 
Sbjct: 587  DWANTKRKARKAVREIAGELVRLYAARHAA--PGFAFSADTPWQREMEDAFDYTETVDQM 644

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  ILA QH 
Sbjct: 645  TVIGEVKSDMEKPVPMDRVVVGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTILAGQHL 704

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++     A  ++ + ++A G+  ++IGTH L Q  I++  L LV
Sbjct: 705  QTFTERMDGFPVKVRGLSRFTDPAESKEIIAQMASGEVDVVIGTHRLLQTGIRWKDLGLV 764

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 765  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPV 824

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   ++  L    + +++  ++    ++                 + +
Sbjct: 825  LTYVGAYSD-KQVAASIRRELLRDGQVFYVHNRVSTIDKTAKHIAN-------MVPEARV 876

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E  +  F +    +L+ TT+IE G+D+ +A+ +I++ AE+FGL+QLHQ
Sbjct: 877  VVAHGQMGEEQLERTVQGFWDREYDVLVCTTIIETGLDISNANTLIVDRAENFGLSQLHQ 936

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E     LLY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 937  LRGRVGRSRERGYAYLLYSPDKPLTETAYDRLATIAQNNELGAGMAVALKDLELRGAGNV 996

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLY----- 688
            LG +QSG         +L+  L+  A +  +      P + +     +RI L +      
Sbjct: 997  LGAEQSGH--VAGVGFDLYVRLVGEAVEAYRAAADGKP-VATEENVEVRIDLPVDAHIPV 1053

Query: 689  QYNEAFQF 696
            +Y EA + 
Sbjct: 1054 EYVEADRL 1061


>gi|30350183|gb|AAP31491.1| putative ATP-dependent DNA helicase [Western X phytoplasma]
          Length = 634

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 169/635 (26%), Positives = 302/635 (47%), Gaps = 34/635 (5%)

Query: 37  NETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL----QKRRPYKI 92
           +     +L+FY P  + +      I++  ++ I+ + G I            +KR  ++I
Sbjct: 22  DINTLKELIFYKPKKYQNF-LLSNINQAMDKEIINVIGKIVSEPISSKDDSDKKRLNFQI 80

Query: 93  LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN 152
           L++D    + ++ F +    L N     + + + GK       I      +   N     
Sbjct: 81  LIHDDV-FLDVVLFNKF--YLANFLKINKNVFIKGKYNLYNKSITASLISFDLKNKNK-- 135

Query: 153 FPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV-LPEWIEKDLLQKKSFPSIAEAFNIIHN 211
              I+ VY +   ++       +    ++  + + E +    L+K +     EA   +H 
Sbjct: 136 ---IKPVYGIK-NITDRSITTFLKNIFNKPQLKIKENLSPLFLKKYNLIDRKEALMNLHL 191

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P+  +         +R  ++E     IA  L  ++ K     P+N      + I++ IPF
Sbjct: 192 PKSQQLL---HKTLKRFKHEEA--LNIAQKLFEEKKKLPFKKPLNYGNYYIKTIMQKIPF 246

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
           S T  Q+  +KDI  D+ Q     R++QGDVGSGKT+   +A  A + A  Q ++MAP  
Sbjct: 247 SLTDKQKKIVKDIYSDLKQNYPTKRLIQGDVGSGKTITVFLAAIAVISAKKQVLMMAPTE 306

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+QHY    K     + I         +  ++       + +  ++IGTH     + +
Sbjct: 307 ILAKQHYLNFTKLFPEIKTIFITSKSKKKKTLQKAI----YNNEYQMVIGTH--LLANTE 360

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           ++ L L+I+DE H+FG   + K + +     VL +TATPIP+TL +   G +  S +TE 
Sbjct: 361 FHDLGLIIIDETHKFGTDVKDKTSFQNLQADVLYLTATPIPKTLAVMYFGLLKTSLLTEP 420

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  +K I T   P   I  +++  +    + ++ Y + P I++  +      ++ F  L 
Sbjct: 421 PYAKKSIITERFPFEDIVPLLKENQA---KNEQTYIVVPAIKQNAKKFNIETIKSF--LE 475

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           E     + ++HG+ ++ ++E +M  F      +L+ TT+IEVGID+ +A+ I+I  A+ F
Sbjct: 476 EEKIQHLYVLHGKKNNQEQEDIMAGFVKNPQGILLDTTIIEVGIDIPNATTIVILGADRF 535

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL+QLHQLRGRVGR E+ + C L+   P +     RL++L+   +GF ++E DLK R  G
Sbjct: 536 GLSQLHQLRGRVGRNEKQNYCFLV---PENPTDNQRLNILEQESNGFKLSEFDLKNRGPG 592

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           + +G KQSG  K+          ++   +KD +++
Sbjct: 593 DFVGKKQSGYLKYHFLNVATDFKIISQVQKDFENL 627


>gi|223983659|ref|ZP_03633835.1| hypothetical protein HOLDEFILI_01116 [Holdemania filiformis DSM
            12042]
 gi|223964356|gb|EEF68692.1| hypothetical protein HOLDEFILI_01116 [Holdemania filiformis DSM
            12042]
          Length = 1147

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 144/487 (29%), Positives = 251/487 (51%), Gaps = 23/487 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
              +W    +        +A ++  L    Q ++ IG     +  + Q+   +  +  T  
Sbjct: 549  SHDWEKTKQRLKDNVNEIADRLVKLY--SQREENIGYAYGPDTPLQQEFEDDFDYDLTPD 606

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            Q  A+++I +DM Q   M R+L GDVG GKT VAL A   A+  G Q   + P  IL+ Q
Sbjct: 607  QALAVQEIKKDMMQPKPMDRLLCGDVGFGKTEVALRAAFKAITEGKQVAFLCPTTILSLQ 666

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            H     K  +N  I +E++   + ++ +++ L  +  G+  +IIGTH +    +Q++ L 
Sbjct: 667  HTATAMKRFENFPIRIEVLNRFVVESKQKEILRELKEGKVDMIIGTHRILSKDVQFHDLG 726

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+++DE+ RFGV+ + K+ +   +  VL ++ATPIPRTL ++ +G   +S++   P+ R 
Sbjct: 727  LLVIDEEQRFGVEHKEKIKEMKESIDVLSLSATPIPRTLQMSLIGIRSLSQLETPPSNRM 786

Query: 457  PIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            P++T +I  NR  + EVIE     L+   + +++   I+E      +   +         
Sbjct: 787  PVQTYVIEKNRSLVKEVIE---RELARQGQVFYLFNNIQEIYNVARQIKQDV-------P 836

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + IA+ HG+MS  + E VM  F +    +LI TT+IE GID+ +A+ I+IENA+ FGLA
Sbjct: 837  EAEIAVAHGKMSRDEIEEVMMQFTDNEVNVLICTTIIETGIDIPNANTILIENADTFGLA 896

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
            QL+Q++GRVGR + I+   L+  P   +++ +  RL  +K       G+ IA  DL  R 
Sbjct: 897  QLYQIKGRVGRSDRIAYAYLMVRPRKQVNEIAQKRLQAIKEFTELGSGYKIAMRDLTIRG 956

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
             G++LG  QSG         +++  +L+ A  + K  +   P++       +++  Y+ +
Sbjct: 957  AGDLLGPSQSGFIDT--VGIDMYIEMLQEAIAEKKGEVK--PEVKEPVRAQVQVDGYIPK 1012

Query: 690  YNEAFQF 696
                  F
Sbjct: 1013 QFAPLDF 1019


>gi|118587141|ref|ZP_01544570.1| transcription-repair coupling factor [Oenococcus oeni ATCC BAA-1163]
 gi|118432420|gb|EAV39157.1| transcription-repair coupling factor [Oenococcus oeni ATCC BAA-1163]
          Length = 1189

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 236/452 (52%), Gaps = 18/452 (3%)

Query: 214  KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                 +W    R   A  E +A ++  L  +++ +  +G   +V+ +  Q+      +  
Sbjct: 579  SLNSTDWAKTKRRVTAKVEDIADELIALYSKREGE--VGYAFSVDDQRQQEFDDGFAYPE 636

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q  +IK+I  DM  K  M R+L GDVG GKT VA  A   A+E   Q   + P  IL
Sbjct: 637  TVDQLRSIKEIKSDMENKKPMDRLLVGDVGFGKTEVAFRAAFKAIEDHKQVAFLTPTTIL 696

Query: 334  AQQHYEF-IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            +QQHY+  I++++   +I + +++        ++ ++++   Q  ++IGTH L    + +
Sbjct: 697  SQQHYQTAIERFSDFPEIKIAMLSRFNTAGQNKEVIKKLKAHQLDMVIGTHRLLSKDVAF 756

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
              L L+I+DE+ RFGV+ + K+ Q      VL +TATPIPRTL +  +G  D+S +   P
Sbjct: 757  DDLGLLIIDEEQRFGVKHKEKIKQLRANVDVLTLTATPIPRTLDMALVGARDLSVLETPP 816

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            A R PI+T ++  N        ++  LS G + +++  ++++ + +              
Sbjct: 817  ANRFPIQTYVLEENWPVIAYA-IEKELSRGGQTFFLHNRVQDIERTVGEIQ-------RI 868

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               +++  IHG+M++   E V+  F NG   +L+ TT+IE G+D+ +A+ +I+EN+E FG
Sbjct: 869  VPDANVGYIHGQMNETQLEDVLMDFLNGIYDVLVTTTIIETGVDIPNANTLIVENSERFG 928

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            L+QL+QLRGR+GR   ++     Y      ++++  RL  +++      GF +A  DL  
Sbjct: 929  LSQLYQLRGRIGRSNRLAYAYFTYPGDRQPTEDAQKRLEAIRDFTELGSGFKLAMRDLSI 988

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G++LG +Q G         EL+  +L+ A
Sbjct: 989  RGAGDLLGKQQHGFID--SVGYELYQQMLQEA 1018


>gi|288958061|ref|YP_003448402.1| transcription-repair coupling factor superfamily II helicase
           [Azospirillum sp. B510]
 gi|288910369|dbj|BAI71858.1| transcription-repair coupling factor superfamily II helicase
           [Azospirillum sp. B510]
          Length = 1171

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 142/450 (31%), Positives = 230/450 (51%), Gaps = 15/450 (3%)

Query: 225 RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
           R+      L     ALL +  +   +   P+     + Q+     P+  T  Q  AI+DI
Sbjct: 531 RKARVKKRLKDMAEALLKIAAERMLKKADPVLTPEGVYQEFAARFPYPETDDQLKAIEDI 590

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
             D+     M R++ GDVG GKT VAL A      +G Q  ++ P  +LA+QH+      
Sbjct: 591 FTDLGSGRPMDRLVCGDVGFGKTEVALRAAFMVAMSGKQVAVVVPTTLLARQHFRTFSSR 650

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                + V  ++  +    +    + +A G A I++GTHAL    +   +L +VIVDE+ 
Sbjct: 651 FAGLPVRVVQLSRMVTAREQTLVKKELAEGTADIVVGTHALLAKGLDLKRLGMVIVDEEQ 710

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            FGV+Q+ +L +     HVL +TATPIPRTL +   G  ++S I   P  R  ++T ++P
Sbjct: 711 HFGVKQKERLKELRADIHVLTLTATPIPRTLQMALSGVRELSLIATPPVDRLAVRTFVLP 770

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
            + +  + E +      G + +++CP+IE+        V ER   L       I   HG+
Sbjct: 771 YDPV-VIREAILREHYRGGQTFYVCPRIEDL-----AKVAERVRELVPEV--KIVTAHGQ 822

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M+  + E VM +F  G  ++L+AT +IE G+D+ +A+ +I+  A+ FGLAQL+Q+RGRVG
Sbjct: 823 MAASELEDVMTAFDEGKFEVLLATNIIESGLDIPNANTLIVHRADLFGLAQLYQIRGRVG 882

Query: 585 RGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQS 639
           R ++     L Y P  PL+  +  RL V++  +    GF +A  D+  R  G +LG +QS
Sbjct: 883 RSKKRGYAYLTYAPNKPLNATAQQRLHVIETLDSLGAGFQLASHDMDIRGAGNLLGEEQS 942

Query: 640 GMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           G  +      EL+  +LE A  +A+  + +
Sbjct: 943 G--QVREVGVELYQQMLEEAVANARAAMQE 970


>gi|221229524|ref|YP_002502940.1| putative transcription-repair coupling factor [Mycobacterium leprae
            Br4923]
 gi|219932631|emb|CAR70345.1| putative transcription-repair coupling factor [Mycobacterium leprae
            Br4923]
          Length = 1224

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 136/472 (28%), Positives = 233/472 (49%), Gaps = 17/472 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +AG++  L  ++Q     G     +     ++     F+ T  Q 
Sbjct: 601  DWANTKTKARCAVREIAGELVSLYAKRQA--SPGHAFGPDTPWQAEMEDAFGFTETVDQL 658

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 659  TAITEVKGDMEKSVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 718

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V+ ++     A  R  ++ +A G   I+IGTH L Q  + +  L LV
Sbjct: 719  RTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLV 778

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+  FGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 779  VVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 838

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   L+  L    +A+++  ++    ++  R              + +
Sbjct: 839  LTYVGPHDD-KQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCG-------LVPEARV 890

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E+ M  F N    +L+ TT++E G+D+ +A+ +++E A+ FGL+QLHQ
Sbjct: 891  VVAHGQMPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQ 950

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL  +    +   G  +A +DL+ R  G +
Sbjct: 951  LRGRVGRSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNV 1010

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG++QSG         +L+  L+  A +  + +      +T    + +RI L
Sbjct: 1011 LGVEQSGH--VAGVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDL 1060


>gi|158337270|ref|YP_001518445.1| transcription-repair coupling factor [Acaryochloris marina MBIC11017]
 gi|158307511|gb|ABW29128.1| transcription-repair coupling factor [Acaryochloris marina MBIC11017]
          Length = 1164

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 149/489 (30%), Positives = 248/489 (50%), Gaps = 20/489 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     +     + LA  +  L  ++  ++    P+  +    +++  + P+ PT  Q  
Sbjct: 561  WEKTKNKVRKSIKKLAVDLLKLYAQRAQQEGFTFPL--DQPWQEEMEDSFPYQPTADQLK 618

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            A +D+ +DM     M R++ GDVG GKT VA  A+  AV AG Q   +AP  IL QQHY 
Sbjct: 619  AAQDVKRDMENPRPMDRLVCGDVGFGKTEVATRAVFKAVTAGKQVAFLAPTTILTQQHYH 678

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +K+      I + ++        R+    R+  G+  I++GTH L   S+ +  L L++
Sbjct: 679  TLKERFAPYPIQIGLLNRFRSAEERKDIQNRLKTGELDIVVGTHQLLGKSVNFRDLGLLV 738

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV Q+ K+    T   VL ++ATPIPRTL +   G  ++S IT  P  R+PIK
Sbjct: 739  IDEEQRFGVNQKEKIKTLKTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIK 798

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSI 518
            T + P +  + +   ++  L  G + +++ P++E  +        E    L E    + I
Sbjct: 799  THLSPYD-PESIRSAVRQELDRGGQIFYVVPRVEGIE--------EVAGKLREMVPSARI 849

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            AI HG+M + + E+ M +F NG  ++L+ TT+IE G+D+   + I+IE+A+ FGL+QL+Q
Sbjct: 850  AIAHGQMVEGELEATMLTFSNGDAEILVCTTIIESGLDIPRVNTILIEDAQKFGLSQLYQ 909

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L Y     L++ +  RL  L+       G+ +A  D++ R  G +
Sbjct: 910  LRGRVGRAGIQAHAWLFYPNQSSLTEKARKRLRALQEFSQLGSGYQLAVRDMEIRGVGNL 969

Query: 634  LGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
            LG +QSG  +   F +    L +S+ EI  ++   +     DL          +  L Q 
Sbjct: 970  LGAEQSGQMEAIGFDLYMEMLDESINEIRGQEIPQVDEAQVDLNLTAFIPADYITDLDQK 1029

Query: 691  NEAFQFIRA 699
              A++ + +
Sbjct: 1030 MSAYRAVAS 1038


>gi|257791044|ref|YP_003181650.1| transcription-repair coupling factor [Eggerthella lenta DSM 2243]
 gi|257474941|gb|ACV55261.1| transcription-repair coupling factor [Eggerthella lenta DSM 2243]
          Length = 1161

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 133/452 (29%), Positives = 223/452 (49%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W+    +     + LA  +  +  R+      G     +    +++    P+  T  Q 
Sbjct: 566  DWSRALAKARKATKKLAFDLVDVYARRAS--VQGYRFGPDTAAQREMEEAFPYQETPDQL 623

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI D+  DM     M R++ GDVG GKT VAL A   A +   Q +++ P  ILAQQHY
Sbjct: 624  AAIADVKADMQSAKPMDRLVCGDVGFGKTEVALRAAFKATQDSKQVMVLCPTTILAQQHY 683

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+  +   + VE+++     A +  AL+    G   +++GTH L    +  + L LV
Sbjct: 684  TNFKERCEPFGVRVEVLSRFRTPAQQAAALKGFQEGDVDVLVGTHRLLSRDVNPHDLGLV 743

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + ++     +  VL ++ATPIPRT+ ++  G  D+S I   P  R+P+
Sbjct: 744  IIDEEQRFGVGHKEQMKNLRESIDVLTLSATPIPRTMQMSLSGVRDMSLILTPPDERRPV 803

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +  +   +  D V   ++  L+ G + Y++  ++   +E+  R              + +
Sbjct: 804  EVHVGEWD-PDVVSGAIRRELARGGQVYYVSNRVRSMEEAVRRVT-------AAAGEARV 855

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS    E VM+ F  G   +L+ATT+IE GID    + +IIE+++ +GLAQ++Q
Sbjct: 856  GVAHGQMSKEQLERVMEDFSAGELDVLVATTIIESGIDNPHTNTLIIEDSQRYGLAQMYQ 915

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            L+GRVGR    +    ++  H  L++ +  RL+ L    D   G  IA  DL+ R  G +
Sbjct: 916  LKGRVGRSCTQAYAYFMFPEHMELTEEAAARLTALNEHTDLGSGMRIAMRDLEIRGAGSL 975

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG         +L   +L  A    + 
Sbjct: 976  LGAEQSGNMS--AVGFDLFAQMLNQAVSATRE 1005


>gi|284046682|ref|YP_003397022.1| transcription-repair coupling factor [Conexibacter woesei DSM
           14684]
 gi|283950903|gb|ADB53647.1| transcription-repair coupling factor [Conexibacter woesei DSM
           14684]
          Length = 1112

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 150/460 (32%), Positives = 231/460 (50%), Gaps = 19/460 (4%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
            AR R A  E+    + L   RK+           +    ++     P+  T  Q  AI+
Sbjct: 523 KARARRAAQEMAGELLNLYAERKRRAGH---AFPPDSDWMREFEDAWPYRETPDQREAIE 579

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
            +  DM     M R++ GDVG GKT VAL A   A   G Q +++ P  ILAQQHY    
Sbjct: 580 QVKTDMETARPMDRLICGDVGYGKTEVALRAAFKAANDGRQVMVLVPTTILAQQHYGTFA 639

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +  ++    +E ++   P A +R A+     G   I+IGTH L    ++   L L+IVDE
Sbjct: 640 ERLKDYPFTIEHVSRFRPAAEQRAAIRAFTEGSVDILIGTHRLLSRDVRPRDLGLLIVDE 699

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + RFGV+Q+  L Q      V+ M+ATPIPRTL ++  G  DIS I   P GR+P+KT +
Sbjct: 700 EQRFGVKQKELLRQLKLKVDVIAMSATPIPRTLQMSIAGIRDISVIETPPEGRRPVKTYV 759

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
              +    V   ++   S G +A+++  ++E   E       ER  +L     +   + H
Sbjct: 760 GEYDE-QLVKSAIERERSRGGQAFFLHNRVETIDE-----TAERLRALCPE--ARFEVAH 811

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G++ +   E  M  F  G   +L+AT++IE GID+  A+ +++E A+ FGL+QL+Q+RGR
Sbjct: 812 GQLDEKTLEERMLRFLRGEADVLVATSIIESGIDIPQANTLMVERADLFGLSQLYQIRGR 871

Query: 583 VGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIK 637
           VGR  E +   LLY     L+ ++  RLS L +  +   GF +A  DL+ R  G +LG +
Sbjct: 872 VGRSRERAYAYLLYPSASALTADAAQRLSALSDYTELGAGFKVAMRDLEIRGAGNLLGDE 931

Query: 638 QSGM---PKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           QSG      F +    L +++ E+  +D    L +   L 
Sbjct: 932 QSGHVAALGFELYMQMLDEAVQEMGGEDGTEELAEPVRLD 971


>gi|229824545|ref|ZP_04450614.1| hypothetical protein GCWU000282_01889 [Catonella morbi ATCC 51271]
 gi|229785916|gb|EEP22030.1| hypothetical protein GCWU000282_01889 [Catonella morbi ATCC 51271]
          Length = 1183

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 133/446 (29%), Positives = 232/446 (52%), Gaps = 17/446 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A ++  L  +++ +  +G     +     +      +  T+ Q 
Sbjct: 571  EWAKTKRKVAAKIEDIADELIALYAKRERE--VGYAFGPDTPEQSEFESAFAYVETEDQL 628

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +  +I  DM +   M R+L GDVG GKT VA+ A+  AV  G Q   + P  ILAQQHY
Sbjct: 629  RSAIEIKADMEKSKPMDRLLVGDVGYGKTEVAMRAIFKAVMDGKQVAFLVPTTILAQQHY 688

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              + +   +    + +++  + +  + + ++ +  G  +I++GTH L    +Q+  L L+
Sbjct: 689  NSLVQRFADYPFEIRLMSRFVSKKQQDQTIDDLLTGAVNIVVGTHRLVSKDVQFQDLGLL 748

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L Q  +   VL +TATPIPRTL ++ +G  D+S I   P  R P+
Sbjct: 749  IVDEEQRFGVKHKERLKQLKSQVDVLTLTATPIPRTLHMSMIGVRDLSLIETPPNNRFPV 808

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N    +   ++  L+   + +++  ++   +            +L     + +
Sbjct: 809  QTYVMERND-GAIKSGIERELAREGQVFYLYNRVATIERRAM-----EIQALVPE--ARV 860

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+++ E+V+  F  G   +L+ TT+IE G+D+ + + + +E+A+H GL+ L+Q
Sbjct: 861  AYAHGQMSEVELETVLVDFIQGAYDVLVTTTIIETGVDIPNVNTLFVEDADHMGLSTLYQ 920

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   ++   L+Y P   LS+ S  RL  ++       GF IA  DL  R  G +
Sbjct: 921  LRGRVGRTNRVAYAYLMYEPFKSLSEVSEKRLQAVREFTELGSGFKIAMRDLSIRGAGNL 980

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +QSG    +     L+  +L+ A
Sbjct: 981  LGKQQSGFIDSVGFD--LYSQMLKEA 1004


>gi|312864113|ref|ZP_07724348.1| transcription-repair coupling factor [Streptococcus vestibularis
           F0396]
 gi|311100345|gb|EFQ58553.1| transcription-repair coupling factor [Streptococcus vestibularis
           F0396]
          Length = 1066

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 149/452 (32%), Positives = 235/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +    +    +  ++ 
Sbjct: 428 KLNDGRFQKTKQKVSKQVEDIADDLLKLYA--ERSQLKGFAFSPDDDNQRDFDDDFSYAE 485

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +IK++ +DM     M R+L GDVG GKT VA+ A   AV  G Q  I+ P  +L
Sbjct: 486 TVDQLRSIKEVKEDMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVL 545

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A QHY   K+  +N  + V+ ++    +  + + +E +A G+  IIIGTH L    +++ 
Sbjct: 546 AHQHYLNFKERFENHAVEVDELSRFRSKKEQNETIENLAKGRIDIIIGTHRLLSKDVKFS 605

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 606 DLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSMLGIRDLSIIETAPT 665

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + E +   +  G + ++I  ++E           ++ + LHE 
Sbjct: 666 NRYPVQTYVMETN-PGLIREAILREMDRGGQIFYIYNRVETID--------KKVSELHEL 716

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              + I  +HG+MS++  E+ +  F NG   +L+ATT+IE GID+ + + + IENA+H G
Sbjct: 717 VPEARIGFVHGQMSEVMLENTLLDFLNGDYDVLVATTIIETGIDISNVNTLFIENADHMG 776

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 777 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLDAIKGFTELGSGFKIAMRDLSI 836

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 837 RGAGNILGSSQSGFID--SVGFEMYSQLLEEA 866


>gi|189485430|ref|YP_001956371.1| transcription-repair coupling factor Mfd [uncultured Termite group
           1 bacterium phylotype Rs-D17]
 gi|170287389|dbj|BAG13910.1| transcription-repair coupling factor Mfd [uncultured Termite group
           1 bacterium phylotype Rs-D17]
          Length = 1048

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 221/458 (48%), Gaps = 22/458 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                 W              A ++  L +++   K    P        +++    P+  
Sbjct: 447 SMDTLAWERVKSRAREAAAKFAEELLKLYVQRSLIKRK--PFGPGTAWEKELENTFPYDE 504

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  AI+DI  D  +   M R++ GDVG GKT V + A   AV    Q  I+ P  +L
Sbjct: 505 TPGQLKAIEDIKNDFLKPYPMERLVCGDVGYGKTEVVVRAAFKAVHESMQTAILVPTTVL 564

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY           I V +++    +A +++  + + +G   IIIGTH L Q  +++ 
Sbjct: 565 AQQHYNTFCDRLSPFPIKVAVLSRFQTKAKQKEITQDLENGLIDIIIGTHRLLQKDVKFK 624

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+HRFGV+Q+ K+        +L+++ATPIPRTL  +  G  D+S I   P 
Sbjct: 625 NLGLLVIDEEHRFGVKQKEKIKSMKKNIDILMLSATPIPRTLSSSLSGFRDLSVIETPPF 684

Query: 454 GRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           GR PI+T I     N I  +IE     LS   + +++  +IE            +  S+ 
Sbjct: 685 GRLPIETSISLYDENLIKNIIE---AELSRNGQVFYVYNKIETILT--------KAASIR 733

Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           E      + II+G+M   D E +M  F N    +L+ATT+IE G+D+   + +IIE  E+
Sbjct: 734 ELVPGIKLGIIYGQMKAKDIEEIMWKFINMELDVLLATTIIESGLDIPSVNTMIIEEVEN 793

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTRLSVLKNT---EDGFLIAEEDLK 626
           FGL+QL+QLRGR+GR  + + C L Y    LS  +  RL  ++       GF +A +DL+
Sbjct: 794 FGLSQLYQLRGRIGRDRKKAYCYLFYKDKTLSDEAVKRLEAIREFGELGSGFRLALKDLE 853

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            R  G IL   Q G  + +     +   LLE   K  K
Sbjct: 854 IRGAGGILSSSQHGFVRDIGYD--MFAKLLEEEGKKVK 889


>gi|289757102|ref|ZP_06516480.1| LOW QUALITY PROTEIN: transcription-repair coupling factor Mfd
           [Mycobacterium tuberculosis T85]
 gi|289712666|gb|EFD76678.1| LOW QUALITY PROTEIN: transcription-repair coupling factor Mfd
           [Mycobacterium tuberculosis T85]
          Length = 849

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 235/474 (49%), Gaps = 17/474 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W +   +       +AG++  L  ++Q     G   + +     ++     F+ T  Q 
Sbjct: 212 DWANTKTKARRAVREIAGELVSLYAKRQA--SPGHAFSPDTPWQAELEDAFGFTETVDQL 269

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 270 TAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 329

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +   +      + ++ ++     A  R  ++ +A G   I+IGTH L Q  +++  L LV
Sbjct: 330 QTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLV 389

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 390 VVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 449

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            T + P +   ++   L+  L    +A+++  ++             R   L     + +
Sbjct: 450 LTYVGPHDD-KQIAAALRRELLRDGQAFYVHNRVSSIDA-----AAARVRELVPE--ARV 501

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+M +   E+ +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 502 VVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 561

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 562 LRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNV 621

Query: 634 LGIKQSGMPKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           LGI+QSG    +     +      LE  R   +         T+   + +RI L
Sbjct: 622 LGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDL 675


>gi|310657789|ref|YP_003935510.1| transcription-repair coupling factor [Clostridium sticklandii DSM
            519]
 gi|308824567|emb|CBH20605.1| transcription-repair coupling factor [Clostridium sticklandii]
          Length = 1130

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 227/464 (48%), Gaps = 18/464 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     + +A  +  L    + +   G     +    ++     P+  T  Q 
Sbjct: 564  EWKKTKAKAKKAVDEIAQDLIDLYA--ERRDARGYAFTEDTPWQKEFESLFPYEETVDQI 621

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+D+ +DM     M R++ GDVG GKT VA+ A+  +     Q   + P  ILAQQHY
Sbjct: 622  NAIEDVKKDMQNIKPMDRLICGDVGYGKTEVAIRAIFKSCMDSKQVAFLVPTTILAQQHY 681

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              +K+      I VE+++    +  + + ++    G   ++IGTH +  + + +  L L+
Sbjct: 682  NNLKERFAGYPIRVEVVSRFKTKKAQEQIIDDARRGLVDVLIGTHRILSNDVSFKDLGLL 741

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  L +      VL ++ATPIPRTL  +  G  D+S + E P  R PI
Sbjct: 742  VVDEEQRFGVKHKELLKKLKKDVDVLTLSATPIPRTLHFSLSGIRDMSLLEEPPEDRHPI 801

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +    R   +++ L+  L+ G + +++  +++         + +    L     +++
Sbjct: 802  MTYVTEA-REGIILDALERELARGGQVFFVYNRVQTID-----KMADIIRRLVPD--ANL 853

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+MS    E++M  F      +L++TT+IE G+D+ +A+ +I+ +A+  GL+QL+Q
Sbjct: 854  AVAHGQMSPRQLENIMVDFLEKEYDILLSTTIIETGMDISNANTMIVYDADKMGLSQLYQ 913

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +    +Y     L++ S  RL  +K       GF IA  DL+ R  G I
Sbjct: 914  LRGRVGRSSRQAYAYFMYQKDKVLTEVSEKRLKAIKEFTEFGSGFKIAMRDLEIRGAGNI 973

Query: 634  LGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHILTQDPDLT 674
            LG +Q G    +        L  ++  +  +  +  +  + +L 
Sbjct: 974  LGERQHGHMTEIGYDLYVKMLDAAIRNLQGQVVEQKVDTEIELD 1017


>gi|325281936|ref|YP_004254478.1| transcription-repair coupling factor [Odoribacter splanchnicus DSM
           20712]
 gi|324313745|gb|ADY34298.1| transcription-repair coupling factor [Odoribacter splanchnicus DSM
           20712]
          Length = 1104

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 135/428 (31%), Positives = 215/428 (50%), Gaps = 15/428 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++  +  + +A ++  L  R+  KKE     + +  + +++  +  +  T  Q  
Sbjct: 492 WNKLKQKTKSRVKDIARELIALYARR--KKEAAFAFSKDSYLQEEMEVSFMYDETPDQIK 549

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+ +  DM +   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY 
Sbjct: 550 AIEAVKADMEKPQVMDRLICGDVGFGKTEVAIRAAFKAVADSKQVAVLVPTTVLAYQHYH 609

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +     VE I+        +K L  +  G+  IIIGTH L    + +  L L+I
Sbjct: 610 TFSRRLEGMPCRVEYISRMKKPGEIKKILNDLKEGKVDIIIGTHRLTSKDVVFKDLGLLI 669

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL         L MTATPIPRTL  + +G  D+S I   P  R PI 
Sbjct: 670 VDEEQKFGVGVKEKLKTLKLNVDTLTMTATPIPRTLQFSLMGARDMSIIRTPPPNRYPIV 729

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +    + E +   ++   + ++I  ++E  ++            +     + +A
Sbjct: 730 TELHRFDE-QLIKEVILYEMARNGQVFFIHNRVETIRDIQG-----MLQRIVPQVKTCVA 783

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG+M   + E VM  F  G   +LIATT+IE G+D+ +A+ +II  A+++GL+ LHQL
Sbjct: 784 --HGQMEGEELEKVMHDFVRGDYDVLIATTIIESGLDIPNANTMIINQAQNYGLSDLHQL 841

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   ++ ++  RL  +++      GF IA +DL  R  G IL
Sbjct: 842 RGRVGRSNKKAFCYLLTPPLDTVNSDARRRLKAIEDFSGLGSGFNIAMQDLDIRGAGNIL 901

Query: 635 GIKQSGMP 642
           G +QSG  
Sbjct: 902 GAEQSGFI 909


>gi|292669445|ref|ZP_06602871.1| transcription-repair-coupling factor [Selenomonas noxia ATCC 43541]
 gi|292648898|gb|EFF66870.1| transcription-repair-coupling factor [Selenomonas noxia ATCC 43541]
          Length = 1097

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 160/564 (28%), Positives = 256/564 (45%), Gaps = 44/564 (7%)

Query: 106 FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL-PT 164
           F R    L  +   G +I         ++   +    Y+ H S          V +L   
Sbjct: 405 FGRHKAKLHRMAPAGDRI---------RHFREIAPGDYVVHVSH--GIGKYIGVETLEVA 453

Query: 165 GLSVDLFKKIIVEALSRLPVLPEWIEKD---LLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
           G+  D         +        ++  D   LLQK        A   +    +    +W 
Sbjct: 454 GVHRDYLH------IQYGGDDKLFVPTDQVGLLQKY-----IGAEGSVPRLHRMGTADWA 502

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
               +     E +A ++  +   +Q     G     +    ++     P+  T  Q  A+
Sbjct: 503 RARAKAQKSVEDIADKLLEIYAERQLA--KGHAFTPDDAGQREFEEAFPYQETDDQLRAV 560

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +I +DM  +  M R+L GDVG GKT VA+ A   A   G Q  ++ P  +LAQQHY+  
Sbjct: 561 AEIKRDMESEKPMDRLLCGDVGFGKTEVAVRAAFKAAMDGFQVAVLVPTTVLAQQHYQTF 620

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ-DSIQYYKLILVIV 400
                     V+++        +   L  +A G+  I+IGTHA+     +++  L L+IV
Sbjct: 621 AARFAEFAPKVDVVCRFRSLREQAATLRDVARGRVDILIGTHAILNRKRVRFQNLGLLIV 680

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+ RFGV Q+ K+ + A    VL ++ATPIPRTL ++  G  D+S I   PA R P+++
Sbjct: 681 DEEQRFGVTQKEKIKEFAAGVDVLTLSATPIPRTLHMSLAGARDMSIIETPPADRLPVQS 740

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            ++  +    +   ++  LS G + Y+I  +IE         + E    L     + IA 
Sbjct: 741 YVVESSD-AMMRGAIERELSRGGQVYFIYNRIESID-----RMREHLMRLVPE--ARIAS 792

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG+M++   E VM  F  G   +L+AT+++E GIDV +A+ II+ +A+ FGL+QL+Q+R
Sbjct: 793 AHGQMNEDILEQVMMDFYEGHYDILLATSIVENGIDVANANTIIVYDADRFGLSQLYQMR 852

Query: 581 GRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILG 635
           GRVGR  +++     Y     LS+ +  RL  +K       GF IA  DL+ R  G +LG
Sbjct: 853 GRVGRSAKMAFAYFTYRRDKALSETAEKRLQAMKEFAQLGSGFKIAMRDLEIRGAGSLLG 912

Query: 636 IKQSGMPKFLIAQPELHDSLLEIA 659
            +Q G         E++  LLE A
Sbjct: 913 AQQHGHI--AGVGFEMYVKLLEEA 934


>gi|119356706|ref|YP_911350.1| transcription-repair coupling factor [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354055|gb|ABL64926.1| transcription-repair coupling factor [Chlorobium phaeobacteroides
           DSM 266]
          Length = 1127

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 141/459 (30%), Positives = 232/459 (50%), Gaps = 17/459 (3%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P  +K       A++     +L    I L+ +  + K   G     +    ++   +  F
Sbjct: 492 PSLSKLGSSKWGAKKDKVRRKLRDIAINLIKIYAKRKMTEGFACCADTIFTREFEASFVF 551

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q  AI+++ +DM   + M R++ GD G GKT +A+ A   AVE+  Q  I+ P  
Sbjct: 552 DETPDQLKAIEEVKKDMQASHPMDRLICGDAGFGKTEIAMRAAFKAVESKKQVAILTPTT 611

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA QH E   +  +N  I + +++  + +  + K +E+I  GQ  I+IGTH L    + 
Sbjct: 612 ILAHQHGESFTRRFENFPISIAVLSRFVARKDQEKIIEKIKAGQIDIVIGTHRLVSKDVL 671

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+++DE+  FGV+ + KL         L M+ATPIPRTL  + LG  D+S ++  
Sbjct: 672 FKDLGLLVIDEEQHFGVEVKEKLRDSFPGVDSLTMSATPIPRTLQFSMLGARDLSIVSTP 731

Query: 452 PAGRKPIKTVIIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           P  R+P++T++   +    +I+  ++  L    + +++  +I   +E       +    L
Sbjct: 732 PKNRQPVETILTGYD--PTIIQSAIRHELQRDGQVFFLHNRISGLEEVQ-----QTLRDL 784

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             +  + I I HG+M   + E VM  F      +LI+T++I  G+D+ +A+ III  A+ 
Sbjct: 785 VPY--ARIVIAHGQMPSKELEKVMMDFMQKEIDVLISTSIISSGLDISNANTIIINRADM 842

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDL 625
           FGL+ L+QLRGRVGR E  +SC ++  P   L K +  RL+V++       GF IA  DL
Sbjct: 843 FGLSDLYQLRGRVGRSERKASCYMITPPLNTLKKEAVQRLAVIESFTELGSGFTIALRDL 902

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R  G +LG +QSG    L     L+  +LE    + K
Sbjct: 903 DIRGAGNLLGAEQSGFIHELGFD--LYQKMLEETVAELK 939


>gi|188995578|ref|YP_001929830.1| transcription-repair coupling factor [Porphyromonas gingivalis ATCC
           33277]
 gi|188595258|dbj|BAG34233.1| transcription-repair coupling factor [Porphyromonas gingivalis ATCC
           33277]
          Length = 1122

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 146/451 (32%), Positives = 225/451 (49%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q K+E G   + +  +  ++  +  +  T  QE 
Sbjct: 505 WQKLKERTKKRVKDIARDLIRLYA--QRKEERGFAFSPDSYLQHELEASFLYEDTPDQER 562

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  ++  DM     M R++ GDVG GKT VA+ A   A   G Q  I+ P  +LA QHY+
Sbjct: 563 ATAEVKADMESDRPMDRLICGDVGFGKTEVAVRAAFKAATDGKQVAILVPTTVLAYQHYQ 622

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +   QN  + +E I+        +  L  +A G+  IIIGTH L  + I+++ L L++
Sbjct: 623 TFRDRLQNFPVRIEYISRARSAKDIKAILHDLAEGRIDIIIGTHRLVSNDIRFHDLGLLV 682

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL +       L M+ATPIPRTL  + +G  D+S I   P  R P+ 
Sbjct: 683 IDEEQKFGVAVKEKLRKLQVNVDTLTMSATPIPRTLQFSLMGARDLSNINTPPPNRYPVA 742

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +  D V E +   +S   + + +  +I+  +E       E          + +A
Sbjct: 743 TELARFS-PDIVREAVNFEMSRNGQVFIVHNRIDNIEEIAGIVQREV-------PDARVA 794

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HGRMS  + E ++  F +    +L+ATT+IE GIDV +A+ III++A  +GL++LHQL
Sbjct: 795 VGHGRMSPTELERLILDFVHYEYDVLVATTIIENGIDVPNANTIIIDDAHRYGLSELHQL 854

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    + C LL  P   LS +S  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 855 RGRVGRSNRKAFCYLLSPPLSVLSDDSRRRLQAIENFSDLGSGIRIALQDLDIRGAGNVL 914

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG    L    E +  +   A  + K 
Sbjct: 915 GAEQSGFIADL--GYETYSKVFNEAVSELKA 943


>gi|110639820|ref|YP_680030.1| transcription-repair coupling factor [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282501|gb|ABG60687.1| transcription-repair coupling factor [Cytophaga hutchinsonii ATCC
           33406]
          Length = 1122

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 133/452 (29%), Positives = 225/452 (49%), Gaps = 17/452 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W +   +     + +A ++  L  ++  K   G     +  +  ++  +  +  T  Q 
Sbjct: 508 DWENKKSKVKRQVKDIAKELIQLYAKR--KAAPGFAYTPDSFLQVELESSFMYEDTPDQS 565

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A  D+ +DM   + M R++ GDVG GKT +A+ A   AV  G Q  ++ P  ILA QHY
Sbjct: 566 KATADVKKDMESPHPMDRLVCGDVGFGKTEIAVRAAFKAVCDGKQVAVLVPTTILAMQHY 625

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +  +        +VE I         ++ L+R+  G+ +I+IGT  +    +++  + L+
Sbjct: 626 KTFRDRLSRFPCVVEYINRFKTAGQIKETLKRVKEGKTNILIGTQRVISKDVEFQNVGLL 685

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ +FGV+ + KL +       L +TATPIPRTL  + +G  D+S I   P  R+P+
Sbjct: 686 IIDEEQKFGVKVKEKLREFKINIDTLTLTATPIPRTLHFSLMGARDLSIIATPPPNRQPV 745

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            T I   +    + + +   L  G + +++  ++++     F         L     + +
Sbjct: 746 TTEIHVFDE-AFIRDAISFELKRGGQVFFVHNRVKDIDGMAF-----LIKKLVPD--ARV 797

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              HG+M     E VM  F  G   +L++T +IE G+D+ +A+ III +A  FGL+ LHQ
Sbjct: 798 TFAHGQMEGDKLEEVMLKFVEGEYDVLVSTNIIESGLDIPNANTIIINSAHMFGLSDLHQ 857

Query: 579 LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           +RGRVGR  + + C LL      L+ +S  RLSVL+      DGF +A  DL  R  G +
Sbjct: 858 MRGRVGRSNKKAFCYLLTPSVSALTGDSRKRLSVLEEFSDLGDGFKVAMRDLDIRGAGNM 917

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           LG +QSG    L     ++  +L+ A ++ K 
Sbjct: 918 LGAEQSGFITDLGFD--MYHKILDEAIQELKE 947


>gi|34541397|ref|NP_905876.1| transcription-repair coupling factor [Porphyromonas gingivalis W83]
 gi|34397714|gb|AAQ66775.1| transcription-repair coupling factor [Porphyromonas gingivalis W83]
          Length = 1122

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 146/451 (32%), Positives = 225/451 (49%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q K+E G   + +  +  ++  +  +  T  QE 
Sbjct: 505 WQKLKERTKKRVKDIARDLIRLYA--QRKEERGFAFSPDSYLQHELEASFLYEDTPDQER 562

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  ++  DM     M R++ GDVG GKT VA+ A   A   G Q  I+ P  +LA QHY+
Sbjct: 563 ATAEVKADMESDRPMDRLICGDVGFGKTEVAVRAAFKAATDGKQVAILVPTTVLAYQHYQ 622

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +   QN  + +E I+        +  L  +A G+  IIIGTH L  + I+++ L L++
Sbjct: 623 TFRDRLQNFPVRIEYISRARSAKDIKAILHDLAEGRIDIIIGTHRLVSNDIRFHDLGLLV 682

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL +       L M+ATPIPRTL  + +G  D+S I   P  R P+ 
Sbjct: 683 IDEEQKFGVAVKEKLRKLQVNVDTLTMSATPIPRTLQFSLMGARDLSNINTPPPNRYPVA 742

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +  D V E +   +S   + + +  +I+  +E       E          + +A
Sbjct: 743 TELARFS-PDIVREAVNFEMSRNGQVFIVHNRIDNIEEIAGIVQREV-------PDARVA 794

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HGRMS  + E ++  F +    +L+ATT+IE GIDV +A+ III++A  +GL++LHQL
Sbjct: 795 VGHGRMSPTELERLILDFVHYEYDVLVATTIIENGIDVPNANTIIIDDAHRYGLSELHQL 854

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR    + C LL  P   LS +S  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 855 RGRVGRSNRKAFCYLLSPPLSVLSDDSRRRLQAIENFSDLGSGIRIALQDLDIRGAGNVL 914

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG    L    E +  +   A  + K 
Sbjct: 915 GAEQSGFIADL--GYETYSKVFNEAVSELKA 943


>gi|306992403|gb|ADN19318.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 430

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 161/431 (37%), Positives = 253/431 (58%), Gaps = 8/431 (1%)

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKS 198
           +P         +N   I  +Y L  GL+ +  KKI+  AL   +  + E+ +++ L +K 
Sbjct: 4   NPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIKKIMFNALKDYVQEIEEFFDEEFLFEKG 63

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258
              I  A   I+ P+     E     + R  Y EL   Q+AL LM++  K + GI    E
Sbjct: 64  LMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMALFLMKRSVKGKKGIKF--E 118

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
               +  L  +PF  T +Q   +K+I+ DM+    M R++QGDVGSGKT+VA  +M  A+
Sbjct: 119 RVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGDVGSGKTVVAACSMYIAI 178

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           + G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  +++++ LE+I +G   I
Sbjct: 179 KNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKKEVLEKIKNGDYDI 238

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           ++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K   P VL+MTATPIPRTL L 
Sbjct: 239 VVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENPDVLVMTATPIPRTLALI 298

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
             GD+DIS I + P GRK +KT +I  +   +  E     + +G++ Y +CP IEE  + 
Sbjct: 299 LYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQVYVVCPLIEESDKI 358

Query: 499 NFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           N  S    +  +++     + + ++HG+M+D DKE VM+ F N    +L++TTVIEVG++
Sbjct: 359 NAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVNREIDILVSTTVIEVGVN 418

Query: 557 VVDASIIIIEN 567
           V +A+++I+EN
Sbjct: 419 VPNATVMIVEN 429


>gi|291515893|emb|CBK65103.1| transcription-repair coupling factor (mfd) [Alistipes shahii WAL
           8301]
          Length = 1112

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 138/477 (28%), Positives = 235/477 (49%), Gaps = 21/477 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + ++ ++  L  ++  K   G   + +  +  ++  +  +  T  Q+S
Sbjct: 505 WQKLKNATKKAVKDISRELIALYAKR--KASKGYAFSHDSYLQHELEASFRWEDTPDQQS 562

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A   I +DM     M R++ GDVG GKT VA+ A   A   G Q  ++ P  ILA QHY 
Sbjct: 563 ATAAIKKDMESDQPMDRLVCGDVGFGKTEVAIRAAFKAAVDGKQVAVLVPTTILALQHYR 622

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++  + VE I          +  E +A G+  I+IGTH +    I +  L L+I
Sbjct: 623 SFTERLRDFPVRVEYINRTKSTKEVSQIREDLASGKIDILIGTHKMLGKQIVFRDLGLLI 682

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KLT+ + +   L +TATPIPRTL  + +G  D+S I+  P  R+PI 
Sbjct: 683 IDEEQKFGVAAKEKLTEMSVSVDTLTLTATPIPRTLRFSLMGSRDLSVISTPPPNRQPIL 742

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SS 517
           T     +  + + + ++  L+ G + Y++  ++E+               L       + 
Sbjct: 743 TESHVFSE-EIIRDAVEAELARGGQVYFVHNRVEDLPA---------LQGLITRLCPKAR 792

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A+ HG+M     E ++  F  G   +L++TT++E GID+ +A+ II++NA++FGL+ LH
Sbjct: 793 VAVGHGKMPAEQLEKLIMDFIYGEFDVLVSTTIVENGIDIPNANTIIVDNAQNFGLSDLH 852

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR  +   C LL  P   LS ++  RL  ++   D   GF IA +DL  R  G 
Sbjct: 853 QLRGRVGRSNQKGYCYLLSPPDELLSSDARRRLRAIEEFSDLGSGFNIAMQDLDIRGAGN 912

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           +LG +QSG    +    E +  ++  A  + +      P L+    + +  + ++  
Sbjct: 913 LLGAEQSGFIADI--GFETYQKIMNEAVAELRAEGLHVPGLSDGEQEVVEQMRFIDD 967


>gi|260435284|ref|ZP_05789254.1| transcription-repair coupling factor [Synechococcus sp. WH 8109]
 gi|260413158|gb|EEX06454.1| transcription-repair coupling factor [Synechococcus sp. WH 8109]
          Length = 1203

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 138/463 (29%), Positives = 233/463 (50%), Gaps = 20/463 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W             +A  +  L   +Q  +  G     +G    ++  + P+ PT  Q  
Sbjct: 582  WNKAKERAKKAVRKVALDLVKLYAERQ--QAAGFAFPTDGPWQVEMEESFPYDPTPDQLK 639

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            A  D+ +DM ++  M R++ GDVG GKT VA+ A+  A+ AG Q  ++AP  +LAQQH+ 
Sbjct: 640  ATADVKRDMERQEPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWR 699

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             + +      I V ++      + R+  L+ +  G    ++GTH L      + +L L++
Sbjct: 700  TLSERFAPYPIKVALLNRFRTASERKSILDGLKQGTIDAVVGTHQLLSKGASFQELGLLV 759

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  ++S IT  P  R+PIK
Sbjct: 760  VDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIK 819

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T +  ++  + V   ++  L  G + +++ P++E         + E    L        +
Sbjct: 820  THLASLD-PEAVRSAIRQELDRGGQVFYVVPRVE--------GIDEVAAGLRAMLPGLKL 870

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++ + E+ M +F  G   +++ TT++E G+D+   + I+IE+A  FGLAQL+Q
Sbjct: 871  LVAHGQMAEGELENAMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFGLAQLYQ 930

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L Y  +  LS  +  RL  ++       G+ +A  D++ R  G +
Sbjct: 931  LRGRVGRSGIQAHAWLFYPGNASLSDTARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNL 990

Query: 634  LGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHILTQDPDL 673
            LG++QSG  + +        L +SL EI  +D   +     DL
Sbjct: 991  LGVQQSGQMETIGFDLYMEMLQESLAEIQGQDIPSVEDTQVDL 1033


>gi|296111607|ref|YP_003621989.1| transcription-repair coupling factor [Leuconostoc kimchii IMSNU
            11154]
 gi|295833139|gb|ADG41020.1| transcription-repair coupling factor [Leuconostoc kimchii IMSNU
            11154]
          Length = 1174

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 143/470 (30%), Positives = 243/470 (51%), Gaps = 26/470 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R+     E +A  +  L  +++ ++        +     K      +  T  Q 
Sbjct: 565  QWAKTKRQVATKIEDIADDLIALYAQREAQQG--YAYPPDDTDQLKFDTAFGYPETPDQI 622

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I  DM +   M R+L GDVG GKT VAL A+  AV AG Q   +AP  IL QQHY
Sbjct: 623  RSIEEIKLDMQKSRPMDRLLVGDVGFGKTEVALRAVFKAVHAGKQVAFLAPTTILVQQHY 682

Query: 339  EFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E I     +   I + +++     A  ++ + ++   +  +++GTH L    + +  L L
Sbjct: 683  ETILARFDDFPKIKIGVLSRFQTTARNKEVIRKLNAHEIDVVVGTHRLLSKDVDFADLGL 742

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +I+DE+ RFGV+ + +L Q   +  VL +TATPIPRTL +  +G  D+S I   PA R P
Sbjct: 743  LIIDEEQRFGVKHKERLKQLRHSVDVLTLTATPIPRTLNMAMVGARDLSVIETPPANRYP 802

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-- 515
            I+T ++  + +  V   ++  LS   + +++  ++ +          +R  S  E     
Sbjct: 803  IQTYVLEADWV-IVRNAIEKELSRNGQVFYLHNRVADI---------DRVASQIEDLVPS 852

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + +A IHG+MS+   ES++  F NG   +L+ TT+IE G+D+ +A+ +I+ENA+H GL+Q
Sbjct: 853  ARVAAIHGQMSETQLESILYDFLNGNYDVLVTTTIIETGVDIPNANTLIVENADHMGLSQ 912

Query: 576  LHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
            L+QLRGRVGR   ++     Y      S+ +  RL  +++      GF IA  DL  R  
Sbjct: 913  LYQLRGRVGRSTRLAYAYFTYPFSRTPSEEAEKRLEAIRDFTELGSGFRIAMRDLSIRGA 972

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
            G++LG +Q G    +     ++ ++L+ A  + +    ++PD  +V+ Q 
Sbjct: 973  GDLLGKQQHGFIDSVGYD--MYMAMLKEAVANKQ----KNPDDKTVKQQP 1016


>gi|293364521|ref|ZP_06611246.1| transcription-repair coupling factor [Streptococcus oralis ATCC
           35037]
 gi|291317029|gb|EFE57457.1| transcription-repair coupling factor [Streptococcus oralis ATCC
           35037]
          Length = 1167

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 146/452 (32%), Positives = 234/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDEQHAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQVDILIGTHRVLSKDVVFS 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++           ++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTID--------QKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|313835372|gb|EFS73086.1| transcription-repair coupling factor [Propionibacterium acnes
            HL037PA2]
 gi|314972378|gb|EFT16475.1| transcription-repair coupling factor [Propionibacterium acnes
            HL037PA3]
 gi|328908370|gb|EGG28129.1| transcription-repair coupling factor [Propionibacterium sp. P08]
          Length = 1194

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 232/489 (47%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 589  DWRKRKARARKAVREIAAELIKLYAARQA--TKGHAFGPDTAWQRELEDAFAYVETPDQL 646

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 647  TTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 706

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++     A  R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 707  QTFTERYAGFPVKVAALSRFQTDAEAREVLEGLKRGTVDVVVGTHRLLAKEVEFKDLGLV 766

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 767  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 826

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +++  +        L     + I
Sbjct: 827  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAVK-----LRELVPE--ARI 878

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 879  VTAHGQMNEKQLERIMVDFWERRADVLVCTTIVESGIDIPTANTLLIDRADLMGLSQLHQ 938

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR         LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 939  LRGRVGRSRARGYAYFLYPADKPLSQTAHDRLATMAAHTDLGAGMAIAMKDLEIRGAGNL 998

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 999  LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDGTAADEPEMRIELPVDANLPVEYVETE 1056

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1057 RLRLEMYKR 1065


>gi|307702811|ref|ZP_07639761.1| transcription-repair coupling factor [Streptococcus oralis ATCC
           35037]
 gi|307623667|gb|EFO02654.1| transcription-repair coupling factor [Streptococcus oralis ATCC
           35037]
          Length = 1166

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 146/452 (32%), Positives = 234/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 555 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDEQHAFDDAFPYVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 613 TDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +    + + 
Sbjct: 673 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQVDILIGTHRVLSKDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++           ++ + L E 
Sbjct: 793 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTID--------QKVSELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 844 IPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 964 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 993


>gi|15827046|ref|NP_301309.1| transcription-repair coupling factor [Mycobacterium leprae TN]
 gi|13092593|emb|CAC29760.1| putative transcription-repair coupling factor [Mycobacterium leprae]
          Length = 1224

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 232/472 (49%), Gaps = 17/472 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +AG++  L  ++Q     G     +     ++     F+ T  Q 
Sbjct: 601  DWANTKTKARCAVREIAGELVSLYAKRQA--SPGHAFGPDTPWQAEMEDAFGFTETVDQL 658

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GK  +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 659  TAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 718

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V+ ++     A  R  ++ +A G   I+IGTH L Q  + +  L LV
Sbjct: 719  RTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLV 778

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+  FGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 779  VVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 838

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   L+  L    +A+++  ++    ++  R              + +
Sbjct: 839  LTYVGPHDD-KQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCG-------LVPEARV 890

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E+ M  F N    +L+ TT++E G+D+ +A+ +++E A+ FGL+QLHQ
Sbjct: 891  VVAHGQMPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQ 950

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL  +    +   G  +A +DL+ R  G +
Sbjct: 951  LRGRVGRSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNV 1010

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LG++QSG         +L+  L+  A +  + +      +T    + +RI L
Sbjct: 1011 LGVEQSGH--VAGVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDL 1060


>gi|281425314|ref|ZP_06256227.1| hypothetical protein HMPREF0971_02286 [Prevotella oris F0302]
 gi|281400607|gb|EFB31438.1| transcription-repair coupling factor [Prevotella oris F0302]
          Length = 1139

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 156/584 (26%), Positives = 257/584 (44%), Gaps = 41/584 (7%)

Query: 94  LNDGTGEITLLFFYRKT---EMLKNVFFE-GRKITVTGKIKKLKNRIIMVHP-HYIFHNS 148
             D    + L FF          K      G +    GK+      +  + P  +I H  
Sbjct: 406 FTDD--ALKLCFFTDHQIFDRYHKYNLKSDGARA---GKMALTMKELQEMEPGDFIVHV- 459

Query: 149 QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
            D        +  +P G S     +II +   ++ V    + K  + K       E    
Sbjct: 460 -DFGIGKFGGLVRVPAGNSYQEMIRIIYQHNDKVDVSIHSLYK--ISKYRRADTGE---- 512

Query: 209 IHNPRKAKDFEWTSPAR---ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI 265
              P +       +  R   +     + +A  +  L    Q + E G   + +  +  ++
Sbjct: 513 ---PPRLSTLGTGAWDRLKEKTKKRIKDIARDLIKLYA--QRRHEKGYAFSGDSYLQHEL 567

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
             +  +  T  Q  A +D+  DM  +  M R++ GDVG GKT VA+ A   A     Q  
Sbjct: 568 EASFLYEDTPDQSKATQDVKADMESQRPMDRLVCGDVGFGKTEVAVRAAFKAACDSKQVA 627

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P  +LA QHY+  K   +   + V+ ++        ++ L  +   +  I+IGTH L
Sbjct: 628 VLVPTTVLAYQHYQTFKNRLKGMPVRVDYLSRARSAKQTKQVLTDLEDDKIDILIGTHKL 687

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
              S++++ L L+I+DE+ +FGV  + KL +  T    L M+ATPIPRTL  + +G  D+
Sbjct: 688 LGKSVKWHDLGLLIIDEEQKFGVSTKEKLRKMKTNVDTLTMSATPIPRTLQFSLMGARDM 747

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S I   P  R PI T +   +  + + + +   +S   + Y++  +I   +E        
Sbjct: 748 SIIRTPPPNRYPIHTELATFSH-EVIADAINFEMSRNGQVYFVHDRINGLQEIANLIH-- 804

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                       +AI HG+M     E V+  F N    +L++TT++E GID+ +A+ +II
Sbjct: 805 -----KYVPDCRVAIGHGQMPPDRLEKVLMGFMNYDYDVLLSTTIVENGIDISNANTMII 859

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLI 620
            +A  FGL+ LHQ+RGRVGR    + C LL  P   L+  +  RL  L+N      GF +
Sbjct: 860 NDAHRFGLSDLHQMRGRVGRSNRKAFCYLLAPPKTSLTPEARRRLEALENFSELGSGFDL 919

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           A +DL  R  G +LG +QSG  + L    E +  +L  A  + K
Sbjct: 920 AMQDLDIRGAGNLLGAEQSGFMEDL--GYETYQKILSQAVTELK 961


>gi|326692375|ref|ZP_08229380.1| transcription-repair coupling factor [Leuconostoc argentinum KCTC
            3773]
          Length = 1176

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 233/447 (52%), Gaps = 18/447 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW    R+  A  E +A  +  L  +++ +   G     +     K      +  T  Q 
Sbjct: 568  EWAKTKRQVAAKIEDIADDLLELYAQREAE--AGYAFPPDDTAQLKFDTAFGYPETPDQI 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +I++I  DM +   M R+L GDVG GKT VAL A+  A  AG Q   +AP  IL QQHY
Sbjct: 626  RSIEEIKADMQKPRPMDRLLVGDVGFGKTEVALRAIFKAAHAGKQVAFLAPTTILVQQHY 685

Query: 339  EF-IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E  + +++   ++ + +++     A  +  + ++   +  I++GTH L    + +  L L
Sbjct: 686  ETMLARFSAFPELKIGVLSRFQTPAQNKAVIAKLKAHEIDIVVGTHRLLSQDVTFADLGL 745

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +++DE+ RFGV+ + +L Q   +  VL +TATPIPRTL +  +G  D+S I   PA R P
Sbjct: 746  LVIDEEQRFGVKHKERLKQLRHSVDVLTLTATPIPRTLNMAMVGARDLSVIETPPANRFP 805

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            I+T ++  +    V   ++  L+   + +++  ++ +      +        L    ++ 
Sbjct: 806  IQTYVLEADWT-IVRNAIEKELARDGQVFYLHNRVADLDRVVSQ-----IEELVP--SAR 857

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            +A IHG+MS+   ES++  F NG   +L+ TT+IE G+D+ +A+ +I+ENA+H GL+QL+
Sbjct: 858  VAAIHGQMSETQLESILFDFLNGNYDVLVTTTIIETGVDIPNANTLIVENADHMGLSQLY 917

Query: 578  QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR   ++     Y      S+ +  RL+ +++      GF IA  DL  R  G+
Sbjct: 918  QLRGRVGRSTRLAYAYFTYPFSRTPSEEAEKRLAAIRDFTELGSGFRIAMRDLSIRGAGD 977

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +LG +Q G    +     ++  LL+ A
Sbjct: 978  LLGKQQHGFIDSVGYD--MYTQLLKEA 1002


>gi|314929229|gb|EFS93060.1| transcription-repair coupling factor [Propionibacterium acnes
            HL044PA1]
          Length = 1194

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 232/489 (47%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 589  DWRKRKARARKAVREIAAELIKLYAARQA--TKGHAFGPDTAWQRELEDAFAYVETPDQL 646

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 647  TTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 706

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++     A  R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 707  QTFTERYAGFPVKVAALSRFQTDAEAREVLEGLKRGTVDVVVGTHRLLAKEVEFKDLGLV 766

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 767  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 826

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +++  +        L     + I
Sbjct: 827  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAVK-----LRELVPE--ARI 878

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 879  VTAHGQMNEKQLERIMVDFWERRADVLVCTTIVESGIDIPTANTLLIDRADLMGLSQLHQ 938

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR         LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 939  LRGRVGRSRARGYAYFLYPADKPLSQTAHDRLATMAAHTDLGAGMAIAMKDLEIRGAGNL 998

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 999  LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDGTAADEPEMRIELPVDANLPVEYVETE 1056

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1057 RLRLEMYKR 1065


>gi|302336465|ref|YP_003801672.1| transcription-repair coupling factor [Olsenella uli DSM 7084]
 gi|301320305|gb|ADK68792.1| transcription-repair coupling factor [Olsenella uli DSM 7084]
          Length = 1171

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 141/451 (31%), Positives = 224/451 (49%), Gaps = 17/451 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W+    +  A  + LA  +  L  R+      G     +    Q++  + P+  T  Q 
Sbjct: 579  DWSRATGKARASAKRLAFDLVDLYTRRSA--VSGHAFAPDTPAQQEMESSFPYEVTIDQA 636

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI DI  DM     M R+L GDVG GKT VAL A     +   Q +++ P  ILAQQH+
Sbjct: 637  RAIADIKADMEASKPMDRLLCGDVGFGKTEVALRAAFKCCQDARQVMVLCPTTILAQQHF 696

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E          + V++++  +  A +R+ALE  A G   ++IGTH L    +  + L LV
Sbjct: 697  ETFFSRFVPFDLSVKVLSRFVTPAQQRRALEGFAKGTVDVLIGTHRLLSSDVNPHDLGLV 756

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGVQ + +L        VL ++ATPIPRT+ +   G  D+S I   P GR P+
Sbjct: 757  IIDEEQRFGVQHKEQLKNMREQVDVLTLSATPIPRTMQMAMSGVRDMSLILTPPPGRLPV 816

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +  +   +  D V E ++  L    + Y++  ++   ++      VER         + +
Sbjct: 817  RVTVGEWD-PDLVSEAIRAELGREGQVYYVSNRVTTIED-----AVERVRE--AAPEARV 868

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS    E +M +F      +L+ATT+IE GID    + +IIE+++  GLAQL+Q
Sbjct: 869  GVAHGKMSATQAEDIMLAFSEHEIDVLVATTIIESGIDNPHTNTLIIEDSQRLGLAQLYQ 928

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            L+GRVGRG   +    ++    PL+  +  RL+ +   +D   G  IA  DL+ R  G +
Sbjct: 929  LKGRVGRGRTQAYAYFMFPGELPLTPEATDRLTAINEYQDLGSGMRIAMRDLEIRGAGSL 988

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            +G +Q G         +L   +L  A  +A+
Sbjct: 989  MGAEQHG--NLSSVGFDLFTQMLGEAVSEAR 1017


>gi|307707904|ref|ZP_07644379.1| transcription-repair coupling factor [Streptococcus mitis NCTC
           12261]
 gi|307615969|gb|EFN95167.1| transcription-repair coupling factor [Streptococcus mitis NCTC
           12261]
          Length = 1167

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 145/451 (32%), Positives = 232/451 (51%), Gaps = 17/451 (3%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + + +         P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDEEQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQDSQPMDRLLVGDVGFGKTEVAMRAAFKAVNDNKQVVVLVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTETLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++   +   +        L   
Sbjct: 794 NRYPVQTYVLEKND-SVIRDSVLREMERGGQVYYLYNKVDTIDQKVSK-----LQELIPE 847

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H GL
Sbjct: 848 --ASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL 905

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQR 628
           + L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  R
Sbjct: 906 STLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSIR 965

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG  QSG         EL+  LLE A
Sbjct: 966 GAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|255019853|ref|ZP_05291929.1| Transcription-repair coupling factor [Acidithiobacillus caldus ATCC
            51756]
 gi|254970782|gb|EET28268.1| Transcription-repair coupling factor [Acidithiobacillus caldus ATCC
            51756]
          Length = 1149

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 147/439 (33%), Positives = 228/439 (51%), Gaps = 18/439 (4%)

Query: 255  INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
                 +     +   PF  T  Q++AI  ++ DM++   M R++ GDVG GKT VAL A 
Sbjct: 585  FPPPDERYWDFVSRFPFEETPDQQAAIDAVIADMTRTQPMDRLICGDVGFGKTEVALRAA 644

Query: 315  AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
              A  +G Q  ++ P  +LAQQH+E  +       I V +++       RR+ L ++A G
Sbjct: 645  FLAAASGAQVAVLVPTTLLAQQHFENFRDRFAGLPIRVTVLSRFQNARERREILAQLASG 704

Query: 375  QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
               I+IGTH L    +++  L L+I+DE+HRFGV+Q+ ++    +   VL +TATPIPRT
Sbjct: 705  AIRIVIGTHRLLSRDVRFCDLGLLILDEEHRFGVRQKEQIKALRSEVDVLTLTATPIPRT 764

Query: 435  LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            L L+  G  D+S I   P  R+P++T +   +  D V E  +  L  G + Y++  ++ +
Sbjct: 765  LNLSLAGLRDLSIIATPPERRQPVRTFVQVFSE-DLVREACQRELHRGGQIYYLHNEVRD 823

Query: 495  KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             +             L       +A  HG+M + + ESVM  F +    +L+ TT+IE G
Sbjct: 824  IE-----RSAATLRRLVPEARLRVA--HGQMPEAELESVMLDFYHQRFDILLCTTIIESG 876

Query: 555  IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK 612
            ID   A+ ++I+ A+ FGLAQLHQLRGRVGR  + + C L    P  +++++  RL  ++
Sbjct: 877  IDNPSANTMLIDRADRFGLAQLHQLRGRVGRSHQRAYCYLFTPDPRAMTEDARRRLDAIQ 936

Query: 613  NTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            + ED   GF +A  DL+ R  GE+LG  QSG  +       L    L  A    +    +
Sbjct: 937  SLEDLGVGFALASHDLEIRGAGELLGDAQSGHME--EVGFTLFMEWLNEAVDAIRA--GR 992

Query: 670  DPD-LTSVRGQSIRILLYL 687
            DP  L   R +  RI L +
Sbjct: 993  DPQSLAESRAEGPRIHLNI 1011


>gi|257092702|ref|YP_003166343.1| transcription-repair coupling factor [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257045226|gb|ACV34414.1| transcription-repair coupling factor [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
          Length = 1141

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 147/479 (30%), Positives = 221/479 (46%), Gaps = 19/479 (3%)

Query: 213  RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +W    R         A ++  L   +  ++                     F 
Sbjct: 541  HTLGSPQWEKAKRRAALQARDTAAELLALYALRAARQGHACQFKAHD--YDAFADGFGFE 598

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
             T  Q +AI  +++DM     M R++ GDVG GKT VAL A   AV  G Q  ++ P  +
Sbjct: 599  ETADQAAAINAVIEDMQSGRPMDRLVCGDVGFGKTEVALRAAFCAVAGGRQVAVLCPTTL 658

Query: 333  LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
            L +QH++       +  + +  ++         +AL  +A G+  IIIGTH L Q  +Q+
Sbjct: 659  LCEQHHQTFSDRFADWPVSIAELSRFKTAREASQALRELADGKLDIIIGTHRLLQKDVQF 718

Query: 393  YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +L LV++DE+HRFGV+Q+  L        VL +TATPIPRTL ++  G  D S I   P
Sbjct: 719  SRLGLVVIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMSLEGLRDFSVIATAP 778

Query: 453  AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              R  IKT +   +    + E L      G + Y++  +++  +     ++ ++   L  
Sbjct: 779  QKRLAIKTFVTRFSD-GIIREALLREFKRGGQVYFLHNEVDTIE-----NMRDKLGKLLP 832

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               + I + HG++ + D E VM  F      +L+ TT+IE GID   A+ III  AE FG
Sbjct: 833  E--ARIVVGHGQLKERDLERVMRDFTQRRANVLLCTTIIETGIDNPHANTIIINRAEKFG 890

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
            LAQLHQLRGRVGR    +   LL H    L+K +  RL  ++       GF +A  DL+ 
Sbjct: 891  LAQLHQLRGRVGRSHHQAYAYLLTHDETALNKQARQRLEAIQMMDELGAGFYLAMHDLEI 950

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R  GE+LG  QSG  +       L   +L  A    K    ++PD       +  I L+
Sbjct: 951  RGAGEVLGDSQSG--EMQEVGFNLFTEMLNRAVAALKQ--GKEPDPMQPLAIATEINLH 1005


>gi|325265261|ref|ZP_08131986.1| transcription-repair coupling factor [Clostridium sp. D5]
 gi|324029440|gb|EGB90730.1| transcription-repair coupling factor [Clostridium sp. D5]
          Length = 1119

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 237/457 (51%), Gaps = 17/457 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +WT    +       +A  +  L   +Q     G     +    ++     PF  T+ Q 
Sbjct: 520 QWTKTKSQVRRAVRAVAKDLVELYAARQE--SAGFVYEPDTVWQKEFEEMFPFEETEDQL 577

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI D  +DM  K  M R++ GDVG GKT +A+ A   AV+ G Q V + P  ILAQQHY
Sbjct: 578 QAIADTKRDMESKKIMDRLICGDVGYGKTEIAIRAAFKAVQEGKQVVYLVPTTILAQQHY 637

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +  ++  +  +++      A ++K +E +  G   I+IGTH +    +Q+  L L+
Sbjct: 638 NTFVQRMKDFPVRADLLCRFRTSAQQKKTVEDLKKGLVDIVIGTHRVLSKDVQFKDLGLL 697

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + K+ +      VL +TATPIPRTL ++ +G  D+S + E P  R PI
Sbjct: 698 IIDEEQRFGVTHKEKIKKLRENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRMPI 757

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  N  + V E ++  LS   + Y++  ++ +  +        R   L     +++
Sbjct: 758 QTYVMEYND-EMVREAIERELSRDGQVYYVYNRVSDIADVAG-----RIQKLVPD--AAV 809

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           +  HG+M++   E++M  F NG   +L++TT+IE G+D+ + + +II +A+  GL+QL+Q
Sbjct: 810 SFAHGQMNERQLENIMYDFINGDIDVLVSTTIIETGLDISNVNTMIIHDADRLGLSQLYQ 869

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGR   ++   LLY     L + +  RL+ ++   D   GF IA  DL+ R  G +
Sbjct: 870 LRGRVGRSSRMAYAFLLYRKDKLLKEVAEKRLAAIREFTDLGSGFKIAMRDLEIRGAGNL 929

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           LG +Q G  + +     L+  +L  A K  K  L +D
Sbjct: 930 LGEEQHGHMEAVGYD--LYCKMLNEAVKQFKGELEED 964


>gi|72382209|ref|YP_291564.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
            NATL2A]
 gi|72002059|gb|AAZ57861.1| transcription-repair coupling factor [Prochlorococcus marinus str.
            NATL2A]
          Length = 1167

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 130/424 (30%), Positives = 223/424 (52%), Gaps = 17/424 (4%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            + +  +  KE G     +G    ++  + P++ T  Q +A   +  DM  +  M R++ G
Sbjct: 589  IKLYAERSKEKGYKFPCDGPWQNELEDSFPYALTPDQATATSQVKSDMESEKPMDRLVCG 648

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VA+ A+  A+ +G Q  ++AP  +L+QQH+  I        I V ++     
Sbjct: 649  DVGFGKTEVAIRAIFKAITSGKQIALLAPTTVLSQQHWRTISDRFAPYPIKVSLLNRFKT 708

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
             + ++  +  +  GQ   ++GTH L    + Y  L L+++DE+ RFGV Q+ K+ +   +
Sbjct: 709  NSEKKHIVSGLKDGQIDAVVGTHQLLNKKLVYKDLGLLVIDEEQRFGVNQKEKIKELKKS 768

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL ++ATPIPRTL ++  G  ++S IT  P  R+PIKT + P++  + +   +   + 
Sbjct: 769  VDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLAPLDN-EIIRSAISQEID 827

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
             G + ++I P+I        + + +    L     +  + I HG+M +   E+ M +F  
Sbjct: 828  RGGQIFYIVPRI--------KGIEDVAEKLKIMIPNVKLLIAHGQMEEGALENAMLAFNA 879

Query: 540  GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--H 597
            G   +L+ TT++E G+D+   + I+IE++  FGL+QL+QLRGRVGR    +   L Y   
Sbjct: 880  GEADILLCTTIVESGLDIPRVNTILIEDSHKFGLSQLYQLRGRVGRSGVQAHAWLFYPSD 939

Query: 598  PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
              L++ S  RL  +K   D   G+ +A  D++ R  G ILGI+QSG  + +     L+  
Sbjct: 940  EKLNETSRQRLKAIKEFSDLGSGYQLAMRDMEIRGVGNILGIEQSGQMETIGFD--LYME 997

Query: 655  LLEI 658
            LL+ 
Sbjct: 998  LLQE 1001


>gi|317488238|ref|ZP_07946807.1| transcription-repair coupling factor [Eggerthella sp. 1_3_56FAA]
 gi|316912680|gb|EFV34220.1| transcription-repair coupling factor [Eggerthella sp. 1_3_56FAA]
          Length = 1022

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 133/452 (29%), Positives = 223/452 (49%), Gaps = 17/452 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W+    +     + LA  +  +  R+      G     +    +++    P+  T  Q 
Sbjct: 427 DWSRALAKARKATKKLAFDLVDVYARRAS--VQGYRFGPDTAAQREMEEAFPYQETPDQL 484

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI D+  DM     M R++ GDVG GKT VAL A   A +   Q +++ P  ILAQQHY
Sbjct: 485 AAIADVKADMQSAKPMDRLVCGDVGFGKTEVALRAAFKATQDSKQVMVLCPTTILAQQHY 544

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              K+  +   + VE+++     A +  AL+    G   +++GTH L    +  + L LV
Sbjct: 545 TNFKERCEPFGVRVEVLSRFRTPAQQAAALKGFQEGDVDVLVGTHRLLSRDVNPHDLGLV 604

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV  + ++     +  VL ++ATPIPRT+ ++  G  D+S I   P  R+P+
Sbjct: 605 IIDEEQRFGVGHKEQMKNLRESIDVLTLSATPIPRTMQMSLSGVRDMSLILTPPDERRPV 664

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +  +   +  D V   ++  L+ G + Y++  ++   +E+  R              + +
Sbjct: 665 EVHVGEWD-PDVVSGAIRRELARGGQVYYVSNRVRSMEEAVRRVT-------AAAGEARV 716

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+MS    E VM+ F  G   +L+ATT+IE GID    + +IIE+++ +GLAQ++Q
Sbjct: 717 GVAHGQMSKEQLERVMEDFSAGELDVLVATTIIESGIDNPHTNTLIIEDSQRYGLAQMYQ 776

Query: 579 LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           L+GRVGR    +    ++  H  L++ +  RL+ L    D   G  IA  DL+ R  G +
Sbjct: 777 LKGRVGRSCTQAYAYFMFPEHMELTEEAAARLTALNEHTDLGSGMRIAMRDLEIRGAGSL 836

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           LG +QSG         +L   +L  A    + 
Sbjct: 837 LGAEQSGNMS--AVGFDLFAQMLNQAVSATRE 866


>gi|328952684|ref|YP_004370018.1| transcription-repair coupling factor [Desulfobacca acetoxidans DSM
           11109]
 gi|328453008|gb|AEB08837.1| transcription-repair coupling factor [Desulfobacca acetoxidans DSM
           11109]
          Length = 1168

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 140/428 (32%), Positives = 210/428 (49%), Gaps = 15/428 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    +      E +A ++  L      +   G   +      ++      F  T  Q  
Sbjct: 559 WEKTKKRVRQAVEKIARELVELYA--ARRVLPGHHFSPPDPALREFEATFDFEETPDQLE 616

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+D+L+DM+    M R++ GDVG GKT VAL A   A   G Q   + P  +LA+QH E
Sbjct: 617 AIQDVLEDMASDRVMDRLICGDVGYGKTEVALRAAFKAAMDGKQVAFLVPTTVLAEQHLE 676

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  ++  + +  ++       +++ L  ++ G+  IIIGTH L Q  + + +L L+I
Sbjct: 677 TFKRRFRSYPLEIRALSRFRAFKEQKRILADLSAGKVDIIIGTHRLLQKDVHFKELGLII 736

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ RFGV  + KL +      VL ++ATPIPRTL +   G  ++S I   PA R+ IK
Sbjct: 737 VDEEQRFGVSHKEKLKKFRQTVDVLTLSATPIPRTLQMAMTGIREMSIINTAPAERQSIK 796

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T ++  N    + E ++  L  G + +++  ++      N  S V     L     + I 
Sbjct: 797 TYLVRPND-SIICEAVRRELERGGQVFFVHNRV-----HNLPSYVAYLKRLVPK--ARIG 848

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M + D E VM  F      +L+ T +IE G+D+  A+ III  A   GLAQ++QL
Sbjct: 849 MAHGQMPEKDLEHVMWQFWRREIDVLVCTAIIESGLDIPAANTIIINRAHALGLAQIYQL 908

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGRG E +   LL      L+  +  RL  L        GF IA  DL+ R  G IL
Sbjct: 909 RGRVGRGREQAYAYLLVPEEEHLNPEAQKRLKALMEFTELGSGFKIALHDLQIRGAGNIL 968

Query: 635 GIKQSGMP 642
           G  QSG  
Sbjct: 969 GAAQSGHI 976


>gi|281420665|ref|ZP_06251664.1| transcription-repair coupling factor [Prevotella copri DSM 18205]
 gi|281405438|gb|EFB36118.1| transcription-repair coupling factor [Prevotella copri DSM 18205]
          Length = 1137

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 131/450 (29%), Positives = 225/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +     + +A  +  L  +++ +   G   + +  +   +  +  +  T  Q  
Sbjct: 519 WDKLKDKAKKRIKDIARDLIKLYAQRRRE--KGFAFSADNYLQHTLEASFLYEDTPDQNK 576

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +++ +DM     M R++ GDVG GKT VA+ A   A     Q  ++ P  +LA QHY+
Sbjct: 577 ATQEVKKDMESGRPMDRLVCGDVGFGKTEVAIRAAFKAACDSKQVAVLVPTTVLAFQHYQ 636

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +   + V+ ++        R+ L+ +  G+  I+IGTH L   +++++ L L++
Sbjct: 637 TFKKRLEGMPVRVDYLSRARTTKETREVLDALKEGKIDILIGTHKLISKTVKWHDLGLLV 696

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L M+ATPIPRTL  + +G  D+S +   P  R PI 
Sbjct: 697 IDEEQKFGVSTKEKLRQLKVNVDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIH 756

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T ++  +  + + + +   +S   + Y++C +I +  E                    +A
Sbjct: 757 TELVTFSS-EVICDAINFEMSRNGQVYFVCDRISKLPELKMLIE-------KHIPDCRVA 808

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   D E ++  F N    +L++TT++E GID+ +A+ II+ +A HFGL+ LHQ+
Sbjct: 809 IGHGQMKPEDLEKIIMGFINYDYDVLLSTTIVENGIDISNANTIIVSDAHHFGLSDLHQM 868

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C L+  P   L+  +  RL  L+       GF +A +DL  R  G +L
Sbjct: 869 RGRVGRSNKKAFCYLMAPPKSALTPEARRRLEALETFSELGSGFNLAMQDLDIRGAGNLL 928

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG  + L    E +  +L  A  + K
Sbjct: 929 GSEQSGFMEDL--GYETYQKILSQAVTELK 956


>gi|325830839|ref|ZP_08164223.1| transcription-repair coupling factor [Eggerthella sp. HGA1]
 gi|325487246|gb|EGC89689.1| transcription-repair coupling factor [Eggerthella sp. HGA1]
          Length = 1161

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 133/452 (29%), Positives = 223/452 (49%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W+    +     + LA  +  +  R+      G     +    +++    P+  T  Q 
Sbjct: 566  DWSRALAKARKATKKLAFDLVDVYARRAS--VQGYRFGSDTAAQREMEEAFPYQETPDQL 623

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI D+  DM     M R++ GDVG GKT VAL A   A +   Q +++ P  ILAQQHY
Sbjct: 624  AAIADVKADMQSAKPMDRLVCGDVGFGKTEVALRAAFKATQDSKQVMVLCPTTILAQQHY 683

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K+  +   + VE+++     A +  AL+    G   +++GTH L    +  + L LV
Sbjct: 684  TNFKERCEPFGVRVEVLSRFRTPAQQAAALKGFQEGDVDVLVGTHRLLSRDVNPHDLGLV 743

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + ++     +  VL ++ATPIPRT+ ++  G  D+S I   P  R+P+
Sbjct: 744  IIDEEQRFGVGHKEQMKNLRESIDVLTLSATPIPRTMQMSLSGVRDMSLILTPPDERRPV 803

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +  +   +  D V   ++  L+ G + Y++  ++   +E+  R              + +
Sbjct: 804  EVHVGEWD-PDVVSGAIRRELARGGQVYYVSNRVRSMEEAVRRVT-------AAAGEARV 855

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS    E VM+ F  G   +L+ATT+IE GID    + +IIE+++ +GLAQ++Q
Sbjct: 856  GVAHGQMSKEQLERVMEDFSAGELDVLVATTIIESGIDNPHTNTLIIEDSQRYGLAQMYQ 915

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            L+GRVGR    +    ++  H  L++ +  RL+ L    D   G  IA  DL+ R  G +
Sbjct: 916  LKGRVGRSCTQAYAYFMFPEHMELTEEAAARLTALNEHTDLGSGMRIAMRDLEIRGAGSL 975

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG         +L   +L  A    + 
Sbjct: 976  LGAEQSGNMS--AVGFDLFAQMLNQAVSATRE 1005


>gi|282881355|ref|ZP_06290034.1| transcription-repair coupling factor [Prevotella timonensis CRIS
           5C-B1]
 gi|281304761|gb|EFA96842.1| transcription-repair coupling factor [Prevotella timonensis CRIS
           5C-B1]
          Length = 1164

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 223/450 (49%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +     + +A  +  L  ++Q   E G   +V+  + Q++  +  +  T  Q  
Sbjct: 550 WERLKEKAKKRIKDIARDLIKLYAKRQ--HEKGFSFSVDTFMQQELEASFLYEDTPDQVK 607

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  ++  DM +   M R++ GDVG GKT VA+ A   A     Q  ++ P  +LA QHY+
Sbjct: 608 ATAEVKGDMEKARPMDRLVCGDVGFGKTEVAIRAAFKAACDSKQVAVLVPTTVLAFQHYK 667

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  +   + V+ ++        R+ LE +A G+  IIIGTH L   S++++ L L+I
Sbjct: 668 TFKERLRGMPVNVDYLSRARTAKQSRQVLEDLAAGRIDIIIGTHKLLGKSVEWHDLGLLI 727

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL +  T    L M+ATPIPRTL  + +G  D+S +   P  R PI 
Sbjct: 728 IDEEQKFGVSTKEKLRKLKTNVDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIH 787

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T I      + + + +   +S   + Y++  +I    E            L       +A
Sbjct: 788 TEIGTFGH-EIITDAINFEMSRNGQVYFVNDRISTLPEIEKVI-------LKYVPDCRVA 839

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E+V+  F N    +L++T++IE GID+ +A+ III NA   GL+ LHQ+
Sbjct: 840 IGHGQMPPEKLENVLIDFMNHDYDVLLSTSIIENGIDISNANTIIINNAHRIGLSDLHQM 899

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR    + C LL  P   L+  +  RL  L+       GF IA +DL  R  G +L
Sbjct: 900 RGRVGRSNRKAFCYLLAPPKSVLTPEARQRLEALETFSELGSGFNIAMQDLDIRGAGNLL 959

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG  + L    E +  +L  A  + +
Sbjct: 960 GAEQSGFMEDL--GYETYQKILSQAVTELR 987


>gi|33865711|ref|NP_897270.1| transcriptional-repair coupling factor [Synechococcus sp. WH 8102]
 gi|33632881|emb|CAE07692.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 8102]
          Length = 1192

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 141/463 (30%), Positives = 234/463 (50%), Gaps = 20/463 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            WT            +A  +  L    +  +  G     +G    ++  + P+ PT  Q  
Sbjct: 571  WTKAKERAKKAVRKVAMDLVKLYA--ERHQANGFAFPSDGPWQNELEESFPYEPTPDQLK 628

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            A  D+ +DM +   M R++ GDVG GKT VA+ A+  A+ AG Q  ++AP  +LAQQH+ 
Sbjct: 629  ATADVKRDMEKAEPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWR 688

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             + +      I V ++      + R+  LE +  G    ++GTH L      + +L L++
Sbjct: 689  TLSERFAPYPIKVALLNRFRTASERKTILEGLKGGTIDAVVGTHQLLGKGASFQQLGLLV 748

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  ++S IT  P  R+PIK
Sbjct: 749  VDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIK 808

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T +  ++  + V   ++  L  G + +++ P++E  +        +    L E      +
Sbjct: 809  THLAALD-PEAVRSAIRQELDRGGQVFYVVPRVEGIE--------DVAAGLREMLPGLKL 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++ + ES M +F  G   +++ TT++E G+D+   + I+IE+A  FGLAQL+Q
Sbjct: 860  LVAHGQMAEGELESAMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFGLAQLYQ 919

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L Y  +  LS N+  RL  ++       G+ +A  D++ R  G +
Sbjct: 920  LRGRVGRSGIQAHAWLFYPGNGSLSDNARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNL 979

Query: 634  LGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHILTQDPDL 673
            LG++QSG  + +        L +SL EI  +D   +     DL
Sbjct: 980  LGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPSVDDTQVDL 1022


>gi|325106020|ref|YP_004275674.1| transcription-repair coupling factor [Pedobacter saltans DSM 12145]
 gi|324974868|gb|ADY53852.1| transcription-repair coupling factor [Pedobacter saltans DSM 12145]
          Length = 1116

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 136/438 (31%), Positives = 224/438 (51%), Gaps = 16/438 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           + +    K ++G   + +  +  ++  +  +  T  QE A  D+ +DM  ++ M R++ G
Sbjct: 528 IKLYAVRKSQVGFAFSPDTYLQNELEASFIYEDTPDQEKATADVKKDMESEHPMDRLVCG 587

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VA+ A   A   G Q  I+ P  ILA QHY+   +  ++  + ++ I     
Sbjct: 588 DVGFGKTEVAIRAAFKAATEGKQVAILVPTTILAMQHYKTFSERLKDFPVRIDYINRFKT 647

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               +  LE +  G+  I+IGTH L    +++  L L+I+DE+ +FGV  + KL Q    
Sbjct: 648 TKQVKGTLEALKEGKVEILIGTHRLVAKDVKFKDLGLLIIDEEQKFGVSVKEKLKQFRAN 707

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              L +TATPIPRTL  + +G  D+S I   P  R+P+ T +   N    + E ++  L 
Sbjct: 708 VDTLTLTATPIPRTLHFSLMGARDLSIIQTPPPNRQPVDTELHVFNE-KLIKEAVEFELD 766

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
              + ++I  ++     ++ R +      L     + IAI HG++     E +M  F  G
Sbjct: 767 REGQVFFIHNRV-----ADLRQLGGLIQKLVPK--ARIAIAHGQLEGDKLEDIMLDFIEG 819

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-- 598
              +L+ATT+IE G+DV +A+ I+I +A  FGL+ LHQ+RGRVGR  + + C LL  P  
Sbjct: 820 KYDVLVATTIIEAGLDVPNANTILINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLS 879

Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM---PKFLIAQPELH 652
            L+  +  RLS ++   D   GF +A  DL  R  G +LG +QSG      F +    L 
Sbjct: 880 TLTPEARKRLSAIEEFSDLGSGFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFDMYHKILD 939

Query: 653 DSLLEIARKDAKHILTQD 670
           +++ E+  ++ K +   +
Sbjct: 940 EAIQELKDEEFKGLFADE 957


>gi|289166915|ref|YP_003445182.1| transcription-repair coupling factor [Streptococcus mitis B6]
 gi|288906480|emb|CBJ21310.1| transcription-repair coupling factor [Streptococcus mitis B6]
          Length = 1169

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 144/452 (31%), Positives = 234/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + + +         P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGYAFSADDEDQHAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQSSQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFKSKKEQTETLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++           ++ + L E 
Sbjct: 794 NRYPVQTYVLEKNE-SVIRDAVLREMERGGQVYYLYNKVDTID--------QKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +S+  +HGRMS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + +ENA++ G
Sbjct: 845 IPEASVGYVHGRMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|78212830|ref|YP_381609.1| transcription-repair coupling factor [Synechococcus sp. CC9605]
 gi|78197289|gb|ABB35054.1| transcription-repair coupling factor [Synechococcus sp. CC9605]
          Length = 1192

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 138/463 (29%), Positives = 234/463 (50%), Gaps = 20/463 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W             +A  +  L   +Q  +  G     +G    ++  + P+ PT  Q  
Sbjct: 571  WNKAKERAKKAVRKVALDLVKLYAERQ--QAAGFAFPTDGPWQVEMEESFPYDPTPDQLK 628

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            A  D+ +DM ++  M R++ GDVG GKT VA+ A+  A+ AG Q  ++AP  +LAQQH+ 
Sbjct: 629  ATADVKRDMERQEPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWR 688

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             + +      I V ++      + R+  L+ +  G    ++GTH L      + +L L++
Sbjct: 689  TLSERFAPYPIKVALLNRFRTASERKSILDGLKQGTIDAVVGTHQLLSKGASFQELGLLV 748

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  ++S IT  P  R+PIK
Sbjct: 749  VDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIK 808

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T +  ++  + +   ++  L  G + +++ P++E  +        E    L E      +
Sbjct: 809  THLASLD-PEAMRSAIRQELDRGGQVFYVVPRVEGIE--------EVAAGLREMLPGLKL 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++ + E+ M +F  G   +++ TT++E G+D+   + I+IE+A  FGLAQL+Q
Sbjct: 860  LVAHGQMAEGELENAMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFGLAQLYQ 919

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L Y  +  LS  +  RL  ++       G+ +A  D++ R  G +
Sbjct: 920  LRGRVGRSGIQAHAWLFYPGNASLSDTARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNL 979

Query: 634  LGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHILTQDPDL 673
            LG++QSG  + +        L +SL EI  +D   +     DL
Sbjct: 980  LGVQQSGQMETIGFDLYMEMLQESLAEIQGQDIPSVEDTQVDL 1022


>gi|254550004|ref|ZP_05140451.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            '98-R604 INH-RIF-EM']
          Length = 1234

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 236/474 (49%), Gaps = 17/474 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +AG++  L  ++Q     G   + +     ++     F+ T  Q 
Sbjct: 597  DWANTKTKARRAVREIAGELVSLYAKRQA--SPGHAFSPDTPWQAELEDAFGFTETVDQL 654

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA+QH 
Sbjct: 655  TAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAEQHL 714

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + ++ ++     A  R  ++ +A G   I+IGTH L Q  +++  L LV
Sbjct: 715  QTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLV 774

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 775  VVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 834

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   ++   L+  L    +A+++  ++             R   L     + +
Sbjct: 835  LTYVGPHDD-KQIAAALRRELLRDGQAFYVHNRVSSIDA-----AAARVRELVPE--ARV 886

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E+ +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 887  VVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 946

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 947  LRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNV 1006

Query: 634  LGIKQSGMPKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LGI+QSG    +     +      LE  R   +         T+   + +RI L
Sbjct: 1007 LGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDL 1060


>gi|311745141|ref|ZP_07718926.1| transcription-repair coupling factor [Algoriphagus sp. PR1]
 gi|126577659|gb|EAZ81879.1| transcription-repair coupling factor [Algoriphagus sp. PR1]
          Length = 1117

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 129/454 (28%), Positives = 222/454 (48%), Gaps = 21/454 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW +  +      + +A  +  L  +++       P   +  +  ++  +  +  T  Q 
Sbjct: 509 EWDNKKKRVKIKVKDIAKDLIALYAKRRSANG--YPFTKDSVLQVELESSFIYEDTPDQA 566

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A +D+  DM +   M R++ GDVG GKT VA+ A   AV    Q  ++ P  ILA QHY
Sbjct: 567 LATEDVKADMEKSYPMDRLVCGDVGFGKTEVAIRAAFKAVNDRKQVAVLVPTTILAMQHY 626

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +   +  +N  + VE I         ++ + ++  G+  I++GTH +    I +  L L+
Sbjct: 627 QTFSERLENLPVKVEYINRFRTAKQIKEIISQVKSGEIDILVGTHKIVNKDIVFRDLGLL 686

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ +FGV+ + +L        VL +TATPIPRTL  + +G  D+S I   P  R+P+
Sbjct: 687 VIDEEQKFGVKVKDQLKNLRVNVDVLTLTATPIPRTLHFSLMGARDLSVIATPPPNRQPV 746

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TS 516
            T +    + + + + +   L  G + +++  ++ E          +   +L       +
Sbjct: 747 TTEVATF-QEETIRDAVAYELRRGGQVFFVHNRVGEI---------DSIANLIMKLVPDA 796

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +   HG+M     E +M  F +    +L++T +IE G+D+ +A+ III  A  FGL+ L
Sbjct: 797 RVIGAHGQMDGKKLEKIMVDFIHHEYDVLVSTNIIESGLDIPNANTIIINRAHMFGLSDL 856

Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           HQ+RGRVGR  + + C LL  P   L+  +  RL  L+      DGF +A +DL  R  G
Sbjct: 857 HQMRGRVGRSNKKAFCFLLTQPMSGLTPEARKRLQTLEEFSDLGDGFKVAMKDLDIRGAG 916

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            +LG +QSG    L    E++  +L+ A  + K 
Sbjct: 917 NLLGAEQSGFITDL--GFEMYHKILDEAVTELKE 948


>gi|145222538|ref|YP_001133216.1| transcription-repair coupling factor [Mycobacterium gilvum PYR-GCK]
 gi|145215024|gb|ABP44428.1| transcription-repair coupling factor [Mycobacterium gilvum PYR-GCK]
          Length = 1198

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 222/449 (49%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +A ++  L  ++Q     G   + +     ++     F+ T  Q 
Sbjct: 592  DWANTKTKARRAVREIAAELVTLYAKRQA--SPGHAFSPDTPWQVEMEDAFGFTETVDQL 649

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 650  TAITEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 709

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +          + V  ++     A  R  LE +  G   I+IGTH L Q  + +  L LV
Sbjct: 710  QTFTARMTGFPVTVRGLSRFTDPASSRATLEGMKDGSVDIVIGTHRLIQTGVTWKDLGLV 769

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 770  IVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 829

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   L+  +    +A++I  ++         S   +   L     + +
Sbjct: 830  LTYVGQHDD-KQVAAALRREMLRDGQAFYIHNRVRTID-----SAAAKIRQLVPE--ARV 881

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E  ++ F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 882  VVAHGQMPEEQLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 941

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 942  LRGRVGRSRERGYAYFLYPPEVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNV 1001

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +QSG         +L+  L+  A + 
Sbjct: 1002 LGAEQSGH--VAGVGFDLYVRLVGEAVEA 1028


>gi|167758784|ref|ZP_02430911.1| hypothetical protein CLOSCI_01126 [Clostridium scindens ATCC 35704]
 gi|167663524|gb|EDS07654.1| hypothetical protein CLOSCI_01126 [Clostridium scindens ATCC 35704]
          Length = 1114

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 178/660 (26%), Positives = 303/660 (45%), Gaps = 75/660 (11%)

Query: 23  YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF 82
            +  L++ +   N +     +L         DR       E++   I+T  G+++    +
Sbjct: 361 RAKRLAEDLRDYNLSSYYSDEL---------DR-------EVAPGEIMTAYGHVAYGYEY 404

Query: 83  QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142
            +      K  +   T       F +  +  K   +EGRKI    ++K            
Sbjct: 405 PM-----LKFTVISETDI-----FGKTKKKKKRKTYEGRKIQSFAELKVG---------D 445

Query: 143 YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK-IIVEALSRLPVLPEWIEK---DLLQKKS 198
           Y+ H +  +       +Y     + VD   K  +  + ++   L  +I     DL+QK  
Sbjct: 446 YVVHENHGLG------IYQGIEKIEVDKISKDYMKISYAQGGNL--YIPATQLDLIQKY- 496

Query: 199 FPSIAEAFNIIHNPR--KAKDFEWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255
                 A      P+  +    EWT    R R A  E+    + L   R++ +  +    
Sbjct: 497 ------ASADAKKPKLNRLGTQEWTKTKTRVRGAVREIAKDLVRLYAARQEQEGYVY--- 547

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
             +    ++     PF  T+ Q  AI+ + QDM     M R++ GDVG GKT +A+ A  
Sbjct: 548 GEDTVWQREFEEMFPFEETEDQLLAIEAVKQDMMSHKIMDRLICGDVGYGKTEIAIRAAF 607

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
            AV+   Q V + P  ILAQQHY    +  ++  + V+++      A ++K +E    G 
Sbjct: 608 KAVQEDKQVVYLVPTTILAQQHYNTFAQRMKDFPVRVDLMCRFRTPAQQKKTIEDTKKGL 667

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             I+IGTH +  D +++  L L+I+DE+ RFGVQ + K+ +      VL +TATPIPRTL
Sbjct: 668 VDIVIGTHRVLSDDLKFKDLGLLIIDEEQRFGVQHKEKIKKLKENVDVLTLTATPIPRTL 727

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            ++ +G  D+S + E P  R PI+T ++  N  + V E ++       + Y++  ++E+ 
Sbjct: 728 HMSLIGIRDMSVLEEAPNDRMPIQTYVMEYND-EMVREAIERESGRQGQVYYVYNRVEDI 786

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E            L      ++   HG+M +   E +M  F NG   +L++TT+IE G+
Sbjct: 787 AEITGH-----IQKLVPDV--TVEYAHGQMKEHQLERIMYDFINGEIDVLVSTTIIETGL 839

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN 613
           D+ + + +II +A+H GL+QL+QLRGRVGR   ++   LLY     L + +  RL+ ++ 
Sbjct: 840 DISNVNTMIIHDADHLGLSQLYQLRGRVGRSNRMAYAFLLYRRDKLLREVAEKRLAAIRE 899

Query: 614 TED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
             D   GF IA  DL+ R  G +LG +Q G  + +     L+  +L  A K  K  + ++
Sbjct: 900 FTDLGSGFKIAMRDLEIRGAGNLLGAEQHGHMEAVGYD--LYCKMLNEAVKHLKGEMEEE 957


>gi|317504984|ref|ZP_07962932.1| transcription-repair coupling factor [Prevotella salivae DSM 15606]
 gi|315663866|gb|EFV03585.1| transcription-repair coupling factor [Prevotella salivae DSM 15606]
          Length = 1153

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 154/577 (26%), Positives = 257/577 (44%), Gaps = 39/577 (6%)

Query: 101 ITLLFFYRKT---EMLKNVFFE-GRKITVTGKIKKLKNRIIMVHP-HYIFHNSQDVNFPL 155
           +   FF          K      G +    GK+      +  + P  +I H   D     
Sbjct: 422 LKCCFFTDHQIFDRYHKYNLKSDGARA---GKMALTMKELQEMEPGDFIVHV--DFGIGK 476

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
              +  +P G S     +II +   ++ V    + K  + K       E       P + 
Sbjct: 477 FGGLVRVPAGNSYQEMIRIIYQHNDKVDVSIHSLYK--ISKYRRSDTGE-------PPRL 527

Query: 216 KDFEWTSPAR---ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                 +  R   +     + +A  +  L    Q + E G   + +  +  ++  +  + 
Sbjct: 528 STLGTGAWDRLKEKTKKRIKDIARDLIKLYA--QRRHERGHAFSGDSYLQHELEASFLYE 585

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q  A +D+  DM  +  M R++ GDVG GKT VA+ A   +     Q  ++ P  +
Sbjct: 586 DTPDQSKATQDVKADMESQRPMDRLVCGDVGFGKTEVAVRAAFKSACDSKQVAVLVPTTV 645

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA QHY+  K   +   + V+ ++        ++ L  +  G+  I+IGTH L   ++++
Sbjct: 646 LAYQHYQTFKNRLKGMPVRVDYLSRARTAKQTKQVLTDLEDGKIDILIGTHKLLGKAVKW 705

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           + L L+I+DE+ +FGV  + KL +  T    L M+ATPIPRTL  + +G  D+S I   P
Sbjct: 706 HDLGLLIIDEEQKFGVSTKEKLRKLKTNVDTLTMSATPIPRTLQFSLMGARDMSIIRTPP 765

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             R PI T +   +  + + + +   +S   + Y++  +I   +E               
Sbjct: 766 PNRYPIHTELATFSH-EVIADAINFEMSRNGQVYFVHDRINGLQEIANLIH-------KY 817

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                IAI HG+M   + E V+  F N    +L++TT++E GID+ +A+ +II +A  FG
Sbjct: 818 VPDCRIAIGHGQMPPEELEKVLMGFMNYDYDVLLSTTIVENGIDISNANTMIINDAHRFG 877

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
           L+ LHQ+RGRVGR    + C LL  P   L+  +  RL  L+N      GF +A +DL  
Sbjct: 878 LSDLHQMRGRVGRSNRKAFCYLLAPPKSSLTPEARRRLEALENFSELGSGFNLAMQDLDI 937

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           R  G +LG +QSG  + L    E +  +L  A  + K
Sbjct: 938 RGAGNLLGAEQSGFMEDL--GYETYQKILNQAVTELK 972


>gi|222100017|ref|YP_002534585.1| Transcription-repair coupling factor [Thermotoga neapolitana DSM
           4359]
 gi|221572407|gb|ACM23219.1| Transcription-repair coupling factor [Thermotoga neapolitana DSM
           4359]
          Length = 895

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 141/443 (31%), Positives = 241/443 (54%), Gaps = 17/443 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++     E    ++  L ++++  +   +P   + ++ +K     P+  T  Q+ 
Sbjct: 321 WKRTLKKVREDIEKRVRELVELYLKREEVRGTLLP--GDPELEEKFAETFPYIETPDQQK 378

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            I+++L D+S +  M R+L GD G GKT VAL A   AV +G Q  ++ P  +LA+QHYE
Sbjct: 379 CIEEVLTDLSSEKPMDRLLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVLARQHYE 438

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  +   + VE++  +     R++ LE +  G+  ++IGTHAL  + +++  L LVI
Sbjct: 439 NFKERLEPFGVRVELLDSSRTLRERKEILEGLKKGEIDVVIGTHALLNERVEFSDLGLVI 498

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV+Q+ K  +   + +VL ++ATPIPRTL +   G  D+S I   P GRKP+ 
Sbjct: 499 IDEEQKFGVEQKEKFKKMRLSVNVLSLSATPIPRTLHMALSGMKDLSVINAPPPGRKPVH 558

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
             I   N  + V   +   ++ G +  ++  ++EE          E   +L   F    I
Sbjct: 559 VYIAEYNE-ELVKGAVVREVNRGGQVIYVHNRVEEL--------PEVLENLKRMFPELRI 609

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+ HG+MS    E V+  F +G   +L+ TT+IE G+D+ +A+ +I+++A  +GLAQL+Q
Sbjct: 610 AMAHGKMSRRVMEKVVHEFYSGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLAQLYQ 669

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
           LRGRVGR +  +    LY   + K++  RL VLK       G  IA +D++ R  G++LG
Sbjct: 670 LRGRVGRSDRRAFAYFLYPKGVPKSALERLRVLKAHTGPGSGLQIAMKDMEMRGIGDVLG 729

Query: 636 IKQSGMPKFLIAQPELHDSLLEI 658
           ++Q G    +    +L++ +L  
Sbjct: 730 LEQHG--NIISIGLKLYNEILRE 750


>gi|55980858|ref|YP_144155.1| transcription-repair coupling factor [Thermus thermophilus HB8]
 gi|55772271|dbj|BAD70712.1| transcription-repair coupling factor [Thermus thermophilus HB8]
          Length = 978

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 151/484 (31%), Positives = 244/484 (50%), Gaps = 18/484 (3%)

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            L  +  P +        +P +       EW           E LAG++ +L  ++  K 
Sbjct: 362 YLPVEQLPLLKRHPGTTDDPPELSSLGKNEWQRAKERARKDVEELAGRLLVLQAKR--KA 419

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
             G       +    + +  P+  T  Q+ A++++L+D+   + M R++ GDVG GKT V
Sbjct: 420 TPGRAFPPLPEWDPLVEKGFPYELTPDQKRALEEVLRDLESPHPMDRLVSGDVGFGKTEV 479

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           AL A    V  G Q   + P  +LA+QH +  ++  Q   + V +++   P       L+
Sbjct: 480 ALRAAHRVVGHGAQVAFLVPTTLLAEQHGKTFRERFQGLPVRVAVLSRFTPPKEEEAILK 539

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +A G   I+IGTH L Q+ +++  L L+IVDE+HRFGV Q+ ++ +       L ++AT
Sbjct: 540 GLAEGTVDIVIGTHRLLQEDVRFRDLGLLIVDEEHRFGVAQKERIRELKAEVDTLYLSAT 599

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL    +G  D+S I   P GRKPIKT + P + +  V E +   L  G K +++ 
Sbjct: 600 PIPRTLYSALVGLKDLSSIQTPPPGRKPIKTFLAPFDPL-LVREAILFELERGGKVFYVH 658

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            ++   +            +L     + I ++HG+M +   E  M  F  G   +L+ATT
Sbjct: 659 DRVASIEARRRF-----LENLVPE--ARIGVVHGQMPESLIEETMLLFAEGAYDVLLATT 711

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +IE G+DV +A+ I+IE A+  GLA L+QLRGRVGR EE +   L + P L++ +  RL+
Sbjct: 712 IIEAGLDVPEANTILIERADRLGLATLYQLRGRVGRREEEAYAYLFHPPRLTEAAEKRLA 771

Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            + +  D   G L+AE D++ R  G +LG +Q G         E++  LLE A +  K  
Sbjct: 772 AIADLSDLGSGHLLAERDMEIRGVGNLLGPEQHGHI--RALSLEVYTELLEEAIRKLKGE 829

Query: 667 LTQD 670
             ++
Sbjct: 830 AKEE 833


>gi|183984436|ref|YP_001852727.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
            marinum M]
 gi|183177762|gb|ACC42872.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
            marinum M]
          Length = 1222

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 226/449 (50%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT+   +       +AG++  L  ++Q     G     +     ++     F+ T  Q 
Sbjct: 591  DWTNTKTKARKAVREIAGELVALYAKRQA--SPGHAFAPDTPWQAEMEDAFGFTETVDQL 648

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 649  TAITEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 708

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +          + V+ ++     A  R  +E +A G   ++IGTH L Q  +++  L LV
Sbjct: 709  QTFTDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLV 768

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +    +   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 769  VVDEEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 828

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   L+  L    +A+++  ++    +        R   L     + +
Sbjct: 829  LTYVGPHDD-KQVAAALRRELLRDGQAFYVHNRVSSIDD-----TAARIRKLVPE--ARV 880

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E  +  F      +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 881  VVAHGQMPEDLLERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 940

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 941  LRGRVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNV 1000

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG++QSG         +L+  L+  A + 
Sbjct: 1001 LGVEQSGH--VAGVGFDLYVRLVGEAVEA 1027


>gi|149278180|ref|ZP_01884318.1| transcription-repair coupling factor [Pedobacter sp. BAL39]
 gi|149230946|gb|EDM36327.1| transcription-repair coupling factor [Pedobacter sp. BAL39]
          Length = 1114

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 142/461 (30%), Positives = 233/461 (50%), Gaps = 18/461 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           + +    K ++G   + +G +  ++  +  +  T  QE A  D+ +DM   + M R++ G
Sbjct: 529 IKLYALRKAQVGTAFDPDGYLETELEASFIYEDTPDQEKATSDVKKDMEAPHPMDRLVCG 588

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT +A+ A   AV  G QA ++ P  ILA QH++      ++    V+ I     
Sbjct: 589 DVGFGKTEIAIRAAFKAVANGKQAAVLVPTTILALQHFKTFSGRLKDFPCNVDYINRFKT 648

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               +  L  +A G+  IIIGTH L    +++  L ++I+DE+ +FGV  + KL      
Sbjct: 649 NKQIKDTLALLAEGKVDIIIGTHRLLSKDVKFKDLGIMIIDEEQKFGVTSKEKLRVLRAN 708

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVL 479
              L +TATPIPRTL  + +G  D+S ++  P  R+ + T +   N  D++I E ++  L
Sbjct: 709 VDTLTLTATPIPRTLHFSLMGARDLSIMSTPPPNRQAVNTELHVFN--DKLIQEAVQYEL 766

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G + ++I  ++ +  +           +L     + I I HG++     E VM  F N
Sbjct: 767 DRGGQVFFIHNRVNDLPQLGG-----LIQTLVPK--ARIGIAHGQLDGDALEDVMLDFIN 819

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
           G   +L+ATT+IE G+D+ +A+ III +A  FGL+ LHQ+RGRVGR  + + C LL  P 
Sbjct: 820 GEKDVLVATTIIEAGLDIPNANTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPL 879

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM---PKFLIAQPEL 651
             L+  +  RLS ++   D   GF IA  DL  R  G +LG +QSG      F +    L
Sbjct: 880 STLTSEARKRLSAIEEFSDLGSGFNIAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKIL 939

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
            +++ E+   + K +   +P    V    +   L L+  ++
Sbjct: 940 DEAIQELKDDEFKELFKNEPARPFVTFTQVDTDLELFIPDD 980


>gi|255529938|ref|YP_003090310.1| transcription-repair coupling factor [Pedobacter heparinus DSM
           2366]
 gi|255342922|gb|ACU02248.1| transcription-repair coupling factor [Pedobacter heparinus DSM
           2366]
          Length = 1113

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 139/440 (31%), Positives = 227/440 (51%), Gaps = 18/440 (4%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           + +    K ++G     +G +  ++  +  +  T  QE A  D+ +DM   + M R++ G
Sbjct: 529 IKLYALRKSQVGTAFAPDGYLETELEASFIYEDTPDQEKATSDVKKDMEAPHPMDRLVCG 588

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT +A+ A   AV  G QA ++ P  ILA QH++      ++    V+ I     
Sbjct: 589 DVGFGKTEIAIRAAFKAVANGKQAAVLVPTTILALQHFKTFTGRLKDFPCTVDYINRFKT 648

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               ++ L ++A G+  IIIGTH L    +++  L ++I+DE+ +FGV  + KL      
Sbjct: 649 SKQIKETLAKVAEGKVDIIIGTHRLLSKDVKFKDLGIMIIDEEQKFGVSSKEKLRALRVN 708

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVL 479
              L +TATPIPRTL  + +G  D+S ++  P  R+ + T +   N  D++I E ++  L
Sbjct: 709 VDTLTLTATPIPRTLHFSLMGARDLSIMSTPPPNRQAVNTELHVFN--DKLIQEAVQFEL 766

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G + ++I  ++ +  +           +L     + I I HG++     E VM  F N
Sbjct: 767 DRGGQVFFIHNRVHDLPQLGG-----LIQTLVPK--ARIGIAHGQLDGDQLEDVMLDFIN 819

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
           G   +L+ATT+IE G+D+ +A+ III +A  FGL+ LHQ+RGRVGR  + + C LL  P 
Sbjct: 820 GEKDVLVATTIIEAGLDIPNANTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPL 879

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM---PKFLIAQPEL 651
             L+  +  RLS ++   D   GF IA  DL  R  G +LG +QSG      F +    L
Sbjct: 880 STLTSEARKRLSAIEEFSDLGSGFNIAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKIL 939

Query: 652 HDSLLEIARKDAKHILTQDP 671
            +++ E+   + K +   +P
Sbjct: 940 DEAIQELKTDEFKDLFKDEP 959


>gi|33863047|ref|NP_894607.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9313]
 gi|33634964|emb|CAE20950.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9313]
          Length = 1193

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 137/483 (28%), Positives = 236/483 (48%), Gaps = 23/483 (4%)

Query: 187  EWIEKDL-LQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLL 242
            E+++  L +      S+    +   +P K        W             +A  +  L 
Sbjct: 535  EYLDGTLSVAADQLGSLGRYRSTSESPPKLNRMGGTTWQKVKERTRKLVRKVAMDLVKLY 594

Query: 243  MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
               +  +  G     +G    ++  + P+ PT  Q  A+ D+ +DM     M R++ GDV
Sbjct: 595  A--ERLQAPGYAFPPDGPWQIELEESFPYEPTPDQVKAVVDVKRDMEAAQPMDRLVCGDV 652

Query: 303  GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
            G GKT VA+ A+  A+ +G Q  ++AP  +LAQQH+  +        I V ++      +
Sbjct: 653  GFGKTEVAIRAIFKAITSGRQIAMLAPTTVLAQQHWRTLSDRFAPYPIKVALLNRFRTSS 712

Query: 363  HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
             R+  L  +  G    ++GTH L   +  + KL L++VDE+ RFGV Q+ K+        
Sbjct: 713  ERKSILNGLKEGTIDAVVGTHQLLSKNTTFQKLGLLVVDEEQRFGVNQKEKIKALRKDVD 772

Query: 423  VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            VL ++ATPIPRTL ++  G  ++S IT  P  R+PIKT +   +  + V   ++  L  G
Sbjct: 773  VLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLAAFDE-EAVRSSIRQELDRG 831

Query: 483  KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGT 541
             + +++ P++E  +        +    L +      + + HG+M++ + ES M +F  G 
Sbjct: 832  GQVFYVVPRVEGIE--------DVARQLQQMLPDLKLLVAHGQMAEGELESSMVAFNAGE 883

Query: 542  CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPP 599
              L++ TT++E G+D+   + I+IE+A  FGLAQL+QLRGRVGR    +   L Y     
Sbjct: 884  ADLMLCTTIVESGLDIPRVNTILIEDAHKFGLAQLYQLRGRVGRSGVQAHAWLFYPGDAS 943

Query: 600  LSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            LS  +  RL  ++       G+ +A  D++ R  G +LG++QSG  + +     L+  +L
Sbjct: 944  LSDTARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFD--LYMEML 1001

Query: 657  EIA 659
            + +
Sbjct: 1002 QES 1004


>gi|322375221|ref|ZP_08049735.1| transcription-repair coupling factor [Streptococcus sp. C300]
 gi|321280721|gb|EFX57760.1| transcription-repair coupling factor [Streptococcus sp. C300]
          Length = 1167

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 147/452 (32%), Positives = 234/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDEQHAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQVDILIGTHRVLSKDVVFS 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++            + + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQIYYLYNKVDTID--------RKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGFVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LGI QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGISQSGFID--SVGFELYSQLLEEA 994


>gi|21323730|dbj|BAB98356.1| Transcription-repair coupling factor - superfamily II helicase
            [Corynebacterium glutamicum ATCC 13032]
          Length = 1209

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 233/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G P   +    +++  N P+  T+ Q 
Sbjct: 580  DWKNAKKKARAAVREIAGELVELYAKRQSA--PGHPFAPDTPWQKEMEDNFPYVETEDQM 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  + +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 638  LAIDAVKEDMEKSVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQ 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++      + ++ ++     A  R+ L  +A G   I+IGTH L Q  +Q+  L LV
Sbjct: 698  STFEERMTGFPVTIKGLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLV 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  +++ +   P  R PI
Sbjct: 758  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPI 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     +V   ++  L    + ++I  ++ +  E   R + +          + +
Sbjct: 818  LTYVGPYED-KQVAASIRRELLRDGQVFFIHNKVADI-EKKAREIRDLVPE------ARV 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQ
Sbjct: 870  VVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQ 929

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G +
Sbjct: 930  LRGRVGRSRERGYAYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNV 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +QSG         +L+  L+  A +  + +
Sbjct: 990  LGAEQSGHI--AGVGFDLYVRLVGEAVEAYRAL 1020


>gi|322377900|ref|ZP_08052388.1| transcription-repair coupling factor [Streptococcus sp. M334]
 gi|321281076|gb|EFX58088.1| transcription-repair coupling factor [Streptococcus sp. M334]
          Length = 1169

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 145/452 (32%), Positives = 234/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + + +         P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSSDDEDQHAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  ++++I +DM     M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 614 TDDQLRSVEEIKRDMQDSQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTETLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++           ++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTID--------QKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|62389854|ref|YP_225256.1| transcription-repair coupling factor [Corynebacterium glutamicum ATCC
            13032]
 gi|41325189|emb|CAF19670.1| PUTATIVE TRANSCRIPTION-REPAIR COUPLING FACTOR [Corynebacterium
            glutamicum ATCC 13032]
          Length = 1217

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 233/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G P   +    +++  N P+  T+ Q 
Sbjct: 588  DWKNAKKKARAAVREIAGELVELYAKRQSA--PGHPFAPDTPWQKEMEDNFPYVETEDQM 645

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  + +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 646  LAIDAVKEDMEKSVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQ 705

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++      + ++ ++     A  R+ L  +A G   I+IGTH L Q  +Q+  L LV
Sbjct: 706  STFEERMTGFPVTIKGLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLV 765

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  +++ +   P  R PI
Sbjct: 766  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPI 825

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     +V   ++  L    + ++I  ++ +  E   R + +          + +
Sbjct: 826  LTYVGPYED-KQVAASIRRELLRDGQVFFIHNKVADI-EKKAREIRDLVPE------ARV 877

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQ
Sbjct: 878  VVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQ 937

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G +
Sbjct: 938  LRGRVGRSRERGYAYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNV 997

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +QSG         +L+  L+  A +  + +
Sbjct: 998  LGAEQSGHI--AGVGFDLYVRLVGEAVEAYRAL 1028


>gi|329850695|ref|ZP_08265540.1| transcription-repair coupling factor [Asticcacaulis biprosthecum C19]
 gi|328841010|gb|EGF90581.1| transcription-repair coupling factor [Asticcacaulis biprosthecum C19]
          Length = 1161

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 239/470 (50%), Gaps = 19/470 (4%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
            +  AR+  A  +L      L+ +        G  I+    +  +     P+  T  Q  A
Sbjct: 562  SWQARKAKAKQKLREMADGLIQLAAARALREGAQIDPPSGLYDEFCAQFPYEETDDQLHA 621

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            I+D+L+D+++   M R++ GDVG GKT VAL A      +G Q  I+ P  +LA+QH++ 
Sbjct: 622  IQDVLEDLAKGQPMDRLICGDVGFGKTEVALRAAFVVAMSGSQVAIVCPTTLLARQHFKT 681

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
              +  Q   + V  ++  + +    +  E +  G+  I+IGTHAL  + + +  L LVIV
Sbjct: 682  FTQRFQGWPVRVRQLSRLVGRKDADETREGLKKGEIEIVIGTHALLSEQVSFKDLGLVIV 741

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+  FGV+ + KL       H++ ++ATPIPRTL +   G  D+S I   P  R  ++T
Sbjct: 742  DEEQHFGVKHKEKLKAFRADVHMMALSATPIPRTLQMALSGIRDMSIIATPPVDRIAVRT 801

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519
             ++P + +  + E L      G +AY++ P++ +          +  + L          
Sbjct: 802  YVLPYDPVA-LREALLREKYRGGQAYYVVPRLSDL--------PDVADFLRVQVPEIRFV 852

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG++S    E VM +F  G   +L++TT++E G+DV  A+ +I+  A+ FGLAQL+Q+
Sbjct: 853  IGHGQLSPTALEDVMTAFYEGQYDVLLSTTIVESGLDVPTANTLIVHRADMFGLAQLYQI 912

Query: 580  RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR +  +   L    H  LS  S  RL VL++ ++   GF +A  DL  R  G +L
Sbjct: 913  RGRVGRSKTRAFAYLTTPQHRTLSVASEKRLKVLQSLDNLGAGFQLASHDLDIRGGGNLL 972

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
            G +QSG  + +    EL+  +LE A  + +     D +L+  R  S +I 
Sbjct: 973  GHEQSGHIREI--GVELYQQMLEDAVAELRQ--KSDENLSDHRSWSPQIN 1018


>gi|19552188|ref|NP_600190.1| transcription-repair coupling factor [Corynebacterium glutamicum ATCC
            13032]
          Length = 1214

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 233/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G P   +    +++  N P+  T+ Q 
Sbjct: 585  DWKNAKKKARAAVREIAGELVELYAKRQSA--PGHPFAPDTPWQKEMEDNFPYVETEDQM 642

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  + +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 643  LAIDAVKEDMEKSVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQ 702

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++      + ++ ++     A  R+ L  +A G   I+IGTH L Q  +Q+  L LV
Sbjct: 703  STFEERMTGFPVTIKGLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLV 762

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  +++ +   P  R PI
Sbjct: 763  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPI 822

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     +V   ++  L    + ++I  ++ +  E   R + +          + +
Sbjct: 823  LTYVGPYED-KQVAASIRRELLRDGQVFFIHNKVADI-EKKAREIRDLVPE------ARV 874

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQ
Sbjct: 875  VVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQ 934

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G +
Sbjct: 935  LRGRVGRSRERGYAYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNV 994

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +QSG         +L+  L+  A +  + +
Sbjct: 995  LGAEQSGHI--AGVGFDLYVRLVGEAVEAYRAL 1025


>gi|145295117|ref|YP_001137938.1| hypothetical protein cgR_1060 [Corynebacterium glutamicum R]
 gi|140845037|dbj|BAF54036.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1214

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 233/453 (51%), Gaps = 17/453 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +AG++  L  ++Q     G P   +    +++  N P+  T+ Q 
Sbjct: 585  DWKNAKKKARAAVREIAGELVELYAKRQSA--PGHPFAPDTPWQKEMEDNFPYVETEDQM 642

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  + +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 643  LAIDAVKEDMEKSVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQ 702

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               ++      + ++ ++     A  R+ L  +A G   I+IGTH L Q  +Q+  L LV
Sbjct: 703  STFEERMTGFPVTIKGLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLV 762

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  +++ +   P  R PI
Sbjct: 763  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPI 822

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     +V   ++  L    + ++I  ++ +  E   R + +          + +
Sbjct: 823  LTYVGPYED-KQVAASIRRELLRDGQVFFIHNKVADI-EKKAREIRDLVPE------ARV 874

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLHQ
Sbjct: 875  VVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQ 934

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY     L++ SY RL+ +    D   G  +A +DL+ R  G +
Sbjct: 935  LRGRVGRSRERGYAYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNV 994

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            LG +QSG         +L+  L+  A +  + +
Sbjct: 995  LGAEQSGHI--AGVGFDLYVRLVGEAVEAYRAL 1025


>gi|255281409|ref|ZP_05345964.1| transcription-repair coupling factor [Bryantella formatexigens DSM
            14469]
 gi|255267897|gb|EET61102.1| transcription-repair coupling factor [Bryantella formatexigens DSM
            14469]
          Length = 1179

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 139/458 (30%), Positives = 231/458 (50%), Gaps = 19/458 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW        A  + +A  +  L    Q + + G     +    ++      F  T  Q 
Sbjct: 574  EWNKTRTRVRAAVQNIAKDLVALY--SQRQNQKGFAYGPDTVWQREFEEMFEFEETDDQL 631

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+   +DM     M R++ GDVG GKT +A+ A   AV+ G Q V + P  ILAQQHY
Sbjct: 632  AAIEATKRDMESTKIMDRLICGDVGFGKTEIAIRAAFKAVQEGKQVVYLVPTTILAQQHY 691

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  ++  + V+++      A ++K L  +  G   I+IGTH +    ++Y  L L+
Sbjct: 692  NTFVQRMKDFPVRVDLLCRFRTPAEQKKTLVDLKKGLVDILIGTHRVLSKDVEYKDLGLL 751

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  D+S + E P  R  I
Sbjct: 752  VIDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPMERTAI 811

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N  + V E +   L+ G + Y++  ++    E   +        L     +++
Sbjct: 812  QTYVMEYNE-EMVREAISRELARGGQVYYVYNRVNTIVEMTNK-----IAKLLPE--ANV 863

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M + + E +M  F NG   +L++TT+IE G+D+ + + +II +A+  GL+QL+Q
Sbjct: 864  AFAHGQMKERELERIMYDFINGDIDVLVSTTIIETGLDISNVNTMIIHDADTMGLSQLYQ 923

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L+Y  +  L + +  RL  ++       G  IA  DL+ R  G +
Sbjct: 924  LRGRVGRSNRTAYAFLMYRRNKMLKEVAEKRLHAIREFTELGSGIKIAMRDLEIRGAGNL 983

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            LG +Q G  + +     L+  +L  + ++ K     DP
Sbjct: 984  LGAEQHGHMEAVGYD--LYCKMLNESVRELKG--EADP 1017


>gi|162446907|ref|YP_001620039.1| transcription-repair coupling factor [Acholeplasma laidlawii PG-8A]
 gi|161985014|gb|ABX80663.1| transcription-repair coupling factor (superfamily II helicase)
           [Acholeplasma laidlawii PG-8A]
          Length = 1143

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 133/446 (29%), Positives = 223/446 (50%), Gaps = 17/446 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W+    +     + L+ ++  L  ++   +      +    +     ++  +  T  Q+
Sbjct: 543 QWSKTKAQVKQKIKDLSDRLLNLYAKRHQAEG--YQFSPRTDMLTSFEKDFNYDETIDQQ 600

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI  + +DM     M R++ GDVG GKT VAL A   AV    Q   + P  +LA+QHY
Sbjct: 601 KAIDAVFEDMESSKPMDRLIAGDVGYGKTEVALRAAFKAVVDAKQVAYLVPTTVLARQHY 660

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              K   +     V +++  + +  +++ LE+IA G   ++IGTH L  D I +  L L 
Sbjct: 661 LTFKDRFEKYGGSVALLSRYVSKREQKEVLEKIAKGYIDVVIGTHRLLSDDIVFKDLGLF 720

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGVQ + K+ +       L ++ATPIPRTL +   G  D+S I   P  R P+
Sbjct: 721 IIDEEQRFGVQHKEKIKEIKVNVDTLTLSATPIPRTLQMAMYGLKDLSMIDTPPLNRYPV 780

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++   +   + E +   LS G + +++    E  +    +        L  +  + I
Sbjct: 781 QTYVVE-RQPALIKEAIDRELSRGGQVFYLFNNTERMEAQVLK-----LQQLVPN--ARI 832

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              HG+M+    E  +  F      +L++TT+IE G+D+ + + +II +A+H GLAQL+Q
Sbjct: 833 TYAHGKMTKNRIEDTLSRFVEKEFDILVSTTIIETGVDIPNTNTLIIHDADHLGLAQLYQ 892

Query: 579 LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGR + I+   L++     ++  +  RLSV+++  D   GF IA  DL  R  G+I
Sbjct: 893 LRGRVGRSDRIAYAYLMFDGYKDVNDEAKKRLSVIEDFTDLGSGFKIALRDLGIRGAGDI 952

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIA 659
           LG +QSG         +L+  LL+  
Sbjct: 953 LGEEQSGFID--SVGMDLYMKLLDEV 976


>gi|229496199|ref|ZP_04389919.1| transcription-repair coupling factor [Porphyromonas endodontalis
           ATCC 35406]
 gi|229316777|gb|EEN82690.1| transcription-repair coupling factor [Porphyromonas endodontalis
           ATCC 35406]
          Length = 1123

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 141/488 (28%), Positives = 237/488 (48%), Gaps = 22/488 (4%)

Query: 212 PRKAKDFEWTSPAR---ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
           P K  +    +  R         + +A  +  L      ++  G   + +  +  ++  +
Sbjct: 504 PPKLSELGGGAWNRLKERTKKRVKDIARDLIRLYA--ARRESEGFAFSPDSYLQHELEAS 561

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
             +  T  Q  A++ + QDM Q   M R++ GDVG GKT +A+ A   AV    Q  ++ 
Sbjct: 562 FIYEETPDQLKAMEAVKQDMEQPRPMDRLICGDVGFGKTEIAIRAAFKAVADSKQVAVLV 621

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA QHY    +  ++  + V   +        ++ LE +  G+  I++GTH L   
Sbjct: 622 PTTILAYQHYRTFSERLKDLPVRVAYFSRAQSAKESKQLLEDLKEGKIDIVVGTHRLVGK 681

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
           ++Q+  L L+++DE+ +FGV  + KL         L M+ATPIPRTL  + +G  D+S I
Sbjct: 682 NVQFKDLGLLVIDEEQKFGVAVKEKLRSLQVNVDTLTMSATPIPRTLQFSLMGTRDLSNI 741

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
              P  R P+ T +I  +  + + E +   LS   + +++  +I++  E   R + +R  
Sbjct: 742 LTPPRNRYPVATEVIRFD-PEAIAEAINFELSRNGQVFFVHNRIDDI-EGIARMIQQRI- 798

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                    IA+ HGRM+  + E +  SF      +L++TT++E GIDV +A+ III++A
Sbjct: 799 -----PDCRIAVGHGRMNQTELEQLFVSFSQHEFDVLVSTTIVENGIDVSNANTIIIDSA 853

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEE 623
            HFGL+ LHQLRGRVGR    + C L+  P   L + S  RL  +++  D   G  IA +
Sbjct: 854 HHFGLSDLHQLRGRVGRSSRKAFCYLITPPMDLLPEASQRRLRAIESYSDLGSGIRIAMQ 913

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQ---PELHDSLLEIARKDAKHILTQDP-DLTSVRGQ 679
           DL  R  G + G +QSG    L          +++ E+ R++ + +   +  +L +    
Sbjct: 914 DLDIRGAGNVFGSEQSGFIADLGFDAYHKVFDEAVREVKREEFEELFRDESAELAAEEDC 973

Query: 680 SIRILLYL 687
                LYL
Sbjct: 974 PFESDLYL 981


>gi|215429881|ref|ZP_03427800.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            EAS054]
 gi|260200049|ref|ZP_05767540.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            T46]
 gi|289442441|ref|ZP_06432185.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            T46]
 gi|289753081|ref|ZP_06512459.1| transcription-repair coupling factor Mfd [Mycobacterium tuberculosis
            EAS054]
 gi|289415360|gb|EFD12600.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            T46]
 gi|289693668|gb|EFD61097.1| transcription-repair coupling factor Mfd [Mycobacterium tuberculosis
            EAS054]
          Length = 1234

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 235/474 (49%), Gaps = 17/474 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +AG++  L  ++Q     G   + +     ++     F+ T  Q 
Sbjct: 597  DWANTKTKARRAVREIAGELVSLYAKRQA--SPGHAFSPDTPWQAELEDAFGFTETVDQL 654

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 655  TAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 714

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + ++ ++     A  R  ++ +A G   I+IGTH L Q  +++  L LV
Sbjct: 715  QTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLV 774

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 775  VVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 834

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   ++   L+  L    +A+++  ++             R   L     + +
Sbjct: 835  LTYVGPHDD-KQIAAALRRELLRDGQAFYVHNRVSSIDA-----AAARVRELVPE--ARV 886

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E+ +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 887  VVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 946

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 947  LRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNV 1006

Query: 634  LGIKQSGMPKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LGI+QSG    +     +      LE  R   +         T+   + +RI L
Sbjct: 1007 LGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDL 1060


>gi|237710305|ref|ZP_04540786.1| transcription-repair coupling factor [Bacteroides sp. 9_1_42FAA]
 gi|229455767|gb|EEO61488.1| transcription-repair coupling factor [Bacteroides sp. 9_1_42FAA]
          Length = 1121

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 142/467 (30%), Positives = 229/467 (49%), Gaps = 19/467 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  +  L    Q K+E G   + +  +  ++  +  +  T  Q  
Sbjct: 508 WEKMKERTKSKIKDIARDLIKLY--SQRKQEKGFSYSPDSFMQHELEASFIYEDTPDQLK 565

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D   DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 566 ATQDAKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVTDNKQVAVLVPTTVLAYQHFQ 625

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++    V+ ++         + ++ +A+G+ +I+IGTH +   S+++  L L+I
Sbjct: 626 TFSERLKDFPCKVDYLSRARSTKDVSRIVKELANGKINILIGTHKIIGKSVKFKDLGLLI 685

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 686 IDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 745

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  D + E +   +S   + +++  +I+   E                    + 
Sbjct: 746 TEVHTFNE-DIITEAINFEMSRNGQVFFVNNRIQNLVELEAMIK-------RNIPDCRVC 797

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 798 IGHGQMEPEKLEKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 857

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 858 RGRVGRSNKKAFCYLLAPPLTSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 917

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           G +QSG    L    E +  +L  A K+ K    +  DL +   Q+ 
Sbjct: 918 GAEQSGFIADL--GYETYQKILAEAVKELKE--DEFADLYAEELQAA 960


>gi|323344976|ref|ZP_08085200.1| transcription-repair coupling factor [Prevotella oralis ATCC 33269]
 gi|323094246|gb|EFZ36823.1| transcription-repair coupling factor [Prevotella oralis ATCC 33269]
          Length = 1177

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 150/578 (25%), Positives = 258/578 (44%), Gaps = 39/578 (6%)

Query: 100  EITLLFFYRKT---EMLKNVFFE-GRKITVTGKIKKLKNRIIMVHP-HYIFHNSQDVNFP 154
            ++ + FF          K      G +    GKI      +  + P  YI H   D    
Sbjct: 452  DLRVCFFTDHQIFDRFHKYSLKSDGARA---GKIALTMKELQEMEPGDYIVHV--DFGIG 506

Query: 155  LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI---EKDLLQKKSFPSIAEAFNIIHN 211
                +  +P+G S     +II +   ++ V    +    K   Q    P    A      
Sbjct: 507  KFGGLVRVPSGNSYQEVIRIIYQNNDKVDVSIHSLYKISKYRRQNTGEPPRLSALGTG-- 564

Query: 212  PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
                    W           + +A  +  L  ++  + E G   + +  +  ++  +  +
Sbjct: 565  -------AWERLKERTKKRIKDIARDLIKLYAKR--RHEKGFAFSADSFMQHELEASFLY 615

Query: 272  SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
              T  Q  A +++  DM     M R++ GDVG GKT VA+ A   A   G Q  ++ P  
Sbjct: 616  EDTPDQLKATQEVKADMESLRPMDRLVCGDVGFGKTEVAVRAAFKAACDGKQVAVLVPTT 675

Query: 332  ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
            +LA QHY+  +   ++  + V+ ++        ++ L  +  G+  I++GTH L   +++
Sbjct: 676  VLAFQHYQTFRNRLKDFPVRVDYLSRARSVKQTKQILADLETGKIDILVGTHKLIGKTVK 735

Query: 392  YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
            ++ L L+I+DE+ +FGV  + +L +  +    L M+ATPIPRTL  + +G  D+S +   
Sbjct: 736  WHDLGLLIIDEEQKFGVSTKERLRKLQSNVDTLTMSATPIPRTLQFSLMGARDMSIMRTP 795

Query: 452  PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
            P  R PI T +      + + + +   +S   + +++  +I    E  +           
Sbjct: 796  PPNRYPIHTELSTYGH-EVIADAINFEMSRNGQVFFVNDRISGLPEIAYLIH-------E 847

Query: 512  EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                  +AI HG+MS  + E ++  F N    +L++TT++E GID+ +A+ III +A  F
Sbjct: 848  HVPDCRVAIAHGQMSPDELERIIMGFINYDYDVLLSTTIVENGIDIPNANTIIINDAHRF 907

Query: 572  GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLK 626
            GL+ LHQ+RGRVGR    + C LL  P   L+  +  RL  L+   D   GF +A +DL 
Sbjct: 908  GLSDLHQMRGRVGRSNRKAFCYLLAPPKSVLTPEARRRLEALETFSDLGSGFNLAMQDLD 967

Query: 627  QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R  G +LG +QSG  + L    E +  +L  A  + K
Sbjct: 968  IRGAGNLLGAEQSGFMEDL--GYETYQKILNQAVTELK 1003


>gi|332885155|gb|EGK05406.1| hypothetical protein HMPREF9456_02607 [Dysgonomonas mossii DSM
           22836]
          Length = 1108

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 227/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +     + +A  +  L  +++ ++        +  +  ++  +  +  T  Q  
Sbjct: 498 WNKIKEKTKNKVKDIARDLIQLYAKRRQEEG--FSFAPDSFLQHELEASFIYEDTPDQVK 555

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT V++ A   AV    Q  ++ P  +LA QHY+
Sbjct: 556 ATADVKLDMENSKPMDRLICGDVGFGKTEVSIRAAFKAVTDNKQVAVLVPTTVLAYQHYQ 615

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  ++    VE I+        ++ +  +  G+  I+IGTH +    IQ+  L L+I
Sbjct: 616 TFKERLKDFPCRVEYISRARSAGQIKEVINDLKEGKVDILIGTHRIVGKDIQFKDLGLLI 675

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q  +    L MTATPIPRTL  + +G  D+S IT  P  R PI+
Sbjct: 676 IDEEQKFGVAVKEKLKQMKSNVDTLTMTATPIPRTLQFSLMGARDLSAITTPPPNRYPIQ 735

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  + E ++  +S   + ++I  +I+   E       E          + IA
Sbjct: 736 TEVHTFDPL-IIREAIEFEMSRNGQVFFINNRIKSIHELEDIIKREV-------PDARIA 787

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M     ES++  F N    +L+AT+++E GID+ +A+ III NA++FGL+ LHQL
Sbjct: 788 VGHGQMDPAKLESIIIDFVNQEYDVLLATSIVESGIDIPNANTIIINNAQNFGLSDLHQL 847

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + +   LL  P   L+  +  RL  ++N  +   GF IA +DL  R  G +L
Sbjct: 848 RGRVGRSNKKAFAYLLAPPLHTLTPEARRRLQAIENFSELGHGFHIAMQDLDIRGAGNLL 907

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E++  +L  A  + K
Sbjct: 908 GAEQSGFIADL--GYEVYQKILTEAVNELK 935


>gi|260204238|ref|ZP_05771729.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            K85]
 gi|289573660|ref|ZP_06453887.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            K85]
 gi|289538091|gb|EFD42669.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            K85]
          Length = 1234

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 235/474 (49%), Gaps = 17/474 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +AG++  L  ++Q     G   + +     ++     F+ T  Q 
Sbjct: 597  DWANTKTKARRAVREIAGELVSLYAKRQA--SPGHAFSPDTPWQAELEDAFGFTETVDQL 654

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 655  TAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 714

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + ++ ++     A  R  ++ +A G   I+IGTH L Q  +++  L LV
Sbjct: 715  QTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLV 774

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 775  VVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 834

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   ++   L+  L    +A+++  ++             R   L     + +
Sbjct: 835  LTYVGPHDD-KQIAAALRRELLRDGQAFYVHNRVSSIDA-----AAARVRELVPE--ARV 886

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E+ +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 887  VVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 946

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 947  LRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNV 1006

Query: 634  LGIKQSGMPKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LGI+QSG    +     +      LE  R   +         T+   + +RI L
Sbjct: 1007 LGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDL 1060


>gi|218752691|ref|ZP_03531487.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            GM 1503]
 gi|289761156|ref|ZP_06520534.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            GM 1503]
 gi|289708662|gb|EFD72678.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            GM 1503]
          Length = 1234

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 235/474 (49%), Gaps = 17/474 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +AG++  L  ++Q     G   + +     ++     F+ T  Q 
Sbjct: 597  DWANTKTKARRAVREIAGELVSLYAKRQA--SPGHAFSPDTPWQAELEDAFGFTETVDQL 654

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 655  TAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 714

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + ++ ++     A  R  ++ +A G   I+IGTH L Q  +++  L LV
Sbjct: 715  QTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLV 774

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 775  VVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 834

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   ++   L+  L    +A+++  ++             R   L     + +
Sbjct: 835  LTYVGPHDD-KQIAAALRRELLRDGQAFYVHNRVSSIDA-----AAARVRELVPE--ARV 886

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E+ +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 887  VVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 946

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 947  LRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNV 1006

Query: 634  LGIKQSGMPKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LGI+QSG    +     +      LE  R   +         T+   + +RI L
Sbjct: 1007 LGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDL 1060


>gi|134097431|ref|YP_001103092.1| transcription-repair coupling factor [Saccharopolyspora erythraea
            NRRL 2338]
 gi|291004579|ref|ZP_06562552.1| transcription-repair coupling factor [Saccharopolyspora erythraea
            NRRL 2338]
 gi|133910054|emb|CAM00166.1| transcription-repair coupling factor [Saccharopolyspora erythraea
            NRRL 2338]
          Length = 1195

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 131/490 (26%), Positives = 233/490 (47%), Gaps = 24/490 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +     + +A ++  L   +Q     G     +    +++    P++ T  Q 
Sbjct: 583  DWKNTKAKARKAVKEIAAELVQLYAARQSA--PGHAFGADTPWQRELEDAFPYTETGDQL 640

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 641  AAIDEVKADMQRAVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHL 700

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                   ++  + V+ ++         +    +A G   ++IGTH L Q  ++Y  L LV
Sbjct: 701  NTFTDRMRSFPVTVKGLSRFTDPLESEQTTTGLAEGTVDVVIGTHRLLQTGVRYKDLGLV 760

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 761  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPV 820

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   ++  L    + +++  +++  +++           L     + I
Sbjct: 821  LTYVGAYDE-KQVAAAIRRELLRDGQVFFVHNRVQTIEKAARH-----LRELVPE--ARI 872

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E ++  F      +L+ TT++E G+D+ +A+ +I+E ++  GL+QLHQ
Sbjct: 873  VTAHGQMNEDRLEKIIQGFWEREHDVLVCTTIVETGLDISNANTLIVERSDVLGLSQLHQ 932

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PL+  ++ RL+ +    +   G  +A +DL+ R  G I
Sbjct: 933  LRGRVGRARERGYAYFLYPEEKPLTDTAHDRLATIAQNSELGAGMAVAMKDLEIRGAGNI 992

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-------Y 686
            LG +QSG         +L+  L+  A +  +     +P         +R+ L       +
Sbjct: 993  LGAEQSGHI--AGVGFDLYVRLVGEAVEAFRRHAGAEPGAGEEELPEVRVDLPVDAHIPH 1050

Query: 687  LYQYNEAFQF 696
             Y   E  + 
Sbjct: 1051 DYVPGERLRL 1060


>gi|15608160|ref|NP_215536.1| transcription-repair coupling factor Mfd (TRCF) [Mycobacterium
            tuberculosis H37Rv]
 gi|15840448|ref|NP_335485.1| transcription-repair coupling factor [Mycobacterium tuberculosis
            CDC1551]
 gi|31792211|ref|NP_854704.1| transcription-repair coupling factor Mfd (TRCF) [Mycobacterium bovis
            AF2122/97]
 gi|121636949|ref|YP_977172.1| putative transcription-repair coupling factor mfd [Mycobacterium
            bovis BCG str. Pasteur 1173P2]
 gi|148660802|ref|YP_001282325.1| transcription-repair coupling factor [Mycobacterium tuberculosis
            H37Ra]
 gi|148822229|ref|YP_001286983.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            F11]
 gi|167968120|ref|ZP_02550397.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            H37Ra]
 gi|215402835|ref|ZP_03415016.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            02_1987]
 gi|224989421|ref|YP_002644108.1| putative transcription-repair coupling factor [Mycobacterium bovis
            BCG str. Tokyo 172]
 gi|253799950|ref|YP_003032951.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            KZN 1435]
 gi|254363936|ref|ZP_04979982.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            str. Haarlem]
 gi|260185931|ref|ZP_05763405.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            CPHL_A]
 gi|289446601|ref|ZP_06436345.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            CPHL_A]
 gi|289744756|ref|ZP_06504134.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            02_1987]
 gi|297633546|ref|ZP_06951326.1| transcription-repair coupling factor [Mycobacterium tuberculosis KZN
            4207]
 gi|297730531|ref|ZP_06959649.1| transcription-repair coupling factor [Mycobacterium tuberculosis KZN
            R506]
 gi|306775155|ref|ZP_07413492.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu001]
 gi|306781930|ref|ZP_07420267.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu002]
 gi|306783715|ref|ZP_07422037.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu003]
 gi|306788070|ref|ZP_07426392.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu004]
 gi|306792403|ref|ZP_07430705.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu005]
 gi|306796806|ref|ZP_07435108.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu006]
 gi|306802692|ref|ZP_07439360.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu008]
 gi|306806871|ref|ZP_07443539.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu007]
 gi|306967072|ref|ZP_07479733.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu009]
 gi|306971262|ref|ZP_07483923.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu010]
 gi|307078991|ref|ZP_07488161.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu011]
 gi|307083551|ref|ZP_07492664.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu012]
 gi|313657860|ref|ZP_07814740.1| transcription-repair coupling factor [Mycobacterium tuberculosis KZN
            V2475]
 gi|54037787|sp|P64327|MFD_MYCBO RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|54041091|sp|P64326|MFD_MYCTU RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
            AltName: Full=ATP-dependent helicase mfd
 gi|3261715|emb|CAB06859.1| PROBABLE TRANSCRIPTION-REPAIR COUPLING FACTOR MFD (TRCF)
            [Mycobacterium tuberculosis H37Rv]
 gi|13880619|gb|AAK45299.1| transcription-repair coupling factor [Mycobacterium tuberculosis
            CDC1551]
 gi|31617799|emb|CAD93908.1| PROBABLE TRANSCRIPTION-REPAIR COUPLING FACTOR MFD (TRCF)
            [Mycobacterium bovis AF2122/97]
 gi|121492596|emb|CAL71064.1| Probable transcription-repair coupling factor mfd [Mycobacterium
            bovis BCG str. Pasteur 1173P2]
 gi|134149450|gb|EBA41495.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            str. Haarlem]
 gi|148504954|gb|ABQ72763.1| transcription-repair coupling factor [Mycobacterium tuberculosis
            H37Ra]
 gi|148720756|gb|ABR05381.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            F11]
 gi|224772534|dbj|BAH25340.1| putative transcription-repair coupling factor [Mycobacterium bovis
            BCG str. Tokyo 172]
 gi|253321453|gb|ACT26056.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            KZN 1435]
 gi|289419559|gb|EFD16760.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            CPHL_A]
 gi|289685284|gb|EFD52772.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            02_1987]
 gi|308216305|gb|EFO75704.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu001]
 gi|308325321|gb|EFP14172.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu002]
 gi|308331498|gb|EFP20349.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu003]
 gi|308335304|gb|EFP24155.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu004]
 gi|308339112|gb|EFP27963.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu005]
 gi|308342784|gb|EFP31635.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu006]
 gi|308346693|gb|EFP35544.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu007]
 gi|308350608|gb|EFP39459.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu008]
 gi|308355241|gb|EFP44092.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu009]
 gi|308359196|gb|EFP48047.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu010]
 gi|308363098|gb|EFP51949.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu011]
 gi|308366762|gb|EFP55613.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            SUMu012]
 gi|323720520|gb|EGB29602.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            CDC1551A]
 gi|326904753|gb|EGE51686.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            W-148]
 gi|328459693|gb|AEB05116.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            KZN 4207]
          Length = 1234

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 235/474 (49%), Gaps = 17/474 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +AG++  L  ++Q     G   + +     ++     F+ T  Q 
Sbjct: 597  DWANTKTKARRAVREIAGELVSLYAKRQA--SPGHAFSPDTPWQAELEDAFGFTETVDQL 654

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 655  TAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 714

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + ++ ++     A  R  ++ +A G   I+IGTH L Q  +++  L LV
Sbjct: 715  QTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLV 774

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 775  VVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 834

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   ++   L+  L    +A+++  ++             R   L     + +
Sbjct: 835  LTYVGPHDD-KQIAAALRRELLRDGQAFYVHNRVSSIDA-----AAARVRELVPE--ARV 886

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E+ +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 887  VVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 946

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 947  LRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNV 1006

Query: 634  LGIKQSGMPKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LGI+QSG    +     +      LE  R   +         T+   + +RI L
Sbjct: 1007 LGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDL 1060


>gi|262198049|ref|YP_003269258.1| transcription-repair coupling factor [Haliangium ochraceum DSM 14365]
 gi|262081396|gb|ACY17365.1| transcription-repair coupling factor [Haliangium ochraceum DSM 14365]
          Length = 1257

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 149/486 (30%), Positives = 249/486 (51%), Gaps = 37/486 (7%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++  A  + LA ++  L  ++  +     P +    + ++      F  T  Q+ 
Sbjct: 636  WQKARKKASAQVKALAEELLKLYAQRAAQPGHAYPSS--DHMFREFEATFAFEETPDQQR 693

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI ++L DM  +  M R++ GDVG GKT VAL A   AV  G QA ++AP  +L +QHY 
Sbjct: 694  AIDEVLADMESERPMDRLVCGDVGYGKTEVALRACFKAVAGGKQAALLAPTTVLVEQHYA 753

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             + +      + V  ++    +A +   ++ +A G   +++GTH +    +++  L L++
Sbjct: 754  TVCERFAGWPVSVGRLSRFQSRAEQLDTIKGLAAGTVDLVVGTHRVLSKDVRFKDLGLLV 813

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV  + +L +  T   VL +TATPIPRTL L   G  D+S I   PA R+ ++
Sbjct: 814  IDEEQRFGVTHKERLKRVRTQLDVLTLTATPIPRTLHLAMSGLRDLSIIATPPADRRAVR 873

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQI-----------------EEKKESNFRS 502
            T +  ++    + E ++  L  G + +++CP+I                 + +     R 
Sbjct: 874  TFVAQVDD-GVLREGIRRELGRGGQVFFVCPRIGADPAPSKGKVKGKGKSQGETARRVRR 932

Query: 503  VVERFNSLHEHFT-----SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                 +   EH       + +A+ HG+MS    E VM  F +G  ++L++TT++E G+D+
Sbjct: 933  GDISLDEWAEHLRALVPEARVAVAHGQMSAEALEKVMIDFVSGNLEILVSTTIVESGLDI 992

Query: 558  VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE 615
              A+ + ++ A+ FGLAQL+QLRGR+GR ++ + C LL  PP  LS ++  RL  L+   
Sbjct: 993  ARANTMFVDRADSFGLAQLYQLRGRIGRSKQRAFCYLLVPPPEKLSSDARRRLETLQRFS 1052

Query: 616  D---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK-----DAKHIL 667
            +   GF IA  DL+ R  GE+LG KQSG         E + ++LE A       DA  + 
Sbjct: 1053 ELGAGFQIASHDLEIRGGGELLGAKQSGAI--AAVGFEAYAAMLEEAVAELRSGDAGLVR 1110

Query: 668  TQDPDL 673
             +DP+L
Sbjct: 1111 PRDPEL 1116


>gi|283779708|ref|YP_003370463.1| transcription-repair coupling factor [Pirellula staleyi DSM 6068]
 gi|283438161|gb|ADB16603.1| transcription-repair coupling factor [Pirellula staleyi DSM 6068]
          Length = 1087

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 146/463 (31%), Positives = 236/463 (50%), Gaps = 15/463 (3%)

Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
               P  AK    T   +++ A   +    + +L ++       GI  + + +  ++   
Sbjct: 488 TKTRPSLAKIGGKTWLKQKKAAESAVADLAVEMLELQAMRSARPGIAFSADSEWQKEFDN 547

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
           + PF  T  Q ++I  I  DM +   M R+L GDVG GKT VA+ A   AV+ G Q  ++
Sbjct: 548 SFPFQETVDQLTSIASIKADMQRARPMDRLLCGDVGFGKTEVAMRAAFKAVDNGYQVAVL 607

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P  ILA+QHY    +        +  ++        R+AL+ I  G+  I++GTH L  
Sbjct: 608 VPTTILAEQHYRSFIERMAEFPCDIAKLSRFCTSQEEREALKGIKSGKVDIVVGTHRLAS 667

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             + ++ L LVI+DE+ RFGV  + +L        VL ++ATPIPRTL ++ +G  DIS 
Sbjct: 668 QDVDFHNLGLVIIDEEQRFGVDVKERLKALKATVDVLTLSATPIPRTLHMSLVGVRDISN 727

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           +   P  R P++T +   N  D +   +   L+ G + Y++  ++ + +      +  R 
Sbjct: 728 LESPPEDRVPVETSVKRWNN-DLIRTAVLRELNRGGQIYFVHNRVNDIE-----IIARRL 781

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           N +     +S+ I HG+M++ + E VM  F  G   LL+ATT++E G+D+ +A+ I I  
Sbjct: 782 NQIVPE--ASLRIGHGQMNETELEQVMVDFVAGKFDLLLATTIVESGLDIPNANTIFINE 839

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAE 622
           AE +GLA LHQLRGRVGR +  + C LL   +  ++ N+  RL  ++   +   GF I+ 
Sbjct: 840 AERYGLADLHQLRGRVGRYKNRAHCYLLIDSNKSITPNAARRLRAIEEFSEMGAGFQISM 899

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            DL+ R  G +LG +QSG         EL+  LLE A +  + 
Sbjct: 900 RDLEIRGAGNLLGTQQSGHI--AAVGYELYCQLLENAVRSLQR 940


>gi|237736104|ref|ZP_04566585.1| transcription-repair coupling factor [Fusobacterium mortiferum ATCC
           9817]
 gi|229421815|gb|EEO36862.1| transcription-repair coupling factor [Fusobacterium mortiferum ATCC
           9817]
          Length = 988

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 148/452 (32%), Positives = 241/452 (53%), Gaps = 13/452 (2%)

Query: 225 RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
           +     +E+L     ++ ++ +   E G     +    ++   + P+  T SQ  AI+D+
Sbjct: 413 KREKIAEEMLQFAKEIVEIQARRDLEAGYSFAPDNLWQEEFEESFPYKETPSQLQAIEDV 472

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
            +DM     M R++ GDVG GKT VA+ A   A   G Q V+M P  +LAQQHYE   + 
Sbjct: 473 KRDMESSRIMDRVVCGDVGYGKTEVAIRAAFKAAIEGKQVVLMVPTTVLAQQHYERFTER 532

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
            +N  I +E+++  +    + + L++I  G   I+IGTH +  + +++  L LVI+DE+ 
Sbjct: 533 MKNYPINIELLSRLLTSKEQTQTLKKIKEGGVDIVIGTHRILSEDVEFKDLRLVIIDEEQ 592

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           +FGV+ + KL +  +   VL +TATPIPRTL L  LG  D+S I   P GRKPI T  + 
Sbjct: 593 KFGVKAKEKLKKLRSKVDVLTLTATPIPRTLNLALLGIRDLSVIDTPPEGRKPINTFFVE 652

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
               + + E +   ++   + ++I   ++  +    +   E    L E+    I  +HG+
Sbjct: 653 GLEKN-IREIIMKEIAREGQVFYIFNSVKGIE----KKTQELRKILPEYL--KIDFVHGQ 705

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M+  D +  +  F+NG   +L+ATT+IE GID+ +A+ +II+ A+  GL+Q++QLRGRVG
Sbjct: 706 MTPRDIKEKIKEFENGEIDILVATTIIENGIDIENANTMIIDRADKLGLSQIYQLRGRVG 765

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTED----GFLIAEEDLKQRKEGEILGIKQSG 640
           RG   S C LL     +K +  R   +KN E+    G  ++ ED++ R  GEILG KQ G
Sbjct: 766 RGNRQSYCYLLTKEYQTKKAKEREESIKNLEEIDGGGLQLSMEDMRIRGAGEILGEKQHG 825

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           + +       L+  +L+      K    +D D
Sbjct: 826 ILET--FGYTLYMKMLQEEIDKIKGRFEEDID 855


>gi|306992259|gb|ADN19246.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 430

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 158/435 (36%), Positives = 250/435 (57%), Gaps = 8/435 (1%)

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           G +  + GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL
Sbjct: 1   GEEYIINGKLQFKYGQLIVENPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNAL 60

Query: 180 -SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI 238
              +  + E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+
Sbjct: 61  HDYVQEIEEFFDEEFLFEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQM 117

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL L+++  K + GI    E    +  L  +PF  T +Q   +K+I+ DM+    M R++
Sbjct: 118 ALFLVKRSVKGKKGIKF--ERVELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLV 175

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT+VA  +M  AV+ G Q  +MAP  ILA+QHY  +K+  +NT I + +++G+
Sbjct: 176 QGDVGSGKTVVAACSMYIAVKNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGS 235

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +  +++++ LE+I +G   I+IGTHAL +D + +  L L I DEQHRFGV+QR  LT+K 
Sbjct: 236 ISPSNKKEVLEKIKNGDYDIVIGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKG 295

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRTL L   GD+DIS I + P GRK +KT +I  +   +  E     
Sbjct: 296 ENPDVLVMTATPIPRTLALILYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKE 355

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDS 536
           + +G++ Y +CP IEE  + N  S    +  +++     + + ++HG+M+D DKE VM+ 
Sbjct: 356 VKKGRQVYVVCPLIEESDKINAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEE 415

Query: 537 FKNGTCKLLIATTVI 551
           F NG   +L++TTVI
Sbjct: 416 FVNGKIDILVSTTVI 430


>gi|261417240|ref|YP_003250923.1| transcription-repair coupling factor [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373696|gb|ACX76441.1| transcription-repair coupling factor [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327048|gb|ADL26249.1| transcription-repair coupling factor [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 1132

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 147/491 (29%), Positives = 246/491 (50%), Gaps = 27/491 (5%)

Query: 188 WIEKDLLQKKSFP-SIAEAFNIIHNPRKAK-------DFEWTSPARERLAYDELLAGQIA 239
            +E D   +  FP S  +    +  P   +          W +  +        +A  + 
Sbjct: 477 LLEYDGGDRLKFPVSDLQKIERLDRPEDIETKLDRLGSKTWENIKKRVKQKVIQIARDLV 536

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            L  +++  +  G P   +G + ++   +  + PT  Q  A  DI +DM     M R++ 
Sbjct: 537 ELYAKRELVEGFGFP--PDGNMQKEFEDSFEYDPTPDQLRATADIKRDMESHRPMDRLIC 594

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A    V +  Q  I+ P  ILA QHYE   +      + + ++    
Sbjct: 595 GDVGFGKTEVAMRAAFKCVSSNKQVAILVPTTILAAQHYENFCERFAAYPVKIALMNRYK 654

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++  + IA G  +I+IGTHAL  +  ++  L L+I+DE+ +FGV+Q+ KL Q   
Sbjct: 655 SAKEKKEIFKEIAAGTVNIVIGTHALLSNKSEFKDLGLLIIDEEQKFGVKQKEKLRQLRL 714

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-V 478
           A   L M+ATPIPR+L L+  G  DIS I   P  R P++T ++   R DEV++   +  
Sbjct: 715 AVDTLSMSATPIPRSLHLSMTGVRDISLINTPPINRLPVETKLMQ--RDDEVLKNAILDE 772

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L+ G + + +  +++   +       E   ++     + +A+ HG+M D + E VMD+F 
Sbjct: 773 LARGGQVFVVNDRVQTIYKLT-----EDIEAMAPE--AKVAVAHGQMEDHELERVMDAFL 825

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +    +L++T++IE G+DV +A+ III NA HFG++QL+Q+RGRVGR   ++   L+   
Sbjct: 826 SRKFDILVSTSIIESGLDVPNANTIIIMNAHHFGISQLYQMRGRVGRSSVLAKAFLVIPQ 885

Query: 599 --PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
              +S+ S  RL  L+   D   G+ +A  DL+ R  G +LG +Q G         E + 
Sbjct: 886 RGEISQESMRRLKALEQFTDLGSGYQLAMRDLEIRGAGNLLGQEQHGFI--AEVGFETYV 943

Query: 654 SLLEIARKDAK 664
            L+  A +  +
Sbjct: 944 RLVREAVEMLR 954


>gi|314922168|gb|EFS85999.1| transcription-repair coupling factor [Propionibacterium acnes
            HL001PA1]
 gi|314965251|gb|EFT09350.1| transcription-repair coupling factor [Propionibacterium acnes
            HL082PA2]
 gi|315094011|gb|EFT65987.1| transcription-repair coupling factor [Propionibacterium acnes
            HL060PA1]
 gi|327329541|gb|EGE71301.1| transcription-repair coupling factor [Propionibacterium acnes
            HL103PA1]
          Length = 1208

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 230/489 (47%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 599  DWRKRKARARKAVREIAAELIKLYAARQA--TKGHAFGPDTAWQRELEDAFAYVETPDQL 656

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 657  TTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 716

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 717  QTFTERYAGFPVKVAALSRFQTDTEARETLEGLKRGTVDVVVGTHRLLAKEVEFKDLGLV 776

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 777  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 836

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +         +   L     + I
Sbjct: 837  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIE-----KTAAKLRELVPE--ARI 888

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 889  VTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQ 948

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 949  LRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNL 1008

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 1009 LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETE 1066

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1067 RLRLEMYKR 1075


>gi|315104557|gb|EFT76533.1| transcription-repair coupling factor [Propionibacterium acnes
            HL050PA2]
          Length = 1208

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 230/489 (47%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 599  DWRKRKARARKAVREIAAELIKLYAARQA--TKGHAFGPDTAWQRELEDAFAYVETPDQL 656

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 657  TTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 716

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 717  QTFTERYAGFPVKVAALSRFQTDTEARETLEGLKRGTVDVVVGTHRLLAKEVEFKDLGLV 776

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 777  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 836

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +         +   L     + I
Sbjct: 837  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIE-----KTAAKLRELVPE--ARI 888

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 889  VTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQ 948

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 949  LRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNL 1008

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 1009 LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETE 1066

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1067 RLRLEMYKR 1075


>gi|307705912|ref|ZP_07642750.1| transcription-repair coupling factor [Streptococcus mitis SK597]
 gi|307620573|gb|EFN99671.1| transcription-repair coupling factor [Streptococcus mitis SK597]
          Length = 1168

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 145/452 (32%), Positives = 234/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + + +         P+  
Sbjct: 555 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDEDQHAFDDAFPYVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  ++++I +DM     M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 613 TDDQLRSVEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +    + + 
Sbjct: 673 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTETLEKLKNGQVDILIGTHRVLSKDVVFA 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++           ++ + L E 
Sbjct: 793 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTID--------QKVSELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 844 IPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 964 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 993


>gi|87311618|ref|ZP_01093735.1| transcription-repair coupling factor [Blastopirellula marina DSM
           3645]
 gi|87285621|gb|EAQ77538.1| transcription-repair coupling factor [Blastopirellula marina DSM
           3645]
          Length = 1077

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 153/499 (30%), Positives = 246/499 (49%), Gaps = 25/499 (5%)

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILRNI 269
            P  AK     +  +++ A ++ +      LL ++   +   GI  + +    ++   + 
Sbjct: 482 RPPLAK-IGGVTWQKQKKAVEQAVHDLAGELLEVQAMRRSRPGIAFSADTLWQREFDLSF 540

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T  Q +AI +I  DM Q   M R+L GDVG GKT VA+     AV+ G Q  I+ P
Sbjct: 541 PYEETTDQLTAIGNIKFDMEQPRPMDRLLCGDVGFGKTEVAMRGAFKAVDNGYQVAILVP 600

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+QHY+ +++        +  ++       +R  ++ +  G   I++GTH L    
Sbjct: 601 TTILAEQHYKSLRERMAEFPFTIARLSRFASAKEQRDVVKGLKDGTIDIVVGTHRLASKD 660

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L LV++DE+ RFGV+ + +L Q  T   VL MTATPIPRTL ++ +G  DIS + 
Sbjct: 661 VSFQNLGLVVIDEEQRFGVEIKERLKQLRTTVDVLTMTATPIPRTLHMSLVGVRDISNLE 720

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLK-VVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
             P  R  ++T +      DE+I       LS G + +++  ++++ +            
Sbjct: 721 TPPLDRVAVETKVSRWG--DELIRHAVLRELSRGGQIFFVHNRVQDIELI--------AA 770

Query: 509 SLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            L      + I I HG+M +   E VM  F  G   LL+ATT++E G+D+ +A+ I I+ 
Sbjct: 771 KLQRIVPEAKIGIGHGQMGEGALEKVMTDFIAGKFDLLLATTIVESGLDIPNANTIFIDE 830

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAE 622
           A  +GL++LHQLRGRVGR +  + C +L  P   LS  +  RL  ++       GF I+ 
Sbjct: 831 ANRYGLSELHQLRGRVGRYKHRAYCYMLLQPGRHLSPVAAKRLHAIEEFSHMGAGFAISM 890

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI---LTQDPDLTSVRGQ 679
            DL+ R  G ILG +QSG         EL+  LLE A +  K +   +T D D+    G+
Sbjct: 891 RDLEIRGAGNILGTQQSGHIAT--VGYELYCQLLETAVRRMKRMPSKMTIDVDVDLP-GE 947

Query: 680 SIRILLYLYQYNEAFQFIR 698
           +     Y+    +     R
Sbjct: 948 TYLPDDYVNDMRQKIDLYR 966


>gi|95930005|ref|ZP_01312745.1| transcription-repair coupling factor [Desulfuromonas acetoxidans DSM
            684]
 gi|95133974|gb|EAT15633.1| transcription-repair coupling factor [Desulfuromonas acetoxidans DSM
            684]
          Length = 1158

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 144/480 (30%), Positives = 249/480 (51%), Gaps = 28/480 (5%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++  A  E +A ++  +  R++  +      +    + +      P+  T  Q +
Sbjct: 567  WAKTCQKARAAVEEMARELLTIYARREMAEA--FTFSPPDDVFRSFEAAFPYEETADQMA 624

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+D+L+DM     M R++ GDVG GKT VA+ A   A     Q  ++ P  ILA+QHY 
Sbjct: 625  AIQDVLEDMQSGRPMDRLICGDVGYGKTEVAIRAAFKAALDSKQVAVVVPTTILARQHYA 684

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +      + VE+I+     A +++ L+ +A GQ  ++IGTH L Q  + +  L +V+
Sbjct: 685  TFLERFHGYPVHVEMISRFRSAADQKRVLKELAEGQVDVVIGTHRLLQRDVHFKDLGMVV 744

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV  + +L +      +L ++ATPIPRTL +  +G  D+S I   P  R  I+
Sbjct: 745  IDEEQRFGVSHKERLKKMRAQVAMLTLSATPIPRTLNMGMIGMRDLSIIDTPPVDRLAIR 804

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +  D +   +   L  G + Y++  +++         + E   +L     + IA
Sbjct: 805  TYVTRFDD-DLIRNAILRELQRGGQVYFVHNRVQSIGA-----MAEFLATLVPE--AKIA 856

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M++ + E VM  F  G   +L+A+T+IE G+D+  A+ II+  A+ FGL+QL+QL
Sbjct: 857  VGHGQMAEKELEKVMLGFIEGETNVLVASTIIENGLDIPRANTIIVNRADCFGLSQLYQL 916

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR +      LL      L+K++  RL VL++  +   GF +A  DL+ R  G++L
Sbjct: 917  RGRVGRSKNRGYAYLLIPGEATLTKDARARLQVLQDLTELGAGFRVASHDLELRGAGDLL 976

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ---DPDLTSVRGQSIRILLYLYQYN 691
            G +Q+G    +    E++  LLE   ++ K + ++   DP+        IR+ L+ +  +
Sbjct: 977  GGRQAGQIAAI--GFEMYTELLEETIQELKGMESEGRIDPE--------IRLGLHAFLPD 1026


>gi|215410623|ref|ZP_03419431.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
            94_M4241A]
 gi|298524516|ref|ZP_07011925.1| transcription-repair coupling factor [Mycobacterium tuberculosis
            94_M4241A]
 gi|298494310|gb|EFI29604.1| transcription-repair coupling factor [Mycobacterium tuberculosis
            94_M4241A]
          Length = 1234

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 235/474 (49%), Gaps = 17/474 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +       +AG++  L  ++Q     G   + +     ++     F+ T  Q 
Sbjct: 597  DWANTKTKARRAVREIAGELVSLYAKRQA--SPGHAFSPDTPWQAELEDAFGFTETVDQL 654

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 655  TAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 714

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + ++ ++     A  R  ++ +A G   I+IGTH L Q  +++  L LV
Sbjct: 715  QTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLV 774

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 775  VVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 834

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   ++   L+  L    +A+++  ++             R   L     + +
Sbjct: 835  LTYVGPHDD-KQIAAALRRELLRDGQAFYVHNRVSSIDA-----AAARVRELVPE--ARV 886

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E+ +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 887  VVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 946

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 947  LRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNV 1006

Query: 634  LGIKQSGMPKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            LGI+QSG    +     +      LE  R   +         T+   + +RI L
Sbjct: 1007 LGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDL 1060


>gi|306828591|ref|ZP_07461785.1| transcription-repair coupling factor [Streptococcus mitis ATCC
           6249]
 gi|304429199|gb|EFM32285.1| transcription-repair coupling factor [Streptococcus mitis ATCC
           6249]
          Length = 1167

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 146/452 (32%), Positives = 233/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDEQHAFDDAFPYIE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQVDILIGTHRVLSKDVVFS 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++            + + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTID--------RKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGFVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|281357501|ref|ZP_06243989.1| transcription-repair coupling factor [Victivallis vadensis ATCC
           BAA-548]
 gi|281316104|gb|EFB00130.1| transcription-repair coupling factor [Victivallis vadensis ATCC
           BAA-548]
          Length = 1098

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 141/424 (33%), Positives = 229/424 (54%), Gaps = 15/424 (3%)

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +L ++   +   GI    +    +  LR  PF  T  Q  +  +I +DM     M R+L 
Sbjct: 529 MLRLQAMRQSAPGIVYPPDTAETKAFLRAFPFRDTPDQSRSTAEIRRDMESPRPMDRLLC 588

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT +A+ A   AV AG Q  I+AP  +LAQQHY   ++        +++++   
Sbjct: 589 GDVGYGKTEIAMRAAFKAVSAGYQVAILAPTTVLAQQHYYSFRERFAAYPYTIDVLSRFR 648

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
             A +   ++++  G   I+IGTH L    +++  L LV++DE+ RFGV+ + +L +   
Sbjct: 649 TAAEQNAIMQKVRSGGIDILIGTHRLCNPDLKFRNLGLVVIDEEQRFGVKHKERLRRFRA 708

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              VL M+ATPIPRTL L   G  D+S +   P  R P+KTVI P + + +V + ++  L
Sbjct: 709 EVDVLTMSATPIPRTLYLAMAGARDLSTLMTAPKQRLPVKTVIAPEDEM-QVAQAIRAEL 767

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           + G + Y++  ++   +E       ++  +L     +  A+ HG+M++ + E++M SF  
Sbjct: 768 ARGGQVYYLYNRVRTIEE-----KADKLRALVPE--AKFAVAHGQMNEHELEAIMTSFLE 820

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G    L+ +T+IE G+DV +A+ IIIE A+ FGLA+L+QLRGRVGR    +   +L    
Sbjct: 821 GKIDCLVCSTIIESGLDVPNANTIIIERADRFGLAELYQLRGRVGRWTHQAYAYMLLPKS 880

Query: 600 --LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
             +S ++  RLS ++   N   GF +A  DL+ R  G +LG +QSG    +     L+  
Sbjct: 881 QLVSTDARKRLSAIRRCSNLGAGFQLALHDLEIRGSGNLLGSEQSGHLNSIGFD--LYCQ 938

Query: 655 LLEI 658
           LL+ 
Sbjct: 939 LLKQ 942


>gi|289667201|ref|ZP_06488276.1| transcription-repair coupling factor [Xanthomonas campestris pv.
            musacearum NCPPB4381]
          Length = 1154

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 154/495 (31%), Positives = 244/495 (49%), Gaps = 22/495 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +WT   R+       +A ++  +    + +   G
Sbjct: 531  VAQLHLISRYSGASAETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQA--RRRARAG 588

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ 
Sbjct: 589  LALQVDRAMYEPFAAGFPFEETPDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVR 648

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  I VE+++        +  LE++A
Sbjct: 649  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPIKVEVLSRFKSTKEIKAELEKVA 708

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +IIGTH L Q  +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 709  SGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIP 768

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I   +    + E  +  LS G + Y++   +
Sbjct: 769  RTLNMAMAGLRDLSIIATPPPNRLAVQTFITAWDNT-LLREAFQRELSRGGQLYFLHNDV 827

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +    + L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 828  ESIV-----RMQRDLSELVPE--ARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIE 880

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 881  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEA 940

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  +   
Sbjct: 941  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIRQ-- 996

Query: 668  TQDPDLTSVRGQSIR 682
             + PDL +  G+ +R
Sbjct: 997  GKLPDLDA--GEEVR 1009


>gi|212694030|ref|ZP_03302158.1| hypothetical protein BACDOR_03556 [Bacteroides dorei DSM 17855]
 gi|212663562|gb|EEB24136.1| hypothetical protein BACDOR_03556 [Bacteroides dorei DSM 17855]
          Length = 1145

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 142/467 (30%), Positives = 228/467 (48%), Gaps = 19/467 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  +  L    Q K+E G   + +  +  ++  +  +  T  Q  
Sbjct: 532 WEKMKERTKSKIKDIARDLIKLY--SQRKQEKGFSYSPDSFMQHELEASFIYEDTPDQLK 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D   DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 590 ATQDAKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVTDNKQVAVLVPTTVLAYQHFQ 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++    V+ ++         + ++ +A G+ +I+IGTH +   S+++  L L+I
Sbjct: 650 TFSERLKDFPCKVDYLSRARSTKDVSRIVKELADGKINILIGTHKIIGKSVKFKDLGLLI 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 710 IDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 769

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  D + E +   +S   + +++  +I+   E                    + 
Sbjct: 770 TEVHTFNE-DIITEAINFEMSRNGQVFFVNNRIQNLVELEAMIK-------RNIPDCRVC 821

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 822 IGHGQMEPEKLEKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 881

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 882 RGRVGRSNKKAFCYLLAPPLTSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 941

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           G +QSG    L    E +  +L  A K+ K    +  DL +   Q+ 
Sbjct: 942 GAEQSGFIADL--GYETYQKILAEAVKELKE--DEFADLYAEELQAA 984


>gi|297622390|ref|YP_003703824.1| transcription-repair coupling factor [Truepera radiovictrix DSM
           17093]
 gi|297163570|gb|ADI13281.1| transcription-repair coupling factor [Truepera radiovictrix DSM
           17093]
          Length = 1006

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 156/494 (31%), Positives = 249/494 (50%), Gaps = 21/494 (4%)

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEI 251
            L  +  P +        +P +         AR R  A        + L+    + + + 
Sbjct: 392 YLPVEQLPLLRRHPGTTDDPPRLSTLGTNEWARARERARVGAQELALKLIRTYAERQLQQ 451

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G+ +    +    I  N PF  T  Q+SA + +L DM++   M R++ GDVG GKT VA+
Sbjct: 452 GLAMPANPEWDPLIDENCPFELTPDQKSATQAVLHDMARPVPMDRLISGDVGFGKTEVAI 511

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   AV  G Q  ++ P  +LA+QH+E   +      ++VE+++        R  L  +
Sbjct: 512 RAAHRAVGHGKQVAMLVPTTVLAKQHFETFAERFAGLPVVVELLSRFSTDKEARDILAGL 571

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G   ++IGTH L  + + +  L L+IVDE+HRFGV Q+ ++        VL ++ATPI
Sbjct: 572 KAGTIDVVIGTHRLLSEEVAFKDLGLLIVDEEHRFGVGQKERMKAMKANLDVLSLSATPI 631

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL ++ +G  D+S+I   PAGRKPI+TV+ P + +    E +   L  G K ++I  +
Sbjct: 632 PRTLYMSLVGLRDVSQIMTPPAGRKPIQTVLQPFDPM-VAREAVMFELERGGKVFYIHDR 690

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +                 L     + I + HG+MS  + E VM +F+ G   +L+ATT++
Sbjct: 691 VGSMGAKAL-----WLQKLVPE--ARIGVAHGQMSGDELEEVMLNFQGGAYDVLLATTIV 743

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           E G+DV  A+ ++IE A+  GLAQL+QLRGRVGR    +   LLY   L++ +  RL  L
Sbjct: 744 ESGLDVAGANTLLIERADKLGLAQLYQLRGRVGRRSTEAWAYLLYPGRLTEGAQRRLFAL 803

Query: 612 KNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL--EIAR-----K 661
               D   G L+AE+D++ R  G +LG +Q G         E++  +L  EIA+     +
Sbjct: 804 AELNDLGSGHLLAEKDMEIRGVGNLLGPEQHGHIS--AVSLEVYTEMLAEEIAKLKGETQ 861

Query: 662 DAKHILTQDPDLTS 675
           +A   +  D +L +
Sbjct: 862 EAPQAVAIDLNLDA 875


>gi|84687524|ref|ZP_01015400.1| transcription-repair coupling factor [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664433|gb|EAQ10921.1| transcription-repair coupling factor [Rhodobacterales bacterium
           HTCC2654]
          Length = 1153

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 134/445 (30%), Positives = 230/445 (51%), Gaps = 17/445 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +           +A ++  L   +  +K     +       ++     P++ T  Q S
Sbjct: 548 WQAKKARLKERIREVADKLIRLAAERSLRKAPV--MEAPHHAWEEFAARFPYTETDDQLS 605

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI D+++DMS  + M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA+QHY+
Sbjct: 606 AIADVIEDMSAGSPMDRLICGDVGFGKTEVAMRAAFVAALSGKQVAVIAPTTLLARQHYK 665

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +   I V  ++  + Q    +  E +  G   I++GTHAL     ++  L L++
Sbjct: 666 SFAERFRGFPIQVSQLSRFVSQGEANRTREGMKDGTVDIVVGTHALLAKGTRFKDLGLLV 725

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV  + +L +  +  HVL ++ATPIPRTL ++  G  D+S I   P  R  I+
Sbjct: 726 IDEEQRFGVSHKERLKELRSDVHVLTLSATPIPRTLQMSLTGVRDLSIIGTPPVDRLSIR 785

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  + E L      G +++ + P++++ +E       +           S  
Sbjct: 786 TYVSEFDTV-TIREALLREHYRGGQSFVVVPRVKDLREIEEFLETQV-------PEVSFV 837

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             +G+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++  A+ FGLAQL+Q+
Sbjct: 838 TANGQMAAGELDHRMNAFYDGKFDVLVATTIVESGLDIPTANTMVVWRADMFGLAQLYQI 897

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR +  + C L   P  PL+  +  RL VL + +    GF +A +DL  R  G +L
Sbjct: 898 RGRVGRSKTRAYCYLTTKPRVPLTPGAEKRLKVLGSLDSLGAGFALASQDLDIRGAGNLL 957

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIA 659
           G +QSG         EL+  +LE A
Sbjct: 958 GEEQSGNMN--EVGYELYQHMLEEA 980


>gi|189346300|ref|YP_001942829.1| transcription-repair coupling factor [Chlorobium limicola DSM 245]
 gi|189340447|gb|ACD89850.1| transcription-repair coupling factor [Chlorobium limicola DSM 245]
          Length = 1116

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 135/459 (29%), Positives = 233/459 (50%), Gaps = 17/459 (3%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P  +K       A++     ++    I L+ +  +   + G     +    ++   +  F
Sbjct: 479 PSLSKLGSSKWAAKKEKVRKKIRDIAINLIRLYAERTMKPGFAFCADTIFMREFEASFIF 538

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q  AI+++  DM + + M R++ GD G GKT +A+ A   AVE+  Q  I+ P  
Sbjct: 539 EETPDQLKAIEEVKADMQKPHPMDRLICGDAGFGKTEIAMRAAFKAVESRKQVAILTPTT 598

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA QH E  ++   N  + + +++  +P+  + + +E+I +G   I+IGTH L    ++
Sbjct: 599 ILAHQHLESFERRFANFPVSITVLSRFIPKKEQLERIEKIENGAIDIVIGTHRLVSKDVR 658

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+I+DE+  FGV+ + KL         L M+ATPIPRTL  + LG  D+S ++  
Sbjct: 659 FRDLGLLIIDEEQHFGVEVKEKLRVSHPEVDTLTMSATPIPRTLQFSMLGARDLSIVSTP 718

Query: 452 PAGRKPIKTVIIPINRIDEVIE-RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           P  R+P++T I   + +  +I+  ++  +    + +++  +I   +E            L
Sbjct: 719 PKNRQPVETSISDYDPV--LIQLAIQREIQRDGQVFFLHNRISGLEEIQH-----ILREL 771

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             +  + I   HG+M   + E VM  F      +LI+T++I  G+D+ +A+ III  A+ 
Sbjct: 772 VPY--ARIVYAHGQMPSKELEKVMMDFMQKEVDVLISTSIIGSGLDISNANTIIINRADM 829

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
           FGLA L+QLRGRVGR E  + C ++  P   L + +  RL+V+++  +   GF +A  DL
Sbjct: 830 FGLADLYQLRGRVGRSERKAFCYMIAPPIHTLKREAVQRLAVIESFTELGAGFTVALRDL 889

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             R  G +LG +QSG    L     L+  +LE    + K
Sbjct: 890 DIRGAGNLLGAEQSGFIHELGFD--LYQKMLEETVAELK 926


>gi|265751112|ref|ZP_06087175.1| transcription-repair coupling factor [Bacteroides sp. 3_1_33FAA]
 gi|263238008|gb|EEZ23458.1| transcription-repair coupling factor [Bacteroides sp. 3_1_33FAA]
          Length = 1121

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 142/467 (30%), Positives = 228/467 (48%), Gaps = 19/467 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  +  L    Q K+E G   + +  +  ++  +  +  T  Q  
Sbjct: 508 WEKMKERTKSKIKDIARDLIKLY--SQRKQEKGFSYSPDSFMQHELEASFIYEDTPDQLK 565

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D   DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 566 ATQDAKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVTDNKQVAVLVPTTVLAYQHFQ 625

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++    V+ ++         + ++ +A G+ +I+IGTH +   S+++  L L+I
Sbjct: 626 TFSERLKDFPCKVDYLSRARSTKDVSRIVKELADGKINILIGTHKIIGKSVKFKDLGLLI 685

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 686 IDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 745

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  D + E +   +S   + +++  +I+   E                    + 
Sbjct: 746 TEVHTFNE-DIITEAINFEMSRNGQVFFVNNRIQNLVELEAMIK-------RNIPDCRVC 797

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 798 IGHGQMEPEKLEKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 857

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 858 RGRVGRSNKKAFCYLLAPPLTSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 917

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           G +QSG    L    E +  +L  A K+ K    +  DL +   Q+ 
Sbjct: 918 GAEQSGFIADL--GYETYQKILAEAVKELKE--DEFADLYAEELQAA 960


>gi|170077902|ref|YP_001734540.1| transcription-repair coupling factor [Synechococcus sp. PCC 7002]
 gi|169885571|gb|ACA99284.1| Transcription-repair coupling factor (TRCF) [Synechococcus sp. PCC
           7002]
          Length = 1162

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 139/444 (31%), Positives = 234/444 (52%), Gaps = 21/444 (4%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
           + A+ R +  +L    + +   R + K         +    Q++  + P+  T  Q  A+
Sbjct: 567 TKAKVRKSVKKLAVDLLKIYAQRAEMKGITYPS---DAPWQQEMEDSFPYQATPDQLKAV 623

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIGILAQQHYEF 340
           +DI +D+     M R++ GDVG GKT VA+ A+   V  G  Q  ++AP  IL QQHY  
Sbjct: 624 QDIKRDLESDRPMDRLVCGDVGFGKTEVAIRAIFKVVTGGHKQVALLAPTTILTQQHYHT 683

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
           +K+      I + ++      + R+  LER+  G+  I++GT  L    +Q+  L L++V
Sbjct: 684 LKERFSPYPINIGLLNRFRTASERKDILERLHKGELDIVVGTQQLLGKDVQFKDLGLLVV 743

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+ RFGV Q+ K+    T   VL ++ATPIPRTL ++  G  ++S IT  P  R+PI+T
Sbjct: 744 DEEQRFGVNQKEKIKALKTKVDVLTLSATPIPRTLYMSLSGIREMSLITTPPPSRRPIQT 803

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIA 519
            +   N  + +   ++  L  G + +++ P++E  +             L E    + +A
Sbjct: 804 HVSRHN-PEIIRTAIRNELDRGGQIFYVVPRVEGIETI--------ATQLQEMIPSARVA 854

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M++ D E+ M +F NG   +L+ TT++E G+D+   + II+E+A+ FGL+QL+QL
Sbjct: 855 IAHGQMNEADLETTMLTFNNGEADILLCTTIVESGLDIPRVNTIIVEDAQKFGLSQLYQL 914

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGR    +   LLY     L++ +  RL  L+       G+ +A  D++ R  G +L
Sbjct: 915 RGRVGRSGIQAHAWLLYPSKGELTEKARKRLRALQEFSQLGSGYQLAMRDMEIRGVGNLL 974

Query: 635 GIKQSGMPKFLIAQPELHDSLLEI 658
           G +QSG  + +     L+  +L+ 
Sbjct: 975 GAEQSGQMEAIGFD--LYMEMLQD 996


>gi|237727824|ref|ZP_04558305.1| transcription-repair coupling factor [Bacteroides sp. D4]
 gi|229434680|gb|EEO44757.1| transcription-repair coupling factor [Bacteroides dorei 5_1_36/D4]
          Length = 1121

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 142/467 (30%), Positives = 228/467 (48%), Gaps = 19/467 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  +  L    Q K+E G   + +  +  ++  +  +  T  Q  
Sbjct: 508 WEKMKERTKSKIKDIARDLIKLY--SQRKQEKGFSYSPDSFMQHELEASFIYEDTPDQLK 565

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D   DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 566 ATQDAKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVTDNKQVAVLVPTTVLAYQHFQ 625

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++    V+ ++         + ++ +A G+ +I+IGTH +   S+++  L L+I
Sbjct: 626 TFSERLKDFPCKVDYLSRARSTKDVSRIVKELADGKINILIGTHKIIGKSVKFKDLGLLI 685

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 686 IDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 745

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  D + E +   +S   + +++  +I+   E                    + 
Sbjct: 746 TEVHTFNE-DIITEAINFEMSRNGQVFFVNNRIQNLVELEAMIK-------RNIPDCRVC 797

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 798 IGHGQMEPEKLEKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 857

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 858 RGRVGRSNKKAFCYLLAPPLASLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 917

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           G +QSG    L    E +  +L  A K+ K    +  DL +   Q+ 
Sbjct: 918 GAEQSGFIADL--GYETYQKILAEAVKELKE--DEFADLYAEELQAA 960


>gi|311743167|ref|ZP_07716975.1| transcription-repair coupling factor [Aeromicrobium marinum DSM
            15272]
 gi|311313847|gb|EFQ83756.1| transcription-repair coupling factor [Aeromicrobium marinum DSM
            15272]
          Length = 1169

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 142/487 (29%), Positives = 240/487 (49%), Gaps = 33/487 (6%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT+   +       +AG++  L   +Q     G     +     ++     +  T  Q 
Sbjct: 575  DWTNRKNKARKAVRQIAGELIKLYAARQS--TQGHAFGPDTPWQAELEDAFAYVETPDQL 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S I+++ +DM +   M R++ GDVG GKT +A+ A   A++ G Q +++ P  +L QQHY
Sbjct: 633  STIEEVKRDMERVVPMDRLVCGDVGYGKTEIAVRAAFKAIQDGKQVILLVPTTLLVQQHY 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + +  ++    ++  +  LE +A G   ++IGTH L Q  ++   L LV
Sbjct: 693  ATFAERFGQFPVSIRPLSRFQTESESKATLEALAEGSVDLVIGTHRLLQPGVRIKDLGLV 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L     A  VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 753  IVDEEQRFGVEHKEALKHLRAAVDVLSMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             + + P     +V+  ++  L    +A++I  +++          V R   L       +
Sbjct: 813  LSFVGPYEDR-QVVAAIRRELLREGQAFYIHNRVQSID-----KAVARLRQLVPEV--RV 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E VM  F      +L+ TT++E G+DV +A+ +IIE ++  GL+QLHQ
Sbjct: 865  AAAHGQMSEAQLEQVMLDFWEKRYDVLVCTTIVESGLDVSNANTMIIERSDTLGLSQLHQ 924

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 925  LRGRVGRGSERAYAYFLYPPDKPLTETAHDRLATIAQHSELGGGMAVAMKDLEIRGAGNL 984

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD--------------LTSVRGQ 679
            LG +QSG    +     L+  L+  A  + +     +P+              LT +  +
Sbjct: 985  LGGEQSGHIADVGFD--LYVRLVGEAVAEFRG--EAEPEREVRIELPIEAHLPLTYLPSE 1040

Query: 680  SIRILLY 686
             +R+ +Y
Sbjct: 1041 RLRLEMY 1047


>gi|315499869|ref|YP_004088672.1| transcription-repair coupling factor [Asticcacaulis excentricus CB
            48]
 gi|315417881|gb|ADU14521.1| transcription-repair coupling factor [Asticcacaulis excentricus CB
            48]
          Length = 1168

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 155/499 (31%), Positives = 256/499 (51%), Gaps = 27/499 (5%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
            DLL +    S     + +           +  AR+  A ++L      L+ +      ++
Sbjct: 548  DLLTRYGADSDTTQLDRLG--------SASWQARKAKAKEKLREMADGLIQLAAARALKV 599

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            G  I+    +  +     P+  T+ Q +AI D+L D+S+ + M R++ GDVG GKT VAL
Sbjct: 600  GQQIDPPSGLYDEFCAQFPYEETEDQLNAIHDVLDDLSKGHPMDRLICGDVGFGKTEVAL 659

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             A      +G Q  I+ P  +LA+QH++   +  Q   I V  ++  + +    +  + +
Sbjct: 660  RAAFVVAMSGQQVAIICPTTLLARQHFKTFSQRFQGWPIRVRHLSRMVTRKEADETRDGL 719

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
              G+  ++IGTHAL  + + +  L LVIVDE+  FGV+ + KL       H+L ++ATPI
Sbjct: 720  KSGEVEVVIGTHALLSEQVGFKDLGLVIVDEEQHFGVKHKEKLKAFRADVHMLTLSATPI 779

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            PRTL +   G  ++S I   P  R  ++T ++P + +  + E L      G +AY++ P+
Sbjct: 780  PRTLQMALSGIREMSIIATPPVDRLAVRTYVLPFDAVS-IREALLREKYRGGQAYYVVPR 838

Query: 492  IEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +++  +      +ERF  L E        + HG+M+    E VM +F +G   +L+ATT+
Sbjct: 839  LKDLPD------LERF--LREQVPEVKFIVGHGQMTPTQLEEVMTAFYDGQYDVLLATTI 890

Query: 551  IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL 608
            +E G+DV  A+ +I+  A+ FGLAQL+Q+RGRVGR +  +   L   P   LS+ S  RL
Sbjct: 891  VESGLDVPTANTLIVHRADMFGLAQLYQIRGRVGRSKTRAFAYLTTQPHQILSEASEKRL 950

Query: 609  SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             VL++ ++   GF +A  DL  R  G +LG +QSG  + +    EL+  +LE A  + + 
Sbjct: 951  KVLQSLDNLGAGFQLASHDLDIRGGGNLLGNEQSGHIREI--GVELYQQMLEDAVNELRS 1008

Query: 666  ILTQDPDLTSVRGQSIRIL 684
                D   T  RG S +I 
Sbjct: 1009 --RADEPATDNRGWSPQIN 1025


>gi|291541698|emb|CBL14808.1| transcription-repair coupling factor [Ruminococcus bromii L2-63]
          Length = 1152

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 134/462 (29%), Positives = 229/462 (49%), Gaps = 21/462 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +A ++  L    Q  K  G   + + +  +    +  +  T  Q 
Sbjct: 566  DWQKAKARVKTSVKDIAKELIELY--SQRMKAKGYAFSADNEWQRDFELSFEYDETPDQL 623

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
               ++I  DM + + M R+L GDVG GKT VAL A    +    Q  ++ P  ILA QHY
Sbjct: 624  RCCEEIKHDMMRSSPMDRLLCGDVGFGKTEVALRAAFKCIADSKQCALLCPTTILAWQHY 683

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + + K  +   + VE+++       +++ L+++  G+  +I+GTH L Q  +++  L L 
Sbjct: 684  QTVIKRFEGYPVRVELLSRFRTAKQQKEILQKLKRGEIDMIVGTHRLVQKDVEFRDLGLA 743

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV Q+ +  +      VL ++ATPIPRTL +   G  D+S I E P  R+P+
Sbjct: 744  IIDEEQRFGVAQKERFKELCKNVDVLTLSATPIPRTLNMAMSGLRDMSVIEEAPTNRQPV 803

Query: 459  KTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            +T ++  +  D VI E ++  L  G + +++   +E       +              + 
Sbjct: 804  QTYVLEHD--DAVINEAIRRELRRGGQVFYLHNNVETISSCAAKIQEAV-------PEAK 854

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IAI HG+M + +   V          +L+ TT+IE G+D+ +A+ +IIENA+  GL+QLH
Sbjct: 855  IAIGHGKMKEGELSEVWRQMLEQEIDVLVCTTIIETGVDLPNANTLIIENADCMGLSQLH 914

Query: 578  QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            QLRGRVGR    +     +  +  L++    RL+ ++       GF IA  DL+ R  G 
Sbjct: 915  QLRGRVGRSSRRAYAYFTFRRNKVLTEIQQKRLAAIREFTEFGSGFRIAMRDLELRGAGN 974

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKD--AKHILTQDPD 672
            I+G +Q G  + +     ++  LL+ A  +   +  +T+D D
Sbjct: 975  IMGAQQHGHMESVGYD--MYLKLLDEAVSEEKGEQNVTKDLD 1014


>gi|289664638|ref|ZP_06486219.1| transcription-repair coupling factor [Xanthomonas campestris pv.
            vasculorum NCPPB702]
          Length = 1154

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 154/495 (31%), Positives = 244/495 (49%), Gaps = 22/495 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +WT   R+       +A ++  +    + +   G
Sbjct: 531  VAQLHLISRYSGASAETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQA--RRRARAG 588

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ 
Sbjct: 589  LALQVDRAMYEPFAAGFPFEETPDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVR 648

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  I VE+++        +  LE++A
Sbjct: 649  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPIKVEVLSRFKSTKEIKAELEKVA 708

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +IIGTH L Q  +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 709  SGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIP 768

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I   +    + E  +  LS G + Y++   +
Sbjct: 769  RTLNMAMAGLRDLSIIATPPPNRLAVQTFITAWDNT-LLREAFQRELSRGGQLYFLHNDV 827

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +    + L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 828  ESIV-----RMQRDLSELVPE--ARIGIAHGQMPERELEQVMLDFQKQRFNVLLSTTIIE 880

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 881  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEA 940

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  +   
Sbjct: 941  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIRQ-- 996

Query: 668  TQDPDLTSVRGQSIR 682
             + PDL +  G+ +R
Sbjct: 997  GKLPDLDA--GEEVR 1009


>gi|327335135|gb|EGE76846.1| transcription-repair coupling factor [Propionibacterium acnes
            HL097PA1]
          Length = 1208

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 230/489 (47%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 599  DWRKRKARARKAVREIAAELIKLYAARQA--TKGHAFGPDTAWQRELEDAFAYVETPDQL 656

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 657  TTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 716

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 717  QTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEVEFKDLGLV 776

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 777  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 836

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +         +   L     + I
Sbjct: 837  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIE-----KTAAKLRELVPE--ARI 888

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 889  VTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQ 948

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 949  LRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNL 1008

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 1009 LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETE 1066

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1067 RLRLEMYKR 1075


>gi|314982388|gb|EFT26481.1| transcription-repair coupling factor [Propionibacterium acnes
            HL110PA3]
 gi|315092571|gb|EFT64547.1| transcription-repair coupling factor [Propionibacterium acnes
            HL110PA4]
          Length = 1208

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 230/489 (47%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 599  DWRKRKARARKAVREIATELIKLYAARQA--TKGHAFGPDTAWQRELEDAFAYVETPDQL 656

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 657  TTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 716

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 717  QTFTERYAGFPVKVAALSRFQTDTEARETLEGLKRGTVDVVVGTHRLLAKEVEFKDLGLV 776

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 777  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 836

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +         +   L     + I
Sbjct: 837  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIE-----KTAAKLRELVPE--ARI 888

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 889  VTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQ 948

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 949  LRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNL 1008

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 1009 LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETE 1066

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1067 RLRLEMYKR 1075


>gi|319789291|ref|YP_004150924.1| transcription-repair coupling factor [Thermovibrio ammonificans
           HB-1]
 gi|317113793|gb|ADU96283.1| transcription-repair coupling factor [Thermovibrio ammonificans
           HB-1]
          Length = 1058

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 152/460 (33%), Positives = 245/460 (53%), Gaps = 17/460 (3%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P+  K    +    ER     L+     L  + K+ K  +G  +  +  + ++  R  P+
Sbjct: 473 PKLDKLGGTSWKNLERRVKASLVKFAKELAQLYKERKSAVGERLKGDEALLREFERRFPY 532

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q  AI+++ +DM  +  M R++ GDVG GKT VA+ A   AV +G Q  ++AP  
Sbjct: 533 RLTPDQSKAIREVYRDMESERPMDRLICGDVGFGKTEVAMRAAMKAVTSGKQVAVIAPTT 592

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LA QHY   +K  +   + +E+++    +  +R+ LE++  G+  I+IGTH L QD ++
Sbjct: 593 VLADQHYRTFRKRFKGFPVKIEMLSRFKSKKEQREILEKLKRGEVDIVIGTHRLTQDDVE 652

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+I+DE+HRFGV+ + KLT+  +   VL ++ATPIPRTL     G  DIS I   
Sbjct: 653 FKDLGLLIIDEEHRFGVKTKEKLTKLKSNIDVLYLSATPIPRTLYSALSGFRDISLIETP 712

Query: 452 PAGRKPIKTVIIPINRIDEVIE-RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           PAGR+  K V+   +  DE+ +  ++  L+ G + + +   I + +E       E+   L
Sbjct: 713 PAGRRGTKVVVSRYS--DELFKAAIERELARGGQVFIVQNDISKLEEIK-----EKVERL 765

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  + ++HG+M     E VM  F  G  ++L++T ++E G+DV  A+ +I+  AE 
Sbjct: 766 FPGV--KVGVVHGQMRSSQIEKVMHQFFEGELQVLVSTAIVESGLDVPTANTLIVIGAER 823

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN---TEDGFLIAEEDL 625
           FGL+QL+QL+GRVGRG E   C L   P   L+  +  RL  +K       GF +A +DL
Sbjct: 824 FGLSQLYQLKGRVGRGVEKGYCYLFTTPGVKLTAEAVKRLEAMKKLAPLGGGFRLALKDL 883

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           + R  G +LG KQSG  +      +L+  L E   K+ + 
Sbjct: 884 EIRGAGTLLGPKQSGFVE--SVGLDLYMKLFEEVAKEQEE 921


>gi|282853612|ref|ZP_06262949.1| transcription-repair coupling factor [Propionibacterium acnes J139]
 gi|282583065|gb|EFB88445.1| transcription-repair coupling factor [Propionibacterium acnes J139]
          Length = 1209

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 230/489 (47%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 600  DWRKRKARARKAVREIATELIKLYAARQA--TKGHAFGPDTAWQRELEDAFAYVETPDQL 657

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 658  TTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 717

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 718  QTFTERYAGFPVKVAALSRFQTDTEARETLEGLKRGTVDVVVGTHRLLAKEVEFKDLGLV 777

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 778  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 837

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +         +   L     + I
Sbjct: 838  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIE-----KTAAKLRELVPE--ARI 889

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 890  VTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQ 949

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 950  LRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNL 1009

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 1010 LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETE 1067

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1068 RLRLEMYKR 1076


>gi|294778383|ref|ZP_06743806.1| transcription-repair coupling factor [Bacteroides vulgatus PC510]
 gi|294447645|gb|EFG16222.1| transcription-repair coupling factor [Bacteroides vulgatus PC510]
          Length = 1145

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 141/467 (30%), Positives = 228/467 (48%), Gaps = 19/467 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  +  L    Q K+E G   + +  +  ++  +  +  T  Q  
Sbjct: 532 WEKMKERTKSKIKDIARDLIRLY--SQRKQEKGFSYSPDSFMQHELEASFIYEDTPDQLK 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D   DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 590 ATQDAKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++    V+ ++         + ++ +A G+ +I++GTH +   S+++  L L+I
Sbjct: 650 TFSERLKDFPCKVDYLSRARSAKDVSRIVKELADGKINILVGTHKIIGKSVKFKDLGLLI 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 710 IDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 769

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  D + E +   +S   + +++  +I+   E                    + 
Sbjct: 770 TEVHTFNE-DIITEAINFEMSRNGQVFFVNNRIQNLVELESMIK-------RNIPDCRVC 821

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 822 IGHGQMEPEKLEKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 881

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 882 RGRVGRSNKKAFCYLLAPPLTSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 941

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           G +QSG    L    E +  +L  A K+ K    +  DL +   Q+ 
Sbjct: 942 GAEQSGFIADL--GYETYQKILAEAVKELKE--DEFADLYAEELQAA 984


>gi|150004807|ref|YP_001299551.1| transcription-repair coupling factor [Bacteroides vulgatus ATCC
           8482]
 gi|319641987|ref|ZP_07996654.1| transcription-repair coupling factor [Bacteroides sp. 3_1_40A]
 gi|149933231|gb|ABR39929.1| transcription-repair coupling factor [Bacteroides vulgatus ATCC
           8482]
 gi|317386412|gb|EFV67324.1| transcription-repair coupling factor [Bacteroides sp. 3_1_40A]
          Length = 1121

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 141/467 (30%), Positives = 228/467 (48%), Gaps = 19/467 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  +  L    Q K+E G   + +  +  ++  +  +  T  Q  
Sbjct: 508 WEKMKERTKSKIKDIARDLIRLY--SQRKQEKGFSYSPDSFMQHELEASFIYEDTPDQLK 565

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D   DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 566 ATQDAKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 625

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++    V+ ++         + ++ +A G+ +I++GTH +   S+++  L L+I
Sbjct: 626 TFSERLKDFPCKVDYLSRARSAKDVSRIVKELADGKINILVGTHKIIGKSVKFKDLGLLI 685

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 686 IDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 745

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  D + E +   +S   + +++  +I+   E                    + 
Sbjct: 746 TEVHTFNE-DIITEAINFEMSRNGQVFFVNNRIQNLVELEAMIK-------RNIPDCRVC 797

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 798 IGHGQMEPEKLEKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 857

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 858 RGRVGRSNKKAFCYLLAPPLTSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 917

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           G +QSG    L    E +  +L  A K+ K    +  DL +   Q+ 
Sbjct: 918 GAEQSGFIADL--GYETYQKILAEAVKELKE--DEFADLYAEELQAA 960


>gi|254882671|ref|ZP_05255381.1| transcription-repair coupling factor [Bacteroides sp. 4_3_47FAA]
 gi|254835464|gb|EET15773.1| transcription-repair coupling factor [Bacteroides sp. 4_3_47FAA]
          Length = 1145

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 141/467 (30%), Positives = 228/467 (48%), Gaps = 19/467 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  +  L    Q K+E G   + +  +  ++  +  +  T  Q  
Sbjct: 532 WEKMKERTKSKIKDIARDLIRLY--SQRKQEKGFSYSPDSFMQHELEASFIYEDTPDQLK 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D   DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 590 ATQDAKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  ++    V+ ++         + ++ +A G+ +I++GTH +   S+++  L L+I
Sbjct: 650 TFSERLKDFPCKVDYLSRARSAKDVSRIVKELADGKINILVGTHKIIGKSVKFKDLGLLI 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 710 IDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 769

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  D + E +   +S   + +++  +I+   E                    + 
Sbjct: 770 TEVHTFNE-DIITEAINFEMSRNGQVFFVNNRIQNLVELEAMIK-------RNIPDCRVC 821

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 822 IGHGQMEPEKLEKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 881

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 882 RGRVGRSNKKAFCYLLAPPLTSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 941

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           G +QSG    L    E +  +L  A K+ K    +  DL +   Q+ 
Sbjct: 942 GAEQSGFIADL--GYETYQKILAEAVKELKE--DEFADLYAEELQAA 984


>gi|114570035|ref|YP_756715.1| transcription-repair coupling factor [Maricaulis maris MCS10]
 gi|114340497|gb|ABI65777.1| transcription-repair coupling factor [Maricaulis maris MCS10]
          Length = 1172

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 144/467 (30%), Positives = 234/467 (50%), Gaps = 19/467 (4%)

Query: 199  FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258
              S   A +      K     W +   +       +A Q+  +   +  +K    PI   
Sbjct: 549  LLSRYGAESETAQLDKLGGVAWQARKAKAKKRLRDMADQLIKIAAERLARKAE--PIETS 606

Query: 259  GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
                 +     P+  T  Q +AI D+L D+ +   M R++ GDVG GKT VAL A     
Sbjct: 607  SGAFDEFCSTFPYPETDDQLNAIDDVLTDLGRGRPMDRLICGDVGFGKTEVALRAAFVVA 666

Query: 319  EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             +G Q  I+AP  +LA+QH++      +   + V +++  +     +   + +A GQ  I
Sbjct: 667  LSGQQVAIVAPTTLLARQHFKTFSDRFRGWPVKVRLLSRLVTAKEAKATRDELAAGQVEI 726

Query: 379  IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            +IGTHAL   ++++  L L++VDE+  FGV+ + +L +  +  HVL +TATPIPRTL L 
Sbjct: 727  VIGTHALLAKTVKFRDLGLLVVDEEQHFGVKHKERLKELRSDVHVLTLTATPIPRTLQLA 786

Query: 439  SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
              G  D+S I   P  R  ++T + P + +  V E L      G +A+++ P+I + +  
Sbjct: 787  LTGIRDLSIIATPPVDRLAVRTYVAPFDPVS-VREALLREKYRGGQAFFVVPRITDLE-- 843

Query: 499  NFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                  E    L E     S    HG+M+    E +M +F  G   +L++TT++E GID+
Sbjct: 844  ------ETTRFLRESVPEVSFVAAHGQMAASQLEDIMTAFYEGRYDVLLSTTIVESGIDI 897

Query: 558  VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE 615
              A+ +II  A+ FGL+QL+QLRGRVGR +  +   L       +++++  RL V+++ +
Sbjct: 898  PTANTLIIHRADRFGLSQLYQLRGRVGRSKTRAYAYLTTPMRQKITESAEKRLKVMQSLD 957

Query: 616  D---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
                GF +A  DL  R  G +LG +QSG  +      EL+ S+LE A
Sbjct: 958  SLGAGFTLASHDLDLRGGGNLLGEEQSGHIRD--VGVELYQSMLEEA 1002


>gi|325853962|ref|ZP_08171478.1| transcription-repair coupling factor [Prevotella denticola CRIS
            18C-A]
 gi|325484299|gb|EGC87229.1| transcription-repair coupling factor [Prevotella denticola CRIS
            18C-A]
          Length = 1175

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 151/584 (25%), Positives = 269/584 (46%), Gaps = 34/584 (5%)

Query: 100  EITLLFFYRKT---EMLKNVFFEGRKITVTGKIKKLKNRIIMVHP-HYIFHNSQDVNFPL 155
             + + FF          K      +     GK+      +  + P  ++ H   D     
Sbjct: 440  TLKVCFFTDHQIFDRFHKYNLKSDKARQ--GKMALTMKELQEMEPGDFLVHV--DFGIGK 495

Query: 156  IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
               +  +P G S     +++ +    + V    + K  + K       E           
Sbjct: 496  FAGLVRVPAGDSYQEMIRLVYQHNDIVDVSIHSLYK--ISKYRRSDTGE----PPRLSVL 549

Query: 216  KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
                W     +     + +A  +  L  +++ +   G   + +  +  ++  +  +  T 
Sbjct: 550  GSGAWDRLKEKAKKRIKDIARDLIKLYAKRRRE--KGFAFSPDSFMQHELEASFLYEDTP 607

Query: 276  SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
             Q  A +++ QDM     M R++ GDVG GKT VA+ A   A     Q  ++ P  +LA 
Sbjct: 608  DQLKATQELKQDMESARPMDRLVCGDVGFGKTEVAIRAAFKAAVDNKQVAVLVPTTVLAF 667

Query: 336  QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
            QHY+  KK  ++  + V+ ++        R+ L  +A G+ +I++GTH L   S+++  L
Sbjct: 668  QHYQTFKKRLKDMPVRVDYLSRARSARQTRQVLADLAEGKINILVGTHKLIGKSVKWNDL 727

Query: 396  ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
             L+I+DE+ +FGV  + KL Q  T    L M+ATPIPRTL  + +G  D+S +   P  R
Sbjct: 728  GLLIIDEEQKFGVSTKEKLRQLKTNVDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNR 787

Query: 456  KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             PI+T I   +  + + + +   +S   + Y++  +I   +        E  N + ++  
Sbjct: 788  YPIQTEIATFSH-EVIADAINFEMSRNGQVYFVNDRISNLQ--------EIANLIRKYVP 838

Query: 516  S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               +AI HG+M   + E ++  F N    +L++TT++E GID+ +A+ III +A  FGL+
Sbjct: 839  DCRVAIGHGQMKPEELEKIVMGFMNYDYDVLLSTTIVENGIDISNANTIIINDAHRFGLS 898

Query: 575  QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
             LHQ+RGRVGR  + + C LL  P   L+  +  RL  L+   D   GF +A +DL  R 
Sbjct: 899  DLHQMRGRVGRSNKKAFCYLLAPPLAALNTEARRRLEALETFSDLGSGFNLAMQDLDIRG 958

Query: 630  EGEILGIKQSGMPKFL---IAQPELHDSLLEIARKDAKHILTQD 670
             G +LG +QSG  + L     Q  L+ +++E+   + + +  ++
Sbjct: 959  AGNLLGSEQSGFMEDLGYETYQKILNQAVMELKNDEFQDLYAEE 1002


>gi|329769841|ref|ZP_08261241.1| hypothetical protein HMPREF0433_01005 [Gemella sanguinis M325]
 gi|328838017|gb|EGF87639.1| hypothetical protein HMPREF0433_01005 [Gemella sanguinis M325]
          Length = 653

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 247/468 (52%), Gaps = 21/468 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +     E ++  +  L ++++     G   +++G +  +   + PF PT  Q  
Sbjct: 26  WQQVKNKVRREIEDISEDLIKLYIKREL--SSGYAYSLDGSMQYEFEADFPFVPTDDQLK 83

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A ++I +DM ++  M R+L GDVG GKT VA+     AV  G Q  ++ P  +LA+QHY+
Sbjct: 84  ATEEIKRDMEKERPMDRLLCGDVGFGKTEVAMRVAFKAVMDGKQVAVLVPTTLLAEQHYD 143

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                 +N  I +E+++            +R+  G+  I+IGTH L  D   Y  L L+I
Sbjct: 144 NFVNRFENFPINIEVVSRFNTAKDITNICKRLKEGKIDIMIGTHKLLNDKFVYNDLGLLI 203

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  D+S I   P  R+PI+
Sbjct: 204 IDEEQRFGVKHKEKIKHLKNTVDVLTLSATPIPRTLHMSLIGIRDLSVIETPPKERQPIQ 263

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T +   N +  + E +   +S G + +++  ++E        S+ E++  L +     +I
Sbjct: 264 TFVTSQNNM-VIKEAVMNEVSRGGQVFYVYNKVE--------SIDEKYLELKKLLPDVNI 314

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HGRM+  + E++M    +    +LI TT+IE GID+ + + +I+E+A+ FGL+QL+Q
Sbjct: 315 AYAHGRMTQRELENIMTDVIDRKYDVLITTTIIETGIDISNVNTLIVEDADKFGLSQLYQ 374

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR    +   L+Y P   L++NS  RLS +KN      GF IA +DL  R  G++
Sbjct: 375 LRGRVGRSSREAYAYLMYKPFKSLTENSEKRLSAIKNFTTLGSGFKIAMQDLSIRGAGDV 434

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
           LG +Q G          L+  +LE   +  K IL  +P L   + Q I
Sbjct: 435 LGGRQHGFID--SVGYTLYSQMLEQEIQAKKGIL--EPILEKDKTQDI 478


>gi|124025758|ref|YP_001014874.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
            NATL1A]
 gi|123960826|gb|ABM75609.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
            NATL1A]
          Length = 1167

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 130/424 (30%), Positives = 223/424 (52%), Gaps = 17/424 (4%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            + +  +  KE G     +G    ++  + P++ T  Q +A   +  DM  +  M R++ G
Sbjct: 589  IKLYAERSKEKGYKFPCDGPWQSELEDSFPYALTPDQATATSQVKSDMESEKPMDRLVCG 648

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT VA+ A+  A+ +G Q  ++AP  +L+QQH+  I        I V ++     
Sbjct: 649  DVGFGKTEVAIRAIFKAITSGKQIALLAPTTVLSQQHWRTISDRFAPYPIKVSLLNRFKT 708

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
             + ++  +  +  GQ   ++GTH L    + Y  L L+++DE+ RFGV Q+ K+ +   +
Sbjct: 709  NSEKKHIVSGLKAGQIDAVVGTHQLLNKKLVYKDLGLLVIDEEQRFGVNQKEKIKELKKS 768

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL ++ATPIPRTL ++  G  ++S IT  P  R+PIKT + P++  + +   +   + 
Sbjct: 769  VDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLAPLDN-EIIRSAISQEID 827

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKN 539
             G + ++I P+I        + + +    L     +  + I HG+M +   E+ M +F  
Sbjct: 828  RGGQIFYIVPRI--------KGIEDVAEKLKIMIPNVKLLIAHGQMEEGALENAMLAFNA 879

Query: 540  GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--H 597
            G   +L+ TT++E G+D+   + I+IE++  FGL+QL+QLRGRVGR    +   L Y   
Sbjct: 880  GEADILLCTTIVESGLDIPRVNTILIEDSHKFGLSQLYQLRGRVGRSGVQAHAWLFYPSD 939

Query: 598  PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
              L++ S  RL  +K   D   G+ +A  D++ R  G ILGI+QSG  + +     L+  
Sbjct: 940  EKLNETSRQRLKAIKEFSDLGSGYQLAMRDMEIRGVGNILGIEQSGQMETIGFD--LYME 997

Query: 655  LLEI 658
            LL+ 
Sbjct: 998  LLQE 1001


>gi|50842025|ref|YP_055252.1| transcription-repair coupling factor [Propionibacterium acnes
            KPA171202]
 gi|50839627|gb|AAT82294.1| transcription-repair coupling factor [Propionibacterium acnes
            KPA171202]
          Length = 1222

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 230/489 (47%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 613  DWRKRKARARKAVREIAAELIKLYAARQA--TKGHAFGPDTAWQRELEGAFAYVETPDQL 670

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 671  TTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 730

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 731  QTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEVEFKDLGLV 790

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 791  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 850

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +         +   L     + I
Sbjct: 851  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIE-----KTAAKLRELVPE--ARI 902

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 903  VTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQ 962

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 963  LRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNL 1022

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 1023 LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETE 1080

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1081 RLRLEMYKR 1089


>gi|124023141|ref|YP_001017448.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9303]
 gi|123963427|gb|ABM78183.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9303]
          Length = 1193

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 132/446 (29%), Positives = 225/446 (50%), Gaps = 19/446 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W             +A  +  L    +  +  G     +G    ++  + P+ PT  Q  
Sbjct: 572  WQKIKERTRKLVRKVAMDLVKLYA--ERLQAPGYAFPPDGPWQIELEESFPYEPTPDQVK 629

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            A+ D+ +DM     M R++ GDVG GKT VA+ A+  A+ +G Q  ++AP  +LAQQH+ 
Sbjct: 630  AVVDVKRDMEAAQPMDRLVCGDVGFGKTEVAIRAIFKAITSGRQIAMLAPTTVLAQQHWR 689

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +        I V ++      + R+  L  +  G    ++GTH L   +  + KL L++
Sbjct: 690  TLSDRFAPYPIKVALLNRFRTSSERKSILNGLKEGTIDAVVGTHQLLSKNTTFQKLGLLV 749

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  ++S IT  P  R+PIK
Sbjct: 750  VDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIK 809

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T +   +  + V   ++  L  G + +++ P++E  +        +  + L +      +
Sbjct: 810  THLAAFDE-EAVRSSIRQELDRGGQVFYVVPRVEGIE--------DVASQLQQMLPDLKL 860

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++ + ES M +F  G   L++ TT++E G+D+   + I+IE+A  FGLAQL+Q
Sbjct: 861  LVAHGQMAEGELESSMVAFNAGEADLMLCTTIVESGLDIPRVNTILIEDAHKFGLAQLYQ 920

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   L Y     LS  +  RL  ++       G+ +A  D++ R  G +
Sbjct: 921  LRGRVGRSGVQAHAWLFYPGDASLSDAARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNL 980

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG++QSG  + +     L+  +L+ +
Sbjct: 981  LGVEQSGQMETIGFD--LYMEMLQES 1004


>gi|303237011|ref|ZP_07323583.1| transcription-repair coupling factor [Prevotella disiens FB035-09AN]
 gi|302482791|gb|EFL45814.1| transcription-repair coupling factor [Prevotella disiens FB035-09AN]
          Length = 1194

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 150/576 (26%), Positives = 265/576 (46%), Gaps = 34/576 (5%)

Query: 100  EITLLFFYRKT---EMLKNVFFEGRKITVTGKIKKLKNRIIMVHP-HYIFHNSQDVNFPL 155
            ++ + FF          K      +     GK+      +  + P  ++ H   D     
Sbjct: 468  DLKVCFFTDHQIFDRFHKYSLKSDKARQ--GKMALTMKELQEMEPGDFLVHV--DFGIGK 523

Query: 156  IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
               +  +P G S     +++ +    + V    + K  + K       +A          
Sbjct: 524  FAGLVRVPAGESYQEMIRLVYQHNDIVDVSIHSLYK--ISKYRRADSGDA---APRLSVL 578

Query: 216  KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
                W     +     + +A  +  L  ++  + E G   + +  +  ++  +  +  T 
Sbjct: 579  GSGAWDRLKEKAKKRIKDIARDLIKLYAKR--RHEKGFAFSPDSYLQHELEASFLYEDTP 636

Query: 276  SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
             Q  A +++ QDM     M R++ GDVG GKT VA+ A   A   G Q  ++ P  +LA 
Sbjct: 637  DQLKATQELKQDMESARPMDRLVCGDVGFGKTEVAVRAAFKAATDGKQVAVLVPTTVLAF 696

Query: 336  QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
            QHY+  KK  +N  + V+ ++        ++ +  ++ G+  I++GTH L   S+++  +
Sbjct: 697  QHYQTFKKRLKNMPVTVDYLSRARTAKQTKQVITDLSEGKIDILVGTHKLISKSVKWKDI 756

Query: 396  ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
             L+I+DE+ +FGV  + KL Q  +    L M+ATPIPRTL  + +G  D+S +   P  R
Sbjct: 757  GLLIIDEEQKFGVSTKEKLRQLKSNVDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNR 816

Query: 456  KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF- 514
             PI+T I   +  + + + +   +S   + +++  +I    E           SL + + 
Sbjct: 817  YPIQTEISTFS-AETIADAINFEMSRNGQVFFVNDRIANLPE---------LASLIKKYV 866

Query: 515  -TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +AI HG+M   + E ++  F N    +L++TT++E GID+ +A+ III +A  FGL
Sbjct: 867  PDCRVAIGHGQMKPEELEEIIIGFMNHDYDVLLSTTIVENGIDISNANTIIINDAHKFGL 926

Query: 574  AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
            + LHQ+RGRVGR  + + C LL  P   L+ ++  RL  L+   D   GF +A +DL  R
Sbjct: 927  SDLHQMRGRVGRSNKKAFCYLLAPPLAALNPDARRRLEALETFSDLGSGFNLAMQDLDIR 986

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
              G +LG +QSG  + L    E +  +L  A  + K
Sbjct: 987  GAGNLLGSEQSGFMEDL--GYETYQKILNQAVTELK 1020


>gi|239622194|ref|ZP_04665225.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            infantis CCUG 52486]
 gi|239514191|gb|EEQ54058.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            infantis CCUG 52486]
          Length = 1194

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 130/452 (28%), Positives = 233/452 (51%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRA--KGFAFSPDTPWQKELEDAFPYQETADQL 644

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQHY
Sbjct: 645  TTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHY 704

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++         +A+E +  G   ++IGTH L    I++  L LV
Sbjct: 705  ETFSERFEGFPVNVAAMSRFQTTKEINEAIEGLETGTVDVVIGTHKLLNPKIKFKDLGLV 764

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 765  IIDEEQRFGVKHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 824

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  ++++       S+ ++ ++L     + +
Sbjct: 825  LTYVGAYED-AQVTAAVRRELLRGGQVFYVHNRVQDIS-----SIADKIHTLVPE--AHV 876

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 877  GIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 936

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 937  LRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 996

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 997  LGDEQSGHIE--GVGFDLYVRMVSEAVEKYKE 1026


>gi|256827273|ref|YP_003151232.1| transcription-repair coupling factor Mfd [Cryptobacterium curtum DSM
            15641]
 gi|256583416|gb|ACU94550.1| transcription-repair coupling factor Mfd [Cryptobacterium curtum DSM
            15641]
          Length = 1155

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 227/468 (48%), Gaps = 22/468 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W+          + LA  +  +  R+      G   + +    +++  + P+  T  Q 
Sbjct: 558  DWSRAMGCARKASKKLAFDLVDVYTRRSA--VSGFQYSADTPWMRQMEEDFPYQETPDQL 615

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI D+  DM     M R++ GDVG GKT VAL A   A + G Q +++ P  ILAQQHY
Sbjct: 616  AAIADVKADMRSARPMDRLICGDVGFGKTEVALRAAFKATQDGKQVMVLCPTTILAQQHY 675

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               K   +   + VE+++     + +  AL   A G   +++GTH L    +  + L LV
Sbjct: 676  TTFKDRFEEYGVTVEVLSRFRFSSEQAAALSGFAQGTVDVLVGTHRLLSRDVNPHDLGLV 735

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  + +L     +  VL ++ATPIPRT+ ++  G  D+S I   P  RKPI
Sbjct: 736  IIDEEQRFGVGHKEQLKNLRESIDVLTLSATPIPRTMQMSLSGVRDMSLIMTPPDDRKPI 795

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            K  +   +  D V + ++  L+   + Y++  ++    ++  R              + I
Sbjct: 796  KVHVGEWD-PDVVSDAIRRELARNGQVYYVSNRVRTIDDAVARVG-------QAAGEARI 847

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS    E VM+ F  G   +L+ATT+IE GID    + +IIE+++  GLAQ++Q
Sbjct: 848  GVAHGQMSKEQLEQVMEEFAAGEIDVLVATTIIESGIDNPHTNTLIIEDSQRLGLAQMYQ 907

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL---KNTEDGFLIAEEDLKQRKEGEI 633
            L+GRVGR    +    ++    PL++ +  RL  +   +    G  +A  DL+ R  G +
Sbjct: 908  LKGRVGRSSLQAYAYFMFPENVPLTEEATARLEAVGEYQELGSGMKVAMRDLEIRGAGSM 967

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD-----AKHILTQDPDLTSV 676
            LG +QSG         +L   +L  A +      A  +    P L+ +
Sbjct: 968  LGAEQSGNMS--AVGFDLFAQMLTEAVRATREGRADTLHDLPPALSDI 1013


>gi|284928643|ref|YP_003421165.1| transcription-repair coupling factor [cyanobacterium UCYN-A]
 gi|284809102|gb|ADB94807.1| transcription-repair coupling factor [cyanobacterium UCYN-A]
          Length = 1151

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 141/458 (30%), Positives = 232/458 (50%), Gaps = 18/458 (3%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
            K    +W    ++     + LA  +  L   +  KK    P   +    Q++  + P+ 
Sbjct: 549 HKMTGKDWGKLKQKIRKNIKKLAFNLLHLYAERAQKKGYSYP--ADSLWQQELEDSFPYQ 606

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIG 331
            T  Q  AI+++  D+     M R++ GDVG GKT VA+ A+   V +G  Q V +AP  
Sbjct: 607 ATPDQVQAIREVKIDLESNRPMDRLICGDVGFGKTEVAIRAIFKVVTSGHKQVVFLAPTT 666

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           IL QQHY  ++       I + ++      + ++  +ER+  G+  I++GT  L   +I+
Sbjct: 667 ILTQQHYNTLRTRFAPYPISIGLLNRFRTTSEKKDIIERLTTGELDIVVGTQQLLGKNIK 726

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+++DE+ RFGV  + K+        VL +TATPIPRTL ++  G  ++S I+  
Sbjct: 727 FKDLGLLVIDEEQRFGVNHKEKIRTIKANVDVLTLTATPIPRTLHMSLSGIREMSLISTP 786

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R+ IKT +   +  + V   ++  L  G + +++ P+IE   E              
Sbjct: 787 PPSRRSIKTHLSSYD-PNLVKAAVRAELDRGGQVFYVVPRIEHIDEL-------VLQLKR 838

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               + I + HG+M   + E  M SF NG   +L+ TT+IE G+D+   + IIIE+A+ F
Sbjct: 839 MIPDAKILVAHGQMDVNNLELTMLSFNNGDADILVCTTIIESGLDIPKVNTIIIEDAQKF 898

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLK 626
           GL+QL+QLRGRVGR    +   L Y     L+ N+  RL+ L+       G+ +A  DL+
Sbjct: 899 GLSQLYQLRGRVGRSGIQAHAWLFYPSRSELTDNALKRLNALQEFSELGSGYHLATRDLE 958

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            R  G +LG +QSG  + +    EL+  +L+ A K+ +
Sbjct: 959 IRGAGNLLGAEQSGQMEAI--GFELYMDMLQEAIKEVQ 994


>gi|313792864|gb|EFS40931.1| transcription-repair coupling factor [Propionibacterium acnes
            HL110PA1]
 gi|313802684|gb|EFS43906.1| transcription-repair coupling factor [Propionibacterium acnes
            HL110PA2]
 gi|313840319|gb|EFS78033.1| transcription-repair coupling factor [Propionibacterium acnes
            HL086PA1]
 gi|314964282|gb|EFT08382.1| transcription-repair coupling factor [Propionibacterium acnes
            HL082PA1]
 gi|315078702|gb|EFT50733.1| transcription-repair coupling factor [Propionibacterium acnes
            HL053PA2]
 gi|315081837|gb|EFT53813.1| transcription-repair coupling factor [Propionibacterium acnes
            HL078PA1]
 gi|327456823|gb|EGF03478.1| transcription-repair coupling factor [Propionibacterium acnes
            HL092PA1]
          Length = 1208

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 230/489 (47%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 599  DWRKRKARARKAVREIAAELIKLYAARQA--TKGHAFGPDTAWQRELEGAFAYVETPDQL 656

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 657  TTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 716

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 717  QTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEVEFKDLGLV 776

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 777  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 836

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +         +   L     + I
Sbjct: 837  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIE-----KTAAKLRELVPE--ARI 888

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 889  VTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQ 948

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 949  LRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNL 1008

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 1009 LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETE 1066

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1067 RLRLEMYKR 1075


>gi|144897813|emb|CAM74677.1| Transcription-repair coupling factor (superfamily II helicase)
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1098

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 223/450 (49%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W S   +       +A Q+  +  ++Q +K     +     +  +     P++ T+ Q  
Sbjct: 501 WQSRKAKLKKRIRDMADQLIAIAAQRQLRKSE--SLTPPEGLWDEFCARFPYAETEDQAR 558

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI D + D+     M R++ GDVG GKT VA+ A   A  +G Q  ++ P  +LA+QHY 
Sbjct: 559 AIDDTVADLGSGRPMDRLVCGDVGFGKTEVAMRAAFVAAMSGMQVAVVVPTTLLARQHYR 618

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                     + VE ++  +      +    +A G   I++GTHA+   SI + +L L+I
Sbjct: 619 NFSDRFHGLPLKVEQLSRLVTAKRANEVKAGLADGSVDIVVGTHAVLAKSINFKRLGLLI 678

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+  FGV  + +L Q  +  HVL +TATPIPRTL L   G  ++S I   P  R  ++
Sbjct: 679 IDEEQHFGVGHKERLKQLKSDVHVLTLTATPIPRTLQLALTGVKEMSVIATPPVDRLVVR 738

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T ++P + +  + E +      G + +++CP++ +        V +R   L        A
Sbjct: 739 TFVLPFDPV-VLREAILRERYRGGQVFYVCPRLADID-----RVADRLAKLVPEV--KCA 790

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HGR++  + E VM +F +    +L++T +IE G+D+   + +II  A+ FGL QL+QL
Sbjct: 791 IAHGRLTPTELEEVMTAFGDKQYDVLLSTNIIESGLDMPSVNTLIIHRADMFGLGQLYQL 850

Query: 580 RGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGRG+              LSK +  RL V++  +    GF +A  DL  R  G +L
Sbjct: 851 RGRVGRGKTRGYAYFTLPTDKVLSKPAEKRLHVMQTLDSLGAGFQLASHDLDIRGAGNLL 910

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG         EL+  L+E A   AK
Sbjct: 911 GEEQSGHI--REVGIELYQQLIEEAVAAAK 938


>gi|297626903|ref|YP_003688666.1| Transcription-repair coupling factor [Propionibacterium
            freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922668|emb|CBL57245.1| Transcription-repair coupling factor [Propionibacterium
            freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 1232

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 129/438 (29%), Positives = 208/438 (47%), Gaps = 15/438 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW             +A  +  L   +Q     G   + +     ++     +  T  Q 
Sbjct: 598  EWKHRKSRARKAVRQVAAGLIKLYAARQA--SRGHAFSPDTPWQHEMEDAFRYEETPDQL 655

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+  DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQHY
Sbjct: 656  ACITDVKHDMEQIVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHY 715

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++    +      LE +A G+  ++IGTH L    + Y  L LV
Sbjct: 716  QTFAERYSGFPVTVAQLSRFQTEKEVATTLEEMAQGKVDVVIGTHRLLSSKVHYKDLGLV 775

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 776  IIDEEQRFGVEHKEALKKLRVNVDVLSMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 835

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  ++   + + +  ++          V  R   +     + +
Sbjct: 836  LTFAGPYDE-GQVVAAIRREMAREGQVFLVHNRVASID-----RVAARIREMVPE--ARV 887

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+MS+   E VM  F      +L+ TT++E G+D+  A+ +I++ A+H GL+Q+HQ
Sbjct: 888  VTAHGQMSEKTLEKVMVDFWERRADVLVCTTIVEAGLDIPTANTLIVDRADHMGLSQMHQ 947

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY     L+  ++ RL+ L    +   G  IA +DL+ R  G +
Sbjct: 948  LRGRVGRSRERGYAYFLYPGDRTLTTTAHDRLAALAANNELGAGMAIAMKDLEIRGAGNL 1007

Query: 634  LGIKQSGMPKFLIAQPEL 651
            LG +QSG    +     L
Sbjct: 1008 LGDEQSGHIADVGFDLYL 1025


>gi|313765341|gb|EFS36705.1| transcription-repair coupling factor [Propionibacterium acnes
            HL013PA1]
 gi|313806696|gb|EFS45203.1| transcription-repair coupling factor [Propionibacterium acnes
            HL087PA2]
 gi|313814596|gb|EFS52310.1| transcription-repair coupling factor [Propionibacterium acnes
            HL025PA1]
 gi|313815252|gb|EFS52966.1| transcription-repair coupling factor [Propionibacterium acnes
            HL059PA1]
 gi|313817239|gb|EFS54953.1| transcription-repair coupling factor [Propionibacterium acnes
            HL046PA2]
 gi|313821699|gb|EFS59413.1| transcription-repair coupling factor [Propionibacterium acnes
            HL036PA1]
 gi|313824410|gb|EFS62124.1| transcription-repair coupling factor [Propionibacterium acnes
            HL036PA2]
 gi|313826767|gb|EFS64481.1| transcription-repair coupling factor [Propionibacterium acnes
            HL063PA1]
 gi|313828557|gb|EFS66271.1| transcription-repair coupling factor [Propionibacterium acnes
            HL063PA2]
 gi|314916016|gb|EFS79847.1| transcription-repair coupling factor [Propionibacterium acnes
            HL005PA4]
 gi|314916921|gb|EFS80752.1| transcription-repair coupling factor [Propionibacterium acnes
            HL050PA1]
 gi|314921562|gb|EFS85393.1| transcription-repair coupling factor [Propionibacterium acnes
            HL050PA3]
 gi|314931114|gb|EFS94945.1| transcription-repair coupling factor [Propionibacterium acnes
            HL067PA1]
 gi|314954829|gb|EFS99235.1| transcription-repair coupling factor [Propionibacterium acnes
            HL027PA1]
 gi|314958995|gb|EFT03097.1| transcription-repair coupling factor [Propionibacterium acnes
            HL002PA1]
 gi|314961290|gb|EFT05391.1| transcription-repair coupling factor [Propionibacterium acnes
            HL002PA2]
 gi|314980484|gb|EFT24578.1| transcription-repair coupling factor [Propionibacterium acnes
            HL072PA2]
 gi|315086378|gb|EFT58354.1| transcription-repair coupling factor [Propionibacterium acnes
            HL002PA3]
 gi|315087626|gb|EFT59602.1| transcription-repair coupling factor [Propionibacterium acnes
            HL072PA1]
 gi|315099738|gb|EFT71714.1| transcription-repair coupling factor [Propionibacterium acnes
            HL059PA2]
 gi|315101957|gb|EFT73933.1| transcription-repair coupling factor [Propionibacterium acnes
            HL046PA1]
 gi|315106536|gb|EFT78512.1| transcription-repair coupling factor [Propionibacterium acnes
            HL030PA1]
 gi|315110324|gb|EFT82300.1| transcription-repair coupling factor [Propionibacterium acnes
            HL030PA2]
 gi|327333610|gb|EGE75330.1| transcription-repair coupling factor [Propionibacterium acnes
            HL096PA3]
 gi|327445362|gb|EGE92016.1| transcription-repair coupling factor [Propionibacterium acnes
            HL013PA2]
 gi|327454831|gb|EGF01486.1| transcription-repair coupling factor [Propionibacterium acnes
            HL087PA3]
 gi|327455689|gb|EGF02344.1| transcription-repair coupling factor [Propionibacterium acnes
            HL083PA2]
 gi|328755887|gb|EGF69503.1| transcription-repair coupling factor [Propionibacterium acnes
            HL087PA1]
 gi|328756670|gb|EGF70286.1| transcription-repair coupling factor [Propionibacterium acnes
            HL025PA2]
          Length = 1208

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 230/489 (47%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 599  DWRKRKARARKAVREIAAELIKLYAARQA--TKGHAFGPDTAWQRELEGAFAYVETPDQL 656

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 657  TTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 716

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 717  QTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEVEFKDLGLV 776

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 777  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 836

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +         +   L     + I
Sbjct: 837  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIE-----KTAAKLRELVPE--ARI 888

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 889  VTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQ 948

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 949  LRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNL 1008

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 1009 LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETE 1066

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1067 RLRLEMYKR 1075


>gi|294101748|ref|YP_003553606.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
           DSM 12261]
 gi|293616728|gb|ADE56882.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
           DSM 12261]
          Length = 1025

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 147/482 (30%), Positives = 240/482 (49%), Gaps = 27/482 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +           +  L  R++     G    V  +I +  +   P+  T  Q  
Sbjct: 443 WKKAVEKTRERVREEVKNLVRLYARREL--LKGYAFPVASEIYRHFVEAFPYVETPDQLR 500

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A ++ILQDM   + M R+L GDVG GKT +A+ A   A EAG Q V++ P  ILAQQHY 
Sbjct: 501 AEQEILQDMESSHPMDRLLVGDVGFGKTEIAMRAAFKASEAGKQVVVLVPTTILAQQHYH 560

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +       I VE+++  +  + +++ LE    G   I+IGT  L Q  I++  L L+I
Sbjct: 561 TFRSRMAGFPIRVEVLSRFVSTSRQKRILEDTKKGLVDILIGTQRLLQKDIEFKDLGLLI 620

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV  + KL        VL ++ATPIPRTL L+  G    S I+  P  R P+ 
Sbjct: 621 IDEEHRFGVMHKEKLKDTREGLDVLTLSATPIPRTLSLSLRGLRSFSIISTPPYNRVPVL 680

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSI 518
           T++ P  + + +   +   L+ G + +++  +I   K         ++  L   F  + I
Sbjct: 681 TMVGPRKK-NLIHRAVLQELNRGGQVFFVSNRINRLKG--------KYEELKIMFPEARI 731

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           ++ HG+M++ D E  M  F NG   +L+ TT++E G+D+  A+ +I+++A+  GLAQ++Q
Sbjct: 732 SMAHGQMAEKDLERTMLDFYNGNLDILVCTTIVESGLDIPRANTLIVDDAQELGLAQMYQ 791

Query: 579 LRGRVGRGEEISSCILLYHPPL-----SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           LRGRVGR EE +    LY   +     +   +  +S   +   G+ +A +DL+ R  G+I
Sbjct: 792 LRGRVGRREEGAYAYFLYPETMPLQKETMERFEAISAFSDIGSGYSLALQDLQIRGSGDI 851

Query: 634 LGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTS------VRGQSIRIL 684
           +G+ Q G  +   +      L + +  I R +       D +L+       +   +IRI 
Sbjct: 852 IGVSQHGQDERVGYRFYYKMLEEEIARI-RGELFSETPVDSELSGTIPSTYIPQDTIRIT 910

Query: 685 LY 686
           LY
Sbjct: 911 LY 912


>gi|314969382|gb|EFT13480.1| transcription-repair coupling factor [Propionibacterium acnes
            HL037PA1]
          Length = 1208

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 230/489 (47%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 599  DWRKRKARARKAVREIAAELIKLYAARQA--TKGHAFGPDTAWQRELEGAFAYVETPDQL 656

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 657  TTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 716

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 717  QTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEVEFKDLGLV 776

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 777  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 836

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +         +   L     + I
Sbjct: 837  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIE-----KTAAKLRELVPE--ARI 888

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 889  VTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQ 948

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 949  LRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNL 1008

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 1009 LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETE 1066

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1067 RLRLEMYKR 1075


>gi|332638696|ref|ZP_08417559.1| transcription-repair coupling factor [Weissella cibaria KACC 11862]
          Length = 1172

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 220/449 (48%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +     E +A ++  L   ++ K+        +  + +      P+  T  Q 
Sbjct: 568  EWQKAKAKVAKKVEDIADELLQLYAERELKQG--FAFPQDDDVIRDFEDAFPYPETPDQI 625

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             + ++I  DM +   M R+L GDVG GKT VAL A   A  AG Q  ++ P  ILAQQHY
Sbjct: 626  RSTQEIKADMEKTRPMDRLLVGDVGFGKTEVALRAAFKAAHAGKQVAMLVPTTILAQQHY 685

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E +        + V I++    +         +      I++GTH +    + +  L L+
Sbjct: 686  ESMLNRFDGFGVNVAIMSRFQTKKQMDATKAGLKDHTIDIVVGTHRILSKDMDFADLGLL 745

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L    T   VL +TATPIPRTL +  +G  D+S I   PA R PI
Sbjct: 746  IIDEEQRFGVKHKERLKALQTNVDVLTLTATPIPRTLNMAMVGVRDLSVIETPPANRYPI 805

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  N        ++  +S G + Y++  ++E+  +           SL     + +
Sbjct: 806  QTYVMEQNGRVTA-SAIEREMSRGGQTYYLHNRVEDIAQVAG-----MIESLVPE--ARV 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              IHG+M++   E ++  F N    +L+ TT+IE G+D+ +A+ + +ENA+H GLAQL+Q
Sbjct: 858  GYIHGQMTEAQMEGILVDFINREYDVLVTTTIIETGVDIPNANTLFVENADHMGLAQLYQ 917

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR   I+     Y     L++ S  RL+ +++      GF IA  DL  R  G++
Sbjct: 918  LRGRVGRSNNIAYAYFTYPGTRSLNEESEKRLTAIRDFTELGSGFKIAMRDLSIRGAGDL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG  Q G    +     L+  +L  A  +
Sbjct: 978  LGQSQHGFINAVGYD--LYTQMLNEAVAE 1004


>gi|314987497|gb|EFT31588.1| transcription-repair coupling factor [Propionibacterium acnes
            HL005PA2]
 gi|314989037|gb|EFT33128.1| transcription-repair coupling factor [Propionibacterium acnes
            HL005PA3]
 gi|315082669|gb|EFT54645.1| transcription-repair coupling factor [Propionibacterium acnes
            HL027PA2]
 gi|328758609|gb|EGF72225.1| transcription-repair coupling factor [Propionibacterium acnes
            HL020PA1]
          Length = 1208

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 232/489 (47%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 599  DWRKRKARARKAVREIAAELIKLYAARQA--TKGHAFGPDTAWQRELEGAFAYVETPDQL 656

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 657  TTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 716

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 717  QTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEVEFKDLGLV 776

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 777  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 836

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +++  +        L     + I
Sbjct: 837  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAK-----LRELVPE--ARI 888

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 889  VTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQ 948

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 949  LRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNL 1008

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 1009 LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETE 1066

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1067 RLRLEMYKR 1075


>gi|317481857|ref|ZP_07940884.1| transcription-repair coupling factor [Bifidobacterium sp.
            12_1_47BFAA]
 gi|316916648|gb|EFV38043.1| transcription-repair coupling factor [Bifidobacterium sp.
            12_1_47BFAA]
          Length = 1194

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 130/452 (28%), Positives = 233/452 (51%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRA--KGFAFSPDTPWQKELEDAFPYQETADQL 644

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQHY
Sbjct: 645  TTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHY 704

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++         +A+E +  G   ++IGTH L    I++  L LV
Sbjct: 705  ETFSERFEGFPVNVAAMSRFQTTKEINEAIEGLETGTVDVVIGTHKLLNPKIKFKDLGLV 764

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 765  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 824

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  ++++       S+ ++ ++L     + +
Sbjct: 825  LTYVGAYED-AQVTAAVRRELLRGGQVFYVHNRVQDIS-----SIADKIHTLVPE--AHV 876

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 877  GIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 936

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 937  LRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 996

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 997  LGDEQSGHIE--GVGFDLYVRMVSEAVEKYKE 1026


>gi|308235054|ref|ZP_07665791.1| transcription-repair coupling factor [Gardnerella vaginalis ATCC
            14018]
 gi|311114598|ref|YP_003985819.1| transcription-repair coupling factor [Gardnerella vaginalis ATCC
            14019]
 gi|310946092|gb|ADP38796.1| transcription-repair coupling factor [Gardnerella vaginalis ATCC
            14019]
          Length = 1200

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 131/452 (28%), Positives = 229/452 (50%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   + + +A  +  L          G   + +    +++    P+  T  Q 
Sbjct: 604  DWAATKAKARKHVQEVAEDLIKLY--SARASTKGFAFSSDTPWQKELEDAFPYQETPDQL 661

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++ QDM +   M R++ GDVG GKT +A+ A   AV+ G Q V++AP  +L QQHY
Sbjct: 662  TTIDEVKQDMQKPIPMDRLICGDVGFGKTEIAVRAAFKAVQDGKQVVVLAPTTLLVQQHY 721

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E          + V  ++           ++ I  GQ  +++GTH L   +I++  L LV
Sbjct: 722  ETFTNRFSGFPVTVAAMSRFQSAKEIDATMQGIESGQVDVVVGTHKLLNPNIKFKDLGLV 781

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 782  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 841

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   +K  L  G + +++  ++E+  +            L     + +
Sbjct: 842  LTYVGAYED-AQVAACVKRELLRGGQVFYVHNRVEDISKIASN-----IQKLVPD--ARV 893

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            AI HG+M +   ++++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 894  AIAHGKMGEKQLDTIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 953

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ ++ RL+ +        GF +A +DL+ R  G +
Sbjct: 954  LRGRVGRGRERAYAYFLYDPTKPMTQQAHDRLATIAQYTALGSGFDVAMKDLELRGTGNL 1013

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG  QSG  +      +L+  ++  A +  K 
Sbjct: 1014 LGDAQSGHIE--GVGFDLYVRMVSEAVEKYKE 1043


>gi|306992477|gb|ADN19355.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 422

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 158/426 (37%), Positives = 249/426 (58%), Gaps = 8/426 (1%)

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKS 198
           +P         +N   I  +Y L  GL+ +  +KI+  AL   +  + E+ +++ L +K 
Sbjct: 2   NPVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEVEEFFDEEFLFEKG 61

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258
              I  A   I+ P+     E     + R  Y EL   Q+AL LM++  K + GI    E
Sbjct: 62  LMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMALFLMKRSVKGKKGIKF--E 116

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
               +  L  +PF  T +Q   +K+I+ DM+    M R++QGDVGSGKT+VA  +M  A+
Sbjct: 117 RVELKPFLMGLPFKLTAAQIKVLKEIIADMNSHKVMNRLVQGDVGSGKTVVAACSMYIAI 176

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           + G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  +++++ LE+I +G   I
Sbjct: 177 KNGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKKEVLEKIKNGDYDI 236

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           ++GTHAL +D + +  L L I DEQHRFGV+QR  LT+K   P VL+MTATPIPRTL L 
Sbjct: 237 VVGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENPDVLVMTATPIPRTLALI 296

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
             GD+DIS I + P GRK +KT +I  +   +  E     + +G++ Y +CP IEE  + 
Sbjct: 297 LYGDLDISIIDQLPPGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQVYVVCPLIEESDKI 356

Query: 499 NFRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           N  S    +  +++     + + ++HG+M+D DKE VM+ F NG   +L++TTVIEVG++
Sbjct: 357 NAMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVNGKIDILVSTTVIEVGVN 416

Query: 557 VVDASI 562
           V +A++
Sbjct: 417 VPNATV 422


>gi|314926804|gb|EFS90635.1| transcription-repair coupling factor [Propionibacterium acnes
            HL036PA3]
          Length = 1208

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 232/489 (47%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 599  DWRKRKARARKAVREIAAELIKLYAARQA--TKGHAFGPDTAWQRELEGAFAYVETPDQL 656

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 657  TTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 716

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 717  QTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEVEFKDLGLV 776

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 777  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 836

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +++  +        L     + I
Sbjct: 837  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAK-----LRELVPE--ARI 888

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 889  VTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQ 948

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 949  LRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNL 1008

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 1009 LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETE 1066

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1067 RLRLEMYKR 1075


>gi|115371924|ref|ZP_01459237.1| transcription-repair coupling factor [Stigmatella aurantiaca
           DW4/3-1]
 gi|115371159|gb|EAU70081.1| transcription-repair coupling factor [Stigmatella aurantiaca
           DW4/3-1]
          Length = 769

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 154/460 (33%), Positives = 244/460 (53%), Gaps = 20/460 (4%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +R   ++LL     LL +    K   G   +   +   +   +  F  T  Q  AI+D+L
Sbjct: 177 KRRVKEQLLKMAAELLQLAAARKAHPGHAFSAPDRYFAQFEADFEFEETPDQAKAIEDVL 236

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            DM +   M R++ GDVG GKT VA+ A   A     Q  ++ P  +LAQQH+   KK  
Sbjct: 237 ADMQKPTPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVLVPTTVLAQQHFLSFKKRF 296

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           ++  I VE+I+G       R+ L+R   G+  I+IGTH L    + +  L L+IVDE+ R
Sbjct: 297 KDYPITVEVISGLKKPPEVRELLKRAKEGRVDILIGTHKLLGGDVAFKDLGLLIVDEEQR 356

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+Q+ +L +  T   VL +TATPIPRTL ++  G  D+S I   P  R+ I+T ++  
Sbjct: 357 FGVKQKEQLKRLRTQVDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMKF 416

Query: 466 NRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
           +   +VI E ++  ++ G + +++  +++        S+ +    L      SI + HG+
Sbjct: 417 D--PQVIQEAIQREVARGGQVFFVHNRVQSIA-----SMEKLLRELVPKV--SIGVAHGQ 467

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M +   E VM +F     ++L+ T++IE GID+  A+ +II  A+ FGLAQL+QLRGRVG
Sbjct: 468 MGEGQLERVMLAFTEKQHQVLLCTSIIESGIDISSANTMIINRADAFGLAQLYQLRGRVG 527

Query: 585 RGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQS 639
           R +E +   LL      +++++  RL VL+N  +   GF IA  DL+ R  G +LG KQS
Sbjct: 528 RSKERAYAYLLVPARRAVTRDAQRRLEVLQNFTELGAGFSIASHDLEIRGAGNLLGDKQS 587

Query: 640 GMPKFLIAQPELHDSLLEIARKDAKHI---LTQDPDLTSV 676
           G    +     ++  LLE A  + +     +  +PD+T  
Sbjct: 588 GAIAEIGFD--MYAQLLEEAVAEMQGQPPRMQIEPDITLP 625


>gi|312133038|ref|YP_004000377.1| mfd [Bifidobacterium longum subsp. longum BBMN68]
 gi|311774027|gb|ADQ03515.1| Mfd [Bifidobacterium longum subsp. longum BBMN68]
          Length = 1194

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 130/452 (28%), Positives = 233/452 (51%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRA--KGFAFSPDTPWQKELEDAFPYQETADQL 644

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQHY
Sbjct: 645  TTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHY 704

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++         +A+E +  G   ++IGTH L    I++  L LV
Sbjct: 705  ETFSERFEGFPVNVAAMSRFQTTKEINEAIEGLETGTVDVVIGTHKLLNPKIKFKDLGLV 764

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 765  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 824

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  ++++       S+ ++ ++L     + +
Sbjct: 825  LTYVGAYED-AQVTAAVRRELLRGGQVFYVHNRVQDIS-----SIADKIHTLVPE--AHV 876

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 877  GIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 936

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 937  LRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 996

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 997  LGDEQSGHIE--GVGFDLYVRMVSEAVEKYKE 1026


>gi|210608664|ref|ZP_03287941.1| hypothetical protein CLONEX_00120 [Clostridium nexile DSM 1787]
 gi|210152921|gb|EEA83927.1| hypothetical protein CLONEX_00120 [Clostridium nexile DSM 1787]
          Length = 1112

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 173/626 (27%), Positives = 299/626 (47%), Gaps = 57/626 (9%)

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            E++   I+   G++++   + +      K ++   T       F +K +  K   +EG+
Sbjct: 384 REVNPGEIMVTYGHVTEGYEYPM-----IKFIVISETDI-----FGQKKKKRKRKVYEGQ 433

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK-IIVEALS 180
           KI    ++K            Y+ H +  +       +Y     + VD   K  +  A +
Sbjct: 434 KIQSFSELKVG---------DYVVHENHGLG------IYQGIEKIEVDKVSKDYMKIAYA 478

Query: 181 RLPVLPEWIEK---DLLQKKSFPSIAEAFNIIHNPR--KAKDFEWTSPARERLAYDELLA 235
               L  +I     DL+QK        A      P+  +    EWT          + +A
Sbjct: 479 AGGNL--YIPATQLDLIQKY-------ASADAKKPKLNRLGGQEWTKTKTRVRGAVKEIA 529

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
             +  L   +Q K   G     +    ++     PF  T+ Q  AI+   +DM     M 
Sbjct: 530 KDLVELYAARQEKH--GFVYGEDTVWQREFEEMFPFEETEDQLLAIEATKKDMESTKIMD 587

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++ GDVG GKT +A+ A   AV+   Q V + P  ILAQQHY    +  +   + V+++
Sbjct: 588 RLICGDVGYGKTEIAIRAAFKAVQENKQVVYLVPTTILAQQHYNTFVQRMKEFPVRVDLM 647

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
                 A ++K +E    G   I++GTH +    +++  L L+I+DE+ RFGVQ + ++ 
Sbjct: 648 CRFRTPAQQKKTIEDTKRGLVDIVVGTHRVLSKDLEFKDLGLLIIDEEQRFGVQHKEQIK 707

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +      VL +TATPIPRTL ++ +G  D+S + E P  R PI+T ++  N  + V E +
Sbjct: 708 KLKENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPVDRMPIQTYVMEYND-EMVREAI 766

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +  LS   + Y++  ++++  E       ++   L     +++A  HG+M + + E++M 
Sbjct: 767 QRELSRQGQVYYVYNKVKDIDEIT-----DKVQKLVPE--ANVAFAHGQMKERELENIML 819

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F NG   +L++TT+IE G+D+ +A+ +II +A+  GL+Q++QLRGRVGR   ++   LL
Sbjct: 820 DFINGEIDVLVSTTIIETGLDISNANTMIIHDADQLGLSQMYQLRGRVGRSNRMAYAFLL 879

Query: 596 YHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
           Y     L + +  RLS ++   D   GF IA  DL+ R  G +LG +Q G  + +     
Sbjct: 880 YKRDKLLREVAEKRLSAIREFTDLGSGFKIAMRDLEIRGAGNLLGAEQHGHMEAVGYD-- 937

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSV 676
           L+  +L  A K  K  + ++P  T+V
Sbjct: 938 LYCKMLNEAVKQLKGEIEEEPYTTTV 963


>gi|310824213|ref|YP_003956571.1| transcription-repair-coupling factor [Stigmatella aurantiaca DW4/3-1]
 gi|309397285|gb|ADO74744.1| Transcription-repair-coupling factor [Stigmatella aurantiaca DW4/3-1]
          Length = 1194

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 154/460 (33%), Positives = 244/460 (53%), Gaps = 20/460 (4%)

Query: 226  ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            +R   ++LL     LL +    K   G   +   +   +   +  F  T  Q  AI+D+L
Sbjct: 602  KRRVKEQLLKMAAELLQLAAARKAHPGHAFSAPDRYFAQFEADFEFEETPDQAKAIEDVL 661

Query: 286  QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
             DM +   M R++ GDVG GKT VA+ A   A     Q  ++ P  +LAQQH+   KK  
Sbjct: 662  ADMQKPTPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVLVPTTVLAQQHFLSFKKRF 721

Query: 346  QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
            ++  I VE+I+G       R+ L+R   G+  I+IGTH L    + +  L L+IVDE+ R
Sbjct: 722  KDYPITVEVISGLKKPPEVRELLKRAKEGRVDILIGTHKLLGGDVAFKDLGLLIVDEEQR 781

Query: 406  FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            FGV+Q+ +L +  T   VL +TATPIPRTL ++  G  D+S I   P  R+ I+T ++  
Sbjct: 782  FGVKQKEQLKRLRTQVDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMKF 841

Query: 466  NRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
            +   +VI E ++  ++ G + +++  +++        S+ +    L      SI + HG+
Sbjct: 842  D--PQVIQEAIQREVARGGQVFFVHNRVQSIA-----SMEKLLRELVPKV--SIGVAHGQ 892

Query: 525  MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
            M +   E VM +F     ++L+ T++IE GID+  A+ +II  A+ FGLAQL+QLRGRVG
Sbjct: 893  MGEGQLERVMLAFTEKQHQVLLCTSIIESGIDISSANTMIINRADAFGLAQLYQLRGRVG 952

Query: 585  RGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQS 639
            R +E +   LL      +++++  RL VL+N  +   GF IA  DL+ R  G +LG KQS
Sbjct: 953  RSKERAYAYLLVPARRAVTRDAQRRLEVLQNFTELGAGFSIASHDLEIRGAGNLLGDKQS 1012

Query: 640  GMPKFLIAQPELHDSLLEIARKDAKHI---LTQDPDLTSV 676
            G    +     ++  LLE A  + +     +  +PD+T  
Sbjct: 1013 GAIAEIGFD--MYAQLLEEAVAEMQGQPPRMQIEPDITLP 1050


>gi|322688798|ref|YP_004208532.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            infantis 157F]
 gi|320460134|dbj|BAJ70754.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            infantis 157F]
          Length = 1194

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 130/452 (28%), Positives = 233/452 (51%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRA--KGFAFSPDTPWQKELEDAFPYQETADQL 644

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQHY
Sbjct: 645  TTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHY 704

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++         +A+E +  G   ++IGTH L    I++  L LV
Sbjct: 705  ETFSERFEGFPVNVAAMSRFQTTKEINEAIEGLETGTVDVVIGTHKLLNPKIKFKDLGLV 764

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 765  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 824

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  ++++       S+ ++ ++L     + +
Sbjct: 825  LTYVGAYED-AQVTAAVRRELLRGGQVFYVHNRVQDIS-----SIADKIHTLVPE--AHV 876

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 877  GIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 936

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 937  LRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 996

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 997  LGDEQSGHIE--GVGFDLYVRMVSEAVEKYKE 1026


>gi|322690788|ref|YP_004220358.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            longum JCM 1217]
 gi|320455644|dbj|BAJ66266.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            longum JCM 1217]
          Length = 1194

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 130/452 (28%), Positives = 233/452 (51%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRA--KGFAFSPDTPWQKELEDAFPYQETADQL 644

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQHY
Sbjct: 645  TTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHY 704

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++         +A+E +  G   ++IGTH L    I++  L LV
Sbjct: 705  ETFSERFEGFPVNVAAMSRFQTTKEINEAIEGLETGTVDVVIGTHKLLNPKIKFKDLGLV 764

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 765  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 824

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  ++++       S+ ++ ++L     + +
Sbjct: 825  LTYVGAYED-AQVTAAVRRELLRGGQVFYVHNRVQDIS-----SIADKIHTLVPE--AHV 876

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 877  GIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 936

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 937  LRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 996

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 997  LGDEQSGHIE--GVGFDLYVRMVSEAVEKYKE 1026


>gi|118619716|ref|YP_908048.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
            ulcerans Agy99]
 gi|118571826|gb|ABL06577.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
            ulcerans Agy99]
          Length = 1222

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 226/449 (50%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT+   +       +AG++  L  ++Q     G     +     ++     F+ T  Q 
Sbjct: 591  DWTNTKTKARKAVREIAGELVALYAKRQA--SPGHAFAPDTPWQAEMEDAFGFTETVDQL 648

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 649  TAITEVKRDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 708

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +          + V+ ++     A  R  +E +A G   ++IGTH L Q  +++  L LV
Sbjct: 709  QTFTDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLV 768

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +    +   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 769  VVDEEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 828

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   L+  L    +A+++  +      S+      R   L     + +
Sbjct: 829  LTYVGPHDD-KQVAAALRRELLRDGQAFYVHNR-----ASSIDDTAARIRKLVPE--ARV 880

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M +   E  +  F      +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 881  VAAHGQMPEDLLERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 940

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 941  LRGRVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNV 1000

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG++QSG         +L+  L+  A + 
Sbjct: 1001 LGVEQSGH--VAGVGFDLYLRLVGEAVEA 1027


>gi|23335259|ref|ZP_00120496.1| COG1197: Transcription-repair coupling factor (superfamily II
            helicase) [Bifidobacterium longum DJO10A]
 gi|189439640|ref|YP_001954721.1| transcription-repair coupling factor (superfamily II helicase)
            [Bifidobacterium longum DJO10A]
 gi|189428075|gb|ACD98223.1| Transcription-repair coupling factor (superfamily II helicase)
            [Bifidobacterium longum DJO10A]
          Length = 1194

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 232/452 (51%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRA--KGFAFSPDTPWQKELEDAFPYQETADQL 644

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQHY
Sbjct: 645  TTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHY 704

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++         + +E +  G   ++IGTH L    I++  L LV
Sbjct: 705  ETFSERFEGFPVNVAAMSRFQTTKEINETIEGLETGTVDVVIGTHKLLNPKIKFKDLGLV 764

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 765  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 824

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  ++++       S+ ++ ++L     + +
Sbjct: 825  LTYVGAYED-AQVTAAVRRELLRGGQVFYVHNRVQDIS-----SIADKIHTLVPE--AHV 876

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 877  GIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 936

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 937  LRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 996

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 997  LGDEQSGHIE--GVGFDLYVRMVSEAVEKYKE 1026


>gi|289555197|ref|ZP_06444407.1| LOW QUALITY PROTEIN: transcription-repair coupling factor mfd
           [Mycobacterium tuberculosis KZN 605]
 gi|289439829|gb|EFD22322.1| LOW QUALITY PROTEIN: transcription-repair coupling factor mfd
           [Mycobacterium tuberculosis KZN 605]
          Length = 824

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 235/474 (49%), Gaps = 17/474 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W +   +       +AG++  L  ++Q     G   + +     ++     F+ T  Q 
Sbjct: 187 DWANTKTKARRAVREIAGELVSLYAKRQA--SPGHAFSPDTPWQAELEDAFGFTETVDQL 244

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 245 TAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 304

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +   +      + ++ ++     A  R  ++ +A G   I+IGTH L Q  +++  L LV
Sbjct: 305 QTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLV 364

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 365 VVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 424

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            T + P +   ++   L+  L    +A+++  ++             R   L     + +
Sbjct: 425 LTYVGPHDD-KQIAAALRRELLRDGQAFYVHNRVSSIDA-----AAARVRELVPE--ARV 476

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+M +   E+ +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 477 VVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 536

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G +
Sbjct: 537 LRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNV 596

Query: 634 LGIKQSGMPKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           LGI+QSG    +     +      LE  R   +         T+   + +RI L
Sbjct: 597 LGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDL 650


>gi|196229584|ref|ZP_03128449.1| transcription-repair coupling factor [Chthoniobacter flavus
           Ellin428]
 gi|196226816|gb|EDY21321.1| transcription-repair coupling factor [Chthoniobacter flavus
           Ellin428]
          Length = 1082

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 138/457 (30%), Positives = 231/457 (50%), Gaps = 28/457 (6%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           L +  + +  +G     + K  ++   +  F  T  Q +AI     DM  +  M R++ G
Sbjct: 493 LAVHAERETAVGYAFPPDNKWQREFESSFLFKETVDQLTAIAASKADMESERPMDRLICG 552

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VA+ A   +V  G Q  I+ P  +LA+QHY   ++   +  + VE+++    
Sbjct: 553 DVGFGKTEVAIRAAFKSVMGGKQVAILVPTTVLAEQHYRNFRERMSDYPVTVELLSRFRT 612

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            A +RK ++ +A G+  I++GTH L    I +  L LV++DE+ RFGV  + +  +    
Sbjct: 613 AAEQRKTVQGLADGRVDIVVGTHRLISKDILFKDLGLVVIDEEQRFGVLHKERFKEMFKL 672

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             +L ++ATPIPRTL L+ +G  D+S I   P  R P +T+I P +    + + +   LS
Sbjct: 673 VDMLTLSATPIPRTLYLSLMGAKDMSTIETPPLNRIPTETLICPYDER-IIRDAINRELS 731

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
              + Y++  ++   +      + ++   L     +   I HG+M + + E VM  F +G
Sbjct: 732 RQGQVYFLHNRVHSIE-----MMRDKIKKLCPK--ARCVIGHGQMDEHELEDVMHEFVSG 784

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +LI+TT+IE G+D+ +A+ III+ A+ FGLA L+QLRGRVGR +  +   LL    +
Sbjct: 785 AADVLISTTIIESGLDIPNANTIIIDRADRFGLADLYQLRGRVGRAQHKAYAYLLLPREM 844

Query: 601 SKN--SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
                +  R++ +K       GF IA  DL+ R  G ILG  QSG    +     L+ +L
Sbjct: 845 MTQGEARRRINAIKQYSSLGAGFKIAMRDLEIRGAGNILGTAQSGHIVNIGFD--LYCAL 902

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           L+ A             +  ++G+ +R  L +    +
Sbjct: 903 LKQA-------------IAKLKGEKVRARLEVVLRTD 926


>gi|297193946|ref|ZP_06911344.1| transcriptional-repair coupling factor [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152012|gb|EFH31470.1| transcriptional-repair coupling factor [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 1070

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 137/488 (28%), Positives = 231/488 (47%), Gaps = 22/488 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +WT          + +A  +  L          G     +    +++     +  T  Q 
Sbjct: 469 DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGPDTPWQRELEDAFAYVETPDQL 526

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 527 STIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 586

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +      ++   ++     A  +  LE +  G   I+IGTH LF    ++  L LV
Sbjct: 587 GTFSERYSQFPVVTRALSRFQSDADAKATLEGLRDGSVDIVIGTHRLFSSETKFKDLGLV 646

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 647 IVDEEQRFGVEHKEQLKKLRADVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 706

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            T + P     ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 707 LTFVGPYEE-KQIGAAVRRELLREGQVFYIHNRVESID-----RAAARLREIVPE--ARI 758

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 759 ATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESGIDIANANTLIVERGDNFGLSQLHQ 818

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGR  E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 819 LRGRVGRSRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 878

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIA----RKDAKHILTQDPDLT-SVRGQSIRILLYLY 688
           LG +QSG         +L+  ++  A    R   +  + ++P L   +       + + Y
Sbjct: 879 LGGEQSGHI--AGVGFDLYVRMVGEAVADYRASLEGGVEEEPPLEVKIELPVDAHVPHDY 936

Query: 689 QYNEAFQF 696
              E  + 
Sbjct: 937 APGERLRL 944


>gi|94986749|ref|YP_594682.1| transcription-repair coupling factor [Lawsonia intracellularis
            PHE/MN1-00]
 gi|94730998|emb|CAJ54361.1| transcription-repair coupling factor (superfamily II helicase)
            [Lawsonia intracellularis PHE/MN1-00]
          Length = 1155

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 147/498 (29%), Positives = 245/498 (49%), Gaps = 21/498 (4%)

Query: 211  NPRKAK--DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
             P+  +     W +   +     E +A  I  +   ++  K    P    G + ++   +
Sbjct: 547  FPQLDRLGSTSWQASKDKAKKSIEKVAEDIIEMYAWRKVAKGFTYP--PVGDLYREFEAS 604

Query: 269  IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
              F  T  Q  AI+D+L DM +   M R++ GDVG GKT VAL A   A   G Q  ++ 
Sbjct: 605  FGFEETPDQARAIQDVLADMEKSEPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLC 664

Query: 329  PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
            P  +LA+QHY   +       I V +++  +P   +++  +  + GQ  +++GTH L  D
Sbjct: 665  PTTVLAEQHYYTFRSRLSGFGINVGLLSRFVPLQKQKEIFKAASSGQIDVLVGTHKLLSD 724

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            S+    L L+I+DE+ RFGV+ + KL +      VL +TATPIPRTL L+  G  ++S I
Sbjct: 725  SVSLPNLGLLILDEEQRFGVKHKEKLKKMKKNVDVLTLTATPIPRTLQLSMSGICELSVI 784

Query: 449  TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
               P  RKP+ T II  N+ +++ E L+  L+   + +W+  +++  ++           
Sbjct: 785  ETAPPERKPVATAIIKKNK-EKLKEILERELAREGQVFWVYNRVQGLEQIVNF-----VK 838

Query: 509  SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
             L     + + + HG+M +   E  + +F +    +L+ T +IE G+D   A+ +I++ A
Sbjct: 839  ELVPE--ARVGVAHGQMPEKQLEENIHAFWHAELDILVCTAIIESGLDFPRANTLIVDQA 896

Query: 569  EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEE 623
              FGL QL+QLRGRVGR +  +  + +      LS+ +  RL ++   +    GF +A E
Sbjct: 897  HMFGLGQLYQLRGRVGRSDRQAYAVFVISDLESLSEQARERLRIILELDYLGAGFQVAME 956

Query: 624  DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK-HILTQDPDLTSVRGQSIR 682
            DL+ R  G ILG  QSG         EL+  +LE A    K   +T  P+     G +  
Sbjct: 957  DLRIRGAGNILGEAQSGHIS--RVGIELYLEMLEEAVTKLKGEGVTSYPETELTLGLTAH 1014

Query: 683  I-LLYLYQYNEAFQFIRA 699
            I   Y+   +E  ++ +A
Sbjct: 1015 IPQNYISDSHERLRWYKA 1032


>gi|289428412|ref|ZP_06430098.1| transcription-repair coupling factor [Propionibacterium acnes J165]
 gi|289158384|gb|EFD06601.1| transcription-repair coupling factor [Propionibacterium acnes J165]
          Length = 1198

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 232/489 (47%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 589  DWRKRKARARKAVREIAAELIKLYAARQA--TKGHAFGPDTAWQRELEGAFAYVETPDQL 646

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 647  TTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 706

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 707  QTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEVEFKDLGLV 766

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 767  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 826

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +++  +        L     + I
Sbjct: 827  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAK-----LRELVPE--ARI 878

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 879  VTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQ 938

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 939  LRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNL 998

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 999  LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETE 1056

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1057 RLRLEMYKR 1065


>gi|300726486|ref|ZP_07059932.1| transcription-repair coupling factor [Prevotella bryantii B14]
 gi|299776214|gb|EFI72778.1| transcription-repair coupling factor [Prevotella bryantii B14]
          Length = 1150

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 132/441 (29%), Positives = 223/441 (50%), Gaps = 18/441 (4%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +  L  +++ +   G   + +G +  ++  +  +  T  Q  A +++  DM +   M R+
Sbjct: 552 LIKLYAKRKRE--KGFAYSKDGYMQHELEASFLYEDTPDQSKATQEVKADMEKDRPMDRL 609

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA+ A   A   G Q  ++ P  +LA QHY+  KK  +   + +E ++ 
Sbjct: 610 VCGDVGFGKTEVAMRAAFKAACDGKQVAVLVPTTVLAYQHYQSFKKRLEGFPVTIEYLSR 669

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                  +  LE +  G+  IIIGTH L   +++++ L L+I+DE+ +FGV  + KL + 
Sbjct: 670 ARSTKATKAVLENLESGKVDIIIGTHKLIGKNVKWHDLGLLIIDEEQKFGVSTKEKLRKI 729

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            T    L M+ATPIPRTL  + +G  D+S +   P  R PI T +      + + + +  
Sbjct: 730 KTNVDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIHTELTTYGH-EVIADAINF 788

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            +S   + Y++  +I   +E                  + IAI HG+M   + E ++  F
Sbjct: 789 EMSRNGQVYFVNNRISNLQEIANLIH-------KYVPDARIAIGHGQMKPDELEEILMGF 841

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L++TT++  GID+ +A+ III  A HFGL+ LHQ+RGRVGR    + C LL  
Sbjct: 842 MNYDYDVLLSTTIVANGIDISNANTIIINEAHHFGLSDLHQMRGRVGRSNRKAFCYLLAP 901

Query: 598 PP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMP---KFLIAQP 649
           P   LS ++  RL  L+       GF +A +DL  R  G +LG +QSG      +   Q 
Sbjct: 902 PKSVLSVDARRRLEALETFSELGSGFNLAMQDLDIRGAGNLLGSEQSGFMADLGYETYQK 961

Query: 650 ELHDSLLEIARKDAKHILTQD 670
            L+ ++ E+   + + + + +
Sbjct: 962 ILNQAITELKNDEFQDLYSDE 982


>gi|291278661|ref|YP_003495496.1| transcription-repair coupling factor [Deferribacter desulfuricans
           SSM1]
 gi|290753363|dbj|BAI79740.1| transcription-repair coupling factor [Deferribacter desulfuricans
           SSM1]
          Length = 1111

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 147/459 (32%), Positives = 239/459 (52%), Gaps = 18/459 (3%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P+ +          +  AY       + +L +  + K   G      G+I + +    P+
Sbjct: 510 PKLSNLQSNRWKKLKEQAYKSAKKLAVDILKIYAERKSRRGFAFTKSGEILKTVELRFPY 569

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q   I ++  DM  +  M R++ GDVG GKT VA+ A A AVE   Q  I+AP  
Sbjct: 570 EETEDQIVVINEVFNDMESETPMERLVCGDVGFGKTEVAIRAAAKAVENYKQVAILAPTT 629

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +L +QHY+   +  ++  + ++ I+        ++ALER+  G+  IIIGTH L    ++
Sbjct: 630 VLVRQHYQNFIERFKDMPVEIDYISRFKTSREIKRALERLKKGEIDIIIGTHRLLSKDVE 689

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +Y L L+IVDE+ RFGV  + K+    +   VL +TATPIPRTL L+  G  D+S I   
Sbjct: 690 FYDLGLLIVDEEQRFGVNHKEKIKALKSNIDVLTLTATPIPRTLQLSLSGLRDMSIINTP 749

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R+P+   II  +  +E+   +   L  G + Y++  ++E+ ++  +         L 
Sbjct: 750 PQDREPVSIKIIKND--EELNNAILKELKRGGQVYFLHNKVEDIEKIAY--------MLK 799

Query: 512 EHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           E F  S+ +I HG+M     + V + F  G   +L+ TT+IE G+D+ +A+ I+I NA  
Sbjct: 800 EKFPLSNTSIAHGQMDAKVLDEVFEKFYQGDVDILVCTTIIENGLDIANANTIVINNAHT 859

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDL 625
           FGLAQL+QL+GRVGRG +   C L    +  +++ +  RL ++    D   GF I+  DL
Sbjct: 860 FGLAQLYQLKGRVGRGNKRGYCYLRIPQNAKINEVARKRLKIISQLSDLGSGFKISTYDL 919

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           + R  G++LG +QSG    +    EL+  ++  A  + K
Sbjct: 920 QIRGAGDLLGAEQSGF--VVNVGYELYVQMINEAINELK 956


>gi|33861396|ref|NP_892957.1| transcriptional-repair coupling factor [Prochlorococcus marinus
            subsp. pastoris str. CCMP1986]
 gi|33633973|emb|CAE19298.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
            subsp. pastoris str. CCMP1986]
          Length = 1171

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 136/488 (27%), Positives = 238/488 (48%), Gaps = 22/488 (4%)

Query: 219  EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EW     + R    ++    + L   R++ K  I      +G   +++  + P+  T  Q
Sbjct: 563  EWLKIKDKNRKIIKKVALDILKLYAKREKLKGHI---FPEDGPWQKELEESFPYQATPDQ 619

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +A+K++  DM     M R++ GDVG GKT VA+ A+  A+ +G Q +++AP  ILAQQH
Sbjct: 620  ITAVKEVKIDMESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQVILLAPTTILAQQH 679

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            +           I V ++        ++     + + +  +++ TH +    I+   L L
Sbjct: 680  WRTFYNRFSPYPIKVSLLNRFKTNTEKKDIYNGLKNNKIDLVVATHQILGKEIEIKNLGL 739

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            +++DE+ RFGV+Q+ K+    T   VL ++ATPIPRTL ++  G   +S +   P  R+ 
Sbjct: 740  LVIDEEQRFGVRQKEKIKNIKTNIDVLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRS 799

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
            IKT +  I+ +D +   +   L  G + +++ P+I +          +  N L   F   
Sbjct: 800  IKTYLSEID-MDVIRTAISQELDRGGQIFYVLPRISDID--------QAVNKLKNMFKDL 850

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               + HG+M++ID E+ M +F NG   L+I TT+IE G+D+   + I+IE++  FGL+QL
Sbjct: 851  KYIVAHGQMNEIDLENAMIAFNNGEVDLMICTTIIESGLDIPRVNTIVIEDSHKFGLSQL 910

Query: 577  HQLRGRVGRGEEISSCILLYH-----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
            +QLRGRVGR    +   L Y         SK     +        G+ +A +D++ R  G
Sbjct: 911  YQLRGRVGRSGIQAHAWLFYPNINKINEASKQRLKAIKDFSELGSGYQLAMKDMEIRGVG 970

Query: 632  EILGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLY 688
             +LG +QSG    +        LH+++ EI  ++   +     DL          +L   
Sbjct: 971  SLLGEEQSGKVNAIGYDLYIEMLHEAISEINGQEVPEVNDTQVDLPINAFIPGTWILNRE 1030

Query: 689  QYNEAFQF 696
            +  +A+++
Sbjct: 1031 EKLDAYKY 1038


>gi|297620477|ref|YP_003708614.1| putative transcription-repair-coupling factor [Waddlia chondrophila
           WSU 86-1044]
 gi|297375778|gb|ADI37608.1| putative transcription-repair-coupling factor [Waddlia chondrophila
           WSU 86-1044]
          Length = 1092

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 149/454 (32%), Positives = 232/454 (51%), Gaps = 20/454 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +S  ++     E      A  L++     + + G     +    Q      PFS T+ Q
Sbjct: 519 GSSRWKKTRETTERAILGYASDLLKTYANRELKGGFAFPEDSPDIQAFEEEFPFSETEDQ 578

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIGILAQQ 336
            +A+  I +DM+  + M R++ GDVG GKT VA+ A   AV  G  Q  ++ P  +LA Q
Sbjct: 579 LNAVACIKKDMTSPSAMDRLVCGDVGYGKTEVAMRAAFKAVMDGGKQVAMLVPTTVLAMQ 638

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HYE   +  +N  I + +++        R+ LE +A+G   I+IGTH L  + + ++ L 
Sbjct: 639 HYENFIERMRNFPINISVLSRFRSTKQTRQTLEGVANGTVDIVIGTHRLISEDVSFHNLG 698

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+I+DE+ RFGV+ +  L +  T    L ++ATPIPRTL ++ +G  D+S I   P  R+
Sbjct: 699 LIIIDEEQRFGVRAKEHLKKAKTGVDCLTLSATPIPRTLYMSLIGARDMSVINTPPQDRQ 758

Query: 457 PIKTVIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           PIKTVI   +  DE+++       +   +AY I  ++E        ++  R   L     
Sbjct: 759 PIKTVISEPS--DELLKNALLREFARDGQAYLIHNRVETLP-----NMYRRVKKLLP--Q 809

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I I+HG+M   + ++V   FKNG   +LIATT++E GID+ +A+ I+I+ A+ FGLA 
Sbjct: 810 ARIDIVHGQMKPAEIDTVFHHFKNGEIDILIATTIVESGIDIPNANTILIDRADRFGLAD 869

Query: 576 LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
           L+QLRGRVGR    +    L      L + S  RL  L  +     G  +A  DL+ R  
Sbjct: 870 LYQLRGRVGRWNRRAFAYFLIPKFHSLPEISRKRLGALAESSGYGGGMKLAMRDLEIRGA 929

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G+ILG +QSG          L+  LL+   K  +
Sbjct: 930 GDILGTEQSGHVS--AVGFHLYCKLLKRTIKALE 961


>gi|289424265|ref|ZP_06426048.1| transcription-repair coupling factor [Propionibacterium acnes SK187]
 gi|289154962|gb|EFD03644.1| transcription-repair coupling factor [Propionibacterium acnes SK187]
          Length = 1198

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 232/489 (47%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 589  DWRKRKARARKAVREIAAELIRLYAARQA--TKGHAFGPDTAWQRELEGAFAYVETPDQL 646

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 647  TTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 706

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 707  QTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEVEFKDLGLV 766

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 767  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 826

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +++  +        L     + I
Sbjct: 827  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIEKTAAK-----LRELVPE--ARI 878

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 879  VTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQ 938

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 939  LRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNL 998

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 999  LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETE 1056

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1057 RLRLEMYKR 1065


>gi|83952089|ref|ZP_00960821.1| transcription-repair coupling factor [Roseovarius nubinhibens ISM]
 gi|83837095|gb|EAP76392.1| transcription-repair coupling factor [Roseovarius nubinhibens ISM]
          Length = 1153

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 234/450 (52%), Gaps = 17/450 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        +  E    +      P+  T
Sbjct: 539 DRLGGGAWQAKKAKLKERIREMADRLIRVAAERALRKAPVLEPEHHAWEAFSARFPYQET 598

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI D+++D+     M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA
Sbjct: 599 DDQLGAISDVMEDLGSGRPMDRLICGDVGFGKTEVAMRAAFVAAMSGQQVAVIAPTTLLA 658

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY+   +  +   + V  ++  +      K  E +A G+  I++GTHAL   S+++  
Sbjct: 659 RQHYQSFAERFRGFPVNVAPLSRFVSAGEATKTREGLARGKVDIVVGTHALLAKSVRFEN 718

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+ RFGV  + +L Q  +  HVL ++ATPIPRTL L+  G  D+S I   P  
Sbjct: 719 LGLLIIDEEQRFGVAHKERLKQMRSDVHVLTLSATPIPRTLQLSLSGVRDLSIIGTPPVD 778

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   +R+  V E L      G +++++ P++ +  E       E         
Sbjct: 779 RLSIRTYVSEFDRV-TVREALLREHYRGGQSFYVVPRVSDLPEIEEFLRNEV-------P 830

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + A+ HG+M+  + ++ M++F +G   +L+ATT++E G+D+  A+ +I+  A+ FGLA
Sbjct: 831 EVTFAVAHGQMAAGELDARMNAFYDGKYDVLLATTIVESGLDIPRANTMIVHRADMFGLA 890

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
           QL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R 
Sbjct: 891 QLYQIRGRVGRSKLRAYAYLTTKPRVKLTPAAEKRLRVLSSLDTLGAGFTLASQDLDIRG 950

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            G +LG +QSG  +      EL+ S+LE A
Sbjct: 951 AGNLLGEEQSGQMRD--VGYELYQSMLEEA 978


>gi|313159822|gb|EFR59178.1| transcription-repair coupling factor [Alistipes sp. HGB5]
          Length = 1108

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 137/486 (28%), Positives = 232/486 (47%), Gaps = 18/486 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + ++ ++  L  ++  K   G     +  +  ++  +  +  T  Q++
Sbjct: 501 WQKLKNATKKAVKDISRELIALYAKR--KASKGFAFTPDSYLQHELEASFQWEDTPDQQT 558

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            +  + +DM     M R++ GDVG GKT VA+ A   A   G Q  ++ P  ILA QHY 
Sbjct: 559 TVAAVKKDMESDQPMDRLVCGDVGFGKTEVAIRAAFKAAVDGKQVAVLVPTTILALQHYR 618

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +N  + VE +          +    +  G+  I+IGTH +    I +  L L+I
Sbjct: 619 SFSERLRNFPVRVEYLNRTKTAKEVSQIRADLEAGRIDILIGTHKILGKQIVFRDLGLLI 678

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KLTQ A     L +TATPIPRTL  + +G  D+S I+  P  R+PI 
Sbjct: 679 IDEEQKFGVAAKEKLTQLAVNVDTLTLTATPIPRTLQFSLMGSRDLSVISTPPPNRQPIV 738

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T     +  + + + ++  L+ G + Y++  ++E+                     + + 
Sbjct: 739 TESHVFSE-EIIRDAVETELARGGQVYFVHNRVEDLMTMQGLIT-------RICPKARVG 790

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M     E ++  F  G   +L+ATT++E GID+ +A+ II+ NA++FGL+ LHQL
Sbjct: 791 VGHGKMPAEKLERLIMDFIYGEFDVLVATTIVENGIDIPNANTIIVNNAQNFGLSDLHQL 850

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   LS ++  RL  ++   D   GF IA +DL  R  G +L
Sbjct: 851 RGRVGRSNQKAYCYLLSPPDELLSSDARRRLRAIEEFSDLGSGFNIAMQDLDIRGAGNLL 910

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           G +QSG    +    E +  ++  A  + +        L     + +  L Y+   +   
Sbjct: 911 GAEQSGFIADI--GFETYQKIMNEAIAELRAEGLHVAGLNDSEQEVVEQLRYIDDAHIEI 968

Query: 695 QFIRAG 700
           + + AG
Sbjct: 969 E-VEAG 973


>gi|225378012|ref|ZP_03755233.1| hypothetical protein ROSEINA2194_03672 [Roseburia inulinivorans DSM
           16841]
 gi|225210165|gb|EEG92519.1| hypothetical protein ROSEINA2194_03672 [Roseburia inulinivorans DSM
           16841]
          Length = 504

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 150/464 (32%), Positives = 227/464 (48%), Gaps = 24/464 (5%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR      L + +   +G+G K +    KI      N     DL+ Y P +++       
Sbjct: 1   MR------LNSSIKEVKGIGDKTAGLFLKI------NIETIRDLISYFPRTYVQFPEIKH 48

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG---EITLLFFYRKTEMLKNVF 117
             E+ E     + G I Q      ++ R  +I +   TG    + L++F  +   +KN  
Sbjct: 49  PDEVVEGETAAVIGQIRQTPVV--KRVRSMQITVTSITGMGKRLELVWF--RLPYIKNSL 104

Query: 118 FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVE 177
             G      GK++    R +M  P        +    L+  VY+LP GLS  L  K    
Sbjct: 105 HPGGTYVFYGKVQHKNGRFVMEQPAIYTPEKYEAMEHLLLPVYTLPKGLSNQLMLKAERS 164

Query: 178 ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
            L    +  +++  +L +K        A   IH P    D E    AR+RL +DEL    
Sbjct: 165 VLEEEHLFRDYLPTELREKHQLCEYNYAIKQIHFP---DDMETLIEARKRLVFDELFLFI 221

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + L   +++ +KE            ++++  +P+  T +Q  A+ ++  DM     M R+
Sbjct: 222 LNLQYQKEKKEKEKNQFSFQSDDFVEQLIEKLPYKLTNAQLRALSEVRADMRSDYVMQRL 281

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI--IVEII 355
           +QGDVGSGKT++A +AMA     G Q+ IMAP  +LA+QHYE  +   +   +   V +I
Sbjct: 282 IQGDVGSGKTIIAFLAMADTAHNGCQSAIMAPTEVLARQHYESFQSMCEIFGLDFPVILI 341

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           TG+M    ++ A + I      +IIGTHAL Q+ + Y  L LVI DEQHRFGV+QR   +
Sbjct: 342 TGSMTAKQKKLAYQEILDHPDALIIGTHALIQEKVIYQNLALVITDEQHRFGVKQREIFS 401

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +K T PH+L+M+ATPIPRTL +   GD+DIS + E PA R PIK
Sbjct: 402 EKGTKPHILVMSATPIPRTLAIILYGDLDISVVDEVPAKRLPIK 445


>gi|323342263|ref|ZP_08082495.1| transcription-repair-coupling factor [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463375|gb|EFY08569.1| transcription-repair-coupling factor [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 1138

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 137/505 (27%), Positives = 250/505 (49%), Gaps = 33/505 (6%)

Query: 164 TGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP 223
            G+  D  + +  +       L ++   +L++K  F S   A   +           TS 
Sbjct: 496 EGIHKDFMRILYRDGDELFVPLEQF---NLVRK--FMSREAASVRL-------SKLGTST 543

Query: 224 ARERLAYDELLAGQIALLL--MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            ++     +     +A  L  +        G   + + +  ++      +  T+ Q++AI
Sbjct: 544 WQKNKERIKQDVADVADKLVTLYSTRMDASGFAFSPDTEYQKQFEDAFEYELTQDQKTAI 603

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +I +DM +   M R+L GDVG GKT VA+ A   A     Q V + P  IL+QQH   +
Sbjct: 604 DEIKRDMERDVPMDRLLCGDVGFGKTEVAIRAAFKAFVDHKQVVFLCPTTILSQQHARTL 663

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
           K+   +  + +E++   +    + + ++R+  G+  I++GTH +    +++  L L+I+D
Sbjct: 664 KERLSDFPVTIEVLNRFVSDKEKNEIIQRVKDGKVDILVGTHRVLSRDVKFKDLGLLIID 723

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+ RFGV+ + ++ +   +  VL ++ATPIPRTL ++ +G   +S++   P+ R P+ T 
Sbjct: 724 EEQRFGVEHKERIKEFKVSVDVLSLSATPIPRTLQMSLIGLRSLSQLNMPPSNRLPVMTY 783

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--ESNFRSVVERFNSLHEHFTSSIA 519
           II  N+   + + +   L+   + +++   +E+     S   + VE  N         +A
Sbjct: 784 IIEKNQ-KTINDIISKELNRDGQVFYLFNNVEQIYSVASVIANHVEAAN---------VA 833

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           ++HG+M   + E VM  F +    +L+ TT+IE GID+ +A+ II++NA  FGL+QL+Q+
Sbjct: 834 VVHGQMERHEIEDVMIRFISKEINVLVCTTIIETGIDIPNANTIIVDNAHRFGLSQLYQI 893

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           +GRVGR + ++    +      L++ +  RL  +K       G+ IA  DL  R  GE+L
Sbjct: 894 KGRVGRSDRLAYAYFVVPNKRGLTELAQKRLQAIKEFTQLGSGYKIAMRDLTIRGAGELL 953

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIA 659
           G  QSG         +L+  LL+ A
Sbjct: 954 GGNQSGFIDT--VGIDLYVQLLKEA 976


>gi|22536193|ref|NP_687044.1| transcription-repair coupling factor [Streptococcus agalactiae
           2603V/R]
 gi|25010083|ref|NP_734478.1| transcription-repair coupling factor [Streptococcus agalactiae
           NEM316]
 gi|77414464|ref|ZP_00790614.1| reticulocyte binding protein [Streptococcus agalactiae 515]
 gi|22533010|gb|AAM98916.1|AE014191_8 transcription-repair coupling factor [Streptococcus agalactiae
           2603V/R]
 gi|23094434|emb|CAD45653.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159474|gb|EAO70635.1| reticulocyte binding protein [Streptococcus agalactiae 515]
          Length = 1165

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 150/452 (33%), Positives = 235/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
              D  +    +      E +A  +  L    +  +  G   + +  +      +  +  
Sbjct: 555 TLNDGRFKKAKQRVAKQVEDIADDLLKLYA--ERSQLQGFAFSPDDNMQNDFDNDFAYVE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I QDM     M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 613 TEDQLRSIKEIKQDMEGNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQH+E  K+   N  + V++++    +  +   L+R++ GQ  IIIGTH L    + + 
Sbjct: 673 AQQHFENFKERFSNYPVTVDVLSRFRSKKEQTDTLKRLSKGQVDIIIGTHRLLSQDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 733 DLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 792

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++           ++ + L E 
Sbjct: 793 NRYPVQTYVLETN-PGLVREAIIREIDRGGQVFYVYNKVDTID--------QKVSELQEL 843

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + +ENA+H G
Sbjct: 844 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENADHMG 903

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 904 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEISEKRLDAIKGFTELGSGFKIAMRDLSI 963

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 964 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 993


>gi|320334953|ref|YP_004171664.1| transcription factor CarD [Deinococcus maricopensis DSM 21211]
 gi|319756242|gb|ADV67999.1| transcription factor CarD [Deinococcus maricopensis DSM 21211]
          Length = 1042

 Score =  336 bits (862), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 159/542 (29%), Positives = 258/542 (47%), Gaps = 46/542 (8%)

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE---WTSPARERLAYDELLAGQIALLLMR 244
           ++  +L      P +        +P      +   W     +     E +A ++ +    
Sbjct: 405 YLPIEL-----LPVLRRHPGTTDDPPNLSSLDKKDWAKAREKARKNAEKVAAKLLVQYAA 459

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +Q     G       +  Q+I  N PF  T  Q +A+K+  +D+   + M R++ GDVG 
Sbjct: 460 RQ--VTPGYAFTPMPEWDQQIEENFPFELTADQVTALKETYRDLEADHPMDRLIAGDVGF 517

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT VAL A    V  G Q  I+ P  +LA+QH     +  +N  + VE I+        
Sbjct: 518 GKTEVALRAAHRVVGHGKQVAILVPTTLLAEQHTSTFVERFKNLPVRVEGISRFTSTRQA 577

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT--------- 415
              L  +A G+  +IIGTH L  D IQ+  L L+IVDE+HRFGV Q+ KL          
Sbjct: 578 NAILADLAQGKVDVIIGTHRLLSDDIQFKNLGLIIVDEEHRFGVNQKEKLKALQNLPELD 637

Query: 416 -------------QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
                        + A A  VL ++ATPIPRTL ++ +G  D+S I   P GRKPI+TV+
Sbjct: 638 KNGAPKKGKRALPEDAVAVDVLSLSATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTVL 697

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
            P + +  V   +   +    K ++I  ++      +         +L     + + + H
Sbjct: 698 APFDPM-TVRNAIVSEIDRNGKVFYIHDRVASIGARSLY-----LRTLVPE--ARVGVAH 749

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M++ + E +M  F+ G   +L+ATT++E G+D+ +A+ I+IE ++  GLAQL+QLRGR
Sbjct: 750 GQMNEEELEEIMLGFEEGAFDVLLATTIVETGLDIPEANTILIERSDRLGLAQLYQLRGR 809

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQS 639
           VGR    +   L Y P L++N+  RL  + + +D   G  +AE+D++ R  G ILG +Q 
Sbjct: 810 VGRRSVDAYAYLFYPPRLTENASRRLWAIADLQDLGTGHKLAEKDMEIRGVGNILGEEQH 869

Query: 640 GMPKFLIAQPELHDSLLEIARKDAK-HILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
           G  +      E++  LL  A    K   L + P ++     + R+    +  +E  +   
Sbjct: 870 G--QVQAVSIEVYTELLAEAVAKLKGEPLKEAPTVSVDLPVNARLTPEYFGNDEEARIAT 927

Query: 699 AG 700
            G
Sbjct: 928 YG 929


>gi|332674949|gb|AEE71765.1| transcription-repair-coupling factor [Propionibacterium acnes 266]
          Length = 1222

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 230/489 (47%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 613  DWRKRKARARKAVREIAAELIKLYAARQA--TKGHAFGPDTAWQRELEGAFAYVETPDQL 670

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 671  TTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 730

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 731  QTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEVEFKDLGLV 790

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 791  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 850

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +         +   L     + I
Sbjct: 851  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIE-----KTAAKLRELVPE--ARI 902

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 903  VTAHGQMNEKQLEQIMVDFWERHADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQ 962

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 963  LRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNL 1022

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 1023 LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETE 1080

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1081 RLRLEMYKR 1089


>gi|282859198|ref|ZP_06268320.1| transcription-repair coupling factor [Prevotella bivia JCVIHMP010]
 gi|282588017|gb|EFB93200.1| transcription-repair coupling factor [Prevotella bivia JCVIHMP010]
          Length = 1169

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 133/451 (29%), Positives = 230/451 (50%), Gaps = 19/451 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +     + +A  +  L  ++  + E G   + +  +  ++  +  +  T  Q  
Sbjct: 559 WDRLKEKAKKRIKDIARDLIKLYAKR--RHEKGFAFSPDSFMQHELEASFLYEDTPDQLK 616

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D+ QDM     M R++ GDVG GKT VA+ A   A     Q  ++ P  +LA QHY+
Sbjct: 617 ATQDLKQDMESARPMDRLVCGDVGFGKTEVAIRAAFKAAVDNKQVAVLVPTTVLAFQHYK 676

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +   ++  + V+ ++        ++ LE +A G+ +I++GTH L   S+++  L L+I
Sbjct: 677 SFQSRLKDMPVRVDYLSRARSTKQTKQILEDLAEGKINILVGTHKLLGKSVKWQDLGLLI 736

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q  T    L M+ATPIPRTL  + +G  D+S +   P  R PI+
Sbjct: 737 IDEEQKFGVSTKEKLRQIKTNVDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQ 796

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T I+  +  + + + +   +S   + +++  +I   +        +    +  +     +
Sbjct: 797 TEIVDFSH-EIIADAINFEMSRNGQVFFVNDRIGNLQ--------DLAAMIRRYVPDCRV 847

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           AI HG+M   + E ++  F N    +L++TT++E GID+ +A+ III +A  FGL+ LHQ
Sbjct: 848 AIGHGQMKPEELEEILLGFMNYDYDVLLSTTIVENGIDISNANTIIINDAHRFGLSDLHQ 907

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           +RGRVGR  + + C L+  P   L+  +  RL  L+   D   GF +A +DL  R  G +
Sbjct: 908 MRGRVGRSNKKAFCYLVAPPLASLTTEARRRLEALETFSDLGSGFSLAMQDLDIRGAGNL 967

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG +QSG  + L    E +  +L  A  + K
Sbjct: 968 LGSEQSGFMEDL--GYETYQKILSQAVSELK 996


>gi|160931462|ref|ZP_02078858.1| hypothetical protein CLOLEP_00295 [Clostridium leptum DSM 753]
 gi|156869527|gb|EDO62899.1| hypothetical protein CLOLEP_00295 [Clostridium leptum DSM 753]
          Length = 1149

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 222/449 (49%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W        +  + +A ++  L    +  K  G     +    +       +  T+ Q 
Sbjct: 564  DWQKAKARVRSAVKDIAKELIKLYA--ERMKLKGHAFPPDTGWQRDFESRFEYEETEDQL 621

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I++I +DM ++  M R+L GDVG GKT VAL A    V    Q  ++ P  ILA QHY
Sbjct: 622  RCIQEIKEDMEKEQPMDRLLCGDVGFGKTEVALRAAFKCVTDSKQCALLVPTTILAWQHY 681

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            + + +  +   I VEI++       + + L+++  G+  +IIGTH L Q  +Q+  L LV
Sbjct: 682  QTVTQRFEGFPIKVEILSRFRTPKQQAEILKQLKRGEIDMIIGTHRLVQKDVQFRDLGLV 741

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV Q+ +         VL ++ATPIPRTL +   G  D+S + E P  R P+
Sbjct: 742  IIDEEQRFGVAQKERFKSVTKNVDVLTLSATPIPRTLNMALSGIRDMSSLEEAPQDRHPV 801

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            +T ++  ++   + + ++  L  G + Y++  ++E  +    R          +   + +
Sbjct: 802  QTYVLEYDQ-AVINDAVRRELRRGGQVYYLHNKVESIERVAARLQ-------AQIPEAKV 853

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M + +   V          +L+ TT+IE G+DV + + IIIE+A+H GL+QLHQ
Sbjct: 854  GFGHGKMPEGELSEVWRRVMEQEINVLVCTTIIETGVDVPNVNTIIIEDADHMGLSQLHQ 913

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            +RGRVGR    +   L +     LS+ S  RL+ ++       GF IA  DL+ R  G I
Sbjct: 914  IRGRVGRSSRRAYAYLTFTRNKVLSEISQKRLAAIREFTEFGSGFKIAMRDLELRGAGNI 973

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +Q G  + +     ++  LL  A  +
Sbjct: 974  LGGEQHGHMETVGYD--MYLRLLGEAVSE 1000


>gi|325297801|ref|YP_004257718.1| transcription-repair coupling factor [Bacteroides salanitronis DSM
           18170]
 gi|324317354|gb|ADY35245.1| transcription-repair coupling factor [Bacteroides salanitronis DSM
           18170]
          Length = 1122

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 138/450 (30%), Positives = 227/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L  R+  K+E G   + +  +  ++  +  +  T  Q  
Sbjct: 507 WEKMKERTKTKIKDIARDLIKLYSRR--KQEKGFKYSPDSFLQHELEASFLYEDTPDQLK 564

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +++  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 565 ATQEVKADMESDRPMDRLVCGDVGFGKTEVAVRAAFKAVTDNKQVAVLVPTTVLAFQHFQ 624

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K  +     V+ ++         + L+ +A G+  I+IGTH +   S+++  L L+I
Sbjct: 625 TFSKRLEGMPCKVDYLSRARTAKDTSRILKELADGKIDILIGTHKIIGKSVKFKDLGLLI 684

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 685 IDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 744

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + + +   +S   + +++  +I+   E   ++++ER           + 
Sbjct: 745 TEVHTFNE-EIIADAINFEMSRNGQVFFVNNRIQNLPE--LKAMIER-----NIPDCRVC 796

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 797 VGHGQMKPEELEKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 856

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 857 RGRVGRSNKKAFCYLLAPPLSTLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 916

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 917 GAEQSGFIADL--GYETYQKILAEAVTELK 944


>gi|295689522|ref|YP_003593215.1| transcription-repair coupling factor [Caulobacter segnis ATCC
           21756]
 gi|295431425|gb|ADG10597.1| transcription-repair coupling factor [Caulobacter segnis ATCC
           21756]
          Length = 1155

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 143/450 (31%), Positives = 229/450 (50%), Gaps = 15/450 (3%)

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
               R+  A + L      L+ +    + +     +    +  +     P+  T  Q SA
Sbjct: 555 AWQGRKAKAKERLRVMAEGLIQIAAARQLKHVEETDPPHGVFDEFCARFPYEETDDQLSA 614

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I D+L+D+S    M R++ GDVG GKT VAL A      +G Q  I+ P  +LA+QHY+ 
Sbjct: 615 IHDVLEDLSSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVCPTTLLARQHYKT 674

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            K   Q   + V  ++  +      +  E +A+GQ  I++GTHA+    + +  L LVIV
Sbjct: 675 FKDRFQGWPVKVTRLSRLVTGKEAAETREGLANGQFEIVVGTHAILSKQVSFKDLGLVIV 734

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+  FGV+ + KL +     H+L +TATPIPRTL +   G  ++S I   P  R  ++T
Sbjct: 735 DEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIREMSIIATPPVDRLAVRT 794

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            I P + +  + E L      G ++Y++ P+I++ ++       +              +
Sbjct: 795 YISPFDPV-TLREALLREKYRGGQSYYVVPRIKDLEDIEKFLRTQV-------PEVKYVV 846

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG+MS    E VM +F  G   +L+ATT++E G+D+  A+ +I+  A+ FGLAQL+Q+R
Sbjct: 847 GHGQMSATQLEDVMTAFYEGQYDVLLATTIVESGLDIPSANTLIVHRADMFGLAQLYQIR 906

Query: 581 GRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILG 635
           GRVGR +  +   L       L+ ++  RL VL++ +    GF +A  DL QR  G +LG
Sbjct: 907 GRVGRSKARAYAYLTTPVEKSLTLSAEKRLQVLQSLDSLGAGFQLASHDLDQRGGGNLLG 966

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            +QSG  K +    EL+  +LE A  + K 
Sbjct: 967 DEQSGHIKEI--GVELYQQMLEDAVAELKQ 994


>gi|21243585|ref|NP_643167.1| transcription-repair coupling factor [Xanthomonas axonopodis pv.
            citri str. 306]
 gi|21109155|gb|AAM37703.1| transcription-repair coupling factor [Xanthomonas axonopodis pv.
            citri str. 306]
          Length = 1154

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 153/495 (30%), Positives = 244/495 (49%), Gaps = 22/495 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +WT   R+       +A ++  +    + +   G
Sbjct: 531  VAQLHLISRYSGASAETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQA--RRRARAG 588

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ 
Sbjct: 589  LALQVDRAMYEPFAAGFPFEETGDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVR 648

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  + VE+++        +  LE++A
Sbjct: 649  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVA 708

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +IIGTH L Q  +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 709  SGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIP 768

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I   +    + E  +  LS G + Y++   +
Sbjct: 769  RTLNMAMAGLRDLSIIATPPPNRLAVQTFITAWDNT-LLREAFQRELSRGGQLYFLHNDV 827

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +    + L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 828  ESIV-----RMQRDLSELVPE--ARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIE 880

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 881  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEA 940

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  +   
Sbjct: 941  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIRQ-- 996

Query: 668  TQDPDLTSVRGQSIR 682
             + PDL +  G+ +R
Sbjct: 997  GKLPDLDA--GEEVR 1009


>gi|282878269|ref|ZP_06287065.1| transcription-repair coupling factor [Prevotella buccalis ATCC
           35310]
 gi|281299687|gb|EFA92060.1| transcription-repair coupling factor [Prevotella buccalis ATCC
           35310]
          Length = 1153

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 149/545 (27%), Positives = 249/545 (45%), Gaps = 26/545 (4%)

Query: 126 TGKIKKLKNRIIMVHP-HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPV 184
           +GK+      +  + P  +I H   D        +  +PTG +     +II +    + V
Sbjct: 454 SGKMALTLKELQEMEPGDFIVHV--DFGIGKFGGLVRVPTGNTYQEMIRIIYQRGDIVDV 511

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
               + K  + K       E               W     +     + +A  +  L  +
Sbjct: 512 SIHALYK--ISKYRRSDTGE----PPRLSTLGTGAWERLKEKTKKRIKDIARDLIKLYAK 565

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +  + + G   + +  +  ++  +  +  T  Q  A  ++  DM +   M R++ GDVG 
Sbjct: 566 R--RHDKGFSFSADNYMQHELEASFLYEDTPDQVKATAEVKADMEKARPMDRLVCGDVGF 623

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT VA+ A   A     Q  ++ P  +LA QHY+  ++  +   + V+ ++        
Sbjct: 624 GKTEVAIRAAFKAACDSKQVAVLVPTTVLAFQHYKTFQERLRGMPVRVDYLSRARSAKQT 683

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R+ LE +A G+  IIIGTH L   S++++ L L+I+DE+ +FGV  + KL +  T    L
Sbjct: 684 RQVLEDLAAGRIDIIIGTHKLIGKSVKWHDLGLLIIDEEQKFGVSTKEKLRKLKTNVDTL 743

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            M+ATPIPRTL  + +G  D+S +   P  R PI T I      + + + +   +S   +
Sbjct: 744 TMSATPIPRTLQFSLMGARDMSVMRTPPPNRYPIHTEIGVYGH-EIITDAINFEMSRNGQ 802

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            Y++  +I    E            L       +AI HG+M     E+++  F N    +
Sbjct: 803 VYFVNDRISTLPEIEKMI-------LKYVPDCRVAIGHGQMPPEQLETILIDFMNHDYDV 855

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSK 602
           L++T+++E GID+ +A+ III NA   GL+ LHQ+RGRVGR    + C LL  P   L+ 
Sbjct: 856 LLSTSIVENGIDISNANTIIINNAHRIGLSDLHQMRGRVGRSNRKAFCYLLAPPKSVLTP 915

Query: 603 NSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +  RL  L+       GF IA +DL  R  G +LG +QSG  + L    E +  +L  A
Sbjct: 916 EARRRLEALETFSELGSGFNIAMQDLDIRGAGNLLGAEQSGFMEDL--GYETYQKILSQA 973

Query: 660 RKDAK 664
             + +
Sbjct: 974 VTELR 978


>gi|325916554|ref|ZP_08178820.1| transcription-repair coupling factor Mfd [Xanthomonas vesicatoria
            ATCC 35937]
 gi|325537227|gb|EGD08957.1| transcription-repair coupling factor Mfd [Xanthomonas vesicatoria
            ATCC 35937]
          Length = 1155

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 152/501 (30%), Positives = 243/501 (48%), Gaps = 21/501 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +WT   R        +A ++  +    + +   G
Sbjct: 532  VAQLHLISRYSGASAETAPLHSLGGEQWTKAKRRAAEKVRDVAAELLEIQA--RRRARAG 589

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ 
Sbjct: 590  LALQVDRAMYEPFAAGFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVR 649

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  + VE+++        +  LE++A
Sbjct: 650  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVA 709

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +IIGTH L Q  +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 710  SGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIP 769

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I   +    + E  +  LS G + Y++   +
Sbjct: 770  RTLNMAMAGLRDLSIIATPPPNRLAVQTFITAWDNT-LLREAFQRELSRGGQLYFLHNDV 828

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +      L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 829  ESIV-----RMQRDLAELVPE--ARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIE 881

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 882  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEA 941

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  +   
Sbjct: 942  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIRQ-- 997

Query: 668  TQDPDLTS-VRGQSIRILLYL 687
             + PDL +    +   + L++
Sbjct: 998  GKLPDLDAGEEVRGAEVELHV 1018


>gi|78048574|ref|YP_364749.1| transcription-repair coupling factor [Xanthomonas campestris pv.
            vesicatoria str. 85-10]
 gi|78037004|emb|CAJ24723.1| transcription-repair coupling factor [Xanthomonas campestris pv.
            vesicatoria str. 85-10]
          Length = 1154

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 153/495 (30%), Positives = 245/495 (49%), Gaps = 22/495 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +WT   R+       +A ++  +    + +   G
Sbjct: 531  VAQLHLISRYSGASAETAPLHSLGGEQWTRAKRKAAEKVRDVAAELLEIQA--RRRARAG 588

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ 
Sbjct: 589  LALQVDRAMYEPFAAGFPFEETGDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVR 648

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  + VE+++        +  LE++A
Sbjct: 649  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVA 708

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G+  +IIGTH L Q  +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 709  SGEIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIP 768

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I   +    + E  +  LS G + Y++   +
Sbjct: 769  RTLNMAMAGLRDLSIIATPPPNRLAVQTFITAWDNT-LLREAFQRELSRGGQLYFLHNDV 827

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +    + L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 828  ESIV-----RMQRDLSELVPE--ARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIE 880

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 881  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEA 940

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  +   
Sbjct: 941  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIRQ-- 996

Query: 668  TQDPDLTSVRGQSIR 682
             + PDL +  G+ +R
Sbjct: 997  GKLPDLDA--GEEVR 1009


>gi|325922308|ref|ZP_08184088.1| transcription-repair coupling factor Mfd [Xanthomonas gardneri ATCC
            19865]
 gi|325547213|gb|EGD18287.1| transcription-repair coupling factor Mfd [Xanthomonas gardneri ATCC
            19865]
          Length = 1156

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 151/488 (30%), Positives = 239/488 (48%), Gaps = 20/488 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +WT   R+       +A ++  +    + +   G
Sbjct: 533  VAQLHLISRYSGASAETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQA--RRRARAG 590

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ 
Sbjct: 591  LALQVDRAMYEPFAAGFPFEETPDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVR 650

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  + VE+++        +  LE++A
Sbjct: 651  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVA 710

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +IIGTH L Q  +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 711  SGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIP 770

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I   +    + E  +  LS G + Y++   +
Sbjct: 771  RTLNMAMAGLRDLSIIATPPPNRLAVQTFITAWDN-ALLREAFQRELSRGGQLYFLHNDV 829

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +    + L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 830  ESIV-----RMQRDLSELVPE--ARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIE 882

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 883  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSITADAEKRLEA 942

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  +   
Sbjct: 943  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIRQ-- 998

Query: 668  TQDPDLTS 675
               PDL +
Sbjct: 999  GNLPDLDA 1006


>gi|298384566|ref|ZP_06994126.1| transcription-repair coupling factor [Bacteroides sp. 1_1_14]
 gi|298262845|gb|EFI05709.1| transcription-repair coupling factor [Bacteroides sp. 1_1_14]
          Length = 1127

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 227/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        A  + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 508 WEKLKDRTKAKIKDIARDLIKLY--SQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSK 565

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  ++  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 566 ATMEVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 625

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++  ++    VE ++     A  +  L+ +  G+  I+IGTH +    +Q+  L L+I
Sbjct: 626 TFRERLKDLPCRVEYLSRARTAAQSKAVLKGLKEGEVSILIGTHRILGKDVQFKDLGLLI 685

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+  P  R PI+
Sbjct: 686 IDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQ 745

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + + +   +S   + +++  +I    E   ++++ER           +A
Sbjct: 746 TEVHTFNE-EVITDAINFEMSRNGQVFFVNNRIANLPE--LKAMIERH-----IPDCRVA 797

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 798 IGHGQMEPTQLEQIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 857

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+     RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 858 RGRVGRSNKKAFCYLLAPPLSSLTAEGKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLL 917

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + +
Sbjct: 918 GAEQSGFIADL--GYETYQKILAEAVHELR 945


>gi|118589910|ref|ZP_01547314.1| Mfd, transcription-repair coupling factor [Stappia aggregata IAM
           12614]
 gi|118437407|gb|EAV44044.1| Mfd, transcription-repair coupling factor [Stappia aggregata IAM
           12614]
          Length = 1161

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 142/451 (31%), Positives = 229/451 (50%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPT 274
           D       + R A  +    +IA  L++   ++ +     VE       +     P+  T
Sbjct: 558 DKLGGGAWQARKAKLKKRILEIADGLIKTAAQRALKTAPVVETPEGVYDEFATRFPYEET 617

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q +AI  + +D+S    M R++ GDVG GKT VAL A   A  +G Q  ++ P  +LA
Sbjct: 618 DDQLTAIDAVFEDLSSGRPMDRLVCGDVGFGKTEVALRAAFIAAMSGRQVAVVVPTTLLA 677

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH++   +      I V   +  +P        + IA G   I++GTHAL   SI++  
Sbjct: 678 RQHFKTFSERFHGLPINVAHASRLVPTKQLNLTKKGIADGSVDIVVGTHALLGKSIEFRD 737

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S I   P  
Sbjct: 738 LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLIATPPVD 797

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  ++T + P + +  V E L      G +++++CP++ +          ER   L    
Sbjct: 798 RLAVRTFVSPFDPL-VVREALLREHYRGGQSFYVCPRLADIA--------ERLEFLENQV 848

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +A+ HG+M   + E VM++F  G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 849 PELKVAVAHGQMPPGELEDVMNAFYEGKYNVLLSTTIVESGLDIPTANTLIVHRADMFGL 908

Query: 574 AQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           AQL+QLRGRVGR +  +  +     +  L+  +  RL VL++ E    GF +A  DL  R
Sbjct: 909 AQLYQLRGRVGRSKTRAYALFTVPANKTLTATAERRLKVLQSLETLGAGFQLASHDLDIR 968

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG         EL+  +LE A
Sbjct: 969 GAGNLLGEEQSGHI--KEVGFELYQQMLEEA 997


>gi|188575614|ref|YP_001912543.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
            PXO99A]
 gi|188520066|gb|ACD58011.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
            PXO99A]
          Length = 1154

 Score =  336 bits (861), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 153/495 (30%), Positives = 244/495 (49%), Gaps = 22/495 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +WT   R+       +A ++  +    + +   G
Sbjct: 531  VAQLHLISRYSGASAETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQA--RRRARAG 588

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ 
Sbjct: 589  LALQVDRAMYEPFAAGFPFEETADQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVR 648

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  + VE+++        +  LE++A
Sbjct: 649  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVA 708

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +IIGTH L Q  +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 709  SGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIP 768

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I   +    + E  +  LS G + Y++   +
Sbjct: 769  RTLNMAMAGLRDLSIIATPPPNRLAVQTFITAWDNT-LLREAFQRELSRGGQLYFLHNDV 827

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +    + L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 828  ESIV-----RMQRDLSELVPE--ARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIE 880

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 881  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRAMTSDAEKRLEA 940

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  +   
Sbjct: 941  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIRQ-- 996

Query: 668  TQDPDLTSVRGQSIR 682
             + PDL +  G+ +R
Sbjct: 997  GKLPDLDA--GEEVR 1009


>gi|189463579|ref|ZP_03012364.1| hypothetical protein BACCOP_04303 [Bacteroides coprocola DSM 17136]
 gi|189429682|gb|EDU98666.1| hypothetical protein BACCOP_04303 [Bacteroides coprocola DSM 17136]
          Length = 1123

 Score =  336 bits (861), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 221/450 (49%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q K+E G   + +  +  ++  +  +  T  Q  
Sbjct: 510 WEKIKERTKTKIKDIARDLIKLY--SQRKQEKGFKYSPDSFMQHELEASFIYEDTPDQLK 567

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +++  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+
Sbjct: 568 ATQEVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHYQ 627

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K  +     VE ++         + L+ +  G  +I+IGTH +   S++++ L L+I
Sbjct: 628 TFCKRLEGMPCKVEYLSRARTAKDTSRILKELEAGTVNILIGTHKIIGKSVKFHDLGLLI 687

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 688 IDEEQKFGVSVKEKLRQIKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 747

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + E +   +S   + +++  +I+   E            +       + 
Sbjct: 748 TEVHTFNE-EIITEAINFEMSRNGQVFFVNNRIQNLMELKAMI-------VRNIPDCRVC 799

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 800 IGHGQMQPEELEKIIFGFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 859

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 860 RGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 919

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 920 GAEQSGFIADL--GYETYQKILSEAVTELK 947


>gi|294664095|ref|ZP_06729492.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
 gi|292606135|gb|EFF49389.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
          Length = 1154

 Score =  336 bits (861), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 153/495 (30%), Positives = 244/495 (49%), Gaps = 22/495 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +WT   R+       +A ++  +    + +   G
Sbjct: 531  VAQLHLISRYSGASAETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQA--RRRARAG 588

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ 
Sbjct: 589  LALQVDRAMYEPFAAGFPFEETGDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVR 648

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  + VE+++        +  LE++A
Sbjct: 649  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVA 708

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +IIGTH L Q  +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 709  SGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIP 768

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I   +    + E  +  LS G + Y++   +
Sbjct: 769  RTLNMAMAGLRDLSVIATPPPNRLAVQTFITAWDNT-LLREAFQRELSRGGQLYFLHNDV 827

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +    + L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 828  ESIV-----RMQRDLSELVPE--ARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIE 880

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 881  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEA 940

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  +   
Sbjct: 941  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIRQ-- 996

Query: 668  TQDPDLTSVRGQSIR 682
             + PDL +  G+ +R
Sbjct: 997  GKLPDLDA--GEEVR 1009


>gi|21232129|ref|NP_638046.1| transcription-repair coupling factor [Xanthomonas campestris pv.
            campestris str. ATCC 33913]
 gi|21113878|gb|AAM41970.1| transcription-repair coupling factor [Xanthomonas campestris pv.
            campestris str. ATCC 33913]
          Length = 1155

 Score =  336 bits (861), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 152/501 (30%), Positives = 245/501 (48%), Gaps = 21/501 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +WT   R+       +A ++  +    + +   G
Sbjct: 532  VAQLHLISRYSGASADTAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQA--RRRARAG 589

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ 
Sbjct: 590  LALQVDRAMYEPFAAGFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVR 649

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  + VE+++        +  LE++A
Sbjct: 650  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVA 709

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +IIGTH L Q  +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 710  SGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIP 769

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I   +    + E  +  LS G + Y++   +
Sbjct: 770  RTLNMAMAGLRDLSIIATPPPNRLAVQTFITAWDNT-LLREAFQRELSRGGQLYFLHNDV 828

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +    + L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 829  ESIV-----RMQRDLSELVPE--ARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIE 881

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 882  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEA 941

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  +   
Sbjct: 942  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIRQ-- 997

Query: 668  TQDPDLTS-VRGQSIRILLYL 687
             + PDL +    +   + L++
Sbjct: 998  GKLPDLDAGEEVRGAEVELHV 1018


>gi|311063752|ref|YP_003970477.1| ATP-dependent DNA helicase RecG [Bifidobacterium bifidum PRL2010]
 gi|310866071|gb|ADP35440.1| RecG ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010]
          Length = 894

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 211/879 (24%), Positives = 337/879 (38%), Gaps = 217/879 (24%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P    D      + E      +  +  +       +  R
Sbjct: 17  RRVGALKSLGVVTVGDALTYYPFRVADPVPLRALREARIGERMAFSASVRSMRVVPMNVR 76

Query: 88  RPYK--ILLNDGTGEIT---------LLFFY---RKTEMLKNVFFEGRKITVTGKIKKLK 133
           R Y+   +++DG   ++         L+FF    +  + L      G  + + G+  +  
Sbjct: 77  RGYRLEAVVDDGDFAVSRHIAGAAARLVFFSYKKQYVDWLSMRLRSGAIVVIAGEPSEFN 136

Query: 134 NRIIMVHPHYIF------------------------HNSQDVNFPLI---EAVYSLPTGL 166
            ++   HP  +                          ++ +     I     VY   + +
Sbjct: 137 GQLQFTHPEIMTVAPGSGPADGEYSGVVQMSALKYDADTVEAGLRRISRPRPVYHASSRI 196

Query: 167 SVDLFKKIIVEALSRLP------------------------------------------- 183
           S +   + IV+ +  L                                            
Sbjct: 197 SSEHIHESIVQCIELLAGTGQDLPGDAATEAPQTMKPMEDGGISGAGTAPADAESRSGNA 256

Query: 184 -------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
                   +P+ + + + +       AEAF  IH+P    DF+          Y+E    
Sbjct: 257 VAVGLARAIPDVLPESVRESNHLLHRAEAFLAIHDPLNTADFKRAIGTMR---YEEAFVS 313

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q ALL  R   +K+  +P      +  + + ++PF  T  Q   I DI  DM+++  M R
Sbjct: 314 QTALLQSRSNVRKDAALPCAGV-ALRDRFIESLPFPLTGGQREIIDDIGVDMAREYPMQR 372

Query: 297 ILQGDVGS----------------GKTLV-----------------ALIAMAAAVEAG-- 321
           +LQG+VGS                G   V                 A++     VE G  
Sbjct: 373 LLQGEVGSGKTVVAVAAMLQAAGSGHQAVLVAPTQVLAEQHHATISAMLCAIDGVETGDD 432

Query: 322 ----------------------------GQAVIMAPIGIL-AQQHYEFIKKYTQNTQIIV 352
                                       G+  +  P+    A++  +    +     + V
Sbjct: 433 PSRDALSPNDPADLIKAAESAADDGDAKGRTAVKHPVKHSGARRGKQDGAAHANTRHVPV 492

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG M  A RR+AL   A G   II+ THA F  + Q   L LV++DEQHRFGV+QR 
Sbjct: 493 ILLTGGMKLAARRRALALAASGDPCIIVATHAAFSKTFQAPNLALVVIDEQHRFGVEQRE 552

Query: 413 KLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---I 468
            L  +    PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T I+P +    +
Sbjct: 553 SLRTKNDVVPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTFIVPEDDGRMM 612

Query: 469 DEVIERLKVVLSEGKKAYWICPQI------------------------------------ 492
             +   ++  +  G++AY +CP+I                                    
Sbjct: 613 GSMFAHIRGRIDAGERAYVVCPRIDADDESDGDDDTSGASQIGVYDDSDAYRRESAAAAA 672

Query: 493 ---------EEKKESNFRSVVERFNSLHEHFTS-------SIAIIHGRMSDIDKESVMDS 536
                    E+   +  R  +     +    +S         A + GR  D  K+ VM  
Sbjct: 673 NTAASAPSQEDGDGAPSRPPLHSVAEIERRLSSLPQFRGVRFATLTGRDDDATKQQVMAD 732

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F +G   +L+ATTVIEVG+DV  AS I+I +A+ +GL+QLHQLRGRVGRG   S   L+ 
Sbjct: 733 FADGATPVLVATTVIEVGVDVPQASCIVIFDADRYGLSQLHQLRGRVGRGGTDSWAFLIS 792

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSL 655
                  +  RL V++ T DG  IA+ DL+ R  G++LG  QSG      + +      +
Sbjct: 793 RAEDGGPAQQRLQVIQGTLDGAQIAQADLEFRGAGDVLGDAQSGGKSGLKLLRVVKDVKI 852

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           +  AR+ A  +L  DPDL+    +    +L   + NE F
Sbjct: 853 IADARERAGRLLADDPDLSG-EVELAGAVLDFTRGNETF 890


>gi|58581095|ref|YP_200111.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
            KACC10331]
 gi|58425689|gb|AAW74726.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
            KACC10331]
          Length = 1154

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 153/495 (30%), Positives = 244/495 (49%), Gaps = 22/495 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +WT   R+       +A ++  +    + +   G
Sbjct: 531  VAQLHLISRYSGASAETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQA--RRRARAG 588

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ 
Sbjct: 589  LALQVDRAMYEPFAAGFPFEETADQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVR 648

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  + VE+++        +  LE++A
Sbjct: 649  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVA 708

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +IIGTH L Q  +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 709  SGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIP 768

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I   +    + E  +  LS G + Y++   +
Sbjct: 769  RTLNMAMAGLRDLSIIATPPPNRLAVQTFITAWDNT-LLREAFQRELSRGGQLYFLHNDV 827

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +    + L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 828  ESIV-----RMQRDLSELVPE--ARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIE 880

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 881  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRAMTSDAEKRLEA 940

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  +   
Sbjct: 941  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIRQ-- 996

Query: 668  TQDPDLTSVRGQSIR 682
             + PDL +  G+ +R
Sbjct: 997  GKLPDLDA--GEEVR 1009


>gi|294625045|ref|ZP_06703694.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
 gi|292600675|gb|EFF44763.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
          Length = 1154

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 153/495 (30%), Positives = 244/495 (49%), Gaps = 22/495 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +WT   R+       +A ++  +    + +   G
Sbjct: 531  VAQLHLISRYSGASAETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQA--RRRARAG 588

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ 
Sbjct: 589  LALQVDRAMYEPFAAGFPFEETGDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVR 648

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  + VE+++        +  LE++A
Sbjct: 649  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVA 708

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +IIGTH L Q  +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 709  SGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIP 768

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I   +    + E  +  LS G + Y++   +
Sbjct: 769  RTLNMAMAGLRDLSIIATPPPNRLAVQTFITAWDNT-LLREAFQRELSRGGQLYFLHNDV 827

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +    + L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 828  ESIV-----RMQRDLSELVPE--ARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIE 880

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 881  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEA 940

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  +   
Sbjct: 941  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIRQ-- 996

Query: 668  TQDPDLTSVRGQSIR 682
             + PDL +  G+ +R
Sbjct: 997  GKLPDLDA--GEEVR 1009


>gi|84623030|ref|YP_450402.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
            MAFF 311018]
 gi|84366970|dbj|BAE68128.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
            MAFF 311018]
          Length = 1154

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 153/495 (30%), Positives = 244/495 (49%), Gaps = 22/495 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +WT   R+       +A ++  +    + +   G
Sbjct: 531  VAQLHLISRYSGASAETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQA--RRRARAG 588

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ 
Sbjct: 589  LALQVDRAMYEPFAAGFPFEETADQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVR 648

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  + VE+++        +  LE++A
Sbjct: 649  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVA 708

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +IIGTH L Q  +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 709  SGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIP 768

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I   +    + E  +  LS G + Y++   +
Sbjct: 769  RTLNMAMAGLRDLSIIATPPPNRLAVQTFITAWDNT-LLREAFQRELSRGGQLYFLHNDV 827

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +    + L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 828  ESIV-----RMQRDLSELVPE--ARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIE 880

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 881  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRAMTSDAEKRLEA 940

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  +   
Sbjct: 941  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIRQ-- 996

Query: 668  TQDPDLTSVRGQSIR 682
             + PDL +  G+ +R
Sbjct: 997  GKLPDLDA--GEEVR 1009


>gi|291517134|emb|CBK70750.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            longum F8]
          Length = 1194

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 231/452 (51%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRA--KGFAFSPDTPWQKELEDAFPYQETADQL 644

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQHY
Sbjct: 645  TTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHY 704

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++         + +E +  G   ++IGTH L    I++  L LV
Sbjct: 705  ETFSERFEGFPVNVAAMSRFQTTKEINETIEGLETGTVDVVIGTHKLLNPKIKFKDLGLV 764

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 765  IIDEEQRFGVGHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 824

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  ++++       S+ ++ ++L     + +
Sbjct: 825  LTYVGAYED-AQVTAAVRRELLRGGQVFYVHNRVQDIS-----SIADKIHTLVPE--AHV 876

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 877  GIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 936

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 937  LRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 996

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 997  LGDEQSGHIE--GVGFDLYVRMVSEAVEKYKE 1026


>gi|23465592|ref|NP_696195.1| transcription-repair coupling factor [Bifidobacterium longum NCC2705]
 gi|23326260|gb|AAN24831.1| transcription-repair coupling factor [Bifidobacterium longum NCC2705]
          Length = 1194

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 233/452 (51%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q  +      + +    +++    P+  T  Q 
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRARG--FAFSPDTPWQKELEDAFPYQETADQL 644

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQHY
Sbjct: 645  TTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHY 704

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  ++  +   + V  ++         + +E +  G   ++IGTH L    I++  L LV
Sbjct: 705  ETFRERFEGFPVNVAAMSRFQTTKEINETIEGLETGTVDVVIGTHKLLNPKIKFKDLGLV 764

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 765  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 824

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  ++++       S+ ++ ++L     + +
Sbjct: 825  LTYVGAYED-AQVTAAVRRELLRGGQVFYVHNRVQDIS-----SIADKIHTLVPE--AHV 876

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 877  GIAHGKMGEKQLDQIIRDFWHRGIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 936

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 937  LRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 996

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 997  LGDEQSGHIE--GVGFDLYVRMVSEAVEKYKE 1026


>gi|302343056|ref|YP_003807585.1| transcription-repair coupling factor [Desulfarculus baarsii DSM
           2075]
 gi|301639669|gb|ADK84991.1| transcription-repair coupling factor [Desulfarculus baarsii DSM
           2075]
          Length = 1147

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 146/481 (30%), Positives = 233/481 (48%), Gaps = 27/481 (5%)

Query: 188 WIEKD---LLQKKSFPSIAE-AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
           ++  D   L+ K   P  A  A + +          W           E +A  +  L  
Sbjct: 529 YLPADRMALISKYRGPDGAAPALDRLG------GKAWAKAKGRVKKAVETIAHDLVELYA 582

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            +Q     G          ++     P+  T  Q  AI+D++ DM     M R++ GDVG
Sbjct: 583 ARQA--SKGFAFTPPDGAYREFEAGFPYEETPDQAQAIEDVIADMITDKPMDRLVCGDVG 640

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
            GKT VAL A   A   G Q   +AP  +L +QH + + +  ++  ++VE ++     A 
Sbjct: 641 YGKTEVALRAAFLAAMQGKQVAFLAPTTVLTEQHCQTLTQRLKDQPLVVESLSRFKTPAQ 700

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++  LER+  G+  I++GTH + Q    +  L LVIVDE+ RFGV+ + +L +      V
Sbjct: 701 QKDILERLRQGKVDILVGTHRIIQKDAVFKDLGLVIVDEEQRFGVKDKERLKKMRRLVDV 760

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           + +TATPIPRTL ++  G  D+S I   P  R+ IKT +   +    V E +   L  G 
Sbjct: 761 ITLTATPIPRTLQMSLSGVRDLSVINTPPEDRQSIKTYLSAFSPGG-VSEAVARELERGG 819

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           + +++  ++++  +            L     + +A+ HG+M++ + E VM  F +    
Sbjct: 820 QVFFVHNRVQDLDKMAG-----LVRRLAP--QARVAMAHGQMAEKELEKVMLQFVHKEVD 872

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LS 601
           +L+ TT+IE G+D+  A+ III NA+ FGL+Q++QLRGRVGR  + +   L       LS
Sbjct: 873 VLVCTTIIESGLDIPSANTIIINNADKFGLSQIYQLRGRVGRSAQRAYAYLFIKSEAALS 932

Query: 602 KNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            ++  RL  L +      GF IA  D++ R  G +LG  QSGM        EL+  +LE 
Sbjct: 933 SDARKRLKALMDFTQLGSGFAIAMHDMQIRGAGNMLGEAQSGMA--AEVGYELYLGMLED 990

Query: 659 A 659
           A
Sbjct: 991 A 991


>gi|228470004|ref|ZP_04054920.1| transcription-repair coupling factor [Porphyromonas uenonis 60-3]
 gi|228308385|gb|EEK17223.1| transcription-repair coupling factor [Porphyromonas uenonis 60-3]
          Length = 1114

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 135/478 (28%), Positives = 233/478 (48%), Gaps = 18/478 (3%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P+ +K         +  A  ++ +    L+ +    K++ G   + +  +  ++  +  +
Sbjct: 489 PQLSKLGTGAWTKLKERAKTKIKSIARDLIALYAARKEQPGFAFSPDSYLQHEMEASFAY 548

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q  AI+ I  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  
Sbjct: 549 EETPDQLKAIEQIKADMESNRPMDRLVCGDVGFGKTEVAIRAAFKAVADSKQVAVLVPTT 608

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA QHY+   +  +     +E ++        +  L  +A GQ  I+IGTH L    + 
Sbjct: 609 ILAYQHYQTFSQRLEGLPCRIEYLSRAKSDKQTKAILADLAEGQVDILIGTHRLLSKGVA 668

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+I+DE+ +FGV+ + +L +       L ++ATPIPRTL  + +G  D+S I   
Sbjct: 669 FKSLGLLIIDEEQKFGVKAKEQLRKLQVNVDTLTLSATPIPRTLQFSLMGARDLSNINTP 728

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R+P+ T +I  ++ + + + +   L+   + +++  +IE                + 
Sbjct: 729 PRNRQPVTTRLIRWSQ-ETIADAIGYELARHGQVFFVHNRIESIHG--------VAGQIQ 779

Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
           E      IAI HGR++  + E ++  F      LL+ATT+IE GID+   + III +A  
Sbjct: 780 ECVPGIRIAIAHGRLTPSETERILLDFAERKYDLLLATTIIENGIDMPSVNTIIINSAHR 839

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDL 625
           +GL+ LHQLRGRVGRG + + C L+  P   L++ +  R+  +++  D   G  IA +DL
Sbjct: 840 YGLSDLHQLRGRVGRGSQRAYCYLITPPLGTLTEAAARRVKAIESLSDLGSGMRIALQDL 899

Query: 626 KQRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
             R  G ILG +QSG      F   +    +++ E+ ++D   +     +  +  G +
Sbjct: 900 DIRGAGNILGTEQSGFIADLGFETYRKVFEEAVREVKQEDFAALFAAQTEQQAELGNA 957


>gi|227546191|ref|ZP_03976240.1| transcription-repair coupling factor helicase [Bifidobacterium longum
            subsp. infantis ATCC 55813]
 gi|227213172|gb|EEI81044.1| transcription-repair coupling factor helicase [Bifidobacterium longum
            subsp. infantis ATCC 55813]
          Length = 1194

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 231/452 (51%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRA--KGFAFSPDTPWQKELEDAFPYQETADQL 644

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQHY
Sbjct: 645  TTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHY 704

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++         + +E +  G   ++IGTH L    I++  L LV
Sbjct: 705  ETFSERFEGFPVNVAAMSRFQTTKEINETIEGLETGTVDVVIGTHKLLNPKIKFKDLGLV 764

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV  +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 765  IIDEEQRFGVGHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 824

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  ++++       S+ ++ ++L     + +
Sbjct: 825  LTYVGAYED-AQVTAAVRRELLRGGQVFYVHNRVQDIS-----SIADKIHTLVPE--AHV 876

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 877  GIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 936

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 937  LRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 996

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 997  LGDEQSGHIE--GVGFDLYVRMVSEAVEKYKE 1026


>gi|198275717|ref|ZP_03208248.1| hypothetical protein BACPLE_01892 [Bacteroides plebeius DSM 17135]
 gi|198271346|gb|EDY95616.1| hypothetical protein BACPLE_01892 [Bacteroides plebeius DSM 17135]
          Length = 1122

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 143/469 (30%), Positives = 231/469 (49%), Gaps = 17/469 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q K+E G   + +  +  ++  +  +  T  Q  
Sbjct: 507 WEKIKERTKTKIKDIARDLIKLY--SQRKQEKGFKYSPDSFLQHELEASFLYEDTPDQLK 564

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +++  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 565 ATQEVKADMESDKPMDRLVCGDVGFGKTEVAIRAAFKAVTDNKQVAVLVPTTVLAYQHFQ 624

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  ++    VE ++         + L+ +A G+ +I+IGTH +   S+++  L L+I
Sbjct: 625 TFKKRLEDMPCKVEYLSRARTAKDTSRILKELADGKINILIGTHKIIGKSVKFKDLGLLI 684

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L +TATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 685 IDEEQKFGVSVKEKLRQLKVNVDTLTLTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 744

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + E +   +S   + +++  +I+   E            L       + 
Sbjct: 745 TEVHTFNE-EIISEAINFEMSRNGQVFFVNNRIQNLVELKAMI-------LRNIPDCRVC 796

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 797 IGHGQMQPEELEKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 856

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGRG + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 857 RGRVGRGNKKAFCYLLAPPLSSLTPEARRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 916

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           G +QSG    L    E +  +L  A  + K+    D     ++    +I
Sbjct: 917 GAEQSGFIADL--GYETYQKILNEAVTELKNEEFADLYAEEIKAGEEKI 963


>gi|296283911|ref|ZP_06861909.1| transcription-repair coupling factor [Citromicrobium bathyomarinum
           JL354]
          Length = 1163

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 156/522 (29%), Positives = 247/522 (47%), Gaps = 31/522 (5%)

Query: 152 NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHN 211
                  +  +  G S      +  +   +L +  E +  ++L +    S  +A  +   
Sbjct: 496 GIGKYLGLEPVTVGKSKHDCVMLQYKGGDKLYIPVENL--EVLSRYG--SSEDAVML--- 548

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNI 269
                D       ++R A       +IA  LMR   Q   +    +  +     + +   
Sbjct: 549 -----DRLGGEAWQKRRAQLRERIREIASELMRTAAQRALKKAPVLEADHASYNQFVDRF 603

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P+  T+ QE AI D+L D+     M R++ GDVG GKT VAL A   A   G Q  ++AP
Sbjct: 604 PWEETEDQERAIADVLGDLESGKPMDRLVCGDVGFGKTEVALRAAFVAAMGGQQVAVVAP 663

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA+QH++   +      + V  ++  +      +  + +A G   I++GTHA+   S
Sbjct: 664 TTLLARQHFQHFSERFAGFPLKVGRLSRLVSAKESSETRDALADGTMDIVVGTHAILSKS 723

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            ++  L LVIVDE+ RFGV  + KL Q     H+L +TATPIPRTL +   G  ++S I 
Sbjct: 724 TKFKDLGLVIVDEEQRFGVTHKEKLKQLRADVHMLTLTATPIPRTLQMAMTGLRELSTIQ 783

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R  ++T +I  + +  + E L      G +++ + P+I +        +    + 
Sbjct: 784 TPPVDRLAVRTYVIEWDDM-VIREALLREHHRGGQSFIVVPRISD--------MDPLLDW 834

Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           LHEH     +   HG+MS  + E  M +F      +L++TT++E G+D+  A+ III  A
Sbjct: 835 LHEHVPEVKVVPAHGQMSASEVEDRMSAFYEKKYDVLLSTTIVESGLDISSANTIIIHRA 894

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEE 623
           + FGLAQL+QLRGRVGR +  +   L       LS+ +  RL VL + +    GF +A  
Sbjct: 895 DRFGLAQLYQLRGRVGRAKLRAYAYLTTPADEALSEVAEKRLKVLSDLDSLGAGFQLASH 954

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           DL  R  G +LG +QSG         EL+ S+LE A   AK 
Sbjct: 955 DLDIRGAGNLLGDEQSGHI--REVGFELYQSMLEDAILAAKA 994


>gi|66767742|ref|YP_242504.1| transcription-repair coupling factor [Xanthomonas campestris pv.
            campestris str. 8004]
 gi|66573074|gb|AAY48484.1| transcription-repair coupling factor [Xanthomonas campestris pv.
            campestris str. 8004]
          Length = 1155

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 152/501 (30%), Positives = 245/501 (48%), Gaps = 21/501 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +WT   R+       +A ++  +    + +   G
Sbjct: 532  VAQLHLISRYSGASADTAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQA--RRRARAG 589

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ 
Sbjct: 590  LALQVDRAMYEPFAAGFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVR 649

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  + VE+++        +  LE++A
Sbjct: 650  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVA 709

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +IIGTH L Q  +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 710  SGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIP 769

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I   +    + E  +  LS G + Y++   +
Sbjct: 770  RTLNMAMAGLRDLSIIATPPPNRLAVQTFITAWDNT-LLREAFQRELSRGGQLYFLHNDV 828

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +    + L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 829  ESIV-----RMQRDLSELVPE--ARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIE 881

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 882  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEA 941

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  +   
Sbjct: 942  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIRQ-- 997

Query: 668  TQDPDLTS-VRGQSIRILLYL 687
             + PDL +    +   + L++
Sbjct: 998  GKLPDLDAGEEVRGAEVELHV 1018


>gi|29345662|ref|NP_809165.1| transcription-repair coupling factor [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253567649|ref|ZP_04845060.1| transcription-repair coupling factor [Bacteroides sp. 1_1_6]
 gi|29337554|gb|AAO75359.1| transcription-repair coupling factor [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841722|gb|EES69802.1| transcription-repair coupling factor [Bacteroides sp. 1_1_6]
          Length = 1127

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 225/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        A  + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 508 WEKLKDRTKAKIKDIARDLIKLY--SQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSK 565

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  ++  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 566 ATMEVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 625

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++  +     VE ++     A  +  L+ +  G+  I+IGTH +    +Q+  L L+I
Sbjct: 626 TFRERLKGLPCRVEYLSRARTAAQSKAVLKGLKEGEVSILIGTHRILGKDVQFKDLGLLI 685

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+  P  R PI+
Sbjct: 686 IDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQ 745

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + + +   +S   + +++  +I    E   + ++ER           +A
Sbjct: 746 TEVHTFNE-EVITDAINFEMSRNGQVFFVNNRIANLPE--LKVMIERH-----IPDCRVA 797

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 798 IGHGQMEPTQLEQIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 857

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+     RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 858 RGRVGRSNKKAFCYLLAPPLSSLTAEGKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLL 917

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + +
Sbjct: 918 GAEQSGFIADL--GYETYQKILAEAVHELR 945


>gi|332665410|ref|YP_004448198.1| transcription-repair coupling factor [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332334224|gb|AEE51325.1| transcription-repair coupling factor [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 1141

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 128/446 (28%), Positives = 215/446 (48%), Gaps = 16/446 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           + +  Q K   G     +  +  ++  +  +  T  Q  A  D   DM++   M R++ G
Sbjct: 549 IKLYAQRKASPGFAFAPDNYMQVELESSFIYEDTPDQLQATIDTKNDMTKPYPMDRLICG 608

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VA+ A   A+  G Q  ++ P  ILA QH +      ++    V+ +     
Sbjct: 609 DVGFGKTEVAIRAAFKAILDGKQVAVLVPTTILALQHAKTFGDRLKDFSATVDYVNRFRT 668

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++  ER+  G+  +IIGT AL    +++  L L+I+DE+ +FGV  + KL      
Sbjct: 669 AGEKKQIFERLREGKIDLIIGTQALLNQEVKFKDLGLLIIDEEQKFGVASKEKLRNFKVN 728

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              L +TATPIPRTL  + +   D+S I   P  R+PI T +   +  D + E +   ++
Sbjct: 729 VDTLTLTATPIPRTLQFSLMAARDLSIIRTPPPNRQPIHTEVRIFSE-DIIKEAIYYEVN 787

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G + +++  +++   E            L       +A  HG+M     E  +  F + 
Sbjct: 788 RGGQVFFVHNRVKNLAEVEM-----MIRRLCPDVE--VASAHGQMESDKLEKTLVDFIDK 840

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-- 598
              +L+ T +IE G+D+ +A+ ++I NA  FG++ LHQLRGRVGR  + + C L   P  
Sbjct: 841 QYDVLVCTNIIETGLDISNANTMLINNAHQFGMSDLHQLRGRVGRSNKKAYCYLFSPPMS 900

Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM---PKFLIAQPELH 652
            L+ ++  RL  L+   D   GF IA  DL  R  G +LG +QSG      +   Q  L 
Sbjct: 901 TLTSDARKRLRTLEEFSDLGSGFHIAMRDLDIRGAGNLLGAEQSGFIVDIGYETYQKILE 960

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRG 678
           ++++E+   D K +  ++ + T  + 
Sbjct: 961 EAIIELKETDFKDVFAEELEKTDRKY 986


>gi|114327500|ref|YP_744657.1| transcription-repair coupling factor [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315674|gb|ABI61734.1| transcription-repair coupling factor [Granulibacter bethesdensis
           CGDNIH1]
          Length = 1149

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 143/453 (31%), Positives = 230/453 (50%), Gaps = 17/453 (3%)

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
             W S   +       +AG++  +   ++ ++     +  +     +     PF+ T+ Q
Sbjct: 541 VSWQSRKAKMKQRIRDMAGELIRIAAERKVREAPM--LTPQEGAWDEFCARFPFAETEDQ 598

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI D+L+DM+    M R++ GDVG GKT +AL A   A   G Q  ++ P  +LA+QH
Sbjct: 599 ARAIADVLEDMASGRPMDRLICGDVGFGKTEIALRAAFVAAMTGAQVAVVVPTTLLARQH 658

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y    K  +   + V  ++  +      +    +A G  +I++GTHAL   ++Q+  L L
Sbjct: 659 YRTFAKRFEGLPVTVAQLSRMVTAKEASQVRAGLADGSVNIVVGTHALLAKTVQFADLGL 718

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VIVDE+  FGV  + KL       HVL +TATPIPRTL L+  G  ++S I   P  R  
Sbjct: 719 VIVDEEQHFGVSHKEKLKALRADVHVLTLTATPIPRTLQLSLSGVREMSIIATPPVDRLA 778

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           ++T I+P + +  V E ++     G + + +CP++E+        + ER   +     + 
Sbjct: 779 VRTFIMPFDSV-VVREAIQRERFRGGQVFCVCPRLEDLG-----RMAERLAEIVPE--AK 830

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +   HG+++  + E VM  F +G   +L+AT ++E G+D+   + III  A+ FGL QL+
Sbjct: 831 LITAHGQLAPTELERVMTEFGDGKHDILLATNIVESGLDMPAVNTIIIHRADMFGLGQLY 890

Query: 578 QLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGRVGRG++     L +     LS  +  RL V++  +    GF +A  DL  R  G 
Sbjct: 891 QLRGRVGRGKQRGYAYLTWPQAHRLSVAAEKRLEVMQTLDTLGAGFTLASHDLDIRGAGN 950

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           +LG +QSG         EL+  +LE A  D +H
Sbjct: 951 LLGDEQSGHI--REVGIELYQQMLEDAVADMRH 981


>gi|255691931|ref|ZP_05415606.1| transcription-repair coupling factor [Bacteroides finegoldii DSM
           17565]
 gi|260622336|gb|EEX45207.1| transcription-repair coupling factor [Bacteroides finegoldii DSM
           17565]
          Length = 1123

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 143/465 (30%), Positives = 231/465 (49%), Gaps = 17/465 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 508 WEKLKERTKSKIKDIARDLIKLY--SQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSK 565

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 566 ATIDVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 625

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +   +     VE ++     A  +  L+ +  G  +I+IGTH +    +Q+  L L+I
Sbjct: 626 TFRDRLKGLPCRVEYLSRARTAAQSKAVLKGLKEGDVNILIGTHRILGKDVQFKDLGLLI 685

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+  P  R PI+
Sbjct: 686 VDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQ 745

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + + +   +S   + +++  +I    E   ++++ER           +A
Sbjct: 746 TEVHTFNE-EVITDAINFEMSRNGQVFFVNNRIANLPE--LKAMIERH-----IPDCRVA 797

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 798 IGHGQMEPAQLEKIILDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 857

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+     RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 858 RGRVGRSNKKAFCYLLAPPLSSLTAEGKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLL 917

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
           G +QSG    L    E +  +L  A  + K+    D     ++G+
Sbjct: 918 GAEQSGFVADL--GYETYQKILSEAVHELKNDEFADLYAEEIKGE 960


>gi|166711350|ref|ZP_02242557.1| transcription-repair coupling factor [Xanthomonas oryzae pv.
            oryzicola BLS256]
          Length = 1154

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 153/495 (30%), Positives = 244/495 (49%), Gaps = 22/495 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +WT   R+       +A ++  +    + +   G
Sbjct: 531  VAQLHLISRYSGASAETAPLHSLGGEQWTKAKRKAADKVRDVAAELLEIQA--RRRARAG 588

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ 
Sbjct: 589  LALQVDRAMYEPFAAGFPFEETADQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVR 648

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  + VE+++        +  LE++A
Sbjct: 649  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVA 708

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +IIGTH L Q  +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 709  SGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIP 768

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I   +    + E  +  LS G + Y++   +
Sbjct: 769  RTLNMAMAGLRDLSIIATPPPNRLAVQTFITAWDNT-LLREAFQRELSRGGQLYFLHNDV 827

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +    + L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 828  ESIM-----RMQRDLSELVPE--ARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIE 880

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 881  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRAMTSDAEKRLEA 940

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  +   
Sbjct: 941  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIRQ-- 996

Query: 668  TQDPDLTSVRGQSIR 682
             + PDL +  G+ +R
Sbjct: 997  GKLPDLDA--GEEVR 1009


>gi|310779687|ref|YP_003968020.1| transcription-repair coupling factor [Ilyobacter polytropus DSM
           2926]
 gi|309749010|gb|ADO83672.1| transcription-repair coupling factor [Ilyobacter polytropus DSM
           2926]
          Length = 991

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 143/449 (31%), Positives = 231/449 (51%), Gaps = 17/449 (3%)

Query: 222 SPARERLAYDELLAG-QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
              RE+L  D +    ++  +  ++Q K       + +    ++     P++ TK Q  +
Sbjct: 416 RKRREKLKKDIMEFAKELIKIQAKRQSKNG--FAFSKDTVWQEEFEEGFPYNETKDQMRS 473

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I+++ QDM     M RI+ GDVG GKT VA+ A   A+  G Q V+MAP  +LA QHY+ 
Sbjct: 474 IEEVKQDMESHTVMDRIVCGDVGYGKTEVAMRAAFKALMDGKQVVVMAPTTVLASQHYQR 533

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
                +N  I + +++       +   ++++  G   ++IGTH L    + +  L LVI+
Sbjct: 534 FLDRFKNYPIEISLLSRLKSDKDQNDIIKKLKAGTVDLVIGTHRLLSKDVGFKNLGLVII 593

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+ +FGV+ + KL        +L +TATPIPRTL L  LG  DIS I   P  R P++T
Sbjct: 594 DEEQKFGVKAKEKLKHFRANVDMLTLTATPIPRTLNLAFLGIRDISIIQTPPPNRLPVET 653

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             I     + + E +   ++   + +++   ++     N +  +E   S+   +      
Sbjct: 654 NFIE-KTRENIKEAVMKEVAREGQIFYLFNSVK-----NMKRKLEEIESIIPKYV-KTTY 706

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG+M+  +    +  F++G   LL++TT+IE GID+ +A+ IIIEN +  GL+Q++QLR
Sbjct: 707 IHGQMTPKEIRDRIKDFEDGEVDLLLSTTIIENGIDIENANTIIIENIDKLGLSQVYQLR 766

Query: 581 GRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEILG 635
           GRVGRG   + C L+      ++K    R   L+N      GF ++ ED++ R  GEILG
Sbjct: 767 GRVGRGSRKAYCYLVVDKDKKMTKKGEQRKDSLENIGVFGAGFQLSMEDMRIRGAGEILG 826

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            KQ G  + L     L   LL+   K AK
Sbjct: 827 EKQHGALETLGYDLYL--KLLDEEVKKAK 853


>gi|298483734|ref|ZP_07001908.1| transcription-repair coupling factor [Bacteroides sp. D22]
 gi|298270151|gb|EFI11738.1| transcription-repair coupling factor [Bacteroides sp. D22]
          Length = 1141

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 226/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 525 WEKLKERTKSKIKDIARDLIKLY--SQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSK 582

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 583 ATIDVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 642

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++  +     VE ++     A  +  L+ +  G   I+IGTH +    +Q+  L L+I
Sbjct: 643 TFRERLKGLPCRVEYLSRARTAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLI 702

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+  P  R PI+
Sbjct: 703 VDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQ 762

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + + +   +S   + +++  +I    E   ++++ER           +A
Sbjct: 763 TEVHTFNE-EVITDAINFEMSRNGQVFFVNNRIANLPE--LKAMIERH-----IPDCRVA 814

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 815 IGHGQMEPTELEKIILDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 874

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+     RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 875 RGRVGRSNKKAFCYLLAPPLSSLTTEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLL 934

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 935 GAEQSGFVADL--GYETYQKILTEAVHELK 962


>gi|188990859|ref|YP_001902869.1| Transcription-repair coupling factor (TRCF). [Xanthomonas campestris
            pv. campestris str. B100]
 gi|167732619|emb|CAP50813.1| Transcription-repair coupling factor (TRCF) [Xanthomonas campestris
            pv. campestris]
          Length = 1156

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 152/501 (30%), Positives = 245/501 (48%), Gaps = 21/501 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +WT   R+       +A ++  +    + +   G
Sbjct: 533  VAQLHLISRYSGASADTAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQA--RRRARAG 590

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ 
Sbjct: 591  LALQVDRAMYEPFAAGFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVR 650

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  + VE+++        +  LE++A
Sbjct: 651  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVA 710

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +IIGTH L Q  +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 711  SGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIP 770

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T I   +    + E  +  LS G + Y++   +
Sbjct: 771  RTLNMAMAGLRDLSIIATPPPNRLAVQTFITAWDNT-LLREAFQRELSRGGQLYFLHNDV 829

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +    + L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 830  ESIV-----RMQRDLSELVPE--ARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIE 882

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 883  SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEA 942

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  +   
Sbjct: 943  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIRQ-- 998

Query: 668  TQDPDLTS-VRGQSIRILLYL 687
             + PDL +    +   + L++
Sbjct: 999  GKLPDLDAGEEVRGAEVELHV 1019


>gi|149204032|ref|ZP_01881000.1| transcription-repair coupling factor [Roseovarius sp. TM1035]
 gi|149142474|gb|EDM30519.1| transcription-repair coupling factor [Roseovarius sp. TM1035]
          Length = 1150

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 145/450 (32%), Positives = 232/450 (51%), Gaps = 17/450 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        I  E    +      P+  T
Sbjct: 538 DRLGGGAWQAKKARLKERIREMADRLIRVAAERALRSAPVIEPEHHAWEAFAARFPYQET 597

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI+D+L D+     M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA
Sbjct: 598 DDQLHAIEDVLNDLGSGAPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVIAPTTLLA 657

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY+      +   + V  ++  +      K  + +A G+A I++GTHAL    I++  
Sbjct: 658 RQHYQEFASRFRGFPVNVRPLSRFVSAGEAAKTRDAMARGEADIVVGTHALLAKGIRFKN 717

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+ RFGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I+  P  
Sbjct: 718 LGLLIIDEEQRFGVAHKERLKQLRSDVHVLTLTATPIPRTLQLSLSGVRDLSIISTPPVD 777

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  V E L      G +++++ P+I +  E       +         
Sbjct: 778 RLSIRTYVSEFDSV-TVREALLREHYRGGQSFYVVPRISDLPEIEDFLKTQV-------P 829

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             S  I HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +II  A+ FGL+
Sbjct: 830 EVSYVIAHGQMAAGELDERMNAFYDGKYDVLLATTIVESGLDIPTANTMIIHRADMFGLS 889

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
           QL+Q+RGRVGR +  +   L   P  PL+  +  RL VL + +    GF +A +DL  R 
Sbjct: 890 QLYQIRGRVGRSKTRAYAYLTTKPRVPLTPGAEKRLRVLGSLDTLGAGFTLASQDLDIRG 949

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            G +LG +QSG  +      EL+ S+LE A
Sbjct: 950 AGNLLGEEQSGQMRD--VGYELYQSMLEEA 977


>gi|77917709|ref|YP_355524.1| transcription-repair coupling factor [Pelobacter carbinolicus DSM
            2380]
 gi|77543792|gb|ABA87354.1| transcription-repair coupling factor [Pelobacter carbinolicus DSM
            2380]
          Length = 1161

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 147/456 (32%), Positives = 239/456 (52%), Gaps = 17/456 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     +  A  E LA ++  +  R++     G   +    + ++     P+  T  Q +
Sbjct: 573  WEKAKLKARAAVEELARELLQIYARRE--MHEGFHYSPPDAMFREFEAAFPYEETADQMA 630

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI D+L DM     M R++ GDVG GKT VA+ A   A   G Q  ++ P  ILA+QH +
Sbjct: 631  AINDVLTDMQTPRAMDRVICGDVGYGKTEVAIRAAYKAALDGKQVAVLVPTTILARQHGQ 690

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +  ++T + V  ++     A +++ L++ A G+  I+IGTH L Q  +++  L L+I
Sbjct: 691  TFAERLKDTPVTVASLSRLNSSAEQKQILQQAADGKIDILIGTHRLLQRDVRFKDLGLLI 750

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV  + +L +      +L +TATPIPRTL ++ LG  D+S I   P  R+ I+
Sbjct: 751  VDEEQRFGVTHKERLKKLRAEVDLLTLTATPIPRTLHMSLLGLRDLSVIDTPPVDRQVIR 810

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +  D + + +   L  G + +++  +++     N  ++ E   SL     +++A
Sbjct: 811  TYVSRFDD-DLIRQAILNELRRGGQVFFVHNRVQ-----NIGAMAEFIQSLVPE--ATVA 862

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M++   E+VM  F  G   +L+ +T+IE G+D+  A+ II+  A+ FGLAQL+QL
Sbjct: 863  VGHGQMTEKALEAVMMDFVEGKTNVLVCSTIIENGLDIPRANTIIVNRADCFGLAQLYQL 922

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   LL      L+  +  RL VL    +   GF IA  DL+ R  G++L
Sbjct: 923  RGRVGRSHLRAYAYLLIPGESTLTHEARERLRVLTELTELGAGFRIASHDLELRGAGDLL 982

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
            G KQSG    +    E++  LLE    + K    +D
Sbjct: 983  GPKQSGQIAAI--GFEMYAELLEDTIAELKGQQRED 1016


>gi|16126087|ref|NP_420651.1| transcription-repair coupling factor [Caulobacter crescentus CB15]
 gi|221234857|ref|YP_002517293.1| transcription-repair coupling factor [Caulobacter crescentus
           NA1000]
 gi|13423283|gb|AAK23819.1| transcription-repair coupling factor [Caulobacter crescentus CB15]
 gi|220964029|gb|ACL95385.1| transcription-repair coupling factor [Caulobacter crescentus
           NA1000]
          Length = 1155

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 229/450 (50%), Gaps = 15/450 (3%)

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
               R+  A + L      L+ +    + +     +    +  +     P+  T  Q SA
Sbjct: 555 AWQGRKAKAKERLRVMAEGLIQIAAARQLKTVEETDPPSGVFDEFCARFPYEETDDQLSA 614

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I D+L+D+S    M R++ GDVG GKT VAL A      +G Q  I+ P  +LA+QHY+ 
Sbjct: 615 IHDVLEDLSSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVCPTTLLARQHYKT 674

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            K   Q   + V  ++  +      +  E +A+GQ  I++GTHA+    + +  L LVIV
Sbjct: 675 FKDRFQGWPVKVTRLSRLVTGKEAAETREGLANGQFEIVVGTHAILSKQVSFKDLGLVIV 734

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+  FGV+ + KL +     H+L +TATPIPRTL +   G  ++S I   P  R  ++T
Sbjct: 735 DEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIREMSIIATPPVDRLAVRT 794

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            I P + +  + E L      G ++Y++ P+I++ ++       +              +
Sbjct: 795 YISPFDPV-TLREALLREKYRGGQSYYVVPRIKDLEDIEKFLRTQV-------PEVKFVV 846

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG+M+    E VM +F  G   +L+ATT++E G+D+  A+ +I+  A+ FGLAQL+Q+R
Sbjct: 847 GHGQMAATQLEDVMTAFYEGQYDVLLATTIVESGLDIPSANTLIVHRADMFGLAQLYQIR 906

Query: 581 GRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILG 635
           GRVGR +  +   L       L+ ++  RL VL++ +    GF +A  DL QR  G +LG
Sbjct: 907 GRVGRSKARAYAYLTTPVEKSLTPSAEKRLQVLQSLDSLGAGFQLASHDLDQRGGGNLLG 966

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            +QSG  K +    EL+  +LE A  + + 
Sbjct: 967 DEQSGHIKEI--GVELYQQMLEDAVAELRQ 994


>gi|260890929|ref|ZP_05902192.1| transcription-repair coupling factor [Leptotrichia hofstadii F0254]
 gi|260859482|gb|EEX73982.1| transcription-repair coupling factor [Leptotrichia hofstadii F0254]
          Length = 1069

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 149/482 (30%), Positives = 242/482 (50%), Gaps = 22/482 (4%)

Query: 225 RERLAYDELLA---GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
           R+R   +E +     ++  +  R+Q +         +    ++   N PF  T+ Q +AI
Sbjct: 482 RKRKKLEEDIQKFAAELIKIQARRQSQNG--FVYQKDTVWQEEFEANFPFEETEDQRNAI 539

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            D+ +DM     M RI+ GDVG GKT VA+ A   A++ G Q V++AP  +LA+QH+E  
Sbjct: 540 NDVKKDMESPQIMDRIVCGDVGYGKTEVAMRAAFKAIDNGKQVVMVAPTTVLAEQHFERF 599

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
           K+  +N  I +E ++  + ++  +  L+ +  G   ++IGTH L  D +Q+  L L+I+D
Sbjct: 600 KRRFENYPITIENLSR-LTKSKSKDILKNLKSGIIDLVIGTHRLLSDDVQFKNLGLLIID 658

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+ +FGV+ + KL  +     VL +TATPIPRTL L  LG  +IS I   P  R PI T 
Sbjct: 659 EEQKFGVKAKEKLKSQREKLDVLTLTATPIPRTLNLAMLGIREISIIDTPPTNRLPIITE 718

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIA 519
           I+  +  + +   +   LS   + ++I   +        +++ E+   L E       I 
Sbjct: 719 ILDWDE-ETIKMAILRELSRDGQVFYIYNDV--------KNMKEKLKELKEMLPDFVKIE 769

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I+G++   + +  +  F+NG   +LIA+T+IE GIDV +A+ I+IEN    GL+Q++QL
Sbjct: 770 FINGQLPPKEIKDKLLRFENGQFDILIASTIIENGIDVGNANTILIENFTGLGLSQVYQL 829

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE----DGFLIAEEDLKQRKEGEILG 635
           +GRVGR      C LL    ++K    +   +   E     GF I+ EDLK R  GEILG
Sbjct: 830 KGRVGRSNRQGYCYLLKTRNITKQGRQKEESMLKVEGIKSGGFQISMEDLKIRGAGEILG 889

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
            KQ G  +       +   L E  RK     + +  ++  +  +   I     + +E   
Sbjct: 890 DKQHGTIETFGYDLYI-KMLNEEIRKQKGEFVEKIENVEIILNERGFIPETYIEKDERLN 948

Query: 696 FI 697
             
Sbjct: 949 IY 950


>gi|295130108|ref|YP_003580771.1| transcription-repair coupling factor [Propionibacterium acnes SK137]
 gi|291376182|gb|ADE00037.1| transcription-repair coupling factor [Propionibacterium acnes SK137]
          Length = 1222

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 135/489 (27%), Positives = 229/489 (46%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 613  DWRKRKARARKAVREIAAELIKLYAARQA--TKGHAFGPDTAWQRELEGAFAYVETPDQL 670

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +   D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 671  TTFADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 730

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 731  QTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEVEFKDLGLV 790

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 791  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 850

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +         +   L     + I
Sbjct: 851  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIE-----KTAAKLRELVPE--ARI 902

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 903  VTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQ 962

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 963  LRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNL 1022

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 1023 LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETE 1080

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1081 RLRLEMYKR 1089


>gi|159903468|ref|YP_001550812.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9211]
 gi|159888644|gb|ABX08858.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
            MIT 9211]
          Length = 1169

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 129/451 (28%), Positives = 228/451 (50%), Gaps = 19/451 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W +   +       +A  +  L    +  K  G     +     ++     + PT  Q +
Sbjct: 569  WLNAKEKARKSINKVAIDLIRLYA--ERNKTEGYSFPPDAPWQSELEDAFQYEPTHDQLT 626

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AIKD+  DM +   M R++ GDVG GKT VA+ A+  A+ +G QA ++AP  IL+QQH+ 
Sbjct: 627  AIKDVKNDMEKPKPMDRLVCGDVGYGKTEVAIRALFKAIISGKQAALLAPTTILSQQHWR 686

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +        I + ++        +   +E +  G   +++GTH +  + + +  L L++
Sbjct: 687  TLSDRFAPYPIKIALLNRFKTSREKNAIVEELKSGTIDLVVGTHLILSNKVCFKDLGLLV 746

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV+Q+ ++ Q      VL +TATPIPRTL ++  G  ++S IT  P  R+ IK
Sbjct: 747  VDEEQRFGVKQKERIKQFKKNIDVLTLTATPIPRTLYMSLSGVREMSLITTPPPLRRAIK 806

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T +IP    + +   +   +  G + +++ P+IE         + +    L        I
Sbjct: 807  THLIPYEE-EAIRSAICQEIDRGGQIFYVVPRIE--------GITDIATKLSNMIPKIRI 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M + + ES M +F +    L++ TT++E G+D+   + I+IE+A+ FGL+QL+Q
Sbjct: 858  LIAHGQMDEGELESSMIAFNDWEADLMLCTTIVESGLDIPRVNTILIEDAQQFGLSQLYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPPLSKN--SYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LLY    + N  +  RL  ++       G+ ++  D++ R  G +
Sbjct: 918  LRGRVGRSGVQAHAWLLYPSNTTINDKAKQRLQAIQEFSQLGSGYQLSMRDMEIRGVGNL 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            +G++QSG  + +     ++  +L+    D +
Sbjct: 978  IGLQQSGQMEAIGFD--MYMEMLQECISDLE 1006


>gi|294808313|ref|ZP_06767070.1| transcription-repair coupling factor [Bacteroides xylanisolvens SD
           CC 1b]
 gi|294444475|gb|EFG13185.1| transcription-repair coupling factor [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 1161

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 226/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 545 WEKLKERTKSKIKDIARDLIKLY--SQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSK 602

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 603 ATIDVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 662

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++  +     VE ++     A  +  L+ +  G   I+IGTH +    +Q+  L L+I
Sbjct: 663 TFRERLKGLPCRVEYLSRARTAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLI 722

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+  P  R PI+
Sbjct: 723 VDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQ 782

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + + +   +S   + +++  +I    E   ++++ER           +A
Sbjct: 783 TEVHTFNE-EVITDAINFEMSRNGQVFFVNNRIANLPE--LKAMIERH-----IPDCRVA 834

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 835 IGHGQMEPTELEKIILDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 894

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+     RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 895 RGRVGRSNKKAFCYLLAPPLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLL 954

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 955 GAEQSGFVADL--GYETYQKILTEAVHELK 982


>gi|313203296|ref|YP_004041953.1| transcriptioN-repair coupling factor [Paludibacter propionicigenes
           WB4]
 gi|312442612|gb|ADQ78968.1| transcription-repair coupling factor [Paludibacter propionicigenes
           WB4]
          Length = 1113

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 134/451 (29%), Positives = 225/451 (49%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A ++  L  +++ ++      + +  + Q++  +  +  T  Q  
Sbjct: 503 WERLKERTKSKVKDIARELIKLYAKRKAEQG--FQFSPDSYLQQELEASFIYEDTPDQIK 560

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           +  D+ +DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY 
Sbjct: 561 STADVKKDMESTLPMDRLVCGDVGFGKTEVAIRAAFKAVTDSKQVAVLVPTTVLALQHYN 620

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K   ++    +E ++        ++ L+R+  G   I+IGTH L   S+++  L L+I
Sbjct: 621 TFKDRLKDFPCSIEYLSRARTAKQTKEVLDRLEKGDVDIVIGTHKLVGKSVKFNDLGLLI 680

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL +       L MTATPIPRTL  + +G  D+S I   P  R P++
Sbjct: 681 IDEEQKFGVSVKEKLKEMKVNVDTLTMTATPIPRTLQFSLMGARDLSIINTPPPNRYPVQ 740

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +  D + E +++ ++   + +++  +I+     N  ++      L       +A
Sbjct: 741 TEVHVFDE-DVIREAIQLEMNRNGQVFFVNNRIQ-----NIYNIEAMIRRLVPG--CRVA 792

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M     E ++  F +    +L+ATT+IE GID+ +A+ III +A +FGL+ LHQL
Sbjct: 793 VGHGQMPADKLEEIIVDFIDYEYDVLVATTIIESGIDISNANTIIINSAHNFGLSDLHQL 852

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR    + C LL      L+  +  RL  L+       GF IA +DL  R  G +L
Sbjct: 853 RGRVGRSNRKAFCYLLAPELSLLTPEARRRLQALETFAELGSGFNIAMQDLDIRGAGNML 912

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG    L    E +  +L  A  + K 
Sbjct: 913 GAEQSGFIADL--GYETYQKILNEAVHELKD 941


>gi|254502678|ref|ZP_05114829.1| transcription-repair coupling factor [Labrenzia alexandrii DFL-11]
 gi|222438749|gb|EEE45428.1| transcription-repair coupling factor [Labrenzia alexandrii DFL-11]
          Length = 1161

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 233/457 (50%), Gaps = 19/457 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPT 274
            D       + R A  +    +IA  L++   ++ +     VE       +     P+  T
Sbjct: 558  DKLGGGAWQARKAKLKKRILEIADGLIKTAAERALKTAPVVETPEGVYDEFATKFPYEET 617

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q +AI  + +D+S    M R++ GDVG GKT VAL A   A  +G Q  ++ P  +LA
Sbjct: 618  DDQLNAIDSVFEDLSSGRPMDRLVCGDVGFGKTEVALRAAFLAAMSGRQVAVVVPTTLLA 677

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++   +      I V   +  +P     +  + IA G   I++GTHAL   SIQ+  
Sbjct: 678  RQHFKTFSERFHGLPINVAHASRLVPTRQLTQTKKGIADGSVDIVVGTHALLGKSIQFRD 737

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S I   P  
Sbjct: 738  LGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRTLQLALTGVRELSLIATPPVD 797

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  V E L      G +++++CP++ +          ER + L E  
Sbjct: 798  RLAVRTFVSPFDPL-VVREALLREHYRGGQSFYVCPRLSDIA--------ERRDFLEEAV 848

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M   + E VM++F  G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 849  PELKVAVAHGQMPPGELEDVMNAFYEGKYNVLLSTTIVESGLDIPTANTLIVHRADMFGL 908

Query: 574  AQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            +QL+QLRGRVGR +  +  +     +  L+  +  RL VL++ E    GF +A  DL  R
Sbjct: 909  SQLYQLRGRVGRSKTRAYALFTVPANKTLTPTAERRLKVLQSLETLGAGFQLASHDLDIR 968

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
              G +LG +QSG         EL+  +LE A    K 
Sbjct: 969  GAGNLLGDEQSGHI--KEVGFELYQQMLEEAVAKLKD 1003


>gi|237715944|ref|ZP_04546425.1| transcription-repair coupling factor [Bacteroides sp. D1]
 gi|229443591|gb|EEO49382.1| transcription-repair coupling factor [Bacteroides sp. D1]
          Length = 1131

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 226/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 515 WEKLKERTKSKIKDIARDLIKLY--SQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSK 572

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 573 ATIDVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 632

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++  +     VE ++     A  +  L+ +  G   I+IGTH +    +Q+  L L+I
Sbjct: 633 TFRERLKGLPCRVEYLSRARTAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLI 692

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+  P  R PI+
Sbjct: 693 VDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQ 752

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + + +   +S   + +++  +I    E   ++++ER           +A
Sbjct: 753 TEVHTFNE-EVITDAINFEMSRNGQVFFVNNRIANLPE--LKAMIERH-----IPDCRVA 804

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 805 IGHGQMEPTELEKIILDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 864

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+     RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 865 RGRVGRSNKKAFCYLLAPPLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLL 924

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 925 GAEQSGFVADL--GYETYQKILTEAVHELK 952


>gi|294643129|ref|ZP_06720961.1| transcription-repair coupling factor [Bacteroides ovatus SD CC 2a]
 gi|292641537|gb|EFF59723.1| transcription-repair coupling factor [Bacteroides ovatus SD CC 2a]
          Length = 1119

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 226/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 503 WEKLKERTKSKIKDIARDLIKLY--SQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSK 560

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 561 ATIDVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 620

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++  +     VE ++     A  +  L+ +  G   I+IGTH +    +Q+  L L+I
Sbjct: 621 TFRERLKGLPCRVEYLSRARTAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLI 680

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+  P  R PI+
Sbjct: 681 VDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQ 740

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + + +   +S   + +++  +I    E   ++++ER           +A
Sbjct: 741 TEVHTFNE-EVITDAINFEMSRNGQVFFVNNRIANLPE--LKAMIERH-----IPDCRVA 792

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 793 IGHGQMEPTELEKIILDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 852

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+     RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 853 RGRVGRSNKKAFCYLLAPPLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLL 912

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 913 GAEQSGFVADL--GYETYQKILTEAVHELK 940


>gi|291456465|ref|ZP_06595855.1| transcription-repair coupling factor [Bifidobacterium breve DSM
            20213]
 gi|291381742|gb|EFE89260.1| transcription-repair coupling factor [Bifidobacterium breve DSM
            20213]
          Length = 1196

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 127/452 (28%), Positives = 230/452 (50%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 596  DWAATKAKARKHVHEIADDLIKLYSARQRA--KGFAFSPDTPWQKELEDAFPYQETADQL 653

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH 
Sbjct: 654  TTIDEVKSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHQ 713

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E      +   + V  ++           +E + +G   ++IGTH L    I++  L LV
Sbjct: 714  ETFTDRFEGFPVNVAAMSRFQTTKEINATIEGLENGMVDVVIGTHKLLNPKIKFKDLGLV 773

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 774  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 833

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  ++++       S+ ++ ++L     + +
Sbjct: 834  LTYVGAYED-AQVTAAVRRELLRGGQVFYVHNRVQDIS-----SIADKIHTLVPE--ARV 885

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 886  GIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 945

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 946  LRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 1005

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 1006 LGDEQSGHIE--GVGFDLYVRMVSEAVEKYKE 1035


>gi|262407555|ref|ZP_06084103.1| transcription-repair coupling factor [Bacteroides sp. 2_1_22]
 gi|262354363|gb|EEZ03455.1| transcription-repair coupling factor [Bacteroides sp. 2_1_22]
          Length = 1124

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 226/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 508 WEKLKERTKSKIKDIARDLIKLY--SQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSK 565

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 566 ATIDVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 625

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++  +     VE ++     A  +  L+ +  G   I+IGTH +    +Q+  L L+I
Sbjct: 626 TFRERLKGLPCRVEYLSRARTAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLI 685

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+  P  R PI+
Sbjct: 686 VDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQ 745

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + + +   +S   + +++  +I    E   ++++ER           +A
Sbjct: 746 TEVHTFNE-EVITDAINFEMSRNGQVFFVNNRIANLPE--LKAMIERH-----IPDCRVA 797

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 798 IGHGQMEPTELEKIILDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 857

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+     RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 858 RGRVGRSNKKAFCYLLAPPLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLL 917

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 918 GAEQSGFVADL--GYETYQKILTEAVHELK 945


>gi|242279458|ref|YP_002991587.1| transcription-repair coupling factor [Desulfovibrio salexigens DSM
            2638]
 gi|242122352|gb|ACS80048.1| transcription-repair coupling factor [Desulfovibrio salexigens DSM
            2638]
          Length = 1149

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 141/488 (28%), Positives = 243/488 (49%), Gaps = 21/488 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     +     E +AG++  +   +  K   G       ++  +      F  T  QE 
Sbjct: 559  WAKTREKARKAIEKIAGELVEMYAYR--KIAKGYAYGPLDEMYWEFESTFGFEETPDQEK 616

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+D+ +DM     M R++ GDVG GKT VAL A   AV  G Q V++ P  +LA+QHY+
Sbjct: 617  AIQDVFRDMESPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVVLLCPTTVLAEQHYQ 676

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +  +   + V +++  +P++ +++ LE++A G+  I+IGTH +    ++   L L+I
Sbjct: 677  TFVQRMEGFPVTVGMLSRFVPKSRQKRVLEQMAAGELDILIGTHRVLSKDVEAPNLGLLI 736

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV+ + ++ +       L +TATPIPRTL L+  G   +S I   P  RKP++
Sbjct: 737  LDEEQRFGVRHKERVKEMRKNIDALTLTATPIPRTLQLSLSGVRSLSTIETPPVDRKPVE 796

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +I  +    +   +   L  G + +W+  +++  +      VVE    L     + I 
Sbjct: 797  TALIERDE-AMLASVVARELERGGQVFWVHNRVQGLE-----RVVEFVKKLAPD--AKIG 848

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M++ + E  +  F +    +L+AT +IE G+D  +A+ +I++ A+ FGL QL+QL
Sbjct: 849  MAHGQMTEKNLEETIHKFWHKELDILVATAIIESGLDFPNANTLIVDQAQMFGLGQLYQL 908

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +           LS+ +  R+ ++   +    GF +A EDL+ R  G IL
Sbjct: 909  RGRVGRSTRQAYAYFAVSSLDSLSEKAKRRMQIILQLDYLGAGFKVAMEDLRLRGAGNIL 968

Query: 635  GIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYN 691
            G  QSG        +    L + +  I   D+  +   DP++  V    +    ++    
Sbjct: 969  GEVQSGQMAKVGLDLFLEMLDEEVRRIKGDDSAQV--SDPEMNFVFKAHL-PEDFVPDAR 1025

Query: 692  EAFQFIRA 699
            E  ++ RA
Sbjct: 1026 ERLRYYRA 1033


>gi|315607772|ref|ZP_07882765.1| transcription-repair coupling factor [Prevotella buccae ATCC 33574]
 gi|315250241|gb|EFU30237.1| transcription-repair coupling factor [Prevotella buccae ATCC 33574]
          Length = 1155

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 158/587 (26%), Positives = 259/587 (44%), Gaps = 35/587 (5%)

Query: 94  LNDGTGEITLLFFYRKT---EMLKNVFFEGRKITVTGKIKKLKNRIIMVHP-HYIFHNSQ 149
             D    + L FF          K            GK+      +  + P  YI H   
Sbjct: 425 FTDD--ALKLCFFTDHQIFDRFHKYNLRSDAARA--GKMALTMKELQEMEPGDYIVHV-- 478

Query: 150 DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209
           D        +  +PTG S     +II +   ++ V    + K  + K       E     
Sbjct: 479 DFGIGKFGGLVRVPTGGSYQEMIRIIYQNNDKVDVSIHSLYK--ISKYRRQDTGE----P 532

Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
                     W           + +A  +  L  R++ +   G   + +  +  ++  + 
Sbjct: 533 PRLSTLGTGAWDRLKERTKKKIKDIARDLIKLYARRRRE--KGFAYSADSYLQHELEASF 590

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            +  T  Q  A +D+  DM     M R++ GDVG GKT VA+ A   A     Q  ++ P
Sbjct: 591 LYEDTPDQNKATQDVKSDMESGRPMDRLVCGDVGFGKTEVAIRAAFKAACDSKQVAVLVP 650

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA QHY+      +   + VE ++        ++ L  +A G+  I+IGTH L   +
Sbjct: 651 TTVLAFQHYQTFNSRLKGLPVRVEYLSRARSAKETKQVLADLAEGKIDILIGTHKLIGKA 710

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++++ L L+I+DE+ +FGV  + KL +       L M+ATPIPRTL  + +G  D+S I 
Sbjct: 711 VKWHDLGLLIIDEEQKFGVSTKEKLRKLKVNVDTLTMSATPIPRTLQFSLMGARDMSIIR 770

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R PI T +      + + + +   +S   + Y++  +I         ++ E    
Sbjct: 771 TPPPNRYPIHTELASYGH-EVIADAINFEMSRNGQVYFVNDRIS--------NLPEIAAL 821

Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           + ++     IAI HG+M   + E ++  F N    +L++TT++E GID+ +A+ III +A
Sbjct: 822 IKKYVPDCRIAIGHGQMKPEELEQIIMGFMNYDYDVLLSTTIVENGIDISNANTIIINDA 881

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEE 623
             FGL+ LHQ+RGRVGR    + C LL  P   L+  +  RL  L+N      GF +A +
Sbjct: 882 HRFGLSDLHQMRGRVGRSNRKAFCYLLAPPKSVLTPEARRRLEALENFSGLGSGFNLAMQ 941

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           DL  R  G +LG +QSG  + L    E +  +L  A  + K+   QD
Sbjct: 942 DLDIRGAGNLLGAEQSGFMEDL--GYETYQKILSQAVTELKNEEFQD 986


>gi|254453067|ref|ZP_05066504.1| transcription-repair coupling factor [Octadecabacter antarcticus
           238]
 gi|198267473|gb|EDY91743.1| transcription-repair coupling factor [Octadecabacter antarcticus
           238]
          Length = 1154

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 141/449 (31%), Positives = 230/449 (51%), Gaps = 17/449 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   + +      +     + ++ L   P++ T
Sbjct: 545 DKLGGGAWQAKKAKLKERIREMAERLIRVAAERELRTAPALTPPEDMWEQFLARFPYAET 604

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI+D+L ++     M R++ GDVG GKT VA+ A   A  +G Q  I+AP  +LA
Sbjct: 605 DDQLRAIEDVLDNLGSGKPMDRLVCGDVGFGKTEVAIRAAFVAAMSGVQVAIVAPTTLLA 664

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY+   +  +   I V  ++  +         + +A G   I+IGTHAL   +I++  
Sbjct: 665 RQHYKGFAERFRGFPINVRTLSRFVSAKEAALTKDGMAKGTVDIVIGTHALLAKNIRFKD 724

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+++DE+  FGVQ + +L Q  T  HVL +TATPIPRTL L+  G  ++S I   P  
Sbjct: 725 LGLLVIDEEQHFGVQHKERLKQMRTDIHVLTLTATPIPRTLQLSLSGVRELSIIGTPPVD 784

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P+I +  E       E         
Sbjct: 785 RLAIRTYVSEFDTV-TIREALLREHYRGGQSFFVVPRISDLPEIEAFIRDEV-------P 836

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             S  I  G+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +I+  A+ FGLA
Sbjct: 837 EVSFVIASGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIVHRADMFGLA 896

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRK 629
           QL+Q+RGRVGR +  +   L Y P   L+  +  RL VL +      GF +A +DL  R 
Sbjct: 897 QLYQIRGRVGRSKARAYAYLTYKPRQKLTPQAEKRLRVLGSIDTLGAGFTLASQDLDIRG 956

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            G +LG +QSG         EL+ S+LE 
Sbjct: 957 AGNLLGEEQSGQM--REVGYELYQSMLEE 983


>gi|224026146|ref|ZP_03644512.1| hypothetical protein BACCOPRO_02902 [Bacteroides coprophilus DSM
           18228]
 gi|224019382|gb|EEF77380.1| hypothetical protein BACCOPRO_02902 [Bacteroides coprophilus DSM
           18228]
          Length = 845

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 144/469 (30%), Positives = 233/469 (49%), Gaps = 17/469 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q K+E G   + +  +  ++  +  +  T  Q  
Sbjct: 232 WEKIKERTKTKIKDIARDLIKLY--SQRKQEKGFKYSPDSFLQHELEASFLYEDTPDQLK 289

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QHY+
Sbjct: 290 ATQDVKADMESDRPMDRLVCGDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHYQ 349

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K  +     V+ ++         + L+ +A+G  +I+IGTH +   S+++  L L+I
Sbjct: 350 TFSKRLEGMPCKVDYLSRARTAKDTSRILKELANGDINILIGTHKIIGKSVKFKDLGLLI 409

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 410 IDEEQKFGVSVKEKLRQIKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 469

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + E +   +S   + +++  +I+   E   ++++ER           + 
Sbjct: 470 TEVHTFNE-EIITEAINFEMSRNGQVFFVNNRIQNLPE--LKAMIER-----NIPDCRVC 521

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 522 IGHGQMQPEELEKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 581

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 582 RGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 641

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           G +QSG    L    E +  +L  A  + K+    D     ++    +I
Sbjct: 642 GAEQSGFIADL--GYETYQKILNEAVTELKNEEFADLYAEEIKAGEEKI 688


>gi|313772670|gb|EFS38636.1| transcription-repair coupling factor [Propionibacterium acnes
            HL074PA1]
 gi|313810893|gb|EFS48607.1| transcription-repair coupling factor [Propionibacterium acnes
            HL083PA1]
 gi|313834448|gb|EFS72162.1| transcription-repair coupling factor [Propionibacterium acnes
            HL056PA1]
 gi|314974450|gb|EFT18545.1| transcription-repair coupling factor [Propionibacterium acnes
            HL053PA1]
 gi|314977360|gb|EFT21455.1| transcription-repair coupling factor [Propionibacterium acnes
            HL045PA1]
 gi|314985541|gb|EFT29633.1| transcription-repair coupling factor [Propionibacterium acnes
            HL005PA1]
 gi|315097614|gb|EFT69590.1| transcription-repair coupling factor [Propionibacterium acnes
            HL038PA1]
 gi|327331627|gb|EGE73366.1| transcription-repair coupling factor [Propionibacterium acnes
            HL096PA2]
 gi|327446976|gb|EGE93630.1| transcription-repair coupling factor [Propionibacterium acnes
            HL043PA1]
 gi|327449987|gb|EGE96641.1| transcription-repair coupling factor [Propionibacterium acnes
            HL043PA2]
 gi|328761618|gb|EGF75134.1| transcription-repair coupling factor [Propionibacterium acnes
            HL099PA1]
          Length = 1208

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 135/489 (27%), Positives = 229/489 (46%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 599  DWRKRKARARKAVREIAAELIKLYAARQA--TKGHAFGPDTAWQRELEGAFAYVETPDQL 656

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +   D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 657  TTFADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 716

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 717  QTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEVEFKDLGLV 776

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 777  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPV 836

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +         +   L     + I
Sbjct: 837  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIE-----KTAAKLRELVPE--ARI 888

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 889  VTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQ 948

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 949  LRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNL 1008

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 1009 LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETE 1066

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1067 RLRLEMYKR 1075


>gi|217076282|ref|YP_002333998.1| transcription-repair coupling factor [Thermosipho africanus TCF52B]
 gi|217036135|gb|ACJ74657.1| transcription-repair coupling factor [Thermosipho africanus TCF52B]
          Length = 909

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 142/503 (28%), Positives = 255/503 (50%), Gaps = 27/503 (5%)

Query: 163 PTGLSVDLFKK--IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEW 220
            T ++    ++  +I++       +P     DL+QK       E   +       K   W
Sbjct: 288 TTKITQKDLEREFLILQFNDSKLFVP-TDRLDLVQKY--IGTNENVTL----DNLKKNNW 340

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
           +   ++  +  E +  +I  L +    K   GI +  + ++ ++  +  P   T+ Q  A
Sbjct: 341 SKRVKKAKSQIEKIVKEI--LRINALRKNTKGISLPGDSELEKEFAKTFPHIETQDQLKA 398

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I+++ +D+S +  M R+L GD G GKT VA+ A   A  +G Q  ++ P  +LA+QHYE 
Sbjct: 399 IQEVSEDLSSEKNMDRLLAGDAGYGKTEVAMRAAFKAAISGKQVAVLVPTTVLARQHYEN 458

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            KK  +   I VE+   ++ +  + +  ++I  G   ++IGTH L   SI++  L L+I+
Sbjct: 459 FKKRFEPFGINVELYDSSLTKKQKDEVKQKIETGITDVVIGTHGLL-KSIKFSDLGLLII 517

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+ +FGVQQ+  L +     ++L M+ATPIPRTL +   G  D+S I   P GRK I+ 
Sbjct: 518 DEEQKFGVQQKEALKKLRINVNILSMSATPIPRTLHMALSGIKDMSVIKTPPFGRKNIQV 577

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519
            +   +    + + +   ++ G +  ++  ++ + +        +    L E     SI 
Sbjct: 578 YVNTYDE-KIIRQAIMREINRGGQVLYVHNRVNDIE--------DVAKKLKEIVPEVSID 628

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I +G+M     E V++ F +G   +L+AT++IE G+D+ +A+ +I+++A  +GLAQL+QL
Sbjct: 629 IANGQMPKKRMEKVIEEFYHGKLDVLVATSIIENGVDIPNANTLIVDDAHRYGLAQLYQL 688

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636
           RGRVGR ++ +     +   ++K +  RL  +K       GF IA +D++ R  G ILG+
Sbjct: 689 RGRVGRSDKRAFAYFFHPSKINKVAKERLKAIKEIMGPGSGFQIALKDMEIRGIGNILGL 748

Query: 637 KQSGMPKFLIAQPELHDSLLEIA 659
           +Q G    +      +  +LE  
Sbjct: 749 EQHGFINDI--GFHYYFEILEEV 769


>gi|257126999|ref|YP_003165113.1| transcription-repair coupling factor [Leptotrichia buccalis
           C-1013-b]
 gi|257050938|gb|ACV40122.1| transcription-repair coupling factor [Leptotrichia buccalis
           C-1013-b]
          Length = 1068

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 149/455 (32%), Positives = 237/455 (52%), Gaps = 24/455 (5%)

Query: 225 RERLAYDELLA---GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
           R+R   +E +     ++  +  R+Q +         +    ++   N PF  T+ Q +AI
Sbjct: 479 RKRKKLEEDIQKFAAELIKIQARRQSQNG--FVYQKDTVWQEEFEANFPFEETEDQRNAI 536

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            D+ +DM     M RI+ GDVG GKT VA+ A   A++ G Q V++AP  +LA+QH+E  
Sbjct: 537 NDVKKDMESPQIMDRIVCGDVGYGKTEVAMRAAFKAIDNGKQVVMVAPTTVLAEQHFERF 596

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
           K+  +N  I +E ++  + ++     L+ + +G   ++IGTH L  D +Q+  L L+I+D
Sbjct: 597 KRRFENYPITIENLSR-LTKSKSTDILKNLKNGIIDLVIGTHRLLSDDVQFKNLGLLIID 655

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+ +FGV+ + KL  +     VL +TATPIPRTL L  LG  +IS I   P  R PI T 
Sbjct: 656 EEQKFGVKAKEKLKSQREKLDVLTLTATPIPRTLNLAMLGIREISIIDTPPTNRLPIITE 715

Query: 462 IIPINRIDEVIER-LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SI 518
           I+  +  +E+I+  +   LS   + ++I   +        +++ E+   L E       I
Sbjct: 716 ILDWD--EEIIKMAILRELSRDGQVFYIYNDV--------KNMKEKLKELKEMLPDFVKI 765

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I+G++   + +  +  F+NG   +LIA+T+IE GIDV +A+ I+IEN    GL+Q++Q
Sbjct: 766 EFINGQLPPKEIKDKLLRFENGQFDILIASTIIENGIDVGNANTILIENFTGLGLSQVYQ 825

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE----DGFLIAEEDLKQRKEGEIL 634
           L+GRVGR      C LL    ++K    +   +   E     GF I+ EDLK R  GEIL
Sbjct: 826 LKGRVGRSNRQGYCYLLKTRNITKQGRQKEESMLKVEGIKSGGFQISMEDLKIRGAGEIL 885

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           G KQ G  +       +   L E  RK     + +
Sbjct: 886 GDKQHGTIETFGYDLYI-KMLNEEIRKQKGEFIEK 919


>gi|254430155|ref|ZP_05043858.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001]
 gi|197624608|gb|EDY37167.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001]
          Length = 1189

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 149/462 (32%), Positives = 240/462 (51%), Gaps = 18/462 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W+            +A  +  L    +  K  G P   +G    ++  + P+ PT  Q  
Sbjct: 568  WSKAKERARKAVRRVALDLVKLYA--ERHKTPGFPFPPDGPWQNELEDSFPYEPTPDQVK 625

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI D+ +DM Q   M R++ GDVG GKT VA+ A+  AV AG Q  ++AP  +LAQQH+ 
Sbjct: 626  AIADVKRDMEQAQPMDRLVCGDVGFGKTEVAIRAIFKAVTAGRQVAMLAPTTVLAQQHWR 685

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             + +      + V ++      A R+   E +A G   +++GTH L     ++ +L L++
Sbjct: 686  SLSERFAPYPVKVSLLNRFRTAAERKLIQEGLAAGTVDVVVGTHQLLGKGTRFKQLGLLV 745

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV Q+ K+        VL ++ATPIPRTL ++  G  ++S IT  P  R+PIK
Sbjct: 746  VDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIK 805

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +  ++  + V   ++  L  G + +++ P++E  +E     V ER   +       +A
Sbjct: 806  THLAALDE-EAVRSAIRQELDRGGQIFYVVPRVEGIEE-----VAERLRQMLPGLQLLVA 859

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              HG+M++ + ES M +F  G   L++ TT++E G+D+   + I+IE+A  FGLAQL+QL
Sbjct: 860  --HGQMAEGELESAMVAFNAGEADLMLCTTIVESGLDIPRVNTILIEDAHRFGLAQLYQL 917

Query: 580  RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +   L Y     LS+ +  RL  ++       G+ +A  D++ R  G +L
Sbjct: 918  RGRVGRSGIQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNLL 977

Query: 635  GIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDL 673
            G++QSG  +   F +    L +SL EI  +D   +     DL
Sbjct: 978  GVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPKVDDTQIDL 1019


>gi|293373528|ref|ZP_06619880.1| transcription-repair coupling factor [Bacteroides ovatus SD CMC 3f]
 gi|292631492|gb|EFF50118.1| transcription-repair coupling factor [Bacteroides ovatus SD CMC 3f]
          Length = 1119

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 226/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 503 WEKLKERTKSKIKDIARDLIKLY--SQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSK 560

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 561 ATIDVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 620

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++  +     VE ++     A  +  L+ +  G   I+IGTH +    +Q+  L L+I
Sbjct: 621 TFRERLKGLPCRVEYLSRARTAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLI 680

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+  P  R PI+
Sbjct: 681 VDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQ 740

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + + +   +S   + +++  +I    E   ++++ER           +A
Sbjct: 741 TEVHTFNE-EVITDAINFEMSRNGQVFFVNNRIANLPE--LKAMIERH-----IPDCRVA 792

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 793 IGHGQMEPTELEKIILDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 852

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+     RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 853 RGRVGRSNKKAFCYLLAPPLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLL 912

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 913 GAEQSGFVADL--GYETYQKILTEAVHELK 940


>gi|148270474|ref|YP_001244934.1| transcription-repair coupling factor [Thermotoga petrophila RKU-1]
 gi|147736018|gb|ABQ47358.1| transcription-repair coupling factor [Thermotoga petrophila RKU-1]
          Length = 893

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 146/488 (29%), Positives = 259/488 (53%), Gaps = 22/488 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++     E    ++  L MR+Q  + + +P   + ++ +K   + P+  T  Q+ 
Sbjct: 321 WKQTLKKVREDIEKKIRELVELYMRRQEIQGLSLP--GDPELEEKFAESFPYIETPDQQQ 378

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           +I+++L D++ +  M R+L GD G GKT VAL A   AV +G Q  ++ P  +LA+QHYE
Sbjct: 379 SIEEVLSDLASEKPMDRLLCGDAGVGKTEVALRAAFRAVASGKQVAVLVPTTVLARQHYE 438

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  +   + VE++  +     +++ +E++  G+  IIIGTH+L  + I++  L LVI
Sbjct: 439 NFKERMEPFGVKVELLDSSRTPREKKEIIEKLKKGEIDIIIGTHSLLNERIEFSDLGLVI 498

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV+Q+ +  +   + +VL ++ATPIPRTL +   G  D S I   P GRKP+ 
Sbjct: 499 IDEEQKFGVEQKERFKKLRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVY 558

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
             +   +  D V   +   ++ G +  ++  ++EE          E F  L   F    I
Sbjct: 559 VYVAEYSD-DLVKGAVIREINRGGQVIYVHNRVEEL--------PEVFEKLKRMFPELEI 609

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+ HG+MS    E ++  F  G   +L+ TT+IE G+D+ +A+ +I+++A  +GL+QL+Q
Sbjct: 610 AVAHGKMSRRTMERIVHEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLSQLYQ 669

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
           LRGRVGR +  +    LY     +++  RL VLK+      G  IA +D++ R  G++LG
Sbjct: 670 LRGRVGRSDRRAFAYFLYPKGTPRSALERLKVLKSYTGFGSGLQIALKDMELRGVGDVLG 729

Query: 636 IKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQDP---DLTSVRGQSIRILLYLYQY 690
           ++Q G    +    +L++ +L+  I R   + I  +     ++ +  G+      Y+   
Sbjct: 730 LEQHG--NVVSVGLKLYNEILKETITRFKERRIEKKHSVNVEIENPPGRFFIPEDYVQNP 787

Query: 691 NEAFQFIR 698
            E  +  R
Sbjct: 788 VERLRLYR 795


>gi|237722279|ref|ZP_04552760.1| transcription-repair coupling factor [Bacteroides sp. 2_2_4]
 gi|229448089|gb|EEO53880.1| transcription-repair coupling factor [Bacteroides sp. 2_2_4]
          Length = 1124

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 226/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 508 WEKLKERTKSKIKDIARDLIKLY--SQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSK 565

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 566 ATIDVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 625

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++  +     VE ++     A  +  L+ +  G   I+IGTH +    +Q+  L L+I
Sbjct: 626 TFRERLKGLPCRVEYLSRARTAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLI 685

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+  P  R PI+
Sbjct: 686 VDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQ 745

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + + +   +S   + +++  +I    E   ++++ER           +A
Sbjct: 746 TEVHTFNE-EVITDAINFEMSRNGQVFFVNNRIANLPE--LKAMIERH-----IPDCRVA 797

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 798 IGHGQMEPTELEKIILDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 857

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+     RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 858 RGRVGRSNKKAFCYLLAPPLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLL 917

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 918 GAEQSGFVADL--GYETYQKILTEAVHELK 945


>gi|260591441|ref|ZP_05856899.1| transcription-repair coupling factor [Prevotella veroralis F0319]
 gi|260536633|gb|EEX19250.1| transcription-repair coupling factor [Prevotella veroralis F0319]
          Length = 1187

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 135/451 (29%), Positives = 233/451 (51%), Gaps = 19/451 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W           + LA  +  L  +++ +   G   + +  +  ++  +  +  T  Q  
Sbjct: 566  WDRLKERAKKRIKDLARDLIKLYAKRRRE--KGFAFSPDSFMQHELEASFLYEDTPDQLK 623

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            A +++ QDM     M R++ GDVG GKT VA+ A   A     Q  ++ P  +LA QHY+
Sbjct: 624  ATQELKQDMESARPMDRLVCGDVGFGKTEVAIRAAFKAAVDNKQVAVLVPTTVLAFQHYQ 683

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              KK  ++  + V+ ++        ++ +E +A G+ +I++GTH L   +++++ L L+I
Sbjct: 684  TFKKRLKDMPVRVDYLSRARSAKQTKQVIEDLAEGKINILVGTHKLIGKTVKWHDLGLLI 743

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ +FGV  + KL Q  T    L M+ATPIPRTL  + +G  D+S +   P  R PI+
Sbjct: 744  IDEEQKFGVTTKEKLRQLKTNVDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQ 803

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T I   +  + + + +   +S   + Y++  ++         ++ E  N + ++     +
Sbjct: 804  TQIASFSH-EVIADAINFEMSRNGQVYFVNNRVG--------NLPEIANLIKKYVPDCRV 854

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            AI HG+M   + E ++  F N    +L++TT++E GID+ +A+ III  A  FGL+ LHQ
Sbjct: 855  AIGHGQMKPEELEKIIMGFMNYDYDVLLSTTIVENGIDISNANTIIINEAHRFGLSDLHQ 914

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            +RGRVGR  + + C LL  P   L+ ++  RL  L+   D   GF +A +DL  R  G +
Sbjct: 915  MRGRVGRSNKKAFCYLLAPPLAALNSDARHRLLALETFSDLGSGFNLAMQDLDIRGAGNL 974

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            LG +QSG  + L    E +  +L  A  + K
Sbjct: 975  LGSEQSGFMEDL--GYETYQKILSQAVTELK 1003


>gi|167646581|ref|YP_001684244.1| transcription-repair coupling factor [Caulobacter sp. K31]
 gi|167349011|gb|ABZ71746.1| transcription-repair coupling factor [Caulobacter sp. K31]
          Length = 1155

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 143/460 (31%), Positives = 232/460 (50%), Gaps = 21/460 (4%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
                R+  A + L      L+ +    + +     +    +  +     P+  T  Q SA
Sbjct: 554  AWQGRKSKAKERLRVMAEGLIQIAAARQLKSVEETDPPHGVFDEFCARFPYEETDDQLSA 613

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            I D+L+D+     M R++ GDVG GKT VAL A      +G Q  I+ P  +LA+QHY+ 
Sbjct: 614  IADVLEDLGSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVCPTTLLARQHYKT 673

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
             K   Q   + V  ++  +      +  E +A+GQ  I++GTHA+    + +  L LVIV
Sbjct: 674  FKDRFQGWPVKVTRLSRLVTGKEAAETREGLANGQLEIVVGTHAILSKQVSFKDLGLVIV 733

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+  FGV+ + KL +     H+L +TATPIPRTL +   G  ++S I   P  R  ++T
Sbjct: 734  DEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIREMSIIATPPVDRLAVRT 793

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             I P + +  + E L      G +AY++ P+I++ +E       +              +
Sbjct: 794  YISPFDPV-TLREALLREKYRGGQAYYVVPRIKDLEEIEKFLRTQV-------PEVKYVV 845

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+M+    E VM +F  G   +L+ATT++E G+D+  A+ +I+  A+ FGLAQL+Q+R
Sbjct: 846  GHGQMAPTQLEDVMTAFYEGQYDVLLATTIVESGLDIPSANTLIVHRADMFGLAQLYQIR 905

Query: 581  GRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILG 635
            GRVGR +  +   L       ++ ++  RL VL++ +    GF +A  DL QR  G +LG
Sbjct: 906  GRVGRSKARAYAYLTTPNEKQITLSAEKRLKVLQSLDSLGAGFQLASHDLDQRGGGNLLG 965

Query: 636  IKQSGMPKFLIAQPELHDSLLEIA------RKDAKHILTQ 669
             +QSG  K +    EL+  +LE A      R+ A+ ++  
Sbjct: 966  DEQSGHIKEI--GVELYQQMLEDAVAELRERQGAEALIED 1003


>gi|260170991|ref|ZP_05757403.1| transcription-repair coupling factor [Bacteroides sp. D2]
 gi|315919312|ref|ZP_07915552.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693187|gb|EFS30022.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1120

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 226/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 508 WEKLKERTKSKIKDIARDLIKLY--SQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSK 565

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 566 ATIDVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 625

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++  +     VE ++     A  +  L+ +  G   I+IGTH +    +Q+  L L+I
Sbjct: 626 TFRERLKGLPCRVEYLSRARTAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLI 685

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+  P  R PI+
Sbjct: 686 VDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQ 745

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + + +   +S   + +++  +I    E   ++++ER           +A
Sbjct: 746 TEVHTFNE-EVITDAINFEMSRNGQVFFVNNRIANLPE--LKAMIERH-----IPDCRVA 797

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 798 IGHGQMEPTELEKIILDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 857

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+     RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 858 RGRVGRSNKKAFCYLLAPPLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLL 917

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 918 GAEQSGFVADL--GYETYQKILTEAVHELK 945


>gi|291550022|emb|CBL26284.1| transcription-repair coupling factor [Ruminococcus torques L2-14]
          Length = 1118

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 173/613 (28%), Positives = 294/613 (47%), Gaps = 55/613 (8%)

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            +++   I+   GYI++   + +      K  +   +       F +K +  K   +EG+
Sbjct: 386 RQVNPGEIMVTCGYIAEGYEYPM-----LKFTVISESDI-----FGKKKKKKKRKTYEGK 435

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLF-KKIIVEALS 180
           KI    ++K            Y+ H +  +       +Y     + VD   +  +  + +
Sbjct: 436 KIQEFAELKPG---------DYVVHENHGLG------IYQGIEKVEVDAVTRDYMKISYA 480

Query: 181 RLPVLPEWIEK---DLLQKKSFPS-IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
              +L  +I     DL+QK +         N +  P+      W     +     +L+A 
Sbjct: 481 DGGIL--YIPATQMDLIQKYAGADAKPPKLNKLGTPQ------WKKTKGQVKKAVQLIAK 532

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
            +  L   +Q  +  G     +    ++     PF  T+ Q  AI+D  +DM     M R
Sbjct: 533 DLVKLYATRQ--QTEGYVYGPDTVWQREFEEMFPFEETEDQLRAIEDTKKDMESTKIMDR 590

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++ GDVG GKT +A+ A   AV+ G Q V + P  ILAQQHY    +  ++  + V++++
Sbjct: 591 LICGDVGYGKTEIAIRAAFKAVQEGKQVVYLVPTTILAQQHYNTFIQRFKDFPVRVDLMS 650

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
               QA ++K +E +  G   I+IGTH +    I Y  L L+I+DE+ RFGV  + K+ +
Sbjct: 651 RFRTQAQQKKTVEDLKKGLVDIVIGTHRVLSKDIGYKDLGLLIIDEEQRFGVTHKEKIKK 710

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                 VL +TATPIPRTL ++ +G  D+S + E P  R PI+T ++  N  + V E ++
Sbjct: 711 LRENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRMPIQTYVMEYND-EMVREAIE 769

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             L+ G + Y++  ++E   +        R   L     + ++  HG+M++   E +M  
Sbjct: 770 RELARGGQVYYVYNRVENIADLAL-----RVQKLVPD--ARVSYAHGQMNEHQLEDIMYD 822

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F NG   +L++TT+IE G+D+ +A+ +II++A+ FGL+QL+QLRGRVGR   ++   LLY
Sbjct: 823 FINGDIDVLVSTTIIETGLDIANANTMIIQDADRFGLSQLYQLRGRVGRSNRMAYAFLLY 882

Query: 597 HPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
                L + +  RL+ ++   D   GF IA  DL+ R  G +LG  QSG    +     L
Sbjct: 883 QRDKMLKEVAEKRLAAIREFTDLGSGFKIAMRDLEIRGAGNLLGESQSGHMAAVGYD--L 940

Query: 652 HDSLLEIARKDAK 664
           +  +L  A    K
Sbjct: 941 YCKMLNEAVSQLK 953


>gi|288924758|ref|ZP_06418695.1| transcription-repair coupling factor [Prevotella buccae D17]
 gi|288338545|gb|EFC76894.1| transcription-repair coupling factor [Prevotella buccae D17]
          Length = 1155

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 158/587 (26%), Positives = 259/587 (44%), Gaps = 35/587 (5%)

Query: 94  LNDGTGEITLLFFYRKT---EMLKNVFFEGRKITVTGKIKKLKNRIIMVHP-HYIFHNSQ 149
             D    + L FF          K            GK+      +  + P  YI H   
Sbjct: 425 FTDD--ALKLCFFTDHQIFDRFHKYNLRSDAARA--GKMALTMKELQEMEPGDYIVHV-- 478

Query: 150 DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209
           D        +  +PTG S     +II +   ++ V    + K  + K       E     
Sbjct: 479 DFGIGKFGGLVRVPTGGSYQEMIRIIYQNNDKVDVSIHSLYK--ISKYRRQDTGE----P 532

Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
                     W           + +A  +  L  R++ +   G   + +  +  ++  + 
Sbjct: 533 PRLSTLGTGAWDRLKERTKKKIKDIARDLIKLYARRRRE--KGFAYSADSYLQHELEASF 590

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            +  T  Q  A +D+  DM     M R++ GDVG GKT VA+ A   A     Q  ++ P
Sbjct: 591 LYEDTPDQNKATQDVKSDMESGRPMDRLVCGDVGFGKTEVAIRAAFKAACDSKQVAVLVP 650

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA QHY+      +   + VE ++        ++ L  +A G+  I+IGTH L   +
Sbjct: 651 TTVLAFQHYQTFNSRLKGLPVRVEYLSRARSAKETKQVLADLAEGKIDILIGTHKLIGKA 710

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++++ L L+I+DE+ +FGV  + KL +       L M+ATPIPRTL  + +G  D+S I 
Sbjct: 711 VKWHDLGLLIIDEEQKFGVSTKEKLRKLKVNVDTLTMSATPIPRTLQFSLMGARDMSIIR 770

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R PI T +      + + + +   +S   + Y++  +I         ++ E    
Sbjct: 771 TPPPNRYPIHTELASYGH-EVIADAINFEMSRNGQVYFVNDRIS--------NLPEIAAL 821

Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           + ++     IAI HG+M   + E ++  F N    +L++TT++E GID+ +A+ III +A
Sbjct: 822 IKKYVPDCRIAIGHGQMKPEELEQIIMGFINYDYDVLLSTTIVENGIDISNANTIIINDA 881

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEE 623
             FGL+ LHQ+RGRVGR    + C LL  P   L+  +  RL  L+N      GF +A +
Sbjct: 882 HRFGLSDLHQMRGRVGRSNRKAFCYLLAPPKSVLTPEARRRLEALENFSGLGSGFNLAMQ 941

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           DL  R  G +LG +QSG  + L    E +  +L  A  + K+   QD
Sbjct: 942 DLDIRGAGNLLGAEQSGFMEDL--GYETYQKILSQAVTELKNEEFQD 986


>gi|170744353|ref|YP_001773008.1| transcription-repair coupling factor [Methylobacterium sp. 4-46]
 gi|168198627|gb|ACA20574.1| transcription-repair coupling factor [Methylobacterium sp. 4-46]
          Length = 1203

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 140/456 (30%), Positives = 221/456 (48%), Gaps = 17/456 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    ++A  L++   +        +        +     P+  T
Sbjct: 596  DKLGGGAWQARKAKLKRRILEMAGALIKVAAERFLRPAPKLVPPDGTYGEFAARFPYEET 655

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + QE+AI   L D++    M R++ GDVG GKT VAL A   A  +G Q  ++ P  +LA
Sbjct: 656  EDQEAAIAATLGDLTAGRPMDRLICGDVGFGKTEVALRAAFVAAISGRQVAVVVPTTLLA 715

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QHY    +  +   + V   +  +  A  ++  E +A G   I++GTHAL   +I +  
Sbjct: 716  RQHYRTFAERFKGLPVNVAQASRFVSSAELKRVREGLADGTVDIVVGTHALLAKTIGFRD 775

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV  + +L       HVL ++ATPIPRTL L   G  ++S I   P  
Sbjct: 776  LGLIIIDEEQHFGVAHKERLKALRAEVHVLTLSATPIPRTLQLAMTGVRELSIIATPPVD 835

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  V E L      G +A+++ P+IE   E       E         
Sbjct: 836  RLAVRTFVTPFDPL-LVREALLRERYRGGQAFYVVPRIEHLDEVKRFLDREM-------P 887

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + + I HG+M     E VM +F  G   +L++TT++E G+D+  A+ +I+  A+ FGLA
Sbjct: 888  EAKVGIAHGQMPAGQLEDVMTAFYEGKFDILLSTTIVESGLDIPTANTLIVHRADMFGLA 947

Query: 575  QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
            QL+QLRGRVGR +  +  +        L+  +  RL VL++ +    GF +A  DL  R 
Sbjct: 948  QLYQLRGRVGRSKARAYALFTTPEGKALTVQAERRLKVLQSLDTLGAGFQLASHDLDIRG 1007

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             G +LG +QSG         EL+  +LE A    K 
Sbjct: 1008 AGNLLGDEQSGHI--KEVGYELYQQMLEDAVAALKE 1041


>gi|154250423|ref|YP_001411248.1| DEAD/DEAH box helicase domain-containing protein [Fervidobacterium
           nodosum Rt17-B1]
 gi|154154359|gb|ABS61591.1| DEAD/DEAH box helicase domain protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 923

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 143/484 (29%), Positives = 248/484 (51%), Gaps = 18/484 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+    +     E +   +  LL+        G+ +  + ++  +  +  P+  T+ Q  
Sbjct: 352 WSKKVSKAKRNIETIVRDM--LLIHYIRNNTTGVALPGDSELESEFAKTFPYIETEDQLK 409

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+D+ +D+     M R+L GD G GKT VA+ A+  A+ +G QA ++AP  +LA+QHYE
Sbjct: 410 AIQDVFEDLVSGKPMDRLLVGDAGYGKTEVAIRAIFRAIVSGKQAALLAPTTVLARQHYE 469

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            I +  +   I V ++   + +  R + L  + +G+  ++IGTH++   ++ +  L LV+
Sbjct: 470 NIAERFKPFGIRVALLDRFVTKKEREEILRDVKNGKIDLLIGTHSILN-NVVFADLGLVV 528

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV+Q+ K  +     HVL M+ATPIPRTL +      + S+I   P GRK ++
Sbjct: 529 IDEEQKFGVEQKEKFKKLRVNVHVLSMSATPIPRTLHMALSELKEFSEIKTPPFGRKEVQ 588

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
             I P +    V   +   ++ G +  ++  ++    +     V ER   L      SI 
Sbjct: 589 VHIGPFDDR-IVRIAILREINRGGQVIYVHNRVNTIYD-----VYERLKELLPEV--SIV 640

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+ S  + +  +D F +G   +L+ TT++E G+DV +A+ +I+++A  +GLAQL+QL
Sbjct: 641 IGHGQQSKSELKRAIDMFFHGKADVLLCTTIVENGVDVPNANTLIVDDAHRYGLAQLYQL 700

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636
           RGRVGR ++IS     +   ++     RL  +K+      G  IA  D++ R  G + G+
Sbjct: 701 RGRVGRSDKISFAYFFHPKHVNDKVLERLYAIKSYVGPGSGLKIAMRDMEIRGIGAVFGL 760

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHIL--TQDPDLTSVRGQSIRILLYLYQYNEAF 694
           +Q G    +     L   LL+   K++K  L    D +L  + G  I    Y+Y   E  
Sbjct: 761 EQHGYINDIGLNYYL--ELLDETIKESKGELISKVDTELEGIPGSIIIPEAYIYDPFERM 818

Query: 695 QFIR 698
           +F R
Sbjct: 819 RFYR 822


>gi|328956088|ref|YP_004373421.1| transcription-repair coupling factor [Coriobacterium glomerans PW2]
 gi|328456412|gb|AEB07606.1| transcription-repair coupling factor [Coriobacterium glomerans PW2]
          Length = 1187

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 138/451 (30%), Positives = 220/451 (48%), Gaps = 17/451 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W+          + LA  +  L  R+      G     +     ++ +  P+ PT+ Q 
Sbjct: 580  DWSRATVRARNSAKRLAFDLVDLYTRRS--TVAGHAFAPDTPAQLEMEQAFPYEPTRDQI 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI DI  DM     M R+L GDVG GKT VAL A    V+ G Q +++ P  ILAQQHY
Sbjct: 638  EAIGDIKADMEAPKPMDRLLCGDVGFGKTEVALRAAFKCVDNGYQVMVLCPTTILAQQHY 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E + +      I VE+++     +    AL   + G   +++GTH L    +  + L LV
Sbjct: 698  ETLFERFAPFDIEVEVLSRFRTPSELSAALAGFSDGSVDVLVGTHRLLSSDVNPHSLGLV 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGVQ + +L        VL ++ATPIPRT+ +   G  D+S IT  P GR+P+
Sbjct: 758  IIDEEQRFGVQHKEQLKNLREQIDVLTLSATPIPRTMQMAMSGVRDMSLITTPPCGRRPV 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
               +   +  D V   ++  L+   + Y++  +++  +++  R              + +
Sbjct: 818  TVHVGEYD-PDTVSAAIRFELAREGQVYYVSNRVKTIEDAIDRVHEA-------APEARV 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS  + E  M  F      +L+ATT+IE GID    + +IIE+A+  GLAQL+Q
Sbjct: 870  GVAHGKMSSREVEETMIDFTAHRIDVLVATTIIESGIDNPHTNTLIIEDAQRLGLAQLYQ 929

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL---KNTEDGFLIAEEDLKQRKEGEI 633
            L+GRVGR    +    ++    PL++ +  RL  L   +    G  IA  DL+ R  G +
Sbjct: 930  LKGRVGRSASQAFAYFMFPGEQPLTQEATERLCALSEFQELGSGMRIAMRDLEIRGAGSL 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            +G +Q G         +L   +L  A  +A+
Sbjct: 990  VGAEQHG--NLSNVGFDLFTQMLGQAVAEAR 1018


>gi|306820709|ref|ZP_07454337.1| transcription-repair coupling factor [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551319|gb|EFM39282.1| transcription-repair coupling factor [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 701

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 123/414 (29%), Positives = 213/414 (51%), Gaps = 13/414 (3%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +  Q + + G   + +    ++      F  T+ Q  +IK++ +DM     M R+L GDV
Sbjct: 159 LYAQRENQKGYAFSKDTVWQREFESLFAFEETQDQIRSIKEVKKDMENIKPMDRLLCGDV 218

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G GKT VA+  +  A     Q   + P  ILAQQHY+ + +  +N  + VE+++    + 
Sbjct: 219 GYGKTEVAIRGIFKACMDSKQVAFLVPTTILAQQHYKTVSERFENFPLKVEVLSRFKTRK 278

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            + + LE++  G+  +IIGTH +    + +  L L+++DE+ RFGV+ + K+    T   
Sbjct: 279 EQNEILEKLKLGEVDVIIGTHRILSKDVIFKDLGLLVIDEEQRFGVKDKEKIKSLKTNID 338

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL +TATPIPRTL ++  G  D+S + E P  R  + T +    R   +++ ++  +S G
Sbjct: 339 VLTLTATPIPRTLNMSLSGIRDMSVLEEPPNDRLSVITYVTEA-REGIIMDAIEREISRG 397

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            + +++   +E+        +      L  +   ++A  HG+M     E +M  +     
Sbjct: 398 GQVFFVYNSVEDID-----KMSANIKKLVPNVRLAVA--HGQMQPTVLEDIMMDYLEKKY 450

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--L 600
            LL+ TT+IE G+D+ +A+ II+ NA+  GL+QL+QLRGRVGR    +   L+Y     L
Sbjct: 451 DLLLCTTIIETGMDISNANTIIVYNADKMGLSQLYQLRGRVGRSSRQAYAYLMYEKDKVL 510

Query: 601 SKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
           ++ +  RL  ++       GF +A  DL+ R  G +LG  QSG  + +     +
Sbjct: 511 TEIAQKRLKAIRDFTEFGSGFKVAMMDLELRGSGNLLGETQSGHIEEVGYDLYI 564


>gi|160882450|ref|ZP_02063453.1| hypothetical protein BACOVA_00401 [Bacteroides ovatus ATCC 8483]
 gi|156112162|gb|EDO13907.1| hypothetical protein BACOVA_00401 [Bacteroides ovatus ATCC 8483]
          Length = 1120

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 226/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 508 WEKLKERTKSKIKDIARDLIKLY--SQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSK 565

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 566 ATIDVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 625

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++  +     VE ++     A  +  L+ +  G   I+IGTH +    +Q+  L L+I
Sbjct: 626 TFRERLKGLPCRVEYLSRARTAAQTKAVLKGLKDGDVGILIGTHRILGKDVQFKDLGLLI 685

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+  P  R PI+
Sbjct: 686 VDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQ 745

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + + +   +S   + +++  +I    E   ++++ER           +A
Sbjct: 746 TEVHTFNE-EVITDAINFEMSRNGQVFFVNNRIANLPE--LKAMIERH-----IPDCRVA 797

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 798 IGHGQMEPTELEKIILDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 857

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+     RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 858 RGRVGRSNKKAFCYLLAPPLGSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLL 917

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 918 GAEQSGFVADL--GYETYQKILTEAVHELK 945


>gi|331090628|ref|ZP_08339479.1| hypothetical protein HMPREF9477_00122 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401068|gb|EGG80663.1| hypothetical protein HMPREF9477_00122 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 1112

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 170/617 (27%), Positives = 291/617 (47%), Gaps = 55/617 (8%)

Query: 64  ISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           + E  I+   G++++   + +      K  +   T       F +  +  K   +EG+KI
Sbjct: 386 VQEGEILVSFGHVAEGYEYPM-----LKFTVISETDI-----FGKGKKKRKRKVYEGQKI 435

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
                    ++   +    Y+ H +      + + +  +    +   + KI       L 
Sbjct: 436 ---------QSFSELKIGDYVVHENH--GLGIYQGIEKIDVDKTSKDYMKISYAGGGNL- 483

Query: 184 VLPEWIEK---DLLQKKSFPSIAEAFNIIHNPR--KAKDFEWTSPARERLAYDELLAGQI 238
               +I     DL+QK        A      P+  +    EWT    +       +A  +
Sbjct: 484 ----YIPATQLDLIQKY-------ASADAKKPKLNRLGTQEWTKTKTKVRGAVREIAKDL 532

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
             L   +Q ++  G     +    ++     PF  T+ Q  AI+   +DM     M R++
Sbjct: 533 VELYAARQREE--GFVYGPDTVWQKEFEEMFPFEETEDQMLAIEATKRDMESNKIMDRLI 590

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GDVG GKT VA+ A   AV+   Q V + P  ILAQQHY    +  +   + V+++   
Sbjct: 591 CGDVGYGKTEVAIRAAFKAVQENKQVVYLVPTTILAQQHYNTFVQRMKEFPVRVDLMCRF 650

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              A ++K +E    G   II+GTH +  D +++  L L+I+DE+ RFGVQ + K+ +  
Sbjct: 651 RTPAQQKKTIEDTKKGLVDIIVGTHRVLSDDLKFKDLGLLIIDEEQRFGVQHKEKIKKLK 710

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               VL +TATPIPRTL ++ +G  D+S + E P  R PI+T ++  N  + V E ++  
Sbjct: 711 ENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRIPIQTYVMEYND-EMVREAIQRE 769

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           LS   + Y++  ++++ +E       +R  SL     +++   HG+MS+   E +M  F 
Sbjct: 770 LSRQGQVYYVYNKVKDIEEIT-----DRIQSLVPE--AAVTYAHGQMSEHQLEKIMYDFI 822

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           NG   +L++TT+IE G+D+ +A+ +II  A+  GL+QL+QLRGRVGR   ++   +LY  
Sbjct: 823 NGEIDVLVSTTIIETGLDISNANTMIIHEADKLGLSQLYQLRGRVGRSNRMAYAFMLYKR 882

Query: 599 P--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
              L + +  RLS ++   D   GF IA  DL+ R  G +LG +Q G  + +     L+ 
Sbjct: 883 DKLLKEVAEKRLSAIREFTDLGSGFKIAMRDLEIRGAGNLLGAEQHGHMEAVGYD--LYC 940

Query: 654 SLLEIARKDAKHILTQD 670
            +L  A K  K  + ++
Sbjct: 941 KMLNEAVKHLKGEMEEE 957


>gi|329122093|ref|ZP_08250701.1| transcription-repair-coupling factor [Dialister micraerophilus DSM
           19965]
 gi|327466900|gb|EGF12416.1| transcription-repair-coupling factor [Dialister micraerophilus DSM
           19965]
          Length = 1132

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 127/428 (29%), Positives = 216/428 (50%), Gaps = 14/428 (3%)

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W     +     + LA ++  L +  + +   GI    +     +      +  T  Q
Sbjct: 530 IQWERIRNKAKKSIKELAEKL--LKVYAERQLAKGISFLPDSSEQIEFEDAFEYVETPDQ 587

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            SA + I + M     M  +L GDVG GKT VA+ A+   V +G Q++++ P  +LA QH
Sbjct: 588 LSATEKIKKSMESSTPMDMLLCGDVGFGKTEVAMRAVFKCVMSGYQSIVLCPTTVLASQH 647

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           ++   +      + V+++   +  + + K L  +  GQ  ++IGTH++   SI   +L L
Sbjct: 648 FKTFSERMNKFGVNVQLLNRFVKTSEKNKILSGLKSGQIDVLIGTHSVLSKSINCRRLGL 707

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           ++VDE+ RFGV Q+ K     +   +L ++ATPIPRTL ++  G  D++ IT+ P  R  
Sbjct: 708 LVVDEEQRFGVFQKEKWKSLTSGIDILTLSATPIPRTLHMSLSGVRDMAAITQAPQNRHA 767

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           ++T +I  N  D V E +        + Y++  +IE         + +R   + +     
Sbjct: 768 VQTYVIEYNE-DIVKEAVLREKERNGQVYFVYNRIESID-----MMKDRLEKIFKG-KVR 820

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I + +GRM   + E VM  F      +L+ TT+IE G+D  +A+ III +A+  GL+QL+
Sbjct: 821 IGVAYGRMKGSELEKVMFDFYQDKYDVLLCTTLIENGLDQPNANTIIIYDADFMGLSQLY 880

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           Q++GRVGR ++I+     Y     LS+ +  RL+ ++       GF IA  DL+ R  G 
Sbjct: 881 QMKGRVGRSDKIAKAYFFYRKDKVLSEVAEKRLNTIREFTELGSGFKIAMRDLEIRGAGN 940

Query: 633 ILGIKQSG 640
           +LG +Q G
Sbjct: 941 LLGSEQHG 948


>gi|83858282|ref|ZP_00951804.1| transcription-repair coupling factor [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853105|gb|EAP90957.1| transcription-repair coupling factor [Oceanicaulis alexandrii
           HTCC2633]
          Length = 1162

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 140/446 (31%), Positives = 230/446 (51%), Gaps = 19/446 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +   +       +A Q+  +   +  +    I       +  +     P+  T  Q +
Sbjct: 562 WQARKAKAKQRLRDMADQLIKIAAARNARDAEII--TPPSGLYDEFAARFPYVETDDQLN 619

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI D+  D ++   M R++ GDVG GKT VAL A   A  +G Q  I+AP  +LA+QH++
Sbjct: 620 AIDDVFSDFAKGRPMDRLICGDVGFGKTEVALRAAFVAAMSGRQVAIVAPTTLLARQHFK 679

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++  +   + V  ++  +         + +A G   I+IGTHA+   ++++  L L++
Sbjct: 680 TFEERFKGWPVKVRQLSRLVSTKEATATRKELADGTCEIVIGTHAILAKTVKFADLGLLV 739

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+ + +L +  T  HVL +TATPIPRTL L+  G  D+S I   P  R  ++
Sbjct: 740 IDEEQRFGVKHKERLKELKTDVHVLTLTATPIPRTLQLSMAGIRDLSIIATPPVDRLAVR 799

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T + P + +  V E L      G ++Y++ P+I + +        +  + L E     S 
Sbjct: 800 TYVTPFDSV-TVREALLRERYRGGQSYYVAPRISDLE--------DIASFLREQVPEVSF 850

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I HG+M+    E +M +F  G   +L++TT++E GID+  A+ +II  A+ FGLA L+Q
Sbjct: 851 VIAHGQMAGGQLEDIMTAFYEGRYDVLVSTTIVESGIDIPTANTMIIHRADMFGLAPLYQ 910

Query: 579 LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGR +  +   L    +  L+  +  RL +L++ +    GF +A  DL  R  G +
Sbjct: 911 LRGRVGRAKARAYAYLTTPANQKLTATADKRLKILQSLDSLGAGFTLASHDLDLRGGGNL 970

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIA 659
           LG +QSG  K      EL+ S+LE A
Sbjct: 971 LGEEQSGHIKD--VGVELYQSMLEEA 994


>gi|225568648|ref|ZP_03777673.1| hypothetical protein CLOHYLEM_04726 [Clostridium hylemonae DSM
           15053]
 gi|225162576|gb|EEG75195.1| hypothetical protein CLOHYLEM_04726 [Clostridium hylemonae DSM
           15053]
          Length = 1113

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 169/611 (27%), Positives = 291/611 (47%), Gaps = 57/611 (9%)

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            E++   I+T  G++++   + +      K  +   T       F +  +  K   +EGR
Sbjct: 384 REVASGEIMTAYGHVAEGYEYPM-----LKFTVIAETDI-----FGKVKKKKKRKSYEGR 433

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK-IIVEALS 180
           KI         ++   +    Y+ H +  +       +Y     + VD   K  +  + +
Sbjct: 434 KI---------QSFSELKPGDYVVHENHGLG------IYQGIEKIEVDKVAKDYMKISYA 478

Query: 181 RLPVLPEWIEK---DLLQKKSFPSIAEAFNIIHNPR--KAKDFEWTSPARERLAYDELLA 235
           +   L  +I     DL+QK        A      P+  +    EWT   ++     + +A
Sbjct: 479 KGGNL--YIPATQLDLIQKY-------ASADAKKPKLNRLGTQEWTKTKKKVRGAVKEIA 529

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
             +  L   +Q ++  G     +    Q+     PF  T+ Q  AI+ + +DM  +  M 
Sbjct: 530 RDLVALYAARQEQE--GYVYGADTVWQQEFEEMFPFEETEDQLLAIEAVKRDMQSRRIMD 587

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R++ GDVG GKT +A+ A   AV+   Q V + P  ILAQQHY    +  ++  + ++++
Sbjct: 588 RLICGDVGYGKTEIAIRAAFKAVQEDKQVVYLVPTTILAQQHYNTFVQRMRDFPVRIDLM 647

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
                 A ++K  +    G   I+IGTH +  + +++  L L+I+DE+ RFGVQ + K+ 
Sbjct: 648 CRFRTPAQQKKTAQDTKRGLVDIVIGTHRVLSNDMEFKNLGLLIIDEEQRFGVQHKEKIK 707

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           +      VL +TATPIPRTL ++ +G  D+S + E P  R PI+T ++  N  + V E +
Sbjct: 708 KLKENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPNDRMPIQTYVMEYND-EMVREAI 766

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +   S   + Y++  ++E+  E        R   L      S+A  HG+M +   E +M 
Sbjct: 767 ERECSRQGQVYYVYNRVEDIAEIT-----ARIQKLVPEV--SVAFAHGQMKEHQLEKIMY 819

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F NG   +L++TT+IE G+D+ + + +II +A+  GL+QL+QLRGRVGR   ++   LL
Sbjct: 820 DFINGEIDVLVSTTIIETGLDISNVNTMIIHDADRLGLSQLYQLRGRVGRSNRMAYAFLL 879

Query: 596 Y--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
           Y     L + +  RL+ ++   D   GF IA  DL+ R  G +LG +Q G  + +     
Sbjct: 880 YRRDKMLKEVAEKRLAAIREFTDLGSGFKIAMRDLEIRGAGNLLGAQQHGHMEAVGYD-- 937

Query: 651 LHDSLLEIARK 661
           L+  +L  A K
Sbjct: 938 LYCKMLNEAVK 948


>gi|206889345|ref|YP_002248930.1| transcription-repair coupling factor [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741283|gb|ACI20340.1| transcription-repair coupling factor [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 1042

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 134/461 (29%), Positives = 233/461 (50%), Gaps = 18/461 (3%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPF 271
              D   ++  ++    +      IA  L++   Q K E G   + + +I +      P+
Sbjct: 439 PPIDKLGSNRWQKAKERERKRIHDIADKLIKLYAQRKTERGFIYSEDTEIHKNFDDFFPY 498

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q+ AI  IL+ M +   M  +L GD G GKT VA+ A   AV  G Q  ++ P  
Sbjct: 499 EETEDQQKAIDAILKKMREPFPMEVLLCGDAGYGKTEVAMRASFRAVYDGKQVAVLVPTT 558

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +L +QHY   KK  +   + +E ++    +   +K +E    G+  I+IGTH +    + 
Sbjct: 559 LLCEQHYRTFKKRFEAFPVKIEYLSRFRSEKEIKKVIEDTKLGKVDILIGTHIIILKEVD 618

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           ++ L L+I+DE+ +FGV  + K+ +K     ++ +TATPIPRTL +   G  DI  I   
Sbjct: 619 FFDLGLLIIDEEQKFGVIHKEKIKEKYPKVDLITITATPIPRTLQIGLSGLWDIFVIQTP 678

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R  +KT +I  N +  + E ++  +  G + Y++  +I + +    +        L 
Sbjct: 679 PKERLAVKTFVIQENEL-IIKEAIEKEIQRGGQIYFLHNRIHDIELVKSK-----IQKLV 732

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               + I + HGRM +   + +M  F  G   +L+ T++I  G+D+ + + III+ A+ F
Sbjct: 733 P--MARIGVAHGRMKEKMLDKIMLDFIYGKIDILLCTSIIASGLDIPNVNTIIIDQAQTF 790

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLK 626
           GL+ L+Q+RGRVGR    ++  L+  P   LS+++  R+  ++       GF IA  DL+
Sbjct: 791 GLSDLYQIRGRVGRSYRQANAYLVIPPEEILSEDAKKRIKAIQEMSYLGAGFHIALRDLE 850

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            R  GE+LG++QSG+ +      +L+  +L  A K+ K  +
Sbjct: 851 IRGAGELLGVEQSGVNRL---GFDLYIEMLNEAVKEIKGEV 888


>gi|15644199|ref|NP_229249.1| transcription-repair coupling factor, putative [Thermotoga maritima
           MSB8]
 gi|4982014|gb|AAD36518.1|AE001796_10 transcription-repair coupling factor, putative [Thermotoga maritima
           MSB8]
          Length = 893

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 145/488 (29%), Positives = 260/488 (53%), Gaps = 22/488 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++     E    ++  L M++Q  + + +P   + ++ +K   + P+  T  Q+ 
Sbjct: 321 WKQTLKKVREDIEKKIKELVELYMKRQEAQGLSLP--GDPELEEKFAESFPYIETPDQQQ 378

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           +I+++L D++ +  M R+L GD G GKT VAL A   AV +G Q  ++ P  +LA+QHYE
Sbjct: 379 SIEEVLSDLASEKPMDRLLCGDAGVGKTEVALRAAFRAVASGKQVAVLVPTTVLARQHYE 438

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  +   + VE++  +     +++ +E++  G+  IIIGTH+L  + I++  L LVI
Sbjct: 439 NFKERMEPFGVKVELLDSSRTAREKKEIIEKLKKGEIDIIIGTHSLLNERIEFSDLGLVI 498

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV+Q+ +  +   + +VL ++ATPIPRTL +   G  D S I   P GRKP+ 
Sbjct: 499 IDEEQKFGVEQKERFKKLRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVY 558

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
             +   +  D V   +   ++ G +  ++  ++EE          E F  L   F    I
Sbjct: 559 VYVAEYSD-DLVKGAVIREINRGGQVIYVHNRVEEL--------PEVFEKLKRMFPELEI 609

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+ HG+MS    E ++  F  G   +L+ TT+IE G+D+ +A+ +I+++A+ +GL+QL+Q
Sbjct: 610 AVAHGKMSRKTMERIVHEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAQRYGLSQLYQ 669

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
           LRGRVGR +  +    LY     +++  RL VLK+      G  IA +D++ R  G++LG
Sbjct: 670 LRGRVGRSDRRAFAYFLYPKGTPRSALERLKVLKSYTGFGSGLQIALKDMELRGVGDVLG 729

Query: 636 IKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQDP---DLTSVRGQSIRILLYLYQY 690
           ++Q G    +    +L++ +L+  I R   + I  +     ++ +  G+      Y+   
Sbjct: 730 LEQHG--NVVSVGLKLYNEILKETITRFKERRIEKKHSVNVEIENPPGRFFIPEDYVQNP 787

Query: 691 NEAFQFIR 698
            E  +  R
Sbjct: 788 VERLRLYR 795


>gi|239906714|ref|YP_002953455.1| transcription-repair coupling factor [Desulfovibrio magneticus RS-1]
 gi|239796580|dbj|BAH75569.1| transcription-repair coupling factor [Desulfovibrio magneticus RS-1]
          Length = 1148

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 137/486 (28%), Positives = 230/486 (47%), Gaps = 17/486 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W S         E +A  +  +   +Q     G       ++  +      F  T  QE 
Sbjct: 554  WKSVRERAKKAVERIAADLVEMYAYRQVA--KGYAYGPTNELYLEFEATFGFEETPDQER 611

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI ++L DM +   M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QHY+
Sbjct: 612  AIGEVLADMERPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVAMLCPTTVLAEQHYQ 671

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  +   + VE+++  +    R+  LE ++ G+  I++GTH +    +    + L+I
Sbjct: 672  NFAARLEGFPVRVEMLSRFVSPKRRKVVLEAVSRGEVDILVGTHRILSSDVAIPNIGLLI 731

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV+ + +L         L +TATPIPRTL L+  G   +S I   P  RK + 
Sbjct: 732  LDEEQRFGVKHKERLKAFKKNIDALTLTATPIPRTLQLSLSGVRGLSVIETPPPDRKTVD 791

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  +    + E L+  L    + +W+  +++  ++           +L     + +A
Sbjct: 792  TALVERDE-GFLREVLRRELDRQGQVFWVHNRVQGLEDVT-----AYVKTLAPG--AKVA 843

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+MS+   E  M  F +G   +L+ T++IE G+D   A+ +I++NA  FGL QL+QL
Sbjct: 844  MAHGQMSETALEEAMHGFWHGETDILVCTSIIESGLDFPRANTLIVDNAHMFGLGQLYQL 903

Query: 580  RGRVGRGEEISSCILLYH-----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR    +    +       P L++     +  +     GF +A EDL+ R  G IL
Sbjct: 904  RGRVGRSPRQAYAYFVVPSIEKVPELARKRLRVILDMDYLGAGFQVAMEDLRLRGAGNIL 963

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI-LLYLYQYNEA 693
            G  QSG    +     L + L E  R+     + +  +     G + RI   Y+ + ++ 
Sbjct: 964  GEAQSGHIARIGLDMFL-EMLAEEVRRLKGEPIKERIETELTLGIAARIPERYVPEASDR 1022

Query: 694  FQFIRA 699
             +  +A
Sbjct: 1023 LRLYKA 1028


>gi|229817916|ref|ZP_04448198.1| hypothetical protein BIFANG_03203 [Bifidobacterium angulatum DSM
            20098]
 gi|229784520|gb|EEP20634.1| hypothetical protein BIFANG_03203 [Bifidobacterium angulatum DSM
            20098]
          Length = 1198

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 234/452 (51%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 596  DWAATKAKARKHVREIADDLVKLYSARQR--TPGFAFSADTPWQKELEDAFPYQETADQL 653

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQHY
Sbjct: 654  TTIDDVKADMEKPRPMDRLICGDVGFGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHY 713

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++        ++ +E +A G   ++IGTH L    I++  L LV
Sbjct: 714  ETFTERYEGFPVNVAAMSRFQKPKEIKQTIEDLAAGTVDVVIGTHKLLNPKIKFKDLGLV 773

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 774  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 833

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  ++E     +  SV ++ ++L     S +
Sbjct: 834  LTYVGAYED-AQVTAAVRRELLRGGQVFYLHNRVE-----DIASVADKIHNLVPE--SHV 885

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 886  GIAHGKMGEKQLDQVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 945

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 946  LRGRVGRGRERAYAYFLYDPSKPMTQQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 1005

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 1006 LGDQQSGHIE--GVGFDLYVRMVSEAVEAYKE 1035


>gi|153807964|ref|ZP_01960632.1| hypothetical protein BACCAC_02250 [Bacteroides caccae ATCC 43185]
 gi|149129573|gb|EDM20787.1| hypothetical protein BACCAC_02250 [Bacteroides caccae ATCC 43185]
          Length = 1141

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 142/465 (30%), Positives = 231/465 (49%), Gaps = 17/465 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 526 WEKLKERTKTKIKDIARDLIKLY--SQRRQEKGFSYSPDSFLQRELEASFIYEDTPDQSK 583

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 584 ATVDVKTDMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 643

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++  +     VE ++     A  +  L+ +  G   I+IGTH +    +++  L L+I
Sbjct: 644 TFRERLKGLPCRVEYLSRARTAAQAKAVLKELKEGDVGILIGTHRILGKDVRFKDLGLLI 703

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+  P  R PI+
Sbjct: 704 VDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQ 763

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + + +   +S   + +++  +I    E   ++++ER           +A
Sbjct: 764 TEVHTFNE-EVITDAINFEMSRNGQVFFVNNRIANLPE--LKAMIERH-----IPDCRVA 815

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 816 IGHGQMEPAELEKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 875

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+     RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 876 RGRVGRSNKKAFCYLLAPPLSSLTAEGRRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLL 935

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQ 679
           G +QSG    L    E +  +L  A  + K+    D     ++G+
Sbjct: 936 GAEQSGFIADL--GYETYQKILSEAVHELKNDEFADLYADEIKGE 978


>gi|301163896|emb|CBW23451.1| putative transcription-repair coupling factor [Bacteroides fragilis
           638R]
          Length = 1125

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 155/580 (26%), Positives = 253/580 (43%), Gaps = 34/580 (5%)

Query: 94  LNDGTGEITLLFFYRKT---EMLKNVFFEGRKITVTGKIKKLKNRIIMVHP-HYIFHNSQ 149
             D T  + L FF          K      +    +GK+      +    P  Y+ H   
Sbjct: 391 FADDT--LKLCFFTDHQLFDRFHKYNLKSDKAR--SGKVALSLKELNQFTPGDYVVHTDH 446

Query: 150 DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209
            V       +  +P G +     K++ +         + +   +                
Sbjct: 447 GV--GRFSGLVRIPNGDTTQEVMKLVYQN-------EDVVFVSIHSLHKVSKYKGKEGEA 497

Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
               K     W           + +A  +  L    Q ++E G   + +  + +++  + 
Sbjct: 498 PRLNKLGTGAWEKLKERTKTKIKDIARDLIKLY--SQRREEKGFAYSPDSFLQRELEASF 555

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
            +  T  Q  A  D+ QDM +   M R++ GDVG GKT VA+ A   AV    Q  ++ P
Sbjct: 556 IYEDTPDQSKATADVKQDMERDMPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVP 615

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +LA QH++  +   +     VE ++     A  +  ++ +  G  +I+IGTH +    
Sbjct: 616 TTVLAYQHFQTFRDRLKGLPCRVEYLSRARTAAQAKAVIKGLEAGDVNILIGTHRILGKD 675

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +++  L L+I+DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+
Sbjct: 676 VKFKDLGLLIIDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSLMGARDLSVIS 735

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R PI+T +   +  + + + +   +S   + + +  +I    E            
Sbjct: 736 TPPPNRYPIQTEVHTFSE-EVIADAINFEMSRNGQVFLVNNRIANLPELKAMI------- 787

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L       IAI HG+M   + E ++  F N    +LIATT+IE GID+ +A+ III  A+
Sbjct: 788 LRHIPDCRIAIGHGQMEPAELEQIIFGFVNYDYDVLIATTIIESGIDIPNANTIIINQAQ 847

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEED 624
           +FGL+ LHQ+RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +D
Sbjct: 848 NFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQD 907

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           L  R  G +LG +QSG    L    E +  +L  A  + K
Sbjct: 908 LDIRGAGNMLGAEQSGFIADL--GYETYQKILSEAVHELK 945


>gi|294674288|ref|YP_003574904.1| transcription-repair coupling factor [Prevotella ruminicola 23]
 gi|294471847|gb|ADE81236.1| transcription-repair coupling factor [Prevotella ruminicola 23]
          Length = 1122

 Score =  333 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 142/459 (30%), Positives = 231/459 (50%), Gaps = 20/459 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W         + + +A  +  L  +++ +   G   + +  +  ++  +  +  T  Q 
Sbjct: 491 QWERLKERTKQHIKEIARDLIKLYAKRRKE--KGFAFSRDSYLQHELEASFLYEDTPDQL 548

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A +D+  DM +   M R++ GDVG GKT VA+ A   A   G Q  ++ P  +LA QH+
Sbjct: 549 KATQDVKADMEKARPMDRLVCGDVGFGKTEVAVRAAFKAAVDGKQVAVLVPTTVLAYQHF 608

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                  ++  + V+ +T         +  + +A G+  IIIGTH L   S+++  L L+
Sbjct: 609 RTFSNRLKDMPVTVDYLTRARTTKDTNRIQKDLAEGKIDIIIGTHRLISKSVKFKDLGLL 668

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ +FGV  + KL Q  T+   L M+ATPIPRTL  + +G  D+S I   P  R PI
Sbjct: 669 IIDEEQKFGVSTKEKLRQMKTSVDTLTMSATPIPRTLQFSLVGARDLSVIQTPPPNRYPI 728

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T I   +  + + E +   +S   + Y++  +I     S+ + + E          + I
Sbjct: 729 QTEIHTFS-PEIIAEAVNYEMSRNGQVYFVNNRI-----SDLQHIAEIIQKYVPD--ARI 780

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I HG+M   + E ++  F N    +L++TT++E GID+ +A+ III  A +FGL+ LHQ
Sbjct: 781 CIGHGQMKPEELEKIILDFSNYDYDILLSTTIVENGIDIPNANTIIINGAHNFGLSDLHQ 840

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           +RGRVGRG   + C LL  P   L+  S  RL  L+N  D   G  IA +DL  R  G +
Sbjct: 841 MRGRVGRGNRKAFCYLLAPPLSALNPESRRRLEALENFSDLGSGINIAMQDLDIRGAGNL 900

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           LG +QSG    L    E +  +L  A  + K    ++P+
Sbjct: 901 LGSEQSGFIADL--GYETYQKILSQAMSELK---NEEPE 934


>gi|225849434|ref|YP_002729599.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase
           mfd) [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643749|gb|ACN98799.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase
           mfd) [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 938

 Score =  333 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 146/482 (30%), Positives = 249/482 (51%), Gaps = 27/482 (5%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  +      + LA Q+  L    + +     P++VEG++  K  R+ P+  T  Q  
Sbjct: 359 WKNLKKRVKESLKNLARQLIKLY--SERQSIKRPPLDVEGQLITKFERDFPYVETPDQLK 416

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK++ +D+S+   M R++ GDVG GKT VA+ +       G Q +++ P  +LA QHY 
Sbjct: 417 AIKEVKKDLSKDRPMERLICGDVGFGKTEVAIRSAFIHAVNGYQTLVLVPTTVLAYQHYV 476

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  +   +IVE ++    ++ + + ++++  G+  +++ TH    D++++  L L+I
Sbjct: 477 KFKERLEKYGLIVENLSRLKTKSQQEEIIKKLEEGKIDVVVATHKALSDNVKFKNLGLLI 536

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV+ + K+ Q   +   L +TATPIPRTL +   G  DIS I   P GR  +K
Sbjct: 537 IDEEHRFGVRAKEKIRQLKKSIDTLYLTATPIPRTLNMALSGLKDISVINTPPEGRYEVK 596

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSI 518
           T + P +  + + + ++  L+   + +++  ++E  +        ER N L   F  + +
Sbjct: 597 TYVSPFDE-NILKKAVEFELNRKGQVFYVHNRVETIE--------ERVNYLKTLFKNAKV 647

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG+M   + E  +  F  G   +L++T++IE GID+  A+ +I+E A+ FGLAQL+ 
Sbjct: 648 DFIHGQMKPSEIEKKILYFIEGKIDILVSTSIIETGIDIPTANTLIVERADLFGLAQLYH 707

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
           LRGRVGRG   + C L     ++K++  RL  +        G  ++ EDL+ R  G ILG
Sbjct: 708 LRGRVGRGNIQAYCYLFIPKEITKDARRRLDAILKLTRPGSGLKVSIEDLQIRGPGNILG 767

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS----------VRGQSIRILL 685
           I+QSG         +++  LL+ A  +        P L            V     R+ L
Sbjct: 768 IEQSGFI--KSVGFDMYVKLLKEALSETSGESEFQPQLDLDFDYYIPQSFVENPQERMNL 825

Query: 686 YL 687
           YL
Sbjct: 826 YL 827


>gi|313900859|ref|ZP_07834349.1| transcription-repair coupling factor [Clostridium sp. HGF2]
 gi|312954279|gb|EFR35957.1| transcription-repair coupling factor [Clostridium sp. HGF2]
          Length = 1151

 Score =  333 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 137/454 (30%), Positives = 233/454 (51%), Gaps = 19/454 (4%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A    LA ++  L       + IG     +  + ++   +  +  T  Q 
Sbjct: 551 EWEKTKKKVSAKIAELADRLVKLYA--SRDENIGHAFAKDTPLQKQFEEDFEYELTPDQA 608

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A+++I QDM     M R+L GDVG GKT VA  A   AV  G Q   + P  IL+ QHY
Sbjct: 609 RAVQEIKQDMESAKPMDRLLCGDVGFGKTEVAARAAFKAVAEGRQVAFLCPTTILSLQHY 668

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +   K  +N  + + ++   +  + ++  +  +  G   I+IGTH L    I +  L L+
Sbjct: 669 KTFMKRFRNFPVNIAVVNRFIKPSDQKHIIHDLKEGNVDILIGTHRLLSKDIVFKDLGLL 728

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV+ + K+ +   +  VL ++ATPIPRTL ++ +G   +S++   P  R P+
Sbjct: 729 VIDEEQRFGVEHKEKIKELKNSVDVLSLSATPIPRTLQMSLIGIRSLSQLETPPMNRMPV 788

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
           +T +I  N    V E ++  L+   + +++   ++E               L +      
Sbjct: 789 QTYVIEKN-FQMVKEIIQRELARNGQVFYLYNNVKEI--------YNVARKLRDAMPEVE 839

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I + HG+M+  D E VM  F +   ++L+ TT+IE GID+ +A+ I+IE+A+HFGL+QL+
Sbjct: 840 IGVAHGQMTREDIEDVMLQFTDNKYQVLVCTTIIETGIDIPNANTILIEDADHFGLSQLY 899

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           Q++GRVGR + ++   L+Y P   LS+ +  RL  +K       G+ IA  DL  R  G+
Sbjct: 900 QIKGRVGRSDRLAYAYLMYSPQKQLSEIAMKRLKSIKEFTQLGSGYKIAMRDLTIRGAGD 959

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           +LG +Q+G         +++  +L  A  + K I
Sbjct: 960 MLGPQQAGFIDT--VGIDMYIEMLNSAIMEKKGI 991


>gi|167753145|ref|ZP_02425272.1| hypothetical protein ALIPUT_01416 [Alistipes putredinis DSM 17216]
 gi|167659459|gb|EDS03589.1| hypothetical protein ALIPUT_01416 [Alistipes putredinis DSM 17216]
          Length = 1110

 Score =  333 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 134/450 (29%), Positives = 226/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + ++ ++  L  ++  K   G   + +  + Q++  +  +  T  Q++
Sbjct: 503 WQKLKTATKKAVKDISRELIALYAKR--KASKGFAFSPDTYLQQELEASFMWEDTPDQQT 560

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A + + +DM     M R++ GDVG GKT VA+ A   A   G Q  ++ P  ILA QHY 
Sbjct: 561 ATQAVKRDMESNQPMDRLICGDVGFGKTEVAIRAAFKAATDGKQVAVLVPTTILALQHYR 620

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                 ++  + VE +          + L  +A G+  I+IGTH +    ++++ L L+I
Sbjct: 621 SFVHRLRDFPVKVEYLNRTKSSKETSRILSELAEGRIDILIGTHKILGKQVKFHDLGLLI 680

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KLTQ +     L +TATPIPRTL  + +G  D+S I+  P  R+PI 
Sbjct: 681 IDEEQKFGVAAKEKLTQMSVNVDTLTLTATPIPRTLQFSLMGSRDLSVISTPPPNRQPII 740

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T     +  + + + +   L  G + Y++  ++E+               L     + + 
Sbjct: 741 TESHLFSE-EIIRDAVNAELDRGGQVYFVHNRVEDLMTLQG-----MVTRLCPR--ARVG 792

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M     E ++  F  G   +LI+TT++E GID+ +A+ II+ NA++FGL+ LHQL
Sbjct: 793 IGHGKMPAEQLEKLIMDFIYGEFDVLISTTIVENGIDIPNANTIIVNNAQNFGLSDLHQL 852

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGRG +   C LL      L+ ++  RL  ++   D   GF IA +DL  R  G +L
Sbjct: 853 RGRVGRGSQRGYCYLLSPGDELLTPDARRRLRAIEEFSDLGSGFNIAMQDLDIRGAGNLL 912

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    +    E +  +++ A  + +
Sbjct: 913 GAEQSGFIADI--GFETYQKIMQEAIAELR 940


>gi|304391611|ref|ZP_07373553.1| transcription-repair coupling factor [Ahrensia sp. R2A130]
 gi|303295840|gb|EFL90198.1| transcription-repair coupling factor [Ahrensia sp. R2A130]
          Length = 1169

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 144/452 (31%), Positives = 232/452 (51%), Gaps = 19/452 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W +   +       +AGQ+  +   +Q KK    PI +   +  +     P+  T  Q +
Sbjct: 574  WQARKAKLKKRILEMAGQLIAIAAARQLKKAD--PIQLPDGVYGEFAAKFPYEETDDQLN 631

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +  D++    M R++ GDVG GKT VAL A      +G Q  ++ P  +L++QH +
Sbjct: 632  AIDSVFADLASGQPMDRLVCGDVGFGKTEVALRAAFLTAMSGKQVAVVVPTTLLSRQHMK 691

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +      I +   +  +       A      G A IIIGTHAL   SI++ +L L+I
Sbjct: 692  TFTERFHGLPIKIVQASRLVGSKDLSAAKAAAKDGTADIIIGTHALLGKSIEFKRLGLLI 751

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+  FGV+ + +L +     HVL ++ATPIPRTL L   G  ++S IT  P  R  ++
Sbjct: 752  IDEEQHFGVKHKERLKELKADVHVLTLSATPIPRTLQLALTGVRELSLITTAPVDRMAVR 811

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T ++P + +  V E L      G +++++CP++ + +         R   L EH     +
Sbjct: 812  TFVMPFDGV-VVREALLRERYRGGQSFYVCPRLADIRG--------REEWLAEHVPELKV 862

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M   + E VM++F  G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+Q
Sbjct: 863  AVAHGQMPPGELEDVMNAFYEGRYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQ 922

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            +RGRVGR +  +  +L   P   L+  +  RL VL++ +    GF +A  DL  R  G I
Sbjct: 923  MRGRVGRSKTRAYALLTLPPKKVLTATAQRRLKVLQSLDTLGAGFQLASHDLDIRGAGNI 982

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG         EL+  +LE A  + K 
Sbjct: 983  LGDEQSGH--VREVGYELYQQMLEEAVAELKE 1012


>gi|313891693|ref|ZP_07825300.1| transcription-repair coupling factor [Dialister microaerophilus
           UPII 345-E]
 gi|313119971|gb|EFR43156.1| transcription-repair coupling factor [Dialister microaerophilus
           UPII 345-E]
          Length = 1126

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 131/446 (29%), Positives = 222/446 (49%), Gaps = 16/446 (3%)

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W     +     + LA ++  L +  + +   GI    +     +      +  T  Q
Sbjct: 524 IQWERIRNKAKKSIKELAEKL--LKVYAERQLAKGISFLPDSSEQIEFEDAFEYVETPDQ 581

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            SA + I + M     M  +L GDVG GKT VA+ A+   V +G Q++++ P  +LA QH
Sbjct: 582 LSATEKIKKSMESSTPMDMLLCGDVGFGKTEVAMRAVFKCVMSGYQSIVLCPTTVLASQH 641

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           ++   +      + V+++   +  + + K L  +  GQ  ++IGTH++   SI   KL L
Sbjct: 642 FKTFSERMNKFGVNVQLLNRFIKTSEKNKILSGLKSGQIDVLIGTHSVLSKSINCKKLGL 701

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           ++VDE+ RFGV Q+ K     +   +L ++ATPIPRTL ++  G  D++ IT+ P  R  
Sbjct: 702 LVVDEEQRFGVFQKEKWKSLTSGIDILTLSATPIPRTLHMSLSGVRDMAAITQAPQNRHA 761

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           ++T +I  N  D V E +        + Y++  +IE         + +R   + +     
Sbjct: 762 VQTYVIEYNE-DIVKEAVLREKERNGQVYFVYNRIESID-----MMKDRLEKIFKG-KVR 814

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I + +GRM   + E VM  F      LL+ TT+IE G+D  +A+ III +A+  GL+QL+
Sbjct: 815 IGVAYGRMKGSELEKVMFDFYQDKYDLLLCTTLIENGLDQPNANTIIIYDADFMGLSQLY 874

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           Q++GRVGR ++I+     Y     LS+ +  RL+ ++       GF IA  DL+ R  G 
Sbjct: 875 QMKGRVGRSDKIAKAYFFYRKDKVLSEVAEKRLNTIREFTELGSGFKIAMRDLEIRGAGN 934

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEI 658
           +LG +Q G    +      + ++LE 
Sbjct: 935 LLGSEQHGNIYSIGFS--TYCNMLEE 958


>gi|189466485|ref|ZP_03015270.1| hypothetical protein BACINT_02860 [Bacteroides intestinalis DSM
           17393]
 gi|189434749|gb|EDV03734.1| hypothetical protein BACINT_02860 [Bacteroides intestinalis DSM
           17393]
          Length = 1131

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 145/450 (32%), Positives = 229/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q ++E G   +V+  + +++  +  +  T  Q  
Sbjct: 514 WEKLKERTKTKIKDIARDLIKLY--SQRREEKGFQFSVDSFLQRELEASFIYEDTPDQSK 571

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 572 ATADVKADMESNRPMDRLVCGDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQ 631

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  ++    VE ++     A  +  ++ +A G  +I+IGTH +    IQ+  L L+I
Sbjct: 632 TFKERLKDLPCRVEYLSRARTAAQAKAVVKGLAAGDVNILIGTHRILGKDIQFKDLGLLI 691

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 692 IDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 751

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + +++ +   +S   + + +  +I    E   ++++ER           IA
Sbjct: 752 TEVHTFNE-EVIVDAINFEMSRNGQVFLVNNRISNLPE--LKAMIERH-----IPDCRIA 803

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +LIATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 804 IGHGQMEPTELEKIIFGFVNYDYDVLIATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 863

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 864 RGRVGRSNKKAFCYLLAPPLSSLTPEARRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 923

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 924 GAEQSGFIADL--GYETYQKILSEAVHELK 951


>gi|285018831|ref|YP_003376542.1| transcription-repair coupling factor protein [Xanthomonas albilineans
            GPE PC73]
 gi|283474049|emb|CBA16550.1| probable transcription-repair coupling factor protein [Xanthomonas
            albilineans]
          Length = 1166

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 152/501 (30%), Positives = 249/501 (49%), Gaps = 21/501 (4%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
            + +    S     +    P       +W    R+       +A ++  +  R+Q +   G
Sbjct: 543  VAQLHLISRYSGASAETAPLHSLGGEQWAKAKRKAAEKVRDVAAELLEIQARRQAR--AG 600

Query: 253  IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            + + V+  + +      PF  T  Q +AI+  L+D++    M R++ GDVG GKT VA+ 
Sbjct: 601  LALQVDRAMYEPFAAGFPFEETPDQLAAIEATLRDLASSQPMDRVVCGDVGFGKTEVAVR 660

Query: 313  AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            A  AA  AG Q  ++ P  +LA+QHY   +    +  + VE+++        +  LE++A
Sbjct: 661  AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPLKVEVLSRFKSTKEIKAELEKVA 720

Query: 373  HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             G   +I+GTH L Q  +++  L LVIVDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 721  AGTIDVIVGTHRLLQADVRFKDLGLVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIP 780

Query: 433  RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            RTL +   G  D+S I   P  R  ++T +   +    + E  +  L+ G + Y++   +
Sbjct: 781  RTLNMAMAGLRDLSIIATPPLNRLAVQTFVTQWDN-ALLREAFQRELARGGQLYFLHNDV 839

Query: 493  EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            E         +    + L     + I I HG+M + + E+VM  F+     +L++TT+IE
Sbjct: 840  ESIG-----RMQRELSVLVPE--ARIGIAHGQMPERELETVMLDFQKQRFNVLLSTTIIE 892

Query: 553  VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
             GID+ +A+ I+I  A+ FGLAQLHQLRGRVGR    +   LL      ++ ++  RL  
Sbjct: 893  SGIDIPNANTIVINRADRFGLAQLHQLRGRVGRSHHRAYAYLLVPDQRSITADAQKRLDA 952

Query: 611  LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  +   
Sbjct: 953  IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIRQ-- 1008

Query: 668  TQDPDLTSVRG-QSIRILLYL 687
             + PDL S    +   + L++
Sbjct: 1009 GKLPDLDSGENTRGAEVELHV 1029


>gi|189500626|ref|YP_001960096.1| transcription-repair coupling factor [Chlorobium phaeobacteroides
           BS1]
 gi|189496067|gb|ACE04615.1| transcription-repair coupling factor [Chlorobium phaeobacteroides
           BS1]
          Length = 1107

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 135/429 (31%), Positives = 219/429 (51%), Gaps = 15/429 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           + +  + K   G     +    ++   +  F  T  Q   I+ +  DM   + M R++ G
Sbjct: 510 IRLYAKRKMTTGFAFRTDSIFQKEFEASFIFDETPDQLKTIEQVKNDMQSGSPMDRLICG 569

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           D G GKT +A+ A   AVE+  Q  ++ P  ILA QH E  ++  +N  + + +++  + 
Sbjct: 570 DAGFGKTEIAMRASFKAVESNKQVALLTPTTILAHQHAETFRRRFENVPLNIAVLSRFVT 629

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           +  ++  +E+I+ G   I+IGTH L    + +  L L+I+DE+  FGV  + KL Q    
Sbjct: 630 KKEQKNLIEKISRGLIDIVIGTHRLVSKDVVFQDLGLLIIDEEQHFGVSTKEKLRQSFPG 689

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              L M+ATPIPRTL  + LG  D+S ++  P  R+P++TVI   N  D +   ++  +S
Sbjct: 690 VDTLTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQPVETVITQFN-PDTIRSAIQHEIS 748

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
              + +++  +I     +    +      L     + I I HG+M   + E+VM  F + 
Sbjct: 749 RRGQVFFLHNRI-----AGLDQIRNTLQELAPE--ARIGIAHGQMPTSELENVMMEFISH 801

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-- 598
              LLI+T++I  G+D+ +A+ III  A+ FGL+ L+QLRGRVGR E  +   L+  P  
Sbjct: 802 KLDLLISTSIIGSGLDISNANTIIINRADMFGLSDLYQLRGRVGRSERKAYSYLIIPPVH 861

Query: 599 PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
            L + +  RL+V++       GF IA  DL  R  G +LG +QSG    L     L+  L
Sbjct: 862 TLKREAMERLAVIESFTELGSGFNIALRDLDIRGAGNLLGAEQSGAIHELGFD--LYQKL 919

Query: 656 LEIARKDAK 664
           LE A  + K
Sbjct: 920 LEEAVTELK 928


>gi|213692705|ref|YP_002323291.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            infantis ATCC 15697]
 gi|213524166|gb|ACJ52913.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            infantis ATCC 15697]
 gi|320458861|dbj|BAJ69482.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            infantis ATCC 15697]
          Length = 1194

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 230/452 (50%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRA--KGFAFSPDTPWQKELEDAFPYQETADQL 644

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQHY
Sbjct: 645  TTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHY 704

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++           +E +  G   ++IGTH L    I +  L LV
Sbjct: 705  ETFSERFEGFPVNVAAMSRFQTTKEINGTVEGLRSGTVDVVIGTHKLLNPKITFKDLGLV 764

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 765  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 824

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  +++     +  S+ ++ ++L     + +
Sbjct: 825  LTYVGAYED-AQVTAAVRRELLRGGQVFYVHNRVQ-----DIASIADKIHTLVPE--AHV 876

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 877  GIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 936

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 937  LRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 996

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 997  LGDEQSGHIE--GVGFDLYVRMVSEAVEKYKE 1026


>gi|307942228|ref|ZP_07657579.1| transcription-repair coupling factor [Roseibium sp. TrichSKD4]
 gi|307774514|gb|EFO33724.1| transcription-repair coupling factor [Roseibium sp. TrichSKD4]
          Length = 1162

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 138/455 (30%), Positives = 229/455 (50%), Gaps = 19/455 (4%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIP 270
               D       + R A  +    +IA  L++    + +     VE       +     P
Sbjct: 554 DSQLDKLGGGAWQARKAKLKKRILEIADGLIKTAAARALKTAPVVETPEGVYDEFASRFP 613

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           +  T  Q +AI  +  D++    M R++ GDVG GKT VAL A   A  +G Q  ++ P 
Sbjct: 614 YDETDDQLTAIDSVFDDLASGRPMERLVCGDVGFGKTEVALRAAFIAAMSGRQVAVVVPT 673

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            +L++QH++   +      I V   +  +P     K  + +A G   I++GTHAL   ++
Sbjct: 674 TLLSRQHFKTFSERFHGLPINVAHASRLVPTRELTKTKKGVADGTVDIVVGTHALLGKTV 733

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           Q+  L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S I  
Sbjct: 734 QFRDLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLIAT 793

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R  ++T + P + +  V E L      G +++++CP++ +          +R   L
Sbjct: 794 PPVDRLAVRTFVSPFDPL-VVREALLREHYRGGQSFYVCPRLADLA--------DRKQFL 844

Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
            E      +A+ HG+M   + E VM++F  G   +L++TT++E G+D+  A+ +I+  A+
Sbjct: 845 EEQVPELKVAVAHGQMPPSELEDVMNAFYEGKYNVLLSTTIVESGLDIPTANTLIVHRAD 904

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEED 624
            FGL+QL+QLRGRVGR +  +  +     +  L+  +  RL VL++ E    GF +A  D
Sbjct: 905 MFGLSQLYQLRGRVGRSKTRAYALFTVPANKKLTVTAERRLKVLQSLETLGAGFQLASHD 964

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L  R  G +LG +QSG         EL+  +LE A
Sbjct: 965 LDIRGAGNLLGEEQSGH--VKEVGFELYQQMLEEA 997


>gi|288799748|ref|ZP_06405207.1| transcription-repair coupling factor [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332996|gb|EFC71475.1| transcription-repair coupling factor [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 1147

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 220/450 (48%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L  ++  + E G   +V+  +  ++  +  +  T  Q  
Sbjct: 536 WERIKERTKKRIKDIARDLIKLYAKR--RHEKGFAFSVDSFLQHELEASFLYEDTPDQLK 593

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +++  DM     M R++ GDVG GKT VA+ A   A     Q  ++ P  +LA QH++
Sbjct: 594 ATQEVKADMESGRPMDRLVCGDVGFGKTEVAIRAAFKAACDNKQVAVLVPTTVLAYQHFQ 653

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                 +   + V+ ++        ++ L  +  G   I+IGTH L   +++++ L L+I
Sbjct: 654 SFSSRLKGLPVKVDYLSRARTAKQTKQVLTDLEKGDLSILIGTHKLISKAVKWHDLGLLI 713

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL    T    L M+ATPIPRTL  + +G  D+S I   P  R PI 
Sbjct: 714 IDEEQKFGVSVKEKLRTIKTNVDTLTMSATPIPRTLQFSLMGARDMSIIRTPPPNRYPIH 773

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +  D + + +   +S   + Y++  +I   +E +          L       +A
Sbjct: 774 TELSEFSS-DVIRDAINFEMSRNGQVYFVNDRISNLQELSNLI-------LKYIPDCRLA 825

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HGRM   + E ++  F N    +L++TT+IE GID+ +A+ III +A  FGL+ LHQ+
Sbjct: 826 IGHGRMQPEELEQIIMGFMNHDYDVLLSTTIIESGIDISNANTIIINDAHRFGLSDLHQM 885

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR    + C LL  P   L +++  RL  L+       GF ++ +DL  R  G +L
Sbjct: 886 RGRVGRSNRKAFCYLLAPPKSLLKQDARRRLEALETFSELGSGFSLSMQDLDIRGAGNLL 945

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG  + L    E +  +L  A  + K
Sbjct: 946 GSEQSGFIEDL--GYETYQKILTQAVTELK 973


>gi|317495443|ref|ZP_07953812.1| transcription-repair coupling factor [Gemella moribillum M424]
 gi|316914502|gb|EFV35979.1| transcription-repair coupling factor [Gemella moribillum M424]
          Length = 1185

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 149/455 (32%), Positives = 239/455 (52%), Gaps = 19/455 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +     E ++  +  L ++++     G   + +  + Q+   +  F PT  Q  
Sbjct: 556 WQQVKNKVRREIEDISEDLIKLYIKREL--SSGYAYSFDSSLQQEFEDDFSFIPTDDQLK 613

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A ++I +DM ++  M R+L GDVG GKT VA+     AV    Q  ++ P  +LA+QHYE
Sbjct: 614 ATEEIKRDMEKQRPMDRLLCGDVGFGKTEVAMRVAFKAVMDVKQVAVLVPTTLLAEQHYE 673

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  N  + +E+++         +  +R+  G+  IIIGTH L  D  +Y  L L+I
Sbjct: 674 NFVNRFANFPVNIEVVSRFKSAKDITEICKRLREGKIDIIIGTHKLLNDKFKYKDLGLLI 733

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+ + K+        VL ++ATPIPRTL ++ +G  D+S I   P+ R+PI+
Sbjct: 734 IDEEQRFGVKHKEKIKHLKNTIDVLTLSATPIPRTLHMSLIGIRDLSVIETPPSERQPIQ 793

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T +   N +  V E +   +S G + +++  +++        S+ E++  L       +I
Sbjct: 794 TFVTAQNNM-IVKEAIMNEVSRGGQVFYVYNRVD--------SIDEKYLELKRLLPDINI 844

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HGRM+  + ES+M    +    LLI TT+IE GID+ + + +I+E+A+ FGL+QL+Q
Sbjct: 845 AYAHGRMTQRELESIMSDVIDRKYDLLITTTIIETGIDISNVNTLIVEDADRFGLSQLYQ 904

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGR    +   L+Y P   L++NS  RLS +KN      GF IA +DL  R  G++
Sbjct: 905 LRGRVGRSSREAYAYLMYQPFKALTENSEKRLSAIKNFTTLGSGFKIAMQDLSIRGAGDV 964

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           LG +Q G          L+  +LE   +  K IL 
Sbjct: 965 LGGRQHGFID--SVGYTLYSQMLEQEIQMKKGILE 997


>gi|85373850|ref|YP_457912.1| transcription-repair coupling factor [Erythrobacter litoralis
            HTCC2594]
 gi|84786933|gb|ABC63115.1| transcription-repair coupling factor [Erythrobacter litoralis
            HTCC2594]
          Length = 1162

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 157/497 (31%), Positives = 244/497 (49%), Gaps = 32/497 (6%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKK 249
            D+L +    S  EA  +        D       + R A       +IA  LM+   Q   
Sbjct: 534  DVLSRYG--SSEEAVML--------DKLGGEAWQRRRAQLRERIREIAGELMKTAAQRAL 583

Query: 250  EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
            +    +  E  +  + +   P+  T  QE+AI D+L+D+     M R++ GDVG GKT V
Sbjct: 584  KKAPVLEAEDSVFNQFVEKFPWEETDDQEAAIADVLRDLESGRPMDRLVCGDVGFGKTEV 643

Query: 310  ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            AL A   A   G Q  ++AP  +LA+QHY+   +      + +  ++  +P     +  E
Sbjct: 644  ALRAAFVAAMNGQQVAVVAPTTLLARQHYQNFSERFAGFPLKIGRLSRLVPSGEMSETRE 703

Query: 370  RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             +A G   I++GTHA+   S ++  L LVIVDE+ RFGV  + KL Q     H+L +TAT
Sbjct: 704  GLAKGDVDIVVGTHAILSKSTEFKNLGLVIVDEEQRFGVTHKEKLKQLRADVHMLTLTAT 763

Query: 430  PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            PIPRTL +   G  ++S I   P  R  ++T ++  + +  + E L      G +++ + 
Sbjct: 764  PIPRTLQMAMTGLRELSTIQTPPVDRLAVRTYVMEWDDM-VMREALLREHHRGGQSFIVV 822

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            P+I + +             L ++         HG+M   + E  M +F  G  ++L++T
Sbjct: 823  PRIADMESVE--------EWLRDNVPEVKAVTAHGQMGAAEIEKRMSAFYEGKYEVLLST 874

Query: 549  TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYT 606
            T++E G+D+  A+ III  A+ FGLAQL+QLRGRVGR +  +   L Y     LS+ +  
Sbjct: 875  TIVESGLDLPSANTIIIHRADIFGLAQLYQLRGRVGRAKLRAYAYLTYAVDTQLSEVAEK 934

Query: 607  RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
            RL VL + +    GF +A  DL  R  G +LG +QSG         EL+ S+LE A   A
Sbjct: 935  RLKVLGDLDSLGAGFQLASHDLDIRGAGNLLGDEQSGHI--REVGFELYQSMLEDAIMAA 992

Query: 664  K---HILTQDPDLTSVR 677
            K     L++D D  S +
Sbjct: 993  KAGEAGLSEDRDALSPQ 1009


>gi|254440320|ref|ZP_05053814.1| transcription-repair coupling factor [Octadecabacter antarcticus 307]
 gi|198255766|gb|EDY80080.1| transcription-repair coupling factor [Octadecabacter antarcticus 307]
          Length = 1177

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 142/449 (31%), Positives = 230/449 (51%), Gaps = 17/449 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + + A  +    ++A  L+R   + +      +     + ++ L   P++ T
Sbjct: 568  DKLGGGAWQAKKAKLKERIREMAERLIRVAAERELRTAPELTPPEDMWEQFLARFPYAET 627

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q SAI+D+L D+     M R++ GDVG GKT VA+ A   A  +G Q  I+AP  +LA
Sbjct: 628  DDQLSAIEDVLDDLGSGKPMDRLVCGDVGFGKTEVAIRAAFVAAMSGVQVAIVAPTTLLA 687

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QHY+   +  +   I V  ++  +         + +A G   I+IGTHAL   SI++  
Sbjct: 688  RQHYKGFAERFRGFPINVRTLSRFVSAKEAALTKDGMAKGTVDIVIGTHALLAKSIRFKD 747

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+++DE+  FGVQ + +L Q  T  HVL +TATPIPRTL L+  G  ++S I   P  
Sbjct: 748  LGLLVIDEEQHFGVQHKERLKQMRTDIHVLTLTATPIPRTLQLSLSGVRELSIIGTPPVD 807

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  I+T +   + +  + E L      G +++++ P++ +  E       E         
Sbjct: 808  RLAIRTYVSEFDTV-TIREALLREHYRGGQSFFVVPRVSDLSEIEAFIRDE-------IP 859

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              S     G+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +I+  A+ FGLA
Sbjct: 860  EVSFVTASGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIVHRADMFGLA 919

Query: 575  QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRK 629
            QL+Q+RGRVGR +  +   L Y P   L+  +  RL VL +      GF +A +DL  R 
Sbjct: 920  QLYQIRGRVGRSKARAYAYLTYKPRQKLTPQAEKRLRVLGSIDTLGAGFTLASQDLDIRG 979

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             G +LG +QSG         EL+ S+LE 
Sbjct: 980  AGNLLGEEQSGQM--REVGYELYQSMLEE 1006


>gi|313886626|ref|ZP_07820338.1| transcription-repair coupling factor [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923922|gb|EFR34719.1| transcription-repair coupling factor [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 1115

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 132/477 (27%), Positives = 234/477 (49%), Gaps = 16/477 (3%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P+ +K         +  A  ++ +    L+ +    K++ G   + +  +  ++  +  +
Sbjct: 489 PQLSKLGTGAWTKLKERAKTKIKSIARDLIALYAARKEQPGFAFSPDSYLQHEMEASFAY 548

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q  AI+ I  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  
Sbjct: 549 EETPDQLKAIEQIKADMESNRPMDRLVCGDVGFGKTEVAIRAAFKAVADSKQVAVLVPTT 608

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA QHY+   +  +     +E ++        +  L+ +A G+  I+IGTH L    + 
Sbjct: 609 ILAYQHYQTFSQRLEGLPCRIEYLSRAKSDKQSKAILKDLADGRVDILIGTHRLLGKEVT 668

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+I+DE+ +FGV+ + +L +       L ++ATPIPRTL  + +G  D+S I   
Sbjct: 669 FKSLGLLIIDEEQKFGVKAKEQLRKLQVNVDTLTLSATPIPRTLQFSLMGARDLSNINTP 728

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R+P+ T +I  ++ + + + +   L+   + +++  +IE       +          
Sbjct: 729 PRNRQPVTTRLIRWSQ-ETIADAIGYELARHGQVFFVHNRIESIHGVAGQIE-------E 780

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 IAI HGR++  + E ++  F      LL+ATT+IE GID+ + + I+I +A  +
Sbjct: 781 CVPGIRIAIAHGRLTPSETEQILLDFAERKYDLLLATTIIENGIDMPNVNTILINSAHRY 840

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
           GL+ LHQLRGRVGRG + + C L+  P   L++ +  R+  +++  D   G  IA +DL 
Sbjct: 841 GLSDLHQLRGRVGRGSQRAYCYLITPPLGTLTEAAARRVKAIESFSDLGSGMRIALQDLD 900

Query: 627 QRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
            R  G ILG +QSG      F   +    +++ E+ ++D   +     +  +  G +
Sbjct: 901 IRGAGNILGTEQSGFIADLGFETYRKVFEEAVREVKQEDFAALFAAQTEQQAELGNA 957


>gi|206603476|gb|EDZ39956.1| Transcription-repair coupling factor [Leptospirillum sp. Group II
            '5-way CG']
          Length = 1154

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 139/493 (28%), Positives = 240/493 (48%), Gaps = 31/493 (6%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++     E ++  +  L  R+  K   G   + +  + ++   + P+  T  QE 
Sbjct: 554  WNRTRQKVRKEIEKISQDLVDLYARR--KTVSGHSFSSDLLLVREFENSFPYDLTPDQED 611

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            A + + +DM     M R++ GDVG GKT +A+ A   AV  G Q  ++ P  +LA+QHYE
Sbjct: 612  AWRAVCEDMEAPTPMDRLILGDVGFGKTEIAMRAAFKAVADGYQVALLVPTTLLAKQHYE 671

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                      + +  I+  + QA  R   ++++ G+  I+IGT AL      +  L L+I
Sbjct: 672  SFLDRFSGFPVRICHISRMVSQAEIRATRKKLSLGEIDILIGTTALISKETSFRNLGLLI 731

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV Q+ KL  + T+  VL ++ATPIPRTL ++  G   IS I   P GRKPI+
Sbjct: 732  IDEEQRFGVGQKEKLKSRYTSVDVLTLSATPIPRTLQMSLSGLRGISFIMTPPPGRKPIR 791

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T I+  +R   + E +   L+   + ++I  +++                L       I 
Sbjct: 792  TAILTFDR-HRIHEAIDRELARDGQVFFIHNRVQTISRMVHY-----LAKLFPEVP--IG 843

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M D   E VM+ F     ++L++T ++E G+D+  A+ II+  A+ FG+++L+Q+
Sbjct: 844  MAHGQMEDSRMEEVMEKFIQRHYRILVSTAIVESGLDIPAANTIIVNRADMFGISELYQI 903

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR  + +    L      L+  +  RL  L++      G+ IA  D++ R  G +L
Sbjct: 904  RGRVGRSGQQAYAYFLIPSESGLTDTARKRLKTLQDNTSLGSGYQIAMRDMEIRGAGSLL 963

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL--------- 685
            G +Q+G     +   +L+  ++E A +        +P+   +  + +RI L         
Sbjct: 964  GHQQTGHI--ALVGLDLYLEMVEEAIQS-----RIEPEAVPLAREEVRIDLGRESRFPED 1016

Query: 686  YLYQYNEAFQFIR 698
            Y+    +   F R
Sbjct: 1017 YIEHPAQRIDFYR 1029


>gi|296535472|ref|ZP_06897661.1| transcription-repair coupling factor [Roseomonas cervicalis ATCC
            49957]
 gi|296264193|gb|EFH10629.1| transcription-repair coupling factor [Roseomonas cervicalis ATCC
            49957]
          Length = 1174

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 139/456 (30%), Positives = 227/456 (49%), Gaps = 17/456 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D    +  + R A  +     +A  L+R   + + +    +        +     PF+ T
Sbjct: 565  DKLGGTSWQNRKAKAKQRIADMAGQLIRIAAERRVKDAPLVTPPEGAWDEFCARFPFAET 624

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q+ AI D+L+D++    M R++ GDVG GKT +AL A      +G Q  ++ P  +L+
Sbjct: 625  EDQQRAIADVLEDLAAGRPMDRLICGDVGFGKTEIALRAAFVVAMSGAQVAVVVPTTLLS 684

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH+       +   I V  ++  +      +    +A G  +I++GTHAL    +++  
Sbjct: 685  RQHFRTFSARFEGLPIKVAQLSRMVTAKEAAQVKAGLADGSINIVVGTHALLAKGVEFAD 744

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L LVIVDE+  FGV  + +L       HVL +TATPIPRTL L   G  ++S I   P  
Sbjct: 745  LGLVIVDEEQHFGVAHKERLKSLKADVHVLTLTATPIPRTLQLALTGVREMSVIATPPVD 804

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I+P + +  + E L+     G + + + P++E+  +        R   +    
Sbjct: 805  RLAVRTFIMPFDAV-VIREALQRERFRGGQVFCVVPRLEDLPKMVT-----RLADIVPE- 857

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + +   HGR++  + E VM  F +G   +L+AT ++E G+D+   + +II  A+ FGLA
Sbjct: 858  -ARVVQAHGRLTPTELERVMTEFGDGKFDILLATNIVESGLDMPAVNTLIIYRADMFGLA 916

Query: 575  QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRK 629
            QL+QLRGRVGRG++     L +     LS  +  RL+V++   N   GF +A  DL  R 
Sbjct: 917  QLYQLRGRVGRGKQRGYAYLTWPATQRLSPAAEKRLAVMQTLDNLGAGFTLASHDLDIRG 976

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             G +LG +QSG         EL+  +LE A  D K 
Sbjct: 977  AGNLLGDEQSGHI--REVGIELYQQMLEEAVADIKA 1010


>gi|53714414|ref|YP_100406.1| transcription-repair coupling factor [Bacteroides fragilis YCH46]
 gi|52217279|dbj|BAD49872.1| transcription-repair coupling factor [Bacteroides fragilis YCH46]
          Length = 1125

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 222/450 (49%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 508 WEKLKERTKTKIKDIARDLIKLY--SQRREEKGFAYSPDSFLQRELEASFIYEDTPDQSK 565

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+ QDM +   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 566 ATADVKQDMERDMPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 625

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +   +     VE ++     A  +  ++ +  G  +I+IGTH +    +++  L L+I
Sbjct: 626 TFRDRLKGLPCRVEYLSRARTAAQAKAVIKGLEAGDVNILIGTHRILGKDVKFKDLGLLI 685

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+  P  R PI+
Sbjct: 686 IDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQ 745

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +  + + + +   +S   + + +  +I    E            L       IA
Sbjct: 746 TEVHTFSE-EVIADAINFEMSRNGQVFLVNNRIANLPELKAMI-------LRHIPDCRIA 797

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +LIATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 798 IGHGQMEPAELEQIIFGFVNYDYDVLIATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 857

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 858 RGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 917

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 918 GAEQSGFIADL--GYETYQKILSEAVHELK 945


>gi|27904769|ref|NP_777895.1| transcription-repair coupling factor [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46396116|sp|Q89AK2|MFD_BUCBP RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|27904167|gb|AAO27000.1| transcription-repair coupling factor [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 697

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 135/431 (31%), Positives = 215/431 (49%), Gaps = 15/431 (3%)

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
            LL +      + G          +      PF+ T  Q+SAI  +L DM +   M R++
Sbjct: 120 ILLNIYSHRISQKGFSFKKHHTKYKIFCERFPFTLTPDQDSAINSVLSDMYKSTPMDRLV 179

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GDVG GKT VA+ A   AV    Q  I+ P  +LAQQH+       +     +EI++  
Sbjct: 180 CGDVGFGKTEVAMRATFLAVCNQKQVAILVPTTLLAQQHFNNFTLRFKYWSTKIEILSRF 239

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
             +    + +  +  G  H++IGTH +   ++++  L L+IVDE+HRFGV  + ++   +
Sbjct: 240 QSETKCNEIINNVNIGNVHVLIGTHKILLKNLKWKNLGLLIVDEEHRFGVHHKEQIKLIS 299

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               VL +TATPIPRTL +  +G  D+S I   P  R  +KT +   +    + + +   
Sbjct: 300 NNIDVLTLTATPIPRTLNMAFVGIRDLSIIATPPKQRLIVKTFVREFSYT-VIRKAILRE 358

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +  G + Y+I   + + +             L     ++I I HG++   D ES+M+ F 
Sbjct: 359 ILRGGQVYYIYNNVNKIERKKI-----ELKKLVPE--ANIRIGHGQLRSTDLESIMNDFY 411

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH- 597
           +    +L+ +T+IE GID+ + + IIIENA +FGLAQLHQLRGRVGR +  +   LL   
Sbjct: 412 HKRFNVLVCSTIIETGIDIPNVNTIIIENANNFGLAQLHQLRGRVGRSQHQAYAWLLVPS 471

Query: 598 -PPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
              +  ++  R+     +++    F +A  DL+ R  GEILG  QSG    +     L+ 
Sbjct: 472 LKDIKSDAKKRIDAITSIESFGSCFELANRDLEIRGIGEILGNNQSGHITKIGFS--LYM 529

Query: 654 SLLEIARKDAK 664
            LL  A ++ K
Sbjct: 530 KLLMNAVRNIK 540


>gi|282858160|ref|ZP_06267355.1| transcription-repair-coupling factor [Pyramidobacter piscolens
           W5455]
 gi|282584082|gb|EFB89455.1| transcription-repair-coupling factor [Pyramidobacter piscolens
           W5455]
          Length = 990

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 141/446 (31%), Positives = 228/446 (51%), Gaps = 20/446 (4%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
              K   W S  ++  A  E  A  +  L  +++           +G + ++   + P+ 
Sbjct: 410 DSLKSKRWRSAWKKAEAQIEAEAQGLLNLYAQRELADG--RAFGRDGDLLKRFEESFPYK 467

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q  AI+D+  DM ++  M R++ GDVG GKT V L A    VE G QA I+AP  +
Sbjct: 468 ETVDQLRAIRDVKHDMERRWPMDRLIVGDVGYGKTEVVLRAAVKTVENGAQAAIIAPTTV 527

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA QHY           I VE+++  +P+  +++ L+  A+G+  I+IGTH LFQD I++
Sbjct: 528 LALQHYRTCVARVGELPIRVELLSRMIPKKKQKEILDETANGRVDILIGTHRLFQDDIRF 587

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             L L+I+DE+HRFGV+ + +L        VL ++ATPIPR+L +   G  DIS I   P
Sbjct: 588 KDLGLLIIDEEHRFGVKHKERLKVAHPGLDVLSLSATPIPRSLSMAMRGIRDISVIATSP 647

Query: 453 AGRKPIKTVIIPINRIDEVIERLK--VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            GR  + TV    +R D  +        L  G + Y++  +I++ +        +    L
Sbjct: 648 RGRGEVFTV---TSRWDPSLAHDAVLRELMRGGQVYYLHNRIDDIE--------QIAARL 696

Query: 511 HEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
              F     A+ HG+M + + E  M+ F +G  ++L+ TT+IE G+DV  A+ +I+++  
Sbjct: 697 ANRFPGHRTAVAHGQMGERELEKTMNEFYDGKIEILVCTTIIESGLDVPRANTLIVDDVR 756

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPL----SKNSYTRLSVLKNTEDGFLIAEEDL 625
             GLAQ+HQ+RGR+GR  E +  +  Y        ++     L  + +   G+ +A+ DL
Sbjct: 757 RLGLAQMHQIRGRIGRRSENAYALFFYESEESGGQTRERLEALGAVGSQNGGYQLAQRDL 816

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPEL 651
           + R  GEILG +Q G  + +     L
Sbjct: 817 EIRGAGEILGTEQHGFKERIGYTLYL 842


>gi|299143244|ref|ZP_07036324.1| transcription-repair coupling factor [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298517729|gb|EFI41468.1| transcription-repair coupling factor [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 1161

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 132/443 (29%), Positives = 221/443 (49%), Gaps = 15/443 (3%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K    EW+    +     E +A  +  L  ++Q     G   + + +  ++      +  
Sbjct: 561 KLNSLEWSKTKSKAKKSVEDMAEDLIKLYAKRQE--VKGFAFSEDTQWQREFEDAFEYEE 618

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  + ++I  DM     M R+L  DVG GKT VA+ A   A+  G Q   + P  IL
Sbjct: 619 TQGQLESSEEIKNDMQSDKPMDRLLCADVGYGKTEVAIRAAFKAIMDGKQVAFLVPTTIL 678

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY  + +  ++  + + ++     +  ++K LE +  G   IIIGTH +    + + 
Sbjct: 679 AQQHYNTMIERFKDFPVKIALLCRFRSKMQQKKDLEDLKKGFVDIIIGTHRILSKDVVFK 738

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL         L +TATPIPRTL ++ +G  D+S I E P 
Sbjct: 739 DLGLLVIDEEQRFGVRHKEKLKILKENVDTLTLTATPIPRTLQMSMVGIRDMSVIEEPPE 798

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N +  + E +   +  G + Y++  ++     +N  + +    +L   
Sbjct: 799 ERFPVQTYVLEYNDM-MIREAILKEIERGGQVYFVYNKV-----ANIENKLIELRNLVPE 852

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +IA  HG+MS+   E  M SF N    +L+ +T+IE G+D+ +A+ II+ +A   GL
Sbjct: 853 AKFNIA--HGQMSEQLLEDTMISFINHEFDVLLCSTIIETGMDIQNANTIIVSDANRLGL 910

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           +QL+QLRGR+GR  +I+     Y     LS+ +  RL  +K       G+ IA  DL+ R
Sbjct: 911 SQLYQLRGRIGRSNKIAYAYFTYGRDISLSEIAQKRLKSIKEFTEFGSGYKIALRDLEIR 970

Query: 629 KEGEILGIKQSGMPKFLIAQPEL 651
             G ILG +Q G    +     +
Sbjct: 971 GSGSILGSRQHGHIDSIGYDLYI 993


>gi|60682433|ref|YP_212577.1| putative transcription-repair coupling factor [Bacteroides fragilis
           NCTC 9343]
 gi|265766134|ref|ZP_06094175.1| transcription-repair coupling factor [Bacteroides sp. 2_1_16]
 gi|60493867|emb|CAH08658.1| putative transcription-repair coupling factor [Bacteroides fragilis
           NCTC 9343]
 gi|263253802|gb|EEZ25267.1| transcription-repair coupling factor [Bacteroides sp. 2_1_16]
          Length = 1125

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 222/450 (49%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 508 WEKLKERTKTKIKDIARDLIKLY--SQRREEKGFAYSPDSFLQRELEASFIYEDTPDQSK 565

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+ QDM +   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 566 ATADVKQDMERDMPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 625

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +   +     VE ++     A  +  ++ +  G  +I+IGTH +    +++  L L+I
Sbjct: 626 TFRDRLKGLPCRVEYLSRARTAAQAKAVIKGLEAGDVNILIGTHRILGKDVKFKDLGLLI 685

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+  P  R PI+
Sbjct: 686 IDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQ 745

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +  + + + +   +S   + + +  +I    E            L       IA
Sbjct: 746 TEVHTFSE-EVIADAINFEMSRNGQVFLVNNRIANLPELKAMI-------LRHIPDCRIA 797

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +LIATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 798 IGHGQMEPAELEQIIFGFVNYDYDVLIATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 857

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 858 RGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 917

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 918 GAEQSGFIADL--GYETYQKILSEAVHELK 945


>gi|319902708|ref|YP_004162436.1| transcription-repair coupling factor [Bacteroides helcogenes P
           36-108]
 gi|319417739|gb|ADV44850.1| transcription-repair coupling factor [Bacteroides helcogenes P
           36-108]
          Length = 1129

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 229/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W        +  + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 513 WEKLKDRTKSKIKDIARDLIKLY--SQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSK 570

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 571 ATADVKADMESTRPMDRLVCGDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQ 630

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  +     V+ ++     A  +  ++ +A G  +I+IGTH +    +++  L L+I
Sbjct: 631 TFKERLKGLPCRVDYLSRARTAAQAKGVIKALADGDVNILIGTHRILGKDVKFKDLGLLI 690

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + LG  D+S I+  P  R PI+
Sbjct: 691 IDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLLGARDLSVISTPPPNRYPIQ 750

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + + +   +S   + +++  +I    E   ++++ER           + 
Sbjct: 751 TEVHTFNE-EVIADAINFEMSRNGQVFFVNNRISNLYE--LKAMIER-----RIPDCRVC 802

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 803 IGHGQMEPAELEKIILDFVNYDYDVLLATTIIESGIDIPNANTIIINAAQNFGLSDLHQM 862

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 863 RGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 922

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A ++ K
Sbjct: 923 GAEQSGFIADL--GYETYQKILSEAVQELK 950


>gi|149914914|ref|ZP_01903443.1| transcription-repair coupling factor [Roseobacter sp. AzwK-3b]
 gi|149811102|gb|EDM70939.1| transcription-repair coupling factor [Roseobacter sp. AzwK-3b]
          Length = 1155

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 145/464 (31%), Positives = 238/464 (51%), Gaps = 19/464 (4%)

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKI 261
           E  +   +     D       + + A  +    ++A  L+R   + +      +  E   
Sbjct: 526 ELLSRFGHEEGLLDKLGGGAWQAKKARLKERIREMADRLIRIAAERELRRAPVLEPEHHA 585

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            ++     P++ T  Q  AI+D+L D+     M R++ GDVG GKT VA+ A   A  +G
Sbjct: 586 WEEFSARFPYTETDDQLRAIEDVLADLDAGRPMDRLICGDVGFGKTEVAMRAAFVAAMSG 645

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++AP  +LA+QHY+   +  +   + V  ++  + Q       E +A G   I++G
Sbjct: 646 VQVAVVAPTTLLARQHYQSFAERFRGFPVTVRPLSRFVSQRDANLTREGLASGTVDIVVG 705

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           THAL   +I++  L L+++DE+ RFGV  + +L Q  +  HVL +TATPIPRTL L+  G
Sbjct: 706 THALLAKNIRFKNLGLLVIDEEQRFGVAHKERLKQLRSDVHVLTLTATPIPRTLQLSLSG 765

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D+S I   P  R  I+T +   + +  + E L      G +++++ P+I++  E    
Sbjct: 766 VRDLSIIGTPPVDRLSIRTYVSEFDPV-TIREALLREHYRGGQSFFVVPRIDDLPEIE-- 822

Query: 502 SVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
                   L E     S  I HG+M+  D +  M++F +G   +L+ATT++E G+D+  A
Sbjct: 823 ------AFLSEQVPEVSYVIAHGQMAARDLDDRMNAFYDGKYDVLLATTIVESGLDIPTA 876

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE--- 615
           + +II  A+ FGL+QL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +   
Sbjct: 877 NTMIIHRADMFGLSQLYQIRGRVGRSKTRAYAYLTTRPRARLTPAAEKRLRVLGSLDTLG 936

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            GF +A +DL  R  G +LG +QSG  +      EL+ S+LE A
Sbjct: 937 AGFTLASQDLDIRGAGNLLGEEQSGQMRD--VGYELYQSMLEEA 978


>gi|304319738|ref|YP_003853381.1| transcription-repair coupling factor [Parvularcula bermudensis
           HTCC2503]
 gi|303298641|gb|ADM08240.1| transcription-repair coupling factor [Parvularcula bermudensis
           HTCC2503]
          Length = 1163

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 142/456 (31%), Positives = 225/456 (49%), Gaps = 19/456 (4%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIAQKILRNI 269
           P    D       + R A        +A  L+    K+       +        +     
Sbjct: 554 PSHPLDRLGGGAWQSRKAKMRERIRLMAEELIAIAAKRAARRAEELAPPSGAYDEFAARF 613

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           P++ T  Q +AI D++ D+S+   M R++ GDVG GKT VAL A   A  +G Q  ++AP
Sbjct: 614 PYTETDDQLNAIDDVISDLSRGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGRQVAVIAP 673

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             +L +QH+    +  Q   + +  ++  +         E I +G   I+IGTHAL    
Sbjct: 674 TTLLVRQHFRGFVERFQGFPVKIRQLSRFVSAKEASATREGIKNGDVDIVIGTHALLSKH 733

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + +  L L+I+DE+  FGV+ + +L +     HVL +TATPIPRTL L+  G  D+S I 
Sbjct: 734 VAFRDLGLLIIDEEQHFGVKHKERLKEFRGDTHVLTLTATPIPRTLQLSMAGIRDLSLIA 793

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R  ++T I P + +    E L      G +++++ P++ +             + 
Sbjct: 794 TPPVDRLAVRTTIGPFDPV-VARETLLREHYRGGQSFYVVPRLSDIDT--------VADF 844

Query: 510 LHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           L          I HG+MS  + E VM+ F +G   +L+ATT+IE GIDV  A+ +++  A
Sbjct: 845 LRHQVPEIKFEIGHGQMSATELEDVMNGFYDGKFDVLLATTIIESGIDVPTANTLVVHRA 904

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEE 623
           + FGLAQL+Q+RGRVGR ++ +   L   P   +++ +  RL VL++ +    GF +A  
Sbjct: 905 DMFGLAQLYQIRGRVGRSKQRAYAYLTTSPRKKMTEGAEKRLKVLQSLDTLGAGFTLASH 964

Query: 624 DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           DL  R  G +LG +QSG  K      EL+  +LE A
Sbjct: 965 DLDIRGAGNLLGEEQSGNVKD--VGVELYQHMLEEA 998


>gi|289704875|ref|ZP_06501292.1| transcription-repair coupling factor [Micrococcus luteus SK58]
 gi|289558371|gb|EFD51645.1| transcription-repair coupling factor [Micrococcus luteus SK58]
          Length = 1218

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 144/483 (29%), Positives = 234/483 (48%), Gaps = 17/483 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +       +AG++  L          G     +     ++    PF  T  Q 
Sbjct: 619  DWAQTKSKAKRATREIAGELIRLY--SARMASRGHAFAPDTPWQAELEEAFPFIETPDQL 676

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I+D+ +DM     M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LA+QH+
Sbjct: 677  TTIEDVKKDMEAAVPMDRLVSGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPTTLLARQHH 736

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +          + V  ++        ++ +E +AHG+  ++IGTH L  D +Q+  L LV
Sbjct: 737  QTFSDRFAGFPVKVAALSRFQTAKESKEVIEGLAHGEVDVVIGTHRLLSDQVQFKDLGLV 796

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +  T   VL M+ATPIPRTL ++  G  + S +   P  R P+
Sbjct: 797  IVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATAPEERHPV 856

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   ++  L    + +++  ++          V +R   L     + I
Sbjct: 857  LTSVGPYSD-QQVTAAIRRELMREGQVFYVHNRVTTID-----KVAKRIAELVPE--ARI 908

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+MS+   E +M  F      +L++TT+IE G+D+ +A+ +I+E+A  +GL+QLHQ
Sbjct: 909  AVAHGKMSEARLEQIMVDFWERKFDVLVSTTIIETGLDIANANTLIVEDAHRYGLSQLHQ 968

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  PL + +  RL  +    +   G  +A +DL+ R  G +
Sbjct: 969  LRGRVGRGRERAYAYFLYDPQKPLGEVALERLKAVATHNELGAGMQLAMKDLEIRGAGNL 1028

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +QSG         +L+  ++  A  D K      P    V       L + Y   E 
Sbjct: 1029 LGGEQSGHI--AGVGFDLYLRMVGEAVADFKGEEDTAPAEVKVELPVNAHLPHDYVPGER 1086

Query: 694  FQF 696
             + 
Sbjct: 1087 LRL 1089


>gi|332299515|ref|YP_004441436.1| transcription-repair coupling factor [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176578|gb|AEE12268.1| transcription-repair coupling factor [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 1115

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 132/477 (27%), Positives = 234/477 (49%), Gaps = 16/477 (3%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P+ +K         +  A  ++ +    L+ +    K++ G   + +  +  ++  +  +
Sbjct: 489 PQLSKLGTGAWTKLKERAKTKIKSIARDLIALYAARKEQPGFAFSPDSYLQHEMEASFAY 548

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q  AI+ I  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  
Sbjct: 549 EETPDQLKAIEQIKADMESNRPMDRLVCGDVGFGKTEVAVRAAFKAVADSKQVAVLVPTT 608

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA QHY+   +  +     +E ++        +  L+ +A G+  I+IGTH L    + 
Sbjct: 609 ILAYQHYQTFSQRLEGLPCRIEYLSRAKSDKQSKAILKDLADGRVDILIGTHRLLGKGVT 668

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+I+DE+ +FGV+ + +L +       L ++ATPIPRTL  + +G  D+S I   
Sbjct: 669 FKSLGLLIIDEEQKFGVKAKEQLRKLQVNVDTLTLSATPIPRTLQFSLMGARDLSNINTP 728

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R+P+ T +I  ++ + + + +   L+   + +++  +IE       +          
Sbjct: 729 PRNRQPVTTRLIRWSQ-ETIADAIGYELARHGQVFFVHNRIESIHGVAGQIE-------E 780

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 IAI HGR++  + E ++  F      LL+ATT+IE GID+ + + I+I +A  +
Sbjct: 781 CVPGIRIAIAHGRLTPSETEQILLDFAERKYDLLLATTIIENGIDMPNVNTILINSAHRY 840

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLK 626
           GL+ LHQLRGRVGRG + + C L+  P   L++ +  R+  +++  D   G  IA +DL 
Sbjct: 841 GLSDLHQLRGRVGRGSQRAYCYLITPPLGTLTEAAARRVKAIESFSDLGSGMRIALQDLD 900

Query: 627 QRKEGEILGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
            R  G ILG +QSG      F   +    +++ E+ ++D   +     +  +  G +
Sbjct: 901 IRGAGNILGTEQSGFIADLGFETYRKVFEEAVREVKQEDFAALFAAQTEQQAELGNA 957


>gi|312194532|ref|YP_004014593.1| transcription-repair coupling factor [Frankia sp. EuI1c]
 gi|311225868|gb|ADP78723.1| transcription-repair coupling factor [Frankia sp. EuI1c]
          Length = 1215

 Score =  333 bits (853), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 146/483 (30%), Positives = 240/483 (49%), Gaps = 17/483 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +AG++  L          G     +    +++    PF  T  Q 
Sbjct: 604  DWAKRKSRARKAVKEIAGELIRLY--SARMAAPGYAFGPDNPWQRELEDAFPFRETPDQL 661

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 662  SAIDEVKRDMERAVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 721

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      +IV+ ++       ++  L  +A G   ++IGTH L  +  ++  L LV
Sbjct: 722  QTFSERYAAFPVIVKAMSRFNTATEQKAVLAGLADGTVDVVIGTHRLLSNETRFKDLGLV 781

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +  TA  VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 782  IVDEEQRFGVEHKEHLKKMRTAVDVLTMSATPIPRTLEMSITGIRELSTIDTPPEERHPV 841

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P ++  +V   ++  L    + ++I  ++E            R   L     + I
Sbjct: 842  LTSVSPYDQR-QVAAAIRRELLREGQVFFIHNRVESID-----RAAARLRELVPE--ARI 893

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG++S+   E VM SF      +L+ TT++E G+D+ +A+ +I+E A++FGL+QLHQ
Sbjct: 894  ATAHGQLSEDVLEKVMVSFWERKFDVLVCTTIVESGLDISNANTLIVERADNFGLSQLHQ 953

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  PL++ ++ RL+ +    D   G  +A +DL+ R  G +
Sbjct: 954  LRGRVGRGRERAYAYFLYPPDRPLTETAHDRLATIALNTDLGAGMAVAMKDLEIRGAGNL 1013

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +QSG    +     L+  ++  A  D K    ++     V       L + Y   E 
Sbjct: 1014 LGGEQSGHIAAIGFD--LYVRMVGEAVADFKGAAPEELPEVKVELPVDASLPHDYVGAER 1071

Query: 694  FQF 696
             + 
Sbjct: 1072 LRL 1074


>gi|313673697|ref|YP_004051808.1| transcription-repair coupling factor [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940453|gb|ADR19645.1| transcription-repair coupling factor [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 1098

 Score =  333 bits (853), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 143/449 (31%), Positives = 232/449 (51%), Gaps = 16/449 (3%)

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
                +  A        I LL +  + K ++G     +G   + I  +  +  T+ Q +A
Sbjct: 516 RWKKLKEQAQKSAKKVAIDLLKLYAERKAKLGFSFKDDGTFMKIIEDSFEYDETEDQINA 575

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I+D++ DM  +  M R++ GDVG GKT VA+ A      +G Q  ++AP  IL +QH+E 
Sbjct: 576 IRDVIADMESEKAMDRLICGDVGFGKTEVAIRAACKCCASGKQVALLAPTTILVKQHFET 635

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            K+   N    +E ++    +    + L ++A+G+  IIIGTH L  + + ++ L L+I+
Sbjct: 636 FKRRFSNLPFKIEYVSRFKSKKEINETLRKVANGEIDIIIGTHRLLSNDVSFHDLGLLII 695

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+ RFGV  + K+    +   VL M+ATPIPRTL  +  G  DIS I   P  R P+ T
Sbjct: 696 DEEQRFGVAHKEKIKNLKSNIDVLAMSATPIPRTLQFSLAGIRDISIIETPPEERLPVLT 755

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            II  N  ++V + +   L  G + Y++   + + +E       + ++       + +AI
Sbjct: 756 NII--NNEEDVKKAIIHELKRGGQVYYLYNDLSKIEE-------KAYSIKSMLPEAEVAI 806

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG+M     E  +D+F +G   +L+ +T+IE GID+ + + III+ A+ FGL+QL+QL+
Sbjct: 807 AHGQMDPEKVEKTLDAFYDGKIDVLVCSTIIENGIDIPNVNTIIIDGADKFGLSQLYQLK 866

Query: 581 GRVGRGEEISSCILLYH--PPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEILG 635
           GRVGR      C L       LS  +  RL +   +     GF IA  DL+ R  GE+LG
Sbjct: 867 GRVGRSRVRGYCYLYIRNFNVLSTIAKKRLKIIQQMSELGSGFKIASYDLQLRGAGELLG 926

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            +QSG    +    EL+  ++  A K+ +
Sbjct: 927 AEQSGHISSI--GYELYIQMINDAVKELR 953


>gi|192291316|ref|YP_001991921.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            TIE-1]
 gi|192285065|gb|ACF01446.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            TIE-1]
          Length = 1172

 Score =  333 bits (853), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 146/462 (31%), Positives = 235/462 (50%), Gaps = 18/462 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D    S  + R A  +    QIA  L++   +        + ++ ++  +     P+  T
Sbjct: 565  DKLGGSGWQARKAKLKNRIRQIAGELIKVAAERHLREAPKLPIQPQLYDEFCARFPYDET 624

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q +AI   L D+ +   M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA
Sbjct: 625  EDQLAAINAALGDLEKGTPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLA 684

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH +   +  +   + V   +  +      +  + IA G   I++GTHAL   SI++  
Sbjct: 685  RQHAKTFTERFRGFPVNVGQASRLVSTKELSQVKKGIADGTLDIVVGTHALLGKSIKFKD 744

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L LVIVDE+  FGV  + KL Q  +  HVL ++ATPIPRTL L   G  D+S I   P  
Sbjct: 745  LGLVIVDEEQHFGVTHKEKLKQLRSEVHVLTLSATPIPRTLQLAMTGVRDLSIIASPPVD 804

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +A+++ P+I++  E          + L +H 
Sbjct: 805  RLAVRTFVAPHDPL-MIREALLRERYRGGQAFYVVPRIDDLAEVK--------DFLDKHV 855

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M     E +M +F +G   +L++TT++E G+D+ +A+ +I+  A+ FGL
Sbjct: 856  PEMKVAVAHGQMPPAVIEDIMSAFYDGKFDILLSTTIVESGLDIPNANTLIVHRADMFGL 915

Query: 574  AQLHQLRGRVGRGE-EISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
            AQL+QLRGRVGR +    +   L    ++  +  RL VL++ E    GF +A  DL  R 
Sbjct: 916  AQLYQLRGRVGRSKLRAYALFTLPQHNITAQAERRLKVLQSLETLGAGFQLASHDLDIRG 975

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
             G +LG +QSG         EL+  +LE A  + K  +  +P
Sbjct: 976  AGNLLGEEQSGHI--KEVGFELYQQMLEEAITNLKAGIVDEP 1015


>gi|317052468|ref|YP_004113584.1| transcription-repair coupling factor [Desulfurispirillum indicum
           S5]
 gi|316947552|gb|ADU67028.1| transcription-repair coupling factor [Desulfurispirillum indicum
           S5]
          Length = 1048

 Score =  332 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 140/457 (30%), Positives = 236/457 (51%), Gaps = 21/457 (4%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
             +R R + +++    +    +R++ K+   +    +  +  + +   P+  T+ Q  AI
Sbjct: 471 RKSRARKSVEDIAQSLMQTDALRRRHKEHTYL---RDSSLYDEFVAQFPYEETEDQLQAI 527

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           K+ ++DM   + M R++ GDVG GKT +AL A    VE+G QA I+AP  IL +QH+   
Sbjct: 528 KETIEDMCSPHPMDRLVCGDVGYGKTEIALRAAMKCVESGYQAAILAPTTILVEQHFRTF 587

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
           ++      I V++++        + A+ R+A G+  I+IGTH L    + ++ L L+++D
Sbjct: 588 RERFTPFGIRVDMLSRFRSAKQNQDAIARLAAGEIDIVIGTHKLLGKGVSFHNLALLVID 647

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+ RFGV  + KL Q      VL +TATPIPRTL +   G   +S I   P  R+ IKT 
Sbjct: 648 EEQRFGVTHKEKLKQFKANVDVLTLTATPIPRTLHMAMGGIKKMSVIETPPKDRRAIKTE 707

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           +I   + + + + L      G + Y++  ++E            R   L     + +A+ 
Sbjct: 708 VIEF-QDEILRQGLMREFHRGGQIYFLHNRVETINAIAL-----RVQGLIPE--ARVAVA 759

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+MS+   E VM  F  G   +L+ ++++E G+DV  A+ I I  A+  GLAQL+QLRG
Sbjct: 760 HGQMSEAQLERVMLEFSAGEHDVLVCSSIVESGLDVPRANTIFINRADTLGLAQLYQLRG 819

Query: 582 RVGRGEEISSCILLYHPPLSKN--SYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGI 636
           RVGR E  + C L+  P  + +  +  R+ V++       GF +A  DL+ R  G +LG+
Sbjct: 820 RVGRSERRAFCYLIIPPFDTLHDVAQKRIRVIEELSYLGAGFRLATYDLEIRGAGNLLGM 879

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
           +QSG         E++  +L   R+  + +  Q  +L
Sbjct: 880 EQSGQI--ASVGFEMYTDML---RECVQQLRGQSEEL 911


>gi|331265444|ref|YP_004325074.1| transcription-repair coupling factor [Streptococcus oralis Uo5]
 gi|326682116|emb|CBY99732.1| transcription-repair coupling factor [Streptococcus oralis Uo5]
          Length = 1167

 Score =  332 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 146/452 (32%), Positives = 234/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++  +  E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKSQVEDIADDLIKLY--SERSQLKGFAFSADDDDQHTFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQIDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++            + + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTID--------RKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGFVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|296453842|ref|YP_003660985.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            longum JDM301]
 gi|296183273|gb|ADH00155.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
            longum JDM301]
          Length = 1194

 Score =  332 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 230/452 (50%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q  +      + +    +++    P+  T  Q 
Sbjct: 587  DWAATKAKARKHVHEIADDLIKLYSARQRARG--FAFSPDTPWQKELEDAFPYQETADQL 644

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQHY
Sbjct: 645  TTIDEVKSDMEKPVPMDRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHY 704

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++           +E +  G   ++IGTH L    I +  L LV
Sbjct: 705  ETFSERFEGFPVNVAAMSRFQTTKEINGTVEGLRSGTVDVVIGTHKLLNPKITFKDLGLV 764

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 765  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 824

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  +++     +  S+ ++ ++L     + +
Sbjct: 825  LTYVGAYED-AQVTAAVRRELLRGGQVFYVHNRVQ-----DIASIADKIHTLVPE--AHV 876

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + ++  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 877  GIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 936

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 937  LRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 996

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 997  LGDEQSGHIE--GVGFDLYVRMVSEAVEKYKE 1026


>gi|307710364|ref|ZP_07646805.1| transcription-repair coupling factor [Streptococcus mitis SK564]
 gi|307618956|gb|EFN98091.1| transcription-repair coupling factor [Streptococcus mitis SK564]
          Length = 1169

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 147/452 (32%), Positives = 234/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + + +         P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDEDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTETLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++           ++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTID--------QKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|89068292|ref|ZP_01155702.1| transcription-repair coupling factor [Oceanicola granulosus
           HTCC2516]
 gi|89046209|gb|EAR52267.1| transcription-repair coupling factor [Oceanicola granulosus
           HTCC2516]
          Length = 1151

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 135/450 (30%), Positives = 230/450 (51%), Gaps = 19/450 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        +     + ++ L   P+  T
Sbjct: 543 DRLGGGAWQAKKARLKERIREMAERLIRVAAERALRHAPILTPPDGLWEQFLARFPYQET 602

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q +AI+ +L+DM     M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA
Sbjct: 603 DDQLAAIEQVLEDMEAGTPMDRLVCGDVGFGKTEVAMRAAFVAAMSGSQVAVVAPTTLLA 662

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH +  K+  +   + V  ++  + Q    +    +A G   I++GTHAL    +++  
Sbjct: 663 RQHAQSFKERFRGFPLKVRALSRFVSQKEAAETRAGLASGDVDIVVGTHALLSKQVKFRD 722

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+++DE+ RFGV  + +L +  T  HVL +TATPIPRTL L+  G  ++S I   P  
Sbjct: 723 LGLLVIDEEQRFGVGHKERLKRMRTDVHVLTLTATPIPRTLQLSLSGVRELSIIGTPPVD 782

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  V E L      G + +++ P+I +  E+           L E  
Sbjct: 783 RLAIRTYVSEFDAV-TVREALLRERYRGGQCFFVVPRISDMAEAE--------AFLREQV 833

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S+   HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +I+  A+ +GL
Sbjct: 834 PEVSVVTAHGQMAAGELDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMIVWRADMYGL 893

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           +QL+Q+RGRVGR +  +   +   P   L+  +  RL VL + +    GF +A +DL  R
Sbjct: 894 SQLYQIRGRVGRSKTRAYAYMTTKPRARLTDQAEKRLRVLASLDSLGAGFTLASQDLDIR 953

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             G +LG +QSG         EL+  +LE 
Sbjct: 954 GAGNLLGEEQSGQM--REVGYELYQQMLEE 981


>gi|316934177|ref|YP_004109159.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            DX-1]
 gi|315601891|gb|ADU44426.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            DX-1]
          Length = 1172

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 146/462 (31%), Positives = 234/462 (50%), Gaps = 18/462 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D    S  + R A  +    QIA  L++   +        + ++ ++  +     P+  T
Sbjct: 565  DKLGGSGWQARKAKLKNRIRQIAGELIKVAAERHLREAPKLPIQPQLYDEFCARFPYDET 624

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q +AI   L D+ +   M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA
Sbjct: 625  EDQLAAINAALGDLEKGTPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLA 684

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH +   +  +   + V   +  +      +  + IA G   I++GTHAL   SI++  
Sbjct: 685  RQHAKTFTERFRGFPVHVGQASRLVSAKELTQVKKGIADGTLDIVVGTHALLGKSIKFKD 744

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L LVIVDE+  FGV  + KL Q     HVL ++ATPIPRTL L   G  D+S I   P  
Sbjct: 745  LGLVIVDEEQHFGVTHKEKLKQLRAEVHVLTLSATPIPRTLQLAMTGVRDLSIIASPPVD 804

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +A+++ P+I++  E          + L +H 
Sbjct: 805  RLAVRTFVAPHDPL-MIREALLRERYRGGQAFYVVPRIDDLAEVK--------DFLDKHV 855

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M     E +M +F +G   +L++TT++E G+D+ +A+ +I+  A+ FGL
Sbjct: 856  PEMKVAVAHGQMPPAVIEDIMSAFYDGKFDILLSTTIVESGLDIPNANTLIVHRADMFGL 915

Query: 574  AQLHQLRGRVGRGE-EISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
            AQL+QLRGRVGR +    +   L    ++  +  RL VL++ E    GF +A  DL  R 
Sbjct: 916  AQLYQLRGRVGRSKLRAYALFTLPQHNITAQAERRLKVLQSLETLGAGFQLASHDLDIRG 975

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
             G +LG +QSG         EL+  +LE A  + K  +  +P
Sbjct: 976  AGNLLGEEQSGHI--KEVGFELYQQMLEEAITNLKAGIVDEP 1015


>gi|320352705|ref|YP_004194044.1| transcription-repair coupling factor [Desulfobulbus propionicus DSM
            2032]
 gi|320121207|gb|ADW16753.1| transcription-repair coupling factor [Desulfobulbus propionicus DSM
            2032]
          Length = 1177

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 131/477 (27%), Positives = 231/477 (48%), Gaps = 16/477 (3%)

Query: 194  LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
            + +  + S  +       P+            ++   + +      LL +  Q     G 
Sbjct: 545  VDRLHWVSRYQGLTD-QQPKLDSLGSQRWQTTKKKVTEAVWKIAQELLEIYAQRAMRQGH 603

Query: 254  PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
              +  G + +++  + P+  TK Q  AI +++ D++ +  M R++ GDVG GKT VA  A
Sbjct: 604  RFSPPGDLYRQLEESFPYDETKGQAKAIDEVIDDLTHEQPMDRLICGDVGYGKTEVAARA 663

Query: 314  MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                +E G Q  I+ P  +LA+QH    ++   +  + +  +        +++ + ++  
Sbjct: 664  AFKVIEDGYQVAILVPTTVLAEQHAATFRERFASFPVEIACLNRFRTVRQQKEIVAQLGA 723

Query: 374  GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            G   +++GTH L    +Q+ KL L+IVDE+HRFGV  + ++ +      VL +TATPIPR
Sbjct: 724  GNIDLVVGTHRLLSKDVQFKKLGLLIVDEEHRFGVAHKERIKKFKATVDVLTLTATPIPR 783

Query: 434  TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            TL ++ LG  D+S I+  P  R+ +KT +   +++  + E +   L  G + +++  +++
Sbjct: 784  TLQMSLLGIRDLSVISTPPQQRRSVKTFLARYDQL-VIREAVLRELERGGQLFFVHNRVQ 842

Query: 494  EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                       +          + I + HG+M+    E VM  F N    +L+ TT+IE 
Sbjct: 843  SIHRMADTIAAQV-------PQARIGVAHGQMAGPQLEDVMVRFINHELDILVCTTIIES 895

Query: 554  GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL 611
            G+D+ +A+ I+I  A+H GLA ++QLRGRVGR    +   LL      L+ ++  RL  L
Sbjct: 896  GLDIPNANTIVINRADHLGLADIYQLRGRVGRAARQAYAYLLVSSLDHLTPDAQQRLRAL 955

Query: 612  KNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             +  +   GF +A  DL+ R  G +LG+ QSG    +     L   LL+    D K 
Sbjct: 956  MDCSELGGGFKLAMNDLQIRGGGNLLGVSQSGHIAAVGYDLYL--ELLQSTVADLKR 1010


>gi|270291823|ref|ZP_06198038.1| transcription-repair coupling factor [Streptococcus sp. M143]
 gi|270279351|gb|EFA25193.1| transcription-repair coupling factor [Streptococcus sp. M143]
          Length = 1167

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 146/452 (32%), Positives = 234/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQHAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQVDILIGTHRVLSKDVVFS 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++           ++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQVYYLYNKVDTID--------QKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|39935729|ref|NP_948005.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            CGA009]
 gi|39649582|emb|CAE28104.1| transcription repair coupling factor [Rhodopseudomonas palustris
            CGA009]
          Length = 1172

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 146/462 (31%), Positives = 235/462 (50%), Gaps = 18/462 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D    S  + R A  +    QIA  L++   +        + ++ ++  +     P+  T
Sbjct: 565  DKLGGSGWQARKAKLKNRIRQIAGELIKVAAERHLREAPKLPIQPQLYDEFCARFPYDET 624

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q +AI   L D+ +   M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA
Sbjct: 625  EDQLAAINAALGDLEKGTPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLA 684

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH +   +  +   + V   +  +      +  + IA G   I++GTHAL   SI++  
Sbjct: 685  RQHAKTFTERFRGFPVNVGQASRLVSAKELSQVKKGIADGTTDIVVGTHALLGKSIKFKD 744

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L LVIVDE+  FGV  + KL Q  +  HVL ++ATPIPRTL L   G  D+S I   P  
Sbjct: 745  LGLVIVDEEQHFGVTHKEKLKQLRSEVHVLTLSATPIPRTLQLAMTGVRDLSIIASPPVD 804

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +A+++ P+I++  E          + L +H 
Sbjct: 805  RLAVRTFVAPHDPL-MIREALLRERYRGGQAFYVVPRIDDLAEVK--------DFLDKHV 855

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M     E +M +F +G   +L++TT++E G+D+ +A+ +I+  A+ FGL
Sbjct: 856  PEMKVAVAHGQMPPAVIEDIMSAFYDGKFDILLSTTIVESGLDIPNANTLIVHRADMFGL 915

Query: 574  AQLHQLRGRVGRGE-EISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
            AQL+QLRGRVGR +    +   L    ++  +  RL VL++ E    GF +A  DL  R 
Sbjct: 916  AQLYQLRGRVGRSKLRAYALFTLPQHNITAQAERRLKVLQSLETLGAGFQLASHDLDIRG 975

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
             G +LG +QSG         EL+  +LE A  + K  +  +P
Sbjct: 976  AGNLLGEEQSGHI--KEVGFELYQQMLEEAITNLKAGIVDEP 1015


>gi|330996173|ref|ZP_08320063.1| transcription-repair coupling factor [Paraprevotella xylaniphila
           YIT 11841]
 gi|329573677|gb|EGG55268.1| transcription-repair coupling factor [Paraprevotella xylaniphila
           YIT 11841]
          Length = 1133

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 136/448 (30%), Positives = 227/448 (50%), Gaps = 20/448 (4%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             R +    ++    I L  +R+Q K       + +  +  ++  +  +  T  Q  A +
Sbjct: 523 KERTKTKIKDIARDLIKLYSLRRQEKG---FAFSPDSFMQHELEASFLYEDTPDQLKATQ 579

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
            +  DM +   M R++ GDVG GKT VA+ A   A     Q  ++ P  +LA QH++   
Sbjct: 580 AVKADMERDRPMDRLVCGDVGFGKTEVAIRAAFKACADNKQVAVLVPTTVLAYQHFQTFS 639

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
              +   + V+ ++     A  +  L+ +A G+ +II+GTH L   S+++  L L+I+DE
Sbjct: 640 SRLKGMPVRVDYLSRARSAAKTKDILKDLADGKINIIVGTHKLIGKSVKFKDLGLLIIDE 699

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + +FGV  + KL Q       L +TATPIPRTL  + +G  D+S I   P  R P++T +
Sbjct: 700 EQKFGVATKEKLRQMKVNVDTLTLTATPIPRTLQFSLMGARDLSVIQTPPPNRYPVQTEV 759

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAII 521
              +  + + E +   +S   + + +  +I         S+ +    LH+H   + + + 
Sbjct: 760 HTFS-AELIAEAVNFEMSRNGQVFIVNNRIS--------SLYDLEALLHKHVPDARVCVG 810

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M   + E ++  F N    +L++TT+IE GID+ +A+ III  A++FGL+ LHQ+RG
Sbjct: 811 HGQMPPEELEKIILGFVNYDYDVLVSTTIIESGIDIPNANTIIINGAQNFGLSDLHQMRG 870

Query: 582 RVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636
           RVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +LG 
Sbjct: 871 RVGRSNKKAFCYLLAPPLAALTPEARRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGA 930

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAK 664
           +QSG    L    E +  +L  A K+ K
Sbjct: 931 EQSGFIADL--GYETYQKILSEAVKELK 956


>gi|124516600|gb|EAY58108.1| transcription-repair coupling factor [Leptospirillum rubarum]
          Length = 1153

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 139/493 (28%), Positives = 240/493 (48%), Gaps = 31/493 (6%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++     E ++  +  L  R+  K   G   + +  + ++   + P+  T  QE 
Sbjct: 553  WNRTRQKVRKEIEKISQDLVDLYARR--KTVSGHSFSADLLLVREFENSFPYDLTPDQED 610

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            A + + +DM     M R++ GDVG GKT +A+ A   AV  G Q  ++ P  +LA+QHYE
Sbjct: 611  AWRAVSEDMEAPTPMDRLILGDVGFGKTEIAMRAAFKAVADGYQVALLVPTTLLAKQHYE 670

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                      + +  I+  + QA  R   ++++ G+  I+IGT AL      +  L L+I
Sbjct: 671  SFLDRFSGFPVRIGHISRMVSQAEIRATRKKLSLGEIDILIGTTALISKETTFRNLGLLI 730

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV Q+ KL  + T+  VL ++ATPIPRTL ++  G   IS I   P GRKPI+
Sbjct: 731  IDEEQRFGVGQKEKLKSRYTSVDVLTLSATPIPRTLQMSLSGLRGISFIMTPPPGRKPIR 790

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T I+  +R   + E +   L+   + ++I  +++                L       I 
Sbjct: 791  TAILTFDR-HRIHEAIDRELARDGQVFFIHNRVQTISRMVHY-----LAKLFPGVP--IG 842

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M D   E VM+ F     ++L++T ++E G+D+  A+ II+  A+ FG+++L+Q+
Sbjct: 843  MAHGQMEDSRMEEVMEKFIQRHYRILVSTAIVESGLDIPAANTIIVNRADMFGISELYQI 902

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR  + +    L      L+  +  RL  L++      G+ IA  D++ R  G +L
Sbjct: 903  RGRVGRSGQQAYAYFLIPSESGLTDTARKRLKTLQDNTSLGSGYQIAMRDMEIRGAGSLL 962

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL--------- 685
            G +Q+G     +   +L+  ++E A +        +P+   +  + +RI L         
Sbjct: 963  GHQQTGHI--ALVGLDLYLEMVEEAIQS-----RIEPEAVPLAREEVRIDLGRESRFPED 1015

Query: 686  YLYQYNEAFQFIR 698
            Y+    +   F R
Sbjct: 1016 YIEHPAQRIDFYR 1028


>gi|325928058|ref|ZP_08189271.1| transcription-repair coupling factor Mfd [Xanthomonas perforans
           91-118]
 gi|325541556|gb|EGD13085.1| transcription-repair coupling factor Mfd [Xanthomonas perforans
           91-118]
          Length = 1110

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 152/495 (30%), Positives = 244/495 (49%), Gaps = 22/495 (4%)

Query: 194 LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
           + +    S     +    P       +WT   R+       +A ++  +    + +   G
Sbjct: 487 VAQLHLISRYSGASAETAPLHSLGGEQWTRAKRKAAEKVRDVAAELLEIQA--RRRARAG 544

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           + + V+  + +      PF  T  Q +AI   L+D+     M R++ GDVG GKT VA+ 
Sbjct: 545 LALQVDRAMYEPFAAGFPFEETGDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVR 604

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           A  AA  A  Q  ++ P  +LA+QHY   +    +  + VE+++        +  LE++A
Sbjct: 605 AAFAAASADKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVA 664

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            G+  +IIGTH L Q  +++  L LV+VDE+ RFGV+Q+  L       H+L +TATPIP
Sbjct: 665 SGEIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIP 724

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL +   G  D+S I   P  R  ++T I   +    + E  +  LS G + Y++   +
Sbjct: 725 RTLNMAMAGLRDLSIIATPPPNRLAVQTFITAWDNT-LLREAFQRELSRGGQLYFLHNDV 783

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E         +    + L     + I I HG+M + + E VM  F+     +L++TT+IE
Sbjct: 784 ESIV-----RMQRDLSELVPE--ARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIE 836

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
            GID+ +A+ III  A+ FGLAQLHQLRGRVGR    +   L+      ++ ++  RL  
Sbjct: 837 SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEA 896

Query: 611 LKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           + + ++   GF +A  DL+ R  GE+LG  QSG          L+  LLE A +  +   
Sbjct: 897 IASMDELGAGFTLATHDLEIRGAGELLGEDQSGQM--AEVGFSLYTELLERAVRSIRQ-- 952

Query: 668 TQDPDLTSVRGQSIR 682
            + PDL +  G+ +R
Sbjct: 953 GKLPDLDA--GEEVR 965


>gi|313832012|gb|EFS69726.1| transcription-repair coupling factor [Propionibacterium acnes
            HL007PA1]
          Length = 1208

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 134/489 (27%), Positives = 228/489 (46%), Gaps = 29/489 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 599  DWRKRKARARKAVREIAAELIKLYAARQA--TKGHAFGPDTAWQRELEGAFAYVETPDQL 656

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +   D+ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 657  TTFADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 716

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        R+ LE +  G   +++GTH L    +++  L LV
Sbjct: 717  QTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEVEFKDLGLV 776

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +      VL M+ATPIPRTL +   G  ++S I   P  R  +
Sbjct: 777  IVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHSV 836

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T   P +   +V+  ++  L+   + ++I  +++  +         +   L     + I
Sbjct: 837  LTFAGPYDE-GQVVAAIRRELAREGQVFYIHNRVQSIE-----KTAAKLRELVPE--ARI 888

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E +M  F      +L+ TT++E GID+  A+ ++I+ A+  GL+QLHQ
Sbjct: 889  VTAHGQMNEKQLEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQ 948

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E      LY    PLS+ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 949  LRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNL 1008

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH------------ILTQDPDLTSVRGQSI 681
            LG +QSG    +     L+  L+  A  + +              L  D +L     ++ 
Sbjct: 1009 LGGEQSGHIADVGFD--LYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETE 1066

Query: 682  RILLYLYQY 690
            R+ L +Y+ 
Sbjct: 1067 RLRLEMYKR 1075


>gi|126729844|ref|ZP_01745657.1| transcription-repair coupling factor [Sagittula stellata E-37]
 gi|126709963|gb|EBA09016.1| transcription-repair coupling factor [Sagittula stellata E-37]
          Length = 1159

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 147/451 (32%), Positives = 232/451 (51%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        ++      +      P+S T
Sbjct: 546 DRLGGGAWQAKKAKLKERIREMADRLIRIAAERALRKAPMLDPPPGAYESFAARFPYSET 605

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q +AI+D++ D+     M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA
Sbjct: 606 DDQLAAIEDVMDDLQSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVIAPTTLLA 665

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY+   +  +   + V  ++  +P     K  E IA G   I IGTHAL   +I++  
Sbjct: 666 RQHYKSFAERFRGFPLEVAALSRFVPAKQAAKTREGIAKGTVDIAIGTHALLAKTIRFQN 725

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+ RFGVQ + +L Q  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 726 LGLLIIDEEQRFGVQHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVD 785

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  V E L      G +++ + P+I +  E            L E  
Sbjct: 786 RLSIRTYVSEFDPV-TVREALLREHYRGGQSFIVVPKITDLPEIE--------EFLKEQV 836

Query: 515 TSSIAII-HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                ++ HG+M+  D +  M++F +G   +L+ATT++E G+D+  A+ +I+  A+ FGL
Sbjct: 837 PECTYVVAHGQMAAGDLDERMNAFYDGKYDVLVATTIVESGLDIPTANTMIVHRADMFGL 896

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN---TEDGFLIAEEDLKQR 628
           +QL+Q+RGRVGR +  + C L   P   L+  +  RL VL        GF +A +DL  R
Sbjct: 897 SQLYQIRGRVGRSKTRAYCYLTTKPRAKLTATAEKRLRVLGAIDMLGAGFSLASQDLDIR 956

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG  +      EL+ S+LE A
Sbjct: 957 GAGNLLGEEQSGQMRD--VGYELYQSMLEEA 985


>gi|312890454|ref|ZP_07749991.1| transcription-repair coupling factor [Mucilaginibacter paludis DSM
           18603]
 gi|311297224|gb|EFQ74356.1| transcription-repair coupling factor [Mucilaginibacter paludis DSM
           18603]
          Length = 1119

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 134/439 (30%), Positives = 219/439 (49%), Gaps = 18/439 (4%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           + +    K + G   + +  +  ++  +  +  T  QE A  D  +DM   + M R++ G
Sbjct: 529 IKLYAVRKAQDGNAFSPDSYLQTELEASFIYEDTPDQEKATVDFKRDMESPHPMDRLICG 588

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT +A+ A   AV    Q  ++ P  ILA QHY+      +     ++ +     
Sbjct: 589 DVGFGKTEIAIRAAFKAVADSKQVAVLVPTTILAAQHYKTFTDRLKGFPCNIDYVNRFKT 648

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               +  L+R+A G+  IIIGTH L    +++  L L+I+DE+ +FGV  + KL      
Sbjct: 649 SKQIKDTLQRLAEGKLDIIIGTHRLVSKDVKFKDLGLMIIDEEQKFGVSTKEKLKAMRVN 708

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVL 479
              L +TATPIPRTL  + +G  D+S I+  P  R+P+ T +   N  D++I E ++  +
Sbjct: 709 VDTLTLTATPIPRTLHFSLMGARDLSIISTPPPNRQPVVTELHVFN--DKLIKEAVEYEI 766

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
               + ++I  ++ +  +            L     + I I HG++   D E VM  F +
Sbjct: 767 DRNGQVFFIHNRVADLPQLGG-----MIKKLVPK--ARIGIAHGQLEGDDLEDVMLKFVS 819

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP- 598
               +L+ATT+IE G+D+ +A+ III  A  FGL+ LHQ+RGRVGR  + + C LL  P 
Sbjct: 820 NEYDVLVATTIIEAGLDIPNANTIIINYAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPL 879

Query: 599 -PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGM---PKFLIAQPEL 651
             L+  +  RLS ++   D   GF +A  DL  R  G +LG +QSG      F +    L
Sbjct: 880 STLTSEARKRLSAIEEFSDLGSGFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKIL 939

Query: 652 HDSLLEIARKDAKHILTQD 670
            +++ E+   + K +   +
Sbjct: 940 DEAIQELKDDEFKGLFKDE 958


>gi|315612154|ref|ZP_07887069.1| transcription-repair coupling factor [Streptococcus sanguinis ATCC
           49296]
 gi|315315715|gb|EFU63752.1| transcription-repair coupling factor [Streptococcus sanguinis ATCC
           49296]
          Length = 1167

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 146/452 (32%), Positives = 234/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQHAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQAETLEKLKNGQVDILIGTHRVLSKDVVFS 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++           ++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQIYYLYNKVDTID--------QKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG  QSG         EL+  LLE A
Sbjct: 965 RGAGNLLGKSQSGFID--SVGFELYSQLLEEA 994


>gi|197105082|ref|YP_002130459.1| transcription-repair coupling factor [Phenylobacterium zucineum HLK1]
 gi|196478502|gb|ACG78030.1| transcription-repair coupling factor [Phenylobacterium zucineum HLK1]
          Length = 1162

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 143/451 (31%), Positives = 235/451 (52%), Gaps = 17/451 (3%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
               AR+  A + L      L+ +  +   +    +     +  +     P+  T+ Q  A
Sbjct: 564  AWQARKARAKERLREMADGLIRIAAERATKATDAVEPPQGVFDEFCARFPYEETEDQLMA 623

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            I D+L+D++    M R++ GDVG GKT VAL A      +G Q  ++AP  +LA+QHY+ 
Sbjct: 624  IGDVLEDLAGGKPMDRLVCGDVGFGKTEVALRAAFVVAMSGQQVAVVAPTTLLARQHYKT 683

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
              +  +   + V  ++  +      +  E +A G+  I++GTHA+    + +  L LVIV
Sbjct: 684  FTERFEGWPVKVRRLSRLVTAKEAAETREGLAKGEVEIVVGTHAILSKQVSFKNLGLVIV 743

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+  FGV+ + KL +     H+L +TATPIPRTL ++  G  ++S I   P  R  ++T
Sbjct: 744  DEEQHFGVKHKEKLKELRADVHLLTLTATPIPRTLQMSLSGIREMSIIATPPVDRLAVRT 803

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519
             I P + +  + E L      G +AY++ P+I +  E      +ERF  L E        
Sbjct: 804  YITPWDPV-VIREALLREKYRGGQAYFVAPRINDLPE------LERF--LREQVPEVKFV 854

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M+    E VM +F +G   +L++TT++E G+D+  A+ +II  A+ FGLAQL+QL
Sbjct: 855  VGHGQMAPTQLEEVMSAFYDGQYDVLLSTTIVESGLDIPTANTLIIHRADMFGLAQLYQL 914

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR +  +   L       ++ ++  RL VL++ ++   GF +A  DL  R  G +L
Sbjct: 915  RGRVGRSKSRAYAYLTTPAEKQITLSAEKRLKVLQSLDNLGAGFQLASHDLDIRGGGNLL 974

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            G +QSG  + +    EL+  +LE A  + K 
Sbjct: 975  GEEQSGHIREI--GVELYQQMLEDAVNELKE 1003


>gi|76797973|ref|ZP_00780232.1| transcription-repair coupling factor [Streptococcus agalactiae
           18RS21]
 gi|76586653|gb|EAO63152.1| transcription-repair coupling factor [Streptococcus agalactiae
           18RS21]
          Length = 727

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 150/452 (33%), Positives = 235/452 (51%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
              D  +    +      E +A  +  L    +  +  G   + +  +      +  +  
Sbjct: 117 TLNDGRFKKAKQRVAKQVEDIADDLLKLYA--ERSQLQGFAFSPDDNMQNDFDNDFAYVE 174

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q  +IK+I QDM     M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 175 TEDQLRSIKEIKQDMEGNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVL 234

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQH+E  K+   N  + V++++    +  +   L+R++ GQ  IIIGTH L    + + 
Sbjct: 235 AQQHFENFKERFSNYPVTVDVLSRFRSKKEQTDTLKRLSKGQVDIIIGTHRLLSQDVVFS 294

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+++DE+ RFGV+ + KL +  T   VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 295 DLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 354

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    V E +   +  G + +++  +++           ++ + L E 
Sbjct: 355 NRYPVQTYVLETN-PGLVREAIIREIDRGGQVFYVYNKVDTID--------QKVSELQEL 405

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HG+MS+I  E+ +  F NG   +L+ATT+IE G+D+ + + + +ENA+H G
Sbjct: 406 VPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENADHMG 465

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
           L+ L+QLRGRVGR   I+   L+Y P   L++ S  RL  +K       GF IA  DL  
Sbjct: 466 LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEISEKRLDAIKGFTELGSGFKIAMRDLSI 525

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G ILG  QSG         E++  LLE A
Sbjct: 526 RGAGNILGASQSGFID--SVGFEMYSQLLEQA 555


>gi|212702598|ref|ZP_03310726.1| hypothetical protein DESPIG_00624 [Desulfovibrio piger ATCC 29098]
 gi|212674039|gb|EEB34522.1| hypothetical protein DESPIG_00624 [Desulfovibrio piger ATCC 29098]
          Length = 1192

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 148/486 (30%), Positives = 242/486 (49%), Gaps = 24/486 (4%)

Query: 223  PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
              + R A +++ A  + +   RK  K       +  G++  +      F  T  Q  AI+
Sbjct: 598  KEKVRKAIEKIAADLVEMYAYRKVAKG---FRYDPPGELYHEFEATFGFEETPDQARAIE 654

Query: 283  DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
            D+L DM +   M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QHY+  +
Sbjct: 655  DVLADMDKSEPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQHYQTFR 714

Query: 343  KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
                   + V +++  +P+A +++ L+  A GQ  I++GTH L    +    L L+I+DE
Sbjct: 715  ARLAGFPVTVGLLSRFVPRARQKEVLKAAAEGQIDILLGTHRLLSSDVSLPNLSLLILDE 774

Query: 403  QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            + RFGV+ + KL        VL +TATPIPRTL L+  G  D+S I   P  RKP+ T +
Sbjct: 775  EQRFGVRHKEKLKALKKNVDVLTLTATPIPRTLQLSMSGIRDLSVIETAPQDRKPVATAV 834

Query: 463  IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAI 520
            +  +    +   L+  L+   + +W+  +++          +ER          T+ + +
Sbjct: 835  LRRDD-ATLRTVLERELAREGQVFWVYNRVQ---------GLERVAEYVRKLVPTARVGM 884

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+MS+ + ES M  F +G   +L+ T ++E G+D   A+ ++++ A+ FGL QL+QLR
Sbjct: 885  AHGQMSESELESNMHKFWHGELDVLVCTAIVESGLDFPRANTLVVDQAQLFGLGQLYQLR 944

Query: 581  GRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
            GRVGR +  +    +      LS+ +  RL ++ + +    GF +A EDL+ R  G ILG
Sbjct: 945  GRVGRSDRQAYAFFVVPDTEHLSEVAEERLRIIMDMDYLGAGFQVAMEDLRLRGAGNILG 1004

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAKHI-LTQDPDLTSVRGQSIRI-LLYLYQYNEA 693
              QSG         +L+  +LE A    K   +TQD +     G    I   Y+    E 
Sbjct: 1005 EVQSGHMG--RVGLDLYLEMLEEAVARLKGTPVTQDVETELNLGLPAHIPQSYIEDGRER 1062

Query: 694  FQFIRA 699
             +  +A
Sbjct: 1063 LRCYKA 1068


>gi|170289131|ref|YP_001739369.1| DEAD/DEAH box helicase domain-containing protein [Thermotoga sp.
           RQ2]
 gi|170176634|gb|ACB09686.1| DEAD/DEAH box helicase domain protein [Thermotoga sp. RQ2]
          Length = 893

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 144/488 (29%), Positives = 259/488 (53%), Gaps = 22/488 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++     E    ++  L M++Q  + + +P   + ++ +K   + P+  T  Q+ 
Sbjct: 321 WKQTLKKVREDIEKKIRELVELYMKRQEAQGLSLP--GDPELEEKFAESFPYIETPDQQQ 378

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           +I++++ D++ +  M R+L GD G GKT VAL A   AV +G Q  ++ P  +LA+QHYE
Sbjct: 379 SIEEVMSDLASEKPMDRLLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVLARQHYE 438

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  +   + VE++  +     +++ +E++  G+  IIIGTH+L  + I++  L LVI
Sbjct: 439 NFKERMETFGVKVELLDSSRTAREKKEIIEKLKKGEIDIIIGTHSLLNERIEFSDLGLVI 498

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV+Q+ +  +   + +VL ++ATPIPRTL +   G  D S I   P GRKP+ 
Sbjct: 499 IDEEQKFGVEQKERFKKLRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVY 558

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
             +   +  D V   +   ++ G +  ++  ++EE          E F  L   F    I
Sbjct: 559 VYVAEYSD-DLVKGAVIREINRGGQVIYVHNRVEEL--------PEVFEKLKRMFPELEI 609

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+ HG+MS    E ++  F  G   +L+ TT+IE G+D+ +A+ +I+++A  +GL+QL+Q
Sbjct: 610 AVAHGKMSRRAMERIVHEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLSQLYQ 669

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
           LRGRVGR +  +    LY     +++  RL VLK+      G  IA +D++ R  G++LG
Sbjct: 670 LRGRVGRSDRRAFAYFLYPKGTPRSALERLKVLKSYTGFGSGLQIALKDMELRGVGDVLG 729

Query: 636 IKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQDP---DLTSVRGQSIRILLYLYQY 690
           ++Q G    +    +L++ +L+  I R   + I  +     ++ +  G+      Y+   
Sbjct: 730 LEQHG--NVVSVGLKLYNEILKETITRFKERRIEKKHSVNVEIENPPGRFFIPEDYVQNP 787

Query: 691 NEAFQFIR 698
            E  +  R
Sbjct: 788 VERLRLYR 795


>gi|91977093|ref|YP_569752.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            BisB5]
 gi|91683549|gb|ABE39851.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            BisB5]
          Length = 1172

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 149/462 (32%), Positives = 236/462 (51%), Gaps = 21/462 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D    S  + R A  +    QIA  L++   +        + VE  +  +     P+  T
Sbjct: 565  DKLGGSGWQARKAKLKNRIRQIAGELIKVAAERHLREAPKLQVEPHLYDEFCARFPYDET 624

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q +AI   L D+ +   M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA
Sbjct: 625  EDQLAAINAALGDLGRGMPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLA 684

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH +      +   + V   +  +      +  + IA GQ  I++GTHAL   +I++  
Sbjct: 685  RQHAKTFADRFRGFPVNVGQASRLVSPKELTQVKKGIADGQIDIVVGTHALLGKAIKFKD 744

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L LV+VDE+  FGV  + +L Q     HVL ++ATPIPRTL L   G  D+S I   P  
Sbjct: 745  LGLVVVDEEQHFGVTHKERLKQLRAEVHVLTLSATPIPRTLQLAMTGVRDLSIIASPPVD 804

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +A+++CP+I++  E          + L +H 
Sbjct: 805  RLAVRTFVAPHDPL-MIREALLRERYRGGQAFYVCPRIDDLAEVK--------DFLDKHV 855

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M     E +M +F +G   +L++TT++E G+D+  A+ +II  A+ FGL
Sbjct: 856  PEMKVAVAHGQMPPTVIEDIMSAFYDGKYDILLSTTIVESGLDIPTANTLIIHRADMFGL 915

Query: 574  AQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  ++ +  L   P    ++  +  RL VL++ E    GF +A  DL  
Sbjct: 916  AQLYQLRGRVGRS-KLRAYALFTLPSQHKITPQAERRLKVLQSLETLGAGFQLASHDLDI 974

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            R  G +LG +QSG         EL+ S+LE A  + K  +++
Sbjct: 975  RGAGNLLGEEQSGHI--KEVGFELYQSMLEEAITNLKAGVSE 1014


>gi|149186684|ref|ZP_01864995.1| transcription-repair coupling factor [Erythrobacter sp. SD-21]
 gi|148829592|gb|EDL48032.1| transcription-repair coupling factor [Erythrobacter sp. SD-21]
          Length = 1163

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 157/497 (31%), Positives = 244/497 (49%), Gaps = 32/497 (6%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKK 249
            D+L +    S  EA  +        D       ++R A  +    +IA  LM+   Q   
Sbjct: 534  DVLSRYG--SSEEAVML--------DRLGGEAWQKRRARLKERIREIAGELMQVAAQRAL 583

Query: 250  EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
            +    + V+     + L    +  T  Q+ AI D+L D+     M R++ GDVG GKT V
Sbjct: 584  KKAPVLEVDEPTYNQFLDRFQYEETDDQDRAIADVLSDLESGKPMDRLVCGDVGFGKTEV 643

Query: 310  ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            AL A   A     Q  ++AP  +LA+QH+E  ++      + V  ++  +P    ++  E
Sbjct: 644  ALRAAFVAAMNSQQVAVVAPTTLLARQHFENFRQRFSGFPLTVGRLSRLVPAKELKETRE 703

Query: 370  RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             +A G   I++GTHA+     ++ +L LVIVDE+ RFGV  + KL Q     H+L +TAT
Sbjct: 704  GLAKGDVDIVVGTHAILSKQTKFKELGLVIVDEEQRFGVTHKEKLKQLRADVHMLTLTAT 763

Query: 430  PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            PIPRTL +   G  ++S I   P  R  ++T ++  + +  + E L      G +++ + 
Sbjct: 764  PIPRTLQMAMTGLRELSTIQTPPVDRLAVRTYVMEWDDM-VMREALLREHHRGGQSFIVV 822

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            P+I + +  +        + LHE+         HG+M   + E  M +F  G   +L+AT
Sbjct: 823  PRISDMEAIS--------DWLHENVPEVKFVAAHGQMGAGEIEERMSAFYEGKYDVLLAT 874

Query: 549  TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYT 606
            T++E G+D+  A+ III  A+ FGLAQL+QLRGRVGR +  +   L Y     LS+ +  
Sbjct: 875  TIVESGLDLPSANTIIIHRADIFGLAQLYQLRGRVGRSKLRAYAYLTYEKDVALSEVAEK 934

Query: 607  RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
            RL VL + +    GF +A  DL  R  G +LG +QSG         EL+ S+LE A   A
Sbjct: 935  RLKVLGDLDSLGAGFQLASHDLDIRGAGNLLGDEQSGHI--REVGFELYQSMLEDAILAA 992

Query: 664  KH---ILTQDPDLTSVR 677
            K     L   P+  S +
Sbjct: 993  KAGELGLEAKPETVSPQ 1009


>gi|218283272|ref|ZP_03489327.1| hypothetical protein EUBIFOR_01916 [Eubacterium biforme DSM 3989]
 gi|218215962|gb|EEC89500.1| hypothetical protein EUBIFOR_01916 [Eubacterium biforme DSM 3989]
          Length = 1131

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 235/449 (52%), Gaps = 19/449 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +     E +A ++  L  ++    +IG   + +  + ++      +  T  Q  
Sbjct: 537 WKKTKEKVSKKVEEIAARLVELYAKRNE--DIGFAFSKDDDLQKEFEDAFEYEATPDQIR 594

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A ++I ++M +   M  +L GDVG GKT VA+ A   A+    Q  ++ P  IL+ QHY+
Sbjct: 595 ATEEIKREMEKPKPMDHLLCGDVGFGKTEVAMRAAFKAISNNKQVALLCPTTILSMQHYQ 654

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K  +N    + ++   +      +  + +  GQ  IIIGTH L   S QY  L L+I
Sbjct: 655 TFVKRFENVGANIRVVNRFVATKEINQIKKELEAGQVDIIIGTHKLLNKSFQYKNLGLLI 714

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+ + ++ +   A  VL ++ATPIPRTL ++ +G   IS++   P  R PI+
Sbjct: 715 IDEEQRFGVEHKERIKEMKNAIDVLSLSATPIPRTLQMSLIGVRTISQLNTPPLHRHPIQ 774

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSI 518
           T ++  NR   V E ++  LS G + +++   +         ++     ++   F  + +
Sbjct: 775 TYVME-NRKSVVKEIIQRELSRGGQVFYLYNHVS--------NIYSVAKNIQNMFPDAKV 825

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+ HGRM   D E  M  F+    ++L+ TT+IE G+D+ +A+ +II++A+ FGL+QL+Q
Sbjct: 826 AVAHGRMEKNDIEQTMIDFEQEKYQILVCTTIIETGLDIANANTMIIDDADRFGLSQLYQ 885

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           +RGRVGR E+I+ C LL  P   L++ ++ RL  +K       G+ +A  DL  R  G++
Sbjct: 886 IRGRVGRREKIAYCYLLVQPQKELTEQAHKRLKAIKEFTSLGSGYKVAMRDLTIRGAGDM 945

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           LG +Q+G         +L+  +L  A K+
Sbjct: 946 LGPQQAGFIDD--VGLDLYLEMLASAIKE 972


>gi|332880692|ref|ZP_08448365.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332681326|gb|EGJ54250.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 1133

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 228/448 (50%), Gaps = 20/448 (4%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             R +    ++    I L  +R+Q K       + +  +  ++  +  +  T  Q  A +
Sbjct: 523 KERTKTKIKDIARDLIKLYSLRRQEKG---FAFSPDSFMQHELEASFLYEDTPDQLKATQ 579

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
            +  DM +   M R++ GDVG GKT VA+ A   A     Q  ++ P  +LA QH++   
Sbjct: 580 AVKADMERDRPMDRLVCGDVGFGKTEVAIRAAFKACADNKQVAVLVPTTVLAYQHFQTFS 639

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
              +   + V+ ++     A  ++ L  +A G+ +II+GTH L   S+++  L L+I+DE
Sbjct: 640 SRLKGMPVRVDYLSRARSAAKTKEILRDLADGKINIIVGTHKLIGKSVKFKDLGLLIIDE 699

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + +FGV  + KL Q       L +TATPIPRTL  + +G  D+S I   P  R P++T +
Sbjct: 700 EQKFGVATKEKLRQMKVNVDTLTLTATPIPRTLQFSLMGARDLSVIQTPPPNRYPVQTEV 759

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAII 521
              +  + + E +   +S   + + +  +I         S+ +    LH+H   + + + 
Sbjct: 760 HTFS-AELIAEAVNFEMSRNGQVFIVNNRIS--------SLYDLEALLHKHVPDARVCVG 810

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M   + E+++  F +    +L++TT+IE GID+ +A+ III  A++FGL+ LHQ+RG
Sbjct: 811 HGQMPPEELENIIFGFVHYDYDVLVSTTIIESGIDIPNANTIIINGAQNFGLSDLHQMRG 870

Query: 582 RVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636
           RVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +LG 
Sbjct: 871 RVGRSNKKAFCYLLAPPLAALTPEARRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGA 930

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAK 664
           +QSG    L    E +  +L  A K+ K
Sbjct: 931 EQSGFIADL--GYETYQKILSEAVKELK 956


>gi|42525214|ref|NP_970594.1| transcription-repair coupling factor [Bdellovibrio bacteriovorus
            HD100]
 gi|39577425|emb|CAE81248.1| transcription-repair coupling factor [Bdellovibrio bacteriovorus
            HD100]
          Length = 1172

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 139/467 (29%), Positives = 229/467 (49%), Gaps = 17/467 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W     +  ++   +A  +  L  ++         I  +           P+  T  Q  
Sbjct: 584  WEKTKAKVKSHVRDIAADLLTLYAKRAEMHRPAFVIKED--EVLMFENGFPYEETDDQLR 641

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI DI +D+     M R++ GDVG GKT VA+ A   A++A  Q  ++AP  +L  QH+E
Sbjct: 642  AINDIRKDLKSTKPMDRLVCGDVGFGKTEVAMRAAFFAIQARKQVAVLAPTTVLTFQHFE 701

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              KK  +   + + ++   +  A  +K L+ +  G+  +I+GTH L   SI Y  L L+I
Sbjct: 702  TFKKRFEGWPVDIRVLNRFVTPAEVKKTLQDLKDGKVDLIVGTHKLLGSSIAYKDLGLLI 761

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ +FGV  + K+ +  T+   L ++ATPIPRTL +  +G  D+S I   P  R P +
Sbjct: 762  IDEEQKFGVTHKEKIKKIKTSVDTLTLSATPIPRTLNMALVGIRDLSLINTAPVDRLPTR 821

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +  + + + +   +S G + Y+I  +IE         +V+    +     + I 
Sbjct: 822  TFVTKFD-PETIRKAITAEISRGGQVYFIHNRIESIY-----GLVDEIRQIVPE--ARIR 873

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M + + E  M +F +    +L+ T ++E G+DV  A+ + I+ A  FGL+QL+QL
Sbjct: 874  VAHGQMEEHELEKAMLAFFHHEIDVLVCTAIVESGMDVPRANTMFIDTAHLFGLSQLYQL 933

Query: 580  RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR +  + C L+   +  L K    RL +++       G  IA+ DL+ R  G IL
Sbjct: 934  RGRVGRSKTRAYCYLMMPRNHKLDKEQQERLKIIQENTALGSGIKIAQYDLELRGSGNIL 993

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
            G +QSG         E++  LL  A  +AK    +D DL       I
Sbjct: 994  GEEQSGHVN--SVGYEMYMDLLNEALAEAKGESVEDMDLDPELNLKI 1038


>gi|326387814|ref|ZP_08209420.1| transcription-repair coupling factor [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207860|gb|EGD58671.1| transcription-repair coupling factor [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 1161

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 158/482 (32%), Positives = 240/482 (49%), Gaps = 29/482 (6%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKK 249
           D+L +    S   A           D       ++R A       ++A  LM    Q   
Sbjct: 535 DVLSRYGHESDGVAL----------DRLGGEAWQKRKARLRERILEMAGQLMATAAQRAL 584

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
               P+  +       +   P++ T+ QE AI+D+L DM+    M R++ GDVG GKT V
Sbjct: 585 RQADPLETDPASYGPFVDRFPWNETEDQERAIEDVLGDMASGKPMDRLVCGDVGFGKTEV 644

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           AL A   A  AG Q  ++AP  +LA+QHY    +      + +  ++  +P     +   
Sbjct: 645 ALRAAFVAAMAGHQVAVVAPTTLLARQHYTSFVERFSGFPLQIGRLSRLVPAKEAAETRS 704

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +A+G   I+IGTHAL   ++++ +L LVIVDE+ RFGV  + KL +  T  HVL +TAT
Sbjct: 705 GLANGTVDIVIGTHALLSKTVEFRRLGLVIVDEEQRFGVTHKEKLKELKTDVHVLTLTAT 764

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL +   G  ++S I   P  R  ++T ++P + +  + + L      G +++ + 
Sbjct: 765 PIPRTLQMAMSGLRELSTIQTPPVDRLAVRTYVMPWDDV-VIRDALLREHQRGGQSFIVV 823

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P+I +  E            L  +         HG+MS  D E  M +F +   ++L++T
Sbjct: 824 PRIADMPEME--------EWLRLNVPEIRAVSAHGQMSSSDVEDRMSAFYDKKYEVLLST 875

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYT 606
           T+IE GID+  A+ II+  A+ FGLAQL+QLRGRVGRG+  +   L Y     LS+ +  
Sbjct: 876 TIIESGIDIPSANTIILHRADRFGLAQLYQLRGRVGRGKLRAYAYLTYPENQALSEIAEK 935

Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           RL VL + +    GF +A  DL  R  G +LG +QSG         EL+ S+LE A   A
Sbjct: 936 RLKVLGDLDSLGAGFQLASHDLDLRGAGNLLGDEQSGHI--KEVGFELYQSMLEDAILAA 993

Query: 664 KH 665
           K 
Sbjct: 994 KA 995


>gi|329889842|ref|ZP_08268185.1| transcription-repair-coupling factor [Brevundimonas diminuta ATCC
           11568]
 gi|328845143|gb|EGF94707.1| transcription-repair-coupling factor [Brevundimonas diminuta ATCC
           11568]
          Length = 744

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 144/459 (31%), Positives = 232/459 (50%), Gaps = 19/459 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +   +       +A  +  L  ++  +      I     +  +     P+  T  Q +
Sbjct: 147 WQARKAKAKERLRAMAEGLIALAAKRALRVSD--AITPPAGLFDEFCARFPYEETDDQLN 204

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI D+L+D+ +   M R++ GDVG GKT VAL A       G Q  I+ P  +LA+QH++
Sbjct: 205 AIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVCPTTLLARQHFK 264

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +      I V  ++  +      +    +  G   I++GTHA+  D + +  L LVI
Sbjct: 265 TFSERFAGWPIKVRHLSRMVTAKDANETRAGLKDGSFEIVVGTHAVLADQVGFKDLGLVI 324

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+  FGV+ + KL       H+L +TATPIPRTL +   G  ++S I   P  R  ++
Sbjct: 325 VDEEQHFGVKHKEKLKSLRADVHLLTLTATPIPRTLQMALSGIREMSIIATPPVDRLAVR 384

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T + P + +  V E L      G +AY++ P++++  +      +ERF  L E       
Sbjct: 385 TYVTPWDPV-LVREALLREKYRGGQAYYVAPRLKDLPD------IERF--LREQVPEVKF 435

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+MS    E+VM +F +G   +L++TT++E GID+  A+ +++  A+ FGLAQLHQ
Sbjct: 436 VVGHGQMSPTQLEAVMSAFYDGEYDVLVSTTIVESGIDIPTANTLVVHRADMFGLAQLHQ 495

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           +RGR+GR +  +   L   P  PLS ++  RL VL++ ++   GF +A  DL QR  G +
Sbjct: 496 IRGRIGRSKARAFAYLTTDPTKPLSLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNL 555

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           LG +QSG         EL+  +LE A  + +      PD
Sbjct: 556 LGDEQSGHI--REVGVELYQQMLEDAVAELREQGEAAPD 592


>gi|256028682|ref|ZP_05442516.1| transcription-repair coupling factor [Fusobacterium sp. D11]
 gi|289766594|ref|ZP_06525972.1| transcription-repair coupling factor [Fusobacterium sp. D11]
 gi|289718149|gb|EFD82161.1| transcription-repair coupling factor [Fusobacterium sp. D11]
          Length = 963

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 143/460 (31%), Positives = 251/460 (54%), Gaps = 12/460 (2%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             ++    +++      ++ ++ +     G   + +  + ++     PF+ T +Q  AI+
Sbjct: 390 KRKKAKLSEDIEIFAKEIIKIQAKRNLGNGFKFSKDTVMQEEFEETFPFTETPAQLKAIE 449

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           D+ +DM     M R++ GDVG GKT VA+ A   AV  G Q +++ P  +LA+QHYE   
Sbjct: 450 DVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDGKQVILLVPTTVLAEQHYERFS 509

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D I++  + L+I+DE
Sbjct: 510 ERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDDIKFKDVGLLIIDE 569

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I   P GR+ I T  
Sbjct: 570 EQKFGVKAKEKLKKIKGDIDVLTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIHTEY 629

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
           I  N+ + + + +   +S   + ++I   ++  +     S V+    L   +   +  IH
Sbjct: 630 IDNNK-NLIKDIILSEISREGQVFYIFNSVKRIE-----SKVKEIRELLPEYI-KVDYIH 682

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +IIE  E  GL+Q++QLRGR
Sbjct: 683 GQMLPRDIKKNIQEFENGNIDVLVATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGR 742

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDLKQRKEGEILGIKQSG 640
           +GR  + S C +L +   +KN+  R   ++  ++  G  +A ED K R  GEILG KQ G
Sbjct: 743 IGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGLDLAMEDSKIRGVGEILGEKQHG 802

Query: 641 MPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
             +   + +    L++ +L++  +  + +   D +L   R
Sbjct: 803 AVETFGYNLYMKMLNEEILKLKGEAEEELDDVDVELNFPR 842


>gi|329954432|ref|ZP_08295523.1| transcription-repair coupling factor [Bacteroides clarus YIT 12056]
 gi|328527400|gb|EGF54397.1| transcription-repair coupling factor [Bacteroides clarus YIT 12056]
          Length = 1157

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 227/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 542 WEKLKDRTKTKIKDIARDLIKLY--SQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSK 599

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 600 ATADVKADMESARPMDRLVCGDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQ 659

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  +     VE ++     A  +  ++ +A G+ +I+IGTH +    +++  L L+I
Sbjct: 660 TFKERLKGLPCRVEYLSRARTAAQAKAVVKGLADGEVNILIGTHRILGKDVKFKDLGLLI 719

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 720 IDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 779

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +  D + + +   +S   + +++  +I    E   ++++ER           + 
Sbjct: 780 TEVHTFSD-DIITDAINFEMSRNGQVFFVNNRISNLSE--LKAMIER-----NIPDCRVC 831

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 832 IGHGQMEPAELEKIILDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 891

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 892 RGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 951

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 952 GAEQSGFIADL--GYETYQKILSEAVHELK 979


>gi|283850616|ref|ZP_06367903.1| transcription-repair coupling factor [Desulfovibrio sp. FW1012B]
 gi|283573859|gb|EFC21832.1| transcription-repair coupling factor [Desulfovibrio sp. FW1012B]
          Length = 1150

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 147/523 (28%), Positives = 243/523 (46%), Gaps = 29/523 (5%)

Query: 188  WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER-LAYDELLAGQIALLLMRKQ 246
            ++  D   +       +    I  P            RER     E +A  +  +   +Q
Sbjct: 524  YLPAD---RLGLMQRYKGPEGISPPLDRLGGARWKSVRERAKKAIERIAADLVEMYAYRQ 580

Query: 247  FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
                 G       ++  +      F  T  QE AI ++L DM +   M R++ GDVG GK
Sbjct: 581  VA--KGYAYGPTNELYLEFEATFGFEETPDQEKAIAEVLADMERPEPMDRLVCGDVGFGK 638

Query: 307  TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
            T VAL A   AV  G Q  ++ P  +LA+QHY+      +   + VE+++  +    R+ 
Sbjct: 639  TEVALRAAFRAVLDGKQVAMLCPTTVLAEQHYQNFAARLEGFPVRVEMLSRFVSPKRRKV 698

Query: 367  ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             LE +A G+  I+IGTH +    +    + L+I+DE+ RFGV+ + +L         L +
Sbjct: 699  VLESVARGEVDILIGTHRILSADVTIPNIGLLILDEEQRFGVKHKERLKAFKKNIDALTL 758

Query: 427  TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKK 484
            TATPIPRTL L+  G   +S I   PA RK ++T ++     DE    E L+  L    +
Sbjct: 759  TATPIPRTLQLSLSGVRGLSVIETPPAERKTVETALV---ERDEAFLKEVLRRELERQGQ 815

Query: 485  AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             +W+  +++  +  +  + V+          + +A+ HG+MS+   E  M  F +G   +
Sbjct: 816  VFWVHNRVQGLE--DVAAFVKTLA-----PEAKVAMAHGQMSETALEEAMHGFWHGETDI 868

Query: 545  LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH-----PP 599
            L+ T++IE G+D   A+ ++++NA  FGL QL+QLRGRVGR    +    +       P 
Sbjct: 869  LVCTSIIESGLDFPRANTLVVDNAHMFGLGQLYQLRGRVGRSPRQAYAYFVVPSIEKVPE 928

Query: 600  LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            L++     +  +     GF +A EDL+ R  G ILG  QSG    +     L + L E  
Sbjct: 929  LARKRLRVILDMDYLGAGFQVAMEDLRLRGAGNILGEAQSGHIARIGLDMFL-EMLAEEV 987

Query: 660  RKDAKHILTQ--DPDLTSVRGQSIRI-LLYLYQYNEAFQFIRA 699
             +     + +  +P+LT   G   RI   Y+ + ++  +  +A
Sbjct: 988  GRLKGEPVKERTEPELT--LGIPARIPERYVPEASDRLRLYKA 1028


>gi|283768627|ref|ZP_06341539.1| transcription-repair coupling factor [Bulleidia extructa W1219]
 gi|283105019|gb|EFC06391.1| transcription-repair coupling factor [Bulleidia extructa W1219]
          Length = 1142

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 127/454 (27%), Positives = 237/454 (52%), Gaps = 21/454 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
           D+E T    ++   +         L +    ++ IG   + + +  +K     P+  T+ 
Sbjct: 543 DWEKTKTKLQKNVEEVATRL----LNLYSSREQHIGYAFSKDTEETKKFEDAFPYDLTED 598

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+ A+ +I +DM     M R+L GDVG GKT V++ A   AV    Q V++ P  ILA+Q
Sbjct: 599 QKKAMVEIKKDMESSKPMDRLLCGDVGFGKTEVSIRASFKAVIDHKQVVVLCPTTILAEQ 658

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+   K   ++  + +E++   + +  +++ LE +  G   I+IGTH +    + +  L 
Sbjct: 659 HFSTFKNRYKDFAVRIEVLDRFVQKDKQQEILEDLEKGNVDILIGTHRVLSKDVHFKDLG 718

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+++DE+HRFGV+ + K+ +      VL ++ATPIPRTL ++ +G   +S++   P  R 
Sbjct: 719 LLVIDEEHRFGVEHKEKIKELRNGVDVLALSATPIPRTLQMSLIGVRSLSQLETPPLNRY 778

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT- 515
            ++T ++  N+   +++ ++  LS   + +++   IE         +  R  +L +    
Sbjct: 779 SVQTYVVEKNQ-ALIVDAIQKELSRKGQVFYLYNNIE--------FIYNRARTLQKELPD 829

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + I ++HG++   + E +M  F +    +L+ TT+IE GID+ + + I+IE+A++FGL+Q
Sbjct: 830 ARIGVVHGKLGRDEIEDIMWRFNHQEIDILVTTTIIENGIDIPNVNTILIEDAQNFGLSQ 889

Query: 576 LHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKE 630
           ++Q++GRVGR   ++   LL      LS+ +  RL  +K       G+ +A  DL  R  
Sbjct: 890 IYQMKGRVGRSNRLAYAYLLIPNRKQLSEVAQKRLQAVKEFAKLGSGYKVAMRDLTIRGA 949

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G++LG  QSG         + +  +LE A +  +
Sbjct: 950 GDLLGSSQSGFIDT--VGIDFYIEMLEAAIEAKR 981


>gi|154253521|ref|YP_001414345.1| transcription-repair coupling factor [Parvibaculum lavamentivorans
            DS-1]
 gi|154157471|gb|ABS64688.1| transcription-repair coupling factor [Parvibaculum lavamentivorans
            DS-1]
          Length = 1171

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 142/476 (29%), Positives = 235/476 (49%), Gaps = 29/476 (6%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKK 249
            +LL +     +              D    +  + R A  +    ++A  L++     + 
Sbjct: 548  ELLSRYGSDDLDAQL----------DRLGGTGWQARKARLKERIREMAGELIKIAAAREL 597

Query: 250  EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
            +    +  +     +     PF+ T+ QE AI  +L+D+++   M R++ GDVG GKT V
Sbjct: 598  KTAPAMEPQPGAYDEFCARFPFTETEDQEQAIDAVLEDLARGRPMDRLVCGDVGFGKTEV 657

Query: 310  ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            AL +   A  AG Q  ++ P  +LA+QHY       Q   + V  ++  +      +A E
Sbjct: 658  ALRSAFVAALAGFQVAVVVPTTLLARQHYRTFAARFQGLPVRVRQMSRLVSAKDMAEAKE 717

Query: 370  RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             +A GQ  I+IGTHAL    +++  L LVIVDE+  FGV  + +L +     HVL +TAT
Sbjct: 718  GLASGQVDIVIGTHALLGKQVKFRNLGLVIVDEEQHFGVVHKEQLKKLRAEVHVLTLTAT 777

Query: 430  PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            PIPRTL L   G  ++S I   P  R  ++T + P + +  V E L      G +++++ 
Sbjct: 778  PIPRTLQLALSGVRELSLIATPPVDRLAVRTYVSPFDPV-VVREALLREHFRGGQSFYVV 836

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            P+I +  E+           L ++       + HG+M+  + E  M +F +G   +L++T
Sbjct: 837  PRIADLAEAE--------EFLRQYVPEVKFVLAHGQMAAGEIEDKMTAFYDGKYDVLVST 888

Query: 549  TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYT 606
            T++E G+D+  A+ +++  A+ FGL+QL+QLRGRVGR +  +   L       L+  +  
Sbjct: 889  TIVESGLDIPTANTLVVHRADMFGLSQLYQLRGRVGRSKARAYAYLTVPANRTLTAGADK 948

Query: 607  RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            RL VL++ +    GF +A  DL  R  G +LG +QSG         EL+  +LE A
Sbjct: 949  RLRVLQSLDSLGAGFSLASHDLDIRGAGNLLGDEQSGHI--KEVGYELYQEMLEEA 1002


>gi|218295465|ref|ZP_03496278.1| transcription factor CarD [Thermus aquaticus Y51MC23]
 gi|218244097|gb|EED10623.1| transcription factor CarD [Thermus aquaticus Y51MC23]
          Length = 699

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 153/498 (30%), Positives = 244/498 (48%), Gaps = 19/498 (3%)

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            L  +  P +        +P +       EW     +     E LA ++ +L  +++   
Sbjct: 83  YLPVEGLPLLKRHPGTTDDPPELSSLGKGEWQRAKEKARKDVEELAARLLVLHAKRKATP 142

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
               P   E      +    P   T  Q  A++++L+D+   + M R++ GDVG GKT V
Sbjct: 143 GRAFPALPEWDPL--VEAGFPHELTPDQRQALEEVLRDLESPHPMDRLVSGDVGFGKTEV 200

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           AL A    V  G Q   + P  +LA+QH    ++  +   + VE+++   P       L+
Sbjct: 201 ALRAAHRVVGHGAQVAFLVPTTLLAEQHGRTFRERFRGLPVRVEVLSRFTPPKEEGAILK 260

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +  G+  I+IGTH L Q  + +  L L+IVDE+HRFGV Q+ ++ +       L ++AT
Sbjct: 261 DLKEGRVDIVIGTHRLLQPDVAFKDLGLLIVDEEHRFGVAQKERIRELKENVDTLYLSAT 320

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL    +G  D+S I   P GRKPIKT + P + +  V E +   L  G KA+++ 
Sbjct: 321 PIPRTLYSALVGLKDLSSIKTPPPGRKPIKTFLAPFDPL-LVREAILNELERGGKAFYVH 379

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            ++   +             L     + I ++HG+M +   E  M  F  G   +L+ATT
Sbjct: 380 HRVASIEARRRY-----LEDLVPE--ARIGVVHGQMPEGLIEETMMLFAEGAYDVLLATT 432

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +IE G+DV +A  I+IE A+  GLA L+QLRGRVGR ++ +   L + P L++ +  RL 
Sbjct: 433 IIEAGLDVPEAGTILIERADLLGLATLYQLRGRVGRRDQEAYAYLFHPPRLTEAAEKRLH 492

Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA-RKDAKH 665
            + +  D   G L+AE+D++ R  G +LG +Q G         E++  LLE A RK    
Sbjct: 493 AIADLSDLGSGHLLAEKDMEIRGVGNLLGPEQHGHI--RALSLEVYTELLEEALRKLKGE 550

Query: 666 ILTQDPDLTSVRGQSIRI 683
            + + P +T     S R+
Sbjct: 551 RVEERPHVTLDLALSARL 568


>gi|239917090|ref|YP_002956648.1| transcription-repair coupling factor Mfd [Micrococcus luteus NCTC
            2665]
 gi|281414448|ref|ZP_06246190.1| transcription-repair coupling factor [Micrococcus luteus NCTC 2665]
 gi|239838297|gb|ACS30094.1| transcription-repair coupling factor Mfd [Micrococcus luteus NCTC
            2665]
          Length = 1218

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 143/483 (29%), Positives = 235/483 (48%), Gaps = 17/483 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +       +AG++  L          G     +     ++    PF  T  Q 
Sbjct: 619  DWAQTKSKAKRATREIAGELIRLY--SARMASRGHAFAPDTPWQAELEEAFPFIETPDQL 676

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I+D+ +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LA+QH+
Sbjct: 677  TTIEDVKKDMEEAVPMDRLVSGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPTTLLARQHH 736

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +          + V  ++        ++ +E +AHG+  ++IGTH L  D +Q+  L LV
Sbjct: 737  QTFSDRFAGFPVKVAALSRFQTAKESKEVVEGLAHGEVDVVIGTHRLLSDQVQFKDLGLV 796

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  L +  T   VL M+ATPIPRTL ++  G  + S +   P  R P+
Sbjct: 797  VVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATAPEERHPV 856

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   ++  L    + +++  ++          V +R   L     + I
Sbjct: 857  LTSVGPYSD-QQVTAAIRRELMREGQVFYVHNRVTTID-----KVAKRIAELVPE--ARI 908

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+MS+   E +M  F      +L++TT+IE G+D+ +A+ +I+E+A  +GL+QLHQ
Sbjct: 909  AVAHGKMSEARLEQIMVDFWERKLDVLVSTTIIETGLDIANANTLIVEDAHRYGLSQLHQ 968

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  PL + +  RL  +    +   G  +A +DL+ R  G +
Sbjct: 969  LRGRVGRGRERAYAYFLYDPQKPLGEVALERLKAVATHNELGAGMQLAMKDLEIRGAGNL 1028

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +QSG         +L+  ++  A  D K      P    V       L + Y   E 
Sbjct: 1029 LGGEQSGHI--AGVGFDLYLRMVGEAVADFKGEEDTSPAEVKVELPVNAHLPHDYVPGER 1086

Query: 694  FQF 696
             + 
Sbjct: 1087 LRL 1089


>gi|83953596|ref|ZP_00962317.1| transcription-repair coupling factor [Sulfitobacter sp. NAS-14.1]
 gi|83841541|gb|EAP80710.1| transcription-repair coupling factor [Sulfitobacter sp. NAS-14.1]
          Length = 1162

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 138/451 (30%), Positives = 230/451 (50%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        ++    +        P++ T
Sbjct: 547 DKLGGGAWQSKKAKLKERIREMADKLIRIAAERALRKAPVMDPPPGMWDAFAARFPYTET 606

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q +AI D+L D++  N M R++ GDVG GKT VA+ A   A  +G Q  I+AP  +LA
Sbjct: 607 DDQLNAISDVLDDLTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVAPTTLLA 666

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY+   +  +   + V  ++  +         + I  G   +++GTHAL   ++++  
Sbjct: 667 RQHYKSFAERFRGFPLEVRQLSRFVSAKEATATRDGINRGTVDVVVGTHALLAKTVKFKN 726

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L    T  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 727 LGLLIIDEEQHFGVGHKERLKAMRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVD 786

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P+I +  E            L E  
Sbjct: 787 RLAIRTYVSEFDAV-TLREALLREHYRGGQSFYVVPRITDLPEIE--------AFLKEQL 837

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +I+  A+ FGL
Sbjct: 838 PELTYLVAHGQMAAGELDDRMNAFYDGKYDILLATTIVESGLDIPTANTMIVHRADMFGL 897

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           AQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R
Sbjct: 898 AQLYQIRGRVGRSKTRAYAYLTTKPRAKLTATAEKRLRVLGSLDTLGAGFTLASQDLDIR 957

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG  +      EL+ S+LE A
Sbjct: 958 GAGNLLGEEQSGQMRD--VGFELYQSMLEDA 986


>gi|255010538|ref|ZP_05282664.1| putative transcription-repair coupling factor [Bacteroides fragilis
           3_1_12]
          Length = 1125

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 223/450 (49%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 508 WEKLKERTKTKIKDIARDLIKLY--SQRREEKGFAYSPDSFLQRELEASFIYEDTPDQSK 565

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+ QDM +   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 566 ATADVKQDMERDMPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 625

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +   +     VE ++     A  +  ++ +  G  +I+IGTH +    +++  L L+I
Sbjct: 626 TFRDRLKGLPCRVEYLSRARTAAQAKAVIKGLETGDVNILIGTHRILGKDVKFKDLGLLI 685

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+  P  R PI+
Sbjct: 686 IDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQ 745

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +  + + + +   +S   + + +  +I    E            L       IA
Sbjct: 746 TEVHTFSE-EVIADAINFEMSRNGQVFLVNNRIANLPELKAMI-------LRRIPDCRIA 797

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M  ++ E ++  F N    +LIATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 798 IGHGQMEPVELEQIIFGFVNYDYDVLIATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 857

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 858 RGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 917

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 918 GAEQSGFIADL--GYETYQKILSEAVHELK 945


>gi|218960874|ref|YP_001740649.1| putative transcription-repair coupling factor [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729531|emb|CAO80443.1| putative transcription-repair coupling factor [Candidatus
           Cloacamonas acidaminovorans]
          Length = 1127

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 142/475 (29%), Positives = 235/475 (49%), Gaps = 19/475 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  R+     EL+A  I  L   +  +  +GI    + +  +++  +  +  T  Q  
Sbjct: 532 WNNTKRKAAQQIELIAADIVKLYAERSSR--LGIAHQPDTEWQKELEDSFIYEDTPDQSK 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A K+I +DM     M R+L GDVG GKT VA+ A   AV +G Q  ++AP  +L +QHY 
Sbjct: 590 ATKEIKEDMELPAPMERLLCGDVGFGKTEVAIRAAFKAVCSGYQVAVLAPTTLLVEQHYR 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++      + + + +        +K L  +  G   I IGTH L    +Q+ KL L+I
Sbjct: 650 VFRERLAQYPVKIVMFSRFRKNTAMKKDLLGLKSGSIDIAIGTHRLLSKDVQFKKLGLLI 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV+ + KL    +    L M+ATPIPRTL +      +IS +   P  R P++
Sbjct: 710 IDEEHRFGVRHKEKLRALQSNVDTLYMSATPIPRTLNMALSKLKEISLMQTSPKERLPVR 769

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T+I P + ++ + + ++  +  G + ++I  +++  +             L         
Sbjct: 770 TIITPRD-MEVIKDAIRREIDRGGQVFFIHNRVQTIET--------VATELRNAMPKVRF 820

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + H +M +   E VM  F     ++LI+TT+IE GID+ +A+ I+I+NAE FGLAQL+Q
Sbjct: 821 IVGHAQMPEQQLERVMADFWAKEYQVLISTTIIENGIDIPNANTILIDNAETFGLAQLYQ 880

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
           +RGRVGR    +   LL     +  +  RL  L   +    GF +A  DL+ R  G ILG
Sbjct: 881 MRGRVGRSNRRAYAYLLISKGTTTVARKRLEALTQYDYLGAGFQVALRDLELRGAGTILG 940

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAK--HILTQDPDLTSVRGQSIRILLYLY 688
            KQSG+ + +      ++ +L  A +  +    +    D +    + +R  + LY
Sbjct: 941 TKQSGIIQAIGFNY--YNRILANAIQAVEKGETIKLFNDESPDTRRKVRTEIDLY 993


>gi|83942375|ref|ZP_00954836.1| transcription-repair coupling factor [Sulfitobacter sp. EE-36]
 gi|83846468|gb|EAP84344.1| transcription-repair coupling factor [Sulfitobacter sp. EE-36]
          Length = 1162

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 138/451 (30%), Positives = 230/451 (50%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        ++    +        P++ T
Sbjct: 547 DKLGGGAWQSKKAKLKERIREMADKLIRIAAERALRKAPVMDPPPGMWDAFSARFPYTET 606

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q +AI D+L D++  N M R++ GDVG GKT VA+ A   A  +G Q  I+AP  +LA
Sbjct: 607 DDQLNAISDVLDDLTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVAPTTLLA 666

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY+   +  +   + V  ++  +         + I  G   +++GTHAL   ++++  
Sbjct: 667 RQHYKSFAERFRGFPLEVRQLSRFVSAKEATATRDGINRGTVDVVVGTHALLAKTVKFKN 726

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L    T  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 727 LGLLIIDEEQHFGVGHKERLKAMRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVD 786

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P+I +  E            L E  
Sbjct: 787 RLAIRTYVSEFDAV-TLREALLREHYRGGQSFYVVPRITDLPEIE--------AFLKEQL 837

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +I+  A+ FGL
Sbjct: 838 PELTYLVAHGQMAAGELDDRMNAFYDGKYDILLATTIVESGLDIPTANTMIVHRADMFGL 897

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           AQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R
Sbjct: 898 AQLYQIRGRVGRSKTRAYAYLTTKPRAKLTATAEKRLRVLGSLDTLGAGFTLASQDLDIR 957

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG  +      EL+ S+LE A
Sbjct: 958 GAGNLLGEEQSGQMRD--VGFELYQSMLEDA 986


>gi|330443885|ref|YP_004376871.1| transcription-repair coupling factor [Chlamydophila pecorum E58]
 gi|328806995|gb|AEB41168.1| transcription-repair coupling factor [Chlamydophila pecorum E58]
          Length = 1070

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 140/444 (31%), Positives = 217/444 (48%), Gaps = 14/444 (3%)

Query: 212 PRKAKDFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
           P +  +   +   R R L    L+A    LL +  Q            G+   K     P
Sbjct: 481 PPEFHNLNGSKWKRSRELTEKSLVAYAEKLLQLEAQRSTTPAFVHPPHGEEVIKFAETFP 540

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAP 329
           +  T  Q  AI+ I +DM  +  M R++ GD G GKT V + A   AV  G  Q ++M P
Sbjct: 541 YEETPDQLKAIEQIYEDMMSEKLMDRLICGDAGFGKTEVIMRAAVKAVCDGHRQVIVMVP 600

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA QHYE  K+      I + +I+       ++   +++A G   I+IGTH L    
Sbjct: 601 TTILAHQHYETFKQRMAGLPINIAVISRFSQTKEQKVIFQKVAEGGIDILIGTHKLINKH 660

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++++   L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL ++  G  D+S IT
Sbjct: 661 LEFHHPGLLIIDEEQRFGVKIKESLKERYPNIDCLTVSATPIPRTLYMSLTGARDLSIIT 720

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
             P  R P+ T ++  N  + +   L+  L  G +AY I  +IE         + E   +
Sbjct: 721 MPPLDRLPVSTFLMEHND-ETLSAALRHELLRGGQAYVIHNRIESLF-----RLAENIRT 774

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           L     + I + HG+M+  +   +   FK     +LIAT +IE GID+ +A+ I+I++A+
Sbjct: 775 LIPE--ARIGVAHGQMTSEELAKIFHKFKTQQTNILIATAIIENGIDIPNANTILIDHAD 832

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL--KNTEDGFLIAEEDL 625
            FG+A L+Q++GRVGR  + + C  L      LS  +  RL+ L  +    G  IA  DL
Sbjct: 833 KFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPAAKRLAALNKQEYGGGMKIALHDL 892

Query: 626 KQRKEGEILGIKQSGMPKFLIAQP 649
           + R  G ILG  QSG    +    
Sbjct: 893 EIRGAGNILGTDQSGHISAIGFNL 916


>gi|313148344|ref|ZP_07810537.1| transcription-repair coupling factor [Bacteroides fragilis 3_1_12]
 gi|313137111|gb|EFR54471.1| transcription-repair coupling factor [Bacteroides fragilis 3_1_12]
          Length = 1128

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 223/450 (49%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 511 WEKLKERTKTKIKDIARDLIKLY--SQRREEKGFAYSPDSFLQRELEASFIYEDTPDQSK 568

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+ QDM +   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 569 ATADVKQDMERDMPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 628

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +   +     VE ++     A  +  ++ +  G  +I+IGTH +    +++  L L+I
Sbjct: 629 TFRDRLKGLPCRVEYLSRARTAAQAKAVIKGLETGDVNILIGTHRILGKDVKFKDLGLLI 688

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+  P  R PI+
Sbjct: 689 IDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQ 748

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +  + + + +   +S   + + +  +I    E            L       IA
Sbjct: 749 TEVHTFSE-EVIADAINFEMSRNGQVFLVNNRIANLPELKAMI-------LRRIPDCRIA 800

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M  ++ E ++  F N    +LIATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 801 IGHGQMEPVELEQIIFGFVNYDYDVLIATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 860

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 861 RGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 920

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 921 GAEQSGFIADL--GYETYQKILSEAVHELK 948


>gi|148260750|ref|YP_001234877.1| transcription-repair coupling factor [Acidiphilium cryptum JF-5]
 gi|326403946|ref|YP_004284028.1| transcription-repair-coupling factor [Acidiphilium multivorum
           AIU301]
 gi|146402431|gb|ABQ30958.1| transcription-repair coupling factor [Acidiphilium cryptum JF-5]
 gi|325050808|dbj|BAJ81146.1| transcription-repair-coupling factor [Acidiphilium multivorum
           AIU301]
          Length = 1144

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 219/450 (48%), Gaps = 15/450 (3%)

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
           +  AR+  A + +      L+ +  + K      +  +     +     P++ T+ Q  A
Sbjct: 541 SWQARKAKARNRIRDMAAGLIRIAAERKLHDAAILAADDGAFAEFCARFPYTETEDQARA 600

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I D+++D++    M R++ GDVG GKT VAL A   A  +G Q  ++ P  +LA+QHY  
Sbjct: 601 IADVMEDLAAGKPMDRLVCGDVGFGKTEVALRAAFIAAMSGAQVAVVVPTTLLARQHYRL 660

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
             +      I VE ++  +      K    +A G  +I++GTHAL   +I +  L L+IV
Sbjct: 661 FSERFAGLPIRVEQLSRLVSAKDTAKVKAGLADGTVNIVVGTHALLSKTIAFADLALLIV 720

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+  FGV  + +L Q     HVL +TATPIPRTL L   G  D+S IT  P  R  ++T
Sbjct: 721 DEEQHFGVAHKERLKQLKADIHVLTLTATPIPRTLQLALTGVRDLSLITTPPVDRLAVRT 780

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            I+P +++  + E +      G + + + P IE+        + ER   +        A 
Sbjct: 781 FIMPWDKL-VIREAIARERFRGGQIFCVVPHIEDID-----RMRERLAEIAPDL--RTAT 832

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HGR+   + E VM  F  G   +L+AT ++E G+D+   + I+I  A+ FGL QL+QLR
Sbjct: 833 AHGRLPPTEIERVMTEFSEGKHDVLLATNIVESGLDMPAVNTILIWRADLFGLGQLYQLR 892

Query: 581 GRVGRGEEISSCILLYHPPLSKNSY-----TRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           GRVGRG++     L +    +  +        +  L     GF +A  DL  R  G +LG
Sbjct: 893 GRVGRGKQRGYAYLTWPASHTLAASSQKRLEVMQTLDTLGAGFTLASHDLDLRGAGNLLG 952

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            +QSG         EL+  +LE A  + + 
Sbjct: 953 DEQSGHI--REVGIELYQQMLEDAVAELRA 980


>gi|328950754|ref|YP_004368089.1| transcription-repair coupling factor [Marinithermus hydrothermalis
           DSM 14884]
 gi|328451078|gb|AEB11979.1| transcription-repair coupling factor [Marinithermus hydrothermalis
           DSM 14884]
          Length = 985

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 150/479 (31%), Positives = 244/479 (50%), Gaps = 20/479 (4%)

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            L  +    +        +P +       EW     +     E LA ++ +L  +++   
Sbjct: 371 YLPIEQLSLLRRHPGTTDDPPRLSRLGKNEWARAKAKAQKDAEALAQRLLVLHAKREA-- 428

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
             G            I +N P++ T  Q+ A+++ L+D+     M R++ GDVG GKT V
Sbjct: 429 TPGYAFTPLPDWDPLIEKNFPYTLTPDQKRALEETLKDLETPRPMDRLISGDVGFGKTEV 488

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           AL A    V  G Q   + P  +LAQQHYE      ++  + + +++        R+ LE
Sbjct: 489 ALRAAHRVVGHGKQVAFLVPTTLLAQQHYETFCARFRDLPVSIGMLSRFTSAREERRVLE 548

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +  G   I+IGTH L    + +  L L+I+DE+HRFGV Q+ +L +      VL ++AT
Sbjct: 549 GLKRGAVDIVIGTHRLLSADVAFRDLGLLIIDEEHRFGVAQKERLKELREGVDVLTLSAT 608

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL    +G  D+S I   P GRKPI+T++ P +    V E +   +  G KA+++ 
Sbjct: 609 PIPRTLYQALVGLKDVSSIQTPPPGRKPIRTILAPFD-PALVREAVMFEIERGGKAFYVH 667

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            ++         S+ +R   L      + I ++HG+M + + E VM  F+ G   LL+AT
Sbjct: 668 DRV--------ASIAQRAKYLEALIPEARIGVVHGQMPEDEIEEVMFLFQEGAFDLLVAT 719

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           T++E G+D+ +A+ I+IE A+  GLA L+QLRGRVGR E+ +   L + P L++ +  RL
Sbjct: 720 TIVESGLDIPEANTILIERADKLGLANLYQLRGRVGRREKEAYAYLFHPPKLTEAAERRL 779

Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           + + +  D   G L+AE+D++ R  G +LG +Q G         E++  LL  A +  K
Sbjct: 780 AAIADLSDLGSGHLLAEKDMEIRGVGNLLGPEQHGHI--RAVSFEVYTELLAEAVRKLK 836


>gi|303245477|ref|ZP_07331761.1| transcription-repair coupling factor [Desulfovibrio fructosovorans
            JJ]
 gi|302493326|gb|EFL53188.1| transcription-repair coupling factor [Desulfovibrio fructosovorans
            JJ]
          Length = 1150

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 148/525 (28%), Positives = 247/525 (47%), Gaps = 33/525 (6%)

Query: 188  WIEKD---LLQKKSFPSIAEAFNIIHNPRKAK--DFEWTSPARERLAYDELLAGQIALLL 242
            ++  D   L+Q+   P  A        P   +     W S         E +A  +  + 
Sbjct: 524  YLPADRLGLMQRYKGPEGAT-------PPLDRLGGARWKSVRERAKKAIERIAADLVEMY 576

Query: 243  MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
              +Q     G       ++  +      F  T  QE AI ++L DM +   M R++ GDV
Sbjct: 577  AYRQVA--KGYAYGPTNELYLEFEATFGFEETPDQEKAIDEVLADMERPEPMDRLVCGDV 634

Query: 303  GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
            G GKT VAL A   AV  G Q  ++ P  +LA+QHY+      +   + VE+++  +   
Sbjct: 635  GFGKTEVALRAAFRAVLDGKQVAMLCPTTVLAEQHYQNFMARLEGFPVRVEMLSRFVSPK 694

Query: 363  HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
             R+  LE ++ G+  I+IGTH +    +    + L+I+DE+ RFGV+ + +L        
Sbjct: 695  RRKVVLEAVSRGEVDILIGTHRILSSDVTIPNIGLLILDEEQRFGVKHKERLKAFKKNID 754

Query: 423  VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
             L +TATPIPRTL L+  G   +S I   PA RK ++T ++  +    + E L+  L   
Sbjct: 755  ALTLTATPIPRTLQLSLSGVRGLSVIETPPAERKTVETALVERD-PAFLREVLRRELERQ 813

Query: 483  KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             + +W+  +++  +E     V     +L     + +A+ HG+MS+   E  M  F +G  
Sbjct: 814  GQVFWVHNRVQGLEE-----VAAFVRTLAP--QAKVAMAHGQMSETGLEEAMHGFWHGET 866

Query: 543  KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH----- 597
             +L+ T++IE G+D   A+ ++++NA  FGL QL+QLRGRVGR    +    +       
Sbjct: 867  DILVCTSIIESGLDFPRANTLVVDNAHMFGLGQLYQLRGRVGRSPRQAYAYFVVPSIERV 926

Query: 598  PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            P L++     +  +     GF +A EDL+ R  G ILG  QSG    +     L + L E
Sbjct: 927  PELARKRLRVILDMDYLGAGFQVAMEDLRLRGAGNILGEAQSGHIARIGLDMFL-EMLAE 985

Query: 658  IARKDAKHILTQ--DPDLTSVRGQSIRI-LLYLYQYNEAFQFIRA 699
               +     + +  +P+LT   G + RI   Y+ + ++  +  +A
Sbjct: 986  EVGRLKGEPVKERTEPELT--LGVAARIPERYVPEASDRLRLYKA 1028


>gi|260912528|ref|ZP_05919061.1| transcription-repair coupling factor [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260633351|gb|EEX51508.1| transcription-repair coupling factor [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 1134

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 154/577 (26%), Positives = 260/577 (45%), Gaps = 37/577 (6%)

Query: 100 EITLLFFYRKT---EMLKNVFFEGRKITVTGKIKKLKNRIIMVHP-HYIFHNSQDVNFPL 155
           ++ + FF          K      R     GK+      +  + P  +I H   D     
Sbjct: 403 DLRICFFTDHQIFDRFHKYNLKSDRARA--GKLALTMKELQEMEPGDFIVHV--DFGIGK 458

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR-- 213
              +  +PTG S     +I+ +   ++ V        +       S          PR  
Sbjct: 459 FGGLVRVPTGNSYQEMIRIVYQNNDKVDV-------SIHSLYK-ISRYRKGTATEQPRLS 510

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                 W     +     + +A  +  L  +++ ++      + +  +  ++  +  +  
Sbjct: 511 TLGTGAWERLKEKTKKRIKDIARDLIKLYAKRRTERG--FAFSHDSFMQHELEASFLYDD 568

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  A  ++  DM +   M R++ GDVG GKT VA+ A   A     Q  +M P  +L
Sbjct: 569 TPDQLKATTEVKADMERARPMDRLVCGDVGFGKTEVAIRAAFKAACDSKQVAVMVPTTVL 628

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A QH++   K  +N  + V+ ++        R+ L+ +A G+  IIIGTH L   +++++
Sbjct: 629 AFQHFKTFSKRLENLPVRVDYLSRARSAKQTRQVLDDLAAGKIDIIIGTHKLIGKTVKWH 688

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ +FGV  + KL    T    L M+ATPIPRTL  + +G  D+S +   P 
Sbjct: 689 DLGLLIIDEEQKFGVSTKEKLRTLKTNVDTLTMSATPIPRTLQFSLMGARDMSVMRTPPP 748

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R PI T I   +    + E +   +S   + Y++  +I         ++ E  N + +H
Sbjct: 749 NRHPIHTEIATFDG-AFIAEAINFEMSRNGQVYFVNDRIS--------NLPELANIIRKH 799

Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                + I HG+M   D E+ +  F N    +L++T++IE GID+ +A+ III +A   G
Sbjct: 800 VPDCRVVIAHGQMKPEDLENALIDFMNHEYDVLLSTSIIENGIDISNANTIIINHAHKVG 859

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQ 627
           L+ LHQ+RGRVGR    + C LL  P   L+ ++  R+  L+   D   GF IA +DL  
Sbjct: 860 LSDLHQMRGRVGRSNRKAFCYLLAPPLSALTPDARRRMEALETFSDLGSGFNIAMQDLDI 919

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           R  G +LG +QSG  + L    E +  +L  A  + +
Sbjct: 920 RGAGNLLGAEQSGFMEDL--GYETYQKILSQAVTELR 954


>gi|224540214|ref|ZP_03680753.1| hypothetical protein BACCELL_05127 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518176|gb|EEF87281.1| hypothetical protein BACCELL_05127 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1131

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 142/429 (33%), Positives = 223/429 (51%), Gaps = 15/429 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           + +  Q ++E G   +V+  + +++  +  +  T  Q  A  D+  DM     M R++ G
Sbjct: 533 IRLYSQRREEKGFQFSVDSFLQRELEASFIYEDTPDQSKATADVKADMESNRPMDRLVCG 592

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT VA+ A   AV    Q  ++ P  +LA QH++  K   ++    VE ++    
Sbjct: 593 DVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKDRLKDLPCKVEYLSRART 652

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            A  +  ++ +A G  +I+IGTH +    IQ+  L L+I+DE+ +FGV  + KL Q    
Sbjct: 653 AAQAKAVIKGLAAGDVNILIGTHRILGKDIQFKDLGLLIIDEEQKFGVSVKEKLRQLKVN 712

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              L MTATPIPRTL  + +G  D+S I   P  R PI+T +   N  + + + +   +S
Sbjct: 713 VDTLTMTATPIPRTLQFSLIGARDLSVIQTPPPNRYPIQTEVHTFNE-EVIADAINFEMS 771

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
              + + +  +I    E   ++++ER           IAI HG+M   + E ++  F N 
Sbjct: 772 RNGQVFLVNNRISNLPE--LKAMIERH-----IPDCRIAIGHGQMEPTELEKIIFGFVNY 824

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-- 598
              +LIATT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  P  
Sbjct: 825 DYDVLIATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLS 884

Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
            L+  +  RL  ++N  D   G  IA +DL  R  G +LG +QSG    L    E +  +
Sbjct: 885 SLTPEARRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGFIADL--GYETYQKI 942

Query: 656 LEIARKDAK 664
           L  A  + K
Sbjct: 943 LTEAVHELK 951


>gi|91200730|emb|CAJ73782.1| similar to transcription-repair coupling factor [Candidatus
           Kuenenia stuttgartiensis]
          Length = 1092

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 140/514 (27%), Positives = 247/514 (48%), Gaps = 30/514 (5%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           +L+QK    S  +A        K     W    +        +A  +  +   +  K+ I
Sbjct: 478 ELVQKYIGASGHKAKL-----DKIHSKSWEMRKKRAEHAVADIASDLLHIQASRNAKEGI 532

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
             P   + K  +       +  T  Q   ++ I  DM  K  M R++ GDVG GKT +A+
Sbjct: 533 TYP--PDTKWQRDFESAFIYEETPDQLQVLETIKSDMQSKRPMDRLICGDVGYGKTELAI 590

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A   A   G QA ++ P  ILAQQHY    +   +  + +E+++       ++  LE+ 
Sbjct: 591 RAAFKAAMYGKQAAVLVPTTILAQQHYTTFSERMADYPVEIEVLSRLKSHKEQKDILEKT 650

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             G+  I+IGTH L Q  + +  L LVI+DE+ RFGV  + +  +      +L +TATPI
Sbjct: 651 LAGKIDILIGTHRLLQKDVVFKDLGLVIIDEEQRFGVAHKERFKKMRQVVDMLTLTATPI 710

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL ++ +G  DIS +   P GR+ I+T I+  +    + + + + ++   + Y++  +
Sbjct: 711 PRTLHMSLMGIKDISSLNTPPLGRQSIRTQIMRFD-PQRIRQAILLEMNRNGQVYFVHNR 769

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR-MSDIDKESVMDSFKNGTCKLLIATTV 550
           +      N   +    +++     + I ++HG+ M +      M  F +    +L++TT+
Sbjct: 770 V-----YNIERIAHTLSTIVPE--ARILVVHGQMMDEKLLAQRMKDFVDHKADILVSTTI 822

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRL 608
           IE G+D+ + + I I  A+ FGLA LHQLRGRVGR +  +   ++     P++  +  R+
Sbjct: 823 IESGLDIPNVNTIFINCADSFGLADLHQLRGRVGRYKHHAYAYIVLPIDRPVTPEAEKRV 882

Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             ++   +   GF IA  DL+ R  G ILG++Q G         E++  LLEIA   A++
Sbjct: 883 KAIEEFAELGAGFKIAMRDLEIRGAGNILGVEQHGHI--AAVGYEMYCRLLEIAVCKARN 940

Query: 666 I-LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
             +++ PD++      +++ L  +  +E      
Sbjct: 941 EPVSEPPDVS------LKLNLESFLPDEYIPEYS 968


>gi|257068518|ref|YP_003154773.1| transcription-repair coupling factor Mfd [Brachybacterium faecium DSM
            4810]
 gi|256559336|gb|ACU85183.1| transcription-repair coupling factor Mfd [Brachybacterium faecium DSM
            4810]
          Length = 1211

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 130/438 (29%), Positives = 216/438 (49%), Gaps = 15/438 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +       +A ++  L   +Q     G     +    +++  +  F  T  Q 
Sbjct: 592  DWAKTKSKARKAIREIADELVRLYSARQSA--PGHAFGPDTPWQRELEDSFEFVETPDQL 649

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I D+  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++AP  +LAQQH 
Sbjct: 650  VTIDDVKADMEKSVPMDRLILGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLLAQQHL 709

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++     A     +E +  G   I+IGTH L   ++++  L L+
Sbjct: 710  DTFAERYTGFPVTVRGLSRFQNPADSEATVEGLRDGSVDIVIGTHRLLTGNVRFKDLGLL 769

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 770  IVDEEQRFGVEHKETLKALRTNVDVLSMSATPIPRTLEMAVTGIRELSILATPPEERHPV 829

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L    + ++I  ++E+        V      L     + +
Sbjct: 830  LTYVGAQED-KQVTAAIRRELLREGQVFYIHNRVEDID-----RVAAHLRELVPD--ARV 881

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M++   E V+  F      +L+ TT++E G+D+ +A+ +I+ENA+ FGL+QLHQ
Sbjct: 882  QVAHGKMNEHQLERVLIDFWERDFDVLVCTTIVETGLDISNANTLIVENADRFGLSQLHQ 941

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR  E +    LY+   PL++ ++ RL+ L    D   G  +A +DL+ R  G +
Sbjct: 942  LRGRVGRSSERAYAYFLYNATKPLTELAHDRLTTLATNTDLGAGMQVAMKDLEIRGAGNL 1001

Query: 634  LGIKQSGMPKFLIAQPEL 651
            LG +QSG    +     +
Sbjct: 1002 LGGEQSGHIAGVGFDLYV 1019


>gi|110679958|ref|YP_682965.1| transcription-repair coupling factor [Roseobacter denitrificans OCh
           114]
 gi|109456074|gb|ABG32279.1| transcription-repair coupling factor [Roseobacter denitrificans OCh
           114]
          Length = 1154

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 142/451 (31%), Positives = 231/451 (51%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        +     +        P++ T
Sbjct: 539 DRLGGGAWQAKKARLKERIREMADKLIRVAAERALRKAPVLEPPPGMWDAFSARFPYTET 598

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI D++ D++  N M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA
Sbjct: 599 DDQLRAIADVIDDLTSGNPMDRLVCGDVGFGKTEVAMRAAFVAAMSGVQVALIAPTTLLA 658

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY+   +  +   I V  ++  +P     +  E ++ G   I+IGTHAL    I++  
Sbjct: 659 RQHYKSFAERFRGFPINVRQLSRFVPTKEANETREGLSRGTVDIVIGTHALLAQGIRFQN 718

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L Q  T  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 719 LGLLIIDEEQHFGVTHKERLKQLRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVD 778

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P+I +  E            L E  
Sbjct: 779 RLAIRTYVSEFDTV-TLREALLREHYRGGQSFYVVPRISDLPEIE--------AFLTEQL 829

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +I+  A+ FGL
Sbjct: 830 PELTYVVAHGQMAAGELDDRMNAFYDGKFDILLATTIVESGLDIPTANTMIVHRADMFGL 889

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           AQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R
Sbjct: 890 AQLYQIRGRVGRSKTRAYAYLTTKPRARLTATAEKRLRVLSSLDTLGAGFTLASQDLDIR 949

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG  +      EL+ S+LE A
Sbjct: 950 GAGNLLGEEQSGQMRD--VGFELYQSMLEEA 978


>gi|253564911|ref|ZP_04842367.1| transcription-repair coupling factor [Bacteroides sp. 3_2_5]
 gi|251946376|gb|EES86753.1| transcription-repair coupling factor [Bacteroides sp. 3_2_5]
          Length = 1125

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 138/450 (30%), Positives = 221/450 (49%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 508 WEKLKERTKTKIKDIARDLIKLY--SQRREEKGFAYSPDSFLQRELEASFIYEDTPDQSK 565

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+ QDM +   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 566 ATADVKQDMERDMPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 625

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +   +     VE ++     A  +  ++ +  G  +I+IGTH +    +++  L L+I
Sbjct: 626 TFRDRLKGLPCRVEYLSRARTAAQAKAVIKGLEAGDVNILIGTHRILGKDVKFKDLGLLI 685

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I+  P  R PI+
Sbjct: 686 IDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQ 745

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +  + + + +   +S   + + +  +I    E            L       IA
Sbjct: 746 TEVHTFSE-EVIADAINFEMSRNGQVFLVNNRIANLPELKAMI-------LRHIPDCRIA 797

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +LI TT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 798 IGHGQMEPAELEQIIFGFVNYDYDVLIVTTIIESGIDIPNANTIIINQAQNFGLSDLHQM 857

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 858 RGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 917

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 918 GAEQSGFIADL--GYETYQKILSEAVHELK 945


>gi|306826192|ref|ZP_07459527.1| transcription-repair coupling factor [Streptococcus sp. oral taxon
            071 str. 73H25AP]
 gi|304431668|gb|EFM34649.1| transcription-repair coupling factor [Streptococcus sp. oral taxon
            071 str. 73H25AP]
          Length = 1167

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 152/500 (30%), Positives = 247/500 (49%), Gaps = 31/500 (6%)

Query: 214  KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556  KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQHAFDDAFPYVE 613

Query: 274  TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
            T  Q  +I++I +DM   + M R+L GDVG GKT VA+ A   AV    Q V++ P  +L
Sbjct: 614  TDDQLRSIEEIKRDMQDSHPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVL 673

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
            AQQHY   K+  QN  + +++++    +  + + LE++ +GQ  I+IGTH +    + + 
Sbjct: 674  AQQHYTNFKERFQNFAVNIDVLSRFRSKKEQSETLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394  KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734  DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454  GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             R P++T ++  N    + + +   +  G + Y++  +++           ++ + L E 
Sbjct: 794  NRYPVQTYVLEKN-PSVIRDAILREMERGGQVYYLYNKVDTID--------QKVSELQEL 844

Query: 514  FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
               ++I  +HG+MS+I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845  IPEAAIGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQ 627
            L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K       GF IA  DL  
Sbjct: 905  LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSI 964

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA------------RKDAKHILTQDPDLTS 675
            R  G +LG  QSG         EL+  LLE A            + +A+ IL  D  L  
Sbjct: 965  RGAGNLLGKSQSGFID--SVGFELYSQLLEEAIAKRNGNSNTRTQGNAELILQIDAYLPD 1022

Query: 676  VRGQSIRILLYLYQYNEAFQ 695
                  R  + +Y+      
Sbjct: 1023 TYISDQRHKIEIYKKIRRID 1042


>gi|85858740|ref|YP_460942.1| transcription-repair coupling factor [Syntrophus aciditrophicus SB]
 gi|85721831|gb|ABC76774.1| transcription-repair coupling factor [Syntrophus aciditrophicus SB]
          Length = 1202

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 140/445 (31%), Positives = 222/445 (49%), Gaps = 18/445 (4%)

Query: 225  RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
            R + +  E+    +A+   R   +            + ++     P+  T  Q  AI+DI
Sbjct: 619  RVKKSIQEVAEELVAIYAAR---EVMERRSFAPPDAVYEEFSAAFPYDETPDQARAIEDI 675

Query: 285  LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
              DM+    M R++ GD G GKT VA+ +       G Q  ++ P  ILA+QH +     
Sbjct: 676  HADMNSAKPMDRLICGDAGFGKTEVAMRSAFRTAMDGRQTAVLVPTTILAEQHCQTFSSR 735

Query: 345  TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
             ++  I +E +     +A +   LE +  GQ  I+IGTH L Q  + +  L LVIVDE+ 
Sbjct: 736  MKDYPIRIEALNRFKSKAEQSSVLEGLRKGQVDIVIGTHRLLQKDVTFKNLGLVIVDEEQ 795

Query: 405  RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            RFGV  + KL +  T   VL +TATPIPRTL L+ +G  D+S I   P  R+ IKT ++ 
Sbjct: 796  RFGVAHKEKLKKLRTLVDVLTLTATPIPRTLHLSLVGIRDLSIINTPPEDRQTIKTYVLE 855

Query: 465  INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
             N  + + E ++  L+   + +++  ++         ++      L     + I ++HG+
Sbjct: 856  FNE-ETIREAIRRELARNGQVFFLHDRVRSIY-----TMARLVEKLVPE--ADIGVVHGQ 907

Query: 525  MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
            M   + E VM  F    C +L+ TT+I  G+D+  A+ I++  A+ FGLAQL+Q+RGRVG
Sbjct: 908  MKPREIEDVMGRFLRKECNVLVCTTIIGSGLDIPTANTILVNRADRFGLAQLYQIRGRVG 967

Query: 585  RGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQS 639
            R  E +   LL      LS+++  RL V+ +      GF IA  D++ R  G +LG  QS
Sbjct: 968  RSSEEAYAYLLVPKGVLLSRDAQKRLQVIMDFSEPGSGFRIASSDMEIRGGGNLLGTSQS 1027

Query: 640  GMPKFLIAQPELHDSLLEIARKDAK 664
            G         EL+  L+E   ++ K
Sbjct: 1028 GHVS--AVGYELYTELMEQTIREIK 1050


>gi|281412781|ref|YP_003346860.1| DEAD/DEAH box helicase domain protein [Thermotoga naphthophila
           RKU-10]
 gi|281373884|gb|ADA67446.1| DEAD/DEAH box helicase domain protein [Thermotoga naphthophila
           RKU-10]
          Length = 893

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 144/488 (29%), Positives = 258/488 (52%), Gaps = 22/488 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++     E    ++  L M++Q  + + +P   + ++ +K   + P+  T  Q+ 
Sbjct: 321 WKQTLKKVREDIEKKIRELVELYMKRQEAQGLSLP--GDPELEEKFAESFPYIETPDQQQ 378

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           +I+++L D++ +  M R+L GD G GKT VAL A   AV +G Q  ++ P  +LA+QHYE
Sbjct: 379 SIEEVLYDLASEKPMDRLLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVLARQHYE 438

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  +   + VE++  +     +++ +E++  G+  IIIGTH+L  + I++  L LVI
Sbjct: 439 NFKERMETFGVKVELLDSSRTAREKKEIIEKLKKGEIDIIIGTHSLLNERIEFSDLGLVI 498

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV+Q+ +  +   + +VL ++ATPIPRTL +   G  D S I   P GRKP+ 
Sbjct: 499 IDEEQKFGVEQKERFKKLRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVY 558

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
             +   +  D V   +   ++ G +  ++  ++EE          E F  L   F    I
Sbjct: 559 VYVAEYSD-DLVKGAVIREINRGGQVIYVHNRVEEL--------PEVFEKLKRMFPELEI 609

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+ HG+MS    E ++  F  G   +L+ TT+IE G+D+ +A+ +I+++A  +GL+QL+Q
Sbjct: 610 AVAHGKMSRRTMERIVHEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLSQLYQ 669

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
           LRGRVGR +  +    LY     +++  RL VLK+      G  IA +D++ R  G++LG
Sbjct: 670 LRGRVGRSDRRAFAYFLYPKGTPRSALERLKVLKSYTGFGSGLQIALKDMELRGVGDVLG 729

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKH--ILTQDP---DLTSVRGQSIRILLYLYQY 690
           ++Q G    +    +L++ +L+      +   I  +     ++ +  G+      Y+   
Sbjct: 730 LEQHG--NVVSVGLKLYNEILKETITRFREGRIEKKHSVNVEIENPPGRFFIPEDYVQNP 787

Query: 691 NEAFQFIR 698
            E  +F R
Sbjct: 788 VERLRFYR 795


>gi|114764341|ref|ZP_01443569.1| transcription-repair coupling factor [Pelagibaca bermudensis
            HTCC2601]
 gi|114543289|gb|EAU46306.1| transcription-repair coupling factor [Roseovarius sp. HTCC2601]
          Length = 1158

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 143/467 (30%), Positives = 237/467 (50%), Gaps = 24/467 (5%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + + A  +    ++A  L+R   +        I+      +      P++ T
Sbjct: 546  DRLGGGAWQAKKARLKERIREMADKLIRVAAERALRKAPIIDPPPGAWESFCARFPYTET 605

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q  AI+D+L+DM+  N M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA
Sbjct: 606  DDQIGAIEDVLEDMTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVIAPTTLLA 665

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QHY+   +  +   I V  ++  +      K  + I  G   I +GTHAL   +I++  
Sbjct: 666  RQHYKSFAERFRGFPINVAPLSRFVSSGQAAKTRDGITKGTVDIAVGTHALLAKNIRFQN 725

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 726  LGLLIIDEEQHFGVGHKERLKQLRSDIHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVD 785

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  I+T +   + +  + E L      G +++++ P+I +  E            L E  
Sbjct: 786  RLSIRTYVSEFDAV-TIREALLREHYRGGQSFYVVPRISDLAEIE--------EFLREQV 836

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               S  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++  ++ FGL
Sbjct: 837  PEVSYVVAHGQMAAGELDERMNAFYDGKFDVLLATTIVESGLDIPTANTMVVHRSDMFGL 896

Query: 574  AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            +QL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R
Sbjct: 897  SQLYQIRGRVGRSKTRAYAYLTTQPRAKLTDTAQKRLRVLGSLDTLGAGFTLASQDLDIR 956

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARK-----DAKHILTQD 670
              G +LG +QSG  +      EL+ S+LE A       + + +L  D
Sbjct: 957  GAGNLLGEEQSGQMRD--VGYELYQSMLEEAIAKIKSGEMEGLLDDD 1001


>gi|297183227|gb|ADI19367.1| transcription-repair coupling factor (superfamily II helicase)
            [uncultured Chloroflexi bacterium HF0500_03M05]
          Length = 1192

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 142/455 (31%), Positives = 229/455 (50%), Gaps = 21/455 (4%)

Query: 220  WTSPARERLAYDELLAGQIAL--LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
             T   +           ++A   L +    +   G+    +     ++  + P+  T+ Q
Sbjct: 566  GTQMWKRTKERVAQSTHEMASELLSLYATREFAEGVAFPSDTPWQIELEDSFPYEETRDQ 625

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            ++AI +I  DM Q   M R++ GDVG GKT +AL A   AV AG Q  ++ P  +LAQQH
Sbjct: 626  QTAIAEIKTDMEQSRPMDRLVCGDVGYGKTEIALRAAFKAVMAGKQVAVLVPTTVLAQQH 685

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            Y    +      + +E ++    +  +R+ +E + +G+  I IGTH L Q  +++  L L
Sbjct: 686  YVTFSQRLSAYPVKIEALSRFRTEQEQRQIVEDLTNGKVDICIGTHRLVQKDVKFKDLGL 745

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VIVDE+ RFGV  + +L Q      VL MTATPIPRTL L+  G  D+S I   P  R P
Sbjct: 746  VIVDEEQRFGVVHKERLKQIRHEVEVLTMTATPIPRTLHLSLAGIRDMSTIDTPPEERLP 805

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--EKKESNFRSVVERFNSLHEHFT 515
            IKT +   +  + V E ++  +    + +++  ++   +   +  R++V           
Sbjct: 806  IKTYVSEFSD-ELVREAIRREIDRQGQVFFLHNRVRNIDYMANYIRAMVPEAE------- 857

Query: 516  SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
              + I HG+M +   E  M  F +G   +L+ TT+IE G+D+ + + +II  ++ FGLAQ
Sbjct: 858  --VGIAHGQMPEDQLERSMIDFADGKTDVLVCTTIIESGLDIPNVNTLIINRSDTFGLAQ 915

Query: 576  LHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVL---KNTEDGFLIAEEDLKQRKE 630
            L+QLRGR+GRG   +   L+  P   L++ +  RL  +        GF IA +DL+ R  
Sbjct: 916  LYQLRGRIGRGVRRAYAYLMIPPSSSLTELAEKRLKTMLAATELGAGFRIAMKDLEIRGA 975

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            G ILG +QSG    +     L+  LL  A ++ + 
Sbjct: 976  GNILGAQQSGYIYAIGFD--LYTKLLGEAVEELRA 1008


>gi|289642495|ref|ZP_06474639.1| transcription-repair coupling factor [Frankia symbiont of Datisca
            glomerata]
 gi|289507669|gb|EFD28624.1| transcription-repair coupling factor [Frankia symbiont of Datisca
            glomerata]
          Length = 1238

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 142/483 (29%), Positives = 240/483 (49%), Gaps = 17/483 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +AG++  L          G     +    +++    PF  T  Q 
Sbjct: 630  DWAKRKGRARKAVKEIAGELIRLY--SARMAAPGHAFGPDTPWQRELEDAFPFRETPDQL 687

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 688  SAIEEVKADMRKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 747

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++     + ++  L+ ++ G   ++IGTH L   + ++  L LV
Sbjct: 748  QMFSERYAAFPVNVRAMSRFNSASEQKAVLDGLSDGTVDVVIGTHRLLSSTSRFKDLGLV 807

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +  TA  VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 808  IVDEEQRFGVEHKEYLKKMRTAVDVLTMSATPIPRTLEMSITGIRELSTIDTPPEERHPI 867

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   ++  L    + ++I  ++E            R   L     + +
Sbjct: 868  LTFVGPSDNR-QVAAAIRRELLREGQVFFIHNRVESIDA-----AAARLRDLVPE--ARV 919

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M +   E VM +F      +L+ TT++E G+D+ +A+ +++E A+ FGL+QLHQ
Sbjct: 920  ATAHGQMGEDALEQVMVAFWEKKFDVLVCTTIVESGLDISNANTLVVERADVFGLSQLHQ 979

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  PL++ ++ RL+ +    D   G  +A +DL+ R  G +
Sbjct: 980  LRGRVGRGRERAYAYFLYPPDKPLTETAHDRLATIAQHSDLGAGMAVAMKDLEIRGAGNL 1039

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +QSG         +L+  ++  A  + K  + ++P    V       L + Y  +E 
Sbjct: 1040 LGGEQSGHI--ASVGFDLYVRMVGEAVANFKGTVVEEPPEVKVELPVNASLPHDYVPSER 1097

Query: 694  FQF 696
             + 
Sbjct: 1098 LRL 1100


>gi|288928499|ref|ZP_06422346.1| transcription-repair coupling factor [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288331333|gb|EFC69917.1| transcription-repair coupling factor [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 1134

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 153/576 (26%), Positives = 263/576 (45%), Gaps = 35/576 (6%)

Query: 100 EITLLFF--YRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP-HYIFHNSQDVNFPLI 156
           ++ + FF  ++  +       +  +    GK+      +  + P  +I H   D      
Sbjct: 403 DLRICFFTDHQIFDRFHKYNLKSERARA-GKLALTMKELQEMEPGDFIVHV--DFGIGKF 459

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR--K 214
             +  +PTG S     +I+ +   ++ V        +       S          PR   
Sbjct: 460 GGLVRVPTGNSYQEMIRIVYQNNDKVDV-------SIHSLYK-ISRYRKGTATEQPRLST 511

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
                W     +     + +A  +  L  +++ ++      + +  +  ++  +  +  T
Sbjct: 512 LGTGAWERLKEKTKKRIKDIARDLIKLYAKRRTERG--FAFSHDSFMQHELEASFLYEDT 569

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  A  ++  DM +   M R++ GDVG GKT VA+ A   A     Q  +M P  +LA
Sbjct: 570 PDQLKATTEVKADMERARPMDRLVCGDVGFGKTEVAIRAAFKAACDSKQVAVMVPTTVLA 629

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            QH++   K  +N  + V+ ++        R+ L+ +A G+  IIIGTH L   +++++ 
Sbjct: 630 FQHFKTFSKRLENLPVRVDYLSRARSAKQTRQVLDDLAAGKIDIIIGTHKLIGKTVKWHD 689

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+ +FGV  + KL    T    L M+ATPIPRTL  + +G  D+S +   P  
Sbjct: 690 LGLLIIDEEQKFGVSTKEKLRTLKTNVDTLTMSATPIPRTLQFSLMGARDMSVMRTPPPN 749

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R PI T I   +    V E +   +S   + Y++  +I         ++ E  N + +H 
Sbjct: 750 RHPIHTEIATFDG-AFVAEAINFEMSRNGQVYFVNDRI--------ANLPELANIIRKHV 800

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               + I HG+M   D E+ +  F N    +L++T++IE GID+ +A+ II+ +A   GL
Sbjct: 801 PDCRVVIAHGQMKPEDLENALIDFMNHEYDVLLSTSIIENGIDISNANTIIVNHAHKVGL 860

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           + LHQ+RGRVGR    + C LL  P   L+ ++  RL  L+   D   GF IA +DL  R
Sbjct: 861 SDLHQMRGRVGRSNRKAFCYLLAPPLSALTPDARRRLEALETFSDLGSGFNIAMQDLDIR 920

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             G +LG +QSG  + L    E +  +L  A  + +
Sbjct: 921 GAGNLLGAEQSGFMEDL--GYETYQKILSQAVTELR 954


>gi|260427548|ref|ZP_05781527.1| transcription-repair coupling factor [Citreicella sp. SE45]
 gi|260422040|gb|EEX15291.1| transcription-repair coupling factor [Citreicella sp. SE45]
          Length = 1160

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 143/467 (30%), Positives = 237/467 (50%), Gaps = 24/467 (5%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + + A  +    ++A  L+R   +        I+      +      P+S T
Sbjct: 548  DRLGGGAWQAKKARLKERIREMADKLIRVAAERALRKAPIIDPPPGAWESFCARFPYSET 607

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q SAI+D+L DM+  N M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA
Sbjct: 608  DDQLSAIEDVLGDMTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVIAPTTLLA 667

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QHY+   +  +   + V  ++  +  +   +  + I  G   I +GTHAL    I++  
Sbjct: 668  RQHYKSFAERFRGFPLNVAPLSRFVSASEAARTRDGITKGTVDIAVGTHALLAKGIRFQN 727

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 728  LGLLIIDEEQHFGVNHKERLKQLRSDIHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVD 787

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  I+T +   + +  + E L      G +++++ P+I +  E            L E  
Sbjct: 788  RLSIRTYVSEFDPV-TIREALLREHYRGGQSFYVVPRISDLPEIE--------EFLREQV 838

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               S  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++  A+ FGL
Sbjct: 839  PEVSYVVAHGQMAAGELDEKMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFGL 898

Query: 574  AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            +QL+Q+RGRVGR +  +   +   P   L+  +  RL VL + +    GF +A +DL  R
Sbjct: 899  SQLYQIRGRVGRSKTRAYAYMTTKPRAKLTDTAEKRLRVLGSLDTLGAGFTLASQDLDIR 958

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARK-----DAKHILTQD 670
              G +LG +QSG  +      EL+  +LE A       + + +L QD
Sbjct: 959  GAGNLLGEEQSGQMRD--VGYELYQQMLEEAIAKIKSGEMEGLLEQD 1003


>gi|254293942|ref|YP_003059965.1| transcription-repair coupling factor [Hirschia baltica ATCC 49814]
 gi|254042473|gb|ACT59268.1| transcription-repair coupling factor [Hirschia baltica ATCC 49814]
          Length = 1152

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 145/451 (32%), Positives = 233/451 (51%), Gaps = 19/451 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W S   +       +AG +  +   ++ +K      + +G +  +     P+  T  Q +
Sbjct: 555 WQSRKAKAKKNIMEMAGDLIRIAAEREMRKAEKTA-DADG-LFDEFCARFPYEETDDQLN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+D L D++    M R++ GDVG GKT VAL     A  +G Q  I+AP  +LA+QHY 
Sbjct: 613 AIEDCLSDLASGKPMDRLVCGDVGFGKTEVALRTAFVAAMSGMQVAIIAPTTLLARQHYR 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  +   I V  ++  +    +    E +A G A +++GTHA+    +++ +L L++
Sbjct: 673 TFKERFEGWPIKVRQLSRFVSAKEQTTTREMLASGDADVVVGTHAVISKQVKFKRLGLLV 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ RFGV+ + ++ +     HVL ++ATPIPRTL L   G  D+S I   P  R  ++
Sbjct: 733 VDEEQRFGVKHKERMKEMKADIHVLTLSATPIPRTLQLALTGIRDLSIIATPPIDRLSVR 792

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T  +  + +  V E L      G ++Y+I P++ +         +ERF  L E     S 
Sbjct: 793 TYTVEFDPV-TVREALLRERYRGGQSYFIAPRVSDL------PFLERF--LREQVPEVSF 843

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              HG+M+    E +M+ F +G   +L+ATT++E G+D+  A+ I+I  A+ FGLAQL+Q
Sbjct: 844 LSAHGQMASGQLEDIMNDFYDGKADVLLATTIVESGLDIPRANTIVIHRADKFGLAQLYQ 903

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGR +  +   +       LS+ +  RL VL++ +    GF++A  DL  R  G +
Sbjct: 904 LRGRVGRSKLRAYAYMTTKKDMVLSETAEKRLKVLQSLDSLGAGFMLASHDLDMRGGGNL 963

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG  QSG         EL+  +LE A    K
Sbjct: 964 LGDAQSGH--VREVGVELYQQMLEDAVNALK 992


>gi|114800270|ref|YP_760685.1| transcription-repair coupling factor [Hyphomonas neptunium ATCC
           15444]
 gi|114740444|gb|ABI78569.1| transcription-repair coupling factor [Hyphomonas neptunium ATCC
           15444]
          Length = 1145

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 136/451 (30%), Positives = 235/451 (52%), Gaps = 19/451 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +   +       +A ++  +   ++ K+     +     + ++     P+  T  Q S
Sbjct: 511 WQTRKAKAKKRILEMAAELMQIAAARELKRAE--AVQSGQGLYEEFAARFPYEETDDQLS 568

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+D+L D+S    M R++ GDVG GKT VAL A   A  +G Q  ++AP  +LA+QH++
Sbjct: 569 AIEDVLGDLSSGKPMDRLVCGDVGFGKTEVALRAAFVAAMSGKQVAVIAPTTLLARQHFK 628

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++      + V  ++  +      +  + +A G   +++GTHA+    + + +L L+I
Sbjct: 629 TFEERFAGWPLKVRALSRFVGAREAAETRDGLASGSVDVVVGTHAVLSKDMNFKRLGLMI 688

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ RFGV+ + +L +  +  HVL ++ATPIPRTL +   G  D+S I   P  R  ++
Sbjct: 689 VDEEQRFGVKHKERLKELKSDVHVLTLSATPIPRTLQMALTGIRDLSIIATPPVDRLSVR 748

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T I   + +  + E L      G +A+++ P+I +  +          N L  H    S 
Sbjct: 749 TYITEEDTV-TLREALLREKYRGGQAFFVAPRITDLDKLE--------NFLRTHVPEVSF 799

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+M+  + E +M +F  G   +L++TT++E G+D+  A+ +II  A+ FGLAQL+Q
Sbjct: 800 IVAHGQMAAGELEDIMTAFYEGKYDVLLSTTIVESGLDIPRANTLIIHRADMFGLAQLYQ 859

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGR +  +           +++++  RL VL++ +    GF +A  DL  R  G +
Sbjct: 860 LRGRVGRSKLRAYAYFTTPKDKVVTESAEKRLKVLQSLDSLGAGFQLASHDLDMRGAGNL 919

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG +QSG  +      EL+ S+LE A K  +
Sbjct: 920 LGDQQSG--QVKEVGVELYQSMLEDAVKALQ 948


>gi|302530260|ref|ZP_07282602.1| transcription-repair coupling factor [Streptomyces sp. AA4]
 gi|302439155|gb|EFL10971.1| transcription-repair coupling factor [Streptomyces sp. AA4]
          Length = 1192

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 139/466 (29%), Positives = 234/466 (50%), Gaps = 17/466 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +         + +A ++  L   +Q     G     +     ++    PF+ T  Q 
Sbjct: 582  DWKNTKARAKKAVKEIAAELVQLYAARQAA--PGHAFGPDTPWQSELEDAFPFTETNDQL 639

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 640  AAIDEVKADMERGVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHL 699

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  ++  + ++ ++    +A   + LE++A G+  I+IGTH L Q  I+Y  L LV
Sbjct: 700  NTFTERMRSFPVTIKGLSRFTHKAESDRILEQLADGEVDIVIGTHRLLQTGIRYKDLGLV 759

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 760  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEDRHPI 819

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   ++  L    + +++  ++   +        +R   L     + +
Sbjct: 820  LTYVGAYDD-KQVGAAVRRELLRDGQVFYVHNRVSSIE-----KAAKRIRELVPE--ARV 871

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E ++  F      +L+ TT++E G+D+ +A+ +I+E  +  GLAQLHQ
Sbjct: 872  VTAHGQMNEDKLEKIIQGFWENEYDVLVCTTIVETGLDISNANTLIVERGDMLGLAQLHQ 931

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G I
Sbjct: 932  LRGRVGRGRERGYAYFLYPPEAPLTETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGNI 991

Query: 634  LGIKQSGMPKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVR 677
            LG +QSG    +     +      +E  R+ A     +D +L  VR
Sbjct: 992  LGAEQSGHIAGVGFDLYVRLVGEAVEAFRRHAGAEPAEDEELAEVR 1037


>gi|333029973|ref|ZP_08458034.1| transcription-repair coupling factor [Bacteroides coprosuis DSM
           18011]
 gi|332740570|gb|EGJ71052.1| transcription-repair coupling factor [Bacteroides coprosuis DSM
           18011]
          Length = 1123

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 130/433 (30%), Positives = 221/433 (51%), Gaps = 17/433 (3%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +  L  +++ +   G   + +  + +++  +  +  T  Q  + +D+ QDM     M R+
Sbjct: 527 LIKLYAKRREE--KGFAFSPDSFLQKELEASFIYEDTPDQSKSTQDVKQDMESNMPMDRL 584

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT +A+ A   AV    Q  ++ P  +LA QH++  K+  +     VE +T 
Sbjct: 585 VCGDVGFGKTEIAIRAAFKAVTDNKQVAVLVPTTVLAYQHFQTFKERLKEFPCTVEYLTR 644

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                H ++ L+ ++ G+  I+IGTH +   ++++  L L+I+DE+ +FGV  + KL Q 
Sbjct: 645 ARTTNHTKQVLKSLSEGKVDILIGTHKILGKNVKFKDLGLLIIDEEQKFGVSVKEKLRQM 704

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                 L +TATPIPRTL  + +G  D+S I+  P  R PI+T +   N  + + + +  
Sbjct: 705 KVNVDTLTLTATPIPRTLQFSLMGARDLSIISTPPPNRYPIQTEVHTFNE-EIITDAINF 763

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            +S   + +++  +I    +                    + I HG+M   + E  + +F
Sbjct: 764 EMSRNGQVFFVNNRIANLIDLKLMIQ-------KNIPDCRVCIGHGQMDPKEMEETILAF 816

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            N    +L++TT+IE GID+ +A+ III  A++FGL+ LHQ+RGRVGR  + + C LL  
Sbjct: 817 ANYDYDVLLSTTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAP 876

Query: 598 P--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           P   L+  +  RL  ++N  D   G  IA +DL  R  G +LG +QSG    L    E +
Sbjct: 877 PLSSLTDEARRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGFIADL--GYETY 934

Query: 653 DSLLEIARKDAKH 665
             +L  A  + K 
Sbjct: 935 QKILSEAVHELKQ 947


>gi|84516196|ref|ZP_01003556.1| transcription-repair coupling factor [Loktanella vestfoldensis
           SKA53]
 gi|84509892|gb|EAQ06349.1| transcription-repair coupling factor [Loktanella vestfoldensis
           SKA53]
          Length = 1148

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 150/466 (32%), Positives = 231/466 (49%), Gaps = 23/466 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    QIA  L+R   +        +  E  +  + L   P++ T
Sbjct: 538 DKLGGGAWQAKKARLKERIRQIAERLIRVAAERALRKAPVLEPESGLWDQFLARFPYAET 597

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q SAI D+L D+     M R++ GDVG GKT VA+ A   A  AG Q  I+AP  +LA
Sbjct: 598 DDQLSAIDDVLSDLGSGQPMDRLICGDVGFGKTEVAIRAAFVAAMAGVQVAIVAPTTLLA 657

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY+   +  +   + V  ++  +         + IA G   I+IGTHAL   ++ +  
Sbjct: 658 RQHYQSFAERFRGFPVNVRPLSRFVSPRDAALTRDGIAKGTVDIVIGTHALLAKAVNFKN 717

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+ +FGVQ + +L Q  T  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 718 LGLLIIDEEQKFGVQHKERLKQLRTDVHVLTLTATPIPRTLQLSLSGVRDLSVIGTPPID 777

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + I  V E L      G +++ + P+I +  E            L E  
Sbjct: 778 RLAIRTYVSEFDTI-TVREALLREHYRGGQSFIVVPRITDMDEME--------AFLREEV 828

Query: 515 TSSIAI-IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                I   G+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +I+  A+ FGL
Sbjct: 829 PEVTFISATGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIVWRADMFGL 888

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           +QL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R
Sbjct: 889 SQLYQIRGRVGRSKTRAYAYLTTKPRQKLTTTAQKRLRVLGSIDSLGAGFTLASQDLDIR 948

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA----RKDAKHILTQD 670
             G +LG +QSG         EL+  +LE      R  A   +  D
Sbjct: 949 GAGNLLGEEQSGQM--REVGYELYQQMLEDQINAIRSGAAEGIIDD 992


>gi|296328784|ref|ZP_06871298.1| transcription-repair coupling factor [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296154119|gb|EFG94923.1| transcription-repair coupling factor [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 981

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 144/460 (31%), Positives = 252/460 (54%), Gaps = 12/460 (2%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             ++    +++      ++ ++ +     G   + +  + ++     PF+ T +Q  AI+
Sbjct: 405 KRKKDKLSEDIEIFAKEIIKIQAKRNLGNGFKFSKDTVMQEEFEETFPFTETPAQLKAIE 464

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           D+ +DM     M R++ GDVG GKT VA+ A   AV  G Q +++ P  +LA+QHYE   
Sbjct: 465 DVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDGKQVILLVPTTVLAEQHYERFS 524

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D I++  + L+I+DE
Sbjct: 525 ERFKNYPVHIEILSRVQSKKEQVESLKRIENGSADLVIGTHRLLSDDIRFKDIGLLIIDE 584

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I   P GR+ I T  
Sbjct: 585 EQKFGVKAKEKLKKIKGNLDVLTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIHTEY 644

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
           I  N+ + + E +   +S   + ++I   ++  +     S V+    L   +   ++ IH
Sbjct: 645 IDNNK-NFIKEIILSEISREGQVFYIFNSVKRME-----SKVKEIRELLPEYI-KVSYIH 697

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +IIE  E  GL+Q++QLRGR
Sbjct: 698 GQMLPRDIKKNIQDFENGNVDVLVATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGR 757

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDLKQRKEGEILGIKQSG 640
           +GR  + S C +L +   +KN+  R   ++  ++  G  +A ED K R  GEILG KQ G
Sbjct: 758 IGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGIDLAMEDSKIRGVGEILGEKQHG 817

Query: 641 MPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
             +   + +    L++ +L++  +  + +   D +L   R
Sbjct: 818 AVETFGYNLYMKMLNEEILKLKGEAEEKLDEVDVELNFPR 857


>gi|260655930|ref|ZP_05861399.1| putative transcription-repair coupling factor [Jonquetella anthropi
           E3_33 E1]
 gi|260629546|gb|EEX47740.1| putative transcription-repair coupling factor [Jonquetella anthropi
           E3_33 E1]
          Length = 1023

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 139/436 (31%), Positives = 225/436 (51%), Gaps = 16/436 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+    +  A  E  A ++  L   +      G      G++     ++ P+  T+ Q  
Sbjct: 445 WSGAREKAEAQIEQEAQELLTLYATRA--ITPGRAFAPNGEMRSLFDQSFPYRETRDQLK 502

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI++I  DM +   M R+L GDVG GKT VAL A   AVE G QA  +AP  +LAQQHY 
Sbjct: 503 AIREIDSDMERPFPMDRLLVGDVGYGKTEVALRAAVKAVENGLQAAFVAPTTVLAQQHYR 562

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  +  I   +++  +  A ++K    +A G   +++GTH+LF+ ++++  L L+I
Sbjct: 563 TCLARIGDLPIRTALLSRMVTPAGQKKIRTGLAEGTIDLVVGTHSLFRTALEFKNLGLLI 622

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV  +  L        VL ++ATPIPR+L +   G  DIS +T  PA R  I 
Sbjct: 623 LDEEHRFGVAHKESLKATHPGVDVLSLSATPIPRSLSMAWRGIKDISLLTTPPASRGRIY 682

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           TV  P +    V + L   L  G + Y++  +IE+ ++  +R              + +A
Sbjct: 683 TVTGPWSE-SLVSDALARELQRGGQVYYLHNRIEDIQQVAWRVS-------QRFPDAPLA 734

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M+  + E VM+ F  G  ++LI TT++E G+DV  A+ +++++    GLAQ+HQ+
Sbjct: 735 VAHGQMNQRELEDVMERFYRGAVQILICTTIVESGLDVARANTLVVDDVRWLGLAQMHQI 794

Query: 580 RGRVGRGEEISSCILLYH------PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           RGR+GR +E      LY       P  +      L  ++++  G+ +A+ DL+ R  GEI
Sbjct: 795 RGRIGRRQEDGYAYFLYPGDDASLPGQTWERLEALGAMESSGGGYRLAQRDLEIRGAGEI 854

Query: 634 LGIKQSGMPKFLIAQP 649
           LG  Q G  + +    
Sbjct: 855 LGTSQHGFKQRIGYSL 870


>gi|114768783|ref|ZP_01446409.1| transcription-repair coupling factor [alpha proteobacterium
           HTCC2255]
 gi|114549700|gb|EAU52581.1| transcription-repair coupling factor [alpha proteobacterium
           HTCC2255]
          Length = 1151

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 144/445 (32%), Positives = 235/445 (52%), Gaps = 17/445 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +   +       +A ++  +   +  +K   + ++ +   A       P+  T  Q +
Sbjct: 550 WQAKKAKLKERIREMADKLLRIAAERSLRKSEILEVSPDKWNA--FCARFPYVETDDQLN 607

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+D++ DMS    M R++ GDVG GKT VAL A   A  AG QA I+AP  +LA+QH++
Sbjct: 608 AIEDVVSDMSSGKPMDRLICGDVGFGKTEVALRAAFIAASAGTQAAIIAPTTLLARQHFK 667

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++  + T I V+ ++  +  +  +K  E +  G   IIIGTHAL    I++  L L+I
Sbjct: 668 SFEERFRGTGIRVKQLSRFVTTSQMKKNREALRDGAVEIIIGTHALLAKDIKFANLGLLI 727

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + +L Q  +  HVL +TATPIPRTL L+  G  ++S I   P  R  I+
Sbjct: 728 IDEEQKFGVGHKERLKQLRSDIHVLTLTATPIPRTLQLSLSGVRELSVIGTPPIDRLAIR 787

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  + E L      G +++++ P+I +  E       +           +  
Sbjct: 788 TYVSEFDTV-TLREALLREHYRGGQSFFVVPRISDLPEIEAFIEEQV-------PEINHV 839

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M   + +  M++F +G   +L+ATT++E G+D+  A+ III  A+ FGL+QL+Q+
Sbjct: 840 VAHGQMPAGELDERMNAFYDGKFGILVATTIVESGLDIPTANTIIIHRADMFGLSQLYQI 899

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR +  +   L   P   L+  +  RL VL + +    GF++A +DL  R  G IL
Sbjct: 900 RGRVGRSKTRAYAYLTTKPRQKLTHAAIKRLRVLGSLDSLGAGFMLASQDLDIRGAGNIL 959

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIA 659
           G +QSG         EL+  +LE A
Sbjct: 960 GEEQSG--NVREVGYELYQEMLEDA 982


>gi|87199999|ref|YP_497256.1| transcription-repair coupling factor [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135680|gb|ABD26422.1| transcription-repair coupling factor [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 1164

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 151/457 (33%), Positives = 229/457 (50%), Gaps = 19/457 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + R A       ++A  LM          G+ + V+       +   P+  T
Sbjct: 554 DKLGGEAWQRRKARMRERILEMAGQLMATAAHRALRQGLVLPVDPASYGPFIDRFPWDET 613

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + QE AI D+L DM++   M R++ GDVG GKT VAL A   A   G Q  ++AP  +LA
Sbjct: 614 EDQERAIDDVLGDMAEGKPMDRLVCGDVGFGKTEVALRAAFVAAMQGVQVAVVAPTTLLA 673

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY    +      + +  ++  +P     +    +A G+  I+IGTHAL   S+++ +
Sbjct: 674 RQHYANFVERFNGFPLQIGRLSRLVPAKEASETRAGLADGRVDIVIGTHALLSKSVEFKR 733

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L LVIVDE+ RFGV  + KL +     HVL +TATPIPRTL +   G  ++S I   P  
Sbjct: 734 LGLVIVDEEQRFGVTHKEKLKELKADVHVLTLTATPIPRTLQMAMSGLRELSTIQTPPVD 793

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R   +T ++P + +  + E L      G +++ + P+I +        + E    L  + 
Sbjct: 794 RLATRTYVMPWDDM-VMREALLREHQRGGQSFIVVPRIAD--------MPELEEWLRLNV 844

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                   HG+MS  + E  M +F     ++L++TT++E GID+  A+ I+I  A+ FGL
Sbjct: 845 PEVRFVTAHGQMSPTEVEDRMGAFYEKKYEVLLSTTIVESGIDIPSANTIVIHRADRFGL 904

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           AQL+QLRGRVGRG+  +   L       LS+ +  RL VL + +    GF +A  DL  R
Sbjct: 905 AQLYQLRGRVGRGKIRAYAYLTVPEDMALSEVAEKRLKVLGDLDSLGAGFQLASHDLDIR 964

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             G +LG +QSG         EL+ S+LE A   AK 
Sbjct: 965 GAGNLLGDEQSGHI--KEVGFELYQSMLEDAILAAKA 999


>gi|90071180|emb|CAJ65832.1| putative transcription repair-coupling factor [uncultured
           Porphyromonadaceae bacterium]
          Length = 1053

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 136/442 (30%), Positives = 221/442 (50%), Gaps = 18/442 (4%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             R +    ++    I L   R++ K       + +G +  ++  +  +  T  Q  A +
Sbjct: 445 KERTKSKLKDIARDLIQLYAARRKEKG---FAYSPDGYLQHELEASFIYEDTPDQLKATE 501

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
            +  DM  +  M R++ GDVG GKT VA+ A   A   G Q  ++ P  +LA QH+    
Sbjct: 502 AVKADMESERPMDRLVCGDVGFGKTEVAIRAAFKAATDGKQTAVLVPTTVLAYQHFTTFS 561

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +  ++  + V+ ++        ++ LE +  G+  IIIGTH L   ++Q+  L L++VDE
Sbjct: 562 ERLKDFPVRVDYLSRARKPKDVKRILEELKEGKIDIIIGTHKLIGKTVQFKDLGLLVVDE 621

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + +FGV  + KL Q       L M+ATPIPRTL  + +G  D+S I   P  R PI T +
Sbjct: 622 EQKFGVGVKEKLKQLKVNVDTLTMSATPIPRTLQFSLMGARDLSAINTPPRNRYPIITNV 681

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
             ++  + + E +   L+ G + + +  +IE+  +        R   L     +   + H
Sbjct: 682 TALDD-EILREAINFELARGGQVFIVNNRIEQLFDLES-----RVRRLVPD--ARTVVGH 733

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M+    E  +  F      +L+ATT+IE GID+ + + III NA++FGL++LHQLRGR
Sbjct: 734 GQMASDKLEQTIIDFAAHQYDVLLATTIIESGIDMPNVNTIIINNAQNFGLSELHQLRGR 793

Query: 583 VGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIK 637
           VGR    + C LL  P   L+  +  RL  +++  D   G  IA +DL  R  G +LG +
Sbjct: 794 VGRSNRKAFCYLLVPPEAALTPVARRRLQAIESFSDLGSGIHIAMQDLDIRGAGNLLGAE 853

Query: 638 QSGMPKFLIAQPELHDSLLEIA 659
           QSG    L    E +  +L+ A
Sbjct: 854 QSGFIADL--GYETYQKILKEA 873


>gi|329948064|ref|ZP_08294965.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328523203|gb|EGF50304.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 1079

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 133/456 (29%), Positives = 221/456 (48%), Gaps = 17/456 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +       +AG++  L   +      G   + +     ++    P++ T  Q 
Sbjct: 452 DWAKTKSKARKAVREIAGELVRLYAARAA--TTGHAFSPDTPWQTELEEAFPYTETPDQL 509

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           S I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L  QH 
Sbjct: 510 STIDEVKADMEKAQPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVSQHA 569

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E   +      + V  ++     A   K LE +  G   +++GTH L    +++  L LV
Sbjct: 570 ETFTERYAGFPVTVGALSRFQDAAESAKILEGLEKGTVDVVVGTHRLITGQVRFKDLGLV 629

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S +   P  R PI
Sbjct: 630 IIDEEQRFGVEHKETLKALRTNVDVLSMSATPIPRTLEMAVTGLREMSTLATPPEDRHPI 689

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            T +       +V   ++  L    + +++  ++E+           R   L     + +
Sbjct: 690 LTYVGAY-ETKQVSAAIRRELLREGQVFFVHNRVEDIDA-----TAARLAELVPE--ARV 741

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HG+M++   E+V+DSF      +L+ TT++E G+DV +A+ +I++ A+  GL+QLHQ
Sbjct: 742 ATAHGQMNEHQLEAVIDSFWRKETDVLVCTTIVETGLDVSNANTLIVDRADRMGLSQLHQ 801

Query: 579 LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGRG E +    LY    PL++ +  RL  +    D   G  +A +DL+ R  G +
Sbjct: 802 LRGRVGRGRERAYAYFLYPSDKPLTETALERLRTIATNTDLGAGMQVAMKDLEIRGSGNL 861

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           LG +QSG         +L+  ++  A    K  L +
Sbjct: 862 LGGEQSGHI--AGVGFDLYVRMVSDAVSAYKKALAR 895


>gi|163746248|ref|ZP_02153606.1| transcription-repair coupling factor [Oceanibulbus indolifex
           HEL-45]
 gi|161380133|gb|EDQ04544.1| transcription-repair coupling factor [Oceanibulbus indolifex
           HEL-45]
          Length = 1156

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 137/451 (30%), Positives = 230/451 (50%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        ++    +        P++ T
Sbjct: 539 DKLGGGAWQSKKAKLKERIREMADKLIRIAAERALRKAPVLDPPPGMWDAFSARFPYTET 598

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI D++ D++  N M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA
Sbjct: 599 DDQLRAIGDVVDDLTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVIAPTTLLA 658

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY+   +  +   I V  ++  +         + +A G   I+IGTHAL    I++  
Sbjct: 659 RQHYKSFAERFRGFPIEVRQLSRFVSAKEATATRDGMAKGTVDIVIGTHALLAKGIRFKD 718

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+++DE+  FGV  + +L    T  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 719 LGLLVIDEEQHFGVSHKERLKSLRTDIHVLTLTATPIPRTLQLSLTGVRDLSVIGTPPVD 778

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P++ + +E          + L    
Sbjct: 779 RLSIRTYVSEFDAV-TIREALLREHYRGGQSFYVVPRLSDLREIE--------DFLQAQL 829

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++  A+ FGL
Sbjct: 830 PELSYVVAHGQMAPGELDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMVVHRADMFGL 889

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           AQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R
Sbjct: 890 AQLYQIRGRVGRSKTRAYAYLTTKPRAKLTDTAQKRLRVLGSLDTLGAGFTLASQDLDIR 949

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG  +      EL+ S+LE A
Sbjct: 950 GAGNLLGEEQSGQMRD--VGFELYQSMLEEA 978


>gi|325270511|ref|ZP_08137111.1| transcription-repair coupling factor [Prevotella multiformis DSM
            16608]
 gi|324987087|gb|EGC19070.1| transcription-repair coupling factor [Prevotella multiformis DSM
            16608]
          Length = 1182

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 151/585 (25%), Positives = 268/585 (45%), Gaps = 34/585 (5%)

Query: 99   GEITLLFFYRKT---EMLKNVFFEGRKITVTGKIKKLKNRIIMVHP-HYIFHNSQDVNFP 154
            G + + FF          K      R     GK+      +  + P  ++ H   D    
Sbjct: 448  GTLKVCFFTDHQIFDRFHKYSLKSDRARQ--GKMALTMKELQEMEPGDFLVHV--DFGIG 503

Query: 155  LIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214
                +  +P G S     +++ +    + V    + K  + K       E          
Sbjct: 504  RFAGLVRVPAGDSYQEMIRLVYQHNDIVDVSIHSLYK--ISKYRRGDTGE----PPRLSV 557

Query: 215  AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
                 W     +     + +A  +  L  R++ +   G   + +  +  ++  +  +  T
Sbjct: 558  LGSGAWDRLKEKAKKRIKDIARDLIRLYARRRRE--KGFAFSPDSFMQHELEASFLYEDT 615

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q  A +++ QDM     M R++ GDVG GKT VA+ A   A     Q  ++ P  +LA
Sbjct: 616  PDQLKATQELKQDMESARPMDRLVCGDVGFGKTEVAIRAAFKAAADNKQVAVLVPTTVLA 675

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
             QHY+  +K  ++  + V+ ++        R+ L  +A G+  I++GTH L   S++++ 
Sbjct: 676  FQHYQTFRKRLKDMPVRVDYLSRARSPKQTRQVLADLAEGKIDILVGTHKLIGKSVKWHD 735

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+ +FGV  + KL Q  T    L M+ATPIPRTL  + +G  D+S +   P  
Sbjct: 736  LGLLIIDEEQKFGVATKEKLRQLKTNVDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPN 795

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R PI+T I   +  + + + +   +S   + Y++  +I   +        E  + + ++ 
Sbjct: 796  RYPIQTEIASFSH-EVIADAVNFEMSRNGQIYFVNDRISNLQ--------EIADLIRKYV 846

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M   + E  +  F N    +L++TT++E GID+ +A+ III +A  FGL
Sbjct: 847  PDCRVAVGHGQMKPEELEETVMGFMNYDYDVLLSTTIVENGIDIPNANTIIINDAHRFGL 906

Query: 574  AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
            + LHQ+RGRVGR  + + C LL  P   L+  +  RL  L+   D   GF +A +DL  R
Sbjct: 907  SDLHQMRGRVGRSNKKAFCYLLAPPLAALNPEARRRLEALETFSDLGSGFNLAMQDLDIR 966

Query: 629  KEGEILGIKQSGMPKFL---IAQPELHDSLLEIARKDAKHILTQD 670
              G +LG +QSG  + L     Q  L  +++E+   + + +  ++
Sbjct: 967  GAGNLLGAEQSGFMEDLGYETYQKILSQAVMELKNDEFQDLYAEE 1011


>gi|197124848|ref|YP_002136799.1| transcription-repair coupling factor [Anaeromyxobacter sp. K]
 gi|196174697|gb|ACG75670.1| transcription-repair coupling factor [Anaeromyxobacter sp. K]
          Length = 1241

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 144/467 (30%), Positives = 234/467 (50%), Gaps = 25/467 (5%)

Query: 225  RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
            R+    ++LL     LL +        G       ++ ++     P+  T  Q  AI+D+
Sbjct: 591  RKARVKEQLLKMAAELLDIYAARAAHPGFAYPEPDQLFREFEAEFPWEETPDQAKAIEDV 650

Query: 285  LQDMSQKN-------RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            ++DM +          M R++ GDVG GKT VA+ A   AV A  Q  ++ P  +LA QH
Sbjct: 651  VRDMRKGRQGPAAAAPMDRLVCGDVGYGKTEVAMRAAMLAVLAKKQVAVLVPTTVLAAQH 710

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
                ++  +   + +E ++        ++AL+  A G+  I++GTH L    + +  L L
Sbjct: 711  ERTFRERFKGYPVRIEAVSRMRTADEVKQALKAAADGKVDIVVGTHRLLAADVSFKDLGL 770

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            V+VDE+ RFGV  + +L +      VL +TATPIPRTL ++  G  D+S I   P  R+ 
Sbjct: 771  VVVDEEQRFGVAHKERLKKLRKLVDVLTLTATPIPRTLHMSLAGVRDLSIIATPPEDRRA 830

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            I+T ++  +    V E ++  L  G + +++  ++               N L     + 
Sbjct: 831  IRTFVMKFD-PAAVKEAIETELKRGGQVFFVHNRVRSIHAMQRF-----LNELVPK--AR 882

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + + HG+M +   E VM  F +    +L+AT++IE G+D+  A+ II+  A+HFGLAQL+
Sbjct: 883  VGVAHGQMGEGKLEHVMTQFVDKELDVLLATSIIESGLDIPSANTIIVNRADHFGLAQLY 942

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            Q+RGRVGR  E +   LL     P++K++  RL VL+   +   GF IA  DL+ R  G 
Sbjct: 943  QIRGRVGRSRERAYAYLLVPARRPVTKDAQKRLEVLQRFSELGAGFKIASHDLELRGAGN 1002

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ---DPDLTSV 676
            +LG  QSG  +      EL+  LL+ A ++ K    +   DPD+   
Sbjct: 1003 LLGKDQSGQIE--AVGFELYQELLDEAVRELKGEAPREEIDPDVQLP 1047


>gi|239618514|ref|YP_002941836.1| transcription-repair coupling factor [Kosmotoga olearia TBF 19.5.1]
 gi|239507345|gb|ACR80832.1| transcription-repair coupling factor [Kosmotoga olearia TBF 19.5.1]
          Length = 1018

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 133/435 (30%), Positives = 228/435 (52%), Gaps = 14/435 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            L+    +   G+ +  +  +     R+ P   T+ Q  AI+++L D++ +  M R++ G
Sbjct: 445 ALLYGTREHLRGLSLKGDPTLEDAFKRSFPHLETEDQAKAIEEVLDDLADEKPMDRLVSG 504

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           D G GKT VAL A   AV +G Q  I+ P  +LA+QHYE  K   +   + V+I+     
Sbjct: 505 DAGYGKTEVALRAAFRAVVSGKQVSILVPTTVLARQHYETFKNRLEPFGVNVDILDRYRT 564

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              R+K L  + +G+  +IIGTH+L    +++  L LVI+DE+  FGV Q+  L +    
Sbjct: 565 PKERQKILRELKNGKIDVIIGTHSLLSKDVRFADLGLVIIDEEQLFGVMQKEHLKKLRLE 624

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            +VL M+ATPIPRTL +   G  ++S I   P GR   +T + P+N    +   +   ++
Sbjct: 625 VNVLTMSATPIPRTLYMALSGLRELSMIATPPIGRTMPETYVGPVNDR-LIRTAVLREIN 683

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G +  ++  ++ E  +   +       +L       I + HG+M     E  +  F +G
Sbjct: 684 RGGQVIYVHNRVNELNKLENK-----IRTLLPEVE--IGVAHGQMPKRLFEKNVGDFYSG 736

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
             ++L+ TT+IE G+D+ +A+ +I+++++ +GLAQL+QLRGRVGR    +    LY+P  
Sbjct: 737 KLQMLLCTTIIESGVDIPNANTLIVDDSQRYGLAQLYQLRGRVGRSTRRAFAYFLYNPKR 796

Query: 600 LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           L+  +  RL  L+       G  +A +D++ R  GE+LG +Q G    +     L+  ++
Sbjct: 797 LTPKAKERLKALREFSGPGSGMKLAIKDMEIRGFGELLGKEQHGNISSI--GLYLYKEMV 854

Query: 657 EIARKDAKHILTQDP 671
           E A  +A+ I   +P
Sbjct: 855 ERAVAEARGIKELEP 869


>gi|85717289|ref|ZP_01048243.1| transcription-repair coupling factor [Nitrobacter sp. Nb-311A]
 gi|85695878|gb|EAQ33782.1| transcription-repair coupling factor [Nitrobacter sp. Nb-311A]
          Length = 1174

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 141/457 (30%), Positives = 233/457 (50%), Gaps = 19/457 (4%)

Query: 224  ARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
             + R A  +    +IA  L+R   +        + V+  +  +     P+  T+ Q SAI
Sbjct: 574  WQARKAKLKSRIREIAGELIRIAAERHLRDAPKLPVQSGLYDEFCARFPYEETEDQLSAI 633

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +  L+D+     M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA+QH +  
Sbjct: 634  QASLEDLESGKPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTF 693

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
             +  +   + V   +  +      K  + +A G   I++GTHAL   SI++  L L++VD
Sbjct: 694  TERFRGFPVNVAQASRLVSTKELTKVKKGMADGSVDIVVGTHALLGKSIKFRDLGLLVVD 753

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+  FGV  + +L Q     HVL ++ATPIPRTL L   G  D+S I   P  R  ++T 
Sbjct: 754  EEQHFGVSHKERLKQLRAHVHVLTLSATPIPRTLQLALTGVRDLSIIASPPVDRLAVRTF 813

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520
            + P + +  + E L      G +A+++ P++ +  E          + L +H     +A+
Sbjct: 814  VAPHDPL-MIREALLRERYRGGQAFYVVPRVSDLAEVK--------DFLDKHVPEMKVAV 864

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+M     E ++ +F +G   +L++TT++E G+D+  A+ +I+  ++ FGLAQL+QLR
Sbjct: 865  AHGQMPPTVIEDIISAFYDGKYDVLLSTTIVESGLDIPTANTLIVHRSDMFGLAQLYQLR 924

Query: 581  GRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
            GRVGR +  +  +        ++  +  RL VL++ E    GF +A  DL  R  G +LG
Sbjct: 925  GRVGRSKLRAYALFTLPSTHKITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLG 984

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
             +QSG         EL+ S+LE A ++ K  +T+  D
Sbjct: 985  EEQSGHI--KEVGFELYQSMLEEAIENLKTGVTELAD 1019


>gi|259416898|ref|ZP_05740818.1| transcription-repair coupling factor [Silicibacter sp. TrichCH4B]
 gi|259348337|gb|EEW60114.1| transcription-repair coupling factor [Silicibacter sp. TrichCH4B]
          Length = 1151

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 139/451 (30%), Positives = 233/451 (51%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        ++      ++     P+  T
Sbjct: 538 DKLGGGAWQAKKARLKERIREMADRLIRIAAERALRKAPAMDPPPHAWEEFSARFPYQET 597

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI+D++ D++    M R++ GDVG GKT VA+ A   A  +G Q  I+AP  +LA
Sbjct: 598 DDQLRAIEDVMSDLNSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVAPTTLLA 657

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH    K+  +   + V  ++  +P     +  E +A G   I++GTHAL   +I++  
Sbjct: 658 RQHAAGFKERFRGFPLEVRQLSRFVPAKEAGQTREGLAKGTVDIVVGTHALLAKNIRFQN 717

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 718 LGLLIIDEEQHFGVAHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVD 777

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + I  + E L      G +++++ P+I +  E            L +  
Sbjct: 778 RLAIRTYVTEFDAI-TIREALLREHYRGGQSFYVVPRISDLPEIE--------AFLQDQL 828

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S  + +G+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++  A+ FGL
Sbjct: 829 PELSYVVANGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFGL 888

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           AQL+Q+RGRVGR +  +   L   P   L+ ++  RL VL + +    GF +A +DL  R
Sbjct: 889 AQLYQIRGRVGRSKTRAYAYLTTKPRQKLTDSAEKRLRVLGSLDTLGAGFTLASQDLDIR 948

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG  +      EL+ S+LE A
Sbjct: 949 GAGNLLGEEQSGQMRD--VGYELYQSMLEEA 977


>gi|86160747|ref|YP_467532.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans
            2CP-C]
 gi|85777258|gb|ABC84095.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans
            2CP-C]
          Length = 1241

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 143/467 (30%), Positives = 233/467 (49%), Gaps = 25/467 (5%)

Query: 225  RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
            R+    ++LL     LL +        G       ++ ++     P+  T  Q  AI+D+
Sbjct: 591  RKARVKEQLLKMAAELLDIYAARAAHPGFAYPEPDELFREFEAEFPWEETPDQAKAIEDV 650

Query: 285  LQDMSQKN-------RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            ++DM +          M R++ GDVG GKT VA+ A   AV A  Q  ++ P  +LA QH
Sbjct: 651  VRDMRKGRQGPAAAAPMDRLVCGDVGYGKTEVAMRAAMLAVLAKKQVAVLVPTTVLAAQH 710

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
                ++  +   + +E ++        ++AL+  A G+  I++GTH L    + +  L L
Sbjct: 711  ERTFRERFKGYPVRIEAVSRMRTADEVKRALKAAADGKVDILVGTHRLLAADVSFKDLGL 770

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            V+VDE+ RFGV  + +L +      VL +TATPIPRTL ++  G  D+S I   P  R+ 
Sbjct: 771  VVVDEEQRFGVAHKERLKKLRKLVDVLTLTATPIPRTLHMSLAGVRDLSIIATPPEDRRA 830

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            I+T ++  +    V E ++  L  G + +++  ++                 L     + 
Sbjct: 831  IRTFVMKFD-PAAVKEAIETELKRGGQVFFVHNRVRSIHAMQRF-----LGELVPK--AR 882

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + + HG+M +   E VM  F +    +L+AT++IE G+D+  A+ II+  A+HFGLAQL+
Sbjct: 883  VGVAHGQMGEGKLEHVMTQFVDKELDVLLATSIIESGLDIPSANTIIVNRADHFGLAQLY 942

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            Q+RGRVGR  E +   LL     P++K++  RL VL+   +   GF IA  DL+ R  G 
Sbjct: 943  QIRGRVGRSRERAYAYLLVPARRPVTKDAQKRLEVLQRFSELGAGFKIASHDLEIRGAGN 1002

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ---DPDLTSV 676
            +LG  QSG  +      EL+  LL+ A ++ K    +   DPD+   
Sbjct: 1003 LLGKDQSGQIE--AVGFELYQELLDEAVRELKGEAPREEIDPDVQLP 1047


>gi|220926926|ref|YP_002502228.1| transcription-repair coupling factor [Methylobacterium nodulans ORS
            2060]
 gi|219951533|gb|ACL61925.1| transcription-repair coupling factor [Methylobacterium nodulans ORS
            2060]
          Length = 1190

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 135/456 (29%), Positives = 223/456 (48%), Gaps = 17/456 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    ++A  L++   +        +        +     P+  T
Sbjct: 583  DKLGGGAWQARKAKLKRRILEMAGALIKVAAERFLRSAPRMEPPEGTYGEFAARFPYEET 642

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + QE+AI   L D++    M R++ GDVG GKT VAL A      +G Q  ++ P  +LA
Sbjct: 643  EDQEAAIAATLGDLTAGRPMDRLICGDVGFGKTEVALRAAFVTAISGKQVAVVVPTTLLA 702

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QHY    +  +   + +   +  +     +K  E +A+G   I++GTHAL   ++ +  
Sbjct: 703  RQHYRTFAERFKALPVNIAQASRFVSNTELKKVREGLANGTVDIVVGTHALLAKTVAFRD 762

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV  + +L    +  HVL ++ATPIPRTL L   G  ++S I   P  
Sbjct: 763  LGLIIIDEEQHFGVAHKERLKALRSEVHVLTLSATPIPRTLQLAMTGVRELSIIATPPVD 822

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +A+++ P+I+   E       E         
Sbjct: 823  RLAVRTFVTPFDPL-LIREALLRERYRGGQAFYVVPRIDHLDEVKRFLDREM-------P 874

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + + I HG+M+    E VM +F  G   +L++TT++E G+D+  A+ +I+  A+ FGLA
Sbjct: 875  EAKVGIAHGQMAAGQLEDVMTAFYEGRFDILLSTTIVESGLDIPTANTLIVHRADMFGLA 934

Query: 575  QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
            QL+QLRGRVGR +  +  +     +  L+  +  RL VL++ +    GF +A  DL  R 
Sbjct: 935  QLYQLRGRVGRSKARAYALFTTPENKTLTVQAERRLKVLQSLDTLGAGFQLASHDLDIRG 994

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             G +LG +QSG         EL+  +LE A    K 
Sbjct: 995  AGNLLGEEQSGHI--KEVGYELYQQMLEDAVAALKA 1028


>gi|329960904|ref|ZP_08299183.1| transcription-repair coupling factor [Bacteroides fluxus YIT 12057]
 gi|328532190|gb|EGF58994.1| transcription-repair coupling factor [Bacteroides fluxus YIT 12057]
          Length = 1164

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 138/469 (29%), Positives = 231/469 (49%), Gaps = 19/469 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W           + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 548  WEKLKDRTKTKIKDIARDLIKLY--SQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSK 605

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            +  D+  DM     M R++ GDVG GKT +A+ A   AV    Q  ++ P  +LA QH++
Sbjct: 606  STADVKADMESARPMDRLVCGDVGFGKTEIAVRAAFKAVADNKQVAVLVPTTVLAYQHFQ 665

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K+  +     V+ ++     A  +  ++ ++ G  +I+IGTH +    +++  L L+I
Sbjct: 666  TFKERLKGLPCRVDYLSRARTAAQAKAVVKGLSEGDVNILIGTHRILGKDVKFKDLGLLI 725

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 726  IDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 785

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   N  + + + +   +S   + +++  +I    E   ++++ER           + 
Sbjct: 786  TEVHTFNE-EVIADAVNFEMSRNGQVFFVNNRISNLAE--LKAMIER-----RIPDCRVC 837

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 838  IGHGQMEPAELEKIILDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 897

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 898  RGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 957

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAK--HILTQDPDLTSVRGQSI 681
            G +QSG    L    E +  +L  A ++ K        P+     G  I
Sbjct: 958  GAEQSGFIADL--GYETYQKILSEAVRELKTDEFADLYPEELKAEGGVI 1004


>gi|163731753|ref|ZP_02139200.1| transcription-repair coupling factor [Roseobacter litoralis Och
           149]
 gi|161395207|gb|EDQ19529.1| transcription-repair coupling factor [Roseobacter litoralis Och
           149]
          Length = 1154

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 140/451 (31%), Positives = 230/451 (50%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    +IA  L+R   +        +     +        P++ T
Sbjct: 539 DRLGGGAWQAKKARLKERIREIAEKLIRVAAERALRKAPVLEPPPGMWDAFSARFPYTET 598

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI+D++ DM+  N M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA
Sbjct: 599 DDQLRAIEDVIDDMTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVALIAPTTLLA 658

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY+   +  +   I V  ++  +         + ++ G   I+IGTHAL    I++  
Sbjct: 659 RQHYKSFAERFRGFPINVRQLSRFVSTKDANATRDGMSRGTVDIVIGTHALLAQGIRFQN 718

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+++DE+  FGV  + +L Q  T  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 719 LGLLVIDEEQHFGVTHKERLKQLRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVD 778

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P+I +  E            L E  
Sbjct: 779 RLAIRTYVSEFDTV-TLREALLREHYRGGQSFYVVPRISDLPEIE--------AFLTEQL 829

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++  A+ FGL
Sbjct: 830 PELTYVVAHGQMAAGELDDRMNAFYDGKFDILLATTIVESGLDIPTANTMVVHRADMFGL 889

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           AQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R
Sbjct: 890 AQLYQIRGRVGRSKTRAYAYLTTKPRARLTATAEKRLRVLSSLDTLGAGFTLASQDLDIR 949

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG  +      EL+ S+LE A
Sbjct: 950 GAGNLLGEEQSGQMRD--VGFELYQSMLEEA 978


>gi|220904183|ref|YP_002479495.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
            subsp. desulfuricans str. ATCC 27774]
 gi|219868482|gb|ACL48817.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
            subsp. desulfuricans str. ATCC 27774]
          Length = 1179

 Score =  329 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 131/444 (29%), Positives = 225/444 (50%), Gaps = 22/444 (4%)

Query: 223  PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
              + R A +++ A  + +   R   K   G   +  G++  +      F  T  Q  AI+
Sbjct: 581  KEKARKAIEKIAADLVEMYAYR---KVTKGFRYDPPGELYHEFEATFGFEETPDQAKAIQ 637

Query: 283  DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
            D+L DM +   M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QHY+  +
Sbjct: 638  DVLDDMDRPRPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQHYQTFR 697

Query: 343  KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
                   + V +++  +P+  +++ L+  A GQ  I+IGTH +    ++   L L+++DE
Sbjct: 698  ARLAGFPVNVGLLSRFVPRPRQKEVLKAAAAGQIDILIGTHRILSSDVKLPNLTLLVLDE 757

Query: 403  QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            + RFGV+ + KL        VL +TATPIPRTL L+  G  ++S I   P  RKP+ + +
Sbjct: 758  EQRFGVRHKEKLKALKKNVDVLTLTATPIPRTLQLSMSGIRELSIIETAPQDRKPVASAV 817

Query: 463  IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAI 520
            +  +  + + + L+  +    + +W+  +++          +ER           + + +
Sbjct: 818  LRKDD-NVLRKVLEREIEREGQVFWVYNRVQ---------GLERVAEYVRGLVPDARVGM 867

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+MS+ + E  M  F +G   +L+ T+++E G+D   A+ ++++ A+ FGL QL+QLR
Sbjct: 868  AHGQMSEAELEDTMHKFWHGELDVLVCTSIVESGLDFPRANTLVVDQAQMFGLGQLYQLR 927

Query: 581  GRVGRGEEISSCILLYHPP--LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEILG 635
            GRVGR +  +    +      L+  +  RL +   +     GF +A EDL+ R  G ILG
Sbjct: 928  GRVGRSDRQAYAFFVVPDAERLTAVAEERLRIILDMDYLGAGFQVAMEDLRLRGAGNILG 987

Query: 636  IKQSGMPKFLIAQPELHDSLLEIA 659
              QSG         +L+  +LE A
Sbjct: 988  EVQSGHM--CRVGLDLYLEMLEEA 1009


>gi|297569280|ref|YP_003690624.1| transcription-repair coupling factor [Desulfurivibrio alkaliphilus
            AHT2]
 gi|296925195|gb|ADH86005.1| transcription-repair coupling factor [Desulfurivibrio alkaliphilus
            AHT2]
          Length = 1179

 Score =  329 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 141/462 (30%), Positives = 226/462 (48%), Gaps = 18/462 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            D  W +           +A  +  L  ++Q     G   +  G++  ++  + P+  T  
Sbjct: 562  DKTWLATRNRIKKAVWQVAQDLLKLYAKRQLA--PGTSFSTPGELYSELEESFPYDETPG 619

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            Q  AI ++L D+     M R++ GDVG GKT VA+ A    VE GGQ  I+ P  +LA+Q
Sbjct: 620  QLKAIDEVLADLQADKPMDRLVCGDVGYGKTEVAVRAAFKVVEDGGQVAILVPTTVLAEQ 679

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            H    ++      + VE +      A ++K + ++A G   IIIGTH L    I++  L 
Sbjct: 680  HAATFRERLTGFPLRVESLNRFRTPAEQKKIVAQLAAGNIDIIIGTHRLLSADIKFRNLG 739

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+I+DE+HRFGV  + KL +  +   VL +TATPIPRTL L+ LG  D+S I+  P  R+
Sbjct: 740  LLIIDEEHRFGVSHKEKLKKMRSGVDVLTLTATPIPRTLQLSLLGVRDLSVISSPPNLRR 799

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             +KT +   + +  + E +   +    + + +  ++    E     V  +   L     +
Sbjct: 800  TVKTFVARHDDL-VIREAIHREMGRDGQVFIVHNRVSSIHE-----VAAKVQKLVPE--A 851

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             +A+ HG+M     E +M  F      +L+ TT+IE G+D+  A+ III  A+  GLA++
Sbjct: 852  RVAVAHGQMPGKQLEEIMVRFVRREINVLVCTTIIESGLDIPSANTIIITRADRLGLAEI 911

Query: 577  HQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            +QLRGRVGR    +   LL      L+  +  RL  L +  +   GF +A  DL+ R  G
Sbjct: 912  YQLRGRVGRSSRQAYAYLLVPALDDLAGEARRRLQALMDYNELGGGFKLALSDLQIRGGG 971

Query: 632  EILGIKQSGMPKFLIAQPELH---DSLLEIARKDAKHILTQD 670
             ILG  QSG    +     L     ++LE+ +K  +     +
Sbjct: 972  NILGESQSGNIAAVGYDLYLDLLQKTVLELKQKAGRSAAGAE 1013


>gi|194246457|ref|YP_002004096.1| ATP-dependent DNA helicase [Candidatus Phytoplasma mali]
 gi|193806814|emb|CAP18241.1| ATP-dependent DNA helicase [Candidatus Phytoplasma mali]
          Length = 626

 Score =  329 bits (844), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 189/640 (29%), Positives = 334/640 (52%), Gaps = 36/640 (5%)

Query: 31  INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY 90
           +     N  +FIDL+   P  + +     +I+ +  ++ V I G I+     +L K++ +
Sbjct: 18  LKLTQNNIKKFIDLIKQKPKKYENY-LLTEINNLEHQKDVMIYGKIASLP--KLFKKKVF 74

Query: 91  KILLN---DGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN 147
           +I      +    I ++ F      L ++    + I V GK    K  II      +   
Sbjct: 75  RIHFKIFLENNILIEVITFNN--LYLLDILKINQIIIVKGKYYNDKKTIIAS----LIST 128

Query: 148 SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-PEWIEKDLLQKKSFPSIAEAF 206
           + +++F  I+ +Y+    +S     KII   L++ P L  E +   +++K +F +  EAF
Sbjct: 129 NLEIDF-RIKPIYN-FKDISDKNVTKIIKYILNKYPQLIKENLPLKIIKKYNFMTRIEAF 186

Query: 207 NIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
             +H P   +  +      +RL Y+E       L  ++K    +   P+    K+ +KI+
Sbjct: 187 KNLHLPENNQKLKLAF---KRLKYEEAFIISKKLFQIKKNLPFKD--PLEYNIKLVKKII 241

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI 326
             IPF  T SQ+  I  I +D  +++++ R++QGDVGSGKT++A ++    + A  Q ++
Sbjct: 242 TTIPFELTLSQKKTINSIYKDFKKQHQVQRLIQGDVGSGKTIIAFLSAFGVITAYKQVLM 301

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP  ILAQQHY    K      +   I+T    +  +    ++I + +  +IIGTH   
Sbjct: 302 MAPTEILAQQHYLNFNKMF--PGVKSVILTSKNKK--KEILKKQIKNNEIQMIIGTH--I 355

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
             +I ++ L LVI+DEQH+FG++ + K   K    +++ +TATPIP+TL LT L +I++S
Sbjct: 356 LANIDFFSLGLVIIDEQHKFGLEIKQKAIFKDPTANIIYLTATPIPKTLALTYLENIEVS 415

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            + +     K + T  I   ++ E++++ +       + Y + P I++ K++   ++V+ 
Sbjct: 416 FVEKNEMLNKKVITQQIKKRQMLEILKKNQ---QNNSQTYIVVPAIKDNKKNF--NIVQI 470

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            + L      ++ I+HG+ +   +E+++ +F N  C +L+ATT+IEVGID+ + + III 
Sbjct: 471 TDYLETANIDNLYILHGKQNKEKQETLIKNFINNKCGILLATTIIEVGIDIPNVNTIIIL 530

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
            A +FGL+QLHQLRGRVGRG +   C L+           RL +L+   DGF+++  DLK
Sbjct: 531 GANYFGLSQLHQLRGRVGRGYKQGYCFLITEKE-----NERLKILQKEHDGFVLSNYDLK 585

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           +R  GE LG+KQSG  K    +      +L+  +KD + +
Sbjct: 586 KRGPGEFLGLKQSGYFKNRFLRLPQDFKILKQTKKDIEDL 625


>gi|111225581|ref|YP_716375.1| transcription-repair coupling factor [Frankia alni ACN14a]
 gi|111153113|emb|CAJ64860.1| Transcription-repair coupling factor (TRCF) [Frankia alni ACN14a]
          Length = 1246

 Score =  329 bits (844), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 140/483 (28%), Positives = 239/483 (49%), Gaps = 17/483 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +AG++  L          G     +    +++    PF  T  Q 
Sbjct: 641  DWAKRKSRARKAVKEIAGELIRLY--SARMAAPGHAFAPDNPWQRELEDAFPFRETPDQL 698

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 699  AAIDEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 758

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      +IV+ ++       ++   + +A G   ++IGTH L     ++  L LV
Sbjct: 759  QTFSERYAAFPVIVKAMSRFNSAGEQKAVADGLADGTVDVVIGTHRLLSGENRFKDLGLV 818

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +  TA  VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 819  IVDEEQRFGVEHKEQLKKMRTAVDVLTMSATPIPRTLEMSITGIRELSTIDTPPEERHPV 878

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   ++  L    + ++I  ++E            R   L     + I
Sbjct: 879  LTSVAPYDTR-QVAAAIRRELLREGQVFFIHNRVESID-----RAAARLRELVPE--ARI 930

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++   E VM SF      +L+ TT++E G+D+ +A+ +++E A+ FGL+QLHQ
Sbjct: 931  ATAHGQMNEDALEQVMVSFWEKKFDVLVCTTIVESGLDISNANTLVVERADVFGLSQLHQ 990

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG + +    LY P  PL++ ++ RL+ +    D   G  +A +DL+ R  G +
Sbjct: 991  LRGRVGRGRDRAYAYFLYPPDKPLTETAHDRLATIAQHNDLGAGMAVAMKDLEIRGAGNL 1050

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +QSG         +++  ++  A  + +    ++P    V       L + Y  +E 
Sbjct: 1051 LGGEQSGHI--ASVGFDMYVRMVGEAVAEYRKDKVEEPPEVKVELPVDASLPHDYVPSER 1108

Query: 694  FQF 696
             + 
Sbjct: 1109 LRL 1111


>gi|58038544|ref|YP_190508.1| transcription-repair coupling factor [Gluconobacter oxydans 621H]
 gi|58000958|gb|AAW59852.1| Transcription-repair coupling factor [Gluconobacter oxydans 621H]
          Length = 1173

 Score =  329 bits (844), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 136/451 (30%), Positives = 226/451 (50%), Gaps = 17/451 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W +   +  +   ++AG++      +  K    +       +  +     PF  T+ Q  
Sbjct: 567  WQARKAKMKSRIRVMAGELIKTAAARALKDAPTLA--PAEGLWDEFCARFPFVETEDQSR 624

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI D+L+DMS    M R++ GDVG GKT VAL A   A  +G Q  ++ P  +LA+QH+ 
Sbjct: 625  AIADVLEDMSAGRPMDRLVCGDVGFGKTEVALRAAFVAALSGMQVAVVVPTTLLARQHFR 684

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  +   + V  ++  +      K  E +A G   I++GTHAL   ++ + +L L+I
Sbjct: 685  SFSARFEGFPVNVAQLSRLITPKEATKVREGMADGTVDIVVGTHALLAKTVSFERLGLLI 744

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+  FGV  + +L       HVL ++ATP+PRTL L+  G  ++S I   P  R  ++
Sbjct: 745  IDEEQHFGVAHKERLKALREDVHVLTLSATPLPRTLQLSLSGVREMSLIATPPTDRLAVR 804

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T I P + +  + E ++     G + + + P++     ++   + ER   +     +   
Sbjct: 805  TFITPFDSV-MIREAIQRERFRGGQIFCVVPRL-----ADMDRMAERLTEIVPD--AKTV 856

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              HGR++  + E VM  F +G   +L++T ++E G+D+   + III  A+ FGL QL+QL
Sbjct: 857  QAHGRLTPTELERVMTEFADGKYDILLSTNIVESGLDMPSVNTIIIHRADMFGLGQLYQL 916

Query: 580  RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGRG++     + +    PLS +S  RL V++  +    GF +A  DL  R  G +L
Sbjct: 917  RGRVGRGKQRGYAYMTWPQTRPLSPSSEKRLEVMQTLDSLGAGFTLASHDLDLRGAGNLL 976

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            G +QSG         EL+  +LE A  D + 
Sbjct: 977  GDEQSGHI--KEVGIELYQQMLEDAVIDMRR 1005


>gi|46202166|ref|ZP_00053648.2| COG1197: Transcription-repair coupling factor (superfamily II
           helicase) [Magnetospirillum magnetotacticum MS-1]
          Length = 1131

 Score =  329 bits (844), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 142/450 (31%), Positives = 223/450 (49%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +   +       +A Q+  +    Q K   G  +     +  +     PF+ T+ Q  
Sbjct: 535 WQARKAKLKKRIRDIADQLIGIAA--QRKMRQGEALVPAEGLYDEFCARFPFAETEDQLR 592

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+D + D++    M R++ GDVG GKT VA+     A   G Q  ++ P  +LA+QHY 
Sbjct: 593 AIEDSIADLASGKPMDRLICGDVGFGKTEVAMRVAFVAALQGLQVAVVVPTTLLARQHYR 652

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+      + VE ++  +      +    +A G   I++GTHAL    I + +L L+I
Sbjct: 653 TFKERFAGLPVRVEQLSRLVTAKTASEVKAGVADGSVDIVVGTHALLAKGIGFKRLGLLI 712

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+  FGV  + +L Q     HVL +TATPIPRTL +   G  ++S I   P  R  ++
Sbjct: 713 IDEEQHFGVAHKERLKQLKADVHVLTLTATPIPRTLQMALSGVKEMSVIATPPIDRLAVR 772

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T ++P + +  + E +      G + +++CP++ +        V ER   L     +++A
Sbjct: 773 TFVLPYDPV-VLRESILRERYRGGQVFYVCPRLADID-----RVAERLAKLVPEVKTAVA 826

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HGR++  D E VM +F +    +L++T +IE GID+   + +II  A+ FGL QL+QL
Sbjct: 827 --HGRLAPADLEEVMVAFGDKQYDVLLSTNIIESGIDMPSVNTLIIHRADMFGLGQLYQL 884

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGRG+              LSK +  RL V++  +    GF +A  DL  R  G +L
Sbjct: 885 RGRVGRGKTRGYAYFTLPNDKVLSKAAEKRLQVMQALDTLGAGFQLASHDLDIRGAGNLL 944

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG         EL+  LLE A   AK
Sbjct: 945 GEEQSGHI--REVGVELYQQLLEEAVAAAK 972


>gi|159044110|ref|YP_001532904.1| transcription repair coupling factor [Dinoroseobacter shibae DFL
           12]
 gi|157911870|gb|ABV93303.1| transcription repair coupling factor [Dinoroseobacter shibae DFL
           12]
          Length = 1160

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 135/445 (30%), Positives = 233/445 (52%), Gaps = 17/445 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +   +       +A ++  +   +  ++   +    +  + +      P++ T  Q S
Sbjct: 556 WQAKKAKLKERIREMADKLIRIAAERALRRAPMLEPPPD--MWEAFSARFPYTETDDQLS 613

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+D++ D++    M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA+QHY+
Sbjct: 614 AIEDVVHDLAAGTPMDRLICGDVGFGKTEVAMRAAFIAALSGVQVAVIAPTTLLARQHYK 673

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                 +   + V  ++  +P        + +A G   I++GTHAL    ++++ L L+I
Sbjct: 674 SFADRFRGFPLEVRPLSRFVPAKAAADTRKGLAAGSVDIVVGTHALLAKGVRFHNLGLLI 733

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV  + +L +  +  HVL +TATPIPRTL L+  G  D+S I   P  R  I+
Sbjct: 734 IDEEQRFGVGHKERLKELRSDVHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVDRLSIR 793

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  + E L      G +++++ P+I++  E       +           S  
Sbjct: 794 TYVSEFDPV-TLREALLREHYRGGQSFFVVPRIKDIPEIEAFLRDQV-------PEVSFV 845

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +II  A+ FGL+QL+Q+
Sbjct: 846 VAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIIHRADMFGLSQLYQI 905

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R  G +L
Sbjct: 906 RGRVGRAKTRAYAYLTTKPRMKLTPAAEKRLRVLGSLDSLGAGFTLASQDLDIRGAGNLL 965

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIA 659
           G  QSG  +F     EL+ S+LE A
Sbjct: 966 GEAQSG--QFREVGFELYQSMLEEA 988


>gi|89897946|ref|YP_515056.1| transcription-repair coupling factor [Chlamydophila felis Fe/C-56]
 gi|89331318|dbj|BAE80911.1| transcription-repair coupling factor-superfamily II helicase
           [Chlamydophila felis Fe/C-56]
          Length = 1084

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 139/443 (31%), Positives = 210/443 (47%), Gaps = 14/443 (3%)

Query: 213 RKAKDFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
               +   +   R R L+   L+     LL +  Q            G+   K     P+
Sbjct: 497 PDLHNLNGSKWKRSRDLSEKSLVLYAEKLLQLEAQRSTAPSFIYPPHGEEVMKFAERFPY 556

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPI 330
             T  Q  AI+ I  DM     M R++ GD G GKT V + A   AV  G  Q ++M P 
Sbjct: 557 EETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAVCDGHRQVIVMVPT 616

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QHYE   +      I + +++       ++K  E  A G   I+IGTH L   ++
Sbjct: 617 TILANQHYETFSQRMAGLPIKIAVLSRFSEGKAKKKIFEDTAKGDVDILIGTHKLINKNL 676

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++    L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL ++  G  D+S IT 
Sbjct: 677 EFKNPGLLIIDEEQRFGVKVKDFLKERYPMVDCLTVSATPIPRTLYMSLSGARDLSLITM 736

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T I+  N  + +   L+  L  G +AY I  +IE         +     +L
Sbjct: 737 PPLDRLPVSTFILEHND-ETLSAALRHELLRGGQAYVIHNRIESIF-----RLGNTIRTL 790

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + IA+ HG+MS  +  S+   FK+    +L+AT +IE GID+ +A+ I+++ A+ 
Sbjct: 791 VPE--ARIAVAHGQMSSDELASIFQKFKDQEINVLVATALIENGIDIPNANTILVDQADK 848

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL--KNTEDGFLIAEEDLK 626
           FG+A L+Q++GRVGR    + C  L      LS  +  RL  L  +    G  IA  DL+
Sbjct: 849 FGMADLYQMKGRVGRWNRKAYCYFLVPHLDRLSVPAAKRLEALNKQEYGGGMKIALHDLE 908

Query: 627 QRKEGEILGIKQSGMPKFLIAQP 649
            R  G ILG  QSG    +    
Sbjct: 909 IRGAGNILGTDQSGHISAIGFNL 931


>gi|218130501|ref|ZP_03459305.1| hypothetical protein BACEGG_02090 [Bacteroides eggerthii DSM 20697]
 gi|317474007|ref|ZP_07933286.1| transcription-repair coupling factor [Bacteroides eggerthii
           1_2_48FAA]
 gi|217987380|gb|EEC53710.1| hypothetical protein BACEGG_02090 [Bacteroides eggerthii DSM 20697]
 gi|316909849|gb|EFV31524.1| transcription-repair coupling factor [Bacteroides eggerthii
           1_2_48FAA]
          Length = 1128

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 143/451 (31%), Positives = 229/451 (50%), Gaps = 19/451 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 513 WEKLKDRTKTKIKDIARDLIKLY--SQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSK 570

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 571 ATADVKADMESTRPMDRLVCGDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQ 630

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  +     VE ++     A  +  ++ +A G+ +I+IGTH +    +++  L L+I
Sbjct: 631 TFKERLKGLPCRVEYLSRARTAAQAKAVVKGLAGGEVNILIGTHRILGKDVKFKDLGLLI 690

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 691 IDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 750

Query: 460 TVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           T +   N  DE+I + +   +S   + +++  +I    E   ++++ER           I
Sbjct: 751 TEVHTFN--DEIITDAINFEMSRNGQVFFVNNRISNLVE--LKAMIER-----NIPDCRI 801

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ
Sbjct: 802 CIGHGQMEPAELEKIILDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQ 861

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           +RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +
Sbjct: 862 MRGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNM 921

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG +QSG    L    E +  +L  A  + K
Sbjct: 922 LGAEQSGFIADL--GYETYQKILSEAVHELK 950


>gi|269302679|gb|ACZ32779.1| transcription-repair coupling factor [Chlamydophila pneumoniae
           LPCoLN]
          Length = 1083

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 145/458 (31%), Positives = 218/458 (47%), Gaps = 16/458 (3%)

Query: 214 KAKDFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +   R R L    L+     LL +  Q            G+   K     P+ 
Sbjct: 498 DLHHLNSSKWKRSRDLTEKSLIVYAEKLLQLEAQRSTTPAFVYPPHGESVIKFAETFPYE 557

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIG 331
            T  Q   I  I  DM     M R++ GD G GKT V + A   AV  G  Q ++M P  
Sbjct: 558 ETPDQLKTIDQIYNDMMSPKLMDRLICGDAGFGKTEVIMRAAVKAVCDGHRQVIVMVPTT 617

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA QHYE  K+      I + +++       ++   E++A GQ  IIIGTH L   S++
Sbjct: 618 ILATQHYETFKERMAGLPIEIAVLSRFSQAKVQKLIYEQVASGQIDIIIGTHKLINKSLE 677

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +    L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL ++  G  D+S I   
Sbjct: 678 FKNPGLLIIDEEQRFGVKVKDNLKERYPMIDCLTVSATPIPRTLHMSLSGARDLSVIAMP 737

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R P+ T ++  N  + +   L+  L  G +AY I  +IE        ++ E   +L 
Sbjct: 738 PLDRLPVSTFVMEHN-TETLTAALRHELLRGGQAYVIHNRIESIY-----TLAETIRNLI 791

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               + I + HG+M   D  ++   FKN    +L+AT +IE GID+ +A+ I+I++A+ F
Sbjct: 792 PE--ARIGVAHGQMGAEDLSNIFTKFKNQKTNILVATALIENGIDIPNANTILIDHADKF 849

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL--KNTEDGFLIAEEDLKQ 627
           G+A L+Q++GRVGR  + + C  L      LS  +  RL+ L  +    G  IA  DL+ 
Sbjct: 850 GMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPAAKRLAALNKQEYGGGMKIALHDLEI 909

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           R  G ILG  QSG    +     L+  LL+ A    K 
Sbjct: 910 RGAGNILGTDQSGHIGTIGFN--LYCKLLKKAVSALKK 945


>gi|86138342|ref|ZP_01056916.1| transcription-repair coupling factor [Roseobacter sp. MED193]
 gi|85824867|gb|EAQ45068.1| transcription-repair coupling factor [Roseobacter sp. MED193]
          Length = 1153

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 136/451 (30%), Positives = 230/451 (50%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        ++      ++     P+  T
Sbjct: 538 DRLGGGAWQAKKAKLKERIREMADKLIRIAAERALRRAPAMDPPPHAWEEFSARFPYQET 597

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI++++ D++    M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA
Sbjct: 598 DDQLRAIQEVMADLTSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVVAPTTLLA 657

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH     +  +   + V  ++  +      K  E +A G   I+IGTHAL   +I++  
Sbjct: 658 RQHAASFAERFRGFPLEVRQLSRFVSAKEAAKTREGMAKGTVDIVIGTHALLAKNIRFNN 717

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 718 LGLLIIDEEQHFGVGHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVD 777

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P+I +  E            L E  
Sbjct: 778 RLAIRTYVSEFDAV-TLREALLREHYRGGQSFYVVPRISDLPEIE--------AFLKEQL 828

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++  A+ FGL
Sbjct: 829 PELTYVVAHGQMAPGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFGL 888

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           +QL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R
Sbjct: 889 SQLYQIRGRVGRSKTRAYAYLTTKPRQRLTPAAEKRLRVLGSLDTLGAGFTLASQDLDIR 948

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG  +      EL+ S+LE A
Sbjct: 949 GAGNLLGEEQSGQMRD--VGYELYQSMLEEA 977


>gi|15618800|ref|NP_225086.1| transcription-repair coupling [Chlamydophila pneumoniae CWL029]
 gi|15836424|ref|NP_300948.1| transcription-repair coupling [Chlamydophila pneumoniae J138]
 gi|16752145|ref|NP_445512.1| transcription-repair coupling factor [Chlamydophila pneumoniae
           AR39]
 gi|33242253|ref|NP_877194.1| transcription-repair coupling factor [Chlamydophila pneumoniae
           TW-183]
 gi|4377210|gb|AAD19029.1| Transcription-Repair Coupling [Chlamydophila pneumoniae CWL029]
 gi|7189888|gb|AAF38755.1| transcription-repair coupling factor [Chlamydophila pneumoniae
           AR39]
 gi|8979265|dbj|BAA99099.1| transcription-repair coupling [Chlamydophila pneumoniae J138]
 gi|33236764|gb|AAP98851.1| transcription-repair coupling factor [Chlamydophila pneumoniae
           TW-183]
          Length = 1085

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 145/458 (31%), Positives = 218/458 (47%), Gaps = 16/458 (3%)

Query: 214 KAKDFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  +   R R L    L+     LL +  Q            G+   K     P+ 
Sbjct: 500 DLHHLNSSKWKRSRDLTEKSLIVYAEKLLQLEAQRSTTPAFVYPPHGESVIKFAETFPYE 559

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIG 331
            T  Q   I  I  DM     M R++ GD G GKT V + A   AV  G  Q ++M P  
Sbjct: 560 ETPDQLKTIDQIYNDMMSPKLMDRLICGDAGFGKTEVIMRAAVKAVCDGHRQVIVMVPTT 619

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA QHYE  K+      I + +++       ++   E++A GQ  IIIGTH L   S++
Sbjct: 620 ILATQHYETFKERMAGLPIEIAVLSRFSQAKVQKLICEQVASGQIDIIIGTHKLINKSLE 679

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +    L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL ++  G  D+S I   
Sbjct: 680 FKNPGLLIIDEEQRFGVKVKDNLKERYPMIDCLTVSATPIPRTLHMSLSGARDLSVIAMP 739

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R P+ T ++  N  + +   L+  L  G +AY I  +IE        ++ E   +L 
Sbjct: 740 PLDRLPVSTFVMEHN-TETLTAALRHELLRGGQAYVIHNRIESIY-----TLAETIRNLI 793

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               + I + HG+M   D  ++   FKN    +L+AT +IE GID+ +A+ I+I++A+ F
Sbjct: 794 PE--ARIGVAHGQMGAEDLSNIFTKFKNQKTDILVATALIENGIDIPNANTILIDHADKF 851

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL--KNTEDGFLIAEEDLKQ 627
           G+A L+Q++GRVGR  + + C  L      LS  +  RL+ L  +    G  IA  DL+ 
Sbjct: 852 GMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPAAKRLAALNKQEYGGGMKIALHDLEI 911

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           R  G ILG  QSG    +     L+  LL+ A    K 
Sbjct: 912 RGAGNILGTDQSGHIGTIGFN--LYCKLLKKAVSALKK 947


>gi|326772339|ref|ZP_08231624.1| transcription-repair coupling factor [Actinomyces viscosus C505]
 gi|326638472|gb|EGE39373.1| transcription-repair coupling factor [Actinomyces viscosus C505]
          Length = 778

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 133/456 (29%), Positives = 221/456 (48%), Gaps = 17/456 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +       +AG++  L   +      G   + +     ++    P++ T  Q 
Sbjct: 151 DWAKTKSKARKAVREIAGELVRLYAARAA--TTGHAFSPDTPWQTELEEAFPYTETPDQL 208

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           S I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L  QH 
Sbjct: 209 STIDEVKADMEKAQPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVSQHA 268

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E   +      + V  ++     A   K LE +  G   +++GTH L    +++  L LV
Sbjct: 269 ETFTERYAGFPVTVGALSRFQDAAESAKILEGLEKGSVDVVVGTHRLITGQVKFKDLGLV 328

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S +   P  R PI
Sbjct: 329 IIDEEQRFGVEHKETLKALRTNVDVLSMSATPIPRTLEMAVTGLREMSTLATPPEDRHPI 388

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            T +       +V   ++  L    + +++  ++E+           R   L     + +
Sbjct: 389 LTYVGAY-ETKQVSAAIRRELLREGQVFFVHNRVEDIDA-----TAARLAELVPE--ARV 440

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HG+M++   E+V+DSF      +L+ TT++E G+DV +A+ +I++ A+  GL+QLHQ
Sbjct: 441 ATAHGQMNEHQLEAVIDSFWRKETDVLVCTTIVETGLDVSNANTLIVDRADRMGLSQLHQ 500

Query: 579 LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGRG E +    LY    PL++ +  RL  +    D   G  +A +DL+ R  G +
Sbjct: 501 LRGRVGRGRERAYAYFLYPSDKPLTETALERLRTIATNTDLGAGMQVAMKDLEIRGSGNL 560

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           LG +QSG         +L+  ++  A    K  L +
Sbjct: 561 LGGEQSGHI--AGVGFDLYVRMVSEAVAAYKKALAR 594


>gi|224282806|ref|ZP_03646128.1| transcription-repair coupling factor [Bifidobacterium bifidum NCIMB
            41171]
 gi|313139965|ref|ZP_07802158.1| transcription-repair coupling factor [Bifidobacterium bifidum NCIMB
            41171]
 gi|313132475|gb|EFR50092.1| transcription-repair coupling factor [Bifidobacterium bifidum NCIMB
            41171]
          Length = 1199

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 128/458 (27%), Positives = 231/458 (50%), Gaps = 17/458 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 597  DWAATKAKARKHVHEIAEDLVKLYSARQR--TKGFAFSPDTPWQKELEDAFPYQETTDQL 654

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+  DM +   M R++ GDVG GKT +A+ A   A++ G Q  ++ P  +L QQH+
Sbjct: 655  TTIDDVKSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHH 714

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++         + +E +  G   ++IGTH L    I++  L LV
Sbjct: 715  ETFTERYEGFPVTVAAMSRFQTTKEINETIEGLETGGVDVVIGTHKLLNPKIKFKDLGLV 774

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 775  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 834

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  ++++  ++  +        L     + +
Sbjct: 835  LTYVGAYED-AQVTAAVRRELLRGGQVFYVHNRVQDIAKTAAKIH-----ELVPE--ARV 886

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 887  GIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 946

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 947  LRGRVGRGRERAYAYFLYDPSKPMTQQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 1006

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            LG +QSG  +      +L+  ++  A +  K     +P
Sbjct: 1007 LGDEQSGHIE--GVGFDLYVRMVSEAVEQYKEPERTEP 1042


>gi|126726506|ref|ZP_01742347.1| transcription-repair coupling factor [Rhodobacterales bacterium
           HTCC2150]
 gi|126704369|gb|EBA03461.1| transcription-repair coupling factor [Rhodobacterales bacterium
           HTCC2150]
          Length = 1157

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 140/446 (31%), Positives = 232/446 (52%), Gaps = 19/446 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +           +A ++  +   +  +    +    +  + +      PF  T+ Q  
Sbjct: 549 WQAKKARMKERIREMANRLIQVAAERALRTAPMLEAPHD--MWESFSARFPFQETEDQLG 606

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+ + +D+ +   M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA+QHY+
Sbjct: 607 AIEAVAEDLGRGLPMDRLVCGDVGFGKTEVAMRAAFVAAMSGVQVAVIAPTTLLARQHYK 666

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +   I V  ++  +       A E I  G A II+GTHA+   S+++  L L+I
Sbjct: 667 SFAERFRGFPIEVRQLSRFVSTKDAHDAREAINRGTADIIVGTHAVLAKSVRFNNLGLLI 726

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGVQ + +L Q  +  HVL +TATPIPRTL L+  G  ++S I   P  R  I+
Sbjct: 727 IDEEQKFGVQHKERLKQMRSDIHVLTLTATPIPRTLQLSLSGVRELSIIGTPPVDRLAIR 786

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T +   + +  + E L      G +++++ P+I +  E            L +H    S 
Sbjct: 787 TYVTEFDSV-TLREALLREHYRGGQSFYVVPRISDLPEIE--------EFLRDHVPEVSF 837

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
              HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +II  A+ FGLAQL+Q
Sbjct: 838 ITAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIIHRADMFGLAQLYQ 897

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           +RGRVGR +  +   L   P   L+ ++  RL VL + +    GF +A +DL  R  G +
Sbjct: 898 IRGRVGRSKTRAYAYLTTRPRKKLTPSAEKRLRVLGSLDSLGAGFTLASQDLDIRGAGNL 957

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIA 659
           LG +QSG  +      EL+ S+LE A
Sbjct: 958 LGEEQSGQMRD--VGFELYQSMLEEA 981


>gi|78357082|ref|YP_388531.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219487|gb|ABB38836.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 1152

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 134/443 (30%), Positives = 224/443 (50%), Gaps = 18/443 (4%)

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
            S ++ R A + +    + +   RK  K     P+N    + ++   +  F  T  Q  A
Sbjct: 562 ASKSKARKAIERIAHDLVEMYAWRKVAKGYRYSPVN---DMYREFEASFGFEETPDQARA 618

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I+D+L DM +   M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QH++ 
Sbjct: 619 IEDVLDDMERAEPMDRLVCGDVGFGKTEVALRAAFRAAMDGKQVALLCPTTVLAEQHFQT 678

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
            +       + V +++  + +  +++ L     GQ  I+IGTH +  D +    L L+I+
Sbjct: 679 FRSRLGQFPVNVGMLSRFVSRQRQKEVLAACERGQIDILIGTHRILSDDVILPNLSLLIL 738

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+ RFGV+ + +L +      VL +TATPIPRTL L+  G  ++S I   P  RKP+KT
Sbjct: 739 DEEQRFGVRHKERLKKMRRNVDVLTLTATPIPRTLQLSMSGIRELSVIETAPPERKPVKT 798

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            +I  +  D + E L   L    + +W+  +++  +      V E   SL     + + +
Sbjct: 799 ALIDRD-PDILREVLLRELQREGQVFWVHNRVQGLE-----RVAEYVRSLVPD--ARVGM 850

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG+MS+   E  M  F +    +L+ T ++E G+D   A+ ++++ A+ FGL QL+QLR
Sbjct: 851 AHGQMSEKALEETMHKFWHAELDVLVCTAIVESGLDFPRANTLVVDQAQMFGLGQLYQLR 910

Query: 581 GRVGRGEEISSCILLYH-----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           GRVGR +  +  + +       P L++     +  +     GF +A EDL+ R  G ILG
Sbjct: 911 GRVGRSDRQAHAVFVVPDVDGVPELARKRLKIILEMDYLGAGFQVAMEDLRLRGAGNILG 970

Query: 636 IKQSGMPKFLIAQPELHDSLLEI 658
             QSG    +    +++  +LE 
Sbjct: 971 EVQSGHM--VKIGLDMYLEMLEE 991


>gi|99081190|ref|YP_613344.1| transcription-repair coupling factor [Ruegeria sp. TM1040]
 gi|99037470|gb|ABF64082.1| transcription-repair coupling factor [Ruegeria sp. TM1040]
          Length = 1149

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 139/451 (30%), Positives = 232/451 (51%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        ++      ++     P+  T
Sbjct: 538 DKLGGGAWQAKKARLKERIREMADRLIRIAAERALRKAPAMDPPPHAWEEFSARFPYQET 597

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI+D++ D++    M R++ GDVG GKT VA+ A   A  +G Q  I+AP  +LA
Sbjct: 598 DDQLRAIEDVISDLNSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVAPTTLLA 657

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH    K+  +   + V  ++  +      +  E +A G   I++GTHAL   +I++  
Sbjct: 658 RQHAAAFKERFRGFPLEVRQLSRFVTSKEASQTREGMAKGTVDIVVGTHALLAKNIRFQN 717

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 718 LGLLIIDEEQHFGVAHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVD 777

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + I  + E L      G +++++ P+I +  E            L E  
Sbjct: 778 RLAIRTYVTEFDAI-TIREALLREHYRGGQSFYVVPRISDLPEIE--------AFLQEQL 828

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S  + +G+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++  A+ FGL
Sbjct: 829 PELSYVVANGQMAAGELDDRMNAFYDGKYDILLATTIVESGLDIPTANTMVVHRADMFGL 888

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           AQL+Q+RGRVGR +  +   L   P   L+ ++  RL VL + +    GF +A +DL  R
Sbjct: 889 AQLYQIRGRVGRSKTRAYAYLTTKPRQRLTDSAEKRLRVLGSLDTLGAGFTLASQDLDIR 948

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG  +      EL+ S+LE A
Sbjct: 949 GAGNLLGEEQSGQMRD--VGYELYQSMLEEA 977


>gi|120602306|ref|YP_966706.1| transcription-repair coupling factor [Desulfovibrio vulgaris DP4]
 gi|120562535|gb|ABM28279.1| transcription-repair coupling factor [Desulfovibrio vulgaris DP4]
 gi|311233705|gb|ADP86559.1| transcription-repair coupling factor [Desulfovibrio vulgaris RCH1]
          Length = 1159

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 135/429 (31%), Positives = 221/429 (51%), Gaps = 18/429 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            +S  + R A +++ A  + +   RK  K     PI   G++ ++   +  F  T  Q  
Sbjct: 562 QSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPI---GELYREFEASFGFEETPDQAR 618

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+D+L+DM +   M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QHY+
Sbjct: 619 AIQDVLEDMDKPVPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQHYQ 678

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +       + V +++  + +  + + L   A G   I+IGTH L  D ++   L L++
Sbjct: 679 TFRSRLAGFPVNVGMLSRFVSKQKQTEVLAAAAKGHVDILIGTHRLLSDDVRLPNLGLLV 738

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+ + KL Q       L +TATPIPRTL L+  G  ++S I   P  RKP+ 
Sbjct: 739 LDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLSMSGIRELSVIETAPPERKPVA 798

Query: 460 TVIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           T +I   R D  ++ + +  ++   + +W+  +++  +        E    L     + +
Sbjct: 799 TALIE--RDDAALKSILEREIAREGQVFWVHNRVQGLE-----RTTEYVRKLVPD--ARV 849

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+M++   E  M  F +G   +L+ T ++E G+D   A+ +I++ A+ FGL QL+Q
Sbjct: 850 GMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLGQLYQ 909

Query: 579 LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
           LRGRVGR +  +  I +      LS  +  R+ V   +     GF +A EDL+ R  G I
Sbjct: 910 LRGRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVAMEDLRIRGAGNI 969

Query: 634 LGIKQSGMP 642
           LG  QSG  
Sbjct: 970 LGEAQSGHM 978


>gi|225850639|ref|YP_002730873.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase
           mfd) [Persephonella marina EX-H1]
 gi|225645015|gb|ACO03201.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase
           mfd) [Persephonella marina EX-H1]
          Length = 947

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 147/457 (32%), Positives = 243/457 (53%), Gaps = 19/457 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLM-RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           W +  R+     + +A Q+  L   RKQ +++   P+ VE  + +   R+ P+  T  Q 
Sbjct: 365 WRNLKRKVKNSLKKIAFQLVKLYTERKQIRRD---PLVVENDLIEAFERSFPYIETPDQL 421

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AIKDI +D+S    M R++ GDVG GKT VA+ A+      G Q++++ P  +L+ QHY
Sbjct: 422 KAIKDIKRDLSSDRPMERVICGDVGFGKTEVAIRAVFINAVNGKQSLVLVPTTVLSYQHY 481

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
              K+  +   ++VE ++    +       +R+  G+  +IIGTH    +++++  L L+
Sbjct: 482 RNFKERLEPFGVVVENLSRLKSKKETEDIFKRVKEGKIDVIIGTHKALNENLKFKNLGLL 541

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+HRFGV+ + K+         L MTATPIPRTL +   G  D+S I+  P GR   
Sbjct: 542 VIDEEHRFGVRAKEKIKALKKDVDTLYMTATPIPRTLNMALSGLKDMSVISTPPEGRVET 601

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           KT +   +  D + + +   L  G + +++  +IE  K        ER + L   F  + 
Sbjct: 602 KTFVSIFSE-DLIKKAVNFELERGGQVFYLHNRIESIK--------ERADHLSSLFRGAR 652

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I I HG+M   + E ++  F      +L++T++IE GID+  A+ +IIE A+ FGLAQL+
Sbjct: 653 IGIAHGKMRPKEIEKIILEFIERKIDILVSTSIIETGIDIPTANTLIIERADLFGLAQLY 712

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            LRGRVGRG   + C LL  P +++N+  R+ V+        G  ++ ED++ R  G IL
Sbjct: 713 HLRGRVGRGNIQAYCYLLLPPQITENAEKRIDVILRLTRPGSGLKVSIEDMQIRGVGNIL 772

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           G++QSG         E++  LL+ A  +      ++P
Sbjct: 773 GVEQSGHI--KAVGYEMYLKLLQEAINEEMDRREREP 807


>gi|224534488|ref|ZP_03675064.1| transcription-repair coupling factor [Borrelia spielmanii A14S]
 gi|224514165|gb|EEF84483.1| transcription-repair coupling factor [Borrelia spielmanii A14S]
          Length = 1129

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 144/439 (32%), Positives = 230/439 (52%), Gaps = 19/439 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + ++        P+  T  Q +
Sbjct: 532 WIKNKANAKKRIEEIADELIELYSKRESIKGIKYP--KDNELQLLFESEFPYDETPDQIT 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q V+++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVVVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +     ++ L+ +  G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKTNSEKRILKELKSGEIDIIIGTHKILSKKFSCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPKNRIKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE      ++++E+         + 
Sbjct: 770 AYLESFSELLIKHAIEN---ELSRDGQVFLVNHNIEEL--YYLKTLIEKLT-----PYAR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++ I+ E++M  F     ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGIEIENIMHDFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    D   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSDLGAGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQPEL 651
           +LG +Q G  + +     L
Sbjct: 940 LLGREQHGEIESIGLDYYL 958


>gi|86749967|ref|YP_486463.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            HaA2]
 gi|86572995|gb|ABD07552.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            HaA2]
          Length = 1171

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 142/453 (31%), Positives = 232/453 (51%), Gaps = 18/453 (3%)

Query: 224  ARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
             + R A  +    QIA  L++   +        ++VE  +  +     P+  T+ Q +AI
Sbjct: 572  WQARKAKLKNRIRQIAGELIKVAAERHLREAPKLHVEPHLYDEFCARFPYEETEDQLAAI 631

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
               L D+ +   M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA+QH +  
Sbjct: 632  NAALGDLERGMPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTF 691

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
             +  +   + V   +  +      +  + +A GQ  I++GTHAL    I++  L LV+VD
Sbjct: 692  TERFRGFPVNVGQASRLVSPKELTQVKKGLAEGQIDIVVGTHALLGKGIKFKDLGLVVVD 751

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+  FGV  + KL Q  +  HVL ++ATPIPRTL L   G  D+S I   P  R  ++T 
Sbjct: 752  EEQHFGVTHKEKLKQLRSEVHVLTLSATPIPRTLQLAMTGVRDLSIIASPPVDRLAVRTF 811

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520
            + P + +  + E L      G +A+++ P+I++  E          + L +H     +A+
Sbjct: 812  VAPHDPL-MIREALLRERYRGGQAFYVVPRIDDLAEVK--------DFLDKHVPEMKVAV 862

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+M     E +M +F +    +L++TT++E G+D+ +A+ +I+  A+ FGLAQL+QLR
Sbjct: 863  AHGQMPPTVIEDIMSAFYDAKYDILLSTTIVESGLDIPNANTLIVHRADMFGLAQLYQLR 922

Query: 581  GRVGRGE-EISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGI 636
            GRVGR +    +   L    ++  +  RL VL++ E    GF +A  DL  R  G +LG 
Sbjct: 923  GRVGRSKLRAYALFTLPQHNITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGE 982

Query: 637  KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            +QSG         EL+  +LE A  + K  +++
Sbjct: 983  EQSGHI--KEVGFELYQQMLEEAITNLKAGVSE 1013


>gi|46580312|ref|YP_011120.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449729|gb|AAS96379.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 1160

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 135/429 (31%), Positives = 221/429 (51%), Gaps = 18/429 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            +S  + R A +++ A  + +   RK  K     PI   G++ ++   +  F  T  Q  
Sbjct: 563 QSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPI---GELYREFEASFGFEETPDQAR 619

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+D+L+DM +   M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QHY+
Sbjct: 620 AIQDVLEDMDKPVPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQHYQ 679

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +       + V +++  + +  + + L   A G   I+IGTH L  D ++   L L++
Sbjct: 680 TFRSRLAGFPVNVGMLSRFVSKQKQTEVLAAAAKGHVDILIGTHRLLSDDVRLPNLGLLV 739

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+ + KL Q       L +TATPIPRTL L+  G  ++S I   P  RKP+ 
Sbjct: 740 LDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLSMSGIRELSVIETAPPERKPVA 799

Query: 460 TVIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           T +I   R D  ++ + +  ++   + +W+  +++  +        E    L     + +
Sbjct: 800 TALIE--RDDAALKSILEREIAREGQVFWVHNRVQGLE-----RTTEYVRKLVPD--ARV 850

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+M++   E  M  F +G   +L+ T ++E G+D   A+ +I++ A+ FGL QL+Q
Sbjct: 851 GMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLGQLYQ 910

Query: 579 LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEI 633
           LRGRVGR +  +  I +      LS  +  R+ V   +     GF +A EDL+ R  G I
Sbjct: 911 LRGRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVAMEDLRIRGAGNI 970

Query: 634 LGIKQSGMP 642
           LG  QSG  
Sbjct: 971 LGEAQSGHM 979


>gi|311064109|ref|YP_003970834.1| transcription-repair coupling factor [Bifidobacterium bifidum
            PRL2010]
 gi|310866428|gb|ADP35797.1| Mfd Transcription-repair coupling factor [Bifidobacterium bifidum
            PRL2010]
          Length = 1199

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 128/458 (27%), Positives = 231/458 (50%), Gaps = 17/458 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 597  DWAATKAKARKHVHEIAEDLVKLYSARQR--TKGFAFSPDTPWQKELEDAFPYQETTDQL 654

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+  DM +   M R++ GDVG GKT +A+ A   A++ G Q  ++ P  +L QQH+
Sbjct: 655  TTIDDVKSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHH 714

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++         + +E +  G   ++IGTH L    I++  L LV
Sbjct: 715  ETFTERYEGFPVTVAAMSRFQTTKEINETIEGLETGGVDVVIGTHKLLNPKIKFKDLGLV 774

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 775  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 834

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  ++++  ++  +        L     + +
Sbjct: 835  LTYVGAYED-AQVTAAVRRELLRGGQVFYVHNRVQDIAKTAAKIH-----ELVPE--ARV 886

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 887  GIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 946

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 947  LRGRVGRGRERAYAYFLYDPSKPMTQQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 1006

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            LG +QSG  +      +L+  ++  A +  K     +P
Sbjct: 1007 LGDEQSGHIE--GVGFDLYVRMVSEAVEQYKEPERTEP 1042


>gi|332186186|ref|ZP_08387932.1| transcription-repair coupling factor [Sphingomonas sp. S17]
 gi|332014001|gb|EGI56060.1| transcription-repair coupling factor [Sphingomonas sp. S17]
          Length = 1155

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 136/451 (30%), Positives = 225/451 (49%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +       +AG++      +  +         +       +   P+  T  Q+ 
Sbjct: 560 WQRRKSKMKERIREIAGELIATAAERALRPGEVA--EPDSAGYPAFVDRFPYEETDDQDR 617

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI D+L D++    M R++ GDVG GKT VAL A   A  AG Q  ++ P  +LA+QHY 
Sbjct: 618 AIDDVLGDLTAGKPMDRLVVGDVGFGKTEVALRAAFVAAMAGMQVAVVCPTTLLARQHYN 677

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                 +   I +  ++  +  +  +K  +  A G   I++GTHAL   ++++ +L LVI
Sbjct: 678 NFLARFEGFPIKIGRLSRLVTASEAKKVKDGAASGDIDIVVGTHALLAKNVEFKRLGLVI 737

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+ RFGV  + +L       H+L +TATPIPRTL +   G  ++S I   P  R  ++
Sbjct: 738 VDEEQRFGVTHKERLKALKADVHMLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLAVR 797

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T ++P + +  + E L      G +++ + P++ +  +       E              
Sbjct: 798 TYVMPWDPV-VLREALLREHYRGGQSFLVTPRVADLPDIEEYLRKEV-------PEVRYV 849

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+MS  + E  M +F +   ++L++TT+IE GID+  A+ +I+  A+ FGLAQL+QL
Sbjct: 850 VAHGQMSPTEVEERMSAFYDRKFEVLVSTTIIESGIDIPSANTMIVNRADRFGLAQLYQL 909

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR +  +   ++  P   +++ +  RL VL + +    GF +A  DL  R  G +L
Sbjct: 910 RGRVGRSKTRAYAYMVTPPERMMTEAAEKRLKVLSDLDSLGAGFQLASHDLDIRGAGNLL 969

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG         EL+ S+LE A  +AK 
Sbjct: 970 GDEQSGHI--KEVGYELYQSMLEEAILEAKA 998


>gi|160888992|ref|ZP_02069995.1| hypothetical protein BACUNI_01412 [Bacteroides uniformis ATCC 8492]
 gi|156861459|gb|EDO54890.1| hypothetical protein BACUNI_01412 [Bacteroides uniformis ATCC 8492]
          Length = 1129

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 138/450 (30%), Positives = 226/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 513 WEKLKDRTKTKIKDIARDLIKLY--SQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSK 570

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 571 ATSDVKVDMESARPMDRLVCGDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQ 630

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  +     VE ++        +  ++ +A G+ +I+IGTH +    +++  L L+I
Sbjct: 631 TFKERLKGLPCRVEYLSRARTAVQAKAVVKGLAEGEVNILIGTHRILGKDVKFKDLGLLI 690

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 691 IDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 750

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + + +   +S   + +++  +I    E   ++++ER           + 
Sbjct: 751 TEVHTFNE-EIIADAVNFEMSRNGQVFFVNNRISNLVE--LKAMIERH-----IPDCRVC 802

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 803 IGHGQMEPAELEKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 862

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 863 RGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 922

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 923 GAEQSGFIADL--GYETYQKILSEAVHELK 950


>gi|325282867|ref|YP_004255408.1| transcription factor CarD [Deinococcus proteolyticus MRP]
 gi|324314676|gb|ADY25791.1| transcription factor CarD [Deinococcus proteolyticus MRP]
          Length = 1054

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 156/526 (29%), Positives = 257/526 (48%), Gaps = 32/526 (6%)

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPAR-ERLAYDELLAGQIALLLMRKQFKKEIGIPI 255
           +    +        +P +   F+    ++ +  A          LL+     +   G   
Sbjct: 426 EQLSLLRRHPGTTDDPPRLSSFDKKDWSKAKARAQKNAEEVAARLLVQYAARQVTPGTAF 485

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
             + +  ++I +N  +  T  Q +A+K+ L+D+ + N   R++ GDVG GKT VAL A  
Sbjct: 486 PPQPEWDEQIEQNFAYELTADQRTALKETLRDLEKANPADRLISGDVGFGKTEVALRAAH 545

Query: 316 AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
             V  G Q  ++ P  +LA QH +  ++  +   + VE ++        R+ L  +A G+
Sbjct: 546 RVVGHGAQVAMLVPTTLLADQHLQTFRERLKGLPVRVEGLSRFTSDKEAREILSGLAAGR 605

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA----------------- 418
             I+IGTH L    I++  L L+IVDE+HRFGV Q+ KL                     
Sbjct: 606 VDIVIGTHRLLSGDIEFKNLGLIIVDEEHRFGVGQKEKLRAMRGLPSTPEGGKLELPEGT 665

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                L ++ATPIPRTL ++ +G  D+S I   P GRKPI+TV+ P + +  V + +   
Sbjct: 666 KVVDTLALSATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTVLTPFDPV-TVRDAIVSE 724

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +  G K ++I  +I      +         SL     + I + HGRMS+ + E +M  F+
Sbjct: 725 IERGGKVFYIHDRIASIGARSLY-----LRSLVPE--ARIGVAHGRMSEEELEEIMKGFE 777

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L++TT++E G+D+ +A+ I+IE A+  GLAQL+QLRGRVGR E+ +   L Y P
Sbjct: 778 EGAFDVLLSTTIVETGLDIPEANTILIERADRLGLAQLYQLRGRVGRREQTAYAYLFYPP 837

Query: 599 PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
            +++N+  RL  + + +D   G L+AE+D++ R  G ILG +Q G  +      +++  L
Sbjct: 838 RMTENAQRRLWAIADLQDLGSGHLLAEKDMEIRGVGNILGEEQHG--QVQAVSVDVYTEL 895

Query: 656 LEIARKDAKHI-LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
           L  A    K   L   P +T     S R+    +  +E  +    G
Sbjct: 896 LAQAVAKLKGEKLEPVPSVTIDLPVSARLDPEYFALDEEARIATYG 941


>gi|163736366|ref|ZP_02143785.1| transcription-repair coupling factor [Phaeobacter gallaeciensis
           BS107]
 gi|161390236|gb|EDQ14586.1| transcription-repair coupling factor [Phaeobacter gallaeciensis
           BS107]
          Length = 1155

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 137/451 (30%), Positives = 230/451 (50%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        ++      ++     P+  T
Sbjct: 538 DRLGGGAWQAKKAKLKERIREMADRLIRVAAERALRKAPMMDPPPHAWEEFSARFPYQET 597

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI ++++D+   + M R++ GDVG GKT VA+ A   A  +G Q  I+AP  +LA
Sbjct: 598 DDQLRAISEVMEDLQSGSPMDRLICGDVGFGKTEVAMRAAFIAAMSGVQVAIVAPTTLLA 657

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH     +  +   + V  ++  +      K  E +A G   I++GTHAL   S+++  
Sbjct: 658 RQHAAAFAQRFRGFPLEVRQLSRFVTAKEAAKTREGMAKGTIDIVVGTHALLAKSVRFQN 717

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 718 LGLLIIDEEQHFGVAHKERLKQMRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVD 777

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P+I +  +            L E  
Sbjct: 778 RLAIRTYVSEFDAV-TIREALLREHYRGGQSFYVVPRITDLPDVE--------AFLQEQL 828

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S  + HG+++  D +  M++F +G   +L+ATT++E G+D+  A+ +++  A+ FGL
Sbjct: 829 PELSYVVAHGQLAAGDLDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMVVHRADMFGL 888

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           AQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R
Sbjct: 889 AQLYQIRGRVGRSKTRAYAYLTTKPRVRLTPGAEKRLRVLGSLDTLGAGFSLASQDLDIR 948

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG  +      EL+ S+LE A
Sbjct: 949 GAGNLLGEEQSGQMRD--VGYELYQSMLEEA 977


>gi|270293887|ref|ZP_06200089.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275354|gb|EFA21214.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1129

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 138/450 (30%), Positives = 226/450 (50%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 513 WEKLKDRTKTKIKDIARDLIKLY--SQRREEKGFQYSSDSFLQRELEASFIYEDTPDQSK 570

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 571 ATSDVKADMESARPMDRLVCGDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQ 630

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  +     VE ++        +  ++ +A G+ +I+IGTH +    +++  L L+I
Sbjct: 631 TFKERLKGLPCRVEYLSRARTAVQAKAVVKGLAEGEVNILIGTHRILGKDVKFKDLGLLI 690

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 691 IDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 750

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + + +   +S   + +++  +I    E   ++++ER           + 
Sbjct: 751 TEVHTFNE-EIIADAVNFEMSRNGQVFFVNNRISNLVE--LKAMIERH-----IPDCRVC 802

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 803 IGHGQMEPAELEKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 862

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +L
Sbjct: 863 RGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNML 922

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 923 GAEQSGFIADL--GYETYQKILSEAVHELK 950


>gi|163741099|ref|ZP_02148491.1| transcription-repair coupling factor [Phaeobacter gallaeciensis
           2.10]
 gi|161385452|gb|EDQ09829.1| transcription-repair coupling factor [Phaeobacter gallaeciensis
           2.10]
          Length = 1155

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 137/451 (30%), Positives = 230/451 (50%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        ++      ++     P+  T
Sbjct: 538 DRLGGGAWQAKKAKLKERIREMADRLIRVAAERALRKAPMMDPPPHAWEEFSARFPYQET 597

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI ++++D+   + M R++ GDVG GKT VA+ A   A  +G Q  I+AP  +LA
Sbjct: 598 DDQLRAISEVMEDLQSGSPMDRLICGDVGFGKTEVAMRAAFIAAMSGVQVAIVAPTTLLA 657

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH     +  +   + V  ++  +      K  E +A G   I++GTHAL   S+++  
Sbjct: 658 RQHAAAFAQRFRGFPLEVRQLSRFVTAKEAAKTREGMAKGTIDIVVGTHALLAKSVRFQN 717

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 718 LGLLIIDEEQHFGVAHKERLKQMRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVD 777

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P+I +  +            L E  
Sbjct: 778 RLAIRTYVSEFDAV-TIREALLREHYRGGQSFYVVPRITDLPDVE--------AFLQEQL 828

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S  + HG+++  D +  M++F +G   +L+ATT++E G+D+  A+ +++  A+ FGL
Sbjct: 829 PELSYVVAHGQLAAGDLDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMVVHRADMFGL 888

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           AQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R
Sbjct: 889 AQLYQIRGRVGRSKTRAYAYLTTKPRVRLTPGAEKRLRVLGSLDTLGAGFSLASQDLDIR 948

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG  +      EL+ S+LE A
Sbjct: 949 GAGNLLGEEQSGQMRD--VGYELYQSMLEEA 977


>gi|254486916|ref|ZP_05100121.1| transcription-repair coupling factor [Roseobacter sp. GAI101]
 gi|214043785|gb|EEB84423.1| transcription-repair coupling factor [Roseobacter sp. GAI101]
          Length = 1174

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 137/446 (30%), Positives = 228/446 (51%), Gaps = 19/446 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W S           +A ++  +   +  ++     ++    +        P++ T  Q S
Sbjct: 566 WQSKKARLKERIREMADKLIRIAAERALRRAPI--MDPPPGMWDAFSARFPYTETDDQMS 623

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI D++ D++  N M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA+QHY+
Sbjct: 624 AINDVIDDLTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVIAPTTLLARQHYK 683

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +   + V  ++  +         E +A G   ++IGTHAL   +I++  L L+I
Sbjct: 684 SFAERFRGFPLEVRQLSRFVSTKDASATREGMAKGTVDVVIGTHALLAKNIKFNNLGLLI 743

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+  FGV  + +L    T  HVL +TATPIPRTL L+  G  D+S I   P  R  I+
Sbjct: 744 IDEEQHFGVGHKERLKAMRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLAIR 803

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T +   + +  + E L      G +++++ P+I +  E            L       + 
Sbjct: 804 TYVSEFDTV-TLREALLREHYRGGQSFYVVPRISDLAEIE--------AFLKAQLPELTY 854

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +I+  A+ FGLAQL+Q
Sbjct: 855 LVAHGQMAAGELDDRMNAFYDGKYDILLATTIVESGLDIPTANTMIVHRADMFGLAQLYQ 914

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           +RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R  G +
Sbjct: 915 IRGRVGRSKTRAYAYLTTKPRAKLTATAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNL 974

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIA 659
           LG +QSG  +      EL+ S+LE A
Sbjct: 975 LGEEQSGQMRD--VGFELYQSMLEDA 998


>gi|83311564|ref|YP_421828.1| transcription-repair coupling factor [Magnetospirillum magneticum
           AMB-1]
 gi|82946405|dbj|BAE51269.1| Transcription-repair coupling factor [Magnetospirillum magneticum
           AMB-1]
          Length = 1134

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 222/450 (49%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +   +       +A Q+  +    Q K   G  +     +  +     PF+ T+ Q  
Sbjct: 538 WQARKAKLKKRIRDIADQLIGIAA--QRKMRQGEALVPAEGLYDEFCARFPFAETEDQMR 595

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+D + D++    M R++ GDVG GKT VA+     A   G Q  ++ P  +LA+QHY 
Sbjct: 596 AIEDSIADLASGKPMDRLICGDVGFGKTEVAMRVAFVAALQGLQVAVVVPTTLLARQHYR 655

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+      + VE ++  +      +    +A G   +++GTHAL    I + +L L+I
Sbjct: 656 TFKERFSGLPVRVEQLSRLVTAKTASEVKAGVADGSVDVVVGTHALLAKGIGFKRLGLLI 715

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+  FGV  + +L Q     HVL +TATPIPRTL +   G  ++S I   P  R  ++
Sbjct: 716 IDEEQHFGVAHKERLKQLKADVHVLTLTATPIPRTLQMALSGVKEMSVIATPPIDRLAVR 775

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T ++P + +  + E +      G + +++CP++ +        V ER   L     +++A
Sbjct: 776 TFVLPYDPV-VLRESILRERYRGGQVFYVCPRLADID-----RVAERLAKLVPEVKTAVA 829

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HGR++  D E VM +F      +L++T +IE GID+   + +II  A+ FGL QL+QL
Sbjct: 830 --HGRLAPADLEEVMVAFGEKQYDVLLSTNIIESGIDMPSVNTLIIHRADMFGLGQLYQL 887

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGRG+              LSK +  RL V++  +    GF +A  DL  R  G +L
Sbjct: 888 RGRVGRGKTRGYAYFTLPNDKVLSKAAEKRLQVMQALDTLGAGFQLASHDLDIRGAGNLL 947

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG         EL+  LLE A   AK
Sbjct: 948 GEEQSGHI--REVGVELYQQLLEEAVAAAK 975


>gi|310287260|ref|YP_003938518.1| transcription-repair coupling factor (superfamily II helicase)
            [Bifidobacterium bifidum S17]
 gi|309251196|gb|ADO52944.1| Transcription-repair coupling factor (superfamily II helicase)
            [Bifidobacterium bifidum S17]
          Length = 1199

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 128/458 (27%), Positives = 231/458 (50%), Gaps = 17/458 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 597  DWAATKAKARKHVHEIAEDLVKLYSARQR--TKGFAFSPDTPWQKELEDAFPYQETTDQL 654

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+  DM +   M R++ GDVG GKT +A+ A   A++ G Q  ++ P  +L QQH+
Sbjct: 655  TTIDDVKSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHH 714

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++         + +E +  G   ++IGTH L    I++  L LV
Sbjct: 715  ETFTERYEGFPVTVAAMSRFQTTKEINETIEGLETGGVDVVIGTHKLLNPKIKFKDLGLV 774

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 775  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 834

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  ++++  ++  +        L     + +
Sbjct: 835  LTYVGAYED-AQVTAAVRRELLRGGQVFYVHNRVQDIAKTAAKIH-----ELVPE--ARV 886

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 887  GIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 946

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 947  LRGRVGRGRERAYAYFLYDPSKPMTQQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 1006

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
            LG +QSG  +      +L+  ++  A +  K     +P
Sbjct: 1007 LGDEQSGHIE--GVGFDLYVRMVSEAVEQYKEPERTEP 1042


>gi|237743139|ref|ZP_04573620.1| transcription-repair coupling factor [Fusobacterium sp. 7_1]
 gi|229433435|gb|EEO43647.1| transcription-repair coupling factor [Fusobacterium sp. 7_1]
          Length = 979

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 142/460 (30%), Positives = 250/460 (54%), Gaps = 12/460 (2%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             ++    +++      ++ ++ +     G   + +  + ++     PF+ T +Q  AI+
Sbjct: 405 KRKKAKLSEDIEIFAKEIIKIQAKRNLGNGFKFSKDTVMQEEFEETFPFTETPAQLKAIE 464

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           D+ +DM     M R++ GDVG GKT VA+ A   AV    Q +++ P  +LA+QHYE   
Sbjct: 465 DVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDSKQVILLVPTTVLAEQHYERFS 524

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D I++  + L+I+DE
Sbjct: 525 ERFKNYPVHIEILSRVQSKKEQVESLKRIENGSADLVIGTHRLLSDDIKFKDVGLLIIDE 584

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I   P GR+ I T  
Sbjct: 585 EQKFGVKAKEKLKKIKGDIDVLTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIHTEY 644

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
           I  N+ + + + +   +S   + ++I   ++  +     S V+    L   +   +  IH
Sbjct: 645 IDNNK-NLIKDIILSEISREGQVFYIFNSVKRIE-----SKVKEIRELLPEYI-KVDYIH 697

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +IIE  E  GL+Q++QLRGR
Sbjct: 698 GQMLPRDIKKNIQEFENGNIDVLVATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGR 757

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDLKQRKEGEILGIKQSG 640
           +GR  + S C +L +   +KN+  R   ++  ++  G  +A ED K R  GEILG KQ G
Sbjct: 758 IGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGLDLAMEDSKIRGVGEILGEKQHG 817

Query: 641 MPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
             +   + +    L++ +L++  +  + +   D +L   R
Sbjct: 818 AVETFGYNLYMKMLNEEILKLKGEAEEELDDVDVELNFPR 857


>gi|330994820|ref|ZP_08318742.1| Transcription-repair-coupling factor [Gluconacetobacter sp. SXCC-1]
 gi|329758081|gb|EGG74603.1| Transcription-repair-coupling factor [Gluconacetobacter sp. SXCC-1]
          Length = 1160

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 138/448 (30%), Positives = 221/448 (49%), Gaps = 17/448 (3%)

Query: 224 ARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            + R A  +     +A  L+R            +  E  +  +     PF  T+ Q  AI
Sbjct: 556 WQSRKAKMKQRIRDMAGELIRTAAARALREAPALTPEDGMWDEFCARFPFVETEDQSRAI 615

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            D+L DM+    M R++ GDVG GKT VAL A   A  +G Q  ++ P  +LA+QHY   
Sbjct: 616 ADVLDDMASGKPMDRLVCGDVGFGKTEVALRAAFVAAMSGAQVAVVVPTTLLARQHYRTF 675

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
                   + V  ++  +         + +A G  +I+IGTHAL   ++++  L L+IVD
Sbjct: 676 SARFAGLPVNVAQLSRMVTPKEATAVRKGLADGTVNIVIGTHALLAKTVKFADLGLLIVD 735

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+  FGV  + KL       HVL ++ATP+PRTL L   G  ++S I   P  R  ++T 
Sbjct: 736 EEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLALTGVREMSLIATPPTDRLAVRTF 795

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           I+P + +  + E ++     G + + + P+IE+        +  R + +     + +   
Sbjct: 796 IMPFDSV-VIREAIQRERFRGGQVFCVVPRIEDLD-----RMATRLSEIVPD--ARLVQA 847

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HGR++  + E VM  F +G   +L++T ++E G+D+   + +II  A+ FGL QL+QLRG
Sbjct: 848 HGRLTPTELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLGQLYQLRG 907

Query: 582 RVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGI 636
           RVGRG++     L +     LS  +  RL V++  +    GF +A  DL  R  G +LG 
Sbjct: 908 RVGRGKQRGYAYLTWPQTHVLSAAAQKRLEVMQTLDTLGAGFTLASHDLDLRGAGNLLGD 967

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAK 664
           +QSG         EL+  +LE A  D +
Sbjct: 968 EQSGHI--REVGIELYQQMLEDAVADLR 993


>gi|258645650|ref|ZP_05733119.1| transcription-repair coupling factor [Dialister invisus DSM 15470]
 gi|260403014|gb|EEW96561.1| transcription-repair coupling factor [Dialister invisus DSM 15470]
          Length = 1135

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 148/579 (25%), Positives = 261/579 (45%), Gaps = 33/579 (5%)

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP-TGLSVDLFKKIIVEAL 179
           R+    GK K+++    +    Y+              V ++   G+  D     I  A 
Sbjct: 440 RRYKAGGKGKQIRYFSDLEPGDYVVQRVH--GIGKYIGVKTIELEGVHRDYI--TIQYAG 495

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
           +    LP      L +         A + +         +W    R+     E LA ++ 
Sbjct: 496 ADKLYLPMEQIASLEKYIGPEGQTPALHRMG------GVQWDKVRRKAKKSIEELAEKL- 548

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
            L +    +   GI    +    ++     PF  T  Q  AI+ + + M +   M  ++ 
Sbjct: 549 -LAVYADREITEGISFLPDTAEQREFEDTFPFVETDDQLEAIQAVKRGMERPQPMDMLIC 607

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVG GKT VA+ A+   V +G QA+++ P  +L+ QHY+  K    +  I + ++    
Sbjct: 608 GDVGFGKTEVAMRAVFKCVMSGFQAMVLCPTTVLSSQHYKTFKGRMDSFGINIALLNRFT 667

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               +++ L ++A G+  ++IGTHA+    I+   L L++VDE+ RFGV Q+ K    + 
Sbjct: 668 TMREKKEILSKLASGEMDVVIGTHAVLSKKIECRHLGLLVVDEEQRFGVMQKEKWKSWSK 727

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
              +L ++ATPIPRTL ++  G  D+  +T+ PA R  I+T +   +    V + +    
Sbjct: 728 KLDILTLSATPIPRTLHMSLTGVRDMVAMTQPPANRHAIQTYVTEYDDT-IVKDAILHEK 786

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSF 537
           + G + Y+I  +IE  +             L +   S +  A+ +G+M     E +M  F
Sbjct: 787 ARGGQTYFIYNRIESIRAME--------AHLRDILPSDVTIAVAYGQMDGRTLEKIMVDF 838

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                 +L+ TT+IE G+D  +A+ +++ +A+  GL+Q++Q+RGRVGR E+I+     Y 
Sbjct: 839 FEKKYDVLLCTTIIENGVDQPNANTMLVYDADKLGLSQIYQMRGRVGRSEKIARAWFFYR 898

Query: 598 --PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
               LS+ +  RL+ ++       GF IA  DL+ R  G +LG +Q G           +
Sbjct: 899 QGKVLSEAAEKRLNTIREFTELGSGFKIAMRDLEIRGAGNLLGAEQHG--NIAGVGFATY 956

Query: 653 DSLLE--IARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
            ++LE  ++R  A+      P         +R   YL +
Sbjct: 957 CNMLEDTVSRLRAERENKPVPKKMPDTTVELRQDAYLDE 995


>gi|62185446|ref|YP_220231.1| putative transcription-repair coupling factor [Chlamydophila
           abortus S26/3]
 gi|62148513|emb|CAH64284.1| putative transcription-repair coupling factor [Chlamydophila
           abortus S26/3]
          Length = 1085

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 139/443 (31%), Positives = 210/443 (47%), Gaps = 14/443 (3%)

Query: 213 RKAKDFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
               +   +   R R L+   L+     LL +  Q            G+   K   + P+
Sbjct: 498 PDLHNLNGSKWKRSRDLSEKSLVLYAEKLLQLEAQRSTTPAFIYPPHGEEVIKFEESFPY 557

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPI 330
             T  Q  AI+ I  DM     M R++ GD G GKT V + A   AV  G  Q ++M P 
Sbjct: 558 EETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAVCDGQRQVIVMVPT 617

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QHYE   +      I + +++        +K  E  A G   I+IGTH L   ++
Sbjct: 618 TILANQHYETFTQRMAGLPINIAVLSRFSEGKALKKIFEDTAQGNVDILIGTHKLINKNL 677

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++    L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL ++  G  D+S IT 
Sbjct: 678 EFKNPGLLIIDEEQRFGVKVKDFLKERYPTIDCLTVSATPIPRTLYMSLSGARDLSLITM 737

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T ++  N  + V   L+  L  G +AY I   IE         +     +L
Sbjct: 738 PPLDRLPVSTFVLEHNE-ETVSAALRHELLRGGQAYVIHNLIESIF-----RLGNTIRTL 791

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + IA+ HG+MS  +  S+   FK+    +L+AT +IE GID+ +A+ I++++A+ 
Sbjct: 792 VPE--ARIAVAHGQMSSDELASIFQKFKDKETNILVATALIENGIDIPNANTILVDHADK 849

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL--KNTEDGFLIAEEDLK 626
           FG+A L+Q++GRVGR    + C  L      LS  +  RL  L  +    G  IA  DL+
Sbjct: 850 FGMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLQALNKQEYGGGMKIALHDLE 909

Query: 627 QRKEGEILGIKQSGMPKFLIAQP 649
            R  G ILG  QSG    +    
Sbjct: 910 IRGAGNILGTDQSGHISAIGFNL 932


>gi|329113371|ref|ZP_08242152.1| Transcription-repair-coupling factor [Acetobacter pomorum DM001]
 gi|326697196|gb|EGE48856.1| Transcription-repair-coupling factor [Acetobacter pomorum DM001]
          Length = 1142

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 148/464 (31%), Positives = 234/464 (50%), Gaps = 21/464 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +   +       +AG++      +  K+   + +  EG+   +     PF  T  Q  
Sbjct: 539 WQNRKSQMKKRIRDMAGELIRTAAMRALKEAPEL-VPPEGQW-DEFCARFPFVETDDQAR 596

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI D+L+DMS    M R++ GDVG GKT VAL A   A  +GGQ  ++ P  +LA+QHY 
Sbjct: 597 AIADVLEDMSSGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGGQVAVVVPTTLLARQHYR 656

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                 +   I V  ++  +         + IA G  +I+IGTHAL   ++Q+  L L+I
Sbjct: 657 TFAARFEGFPIKVAQLSRMVTGKEATAVRKGIADGSVNIVIGTHALLAKTVQFASLELLI 716

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+  FGV  + KL       HVL ++ATP+PRTL L+  G  ++S I   P  R  ++
Sbjct: 717 IDEEQHFGVSHKEKLKALREDVHVLTLSATPLPRTLQLSLSGVREMSLIATPPTDRLAVR 776

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T I+P + +  + E ++     G + + + P+IE+        + ER  ++     + + 
Sbjct: 777 TFIMPFDSV-VIREAIQRERFRGGQIFCVAPRIEDLD-----RLAERLTAIVPD--ARLI 828

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HGR+S  + E VM  F +G   +L++T ++E G+D+   + +II  A+ FGL QL+QL
Sbjct: 829 QAHGRLSATELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLGQLYQL 888

Query: 580 RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGRG++     L +     LS ++  RL V++  +    GF +A  DL  R  G +L
Sbjct: 889 RGRVGRGKQRGYAYLTWPQTHVLSASAEKRLEVMQTLDTLGAGFTLASHDLDLRGAGNLL 948

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIA----RKDAKHILTQDPDLT 674
           G +QSG         EL+  +LE A    R D      +D D T
Sbjct: 949 GDQQSGH--VREVGIELYQQMLEDAVADLRSDKNRRAAEDRDWT 990


>gi|251772784|gb|EES53346.1| transcription-repair coupling factor [Leptospirillum
           ferrodiazotrophum]
          Length = 1145

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 133/445 (29%), Positives = 230/445 (51%), Gaps = 17/445 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+          E ++  + +L  R++  +      + E  + ++  ++ P+  T  QE 
Sbjct: 549 WSQTKSRVRKQVEKISADLVMLYARRKAAEG--FAFSPESILTREFDQSFPYDLTTDQEE 606

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+ +L DM     M R++ GDVG GKT VA+ A   AV  G Q  ++ P  +LA QH+E
Sbjct: 607 AIQAVLSDMESPTPMDRLILGDVGFGKTEVAMRAAIRAVADGKQVAVLVPTTLLALQHHE 666

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K       + +E ++  +  A ++   ER+  G+  I++GT AL  +++++  L L+I
Sbjct: 667 TFKNRFAGFPVRIESLSRMVSPAEQKLVRERLRRGETDIVVGTTALLANAVEFRDLGLLI 726

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+Q+  L  +      L ++ATPIPRTL +   G   IS I   P GRK IK
Sbjct: 727 IDEEQRFGVRQKENLASRFPNVDRLTLSATPIPRTLQMAMSGLKGISFIMTPPQGRKAIK 786

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T I+  +R + + E +   L+   + ++I  ++                +L     + +A
Sbjct: 787 TAIMRFDR-ERIREVIDRELAREGQVFFIHNRVSSIA-----RWARYLAALFPE--AGVA 838

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG+M + + E+VM  F     ++L++TT++E G+D+  A+ I+I  A+ FG+A+L+QL
Sbjct: 839 YAHGQMGEEEIEAVMGKFLRRESRILVSTTIVESGLDIPYANTILINRADMFGIAELYQL 898

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGRG + +    +      L + +  RL  L        G+ IA  DL+ R  G +L
Sbjct: 899 RGRVGRGGQQAYAYFITPSEEALGEVARKRLHTLTTHSGLGSGYQIAMRDLEIRGAGSLL 958

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIA 659
           G +Q+G  +  +   +L+  ++E A
Sbjct: 959 GHQQTG--QVAMVGLDLYLEMVEEA 981


>gi|126736472|ref|ZP_01752213.1| transcription-repair coupling factor [Roseobacter sp. CCS2]
 gi|126714010|gb|EBA10880.1| transcription-repair coupling factor [Roseobacter sp. CCS2]
          Length = 1148

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 232/464 (50%), Gaps = 20/464 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    QIA  L+R   + +      ++    +  + L   P+  T
Sbjct: 538 DKLGGGAWQAKKAKLKERIRQIAERLIRVAAERELRTAPALDPPDGLWDQFLARFPYVET 597

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q +AI+D+L D+     M R++ GDVG GKT VA+ A   A  +G Q  I+AP  +LA
Sbjct: 598 DDQLAAIEDVLTDLGSGKPMDRLICGDVGFGKTEVAIRAAFIAALSGVQVAIIAPTTLLA 657

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY+   +  +   + V  ++  +         + +  G   I++GTHAL    +++  
Sbjct: 658 RQHYQNFAERFRGFPVTVRPLSRFVSTKDANLTRDGLTKGTVDIVVGTHALLAKGVRFKN 717

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+++DE+ +FGVQ + +L Q  T  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 718 LGLLVIDEEQKFGVQHKERLKQLRTDVHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPID 777

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + I  V E L      G +++ + P+I +  E          + L    
Sbjct: 778 RLAIRTYVSEFDTI-TVREALLREHYRGGQSFVVVPRISDMAEME--------DFLKREV 828

Query: 515 TSSIAI-IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                I   G+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +I+  ++ FGL
Sbjct: 829 PEVTYISATGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIVWRSDMFGL 888

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN---TEDGFLIAEEDLKQR 628
           +QL+Q+RGRVGR +  +   L   P   L+  +  RL VL +      GF +A +DL  R
Sbjct: 889 SQLYQIRGRVGRSKTRAYAYLTTKPRQKLTDTAQKRLRVLGSIDTLGAGFTLASQDLDIR 948

Query: 629 KEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQ 669
             G +LG +QSG  +   + + Q  L D +  I    A+ I+  
Sbjct: 949 GAGNLLGEEQSGQMREVGYELYQQMLEDQIAAIRSGQAEGIIDD 992


>gi|220919566|ref|YP_002494870.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans
            2CP-1]
 gi|219957420|gb|ACL67804.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans
            2CP-1]
          Length = 1233

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 144/467 (30%), Positives = 233/467 (49%), Gaps = 25/467 (5%)

Query: 225  RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
            R+    ++LL     LL +        G       ++ ++     P+  T  Q  AI+D+
Sbjct: 583  RKARVKEQLLKMAAELLDIYAARAAHPGFAYPEPDQLFREFEAEFPWEETPDQAKAIEDV 642

Query: 285  LQDMSQKN-------RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            ++DM +          M R++ GDVG GKT VA+ A   AV A  Q  ++ P  +LA QH
Sbjct: 643  VRDMRKGRQGPAAAAPMDRLVCGDVGYGKTEVAMRAAMLAVLAKKQVAVLVPTTVLAAQH 702

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
                ++  +   + +E ++        + AL+  A G+  I++GTH L    + +  L L
Sbjct: 703  ERTFRERFKGYPVRIEAVSRMRTSDEVKHALKAAADGKVDILVGTHRLLAADVSFKDLGL 762

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            V+VDE+ RFGV  + +L +      VL +TATPIPRTL ++  G  D+S I   P  R+ 
Sbjct: 763  VVVDEEQRFGVAHKERLKKLRRLVDVLTLTATPIPRTLHMSLAGVRDLSIIATPPEDRRA 822

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            I+T ++  +    V E ++  L  G + +++  ++               N L     + 
Sbjct: 823  IRTFVMKFD-PAAVKEAIETELKRGGQVFFVHNRVRSIHAMQRF-----LNELVPK--AR 874

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + + HG+M +   E VM  F +    +L+AT++IE G+D+  A+ II+  A+HFGLAQL+
Sbjct: 875  VGVAHGQMGEGKLEHVMTQFVDKELDVLLATSIIESGLDIPSANTIIVNRADHFGLAQLY 934

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            Q+RGRVGR  E +   LL     P++K++  RL VL+   +   GF IA  DL+ R  G 
Sbjct: 935  QIRGRVGRSRERAYAYLLVPARRPVTKDAQKRLEVLQRFSELGAGFKIASHDLELRGAGN 994

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ---DPDLTSV 676
            +LG  QSG  +      EL+  LL+ A ++ K    +   DPD+   
Sbjct: 995  LLGKDQSGQIE--AVGFELYQELLDEAVRELKGEAPREEIDPDVQLP 1039


>gi|85708435|ref|ZP_01039501.1| transcription-repair coupling factor [Erythrobacter sp. NAP1]
 gi|85689969|gb|EAQ29972.1| transcription-repair coupling factor [Erythrobacter sp. NAP1]
          Length = 1163

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 146/459 (31%), Positives = 230/459 (50%), Gaps = 18/459 (3%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFS 272
                   +  + R    E +      L+     +     P    E     + +   P+ 
Sbjct: 547 PLDRLGGEAWQKRRAKLKERITAIAGELMKVAAERALKKAPRFEAEDASFNQFVDRFPWE 606

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q++AI D+L+D+     M R++ GDVG GKT VAL A   A  +G Q  ++AP  +
Sbjct: 607 ETDDQDAAIADVLRDLESGKPMDRLVCGDVGFGKTEVALRAAFVAAMSGKQVAVVAPTTL 666

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QHYE  K+  +   + +  ++  +      +  E +A+G   +++GTHA+   S ++
Sbjct: 667 LARQHYENFKQRFEGFPLKLGRLSRLVSSKEAAETREGLANGTVDLVVGTHAILSKSTEF 726

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             L LVIVDE+ RFGV  + KL Q     H+L +TATPIPRTL +   G  ++S I   P
Sbjct: 727 KDLGLVIVDEEQRFGVTHKEKLKQLRADVHMLTLTATPIPRTLQMAMTGLRELSTIQTPP 786

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             R  ++T ++  + +  + E L      G +++ + P+I +  +            LHE
Sbjct: 787 VDRLAVRTYVMEWDDM-VMREALLREHHRGGQSFIVVPRISDMADVE--------EWLHE 837

Query: 513 HFTSSIAI-IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           +     AI  HG+M   + E  M +F +   ++L++TT++E G+D+  A+ III  A+ F
Sbjct: 838 NVPEVKAISAHGQMGAAEIEQRMSAFYDRKYEVLLSTTIVESGLDLPSANTIIIHRADRF 897

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLK 626
           GLAQL+QLRGRVGR +  +   L Y     LS+ +  RL VL + +    GF +A  DL 
Sbjct: 898 GLAQLYQLRGRVGRSKLRAYAYLTYEKDVQLSEVAEKRLKVLGDLDSLGAGFQLASHDLD 957

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R  G +LG +QSG         EL+ S+LE A   AK 
Sbjct: 958 IRGAGNLLGDEQSGHI--REVGFELYQSMLEDAILAAKA 994


>gi|254420843|ref|ZP_05034567.1| transcription-repair coupling factor [Brevundimonas sp. BAL3]
 gi|196187020|gb|EDX81996.1| transcription-repair coupling factor [Brevundimonas sp. BAL3]
          Length = 1156

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 225/452 (49%), Gaps = 19/452 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +   +       +A  +  L  ++  ++     +     +  +     P+  T  Q +
Sbjct: 559 WQARKSKAKERLRAMAEGLIALAAKRALRETD--AVVPPPGLFAEFCARFPYEETDDQLN 616

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI D+L+D+ +   M R++ GDVG GKT VAL A       G Q  I+AP  +LA+QHY+
Sbjct: 617 AIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVAPTTLLARQHYK 676

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +      + V  ++  +      +    +  G   I++GTHA+  + + +  L LVI
Sbjct: 677 TFTERFAGWPVKVRQLSRMVGGKEASETRAGLKDGSVEIVVGTHAVLSEQVGFRDLGLVI 736

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+  FGV+ + KL       H+L +TATPIPRTL +   G  ++S I   P  R  ++
Sbjct: 737 VDEEQHFGVKHKEKLKSLRADVHLLTLTATPIPRTLQMALSGIREMSIIATPPVDRLAVR 796

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T + P + +  V E L      G +AY++ P++++               L E       
Sbjct: 797 TYVTPWDPV-LVREALLREKYRGGQAYYVAPRLKDLPAIE--------KFLREQVPEVKF 847

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            + HG+MS    E VM +F +G   +L++TT++E G+D+  A+ +++  A+ FGLAQL+Q
Sbjct: 848 VVGHGQMSATQLEEVMSAFYDGEYDVLVSTTIVESGLDIPTANTLVVHRADMFGLAQLYQ 907

Query: 579 LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           +RGRVGR +  +   L      P++ ++  RL VL++ ++   GF +A  DL QR  G +
Sbjct: 908 IRGRVGRSKARAFAYLTTDAVKPMTLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNL 967

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           LG +QSG         EL+  +LE A  + + 
Sbjct: 968 LGDEQSGHI--REVGVELYQQMLEDAVAELRE 997


>gi|260433551|ref|ZP_05787522.1| transcription-repair coupling factor [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417379|gb|EEX10638.1| transcription-repair coupling factor [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 1152

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 230/450 (51%), Gaps = 17/450 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        ++      ++     P+  T
Sbjct: 539 DKLGGGAWQAKKAKLKERIREMADRLIRIAAERALRKAPIMDPPPHAWEEFSARFPYQET 598

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + Q  AI D+++D+     M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA
Sbjct: 599 EDQLRAIADVMEDLHSGTPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVIAPTTLLA 658

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH    K   +   + V  ++  +     ++  E +A G   I+IGTHAL    I++  
Sbjct: 659 RQHAASFKDRFRGFPLEVRQLSRFVSAKEAQQTREGLAKGTVDIVIGTHALLAKGIRFQN 718

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 719 LGLLIIDEEQHFGVAHKERLKQLRSDVHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVD 778

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P+I +  E       E         
Sbjct: 779 RLAIRTYVSEFDAV-TIREALLREHYRGGQSFYVVPRISDLPEIE-----EFLKEQLPEL 832

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           T  +A  HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++  A+ FGLA
Sbjct: 833 TYVVA--HGQMAAGELDDRMNAFYDGKYDILLATTIVESGLDIPTANTMVVHRADMFGLA 890

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
           QL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R 
Sbjct: 891 QLYQIRGRVGRSKTRAYAYLTTKPRARLTPAAEKRLRVLGSLDTLGAGFTLASQDLDIRG 950

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            G +LG +QSG  +      EL+ S+LE A
Sbjct: 951 AGNLLGEEQSGQMRD--VGYELYQSMLEEA 978


>gi|254511931|ref|ZP_05123998.1| transcription-repair coupling factor [Rhodobacteraceae bacterium
           KLH11]
 gi|221535642|gb|EEE38630.1| transcription-repair coupling factor [Rhodobacteraceae bacterium
           KLH11]
          Length = 1151

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 135/450 (30%), Positives = 228/450 (50%), Gaps = 17/450 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        ++       +     P+  T
Sbjct: 539 DRLGGGAWQAKKAKLKERIREMADKLIRIAAERALRKAPIMDPPPHAWDEFSARFPYQET 598

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI ++++DM     M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA
Sbjct: 599 DDQLRAISEVMEDMHSGAPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVVAPTTLLA 658

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH    ++  +   + V  ++  +     ++  + +A G   I+IGTHAL    I++  
Sbjct: 659 RQHAASFRERFRGFPLEVRQLSRFVSAKEAQQTRDGLARGTVDIVIGTHALLAKGIRFNN 718

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 719 LGLLIIDEEQHFGVGHKERLKQLRSDVHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPID 778

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P++ +          E         
Sbjct: 779 RLAIRTYVSEFDAV-TIREALLREHYRGGQSFYVVPRVSDLPGIE-----EFLKEQLPEL 832

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           T  +A  HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++  A+ FGLA
Sbjct: 833 TYVVA--HGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFGLA 890

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
           QL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R 
Sbjct: 891 QLYQIRGRVGRSKTRAYAYLTTKPRQKLTATAEKRLRVLGSLDTLGAGFTLASQDLDIRG 950

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            G +LG +QSG  +      EL+ S+LE A
Sbjct: 951 AGNLLGEEQSGQMRD--VGYELYQSMLEEA 978


>gi|110634054|ref|YP_674262.1| transcription-repair coupling factor [Mesorhizobium sp. BNC1]
 gi|110285038|gb|ABG63097.1| transcription-repair coupling factor [Chelativorans sp. BNC1]
          Length = 1167

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 135/456 (29%), Positives = 230/456 (50%), Gaps = 19/456 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    ++A  L++   + +      I     +  +     P+  T
Sbjct: 562  DKLGGGAWQSRKAKLKKRLLEMAGQLIKLAAERQMRPAAKIMPPEGLYGEFAARFPYEET 621

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q++AI  +++D S    M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA
Sbjct: 622  DDQQTAIDAVIEDFSSGRPMDRLVCGDVGFGKTEVALRAAFLAAMEGLQVAVVVPTTLLA 681

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++  +       + V   +  +      +  + +A G   I++GTHAL  +SIQ+  
Sbjct: 682  RQHFKTFRDRFAGLPVTVRQASRLVTAKELAETKKGVADGTVDIVVGTHALLGNSIQFKN 741

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +     HVL ++ATPIPRTL L   G  ++S I   P  
Sbjct: 742  LGLLIIDEEQHFGVKHKERLKELKADVHVLTLSATPIPRTLQLALTGVRELSLIATPPVD 801

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G +++++ P+I +  E       E         
Sbjct: 802  RMAVRTFISPFDPL-VIRETLLRERYRGGQSFYVVPRISDLAEVK-----EFLAEQVPEL 855

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               +A  HG+++  + + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLA
Sbjct: 856  --KVATAHGQIAAGELDDIMNAFYDGKYDVLLSTTIVESGLDIPTANTLIVHRADMFGLA 913

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            QL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  R
Sbjct: 914  QLYQLRGRVGRS-KVRAYALFTLPANRTLTPTAERRLKVLQSLDALGAGFQLASHDLDIR 972

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
              G +LG +QSG         EL+  +LE A  + +
Sbjct: 973  GAGNLLGEEQSGHI--KEVGYELYQQMLEEAVAELR 1006


>gi|258542202|ref|YP_003187635.1| DNA helicase transcription-repair coupling factor [Acetobacter
            pasteurianus IFO 3283-01]
 gi|256633280|dbj|BAH99255.1| DNA helicase transcription-repair coupling factor [Acetobacter
            pasteurianus IFO 3283-01]
 gi|256636339|dbj|BAI02308.1| DNA helicase transcription-repair coupling factor [Acetobacter
            pasteurianus IFO 3283-03]
 gi|256639392|dbj|BAI05354.1| DNA helicase transcription-repair coupling factor [Acetobacter
            pasteurianus IFO 3283-07]
 gi|256642448|dbj|BAI08403.1| DNA helicase transcription-repair coupling factor [Acetobacter
            pasteurianus IFO 3283-22]
 gi|256645503|dbj|BAI11451.1| DNA helicase transcription-repair coupling factor [Acetobacter
            pasteurianus IFO 3283-26]
 gi|256648556|dbj|BAI14497.1| DNA helicase transcription-repair coupling factor [Acetobacter
            pasteurianus IFO 3283-32]
 gi|256651609|dbj|BAI17543.1| DNA helicase transcription-repair coupling factor [Acetobacter
            pasteurianus IFO 3283-01-42C]
 gi|256654600|dbj|BAI20527.1| DNA helicase transcription-repair coupling factor [Acetobacter
            pasteurianus IFO 3283-12]
          Length = 1158

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 148/464 (31%), Positives = 234/464 (50%), Gaps = 21/464 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W +   +       +AG++      +  K+   + +  EG+   +     PF  T  Q  
Sbjct: 555  WQNRKSQMKKRIRDMAGELIRTAAMRALKEAPEL-VPPEGQW-DEFCARFPFVETDDQAR 612

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI D+L+DMS    M R++ GDVG GKT VAL A   A  +GGQ  ++ P  +LA+QHY 
Sbjct: 613  AIADVLEDMSSGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGGQVAVVVPTTLLARQHYR 672

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  +   I V  ++  +         + IA G  +I+IGTHAL   ++Q+  L L+I
Sbjct: 673  TFAARFEGFPIKVAQLSRMVTGKEATAVRKGIADGSVNIVIGTHALLAKTVQFASLELLI 732

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+  FGV  + KL       HVL ++ATP+PRTL L+  G  ++S I   P  R  ++
Sbjct: 733  IDEEQHFGVSHKEKLKALREDVHVLTLSATPLPRTLQLSLSGVREMSLIATPPTDRLAVR 792

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T I+P + +  + E ++     G + + + P+IE+        + ER  ++     + + 
Sbjct: 793  TFIMPFDSV-VIREAIQRERFRGGQIFCVAPRIEDLD-----RLAERLTAIVPD--ARLI 844

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              HGR+S  + E VM  F +G   +L++T ++E G+D+   + +II  A+ FGL QL+QL
Sbjct: 845  QAHGRLSATELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLGQLYQL 904

Query: 580  RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGRG++     L +     LS ++  RL V++  +    GF +A  DL  R  G +L
Sbjct: 905  RGRVGRGKQRGYAYLTWPQTHVLSASAEKRLEVMQTLDTLGAGFTLASHDLDLRGAGNLL 964

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIA----RKDAKHILTQDPDLT 674
            G +QSG         EL+  +LE A    R D      +D D T
Sbjct: 965  GDQQSGH--VREVGIELYQQMLEDAVADLRSDKNRRAAEDWDWT 1006


>gi|320532549|ref|ZP_08033357.1| putative transcription-repair coupling factor [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135236|gb|EFW27376.1| putative transcription-repair coupling factor [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 598

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 133/456 (29%), Positives = 221/456 (48%), Gaps = 17/456 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +       +AG++  L   +      G   + +     ++    P++ T  Q 
Sbjct: 87  DWAKTKSKARKAVREIAGELVRLYAARAA--TTGHAFSPDSPWQTELEEAFPYTETPDQL 144

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           S I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L  QH 
Sbjct: 145 STIDEVKADMEKAQPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVSQHA 204

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E   +      + V  ++     A   K LE +  G   +++GTH L    +++  L LV
Sbjct: 205 ETFTERYAGFPVTVGALSRFQDAAESAKVLEGLEKGTVDVVVGTHRLITGQVRFKDLGLV 264

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S +   P  R PI
Sbjct: 265 IIDEEQRFGVEHKETLKALRTNVDVLSMSATPIPRTLEMAVTGLREMSTLATPPEDRHPI 324

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            T +       +V   ++  L    + +++  ++E+           R   L     + +
Sbjct: 325 LTYVGAY-ETKQVSAAIRRELLREGQVFFVHNRVEDIDA-----TAARLAELVPE--ARV 376

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HG+M++   E+V+DSF      +L+ TT++E G+DV +A+ +I++ A+  GL+QLHQ
Sbjct: 377 ATAHGQMNEHQLEAVIDSFWRKETDVLVCTTIVETGLDVSNANTLIVDRADRMGLSQLHQ 436

Query: 579 LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGRG E +    LY    PL++ +  RL  +    D   G  +A +DL+ R  G +
Sbjct: 437 LRGRVGRGRERAYAYFLYPSDKPLTETALERLRTIATNTDLGAGMQVAMKDLEIRGSGNL 496

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           LG +QSG         +L+  ++  A    K  L +
Sbjct: 497 LGGEQSGHI--AGVGFDLYVRMVSEAVAAYKKALAR 530


>gi|158422845|ref|YP_001524137.1| transcription-repair coupling factor [Azorhizobium caulinodans ORS
            571]
 gi|158329734|dbj|BAF87219.1| transcription-repair coupling factor [Azorhizobium caulinodans ORS
            571]
          Length = 1171

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 142/459 (30%), Positives = 229/459 (49%), Gaps = 19/459 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W +           +AG++  +   +Q  +     +     +  +     P+  T  QE+
Sbjct: 571  WQARKARMKKRIREMAGELIKIAAARQLSEAPR--LVPAAGLYDEFRARFPYEETDDQEA 628

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L D+S  + M R++ GDVG GKT VAL A  A   +G Q  ++ P  +LA+QH+ 
Sbjct: 629  AISAVLDDLSSGHPMDRLVCGDVGFGKTEVALRAAFAVALSGKQVAVVVPTTLLARQHFR 688

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +  +   + V   +  +         + +  G   I++GTHAL   +IQ+  L LVI
Sbjct: 689  TFSERFKGLPVNVAQASRMVTGKDLTAVKKGLTDGTVDIVVGTHALLGKTIQFRDLGLVI 748

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+  FGV  + +L    +  HVL +TATPIPRTL L   G  ++S I   P  R  ++
Sbjct: 749  VDEEQHFGVAHKERLKALRSEVHVLTLTATPIPRTLQLAMTGVRELSLIATPPVDRLAVR 808

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T + P + +  V E L      G +++++ P+I++          E    L +      +
Sbjct: 809  TFVTPFDPL-IVREALLRERYRGGQSFYVVPRIDDLA--------EVREFLEKSVPEVKV 859

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M+    E +M +F +G   +L++TT++E G+DV +A+ +I+  A+ FGLAQL+Q
Sbjct: 860  AVAHGQMAAGTLEDIMTAFYDGQYDVLLSTTIVESGLDVPNANTLIVHRADMFGLAQLYQ 919

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR +  +  I       P++  +  RL VL++ E    GF +A  DL  R  G +
Sbjct: 920  LRGRVGRAKARAYAIFSVPATKPITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNL 979

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            LG +QSG         EL+  +LE A    K  +T   D
Sbjct: 980  LGDEQSGHI--KEVGYELYQEMLEEAIAHLKAGITDYVD 1016


>gi|291296005|ref|YP_003507403.1| transcription factor CarD [Meiothermus ruber DSM 1279]
 gi|290470964|gb|ADD28383.1| transcription factor CarD [Meiothermus ruber DSM 1279]
          Length = 987

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 145/499 (29%), Positives = 246/499 (49%), Gaps = 23/499 (4%)

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            L  +  P +        +P         EW     +     E LA ++ +L  +++   
Sbjct: 373 YLPVEQLPLLKRHPGTTDDPPALSSLGKGEWKRSREKAAKDAEELAQRLLVLHAKREA-- 430

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
             G       +    I +N PF  T  Q  A+++ L+D+     M R++ GDVG GKT V
Sbjct: 431 TPGRAFGPLPEWDVLIEQNFPFELTPDQRKALEETLRDLEAPRPMERLISGDVGFGKTEV 490

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           AL A    V  G Q  ++ P  +LA+QH E  +K  +   + V  ++    +   R+ L 
Sbjct: 491 ALRAAFRVVGHGAQVAVLVPTTLLAEQHKETFQKRLEGLPVRVAALSRFTSERETREVLR 550

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +  G   I+IGTH L    +++  L L++VDE+HRFGV Q+ ++ +   A   L ++AT
Sbjct: 551 GLEQGTVDIVIGTHRLLSPDVRFKDLGLLVVDEEHRFGVGQKERIRELKEAVDTLYLSAT 610

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPR+L    +G  D+S I   P GRKPI+T++ P +    V + +   L  G KA+++ 
Sbjct: 611 PIPRSLYSALVGLRDLSSIQTPPPGRKPIRTLLAPYD-PALVRQGIMDELERGGKAFYVH 669

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            ++                +L     +   ++HG+M + + E  M +F  G   +L+ATT
Sbjct: 670 DRVATILARRRY-----LEALVPE--ARFGVVHGQMPEAEVEETMLAFAEGAFDVLLATT 722

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +IE G+D+ +A+ I++E A+  GLA L+QLRGRVGR ++ +   L +   L++ +  RL+
Sbjct: 723 IIESGLDIPEANTILVERADKLGLAALYQLRGRVGRRDQEAWAYLFHPLRLTEGAERRLA 782

Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            + +  D   G L+AE+D++ R  G +LG +Q G         E++  LL  A +  K  
Sbjct: 783 AIADLSDLGSGHLLAEKDMEIRGVGNLLGPEQHGHI--RAVSLEIYTELLSEAIRKLKGE 840

Query: 667 LTQDPDLTSVRGQSIRILL 685
              +P+    R  ++ + L
Sbjct: 841 -QTEPE----RHVTLDLQL 854


>gi|328543941|ref|YP_004304050.1| Mfd, transcription-repair coupling factor [polymorphum gilvum
           SL003B-26A1]
 gi|326413685|gb|ADZ70748.1| Mfd, transcription-repair coupling factor [Polymorphum gilvum
           SL003B-26A1]
          Length = 1166

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 138/451 (30%), Positives = 224/451 (49%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPT 274
           D       + R A  +    +IA  L+R    + +     VE       +     P+  T
Sbjct: 558 DRLGGGAWQARKARMKKRILEIADGLIRTAAARALKTAPVVETPEGAYDEFATRFPYEET 617

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + Q +AI  +  D++    M R++ GDVG GKT VAL A   A  +G Q  ++ P  +LA
Sbjct: 618 EDQLNAIDAVFADLASGRPMDRLVCGDVGFGKTEVALRAAFVAALSGRQVAVVVPTTLLA 677

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY+   +      + V   +  +      +  + +  G   I+IGTHAL    I +  
Sbjct: 678 RQHYKTFAERFHGLPVRVAQASRLVGAKDLAETRKGLVDGSVDIVIGTHALLGKGIGFRD 737

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV+ + +L +     HVL ++ATPIPRTL L   G  ++S I   P  
Sbjct: 738 LGLLIIDEEQHFGVKHKERLKELKADVHVLTLSATPIPRTLQLALTGVRELSLIATPPVD 797

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  ++T + P + I  V E L      G +++++CP++ +          E    L E  
Sbjct: 798 RLAVRTFVSPFDPI-VVREALLREHYRGGQSFYVCPRVSDLA--------ETAEFLAESV 848

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +A+ HG+M+    + VM++F  G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 849 PEVKVAVAHGQMAPGQLDDVMNAFYEGKYDVLLSTTIVESGLDIPTANTLIVHRADMFGL 908

Query: 574 AQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           AQL+QLRGRVGR +  +  +     +  L+  +  RL VL++ +    GF +A  DL  R
Sbjct: 909 AQLYQLRGRVGRSKVRAYALFTVPANKTLTATAERRLKVLQSLDTLGAGFQLASHDLDIR 968

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG         EL+  +LE A
Sbjct: 969 GAGNLLGEEQSGHI--REVGFELYQQMLEEA 997


>gi|150396613|ref|YP_001327080.1| transcription-repair coupling factor [Sinorhizobium medicae WSM419]
 gi|150028128|gb|ABR60245.1| transcription-repair coupling factor [Sinorhizobium medicae WSM419]
          Length = 1171

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 137/456 (30%), Positives = 230/456 (50%), Gaps = 19/456 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +     +A  L+R   +        +  +  +  +     P+  T
Sbjct: 568  DKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHTRHAPVLAAQDGVYDEFAARFPYDET 627

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q ++I  +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA
Sbjct: 628  EDQLNSIDAVRDDLGSGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGVQVAVVVPTTLLA 687

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH+    +  +   I ++  +  +         + +A G+  I++GTHAL   SI++  
Sbjct: 688  RQHFRTFSERFRGLPIRIQQASRLVGSKELALTKKEVAEGKTDIVVGTHALLGSSIKFAN 747

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  T  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 748  LGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 807

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G +++++CP++ +  E +     +         
Sbjct: 808  RMAVRTFISPFDAL-VIRETLMREHYRGGQSFYVCPRVSDLPEIHDFLKSDV-------P 859

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I+  A+ FGLA
Sbjct: 860  ELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGLA 919

Query: 575  QLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            QL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  R
Sbjct: 920  QLYQLRGRVGRS-KVRAFSLFTLPVNKTLTGPAERRLKVLQSLDTLGAGFQLASHDLDIR 978

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
              G +LG +QSG         EL+  +LE A  + K
Sbjct: 979  GAGNLLGEEQSGHI--KEVGFELYQQMLEEAVAELK 1012


>gi|114704427|ref|ZP_01437335.1| Mfd, transcription-repair coupling factor [Fulvimarina pelagi
            HTCC2506]
 gi|114539212|gb|EAU42332.1| Mfd, transcription-repair coupling factor [Fulvimarina pelagi
            HTCC2506]
          Length = 1172

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 132/455 (29%), Positives = 228/455 (50%), Gaps = 17/455 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +     +A  L+R   +        +N    +  +     P+  T
Sbjct: 564  DRLGGGAWQARKAKLKKRLLDMADGLIRVAAERAMRGAPQLNPPEGLFDEFAARFPYEET 623

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q +AI  ++ D++    M R++ GDVG GKT VAL A   A   G Q  I+ P  +LA
Sbjct: 624  DDQANAIDAVVDDLAAGRPMDRLICGDVGFGKTEVALRAAFVAAMNGLQVAIVVPTTLLA 683

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++   +  +   + V   +  +         + +  G   I++GTHAL    +++  
Sbjct: 684  RQHFKTFAERFRGLPLNVAQASRLVSGKELAATKKGVKDGTVDIVVGTHALLGKGVEFKS 743

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 744  LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 803

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  V E L      G +++++CP++ +          E  +      
Sbjct: 804  RMAVRTFIAPFDPL-VVRETLLRERYRGGQSFYVCPRVSDIAGVK-----EFLDDQVPEL 857

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               +A+ HG+M+  + + +M++F  G   +L++TT++E G+DV  A+ +I+  A+ FGL+
Sbjct: 858  --KVAVAHGQMAASELDDIMNAFYEGQYDVLLSTTIVESGLDVPTANTMIVHRADMFGLS 915

Query: 575  QLHQLRGRVGRGEEISSCILLYHPPLSKN--SYTRLSVLKNTE---DGFLIAEEDLKQRK 629
            QL+Q+RGRVGR ++ +  ++      +    +  RL VL++ +    GF +A  DL QR 
Sbjct: 916  QLYQIRGRVGRSKQRAYALMTIPANKTPTKGADRRLKVLQSLDTLGAGFQLATHDLDQRG 975

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             G +LG +QSG         EL+  +LE A  + K
Sbjct: 976  AGNLLGDEQSGH--VKEVGYELYQQMLEEAVAEMK 1008


>gi|332703850|ref|ZP_08423938.1| transcription-repair coupling factor [Desulfovibrio africanus str.
            Walvis Bay]
 gi|332553999|gb|EGJ51043.1| transcription-repair coupling factor [Desulfovibrio africanus str.
            Walvis Bay]
          Length = 1158

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 138/490 (28%), Positives = 230/490 (46%), Gaps = 25/490 (5%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W           E +A ++  +   +  K   G       ++  +      F  T  Q  
Sbjct: 559  WKHTTERAKKAIEKIAQELVEMYAYR--KVAKGYAYGPINELYPEFEATFGFEETPDQAR 616

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+D+++DM +   M R++ GDVG GKT VA+ A   AV  G Q  ++ P  +LA+QHY 
Sbjct: 617  AIRDVIEDMERAEPMDRLVCGDVGFGKTEVAMRAAFRAVLDGKQVALLCPTTVLAEQHYL 676

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K   Q   I V +++  +P+  ++  L+    GQ  I+IGTH +    +    + L+I
Sbjct: 677  NFKNRMQGFPISVAMLSRFVPKPKQKAVLQAAERGQVDILIGTHRMLSSDVSLPNIGLLI 736

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV+ + KL +       L +TATPIPRTL L+  G   +S I   P  RKP++
Sbjct: 737  LDEEQRFGVKHKEKLKELKKNVDSLTLTATPIPRTLQLSLSGIRGLSVIETPPVDRKPVE 796

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  +  + +   L   +  G + +W+  ++    E+      +    L     + I 
Sbjct: 797  TALVERD-AEMLKTILAREMERGGQIFWVHNRVHSLAEAE-----DYVRKLAPD--ARIG 848

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              HG+M +   E  +  F +G   +L+ T +IE G+D  +A+ ++++ A  FGL QL+QL
Sbjct: 849  HAHGQMPERQLEETIHKFWHGELDILVCTAIIESGLDFPNANTMVVDQAHMFGLGQLYQL 908

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR +  +    +      LS  +  RL V+ + +    GF IA EDL+ R  G IL
Sbjct: 909  RGRVGRSDRQAYAYFVVPSLDSLSDLAKKRLQVILDMDFLGAGFHIAMEDLRLRGAGNIL 968

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAK-----HILTQDPDLTSVRGQSIRILLYLYQ 689
            G  QSG         +L+  +LE   +  K      ++  + +         + +L    
Sbjct: 969  GEAQSGQI--ARVGLDLYLEMLEEEVQRLKGEVRHELVEPEINFVFPAHIPEKFIL---D 1023

Query: 690  YNEAFQFIRA 699
              E  ++ RA
Sbjct: 1024 PGERLRYYRA 1033


>gi|317485406|ref|ZP_07944285.1| transcription-repair coupling factor [Bilophila wadsworthia 3_1_6]
 gi|316923365|gb|EFV44572.1| transcription-repair coupling factor [Bilophila wadsworthia 3_1_6]
          Length = 1149

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 138/450 (30%), Positives = 227/450 (50%), Gaps = 18/450 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            +   + R A +++    I +   RK  K     P+   G++ ++   +  F  T  Q  
Sbjct: 558 QSGKEKARKAIEKIAEDLIEMYAWRKVAKGFRYPPL---GELYREFEASFGFEETPDQAK 614

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+D+L DM +   M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QHY+
Sbjct: 615 AIQDVLADMEKPEPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQHYQ 674

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +       + V +++  +  A +++ L+  A GQ  I+IGTH L  D +    L L+I
Sbjct: 675 TFRSRLSGFALNVGLLSRFVSSAKQKEVLKAAASGQIDILIGTHRLLSDDVVLPNLGLLI 734

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+ + KL +       L +TATPIPRTL L+  G  ++S I   P  RKP+ 
Sbjct: 735 LDEEQRFGVRHKEKLKKIKKNVDALTLTATPIPRTLQLSMSGVRELSVIETAPPERKPVS 794

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T ++  ++   + + ++  L+   + +W+  +++  +      VVE    L  +  + I 
Sbjct: 795 TALLERDK-ATLRQVIERELAREGQVFWVHNRVQGLE-----RVVEFVKELAPN--ARIG 846

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG++ +   E  M +F +G   +L+ T ++E G+D   A+ +I++ A  FGL QL+QL
Sbjct: 847 MAHGQLPEKKLEETMHAFWHGELDILVCTAIVESGLDFPRANTLIVDQAHLFGLGQLYQL 906

Query: 580 RGRVGRGEEISSCILLYH-----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGR +  +    +       P  +K     +  +     GF +A EDL+ R  G IL
Sbjct: 907 RGRVGRSDRQAFACFVVSDLERLPAATKERLRIILDMDYLGAGFQVAMEDLRLRGAGNIL 966

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G  QSG         EL+  +LE A    K
Sbjct: 967 GEVQSGHMG--RVGLELYLEMLEQAVNKIK 994


>gi|296116131|ref|ZP_06834749.1| transcription-repair coupling factor [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977237|gb|EFG83997.1| transcription-repair coupling factor [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 1157

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 138/453 (30%), Positives = 221/453 (48%), Gaps = 17/453 (3%)

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
             W S   +       +AG++      +  ++     +     +  +     PF  T+ Q
Sbjct: 554 VSWQSRKAKMKQRIRDMAGELIRTAAARALREAP--ALTPAEGLWDEFCARFPFVETEDQ 611

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI D+L DM+    M R++ GDVG GKT VAL A   A  +GGQ  ++ P  +LA+QH
Sbjct: 612 SRAIADVLDDMASGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGGQVAVVVPTTLLARQH 671

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y        +  I V  ++  +         + +  G  +I+IGTHAL   ++++  L L
Sbjct: 672 YRTFAARFADLPIKVAQLSRMVTGKDATAVRKGLEDGTVNIVIGTHALLAKTVKFADLGL 731

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDE+  FGV  + KL       HVL ++ATP+PRTL L   G  ++S I   P  R  
Sbjct: 732 LIVDEEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLALTGVREMSLIATPPTDRLA 791

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           ++T I+P + +  + E ++     G + + + P+IE+      R              + 
Sbjct: 792 VRTFIMPFDSV-VIREAIQRERFRGGQVFCVVPRIEDLDRMATRLH-------EIVPDAR 843

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +   HGR++  + E VM  F +G   +L++T ++E G+D+   + +II  A+ FGL QL+
Sbjct: 844 MVQAHGRLTPTELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLGQLY 903

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGRVGRG++     L +     LS  +  RL V++  +    GF +A  DL  R  G 
Sbjct: 904 QLRGRVGRGKQRGYAYLTWPQTHILSAAAQKRLEVMQTLDTLGAGFTLASHDLDLRGAGN 963

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           +LG +QSG         EL+  +LE A  D +H
Sbjct: 964 LLGDEQSGHI--REVGIELYQQMLEDAVADLRH 994


>gi|184201352|ref|YP_001855559.1| transcription-repair coupling factor [Kocuria rhizophila DC2201]
 gi|183581582|dbj|BAG30053.1| transcription-repair coupling factor [Kocuria rhizophila DC2201]
          Length = 1254

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 132/483 (27%), Positives = 227/483 (46%), Gaps = 17/483 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    R      + +A ++  L          G     +    +++ +  P+  T  Q 
Sbjct: 642  DWNKTKRSAKKAVKEIANELIRLY--SARMASKGHSFGPDTPWQRELEQAFPYIETPDQL 699

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 700  TTIDEVKADMERPIPMDRLISGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHS 759

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +      + +  ++        +  +E +  G   ++IGTH L    +Q+  L LV
Sbjct: 760  ETFAERFSGFPVRLATLSRFQTAKESKATMEGLRSGAVDVVIGTHRLLSKEMQFKNLGLV 819

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + KL    T   VL M+ATPIPRTL ++  G  + S +   P  R P+
Sbjct: 820  IIDEEQRFGVEHKEKLKAMRTDVDVLAMSATPIPRTLEMSMTGIRETSTLATPPEERHPV 879

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     +V   ++  L    + ++I  ++   +        +    L     + I
Sbjct: 880  LTYVGPYTN-KQVSAAIRRELMREGQVFFIHNRVSTIEA-----QAKELAELVPE--ARI 931

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++   E ++  F      +L+ TT++E G+D+ +A+ +I+++A+ +GL+QLHQ
Sbjct: 932  AVAHGQMTESRLEQIIVDFWEKKFDVLVCTTIVETGLDIANANTLIVDHADRYGLSQLHQ 991

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY    PLS+ +  RL  +        G  +A +DL+ R  G +
Sbjct: 992  LRGRVGRGRERAYAYFLYPAEKPLSETALERLKAVAAHNELGSGMQLAMKDLEIRGAGNL 1051

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +QSG         +++  L+  A  + +      P    +       L + Y   E 
Sbjct: 1052 LGGEQSGHI--AGVGFDMYLRLVGEAVAEYRGDQDTGPAEMKIELPVNAHLPHDYVPGER 1109

Query: 694  FQF 696
             + 
Sbjct: 1110 LRL 1112


>gi|302383042|ref|YP_003818865.1| transcription-repair coupling factor [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193670|gb|ADL01242.1| transcription-repair coupling factor [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 1150

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 137/451 (30%), Positives = 226/451 (50%), Gaps = 17/451 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +  A    +A  +  L  ++  +      I     +  +     P+  T  Q +
Sbjct: 553 WQGRKAKAKARLRDMAEGLIALAAKRALRVGE--AITPPHGLFDEFCARFPYDETDDQLN 610

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI D+L+D+ +   M R++ GDVG GKT VA+ A       G Q  I+ P  +LA+QH++
Sbjct: 611 AIGDVLEDLGKGVPMDRLICGDVGFGKTEVAIRAAFVVAMTGQQVAIVCPTTLLARQHFK 670

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +      I V  ++  +      +    +  G   I++GTHA+  + + +  L LVI
Sbjct: 671 TFSERFAGWPIKVRHLSRMVTARDAAETRAGLKDGSFEIVVGTHAVLSEQVGFKDLGLVI 730

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+  FGV+ + KL       H+L +TATPIPRTL +   G  ++S I   P  R  ++
Sbjct: 731 VDEEQHFGVKHKEKLKSLRADVHLLTLTATPIPRTLQMALSGIREMSIIATPPVDRLAVR 790

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T + P + +  V E L      G +A+++CP++ +  +      V+              
Sbjct: 791 TYVAPWDAV-MVREALLREKYRGGQAFYVCPRLSDLPDIEEFLRVQV-------PEIKFV 842

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+MS    E VM +F +G+  +L++TT++E GID+  A+ +I+  A+ FGLAQLHQ+
Sbjct: 843 VGHGQMSPTQLEDVMSAFYDGSYDVLVSTTIVESGIDIPTANTLIVHKADMFGLAQLHQI 902

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGR+GR +  +   L   P  PL+ ++  RL VL++ ++   GF +A  DL QR  G +L
Sbjct: 903 RGRIGRSKARAFAYLTVDPKRPLTLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNLL 962

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           G +QSG         EL+  +LE A  + + 
Sbjct: 963 GDEQSGHI--REVGVELYQQMLEDAVAELRQ 991


>gi|19703371|ref|NP_602933.1| transcription-repair coupling factor [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|19713435|gb|AAL94232.1| Transcription-repair coupling factor [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 981

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 141/441 (31%), Positives = 245/441 (55%), Gaps = 12/441 (2%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             ++    +++      ++ ++ +     G   + +  + ++     PF+ T +Q  AI+
Sbjct: 405 KRKKAKLSEDIEIFAKEIIKIQAKRNLGNGFKFSKDTVMQEEFEETFPFTETPAQSKAIE 464

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           D+ +DM     M R++ GDVG GKT VA+ A   AV  G Q +++ P  +LA+QHYE   
Sbjct: 465 DVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDGKQVILLVPTTVLAEQHYERFS 524

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D I++  + L+I+DE
Sbjct: 525 ERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDDIKFKDVGLLIIDE 584

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I   P GR+ I T  
Sbjct: 585 EQKFGVKAKEKLKKIKGDIDVLTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIHTEY 644

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
           I  N+ + + E +   +S   + ++I   ++  +     S V+    L   +   ++ IH
Sbjct: 645 IDNNK-NFIKEIILSEISREGQVFYIFNSVKRME-----SKVKEIRELLPEYI-KVSYIH 697

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +IIE  E  GL+Q++QLRGR
Sbjct: 698 GQMLPRDIKKNIQDFENGNVDVLVATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGR 757

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDLKQRKEGEILGIKQSG 640
           +GR  + S C +L +   +KN+  R   ++  ++  G  +A ED K R  GEILG KQ G
Sbjct: 758 IGRSTKKSYCYMLTNENKTKNAKKREESIREFDNLTGIDLAMEDSKIRGVGEILGEKQHG 817

Query: 641 MPK---FLIAQPELHDSLLEI 658
             +   + +    L++ +L++
Sbjct: 818 AVETFGYNLYMKMLNEEILKL 838


>gi|203288058|ref|YP_002223073.1| transcription-repair coupling factor [Borrelia recurrentis A1]
 gi|201085278|gb|ACH94852.1| transcription-repair coupling factor [Borrelia recurrentis A1]
          Length = 1125

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 139/439 (31%), Positives = 226/439 (51%), Gaps = 19/439 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A Q+  L   ++       P   + +         P+  T  Q +
Sbjct: 536 WEKKKVYATKKIDKIADQLVSLYAERENITGFQYP--QDDEWQLLFESEFPYDETPDQLT 593

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI +I QDM     M R+L GDVG GKT VA+ A   AV    Q  I++P  IL +QH+ 
Sbjct: 594 AISEIKQDMMSSKVMDRLLCGDVGFGKTEVAMRAAFKAVMGKKQVAILSPTTILTEQHFN 653

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I + +I+  + ++  ++ L  +  G   IIIGTH +    I Y  L L+I
Sbjct: 654 TFKKRFKNFPIQIAMISRFITKSKEKEILRNLETGNIDIIIGTHKILSKKITYKDLGLII 713

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L+++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 714 IDEEQRFGVKEKEKLKEIKVSVDSLVLSATPIPRSLHMSLIKLRDISVLKTPPQNRIKIE 773

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           T +   +   I   IE     LS   + +++   I+E    + ++++E+         + 
Sbjct: 774 TYVEEFSEILIKHAIEN---ELSRDGQVFFVHHNIQELD--SIKAMIEKV-----VPYAR 823

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA IH +++    E++M  F N + ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 824 IATIHAKLTGEQIENIMQDFINKSYQVLLATTIIENGIDIENANTIIINNANRFGLAQLY 883

Query: 578 QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR  + +    LY  +  L++ +  RL  +    +   GF IA +D++ R  G 
Sbjct: 884 QLRGRVGRSSKKAFAYFLYKENSNLNEGAIERLRAISEFSELGAGFQIAMKDMEIRGVGN 943

Query: 633 ILGIKQSGMPKFLIAQPEL 651
           +LG +Q G  + +     L
Sbjct: 944 LLGREQHGEIESIGLDYYL 962


>gi|182677886|ref|YP_001832032.1| transcription-repair coupling factor [Beijerinckia indica subsp.
            indica ATCC 9039]
 gi|182633769|gb|ACB94543.1| transcription-repair coupling factor [Beijerinckia indica subsp.
            indica ATCC 9039]
          Length = 1173

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 139/462 (30%), Positives = 225/462 (48%), Gaps = 21/462 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       ++R A       ++A  L++     +      +     +  +     P+  T
Sbjct: 567  DRLGGGAWQKRKARMRRHILEMASGLIKVAAARETREAPKLVPPEGLYAEFCSGFPYEET 626

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q++ I  +L+D+S    M R++ GDVG GKT VAL A       G Q  ++ P  +LA
Sbjct: 627  EDQQATIDSVLEDLSSGKPMDRLVCGDVGFGKTEVALRAAFDTAINGKQVAVIVPTTLLA 686

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QHY+       +  + V  ++  +  A  + A   I+ G   II+GTHA+    I +  
Sbjct: 687  RQHYKNFSARFAHLPVTVAQMSRMVSAADLKAAKAGISSGNVDIIVGTHAVLGKGITFKD 746

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L LVI+DE+  FGV+ + +L +     HVL ++ATPIPRTL L   G  D+S I   P  
Sbjct: 747  LGLVIIDEEQHFGVKHKERLKELRAEVHVLTLSATPIPRTLQLAMTGVRDLSIIATPPVD 806

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  V E L      G +++++ P+IE+ +        +    L  H 
Sbjct: 807  RLAVRTFISPFDDL-LVREALLRERYRGGQSFYVAPRIEDLE--------DVATYLRTHV 857

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  + HG+M+  + E  M +F  G   +L++T ++E G+D+  A+ +I+  A+ FGL
Sbjct: 858  PEVKFVVAHGQMAATELEDKMAAFYEGKYDVLLSTAIVESGLDIPTANTLIVHRADMFGL 917

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            A L+QLRGRVGR  +I +  L   PP   L+  +  RL VL + +    GF +A  DL  
Sbjct: 918  AALYQLRGRVGRS-KIRAYALFTVPPNKTLTPQAERRLKVLSSLDTLGAGFQLASHDLDI 976

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            R  G +LG  QSG         EL+  +L+ A +  K  +  
Sbjct: 977  RGAGNLLGDAQSGHI--KEVGYELYQQMLQEAVEALKSGIEA 1016


>gi|154248182|ref|YP_001419140.1| transcription-repair coupling factor [Xanthobacter autotrophicus Py2]
 gi|154162267|gb|ABS69483.1| transcription-repair coupling factor [Xanthobacter autotrophicus Py2]
          Length = 1168

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 144/464 (31%), Positives = 231/464 (49%), Gaps = 19/464 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    ++A  L++   Q +      +     +  +     P+  T
Sbjct: 562  DKLGGGAWQARKARMKKRIREMASELIKIAAQRQLGEAPKLVPAMGLYDEFRARFPYEET 621

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q++AI  +L D++  + M R++ GDVG GKT VAL A  A   +G Q  ++ P  +LA
Sbjct: 622  DDQDAAIDAVLDDLASGHPMDRLICGDVGFGKTEVALRAAFAVALSGKQVAVVVPTTLLA 681

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++   +  +   + V   +  +         + IA G   I++GTHAL   +I +  
Sbjct: 682  RQHFKTFSERFKGLPVNVAQASRMVTGKDLTAVKKGIADGTVDIVVGTHALLGKAISFKD 741

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L LVIVDE+  FGV  + +L Q     HVL +TATPIPRTL L   G  ++S I   P  
Sbjct: 742  LGLVIVDEEQHFGVSHKERLKQLRAEVHVLTLTATPIPRTLQLAMTGVRELSIIATPPVD 801

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  V E L      G +++++ P+IE+          E    L    
Sbjct: 802  RLAVRTFITPFDPL-VVREALLRERYRGGQSFYVVPRIEDLA--------EVREFLAASV 852

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+++    E +M +F +G   +L++TT++E G+DV +A+ +I+  A+ FGL
Sbjct: 853  PEVKVAVAHGQLAAGALEDIMTAFYDGQYDVLLSTTIVESGLDVPNANTLIVHRADMFGL 912

Query: 574  AQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            AQL+QLRGRVGR +  +  I       P++  +  RL VL++ E    GF +A  DL  R
Sbjct: 913  AQLYQLRGRVGRAKARAYAIFTVPATKPMTVQAERRLKVLQSLETLGAGFQLASHDLDIR 972

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
              G +LG +QSG         EL+  +L+ A    K  +T   D
Sbjct: 973  GAGNLLGDEQSGHI--KEVGYELYQEMLQEAIAHLKAGITDYVD 1014


>gi|254475764|ref|ZP_05089150.1| transcription-repair coupling factor [Ruegeria sp. R11]
 gi|214030007|gb|EEB70842.1| transcription-repair coupling factor [Ruegeria sp. R11]
          Length = 1153

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 136/451 (30%), Positives = 230/451 (50%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        ++      ++     P+  T
Sbjct: 538 DRLGGGAWQAKKAKLKERIREMADRLIRVAAERALRKAPMMDPPPHAWEEFSARFPYQET 597

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI +++ D++    M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA
Sbjct: 598 DDQLRAIGEVMADLNSGMPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVVAPTTLLA 657

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH     +  +   + V  ++  +      K  E +A+G   I++GTHAL   ++++  
Sbjct: 658 RQHAAGFAQRFRGFPLEVRQLSRFVTAKEAAKTREGLANGTVDIVVGTHALLAKTVKFQN 717

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 718 LGLLIIDEEQHFGVAHKERLKQMRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVD 777

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P+I +  E            L E  
Sbjct: 778 RLAIRTYVSEFDAV-TIREALLREHYRGGQSFYVVPRITDLPEIE--------AFLQEQL 828

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S  + HG+++  D +  M++F +G   +L+ATT++E G+D+  A+ +++  A+ FGL
Sbjct: 829 PELSYVVAHGQLAAGDLDERMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFGL 888

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           AQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R
Sbjct: 889 AQLYQIRGRVGRSKTRAYAYLTTKPRVRLTPGAEKRLRVLGSLDTLGAGFSLASQDLDIR 948

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG  +      EL+ S+LE A
Sbjct: 949 GAGNLLGEEQSGQMRD--VGYELYQSMLEEA 977


>gi|29840634|ref|NP_829740.1| transcription-repair coupling factor [Chlamydophila caviae GPIC]
 gi|29834984|gb|AAP05618.1| transcription-repair coupling factor [Chlamydophila caviae GPIC]
          Length = 1085

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 139/443 (31%), Positives = 211/443 (47%), Gaps = 14/443 (3%)

Query: 213 RKAKDFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
               +   +   R R L+   L+     LL +  Q            G+   K   N P+
Sbjct: 498 PDLHNLNGSKWRRSRDLSEKSLVLYAEKLLQLEAQRSTIPSFIYPPHGEEVIKFAENFPY 557

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPI 330
             T  Q  AI+ I  DM     M R++ GD G GKT V + A   AV  G  Q ++M P 
Sbjct: 558 EETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAVCDGHRQVIVMVPT 617

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QHYE   +      I + +++    +   +K  E  A G   I+IGTH L   ++
Sbjct: 618 TILANQHYETFSQRMAGLPINIAVLSRFSERKSMKKIFEDTAKGDIDILIGTHKLINKNL 677

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++    L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL ++  G  D+S IT 
Sbjct: 678 EFKNPGLLIIDEEQRFGVKVKDFLKERYPKVDCLTVSATPIPRTLYMSLSGARDLSLITM 737

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T ++  N  + +   L+  L  G +AY I  +IE         +     +L
Sbjct: 738 PPLDRLPVSTFVLEHNE-ETLSAALRHELLRGGQAYVIHNRIESIF-----RLGNTIRTL 791

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + IA+ HG+MS  +  S+   FK+    +L+AT +IE GID+ +A+ I+++ A+ 
Sbjct: 792 IPE--ARIAVAHGQMSPDELASIFQKFKDQEINILVATALIENGIDIPNANTILVDQADK 849

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL--KNTEDGFLIAEEDLK 626
           FG+A L+Q++GRVGR    + C  L      LS  +  RL  L  +    G  IA  DL+
Sbjct: 850 FGMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLEALNKQEYGGGMKIALHDLE 909

Query: 627 QRKEGEILGIKQSGMPKFLIAQP 649
            R  G ILG  QSG    +    
Sbjct: 910 IRGAGNILGTDQSGHISAIGFNL 932


>gi|146329097|ref|YP_001209598.1| transcription-repair coupling factor [Dichelobacter nodosus
           VCS1703A]
 gi|146232567|gb|ABQ13545.1| transcription-repair coupling factor [Dichelobacter nodosus
           VCS1703A]
          Length = 1117

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 151/446 (33%), Positives = 226/446 (50%), Gaps = 19/446 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++        A ++  L +    +      +  +  +     +   +  T  Q++
Sbjct: 516 WQNAKKKAQQTARDTAAEL--LAIYAAREAASAQALTFDPHMLADFAQQFEYETTPDQQA 573

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L D+ Q   M RI+ GDVG GKT VA+ A  AAV AG Q  I+ P  +LA QH  
Sbjct: 574 AIDAVLNDLQQAKPMDRIVCGDVGFGKTEVAMRAAYAAVLAGYQCAIITPTTLLADQHVH 633

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  +  + +  I+     A +R  ++ +  G   I+IGTH L Q  I + +L LVI
Sbjct: 634 NFLDRFSHIAVRIAAISRFKTPAEQRAIVQSLRDGTIDIVIGTHRLLQKDIAFARLGLVI 693

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ +  L       ++L +TATPIPRTL L   G  D+S I   PAGR+ I+
Sbjct: 694 VDEEHRFGVKHKEALKSLRADVNLLTLTATPIPRTLNLALSGLRDLSIIATAPAGRQSIQ 753

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSI 518
           T+I   + I  + E  +  L+ G + Y++   +                +L E    + I
Sbjct: 754 TIISQYDPI-VIEEACERELNRGGQIYFLHNDVSSIDRI--------ARALSEQLPQARI 804

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+ HG++ +   E +M  F N    LL+A+T+IE GID+ +A+ III  A+  GLAQLHQ
Sbjct: 805 AVAHGQLRERALEKIMQDFYNRHYDLLVASTIIESGIDIPNANTIIINRADKLGLAQLHQ 864

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGR    +   L+      L+K++  RLS     +    GFL+A +DL+ R  GEI
Sbjct: 865 LRGRVGRSHHQAYAYLITPAWQTLNKDAQRRLSAFTELDSLGAGFLLASQDLEIRGAGEI 924

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIA 659
           LG +QSG  + +     L   LLE A
Sbjct: 925 LGDEQSGQIQQIGMSYYLD--LLERA 948


>gi|288917959|ref|ZP_06412318.1| transcription-repair coupling factor [Frankia sp. EUN1f]
 gi|288350614|gb|EFC84832.1| transcription-repair coupling factor [Frankia sp. EUN1f]
          Length = 1189

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 150/490 (30%), Positives = 243/490 (49%), Gaps = 27/490 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +AG++  L          G     +    +++    PF  T  Q 
Sbjct: 585  DWAKRKTRARKAVKEIAGELIRLY--SARMAAPGHAFGPDTPWQRELEDAFPFRETPDQL 642

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI ++  DM +   M R++ GDVG GKT +A+ A   AV  G Q  ++ P  +L QQHY
Sbjct: 643  SAIDEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVGDGKQVAVLVPTTLLVQQHY 702

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      ++V+ ++     A +R  L+ +A+G   ++IGTH LF    ++  L LV
Sbjct: 703  QTFAERYAPFPVVVKAMSRFNSAAEQRAVLDGLANGTVDVVIGTHRLFSSETKFSDLGLV 762

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +  TA  VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 763  IVDEEQRFGVEHKEHLKKMRTAVDVLTMSATPIPRTLEMSITGIRELSTIDTPPEERHPV 822

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   ++  L    + ++I  ++E            R   L     + +
Sbjct: 823  LTSVAAHD-PSQVGAAIRRELLREGQVFYIHNRVESID-----RAAARLRELVPE--ARV 874

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++   E VM SF      +L+ TT++E G+D+ +A+ +I+E A++FGL+QLHQ
Sbjct: 875  ATAHGQMNEDTLEGVMVSFWEKKFDVLVCTTIVESGLDISNANTLIVERADNFGLSQLHQ 934

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  PLS+ ++ RL+ +    D   G  +A +DL+ R  G +
Sbjct: 935  LRGRVGRGRERAYAYFLYPPDRPLSETAHDRLATIAQHNDLGAGMAVAMKDLEIRGAGNL 994

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ----------DPDLTSVRGQSIRI 683
            LG +QSG         +L+  ++  A  + K  + +          D +L      S R+
Sbjct: 995  LGGEQSGHI--ASVGFDLYVRMVGEAVAEYKGEVEEPIEVKVELPVDANLPHDYVPSERL 1052

Query: 684  LLYLYQYNEA 693
             L  Y+   A
Sbjct: 1053 RLDAYRRLAA 1062


>gi|305681933|ref|ZP_07404737.1| transcription-repair coupling factor [Corynebacterium matruchotii
            ATCC 14266]
 gi|305658406|gb|EFM47909.1| transcription-repair coupling factor [Corynebacterium matruchotii
            ATCC 14266]
          Length = 1238

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 131/439 (29%), Positives = 221/439 (50%), Gaps = 17/439 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +A ++  L  ++      G     +    Q++  N PF  T+ Q 
Sbjct: 600  DWKNTKKKARAAVREIASELVELYAKRATA--PGHAFAPDSPWQQELEDNFPFVETEDQM 657

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  + QDM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 658  AAIAAVKQDMEQPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHL 717

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + ++ ++     +  ++ L  +  G   I+IGTH L Q  +Q+ +L LV
Sbjct: 718  ATFAERMAGFPVTIKGLSRFTSASDAKEILSGLRDGSVDIVIGTHRLLQTGVQWKQLGLV 777

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +    +   VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 778  VVDEEQRFGVEHKEHIKAMRSHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPI 837

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T +       ++   ++  L    + +++  ++ + +        ++   L      + 
Sbjct: 838  LTYVGAQEE-KQIAAAIRRELLRDGQVFFVHNKVSDIE--------KKARELRNLVPEAR 888

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLH
Sbjct: 889  IVVAHGQMSEEVLERTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLH 948

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR         LY     L++ SY RL+ +    D   G  +A +DL+ R  G 
Sbjct: 949  QLRGRVGRSRSRGYAYFLYPKGTTLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGN 1008

Query: 633  ILGIKQSGMPKFLIAQPEL 651
            +LG +QSG    +     +
Sbjct: 1009 VLGAQQSGHIAGVGFDLYV 1027


>gi|289178790|gb|ADC86036.1| Transcription-repair coupling factor [Bifidobacterium animalis subsp.
            lactis BB-12]
          Length = 1248

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 133/470 (28%), Positives = 232/470 (49%), Gaps = 22/470 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 647  DWAQTKAKAKKHVHEIAQNLIRLYSARQRA--KGFAFSKDTPWQKELEDAFPYQETADQL 704

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+  DM +   M R++ GDVG GKT +A+ A   AV+   Q  ++ P  +L QQH 
Sbjct: 705  TTIDDVKADMEKPIPMDRLICGDVGFGKTEIAIRAAFKAVQDSKQVAVLVPTTLLVQQHL 764

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +  +   + V  ++         + ++ +A G   ++IGTH L    I++  L LV
Sbjct: 765  QTFTERFEGFPVNVRAMSRFQSTKEINETIKGLADGTVDVVIGTHKLLNPKIKFKDLGLV 824

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 825  IIDEEQRFGVEAKETLKAVRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 884

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + ++I  ++E  +E       +R   L     + I
Sbjct: 885  LTYVGAYED-AQVTAAIRRELLRGGQVFYIHNRVEGIEE-----KAKRLQDLVPE--ARI 936

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M     + ++  F +    +L+ TT++E G+D+ +A+ +I++ A+ FGL+QLHQ
Sbjct: 937  GIAHGKMGRKQLDQIIRDFWHRDIDVLLCTTIVETGLDISNANTLIVDRADRFGLSQLHQ 996

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG + +    LY P  P+++ S+ RL  +        GF +A +DL+ R  G +
Sbjct: 997  LRGRVGRGRDRAYAYFLYDPSKPMTEQSHERLVTIAQNTALGSGFDVAMKDLELRGTGNL 1056

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            LG +QSG  +      +L+  ++  A +D K     DP+ T     +I +
Sbjct: 1057 LGDEQSGHIE--GVGFDLYVRMVSEAIEDYK-----DPERTEPVAVTIDL 1099


>gi|304383034|ref|ZP_07365510.1| transcription-repair coupling factor [Prevotella marshii DSM 16973]
 gi|304335817|gb|EFM02071.1| transcription-repair coupling factor [Prevotella marshii DSM 16973]
          Length = 1143

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 131/451 (29%), Positives = 221/451 (49%), Gaps = 19/451 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L  ++  +   G   + +  +  ++  +  +  T  Q  
Sbjct: 530 WNRLKERAKKRIKDIARDLIQLYAKR--RHIKGHAFSPDSSLQHELEASFLYEDTPDQLK 587

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             +++  DM  +  M R++ GDVG GKT +A+ A   A   G Q  ++ P  +LA QHY 
Sbjct: 588 TTQEVKADMESERPMDRLVCGDVGFGKTEIAVRAAFKAAFDGKQTAVLVPTTVLAFQHYR 647

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +   + V+ ++     +  +  LE +A G+  I++GTH L   ++ +  L L++
Sbjct: 648 TFSERLKLFPVRVDYLSRARTASQMKSILEDLAAGKIDILVGTHKLVSKNVVWKDLGLLV 707

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL         L M+ATPIPRTL  + +G  D+S +   P  R P+ 
Sbjct: 708 IDEEQKFGVSTKEKLRALKANVDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPVC 767

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T I   N  D + + ++  +S   + Y +   I + +           +S+ +H     +
Sbjct: 768 TEIATFND-DAMYDAIEFEMSRNGQTYVVNNNIAQLQNI--------ADSIVQHIPDCRV 818

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I HG+MS    E+V+  F N    +L++TT+IE GID+ +A+ III  A+HFGL+ LHQ
Sbjct: 819 VIGHGQMSPSRLEAVIMGFMNHDYDVLLSTTIIENGIDIPNANTIIIRGAQHFGLSDLHQ 878

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           +RGRVGR    + C L+  P   ++  +  RL  L+       GF IA +DL  R  G +
Sbjct: 879 MRGRVGRSNRKAFCYLIAPPLVTVNNEARRRLEALEMFSGLGSGFNIAMQDLDIRGAGNL 938

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG +QSG  + L    E +  +L  A  + K
Sbjct: 939 LGSEQSGFIEDL--GYETYQKVLSEAVTELK 967


>gi|216263646|ref|ZP_03435641.1| transcription-repair coupling factor [Borrelia afzelii ACA-1]
 gi|215980490|gb|EEC21311.1| transcription-repair coupling factor [Borrelia afzelii ACA-1]
          Length = 1124

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 144/439 (32%), Positives = 230/439 (52%), Gaps = 19/439 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + ++        P+  T  Q +
Sbjct: 532 WIKNKVNAKKRIEEIAEKLIELYSKRESIKGIKYP--KDNELQLLFESEFPYDETPDQIT 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q V+++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVVVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +     ++ L+ +  G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNSEKRILKELKSGEIDIIIGTHKILSKKFSCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPKNRVKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE      ++++E+         + 
Sbjct: 770 AYLESFSELLIKHAIEN---ELSRDGQVFLVNHNIEEL--HYLKTLIEKLT-----PYAR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++ I+ E++M  F     ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGIEIENIMHDFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    D   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSDLGSGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQPEL 651
           +LG +Q G  + +     L
Sbjct: 940 LLGREQHGEIESIGLDYYL 958


>gi|225022992|ref|ZP_03712184.1| hypothetical protein CORMATOL_03039 [Corynebacterium matruchotii ATCC
            33806]
 gi|224944215|gb|EEG25424.1| hypothetical protein CORMATOL_03039 [Corynebacterium matruchotii ATCC
            33806]
          Length = 1223

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 131/439 (29%), Positives = 220/439 (50%), Gaps = 17/439 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  ++  A    +A ++  L  ++      G     +    Q++  N PF  T+ Q 
Sbjct: 585  DWKNTKKKARAAVREIASELVELYAKRATA--PGHAFAPDSPWQQELEDNFPFVETEDQM 642

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI  + QDM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 643  AAIAAVKQDMEQPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHL 702

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + +  ++     +  ++ L  +  G   I+IGTH L Q  +Q+ +L LV
Sbjct: 703  ATFAERMAGFPVTIRGLSRFTSASDAKEILSGLRDGSVDIVIGTHRLLQTGVQWKQLGLV 762

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +    +   VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 763  VVDEEQRFGVEHKEHIKAMRSHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPI 822

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T +       ++   ++  L    + +++  ++ + +        ++   L      + 
Sbjct: 823  LTYVGAQEE-KQIAAAIRRELLRDGQVFFVHNKVSDIE--------KKARELRNLVPEAR 873

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            I + HG+MS+   E  +  F +    +L+ TT++E G+D+ +A+ +I+ENA H GL+QLH
Sbjct: 874  IVVAHGQMSEEVLERTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLH 933

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGR         LY     L++ SY RL+ +    D   G  +A +DL+ R  G 
Sbjct: 934  QLRGRVGRSRSRGYAYFLYPKGTTLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGN 993

Query: 633  ILGIKQSGMPKFLIAQPEL 651
            +LG +QSG    +     +
Sbjct: 994  VLGAQQSGHIAGVGFDLYV 1012


>gi|212550582|ref|YP_002308899.1| transcription-repair coupling factor [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548820|dbj|BAG83488.1| transcription-repair coupling factor [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 1109

 Score =  326 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 134/429 (31%), Positives = 212/429 (49%), Gaps = 15/429 (3%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           + +  + ++E G   + +  + +++  +  +  T  Q     +I +DM     M R++ G
Sbjct: 522 IQLYSKRREEKGFAFSSDTYLQKELEASFFYENTPDQAKVNMEIKKDMENIRPMDRLVCG 581

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           DVG GKT +A+ A   AV    Q  ++ P  +LA QHY   K+   N  + +  I+    
Sbjct: 582 DVGFGKTELAIRAAFKAVTDSKQVAVLVPTTLLAFQHYNTFKERLSNFPVTINYISRART 641

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
               +  ++++  G   I+IGTH +    +Q+  L L+I+DE+ +FGV+ + KL Q  T 
Sbjct: 642 TKDSKTIIKKLKEGTIDILIGTHRIVSKDVQFKDLGLLIIDEEQKFGVEVKEKLKQMKTN 701

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              L +TATPIPRTL  + +G  DIS I+  P  R PI T +    + + + E +   +S
Sbjct: 702 IDSLTLTATPIPRTLQFSLMGARDISNISTPPPNRYPIHTELHRFEK-NIIREAINFEMS 760

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
              + + I  +I    +       E            IAI HG+M     E ++  F N 
Sbjct: 761 RNGQIFIINNRISNLGDLKDLVKKE-------IPDGRIAIGHGQMESTKLEQIITDFVNY 813

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-- 598
              +LI+T++IE GID+ +A+ III NA++FGL+ LHQLRGRVGRG   + C LL  P  
Sbjct: 814 EYDILISTSIIENGIDIPNANTIIINNAQNFGLSDLHQLRGRVGRGNRKAFCYLLCPPLS 873

Query: 599 ---PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
              P +      +        G  IA +DL  R  G+ILG +QSG    L    E +  +
Sbjct: 874 NLTPKTVRRLHAIEGFSELGSGIHIAMQDLDIRGAGDILGAEQSGFIADL--GYETYQKI 931

Query: 656 LEIARKDAK 664
           L  A ++ K
Sbjct: 932 LSEAIQELK 940


>gi|167763421|ref|ZP_02435548.1| hypothetical protein BACSTE_01795 [Bacteroides stercoris ATCC
           43183]
 gi|167698715|gb|EDS15294.1| hypothetical protein BACSTE_01795 [Bacteroides stercoris ATCC
           43183]
          Length = 1128

 Score =  326 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 140/451 (31%), Positives = 229/451 (50%), Gaps = 19/451 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 513 WEKLKDRTKTKIKDIARDLIKLY--SQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSK 570

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 571 ATADVKADMESARPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQ 630

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  +     VE ++     A  +  ++ +A G+ +I+IGTH +    +++  L L+I
Sbjct: 631 TFKERLKGLPCRVEYLSRARTAAQTKSVVKGLAGGEVNILIGTHRILGKDVKFKDLGLLI 690

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L +TATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 691 IDEEQKFGVSVKEKLRQLKVNVDTLTLTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 750

Query: 460 TVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           T +      DE+I + +   +S   + +++  +I    E   ++++ER           +
Sbjct: 751 TEVHTFG--DEIITDAINFEMSRNGQVFFVNNRISNLSE--LKAMIER-----NIPDCRV 801

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ
Sbjct: 802 CIGHGQMEPAELEKIILDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQ 861

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           +RGRVGR  + + C LL  P   L+  +  RL  ++N  D   G  IA +DL  R  G +
Sbjct: 862 MRGRVGRSNKKAFCYLLAPPLSSLTLEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNM 921

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG +QSG    L    E +  +L  A ++ K
Sbjct: 922 LGAEQSGFIADL--GYETYQKILSEAVRELK 950


>gi|319783816|ref|YP_004143292.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169704|gb|ADV13242.1| transcription-repair coupling factor [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
          Length = 1165

 Score =  326 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 140/458 (30%), Positives = 228/458 (49%), Gaps = 21/458 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A        +A  L+R   + +     P+     +  +     P+  T
Sbjct: 561  DKLGGGAWQSRKARLRKRLLDMAGQLIRIAAERQMRSAPPLVPAEGLYGEFAARFPYEET 620

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q++AI  +  D++    M R++ GDVG GKT VAL A   A   G Q  ++ P  +L+
Sbjct: 621  DDQQTAIDSVRDDLAAGKPMDRLICGDVGFGKTEVALRAAFIAAMEGFQVAVVVPTTLLS 680

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++   +      I V   +  +      +  + IA GQ  I+IGTHAL   +I +  
Sbjct: 681  RQHFKTFSQRFSGLPIRVAQASRLVGAKELAETKKGIAEGQVDIVIGTHALLGSAISFKN 740

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L    T  HVL ++ATPIPRTL L   G  ++S I   P  
Sbjct: 741  LGLLIIDEEQHFGVKHKERLKDLKTDVHVLTLSATPIPRTLQLALTGVRELSLIATPPVD 800

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G  ++++ P+I +          E  + L E  
Sbjct: 801  RMAVRTFISPFDPL-VIRETLLRERYRGGHSFYVVPRISDL--------SEIHDFLKESV 851

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M   + + +M++F +G   +L++TT++E G+D+  A+ +II  A+ FGL
Sbjct: 852  PELKVAVAHGQMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTLIIHRADMFGL 911

Query: 574  AQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            +QL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  
Sbjct: 912  SQLYQLRGRVGRS-KVRAYALFTLPANRKLTDTAERRLKVLQSLDTLGAGFQLASHDLDI 970

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R  G +LG +QSG         EL+  +LE A  + K 
Sbjct: 971  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEAVAEVKD 1006


>gi|254469399|ref|ZP_05082804.1| transcription-repair coupling factor [Pseudovibrio sp. JE062]
 gi|211961234|gb|EEA96429.1| transcription-repair coupling factor [Pseudovibrio sp. JE062]
          Length = 1162

 Score =  326 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 130/451 (28%), Positives = 218/451 (48%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + R A  +    +IA  L++   +        I        +      +  T
Sbjct: 558 DKLGGGAWQARKAKMKKRILEIADGLIKIAAERALRTAPAITAPEGAYDEFAARFVYDET 617

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q +AI+ +  DM+    M R++ GDVG GKT VAL A   A  +G Q  I+ P  +LA
Sbjct: 618 DDQMTAIESVFDDMASGRPMDRLVCGDVGFGKTEVALRAAFLAAMSGRQVAIVVPTTLLA 677

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY           I+V   +  +P     +  + +  G   +++GTHAL   +I +  
Sbjct: 678 RQHYRTFADRFNGLPIVVRQASRLVPGKELSETKKGLKDGSVDVVVGTHALLGKAIGFRD 737

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S I   P  
Sbjct: 738 LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLIATPPVD 797

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  +++ I P + +  + E L      G +++++CP++ +          E    L E+ 
Sbjct: 798 RLAVRSFISPFDPM-VIRESLLREHYRGGQSFYVCPRVSDLA--------EVRAFLEENV 848

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +   HG+M   + + +M++F  G   +L+ATT++E G+D+ +A+ +I+  ++ FGL
Sbjct: 849 PEVKVVSAHGQMPPGELDDIMNAFYEGKFDVLLATTIVESGLDIPNANTLIVHRSDMFGL 908

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNS-----YTRLSVLKNTEDGFLIAEEDLKQR 628
           AQL+Q+RGRVGR +  +  +       +  +        L  L+N   GF +A  DL  R
Sbjct: 909 AQLYQIRGRVGRSKTRAYALFTVPANKTLTATAERRLKVLQSLENLGAGFQLASHDLDIR 968

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG         EL+  +LE A
Sbjct: 969 GAGNLLGEEQSGHI--KEVGFELYQQMLEEA 997


>gi|203284524|ref|YP_002222264.1| transcription-repair coupling factor [Borrelia duttonii Ly]
 gi|201083967|gb|ACH93558.1| transcription-repair coupling factor [Borrelia duttonii Ly]
          Length = 1125

 Score =  326 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 139/439 (31%), Positives = 225/439 (51%), Gaps = 19/439 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A Q+  L   ++       P   + +         P+  T  Q +
Sbjct: 536 WEKKKVYATKKIDKIADQLVSLYAERENITGFQYP--QDDEWQLLFESEFPYDETPDQLT 593

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI +I QDM     M R+L GDVG GKT VA+ A   AV    Q  I++P  IL +QH+ 
Sbjct: 594 AISEIKQDMMSSKVMDRLLCGDVGFGKTEVAMRAAFKAVMGKKQVAILSPTTILTEQHFN 653

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I + +I+  + ++  ++ L  +  G   IIIGTH +    I Y  L L+I
Sbjct: 654 TFKKRFKNFPIQIAMISRFITKSKEKEILRNLETGNIDIIIGTHKILSKKITYKDLGLII 713

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 714 IDEEQRFGVKEKEKLKEIKVSVDSLALSATPIPRSLHMSLIKLRDISVLKTPPQNRIKIE 773

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           T +   +   I   IE     LS   + +++   I+E    + ++++E+         + 
Sbjct: 774 TYVEEFSEILIKHAIEN---ELSRDGQVFFVHHNIQELD--SIKAMIEKV-----VPYAR 823

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA IH +++    E++M  F N + ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 824 IATIHAKLTGEQIENIMQDFINKSYQVLLATTIIENGIDIENANTIIINNANRFGLAQLY 883

Query: 578 QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR  + +    LY  +  L++ +  RL  +    +   GF IA +D++ R  G 
Sbjct: 884 QLRGRVGRSSKKAFAYFLYKENSNLNEGAIERLRAISEFSELGAGFQIAMKDMEIRGVGN 943

Query: 633 ILGIKQSGMPKFLIAQPEL 651
           +LG +Q G  + +     L
Sbjct: 944 LLGREQHGEIESIGLDYYL 962


>gi|111115454|ref|YP_710072.1| transcription-repair coupling factor [Borrelia afzelii PKo]
 gi|110890728|gb|ABH01896.1| transcription-repair coupling factor [Borrelia afzelii PKo]
          Length = 1124

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 144/439 (32%), Positives = 230/439 (52%), Gaps = 19/439 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + ++        P+  T  Q +
Sbjct: 532 WIKNKVNAKKRIEEIAEKLIELYSKRESIKGIKYP--KDNELQLLFESEFPYDETPDQIT 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q V+++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVVVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +     ++ L+ +  G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNSEKRILKELKSGEIDIIIGTHKILSKKFSCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPKNRVKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE      ++++E+         + 
Sbjct: 770 AYLESFSELLIKHAIEN---ELSRDGQVFLVNHNIEEL--HYLKTLIEKLT-----PYAR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++ I+ E++M  F     ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGIEIENIMHDFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    D   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSDLGSGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQPEL 651
           +LG +Q G  + +     L
Sbjct: 940 LLGREQHGEIESIGLDYYL 958


>gi|222148735|ref|YP_002549692.1| transcription-repair coupling factor [Agrobacterium vitis S4]
 gi|221735721|gb|ACM36684.1| transcription-repair coupling factor [Agrobacterium vitis S4]
          Length = 1175

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 131/450 (29%), Positives = 228/450 (50%), Gaps = 15/450 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
                 R+      LL     L+ +  +        +        +     P+  T+ Q +
Sbjct: 577  GAWQMRKAKLKKRLLDMAGGLIRIAAERMMRSAPVLATTEGFYDEFAARFPYEETEDQMN 636

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ +  D++    M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QH++
Sbjct: 637  AIEAVRGDLAAGRPMDRLICGDVGFGKTEVALRAAFVAAMNGIQVAVVVPTTLLARQHFK 696

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +  +   I ++  +  +         + +A G+  I++GTHAL    I++  L L++
Sbjct: 697  TFSERFRGLPIRIQQASRLVGTKELNLVKKEVAEGKTDIVVGTHALLGSGIKFANLGLLV 756

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++
Sbjct: 757  IDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVR 816

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T I P + +  + E L      G +++++CP++ +  +       +            +A
Sbjct: 817  TFISPFDPL-VIRETLMREHYRGGQSFYVCPRLADLADIKAFLESDV-------PELKVA 868

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M+  + E +M++F  G   +L++TT++E G+DV  A+ +I+  A+ FGLAQL+Q+
Sbjct: 869  IAHGQMAAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGLAQLYQI 928

Query: 580  RGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR +  +  +L    +  L+ ++  RL VL++ +    GF +A  DL  R  G +L
Sbjct: 929  RGRVGRSKVRAFALLTLPVNKVLTTSAERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLL 988

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            G +QSG         EL+  +LE A  + K
Sbjct: 989  GEEQSGHI--KEVGFELYQQMLEEAVAEVK 1016


>gi|119025662|ref|YP_909507.1| transcription-repair coupling factor [Bifidobacterium adolescentis
            ATCC 15703]
 gi|118765246|dbj|BAF39425.1| transcription-repair coupling factor [Bifidobacterium adolescentis
            ATCC 15703]
          Length = 1188

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 229/452 (50%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 587  DWAATKAKARKHVHEIAEDLVKLYSARQR--TKGYAFSKDTPWQKELEDAFPYQETADQL 644

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+   Q  ++ P  +L QQH+
Sbjct: 645  TTIDEVKSDMEKPIPMDRLICGDVGFGKTEIAVRAAFKAVQDSKQVAVLVPTTLLVQQHF 704

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++         + ++ +  G   ++IGTH L    I++  L LV
Sbjct: 705  ETFTERFEGFPVNVAAMSRFQTAKEINETIKGLEDGSVDVVIGTHKLLNPKIKFKDLGLV 764

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 765  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 824

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  ++++       SV  + + L     S +
Sbjct: 825  LTYVGAYED-AQVTAAIRRELLRGGQVFYVHNRVQDIS-----SVAAKIHELVPE--SHV 876

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 877  GIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 936

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 937  LRGRVGRGRERAYAYFLYDPTKPMTQQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 996

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 997  LGDEQSGHIE--GVGFDLYVRMVSEAVEQYKE 1026


>gi|126737697|ref|ZP_01753427.1| transcription-repair coupling factor [Roseobacter sp. SK209-2-6]
 gi|126721090|gb|EBA17794.1| transcription-repair coupling factor [Roseobacter sp. SK209-2-6]
          Length = 1158

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 136/451 (30%), Positives = 229/451 (50%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        ++      ++     P+  T
Sbjct: 543 DRLGGGAWQAKKAKLKERIREMADRLIRIAAERALRKAPVMDPPPHAWEEFSARFPYQET 602

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + Q  AI+D+++D+     M R++ GDVG GKT VA+ A   A  +G Q  I+AP  +LA
Sbjct: 603 EDQLRAIEDVMEDLHSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVAPTTLLA 662

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH     +  +   + V  ++  +      K  E +A G   I++GTHAL   +I++  
Sbjct: 663 RQHAAGFAERFRGFPLEVRQLSRFVSAKDASKTREGLAKGTIDIVVGTHALLAKNIRFQN 722

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 723 LGLLIIDEEQHFGVAHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVD 782

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P+I +  E            L    
Sbjct: 783 RLAIRTYVSEFDAV-TIREALLREHYRGGQSFYVVPRISDLPEIE--------EFLKTQL 833

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                 +  G+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++  A+ FGL
Sbjct: 834 PELRYVVATGQMAAGELDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMVVHRADMFGL 893

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           AQL+Q+RGRVGR +  +   L   P   L++ +  RL VL + +    GF +A +DL  R
Sbjct: 894 AQLYQIRGRVGRSKTRAYAYLTTKPRQRLTQTAEKRLRVLGSLDTLGAGFTLASQDLDIR 953

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG  +      EL+ S+LE A
Sbjct: 954 GAGNLLGEEQSGQMRD--VGYELYQSMLEEA 982


>gi|258405811|ref|YP_003198553.1| transcription-repair coupling factor [Desulfohalobium retbaense DSM
            5692]
 gi|257798038|gb|ACV68975.1| transcription-repair coupling factor [Desulfohalobium retbaense DSM
            5692]
          Length = 1153

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 134/462 (29%), Positives = 226/462 (48%), Gaps = 18/462 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    +      E +A ++  +   ++     G   +   ++ ++   +  F+ T  QE 
Sbjct: 558  WQKTTKRVRKAIEQIAHELVRMYAYRRVA--KGFAYSAADELYREFEASFGFAETPDQEK 615

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             I D+L+DM     M R++ GDVG GKT +A+ A   AV    Q  ++ P  +LA+QHY+
Sbjct: 616  VISDVLEDMDSPEPMDRLVCGDVGFGKTEIAMRAAFRAVADSKQVALLCPTTVLAEQHYQ 675

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              ++  +  ++ V +++  +P+A +RK LE    G+  I+IGTH L    ++  +  L+I
Sbjct: 676  NFRQRMEPFEVRVGLLSRFVPKAQQRKTLEAAGRGEIDILIGTHRLLSQDVRLPQQSLLI 735

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV+ + KL +      VL +TATPIPRTL L+  G   +S I   P  RK ++
Sbjct: 736  LDEEQRFGVKHKEKLKEIRKTLDVLTLTATPIPRTLQLSLSGVRSLSVIETPPPERKAVE 795

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            + +I       + E L+  +  G + +++  ++    E     V +    L     + + 
Sbjct: 796  SSLIE-REPGRLQEILQREVDRGGQVFFVHNRVRGLAE-----VRDMVQHLVPE--ARVG 847

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M++   E  M  F +G   +L+ T +IE G+D   A+ +I++ A  FGL QL+QL
Sbjct: 848  MAHGQMAERRLEESMHRFWHGELDILVCTAIIESGLDFPRANTLIVDQAHMFGLGQLYQL 907

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR +  +    +      L  ++  RL  +        G  +A  DL+ R  G +L
Sbjct: 908  RGRVGRSKRQAYAYFVVPSLDNLPADARKRLQAILEADYLGAGIQVAMRDLQLRGAGNLL 967

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL--TQDPDLT 674
            G  QSG    +     L + L E  RK     L    DP+L 
Sbjct: 968  GESQSGQISKVGLDLFL-EMLEEEVRKIRGEALPPQTDPELQ 1008


>gi|332558234|ref|ZP_08412556.1| transcription-repair coupling factor [Rhodobacter sphaeroides WS8N]
 gi|332275946|gb|EGJ21261.1| transcription-repair coupling factor [Rhodobacter sphaeroides WS8N]
          Length = 1165

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 134/450 (29%), Positives = 225/450 (50%), Gaps = 19/450 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    +IA  LMR   +        +     + +      P+  T
Sbjct: 547 DKLGGGAWQAKKARLKERIREIAERLMRIAAERHLRHAPILEAPHSLWEAFSARFPYQET 606

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q SAI D+++D+   + M R++ GDVG GKT VA+ A   A  AG Q  ++ P  +LA
Sbjct: 607 DDQLSAIADVVKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAALAGMQVAVICPTTLLA 666

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH+    +  +   + V  ++  +      +    +A G   I IGTHAL    ++   
Sbjct: 667 RQHFRSFAERFRGFPMKVRQLSRFVSAKEAAETRAGLADGTVDICIGTHALLAKGVKLKN 726

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L +  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 727 LGLLIIDEEQHFGVSHKERLKEMRSEVHVLTLTATPIPRTLQLSLTGVRDLSIIATPPVD 786

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P++ +  +            L +H 
Sbjct: 787 RLAIRTYVSEFDTV-TIREALLRERYRGGQSFFVVPRLSDLPDME--------AFLRDHV 837

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S  + HG+++  + +  M++F +G   +L+ATT++E G+D+  A+ +I+  A+ FGL
Sbjct: 838 PEVSYVVAHGQLAAGELDERMNAFYDGKFDVLLATTIVESGLDIPTANTMIVHRADMFGL 897

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           +QL+Q+RGRVGR +  + C L   P  PL+  +  RL +L + +    GF +A  DL  R
Sbjct: 898 SQLYQIRGRVGRAKTRAYCYLTTKPRAPLTPQAIKRLRLLASLDSLGAGFNLASHDLDLR 957

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             G +LG +QSG         EL+  +LE 
Sbjct: 958 GAGNLLGEEQSGHI--KEVGYELYQQMLEE 985


>gi|226355564|ref|YP_002785304.1| transcription-repair coupling factor [Deinococcus deserti VCD115]
 gi|226317554|gb|ACO45550.1| putative transcription-repair coupling factor [Deinococcus deserti
           VCD115]
          Length = 1041

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 154/528 (29%), Positives = 258/528 (48%), Gaps = 37/528 (7%)

Query: 197 KSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
           +  P +        +P     F+      +  R R   +E+    +     R+      G
Sbjct: 414 EQLPVLRRHPGTTDDPPVLSSFDKKDWAKAKERARKNAEEVAGKLLVQYAARQ---VTPG 470

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
                + +  ++I +N  F  T  Q+ ++K+ ++D+ + N   R++ GDVG GKT VAL 
Sbjct: 471 NAFPPQPEWDEQIEQNFKFELTSDQKISLKETMRDLEKPNPADRLISGDVGFGKTEVALR 530

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           A    V  G Q  I+ P  +LA+QH     +  +   + VE ++        R  L  + 
Sbjct: 531 AAHRVVGHGRQVAILVPTTLLAEQHTSTFVERFKGLPVRVEGLSRFTSPQQARSILNDLK 590

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ---------------- 416
            G+  I+IGTH L    I++  L L+IVDE+HRFGV Q+ KL                  
Sbjct: 591 AGKVDILIGTHRLLSGDIEFKDLGLIIVDEEHRFGVSQKEKLRALRGLPAMTDGKLELPP 650

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           +A A   L ++ATPIPRTL ++ +G  D+S I   P GRKPI+T++ P + +  V + + 
Sbjct: 651 EARAVDTLALSATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTILAPFDPV-TVRDAIL 709

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             +  G K ++I  +I      +         +L     + I + HGRM++ + E +M  
Sbjct: 710 NEIERGGKVFYIHDRIASIGARSLY-----LRNLVPE--ARIGVAHGRMNEEELEEIMLG 762

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G   +L++TT++E G+D+ +A+ I+IE A+  GLAQL+QLRGRVGR  + +   L Y
Sbjct: 763 FEQGAFDVLLSTTIVETGLDIPEANTILIERADRLGLAQLYQLRGRVGRRAQTAYAYLFY 822

Query: 597 HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
            P +++N+  RL  + + +D   G L+AE+D++ R  G ILG +Q G         +++ 
Sbjct: 823 PPRMTENAQRRLWAIADLQDLGSGHLLAEKDMEIRGVGNILGEEQHGH--VQAVSIDVYT 880

Query: 654 SLLEIARKDAKHI-LTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            LL  A    K   L   P ++     S R+    ++++E  +    G
Sbjct: 881 ELLSEAVAKLKGEKLEAPPSVSIDLPVSARLTPEYFEHDEEARIATYG 928


>gi|13470979|ref|NP_102548.1| transcription repair coupling factor [Mesorhizobium loti MAFF303099]
 gi|14021722|dbj|BAB48334.1| transcription repair coupling factor [Mesorhizobium loti MAFF303099]
          Length = 1165

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 138/458 (30%), Positives = 226/458 (49%), Gaps = 21/458 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +     +A  L+R   + +      +     +  +     P+  T
Sbjct: 561  DKLGGGAWQSRKAKLKRRLLDMAGQLIRIAAERQMRAAPALVPAEGLYDEFAARFPYEET 620

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q++AI  +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P  +L+
Sbjct: 621  DDQQTAIDSVRDDLGAGKPMDRLICGDVGFGKTEVALRAAFIAAMEGFQVAVVVPTTLLS 680

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++   +      I V   +  +      +  + +A GQ  I++GTHAL   SI +  
Sbjct: 681  RQHFKTFSQRFSGLPIRVAQASRLVGAKELAETKKALAEGQVDIVVGTHALLGSSISFKN 740

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L    T  HVL ++ATPIPRTL L   G  ++S I   P  
Sbjct: 741  LGLLIIDEEQHFGVKHKERLKDLKTDVHVLTLSATPIPRTLQLALTGVRELSLIATPPVD 800

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G  ++++ P+I +          E    L E  
Sbjct: 801  RMAVRTFISPFDPL-VIRETLLRERYRGGHSFYVVPRISDL--------SEIHEFLKESV 851

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M   + + +M++F +G   +L++TT++E G+D+  A+ +II  A+ FGL
Sbjct: 852  PELKVAVAHGQMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTLIIHRADMFGL 911

Query: 574  AQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            +QL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  
Sbjct: 912  SQLYQLRGRVGRS-KVRAYALFTLPANRKLTDTAERRLKVLQSLDTLGAGFQLASHDLDI 970

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R  G +LG +QSG         EL+  +LE A  + K 
Sbjct: 971  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEAVAEVKD 1006


>gi|256846696|ref|ZP_05552152.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_36A2]
 gi|256717916|gb|EEU31473.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_36A2]
          Length = 981

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 140/441 (31%), Positives = 242/441 (54%), Gaps = 12/441 (2%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             ++    +++      ++ ++ +     G   + +  + ++     PF+ T +Q  AI+
Sbjct: 405 KRKKDKLSEDIEIFAKEIIKIQAKRNLGNGFKFSKDTVMQEEFEETFPFTETPAQSKAIE 464

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           D+ +DM     M R++ GDVG GKT VA+ A   AV  G Q +++ P  +LA+QHYE   
Sbjct: 465 DVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDGKQVILLVPTTVLAEQHYERFS 524

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D I++  + L+I+DE
Sbjct: 525 ERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDDIKFKDVGLLIIDE 584

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I   P GR+ I T  
Sbjct: 585 EQKFGVKAKEKLKKIKGNIDVLTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIHTEY 644

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
           I  N+ + + + +   +S   + ++I   ++        S V+    L   +   +  IH
Sbjct: 645 IDNNK-NLIKDIILSEISREGQVFYIFNSVK-----MIESKVKEIRELLPEYI-KVGYIH 697

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +IIE  E  GL+Q++QLRGR
Sbjct: 698 GQMLPRDIKKNIQEFENGNIDVLVATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGR 757

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDLKQRKEGEILGIKQSG 640
           +GR  + S C +L +   +KN+  R   ++  +   G  +A ED K R  GEILG KQ G
Sbjct: 758 IGRSTKKSYCYMLMNENKTKNAKKREKSIREFDSLTGLDLAMEDSKIRGVGEILGEKQHG 817

Query: 641 MPK---FLIAQPELHDSLLEI 658
             +   + +    L++ +L++
Sbjct: 818 AVETFGYNLYMKMLNEEILKL 838


>gi|329943213|ref|ZP_08291987.1| transcription-repair coupling factor [Chlamydophila psittaci Cal10]
 gi|332287793|ref|YP_004422694.1| transcription-repair coupling factor [Chlamydophila psittaci 6BC]
 gi|325507232|gb|ADZ18870.1| transcription-repair coupling factor [Chlamydophila psittaci 6BC]
 gi|328814760|gb|EGF84750.1| transcription-repair coupling factor [Chlamydophila psittaci Cal10]
 gi|328915051|gb|AEB55884.1| transcription-repair coupling factor [Chlamydophila psittaci 6BC]
          Length = 1083

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 138/443 (31%), Positives = 210/443 (47%), Gaps = 14/443 (3%)

Query: 213 RKAKDFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
               +   +   R R L+   L+     LL +  Q            G+   K   + P+
Sbjct: 496 PDLHNLNGSKWKRSRDLSEKSLILYAEKLLQLEAQRSTTPSFIYPPHGEEVIKFEESFPY 555

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPI 330
             T  Q  AI+ I  DM     M R++ GD G GKT V + A   AV  G  Q ++M P 
Sbjct: 556 EETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAVCDGQRQVIVMVPT 615

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QHYE   +      I + +++        +K  E  A G   I+IGTH L   ++
Sbjct: 616 TILANQHYETFTQRMAGLPINIAVLSRFSEGKALKKIFEDTAQGNIDILIGTHKLINKNL 675

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++    L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL ++  G  D+S IT 
Sbjct: 676 EFKNPGLLIIDEEQRFGVKVKDFLKERYPTIDCLTVSATPIPRTLYMSLSGARDLSLITM 735

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T ++  N  + +   L+  L  G +AY I  +IE         +     +L
Sbjct: 736 PPLDRLPVSTFVLEHNE-ETLSAALRHELLRGGQAYVIHNRIESIF-----RLGNTIRNL 789

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + IA+ HG+MS  +  S+   FK+    +L+AT +IE GID+ +A+ I+++ A+ 
Sbjct: 790 VPE--ARIAVAHGQMSSDELASIFQKFKDQETNVLVATALIENGIDIPNANTILVDQADK 847

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL--KNTEDGFLIAEEDLK 626
           FG+A L+Q++GRVGR    + C  L      LS  +  RL  L  +    G  IA  DL+
Sbjct: 848 FGMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLQALNKQEYGGGMKIALHDLE 907

Query: 627 QRKEGEILGIKQSGMPKFLIAQP 649
            R  G ILG  QSG    +    
Sbjct: 908 IRGAGNILGTDQSGHISAIGFNL 930


>gi|126462211|ref|YP_001043325.1| transcription-repair coupling factor [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103875|gb|ABN76553.1| transcription-repair coupling factor [Rhodobacter sphaeroides ATCC
           17029]
          Length = 1165

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 134/450 (29%), Positives = 225/450 (50%), Gaps = 19/450 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    +IA  LMR   +        +     + +      P+  T
Sbjct: 547 DKLGGGAWQAKKARLKERIREIAERLMRIAAERHLRHAPILEAPHSLWEAFSARFPYQET 606

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q SAI D+++D+   + M R++ GDVG GKT VA+ A   A  AG Q  ++ P  +LA
Sbjct: 607 DDQLSAIADVVKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAALAGMQVAVICPTTLLA 666

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH+    +  +   + V  ++  +      +    +A G   I IGTHAL    ++   
Sbjct: 667 RQHFRSFAERFRGFPMKVRQLSRFVSAKEAAETRAGLADGTVDICIGTHALLAKGVKLKN 726

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L +  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 727 LGLLIIDEEQHFGVSHKERLKEMRSEVHVLTLTATPIPRTLQLSLTGVRDLSIIATPPVD 786

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P++ +  +            L +H 
Sbjct: 787 RLAIRTYVSEFDTV-TIREALLRERYRGGQSFFVVPRLSDLPDME--------AFLRDHV 837

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S  + HG+++  + +  M++F +G   +L+ATT++E G+D+  A+ +I+  A+ FGL
Sbjct: 838 PEVSYVVAHGQLAAGELDERMNAFYDGKFDVLLATTIVESGLDIPTANTMIVHRADMFGL 897

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           +QL+Q+RGRVGR +  + C L   P  PL+  +  RL +L + +    GF +A  DL  R
Sbjct: 898 SQLYQIRGRVGRAKTRAYCYLTTKPRAPLTPQAIKRLRLLASLDSLGAGFNLASHDLDLR 957

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             G +LG +QSG         EL+  +LE 
Sbjct: 958 GAGNLLGEEQSGHI--KEVGYELYQQMLEE 985


>gi|296271090|ref|YP_003653722.1| transcription-repair coupling factor [Thermobispora bispora DSM
           43833]
 gi|296093877|gb|ADG89829.1| transcription-repair coupling factor [Thermobispora bispora DSM
           43833]
          Length = 1164

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 130/449 (28%), Positives = 223/449 (49%), Gaps = 17/449 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W             +A ++  L          G   + +    +++    P+  TK Q 
Sbjct: 559 DWQKTKSRARKAVREIAAELIRLY--SARMASPGFAFSPDTPWQREMEDAFPYVETKDQL 616

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI+++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L  QH 
Sbjct: 617 EAIEEVKRDMERPVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVHQHL 676

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +      + V  ++     A  R+ L+ +  G   ++IGTH L    +++  L L+
Sbjct: 677 STFGERFAGFPVTVRPLSRFQSDAEIRETLDGLREGTVDVVIGTHRLLSPDVKFKDLGLL 736

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV+ +  + +  T   VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 737 IVDEEQRFGVEHKEAMKRMRTEVDVLAMSATPIPRTLEMGLTGIREMSTILTPPEERHPV 796

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            T + P +   ++   ++  L    + +++  ++          V  R   L     + I
Sbjct: 797 LTFVGPYDE-KQIAAAIRRELMRDGQTFFVHNRVRSID-----RVAARLAELVPE--ARI 848

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A+ HG+M++   E +M  F      +L+ TT++E G+DV +A+ +I++ A+ +GLAQLHQ
Sbjct: 849 AVAHGQMNEAQLEKIMVDFWERAYDVLVCTTIVESGLDVPNANTLIVDRADSYGLAQLHQ 908

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G I
Sbjct: 909 LRGRVGRGRERGYAYFLYPPDVPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNI 968

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           LG +QSG         +L+  ++  A ++
Sbjct: 969 LGTEQSGHI--AGVGFDLYVRMMAEAVEE 995


>gi|315650057|ref|ZP_07903136.1| transcription-repair coupling factor [Eubacterium saburreum DSM
           3986]
 gi|315487686|gb|EFU77990.1| transcription-repair coupling factor [Eubacterium saburreum DSM
           3986]
          Length = 1112

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 139/452 (30%), Positives = 227/452 (50%), Gaps = 17/452 (3%)

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            EW+          E +A ++  L   +   K +      +    ++      +  T  Q
Sbjct: 514 VEWSKTKSRVKTEVEEMAKELVSLYANRLNGKGVVY--GEDTLWQREFEEMFEYEETYDQ 571

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI+D  +D+     M R++ GDVG GKT +AL      ++ G Q + + P  ILA+QH
Sbjct: 572 LKAIEDAKRDLETGKIMDRLVCGDVGYGKTEIALRTAFKVIQEGYQVLYLVPTTILARQH 631

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y    +  ++  + V +++    +  + K +  +  G   I+IGTH L    +   KL L
Sbjct: 632 YNTFIQRMKDFPVNVALLSRFNTKKEQTKIVGDLNKGLLDIVIGTHRLLSKDVVPKKLGL 691

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           VIVDE+ RFGV+ + KL Q     +VL +TATPIPRTL ++  G  D+S + E P  RKP
Sbjct: 692 VIVDEEQRFGVRHKEKLKQLCENVNVLTLTATPIPRTLHMSLSGIRDLSVLEEPPVDRKP 751

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           I+T ++  +  + V E ++  ++ G + Y++  +I   +E     V     +L      +
Sbjct: 752 IQTYVMEYHD-ETVKEAIRREVARGGQVYYLYNRINNIEE-----VAAHVRTLLPDI--N 803

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +  +HGRM +   E+ M  F NG   +L+ TT++E G+DV +A+ II+ +A+  GL+QL+
Sbjct: 804 VEYVHGRMDERQLEARMVDFINGDVDVLVTTTIVETGLDVPNANTIIVHDADRLGLSQLY 863

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGRVGR +  +   L+Y     LS+ +  RL  ++       G  IA  DL+ R  G 
Sbjct: 864 QLRGRVGRSKRSAYAFLMYTGNKLLSEEASKRLKAIREFTELGSGIKIAMRDLEIRGAGN 923

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           +LG+ Q G  + +     L+  LL  A    K
Sbjct: 924 VLGVTQHGHMEEVGYD--LYVKLLNTAVTALK 953


>gi|260495382|ref|ZP_05815509.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_33]
 gi|260197160|gb|EEW94680.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_33]
          Length = 731

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 142/460 (30%), Positives = 250/460 (54%), Gaps = 12/460 (2%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             ++    +++      ++ ++ +     G   + +  + ++     PF+ T +Q  AI+
Sbjct: 155 KRKKAKLSEDIEIFAKEIIKIQAKRNLGNGFKFSKDTVMQEEFEETFPFTETPAQLKAIE 214

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           D+ +DM     M R++ GDVG GKT VA+ A   AV    Q +++ P  +LA+QHYE   
Sbjct: 215 DVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDSKQVILLVPTTVLAEQHYERFS 274

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D I++  + L+I+DE
Sbjct: 275 ERFKNYPVHIEILSRVQSKKEQVESLKRIENGSADLVIGTHRLLSDDIKFKDVGLLIIDE 334

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I   P GR+ I T  
Sbjct: 335 EQKFGVKAKEKLKKIKGDIDVLTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIHTEY 394

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
           I  N+ + + + +   +S   + ++I   ++  +     S V+    L   +   +  IH
Sbjct: 395 IDNNK-NLIKDIILSEISREGQVFYIFNSVKRIE-----SKVKEIRELLPEYI-KVDYIH 447

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +IIE  E  GL+Q++QLRGR
Sbjct: 448 GQMLPRDIKKNIQEFENGNIDVLVATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGR 507

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDLKQRKEGEILGIKQSG 640
           +GR  + S C +L +   +KN+  R   ++  ++  G  +A ED K R  GEILG KQ G
Sbjct: 508 IGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGLDLAMEDSKIRGVGEILGEKQHG 567

Query: 641 MPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
             +   + +    L++ +L++  +  + +   D +L   R
Sbjct: 568 AVETFGYNLYMKMLNEEILKLKGEAEEELDDVDVELNFPR 607


>gi|313848365|emb|CBY17369.1| putative transcription-repair coupling factor [Chlamydophila
           psittaci RD1]
          Length = 1085

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 138/443 (31%), Positives = 210/443 (47%), Gaps = 14/443 (3%)

Query: 213 RKAKDFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
               +   +   R R L+   L+     LL +  Q            G+   K   + P+
Sbjct: 498 PDLHNLNGSKWKRSRDLSEKSLILYAEKLLQLEAQRSTTPSFIYPPHGEEVIKFEESFPY 557

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPI 330
             T  Q  AI+ I  DM     M R++ GD G GKT V + A   AV  G  Q ++M P 
Sbjct: 558 EETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAVCDGQRQVIVMVPT 617

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QHYE   +      I + +++        +K  E  A G   I+IGTH L   ++
Sbjct: 618 TILANQHYETFTQRMAGLPINIAVLSRFSEGKALKKIFEDTAQGNIDILIGTHKLINKNL 677

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++    L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL ++  G  D+S IT 
Sbjct: 678 EFKNPGLLIIDEEQRFGVKVKDFLKERYPTIDCLTVSATPIPRTLYMSLSGARDLSLITM 737

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T ++  N  + +   L+  L  G +AY I  +IE         +     +L
Sbjct: 738 PPLDRLPVSTFVLEHNE-ETLSAALRHELLRGGQAYVIHNRIESIF-----RLGNTIRNL 791

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + IA+ HG+MS  +  S+   FK+    +L+AT +IE GID+ +A+ I+++ A+ 
Sbjct: 792 VPE--ARIAVAHGQMSSDELASIFQKFKDQETNVLVATALIENGIDIPNANTILVDQADK 849

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL--KNTEDGFLIAEEDLK 626
           FG+A L+Q++GRVGR    + C  L      LS  +  RL  L  +    G  IA  DL+
Sbjct: 850 FGMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLQALNKQEYGGGMKIALHDLE 909

Query: 627 QRKEGEILGIKQSGMPKFLIAQP 649
            R  G ILG  QSG    +    
Sbjct: 910 IRGAGNILGTDQSGHISAIGFNL 932


>gi|154487169|ref|ZP_02028576.1| hypothetical protein BIFADO_01009 [Bifidobacterium adolescentis
            L2-32]
 gi|154085032|gb|EDN84077.1| hypothetical protein BIFADO_01009 [Bifidobacterium adolescentis
            L2-32]
          Length = 1188

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 229/452 (50%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 587  DWAATKAKARKHVHEIAEDLVKLYSARQR--TKGYAFSKDTPWQKELEDAFPYQETADQL 644

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+   Q  ++ P  +L QQH+
Sbjct: 645  TTIDEVKSDMEKPIPMDRLICGDVGFGKTEIAVRAAFKAVQDSKQVAVLVPTTLLVQQHF 704

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++         + ++ +  G   ++IGTH L    I++  L LV
Sbjct: 705  ETFTERFEGFPVNVAAMSRFQTTKEINETIKGLEDGSVDVVIGTHKLLNPKIKFKDLGLV 764

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 765  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 824

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  ++++       SV  + + L     S +
Sbjct: 825  LTYVGAYED-AQVTAAIRRELLRGGQVFYVHNRVQDIS-----SVAAKIHELVPE--SHV 876

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 877  GIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 936

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 937  LRGRVGRGRERAYAYFLYDPTKPMTQQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 996

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 997  LGDEQSGHIE--GVGFDLYVRMVSEAVEQYKE 1026


>gi|294790717|ref|ZP_06755875.1| transcription-repair coupling factor [Scardovia inopinata F0304]
 gi|294458614|gb|EFG26967.1| transcription-repair coupling factor [Scardovia inopinata F0304]
          Length = 1227

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 122/452 (26%), Positives = 227/452 (50%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +         + +A  +  L   +Q     G   + +     ++    P+  T  Q 
Sbjct: 615  DWAATKARAKKRVKEIAQDLVKLYAARQR--TAGFAFSPDTPWQHELEEAFPYQETPDQL 672

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   A++   Q  ++ P  +LAQQHY
Sbjct: 673  TTIDEVKADMEKPIPMDRLICGDVGFGKTEIAVRAAFKAIQDSKQVAVLVPTTLLAQQHY 732

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + +++++     A   + ++ ++ G   ++IGTH L    I +  L LV
Sbjct: 733  ETFSERFEGFPVTIKMMSRFQTVAENAQTVKELSEGTVDLVIGTHKLLNPKITFKDLGLV 792

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 793  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 852

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  ++++        V    + L     + I
Sbjct: 853  LTYVGAYED-AQVTAAIRRELLRGGQVFYVHNRVQDIS-----KVAAHIHDLVPE--ARI 904

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M +   ++V+  F +    +L+ TT++E G+D+ +A+ ++++ A+ FGL+QLHQ
Sbjct: 905  GTAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIVETGLDISNANTLVVDRADRFGLSQLHQ 964

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P   +++ ++ RL  +        G+ +A +DL+ R  G +
Sbjct: 965  LRGRVGRGRERAYAYFLYDPSKTMTQTAHDRLETIAQNTALGSGYDVAMKDLEIRGTGNL 1024

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A ++ K 
Sbjct: 1025 LGDEQSGHIE--GVGFDLYVRMVSDAVQEYKE 1054


>gi|254302466|ref|ZP_04969824.1| transcription-repair coupling factor (TRCF) [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148322658|gb|EDK87908.1| transcription-repair coupling factor (TRCF) [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 981

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 141/460 (30%), Positives = 251/460 (54%), Gaps = 12/460 (2%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             ++    +++      ++ ++ +     G   + +  + ++     PF+ T +Q  AI+
Sbjct: 405 KRKKAKLSEDIEIFAKEIIKIQAKRNLGNGFKFSKDTVMQEEFEETFPFTETPAQLKAIE 464

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           D+ +DM     M R++ GDVG GKT VA+     AV    Q +++ P  +LA+QHYE   
Sbjct: 465 DVKRDMESGKVMDRLICGDVGFGKTEVAIRTTFKAVMDSKQVILLVPTTVLAEQHYERFS 524

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D I++  + L+I+DE
Sbjct: 525 ERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDDIKFKDVGLLIIDE 584

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I   P GR+ I+T  
Sbjct: 585 EQKFGVKAKEKLKKIKGDLDVLTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIQTEY 644

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
           I  N+ + + + +   +S   + ++I   ++  +     S V+    L   +   ++ IH
Sbjct: 645 IDNNK-NLIRDIILSEISREGQVFYIFNSVKRME-----SKVKEIRELLPEYI-KVSYIH 697

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +IIE  E  GL+Q++QLRGR
Sbjct: 698 GQMLPRDIKKNIQEFENGNVDVLVATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGR 757

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDLKQRKEGEILGIKQSG 640
           +GR  + S C +L +   +KN+  R   ++  ++  G  +A ED K R  GEILG KQ G
Sbjct: 758 IGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGIDLAMEDSKIRGVGEILGEKQHG 817

Query: 641 MPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
             +   + +    L++ +L++  +  + +   D +L   R
Sbjct: 818 AVETFGYNLYMKMLNEEILKLKGEAEEELDEVDIELNFPR 857


>gi|77463357|ref|YP_352861.1| transcription-repair coupling factor (helicase) [Rhodobacter
           sphaeroides 2.4.1]
 gi|77387775|gb|ABA78960.1| transcription-repair coupling factor (helicase) [Rhodobacter
           sphaeroides 2.4.1]
          Length = 1165

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 134/450 (29%), Positives = 225/450 (50%), Gaps = 19/450 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    +IA  LMR   +        +     + +      P+  T
Sbjct: 547 DKLGGGAWQAKKARLKERIREIAERLMRIAAERHLRHAPILEAPHSLWEAFSARFPYQET 606

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q SAI D+++D+   + M R++ GDVG GKT VA+ A   A  AG Q  ++ P  +LA
Sbjct: 607 DDQLSAIADVVKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAALAGMQVAVICPTTLLA 666

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH+    +  +   + V  ++  +      +    +A G   I IGTHAL    ++   
Sbjct: 667 RQHFRSFAERFRGFPMKVHQLSRFVSAREAAETRSGLADGTVDICIGTHALLAKGVKLKN 726

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L +  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 727 LGLLIIDEEQHFGVSHKERLKEMRSEVHVLTLTATPIPRTLQLSLTGVRDLSIIATPPVD 786

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P++ +  +            L +H 
Sbjct: 787 RLAIRTYVSEFDTV-TIREALLRERYRGGQSFFVVPRLSDLPDME--------AFLRDHV 837

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S  + HG+++  + +  M++F +G   +L+ATT++E G+D+  A+ +I+  A+ FGL
Sbjct: 838 PEVSYVVAHGQLAAGELDERMNAFYDGKFDVLLATTIVESGLDIPTANTMIVHRADMFGL 897

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           +QL+Q+RGRVGR +  + C L   P  PL+  +  RL +L + +    GF +A  DL  R
Sbjct: 898 SQLYQIRGRVGRAKTRAYCYLTTKPRAPLTPQAIKRLRLLASLDSLGAGFNLASHDLDLR 957

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             G +LG +QSG         EL+  +LE 
Sbjct: 958 GAGNLLGEEQSGHI--KEVGYELYQQMLEE 985


>gi|310815553|ref|YP_003963517.1| transcription-repair coupling factor [Ketogulonicigenium vulgare
           Y25]
 gi|308754288|gb|ADO42217.1| transcription-repair coupling factor [Ketogulonicigenium vulgare
           Y25]
          Length = 1152

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 134/448 (29%), Positives = 227/448 (50%), Gaps = 17/448 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
               A++    + +     +L+ +  +        ++   +I ++ L   P+  T  Q  
Sbjct: 545 GAWQAKKARLKERIRMIADSLIRVAAERALRTAPEVDPPSEIWEQFLARFPYQETDDQLQ 604

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI D++ D+   + M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA+QH++
Sbjct: 605 AIGDVIGDLQAGSPMDRLICGDVGFGKTEVAIRAAFVAAMSGLQVAVVAPTTLLARQHFK 664

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +   + V  ++  +         + +A G   ++IGTHA+    +++  L L++
Sbjct: 665 SFAERFRGFPLNVRPLSRFVSAKEAEATRKGLADGTVDVVIGTHAVLAKGVKFKSLGLLV 724

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+  FGVQ + +L Q  +  HVL +TATPIPRTL L+  G  D+S I   P  R  I+
Sbjct: 725 IDEEQHFGVQHKERLKQMRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPIDRLAIR 784

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + I  V E L      G +++ + P++ +  E       E              
Sbjct: 785 TYVSEFDTI-TVREALLREHYRGGQSFIVVPRLSDLPEMEEFLQREV-------PEVKYV 836

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +I+  A+ FGLAQL+Q+
Sbjct: 837 TAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIVHRADMFGLAQLYQI 896

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R  G +L
Sbjct: 897 RGRVGRSKVRAYAYLTTKPRQKLTPAAEKRLRVLGSLDSLGAGFQLASQDLDIRGAGNLL 956

Query: 635 GIKQSGMPKFLIAQPELHDSLL--EIAR 660
           G +QSG         EL+  +L  EIAR
Sbjct: 957 GEEQSGQI--REVGYELYQQMLEDEIAR 982


>gi|256828791|ref|YP_003157519.1| transcription-repair coupling factor [Desulfomicrobium baculatum DSM
            4028]
 gi|256577967|gb|ACU89103.1| transcription-repair coupling factor [Desulfomicrobium baculatum DSM
            4028]
          Length = 1146

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 148/484 (30%), Positives = 250/484 (51%), Gaps = 18/484 (3%)

Query: 222  SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            +  R R +  ++    + +   RK  K     PI+   ++  +   +  F  T+ QE AI
Sbjct: 554  ARERTRQSIAKIARDLVEMYAFRKIAKGFQYNPIS---ELYWEFEASFGFEETRDQEKAI 610

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
             D+L DM +   M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QH++  
Sbjct: 611  ADVLADMEKPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVALLCPTTVLAEQHFQTF 670

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            ++  +   I V +++  +P A +++ LE    GQ  ++IGTH +    +++  L L+I+D
Sbjct: 671  RQRMEPFSITVGLLSRFVPAAGQKRTLEAARRGQVDVLIGTHRMLSKDVEFANLALLILD 730

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+ RFGV+ + ++ +  +   VL +TATPIPRTL L+  G   +S I   P  RKP++T 
Sbjct: 731  EEQRFGVKHKERIKKMRSTIDVLTLTATPIPRTLQLSLSGIRGLSVIETPPRDRKPVETS 790

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            ++  +   ++   L+  L+ G + +W+  +++  +      VVE  +SL     + + + 
Sbjct: 791  LLERD-PAQLKVILERELARGGQVFWVYNRVQGLE-----RVVEFVSSLVPG--ARVGMG 842

Query: 522  HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            HG+M   D E  M  F +G   +L+ T +IE G+D   A+ +I++ A+ FGL QL+QLRG
Sbjct: 843  HGQMKAHDLEETMHKFWHGELDVLVCTAIIESGLDFPRANTLIVDQAQLFGLGQLYQLRG 902

Query: 582  RVGRGEEISSCILLYH--PPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEILGI 636
            RVGR  E +    +      L + S  RL +   +     GF +A EDL+ R  G ILG 
Sbjct: 903  RVGRSSEQAYAYFIIPDLDRLQETSRKRLKIILDMDYLGAGFKVAMEDLRLRGAGNILGE 962

Query: 637  KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ-DPDLTSVRGQSIRILLYLYQYNEAFQ 695
             QSG    +     L     E+ R     + T+ +P+L ++  Q++    Y+    E   
Sbjct: 963  AQSGTIGKVGLDLFLEMLEEEVTRLRGGKVETEIEPEL-NLGFQALIPEEYVADGKERLH 1021

Query: 696  FIRA 699
            + +A
Sbjct: 1022 YYKA 1025


>gi|226323668|ref|ZP_03799186.1| hypothetical protein COPCOM_01443 [Coprococcus comes ATCC 27758]
 gi|225207852|gb|EEG90206.1| hypothetical protein COPCOM_01443 [Coprococcus comes ATCC 27758]
          Length = 813

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 142/457 (31%), Positives = 236/457 (51%), Gaps = 17/457 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW     +       +A  +  L   +Q K+        +    ++     PF  T+ Q+
Sbjct: 212 EWHRTKSKVKTAVWQIAKDLVELYAVRQSKEG--FVYEKDTVWQKEFEEMFPFEETEDQQ 269

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI+   +DM     M R++ GDVG GKT +A+ A   AV+   Q V + P  ILAQQHY
Sbjct: 270 LAIEATKRDMESPKIMDRLICGDVGFGKTEIAIRAAFKAVQENKQVVYLVPTTILAQQHY 329

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +  +   + V+++      A ++K +E +  GQ  IIIGTH +    + +  L L+
Sbjct: 330 NTFVQRMKEFPVRVDLLCRFRTPAQQKKTIEDLKKGQVDIIIGTHRVLSKDVAFKDLGLL 389

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGVQ + K+ +      VL +TATPIPRTL ++ +G  D+S + E P  R PI
Sbjct: 390 IIDEEQRFGVQHKEKIKKLKENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPVDRMPI 449

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  N  + V E ++  +S   + Y++  ++++  E     +  +   L     +++
Sbjct: 450 QTYVMEEND-EMVREAIEREISRQGQVYYVYNRVQDIAE-----MAAKIQKLVPD--ANV 501

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HG+M +   E +M  F NG   +L++TT+IE G+D+ +A+ +II +A+  GL+QL+Q
Sbjct: 502 AYAHGQMREHKLEDIMYDFINGEIDVLVSTTIIETGLDISNANTMIIHDADRMGLSQLYQ 561

Query: 579 LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGR   ++   LLY     L + +  RLS ++   D   G  IA  DL+ R  G +
Sbjct: 562 LRGRVGRSNRMAYAFLLYRRDKMLREVAEKRLSAIREFTDLGSGVKIAMRDLEIRGAGNL 621

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           LG +Q G    +     L+  +L  A +  K  + ++
Sbjct: 622 LGEEQHGHMDAVGYD--LYCKMLSEAVRHLKGEIPEE 656


>gi|187918482|ref|YP_001884045.1| transcription-repair coupling factor [Borrelia hermsii DAH]
 gi|119861330|gb|AAX17125.1| transcription-repair coupling factor [Borrelia hermsii DAH]
          Length = 1122

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 140/439 (31%), Positives = 228/439 (51%), Gaps = 19/439 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A Q+  L   ++  K    P   + +          +  T  Q +
Sbjct: 533 WEKKKANAKKRIDAIADQLVSLYSARESTKGFQYP--QDNEWQLLFESEFAYDETPDQLT 590

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI +I QDM     M R+L GDVG GKT VA+ A   AV    Q  I++P  ILA+QH+ 
Sbjct: 591 AISEIKQDMMSLKVMDRLLCGDVGFGKTEVAMRAAFKAVMGTKQVAILSPTTILAEQHFN 650

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I + +++  + ++  R+ ++ +A G+  IIIGTH +    I Y  L L+I
Sbjct: 651 TFKKRFKNFPIKIAMMSRFIKKSKEREIIKNLATGEIDIIIGTHKILSKKIIYKNLGLII 710

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 711 IDEEQRFGVREKEKLKEIKVSVDCLTLSATPIPRSLHMSLIKLRDISVLKTPPQNRIKIE 770

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           T +   +   I   IE     LS   + +++   I+E      ++++E+         + 
Sbjct: 771 TYVEEFSELLIKHAIEH---ELSRDGQVFFVHHNIQELDL--IKAMLEKV-----VPYAR 820

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA IH R++    E++M  F N + ++L++TT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 821 IATIHARLTGDQIENIMHDFINKSYQVLLSTTIIENGIDIENANTIIINNANRFGLAQLY 880

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR  + +    LY     L++++  RL  +    +   GF IA +D++ R  G 
Sbjct: 881 QLRGRVGRSSQKAFAYFLYKESSSLNESAIERLRAISEFSELGAGFQIAMKDMEIRGVGN 940

Query: 633 ILGIKQSGMPKFLIAQPEL 651
           +LG +Q G  + +     L
Sbjct: 941 LLGKEQHGEIESIGLDYYL 959


>gi|257057197|ref|YP_003135029.1| transcription-repair coupling factor Mfd [Saccharomonospora viridis
            DSM 43017]
 gi|256587069|gb|ACU98202.1| transcription-repair coupling factor Mfd [Saccharomonospora viridis
            DSM 43017]
          Length = 1199

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 133/452 (29%), Positives = 229/452 (50%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +A ++  L   +Q     G   + +    +++    PF+ T  Q 
Sbjct: 586  DWKKTKARARKAVKEIAAELVQLYAARQAA--PGHAFSPDTPWQRELEDAFPFTETADQL 643

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q V++ P  ILAQQH 
Sbjct: 644  AAIDEVKRDMERDVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTILAQQHL 703

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  ++  + ++ ++         + +  +A G+  I+IGTH L Q +++Y  L LV
Sbjct: 704  ATFSERMRSFPVTIKGLSRFTDPHEAEQVINGLADGEVDIVIGTHRLLQSNVRYKDLGLV 763

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 764  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPI 823

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   ++  L    + +++  ++   +         R   L     + +
Sbjct: 824  LTYVGAYDD-KQVAAAIRRELLRDGQVFYVHNRVSSIE-----RAARRLRELVPE--ARV 875

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E ++  F      +L+ TT++E G+D+ +A+ +I+E+A+  GLAQLHQ
Sbjct: 876  VTAHGQMNEHRLEQIIQGFWEREYDVLVCTTIVETGLDISNANTLIVEHADQLGLAQLHQ 935

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY    PL++ ++ RL+ +    +   G  +A +DL+ R  G I
Sbjct: 936  LRGRVGRGRERGYAYFLYPADKPLTETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGNI 995

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG         +L+  L+  A +  + 
Sbjct: 996  LGAEQSGHI--AGVGFDLYVRLVGEAVEAFRR 1025


>gi|323136889|ref|ZP_08071969.1| transcription-repair coupling factor [Methylocystis sp. ATCC 49242]
 gi|322397650|gb|EFY00172.1| transcription-repair coupling factor [Methylocystis sp. ATCC 49242]
          Length = 1181

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 139/455 (30%), Positives = 229/455 (50%), Gaps = 19/455 (4%)

Query: 222  SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
               R+    + +      L+ +  Q +      +     +  +     P+  T+ Q +AI
Sbjct: 581  WQTRKARMKNRIREMAKGLIAIAAQRQLRQAPKLAPPEGLYDEFCARFPYDETEDQLAAI 640

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            + +L D++    M R++ GDVG GKT VAL A   A   G Q  ++AP  +LA+QHY+  
Sbjct: 641  EAVLDDLASGRPMDRLVCGDVGFGKTEVALRAAFCAAINGKQVAVVAPTTLLARQHYKTF 700

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
             +      I +  ++  +  A  R+  + +  G+  I++GTHA+    + +  L LVI+D
Sbjct: 701  SERFAGLPIKIGRLSRMVGAAEARETKKELGEGKVDILVGTHAILGKGVNFKDLGLVIID 760

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+  FGV  + +L +     HVL ++ATPIPRTL L   G  ++S IT  P  R  +++ 
Sbjct: 761  EEQHFGVGHKERLKELRAEVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRLAVRSF 820

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAI 520
            I P + +  V E L      G +A+++CP+IE+ +        E    L E+   +   I
Sbjct: 821  ISPFDPL-IVREALLRERYRGGQAFFVCPRIEDLE--------EAAAFLRENLAEAKFVI 871

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+MS  + E  M +F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLR
Sbjct: 872  AHGQMSPSELEDKMSAFYDGRFDILLSTTIVESGLDIPSANTLIVWRADMFGLAQLYQLR 931

Query: 581  GRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            GRVGR  +  +  L   P    ++  +  RL VL+  +    GF +A  DL  R  G +L
Sbjct: 932  GRVGRS-KTRAYALFTTPANRAITPQAQKRLEVLQTLDTLGAGFQLASHDLDIRGAGNLL 990

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            G +QSG         EL+  +L  A    K  + +
Sbjct: 991  GEEQSGHI--KEVGYELYQQMLGDAITLLKAGVEE 1023


>gi|298528164|ref|ZP_07015568.1| transcription-repair coupling factor [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511816|gb|EFI35718.1| transcription-repair coupling factor [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1144

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 145/481 (30%), Positives = 237/481 (49%), Gaps = 27/481 (5%)

Query: 192 DLLQKKSFPSIAE-AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
            L+QK   P  A+ A + +          W+          + +A  +  +    Q K  
Sbjct: 526 SLVQKYKGPDGADPALDKLG------GANWSKTKNRVRKAIQKIAKDLVDMYA--QRKVV 577

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            G   +   ++ Q+      F  T  QE AI++++QDM     M R++ GDVG GKT VA
Sbjct: 578 KGYSYSPPEELYQEFANTFGFQETPDQEQAIREVMQDMESDEPMDRLVCGDVGFGKTEVA 637

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           + A   AV+ G Q  ++ P  +LA+QHY+   +  Q+  I V +++  +P+  ++  LE 
Sbjct: 638 MRAAFRAVQDGKQVALLCPTTVLAEQHYQNFVQRMQDFAINVRMLSRFVPRNRQKIILEG 697

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
              G+  I+IGTH +    +   +L L+I+DE+ RFGV+ + KL Q      VL +TATP
Sbjct: 698 ARKGEVDILIGTHRILSQDVILPRLSLMILDEEQRFGVRHKEKLKQYRQNIDVLTLTATP 757

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL L+  G   +S I   P  RKP+++ II  +R D +   L+  L    + +W+  
Sbjct: 758 IPRTLQLSVSGIRTLSVIETPPLDRKPVESSIIERDR-DFLRHALQRELDRQGQVFWVYN 816

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +++  +     SV+E    L     + + + HG+M +   E  M  F +    +L+ T +
Sbjct: 817 RVQGLE-----SVMEYVQDLMPE--ARVDMAHGQMPERILEENMHRFWHHEIDILVCTAI 869

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRL 608
           IE G+D   A+ +I++ A  FGL QL+QLRGRVGR +E +    +      L + S  R+
Sbjct: 870 IESGLDFPRANTLIVDQAHMFGLGQLYQLRGRVGRSQEQAYAYFIVPSVRELGEKSRKRM 929

Query: 609 SV---LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            +   +     GF +A EDL+ R  G ILG  QSG    +          LE+ +++   
Sbjct: 930 QIILDMDYLGAGFQVAMEDLRLRGAGNILGEVQSGQIGKVGLDL-----FLEMMQEEVGK 984

Query: 666 I 666
           +
Sbjct: 985 L 985


>gi|221639209|ref|YP_002525471.1| transcription-repair coupling factor [Rhodobacter sphaeroides
           KD131]
 gi|221159990|gb|ACM00970.1| Transcription-repair coupling factor [Rhodobacter sphaeroides
           KD131]
          Length = 1168

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 134/450 (29%), Positives = 225/450 (50%), Gaps = 19/450 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    +IA  LMR   +        +     + +      P+  T
Sbjct: 550 DKLGGGAWQAKKARLKERIREIAERLMRIAAERHLRHAPILEAPHSLWEAFSARFPYQET 609

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q SAI D+++D+   + M R++ GDVG GKT VA+ A   A  AG Q  ++ P  +LA
Sbjct: 610 DDQLSAIADVVKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAALAGMQVAVICPTTLLA 669

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH+    +  +   + V  ++  +      +    +A G   I IGTHAL    ++   
Sbjct: 670 RQHFRSFSERFRGFPMKVRQLSRFVSAKEAAETRAGLADGTVDICIGTHALLAKGVKLKN 729

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L +  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 730 LGLLIIDEEQHFGVSHKERLKEMRSEVHVLTLTATPIPRTLQLSLTGVRDLSIIATPPVD 789

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P++ +  +            L +H 
Sbjct: 790 RLAIRTYVSEFDTV-TIREALLRERYRGGQSFFVVPRLSDLPDME--------AFLRDHV 840

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S  + HG+++  + +  M++F +G   +L+ATT++E G+D+  A+ +I+  A+ FGL
Sbjct: 841 PEVSYVVAHGQLAAGELDERMNAFYDGKFDVLLATTIVESGLDIPTANTMIVHRADMFGL 900

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           +QL+Q+RGRVGR +  + C L   P  PL+  +  RL +L + +    GF +A  DL  R
Sbjct: 901 SQLYQIRGRVGRAKTRAYCYLTTKPRAPLTPQAIKRLRLLASLDSLGAGFNLASHDLDLR 960

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             G +LG +QSG         EL+  +LE 
Sbjct: 961 GAGNLLGEEQSGHI--KEVGYELYQQMLEE 988


>gi|219682214|ref|YP_002468598.1| transcription-repair coupling factor [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621947|gb|ACL30103.1| transcription-repair coupling factor [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 812

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 150/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +        A Q+  +  +++ K   G       +       +  F  T  Q 
Sbjct: 214 DWNKEKHKISKTVYDHAAQLLHIYAKRESK--TGFAFKKNIEKYDLFCNDCSFKTTSDQN 271

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +K +L+DMS+   M R++ GDVG GKT +A+ A   AV    Q  I+ P  +LAQQHY
Sbjct: 272 EVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQHY 331

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +  K    N  + + I++    Q  +    +   +G+ +IIIGTH L   +I++  L L+
Sbjct: 332 KNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLGLL 391

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV  +  + +  +   +L +TATPIPRTL +   G  D+S I + PA R  I
Sbjct: 392 IIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRLAI 451

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           KT I   + I  + + +   +S G + Y+I  +++     N  ++ ER + L     +SI
Sbjct: 452 KTFIQEYSPI-LIRKTILREISRGGQVYYIYNKVQ-----NIMNIAERLSILIPE--ASI 503

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I HG+M +ID + VM+ F N    +LI TT+IE G+D+  A+ IIIEN++HFGL+QLHQ
Sbjct: 504 KIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLSQLHQ 563

Query: 579 LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGR+GR    +  +LL +    ++ ++  RL  + + ++   GF ++ +DL+ R  GEI
Sbjct: 564 LRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRGVGEI 623

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG +QSG  K +     +   LL+ A    K
Sbjct: 624 LGKEQSGHIKNIGFSLYMD--LLKNAIDLLK 652


>gi|75675705|ref|YP_318126.1| transcription-repair coupling factor [Nitrobacter winogradskyi
            Nb-255]
 gi|74420575|gb|ABA04774.1| transcription-repair coupling factor [Nitrobacter winogradskyi
            Nb-255]
          Length = 1174

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 142/455 (31%), Positives = 233/455 (51%), Gaps = 21/455 (4%)

Query: 224  ARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
             + R A  +    +IA  L+R   +        + V+  +  +     P+  T+ Q  AI
Sbjct: 574  WQARKAKLKSRIREIAGELIRIAAERHLREAPKLPVQSGLYDEFCARFPYEETEDQLGAI 633

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +  L+D+     M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA+QH +  
Sbjct: 634  QASLEDLESGKPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTF 693

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
             +  +   + V   +  +      K  + IA G   I++GTHAL   SI++  L L++VD
Sbjct: 694  TERFRGFPVNVAQASRLVSPKELAKVKKGIADGSVDIVVGTHALLGKSIKFRDLGLLVVD 753

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+  FGV  + +L Q     HVL ++ATPIPRTL L   G  D+S I   P  R  ++T 
Sbjct: 754  EEQHFGVSHKERLKQLRAHVHVLTLSATPIPRTLQLALTGVRDLSIIASPPVDRLAVRTF 813

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520
            + P + +  + E L      G +A+++ P++ +  E          + L +H     +A+
Sbjct: 814  VAPHDPL-MIREALLRERYRGGQAFYVVPRVSDLAEVK--------DFLDKHVPEMKVAV 864

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+M     E ++ +F +G   +L++TT++E G+D+  A+ +I+  ++ FGLAQL+QLR
Sbjct: 865  AHGQMPPTVIEDIISAFYDGKYDVLLSTTIVESGLDIPTANTLIVHRSDMFGLAQLYQLR 924

Query: 581  GRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            GRVGR  ++ +  L   P    ++  +  RL VL++ E    GF +A  DL  R  G +L
Sbjct: 925  GRVGRS-KLRAYALFTLPSKHKITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLL 983

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            G +QSG         EL+ S+LE A ++ K  +T+
Sbjct: 984  GEEQSGHI--KEVGFELYQSMLEEAIENLKTGVTE 1016


>gi|241204639|ref|YP_002975735.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240858529|gb|ACS56196.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 1166

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 135/459 (29%), Positives = 232/459 (50%), Gaps = 21/459 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKI-AQKILRNIPFSPT 274
            D       + R A  +     +A  L+R    +     P+    +    +     P+  T
Sbjct: 565  DKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLTRHAPMLTTPEGLYDEFAARFPYDET 624

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + QE+AI+ +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P  +L+
Sbjct: 625  EDQENAIEAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGAQVAVVVPTTLLS 684

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++      +   + ++  +  +         + +A G+  I++GTHAL    I++  
Sbjct: 685  RQHFKTFSDRFRGLPVRIQQASRLVGAKELALTKKEVAEGKTDIVVGTHALLGAGIKFAN 744

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 745  LGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVD 804

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G +++++CP++ + +        +    L    
Sbjct: 805  RMAVRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLADLE--------DVHAFLQSDL 855

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I+  A+ FGL
Sbjct: 856  PELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGL 915

Query: 574  AQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  
Sbjct: 916  AQLYQLRGRVGRS-KVRAFALFTLPVNKVLTATAERRLKVLQSLDTLGAGFQLASHDLDI 974

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            R  G +LG +QSG         EL+  +LE A  + K +
Sbjct: 975  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEAVAEVKGV 1011


>gi|294784401|ref|ZP_06749692.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_27]
 gi|294487973|gb|EFG35328.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_27]
          Length = 981

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 140/441 (31%), Positives = 243/441 (55%), Gaps = 12/441 (2%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             ++    +++      ++ ++ +     G   + +  + ++     PF+ T +Q  AI+
Sbjct: 405 KRKKDKLSEDIEIFAKEIIKIQAKRNLGNGFKFSKDTVMQEEFEETFPFTETPAQSKAIE 464

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           D+ +DM     M R++ GDVG GKT VA+ A   AV  G Q +++ P  +LA+QHYE   
Sbjct: 465 DVKRDMESGKVMDRLICGDVGFGKTEVAIRATFKAVMDGKQVILLVPTTVLAEQHYERFS 524

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D I++  + L+I+DE
Sbjct: 525 ERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDDIKFKDVGLLIIDE 584

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I   P GR+ I T  
Sbjct: 585 EQKFGVKAKEKLKKIKGNIDVLTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIHTEY 644

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
           I  N+ + + + +   +S   + ++I   ++        S V+    L   +   +  IH
Sbjct: 645 IDNNK-NLIKDIIFSEISREGQVFYIFNSVK-----MIESKVKEIRELLPEYI-KVGYIH 697

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +IIE  E  GL+Q++QLRGR
Sbjct: 698 GQMLPRDIKKNIQEFENGNIDVLVATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGR 757

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDLKQRKEGEILGIKQSG 640
           +GR  + S C +L +   +KN+  R   ++  ++  G  +A ED K R  GEILG KQ G
Sbjct: 758 IGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGIDLAMEDSKIRGVGEILGEKQHG 817

Query: 641 MPK---FLIAQPELHDSLLEI 658
             +   + +    L++ +L++
Sbjct: 818 AVETFGYNLYMKMLNEEILKL 838


>gi|94266121|ref|ZP_01289836.1| Transcription-repair coupling factor [delta proteobacterium MLMS-1]
 gi|93453318|gb|EAT03758.1| Transcription-repair coupling factor [delta proteobacterium MLMS-1]
          Length = 1162

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 141/482 (29%), Positives = 236/482 (48%), Gaps = 23/482 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            D  W +  ++       +A  +  L  ++Q  +      +  G++  ++  + P+  T  
Sbjct: 549  DNSWLATRQKVKKAVWQVARDLLKLYAKRQLAEGNR--FSPPGEMYHELEESFPYDETPG 606

Query: 277  QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
            Q  AI +++ D+     M R++ GDVG GKT VA+ A    VE GGQ  ++ P  +LA+Q
Sbjct: 607  QLKAIGEVIDDLCSSKPMDRLVCGDVGYGKTEVAVRAAFKVVEDGGQVAVLVPTTVLAEQ 666

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            H    ++      + ++ +      A +++ +  +A  +  I+IGTH L    +++ +L 
Sbjct: 667  HAATFRERLAGFPVRIDSLNRFRSSAEQKRLVADLAAAKIDIVIGTHRLLSADVKFRRLG 726

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+IVDE+HRFGV  + K+ +  +   VL +TATPIPRTL L+ LG  D+S I+  P  R+
Sbjct: 727  LLIVDEEHRFGVSHKEKIKKLRSGVDVLTLTATPIPRTLQLSLLGVRDLSVISSPPRLRR 786

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             +KT I   + +  + E +   L    + + +  ++    E   R+            T+
Sbjct: 787  AVKTFIARHDDL-VIKEAIMRELGRDGQVFLVHNRVSSIHEVATRAQ-------QLVPTA 838

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             +A+ HG+M     E +M  F      +L+ TT+IE G+D+ DA+ III  A+  GLA++
Sbjct: 839  QVAVAHGQMPARQLEEIMVRFVRREINVLVCTTIIESGLDIPDANTIIITRADRLGLAEI 898

Query: 577  HQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            +QLRGRVGR  + +   LL      L+  +  RL  L +  +   GF +A  DL+ R  G
Sbjct: 899  YQLRGRVGRSRQQAYAYLLVPALDDLAGEARHRLQALMDYNELGGGFKLALSDLQIRGGG 958

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ------DPDLTSVRGQSIRILL 685
             ILG  QSG    +     L   LL+    D K  L +      DP+  +  G+     +
Sbjct: 959  NILGESQSGNIAAVGYDMYLD--LLQKTVLDLKRRLREGEETSSDPETMAEVGEEFEPEI 1016

Query: 686  YL 687
             L
Sbjct: 1017 KL 1018


>gi|291303253|ref|YP_003514531.1| transcription-repair coupling factor [Stackebrandtia nassauensis DSM
            44728]
 gi|290572473|gb|ADD45438.1| transcription-repair coupling factor [Stackebrandtia nassauensis DSM
            44728]
          Length = 1351

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 127/438 (28%), Positives = 217/438 (49%), Gaps = 15/438 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A ++  L   +Q     G     +    +++    P+  T  Q 
Sbjct: 747  DWQKAKSRAKKAVREIAAELIKLYAARQA--TEGHAFGPDTPWQRELEDAFPYQETPDQA 804

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI ++  DM  +  M R++ GDVG GKT +A+ A   AV  G Q  ++ P  +LA QH 
Sbjct: 805  GAIDEVKSDMMGRTPMDRLICGDVGYGKTEIAVRAAFKAVTDGKQVAVLVPTTLLASQHL 864

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + ++ ++     A   +  + +  G+  I++GTH L Q   ++  L LV
Sbjct: 865  NTFTERMSQFPVTIKQLSRFQTDAEAEQIRKGLIAGEVDIVVGTHRLLQTETRFKDLGLV 924

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + KL        VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 925  IVDEEQRFGVEHKEKLKALRAHVDVLAMSATPIPRTLEMAITGIREMSTITTPPEERHPV 984

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L    + +++  ++E  +++       R   +     + +
Sbjct: 985  LTFVGGYED-KQVGAAIRRELLRDGQVFYLHNRVESIEKAAT-----RLREIVPE--ARV 1036

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E +M  F NG   +L++TT+IE GID+ +A+ +I+E A+  GL+QLHQ
Sbjct: 1037 VVAHGKMGENRLEQIMQDFWNGEFDVLVSTTIIESGIDIPNANTLIVERADLLGLSQLHQ 1096

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            +RGRVGRG E +    +Y P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 1097 IRGRVGRGRERAYAYFMYPPEKPLTEQAHERLATVAQHTELGAGMYVAMKDLEIRGAGNL 1156

Query: 634  LGIKQSGMPKFLIAQPEL 651
            LG +QSG    +     +
Sbjct: 1157 LGGEQSGHIAGVGFDLYV 1174


>gi|320450396|ref|YP_004202492.1| transcription-repair coupling factor [Thermus scotoductus SA-01]
 gi|320150565|gb|ADW21943.1| transcription-repair coupling factor [Thermus scotoductus SA-01]
          Length = 980

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 147/484 (30%), Positives = 242/484 (50%), Gaps = 18/484 (3%)

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKK 249
            L  +  P +        +P +       EW     +     E LA ++ +L  ++  K 
Sbjct: 364 YLPVEQLPLLRRHPGTTDDPPELSSLGKGEWQRLKEKARKDVEELAARLLILQAKR--KA 421

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
             G       +    I R  P   T  Q+ A++++L+D+     M R++ GDVG GKT +
Sbjct: 422 TPGRAFPPLPEWDPLIERGFPHELTPDQKQALEEVLRDLEAPFPMDRLISGDVGFGKTEI 481

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           AL A    V  G Q   + P  +LA+QH +  ++      + + +++   P+   +  LE
Sbjct: 482 ALRAAHRVVGHGAQVAFLVPTTLLAEQHGKTFRERFAGLPVRIGVLSRFTPEKEEKSILE 541

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +  G   I+IGTH L Q  +++  L L+IVDE+HRFGV Q+ ++ +       L ++AT
Sbjct: 542 GLEKGTLDIVIGTHRLLQPDVRFKDLGLLIVDEEHRFGVAQKERIRELKAEVDTLYLSAT 601

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL    +G  D+S I   P GRKPI+T + P + +  V E +   L  G K +++ 
Sbjct: 602 PIPRTLYSALVGLKDLSSIKTPPPGRKPIRTFLAPFDPL-LVREAILFELERGGKVFYVH 660

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            ++   +            +L     + I ++HG+M +   E  M  F  G   +L+ATT
Sbjct: 661 DRVASIEARRRY-----LENLVPE--ARIGVVHGQMPEGLVEETMLLFAEGAYDVLLATT 713

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +IE G+DV +A+ I+IE A+  GLA L+QLRGRVGR E+ +   L + P L++ +  RL+
Sbjct: 714 IIESGLDVGEANTILIERADRLGLATLYQLRGRVGRREQEAYAYLFHPPRLTEAAEKRLN 773

Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            + +  D   G L+AE+D++ R  G +LG +Q G         E++  LLE A +  K  
Sbjct: 774 AIADLSDLGSGHLLAEKDMEIRGVGNLLGPEQHGHI--RALSLEVYSELLEEAIRKLKGE 831

Query: 667 LTQD 670
             ++
Sbjct: 832 AKEE 835


>gi|86357714|ref|YP_469606.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
            CFN 42]
 gi|86281816|gb|ABC90879.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
            CFN 42]
          Length = 1167

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 136/459 (29%), Positives = 231/459 (50%), Gaps = 21/459 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +     +A  L+R   +        +     +  +     P+  T
Sbjct: 566  DKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLTRHAPVLTTPDGLYDEFAARFPYDET 625

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q++AI+ +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA
Sbjct: 626  EDQDNAIEAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAVVVPTTLLA 685

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++   +  +   + V+  +  +         + +A G+  I++GTHAL    I++  
Sbjct: 686  RQHFKTFSERFRGLPVRVQQASRLVGAKDLALTKKEVADGKTDIVVGTHALLGAGIKFAN 745

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 746  LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVD 805

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G +++++CP++ +          +    L    
Sbjct: 806  RMAVRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLADLA--------DVHAFLQSDV 856

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I+  A+ FGL
Sbjct: 857  PELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGL 916

Query: 574  AQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  
Sbjct: 917  AQLYQLRGRVGRS-KVRAFALFTLPVNKVLTATAERRLKVLQSLDTLGAGFQLASHDLDI 975

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            R  G +LG +QSG         EL+  +LE A  + K +
Sbjct: 976  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEAVAEVKGV 1012


>gi|282890191|ref|ZP_06298721.1| hypothetical protein pah_c014o047 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499848|gb|EFB42137.1| hypothetical protein pah_c014o047 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 1103

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 138/435 (31%), Positives = 208/435 (47%), Gaps = 16/435 (3%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
                  W              A  +  L   +  K  +  P   +    Q    + P+ 
Sbjct: 521 HTLGSARWKKTKERTQEAIVGYAKDLLQLYAHRSLKAGLIYP--SDSIDMQDFEEDFPYE 578

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIG 331
            T+ Q +AI  I +DM     M R++ GDVG GKT VA+ A   AV  G  Q  ++ P  
Sbjct: 579 ETEDQLNAIASIKEDMQSTKSMDRLICGDVGYGKTEVAMRAAFKAVMDGHKQVALLVPTT 638

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LA QHYE   +   N  + + +++        R+ LE++A G   I+IGTH L    + 
Sbjct: 639 VLAMQHYENFIERMSNFPVRIGVLSRFRTPKEIRETLEQVAKGSIDILIGTHRLISKDVV 698

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           ++ L L+I+DE+HRFGV+ +  L +       + ++ATPIPRTL ++ +G  D+S I   
Sbjct: 699 FHDLGLIIIDEEHRFGVKAKEHLKKIKMGVDCITLSATPIPRTLYMSLVGARDMSVINTP 758

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R PI T+I     +      L   LS   +AY I  ++E       +        L 
Sbjct: 759 PQDRLPITTIISEPGDL-VFKNALLRELSRDGQAYVIHNRVETIFGVASK-----IKELL 812

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               + + + HG+MS  + +SV  +FK+G   +L+ATT+IE GID+ +A+ I+I  A+ F
Sbjct: 813 P--QARVVVGHGQMSADEIDSVFHAFKSGAADILVATTIIESGIDIPNANTILINRADQF 870

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKN---TEDGFLIAEEDLK 626
           GLA L+QLRGRVGR    +    L      L + +  RL  L        G  +A  DL+
Sbjct: 871 GLADLYQLRGRVGRWNRRAYAYFLVPNLKSLPQLARKRLHALAEACGYGGGMKLAMHDLE 930

Query: 627 QRKEGEILGIKQSGM 641
            R  G ILG +QSG 
Sbjct: 931 IRGAGNILGTEQSGH 945


>gi|311087188|gb|ADP67268.1| transcription-repair coupling factor [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 812

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 150/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +        A Q+  +  +++ K   G       +       +  F  T  Q 
Sbjct: 214 DWNKEKHKISKTVYDHAAQLLHIYAKRESK--TGFAFKKNIEKYDLFCNDCSFKTTSDQN 271

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +K +L+DMS+   M R++ GDVG GKT +A+ A   AV    Q  I+ P  +LAQQHY
Sbjct: 272 EVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQHY 331

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +  K    N  + + I++    Q  +    +   +G+ +IIIGTH L   +I++  L L+
Sbjct: 332 KNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLGLL 391

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV  +  + +  +   +L +TATPIPRTL +   G  D+S I + PA R  I
Sbjct: 392 IIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRLAI 451

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           KT I   + I  + + +   +S G + Y+I  +++     N  ++ ER + L     +SI
Sbjct: 452 KTFIQEYSPI-LIRKTILREISRGGQVYYIYNKVQ-----NIMNIAERLSILIPE--ASI 503

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I HG+M +ID + VM+ F N    +LI TT+IE G+D+  A+ IIIEN++HFGL+QLHQ
Sbjct: 504 KIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLSQLHQ 563

Query: 579 LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGR+GR    +  +LL +    ++ ++  RL  + + ++   GF ++ +DL+ R  GEI
Sbjct: 564 LRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRGVGEI 623

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG +QSG  K +     +   LL+ A    K
Sbjct: 624 LGKEQSGHIKNIGFSLYMD--LLKNAIDLLK 652


>gi|311086031|gb|ADP66113.1| transcription-repair coupling factor [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086605|gb|ADP66686.1| transcription-repair coupling factor [Buchnera aphidicola str.
           TLW03 (Acyrthosiphon pisum)]
          Length = 760

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 150/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +        A Q+  +  +++ K   G       +       +  F  T  Q 
Sbjct: 162 DWNKEKHKISKTVYDHAAQLLHIYAKRESK--TGFAFKKNIEKYDLFCNDCSFKTTSDQN 219

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +K +L+DMS+   M R++ GDVG GKT +A+ A   AV    Q  I+ P  +LAQQHY
Sbjct: 220 EVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQHY 279

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +  K    N  + + I++    Q  +    +   +G+ +IIIGTH L   +I++  L L+
Sbjct: 280 KNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLGLL 339

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV  +  + +  +   +L +TATPIPRTL +   G  D+S I + PA R  I
Sbjct: 340 IIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRLAI 399

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           KT I   + I  + + +   +S G + Y+I  +++     N  ++ ER + L     +SI
Sbjct: 400 KTFIQEYSPI-LIRKTILREISRGGQVYYIYNKVQ-----NIMNIAERLSILIPE--ASI 451

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I HG+M +ID + VM+ F N    +LI TT+IE G+D+  A+ IIIEN++HFGL+QLHQ
Sbjct: 452 KIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLSQLHQ 511

Query: 579 LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGR+GR    +  +LL +    ++ ++  RL  + + ++   GF ++ +DL+ R  GEI
Sbjct: 512 LRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRGVGEI 571

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG +QSG  K +     +   LL+ A    K
Sbjct: 572 LGKEQSGHIKNIGFSLYMD--LLKNAIDLLK 600


>gi|332295132|ref|YP_004437055.1| transcription-repair coupling factor [Thermodesulfobium narugense
           DSM 14796]
 gi|332178235|gb|AEE13924.1| transcription-repair coupling factor [Thermodesulfobium narugense
           DSM 14796]
          Length = 1111

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 144/483 (29%), Positives = 246/483 (50%), Gaps = 22/483 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ-KILRNIPFS 272
             +  +WTS  +    + E +A +I  +   ++  +      +    I + ++  +  + 
Sbjct: 525 SLRSNDWTSKKKRAKDFAEKIAHEIVFIEASRRNVQRPIYSNSKNPTIEELELKESFGYE 584

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  QE AI+D+  DMS+   M R++  D G GKT +A+ A   AV A  Q  ++AP  +
Sbjct: 585 ETPDQERAIEDVFIDMSKPYPMDRLIVADAGFGKTEIAIRAAYRAVLASRQVALLAPTTL 644

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA QHY   K       + VE+++      ++ K LE +   +  IIIGTH+L    I++
Sbjct: 645 LADQHYRTFKNRFDPLGVRVEVLSRISRSGNKNKILEDLKENKIDIIIGTHSLLSKGIKF 704

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             L L+I+DE+ +FGV Q+ +  +  T   VL ++ATPIPRTL +   G  DIS I   P
Sbjct: 705 KNLGLLIIDEEQKFGVMQKEQFKKLRTELDVLSLSATPIPRTLNMALSGLRDISTIFTPP 764

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             R PI+T++ P      V E +   L  G + + +  +I     SN  ++ E+  S+  
Sbjct: 765 KNRMPIRTIVSPFKDT-IVREAILRELDRGGQIFVVDARI-----SNLNNLKEKIESIVG 818

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +   S A++HG+ S  +  + ++ F N    LLI+T ++E G+D+ + + III NA+ FG
Sbjct: 819 NV--SCAVLHGQKSPQEISTTLERFLNKEIDLLISTAILESGLDIPEVNTIIINNADLFG 876

Query: 573 LAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
           L++L+QLRGRVGR  +      LY     +++++  RL  ++       GF I+ +D++ 
Sbjct: 877 LSELYQLRGRVGRSFKQGYAYFLYSSDKKITEDAKRRLQTIQMNSALVSGFNISLKDMEI 936

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
           R  G +LG +Q G  + +    EL   ++    ++   I     + T VR +   I LY+
Sbjct: 937 RGTGNVLGTEQHGHMENI--GVELFTEMIA---EELARIKGTAKEFTRVRAE---IELYI 988

Query: 688 YQY 690
            + 
Sbjct: 989 DKN 991


>gi|325067341|ref|ZP_08126014.1| transcription-repair coupling factor [Actinomyces oris K20]
          Length = 619

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 132/456 (28%), Positives = 220/456 (48%), Gaps = 17/456 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +       +AG++  L   +      G   + +     ++    P++ T  Q 
Sbjct: 93  DWAKTKSKARKAVREIAGELVRLYAARAA--TTGHAFSPDTPWQTELEEAFPYTETPDQL 150

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           S I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L  QH 
Sbjct: 151 STIDEVKADMEKAQPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVSQHA 210

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E   +      + V  ++     A   K LE +  G   +++GTH L    +++  L LV
Sbjct: 211 ETFTERYAGFPVTVGALSRFQDAAESAKVLEGLEKGSVDVVVGTHRLITGQVKFKDLGLV 270

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S +   P  R PI
Sbjct: 271 IIDEEQRFGVEHKETLKALRTNVDVLSMSATPIPRTLEMAVTGLREMSTLATPPEDRHPI 330

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            T +       +V   ++  L    + +++  ++E+               L     + +
Sbjct: 331 LTYVGAY-ETKQVSAAIRRELLREGQVFFVHNRVEDIDA-----TAAHLAELVPE--ARV 382

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HG+M++   E+V+DSF      +L+ TT++E G+DV +A+ +I++ A+  GL+QLHQ
Sbjct: 383 ATAHGQMNEHQLEAVIDSFWRKETDVLVCTTIVETGLDVSNANTLIVDRADRMGLSQLHQ 442

Query: 579 LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGRVGRG E +    LY    PL++ +  RL  +    D   G  +A +DL+ R  G +
Sbjct: 443 LRGRVGRGRERAYAYFLYPSDKPLTETALERLRTIATNTDLGAGMQVAMKDLEIRGSGNL 502

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           LG +QSG         +L+  ++  A    K  L +
Sbjct: 503 LGGEQSGHI--AGVGFDLYVRMVSEAVAAYKKALAR 536


>gi|72160828|ref|YP_288485.1| transcription-repair coupling factor [Thermobifida fusca YX]
 gi|71914560|gb|AAZ54462.1| transcription-repair coupling factor [Thermobifida fusca YX]
          Length = 1210

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 137/489 (28%), Positives = 236/489 (48%), Gaps = 35/489 (7%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +AG +  L          G   + +    +++    P+  T  Q 
Sbjct: 606  DWAKAKSRARKAVREIAGDLIRLY--SARHASPGHAFSPDTPWQRELEDAFPYVETPDQL 663

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+++ +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +L QQH 
Sbjct: 664  AAIEEVKRDMEKPVPMDRLICGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLVQQHL 723

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +   +  + V  ++     A   +  E +  G+  ++IGTH L     Q+  L LV
Sbjct: 724  STFTERYASFPVTVRPLSRFQSDAEIERIREGMRTGEVDVVIGTHRLLSPETQFKDLGLV 783

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L +  T   VL M+ATPIPRTL +   G  +++ I   P  R P+
Sbjct: 784  IIDEEQRFGVEHKEALKRLRTQVDVLSMSATPIPRTLEMGLTGIREMTTILTPPEERHPV 843

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TS 516
             T + P +   ++   ++  L    + +++  ++         + +ER  +        +
Sbjct: 844  LTFVGPYDE-KQIAAAIRRELMREGQVFFVHNRV---------ASIERAAATVSRLVPEA 893

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             +A  HG+M++   E VM  F      +L+ TT++E G+DV +A+ +I++ A+ +GLAQL
Sbjct: 894  RVAWAHGQMNEHQLERVMVDFWEKKFDVLVCTTIVESGLDVPNANTLIVDRADTYGLAQL 953

Query: 577  HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGRG E +    LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G
Sbjct: 954  HQLRGRVGRGRERAYAYFLYPPDKPLTETAHERLATVAQHTESGAGMYVAMKDLEIRGAG 1013

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKD------AKHILTQDPDL--------TSVR 677
             ILG +QSG         +L+  ++  A ++      A   +    +L          V 
Sbjct: 1014 NILGTEQSG--SIAGVGFDLYVRMVGEAVRELKGDQSAAQEVETKVELPINAHIPHDYVP 1071

Query: 678  GQSIRILLY 686
            G+ +R+  Y
Sbjct: 1072 GERLRLEAY 1080


>gi|15616905|ref|NP_240118.1| transcription-repair coupling factor [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|14194918|sp|P57381|MFD_BUCAI RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|25403587|pir||D84964 transcription-repair coupling factor [imported] - Buchnera sp.
           (strain APS)
 gi|10038969|dbj|BAB13004.1| transcription-repair coupling factor [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 812

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 150/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +        A Q+  +  +++ K   G       +       +  F  T  Q 
Sbjct: 214 DWNKEKHKISKTVYDHAAQLLHIYAKRESK--TGFAFKKNIEKYDLFCNDCSFKTTSDQN 271

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +K +L+DMS+   M R++ GDVG GKT +A+ A   AV    Q  I+ P  +LAQQHY
Sbjct: 272 EVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQHY 331

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +  K    N  + + I++    Q  +    +   +G+ +IIIGTH L   +I++  L L+
Sbjct: 332 KNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLGLL 391

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV  +  + +  +   +L +TATPIPRTL +   G  D+S I + PA R  I
Sbjct: 392 IIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRLAI 451

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           KT I   + I  + + +   +S G + Y+I  +++     N  ++ ER + L     +SI
Sbjct: 452 KTFIQEYSPI-LIRKTILREISRGGQVYYIYNKVQ-----NIMNIAERLSILIPE--ASI 503

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I HG+M +ID + VM+ F N    +LI TT+IE G+D+  A+ IIIEN++HFGL+QLHQ
Sbjct: 504 KIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLSQLHQ 563

Query: 579 LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGR+GR    +  +LL +    ++ ++  RL  + + ++   GF ++ +DL+ R  GEI
Sbjct: 564 LRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRGVGEI 623

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG +QSG  K +     +   LL+ A    K
Sbjct: 624 LGKEQSGHIKNIGFSLYMD--LLKNAIDLLK 652


>gi|260885484|ref|ZP_05735117.2| transcription-repair coupling factor [Prevotella tannerae ATCC
           51259]
 gi|260852468|gb|EEX72337.1| transcription-repair coupling factor [Prevotella tannerae ATCC
           51259]
          Length = 1143

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 130/450 (28%), Positives = 223/450 (49%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q K+E G   + +  + Q++  +  +  T  Q  
Sbjct: 533 WEKMKDRTKKKIKDIARNLIKLY--SQRKEEKGYAFSADSFLQQELEASFTYEDTPDQLK 590

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
             +++  DM     M R++ GDVG GKT +A+ A   A     Q  ++ P  +LA QHY 
Sbjct: 591 VTQEVKADMESLRPMDRLVCGDVGFGKTEIAVRAALKAAVDNKQVAVLVPTTVLALQHYR 650

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +  +   + V  ++        +  L  +A G  +II+GTH L   ++++  L L+I
Sbjct: 651 TFAERLKGFPVRVAYLSRAKSAKETKSILHDLAEGHINIIVGTHKLIGKTVRFQDLGLLI 710

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + +L +       L M+ATPIPRTL  + +G  D+S I   P  R+PI+
Sbjct: 711 IDEEQKFGVAVKERLRELKVNVDTLTMSATPIPRTLQFSLMGARDLSVIQTPPPNRRPIQ 770

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T I   N  + + E +   +S   + + +  ++      + +++VE++        + + 
Sbjct: 771 TEIHTFNH-EIIAEAVNFEMSRNGQVFIVTNRVASL--GSLKALVEKY-----VPDARVV 822

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M+  + E ++  F N    +LI+TT++E GID+ +A+ I+I+ A  FGL+ LHQ+
Sbjct: 823 VGHGQMAPAELEKIILDFVNYDYDVLISTTIVENGIDIPNANTILIDAAHTFGLSDLHQM 882

Query: 580 RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR  + + C LL  P   L  ++  RL  ++   D   G  IA +DL  R  G +L
Sbjct: 883 RGRVGRSSQKAFCYLLAPPLSILKDDARRRLQAIEEFSDLGSGIHIAMQDLDIRGAGNLL 942

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E +  +L  A  + K
Sbjct: 943 GAEQSGFIADL--GYETYQKILAEAVSELK 970


>gi|260463949|ref|ZP_05812145.1| transcription-repair coupling factor [Mesorhizobium opportunistum
            WSM2075]
 gi|259030324|gb|EEW31604.1| transcription-repair coupling factor [Mesorhizobium opportunistum
            WSM2075]
          Length = 1165

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 139/458 (30%), Positives = 227/458 (49%), Gaps = 21/458 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +     +A  L+R   + +      +     +  +     P+  T
Sbjct: 561  DKLGGGAWQSRKAKLKKRLLDMAGQLIRIAAERQMRAAPALVPAEGLYDEFSARFPYEET 620

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q++AI  +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P  +L+
Sbjct: 621  DDQQTAIDSVRDDLGAGKPMDRLICGDVGFGKTEVALRAAFIAAMEGFQVAVVVPTTLLS 680

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++   +      I V   +  +      +  + IA GQ  I+IGTHAL   +I +  
Sbjct: 681  RQHFKTFSQRFSGLPIRVAQASRLVGAKELAETKKGIAEGQVDIVIGTHALLGSAISFKN 740

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L    T  HVL ++ATPIPRTL L   G  ++S I   P  
Sbjct: 741  LGLLIIDEEQHFGVKHKERLKDLKTDVHVLTLSATPIPRTLQLALTGVRELSLIATPPVD 800

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G  ++++ P+I +          E  + L E  
Sbjct: 801  RMAVRTFISPFDPL-VIRETLLRERYRGGHSFYVVPRISDLA--------EIHDFLRESV 851

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M   + + +M++F +G   +L++TT++E G+D+  A+ +II  A+ FGL
Sbjct: 852  PELKVAVAHGQMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTLIIHRADMFGL 911

Query: 574  AQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            +QL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  
Sbjct: 912  SQLYQLRGRVGRS-KVRAYALFTLPANRKLTDTAERRLKVLQSLDTLGAGFQLASHDLDI 970

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R  G +LG +QSG         EL+  +LE A  + K 
Sbjct: 971  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEAVAEVKD 1006


>gi|295396690|ref|ZP_06806836.1| transcription-repair coupling factor [Brevibacterium mcbrellneri ATCC
            49030]
 gi|294970436|gb|EFG46365.1| transcription-repair coupling factor [Brevibacterium mcbrellneri ATCC
            49030]
          Length = 1202

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 133/487 (27%), Positives = 235/487 (48%), Gaps = 28/487 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    +      + +AG++  L          G   + +    +++     +  T  Q 
Sbjct: 581  DWAKTKQRARKAVKEIAGELVRLY--SARMASKGFQFSPDTPWQRELEDAFRYVETADQL 638

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++ +DM +   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 639  TTIDEVKEDMEKPLPMDRLICGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 698

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  ++      + V  ++        ++  + I  G+  ++IGTH L    +++  L LV
Sbjct: 699  ETFRERYAGFPVTVGRLSRFQTPKESQQTKDDIHSGKLDVVIGTHRLLSGEVRFKNLGLV 758

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 759  IIDEEQRFGVEHKETLKAMRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPV 818

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L    + ++I  ++++           R   L     + I
Sbjct: 819  LTYVGKYEE-KQVTAAIRRELLREGQVFFIHNRVQDIDAVAT-----RLAELVPE--ARI 870

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+MS+   E V+  F      +L+ TT++E GID+ +A+ +I++ A+  GL+QLHQ
Sbjct: 871  AVAHGKMSEQQLEKVIVDFWEKQYDVLVCTTIVETGIDIANANTLIVDRADRMGLSQLHQ 930

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY     L++ ++ RL  +    +   G  +A +DL+ R  G +
Sbjct: 931  LRGRVGRGRERAYAYFLYPSDIELTETAHDRLETVAAHTELGAGMQVAMKDLEIRGAGNL 990

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA----RKDAKHILTQ-------DPDLTSVRGQSIR 682
            LG +QSG  +      +L+  ++  A    + +A+  L +       D  L +   +  R
Sbjct: 991  LGGQQSGHVE--GVGFDLYVRMVGEAVANFKGEAEEELPEMRIELPIDAHLPTNYIEQER 1048

Query: 683  ILLYLYQ 689
            + L  Y+
Sbjct: 1049 LRLEAYR 1055


>gi|311087715|gb|ADP67794.1| transcription-repair coupling factor [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 760

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 150/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +        A Q+  +  +++ K   G       +       +  F  T  Q 
Sbjct: 162 DWNKEKHKISKTVYDHAAQLLHIYAKRESK--TGFAFKKNIEKYDLFCNDCSFKTTSDQN 219

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +K +L+DMS+   M R++ GDVG GKT +A+ A   AV    Q  I+ P  +LAQQHY
Sbjct: 220 EVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQHY 279

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +  K    N  + + I++    Q  +    +   +G+ +IIIGTH L   +I++  L L+
Sbjct: 280 KNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLGLL 339

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV  +  + +  +   +L +TATPIPRTL +   G  D+S I + PA R  I
Sbjct: 340 IIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRLAI 399

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           KT I   + I  + + +   +S G + Y+I  +++     N  ++ ER + L     +SI
Sbjct: 400 KTFIQEYSPI-LIRKTILREISRGGQVYYIYNKVQ-----NIMNIAERLSILIPE--ASI 451

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I HG+M +ID + VM+ F N    +LI TT+IE G+D+  A+ IIIEN++HFGL+QLHQ
Sbjct: 452 KIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLSQLHQ 511

Query: 579 LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGR+GR    +  +LL +    ++ ++  RL  + + ++   GF ++ +DL+ R  GEI
Sbjct: 512 LRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRGVGEI 571

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG +QSG  K +     +   LL+ A    K
Sbjct: 572 LGKEQSGHIKNIGFSLYMD--LLKNAIDLLK 600


>gi|46447155|ref|YP_008520.1| transcription-repair coupling factor [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400796|emb|CAF24245.1| probable transcription-repair coupling factor mfd [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 1101

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 145/448 (32%), Positives = 231/448 (51%), Gaps = 20/448 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +S  ++   + E      A  L++   + + + G    ++    Q      PFS T+ Q
Sbjct: 527 GSSKWKKTKEHTERAILGYASDLLKSYAEREIKEGFAYPIDSADLQSFEGEFPFSETEDQ 586

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPIGILAQQ 336
            +AI  I QDM  K  M R++ GDVG GKT VA+ A   AV  G  Q  ++ P  +LA Q
Sbjct: 587 LAAISSIKQDMMSKKAMDRLICGDVGYGKTEVAMRAAFKAVTDGAKQVAVLVPTTVLAMQ 646

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H++       N  I + I++    Q   ++ LE IA+G   I+IGTH +  + +++  L 
Sbjct: 647 HFDNFLDRMANFPINIGILSRFRTQKQIQETLEGIANGFIDIVIGTHRIIGEDVKFKDLG 706

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI+DE+ RFGV+ +  L +       L ++ATPIPRTL ++ +G  D+S I   P  R 
Sbjct: 707 LVIIDEEQRFGVKAKEHLKKIKIGVDCLTLSATPIPRTLYMSLIGARDMSVINTPPQDRL 766

Query: 457 PIKTVIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           P KT+I   +  D++I+      LS   +A+ I  ++E        SV  R  SL     
Sbjct: 767 PTKTIITEPS--DQIIQNALLRELSRDGQAFVIHNRVESIY-----SVSNRIKSLLP--Q 817

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + + + HG+M   + ++   +FK+G   +L+ATT++E G+D+ +A+ I+I+ A+HFGLA 
Sbjct: 818 ARVLVAHGQMHADEIDATFHAFKSGQADILVATTIVENGVDIPNANTILIDRADHFGLAA 877

Query: 576 LHQLRGRVGRGEEISSCILLYH-----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           L+QLRGRVGR    +    L       P L++     LS       G  +A  DL+ R  
Sbjct: 878 LYQLRGRVGRWNRRAYAYFLVPNLRVMPELTRKRLQALSEASGYGSGMKVAMRDLEIRGA 937

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEI 658
           G+ILG++QSG    +     L+  +L+ 
Sbjct: 938 GDILGLEQSGHVSSI--GFHLYCKMLKR 963


>gi|15806542|ref|NP_295255.1| transcription-repair coupling factor [Deinococcus radiodurans R1]
 gi|6459293|gb|AAF11095.1|AE001997_1 transcription-repair coupling factor [Deinococcus radiodurans R1]
          Length = 1054

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 146/491 (29%), Positives = 246/491 (50%), Gaps = 36/491 (7%)

Query: 197 KSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
           +  P +        +P +   F+      +  + R   +E+ A  +     R+      G
Sbjct: 422 EQLPILRRHPGTTDDPPQLSSFDKKDWARAKEKARKNAEEVAAKLLVQYAARQ---VTPG 478

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
              + + +  +++ +N  F  TK Q +A+K+ ++D+ +     R++ GDVG GKT VAL 
Sbjct: 479 NAFDPQPEWDEQVEKNFEFELTKDQVTALKETMRDLEKPTPADRLISGDVGFGKTEVALR 538

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           A    V  G Q  ++ P  +LA+QH     +  +   + VE ++        R  L  + 
Sbjct: 539 AAHRVVGHGKQVAVLVPTTLLAEQHTATFVERFKGLPVRVEGLSRFTTDKQARNILAELK 598

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-------------- 418
            G+  I+IGTH L    I++  L L+IVDE+HRFGV Q+ KL Q                
Sbjct: 599 AGRVDILIGTHRLLSGDIEFKDLGLIIVDEEHRFGVGQKEKLRQLRGLPEMVDGKLTMTG 658

Query: 419 --TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
              A   L ++ATPIPRTL ++ +G  D+S I   P GR+PI+T++ P + +  V + + 
Sbjct: 659 DEKAVDTLALSATPIPRTLYMSMVGLRDMSSIQTPPKGRRPIQTILSPFDPL-TVRDAIM 717

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             +  G K ++I  +I      +         +L     + I + HGRM++ + E +M  
Sbjct: 718 TEIGRGGKVFYIHDRIASIGARSLY-----LRNLVPE--ARIGVAHGRMNEEELEEIMLG 770

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G   +L+ATT++E G+D+ +A+ I+IE ++  GLAQL+QLRGRVGR  + +   L Y
Sbjct: 771 FEQGAFDVLLATTIVETGLDIPEANTILIERSDRLGLAQLYQLRGRVGRRAQTAYAYLFY 830

Query: 597 HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
            P +++N+  RL  + + +D   G L+AE+D++ R  G ILG +Q G         +++ 
Sbjct: 831 PPRMTENAQRRLWAIADLQDLGSGHLLAEKDMEIRGVGNILGEEQHGH--VQAVSIDVYT 888

Query: 654 SLLEIARKDAK 664
            LL  A    K
Sbjct: 889 ELLAEAVAKLK 899


>gi|227497779|ref|ZP_03927965.1| transcription-repair coupling factor [Actinomyces urogenitalis DSM
            15434]
 gi|226832806|gb|EEH65189.1| transcription-repair coupling factor [Actinomyces urogenitalis DSM
            15434]
          Length = 1250

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 131/459 (28%), Positives = 224/459 (48%), Gaps = 17/459 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +       +AG++  L   +      G     +     ++  + P++ T  Q 
Sbjct: 625  DWAKTKSKARKAVREIAGELVRLYAARSA--TSGHAFAPDTPWQSELEESFPYTETADQL 682

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L  QH 
Sbjct: 683  ATIDEVKSDMEKAQPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVSQHA 742

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +      + V  ++     +   + L+ +A G   ++IGTH L    +++  L LV
Sbjct: 743  ETFTERYAGFPVRVAQLSRFQSASQSEEVLKGLASGAIDVVIGTHRLITGQVRFKDLGLV 802

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S +   P  R PI
Sbjct: 803  IIDEEQRFGVEHKETLKALRTDVDVLSMSATPIPRTLEMAVTGLREMSTLATPPEDRHPI 862

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L    + +++  ++E+        V  R   +     + +
Sbjct: 863  LTYVGAY-ETKQVSAAIRRELLRDGQVFYVHNRVEDID-----RVAARIQEMVPE--ARV 914

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M ++  E V+D F +    +L+ TT++E G+DV +A+ +I++ A+  GL+QLHQ
Sbjct: 915  ATAHGQMGEVRLEQVIDDFWHKEIDVLVCTTIVETGLDVSNANTLIVDRADRMGLSQLHQ 974

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY    PL++ +  RL  +    D   G  +A +DL+ R  G +
Sbjct: 975  LRGRVGRGRERAYAYFLYPADKPLTETALERLRTIATNTDLGAGMQVAMKDLEIRGAGNL 1034

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            LG +QSG         +L+  ++  A    K  L  +P+
Sbjct: 1035 LGGEQSGHI--AGVGFDLYVRMVSEAVAAYKKALKINPE 1071


>gi|146277540|ref|YP_001167699.1| transcription-repair coupling factor [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555781|gb|ABP70394.1| transcription-repair coupling factor [Rhodobacter sphaeroides ATCC
           17025]
          Length = 1163

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 136/463 (29%), Positives = 228/463 (49%), Gaps = 19/463 (4%)

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKI 261
           E  +   +     D       + + A  +    +IA  LMR   +        +     +
Sbjct: 534 ELLSRYGHEEGLIDKLGGGAWQAKKARLKERIREIAERLMRIAAERHLRHAPILEAPHSL 593

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            +      P+  T  Q SAI D+++D+   + M R++ GDVG GKT VA+ A   A  AG
Sbjct: 594 WEAFSARFPYQETDDQLSAIADVIKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAALAG 653

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++ P  +LA+QH+    +  +   + V  ++  +      +    +A G   I IG
Sbjct: 654 MQVAVICPTTLLARQHFRSFSERFRGFPMKVRQLSRFVSAREAAETRAGLADGTVDICIG 713

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           THAL    ++   L L+I+DE+  FGV  + +L +  +  HVL +TATPIPRTL L+  G
Sbjct: 714 THALLAKGVKLKSLGLLIIDEEQHFGVSHKERLKEMRSEVHVLTLTATPIPRTLQLSLTG 773

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D+S I   P  R  I+T +   + +  + E L      G +++++ P++ +  +    
Sbjct: 774 VRDLSIIATPPVDRLAIRTYVSEFDTV-TIREALLRERYRGGQSFFVVPRLSDLPDME-- 830

Query: 502 SVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
                   L EH    +  + HG+++  D +  M++F +G   +L+ATT++E G+D+  A
Sbjct: 831 ------AFLREHVPEVTYVVAHGQLAAGDLDERMNAFYDGKFDVLLATTIVESGLDIPTA 884

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED-- 616
           + +I+  A+ FGL+QL+Q+RGRVGR +  + C L   P  PL+  +  RL +L + +   
Sbjct: 885 NTMIVHRADMFGLSQLYQIRGRVGRAKTRAYCYLTTKPRAPLTPQAIKRLRLLASLDSLG 944

Query: 617 -GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            GF +A  DL  R  G +LG +QSG         EL+  +LE 
Sbjct: 945 AGFNLASHDLDLRGAGNLLGEEQSGHI--KEVGYELYQQMLEE 985


>gi|183601453|ref|ZP_02962823.1| transcription-repair coupling factor [Bifidobacterium animalis subsp.
            lactis HN019]
 gi|241191047|ref|YP_002968441.1| transcription-repair coupling factor [Bifidobacterium animalis subsp.
            lactis Bl-04]
 gi|241196453|ref|YP_002970008.1| transcription-repair coupling factor [Bifidobacterium animalis subsp.
            lactis DSM 10140]
 gi|183219059|gb|EDT89700.1| transcription-repair coupling factor [Bifidobacterium animalis subsp.
            lactis HN019]
 gi|240249439|gb|ACS46379.1| transcription-repair coupling factor [Bifidobacterium animalis subsp.
            lactis Bl-04]
 gi|240251007|gb|ACS47946.1| transcription-repair coupling factor [Bifidobacterium animalis subsp.
            lactis DSM 10140]
 gi|295794036|gb|ADG33571.1| transcription-repair coupling factor [Bifidobacterium animalis subsp.
            lactis V9]
          Length = 1194

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 133/470 (28%), Positives = 232/470 (49%), Gaps = 22/470 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 593  DWAQTKAKAKKHVHEIAQNLIRLYSARQRA--KGFAFSKDTPWQKELEDAFPYQETADQL 650

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+  DM +   M R++ GDVG GKT +A+ A   AV+   Q  ++ P  +L QQH 
Sbjct: 651  TTIDDVKADMEKPIPMDRLICGDVGFGKTEIAIRAAFKAVQDSKQVAVLVPTTLLVQQHL 710

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +  +   + V  ++         + ++ +A G   ++IGTH L    I++  L LV
Sbjct: 711  QTFTERFEGFPVNVRAMSRFQSTKEINETIKGLADGTVDVVIGTHKLLNPKIKFKDLGLV 770

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 771  IIDEEQRFGVEAKETLKAVRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 830

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + ++I  ++E  +E       +R   L     + I
Sbjct: 831  LTYVGAYED-AQVTAAIRRELLRGGQVFYIHNRVEGIEE-----KAKRLQDLVPE--ARI 882

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M     + ++  F +    +L+ TT++E G+D+ +A+ +I++ A+ FGL+QLHQ
Sbjct: 883  GIAHGKMGRKQLDQIIRDFWHRDIDVLLCTTIVETGLDISNANTLIVDRADRFGLSQLHQ 942

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG + +    LY P  P+++ S+ RL  +        GF +A +DL+ R  G +
Sbjct: 943  LRGRVGRGRDRAYAYFLYDPSKPMTEQSHERLVTIAQNTALGSGFDVAMKDLELRGTGNL 1002

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            LG +QSG  +      +L+  ++  A +D K     DP+ T     +I +
Sbjct: 1003 LGDEQSGHIE--GVGFDLYVRMVSEAIEDYK-----DPERTEPVAVTIDL 1045


>gi|121602625|ref|YP_989090.1| transcription-repair coupling factor [Bartonella bacilliformis KC583]
 gi|120614802|gb|ABM45403.1| transcription-repair coupling factor [Bartonella bacilliformis KC583]
          Length = 1163

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 132/452 (29%), Positives = 227/452 (50%), Gaps = 19/452 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W +       +   +AGQ+  +   +  +      +     +  + +   P+  T+ Q S
Sbjct: 569  WQARKTRFKKHLLQIAGQLICIAAERAMRSAPI--LTPPVSLFDEFVARFPYEETEDQMS 626

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L D+     M R++ GDVG GKT VA+ +   A   G Q  ++ P  +L++QHY+
Sbjct: 627  AIDAVLDDLEAGKPMDRLICGDVGFGKTEVAIRSAFVAALNGYQTAVVVPTTLLSRQHYK 686

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  Q   + +  ++  +  A   K  + I+ G   I++GTHAL   S+ + +L L+I
Sbjct: 687  TFIARFQGLPVKIGHVSRLVKAAELTKVKKGISDGTIDIVVGTHALLSGSVNFSRLGLLI 746

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+  FGV+ +  L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++
Sbjct: 747  IDEEQHFGVKHKEHLKELKSDIHVLTLSATPIPRTLGLALSGVRELSLITTPPIDRMAVR 806

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T I P + +  + E L      G +++++CP+I +               L +H      
Sbjct: 807  TFISPFDAL-VIRETLLREYYRGGQSFYVCPRISDLSYVE--------EYLKKHVPELKF 857

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M     + +M++F +G   +L++TT+IE G+D+  A+ +I+  AE FGL+ L+Q
Sbjct: 858  VIAHGQMPAGQLDDIMNAFYDGKYDVLLSTTIIESGLDIPTANTLIVHRAEMFGLSALYQ 917

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR ++ +  +  +     L+  +  RL +L++ +    GF +A  D+  R  G  
Sbjct: 918  LRGRVGRSKQRAYALFTFPSNKVLTTAAQRRLKILQSLDTLGAGFQLASHDMDIRGSGNF 977

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG         EL+  +LE A  + K 
Sbjct: 978  LGEEQSGHI--KEVGFELYQKMLEEAVSELKE 1007


>gi|153007315|ref|YP_001381640.1| transcription-repair coupling factor [Anaeromyxobacter sp. Fw109-5]
 gi|152030888|gb|ABS28656.1| transcription-repair coupling factor [Anaeromyxobacter sp. Fw109-5]
          Length = 1229

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 140/452 (30%), Positives = 229/452 (50%), Gaps = 22/452 (4%)

Query: 225  RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
            R+    ++LL     LL +        G       +I ++     P+  T  Q  AI D+
Sbjct: 586  RKARVKEQLLKMAAELLDIYAARAAHPGHAFGEPDEIFREFEAEFPWEETPDQAKAIADV 645

Query: 285  LQDMSQKN-------RMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            L+DM ++         M R++ GDVG GKT VA+ A   AV +  Q  ++ P  +LA QH
Sbjct: 646  LRDMRKQRGGPAAAAPMDRLVCGDVGYGKTEVAMRAAMLAVLSRKQVAVLVPTTVLASQH 705

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
                ++  +   + +E I+        ++ L+ +A G+  +++GTH L    + + +L L
Sbjct: 706  ERTFRERFKGYPVRIEAISRMKSAEEVKQVLKDVAAGKVDVVVGTHRLLAADVSFKELGL 765

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            V+VDE+ RFGV  + +L +      VL +TATPIPRTL ++  G  D+S I   P  R+ 
Sbjct: 766  VVVDEEQRFGVAHKERLKKLRRLVDVLTLTATPIPRTLHMSLAGVRDLSIIATPPEDRRA 825

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            I+T ++  +    V E ++  L  G + Y++  ++                      ++ 
Sbjct: 826  IRTFVMKFD-PQVVRESIETELKRGGQVYFVHNRVRSIAAMQKFLAD-------IVPSAR 877

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            + + HG+M++   E VM  F      +L+AT++IE G+D+  A+ II+  A+HFGLAQL+
Sbjct: 878  VGVAHGQMAEGKLEEVMSRFVRKELDVLLATSIIESGLDIPSANTIIVNRADHFGLAQLY 937

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            Q+RGRVGR  E +   LL     P++K++  RL VL+   +   GF IA  DL+ R  G 
Sbjct: 938  QIRGRVGRSRERAYAYLLVPARRPVTKDAQKRLEVLQRFSELGAGFKIASHDLEIRGAGN 997

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            +LG  QSG  +      EL+  LL+ A ++ K
Sbjct: 998  LLGKDQSGQIE--AVGFELYSELLDEAVRELK 1027


>gi|17989033|ref|NP_541666.1| transcription-repair coupling factor [Brucella melitensis bv. 1 str.
            16M]
 gi|17984874|gb|AAL53930.1| transcription-repair coupling factor [Brucella melitensis bv. 1 str.
            16M]
          Length = 1170

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 135/452 (29%), Positives = 229/452 (50%), Gaps = 21/452 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    +IA  L++   + +      +   G +  +     P+  T
Sbjct: 568  DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQMRGAPVMTPPGGLYAEFAARFPYDET 627

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q +AI+ +  D++Q   M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L+
Sbjct: 628  DDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLS 687

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++          I V   +  +         + +  G   I++GTHAL   SI++  
Sbjct: 688  RQHFKTFSNRFHGLPINVAHASRLVGAKELAATKKGLEEGTVDIVVGTHALLGSSIKFKN 747

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ +  L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 748  LGLLIIDEEQHFGVKHKEWLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 807

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +++++ P+I +  +            L EH 
Sbjct: 808  RMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVVPRIADLTDIE--------EFLKEHV 858

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 859  PELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGL 918

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  +  +  L   P    L++ +  RL VL++ +    GF +A  D+  
Sbjct: 919  AQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDI 977

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G +LG +QSG         EL+  +LE A
Sbjct: 978  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 1007


>gi|84503554|ref|ZP_01001605.1| transcription-repair coupling factor [Oceanicola batsensis
           HTCC2597]
 gi|84388044|gb|EAQ01092.1| transcription-repair coupling factor [Oceanicola batsensis
           HTCC2597]
          Length = 1152

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 144/450 (32%), Positives = 232/450 (51%), Gaps = 17/450 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        +              P+  T
Sbjct: 544 DRLGGGAWQAKKARLKERIREMADRLIRIAAERALRRAPILEPPEGAWDAFQARFPYQET 603

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q +AI+D++ DM   + M R++ GDVG GKT VAL A   A  +G Q  ++AP  +LA
Sbjct: 604 DDQLAAIEDVMTDMLSGHPMDRLICGDVGFGKTEVALRAAFVAAMSGVQVAVIAPTTLLA 663

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY+   +  +   + V  ++  + Q    +  E +A G   I++GTHAL   SI+++ 
Sbjct: 664 RQHYQGFAERFRGFPLQVSPLSRFVSQKEADRTREGLAKGTVDIVVGTHALLAKSIRFHN 723

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+IVDE+ RFGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 724 LGLLIVDEEQRFGVGHKERLKQLKSDVHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPID 783

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P+I +  E       E         
Sbjct: 784 RLAIRTYVSEFDAV-TIREALLRERYRGGQSFYVVPRISDLAEVEEFLKAEV-------P 835

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             S  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ II+  A+ FGLA
Sbjct: 836 EVSYVVAHGQMAAGELDQRMNAFYDGKFDVLLATTIVESGLDIPRANTIIVHRADMFGLA 895

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
           QL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R 
Sbjct: 896 QLYQIRGRVGRAKTRAYAYLTTKPRVRLTPAAEKRLKVLGSLDTLGAGFTLASQDLDIRG 955

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            G +LG +QSG  +      EL+ ++LE A
Sbjct: 956 AGNLLGEEQSGNMRD--VGYELYQTMLEEA 983


>gi|254465368|ref|ZP_05078779.1| transcription-repair coupling factor [Rhodobacterales bacterium
           Y4I]
 gi|206686276|gb|EDZ46758.1| transcription-repair coupling factor [Rhodobacterales bacterium
           Y4I]
          Length = 1151

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 137/450 (30%), Positives = 230/450 (51%), Gaps = 17/450 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        ++      ++     P+  T
Sbjct: 538 DRLGGGAWQAKKAKLKERIREMADKLIRIAAERALRKAPVMDPPPHAWEEFSARFPYQET 597

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI+D+++D+     M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA
Sbjct: 598 DDQLRAIEDVMEDLHSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVVAPTTLLA 657

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH    K   +   + V  ++  +      K  E +  G   I++GTHA+   SI++  
Sbjct: 658 RQHAASFKGRFRGFPLEVRQLSRFVAAKEASKTREGLGKGTVDIVVGTHAVLAKSIKFQN 717

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 718 LGLLIIDEEQHFGVAHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVD 777

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P+I +  E       E   +     
Sbjct: 778 RLAIRTYVSEFDSV-TIREALLREHYRGGQSFYVVPRITDLPEVE-----EFLKAQLPEL 831

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
           T  +A  HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++  A+ FGL+
Sbjct: 832 TYVVA--HGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFGLS 889

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
           QL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R 
Sbjct: 890 QLYQIRGRVGRSKTRAYAYLTTKPRQRLTPAAEKRLRVLGSLDTLGAGFTLASQDLDIRG 949

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            G +LG +QSG  +      EL+ S+LE A
Sbjct: 950 AGNLLGEEQSGQMRD--VGYELYQSMLEEA 977


>gi|327313943|ref|YP_004329380.1| transcription-repair coupling factor [Prevotella denticola F0289]
 gi|326946335|gb|AEA22220.1| transcription-repair coupling factor [Prevotella denticola F0289]
          Length = 1175

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 151/584 (25%), Positives = 269/584 (46%), Gaps = 34/584 (5%)

Query: 100  EITLLFFYRKT---EMLKNVFFEGRKITVTGKIKKLKNRIIMVHP-HYIFHNSQDVNFPL 155
             + + FF          K      +     GK+      +  + P  ++ H   D     
Sbjct: 440  TLKVCFFTDHQIFDRFHKYNLKSDKARQ--GKMALTMKELQEMEPGDFLVHV--DFGIGK 495

Query: 156  IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
               +  +P G S     +++ +    + V    + K  + K       E           
Sbjct: 496  FAGLVRVPAGDSYQEMIRLVYQHNDIVDVSIHSLYK--ISKYRRSDTGE----PPRLSVL 549

Query: 216  KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
                W     +     + +A  +  L  +++ +   G   + +  +  ++  +  +  T 
Sbjct: 550  GSGAWDRLKEKAKKRIKDIARDLIKLYAKRRRE--KGFAFSPDSFMQHELEASFLYEDTP 607

Query: 276  SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
             Q  A +++ QDM     M R++ GDVG GKT VA+ A   A     Q  ++ P  +LA 
Sbjct: 608  DQLKATQELKQDMESARPMDRLVCGDVGFGKTEVAIRAAFKAAADNKQVAVLVPTTVLAF 667

Query: 336  QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
            QHY+  KK  ++  + V+ ++        R+ L  +A G+ +I++GTH L   S+++  L
Sbjct: 668  QHYQTFKKRLKDMPVRVDYLSRARSARQTRQVLADLAEGKINILVGTHKLIGKSVKWNDL 727

Query: 396  ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
             L+I+DE+ +FGV  + KL Q  T    L M+ATPIPRTL  + +G  D+S +   P  R
Sbjct: 728  GLLIIDEEQKFGVSTKEKLRQLKTNVDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNR 787

Query: 456  KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             PI+T I   +  + + + +   +S   + Y++  +I   +        E  N + ++  
Sbjct: 788  YPIQTEIATFSH-EVIADAINFEMSRNGQVYFVNDRISNLQ--------EIANLIRKYVP 838

Query: 516  S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               +AI HG+M   + E ++  F N    +L++TT++E GID+ +A+ III +A  FGL+
Sbjct: 839  DCRVAIGHGQMKPEELEKIVMGFMNYDYDVLLSTTIVENGIDISNANTIIINDAHRFGLS 898

Query: 575  QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
             LHQ+RGRVGR  + + C LL  P   L+  +  RL  L+   D   GF +A +DL  R 
Sbjct: 899  DLHQMRGRVGRSNKKAFCYLLAPPLAALNTEARRRLEALETFSDLGSGFNLAMQDLDIRG 958

Query: 630  EGEILGIKQSGMPKFL---IAQPELHDSLLEIARKDAKHILTQD 670
             G +LG +QSG  + L     Q  L+ +++E+   + + +  ++
Sbjct: 959  AGNLLGSEQSGFMEDLGYETYQKILNQAVMELKNDEFQDLYAEE 1002


>gi|158312659|ref|YP_001505167.1| transcription-repair coupling factor [Frankia sp. EAN1pec]
 gi|158108064|gb|ABW10261.1| transcription-repair coupling factor [Frankia sp. EAN1pec]
          Length = 1188

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 140/459 (30%), Positives = 230/459 (50%), Gaps = 17/459 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +AG++  L          G     +    +++    PF  T  Q 
Sbjct: 584  DWGKRKSRARKAVKEIAGELIRLY--SARMAAPGHAFGPDSPWQRELEDAFPFRETPDQL 641

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV  G Q  ++ P  +L QQH+
Sbjct: 642  AAIDEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVTDGRQVAVLVPTTLLVQQHF 701

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V+ ++     + +R  L+ +A+G   ++IGTH L     ++  L LV
Sbjct: 702  QTFAERYAPFPVTVKAVSRFNAPSEQRAVLDGLANGTVDVVIGTHRLLSSETKFSDLGLV 761

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +  TA  VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 762  IVDEEQRFGVEHKEHLKKMRTAVDVLTMSATPIPRTLEMSITGIRELSTIDTPPEERHPV 821

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     +V   ++  L    + ++I  ++E                L     + I
Sbjct: 822  LTSVAPYEPR-QVTAAIRRELLREGQVFFIHNRVESID-----RAAAALRELVPE--ARI 873

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++   E VM SF      +L+ TT++E G+D+ +A+ +I+E A++FGL+QLHQ
Sbjct: 874  ATAHGQMNEDALEQVMVSFWEKKFDVLVCTTIVESGLDISNANTLIVERADNFGLSQLHQ 933

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY    PLS+ ++ RL+ +    D   G  +A +DL+ R  G +
Sbjct: 934  LRGRVGRGRERAYAYFLYPADRPLSETAHDRLATIAQHNDLGAGMAVAMKDLEIRGAGNL 993

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            LG +QSG         +L+  ++  A  + K    + P+
Sbjct: 994  LGGEQSGHI--ASVGFDLYVRMVGEAVAEYKGEAEEPPE 1030


>gi|306823693|ref|ZP_07457068.1| ATP-dependent DNA helicase [Bifidobacterium dentium ATCC 27679]
 gi|309802853|ref|ZP_07696954.1| putative ATP-dependent DNA helicase RecG [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553400|gb|EFM41312.1| ATP-dependent DNA helicase [Bifidobacterium dentium ATCC 27679]
 gi|308220320|gb|EFO76631.1| putative ATP-dependent DNA helicase RecG [Bifidobacterium dentium
           JCVIHMP022]
          Length = 881

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 213/887 (24%), Positives = 334/887 (37%), Gaps = 215/887 (24%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+++             ++    +       D L Y+P    +      + E     
Sbjct: 5   LETPITSI-------ETNRRRVGALKSLGVVSIGDALTYYPFRVTEPVPLRALREAKIGE 57

Query: 69  IVTITGYISQHSSFQLQKRR-PYKILLNDG--------TGEI-TLLFFYRKT---EMLKN 115
            +    ++ +   F + +R       ++D          G + +L+FF  +    + ++ 
Sbjct: 58  KMAFAAHVREVRVFPMARRGFRLIATVDDARFAQSRRVAGSLASLVFFSYRKSYVDWVQR 117

Query: 116 VFFEGRKITV---------------------------------------TGKIKKL---- 132
              +G  + +                                       +G+        
Sbjct: 118 RLHDGALLVIAGEPSIYNDRLQFTHPDMLTVNPTDMQSDRHHDMQSPAESGEWNDGPGDG 177

Query: 133 --KNRIIMVHPHYIFHNSQDVNFPLIE------AVYSLPTGLSVDLFKKIIVEALSRL-- 182
             +N +    P        +     +        VY   + +S +   + I++ +  L  
Sbjct: 178 PARNPLQSNLPQSNLTFDAETVQEALTRVCRPRPVYHANSRISSEHIHESILKYMDALRG 237

Query: 183 -----------------------------------PVLPEWIEKDLLQKKSFPSIAEAFN 207
                                                +P+ + + L   +     AEAF 
Sbjct: 238 DEYLAAQRVATVESGQVGEFDRPNIDRAAQTEALAAAVPDIVPEHLRAAEGLMHRAEAFM 297

Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
            IH+P   KD +        L Y+E L  Q AL+  R   +K      + E  +    + 
Sbjct: 298 AIHDPTNTKDCDAALHT---LRYEEALICQTALVKSRDASRKAAASACS-ETALLDDFIA 353

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV----------------GSGKTLVAL 311
           ++PF  T  Q   I DI  DM+    M R+LQG+V                GSG   V +
Sbjct: 354 SLPFDLTAGQRQVIADISADMACDYPMQRLLQGEVGSGKTVVAVAAMMQAVGSGLQAVLV 413

Query: 312 IAMAAAVE---------------------------------------------AGGQAVI 326
                  E                                             AGG+   
Sbjct: 414 APTQVLAEQHYESISKMVQRMGGAVRTAEYGESHEQSTHNQGVDGGAQVGGRSAGGEPAG 473

Query: 327 MAPIGI-LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
             P G  LA    E +        I V ++TG M  + RR+ L   A G + I++ THA 
Sbjct: 474 TGPTGDGLAAG--ESVIGNLPGGDIPVLLLTGGMKLSARRRVLAVAASGTSCIVVATHAA 531

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIPRTLVLTSLGDID 444
           F  + Q   L L ++DEQHRFGV+QR  L  KA   PH+L+MTATPIPRT  +T  GD+D
Sbjct: 532 FSKTFQAPNLALAVIDEQHRFGVEQRESLNAKADKAPHLLVMTATPIPRTAAMTWFGDLD 591

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV---LSEGKKAYWICPQI--------- 492
           IS +TE P GRKPI+T ++P      +     ++   L  G++AY +CP+I         
Sbjct: 592 ISWLTELPGGRKPIRTFVVPEADAHTMASMFALIRSRLDAGERAYVVCPRIDADSTEVDT 651

Query: 493 -----------------EEKKESNFR-------SVVERFNSLHEHFTSSIAIIHGRMSDI 528
                            E+ ++   R        + ER   L +      A + GR  D 
Sbjct: 652 SPDEDPGRSFDELYELGEDDEQRAQRPPLHSVAEIKERLAGLPQFAGIRFATLTGRDDDE 711

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            K  VM  F  GT  +L+ATTVIEVG+DV  AS ++I +A+ +GL+QLHQLRGRVGRG  
Sbjct: 712 TKMRVMADFAAGTTPILVATTVIEVGVDVAQASCMVIFDADRYGLSQLHQLRGRVGRGGT 771

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIA 647
            S   L+       ++  RL V++ + DG  IA+ DL+ R  G++LG  QSG      + 
Sbjct: 772 NSWAFLISRAEAGSDAAQRLEVIRGSLDGAEIAQADLEFRGAGDVLGDAQSGGRSSLKLL 831

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
           +      ++E AR  A+ ++  DPDL     Q    +L   + NE F
Sbjct: 832 RVVKDVKIIEHARTAAEELVAADPDLLG-EVQLAGAVLDFTRGNETF 877


>gi|170748065|ref|YP_001754325.1| transcription-repair coupling factor [Methylobacterium radiotolerans
            JCM 2831]
 gi|170654587|gb|ACB23642.1| transcription-repair coupling factor [Methylobacterium radiotolerans
            JCM 2831]
          Length = 1198

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 144/488 (29%), Positives = 231/488 (47%), Gaps = 27/488 (5%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKK 249
            +LL +        A           D       + R A  +    ++A  L++   Q   
Sbjct: 575  ELLTRYGSEDSEVAL----------DRLGGGAWQARKAKMKRRILEMAGELIKVAAQRFV 624

Query: 250  EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 +     +  +     PF  T+ Q +AI  +L D++    M R++ GDVG GKT V
Sbjct: 625  RKAPALQAPEGLYGEFAARFPFEETEDQANAIDAVLDDLNAGRPMDRLVCGDVGFGKTEV 684

Query: 310  ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            AL A  AA  +G Q  ++ P  +LA+QHY    +  +   + V  ++     A  ++   
Sbjct: 685  ALRAAFAAAISGKQVAVIVPTTLLARQHYRTFAERFKGLPVQVAQLSRFASAAEMKQTRA 744

Query: 370  RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             +A G   I++GTHAL   +I +  L L+IVDE+  FGV  + +L       HVL ++AT
Sbjct: 745  GLAAGTVDIVVGTHALLAKNIAFKDLGLIIVDEEQHFGVAHKERLKALQADVHVLTLSAT 804

Query: 430  PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            PIPRTL L   G  ++S I   P  R  ++T + P + +  + E L      G +++++ 
Sbjct: 805  PIPRTLQLAMTGVRELSIIATPPVDRLVVRTFVTPFDPL-TIREALLRERYRGGQSFYVV 863

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            P+IE+  E       E            +A+ HG+M+    E VM +F  G   +L++TT
Sbjct: 864  PRIEDLAEVKKFLDAEM-------PEIKVAVAHGQMAAGQLEDVMTAFYEGKFDVLLSTT 916

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
            ++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR +  +  +        L+  +  R
Sbjct: 917  IVESGLDIPTANTLIVHRADMFGLAQLYQLRGRVGRSKARAYALFTTPANRQLTAQAEQR 976

Query: 608  LSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            L VL++ +    GF +A  DL  R  G +LG  QSG         EL+  +LE A    K
Sbjct: 977  LKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDAQSGHI--KEVGYELYQQMLEDAVTALK 1034

Query: 665  HILTQDPD 672
              +   P+
Sbjct: 1035 AGIEDVPE 1042


>gi|257484416|ref|ZP_05638457.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 534

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 148/407 (36%), Positives = 215/407 (52%), Gaps = 17/407 (4%)

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            DM     M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY   +   
Sbjct: 1   ADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYNSFRDRF 60

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
            +  + VE+++          A+  +A G+  I+IGTH L QD ++   L LVI+DE+HR
Sbjct: 61  ADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVIIDEEHR 120

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++T ++  
Sbjct: 121 FGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQ 180

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           N+   + E L   L  G + Y++   ++  ++            L     + I I HG+M
Sbjct: 181 NK-PTIKEALLRELLRGGQVYYLHNDVKTIEK-----CAADLAELVPE--ARIGIGHGQM 232

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQLRGRVGR
Sbjct: 233 RERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGR 292

Query: 586 GEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
               +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+LG  QSG
Sbjct: 293 SHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQSG 352

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
                     L+  +LE A K  +    + P+L    G    I L +
Sbjct: 353 QI--QAVGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 395


>gi|237740991|ref|ZP_04571472.1| transcription-repair coupling factor [Fusobacterium sp. 4_1_13]
 gi|229431035|gb|EEO41247.1| transcription-repair coupling factor [Fusobacterium sp. 4_1_13]
          Length = 981

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 141/452 (31%), Positives = 243/452 (53%), Gaps = 12/452 (2%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P   K        ++    +++      ++ ++ +     G   + +  + ++     PF
Sbjct: 394 PEVYKLGRKGFKRKKDKLSEDIEIFAKEIIKIQAKRNLGNGFKFSKDTVMQEEFEETFPF 453

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
           + T +Q  AI+D+ +DM     M R++ GDVG GKT VA+ A   AV    Q +++ P  
Sbjct: 454 TETPAQLKAIEDVKRDMESGKIMDRLICGDVGYGKTEVAIRATFKAVMDSKQVILLVPTT 513

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LA+QHYE   +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D I+
Sbjct: 514 VLAEQHYERFNERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDDIK 573

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  + L+I+DE+ +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I   
Sbjct: 574 FKDVGLLIIDEEQKFGVKAKEKLKKIKGNIDVLTLTATPIPRTLNLSLLGIRDLSVIDTS 633

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P GR+ I T  I  N+ + + + +   +S   + ++I   ++        S V+    L 
Sbjct: 634 PEGRQKIHTEYIDNNK-NLIKDIIFSEISREGQVFYIFNSVK-----MIESKVKEIRELL 687

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
             +   +  IHG+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +IIE  E  
Sbjct: 688 PEYI-KVGYIHGQMLPKDIKKNIQEFENGNIDVLVATTIIENGIDIENANTMIIEGVEKL 746

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDLKQRK 629
           GL+Q++QLRGR+GR  + S C +L +   +KN+  R   ++  +   G  +A ED K R 
Sbjct: 747 GLSQVYQLRGRIGRSTKKSYCYMLMNENKTKNAKKREKSIREFDSLTGLDLAMEDSKIRG 806

Query: 630 EGEILGIKQSGMPK---FLIAQPELHDSLLEI 658
            GEILG KQ G  +   + +    L++ +L++
Sbjct: 807 VGEILGEKQHGAVETFGYNLYMKMLNEEILKL 838


>gi|315501932|ref|YP_004080819.1| transcription-repair coupling factor [Micromonospora sp. L5]
 gi|315408551|gb|ADU06668.1| transcription-repair coupling factor [Micromonospora sp. L5]
          Length = 1218

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 146/482 (30%), Positives = 235/482 (48%), Gaps = 18/482 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
              S AR R A  E+ A  I L   RK  K         +    +++    P+  T  Q +
Sbjct: 608  QKSKARARKAVREIAAQLIQLYAARKASKGHN---FGPDTPWQRELEDAFPWQETPDQLA 664

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+++ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQHY 
Sbjct: 665  AIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYN 724

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +      + +  ++         + LE +A G   I+IGTH L Q + ++  L LVI
Sbjct: 725  TFAERMSQFPVSIRQLSRFQTPKESEQTLEMVAAGTVDIVIGTHRLLQAATRFKSLGLVI 784

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV+ +  L     +  VL M+ATPIPRTL +   G  ++S I   P  R P+ 
Sbjct: 785  IDEEQRFGVEHKEHLKTLRASVDVLAMSATPIPRTLEMAITGIREMSTIATPPEERHPVL 844

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +   +V   +   L    + +++  ++E  +         R   L     + +A
Sbjct: 845  TFVGAYDDR-QVAASIHRELLRDGQVFYLHNRVESIE-----KTARRLRELVPE--ARVA 896

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M +   E VM  F      +L+ TT++E GID+ +A+ +I+E A+  GLAQLHQ+
Sbjct: 897  VAHGQMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQI 956

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGRG E +    LY P  PL++N++ RL+ +    +   G  +A +DL+ R  G +L
Sbjct: 957  RGRVGRGRERAYAYFLYPPEKPLTENAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLL 1016

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
            G +QSG  +      +L+  ++  A    K    ++     V       L + Y   E  
Sbjct: 1017 GGEQSGHIE--GVGFDLYVRMVGEAVSAFKGEQQEEEAEVKVDLPIDAHLPHDYVAVERL 1074

Query: 695  QF 696
            + 
Sbjct: 1075 RL 1076


>gi|255327280|ref|ZP_05368354.1| transcription-repair coupling factor [Rothia mucilaginosa ATCC 25296]
 gi|255295560|gb|EET74903.1| transcription-repair coupling factor [Rothia mucilaginosa ATCC 25296]
          Length = 1249

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 135/439 (30%), Positives = 228/439 (51%), Gaps = 17/439 (3%)

Query: 219  EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W    +R R A  E+ A  + L   R+  +         +    +++  + P++ T  Q
Sbjct: 641  DWAKTKSRARKAVKEIAADLVKLYSARQASRGH---AFAADTPWQRELEESFPYNETPDQ 697

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +AI ++ +DM ++  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH
Sbjct: 698  LTAIHEVKEDMEKEIPMDRLISGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQH 757

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE   +      + + +++        R+  E IA G   ++IGTH +  DS+ +  L L
Sbjct: 758  YETFSERFSGFPVKIRVLSRFQKAKETRQITEEIASGAVDVVIGTHRILSDSVVFKDLGL 817

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ + KL Q  T   VL M+ATPIPRTL ++  G  + S +   P  R P
Sbjct: 818  VIIDEEQRFGVEHKEKLKQMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATAPEERHP 877

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T + P     ++   ++  L    + +++  ++ +  +     V      L     + 
Sbjct: 878  VLTFVGPRTD-SQITAAIRRELMREGQVFFVHNRVADIDD-----VAAEIGKLVPE--AR 929

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IA  HGRMS+   E ++  F      +L+ TT++E G+D+ +A+ +I+++A+++GL+QLH
Sbjct: 930  IATAHGRMSESRLEQIIVDFWERRFDVLVCTTIVETGLDISNANTLIVDHAQNYGLSQLH 989

Query: 578  QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY     L + ++ RL  +    +   G  +A +DL+ R  G 
Sbjct: 990  QLRGRVGRGRERAYAYFLYPVDKTLGEIAHERLKAVATHNELGAGLQLAMKDLEIRGAGN 1049

Query: 633  ILGIKQSGMPKFLIAQPEL 651
            +LG +QSG    +     L
Sbjct: 1050 LLGGEQSGHIAGVGFDLYL 1068


>gi|311113149|ref|YP_003984371.1| transcription-repair coupling factor [Rothia dentocariosa ATCC 17931]
 gi|310944643|gb|ADP40937.1| transcription-repair coupling factor [Rothia dentocariosa ATCC 17931]
          Length = 1229

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 134/439 (30%), Positives = 231/439 (52%), Gaps = 17/439 (3%)

Query: 219  EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W    +R R A  E+ A  + L   R+  +       + +    +++  + P++ T  Q
Sbjct: 620  DWAKTKSRARKAVKEIAADLVKLYSARQASRGH---AFSEDTPWQRELEESFPYNETPDQ 676

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +AI ++  DM ++  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH
Sbjct: 677  LTAIHEVKADMEKEIPMDRLISGDVGFGKTEVAIRAAFKAVQDGKQVAVLVPTTLLAQQH 736

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            +E   +      I +++++        R  +E IA G   ++IGTH +  +++++  L L
Sbjct: 737  FETFTERFSGFPIKIKVLSRFQKAKETRAIVEDIASGSIDVVIGTHRILSENVKFKDLGL 796

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            V++DE+ RFGV+ + KL Q  T   VL M+ATPIPRTL ++  G  + S +   P  R P
Sbjct: 797  VVIDEEQRFGVEHKEKLKQMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATAPEERHP 856

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T + P     ++   ++  L    + +++  ++     +N  +V      L     + 
Sbjct: 857  VLTFVGPRTD-AQITAAIRRELMREGQVFFVHNRV-----ANIDTVAAEIGKLVPE--AR 908

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IA  HGRMS+   E ++  F      +L+ TT++E G+D+ +A+ +I++NA+++GL+QLH
Sbjct: 909  IATAHGRMSESRLEQIIVDFWERRFDVLVCTTIVETGLDISNANTLIVDNAQNYGLSQLH 968

Query: 578  QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY     L + ++ RL  +    +   G  +A +DL+ R  G 
Sbjct: 969  QLRGRVGRGRERAYAYFLYPTDKSLGEVAHKRLKAVATHNELGAGLQLAMKDLEIRGAGN 1028

Query: 633  ILGIKQSGMPKFLIAQPEL 651
            +LG +QSG    +     L
Sbjct: 1029 LLGGEQSGHIAGVGFDLYL 1047


>gi|92117582|ref|YP_577311.1| transcription-repair coupling factor [Nitrobacter hamburgensis X14]
 gi|91800476|gb|ABE62851.1| transcription-repair coupling factor [Nitrobacter hamburgensis X14]
          Length = 1173

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 141/451 (31%), Positives = 226/451 (50%), Gaps = 19/451 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D    S  + R A  +    +IA  L++            + V+  +  +     P+  T
Sbjct: 566  DRLGGSGWQARKAKLKNRIREIAGELIKIAAARHLHEAPKMPVQSGLYDEFCARFPYEET 625

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q  AI   L+D+     M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA
Sbjct: 626  EDQLGAIHASLKDLESGRPMDRLICGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLA 685

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH     +  +   + V   +  +      +  + IA G   I++GTHAL   SI++  
Sbjct: 686  RQHARTFTERFRGFPVNVAQASRLVSSKELAQVKKGIADGSVDIVVGTHALLGKSIKFRD 745

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L++VDE+  FGV  + +L Q     HVL ++ATPIPRTL L   G  D+S I   P  
Sbjct: 746  LGLLVVDEEQHFGVSHKERLKQLRAQVHVLTLSATPIPRTLQLALTGVRDLSIIASPPVD 805

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +A+++ P+I++  E          + L +H 
Sbjct: 806  RLAVRTFVAPHDPL-MIREALLRERYRGGQAFYVVPRIDDLAEVK--------DFLDKHV 856

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M+    E +M +F +G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 857  PEMKVAVAHGQMAPTVIEDIMSAFYDGKYDVLLSTTIVESGLDIPSANTLIVHRADMFGL 916

Query: 574  AQLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            AQL+QLRGRVGR +  +  +        ++  +  RL VL++ E    GF +A  DL  R
Sbjct: 917  AQLYQLRGRVGRSKLRAYALFTLPSTHKITAQAERRLKVLQSLETLGAGFQLASHDLDIR 976

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
              G +LG +QSG         EL+ S+LE A
Sbjct: 977  GAGNLLGEEQSGHI--REVGFELYQSMLEEA 1005


>gi|222085973|ref|YP_002544505.1| transcription-repair coupling factor [Agrobacterium radiobacter K84]
 gi|221723421|gb|ACM26577.1| transcription-repair coupling factor [Agrobacterium radiobacter K84]
          Length = 1166

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 134/458 (29%), Positives = 231/458 (50%), Gaps = 19/458 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +     +A  L+R   +        ++    +  +     P+  T
Sbjct: 565  DKLGGGAWQMRKAKLKKRLLDMAGALIRIAAERLTRHAPVLSTPDGLYDEFAARFPYDET 624

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q +AI+ +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA
Sbjct: 625  EDQMNAIEAVRDDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGAQVAVVVPTTLLA 684

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++      +   I ++  +  +         + ++ G+  I++GTHAL    IQ+  
Sbjct: 685  RQHFKTFTDRFRGLPIRIQQASRLVGAKDLALTKKEVSEGKTDIVVGTHALLGAGIQFAN 744

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 745  LGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVD 804

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G +++++CP++ +  + +     +         
Sbjct: 805  RMAVRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLADLADIHAFLQSDV-------P 856

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I+  A+ FGLA
Sbjct: 857  ELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGLA 916

Query: 575  QLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            QL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  R
Sbjct: 917  QLYQLRGRVGRS-KVRAFALFTLPVNKVLTTTAERRLKVLQSLDTLGAGFQLASHDLDIR 975

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
              G +LG +QSG         EL+  +LE A  + K +
Sbjct: 976  GAGNLLGEEQSGHI--KEVGFELYQQMLEEAVAEVKGV 1011


>gi|219681659|ref|YP_002468045.1| transcription-repair coupling factor [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471348|ref|ZP_05635347.1| transcription-repair coupling factor [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624502|gb|ACL30657.1| transcription-repair coupling factor [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 812

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 150/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +        A Q+  +  +++ K   G       +       +  F  T  Q 
Sbjct: 214 DWNKEKHKISKTVYDHAAQLLHIYAKRESK--TGFSFKKNIEKYDLFCNDCSFKTTSDQN 271

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             +K +L+DMS+   M R++ GDVG GKT +A+ A   AV    Q  I+ P  +LAQQHY
Sbjct: 272 EVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQHY 331

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +  K    N  + + I++    Q  +    +   +G+ +IIIGTH L   +I++  L L+
Sbjct: 332 KNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLGLL 391

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+HRFGV  +  + +  +   +L +TATPIPRTL +   G  D+S I + PA R  I
Sbjct: 392 IIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRLAI 451

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           KT I   + I  + + +   +S G + Y+I  +++     N  ++ ER + L     +SI
Sbjct: 452 KTFIQEYSPI-LIRKTILREISRGGQVYYIYNKVQ-----NIMNIAERLSILIPE--ASI 503

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            I HG+M +ID + VM+ F N    +LI TT+IE G+D+  A+ IIIEN++HFGL+QLHQ
Sbjct: 504 KIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLSQLHQ 563

Query: 579 LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           LRGR+GR    +  +LL +    ++ ++  RL  + + ++   GF ++ +DL+ R  GEI
Sbjct: 564 LRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRGVGEI 623

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG +QSG  K +     +   LL+ A    K
Sbjct: 624 LGKEQSGHIKNIGFSLYMD--LLKNAIDLLK 652


>gi|327188302|gb|EGE55521.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
            CNPAF512]
          Length = 1167

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 135/459 (29%), Positives = 231/459 (50%), Gaps = 21/459 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +     +A  L+R   +        +     +  +     P+  T
Sbjct: 566  DKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLTRHAPVLTTPDGLYDEFSARFPYDET 625

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q++AI+ +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA
Sbjct: 626  EDQDNAIEAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAVVVPTTLLA 685

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++   +  +   + V+  +  +         + +A G+  I++GTHAL    I++  
Sbjct: 686  RQHFKTFSERFRGLPVRVQQASRLVGAKDLALTKKEVAEGKTDIVVGTHALLGAGIKFAN 745

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 746  LGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVD 805

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G +++++CP++ +          +    L    
Sbjct: 806  RMAVRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLADLA--------DVHAFLQSDV 856

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I+  A+ FGL
Sbjct: 857  PELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGL 916

Query: 574  AQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  
Sbjct: 917  AQLYQLRGRVGRS-KVRAFALFTLPVNKVLTATADRRLKVLQSLDTLGAGFQLASHDLDI 975

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            R  G +LG +QSG         EL+  +LE A  + K +
Sbjct: 976  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEAVAEVKGV 1012


>gi|149922002|ref|ZP_01910444.1| Transcription-repair coupling factor [Plesiocystis pacifica SIR-1]
 gi|149817167|gb|EDM76647.1| Transcription-repair coupling factor [Plesiocystis pacifica SIR-1]
          Length = 1243

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 139/462 (30%), Positives = 228/462 (49%), Gaps = 21/462 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIAL--LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + +         Q+A   L +  Q +   G      G +  +  +  PF  T
Sbjct: 615  DRMGGQTFQAKAKKIRSDVRQLAEELLQIYAQREAMTGHAFAPGGDMYAEFEQTFPFEET 674

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q  AI  +  D+S +  M R++ GDVG GKT VAL A      AG Q  ++AP  +L 
Sbjct: 675  PDQADAIDSVQDDLSSQRPMDRLVCGDVGFGKTEVALRAAFRVAAAGKQVAVLAPTTVLV 734

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            QQHY    +      + V ++      A R++ L  I  G   +++GTH L    +++ +
Sbjct: 735  QQHYLTFSERMSAFPLEVGVLNRFSSPADRKRTLAGIKDGTVDVVVGTHRLLSRDVRFKE 794

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L LVI+DE+ RFGV+Q+ +  +  T+  +L +TATPIPRTL ++ LG  +IS IT  P  
Sbjct: 795  LGLVIIDEEQRFGVKQKDRFKKLKTSVDMLTLTATPIPRTLHMSLLGMREISMITTAPVD 854

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T +   + +  + E ++  L+ G + +++ P++   +E        R   L    
Sbjct: 855  RLAVRTYLTRHSDV-VLEEGIRRELARGGQIFYVVPRVMGIEEHAV-----RIRELVPE- 907

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             + + + HG+M     E  M  F      +L++TT+IE G+D+  A+ + I  A+ FGLA
Sbjct: 908  -ARVIVAHGQMPPEMLEQTMVDFVRHEADVLVSTTIIESGLDIPRANTMFIARADQFGLA 966

Query: 575  QLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRK 629
            QL+QLRGR+GR +  + C L+      LS+++  RL  ++       GF +A +DL+ R 
Sbjct: 967  QLYQLRGRIGRSKLRAYCYLMVASLERLSEDARRRLEAIQRHSELGAGFNVASQDLEIRG 1026

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
             G++LG +QSG         E +  +L  A  +    L  DP
Sbjct: 1027 AGDLLGRRQSG--SIQAIGFEAYARILGEAVAE----LRGDP 1062


>gi|86742605|ref|YP_483005.1| transcription-repair coupling factor [Frankia sp. CcI3]
 gi|86569467|gb|ABD13276.1| transcription-repair coupling factor [Frankia sp. CcI3]
          Length = 1208

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 140/483 (28%), Positives = 237/483 (49%), Gaps = 17/483 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +AG++  L          G     +    +++    PF  T  Q 
Sbjct: 602  DWAKRKSRARRAVKEIAGELIRLY--SARMAAPGHAFAPDSPWQRELEDAFPFRETPDQL 659

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 660  AAIDEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 719

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      ++V+ ++     A  +   E +A G   ++IGTH L     ++  L LV
Sbjct: 720  QTFSERYAAFPVVVKAMSRFNSPAEHKAVQEGLATGSVDVVIGTHRLLSGENRFKDLGLV 779

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +  TA  VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 780  IVDEEQRFGVEHKEQLKKMRTAVDVLTMSATPIPRTLEMSITGIRELSTIDTPPEERHPV 839

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   ++  L    + ++I  ++E            R   L     + I
Sbjct: 840  LTSVAAYDAR-QVAAAIRRELLREGQVFFIHNRVETID-----RAAARLRDLVPE--ARI 891

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG++ +   E VM SF      +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLHQ
Sbjct: 892  ATAHGQLHEDALEQVMVSFWEKKFDVLVCTTIVESGLDISNANTLIVERADVFGLSQLHQ 951

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG + +    LY P  PL++ ++ RL+ +    D   G  +A +DL+ R  G +
Sbjct: 952  LRGRVGRGRDRAYAYFLYPPDKPLTETAHDRLATIAQHNDLGAGMAVAMKDLEIRGAGNL 1011

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +QSG         +++  ++  A  + +    ++P    V       L + Y  +E 
Sbjct: 1012 LGGEQSGHI--ASVGFDMYVRMVGEAVAEYRREGVEEPPEVKVELPVDASLPHDYVPSER 1069

Query: 694  FQF 696
             + 
Sbjct: 1070 LRL 1072


>gi|313904443|ref|ZP_07837820.1| transcription-repair coupling factor [Eubacterium cellulosolvens 6]
 gi|313470779|gb|EFR66104.1| transcription-repair coupling factor [Eubacterium cellulosolvens 6]
          Length = 1128

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 171/613 (27%), Positives = 288/613 (46%), Gaps = 48/613 (7%)

Query: 62  SEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
            E+    I+   G + +   + +Q  +   I  +D  G        RK          G 
Sbjct: 397 RELMPGEIMVTRGNVRRGFEYPMQ--QYVLITESDIFGSEQ-----RKKRKTSAKTKSGD 449

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK--IIVEAL 179
           +I         ++   +    Y+ H +  +       VY     ++VD   K  + +E  
Sbjct: 450 RI---------RDFSELSVGDYVVHENHGLG------VYRGIEKITVDHVVKDYVKIEYA 494

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS-PARERLAYDELLAGQI 238
               +  +  + D+LQK    S  E      N  K    EW    +R R A  ++    +
Sbjct: 495 DGGSLFVQATQLDVLQKY---SGGEGHKPKLN--KLGGAEWHKTKSRVRGAVKDIARDLV 549

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           AL   R+Q K         +    ++     PF  T+ Q  AI D  +DM     M R++
Sbjct: 550 ALYAAREQAKGYCY---GEDTVWQREFEEMFPFEETEDQLQAIADTKRDMESSRVMDRLV 606

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            GDVG GKT +A+ A   AV+   Q V++ P  ILAQQH+    +  ++  + +++++  
Sbjct: 607 CGDVGYGKTEIAIRAAFKAVQENKQVVLLCPTTILAQQHFTTFVQRMKDYPVQIDMLSRF 666

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
              A ++K +E +  G   I+IGTH +    ++Y  L L+IVDE+ RFGV  + K+ Q  
Sbjct: 667 RTAAQQKKTIEAVRTGTVDILIGTHRVLSKDVKYKDLGLLIVDEEQRFGVTHKEKIKQLK 726

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               VL +TATPIPRTL ++ +G  D+S + E P  R PI+T ++  +  + + E L   
Sbjct: 727 QNVDVLTLTATPIPRTLHMSMIGIRDMSVLEEPPMDRLPIQTYVMEYDE-EMIREALSRE 785

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L+   +A+ +  +++   E       +R  +L     + +   HG+M + + E +M  F 
Sbjct: 786 LARDGQAFVVYNRVKGIAEMT-----DRIRNLLPD--AVVEYAHGKMKETELEQLMYRFI 838

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           NG   +L+ATT+IE G+D+ + + ++I +A+  GL+QL+QLRGRVGR    S   L+Y  
Sbjct: 839 NGEIDVLVATTIIETGMDISNVNTMVICDADRLGLSQLYQLRGRVGRSNRNSYAFLMYKK 898

Query: 599 P--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
              L +++  RL  ++       G  IA+ DL+ R  G +LG +QSG    +     L+ 
Sbjct: 899 DKMLKEDAEKRLHAIREFTELGSGVKIAKRDLEIRGAGNLLGAEQSGHMGAVGYD--LYA 956

Query: 654 SLLEIARKDAKHI 666
            +L  A ++AK I
Sbjct: 957 KMLGEAVREAKGI 969


>gi|254459943|ref|ZP_05073359.1| transcription-repair coupling factor [Rhodobacterales bacterium
           HTCC2083]
 gi|206676532|gb|EDZ41019.1| transcription-repair coupling factor [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 1150

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 142/451 (31%), Positives = 227/451 (50%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        +     +        P+  T
Sbjct: 539 DRLGGGAWQSKKAKLKERIREMADKLIRVAAERALRRAPIMEPPPGMWDAFSARFPYQET 598

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI D+L DM     M R++ GDVG GKT VA+ A   A  +G Q  I+AP  +LA
Sbjct: 599 DDQLGAIGDVLADMGSGQPMDRLVCGDVGFGKTEVAMRAAFIAAMSGVQVAIIAPTTLLA 658

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY+   +  +   I V  ++  +      +  +R+A G   I++GTHAL   + ++  
Sbjct: 659 RQHYKSFAERFRGFPIEVRPLSRFVTTKDAEETRKRMADGTVDIVVGTHALLAKNTKFNN 718

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L    T  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 719 LGLLIIDEEQHFGVGHKERLKALRTDIHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVD 778

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P+I +  E            L E  
Sbjct: 779 RLAIRTYVSEFDAV-TLREALLREHYRGGQSFYVVPRILDLPEIE--------TFLKEQL 829

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +I+  A+ FGL
Sbjct: 830 PELSYMVAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIVHRADMFGL 889

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           AQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R
Sbjct: 890 AQLYQIRGRVGRSKTRAYAYLTTKPRTKLTTTAEKRLRVLGSLDTLGAGFTLASQDLDIR 949

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG  +      EL+ S+LE A
Sbjct: 950 GAGNLLGEEQSGQMRD--VGYELYQSMLEDA 978


>gi|302865387|ref|YP_003834024.1| transcription-repair coupling factor [Micromonospora aurantiaca ATCC
            27029]
 gi|302568246|gb|ADL44448.1| transcription-repair coupling factor [Micromonospora aurantiaca ATCC
            27029]
          Length = 1218

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 146/482 (30%), Positives = 235/482 (48%), Gaps = 18/482 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
              S AR R A  E+ A  I L   RK  K         +    +++    P+  T  Q +
Sbjct: 608  QKSKARARKAVREIAAQLIQLYAARKASKGHN---FGPDTPWQRELEDAFPWQETPDQLA 664

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+++ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQHY 
Sbjct: 665  AIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYN 724

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +      + +  ++         + LE +A G   I+IGTH L Q + ++  L LVI
Sbjct: 725  TFAERMSQFPVSIRQLSRFQTPKESEQTLEMVAAGTVDIVIGTHRLLQAATRFKSLGLVI 784

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV+ +  L     +  VL M+ATPIPRTL +   G  ++S I   P  R P+ 
Sbjct: 785  IDEEQRFGVEHKEHLKTLRASVDVLAMSATPIPRTLEMAITGIREMSTIATPPEERHPVL 844

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +   +V   +   L    + +++  ++E  +         R   L     + +A
Sbjct: 845  TFVGAYDDR-QVAASIHRELLRDGQVFYLHNRVESIE-----KTARRLRELVPE--ARVA 896

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M +   E VM  F      +L+ TT++E GID+ +A+ +I+E A+  GLAQLHQ+
Sbjct: 897  VAHGQMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQI 956

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGRG E +    LY P  PL++N++ RL+ +    +   G  +A +DL+ R  G +L
Sbjct: 957  RGRVGRGRERAYAYFLYPPEKPLTENAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLL 1016

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
            G +QSG  +      +L+  ++  A    K    ++     V       L + Y   E  
Sbjct: 1017 GGEQSGHIE--GVGFDLYVRMVGEAVSAFKGEQQEEEAEVKVDLPIDAHLPHDYVAVERL 1074

Query: 695  QF 696
            + 
Sbjct: 1075 RL 1076


>gi|45657330|ref|YP_001416.1| transcription-repair coupling factor [Leptospira interrogans serovar
            Copenhageni str. Fiocruz L1-130]
 gi|45600568|gb|AAS70053.1| transcription-repair coupling factor [Leptospira interrogans serovar
            Copenhageni str. Fiocruz L1-130]
          Length = 1186

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 130/457 (28%), Positives = 227/457 (49%), Gaps = 19/457 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W           E LA  +    M     K  G     +    ++      +  T  Q  
Sbjct: 592  WKKTKDRVQKAVEALAEDLV--QMYSNRLKLQGYAFPPDTIYQEEFEAEFEYEETPDQIE 649

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ + +D+     M R++ GDVG GKT VA+ A      AG Q +++AP  ILA QHY 
Sbjct: 650  AIEAVKKDLESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIMMLAPTTILALQHYN 709

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K   +N  + VE+++     A  R  L   + G+  +++GTHA+    ++   L L+I
Sbjct: 710  TFKNRFENYPVRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHAILSSKLKPKNLGLLI 769

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV  +  + +      VL +TATPIPRTL +   G  ++S I   P  R+ ++
Sbjct: 770  IDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRELSIIATPPKNRQSVE 829

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  +  D + + ++  +  G + +++  ++E  +E          + L      SI 
Sbjct: 830  TYVLEEDD-DLISDAIRNEIQRGGQVFYLYNRVETIEEETNY-----LSKLVPEV--SIG 881

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I+HG+M++ + E  +  F N    +L+ TT+IE GID+ + + + ++ A+ FGL+QL+Q+
Sbjct: 882  ILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFGLSQLYQI 941

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL---KNTEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR +  +   +L      +++ +  RL+ +   +    GF +A  DL+ R  G +L
Sbjct: 942  RGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEIRGAGNLL 1001

Query: 635  GIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
            G +QSG    +    +L+  +LE  IAR   + I+ +
Sbjct: 1002 GKEQSG--DIMEVGFDLYVRMLEDAIARIKGEEIVVE 1036


>gi|224532959|ref|ZP_03673567.1| transcription-repair coupling factor [Borrelia burgdorferi WI91-23]
 gi|224512076|gb|EEF82469.1| transcription-repair coupling factor [Borrelia burgdorferi WI91-23]
          Length = 1125

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 238/465 (51%), Gaps = 21/465 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + ++        P+  T  Q  
Sbjct: 532 WIKNKANAKKRIEEIADKLIELYSKRESIKGIKYP--EDNELQLLFESEFPYDETPDQIR 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKFTCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE      ++++ER         + 
Sbjct: 770 AYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERLT-----PYAR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGEEIENIMHNFIEKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           +LG +Q G  + +     L  ++L  A +     ++ D +   + 
Sbjct: 940 LLGREQHGEIESIGLDYYL--TMLNKAIEKKMGKISSDEEEVDIE 982


>gi|51598876|ref|YP_073064.1| transcription-repair coupling factor [Borrelia garinii PBi]
 gi|51573447|gb|AAU07472.1| transcription-repair coupling factor [Borrelia garinii PBi]
          Length = 1124

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 144/452 (31%), Positives = 235/452 (51%), Gaps = 20/452 (4%)

Query: 207 NIIHNPRKAK-DFEWTSPARERLAYDELLAGQIALLL--MRKQFKKEIGIPINVEGKIAQ 263
            I  NP+  K D   +    +  A  +    +IA  L  +  + +   GI    + ++  
Sbjct: 514 YIGSNPKNIKLDKISSKTWIKNKANAKKRIDEIADKLIELYSKRESIKGIKYPEDNELQL 573

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
                 P+  T  Q +AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q
Sbjct: 574 LFESEFPYDETPDQITAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQ 633

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++++P  ILA+QH+   KK  +N  + +E+++  +     ++ L+ +  G+  IIIGTH
Sbjct: 634 VIVLSPTTILAEQHFNTFKKRFKNFPVKIEVLSRFIKNNSEKRILKELKSGEIDIIIGTH 693

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            +         L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   
Sbjct: 694 KILSKKFTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLTLSATPIPRSLHMSLIKLR 753

Query: 444 DISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           DIS +   P  R  I+  +   +   I   IE     LS   + + +   IEE      +
Sbjct: 754 DISVLKIPPKNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--HYLK 808

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           +++E+         + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+
Sbjct: 809 TLIEKLT-----PYARIAIIHGKLTGDEIENIMHNFIKKAYQILLATTIIENGIDIPNAN 863

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED--- 616
            III NA  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    D   
Sbjct: 864 TIIINNANKFGLAQLYQLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSDLGA 923

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
           GF IA +D++ R  G +LG +Q G  + +   
Sbjct: 924 GFKIAMKDMEIRGVGNLLGREQHGEIESIGLD 955


>gi|190891739|ref|YP_001978281.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
            CIAT 652]
 gi|190697018|gb|ACE91103.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
            CIAT 652]
          Length = 1167

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 135/459 (29%), Positives = 230/459 (50%), Gaps = 21/459 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +     +A  L+R   +        +     +  +     P+  T
Sbjct: 566  DKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLTRHAPVLTTPDGLYDEFSARFPYDET 625

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q++AI  +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA
Sbjct: 626  EDQDNAIDAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAVVVPTTLLA 685

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++   +  +   + V+  +  +         + +A G+  I++GTHAL    I++  
Sbjct: 686  RQHFKTFSERFRGLPVRVQQASRLVGAKDLALTKKEVAEGKTDIVVGTHALLGAGIKFAN 745

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 746  LGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVD 805

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G +++++CP++ +          +    L    
Sbjct: 806  RMAVRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLADLA--------DVHAFLQSDV 856

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I+  A+ FGL
Sbjct: 857  PELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGL 916

Query: 574  AQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  
Sbjct: 917  AQLYQLRGRVGRS-KVRAFALFTLPVNKVLTATADRRLKVLQSLDTLGAGFQLASHDLDI 975

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            R  G +LG +QSG         EL+  +LE A  + K +
Sbjct: 976  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEAVAEVKGV 1012


>gi|283458570|ref|YP_003363203.1| transcription-repair coupling factor [Rothia mucilaginosa DY-18]
 gi|283134618|dbj|BAI65383.1| transcription-repair coupling factor [Rothia mucilaginosa DY-18]
          Length = 1330

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 134/439 (30%), Positives = 228/439 (51%), Gaps = 17/439 (3%)

Query: 219  EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W    +R R A  E+ A  + L   R+  +         +    +++  + P++ T  Q
Sbjct: 722  DWAKTKSRARKAVKEIAADLVKLYSARQASRGH---AFAADTPWQRELEESFPYNETPDQ 778

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +AI ++ +DM ++  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH
Sbjct: 779  LTAIHEVKEDMEKEIPMDRLISGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQH 838

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            YE   +      + + +++        R+  E IA G   ++IGTH +  DS+ +  L L
Sbjct: 839  YETFSERFSGFPVKIRVLSRFQKAKETRQITEEIASGAVDVVIGTHRILSDSVVFKDLGL 898

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            VI+DE+ RFGV+ + KL Q  T   VL M+ATPIPRTL ++  G  + S +   P  R P
Sbjct: 899  VIIDEEQRFGVEHKEKLKQMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATAPEERHP 958

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T + P     ++   ++  +    + +++  ++ +  +     V      L     + 
Sbjct: 959  VLTFVGPRTD-SQITAAIRREIMREGQVFFVHNRVADIDD-----VAAEIGKLVPE--AR 1010

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IA  HGRMS+   E ++  F      +L+ TT++E G+D+ +A+ +I+++A+++GL+QLH
Sbjct: 1011 IATAHGRMSESRLEQIIVDFWERRFDVLVCTTIVETGLDISNANTLIVDHAQNYGLSQLH 1070

Query: 578  QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY     L + ++ RL  +    +   G  +A +DL+ R  G 
Sbjct: 1071 QLRGRVGRGRERAYAYFLYPVDKTLGEIAHERLKAVATHNELGAGLQLAMKDLEIRGAGN 1130

Query: 633  ILGIKQSGMPKFLIAQPEL 651
            +LG +QSG    +     L
Sbjct: 1131 LLGGEQSGHIAGVGFDLYL 1149


>gi|116252138|ref|YP_767976.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
            viciae 3841]
 gi|115256786|emb|CAK07876.1| putative transcription-repair coupling factor [Rhizobium
            leguminosarum bv. viciae 3841]
          Length = 1166

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 136/459 (29%), Positives = 232/459 (50%), Gaps = 21/459 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKI-AQKILRNIPFSPT 274
            D       + R A  +     +A  L+R    +     P+    +    +     P+  T
Sbjct: 565  DKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLTRHAPMLTTPEGLYDEFAARFPYDET 624

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + QE+AI+ +  D+     M R++ GDVG GKT VAL A   A   G Q  I+ P  +L+
Sbjct: 625  EDQENAIEAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGAQVAIVVPTTLLS 684

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++      +   + ++  +  +         + +A G+  I++GTHAL    I++  
Sbjct: 685  RQHFKTFSDRFRGLPVRIQQASRLVGAKELALTKKEVAEGKTDIVVGTHALLGAGIKFAN 744

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 745  LGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVD 804

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G +++++CP++ + +        +    L    
Sbjct: 805  RMAVRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLADLE--------DVHAFLQSDV 855

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I+  A+ FGL
Sbjct: 856  PELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGL 915

Query: 574  AQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  
Sbjct: 916  AQLYQLRGRVGRS-KVRAFALFTLPVNKVLTATAERRLKVLQSLDTLGAGFQLASHDLDI 974

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            R  G +LG +QSG         EL+  +LE A  + K +
Sbjct: 975  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEAVAEVKGV 1011


>gi|24215213|ref|NP_712694.1| transcription-repair coupling factor [Leptospira interrogans serovar
            Lai str. 56601]
 gi|24196293|gb|AAN49712.1|AE011418_8 transcription-repair coupling factor [Leptospira interrogans serovar
            Lai str. 56601]
          Length = 1186

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 130/457 (28%), Positives = 227/457 (49%), Gaps = 19/457 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W           E LA  +    M     K  G     +    ++      +  T  Q  
Sbjct: 592  WKKTKDRVQKAVEALAEDLV--QMYSNRLKLQGYAFPPDTIYQEEFEAEFEYEETPDQIE 649

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ + +D+     M R++ GDVG GKT VA+ A      AG Q +++AP  ILA QHY 
Sbjct: 650  AIEAVKKDLESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIMMLAPTTILALQHYN 709

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K   +N  + VE+++     A  R  L   + G+  +++GTHA+    ++   L L+I
Sbjct: 710  TFKNRFENYPVRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHAILSSKLKPKNLGLLI 769

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV  +  + +      VL +TATPIPRTL +   G  ++S I   P  R+ ++
Sbjct: 770  IDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRELSIIATPPKNRQSVE 829

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  +  D + + ++  +  G + +++  ++E  +E          + L      SI 
Sbjct: 830  TYVLEEDD-DLISDAIRNEIQRGGQVFYLYNRVETIEEETNY-----LSKLVPEV--SIG 881

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I+HG+M++ + E  +  F N    +L+ TT+IE GID+ + + + ++ A+ FGL+QL+Q+
Sbjct: 882  ILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFGLSQLYQI 941

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL---KNTEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR +  +   +L      +++ +  RL+ +   +    GF +A  DL+ R  G +L
Sbjct: 942  RGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEIRGAGNLL 1001

Query: 635  GIKQSGMPKFLIAQPELHDSLLE--IARKDAKHILTQ 669
            G +QSG    +    +L+  +LE  IAR   + I+ +
Sbjct: 1002 GKEQSG--DIMEVGFDLYVRMLEDAIARIKGEEIVVE 1036


>gi|224533484|ref|ZP_03674074.1| transcription-repair coupling factor [Borrelia burgdorferi
           CA-11.2a]
 gi|224513364|gb|EEF83725.1| transcription-repair coupling factor [Borrelia burgdorferi
           CA-11.2a]
          Length = 1125

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 238/465 (51%), Gaps = 21/465 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + ++        P+  T  Q  
Sbjct: 532 WIKNKANAKKRIEEIADKLIELYSKRESIKGIKYP--EDNELQLLFESEFPYDETPDQIR 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKFTCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE      ++++ER         + 
Sbjct: 770 AYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERLT-----PYAR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           +LG +Q G  + +     L  ++L  A +     ++ D +   + 
Sbjct: 940 LLGREQHGEIESIGLDYYL--TMLNKAIEKKMGKISSDEEEVDIE 982


>gi|49474197|ref|YP_032239.1| transcription repair coupling factor [Bartonella quintana str.
            Toulouse]
 gi|49239701|emb|CAF26076.1| Transcription repair coupling factor [Bartonella quintana str.
            Toulouse]
          Length = 1166

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 127/452 (28%), Positives = 225/452 (49%), Gaps = 19/452 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W +       +   +AGQ+  +   +  +               + +   P+  T+ Q+ 
Sbjct: 568  WQARKTRLKKHLLEMAGQLIHIAAERATRSAP--AFVPPIGPFDEFVACFPYEETEDQKD 625

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L+D++    M R++ GDVG GKT VA+ +   A   G Q  ++ P  +L++QHY+
Sbjct: 626  AIDAVLEDLASGKPMDRLICGDVGFGKTEVAIRSAFVAALNGYQVAVVVPTTLLSRQHYK 685

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  Q   + +   +  +      +  + ++ G   I++GTHAL   ++ + +L L+I
Sbjct: 686  TFLSRFQGLPVKIAHASRLVKTKEFTQVKKGVSDGTIDIVVGTHALLSGAVNFLRLGLLI 745

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++
Sbjct: 746  IDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRTLGLALSGVRELSLITTPPIDRMAVR 805

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T I P + +  + E L      G +++++CP+I +               L  H      
Sbjct: 806  TFIAPFDTL-VIRETLLREYYRGGQSFYVCPRISDLAFVE--------EYLKTHVPELKF 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M     +++M++F +G   +L++TT+IE G+D+  A+ +I+  AE FGL+ L+Q
Sbjct: 857  VVAHGQMPAGQLDNIMNAFYDGQYDVLLSTTIIESGLDIPTANTLIVHRAEIFGLSALYQ 916

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR ++ +  +  +     L+  +  RL VL++      GF +A  D+  R  G  
Sbjct: 917  LRGRVGRSKQRAYALFTFPSGKVLTAAADRRLKVLQSLNTLGSGFQLASHDMDIRGSGNF 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG         EL+  +LE A  + K 
Sbjct: 977  LGEEQSGHI--KEVGFELYQKMLEEAVAELKD 1006


>gi|312149190|gb|ADQ29261.1| transcription-repair coupling factor [Borrelia burgdorferi N40]
          Length = 1125

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 238/465 (51%), Gaps = 21/465 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + ++        P+  T  Q  
Sbjct: 532 WIKNKANAKKRIEEIADKLIELYSKRESIKGIKYP--EDNELQLLFESEFPYDETPDQIR 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKFTCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE      ++++ER         + 
Sbjct: 770 AYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERLT-----PYAR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           +LG +Q G  + +     L  ++L  A +     ++ D +   + 
Sbjct: 940 LLGREQHGEIESIGLDYYL--TMLNKAIEKKMGKISSDEEEVDIE 982


>gi|307308795|ref|ZP_07588491.1| transcription-repair coupling factor [Sinorhizobium meliloti BL225C]
 gi|307317268|ref|ZP_07596709.1| transcription-repair coupling factor [Sinorhizobium meliloti AK83]
 gi|306897356|gb|EFN28101.1| transcription-repair coupling factor [Sinorhizobium meliloti AK83]
 gi|306900801|gb|EFN31412.1| transcription-repair coupling factor [Sinorhizobium meliloti BL225C]
          Length = 1169

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 137/456 (30%), Positives = 231/456 (50%), Gaps = 19/456 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +     +A  L+R   +        +  +  +  +     P+  T
Sbjct: 566  DKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHTRHAPVLAAQDGVYDEFAARFPYDET 625

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q ++I  +  D+ +   M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA
Sbjct: 626  EDQLNSIDAVRDDLGRGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGVQVAVVVPTTLLA 685

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++      +   I ++  +  +         + +A G+  I++GTHAL   SI++  
Sbjct: 686  RQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTKKEVAEGKTDIVVGTHALLGSSIKFAN 745

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  T  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 746  LGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 805

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G +++++CP++ +  E +     +         
Sbjct: 806  RMAVRTFISPFDAL-VIRETLMREHYRGGQSFYVCPRVSDLPEIHDFLKSDV-------P 857

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I+  A+ FGLA
Sbjct: 858  ELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGLA 917

Query: 575  QLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            QL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  R
Sbjct: 918  QLYQLRGRVGRS-KVRAFALFTLPVNKTLTGPAERRLKVLQSLDTLGAGFQLASHDLDIR 976

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
              G +LG +QSG         EL+  +LE A  + K
Sbjct: 977  GAGNLLGEEQSGHI--KEVGFELYQQMLEEAVAELK 1010


>gi|15965404|ref|NP_385757.1| transcription-repair coupling factor (TRCF) protein [Sinorhizobium
            meliloti 1021]
 gi|15074585|emb|CAC46230.1| Probable transcription-repair coupling factor (TRCF) protein
            [Sinorhizobium meliloti 1021]
          Length = 1171

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 137/456 (30%), Positives = 231/456 (50%), Gaps = 19/456 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +     +A  L+R   +        +  +  +  +     P+  T
Sbjct: 568  DKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHTRHAPVLAAQDGVYDEFAARFPYDET 627

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q ++I  +  D+ +   M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA
Sbjct: 628  EDQLNSIDAVRDDLGRGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGVQVAVVVPTTLLA 687

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++      +   I ++  +  +         + +A G+  I++GTHAL   SI++  
Sbjct: 688  RQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTKKEVAEGKTDIVVGTHALLGSSIKFAN 747

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  T  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 748  LGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 807

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G +++++CP++ +  E +     +         
Sbjct: 808  RMAVRTFISPFDAL-VIRETLMREHYRGGQSFYVCPRVSDLPEIHDFLKSDV-------P 859

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I+  A+ FGLA
Sbjct: 860  ELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGLA 919

Query: 575  QLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            QL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  R
Sbjct: 920  QLYQLRGRVGRS-KVRAFALFTLPVNKTLTGPAERRLKVLQSLDTLGAGFQLASHDLDIR 978

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
              G +LG +QSG         EL+  +LE A  + K
Sbjct: 979  GAGNLLGEEQSGHI--KEVGFELYQQMLEEAVAELK 1012


>gi|150021721|ref|YP_001307075.1| DEAD/DEAH box helicase domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149794242|gb|ABR31690.1| DEAD/DEAH box helicase domain protein [Thermosipho melanesiensis
           BI429]
          Length = 901

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 136/535 (25%), Positives = 257/535 (48%), Gaps = 19/535 (3%)

Query: 171 FKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER-LA 229
             KI  + L R  ++ ++ +  L        + + +       K  +   ++  R+   A
Sbjct: 285 ITKITQKNLEREFLILQFKDSKLFVPTDRLDLVQKYIGASETVKLDNLRKSNWIRKVNKA 344

Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
             E+      LL +    K   G+P+  + ++ ++     P   T+ Q  AI+++ +D+S
Sbjct: 345 KKEIQNTVKELLRLNALRKMTKGLPLPGDPELEKEFANTFPHIETEDQLKAIEEVSEDLS 404

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
               M R++ GD G GKT VA+ A    V +G Q  ++ P  +LA+QH+E  +K  +   
Sbjct: 405 ADKNMDRLIAGDAGYGKTEVAMRAAFKTVVSGKQVALLVPTTVLARQHFENFQKRFKKFG 464

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           I VE+   ++    +    E +  G   I+IGTH +   S+++  L L+I+DE+ +FGV 
Sbjct: 465 IKVELYDNSLTPKQKENVKENVKKGITDIVIGTHGIIA-SMKFSDLGLLIIDEEQKFGVH 523

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           Q+    +     ++L M+ATPIPRTL +   G  D+S +   P GRK I+  +   +   
Sbjct: 524 QKESFKKIRVNINILSMSATPIPRTLHMALSGIKDMSILKTPPIGRKNIQVFVSKFDER- 582

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528
              + +   ++ G +  ++  ++   K        +  ++L +      I I HG+MS  
Sbjct: 583 IARQAILREVNRGGQVLYVHNRVNTIK--------DVADNLKKIVPEVKIEIAHGQMSKR 634

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
             E ++  F +G   +L++T++IE GID+ +A+ +I++++  +GL+QL+QLRGRVGR E+
Sbjct: 635 KMEKIIKEFYDGNLDVLVSTSIIENGIDIPNANTLIVDDSHRYGLSQLYQLRGRVGRSEK 694

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
            +     +   ++K +  RL  +K       G  IA +D++ R  G ILG++Q G    +
Sbjct: 695 RAFAYFFHPSKINKTAQERLKAIKEIMGPGSGLQIALKDMEIRGIGNILGLEQHGFINDI 754

Query: 646 IAQPELHDSLLEIARKDAKHILTQ--DPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
                L   +L     + +  +    + +L  ++G  +    Y+    E  +  R
Sbjct: 755 GLNYYL--EILNEVLSNLEGKIEPKINTELIGMKGSIVIPENYVSDPVERLRLYR 807


>gi|300790028|ref|YP_003770319.1| transcription-repair coupling factor [Amycolatopsis mediterranei U32]
 gi|299799542|gb|ADJ49917.1| transcription-repair coupling factor [Amycolatopsis mediterranei U32]
          Length = 1184

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 133/452 (29%), Positives = 225/452 (49%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +         + +A ++  L   +Q     G     +     ++    PF+ T  Q 
Sbjct: 574  DWKNTKARAKKAVKEIAAELVQLYAARQAA--PGHAFGPDTPWQGELEDAFPFTETNDQL 631

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LAQQH 
Sbjct: 632  AAIDEVKADMERGVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHL 691

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  ++  + ++ ++    +      LE++A G+  I+IGTH L Q  I+Y  L LV
Sbjct: 692  NTFHERMRSFPVTIKGLSRFTNKTESDIILEQLASGEVDIVIGTHRLLQTGIRYKDLGLV 751

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 752  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEDRHPI 811

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   ++  L    + +++  ++   +         R   L     + +
Sbjct: 812  LTYVGAYDD-KQVGAAIRRELLRDGQVFYVHNRVSSIE-----KAARRIRELVPE--ARV 863

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E ++  F      +L+ TT++E G+D+ +A+ +++E  +  GLAQLHQ
Sbjct: 864  VTAHGQMNEDKLEKIIQGFWENEYDVLVCTTIVETGLDISNANTLLVERGDLLGLAQLHQ 923

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G I
Sbjct: 924  LRGRVGRGRERGYAYFLYPPEAPLTETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGNI 983

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG         +L+  L+  A    + 
Sbjct: 984  LGAEQSGHI--AGVGFDLYVRLVGEAVDAFRR 1013


>gi|225351843|ref|ZP_03742866.1| hypothetical protein BIFPSEUDO_03444 [Bifidobacterium
            pseudocatenulatum DSM 20438]
 gi|225157090|gb|EEG70429.1| hypothetical protein BIFPSEUDO_03444 [Bifidobacterium
            pseudocatenulatum DSM 20438]
          Length = 1182

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 228/452 (50%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 581  DWAATKAKARKHVHEIAEDLVKLYSARQR--MQGYAFSKDTPWQKELEDAFPYQETADQL 638

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+   Q  ++ P  +L QQH+
Sbjct: 639  TTIDEVKSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAVQDSKQVAVLVPTTLLVQQHF 698

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++           +E +  G   ++IGTH L    +++  L LV
Sbjct: 699  ETFTERFEGFPVEVRAMSRFQTTKEINDTIEGLEDGSVDVVIGTHKLLGPKVKFKDLGLV 758

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 759  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 818

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  +++     +  SV  + + L     S +
Sbjct: 819  LTYVGAYED-AQVTAAVRRELLRGGQVFYVHNRVQ-----DIASVAAKIHELVPE--SHV 870

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 871  GIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 930

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 931  LRGRVGRGRERAYAYFLYDPTKPMTQQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 990

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 991  LGDEQSGHIE--GVGFDLYVRMVSEAVEQYKE 1020


>gi|225549983|ref|ZP_03770944.1| transcription-repair coupling factor [Borrelia burgdorferi 118a]
 gi|225369442|gb|EEG98894.1| transcription-repair coupling factor [Borrelia burgdorferi 118a]
          Length = 1125

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 238/465 (51%), Gaps = 21/465 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + ++        P+  T  Q  
Sbjct: 532 WIKNKANAKKRIEEIADKLIELYSKRESIKGIKYP--EDNELQLLFESEFPYDETPDQIR 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKFTCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE      ++++ER         + 
Sbjct: 770 AYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERLT-----PYAR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           +LG +Q G  + +     L  ++L  A +     ++ D +   + 
Sbjct: 940 LLGREQHGEIESIGLDYYL--TMLNKAIEKKMGKISSDEEEVDIE 982


>gi|37728037|gb|AAO43498.1| transcription repair coupling factor [Rhizobium etli]
          Length = 1114

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 136/459 (29%), Positives = 231/459 (50%), Gaps = 21/459 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +     +A  L+R   +        +     +  +     P+  T
Sbjct: 566  DKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLTRHAPVLTTPDGLYDEFAARFPYDET 625

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q++AI+ +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA
Sbjct: 626  EDQDNAIEAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAVVVPTTLLA 685

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++   +  +   + V+  +  +         + +A G+  I++GTHAL    I++  
Sbjct: 686  RQHFKTFSERFRGLPVRVQQASRLVGAKDLALTKKEVADGKTDIVVGTHALLGAGIKFAN 745

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 746  LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVD 805

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G +++++CP++ +          +    L    
Sbjct: 806  RMALRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLADLA--------DVHAFLQSDV 856

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I+  A+ FGL
Sbjct: 857  PELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGL 916

Query: 574  AQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  
Sbjct: 917  AQLYQLRGRVGRS-KVRAFALFTLPVNKVLTATAERRLKVLQSLDTLGAGFQLASHDLDI 975

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            R  G +LG +QSG         EL+  +LE A  + K +
Sbjct: 976  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEAVAEVKGV 1012


>gi|227822023|ref|YP_002825994.1| putative transcription-repair coupling factor [Sinorhizobium fredii
            NGR234]
 gi|227341023|gb|ACP25241.1| putative transcription-repair coupling factor [Sinorhizobium fredii
            NGR234]
          Length = 1170

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 136/456 (29%), Positives = 231/456 (50%), Gaps = 19/456 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +     +A  L+R   +        +  +  +  +     P+  T
Sbjct: 567  DKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHTRHAPALVAQDGVYDEFAARFPYEET 626

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q ++I+ +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA
Sbjct: 627  EDQLNSIEAVRDDLGGGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGVQVAVVVPTTLLA 686

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++      +   I ++  +  +         + +A G+  I++GTHAL   SI++  
Sbjct: 687  RQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTKKEVADGKTDIVVGTHALLGSSIKFAN 746

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  T  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 747  LGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 806

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G +++++CP++ +  E +     +         
Sbjct: 807  RMAVRTFISPFDAL-VIRETLMREHYRGGQSFYVCPRLSDLSEIHDFLKSDV-------P 858

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +++  A+ FGLA
Sbjct: 859  ELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLVVHRADMFGLA 918

Query: 575  QLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            QL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  R
Sbjct: 919  QLYQLRGRVGRS-KVRAFALFTLPVNKTLTGPAERRLKVLQSLDTLGAGFQLASHDLDIR 977

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
              G +LG +QSG         EL+  +LE A  + K
Sbjct: 978  GAGNLLGGEQSGHI--KEVGFELYQQMLEEAVAELK 1011


>gi|221217955|ref|ZP_03589422.1| transcription-repair coupling factor [Borrelia burgdorferi 72a]
 gi|221192261|gb|EEE18481.1| transcription-repair coupling factor [Borrelia burgdorferi 72a]
          Length = 1125

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 238/465 (51%), Gaps = 21/465 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + ++        P+  T  Q  
Sbjct: 532 WIKNKANAKKRIEEIADKLIELYSKRESIKGIKYP--EDNELQLLFESEFPYDETPDQIR 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKFTCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE      ++++ER         + 
Sbjct: 770 AYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERLT-----PYAR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           +LG +Q G  + +     L  ++L  A +     ++ D +   + 
Sbjct: 940 LLGREQHGEIESIGLDYYL--TMLNKAIEKKMGKISSDEEEVDIE 982


>gi|225548852|ref|ZP_03769829.1| transcription-repair coupling factor [Borrelia burgdorferi 94a]
 gi|225370455|gb|EEG99891.1| transcription-repair coupling factor [Borrelia burgdorferi 94a]
          Length = 1125

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 238/465 (51%), Gaps = 21/465 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + ++        P+  T  Q  
Sbjct: 532 WIKNKANAKKRIEEIADKLIELYSKRESIKGIKYP--EDNELQLLFESEFPYDETPDQIR 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKFTCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE      ++++ER         + 
Sbjct: 770 AYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERLT-----PYAR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           +LG +Q G  + +     L  ++L  A +     ++ D +   + 
Sbjct: 940 LLGREQHGEIESIGLDYYL--TMLNKAIEKKMGKISSDEEEVDIE 982


>gi|256043474|ref|ZP_05446403.1| transcription-repair coupling factor [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|260564670|ref|ZP_05835155.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265989892|ref|ZP_06102449.1| transcription-repair coupling factor [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|260152313|gb|EEW87406.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263000561|gb|EEZ13251.1| transcription-repair coupling factor [Brucella melitensis bv. 1 str.
            Rev.1]
          Length = 1170

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 228/452 (50%), Gaps = 21/452 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    +IA  L++   + +      +     +  +     P+  T
Sbjct: 568  DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQMRGAPVMTPPDGLYAEFAARFPYDET 627

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q +AI+ +  D++Q   M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L+
Sbjct: 628  DDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLS 687

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++          I V   +  +         + +  G   I++GTHAL   SI++  
Sbjct: 688  RQHFKTFSNRFHGLPINVAHASRLVGAKELAATKKGLEEGTVDIVVGTHALLGSSIKFKN 747

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ +  L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 748  LGLLIIDEEQHFGVKHKEWLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 807

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +++++ P+I +  +            L EH 
Sbjct: 808  RMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVVPRIADLTDIE--------EFLKEHV 858

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 859  PELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGL 918

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  +  +  L   P    L++ +  RL VL++ +    GF +A  D+  
Sbjct: 919  AQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDI 977

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G +LG +QSG         EL+  +LE A
Sbjct: 978  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 1007


>gi|294011405|ref|YP_003544865.1| transcription-repair coupling factor [Sphingobium japonicum UT26S]
 gi|292674735|dbj|BAI96253.1| transcription-repair coupling factor [Sphingobium japonicum UT26S]
          Length = 1154

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 146/514 (28%), Positives = 242/514 (47%), Gaps = 32/514 (6%)

Query: 164 TGLSVDLFKKIIVE--ALSRLPVLPEWIE---KDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
            GL+     K   +  AL        ++     ++L +    S   +           D 
Sbjct: 502 EGLTQIPVAKAAHDCVALEYAGGDKLYVPVENLEVLSRYGSESEGVSL----------DK 551

Query: 219 EWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
                 + R A  +    +IA  L++   +           +       +   P+  T  
Sbjct: 552 LGGEAWQRRKARMKERIREIAGELLKTAAERALRPATVAEPDSAGYPAFVDRFPYQETDD 611

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+ AI D+++D+     M R++ GDVG GKT VAL A   A  AG Q V++ P  +LA+Q
Sbjct: 612 QDRAISDVIEDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMAGMQVVVICPTTLLARQ 671

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+   ++  +   + +  ++  +P    +     +A G   I++GTHAL    +++ +L 
Sbjct: 672 HHMNFEERFRGFPVKIGRLSRLVPDKEAKAVKAGLADGTVDIVVGTHALLAKGLEFKRLG 731

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDE+ RFGV  + +L    T  HVL +TATPIPRTL +   G  ++S I   P  R 
Sbjct: 732 LVIVDEEQRFGVTHKERLKSLKTDVHVLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRL 791

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            ++T I+P + +  + E L      G +++++ P+I +  E       E           
Sbjct: 792 AVRTYIMPWDGV-VIREALLREHYRGGQSFFVVPRISDLTEIEEFLRTEV-------PEV 843

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
              + HG+MS  + E  M +F +    +L++TT++E G+D+  A+ +II  A+ FGLAQL
Sbjct: 844 RPVVAHGQMSATEVEERMSAFYDRRYDVLLSTTIVESGLDIPSANTLIIHRADRFGLAQL 903

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           +QLRGRVGR +  +           +++ +  RL VL + +    GF +A  DL  R  G
Sbjct: 904 YQLRGRVGRAKTRAYAYFTTPANRVITETAEKRLKVLSDLDTLGAGFQLASHDLDIRGAG 963

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            ++G +QSG         EL+ S+LE A  +AK 
Sbjct: 964 NLVGDEQSGHI--KEVGFELYQSMLEDAILEAKA 995


>gi|223889464|ref|ZP_03624050.1| transcription-repair coupling factor [Borrelia burgdorferi 64b]
 gi|223885150|gb|EEF56254.1| transcription-repair coupling factor [Borrelia burgdorferi 64b]
          Length = 1125

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 239/465 (51%), Gaps = 21/465 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + ++        P+  T  Q  
Sbjct: 532 WIKNKANAKKRIEEIADKLIELYSKRESIKGIKYP--EDNELQLLFESEFPYDETPDQIR 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKFTCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE      ++++ER         + 
Sbjct: 770 AYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERLT-----PYAR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           +LG +Q G  + +     L  ++L  A +     ++ D +   ++
Sbjct: 940 LLGREQHGEIESIGLDYYL--TMLNKAIEKKMGKISSDEEEVDIK 982


>gi|94984652|ref|YP_604016.1| transcription factor CarD [Deinococcus geothermalis DSM 11300]
 gi|94554933|gb|ABF44847.1| transcription factor CarD [Deinococcus geothermalis DSM 11300]
          Length = 1041

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 154/529 (29%), Positives = 258/529 (48%), Gaps = 38/529 (7%)

Query: 197 KSFPSIAEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
           +  P +        +P     F+      +  + R   +E+ A  +     R+      G
Sbjct: 413 EQLPVLRRHPGTTDDPPVLSSFDKKDWARAKEKARKNAEEVAARLLVQYAARQ---VTPG 469

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
                + +   ++ RN  F  T  Q++A+K+ ++D+   +   R++ GDVG GKT VAL 
Sbjct: 470 NSFPPQPEWDAQVERNFKFELTADQKTALKETMRDLEAPHPADRLISGDVGFGKTEVALR 529

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           A    V  G Q  ++ P  +LA+QH     +  ++  + VE ++        +  L  +A
Sbjct: 530 AAHRVVGHGKQVAMLVPTTLLAEQHTSTFVERFKDLPVRVEGLSRFTGDKQAKAILADLA 589

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--------- 423
            G+  IIIGTH L    +Q+  L L+IVDE+HRFGV Q+ KL      P V         
Sbjct: 590 AGKVDIIIGTHRLLSSDVQFKDLGLIIVDEEHRFGVGQKEKLRALRGLPDVPKDGKLELP 649

Query: 424 --------LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   L ++ATPIPRTL ++ +G  D+S I   P GRKPI+TV+ P + +  V + +
Sbjct: 650 EGVKAVDTLALSATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTVLAPFDPV-TVRDAI 708

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              +  G K ++I  +I      +         +L     + I + HGRM++ + E +M 
Sbjct: 709 LNEIERGGKVFYIHDRIASIGARSLY-----LRNLVPE--ARIGVAHGRMNEEELEEIML 761

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F+ G   +L++TT++E G+D+ +A+ I+IE A+  GLAQL+QLRGRVGR ++ +   L 
Sbjct: 762 GFEQGAFDVLLSTTIVETGLDIPEANTILIERADRLGLAQLYQLRGRVGRRQQTAYAYLF 821

Query: 596 YHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           Y P +++N+  RL  + + +D   G L+AE+D++ R  G ILG +Q G         +++
Sbjct: 822 YPPRMTENAQRRLWAIADLQDLGSGHLLAEKDMEIRGVGNILGEEQHGH--VQAVSIDVY 879

Query: 653 DSLLEIARKDAK-HILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
             +L  A    K   L   P ++     + R+    +  NE  +    G
Sbjct: 880 TEMLAEAVARLKGEPLEAPPTVSIDLPINARLTPEYFDGNEEERIATYG 928


>gi|300813641|ref|ZP_07093966.1| TRCF domain protein [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512247|gb|EFK39422.1| TRCF domain protein [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 580

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 134/445 (30%), Positives = 226/445 (50%), Gaps = 17/445 (3%)

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            + +A  +  L   ++ K   G   + +    ++      +  T  Q  + ++I +DM +
Sbjct: 1   IDDMADDLIKLYAARESK--SGFKFSKDSSFQREFEDAFIYEETDGQLLSSEEIKKDMEE 58

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
            + M R+L  DVG GKT VAL A   A+  G Q   + P  ILAQQHY  + +  ++  +
Sbjct: 59  AHPMDRLLCADVGYGKTEVALRAAFKAILDGKQVAFLVPTTILAQQHYNIMVERFKDFPV 118

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V I++    +  +++ +E++  G   II+GTH L    + +  L L+I+DE+ RFGV+ 
Sbjct: 119 EVGILSRFRTKKEQKETIEKLKAGIVDIIVGTHRLLSKDVVFKDLGLLIIDEEQRFGVRH 178

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           + KL         L ++ATPIPRTL ++ +G  D+S I E P  R P+KT ++  N +  
Sbjct: 179 KEKLKMLKENIDTLTLSATPIPRTLQMSMIGIRDMSVIEEPPEERFPVKTYVLEYNPL-M 237

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           V E +   +  G + Y++  ++     +N    +++   L      S  + +G+M++ D 
Sbjct: 238 VREAILREVERGGQVYFVYNRV-----ANMEYKLQQLRELVPEV--SFVMANGQMNEKDL 290

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E  M SF  G   +L+ +T+IE G+DV +A+ +II ++   GL+QL+QLRGR+GR   ++
Sbjct: 291 EDTMLSFLRGDVDVLLCSTIIETGMDVQNANTMIITDSNRLGLSQLYQLRGRIGRSSRVA 350

Query: 591 SCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
                Y     +S+ +  RL  +K       GF IA  DL+ R  G ILG KQ G    +
Sbjct: 351 YAYFTYEKDVSISEIAQKRLKTIKEFTEFGSGFKIALRDLEIRGSGSILGSKQHGHIDNI 410

Query: 646 IAQPELHDSLLEIARKDAKHILTQD 670
                L+   L  +    K I T++
Sbjct: 411 GYD--LYMKYLTQSVNKLKGIETRE 433


>gi|255262960|ref|ZP_05342302.1| transcription-repair coupling factor [Thalassiobium sp. R2A62]
 gi|255105295|gb|EET47969.1| transcription-repair coupling factor [Thalassiobium sp. R2A62]
          Length = 1151

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 138/449 (30%), Positives = 227/449 (50%), Gaps = 17/449 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    QIA  L+R   + +      +     +        P+  T
Sbjct: 540 DKLGGGAWQAKKAKLKERIRQIAERLIRVAAERELRTAPIMTPPDGMWDSFCARFPYVET 599

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + Q  AI D+++DM     M R++ GDVG GKT VA+ A   A  +G Q  I+AP  +LA
Sbjct: 600 EDQLGAISDVIEDMGAGRPMDRLVCGDVGFGKTEVAMRAAFVAAMSGTQVAIIAPTTLLA 659

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY+   +  +   I V  ++  +         + I+ G A I++GTHAL   SI++  
Sbjct: 660 RQHYKSFAERFRGFPINVRPLSRFVGTKDAAATRDGISDGTADIVVGTHALLAKSIKFKD 719

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+ +FGV  + +L    T  HVL +TATPIPRTL L+  G  ++S I   P  
Sbjct: 720 LGLLIIDEEQKFGVTHKERLKSLRTDVHVLTLTATPIPRTLQLSLSGVRELSIIGTPPVD 779

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + I  + E L      G +++++ P+I +  E       E         
Sbjct: 780 RLAIRTYVSEFDTI-TLREALLREHYRGGQSFFVVPRISDLPEIEDFLKSEV-------P 831

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             S    +G+++  + +  M++F +G   +L+ATT++E G+D+  A+ +I+  A+ FGL+
Sbjct: 832 EVSYIQANGQLAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIVHRADMFGLS 891

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QL+Q+RGRVGR +  +   +   P   L++ +  RL VL + +    GF +A +DL  R 
Sbjct: 892 QLYQIRGRVGRSKTRAYAYMTTKPRQKLTQTAEKRLRVLASLDSLGAGFTLASQDLDIRG 951

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            G +LG +QSG         EL+  +LE 
Sbjct: 952 AGNLLGEEQSGQM--REVGYELYQQMLEE 978


>gi|212716156|ref|ZP_03324284.1| hypothetical protein BIFCAT_01072 [Bifidobacterium catenulatum DSM
            16992]
 gi|212661523|gb|EEB22098.1| hypothetical protein BIFCAT_01072 [Bifidobacterium catenulatum DSM
            16992]
          Length = 1182

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 127/452 (28%), Positives = 228/452 (50%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G   + +    +++    P+  T  Q 
Sbjct: 581  DWAATKAKARKHVHEIAEDLVKLYSARQR--MQGYAFSKDTPWQKELEDAFPYQETADQL 638

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+   Q  ++ P  +L QQH+
Sbjct: 639  TTIDEVKSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAVQDSKQVAVLVPTTLLVQQHF 698

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++           ++ +  G   ++IGTH L    +++  L LV
Sbjct: 699  ETFTERFEGFPVEVRAMSRFQTTKEINDTIKGLEDGSVDVVIGTHKLLGPKVKFKDLGLV 758

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 759  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 818

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L  G + +++  +++     +  SV  + + L     S +
Sbjct: 819  LTYVGAYED-AQVTAAVRRELLRGGQVFYVHNRVQ-----DIASVAAKIHELVPE--SHV 870

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 871  GIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 930

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 931  LRGRVGRGRERAYAYFLYDPTKPMTQQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 990

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 991  LGDEQSGHIE--GVGFDLYVRMVSEAVEQYKE 1020


>gi|15594968|ref|NP_212757.1| transcription-repair coupling factor (mfd) [Borrelia burgdorferi
           B31]
 gi|3914012|sp|O51568|MFD_BORBU RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|2688542|gb|AAC66973.1| transcription-repair coupling factor (mfd) [Borrelia burgdorferi
           B31]
          Length = 1125

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 239/465 (51%), Gaps = 21/465 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + ++        P+  T  Q  
Sbjct: 532 WIKNKANAKKRIEEIADKLIELYSKRESIKGIKYP--EDNELQLLFESEFPYDETPDQIR 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKFTCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE      ++++ER         + 
Sbjct: 770 AYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERLT-----PYAR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           +LG +Q G  + +     L  ++L  A +     ++ D +   ++
Sbjct: 940 LLGREQHGEIESIGLDYYL--TMLNKAIEKKMGKISSDEEEVDIK 982


>gi|114777171|ref|ZP_01452182.1| transcription-repair coupling factor [Mariprofundus ferrooxydans
           PV-1]
 gi|114552316|gb|EAU54799.1| transcription-repair coupling factor [Mariprofundus ferrooxydans
           PV-1]
          Length = 1109

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 136/453 (30%), Positives = 222/453 (49%), Gaps = 17/453 (3%)

Query: 219 EWTSPARERLAYDELLA-GQIALL-LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
           E     RER+  D L    ++  +   R    +   +         ++     PF  T  
Sbjct: 514 EKWKRTRERVKRDLLAMAHELIDIEAARTSASRPPCLLQGPLLDAYEEFAARFPFEETDD 573

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  AI  +L D++    M R++ GDVG GKT VA+ A     E+G Q  ++AP  +LA Q
Sbjct: 574 QAQAIDAVLTDLALDKPMDRVICGDVGFGKTEVAMRAAFVVAESGRQVAVLAPTTVLANQ 633

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HY    +    T + V +I+    +    +    +A G   II+GTH L  D+ ++  L 
Sbjct: 634 HYASFAERFIGTDLKVAMISRLQGKKEVEQICRGLAGGDIRIIVGTHRLLSDTFEFADLG 693

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           +VIVDE+ RFGV+ + KL     +  +L +TATPIPRTL  T  G   +S I+  PA R+
Sbjct: 694 MVIVDEEQRFGVKHKQKLKSLHASVDLLTLTATPIPRTLHQTMSGLRSVSIISTPPAERE 753

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I+T++   +      E ++  L  G + Y++   ++  +    R   +          +
Sbjct: 754 AIRTMVSSFD-PHIAREAIRRELYRGGQVYYLHNHVQSIERITARLREDV-------PEA 805

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I I HG+M+  + +  M +F  G   +L+ TT+IE G+DV +A+ +I+E A+  GL+QL
Sbjct: 806 EIGIAHGQMTPAELDRQMLAFYEGRLHILVCTTIIESGLDVANANTLIVERADLLGLSQL 865

Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           HQ+RGRVGR    +   L       ++ ++  RL  +    +   GFL+A +D++ R  G
Sbjct: 866 HQIRGRVGRSHRQAYAYLFTPDARAMTADARERLQAIAEHSELGAGFLLARQDMEIRGAG 925

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            +LG +QSG    +     L   +L  A  +A+
Sbjct: 926 NLLGAEQSGRIDEIGLDMYLD--MLSDAVAEAR 956


>gi|312148294|gb|ADQ30953.1| transcription-repair coupling factor [Borrelia burgdorferi JD1]
          Length = 1125

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 238/465 (51%), Gaps = 21/465 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + ++        P+  T  Q  
Sbjct: 532 WIKNKANAKKRIEEIADKLIELYSKRESIKGIKYP--EDNELQLLFESEFPYDETPDQIR 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKFTCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE      ++++ER         + 
Sbjct: 770 AYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERLT-----PYAR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           +LG +Q G  + +     L  ++L  A +     ++ D +   + 
Sbjct: 940 LLGREQHGEIESIGLDYYL--TMLNKAIEKKMGKISSDEEEVDIE 982


>gi|319898902|ref|YP_004158995.1| transcription repair coupling factor [Bartonella clarridgeiae 73]
 gi|319402866|emb|CBI76417.1| transcription repair coupling factor [Bartonella clarridgeiae 73]
          Length = 1166

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 220/452 (48%), Gaps = 19/452 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W +       +   +AGQ+  +   +  +      +     +  + +   P+  T  Q  
Sbjct: 568  WQTRKTRLKKHLLKIAGQLICIAAERATRSAP--ALTPPVGLFDEFVACFPYEETDDQMD 625

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI  +L D++    M R++ GDVG GKT VA+ +       G Q  ++ P  +L++QHY+
Sbjct: 626  AIDAVLDDLASGKPMDRLICGDVGFGKTEVAIRSAFVTALNGYQVAVVVPTTLLSRQHYK 685

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  +   + +  ++  +      +  + I+ G   I+IGTHAL  DS+ + +L L+I
Sbjct: 686  TFMSRFEGLPVKIAHLSRLVKTKELAQVKKGISEGTIDIVIGTHALLNDSVNFSRLGLLI 745

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++
Sbjct: 746  IDEEQHFGVKHKERLKKLKSDIHVLTLSATPIPRTLSLALSGLRELSLITTPPIDRMAVR 805

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T I P + +  + E L      G +++++CP+I +               L  H      
Sbjct: 806  TFISPFDVM-VIRETLLREYYRGGQSFYVCPRISDLSYVE--------EYLKTHVPELKF 856

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M     + +M++F +G   +L++TT+IE G+D+  A+ +I+  AE FGL+ L+Q
Sbjct: 857  VIAHGQMPARQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANTLIVHRAEMFGLSALYQ 916

Query: 579  LRGRVGRGEEISSCILLYHP-----PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGR ++ +  +  +       P +      L  L     GF +A  D+  R  G +
Sbjct: 917  LRGRVGRSKQRAYALFTFPSGKVLIPAADRRLKVLQSLDTLGAGFQLASHDMDIRGSGNL 976

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG         EL+  +LE A  + K 
Sbjct: 977  LGEEQSGHI--KEVGFELYQKMLEEAVAELKD 1006


>gi|216264837|ref|ZP_03436829.1| transcription-repair coupling factor [Borrelia burgdorferi 156a]
 gi|215981310|gb|EEC22117.1| transcription-repair coupling factor [Borrelia burgdorferi 156a]
          Length = 1125

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 238/465 (51%), Gaps = 21/465 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + ++        P+  T  Q  
Sbjct: 532 WIKNKANAKKRIEEIADKLIELYSKRESIKGIKYP--EDNELQLLFESEFPYDETPDQIR 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKFTCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE      ++++ER         + 
Sbjct: 770 AYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERLT-----PYAR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           +LG +Q G  + +     L  ++L  A +     ++ D +   + 
Sbjct: 940 LLGREQHGEIESIGLDYYL--TMLNKAIEKKMGKISSDEEEVDIE 982


>gi|300743898|ref|ZP_07072918.1| transcription-repair coupling factor [Rothia dentocariosa M567]
 gi|300380259|gb|EFJ76822.1| transcription-repair coupling factor [Rothia dentocariosa M567]
          Length = 1229

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 134/439 (30%), Positives = 230/439 (52%), Gaps = 17/439 (3%)

Query: 219  EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W     R R A  E+ A  + L   R+  +       + +    +++  + P++ T  Q
Sbjct: 620  DWAKTKNRARKAVKEIAADLVKLYSARQASRGH---AFSEDTPWQRELEESFPYNETPDQ 676

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +AI ++  DM ++  M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQH
Sbjct: 677  LTAIHEVKADMEKEIPMDRLISGDVGFGKTEVAIRAAFKAVQDGKQVAVLVPTTLLAQQH 736

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            +E   +      I +++++        R  +E IA G   ++IGTH +  +++++  L L
Sbjct: 737  FETFTERFSGFPIKIKVLSRFQKAKETRTIVEDIASGSIDVVIGTHRILSENVKFKDLGL 796

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            V++DE+ RFGV+ + KL Q  T   VL M+ATPIPRTL ++  G  + S +   P  R P
Sbjct: 797  VVIDEEQRFGVEHKEKLKQMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATAPEERHP 856

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
            + T + P     ++   ++  L    + +++  ++     +N  +V      L     + 
Sbjct: 857  VLTFVGPRTD-AQITAAIRRELMREGQVFFVHNRV-----ANIDTVAAEIGKLVPE--AR 908

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IA  HGRMS+   E ++  F      +L+ TT++E G+D+ +A+ +I++NA+++GL+QLH
Sbjct: 909  IATAHGRMSESRLEQIIVDFWERRFDVLVCTTIVETGLDISNANTLIVDNAQNYGLSQLH 968

Query: 578  QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGRG E +    LY     L + ++ RL  +    +   G  +A +DL+ R  G 
Sbjct: 969  QLRGRVGRGRERAYAYFLYPTDKSLGEVAHERLKAVATHNELGAGLQLAMKDLEIRGAGN 1028

Query: 633  ILGIKQSGMPKFLIAQPEL 651
            +LG +QSG    +     L
Sbjct: 1029 LLGGEQSGHIAGVGFDLYL 1047


>gi|319407247|emb|CBI80886.1| transcription repair coupling factor [Bartonella sp. 1-1C]
          Length = 1166

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 131/453 (28%), Positives = 220/453 (48%), Gaps = 20/453 (4%)

Query: 220  WTSPARERLAYDELLA-GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
                 + RL    L   GQ+  +   +  +      +     +  + +   P+  T  Q 
Sbjct: 567  GWQTRKARLKKHLLKIAGQLICIAAERAMRSAP--ALTPPVGLFDEFVACFPYEETDDQM 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  +L D++    M R++ GDVG GKT VA+ +   A   G Q  ++ P  +L++QHY
Sbjct: 625  DAINAVLDDLASGKPMDRLICGDVGFGKTEVAIRSAFVAALNGYQVAVVVPTTLLSRQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +      Q   + +  ++  +      +  + I+ G   I+IGTHAL  DS+ + +L L+
Sbjct: 685  KTFLARFQGLPVKIAHLSRLVKARELAQIKKGISEGTIDIVIGTHALLNDSVSFSRLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  +
Sbjct: 745  IIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRTLSLALSGLRELSLITTPPIDRMAV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T I P + +  + E L      G +++++CP+I +               L  H     
Sbjct: 805  RTFISPFDLM-VIRETLLREYYRGGQSFYVCPRISDLSYVE--------EYLKTHVPEIK 855

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              I HG+M     + +M++F +G   +L++TT+IE G+D+  A+ +I+  AE FGL+ L+
Sbjct: 856  FVIAHGQMPAGQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANTLIVHRAEMFGLSALY 915

Query: 578  QLRGRVGRGEEISSCILLYHP-----PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
            QLRGRVGR ++ +  +  +       P +      L  L     GF +A  D+  R  G 
Sbjct: 916  QLRGRVGRSKQRAYALFTFPSGKVLLPAADRRLKVLQSLDTLGAGFQLASHDMDIRGSGN 975

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            +LG +QSG         EL+  +LE A  + K 
Sbjct: 976  LLGEEQSGHI--KEVGFELYQKMLEEAVAELKD 1006


>gi|294677347|ref|YP_003577962.1| transcription-repair coupling factor [Rhodobacter capsulatus SB
           1003]
 gi|294476167|gb|ADE85555.1| transcription-repair coupling factor [Rhodobacter capsulatus SB
           1003]
          Length = 1148

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 137/450 (30%), Positives = 234/450 (52%), Gaps = 19/450 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    QIA  LMR   +        +       +      P++ T
Sbjct: 534 DKLGGGAWQAKKAKLKERIRQIADRLMRIAAERLLRPAPILEAAHHDWEAFAARFPYTET 593

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q +AI+D++ D++    M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA
Sbjct: 594 DDQMAAIEDVVTDLAAGRPMDRLVVGDVGFGKTEVAMRAAFVAASSGMQVAVIAPTTLLA 653

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH +   +  + T + V+ ++  +         + +A G   I+IGTHA+    +++  
Sbjct: 654 RQHAKTFIERFRGTPLTVKPLSRFVSAKEANATRDGLADGTVDIVIGTHAVLAKGVKFRN 713

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGVQ + +L +  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 714 LGLLIIDEEQHFGVQHKERLKEMRSEIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVD 773

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P+I +  E          + L  H 
Sbjct: 774 RLAIRTYVSEFDTV-TIREALLREHYRGGQSFYVVPRISDLAEVE--------DFLRSHV 824

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++  A+ FGL
Sbjct: 825 PEVSFIVAHGQMAAGELDDRMNAFYDGKHDVLLATTIVESGLDIPTANTMVVHRADMFGL 884

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
           +QL+Q+RGRVGR +  + C L   P  PL+  +  RL +L + ++   GF +A +DL  R
Sbjct: 885 SQLYQIRGRVGRSKLRAYCYLTTKPRLPLTPQATKRLRLLGSLDNLGAGFSLASQDLDLR 944

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             G +LG +QSG         EL+ ++LE 
Sbjct: 945 GAGNLLGEEQSGHI--KEVGYELYQAMLEE 972


>gi|116669806|ref|YP_830739.1| transcription-repair coupling factor [Arthrobacter sp. FB24]
 gi|116609915|gb|ABK02639.1| transcription-repair coupling factor [Arthrobacter sp. FB24]
          Length = 1222

 Score =  323 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 131/483 (27%), Positives = 227/483 (46%), Gaps = 17/483 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W S   +     + +AG++  L          G     +    +++    P+  T  Q 
Sbjct: 620  DWASTKSKARKAVKEIAGELIRLY--SARMASKGFAFGPDTPWQRELEEAFPYVETPDQL 677

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM ++  M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LAQQHY
Sbjct: 678  TTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHY 737

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +      + V+ ++        ++  E + +G   ++IGTH L      +  L LV
Sbjct: 738  ETFTERFSGFPLRVKPLSRFQASKEAKETAEGVKNGSVDVVIGTHRLLSKDFAFKDLGLV 797

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +  T   VL M+ATPIPRTL ++  G  + S +   P  R P+
Sbjct: 798  IVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPV 857

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     +    ++  L    + +++  ++   +         +   L     + +
Sbjct: 858  LTYVGPYTD-KQTSAAIRRELMREGQVFFVHNRVSSIE-----RTAAKIRELVPE--ARV 909

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS+   E ++  F      +L+ TT+IE G+D+ +A+ +I++ A+ +GL+QLHQ
Sbjct: 910  EVAHGQMSESRLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDGADKYGLSQLHQ 969

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY    PL + +  RL  +    +   G  +A +DL+ R  G +
Sbjct: 970  LRGRVGRGRERAYAYFLYPSEKPLGEVALERLKAVAAHNELGAGMQLAMKDLEIRGAGNL 1029

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +QSG         +L+  L+  A  D +    +      +       L + Y   E 
Sbjct: 1030 LGGEQSGHI--QGVGFDLYIRLVGEAVADFRGEAEEKAAEMKIELPVNAHLPHDYVPGER 1087

Query: 694  FQF 696
             + 
Sbjct: 1088 LRL 1090


>gi|284989494|ref|YP_003408048.1| transcription-repair coupling factor [Geodermatophilus obscurus DSM
            43160]
 gi|284062739|gb|ADB73677.1| transcription-repair coupling factor [Geodermatophilus obscurus DSM
            43160]
          Length = 1179

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 136/459 (29%), Positives = 235/459 (51%), Gaps = 18/459 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +A ++  L          G     +    +++    PF  T  Q 
Sbjct: 575  DWQKTKGQARRAVKQIAAELIRLY--SARMATRGHAYGPDTVWQRELEDAFPFQETPDQL 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM     M RI+ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH+
Sbjct: 633  AAIDEVKTDMQHPVPMDRIICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLANQHF 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V++++    +A  R+ L R+A G+  +++GTH L Q + ++  L LV
Sbjct: 693  KTFSERFAQFPVTVQVLSRFQSEAESREILRRLADGEIDVLVGTHRLLQPTTRFKDLGLV 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L    TA  VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 753  IVDEEQRFGVEHKEYLKTMRTAVDVLSMSATPIPRTLEMSLTGIREMSTILTPPEERHPV 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   ++   ++  L    + + I  +++            +  +L     + +
Sbjct: 813  LTYVGAWDD-KQMAAAIRRELLRDGQVFVIHNRVQSID-----KAAAKIRNLVPE--ARV 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M + + E +M  F      +L+ATT++E G+D+ +A+ +I++ A+ FGL+QLHQ
Sbjct: 865  AVGHGQMREHELERIMVGFWEKEYDVLVATTIVESGLDIPNANTLIVDRADTFGLSQLHQ 924

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            +RGRVGRG E +     Y P  PL++ S  RL+ + +  D   G  +A +DL+ R  G +
Sbjct: 925  IRGRVGRGRERAYAYFTYDPSRPLTETSVDRLTTIAHNTDLGAGMAVAMKDLEIRGSGNL 984

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK-HILTQDP 671
            LG +QSG         +L+  L+  A  D +  +  ++P
Sbjct: 985  LGGEQSGHI--AGVGFDLYVRLVGEAVTDYRAQLNGEEP 1021


>gi|161620641|ref|YP_001594527.1| transcription-repair coupling factor [Brucella canis ATCC 23365]
 gi|260568134|ref|ZP_05838603.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|161337452|gb|ABX63756.1| transcription-repair coupling factor [Brucella canis ATCC 23365]
 gi|260154799|gb|EEW89880.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 1170

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 136/477 (28%), Positives = 232/477 (48%), Gaps = 31/477 (6%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKK 249
            +LL +                    D       + R A  +    +IA  L++   + + 
Sbjct: 553  ELLSRYGLEGSDAVL----------DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQM 602

Query: 250  EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 +     +  +     P+  T  Q +AI+ +  D++Q   M R++ GDVG GKT V
Sbjct: 603  RGAPVMTPPDGLYAEFAARFPYDETDDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEV 662

Query: 310  ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            AL A   A  +G Q  ++ P  +L++QH++          I V   +  +         +
Sbjct: 663  ALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPINVAHASRLVGAKELAATKK 722

Query: 370  RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             +  G   I++GTHAL   SI++  L L+I+DE+  FGV+ + +L +  +  HVL ++AT
Sbjct: 723  GLEEGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSAT 782

Query: 430  PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            PIPRTL L   G  ++S IT  P  R  ++T + P +    + E L      G +++++ 
Sbjct: 783  PIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPF-VIRETLLRERYRGGQSFYVV 841

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            P+I +  +            L EH     +A+ HG+M+    + +M++F +G   +L++T
Sbjct: 842  PRIADLTDIE--------EFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 549  TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSY 605
            T++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR  +  +  L   P    L++ + 
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAE 952

Query: 606  TRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             RL VL++ +    GF +A  D+  R  G +LG +QSG         EL+  +LE A
Sbjct: 953  RRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 1007


>gi|306823175|ref|ZP_07456551.1| transcription-repair coupling factor [Bifidobacterium dentium ATCC
            27679]
 gi|309801612|ref|ZP_07695733.1| transcription-repair coupling factor [Bifidobacterium dentium
            JCVIHMP022]
 gi|304553807|gb|EFM41718.1| transcription-repair coupling factor [Bifidobacterium dentium ATCC
            27679]
 gi|308221744|gb|EFO78035.1| transcription-repair coupling factor [Bifidobacterium dentium
            JCVIHMP022]
          Length = 1173

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 226/452 (50%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G     +    +++    P+  T  Q 
Sbjct: 572  DWAATKAKARKHVHEIAEDLVKLYSARQR--TPGYAFGKDTPWQKELEDAFPYQETADQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+   Q  ++ P  +L QQH+
Sbjct: 630  TTIDEVKSDMERSVPMDRLICGDVGFGKTEIAVRAAFKAVQDSKQVAVLVPTTLLVQQHF 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++           +  +  G   ++IGTH L    I++  L LV
Sbjct: 690  ETFTERYEGFPVNVAAMSRFQTAKEINDTITGLEDGTVDVVIGTHKLLNPKIKFKDLGLV 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 750  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       ++   ++  L  G + +++  +++     +  SV  + + L     + +
Sbjct: 810  LTYVGAYED-AQITAAVRRELLRGGQVFYVHNRVQ-----DIASVAAKIHELVPE--AHV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 862  GIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 921

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 922  LRGRVGRGRERAYAYFLYDPAKPMTQQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 982  LGDEQSGHIE--GVGFDLYVRMVSEAVEQYKE 1011


>gi|219684175|ref|ZP_03539119.1| transcription-repair coupling factor [Borrelia garinii PBr]
 gi|219672164|gb|EED29217.1| transcription-repair coupling factor [Borrelia garinii PBr]
          Length = 1124

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 144/452 (31%), Positives = 236/452 (52%), Gaps = 20/452 (4%)

Query: 207 NIIHNPRKAK-DFEWTSPARERLAYDELLAGQIALLL--MRKQFKKEIGIPINVEGKIAQ 263
            I  NP+  K D   +    +  A  +    +IA  L  +  + +   GI    + ++  
Sbjct: 514 YIGSNPKNIKLDKISSKTWIKNKANAKKRIDEIADKLIELYSKRESIKGIKYPEDNELQL 573

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
                 P+  T  Q +AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q
Sbjct: 574 LFESEFPYDETLDQITAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQ 633

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++++P  ILA+QH+   KK  +N  + +E+++  +     ++ L+ +  G+  IIIGTH
Sbjct: 634 VIVLSPTTILAEQHFNTFKKRFKNFPVKIEVLSRFIKNNSEKRILKELKSGEIDIIIGTH 693

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            +         L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   
Sbjct: 694 KILSKKFTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLSLSATPIPRSLHMSLIKLR 753

Query: 444 DISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           DIS +   P  R  I+  +   +   I   IE     LS   + + +   IEE      +
Sbjct: 754 DISVLKIPPKNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--HYLK 808

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           +++E+         + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+
Sbjct: 809 TLIEKLT-----PYARIAIIHGKLTGDEIENIMHNFIKKAYQILLATTIIENGIDIPNAN 863

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED--- 616
            III NA  FGLAQL+QL+GRVGRG + +    LY     L+++S  RL  +    D   
Sbjct: 864 TIIINNANKFGLAQLYQLKGRVGRGSKKAYAYFLYQDSEKLNESSIERLRAITEFSDLGA 923

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
           GF IA +D++ R  G +LG +Q G  + +   
Sbjct: 924 GFKIAMKDMEIRGVGNLLGREQHGEIESIGLD 955


>gi|163844731|ref|YP_001622386.1| transcription-repair coupling factor [Brucella suis ATCC 23445]
 gi|163675454|gb|ABY39564.1| transcription-repair coupling factor [Brucella suis ATCC 23445]
          Length = 1170

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 136/477 (28%), Positives = 233/477 (48%), Gaps = 31/477 (6%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKK 249
            +LL +                    D       + R A  +    +IA  L++   + + 
Sbjct: 553  ELLSRYGLEGSDAVL----------DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQM 602

Query: 250  EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 +     +  +     P+  T  Q +AI+ +  D++Q   M R++ GDVG GKT V
Sbjct: 603  RGAPVMTPPDGLYAEFAARFPYDETDDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEV 662

Query: 310  ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            AL A   A  +G Q  ++ P  +L++QH++          I V   +  +         +
Sbjct: 663  ALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPINVAHASRLVGAKELAATKK 722

Query: 370  RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             +  G   I++GTHAL   SI++  L L+I+DE+  FGV+ + +L +  +  HVL ++AT
Sbjct: 723  GLEEGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSAT 782

Query: 430  PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            PIPRTL L   G  ++S IT  P  R  ++T + P + +  + E L      G +++++ 
Sbjct: 783  PIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVV 841

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            P+I +  +            L EH     +A+ HG+M+    + +M++F +G   +L++T
Sbjct: 842  PRIADLTDIE--------EFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 549  TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSY 605
            T++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR  +  +  L   P    L++ + 
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAE 952

Query: 606  TRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             RL VL++ +    GF +A  D+  R  G +LG +QSG         EL+  +LE A
Sbjct: 953  RRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 1007


>gi|218191448|gb|EEC73875.1| hypothetical protein OsI_08657 [Oryza sativa Indica Group]
          Length = 541

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 168/476 (35%), Positives = 270/476 (56%), Gaps = 36/476 (7%)

Query: 241 LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           LL++ +  +   +  +    +A+K+L+ +P+  T SQ +A+K+I+ D+ +   M R+LQG
Sbjct: 58  LLLKCKNHELNAVGADEWSPLARKLLKVLPYLLTPSQLNAVKEIIWDLRRPVPMNRLLQG 117

Query: 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-----QIIVEII 355
           DVG GKT+VA +A    + +G QA  M P  +LA QHYE +    +       +  + ++
Sbjct: 118 DVGCGKTVVAFLACMEVISSGFQAAFMVPTEVLALQHYEHLTSLLEKFDGDECKPNIALL 177

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL- 414
           TG+      R     +  G+  ++IGTH+L  D  ++  L + ++DEQ RFGV QR +  
Sbjct: 178 TGSTSTRESRIIRNGLKTGEIAMVIGTHSLIGDKTEFSALRISVIDEQQRFGVVQRGRFN 237

Query: 415 ----------------------TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
                                 ++   APHVL M+ATPIPRTL L   GD+ +++IT+ P
Sbjct: 238 SKLYTPSTKSSDDDTISDENSASEIFMAPHVLAMSATPIPRTLALALYGDMSLTQITDLP 297

Query: 453 AGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNS 509
            GR+PI+T+ +  N    + V + +   L +G K Y + P IEE ++     +    F+S
Sbjct: 298 PGRQPIETLALEGNDAGFESVFQMMSDELVDGGKVYLVYPIIEESEQLPQLHAAKAEFDS 357

Query: 510 LHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           + + F      ++HGRM   +K+  + SF++G  ++L++T VIE+G+DV DAS++++ NA
Sbjct: 358 IKQKFEGYPCGLLHGRMRSDEKDGALSSFRSGETRILLSTQVIEIGVDVPDASMMVVMNA 417

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           E FG++QLHQLRGRVGRGE  S C+ L   P   ++  RL VL+ + DGF +A  DL  R
Sbjct: 418 ERFGISQLHQLRGRVGRGERKSRCVFLCSTP---SALPRLKVLEKSSDGFYLANADLLLR 474

Query: 629 KEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
             G++LG KQSG +P+F IA+ E+  S+L+ A   A ++L    DL    G  + +
Sbjct: 475 GPGDLLGKKQSGHLPEFPIARLEIDGSILQEAHLAALNVLGTSNDLAQFPGLKVEL 530


>gi|23500323|ref|NP_699763.1| transcription-repair coupling factor [Brucella suis 1330]
 gi|23463936|gb|AAN33768.1| transcription-repair coupling factor [Brucella suis 1330]
          Length = 1122

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 136/477 (28%), Positives = 233/477 (48%), Gaps = 31/477 (6%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKK 249
           +LL +                    D       + R A  +    +IA  L++   + + 
Sbjct: 505 ELLSRYGLEGSDAVL----------DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQM 554

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                +     +  +     P+  T  Q +AI+ +  D++Q   M R++ GDVG GKT V
Sbjct: 555 RGAPVMTPPDGLYAEFAARFPYDETDDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEV 614

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           AL A   A  +G Q  ++ P  +L++QH++          I V   +  +         +
Sbjct: 615 ALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPINVAHASRLVGAKELAATKK 674

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +  G   I++GTHAL   SI++  L L+I+DE+  FGV+ + +L +  +  HVL ++AT
Sbjct: 675 GLEEGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSAT 734

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L   G  ++S IT  P  R  ++T + P + +  + E L      G +++++ 
Sbjct: 735 PIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVV 793

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P+I +  +            L EH     +A+ HG+M+    + +M++F +G   +L++T
Sbjct: 794 PRIADLTDIE--------EFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 845

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSY 605
           T++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR  +  +  L   P    L++ + 
Sbjct: 846 TIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAE 904

Query: 606 TRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            RL VL++ +    GF +A  D+  R  G +LG +QSG         EL+  +LE A
Sbjct: 905 RRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 959


>gi|298373454|ref|ZP_06983443.1| transcription-repair coupling factor [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274506|gb|EFI16058.1| transcription-repair coupling factor [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 1109

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 133/457 (29%), Positives = 218/457 (47%), Gaps = 23/457 (5%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             R +    ++    I L  +R + K       + +  +  ++  +  +  T  Q  A  
Sbjct: 503 KERTKTKVKDIARDLIKLYALRLEQKG---FEYSPDSYLQAELEASFVYEDTPDQSKATA 559

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           D+  DM     M R++ GDVG GKT VA+ A   A   G Q  ++ P  ILA QHY+   
Sbjct: 560 DVKTDMQSPKPMDRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVLVPTTILAFQHYKTFA 619

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +  +N  + VE ++        ++ + R+  G+  I+IGTH +    + +  L L+++DE
Sbjct: 620 ERLKNYPVTVEYLSRAKSPKQTKEIISRLREGKIDILIGTHKIANKDVVFKDLGLLVIDE 679

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + +FGV  + KL +       L +TATPIPRTL  + +G  D+S I   P  R P+ T +
Sbjct: 680 EQKFGVSVKEKLKELKANVDTLTLTATPIPRTLQFSLMGARDLSIINTPPPNRYPVVTEL 739

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
           I  +  + + E ++  ++   + +++  +I+       +              + IA+ H
Sbjct: 740 IRFDE-ETIREAIEFEMNRNGQIFFVNNKIQNLYLLQTKIK-------KIVPEARIAVAH 791

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M     E  +  F N    +L+ATTVIE GID+ + + I + NA HFGL+ LHQLRGR
Sbjct: 792 GQMPTTQLEDTIIDFINYDYDILLATTVIESGIDMPNVNTIFVNNANHFGLSDLHQLRGR 851

Query: 583 VGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIK 637
           VGR    + C L+      +S ++  RL  +    D   GF IA +DL  R  G +LG +
Sbjct: 852 VGRSNRKAYCYLITSDMKDVSDDARRRLQAISTFSDLGSGFNIAMQDLDIRGAGNMLGAE 911

Query: 638 QSGMPKFLIAQPELHDSLLEIA-----RKDAKHILTQ 669
           QSG    L    E +  +L  A     R +   I+ +
Sbjct: 912 QSGFIAEL--GYETYQKILGEAVQELHRDEFADIIAE 946


>gi|226227554|ref|YP_002761660.1| transcription-repair coupling factor [Gemmatimonas aurantiaca T-27]
 gi|226090745|dbj|BAH39190.1| transcription-repair coupling factor [Gemmatimonas aurantiaca T-27]
          Length = 1104

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 130/435 (29%), Positives = 225/435 (51%), Gaps = 13/435 (2%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +   +       +  ++  L  R+  K     P   +G   +++  +  F  T  Q  
Sbjct: 516 WKAQREKTRMAILEMTQELLELYARR--KVTTRPPHGADGAWQRQLESSFLFEDTPDQRK 573

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D+ +D+  +  M R+L GDVG GKT +A+ A   AV+ G Q  ++ P  ILA+QH  
Sbjct: 574 ATEDVKRDLEGERPMDRLLVGDVGYGKTEIAIRAAFKAVQGGRQVAVLVPTTILAEQHAR 633

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  +  + VE+++     + +   +E++   Q  I+IGTH L    + +  L L+I
Sbjct: 634 SFGDRLADFPVTVEVMSRFQTASQQAVVVEKLKKKQVDIVIGTHRLLSPDVAFGDLGLII 693

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + +L Q   +  VL +TATPIPRTL  +  G  D++ +   P  R P+ 
Sbjct: 694 VDEEHRFGVKHKERLKQLKLSTDVLTLTATPIPRTLHQSLAGLRDLTLMQTAPRDRSPVL 753

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T + P +    + E +   L  G + +++  +IE  +      + +    +     + +A
Sbjct: 754 TFVEPFDD-ALIEEAISRELDRGGQVFFVHNRIETIEA-----IADHLRRIVPR--ARVA 805

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M + + E VM  F  G   +L++T ++E G+DV +A+ + +  A+H GLAQL+QL
Sbjct: 806 VGHGQMKERELEKVMRQFVEGEVDILVSTLIVESGLDVPNANTMFVNRADHLGLAQLYQL 865

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGI 636
           RGRVGR    + C LL    + +++  RL+VL++  +   G+ +A +DL+ R  G +LG 
Sbjct: 866 RGRVGRSHRRAYCFLLVPDRVDEDAERRLAVLEHHTELGAGYRVALKDLELRGAGNLLGP 925

Query: 637 KQSGMPKFLIAQPEL 651
           +QSG    +     L
Sbjct: 926 EQSGFVHAVGFDLYL 940


>gi|187250582|ref|YP_001875064.1| transcription-repair coupling factor [Elusimicrobium minutum
           Pei191]
 gi|186970742|gb|ACC97727.1| Transcription-repair coupling factor [Elusimicrobium minutum
           Pei191]
          Length = 1044

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 141/485 (29%), Positives = 237/485 (48%), Gaps = 42/485 (8%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P  +          +R   +        +L M          P+  + ++  +   + P+
Sbjct: 414 PPLSHLGGVAWKEVKRRVKEAAQKDAEEILKMEALRSAANAKPLTGDAQLEAEFADSFPY 473

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q  AI +IL D++++  M R+L GDVG GKT VA+ A+     +  Q +++ P  
Sbjct: 474 IQTPDQSQAISEILDDLTRQKTMDRVLVGDVGFGKTEVAMRAVMRTALSSKQVLVLVPTT 533

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA QHY+   K   +  + VE+++    +A ++  +E+I  G   I++GTH L    I 
Sbjct: 534 ILAAQHYKTFVKRMASFPVSVEMLSRFQTKAEQKIIVEKIRKGTVDIVVGTHRLLSKDIS 593

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L LVI+DE+HRFGV+Q+ K+  K    H L+++ATPIPRTL  +     ++S I   
Sbjct: 594 FANLGLVIIDEEHRFGVKQKEKIKAKTAGVHTLMLSATPIPRTLNQSLSSLRNLSLIETP 653

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P GR P+KT++ P N  D     ++  +  G + Y++  +++  +     S +E    L 
Sbjct: 654 PQGRMPVKTIVTPWNN-DLAANAVRQEIGRGGQVYFVYNRVQSME-----SRLELLKRLV 707

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
               + I + HG+M++   E  + +F N    +L+A+T+IE G+D+ +A+ +IIE+A+ F
Sbjct: 708 PE--ARICMAHGQMNETALEKTLWAFYNHEYDILLASTIIESGLDISNANTLIIESAQDF 765

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPL-----------------------------SK 602
           GLAQL+QLRGR+GRG+  + C L +   L                             ++
Sbjct: 766 GLAQLYQLRGRIGRGDRKAYCYLFHPDWLFQKPKDNIERENNFEDLKAFLTKKKEADPTE 825

Query: 603 NSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +  RLS L        GF +A  D++ R  GE+LG +Q G          L+  ++   
Sbjct: 826 TAKKRLSALMEFSELGSGFKLALRDMEIRGAGELLGTRQHGFAN--EVGLSLYCDMVAAE 883

Query: 660 RKDAK 664
            K  K
Sbjct: 884 VKKLK 888


>gi|239833942|ref|ZP_04682270.1| transcription-repair coupling factor [Ochrobactrum intermedium LMG
            3301]
 gi|239822005|gb|EEQ93574.1| transcription-repair coupling factor [Ochrobactrum intermedium LMG
            3301]
          Length = 1171

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 136/452 (30%), Positives = 231/452 (51%), Gaps = 21/452 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    +IA  L++   + +      +     +  +     P+  T
Sbjct: 568  DKLGGGAWQMRKAKLKKRLLEIAGQLIQIAAERQMRGAPVMTPPDGLYAEFAARFPYDET 627

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q +AI+ +  D++    M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L+
Sbjct: 628  DDQLTAIESVADDLAAGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLS 687

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++   K      I V   +  +       A + +  G   I++GTHAL  +SI++  
Sbjct: 688  RQHFKTFSKRFHGLPINVAHASRLVGTKELAAAKKGLEDGTVDIVVGTHALLGNSIKFKN 747

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 748  LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 807

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +++++CP+I +  E            L  H 
Sbjct: 808  RMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVCPRISDLGEIE--------EFLKTHV 858

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 859  PELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGL 918

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  +  +  L   P    L++ +  RL VL++ +    GF +A  D+  
Sbjct: 919  AQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDI 977

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G +LG +QSG         EL+  +LE A
Sbjct: 978  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 1007


>gi|330465805|ref|YP_004403548.1| transcription-repair coupling factor [Verrucosispora maris AB-18-032]
 gi|328808776|gb|AEB42948.1| transcription-repair coupling factor [Verrucosispora maris AB-18-032]
          Length = 1232

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 140/437 (32%), Positives = 223/437 (51%), Gaps = 16/437 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
              S AR R A  E+ A  I L   RK  K         +    +++    P+  T  Q +
Sbjct: 626  QKSKARARKAVKEIAAQLIQLYAARKASKGHN---FGPDTPWQRELEDAFPWQETPDQLA 682

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI ++ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQHY 
Sbjct: 683  AIDEVKRDMEQSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYN 742

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +      + +  ++         + LE +A+G A I+IGTH L   S ++  L LVI
Sbjct: 743  TFAERMSQFPVTIRQLSRFQTPKEAEQTLEMVANGSADIVIGTHRLLAASTRFKSLGLVI 802

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+ RFGV+ +  L     A  VL M+ATPIPRTL +   G  ++S I   P  R P+ 
Sbjct: 803  VDEEQRFGVEHKEHLKSMRAAVDVLSMSATPIPRTLEMAITGIREMSTIATPPEERHPVL 862

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T +   +   +V   +   L    + +++  ++E  + +  +        L     + +A
Sbjct: 863  TAVGAYDDR-QVAAAIHRELLRDGQVFYLHNRVESIERTARK-----LRELVPE--ARVA 914

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M +   E VM  F      +L+ TT++E GID+ +A+ +I+E A+  GLAQLHQ+
Sbjct: 915  VAHGQMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQI 974

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGRG E +    LY P  PL+++++ RL+ +    +   G  +A +DL+ R  G +L
Sbjct: 975  RGRVGRGRERAYAYFLYPPDKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLL 1034

Query: 635  GIKQSGMPKFLIAQPEL 651
            G +QSG  + +     +
Sbjct: 1035 GGEQSGHIEGVGFDLYV 1051


>gi|297566385|ref|YP_003685357.1| transcription factor CarD [Meiothermus silvanus DSM 9946]
 gi|296850834|gb|ADH63849.1| transcription factor CarD [Meiothermus silvanus DSM 9946]
          Length = 988

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 146/474 (30%), Positives = 237/474 (50%), Gaps = 20/474 (4%)

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLA-YDELLAGQIALLLMRKQFK 248
            L  +  P +        +P +       EW     +     +EL A  + L   R+   
Sbjct: 374 YLPVEQLPLLKRHPGTTDDPPRLSSLGKGEWKKAREKAQKDAEELAARMLVLHAKRQATP 433

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
                PI    +    I +N P++ T  QE +++D  +D+     M R++ GDVG GKT 
Sbjct: 434 GRAWAPIP---EWDSLIEKNFPYALTPDQEKSLEDTFRDLEAPRPMDRLISGDVGFGKTE 490

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           VAL A    V  G Q  ++ P  +LA+QH +  K   +   + VE ++    +   ++ L
Sbjct: 491 VALRAAHRVVGHGAQVALLVPTTLLAEQHTQTFKSRFEGLPVRVEGLSRFTSELDEQRIL 550

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             +  G   I+IGTH L    +++  L L+I+DE+HRFGV Q+ ++ + A     L ++A
Sbjct: 551 RDLEAGAVDIVIGTHRLLSGDLRFKDLGLLIIDEEHRFGVAQKERIREIAETVDTLYLSA 610

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL    +G  D+S I   P GRKPI+TV+ P +    V E +   +  G K +++
Sbjct: 611 TPIPRTLYSALVGLKDLSSIQTPPPGRKPIQTVLAPYD-PSLVREAILSEMERGGKVFYV 669

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             ++   +                   + I ++HG+M + D E VM +F  G   +L+AT
Sbjct: 670 HDRVATIQARQRYLEN-------IAPEARIGVVHGQMPEGDIEEVMLAFAEGAFDVLLAT 722

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           T+IE G+D+ +A+ I+IE A+  GLA L+QLRGRVGR ++ +     + P L++ +  RL
Sbjct: 723 TIIESGLDIPEANTIVIERADRLGLAALYQLRGRVGRRDQEAYAYFFHPPRLTEAAERRL 782

Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           S + +  D   G L+AE+D++ R  G +LG +Q G         E++  LL  A
Sbjct: 783 SAIADLSDLGSGHLLAEKDMEIRGVGNLLGPEQHGHI--RAVSLEIYTELLAEA 834


>gi|254702954|ref|ZP_05164782.1| transcription-repair coupling factor [Brucella suis bv. 3 str. 686]
 gi|261753561|ref|ZP_05997270.1| transcription-repair coupling factor [Brucella suis bv. 3 str. 686]
 gi|261743314|gb|EEY31240.1| transcription-repair coupling factor [Brucella suis bv. 3 str. 686]
          Length = 1170

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 135/477 (28%), Positives = 231/477 (48%), Gaps = 31/477 (6%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKK 249
            +LL +                    D       + R A  +    +IA  L++   + + 
Sbjct: 553  ELLSRYGLEGSDAVL----------DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQM 602

Query: 250  EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 +     +  +     P+  T  Q +AI+ +  D++Q   M R++ GDVG GKT V
Sbjct: 603  RGAPVMTPPDGLYAEFAARFPYDETDDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEV 662

Query: 310  ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            AL A   A  +G Q  ++ P  +L++QH++          I V   +  +         +
Sbjct: 663  ALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPINVAHASRLVGAKELAATKK 722

Query: 370  RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             +  G   I++GTHAL   SI++  L L+I+DE+  FGV+ + +L +  +  HVL ++AT
Sbjct: 723  GLEEGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSAT 782

Query: 430  PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            PIPRTL L   G  ++S I   P  R  ++T + P +    + E L      G +++++ 
Sbjct: 783  PIPRTLQLALTGVRELSLIATPPVDRMAVRTFVSPFDPF-VIRETLLRERYRGGQSFYVV 841

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            P+I +  +            L EH     +A+ HG+M+    + +M++F +G   +L++T
Sbjct: 842  PRIADLTDIE--------EFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 549  TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---LSKNSY 605
            T++E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR  +  +  L   P    L++ + 
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAE 952

Query: 606  TRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             RL VL++ +    GF +A  D+  R  G +LG +QSG         EL+  +LE A
Sbjct: 953  RRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 1007


>gi|319404239|emb|CBI77832.1| transcription repair coupling factor [Bartonella rochalimae ATCC
            BAA-1498]
          Length = 1166

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 131/453 (28%), Positives = 220/453 (48%), Gaps = 20/453 (4%)

Query: 220  WTSPARERLAYDELLA-GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
                 + RL    L   GQ+  +   +  +      +     +  + +   P+  T  Q 
Sbjct: 567  GWQTRKARLKKHLLKIAGQLICIAAERATRSAPT--LTPPVGLFDEFVACFPYEETDDQM 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  +L D++    M R++ GDVG GKT VA+ +   A   G Q  ++ P  +L++QHY
Sbjct: 625  DAINAVLDDLASGKPMDRLICGDVGFGKTEVAIRSAFVAALNGYQVAVVVPTTLLSRQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +      Q   + +  ++  +      +  + I+ G   I+IGTHAL  DS+ + +L L+
Sbjct: 685  KTFLARFQGLPVKIAHLSRLVKARELAQIKKGISEGTIDIVIGTHALLNDSVSFSRLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  +
Sbjct: 745  IIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRTLSLALSGLRELSLITTPPIDRMAV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T I P + +  + E L      G +++++CP+I +               L  H     
Sbjct: 805  RTFISPFDLM-VIRETLLREYYRGGQSFYVCPRISDLSYVE--------EYLKTHVPEIK 855

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              I HG+M     + +M++F +G   +L++TT+IE G+D+  A+ +I+  AE FGL+ L+
Sbjct: 856  FVIAHGQMPAGQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANTLIVHRAEMFGLSALY 915

Query: 578  QLRGRVGRGEEISSCILLYHP-----PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
            QLRGRVGR ++ +  +  +       P +      L  L     GF +A  D+  R  G 
Sbjct: 916  QLRGRVGRSKQRAYALFTFPSGKVLLPAADRRLKVLQSLDTLGAGFQLASHDMDIRGSGN 975

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            +LG +QSG         EL+  +LE A  + K 
Sbjct: 976  LLGEEQSGHI--KEVGFELYQKMLEEAVAELKD 1006


>gi|294853624|ref|ZP_06794296.1| transcription-repair coupling factor [Brucella sp. NVSL 07-0026]
 gi|294819279|gb|EFG36279.1| transcription-repair coupling factor [Brucella sp. NVSL 07-0026]
          Length = 1170

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 229/452 (50%), Gaps = 21/452 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    +IA  L++   + +      +     +  +     P+  T
Sbjct: 568  DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQMRGAPVMTPPDGLYAEFAARFPYDET 627

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q +AI+ +  D++Q   M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L+
Sbjct: 628  DDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLS 687

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++          I V   +  +         + +  G   I++GTHAL   SI++  
Sbjct: 688  RQHFKTFSNRFHGLPINVAHASRLVGAKELAATKKGLEEGTVDIVVGTHALLGSSIKFKN 747

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 748  LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 807

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +++++ P+I +  +            L EH 
Sbjct: 808  RMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVVPRIADLTDIE--------EFLKEHV 858

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 859  PELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGL 918

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  +  +  L   P    L++ +  RL VL++ +    GF +A  D+  
Sbjct: 919  AQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDI 977

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G +LG +QSG         EL+  +LE A
Sbjct: 978  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 1007


>gi|218460982|ref|ZP_03501073.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
           Kim 5]
          Length = 825

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 135/459 (29%), Positives = 230/459 (50%), Gaps = 21/459 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + R A  +     +A  L+R   +        +     +  +     P+  T
Sbjct: 224 DKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLTRHAPVLTTPDGLYDEFAARFPYDET 283

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + Q++AI  +  D+     M R++ GDVG GKT VAL A   A   G Q  I+ P  +LA
Sbjct: 284 EDQDNAIDAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAIVVPTTLLA 343

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH++   +  +   + ++  +  +         + +A G+  I++GTHAL    I++  
Sbjct: 344 RQHFKTFSERFRGLPVRIQQASRLVGAKELALTKKEVAEGKTDIVVGTHALLGAGIKFAN 403

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 404 LGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVD 463

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  ++T I P + +  + E L      G +++++CP++ +          +    L    
Sbjct: 464 RMAVRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLADLA--------DVHAFLQSDV 514

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I+  A+ FGL
Sbjct: 515 PELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGL 574

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
           AQL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  
Sbjct: 575 AQLYQLRGRVGRS-KVRAFALFTLPVNKVLTPTADRRLKVLQSLDTLGAGFQLASHDLDI 633

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R  G +LG +QSG         EL+  +LE A  + K +
Sbjct: 634 RGAGNLLGEEQSGHI--KEVGFELYQQMLEEAVAEVKGV 670


>gi|256015355|ref|YP_003105364.1| transcription-repair coupling factor [Brucella microti CCM 4915]
 gi|255998015|gb|ACU49702.1| transcription-repair coupling factor [Brucella microti CCM 4915]
          Length = 1122

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 229/452 (50%), Gaps = 21/452 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + R A  +    +IA  L++   + +      +     +  +     P+  T
Sbjct: 520 DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQMRSAPVMTPPDGLYAEFAARFPYDET 579

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q +AI+ +  D++Q   M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L+
Sbjct: 580 DDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLS 639

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH++          I V   +  +         + +  G   I++GTHAL   SI++  
Sbjct: 640 RQHFKTFSNRFHGLPINVAHASRLVGAKELAATKKGLEEGTVDIVVGTHALLGSSIKFKN 699

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 700 LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 759

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  ++T + P + +  + E L      G +++++ P+I +  +            L EH 
Sbjct: 760 RMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVVPRIADLTDIE--------EFLKEHV 810

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 811 PELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGL 870

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
           AQL+QLRGRVGR  +  +  L   P    L++ +  RL VL++ +    GF +A  D+  
Sbjct: 871 AQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDI 929

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG +QSG         EL+  +LE A
Sbjct: 930 RGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 959


>gi|171743238|ref|ZP_02919045.1| hypothetical protein BIFDEN_02367 [Bifidobacterium dentium ATCC
            27678]
 gi|283455784|ref|YP_003360348.1| transcription-repair coupling factor [Bifidobacterium dentium Bd1]
 gi|171278852|gb|EDT46513.1| hypothetical protein BIFDEN_02367 [Bifidobacterium dentium ATCC
            27678]
 gi|283102418|gb|ADB09524.1| Transcription-repair coupling factor [Bifidobacterium dentium Bd1]
          Length = 1173

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 226/452 (50%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   +   +A  +  L   +Q     G     +    +++    P+  T  Q 
Sbjct: 572  DWAATKAKARKHVHEIAEDLVKLYSARQR--TPGYAFGKDTPWQKELEDAFPYQETADQL 629

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+   Q  ++ P  +L QQH+
Sbjct: 630  TTIDEVKSDMERSVPMDRLICGDVGFGKTEIAVRAAFKAVQDSKQVAVLVPTTLLVQQHF 689

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  +   + V  ++           +  +  G   ++IGTH L    I++  L LV
Sbjct: 690  ETFTERYEGFPVNVAAMSRFQTAKEINDTITGLEDGTVDVVIGTHKLLNPKIKFKDLGLV 749

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL ++ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 750  IIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 809

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       ++   ++  L  G + +++  +++     +  SV  + + L     + +
Sbjct: 810  LTYVGAYED-AQITAAVRRELLRGGQVFYVHNRVQ-----DIASVAAKIHDLVPE--AHV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             I HG+M +   + V+  F +    +L+ TT+IE G+D+ +A+ +I+++A+ FGL+QLHQ
Sbjct: 862  GIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 921

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  P+++ S+ RL+ +        GF +A +DL+ R  G +
Sbjct: 922  LRGRVGRGRERAYAYFLYDPAKPMTQQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG  +      +L+  ++  A +  K 
Sbjct: 982  LGDEQSGHIE--GVGFDLYVRMVSEAVEQYKE 1011


>gi|256157728|ref|ZP_05455646.1| transcription-repair coupling factor [Brucella ceti M490/95/1]
 gi|256253301|ref|ZP_05458837.1| transcription-repair coupling factor [Brucella ceti B1/94]
 gi|261220415|ref|ZP_05934696.1| transcription-repair coupling factor [Brucella ceti B1/94]
 gi|265996234|ref|ZP_06108791.1| transcription-repair coupling factor [Brucella ceti M490/95/1]
 gi|260918999|gb|EEX85652.1| transcription-repair coupling factor [Brucella ceti B1/94]
 gi|262550531|gb|EEZ06692.1| transcription-repair coupling factor [Brucella ceti M490/95/1]
          Length = 1170

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 229/452 (50%), Gaps = 21/452 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    +IA  L++   + +      +     +  +     P+  T
Sbjct: 568  DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQMRGAPVMTPPDGLYAEFAARFPYDET 627

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q +AI+ +  D++Q   M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L+
Sbjct: 628  DDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLS 687

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++          I V   +  +         + +  G   I++GTHAL   SI++  
Sbjct: 688  RQHFKTFSNRFHGLPINVAHASRLVGAKELAATKKGLEEGTVDIVVGTHALLGSSIKFKN 747

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 748  LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 807

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +++++ P+I +  +            L EH 
Sbjct: 808  RMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVVPRIADLTDIE--------EFLKEHV 858

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 859  PELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGL 918

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  +  +  L   P    L++ +  RL VL++ +    GF +A  D+  
Sbjct: 919  AQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDI 977

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G +LG +QSG         EL+  +LE A
Sbjct: 978  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 1007


>gi|148554437|ref|YP_001262019.1| transcription-repair coupling factor [Sphingomonas wittichii RW1]
 gi|148499627|gb|ABQ67881.1| transcription-repair coupling factor [Sphingomonas wittichii RW1]
          Length = 1195

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 142/455 (31%), Positives = 228/455 (50%), Gaps = 17/455 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    +IA  L++   +        I  +     + +   P+  T
Sbjct: 594  DKLGGVAWQARKARMKERIREIAGELIKTAAERALRPAEAIEPDS-GYNEFVDRFPYQET 652

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q+ AI D+++D++    M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA
Sbjct: 653  EDQDRAIADVIEDLAAGKPMDRLVCGDVGFGKTEVALRAAFVAALGGMQVALICPTTLLA 712

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QHY    +      + +  ++  +     ++  + +A G   I+IGTHAL    I + +
Sbjct: 713  RQHYRNFVERFHGMPVNIGHLSRLVSAGEAKRTKDGLADGSIDIVIGTHALLAKGIAFKR 772

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L LVIVDE+ RFGV  + +L    T  H+L +TATPIPRTL +   G  ++S I   P  
Sbjct: 773  LGLVIVDEEQRFGVTHKERLKALKTDVHMLTLTATPIPRTLQMAMSGLRELSVIQTPPVD 832

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +++ + P+I++  +       E         
Sbjct: 833  RLAVRTYVAPWDGV-VIREALLREHYRGGQSFLVTPRIKDLPDIEDYLRKEV-------P 884

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              S  + HG+M+  + E  M +F +    +L++TT+IE G+D+  A+ +I+  A+ FGLA
Sbjct: 885  EVSYVVAHGQMAAGEVEERMSAFYDKKFDILVSTTIIESGLDIPSANTLIVNRADRFGLA 944

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKE 630
            QL+QLRGRVGR +  +   L      L++ +  RL +L+N      GF IA  DL  R  
Sbjct: 945  QLYQLRGRVGRSKTRAYAYLTTGDRGLTETAEKRLHILQNIDTLGAGFQIASHDLDIRGA 1004

Query: 631  GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            G +LG +QSG         EL+ S+LE A  DAK 
Sbjct: 1005 GNLLGDEQSGHI--KEVGFELYQSMLEEAILDAKA 1037


>gi|225629075|ref|ZP_03787108.1| transcription-repair coupling factor [Brucella ceti str. Cudo]
 gi|254705928|ref|ZP_05167756.1| transcription-repair coupling factor [Brucella pinnipedialis
            M163/99/10]
 gi|254711152|ref|ZP_05172963.1| transcription-repair coupling factor [Brucella pinnipedialis B2/94]
 gi|254712390|ref|ZP_05174201.1| transcription-repair coupling factor [Brucella ceti M644/93/1]
 gi|254715462|ref|ZP_05177273.1| transcription-repair coupling factor [Brucella ceti M13/05/1]
 gi|256029533|ref|ZP_05443147.1| transcription-repair coupling factor [Brucella pinnipedialis
            M292/94/1]
 gi|260167377|ref|ZP_05754188.1| transcription-repair coupling factor [Brucella sp. F5/99]
 gi|261217195|ref|ZP_05931476.1| transcription-repair coupling factor [Brucella ceti M13/05/1]
 gi|261313356|ref|ZP_05952553.1| transcription-repair coupling factor [Brucella pinnipedialis
            M163/99/10]
 gi|261318744|ref|ZP_05957941.1| transcription-repair coupling factor [Brucella pinnipedialis B2/94]
 gi|261320066|ref|ZP_05959263.1| transcription-repair coupling factor [Brucella ceti M644/93/1]
 gi|261756785|ref|ZP_06000494.1| transcription repair coupling factor [Brucella sp. F5/99]
 gi|265986542|ref|ZP_06099099.1| transcription-repair coupling factor [Brucella pinnipedialis
            M292/94/1]
 gi|225615571|gb|EEH12620.1| transcription-repair coupling factor [Brucella ceti str. Cudo]
 gi|260922284|gb|EEX88852.1| transcription-repair coupling factor [Brucella ceti M13/05/1]
 gi|261292756|gb|EEX96252.1| transcription-repair coupling factor [Brucella ceti M644/93/1]
 gi|261297967|gb|EEY01464.1| transcription-repair coupling factor [Brucella pinnipedialis B2/94]
 gi|261302382|gb|EEY05879.1| transcription-repair coupling factor [Brucella pinnipedialis
            M163/99/10]
 gi|261736769|gb|EEY24765.1| transcription repair coupling factor [Brucella sp. F5/99]
 gi|264658739|gb|EEZ29000.1| transcription-repair coupling factor [Brucella pinnipedialis
            M292/94/1]
          Length = 1170

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 229/452 (50%), Gaps = 21/452 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    +IA  L++   + +      +     +  +     P+  T
Sbjct: 568  DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQMRGAPVMTPPDGLYAEFAARFPYDET 627

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q +AI+ +  D++Q   M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L+
Sbjct: 628  DDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLS 687

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++          I V   +  +         + +  G   I++GTHAL   SI++  
Sbjct: 688  RQHFKTFSNRFHGLPINVAHASRLVGAKELAATKKGLEEGTVDIVVGTHALLGSSIKFKN 747

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 748  LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 807

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +++++ P+I +  +            L EH 
Sbjct: 808  RMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVVPRIADLTDIE--------EFLKEHV 858

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 859  PELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGL 918

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  +  +  L   P    L++ +  RL VL++ +    GF +A  D+  
Sbjct: 919  AQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDI 977

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G +LG +QSG         EL+  +LE A
Sbjct: 978  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 1007


>gi|56696942|ref|YP_167304.1| transcription-repair coupling factor [Ruegeria pomeroyi DSS-3]
 gi|56678679|gb|AAV95345.1| transcription-repair coupling factor [Ruegeria pomeroyi DSS-3]
          Length = 1142

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 137/451 (30%), Positives = 226/451 (50%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        ++      +      P+  T
Sbjct: 531 DRLGGGAWQAKKAKLKERIREMADRLIRVAAERALRKAPVMDPPPHAWEDFSARFPYQET 590

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI D++ D+     M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA
Sbjct: 591 DDQLRAIGDVMDDLHSGMPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVIAPTTLLA 650

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH    +   +   + V  ++  +     ++  E +A G   I+IGTHAL    I++  
Sbjct: 651 RQHAASFRDRFRGFPLEVRQLSRFISAKEAQQTREGLARGTVDIVIGTHALLAKGIRFQN 710

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 711 LGLLIIDEEQHFGVGHKERLKQLRSDVHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPID 770

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  V E L      G +++++ P+I +  +            L E  
Sbjct: 771 RLAIRTYVSEFDAV-TVREALLREHYRGGQSFYVVPRITDLPDIE--------AFLKEQL 821

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +  + HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +++  A+ FGL
Sbjct: 822 PELTYVVAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFGL 881

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           AQL+Q+RGRVGR +  +   L   P   L+  +  RL VL + +    GF +A +DL  R
Sbjct: 882 AQLYQIRGRVGRSKARAYAYLTTKPRARLTPAAEKRLRVLASLDTLGAGFSLASQDLDIR 941

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG         EL+ S+LE A
Sbjct: 942 GAGNLLGEEQSGQMPD--VGYELYQSMLEEA 970


>gi|220912069|ref|YP_002487378.1| transcription-repair coupling factor [Arthrobacter chlorophenolicus
            A6]
 gi|219858947|gb|ACL39289.1| transcription-repair coupling factor [Arthrobacter chlorophenolicus
            A6]
          Length = 1220

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 131/483 (27%), Positives = 226/483 (46%), Gaps = 17/483 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W S   +     + +AG++  L          G     +    +++    P+  T  Q 
Sbjct: 618  DWASTKSKARKAVKEIAGELIRLY--SARMASRGHAFGPDTPWQRELEEAFPYVETPDQL 675

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM ++  M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LAQQHY
Sbjct: 676  TTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHY 735

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +      + V+ ++        ++  E +  G   ++IGTH L     ++  L LV
Sbjct: 736  ETFTERFSGFPLRVKPLSRFQSAKESKETAEGVKSGAVDVVIGTHRLLSKDFEFKDLGLV 795

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +  T   VL M+ATPIPRTL ++  G  + S +   P  R P+
Sbjct: 796  IVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPV 855

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     +    ++  L    + + +  ++   +         +   L     + +
Sbjct: 856  LTYVGPYTD-KQTSAAIRRELMREGQVFLVHNRVSTIE-----RTAAKIRELVPE--ARV 907

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS+   E ++  F      +L+ TT+IE G+D+ +A+ +I++ A+ +GL+QLHQ
Sbjct: 908  EVAHGKMSESRLEQIIVDFWERRFDVLVCTTIIETGLDISNANTLIVDGADKYGLSQLHQ 967

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY    PL + +  RL  +    +   G  +A +DL+ R  G +
Sbjct: 968  LRGRVGRGRERAYAYFLYPSEKPLGEVALERLKAVAAHNELGAGMQLAMKDLEIRGAGNL 1027

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +QSG         +L+  L+  A  D +    +      +       L + Y   E 
Sbjct: 1028 LGGEQSGHI--QGVGFDLYIRLVGEAVADFRGEAEEKAAEMKIELPVNAHLPHDYVPGER 1085

Query: 694  FQF 696
             + 
Sbjct: 1086 LRL 1088


>gi|15889082|ref|NP_354763.1| transcription-repair coupling factor [Agrobacterium tumefaciens str.
            C58]
 gi|15156884|gb|AAK87548.1| transcription-repair coupling factor [Agrobacterium tumefaciens str.
            C58]
          Length = 1165

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 136/456 (29%), Positives = 229/456 (50%), Gaps = 19/456 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +     +A  L+R            +     +  +     P+  T
Sbjct: 563  DKLGGGAWQMRKAKLKKRLLDMADELIRIAAARLVRHAPALIAPDGLYDEFAARFPYDET 622

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q +AI+ +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA
Sbjct: 623  EDQLNAIEAVRDDLGAGRPMDRLICGDVGFGKTEVALRAAFLAAMNGVQVAVVVPTTLLA 682

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH+    +  +   I V+  +  +         + +A G+  I++GTHAL    I +  
Sbjct: 683  RQHFRTFSERFRGLPIRVQQASRLVGSKELALTKKEVAEGKTDIVVGTHALLGAGISFAN 742

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 743  LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVD 802

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G +++++CP++ +  + +     +         
Sbjct: 803  RMAVRTFISPFDPL-VIRETLMREHYRGGQSFYVCPRLADLADIHAFLQSDV-------P 854

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               +A+ HG+M+  + E +M++F +G   +L++TT++E G+DV  A+ +I+  A+ FGLA
Sbjct: 855  ELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTANTLIVHRADMFGLA 914

Query: 575  QLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            QL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  R
Sbjct: 915  QLYQLRGRVGRS-KVRAFALFTLPVNKVLTTMAERRLKVLQSLDTLGAGFQLASHDLDIR 973

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
              G +LG +QSG         EL+  +LE A  + K
Sbjct: 974  GAGNLLGEEQSGHI--KEVGFELYQQMLEEAVAEVK 1007


>gi|300023171|ref|YP_003755782.1| transcription-repair coupling factor [Hyphomicrobium denitrificans
            ATCC 51888]
 gi|299524992|gb|ADJ23461.1| transcription-repair coupling factor [Hyphomicrobium denitrificans
            ATCC 51888]
          Length = 1161

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 137/457 (29%), Positives = 226/457 (49%), Gaps = 24/457 (5%)

Query: 222  SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            +  ++RL        +IA L   ++        +        + +   P+  T+ Q ++I
Sbjct: 566  AKLKKRLREIANELIKIAALRALREA-----PALVPPTGAYDEFVARFPYEETEDQATSI 620

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            + +L D++    M R++ GDVG GKT VAL A       G Q  ++ P  +LA+QH+   
Sbjct: 621  ESVLADLASGRPMDRLVCGDVGFGKTEVALRAAFVGAMNGLQVAVVVPTTLLARQHFRTF 680

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
             +  Q   + +   +  +      +    +  G   I++GTHAL   +I++ +L L+I+D
Sbjct: 681  TQRFQGLPVKIAQASRMVGAKGLAEVKAGLKSGDIDIVVGTHALLGKTIEFQRLGLLIID 740

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+  FGV  + +L +     HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T 
Sbjct: 741  EEQHFGVNHKERLKKMREDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTF 800

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-AI 520
            I P + +  + E L+     G + Y++ P+I +          +    L E     + A 
Sbjct: 801  ISPFDPV-ILKEALRRERFRGGQTYYVAPRISDLD--------DIAEFLREAVPDLVFAR 851

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
              G+MS  + E VM +F  G   +L++T ++E G+DV +A+ +I+  A+ FGLAQL+QLR
Sbjct: 852  ATGQMSPTELEDVMTAFYEGKYDILLSTAIVESGLDVPNANTLIVHRADMFGLAQLYQLR 911

Query: 581  GRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
            GRVGR +  +   +   P   L++ +  RL VL++ +    GF +A  DL  R  G +LG
Sbjct: 912  GRVGRSKTRAYAYITTPPDKKLTEGAEKRLKVLQSLDTLGAGFSLASHDLDIRGAGNLLG 971

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAK--HILTQD 670
             +QSG         EL+ S+LE A    K   I   D
Sbjct: 972  EEQSGHI--REVGFELYQSMLEEAVAAMKGGEIEADD 1006


>gi|256111504|ref|ZP_05452518.1| transcription-repair coupling factor [Brucella melitensis bv. 3 str.
            Ether]
 gi|265993002|ref|ZP_06105559.1| transcription-repair coupling factor [Brucella melitensis bv. 3 str.
            Ether]
 gi|262763872|gb|EEZ09904.1| transcription-repair coupling factor [Brucella melitensis bv. 3 str.
            Ether]
          Length = 1170

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 229/452 (50%), Gaps = 21/452 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    +IA  L++   + +      +     +  +     P+  T
Sbjct: 568  DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQMRGAPVMTPPDGLYAEFAARFPYDET 627

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q +AI+ +  D++Q   M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L+
Sbjct: 628  DDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLS 687

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++          I V   +  +         + +  G   I++GTHAL   SI++  
Sbjct: 688  RQHFKTFSNRFHGLPINVAHASRLVGAKELAATKKGLEEGTVDIVVGTHALLGSSIKFKN 747

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 748  LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 807

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +++++ P+I +  +            L EH 
Sbjct: 808  RMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVVPRIADLTDIE--------EFLKEHV 858

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 859  PELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGL 918

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  +  +  L   P    L++ +  RL VL++ +    GF +A  D+  
Sbjct: 919  AQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDI 977

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G +LG +QSG         EL+  +LE A
Sbjct: 978  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 1007


>gi|254695633|ref|ZP_05157461.1| transcription-repair coupling factor [Brucella abortus bv. 3 str.
            Tulya]
 gi|254699816|ref|ZP_05161644.1| transcription-repair coupling factor [Brucella suis bv. 5 str. 513]
 gi|261216031|ref|ZP_05930312.1| transcription-repair coupling factor [Brucella abortus bv. 3 str.
            Tulya]
 gi|261750288|ref|ZP_05993997.1| transcription-repair coupling factor [Brucella suis bv. 5 str. 513]
 gi|260917638|gb|EEX84499.1| transcription-repair coupling factor [Brucella abortus bv. 3 str.
            Tulya]
 gi|261740041|gb|EEY27967.1| transcription-repair coupling factor [Brucella suis bv. 5 str. 513]
          Length = 1170

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 229/452 (50%), Gaps = 21/452 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    +IA  L++   + +      +     +  +     P+  T
Sbjct: 568  DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQMRGAPVMTPPDGLYAEFAARFPYDET 627

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q +AI+ +  D++Q   M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L+
Sbjct: 628  DDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLS 687

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++          I V   +  +         + +  G   I++GTHAL   SI++  
Sbjct: 688  RQHFKTFSNRFHGLPINVAHASRLVGAKELAATKKGLEEGTVDIVVGTHALLGSSIKFKN 747

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 748  LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 807

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +++++ P+I +  +            L EH 
Sbjct: 808  RMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVVPRIADLTDIE--------EFLKEHV 858

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 859  PELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGL 918

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  +  +  L   P    L++ +  RL VL++ +    GF +A  D+  
Sbjct: 919  AQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDI 977

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G +LG +QSG         EL+  +LE A
Sbjct: 978  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 1007


>gi|225686365|ref|YP_002734337.1| transcription-repair coupling factor [Brucella melitensis ATCC 23457]
 gi|256262494|ref|ZP_05465026.1| transcription-repair coupling factor Mfd [Brucella melitensis bv. 2
            str. 63/9]
 gi|225642470|gb|ACO02383.1| transcription-repair coupling factor [Brucella melitensis ATCC 23457]
 gi|263092231|gb|EEZ16528.1| transcription-repair coupling factor Mfd [Brucella melitensis bv. 2
            str. 63/9]
 gi|326410736|gb|ADZ67800.1| transcription-repair coupling factor [Brucella melitensis M28]
 gi|326554029|gb|ADZ88668.1| transcription-repair coupling factor [Brucella melitensis M5-90]
          Length = 1170

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 229/452 (50%), Gaps = 21/452 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    +IA  L++   + +      +     +  +     P+  T
Sbjct: 568  DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQMRGAPVMTPPDGLYAEFAARFPYDET 627

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q +AI+ +  D++Q   M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L+
Sbjct: 628  DDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLS 687

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++          I V   +  +         + +  G   I++GTHAL   SI++  
Sbjct: 688  RQHFKTFSNRFHGLPINVAHASRLVGAKELAATKKGLEEGTVDIVVGTHALLGSSIKFKN 747

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 748  LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 807

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +++++ P+I +  +            L EH 
Sbjct: 808  RMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVVPRIADLTDIE--------EFLKEHV 858

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 859  PELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGL 918

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  +  +  L   P    L++ +  RL VL++ +    GF +A  D+  
Sbjct: 919  AQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDI 977

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G +LG +QSG         EL+  +LE A
Sbjct: 978  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 1007


>gi|219685734|ref|ZP_03540546.1| transcription-repair coupling factor [Borrelia garinii Far04]
 gi|219672729|gb|EED29756.1| transcription-repair coupling factor [Borrelia garinii Far04]
          Length = 1124

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 144/452 (31%), Positives = 235/452 (51%), Gaps = 20/452 (4%)

Query: 207 NIIHNPRKAK-DFEWTSPARERLAYDELLAGQIALLL--MRKQFKKEIGIPINVEGKIAQ 263
            I  NP+  K D   +    +  A  +    +IA  L  +  + +   GI    + ++  
Sbjct: 514 YIGSNPKNIKLDKISSKTWIKNKANAKKRIDEIADKLIELYSKRESIKGIKYPEDNELQL 573

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
                 P+  T  Q +AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q
Sbjct: 574 LFESEFPYDETLDQITAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQ 633

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++++P  ILA+QH+   KK  +N  + +E+++  +     ++ L+ +  G+  IIIGTH
Sbjct: 634 VIVLSPTTILAEQHFNTFKKRFKNFPVKIEVLSRFIKNNSEKRILKELKSGEIDIIIGTH 693

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            +         L L+I+DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   
Sbjct: 694 KILSKKFTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLSLSATPIPRSLHMSLIKLR 753

Query: 444 DISKITEKPAGRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           DIS +   P  R  I+  +   +   I   IE     LS   + + +   IEE      +
Sbjct: 754 DISVLKIPPKNRVKIEAYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--HYLK 808

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           +++E+         + IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+
Sbjct: 809 TLIEKLT-----PYARIAIIHGKLTGDEIENIMHNFIKKAYQILLATTIIENGIDIPNAN 863

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED--- 616
            III NA  FGLAQL+QL+GRVGRG + +    LY     L++ S  RL  +    D   
Sbjct: 864 TIIINNANKFGLAQLYQLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSDLGA 923

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
           GF IA +D++ R  G +LG +Q G  + +   
Sbjct: 924 GFKIAMKDMEIRGVGNLLGREQHGEIESIGLD 955


>gi|256059228|ref|ZP_05449434.1| transcription-repair coupling factor [Brucella neotomae 5K33]
 gi|261323178|ref|ZP_05962375.1| transcription-repair coupling factor [Brucella neotomae 5K33]
 gi|261299158|gb|EEY02655.1| transcription-repair coupling factor [Brucella neotomae 5K33]
          Length = 1170

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 229/452 (50%), Gaps = 21/452 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    +IA  L++   + +      +     +  +     P+  T
Sbjct: 568  DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQMRGAPVMTPPDGLYAEFAARFPYDET 627

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q +AI+ +  D++Q   M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L+
Sbjct: 628  DDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLS 687

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++          I V   +  +         + +  G   I++GTHAL   SI++  
Sbjct: 688  RQHFKTFSNRFHGLPINVAHASRLVGAKELAATKKGLEEGTVDIVVGTHALLGSSIKFKN 747

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 748  LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 807

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +++++ P+I +  +            L EH 
Sbjct: 808  RMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVVPRIADLTDIE--------EFLKEHV 858

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 859  PELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGL 918

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  +  +  L   P    L++ +  RL VL++ +    GF +A  D+  
Sbjct: 919  AQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDI 977

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G +LG +QSG         EL+  +LE A
Sbjct: 978  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 1007


>gi|319405678|emb|CBI79301.1| transcription repair coupling factor [Bartonella sp. AR 15-3]
          Length = 1166

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 130/453 (28%), Positives = 221/453 (48%), Gaps = 20/453 (4%)

Query: 220  WTSPARERLAYDELLA-GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
                 + RL    L   GQ+  +   +  +      +     +  + +   P+  T  Q 
Sbjct: 567  GWQTRKARLKKHLLKIAGQLICIAAERATRSAP--ALTPPAGLFDEFVACFPYEETDDQM 624

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             AI  +L D++    M R++ GDVG GKT VA+ +   A   G Q  ++ P  +L++QHY
Sbjct: 625  DAINAVLDDLASGKPMDRLICGDVGFGKTEVAIRSAFVAALNGYQVAVVVPTTLLSRQHY 684

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +      Q   + +  ++  +      +  + I+ G   I+IGTHAL  D++ + +L L+
Sbjct: 685  KTFMVRFQGLPVKIAHLSRLVKPKELAQIKKGISEGTIDIVIGTHALLNDTVSFSRLGLL 744

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  +
Sbjct: 745  IIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRTLSLALSGLRELSLITTPPIDRMAV 804

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            +T I P + +  + E L      G +++++CP+I +               L  H     
Sbjct: 805  RTFISPFDVM-VIRETLLREYYRGGQSFYVCPRISDLSYVE--------EYLKTHVPELK 855

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              I HG+M     + +M++F +G   +L++TT+IE G+D+  A+ +I+  AE FGL+ L+
Sbjct: 856  FIIAHGQMPAGQLDDIMNAFYDGQYNVLLSTTIIESGLDIPTANTLIVHRAEMFGLSALY 915

Query: 578  QLRGRVGRGEEISSCILLYHP-----PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
            QLRGRVGR ++ +  +  +       P++      L  L     GF +A  D+  R  G 
Sbjct: 916  QLRGRVGRSKQRAYALFTFPSGKVLLPVADRRLKVLQSLDTLGAGFQLASHDMDIRGSGN 975

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            +LG +QSG         EL+  +LE A  + K 
Sbjct: 976  LLGEEQSGHI--KEVGFELYQKMLEEAVAELKD 1006


>gi|299133932|ref|ZP_07027126.1| transcription-repair coupling factor [Afipia sp. 1NLS2]
 gi|298591768|gb|EFI51969.1| transcription-repair coupling factor [Afipia sp. 1NLS2]
          Length = 1172

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 138/443 (31%), Positives = 224/443 (50%), Gaps = 19/443 (4%)

Query: 224  ARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
             + R A  +    +IA  L++   + +        V   +  +     P   T+ Q  AI
Sbjct: 572  WQARKAKLKNRIREIAGDLIKVAAERQLHEAPKFPVHQGLYDEFCARFPHDETEDQLGAI 631

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
               L D++    M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA+QH +  
Sbjct: 632  NASLDDLNAGKPMDRLVCGDVGFGKTEVALRAAFAVALEGRQVAVVVPTTLLARQHAKNF 691

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
             +  +   + V   +  +     R+  + +A G   I++GTHAL   +I++  L L+IVD
Sbjct: 692  TERFRGFPVKVAQASRLVSAKELRETKKGMADGSVDIVVGTHALLGKTIKFKNLGLIIVD 751

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+  FGV  + +L Q     HVL ++ATPIPRTL L   G  D+S I   P  R  ++T 
Sbjct: 752  EEQHFGVSHKERLKQLRAEVHVLTLSATPIPRTLQLALTGVRDLSIIASPPVDRLAVRTF 811

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            + P + +  + E L      G +A+++CP+I++  E+                   +A+ 
Sbjct: 812  VAPFDPL-MIREALLRERYRGGQAFYVCPRIDDLAEAKDFLDKNVPEM-------KVAVA 863

Query: 522  HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            HG+M     E +M +F +G   +L++TT++E G+D+ +A+ +I+  A+ FGLAQL+QLRG
Sbjct: 864  HGQMPPSVIEDIMSAFYDGKFDILLSTTIVESGLDIPNANTLIVHRADMFGLAQLYQLRG 923

Query: 582  RVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILG 635
            RVGR  ++ +  L   P    ++  +  RL VL++ E+   GF +A  DL  R  G +LG
Sbjct: 924  RVGRS-KLRAYALFTLPAQRQITAQAERRLKVLQSLENLGAGFQLASHDLDIRGSGNLLG 982

Query: 636  IKQSGMPKFLIAQPELHDSLLEI 658
             +QSG         EL+  +LE 
Sbjct: 983  EEQSGHI--KEVGFELYQQMLEE 1003


>gi|254720434|ref|ZP_05182245.1| transcription-repair coupling factor [Brucella sp. 83/13]
 gi|265985454|ref|ZP_06098189.1| transcription-repair coupling factor [Brucella sp. 83/13]
 gi|306838989|ref|ZP_07471810.1| transcription-repair coupling factor [Brucella sp. NF 2653]
 gi|264664046|gb|EEZ34307.1| transcription-repair coupling factor [Brucella sp. 83/13]
 gi|306405895|gb|EFM62153.1| transcription-repair coupling factor [Brucella sp. NF 2653]
          Length = 1171

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 229/452 (50%), Gaps = 21/452 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    +IA  L++   + +      +     +  +     P+  T
Sbjct: 569  DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQMRGAPVMTPPDGLYAEFAARFPYDET 628

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q +AI+ +  D++Q   M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L+
Sbjct: 629  DDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLS 688

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++          I V   +  +         + +  G   I++GTHAL   SI++  
Sbjct: 689  RQHFKTFSNRFHGLPINVAHASRLVGTKELAATKKGLEEGTVDIVVGTHALLGSSIKFKN 748

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 749  LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 808

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +++++ P+I +  +            L EH 
Sbjct: 809  RMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVVPRIADLTDIE--------EFLKEHV 859

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 860  PELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGL 919

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  +  +  L   P    L++ +  RL VL++ +    GF +A  D+  
Sbjct: 920  AQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDI 978

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G +LG +QSG         EL+  +LE A
Sbjct: 979  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 1008


>gi|163868353|ref|YP_001609562.1| transcription repair coupling factor [Bartonella tribocorum CIP
            105476]
 gi|161018009|emb|CAK01567.1| transcription repair coupling factor [Bartonella tribocorum CIP
            105476]
          Length = 1166

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 133/457 (29%), Positives = 227/457 (49%), Gaps = 19/457 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    ++A  L+R   +        +     +  + +   P+  T
Sbjct: 561  DKLGGVAWQARKARLKKHLLEMAGQLIRIAAERVTRAAPALLPPVGLFDEFVACFPYEET 620

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q +AI  +L D++    M R++ GDVG GKT VA+ +   A   G Q  ++ P  +L+
Sbjct: 621  EDQINAIDAVLDDLASGKPMDRLICGDVGFGKTEVAIRSAFVAALNGYQVAVVVPTTLLS 680

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QHY+      Q   + +   +  +      +  + I+ G   I+IGTHAL   +I + +
Sbjct: 681  RQHYKTFISRFQGLPVKIGHASRLVKTKEIAQVKKGISDGTIDIVIGTHALLSGAINFLR 740

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 741  LGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRTLGLALSGVRELSLITTPPVD 800

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G +++++CP+I +               L  H 
Sbjct: 801  RMAVRTFISPFDAL-VIRETLLREYYRGGQSFYVCPRISDLAFVE--------EYLKTHV 851

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  I HG+M     + +M++F +G   +L++TT+IE G+D+  A+ +I+  AE FGL
Sbjct: 852  PELKFVIAHGQMPAGQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANTLIVHRAEMFGL 911

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            + L+QLRGRVGR ++ +  +  +     L+  +  RL VL++ +    GF +A  D+  R
Sbjct: 912  SALYQLRGRVGRSKQRAYALFTFPSGKVLTPAADRRLKVLQSLDTLGAGFQLASHDMDIR 971

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
              G  LG +QSG         EL+  +LE A  + K 
Sbjct: 972  GSGNFLGEEQSGHI--KEVGFELYQKMLEEAVAELKD 1006


>gi|34763024|ref|ZP_00144000.1| Transcription-repair coupling factor [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887325|gb|EAA24419.1| Transcription-repair coupling factor [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 805

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 140/441 (31%), Positives = 246/441 (55%), Gaps = 12/441 (2%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             ++    +++      ++ ++ +     G   + +  + ++     PF+ T +Q  AI+
Sbjct: 229 KRKKDKLSEDIEIFAKEIIKIQAKRNLGNGFKFSKDTVMQEEFEETFPFTETPAQLKAIE 288

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           D+ +DM     M R++ GDVG GKT VA+ A   AV  G Q +++ P  +LA+QHYE   
Sbjct: 289 DVKRDMESGKIMDRLICGDVGYGKTEVAIRATFKAVMDGKQVILLVPTTVLAEQHYERFS 348

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +  +N  + +EI++    +  + ++L+RI +G A ++IGTH L  D I++  + L+I+DE
Sbjct: 349 ERFKNYPVHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDDIKFKDVGLLIIDE 408

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + +FGV+ + KL +      VL +TATPIPRTL L+ LG  D+S I   P GR+ I+T  
Sbjct: 409 EQKFGVKAKEKLKKIKGDLDVLTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIQTEY 468

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
           I  N+ + + + +   +S   + ++I   ++  +     S V+    L   +   ++ IH
Sbjct: 469 IDNNK-NLIKDIILSEISREGQVFYIFNSVKRIE-----SKVKEIRELLPEYI-KVSYIH 521

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M   D +  +  F+NG   +L+ATT+IE GID+ +A+ +IIE  E  GL+Q++QLRGR
Sbjct: 522 GQMLPRDIKKNIQEFENGNVDVLVATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGR 581

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDLKQRKEGEILGIKQSG 640
           +GR  + S C +L +   +KN+  R   ++  ++  G  +A ED K R  GEILG KQ G
Sbjct: 582 IGRSTKKSYCYMLMNENKTKNAKKREESIREFDNLTGIDLAMEDSKIRGVGEILGEKQHG 641

Query: 641 MPK---FLIAQPELHDSLLEI 658
             +   + +    L++ +L++
Sbjct: 642 AVETFGYNLYMKMLNEEILKL 662


>gi|225551744|ref|ZP_03772687.1| transcription-repair coupling factor [Borrelia sp. SV1]
 gi|225371539|gb|EEH00966.1| transcription-repair coupling factor [Borrelia sp. SV1]
          Length = 1125

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 144/465 (30%), Positives = 235/465 (50%), Gaps = 21/465 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + ++        P++ T  Q  
Sbjct: 532 WIKNKANAKKRIEEIADKLIELYSKRESIKGIKYP--EDNELQLLFESEFPYNETPDQIK 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKFTCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE               L  +  + 
Sbjct: 770 AYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEELYYLKT-----LIEKLTPY--AR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           +LG +Q G  + +     L  ++L  A +     ++ D +   + 
Sbjct: 940 LLGREQHGEIESIGLDYYL--TMLNKAIEKKMGKISSDEEEVDIE 982


>gi|209542295|ref|YP_002274524.1| transcription-repair coupling factor [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209529972|gb|ACI49909.1| transcription-repair coupling factor [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 1156

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 137/455 (30%), Positives = 220/455 (48%), Gaps = 17/455 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D    +  + R A  +     +A  L+R            +     +  +     PF  T
Sbjct: 547 DKLGGASWQNRKARMKQRIRDMAGELIRTAALRALREAPSMTPAEGMWDEFCARFPFVET 606

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + Q  AI D+L+DM     M R++ GDVG GKT VAL A   A  +G Q  ++ P  +LA
Sbjct: 607 EDQSRAIADVLEDMGSGRPMDRLVCGDVGFGKTEVALRAAFVAALSGAQVAVVVPTTLLA 666

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH+           I V  ++  +         + +A G  +I+IGTHAL    +Q+  
Sbjct: 667 RQHFRTFSARFSGLPITVAQLSRMVTPKEATAVRKGLADGTINIVIGTHALLAKGVQFAD 726

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + KL       HVL ++ATP+PRTL L   G  ++S I   P  
Sbjct: 727 LELLIIDEEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLALTGVREMSLIATPPTD 786

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  ++T I+P + +  + E ++     G + + + P+IE+        +  R   +    
Sbjct: 787 RLAVRTFIMPFDSV-VIREAIQRERFRGGQIFCVVPRIEDLD-----RMAARLQDIVPD- 839

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + +   HGR++  + E VM  F +G   +L++T ++E G+D+   + +II  A+ FGL 
Sbjct: 840 -ARLVQAHGRLTPTELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLG 898

Query: 575 QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
           QL+QLRGRVGRG++     L +     LS  +  RL V++  +    GF +A  DL  R 
Sbjct: 899 QLYQLRGRVGRGKQRGYAYLTWPQTHVLSAAAEKRLEVMQTLDTLGAGFTLASHDLDLRG 958

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            G +LG +QSG         EL+  +LE A  + +
Sbjct: 959 AGNLLGDEQSGHI--REVGIELYQQMLEDAVAELR 991


>gi|26247258|ref|NP_753298.1| transcription-repair coupling factor [Escherichia coli CFT073]
 gi|26107659|gb|AAN79858.1|AE016759_132 Transcription-repair coupling factor [Escherichia coli CFT073]
          Length = 951

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 200/386 (51%), Gaps = 10/386 (2%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 571 WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 628

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   AV+   Q  ++ P  +LAQQHY+
Sbjct: 629 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 688

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  + +E+I+       + + L  +A G+  I+IGTH L Q  +++  L L+I
Sbjct: 689 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 748

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 749 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 808

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  V E +   +  G + Y++   +E     N +   ER   L     + IA
Sbjct: 809 TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIA 860

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M + + E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQL
Sbjct: 861 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 920

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSY 605
           RGRVGR      C+       S +  
Sbjct: 921 RGRVGRSXPPGICMATDAASKSDDYR 946


>gi|238062748|ref|ZP_04607457.1| transcription-repair coupling factor [Micromonospora sp. ATCC 39149]
 gi|237884559|gb|EEP73387.1| transcription-repair coupling factor [Micromonospora sp. ATCC 39149]
          Length = 1229

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 135/451 (29%), Positives = 227/451 (50%), Gaps = 17/451 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +A Q+  L      K   G     +    +++    P+  T  Q 
Sbjct: 620  DWQKSKARARKAVKEIAAQLIQLYA--ARKASKGHAFAPDSPWQRELEDAFPWQETPDQL 677

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+++ +DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 678  AAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHH 737

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + +  ++         + LE IA G   I+IGTH L Q + ++  L LV
Sbjct: 738  NTFAERMSQFPVQIRQLSRFQTPKESERTLEMIAGGTVDIVIGTHRLLQTATRFKSLGLV 797

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L     +  VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 798  IVDEEQRFGVEHKEHLKTLRASVDVLSMSATPIPRTLEMAITGIREMSTIATPPEERHPV 857

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   +   L    + +++  ++E  +++  +        L     + +
Sbjct: 858  LTFVGAHDER-QVAASIHRELLRDGQVFYLHNRVETIEKTARK-----IRELVPE--ARV 909

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M +   E VM  F      +L+ TT++E GID+ +A+ +I+E A+  GLAQLHQ
Sbjct: 910  AVAHGQMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQ 969

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            +RGRVGRG E +    LY P  PL+++++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 970  IRGRVGRGRERAYAYFLYPPDKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGAGNL 1029

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            LG +QSG  +      +L+  ++  A +  K
Sbjct: 1030 LGGEQSGHIE--GVGFDLYVRMVGEAVQAFK 1058


>gi|90419666|ref|ZP_01227576.1| transcription-repair coupling factor [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336603|gb|EAS50344.1| transcription-repair coupling factor [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 1121

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 132/455 (29%), Positives = 228/455 (50%), Gaps = 17/455 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + R A  +    ++A  L+R     +      +     +  +     P+  T
Sbjct: 513 DKLGGGAWQARKAKLKKQLLEMADGLIRIAAARQMRGAPRLLPPEGLWDEFAARFPYEET 572

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + Q +AI  +  D++    M R++ GDVG GKT VAL +       G Q  ++ P  +LA
Sbjct: 573 EDQLNAIDAVADDLAAGRPMDRLICGDVGFGKTEVALRSAFIGAMNGLQVAVVVPTTLLA 632

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY+   +  +   + V   +  +      +  + IA G   I++GTHAL   ++ +  
Sbjct: 633 RQHYKTFSERFRGLPLNVAQASRLVASKELTQTKKGIADGTVDIVVGTHALLGKAVDFKN 692

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 693 LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTAPVD 752

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  ++T + P + +  V E L      G +++++CP++ +  +       E         
Sbjct: 753 RMAVRTFVSPFDPL-VVRETLLRERYRGGQSFYVCPRVSDLADVKAFLDAEV-------P 804

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
              +A+ HG+M+  + + +M++F  G   +L++TT++E G+D+  A+ +I+  A+ FGL+
Sbjct: 805 ELKVAVAHGQMAATELDDIMNAFYEGQYDVLLSTTIVESGLDIPSANTMIVHRADMFGLS 864

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKN--SYTRLSVLKNTE---DGFLIAEEDLKQRK 629
           QL+QLRGRVGR +  +  +L      +    +  RL VL++ +    GF +A  DL QR 
Sbjct: 865 QLYQLRGRVGRSKVRAYALLTIPANKTPTKGADRRLKVLQSLDTLGAGFQLASHDLDQRG 924

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            G ILG +QSG         EL+  +LE A  + K
Sbjct: 925 AGNILGDEQSGH--VKEVGFELYQQMLEEAVAEMK 957


>gi|209549326|ref|YP_002281243.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209535082|gb|ACI55017.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 1167

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 134/459 (29%), Positives = 231/459 (50%), Gaps = 21/459 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP--INVEGKIAQKILRNIPFSPT 274
            D       + R A  +     +A  L+R   ++       +     +  +     P+  T
Sbjct: 566  DKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLTRHAPMLTTPDGLYDEFAARFPYDET 625

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q++AI  +  D+     M R++ GDVG GKT VAL A   A   G Q  I+ P  +L+
Sbjct: 626  EDQDNAIDAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAIVVPTTLLS 685

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++   +  +   + ++  +  +         + +A G+  I++GTHAL    I++  
Sbjct: 686  RQHFKTFSERFRGLPVRIQQASRLVGAKELALTKKEVAEGKTDIVVGTHALLGAGIKFAN 745

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 746  LGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVD 805

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G +++++CP++ +          +    L    
Sbjct: 806  RMAVRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLADLA--------DVHAFLQSDV 856

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I+  A+ FGL
Sbjct: 857  PELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGL 916

Query: 574  AQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  
Sbjct: 917  AQLYQLRGRVGRS-KVRAFALFTLPVNKVLTATADRRLKVLQSLDTLGAGFQLASHDLDI 975

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            R  G +LG +QSG         EL+  +LE A  + K +
Sbjct: 976  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEAVAEVKGV 1012


>gi|325293164|ref|YP_004279028.1| transcription-repair coupling factor [Agrobacterium sp. H13-3]
 gi|325061017|gb|ADY64708.1| transcription-repair coupling factor [Agrobacterium sp. H13-3]
          Length = 1165

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 136/456 (29%), Positives = 228/456 (50%), Gaps = 19/456 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +     +A  L+R            +     +  +     P+  T
Sbjct: 563  DKLGGGAWQMRKAKLKKRLLDMADELIRIAAARLVRHAPALIAPDGLYDEFAARFPYDET 622

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q +AI  +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA
Sbjct: 623  EDQLNAIDAVRDDLGAGRPMDRLICGDVGFGKTEVALRAAFLAAMNGVQVAVVVPTTLLA 682

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH+    +  +   I V+  +  +         + +A G+  I++GTHAL    I +  
Sbjct: 683  RQHFRTFSERFRGLPIRVQQASRLVGSKELALTKKEVADGKTDIVVGTHALLGAGISFAN 742

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 743  LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVD 802

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G +++++CP++ +  + +     +         
Sbjct: 803  RMAVRTFISPFDPL-VIRETLMREHYRGGQSFYVCPRLADLADIHAFLQSDV-------P 854

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               +A+ HG+M+  + E +M++F +G   +L++TT++E G+DV  A+ +I+  A+ FGLA
Sbjct: 855  ELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTANTLIVHRADMFGLA 914

Query: 575  QLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            QL+QLRGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  R
Sbjct: 915  QLYQLRGRVGRS-KVRAFALFTLPVNKVLTTMAERRLKVLQSLDTLGAGFQLASHDLDIR 973

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
              G +LG +QSG         EL+  +LE A  + K
Sbjct: 974  GAGNLLGEEQSGHI--KEVGFELYQQMLEEAVAEVK 1007


>gi|325962661|ref|YP_004240567.1| transcription-repair coupling factor Mfd [Arthrobacter
            phenanthrenivorans Sphe3]
 gi|323468748|gb|ADX72433.1| transcription-repair coupling factor Mfd [Arthrobacter
            phenanthrenivorans Sphe3]
          Length = 1221

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 131/483 (27%), Positives = 228/483 (47%), Gaps = 17/483 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W S   +     + +AG++  L          G     +    +++    P+  T  Q 
Sbjct: 619  DWASTKSKARKAVKEIAGELIRLY--SARMASRGHAFGPDTPWQRELEEAFPYVETPDQL 676

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM ++  M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LAQQHY
Sbjct: 677  TTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHY 736

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +      + V+ ++        ++  E + +G   ++IGTH L     ++  L LV
Sbjct: 737  ETFTERFSGFPLRVKPLSRFQASKEAKETAEGVKNGTVDVVIGTHRLLSKDFEFKDLGLV 796

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +  T   VL M+ATPIPRTL ++  G  + S +   P  R P+
Sbjct: 797  IVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPV 856

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     +    ++  L    + +++  ++   +         +   L     + +
Sbjct: 857  LTYVGPYTD-KQTSAAIRRELMREGQVFFVHNRVSTIE-----RTAAKIRELVPE--ARV 908

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS+   E ++  F      +L+ TT+IE G+D+ +A+ +I++ A+ +GL+QLHQ
Sbjct: 909  EVAHGKMSESRLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDGADKYGLSQLHQ 968

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY    PL + +  RL  +    +   G  +A +DL+ R  G +
Sbjct: 969  LRGRVGRGRERAYAYFLYPSEKPLGEVALERLKAVATHNELGAGMQLAMKDLEIRGAGNL 1028

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +QSG         +L+  L+  A  D +    +      +       L + Y   E 
Sbjct: 1029 LGGEQSGHI--QGVGFDLYIRLVGEAVADYRGEAEEKAAEMKIELPVNAHLPHDYVPGER 1086

Query: 694  FQF 696
             + 
Sbjct: 1087 LRL 1089


>gi|103487138|ref|YP_616699.1| transcription-repair coupling factor [Sphingopyxis alaskensis RB2256]
 gi|98977215|gb|ABF53366.1| transcription-repair coupling factor [Sphingopyxis alaskensis RB2256]
          Length = 1194

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 143/473 (30%), Positives = 229/473 (48%), Gaps = 24/473 (5%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
            D+L +    S   A + +            +  R +    E +      LL     +   
Sbjct: 573  DVLSRYGGESDGVALDKLG---------GEAWQRRKARMKERIREIAGELLATAAQRALR 623

Query: 252  GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               I  +           P+  T  Q+ AI D+L DM+    M R++ GDVG GKT VAL
Sbjct: 624  PGEILTQDAAYPAFADRFPYQETDDQDRAIGDVLADMASGRPMDRLVCGDVGFGKTEVAL 683

Query: 312  IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                 A  AG Q  ++ P  +LA+QHY       +   I +  ++  +P A  +K  E +
Sbjct: 684  RPAFVAAMAGVQVAVVVPTTLLARQHYSNFVDRFKGFPIHIGRLSRLVPAAEAQKTREGL 743

Query: 372  AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            A GQ  I++GTHA+   S+++  L LVIVDE+ RFGV  + +L Q     HVL +TATPI
Sbjct: 744  ASGQIDIVVGTHAVIAKSVEFKNLGLVIVDEEQRFGVVHKERLKQLKADVHVLTLTATPI 803

Query: 432  PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            PRTL +   G  ++S I   P  R  ++T + P + +  + E L      G +++++ P+
Sbjct: 804  PRTLQMAMSGLRELSVIQTPPVDRLAVRTYVAPWDPV-VIREALLREHDRGGQSFFVTPR 862

Query: 492  IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            I++  +       E   +        +A  HG+M   + E  M +F +    +L++TT++
Sbjct: 863  IKDLPDIE-----EYLRTRVPEIKYVVA--HGQMGAQEVEERMSAFYDRKYDVLVSTTIV 915

Query: 552  EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLS 609
            E G+D+  A+ +I+  A+ FGLAQL+QLRGRVGR +  +   L       ++  +  RL 
Sbjct: 916  ESGLDIPSANTLIVHRADRFGLAQLYQLRGRVGRSKTRAYAYLTTPDGGAITDTAEKRLK 975

Query: 610  VLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +L + +    GF +A  DL  R  G ++G +QSG         EL+ S+LE A
Sbjct: 976  LLGDLDTLGAGFQLASHDLDIRGAGNLVGDEQSGHI--REVGFELYQSMLEEA 1026


>gi|240850603|ref|YP_002972003.1| transcription repair coupling factor [Bartonella grahamii as4aup]
 gi|240267726|gb|ACS51314.1| transcription repair coupling factor [Bartonella grahamii as4aup]
          Length = 1166

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 135/477 (28%), Positives = 234/477 (49%), Gaps = 24/477 (5%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    ++A  L+R   +        +        + +   P+  T
Sbjct: 561  DKLGGVAWQARKARLKKHLLEMAGQLIRIAAERMTRAAPALLPPIGPFDEFVACFPYEET 620

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q +AI  +L D++    M R++ GDVG GKT VA+ +   A   G Q  ++ P  +L+
Sbjct: 621  EDQMNAIDAVLDDLASGKPMDRLICGDVGFGKTEVAIRSAFVAALNGYQVAVVVPTTLLS 680

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QHY+      Q   + +   +  +      +  + ++ G   I+IGTHAL   ++ + +
Sbjct: 681  RQHYKTFISRFQGLPVKIGHASRLVKAKELAQVKKGVSDGTIDIVIGTHALLSGAVNFLR 740

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 741  LGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRTLGLALSGVRELSLITTPPID 800

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G +++++CP+I +               L  H 
Sbjct: 801  RMVVRTFISPFDAL-VIRETLLREYYRGGQSFYVCPRISDLAFVE--------EYLKTHV 851

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  + HG+M     + +M++F +G   +L++TT+IE G+D+  A+ +I+  AE FGL
Sbjct: 852  PELKFVVAHGQMPAGQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANTLIVHRAEMFGL 911

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            + L+QLRGRVGR ++ +  +  +     L+  +  RL VL++ +    GF +A  D+  R
Sbjct: 912  SALYQLRGRVGRSKQRAYALFTFPAGKVLTAAADRRLKVLQSLDTLGAGFQLASHDMDIR 971

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
              G  LG +QSG         EL+  +LE A  + K     D +L   +  S +I L
Sbjct: 972  GSGNFLGEEQSGHI--KEVGFELYQKMLEEAVTELK-----DGELNEDKQWSPQISL 1021


>gi|209885332|ref|YP_002289189.1| transcription-repair coupling factor [Oligotropha carboxidovorans
            OM5]
 gi|209873528|gb|ACI93324.1| transcription-repair coupling factor [Oligotropha carboxidovorans
            OM5]
          Length = 1171

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 137/443 (30%), Positives = 225/443 (50%), Gaps = 19/443 (4%)

Query: 224  ARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
             + R A  +    +IA  L++   + +        +   +  +     P   T+ Q +AI
Sbjct: 571  WQARKAKLKNRIREIAGDLIKIAAERQLHEAPKFPLHQGLYDEFCARFPHDETEDQLTAI 630

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
               L D++    M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA+QH +  
Sbjct: 631  NASLDDLNAGKPMDRLICGDVGFGKTEVALRAAFAVAMEGRQVAVVVPTTLLARQHAKNF 690

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
                +   + +   +  +     R+  + +A G   I++GTHAL   +I++  L L+IVD
Sbjct: 691  TDRFRGFPVKIAQASRLVSAKELRETKKGLAEGNIDIVVGTHALLGKTIKFKNLGLIIVD 750

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+  FGV  + +L Q     HVL ++ATPIPRTL L   G  D+S I   P  R  ++T 
Sbjct: 751  EEQHFGVSHKERLKQLRAEVHVLTLSATPIPRTLQLALTGVRDLSIIASPPVDRLAVRTF 810

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            + P + +  + E L      G +A+++CP+IE+  E+                   +A+ 
Sbjct: 811  VAPFDPL-MIREALLRERYRGGQAFYVCPRIEDLAEAKDFLDKNVPEM-------KVAVA 862

Query: 522  HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            HG+M+    E +M +F +G   +L++TT++E G+D+ +A+ +I+  A+ FGLAQL+QLRG
Sbjct: 863  HGQMAPGVIEDIMSAFYDGKFDILLSTTIVESGLDIPNANTLIVHRADMFGLAQLYQLRG 922

Query: 582  RVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILG 635
            RVGR  ++ +  L   P    ++  +  RL VL++ E+   GF +A  DL  R  G +LG
Sbjct: 923  RVGRS-KLRAYALFTLPAQRKITAQAERRLKVLQSLENLGAGFQLASHDLDIRGAGNLLG 981

Query: 636  IKQSGMPKFLIAQPELHDSLLEI 658
             +QSG         EL+  +LE 
Sbjct: 982  EEQSGHI--KEVGFELYQQMLEE 1002


>gi|297559048|ref|YP_003678022.1| transcription-repair coupling factor [Nocardiopsis dassonvillei
            subsp. dassonvillei DSM 43111]
 gi|296843496|gb|ADH65516.1| transcription-repair coupling factor [Nocardiopsis dassonvillei
            subsp. dassonvillei DSM 43111]
          Length = 1201

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 141/490 (28%), Positives = 234/490 (47%), Gaps = 30/490 (6%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW+            +AG +  L   +Q     G     +    +++    P+  T  Q 
Sbjct: 593  EWSKAKSRARKVVREIAGDLIRLYSARQA--SPGHAFGPDTPWQRELEDAFPYVETPDQL 650

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++ +DMS+   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +L QQH 
Sbjct: 651  AAIDEVKKDMSRSVPMDRLICGDVGYGKTEVAVRAAFKAVQDGKQVALLVPTTLLVQQHL 710

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +   +  + V+ ++            E +  G+  ++IGTH L     ++  L LV
Sbjct: 711  STFTERYASFPVTVKPMSRFQTDGEVEATREGLRSGEVDVVIGTHRLLSSETRFKDLGLV 770

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L +  T   VL M+ATPIPRTL +   G  +++ I   P  R P+
Sbjct: 771  IIDEEQRFGVEHKEALKRLRTQVDVLAMSATPIPRTLEMGLTGIREMTTILTPPEERHPV 830

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + +++  ++          V      L     + +
Sbjct: 831  LTFVGPYED-KQITAAIRRELMREGQVFFVHNRVASID-----KVAASIQRLVPE--ARV 882

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++   E VM  F      +L++TT++E G+DV +A+ +II+ A+ +GL+QLHQ
Sbjct: 883  AYAHGQMNEQQLEKVMVDFWEKNFDVLVSTTIVESGLDVPNANTLIIDRADTYGLSQLHQ 942

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  PL++ +Y RL+ +     T  G  +A +DL+ R  G I
Sbjct: 943  LRGRVGRGRERAYAYFLYPPERPLTETAYERLATVAQHTETGAGMYVAMKDLEIRGAGNI 1002

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-------Y 686
            LG +QSG         +L+  ++  A  +    L  DPD  +      ++ L       +
Sbjct: 1003 LGAEQSGTI--AGVGFDLYVRMVGEAVAE----LKGDPD--AAEEVETKVELPINAYIPH 1054

Query: 687  LYQYNEAFQF 696
             Y   E  + 
Sbjct: 1055 DYVPGERLRL 1064


>gi|312113596|ref|YP_004011192.1| transcription-repair coupling factor [Rhodomicrobium vannielii ATCC
            17100]
 gi|311218725|gb|ADP70093.1| transcription-repair coupling factor [Rhodomicrobium vannielii ATCC
            17100]
          Length = 1249

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 137/451 (30%), Positives = 219/451 (48%), Gaps = 17/451 (3%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
            +   R+      + A    L+ +    + +    + V      + +   P+  T  Q ++
Sbjct: 581  SWQGRKAKLKKRIRAMAEELIKVAALREMKPAPVLQVSDGAYNEFVTRFPYEETDDQLAS 640

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            I+ +  D+++   M R++ GDVG GKT VAL A   AV  G Q  ++ P  +LA+QHY+ 
Sbjct: 641  IEAVADDLAKGRPMDRLVCGDVGFGKTEVALRAAFIAVMEGKQVAVVVPTTLLARQHYQT 700

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
                 Q   + V   +  +         E +  GQ  I++GTHAL   SI +  L L+IV
Sbjct: 701  FVNRFQGFPVKVAQASRLVTPKEMTLTREGLKAGQVDIVVGTHALLAKSIGFKDLGLLIV 760

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+  FGV  + +L       HVL +TATPIPRTL L   G  ++S I   P  R  ++T
Sbjct: 761  DEEQHFGVAHKERLKNLREEVHVLTLTATPIPRTLQLALTGVREMSVIATPPVDRLAVRT 820

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519
             I P + +  + E L      G +++++ P+I +          E    L E        
Sbjct: 821  FITPFDPV-TLREALLRERYRGGQSFYVVPRISDLD--------EVATFLREQVPEIRFM 871

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              HG+M+    E +M +F +    +L++TT++E G+D+ +A+ +I+  A+ FGLAQL+QL
Sbjct: 872  QAHGQMAPTQLEDIMSAFYDKEFDVLLSTTIVESGLDIPNANTLIVHRADMFGLAQLYQL 931

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR +  +  +    P   ++  +  RL VL + +    GF +A  DL  R  G +L
Sbjct: 932  RGRVGRSKTRAYAMFTIPPNGKITPQAEKRLKVLHSLDSLGAGFTLASHDLDLRGAGNLL 991

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            G +QSG         EL+ S+LE A    K 
Sbjct: 992  GDEQSGHI--KEVGYELYQSMLEEAVAALKA 1020


>gi|148255539|ref|YP_001240124.1| transcription repair coupling factor [Bradyrhizobium sp. BTAi1]
 gi|146407712|gb|ABQ36218.1| transcription-repair coupling factor [Bradyrhizobium sp. BTAi1]
          Length = 1171

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 140/460 (30%), Positives = 233/460 (50%), Gaps = 17/460 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D    S  + R A  +    ++A  L++   +        + V+  +  +     P+  T
Sbjct: 564  DKLGGSGWQTRKAKLKNRIREMAGELIKIAAERMLHEAPKLPVQAGLYDEFCARFPYDET 623

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q +AI+  L D+     M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA
Sbjct: 624  EDQLTAIQATLADLEAGRPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLA 683

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH +   +  +   + V   +  +      +  + +A G   I++GTHAL   S+++  
Sbjct: 684  RQHAKTFTERFKGFPVNVAQASRLVSTKELNQVKKGLADGSVDIVVGTHALLGKSVKFRD 743

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L LVIVDE+  FGV  + +L Q     HVL ++ATPIPRTL L   G  ++S I   P  
Sbjct: 744  LGLVIVDEEQHFGVGHKERLKQLRAEVHVLTLSATPIPRTLQLALTGVRELSIIASPPVD 803

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +A+++ P+I++  E       E  +      
Sbjct: 804  RLAVRTFVAPHDPV-MIREALLRERYRGGQAFYVVPRIDDLAEVK-----EFLDKTVPEM 857

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               +A+ HG+M+    E ++ +F +G   +L++TT++E G+D+  A+ +I+  A+ FGLA
Sbjct: 858  --KVAVAHGQMAPTVIEDIIGAFYDGKFDILLSTTIVESGLDIPRANTLIVHRADMFGLA 915

Query: 575  QLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
            QL+QLRGRVGR +  +  +        +S  +  RL VL++ E    GF +A  DL  R 
Sbjct: 916  QLYQLRGRVGRSKLRAYALFTLPSTHKISAQAEKRLGVLQSLETLGAGFQLASHDLDIRG 975

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
             G +LG +QSG         EL+ S+LE A ++ K  +T+
Sbjct: 976  AGNLLGDEQSGHI--KEVGFELYQSMLEEAIENLKAGITE 1013


>gi|269976100|ref|ZP_06183099.1| transcription-repair coupling factor [Mobiluncus mulieris 28-1]
 gi|269935693|gb|EEZ92228.1| transcription-repair coupling factor [Mobiluncus mulieris 28-1]
          Length = 1172

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 129/438 (29%), Positives = 218/438 (49%), Gaps = 15/438 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++     + +A ++  L   +Q     G   + +    +++  +  +  T  Q 
Sbjct: 574  DWNKAKQKARKAVKDIARELVRLYAVRQS--SKGHAFSPDTPWQRELEDSFEYVETPDQL 631

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R+L GDVG GKT +A+ A   AV+ G Q  ++AP  +L  QH 
Sbjct: 632  TTIDEVKADMEKPVPMDRLLCGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLLVSQHL 691

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  +       I V  ++         +    +A G+  +++GTHAL    +++  L LV
Sbjct: 692  ETFQNRFAAFPITVAALSRFTTVKEATRIKADLADGKIEVVVGTHALLSGKVRFKDLGLV 751

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G   +S +T  P  R P+
Sbjct: 752  VIDEEQRFGVEHKEALKALRTNVDVLAMSATPIPRTLEMAITGIRGLSTLTTPPEERHPV 811

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   ++  +    + +++  +++     +   V +   SL     + I
Sbjct: 812  LTYVGAYSDR-QVAAAIRREMLRDGQVFYVHNRVQ-----DIARVAKHLQSLVPE--ARI 863

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E VM  F N    +L++TT++E G+DV +A+ III+ AE  GL+QLHQ
Sbjct: 864  RVGHGQMPETQLEQVMMDFWNQEFDVLVSTTIVENGLDVTNANTIIIDRAERMGLSQLHQ 923

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY     LS+ ++ RL  + +      G  IA++DL+ R  G +
Sbjct: 924  LRGRVGRGRERGYAYFLYPGGDTLSETAFERLKTIGSNTSLGAGMAIAQKDLEIRGAGNL 983

Query: 634  LGIKQSGMPKFLIAQPEL 651
            LG +QSG    +     +
Sbjct: 984  LGGEQSGHIASIGFDLYV 1001


>gi|227876324|ref|ZP_03994437.1| possible transcription-repair coupling factor [Mobiluncus mulieris
            ATCC 35243]
 gi|306817215|ref|ZP_07450962.1| transcription-repair coupling factor [Mobiluncus mulieris ATCC 35239]
 gi|227843097|gb|EEJ53293.1| possible transcription-repair coupling factor [Mobiluncus mulieris
            ATCC 35243]
 gi|304650017|gb|EFM47295.1| transcription-repair coupling factor [Mobiluncus mulieris ATCC 35239]
          Length = 1172

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 129/438 (29%), Positives = 218/438 (49%), Gaps = 15/438 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++     + +A ++  L   +Q     G   + +    +++  +  +  T  Q 
Sbjct: 574  DWNKAKQKARKAVKDIARELVRLYAVRQS--SKGHAFSPDTPWQRELEDSFEYVETPDQL 631

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R+L GDVG GKT +A+ A   AV+ G Q  ++AP  +L  QH 
Sbjct: 632  TTIDEVKADMEKPVPMDRLLCGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLLVSQHL 691

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  +       I V  ++         +    +A G+  +++GTHAL    +++  L LV
Sbjct: 692  ETFQNRFAAFPITVAALSRFTTVKEATRIKADLADGKIEVVVGTHALLSGKVRFKDLGLV 751

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G   +S +T  P  R P+
Sbjct: 752  VIDEEQRFGVEHKEALKALRTNVDVLAMSATPIPRTLEMAITGIRGLSTLTTPPEERHPV 811

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   ++  +    + +++  +++     +   V +   SL     + I
Sbjct: 812  LTYVGAYSDR-QVAAAIRREMLRDGQVFYVHNRVQ-----DIARVAKHLQSLVPE--ARI 863

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E VM  F N    +L++TT++E G+DV +A+ III+ AE  GL+QLHQ
Sbjct: 864  RVGHGQMPETQLEQVMMDFWNQEFDVLVSTTIVENGLDVTNANTIIIDRAERMGLSQLHQ 923

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY     LS+ ++ RL  + +      G  IA++DL+ R  G +
Sbjct: 924  LRGRVGRGRERGYAYFLYPGGDTLSETAFERLKTIGSNTSLGAGMAIAQKDLEIRGAGNL 983

Query: 634  LGIKQSGMPKFLIAQPEL 651
            LG +QSG    +     +
Sbjct: 984  LGGEQSGHIASIGFDLYV 1001


>gi|163760200|ref|ZP_02167283.1| transcription-repair coupling factor (TRCF) protein [Hoeflea
            phototrophica DFL-43]
 gi|162282599|gb|EDQ32887.1| transcription-repair coupling factor (TRCF) protein [Hoeflea
            phototrophica DFL-43]
          Length = 1168

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 137/451 (30%), Positives = 229/451 (50%), Gaps = 21/451 (4%)

Query: 223  PARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
              + R A  +     +A  L+R   +        +     +  +     P+  T+ Q +A
Sbjct: 573  AWQSRKAKLKKRLLDMAEGLIRIAAERHMRAAPVLGAPEGLYDEFSARFPYDETEDQMAA 632

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            I+ +  D+++   M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QH++ 
Sbjct: 633  IERVRGDLAEGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGVQVAVVVPTTLLARQHFKT 692

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
              +  +   + +   +  +           +A G+  I++GTHAL   SIQ+  L L+I+
Sbjct: 693  FTERLRGYPVRIAQASRLVGAKELALTKAELASGKTDIVVGTHALLGSSIQFANLGLLII 752

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T
Sbjct: 753  DEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTAPVDRMAVRT 812

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519
             I P + +  V E L      G +++++CP++ +          E    L         A
Sbjct: 813  FISPFDPV-TVRETLMREHYRGGQSFYVCPRVSDLD--------EVAAFLRSDVPELKFA 863

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M   + + +M++F +G   +L++TT++E G+DV  A+ +I+  A+ FGLAQL+QL
Sbjct: 864  IAHGQMGAGELDDIMNAFYDGQYDVLLSTTIVESGLDVPTANTLIVHRADMFGLAQLYQL 923

Query: 580  RGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            RGRVGR  ++ +  L   P    L+  +  RL VL++ +    GF +A  DL  R  G +
Sbjct: 924  RGRVGRS-KVRAFALFTLPVNKTLTATADKRLKVLQSLDTLGAGFQLASHDLDIRGAGNL 982

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            LG +QSG         EL+  +LE A  + +
Sbjct: 983  LGEEQSGHI--KEVGFELYQHMLEEAVAEVR 1011


>gi|307701502|ref|ZP_07638520.1| transcription-repair coupling factor [Mobiluncus mulieris FB024-16]
 gi|307613294|gb|EFN92545.1| transcription-repair coupling factor [Mobiluncus mulieris FB024-16]
          Length = 1172

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 129/438 (29%), Positives = 218/438 (49%), Gaps = 15/438 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    ++     + +A ++  L   +Q     G   + +    +++  +  +  T  Q 
Sbjct: 574  DWNKAKQKARKAVKDIARELVRLYAVRQS--SKGHAFSPDTPWQRELEDSFEYVETPDQL 631

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R+L GDVG GKT +A+ A   AV+ G Q  ++AP  +L  QH 
Sbjct: 632  TTIDEVKADMEKPVPMDRLLCGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLLVSQHL 691

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  +       I V  ++         +    +A G+  +++GTHAL    +++  L LV
Sbjct: 692  ETFQNRFAAFPITVAALSRFTTVKEATRIKADLADGKIEVVVGTHALLSGKVRFKDLGLV 751

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G   +S +T  P  R P+
Sbjct: 752  VIDEEQRFGVEHKEALKALRTNVDVLAMSATPIPRTLEMAITGIRGLSTLTTPPEERHPV 811

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   ++  +    + +++  +++     +   V +   SL     + I
Sbjct: 812  LTYVGAYSDR-QVAAAIRREMLRDGQVFYVHNRVQ-----DIARVAKHLQSLVPE--ARI 863

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E VM  F N    +L++TT++E G+DV +A+ III+ AE  GL+QLHQ
Sbjct: 864  RVGHGQMPETQLEQVMMDFWNQEFDVLVSTTIVENGLDVTNANTIIIDRAERMGLSQLHQ 923

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY     LS+ ++ RL  + +      G  IA++DL+ R  G +
Sbjct: 924  LRGRVGRGRERGYAYFLYPGGDTLSETAFERLKTIGSNTSLGAGMAIAQKDLEIRGAGNL 983

Query: 634  LGIKQSGMPKFLIAQPEL 651
            LG +QSG    +     +
Sbjct: 984  LGGEQSGHIASIGFDLYV 1001


>gi|260575079|ref|ZP_05843080.1| transcription-repair coupling factor [Rhodobacter sp. SW2]
 gi|259022701|gb|EEW25996.1| transcription-repair coupling factor [Rhodobacter sp. SW2]
          Length = 1147

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 138/450 (30%), Positives = 223/450 (49%), Gaps = 19/450 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    +IA  LMR   +        +     + +      P+  T
Sbjct: 540 DRLGGGAWQAKKAKLKDRIREIAERLMRIAAERHLRHAPILEAPHAMWEAFAARFPYQET 599

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q +AI D++ D+   + M R++ GDVG GKT VA+ A   A  AG Q  ++ P  +LA
Sbjct: 600 DDQLAAIADVVADLEAGSPMDRLIVGDVGFGKTEVAMRAAFVAALAGMQVAVVCPTTLLA 659

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY       +   I +  ++  +           +A G   I IGTHAL   +I++  
Sbjct: 660 RQHYRSFHDRFRGFPIEIRPLSRFVTAKDAAATRAGLADGTVDICIGTHALLAKAIRFKS 719

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+++DE+  FGV  + +L +     HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 720 LGLLVIDEEQHFGVTHKERLKEMRAEVHVLTLTATPIPRTLQLSLTGVRDLSIIATPPVD 779

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + I  V E L      G +++++ P+I +  E            L +H 
Sbjct: 780 RLAIRTYVSEFDGI-TVREALLRERFRGGQSFYVVPRISDLPEIE--------AFLRDHV 830

Query: 515 TSSIAII-HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +I HG+++  D +  M++F +G   +L+AT+++E G+D+  A+ +I+  A+ FGL
Sbjct: 831 PEVTHVIAHGQLAAHDLDERMNAFYDGKYDVLLATSIVESGLDIPAANTMIVHRADMFGL 890

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQR 628
            QL+Q+RGRVGR +  + C L   P  PL+  +  RL +L + +    GF +A  DL  R
Sbjct: 891 GQLYQIRGRVGRAKTRAYCYLTTKPRSPLTPQATKRLHLLGSLDSLGAGFNLASHDLDLR 950

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             G +LG +QSG         EL+ ++LE 
Sbjct: 951 GAGNLLGEEQSGHI--QEVGYELYQAMLEE 978


>gi|90424109|ref|YP_532479.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            BisB18]
 gi|90106123|gb|ABD88160.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            BisB18]
          Length = 1172

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 145/452 (32%), Positives = 230/452 (50%), Gaps = 21/452 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D    S  + R A  +    ++A  L++   +        + V+  +  +     P+  T
Sbjct: 565  DRLGGSGWQARKAKLKNRIREMAGELIKIAAERHLREAPKLVVQPHLYDEFCARFPYDET 624

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q  AI+  L D+     M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA
Sbjct: 625  EDQLGAIQASLHDLESGKPMDRLVCGDVGFGKTEVALRATFAVAMEGKQVAVVVPTTLLA 684

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH     +  +   + V   +  +P     K  + IA G   I++GTHAL   SI++  
Sbjct: 685  RQHARNFTERFRGFPVNVGQASRLVPPKELAKVKKGIAEGAIDIVVGTHALLGKSIKFRD 744

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L++VDE+  FGV  + +L Q     HVL ++ATPIPRTL L   G  D+S I   P  
Sbjct: 745  LGLIVVDEEQHFGVSHKERLKQLRAEVHVLTLSATPIPRTLQLALTGVRDLSIIASPPVD 804

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +A+++CP+IE+             + L +H 
Sbjct: 805  RLAVRTFVAPHDPL-MIREALLRERYRGGQAFYVCPRIEDLAGVK--------DFLDKHV 855

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M     E +M +F +G   +L++TT++E G+D+ +A+ +I+  A+ FGL
Sbjct: 856  PEMKVAVAHGQMPPTVIEDIMSAFYDGKYDILLSTTIVESGLDIPNANTLIVHRADMFGL 915

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  ++ +  L   P    ++  +  RL VL++ E    GF +A  DL  
Sbjct: 916  AQLYQLRGRVGRS-KLRAYALFTLPSQHQITAQAERRLKVLQSLETLGAGFQLASHDLDI 974

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G +LG +QSG         EL+ S+LE A
Sbjct: 975  RGAGNLLGEEQSGHI--KEVGFELYQSMLEEA 1004


>gi|306841773|ref|ZP_07474459.1| transcription-repair coupling factor [Brucella sp. BO2]
 gi|306288178|gb|EFM59565.1| transcription-repair coupling factor [Brucella sp. BO2]
          Length = 1170

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 229/452 (50%), Gaps = 21/452 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    +IA  L++   + +      +     +  +     P+  T
Sbjct: 568  DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQMRGAPVMTPPDGLYAEFAARFPYDET 627

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q +AI+ +  D++Q   M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L+
Sbjct: 628  DDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLS 687

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++          I V   +  +         + +  G   I++GTHAL   SI++  
Sbjct: 688  RQHFKTFSNRFHGLSINVAHASRLVGAKELAATKKGLEEGTVDIVVGTHALLGSSIKFKN 747

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 748  LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 807

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +++++ P+I +  +            L EH 
Sbjct: 808  RMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVVPRIADLTDIE--------EFLKEHV 858

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 859  PELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGL 918

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  +  +  L   P    L++ +  RL VL++ +    GF +A  D+  
Sbjct: 919  AQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDI 977

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G +LG +QSG         EL+  +LE A
Sbjct: 978  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 1007


>gi|330881517|gb|EGH15666.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 416

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 212/401 (52%), Gaps = 17/401 (4%)

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY   +    +  + 
Sbjct: 3   KPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYNSFRDRFADWPVT 62

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           VE+++          A+  +A G+  I+IGTH L QD ++   L LVI+DE+HRFGV+Q+
Sbjct: 63  VEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVIIDEEHRFGVRQK 122

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
            +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++T ++  N+   +
Sbjct: 123 EQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNK-PTI 181

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
            E L   L  G + Y++   ++  +             L     + I I HG+M + + E
Sbjct: 182 KEALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIGIGHGQMRERELE 234

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQLRGRVGR    + 
Sbjct: 235 QVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 294

Query: 592 CILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
             LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+LG  QSG      
Sbjct: 295 AYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQSGQI--QA 352

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
               L+  +LE A K  +    + P+L    G    I L +
Sbjct: 353 VGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 391


>gi|162147670|ref|YP_001602131.1| transcription-repair coupling factor [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786247|emb|CAP55829.1| putatve transcription-repair coupling factor [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 1131

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 137/455 (30%), Positives = 220/455 (48%), Gaps = 17/455 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D    +  + R A  +     +A  L+R            +     +  +     PF  T
Sbjct: 522 DKLGGASWQNRKARMKQRIRDMAGELIRTAALRALREAPSMTPAEGMWDEFCARFPFVET 581

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + Q  AI D+L+DM     M R++ GDVG GKT VAL A   A  +G Q  ++ P  +LA
Sbjct: 582 EDQSRAIADVLEDMGSGRPMDRLVCGDVGFGKTEVALRAAFVAALSGAQVAVVVPTTLLA 641

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH+           I V  ++  +         + +A G  +I+IGTHAL    +Q+  
Sbjct: 642 RQHFRTFSARFSGLPITVAQLSRMVTPKEATAVRKGLADGTINIVIGTHALLAKGVQFAD 701

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV  + KL       HVL ++ATP+PRTL L   G  ++S I   P  
Sbjct: 702 LELLIIDEEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLALTGVREMSLIATPPTD 761

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  ++T I+P + +  + E ++     G + + + P+IE+        +  R   +    
Sbjct: 762 RLAVRTFIMPFDSV-VIREAIQRERFRGGQIFCVVPRIEDLD-----RMAARLQDIVPD- 814

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + +   HGR++  + E VM  F +G   +L++T ++E G+D+   + +II  A+ FGL 
Sbjct: 815 -ARLVQAHGRLTPTELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLG 873

Query: 575 QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
           QL+QLRGRVGRG++     L +     LS  +  RL V++  +    GF +A  DL  R 
Sbjct: 874 QLYQLRGRVGRGKQRGYAYLTWPQTHVLSAAAEKRLEVMQTLDTLGAGFTLASHDLDLRG 933

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            G +LG +QSG         EL+  +LE A  + +
Sbjct: 934 AGNLLGDEQSGHI--REVGIELYQQMLEDAVAELR 966


>gi|49475638|ref|YP_033679.1| transcription repair coupling factor [Bartonella henselae str.
            Houston-1]
 gi|49238445|emb|CAF27673.1| Transcription repair coupling factor [Bartonella henselae str.
            Houston-1]
          Length = 1168

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 130/456 (28%), Positives = 226/456 (49%), Gaps = 17/456 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R    +    ++A  L+R   +        +        + +   P+  T
Sbjct: 563  DKLGGVAWQARKTRLKKHLLEMANQLIRIAAERATRSAPALLPPIGPFDEFVACFPYEET 622

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q  AI  +L D++    M R++ GDVG GKT VA+ +   A   G Q  ++ P  +L+
Sbjct: 623  EDQMDAIDAVLDDLASGKPMDRLICGDVGFGKTEVAIRSAFVAALNGYQVAVVVPTTLLS 682

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QHY+      Q   + +   +  +      +  + ++ G   I+IGTHAL  D++ + +
Sbjct: 683  RQHYKTFVSRFQGLPVKIGHASRLVKTKELAQVKKGLSDGTIDIVIGTHALLSDAVNFLR 742

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 743  LGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRTLGLALSGVRELSLITTPPID 802

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T I P + +  + E L      G +++++CP++ +          E   +     
Sbjct: 803  RMAVRTFIAPFDSL-VIRETLLREYYRGGQSFYVCPRVSDLGFVE-----EYLKAYVPEL 856

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               +A  HG+M     + +M++F +G   +L++TT+IE G+D+  A+ +I+  AE FGLA
Sbjct: 857  KFVVA--HGQMPAGQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANTLIVHRAEMFGLA 914

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
             L+QLRGRVGR ++ +  +  +     L+  +  RL VL++ +    GF +A  D+  R 
Sbjct: 915  ALYQLRGRVGRSKQRAYALFTFPSGKVLTPAADRRLKVLQSLDSLGAGFQLASHDMDIRG 974

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             G  LG +QSG         EL+  +LE A  + K 
Sbjct: 975  SGNFLGEEQSGHI--KEVGFELYQKMLEDAVVELKD 1008


>gi|171910874|ref|ZP_02926344.1| transcription-repair coupling factor [Verrucomicrobium spinosum DSM
           4136]
          Length = 1117

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 136/449 (30%), Positives = 230/449 (51%), Gaps = 19/449 (4%)

Query: 217 DFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
           D  W     +   + +E  AG +++   R+  K     P   + K   +  ++  +  T 
Sbjct: 505 DARWVKTRAQAEKSVEEFAAGMLSIAAQRQTLKGHAHPP---DTKWQVEFEQSFLYRETP 561

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q  +I +I +DM Q+  M R+L GDVG GKT VA+ A   AV  G Q  ++ P  +LAQ
Sbjct: 562 DQLKSIAEIKRDMEQEKPMDRLLCGDVGFGKTEVAIRAAFKAVMGGKQVAVLVPTTVLAQ 621

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QH    K+   +  + VE+++   P    ++ L+ +  G   I++GTH +    +Q+ +L
Sbjct: 622 QHLATFKERMSDYPVTVEMLSRLTPAKREKEILKGVKDGTVDIVVGTHRVISKDVQFKQL 681

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L ++DE+ RFGV+ + +  Q      VL ++ATPIPRTL L  +G  D+S +   P  R
Sbjct: 682 GLAVIDEEQRFGVKHKERFKQLFRLVDVLTLSATPIPRTLYLGLVGMRDMSTLDTPPPNR 741

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             ++T +   +    + + +   +  G + +++  ++      +   +  +  +L     
Sbjct: 742 HAVQTSVCGYDER-IIRDAINKEIERGGQVFFLHNRV-----MDMEKMKAKLEALSPK-- 793

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
           + + I HG+M +   E VM  F  G   +L+ TT+IE G+D+ +A+ III+ A+ FGLA 
Sbjct: 794 ARVVIGHGQMDETLLEDVMRRFIAGEADVLLCTTIIESGVDIPNANTIIIDRADRFGLAD 853

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSK--NSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
           L+QLRGRVGRG E +   L+    L    ++  R++ +K       GF IA  DL+ R  
Sbjct: 854 LYQLRGRVGRGGERAHAYLMLPRDLMTVGDARKRVTAIKQYTALGSGFKIAMRDLEIRGA 913

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           G +LG +QSG   F I   +L+  +L+ A
Sbjct: 914 GNLLGTEQSGHI-FAIG-FDLYCQMLKSA 940


>gi|298291681|ref|YP_003693620.1| transcription-repair coupling factor [Starkeya novella DSM 506]
 gi|296928192|gb|ADH89001.1| transcription-repair coupling factor [Starkeya novella DSM 506]
          Length = 1170

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 234/453 (51%), Gaps = 17/453 (3%)

Query: 224  ARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
             + R A  +    ++A  L++   Q +      +     +  +     P+  T+ Q++AI
Sbjct: 569  WQARKARMKSRIREMAAELIKVAAQRQLHEAPRLVPAAGLYDEFRARFPYEETEDQDAAI 628

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            + +  D+   + M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA+QH++  
Sbjct: 629  ESVFDDLGSGHPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHFKTF 688

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
             +  +   ++V   +  +      +  + +A G   I++GTHAL   +I +  L LVIVD
Sbjct: 689  SERFKGLPVVVRQASRLVSSKDMSETRKGLADGTVDIVVGTHALLGKTISFKDLGLVIVD 748

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+  FGV  + KL Q     HVL +TATPIPRTL L   G  ++S I   P  R  +++ 
Sbjct: 749  EEQHFGVAHKEKLKQLRADVHVLTLTATPIPRTLQLAMTGVRELSIIASPPVDRLAVRSF 808

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            + P + +  V E L      G +++++CP+IE+  E   +  ++R     +     +A+ 
Sbjct: 809  VTPFDPL-IVREALLRERYRGGQSFYVCPRIEDLAE--VKDFLDR-----QVPEVKVAVA 860

Query: 522  HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
            HG+M+    E +M +F +G   +L++TT++E G+D+  A+ +II  A+ FGLAQL+QLRG
Sbjct: 861  HGQMAATQLEEIMSAFYDGQFDVLLSTTIVESGLDIPTANTLIIHRADMFGLAQLYQLRG 920

Query: 582  RVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGI 636
            RVGR +  +  I        ++  +  RL VL++ +    GF +A  DL  R  G +LG 
Sbjct: 921  RVGRSKTRAYAIFTLPAEKQVTAQAERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGD 980

Query: 637  KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            +QSG         EL+  +LE A  + K  +T 
Sbjct: 981  EQSGHI--KEVGYELYQEMLEEAIANLKAGITA 1011


>gi|146340719|ref|YP_001205767.1| transcription repair coupling factor [Bradyrhizobium sp. ORS278]
 gi|146193525|emb|CAL77541.1| transcription repair coupling factor [Bradyrhizobium sp. ORS278]
          Length = 1172

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 139/460 (30%), Positives = 233/460 (50%), Gaps = 17/460 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D    S  + R A  +    ++A  L++   +        + V+  +  +     P+  T
Sbjct: 565  DKLGGSGWQTRKAKLKNRIREMAGELIKIAAERMLHEAPKMPVQAGLYDEFCARFPYDET 624

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q +AI+  L D+     M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA
Sbjct: 625  EDQLAAIQATLGDLEAGRPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLA 684

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH +   +  +   + V   +  +      +  + +A G   I++GTHAL   ++++  
Sbjct: 685  RQHAKTFTERFRGFPVNVAQASRLVSTKELNQVKKGLADGSVDIVVGTHALLGKTVKFRD 744

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L LVIVDE+  FGV  + +L Q     HVL ++ATPIPRTL L   G  ++S I   P  
Sbjct: 745  LGLVIVDEEQHFGVSHKERLKQLRAEVHVLTLSATPIPRTLQLALTGVRELSIIASPPVD 804

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +A+++ P+I++  E       E  +      
Sbjct: 805  RLAVRTFVAPHDPV-MIREALLRERYRGGQAFYVVPRIDDLAEVK-----EFLDKTVPEM 858

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               +A+ HG+M+    E ++ +F +G   +L++TT++E G+D+  A+ +I+  A+ FGLA
Sbjct: 859  --KVAVAHGQMAPTVIEDIISAFYDGKFDILLSTTIVESGLDIPRANTLIVHRADMFGLA 916

Query: 575  QLHQLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
            QL+QLRGRVGR +  +  +        +S  +  RL VL++ E    GF +A  DL  R 
Sbjct: 917  QLYQLRGRVGRSKLRAYALFTLPSTHKVSAQAEKRLGVLQSLETLGAGFQLASHDLDIRG 976

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
             G +LG +QSG         EL+ S+LE A ++ K  +T+
Sbjct: 977  AGNLLGDEQSGHI--KEVGFELYQSMLEEAIENLKAGITE 1014


>gi|307564503|ref|ZP_07627044.1| transcription-repair coupling factor [Prevotella amnii CRIS 21A-A]
 gi|307346863|gb|EFN92159.1| transcription-repair coupling factor [Prevotella amnii CRIS 21A-A]
          Length = 1178

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 135/451 (29%), Positives = 230/451 (50%), Gaps = 19/451 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +     + +A  +  L  ++  + E G   + +  +  ++  +  +  T  Q  
Sbjct: 559 WERLKEKAKKRIKDIARDLIKLYAKR--RHEKGFAFSPDSFMQHELEASFLYEDTPDQLK 616

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A +D+ QDM     M R++ GDVG GKT VA+ A   A     Q  ++ P  +LA QHY+
Sbjct: 617 ATQDLKQDMESSQPMDRLICGDVGFGKTEVAIRAAFKAAADNKQVAVLVPTTVLALQHYK 676

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +   ++  + ++ ++        ++ L  +A G+  I+IGTH L   +++++ L L+I
Sbjct: 677 SFQNRLKDMPVTIDYLSRARTTKQTKQILSNLATGKIDILIGTHKLLGKTVKWHDLGLLI 736

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q  T    L MTATPIPRTL  + +G  D+S +   P  R PI+
Sbjct: 737 IDEEQKFGVSTKEKLRQIKTNVDTLTMTATPIPRTLQFSLMGARDMSIMKTPPPNRYPIQ 796

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
           T II  +  + + E +   +S   + +++  +I + +        +    +        I
Sbjct: 797 TEIIEFD-PETIAEAINFEMSRNGQVFFVNDRIGKLQ--------DLAAMIRRKVPDCRI 847

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           AI HG+M   + E ++  F N    LL++TT++E GID+ +A+ III +A HFGL+ LHQ
Sbjct: 848 AIGHGQMKPEELEEIIIGFMNYDYDLLLSTTIVENGIDISNANTIIINDAHHFGLSDLHQ 907

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           +RGRVGR  + + C L+  P   L+  +  R+  L+   D   GF +A +DL  R  G +
Sbjct: 908 MRGRVGRSNKKAFCYLITPPMALLNTEARRRIEALETFSDLGSGFNLAMQDLDIRGAGNL 967

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           LG +QSG  + L    E +  +L  A  + +
Sbjct: 968 LGAEQSGFMEDL--GYETYQKILSQAVTELR 996


>gi|160902853|ref|YP_001568434.1| DEAD/DEAH box helicase domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160360497|gb|ABX32111.1| DEAD/DEAH box helicase domain protein [Petrotoga mobilis SJ95]
          Length = 974

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 133/433 (30%), Positives = 227/433 (52%), Gaps = 13/433 (3%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                 W +  ++     +    ++  +   ++ ++   I +  + ++ +K     P+  
Sbjct: 387 SLNSKSWKNTKQKVKEEIKQKIEELQKIYALRENQRG--IQLFGDPELEEKFKETFPYVE 444

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  QE +IK++++D+  +  M R+L GD G GKT VA+ A    V +  Q +++AP  IL
Sbjct: 445 TPDQEKSIKEVMRDLESERPMDRLLSGDSGFGKTEVAMRAAFRTVVSNYQVLLLAPTTIL 504

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QHYE  K+   +  I + ++T +  Q  ++   E I  GQ  I+IGTHAL  D +Q  
Sbjct: 505 AKQHYENFKQRMDSFGIKIALVTRHKTQKEKKDLFESIGKGQVDIVIGTHALLSDLLQVK 564

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L LVIVDE+ RFGV Q+ K  + +   + L+M+ATPIPRTL ++  G  DIS I+  P 
Sbjct: 565 NLGLVIVDEEQRFGVLQKEKFKKLSDGVNFLMMSATPIPRTLYMSISGLRDISTISTPPV 624

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GR PI+T I   +    V   +    S G +  +I  +++E  E + +       +L   
Sbjct: 625 GRLPIQTFIGKYSD-KLVRTAILREKSRGGQVIYIHNRVQELNELHKK-----LRTLIPE 678

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               IA++HG     +    ++   +G   LL++TT+IE GID+ + + +I+++ E +G+
Sbjct: 679 I--KIAMVHGGTPKKEFIKSINDLYDGNIDLLLSTTIIENGIDIPNVNTLILDDPERYGI 736

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
           +QL+Q++GRVGR    +    L+   ++  +  RL  +K       G  +A  DL+ R  
Sbjct: 737 SQLYQIKGRVGRSNRRAFVYFLFKKEVTPQTKKRLEAIKQYNEPGSGLKLALRDLEIRGY 796

Query: 631 GEILGIKQSGMPK 643
           G+ILGI+Q G   
Sbjct: 797 GDILGIEQKGHIN 809


>gi|288574800|ref|ZP_06393157.1| transcription-repair coupling factor [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570541|gb|EFC92098.1| transcription-repair coupling factor [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 1014

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 135/444 (30%), Positives = 224/444 (50%), Gaps = 17/444 (3%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P +     W++  R+     E  A ++  L  ++  K   G   + +G+  ++  R+ P 
Sbjct: 429 PDRLGSSRWSTSLRKAERQIEEEAKELLELYAKR--KIAKGHAFSPDGEAMEEFERSFPH 486

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q  AI D+ +DM     M R++ GDVG GKT VAL A+  A   G Q +++ P  
Sbjct: 487 EETIDQLKAISDVKKDMESPRPMDRLVVGDVGYGKTEVALRAVFKAAMDGFQVLVLVPTT 546

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LAQQHY   +       + VE+++  + Q  + + L  +A G   ++IGTH L Q+ ++
Sbjct: 547 VLAQQHYMTFRSRMGPFPLKVELLSRFVSQRRQNEILTGLADGSVDVVIGTHRLLQNDLK 606

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
             +L L+IVDE+HRFGV  + +  +  +   VL ++ATPIPRT  +   G  D+S I   
Sbjct: 607 IRRLGLIIVDEEHRFGVAHKERFRKLRSGVDVLTLSATPIPRTFSMAMKGMRDVSIIETP 666

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P  R  I TV    +    V + L   ++ G + Y +  ++   +        ER   + 
Sbjct: 667 PGNRPAIITVTGAWDD-GLVRKALAREMARGGQVYMLHNRVGTIE--------ERAGWVK 717

Query: 512 EHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
             F    +A  HGRM + + E  M +F +G   +L+ TT++E G+DV  A+ ++++++  
Sbjct: 718 SRFPDVRVAFAHGRMRENELEETMMAFYDGEIDILVCTTIVESGLDVGRANTLVVDDSRL 777

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYH-----PPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            GLAQ+HQLRGRVGR ++ +    LY      P  +      +  L     G+ +A+EDL
Sbjct: 778 LGLAQMHQLRGRVGRRDDTAYAFFLYPSDCVLPHSTAERLDAIGRLSFQGAGYELAKEDL 837

Query: 626 KQRKEGEILGIKQSGMPKFLIAQP 649
             R  G++LG+ Q G  + +  Q 
Sbjct: 838 HIRGGGDLLGMSQHGHRERVGLQL 861


>gi|312880022|ref|ZP_07739822.1| transcription-repair coupling factor [Aminomonas paucivorans DSM
           12260]
 gi|310783313|gb|EFQ23711.1| transcription-repair coupling factor [Aminomonas paucivorans DSM
           12260]
          Length = 1041

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 147/475 (30%), Positives = 237/475 (49%), Gaps = 21/475 (4%)

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKE 250
           ++   PS  E+    ++    +D    S      +  L   +  A + A  L+  Q ++E
Sbjct: 431 KRLLLPSYQESKLTRYDGVGGEDVSLDSLRRGHWKRVLEEAKKRAAEAAQKLLEAQARRE 490

Query: 251 IG--IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           I    P     +    +L   P+  T+ Q  A ++I +DM +   M R+L GDVG GKT 
Sbjct: 491 ISEGFPFPPLREETALLLDTFPYRETEDQIRAWEEIREDMERPVPMDRLLVGDVGFGKTE 550

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           +AL A   A   G Q  ++ P  +LA QH +  +       + VE+++    +A +++ L
Sbjct: 551 LALRAAFKAAMGGKQVALITPTTLLAHQHGQTFRDRLSPFPLRVEVLSRFRTEAEQKEVL 610

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             +A G+  ++IGTH L    +++ ++ L+IVDE+HRFGV  + K      A  VLL++A
Sbjct: 611 GALAEGKVDVVIGTHRLLSGDVRFARMGLLIVDEEHRFGVLHKEKWRAAFPAADVLLLSA 670

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL L   G  D+S +   P  R+P+ TV+ P +    V   +    + G + +W+
Sbjct: 671 TPIPRTLHLALGGYRDLSVLATPPHHRRPVLTVVSPWSE-SLVRGAVLREKARGGQVFWV 729

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +I+   +        R   L  +    +A  HGRM + + E VM  F  G   LL+ T
Sbjct: 730 HNRIQSIHKQAL-----RLRRLFPNLRLEVA--HGRMKERELEEVMGRFVEGKTDLLLCT 782

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYT 606
           T+IE G+D+  A+ +++++A   GLAQLHQLRGRVGR EE +    LY     LS+ +  
Sbjct: 783 TIIESGLDLPRANTLVVDDAHDLGLAQLHQLRGRVGRREEQAFAFFLYPERAELSREARD 842

Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           RL  +   ++   G  +A  DL  R  G+++G+ Q G    +    E +  LLE 
Sbjct: 843 RLEAIAELDELGGGLQLARRDLAIRGGGDLMGLLQHGHAARI--GFERYCQLLEE 895


>gi|119386518|ref|YP_917573.1| transcription-repair coupling factor [Paracoccus denitrificans
           PD1222]
 gi|119377113|gb|ABL71877.1| transcription-repair coupling factor [Paracoccus denitrificans
           PD1222]
          Length = 1154

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 138/450 (30%), Positives = 227/450 (50%), Gaps = 19/450 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + R A  +     IA  LMR   +        +  E    +      P++ T
Sbjct: 546 DKLGGGAWQARKARLKERIKLIADKLMRVAAERMLRPAPVLEPEHHEIESFAARFPYAET 605

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + Q SAI D+ +D++    M R++ GDVG GKT VA+ A   A   G Q  ++AP  +LA
Sbjct: 606 EDQASAIADVAEDLAAGRPMDRLVVGDVGFGKTEVAMRAAFIAASQGRQVAVVAPTTLLA 665

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH+    +  + T I V  ++  +      +  + +A G   I++GTHA+    +++  
Sbjct: 666 RQHFRTFAERFRGTAINVRPLSRFVSAKDATETRKGLAEGTVDIVVGTHAVLSKQVRFKN 725

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+IVDE+  FGV  + +L +  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 726 LGLLIVDEEQHFGVAHKERLKELRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVD 785

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  + E L      G +++++ P++ +  E            L EH 
Sbjct: 786 RLSIRTYVSEFDGV-TIREALLREKYRGGQSFFVVPRLADLPEVE--------EWLREHV 836

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S  + HG+++  D +  M++F +    +L+ATT++E G+D+  A+ +++  A+ FGL
Sbjct: 837 PEVSTIVAHGQLAAGDLDRRMNAFYDRGADVLLATTIVESGLDIPTANTMVVWRADMFGL 896

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLS---VLKNTEDGFLIAEEDLKQR 628
           AQL+Q+RGRVGR +  + C L   P  PL+  +  RL     + +   GF +A +DL  R
Sbjct: 897 AQLYQIRGRVGRSKTRAYCYLTTKPRVPLTPQAMRRLKFLGAIDSLGAGFNLASQDLDLR 956

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             G +LG +QSG         EL+  +LE 
Sbjct: 957 GAGNLLGEEQSGHI--KEVGFELYQQMLEE 984


>gi|283856518|ref|YP_163381.2| transcription-repair coupling factor [Zymomonas mobilis subsp.
            mobilis ZM4]
 gi|283775523|gb|AAV90270.2| transcription-repair coupling factor [Zymomonas mobilis subsp.
            mobilis ZM4]
          Length = 1167

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 132/450 (29%), Positives = 230/450 (51%), Gaps = 17/450 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W +   +       +AGQ+     ++  ++        +       +   P+  T+ QE 
Sbjct: 568  WQARKSKMKERIRAIAGQLMATAAQRALRQAPVA--LADPASYPVFVDRFPYQETEDQEH 625

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI D+++D+++   M R++ GDVG GKT VAL A   A  +G Q  ++ P  +LA+QHY 
Sbjct: 626  AISDVIEDLAKGKPMDRLICGDVGFGKTEVALRAAFVAAMSGLQVALVCPTTLLARQHYS 685

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +  +   + +  ++  +P    +   E +A G   I+IGTHA+   +I + +L LVI
Sbjct: 686  NFLERFEGFPLQIGRLSRLVPAKEAKACREALADGTIDIVIGTHAILSKTIDFNRLGLVI 745

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+  FGV  + +L       H L +TATPIPRTL +   G  ++S I   P  R  ++
Sbjct: 746  VDEEQHFGVVHKERLKALKNDVHQLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLAVR 805

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            + ++P + +  + E L      G +++ + P+I +  +   + + E+   +         
Sbjct: 806  SYVMPWDPVA-IREALLREHYRGGQSFIVVPRISDLADLE-KFLSEQVPEI------RFV 857

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M+  + E+ M +F +    +L++TT++E G+D+  A+ +I+  A+ FGL+QL+Q+
Sbjct: 858  IAHGQMAATEVENRMSAFYDKKFDVLLSTTIVESGLDIPSANTMIVYRADRFGLSQLYQI 917

Query: 580  RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR +  +   L    +  +S+ +  RL +L   +    GF +A  DL  R  G +L
Sbjct: 918  RGRVGRSKTRAYAYLTTPVNHSISETAEKRLHILSTLDSLGAGFQLASHDLDIRGAGNLL 977

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            G +QSG         EL+ S+LE A   AK
Sbjct: 978  GDEQSGHI--KEVGFELYQSMLEDAILVAK 1005


>gi|301059200|ref|ZP_07200138.1| transcription-repair coupling factor [delta proteobacterium NaphS2]
 gi|300446690|gb|EFK10517.1| transcription-repair coupling factor [delta proteobacterium NaphS2]
          Length = 1180

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 136/450 (30%), Positives = 222/450 (49%), Gaps = 17/450 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W    ++     + +A Q+  L   + ++   G   +      ++      +  T  Q  
Sbjct: 588  WGLTKQKAKNSVKKIARQLVELYALRNYR--KGFRFSPPDHYFREFEAAFEYEETDDQSK 645

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI D+L+D+S    M R++ GDVG GKT +A+ A   AV  G Q   + P  +LA+QHYE
Sbjct: 646  AIDDVLEDLSSDKSMDRLICGDVGFGKTEIAIRAAFKAVTDGKQVAFLVPTTVLAEQHYE 705

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              +K      + V I++    +A + K +  +  G+ +I+IGTH + Q  + +  L LVI
Sbjct: 706  TFRKRMTPHSVTVGILSRFKTKAEQGKIIAEVRSGKINILIGTHRILQKDVSFADLGLVI 765

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV+Q+  L +      VL +TATP+PRTL ++ +G  D+S I   P  R  I+
Sbjct: 766  IDEEQRFGVKQKEALKKYRALVDVLAITATPVPRTLQMSMMGVRDLSVIETPPRDRLAIE 825

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T + P +    +   ++  L  G + +++  +++           +    L     +   
Sbjct: 826  TYLSPYDE-ATIKRAIQNELERGGQTFFVHNRVKSIV-----HTADALRKLVPE--ARFE 877

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+M   + E+ M  F      +L+ TT+IE G+D+  A+ III  A+  GLAQ++QL
Sbjct: 878  VAHGQMKPKELENTMMRFLKREIDVLVCTTIIESGLDIPSANTIIINEADRLGLAQIYQL 937

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR  E +   LL      L++++  RL  L +  +   G  +A  DLK R  G IL
Sbjct: 938  RGRVGRASEKAYAYLLVTRDAMLTRDAEKRLKALMDFSNLGAGLHLAMHDLKIRGGGNIL 997

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            G  QSG         EL+  L+E    + K
Sbjct: 998  GFSQSGHIS--AVGYELYLKLIERTVTELK 1025


>gi|255994799|ref|ZP_05427934.1| transcription-repair coupling factor [Eubacterium saphenum ATCC
           49989]
 gi|255993512|gb|EEU03601.1| transcription-repair coupling factor [Eubacterium saphenum ATCC
           49989]
          Length = 1092

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 229/453 (50%), Gaps = 19/453 (4%)

Query: 219 EWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           EW+   ++  L+  EL    +     RK  K         + + ++K   +  + PT  Q
Sbjct: 490 EWSVTKKKAWLSVLELAKKILEDEAKRKAKKG---YAFLPDDEESKKFDADFSYIPTDDQ 546

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI ++  DM   + M R+L GDVG GKT VA  AM   V AG Q   +AP  IL  QH
Sbjct: 547 LRAIDEVKADMESHSPMDRLLCGDVGYGKTEVAARAMYKCVAAGKQVAFLAPTTILVNQH 606

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           Y+ + K  + T  I+  ++       ++K +E    G+  I+IGTH +    I +  L L
Sbjct: 607 YKTLVKRFEKTAAIIGELSRFRTDVQQKKIIEDAKAGKVDILIGTHRMLSQDIGFQDLGL 666

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV Q+ K+ +      VL ++ATPIPRT+ +   G  D+S IT  P  R P
Sbjct: 667 LIIDEEQRFGVVQKEKIRRLRQNVDVLTLSATPIPRTMHMAISGARDLSLITHPPLERMP 726

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + T +  I   + + E ++  ++   + Y +C +I   ++       E+   L +     
Sbjct: 727 VNTFVY-IKSDEIMREAIEREVARKGQVYVVCRRISHMQDVK-----EKIERLVKGI--R 778

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +  ++G+M++   E  + SF  G   +L+ T +IE GID+ +A+ III +A+  G+A+L+
Sbjct: 779 VDTVNGQMNEKYIEDTLSSFIAGEIDVLVCTKIIETGIDIKNANTIIILDADMMGIAELY 838

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGE 632
           QLRGRVGRG   S   LL++    LS    +RL+ +K          +A +D++ R  G+
Sbjct: 839 QLRGRVGRGNRSSFAYLLHNDYKKLSDEQKSRLTAIKEFAKFGSSLTLAMKDMQIRGAGD 898

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           I+G +Q G    +    E++  L+E A K    
Sbjct: 899 IIGKQQHGHM--ISIGYEMYIKLIEDAVKALNE 929


>gi|306845910|ref|ZP_07478478.1| transcription-repair coupling factor [Brucella sp. BO1]
 gi|306273802|gb|EFM55640.1| transcription-repair coupling factor [Brucella sp. BO1]
          Length = 1170

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 228/452 (50%), Gaps = 21/452 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    +IA  L++   + +      +     +  +     P+  T
Sbjct: 568  DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQMRGAPVMTPPDGLYAEFAARFPYDET 627

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q +AI+ +  D++Q   M R++ GDVG GKT VAL A   A  +G Q   + P  +L+
Sbjct: 628  DDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAAVVPTTLLS 687

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++          I V   +  +         + +  G   I++GTHAL   SI++  
Sbjct: 688  RQHFKTFSNRFHGLPINVAHASRLVGAKELAATKKGLEEGTVDIVVGTHALLGSSIKFKN 747

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 748  LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 807

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +++++ P+I +  +            L EH 
Sbjct: 808  RMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVVPRIADLTDIE--------EFLKEHV 858

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 859  PELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGL 918

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  +  +  L   P    L++ +  RL VL++ +    GF +A  D+  
Sbjct: 919  AQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDI 977

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G +LG +QSG         EL+  +LE A
Sbjct: 978  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 1007


>gi|269792682|ref|YP_003317586.1| DEAD/DEAH box helicase domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100317|gb|ACZ19304.1| DEAD/DEAH box helicase domain protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 994

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 221/450 (49%), Gaps = 16/450 (3%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
              K   W+   +E        A ++     R+   +   I  +   +  +++    P+ 
Sbjct: 416 DSLKRGRWSRSYQEAKEKAREAAERLLSAQARRHSARG--IAFDPLEREMEELRSTFPYR 473

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q    ++I  DM +   M R+L GDVG GKT +AL A   A  +G Q V++ P  +
Sbjct: 474 ETVDQVRCWEEIRADMERPVPMDRLLVGDVGFGKTELALRAAFKAAMSGYQVVVVTPTTL 533

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA QH            + VE +   +P++ + + L   A G+  I+IGTH +  D ++ 
Sbjct: 534 LASQHLSTFASRLSPFPLRVEALYRFVPRSRQEEILNDFAEGRVDILIGTHRILGDDVRA 593

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             L L+++DE+HRFGV Q+ +  ++     VL+++ATPIPRTL L   G  DIS +T  P
Sbjct: 594 RNLGLIVLDEEHRFGVMQKERWRERFPGADVLMLSATPIPRTLQLALGGYKDISVMTTPP 653

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             R+P+ TV+ P  + + V   +   LS G + +W+  +I+            R  +L  
Sbjct: 654 VDRRPVVTVVSPW-QDELVKGAVLRELSRGGQVFWVHNRIQS-----MHRAFLRAKALLP 707

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                + + HGRM D + ES+M  F  G   +L+ TT+IE G+D+   + II+E+A   G
Sbjct: 708 GV--RVEMAHGRMRDSELESLMARFVEGRLDVLLCTTIIESGLDLPRVNTIIVEDAHRMG 765

Query: 573 LAQLHQLRGRVGRGEEISSCILLYH----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           LAQL+QLRGRVGR  + +  + LY        +      +  L+    GF +A  DL  R
Sbjct: 766 LAQLYQLRGRVGRRSDQAFALFLYPRGAEAGRALERLEAIGSLEELGSGFHLAMMDLSIR 825

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             GE+LG  Q G    L   PEL+  +LE 
Sbjct: 826 GGGELLGTAQHGHVSSL--SPELYFQMLER 853


>gi|307295470|ref|ZP_07575306.1| transcription-repair coupling factor [Sphingobium chlorophenolicum
           L-1]
 gi|306878509|gb|EFN09729.1| transcription-repair coupling factor [Sphingobium chlorophenolicum
           L-1]
          Length = 1157

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 145/514 (28%), Positives = 242/514 (47%), Gaps = 32/514 (6%)

Query: 164 TGLSVDLFKKIIVE--ALSRLPVLPEWIE---KDLLQKKSFPSIAEAFNIIHNPRKAKDF 218
            GL+     K   +  AL        ++     ++L +    S   +           D 
Sbjct: 506 EGLTQIPVAKAAHDCVALEYAGGDKLYVPVENLEVLSRYGSDSEGVSL----------DK 555

Query: 219 EWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
                 + R A  +    +IA  L++   +           +       +   P+  T+ 
Sbjct: 556 LGGEAWQRRKARMKERIREIAGELLKTAAERALRAATVAEPDSAGYPAFVDRFPYQETED 615

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q+ AI D+++D+     M R++ GDVG GKT VAL A   A  AG Q V++ P  +LA+Q
Sbjct: 616 QDRAIMDVVEDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMAGMQVVVICPTTLLARQ 675

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+   ++  +   + +  ++   P    +     +A G   I++GTHAL    +++ +L 
Sbjct: 676 HHMNFEERFRGFPVNIGRLSRLAPDKEAKAVKAGLADGTVDIVVGTHALLAKGLEFKRLG 735

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVIVDE+ RFGV  + +L    T  HVL +TATPIPRTL +   G  ++S I   P  R 
Sbjct: 736 LVIVDEEQRFGVTHKERLKSLKTDVHVLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRL 795

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            ++T I+P + +  + E L      G +++++ P+I +  E       E           
Sbjct: 796 AVRTYIMPWDGV-VIREALLREHYRGGQSFFVVPRIADLTEVEEFLRTEV-------PEV 847

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
              + HG+M+  + E  M +F +    +L++TT++E G+D+  A+ +II  A+ FGLAQL
Sbjct: 848 KPIVAHGQMAASEVEERMSAFYDKRYDVLLSTTIVESGLDIPSANTLIIHRADRFGLAQL 907

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           +QLRGRVGR +  +           +++ +  RL VL + +    GF +A  DL  R  G
Sbjct: 908 YQLRGRVGRSKTRAYAYFTTPANRVITETAEKRLKVLSDLDTLGAGFQLASHDLDIRGAG 967

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            ++G +QSG         EL+ S+LE A  +AK 
Sbjct: 968 NLVGDEQSGHI--KEVGFELYQSMLEDAILEAKA 999


>gi|330984088|gb|EGH82191.1| transcription-repair coupling protein Mfd [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 1098

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 153/452 (33%), Positives = 228/452 (50%), Gaps = 19/452 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  W    +E       +A  +  L  R   ++  G+ +   G    +      +  
Sbjct: 507 KLNDPTWLQSLKEAQVSALSVAKDLITL--RTARERSTGVILKPAGDSYDRFAETFAYDE 564

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q+ AI DI+ D++    M R++ GDVG GKT VA+ A     + G Q  ++AP  +L
Sbjct: 565 TADQKKAIADIMSDLTSGKPMDRLICGDVGFGKTEVAMRAAFMMADQGYQVAVLAPTTLL 624

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY       + T   V +   N   A  RK L     G   I+IGTH L Q  I + 
Sbjct: 625 AQQHYSTFCSRFEETPHKVMLANKNTFSALERKQLS---KGDVQIVIGTHRLLQGDINFR 681

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+IVDE+H FGV+Q+ +L       H+L M ATPIPRTL +   G  D+S I   PA
Sbjct: 682 NLGLIIVDEEHLFGVKQKEQLRTVRGNKHLLSMAATPIPRTLGMAISGIRDMSIIATPPA 741

Query: 454 GRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            R  ++T++   N  D VI E ++  +S   + +++  +I    +      V+   SL  
Sbjct: 742 RRLSVRTLLREQN--DRVIQEAVQREMSRSGQVFYLHNRIGSMPD-----CVKHLQSLIP 794

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
           +  + IA++HG M + +   +M +F+N    +L+ TTVIE+GIDV +A+ +I+E A+  G
Sbjct: 795 N--ARIAMVHGDMREDEMFDIMLAFRNREYDILVGTTVIEIGIDVPNANTLIVEKADALG 852

Query: 573 LAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           L QLHQLRGRVGR    +   LL +    ++      +    N  +GF+IA  D++ R  
Sbjct: 853 LGQLHQLRGRVGRSTRQAYAYLLSNVSTGVANMRLKAMEAATNLGEGFVIARHDMEIRGI 912

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           GEILG +QSG    +     L+  LLE A K 
Sbjct: 913 GEILGEEQSGHVHRI--GFALYMRLLEQAIKA 942


>gi|153010961|ref|YP_001372175.1| transcription-repair coupling factor [Ochrobactrum anthropi ATCC
            49188]
 gi|151562849|gb|ABS16346.1| transcription-repair coupling factor [Ochrobactrum anthropi ATCC
            49188]
          Length = 1170

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 134/447 (29%), Positives = 227/447 (50%), Gaps = 19/447 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
                 R+      LL     L+ +  + +      +     +  +     P+  T  Q +
Sbjct: 573  GAWQMRKAKLKKRLLEIAGHLIQIAAERQMRGAPVMTPPDGLYAEFSARFPYDETDDQLT 632

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ +  D++    M R++ GDVG GKT VAL A   A  +G Q  I+ P  +L++QH++
Sbjct: 633  AIESVADDLAAGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAIVVPTTLLSRQHFK 692

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               K      I +   +  +       A + +  G   I++GTHAL  +SI++  L L+I
Sbjct: 693  TFSKRFHGLPINLAHASRLVGTKELAAAKKGLEEGTVDIVVGTHALLGNSIKFKNLGLLI 752

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++
Sbjct: 753  IDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVR 812

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T + P + +  + E L      G +++++CP+I +  E            L  H     +
Sbjct: 813  TFVSPFDPL-VIRETLLRERYRGGQSFYVCPRISDLGEIE--------EFLKTHVPELKV 863

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+Q
Sbjct: 864  AVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQ 923

Query: 579  LRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
            LRGRVGR  +  +  L   P    L++ +  RL VL++ +    GF +A  D+  R  G 
Sbjct: 924  LRGRVGRS-KQRAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGN 982

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIA 659
            +LG +QSG         EL+  +LE A
Sbjct: 983  LLGEEQSGHI--KEVGFELYQQMLEEA 1007


>gi|224531763|ref|ZP_03672395.1| transcription-repair coupling factor [Borrelia valaisiana VS116]
 gi|224511228|gb|EEF81634.1| transcription-repair coupling factor [Borrelia valaisiana VS116]
          Length = 1124

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 141/436 (32%), Positives = 228/436 (52%), Gaps = 19/436 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + +         P+  T  Q +
Sbjct: 532 WIKNKANAKKRIEEIADKLIELYSKRESIKGIKYP--KDNEFQLLFESEFPYDETPDQIT 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +      + L+ + +G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNTENRILKELKNGEIDIIIGTHKILSKKFTCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIKISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPKNRVKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE      ++++E+         + 
Sbjct: 770 AYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--HYLKTLIEKLT-----PYAR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGDEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    D   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSKKAYAYFLYQDSEKLNERSIERLRAITEFSDLGSGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQ 648
           +LG +Q G  + +   
Sbjct: 940 LLGREQHGEIESIGLD 955


>gi|241762219|ref|ZP_04760301.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
 gi|241373266|gb|EER62885.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
          Length = 1167

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 132/450 (29%), Positives = 230/450 (51%), Gaps = 17/450 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W +   +       +AGQ+     ++  ++        +       +   P+  T+ QE 
Sbjct: 568  WQARKSKMKERIRAIAGQLMATAAQRALRQAPVA--LADPASYPVFVDRFPYQETEDQEH 625

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI D+++D+++   M R++ GDVG GKT VAL A   A  +G Q  ++ P  +LA+QHY 
Sbjct: 626  AISDVIEDLAKGKPMDRLICGDVGFGKTEVALRAAFVAAMSGLQVALVCPTTLLARQHYS 685

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +  +   + +  ++  +P    +   E +A G   I+IGTHA+   +I + +L LVI
Sbjct: 686  NFLERFEGFPLQIGRLSRLVPAKEAKACREALADGTIDIVIGTHAILSKTIDFNRLGLVI 745

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+  FGV  + +L       H L +TATPIPRTL +   G  ++S I   P  R  ++
Sbjct: 746  VDEEQHFGVVHKERLKALKNDVHQLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLAVR 805

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            + ++P + +  + E L      G +++ + P+I +  +   + + E+   +         
Sbjct: 806  SYVMPWDPVA-IREALLREHYRGGQSFIVVPRISDLADLE-KFLSEQVPEI------RFV 857

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M+  + E+ M +F +    +L++TT++E G+D+  A+ +I+  A+ FGL+QL+Q+
Sbjct: 858  IAHGQMAATEVENRMSAFYDKKFDVLLSTTIVESGLDIPSANTMIVYRADRFGLSQLYQI 917

Query: 580  RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR +  +   L    +  +S+ +  RL +L   +    GF +A  DL  R  G +L
Sbjct: 918  RGRVGRSKTRAYAYLTTPVNHSISETAEKRLHILSTLDSLGAGFQLASHDLDIRGAGNLL 977

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            G +QSG         EL+ S+LE A   AK
Sbjct: 978  GDEQSGHI--KEVGFELYQSMLEDAILVAK 1005


>gi|269125277|ref|YP_003298647.1| transcription-repair coupling factor [Thermomonospora curvata DSM
            43183]
 gi|268310235|gb|ACY96609.1| transcription-repair coupling factor [Thermomonospora curvata DSM
            43183]
          Length = 1168

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 137/460 (29%), Positives = 233/460 (50%), Gaps = 19/460 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +AG++  L          G     +    +++    P++ T  Q 
Sbjct: 563  DWAKSKARARKAVRQIAGELIRLY--SARMATPGHAFGPDTPWQRELEDAFPYTETADQL 620

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+++  DM +   M R++ GDVG GKT +A+ A   A++ G Q  ++ P  +L QQH 
Sbjct: 621  AAIEEVKADMEKPVPMDRLICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHL 680

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      ++V+ ++     A   + L  +A G   ++IGTH LF    ++  L LV
Sbjct: 681  STFAERFAPFPVVVKPLSRFQTDAEVEQTLRGLADGTVDLVIGTHRLFSAQARFKDLGLV 740

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L +  T   VL M+ATPIPRTL +   G  ++S I   P  R PI
Sbjct: 741  IIDEEQRFGVEHKEELKRLRTQVDVLAMSATPIPRTLEMGLTGIREMSTILTPPEERHPI 800

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T + P +   ++   ++  L    + +++  ++        RS+      L E    + 
Sbjct: 801  LTFVGPYDD-KQIAAAIRRELLREGQVFFVHNRV--------RSIDRVAAKLKELVPEAR 851

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IA  HG+M++   E VM  F      +L+ATT++E G+D+ +A+ +I++ A+ +GL+QLH
Sbjct: 852  IATAHGQMNEHQLEKVMVDFWEKNYDVLVATTIVESGLDIPNANTLIVDRADTYGLSQLH 911

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGRG E      LY P  PLS+ ++ RL+ +    +   G  +A +DL+ R  G 
Sbjct: 912  QLRGRVGRGRERGYAYFLYPPESPLSETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGN 971

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            ILG++QSG         +L+  ++  A ++ K     +P+
Sbjct: 972  ILGVEQSGH--VAGVGFDLYVRMVGEAVRELKAKAGGEPE 1009


>gi|84497836|ref|ZP_00996633.1| putative transcriptional-repair coupling factor [Janibacter sp.
            HTCC2649]
 gi|84381336|gb|EAP97219.1| putative transcriptional-repair coupling factor [Janibacter sp.
            HTCC2649]
          Length = 1204

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 134/483 (27%), Positives = 235/483 (48%), Gaps = 17/483 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   Y + +A ++  L          G   + +    +++     +  T  Q 
Sbjct: 595  DWKTTKSKARRYVKQIAAELIQLY--SARMATKGHAFSKDTPWQRELEDAFAYIETPDQL 652

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S+I ++  DM ++  M R++ GDVG GKT +A+ A   A++ G Q  ++ P  +L QQH 
Sbjct: 653  SSIDEVKADMEREVPMDRLICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHL 712

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V+ ++    +      LE +A+G   ++IGTH L  DS+ +  L LV
Sbjct: 713  QTFTERYAPFPVTVKPLSRFQSKKETDLVLEGLANGSVDLVIGTHRLLSDSVHFKDLGLV 772

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ + +L Q  TA  VL M+ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 773  VVDEEQRFGVEHKEQLKQLRTAVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPV 832

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       ++   ++  +    + ++I  ++   +         R   L     + I
Sbjct: 833  LTYVGAYEE-KQITAAVRREMLREGQVFYIHNKVSTIE-----KAAARIRELVPE--ARI 884

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M +   E V+  F      +L+ TT++E G+D+ +A+ +I+E A+  GL+QLHQ
Sbjct: 885  ATAHGKMGEHRLEQVVLDFWENKFDVLVCTTIVETGLDISNANTLIVERADRLGLSQLHQ 944

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  PL++ ++ RL  + +  D   G  +A +DL+ R  G +
Sbjct: 945  LRGRVGRGRERAYSYFLYPPENPLTETAHDRLQTIASHTDLGAGMQVAMKDLEIRGAGNL 1004

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +QSG         +L+  L+  A    +  + ++     +       L + Y   E 
Sbjct: 1005 LGGEQSGHI--AGVGFDLYVRLVGEAVSSFRGDIDEEIGEIKIELPVDAHLPHDYVPGER 1062

Query: 694  FQF 696
             + 
Sbjct: 1063 LRL 1065


>gi|307298712|ref|ZP_07578515.1| transcription-repair coupling factor [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915877|gb|EFN46261.1| transcription-repair coupling factor [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 1012

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 134/454 (29%), Positives = 229/454 (50%), Gaps = 17/454 (3%)

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLL-MRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                 T+  R++   ++ +   I+ L  +    +   G+P+  + ++ +    + P+  
Sbjct: 413 LNSLRGTAWTRQKSKVNKEVKALISDLSNLYGSREVTSGVPLTGDSEMEKGFRDSFPYVE 472

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q+ A++++++D+     M R++ GD G GKT VAL A    V +G Q  ++ P  +L
Sbjct: 473 TEDQQKAVEEVMEDLQSTKPMDRLISGDAGYGKTEVALRAAFRTVVSGKQVAVLVPTTVL 532

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QHYE  ++      I VEI+        R K L+++  G+  +++GTH+L    + + 
Sbjct: 533 ARQHYENFERRLNPFGIRVEILDRYRTDVQRNKLLKKLKKGEVDVVVGTHSLLSKEVGFA 592

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L LV+VDE+  FGV Q+    +     +VL M+ATPIPRTL ++  G  D+S I+  PA
Sbjct: 593 DLGLVVVDEEQLFGVLQKEHFKKLRLQVNVLSMSATPIPRTLYMSLSGLRDLSIISTPPA 652

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           GR   +  +  IN    +   +    + G +  ++  ++ E +        E  + L + 
Sbjct: 653 GRTSPEIYVGQINDR-LIRTAVLRETNRGGQTIFVHNRVTELQ--------ELLSRLRDL 703

Query: 514 FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                I + HG+M+    E  +  F  G   +L+ TT+IE G+DV +A+ +I++++  +G
Sbjct: 704 LPEVKIDVAHGQMNKSAFERTIRDFYLGELDMLLCTTIIESGVDVPNANTLIVDDSHRYG 763

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           LAQL+QLRGRVGR    +    LY P  LS  S  RL  LK       G  IA  DL+ R
Sbjct: 764 LAQLYQLRGRVGRSNRRAFSYFLYDPKRLSDPSRERLKALKEFSGAGSGMKIAMRDLEIR 823

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
             G +LG +Q G          L+  ++E A ++
Sbjct: 824 GFGTLLGAEQHGNIN--SVGLYLYREMVEKAMRE 855


>gi|313895795|ref|ZP_07829349.1| DEAD/DEAH box helicase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975220|gb|EFR40681.1| DEAD/DEAH box helicase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 412

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 124/421 (29%), Positives = 212/421 (50%), Gaps = 21/421 (4%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   ++  RGVG + +  L ++            DLL Y+P ++ D+    +I+++    
Sbjct: 3   LEDGINKVRGVGIQKAAALRRL------GIETVSDLLTYYPRAYEDQSRITRIADLRPGT 56

Query: 69  IVTITGYISQHSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
             TI G I        ++R       L+ DGTG    ++F ++   LK+   EGR+I ++
Sbjct: 57  RATIVGVIHTVVERPTRRRGFTVLTALVGDGTGCAQAVWFNQR--FLKSKLREGRRIFLS 114

Query: 127 GKIKKLKNR------IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL- 179
           GK               +    ++       +   I  +Y+   GL+    ++++  AL 
Sbjct: 115 GKADYAYGGGGQLALTQITALEFLGAEESPASRLGILPIYAATEGLTQKQLRQMMEYALR 174

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
                L E +   +L +      A+AF  IH P++A++    S AR RLA++EL   Q  
Sbjct: 175 ETAAELTETLPDAVLTEYGLVGRADAFRRIHFPKRAEEL---SAARRRLAFEELYLIQCG 231

Query: 240 LLLMRKQF-KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           LL ++K+  + + GI     G     +L  +PF+ T+ Q++  +++ +DM     M R++
Sbjct: 232 LLALKKRSVESQRGIAHRENGARVAAVLEALPFTLTEDQQTVWREVARDMESPLPMRRLV 291

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           QGDVGSGKT +AL+A+   VE+G Q   MAP  ILA+QHY+++++      I V  ++G 
Sbjct: 292 QGDVGSGKTAIALLALVKTVESGRQGAFMAPTEILARQHYDYLQELLTPLGIRVAFLSGR 351

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           + +  R +    +A  +  I++GTHAL +D + +  L LV+ DEQHRFGV QR  L ++A
Sbjct: 352 LAKKARTETDAALAAHEVDIVVGTHALIEDHVAFAALGLVVTDEQHRFGVAQRSALEKRA 411

Query: 419 T 419
            
Sbjct: 412 R 412


>gi|262037132|ref|ZP_06010624.1| transcription-repair coupling factor [Leptotrichia goodfellowii
           F0264]
 gi|261748820|gb|EEY36167.1| transcription-repair coupling factor [Leptotrichia goodfellowii
           F0264]
          Length = 1019

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 136/435 (31%), Positives = 223/435 (51%), Gaps = 15/435 (3%)

Query: 222 SPARERLAYD-ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
              R++LA D E  A ++  +  ++Q +         +    ++     PF  T+ Q+ A
Sbjct: 428 KKKRQKLAEDIEKFAAELIKIQAQRQSQNG--FVYGKDTVWQEEFEAQFPFEETEDQKKA 485

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I D+ +DM     M RI+ GDVG GKT VA+ A   A+E   Q  ++AP  +LA+QHY+ 
Sbjct: 486 INDVKKDMEGPYIMDRIVCGDVGYGKTEVAMRAAFKAIENSRQVALIAPTTVLAEQHYKR 545

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
             +  +N  + +E ++  + Q+  ++ L+ + +G   ++IGTH L  + +++  L L+I+
Sbjct: 546 FMQRYENYPVTIENLSR-LTQSKSKEILKNMKNGVTDLVIGTHRLLSEDVEFNNLGLLII 604

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+ +FGV+ +  + +K     VL +TATPIPRTL +  LG  +IS I   P  R PI T
Sbjct: 605 DEEQKFGVKAKETIKKKRQKVDVLTLTATPIPRTLNMALLGIREISVIDTPPTNRLPIIT 664

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            +          + +   LS   + ++I   ++       +  +E    +   F   I  
Sbjct: 665 EVEDWEEEVVK-KAILKELSRDGQVFYIYNDVKS-----MKYKIEELRKILPDFV-KIEF 717

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG++   + +  +  F+ G   +L+A+T+IE GID+ +A+ I+IEN    GL+Q++QLR
Sbjct: 718 IHGQLLPKEIKDKIRRFEQGEFDILLASTIIENGIDIPNANTILIENFNALGLSQVYQLR 777

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE----DGFLIAEEDLKQRKEGEILGI 636
           GRVGR      C LL     +K    +   ++  E     GF I+ EDLK R  GEILG 
Sbjct: 778 GRVGRSNRQGYCYLLKTRTATKKGQKKEESMQKVEGIKSGGFQISMEDLKIRGAGEILGE 837

Query: 637 KQSGMPKFLIAQPEL 651
           KQ G  +       L
Sbjct: 838 KQHGTIETFGYDLYL 852


>gi|62317564|ref|YP_223417.1| transcription-repair coupling factor [Brucella abortus bv. 1 str.
            9-941]
 gi|189022818|ref|YP_001932559.1| Mfd, transcription-repair coupling factor [Brucella abortus S19]
 gi|237817111|ref|ZP_04596103.1| transcription-repair coupling factor [Brucella abortus str. 2308 A]
 gi|254691061|ref|ZP_05154315.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 6
            str. 870]
 gi|254698846|ref|ZP_05160674.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 2
            str. 86/8/59]
 gi|254732293|ref|ZP_05190871.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 4
            str. 292]
 gi|256256246|ref|ZP_05461782.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 9
            str. C68]
 gi|260544801|ref|ZP_05820622.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260756658|ref|ZP_05869006.1| transcription-repair coupling factor [Brucella abortus bv. 6 str.
            870]
 gi|260760089|ref|ZP_05872437.1| transcription-repair coupling factor [Brucella abortus bv. 4 str.
            292]
 gi|260763327|ref|ZP_05875659.1| transcription-repair coupling factor [Brucella abortus bv. 2 str.
            86/8/59]
 gi|260882475|ref|ZP_05894089.1| transcription-repair coupling factor [Brucella abortus bv. 9 str.
            C68]
 gi|297249604|ref|ZP_06933305.1| transcription-repair coupling factor [Brucella abortus bv. 5 str.
            B3196]
 gi|62197757|gb|AAX76056.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 1
            str. 9-941]
 gi|189021392|gb|ACD74113.1| Mfd, transcription-repair coupling factor [Brucella abortus S19]
 gi|237787924|gb|EEP62140.1| transcription-repair coupling factor [Brucella abortus str. 2308 A]
 gi|260098072|gb|EEW81946.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260670407|gb|EEX57347.1| transcription-repair coupling factor [Brucella abortus bv. 4 str.
            292]
 gi|260673748|gb|EEX60569.1| transcription-repair coupling factor [Brucella abortus bv. 2 str.
            86/8/59]
 gi|260676766|gb|EEX63587.1| transcription-repair coupling factor [Brucella abortus bv. 6 str.
            870]
 gi|260872003|gb|EEX79072.1| transcription-repair coupling factor [Brucella abortus bv. 9 str.
            C68]
 gi|297173473|gb|EFH32837.1| transcription-repair coupling factor [Brucella abortus bv. 5 str.
            B3196]
          Length = 1170

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 229/452 (50%), Gaps = 21/452 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    +IA  L++   + +      +     +  +     P+  T
Sbjct: 568  DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQMRGAPVMTPPDGLYAEFAARFPYDET 627

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q +AI+ +  D++Q   M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L+
Sbjct: 628  DDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLS 687

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH++          I V   +  +         + +  G   I++GTHAL   SI++  
Sbjct: 688  RQHFKTFSNRFHGLPINVAHASRLVGAKGLAATKKGLEEGTVDIVVGTHALLGSSIKFKN 747

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 748  LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 807

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +++++ P+I +  +            L EH 
Sbjct: 808  RMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVVPRIADLTDIE--------EFLKEHV 858

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                +A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 859  PELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGL 918

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
            AQL+QLRGRVGR  +  +  L   P    L++ +  RL VL++ +    GF +A  D+  
Sbjct: 919  AQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDI 977

Query: 628  RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G +LG +QSG         EL+  +LE A
Sbjct: 978  RGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 1007


>gi|188583862|ref|YP_001927307.1| transcription-repair coupling factor [Methylobacterium populi BJ001]
 gi|179347360|gb|ACB82772.1| transcription-repair coupling factor [Methylobacterium populi BJ001]
          Length = 1200

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 141/485 (29%), Positives = 232/485 (47%), Gaps = 27/485 (5%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKK 249
            +LL +        A           D       + R A  +    ++A  L++       
Sbjct: 577  ELLTRYGSEDSEVAL----------DRLGGGAWQARKAKMKRRILEMAGELIKVAAARFV 626

Query: 250  EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
            +    +     + ++      F  T+ Q +AI  +L D++    M R++ GDVG GKT V
Sbjct: 627  KPAPSLKAPEGLYEEFAARFAFQETEDQANAIDAVLDDLNAGRPMDRLVCGDVGFGKTEV 686

Query: 310  ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            AL A  AA  +G Q  ++ P  +LA+QHY    +  +   I V  ++  +    +R+   
Sbjct: 687  ALRAAFAAAISGKQVAVVVPTTLLARQHYRTFAERFKGLPINVAQLSRFVSAGDQRQTRA 746

Query: 370  RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             +A G+  I++GTHAL   ++ +  L L+IVDE+  FGV  + +L       HVL ++AT
Sbjct: 747  GLAEGKVDIVVGTHALLAKNVAFKDLGLIIVDEEQHFGVAHKERLKALQADVHVLTLSAT 806

Query: 430  PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            PIPRTL L   G  ++S I   P  R  ++T + P + +  + E L      G +A+++ 
Sbjct: 807  PIPRTLQLAMTGVRELSIIATPPVDRLAVRTFVTPFDPL-LIREALLRERYRGGQAFYVV 865

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            P+IE+  E       E           ++A+ HG+M+    E VM +F  G   +L++TT
Sbjct: 866  PRIEDLAEVKRFLDQEM-------PEVTVAVAHGQMAAGQLEDVMTAFYEGKYDVLLSTT 918

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
            ++E G+D+  A+ +I+  A+ FGLA L+QLRGRVGR +  +  +        L+  +  R
Sbjct: 919  IVESGLDIPTANTLIVHRADMFGLAALYQLRGRVGRSKARAYALFTTPANRQLTAQAEQR 978

Query: 608  LSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            L VL++ +    GF +A  DL  R  G +LG  QSG         EL+  +LE A    K
Sbjct: 979  LKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDAQSGHI--KEVGYELYQQMLEDAVTALK 1036

Query: 665  HILTQ 669
              + +
Sbjct: 1037 AGIEE 1041


>gi|320010356|gb|ADW05206.1| transcription-repair coupling factor [Streptomyces flavogriseus ATCC
            33331]
          Length = 1176

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 137/490 (27%), Positives = 233/490 (47%), Gaps = 26/490 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT   +      + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 575  DWTKTKQRAKKAVKEIAADLIKLY--SARMAAPGHAFGPDTPWQRELEDAFPYAETPDQL 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 633  STIAEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V  ++        +  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 693  GTFTERYAQFPVNVRALSRFQSDTESKATLEGLKDGSVDLVIGTHRLFSSETKFKDLGLV 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 753  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 813  LTFVGPYEE-KQIGAAVRRELLREGQVFYIHNRVESID-----RAAARLREIVPE--ARI 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M +   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 865  ATAHGQMGESQLEQVVVDFWEKRFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 924

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG +      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 925  LRGRVGRGRDRGYSYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 984

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-------Y 686
            LG +QSG         +L+  ++  A  D +  +  D  +       ++I L       +
Sbjct: 985  LGGEQSGHI--AGVGFDLYIRMVGEAVADYRAAV--DGGVEEEPPLEVKIELPVDAHVPH 1040

Query: 687  LYQYNEAFQF 696
             Y   E  + 
Sbjct: 1041 DYAPGERLRL 1050


>gi|115524796|ref|YP_781707.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            BisA53]
 gi|115518743|gb|ABJ06727.1| transcription-repair coupling factor [Rhodopseudomonas palustris
            BisA53]
          Length = 1179

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 135/446 (30%), Positives = 224/446 (50%), Gaps = 19/446 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W +   +       +AG++  +   +Q ++   I +     +  +     P+  T+ Q +
Sbjct: 573  WQARKAKLKNRIREMAGELIKIAAERQLRETQKIAVQP--HLYDEFCARFPYEETEDQLA 630

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI   L D+     M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA+QH  
Sbjct: 631  AINAALHDLETGKPMDRLVCGDVGFGKTEVALRAAFAVALEGKQVAVVVPTTLLARQHTR 690

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
                  +   + +   +  +         + IA G   I++GTHAL   +I++  L L++
Sbjct: 691  TFADRFRGLPVTIGQASRLVSTKELTLVKKGIADGSIDIVVGTHALLGKAIKFKDLGLIV 750

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+  FGV  + +L Q     HVL ++ATPIPRTL L   G  D+S I   P  R  ++
Sbjct: 751  VDEEQHFGVTHKERLKQLRAEVHVLTLSATPIPRTLQLALTGVRDLSIIASAPVDRLAVR 810

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T + P + +  + E L      G +A+++CP+IE+             + L +H     +
Sbjct: 811  TFVAPHDPL-MIREALLRERYRGGQAFYVCPRIEDLAGVK--------DFLDKHVPEMKV 861

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M     E ++ +F +G   +L++T+++E G+D+ +A+ +I+  A+ FGLAQL+Q
Sbjct: 862  AVAHGQMPPTVIEDIISAFYDGKYDILLSTSIVESGLDIPNANTLIVHRADMFGLAQLYQ 921

Query: 579  LRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR +  +  +        ++  +  RL VL++ E    GF +A  DL  R  G +
Sbjct: 922  LRGRVGRSKLRAYALFTLPSTHKITAQAERRLKVLQSLETLGAGFQLASHDLDIRGSGNL 981

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA 659
            LG +QSG         EL+ S+LE A
Sbjct: 982  LGEEQSGHI--KEVGFELYQSMLEEA 1005


>gi|119953404|ref|YP_945613.1| transcription-repair coupling factor [Borrelia turicatae 91E135]
 gi|119862175|gb|AAX17943.1| transcription-repair coupling factor [Borrelia turicatae 91E135]
          Length = 1122

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 137/439 (31%), Positives = 225/439 (51%), Gaps = 19/439 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A ++  L ++++  K    P   + +         P+  T  Q +
Sbjct: 533 WEKKKAYAKKRIDAIADKLVELYVQRESSKGFQYP--QDNEWQLLFESEFPYDETPDQLT 590

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI +I QDM     M R+L GDVG GKT VA+ A   AV    Q  I++P  IL +QH+ 
Sbjct: 591 AISEIKQDMMSLKVMDRLLCGDVGFGKTEVAMRAAFKAVMGKKQVAILSPTTILTEQHFN 650

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  +N  I + +++  + ++  R  ++++  G+  IIIGTH +    I Y  L L+I
Sbjct: 651 TFKQRFKNFPINIAMMSRFIKKSKERDIIKKLETGEIDIIIGTHKILSKKIIYKNLGLII 710

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 711 IDEEQRFGVKEKEKLKEIKISVDCLALSATPIPRSLHMSLIKLRDISVLKTPPQNRIKIE 770

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           T +   +   I   IE     LS   + +++   I+E               +  +  + 
Sbjct: 771 TYVEEFSELLIKHAIEN---ELSRDGQVFFVHHNIQELDLIK-----AMLEKMVPY--AR 820

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA IH R+     E++M  F N + ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 821 IATIHARLQGDQIENIMHDFINKSYQVLLATTIIENGIDIENANTIIINNANRFGLAQLY 880

Query: 578 QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR  + +    LY  +  L++++  RL  +    +   GF IA +D++ R  G 
Sbjct: 881 QLRGRVGRSSQKAFAYFLYKENSSLNESAIERLRAISEFSELGTGFQIAMKDMEIRGVGN 940

Query: 633 ILGIKQSGMPKFLIAQPEL 651
           +LG +Q G  + +     L
Sbjct: 941 LLGREQHGEIESIGLDYYL 959


>gi|294781777|ref|ZP_06747110.1| transcription-repair coupling factor [Fusobacterium sp. 1_1_41FAA]
 gi|294481887|gb|EFG29655.1| transcription-repair coupling factor [Fusobacterium sp. 1_1_41FAA]
          Length = 979

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 146/459 (31%), Positives = 252/459 (54%), Gaps = 15/459 (3%)

Query: 225 RERLAYD-ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           + RL+ D E+ A +I  +  ++          + +  + ++     PF+ T  Q  AI+D
Sbjct: 408 KARLSEDIEIFAKEIIKIQAKRNLANG--FKFSKDTVMQEEFEEAFPFTETPGQLKAIED 465

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           + +DM     M R++ GDVG GKT VA+ A   A+    Q V++ P  +LA+QHYE   +
Sbjct: 466 VKRDMESGKVMDRLVCGDVGYGKTEVAIRAAFKAIMDEKQVVLLVPTTVLAEQHYERFSE 525

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
             +N  I +EI++    +  + ++L++I +G A +IIGTH L  D I+Y  + L+I+DE+
Sbjct: 526 RFKNYPINIEILSRVQTKKEQEESLKKIENGSADLIIGTHRLLSDDIKYNDIGLLIIDEE 585

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            +FGV+ + KL +      +L +TATPIPRTL L+ LG  D+S I   P GR+ I+T  I
Sbjct: 586 QKFGVKAKEKLKKLKGDIDILTLTATPIPRTLNLSLLGIRDLSIIDTSPEGRQKIQTEYI 645

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             N+ D + + +   +S   + ++I   ++  +        +    L   +   +  IHG
Sbjct: 646 DNNK-DLIRDIILTEVSREGQVFYIFNSVKRIE-----MKSKELRELLPEYI-KVDYIHG 698

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M   D +  + +F+NG   +LIATT+IE GID+ +A+ +IIE  E  GL+Q++QLRGR+
Sbjct: 699 QMLARDIKRAIHNFENGNTDVLIATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGRI 758

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDLKQRKEGEILGIKQSGM 641
           GR  + S C +L +   +KN+  R   ++  ++  G  ++ ED K R  GEILG KQ G 
Sbjct: 759 GRSNKKSYCYMLMNENKTKNAQKREESIREFDNLTGIDLSMEDSKIRGVGEILGEKQHGA 818

Query: 642 PK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            +   + +    L++ +L++  ++ + +   + +L   R
Sbjct: 819 VETFGYNLYMKMLNEEILKLKGENEEELEDVNIELNFPR 857


>gi|119960591|ref|YP_947136.1| transcription-repair coupling factor [Arthrobacter aurescens TC1]
 gi|119947450|gb|ABM06361.1| transcription-repair coupling factor [Arthrobacter aurescens TC1]
          Length = 1210

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 131/483 (27%), Positives = 228/483 (47%), Gaps = 17/483 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W S   +     + +AG++  L          G     +    +++    P+  T  Q 
Sbjct: 608  DWASTKSKARKAVKEIAGELIRLY--SARMASRGHAFAPDTPWQRELEEAFPYVETPDQL 665

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM ++  M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LAQQHY
Sbjct: 666  TTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHY 725

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +      + V+ ++        ++  E +  G   ++IGTH L     Q+  L LV
Sbjct: 726  ETFTERFSGFPLRVKPLSRFQSSKEAKETAEGVKSGAVDVVIGTHRLLSKDFQFKDLGLV 785

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L +  T   VL M+ATPIPRTL ++  G  + S +   P  R P+
Sbjct: 786  IVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPV 845

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     +    ++  L    + +++  ++   +      +  +   L     + +
Sbjct: 846  LTYVGPYTN-KQTSAAIRRELMREGQVFFVHNRVSSIE-----RIAAQIRELVPE--ARV 897

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+MS+   E ++  F      +L+ TT+IE G+D+ +A+ +I++ A+ +GL+QLHQ
Sbjct: 898  EVAHGQMSESRLEKIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDGADKYGLSQLHQ 957

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY    PL + +  RL  +    +   G  +A +DL+ R  G +
Sbjct: 958  LRGRVGRGRERAYAYFLYPSEKPLGEVALERLKAVAAHNELGAGMQLAMKDLEIRGAGNL 1017

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +QSG         +L+  L+  A  + +    +      +       L + Y   E 
Sbjct: 1018 LGGEQSGHI--QGVGFDLYIRLVGEAVAEYRGEAEEKAAEMKIELPVNAHLPHDYVPGER 1075

Query: 694  FQF 696
             + 
Sbjct: 1076 LRL 1078


>gi|83269545|ref|YP_418836.1| transcription repair coupling factor [Brucella melitensis biovar
           Abortus 2308]
 gi|82939819|emb|CAJ12827.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
           motif A (P-loop):Haem peroxidase:Transcription-repair
           coupli [Brucella melitensis biovar Abortus 2308]
          Length = 1122

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 229/452 (50%), Gaps = 21/452 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + R A  +    +IA  L++   + +      +     +  +     P+  T
Sbjct: 520 DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQMRGAPVMTPPDGLYAEFAARFPYDET 579

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q +AI+ +  D++Q   M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L+
Sbjct: 580 DDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLS 639

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH++          I V   +  +         + +  G   I++GTHAL   SI++  
Sbjct: 640 RQHFKTFSNRFHGLPINVAHASRLVGAKGLAATKKGLEEGTVDIVVGTHALLGSSIKFKN 699

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 700 LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 759

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  ++T + P + +  + E L      G +++++ P+I +  +            L EH 
Sbjct: 760 RMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVVPRIADLTDIE--------EFLKEHV 810

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 811 PELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGL 870

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
           AQL+QLRGRVGR  +  +  L   P    L++ +  RL VL++ +    GF +A  D+  
Sbjct: 871 AQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDI 929

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG +QSG         EL+  +LE A
Sbjct: 930 RGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 959


>gi|291445280|ref|ZP_06584670.1| transcriptional-repair coupling factor [Streptomyces roseosporus NRRL
            15998]
 gi|291348227|gb|EFE75131.1| transcriptional-repair coupling factor [Streptomyces roseosporus NRRL
            15998]
          Length = 1184

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 137/488 (28%), Positives = 234/488 (47%), Gaps = 22/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT   +      + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 583  DWTKTKQRAKKAVKEIAADLIKLY--SARMAAPGHAFGADTPWQRELEDAFPYAETPDQL 640

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQHY
Sbjct: 641  STIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHY 700

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V  ++    ++  +  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 701  GTFTERYSQFPVNVRALSRFQSESESKATLEGLKDGSVDLVIGTHRLFSSETKFKDLGLV 760

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 761  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 820

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 821  LTFVGPYEE-KQIGAAIRRELLREGQVFYIHNRVESID-----RAAARLREIVPE--ARI 872

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 873  ATAHGQMSEAALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 932

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG +      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 933  LRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 992

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-----YLY 688
            LG +QSG         +L+  ++  A  D +  +    +        I + +     + Y
Sbjct: 993  LGGEQSGHI--AGVGFDLYVRMVGEAVADYRAQMEGGAEEEPPLEVKIELPVDAHVPHDY 1050

Query: 689  QYNEAFQF 696
               E  + 
Sbjct: 1051 APGERLRL 1058


>gi|326778864|ref|ZP_08238129.1| transcription-repair coupling factor [Streptomyces cf. griseus
            XylebKG-1]
 gi|326659197|gb|EGE44043.1| transcription-repair coupling factor [Streptomyces cf. griseus
            XylebKG-1]
          Length = 1177

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 139/488 (28%), Positives = 235/488 (48%), Gaps = 22/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT   +      + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 576  DWTKTKQRAKKAVKEIAADLIKLY--SARMAAPGHAFGADTPWQRELEDAFPYAETPDQL 633

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQHY
Sbjct: 634  STIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHY 693

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V  ++    +   R  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 694  GTFTERYSQFPVNVRALSRFQSETESRATLEGLRDGAVDLVIGTHRLFSSETKFKDLGLV 753

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 754  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 813

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 814  LTFVGPYEE-KQIGAAVRRELLREGQVFYIHNRVESID-----RAAARLREIVPE--ARI 865

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 866  ATAHGQMSEAALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 925

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG +      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 926  LRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 985

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA----RKDAKHILTQDPDLT-SVRGQSIRILLYLY 688
            LG +QSG         +L+  ++  A    R   +  + ++P L   +       + + Y
Sbjct: 986  LGGEQSGHI--AGVGFDLYVRMVGEAVADYRAQMEGGVEEEPPLEVKIELPVDAHVPHDY 1043

Query: 689  QYNEAFQF 696
               E  + 
Sbjct: 1044 APGERLRL 1051


>gi|239941833|ref|ZP_04693770.1| putative transcriptional-repair coupling factor [Streptomyces
            roseosporus NRRL 15998]
 gi|239988293|ref|ZP_04708957.1| putative transcriptional-repair coupling factor [Streptomyces
            roseosporus NRRL 11379]
          Length = 1177

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 137/488 (28%), Positives = 234/488 (47%), Gaps = 22/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT   +      + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 576  DWTKTKQRAKKAVKEIAADLIKLY--SARMAAPGHAFGADTPWQRELEDAFPYAETPDQL 633

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQHY
Sbjct: 634  STIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHY 693

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V  ++    ++  +  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 694  GTFTERYSQFPVNVRALSRFQSESESKATLEGLKDGSVDLVIGTHRLFSSETKFKDLGLV 753

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 754  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 813

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 814  LTFVGPYEE-KQIGAAIRRELLREGQVFYIHNRVESID-----RAAARLREIVPE--ARI 865

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 866  ATAHGQMSEAALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 925

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG +      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 926  LRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 985

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-----YLY 688
            LG +QSG         +L+  ++  A  D +  +    +        I + +     + Y
Sbjct: 986  LGGEQSGHI--AGVGFDLYVRMVGEAVADYRAQMEGGAEEEPPLEVKIELPVDAHVPHDY 1043

Query: 689  QYNEAFQF 696
               E  + 
Sbjct: 1044 APGERLRL 1051


>gi|182438215|ref|YP_001825934.1| putative transcriptional-repair coupling factor [Streptomyces griseus
            subsp. griseus NBRC 13350]
 gi|178466731|dbj|BAG21251.1| putative transcriptional-repair coupling factor [Streptomyces griseus
            subsp. griseus NBRC 13350]
          Length = 1177

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 139/488 (28%), Positives = 235/488 (48%), Gaps = 22/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT   +      + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 576  DWTKTKQRAKKAVKEIAADLIKLY--SARMAAPGHAFGADTPWQRELEDAFPYAETPDQL 633

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQHY
Sbjct: 634  STIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHY 693

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V  ++    +   R  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 694  GTFTERYSQFPVNVRALSRFQSETESRATLEGLRDGAVDLVIGTHRLFSSETKFKDLGLV 753

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 754  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 813

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 814  LTFVGPYEE-KQIGAAVRRELLREGQVFYIHNRVESID-----RAAARLREIVPE--ARI 865

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 866  ATAHGQMSEAALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 925

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG +      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 926  LRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 985

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA----RKDAKHILTQDPDLT-SVRGQSIRILLYLY 688
            LG +QSG         +L+  ++  A    R   +  + ++P L   +       + + Y
Sbjct: 986  LGGEQSGHI--AGVGFDLYVRMVGEAVADYRAQMEGGVEEEPPLEVKIELPVDAHVPHDY 1043

Query: 689  QYNEAFQF 696
               E  + 
Sbjct: 1044 APGERLRL 1051


>gi|306992293|gb|ADN19263.1| ATP-dependent DNA helicase RecG [Thermoanaerobacter uzonensis]
          Length = 408

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 152/413 (36%), Positives = 238/413 (57%), Gaps = 8/413 (1%)

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVLPEWIEKDLLQKKSF 199
           P         +N   I  +Y L  GL+ +  +KI+  AL   +  + E+ +++ L +K  
Sbjct: 1   PVLEKSEDFRLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEIEEFFDEEFLFEKGL 60

Query: 200 PSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
             I  A   I+ P+     E     + R  Y EL   Q+AL L+++  K + GI    E 
Sbjct: 61  MDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMALFLVKRSVKGKKGIKF--ER 115

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
              +  L  +PF  T +Q   +K+I+ DM+    M R++QGDVGSGKT+VA  +M  AV+
Sbjct: 116 VELKPFLVGLPFKLTSAQIKVLKEIIADMNSHKVMNRLVQGDVGSGKTVVAACSMYIAVK 175

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G Q  +MAP  ILA+QHY  +K+  +NT I + +++G++  +++++ LE+I +G   I+
Sbjct: 176 NGYQVAMMAPTEILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKKEVLEKIKNGDYDIV 235

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHAL +D + +  L L I DEQHRFGV+QR  LT+K   P VL+MTATPIPRTL L  
Sbjct: 236 VGTHALIEDDVIFNNLGLCITDEQHRFGVRQRALLTKKGENPDVLVMTATPIPRTLALIL 295

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
            GD+DIS I + P+GRK +KT +I  +   +  E     + +G++ Y +CP IEE  + N
Sbjct: 296 YGDLDISIIDQLPSGRKKVKTYVISSSVRKKAYEFAMKEVKKGRQVYVVCPLIEESDKIN 355

Query: 500 FRSVVERFNSLHEHFT--SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             S    +  +++     + + ++HG+M+D DKE VM+ F NG   +L++TTV
Sbjct: 356 AMSAEIVYREIYKDAFKEAKVGLLHGKMNDSDKEKVMEEFVNGKIDILVSTTV 408



 Score = 38.5 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           + + +  G +   + P      E   +        L  +    I ++ G +S  +K+ V+
Sbjct: 170 MYIAVKNGYQVAMMAPT-----EILAKQHYYTLKELFRNTDIKIGLLSGSISPSNKKEVL 224

Query: 535 DSFKNGTCKLLIATT-VIEVGIDVVDASIIIIENAEHFGLAQ 575
           +  KNG   +++ T  +IE  +   +  + I +    FG+ Q
Sbjct: 225 EKIKNGDYDIVVGTHALIEDDVIFNNLGLCITDEQHRFGVRQ 266


>gi|157363476|ref|YP_001470243.1| DEAD/DEAH box helicase domain-containing protein [Thermotoga
           lettingae TMO]
 gi|157314080|gb|ABV33179.1| DEAD/DEAH box helicase domain protein [Thermotoga lettingae TMO]
          Length = 939

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 134/497 (26%), Positives = 246/497 (49%), Gaps = 29/497 (5%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D   +   ++R+   +    +    L+R     +K  G+ +  + ++ ++     P++ T
Sbjct: 356 DRIHSGNWKKRIERVKRNLREKVEELIRIYDTRQKISGLSLPGDPELEKRFAEFFPYAET 415

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q +AI+++L D++    M R+L GD G GKT VAL A    V +G Q  ++ P  +LA
Sbjct: 416 DDQMTAIEEVLSDLANDKPMDRLLCGDAGYGKTEVALRAAFKCVVSGKQVAVLVPTTVLA 475

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY+   +      I V ++  ++    +++ L+ +  G+  +IIGTHAL Q+++++  
Sbjct: 476 RQHYKIFTQRMSPFGIQVRLLDRSISTIMKKEILDGLFRGKIDVIIGTHALLQNNVRFSD 535

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L LVI+DE+  FGV+Q+ K  Q  T  +VL ++ATPIPRTL +   G  D+S I   P G
Sbjct: 536 LGLVIIDEEQSFGVEQKEKFKQLRTNVNVLSLSATPIPRTLHMAMTGMKDLSVINTPPIG 595

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R P+ T +   +    V   +   ++ G +  ++  +I + +        + + +L    
Sbjct: 596 RLPVITYVAKYSN-QLVRGAVLREINRGGQVIYVHNRIHDIQ--------DVYQNLQHII 646

Query: 515 T-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
             + I + HG+M        + SF      +++ T+++E GID+ +A+ II++++  +GL
Sbjct: 647 PEAKIVLAHGKMGIRKLTEAVRSFYEHDSDVILCTSILESGIDIPNANTIIVDDSHRYGL 706

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
           AQL+QLRGRVGR  + +    L+   +S+ +  RL  +K       GF +A  D++ R  
Sbjct: 707 AQLYQLRGRVGRSTKRAFAYFLHDSEISEKALQRLQAIKQLTGSGSGFQLALRDMQIRGV 766

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ---------DPDLTSVRGQSI 681
           G + G +Q G    +          LEI  +  K I  +         D ++  + G+ +
Sbjct: 767 GSVFGFEQHGNINDVGLNL-----YLEIMNQQLKGIKEEKSESRKLFVDTEMEGIPGELV 821

Query: 682 RILLYLYQYNEAFQFIR 698
               Y+    E  +  R
Sbjct: 822 IPPDYVESPLERMRIYR 838


>gi|319408599|emb|CBI82254.1| transcription repair coupling factor [Bartonella schoenbuchensis R1]
          Length = 1166

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 133/457 (29%), Positives = 230/457 (50%), Gaps = 19/457 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    +IA  L+R   +        ++    +  + +   P+  T
Sbjct: 561  DKLGGVAWQTRKARLKKHLLKIAGQLIRIAAERATRSAPALSPPIGLFDEFVACFPYEET 620

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q  AI  +L D++    M R++ GDVG GKT VA+ +   A   G Q  ++ P  +L+
Sbjct: 621  EDQIDAIDAVLGDLAAGKPMDRLICGDVGFGKTEVAIRSAFVAALNGYQVAVVVPTTLLS 680

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QHY+      Q   + +  ++  +      +  + I++G+  I IGTHAL  +SI + +
Sbjct: 681  RQHYKTFISRFQGLPVKIGHVSRLVKAKELAQVKKDISNGRIDIAIGTHALLSESINFSR 740

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S I   P G
Sbjct: 741  LGLLIIDEEQHFGVKHKERLKEIKSDIHVLTLSATPIPRTLGLALSGLRELSLIATPPIG 800

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R P++T I P + +  + E L      G +++++CP+I +               L  H 
Sbjct: 801  RIPVRTFISPFDAV-VIREVLLREYYRGGQSFYVCPRISDLPYVE--------EYLKTHV 851

Query: 515  TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                 A+ HG+M     + +M++F +    +L++TT+IE G+D+  A+ +I+  A+ FGL
Sbjct: 852  PELKFAVAHGQMPVTQFDDIMNAFYDRQYDVLLSTTIIESGLDIPTANTLIVHRADMFGL 911

Query: 574  AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            + L+QLRGRVGR ++ +  +  +     L+  +  R  VL++ +    GF +A  D+  R
Sbjct: 912  SSLYQLRGRVGRSKQRAYALFTFPAGKVLTPTADRRFKVLQSLDTLGAGFQLASYDMDIR 971

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
              G  LG +QSG         EL+  +LE A  + K 
Sbjct: 972  GSGNFLGEEQSGH--VKEVGFELYQKMLEEAVAELKD 1006


>gi|154486604|ref|ZP_02028011.1| hypothetical protein BIFADO_00421 [Bifidobacterium adolescentis
           L2-32]
 gi|154084467|gb|EDN83512.1| hypothetical protein BIFADO_00421 [Bifidobacterium adolescentis
           L2-32]
          Length = 887

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 193/627 (30%), Positives = 289/627 (46%), Gaps = 111/627 (17%)

Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
           ++   EAL+    +P+ + +    +      AEAF  IH+P+     +  + A   L Y+
Sbjct: 264 RQARTEALAA--AIPDIMPEAFRMEHGLMHRAEAFMAIHDPQNR---DGFNKALRTLRYE 318

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           E L  Q AL+  R   +K        + ++    + ++PFS T  Q+  I DI  DM++ 
Sbjct: 319 EALICQTALVQSRDSSRKATATAC-ADTRLKDDFVESLPFSLTDGQQQVIADISDDMARD 377

Query: 292 NRMLRILQGDVGSGK----------------TLVALIAMAAAVEAG-----GQAVIMAPI 330
             M R+LQG+VGSGK                  V +       E       G    M   
Sbjct: 378 YPMQRLLQGEVGSGKTVVAVAAMMQAVGSGKQAVLVAPTQVLAEQHYSSIRGMVDRMCGT 437

Query: 331 GILAQQHYEFIKKYTQNTQ----------------------------------------- 349
           G  A ++ +  +  T++T                                          
Sbjct: 438 GEEADENAKSGESQTKSTHHAVVDESGQVTSGNAPEPQNGGQSDGGQVEKLLDGQSNSLP 497

Query: 350 -IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            I V ++TG M  A RR+ L + A G+  I++ THA F  + Q   L L ++DEQHRFGV
Sbjct: 498 DIPVLLLTGGMKLAARRRVLAQAASGKPCIVVATHAAFSKTFQAPNLALAVIDEQHRFGV 557

Query: 409 QQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           +QR  L  K  TAPH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T ++P   
Sbjct: 558 EQRESLNAKGSTAPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTFVVPEAN 617

Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQI-----------------------------EEK 495
              + E+   ++  +  G++AY +CP+I                             E+ 
Sbjct: 618 GPLMAEMFGLIRKRIDAGERAYVVCPRIDADAKDADDAGGSGDAEVGYAFDATYDLGEDD 677

Query: 496 KESNFR-------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           ++   R        + ER  SL +     IA + GR  D  K  +M  F+ G   +L+AT
Sbjct: 678 EQREQRPPLHSVAEIAERLRSLPQFAGIRIATLTGRDDDKTKSQIMADFEAGVTPILVAT 737

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV  AS ++I +A+ +GL+QLHQLRGRVGRG   S   L+   P   ++  RL
Sbjct: 738 TVIEVGVDVAQASCMVIFDADRYGLSQLHQLRGRVGRGGTESGAFLISRAPEGSDAAKRL 797

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHIL 667
            V+  T DG  IA+ DL+ R  G++LG  QSG      + +      ++E AR +A  ++
Sbjct: 798 DVIAGTLDGAEIAQADLEFRGAGDVLGDAQSGGKSGLKLLRVVKDVKIIEEARAEAAKLV 857

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAF 694
            +DP L     Q    +L   + NE F
Sbjct: 858 AEDPTLQGYV-QLAGAVLDFTRGNETF 883



 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 79/596 (13%), Positives = 166/596 (27%), Gaps = 101/596 (16%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P    D      + E      +    ++     F +  R
Sbjct: 17  RRVGALKSLGVVSVGDALTYYPFRVTDPVPARALREAKIGENMAFAAHVRGVRVFPM-AR 75

Query: 88  RPYKILLNDGTGEI-----------TLLFFYRKT---EMLKNVFFEGRKITVTGKIKKLK 133
           R ++++ +   G+            +L+FF  +    + ++    EG  + V G+     
Sbjct: 76  RGFRLIADVDDGDFARSRHMDASMASLVFFSYRKSYVDWIQRKLHEGALLVVAGEPSVYN 135

Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
           +R+   HP  +  +                  L          EA              +
Sbjct: 136 DRLQFTHPDILTVD-------------PAGEQLRSRSS----EEAAEWDDGFGTEQPAVV 178

Query: 194 LQ-------KKSFPSIAEAFNIIHNPRKAKD----------FEWTSPARERLAYDELLAG 236
            Q       K    S+ EA   +  PR               E      +RL  DE  A 
Sbjct: 179 PQSPTMPNLKYDAASVPEAMRHVCRPRPVYHANSRISSEHIHESIEKCMDRLCGDEYAAA 238

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           Q A  L             +      Q     +         +AI DI         M  
Sbjct: 239 QAARALHGADASDAQHGEFDAPQADRQARTEAL--------AAAIPDI---------MPE 281

Query: 297 ILQGDVGSGKTLVALIAM-----------AAAVEAGGQAVI----MAPIGILAQQHYEFI 341
             + + G      A +A+           A       +A+I    +      +++     
Sbjct: 282 AFRMEHGLMHRAEAFMAIHDPQNRDGFNKALRTLRYEEALICQTALVQSRDSSRKATATA 341

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
              T+     VE +  ++    + + +  I+   A        L Q  +   K ++ +  
Sbjct: 342 CADTRLKDDFVESLPFSLTDGQQ-QVIADISDDMARD-YPMQRLLQGEVGSGKTVVAVAA 399

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
                G  ++  L            ++    R +V    G  + +    K    +   T 
Sbjct: 400 MMQAVGSGKQAVLVAPTQVLAEQHYSS---IRGMVDRMCGTGEEADENAKSGESQTKSTH 456

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520
              ++   +V          G ++             +   V +  +          + +
Sbjct: 457 HAVVDESGQVTSGNAPEPQNGGQS-------------DGGQVEKLLDGQSNSLPDIPVLL 503

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATT-VIEVGIDVVDASIIIIENAEHFGLAQ 575
           + G M    +  V+    +G   +++AT           + ++ +I+    FG+ Q
Sbjct: 504 LTGGMKLAARRRVLAQAASGKPCIVVATHAAFSKTFQAPNLALAVIDEQHRFGVEQ 559


>gi|262066822|ref|ZP_06026434.1| transcription-repair coupling factor [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379488|gb|EFE87006.1| transcription-repair coupling factor [Fusobacterium periodonticum
           ATCC 33693]
          Length = 978

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 252/459 (54%), Gaps = 15/459 (3%)

Query: 225 RERLAYD-ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           + RL+ D E+ A +I  +  ++          + +  + ++     PF+ T  Q  AI+D
Sbjct: 408 KARLSEDIEIFAKEIIKIQAKRNLANG--FKFSKDTVMQEEFEEAFPFTETPGQLKAIED 465

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           + +DM     M R++ GDVG GKT VA+ A   A+  G Q V++ P  +LA+QHYE   +
Sbjct: 466 VKRDMESGKVMDRLVCGDVGYGKTEVAIRAAFKAIMDGKQVVLLVPTTVLAEQHYERFSE 525

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
             +N  I +EI++    +  + ++L++I +  A +IIGTH L  D I+Y  + L+I+DE+
Sbjct: 526 RFKNYPINIEILSRVQTKKEQEESLKKIENASADLIIGTHRLLSDDIKYKDIGLLIIDEE 585

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            +FGV+ + KL +      +L +TATPIPRTL L+ LG  D+S I   P GR+ I+T  I
Sbjct: 586 QKFGVKAKEKLKKLKGDIDILTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIQTEYI 645

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             N+ D + + +   +S   + ++I   ++  +        +    L   +   +  IHG
Sbjct: 646 DNNK-DLIRDIILTEVSREGQVFYIFNSVKRIE-----MKSKELRELLPDYI-KVDYIHG 698

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M   D +  + +F+NG   +LIATT+IE GID+ +A+ +IIE  E  GL+Q++QLRGR+
Sbjct: 699 QMLARDIKRAIHNFENGNTDVLIATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGRI 758

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDLKQRKEGEILGIKQSGM 641
           GR  + S C +L +   ++N+  R   ++  ++  G  ++ ED K R  GEILG KQ G 
Sbjct: 759 GRSNKKSYCYMLMNENKTRNAQKREESIREFDNLTGIDLSMEDSKIRGVGEILGEKQHGA 818

Query: 642 PK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            +   + +    L++ +L++  ++ + +   + +L   R
Sbjct: 819 VETFGYNLYMKMLNEEVLKLKGENEEELEDVNIELNFPR 857


>gi|294813058|ref|ZP_06771701.1| Transcriptional-repair coupling factor [Streptomyces clavuligerus
            ATCC 27064]
 gi|294325657|gb|EFG07300.1| Transcriptional-repair coupling factor [Streptomyces clavuligerus
            ATCC 27064]
          Length = 1206

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 140/488 (28%), Positives = 231/488 (47%), Gaps = 22/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 605  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGPDTPWQRELEDAFPYAETPDQL 662

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQHY
Sbjct: 663  STIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHY 722

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V  ++        +  LE +  G   I+IGTH LF    ++  L LV
Sbjct: 723  GTFSERYGQFPVNVRALSRFQTDTEAKATLEGLKDGAVDIVIGTHRLFSSETKFKDLGLV 782

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 783  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 842

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 843  LTFVGPYEE-KQIGAAIRRELLREGQVFYIHNRVESID-----RAAARLREIVPE--ARI 894

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 895  ATAHGQMSESVLEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 954

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 955  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 1014

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-----YLY 688
            LG +QSG         +L+  ++  A  D +  L    +        I + +     + Y
Sbjct: 1015 LGGEQSGHI--AGVGFDLYVRMVGEAVADYRASLEGGAEEEPPLEVKIELPVDAHVPHDY 1072

Query: 689  QYNEAFQF 696
               E  + 
Sbjct: 1073 APGERLRL 1080


>gi|328882973|emb|CCA56212.1| Transcription-repair coupling factor [Streptomyces venezuelae ATCC
            10712]
          Length = 1221

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 136/488 (27%), Positives = 232/488 (47%), Gaps = 22/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 620  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFAPDTPWQRELEDAFPYAETPDQL 677

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 678  STIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 737

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V  ++        +  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 738  GTFSERYSQFPVKVRALSRFQTDTEAKATLEGMREGSVDVVIGTHRLFASETKFKDLGLV 797

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 798  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 857

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  +++            R   +     + I
Sbjct: 858  LTFVGPYEE-KQIGAAIRRELLREGQVFYIHNRVDSID-----RAAARLREIVPE--ARI 909

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 910  ATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 969

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 970  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 1029

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI-----LLYLY 688
            LG +QSG         +L+  ++  A  D +  +    +  +     I +     + + Y
Sbjct: 1030 LGGEQSGHI--AGVGFDLYVRMVGEAVADYRAQMDGGAEEEAPLEVKIELPVDAHMPHDY 1087

Query: 689  QYNEAFQF 696
               E  + 
Sbjct: 1088 APGERLRL 1095


>gi|89054813|ref|YP_510264.1| transcription-repair coupling factor [Jannaschia sp. CCS1]
 gi|88864362|gb|ABD55239.1| transcription-repair coupling factor [Jannaschia sp. CCS1]
          Length = 1153

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 139/446 (31%), Positives = 229/446 (51%), Gaps = 19/446 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +          L+A ++  +   ++ +K         G + +      P+  T  Q +
Sbjct: 554 WQAKKARLKERIRLIADKLIRIAAERELRKAPI--FEPPGDMWEAFNARFPYEETDDQLT 611

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI D+L DM+    M R++ GDVG GKT VA+ A   A  +G Q  ++AP  +LA+QH +
Sbjct: 612 AIADVLDDMTLGRPMDRLVVGDVGFGKTEVAMRAAFVAAASGMQVAVVAPTTLLARQHAK 671

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +   +   I V  ++  +      +  + ++ G   I+IGTHA+   S++   L L+I
Sbjct: 672 TFQDRFRGFPITVRQLSRFVGTKEAEQTRKGLSDGSVDIVIGTHAILAKSVRIQNLGLMI 731

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV  + +L +  +  HVL ++ATPIPRTL ++  G  D+S I   P  R  I+
Sbjct: 732 IDEEQRFGVTHKERLKEMRSDVHVLTLSATPIPRTLQMSLSGVRDLSMIGTPPVDRLAIR 791

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  + E L      G + +++ P+I++  E            L +H      
Sbjct: 792 TYVSEFDTV-TIREALLREHYRGGQTFYVVPRIQDLPEIE--------EFLKDHVPEVTY 842

Query: 520 I-IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           I  HG+M+  + +  M +F +G   +L+ATT++E GID+  A+ ++I  A+ FGLAQL+Q
Sbjct: 843 ITAHGQMAAGELDDRMVAFYDGKYDVLLATTIVESGIDIPTANTMVIHRADMFGLAQLYQ 902

Query: 579 LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
           +RGRVGR +  +   L   P   L+ ++  RL VL + +    GF IA +DL  R  G I
Sbjct: 903 IRGRVGRAKTRAYAYLTTKPRGKLTPSAEKRLRVLGSLDSLGAGFTIASQDLDIRGAGNI 962

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIA 659
           +G +QSG         EL+ S+LE A
Sbjct: 963 VGEEQSGH--VKEVGFELYQSMLEEA 986


>gi|260753800|ref|YP_003226693.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
            mobilis NCIMB 11163]
 gi|258553163|gb|ACV76109.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
            mobilis NCIMB 11163]
          Length = 1167

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 131/450 (29%), Positives = 229/450 (50%), Gaps = 17/450 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W +   +       +AGQ+     ++  ++        +       +   P+  T+ QE 
Sbjct: 568  WQARKSKMKERIRAIAGQLMATAAQRALRQAPVA--LADPASYPVFVDRFPYQETEDQEH 625

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI D+++D+++   M R++ GDVG GKT VAL A      +G Q  ++ P  +LA+QHY 
Sbjct: 626  AISDVIEDLAKGKPMDRLICGDVGFGKTEVALRAAFVTAMSGLQVALVCPTTLLARQHYS 685

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +  +   + +  ++  +P    +   E +A G   I+IGTHA+   +I + +L LVI
Sbjct: 686  NFLERFEGFPLQIGRLSRLVPAKEAKACREALADGTIDIVIGTHAILSKTIDFNRLGLVI 745

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+  FGV  + +L       H L +TATPIPRTL +   G  ++S I   P  R  ++
Sbjct: 746  VDEEQHFGVVHKERLKALKNDVHQLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLAVR 805

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            + ++P + +  + E L      G +++ + P+I +  +   + + E+   +         
Sbjct: 806  SYVMPWDPVA-IREALLREHYRGGQSFIVVPRISDLADLE-KFLSEQVPEI------RFV 857

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I HG+M+  + E+ M +F +    +L++TT++E G+D+  A+ +I+  A+ FGL+QL+Q+
Sbjct: 858  IAHGQMAATEVENRMSAFYDKKFDVLLSTTIVESGLDIPSANTMIVYRADRFGLSQLYQI 917

Query: 580  RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
            RGRVGR +  +   L    +  +S+ +  RL +L   +    GF +A  DL  R  G +L
Sbjct: 918  RGRVGRSKTRAYAYLTTPVNHSISETAEKRLHILSTLDSLGAGFQLASHDLDIRGAGNLL 977

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            G +QSG         EL+ S+LE A   AK
Sbjct: 978  GDEQSGHI--KEVGFELYQSMLEDAILVAK 1005


>gi|163841705|ref|YP_001626109.1| transcription-repair coupling factor [Renibacterium salmoninarum ATCC
            33209]
 gi|162955181|gb|ABY24696.1| transcription-repair coupling factor [Renibacterium salmoninarum ATCC
            33209]
          Length = 1278

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 133/483 (27%), Positives = 229/483 (47%), Gaps = 17/483 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W S   +     + +AG++  L          G   + +    +++    P+  T  Q 
Sbjct: 678  DWASTKNKARKAVKEIAGELIRLY--SARMASRGFSFSADTPWQRELEEAFPYVETPDQL 735

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM ++  M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LAQQHY
Sbjct: 736  TTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHY 795

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +      + V+ ++        ++  E +A+G   ++IGTH L      +  L LV
Sbjct: 796  ETFSERFSGFPVRVKPLSRFQSGKEAKETAEGVANGSIDVVIGTHRLLSKDFAFKDLGLV 855

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL ++  G  + S +   P  R P+
Sbjct: 856  IVDEEQRFGVEHKEQLKKMRNNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPV 915

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     +    ++  L    + +++  ++   +      +      L     + I
Sbjct: 916  LTYVGPYTD-KQASAAIRRELMREGQVFFVHNRVSSIE-----RIAAHVQQLVPE--ARI 967

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+MS+   E ++  F      +L+ TT+IE G+D+ +A+ +I++ A+ +GL+QLHQ
Sbjct: 968  AVAHGQMSESRLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDGADKYGLSQLHQ 1027

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY    PL + +  RL  +    +   G  +A +DL+ R  G +
Sbjct: 1028 LRGRVGRGRERAYAYFLYPAEKPLGEVALERLKAVAAHNELGAGMQLALKDLEIRGAGNL 1087

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +QSG         +L+  L+  A  D +           +       L + Y   E 
Sbjct: 1088 LGGEQSGHI--AGVGFDLYIRLVGEAVADYRGETEDKAADMKIELPVNAHLPHDYVPGER 1145

Query: 694  FQF 696
             + 
Sbjct: 1146 LRL 1148


>gi|218532420|ref|YP_002423236.1| transcription-repair coupling factor [Methylobacterium
            chloromethanicum CM4]
 gi|218524723|gb|ACK85308.1| transcription-repair coupling factor [Methylobacterium
            chloromethanicum CM4]
          Length = 1196

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 141/485 (29%), Positives = 232/485 (47%), Gaps = 27/485 (5%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKK 249
            +LL +        A           D       + R A  +    ++A  L++       
Sbjct: 573  ELLTRYGSEDSEVAL----------DRLGGGAWQARKAKMKRRILEMAGDLIKIAAARFV 622

Query: 250  EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
            +    +     + ++      F  T+ Q SAI  +L D++    M R++ GDVG GKT V
Sbjct: 623  KSAPSLKAPEGLYEEFAARFAFQETEDQASAIDAVLDDLNAGRPMDRLVCGDVGFGKTEV 682

Query: 310  ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            AL A  AA  +G Q  ++ P  +LA+QH+    +  +   I V  ++  +    +R+   
Sbjct: 683  ALRAAFAAAISGKQVAVVVPTTLLARQHFRTFAERFKGLPINVAQLSRFVSAGEQRQNRA 742

Query: 370  RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             +A G   I++GTHAL   ++ +  L L+IVDE+  FGV  + +L       HVL ++AT
Sbjct: 743  GLADGTVDIVVGTHALLAKNVAFKDLGLIIVDEEQHFGVAHKERLKALQADVHVLTLSAT 802

Query: 430  PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            PIPRTL L   G  ++S I   P  R  ++T + P + +  V E L      G +++++ 
Sbjct: 803  PIPRTLQLAMTGVRELSIIATPPMDRLAVRTFVTPFDPL-LVREALLRERYRGGQSFYVA 861

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            P+IE+  E       E          +++A+ HG+M+    E VM +F  G   +L++TT
Sbjct: 862  PRIEDLAEVKRFLDTEM-------PETTVAVAHGQMAAGQLEDVMTAFYEGKYDVLLSTT 914

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
            ++E G+D+  A+ +I+  A+ FGLA L+QLRGRVGR +  +  +        L+  +  R
Sbjct: 915  IVESGLDIPTANTLIVHRADMFGLAALYQLRGRVGRSKARAYALFTTPANRQLTTQAEQR 974

Query: 608  LSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            L VL++ +    GF +A  DL  R  G +LG  QSG         EL+  +LE A    K
Sbjct: 975  LKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDAQSGHI--KEVGYELYQQMLEDAVTALK 1032

Query: 665  HILTQ 669
              + +
Sbjct: 1033 AGIEE 1037


>gi|254388765|ref|ZP_05003997.1| transcriptional-repair coupling factor [Streptomyces clavuligerus
            ATCC 27064]
 gi|197702484|gb|EDY48296.1| transcriptional-repair coupling factor [Streptomyces clavuligerus
            ATCC 27064]
          Length = 1187

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 140/488 (28%), Positives = 231/488 (47%), Gaps = 22/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 586  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGPDTPWQRELEDAFPYAETPDQL 643

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQHY
Sbjct: 644  STIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHY 703

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V  ++        +  LE +  G   I+IGTH LF    ++  L LV
Sbjct: 704  GTFSERYGQFPVNVRALSRFQTDTEAKATLEGLKDGAVDIVIGTHRLFSSETKFKDLGLV 763

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 764  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 823

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 824  LTFVGPYEE-KQIGAAIRRELLREGQVFYIHNRVESID-----RAAARLREIVPE--ARI 875

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 876  ATAHGQMSESVLEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 935

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 936  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 995

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-----YLY 688
            LG +QSG         +L+  ++  A  D +  L    +        I + +     + Y
Sbjct: 996  LGGEQSGHI--AGVGFDLYVRMVGEAVADYRASLEGGAEEEPPLEVKIELPVDAHVPHDY 1053

Query: 689  QYNEAFQF 696
               E  + 
Sbjct: 1054 APGERLRL 1061


>gi|27379712|ref|NP_771241.1| transcription-repair coupling factor [Bradyrhizobium japonicum USDA
            110]
 gi|27352864|dbj|BAC49866.1| transcription-repair coupling factor [Bradyrhizobium japonicum USDA
            110]
          Length = 1172

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 141/451 (31%), Positives = 226/451 (50%), Gaps = 19/451 (4%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D    S  + R A  +    +IA  L++            + V+  +  +     P+  T
Sbjct: 565  DRLGGSGWQTRKAKLKNRIREIADELIKIAAARHLHEAPKLPVQPGLYDEFCARFPYDET 624

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + Q  AI+  L+D+     M R++ GDVG GKT VAL A  A    G Q  ++ P  +LA
Sbjct: 625  EDQLGAIESTLKDLELGRPMDRLICGDVGFGKTEVALRAAFAVALEGKQVAVVVPTTLLA 684

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH     +  +   + V   +  +P     +  + IA G   I++GTHAL   +I++  
Sbjct: 685  RQHARTFTERFKGFPVNVAQASRLIPTKELNQVKKGIADGSVDIVVGTHALLGKAIKFRD 744

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L LVIVDE+  FGV  + +L    +  HVL ++ATPIPRTL L   G  ++S I   P  
Sbjct: 745  LGLVIVDEEQHFGVTHKERLKALRSEVHVLTLSATPIPRTLQLALTGVRELSIIASPPVD 804

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T + P + +  + E L      G +A+++ P+I++  E                 
Sbjct: 805  RLAVRTFVAPHDPL-MIREALLRERYRGGQAFYVVPRIDDLAEVKDFLDKNVPEM----- 858

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               +A+ HG+M     E +M +F +G   +L++TT++E G+D+ +A+ +I+  A+ FGLA
Sbjct: 859  --KVAVAHGQMPPAVIEDIMTAFYDGKFDILLSTTIVESGLDIPNANTLIVHRADMFGLA 916

Query: 575  QLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
            QL+QLRGRVGR  ++ +  L   P    ++  +  RL VL++ E    GF +A  DL  R
Sbjct: 917  QLYQLRGRVGRS-KLRAYALFTLPAQQKITTQAERRLIVLQSLETLGAGFQLASHDLDIR 975

Query: 629  KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
              G +LG +QSG         EL+ S+LE A
Sbjct: 976  GAGNLLGEEQSGHI--KEVGFELYQSMLEEA 1004


>gi|311898036|dbj|BAJ30444.1| putative transcription-repair-coupling factor [Kitasatospora setae
            KM-6054]
          Length = 1202

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 136/490 (27%), Positives = 231/490 (47%), Gaps = 24/490 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W    +      + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 595  DWAKTKQRAKKAVKEIAADLIKLY--SARMAAPGHAFGPDTPWQRELEDAFPYAETPDQL 652

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 653  TTIGEVKADMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 712

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +   N  + V  ++        +  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 713  STFAERYANFPVNVRALSRFQTDTEAKAVLEGLFDGSVDVVIGTHRLFSSETRFKDLGLV 772

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 773  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 832

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   ++   ++  L    + ++I  ++E            R   L     + +
Sbjct: 833  LTFVGPYDE-KQISAAIRRELLREGQVFYIHNRVESID-----KAAARLKELVPE--ARV 884

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M +   E V+  F      +L++TT++E GID+ +A+ +I+E  + FGL+QLHQ
Sbjct: 885  ATAHGQMGETQLEKVVVDFWEKEFDVLVSTTIVESGIDISNANTLIVERGDTFGLSQLHQ 944

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E     +LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 945  LRGRVGRGRERGYAYMLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 1004

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-------Y 686
            LG +QSG         +L+  ++  A  + +  L             ++I L       +
Sbjct: 1005 LGGEQSGHI--AGVGFDLYMRMVGEAVAEFRESLEGGGGEPEEEPLEVKIELPVDAHVPH 1062

Query: 687  LYQYNEAFQF 696
             Y   E  + 
Sbjct: 1063 DYAPGERLRL 1072


>gi|326441399|ref|ZP_08216133.1| transcription-repair coupling factor [Streptomyces clavuligerus ATCC
            27064]
          Length = 1176

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 140/488 (28%), Positives = 231/488 (47%), Gaps = 22/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 575  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGPDTPWQRELEDAFPYAETPDQL 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQHY
Sbjct: 633  STIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHY 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V  ++        +  LE +  G   I+IGTH LF    ++  L LV
Sbjct: 693  GTFSERYGQFPVNVRALSRFQTDTEAKATLEGLKDGAVDIVIGTHRLFSSETKFKDLGLV 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 753  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 813  LTFVGPYEE-KQIGAAIRRELLREGQVFYIHNRVESID-----RAAARLREIVPE--ARI 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 865  ATAHGQMSESVLEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 924

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 925  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 984

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-----YLY 688
            LG +QSG         +L+  ++  A  D +  L    +        I + +     + Y
Sbjct: 985  LGGEQSGHI--AGVGFDLYVRMVGEAVADYRASLEGGAEEEPPLEVKIELPVDAHVPHDY 1042

Query: 689  QYNEAFQF 696
               E  + 
Sbjct: 1043 APGERLRL 1050


>gi|255349143|ref|ZP_05381150.1| transcription-repair coupling factor [Chlamydia trachomatis 70]
 gi|255503680|ref|ZP_05382070.1| transcription-repair coupling factor [Chlamydia trachomatis 70s]
 gi|255507360|ref|ZP_05382999.1| transcription-repair coupling factor [Chlamydia trachomatis
           D(s)2923]
 gi|289525792|emb|CBJ15273.1| transcription-repair coupling factor [Chlamydia trachomatis
           Sweden2]
 gi|296435368|gb|ADH17546.1| transcription-repair coupling factor [Chlamydia trachomatis E/150]
 gi|296439085|gb|ADH21238.1| transcription-repair coupling factor [Chlamydia trachomatis
           E/11023]
          Length = 1079

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 141/459 (30%), Positives = 219/459 (47%), Gaps = 16/459 (3%)

Query: 213 RKAKDFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
                       R R L+ + ++     L+ M  Q            G+   K   + P+
Sbjct: 496 PDLHHLNGAKWRRSRELSENSVILYAEKLIQMEAQRSTANSFIYPPHGEEVIKFAESFPY 555

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPI 330
             T  Q  AI  I  DM     M R++ GD G GKT + + A   AV  G  Q ++M P 
Sbjct: 556 EETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAVCDGHKQVIVMVPT 615

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH+E   +      I + +++        +K LE IA G+  I+IGTH +   +I
Sbjct: 616 TILANQHFETFSQRMAGLPITIGLLSRFSQGKTMKKTLEDIAQGRIDILIGTHKVINKAI 675

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +++   L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL L+  G  D+S IT 
Sbjct: 676 EFHNPGLLIIDEEQRFGVKAKDSLKERFPTIDCLTVSATPIPRTLYLSLSGARDLSLITM 735

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T ++  +  + +   ++  L  G + Y I  +IE         + E   +L
Sbjct: 736 PPLDRLPVSTFVMEHSE-ETLSAAIRHELLRGGQVYVIHNRIESIF-----RLGETIRTL 789

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + I + HG+M   +  S+   FK     +L+AT +IE GID+ +A+ I+I++A+ 
Sbjct: 790 IPE--ARIGVAHGQMHADELASIFYKFKTQKTNVLVATALIENGIDIPNANTILIDHADK 847

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL--KNTEDGFLIAEEDLK 626
           FG+A L+Q++GRVGR  + + C  L      LS  +  RL  L  +    G  IA  DL+
Sbjct: 848 FGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPTSKRLEALNKQEYGGGMKIALHDLE 907

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R  G ILG  QSG    +     L+  LL+ A    KH
Sbjct: 908 IRGAGNILGTDQSGHISAVGFN--LYCKLLKKAVAALKH 944


>gi|301335326|ref|ZP_07223570.1| transcription-repair coupling factor [Chlamydia trachomatis L2tet1]
 gi|301336312|ref|ZP_07224514.1| transcription-repair coupling factor [Chlamydia muridarum
           MopnTet14]
          Length = 1081

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 143/459 (31%), Positives = 218/459 (47%), Gaps = 16/459 (3%)

Query: 213 RKAKDFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
                       R R L+   ++     L+ M  Q            G+   K   + P+
Sbjct: 496 PDLHHLNGAKWRRSRELSEKSVILYAEKLIQMEAQRSTANSFIYPPHGEEVIKFAESFPY 555

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPI 330
             T  Q  AI  I  DM     M R++ GD G GKT + + A   AV  G  Q ++M P 
Sbjct: 556 EETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAVCDGQKQVIVMVPT 615

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH+E   +      I + +++        +K LE IA G+  I+IGTH +   +I
Sbjct: 616 TILANQHFETFSQRMAGLPITIGMLSRFSQGKAMKKTLEDIAQGKIDILIGTHKVINKAI 675

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           ++Y   L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL L+  G  D+S IT 
Sbjct: 676 EFYNPGLLIIDEEQRFGVKAKDALKERYPTIDCLTVSATPIPRTLYLSLSGARDLSLITM 735

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T ++  +  + +   ++  L  G + Y I  +IE         + E   +L
Sbjct: 736 PPLDRLPVSTFVMEHSE-ETLSAAIRHELLRGGQVYVIHNRIESIF-----RLGETIRTL 789

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + I I HG+M   +  S+   FK     +L+AT +IE GID+ +A+ I+I++A+ 
Sbjct: 790 IPE--ARIGIAHGQMHSEELASIFYKFKTQQTNVLVATALIENGIDIPNANTILIDHADK 847

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL--KNTEDGFLIAEEDLK 626
           FG+A L+Q++GRVGR  + + C  L      LS  +  RL  L  +    G  IA  DL+
Sbjct: 848 FGMADLYQMKGRVGRWNKKAYCYFLVSHLDRLSGPASKRLEALNKQEYGGGMKIALHDLE 907

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R  G ILG  QSG    +     L+  LL+ A    KH
Sbjct: 908 IRGAGNILGTDQSGHISAVGFN--LYCKLLKKAVAALKH 944


>gi|237738602|ref|ZP_04569083.1| transcription-repair coupling factor [Fusobacterium sp. 2_1_31]
 gi|229424085|gb|EEO39132.1| transcription-repair coupling factor [Fusobacterium sp. 2_1_31]
          Length = 979

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 145/462 (31%), Positives = 252/462 (54%), Gaps = 15/462 (3%)

Query: 222 SPARERLAYD-ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
              + RL+ D E+ A +I  +  ++          + +  + ++     PF+ T  Q  A
Sbjct: 405 KRKKARLSEDIEIFAKEIIKIQAKRNLANG--FKFSKDTVMQEEFEEAFPFTETPGQLKA 462

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I+D+ +DM     M R++ GDVG GKT VA+ A   A+    Q V++ P  +LA+QHYE 
Sbjct: 463 IEDVKRDMESGKVMDRLVCGDVGYGKTEVAIRAAFKAIMDEKQVVLLVPTTVLAEQHYER 522

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
             +  +N  I +EI++    +  + +++++I +G A +IIGTH L  D I+Y  + L+I+
Sbjct: 523 FSERFKNYPINIEILSRVQTKKEQEESIKKIENGSADLIIGTHRLLSDDIKYNDIGLLII 582

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+ +FGV+ + KL +      +L +TATPIPRTL L+ LG  D+S I   P GR+ I+T
Sbjct: 583 DEEQKFGVKAKEKLKKLKGDIDILTLTATPIPRTLNLSLLGIRDLSIIDTSPEGRQKIQT 642

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             I  N+ D + + +   +S   + ++I   ++  +        +    L   +   +  
Sbjct: 643 EYIDNNK-DLIRDIIITEVSREGQVFYIFNSVKRIE-----MKSKELRELLPEYI-KVDY 695

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG+M   D +  + +F+NG   +LIATT+IE GID+ +A+ +IIE  E  GL+Q++QLR
Sbjct: 696 IHGQMLARDIKRAIHNFENGNTDVLIATTIIENGIDIENANTMIIEGVEKLGLSQVYQLR 755

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED--GFLIAEEDLKQRKEGEILGIKQ 638
           GR+GR  + S C +L +   +KN+  R   ++  ++  G  ++ ED K R  GEILG KQ
Sbjct: 756 GRIGRSNKKSYCYMLMNENKTKNAQKREESIREFDNLTGIDLSMEDSKIRGVGEILGEKQ 815

Query: 639 SGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
            G  +   + +    L++ +L++  ++ + +   + +L   R
Sbjct: 816 HGAVETFGYNLYMKMLNEEILKLKGENEEELEDVNIELNFPR 857


>gi|119025222|ref|YP_909067.1| ATP-dependent DNA helicase [Bifidobacterium adolescentis ATCC
           15703]
 gi|118764806|dbj|BAF38985.1| ATP-dependent DNA helicase [Bifidobacterium adolescentis ATCC
           15703]
          Length = 893

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 193/627 (30%), Positives = 289/627 (46%), Gaps = 111/627 (17%)

Query: 172 KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
           ++   EAL+    +P+ + +    +      AEAF  IH+P+     +  + A   L Y+
Sbjct: 270 RQARTEALAA--AIPDIMPEAFRMEHGLMHRAEAFRAIHDPQNR---DGFNKALRTLRYE 324

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           E L  Q AL+  R   +K        + ++    + ++PFS T  Q+  I DI  DM++ 
Sbjct: 325 EALICQTALVQSRDSSRKATATAC-ADTRLKDDFVESLPFSLTDGQQQVIADISDDMARD 383

Query: 292 NRMLRILQGDVGSGK----------------TLVALIAMAAAVEAG-----GQAVIMAPI 330
             M R+LQG+VGSGK                  V +       E       G    M   
Sbjct: 384 YPMQRLLQGEVGSGKTVVAVAAMMQAVGSGKQAVLVAPTQVLAEQHYSSIRGMVDRMCGT 443

Query: 331 GILAQQHYEFIKKYTQNTQ----------------------------------------- 349
           G  A ++ +  +  T++T                                          
Sbjct: 444 GEEADENAKSGESQTKSTHRAVVDESGQVTSGNAPEPQNGGQSDGGQVEKLLDGQSNSLP 503

Query: 350 -IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
            I V ++TG M  A RR+ L + A G+  I++ THA F  + Q   L L ++DEQHRFGV
Sbjct: 504 DIPVLLLTGGMKLAARRRVLAQAASGKPCIVVATHAAFSKTFQAPNLALAVIDEQHRFGV 563

Query: 409 QQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           +QR  L  K  TAPH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T ++P   
Sbjct: 564 EQRESLNAKGSTAPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTFVVPEAN 623

Query: 468 ---IDEVIERLKVVLSEGKKAYWICPQI-----------------------------EEK 495
              + E+   ++  +  G++AY +CP+I                             E+ 
Sbjct: 624 GPLMAEMFGLIRKRIDAGERAYVVCPRIDADAKDADDAGGSGDAEVGSAFDATYDLGEDD 683

Query: 496 KESNFR-------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           ++   R        + ER  SL +     IA + GR  D  K  +M  F+ G   +L+AT
Sbjct: 684 EQREQRPPLHSVAEIAERLRSLPQFAGIRIATLTGRDDDETKSQIMADFEAGVTPILVAT 743

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           TVIEVG+DV  AS ++I +A+ +GL+QLHQLRGRVGRG   S   L+   P   ++  RL
Sbjct: 744 TVIEVGVDVAQASCMVIFDADRYGLSQLHQLRGRVGRGGTESGAFLISRAPEGSDAAKRL 803

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHIL 667
            V+  T DG  IA+ DL+ R  G++LG  QSG      + +      ++E AR +A  ++
Sbjct: 804 DVIAGTLDGAEIAQADLEFRGAGDVLGDAQSGGKSGLKLLRVVKDVKIIEEARAEAAKLV 863

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAF 694
            +DP L     Q    +L   + NE F
Sbjct: 864 AEDPTLQGYV-QLAGAVLDFTRGNETF 889



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 75/588 (12%), Positives = 162/588 (27%), Gaps = 85/588 (14%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P    +      + E      +    ++     F +  R
Sbjct: 23  RRVGALKSLGVVSVGDALTYYPFRVTEPVPARALREAKIGENMAFAAHVRGVRVFPM-AR 81

Query: 88  RPYKILLNDGTGEI-----------TLLFFYRKT---EMLKNVFFEGRKITVTGKIKKLK 133
           R ++++ +   G+            +L+FF  +    + ++    EG  + V G+     
Sbjct: 82  RGFRLIADVDDGDFARSRHMDASMASLVFFSYRKSYVDWIQRKLHEGALLVVAGEPSVYN 141

Query: 134 NRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL 193
           +R+   HP  +  +                  L          EA              +
Sbjct: 142 DRLQFTHPDILTVD-------------PAGEQLRSRSS----EEAAEWDDGFGTEQPAVV 184

Query: 194 LQ-------KKSFPSIAEAFNIIHNPRKAKD----------FEWTSPARERLAYDELLAG 236
            Q       K    S+ EA   +  PR               E      +RL  DE  A 
Sbjct: 185 PQSSTMPNLKYDAASVPEAMRHVCRPRPVYHANSRISSEHIHESIEKCMDRLCGDEYAAA 244

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL-------QDMS 289
           Q A  L             +      Q     +         +AI DI+         + 
Sbjct: 245 QAARALHGADASDAQHGEFDAPQADRQARTEAL--------AAAIPDIMPEAFRMEHGLM 296

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
            +    R +           AL  +        Q   +      +++        T+   
Sbjct: 297 HRAEAFRAIHDPQNRDGFNKALRTLRYEEALICQTA-LVQSRDSSRKATATACADTRLKD 355

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
             VE +  ++    + + +  I+   A        L Q  +   K ++ +       G  
Sbjct: 356 DFVESLPFSLTDGQQ-QVIADISDDMARD-YPMQRLLQGEVGSGKTVVAVAAMMQAVGSG 413

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           ++  L            ++    R +V    G  + +    K    +   T    ++   
Sbjct: 414 KQAVLVAPTQVLAEQHYSS---IRGMVDRMCGTGEEADENAKSGESQTKSTHRAVVDESG 470

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528
           +V          G ++             +   V +  +          + ++ G M   
Sbjct: 471 QVTSGNAPEPQNGGQS-------------DGGQVEKLLDGQSNSLPDIPVLLLTGGMKLA 517

Query: 529 DKESVMDSFKNGTCKLLIATT-VIEVGIDVVDASIIIIENAEHFGLAQ 575
            +  V+    +G   +++AT           + ++ +I+    FG+ Q
Sbjct: 518 ARRRVLAQAASGKPCIVVATHAAFSKTFQAPNLALAVIDEQHRFGVEQ 565


>gi|239981759|ref|ZP_04704283.1| transcriptional-repair coupling factor [Streptomyces albus J1074]
 gi|291453617|ref|ZP_06593007.1| transcriptional-repair coupling factor [Streptomyces albus J1074]
 gi|291356566|gb|EFE83468.1| transcriptional-repair coupling factor [Streptomyces albus J1074]
          Length = 1177

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 142/490 (28%), Positives = 233/490 (47%), Gaps = 26/490 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P+  T  Q 
Sbjct: 576  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGQDTPWQRELEDAFPYMETPDQL 633

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 634  STIAEVKDDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 693

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V  ++     A  +  LE +  G   I+IGTH LF    ++  L LV
Sbjct: 694  GTFSERYAQFPVNVRALSRFQSDAEAKATLEGLRDGSVDIVIGTHRLFSSETKFKDLGLV 753

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 754  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 813

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 814  LTFVGPYD-PKQIGAAIRRELLREGQVFYIHNRVESID-----KAAARLREIVPE--ARI 865

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 866  ATAHGKMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 925

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 926  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 985

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-------Y 686
            LG +QSG         +L+  ++  A  D +  L  D  +       ++I L       +
Sbjct: 986  LGGEQSGHI--AGVGFDLYVRMVGEAVADYRAAL--DGGVEEEPAPEVKIELPVDAHVPH 1041

Query: 687  LYQYNEAFQF 696
             Y   E  + 
Sbjct: 1042 DYAPGERLRL 1051


>gi|302551963|ref|ZP_07304305.1| transcription-repair coupling factor [Streptomyces viridochromogenes
            DSM 40736]
 gi|302469581|gb|EFL32674.1| transcription-repair coupling factor [Streptomyces viridochromogenes
            DSM 40736]
          Length = 1177

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 139/490 (28%), Positives = 233/490 (47%), Gaps = 25/490 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 575  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGADTPWQRELEDAFPYAETPDQL 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 633  TTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V  ++        +  LE +  G   I+IGTH LF    ++  L LV
Sbjct: 693  GTFSERYAQFPVNVRALSRFQTDTEAKAVLEGLREGSVDIVIGTHRLFSSETKFKDLGLV 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 753  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 813  LTFVGPYEE-KQIGAAIRRELLREGQVFYIHNRVESID-----RAAARLREIVPE--ARI 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 865  ATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 924

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 925  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 984

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-------Y 686
            LG +QSG         +L+  ++  A  D +  L    ++       ++I L       +
Sbjct: 985  LGGEQSGHI--AGVGFDLYVRMVGEAVADYRRQLET-GEIEEEPPLEVKIELPVDAHVPH 1041

Query: 687  LYQYNEAFQF 696
             Y   E  + 
Sbjct: 1042 DYAPGERLRL 1051


>gi|240140979|ref|YP_002965459.1| transcription repair coupling protein, ATP-dependent helicase
            [Methylobacterium extorquens AM1]
 gi|240010956|gb|ACS42182.1| transcription repair coupling protein, ATP-dependent helicase
            [Methylobacterium extorquens AM1]
          Length = 1196

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 140/485 (28%), Positives = 232/485 (47%), Gaps = 27/485 (5%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKK 249
            +LL +        A           D       + R A  +    ++A  L++       
Sbjct: 573  ELLTRYGSEDSEVAL----------DRLGGGAWQARKAKMKRRILEMAGDLIKIAAARFV 622

Query: 250  EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
            +    +     + ++      F  T+ Q +AI  +L D++    M R++ GDVG GKT V
Sbjct: 623  KSAPSLKAPEGLYEEFAARFAFQETEDQANAIDAVLDDLNAGRPMDRLVCGDVGFGKTEV 682

Query: 310  ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            AL A  AA  +G Q  ++ P  +LA+QH+    +  +   I V  ++  +    +R+   
Sbjct: 683  ALRAAFAAAISGKQVAVVVPTTLLARQHFRTFAERFKGLPINVAQLSRFVSAGEQRQNRA 742

Query: 370  RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             +A G   I++GTHAL   ++ +  L L+IVDE+  FGV  + +L       HVL ++AT
Sbjct: 743  GLADGTVDIVVGTHALLAKNVAFKDLGLIIVDEEQHFGVAHKERLKALQADVHVLTLSAT 802

Query: 430  PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            PIPRTL L   G  ++S I   P  R  ++T + P + +  V E L      G +++++ 
Sbjct: 803  PIPRTLQLAMTGVRELSIIATPPMDRLAVRTFVTPFDPL-LVREALLRERYRGGQSFYVA 861

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            P+IE+  E       E          +++A+ HG+M+    E VM +F  G   +L++TT
Sbjct: 862  PRIEDLAEVKRFLDTEM-------PETTVAVAHGQMAAGQLEDVMTAFYEGKYDVLLSTT 914

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
            ++E G+D+  A+ +I+  A+ FGLA L+QLRGRVGR +  +  +        L+  +  R
Sbjct: 915  IVESGLDIPTANTLIVHRADMFGLAALYQLRGRVGRSKARAYALFTTPANRQLTTQAEQR 974

Query: 608  LSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            L VL++ +    GF +A  DL  R  G +LG  QSG         EL+  +LE A    K
Sbjct: 975  LKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDAQSGHI--KEVGYELYQQMLEDAVTALK 1032

Query: 665  HILTQ 669
              + +
Sbjct: 1033 AGIEE 1037


>gi|330873209|gb|EGH07358.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 344

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 157/345 (45%), Positives = 221/345 (64%), Gaps = 8/345 (2%)

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             + G +    R  +LE+IA G   +++GTHALFQD +Q+  L LVI+DEQHRFGVQQRL
Sbjct: 2   AWLAGKLKGKARATSLEQIASGTP-MVVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRL 60

Query: 413 KLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            L +K       PH L+MTATPIPRTL +++  D+D S + E P GR P+ TV++  +R 
Sbjct: 61  ALRKKGVGGLMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRR 120

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSD 527
            EV+ER++   +EG++AYW+C  IEE +E   ++    +  L        + +IHGRM  
Sbjct: 121 LEVVERVRAACAEGRQAYWVCTLIEESEELTCKAAETTYEELSSALGEVRVGLIHGRMKP 180

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K ++M  FK G  +LL+ATTVIEVG+DV ++S++IIEN E  GLAQLHQLRGRVGRG 
Sbjct: 181 AEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGS 240

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
            +S C+LLYHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A
Sbjct: 241 AVSHCVLLYHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVA 300

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
                  LL   R  A+ +L + P   S      R L +  QY +
Sbjct: 301 DLMRDADLLPAVRDAAQALLERWPQHVSPL--LDRWLRHGQQYGQ 343


>gi|145593442|ref|YP_001157739.1| transcription-repair coupling factor [Salinispora tropica CNB-440]
 gi|145302779|gb|ABP53361.1| transcription-repair coupling factor [Salinispora tropica CNB-440]
          Length = 1216

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 137/461 (29%), Positives = 227/461 (49%), Gaps = 18/461 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A Q+  L      K   G     +    +++    P+  T  Q 
Sbjct: 604  DWQKSKARARKAVREIAAQLIQLYA--ARKASKGHSFGPDTPWQRELEDAFPWQETPDQL 661

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+++ +DM Q   M R++ GDVG GKT +A+ A   A++ G Q  ++ P  +L QQHY
Sbjct: 662  AAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAIQDGRQVAVLVPTTLLVQQHY 721

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +        +  ++         + LE  A G A I+IGTH L Q S ++  L LV
Sbjct: 722  NTFAERMSQFPATIRQLSRFQTPKEAEQTLEMAAAGTADIVIGTHRLLQASARFRSLGLV 781

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L     +  VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 782  IVDEEQRFGVEHKEHLKSVRASVDVLSMSATPIPRTLEMAITGIREMSTIATPPEERHPV 841

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   +   L    + +++  ++E  +         R   L     + +
Sbjct: 842  LTAVGAYDER-QVAAAIHRELLRDGQVFYLHNRVESIE-----RAARRLRELVPE--ARV 893

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG++ +   E VM  F      +LI TT++E GID+ +A+ +I+E A+  GLAQLHQ
Sbjct: 894  AVAHGQLGEEALERVMVGFWEKEFDVLICTTIVESGIDIPNANTLIVERADLLGLAQLHQ 953

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            +RGRVGRG E +    LY    PL+++++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 954  IRGRVGRGRERAYAYFLYPSDKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGAGNL 1013

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK-HILTQDPDL 673
            LG +QSG  +      +L+  ++  A +  K     ++P++
Sbjct: 1014 LGGEQSGHIE--GVGFDLYVRMVGEAVQAFKGERPEEEPEI 1052


>gi|254563490|ref|YP_003070585.1| transcription repair coupling protein, ATP-dependent helicase
            [Methylobacterium extorquens DM4]
 gi|254270768|emb|CAX26773.1| transcription repair coupling protein, ATP-dependent helicase
            [Methylobacterium extorquens DM4]
          Length = 1196

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 140/485 (28%), Positives = 232/485 (47%), Gaps = 27/485 (5%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKK 249
            +LL +        A           D       + R A  +    ++A  L++       
Sbjct: 573  ELLTRYGSEDSEVAL----------DRLGGGAWQARKAKMKRRILEMAGDLIKIAAARFV 622

Query: 250  EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
            +    +     + ++      F  T+ Q +AI  +L D++    M R++ GDVG GKT V
Sbjct: 623  KSAPSLKAPEGLYEEFAARFAFQETEDQANAIDAVLDDLNAGRPMDRLVCGDVGFGKTEV 682

Query: 310  ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            AL A  AA  +G Q  ++ P  +LA+QH+    +  +   I V  ++  +    +R+   
Sbjct: 683  ALRAAFAAAISGKQVAVVVPTTLLARQHFRTFAERFKGLPINVAQLSRFVSAGEQRQNRA 742

Query: 370  RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             +A G   I++GTHAL   ++ +  L L+IVDE+  FGV  + +L       HVL ++AT
Sbjct: 743  GLADGTVDIVVGTHALLAKNVAFKDLGLIIVDEEQHFGVAHKERLKALQADVHVLTLSAT 802

Query: 430  PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            PIPRTL L   G  ++S I   P  R  ++T + P + +  V E L      G +++++ 
Sbjct: 803  PIPRTLQLAMTGVRELSIIATPPMDRLAVRTFVTPFDPL-LVREALLRERYRGGQSFYVA 861

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            P+IE+  E       E          +++A+ HG+M+    E VM +F  G   +L++TT
Sbjct: 862  PRIEDLAEVKRFLDTEM-------PETTVAVAHGQMAAGQLEDVMTAFYEGKYDVLLSTT 914

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
            ++E G+D+  A+ +I+  A+ FGLA L+QLRGRVGR +  +  +        L+  +  R
Sbjct: 915  IVESGLDIPTANTLIVHRADMFGLAALYQLRGRVGRSKARAYALFTTPANRQLTTQAEQR 974

Query: 608  LSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            L VL++ +    GF +A  DL  R  G +LG  QSG         EL+  +LE A    K
Sbjct: 975  LKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDAQSGHI--KEVGYELYQQMLEDAVTALK 1032

Query: 665  HILTQ 669
              + +
Sbjct: 1033 AGIEE 1037


>gi|159036485|ref|YP_001535738.1| transcription-repair coupling factor [Salinispora arenicola CNS-205]
 gi|157915320|gb|ABV96747.1| transcription-repair coupling factor [Salinispora arenicola CNS-205]
          Length = 1218

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 135/451 (29%), Positives = 222/451 (49%), Gaps = 17/451 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +A Q+  L      K   G P   +    +++    P+  T  Q 
Sbjct: 606  DWQKSKARARKAVREIAAQLIQLYA--ARKASKGHPFGPDTPWQRELEDAFPWQETPDQL 663

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI+++ +DM Q   M R++ GDVG GKT +A+ A   A++ G Q  ++ P  +L QQHY
Sbjct: 664  AAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAIQDGRQVAVLVPTTLLVQQHY 723

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +        +  ++         + L   A G A I+IGTH L Q S ++  L LV
Sbjct: 724  NTFAERMSQFPATIRQLSRFQTSKEAEQTLTMAADGTADIVIGTHRLLQASARFKSLGLV 783

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  L     +  VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 784  IVDEEQRFGVEHKEHLKSVRASVDVLSMSATPIPRTLEMAITGIREMSTIATPPEERHPV 843

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   +   L    + +++  ++E  +         R   L     + +
Sbjct: 844  LTAVGAYDER-QVAAAIHRELLRDGQVFYLHNRVESIE-----RAARRLRELVPE--ARV 895

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG++ +   E VM  F      +L+ TT++E GID+ +A+ +I+E A+  GLAQLHQ
Sbjct: 896  AVAHGQLGEEALERVMVGFWEKQFDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQ 955

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            +RGRVGRG E +    LY    PL+++++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 956  IRGRVGRGRERAYAYFLYPSDKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGAGNL 1015

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            LG +QSG  +      +L+  ++  A +  K
Sbjct: 1016 LGGEQSGHIE--GVGFDLYVRMVGEAVQAFK 1044


>gi|294629781|ref|ZP_06708341.1| transcription-repair coupling factor [Streptomyces sp. e14]
 gi|292833114|gb|EFF91463.1| transcription-repair coupling factor [Streptomyces sp. e14]
          Length = 1184

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 136/487 (27%), Positives = 234/487 (48%), Gaps = 19/487 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 582  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGADTPWQRELEDAFPYAETPDQL 639

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 640  TTIAEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 699

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V  ++        +  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 700  GTFSERYAQFPVNVRALSRFQTDTEAKAVLEGLREGSVDVVIGTHRLFSSETKFKDLGLV 759

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 760  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 819

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 820  LTFVGPYEE-KQIGAAVRRELLREGQVFYIHNRVESID-----RAAARLREIVPE--ARI 871

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 872  ATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 931

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 932  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 991

Query: 634  LGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLT-SVRGQSIRILLYLYQ 689
            LG +QSG      F +    + +++ +  R+     + ++P L   +       + + Y 
Sbjct: 992  LGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLESGGVEEEPPLEVKIELPVDAHVPHDYA 1051

Query: 690  YNEAFQF 696
              E  + 
Sbjct: 1052 PGERLRL 1058


>gi|148557853|ref|YP_001257567.1| transcription-repair coupling factor [Brucella ovis ATCC 25840]
 gi|148369138|gb|ABQ62010.1| transcription-repair coupling factor [Brucella ovis ATCC 25840]
          Length = 1132

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 134/452 (29%), Positives = 228/452 (50%), Gaps = 21/452 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + R A  +    +IA  L++   + +      +     +  +     P   T
Sbjct: 530 DKLGGGAWQARKAKLKKRLLEIAGHLIQIAAERQMRGAPVMTPPDGLYAEFAARFPDDET 589

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q +AI+ +  D++Q   M R++ GDVG GKT VAL A   A  +G Q  ++ P  +L+
Sbjct: 590 DDQLTAIEAVADDLAQGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLS 649

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH++          I V   +  +         + +  G   I++GTHAL   SI++  
Sbjct: 650 RQHFKTFSNRFHGLPINVAHASRLVGAKELAATKKGLEEGTVDIVVGTHALLGSSIKFKN 709

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 710 LGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVD 769

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  ++T + P + +  + E L      G +++++ P+I +  +            L EH 
Sbjct: 770 RMAVRTFVSPFDPL-VIRETLLRERYRGGQSFYVVPRIADLTDIE--------EFLKEHV 820

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +A+ HG+M+    + +M++F +G   +L++TT++E G+D+  A+ +I+  A+ FGL
Sbjct: 821 PELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGL 880

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQ 627
           AQL+QLRGRVGR  +  +  L   P    L++ +  RL VL++ +    GF +A  D+  
Sbjct: 881 AQLYQLRGRVGRS-KQRAFALFTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDI 939

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           R  G +LG +QSG         EL+  +LE A
Sbjct: 940 RGAGNLLGEEQSGHI--KEVGFELYQQMLEEA 969


>gi|15605481|ref|NP_220267.1| transcription-repair coupling factor [Chlamydia trachomatis
           D/UW-3/CX]
 gi|3329208|gb|AAC68343.1| Transcription-Repair Coupling [Chlamydia trachomatis D/UW-3/CX]
 gi|296437224|gb|ADH19394.1| transcription-repair coupling factor [Chlamydia trachomatis
           G/11222]
 gi|297748878|gb|ADI51424.1| Transcription-repair coupling factor [Chlamydia trachomatis D-EC]
 gi|297749758|gb|ADI52436.1| Transcription-repair coupling factor [Chlamydia trachomatis D-LC]
          Length = 1079

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 141/459 (30%), Positives = 218/459 (47%), Gaps = 16/459 (3%)

Query: 213 RKAKDFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
                       R R L+   ++     L+ M  Q            G+   K   + P+
Sbjct: 496 PDLHHLNGAKWRRSRELSEKSVILYAEKLIQMEAQRSTANSFIYPPHGEEVIKFAESFPY 555

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPI 330
             T  Q  AI  I  DM     M R++ GD G GKT + + A   AV  G  Q ++M P 
Sbjct: 556 EETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAVCDGHKQVIVMVPT 615

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH+E   +      I + +++        +K LE IA G+  I+IGTH +   +I
Sbjct: 616 TILANQHFETFSQRMAGLPITIGLLSRFSQGKTMKKTLEDIAQGRIDILIGTHKVINKAI 675

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +++   L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL L+  G  D+S IT 
Sbjct: 676 EFHNPGLLIIDEEQRFGVKAKDSLKERFPTIDCLTVSATPIPRTLYLSLSGARDLSLITM 735

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T ++  +  + +   ++  L  G + Y I  +IE         + E   +L
Sbjct: 736 PPLDRLPVSTFVMEHSE-ETLSAAIRHELLRGGQVYVIHNRIESIF-----RLGETIRTL 789

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + I + HG+M   +  S+   FK     +L+AT +IE GID+ +A+ I+I++A+ 
Sbjct: 790 IPE--ARIGVAHGQMHANELASIFYKFKTQQTNVLVATALIENGIDIPNANTILIDHADK 847

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL--KNTEDGFLIAEEDLK 626
           FG+A L+Q++GRVGR  + + C  L      LS  +  RL  L  +    G  IA  DL+
Sbjct: 848 FGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPTSKRLEALNKQEYGGGMKIALHDLE 907

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R  G ILG  QSG    +     L+  LL+ A    KH
Sbjct: 908 IRGAGNILGTDQSGHISAVGFN--LYCKLLKKAVAALKH 944


>gi|34581455|ref|ZP_00142935.1| transcription-repair coupling factor [Rickettsia sibirica 246]
 gi|28262840|gb|EAA26344.1| transcription-repair coupling factor [Rickettsia sibirica 246]
          Length = 1122

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 136/466 (29%), Positives = 239/466 (51%), Gaps = 26/466 (5%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
           +  ++R+    L   QIA      + K      +  + +   K   N PFS T+ Q  AI
Sbjct: 533 AKLKKRIKEIALHLIQIA-----AKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAI 587

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIMAPIGILAQQH 337
            DI +D+     M R++ GDVG GKT VA+ A+        E   Q  ++ P  IL  QH
Sbjct: 588 NDIKEDLRNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQH 647

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           +    +  +   + ++ ++  +     +     +  G+ +IIIGTH+L   +I+++ L L
Sbjct: 648 FSRFIERFKGFGLNIKQLSSVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKL 707

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+  FGV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  
Sbjct: 708 LIIDEEQHFGVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLE 767

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + T ++P + +  + + L      G +++++ P+I++ ++   +        +    +  
Sbjct: 768 VHTSVMPCDPV-IIRDALLREHFRGGRSFYVVPRIKDIEDIAKQ-----LKQIVPELSYK 821

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  +G+M+    + VM+ F  G   +L++TT+IE GID+ +A+ +II NA+  GL+QL+
Sbjct: 822 IA--YGKMTPSKIDEVMNEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLY 879

Query: 578 QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGE 632
           QLRGR+GRG+      L    H  ++ +S  RL +++N+     GF IA  D+  R  G 
Sbjct: 880 QLRGRIGRGKMRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASRDMDLRGFGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH--ILTQDPDLTSV 676
           ++G +QSG         EL+  +LE      K   I+++ P + ++
Sbjct: 940 LIGEEQSGQI--KEVGTELYQEMLEEQIAIFKDEPIVSEQPFIPTI 983


>gi|76789489|ref|YP_328575.1| transcription-repair coupling factor [Chlamydia trachomatis
           A/HAR-13]
 gi|237805099|ref|YP_002889253.1| transcription-repair coupling factor [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311580|ref|ZP_05354150.1| transcription-repair coupling factor [Chlamydia trachomatis 6276]
 gi|255317881|ref|ZP_05359127.1| transcription-repair coupling factor [Chlamydia trachomatis 6276s]
 gi|76168019|gb|AAX51027.1| transcription-repair coupling factor [Chlamydia trachomatis
           A/HAR-13]
 gi|231273399|emb|CAX10314.1| transcription-repair coupling factor [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 1079

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 141/459 (30%), Positives = 218/459 (47%), Gaps = 16/459 (3%)

Query: 213 RKAKDFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
                       R R L+   ++     L+ M  Q            G+   K   + P+
Sbjct: 496 PDLHHLNGAKWRRSRELSEKSVILYAEKLIQMEAQRSTANSFIYPPHGEEVIKFAESFPY 555

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPI 330
             T  Q  AI  I  DM     M R++ GD G GKT + + A   AV  G  Q ++M P 
Sbjct: 556 EETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAVCDGHKQVIVMVPT 615

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH+E   +      I + +++        +K LE IA G+  I+IGTH +   +I
Sbjct: 616 TILANQHFETFSQRMAGLPITIGLLSRFSQGKTMKKTLEDIAQGRIDILIGTHKVINKAI 675

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +++   L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL L+  G  D+S IT 
Sbjct: 676 EFHNPGLLIIDEEQRFGVKAKDSLKERFPTIDCLTVSATPIPRTLYLSLSGARDLSLITM 735

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T ++  +  + +   ++  L  G + Y I  +IE         + E   +L
Sbjct: 736 PPLDRLPVSTFVMEHSE-ETLSAAIRHELLRGGQVYVIHNRIESIF-----RLGETIRTL 789

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + I + HG+M   +  S+   FK     +L+AT +IE GID+ +A+ I+I++A+ 
Sbjct: 790 IPE--ARIGVAHGQMHANELASIFYKFKTQQTNVLVATALIENGIDIPNANTILIDHADK 847

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL--KNTEDGFLIAEEDLK 626
           FG+A L+Q++GRVGR  + + C  L      LS  +  RL  L  +    G  IA  DL+
Sbjct: 848 FGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPTSKRLEALNKQEYGGGMKIALHDLE 907

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R  G ILG  QSG    +     L+  LL+ A    KH
Sbjct: 908 IRGAGNILGTDQSGHISAVGFN--LYCKLLKKAVAALKH 944


>gi|166154965|ref|YP_001653220.1| transcription-repair coupling factor [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|165930953|emb|CAP06515.1| transcription-repair coupling factor [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 1079

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 142/459 (30%), Positives = 219/459 (47%), Gaps = 16/459 (3%)

Query: 213 RKAKDFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
                       R R L+ + ++     L+ M  Q            G+   K   + P+
Sbjct: 496 PDLHHLNGAKWRRSRELSENSVILYAEKLIQMEAQRSTANSFIYPPHGEEVIKFAESFPY 555

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPI 330
             T  Q  AI  I  DM     M R++ GD G GKT + + A   AV  G  Q ++M P 
Sbjct: 556 EETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAVCDGHKQVIVMVPT 615

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH+E   +      I + +++        +K LE IA G+  I+IGTH +   +I
Sbjct: 616 TILANQHFETFSQRMAGLPITIGLLSRFSQGKTMKKTLEDIAQGRIDILIGTHKVINKAI 675

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +++   L+IVDE+ RFGV+ +  L ++      L ++ATPIPRTL L+  G  D+S IT 
Sbjct: 676 EFHNPGLLIVDEEQRFGVKAKDSLKERFPTIDCLTVSATPIPRTLYLSLSGARDLSLITM 735

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T ++  +  + +   ++  L  G + Y I  +IE         + E   +L
Sbjct: 736 PPLDRLPVSTFVMEHSE-ETLSAAIRHELLRGGQVYVIHNRIESIF-----RLGETIRTL 789

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + I + HG+M   +  S+   FK     +L+AT +IE GID+ +A+ I+I++A+ 
Sbjct: 790 IPE--ARIGVAHGQMHADELASIFYKFKTQQTNVLVATALIENGIDIPNANTILIDHADK 847

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL--KNTEDGFLIAEEDLK 626
           FG+A L+Q++GRVGR  + + C  L      LS  +  RL  L  +    G  IA  DL+
Sbjct: 848 FGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPTSKRLEALNKQEYGGGMKIALHDLE 907

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R  G ILG  QSG    +     L+  LL+ A    KH
Sbjct: 908 IRGAGNILGTDQSGHISAVGFN--LYCKLLKKAVAALKH 944


>gi|15834748|ref|NP_296507.1| transcription-repair coupling factor [Chlamydia muridarum Nigg]
 gi|270284915|ref|ZP_06194309.1| transcription-repair coupling factor [Chlamydia muridarum Nigg]
 gi|270288942|ref|ZP_06195244.1| transcription-repair coupling factor [Chlamydia muridarum Weiss]
 gi|7190159|gb|AAF39002.1| transcription-repair coupling factor [Chlamydia muridarum Nigg]
          Length = 1080

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 140/459 (30%), Positives = 217/459 (47%), Gaps = 16/459 (3%)

Query: 213 RKAKDFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
                       R R L+   ++     L+ M  Q            G+   K   + P+
Sbjct: 496 PDLHHLNGAKWRRSRELSEKSVILYAEKLIQMEAQRSTANSFIYPTHGEEVIKFAESFPY 555

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPI 330
             T  Q  AI  I  DM     M R++ GD G GKT + + A   AV  G  Q ++M P 
Sbjct: 556 EETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAVCDGQKQVIVMVPT 615

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH+E   +      I + +++        +K LE +A G+  I+IGTH +   SI
Sbjct: 616 TILANQHFETFSQRMAGLPITIGLLSRFSQGKAMKKTLEDVAQGRIDILIGTHKVINKSI 675

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +++   L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL L+  G  D+S IT 
Sbjct: 676 EFHNPGLLIIDEEQRFGVKAKDALKERYPTIDCLTVSATPIPRTLYLSLSGARDLSLITM 735

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T ++     + +   ++  L  G + Y I  +IE         + E   +L
Sbjct: 736 PPLDRLPVSTFVMEHTE-ETLSAAIRHELLRGGQVYVIHNRIE-----GIFRLGETIRTL 789

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + I + HG+M   +  ++   FK     +L+AT +IE GID+ +A+ I+I++A+ 
Sbjct: 790 IPE--ARIGVAHGQMHSDELANIFYKFKTQQTNVLVATALIENGIDIPNANTILIDHADK 847

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL--KNTEDGFLIAEEDLK 626
           FG+A L+Q++GRVGR  + + C  L      LS  +  RL  L  +    G  IA  DL+
Sbjct: 848 FGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPASKRLEALNKQEYGGGMKIALHDLE 907

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R  G ILG  QSG    +     L+  LL+ A    KH
Sbjct: 908 IRGAGNILGTDQSGHISAVGFN--LYCKLLKKAVAALKH 944


>gi|302560241|ref|ZP_07312583.1| transcription-repair coupling factor [Streptomyces griseoflavus
            Tu4000]
 gi|302477859|gb|EFL40952.1| transcription-repair coupling factor [Streptomyces griseoflavus
            Tu4000]
          Length = 1187

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 136/487 (27%), Positives = 237/487 (48%), Gaps = 19/487 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 585  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGADSPWQRELEDAFPYAETPDQL 642

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 643  TTIAEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 702

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      ++V+ ++        +  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 703  GTFSERYAQFPVVVKALSRFQSDTEAKAVLEGLREGSVDVVIGTHRLFSSETKFKDLGLV 762

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 763  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 822

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P  +  ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 823  LTFVGPYEQ-KQIGAAIRRELLREGQVFYIHNRVESID-----RAAARLREIVPE--ARI 874

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 875  ATAHGQMSESALEQVVVDFWEKKSDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 934

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 935  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 994

Query: 634  LGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLT-SVRGQSIRILLYLYQ 689
            LG +QSG      F +    + +++ +  R+     + ++P L   +       + + Y 
Sbjct: 995  LGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGGIEEEPPLEVKIELPVDAHVPHDYA 1054

Query: 690  YNEAFQF 696
              E  + 
Sbjct: 1055 PGERLRL 1061


>gi|271969774|ref|YP_003343970.1| transcription-repair coupling factor [Streptosporangium roseum DSM
            43021]
 gi|270512949|gb|ACZ91227.1| transcription-repair coupling factor [Streptosporangium roseum DSM
            43021]
          Length = 1204

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 124/427 (29%), Positives = 216/427 (50%), Gaps = 15/427 (3%)

Query: 241  LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            + +        G     +    +++    P++ T  Q  AI ++ +DM +   M R++ G
Sbjct: 618  IRLYSARMASPGHAFGPDTPWQREMEDAFPYAETGDQLEAIDEVKRDMERGIPMDRLICG 677

Query: 301  DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            DVG GKT +A+ A   AV+ G Q  ++ P  +L QQH     +      + V  ++    
Sbjct: 678  DVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHLSTFAERFSGFPLNVRPMSRFQS 737

Query: 361  QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
                +  LE +  G   ++IGTH LF   +++ +L L+I+DE+ RFGV+ +  +    T 
Sbjct: 738  DGEVKATLEGLREGSVDVVIGTHRLFSPEVRFKELGLIIIDEEQRFGVEHKEAMKHMRTQ 797

Query: 421  PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              VL M+ATPIPRTL +   G  ++S I   P  R PI T + P +   ++   ++  L 
Sbjct: 798  VDVLAMSATPIPRTLEMGLTGIREMSTILTPPEERHPILTFVGPYDN-KQIGAAIRRELM 856

Query: 481  EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
               + +++  ++    +            L     + +A+ HG+M++   E +M  F   
Sbjct: 857  RDGQIFFVHNRVSSINKV-----AAMLRELVPE--ARVAVAHGQMNEHQLEKIMVGFWER 909

Query: 541  TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-- 598
               LL+ TT++E G+DV +A+ +I++ A+++GL+QLHQLRGRVGRG E      LY P  
Sbjct: 910  EFDLLVCTTIVESGLDVPNANTLIVDRADNYGLSQLHQLRGRVGRGRERGYAYFLYPPEK 969

Query: 599  PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
            PL++ ++ RL+ +    +   G  +A +DL+ R  G ILG +QSG         +L+  +
Sbjct: 970  PLTETAHERLATISQHTEMGAGMYVAMKDLEIRGAGNILGAEQSGFI--AGVGFDLYVRM 1027

Query: 656  LEIARKD 662
            +  A ++
Sbjct: 1028 MAEAVQE 1034


>gi|296436295|gb|ADH18469.1| transcription-repair coupling factor [Chlamydia trachomatis G/9768]
 gi|296438154|gb|ADH20315.1| transcription-repair coupling factor [Chlamydia trachomatis
           G/11074]
 gi|297140655|gb|ADH97413.1| transcription-repair coupling factor [Chlamydia trachomatis G/9301]
          Length = 1079

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 141/459 (30%), Positives = 218/459 (47%), Gaps = 16/459 (3%)

Query: 213 RKAKDFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
                       R R L+   ++     L+ M  Q            G+   K   + P+
Sbjct: 496 PDLHHLNGAKWRRSRELSEKSVILYAEKLIQMEAQRSTANSFIYPPHGEEVIKFAESFPY 555

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPI 330
             T  Q  AI  I  DM     M R++ GD G GKT + + A   AV  G  Q ++M P 
Sbjct: 556 EETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAVCDGHKQVIVMVPT 615

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH+E   +      I + +++        +K LE IA G+  I+IGTH +   +I
Sbjct: 616 TILANQHFETFSQRMAGLPITIGLLSRFSQGKTMKKTLEDIAQGRIDILIGTHKVINKAI 675

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +++   L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL L+  G  D+S IT 
Sbjct: 676 EFHNPGLLIIDEEQRFGVKAKDSLKERFPTIDCLTVSATPIPRTLYLSLSGARDLSLITM 735

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T ++  +  + +   ++  L  G + Y I  +IE         + E   +L
Sbjct: 736 PPLDRLPVSTFVMEHSE-ETLSAAIRHELLRGGQVYVIHNRIESIF-----RLGETIRTL 789

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + I + HG+M   +  S+   FK     +L+AT +IE GID+ +A+ I+I++A+ 
Sbjct: 790 IPE--ARIGVAHGQMHANELASIFYKFKTQQTNVLVATALIENGIDIPNANTILIDHADK 847

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL--KNTEDGFLIAEEDLK 626
           FG+A L+Q++GRVGR  + + C  L      LS  +  RL  L  +    G  IA  DL+
Sbjct: 848 FGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPTSKRLEALNKQEYGGGMKIALHDLE 907

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R  G ILG  QSG    +     L+  LL+ A    KH
Sbjct: 908 IRGAGNILGTDQSGHISAVGFN--LYCKLLKKAVAALKH 944


>gi|116328533|ref|YP_798253.1| transcription-repair coupling factor [Leptospira borgpetersenii
            serovar Hardjo-bovis L550]
 gi|116331261|ref|YP_800979.1| transcription-repair coupling factor [Leptospira borgpetersenii
            serovar Hardjo-bovis JB197]
 gi|116121277|gb|ABJ79320.1| Transcription-repair coupling factor [Leptospira borgpetersenii
            serovar Hardjo-bovis L550]
 gi|116124950|gb|ABJ76221.1| Transcription-repair coupling factor [Leptospira borgpetersenii
            serovar Hardjo-bovis JB197]
          Length = 1176

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 130/445 (29%), Positives = 222/445 (49%), Gaps = 17/445 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W           E LA  +    M     K  G     +    ++      +  T  Q  
Sbjct: 582  WKKTKDRVQKAVETLAEDLV--QMYSNRLKLQGYAFPPDTIYQEEFEAEFEYEETPDQIE 639

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI+ + +D+     M R++ GDVG GKT VA+ A      AG Q +++AP  ILA QHY 
Sbjct: 640  AIEAVKKDLESSVPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIMMLAPTTILALQHYN 699

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K   +N  + VE+++     A  R+ L   + G+  +IIGTHA+    ++   L L+I
Sbjct: 700  TFKNRFRNYPLRVELVSRFKTSAEIREILSDFSLGKIDMIIGTHAILSSKLKPKNLGLLI 759

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV  +  + +      VL +TATPIPRTL +   G  ++S I   P  R+ ++
Sbjct: 760  IDEEQRFGVNHKEAIKRFKNLVDVLTLTATPIPRTLHMALTGIRELSIIATPPKNRQSVE 819

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++  +  D + E ++  +    + +++  ++E   E   + + E    +      SI 
Sbjct: 820  TYVLEEDE-DLIAEAIRNEIQRDGQVFYLYNRVETI-EQETKYLGEIVPEV------SIG 871

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            I+HG+M++ + E  +  F N    +L+ TT+IE GID+ + + + ++ A+ FGL+QL+Q+
Sbjct: 872  ILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFGLSQLYQI 931

Query: 580  RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL---KNTEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR +  +   LL      +++ +  RL+ +   +    GF +A  DL+ R  G +L
Sbjct: 932  RGRVGRSDRKAFAYLLLPKDRVVTEQAEKRLNTIYEYQELGSGFKVAMRDLEIRGAGNLL 991

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIA 659
            G +QSG    +    +L+  +LE A
Sbjct: 992  GKEQSG--DIMEVGFDLYVRMLEEA 1014


>gi|166154090|ref|YP_001654208.1| transcription-repair coupling factor [Chlamydia trachomatis 434/Bu]
 gi|301335295|ref|ZP_07223539.1| transcription-repair coupling factor [Chlamydia trachomatis L2tet1]
 gi|165930078|emb|CAP03561.1| transcription-repair coupling factor [Chlamydia trachomatis 434/Bu]
          Length = 1079

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 141/459 (30%), Positives = 219/459 (47%), Gaps = 16/459 (3%)

Query: 213 RKAKDFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
                       R R L+ + ++     L+ M  Q            G+   K   + P+
Sbjct: 496 PDLHHLNGAKWRRSRELSENSVILYAEKLIQMEAQRSTANSFIYPPHGEEVIKFAESFPY 555

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPI 330
             T  Q  AI  I  DM     M R++ GD G GKT + + A   AV  G  Q ++M P 
Sbjct: 556 EETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAVCDGHKQVIVMVPT 615

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH+E   +      I + +++        +K LE IA G+  I+IGTH +   +I
Sbjct: 616 TILANQHFETFSQRMAGLPITIGLLSRFSQGKTMKKTLEDIAQGRIDILIGTHKVINKAI 675

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +++   L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL L+  G  D+S IT 
Sbjct: 676 EFHNPGLLIIDEEQRFGVKAKDSLKERFPTIDCLTVSATPIPRTLYLSLSGARDLSLITM 735

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T ++  +  + +   ++  L  G + Y I  +IE         + E   +L
Sbjct: 736 PPLDRLPVSTFVMEHSE-ETLSAAIRHELLRGGQVYVIHNRIESIF-----RLGETIRTL 789

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + I + HG+M   +  S+   FK     +L+AT +IE GID+ +A+ I+I++A+ 
Sbjct: 790 IPE--ARIGVAHGQMHADELASIFYKFKTQQTNVLVATALIENGIDIPNANTILIDHADK 847

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL--KNTEDGFLIAEEDLK 626
           FG+A L+Q++GRVGR  + + C  L      LS  +  RL  L  +    G  IA  DL+
Sbjct: 848 FGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPTSKRLEALNKQEYGGGMKIALHDLE 907

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R  G ILG  QSG    +     L+  LL+ A    KH
Sbjct: 908 IRGAGNILGTDQSGHISAVGFN--LYCKLLKKAVAALKH 944


>gi|282866318|ref|ZP_06275364.1| transcription-repair coupling factor [Streptomyces sp. ACTE]
 gi|282558904|gb|EFB64460.1| transcription-repair coupling factor [Streptomyces sp. ACTE]
          Length = 1176

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 135/488 (27%), Positives = 232/488 (47%), Gaps = 22/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT   +      + +A  +  L   +            +    +++    P++ T  Q 
Sbjct: 575  DWTKTKQRAKKAVKEIAADLIKLYSARMAAPGHTFA--PDTPWQRELEDAFPYAETPDQL 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQHY
Sbjct: 633  STIAEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHY 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V  ++        +  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 693  GTFTERYAQFPVNVRALSRFQSDTESKATLEGLRDGSVDLVIGTHRLFSSETKFKDLGLV 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 753  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 813  LTFVGPYEE-KQIGAAVRRELLREGQVFYIHNRVESID-----RAAARLREIVPE--ARI 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M +   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 865  ATAHGQMGEGALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 924

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG +      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 925  LRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 984

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-----YLY 688
            LG +QSG         +L+  ++  A  D +  +    +  +     I + +     + Y
Sbjct: 985  LGGEQSGHI--AGVGFDLYIRMVGEAVADYRAAVDGGEEEEAPLEVKIELPVDAHVPHDY 1042

Query: 689  QYNEAFQF 696
               E  + 
Sbjct: 1043 APGERLRL 1050


>gi|13235409|emb|CAC33609.1| Mfd protein [Rickettsia montanensis]
          Length = 1121

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 138/466 (29%), Positives = 241/466 (51%), Gaps = 26/466 (5%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
           +  ++R+    L   QIA      + K     P+  + +   K   N PFS T+ Q +AI
Sbjct: 532 AKLKKRIKEIALHLIQIA-----AKRKLSSSAPVEFDLEEYDKFCANFPFSETEDQLTAI 586

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIMAPIGILAQQH 337
            DI +D+     M R++ GDVG GKT VA+ A+        E   Q  I+ P  IL  QH
Sbjct: 587 NDIKEDLRNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAIVVPTTILCSQH 646

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           +    +  +   + ++ ++  +     +     +  G+ +IIIGTH+L   +I+++ L L
Sbjct: 647 FSRFIERFKGFGLNIKQLSSVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKL 706

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+  FGV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  
Sbjct: 707 LIIDEEQHFGVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLE 766

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           ++T ++P + +  + + L      G +++++ P+I++ ++   +        +    +  
Sbjct: 767 VRTSVMPFDPV-IIRDALLREHFRGGRSFYVVPRIKDIEDIEKQ-----LKQIVPELSYK 820

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  HG+M+    + VM  F  G   +L++TT+IE GID+ +A+ +II  A+  GL+QL+
Sbjct: 821 IA--HGKMAPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHKADMLGLSQLY 878

Query: 578 QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGE 632
           QLRGR+GRG+      L+   H  ++ +S  RL +++N+     GF IA  D+  R  G 
Sbjct: 879 QLRGRIGRGKMRGYAYLMVASHKKMTSHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGN 938

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH--ILTQDPDLTSV 676
           ++G +QSG         EL+  +LE      K   I+++ P + ++
Sbjct: 939 LIGEEQSGQI--KEVGTELYQEMLEEQIAIFKDEPIVSEQPFIPTI 982


>gi|15892836|ref|NP_360550.1| transcription-repair coupling factor [Rickettsia conorii str.
           Malish 7]
 gi|81854092|sp|Q92H58|MFD_RICCN RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|15620021|gb|AAL03451.1| transcription-repair coupling factor [Rickettsia conorii str.
           Malish 7]
          Length = 1122

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 136/466 (29%), Positives = 238/466 (51%), Gaps = 26/466 (5%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
           +  ++R+    L   QIA      + K      +  + +   K   N PFS T+ Q  AI
Sbjct: 533 AKLKKRIKEIALHLIQIA-----AKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAI 587

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIMAPIGILAQQH 337
            DI +D+     M R++ GDVG GKT VA+ A+        E   Q  ++ P  IL  QH
Sbjct: 588 NDIKEDLRNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQH 647

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           +    +  +   + ++ ++  +     +     +  G+ +IIIGTH+L   +I+++ L L
Sbjct: 648 FSRFIERFKGFGLNIKQLSSVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKL 707

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+  FGV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  
Sbjct: 708 LIIDEEQHFGVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLE 767

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + T ++P + +  + + L      G +++++ P+I++ ++   +        +    +  
Sbjct: 768 VHTSVMPYDPV-IIRDALLREHFRGGRSFYVVPRIKDIEDIAKQ-----LKQIVPELSYK 821

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  +G+M+    + VM  F  G   +L++TT+IE GID+ +A+ +II NA+  GL+QL+
Sbjct: 822 IA--YGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLY 879

Query: 578 QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGE 632
           QLRGR+GRG+      L    H  ++ +S  RL +++N+     GF IA  D+  R  G 
Sbjct: 880 QLRGRIGRGKMRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASRDMDLRGFGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH--ILTQDPDLTSV 676
           ++G +QSG         EL+  +LE      K   I+++ P + ++
Sbjct: 940 LIGEEQSGQI--KEVGTELYQEMLEEQIAIFKDESIVSEQPFIPTI 983


>gi|229586940|ref|YP_002845441.1| Transcription-repair coupling factor [Rickettsia africae ESF-5]
 gi|228021990|gb|ACP53698.1| Transcription-repair coupling factor [Rickettsia africae ESF-5]
          Length = 1122

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 136/466 (29%), Positives = 238/466 (51%), Gaps = 26/466 (5%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
           +  ++R+    L   QIA      + K      +  + +   K   N PFS T+ Q  AI
Sbjct: 533 AKLKKRIKEIALHLIQIA-----AKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAI 587

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIMAPIGILAQQH 337
            DI +D+     M R++ GDVG GKT VA+ A+        E   Q  ++ P  IL  QH
Sbjct: 588 NDIKEDLRNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQH 647

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           +    +  +   + ++ ++  +     +     +  G+ +IIIGTH+L   +I+++ L L
Sbjct: 648 FSRFIERFKGFGLNIKQLSSVISSKEAKIIRSELKSGKINIIIGTHSLLHKNIKFFNLKL 707

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+  FGV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  
Sbjct: 708 LIIDEEQHFGVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLE 767

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + T ++P + +  + + L      G +++++ P+I++ ++   +        +    +  
Sbjct: 768 VHTSVMPCDPV-IIRDALLREHFRGGRSFYVVPRIKDIEDIAKQ-----LKQIVPELSYK 821

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  +G+M+    + VM  F  G   +L++TT+IE GID+ +A+ +II NA+  GL+QL+
Sbjct: 822 IA--YGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLY 879

Query: 578 QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGE 632
           QLRGR+GRG+      L    H  ++ +S  RL +++N+     GF IA  D+  R  G 
Sbjct: 880 QLRGRIGRGKMRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASRDMDLRGFGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH--ILTQDPDLTSV 676
           ++G +QSG         EL+  +LE      K   I+++ P + ++
Sbjct: 940 LIGEEQSGQI--KEVGTELYQEMLEEQIAIFKDEPIVSEQPFIPTI 983


>gi|29830092|ref|NP_824726.1| transcriptional-repair coupling factor [Streptomyces avermitilis
            MA-4680]
 gi|29607202|dbj|BAC71261.1| putative transcriptional-repair coupling factor [Streptomyces
            avermitilis MA-4680]
          Length = 1176

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 137/488 (28%), Positives = 232/488 (47%), Gaps = 22/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 575  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGSDTPWQRELEDAFPYAETPDQL 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 633  TTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                       + V  ++        +  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 693  GTFGDRYSQFPVNVRALSRFQTDTEAKATLEGLREGSVDVVIGTHRLFSSETKFKDLGLV 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 753  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 813  LTFVGPYEER-QIGAAIRRELLREGQVFYIHNRVESID-----RAAARLREIVPE--ARI 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 865  ATAHGQMSEQTLEQVVVDFWEKKYDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 924

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 925  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 984

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA----RKDAKHILTQDPDLT-SVRGQSIRILLYLY 688
            LG +QSG         +L+  ++  A    R   +  + ++P L   +       + + Y
Sbjct: 985  LGGEQSGHI--AGVGFDLYVRMVGEAVADYRASLEGGVEEEPPLEVKIELPVDAHVPHDY 1042

Query: 689  QYNEAFQF 696
               E  + 
Sbjct: 1043 APGERLRL 1050


>gi|329941162|ref|ZP_08290441.1| transcriptional-repair coupling factor [Streptomyces
            griseoaurantiacus M045]
 gi|329299693|gb|EGG43592.1| transcriptional-repair coupling factor [Streptomyces
            griseoaurantiacus M045]
          Length = 1176

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 138/488 (28%), Positives = 232/488 (47%), Gaps = 22/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 575  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGGDTPWQRELEDAFPYAETPDQL 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 633  TTIAEVKDDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V  ++        +  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 693  GTFSERYAQFPVNVRALSRFQTDTEAKAVLEGLREGSVDVVIGTHRLFSSETKFKDLGLV 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 753  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 813  LTFVGPYEE-KQIGAAVRRELLREGQVFYIHNRVESID-----RAAARLREIVPE--ARI 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 865  ATAHGQMSEQALEQVVVDFWEKRFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 924

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 925  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 984

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL----TQDPDLT-SVRGQSIRILLYLY 688
            LG +QSG         +L+  ++  A  D +  L     ++P L   +       + + Y
Sbjct: 985  LGGEQSGHI--AGVGFDLYVRMVGEAVADYRAALDGGAQEEPPLEVKIELPVDAHVPHDY 1042

Query: 689  QYNEAFQF 696
               E  + 
Sbjct: 1043 APGERLRL 1050


>gi|163853560|ref|YP_001641603.1| transcription-repair coupling factor [Methylobacterium extorquens
            PA1]
 gi|163665165|gb|ABY32532.1| transcription-repair coupling factor [Methylobacterium extorquens
            PA1]
          Length = 1196

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 140/485 (28%), Positives = 232/485 (47%), Gaps = 27/485 (5%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR--KQFKK 249
            +LL +        A           D       + R A  +    ++A  L++       
Sbjct: 573  ELLTRYGSEDSEVAL----------DRLGGGAWQARKAKMKRRILEMAGDLIKIAAARFV 622

Query: 250  EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
            +    +     + ++      F  T+ Q +AI  +L D++    M R++ GDVG GKT V
Sbjct: 623  KSAPSLKAPEGLYEEFAARFAFQETEDQANAIDAVLDDLNAGRPMDRLVCGDVGFGKTEV 682

Query: 310  ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            AL A  AA  +G Q  ++ P  +LA+QH+    +  +   I V  ++  +    +R+   
Sbjct: 683  ALRAAFAAAISGKQVAVVVPTTLLARQHFRTFAERFKGLPINVAQLSRFVSAGDQRQNRA 742

Query: 370  RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             +A G   I++GTHAL   ++ +  L L+IVDE+  FGV  + +L       HVL ++AT
Sbjct: 743  GLADGTVDIVVGTHALLAKNVAFKDLGLIIVDEEQHFGVAHKERLKALQADVHVLTLSAT 802

Query: 430  PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            PIPRTL L   G  ++S I   P  R  ++T + P + +  V E L      G +++++ 
Sbjct: 803  PIPRTLQLAMTGVRELSIIATPPMDRLAVRTFVTPFDPL-LVREALLRERYRGGQSFYVA 861

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            P+IE+  E       E          +++A+ HG+M+    E VM +F  G   +L++TT
Sbjct: 862  PRIEDLAEVKRFLDTEM-------PETTVAVAHGQMAAGQLEDVMTAFYEGKYDVLLSTT 914

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
            ++E G+D+  A+ +I+  A+ FGLA L+QLRGRVGR +  +  +        L+  +  R
Sbjct: 915  IVESGLDIPTANTLIVHRADMFGLAALYQLRGRVGRSKARAYALFTTPANRQLTTQAEQR 974

Query: 608  LSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            L VL++ +    GF +A  DL  R  G +LG  QSG         EL+  +LE A    K
Sbjct: 975  LKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDAQSGHI--KEVGYELYQQMLEDAVTALK 1032

Query: 665  HILTQ 669
              + +
Sbjct: 1033 AGIEE 1037


>gi|11992016|gb|AAG42403.1|AF300471_6 Mfd protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 1145

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 135/450 (30%), Positives = 225/450 (50%), Gaps = 34/450 (7%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQK-----------------ILRNIPFSPTKSQESA 280
           +A    + + K       +V+G   QK                  +   P+  T+ QE A
Sbjct: 545 VAWQAXKSKMKXHSRYCRSVDGDCCQKGVXTSPCRIGDPASYPVFVDRFPYQETEDQEHA 604

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           I D+++D+++   M R++ GDVG GKT VAL A   A  +G Q  ++ P  +LA+QHY  
Sbjct: 605 ISDVIEDLAKGKPMDRLICGDVGFGKTEVALRAAFVAAMSGLQVALVCPTTLLARQHYSN 664

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
             +  +   + +  ++  +P    +   E +A G   I+IGTHA+   +I + +L LVIV
Sbjct: 665 FLERFEGFPLQIGRLSRLVPAKEAKACREALADGTIDIVIGTHAILSKTIDFNRLGLVIV 724

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE+  FGV  + +L       H L +TATPIPRTL +   G  ++S I   P  R  +++
Sbjct: 725 DEEQHFGVVHKERLKALKNDVHQLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLAVRS 784

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIA 519
            ++P + +  + E L      G +++ + P+I +  +            L E        
Sbjct: 785 YVMPWDPVA-IREALLREHYRGGQSFIVVPRISDLADLE--------KFLSEQVPEIRFV 835

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M+  + E+ M +F +    +L++TT++E G+D+  A+ +I+  A+ FGL+QL+Q+
Sbjct: 836 IAHGQMAATEVENRMSAFYDKKFDVLLSTTIVESGLDIPSANTMIVYRADRFGLSQLYQI 895

Query: 580 RGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR +  +   L    +  +S+ +  RL +L   +    GF +A  DL  R  G +L
Sbjct: 896 RGRVGRSKTRAYAYLTTPVNHSISETAEKRLHILSTLDSLGAGFQLASHDLDIRGAGNLL 955

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG         EL+ S+LE A   AK
Sbjct: 956 GDEQSGHI--KEVGFELYQSMLEDAILVAK 983


>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
            asiaticus str. psy62]
 gi|254040624|gb|ACT57420.1| transcription-repair coupling factor [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1187

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 142/449 (31%), Positives = 230/449 (51%), Gaps = 17/449 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D    S  + R A  +     +A  L+    +       P+ V   +  + ++  P   T
Sbjct: 568  DKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVET 627

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
            + QE AI  ++QD+S    M R++ GDVG GKT +AL A   AV  G Q  ++AP  +L 
Sbjct: 628  EDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLV 687

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH+    +  Q   + +  I+  +         + I  GQ  I+IGTHAL    I +  
Sbjct: 688  RQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFAN 747

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L L+I+DE+  FGV+ +  L +  T  HVL ++ATPIPRTL L   G  ++S I+  P  
Sbjct: 748  LGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPIN 807

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R   +T I   + +  V E L      G +++++CP++ + ++       E         
Sbjct: 808  RIACRTSISIFDPL-VVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEV-------P 859

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               IA+ HG+MS  + E  M++F  G   +L++T+++E G+D+  A+ +I++ A+ FGLA
Sbjct: 860  ELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLA 919

Query: 575  QLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
            QL+QLRGRVGR +  S  + L   + PL+  +  RL +L++      GF +A  DL  R 
Sbjct: 920  QLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLASYDLDIRG 979

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             G +LG +QSG  + +    EL+  +LE 
Sbjct: 980  TGNLLGEEQSGHIREI--GFELYQKMLEE 1006


>gi|269794110|ref|YP_003313565.1| transcription-repair coupling factor Mfd [Sanguibacter keddieii DSM
            10542]
 gi|269096295|gb|ACZ20731.1| transcription-repair coupling factor Mfd [Sanguibacter keddieii DSM
            10542]
          Length = 1212

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 129/483 (26%), Positives = 232/483 (48%), Gaps = 17/483 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +A ++  L          G     +    +++     ++ T  Q 
Sbjct: 604  DWAKTKGRAKKAIKEIASELIRLY--SARMATKGHAFGPDTPWQRELEDAFAYTETPDQL 661

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++ QDM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQHY
Sbjct: 662  ATIDEVKQDMEKTIPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHY 721

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      ++V+ ++        ++ ++ +  G   ++IGTH L   SI++  L LV
Sbjct: 722  DTFAERYAGFPVVVKGLSRFQTDKEAKEIVDGLKEGTVDVVIGTHRLLSGSIKFKDLGLV 781

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  L Q  T   VL M+ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 782  VVDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPV 841

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   ++   ++  L    + +++  +++            R   L     + I
Sbjct: 842  LTYVGAYDD-KQITAAIRRELLREGQLFYVHNKVDSID-----RTAARLKELVPE--ARI 893

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E V+  F      +L+ TT+IE G+D+ +A+ +I+E A+  GL+QLHQ
Sbjct: 894  EVAHGKMGEHQLERVIMDFWEKKFDVLVCTTIIETGLDISNANTLILERADMLGLSQLHQ 953

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG + +    LY P  PL++ ++ RL+ +    D   G  +A +DL+ R  G +
Sbjct: 954  LRGRVGRGRDRAYAYFLYPPERPLTETAHDRLATIAANTDLGSGMAVAMKDLEIRGAGNL 1013

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +QSG         +L+  ++  A    +    ++    ++       L + Y  +E 
Sbjct: 1014 LGGEQSGHI--AGVGFDLYVRMVGEAVAAFRGEAEEEAPEVTIELPVDAHLPHDYIGHER 1071

Query: 694  FQF 696
             + 
Sbjct: 1072 LRL 1074


>gi|315122360|ref|YP_004062849.1| transcription-repair coupling factor [Candidatus Liberibacter
            solanacearum CLso-ZC1]
 gi|313495762|gb|ADR52361.1| transcription-repair coupling factor [Candidatus Liberibacter
            solanacearum CLso-ZC1]
          Length = 1185

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 137/443 (30%), Positives = 228/443 (51%), Gaps = 19/443 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W S         E LA ++  +  ++         + V   +  + ++  P   T+ QE 
Sbjct: 574  WQSRKSNLKKRLEDLAQKLVDIAAKR--LIHNVPALTVSQDLYSQFVKKFPHVETEDQEK 631

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            A+  ++QD +  + M R++ GDVG GKT +AL A   AV  G Q  ++AP  +L +QH+ 
Sbjct: 632  AVDAVIQDFTSGHLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFR 691

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +  Q+  + +  ++  +         + IA GQ  I+IGTHAL    I +  L L+I
Sbjct: 692  LFSERFQDFPVRIVSVSRFVKPKEVALHKKAIAEGQVDIVIGTHALLDPKITFSNLGLII 751

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+  FGV+ +  L +  T  HVL ++ATPIPRTL L   G  ++S I+  P  R   +
Sbjct: 752  VDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACR 811

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SI 518
            T I   + +  + E L      G +++++CP++ +  +         ++ L        +
Sbjct: 812  TSISIFDPL-LIRETLMREYYRGGQSFYVCPRLLDLDKC--------YDFLQSEVPELKV 862

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+MS  + E  M+ F      +L++T+++E G+D+ +A+ III+ A+ FGLAQL+Q
Sbjct: 863  AMAHGQMSPKNLEETMNGFYERKYDILLSTSIVESGLDLPNANTIIIQRADMFGLAQLYQ 922

Query: 579  LRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGR +  S  + L   + PL+ ++  RL +L++      GF +A  DL  R  G +
Sbjct: 923  LRGRVGRSKISSFALFLLPENKPLTSSAQKRLRILQSLNTLGAGFQLASHDLDIRGTGNL 982

Query: 634  LGIKQSGMPKFLIAQPELHDSLL 656
            LG +QSG         EL+  +L
Sbjct: 983  LGEEQSGHI--KEVGFELYQKML 1003


>gi|307324345|ref|ZP_07603553.1| transcription-repair coupling factor [Streptomyces violaceusniger Tu
            4113]
 gi|306890076|gb|EFN21054.1| transcription-repair coupling factor [Streptomyces violaceusniger Tu
            4113]
          Length = 1236

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 137/489 (28%), Positives = 235/489 (48%), Gaps = 24/489 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 635  DWTKTKARAKKAVKEIAADLIRLY--SARMAAPGHAFGADTPWQRELEDAFPYAETPDQL 692

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 693  TTIAEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 752

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V  ++        +  LE +  G   I+IGTH LF    ++  L LV
Sbjct: 753  GTFGERYGQFPVNVRALSRFQTDTEAKAVLEGLKDGAVDIVIGTHRLFSSETKFKDLGLV 812

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 813  VVDEEQRFGVEHKEQLKKLRANVDVLSMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 872

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T + P  +  ++   ++  L    + ++I  ++E        S+      L E    + 
Sbjct: 873  LTFVGPYEQ-KQIGAAIRRELLREGQVFYIHNRVE--------SIDRAAAKLREIVPEAR 923

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLH
Sbjct: 924  IATAHGQMSETALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLH 983

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGRG +      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G 
Sbjct: 984  QLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGN 1043

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-----YL 687
            +LG +QSG         +L+  ++  A  D +  +    +  +     I + +     + 
Sbjct: 1044 LLGGEQSGHI--AGVGFDLYVRMVGEAVADYRASIEGGVEEEAPLEVKIELPVDAHVPHD 1101

Query: 688  YQYNEAFQF 696
            Y   E  + 
Sbjct: 1102 YAPGERLRL 1110


>gi|317153444|ref|YP_004121492.1| transcription-repair coupling factor [Desulfovibrio aespoeensis
            Aspo-2]
 gi|316943695|gb|ADU62746.1| transcription-repair coupling factor [Desulfovibrio aespoeensis
            Aspo-2]
          Length = 1160

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 137/462 (29%), Positives = 225/462 (48%), Gaps = 20/462 (4%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W++   +     E +A ++  +   ++     G        +  +      F  T  Q+ 
Sbjct: 560  WSATTAKVRKAVEKIAQELVEMYAFRRVA--KGFSYGPPDDMYSEFEATFGFEETPDQDK 617

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            A++D+  DM +   M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QHY+
Sbjct: 618  AVRDVFSDMEKPEPMDRLVCGDVGFGKTEVALRAAFRAALEGRQTALLCPTTVLAEQHYQ 677

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
               +  +   + + +++  +P   ++  L+  + G+  I+IGTH +    ++   L L+I
Sbjct: 678  TFSRRMEGFPVRIGLLSRFVPAKRQQAVLQAASRGELDILIGTHRILSKDVELPNLGLLI 737

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            +DE+ RFGV+ + KL        VL +TATPIPRTL L+  G   +S I   P  RKP++
Sbjct: 738  LDEEQRFGVKHKEKLKHFRHNIDVLTLTATPIPRTLQLSLSGIRGLSVIETPPLDRKPVE 797

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T I   + +  +   L   L  G + YW+  ++   +      VVE    L     + + 
Sbjct: 798  TAITERDPVA-LKAALHRELERGGQVYWVYNRVNGLE-----RVVEFVRELAPD--ARVG 849

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            + HG+MS+   E  M  F +G   +L+ T ++E G+D  +A+ +I++ A+ FGL QL+QL
Sbjct: 850  MAHGQMSEKGLEDAMRGFWHGELDVLVCTAIVESGLDFPNANTLIVDQAQLFGLGQLYQL 909

Query: 580  RGRVGRGEEISSCILLYH--PPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEGEIL 634
            RGRVGR +  +    +      LS+    RL +   +     GF IA EDL+ R  G IL
Sbjct: 910  RGRVGRSDRQAYAYFVVPSIDDLSEMVRKRLRIILDMDYLGAGFKIAMEDLRMRGAGNIL 969

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAK---HILTQDPDL 673
            G  QSG         +L   +LE   +  +    I   DP+L
Sbjct: 970  GEAQSGQI--AKVGLDLFLEMLEEEVRRVRGETEIRASDPEL 1009


>gi|291286200|ref|YP_003503016.1| transcription-repair coupling factor [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883360|gb|ADD67060.1| transcription-repair coupling factor [Denitrovibrio acetiphilus DSM
           12809]
          Length = 1103

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 140/434 (32%), Positives = 223/434 (51%), Gaps = 16/434 (3%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           + LL +  Q K E G     +G +     ++  +  T  Q SAI D+  DM     M R+
Sbjct: 530 MDLLKLYAQRKVEKGFSFTDDGNMLDNFEQSFEYDETDDQLSAIHDVYNDMESAMPMERL 589

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           + GDVG GKT VA+ A   AV  G Q  ++ P  +LA+QHY    +  ++  + V+ ++ 
Sbjct: 590 VCGDVGFGKTEVAMRAACKAVAGGKQVAVLVPTTVLARQHYMTFFERFKDLPVKVDYVSR 649

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
                  R+ L  ++ G   I+IGTH +    I++  L L+I+DE+ RFGV  + K+   
Sbjct: 650 FRTARDTRQILVDLSKGDLDILIGTHKMLSKEIEFQDLGLLIIDEEQRFGVAHKEKIKAM 709

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            +   VL ++ATPIPRTL L+  G  DIS I   P  R P+ T +I   R  EV   ++ 
Sbjct: 710 RSNVDVLYLSATPIPRTLQLSLSGIRDISTIDTPPVDRLPVITKVI--KRDVEVKNAIQR 767

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            L  G + +++  ++E  +                   ++++I HG+M+  + E ++  F
Sbjct: 768 ELERGGQVFFLHNRVENIQTVAAGVKN-------MLPGANVSIAHGQMTSSELEKILMEF 820

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G   +L+ T +IE GID+ +A+ I+I +A H GLAQ++QL+GRVGR      C L+  
Sbjct: 821 YSGKTDVLVCTAIIENGIDIANANTIVINDAAHLGLAQIYQLKGRVGRSGRRGYCYLVVE 880

Query: 598 --PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
               LS  +  RL +++   D   G  IA  DL+ R  G++LG  QSG    +    EL 
Sbjct: 881 QFSSLSDVAQKRLKIIQQLSDLGSGVKIAFYDLQLRGAGDLLGADQSGFM--VKVGYELF 938

Query: 653 DSLLEIARKDAKHI 666
            ++++ A KD K I
Sbjct: 939 IAMIDEAVKDLKGI 952


>gi|308176608|ref|YP_003916014.1| transcription-repair-coupling factor [Arthrobacter arilaitensis
            Re117]
 gi|307744071|emb|CBT75043.1| transcription-repair-coupling factor [Arthrobacter arilaitensis
            Re117]
          Length = 1204

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 125/436 (28%), Positives = 217/436 (49%), Gaps = 16/436 (3%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
            ++ ++ R A  E+    I L   R   +         +     ++     F  T  Q +A
Sbjct: 600  STKSKARKAVKEIAGDLIKLYSARMASRGH---AFGPDTPWQNELEEAFAFIETPDQLTA 656

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            I ++  DM ++  M R++ GDVG GKT +A+ A   AV+   Q  ++ P  +LA QH++ 
Sbjct: 657  INEVKSDMEKEIPMDRLISGDVGFGKTEIAVRAAFKAVQDSKQVAVLVPTTLLASQHHQT 716

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
              +      + V+ ++        ++ L  +  G   I+IGTH L   ++++  L LVIV
Sbjct: 717  FTERYSGFPVRVKTLSRFQTAKESKEILAGLKDGSVDIVIGTHRLLSKNVEFKNLGLVIV 776

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+ RFGV+ + +L +  T   VL M+ATPIPRTL ++  G  + S +   P  R P+ T
Sbjct: 777  DEEQRFGVEHKEELKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPVLT 836

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             + P +   ++   +K  L    + +++  ++   +      V      L     + I +
Sbjct: 837  YVGPRSD-KQISAAIKRELMRDGQVFFVHNRVSSIE-----RVAAELRELAPE--ARIEV 888

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+MS+   E ++  F      +L++TT+IE G+D+ +A+ +I++ A ++GL+QLHQLR
Sbjct: 889  AHGKMSESRLERIIQDFWEKKFDVLVSTTIIETGLDISNANTLIVDRANNYGLSQLHQLR 948

Query: 581  GRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
            GRVGRG E +    L+    PL + +  RL  +        G+ +A +DL+ R  G +LG
Sbjct: 949  GRVGRGRERAYAYFLWDVEKPLGEVALERLKAVAAHNELGSGYQLAMKDLELRGAGNLLG 1008

Query: 636  IKQSGMPKFLIAQPEL 651
             +QSG    +     L
Sbjct: 1009 GEQSGHIAGVGFDLYL 1024


>gi|284033574|ref|YP_003383505.1| transcription-repair coupling factor [Kribbella flavida DSM 17836]
 gi|283812867|gb|ADB34706.1| transcription-repair coupling factor [Kribbella flavida DSM 17836]
          Length = 1212

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 143/493 (29%), Positives = 237/493 (48%), Gaps = 28/493 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +AG++  L   +Q     G     +     ++    PF  T  Q 
Sbjct: 610  DWAKRKGRARKAVRQIAGELIKLYAARQA--TKGHAFAKDTPWQAELEDAFPFVETPDQL 667

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I D+ +DM +   M RI+ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQHY
Sbjct: 668  ATIDDVKRDMERVTPMDRIVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHY 727

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V  ++        +  ++ +A G   ++IGTH LF   +Q+  L LV
Sbjct: 728  ATFAERYAAFPVNVAALSRFQTDKEAKATMDGLADGSVDVVIGTHRLFSGEVQFKDLGLV 787

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ + +L +  TA  VL M+ATPIPRTL ++  G  ++S I   P  R P+
Sbjct: 788  VVDEEQRFGVEHKEQLKRLRTAVDVLTMSATPIPRTLEMSITGIREMSTIATPPEERHPV 847

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   +V   ++  L    + + +  ++   +         R   L     + +
Sbjct: 848  LTFVGPYDE-GQVTAAIRRELLREGQVFVVHNRVNTIE-----KAAARIRQLVPE--ARV 899

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            ++ HG+M +   E V+  F      +++ TT++E GID+ +A+ +I+E A+  GL+QLHQ
Sbjct: 900  SVAHGQMPEHHLEQVIQEFWEKQADVIVCTTIVESGIDISNANTMIVERADLLGLSQLHQ 959

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +     + P  PL++ ++ RL+ +    D   G  +A +DL+ R  G +
Sbjct: 960  LRGRVGRGRERAYAYFFFPPEKPLTETAHDRLATIAQHADLGAGMQVAMKDLEIRGAGNL 1019

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD------AKH-----ILTQDPDLTSVRGQSIR 682
            LG +QSG    +     L+  L+  A  +      A+       L  D  L      S R
Sbjct: 1020 LGGEQSGHIADVGFD--LYVRLVGEAVAEYRGDTQAEEPEVKIELPVDAHLPHDYVPSQR 1077

Query: 683  ILLYLYQYNEAFQ 695
            + L +YQ   A +
Sbjct: 1078 LRLEMYQRLAAVR 1090


>gi|317133014|ref|YP_004092328.1| transcription-repair coupling factor [Ethanoligenens harbinense
            YUAN-3]
 gi|315470993|gb|ADU27597.1| transcription-repair coupling factor [Ethanoligenens harbinense
            YUAN-3]
          Length = 1179

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 150/541 (27%), Positives = 254/541 (46%), Gaps = 34/541 (6%)

Query: 130  KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWI 189
            +++++   +    Y+ H +      + E ++ L       + K  I    +    L  ++
Sbjct: 483  ERIRSLAELTPGDYVVHAAH--GIGVYEGIHKLTV---QGVVKDYIKIRYAGRDTL--YV 535

Query: 190  E---KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
                 DL+ K       E  ++  N  K    EW        A  + +A ++  L   +Q
Sbjct: 536  PVTQLDLVSKY--IGTHEDGHLRLN--KMGGTEWQKAKNRVRAAVKDMAKELIALYAARQ 591

Query: 247  FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
              +  GI    +  + ++      F  T  Q   +++I  DM +   M R+L GDVG GK
Sbjct: 592  --QVKGITFQPDDAMQREFEDRFEFEETDDQLRCVEEIKGDMQRAFPMDRLLCGDVGFGK 649

Query: 307  TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
            T VAL A    +E G Q  I+ P  ILA QH++ I +  +   + + +++       +++
Sbjct: 650  TEVALRAAFKCMENGKQCAILVPTTILAWQHFQTITRRMEGFPVKIGLLSRFRTPHEQQQ 709

Query: 367  ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             L  +A G   I++GTH L Q  +++  L L+IVDE+ RFGV Q+ KL +      VL +
Sbjct: 710  TLRDLARGSVDIVVGTHRLVQKDVRFKSLGLLIVDEEQRFGVAQKEKLKELFKNVDVLTL 769

Query: 427  TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
            +ATPIPRTL +   G  D+S I E P  R P++T ++  +    + + ++  L  G + Y
Sbjct: 770  SATPIPRTLNMAMSGIRDMSVIEEAPQDRHPVQTYVLEHD-WGVLADAVRRELRRGGQVY 828

Query: 487  WICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            ++  ++E  +             LH     + + I HG+M +     V +        +L
Sbjct: 829  YLHNRVESIEG--------TAAKLHALVPDARVGIAHGKMDEETLSRVWEKLLGNELDVL 880

Query: 546  IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKN 603
            + TT+IE G+DV + + +IIE+A+H GL+QLHQ+RGRVGR    +     +     LS  
Sbjct: 881  VCTTIIETGVDVPNCNTLIIEDADHMGLSQLHQIRGRVGRSSRRAFAYFTFRRGKALSDI 940

Query: 604  SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ---PELHDSLLE 657
            +  RL  ++   +   GF IA  DL+ R  G ILG +Q G  + +        L D++LE
Sbjct: 941  ATKRLEAIREYTEFGAGFQIALRDLEIRGAGNILGSQQHGHMESVGYDMYLKLLSDAVLE 1000

Query: 658  I 658
             
Sbjct: 1001 E 1001


>gi|21221548|ref|NP_627327.1| transcriptional-repair coupling factor [Streptomyces coelicolor
            A3(2)]
 gi|10241792|emb|CAC09550.1| putative transcriptional-repair coupling factor [Streptomyces
            coelicolor A3(2)]
          Length = 1184

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 140/489 (28%), Positives = 234/489 (47%), Gaps = 24/489 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P+  T  Q 
Sbjct: 583  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGSDTPWQRELEDAFPYVETPDQL 640

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 641  TTIAEVKDDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 700

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V+ ++        +  LE +  G   I+IGTH LF    ++  L LV
Sbjct: 701  GTFSERYAQFPVSVKALSRFQSDTESKATLEGLREGSVDIVIGTHRLFSSETKFKDLGLV 760

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 761  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 820

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T + P     ++   ++  L    + ++I  ++E        S+      L E    + 
Sbjct: 821  LTFVGPYEHR-QIGAAIRRELLREGQVFYIHNRVE--------SIDRAAAKLREIVPEAR 871

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLH
Sbjct: 872  IATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLH 931

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G 
Sbjct: 932  QLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGN 991

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIA----RKDAKHILTQDPDLT-SVRGQSIRILLYL 687
            +LG +QSG         +L+  ++  A    R   +  + ++P L   +       + + 
Sbjct: 992  LLGGEQSGHI--AGVGFDLYVRMVGEAVADYRASLEGGVEEEPPLEVKIELPVDAHVPHD 1049

Query: 688  YQYNEAFQF 696
            Y   E  + 
Sbjct: 1050 YAPGERLRL 1058


>gi|256787262|ref|ZP_05525693.1| transcriptional-repair coupling factor [Streptomyces lividans TK24]
 gi|289771157|ref|ZP_06530535.1| transcription-repair coupling factor [Streptomyces lividans TK24]
 gi|289701356|gb|EFD68785.1| transcription-repair coupling factor [Streptomyces lividans TK24]
          Length = 1184

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 140/489 (28%), Positives = 234/489 (47%), Gaps = 24/489 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P+  T  Q 
Sbjct: 583  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGSDTPWQRELEDAFPYVETPDQL 640

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 641  TTIAEVKDDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 700

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V+ ++        +  LE +  G   I+IGTH LF    ++  L LV
Sbjct: 701  GTFSERYAQFPVSVKALSRFQSDTESKATLEGLREGSVDIVIGTHRLFSSETKFKDLGLV 760

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 761  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 820

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T + P     ++   ++  L    + ++I  ++E        S+      L E    + 
Sbjct: 821  LTFVGPYEHR-QIGAAIRRELLREGQVFYIHNRVE--------SIDRAAAKLREIVPEAR 871

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLH
Sbjct: 872  IATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLH 931

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G 
Sbjct: 932  QLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGN 991

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIA----RKDAKHILTQDPDLT-SVRGQSIRILLYL 687
            +LG +QSG         +L+  ++  A    R   +  + ++P L   +       + + 
Sbjct: 992  LLGGEQSGHI--AGVGFDLYVRMVGEAVADYRASLEGGVEEEPPLEVKIELPVDAHVPHD 1049

Query: 688  YQYNEAFQF 696
            Y   E  + 
Sbjct: 1050 YAPGERLRL 1058


>gi|269957468|ref|YP_003327257.1| transcription-repair coupling factor [Xylanimonas cellulosilytica DSM
            15894]
 gi|269306149|gb|ACZ31699.1| transcription-repair coupling factor [Xylanimonas cellulosilytica DSM
            15894]
          Length = 1218

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 129/462 (27%), Positives = 229/462 (49%), Gaps = 18/462 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   + + +AG++  L          G     +    +++     +  T  Q 
Sbjct: 611  DWKNTKAKARKHVKEIAGELIRLY--SARMATQGHAFGADTPWQRELEDAFAYIETPDQL 668

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S I ++  DM +   M R++ GDVG GKT +A+ A   A++ G Q  ++ P  +L QQH+
Sbjct: 669  STIDEVKADMEKPTPMDRLVCGDVGYGKTEIAIRAAFKAIQDGKQVAVLVPTTLLVQQHF 728

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +  Q   + V  ++         + ++ +  G   ++IGTH L   ++Q+  L LV
Sbjct: 729  ETFSERYQGFPVKVAALSRFQNPRESEETIKGLKDGTVDVVIGTHRLITGAVQFKDLGLV 788

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L Q  T   VL M+ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 789  IIDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPV 848

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       ++   ++  L    + +++  ++E       +    R   L     + I
Sbjct: 849  LTYVGAYEER-QISAAVRRELLREGQVFYVHNRVESI-----QRTASRLAELVPE--ARI 900

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   + V+  F      +L+ TT++E G+D+ +A+ +I+E A+  GL+QLHQ
Sbjct: 901  GVAHGKMGEHQLDQVIRGFWEKELDVLVCTTIVETGLDISNANTLILERADMLGLSQLHQ 960

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  PL++ ++ RL+ +    D   G  IA +DL+ R  G +
Sbjct: 961  LRGRVGRGRERAYAYFLYPPEKPLTEQAHDRLATMAAHTDLGAGMQIAMKDLEIRGAGNL 1020

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK-HILTQDPDLT 674
            LG +QSG         +L+  ++  A ++ +     + P++T
Sbjct: 1021 LGGEQSGHI--QGVGFDLYVRMVGEAVQNFRGDAPEEQPEVT 1060


>gi|254384864|ref|ZP_05000200.1| transcriptional-repair coupling factor [Streptomyces sp. Mg1]
 gi|194343745|gb|EDX24711.1| transcriptional-repair coupling factor [Streptomyces sp. Mg1]
          Length = 1187

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 139/489 (28%), Positives = 234/489 (47%), Gaps = 24/489 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 586  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHTFGPDTPWQRELEDAFPYAETPDQL 643

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 644  TTIAEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 703

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V+ ++        +  LE +  G   I+IGTH LF    ++  L LV
Sbjct: 704  GTFSERYSQFPVKVKALSRFQSDTESKATLEGLKEGSVDIVIGTHRLFSQETRFKDLGLV 763

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 764  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 823

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T + P     ++   ++  L    + ++I  ++E        S+      L E    + 
Sbjct: 824  LTFVGPYEE-KQIGAAVRRELLREGQCFYIHNRVE--------SIDRAAAKLREIVPEAR 874

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLH
Sbjct: 875  IATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLH 934

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G 
Sbjct: 935  QLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGN 994

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-----YL 687
            +LG +QSG         +L+  ++  A  D +  +    +        I + +     + 
Sbjct: 995  LLGGEQSGHI--AGVGFDLYIRMVGEAVADYRAAIDGGAEEEPPLEVKIELPVDAHVPHD 1052

Query: 688  YQYNEAFQF 696
            Y   E  + 
Sbjct: 1053 YAPGERLRL 1061


>gi|94495555|ref|ZP_01302135.1| transcription-repair coupling factor [Sphingomonas sp. SKA58]
 gi|94424943|gb|EAT09964.1| transcription-repair coupling factor [Sphingomonas sp. SKA58]
          Length = 1169

 Score =  316 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 142/456 (31%), Positives = 223/456 (48%), Gaps = 17/456 (3%)

Query: 217  DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
            D       + R A  +    +IA  L++               +       +   P+  T
Sbjct: 565  DRLGGEAWQRRKAKMKERIREIAGELLKTAAARALRPATVAEPDVAGYPAFVDRFPYQET 624

Query: 275  KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
              Q+ AI D+++D+     M R++ GDVG GKT VAL A   A  AG Q V++ P  +LA
Sbjct: 625  DDQDRAISDVIEDLGAGKPMDRLVCGDVGFGKTEVALRAAFVAAMAGMQVVVICPTTLLA 684

Query: 335  QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            +QH+       +   I +  ++  +P    +     +A G   I++GTHAL    I + +
Sbjct: 685  RQHHMNFVDRFRGFPIEIGRLSRLVPDKEAKAVKAGLADGSIDIVVGTHALLAKGIDFKR 744

Query: 395  LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
            L LVIVDE+ RFGV  + +L    T  HVL +TATPIPRTL +   G  ++S I   P  
Sbjct: 745  LGLVIVDEEQRFGVTHKERLKGLKTDVHVLTLTATPIPRTLQMAMSGLRELSVIQTPPVD 804

Query: 455  RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            R  ++T ++P + +  + E L      G +++++ P+I +  E       E         
Sbjct: 805  RLAVRTYVMPWDGV-VIREALLREHYRGGQSFFVVPRIADLTEVEEFLRNEV-------P 856

Query: 515  TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                 + HG+MS  D E  M +F +    +L++TT++E G+D+  A+ +II  A+ FGLA
Sbjct: 857  EVKPIVAHGQMSATDVEERMSAFYDKRYDVLLSTTIVESGLDIPSANTLIIHRADRFGLA 916

Query: 575  QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
            QL+QLRGRVGR +  +   +       ++  +  RL VL + +    GF +A  DL  R 
Sbjct: 917  QLYQLRGRVGRSKTRAYAYMTTPANRIITDTAEKRLKVLSDLDTLGAGFQLASHDLDIRG 976

Query: 630  EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             G ++G +QSG         EL+ S+LE A  DAK 
Sbjct: 977  AGNLVGDEQSGHI--KEVGFELYQSMLEDAILDAKA 1010


>gi|91205666|ref|YP_538021.1| transcription-repair coupling factor [Rickettsia bellii RML369-C]
 gi|123388111|sp|Q1RI82|MFD_RICBR RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|91069210|gb|ABE04932.1| Transcription-repair coupling factor [Rickettsia bellii RML369-C]
          Length = 1120

 Score =  316 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 134/446 (30%), Positives = 226/446 (50%), Gaps = 24/446 (5%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
           +  + R+    L   QIA      + K      I  + +   K     PF+ T+ Q +AI
Sbjct: 531 AKLKNRIKEIALHLMQIA-----AKRKLNTTAAIEFDLEEYDKFCAKFPFTETEDQLNAI 585

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIMAPIGILAQQH 337
            DI +D+S    M R++ GDVG GKT VA+ A         E   Q  ++ P  IL  QH
Sbjct: 586 NDIREDLSNGMLMDRLICGDVGFGKTEVAMRAAFMVAKSLNENSPQVAVVVPTTILCSQH 645

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           +    +  +++ + ++ ++  +     +     +  G+ +IIIGTH+L     ++  L L
Sbjct: 646 FARFTERFKDSDLNIKQLSSVVSSKEAKIVRSELESGKINIIIGTHSLLHKVTKFCNLKL 705

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+  FGV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  
Sbjct: 706 LIIDEEQHFGVGQKEFLKSLKSSTHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLE 765

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           ++T ++P + +  + + L      G K++++ P+I + ++   +        +    +  
Sbjct: 766 VRTSVMPFDPV-IIRDALLHEHFRGGKSFFVVPRINDIEDIEKQ-----LKQIVPELSYK 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A  HG+MS    + +M  F  G   +LI+TT+IE GID+ DA+ +II  A+  GL+QL+
Sbjct: 820 VA--HGKMSPNKIDEIMSEFYAGKFDILISTTIIESGIDIQDANTMIIHKADMLGLSQLY 877

Query: 578 QLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGE 632
           QLRGR+GRG+      L    H  ++ +S  RL +++N+     GF IA  D+  R  G 
Sbjct: 878 QLRGRIGRGKMRGYAYLTLPSHKKMTPHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGN 937

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEI 658
           ++G +QSG         EL+  +LE 
Sbjct: 938 LIGEEQSGQI--REVGTELYQEMLEE 961


>gi|85705340|ref|ZP_01036439.1| transcription-repair coupling factor [Roseovarius sp. 217]
 gi|85670213|gb|EAQ25075.1| transcription-repair coupling factor [Roseovarius sp. 217]
          Length = 1150

 Score =  316 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 144/450 (32%), Positives = 232/450 (51%), Gaps = 17/450 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + + A  +    ++A  L+R   +        I  E    +      P+  T
Sbjct: 538 DRLGGGAWQAKKARLKERIREMADRLIRVAAERALRRAPVIEPEHHAWEAFAARFPYQET 597

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI+D+L D+   + M R++ GDVG GKT VA+ A  AA   G Q  ++AP  +LA
Sbjct: 598 DDQLHAIEDVLSDLGSGSPMDRLICGDVGFGKTEVAMRAAFAAAMTGLQVAVIAPTTLLA 657

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QHY+      +   + V  ++  +      K  + ++ G+A I++GTHAL    I++  
Sbjct: 658 RQHYQEFASRFRGFPVNVRPLSRFVSAGDAAKTRDAMSRGEADIVVGTHALLAKGIKFKN 717

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+ RFGV  + +L Q  +  HVL +TATPIPRTL L+  G  D+S I   P  
Sbjct: 718 LGLLIIDEEQRFGVAHKERLKQLRSDVHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVD 777

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  I+T +   + +  V E L      G +++++ P+I +  E       +         
Sbjct: 778 RLAIRTYVSEFDSV-TVREALLREHYRGGQSFYVVPRISDLPEIEDFLKTQV-------P 829

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             +  I HG+M+  + +  M++F +G   +L+ATT++E G+D+  A+ +II  A+ FGL+
Sbjct: 830 EVTYVIAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIIHRADMFGLS 889

Query: 575 QLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
           QL+Q+RGRVGR +  +   L   P  PL+  +  RL VL + +    GF +A +DL  R 
Sbjct: 890 QLYQIRGRVGRSKTRAYAYLTTKPRAPLTPGAEKRLRVLGSLDTLGAGFTLASQDLDIRG 949

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            G +LG +QSG  +      EL+ S+LE A
Sbjct: 950 AGNLLGEEQSGQMRD--VGYELYQSMLEEA 977


>gi|183221209|ref|YP_001839205.1| transcription-repair coupling factor [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911300|ref|YP_001962855.1| transcription-repair coupling factor [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775976|gb|ABZ94277.1| Transcription-repair coupling factor [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779631|gb|ABZ97929.1| Transcription-repair coupling factor (TRCF; ATP-dependent helicase
           Mfd) [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 1140

 Score =  316 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 123/451 (27%), Positives = 228/451 (50%), Gaps = 19/451 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIAL--LLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D    +  ++     +    ++A   +L+     K  G     +    ++      F  T
Sbjct: 543 DTLGKNSWKKAKERVQESVDKLAEELVLLYSNRLKLNGFAFPPDTIWQEEFEAAFEFEET 602

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q SAI+ +  D+     M R++ GDVG GKT VA+ A    + AG Q +++ P  IL+
Sbjct: 603 PDQISAIEAVKLDLESSRPMDRLVCGDVGYGKTEVAIRAAFKVIMAGKQVMLLTPTTILS 662

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            QH+   K+  +N  I +  ++     A  R+ L+    G+  ++IGTHA+    ++   
Sbjct: 663 LQHFNTFKQRYENYPIKIAFVSRFRSPAEIREDLKNFTEGKIDMLIGTHAILSSKVKPKN 722

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+I+DE+ +FGV  +  + +      VL +TATPIPRTL +   G  ++S I+  P  
Sbjct: 723 LGLLIIDEEQKFGVTHKESIKKFKNLVDVLTLTATPIPRTLHMALTGIRELSIISTAPKN 782

Query: 455 RKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
           R+ ++T ++  +  D +I E ++  +  G + +++  ++E  +E           SL   
Sbjct: 783 RQSVETYVLEED--DTLIQEAIRKEIERGGQVFYLYNRVESIEEEASY-----VRSLVPE 835

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              S+ I+HG++++ + E  +  F      +L+ TT+IE GID+ + + +I++ A+ FGL
Sbjct: 836 V--SVGILHGQLTEDEIEETLVEFYERKYDILVTTTIIESGIDMPNVNTLIVKKADMFGL 893

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL---KNTEDGFLIAEEDLKQR 628
           +QL+Q+RGRVGR +  +   + Y     +++ +  RL+ +   +    GF +A  DL+ R
Sbjct: 894 SQLYQIRGRVGRSDRKAYAYMFYPSKKLMTELAEKRLNTIFEYQELGSGFKVAMRDLEIR 953

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G +LG +QSG    +    +L+  +LE +
Sbjct: 954 GAGNLLGKEQSG--DIMEVGFDLYVKMLEES 982


>gi|256833153|ref|YP_003161880.1| transcription-repair coupling factor [Jonesia denitrificans DSM
            20603]
 gi|256686684|gb|ACV09577.1| transcription-repair coupling factor [Jonesia denitrificans DSM
            20603]
          Length = 1216

 Score =  316 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 131/451 (29%), Positives = 225/451 (49%), Gaps = 17/451 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W     +     + +AG++  L          G   + +    +++     +  T  Q 
Sbjct: 613  DWQKTKAKARKAIKQIAGELIRLY--SARMATQGFAYSPDTPWQRELEDAFAYIETPDQL 670

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  I+ P  +L QQHY
Sbjct: 671  ATIDEVKADMEKMIPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAILVPTTLLVQQHY 730

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V+ ++        ++ +  I+ G   ++IGTH L   SI +  L LV
Sbjct: 731  DTFSERYAGFPVTVKALSRFQSDKESQEVISGISEGTVDVVIGTHRLLSGSIHFKDLGLV 790

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ +  L Q  T   VL M+ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 791  VIDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPV 850

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +VI  ++  L    + +++  ++E  +     S   R   L     + +
Sbjct: 851  LTYVGGYDD-KQVIAAVRRELLREGQVFYVHNKVETIE-----STAARIMDLVPE--ARV 902

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HGRM++ + E V+  F      +LI+TT+IE G+DV +A+ +I+E ++  GL+QLHQ
Sbjct: 903  RVAHGRMNEHELEQVILDFWEKRFDVLISTTIIETGLDVSNANTLIVERSDVMGLSQLHQ 962

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +     + P  PL++ ++ RL  +        G  +A +DL+ R  G +
Sbjct: 963  LRGRVGRGRERAYAYFFFPPEKPLTETAHERLQTIAANTELGSGMQVAMKDLEIRGAGNL 1022

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            LG +QSG         +L+  ++  A  D +
Sbjct: 1023 LGGEQSGHI--AGVGFDLYMRMVGEAVADFR 1051


>gi|297200238|ref|ZP_06917635.1| transcription-repair coupling factor [Streptomyces sviceus ATCC
            29083]
 gi|197717008|gb|EDY61042.1| transcription-repair coupling factor [Streptomyces sviceus ATCC
            29083]
          Length = 1190

 Score =  316 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 137/488 (28%), Positives = 235/488 (48%), Gaps = 22/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 589  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHTFGPDTPWQRELEDAFPYAETPDQL 646

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 647  TTIAEVKEDMEKSVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 706

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      ++V+ ++        +  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 707  GTFSERYSQFPVVVKALSRFQTDTEAKATLEGLREGSVDVVIGTHRLFSSETKFKDLGLV 766

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 767  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 826

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 827  LTFVGPYEE-KQIGAAIRRELLREGQVFYIHNRVESID-----RAASRLREIVPE--ARI 878

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 879  ATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 938

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 939  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 998

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA----RKDAKHILTQDPDLT-SVRGQSIRILLYLY 688
            LG +QSG         +L+  ++  A    R   +  + ++P L   +       + + Y
Sbjct: 999  LGGEQSGHI--AGVGFDLYVRMVGEAVADYRASLEGGVEEEPPLEVKIELPVDAHVPHDY 1056

Query: 689  QYNEAFQF 696
               E  + 
Sbjct: 1057 APGERLRL 1064


>gi|297157723|gb|ADI07435.1| transcription-repair coupling factor [Streptomyces bingchenggensis
            BCW-1]
          Length = 1200

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 141/492 (28%), Positives = 237/492 (48%), Gaps = 29/492 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 575  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGADTPWQRELEDAFPYAETPDQL 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQHY
Sbjct: 633  TTIGEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHY 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      ++V+ ++        R  LE +  G   I+IGTH LF    ++  L LV
Sbjct: 693  GTFTERYGQFPVVVKALSRFQTDTEARAVLEGLRDGAVDIVIGTHRLFSSETKFKDLGLV 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 753  VVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 813  LTFVGPYEER-QIGAAIRRELLREGQVFYIHNRVESID-----RAAARLREIVPE--ARI 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 865  ATAHGQMSENVLEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 924

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 925  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 984

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ--DPDLTSVRGQSIRILL------ 685
            LG +QSG         +L+  ++  A  D +  L    +P+   +    ++I L      
Sbjct: 985  LGGEQSGHI--AGVGFDLYVRMVGEAVADYRASLEAGGEPEEAPLE---VKIELPVDAHV 1039

Query: 686  -YLYQYNEAFQF 696
             + Y   E  + 
Sbjct: 1040 PHDYAPGERLRL 1051


>gi|302534880|ref|ZP_07287222.1| transcription-repair coupling factor [Streptomyces sp. C]
 gi|302443775|gb|EFL15591.1| transcription-repair coupling factor [Streptomyces sp. C]
          Length = 1179

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 139/490 (28%), Positives = 236/490 (48%), Gaps = 25/490 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 577  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHTFGPDTPWQRELEDAFPYAETPDQL 634

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 635  TTIAEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 694

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V+ ++        +  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 695  GTFSERYSQFPVNVKALSRFQTDTESKATLEGLKEGSVDVVIGTHRLFSQETKFKDLGLV 754

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 755  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 814

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
             T + P     ++   ++  L    + ++I  ++E        S+      L E    + 
Sbjct: 815  LTFVGPYEE-KQIGAAIRRELLREGQCFYIHNRVE--------SIDRAAAKLREIVPEAR 865

Query: 518  IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            IA  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLH
Sbjct: 866  IATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLH 925

Query: 578  QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
            QLRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G 
Sbjct: 926  QLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGN 985

Query: 633  ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL-----TQDPDLT-SVRGQSIRILLY 686
            +LG +QSG         +L+  ++  A  D +  +      ++P L   +       + +
Sbjct: 986  LLGGEQSGHI--AGVGFDLYIRMVGEAVADYRAAVEGGGAEEEPPLEVKIELPVDAHVPH 1043

Query: 687  LYQYNEAFQF 696
             Y   E  + 
Sbjct: 1044 DYAPGERLRL 1053


>gi|145346965|ref|XP_001417951.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578179|gb|ABO96244.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 754

 Score =  316 bits (810), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 151/486 (31%), Positives = 244/486 (50%), Gaps = 18/486 (3%)

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPA--RERLAYDELLAGQIALLLMRKQFKKEIGIP 254
           +       +   +  P K       S    RER     +    +  +++  Q  + +  P
Sbjct: 122 RRLLYRFCSPGGLVKPPKLNKLNDKSTWDLRERKTEATIRRLVVNQMVVYLQRLQCVREP 181

Query: 255 IN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
               + + A++   + PF+ T  Q SAI++I +D+ Q   M R++ GDVG GKT VA+ A
Sbjct: 182 YPLPDPERAKQFDASFPFTLTPDQTSAIQEITEDLQQDAPMDRLVIGDVGFGKTEVAMRA 241

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           M     +GG   +MAP  +LA+QH   +    +   I VE++T ++  A +    +    
Sbjct: 242 MFHVASSGGGVFMMAPTTVLAKQHAANLAVRFRPLGINVELVTRHIQAAKQNTIFDDFRD 301

Query: 374 GQAHIIIGTHALFQDSIQ-YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           G+  II+GTH L     + Y +L L+++DE+ RFGV+ + +++       VL ++ATPIP
Sbjct: 302 GKVQIIVGTHKLVNLEQEYYKQLRLLVIDEEQRFGVKHKDQISALKAEVDVLTLSATPIP 361

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL +   G  D S +   P  R+PI TV+ P N  D++ + ++  +S   + Y+I P+I
Sbjct: 362 RTLHMAMSGFRDASLVQTPPPERRPINTVLAPQND-DDIRKAIEYEISRNGQIYYIVPRI 420

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  R   +R   L  +    I   HG+M     +  M+SF NG+  +LIATT++E
Sbjct: 421 -----NMMRDACDRLLRLFPNL--QIMTAHGQMDGEAIDDAMESFSNGSADVLIATTIVE 473

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLS 609
            G+D+ + + IIIEN + FGLA L+QLRGRVGR    +   + Y      L+  +  RL+
Sbjct: 474 SGLDIPNCNTIIIENVQFFGLASLYQLRGRVGRAGRQAYAYMFYSADESELTTGAQERLA 533

Query: 610 VLKN---TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            L+      +GF ++E D+  R  G + G KQSG    + A   L     ++ R D   I
Sbjct: 534 ALEECCGLGEGFRLSERDMGIRGVGTMFGEKQSGDVDSVGADLYLELLYKQLQRIDNLRI 593

Query: 667 LTQDPD 672
            T D D
Sbjct: 594 KTIDAD 599


>gi|315656036|ref|ZP_07908934.1| transcription-repair coupling factor [Mobiluncus curtisii ATCC
           51333]
 gi|315490100|gb|EFU79727.1| transcription-repair coupling factor [Mobiluncus curtisii ATCC
           51333]
          Length = 1165

 Score =  316 bits (810), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 129/439 (29%), Positives = 215/439 (48%), Gaps = 17/439 (3%)

Query: 219 EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +W    ++ R A  E+    + L  +R+  K       + +    +++  +  F  T  Q
Sbjct: 566 DWAKTKSKARKAVKEIARELVRLYAIRQASKGH---AFSPDTPWQRELEDSFEFVETPDQ 622

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++  DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  I+AP  +L  QH
Sbjct: 623 LTVIDEVKHDMEQTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAILAPTTLLVSQH 682

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E          + V  ++         +    +  G   ++IGTHAL   ++++  L L
Sbjct: 683 TETFTSRFAGFPVTVAALSRFTTAKEAAQIKAGLKDGSIEVVIGTHALLSGNVRFKDLGL 742

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           V++DE+ RFGV+ +  L        VL M+ATPIPRTL +   G   +S +T  P  R P
Sbjct: 743 VVIDEEQRFGVEHKEALKALRADVDVLTMSATPIPRTLEMAITGIRGMSTLTTPPEDRHP 802

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + T +   +   +V   ++  L    + +++  +++         +      L     + 
Sbjct: 803 VLTYVGAYSD-KQVAAAIRRELLRDGQVFFVHNRVQSIN-----RIAAHLAELVPE--AR 854

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + + HG+MS+   ESVM  F N    +L++TT++E G+DV +A+ II++ A+ FGL+QLH
Sbjct: 855 VRVGHGQMSEKQLESVMVDFWNQEFDVLVSTTIVENGLDVTNANTIIVDRADRFGLSQLH 914

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGRVGRG E      LY P   +++ ++ RL  +        G  IA +DL+ R  G 
Sbjct: 915 QLRGRVGRGRERGYAYFLYPPGTTMNETAFERLKTIGTNTGLGSGMAIATKDLEIRGAGN 974

Query: 633 ILGIKQSGMPKFLIAQPEL 651
           +LG +QSG    +     +
Sbjct: 975 LLGGEQSGHIAGVGFDLYV 993


>gi|188996867|ref|YP_001931118.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931934|gb|ACD66564.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 938

 Score =  316 bits (810), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 134/447 (29%), Positives = 232/447 (51%), Gaps = 17/447 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++     + +A  +  +  ++Q       P+  + ++  K  R  PF  T  Q  
Sbjct: 361 WRNLKKKVKESLKNIAKNLLEIYSKRQNIYRP--PLKTDDELISKFEREFPFVETPDQIK 418

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIKDI  D  +   M R++ GDVG GKT VA+  +  +V  G QA+++ P  +LA QHY+
Sbjct: 419 AIKDIKSDFLKPKPMERLICGDVGFGKTEVAIRGIFISVINGYQALLLVPTTVLAYQHYK 478

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            +K+  +   IIV+ ++    +      ++    G+  +++ TH +   ++ + KL L++
Sbjct: 479 KLKERLEPYGIIVKNLSRLKSKKENDNTIKAFEEGKIDVLVATHKILHTNLSFNKLELLV 538

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV+ + K+ Q   +   L +TATPIPRTL +   G  DIS +   P GR  IK
Sbjct: 539 IDEEHRFGVKAKEKIRQIRESVDTLYLTATPIPRTLNMALSGLKDISVLNTPPEGRYEIK 598

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSI 518
           T +   +  + + + ++  +    + +++  +IE  K        E  + L      + +
Sbjct: 599 TYVSNFDE-ELIKKAIEFEIDRNGQVFYLHNRIETIK--------ETADFLKNLVKKAKV 649

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG+M   + E  +  F  G   +LI+T++IE GID+  A+ +I++ A+ FGLAQL+ 
Sbjct: 650 DFIHGKMKPSEIEKKIIDFLEGKTNVLISTSIIETGIDIPTANTLIVDRADLFGLAQLYH 709

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
           LRGRVGRG   + C L+    ++K++  R+  L        G  ++ ED++ R  G ILG
Sbjct: 710 LRGRVGRGNIQAYCYLIVPKEITKDAKRRIDTLLKLTRPGSGLKVSIEDMQIRGPGNILG 769

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKD 662
           ++QSG  K L      +  LL+ A  +
Sbjct: 770 VEQSGFIKSLGFDY--YVKLLKEAINE 794


>gi|237803178|ref|YP_002888372.1| transcription-repair coupling factor [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231274412|emb|CAX11207.1| transcription-repair coupling factor [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 1079

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 142/459 (30%), Positives = 218/459 (47%), Gaps = 16/459 (3%)

Query: 213 RKAKDFEWTSPARER-LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
                       R R L+   ++     L+ M  Q            G+   K   + P+
Sbjct: 496 PDLHHLNGAKWRRSRELSEKSVILYAEKLIQMEAQRSTANSFIYPPHGEEVIKFAESFPY 555

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-GQAVIMAPI 330
             T  Q  AI  I  DM     M R++ GD G GKT + + A   AV  G  Q ++M P 
Sbjct: 556 EETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAVCDGHKQVIVMVPT 615

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA QH+E   +      I + +++        +K LE IA G+  I+IGTH +   +I
Sbjct: 616 TILANQHFETFSQRMAGLPITIGLLSRFSQGKTMKKTLEDIAQGRIDILIGTHKVINKAI 675

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +++   L+I+DE+ RFGV+ +  L ++      L ++ATPIPRTL L+  G  D+S IT 
Sbjct: 676 EFHNPGLLIIDEEQRFGVKAKDSLKERFPTIDCLTVSATPIPRTLYLSLSGARDLSLITM 735

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R P+ T ++  +  + +   ++  L  G + Y I  +IE         + E   +L
Sbjct: 736 PPLDRLPVSTFVMEHSE-ETLSAAIRHELLRGGQVYVIHNRIESIF-----RLGETIRTL 789

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                + I + HG+M   +  S+   FK     +LIAT +IE GID+ +A+ I+I++A+ 
Sbjct: 790 IPE--ARIGVAHGQMHANELASIFYKFKTQQTNVLIATALIENGIDIPNANTILIDHADK 847

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVL--KNTEDGFLIAEEDLK 626
           FG+A L+Q++GRVGR  + + C  L      LS  +  RL  L  +    G  IA  DL+
Sbjct: 848 FGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPTSKRLEALNKQEYGGGMKIALHDLE 907

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            R  G ILG  QSG    +     L+  LL+ A    KH
Sbjct: 908 IRGTGNILGTDQSGHISAVGFN--LYCKLLKKAVAALKH 944


>gi|238650718|ref|YP_002916571.1| transcription-repair coupling factor [Rickettsia peacockii str.
           Rustic]
 gi|238624816|gb|ACR47522.1| transcription-repair coupling factor [Rickettsia peacockii str.
           Rustic]
          Length = 1122

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 134/466 (28%), Positives = 238/466 (51%), Gaps = 26/466 (5%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
           +  ++R+    L   QIA      + K      +  + +   K   N PFS T+ Q  AI
Sbjct: 533 AKLKKRIKEIALHLIQIA-----AKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAI 587

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIMAPIGILAQQH 337
            DI +D+     M R++ GDVG GKT VA+ A+        E   Q  ++ P  IL  QH
Sbjct: 588 NDIKEDLRNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQH 647

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           +    +  +   + ++ ++  +     +     +  G+ +IIIGTH+L   +I+++ L L
Sbjct: 648 FSRFIERFKGFGLNIKQLSSVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKL 707

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+  FGV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R+ 
Sbjct: 708 LIIDEEQHFGVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRRE 767

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + T ++P + +  + + L      G +++++ P+I++ ++   +        +    +  
Sbjct: 768 VHTSVMPFDPV-IIRDALLREHFRGGRSFYVVPRIKDIEDIAKQ-----LKQIVPELSYK 821

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  +G+M+    + VM  F  G   +L++TT+IE GID+ +A+ +II NA+  GL+QL+
Sbjct: 822 IA--YGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLY 879

Query: 578 QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGE 632
           QLRGR+GRG+      L    +  ++ +S   L +++N+     GF IA  D+  R  G 
Sbjct: 880 QLRGRIGRGKMRGYAYLTVASNKKMTSHSLRCLEIIQNSCALGSGFTIANRDMDLRGFGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH--ILTQDPDLTSV 676
           ++G +QSG         EL+  +LE      K   I+++ P + ++
Sbjct: 940 LIGEEQSGQI--KEVGTELYQEMLEEQIAIFKDEPIVSEQPFIPTI 983


>gi|165933497|ref|YP_001650286.1| transcription-repair coupling factor [Rickettsia rickettsii str.
           Iowa]
 gi|13235395|emb|CAC33672.1| Mfd protein [Rickettsia rickettsii]
 gi|165908584|gb|ABY72880.1| transcription-repair coupling factor [Rickettsia rickettsii str.
           Iowa]
          Length = 1122

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 135/466 (28%), Positives = 237/466 (50%), Gaps = 26/466 (5%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
           +  ++R+    L   QIA      + K      +  + +   K   N PFS T+ Q  AI
Sbjct: 533 AKLKKRIKEIALHLIQIA-----AKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAI 587

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIMAPIGILAQQH 337
            DI +D+     M R++ GDVG GKT VA+ A+        E   Q  ++ P  IL  QH
Sbjct: 588 NDIKEDLRNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQH 647

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           +    +  +   + ++ ++  +     +     +  G+ +IIIGTH+L   +I+++ L L
Sbjct: 648 FSRFIERFKGFGLNIKQLSSVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKL 707

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+  FGV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  
Sbjct: 708 LIIDEEQHFGVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLE 767

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + T ++P + +  + + L      G +++++ P+I++ ++   +        +    +  
Sbjct: 768 VHTSVMPFDPV-IIRDALLREHFRGGRSFYVVPRIKDIEDIAKQ-----LKQIVPELSYK 821

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  +G+M+    + VM  F  G   +L++TT+IE GID+ +A+ +II NA+  GL+QL+
Sbjct: 822 IA--YGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLY 879

Query: 578 QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGE 632
           QLRGR+GRG+      L    H  ++ +S   L +++N+     GF IA  D+  R  G 
Sbjct: 880 QLRGRIGRGKMRGYVYLTVASHKKMTSHSLRCLEIIQNSCALGSGFTIASRDMDLRGFGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH--ILTQDPDLTSV 676
           ++G +QSG         EL+  +LE      K   I+++ P + ++
Sbjct: 940 LIGEEQSGQI--KEVGTELYQEMLEEQIAIFKDEPIVSEQPFIPTI 983


>gi|157828769|ref|YP_001495011.1| transcription-repair coupling factor [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|157801250|gb|ABV76503.1| transcription-repair coupling factor [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 1122

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 135/466 (28%), Positives = 237/466 (50%), Gaps = 26/466 (5%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
           +  ++R+    L   QIA      + K      +  + +   K   N PFS T+ Q  AI
Sbjct: 533 AKLKKRIKEIALHLIQIA-----AKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAI 587

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIMAPIGILAQQH 337
            DI +D+     M R++ GDVG GKT VA+ A+        E   Q  ++ P  IL  QH
Sbjct: 588 NDIKEDLRNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQH 647

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           +    +  +   + ++ ++  +     +     +  G+ +IIIGTH+L   +I+++ L L
Sbjct: 648 FSRFIERFKGFGLNIKQLSSVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKL 707

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+  FGV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  
Sbjct: 708 LIIDEEQHFGVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLE 767

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + T ++P + +  + + L      G +++++ P+I++ ++   +        +    +  
Sbjct: 768 VHTSVMPFDPV-IIRDALLREHFRGGRSFYVVPRIKDIEDIAKQ-----LKQIVPELSYK 821

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IA  +G+M+    + VM  F  G   +L++TT+IE GID+ +A+ +II NA+  GL+QL+
Sbjct: 822 IA--YGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLY 879

Query: 578 QLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGE 632
           QLRGR+GRG+      L    H  ++ +S   L +++N+     GF IA  D+  R  G 
Sbjct: 880 QLRGRIGRGKMRGYVYLTVASHKKMTSHSLRCLEIIQNSCALGSGFTIASRDMDLRGFGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH--ILTQDPDLTSV 676
           ++G +QSG         EL+  +LE      K   I+++ P + ++
Sbjct: 940 LIGEEQSGQI--KEVGTELYQEMLEEQIAIFKDEPIVSEQPFIPTI 983


>gi|298345580|ref|YP_003718267.1| putative transcription-repair coupling factor [Mobiluncus curtisii
           ATCC 43063]
 gi|298235641|gb|ADI66773.1| possible transcription-repair coupling factor [Mobiluncus curtisii
           ATCC 43063]
          Length = 1165

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 129/439 (29%), Positives = 215/439 (48%), Gaps = 17/439 (3%)

Query: 219 EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +W    ++ R A  E+    + L  +R+  K       + +    +++  +  F  T  Q
Sbjct: 566 DWAKTKSKARKAVKEIARELVRLYAIRQASKGH---AFSPDTPWQRELEDSFEFVETPDQ 622

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++  DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  I+AP  +L  QH
Sbjct: 623 LTVIDEVKHDMEQTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAILAPTTLLVSQH 682

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E          + V  ++         +    +  G   ++IGTHAL   ++++  L L
Sbjct: 683 TETFTSRFAGFPVTVAALSRFTTAKEAAQIKAGLKDGSIEVVIGTHALLSGNVRFKDLGL 742

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           V++DE+ RFGV+ +  L        VL M+ATPIPRTL +   G   +S +T  P  R P
Sbjct: 743 VVIDEEQRFGVEHKEALKALRADVDVLTMSATPIPRTLEMAITGIRGMSTLTTPPEDRHP 802

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + T +   +   +V   ++  L    + +++  +++         +      L     + 
Sbjct: 803 VLTYVGAYSD-KQVAAAIRRELLRDGQVFFVHNRVQSIN-----RIAAHLAELVPE--AR 854

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + + HG+MS+   ESVM  F N    +L++TT++E G+DV +A+ II++ A+ FGL+QLH
Sbjct: 855 VRVGHGQMSEKQLESVMVDFWNQEFDVLVSTTIVENGLDVTNANTIIVDRADRFGLSQLH 914

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGRVGRG E      LY P   +++ ++ RL  +        G  IA +DL+ R  G 
Sbjct: 915 QLRGRVGRGRERGYAYFLYPPGTTMNETAFERLKTIGTNTGLGSGMAIATKDLEIRGAGN 974

Query: 633 ILGIKQSGMPKFLIAQPEL 651
           +LG +QSG    +     +
Sbjct: 975 LLGGEQSGHIAGVGFDLYV 993


>gi|304391135|ref|ZP_07373087.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326018|gb|EFL93264.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 1165

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 129/439 (29%), Positives = 215/439 (48%), Gaps = 17/439 (3%)

Query: 219 EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +W    ++ R A  E+    + L  +R+  K       + +    +++  +  F  T  Q
Sbjct: 566 DWAKTKSKARKAVKEIARELVRLYAIRQASKGH---AFSPDTPWQRELEDSFEFVETPDQ 622

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++  DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  I+AP  +L  QH
Sbjct: 623 LTVIDEVKHDMEQTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAILAPTTLLVSQH 682

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E          + V  ++         +    +  G   ++IGTHAL   ++++  L L
Sbjct: 683 TETFTSRFAGFPVTVAALSRFTTAKEAAQIKAGLKDGSIEVVIGTHALLSGNVRFKDLGL 742

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           V++DE+ RFGV+ +  L        VL M+ATPIPRTL +   G   +S +T  P  R P
Sbjct: 743 VVIDEEQRFGVEHKEALKALRADVDVLTMSATPIPRTLEMAITGIRGMSTLTTPPEDRHP 802

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + T +   +   +V   ++  L    + +++  +++         +      L     + 
Sbjct: 803 VLTYVGAYSD-KQVAAAIRRELLRDGQVFFVHNRVQSIN-----RIAAHLAELVPE--AR 854

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + + HG+MS+   ESVM  F N    +L++TT++E G+DV +A+ II++ A+ FGL+QLH
Sbjct: 855 VRVGHGQMSEKQLESVMVDFWNQEFDVLVSTTIVENGLDVTNANTIIVDRADRFGLSQLH 914

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGRVGRG E      LY P   +++ ++ RL  +        G  IA +DL+ R  G 
Sbjct: 915 QLRGRVGRGRERGYAYFLYPPGTTMNETAFERLKTIGTNTGLGSGMAIATKDLEIRGAGN 974

Query: 633 ILGIKQSGMPKFLIAQPEL 651
           +LG +QSG    +     +
Sbjct: 975 LLGGEQSGHIAGVGFDLYV 993


>gi|157964740|ref|YP_001499564.1| transcription-repair coupling factor [Rickettsia massiliae MTU5]
 gi|157844516|gb|ABV85017.1| Transcription-repair coupling factor [Rickettsia massiliae MTU5]
          Length = 1134

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 132/462 (28%), Positives = 237/462 (51%), Gaps = 21/462 (4%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +    + +    + L+ +  + K      +  + +   K   N PFS T+ Q +AI DI 
Sbjct: 544 KAKLKNRIKEIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLTAINDIK 603

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIMAPIGILAQQHYEFI 341
           +D+     M R++ GDVG GKT VA+ A+        E   Q  ++ P  IL  QH+   
Sbjct: 604 EDLRNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRF 663

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            +  +   + ++ ++  +     +     +  G+ +IIIGTH+L   +I+++ L L+I+D
Sbjct: 664 IERFKGFGLNIKQLSRVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKLLIID 723

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+  FGV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  ++T 
Sbjct: 724 EEQHFGVGQKELLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTS 783

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           ++P + +  + + L      G +++++ P+I++ ++   +        +    +  IA  
Sbjct: 784 VMPFDPV-IIRDALLREHFRGGRSFYVVPRIKDIEDIEKQ-----LKQIVPELSYKIA-- 835

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M+    + VM  F  G   +L++TT+IE GID+ +A+ +II  A+  GL+QL+QLRG
Sbjct: 836 HGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHKADMLGLSQLYQLRG 895

Query: 582 RVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636
           R+GRG+      L    H  ++ +S  RL +++N+     GF IA  D+  R  G ++G 
Sbjct: 896 RIGRGKMRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGE 955

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKH--ILTQDPDLTSV 676
           +QSG         EL+  +LE      K   I+++ P + ++
Sbjct: 956 EQSGQI--KEVGTELYQEMLEEQIAIFKDAPIVSEQPFIPTI 995


>gi|315656087|ref|ZP_07908978.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315493089|gb|EFU82689.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 1165

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 129/439 (29%), Positives = 215/439 (48%), Gaps = 17/439 (3%)

Query: 219 EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           +W    ++ R A  E+    + L  +R+  K       + +    +++  +  F  T  Q
Sbjct: 566 DWAKTKSKARKAVKEIARELVRLYAIRQASKGH---AFSPDTPWQRELEDSFEFVETPDQ 622

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
            + I ++  DM Q   M R++ GDVG GKT +A+ A   AV+ G Q  I+AP  +L  QH
Sbjct: 623 LTVIDEVKHDMEQTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAILAPTTLLVSQH 682

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E          + V  ++         +    +  G   ++IGTHAL   ++++  L L
Sbjct: 683 TETFTSRFAGFPVTVAALSRFTTAKEAAQIKAGLKDGSIEVVIGTHALLSGNVRFKDLGL 742

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           V++DE+ RFGV+ +  L        VL M+ATPIPRTL +   G   +S +T  P  R P
Sbjct: 743 VVIDEEQRFGVEHKEALKALRADVDVLTMSATPIPRTLEMAITGIRGMSTLTTPPEDRHP 802

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + T +   +   +V   ++  L    + +++  +++         +      L     + 
Sbjct: 803 VLTYVGAYSD-KQVAAAIRRELLRDGQVFFVHNRVQSIN-----RIAAHLAELVPE--AR 854

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + + HG+MS+   ESVM  F N    +L++TT++E G+DV +A+ II++ A+ FGL+QLH
Sbjct: 855 VRVGHGQMSEKQLESVMVDFWNQEFDVLVSTTIVENGLDVTNANTIIVDRADRFGLSQLH 914

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGRVGRG E      LY P   +++ ++ RL  +        G  IA +DL+ R  G 
Sbjct: 915 QLRGRVGRGRERGYAYFLYPPGTTMNETAFERLKTIGTNTGLGSGMAIATKDLEIRGAGN 974

Query: 633 ILGIKQSGMPKFLIAQPEL 651
           +LG +QSG    +     +
Sbjct: 975 LLGGEQSGHIAGVGFDLYV 993


>gi|282852620|ref|ZP_06261962.1| transcription-repair coupling factor [Lactobacillus gasseri 224-1]
 gi|282556362|gb|EFB61982.1| transcription-repair coupling factor [Lactobacillus gasseri 224-1]
          Length = 935

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 198/378 (52%), Gaps = 10/378 (2%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
             EW    +   +  E +A  +  L  +++ +   G   + +  + ++     P+  T  
Sbjct: 561 SAEWAKTKKRVQSKVEDIADDLIELYAKRESE--KGFAFSPDDDLQKEFEDAFPYPETPD 618

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  +I++I  DM     M R+L GDVG GKT VAL A   A+  G Q   +AP  ILAQQ
Sbjct: 619 QLRSIREIKADMESPKPMDRLLVGDVGFGKTEVALRAAFKAIRDGKQVAFLAPTTILAQQ 678

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+E ++   +N  +   +++     A  +  +E + +G+  +++GTH L    +++  L 
Sbjct: 679 HFETMQDRFKNFPVNCALLSRFQTPAEVKAIIEGVKNGKIDMVVGTHRLLSKDVKFKDLG 738

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+IVDE+ RFGV+ + +L +      VL +TATPIPRTL ++ +G  D+S +   P  R 
Sbjct: 739 LLIVDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRY 798

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PI+T ++       V E +   +    + +++  +I++  +        R   L     +
Sbjct: 799 PIQTYVME-EMPSVVREAVLREMKRNGQVFFLHNRIDDIDKVVS-----RLEELIPE--A 850

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I  IHGRMS+   E +M  F      +L+ TT+IE G+D+ + + +I+ENA+H+GL+QL
Sbjct: 851 KIEYIHGRMSENQMEDIMYRFSRNEFDILVTTTIIETGVDMPNVNTMIVENADHYGLSQL 910

Query: 577 HQLRGRVGRGEEISSCIL 594
           +QLRGR+GR   ++    
Sbjct: 911 YQLRGRIGRSARLAYAYF 928


>gi|239930800|ref|ZP_04687753.1| transcriptional-repair coupling factor [Streptomyces ghanaensis ATCC
            14672]
 gi|291439165|ref|ZP_06578555.1| transcriptional-repair coupling factor [Streptomyces ghanaensis ATCC
            14672]
 gi|291342060|gb|EFE69016.1| transcriptional-repair coupling factor [Streptomyces ghanaensis ATCC
            14672]
          Length = 1185

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 136/487 (27%), Positives = 232/487 (47%), Gaps = 19/487 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 583  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGADTPWQRELEDAFPYAETPDQL 640

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 641  TTIAEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 700

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                       + V  ++        +  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 701  GTFGDRYAQFPVTVRALSRFQTDTEAKAVLEGLREGSVDVVIGTHRLFSSETKFKDLGLV 760

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 761  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 820

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 821  LTFVGPYEE-KQIGAAIRRELLREGQVFYIHNRVESID-----RAAARLRDIVPE--ARI 872

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  + FGL+QLHQ
Sbjct: 873  ATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDTFGLSQLHQ 932

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 933  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 992

Query: 634  LGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLT-SVRGQSIRILLYLYQ 689
            LG +QSG      F +    + +++ +  R+     + ++P L   +       + + Y 
Sbjct: 993  LGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGGIEEEPPLEVKIELPVDAHVPHDYA 1052

Query: 690  YNEAFQF 696
              E  + 
Sbjct: 1053 PGERLRL 1059


>gi|225451661|ref|XP_002276313.1| PREDICTED: similar to DEAD/DEAH box helicase, putative [Vitis
           vinifera]
          Length = 823

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 153/457 (33%), Positives = 236/457 (51%), Gaps = 30/457 (6%)

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY----DELLAGQIALLLMRKQFKKEI 251
           + + PS          PR       TS    R        + +   +  L + +  +K  
Sbjct: 198 RYNLPS------ESKRPRTLSKLSDTSIWERRRIKGRVAIQKMVVDLMELYLHRLKQKRP 251

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKTLVA 310
             P +       +      + PT  Q+ A  D+ +D+  ++  M R++ GDVG GKT VA
Sbjct: 252 PYPKSP---GMAEFEAQFSYEPTPDQKQAFIDVEEDLTERETPMDRLICGDVGFGKTEVA 308

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALE 369
           L A+   V AG QA+++AP  +LA+QH++ I +++++   I V +++     A + K L 
Sbjct: 309 LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVITERFSKYPNIKVGLLSRFQTTAEKEKHLR 368

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            I HG   II+GTH+L  + + Y  L L++VDE+ RFGV+Q+ K+    T+  VL ++AT
Sbjct: 369 MIKHGDLDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSAT 428

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L   G  D S I+  P  R PI T +   N+ +++I  +K  L  G + +++ 
Sbjct: 429 PIPRTLYLALTGFRDASLISTPPPERVPIITHLSAYNK-EKIISAIKFELGRGGQIFYVL 487

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P+I        + + E    L   F    IAI HG+      E  MD F  G  K+LI T
Sbjct: 488 PRI--------KGLEEVMEFLECSFPDVEIAIAHGKQYSKQLEETMDRFAQGEIKILICT 539

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYT 606
            ++E G+D+ +A+ III+  + FGLAQL+QLRGRVGR ++ +   L Y     LS  +  
Sbjct: 540 NIVESGLDIQNANTIIIQEVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALE 599

Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           RLS L+   D   GF +AE D+  R  G I G +Q+G
Sbjct: 600 RLSALEECRDLGQGFQLAERDMGIRGFGNIFGEQQTG 636


>gi|256374814|ref|YP_003098474.1| transcription-repair coupling factor [Actinosynnema mirum DSM 43827]
 gi|255919117|gb|ACU34628.1| transcription-repair coupling factor [Actinosynnema mirum DSM 43827]
          Length = 1187

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 138/490 (28%), Positives = 236/490 (48%), Gaps = 25/490 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +     + +A ++  L   +Q     G     +    +++    PF+ T  Q 
Sbjct: 573  DWKNTKAKAKKAVKQIAAELVQLYAARQSA--PGHAFAPDTPWQRELEDAFPFTETVDQM 630

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q V++ P  +LAQQH 
Sbjct: 631  AAIDEVKADMERGVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHL 690

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  +   ++V  ++         +    +A G   ++IGTH L Q  ++Y  L LV
Sbjct: 691  NTFTERMRAFPVVVRGLSRFTDPTEAEQTTTGLAEGDVDVVIGTHRLLQKGLRYKDLGLV 750

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R PI
Sbjct: 751  IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPI 810

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V   ++  L    + +++  ++   +         R   L     + +
Sbjct: 811  LTYVGGYAD-KQVGAAIRRELLRDGQVFYVHNRVSSIE-----KAARRIRELAPE--ARV 862

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M++   E ++  F      +L++TT++E G+D+ +A+ +I+E  +  GL+QLHQ
Sbjct: 863  VTAHGQMNEDKLEKIIQGFWEREYDVLVSTTIVETGLDISNANTLIVERGDLLGLSQLHQ 922

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PLS+ ++ RL+ +    +   G  +A +DL+ R  G I
Sbjct: 923  LRGRVGRGRERGYAYFLYPPESPLSETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGNI 982

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-------Y 686
            LG +QSG         +L+  L+  A +  +     D +L     + +R+ L       +
Sbjct: 983  LGAEQSGHI--AGVGFDLYVRLVGEAVEAFRRSAGADGELEVEPAE-VRVELPVDAHIPH 1039

Query: 687  LYQYNEAFQF 696
             Y   E  + 
Sbjct: 1040 DYVPGERLRL 1049


>gi|302542946|ref|ZP_07295288.1| transcription-repair coupling factor [Streptomyces hygroscopicus ATCC
            53653]
 gi|302460564|gb|EFL23657.1| transcription-repair coupling factor [Streptomyces himastatinicus
            ATCC 53653]
          Length = 1177

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 223/449 (49%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 576  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGADTPWQRELEDAFPYAETPDQL 633

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH 
Sbjct: 634  TTIGEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHM 693

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      ++V+ ++        +  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 694  GTFTERYGQFPVVVKALSRFQTDTEAKAVLEGLRDGSVDVVIGTHRLFSSETKFKNLGLV 753

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 754  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 813

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P  +  ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 814  LTFVGPYEQ-KQIGAAIRRELLREGQVFYIHNRVESID-----RAAARLREIVPE--ARI 865

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 866  ATAHGQMSETALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 925

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 926  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 985

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +QSG         +L+  ++  A  D
Sbjct: 986  LGGEQSGHI--AGVGFDLYVRMVGEAVAD 1012


>gi|324997533|ref|ZP_08118645.1| transcription-repair coupling factor [Pseudonocardia sp. P1]
          Length = 1211

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 124/452 (27%), Positives = 231/452 (51%), Gaps = 17/452 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +A  +  L   +Q     G     +    +++    P++ T  Q 
Sbjct: 596  DWAKTKGRARKAVKDIAAGLVQLYAARQA--SPGHAFGADTPWQRELEDAFPYTETPDQL 653

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            SAI ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 654  SAIDEVKKDMERPVPMDRVISGDVGFGKTEIAVRAAFKAVQDGKQVAVLVPTTLLATQHL 713

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +  +   + V  ++     A  ++ ++++A G   +++GTH L Q ++++  L LV
Sbjct: 714  NTFAERMRQFPVTVRGLSRFTDAAEAKETIDKLAEGTVDVVVGTHRLLQGAVRWKDLGLV 773

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  +T       VL ++ATPIPRTL ++  G  ++S IT  P  R P 
Sbjct: 774  VVDEEQRFGVEHKEHITALRAHVDVLTLSATPIPRTLEMSLAGIREMSAITTPPEDRHPT 833

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   ++  L    + +++  ++    ++  +++ +          + +
Sbjct: 834  LTYVGAYDD-KQVAAAVRRELLRDGQVFYVHNRVSSIDKA-AKNIQDLVPE------ARV 885

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++   E  +++F +    +L+ TT++E G+D+ +A+ +I+E ++  GL+QLHQ
Sbjct: 886  AVAHGQMNEELLERTVNAFWHREFDVLVCTTIVENGLDISNANTLIVERSDTLGLSQLHQ 945

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      L+ P  PL++ ++ RL+ +        G  +A +DL+ R  G I
Sbjct: 946  LRGRVGRGRERGYAYFLFPPEHPLTETAHDRLATIAQHSELGSGAAVAMKDLEIRGAGNI 1005

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            LG +QSG         +L+  L+  A    + 
Sbjct: 1006 LGAEQSGHI--AGVGFDLYIRLVGEAVAAFRK 1035


>gi|157826877|ref|YP_001495941.1| transcription-repair coupling factor [Rickettsia bellii OSU 85-389]
 gi|157802181|gb|ABV78904.1| Transcription-repair coupling factor [Rickettsia bellii OSU 85-389]
          Length = 1120

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 133/446 (29%), Positives = 225/446 (50%), Gaps = 24/446 (5%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
           +  + R+    L   QIA      + K      I  + +   K     PF+ T+ Q +AI
Sbjct: 531 AKLKNRIKEIALHLMQIA-----AKRKLNTTAAIEFDLEEYDKFCAKFPFTETEDQLNAI 585

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIMAPIGILAQQH 337
            DI +D+S    M R++ GDVG GKT VA+ A         E   Q  ++ P  IL  QH
Sbjct: 586 NDIREDLSNGMLMDRLICGDVGFGKTEVAMRASFMVAKSLNENSPQVAVVVPTTILCSQH 645

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           +    +  +++ + ++ ++  +     +     +  G+ +IIIGTH+L     ++  L L
Sbjct: 646 FARFTERFKDSDLNIKQLSSVVSSKEAKIVRSELESGKINIIIGTHSLLHKVTKFCNLKL 705

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+  FGV Q+  L    ++ HVL M+ATPIPRTL ++     ++S I   P  R  
Sbjct: 706 LIIDEEQHFGVGQKEFLKSLKSSTHVLAMSATPIPRTLQMSMTDLKELSIIATPPLNRLE 765

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           ++T ++P + +  + + L      G K++++ P+I + ++   +        +    +  
Sbjct: 766 VRTSVMPFDPV-IIRDALLREHFRGGKSFFVVPRINDIEDIEKQ-----LKQIVPELSYK 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A  HG+MS    + +M  F  G   +LI+TT+IE GID+ DA+ +II  A+  GL+QL+
Sbjct: 820 VA--HGKMSPNKIDEIMSEFYAGKFDILISTTIIESGIDIQDANTMIIHKADMLGLSQLY 877

Query: 578 QLRGRVGRGEEISSCILL--YHPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGE 632
           QLRGR+GRG+      L    H  ++ +S  RL +++N+     GF IA  D+  R  G 
Sbjct: 878 QLRGRIGRGKMRGYAYLTLPSHKKMTPHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGN 937

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEI 658
           ++G +QSG         EL+  +LE 
Sbjct: 938 LIGEEQSGQI--REVGTELYQEMLEE 961


>gi|256372365|ref|YP_003110189.1| transcription-repair coupling factor [Acidimicrobium ferrooxidans DSM
            10331]
 gi|256008949|gb|ACU54516.1| transcription-repair coupling factor [Acidimicrobium ferrooxidans DSM
            10331]
          Length = 1131

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 138/488 (28%), Positives = 235/488 (48%), Gaps = 20/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +A ++ +L  R+         I  +  +  +     P+  T+ QE
Sbjct: 531  DWQRQVHRARRAAQEVAQELVVLYQRRLAATGS--SITPDPVLLSEFAERFPYELTRDQE 588

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I ++L D+++   M R++ GDVG GKT +AL A  A    G Q +++AP  +LA QH 
Sbjct: 589  RTIAEVLADLAKPVPMDRLVCGDVGFGKTEIALRAAFAVASEGRQVLVLAPTTLLAAQHA 648

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E  ++  + T I V +++              +A G+  + I THA    S ++ +L L+
Sbjct: 649  EVFRERFEGTPIRVGMLSRLSTAREAASIRAELASGELDVCIATHAALGASTRFARLGLL 708

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            ++DE+ RFGV+ + +L +      VL+++ATPIPR+L L+ +G  D+S +   P  R PI
Sbjct: 709  VIDEEQRFGVRHKEQLKEAFPGVDVLVLSATPIPRSLELSLVGIRDLSVLRTAPVDRHPI 768

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +    V E ++  L    + +++  ++ + +             L     + +
Sbjct: 769  LTHVGPFD-PAVVTEAIRRELLREGQVFFVHNRVRDIEA-----SARLVADLVPE--ARV 820

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG++     E  M  F +G   +L+ATT++E GID+  A+ +I++ AE  GLAQLHQ
Sbjct: 821  LVAHGQLPPAALERTMAQFWHGEADVLVATTIVENGIDLARANTLIVDRAEQLGLAQLHQ 880

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGR    +   LL      +S  +  RL  +    D   G+ IA  DL+ R  G +
Sbjct: 881  LRGRVGRSGRQAYAYLLTSTTGGISDIALERLRTVAENTDLGAGYRIAMRDLELRGAGTV 940

Query: 634  LGIKQSGMPKFLIAQPELHDSLL--EIARKDAKHILTQDPDLT-SVRGQSIRILLYLYQY 690
            LG++QSG         EL+  L+  E+AR D     T D ++   V   ++    Y+ + 
Sbjct: 941  LGMRQSGHVS--EVGYELYVRLVAEEVARMDGVEEPTPDREVALDVPVSALLAEDYVAEA 998

Query: 691  NEAFQFIR 698
                   R
Sbjct: 999  ETRMDLYR 1006


>gi|312282627|dbj|BAJ34179.1| unnamed protein product [Thellungiella halophila]
          Length = 823

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 162/486 (33%), Positives = 249/486 (51%), Gaps = 32/486 (6%)

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL----AYDELLAGQIALLLMRKQFK 248
           LL + + P      N    PR       TS    R        + +   +  L + +  +
Sbjct: 195 LLYRYNLP------NETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHRLRQ 248

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKT 307
           K    P N    I        P++ T  Q+ A  D+ +D+  ++  M R++ GDVG GKT
Sbjct: 249 KRYPYPKNP---IMADFAAQFPYNATPDQKQAFLDVDKDLTERETPMDRLICGDVGFGKT 305

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRK 366
            VAL A+   V AG QA+++AP  +LA+QHY+ I +      QI V +++    +A + +
Sbjct: 306 EVALRAIFCVVSAGKQAMVLAPTIVLAKQHYDVISERFSLYPQIKVGLLSRFQTKAEKEE 365

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE I +G  +II+GTH+L    + Y  L L++VDE+ RFGV+Q+ K+    T+  VL +
Sbjct: 366 YLEMIKNGDLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTL 425

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL L   G  D S I+  P  R PIKT +    R ++VIE +K  L  G + +
Sbjct: 426 SATPIPRTLYLALTGFRDASLISTPPPERIPIKTHLSSF-RKEKVIEAIKNELDRGGQVF 484

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++ P+I        + + E  N L E F    IA+ HG+      E  M+ F  G  K+L
Sbjct: 485 YVLPRI--------KGLEEVMNFLEEAFPDIDIAMAHGKRYSKQLEETMERFAQGKIKIL 536

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKN 603
           I T ++E G+D+ +A+ III++ + FGLAQL+QLRGRVGR ++ +   L Y     LS  
Sbjct: 537 ICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQ 596

Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +  RLS L+   +   GF +AE D+  R  G I G +Q+G         +L   +L  + 
Sbjct: 597 ALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGN--VGIDLFFEMLFESL 654

Query: 661 KDAKHI 666
              + +
Sbjct: 655 SKVEEL 660


>gi|256389420|ref|YP_003110984.1| transcription-repair coupling factor [Catenulispora acidiphila DSM
            44928]
 gi|256355646|gb|ACU69143.1| transcription-repair coupling factor [Catenulispora acidiphila DSM
            44928]
          Length = 1182

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 227/449 (50%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +AG +  L          G     +    +++    P+  T  Q 
Sbjct: 582  DWQKAKSRARKAVKQIAGDLVKLY--SARMAAPGHAFAADTPWQRELEDAFPYVETPDQL 639

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 640  ACIDEVKSDMEKPVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 699

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + ++ ++         + L  +A G   ++IGTH L  +S+++ +L LV
Sbjct: 700  STFAERYAQFPVTLKGLSRFQTDKEAAEVLRGVADGSVDVVIGTHRLLANSVKFKRLGLV 759

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L Q      VL M+ATPIPRTL +   G  ++S I   P  R P+
Sbjct: 760  IVDEEQRFGVEHKEQLKQARANVDVLTMSATPIPRTLEMAVTGIREMSTIQTPPEERHPV 819

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    +A++I  ++E            R  +L     + I
Sbjct: 820  LTFVGPYEER-QISAAIRRELLREGQAFYIHNRVESID-----RAASRLRALVPE--ARI 871

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M++   E ++  F N    +L+ TT++E GID+ +A+ +I+E A++FGL+QLHQ
Sbjct: 872  ATAHGQMNEHVLEKLIVDFWNKEYDVLVCTTIVESGIDITNANTLIVERADNFGLSQLHQ 931

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +     Y P  PL++ ++ RL+ +    D   G  +A +DL+ R  G +
Sbjct: 932  LRGRVGRGRERAYSYFTYPPEKPLTETAHERLATIAQHTDLGAGMYVAMKDLEIRGAGNL 991

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +QSG  +      +L+  ++  A ++
Sbjct: 992  LGGEQSGHIE--GVGFDLYIRMVGEAVEE 1018


>gi|218885389|ref|YP_002434710.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218756343|gb|ACL07242.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1197

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 136/445 (30%), Positives = 230/445 (51%), Gaps = 20/445 (4%)

Query: 223  PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
              + R A +++ A  + +   RK  K     P+   G++ ++   +  F  T  Q  AI+
Sbjct: 593  KDKARKAIEKIAADLVQMYAYRKVAKGYRYGPL---GELYREFEASFGFEETPDQARAIQ 649

Query: 283  DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
            D+L DM +   M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QHY+  +
Sbjct: 650  DVLDDMEKPEPMDRLVCGDVGFGKTEVALRAAFRAAAEGRQVALLCPTTVLAEQHYQTFR 709

Query: 343  KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
                   + V +++  + +  +++ L+  A GQ  I+IGTH L  D +Q   L L+++DE
Sbjct: 710  SRLAGFPVNVGMLSRFVSRQKQKEVLQAAARGQIDILIGTHRLLSDDVQLPNLGLLVLDE 769

Query: 403  QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
            + RFGV+ + KL +       L +TATPIPRTL L+  G  ++S I   P  RKP+ T +
Sbjct: 770  EQRFGVRHKEKLKKFRKNVDALTLTATPIPRTLQLSMSGIRELSVIETAPPERKPVATAL 829

Query: 463  IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TSSIAI 520
            I  ++ + + + L+  ++   + +W+  +++          +ER          T+ + +
Sbjct: 830  IERDQ-NALRQILEREIAREGQVFWVHNRVQ---------GLERVAEFVRGLVPTARVGM 879

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+M + + E  M  F +G   +L+ T ++E G+D   A+ +I++ A+ FGL QL+QLR
Sbjct: 880  AHGQMGERELEDTMHKFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLGQLYQLR 939

Query: 581  GRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
            GRVGR +  +  + +      L + +  R+ ++   +    GF +A EDL+ R  G ILG
Sbjct: 940  GRVGRSDRQAYAVFVVSDAERLPEQARQRMRIILELDYLGAGFQVAMEDLRLRGAGNILG 999

Query: 636  IKQSGMPKFLIAQPELHDSLLEIAR 660
              QSG    L     L     E+AR
Sbjct: 1000 EVQSGHMTRLGLDLYLEMLEEEVAR 1024


>gi|296082243|emb|CBI21248.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 153/457 (33%), Positives = 236/457 (51%), Gaps = 30/457 (6%)

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY----DELLAGQIALLLMRKQFKKEI 251
           + + PS          PR       TS    R        + +   +  L + +  +K  
Sbjct: 15  RYNLPS------ESKRPRTLSKLSDTSIWERRRIKGRVAIQKMVVDLMELYLHRLKQKRP 68

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKTLVA 310
             P +       +      + PT  Q+ A  D+ +D+  ++  M R++ GDVG GKT VA
Sbjct: 69  PYPKSP---GMAEFEAQFSYEPTPDQKQAFIDVEEDLTERETPMDRLICGDVGFGKTEVA 125

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALE 369
           L A+   V AG QA+++AP  +LA+QH++ I +++++   I V +++     A + K L 
Sbjct: 126 LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVITERFSKYPNIKVGLLSRFQTTAEKEKHLR 185

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            I HG   II+GTH+L  + + Y  L L++VDE+ RFGV+Q+ K+    T+  VL ++AT
Sbjct: 186 MIKHGDLDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSAT 245

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L   G  D S I+  P  R PI T +   N+ +++I  +K  L  G + +++ 
Sbjct: 246 PIPRTLYLALTGFRDASLISTPPPERVPIITHLSAYNK-EKIISAIKFELGRGGQIFYVL 304

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P+I        + + E    L   F    IAI HG+      E  MD F  G  K+LI T
Sbjct: 305 PRI--------KGLEEVMEFLECSFPDVEIAIAHGKQYSKQLEETMDRFAQGEIKILICT 356

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYT 606
            ++E G+D+ +A+ III+  + FGLAQL+QLRGRVGR ++ +   L Y     LS  +  
Sbjct: 357 NIVESGLDIQNANTIIIQEVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALE 416

Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           RLS L+   D   GF +AE D+  R  G I G +Q+G
Sbjct: 417 RLSALEECRDLGQGFQLAERDMGIRGFGNIFGEQQTG 453


>gi|302519736|ref|ZP_07272078.1| transcription-repair coupling factor [Streptomyces sp. SPB78]
 gi|302428631|gb|EFL00447.1| transcription-repair coupling factor [Streptomyces sp. SPB78]
          Length = 1178

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 135/488 (27%), Positives = 232/488 (47%), Gaps = 22/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 576  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGPDTPWQRELEDAFPYAETPDQL 633

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 634  TTISEVKSDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQEGKQVAVLVPTTLLVQQHF 693

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + +  ++        +  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 694  STFSERYAQFPVTIRALSRFQSDTEAKATLEGLRDGSVDLVIGTHRLFSSETKFKDLGLV 753

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 754  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 813

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   ++   ++  L    + ++I  +++            R  ++     + I
Sbjct: 814  LTFVGPYDE-KQIGAAIRRELLREGQVFYIHNRVDSID-----RAAARLRAVVPE--ARI 865

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 866  ATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 925

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 926  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 985

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-----YLY 688
            LG +QSG         +L+  ++  A  D +  L    +        I + +     + Y
Sbjct: 986  LGGEQSGHI--AGVGFDLYVRMVGEAVADYRAQLDGTSEEELPPEVKIELPVDAHVPHEY 1043

Query: 689  QYNEAFQF 696
               E  + 
Sbjct: 1044 APGERLRL 1051


>gi|297832728|ref|XP_002884246.1| hypothetical protein ARALYDRAFT_477305 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330086|gb|EFH60505.1| hypothetical protein ARALYDRAFT_477305 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 823

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 161/486 (33%), Positives = 248/486 (51%), Gaps = 32/486 (6%)

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL----AYDELLAGQIALLLMRKQFK 248
           LL + + P      N    PR       TS    R        + +   +  L + +  +
Sbjct: 195 LLYRYNLP------NETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHRLRQ 248

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKT 307
           K    P N    I        P++ T  Q+ A  D+ +D+  ++  M R++ GDVG GKT
Sbjct: 249 KRYPYPKNP---IMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKT 305

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRK 366
            VAL A+   V AG QA+++AP  +LA+QHY+ I +      QI V +++    +A + +
Sbjct: 306 EVALRAIFCVVSAGKQAMVLAPTIVLAKQHYDVISERFSLYPQIKVGLLSRFQTKAEKEE 365

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE I  G  +II+GTH+L    + Y  L L++VDE+ RFGV+Q+ K+    T+  VL +
Sbjct: 366 YLEMIKDGHLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTL 425

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL L   G  D S I+  P  R PIKT +    R ++VIE +K  L  G + +
Sbjct: 426 SATPIPRTLYLALTGFRDASLISTPPPERIPIKTHLSSF-RKEKVIEAIKNELDRGGQVF 484

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++ P+I        + + E  + L E F    IA+ HG+      E  M+ F  G  K+L
Sbjct: 485 YVLPRI--------KGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKIL 536

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKN 603
           I T ++E G+D+ +A+ III++ + FGLAQL+QLRGRVGR ++ +   L Y     LS  
Sbjct: 537 ICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQ 596

Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +  RLS L+   +   GF +AE D+  R  G I G +Q+G         +L   +L  + 
Sbjct: 597 ALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGN--VGIDLFFEMLFESL 654

Query: 661 KDAKHI 666
              + +
Sbjct: 655 SKVEEL 660


>gi|296448068|ref|ZP_06889971.1| transcription-repair coupling factor [Methylosinus trichosporium
            OB3b]
 gi|296254425|gb|EFH01549.1| transcription-repair coupling factor [Methylosinus trichosporium
            OB3b]
          Length = 1173

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 140/455 (30%), Positives = 224/455 (49%), Gaps = 19/455 (4%)

Query: 222  SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
               R+    + +      L+ +  Q        +     +  +     P+  T+ Q +AI
Sbjct: 573  WQTRKARMKNRIREMAKGLIAIAAQRMLRQATKLAPPEGLYDEFCARFPYDETEDQAAAI 632

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            + +L D+S    M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QHY+  
Sbjct: 633  EAVLDDLSSGRPMDRLVCGDVGFGKTEVALRAAFCAAINGRQVAVVVPTTLLARQHYKTF 692

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
                    I V  ++     A  R A   IA G   I++GTHA+   +I +  L LVI+D
Sbjct: 693  STRFSGLPIRVAQLSRMTTAADARLAKSGIADGTIDIVVGTHAVLGKTISFKDLGLVIID 752

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+  FGV  + +L +     HVL ++ATPIPRTL L   G  ++S I   P  R  +++ 
Sbjct: 753  EEQHFGVGHKERLKELRAEVHVLTLSATPIPRTLQLAMTGVRELSLIATAPVDRLAVRSF 812

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAI 520
            + P + +  V E L      G +A+++CP+IE+ +        +    L E    +   +
Sbjct: 813  VSPFDPL-IVREALLRERYRGGQAFFVCPRIEDLE--------DAAAFLREVVPEAKFVM 863

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+M+  D E  M +F +G   +L++TT++E G+D+  A+ +I+  A+ FGLAQL+QLR
Sbjct: 864  AHGQMAAGDLEERMTAFYDGKYDILLSTTIVESGLDIPTANTLIVWRADMFGLAQLYQLR 923

Query: 581  GRVGRGEEISSCILLYHPP---LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            GRVGR  +  +  L   P    ++  +  RL VL++ +    GF +A  DL  R  G +L
Sbjct: 924  GRVGRS-KTRAYALFTTPANKTITPQAQKRLEVLQSLDTLGAGFQLASHDLDIRGAGNLL 982

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            G +QSG         EL+  +L  A    K  + +
Sbjct: 983  GDEQSGHI--KEVGYELYQQMLGDAITLLKAGIEE 1015


>gi|318060504|ref|ZP_07979227.1| transcription-repair coupling factor [Streptomyces sp. SA3_actG]
 gi|318077247|ref|ZP_07984579.1| transcription-repair coupling factor [Streptomyces sp. SA3_actF]
          Length = 1178

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 135/488 (27%), Positives = 232/488 (47%), Gaps = 22/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 576  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGPDTPWQRELEDAFPYAETPDQL 633

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 634  TTISEVKSDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQEGKQVAVLVPTTLLVQQHF 693

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + +  ++        +  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 694  STFSERYAQFPVTIRALSRFQSDTEAKATLEGLRDGSVDLVIGTHRLFSSETKFKDLGLV 753

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 754  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 813

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   ++   ++  L    + ++I  +++            R  ++     + I
Sbjct: 814  LTFVGPYDE-KQIGAAIRRELLREGQVFYIHNRVDSID-----RAAARLRAVVPE--ARI 865

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 866  ATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 925

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 926  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 985

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-----YLY 688
            LG +QSG         +L+  ++  A  D +  L    +        I + +     + Y
Sbjct: 986  LGGEQSGHI--AGVGFDLYVRMVGEAVADYRAQLDGTSEEELPPEVKIELPVDAHVPHEY 1043

Query: 689  QYNEAFQF 696
               E  + 
Sbjct: 1044 APGERLRL 1051


>gi|296128756|ref|YP_003636006.1| transcription-repair coupling factor [Cellulomonas flavigena DSM
            20109]
 gi|296020571|gb|ADG73807.1| transcription-repair coupling factor [Cellulomonas flavigena DSM
            20109]
          Length = 1214

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 126/438 (28%), Positives = 217/438 (49%), Gaps = 15/438 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +A ++  L          G     +    +++     +  T  Q 
Sbjct: 606  DWQKTKGRARKAVKEIAAELIRLY--SARMATPGHAFGPDTPWQRELEDAFAYVETPDQL 663

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH 
Sbjct: 664  ATIEEVKADMEKTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHL 723

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++        ++ +E +A G   ++IGTH L   S+++  L LV
Sbjct: 724  DTFTERYAPYPVKVAALSRFQTAKESQQVVEGLADGSVDVVIGTHRLITGSVRFKDLGLV 783

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 784  IIDEEQRFGVEHKETLKALRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPV 843

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + +++  ++E  + +       R N L     + I
Sbjct: 844  LTFVGPYEE-KQISAAIRRELLREGQVFYVHNKVESIERTAS-----RLNELVPE--ARI 895

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M +   E V+  F      +L+ TT++E G+D+ +A+ +I+E A+  GL+QLHQ
Sbjct: 896  AVAHGKMGEHQLEQVIVDFWEKRFDVLVCTTIVETGLDISNANTLILERADRLGLSQLHQ 955

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  PL++ ++ RL  +    D   G  +A +DL+ R  G +
Sbjct: 956  LRGRVGRGRERAYAYFLYPPEVPLTETAHDRLQTIAAHTDLGAGMAVAMKDLEIRGAGNL 1015

Query: 634  LGIKQSGMPKFLIAQPEL 651
            LG +QSG  + +     +
Sbjct: 1016 LGGEQSGHIEGVGFDLYV 1033


>gi|331694753|ref|YP_004330992.1| transcription-repair coupling factor [Pseudonocardia dioxanivorans
            CB1190]
 gi|326949442|gb|AEA23139.1| transcription-repair coupling factor [Pseudonocardia dioxanivorans
            CB1190]
          Length = 1194

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 137/469 (29%), Positives = 229/469 (48%), Gaps = 22/469 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W+            +A  +  L   +Q     G     +    +++    PF+ T  Q 
Sbjct: 583  DWSKTKSRARKAVRDIAAGLVQLYAARQA--SPGHAFASDSPWQRELEDAFPFTETPDQL 640

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +LA QH 
Sbjct: 641  AAIDEVKADMERPVPMDRVISGDVGFGKTEIAVRAAFKAVQDGKQVAVLVPTTLLATQHL 700

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                   +   + V+ ++     A  R  +E +A G   +++GTH L Q  +++  L LV
Sbjct: 701  ATFSDRMRAFPVTVKGLSRFTDAAEARATIEGLADGTVDVVVGTHRLLQTGVRWKDLGLV 760

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +T       VL ++ATPIPRTL ++  G  ++S IT  P  R P 
Sbjct: 761  IVDEEQRFGVEHKEHITALRAHVDVLTLSATPIPRTLEMSLAGIREMSTITTPPEARHPT 820

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   ++  L    + +++  ++                 L     + I
Sbjct: 821  LTYVGAYD-PKQVGAAIRRELLRDGQVFYVHNRVSTID-----RAARTVQELVPE--ARI 872

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++   E  ++ F +    +L+ TT++E G+D+ +A+ +I+E ++  GL+QLHQ
Sbjct: 873  AVAHGQMNEDVLERTVNGFWHREFDVLVCTTIVENGLDISNANTLIVERSDTLGLSQLHQ 932

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +        G  +A +DL+ R  G I
Sbjct: 933  LRGRVGRGRERGYAYFLYPPDTPLTETAHDRLATIAQHSGLGSGAAVAMKDLEIRGAGNI 992

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIA----RKDAKHILTQDPD-LTSVR 677
            LG +QSG         +L+  L+  A    RK A      +P+ L  VR
Sbjct: 993  LGAEQSGHI--AGVGFDLYIRLVGEAVATFRKQAGSQGADEPEPLAEVR 1039


>gi|290959824|ref|YP_003491006.1| transcriptional-repair coupling factor [Streptomyces scabiei 87.22]
 gi|260649350|emb|CBG72465.1| putative transcriptional-repair coupling factor [Streptomyces scabiei
            87.22]
          Length = 1177

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 137/487 (28%), Positives = 233/487 (47%), Gaps = 19/487 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 575  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGADTPWQRELEDAFPYAETPDQL 632

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++ +DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 633  TTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHF 692

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V  ++        +  LE +  G   I+IGTH LF    ++  L LV
Sbjct: 693  GTFSERYSQFPVNVRALSRFQTDTEAKGTLEGLREGAVDIVIGTHRLFSSETKFKDLGLV 752

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 753  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 812

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P     ++   ++  L    + ++I  ++E            R   +     + I
Sbjct: 813  LTFVGPYEE-KQIGAAIRRELLREGQVFYIHNRVESID-----RAASRLREIVPE--ARI 864

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  + FGL+QLHQ
Sbjct: 865  ATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDTFGLSQLHQ 924

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 925  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 984

Query: 634  LGIKQSGMP---KFLIAQPELHDSLLEIARKDAKHILTQDPDLT-SVRGQSIRILLYLYQ 689
            LG +QSG      F +    + +++ +  R+     + ++P L   +       + + Y 
Sbjct: 985  LGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLESGGIEEEPPLEVKIELPVDAHVPHDYA 1044

Query: 690  YNEAFQF 696
              E  + 
Sbjct: 1045 PGERLRL 1051


>gi|333026450|ref|ZP_08454514.1| putative transcriptional-repair coupling factor [Streptomyces sp.
            Tu6071]
 gi|332746302|gb|EGJ76743.1| putative transcriptional-repair coupling factor [Streptomyces sp.
            Tu6071]
          Length = 1181

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 135/488 (27%), Positives = 232/488 (47%), Gaps = 22/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 579  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGPDTPWQRELEDAFPYAETPDQL 636

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 637  TTISEVKSDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQEGKQVAVLVPTTLLVQQHF 696

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + +  ++        +  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 697  STFSERYAQFPVTIRALSRFQTDTEAKATLEGLRDGSVDLVIGTHRLFSSETKFKDLGLV 756

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 757  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 816

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   ++   ++  L    + ++I  +++            R  ++     + I
Sbjct: 817  LTFVGPYDE-KQIGAAIRRELLREGQVFYIHNRVDSID-----RAAARLRAVVPE--ARI 868

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 869  ATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 928

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 929  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 988

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-----YLY 688
            LG +QSG         +L+  ++  A  D +  L    +        I + +     + Y
Sbjct: 989  LGGEQSGHI--AGVGFDLYVRMVGEAVADYRAQLDGTSEEELPPEVKIELPVDAHVPHEY 1046

Query: 689  QYNEAFQF 696
               E  + 
Sbjct: 1047 APGERLRL 1054


>gi|67458759|ref|YP_246383.1| transcription-repair coupling factor [Rickettsia felis URRWXCal2]
 gi|75536784|sp|Q4UMJ0|MFD_RICFE RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|67004292|gb|AAY61218.1| Transcription-repair coupling factor [Rickettsia felis URRWXCal2]
          Length = 1142

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 130/453 (28%), Positives = 232/453 (51%), Gaps = 21/453 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQ--IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D   +S  +   A  +    +  + L+ +  + K      +  + +   K   N PFS T
Sbjct: 520 DKLGSSSWQRSKAKLKNRIKEIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSET 579

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIMAPI 330
           + Q +AI DI +D+     M R++ GDVG GKT VA+ A+        E   Q  ++ P 
Sbjct: 580 EDQLTAINDIKEDLRNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPT 639

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            IL  QH+    +  +   + ++ ++  +     +     +  G+ +IIIGTH+L   + 
Sbjct: 640 TILCSQHFSRFIERFKGFGLNIKQLSSVISAKEAKIIRSELESGKINIIIGTHSLLHKNT 699

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +++ L L+I+DE+  FGV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I  
Sbjct: 700 KFFNLKLLIIDEEQHFGVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIAT 759

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R  ++T+++P + +  + + L      G +++++ P+I++ ++   +        +
Sbjct: 760 PPLNRLEVRTMVMPFDPV-IIRDALLREHFRGGRSFYVVPRIKDIEDIEKQ-----LKQI 813

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
               +  IA  HG+M+    + VM  F  G   +L++TT+IE GID+ +A+ ++I  A+ 
Sbjct: 814 VPELSYKIA--HGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMVIHKADM 871

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDL 625
            GL+QL+QLRGR+GRG+      L    H  ++ +S  RL +++N+     GF IA  D+
Sbjct: 872 LGLSQLYQLRGRIGRGKVRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASHDM 931

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             R  G ++G +QSG         EL+  +LE 
Sbjct: 932 DLRGFGNLIGEEQSGQI--KEVGTELYQEMLEE 962


>gi|157825985|ref|YP_001493705.1| transcription-repair coupling factor [Rickettsia akari str.
           Hartford]
 gi|157799943|gb|ABV75197.1| Transcription-repair coupling factor [Rickettsia akari str.
           Hartford]
          Length = 1121

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 129/453 (28%), Positives = 231/453 (50%), Gaps = 21/453 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQ--IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D   +   +   A  +    +  + L+ +  + K      +  + +   K   N PFS T
Sbjct: 520 DKLGSVSWQRTKAKLKNHIKEIALHLIQIAAKRKLNSSAAVEFDLEEYDKFCANFPFSET 579

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIMAPI 330
           + Q +AI DI +D+     M R++ GDVG GKT VA+ A+        E   Q  ++ P 
Sbjct: 580 EDQLTAINDIKEDLRNGLLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPT 639

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            IL  QH+    +  +   + ++ ++  +     +     +  G+ +II+GTH+L   +I
Sbjct: 640 TILCSQHFSRFIERFKGFGLNIKQLSSVVSSKEAKIIRAELESGKINIIVGTHSLLHKNI 699

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +++ L L+I+DE+  FGV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I  
Sbjct: 700 KFFNLKLLIIDEEQHFGVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIAT 759

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P  R  ++T+++P + +  + + L      G +++++  +I++ ++   +        +
Sbjct: 760 PPLNRLEVRTMVMPFDSV-IIRDALLREHFRGGRSFYVVSRIKDIEDIEKQ-----LKHI 813

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
               +  IA  HG+M+    + VM  F  G   +L++TT+IE GID+ +A+ +II  A+ 
Sbjct: 814 VPELSYKIA--HGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHKADM 871

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDL 625
            GL+QL+QLRGR+GRG+      L    H  ++ +S  RL +++N+     GF IA  D+
Sbjct: 872 LGLSQLYQLRGRIGRGKVRGYAYLTVANHKKMTSHSLRRLEIIQNSCALGSGFTIASHDM 931

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             R  G ++G +QSG         EL+  +LE 
Sbjct: 932 DLRGFGNLIGEEQSGQI--KEVGTELYQEMLEE 962


>gi|227494754|ref|ZP_03925070.1| possible transcription-repair coupling factor [Actinomyces coleocanis
            DSM 15436]
 gi|226831754|gb|EEH64137.1| possible transcription-repair coupling factor [Actinomyces coleocanis
            DSM 15436]
          Length = 1199

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 127/451 (28%), Positives = 222/451 (49%), Gaps = 17/451 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            EW     +       +A ++  L   +      G     +    +++    P+  T  Q 
Sbjct: 597  EWAKTKAKARKAVREIASELVRLYAARHA--TKGHAFAPDTPWQRELEEAFPYVETPDQL 654

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R+L GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH 
Sbjct: 655  ATIDEVKADMEKPTPMDRLLCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHL 714

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +      + +  ++    +    +  E++  G   ++IGTH+L   ++++  L LV
Sbjct: 715  ETFTQRYAGFPVDIASLSRFSSKKEADEIKEKLLKGSIDVVIGTHSLVSGAVRFKNLGLV 774

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L Q  T   VL M+ATPIPRTL +   G  ++S +   P  R PI
Sbjct: 775  IIDEEQRFGVEHKETLKQLRTDVDVLSMSATPIPRTLEMAVTGIREMSVLQTPPEDRHPI 834

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       +V+  +K  L    + +++  ++E+  +   +      + L     + +
Sbjct: 835  LTFVGAHTD-QQVVAAIKRELLRDGQVFYVHNRVEDIDKVAGK-----ISELVPE--ARV 886

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG++++   E V+  F N    +LI TT++E G+D+ +A+ +I++ A+  GL+QLHQ
Sbjct: 887  RVAHGKLNEHQLERVIVDFWNREFDVLICTTIVETGLDISNANTLIVDRADAMGLSQLHQ 946

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY     L++ ++ RL  +    D   G  +A++DL+ R  G +
Sbjct: 947  LRGRVGRGRERGYAYFLYPGEKVLTETAHERLRTIATNTDLGAGIAVAQKDLEIRGAGNL 1006

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            LG +QSG         +L+  ++  A    K
Sbjct: 1007 LGGEQSGHI--AGVGFDLYVRMVADAVAAFK 1035


>gi|152965035|ref|YP_001360819.1| transcription-repair coupling factor [Kineococcus radiotolerans
            SRS30216]
 gi|151359552|gb|ABS02555.1| transcription-repair coupling factor [Kineococcus radiotolerans
            SRS30216]
          Length = 1193

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 131/490 (26%), Positives = 231/490 (47%), Gaps = 24/490 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +AG +  L          G     +    +++    P+  T  Q 
Sbjct: 580  DWAKTKSNARRAVKQIAGDLIKLY--SARMATKGYQFGPDTPWQRELEDAFPYVETPDQL 637

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            ++I ++  DM +   M R++ GDVG GKT +AL A   AV+ G Q  ++ P  +L QQH+
Sbjct: 638  ASIDEVKADMMKPVPMDRLICGDVGYGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHF 697

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      ++ + ++   P    ++ ++ +A G   I+IGTH L    + +  L LV
Sbjct: 698  KTFAERYAQFPVVAKPLSRFTPGKEAKETIKGLADGSVDIVIGTHRLLSGEVAFKDLGLV 757

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 758  VVDEEQRFGVEHKEALKTLRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPV 817

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       ++   ++  L    + +++  ++   +         R   L     + I
Sbjct: 818  LTYVGGQEE-KQITAAIRRELLREGQVFYVHNRVSSIE-----RTAARLKELVPE--ARI 869

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M +   E V+  F      +L+ TT++E G+D+ +A+ +I+E A+  GL+QLHQ
Sbjct: 870  ATAHGQMGEHRLEQVVVDFWEKRFDVLVCTTIVETGLDISNANTLIVERADAMGLSQLHQ 929

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    L+ P  PL++ ++ RL+ +    D   G  +A +DL+ R  G +
Sbjct: 930  LRGRVGRGRERAYAYFLFPPEKPLTETAHDRLATIAQHTDLGSGMAVAMKDLEIRGAGNM 989

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-------Y 686
            LG +QSG         +L+  ++  A  D ++ +             ++I L       +
Sbjct: 990  LGGEQSGHI--AGVGFDLYMRMVADAVADVRNQVPGAQSDEEPEPTEVKIELPVDAHVPH 1047

Query: 687  LYQYNEAFQF 696
             Y  +E  + 
Sbjct: 1048 DYVPSERLRL 1057


>gi|157803549|ref|YP_001492098.1| hypothetical protein A1E_01840 [Rickettsia canadensis str. McKiel]
 gi|157784812|gb|ABV73313.1| hypothetical protein A1E_01840 [Rickettsia canadensis str. McKiel]
          Length = 1119

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 128/442 (28%), Positives = 224/442 (50%), Gaps = 19/442 (4%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +    + +    + L+ +  Q K      I  + +   K   + PFS T+ Q +AI DI 
Sbjct: 529 KAKLKNRIKEIALHLIQIAAQRKLNTNASIEFDLEEYDKFCAHFPFSETEDQLTAINDIR 588

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----GGQAVIMAPIGILAQQHYEFI 341
           +D+     M R++ GDVG GKT VA+ A+    ++      Q  ++ P  IL  QH    
Sbjct: 589 EDLRSGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEYSPQVAVVVPTTILCSQHVSRF 648

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            +  +   + ++ ++  +     +     +  G+ +IIIGTH+L   + +++ L L+I+D
Sbjct: 649 TERFKGFGLNIKQLSSIISPKEAKIIRSELESGKINIIIGTHSLLHKNTKFFNLKLLIID 708

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+  FGV Q+  L Q  ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  ++T 
Sbjct: 709 EEQHFGVSQKEFLKQLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTS 768

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           ++P N +  + + L      G +++++ P+I +  +   +        +    +  I  +
Sbjct: 769 VMPFNPV-IIRDALLREHFRGGRSFYVVPRINDILDIEKQ-----LKQIVPELSYKI--V 820

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           H +M     + VM  F  G   +L++TT+IE GID+  A+ +II  A+  GL+QL+QLRG
Sbjct: 821 HRKMPYNKIDEVMSEFYAGKFDILVSTTIIESGIDIQGANTMIIHKADMLGLSQLYQLRG 880

Query: 582 RVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636
           R+GRG+      L+   H  ++ +S  RL +++N+     GF IA  D+  R  G ++G 
Sbjct: 881 RIGRGKMRGYAYLIVESHKKMTAHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGE 940

Query: 637 KQSGMPKFLIAQPELHDSLLEI 658
           +QSG         EL+  +LE 
Sbjct: 941 EQSGQI--REVGTELYQEMLEE 960


>gi|25084218|gb|AAN72199.1| putative helicase [Arabidopsis thaliana]
          Length = 822

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 159/486 (32%), Positives = 247/486 (50%), Gaps = 32/486 (6%)

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL----AYDELLAGQIALLLMRKQFK 248
           LL + + P      N    PR       TS    R        + +   +  L + +  +
Sbjct: 194 LLYRYNLP------NETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMGLYLHRLRQ 247

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKT 307
           K    P N    I        P++ T  Q+ A  D+ +D+  ++  M R++ GDVG GKT
Sbjct: 248 KRYPYPKNP---IMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKT 304

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRK 366
            VAL A+   V  G QA+++AP  +LA+QHY+ I +       I V +++    +A + +
Sbjct: 305 EVALRAIFCVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEE 364

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE I  G  +II+GTH+L    + Y  L L++VDE+ RFGV+Q+ K+    T+  VL +
Sbjct: 365 YLEMIKTGHLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTL 424

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL L   G  D S I+  P  R PIKT +    R ++VIE +K  L  G + +
Sbjct: 425 SATPIPRTLYLALTGFRDASLISTPPPERIPIKTHLSSF-RKEKVIEAIKNELDRGGQVF 483

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++ P+I        + + E  + L E F    IA+ HG+      E  M+ F  G  K+L
Sbjct: 484 YVLPRI--------KGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKIL 535

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKN 603
           I T ++E G+D+ +A+ III++ + FGLAQL+QLRGRVGR ++ +   L Y     LS  
Sbjct: 536 ICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQ 595

Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +  RLS L+   +   GF +AE+D+  R  G I G +Q+G         +L   +L  + 
Sbjct: 596 ALERLSALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGN--VGIDLFFEMLFESL 653

Query: 661 KDAKHI 666
              + +
Sbjct: 654 SKVEEL 659


>gi|331003610|ref|ZP_08327106.1| hypothetical protein HMPREF0491_01968 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412330|gb|EGG91722.1| hypothetical protein HMPREF0491_01968 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 583

 Score =  313 bits (801), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 132/396 (33%), Positives = 213/396 (53%), Gaps = 15/396 (3%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  AI+D  +D+     M R++ GDVG GKT +AL      ++ G Q + + P  IL
Sbjct: 39  TYDQLKAIEDAKRDLETGKIMDRLICGDVGYGKTEIALRTAFKVIQEGYQVLYLVPTTIL 98

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QHY    +  ++  + + +++    +  + K +E +  G   I+IGTH L    +   
Sbjct: 99  ARQHYNTFIQRMKDFPVKIALLSRFNTKKEQTKTIEDLEKGLVDIVIGTHRLLSKDVLPK 158

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           KL LVIVDE+ RFGV+ + KL Q     +VL +TATPIPRTL ++  G  D+S + E P 
Sbjct: 159 KLGLVIVDEEQRFGVRHKEKLKQLCENVNVLTLTATPIPRTLHMSLSGIRDLSVLEEPPV 218

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            RKPI+T ++  +  + V E ++  ++ G + Y++  ++   +E     V     +L   
Sbjct: 219 DRKPIQTYVMEYHD-ETVKEAIRREVARGGQVYYLYNRVNNIEE-----VAAHVRALLPD 272

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              ++  +HGRM +   E+ M  F NG   +L+ TT++E G+DV +A+ II+ +A+  GL
Sbjct: 273 I--NVEYVHGRMDERHLEARMVDFINGDVDVLVTTTIVETGLDVPNANTIIVHDADRLGL 330

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQR 628
           +QL+QLRGRVGR +  +   L+Y     LS+ +  RL  ++       G  IA  DL+ R
Sbjct: 331 SQLYQLRGRVGRSKRSAYAFLMYTRNKLLSEEASKRLKAIREFTELGSGIKIAMRDLEIR 390

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             G +LG+ Q G  + +     L+  LL  A +  K
Sbjct: 391 GAGNVLGVTQHGHMEEVGYD--LYVKLLNTAVRALK 424


>gi|13877639|gb|AAK43897.1|AF370520_1 putative helicase [Arabidopsis thaliana]
          Length = 823

 Score =  313 bits (801), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 159/486 (32%), Positives = 247/486 (50%), Gaps = 32/486 (6%)

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL----AYDELLAGQIALLLMRKQFK 248
           LL + + P      N    PR       TS    R        + +   +  L + +  +
Sbjct: 195 LLYRYNLP------NETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMGLYLHRLRQ 248

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKT 307
           K    P N    I        P++ T  Q+ A  D+ +D+  ++  M R++ GDVG GKT
Sbjct: 249 KRYPYPKNP---IMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKT 305

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRK 366
            VAL A+   V  G QA+++AP  +LA+QHY+ I +       I V +++    +A + +
Sbjct: 306 EVALRAIFCVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEE 365

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE I  G  +II+GTH+L    + Y  L L++VDE+ RFGV+Q+ K+    T+  VL +
Sbjct: 366 YLEMIKTGHLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTL 425

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL L   G  D S I+  P  R PIKT +    R ++VIE +K  L  G + +
Sbjct: 426 SATPIPRTLYLALTGFRDASLISTPPPERIPIKTHLSSF-RKEKVIEAIKNELDRGGQVF 484

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++ P+I        + + E  + L E F    IA+ HG+      E  M+ F  G  K+L
Sbjct: 485 YVLPRI--------KGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKIL 536

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKN 603
           I T ++E G+D+ +A+ III++ + FGLAQL+QLRGRVGR ++ +   L Y     LS  
Sbjct: 537 ICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQ 596

Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +  RLS L+   +   GF +AE+D+  R  G I G +Q+G         +L   +L  + 
Sbjct: 597 ALERLSALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGN--VGIDLFFEMLFESL 654

Query: 661 KDAKHI 666
              + +
Sbjct: 655 SKVEEL 660


>gi|145331730|ref|NP_001078092.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|6513947|gb|AAF14851.1|AC011664_33 putative helicase [Arabidopsis thaliana]
 gi|332640234|gb|AEE73755.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
          Length = 822

 Score =  313 bits (801), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 159/486 (32%), Positives = 247/486 (50%), Gaps = 32/486 (6%)

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL----AYDELLAGQIALLLMRKQFK 248
           LL + + P      N    PR       TS    R        + +   +  L + +  +
Sbjct: 194 LLYRYNLP------NETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHRLRQ 247

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKT 307
           K    P N    I        P++ T  Q+ A  D+ +D+  ++  M R++ GDVG GKT
Sbjct: 248 KRYPYPKNP---IMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKT 304

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRK 366
            VAL A+   V  G QA+++AP  +LA+QHY+ I +       I V +++    +A + +
Sbjct: 305 EVALRAIFCVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEE 364

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE I  G  +II+GTH+L    + Y  L L++VDE+ RFGV+Q+ K+    T+  VL +
Sbjct: 365 YLEMIKTGHLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTL 424

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL L   G  D S I+  P  R PIKT +    R ++VIE +K  L  G + +
Sbjct: 425 SATPIPRTLYLALTGFRDASLISTPPPERIPIKTHLSSF-RKEKVIEAIKNELDRGGQVF 483

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++ P+I        + + E  + L E F    IA+ HG+      E  M+ F  G  K+L
Sbjct: 484 YVLPRI--------KGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKIL 535

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKN 603
           I T ++E G+D+ +A+ III++ + FGLAQL+QLRGRVGR ++ +   L Y     LS  
Sbjct: 536 ICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQ 595

Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +  RLS L+   +   GF +AE+D+  R  G I G +Q+G         +L   +L  + 
Sbjct: 596 ALERLSALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGN--VGIDLFFEMLFESL 653

Query: 661 KDAKHI 666
              + +
Sbjct: 654 SKVEEL 659


>gi|18396054|ref|NP_566160.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|332640233|gb|AEE73754.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
          Length = 823

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 159/486 (32%), Positives = 247/486 (50%), Gaps = 32/486 (6%)

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL----AYDELLAGQIALLLMRKQFK 248
           LL + + P      N    PR       TS    R        + +   +  L + +  +
Sbjct: 195 LLYRYNLP------NETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHRLRQ 248

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKT 307
           K    P N    I        P++ T  Q+ A  D+ +D+  ++  M R++ GDVG GKT
Sbjct: 249 KRYPYPKNP---IMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKT 305

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRK 366
            VAL A+   V  G QA+++AP  +LA+QHY+ I +       I V +++    +A + +
Sbjct: 306 EVALRAIFCVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEE 365

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            LE I  G  +II+GTH+L    + Y  L L++VDE+ RFGV+Q+ K+    T+  VL +
Sbjct: 366 YLEMIKTGHLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTL 425

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +ATPIPRTL L   G  D S I+  P  R PIKT +    R ++VIE +K  L  G + +
Sbjct: 426 SATPIPRTLYLALTGFRDASLISTPPPERIPIKTHLSSF-RKEKVIEAIKNELDRGGQVF 484

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++ P+I        + + E  + L E F    IA+ HG+      E  M+ F  G  K+L
Sbjct: 485 YVLPRI--------KGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKIL 536

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKN 603
           I T ++E G+D+ +A+ III++ + FGLAQL+QLRGRVGR ++ +   L Y     LS  
Sbjct: 537 ICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQ 596

Query: 604 SYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR 660
           +  RLS L+   +   GF +AE+D+  R  G I G +Q+G         +L   +L  + 
Sbjct: 597 ALERLSALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGN--VGIDLFFEMLFESL 654

Query: 661 KDAKHI 666
              + +
Sbjct: 655 SKVEEL 660


>gi|255543481|ref|XP_002512803.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223547814|gb|EEF49306.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 857

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 147/456 (32%), Positives = 240/456 (52%), Gaps = 28/456 (6%)

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL----AYDELLAGQIALLLMRKQFKKEI 251
           + S P      N    PR       TS   +R        + +   +  L + +  ++  
Sbjct: 200 RYSLP------NEKKRPRTLNKLNDTSTWEKRKTKGKIAIQKMVVDLMELYLHRLKQRRP 253

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKTLVA 310
             P +    +  +     P+ PT  Q  A  D+ +D+  ++  M R++ GDVG GKT VA
Sbjct: 254 PYPKSP---VMAEFTAQFPYEPTPDQFQAFNDVEKDLTERETPMDRLICGDVGFGKTEVA 310

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALE 369
           L A+   V AG QA+++AP  +LA+QH+E I +++++ + I V +++    Q+ +    E
Sbjct: 311 LRAIFCVVSAGKQAMVLAPTIVLAKQHFEVISERFSKYSNIKVGLLSRFQTQSVKEMYYE 370

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            I  G  +I++GTH+L    + Y  L L++VDE+ RFGV+Q+ K+    T+  VL ++AT
Sbjct: 371 MIKQGDLNIVVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSAT 430

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L   G  D S I+  P  R P+KT +   ++ ++VI  +K  L    + +++ 
Sbjct: 431 PIPRTLYLALTGFRDASLISTAPPERVPVKTFLSAYSK-EKVISAIKYELDRDGQVFYVL 489

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           P I+  +E     V++           +IA  HG+      E  M+ F  G  K+LI T 
Sbjct: 490 PLIKGLEE-----VMDFLEQSFPKVEKAIA--HGKQYSKQLEETMEKFVQGEIKILICTN 542

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTR 607
           ++E G+D+ +A+ III++ +HFGLAQL+QLRGRVGR ++ +   L Y     LS  +  R
Sbjct: 543 IVESGLDIQNANTIIIQDIQHFGLAQLYQLRGRVGRADKEAYAHLFYPDKSLLSDQALER 602

Query: 608 LSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           L  L+  ++   GF +AE D+  R  G I G +Q+G
Sbjct: 603 LKALEECKELGQGFQLAERDMGIRGFGTIFGEQQTG 638


>gi|330945143|gb|EGH46858.1| transcription-repair coupling factor [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 369

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 141/377 (37%), Positives = 204/377 (54%), Gaps = 15/377 (3%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R++ GDVG GKT VA+ A   AV  G Q  I+ P  +LAQQHY   +    +  + VE
Sbjct: 1   MDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYNSFRDRFADWPVTVE 60

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           +++          A+  +A G+  I+IGTH L QD ++   L LVI+DE+HRFGV+Q+ +
Sbjct: 61  VMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVIIDEEHRFGVRQKEQ 120

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++T ++  N+   + E
Sbjct: 121 LKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNK-PTIKE 179

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L   L  G + Y++   ++  +             L     + I I HG+M + + E V
Sbjct: 180 ALLRELLRGGQVYYLHNDVKTIE-----KCAADLAELVPE--ARIGIGHGQMRERELEQV 232

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLAQLHQLRGRVGR    +   
Sbjct: 233 MSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAY 292

Query: 594 LLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
           LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+LG  QSG        
Sbjct: 293 LLTPPRKQITHDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQSGQI--QAVG 350

Query: 649 PELHDSLLEIARKDAKH 665
             L+  +LE A K  + 
Sbjct: 351 FTLYMEMLERAVKSIRK 367


>gi|295838353|ref|ZP_06825286.1| transcription-repair coupling factor [Streptomyces sp. SPB74]
 gi|295826975|gb|EDY42784.2| transcription-repair coupling factor [Streptomyces sp. SPB74]
          Length = 1108

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 135/488 (27%), Positives = 231/488 (47%), Gaps = 22/488 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT          + +A  +  L          G     +    +++    P++ T  Q 
Sbjct: 579  DWTKTKARAKKAVKEIAADLIKLY--SARMAAPGHAFGPDTPWQRELEDAFPYAETPDQL 636

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH 
Sbjct: 637  TTISEVKSDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQEGKQVAVLVPTTLLVQQHL 696

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + +  ++        +  LE +  G   ++IGTH LF    ++  L LV
Sbjct: 697  STFSERYAQFPVTIRALSRFQTDTEAKATLEGLRDGSVDLVIGTHRLFSSETKFKDLGLV 756

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L +      VL M+ATPIPRTL +   G  ++S IT  P  R P+
Sbjct: 757  IVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPV 816

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T + P +   ++   ++  L    + ++I  +++            R  ++     + I
Sbjct: 817  LTFVGPYDE-KQIGAAIRRELLREGQVFYIHNRVDSID-----RAAARLRAVVPE--ARI 868

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+MS+   E V+  F      +L++TT++E GID+ +A+ +I+E  ++FGL+QLHQ
Sbjct: 869  ATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQ 928

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E      LY P  PL++ ++ RL+ +    +   G  +A +DL+ R  G +
Sbjct: 929  LRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNL 988

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL-----YLY 688
            LG +QSG         +L+  ++  A  D +  L    +        I + +     + Y
Sbjct: 989  LGGEQSGHI--AGVGFDLYVRMVGEAVADYRAQLDGTSEEELPPEVKIELPVDAHVPHEY 1046

Query: 689  QYNEAFQF 696
               E  + 
Sbjct: 1047 APGERLRL 1054


>gi|269219241|ref|ZP_06163095.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 848
            str. F0332]
 gi|269211388|gb|EEZ77728.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 848
            str. F0332]
          Length = 1194

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 138/494 (27%), Positives = 240/494 (48%), Gaps = 25/494 (5%)

Query: 188  WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            W+  D L + S  +  EA ++     K    +W        A  + +A ++  L   +Q 
Sbjct: 560  WVPTDSLDQVSRYAGGEAPSL----NKMGGSDWAKTKAGARAATKQIAQELVRLYAARQA 615

Query: 248  KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
                G   + +    +++  +  +  T  Q   I ++  DM +   M R++ GDVG GKT
Sbjct: 616  A--KGFQFSPDTPWQRELEDSFAYVETPDQLQTIDEVKADMEKPTPMDRLISGDVGYGKT 673

Query: 308  LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             +AL A   AV+ G QA ++ P  +L  QHYE  ++      + +  ++    +    + 
Sbjct: 674  EIALRAAFKAVQDGKQAAVLVPTTLLVSQHYETFRERYSGFPVRLAQLSRFQSEREAAET 733

Query: 368  LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            +  +A G   ++IGTH L   ++++  L LV+VDE+ RFGV+ +  L Q      VL M+
Sbjct: 734  VRGLADGTVDVVIGTHRLLTGNVRFKNLGLVVVDEEQRFGVEHKETLKQLYPDVDVLSMS 793

Query: 428  ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            ATPIPRTL +   G  ++S +   P  R P+ T + P +   +V+  ++  L    + ++
Sbjct: 794  ATPIPRTLEMAVTGVREMSTLATPPEERHPVLTYVGPKDN-KQVLAAIRRELLRDGQIFY 852

Query: 488  ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +  +       +   V  +   L     + + + HG+MS+   E V+ +F +    +L+ 
Sbjct: 853  VHNRT-----GDMARVAAQIGELVPE--ARVGVAHGKMSEHQLELVIQAFWDKEIDILVC 905

Query: 548  TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSY 605
            TT++E G+D+ +A+ +I+E+AE FGL+QLHQLRGRVGRG E +    LY+P   +++ + 
Sbjct: 906  TTIVETGLDISNANTLIVEDAERFGLSQLHQLRGRVGRGRERAYAYFLYNPDKAMTETAL 965

Query: 606  TRLSVL---KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA--- 659
             RL  +        G  +A  DL+ R  G +LG +QSG         +L+  ++  A   
Sbjct: 966  ERLRTIAANAELGSGIQVAMRDLEIRGAGNMLGGEQSGHI--AGVGFDLYVRMVADAVAR 1023

Query: 660  -RKDAKHILTQDPD 672
             R  A      D D
Sbjct: 1024 MRGKAPEEEDADVD 1037


>gi|83593061|ref|YP_426813.1| transcription-repair coupling factor [Rhodospirillum rubrum ATCC
            11170]
 gi|83575975|gb|ABC22526.1| Transcription-repair coupling factor [Rhodospirillum rubrum ATCC
            11170]
          Length = 1177

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 145/451 (32%), Positives = 228/451 (50%), Gaps = 17/451 (3%)

Query: 220  WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            W +   +       +A Q+  +   +Q K    I  +    +  +     P++ T  Q  
Sbjct: 575  WQARKAKLKQRIRDMAEQLIGVAAARQLKVGEVI--SPPEGLYDEFAARFPYAETDDQLR 632

Query: 280  AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
            AI D L D++    M R++ GDVG GKT VAL A  A   +G Q  ++ P  +LA+QH+ 
Sbjct: 633  AIADTLDDLAAGRPMDRLICGDVGFGKTEVALRAAFATAMSGRQVAVVVPTTLLARQHHL 692

Query: 340  FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
              K+      + +  ++  +     +   E +A G   I++GTHAL   ++++  L L+I
Sbjct: 693  TFKERFAGLPVRIGQLSRLVTARDTKAVKEEMAAGTLDIVVGTHALLAKTVRFRDLGLLI 752

Query: 400  VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
            VDE+  FGV  + +L Q     HVL +TATPIPRTL L   G  ++S I   P  R  ++
Sbjct: 753  VDEEQHFGVAHKERLKQMRADVHVLTLTATPIPRTLQLALTGVREMSIIATPPVDRLAVR 812

Query: 460  TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            T ++P + +  V E +      G + +++CP++ +        V+ER  +L     + +A
Sbjct: 813  TFVLPFDPV-VVREAILRERFRGGQCFYVCPRLTDID-----KVMERLTTLVPDIRAVVA 866

Query: 520  IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
              HG+M+    E VM +F +G   +L+AT ++E G+D+  A+ III  A+ FGLAQL+QL
Sbjct: 867  --HGQMAPSRLEEVMTAFADGQYDVLVATNIVESGLDIPRANTIIIHRADMFGLAQLYQL 924

Query: 580  RGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
            RGRVGR        L   P   +SK +  RL V++  +    GF +A  DL  R  G +L
Sbjct: 925  RGRVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQTLDTLGAGFTLASHDLDIRGAGNLL 984

Query: 635  GIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            G +QSG         EL+  LLE A   A+ 
Sbjct: 985  GDEQSGHI--KEVGIELYQQLLEEAVAAARE 1013


>gi|2073486|emb|CAA72474.1| transcription repair coupling factor [Rickettsia prowazekii]
          Length = 989

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 135/455 (29%), Positives = 235/455 (51%), Gaps = 23/455 (5%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +    + +    + L+ +  + K  I  PI ++ +   K   N PFS T+ Q +AI DI 
Sbjct: 399 KAKLKNRIKEISLHLIQIAAKRKLNISTPIELDLEAYDKFCANFPFSETEDQLTAINDIR 458

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----GQAVIMAPIGILAQQHYEFI 341
           +D++    M R++ GDVG GKT VA+ A+    ++      Q  ++ P  IL  QH+   
Sbjct: 459 EDLTNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEYLPQVAVVVPTTILCSQHFSRF 518

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            +  +   + ++ ++  +           +A G+ +IIIGTHAL   + +++ L L+I+D
Sbjct: 519 IERFKGFGLNIKQLSSVISSKEANIIRLELASGKINIIIGTHALLHKNTKFFNLKLLIID 578

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+  FGV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  ++T 
Sbjct: 579 EEQHFGVSQKEFLKSLKSSTHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTS 638

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           ++P + +  + + L      G +++++ P+I++ ++   +        +    +  IA  
Sbjct: 639 VMPFDPV-IIRDALLREHFRGGRSFYVAPRIKDMEDIEKQ-----LKQIVPELSYKIA-- 690

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M+    + VM  F  G   +LI+TT+IE GID+ +A+ +II  A+  GL+QL+QLRG
Sbjct: 691 HGKMTPSKIDEVMSEFYVGKFDILISTTIIESGIDIAEANTMIIHKADTLGLSQLYQLRG 750

Query: 582 RVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636
           R+GRG+      L    +  ++ +S  RL +++N+     GF IA  D   R  G ++G 
Sbjct: 751 RIGRGKIRGYAYLTVASNKKITSHSLRRLEIIQNSCSLGSGFTIASHDADLRGFGNLIGE 810

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           +QSG         EL+  +LE        +L  DP
Sbjct: 811 EQSGQI--KEVGTELYQEMLEEQ----IALLKDDP 839


>gi|15604448|ref|NP_220966.1| transcription-repair coupling factor [Rickettsia prowazekii str.
           Madrid E]
 gi|6226643|sp|O05955|MFD_RICPR RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|3861142|emb|CAA15042.1| TRANSCRIPTION-REPAIR COUPLING FACTOR (mfd) [Rickettsia prowazekii]
 gi|292572220|gb|ADE30135.1| Transcription-repair coupling factor [Rickettsia prowazekii Rp22]
          Length = 1120

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 135/455 (29%), Positives = 235/455 (51%), Gaps = 23/455 (5%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +    + +    + L+ +  + K  I  PI ++ +   K   N PFS T+ Q +AI DI 
Sbjct: 530 KAKLKNRIKEISLHLIQIAAKRKLNISTPIELDLEAYDKFCANFPFSETEDQLTAINDIR 589

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----GQAVIMAPIGILAQQHYEFI 341
           +D++    M R++ GDVG GKT VA+ A+    ++      Q  ++ P  IL  QH+   
Sbjct: 590 EDLTNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEYLPQVAVVVPTTILCSQHFSRF 649

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            +  +   + ++ ++  +           +A G+ +IIIGTHAL   + +++ L L+I+D
Sbjct: 650 IERFKGFGLNIKQLSSVISSKEANIIRLELASGKINIIIGTHALLHKNTKFFNLKLLIID 709

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+  FGV Q+  L    ++ HVL M+ATPIPRTL ++  G  ++S I   P  R  ++T 
Sbjct: 710 EEQHFGVSQKEFLKSLKSSTHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTS 769

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           ++P + +  + + L      G +++++ P+I++ ++   +        +    +  IA  
Sbjct: 770 VMPFDPV-IIRDALLREHFRGGRSFYVAPRIKDMEDIEKQ-----LKQIVPELSYKIA-- 821

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG+M+    + VM  F  G   +LI+TT+IE GID+ +A+ +II  A+  GL+QL+QLRG
Sbjct: 822 HGKMTPSKIDEVMSEFYVGKFDILISTTIIESGIDIAEANTMIIHKADTLGLSQLYQLRG 881

Query: 582 RVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGI 636
           R+GRG+      L    +  ++ +S  RL +++N+     GF IA  D   R  G ++G 
Sbjct: 882 RIGRGKIRGYAYLTVASNKKITSHSLRRLEIIQNSCSLGSGFTIASHDADLRGFGNLIGE 941

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           +QSG         EL+  +LE        +L  DP
Sbjct: 942 EQSGQI--KEVGTELYQEMLEEQ----IALLKDDP 970


>gi|329936750|ref|ZP_08286457.1| ATP-dependent DNA helicase RecG [Streptomyces griseoaurantiacus
           M045]
 gi|329303980|gb|EGG47863.1| ATP-dependent DNA helicase RecG [Streptomyces griseoaurantiacus
           M045]
          Length = 989

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 154/430 (35%), Positives = 246/430 (57%), Gaps = 33/430 (7%)

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQI 350
             +  T+VAL AM A V+ GGQA ++AP  +LAQQH+  + +                  
Sbjct: 562 TVTHNTMVALRAMLAVVDCGGQAAMLAPTEVLAQQHHRSVTEMMGDLAQGGMLGGAEHAT 621

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
            V ++TG+M  A RR+AL  +  G+A I+IGTHAL +D+++++ L LV+VDEQHRFGV+Q
Sbjct: 622 KVVLLTGSMGTAARRQALLDLVTGEAGIVIGTHALIEDAVRFHDLGLVVVDEQHRFGVEQ 681

Query: 411 RLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467
           R  L  +    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI + ++P     
Sbjct: 682 RDALRGKGEQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKP 741

Query: 468 --IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR------------SVVERFNSLHEH 513
             +    ER++  +  G +AY +CP+I ++ +   +            +V++    L   
Sbjct: 742 HFLARAWERVREEVENGHQAYVVCPRIGDEADEVRKKAAAEGERRPPLAVLDVAEQLVAG 801

Query: 514 FTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 + ++HGRM   DK++VM  F  G   +L+ATTVIEVG++V +A+ ++I +A+ F
Sbjct: 802 PLRGLRVEVLHGRMPPEDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRF 861

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           G++QLHQLRGRVGRG     C+L+   P +  +  RL  +  T DGF ++  DL+QR+EG
Sbjct: 862 GVSQLHQLRGRVGRGAAPGLCLLVTEMPEASAARQRLGAVAATLDGFELSRIDLEQRREG 921

Query: 632 EILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQY 690
           ++LG  QSG      +      + ++  AR++A  ++  DP L SV   ++R  L     
Sbjct: 922 DVLGQAQSGARSSLRVLAVIEDEEIIAEARQEATELVAADPALESVP--ALRTALDALLD 979

Query: 691 NEAFQFIRAG 700
            +  +++  G
Sbjct: 980 EDRERYLDKG 989



 Score =  229 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 141/377 (37%), Gaps = 37/377 (9%)

Query: 3   PSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKIS 62
           P+   PL  PL +   +G   +  +++ +           DLL ++P  + +R     ++
Sbjct: 5   PALDEPLKQPLRSV--LGPATAKVMAEHL-----GLHTVGDLLHHYPRRYEERGQLTHLA 57

Query: 63  EISEERIVTITGYISQHS-------SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKN 115
           ++  +  VT+   ++               K +  ++ + DG+G + L+FF         
Sbjct: 58  DLPMDEHVTVVAQVADARLHTFASCRAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHK 117

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNF------PLIEAVYSLPTGLSVD 169
               G +   +GK+     R+ + HP Y     +            +  +Y     +   
Sbjct: 118 ELLPGTRAMFSGKVSVFNRRLQLAHPAYELLRGEGAEEAVDSWAGALIPLYPATAKMESW 177

Query: 170 LFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
              K +   L       + + + L   +   ++ EA   IH PR   D E    AR RL 
Sbjct: 178 KLAKAVQTVLPSAQEALDPLPESLRAGRGLATLPEALVKIHRPRTRADVE---DARARLK 234

Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDM 288
           +DE    Q+AL   R    +   +P     +         +PF+ T+ Q +  ++I  D+
Sbjct: 235 WDEAFVLQVALARRRHDDAQLRAVPRKPRAEGLLTAFDARLPFTLTEGQRTVSREIFDDL 294

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
           +  + M R+LQG+VGSGK        A  ++    A+++ P G         +       
Sbjct: 295 ATAHPMHRLLQGEVGSGK--------AQPLD----ALVLTPTGFRPMGGIR-VGDEVVVP 341

Query: 349 QIIVEIITGNMPQAHRR 365
              V  + G  PQ  R 
Sbjct: 342 GGEVAPVDGVFPQGERD 358


>gi|88856044|ref|ZP_01130705.1| transcription-repair coupling factor [marine actinobacterium
            PHSC20C1]
 gi|88814612|gb|EAR24473.1| transcription-repair coupling factor [marine actinobacterium
            PHSC20C1]
          Length = 1202

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 136/485 (28%), Positives = 233/485 (48%), Gaps = 24/485 (4%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W++   +       +A ++  L          G   + +    +++     F+ T  Q 
Sbjct: 589  DWSAAKTKARKAVRDIAVELVKLY--SARMASRGHAFSPDTPWQRELEEAFAFAETPDQL 646

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM     M R+L GDVG GKT VA+ A   AV+ G Q  ++ P  +L +QH 
Sbjct: 647  TTIDEVKADMQSPVPMDRLLSGDVGYGKTEVAVRAAFKAVQDGKQVAMIVPTTLLVRQHM 706

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E          + +  ++        R+ L  +  G   ++IGTH L   +I +  L LV
Sbjct: 707  ETFADRFAGFPVHLRALSRFQTDREARETLAGLTDGTVDVVIGTHRLLSKNIAFKDLGLV 766

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L +  T   +L MTATPIPRTL +   G  ++S +   P  R PI
Sbjct: 767  IIDEEQRFGVEHKDALKKLKTNVDILAMTATPIPRTLEMAVTGIREMSTLATPPEDRHPI 826

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             + + P +   +V   ++  L    + +++  ++          V  +   L     + I
Sbjct: 827  LSFVGPYSER-QVSAAIRRELLREGQIFYVHNRVSSIN-----RVAAKLAELVPD--ARI 878

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG++ +   E VM  F      +L++TT+IE G+D+ +A+ +II+ A+ +GL+QLHQ
Sbjct: 879  AVAHGQLPEAVLEQVMVDFWERKFDVLVSTTIIETGLDIANANTLIIDRADKYGLSQLHQ 938

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY    PLS+ ++ RL  +    +   G  IA +DL+ R  G +
Sbjct: 939  LRGRVGRGRERAYAYFLYDEEKPLSETAHERLDTIAANNELGAGMQIALKDLEIRGAGNL 998

Query: 634  LGIKQSGMP---KFLIAQPELHDSL------LEIARKDAKHILTQDPDLTSVRGQSIRIL 684
            LG +QSG      F +    + +++      +   + + +  L  D ++     +S R+ 
Sbjct: 999  LGGEQSGHIAGVGFDLYLRMIGEAVSTFRGDVAEGQTELRLELPVDANIPEDYVESERLR 1058

Query: 685  LYLYQ 689
            L  YQ
Sbjct: 1059 LEAYQ 1063


>gi|317124068|ref|YP_004098180.1| transcription-repair coupling factor [Intrasporangium calvum DSM
            43043]
 gi|315588156|gb|ADU47453.1| transcription-repair coupling factor [Intrasporangium calvum DSM
            43043]
          Length = 1208

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 144/503 (28%), Positives = 242/503 (48%), Gaps = 34/503 (6%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +WT        Y + +A  +  L   +Q     G   + +    +++     +  T  Q 
Sbjct: 595  DWTRTKSRAKRYVKQIAADLIRLYSARQA--TKGHAFSADTPWQRELEDAFAYVETPDQL 652

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S+I ++  DM ++  M R++ GDVG GKT +A+ A   A++ G Q  ++ P  +L  QH 
Sbjct: 653  SSIDEVKADMEKQVPMDRLICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVSQHL 712

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +          + V+ ++        R+ L+ +A G   ++IGTH L    IQ+  L LV
Sbjct: 713  QTFSDRYAQFPVTVKALSRFQTDKEAREVLDGLARGTIDLVIGTHRLLAKDIQFKDLGLV 772

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  L    TA  VL M+ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 773  VVDEEQRFGVEHKELLKTMRTAVDVLSMSATPIPRTLEMAVTGIREMSTLATPPEERHPV 832

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   ++   ++  L    + ++I  ++   +++       R   L     + I
Sbjct: 833  LTFVGGYDE-KQITAAIRRELLREGQVFFIHNKVSSIEKAAL-----RLRELVPE--ARI 884

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
               HG+M +   E V++ F      +L+ TT++E G+D+ +A+ +I+E A+  GL+QLHQ
Sbjct: 885  TTAHGKMGEHRLEQVVEDFWQKRSDVLVCTTIVETGLDISNANTLIVERADLLGLSQLHQ 944

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  PL++ ++ RL  + +  D   G  +A +DL+ R  G +
Sbjct: 945  LRGRVGRGRERAYAYFLYPPEKPLTETAHDRLRTIASHTDLGSGMDVAMKDLEIRGAGNL 1004

Query: 634  LGIKQSGMPKFLIAQPELHDSLL-----------EIARKDAKHILTQDPDL--TSVRGQS 680
            LG +QSG         +L+  L+           E A  + K  L  D  L    V G+ 
Sbjct: 1005 LGGEQSGHI--AGVGFDLYVRLIGEAVADFRGDGETAPAEIKIELPVDAHLPHDYVPGER 1062

Query: 681  IRIL----LYLYQYNEAFQFIRA 699
            +R+     L   + +EA   I A
Sbjct: 1063 LRLEAYKKLATVESDEAVDEIEA 1085


>gi|309812806|ref|ZP_07706544.1| transcription-repair coupling factor [Dermacoccus sp. Ellin185]
 gi|308433223|gb|EFP57117.1| transcription-repair coupling factor [Dermacoccus sp. Ellin185]
          Length = 1209

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 127/449 (28%), Positives = 225/449 (50%), Gaps = 17/449 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +   +   + + +AG++  L   +Q     G     +    +++     +  T  Q 
Sbjct: 592  DWAATKSKARRHVKQIAGELIRLYSARQA--TPGHAFAPDTPWQRELEDAFAYVETPDQL 649

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S+I+++  DM +   M R++ GDVG GKT +A+ A   AV+   Q  ++ P  +L +QHY
Sbjct: 650  SSIEEVKADMEKTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDSKQVAVLVPTTLLVKQHY 709

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + +  ++        R+ L  +  G   ++IGTH L    I++  L LV
Sbjct: 710  QTFAERYAGFPVKLASLSRFQSDKEAREVLAGLKDGSIDLVIGTHRLLSKEIEFKDLGLV 769

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ + +L Q  TA  VL M+ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 770  IVDEEQRFGVEHKEQLKQMRTAVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPV 829

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   ++   ++  L    + +++  ++   +         R   L     + +
Sbjct: 830  LTFVGAYDE-KQLTAAIRRELMREGQVFYVHNKVGSIE-----KQAARIRELVPE--ARV 881

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A  HG+M +   E V+  F      +L++TT++E G+D+ +A+ +I+E A+  GL+QLHQ
Sbjct: 882  ATAHGKMGEARLEEVVVDFWERKFDVLVSTTIVETGLDIANANTLIVERADQLGLSQLHQ 941

Query: 579  LRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    ++    PL++ ++ RL  + +  D   G  IA +DL+ R  G +
Sbjct: 942  LRGRVGRGRERAYAYFMFPAEKPLTETAHDRLQTIASNTDLGAGMQIAMKDLEIRGAGNL 1001

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
            LG +QSG         +L+  ++  A  D
Sbjct: 1002 LGGEQSGHI--AGVGFDLYVRMVGEAVAD 1028


>gi|229819510|ref|YP_002881036.1| transcription-repair coupling factor [Beutenbergia cavernae DSM
            12333]
 gi|229565423|gb|ACQ79274.1| transcription-repair coupling factor [Beutenbergia cavernae DSM
            12333]
          Length = 1205

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 134/483 (27%), Positives = 229/483 (47%), Gaps = 17/483 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W             +AG++  L          G   + +    +++    P   T  Q 
Sbjct: 595  DWAKTKGRARKAVREIAGELIRLY--SARMATQGFAFSPDTPWQRELEDAFPHIETPDQV 652

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
              I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH+
Sbjct: 653  VTIDEVKADMEKSVPMDRLVCGDVGYGKTEIAIRAAFKAVQDGKQVAVLVPTTLLVQQHF 712

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +      + V+ ++     A      E +  G   ++IGTH L    +++  L LV
Sbjct: 713  ETFSERYAGFPVTVKALSRFQTDAEATAVREGVQDGSVDVVIGTHRLLTGEVRFKDLGLV 772

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            +VDE+ RFGV+ +  L Q  T   VL M+ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 773  VVDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPV 832

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       ++   ++  L    + +++  ++E  +         R   L     + I
Sbjct: 833  LTFVGAYEE-KQIAAAIRRELLREGQVFYVHNRVESIE-----RAAARLQELVPE--ARI 884

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++   E V+  F      +L+ TT+IE G+D+ +A+ +I+E A+  GL+QLHQ
Sbjct: 885  AVAHGKMNEHQLERVIVDFWEKRFDVLVCTTIIETGLDISNANTLILERADVLGLSQLHQ 944

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  PL++ ++ RL+ +    D   G  +A +DL+ R  G +
Sbjct: 945  LRGRVGRGRERAYSYFLYPPEKPLTETAHDRLATIAANTDLGSGMQVALKDLEIRGAGNL 1004

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            LG +QSG         +L+  ++  A    +   T+D    ++       + + Y  +E 
Sbjct: 1005 LGGEQSGHI--AGVGFDLYVRMVSEAVARFRGEETEDITDVTIELPIDAHVPHDYIAHER 1062

Query: 694  FQF 696
             + 
Sbjct: 1063 LRL 1065


>gi|296393668|ref|YP_003658552.1| transcription-repair coupling factor [Segniliparus rotundus DSM
            44985]
 gi|296180815|gb|ADG97721.1| transcription-repair coupling factor [Segniliparus rotundus DSM
            44985]
          Length = 1214

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 130/438 (29%), Positives = 219/438 (50%), Gaps = 15/438 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W +  R+       +A ++  L   +Q     G     +     ++      +PT  Q 
Sbjct: 590  DWATTKRQARKAVREVASELVRLYAARQSA--KGHAFGPDSPWQSELEGAFAHAPTPDQL 647

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM ++  M R++ GDVG GKT +A+ A   AV+ G Q V++AP  +LA QH 
Sbjct: 648  TTIGEVKADMEREVPMDRVVCGDVGFGKTEIAVRAAFKAVQDGKQVVVLAPTTLLADQHL 707

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V+ ++     A  +  + ++A GQ  ++IGTH + Q  +++  L LV
Sbjct: 708  RTFSERMAPFPVTVKGLSRFTDPAESKDTVAKVADGQVDVLIGTHRVLQSKVKFKDLGLV 767

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +        VL ++ATPIPRTL ++  G  D+S I   P  R P+
Sbjct: 768  IVDEEQRFGVEHKEHIKALRVNVDVLTLSATPIPRTLEMSLTGIRDMSTILTPPEERFPV 827

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   L+  L    + ++I  ++             R   L     + +
Sbjct: 828  LTYVGAHDE-KQVAAALRRELVRDGQVFYIHNRVSSID-----KTAARLKELVPE--ARV 879

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            AI HG+M +   E+  ++F  G   +L+ TT++E G+D+ +A+ +++E A+  GLAQLHQ
Sbjct: 880  AIAHGQMGEEQLEATAEAFWRGEHDILVCTTIVESGLDIANANTLVVERADTLGLAQLHQ 939

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P   LS+ ++ RL+ +        G  +A  DL+ R  G +
Sbjct: 940  LRGRVGRGGERAFAYFLYDPERSLSETAHERLATIAQHSSLGSGMAVAMRDLEIRGAGNV 999

Query: 634  LGIKQSGMPKFLIAQPEL 651
            LG +QSG    +     +
Sbjct: 1000 LGHEQSGHIAGVGFDLYI 1017


>gi|323697782|ref|ZP_08109694.1| transcription-repair coupling factor [Desulfovibrio sp. ND132]
 gi|323457714|gb|EGB13579.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
           ND132]
          Length = 1161

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 134/431 (31%), Positives = 216/431 (50%), Gaps = 21/431 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLM-RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           W     +     E +A ++  +   R+  K     P++   ++  +      F  T  QE
Sbjct: 561 WAKTTAKVRKAIEKIALELVEMYAFRRVAKGYGYGPLD---EMYAEFEATFGFEETPDQE 617

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            A+ D+ +DM +   M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QHY
Sbjct: 618 KAVNDVFRDMEKAEPMDRLVCGDVGFGKTEVALRAAFRAALEGRQTALLCPTTVLAEQHY 677

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           +   K  +   + V +++  +    ++  LE  + G+  I+IGTH +    ++   L L+
Sbjct: 678 QTFLKRMEGFPVRVGLLSRFVSAKRQKTVLEAASRGEIDILIGTHRILSKDVELPNLGLL 737

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + KL        VL +TATPIPRTL L+  G   +S I   P  RKP+
Sbjct: 738 ILDEEQRFGVKHKEKLKHFRQNIDVLTLTATPIPRTLQLSLSGIRGLSVIETPPVDRKPV 797

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF--TS 516
           +T I+    + E+   L+  L  G + YW+  ++         + +ER           +
Sbjct: 798 ETGIMEREEL-ELKAVLRRELDRGGQVYWVYNRV---------NGLERVAEFVRGLVPDA 847

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            + + HGRMS+   E  M  F +G   +L+ T+++E G+D  +A+ +I++ A+ FGL QL
Sbjct: 848 RVGMAHGRMSEKGLEEAMRDFWHGELDVLVCTSIVESGLDFPNANTLIVDQAQLFGLGQL 907

Query: 577 HQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQRKEG 631
           +QLRGRVGR E  +    +      +S+    RL +   +     GF +A EDL+ R  G
Sbjct: 908 YQLRGRVGRSERQAYAYFVVPSIKDISEIVRKRLRIILDMDYLGAGFKVAMEDLRLRGAG 967

Query: 632 EILGIKQSGMP 642
            ILG  QSG  
Sbjct: 968 NILGEAQSGQI 978


>gi|303327133|ref|ZP_07357575.1| transcription-repair coupling factor [Desulfovibrio sp. 3_1_syn3]
 gi|302863121|gb|EFL86053.1| transcription-repair coupling factor [Desulfovibrio sp. 3_1_syn3]
          Length = 1146

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 130/428 (30%), Positives = 223/428 (52%), Gaps = 20/428 (4%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             + R A +++ A  + +   RK  K       +  G++  +      F  T  Q  AI+
Sbjct: 557 KEKARKAIEKIAADLVEMYAYRKVAKG---FRYDPPGELYHEFEATFGFEETPDQAKAIQ 613

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           D+L DM +   M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QHY+  +
Sbjct: 614 DVLDDMDRGEPMDRLICGDVGFGKTEVALRAAFRAAAEGRQVALLCPTTVLAEQHYQTFR 673

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
                  + V +++  + +  +++ L+  A GQ  I+IGTH +    ++   L L+++DE
Sbjct: 674 ARLAGFPVNVGLLSRFVTKLRQKEVLKAAAAGQIDILIGTHRILSSDVKLPNLALLVLDE 733

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + RFGV+ + KL        VL +TATPIPRTL L+  G  ++S I   P  RKP+ T +
Sbjct: 734 EQRFGVRHKEKLKALKKNVDVLTLTATPIPRTLQLSMSGIRELSIIETAPQDRKPVATAV 793

Query: 463 IPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           +   R D+ +  + ++  +    + +W+  +++  +      VVE    L     + + +
Sbjct: 794 L---RRDDAVLSKVIEREIEREGQVFWVYNRVQGLE-----RVVEYVRKLAP--QARVGM 843

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG+MS+ + E+ M  F +G   +L+ T+++E G+D   A+ ++++ A+ FGL QL+QLR
Sbjct: 844 AHGQMSETELETTMHKFWHGELDVLVCTSIVESGLDFPRANTLVVDQAQMFGLGQLYQLR 903

Query: 581 GRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
           GRVGR +  +    +      L+  +  RL ++ + +    GF +A EDL+ R  G ILG
Sbjct: 904 GRVGRSDRQAYAFFVVPDAERLTAVAEERLRIIMDMDYLGAGFQVAMEDLRLRGAGNILG 963

Query: 636 IKQSGMPK 643
             QSG   
Sbjct: 964 EVQSGHMS 971


>gi|51473776|ref|YP_067533.1| transcription-repair coupling factor [Rickettsia typhi str.
           Wilmington]
 gi|81856448|sp|Q9AKD5|MFD_RICTY RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|13235382|emb|CAC33732.1| Mfd protein [Rickettsia typhi]
 gi|51460088|gb|AAU04051.1| transcription-repair coupling factor (superfamily helicase II)
           [Rickettsia typhi str. Wilmington]
          Length = 1120

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 232/447 (51%), Gaps = 19/447 (4%)

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
                +    D +    + L+ +  + K  I  PI  + +   K   N PF  T+ Q +A
Sbjct: 525 AWHKSKAKLKDRIKEISLHLIQIAAKRKLNISTPIEFDLEEYDKFCANFPFIETEDQLTA 584

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----GQAVIMAPIGILAQQ 336
           I DI +D++    M R++ GDVG GKT VA+ A+    ++      Q  ++ P  IL  Q
Sbjct: 585 INDIRKDLTNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEYLPQVAVVVPTTILCSQ 644

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H+    +  +   + ++ ++  +           +A G+ +IIIGTH L   +I+++ L 
Sbjct: 645 HFSRFIERFKGFGLNIKQLSSVVSSQEANIIRLELASGKINIIIGTHTLLHKNIKFFNLK 704

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+I+DE+  FGV Q+  L     + HVL M+ATPIPRTL ++  G  ++S I   P  R 
Sbjct: 705 LLIIDEEQHFGVSQKEFLKSLKYSSHVLAMSATPIPRTLQMSLTGLKELSIIATPPLNRL 764

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            ++T ++P + +  + + L      G +++++ P+I++ ++   +        +    + 
Sbjct: 765 EVRTSVMPFDTV-IIRDALLREHFRGGRSFYVVPRIKDMEDIEKQ-----LKQIVPELSY 818

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA  HG+M+    + VM  F  G   +LI+TT+IE GID+ +A+ +II NA+  GL+QL
Sbjct: 819 KIA--HGKMTPSKIDEVMSEFYAGKFDILISTTIIESGIDITEANTMIIHNADTLGLSQL 876

Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEG 631
           +QLRGR+GRG+      L    +  L ++S  RL +++N+     GF IA  D   R  G
Sbjct: 877 YQLRGRIGRGKIRGYAYLTVASNKKLMQHSLRRLEIIQNSCALGSGFTIASHDADLRGFG 936

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEI 658
            ++G +QSG  + + A  EL+  +LE 
Sbjct: 937 NLIGEEQSGQIREVGA--ELYQEMLEE 961


>gi|224128810|ref|XP_002320427.1| predicted protein [Populus trichocarpa]
 gi|222861200|gb|EEE98742.1| predicted protein [Populus trichocarpa]
          Length = 817

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 149/457 (32%), Positives = 243/457 (53%), Gaps = 30/457 (6%)

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERL----AYDELLAGQIALLLMRKQFKKEI 251
           + + P      N    PR       T     R        + +   +  L + +  ++  
Sbjct: 192 RYNLP------NETKRPRTLSKLSDTGAWERRKTKGKVAIQKMVVDLMELYLHRLKQRRP 245

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN-RMLRILQGDVGSGKTLVA 310
             P   +     +     P+ PT  Q+ A  D+ +D++Q+   M R++ GDVG GKT VA
Sbjct: 246 PYP---KTPFMAEFAAQFPYEPTPDQKLAFIDVERDLNQRETPMDRLICGDVGFGKTEVA 302

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALE 369
           L A+   V AG QA+++AP  +LA+QH++ I +++++ + I V +++    +A +   L 
Sbjct: 303 LRAIFCIVSAGKQAMVLAPTIVLAKQHFDVISERFSKYSHIKVALLSRFQSKAEKEMYLN 362

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            I HG   II+GTH+L  + + Y  L L++VDE+ RFGV+Q+ K+    T+  VL ++AT
Sbjct: 363 MIEHGHLDIIVGTHSLLGNRVVYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSAT 422

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L   G  D S I+  P  R PIKT +   N+ D++I  +K  L  G + +++ 
Sbjct: 423 PIPRTLYLALTGFRDASLISTPPPERVPIKTHLSAYNK-DKLISAIKYELDRGGQVFYVL 481

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P+I+  +E          + L + F +  IA+ HG+      E  M+ F  G  K+LI T
Sbjct: 482 PRIKGLEEVK--------DFLEQSFPNVEIAVAHGQQYSKQLEDTMEQFAQGEIKILICT 533

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYT 606
            ++E G+D+ +A+ III++ + FGLAQL+QLRGRVGR ++ +   L Y     L+  +  
Sbjct: 534 NIVESGLDIQNANTIIIQDVQLFGLAQLYQLRGRVGRADKEAHAHLFYPDKSMLTDQALE 593

Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
           RL+ L+   +   GF +AE D+  R  G I G +Q+G
Sbjct: 594 RLAALEECRELGQGFQLAERDMGIRGFGTIFGEQQTG 630


>gi|317499346|ref|ZP_07957616.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893381|gb|EFV15593.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 948

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 116/380 (30%), Positives = 195/380 (51%), Gaps = 10/380 (2%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW           + +A ++  L   +Q K+      + +    ++     P+  T+ Q 
Sbjct: 576 EWKKTKTRVKGQVKDIAEELVQLYALRQAKEG--YVYDKDTVWQKEFEELFPYDETQDQL 633

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +AI D  +DM  K  M R++ GDVG GKT VA+ A   AV+ G Q   + P  ILAQQHY
Sbjct: 634 NAIDDTKRDMESKKIMDRLICGDVGYGKTEVAIRAAFKAVDNGKQVAYLVPTTILAQQHY 693

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
               +   +  I V +++       +++ +E + +G   ++IGTH L    +QY  L L+
Sbjct: 694 NTFAQRFHDYPITVRMMSRFCTAKEQKETIEGLKNGTVDVVIGTHRLLSKDMQYKNLGLL 753

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE+ RFGV  + K+        VL ++ATPIPRTL ++ +G  D+S + E P  R+ I
Sbjct: 754 VIDEEQRFGVTHKEKIKTMKKDVDVLSLSATPIPRTLHMSLIGIRDMSVLEEPPHDRRAI 813

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           +T ++  N  + V E +   ++ G + Y++  ++    E            L     + +
Sbjct: 814 QTYVMEYNE-ELVKEAVYREMTRGGQVYYVYNRVNNIAEVT-----AELQRLLPD--AKV 865

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A  HG+M + + E +M  F N    +L++TT+IE G+D+ + + +II +A   GL+QL+Q
Sbjct: 866 AFAHGQMKERELEEIMMGFMNHEIDVLVSTTIIETGLDIPNVNTMIIHDANQLGLSQLYQ 925

Query: 579 LRGRVGRGEEISSCILLYHP 598
           LRGRVGR    +   L+Y  
Sbjct: 926 LRGRVGRSNRNAFAFLMYKK 945


>gi|256824567|ref|YP_003148527.1| transcription-repair coupling factor Mfd [Kytococcus sedentarius DSM
            20547]
 gi|256687960|gb|ACV05762.1| transcription-repair coupling factor Mfd [Kytococcus sedentarius DSM
            20547]
          Length = 1244

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 133/485 (27%), Positives = 234/485 (48%), Gaps = 19/485 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W+    +   + + +A ++  L          G     +    +++     +  T  Q 
Sbjct: 633  DWSKTKSKARKHVKQIANELIQLY--SARMATQGHAFAPDSPWQRELEDTFAYIETTDQL 690

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            S+I+++  DM +   M R++ GDVG GKT +A+ A   A++   Q  ++ P  +L QQH 
Sbjct: 691  SSIEEVKADMEKSVPMDRLICGDVGYGKTEIAVRAAFKAIQDSKQVAVLVPTTLLVQQHL 750

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V  ++     A  +  +E +  G   ++IGTH L   S+++  L LV
Sbjct: 751  QTFTERYAQFPVTVRALSRFSSDADAKATIEGLRDGSVDLVIGTHRLLSSSVRFKDLGLV 810

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ + +L    TA  VL M+ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 811  IIDEEQRFGVEHKEQLKTLRTAVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPV 870

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +             + +L EG + +++  ++    +        R   L     + I
Sbjct: 871  LTYVGAYEEKQIAAAIHRELLREG-QVFYVHNKVATIDKVAS-----RLRELVPE--ARI 922

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             + HG+M +   E V+  F      +L++TT++E G+D+ +A+ +I++ A+ FGL+QLHQ
Sbjct: 923  EVAHGQMGEHRLEQVVTDFWERKFDVLVSTTIVETGLDIANANTLILDRADTFGLSQLHQ 982

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  PL++ ++ RL  + +  D   G  +A +DL+ R  G +
Sbjct: 983  LRGRVGRGRERAYAYFLYPPEKPLTETAHDRLRTIASHTDLGAGMQVAMKDLEIRGAGNL 1042

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI--RILLYLYQYN 691
            LG +QSG         +L+  ++  A   AK     D +   V+ +      L + Y   
Sbjct: 1043 LGGEQSGHI--AGVGFDLYVRMVGEAVARAKDGTDGDAEPVEVKVELPVDAHLPHDYVPG 1100

Query: 692  EAFQF 696
            E  + 
Sbjct: 1101 ERLRL 1105


>gi|212696071|ref|ZP_03304199.1| hypothetical protein ANHYDRO_00607 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676700|gb|EEB36307.1| hypothetical protein ANHYDRO_00607 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 439

 Score =  309 bits (792), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 153/399 (38%), Positives = 245/399 (61%), Gaps = 12/399 (3%)

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           + ++   +++ +  +++     KIL ++ F  TKSQ +++ +IL D S  N M R+L GD
Sbjct: 1   MQKENSYQDLNLKFDLD-----KILNSLDFKLTKSQYNSLSEILDDCSSSNIMNRLLCGD 55

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VALIAM        QA +M P  +LA Q +E  K   ++  + VE++T +   
Sbjct: 56  VGSGKTIVALIAMIIFSLNSYQACMMVPTEVLAIQQFEKNKNLIESFGLRVELLTSSTKN 115

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
               K  E+I +GQ  I+IGTHAL  D +++  L L++ DEQHRFGV+QR  L +K    
Sbjct: 116 KDSVK--EKIKNGQIDIVIGTHALIVDDVEFKNLKLIVADEQHRFGVRQRQALYEKGNKA 173

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           + L MTATPIPRTL L     + +S+ITE P GR  + T ++ ++  D +  ++   L++
Sbjct: 174 NYLTMTATPIPRTLFLKMKNLLSLSQITELPKGRGQVITELVLMSMEDSLFSKISNFLNQ 233

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           G++ Y +   I+ + E++  ++ +R+ +  +     I  +HG++   +KE+++  F +G 
Sbjct: 234 GRQVYVVSDSIDSEDENSVENLYKRYKT--KFTDKRIEKLHGKLKADEKENILKEFSDGK 291

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +LI+TTVIEVGIDV +A+ ++I NA +FGL+ LHQLRGR+GRGE  S C L+      
Sbjct: 292 IDVLISTTVIEVGIDVSNANCMVIYNANNFGLSSLHQLRGRIGRGEHESFCYLVSKK--- 348

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
            +  ++L+++KN+ DGF IA++DLK R  G+IL   Q G
Sbjct: 349 IDQRSKLNIIKNSNDGFEIAKKDLKLRGAGKILSTIQHG 387


>gi|289763152|ref|ZP_06522530.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis GM
           1503]
 gi|289710658|gb|EFD74674.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis GM
           1503]
          Length = 578

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 150/541 (27%), Positives = 248/541 (45%), Gaps = 58/541 (10%)

Query: 36  ANETRFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYISQHSSFQLQK---RRPY 90
                  DLL ++P S+++   R  I +        +TI   I+   SF ++K   R+  
Sbjct: 24  FGMRTVDDLLRHYPRSYVEGAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNRKCL 83

Query: 91  KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150
           +I +  G  ++T  FF    + +     +  K+ ++G++   K  + + HP ++  +S D
Sbjct: 84  RITVGGGRNKVTATFFN--ADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSPD 141

Query: 151 VNFPLIE--------------------------AVYSLPTGLSVDLFKKIIVEALSRLPV 184
                                             +Y   T +      K + + L  L  
Sbjct: 142 GKNHGTRSLKSIADASKAISGELVVEEFERRFFPIYPASTKVQSWDIFKCVRQVLDVLDR 201

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           + + +  +L  K       EA   I     A+       ARERL +DE +  Q AL+  R
Sbjct: 202 VDDPLPAELRAKHGLIPEDEALRAI---HLAESQSLRERARERLTFDEAVGLQWALVARR 258

Query: 245 KQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
                E G     +    A ++LR +PF  T  Q   +  +   ++    + R+LQG+VG
Sbjct: 259 HGELSESGPSAAWKSNGLAAELLRRLPFELTAGQREVLDVLSDGLAANRPLNRLLQGEVG 318

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI-----------IV 352
           SGKT+VA++AM   V+AG Q  ++AP  +LA QH   I+       +            V
Sbjct: 319 SGKTIVAVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRV 378

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
            ++TG+M    +++    IA GQ  I+IGTHAL Q+++ ++ L +V+VDEQHRFGV+QR 
Sbjct: 379 ALLTGSMTAGQKKQVRAEIASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRD 438

Query: 413 KLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467
           +L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E P GR+PI T +I +    
Sbjct: 439 QLRAKAPAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNVIFVKDKP 498

Query: 468 --IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR---SVVERFNSLHEHFTSSIAIIH 522
             +D    R+    + G++AY + P+I+E  +++ +           L     S+     
Sbjct: 499 AWLDRAWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGVRPSATAEGLFSRLRSAELAEC 558

Query: 523 G 523
           G
Sbjct: 559 G 559


>gi|57239455|ref|YP_180591.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579431|ref|YP_197643.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161534|emb|CAH58461.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58418057|emb|CAI27261.1| Transcription-repair coupling factor [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 1122

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 222/448 (49%), Gaps = 17/448 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D   ++  ++R    +    +IA  L+R     +   G P        +       ++ T
Sbjct: 530 DRLGSTSWQQRQTKLKNHIQKIAKELIRIEAARQLMQGTPFLPNN-TYKNFCDEFAYTET 588

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI+DI  D+S    M R++ GD G GKT VAL A         Q  ++ P  +L 
Sbjct: 589 TDQLQAIQDIENDLSGGKIMNRLICGDAGFGKTEVALRAAFLVAIKNYQVAVIVPTTLLC 648

Query: 335 QQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           +QH+    +  +N   I ++ ++  + +   +K  E I++G  HIIIGTHA+    + ++
Sbjct: 649 KQHFAVFTERFKNFPNIKIQQLSKIVNKHEIKKIKENISYGHTHIIIGTHAILSQDVNFF 708

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L LVI+DE+ +FGV+Q+  L +     HVL ++ATPIPRTL ++  G  + S I   P 
Sbjct: 709 NLSLVIIDEEQQFGVKQKELLKKIKANVHVLSLSATPIPRTLHMSLCGIKNFSLIKTPPK 768

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P+ T  I     + +   +      G + +++CPQI   K  N   +          
Sbjct: 769 NRLPVITYTIHYTD-NTIKNAIIHEYERGGRTFYVCPQINNIKNINDNLI-------RLL 820

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               I I HG++   + E+VM+ F +G   +L+ T++IE G+D+  A+ III NA+ FGL
Sbjct: 821 PDIKIGIAHGQLPSHELENVMNDFLDGKFTVLLTTSIIECGLDIPHANTIIIHNADMFGL 880

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKE 630
           AQL+QL+GRVGR         +    ++  S  RL +++   +   GF ++  D+  R  
Sbjct: 881 AQLYQLKGRVGRSNIKGYAYFILSDNINNISERRLEIIRSIDSINSGFALSLHDMDIRGF 940

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEI 658
           G ++G +QSG  K +    EL+  +LE 
Sbjct: 941 GNLIGEEQSGNIKDI--GIELYQQMLEE 966


>gi|294083797|ref|YP_003550554.1| transcription-repair coupling factor [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663369|gb|ADE38470.1| transcription-repair coupling factor [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 1158

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 139/456 (30%), Positives = 229/456 (50%), Gaps = 17/456 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D    +  + R+A  +     +A  L++   Q       P+     +  +      F  T
Sbjct: 554 DKLGGAAWQARVARIKGRVRIMAEQLIKIAAQRHTAKAEPLLATDGLFAEFCDRFSFVET 613

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q +AI+D++ D++      R++ GDVG GKT VAL A      AG Q  ++AP  +LA
Sbjct: 614 DDQLNAIQDVIDDLASGKASDRLICGDVGFGKTEVALRAAFIVAMAGYQVALVAPTTLLA 673

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH +   +      + + +++     +  ++  E +A G   ++IGTHAL   S+ +  
Sbjct: 674 RQHGKEFTERFAGFPLKLGVLSRMTSTSDAKQIREDLASGDVQVVIGTHALLAKSLSFNN 733

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+IVDE+  FGV Q+ +L +     HVL ++ATPIPRTL +   G  ++S I   P  
Sbjct: 734 LGLLIVDEEQHFGVGQKERLKEMRGDIHVLTLSATPIPRTLQMALSGVREMSLIATPPVD 793

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  ++T + P + +  + E +   +  G + + +CP+I++      + V +R   L    
Sbjct: 794 RLAVRTFVGPWDGV-VLREAILREMFRGGQIFVVCPRIDDL-----QRVYDRVRKLVPD- 846

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I   HGRM   + + VM  F +G   +L++T +IE GID+  A+ +II  A+ FGL+
Sbjct: 847 -ARILSAHGRMPAAELDDVMTKFADGEADILLSTNIIESGIDIPSANTMIIHRADMFGLS 905

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRK 629
           QL+QLRGRVGRG + +   L   P   L+  +  RL V++  +    GF +A  D+  R 
Sbjct: 906 QLYQLRGRVGRGRQRAYAYLTSDPNRILTPQARRRLEVMQTLDTLGAGFTLASYDMDIRG 965

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            G +LG +QSG         EL+  +L  A   AK 
Sbjct: 966 AGNLLGDEQSGH--VREVGVELYQEMLRQAVDAAKA 999


>gi|260906157|ref|ZP_05914479.1| transcription-repair coupling factor [Brevibacterium linens BL2]
          Length = 1197

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/438 (28%), Positives = 220/438 (50%), Gaps = 15/438 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W++   +     + +AG++  L   +Q           +    +++     +  T  Q 
Sbjct: 590  DWSTTKAKARKAVKEIAGELVRLYSARQATVGHTY--GPDTPWQRELEDAFHYVETADQL 647

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   A++ G Q  ++ P  +L QQH 
Sbjct: 648  TTIDEVKGDMEKAVPMDRLICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHL 707

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            E   +      + V  ++    +    K +E +A G+  ++IGTH L    +++  L LV
Sbjct: 708  ETFAERYSGFPVTVGALSRFQTKKESDKVVEDLAAGKLDLVIGTHRLLSGEVRFKSLGLV 767

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 768  IIDEEQRFGVEHKETLKAMRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPV 827

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +       ++   ++  L    + ++I  ++++ +             L     + I
Sbjct: 828  LTYVGK-KEDKQIKAAIRRELMREGQVFYIHNRVKDIESVAGH-----IAELVPE--ARI 879

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            AI HG+M++   E V+  F      +L+ TT++E GID+ +A+ +II++A+ FGL+QLHQ
Sbjct: 880  AIAHGKMNEQRLEQVIVDFWEKKFDVLVCTTIVETGIDISNANTLIIDHADRFGLSQLHQ 939

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY     L++ ++ RL+ L    +   G  +A +DL+ R  G +
Sbjct: 940  LRGRVGRGRERAYAYFLYPADTTLTETAHDRLTTLAAHTELGAGMQVAMKDLEIRGAGNL 999

Query: 634  LGIKQSGMPKFLIAQPEL 651
            LG +QSG  + +     +
Sbjct: 1000 LGGQQSGQIEGVGFDLYV 1017


>gi|58617486|ref|YP_196685.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
           Gardel]
 gi|58417098|emb|CAI28211.1| Transcription-repair coupling factor [Ehrlichia ruminantium str.
           Gardel]
          Length = 1123

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 223/448 (49%), Gaps = 17/448 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D   ++  ++R    +    +IA  L++     +   G P      I +       ++ T
Sbjct: 531 DRLGSTSWQQRQTKLKNHIQKIAKELIKIEAARQLMQGTPFLPNN-IYKNFCDEFAYTET 589

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI+DI  D+S    M R++ GD G GKT VAL A         Q  ++ P  +L 
Sbjct: 590 TDQLQAIQDIENDLSSGKIMNRLICGDAGFGKTEVALRAAFLVAIKNYQVAVIVPTTLLC 649

Query: 335 QQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           +QH+    +  +N   I ++ ++  + +   +K  E I++G  HIIIGTHA+    + ++
Sbjct: 650 KQHFTVFTERFKNFPNIKIQQLSKIVNKHEIKKIKENISYGHTHIIIGTHAILSQDVNFF 709

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L LVI+DE+ +FGV+Q+  L +     HVL ++ATPIPRTL ++  G  + S I   P 
Sbjct: 710 NLSLVIIDEEQQFGVKQKELLKKIKANVHVLSLSATPIPRTLHMSLCGIKNFSLIKTPPK 769

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P+ T  I     + +   +      G + +++CPQI   K  N   +          
Sbjct: 770 NRLPVITYTIHYTD-NTIKNAIIHEYERGGRTFYVCPQINNIKNINDNLI-------RLL 821

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               I I HG++   + E+VM+ F +G   +L+ T++IE G+D+  A+ III NA+ FGL
Sbjct: 822 PDIKIGIAHGQLPSHELENVMNDFLDGKFTVLLTTSIIECGLDIPHANTIIIHNADMFGL 881

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKE 630
           AQL+QL+GRVGR         +    ++  S  RL +++   +   GF ++  D+  R  
Sbjct: 882 AQLYQLKGRVGRSNIKGYAYFILSDNINNISERRLEIIRSIDSINSGFALSLHDMDIRGF 941

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEI 658
           G ++G +QSG  K +    EL+  +LE 
Sbjct: 942 GNLIGEEQSGNIKDI--GIELYQQMLEE 967


>gi|117929120|ref|YP_873671.1| transcription-repair coupling factor [Acidothermus cellulolyticus
            11B]
 gi|117649583|gb|ABK53685.1| transcription-repair coupling factor [Acidothermus cellulolyticus
            11B]
          Length = 1192

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 139/456 (30%), Positives = 227/456 (49%), Gaps = 18/456 (3%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
                R R A  E+ A  I L   R       G     +    +++    P+  T  Q   
Sbjct: 593  RRKGRARKAVREIAAELIQLYSARMAS---PGHAFGPDTPWQRELEEAFPYVETPDQLRT 649

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            I+++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQHY  
Sbjct: 650  IEEVKADMERPVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLCPTTLLVQQHYAT 709

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
              +   N  ++V+ ++       + + L  +A G   ++IGTH L  D + +  L LVIV
Sbjct: 710  FSERFANFPVVVKPVSRFNTFKEQEEILAGLAAGTVDVVIGTHRLLSDGVVFKDLGLVIV 769

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+ RFGV+ + +L +  T   VL M+ATPIPRTL +   G  ++S I   P  R P+ T
Sbjct: 770  DEEQRFGVEHKERLKRLRTNVDVLTMSATPIPRTLEMAITGIREMSVIQTPPEERHPVLT 829

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             + P +   ++   ++  L    + +++  ++E  +         R   L     + +A+
Sbjct: 830  FVGPFDE-HQIAAAIRRELLREGQVFYVHNRVETIE-----QAAARVRELVPE--ARVAV 881

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+M++   E VM  F      +L+ TT+IE G+D+ +A+ +I+E A+  GL QL+QLR
Sbjct: 882  AHGQMNEDALEQVMIGFWERAFDVLVCTTIIESGLDIPNANTLIVERADLLGLGQLYQLR 941

Query: 581  GRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILG 635
            GRVGRG E       Y    PL++ ++ RL+ +    D   G  IA +DL+ R  G +LG
Sbjct: 942  GRVGRGRERGYAYFCYPADRPLTETAHDRLATIAQHSDLGSGMSIAMKDLEIRGAGNLLG 1001

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
             +QSG         +L+  L+  A  D +   +++P
Sbjct: 1002 GEQSGHI--AEVGFDLYMRLVGEAVADFRGDQSREP 1035


>gi|32490848|ref|NP_871102.1| hypothetical protein WGLp099 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166054|dbj|BAC24245.1| mfd [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 685

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 139/440 (31%), Positives = 223/440 (50%), Gaps = 17/440 (3%)

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
               ++    +       F  T+ Q  AI +++ DM + + M R++ GDVG GKT +A+ 
Sbjct: 124 FSFELKFNKYKLFCNECNFDLTQDQNKAILEVIDDMKKSSVMNRLICGDVGFGKTEIAMR 183

Query: 313 AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           A   A++   Q  ++ P  +L+QQH++  K   +   I + I++  + +  + K ++ I 
Sbjct: 184 AAFIAIQNKKQVSLLTPTTLLSQQHFDNFKLRFKKWPIKISILSRFLNKKEQNKVIKMIL 243

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            G+  I+IGTH + Q  I +  L L+I+DE+HRFGV Q+  +    T   VL +TATPIP
Sbjct: 244 IGEIDILIGTHRILQKDIIWKDLGLLIIDEEHRFGVSQKECIKTVRTGVDVLSLTATPIP 303

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL +   G  D+S I+  P  R P+KT I   N+ D + + +K  LS   + Y++   I
Sbjct: 304 RTLNMAMNGLRDLSIISTPPKYRLPVKTFIYEYNK-DIIKKAIKNELSRKGQIYYLHNNI 362

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               E       +    +       I I H +M     +  M  FK     +L+ T++IE
Sbjct: 363 STINE-----TSKILKKIAPKV--RIKISHSKMCKNLLKKTMQDFKENKFDMLVCTSIIE 415

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSV 610
            GID+ +A+ IIIE A  FGLAQL+QLRGRVGR    +   L       L++NS  RL  
Sbjct: 416 TGIDIANANTIIIEKANQFGLAQLNQLRGRVGRSFRQAYAYLFTSKSNSLNENSKKRLEA 475

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           + +      GF ++  DL+ R  GE+LG KQSG    +     L++ LL+ + K  K   
Sbjct: 476 ISSINKLGSGFSLSINDLEIRGSGELLGSKQSGKINSI--GISLYNKLLKKSIKLIKS-- 531

Query: 668 TQDPDLTSVRGQSIRILLYL 687
            ++  L +++     + L +
Sbjct: 532 GKELSLETIKENFTEVNLNI 551


>gi|195941443|ref|ZP_03086825.1| transcription-repair coupling factor (mfd) [Borrelia burgdorferi
           80a]
          Length = 1125

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 146/465 (31%), Positives = 238/465 (51%), Gaps = 21/465 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + ++        P+  T  Q  
Sbjct: 532 WIKNKANAKKRIEEIADKLIELYSKRESIKGIKYP--EDNELQLLFESEFPYDETPDQIR 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q V+++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVVVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNAETRILKELKIGKIDIIIGTHKILSKKFTCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE      ++++ER         + 
Sbjct: 770 AYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERLT-----PYAR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           +LG +Q G  + +     L  ++L  A +     ++ D +   + 
Sbjct: 940 LLGREQHGEIESIGLDYYL--TMLNKAIEKKMGKISSDEEEVDIE 982


>gi|313680042|ref|YP_004057781.1| transcription factor card [Oceanithermus profundus DSM 14977]
 gi|313152757|gb|ADR36608.1| transcription factor CarD [Oceanithermus profundus DSM 14977]
          Length = 986

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 163/495 (32%), Positives = 254/495 (51%), Gaps = 21/495 (4%)

Query: 197 KSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
           +  P +         P +       +W        A  E LA ++ +L  R+Q       
Sbjct: 376 EQLPLLRRHPGTSDEPPRLSSLGKKDWQRAKARAQADAEALAQRLLVLYARRQQTPGTAY 435

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P   +      I    P + T+ Q  A++D+L+D+   + M R++ GDVG GKT +AL A
Sbjct: 436 PALPDWDPL--IEAGFPHTLTEDQARALEDVLRDLETPHPMDRLVSGDVGFGKTEIALRA 493

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
               V  G Q   +AP  +LA+QHY    +   +  + V +++   P+A  R+  E +A 
Sbjct: 494 AHRVVGHGRQVAYLAPTTLLAEQHYNTFAERFADLPVEVALLSRFTPEAEARRVEEGLAE 553

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G+  ++IGTH L  D +++ +L L+IVDE+HRFGV Q+ ++ + A    VL ++ATPIPR
Sbjct: 554 GRIDVVIGTHRLLSDRVRFRQLGLLIVDEEHRFGVAQKERIKEMAEGLDVLSLSATPIPR 613

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL    +G  D+S I   P GRKPI+TV+ P +    V E +   +  G KA+++  +I 
Sbjct: 614 TLYQALVGLKDVSSIQTPPPGRKPIQTVVAPFD-PALVREAVLFEMERGGKAFYVHDRIA 672

Query: 494 EKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
             +         R   L      + I ++HGRM+D + E VM  F  G   LL+ATT++E
Sbjct: 673 SIEA--------RARYLEVLVPEARIGVVHGRMADREIEEVMRHFARGAFDLLVATTIVE 724

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ +A+ I+IE A+  GLA L+QLRGRVGR E  +   L + P L++ +  RL+ L 
Sbjct: 725 SGLDIPEANTILIERADRLGLASLYQLRGRVGRREREAYAYLFHPPRLTEAAERRLAALA 784

Query: 613 NTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA-RKDAKHILT 668
           +  D   G  +AE+D++ R  G +LG +Q G         E++  LL  A RK     + 
Sbjct: 785 DLTDLGSGHRLAEKDMEIRGVGNLLGPQQHGH--VQAVSFEVYTELLAEAIRKLKGEEVP 842

Query: 669 QDPDLTSVRGQSIRI 683
           + P  T     S RI
Sbjct: 843 KPPHTTLDLAVSARI 857


>gi|226321322|ref|ZP_03796849.1| transcription-repair coupling factor [Borrelia burgdorferi Bol26]
 gi|226233118|gb|EEH31870.1| transcription-repair coupling factor [Borrelia burgdorferi Bol26]
          Length = 1125

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 238/465 (51%), Gaps = 21/465 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + ++        P+  T  Q  
Sbjct: 532 WIKNKANAKKRIEEIADKLIELYSKRESIKGIKYP--EDNELQLLFESEFPYDETPDQIR 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNAETRILKELKIGKIDIIIGTHKILSKKFTCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE      ++++ER         + 
Sbjct: 770 AYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERLT-----PYAR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           +LG +Q G  + +     L  ++L  A +     ++ D +   + 
Sbjct: 940 LLGREQHGEIESIGLDYYL--TMLNKAIEKKMGKISSDEEEVDIE 982


>gi|50955304|ref|YP_062592.1| transcription-repair coupling factor [Leifsonia xyli subsp. xyli str.
            CTCB07]
 gi|50951786|gb|AAT89487.1| transcription-repair coupling factor [Leifsonia xyli subsp. xyli str.
            CTCB07]
          Length = 1204

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 128/433 (29%), Positives = 218/433 (50%), Gaps = 15/433 (3%)

Query: 242  LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
             +        G     +    +++    PF+ T  Q   I ++  DM +   M R++ GD
Sbjct: 620  KLYSARMSSKGHSFAPDTPWQRELEEAFPFAETPDQLQTIDEVKADMERPIPMDRLISGD 679

Query: 302  VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            VG GKT +A+ A   AV+ G Q  ++ P  +L +QH E   +      + +  ++     
Sbjct: 680  VGFGKTEIAIRAAFKAVQDGKQVAVLVPTTLLVKQHAETFMERFAGFPVHLRQLSRFQTD 739

Query: 362  AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
               R+ L  +A G   I+IGTH +  D + +  L LV++DE+ RFGV+ + +L +  T  
Sbjct: 740  REARETLRGLAGGTVDIVIGTHRILSDGVTFKDLGLVVIDEEQRFGVEHKDRLKKLKTNV 799

Query: 422  HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             +L M+ATPIPRTL +   G  ++S +   P  R PI T + P +   +V   ++  L  
Sbjct: 800  DILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFVGPYSER-QVGAAIRRELLR 858

Query: 482  GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
              + +++  ++         SV  +   L     + IA  HG+M++   E V+  F    
Sbjct: 859  EGQVFFVHNRVGSI-----TSVAAKLAELVPE--ARIAYAHGKMNEHALEQVVVDFWERK 911

Query: 542  CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPP 599
              +L++TT+IE G+D+ +A+ III+ A+ +GL+QLHQLRGRVGRG E +    L+  + P
Sbjct: 912  FDVLVSTTIIETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLWDENKP 971

Query: 600  LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            LS+ ++ RLS +    D   G  +A +DL+ R  G +LG +QSG         +L+  ++
Sbjct: 972  LSETAHDRLSTIAANNDLGSGMQVALKDLEIRGAGNLLGGEQSGHI--AGVGFDLYLRMI 1029

Query: 657  EIARKDAKHILTQ 669
              A    +  + +
Sbjct: 1030 GEAVSAFRGEVAE 1042


>gi|269122841|ref|YP_003305418.1| DEAD/DEAH box helicase domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268314167|gb|ACZ00541.1| DEAD/DEAH box helicase domain protein [Streptobacillus moniliformis
           DSM 12112]
          Length = 900

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 145/433 (33%), Positives = 225/433 (51%), Gaps = 14/433 (3%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             RE+   +++      L+ ++ + K    +P+  +    ++      F+ T  Q+ A++
Sbjct: 353 KRREKRIREDVEKFAQELINIQAKRKLVRKLPLIKDTLWQEEFEEKFSFNLTWDQQKAVE 412

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           DI  D+     M RIL GDVG GKT VA+ A   A+E G Q  I+AP  +LA QH+E   
Sbjct: 413 DIKHDLESGRLMDRILVGDVGYGKTEVAMRAAFKAIENGYQCAILAPTTVLANQHFERCH 472

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           K  ++  I V  ++  +   +    L+ + +G+  ++IGTH L  D +++  L L+I+DE
Sbjct: 473 KRFEDFGISVNNLSR-LTGKNTDDVLDGLKNGKIDLVIGTHRLLGDDVKFKNLGLLIIDE 531

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + +FGV  + K+ ++    H+L ++ATPIPRTL L  LG  DIS I   P  R PI T  
Sbjct: 532 EQKFGVNAKEKIKKRKEDIHLLTLSATPIPRTLNLALLGIRDISLIQSSPMDRLPIITQK 591

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
           I  + I +VI      LS   + ++I   ++   E       +    L   F  +I  IH
Sbjct: 592 IQEDEIKKVI---LKELSRDGQVFYITNNVKGMAEKQ-----KSLKKLMPDFV-NIEYIH 642

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G++S  + +  ++ F  G   +LIA+T++E GID+ +A+ IIIEN    GL+Q++QLRGR
Sbjct: 643 GKLSPREIKQKINDFDEGKFDILIASTIVENGIDITNANSIIIENYTSLGLSQIYQLRGR 702

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE----DGFLIAEEDLKQRKEGEILGIKQ 638
           VGRG+    C LL     SK    +   L+  E     G+L++ EDL  R  GEILG KQ
Sbjct: 703 VGRGKRQGYCYLLDSEYKSKKGKEKDKSLEKIEGVEGGGYLLSLEDLNIRGAGEILGEKQ 762

Query: 639 SGMPKFLIAQPEL 651
            G          L
Sbjct: 763 HGAIDMFGYDLYL 775


>gi|332671526|ref|YP_004454534.1| transcription-repair coupling factor [Cellulomonas fimi ATCC 484]
 gi|332340564|gb|AEE47147.1| transcription-repair coupling factor [Cellulomonas fimi ATCC 484]
          Length = 1222

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 121/438 (27%), Positives = 215/438 (49%), Gaps = 15/438 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W           + +A ++  L          G     +    +++     +  T  Q 
Sbjct: 613  DWAKTKGRARRAVKEIAAELIRLY--SARMATPGHAFGADTPWQRELEDAFAYVETPDQL 670

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q  ++ P  +L QQH 
Sbjct: 671  ATIDEVKADMEKSVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHL 730

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
            +   +      + V+ ++        ++ +  +A G   I+IGTH L    +++  L LV
Sbjct: 731  DTFSERYSAFPVTVKALSRFQSDKESKEVVAGLADGSVDIVIGTHRLITGEVRFKDLGLV 790

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            I+DE+ RFGV+ +  L    T   VL M+ATPIPRTL +   G  ++S +   P  R P+
Sbjct: 791  IIDEEQRFGVEHKETLKALRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPV 850

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   ++   ++  L    + +++  +++  +         R + L     + +
Sbjct: 851  LTFVGAYDE-KQISAAVRRELLREGQVFYVHNKVDSIE-----RAASRISELVPE--ARV 902

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M++   E V+  F      +L+ TT++E G+D+ +A+ +I+E A+  GL+QLHQ
Sbjct: 903  AVAHGKMNEHQLERVIVDFWEKRFDVLVCTTIVETGLDISNANTLILERADLLGLSQLHQ 962

Query: 579  LRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P  PL++ ++ RL  +    D   G  +A +DL+ R  G +
Sbjct: 963  LRGRVGRGRERAYAYFLYPPEKPLTETAHDRLQTIAANTDLGAGMAVAMKDLEIRGAGNL 1022

Query: 634  LGIKQSGMPKFLIAQPEL 651
            LG +QSG  + +     +
Sbjct: 1023 LGGEQSGHIEGVGFDLYI 1040


>gi|218249390|ref|YP_002375126.1| transcription-repair coupling factor [Borrelia burgdorferi ZS7]
 gi|218164578|gb|ACK74639.1| transcription-repair coupling factor [Borrelia burgdorferi ZS7]
          Length = 1125

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 144/465 (30%), Positives = 237/465 (50%), Gaps = 21/465 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + ++        P+  T  Q  
Sbjct: 532 WIKNKANAKKRIEEIADKLIELYSKRESIKGIKYP--EDNELQLLFESEFPYDETPDQIR 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNAETRILKELKIGKIDIIIGTHKILSKKFTCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE      ++++ER         + 
Sbjct: 770 AYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEEL--YYLKTLIERLT-----PYAR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ + + III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNVNTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           +LG +Q G  + +     L  ++L  A +     ++ D +   + 
Sbjct: 940 LLGREQHGEIESIGLDYYL--TMLNKAIEKKMGKISSDEEEVDIE 982


>gi|322379145|ref|ZP_08053542.1| transcription-repair coupling factor [Helicobacter suis HS1]
 gi|322380425|ref|ZP_08054627.1| transcription-repair coupling factor [Helicobacter suis HS5]
 gi|321147136|gb|EFX41834.1| transcription-repair coupling factor [Helicobacter suis HS5]
 gi|321148441|gb|EFX42944.1| transcription-repair coupling factor [Helicobacter suis HS1]
          Length = 986

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 154/546 (28%), Positives = 254/546 (46%), Gaps = 43/546 (7%)

Query: 162 LPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT 221
           L  GL        + + ++      + +   LL  ++   + E +   + P   K  + +
Sbjct: 373 LFKGLVQQSIFGSVRDFIALEYQNEDML---LLPVENL-HLVERYIANNFPVLDKLGKSS 428

Query: 222 SPARERLAYDELLAG--QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
               +   + E+L    QI  L  ++   +     IN +    +   +   F+ T  QES
Sbjct: 429 FIKLKAKVHAEILEMASQIINLAAKRYLLEGE--KINADSAKLKAFKQACGFTLTPDQES 486

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           +I  IL+D++Q   M R+L GDVG GKT VA+ A+ A   +G Q+ +  P  +L  QH+ 
Sbjct: 487 SITAILEDLAQGRVMDRLLNGDVGFGKTEVAMHAIYAIFLSGKQSAMFVPTTLLCAQHFN 546

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            ++   +   + V  +        +++ LE I  G+  +++GTHAL     ++  L LV+
Sbjct: 547 TLQARLEPFNLKVAKLDRFS--KDKKEVLEGIKEGRISVVVGTHALL--GAKFKDLGLVV 602

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+H+FGV+Q+  +   +   H L M+ATPIPRTL +       +S +T  PA RKP +
Sbjct: 603 VDEEHKFGVKQKEAIKILSHQVHSLSMSATPIPRTLSMALSKIKGVSTLTTPPANRKPSR 662

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +        + E +   L    + ++I   IE   +   +        L  +    + 
Sbjct: 663 TFVKEKTN-PLLKEIILRELRRKGQVFYIHNHIESMPKVKQK-----LLELLPNL--RVE 714

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I+H +    + E +M +F  G  ++L+ T+++E GI + +A+ IIIE A+ FGLA LHQL
Sbjct: 715 ILHSKTPAKEVEQIMVNFAQGHFEVLLCTSIVESGIHLPNANTIIIEQADRFGLADLHQL 774

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEIL 634
           RGRVGRG +   C  L      L + +  RL  L+       G  IA  DL+ R  G  L
Sbjct: 775 RGRVGRGNKEGFCYYLVEDKNTLGEQASKRLLALEKNSYLGSGASIAMHDLEIRGGGNFL 834

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ--------------DPDLTSVRGQS 680
           G  QSG  K +  +  L+  +LE A       + +               PDL  +R  S
Sbjct: 835 GANQSGHIKGIGYK--LYTKMLEEAISQESGEIQESFSVDLKLQVSGFLSPDL--IRSDS 890

Query: 681 IRILLY 686
           +R+ LY
Sbjct: 891 LRLELY 896


>gi|226320379|ref|ZP_03795948.1| transcription-repair coupling factor [Borrelia burgdorferi 29805]
 gi|226234242|gb|EEH32954.1| transcription-repair coupling factor [Borrelia burgdorferi 29805]
          Length = 1125

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 144/465 (30%), Positives = 234/465 (50%), Gaps = 21/465 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           E +A ++  L  +++  K I  P   + ++        P+  T  Q  
Sbjct: 532 WIKNKANAKKRIEEIADKLIELYSKRESIKGIKYP--EDNELQLLFESEFPYDETPDQIR 589

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIK+I +DM     M R+L GDVG GKT VA+ A   AV    Q ++++P  ILA+QH+ 
Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFN 649

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             KK  +N  I +E+++  +      + L+ +  G+  IIIGTH +         L L+I
Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNAETRILKELKIGKIDIIIGTHKILSKKFTCKNLGLII 709

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGV+++ KL +   +   L ++ATPIPR+L ++ +   DIS +   P  R  I+
Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIE 769

Query: 460 TVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
             +   +   I   IE     LS   + + +   IEE               L  +  + 
Sbjct: 770 AYLESFSELLIKHAIES---ELSRDGQVFLVNHNIEELYYLKG-----LIEKLTPY--AR 819

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           IAIIHG+++  + E++M +F     ++L+ATT+IE GID+ +A+ III NA  FGLAQL+
Sbjct: 820 IAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLY 879

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QL+GRVGRG + +    LY     L++ S  RL  +    +   GF IA +D++ R  G 
Sbjct: 880 QLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGN 939

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVR 677
           +LG +Q G  + +     L  ++L  A +     ++ D +   + 
Sbjct: 940 LLGREQHGEIESIGLDYYL--TMLNKAIEKKMGKISSDEEEVDIE 982


>gi|299470460|emb|CBN78452.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 815

 Score =  306 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 146/496 (29%), Positives = 239/496 (48%), Gaps = 40/496 (8%)

Query: 186 PEWIEKDLLQKKS------------FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
           P+   +++L + S              +   A +    P      +  S  R +L   E 
Sbjct: 18  PDANPEEILLEFSDMNLPIAKDQSYLLTRYRAADAARVPLSVVS-DQNSWLRHKLKVQER 76

Query: 234 LAGQ---IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-S 289
           +  Q   +  L  ++   +    P   +G    +  +     PTK Q   + +I  DM  
Sbjct: 77  VTKQAVNVMDLYAKRARVERD--PCKPDGPEMDEFCKGFDHQPTKDQLRCLTEIENDMIW 134

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349
           +K  M R+L GDVG GKT VAL AM   V    Q  ++AP  ILA QHY  + K      
Sbjct: 135 RKIPMDRLLCGDVGFGKTEVALRAMFRMVRHNKQVALLAPTTILAAQHYRTLLKRM-PAD 193

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + V ++ G      R    E I +    +++GTH+L    +++  L L+++DE+ +FGV 
Sbjct: 194 VNVALLRGGNSMGSRG-IKEAIRNETVRVVVGTHSLLSRKVEFPNLGLLVIDEEQKFGVN 252

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           Q+ KL    T   VL +TATPIPRTL ++  G  D+S I   PA R+ + T I+     D
Sbjct: 253 QKEKLKVLTTGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPANRQNVTTYIMKG--TD 310

Query: 470 EVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
           E+++R     +S G + +++ P+I + +++                 + +A+ H ++ + 
Sbjct: 311 EIVQRALTREMSRGGQVFYVVPRINQIEDAW-------LQISRCVPNARVAVGHSKIKN- 362

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
             E V+  F  G   +L+AT++IE GID+ + + I+++++  FGL+QL+Q+RGRVGR + 
Sbjct: 363 -LEDVVLQFTLGRGDILLATSIIENGIDMPNVNSIVVQDSHMFGLSQLYQMRGRVGRSDV 421

Query: 589 ISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK 643
            +   LLY P   LS  +  RL  ++       GF +A  DL+ R  G I G  QSG   
Sbjct: 422 AAYTYLLYPPGHQLSNEAKRRLKAMRELSHLGSGFELANRDLEIRGAGNIFGTDQSG--D 479

Query: 644 FLIAQPELHDSLLEIA 659
                 EL+ ++LE A
Sbjct: 480 LKDIGYELYMNMLEKA 495


>gi|323359428|ref|YP_004225824.1| transcription-repair coupling factor [Microbacterium testaceum
            StLB037]
 gi|323275799|dbj|BAJ75944.1| transcription-repair coupling factor [Microbacterium testaceum
            StLB037]
          Length = 1195

 Score =  306 bits (784), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 122/415 (29%), Positives = 206/415 (49%), Gaps = 13/415 (3%)

Query: 242  LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
             +        G     +    +++    PF+ T+ Q   I +I  DM +   M R+L GD
Sbjct: 612  KLYSARMASKGYAFGPDTPWQRELEEAFPFAETQDQLQTIDEIKADMEKPIPMDRLLSGD 671

Query: 302  VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            VG GKT VA+ A   A++ G Q  ++ P  +L +QH E   +      + V  ++     
Sbjct: 672  VGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHLETFAERFAGFPVTVRPLSRFQTD 731

Query: 362  AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
               +  L  +  G   ++IGTH +  + + +  L L+I+DE+ RFGV+ + +L +  T  
Sbjct: 732  KEAKATLAGLTDGTVDMVIGTHRILTEKVIFKDLGLMIIDEEQRFGVEHKDQLKKLKTNV 791

Query: 422  HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             +L M+ATPIPRTL +   G  ++S +   P  R PI + + P N   ++   ++  L  
Sbjct: 792  DILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILSYVGPRND-KQIAAAIRRELLR 850

Query: 482  GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
              + +++  ++        + V      L     + I + HG+M +   E V+D F    
Sbjct: 851  EGQVFYVHNRVSSI-----QRVAAHLAELVPE--ARIVVAHGQMGEHALEQVVDDFWERR 903

Query: 542  CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--PP 599
              +L++TT+IE G+D+ +A+ III+ A+ +GL+QLHQLRGRVGRG + +    LY    P
Sbjct: 904  ADVLVSTTIIETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRGRDRAYAYFLYDEMKP 963

Query: 600  LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
            LS+ +  RL  +    D   G  +A +DL+ R  G +LG +Q+G    +     L
Sbjct: 964  LSETAADRLETIAVNNDLGSGMQVALKDLELRGAGNLLGAEQAGHIAGVGFDLYL 1018


>gi|285808213|gb|ADC35747.1| transcription-repair coupling factor [uncultured bacterium 293]
          Length = 1139

 Score =  306 bits (784), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 223/450 (49%), Gaps = 17/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    R        +A ++  L   ++ +   G     +    ++      +  T  Q +
Sbjct: 542 WEKVKRRVKKAMRDMAAELLKLYAERKAR--PGHAFAQDSPWLREFEETFEYEETPDQAA 599

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI D+ +DMS    M R++ GDVG GKT VA+ A   AV  G Q  ++      A QH++
Sbjct: 600 AIADVSRDMSDPAPMDRLICGDVGYGKTEVAMRAAMRAVLDGKQVAVLXXXXXXAFQHWK 659

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +K      + VE+++   P    ++ L     G+  ++IGTH L    + +  L L++
Sbjct: 660 TFRKRFAPFPVRVEMVSRFRPPKEIKQVLAEAGQGKVDVLIGTHRLLSKDVAFADLGLLV 719

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFGVQ + +L         L ++ATPIPRTL +   G  D+S I   P  R  I+
Sbjct: 720 IDEEQRFGVQSKERLKHLRRIVDCLTLSATPIPRTLQMGLSGIRDMSVIETPPKDRLAIQ 779

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T I+  +  D +   ++  L+   + +++  ++E        SV      L     + + 
Sbjct: 780 TSIVKFS-TDTITSAVRQELAREGQVFFVHNRVESIY-----SVAALIQRLVPE--ARVV 831

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG+M + + E  M +F  G   +L+ATT+IE G+D+  A+ +I+  A+ +GLAQL QL
Sbjct: 832 VAHGQMGEGELERNMLAFVEGRGDVLVATTIIENGLDIPRANTLIVNRADRYGLAQLXQL 891

Query: 580 RGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGRVGR +  +   L+  P   LS+ +  RL+ +++  +   GF IA  DL+ R  G +L
Sbjct: 892 RGRVGRSDRRAYAWLMVPPDTVLSEIARKRLAAMRDFSELGAGFRIAALDLELRGAGNLL 951

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +QSG    L    E++  LLE + ++ K
Sbjct: 952 GGEQSGHI--LAVGLEMYVKLLEQSIQELK 979


>gi|258654637|ref|YP_003203793.1| transcription-repair coupling factor [Nakamurella multipartita DSM
            44233]
 gi|258557862|gb|ACV80804.1| transcription-repair coupling factor [Nakamurella multipartita DSM
            44233]
          Length = 1192

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 135/440 (30%), Positives = 223/440 (50%), Gaps = 19/440 (4%)

Query: 219  EWTS-PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
            +W     R R A  ++ A  + +   R       G     +    +++    P++ T  Q
Sbjct: 581  DWAKTKGRARKAVRQIAAKLVQVYAARASA---PGHAFAPDTPWQRELEDAFPYTETHDQ 637

Query: 278  ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             +AI ++  DM +   M R++ GDVG GKT +A+ A   AV+ G Q VI+ P  +LAQQH
Sbjct: 638  LAAIDEVKADMERAVPMDRVISGDVGYGKTEIAVRAAFKAVQDGKQVVILVPTTLLAQQH 697

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
                 +      + V  ++         + ++ +A G   I+IGTH L Q SI+Y  L L
Sbjct: 698  LSTFSERMSAFPVTVRGLSRFTSNEQAAQTVKGLADGSVDIVIGTHRLLQPSIRYKDLGL 757

Query: 398  VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
            V+VDE+ RFGV+ +  +T       +L M+ATPIPRTL ++  G  ++S I   P  R P
Sbjct: 758  VVVDEEQRFGVEHKEHITALRAHVDMLTMSATPIPRTLEMSLAGIREMSTIATPPEERHP 817

Query: 458  IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-S 516
            I T +   +         + +L EG + +++  ++ + +             L E    +
Sbjct: 818  ILTYVGAYDEKLVAAAIRRELLREG-QVFYVHNRVADIES--------VARRLREAVPEA 868

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             IA+ HG+M++   E ++D F      +L+ TT++E G+D+ +A+ +I+++AE  GL+Q+
Sbjct: 869  RIAVAHGQMNEDRLEKIIDGFWAREWDVLLCTTIVETGLDISNANTLIVDHAEVLGLSQM 928

Query: 577  HQLRGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
            HQLRGRVGRG E      LY    PL++ ++ RL+ +    D   G  +A +DL+ R  G
Sbjct: 929  HQLRGRVGRGRERGYAYFLYPGEKPLTETAHDRLATIAQNSDLGAGMAVAMKDLEIRGAG 988

Query: 632  EILGIKQSGMPKFLIAQPEL 651
             ILG +QSG    +     +
Sbjct: 989  SILGAEQSGHIAGVGFDLYV 1008


>gi|34557604|ref|NP_907419.1| transcription-repair coupling factor [Wolinella succinogenes DSM
           1740]
 gi|34483321|emb|CAE10319.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Wolinella succinogenes]
          Length = 994

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 132/428 (30%), Positives = 224/428 (52%), Gaps = 19/428 (4%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           +I  L  +++     G  I  +    +    +  F  T  QE +I++I  D+     M R
Sbjct: 448 EIVALAAKREL--IEGRAIRTDFPEIEIFQHSSGFVYTSDQEKSIREIFSDLEGGKVMDR 505

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L GDVG GKT VA+ A+ A V +G QA ++AP  +LA QH++ +KK  +   I +  + 
Sbjct: 506 LLSGDVGFGKTEVAMNAILATVMSGYQAALVAPTTLLAHQHFQSLKKRFEGRGIKMARLD 565

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
             +    R   L  +  G+  +++GTHA+      + +L L+IVDE+H+FGV+Q+ ++  
Sbjct: 566 RFLSSKERTSLLNALKEGEVDVVVGTHAILSA--VFKRLALIIVDEEHKFGVKQKERIKA 623

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
            A   H+L M+ATPIPRTL +       +S +   P+ + P++T +    +   + E + 
Sbjct: 624 IAQDVHMLSMSATPIPRTLNMALSSIKGMSTLLTPPSEKLPVRTFVKEY-QEALLKEIVH 682

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             +  G + ++I   I   +        +    L  +    IAI+H ++ + + E +M +
Sbjct: 683 REIRRGGQIFYIHNNIATIE-----RRQKELLELMPNL--KIAILHSQIPEKETEEIMLA 735

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G   LL++T++IE GI + +A+ III++++ FG+A LHQLRGRVGRG +   C  L 
Sbjct: 736 FEEGRYHLLLSTSIIESGIHLPNANTIIIDSSDRFGIADLHQLRGRVGRGSKEGFCYFLV 795

Query: 597 HPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
                L+  +  RL  L++      G ++A  DL+ R  G +LG  QSG  K +     L
Sbjct: 796 EEKESLTPEAKKRLLALESNSFLGSGSVLAYHDLEIRGGGNLLGEAQSGHIKGI--GYAL 853

Query: 652 HDSLLEIA 659
           +  +LE A
Sbjct: 854 YLKMLEEA 861


>gi|87241294|gb|ABD33152.1| Helicase, C-terminal; Haem peroxidase, plant/fungal/bacterial
           [Medicago truncatula]
          Length = 494

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 139/429 (32%), Positives = 231/429 (53%), Gaps = 20/429 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +     + +   +  L + +  ++    P++    +  +     P+ PT  Q+ 
Sbjct: 53  WEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPMSP---VVAEFAAKFPYEPTPDQKQ 109

Query: 280 AIKDILQDM-SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           A  D+ +D+  ++  M R++ GDVG GKT VA+ A+   V A  QA+++AP  +LA+QH+
Sbjct: 110 AFIDVEKDLTERETPMDRLICGDVGFGKTEVAMRAIHCVVAAKKQAMVLAPTIVLAKQHF 169

Query: 339 EFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           + I +       I V +++    ++ +   LE I +G   II+GTH+L  + + Y  L L
Sbjct: 170 DVISERFSVYPDIKVGLLSRFQTRSEKEAYLEMIKNGDLDIIVGTHSLLGNRVVYNNLGL 229

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           ++VDE+ RFGV+Q+ ++    T+  VL ++ATPIPRTL L   G  D S I+  P  R P
Sbjct: 230 LVVDEEQRFGVKQKERIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVP 289

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           IKT +   ++ D+VI  +K  L    + +++ P+I        + + E    L E F   
Sbjct: 290 IKTQLSSFSK-DKVISAIKYELDRSGQVFYVLPRI--------KGLEEAMEFLEEAFPDV 340

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            IA+ HG+      E  M+ F  G  K+LI+T ++E G+D+ +A+ III++ + FGLAQL
Sbjct: 341 EIAVAHGKQFSKQLEDTMEKFTLGEIKILISTNIVESGLDIQNANTIIIQDVQQFGLAQL 400

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEG 631
           +QLRGRVGR ++ +   L Y     L+  +  RL+ L+   +   GF +AE D+  R  G
Sbjct: 401 YQLRGRVGRADKEAYAYLFYPDKSLLTDQALERLAALEECRELGQGFQLAERDMGIRGFG 460

Query: 632 EILGIKQSG 640
            I G +Q+G
Sbjct: 461 TIFGEQQTG 469


>gi|125534627|gb|EAY81175.1| hypothetical protein OsI_36354 [Oryza sativa Indica Group]
          Length = 640

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 140/473 (29%), Positives = 242/473 (51%), Gaps = 32/473 (6%)

Query: 196 KKSFPSIAEAFNIIHNPRKAKDF-EWTSPARERLA---YDELLAGQIALLLMRKQFKKEI 251
           + + P      +    PR      + ++  + RL      + +   +  L +++  +K  
Sbjct: 15  RYNLP------HEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKRP 68

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKTLVA 310
             P  V      +     P+ PT  Q  A  D+ +D+  ++  M R++ GDVG GKT VA
Sbjct: 69  PYPKPV---GMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVA 125

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALE 369
           + A+   + AG QA+++AP  ILA+QHY+ + +   N   I V + +G   +  + + + 
Sbjct: 126 MRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELIT 185

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           +I +G  HII+GTHA+  + + Y  L L++VDE+ +FGVQQ+ K+     +  VL ++AT
Sbjct: 186 KIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSAT 245

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L   G  D S ++  P  R  ++T +   ++ +  +  +K  L+ G + +++ 
Sbjct: 246 PIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSK-ERALSAIKFELARGGQVFYVV 304

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P+I        +++ +    L +      +A+ HG+    + +  M+ F  G  K+L+ T
Sbjct: 305 PRI--------KAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCT 356

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYT 606
            +IE GID+ +A+ ++++ AE FGLAQL+QLRGRVGR        L Y     LSK +  
Sbjct: 357 HIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATD 416

Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           RL  ++   D   GF +AE+D+  R  G + G +QSG         +L   +L
Sbjct: 417 RLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSG--DVANVGIDLFFDML 467


>gi|307638232|gb|ADN80682.1| Transcription-repair coupling factor [Helicobacter pylori 908]
          Length = 906

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 138/412 (33%), Positives = 217/412 (52%), Gaps = 19/412 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++V     +    +  F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A
Sbjct: 466 KMDVHLAELEVFKSHAGFEYTSDQEKAIAEISRDLSSHRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A   G Q+ ++ P  +LA QH+E ++   +N  + V  +   +  + + K L+ +  
Sbjct: 526 IFCAFLNGFQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRYIKTSEKNKLLKAVEL 585

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           GQ   +IGTHA+     ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 586 GQVDALIGTHAIL--GAKFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 643

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 644 TLNMALSQIKGISSLKTPPTDRKPSRTFLKEKN--DELLKEIIHRELRRNGQIFYIHNHI 701

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +        L       IAI+H +++  + E +M  F  G  ++L+ T+++E
Sbjct: 702 ASISKVKTK-----LEELIPKL--KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVE 754

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ III+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 755 SGIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKNLNEQALKRLLA 814

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  IA  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 815 LEKNSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 864


>gi|317506800|ref|ZP_07964575.1| transcription-repair coupling factor [Segniliparus rugosus ATCC
            BAA-974]
 gi|316254911|gb|EFV14206.1| transcription-repair coupling factor [Segniliparus rugosus ATCC
            BAA-974]
          Length = 1155

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 132/455 (29%), Positives = 230/455 (50%), Gaps = 17/455 (3%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            +W++  R+       +AGQ+  L   +Q     G     +     ++      +PT  Q 
Sbjct: 604  DWSNTKRQARKAVREIAGQLVQLYAARQTA--KGHAFGPDSPWQAELEGAFAHAPTPDQL 661

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            + I ++  DM ++  M R++ GDVG GKT +A+ A   AV+ G Q V+++P  +L+ QH 
Sbjct: 662  TTIAEVKADMEREVPMDRVVCGDVGFGKTEIAVRAAFKAVQDGKQVVVLSPTTLLSDQHL 721

Query: 339  EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
                +      + V+ ++     A  ++ L  +A G+  +++GTH + Q  +++  L LV
Sbjct: 722  RTFSERMAPFPVKVKGLSRFTDPAEAKETLAGVAEGEVDVLVGTHRVLQSKVRFKDLGLV 781

Query: 399  IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
            IVDE+ RFGV+ +  +        VL ++ATPIPRTL ++  G  D+S I   P  R P+
Sbjct: 782  IVDEEQRFGVEHKEHIKALRVNVDVLTLSATPIPRTLEMSLTGIRDMSTILTPPEERFPV 841

Query: 459  KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             T +   +   +V   L+  L    + ++I  ++   +         R   L     + +
Sbjct: 842  LTYVGAHDE-KQVAAALRRELVRDGQVFYIHNRVSSIE-----KTAARLKELVPE--ARV 893

Query: 519  AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
            A+ HG+M +   E+  ++F  G   +L+ TT++E G+D+ +A+ +I+E A+  GL+QLHQ
Sbjct: 894  AVAHGQMGEEALEATAEAFWRGEHDILVCTTIVESGLDIANANTLIVERADTLGLSQLHQ 953

Query: 579  LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
            LRGRVGRG E +    LY P   LS+ ++ RL+ +        G  +A  DL+ R  G +
Sbjct: 954  LRGRVGRGGERAFAYFLYDPERSLSETAHERLATIAQHSSLGSGMAVAMRDLEIRGAGNV 1013

Query: 634  LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            LG++QSG         +L+  L+  A    + +L 
Sbjct: 1014 LGLEQSGHI--AGVGFDLYVRLVGEAVTAYRAVLD 1046


>gi|171741407|ref|ZP_02917214.1| hypothetical protein BIFDEN_00490 [Bifidobacterium dentium ATCC
           27678]
 gi|283455245|ref|YP_003359809.1| RecG-like helicase [Bifidobacterium dentium Bd1]
 gi|171277021|gb|EDT44682.1| hypothetical protein BIFDEN_00490 [Bifidobacterium dentium ATCC
           27678]
 gi|283101879|gb|ADB08985.1| RecG-like helicase [Bifidobacterium dentium Bd1]
          Length = 881

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 189/608 (31%), Positives = 268/608 (44%), Gaps = 103/608 (16%)

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           +P+ + + L   +     AEAF  IH+P   KD +        L Y+E L  Q AL+  R
Sbjct: 275 VPDIVPEHLRAAEGLMHRAEAFMAIHDPTNTKDCDAALHT---LRYEEALICQTALVKSR 331

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV-- 302
              +K      + E  +    + ++PF  T  Q   I DI  DM+    M R+LQG+V  
Sbjct: 332 DASRKAAASACS-ETALLDDFIASLPFDLTAGQRQVIADISADMACDYPMQRLLQGEVGS 390

Query: 303 --------------GSGKTLVALIAMAAAVEAGGQ-----------AVIMAPIGIL---- 333
                         GSG   V +       E   +           AV  A  G      
Sbjct: 391 GKTVVAVAAMMQAVGSGLQAVLVAPTQVLAEQHYESISKMVQRMGGAVRTAEYGESHEQS 450

Query: 334 ---------AQQHYEFIKKYTQNTQ--------------------IIVEIITGNMPQAHR 364
                    AQ            T                     I V ++TG M  + R
Sbjct: 451 THNQGVDGGAQVGGRSAGGELAGTGPTGGGLAAGESGIGNLPGGDIPVLLLTGGMKLSAR 510

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHV 423
           R+ L   A G   I++ THA F  + Q   L L ++DEQHRFGV+QR  L  KA   PH+
Sbjct: 511 RRVLAVAASGTPCIVVATHAAFSKTFQAPNLALAVIDEQHRFGVEQRESLNAKADKAPHL 570

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV---LS 480
           L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T ++P      +     ++   L 
Sbjct: 571 LVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTFVVPEADAHTMASMFALIRSRLD 630

Query: 481 EGKKAYWICPQI--------------------------EEKKESNFR-------SVVERF 507
            G++AY +CP+I                          E+ ++   R        + ER 
Sbjct: 631 AGERAYVVCPRIDADSTEVDTSPDEDPGRSFDELYELGEDDEQRAQRPPLHSVAEIKERL 690

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
             L +      A + GR  D  K  VM  F  GT  +L+ATTVIEVG+DV  AS ++I +
Sbjct: 691 AGLPQFAGIRFATLTGRDDDETKMRVMADFAAGTTPILVATTVIEVGVDVAQASCMVIFD 750

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           A+ +GL+QLHQLRGRVGRG   S   L+       ++  RL V++ + DG  IA+ DL+ 
Sbjct: 751 ADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEAGSDAAQRLEVIRGSLDGAEIAQADLEF 810

Query: 628 RKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
           R  G++LG  QSG      + +      ++E AR  A+ ++  DPDL     Q    +L 
Sbjct: 811 RGAGDVLGDAQSGGRSSLKLLRVVKDVKIIEHARTAAEELVAADPDLLG-EVQLAGAVLD 869

Query: 687 LYQYNEAF 694
             + NE F
Sbjct: 870 FTRGNETF 877



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 53/157 (33%), Gaps = 20/157 (12%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+++             ++    +       D L Y+P    +      + E     
Sbjct: 5   LETPITSI-------ETNRRRVGALKSLGVVSIGDALTYYPFRVTEPVPLRALREAKIGE 57

Query: 69  IVTITGYISQHSSFQLQKRR-PYKILLNDG--------TGEI-TLLFFYRKT---EMLKN 115
            +    ++ +   F + +R       ++D          G + +L+FF  +    + ++ 
Sbjct: 58  KMAFAAHVREVRVFPMARRGFRLIATVDDARFAQSRRVAGSLASLVFFSYRKSYVDWVQR 117

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVN 152
              +G  + + G+     +R+   HP  +  N  D+ 
Sbjct: 118 RLHDGALLVIAGEPSVYNDRLQFTHPDMLTVNPTDMQ 154


>gi|242068687|ref|XP_002449620.1| hypothetical protein SORBIDRAFT_05g020300 [Sorghum bicolor]
 gi|241935463|gb|EES08608.1| hypothetical protein SORBIDRAFT_05g020300 [Sorghum bicolor]
          Length = 834

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 141/470 (30%), Positives = 239/470 (50%), Gaps = 26/470 (5%)

Query: 196 KKSFPSIAEAFNIIHNPRKAKDF-EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
           + + P      +    PR      + ++  + RL     +   +  L+     +  +G P
Sbjct: 209 RYNLP------HEKTRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRLGRP 262

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKTLVALIA 313
              +           P+ PT  Q  A  D+ +D+  ++  M R++ GDVG GKT VA+ A
Sbjct: 263 PYPKPASMDDFAAEFPYEPTPDQCQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAMRA 322

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIA 372
           +   V AG QA+++AP  ILA+QHY+ + +   N   I + I +G   +  + + + +I 
Sbjct: 323 IFIVVSAGFQAMVLAPTIILAKQHYDVMTERFANYPEIKIAIFSGAQSKEEKDELITKIK 382

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +G  HII+GTHAL  + + Y  L L++VDE+ +FGVQQ+ K+    ++  VL ++ATPIP
Sbjct: 383 NGDLHIIVGTHALLTERMVYSNLGLLVVDEEQKFGVQQKEKIASYKSSIDVLTLSATPIP 442

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL L   G  D S ++  P  R  +KT +   ++ +  +  +K  L  G + +++ P+I
Sbjct: 443 RTLYLALTGFRDASLMSTPPPERVAVKTYVSAFSK-ERALSAIKFELQRGGQVFYVVPRI 501

Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                   +++ +    L +      IA+ HG+      +  M+ F +G  K+L+ T +I
Sbjct: 502 --------KAIDDVLQFLKDSLPDVPIAVAHGKKMSKSIQLAMEDFASGEVKILVCTHII 553

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLS 609
           E GID+ +A+ +I++ AE +GLAQL+QLRGRVGR        L Y     LS+ +  RL 
Sbjct: 554 ESGIDIANANTMIVQFAELYGLAQLYQLRGRVGRSGREGFAYLFYTDKSLLSRVATDRLG 613

Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            ++   +   GF +AE+D+  R  G + G +QSG         +L   +L
Sbjct: 614 AIEEHSELGQGFHVAEKDMGIRGFGSLFGDQQSG--DVANVGIDLFFDML 661


>gi|3914631|sp|O50224|RECG_THIFE RecName: Full=ATP-dependent DNA helicase recG
 gi|2653995|gb|AAC21662.1| RecG [Acidithiobacillus ferrooxidans]
          Length = 652

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 135/425 (31%), Positives = 229/425 (53%), Gaps = 14/425 (3%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L + +S  RGVG      L  +      +  R  D+LF+ PS + DR +   ++ +   +
Sbjct: 32  LQSSVSALRGVGPALVPRLQHM------DLWRVQDVLFHLPSRYQDRRHIASMATLQAGQ 85

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              I G I +    Q   R  + + ++DG+G + +  F+     L+  +  GR++   G+
Sbjct: 86  ECAILGEIVRV-DHQRGGREQWLVTVSDGSGRLQIRLFHMTVA-LRAQWQVGRRLWCFGE 143

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPL-IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPE 187
           ++   + + M+HP +   +      P  +   Y    G++   +++ + +AL+ L  LP+
Sbjct: 144 LRGGFHGLEMIHPEWQMADVPQFQAPRHLTPFYPSSEGITQAQWRRWMAQALTLLDQLPD 203

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF-EWTSPARERLAYDELLAGQIALLLMRKQ 246
           ++E  L  +  +P + E   ++H    A +      PA +RLA +ELLA  +A+  MR+ 
Sbjct: 204 YLENRLPPQ--WPGLREGLRLLH--ESADEIPSPQHPAWQRLALEELLANHLAVRRMRQS 259

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
              +    +  +G++  + L ++PFSPT +QE  I +I  D+ +   M R+LQGDVGSGK
Sbjct: 260 GMMQNAPCLRSKGQLWHRFLAHLPFSPTMAQERVIAEINADLVRHRPMRRLLQGDVGSGK 319

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           TLVA  A   A+EAG Q  +MAP  ILA+Q +   +++ +   + V  + G+     RR+
Sbjct: 320 TLVAAAATLTALEAGYQVAMMAPTEILAEQLHARFQQWLEPLGLEVGYLVGSRSPRARRE 379

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             E +A G   ++IGT +LFQ+ + +  L LVI+DEQHRFGV+QR +L +K   PH+L+M
Sbjct: 380 TAETLAGGSLRLVIGTQSLFQEGVVFACLGLVIIDEQHRFGVEQRRQLLEKGAMPHLLVM 439

Query: 427 TATPI 431
           TATPI
Sbjct: 440 TATPI 444


>gi|168021077|ref|XP_001763068.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685551|gb|EDQ71945.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 792

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 144/441 (32%), Positives = 230/441 (52%), Gaps = 20/441 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W     +     + L   +  L + +  +     P N   K+        P+  T  Q  
Sbjct: 188 WEKRVSKGKLAIQKLVVNMMELYIHRLKQTRPVYPKN--SKLMDSFAAKFPYKETSDQVQ 245

Query: 280 AIKDILQDM-SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           AI D+ +DM  ++  M R++ GDVG GKT VAL A+  A  AG QA+++AP  +LA+QHY
Sbjct: 246 AIADVERDMTERETPMDRLICGDVGFGKTEVALRALFLAASAGRQAMLLAPTTVLAKQHY 305

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           + I++      + V +++       +++ +  I+ G   I++GTH+L  + ++Y+ L L+
Sbjct: 306 DVIRQRFAGYDMKVALLSRFQKDGEKKEVIAGISDGSLSIVVGTHSLLGNQVRYHNLGLL 365

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ RFGV+Q+ ++T   T+  VL ++ATPIPRTL L   G  D S IT  PA R+PI
Sbjct: 366 VVDEEQRFGVRQKERITSMKTSVDVLTLSATPIPRTLYLALSGFRDASLITTPPAERRPI 425

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-S 517
            T ++  N  + V + +   L  G + +++ P+++  +ES           L  +F    
Sbjct: 426 TTHLMEFN-PEAVKKAIDFELKRGGQVFYVVPRVKGMEESK--------AILESYFPDVG 476

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I + HG+ S    E  M+ F  GT  +L+ T+++E G+D+   + IIIE+ + FGLAQL+
Sbjct: 477 IGVAHGQQSATVLEESMEQFSEGTYLILLCTSIVESGLDIRRVNTIIIEDVQLFGLAQLY 536

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED------GFLIAEEDLKQRKEG 631
           QLRGRVGR +   +   ++HP     S   L  L   ED      GF +AE D+  R  G
Sbjct: 537 QLRGRVGRSDRE-AHAYMFHPSKENLSDDALERLVALEDCCGLGQGFQLAERDMAIRGIG 595

Query: 632 EILGIKQSGMPKFLIAQPELH 652
            + G KQSG    +     L 
Sbjct: 596 SVFGEKQSGDVAKIGVDLYLE 616


>gi|108864446|gb|ABA94062.2| CarD-like transcriptional regulator family protein, expressed
           [Oryza sativa Japonica Group]
          Length = 832

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 140/473 (29%), Positives = 242/473 (51%), Gaps = 32/473 (6%)

Query: 196 KKSFPSIAEAFNIIHNPRKAKDF-EWTSPARERLA---YDELLAGQIALLLMRKQFKKEI 251
           + + P      +    PR      + ++  + RL      + +   +  L +++  +K  
Sbjct: 207 RYNLP------HEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKRP 260

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKTLVA 310
             P  V      +     P+ PT  Q  A  D+ +D+  ++  M R++ GDVG GKT VA
Sbjct: 261 PYPKPV---GMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVA 317

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALE 369
           + A+   + AG QA+++AP  ILA+QHY+ + +   N   I V + +G   +  + + + 
Sbjct: 318 MRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELIT 377

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           +I +G  HII+GTHA+  + + Y  L L++VDE+ +FGVQQ+ K+     +  VL ++AT
Sbjct: 378 KIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSAT 437

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L   G  D S ++  P  R  ++T +   ++ +  +  +K  L+ G + +++ 
Sbjct: 438 PIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSK-ERALSAIKFELARGGQVFYVV 496

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P+I        +++ +    L +      +A+ HG+    + +  M+ F  G  K+L+ T
Sbjct: 497 PRI--------KAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCT 548

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYT 606
            +IE GID+ +A+ ++++ AE FGLAQL+QLRGRVGR        L Y     LSK +  
Sbjct: 549 HIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATD 608

Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           RL  ++   D   GF +AE+D+  R  G + G +QSG         +L   +L
Sbjct: 609 RLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSG--DVANVGIDLFFDML 659


>gi|308183706|ref|YP_003927833.1| transcription-repair coupling factor [Helicobacter pylori PeCan4]
 gi|308065891|gb|ADO07783.1| transcription-repair coupling factor [Helicobacter pylori PeCan4]
          Length = 1001

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 136/412 (33%), Positives = 217/412 (52%), Gaps = 19/412 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++V     +    +  F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A
Sbjct: 466 KMDVHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A   G Q+ ++ P  +LA QH+E ++   +N  + V  +   +  + + K L+ +  
Sbjct: 526 IFCAFLNGFQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRYIKTSEKNKLLKAVEL 585

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G    +IGTHA+     ++  L L++VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 586 GLVDALIGTHAIL--GTKFKNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 643

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 644 TLNMALSQIKGISSLKTPPTDRKPSRTFLKEKN--DELLKEIIYRELRRNGQIFYIHNHI 701

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +       +L       IAI+H +++  + E +M  F  G  ++L+ T+++E
Sbjct: 702 ASISKVKTK-----LENLIPKL--KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVE 754

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ III+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 755 SGIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLA 814

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  IA  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 815 LEKNSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 864


>gi|317014985|gb|ADU82421.1| transcription-repair coupling factor [Helicobacter pylori
           Gambia94/24]
          Length = 1001

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 137/412 (33%), Positives = 216/412 (52%), Gaps = 19/412 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++      +    +  F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A
Sbjct: 466 KMDTHLAELEVFKSHAGFEYTSDQEKAIAEISRDLSSHRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A   G Q+ ++ P  +LA QH+E +K   +N  + V  +   +  + + K L+ +  
Sbjct: 526 IFCAFLNGFQSALVVPTTLLAHQHFETLKARFENFGVKVARLDRYIKTSEKSKLLKAVGL 585

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           GQ   +IGTHA+     ++  L L++VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 586 GQVDALIGTHAIL--GAKFKNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 643

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 644 TLNMALSQIKGISSLKTPPTDRKPSRTFLKEKN--DELLKEIIYRELRRNGQIFYIHNHI 701

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +        L       IAI+H +++  + E +M  F  G  ++L+ T+++E
Sbjct: 702 ASISKVKTK-----LEELIPKL--KIAILHSQINAHESEEIMLEFAKGNYQVLLCTSIVE 754

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ III+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 755 SGIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKNLNEQALKRLLA 814

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  IA  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 815 LEKNSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 864


>gi|325996826|gb|ADZ52231.1| Transcription-repair coupling factor [Helicobacter pylori 2018]
 gi|325998418|gb|ADZ50626.1| Transcription-repair coupling factor [Helicobacter pylori 2017]
          Length = 1001

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 138/412 (33%), Positives = 217/412 (52%), Gaps = 19/412 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++V     +    +  F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A
Sbjct: 466 KMDVHLAELEVFKSHAGFEYTSDQEKAIAEISRDLSSHRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A   G Q+ ++ P  +LA QH+E ++   +N  + V  +   +  + + K L+ +  
Sbjct: 526 IFCAFLNGFQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRYIKTSEKNKLLKAVEL 585

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           GQ   +IGTHA+     ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 586 GQVDALIGTHAIL--GAKFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 643

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 644 TLNMALSQIKGISSLKTPPTDRKPSRTFLKEKN--DELLKEIIHRELRRNGQIFYIHNHI 701

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +        L       IAI+H +++  + E +M  F  G  ++L+ T+++E
Sbjct: 702 ASISKVKTK-----LEELIPKL--KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVE 754

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ III+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 755 SGIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKNLNEQALKRLLA 814

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  IA  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 815 LEKNSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 864


>gi|257470409|ref|ZP_05634500.1| transcription-repair coupling factor [Fusobacterium ulcerans ATCC
           49185]
 gi|317064617|ref|ZP_07929102.1| transcription-repair coupling factor [Fusobacterium ulcerans ATCC
           49185]
 gi|313690293|gb|EFS27128.1| transcription-repair coupling factor [Fusobacterium ulcerans ATCC
           49185]
          Length = 983

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 137/432 (31%), Positives = 236/432 (54%), Gaps = 10/432 (2%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             + +   +E++A    ++ ++ +   E G   + +    ++   + P+  T SQ  AI+
Sbjct: 407 KRKRQKLEEEMVAFAKEIIEIQAKRAFEKGYAFSHDTVWQEEFEESFPYKETASQLKAIE 466

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           D+ +DM     M R++ GDVG GKT +AL A   A   G Q V+M P  +LAQQHYE   
Sbjct: 467 DVKRDMESDRIMDRVVCGDVGYGKTEIALRAAFKASIDGKQVVVMVPTTVLAQQHYERFT 526

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +  +N  + +EI++    +  +++ L++I+ G   I+IGTH +    +++  L LV++DE
Sbjct: 527 ERFKNYPVSIEILSRLKSEKEQKEVLKKISAGTIDIVIGTHRILSSDVKFKDLGLVVIDE 586

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + +FGV+ + +L +      ++ +TATPIPRTL L+ LG  D+S I   P GRKPI+T+ 
Sbjct: 587 EQKFGVKAKEQLKKLKNKIDMITLTATPIPRTLNLSLLGIRDLSVIDTPPEGRKPIETMF 646

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
           I  +   ++ E +   ++   + ++I   ++  +    +   E    L  +    +  IH
Sbjct: 647 IDKDD-KKLKEIIMSEIAREGQVFYIFNSVKNIE----KKTHELRKLLPNYL--KLDYIH 699

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M   + ++ +  F+NG   +LI+TT+IE GID+ +A+ +II+  E  GL+Q++QLRGR
Sbjct: 700 GQMLPKEIKNKIKDFENGDIDMLISTTIIENGIDIENANTMIIDGVEKLGLSQIYQLRGR 759

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQS 639
           +GRG     C LL     +K +  R   +KN  D   GF ++ ED++ R  GEILG KQ 
Sbjct: 760 IGRGRRKGYCYLLTKEHQTKKAKEREESIKNLGDSGGGFQLSLEDMRIRGAGEILGDKQH 819

Query: 640 GMPKFLIAQPEL 651
           G  +       +
Sbjct: 820 GALETFGYNLYI 831


>gi|125577373|gb|EAZ18595.1| hypothetical protein OsJ_34121 [Oryza sativa Japonica Group]
          Length = 832

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 140/473 (29%), Positives = 242/473 (51%), Gaps = 32/473 (6%)

Query: 196 KKSFPSIAEAFNIIHNPRKAKDF-EWTSPARERLA---YDELLAGQIALLLMRKQFKKEI 251
           + + P      +    PR      + ++  + RL      + +   +  L +++  +K  
Sbjct: 207 RYNLP------HEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKRP 260

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKTLVA 310
             P  V      +     P+ PT  Q  A  D+ +D+  ++  M R++ GDVG GKT VA
Sbjct: 261 PYPKPV---GMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVA 317

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALE 369
           + A+   + AG QA+++AP  ILA+QHY+ + +   N   I V + +G   +  + + + 
Sbjct: 318 MRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELIT 377

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           +I +G  HII+GTHA+  + + Y  L L++VDE+ +FGVQQ+ K+     +  VL ++AT
Sbjct: 378 KIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSAT 437

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L   G  D S ++  P  R  ++T +   ++ +  +  +K  L+ G + +++ 
Sbjct: 438 PIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSK-ERALSAIKFELARGGQVFYVV 496

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P+I        +++ +    L +      +A+ HG+    + +  M+ F  G  K+L+ T
Sbjct: 497 PRI--------KAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCT 548

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYT 606
            +IE GID+ +A+ ++++ AE FGLAQL+QLRGRVGR        L Y     LSK +  
Sbjct: 549 HIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATD 608

Query: 607 RLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           RL  ++   D   GF +AE+D+  R  G + G +QSG         +L   +L
Sbjct: 609 RLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSG--DVANVGIDLFFDML 659


>gi|15612523|ref|NP_224176.1| transcription-repair coupling factor [Helicobacter pylori J99]
 gi|7531157|sp|Q9ZJ57|MFD_HELPJ RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|4156075|gb|AAD07030.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
          Length = 1001

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 136/412 (33%), Positives = 216/412 (52%), Gaps = 19/412 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++      +    +  F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A
Sbjct: 466 KMDTHLAELEIFKSHAGFEYTSDQEKAIAEISRDLSSHRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A   G Q+ ++ P  +LA QH+E +K   +N  + V  +   +  + + K L+ +  
Sbjct: 526 IFCAFLNGFQSALVVPTTLLAHQHFETLKARFENFGVKVARLDRYIKTSEKSKLLKAVEL 585

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G   ++IGTHA+     ++  L L++VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 586 GLVDVLIGTHAIL--GTKFKNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 643

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 644 TLNMALSQIKGISSLKTPPTDRKPSRTFLKEKN--DELLKEIIYRELRRNGQIFYIHNHI 701

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +        L       IAI+H +++  + E +M  F  G  ++L+ T+++E
Sbjct: 702 ASISKVKTK-----LEDLIPKL--KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVE 754

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ III+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 755 SGIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLA 814

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  IA  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 815 LEKNSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 864


>gi|302757661|ref|XP_002962254.1| hypothetical protein SELMODRAFT_77276 [Selaginella moellendorffii]
 gi|300170913|gb|EFJ37514.1| hypothetical protein SELMODRAFT_77276 [Selaginella moellendorffii]
          Length = 704

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 148/458 (32%), Positives = 242/458 (52%), Gaps = 17/458 (3%)

Query: 210 HNPRKAKDFEWTSPARERLA-YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
             P  +K  + +   + R     +     + ++ +  +  K+     + +     K    
Sbjct: 87  RYPALSKLNDRSQWEKRRTEGSLDAQRRVVKMIDVYIRRLKQKRPVYSKDVPAMSKFAGK 146

Query: 269 IPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            P++PT  Q  A  D+ +D+   +  M R++ GDVG GKT VA+ A+  AV A  Q +++
Sbjct: 147 FPYTPTPDQIKAFLDVERDLTDAETPMDRLICGDVGFGKTEVAMRAIFYAVSAKKQVMVL 206

Query: 328 APIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           AP  +LA+QH+E IK+   N   I V +++       RR  +  I  G  +I +GTH+L 
Sbjct: 207 APTTVLAKQHHESIKERFANFPDIKVALLSRFQNNVDRRAVIAGINDGVVNIAVGTHSLL 266

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            ++IQY K+ L++VDE+ RFGV Q+ K++   T   +L ++ATPIPRTL +   G  D S
Sbjct: 267 GNNIQYEKVGLLVVDEEQRFGVAQKEKISTLKTTVDILTLSATPIPRTLHMALSGFRDAS 326

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            +T  P  R+PIKT +   ++ D V + +K  L    + +++ P+I+     N  S  ++
Sbjct: 327 LMTTPPPERRPIKTHVCVYSQ-DMVKDAIKAELDRQGQVFYVVPRIQ----GNMESTEKK 381

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              L      SIA  HG+    + E+ M  F      +L+ T +IE G+D+   + II+E
Sbjct: 382 LKLLVPGVQVSIA--HGKKCATELEATMTKFTEKGTSILLCTNIIESGLDIPTVNTIIVE 439

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN---TEDGFLIA 621
           N + FGLAQ++QLRGRVGR ++++   +L+ P   LS ++  RLS L++      GF +A
Sbjct: 440 NVQMFGLAQIYQLRGRVGRADKVAHAYMLHPPKDFLSSDALERLSALEDCCALGQGFQLA 499

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           E D+  R  G I G KQSG  +F     +L+  +L  A
Sbjct: 500 ERDMAIRGIGSIFGEKQSG--EFSKVGVDLYAEMLFEA 535


>gi|213389870|gb|ACJ45997.1| putative ATP-dependent DNA helicase [Palm lethal yellowing
           phytoplasma]
          Length = 623

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 178/646 (27%), Positives = 300/646 (46%), Gaps = 40/646 (6%)

Query: 27  LSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF---Q 83
           L+K       N     +L+   P  + +      I+++  +  V + G I     F   +
Sbjct: 7   LNK--KLIQNNIHNIKELILTKPKKYKNF-ILNDINKVFHKEEVNLLGKIINQPIFLKNK 63

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            +K+   KI +      + +L F        N    G  I + GK    +N    V   +
Sbjct: 64  SEKKNYLKISILVNKKIVKILIFN---SFFFNFLKLGTNIFIKGKYYLYEN---CVIASF 117

Query: 144 IFHNSQDVNFPLIEAVYSLPT---GLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200
           +  N+   N   I+ +Y L         +  KKI     S   ++ E +  + L+K +  
Sbjct: 118 VSLNTNIANQ--IQPIYKLKKIPDKKISNFLKKIFH---SPRLIIKENLNNNFLKKYNLI 172

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260
           S  +AF  +H P+  +          R  ++E L      +  +     +I +  N + K
Sbjct: 173 SRKKAFENLHIPQNKQSLNQALI---RFKFEEALKINKKWMEEKHHLISKIPLIFNNKEK 229

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
              KI++ I F  TK+Q+  I DI  D  +++   R++QGDVGSGKT+++ I+  A +  
Sbjct: 230 FINKIIKKITFELTKNQKEIIDDIFDDFQKQHYTQRLIQGDVGSGKTIISFISAIAVIAK 289

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             Q V+MAP  IL++QHY   K +    +I    ++      + +K  + I      II 
Sbjct: 290 KKQVVMMAPTEILSKQHYSNFKNFF--PEIKSFCLSSKT--KNLKKIKQEIQKNSIQIIF 345

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GTH     ++    L L+I+DE H+FG + + K+T K     +L +TATPIP+TL    L
Sbjct: 346 GTH--ILSNLDIPNLGLIIIDETHKFGTEIKKKITAKNIPSDILYLTATPIPKTLASIYL 403

Query: 441 GDIDISKITEKP-AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           G +  S + EKP   +  I T  I  N   E+I  L     + ++ Y + P I++ K+  
Sbjct: 404 GFLSTSLLIEKPNIKQSKIITQKIDFN---EIINILNKNQYKKEQTYIVVPAIKDSKKIY 460

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
               +  F  L  +   ++  +HG+    ++E +M +F N    +LIAT++IEVGID+ +
Sbjct: 461 NIEKITSF--LENNKIKNLYSLHGKKKFEEQEKIMYNFTNNNKGILIATSIIEVGIDIEN 518

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + III  AE+FGL+QLHQLRGR+GR  + + C ++     S+    R  + +   +GF 
Sbjct: 519 VTTIIILGAEYFGLSQLHQLRGRIGRNNKENYCFIV-----SEKDNERFKIFQKENNGFK 573

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           ++E DLK R  G  L  +QSG  K+          ++   +KD + 
Sbjct: 574 LSEFDLKIRGPGSFLRKEQSGFLKYHFLNILYDYKIILQVKKDLEK 619


>gi|116515116|ref|YP_802745.1| hypothetical protein BCc_180 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256970|gb|ABJ90652.1| transcription-repair coupling factor [Buchnera aphidicola str. Cc
           (Cinara cedri)]
          Length = 683

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 135/458 (29%), Positives = 230/458 (50%), Gaps = 18/458 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W    ++        A ++    ++       G          +       +  T  Q++
Sbjct: 84  WLETCKKVKKKIYDAAVELID--IKAHRYCRKGFSFKKNILKYKNFCNKCLYHITLDQKN 141

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           +IK+I+QDM +   M R+L GDVG GKT +A+ A   A++   Q  I+ P  +LAQQHY 
Sbjct: 142 SIKEIIQDMKKSVPMDRLLCGDVGFGKTEIAMRATFIALDNKKQVAILVPTTLLAQQHYN 201

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K      +  + + +        +   ++I +G+ +I+IGTH +    + +  L L+I
Sbjct: 202 TFKNRFSEYKYKINVYSRFTSSKKEKIIKKKIKNGKINILIGTHKILSKYLIWKNLGLLI 261

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV  + K+ +      +L +TATPIPRTL ++ LG  D+S I+  P  R  IK
Sbjct: 262 IDEEHRFGVFHKEKIKKLYINIDILTLTATPIPRTLNMSILGIKDLSIISTPPKKRLKIK 321

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T I        + + +   L    + Y++  +++  +E            L+    + I 
Sbjct: 322 TFIKNF-HPKIIRKVILRELKRKGQVYYLFNRVKNIEEKKKYL-------LYLIPEARIE 373

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M+  D   +M  F N    +LI TT+I+  I++ + + +IIENA+ FGL+QLHQL
Sbjct: 374 ISHGKMNSKDLYKIMYDFFNKKFDILICTTIIDTEINISNVNTMIIENADKFGLSQLHQL 433

Query: 580 RGRVGRGEEISSCILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEIL 634
           RGR+GR +  +    L      ++K +  RL+++KN  D   G ++++ DL+ R  GE+L
Sbjct: 434 RGRIGRSKRQAYAFFLIPNLNKINKKAKKRLNIIKNYTDLGSGLILSKHDLEIRGVGELL 493

Query: 635 GIKQSGMPK---FLIAQPELHDSLLEIARKDAKHILTQ 669
           G  QSG  K   F + +  L +S+L+I +K     + +
Sbjct: 494 GTNQSGHIKTIGFKLYKKFLKESILKIKQKKNLQTINE 531


>gi|302763495|ref|XP_002965169.1| hypothetical protein SELMODRAFT_83786 [Selaginella moellendorffii]
 gi|300167402|gb|EFJ34007.1| hypothetical protein SELMODRAFT_83786 [Selaginella moellendorffii]
          Length = 693

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 147/458 (32%), Positives = 241/458 (52%), Gaps = 17/458 (3%)

Query: 210 HNPRKAKDFEWTSPARERLA-YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
             P  +K  + +   + R     +     + ++ +  +  K+     + +     K    
Sbjct: 76  RYPALSKLNDRSQWEKRRTEGSLDAQRRVVKMIDVYIRRLKQKRPVYSKDVPAMSKFAGK 135

Query: 269 IPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            P++PT  Q  A  D+ +D+   +  M R++ GDVG GKT VA+ A+  AV A  Q +++
Sbjct: 136 FPYTPTPDQIKAFLDVERDLTDAETPMDRLICGDVGFGKTEVAMRAIFYAVSAKKQVMVL 195

Query: 328 APIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           AP  +LA+QH+E IK+   N   I V +++       RR  +  I  G  +I +GTH+L 
Sbjct: 196 APTTVLAKQHHESIKERFANFPDIKVALLSRFQNNVDRRAVIAGINDGVVNIAVGTHSLL 255

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            ++IQY  + L++VDE+ RFGV Q+ K++   T   +L ++ATPIPRTL +   G  D S
Sbjct: 256 GNNIQYENVGLLVVDEEQRFGVAQKEKISTLKTTVDILTLSATPIPRTLHMALSGFRDAS 315

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            +T  P  R+PIKT +   ++ D V + +K  L    + +++ P+I+     N  S  ++
Sbjct: 316 LMTTPPPERRPIKTHVCVYSQ-DMVKDAIKAELDRRGQVFYVVPRIQ----GNMESTEKK 370

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
              L      SIA  HG+    + E+ M  F      +L+ T +IE G+D+   + II+E
Sbjct: 371 LKLLVPGVQVSIA--HGKKCATELEATMTKFTEKGTSILLCTNIIESGLDIPTVNTIIVE 428

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKN---TEDGFLIA 621
           N + FGLAQ++QLRGRVGR ++++   +L+ P   LS ++  RLS L++      GF +A
Sbjct: 429 NVQMFGLAQIYQLRGRVGRADKVAHAYMLHPPKDFLSSDALERLSALEDCCALGQGFQLA 488

Query: 622 EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           E D+  R  G I G KQSG  +F     +L+  +L  A
Sbjct: 489 ERDMAIRGIGSIFGEKQSG--EFSKVGVDLYAEMLFEA 524


>gi|295099572|emb|CBK88661.1| RecG-like helicase [Eubacterium cylindroides T2-87]
          Length = 497

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 136/486 (27%), Positives = 232/486 (47%), Gaps = 26/486 (5%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
            +    L K+            DLL  +P  +      P   +      V   G IS   
Sbjct: 10  PRRKQLLEKMS------IFSVEDLLKTYPMRYETIETIPY-KDWQPSMHVCFEGLISSVC 62

Query: 81  SFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
                 + R   K  +     E+ +  F R      N F  G+KI++ G + +  N++++
Sbjct: 63  RVIRLQKNRSMTKFSVISWDEELEITIFNRPWT---NQFTFGKKISLFG-VYQGNNKVVV 118

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
              ++     Q      ++ V+SL  GL  +    ++  AL  +  +   +   L +K  
Sbjct: 119 STYNFKPLKEQVG----LKPVHSLIEGLKQNDMITMVSNALEFVDQMESLVPLRLQEKYR 174

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV- 257
             +  +A   IH P+   +          L Y E L  Q  +   +   K+ +     V 
Sbjct: 175 LLNYPQALRWIHQPKTQNELNQA---VRTLKYQEFLCFQCVMQASQANTKEHVHKQEKVF 231

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +G + Q  ++  P++ T  Q+++I+ +L DM     M R++QGDVG GKT+VA+ A+ A 
Sbjct: 232 DGNMIQTWIQQFPYTLTSDQQTSIEAVLNDMKSSKIMFRLVQGDVGCGKTIVAMTAIYAC 291

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             +  QA  + P  ILA+QHYE ++K      +   +   ++P   +++ L  +++G+  
Sbjct: 292 YLSNHQAAFLVPTEILARQHYENMQK----LGLETCLYVSSLPTKEKQQILTDLSNGKIK 347

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           I++GTHALFQ+ + +  L LV+ DEQ RFGV+QR  L +K  +   L+M+ATPIPRT   
Sbjct: 348 IVVGTHALFQEQVDFKDLGLVVTDEQQRFGVKQRRSLLEKGKSVDFLMMSATPIPRTYAH 407

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKK 496
              GD+DIS I   PAGRKP+ T  IP   +  +++ +   +  E ++ Y +CP IE+ +
Sbjct: 408 FIYGDLDISNIHTMPAGRKPVITKYIPSKSMASILKDILDGIQIEKRQCYVVCPSIEDNE 467

Query: 497 ESNFRS 502
           ++N RS
Sbjct: 468 DTNLRS 473


>gi|327399449|ref|YP_004340318.1| transcription-repair coupling factor [Hippea maritima DSM 10411]
 gi|327182078|gb|AEA34259.1| transcription-repair coupling factor [Hippea maritima DSM 10411]
          Length = 1032

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 143/431 (33%), Positives = 231/431 (53%), Gaps = 15/431 (3%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           ++     ++Q  K    P +++    ++      +  T  Q  AI D+  DMS+   M R
Sbjct: 470 ELVNTYAKRQLVKRK--PYDIDLLEIKEFEAMFEYDETPDQLKAISDVKDDMSKDVPMDR 527

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++ GDV  GKT VA  A+A AV    QAV M P  +LA QH++ +K   ++  + ++++T
Sbjct: 528 LICGDVSFGKTEVAARAIAIAVFNLKQAVFMVPTTVLALQHFKNLKDRFKSFPVEIQLLT 587

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
               ++ R + L+ +  G+  I+I THA++   +++  L LV++DE+HRFGV+ +  L  
Sbjct: 588 RFSTKSERERILKGLKQGRIDILITTHAVYSKDVEFADLGLVVIDEEHRFGVKVKEHLKS 647

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K     +L ++ATPIPRTL ++  G +DIS I   P  RKPI+T II   +   + + + 
Sbjct: 648 KYPHADMLYLSATPIPRTLNMSLNGILDISVIKTPPLERKPIET-IIAKRKSSIIRDAIL 706

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             LS   + Y++   IE   +          ++L     +   I+H +M     +SV + 
Sbjct: 707 RELSREGRVYFVHNSIETMDKVKS-----ELDNLLP--FAKKGIVHAKMPKNQIKSVFER 759

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F NG   +LI+T++IE G+D+     III++A+ FGL+ LHQLRGRVGRG+ ++   LLY
Sbjct: 760 FNNGEFDILISTSIIESGLDIKSVDTIIIDDADRFGLSDLHQLRGRVGRGDRVAYAYLLY 819

Query: 597 HPPLSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
              LS+N+  RL  +        G  +A +D++ R  G ILG  QSG  K        + 
Sbjct: 820 RGKLSENATKRLEYMSEFIERGSGLNLALKDMEIRGYGNILGKDQSG--KIKSVGFSTYL 877

Query: 654 SLLEIARKDAK 664
           SL+E A K+ K
Sbjct: 878 SLIEEAIKELK 888


>gi|326489969|dbj|BAJ94058.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 826

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 232/466 (49%), Gaps = 24/466 (5%)

Query: 196 KKSFPSIAEAFNIIHNPRKAKDF-EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
           + + P      +    PR      + ++  + RL     +   +  L+     +     P
Sbjct: 201 RYNLP------HEKKRPRNLSKLNDPSAWEKRRLKGKLAVQKMVVNLMELYLQRMRQRRP 254

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKTLVALIA 313
              + +   +     P+ PT  Q  A  DI  D+  ++  M R++ GDVG GKT VA+ A
Sbjct: 255 PYRKPEAMDQFASEFPYEPTPDQNQAFIDIENDLTERETPMDRLICGDVGFGKTEVAMRA 314

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIA 372
           +   V  G QA+++AP  ILA QH++ + +   N   I V I +G   +  + + + +I 
Sbjct: 315 IFIVVSTGYQAMVLAPTVILANQHFDVMSERFSNYPDIKVAIFSGAQSKDEKDELITKIT 374

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +G   II+GTHAL  + + Y  L L++VDE+ +FGVQQ+ K+     +  VL ++ATPIP
Sbjct: 375 NGHLQIIVGTHALLTERMAYNNLGLLVVDEEQKFGVQQKEKIASLKASIDVLTLSATPIP 434

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL L   G  D S ++  P  R  +KT +   +R +  +  +K+ L  G + +++ P+I
Sbjct: 435 RTLYLALTGFRDASLMSTPPPERVAVKTYVSAFSR-ESALSAIKLELKRGGQVFYVVPRI 493

Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                   +++ +    L +      +AI HG+    + +  M+ F  G  K+L+ T +I
Sbjct: 494 --------KAIDDVLQFLKDSLPDVPMAIAHGKKVSKNIQLAMEKFSCGEIKILVCTHII 545

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLS 609
           E GID+ +A+ +I++ AE FGLAQL+QLRGRVGR        L Y     LS+ +  RL 
Sbjct: 546 ESGIDIPNANTMIVQYAELFGLAQLYQLRGRVGRSGREGFTHLFYTDKSLLSRIAMDRLG 605

Query: 610 VLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
            ++   D   GF +AE+D+  R  G + G +QSG    +       
Sbjct: 606 AIEEHSDLGQGFHVAEKDMGIRGFGSMFGEQQSGDVANVGVDLFFD 651


>gi|217978360|ref|YP_002362507.1| transcription-repair coupling factor [Methylocella silvestris BL2]
 gi|217503736|gb|ACK51145.1| transcription-repair coupling factor [Methylocella silvestris BL2]
          Length = 1176

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 135/457 (29%), Positives = 226/457 (49%), Gaps = 19/457 (4%)

Query: 224  ARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
             ++R A       ++A  L++       +    +     +  +     P+  T+ Q + I
Sbjct: 577  WQKRKAKMRKRILEMAAGLIKIAAARFTKEAAKLAPPENLYDEFCAGFPYDETEDQLTTI 636

Query: 282  KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
              +L+DM+    M R++ GDVG GKT VAL A  AA   G Q  ++ P  +LA+QHY+  
Sbjct: 637  DAVLEDMASGRPMDRLVCGDVGFGKTEVALRAAFAAAIEGKQVAVIVPTTLLARQHYKNF 696

Query: 342  KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
                 +  + V  ++  +  A  + A    A G   I++GTHA     + Y  L LVI+D
Sbjct: 697  SSRFAHLPVKVAQMSRMVSAADLKAAKAGAASGDIDIVVGTHAALGKGVTYKDLGLVIID 756

Query: 402  EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            E+  FGV+ + +L +     HVL ++ATPIPRTL L   G  ++S I   P  R  ++T 
Sbjct: 757  EEQHFGVKHKERLKELRAEVHVLTLSATPIPRTLQLALTGVRELSIIATPPVDRLAVRTF 816

Query: 462  IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI 520
            I P + +  V E L      G +++++CP+I++ +        +    L +H       I
Sbjct: 817  ITPFDTL-LVREALLRERYRGGQSFYVCPRIDDIQ--------DAAAFLRQHVPEVKFVI 867

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
             HG+M   + E  M +F +G   +L++T ++E G+D+  A+ +I+  A+ FGLAQL+QLR
Sbjct: 868  AHGQMPATELEDKMSAFYDGQFDVLLSTAIVESGLDIPTANTLIVHRADMFGLAQLYQLR 927

Query: 581  GRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILG 635
            GRVGR +  +  +        ++  +  RL VL++ +    GF +A  DL  R  G +LG
Sbjct: 928  GRVGRSKVRAYALFTVPAERAMTAQAEKRLKVLQSLDTLGAGFELASHDLDIRGAGNLLG 987

Query: 636  IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
              QSG         EL+  +L+ A +  K  + +  +
Sbjct: 988  DDQSGHI--REVGYELYQQMLQEAVEALKAGVEEPAE 1022


>gi|68171223|ref|ZP_00544627.1| Transcription-repair coupling factor [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658189|ref|YP_507071.1| transcription-repair coupling factor [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67999343|gb|EAM85988.1| Transcription-repair coupling factor [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88599646|gb|ABD45115.1| transcription-repair coupling factor [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 1134

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 127/442 (28%), Positives = 221/442 (50%), Gaps = 15/442 (3%)

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
           +   R+    + +      LL +    +   G     + +  +       ++ T+ Q  A
Sbjct: 543 SWQQRKTKIKNHIKKIAKELLTIEAARRLSTGKSFFPD-ENYKHFCNEFSYTETEDQLQA 601

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           IKD+  D+S    M R++ GDVG GKT +AL A         Q  I+ P  +L +QH+  
Sbjct: 602 IKDMEHDLSSGKIMNRLICGDVGFGKTEIALRAAFLVASQNYQVAIIVPTTLLCRQHFIV 661

Query: 341 IKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +  +    I ++ ++  + ++  +K  E ++ GQ HIIIGTHA+    + +  L L+I
Sbjct: 662 FTERFKKFPNIKIKQLSKIVARSEIKKTKESLSCGQVHIIIGTHAILAQDVTFANLSLLI 721

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV+Q+  L +  T  HV+ ++ATPIPRTL ++  G  D+S I   P  R  + 
Sbjct: 722 IDEEQQFGVKQKELLKKIKTNVHVISLSATPIPRTLYMSLCGIKDLSLIKTPPKNRLAVT 781

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T          + + +    + G + +++CPQI     SN +S+ ++   L      + A
Sbjct: 782 TYTTYYEET-IIKDAIIREHNRGGRVFYVCPQI-----SNIKSISDKIRKLVPEIKMNTA 835

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
             HG++S    +++M+ F +G   +L+ T++IE G+D+  A+ III NA+ FGLAQL+QL
Sbjct: 836 --HGQLSPTQLDTIMNDFFDGKFTILLTTSIIECGLDIPFANTIIIHNADMFGLAQLYQL 893

Query: 580 RGRVGRGEEISSCILLYHPPLSKNS---YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           +GRVGR         +     +  S      +  + +   GF ++  D+  R  G ++G 
Sbjct: 894 KGRVGRSSTKGFAYFILSEKATNKSAIKLEIIQSIDSINSGFNLSLHDMDIRGFGNLVGE 953

Query: 637 KQSGMPKFLIAQPELHDSLLEI 658
           +QSG  K +    EL+  +LE 
Sbjct: 954 EQSGNIKDI--GIELYQQMLEE 973


>gi|320094383|ref|ZP_08026169.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 178
            str. F0338]
 gi|319978684|gb|EFW10241.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 178
            str. F0338]
          Length = 1194

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 134/471 (28%), Positives = 232/471 (49%), Gaps = 27/471 (5%)

Query: 232  ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            E+    I L  +R+Q K         +    +++    P+  T  Q   I ++  DM + 
Sbjct: 609  EVAKELIRLYAVRQQTKGH---AFGPDTPWQRELEDAFPYVETPDQLVTIDEVKADMEKP 665

Query: 292  NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
              M R+L GDVG GKT +A+ A   A++ G QA ++ P  +L  QH E   +      + 
Sbjct: 666  VPMDRLLTGDVGYGKTEIAVRAAFKAIQDGYQAAVLVPTTLLVTQHLETFSERYAGFPVE 725

Query: 352  VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
            +  ++         +    +A G+  ++IGTHAL   ++ + KL LV++DE+ RFGV+ +
Sbjct: 726  IGTLSRFSTPKQTEEVKAGLASGRIDLVIGTHALLTGAVAFKKLGLVVIDEEQRFGVEHK 785

Query: 412  LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
              L    T   VL M+ATPIPRTL +   G  ++S +   P  R+P+ T +       +V
Sbjct: 786  ETLKALRTDVDVLSMSATPIPRTLEMAVSGIREMSILQTPPEERQPVLTFVGAHTD-AQV 844

Query: 472  IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
               ++  L    + +++  +++        SV  R  SL     + + + HG++ +   E
Sbjct: 845  SAAIRRELLRDGQVFYVHNRVDSIN-----SVAARVQSLVPE--ARVRVAHGKLGEHQLE 897

Query: 532  SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            +V+  F N    +L+ TT++E G+D+ +A+ +I++ A+ FGL+QLHQLRGRVGRG E + 
Sbjct: 898  AVIQDFWNHEFDVLVCTTIVETGLDISNANTLIVDRADVFGLSQLHQLRGRVGRGRERAY 957

Query: 592  CILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPK--- 643
                Y     L++ ++ RL  +    D   G  +A+ DL+ R  G +LG  QSG  +   
Sbjct: 958  AYFFYPGDKALTQTAHERLKTIAANTDLGAGLAVAQRDLEIRGAGNLLGGAQSGHVEGVG 1017

Query: 644  FLIAQPELHDSLLE------IARKDAKHILTQDPDL--TSVRGQSIRILLY 686
            F +    + D++          + D +  L  D  +    VRG+ +R+ +Y
Sbjct: 1018 FDLYVRMVSDAVAAYRGEAPAQKADVRLDLAVDAHIPEDYVRGERLRLEVY 1068


>gi|154507723|ref|ZP_02043365.1| hypothetical protein ACTODO_00205 [Actinomyces odontolyticus ATCC
            17982]
 gi|153797357|gb|EDN79777.1| hypothetical protein ACTODO_00205 [Actinomyces odontolyticus ATCC
            17982]
          Length = 1194

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 134/474 (28%), Positives = 230/474 (48%), Gaps = 33/474 (6%)

Query: 232  ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            E+    I L  +R+Q K         +    +++    P+  T  Q   I ++  DM + 
Sbjct: 609  EVAKELIRLYAVRQQTKGH---AFGPDTPWQRELEDAFPYVETPDQLVTIDEVKADMEKP 665

Query: 292  NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
              M R+L GDVG GKT +A+ A   A++ G QA ++ P  +L  QH E   +      + 
Sbjct: 666  VPMDRLLTGDVGYGKTEIAVRAAFKAIQDGYQAAVLVPTTLLVTQHAETFAERYAGFPVR 725

Query: 352  VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
            +  ++         +    +A G+  ++IGTH+L   ++ + KL LVI+DE+ RFGV+ +
Sbjct: 726  IGTLSRFSTPKETEEVKAGLASGEVDLVIGTHSLLTGTVSFKKLGLVIIDEEQRFGVEHK 785

Query: 412  LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
              L    T   VL M+ATPIPRTL +   G  ++S +   P  R+P+ T +       +V
Sbjct: 786  ETLKALRTDVDVLSMSATPIPRTLEMAISGIREMSILQTPPEERQPVLTFVGAYTD-AQV 844

Query: 472  IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
               ++  L    + +++  +++        SV      L     + +   HG+M++   E
Sbjct: 845  SAAIRRELLRDGQVFYVHNRVDSIS-----SVAAHITELVPE--ARVRTAHGKMNEHQLE 897

Query: 532  SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            +V+  F N    +L+ TT++E G+D+ +A+ +I++ A+ FGL+QLHQLRGRVGRG E + 
Sbjct: 898  AVIQDFWNHEFDVLVCTTIVETGLDISNANTLIVDRADTFGLSQLHQLRGRVGRGRERAY 957

Query: 592  CILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
                Y     L++ ++ RL  +    +   G  +A+ DL+ R  G +LG  QSG  +   
Sbjct: 958  AYFFYPGDKALTETAHERLKTIAANTELGAGLAVAQRDLEIRGAGNLLGGAQSGHVE--G 1015

Query: 647  AQPELHDSLLEIA----RKDA----------KHILTQDPDLTSVRGQSIRILLY 686
               +L+  ++  A    R DA            +    PD   VRG+ +R+ +Y
Sbjct: 1016 VGFDLYVRMVSDAVAAYRGDAPTEKTDVRMDLQVDAHIPD-GYVRGERLRLEVY 1068


>gi|297572061|ref|YP_003697835.1| transcription-repair coupling factor [Arcanobacterium haemolyticum
            DSM 20595]
 gi|296932408|gb|ADH93216.1| transcription-repair coupling factor [Arcanobacterium haemolyticum
            DSM 20595]
          Length = 1168

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 134/504 (26%), Positives = 233/504 (46%), Gaps = 26/504 (5%)

Query: 188  WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
            W+  D L + +  S  +A ++     K    +W     +  A  + +A ++  L    Q 
Sbjct: 538  WVPTDQLDQVTKYSGGDAPSL----NKMGGADWAKTKAKARAAIKQIAKELIRLYA--QR 591

Query: 248  KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
            +   G     +    +++     +  T  Q S I D+ +DM     M R++ GDVG GKT
Sbjct: 592  RATKGHAFGPDTPWQRELEDAFAYIETPDQISTIDDVKRDMESLEPMDRLISGDVGYGKT 651

Query: 308  LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             +A+ A   AV+ G Q  ++ P  +L QQH E   +      + V  ++           
Sbjct: 652  EIAVRAAFKAVQDGKQVAVLVPTTLLVQQHLETFTERYSGFPVTVAGLSRFQTAKEAEGV 711

Query: 368  LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             +    G   ++IGTH L    +++  L LVI+DE+ RFGV+ +  L Q   A  VL M+
Sbjct: 712  RKGAREGTIDVVIGTHRLITGDVRFKDLGLVIIDEEQRFGVEHKEMLKQLYPAVDVLSMS 771

Query: 428  ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            ATPIPRTL +   G   +S +   P  R PI T +   +   ++   +K  L    + ++
Sbjct: 772  ATPIPRTLEMAVTGIRQMSTLATPPEERHPILTYV-GGHEPKQISAAIKRELLRDGQVFY 830

Query: 488  ICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            I  + +        S+ +    + E    + + + HG+M++   E V+ +F +    +L+
Sbjct: 831  IHNRTQ--------SIHKVAAEISELVPEARVGVAHGKMTEHQLEDVIQAFWDKEIDVLV 882

Query: 547  ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNS 604
             TT++E G+D+ +A+ +I+E+A   GL+QLHQLRGRVGRG + +    LY     +++ +
Sbjct: 883  CTTIVETGLDISNANTLIVEDAHKLGLSQLHQLRGRVGRGRDRAYAYFLYPRDKAMTETA 942

Query: 605  YTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
              RL  +        G  +A +DL+ R  G +LG +QSG    +          L +  +
Sbjct: 943  IERLRTIATHSELGAGIHVAMKDLEIRGAGNLLGGEQSGHIAGVGFDL-----YLRMVSE 997

Query: 662  DAKHILTQDPDLTSVRGQSIRILL 685
                +  QD    + +   +RI L
Sbjct: 998  AVAQLTGQDKRSEAEQLADMRIEL 1021


>gi|293189395|ref|ZP_06608118.1| transcription-repair coupling factor [Actinomyces odontolyticus
           F0309]
 gi|292821858|gb|EFF80794.1| transcription-repair coupling factor [Actinomyces odontolyticus
           F0309]
          Length = 767

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 134/474 (28%), Positives = 230/474 (48%), Gaps = 33/474 (6%)

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           E+    I L  +R+Q K         +    +++    P+  T  Q   I ++  DM + 
Sbjct: 182 EVAKELIRLYAVRQQTKGH---AFGPDTPWQRELEDAFPYVETPDQLVTIDEVKADMEKP 238

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R+L GDVG GKT +A+ A   A++ G QA ++ P  +L  QH E   +      + 
Sbjct: 239 VPMDRLLTGDVGYGKTEIAVRAAFKAIQDGYQAAVLVPTTLLVTQHAETFAERYAGFPVR 298

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           +  ++         +    +A G+  ++IGTH+L   ++ + KL LVI+DE+ RFGV+ +
Sbjct: 299 IGTLSRFSTPKETEEVKAGLASGEVDLVIGTHSLLTGTVSFKKLGLVIIDEEQRFGVEHK 358

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             L    T   VL M+ATPIPRTL +   G  ++S +   P  R+P+ T +       +V
Sbjct: 359 ETLKALRTDVDVLSMSATPIPRTLEMAISGIREMSILQTPPEERQPVLTFVGAYTD-AQV 417

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
              ++  L    + +++  +++        SV      L     + +   HG+M++   E
Sbjct: 418 SAAIRRELLRDGQVFYVHNRVDSIS-----SVAAHITELVPE--ARVRTAHGKMNEHQLE 470

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           +V+  F N    +L+ TT++E G+D+ +A+ +I++ A+ FGL+QLHQLRGRVGRG E + 
Sbjct: 471 AVIQDFWNHEFDVLVCTTIVETGLDISNANTLIVDRADTFGLSQLHQLRGRVGRGRERAY 530

Query: 592 CILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
               Y     L++ ++ RL  +    +   G  +A+ DL+ R  G +LG  QSG  +   
Sbjct: 531 AYFFYPGDKALTETAHERLKTIAANTELGAGLAVAQRDLEIRGAGNLLGGAQSGHVE--G 588

Query: 647 AQPELHDSLLEIA----RKDA----------KHILTQDPDLTSVRGQSIRILLY 686
              +L+  ++  A    R DA            +    PD   VRG+ +R+ +Y
Sbjct: 589 VGFDLYVRMVSDAVAAYRGDAPTEKTDVRMDLQVDAHIPD-GYVRGERLRLEVY 641


>gi|253582570|ref|ZP_04859791.1| transcription-repair coupling factor [Fusobacterium varium ATCC
           27725]
 gi|251835440|gb|EES63980.1| transcription-repair coupling factor [Fusobacterium varium ATCC
           27725]
          Length = 983

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 135/432 (31%), Positives = 234/432 (54%), Gaps = 10/432 (2%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             + +   +E++     ++ ++ +   E G   + +    ++   + P+  T SQ  AI+
Sbjct: 407 KRKRQKLEEEMIIFAKEIIEIQAKRAFEKGYVFSHDTVWQEEFEESFPYKETASQLKAIE 466

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           D+ +DM     M R++ GDVG GKT +AL A   A   G Q V+M P  +LAQQHYE   
Sbjct: 467 DVKRDMESDRIMDRVICGDVGYGKTEIALRAAFKASIDGKQVVVMVPTTVLAQQHYERFT 526

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +  +N  + +EI++    +  +++ L +IA G   I+IGTH +    +++  L LV++DE
Sbjct: 527 ERFKNYPVNIEILSRLKSEKEQKEVLNKIAAGTVDIVIGTHRILSSDVKFKDLGLVVIDE 586

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + +FGV+ + +L +      ++ +TATPIPRTL L+ LG  D+S I   P GRKPI+TV 
Sbjct: 587 EQKFGVKAKEQLKKLKNKIDMITLTATPIPRTLNLSLLGIRDLSVIDTPPEGRKPIETVF 646

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
           I  +   ++ E +   ++   + ++I   ++  +    +   E    L  +    +  IH
Sbjct: 647 IEKDD-KKIKEIIMSEIAREGQVFYIFNSVKNIE----KKTNELRKILPSYL--KLDYIH 699

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+M   + ++ +  F+NG   +L++TT++E GID+ +A+ +II+  E  GL+Q++QLRGR
Sbjct: 700 GQMLPKEIKNKIKDFENGDIDMLVSTTIVENGIDIENANTMIIDGVEKLGLSQIYQLRGR 759

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQS 639
           +GRG     C LL     +K +  R   +KN  D   GF ++ ED++ R  GEILG +Q 
Sbjct: 760 IGRGRRKGYCYLLTKEYQTKKAKEREESIKNLGDSGGGFQLSLEDMRIRGAGEILGDRQH 819

Query: 640 GMPKFLIAQPEL 651
           G  +       +
Sbjct: 820 GALETFGYNLYI 831


>gi|170782785|ref|YP_001711119.1| transcription-repair coupling factor [Clavibacter michiganensis
            subsp. sepedonicus]
 gi|169157355|emb|CAQ02542.1| transcription-repair coupling factor [Clavibacter michiganensis
            subsp. sepedonicus]
          Length = 1210

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 125/415 (30%), Positives = 212/415 (51%), Gaps = 13/415 (3%)

Query: 242  LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
             +        G     +    +++    PF  T  Q + I ++ +DM     M R++ GD
Sbjct: 621  KLYSARMASRGHSFPPDTPWQRELEEAFPFMETPDQLTVIDEVKRDMESPIPMDRLVSGD 680

Query: 302  VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            VG GKT +A+ A   AV+ G Q V++ P  +L +QH+E   +      + +  ++    +
Sbjct: 681  VGFGKTEIAVRAAFKAVQDGKQVVMLVPTTLLVKQHFETFSERFAGFPVHLRQLSRFQSE 740

Query: 362  AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
               R+ ++ +  G   ++IGTH L   SI +  + LVI+DE+ RFGV+ +  L +     
Sbjct: 741  KESRETVKGLEDGSVDVVIGTHRLLTGSIAFKDVGLVIIDEEQRFGVEHKDALKKLKANV 800

Query: 422  HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             +L M+ATPIPRTL +   G  ++S +   P  R PI T + P N   ++   ++  L  
Sbjct: 801  DILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFVGP-NSEKQIAAAIRRELLR 859

Query: 482  GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
              + +++  ++        R   E    + E   + +A+ HG+MS+   E V+  F    
Sbjct: 860  EGQVFFVHNRVSSI----NRVASELAELVPE---ARVAVAHGKMSEAMLEQVIVDFWERK 912

Query: 542  CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPP 599
              +L++TT+IE G+D+ +A+ +II+ A+ +GL+QLHQLRGRVGRG E +    LY    P
Sbjct: 913  FDVLVSTTIIETGLDIANANTLIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLYDADKP 972

Query: 600  LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
            LS+ ++ RLS +        G  +A +DL+ R  G +LG +QSG  + +     L
Sbjct: 973  LSETAHDRLSTIAANNELGSGMQVALKDLEIRGAGNLLGGEQSGHIQGVGFDLYL 1027


>gi|323691738|ref|ZP_08105998.1| transcription-repair coupling factor [Clostridium symbiosum
            WAL-14673]
 gi|323504216|gb|EGB20018.1| transcription-repair coupling factor [Clostridium symbiosum
            WAL-14673]
          Length = 1179

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 162/646 (25%), Positives = 272/646 (42%), Gaps = 103/646 (15%)

Query: 50   SSFIDRHYRPKISEIS--EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFY 107
              +  R + P   +I      I+   G +  H  F+    +   I   D  G +      
Sbjct: 432  REYDLRAFCPDEGQIQVLPGEIMVTYGNL--HRGFEYPLIKFVVITEGDMFGGV------ 483

Query: 108  RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS 167
            R+ +  K   ++G+KI         ++   +    Y+ H S  +       +Y     + 
Sbjct: 484  RQKKKSKKTAYQGKKI---------QSFSELAVGDYVVHESHGLG------IYRGIEKIE 528

Query: 168  VDLFKK-IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF--EWTSPA 224
             D   K  I   +        ++    L+     + A+A      P+  K    EW    
Sbjct: 529  QDKIVKDYIK--IEYRDGGNLYLPATRLEGIQKYAGADA----KQPKLNKLGGTEWNKTK 582

Query: 225  RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
             +     + +A ++  L   +Q  +        +     +     PF  T+ Q  AI+  
Sbjct: 583  TKVRGAVKEIAKELVELYASRQESEGYQY--GADTVWQSEFEEMFPFEETEDQLEAIEST 640

Query: 285  LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
             +DM  K  M R++ GDVG GKT +AL A   A++ G Q V + P  ILAQQHY    + 
Sbjct: 641  KRDMESKKIMDRLICGDVGYGKTEIALRAAFKAIQEGKQVVYLVPTTILAQQHYNTFVQR 700

Query: 345  TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
             ++  + V++++       +++ LE +  G   ++IGTH +    + +  L L+I+DE+ 
Sbjct: 701  MKDFPVRVDMMSRFRTATEQKRTLEDLKKGFVDVLIGTHRVLSKDVVFKNLGLLIIDEEQ 760

Query: 405  RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            RFGV  + K+ Q      VL +TATPIPRTL ++ +G  D+S + E P  R PI+T ++ 
Sbjct: 761  RFGVAHKEKIKQLKENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPVDRLPIQTYVME 820

Query: 465  INR--------------------------IDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
             N                           IDE+   +  ++ E                 
Sbjct: 821  YNDEMVREAIHRELARGGQVYYVYNRVNNIDEITNHVAALVPE----------------- 863

Query: 499  NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                             +++   HG+M + + E +M  F NG   +L++TT+IE G+D+ 
Sbjct: 864  -----------------ANVTFAHGQMHEHELERIMLDFVNGDIDVLVSTTIIETGLDIP 906

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE- 615
            +A+ III +A+  GL+QL+Q+RGRVGR    S   L+Y     L + +  RL  ++    
Sbjct: 907  NANTIIIHDADRLGLSQLYQIRGRVGRSNRTSYAFLMYRRDKLLREEAEKRLQAIREFTE 966

Query: 616  --DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
               G  IA  DL+ R  G ILG +Q G  + +     L+  LL  A
Sbjct: 967  LGSGIKIAMRDLELRGAGNILGAEQHGHMEAVGYD--LYCKLLNEA 1010


>gi|224373507|ref|YP_002607879.1| transcription-repair coupling factor [Nautilia profundicola AmH]
 gi|223589861|gb|ACM93597.1| transcription-repair coupling factor [Nautilia profundicola AmH]
          Length = 974

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 138/431 (32%), Positives = 222/431 (51%), Gaps = 19/431 (4%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           ++ Q ++++  PI +  +  ++ +   PF  T  Q   I DIL D   K  M R+L GDV
Sbjct: 438 IKLQAQRQLIEPIPLNFEGVREFIAKAPFVHTPDQAKTINDILDDFKTK-IMDRLLSGDV 496

Query: 303 GSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           G GKT VA++A      +G Q  ++AP  IL  QH+E  K+  ++T I +  +       
Sbjct: 497 GFGKTEVAMVASFVVANSGYQVAVIAPTTILVNQHFESFKERFKDTDIKIAKLDRFTSSK 556

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +++ LE++  G+  III THA     I+Y  L LVI+DE+H+FGV+Q+ KL + +   H
Sbjct: 557 EKKEILEKVKTGEIDIIISTHAGLN--IEYKNLGLVIIDEEHKFGVKQKEKLKEISKNVH 614

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            L M+ATPIPRTL +       IS +   P G++  KT +   N  + + E +   L  G
Sbjct: 615 TLYMSATPIPRTLNMALSQVKSISTLETAPKGKQSTKTFVKEWNE-NLIKEVILRELRRG 673

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            + ++I   I   ++       +    +       I ++H +++    E  +  F  G  
Sbjct: 674 GQIFYIYNNIAYIEQKK-----KELQKILPDL--RILVLHAKLTPAQIEKGLVDFIAGKY 726

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPL 600
            L + TT++E GI + + + +I+ENA+ FG+A LHQ+RGRVGRG+       L      L
Sbjct: 727 DLALTTTIVESGIHIPNVNTVIVENADKFGIADLHQIRGRVGRGKHEGYAYFLVKNKDEL 786

Query: 601 SKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDS 654
           S+++  RL  L+       G ++A  DL+ R  G ILG +QSG  K   + +    L D+
Sbjct: 787 SEDAKKRLLALEENSFLGSGQVLAMRDLEIRGGGNILGAEQSGQIKGVGYSMYVKMLEDT 846

Query: 655 LLEIARKDAKH 665
           L E++ K  K 
Sbjct: 847 LKELSGKKVKE 857


>gi|148273452|ref|YP_001223013.1| putative transcription-repair coupling factor [Clavibacter
            michiganensis subsp. michiganensis NCPPB 382]
 gi|147831382|emb|CAN02340.1| putative transcription-repair coupling factor [Clavibacter
            michiganensis subsp. michiganensis NCPPB 382]
          Length = 1210

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 124/415 (29%), Positives = 212/415 (51%), Gaps = 13/415 (3%)

Query: 242  LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
             +        G     +    +++    PF  T  Q + I ++ +DM     M R++ GD
Sbjct: 621  KLYSARMASRGHSFPPDTPWQRELEEAFPFMETPDQLTVIDEVKRDMESPIPMDRLVSGD 680

Query: 302  VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            VG GKT +A+ A   AV+ G Q V++ P  +L +QH+E   +      + +  ++    +
Sbjct: 681  VGFGKTEIAVRAAFKAVQDGKQVVMLVPTTLLVKQHFETFSERFAGFPVHLRQLSRFQSE 740

Query: 362  AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
               R+ ++ +  G   ++IGTH L   +I +  + LVI+DE+ RFGV+ +  L +     
Sbjct: 741  KESRETVKGLEDGSVDVVIGTHRLLTGNIAFKDVGLVIIDEEQRFGVEHKDALKKLKANV 800

Query: 422  HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             +L M+ATPIPRTL +   G  ++S +   P  R PI T + P N   ++   ++  L  
Sbjct: 801  DILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFVGP-NSEKQIAAAIRRELLR 859

Query: 482  GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
              + +++  ++        R   E    + E   + +A+ HG+MS+   E V+  F    
Sbjct: 860  EGQVFFVHNRVSSI----NRVASELAELVPE---ARVAVAHGKMSEAMLEQVIVDFWERK 912

Query: 542  CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPP 599
              +L++TT+IE G+D+ +A+ +II+ A+ +GL+QLHQLRGRVGRG E +    LY    P
Sbjct: 913  FDVLVSTTIIETGLDIANANTLIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLYDADKP 972

Query: 600  LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL 651
            LS+ ++ RLS +        G  +A +DL+ R  G +LG +QSG  + +     L
Sbjct: 973  LSETAHDRLSTIAANNELGSGMQVALKDLEIRGAGNLLGGEQSGHIQGVGFDLYL 1027


>gi|208435421|ref|YP_002267087.1| transcription-repair coupling factor [Helicobacter pylori G27]
 gi|208433350|gb|ACI28221.1| transcription-repair coupling factor [Helicobacter pylori G27]
          Length = 999

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 137/412 (33%), Positives = 217/412 (52%), Gaps = 21/412 (5%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++V     +    +  F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A
Sbjct: 466 KMDVHLAELEIFKSHAGFEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A   G Q+ ++ P  +LA QH+E ++   +N  + V  +      + + K L+ +  
Sbjct: 526 IFCAFLNGFQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVEL 583

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G   +++GTHA+     ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 584 GLVDVLVGTHAIL--GTKFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 641

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 642 TLNMALSQIKGISSLKTPPTDRKPSRTFLKEKN--DELLKEIIYRELRRNGQIFYIHNHI 699

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +        L       IAI+H +++  + E +M  F  G  ++L+ T+++E
Sbjct: 700 ASISKVKTK-----LEELIPKL--KIAILHSQINAYESEEIMLEFAKGNYQVLLCTSIVE 752

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ III+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 753 SGIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLA 812

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  IA  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 813 LEKNSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|315606044|ref|ZP_07881075.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 180
            str. F0310]
 gi|315312326|gb|EFU60412.1| transcription-repair coupling factor [Actinomyces sp. oral taxon 180
            str. F0310]
          Length = 1194

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 130/473 (27%), Positives = 229/473 (48%), Gaps = 31/473 (6%)

Query: 232  ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
            E+    I L  +R+Q K         +    +++    P+  T  Q   I ++  DM + 
Sbjct: 609  EVAKELIRLYAVRQQTKGH---AFGPDTPWQRELEDAFPYVETPDQLVTIDEVKADMEKA 665

Query: 292  NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
              M R+L GDVG GKT +A+ A   A++ G QA ++ P  +L  QH E   +      + 
Sbjct: 666  VPMDRLLTGDVGYGKTEIAVRAAFKAIQDGYQAAVLVPTTLLVTQHAETFSERYAGFPVR 725

Query: 352  VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
            +  ++         +    +  G+  ++IGTH+L   ++ + KL LVI+DE+ RFGV+ +
Sbjct: 726  IGTLSRFSTPKETEEVKAGLVSGEVDLVIGTHSLLTGTVSFKKLGLVIIDEEQRFGVEHK 785

Query: 412  LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
              L    T   VL M+ATPIPRTL +   G  ++S +   P  R+P+ T +       +V
Sbjct: 786  ETLKALRTDVDVLSMSATPIPRTLEMAISGIREMSILQTPPEERQPVLTFVGAYTD-AQV 844

Query: 472  IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
               ++  L    + +++  +++        SV      L     + +   HG+M++   E
Sbjct: 845  SAAIRRELLRDGQVFYVHNRVDSIS-----SVAAHIGELVPE--ARVRTAHGKMNEHQLE 897

Query: 532  SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            +V+  F N    +L+ TT++E G+D+ +A+ +I++ A+ FGL+QLHQLRGRVGRG E + 
Sbjct: 898  AVIQDFWNHEFDVLVCTTIVETGLDISNANTLIVDRADTFGLSQLHQLRGRVGRGRERAY 957

Query: 592  CILLY--HPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
                Y     L++ ++ RL  +    +   G  +A+ DL+ R  G +LG  QSG  +   
Sbjct: 958  AYFFYPGDKALTETAHERLKTIAANTELGAGLAVAQRDLEIRGAGNLLGGAQSGHVE--G 1015

Query: 647  AQPELHDSLLEIA-----------RKDAKHILTQDPDLTS--VRGQSIRILLY 686
               +L+  ++  A           + D +  L  D  +    +RG+ +R+ +Y
Sbjct: 1016 VGFDLYVRMVSDAVAAYRGETPAEKTDVRMDLQVDAHIPDGYIRGERLRLEVY 1068


>gi|257462445|ref|ZP_05626858.1| transcription-repair coupling factor [Fusobacterium sp. D12]
          Length = 781

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 136/440 (30%), Positives = 236/440 (53%), Gaps = 16/440 (3%)

Query: 224 ARERLA-YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
            R+R    +E+L     ++ ++ +     G   + +    ++   + P++ T +Q+ AI+
Sbjct: 265 QRKREKLQEEILEFAKEIVEIQARRNSTQGFRYSSDTVWQEEFEESFPYTETAAQKKAIQ 324

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           D+ QDM     M R++ GDVG GKT +A+ A   A+    Q V++AP  +LA+QHY+  +
Sbjct: 325 DVKQDMEMGKVMDRLICGDVGYGKTEIAIRATFKAIMDQKQVVVLAPTTVLAEQHYQRFQ 384

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +   N  I + +++       +++ LE+I +G   +IIGT  L  D +++  L  +I+DE
Sbjct: 385 ERFLNYPIEIAVLSRMKTAKEQKEILEKIKNGSIDLIIGTSRLLSDDLEFKDLGFLIIDE 444

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + +FGV+ + K  +     ++L MTATPIPRTL L+ LG  D+S +   P GRK +KT  
Sbjct: 445 EQKFGVKAKEKFKKMRGNLNILAMTATPIPRTLNLSLLGIRDLSIVDIPPEGRKAVKTFF 504

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAI 520
           I   + + +++ +   LS   + ++I   +        + + E+   L +   S   +  
Sbjct: 505 IE-KKEETIVKAILQELSREGQVFYIFNSV--------KRIQEKVKELEKILPSYVRVDC 555

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG+MS  + +  ++ F+N    +L++TT++E GID+ +A+ +IIE  E  GL+Q++QLR
Sbjct: 556 IHGKMSGKELKYTIEQFENMQIDVLVSTTILENGIDIENANTMIIEGMERLGLSQIYQLR 615

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT--EDGFLIAEEDLKQRKEGEILGIKQ 638
           GR+GRG   S C  +     SK +  R   L       G  ++ ED++ R  GEILG KQ
Sbjct: 616 GRIGRGRRQSYCYCIVADYKSKKAEEREKSLMELGKGSGLELSMEDMRIRGAGEILGEKQ 675

Query: 639 SGMPKFLIAQPELHDSLLEI 658
            GM + L      +  +LE 
Sbjct: 676 HGMIETL--GYHFYMKMLEE 693


>gi|317010243|gb|ADU80823.1| transcription-repair coupling factor [Helicobacter pylori India7]
          Length = 999

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 138/412 (33%), Positives = 216/412 (52%), Gaps = 21/412 (5%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++V     +    +  F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A
Sbjct: 466 KMDVHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +      G Q+ ++ P  +LA QH+E ++   +N  + V  +      + + K L+ +  
Sbjct: 526 IFCTFLNGFQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVEL 583

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           GQ   +IGTHA+     ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 584 GQVDALIGTHAIL--GAKFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 641

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 642 TLNMALSQIKGISSLKTPPTDRKPSRTFLKEKN--DELLKEIIYRELRRNGQIFYIHNHI 699

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +        L       IAI+H +++  + E +M  F  G  ++L+ T+++E
Sbjct: 700 ASISKVKTK-----LEELIPKL--KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVE 752

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ III+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 753 SGIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLA 812

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  IA  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 813 LEKNSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|308064333|gb|ADO06220.1| transcription-repair coupling factor [Helicobacter pylori Sat464]
          Length = 999

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 142/454 (31%), Positives = 232/454 (51%), Gaps = 21/454 (4%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P K +  + +    +     +LL     ++ +  +    +G  ++      +    +  F
Sbjct: 424 PTKDRLGKGSFLKLKAKVKTKLLEIASKIIELAAERNLILGKKMDTHLAELEVFKSHAGF 483

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P  
Sbjct: 484 EYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPTT 543

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LA QH+E ++   +N  + V  +      + + K L+ +  G   +++GTHA+F    +
Sbjct: 544 LLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVELGLIDVLVGTHAIF--CAK 599

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +   
Sbjct: 600 FKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKIP 659

Query: 452 PAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           P  RKP +T +   N  DE++ E +   L    + ++I   I    +   +        L
Sbjct: 660 PTDRKPSRTFLKEKN--DELLKEIIHRELRRNGQIFYIHNHIASISKVKTK-----LEEL 712

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+NA++
Sbjct: 713 IPKL--KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQN 770

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDL 625
           FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA  DL
Sbjct: 771 FGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDL 830

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           + R  G +LG  QSG  K +     L+  +LE A
Sbjct: 831 EIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|297611935|ref|NP_001068018.2| Os11g0533100 [Oryza sativa Japonica Group]
 gi|255680143|dbj|BAF28381.2| Os11g0533100 [Oryza sativa Japonica Group]
          Length = 823

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 139/459 (30%), Positives = 238/459 (51%), Gaps = 26/459 (5%)

Query: 210 HNPRKAKDF-EWTSPARERLA---YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI 265
             PR      + ++  + RL      + +   +  L +++  +K    P  V      + 
Sbjct: 206 QRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKRPPYPKPV---GMDQF 262

Query: 266 LRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
               P+ PT  Q  A  D+ +D+  ++  M R++ GDVG GKT VA+ A+   + AG QA
Sbjct: 263 TAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQA 322

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++AP  ILA+QHY+ + +   N   I V + +G   +  + + + +I +G  HII+GTH
Sbjct: 323 MVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTH 382

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
           A+  + + Y  L L++VDE+ +FGVQQ+ K+     +  VL ++ATPIPRTL L   G  
Sbjct: 383 AVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFR 442

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           D S ++  P  R  ++T +   ++ +  +  +K  L+ G + +++ P+I        +++
Sbjct: 443 DASLMSTPPPERVAVRTYVSGFSK-ERALSAIKFELARGGQVFYVVPRI--------KAI 493

Query: 504 VERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +    L +      +A+ HG+    + +  M+ F  G  K+L+ T +IE GID+ +A+ 
Sbjct: 494 DDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANT 553

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---G 617
           ++++ AE FGLAQL+QLRGRVGR        L Y     LSK +  RL  ++   D   G
Sbjct: 554 MVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQG 613

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
           F +AE+D+  R  G + G +QSG         +L   +L
Sbjct: 614 FHVAEKDMGIRGFGSLFGEQQSG--DVANVGIDLFFDML 650


>gi|88607738|ref|YP_504735.1| transcription-repair coupling factor [Anaplasma phagocytophilum HZ]
 gi|88598801|gb|ABD44271.1| transcription-repair coupling factor [Anaplasma phagocytophilum HZ]
          Length = 1139

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 136/453 (30%), Positives = 225/453 (49%), Gaps = 24/453 (5%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
            +   +  +  ++R+  D++    +    MRK       +P      +     +  P+  
Sbjct: 532 SSAWHDKQNKLKKRI--DDIAKTLLHAEAMRKLADGSRFLP----SSLYIDFCKECPYVE 585

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIG 331
           T+ Q  AI D+  D+++   M R++ GDVG GKT +AL A    V      Q  ++ P  
Sbjct: 586 TEDQLKAIADVENDLARGKVMDRLICGDVGFGKTEIALRAAFLVVNEDITCQVAVLVPTT 645

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +L +QH+   K+  +N ++ ++ ++       +++  E +  G  +IIIGT AL  DSIQ
Sbjct: 646 LLCRQHFLAFKERFKNYKVNIQQLS-KATAKKKQQIREGLEEGSINIIIGTSALLSDSIQ 704

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+I+DE+  FGVQQ+ KL       HVL ++ATPIPRTL ++     D+S +   
Sbjct: 705 FLDLRLLIIDEEQHFGVQQKEKLRLLKHDVHVLSLSATPIPRTLHMSLSNIKDLSILRTP 764

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P GR  ++  I   +    +   +   ++ G + ++ CP I + +         R   L 
Sbjct: 765 PIGRTTVEISITHFDE-KTIKTAILNEVNRGGRVFFTCPLIADIEPVLT-----RLQKLV 818

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 IA+ HG  + +  + +M+ F +G   LL+ T++IE GID+  A+ III NA+ F
Sbjct: 819 PEV--KIAVAHGGTAPLALDKIMNDFFDGKFSLLLTTSIIESGIDIPFANTIIIYNADMF 876

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS--YTRLSVLKNTE---DGFLIAEEDLK 626
           GLAQL+QL+GRVGR        L+     + NS    RL  LK+      GF ++ +D+ 
Sbjct: 877 GLAQLYQLKGRVGRSTTQGYAYLILSNKATSNSPGMKRLEALKSLNSVGSGFALSLQDMD 936

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G ++G +QSG         EL+  +LE A
Sbjct: 937 MRGFGNLVGEEQSG--NIKEVGIELYHRMLEEA 967


>gi|73667378|ref|YP_303394.1| transcription-repair coupling factor [Ehrlichia canis str. Jake]
 gi|72394519|gb|AAZ68796.1| transcription-repair coupling factor [Ehrlichia canis str. Jake]
          Length = 1128

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 131/456 (28%), Positives = 225/456 (49%), Gaps = 19/456 (4%)

Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIAL--LLMRKQFKKEIGIPINVEGKIAQKILR 267
            NP    D   ++  ++R    +    +IA   L +    K   G     + +  Q    
Sbjct: 527 QNPNVTLDKLGSTSWQQRKTKIKNHIKKIARELLAIEAARKLSTGQIFCKD-ENYQHFCN 585

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
              ++ T+ Q  AIKD+  D+S    M R++ GDVG GKT +AL A         Q  ++
Sbjct: 586 EFSYTETEDQLQAIKDMEHDLSSGKIMNRLICGDVGFGKTEIALRAAFLVANKNYQVAVI 645

Query: 328 APIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P  +L +QH+    +  +    I ++ ++  + ++  +K  E ++ GQ  IIIGTHA+ 
Sbjct: 646 VPTTLLCRQHFIVFTERFKKFPNIKIKQLSKIVERSEIKKTKESLSCGQVQIIIGTHAIL 705

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
              + +  L L+I+DE+ +FGV+Q+  L +  T  HV+ ++ATPIPRTL ++  G  D+S
Sbjct: 706 AKDVTFANLSLLIIDEEQQFGVKQKESLKKIKTNVHVISLSATPIPRTLYMSLCGIKDLS 765

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
            I   P  R P+       +  D +I + +    + G + +++CPQI     SN +S+ +
Sbjct: 766 LIKTSPKNRLPVTICTTHYD--DTIIKDAIIREHNRGGRVFYVCPQI-----SNIKSISD 818

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
               L       I   HG++     +++M+ F +G   +L+ T++IE G+D+  A+ III
Sbjct: 819 NLTKLVPGI--KINTAHGQLPPTQLDTIMNDFFDGKFTILLTTSIIECGLDIPFANTIII 876

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK---NSYTRLSVLKNTEDGFLIAE 622
            NA+ FGLAQL+QL+GRVGR         +    ++         +  + +   GF ++ 
Sbjct: 877 HNADMFGLAQLYQLKGRVGRSNIKGFVYFILSEKVTNKPTTKLEIIQSINSISSGFTLSL 936

Query: 623 EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            D+  R  G ++G +QSG  K      EL+  +LE 
Sbjct: 937 HDMDIRGFGNLVGEEQSGNIKD--VGIELYQQMLEE 970


>gi|317060106|ref|ZP_07924591.1| transcription-repair coupling factor [Fusobacterium sp. D12]
 gi|313685782|gb|EFS22617.1| transcription-repair coupling factor [Fusobacterium sp. D12]
          Length = 752

 Score =  300 bits (767), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 136/440 (30%), Positives = 236/440 (53%), Gaps = 16/440 (3%)

Query: 224 ARERLA-YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
            R+R    +E+L     ++ ++ +     G   + +    ++   + P++ T +Q+ AI+
Sbjct: 236 QRKREKLQEEILEFAKEIVEIQARRNSTQGFRYSSDTVWQEEFEESFPYTETAAQKKAIQ 295

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           D+ QDM     M R++ GDVG GKT +A+ A   A+    Q V++AP  +LA+QHY+  +
Sbjct: 296 DVKQDMEMGKVMDRLICGDVGYGKTEIAIRATFKAIMDQKQVVVLAPTTVLAEQHYQRFQ 355

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +   N  I + +++       +++ LE+I +G   +IIGT  L  D +++  L  +I+DE
Sbjct: 356 ERFLNYPIEIAVLSRMKTAKEQKEILEKIKNGSIDLIIGTSRLLSDDLEFKDLGFLIIDE 415

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           + +FGV+ + K  +     ++L MTATPIPRTL L+ LG  D+S +   P GRK +KT  
Sbjct: 416 EQKFGVKAKEKFKKMRGNLNILAMTATPIPRTLNLSLLGIRDLSIVDIPPEGRKAVKTFF 475

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAI 520
           I   + + +++ +   LS   + ++I   +        + + E+   L +   S   +  
Sbjct: 476 IE-KKEETIVKAILQELSREGQVFYIFNSV--------KRIQEKVKELEKILPSYVRVDC 526

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG+MS  + +  ++ F+N    +L++TT++E GID+ +A+ +IIE  E  GL+Q++QLR
Sbjct: 527 IHGKMSGKELKYTIEQFENMQIDVLVSTTILENGIDIENANTMIIEGMERLGLSQIYQLR 586

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT--EDGFLIAEEDLKQRKEGEILGIKQ 638
           GR+GRG   S C  +     SK +  R   L       G  ++ ED++ R  GEILG KQ
Sbjct: 587 GRIGRGRRQSYCYCIVADYKSKKAEEREKSLMELGKGSGLELSMEDMRIRGAGEILGEKQ 646

Query: 639 SGMPKFLIAQPELHDSLLEI 658
            GM + L      +  +LE 
Sbjct: 647 HGMIETL--GYHFYMKMLEE 664


>gi|149194843|ref|ZP_01871937.1| transcription-repair coupling factor [Caminibacter mediatlanticus
           TB-2]
 gi|149135002|gb|EDM23484.1| transcription-repair coupling factor [Caminibacter mediatlanticus
           TB-2]
          Length = 981

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 146/487 (29%), Positives = 249/487 (51%), Gaps = 24/487 (4%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
           D        ++L   +     IA  +++   K+E+  PI +  +  +  ++  PF+ T  
Sbjct: 417 DKLGKGTFAKKLTKIKEKVYAIAADIVKLAAKREVSSPIKLNFEGVKDFIKKAPFTHTND 476

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  AI +I+ D   K  M R+L GDVG GKT VA++A      +G Q  ++AP  IL  Q
Sbjct: 477 QLKAINEIINDFKTK-IMDRLLTGDVGFGKTEVAMVASFIVANSGYQVAVIAPTTILVNQ 535

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           HYE  K+  ++T I +  +        +++ +E++ +G+  I+I THA     ++Y  L 
Sbjct: 536 HYESFKERFKDTNIKIAKLDRFTSSKGKKEIIEKLKNGEIDILISTHAGLN--VEYKNLG 593

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           LVI+DE+H+FGV+Q+ KL + +   H+L M+ATPIPRTL +       IS + E P G++
Sbjct: 594 LVIIDEEHKFGVKQKEKLKELSDKVHMLYMSATPIPRTLNMALSQIKSISNLEEAPKGKQ 653

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             KT +   N  + + E +   +  G + ++I   I    E   + +++   +L      
Sbjct: 654 NTKTFVKEWNE-NLIKEAILREIRRGGQIFYIYNNIAYI-EHKKKELLDILPNL------ 705

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I  +H +M+    E  +  F N    L + TT++E GI + + + +I+ENA+ FG+A L
Sbjct: 706 RILTLHAKMTPNQIEKGLVDFINKKYDLALTTTIVESGIHIPNVNTVIVENADKFGIADL 765

Query: 577 HQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           HQ+RGRVGRG+       L      LS+++  RL  L+       G ++A +DL+ R  G
Sbjct: 766 HQIRGRVGRGKHEGYAYFLVKNKEELSEDAKKRLLALEENSFLGSGQVLAMKDLEIRGGG 825

Query: 632 EILGIKQSGMPK---FLIAQPELHDSLLE-----IARKDAKHILTQDPDLTSVRGQSIRI 683
            +LG +QSG  K   + +    L D+L E       ++D +  L  +  +++   +  R+
Sbjct: 826 NLLGAEQSGQIKGIGYSMYLKLLEDTLKEMLGKKEEKEDVEVKLNINAYISNELIKEDRL 885

Query: 684 LLYLYQY 690
            L LY+ 
Sbjct: 886 RLDLYKR 892


>gi|108864445|gb|ABG22504.1| CarD-like transcriptional regulator family protein, expressed
           [Oryza sativa Japonica Group]
 gi|215767702|dbj|BAG99930.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 590

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 135/427 (31%), Positives = 228/427 (53%), Gaps = 22/427 (5%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLR 296
           +  L +++  +K    P  V      +     P+ PT  Q  A  D+ +D+  ++  M R
Sbjct: 5   LMELYLQRMRQKRPPYPKPV---GMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDR 61

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEII 355
           ++ GDVG GKT VA+ A+   + AG QA+++AP  ILA+QHY+ + +   N   I V + 
Sbjct: 62  LICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMF 121

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +G   +  + + + +I +G  HII+GTHA+  + + Y  L L++VDE+ +FGVQQ+ K+ 
Sbjct: 122 SGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIA 181

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
               +  VL ++ATPIPRTL L   G  D S ++  P  R  ++T +   ++ +  +  +
Sbjct: 182 SYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSK-ERALSAI 240

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVM 534
           K  L+ G + +++ P+I        +++ +    L +      +A+ HG+    + +  M
Sbjct: 241 KFELARGGQVFYVVPRI--------KAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAM 292

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F  G  K+L+ T +IE GID+ +A+ ++++ AE FGLAQL+QLRGRVGR        L
Sbjct: 293 EKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYL 352

Query: 595 LYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
            Y     LSK +  RL  ++   D   GF +AE+D+  R  G + G +QSG         
Sbjct: 353 FYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSG--DVANVGI 410

Query: 650 ELHDSLL 656
           +L   +L
Sbjct: 411 DLFFDML 417


>gi|109946913|ref|YP_664141.1| transcription-repair coupling factor [Helicobacter acinonychis str.
           Sheeba]
 gi|109714134|emb|CAJ99142.1| transcription-repair coupling factor [Helicobacter acinonychis str.
           Sheeba]
          Length = 1004

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 138/454 (30%), Positives = 229/454 (50%), Gaps = 21/454 (4%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P K +  + +    +     +LL     ++ +  +    +G  ++      +    +  F
Sbjct: 424 PTKDRLGKGSFLKLKAKVRTKLLEIASKIIELAAERNLILGKKMDTHLAELEIFKTHAGF 483

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  QE AI +I +D+     M R+L GDVG GKT VA+ A+  A   G Q+ ++ P  
Sbjct: 484 EYTNDQEKAIAEISKDLGSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPTT 543

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LA QH+E ++   +N  + V  +   +    + K L+ +  G   +++GTHA+     +
Sbjct: 544 LLAHQHFETLRARFENFGVKVARLDRYVS--EKNKLLKAVESGLIDVLVGTHAIL--GTK 599

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L++VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +   
Sbjct: 600 FKNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTP 659

Query: 452 PAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           P  RKP +T +   N  DE++ E +   L    + ++I   I    +       +   +L
Sbjct: 660 PTDRKPSRTFLKEKN--DELLKEIIHRELRRNGQIFYIHNHIASISKVK-----KELENL 712

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+NA++
Sbjct: 713 IPKL--KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQN 770

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDL 625
           FGLA LHQLRGRVGRG++   C  L      L+  +  RL  L+       G  IA  DL
Sbjct: 771 FGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNDQALKRLLALEKNSYLGSGESIAYHDL 830

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           + R  G +LG  QSG  K +     L+  +LE A
Sbjct: 831 EIRGGGNLLGQDQSGHIKNIGYS--LYTRMLEDA 862


>gi|323485663|ref|ZP_08091001.1| hypothetical protein HMPREF9474_02752 [Clostridium symbiosum
            WAL-14163]
 gi|323401013|gb|EGA93373.1| hypothetical protein HMPREF9474_02752 [Clostridium symbiosum
            WAL-14163]
          Length = 1179

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 161/644 (25%), Positives = 270/644 (41%), Gaps = 99/644 (15%)

Query: 50   SSFIDRHYRPKISEIS--EERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFY 107
              +  R + P   +I      I+   G +  H  F+    +   I   D  G +      
Sbjct: 432  REYDLRAFCPDEGQIQVLPGEIMVTYGNL--HRGFEYPLIKFVVITEGDMFGGV------ 483

Query: 108  RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS 167
            R+ +  K   ++G+KI         ++   +    Y+ H S  +       +Y     + 
Sbjct: 484  RQKKKRKKTAYQGKKI---------QSFSELAVGDYVVHESHGLG------IYRGIEKIE 528

Query: 168  VDLFKK-IIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARE 226
             D   K  I   +        ++    L+     + A+A     N  K    EW     +
Sbjct: 529  QDKIVKDYIK--IEYRDGGNLYLPATRLEGIQKYAGADARQPKLN--KLGGTEWNKTKTK 584

Query: 227  RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286
                 + +A ++  L   +Q  +        +     +     PF  T+ Q  AI+   +
Sbjct: 585  VRGAVKEIAKELVELYASRQESEGYQY--GADTVWQSEFEEMFPFEETEDQLEAIESTKR 642

Query: 287  DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346
            DM  K  M R++ GDVG GKT +AL A   A++ G Q V + P  ILAQQHY    +  +
Sbjct: 643  DMESKKIMDRLICGDVGYGKTEIALRAAFKAIQEGKQVVYLVPTTILAQQHYNTFVQRMK 702

Query: 347  NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
            +  + V++++       +++ L  +  G   ++IGTH +    + +  L L+I+DE+ RF
Sbjct: 703  DFPVRVDMMSRFRTATEQKRTLGDLKKGFVDVLIGTHRVLSKDVVFKNLGLLIIDEEQRF 762

Query: 407  GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
            GV  + K+ Q      VL +TATPIPRTL ++ +G  D+S + E P  R PI+T ++  N
Sbjct: 763  GVAHKEKIKQLKENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPVDRLPIQTYVMEYN 822

Query: 467  R--------------------------IDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
                                       IDE+   +  ++ E                   
Sbjct: 823  DEMVREAIHRELARGGQVYYVYNRVNNIDEITNHVAALVPE------------------- 863

Query: 501  RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
                           +++   HG+M + + E +M  F NG   +L++TT+IE G+D+ +A
Sbjct: 864  ---------------ANVTFAHGQMHEHELERIMLDFVNGDIDVLVSTTIIETGLDIPNA 908

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE--- 615
            + III +A+  GL+QL+Q+RGRVGR    S   L+Y     L + +  RL  ++      
Sbjct: 909  NTIIIHDADRLGLSQLYQIRGRVGRSNRTSYAFLMYRRDKLLREEAEKRLQAIREFTELG 968

Query: 616  DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
             G  IA  DL+ R  G ILG +Q G  + +     L+  LL  A
Sbjct: 969  SGIKIAMRDLELRGAGNILGAEQHGHMEAVGYD--LYCKLLNEA 1010


>gi|224418280|ref|ZP_03656286.1| transcription-repair coupling factor [Helicobacter canadensis MIT
           98-5491]
 gi|313141813|ref|ZP_07804006.1| transcription-repair coupling factor [Helicobacter canadensis MIT
           98-5491]
 gi|313130844|gb|EFR48461.1| transcription-repair coupling factor [Helicobacter canadensis MIT
           98-5491]
          Length = 1004

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 138/429 (32%), Positives = 217/429 (50%), Gaps = 23/429 (5%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           I  L  +++     GI I+   +          F  TK Q  AI++I +D+S    M R+
Sbjct: 463 IIALAAKREL--IDGIIIDTNKEEILVFQGQSGFVYTKDQNQAIQEIFKDLSSGRVMDRL 520

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           L GDVG GKT VA+ AM A   +G QA I+ P  +LA QH+  IK   +   I V  +  
Sbjct: 521 LSGDVGFGKTEVAMNAMLACFLSGYQAAIITPTTLLAYQHFLTIKARFEAFGIKVARLDR 580

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +    ++  LE +  G   +++GTHAL      + KL L++VDE+H+FGV+Q+ K+ + 
Sbjct: 581 YVSAKEKKSILEGLKQGSVDVVVGTHALLNA--VFKKLALIVVDEEHKFGVKQKEKIKEI 638

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERL 475
           +   H+L M+ATPIPRTL +       +S++ E P+ R P +T +   +     EV+   
Sbjct: 639 SQNIHLLSMSATPIPRTLNMALSHIKGLSELKEAPSQRLPTRTFVKTYSDSLFKEVV--- 695

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              L  G + ++I   I    +            L       IAI+H ++S  + E ++ 
Sbjct: 696 LRELRRGGQVFYIHNNISSINQRKE-------EILSIMPHLKIAILHSQISAQESEDIIM 748

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F  G   LL+ T+++E GI + +A+ I+++ ++ FG+A LHQLRGRVGRG +   C  L
Sbjct: 749 EFAKGGFNLLLCTSIVESGIHLPNANTILVDRSDCFGIADLHQLRGRVGRGSKEGFCYFL 808

Query: 596 YHPP--LSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
              P  +++ +  RL  L+       G  +A  DL+ R  G +LG  QSG  K +     
Sbjct: 809 IEDPNKITQEAQKRLMALEKNAYLGSGGALAYHDLEIRGGGNLLGEAQSGHIKNIGYSLY 868

Query: 651 LHDSLLEIA 659
           L   +LE A
Sbjct: 869 L--KMLEEA 875


>gi|308185328|ref|YP_003929461.1| transcription-repair coupling factor [Helicobacter pylori SJM180]
 gi|308061248|gb|ADO03144.1| transcription-repair coupling factor [Helicobacter pylori SJM180]
          Length = 999

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 137/412 (33%), Positives = 216/412 (52%), Gaps = 21/412 (5%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++      +    +  F  T+ QE AI +I +D+S    M R+L GDVG GKT VA+ A
Sbjct: 466 KMDTHLAELEVFKSHAGFEYTRDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A   G Q+ ++ P  +LA QH+E ++   +N  + V  +      + + K L+ +  
Sbjct: 526 IFCAFLNGFQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVEL 583

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           GQ  ++IGTHA+     ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 584 GQVDVLIGTHAIL--GAKFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 641

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 642 TLNMALSQIKGISSLKTPPTDRKPSRTFLKEKN--DELLKEIIYRELRRNGQIFYIHNHI 699

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +        L       IAI+H +++    E +M  F  G  ++L+ T+++E
Sbjct: 700 ASISKVKTK-----LEELIPKL--KIAILHSQINANKSEEIMLEFAKGNYQVLLCTSIVE 752

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ III+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 753 SGIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLA 812

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  IA  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 813 LEKNSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|224372896|ref|YP_002607268.1| ATP-dependent DNA helicase RecG [Nautilia profundicola AmH]
 gi|223589754|gb|ACM93490.1| ATP-dependent DNA helicase RecG [Nautilia profundicola AmH]
          Length = 592

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 183/646 (28%), Positives = 284/646 (43%), Gaps = 65/646 (10%)

Query: 23  YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF 82
               L K+           ++L    P  + D +    I              I +    
Sbjct: 2   TKEDLEKLKKI---GVKSPLELALIKPKEYEDNYLYSYI---IPGSQA-FEAEILEVK-- 52

Query: 83  QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142
           +  K    K  L +    I  +FF  K +  ++VF  G  I + G+IK       +V P 
Sbjct: 53  KSPKVTRIKFYLKNINQIIWGVFFQFK-KWHESVFKTGNTIFIRGEIKNH----QIVQPK 107

Query: 143 YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA--LSRLPVLPEWIEKDLLQKKSFP 200
            I   ++      I  +Y     L++   + +I +   L  L +LPE I           
Sbjct: 108 PITRINE------ITPIYKT--NLNIRSLRALIKKYVTLENLSILPEKI----------- 148

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260
             A+    +H P+  +        +E+     L   +I   L + + KK I   +++   
Sbjct: 149 --AKTLFFMHFPQTKEHI------QEKEILYALKWAEIFNYLNKLKNKKRILPSVSINAN 200

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
             +  + ++PF  TK Q   I DI  D+S  N+  R++ GDVGSGKT+V    M A    
Sbjct: 201 P-EPFISSLPFKLTKDQIKVINDIKNDISNTNQARRVVIGDVGSGKTIV----MLATAYM 255

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +++IM P  ILA Q YE   KY              +    ++          ++++I
Sbjct: 256 AEKSIIMCPTSILANQIYEEANKYLNGQWKTKNSEAFKITLVTQKSKFTEEDIQNSNLLI 315

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLV 436
           GTHAL   ++   ++ +V+VDEQHRFG  QR  L +  +     PH    +ATPIPRT  
Sbjct: 316 GTHALLYQNLP--QVNVVMVDEQHRFGTNQRAMLEKLTSNGNRVPHYFQFSATPIPRTQA 373

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           L     +++S I E P  +K I T II       +I  ++  +++G +   + P +EE  
Sbjct: 374 LIMSSFVNVSLIKELPF-KKDIDTYIISKEDFKSLIAHIQNEIAKGNQIVVVYPLVEESD 432

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N++S+ E  +   ++F   + I HG+  +  KE V+  F+     +LI TTVIEVGI 
Sbjct: 433 NFNYQSIEEGKDFWLKYF-DGVYITHGKDKN--KEEVLVEFRE-KGNILITTTVIEVGIS 488

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + I+I  AE  GLA LHQLRGRVGR  +   C L  +   +     RL    NT D
Sbjct: 489 LPRLTTIVIVGAERLGLATLHQLRGRVGRYGQKGYCFLYTNDKNN----KRLEAFANTLD 544

Query: 617 GFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARK 661
           GF IAE DL+ RK G++L G  QSG   F          +LE  ++
Sbjct: 545 GFKIAELDLEFRKSGDLLDGKAQSGE-SFKYFDEVKDLHILEDVKR 589


>gi|313893282|ref|ZP_07826857.1| nucleic acid-binding domain protein [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442178|gb|EFR60595.1| nucleic acid-binding domain protein [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 352

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 100/359 (27%), Positives = 178/359 (49%), Gaps = 12/359 (3%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           L+T +G+G      L K+        T    LL Y P ++ DR    +I ++       +
Sbjct: 5   LTTIKGIGPGREKQLHKL------GITNITSLLTYFPRTYEDRRTIYRIGDLKSGMTGGV 58

Query: 73  TGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
            G +      + + R    ++++ DGTG + ++ F +     KN + +G+++   GK + 
Sbjct: 59  VGTVIAVQEKRPRPRLSILEVVIADGTGPLKIVLFNQG--YKKNFYKKGQRLYAYGKAEF 116

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
               + M  P              I  +Y+L  G+S  + +  +    +    LPE + K
Sbjct: 117 QYGSMQMNTPQIENLGDGGEPDRGIVPIYALAEGVSQFVVRSSVRNWFAANHELPEILPK 176

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
           ++ +   + S  +AF ++H P  ++ +E     R +LAY+EL   Q  L L+R + +   
Sbjct: 177 EVREAHHYMSRYDAFKMMHFPDSSERYEEA---RHQLAYEELFVMQAGLALLRNKEQCHR 233

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
           G  +   G++  + + N+PFS T  Q+ A++DI  DM  +  M R+LQGDVGSGKT+VA 
Sbjct: 234 GPKMGPNGELMARCIENLPFSLTGDQQRALEDIRIDMEDERPMQRLLQGDVGSGKTVVAT 293

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           +++  A+E G Q  +MAP  ILA QHYE I +   N  I +E++TG+  +  +  +++ 
Sbjct: 294 LSLLKAIENGYQGALMAPTEILAAQHYEGITEVCGNLGITIELLTGSTTKKKKNVSIKG 352


>gi|307106672|gb|EFN54917.1| hypothetical protein CHLNCDRAFT_134628 [Chlorella variabilis]
          Length = 786

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 192/660 (29%), Positives = 295/660 (44%), Gaps = 99/660 (15%)

Query: 33  CGNANETRFIDLLFYHPSSFI--DRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY 90
             +        LL  +PS  +  +    P   E  E+ +VT+     +  +         
Sbjct: 178 LQSVGVGTLGQLLDCYPSRLLTSEPGRLP--EESDEDPVVTLAARCIKGPNAY------- 228

Query: 91  KILLNDGTGEITLLF-FYRKTEMLKNVFF-----EGRKITVTGKIKKLKNRIIMVHPHYI 144
                DG   +  +F F R +              G  + ++   + +    ++      
Sbjct: 229 -----DGRECLLEVFEFRRGSPWALKKRQQELGSVGDVVVLSDTWRLVGGWNVLKLDDSH 283

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP------VLPEWIEKDLLQKKS 198
               Q  +   +E ++ +   +       ++ +AL           L + +   + ++  
Sbjct: 284 QEFCQPQSSMRLEVMHPIKGDIMSKTMAALVEKALKFAEDADAKGELQDPLPSWMREQYQ 343

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI--PIN 256
              +  A   +H P+ A   E     R+RLA+ ELLA Q+ LLLMR       G      
Sbjct: 344 LQPLLPALRSVHQPKNAVLLEE---GRQRLAFQELLALQLKLLLMRSMAWAGTGGGGVEV 400

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            + K+ Q  L  +PF  T  Q+ A+ +IL  M     M  +LQG+VG GKT+VA +A+ A
Sbjct: 401 SDSKLLQLALEALPFEMTNGQQVALDNILGQMEGWPPMQCLLQGEVGCGKTIVACLALLA 460

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV---EIITGNMPQAHRRKALERIAH 373
           AV +G Q  IMAP  ILA+QHY  ++   Q+         I+TG++    R +  E +A 
Sbjct: 461 AVGSGYQGAIMAPTEILAEQHYRNLQALVQDINRKAGKDGIVTGSVRGKPRAQVDEGLAS 520

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA-PHVLLMTATPIP 432
           G   I +GTHAL  DS  + +L L IVDEQH+FGV+QR +L  KA+  PHVL MTATPIP
Sbjct: 521 GNIDIAVGTHALISDSTHFQRLGLAIVDEQHKFGVEQRGRLLAKASPVPHVLHMTATPIP 580

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RT  L   G++    I + PAGR P+ T ++  +                       P+ 
Sbjct: 581 RTQALIDHGNMTQVLIQQLPAGRTPVLTRMLQDDS----------------------PER 618

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           ++ +     S ++R             ++HG+M    K++V+  FK G  K+L++TTV+E
Sbjct: 619 QQAEVKAAASELDRLVEEGVFAHQDCGLLHGQMPPDQKDAVLQQFKQGAIKVLVSTTVVE 678

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           VG+DV  A++++IE+AE FG AQLHQLRGRV                           L 
Sbjct: 679 VGVDVPQATVMVIEHAERFGFAQLHQLRGRV---------------------------LV 711

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
           N  +GF +AE DL+ R  GE+             AQ      LLE AR+ A  +L + PD
Sbjct: 712 NCNNGFAVAECDLELRGAGEV-------------AQIPADRELLEQARQAAIDLLQRQPD 758


>gi|253827604|ref|ZP_04870489.1| Transcription-repair-coupling factor [Helicobacter canadensis MIT
           98-5491]
 gi|253511010|gb|EES89669.1| Transcription-repair-coupling factor [Helicobacter canadensis MIT
           98-5491]
          Length = 967

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 138/429 (32%), Positives = 217/429 (50%), Gaps = 23/429 (5%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           I  L  +++     GI I+   +          F  TK Q  AI++I +D+S    M R+
Sbjct: 426 IIALAAKREL--IDGIIIDTNKEEILVFQGQSGFVYTKDQNQAIQEIFKDLSSGRVMDRL 483

Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           L GDVG GKT VA+ AM A   +G QA I+ P  +LA QH+  IK   +   I V  +  
Sbjct: 484 LSGDVGFGKTEVAMNAMLACFLSGYQAAIITPTTLLAYQHFLTIKARFEAFGIKVARLDR 543

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +    ++  LE +  G   +++GTHAL      + KL L++VDE+H+FGV+Q+ K+ + 
Sbjct: 544 YVSAKEKKSILEGLKQGSVDVVVGTHALLNA--VFKKLALIVVDEEHKFGVKQKEKIKEI 601

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERL 475
           +   H+L M+ATPIPRTL +       +S++ E P+ R P +T +   +     EV+   
Sbjct: 602 SQNIHLLSMSATPIPRTLNMALSHIKGLSELKEAPSQRLPTRTFVKTYSDSLFKEVV--- 658

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              L  G + ++I   I    +            L       IAI+H ++S  + E ++ 
Sbjct: 659 LRELRRGGQVFYIHNNISSINQRKE-------EILSIMPHLKIAILHSQISAQESEDIIM 711

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F  G   LL+ T+++E GI + +A+ I+++ ++ FG+A LHQLRGRVGRG +   C  L
Sbjct: 712 EFAKGGFNLLLCTSIVESGIHLPNANTILVDRSDCFGIADLHQLRGRVGRGSKEGFCYFL 771

Query: 596 YHPP--LSKNSYTRLSVLKNT---EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
              P  +++ +  RL  L+       G  +A  DL+ R  G +LG  QSG  K +     
Sbjct: 772 IEDPNKITQEAQKRLMALEKNAYLGSGGALAYHDLEIRGGGNLLGEAQSGHIKNIGYSLY 831

Query: 651 LHDSLLEIA 659
           L   +LE A
Sbjct: 832 L--KMLEEA 838


>gi|108563915|ref|YP_628231.1| transcription-repair coupling factor [Helicobacter pylori HPAG1]
 gi|107837688|gb|ABF85557.1| transcription-repair coupling factor [Helicobacter pylori HPAG1]
          Length = 999

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 134/412 (32%), Positives = 214/412 (51%), Gaps = 21/412 (5%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++      +    +  F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A
Sbjct: 466 KMDTHLAELEVFKSHAGFEYTSDQEKAISEISKDLSSHRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A   G Q+ ++ P  +LA QH+E ++   +N  + V  +   +    + K L+ +  
Sbjct: 526 IFCAFLNGFQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRYVS--EKNKLLKAVEL 583

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G   +++GTHA+     ++  L LV+VDE+H+F V+Q+  L + + + H L M+ATPIPR
Sbjct: 584 GLMDVLVGTHAIL--GTKFKNLGLVVVDEEHKFSVKQKEALKELSKSVHFLSMSATPIPR 641

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 642 TLNMALSQIKGISSLKTPPTDRKPSRTFLKEKN--DELLKEIIYRELRRNGQIFYIHNHI 699

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +        L       IAI+H +++  + E +M  F  G  ++L+ T+++E
Sbjct: 700 ASISKVKTK-----LEELIPKL--KIAILHSQINASESEEIMLEFAKGNYQVLLCTSIVE 752

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ III+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 753 SGIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLA 812

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  IA  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 813 LEKNSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|224438472|ref|ZP_03659396.1| transcription-repair coupling factor [Helicobacter cinaedi CCUG
           18818]
 gi|313144905|ref|ZP_07807098.1| transcription-repair coupling factor [Helicobacter cinaedi CCUG
           18818]
 gi|313129936|gb|EFR47553.1| transcription-repair coupling factor [Helicobacter cinaedi CCUG
           18818]
          Length = 1005

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 142/483 (29%), Positives = 233/483 (48%), Gaps = 35/483 (7%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             + R    E+  G I L   R   +    + I+ +            F+ TK QE +IK
Sbjct: 441 KQKVRTKLLEIANGIIELAAKRNLLQG---VKIDTDNPKLLHFQSTCGFTLTKDQERSIK 497

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I  D+S    M R+L GDVG GKT VA+ A+ A + +G QA+++ P  +L+ QH+  ++
Sbjct: 498 EIYADLSSGKVMDRLLSGDVGFGKTEVAINAIYATILSGFQAMMIVPTTLLSAQHFHSLQ 557

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
                  I +      +    ++K  E +  G+  +++GTHAL     ++  L L++VDE
Sbjct: 558 MRLAPHNIRIARCDRFLKANEKKKLFESLEKGEIQVVVGTHALL--GARFKNLGLIVVDE 615

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           +H+FGV+Q+ K+ +     H+L M+ATPIPRTL +       +S +   P  R P++T I
Sbjct: 616 EHKFGVKQKEKIKELCANTHLLSMSATPIPRTLNMALSQIKSLSSLQTPPMARIPVRTFI 675

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAII 521
              N    + E +   +  G + ++I   I   +        +R   L +      IAI+
Sbjct: 676 KTSNN-ALLKEIILREIRRGGQVFYIHNNIASIE--------KRAKELQQILPQIKIAIL 726

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           H ++ +   E +M  F N    +L+ T+++E GI + +A+ III  A+ FG+A LHQLRG
Sbjct: 727 HSQVENAKSEQIMLDFANNAYNVLLCTSIVESGIHLPNANTIIIARADRFGIADLHQLRG 786

Query: 582 RVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGI 636
           RVGRG++   C  L      ++  +  RLS L+       G  +A  DL+ R  G +LG 
Sbjct: 787 RVGRGDKQGFCYFLLEDMEQITPEAKKRLSALEKNSYLGSGENLAYYDLEIRGGGNLLGE 846

Query: 637 KQSGMPKFLIAQPELHDSLLEI-------------ARKDAKHILTQDPDLTSVRGQSIRI 683
            QSG  K +     L   +LE              A+ D K  L    + + +   ++R+
Sbjct: 847 AQSGHIKNIGYGLYL--RMLEECINYLSGKGNITQAQCDLKLSLNAYLNPSLIASDTLRL 904

Query: 684 LLY 686
            LY
Sbjct: 905 ELY 907


>gi|317181253|dbj|BAJ59039.1| transcription-repair coupling factor [Helicobacter pylori F32]
          Length = 999

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 137/412 (33%), Positives = 216/412 (52%), Gaps = 21/412 (5%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++      +    +  F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A
Sbjct: 466 KMDTHLAELEIFKSHAGFEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A   G Q+ ++ P  +LA QH+E ++   +N  + V  +      + + K L+ +  
Sbjct: 526 IFCAFLNGFQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVEL 583

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G   +++GTHA+F    ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 584 GLIDVLVGTHAIF--CAKFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 641

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 642 TLNMALSQIKGISSLKIPPTDRKPSRTFLKEKN--DELLKEIIHRELRRNGQIFYIHNHI 699

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +        L       IAI+H +++  + E +M  F  G   +L+ T+++E
Sbjct: 700 ASISKVKTK-----LEELIPKL--KIAILHSQINANESEEIMLEFAKGNYHVLLCTSIVE 752

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ III+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 753 SGIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLA 812

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  IA  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 813 LEKNSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|168487226|ref|ZP_02711734.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC1087-00]
 gi|183569911|gb|EDT90439.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC1087-00]
          Length = 953

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 130/406 (32%), Positives = 213/406 (52%), Gaps = 14/406 (3%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    ++     E +A  +  L    +  +  G   + +           P+  
Sbjct: 556 KLNDGHFKKAKQKVKNQVEDIADDLIKLY--SERSQLKGFAFSADDDDQDAFDDAFPYVE 613

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q VI+ P  +L
Sbjct: 614 TDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVL 673

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  QN  + V++++    +  +   LE++ +GQ  I+IGTH +    + + 
Sbjct: 674 AQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFA 733

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L+I+DE+ RFGV+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P 
Sbjct: 734 DLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPT 793

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            R P++T ++  N    + + +   +  G + Y++  +++          V++ + L E 
Sbjct: 794 NRYPVQTYVLEKND-SVIRDAVLREMERGGQGYYLYNKVDTI--------VQKVSELQEL 844

Query: 514 FT-SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
              +SI  +HGRMS++  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H G
Sbjct: 845 IPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG 904

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED 616
           L+ L+QLRGRVGR   I+   L+Y P   +S+ S  RL  +K   +
Sbjct: 905 LSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTE 950


>gi|297380724|gb|ADI35611.1| transcription-repair coupling factor [Helicobacter pylori v225d]
          Length = 999

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 135/412 (32%), Positives = 216/412 (52%), Gaps = 21/412 (5%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++      +    +  F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A
Sbjct: 466 KMDTHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A   G Q+ ++ P  +LA QH+E ++   +N  + V  +      + + K L+ +  
Sbjct: 526 IFCAFLNGFQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVGL 583

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G   +++GTHA+     ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 584 GLIDVLVGTHAIL--GAKFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 641

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 642 TLNMALSQIKGISSLKIPPTDRKPSRTFLKEKN--DELLKEIIHRELRRNGQIFYIHNHI 699

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +        L       IAI+H +++  + E +M  F  G  ++L+ T+++E
Sbjct: 700 ASISKVKTK-----LEELIPKL--KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVE 752

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ I+I+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 753 SGIHLPNANTIVIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLA 812

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  IA  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 813 LEKNSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|149193785|ref|ZP_01870883.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
           TB-2]
 gi|149135738|gb|EDM24216.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
           TB-2]
          Length = 588

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 177/643 (27%), Positives = 282/643 (43%), Gaps = 74/643 (11%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
             L+K+        T  I+L    P  + D +       + + +  T    I        
Sbjct: 6   EKLNKL------GITNTIELALIKPKEWED-NNLYPF--LIDGKPQTFDAEILDIQ---- 52

Query: 85  QKRRPYKILLNDGTGEITLLF--FYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142
           +  +  +I         T+++  F++  +  ++VF++G+ + + G+++  +         
Sbjct: 53  KSTKIIRIKFY-LKNIKTIMWGVFFQWKKWHESVFYKGKNLYIRGEVRNNQ--------- 102

Query: 143 YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSI 202
            I           I  +Y +   ++   FK ++ + L+      E +   L +      I
Sbjct: 103 -IIQPKPISKIGEITPIYKV--AINQKSFKLLLKKYLTI-----ENL-STLRE-----DI 148

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
           A+    +H PR  +D          L + E+      L       KK+   P N      
Sbjct: 149 AKILYFMHFPRNLEDINEKKIT-YALKWAEIFNYLNKL------QKKKKNYPANPINADP 201

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
              + ++PF  T  Q   I +I  D+S+  +  R++ GDVGSGKT+V    M A      
Sbjct: 202 TPFINSLPFKLTNDQLKVINEIKNDLSKPLQARRVIIGDVGSGKTIV----MLATAFMSK 257

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           ++ IM P  ILA Q YE  KK+ +     + ++T     +             ++++IGT
Sbjct: 258 KSAIMCPTSILANQIYEEAKKFLEKFNFKITLVTQKSKFSE-------YDIQNSNLLIGT 310

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKL----TQKATAPHVLLMTATPIPRTLVLT 438
           HAL   ++    L  ++VDEQHRFG  QR KL    T K T PH    +ATPIPRT  L 
Sbjct: 311 HALLYQNLP--TLNTIMVDEQHRFGTNQRAKLEKLTTDKKTLPHYFQFSATPIPRTQALI 368

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               +++S I E P  +K I+T II      E+I  +   +  G +   + P +EE K  
Sbjct: 369 MSSFVNVSLIKELPF-KKDIETKIISKEDFKELINHINRQIHLGNQVIIVYPLVEESKNF 427

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           +++S+ E      +HF     +      D +KE ++  F+    K+LI TTVIEVGI + 
Sbjct: 428 DYQSIEEAKEWWLKHFD---GVYVTHGKDKNKEDILLEFRE-KGKILITTTVIEVGISLP 483

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + I+I  AE  GLA LHQLRGRVGR  +   C L  +   +K       +L    DGF
Sbjct: 484 KLTTIVIVGAERLGLATLHQLRGRVGRYGQKGYCYLYTNNKNNKRLIEFSKIL----DGF 539

Query: 619 LIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIAR 660
            IAE DLK RK G++L G  QSG   F         ++LE  +
Sbjct: 540 KIAELDLKFRKSGDLLDGKIQSGE-SFKYFDEVKDLNILEEVK 581


>gi|210135730|ref|YP_002302169.1| transcription-repair coupling factor [Helicobacter pylori P12]
 gi|210133698|gb|ACJ08689.1| transcription-repair coupling factor [Helicobacter pylori P12]
          Length = 999

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 136/412 (33%), Positives = 216/412 (52%), Gaps = 21/412 (5%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++      +    +  F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A
Sbjct: 466 KMDTHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A   G Q+ ++ P  +LA QH+E ++   +N  + V  +      + + K L+ +  
Sbjct: 526 IFCAFLNGFQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVEL 583

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G   +++GTHA+     ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 584 GLIDVLVGTHAIL--GAKFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 641

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 642 TLNMALSQIKGISSLKTPPTDRKPSRTFLKEKN--DELLKEIIHRELRRNGQIFYIHNHI 699

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +        L       IAI+H +++  + E +M  F  G  ++L+ T+++E
Sbjct: 700 ASISKVKTK-----LEGLIPKL--KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVE 752

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ III+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 753 SGIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLA 812

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  IA  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 813 LEKNSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|254994680|ref|ZP_05276870.1| transcription repair coupling factor (mfd) [Anaplasma marginale
           str. Mississippi]
          Length = 1099

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 127/454 (27%), Positives = 220/454 (48%), Gaps = 24/454 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           E ++  ++R+   ++    +    MR   +    +      +      +  P+  T+ Q 
Sbjct: 511 ERSAKLKKRIK--DIAQTLLHSEAMRVLAEGNKFLA----NQRYLDFCKEFPYVETEDQL 564

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQ 336
            AI ++ +D++    M R++ GDVG GKT VAL A    +      Q  ++ P  +L +Q
Sbjct: 565 KAISEVEEDLASGKVMDRLICGDVGFGKTEVALRAAFLVINEDPAKQVAVIVPTTLLCRQ 624

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H    ++  QN  I V+ +  +     + K  + + +G  +IIIGT AL  + I++  L 
Sbjct: 625 HLAAFRERFQNYDINVQQLARS-SATQKSKVKKALENGDINIIIGTSALLAEDIRFLDLS 683

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+I+DE+  FGVQQ+ +L +     HVL ++ATPIPRTL ++  G  ++S +   P GR 
Sbjct: 684 LLIIDEEQHFGVQQKEQLKKLRNDVHVLSLSATPIPRTLHMSLSGIKNLSVLRTPPMGRM 743

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            +   II  +  + +   +   +S G + ++ CP I +        V+     L  +   
Sbjct: 744 AVDIAIIQYDG-NIIKTAILDEVSRGGRVFFTCPFISDID-----GVLADLQKLVPNV-- 795

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            + + HGR S    + +M+ F +G   +L+ T++IE GID+  A+ II+ NA+ FGLAQL
Sbjct: 796 KVEVAHGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGLAQL 855

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           +QL+GRVGR         +             RL  +++      GF +A +D+  R  G
Sbjct: 856 YQLKGRVGRSTLKGYAYFIVSKKALPDSPGMKRLEAVRSLNSVGSGFALALQDMDMRGFG 915

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            ++G +QSG         EL+  +LE A    + 
Sbjct: 916 NLVGEEQSG--NIKEVGIELYHKMLEEAIAACQE 947


>gi|254780073|ref|YP_003058180.1| Transcription-repair coupling factor [Helicobacter pylori B38]
 gi|254001986|emb|CAX30245.1| Transcription-repair coupling factor [Helicobacter pylori B38]
          Length = 995

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 142/454 (31%), Positives = 230/454 (50%), Gaps = 21/454 (4%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P K +  + +    +     +LL     ++ +  +    +G  ++V     +    +  F
Sbjct: 424 PVKDRLGKGSFLKLKAKVRAKLLEIASKIIELAAERNLILGKKMDVHLAELEVFKSHAGF 483

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  QE AI +I +D+S    M R+L GDVG GKT VA+ A+  A   G Q+ ++ P  
Sbjct: 484 EYTSDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPTT 543

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LA QH+E ++   +   + V  +   +    + K L+ +  GQ   +IGTHA+     +
Sbjct: 544 LLAHQHFETLRARFEKFGVKVARLDRYVS--EKNKLLKAVELGQVDALIGTHAIL--GTK 599

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +   
Sbjct: 600 FKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTP 659

Query: 452 PAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           P  RKP +T +   N  DE++ E +   L    + ++I   I    +   +       +L
Sbjct: 660 PTDRKPSRTFLKEKN--DELLKEIIYRELRRNGQIFYIHNHIASISKVKTK-----LENL 712

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  IAI+H +++    E +M  F  G  ++L+ T+++E GI + +A+ III+NA++
Sbjct: 713 IPKL--KIAILHSQINANKSEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQN 770

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDL 625
           FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA  DL
Sbjct: 771 FGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDL 830

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           + R  G +LG  QSG  K +     L+  +LE A
Sbjct: 831 EIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|269959135|ref|YP_003328924.1| transcription repair coupling factor [Anaplasma centrale str.
           Israel]
 gi|269848966|gb|ACZ49610.1| transcription repair coupling factor [Anaplasma centrale str.
           Israel]
          Length = 1122

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 127/448 (28%), Positives = 219/448 (48%), Gaps = 24/448 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           E ++  ++R+   ++    +    MR   +    +      +      +  P+  T+ Q 
Sbjct: 534 ERSAKLKKRIK--DIAQTLLHSEAMRVLAEGNKFLA----NQRYLDFCKEFPYVETEDQL 587

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQ 336
            AI ++ +D++    M R++ GDVG GKT VAL A    +      Q  ++ P  +L +Q
Sbjct: 588 KAISEVEEDLASGKVMDRLICGDVGFGKTEVALRAAFLVINEDPAKQVAVIVPTTLLCRQ 647

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H    ++  QN  I V+ +  +     + K  + + +G  +IIIGT AL  + I++  L 
Sbjct: 648 HLAAFRERFQNYDINVQQLARS-SATQKSKVKKALENGDINIIIGTSALLAEDIRFLDLS 706

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+I+DE+  FGVQQ+ +L +     HVL ++ATPIPRTL ++  G  ++S +   P GR 
Sbjct: 707 LLIIDEEQHFGVQQKEQLKKLRNDVHVLSLSATPIPRTLHMSLSGIKNLSVLRTPPMGRM 766

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            +   II  +  + +   +   +S G + ++ CP I +        V+     L  +   
Sbjct: 767 AVDIAIIQYDG-NIIKTAILDEVSRGGRVFFTCPFISDID-----GVLADLQKLVPNV-- 818

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            + + HGR S    + +M+ F +G   +L+ T++IE GID+  A+ II+ NA+ FGLAQL
Sbjct: 819 KVEVAHGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGLAQL 878

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           +QL+GRVGR         +             RL  +++      GF +A +D+  R  G
Sbjct: 879 YQLKGRVGRSTLKGYAYFIVSKKALPDSPGMKRLEAVRSLNSVGSGFALALQDMDMRGFG 938

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++G +QSG         EL+  +LE A
Sbjct: 939 NLVGEEQSG--NIKEVGIELYHKMLEEA 964


>gi|308062834|gb|ADO04722.1| transcription-repair coupling factor [Helicobacter pylori Cuz20]
          Length = 999

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 141/454 (31%), Positives = 230/454 (50%), Gaps = 21/454 (4%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P K +  + +    +     +LL     ++ +  +    +G  ++      +    +  F
Sbjct: 424 PIKDQLGKGSFLKLKAKVKTKLLEIASKIIELAAERDLILGKKMDTHLAELEVFKSHAGF 483

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P  
Sbjct: 484 EYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPTT 543

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LA QH+E ++   +N  + V  +      + + K L+ +  G   +++GTHA+     +
Sbjct: 544 LLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVELGLIDVLVGTHAIL--GAK 599

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +   
Sbjct: 600 FKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKIP 659

Query: 452 PAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           P  RKP +T +   N  DE++ E +   L    + ++I   I    +   +        L
Sbjct: 660 PTDRKPSRTFLKEKN--DELLKEIIHRELRRNGQIFYIHNHIASISKVKTK-----LEEL 712

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  IAI+H +++  + E  M  F  G  ++L+ T+++E GI + +A+ III+NA++
Sbjct: 713 IPKL--KIAILHSQINANESEETMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQN 770

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDL 625
           FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA  DL
Sbjct: 771 FGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDL 830

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           + R  G +LG  QSG  K +     L+  +LE A
Sbjct: 831 EIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|332674360|gb|AEE71177.1| transcription-repair coupling factor [Helicobacter pylori 83]
          Length = 999

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 142/454 (31%), Positives = 232/454 (51%), Gaps = 21/454 (4%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P K +  + +    +     +LL     ++ +  +    +G  ++      +    +  F
Sbjct: 424 PTKDRLGKGSFLKLKAKVKTKLLEIAGKIIELAAERNLILGKKMDTHLAELEIFKSHAGF 483

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P  
Sbjct: 484 EYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPTT 543

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LA QH+E ++   +N  + V  +      + + K L+ +  G   +++GTHA+F    +
Sbjct: 544 LLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVELGLIDVLVGTHAIF--CAK 599

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +   
Sbjct: 600 FKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKIP 659

Query: 452 PAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           P  RKP +T +   N  DE++ E +   L    + ++I   I    +   +        L
Sbjct: 660 PTDRKPSRTFLKEKN--DELLKEIIHRELRRNGQIFYIHNHIASISKVKTK-----LEEL 712

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+NA++
Sbjct: 713 IPKL--KIAILHSQINAHESEGIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQN 770

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDL 625
           FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA  DL
Sbjct: 771 FGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDL 830

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           + R  G +LG  QSG  K +     L+  +LE A
Sbjct: 831 EIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|255002792|ref|ZP_05277756.1| transcription repair coupling factor (mfd) [Anaplasma marginale str.
            Puerto Rico]
          Length = 1152

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 127/454 (27%), Positives = 220/454 (48%), Gaps = 24/454 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            E ++  ++R+   ++    +    MR   +    +      +      +  P+  T+ Q 
Sbjct: 564  ERSAKLKKRIK--DIAQTLLHSEAMRVLAEGNKFLA----NQRYLDFCKEFPYVETEDQL 617

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQ 336
             AI ++ +D++    M R++ GDVG GKT VAL A    +      Q  ++ P  +L +Q
Sbjct: 618  KAISEVEEDLASGKVMDRLICGDVGFGKTEVALRAAFLVINEDPAKQVAVIVPTTLLCRQ 677

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            H    ++  QN  I V+ +  +     + K  + + +G  +IIIGT AL  + I++  L 
Sbjct: 678  HLAAFRERFQNYDINVQQLARS-SATQKSKVKKALENGDINIIIGTSALLAEDIRFLDLS 736

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+I+DE+  FGVQQ+ +L +     HVL ++ATPIPRTL ++  G  ++S +   P GR 
Sbjct: 737  LLIIDEEQHFGVQQKEQLKKLRNDVHVLSLSATPIPRTLHMSLSGIKNLSVLRTPPMGRM 796

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             +   II  +  + +   +   +S G + ++ CP I +        V+     L  +   
Sbjct: 797  AVDIAIIQYDG-NIIKTAILDEVSRGGRVFFTCPFISDID-----GVLADLQKLVPNV-- 848

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HGR S    + +M+ F +G   +L+ T++IE GID+  A+ II+ NA+ FGLAQL
Sbjct: 849  KVEVAHGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGLAQL 908

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
            +QL+GRVGR         +             RL  +++      GF +A +D+  R  G
Sbjct: 909  YQLKGRVGRSTLKGYAYFIVSKKALPDSPGMKRLEAVRSLNSVGSGFALALQDMDMRGFG 968

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             ++G +QSG         EL+  +LE A    + 
Sbjct: 969  NLVGEEQSG--NIKEVGIELYHKMLEEAIAACQE 1000


>gi|261838840|gb|ACX98606.1| transcription-repair coupling factor [Helicobacter pylori 51]
          Length = 999

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 136/412 (33%), Positives = 217/412 (52%), Gaps = 21/412 (5%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++      +    +  F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A
Sbjct: 466 KMDTHLAELEIFKSHAGFEYTNDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A   G Q+ ++ P  +LA QH+E ++   +N  + V  +      + + K L+ +  
Sbjct: 526 IFCAFLNGFQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVEL 583

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G   +++GTHA+F    ++ KL LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 584 GLVDVLVGTHAIF--CAKFKKLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 641

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 642 TLNMALSQIKGISSLKIPPTDRKPSRTFLKEKN--DELLKEIIHRELRRNGQIFYIHNHI 699

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +        L       IAI+H +++  + E +M  F  G  ++L+ T+++E
Sbjct: 700 ASISKVKTK-----LEDLIPKL--KIAILHSQINAHESEEIMLEFAKGNYQVLLCTSIVE 752

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ I+I+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 753 SGIHLPNANTIVIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIENQKSLNEQALKRLLA 812

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  IA  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 813 LEKNSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|56416451|ref|YP_153525.1| transcription repair coupling factor [Anaplasma marginale str. St.
            Maries]
 gi|56387683|gb|AAV86270.1| transcription repair coupling factor [Anaplasma marginale str. St.
            Maries]
          Length = 1152

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 127/454 (27%), Positives = 220/454 (48%), Gaps = 24/454 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            E ++  ++R+   ++    +    MR   +    +      +      +  P+  T+ Q 
Sbjct: 564  ERSAKLKKRIK--DIAQTLLHSEAMRVLAEGNKFLA----NQRYLDFCKEFPYVETEDQL 617

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQ 336
             AI ++ +D++    M R++ GDVG GKT VAL A    +      Q  ++ P  +L +Q
Sbjct: 618  KAISEVEEDLASGKVMDRLICGDVGFGKTEVALRAAFLVINEDPAKQVAVIVPTTLLCRQ 677

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            H    ++  QN  I V+ +  +     + K  + + +G  +IIIGT AL  + I++  L 
Sbjct: 678  HLAAFRERFQNYDINVQQLARS-SATQKSKVKKALENGDINIIIGTSALLAEDIRFLDLS 736

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+I+DE+  FGVQQ+ +L +     HVL ++ATPIPRTL ++  G  ++S +   P GR 
Sbjct: 737  LLIIDEEQHFGVQQKEQLKKLRNDVHVLSLSATPIPRTLHMSLSGIKNLSVLRTPPMGRM 796

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             +   II  +  + +   +   +S G + ++ CP I +        V+     L  +   
Sbjct: 797  AVDIAIIQYDG-NIIKTAILDEVSRGGRVFFTCPFISDID-----GVLADLQKLVPNV-- 848

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HGR S    + +M+ F +G   +L+ T++IE GID+  A+ II+ NA+ FGLAQL
Sbjct: 849  KVEVAHGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGLAQL 908

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
            +QL+GRVGR         +             RL  +++      GF +A +D+  R  G
Sbjct: 909  YQLKGRVGRSTLKGYAYFIVSKKALPDSPGMKRLEAVRSLNSVGSGFALALQDMDMRGFG 968

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             ++G +QSG         EL+  +LE A    + 
Sbjct: 969  NLVGEEQSG--NIKEVGIELYHKMLEEAIAACQE 1000


>gi|222474820|ref|YP_002563235.1| transcription repair coupling factor (mfd) [Anaplasma marginale str.
            Florida]
 gi|222418956|gb|ACM48979.1| transcription repair coupling factor (mfd) [Anaplasma marginale str.
            Florida]
          Length = 1152

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 127/454 (27%), Positives = 220/454 (48%), Gaps = 24/454 (5%)

Query: 219  EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
            E ++  ++R+   ++    +    MR   +    +      +      +  P+  T+ Q 
Sbjct: 564  ERSAKLKKRIK--DIAQTLLHSEAMRVLAEGNKFLA----NQRYLDFCKEFPYVETEDQL 617

Query: 279  SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQ 336
             AI ++ +D++    M R++ GDVG GKT VAL A    +      Q  ++ P  +L +Q
Sbjct: 618  KAISEVEEDLASGKVMDRLICGDVGFGKTEVALRAAFLVINEDPAKQVAVIVPTTLLCRQ 677

Query: 337  HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
            H    ++  QN  I V+ +  +     + K  + + +G  +IIIGT AL  + I++  L 
Sbjct: 678  HLAAFRERFQNYDINVQQLARS-SATQKSKVKKALENGDINIIIGTSALLAEDIRFLDLS 736

Query: 397  LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            L+I+DE+  FGVQQ+ +L +     HVL ++ATPIPRTL ++  G  ++S +   P GR 
Sbjct: 737  LLIIDEEQHFGVQQKEQLKKLRNDVHVLSLSATPIPRTLHMSLSGIKNLSVLRTPPMGRM 796

Query: 457  PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
             +   II  +  + +   +   +S G + ++ CP I +        V+     L  +   
Sbjct: 797  AVDIAIIQYDG-NIIKTAILDEVSRGGRVFFTCPFISDID-----GVLADLQKLVPNV-- 848

Query: 517  SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             + + HGR S    + +M+ F +G   +L+ T++IE GID+  A+ II+ NA+ FGLAQL
Sbjct: 849  KVEVAHGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGLAQL 908

Query: 577  HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
            +QL+GRVGR         +             RL  +++      GF +A +D+  R  G
Sbjct: 909  YQLKGRVGRSTLKGYAYFIVSKKALPDSPGMKRLEAVRSLNSVGSGFALALQDMDMRGFG 968

Query: 632  EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             ++G +QSG         EL+  +LE A    + 
Sbjct: 969  NLVGEEQSG--NIKEVGIELYHKMLEEAIAACQE 1000


>gi|15646148|ref|NP_208332.1| transcription-repair coupling factor (trcF) [Helicobacter pylori
           26695]
 gi|3914010|sp|O26066|MFD_HELPY RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|2314723|gb|AAD08581.1| transcription-repair coupling factor (trcF) [Helicobacter pylori
           26695]
          Length = 999

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 137/412 (33%), Positives = 216/412 (52%), Gaps = 21/412 (5%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++V     +    +  F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A
Sbjct: 466 KMDVHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A   G Q+ ++ P  +LA QH+E ++   +N  + V  +      + + K L+ +  
Sbjct: 526 IFCAFLNGFQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVEL 583

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           GQ   +IGTHA+     ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 584 GQVDALIGTHAIL--GAKFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 641

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 642 TLNMALSQIKGISSLKTPPTDRKPSRTFLKEKN--DELLKEIIYRELRRNGQIFYIHNHI 699

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +        L       IAI+H +++  + E +M  F  G  ++L+ T+++E
Sbjct: 700 ASILKVKTK-----LEDLIPKL--KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVE 752

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ III+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 753 SGIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLA 812

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  +A  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 813 LEKNSYLGSGESVAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|319778049|ref|YP_004134479.1| dead/deah box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171768|gb|ADV15305.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 1129

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 148/456 (32%), Positives = 227/456 (49%), Gaps = 17/456 (3%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
            P R   A  E+      L+ + +    +    I        +     P++ T  Q +AI
Sbjct: 540 WPKRREAALREIDRLAKRLVGLAEMRSSQPAEIIKPSRADLARFAAKFPYTETPDQAAAI 599

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           + +L D+S    M R++ GDVG GKT VAL A AAA   G Q  ++AP  +LA+QHYE  
Sbjct: 600 RAVLDDLSSGRTMNRLVCGDVGFGKTEVALRACAAAALCGKQVAVIAPTTVLARQHYETF 659

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            +    T + V  ++  +  A  + A E +  GQ  I++GT AL   S+ +  L L+++D
Sbjct: 660 SRRFAGTGLQVAHLSRMVGAAKAKAAKEGLRSGQVTIVVGTQALASRSVTFANLGLLVID 719

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+HRFGV+ +L L   A   H L M+ATPIPRTL     G  D+S +   PA R+P++T+
Sbjct: 720 EEHRFGVKLKLALRNMAPCLHTLSMSATPIPRTLQSALSGIQDVSVLNSPPAKRRPVRTI 779

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           +   +    V   L      G +++++ P+IE+        V ++ N L       +   
Sbjct: 780 LAAFD-PASVRAALLREFHRGGQSFFVVPRIEDIG-----PVSDQLNRLVPEL--GVMTA 831

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG M     + VM  F +G   +L++T +IE G+DV  A+ II+   + FGLAQLHQLRG
Sbjct: 832 HGEMKGRQLDEVMVGFADGDGDILLSTDIIESGLDVPRANTIIVWRPDRFGLAQLHQLRG 891

Query: 582 RVGRGEEISSCILLYHP-----PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           RVGRG   ++  LL  P       ++   + +  L     G  I++ DL  R  G++ G 
Sbjct: 892 RVGRGAMQAAAFLLTEPGVELADGTRARLSTMLALDRLGSGLAISQRDLDLRGAGDLFGE 951

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            Q+G  K +     L++ LLE A   A      DP+
Sbjct: 952 DQAGHMKLIGVG--LYEHLLERAVSAAGE--GADPN 983


>gi|32265957|ref|NP_859989.1| transcription-repair coupling factor [Helicobacter hepaticus ATCC
           51449]
 gi|32262006|gb|AAP77055.1| transcription-repair coupling factor [Helicobacter hepaticus ATCC
           51449]
          Length = 1001

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 132/445 (29%), Positives = 217/445 (48%), Gaps = 21/445 (4%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           +    ++       +A  I  L  ++      GI I+ +            F+ T  Q  
Sbjct: 434 FAKLKQKVKTKLLEIAHNIIDLAAKRNL--LQGIKIDTQNPSLLSFQNACGFTLTHDQIR 491

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           +I++I  D+S    M R+L GDVG GKT VA+ A+ A   +G QA ++ P  +L  QHY 
Sbjct: 492 SIEEIYTDLSSGKVMDRLLSGDVGFGKTEVAMNAIYAVCLSGFQAAMIVPTTLLCAQHYH 551

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            ++   ++  I V      +  A +++    + + +  +++GTHAL     ++ KL L++
Sbjct: 552 SLQMRLESFGIRVARCDRFLSTAEKKRLFLGLKNNEVDVVVGTHALL--GAEFAKLGLIV 609

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+H+FGV+Q+ ++       H+L M+ATPIPRTL +       +S +   P  R P++
Sbjct: 610 VDEEHKFGVKQKERIKALCAHTHLLSMSATPIPRTLNMALSHIKSLSSLHTPPVDRIPVR 669

Query: 460 TVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           T I   N  D ++ E +   L  G + ++I   I        +   +   SL       I
Sbjct: 670 TFI--KNAKDSLLKEIILRELRRGGQVFYIHNNIATI-----QKKAQEIQSLLPQL--KI 720

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           AI+H ++     E++M  F N    +L+ T++IE GI + +A+ I++ +A+ FG+A LHQ
Sbjct: 721 AILHSKVESTQTENIMLDFANNVYNVLLCTSIIESGIHLPNANTIVVASADRFGIADLHQ 780

Query: 579 LRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEI 633
           LRGRVGRG +   C  L      ++  +  RL  L+       G  +A  DL+ R  G +
Sbjct: 781 LRGRVGRGNKEGFCYFLVEDMEVITPEAKKRLMALEKNSYLGSGENLAYYDLEIRGGGNL 840

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEI 658
           LG  QSG  K +     L   LLE 
Sbjct: 841 LGEAQSGHIKNIGYGLYL--RLLEE 863


>gi|261840243|gb|ACY00009.1| transcription-repair coupling factor [Helicobacter pylori 52]
          Length = 999

 Score =  296 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 140/454 (30%), Positives = 228/454 (50%), Gaps = 21/454 (4%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P K +  + +    +     +LL     ++ +  +    +G  ++      +    +  F
Sbjct: 424 PTKDRLGKGSFLKLKAKVKTKLLEIASKIIELAAERNLILGKKMDTHLAELEVFKSHAGF 483

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P  
Sbjct: 484 EYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPTT 543

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LA QH+E ++   +N  + V  +      + + K L+ +  G   +++GTHA+     +
Sbjct: 544 LLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVGLGLIDVLVGTHAIL--GAK 599

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +   
Sbjct: 600 FKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKIP 659

Query: 452 PAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           P  RKP +T +   N  DE++ E +   L    + ++I   I    +   +        L
Sbjct: 660 PTDRKPSRTFLKEKN--DELLKEIIHRELRRNGQIFYIHNHIASISKVKTK-----LEDL 712

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  IAI+H ++S  + E +M  F  G  ++L+ T+++E GI + +A+ III+NA++
Sbjct: 713 IPKL--KIAILHSQISAHESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQN 770

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK-----NTEDGFLIAEEDL 625
           FGLA LHQLRGRVGRG++   C  L     S N  +   +L          G  +A  DL
Sbjct: 771 FGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQSLKRLLALEKNSYLGSGESVAYHDL 830

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           + R  G +LG  QSG  K +     L+  +LE A
Sbjct: 831 EIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|255003926|ref|ZP_05278727.1| transcription repair coupling factor (mfd) [Anaplasma marginale
           str. Virginia]
          Length = 1148

 Score =  296 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 127/448 (28%), Positives = 219/448 (48%), Gaps = 24/448 (5%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           E ++  ++R+   ++    +    MR   +    +      +      +  P+  T+ Q 
Sbjct: 560 ERSAKLKKRIK--DIAQTLLHSEAMRVLAEGNKFLA----NQRYLDFCKEFPYVETEDQL 613

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQ 336
            AI ++ +D++    M R++ GDVG GKT VAL A    +      Q  ++ P  +L +Q
Sbjct: 614 KAISEVEEDLASGKVMDRLICGDVGFGKTEVALRAAFLVINEDPAKQVAVIVPTTLLCRQ 673

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H    ++  QN  I V+ +  +     + K  + + +G  +IIIGT AL  + I++  L 
Sbjct: 674 HLAAFRERFQNYDINVQQLARS-SATQKSKVKKALENGDINIIIGTSALLAEDIRFLDLS 732

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L+I+DE+  FGVQQ+ +L +     HVL ++ATPIPRTL ++  G  ++S +   P GR 
Sbjct: 733 LLIIDEEQHFGVQQKEQLKKLRNDVHVLSLSATPIPRTLHMSLSGIKNLSVLRTPPMGRM 792

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            +   II  +  + +   +   +S G + ++ CP I +        V+     L  +   
Sbjct: 793 AVDIAIIQYDG-NIIKTAILDEVSRGGRVFFTCPFISDID-----GVLADLQKLVPNV-- 844

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            + + HGR S    + +M+ F +G   +L+ T++IE GID+  A+ II+ NA+ FGLAQL
Sbjct: 845 KVEVAHGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGLAQL 904

Query: 577 HQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           +QL+GRVGR         +             RL  +++      GF +A +D+  R  G
Sbjct: 905 YQLKGRVGRSTLKGYAYFIVSKKALPDSPGMKRLEAVRSLNSVGSGFALALQDMDMRGFG 964

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++G +QSG         EL+  +LE A
Sbjct: 965 NLVGEEQSG--NIKEVGIELYHKMLEEA 990


>gi|317013364|gb|ADU83972.1| transcription-repair coupling factor (trcF) [Helicobacter pylori
           Lithuania75]
          Length = 999

 Score =  296 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 135/412 (32%), Positives = 217/412 (52%), Gaps = 21/412 (5%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++V     +    +  F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A
Sbjct: 466 KMDVHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A   G Q+ ++ P  +LA QH+E ++   +N  + V  +      + + K L+ +  
Sbjct: 526 IFCAFLNGFQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVGL 583

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G   +++GTHA+     ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 584 GLIDVLVGTHAIL--GAKFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 641

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 642 TLNMALSQIKGISSLKTPPTDRKPSRTFLKEKN--DELLKEIIYRELRRNGQIFYIHNHI 699

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +       +L       IAI+H +++  + E +M  F  G  ++L+ T+++E
Sbjct: 700 ASISKVKTK-----LENLIPKL--KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVE 752

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ III+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 753 SGIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLA 812

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  +A  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 813 LEKNSYLGSGESVAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|317179751|dbj|BAJ57539.1| transcription-repair coupling factor [Helicobacter pylori F30]
          Length = 999

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 142/454 (31%), Positives = 231/454 (50%), Gaps = 21/454 (4%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P K +  + +    +     +LL     ++ +  +    +G  ++      +    +  F
Sbjct: 424 PTKDRLGKGSFLKLKAKVKTKLLEIASKIIELAAERNLILGKKMDTHLAELEIFKSHAGF 483

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P  
Sbjct: 484 EYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSTLVVPTT 543

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LA QH+E ++   +N  + V  +      + + K L+ +  G   +++GTHA+F    +
Sbjct: 544 LLAHQHFETLRVRFENFGVKVARLDRY--ASEKNKLLKAVELGLIDVLVGTHAIF--CAK 599

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +   
Sbjct: 600 FKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKIP 659

Query: 452 PAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           P  RKP +T +   N  DE++ E +   L    + ++I   I    +   +        L
Sbjct: 660 PTDRKPSRTFLKEKN--DELLKEIIHRELHRNGQIFYIHNHIASISKVKTK-----LEDL 712

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  IAI+H +++  + E  M  F  G  ++L+ T+++E GI + +A+ III+NA++
Sbjct: 713 IPKL--KIAILHSQINANESEETMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQN 770

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDL 625
           FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA  DL
Sbjct: 771 FGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDL 830

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           + R  G +LG  QSG  K +     L+  +LE A
Sbjct: 831 EIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|317178272|dbj|BAJ56061.1| transcription-repair coupling factor [Helicobacter pylori F16]
          Length = 999

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 135/412 (32%), Positives = 216/412 (52%), Gaps = 21/412 (5%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++      +    +  F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A
Sbjct: 466 KMDTHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A   G Q+ ++ P  +LA QH+E ++   +N  + V  +      + + K L+ +  
Sbjct: 526 IFCAFLNGFQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVEL 583

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G   +++GTHA+     ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 584 GLIDVLVGTHAIL--GAKFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 641

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 642 TLNMALSQIKGISSLKIPPIDRKPSRTFLKEKN--DELLKEIIHRELRRNGQIFYIHNHI 699

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +        L       IAI+H +++  + E +M  F  G  ++L+ T+++E
Sbjct: 700 ASISKVKTK-----LEDLIPKL--KIAILHSQINAHESEEIMLEFDKGNYQVLLCTSIVE 752

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ I+I+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 753 SGIHLPNANTIVIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLA 812

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  IA  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 813 LEKNSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|242309312|ref|ZP_04808467.1| transcription-repair coupling factor [Helicobacter pullorum MIT
           98-5489]
 gi|239524353|gb|EEQ64219.1| transcription-repair coupling factor [Helicobacter pullorum MIT
           98-5489]
          Length = 1008

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 132/453 (29%), Positives = 224/453 (49%), Gaps = 17/453 (3%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P   K  + +    +    ++L      ++ +  + +   GI ++   +          F
Sbjct: 435 PILDKLGKGSFARLKEKVKEKLFVIANGIIALAAKRELIDGIVLDTNKEEILIFQNQSGF 494

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             TK Q  AI++I +D+S    M R+L GDVG GKT VA+ AM  +  +G Q+ I+ P  
Sbjct: 495 IYTKDQSKAIEEIFKDLSSGRVMDRLLSGDVGFGKTEVAMNAMFVSYLSGYQSAIITPTT 554

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LA QHY  IK   ++  I +  +   +    ++  LE +  G  H ++GTHAL    + 
Sbjct: 555 LLAYQHYLTIKSRFESFGIKIARLDRYIGTKEKKAILEGLKDGTIHAVVGTHALLN--VS 612

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L+++DE+H+FGV+Q+ ++ + A   H+L M+ATPIPRTL +       +S++ E 
Sbjct: 613 FKNLALIVIDEEHKFGVKQKERIKEIAQNTHLLSMSATPIPRTLNMALSHIKGLSELKEA 672

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P+ R P +T +   +    + E +   L  G + ++I   I    +            L 
Sbjct: 673 PSQRLPTRTFVKEYSD-SLLKEVILRELRRGGQVFYIHNNISTINQKKE-------EILT 724

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 IAI+H ++   + E+++  F  G   LL+ T+++E GI + +A+ I++  ++ F
Sbjct: 725 ILPHLKIAILHSQIQAQESENIIMEFAKGNFNLLLCTSIVESGIHLPNANTILVGRSDCF 784

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNT---EDGFLIAEEDLK 626
           G+A LHQLRGRVGRG +   C  L      +++ +  RL  L+       G  +A  DL+
Sbjct: 785 GIADLHQLRGRVGRGSKEGFCYFLIEDSSSITQEAQKRLLALEKNAYLGSGGALAYHDLE 844

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            R  G +LG  QSG  K +     L   +LE A
Sbjct: 845 IRGGGNLLGEAQSGHIKNIGYSLYL--RMLEEA 875


>gi|317011784|gb|ADU85531.1| transcription-repair coupling factor [Helicobacter pylori
           SouthAfrica7]
          Length = 999

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 140/454 (30%), Positives = 228/454 (50%), Gaps = 21/454 (4%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P K +  + +    +     +LL     ++ +  +    +G  +       +    +  F
Sbjct: 424 PTKDRLGKGSFLKLKAKVRTKLLEIASKIIELAAERNLILGKKMETHLAELEIFKTHAGF 483

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  QE AI +I +D+S    M R+L GDVG GKT VA+ A+  A   G Q+ ++ P  
Sbjct: 484 EYTSDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPTT 543

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LA QH+E ++   +N  + V  +   +    + K L+ +  G    ++GTHA+     +
Sbjct: 544 LLAHQHFETLRARFENFGVKVARLDRYVS--EKNKLLKAVESGLVDALVGTHAIL--GAK 599

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L L++VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +   
Sbjct: 600 FKNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTP 659

Query: 452 PAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           P  RKP +T +   N  DE++ E +   L    + ++I   I    +       +   +L
Sbjct: 660 PTDRKPSRTFLKEKN--DELLKEIIHRELRRNGQIFYIHNHIASISKVK-----KELENL 712

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  IAI+H +++  + E +M  F  G  ++L+ T+++E GI + +A+ III+NA++
Sbjct: 713 IPKL--KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQN 770

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDL 625
           FGLA LHQLRGRVGRG++   C  L      LS  +  RL  L+       G  IA  DL
Sbjct: 771 FGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLSDQALKRLLALEKNSYLGSGESIAYHDL 830

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           + R  G +LG  QSG  K +     L+  +LE A
Sbjct: 831 EIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|188528343|ref|YP_001911030.1| transcription-repair coupling factor [Helicobacter pylori Shi470]
 gi|188144583|gb|ACD49000.1| transcription-repair coupling factor [Helicobacter pylori Shi470]
          Length = 999

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 135/412 (32%), Positives = 215/412 (52%), Gaps = 21/412 (5%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++      +    +  F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A
Sbjct: 466 KMDTHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +      G Q+ ++ P  +LA QH+E ++   +N  + V  +      + + K L+ +  
Sbjct: 526 IFCMFLNGFQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVEL 583

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G   +++GTHA+     ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 584 GLIDVLVGTHAIL--GAKFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 641

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 642 TLNMALSQIKGISSLKIPPTDRKPSRTFLKEKN--DELLKEIIHRELRRNGQIFYIHNHI 699

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +        L       IAI+H +++  + E +M  F  G  ++L+ T+++E
Sbjct: 700 ASISKVKTK-----LEELIPKL--KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVE 752

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ III+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 753 SGIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLA 812

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  IA  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 813 LEKNSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|308803831|ref|XP_003079228.1| putative helicase (ISS) [Ostreococcus tauri]
 gi|116057683|emb|CAL53886.1| putative helicase (ISS) [Ostreococcus tauri]
          Length = 905

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 141/482 (29%), Positives = 230/482 (47%), Gaps = 33/482 (6%)

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE-----LLAGQIALLLMRKQFKKEI 251
           +       +   +  P K    + ++    R    E     L+  Q+ + L R Q  +  
Sbjct: 283 RRLLYRFCSPGALVKPPKLNKLKDSTTWDLREKKTEATIRRLVVNQMVIYLQRLQTIRNP 342

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                   +  +   ++ P+  T  Q  A++DI  D+S+   M R++ GDVG GKT VA+
Sbjct: 343 YE--LPPAESVEAFDKSFPYKLTPDQVRAVEDITIDLSRDAPMDRLVIGDVGFGKTEVAM 400

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            A+     +GG   +MAP  +LA+QH   +    +   I VE++T ++ ++   +  E+ 
Sbjct: 401 RAIFHVASSGGGVFMMAPTTVLAKQHAANLAARFRPLGINVELVTRHVVKSRHTEIFEKF 460

Query: 372 AHGQAHIIIGTHALFQ-DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
             G   II+GTH L   DS  Y KL L+++DE+ RFGV+ + +++       VL ++ATP
Sbjct: 461 KEGTVQIIVGTHKLVNLDSEYYRKLKLLVIDEEQRFGVKHKDQISALKAEVDVLTLSATP 520

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +   G  D S +   P  R+PI T++ P N  D +   ++  L+   + Y+I P
Sbjct: 521 IPRTLHMAMSGFRDASLVQTPPPERRPINTILAPQNDAD-ITRAIEHELNRNGQVYYIVP 579

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           ++     S  +   ER N L       I   HG+M     +  M++F +GT  +LIATT+
Sbjct: 580 RV-----SMMKEASERLNRLFPEL--RIMTCHGQMDGDQIDDAMEAFSSGTADVLIATTI 632

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH---PPLSKNSYTR 607
           +E G+D+ + + IIIEN           LRGRVGR    +   + Y      L+  +  R
Sbjct: 633 VESGLDIPNCNTIIIEN-----------LRGRVGRAGRQAYAYMFYSSDESELTPAAQER 681

Query: 608 LSVLKN---TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           L+ L+      +GF ++E D+  R  G + G KQSG    + A   L     ++ R D  
Sbjct: 682 LAALEECCGLGEGFRLSERDMGIRGVGTMFGEKQSGDVDNVGADLYLELLYKQLQRIDNL 741

Query: 665 HI 666
            I
Sbjct: 742 RI 743


>gi|207091918|ref|ZP_03239705.1| transcription-repair coupling factor (trcF) [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 911

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 135/412 (32%), Positives = 217/412 (52%), Gaps = 21/412 (5%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++V     +    +  F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A
Sbjct: 378 KMDVHLAELEVFKSHAGFEYTSDQEKAIAEISRDLSSKRVMDRLLSGDVGFGKTEVAMHA 437

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +      G Q+ ++ P  +LA QH+E ++   +N  + V  +      + + K L+ +  
Sbjct: 438 IFCTFLNGFQSALVVPTTLLAHQHFETLRVRFENFGVKVARLDRY--ASEKNKLLKAVEL 495

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G   +++GTHA+     ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 496 GLIDVLVGTHAIL--GAKFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 553

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 554 TLNMALSQIKGISSLKTPPTDRKPSRTFLKEKN--DELLKEIIHRELRRNGQIFYIHNHI 611

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +        L       IAI+H +++  + E +M  F  G+ ++L+ T+++E
Sbjct: 612 ASILKVKTK-----LEELIPKL--KIAILHSQINANESEEIMLEFAKGSYQVLLCTSIVE 664

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ III+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 665 SGIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLA 724

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  +A  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 725 LEKNSYLGSGESVAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTHMLEDA 774


>gi|237752073|ref|ZP_04582553.1| transcription-repair coupling factor [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229376640|gb|EEO26731.1| transcription-repair coupling factor [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 1011

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 129/450 (28%), Positives = 232/450 (51%), Gaps = 24/450 (5%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +V+ +          F  T+ Q  A+ +I +D+S    M R+L GDVG GKT VA+ AM
Sbjct: 480 FDVQKEEILLFQNKSGFHYTEDQTQAVNEIFKDLSSGKVMDRLLSGDVGFGKTEVAMNAM 539

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
             A  +G Q+ ++ P  +LA QH+  +K+        +  +   +    +++ L  + +G
Sbjct: 540 FVAFLSGFQSAMIVPTTLLAYQHFNTLKERFVPFGFKLARLDRYVSTKEKKQILRDLKNG 599

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + + ++GTHAL     ++  L L++VDE+H+FGV+Q+ K+   +   H+L M+ATPIPRT
Sbjct: 600 ELNAVVGTHALLSA--EFKNLALMVVDEEHKFGVKQKEKIKDLSQNIHLLSMSATPIPRT 657

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L +       +S++   P+ R+  +T +  ++    + E +   +  G + ++I   I  
Sbjct: 658 LNMALSHIKGLSELKTPPSERQATRTFVKQLDDT-LLKEIIMREMRRGGQMFYIHNSIAT 716

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            ++            L    T  IAI+H ++   + E ++  F  GT ++L+ T+++E G
Sbjct: 717 IRQKKE-------EILRVLPTLKIAILHSQIPAQEAEDIVLEFAKGTYQILLCTSIVESG 769

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK 612
           I + +A+ I+++NA +FG+A LHQLRGRVGRG +   C LL      +++++  RL  L+
Sbjct: 770 IHLPNANTILVDNANYFGIADLHQLRGRVGRGNKEGFCYLLIEDFESITEDAKKRLLALE 829

Query: 613 NTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLE----IARKD 662
                  G  +A  DL+ R  G +LG  QSG  K   + +    L D++      +A+K+
Sbjct: 830 KNSFLGSGGALAYHDLEIRGGGNLLGEAQSGHIKNIGYSLYLRMLEDAIFALSGNVAQKE 889

Query: 663 AKHILTQD--PDLTSVRGQSIRILLYLYQY 690
           A   +       L +   +S R+ L +Y+ 
Sbjct: 890 ANVEVKLSVTAFLNAELIESERLRLEIYRR 919


>gi|213422785|ref|ZP_03355828.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 342

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 153/341 (44%), Positives = 215/341 (63%), Gaps = 8/341 (2%)

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT--- 415
                R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L    
Sbjct: 4   RKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKG 63

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R
Sbjct: 64  QQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDR 123

Query: 475 LKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKES 532
           ++   + EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++
Sbjct: 124 VRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQA 183

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C
Sbjct: 184 VMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHC 243

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
           +LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A     
Sbjct: 244 VLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRD 303

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
            +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 304 QAMIPEVQRIARHIHERYP--QQAQALIERWMPETERYSNA 342


>gi|315585955|gb|ADU40336.1| transcription-repair coupling factor [Helicobacter pylori 35A]
          Length = 999

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 141/454 (31%), Positives = 230/454 (50%), Gaps = 21/454 (4%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P K +  + +    +     +LL     ++ +  +    +G  ++      +    +  F
Sbjct: 424 PTKDRLGKGSFLKLKAKVKTKLLEIAGKIIELAAERNLILGKKMDTHLAELEIFKSHAGF 483

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A+  A   G Q+ ++ P  
Sbjct: 484 EYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSTLVVPTT 543

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LA QH+E ++   +N  + V  +      + + K L+ +  G   +++GTHA+     +
Sbjct: 544 LLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVELGLIDVLVGTHAIL--GAK 599

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           +  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPRTL +       IS +   
Sbjct: 600 FKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKSISSLKIP 659

Query: 452 PAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
           P  RKP +T +   N  DE++ E +   L    + ++I   I    +   +        L
Sbjct: 660 PTDRKPSRTFLKEKN--DELLKEIIHRELRRNGQIFYIHNHIASISKVKTK-----LEDL 712

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                  IAI+H +++  + E  M  F  G  ++L+ T+++E GI + +A+ III+NA++
Sbjct: 713 IPKL--KIAILHSQINASESEETMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQN 770

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDL 625
           FGLA LHQLRGRVGRG++   C  L      L++ +  RL  L+       G  IA  DL
Sbjct: 771 FGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDL 830

Query: 626 KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           + R  G +LG  QSG  K +     L+  +LE A
Sbjct: 831 EIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|217031702|ref|ZP_03437206.1| hypothetical protein HPB128_155g15 [Helicobacter pylori B128]
 gi|298737160|ref|YP_003729690.1| transcription-repair coupling factor [Helicobacter pylori B8]
 gi|216946549|gb|EEC25149.1| hypothetical protein HPB128_155g15 [Helicobacter pylori B128]
 gi|298356354|emb|CBI67226.1| transcription-repair coupling factor (superfamily II helicase)
           [Helicobacter pylori B8]
          Length = 999

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 135/412 (32%), Positives = 215/412 (52%), Gaps = 21/412 (5%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++V     +       F  T  QE AI +I +D+S    M R+L GDVG GKT VA+ A
Sbjct: 466 KMDVHLAELEVFKSQAGFEYTSDQEKAIAEISKDLSSHRMMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A   G Q+ ++ P  +LA QH+E ++   +N  + V  +      + + K L+ +  
Sbjct: 526 IFCAFLNGFQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVEL 583

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G    ++GTHA+     ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 584 GLIDALVGTHAIL--GAKFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 641

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 642 TLNMALSQIKGISSLKTPPTDRKPSRTFLKEKN--DELLKEIIYRELRRNGQIFYIHNHI 699

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +       +L       IAI+H +++  + E +M  F  G  ++L+ T+++E
Sbjct: 700 ASISKVKTK-----LENLIPKL--KIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVE 752

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ III+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 753 SGIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLA 812

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  +A  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 813 LEKNSYLGSGESVAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|217033838|ref|ZP_03439263.1| hypothetical protein HP9810_877g42 [Helicobacter pylori 98-10]
 gi|216943736|gb|EEC23179.1| hypothetical protein HP9810_877g42 [Helicobacter pylori 98-10]
          Length = 999

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 135/412 (32%), Positives = 215/412 (52%), Gaps = 21/412 (5%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++      +    +  F  T  QE AI +I +D+S +  M R+L GDVG GKT VA+ A
Sbjct: 466 KMDTHLAELEIFKSHAGFEYTSDQEKAIAEISKDLSSQRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A   G Q+ ++ P  +LA QH+E ++   +N  + V  +      + + K L+ +  
Sbjct: 526 IFCAFLNGFQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVGL 583

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G   +++GTHA+     ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 584 GLIDVLVGTHAIL--GAKFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 641

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 642 TLNMALSQIKGISSLKIPPTDRKPSRTFLKEKN--DELLKEIIHRELRRNGQIFYIHNHI 699

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +            L       IAI+H +++  + E +M  F  G  ++L+ T+++E
Sbjct: 700 ASISKVKTN-----LEDLIPKL--KIAILHSQINAHESEEIMLEFAKGNYQVLLCTSIVE 752

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ III+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 753 SGIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLA 812

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           L+       G  IA  DL+ R  G +LG  QSG  K +     L+  +LE A
Sbjct: 813 LEKNSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLEDA 862


>gi|126464290|ref|YP_001045403.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126106101|gb|ABN78631.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 1059

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 145/480 (30%), Positives = 229/480 (47%), Gaps = 20/480 (4%)

Query: 195 QKKSFPSIAEAFNIIHNPR----KAKDFEWTSPARERLAYDE-LLAGQIALLLMRKQFKK 249
            +     + EA  I                 +    R   DE +     AL+   K+   
Sbjct: 448 DQHLLVPVEEAGRIWRYGTGADVSLDRLNGAAWTNRRKKLDEGIAEAARALVAAAKERAA 507

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           +          I ++     PF+ +  Q  AI ++  D+     M R++ GDVG GKT +
Sbjct: 508 KSARAFEPPSDIYERFAGRFPFTLSPDQRRAIAEVRDDLVAGRPMNRLVLGDVGFGKTEI 567

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           AL A AA   +G Q  ++AP  +LA+QH E  ++  +   + V  ++  +P    + A +
Sbjct: 568 ALRAAAAVALSGAQVALVAPSTVLARQHAETFRRRFEGFGVTVAHLSRLVPSKEAKAARD 627

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +  G   I++GTHAL    + +  L L+IVDE+ RFG   + +L       HVL MTAT
Sbjct: 628 GLRDGSIRIVVGTHALLGKGVAFADLGLLIVDEEQRFGAAHKARLRALGADLHVLTMTAT 687

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL    +G  D+S+I   PA R+ ++T+    +    + + L      G +++ I 
Sbjct: 688 PIPRTLQTALVGLQDLSEIATPPARRRAVRTLTAEED-AAVLRQALLRERRRGGQSFVIV 746

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           P+I E   +       R   L       +A  HG ++  + +  M  F  G   +L+AT+
Sbjct: 747 PRIAEIDATE-----ARLRDLLPEAQLRVA--HGDLAPEELDRAMVDFAAGRGDILLATS 799

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTR 607
           ++E G+DV  A+ +I+   + FGLAQLHQLRGRVGRG   + C L++ P   L + +  R
Sbjct: 800 IVEAGLDVPRANTMIVMQPQLFGLAQLHQLRGRVGRGARQAYCYLMHGPGDDLDEAALRR 859

Query: 608 LSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           L  L+  +    G  IA EDL QR  GE+ G +QSG  + +     L+  LL  A + A+
Sbjct: 860 LGTLQAFDRLGAGAAIAAEDLDQRGAGELFGERQSGHVRLI--GLPLYQHLLAQAVRAAR 917


>gi|257452998|ref|ZP_05618297.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_5R]
 gi|317059538|ref|ZP_07924023.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_5R]
 gi|313685214|gb|EFS22049.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_5R]
          Length = 983

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 140/441 (31%), Positives = 236/441 (53%), Gaps = 16/441 (3%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
           S  RE+L  +++L     +L ++ + K   G   + +    ++   + P++ T +Q+ AI
Sbjct: 409 SKKREKL-QEDILKFAKEILEIQAKRKSIGGFQYSPDTVWQEEFESSFPYTETSAQKKAI 467

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           +D+ QDM     M R++ GDVG GKT +A+ A   A+    Q V++AP  +LA+QHY   
Sbjct: 468 QDVKQDMEMGKIMDRLICGDVGYGKTEIAIRATFKAIMDHKQVVLLAPTTVLAEQHYHRF 527

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
           ++   N  I + +++       +++ LE+I  G   ++IGT  L  D I++  L  VI+D
Sbjct: 528 QERFLNYPIEIAVLSRMKTPKEQKEILEKIKSGSIDLVIGTSRLLSDDIEFKDLGFVIID 587

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+ +FGV+ + K  +     ++L MTATPIPRTL L+ LG  D+S +   P GRK IKT 
Sbjct: 588 EEQKFGVKAKEKFKKIRGNINILAMTATPIPRTLNLSLLGIRDLSIVDTPPDGRKTIKTF 647

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIA 519
            I   + + +++ +   L+   + +++   +        + + E+   L +   S   I 
Sbjct: 648 FIE-KKEENIVKAILKELAREGQVFYVFNSV--------KRIEEKVKELEKILPSYVKID 698

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG+MS  + +  ++ F+N    +L++TT+IE GID+ +A+ +IIE  E  GL+Q++QL
Sbjct: 699 YIHGKMSGKELKYKIEQFENMQIDVLVSTTIIENGIDIENANTMIIEGMEKLGLSQIYQL 758

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE--DGFLIAEEDLKQRKEGEILGIK 637
           RGR+GRG   S C  +     SK +  R   L       G  ++ ED++ R  GEILG K
Sbjct: 759 RGRIGRGRRQSYCYCIISEYKSKKAEEREKSLIELGQGSGLDLSMEDMRIRGAGEILGEK 818

Query: 638 QSGMPKFLIAQPELHDSLLEI 658
           Q G  + L      +  +LE 
Sbjct: 819 QHGAIETL--GYHFYMKMLEE 837


>gi|317182774|dbj|BAJ60558.1| transcription-repair coupling factor [Helicobacter pylori F57]
          Length = 999

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 136/411 (33%), Positives = 215/411 (52%), Gaps = 21/411 (5%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++      +    +  F  T  QE AI +I +D+S K  M R+L GDVG GKT VA+ A
Sbjct: 466 KMDTHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHA 525

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +  A   G Q+ ++ P  +LA QH+E ++   +N  + V  +      + + K L+ +  
Sbjct: 526 IFCAFLNGFQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRY--ASEKNKLLKAVEL 583

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           G   +++GTHA+     ++  L LV+VDE+H+FGV+Q+  L + + + H L M+ATPIPR
Sbjct: 584 GLIDVLVGTHAIL--GAKFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPR 641

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-ERLKVVLSEGKKAYWICPQI 492
           TL +       IS +   P  RKP +T +   N  DE++ E +   L    + ++I   I
Sbjct: 642 TLNMALSQIKGISSLKIPPTDRKPSRTFLKEKN--DELLKEIIHRELRRNGQIFYIHNHI 699

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               +   +        L       IAI+H ++S  + E  M  F  G+ ++L+ T+++E
Sbjct: 700 ASISKVKTK-----LEDLIPKL--KIAILHSQISAHESEETMLEFAKGSYQVLLCTSIVE 752

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSV 610
            GI + +A+ III+NA++FGLA LHQLRGRVGRG++   C  L      L++ +  RL  
Sbjct: 753 SGIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLA 812

Query: 611 LKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           L+       G  IA  DL+ R  G +LG  QSG  K +     L+  +LE 
Sbjct: 813 LEKNSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNI--GYALYTRMLED 861


>gi|210635938|ref|ZP_03298631.1| hypothetical protein COLSTE_02570 [Collinsella stercoris DSM 13279]
 gi|210158299|gb|EEA89270.1| hypothetical protein COLSTE_02570 [Collinsella stercoris DSM 13279]
          Length = 421

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 151/422 (35%), Positives = 225/422 (53%), Gaps = 27/422 (6%)

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT VA  A+AA  ++G QA +MAP G+LAQQ+        +   +   ++TG  P A R
Sbjct: 1   GKTAVACFALAAVADSGMQACVMAPTGVLAQQYAVKSGPLLEAAGVSWALLTGATPHAER 60

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
              LER+A G+  ++ GTHA+  D + +  L LV++DEQHRFGV QR  L  K     +L
Sbjct: 61  AMLLERLASGEISVLFGTHAVLGDDVAFEHLSLVVIDEQHRFGVGQRNALRSKGPGADLL 120

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +MTATPIPRTL L+  GD+D S I  +P     + T ++     D     ++  L++G++
Sbjct: 121 VMTATPIPRTLALSVYGDLDTSVIRHRPIAGAGVTTRVLEGPNRDIAYGAVREALAQGRQ 180

Query: 485 AYWICPQI---------------------EEKKESNFRSVVERFNSLHEHF-TSSIAIIH 522
           AY ICP +                        +      V      L   F  + + ++H
Sbjct: 181 AYVICPMVSPQEGAESLEDVPGLDVDENGRAHQAVTLHDVQTEVEELRRVFSPARVEMLH 240

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G+MS   K+ V+D F+ G   +L+ATTV+EVG+DV +A++++IEN E FGLA LHQLRGR
Sbjct: 241 GKMSARAKDEVIDEFRAGRIDVLVATTVVEVGVDVPNATVMLIENGERFGLATLHQLRGR 300

Query: 583 VGRGEEISSCILLYH----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           VGRG    +C ++            +  RL  L  T+DGF +AE DL+ R EGEILG++Q
Sbjct: 301 VGRGSLPGTCFVITEVRSRRGKRTPALERLEALAKTDDGFELAEMDLRLRHEGEILGLRQ 360

Query: 639 SGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIR 698
            G         +    ++E A +DA  +L    DL +V    +R  + + +Y + F+ + 
Sbjct: 361 HGGVSLRFVDLDADVDVIEHAHEDADELLRYSHDLGAVATLPLRHEV-VSRYGDVFKEVS 419

Query: 699 AG 700
            G
Sbjct: 420 GG 421


>gi|257466621|ref|ZP_05630932.1| transcription-repair coupling factor [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917776|ref|ZP_07914016.1| transcription-repair coupling factor [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313691651|gb|EFS28486.1| transcription-repair coupling factor [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 983

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 138/441 (31%), Positives = 237/441 (53%), Gaps = 16/441 (3%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
           S  RE+L  +++L     +L ++ + K   G   + +    ++   + P++ T +Q+ AI
Sbjct: 409 SKKREKL-QEDILKFAKEILEIQAKRKSIGGFQYSPDTVWQEEFESSFPYTETSAQKKAI 467

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           +D+ QDM     M R++ GDVG GKT +A+ A   A+    Q V++AP  +LA+QHY   
Sbjct: 468 QDVKQDMEMGKIMDRLICGDVGYGKTEIAIRATFKAIMDHKQVVLLAPTTVLAEQHYHRF 527

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
           ++   N  I + +++       +++ LE+I +G   ++IGT  L  D +++  L  +I+D
Sbjct: 528 QERFLNYPIEIAVLSRMKTPKEQKEILEKIKNGSIDLVIGTSRLLSDDLEFKDLGFLIID 587

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+ +FGV+ + K  +     ++L MTATPIPRTL L+ LG  D+S +   P GRK IKT 
Sbjct: 588 EEQKFGVKAKEKFKKIRGNLNILAMTATPIPRTLNLSLLGIRDLSIVDTPPDGRKTIKTF 647

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIA 519
            I   + + +++ +   L+   + +++   +        + + E+   L +   S   I 
Sbjct: 648 FIE-KKEENIVKAILKELAREGQVFYVFNSV--------KRIEEKVKELEKILPSYVKID 698

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG+MS  + +  ++ F+N    +L++TT+IE GID+ +A+ +IIE  E  GL+Q++QL
Sbjct: 699 YIHGKMSGKELKYKIEQFENMQIDVLVSTTIIENGIDIENANTMIIEGMEKLGLSQIYQL 758

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE--DGFLIAEEDLKQRKEGEILGIK 637
           RGR+GRG   S C  +     SK +  R   L       G  ++ ED++ R  GEILG K
Sbjct: 759 RGRIGRGRRQSYCYCIISEYKSKKAEEREKSLIELGQGSGLDLSMEDMRIRGAGEILGEK 818

Query: 638 QSGMPKFLIAQPELHDSLLEI 658
           Q G  + L      +  +LE 
Sbjct: 819 QHGAIETL--GYHFYMKMLEE 837


>gi|152991203|ref|YP_001356925.1| transcription-repair coupling factor [Nitratiruptor sp. SB155-2]
 gi|151423064|dbj|BAF70568.1| transcription-repair coupling factor [Nitratiruptor sp. SB155-2]
          Length = 976

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 144/484 (29%), Positives = 234/484 (48%), Gaps = 32/484 (6%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
           +  +ERL         I  +  +++      I    +         +  F  T+ Q+ AI
Sbjct: 420 AKVKERLFEIAAD---IVKIAAQRELTPGKKIITPPD---ITLFQSHAGFEYTEDQKRAI 473

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
             ILQ +S    M  +L GDVG GKT VA+ A+ A V+ G QA ++ P  +L+ QHYE +
Sbjct: 474 DTILQRLSSGKVMDMLLSGDVGFGKTEVAMNAIYAIVKNGYQAAVVVPTTLLSAQHYESL 533

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            K  +   I V  I   +    +++ L+ +  G   +++GTHALF    ++  L LV++D
Sbjct: 534 VKRLEPFNISVTKIDRFVTAKEKKERLQALKEGTFDVVVGTHALF--GAEFKNLGLVVID 591

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+H+FGV+Q+ KL   +   H+L M+ATPIPR+L +      D+S+I   P  RKP++T 
Sbjct: 592 EEHKFGVKQKEKLKAFSKDVHLLSMSATPIPRSLNMALSQLKDLSEIRTPPQNRKPVRTY 651

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           +    +   V E +   L  G + ++I   I   +E       E    L       I ++
Sbjct: 652 VKEY-QDKLVKEVILRELRRGGQVFYIYNSIAGIEEKK-----EDLQQLLPG--KKILVL 703

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           H +++    E  +  F  G   +L++T+++E GI + + + II+E A+ FG+A LHQLRG
Sbjct: 704 HSKIAAATTEKELLRFAQGEYDILLSTSIVESGIHMPNVNTIIVEGADRFGIADLHQLRG 763

Query: 582 RVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGI 636
           RVGRG +   C  L      L++ +  RL  L++      G  +A  DL+ R  G I+G 
Sbjct: 764 RVGRGGKEGFCYYLVEDKQKLTEEAKKRLIALESNSYLGSGAALAYYDLEIRGGGNIIGA 823

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSI----------RILLY 686
           +QSG  K +     L   L E   K  K  + ++P +      +           R+ L 
Sbjct: 824 QQSGHIKNIGYSLYL-QMLEETITKLTKGEIEEEPQVELKLSVNAYISSEVVREDRLKLE 882

Query: 687 LYQY 690
           LY+ 
Sbjct: 883 LYRR 886


>gi|315452882|ref|YP_004073152.1| transcription-repair coupling factor [Helicobacter felis ATCC
           49179]
 gi|315131934|emb|CBY82562.1| transcription-repair coupling factor [Helicobacter felis ATCC
           49179]
          Length = 988

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 140/468 (29%), Positives = 223/468 (47%), Gaps = 19/468 (4%)

Query: 200 PSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
             + E +   + P   K  + +    +     ELL     ++          G+ I  + 
Sbjct: 407 LHLLERYIAPNTPTLDKLGKGSFSKLKAKMRAELLGLAEDIISAHAARMLLEGVQITPDP 466

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
              +      PF  T  QE AI+++L D++  + M R+L GDVG GKT VAL+A+ A   
Sbjct: 467 TQLKAFHHARPFKLTLDQERAIEEVLGDLASGHVMDRLLNGDVGFGKTEVALVAIFALAL 526

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           A  Q+ +  P  +L+ QHY  ++       I +  +        R   L+ +  G+  ++
Sbjct: 527 AKRQSALFVPTTLLSNQHYASLQARLSPFDITIAKLDRFSRDKAR--ILKDLQEGRIDVV 584

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +GTHAL     ++  L LV+VDE+H+FGV+Q+  +   +   H+L M+ATPIPRTL +  
Sbjct: 585 VGTHALL--EAKFKDLGLVVVDEEHKFGVKQKEAIKALSQNVHLLSMSATPIPRTLSMAL 642

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               DIS +   P  + P +T +        + E +   L    + ++I   I+      
Sbjct: 643 AQIKDISYLATPPESKPPSRTFV-KEKTPALLKEIILRELRRKGQVFYIYNHIQSMP--- 698

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             SV +    L  H    + I+H +      ES++  F  G  +LL+ T+++E GI + +
Sbjct: 699 --SVQKSLQDLLPHL--RVEILHSKTPAAQAESLILEFAQGGFELLLCTSIVESGIHLPN 754

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE-- 615
           A+ III++A+ FGLA LHQLRGRVGRG     C  L      LS ++  RL  L+     
Sbjct: 755 ANTIIIDHADSFGLADLHQLRGRVGRGTHEGFCYFLVEDKQDLSPSATKRLLALEKNSSL 814

Query: 616 -DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
             G  IA  DL+ R  G +LG  QSG  K +     L+  +LE A ++
Sbjct: 815 GSGAHIALHDLEIRGGGNLLGSHQSGHIKSI--GYALYARMLEDALQE 860


>gi|295698372|ref|YP_003603027.1| ATP-dependent DNA helicase RecG [Candidatus Riesia pediculicola
           USDA]
 gi|291157022|gb|ADD79467.1| ATP-dependent DNA helicase RecG [Candidatus Riesia pediculicola
           USDA]
          Length = 498

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 160/460 (34%), Positives = 249/460 (54%), Gaps = 21/460 (4%)

Query: 27  LSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK 86
           L K      A     +DL+FY P ++ D+     I+E+       +T  + + +  +  K
Sbjct: 25  LEK-RKLNRAGINSILDLIFYFPKNYKDQTKLSLINELKNGEEAFVTAKVFRKNLKE--K 81

Query: 87  RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFH 146
           +   +I L D +GE+ + FF   + + K  F +   I V GK  + KN+I M+HP Y   
Sbjct: 82  KNQVEIYLRDRSGELIVKFFN-SSFLRKKFFKKNSYIQVYGKAYRQKNKIFMIHPEYKIL 140

Query: 147 NSQDVNFPL---IEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPEWIEKDLLQKKSFPS 201
           NS   NF L   +  +Y   +G+  D   KII +++  +   ++ + I K     K+F  
Sbjct: 141 NSFS-NFSLCNFLTPIYPNISGIRQDKIHKIIKKSIRMIDHCIVQDLIPKPF--NKNFIR 197

Query: 202 IAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
             +A   IH+P          ++  PA++RL ++ELLA Q++ L ++K+       P+ V
Sbjct: 198 FQQAIKNIHHPNSRCSLNELKKYQHPAQKRLIFEELLAFQLSFLKIKKRNFLLSATPLIV 257

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +  I +KI++N+P+S T SQ++AIK+I  D+S+   M R+L GDVG+GKT+VAL +   A
Sbjct: 258 KQSIKKKIIQNLPYSLTNSQKNAIKEIESDLSKNVPMKRLLYGDVGTGKTIVALFSSLCA 317

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           +    Q  +M P  ILA+QH +F KK  +     V  +  +  + +    L+ I  G+A 
Sbjct: 318 ISNEKQVALMTPTEILAKQHADFFKKILKPIGKRVIQLCKDSDRKNYESKLDEIKKGKAL 377

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KATAPHVLLMTATPIPR 433
           +IIGTH++FQD I +  L LVI+DEQHRFGV QR KL +      T  H L+MTATPIPR
Sbjct: 378 VIIGTHSIFQDKIDFCSLSLVIIDEQHRFGVSQRSKLLKKGKLCGTHVHQLIMTATPIPR 437

Query: 434 TLVLTSLGDIDISKITEKP-AGRKPIKTVIIPINRIDEVI 472
           TL +    ++D S I       R P++T+II   R DE+I
Sbjct: 438 TLSMQIYANLDASSIDNLHNPKRIPVRTIIISNIRRDELI 477


>gi|315635838|ref|ZP_07891100.1| transcription-repair coupling factor [Arcobacter butzleri JV22]
 gi|315479817|gb|EFU70488.1| transcription-repair coupling factor [Arcobacter butzleri JV22]
          Length = 995

 Score =  293 bits (749), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 133/438 (30%), Positives = 224/438 (51%), Gaps = 17/438 (3%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +    D+L A    ++ +    +   GI IN + K+ +   ++  F  TK Q+ +IK+I 
Sbjct: 439 KEKVKDKLFAIANDIIKLAAARELVNGIKINTDKKVLEDFQKSAGFEYTKDQKRSIKEIF 498

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D+S    M R+L GDVG GKT VA+ A+ A +  G Q + + P  +LA QHY  I+K  
Sbjct: 499 DDLSSGRVMDRLLSGDVGFGKTEVAMNALLAVILDGYQTIFVCPTTLLATQHYHSIQKRL 558

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           ++  I V  + G      +    + + +G   ++IGTH+L    I+   L LVI+DE+H+
Sbjct: 559 ESFGIRVAKLDGKTTAKEKTSIKKGLENGDIKLVIGTHSLL--DIKTSNLALVIIDEEHK 616

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+Q+ KL Q     H+  M+ATPIPRTL L       +S +   P+ R  ++T +   
Sbjct: 617 FGVKQKEKLKQLREDVHIFSMSATPIPRTLNLALSKLKGMSSLLTPPSERLGVRTYVKEY 676

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           +    + E +      G + +++   I   +        +   ++  +    I IIH ++
Sbjct: 677 SE-KLIKEIILREKRRGGQLFYVHNNIASIEAKK-----KDIEAIVPNI--KIDIIHSQI 728

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
                E ++++F+N    +L+AT+++E GI + +A+ III+ A+ FG+A LHQLRGRVGR
Sbjct: 729 KPEQAEKIIEAFENKEFDILLATSIVESGIHLPNANSIIIDGADRFGIADLHQLRGRVGR 788

Query: 586 GEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
             +   C  +      ++ ++  RL  L++      G  +A +DL+ R  G I+G  QSG
Sbjct: 789 SNKEGYCYYVVEDKKSITDDAVKRLVALESNSYLGSGTALAHQDLEIRGGGNIIGEAQSG 848

Query: 641 MPKFLIAQPELHDSLLEI 658
             K +     L   +LE 
Sbjct: 849 HIKQIGYGLYL--KMLED 864


>gi|309799278|ref|ZP_07693526.1| transcription-repair coupling factor [Streptococcus infantis
           SK1302]
 gi|308117123|gb|EFO54551.1| transcription-repair coupling factor [Streptococcus infantis
           SK1302]
          Length = 538

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 142/426 (33%), Positives = 222/426 (52%), Gaps = 29/426 (6%)

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           M     M R+L GDVG GKT VA+ A   AV    Q V++ P  +LAQQHY   K+  + 
Sbjct: 1   MQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVVLVPTTVLAQQHYSNFKERFEQ 60

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             + V++++    +  + + LE++  GQ  I+IGTH +    +++  L L+I+DE+ RFG
Sbjct: 61  FAVNVDVLSRFRSKKEQTETLEKLKKGQVDILIGTHRVLSKDVEFADLGLMIIDEEQRFG 120

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           V+ +  L +      VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N 
Sbjct: 121 VKHKEALKELKKKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEQND 180

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMS 526
              + + +   +  G + Y++  +++  +        ++ + L E    +SI  +HG+MS
Sbjct: 181 R-VIRDAVLREMDRGGQVYYLYNKVDTIE--------KKVSELQELIPEASIGFVHGQMS 231

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           +I  E+ +  F  G   +L+ TT+IE G+D+ +A+ + IENA+H GL+ L+QLRGRVGR 
Sbjct: 232 EIRLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGLSTLYQLRGRVGRS 291

Query: 587 EEISSCILLYHPP--LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
             I+   L+Y P   L++ S  RL  +K       GF IA  DL  R  G +LG  QSG 
Sbjct: 292 NRIAYAYLMYRPDKTLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNLLGSSQSGF 351

Query: 642 PKFLIAQPELHDSLLE--IARK----------DAKHILTQDPDLTSVRGQSIRILLYLYQ 689
                   EL+  LLE  IA+K          +A+ IL  D  L        R  + +Y+
Sbjct: 352 ID--SVGFELYSQLLEEVIAKKNGTDKKREKGNAELILQIDAYLPDEYISDERHKIEIYK 409

Query: 690 YNEAFQ 695
                 
Sbjct: 410 RIRQID 415


>gi|322516063|ref|ZP_08069000.1| DNA helicase RecG [Streptococcus vestibularis ATCC 49124]
 gi|322125478|gb|EFX96824.1| DNA helicase RecG [Streptococcus vestibularis ATCC 49124]
          Length = 316

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 135/311 (43%), Positives = 208/311 (66%), Gaps = 5/311 (1%)

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           +I+GTH+L QD++ Y++L LVI DEQHRFGV QR    +K   P VL+MTATPIPRTL +
Sbjct: 1   MIVGTHSLIQDTVTYHRLGLVITDEQHRFGVNQRRIFREKGDNPDVLMMTATPIPRTLAI 60

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           T+ G++D+S I + PAGRKPI T  +   ++D V+  +K  L +  + Y+I P IEE + 
Sbjct: 61  TAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLTWIKSKLEKDAQVYFISPLIEESEA 120

Query: 498 SNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            + ++ V     L + F  S  +A++HGRM + +K+ +M  FK+   ++L++TTVIEVG+
Sbjct: 121 LDLKNAVALHQELTDFFGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGV 180

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +V +A++++I +A+ FGL+QLHQLRGRVGRG++ S C+L+ +P  +     R+  +  T 
Sbjct: 181 NVPNATVMVIMDADRFGLSQLHQLRGRVGRGDKQSYCVLVANPK-NDTGKKRMQAMCETT 239

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL-T 674
           DGF++AEEDLK R  GEI G +QSG+P+F +A      ++LE AR+ A  I++ DP+   
Sbjct: 240 DGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARRVASQIVS-DPNWRE 298

Query: 675 SVRGQSIRILL 685
           +   Q + + L
Sbjct: 299 NPDWQVLEVHL 309


>gi|221370025|ref|YP_002521121.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           KD131]
 gi|221163077|gb|ACM04048.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           KD131]
          Length = 1059

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 145/480 (30%), Positives = 230/480 (47%), Gaps = 20/480 (4%)

Query: 195 QKKSFPSIAEAFNIIHNPR----KAKDFEWTSPARERLAYDE-LLAGQIALLLMRKQFKK 249
            +     + EA  I                ++    R   DE +     AL+   K+   
Sbjct: 448 DQHLLVPVEEAGRIWRYGTGADVSLDRLNGSAWTNRRKKLDEGIAEAARALVSAAKERAA 507

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           +          I ++     PF+ +  Q  AI ++  D+     M R++ GDVG GKT +
Sbjct: 508 KSARSFEPPPDIYERFAGRFPFTLSADQRRAIAEVRDDLVAGRPMNRLVLGDVGFGKTEI 567

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           AL A AA   +G Q  ++AP  +LA+QH E  ++  +   + V  ++  +P    + A +
Sbjct: 568 ALRAAAAVALSGAQVALVAPSTVLARQHAETFRRRFEGFGVTVAHLSRLVPSKEAKAARD 627

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
            +  G   I++GTHAL    + +  L L+IVDE+ RFG   + +L       HVL MTAT
Sbjct: 628 GLRDGSIRIVVGTHALLGKGVAFADLGLLIVDEEQRFGAAHKARLRALGADLHVLTMTAT 687

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL    +G  D+S+I   PA R+ ++T +   +    + + L      G +++ I 
Sbjct: 688 PIPRTLQTALVGLQDLSEIATPPARRRAVRT-LTAEDDAAVLRQALLRERRRGGQSFVIV 746

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           P+I E   +       R   L       +A  HG ++  + +  M  F  G   +L+AT+
Sbjct: 747 PRIAEIDATE-----ARLRDLLPEAQLRVA--HGDLAPEELDRAMVEFAAGRGDILLATS 799

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTR 607
           ++E G+DV  A+ +I+   + FGLAQLHQLRGRVGRG   + C L++ P   L + +  R
Sbjct: 800 IVETGLDVPRANTMIVMQPQLFGLAQLHQLRGRVGRGARQAYCYLMHGPGDDLDEAALRR 859

Query: 608 LSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           L  L+  +    G  IA EDL QR  GE+ G +QSG  + +     L+  LL  A + A+
Sbjct: 860 LGTLQAFDRLGAGAAIAAEDLDQRGAGELFGERQSGHVRLI--GLPLYQHLLAQAVRAAR 917


>gi|32266655|ref|NP_860687.1| ATP-dependent DNA helicase RecG [Helicobacter hepaticus ATCC 51449]
 gi|32262706|gb|AAP77753.1| ATP-dependent DNA recombinase RecG [Helicobacter hepaticus ATCC
           51449]
          Length = 628

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 186/650 (28%), Positives = 288/650 (44%), Gaps = 68/650 (10%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ 85
            L K+              + + P S+ID    P    ++    V I  +I    +    
Sbjct: 18  RLKKLKINNLLALI-----ITHVPKSYIDTTLTPT---LTPHSNVLIKVHIHDTKTLGFG 69

Query: 86  KRRPYKI--LLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
           K     I   ++D    + ++ F+      K +F E     V GK++    R  ++ P  
Sbjct: 70  KNARLSIYATMSDFNQPLEMIIFH-PKPFHKKIFSEDSTHYVLGKLETYNQRYTLIQPKS 128

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
           I H         I   +     LS    +++   A++   +L   I +++ QK       
Sbjct: 129 IKH------INTITPHFKTT-LLSAKAMQELTQAAINIDNLLSCGIPQEIAQK------- 174

Query: 204 EAFNIIHNPRKAKDFEWTSP------ARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
                I  P       +             L + E+       LL RK+   +     N 
Sbjct: 175 --IYEIFTPSSHFMLAFKKHNALPQEHMNALKFIEIYHY--LHLLSRKKIHFKAKYRCNN 230

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +       + ++PFS T  Q SAIKDI  D+  K    R++ GDVG GKT+V L A+   
Sbjct: 231 D---ITPFIESLPFSLTSGQCSAIKDISLDLDSKIAARRLIMGDVGCGKTIVILCAVMMT 287

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                 +++MAP  ILA Q YE  K+      I + +IT             R    +AH
Sbjct: 288 YP--HTSILMAPTTILATQLYEEAKRLLPPF-IKIHLITAKT----------RQDLQEAH 334

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA------TAPHVLLMTATPI 431
            IIGT AL    I    + LV+ DEQHRFG  QR  L +          PH+L  +ATPI
Sbjct: 335 FIIGTQALLYREITLENVALVMSDEQHRFGTNQRYGLEKIGQDAHKNARPHILQFSATPI 394

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           PRTL + +   ID+S I + P  +K I T I+  +    ++  L+  +++G +A  I P 
Sbjct: 395 PRTLAMINAQFIDLSVIQDLPF-KKDISTSIVDKSTFKTLLSALQNEINQGHQAIIIYPL 453

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +EE +  ++ S+ E  +   +HF S   + +    D +K++V+D F +    LL+ATT++
Sbjct: 454 VEESEHLDYLSLNEGLSFWQKHFNS---VHYTSGKDKNKQNVIDDFAHNGS-LLLATTLV 509

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           EVGI +   S I+I   E  GLA LHQLRGRV R      C L  H P +     RL   
Sbjct: 510 EVGISLPKVSTIVIVAPERLGLATLHQLRGRVSRNGLKGYCYLYTHQPQN----ERLKAF 565

Query: 612 KNTEDGFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIAR 660
            +T +GF IAE DLK R  G++L G +QSG  +F+       +++++ A+
Sbjct: 566 CSTLNGFDIAELDLKYRNSGDLLSGERQSGD-EFIYFDMGSDENIIKEAK 614


>gi|118474341|ref|YP_891912.1| transcription-repair coupling factor [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118413567|gb|ABK81987.1| transcription-repair coupling factor [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 985

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 133/479 (27%), Positives = 227/479 (47%), Gaps = 25/479 (5%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +    ++L      ++ +  + +   GI +N + + A+    +  F  T  QE A+ DI 
Sbjct: 427 KEKVREKLFVIANKIIALAAKRELIEGIRLNADSQYAK-FKSSAGFIYTDDQEKAVNDIQ 485

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
             +     M  +L GDVG GKT VA+ A+   V++G QA+   P  +L+ QH++ +K+  
Sbjct: 486 NHLKSGRVMDMLLSGDVGFGKTEVAMNAIFLCVKSGYQALFFVPTTLLSSQHFKSLKERF 545

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
               I V  +        +   ++ +   +  ++IGTH+L    ++   L L+I+DE+H+
Sbjct: 546 DKFNIDVRRLDRFTSTKEKSNIIKNLNDAKPMVVIGTHSLLS--LKAANLGLIIIDEEHK 603

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+Q+ KL + +   H+L M+ATPIPR+L +        S +   P  R  ++T +   
Sbjct: 604 FGVKQKEKLKEISEHSHILSMSATPIPRSLNMALSKVKSYSTLLTPPLDRMDVRTFVKEW 663

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           +    + E +   +  G + +++   I +       S+     +L  +    +  +H ++
Sbjct: 664 DE-KLIKEVILREIRRGGQIFYVHNLISDMP-----SMERELKALIPNL--KVLTLHSKI 715

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
                E  M  F N    LL+ T++IE GI + +A+ III++A  FG+A LHQLRGRVGR
Sbjct: 716 DAKTTEDEMMKFANKEYDLLLCTSIIESGIHLPNANTIIIDDANKFGIADLHQLRGRVGR 775

Query: 586 GEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
             +   C  L      LS  +  RL  L++      G L+A  DL+ R  G +LG  QSG
Sbjct: 776 SNKQGYCYFLVGDKNELSSEAVKRLIALESNSFLGSGALLAYHDLEIRGGGNLLGEAQSG 835

Query: 641 MPK---FLIAQPELHDS---LLEIARKDAKHI---LTQDPDLTSVRGQSIRILLYLYQY 690
             +   + +    L D    LL    K+   I   L+ +  L +      RI L LY+ 
Sbjct: 836 HIEAIGYTLYLKMLEDEINLLLNHQTKEMTQIDIKLSVNAFLNTDLINEDRIRLELYRR 894


>gi|157736671|ref|YP_001489354.1| transcription-repair coupling factor [Arcobacter butzleri RM4018]
 gi|157698525|gb|ABV66685.1| transcription-repair coupling factor [Arcobacter butzleri RM4018]
          Length = 995

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 133/438 (30%), Positives = 224/438 (51%), Gaps = 17/438 (3%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +    D+L A    ++ +    +   GI IN + K+ +   ++  F  TK Q+ +IK+IL
Sbjct: 439 KEKVKDKLFAIANDIIKLAAARELVNGIKINTDKKVLEDFQKSAGFEYTKDQKRSIKEIL 498

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D+S    M R+L GDVG GKT VA+ A+ A +  G Q + + P  +LA QHY  I+K  
Sbjct: 499 DDLSSGRVMDRLLSGDVGFGKTEVAMNALLAVILDGYQTIFVCPTTLLATQHYHSIQKRL 558

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           ++  I V  + G      +    + + +    ++IGTH+L    I+   L LVI+DE+H+
Sbjct: 559 ESFGIRVAKLDGKTTAKEKTSIKKGLENADIKLVIGTHSLL--DIKTSNLALVIIDEEHK 616

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+Q+ KL Q     H+  M+ATPIPRTL L       +S +   P+ R  ++T +   
Sbjct: 617 FGVKQKEKLKQLREDVHIFSMSATPIPRTLNLALSKLKGMSSLLTPPSERLGVRTYVKEY 676

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           +    + E +      G + +++   I   +        +   ++  +    I IIH ++
Sbjct: 677 SE-KLIKEIILREKRRGGQLFYVHNNIASIEAKK-----KDIEAIVPNI--KIDIIHSQI 728

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
                E ++++F+N    +L+AT+++E GI + +A+ III+ A+ FG+A LHQLRGRVGR
Sbjct: 729 KPEQAEKIIEAFENKEFDILLATSIVESGIHLPNANSIIIDGADRFGIADLHQLRGRVGR 788

Query: 586 GEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
             +   C  +      ++ ++  RL  L++      G  +A +DL+ R  G I+G  QSG
Sbjct: 789 SNKEGYCYYVVEDKKSITDDAVKRLVALESNSYLGSGTALAHQDLEIRGGGNIIGEAQSG 848

Query: 641 MPKFLIAQPELHDSLLEI 658
             K +     L   +LE 
Sbjct: 849 HIKQIGYGLYL--KMLED 864


>gi|319956410|ref|YP_004167673.1| ATP-dependent DNA helicase recg [Nitratifractor salsuginis DSM
           16511]
 gi|319418814|gb|ADV45924.1| ATP-dependent DNA helicase RecG [Nitratifractor salsuginis DSM
           16511]
          Length = 606

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 180/653 (27%), Positives = 284/653 (43%), Gaps = 64/653 (9%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ 85
              K+           +DL    PSS+ D     +I      R+ T    +      +++
Sbjct: 9   LFQKLK------IRTLLDLALILPSSYEDTRLASRI---EPGRVQTFEAQV---EDRRIR 56

Query: 86  KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIF 145
             R          G      F++ T   + +F  G +  + GK+        +  P  + 
Sbjct: 57  GGRMQVRFFLPALGRRISGQFFKATPYHQRLFEPGSRHIIHGKVSLFNGWPQIAQPRSLK 116

Query: 146 HNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD---LLQKKSFPSI 202
                  +  I   Y     L     + +I   ++   +  E ++ +   LL +  F   
Sbjct: 117 E------YGRIFPRYKTV--LKESQMRALIENYVTERNLFAEGLQSEEVGLLMRLHFLER 168

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
              ++    P    + E        L + E         L + + K+     +    +  
Sbjct: 169 ---YSEAGAPPPQIEGEVVGQ----LKFIEAYNH-----LRKLRSKRHDYPALKALNRPI 216

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQK-NRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           +  +  +PF+ T  Q+  I +I +D+SQK     R++ GDVGSGKT+V L A   A   G
Sbjct: 217 EPFVETLPFTLTPDQQKVIAEIQKDLSQKEKAARRMIIGDVGSGKTMVILAAAVMA--GG 274

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            ++V+MAP  ILA+Q YE   KY    ++ V ++     +   R+         A  IIG
Sbjct: 275 DRSVLMAPTSILARQLYEEACKYLPR-ELKVALVMQGNSEGDYRE---------ADFIIG 324

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKL----TQKATAPHVLLMTATPIPRTLVL 437
           THAL        +  LV+VDEQHRFG +QR  L    +Q    PH L  +ATPIPRT  +
Sbjct: 325 THALLYLE-DLPEAALVMVDEQHRFGTKQRALLEALVSQGERRPHYLQFSATPIPRTQAM 383

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                ID+S IT+ P   K I + +I  +   E++  ++  L E  +   + P +EE ++
Sbjct: 384 MESELIDVSLITQTPFE-KEIHSRVIGRSDFPELLRHIEKELEEDHQVLIVYPLVEESEQ 442

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             ++S+ E      E     + + HGR  D +KE ++  F+    K+L+ATTVIEVGI +
Sbjct: 443 IPYQSIDE-ARGFWEKRYEGVYVTHGR--DRNKEEILLEFREQG-KILLATTVIEVGISL 498

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              + I+I  AE  GLA LHQLRGRVGR    S C L  +      S  RL     T+ G
Sbjct: 499 PRLTTIVIVGAERLGLATLHQLRGRVGRNGLKSWCFLYTN----LQSSERLEKFCRTKSG 554

Query: 618 FLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           F IA  DL  R  G+I+ G  QSG  KF        + ++  A++   + +T+
Sbjct: 555 FEIARLDLAYRDSGDIVDGTIQSGQ-KFRWLDLAEDEEIVRRAKERLNNGITE 606


>gi|29829213|ref|NP_823847.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
 gi|29606319|dbj|BAC70382.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
            MA-4680]
          Length = 1075

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 156/434 (35%), Positives = 250/434 (57%), Gaps = 37/434 (8%)

Query: 302  VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY-----------TQNTQI 350
              +  T+VAL AM A V++GGQA ++AP  +LAQQH+  I +                  
Sbjct: 644  TVTHNTMVALRAMLAVVDSGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGAEHST 703

Query: 351  IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQ 410
             V ++TG+M  A RR+AL  +  G+A I+IGTHAL +D +Q++ L LV+VDEQHRFGV+Q
Sbjct: 704  KVVLLTGSMGAAARRQALLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQ 763

Query: 411  RLKLT-QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-- 467
            R  L  +    PH+L+MTATPIPRT+ +T  GD++ S + + PAGR PI + ++P     
Sbjct: 764  RDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKP 823

Query: 468  --IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV----------------ERFNS 509
              +    ER++  + +G +AY +C +I ++++   ++                  E  + 
Sbjct: 824  HFLARAWERVREEVGKGHQAYVVCARIGDEEDDPKKAKKKSPEDEAEKRPPLAVLEVADQ 883

Query: 510  LHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
            L +       + ++HGRM   DK++VM  F  G   +L+ATTVIEVG++V +A+ ++I +
Sbjct: 884  LAKGPLQGLGVEVLHGRMPPDDKDAVMRRFAAGERDVLVATTVIEVGVNVPNATAMVIMD 943

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            A+ FG++QLHQLRGRVGRG     C+L+   P +  +  RL+ + +T DGF ++  DL+Q
Sbjct: 944  ADRFGVSQLHQLRGRVGRGSAAGLCLLVTEMPEASPARQRLNAVASTLDGFELSRIDLEQ 1003

Query: 628  RKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R+EG++LG  QSG+     +      + ++  AR++A  ++  DP+L  + G  +R  L 
Sbjct: 1004 RREGDVLGQAQSGVRSSLRMLAVIEDEEIIAEAREEAAAVVAADPELGHLPG--LRTALE 1061

Query: 687  LYQYNEAFQFIRAG 700
                 E  Q++  G
Sbjct: 1062 ALLDEEREQYLDKG 1075



 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 68/333 (20%), Positives = 127/333 (38%), Gaps = 37/333 (11%)

Query: 16  FRGV-GKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITG 74
            + V G   +  +++ +           DLL ++P  + +R     ++++  +  VT+  
Sbjct: 11  LKKVLGPATAKVMAEHL-----GLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVA 65

Query: 75  YISQHS-------SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTG 127
            ++               K +  ++ + DG+G + L+FF             G +   +G
Sbjct: 66  QVADARLHTFASAKAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHKDLLPGTRAMFSG 125

Query: 128 KIKKLKNRIIMVHPHYIFHNSQDVN--------FPLIEAVYSLPTGLSVDLFKKIIVEAL 179
           K+     R+ + HP Y      D             +  +Y     L      K +   L
Sbjct: 126 KVSVFNRRLQLAHPAYELLRGADDEAAESVDSWAGALIPIYPATAKLESWKIAKSVQTVL 185

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239
             +    + +   L   +   S+ EA   IH P    D E    AR RL +DE    Q+A
Sbjct: 186 PSVQEALDPLPDSLRDGRGLISLPEALLKIHRPHTKADIE---DARARLKWDEAFVLQVA 242

Query: 240 LLLMRKQFKKEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           L   R    +        +           +PF+ T+ Q+   K+I  D++ ++ M R+L
Sbjct: 243 LARRRHADAQLPAAARKPKPDGLLTAFDAKLPFTLTEGQQKVSKEIFDDLATEHPMHRLL 302

Query: 299 QGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
           QG+VGSGK        A  +++    +++AP G
Sbjct: 303 QGEVGSGK--------AQPLDS----LVLAPTG 323


>gi|303273712|ref|XP_003056209.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462293|gb|EEH59585.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 426

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 127/415 (30%), Positives = 210/415 (50%), Gaps = 15/415 (3%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN-RMLRILQGDVG 303
           K+              I ++   +  ++ T  Q +AI+D   D+S+++  M RI+ GDVG
Sbjct: 6   KRLHCIRAPYTPPCEDIYKRFNDSFSYTLTPDQATAIRDCYDDLSKRDTPMDRIVVGDVG 65

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
            GKT VA+ A+   + +GGQ  ++AP  +LA+QH   I    +   + VE++  N+ ++ 
Sbjct: 66  FGKTEVAMRAIFRVLSSGGQVFVLAPTTVLAKQHAATISARLEIFDMSVELLNRNVKESS 125

Query: 364 RRKALERIAHGQAHIIIGTHALFQ-DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
           R   L+R   G+  +++GTH +       Y +L L+++DE+ RFGV+ + +++       
Sbjct: 126 RLAVLQRWMMGKTDVVVGTHLMLNLPPENYKRLNLLVIDEEQRFGVKHKDQISALKATVD 185

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           VL ++ATPIPRTL +   G  D S +T  P  R+PI T +   N    V + ++  L  G
Sbjct: 186 VLTLSATPIPRTLHMAITGFRDASLVTTPPPERRPINTQLQVYNE-KTVCDAIQFELDRG 244

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            + +++ P+I+          ++R   L       I   HG+M     +  MD F  G  
Sbjct: 245 GQIFYVVPKIQ-----MIDGALQRLQGLFPCL--RIMKAHGKMKGDQLDIAMDYFACGKA 297

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PL 600
            +L+ TT++E G+D+ + + IIIE  + FGLA L+QLRGRVGR    +   + +     L
Sbjct: 298 DVLLCTTIVESGLDIPNVNTIIIEEVQQFGLASLYQLRGRVGRACRQAYAYMFHADIGDL 357

Query: 601 SKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
              +  RL  L+      +GF +AE D+  R  G I G KQSG    + A   + 
Sbjct: 358 RSEAQERLLALEECCGLGEGFKLAERDMAIRGVGTIFGEKQSGQVDNIGADLYME 412


>gi|291277211|ref|YP_003516983.1| transcription-repair coupling factor [Helicobacter mustelae 12198]
 gi|290964405|emb|CBG40255.1| transcription-repair coupling factor [Helicobacter mustelae 12198]
          Length = 991

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 133/447 (29%), Positives = 223/447 (49%), Gaps = 25/447 (5%)

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
             I  L  R++  +     I+              F  T+ QE  I++I  DMS    M 
Sbjct: 447 DSIISLAARRKLIEGK--KIDTTLPEILFFKEQAGFVLTEDQERCIQEIFADMSSGQVMD 504

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+L GDVG GKT VA+ A+ AA + G QA+++ P  +LA QHY  +K+  +   + V  +
Sbjct: 505 RLLSGDVGFGKTEVAMNAIYAACQNGFQALMIVPTTLLALQHYHTLKERLK--GLRVARL 562

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
              +    ++  L+ +  G+  +++GTH+L    + +  L L+++DE+H+FGV+Q+  + 
Sbjct: 563 DRFVSARSKKGILQGLLEGKIDVVVGTHSLL--GVGFKNLGLIVIDEEHKFGVKQKEAIK 620

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
             +   H+L M+ATPIPRTL +       +S +   P+ R+  KT +   +    + E +
Sbjct: 621 SLSKDVHLLSMSATPIPRTLNMALSQIKGMSSLLTPPSERQSTKTFVKEKS-ASLIKEVI 679

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              L    + ++I   I     +N   +     +L       IA++H ++     E ++ 
Sbjct: 680 LRELRRNGQVFYIHNNI-----ANIPMIERELKALLPQLE--IALLHSQIDSKTTEEILL 732

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SF      LL+ T+++E GI + +A+ II++ A+HFGLA LHQLRGRVGRG+    C  L
Sbjct: 733 SFAEKKTHLLLCTSIVESGIHLPNANTIIVDGADHFGLADLHQLRGRVGRGDREGFCYYL 792

Query: 596 YHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE 650
                 +++ +  RL  L+       G +IA +DL+ R  G +LG  QSG  K +     
Sbjct: 793 IDDRESITQEATKRLLALEKNSFLGSGAMIAYQDLEIRGGGNLLGEAQSGHIKNIGYNLY 852

Query: 651 LHDSLLEIA----RKDAKHILTQDPDL 673
           L   +LE A      + + I  +D +L
Sbjct: 853 L--KMLEDAIYQLSSNKEQIEERDVEL 877


>gi|319956027|ref|YP_004167290.1| transcription-repair coupling factor [Nitratifractor salsuginis DSM
           16511]
 gi|319418431|gb|ADV45541.1| transcription-repair coupling factor [Nitratifractor salsuginis DSM
           16511]
          Length = 998

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 138/424 (32%), Positives = 221/424 (52%), Gaps = 19/424 (4%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            Q   + GIP+ V+       L    F  T+ Q  AI+ I++++S    M R+L  DVG 
Sbjct: 455 AQRLLQRGIPLKVDPAEHALFLSQAGFEHTEDQMEAIRQIMEELSGGGMMDRLLSADVGF 514

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT VA+ A+ AAV  G QA+++ P  +L+ QHY  +K+     +I V  +    P   +
Sbjct: 515 GKTEVAMNAIFAAVRNGYQAMMVVPTTLLSAQHYRSLKERFAPWEIEVAQLDRYTPAKQK 574

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R+ L R+  G+  +++GTHAL     ++  L LV+VDE+H+FGV+Q+  L + A   H+L
Sbjct: 575 REILRRLEEGELKVVVGTHALL--GAKFKNLALVVVDEEHKFGVKQKEALKEMALNVHLL 632

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            M+ATPIPR+L +        S+I   P  R  ++T +   +    V E +      G +
Sbjct: 633 SMSATPIPRSLNMALSKIKSFSEILTPPTERVGVRTFVKSFD-PKIVKEAILRERRRGGQ 691

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543
            +++   I   +        E+   L E      + ++H +++    E  M  F+ G   
Sbjct: 692 TFYVYNSIAGIE--------EKAKQLRELIPDLRMTVLHSKVTAAQTEKEMMKFEAGEYD 743

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LS 601
           LL++TT++E GI + +A+ +I++ AE+FG+A LHQLRGRVGRG +   C LL      L 
Sbjct: 744 LLLSTTIVESGIHLPNANTMIVDGAENFGIADLHQLRGRVGRGGKEGYCYLLVEDKERLP 803

Query: 602 KNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           +N+  RL  L+       G ++A  DL+ R  G ++G  QSG  K +     L   +LE 
Sbjct: 804 ENARRRLLALESHSELGSGAVLAFHDLEIRGGGNLIGEAQSGHIKQIGYSLYL--RMLED 861

Query: 659 ARKD 662
           A K+
Sbjct: 862 AIKE 865


>gi|27379778|ref|NP_771307.1| transcription-repair coupling factor [Bradyrhizobium japonicum USDA
           110]
 gi|27352931|dbj|BAC49932.1| bll4667 [Bradyrhizobium japonicum USDA 110]
          Length = 1093

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 157/505 (31%), Positives = 241/505 (47%), Gaps = 29/505 (5%)

Query: 200 PSIAEAFNIIHNPRKAK-DFEWTSPARERLAYDELLAGQIALLLMRK--QFKKEIGIPIN 256
           P +A  +     P K   D    S    R    E        +L +   Q ++     + 
Sbjct: 494 PDLALMWPYATEPGKLALDKADGSSWWARRTEAEREIQIAGKVLAKHISQRRRRRADKLV 553

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
             G   +K +   P+  T  Q  AI+D+L+D++  + M R++ GDVG GKT VAL A AA
Sbjct: 554 PPGSAYEKFVARFPYFTTVDQAKAIRDVLEDLASGHPMDRVICGDVGFGKTEVALRAAAA 613

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            V +G Q  I  P  +LA+QH    +K      I V  ++     A  R   E +  G+ 
Sbjct: 614 VVLSGKQVAIAVPTTVLARQHVATFQKRFAPFDIEVGNLSRATSGAELRATREGLRSGRI 673

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            +++GT AL    +++  L LVI+DE+  FG  ++ +L+  A   HVL+M+ATPIPRTL 
Sbjct: 674 KVVVGTQALGGKDVKFDDLGLVIIDEEQHFGAAEKARLSSLAKNVHVLMMSATPIPRTLA 733

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
               G  D+S I   P  R P+ T I P++    +   L        +++ ICP+I++  
Sbjct: 734 AGLAGFRDLSVIASPPVHRLPVATRIAPLSD-AAIASALLREQRRHGQSFLICPRIQDLD 792

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                 ++ R  ++       I  +HGR++  + +  M SF  G   +L+AT ++E G+D
Sbjct: 793 -----PMLARVQAVAGDL--RIVCLHGRLAADEIDDRMMSFVEGRADVLLATNIVESGLD 845

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE- 615
           +  A+ I++   E FGLAQLHQLRGRVGR    +   LL     S  S  RL+VL+    
Sbjct: 846 IPRANTIVVCWPEKFGLAQLHQLRGRVGRSGIRAFAHLLTETN-SGQSEKRLAVLEEFSR 904

Query: 616 --DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ--DP 671
              GF I+E DL  R  G++   +QSG     +  P L+  LL++A +           P
Sbjct: 905 PGAGFAISERDLDLRGAGDLFSEQQSGH--VQVFGPVLYSHLLKMASEKVDEERAAVWVP 962

Query: 672 DL----------TSVRGQSIRILLY 686
           DL          T V  + +R+ LY
Sbjct: 963 DLNLPVADMLPETYVHSEPVRLELY 987


>gi|313681651|ref|YP_004059389.1| transcription-repair coupling factor [Sulfuricurvum kujiense DSM
           16994]
 gi|313154511|gb|ADR33189.1| transcription-repair coupling factor [Sulfuricurvum kujiense DSM
           16994]
          Length = 995

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 208/413 (50%), Gaps = 19/413 (4%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           I+V+    ++      F  T  Q SAI  I++D+S  + M R+L GDVG GKT VA+ A+
Sbjct: 462 ISVDAGELRRFQDAAGFDYTPDQSSAISSIVRDLSSGHIMDRLLSGDVGFGKTEVAMNAI 521

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
            AA + G Q++++ P  +L+ QH++ +K       + V  +   +    +   L  +  G
Sbjct: 522 FAAAKGGYQSLLVVPTTLLSSQHFQSLKTRLAPFGLRVAKLDRFVSTKEKNATLRALEAG 581

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           +   ++GTHALF   +   KL +VI+DE+H+FGV+Q+ KL       H+L M+ATPIPR+
Sbjct: 582 ELDCVVGTHALF--GVSCKKLGIVIIDEEHKFGVKQKEKLKSLYENVHLLSMSATPIPRS 639

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L         +S++   P+ R  ++T +   +    + E +   L  G + +++   I+ 
Sbjct: 640 LNQALSSIKTMSELLTPPSERLGVRTFVKNYDE-KLIKEVILRELRRGGQVFYVHNSIDS 698

Query: 495 KKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               +          L        I I+H ++S    E  +  F N    +L+AT++IE 
Sbjct: 699 MIIKSG--------ELKAILPDLRILILHSQISANQTEEELAKFANREYDVLLATSIIES 750

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL 611
           GI +   + +II+ A+ FG+A LHQLRGRVGRG        +      L++ +  RL  L
Sbjct: 751 GIHMPTVNTMIIDGADRFGMADLHQLRGRVGRGHIEGYAYFIVDDKENLTEEAKKRLVAL 810

Query: 612 KNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           ++      G ++A  DL+ R  G ++G  QSG  K +     L+  +LE A K
Sbjct: 811 ESNSFLGSGSMLAYHDLEIRGGGNLVGDAQSGHIKNI--GYALYLRMLEDAIK 861


>gi|188528292|ref|YP_001910979.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Shi470]
 gi|188144532|gb|ACD48949.1| DNA recombinase (recG) [Helicobacter pylori Shi470]
          Length = 623

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 174/636 (27%), Positives = 281/636 (44%), Gaps = 63/636 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +               +   I    ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLKHF---ELGLSGVLEVDILDKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    N F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFN-YSAFHHNQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLISL-ENLKKEGIKENIAHLLLEIFF--PTPHFV 172

Query: 216 KDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE    ++S     L Y E+L       L RK+ +    I      +  +  + ++PF
Sbjct: 173 KDFETHKNFSSQHLNALKYIEMLFYMKN--LERKKLQFNAKIACPNNSERFKAFIASLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 QLTNDQQNAIKEIQSDLASPIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E I     H++IGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSHKKRSNHLFETI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A      PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASSKGHKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F   +    G+  +  KE V++ F+  +  +L+ATT+IEVGI +   S+++I  
Sbjct: 463 SFWQKRF-KKVYTTSGQDKN--KEEVIEEFRE-SGSILLATTLIEVGISLPRLSVMVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           RK G++L G +QSG   F        ++++   ++D
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDENIIAEVKRD 609


>gi|308062783|gb|ADO04671.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Cuz20]
          Length = 621

 Score =  286 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 174/643 (27%), Positives = 285/643 (44%), Gaps = 63/643 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +               +   I    ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLKHF---ELGLSGVLEVDILDKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    N F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFN-YSAFHHNQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLISL-ENLKKEGIKENIAHLLLEIFF--PTPHFV 172

Query: 216 KDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE    ++S     L Y E+L       L RK+ +    I      +  +  + ++PF
Sbjct: 173 KDFETHKNFSSQHLNALKYIEMLFYMKN--LERKKLQFNAKIACPNNSERLKAFIASLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 QLTNDQQNAIKEIQSDLASPIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E I     H++IGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSHKKRSNHLFETI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASNKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F   +    G+  +  KE V++ F+  +  +L+ATT+IEVGI +   S+++I  
Sbjct: 463 SFWQKRF-KKVYTTSGQDKN--KEEVIEEFRE-SGSILLATTLIEVGISLPRLSVMVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           RK G++L G +QSG   F        ++++   ++D    +++
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDENIIAEVKRDFLRSVSR 616


>gi|268680233|ref|YP_003304664.1| transcription-repair coupling factor [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268618264|gb|ACZ12629.1| transcription-repair coupling factor [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 989

 Score =  286 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 129/439 (29%), Positives = 220/439 (50%), Gaps = 17/439 (3%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +    + LL     ++ +  + +   G+ I +E +  Q    +  F  T+ Q+  I +IL
Sbjct: 431 KAKTKERLLEIASEIIAIAAKREMVEGLNIAIENEELQAFQADAGFMYTEDQKRVIDEIL 490

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D      M R+L GDVG GKT VA+ A+ A V+ G QA+++AP  +L  QH++ +    
Sbjct: 491 VDFKSGKMMDRLLSGDVGFGKTEVAMNAIFATVQKGFQALLIAPTTLLCAQHFKSLSHRF 550

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
               I V  +      A ++  L+ +  G   + +GTH+LF   ++ +   LV+VDE+H+
Sbjct: 551 AKYNIKVAQLDRFTTAAQKQLILKELKSGALQVCVGTHSLF--DVELFNPALVVVDEEHK 608

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+Q+ KL       H+L M+ATPIPR+L +        S++   P+ R+ ++T +   
Sbjct: 609 FGVKQKEKLKNFRENVHILSMSATPIPRSLNMALSSIKQYSQLLTPPSDREDVRTFVKEY 668

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           +    + E +   +  G + +++  +I   +        +R   L       I  +H  +
Sbjct: 669 DE-KVIKEAILREMRRGGQIFFVHNRIATIEA-------KRKELLSMMPNLRILTLHSEI 720

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S    E  M  F+     LL++T++IE GI + + + I+I+ A+HFG+A LHQLRGRVGR
Sbjct: 721 SASVTEKEMLRFEEKAYDLLLSTSIIESGIHIPNVNTIMIDAADHFGMADLHQLRGRVGR 780

Query: 586 GEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
            +    C  L      LS+++  RL  L++      G ++A  DL+ R  G ++G  QSG
Sbjct: 781 SKRQGFCYFLVKEKESLSESAKKRLIALESNSYLGSGSILAYHDLEIRGGGNLVGEAQSG 840

Query: 641 MPKFLIAQPELHDSLLEIA 659
             K +     L+  +LE A
Sbjct: 841 HLKNI--GYALYLRMLEDA 857


>gi|217034285|ref|ZP_03439702.1| hypothetical protein HP9810_885g16 [Helicobacter pylori 98-10]
 gi|216943257|gb|EEC22722.1| hypothetical protein HP9810_885g16 [Helicobacter pylori 98-10]
          Length = 621

 Score =  286 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 174/644 (27%), Positives = 286/644 (44%), Gaps = 63/644 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +               +   I    ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLKHF---ELGLSGVLEVDILDKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    N F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFN-YSAFHHNQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLISL-ENLKKEGIKENIAHLLLEIFF--PTPHFV 172

Query: 216 KDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE    ++S     L Y E+L       L RK+ +    I      +  +  + ++PF
Sbjct: 173 KDFETHKNFSSQHLNALKYIEMLFYMKN--LERKKLQFNAKIACPNNSERLKAFIASLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 KLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E I     H++IGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSYKKRSNHLFETI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-LKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F   +    G+  +  KE V++ F+  +  +L+ATT+IEVGI +   S+++I  
Sbjct: 463 SFWQKRF-KKVYTTSGQDKN--KEEVIEEFRE-SGSILLATTLIEVGISLPRLSVMVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           RK G++L G +QSG   F        ++++   ++D    ++++
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDENIIAEVKQDFLRSVSRE 617


>gi|317011657|gb|ADU85404.1| ATP-dependent DNA helicase RecG [Helicobacter pylori SouthAfrica7]
          Length = 621

 Score =  286 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 172/634 (27%), Positives = 280/634 (44%), Gaps = 61/634 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG--EI 101
           LL Y P  + D     +           +  ++ +  ++     +  K+ +        +
Sbjct: 20  LLSYTPKGYKDLSLLERF---ETGLCGVLEVHVLEKRNYA----KVLKVFVYSKRFCKNL 72

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
            L+FF        N F  G  + + GK+++       I+  P  +               
Sbjct: 73  ELVFFNYSAFYY-NQFKIGESLFIYGKLEQSSFNQAYIINTPKILKEFGGISL------- 124

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK--AKD 217
             L   +      K I E L  L  L E ++K+ +++    SIA     I  P     KD
Sbjct: 125 --LFKKVKNH---KKIQENLQSLLSL-ENLKKEGIKE----SIAHLLLEIFFPTPHFLKD 174

Query: 218 FEWTSP----ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           FE            L Y E+L       L RK+ +    I      +  +  + ++PF  
Sbjct: 175 FETNKTFPSQHLNALKYIEMLFYMKN--LERKKLQFNAKIVCPNNSERLKAFIASLPFQL 232

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  IL
Sbjct: 233 TNDQQNAIKEIQNDLTSPIACKRLIVGDVGCGKTMVILASMVLAYPN--KTLLMAPTSIL 290

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+Q Y    K+      +  ++ GN  + H  + +        H++IGT AL  D     
Sbjct: 291 AKQLYNEALKFLPPYFEVELLLGGNHKKNHLFEKI-------THVVIGTQALLFDKRDLN 343

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + I 
Sbjct: 344 EFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTMIR 403

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  + 
Sbjct: 404 EIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGASF 462

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
             + F   +    G+  +  KE V++ F+     +L+ATT+IEVGI +   S+++I   E
Sbjct: 463 WQKRF-KKVYTTSGQDKN--KEEVIEEFRECGS-ILLATTLIEVGISLPRLSVMVILAPE 518

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
             GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ RK
Sbjct: 519 RLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEYRK 574

Query: 630 EGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
            G++L G +QSG   F        +S++   ++D
Sbjct: 575 SGDLLQGGEQSGN-SFEYIDLAKDESIIAEVKQD 607


>gi|308064280|gb|ADO06167.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Sat464]
          Length = 621

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 174/643 (27%), Positives = 284/643 (44%), Gaps = 63/643 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +               +   I    ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLKHF---ELGLSGVLEVDILDKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    N F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFN-YSAFHHNQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLISL-ENLKKEGIKENIAHLLLEIFF--PTPHFV 172

Query: 216 KDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE    ++S     L Y E+L       L RK+ +    I      +  +  + ++PF
Sbjct: 173 KDFETHKNFSSQHLNALKYIEMLFYMKN--LERKKLQFNAKIACPNNSERLKAFIASLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 QLTNDQQNAIKEIQSDLASPIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E I     H++IGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSHKKRSNHLFETI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A      PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASSKGHKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F   +    G+  +  KE V++ F+  +  +L+ATT+IEVGI +   S+++I  
Sbjct: 463 SFWQKRF-KKVYTTSGQDKN--KEEVIEEFRE-SGSILLATTLIEVGISLPRLSVMVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           RK G++L G +QSG   F        ++++   ++D    +++
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDENIIAEVKRDFLRSVSR 616


>gi|224069623|ref|XP_002303013.1| predicted protein [Populus trichocarpa]
 gi|222844739|gb|EEE82286.1| predicted protein [Populus trichocarpa]
          Length = 939

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 144/491 (29%), Positives = 238/491 (48%), Gaps = 52/491 (10%)

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255
           + + P+  +    +        +E      +      ++      L   KQ +     P 
Sbjct: 194 RYNLPNDTKKPRTLSKLSDNGAWERRKTKGKVAIQKMVVDLMELYLHRLKQRR-----PP 248

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKTLVALIAM 314
             +           P+ PT  Q+ A  D+++D+  ++  M R++ GDVG GKT VAL A+
Sbjct: 249 YPKTPAMVDFSAQFPYEPTPDQKQAFIDVMRDLTERETPMDRLICGDVGFGKTEVALRAI 308

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFI-KKYTQNTQIIVEIITGNM------PQAHRRKA 367
              V AG QA+++AP  +LA+QH++ I +++++   I V +++          +A +   
Sbjct: 309 FCVVSAGKQAMVLAPTIVLARQHFDVISERFSKYPHIKVALLSRFQAYLLLQSKAEKEMY 368

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH----------------------- 404
           LE   HG   II+GTH+L    + Y  L L++VDE+                        
Sbjct: 369 LEMTKHGHLDIIVGTHSLLGSRVVYNNLGLLVVDEEQTTNKRKGKGNFSINHDFANEKEK 428

Query: 405 ----RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
               RFGV+Q+ K+    T+  VL +TATPIPRTL L   G  D S I+  P  R PIKT
Sbjct: 429 KESRRFGVKQKEKIASFKTSVDVLTLTATPIPRTLYLALTGFRDASLISTPPPERVPIKT 488

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR-----SVVERFNSLHEHFT 515
            +   ++ + +I  +K  L  G + +++ P+I+  +E         S VE   +  +H T
Sbjct: 489 HLSAYSK-ERLISAIKYELDRGGQVFYVLPRIKGLEEVKDFLEQSFSNVEIAVAHGQHVT 547

Query: 516 SS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
               + +  +      E  M+ F  G  K+LI T ++E G+D+ +A+ III++ + FGLA
Sbjct: 548 KKGNSFLLVKQYSKLLEDTMEQFAQGEIKILICTNIVESGLDIQNANTIIIQDVQLFGLA 607

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QL+QLRGRVGR ++ +   L Y     L+  +  RL+ L+  ++   GF +AE D+  R 
Sbjct: 608 QLYQLRGRVGRADKEAHAHLFYPDKSMLTDQALERLAALEECQELGRGFQLAERDMGIRG 667

Query: 630 EGEILGIKQSG 640
            G I G +Q+G
Sbjct: 668 FGTIFGEQQTG 678


>gi|152991099|ref|YP_001356821.1| ATP-dependent DNA helicase RecG [Nitratiruptor sp. SB155-2]
 gi|151422960|dbj|BAF70464.1| ATP-dependent DNA recombinase RecG [Nitratiruptor sp. SB155-2]
          Length = 597

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 175/644 (27%), Positives = 284/644 (44%), Gaps = 61/644 (9%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++   G  +   F     Y P S+ D      +  + +   VTI      HS  +  K 
Sbjct: 6   ERLRKVGIYDAISFA---LYAPFSYRDYR----LENLFD---VTI------HSWHKHPKF 49

Query: 88  RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN 147
                  ++   +I L+FF+  T   K +F  G ++ + GK +K   ++ ++ P  +   
Sbjct: 50  VKMIAYAHNRNQDIELIFFHT-TSYHKQMFQSGNRLYIEGKAQKNYGKLQIIQPKKV--- 105

Query: 148 SQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFN 207
             +     I   Y +   +  D+F+K+  + L++  +L E + +++++        +   
Sbjct: 106 -ANYKIGRIFPQYRI--AIRGDIFEKLKEKYLTKENLLAEGLPEEIVKHLLKIHYPDPLF 162

Query: 208 IIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
                   ++   T    + L Y E  +    L   R   K       + E       L 
Sbjct: 163 YE---AWKQEGAITGKYLDALKYAESFSYMKNLRQKRVYQKSIAQYAQDPE-----PFLS 214

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIM 327
            +PF PT  Q+ AI DI +D+ +     R++ GDVGSGK+LV             + ++M
Sbjct: 215 TLPFDPTSDQKRAIYDIYEDLKKGVAARRVIVGDVGSGKSLVMFATAFMNYPN--KTILM 272

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP  ILA Q Y   KK+  N   I  + + N           +     AH  IGTHAL  
Sbjct: 273 APTTILADQLYHEAKKFLPNEMNIALVTSTN-----------KDFDHNAHFFIGTHALLY 321

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDI 443
             +    +++  VDEQHRFG  QR  L +        PH    +ATPIPRT  +     +
Sbjct: 322 TDLPKASVVM--VDEQHRFGTNQRNLLKKMVECNKGSPHFFQFSATPIPRTKAMMQSALV 379

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           D S I E P  +K I T +I  +   E+++ +K  + +  +   + P +EE ++  ++S+
Sbjct: 380 DYSLIKEMPF-QKKIITKVISRDSFKELLKHIKSEVEKRHQVLVVYPLVEESEKYGYKSL 438

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            E  +    +F     +      D +KE V+  F+     +L+ATTVIEVGI +   S I
Sbjct: 439 QEAKDFWMRYFD---GVYVTHGKDKEKEEVLKEFRENG-NILLATTVIEVGISLPRLSTI 494

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +I  AE+ GLA LHQLRGRV R      C L  +   +     RL    +  +GF IAE 
Sbjct: 495 VIVGAENLGLATLHQLRGRVSRTGLKGYCFLYTNDAKN----ERLQKFASITNGFEIAEL 550

Query: 624 DLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           DL  RK G+I+ G +QSG   F      L  +++E A+K  + +
Sbjct: 551 DLMYRKSGDIIHGREQSG-KTFKWLHMALDKAIVEEAKKRLEEL 593


>gi|269118729|ref|YP_003306906.1| DEAD/DEAH box helicase [Sebaldella termitidis ATCC 33386]
 gi|268612607|gb|ACZ06975.1| DEAD/DEAH box helicase domain protein [Sebaldella termitidis ATCC
           33386]
          Length = 984

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 130/382 (34%), Positives = 200/382 (52%), Gaps = 16/382 (4%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q+ AI+D+  DM     M R++ GDVG GKT VA+ A   A+  G Q  ++ P  ILA+
Sbjct: 470 DQKRAIEDVKNDMESDKIMDRVICGDVGYGKTEVAMRAAFKAIVDGKQVALLTPTTILAE 529

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           QHYE  K+      + +E ++        R+ L ++  G   ++IGTH +  + +++  L
Sbjct: 530 QHYERFKQRFSKYPMTIENLSRLSDTKKVREILHKLETGVLDMVIGTHRILSEDVKFKNL 589

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
            L+I+DE+ +FGV+ + KL +K     +L +TATPIPRTL LT LG  DIS I   P  R
Sbjct: 590 NLLIIDEEQKFGVKSKEKLKKKREKIDILTLTATPIPRTLNLTLLGIRDISVIETPPVNR 649

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
            PI+T+I    +  ++   +   L+   + ++I   +        + + ++   L     
Sbjct: 650 VPIETII--EEQGLDIKRAVLKELARDGQIFYIYNNV--------KFMEDKMKELKSQLP 699

Query: 516 S--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               I  IHG++     +  +  F+NG   +L+ATT+IE GID+ + + I IEN +  GL
Sbjct: 700 EFVKIDYIHGQLPPKLIKERIKKFENGEYDILMATTIIENGIDISNVNTIFIENFDKLGL 759

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED----GFLIAEEDLKQRK 629
           +Q++QLRGRVGR    S C L+     +K S  R     N ED    G  ++ EDLK R 
Sbjct: 760 SQVYQLRGRVGRSNRQSYCYLIKSLISTKKSKKREETFDNIEDATASGMQLSLEDLKIRG 819

Query: 630 EGEILGIKQSGMPKFLIAQPEL 651
            GEILG KQ G  +       +
Sbjct: 820 AGEILGEKQHGTIETFGYDLYV 841


>gi|160883180|ref|ZP_02064183.1| hypothetical protein BACOVA_01149 [Bacteroides ovatus ATCC 8483]
 gi|156111405|gb|EDO13150.1| hypothetical protein BACOVA_01149 [Bacteroides ovatus ATCC 8483]
          Length = 382

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 104/384 (27%), Positives = 175/384 (45%), Gaps = 19/384 (4%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L    +    GVG + +  L+K +           DL++Y P  +IDR     I EI
Sbjct: 1   MFDLATRDIKFISGVGPQKAAVLNKELE-----IYSLHDLIYYFPYKYIDRSRIYYIHEI 55

Query: 65  SEER-IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
                 + + G I    +    ++R      +DGTG + L++F +  + +   +    + 
Sbjct: 56  DGNMPYIQLKGEILGFETIGEGRQRRLTAHFSDGTGVVDLVWF-QGIKYILGKYKLHEEY 114

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTG-----LSVDLFKKIIVEA 178
            + GK      RI + HP     +   ++   ++  YS         L+    +K++   
Sbjct: 115 IIFGKPTVFNGRINVAHPDVDKPDDLKLSSVGLQPYYSTTEKMKRSFLNSHAIEKMMATV 174

Query: 179 LSRL-PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + ++   LPE +   LL +     + EA   IH P      +    A+ RL ++EL   Q
Sbjct: 175 IQQIQEPLPETLSPKLLTEHHLMPLTEALWNIHFPTNP---DVLRRAQYRLKFEELFYVQ 231

Query: 238 IALL-LMRKQFKKEIGIPINVEGKIAQKIL-RNIPFSPTKSQESAIKDILQDMSQKNRML 295
           + +L   + + K+  G      G +      +N+PF  T +Q+  +K+I  D+    +M 
Sbjct: 232 LNILRYAKDRQKRYRGYIFEKVGDVFNTFYTKNLPFQLTGAQKRVLKEIRNDVGSGRQMN 291

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+LQGDVGSGKTLVAL++M  A++ G QA +MAP  ILA QHYE IK+      I VE++
Sbjct: 292 RLLQGDVGSGKTLVALMSMLLALDNGYQACMMAPTEILANQHYETIKELLFGMDIRVELL 351

Query: 356 TGNMPQAHRRKALERIAHGQAHII 379
           TG++     +  L  +  G    I
Sbjct: 352 TGSIKGKGEKTILTGLLTGVCEDI 375


>gi|154175141|ref|YP_001408519.1| transcription-repair coupling factor [Campylobacter curvus 525.92]
 gi|112803058|gb|EAU00402.1| transcription-repair coupling factor [Campylobacter curvus 525.92]
          Length = 981

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 129/480 (26%), Positives = 231/480 (48%), Gaps = 25/480 (5%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +    ++L      ++ M  + +   G  I        K ++N  F  T  Q+ A+++I+
Sbjct: 422 KEKVREKLFVIASKIVAMAAKRELIAGKVIEKNDLEYLKFVQNAGFDYTTDQQKAVEEIM 481

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D+     M R+L GDVG GKT VA+ A+ A V++G  A+   P  +L+ QHY+ +K+  
Sbjct: 482 SDLKSTRVMDRLLSGDVGFGKTEVAMNAIFACVKSGFSALFFVPTTLLSAQHYKSLKERF 541

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
            +  + +  +        +   L+ +   +  + +GTHAL    ++   + L+++DE+H+
Sbjct: 542 ADFGVKIFRLDRFTSAKEKSAMLKVLKDNEPCVCVGTHALL--GVKANNVGLIVIDEEHK 599

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+Q+ +L + +   H+L M+ATPIPR+L +        S +   P+ R  ++T +   
Sbjct: 600 FGVKQKEQLKEVSANSHILSMSATPIPRSLNMALSKIKSYSVLATAPSSRLDVRTSVREW 659

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524
           +    V E L   +  G +A++I   I + +        +   +L +      I ++H +
Sbjct: 660 DE-KVVKEALMREMRRGGQAFYIHNHIADIE--------QTAQNLRKILPKIRILVLHSK 710

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           ++    E  M  F+ G   +L+ T+++E GI + +A+ IIIENA  FG+A LHQLRGRVG
Sbjct: 711 INAKTTEDEMMKFERGEYDVLLCTSIVESGIHLPNANTIIIENANKFGMADLHQLRGRVG 770

Query: 585 RGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQS 639
           R ++ + C  L      L  ++  RL  L++      G L+A  DL+ R  G I+G  QS
Sbjct: 771 RSDKQAYCYFLVEDKDALGGDALKRLLALESNSFLGSGSLLAYHDLEIRGGGNIVGEAQS 830

Query: 640 GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ---YNEAFQF 696
           G  + +     L   +LE    +   +L  D          + I  +L Q     +  + 
Sbjct: 831 GHIEAIGYSLYL--KMLE---DEINKLLNNDSAKLDKIDLKLSINAFLNQDFIREDRLRL 885


>gi|255071025|ref|XP_002507594.1| predicted protein [Micromonas sp. RCC299]
 gi|226522869|gb|ACO68852.1| predicted protein [Micromonas sp. RCC299]
          Length = 570

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 135/434 (31%), Positives = 227/434 (52%), Gaps = 19/434 (4%)

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQ 286
           R     L+ GQ+++ L R Q  ++   P + +  I Q+     P   T  Q  A++D  +
Sbjct: 109 RKHIRHLVMGQMSIYLQRLQSVRKPYCPPSED--IYQRFNELFPHDLTPDQALAVQDCYE 166

Query: 287 DM-SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
           D+  +   M RI+ GDVG GKT VA+ A+      GGQ  ++AP  +LA+QH   +    
Sbjct: 167 DLTERDTPMDRIIVGDVGFGKTEVAMRAVFRVFSGGGQIFVLAPTTVLAKQHAATMTARL 226

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ-DSIQYYKLILVIVDEQH 404
           +     ++++T N+ +A ++  +ER   G+ H+++GTH+L    S  Y  L L+++DE+ 
Sbjct: 227 RPFGASIDLMTRNVKEAEKKDIIERWLAGRIHVLVGTHSLLNLPSTMYDPLNLLVIDEEQ 286

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           RFGV+ + K++   ++  VL ++ATPIPRTL +   G  D S +T  P  R+PI T +  
Sbjct: 287 RFGVKHKDKISSLKSSVDVLTLSATPIPRTLHMAMAGFRDASLVTTPPPERRPIITRLQV 346

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI-IHG 523
             +   V + ++  L  G + +++ P+I+    +  R        L E F   I + +HG
Sbjct: 347 YEQ-SVVHQAIQYELGRGGQIFYVVPRIQMMNAAKKR--------LKEIFQDIIILEVHG 397

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           +M     +  MD F +G   +L+ TT++E G+D+ + + II+E  + FGLA L+QLRGRV
Sbjct: 398 QMKGEYLDHAMDEFASGRAHILLCTTIVESGLDIPNVNTIIVEEVQQFGLASLYQLRGRV 457

Query: 584 GRGEEISSCILLYHPP--LSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEILGIKQ 638
           GR    +   + +     +  ++  RL  L+      +GF +AE D+  R  G + G KQ
Sbjct: 458 GRAGRQAYAYMFHAERGGMHNDAQERLLALEECCGLGEGFRLAERDMAIRGVGTLFGEKQ 517

Query: 639 SGMPKFLIAQPELH 652
           SG    + A   L 
Sbjct: 518 SGEMDSIGADLYLE 531


>gi|257893211|ref|ZP_05672864.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,408]
 gi|257829590|gb|EEV56197.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,408]
          Length = 374

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/391 (26%), Positives = 181/391 (46%), Gaps = 22/391 (5%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           +  L  P++   GVG+K +  L+ +            DLL Y+P  + D   R  ++EI 
Sbjct: 1   MRSLDDPITMLAGVGEKRAASLASL------GIQTIEDLLTYYPFRYEDIQER-NLNEIQ 53

Query: 66  EERIVTITGYISQHSSFQL--QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKI 123
           ++  VT+ G +           K+   +  +        + FF +    LK       +I
Sbjct: 54  DQEKVTLKGIVVSPPVMNRFGYKKSRLQFRMMQEHDVFNVSFFNQ--PYLKEKVILSEEI 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP 183
            V GK    +  +  +    I  +    +F     +Y +   +       +I +      
Sbjct: 112 AVYGKWDAKRKALNGMK---ILGSQTMDDFS---PIYHVNKSIRQTTLVDLIKKGFQEYG 165

Query: 184 VL-PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALL- 241
            L  E +  +L++K      A A   +H P   K+ E    A+ R+ ++E    Q+ L  
Sbjct: 166 TLIEENLPNNLVEKYRLLDRASAVRSMHFP---KNHEENHQAKRRVVFEEFFLFQMRLQG 222

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L + +  +  G+ I  + +  ++  + +PF  T +Q+    +I +D+     M R+LQGD
Sbjct: 223 LKKAEKAETNGLEILYDVQKLKEFTQKLPFELTNAQKRVTNEICRDLRSPQHMQRLLQGD 282

Query: 302 VGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           VGSGKT+VA IA+ A V AG Q  +M P  ILAQQH E +++     ++ V ++TG+   
Sbjct: 283 VGSGKTVVAAIALYATVTAGFQGALMVPTEILAQQHMESLQQLFDPNEVTVALLTGSTKT 342

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
             RR+ LE++  G+ +++IGTHAL QD +++
Sbjct: 343 KERRELLEKLERGEINVVIGTHALIQDGVEF 373


>gi|296272208|ref|YP_003654839.1| transcription-repair coupling factor [Arcobacter nitrofigilis DSM
           7299]
 gi|296096383|gb|ADG92333.1| transcription-repair coupling factor [Arcobacter nitrofigilis DSM
           7299]
          Length = 989

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 229/467 (49%), Gaps = 24/467 (5%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +    D L A    ++ +    +   GI IN + KI +    +  F  TK Q+ +I ++ 
Sbjct: 433 KDKVKDRLFAIANDIIKLAAARELVNGIKINCDKKILKDFSTSAGFDYTKDQKRSINELF 492

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D+S    M R+L GDVG GKT VA+ A+ A +  G QA+ + P  +LA QH+  +KK  
Sbjct: 493 DDLSSGKVMDRLLSGDVGFGKTEVAMNALLAVILDGHQALFVCPTTLLASQHFHSMKKRF 552

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
               I +  + G      +    + +  G   +++GTH+L    I+   L LVI+DE+H+
Sbjct: 553 DEYGIRMAQLDGKTTAKEKTYVKKALESGDIDLVVGTHSLL--DIKTKDLALVIIDEEHK 610

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+Q+ KL +     H+  M+ATPIPRTL L       +S +   P  R  ++T +   
Sbjct: 611 FGVKQKEKLKELREDVHIFSMSATPIPRTLNLALSKLKGMSSLLTPPTERLGVRTYVKEF 670

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
                + E +      G + +++   I   +        ++ +         I +IH ++
Sbjct: 671 EE-KLIKEIVLREKRRGGQLFYVHNNIASMEA-------KKADIQEILPNIKIEMIHSKI 722

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           + +  E +++ F +G   +L+AT+++E G+ + +A+ +II+ A+ FG+A LHQLRGRVGR
Sbjct: 723 TQVKAEKLIEDFNDGKFDILLATSIVESGLHLPNANSMIIDGADRFGIADLHQLRGRVGR 782

Query: 586 GEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSG 640
           G +   C  +      ++ ++  RL  L++      G  +A +DL+ R  G I+G  QSG
Sbjct: 783 GHKEGFCYFIVEDKKKITSDAIKRLLALESNSYLGSGTALAHQDLEIRGGGNIIGEAQSG 842

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
             K +     L   +LE    D   IL+ +   +    Q + I L +
Sbjct: 843 HIKQIGYGLYL--KMLE----DTLAILSGE---SKEESQVVDIKLAI 880


>gi|317178226|dbj|BAJ56015.1| DNA recombinase [Helicobacter pylori F16]
          Length = 621

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 174/643 (27%), Positives = 283/643 (44%), Gaps = 63/643 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +               +   I    ++          +R YK      
Sbjct: 20  LLVYMPKGYKDLNLLKHF---ELGLSGVLEVDILDKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    N F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFN-YSAFHHNQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLISL-ENLKKEGIKENIAHLLLEIFF--PTPHFV 172

Query: 216 KDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE    + S     L Y E+L       L RK+ +    I      +  +  + ++PF
Sbjct: 173 KDFETHKNFPSQYLNALKYIEMLFYMKN--LERKKLQFSAKIACPNNSERLKAFITSLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 KLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E I     H++IGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSYKKRSNHLFETI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F   +    G+  +  KE V++ F+  +  +L+ATT+IEVGI +   S+++I  
Sbjct: 463 SFWQKRF-KKVYTTSGQDKN--KEEVIEEFRE-SGSILLATTLIEVGISLPRLSVMVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           RK G++L G +QSG   F        ++++   ++D    ++ 
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDENIIAEVKRDFLRSVSH 616


>gi|307720513|ref|YP_003891653.1| transcription-repair coupling factor [Sulfurimonas autotrophica DSM
           16294]
 gi|306978606|gb|ADN08641.1| transcription-repair coupling factor [Sulfurimonas autotrophica DSM
           16294]
          Length = 997

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 126/446 (28%), Positives = 224/446 (50%), Gaps = 22/446 (4%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
           +  R+RL   E+    +     R   K      I++  K  Q+      F  T+ Q  A+
Sbjct: 436 AKVRKRL--LEIAGQIVNTAAARALIKA---PKISLGKKELQEFQALSGFEYTEDQTQAV 490

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +IL  MS  + M R+L GDVG GKT +AL  + AA ++G Q+  + P  +L+ QH+  +
Sbjct: 491 NEILNQMSSGHIMDRLLSGDVGFGKTEIALNTIYAACQSGYQSAFIVPTTLLSAQHWRSL 550

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            +  ++  I    +   +    +   ++ +A G+   ++GTH LF   +++ KL +VI+D
Sbjct: 551 DERFKDLGIRYAKMDRFVSTKDKNAIIKGLASGEIDCVVGTHTLF--GLEFKKLGVVIID 608

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+H+FGV+Q+ K+ +     H+L M+ATPIPR+L         +S++   P+ R+ ++T 
Sbjct: 609 EEHKFGVKQKEKIKELYHNVHLLSMSATPIPRSLNQALSSIKTMSQLLTPPSERQGVRTF 668

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           +   +    + E +   L  G + +++   I+          ++   +L       + ++
Sbjct: 669 VKEYDE-KLIKEVILRELRRGGQVFYVHNSIDHMP-----IKLDELQALLPDL--RMLML 720

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           H ++S ++ E  +  F+ G   L+IAT++IE GI +   + II++ A+ FG+A LHQLRG
Sbjct: 721 HSKISAVETEKELLKFEAGEYDLMIATSIIESGIHMPRVNTIIVDGADRFGIADLHQLRG 780

Query: 582 RVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGI 636
           RVGRG        +      L+  +  RL  L++      G ++A  DL+ R  G ++G 
Sbjct: 781 RVGRGHSEGFAYFIVQNKENLTDEAKKRLLALESNSFLGSGSVLAHHDLEIRGGGNLVGD 840

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKD 662
            QSG  K +     L   +LE A K+
Sbjct: 841 AQSGHIKNIGYSLYL--RMLEDAIKE 864


>gi|219128770|ref|XP_002184578.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404028|gb|EEC43977.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 942

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 139/457 (30%), Positives = 228/457 (49%), Gaps = 23/457 (5%)

Query: 223 PARERLAYDELLAGQIAL--LLMRKQFKKEIGIPINVEGKIA-QKILRNIPFSPTKSQES 279
              +     E    Q+A   L +    +     P +   +   Q+  ++  + PT  Q+ 
Sbjct: 219 AWSKAKQKVEENTLQLAQDVLALYATRETLQRQPFDPSVEDVVQEFSKSFLYEPTTDQKK 278

Query: 280 AIKDILQDM-SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
             ++I  DM  +   M R++ GDVG GKT VA+ A+  ++  G QA ++AP G+LA QHY
Sbjct: 279 CFEEIENDMVWRSRPMDRLICGDVGFGKTEVAIRALFRSIINGRQAALLAPTGVLAAQHY 338

Query: 339 EFIKKYTQN---TQIIVEIITGNMPQ--AHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           + I K         I + ++ G M +     R+    I  G+  +I+GTHAL  + +++ 
Sbjct: 339 KNIVKRMGPGTEYNINIALLRGGMGKQTKAGRELRGEIEGGKTQLIVGTHALLSNEMKFK 398

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
            L L++VDE+ RFGV+Q+ +L        VL ++ATPIPRTL ++  G  D S I   P 
Sbjct: 399 NLGLLVVDEEQRFGVKQKERLKLICDGIDVLTLSATPIPRTLQMSLSGIRDTSTIRSPPP 458

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            RKP  T +   +  D V   +   L+ G + Y++ P+I    E+      +   SL   
Sbjct: 459 MRKPTVTHVQDFSE-DIVKTAISTELARGGQCYYVVPRISMLDEAE-----QTIQSLFPG 512

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               I   HGRM     E  +  F  G   +L+ATTVIE G+D+   + I+++N++ FG+
Sbjct: 513 I--RIIQAHGRMQRNGAEENVAEFAEGNYDVLLATTVIENGVDIPSVNTIVVQNSQAFGM 570

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTRLSV---LKNTEDGFLIAEEDLKQRK 629
           + L+QLRGRVGR ++ +    LY    +++ +  RL     L     GF +A  DL+ R 
Sbjct: 571 STLYQLRGRVGRSDKQAFAYFLYREESITEQAAMRLQAIGELSELGSGFDVANRDLEIRG 630

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            G +LG +QSGM        +L+  +L+ + +  + +
Sbjct: 631 AGSLLGTEQSGMA--AKVGFDLYMRMLKKSIRKLRGL 665


>gi|317182726|dbj|BAJ60510.1| DNA recombinase [Helicobacter pylori F57]
          Length = 621

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 174/643 (27%), Positives = 283/643 (44%), Gaps = 63/643 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +               +   I    ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLKHF---ELGLSGVLEVDILDKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    N F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFN-YSAFHYNQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLISL-ENLKKEGIKENIAHLLLEIFF--PTPHFV 172

Query: 216 KDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE    ++S     L Y E+L       L RK+ +    I      +  +  + ++PF
Sbjct: 173 KDFETYKNFSSQHLNALKYIEMLFYMKN--LERKKLQFSAKIACPNNSERLKAFITSLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 KLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E I     H++IGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSYKKRSNHLFETI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F   +    G+  +  KE V++ F+     +L+ATT+IEVGI +   S+++I  
Sbjct: 463 SFWQKRF-KKVYTTSGQDKN--KEEVIEEFREFGS-ILLATTLIEVGISLPRLSVMVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           RK G++L G +QSG   F        ++++   ++D    ++ 
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDENIIAEVKQDFLRSVSH 616


>gi|305431881|ref|ZP_07401048.1| transcription-repair coupling factor [Campylobacter coli JV20]
 gi|304444965|gb|EFM37611.1| transcription-repair coupling factor [Campylobacter coli JV20]
          Length = 978

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 139/459 (30%), Positives = 230/459 (50%), Gaps = 21/459 (4%)

Query: 225 RERLAYDELLAG-QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           +ERL    L    +I ++  ++   K   I I+         +    FS T+ Q  A ++
Sbjct: 421 KERLKTKLLAIASEIVIMAAKRALIKPKEIKIDYAD--QAYFVSKAGFSYTQDQNKACEE 478

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           IL D      M R+L GDVG GKT VA+ A+   V++G  A   AP  +L+ QHY+ +KK
Sbjct: 479 ILNDFENGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFFFAPTTLLSHQHYKSLKK 538

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
             +   I V  +        ++  +  +   +A ++IGTHAL    ++   L LVI+DE+
Sbjct: 539 RFEPFGIEVFKLDRFTSTKEKKTLMLNLEQNKACVVIGTHALLN--VECENLALVIIDEE 596

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           H+FGV+Q+ KL +     H+L M+ATPIPR+L          S +   P  R  ++T + 
Sbjct: 597 HKFGVKQKEKLKELTQNSHLLSMSATPIPRSLNQALSSIKSYSVLQTPPEDRLDVRTFV- 655

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             N    + E +   L  G + ++I   I   ++   + +++ F +L       I I+H 
Sbjct: 656 KENDDALLKEAITRELRRGGQIFYIHNHIASIEQCK-KHLLDLFKNL------RILILHS 708

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           ++    +E  M  F+N    LL++T+++E GID+ +A+ +I+E ++ FG+A LHQLRGRV
Sbjct: 709 KIDAKIQEEEMLKFENKEYDLLLSTSIVESGIDLPNANTMIVERSDRFGMADLHQLRGRV 768

Query: 584 GRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQ 638
           GR +    C  L      L++++  RL  L++      G ++A  DL+ R  G +LGI Q
Sbjct: 769 GRSDRQGYCYFLVENKEELTQDALKRLVSLESNSYLGAGSVLAYHDLEIRGGGNLLGIDQ 828

Query: 639 SGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           SG  +     +    L D L  + +K++      D  LT
Sbjct: 829 SGHIEQIGLSLYLKMLEDELNALTKKESFEEKKIDLKLT 867


>gi|160883181|ref|ZP_02064184.1| hypothetical protein BACOVA_01150 [Bacteroides ovatus ATCC 8483]
 gi|156111406|gb|EDO13151.1| hypothetical protein BACOVA_01150 [Bacteroides ovatus ATCC 8483]
          Length = 327

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 133/307 (43%), Positives = 198/307 (64%), Gaps = 3/307 (0%)

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-QKATAPHVLLMTATPIPRTLV 436
           I+IGTHA+ +D++ +  L  V++DEQHRFGV QR +L  +    PHVL+MTATPIPRTL 
Sbjct: 3   ILIGTHAVIEDTVNFSSLGFVVIDEQHRFGVAQRARLWSKNVQPPHVLVMTATPIPRTLA 62

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +T  GD+D+S I E P GRKPI T+    NR + +   ++  + EG++ Y + P I+E +
Sbjct: 63  MTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYRSVRKQIDEGRQVYIVYPLIKESE 122

Query: 497 ESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           + + +++ E +  + E F    +  +HG+M   +K+  M  F +G  ++++ATTVIEVG+
Sbjct: 123 KIDLKNLEEGYQHILEEFPKCTVCKVHGKMKPAEKDEQMQLFVSGKAQIMVATTVIEVGV 182

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +V +AS++IIENAE FGL+QLHQLRGRVGRG E S CIL+ +  L++++  RL ++  T 
Sbjct: 183 NVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVTNYKLTEDTRKRLEIMVRTN 242

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           DGF IAE DLK R  G++ G +QSG+     IA       LL+  R  A+ I+ QDP   
Sbjct: 243 DGFEIAEADLKLRGPGDLEGTQQSGIAFDLKIADIVRDGQLLQYVRAIAESIVEQDPAAQ 302

Query: 675 SVRGQSI 681
           S   + +
Sbjct: 303 SPENEIL 309


>gi|152993498|ref|YP_001359219.1| ATP-dependent DNA helicase RecG [Sulfurovum sp. NBC37-1]
 gi|151425359|dbj|BAF72862.1| ATP-dependent DNA recombinase RecG [Sulfurovum sp. NBC37-1]
          Length = 602

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 169/646 (26%), Positives = 283/646 (43%), Gaps = 67/646 (10%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
               K+           +DL    P+S+ D         +   +I T+   +++ S +  
Sbjct: 6   QLFKKLK------IYSLLDLALIVPTSYNDTTLSTT---LEIGKIHTLEAKVTESSIYGG 56

Query: 85  QKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
           + R  + +     +G      F+R T     +F  G    + G++++ K  + M  P  I
Sbjct: 57  KLRVGFLLT---QSGRRLSSTFFRVTPYHHKLFGVGSTHYIQGRLEEYKGYLQMPQPKSI 113

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAE 204
                      I   Y     L       ++   ++   +  E ++   +          
Sbjct: 114 ------KQVGKITPKYKSV--LKESEIASLMEVYITEQNLFNEGLDSKEVA--------- 156

Query: 205 AFNIIHNPRKAKDFEWTSPAR----ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260
               +H P+   +       +    E L + E         L + + K+     +     
Sbjct: 157 TLMRVHFPKSLDEVYENGGYKSEIIEVLKFVEAYNH-----LRKLRGKRVDFPALRALNG 211

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML-RILQGDVGSGKTLVALIAMAAAVE 319
             +  + N+PF+ T+ Q++ I  I +D++++++   R++ GDVGSGKT+V L ++  A+ 
Sbjct: 212 EMEPFVSNLPFTLTEEQQNVIVQIRKDLAREDKAAKRMIVGDVGSGKTMVILASVMMALP 271

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              ++++MAP  +LA Q YE   K+   +  I  ++ G     +R          +A  I
Sbjct: 272 --HKSILMAPTSLLALQLYEEACKHLPKSVRIALVMQGKDEGNYR----------EADFI 319

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KATAPHVLLMTATPIPRTL 435
           IGTHAL        +  LV+VDEQHRFG +QR  L          PH L  +ATPIPRT 
Sbjct: 320 IGTHALLFKE-DLPEASLVMVDEQHRFGTKQRQSLEALVSSGERKPHYLQFSATPIPRTQ 378

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +     +D+S IT  P  R+ + T  I      +++  +K  +++  +   I P +EE 
Sbjct: 379 AMMESELLDVSLITTTPFERE-VLTQTIGREDFPDLMTHIKEEIAQQHQVLIIYPLVEES 437

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E  ++S+ E        F  ++ + HG+     KE V+  F+     +L+ATTV+EVGI
Sbjct: 438 SEVPYQSLDESRGFWESRF-DNVYVTHGKDKQ--KEDVLLEFRE-KGNILLATTVVEVGI 493

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
            +   ++I+I  AE  GLA LHQLRGRVGR    S C L  +   +     RL     T 
Sbjct: 494 SLPKLTLIVIVGAERLGLATLHQLRGRVGRNGLKSWCYLFSNSKENF----RLQQFAQTT 549

Query: 616 DGFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIAR 660
           +GF IA+ DLK R  G+IL G  QSG  +F        D ++E A+
Sbjct: 550 NGFDIAKLDLKFRDSGDILDGTIQSGQ-RFKWLDMAEDDKIVEQAK 594


>gi|257460753|ref|ZP_05625854.1| transcription-repair-coupling factor [Campylobacter gracilis
           RM3268]
 gi|257442084|gb|EEV17226.1| transcription-repair-coupling factor [Campylobacter gracilis
           RM3268]
          Length = 986

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 135/479 (28%), Positives = 232/479 (48%), Gaps = 24/479 (5%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
           S  +ER+           + L   + +   G+ I  E     K L    FS T  Q+ A+
Sbjct: 420 SKIKERVREKLFAIASNIIALA-AKRELVRGLVIKNESADYAKFLSASGFSYTSDQQKAV 478

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
             IL D+     M R+L GDVG GKT VA+ A+ A + +G   +   P  +L+ QHY  +
Sbjct: 479 GAILADLQSGKVMDRLLSGDVGFGKTEVAMNAIFACIRSGHSVLFFVPTTLLSSQHYATL 538

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
            +  +  +I V  +        + + L+R+  G+A +++GTH+L    +    L L+I+D
Sbjct: 539 SERFREFEIPVFKLDRFSSARQKSEILKRLQSGEAIVVVGTHSLLN--LNPANLGLIIID 596

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+H+FGV+Q+ +L +K+ A H+L M+ATPIPR+L +        S +   P  R  ++T 
Sbjct: 597 EEHKFGVKQKERLKEKSAASHLLSMSATPIPRSLNMALSSIKSYSTLLSPPQDRLDVRTF 656

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           +   +    V E +   L  G + +++   I   + +  +        L    +  I I+
Sbjct: 657 VKQWDE-KIVKEAISRELRRGGQIFYVHNHIATMQSAKKKL-------LEILPSLKILIL 708

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           H ++     E  +  F  G   LL+ T+++E GI +   + II+ENA+ FG+A LHQLRG
Sbjct: 709 HSKIDAKTTEDEILKFVAGGYDLLLCTSIVESGIHMPRVNTIIVENADKFGIADLHQLRG 768

Query: 582 RVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGI 636
           RVGR  +   C  L      L++++  RL  L++      G ++A  DL+ R  G +LG 
Sbjct: 769 RVGRSNKQGFCYFLIEDKTALTQDALKRLVALESNSFLGSGSVLAYHDLEIRGGGNLLGE 828

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
            QSG  + +     L   +LE   ++   +L++     SV    ++I +  +  +E  +
Sbjct: 829 AQSGHIEAIGYSLYL--KMLE---EEIGKLLSRKSAAASVE---LKISVNAFLNSEFIR 879


>gi|317179704|dbj|BAJ57492.1| DNA recombinase [Helicobacter pylori F30]
          Length = 621

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 173/643 (26%), Positives = 283/643 (44%), Gaps = 63/643 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +               +   I    ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLKHF---ELGLSGVLEVDILDKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    N F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFN-YSAFHHNQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLISL-ENLKKEGIKENIARLLLEIFF--PTPHFV 172

Query: 216 KDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE    ++S     L Y E+L       L RK+ +    I      +  +  + ++PF
Sbjct: 173 KDFETHKNFSSQHLNALKYIEMLFYMKN--LERKKLQFSAKIACPNNSERLKAFIASLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 QLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E I     H++IGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSYKKRSNHLFETI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F   +    G+  +  KE V++ F+     +L+ATT+IEVGI +   S++++  
Sbjct: 463 SFWQKRF-KKVYTTSGQDKN--KEEVIEEFREFGS-ILLATTLIEVGISLPRLSVMVVLA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           RK G++L G +QSG   F        ++++   ++D    ++ 
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDENIIAEVKRDFLRSVSH 616


>gi|332674307|gb|AEE71124.1| DNA helicase RecG [Helicobacter pylori 83]
          Length = 621

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 175/643 (27%), Positives = 287/643 (44%), Gaps = 63/643 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +               +   I    ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLKHF---ELGLSGVLEVDILDKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    N F  G  + + GK+++       I+  P  +    +     +
Sbjct: 71  --NLELVFFN-YSAFHHNQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISL--I 125

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
            + V S           K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 126 FKKVKS----------HKKIQENLQKLISL-ENLKKEGIKENIAHLLLEIFF--PTPHFV 172

Query: 216 KDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE    ++S     L Y E+L       L  K+ +    I      +  +  + ++PF
Sbjct: 173 KDFETHKNFSSQHLNALKYIEMLFYMKN--LECKKLQFNAKIACPNNSERLKAFITSLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 KLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E I     H++IGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSHKKRSNHLFETI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LDEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F  ++ I  G+  +  KE V++ F+     +L+ATT+IEVGI +   S++++  
Sbjct: 463 SFWQKRF-KNVYITSGQDKN--KEEVIEEFREFGS-ILLATTLIEVGISLPRLSVMVVLA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           RK G++L G +QSG   F        ++++   ++D    ++ 
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDENIIAEVKQDFLRSVSH 616


>gi|261838796|gb|ACX98562.1| ATP-dependent DNA helicase [Helicobacter pylori 51]
          Length = 621

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 173/643 (26%), Positives = 284/643 (44%), Gaps = 63/643 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +               +   I    ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLKHF---ELGLSGVLEVDILDKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    N F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFN-YSAFHYNQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLISL-ENLKKEGIKENIAHLLLEIFF--PTPHFV 172

Query: 216 KDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE    ++S     L Y E+L       L RK+ +    I      +  +  + ++PF
Sbjct: 173 KDFETHKNFSSQHLNALKYIEMLFYMKN--LERKKLQFSAKIACPNNSERLKAFITSLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 KLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E I     H++IGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSHKKRSNHLFETI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASSKSNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   + I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PREIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F   +    G+  +  KE V++ F+     +L+ATT+IEVGI +   S+++I  
Sbjct: 463 SFWQKRF-KKVYTTSGQDKN--KEEVIEEFREFGS-ILLATTLIEVGISLPRLSVMVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           RK G++L G +QSG   F        ++++   ++D    +++
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDENIIAEVKRDFLRSVSR 616


>gi|157414757|ref|YP_001482013.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385721|gb|ABV52036.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747396|gb|ADN90666.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           M1]
 gi|315931095|gb|EFV10069.1| DEAD/DEAH box helicase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 607

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 182/649 (28%), Positives = 288/649 (44%), Gaps = 59/649 (9%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
            F  K+           IDL    P                E  I T    I   SS   
Sbjct: 9   EFFKKLK------IRSAIDLALLLPKKIE---NLNPSKNPKENEICTQKITIKSVSS--- 56

Query: 85  QKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
           +K + + +   +   E I+ +FF+ +      V   G+++    K+ +  +     +P  
Sbjct: 57  RKNQLFGLGFCEEWQENISFVFFHPRA-WHFGVCKVGKELIFNAKLSRFNHTWQFNNPKI 115

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK-SFPSI 202
           +       +F      Y +  GL        I + L+   +    IE   +    +  + 
Sbjct: 116 L------TSFEGFSPKYQIL-GLKDTKIAAFIHKYLNYENLKESGIEDKYIHFLLNLHAY 168

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
            E    +        FE      + L Y E+        L R + K+       +     
Sbjct: 169 DEKSFFM--------FENLQNFSKDLKYIEIYNF-----LKRLKAKQTHFKAHQINVFNI 215

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
              L+++PFS TK Q +A+KDI +D+  K    R++ GDVG GKTLV L A         
Sbjct: 216 ANWLKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYP--K 273

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA++MAP  ILA Q YE  KK+  +    +  I G   +    + ++     +A++IIGT
Sbjct: 274 QAILMAPTSILAYQLYEEAKKFLPDFM-NILFIKGGKKEKDLEQNIQ-----KANLIIGT 327

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTS 439
           HAL    ++ +  +LV++DEQHRFG  QR K   L ++  APH +  +ATPIPRTL +  
Sbjct: 328 HALI--HLESHNAVLVMIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLSMIQ 385

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              ++ S I + P  +K I T  I      ++ E++K  +S+  +   I P +       
Sbjct: 386 SELLNFSFIKQMPF-KKDITTYCIQNEGFSKLSEKIKEEISKNHQIIIIYPLVSASDNIP 444

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           + S +E+     +     + + HG+     K+ +++ F++    +L++TTV+EVGI +  
Sbjct: 445 YLS-LEQAKEYWQSHYEKVFVTHGKDKQ--KDEILERFRD-EGNILLSTTVVEVGISLPR 500

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            S+I+I  AE  GLA LHQLRGRVGR    S+C L           +RL    +T DGF 
Sbjct: 501 LSMIVIVGAERLGLATLHQLRGRVGRVGLKSTCYLYTKLK---EIPSRLKEFASTLDGFK 557

Query: 620 IAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD-AKHI 666
           IAE DLK R  G++L G  Q G  +F        + +LE  +KD AK +
Sbjct: 558 IAELDLKNRLSGDLLDGFMQHGN-EFKFFDFSKDEEILEKVKKDLAKKL 605


>gi|317181205|dbj|BAJ58991.1| DNA recombinase [Helicobacter pylori F32]
          Length = 621

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 173/643 (26%), Positives = 283/643 (44%), Gaps = 63/643 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +               +   I    ++          +R YK      
Sbjct: 20  LLIYTPKGYKDLNLLKHF---ELGLSGVLEVDILDKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    N F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFN-YSAFHYNQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLISL-ENLKKEGIKENIAHLLLEIFF--PTPHFV 172

Query: 216 KDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE    + S     L Y E+L       L RK+ +    I      +  +  + ++PF
Sbjct: 173 KDFETHKNFPSQHLNALKYIEMLFYMKN--LERKKLQFSAKIACPNNSERLKAFITSLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 KLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E I     H++IGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSHKKRSNHLFETI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   + +  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIVKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F   +    G+  +  KE V++ F+  +  +L+ATT+IEVGI +   S++++  
Sbjct: 463 SFWQKRF-KKVYTTSGQDKN--KEEVIEEFRE-SGSILLATTLIEVGISLPRLSVMVVLA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           RK G++L G +QSG   F        ++++   ++D    +++
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDENIIAEVKRDFLRSVSR 616


>gi|157415346|ref|YP_001482602.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157386310|gb|ABV52625.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747987|gb|ADN91257.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni M1]
          Length = 978

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 132/420 (31%), Positives = 220/420 (52%), Gaps = 18/420 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            I V+       + +  F  T  QE A  +ILQD      M R+L GDVG GKT VA+ A
Sbjct: 449 KITVDLSRQADFITSAGFIYTSDQEKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA 508

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +   V++G  A + AP  +L+ QHY+ +KK      I V  +      A +++ L+ +  
Sbjct: 509 IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNLKE 568

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            +A +++GTHAL    ++   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR
Sbjct: 569 NKACVVVGTHALLS--VECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPR 626

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +L          S +   P  R  ++T +   N    + E +   L  G + ++I   I 
Sbjct: 627 SLNQALSSIKSYSVLQTPPEDRMDVRTFV-KENDDALLKEAIARELRRGGQIFYIHNHIA 685

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             ++   + ++E F++L       I I+H ++    +E  M  F+N    LL++T+++E 
Sbjct: 686 SIEQCK-KHLLELFSTL------RILILHSKIDAKVQEEEMLKFENKEYDLLLSTSIVES 738

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL 611
           GID+ +A+ II+E ++ FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L
Sbjct: 739 GIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL 798

Query: 612 KNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
           ++      G ++A  DL+ R  G +LG+ QSG  +   + +    L D L  +++ +   
Sbjct: 799 ESNSFLGAGSVLAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEVDQ 858


>gi|283956482|ref|ZP_06373962.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792202|gb|EFC30991.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 978

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 132/420 (31%), Positives = 220/420 (52%), Gaps = 18/420 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            I V+       + +  F  T  QE A  +ILQD      M R+L GDVG GKT VA+ A
Sbjct: 449 KITVDLNRQADFITSAGFIYTSDQEKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA 508

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +   V++G  A + AP  +L+ QHY+ +KK      I V  +      A +++ L+ +  
Sbjct: 509 IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNLKE 568

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            +A +++GTHAL    ++   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR
Sbjct: 569 NKACVVVGTHALLS--VECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPR 626

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +L          S +   P  R  ++T +   N    + E +   L  G + ++I   I 
Sbjct: 627 SLNQALSSIKSYSVLQTPPEDRMDVRTFV-KENDDALLKEAIARELRRGGQIFYIHNHIA 685

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             ++   + ++E F++L       I I+H ++    +E  M  F+N    LL++T+++E 
Sbjct: 686 SIEQCK-KHLLELFSTL------RILILHSKIDAKVQEEEMLKFENKEYDLLLSTSIVES 738

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL 611
           GID+ +A+ II+E ++ FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L
Sbjct: 739 GIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL 798

Query: 612 KNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
           ++      G ++A  DL+ R  G +LG+ QSG  +   + +    L D L  +++ +   
Sbjct: 799 ESNSFLGAGSVLAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEVDQ 858


>gi|254458302|ref|ZP_05071728.1| transcription-repair coupling factor [Campylobacterales bacterium
           GD 1]
 gi|207085138|gb|EDZ62424.1| transcription-repair coupling factor [Campylobacterales bacterium
           GD 1]
          Length = 996

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 120/445 (26%), Positives = 218/445 (48%), Gaps = 24/445 (5%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             ++RL   E+    +     R+  K      I +  K  Q+  +   F  T  Q  ++ 
Sbjct: 436 KVKKRL--MEIAGQIVNTAAARELIKA---PKITIAKKELQEFQKESGFDYTDDQTQSVD 490

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I+  M   + M R+L GDVG GKT VA+  + AA ++G Q+ ++ P  +L+ QHY  + 
Sbjct: 491 EIITQMQSGHIMDRLLSGDVGFGKTEVAMNTIFAAYKSGFQSALIVPTTLLSAQHYRSLT 550

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           +  +   I    +   +    R   ++ +A G+   ++GTH+LF   + +  L +VI+DE
Sbjct: 551 ERFEGMGIRYAKLDRFVSSKDRTNIIKGLASGEIDAVVGTHSLF--GLSFKNLGVVIIDE 608

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           +H+FGV+Q+ ++ +     H+L M+ATPIPR+L         +S++   P+ R+ ++T +
Sbjct: 609 EHKFGVKQKEQIKELYHNVHLLSMSATPIPRSLNQALSSIKTMSQLLTPPSERQGVRTFV 668

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAII 521
              +    + E +   L  G + +++   I+            +   L        + ++
Sbjct: 669 KEYSE-KLIKEVILRELRRGGQVFYVHNSIDHMPI--------KLGELKAILPDLRVVML 719

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           H ++S ++ E  +  F+     L+IAT++IE GI + + + +I++ A+ FG+A LHQLRG
Sbjct: 720 HSKISAVETEKELLKFEAREYDLMIATSIIESGIHMPNVNTMIVDGADRFGIADLHQLRG 779

Query: 582 RVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGI 636
           RVGRG        +      L+  +  RL  L++      G ++A  DL+ R  G ++G 
Sbjct: 780 RVGRGHTEGFAYFIVKDKENLTDEAKKRLLALESNSFLGSGSVLAYHDLEIRGGGNLVGD 839

Query: 637 KQSGMPKFLIAQPELHDSLLEIARK 661
            QSG  K +     L   +LE A K
Sbjct: 840 AQSGHIKNIGYSLYL--RMLEDAIK 862


>gi|315638822|ref|ZP_07893994.1| DNA helicase RecG [Campylobacter upsaliensis JV21]
 gi|315481040|gb|EFU71672.1| DNA helicase RecG [Campylobacter upsaliensis JV21]
          Length = 603

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 166/569 (29%), Positives = 274/569 (48%), Gaps = 48/569 (8%)

Query: 101 ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160
           ++L+FF+     +  VF  G  + ++GK+          +P  I          + E  Y
Sbjct: 74  VSLVFFHFSKWHM-GVFKVGATLLLSGKLGFFNQSWQFYNPKII------KKAGIFEPKY 126

Query: 161 SLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD-LLQKKSFPSIA-EAFNIIHNPRKAKDF 218
            +  G+     + +I + ++      E +++  +  K  F  +   A+++       + F
Sbjct: 127 QI-AGIKDSKIQALINDYVNY-----ENLKESGIADKFIFLLLNLHAYDVKSF----ELF 176

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +      + L Y E+        L R + KK       +E    +K L+ +PFSPTK Q 
Sbjct: 177 KNLKHFLKDLKYIEIYNF-----LKRLKNKKNPSKAYKIELFDIEKWLKTLPFSPTKDQI 231

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI DI +D+S++    R++ GDVG GKTLV L A  +      QA++MAP  ILA+Q +
Sbjct: 232 QAICDIREDLSKEVAKRRVIMGDVGCGKTLVLLAAALSVYP--KQALLMAPTSILAEQLF 289

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E  +K   +  + +  I G   + + ++ ++      AH+IIGTHAL  +  + +K +LV
Sbjct: 290 EEAQKLLPDF-LQILFIKGGKKEKNLKEQIQ-----NAHLIIGTHALIYE--EGFKAVLV 341

Query: 399 IVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           ++DEQHRFG  QR K++  A+     PH +  +ATPIPRTL +     ++ S I + P  
Sbjct: 342 MIDEQHRFGSNQRQKISTLASKEGLNPHFIQFSATPIPRTLSMIQSELLNFSFIKQMPF- 400

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           +K I T  +      ++  ++   +++  +   I P + E ++  + S+ E      +  
Sbjct: 401 KKEISTYCVQNEDFAKIKAKIDEEIAQNHQIIIIYPLVSESEKIPYLSLDE-AKFYWQKH 459

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             ++ + HG   D +K+ ++  FK     +L++TTV+EVGI +   S I+I  AE  GLA
Sbjct: 460 YKNVFVTHG--KDKEKDKILQEFKE-RGDILLSTTVVEVGISLPRLSTIVIVGAERLGLA 516

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
            LHQLRGRVGR    S C L            RL       DGF IAE DLK R  G++L
Sbjct: 517 TLHQLRGRVGRVGLKSYCYLYTKLK---EIPQRLIEFSKILDGFKIAELDLKNRLSGDLL 573

Query: 635 -GIKQSGMPKFLIAQPELHDSLLEIARKD 662
            G  Q G  +F        + +L   ++D
Sbjct: 574 DGYIQHGN-EFKFFDFANDEMILAKVKED 601


>gi|283955886|ref|ZP_06373376.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792546|gb|EFC31325.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 620

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 182/649 (28%), Positives = 288/649 (44%), Gaps = 59/649 (9%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
            F  K+           IDL    P                E  I T    I   SS   
Sbjct: 9   EFFKKLK------IRSAIDLALLLPKKIE---NLNPSKNPKENEICTQKITIKSVSS--- 56

Query: 85  QKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
           +K + + +   +   E I+ +FF+ +      V   G+++    K+ +  +     +P  
Sbjct: 57  RKNQLFGLGFCEEWQENISFVFFHPRA-WHFGVCKVGKELVFNAKLSRFNHTWQFNNPKI 115

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK-SFPSI 202
           +       +F      Y +  GL        I + L+   +    IE   +    +  + 
Sbjct: 116 L------TSFEGFSPKYQIL-GLKDTKIAAFIHKYLNYENLKESGIEDKYIHFLLNLHAY 168

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
            E    +        FE      + L Y E+        L R + K+       +     
Sbjct: 169 DEKSFFM--------FENLQNFSKDLKYIEIYNF-----LKRLKAKQTHFKAHQINVFNI 215

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
              L+++PFS TK Q +A+KDI +D+  K    R++ GDVG GKTLV L A         
Sbjct: 216 ANWLKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYP--K 273

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA++MAP  ILA Q YE  KK+  +    +  I G   +    + ++     +A++IIGT
Sbjct: 274 QAILMAPTSILAYQLYEEAKKFLPDFM-NILFIKGGKKEKDLEQNIQ-----KANLIIGT 327

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTS 439
           HAL    ++ +  +LV++DEQHRFG  QR K   L ++  APH +  +ATPIPRTL +  
Sbjct: 328 HALI--HLESHNAVLVMIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLSMIQ 385

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              ++ S I + P  +K I T  I      ++ E++K  +++  +   I P +       
Sbjct: 386 SELLNFSFIKQMPF-KKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLVSASDNIP 444

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           + S +E+     +     + + HG+     K+ +++ F++    +L++TTV+EVGI +  
Sbjct: 445 YLS-LEQARGYWQSHYEKVFVTHGKDKQ--KDEILERFRD-EGNILLSTTVVEVGISLPR 500

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            S+I+I  AE  GLA LHQLRGRVGR    S+C L           +RL    +T DGF 
Sbjct: 501 LSMIVIVGAERLGLATLHQLRGRVGRVGLKSTCYLYTKLK---EIPSRLKEFASTLDGFK 557

Query: 620 IAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD-AKHI 666
           IAE DLK R  G++L G  Q G  +F        + +LE  +KD AK I
Sbjct: 558 IAELDLKNRFSGDLLDGFMQHGN-EFKFFDFSKDEEILEKVKKDLAKKI 605


>gi|315928014|gb|EFV07334.1| DEAD/DEAH box helicase family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 589

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 131/420 (31%), Positives = 220/420 (52%), Gaps = 18/420 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            I V+       + +  F  T  Q+ A  +ILQD      M R+L GDVG GKT VA+ A
Sbjct: 60  KITVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA 119

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +   V++G  A + AP  +L+ QHY+ +KK      I V  +      A +++ L+ +  
Sbjct: 120 IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNLKE 179

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            +A +++GTHAL    ++   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR
Sbjct: 180 NKACVVVGTHALLS--VECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPR 237

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +L          S +   P  R  ++T +   N    + E +   L  G + ++I   I 
Sbjct: 238 SLNQALSSIKSYSVLQTPPEDRMDVRTFV-KENDDALLKEAIARELRRGGQIFYIHNHIA 296

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             ++   + ++E F++L       I I+H ++    +E  M  F+N    LL++T+++E 
Sbjct: 297 SIEQCK-KHLLELFSTL------RILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVES 349

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL 611
           GID+ +A+ II+E ++ FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L
Sbjct: 350 GIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL 409

Query: 612 KNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
           ++      G ++A  DL+ R  G +LG+ QSG  +   + +    L D L  +++ +   
Sbjct: 410 ESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEVDQ 469


>gi|284926314|gb|ADC28666.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 978

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 132/420 (31%), Positives = 220/420 (52%), Gaps = 18/420 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            I V+       + +  F  T  QE A  +ILQD      M R+L GDVG GKT VA+ A
Sbjct: 449 KITVDLNRQADFITSAGFIYTSDQEKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA 508

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +   V++G  A + AP  +L+ QHY+ +KK      I V  +      A +++ L+ +  
Sbjct: 509 IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNLKE 568

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            +A +++GTHAL    ++   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR
Sbjct: 569 NKACVVVGTHALLS--VECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPR 626

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +L          S +   P  R  ++T +   N    + E +   L  G + ++I   I 
Sbjct: 627 SLNQALSSIKSYSVLQTPPEDRMDVRTFV-KENDDALLKEAIARELRRGGQIFYIHNHIA 685

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             ++   + ++E F++L       I I+H ++    +E  M  F+N    LL++T+++E 
Sbjct: 686 SIEQCK-KHLLELFSTL------RILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVES 738

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL 611
           GID+ +A+ II+E ++ FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L
Sbjct: 739 GIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL 798

Query: 612 KNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
           ++      G ++A  DL+ R  G +LG+ QSG  +   + +    L D L  +++ +   
Sbjct: 799 ESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEVDQ 858


>gi|297380629|gb|ADI35516.1| ATP-dependent DNA helicase RecG [Helicobacter pylori v225d]
          Length = 621

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 174/645 (26%), Positives = 284/645 (44%), Gaps = 67/645 (10%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +               +   I    ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLKHF---ELGLSGVLEVDILDKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    N F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFN-YSAFHHNQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK- 214
                     +      K I E L +L  L E ++K+ +++     IA     I  P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLISL-ENLKKEGIKEN----IAHLLLEIFFPTPY 170

Query: 215 -AKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
             KDFE    ++S     L Y E+L       L RK+ +    I      +  +  + ++
Sbjct: 171 FVKDFETHKNFSSQHLNALKYIEMLFYMKN--LERKKLQFGAKIACPNNSERLKAFITSL 228

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF  T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP
Sbjct: 229 PFKLTNDQQNAIKEIQSDLASPIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAP 286

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA+Q Y    K+       VE++ G   +       E I     H++IGT AL  D 
Sbjct: 287 TSILAKQLYNEALKFL-PPYFEVELLLGGSHKKRSNHLFETI----THVVIGTQALLFDK 341

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDI 445
               +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  
Sbjct: 342 RDLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKT 401

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           + I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E
Sbjct: 402 TMIREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSE 460

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             +   + F   +    G+  +  KE +++ F+     +L+ATT+IEVGI +   S+++I
Sbjct: 461 GASFWQKRF-KKVYTTSGQDKN--KEEMIEEFREFGS-ILLATTLIEVGISLPRLSVMVI 516

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
              E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL
Sbjct: 517 LAPERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDL 572

Query: 626 KQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           + RK G++L G +QSG   F        ++++   ++D    +++
Sbjct: 573 EYRKSGDLLQGGEQSGN-SFEYIDLAKDENIIAEVKRDFLRSVSR 616


>gi|261840195|gb|ACX99960.1| ATP-dependent DNA helicase RecG [Helicobacter pylori 52]
          Length = 621

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 174/643 (27%), Positives = 285/643 (44%), Gaps = 63/643 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +   +           +   I +  ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLERF---ETGLSGVLEVGILEKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    N F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFN-YSAFHHNQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLISL-ENLKKEGIKENIAHLLLEIFF--PTPHFV 172

Query: 216 KDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE    + S     L Y E+L       L RK+ +    I      +  +  + ++PF
Sbjct: 173 KDFETHKNFPSQHLNALKYIEMLFYMKN--LERKKLQFNAKIACPNNSERLKAFIASLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 KLTHDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E I     H++IGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSHKKRSNHLFETI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F   +    G+  +  KE V++ F+     +L+ATT+IEVGI +   S+++I  
Sbjct: 463 SFWQKRF-KKVYTTSGQDKN--KEEVIEEFREFGS-ILLATTLIEVGISLPRLSVMVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           RK G++L G +QSG   F        ++++   ++D    +++
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDENIIAEVKRDFLRSVSR 616


>gi|170750777|ref|YP_001757037.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657299|gb|ACB26354.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1109

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 141/465 (30%), Positives = 235/465 (50%), Gaps = 18/465 (3%)

Query: 218 FEWTSPARERLAYDELLAGQI-ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  +  R RL  +  +A     +L   +  ++     +       ++      F+PT  
Sbjct: 518 LDGGTWPRRRLEAEATMARTARLMLEAARARRETEAPVLAPPASEMERFAAGFGFAPTPD 577

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q +A+  ++ D++    M R++ GDVG GKT VAL A+AAA+ +G QA ++AP  +LA+Q
Sbjct: 578 QAAAVDALMADLASGRPMDRLVCGDVGFGKTEVALRALAAAIFSGRQAALIAPTTVLARQ 637

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H E +++      + V  ++  +  A  ++    +A G   +++GTHAL    + +  L 
Sbjct: 638 HAETLRRRFGRFGVEVAQLSRLVAPAEAKRVKAGLADGTIRLVVGTHALAGGGVAFADLG 697

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L ++DE+ RFG + +  L + A   HVL +TATPIPRTL    +G   +S +   PA R+
Sbjct: 698 LTVIDEEQRFGAKMKADLRRLADGGHVLTLTATPIPRTLQAALVGLQSLSVLATPPALRQ 757

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           P++TV+ P +  + V E L      G +++ +CP+IE     +   + ER  +L      
Sbjct: 758 PVRTVVAPFD-AEAVREALIREHRRGGQSFVVCPRIE-----DIAPMAERLRALVPGL-- 809

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            I + HG +     + VM  F  G   +L+AT ++E G+DV  A+ +++  A  FGLAQL
Sbjct: 810 DILVAHGDLKPSAMDEVMVRFAEGDGDVLLATAIVESGLDVPRANTMLVWEAARFGLAQL 869

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSY-----TRLSVLKNTEDGFLIAEEDLKQRKEG 631
           HQLRGRVGRG+   +  LL  P     +        L  L     GF ++  DL  R  G
Sbjct: 870 HQLRGRVGRGQRRGTVHLLSDPAAPPPAAALQRLRALEALDRLGAGFAVSARDLDLRGAG 929

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD--PDLT 674
           +++G  Q+G     +    L+  LL++A   AK    +D  P++ 
Sbjct: 930 DLVGEDQAGHA--KLVGLGLYQHLLQLALTAAKGERAEDWSPEIE 972


>gi|315932221|gb|EFV11164.1| DEAD/DEAH box helicase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 541

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 132/420 (31%), Positives = 219/420 (52%), Gaps = 18/420 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            I V+       + +  F  T  QE A  +ILQD      M R+L GDVG GKT VA+ A
Sbjct: 12  KITVDLSRQADFITSAGFIYTSDQEKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA 71

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +   V++G  A + AP  +L+ QHY+ +KK      I V  +      A +++ L+ +  
Sbjct: 72  IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNLKE 131

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            +A +++GTHAL    ++   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR
Sbjct: 132 NKACVVVGTHALLS--VECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPR 189

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +L          S +   P  R  ++T +   N    + E +   L  G + ++I   I 
Sbjct: 190 SLNQALSSIKSYSVLQTPPEDRMDVRTFV-KENDDALLKEAIARELRRGGQIFYIHNHIA 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             ++   + ++E F++L       I I+H ++    +E  M  F+N    LL++T+++E 
Sbjct: 249 SIEQCK-KHLLELFSTL------RILILHSKIDAKVQEEEMLKFENKEYDLLLSTSIVES 301

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL 611
           GID+ +A+ II+E +  FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L
Sbjct: 302 GIDLPNANTIIVEKSNRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL 361

Query: 612 KNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
           ++      G ++A  DL+ R  G +LG+ QSG  +   + +    L D L  +++ +   
Sbjct: 362 ESNSFLGAGSVLAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEVDQ 421


>gi|308183623|ref|YP_003927750.1| ATP-dependent DNA helicase RecG [Helicobacter pylori PeCan4]
 gi|308065808|gb|ADO07700.1| ATP-dependent DNA helicase RecG [Helicobacter pylori PeCan4]
          Length = 623

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 174/636 (27%), Positives = 284/636 (44%), Gaps = 63/636 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +   +           +   I +  ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLERF---ETGLSGVLEVGILEKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    N F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFN-YSAFHYNQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLLSL-ENLKKEGVKENIAHLLLEIFF--PTPHFV 172

Query: 216 KDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE            L Y E+L       L RK+ +    I      +  +  + ++PF
Sbjct: 173 KDFETNKNFPSQHLNALKYIEMLFYMKN--LERKKLQFGAKIACPNNSERLKAFIASLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 KLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+   +   VE++ G   +       E I     H++IGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PSYFEVELLLGGSHKKRSNHLFETI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LDEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKREFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F  ++    G+  +  KE V++ F+  +  +L+ATT+IEVGI +   S+++I  
Sbjct: 463 SFWQKRF-KNVYTTSGQDKN--KEEVIEEFRE-SGSILLATTLIEVGISLPRLSVMVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           RK G++L G +QSG   F        +S++   ++D
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDESIIAEVKQD 609


>gi|188580552|ref|YP_001923997.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179344050|gb|ACB79462.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 1085

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 152/459 (33%), Positives = 241/459 (52%), Gaps = 16/459 (3%)

Query: 218 FEWTSPARERLAYDE-LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  + AR RL  +  L     A+L   ++ +K     I    +  ++      F  T  
Sbjct: 494 LDGGTWARRRLEAEATLAKAARAMLKAAQERRKAHAPQIVPPEREMERFAAGFGFPLTGD 553

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  A+++ L D++++  M R++ GDVG GKT VAL A AAA+ AG Q  +MAP  +L +Q
Sbjct: 554 QAGAVEETLDDLAREAPMDRLVCGDVGFGKTEVALRAAAAALFAGRQVAVMAPTTVLVRQ 613

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H E  ++      I V  ++  +  A  ++    +A G   +++GT AL    + ++ L 
Sbjct: 614 HVETFRRRFARFGIEVAHLSRLVSPAEAKRVKRGLADGSVRLVVGTQALAGRGVAFHDLG 673

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L I+DE+ RFG + +  L + A   H+L ++ATPIPRTL    +G   +S I   PA R+
Sbjct: 674 LAIIDEEQRFGAKTKASLRKAAGDAHILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQ 733

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PI+TVI P      +   L+     G +++ +CP+IE     +   + +R  SL      
Sbjct: 734 PIRTVIAPFEE-ATLAAALRREHRRGGQSFVVCPRIE-----DIAPMAKRLRSLVPGL-- 785

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           ++ I HG M   + +  M  F +G   +L+AT++IE G+DV  A+ +++ +AE FGLAQL
Sbjct: 786 AVVIAHGEMKPAEMDDAMVRFADGDGDVLLATSIIESGLDVPRANTMLVWDAERFGLAQL 845

Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           HQLRGRVGRG+      L  HP  PLS ++  RL  L+  +    GF I+  DL  R  G
Sbjct: 846 HQLRGRVGRGQRRGVVYLFGHPDKPLSPSTEKRLRTLEALDRLGAGFAISARDLDLRGAG 905

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           +++G  QSG     +    L+  LL++A + AK    +D
Sbjct: 906 DLVGDDQSGH--VKLVGLGLYQHLLQLALRAAKGEAAED 942


>gi|291276629|ref|YP_003516401.1| ATP-dependent DNA helicase [Helicobacter mustelae 12198]
 gi|290963823|emb|CBG39659.1| ATP-dependent DNA helicase [Helicobacter mustelae 12198]
          Length = 615

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 180/652 (27%), Positives = 275/652 (42%), Gaps = 57/652 (8%)

Query: 23  YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF 82
                +K+           +DL    P S+        I  +       +   +   S  
Sbjct: 4   TQQDYNKLKKI---GIHSLLDLCLCVPKSY---TNTFMIPHLVNNATGALE--VMTKSQL 55

Query: 83  QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142
                      + +   +ITL+ F  K    + +F   +K+ + GK++    ++ ++ P 
Sbjct: 56  IAGNTLRIAAHIPNFHRDITLIIFNHK-PFHRKIFQPNKKMLIHGKLQIQLGQLSLIQPK 114

Query: 143 YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSI 202
            +  ++  +      ++            + I+   L+   +L   +   L+     P +
Sbjct: 115 CVSTSNTILLHFKFPSIRDST-------LQDILSRHLTHDALLASPLPPSLI-----PHL 162

Query: 203 AEAFNIIHNPRKAKDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258
            E F+   NP     FE    +     E L + E+      L   R+ F  +I       
Sbjct: 163 LEIFH--PNPSFLHYFETHGNFPPKTLEALKFIEIYRHIHTLSTKRRHFPAKISCK---- 216

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
               Q  + ++PFS T SQ SAI  I +D+S +    RI+ GDVG GKT+V L ++  A 
Sbjct: 217 -NPYQDFVTSLPFSLTNSQTSAIATIAKDLSGERAARRIIMGDVGCGKTIVILASVVMAY 275

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               Q ++M P  ILA Q YE  KK      I +  I G   +  ++   E    G AH 
Sbjct: 276 P--HQCLLMVPTTILAFQIYEEAKKLL-PPYIQIRCIAGKESRKEKQGGKEG---GNAHF 329

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT--------APHVLLMTATP 430
           IIGT AL         L LV+ DEQHRFG  QR  L + A          PH L  +ATP
Sbjct: 330 IIGTQALLYREFDVQNLALVMTDEQHRFGTNQRHHLEKMAQEGDSKTLKKPHFLQFSATP 389

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +     ID S + + P  +K I T II     ++++  +K  +++  +   + P
Sbjct: 390 IPRTLSMLHAHLIDFSFMRDLPY-KKDITTRIITKTDFNQLLSHIKDEVAKSHQCAIVYP 448

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +EE +   + S+ E       HF        G     +KE V+  F++    +L+ATT+
Sbjct: 449 LVEESEHLEYLSLTEGAPFWKRHFEGVFLTSGGD---KEKEEVLSKFRD-EGSILLATTL 504

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           IEVGI +   S I+I   E  GLA LHQLRGRV R      C L  + P +     RL  
Sbjct: 505 IEVGISLPRLSTIVIIAPERIGLATLHQLRGRVSRNGLKGYCFLYTNTPKN----KRLED 560

Query: 611 LKNTEDGFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARK 661
             N   GF IAE DLK R  G++  G KQSG  +F          +L +A +
Sbjct: 561 FCNHLSGFDIAEIDLKYRSGGDLFSGEKQSGE-RFRFFDFGTDARILALAEQ 611


>gi|78777763|ref|YP_394078.1| transcription-repair coupling factor [Sulfurimonas denitrificans
           DSM 1251]
 gi|78498303|gb|ABB44843.1| Transcription-repair coupling factor [Sulfurimonas denitrificans
           DSM 1251]
          Length = 990

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 121/423 (28%), Positives = 209/423 (49%), Gaps = 19/423 (4%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
              +      INV+    +   +   F  T  Q  +I +I+  MS  + M R+L GDVG 
Sbjct: 453 AARELITAPKINVDEDELRAFQKLSGFLYTDDQSQSINEIITQMSSGHIMDRLLSGDVGF 512

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT VA+  + AA ++G Q+ ++ P  +L+ QHY  + +      I    +   +    +
Sbjct: 513 GKTEVAMNTIFAAYKSGFQSALIVPTTLLSAQHYRSLHERFDALGIKCSKLDRFVSAKDK 572

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
              ++ ++ G   +++GTH LF   + + KL +VI+DE+H+FGV+Q+ K+ +     H+L
Sbjct: 573 TNIIKALSSGDLDVVVGTHTLF--DLDFKKLGVVIIDEEHKFGVKQKEKIKELYHNVHLL 630

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            M+ATPIPR+L         +S++   P+ R+P++T +        + E L   +  G +
Sbjct: 631 SMSATPIPRSLNQALSSIKTMSQLLTPPSQRQPVRTFVKAYEE-KLIKEVLLREIRRGGQ 689

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCK 543
            +++   I+            +   L     S  + ++H ++S  D E  +  F+ G   
Sbjct: 690 IFYVHNSIDHMPI--------KLGELKALLPSLRVVMLHSKISATDTEKELLKFEAGEYD 741

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LS 601
           L++AT++IE GI +   + II++ A+ FG+A LHQLRGRVGR         + +    L+
Sbjct: 742 LMLATSIIESGIHMPRVNTIIVDGADRFGMADLHQLRGRVGRSNVEGFAYFIVNDKETLT 801

Query: 602 KNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             +  RL  L++      G ++A  DL+ R  G ++G  QSG  K +     L   LLE 
Sbjct: 802 DEAKKRLLALESNSFLGSGSVLAYHDLEIRGGGNLVGDAQSGHIKNIGYSLYL--RLLED 859

Query: 659 ARK 661
           A K
Sbjct: 860 AIK 862


>gi|108563817|ref|YP_628133.1| ATP-dependent DNA helicase RecG [Helicobacter pylori HPAG1]
 gi|107837590|gb|ABF85459.1| DNA recombinase [Helicobacter pylori HPAG1]
          Length = 623

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 176/636 (27%), Positives = 284/636 (44%), Gaps = 63/636 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +               +   I +  ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLKHF---ELGLSGVLEVGILEKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    + F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFN-YSAFHHSQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGK------ 121

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
              VY +   +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 122 ---VYLIFKKVKNH---KKIQENLQKLLSL-ENLKKEGVKENIARLLLEIFF--PTPHFV 172

Query: 216 KDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE            L Y E+L       L RK+ +    I      +  +  + ++PF
Sbjct: 173 KDFETNKNFPSQHLNALKYIEMLFYMKN--LERKKLQFGAKIACPNNSERLKAFIASLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 KLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E I     H+IIGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSRKKRSNHLFETI----THVIIGTQALLFDQRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKRDFKIVMEKINEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F  ++    G+  +  KE V++ F+  +  +L+ATT+IEVGI +   S+++I  
Sbjct: 463 SFWQKRF-KNVYTTSGQDKN--KEEVIEEFRE-SGSILLATTLIEVGISLPRLSVMVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLQY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           RK G++L G +QSG   F        + L+   ++D
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDEILIAEVKQD 609


>gi|315124568|ref|YP_004066572.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315018290|gb|ADT66383.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 978

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 132/420 (31%), Positives = 220/420 (52%), Gaps = 18/420 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            I V+       + +  F  T  QE A  +ILQD      M R+L GDVG GKT VA+ A
Sbjct: 449 KITVDLSRQADFITSAGFIYTSDQEKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA 508

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +   V++G  A + AP  +L+ QHY+ +KK      I V  +      A +++ L+ +  
Sbjct: 509 IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIEVFKLDRFTSSAEKKQVLQNLKE 568

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            +A +++GTHAL    ++   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR
Sbjct: 569 NKACVVVGTHALLS--VECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPR 626

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +L          S +   P  R  ++T +   N    + E +   L  G + ++I   I 
Sbjct: 627 SLNQALSSIKSYSVLQTPPEDRMDVRTFV-KENDDALLKEAIARELRRGGQIFYIHNHIA 685

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             ++   + ++E F++L       I I+H ++    +E  M  F+N    LL++T+++E 
Sbjct: 686 SIEQCK-KHLLELFSTL------RILILHSKIDAKVQEEEMLKFENKEYDLLLSTSIVES 738

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL 611
           GID+ +A+ II+E ++ FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L
Sbjct: 739 GIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL 798

Query: 612 KNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
           ++      G ++A  DL+ R  G +LG+ QSG  +   + +    L D L  +++ +   
Sbjct: 799 ESNSFLGAGSVLAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEVDQ 858


>gi|86151063|ref|ZP_01069279.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|86153028|ref|ZP_01071233.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613373|ref|YP_001000763.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85842233|gb|EAQ59479.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85843913|gb|EAQ61123.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249115|gb|EAQ72076.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 978

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 132/420 (31%), Positives = 220/420 (52%), Gaps = 18/420 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            I V+       + +  F  T  QE A  +ILQD      M R+L GDVG GKT VA+ A
Sbjct: 449 KITVDLSRQADFITSAGFIYTSDQEKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA 508

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +   V++G  A + AP  +L+ QHY+ +KK      I V  +      A +++ L+ +  
Sbjct: 509 IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIEVFKLDRFTSSAEKKQVLQNLKE 568

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            +A +++GTHAL    ++   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR
Sbjct: 569 NKACVVVGTHALLS--VECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPR 626

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +L          S +   P  R  ++T +   N    + E +   L  G + ++I   I 
Sbjct: 627 SLNQALSSIKSYSVLQTPPEDRMDVRTFV-KENDDALLKEAIARELRRGGQIFYIHNHIA 685

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             ++   + ++E F++L       I I+H ++    +E  M  F+N    LL++T+++E 
Sbjct: 686 SIEQCK-KHLLELFSTL------RILILHSKIDAKVQEEEMLKFENKEYDLLLSTSIVES 738

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL 611
           GID+ +A+ II+E ++ FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L
Sbjct: 739 GIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL 798

Query: 612 KNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
           ++      G ++A  DL+ R  G +LG+ QSG  +   + +    L D L  +++ +   
Sbjct: 799 ESNSFLGAGSVLAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEVDQ 858


>gi|317013293|gb|ADU83901.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Lithuania75]
          Length = 623

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 173/636 (27%), Positives = 281/636 (44%), Gaps = 63/636 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +               +   I +  ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLKHF---ELGLSGVLEVDILEKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    + F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFN-YSAFHHSQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLLSL-ENLKKEGVKENIARLLLEIFF--PTPHFV 172

Query: 216 KDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE            L Y E+L       L RK+ +    I      +  +  + ++PF
Sbjct: 173 KDFETNKNFPSQHLNALKYIEMLFYMKN--LERKKLQFGAKIACPDNSERLKAFITSLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 KLTHDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E I     H++IGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSYKKRSNHLFETI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F   + I  G+  +  KE V++ F+  +  +L+ATT+IEVGI +   S+++I  
Sbjct: 463 SFWQKRF-KKVYITSGQDKN--KEEVIEEFRE-SGSILLATTLIEVGISLPRLSVMVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           RK G++L G +QSG   F        ++++   ++D
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDENIIAEVKQD 609


>gi|317010106|gb|ADU80686.1| ATP-dependent DNA helicase RecG [Helicobacter pylori India7]
          Length = 621

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 170/637 (26%), Positives = 280/637 (43%), Gaps = 67/637 (10%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +               +   I +  ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLKHF---ELGLSGVLEVDILEKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
              + L+FF   +    N F  G  + + GK+++             F+ +  +N P I 
Sbjct: 71  --NLELVFFN-YSAFHHNQFKTGESLFIYGKLEQNS-----------FNQAYIINTPKI- 115

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSF-PSIAEAFNIIHNPRKA- 215
               L     + L  K +         L + I  + L+K+    +IA     I  P    
Sbjct: 116 ----LTEFGKISLIFKKVKNHKKMQENLQKLISLENLKKEGIKENIARLLLEIFFPTPHF 171

Query: 216 -KDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
            KDFE            L Y E+L       L RK+ +    I      +  +  + ++P
Sbjct: 172 VKDFETNKNFPSQHLNALKYIEMLFYMKN--LERKKLQFNAKIACPNNSERLKAFIASLP 229

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F  T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP 
Sbjct: 230 FKLTNDQQNAIKEIQSDLTSPIACKRLIVGDVGCGKTMVILASMVLAYPN--KTLLMAPT 287

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA+Q Y    K+      +  ++  +  + H  + +        H++IGT AL  D  
Sbjct: 288 SILAKQLYNEALKFLPPYFEVELLLGESRKKNHLFETI-------THVVIGTQALLFDKR 340

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDIS 446
              +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  +
Sbjct: 341 DLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTT 400

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E 
Sbjct: 401 MIREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEG 459

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
            +   + F   +    G+  +  KE V++ F+  +  +L+ATT+IEVGI +   S++++ 
Sbjct: 460 ASFWQKRF-KKVYTTSGQDKN--KEEVIEEFRE-SGSILLATTLIEVGISLPRLSVMVVL 515

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
             E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+
Sbjct: 516 APERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFAEEL----DGFKIAELDLE 571

Query: 627 QRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
            RK G++L G +QSG   F        ++++   ++D
Sbjct: 572 YRKSGDLLQGGEQSGN-SFEYIDLAKDENIIAEVKQD 607


>gi|157165294|ref|YP_001467043.1| transcription-repair coupling factor [Campylobacter concisus 13826]
 gi|112800411|gb|EAT97755.1| transcription-repair coupling factor [Campylobacter concisus 13826]
          Length = 981

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 127/451 (28%), Positives = 220/451 (48%), Gaps = 22/451 (4%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +    ++L A    ++ M  + +   G  +  E       +++  FS T  Q+ A+ DI 
Sbjct: 422 KEKVREKLFAIASKIVAMAAKRELIAGKILQKEDISYLNFVQDAGFSYTSDQQKAVNDIK 481

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            ++     M R+L GDVG GKT VA+ A+   +++G  A    P  +L+ QHY+ + +  
Sbjct: 482 DELKSGKVMDRLLSGDVGFGKTEVAMNAIFTCIKSGFSAFFFVPTTLLSSQHYKTLSQRF 541

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
               I V  +        +    + +   +  + +GTHAL    ++   L L++VDE+H+
Sbjct: 542 SKFGIKVFRLDRFSSAKEKSNLQKALKENEPIVCVGTHALLS--VKAENLGLIVVDEEHK 599

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+Q+ +L + +   H+L M+ATPIPR+L +        S +   P+ R  ++T +   
Sbjct: 600 FGVKQKEQLKEISQHSHILSMSATPIPRSLNMALSKIKTYSILATPPSSRLDVRTSVREW 659

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGR 524
           +    + E +   L  G + ++I   I + +        +  N L +      I I+H +
Sbjct: 660 DE-KVIKEAIMRELRRGGQTFYIHNHIADIE--------QTANELRKILPKLRILILHSK 710

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           ++    E  M  F+ G   LL+ T+++E GI + +A+ II+ENA  FG+A LHQLRGRVG
Sbjct: 711 INAKVAEDEMMKFERGEYDLLLCTSIVESGIHLPNANTIIVENANKFGMADLHQLRGRVG 770

Query: 585 RGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQS 639
           R ++ + C  L      +SK++  RL  L+       G ++A  DL+ R  G I+G  QS
Sbjct: 771 RSDKQAYCYFLVEDKDAISKDALKRLVALEGNSFLGAGSVLAYHDLEIRGGGNIIGEAQS 830

Query: 640 GMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           G  + +     L   +LE    +   +L QD
Sbjct: 831 GHIEAIGYSLYL--KMLE---DEINKLLNQD 856


>gi|57167968|ref|ZP_00367107.1| transcription-repair coupling factor [Campylobacter coli RM2228]
 gi|57020342|gb|EAL57011.1| transcription-repair coupling factor [Campylobacter coli RM2228]
          Length = 978

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 139/459 (30%), Positives = 230/459 (50%), Gaps = 21/459 (4%)

Query: 225 RERLAYDELLAG-QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
           +ERL    L    +I ++  ++   K   I I+         +    FS T+ Q  A ++
Sbjct: 421 KERLKTKLLAIASEIVIMAAKRALIKPKEIKIDYAD--QAYFVSKAGFSYTQDQNKACEE 478

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           IL D      M R+L GDVG GKT VA+ A+   V++G  A   AP  +L+ QHY+ +KK
Sbjct: 479 ILNDFENGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFFFAPTTLLSHQHYKSLKK 538

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
             +   I V  +        ++  +  +   +A ++IGTHAL    ++   L LVI+DE+
Sbjct: 539 RFEPFGIEVFKLDRFTSTKEKKTLMLNLEQNKACVVIGTHALLN--VECENLALVIIDEE 596

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           H+FGV+Q+ KL +     H+L M+ATPIPR+L          S +   P  R  ++T + 
Sbjct: 597 HKFGVKQKEKLKELTQNSHLLSMSATPIPRSLNQALSSIKSYSVLQTPPEDRLDVRTFV- 655

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
             N    + E +   L  G + ++I   I   ++   + +++ F +L       I I+H 
Sbjct: 656 KENDDALLKEAITRELRRGGQIFYIHNHIASIEQCK-KHLLDLFKNL------RILILHS 708

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           ++    +E  M  F+N    LL++T+++E GID+ +A+ +I+E ++ FG+A LHQLRGRV
Sbjct: 709 KIDAKIQEEEMLKFENKEYDLLLSTSIVESGIDLRNANTMIVERSDRFGMADLHQLRGRV 768

Query: 584 GRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQ 638
           GR +    C  L      L++++  RL  L++      G ++A  DL+ R  G +LGI Q
Sbjct: 769 GRSDRQGYCYFLVENKEELTQDALKRLVSLESNSYLGAGSVLAYHDLEIRGGGNLLGIDQ 828

Query: 639 SGMPK---FLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
           SG  +     +    L D L  + +K++      D  LT
Sbjct: 829 SGHIEQIGLSLYLKMLEDELNALTKKESFEEKKIDLKLT 867


>gi|208435387|ref|YP_002267053.1| DNA recombinase [Helicobacter pylori G27]
 gi|208433316|gb|ACI28187.1| DNA recombinase [Helicobacter pylori G27]
          Length = 623

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 174/636 (27%), Positives = 281/636 (44%), Gaps = 63/636 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +   +           +   I +  ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLERF---ETGLSGVLEVGILEKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    + F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFN-YSAFHHSQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLLSL-ENLKKEGVKENIARLLLEIFF--PTPHFV 172

Query: 216 KDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE            L Y E+L       L RK+ +    I      +     + ++PF
Sbjct: 173 KDFETNKNFPSQHLNALKYIEMLFYMKN--LERKKLQFNAKIACPNNSERLDNFIASLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 KLTCDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G + +       E I     H+IIGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGIRKKRSNHLFETI----THVIIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F   +    G+  +  KE V++ F+  +  +L+ATT+IEVGI +   S+++I  
Sbjct: 463 SFWQKRF-KKVYTTSGQDKN--KEEVIEEFRE-SGSILLATTLIEVGISLPRLSVMVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           RK G++L G +QSG   F        ++++   +KD
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDENIIAEVKKD 609


>gi|86149008|ref|ZP_01067240.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597069|ref|ZP_01100305.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562119|ref|YP_002343898.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|85840366|gb|EAQ57623.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190758|gb|EAQ94731.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359825|emb|CAL34612.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284925731|gb|ADC28083.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 607

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 180/649 (27%), Positives = 288/649 (44%), Gaps = 59/649 (9%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
            F  K+           IDL    P                E  I T    I   SS   
Sbjct: 9   EFFKKLK------IRSAIDLALLLPKKIE---NLNPSKNPKENEICTQKITIKSVSS--- 56

Query: 85  QKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
           +K + + +   +   E I+ +FF+ +      +   G+++    K+    +     +P  
Sbjct: 57  RKNQLFGLGFCEEWQENISFVFFHPRA-WHFGICKVGKELIFNAKLSHFNHTWQFNNPKI 115

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK-SFPSI 202
           +       +F      Y +  GL        I + L+   +    IE   +    +  + 
Sbjct: 116 L------TSFEGFSPKYQIL-GLKDTKIAAFIHKYLNYENLKESGIEDKYIHFLLNLHAY 168

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
            E    +        FE      + L Y E+        L R + KK       +     
Sbjct: 169 DEKSFFM--------FENLQNFSKDLKYIEIYNF-----LKRLKAKKTHFKAHQINVFNI 215

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
              L+++PFS TK Q +A+KDI +D+  K    R++ GDVG GKTLV L A         
Sbjct: 216 ANWLKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYP--K 273

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA++MAP  ILA Q YE  KK+  +    +  I G   +    + ++     +A+++IGT
Sbjct: 274 QAILMAPTSILAYQLYEEAKKFLPDFM-NILFIKGGKKEKDLEQNIQ-----KANLVIGT 327

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTS 439
           HAL    ++ +  +LV++DEQHRFG  QR K   L ++  APH +  +ATPIPRTL +  
Sbjct: 328 HALI--HLESHNAVLVMIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLSMIQ 385

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              ++ S I + P  +K I T  I      ++ E++K  +++  +   I P +    +  
Sbjct: 386 SELLNFSFIKQMPF-KKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLLSASDKIP 444

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           + S +E+     +     + + HG+     K+ +++ F++    +L++TTV+EVGI +  
Sbjct: 445 YLS-LEQAKEYWQSHYEKVFVTHGKDKQ--KDEILERFRD-EGNILLSTTVVEVGISLPR 500

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            S+I+I  AE  GLA LHQLRGRVGR    S+C L           +RL    +T DGF 
Sbjct: 501 LSMIVIVGAERLGLATLHQLRGRVGRVGLKSACYLYTKLK---EIPSRLKEFASTLDGFK 557

Query: 620 IAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD-AKHI 666
           IAE DLK R  G++L G  Q G  +F        + +LE  +KD AK +
Sbjct: 558 IAELDLKNRLSGDLLDGFMQHGN-EFKFFDFSKDEEILEKVKKDLAKKL 605


>gi|121612291|ref|YP_001000171.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005129|ref|ZP_02270887.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87250493|gb|EAQ73451.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 607

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 178/649 (27%), Positives = 286/649 (44%), Gaps = 59/649 (9%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
            F  K+           IDL    P                E  I T    I   SS   
Sbjct: 9   EFFKKLK------IRSAIDLALLLPKKIE---NLNPSKNPKENEICTQKITIKSVSS--- 56

Query: 85  QKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
           +K + + +   +   E I+ +FF+ +      +   G+++    K+    +     +P  
Sbjct: 57  RKNQLFGLGFCEEWQENISFVFFHPRA-WHFGICKVGKELIFNAKLSHFNHTWQFNNPKI 115

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK-SFPSI 202
           +       +F      Y +  GL        I + L+ + +    IE   +    +  + 
Sbjct: 116 L------TSFEGFSPKYQIL-GLKDTKIAAFIHKYLNYVNLKESGIEDKYIHFLLNLHAY 168

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
            E    +        FE      + L Y E+        L R + KK       +     
Sbjct: 169 DEKSFFM--------FENLQNFSKDLKYIEIYNF-----LKRLKAKKTHFKAHQINVFNI 215

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
              L+++PFS TK Q +A+KDI +D+  K    R++ GDVG GKTLV L A         
Sbjct: 216 ANWLKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYP--K 273

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA++MAP  ILA Q YE  KK+  +    +  I G   +    + ++     +A+++IGT
Sbjct: 274 QAILMAPTSILAYQLYEEAKKFLPDFM-NILFIKGGKKEKDLEQNIQ-----KANLVIGT 327

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTS 439
           HAL    ++ +  +LV++DEQHRFG  QR K   L ++   PH +  +ATPIPRTL +  
Sbjct: 328 HALI--HLESHNAVLVMIDEQHRFGSAQREKIHSLNKQEFTPHFIQFSATPIPRTLSMIQ 385

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              ++ S I + P   K I T  I      ++ E++K  + +  +   I P +    +  
Sbjct: 386 SELLNFSFIKQMPF-EKDITTYCIQNEGFSKLSEKIKEEIVKNHQIIIIYPLVSASDKIP 444

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           + S +E+     +     + + HG+     K+ +++ F++    +L++TTV+EVGI +  
Sbjct: 445 YLS-LEQAKEYWQSHYEKVFVTHGKDKQ--KDEILERFRD-EGNILLSTTVVEVGISLPR 500

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            S+I+I  AE  GLA LHQLRGRVGR    S+C L           +RL    +T DGF 
Sbjct: 501 LSMIVIVGAERLGLATLHQLRGRVGRVGLKSTCYLYTKLK---EIPSRLKEFASTLDGFK 557

Query: 620 IAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD-AKHI 666
           IAE DLK R  G++L G  Q G  +F        + +L+  +KD AK +
Sbjct: 558 IAELDLKNRLSGDLLDGFMQHGN-EFKFFDFSKDEEILQKVKKDLAKKL 605


>gi|283954244|ref|ZP_06371768.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           414]
 gi|283794262|gb|EFC33007.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           414]
          Length = 607

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 182/636 (28%), Positives = 290/636 (45%), Gaps = 53/636 (8%)

Query: 38  ETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDG 97
               IDL    P                E  I T    I   +S   +K + + +   + 
Sbjct: 16  IRSVIDLALLLPKKIE---NLNPSKNPKENEICTQKIIIKSVNS---RKNQLFGLGFCEE 69

Query: 98  TGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156
               I+ +FF+ +      V   G+++  + K+ +  +     +P  +  NS +   P  
Sbjct: 70  WQVNISFVFFHPRA-WHFGVCKVGKELIFSAKLTRFNHTWQFNNPKIL--NSFEGFSPKY 126

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK-SFPSIAEAFNIIHNPRKA 215
           + +     GL        I   L+   +    I++  +    +  +  E    +      
Sbjct: 127 QIL-----GLKDIKLTAFIHTYLNYENLKESGIKEKYIHFLLNLHAYDEKSFFM------ 175

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
             FE      + L Y E+        L R Q KK      ++E       L+N+PFS T+
Sbjct: 176 --FENLQNFSKDLKYIEMYNF-----LKRLQAKKMHFKAHHIEVFSIANWLKNLPFSLTE 228

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q +A+KDI +D+       R++ GDVG GKTLV L A         QA++MAP  ILA 
Sbjct: 229 DQHNALKDIEKDLHSNEAKRRVIMGDVGCGKTLVLLGAALMVYP--KQAILMAPTSILAY 286

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           Q YE  KK+  +    + +I G   + +  + ++     +A++IIGTHAL    +Q +  
Sbjct: 287 QLYEEAKKFLPDFM-NILLIKGGKKEKNLEQNIQ-----KANLIIGTHAL--THLQSHNA 338

Query: 396 ILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           +LV++DEQHRFG  QR K   L +K  APH +  +ATPIPRTL +     ++ S I + P
Sbjct: 339 VLVMIDEQHRFGSAQREKIHSLNKKEFAPHFIQFSATPIPRTLSMIQSELLNFSFIKQMP 398

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             +K I T  I      ++ E++K  +++  +   I P +       + S +E+     E
Sbjct: 399 F-KKDITTYCIQNEGFVKLNEKIKEEIAKNHQIIIIYPLVNASDSIPYLS-LEQAREYWE 456

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                + + HG+     K+ +++ F++    +L++TTV+EVGI +   S+I+I  AE  G
Sbjct: 457 SHYEKVFVTHGKDKQ--KDEILERFRD-EGNILLSTTVVEVGISLPRLSMIVIVGAERLG 513

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LA LHQLRGRVGR    S+C L           +RL    +T DGF IAE DLK R  G+
Sbjct: 514 LATLHQLRGRVGRVGLKSTCYLYTKLK---EIPSRLKEFASTLDGFKIAELDLKNRLSGD 570

Query: 633 IL-GIKQSGMPKFLIAQPELHDSLLEIARKD-AKHI 666
           +L G  Q G  +F        + +LE  +KD AK +
Sbjct: 571 LLDGFIQHGN-EFKFFDFSKDEEILEEVKKDLAKKM 605


>gi|57237967|ref|YP_179216.1| transcription-repair coupling factor [Campylobacter jejuni RM1221]
 gi|205355835|ref|ZP_03222604.1| transcription repair coupling factor [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|57166771|gb|AAW35550.1| transcription-repair coupling factor [Campylobacter jejuni RM1221]
 gi|205346269|gb|EDZ32903.1| transcription repair coupling factor [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|315058526|gb|ADT72855.1| Transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 978

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 131/420 (31%), Positives = 220/420 (52%), Gaps = 18/420 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            I V+       + +  F  T  Q+ A  +ILQD      M R+L GDVG GKT VA+ A
Sbjct: 449 KITVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA 508

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +   V++G  A + AP  +L+ QHY+ +KK      I V  +      A +++ L+ +  
Sbjct: 509 IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNLKE 568

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            +A +++GTHAL    ++   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR
Sbjct: 569 NKACVVVGTHALLS--VECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPR 626

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +L          S +   P  R  ++T +   N    + E +   L  G + ++I   I 
Sbjct: 627 SLNQALSSIKSYSVLQTPPEDRMDVRTFV-KENDDALLKEAIARELRRGGQIFYIHNHIA 685

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             ++   + ++E F++L       I I+H ++    +E  M  F+N    LL++T+++E 
Sbjct: 686 SIEQCK-KHLLELFSTL------RILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVES 738

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL 611
           GID+ +A+ II+E ++ FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L
Sbjct: 739 GIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL 798

Query: 612 KNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
           ++      G ++A  DL+ R  G +LG+ QSG  +   + +    L D L  +++ +   
Sbjct: 799 ESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEVDQ 858


>gi|88596440|ref|ZP_01099677.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562699|ref|YP_002344478.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|88191281|gb|EAQ95253.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360405|emb|CAL35202.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315929931|gb|EFV09089.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 978

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 131/420 (31%), Positives = 220/420 (52%), Gaps = 18/420 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            I V+       + +  F  T  Q+ A  +ILQD      M R+L GDVG GKT VA+ A
Sbjct: 449 KITVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA 508

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +   V++G  A + AP  +L+ QHY+ +KK      I V  +      A +++ L+ +  
Sbjct: 509 IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNLKE 568

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            +A +++GTHAL    ++   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR
Sbjct: 569 NKACVVVGTHALLS--VECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPR 626

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +L          S +   P  R  ++T +   N    + E +   L  G + ++I   I 
Sbjct: 627 SLNQALSSIKSYSVLQTPPEDRMDVRTFV-KENDDALLKEAIARELRRGGQIFYIHNHIA 685

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             ++   + ++E F++L       I I+H ++    +E  M  F+N    LL++T+++E 
Sbjct: 686 SIEQCK-KHLLELFSTL------RILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVES 738

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL 611
           GID+ +A+ II+E ++ FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L
Sbjct: 739 GIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL 798

Query: 612 KNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
           ++      G ++A  DL+ R  G +LG+ QSG  +   + +    L D L  +++ +   
Sbjct: 799 ESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEVDQ 858


>gi|308185293|ref|YP_003929426.1| ATP-dependent DNA helicase RecG [Helicobacter pylori SJM180]
 gi|308061213|gb|ADO03109.1| ATP-dependent DNA helicase RecG [Helicobacter pylori SJM180]
          Length = 623

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 173/632 (27%), Positives = 279/632 (44%), Gaps = 55/632 (8%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG--EI 101
           LL Y P  + D +   +           +   I +  ++     +  KI          +
Sbjct: 20  LLVYTPKGYKDLNLLERF---ETGLSGVLEVGILEKRNYA----KVLKIFAYSKRFCKNL 72

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
            L+FF        N F  G  + + GK+++       I+  P  +    +          
Sbjct: 73  ELVFFNYNAFYY-NQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF----- 126

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
                 +      K I E L +L  L E ++K+ +++     + E F     P   KDFE
Sbjct: 127 ----KKVKNH---KKIQENLQKLLSL-ENLKKEGVKENIAHLLLEIFF--PTPHFVKDFE 176

Query: 220 WTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
                       L Y E+L       L RK+ +    I      +  +  + ++PF  T+
Sbjct: 177 TNKNFPSQHLNALKYIEMLFYMKN--LERKKLQFGAKIACPNNSERLKAFIASLPFKLTR 234

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  ILA+
Sbjct: 235 DQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTSILAK 292

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           Q Y    K+       VE++ G   +       E I     H++IGT AL  D     + 
Sbjct: 293 QLYNEALKFL-PPYFEVELLLGGSRKKRSNHLFETI----THVVIGTQALLFDKRDLDEF 347

Query: 396 ILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
            LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + I E 
Sbjct: 348 ALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTIIREI 407

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  +   
Sbjct: 408 PY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGASFWQ 466

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           + F   +    G+  +  KE V++ F+     +L+ATT+IEVGI +   S+++I   E  
Sbjct: 467 KRF-KKVYTTSGQDKN--KEEVIEEFRELGS-ILLATTLIEVGISLPRLSVMVILAPERL 522

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ RK G
Sbjct: 523 GLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEYRKSG 578

Query: 632 EIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           ++L G +QSG   F        +S++   ++D
Sbjct: 579 DLLQGGEQSGN-SFEYIDLAKDESIIAEVKQD 609


>gi|86151660|ref|ZP_01069874.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124010|ref|YP_004066014.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841289|gb|EAQ58537.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315017732|gb|ADT65825.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 607

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 176/636 (27%), Positives = 284/636 (44%), Gaps = 53/636 (8%)

Query: 38  ETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDG 97
               IDL    P                E  I T    I   SS   +K + + +   + 
Sbjct: 16  IRSAIDLALLLPKKIE---NLNPSKNPKENEICTQKITIKSVSS---RKNQLFGLGFCEE 69

Query: 98  TGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156
             E I+ +FF+ +      +   G+++    K+ +  +     +P  +       +F   
Sbjct: 70  WQENISFVFFHPRA-WHFGICKIGKELIFNAKLSRFNHTWQFNNPKIL------TSFEGF 122

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK-SFPSIAEAFNIIHNPRKA 215
              Y +  GL        I + L+   +    IE   +    +  +  E    +      
Sbjct: 123 SPKYQIL-GLKDTKIAAFIHKYLNYENLKESGIEDKYIHFLLNLHAYDEKSFFM------ 175

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
             FE      + L Y E+        L R + KK       +        ++++PFS TK
Sbjct: 176 --FENLQNFSKDLKYIEIYNF-----LKRLKAKKTHFKAHQINVFNIANWIKDLPFSLTK 228

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q +A+KDI +D+  K+   R++ GDVG GKTLV L A         QA++MAP  ILA 
Sbjct: 229 DQLNALKDIEKDLHSKDAKRRVIMGDVGCGKTLVLLGAALMVYP--KQAILMAPTSILAY 286

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           Q YE  KK+  +    +  I G   +    + ++     +A++IIGTHAL    ++ +  
Sbjct: 287 QLYEEAKKFLPDFM-NILFIKGGKKEKDLEQNIQ-----KANLIIGTHALI--HLESHNA 338

Query: 396 ILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           +LV++DEQHRFG  QR K   L ++   PH +  +ATPIPRTL +     ++ S I + P
Sbjct: 339 VLVMIDEQHRFGSAQREKIHSLNKQEFTPHFIQFSATPIPRTLSMIQSELLNFSFIKQMP 398

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
              K I T  I      ++ E++K  + +  +   I P +    +  + S +E+     +
Sbjct: 399 F-EKDITTYCIQNEGFSKLSEKIKEEIVKNHQIIIIYPLVSASDKIPYLS-LEQAKEYWQ 456

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                + + HG+     K+ +++ F++    +L++TTV+EVGI +   S+I+I  AE  G
Sbjct: 457 SHYEKVFVTHGKDKQ--KDEILERFRD-EGNILLSTTVVEVGISLPRLSMIVIVGAERLG 513

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LA LHQLRGRVGR    S+C L           +RL    +T DGF IAE DLK R  G+
Sbjct: 514 LATLHQLRGRVGRVGLKSTCYLYTKLK---EIPSRLKEFASTLDGFKIAELDLKNRLSGD 570

Query: 633 IL-GIKQSGMPKFLIAQPELHDSLLEIARKD-AKHI 666
           +L G  Q G  +F        + +L+  +KD AK +
Sbjct: 571 LLDGFMQHGN-EFKFFDFSKDEEILQKVKKDLAKKL 605


>gi|15612477|ref|NP_224130.1| ATP-dependent DNA helicase RecG [Helicobacter pylori J99]
 gi|10720254|sp|Q9ZJA1|RECG_HELPJ RecName: Full=ATP-dependent DNA helicase recG
 gi|4156031|gb|AAD06990.1| ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
          Length = 623

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 175/636 (27%), Positives = 281/636 (44%), Gaps = 63/636 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D     +           +   I +  ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLSLLERF---ETGLSGVLEVGILEKKNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF        N F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFNHSAFYY-NQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLLSL-ENLKKEGVKENVARLLLEIFF--PTPHFV 172

Query: 216 KDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE            L Y E+L       L RK+ +    I      +  +  + ++PF
Sbjct: 173 KDFETNKNFPSQHLNALKYIEMLFYMKN--LERKKLQFNAKIACPNNSERLKAFIASLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 KLTRDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E+I     H++IGT AL  D   
Sbjct: 289 ILAKQLYHEALKFL-PPYFEVELLLGGSHKKRSNHLFEKI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + + ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKREFKIVMEKISEEIAKNHQVIVVYPLVNKSEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F  +I    G+  +  KE V++ F+     +L+ATT+IEVGI +   S+I+I  
Sbjct: 463 SFWQKRF-KNIYTTSGQDKN--KEEVIEEFRELGS-ILLATTLIEVGISLPRLSVIVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLQY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           RK G++L G KQSG   F        ++++   ++D
Sbjct: 575 RKSGDLLQGGKQSGN-SFEYIDLARDENIIAEVKQD 609


>gi|153951893|ref|YP_001397800.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939339|gb|ABS44080.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 978

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 130/420 (30%), Positives = 221/420 (52%), Gaps = 18/420 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            I V+       + +  F  T  Q+ A  +ILQD      M R+L GDVG GKT VA+ A
Sbjct: 449 KITVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQNGKVMDRLLSGDVGFGKTEVAMNA 508

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +   V++G  A + AP  +L+ QHY+ +KK      I V  +      A +++ L+ +  
Sbjct: 509 IYPVVKSGFCAFLFAPTTLLSHQHYKILKKRFDPFGIKVFKLDRFTSSAEKKQVLQNLKE 568

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            +A +++GTHAL    ++   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR
Sbjct: 569 NKACVVVGTHALLS--VECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPR 626

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +L          S +   P  R  ++T +   + +  + E +   L  G + ++I   I 
Sbjct: 627 SLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDDV-LLKEAIARELRRGGQIFYIHNHIA 685

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             ++   + ++E F++L       I I+H ++    +E  M  F+N    LL++T+++E 
Sbjct: 686 SIEQCK-KHLLELFSTL------RILILHSKIDAKVQEEEMLKFENKEYDLLLSTSIVES 738

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL 611
           GID+ +A+ II+E ++ FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L
Sbjct: 739 GIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL 798

Query: 612 KNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
           ++      G ++A  DL+ R  G +LG+ QSG  +   + +    L D L  +++ +   
Sbjct: 799 ESNSFLGAGSVLAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEVDQ 858


>gi|218514824|ref|ZP_03511664.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
           8C-3]
          Length = 520

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 202/377 (53%), Gaps = 19/377 (5%)

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           ++ GDVG GKT VAL A   A   G Q  ++ P  +LA+QH++   +  +   + V+  +
Sbjct: 1   MVCGDVGFGKTEVALRAAFVAAMNGVQVAVVVPTTLLARQHFKTFSERFRGLPVRVQQAS 60

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
             +         + +A G+  I++GTHAL    I++  L L+++DE+  FGV+ + +L +
Sbjct: 61  RLVGAKDLALTKKEVAEGKTDIVVGTHALLGAGIKFANLGLLVIDEEQHFGVKHKERLKE 120

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
             +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T I P + +  + E L 
Sbjct: 121 LKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSL-VIRETLM 179

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMD 535
                G +++++CP++ +          +    L        +A+ HG+M   + E +M+
Sbjct: 180 REHYRGGQSFYVCPRLADLA--------DVHAFLQSDVPELKVAVAHGQMPAGELEDIMN 231

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +F  G   +L++TT++E G+DV  A+ +I+  A+ FGLAQL+QLRGRVGR  ++ +  L 
Sbjct: 232 AFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRS-KVRAFALF 290

Query: 596 YHP---PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
             P    L+  +  RL VL++ +    GF +A  DL  R  G +LG +QSG         
Sbjct: 291 TLPVNKVLTATADRRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHI--KEVGF 348

Query: 650 ELHDSLLEIARKDAKHI 666
           EL+  +LE A  + K +
Sbjct: 349 ELYQQMLEEAVAEVKGV 365


>gi|307721719|ref|YP_003892859.1| ATP-dependent DNA helicase RecG [Sulfurimonas autotrophica DSM
           16294]
 gi|306979812|gb|ADN09847.1| ATP-dependent DNA helicase RecG [Sulfurimonas autotrophica DSM
           16294]
          Length = 597

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 173/659 (26%), Positives = 282/659 (42%), Gaps = 92/659 (13%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTIT-GYISQHSSF 82
           +   +K+           I+L    P S+ D      + ++   +   +    +      
Sbjct: 8   ATKFNKL------GINSLIELSLLIPHSYEDYR----LHDVLLPQKAQLIDATVESIYKA 57

Query: 83  QLQKRRPYKILLNDGTGEITLLFF------------YRKTEMLKNVFFEGRKITVTGKIK 130
                             I + FF            +R    + + F  G +    G + 
Sbjct: 58  P---------------NSIQITFFAHNLGYSVQGVLFRPKPYMLHQFQVGARDYYYGIVD 102

Query: 131 KLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIE 190
             +    M  P  I           I   Y     L  D+ ++++   + R  +L   ++
Sbjct: 103 CKQGHCSMSMPKKI------TQVGKITPKYKT--ALRSDVMQRLVKSLVKRENLLHVKLK 154

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKA--KDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +D++ +            +H P     +  E +      L Y EL +    L   R+ F 
Sbjct: 155 EDVVAE---------LLKLHFPSDEFLQLKEMSEKTLWALKYAELFSYMQMLAGKRRYFN 205

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
                 ++ +    +   +++PF+ T  Q +AI+DI QDM +     R++ GDVGSGKT+
Sbjct: 206 -----ALSSKAGDYKAWSKSLPFTLTNEQINAIEDIRQDMQKDVAAKRMVVGDVGSGKTM 260

Query: 309 VALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           V L A    +     +V+MAP  ILA Q +E  +KY    Q+ V ++T    +       
Sbjct: 261 VILAAAYMNMPNH--SVLMAPTTILANQLFEEAQKYL--PQLKVLLVTNKTKK------- 309

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVL 424
             I   +   IIGTHAL    +    LI+  VDEQHRFG  QR  L +        PH +
Sbjct: 310 --IDLCEYDFIIGTHALLYRKLPQASLIM--VDEQHRFGTAQRNMLEKMVAVQELKPHFI 365

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             +ATPIPRT  +     ID+S IT  P   K I + +I  +   +++  +K  +++  +
Sbjct: 366 QFSATPIPRTQAMIESAHIDVSLITTTPFA-KDIDSKVIHKSDFKDLLLHVKAEIAKNNQ 424

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              + P +E+ +   ++S +E   S  E    ++ + HG   D +KE V+  F+     +
Sbjct: 425 VLLVYPLVEQSEVLEYQS-IEEARSYWEKNFENVYVTHG--KDKEKEQVLLDFRE-KGDI 480

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIATTV+EVGI +   S ++I  AE  GL+ LHQLRGRV R      C L  +     N+
Sbjct: 481 LIATTVVEVGISLPRLSTVVIVGAERLGLSTLHQLRGRVSRTGLKGYCFLYTNK----NA 536

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
             RL    +T+ GF IA  DLK RK G++L GI QSG  +F        ++++   +KD
Sbjct: 537 SERLDEFIHTKSGFDIANLDLKFRKSGDLLKGISQSG-SQFRWIDFTDDENIVNEVKKD 594


>gi|258544294|ref|ZP_05704528.1| transcription-repair coupling factor [Cardiobacterium hominis ATCC
           15826]
 gi|258520446|gb|EEV89305.1| transcription-repair coupling factor [Cardiobacterium hominis ATCC
           15826]
          Length = 526

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 146/386 (37%), Positives = 214/386 (55%), Gaps = 19/386 (4%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M RI+ GDVG GKT VA+ A+ AA  AG Q  ++AP  +LA+QHY  ++    N  + ++
Sbjct: 1   MDRIICGDVGFGKTEVAVRAIHAAASAGYQVALIAPTTLLAEQHYHNLQDRFANHPLTID 60

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
            ++     A  ++A+ER+  G   +IIGTH L Q  IQ+  L LVI+DE+ RFGV+ + K
Sbjct: 61  SLSRFKSAADAKRAIERLKAGGTDLIIGTHRLLQKDIQFKNLGLVIIDEEQRFGVRHKEK 120

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           L    +  ++L +TATPIPRTL L   G  DIS I   PAGR+ I+T++   + ++ + +
Sbjct: 121 LKSLRSDTNLLTLTATPIPRTLNLALSGLRDISIIATPPAGRQNIQTILAEWD-METIRD 179

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH--FTSSIAIIHGRMSDIDKE 531
             +     G + Y +   I+           ER   L +       IAI HG+M + + E
Sbjct: 180 ACEREHRRGGQTYILHNDIDSI---------ERIARLLQDALPEQRIAIGHGQMRERELE 230

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            +M +F+N    +LIATT+IE GID+ +A+ III  A+  GL+QLHQLRGRVGR    + 
Sbjct: 231 HLMQNFQNRHYDILIATTIIESGIDIPNANTIIINRADKLGLSQLHQLRGRVGRSHHQAY 290

Query: 592 CILLYH--PPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
             L+      L K++  RL      +    GFL+A +DL+ R  GEILG +QSG  + + 
Sbjct: 291 AYLITPNWNTLGKDAQRRLEAFTTLDSLGAGFLLASQDLEIRGAGEILGDEQSGQIQQIG 350

Query: 647 AQPELHDSLLEIARKDAKHILTQDPD 672
               L   LLE +    K+  T D D
Sbjct: 351 ISYYLD--LLERSIAALKNGETADFD 374


>gi|57168600|ref|ZP_00367733.1| ATP-dependent DNA helicase RecG [Campylobacter coli RM2228]
 gi|57020105|gb|EAL56782.1| ATP-dependent DNA helicase RecG [Campylobacter coli RM2228]
          Length = 604

 Score =  279 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 181/635 (28%), Positives = 288/635 (45%), Gaps = 52/635 (8%)

Query: 38  ETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI-LLND 96
               IDL    P                E  + T    I        +K + + +    +
Sbjct: 16  IKSAIDLALILPKKIE---NLSPSKTPKENELCTQKIIIKS---IHSKKGQLFGLGFCKE 69

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156
            + +I+ +FF+ +      +   G+++ + GK+ +  +     +P  +       +F   
Sbjct: 70  WSQDISFVFFHPRA-WHFGICKIGKELILNGKLTRFGHVWQFNNPKIL------TSFAGF 122

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK-SFPSIAEAFNIIHNPRKA 215
              Y +  GL      + I + L+   +    IE   +    +  +  E   ++      
Sbjct: 123 APKYQI-QGLQDKKISEFIHKYLNYENLKESGIEDKYIHFLLNLHTYDEKSFLM------ 175

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
             FE      + L Y E+        L R + KK       +E       L+N+PFSPT+
Sbjct: 176 --FENLERFEKDLKYIEIYNF-----LKRLKAKKSHFKAYEIEIFNIANWLKNLPFSPTR 228

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q +A+KDI QD+  K    R++ GDVG GKTLV L A         QA++MAP  ILA 
Sbjct: 229 DQLNALKDIEQDLGSKEAKRRVIMGDVGCGKTLVLLGAALMVYP--KQAILMAPTSILAN 286

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           Q YE  KK      + +  I G   +    + ++     +A++IIGTHAL    +Q +  
Sbjct: 287 QLYEEAKKLLPEF-VDILFIKGGKKEKDLEEKIK-----KANLIIGTHALI--HLQSHNA 338

Query: 396 ILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           +LV++DEQHRFG  QR +   L +   APH +  +ATPIPRTL +     ++ S I E P
Sbjct: 339 VLVMIDEQHRFGSAQRQQIYSLNENELAPHFIQFSATPIPRTLSMIQSELLNFSFIKEMP 398

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             +K I T+ I      ++ E++K  +++  +   I P +    +  + S +E+     E
Sbjct: 399 F-KKDITTLCIQNEGFAKLSEKIKEEIAQNHQIIIIYPLVNPSDKIPYLS-LEQARRYWE 456

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                + + HG+     K+ +++ F++    +L++TTV+EVGI +   S I+I  AE  G
Sbjct: 457 DNYEKVFVTHGKDKQ--KDEILERFRD-EGNILLSTTVVEVGISLPRLSTIVIVGAERLG 513

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LA LHQLRGRVGR    S+C L           +RL    +T DGF IAE DLK R  G+
Sbjct: 514 LATLHQLRGRVGRVGLKSTCYLYTKLK---EIPSRLKEFASTLDGFKIAELDLKNRLSGD 570

Query: 633 IL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           +L G  Q G  +F        + +LE A+KD   I
Sbjct: 571 LLDGFIQHGN-EFKYFDFSKDEYILEKAKKDLMEI 604


>gi|317014937|gb|ADU82373.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Gambia94/24]
          Length = 623

 Score =  279 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 173/636 (27%), Positives = 282/636 (44%), Gaps = 63/636 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +   +           +   I +  ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLERF---ETGLSGVLEVGILEKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF        N F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFNYSAFYY-NQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLISL-ENLKKEGVKENIARLLLEIFF--PTPHFV 172

Query: 216 KDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE            L Y E+L       L RK+ +    I      +  +  + ++PF
Sbjct: 173 KDFETNKNFPSQHLNALKYIEMLFYMKN--LDRKKLQFNAKIACPNNSERLKAFIASLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 KLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E+I     H++IGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSHKKRSNHLFEKI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LDEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F  ++    G+  +  KE V++ F+     +L+ATT+IEVGI +   S+++I  
Sbjct: 463 SFWQKRF-KNVYTTSGQDKN--KEEVIEEFRELGS-ILLATTLIEVGISLPRLSVMVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           RK G++L G +QSG   F        ++++   ++D
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDENIIAEVKQD 609


>gi|217031874|ref|ZP_03437377.1| hypothetical protein HPB128_199g82 [Helicobacter pylori B128]
 gi|216946526|gb|EEC25128.1| hypothetical protein HPB128_199g82 [Helicobacter pylori B128]
          Length = 613

 Score =  279 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 173/636 (27%), Positives = 281/636 (44%), Gaps = 63/636 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +   +           +   I +  ++          +R YK      
Sbjct: 10  LLVYTPKGYKDLNLLERF---ETGLSGVLEVGILEKRNYAKVLKIFAYSKRFYK------ 60

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    + F  G  + + GK+++       I+  P  +    +      
Sbjct: 61  --NLELVFFN-YSAFHHSQFKTGENLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 116

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 117 --------KKVKNH---KKIQENLQKLISL-ENLKKEGVKENIAHLLLEIFF--PTPHFV 162

Query: 216 KDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE            L Y E+L       L RK+ +    I      +     + ++PF
Sbjct: 163 KDFETNKNFPSQHLNALKYIEMLFYMKN--LERKKLQFSAKIACPNNSERLDNFIASLPF 220

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 221 KLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 278

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E+I     H++IGT AL  D   
Sbjct: 279 ILAKQLYNEALKFL-PPYFEVELLLGGSHKKRSNHLFEKI----THVVIGTQALLFDKRD 333

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 334 LNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 393

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 394 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 452

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F  ++    G+  +  KE V++ F+     +L+ATT+IEVGI +   S+++I  
Sbjct: 453 SFWQKRF-KNVYTTSGQNKN--KEEVIEEFRELGS-ILLATTLIEVGISLPRLSVMVILA 508

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 509 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 564

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           RK G++L G +QSG   F        + L+   ++D
Sbjct: 565 RKSGDLLQGGEQSGN-SFEYIDLAKDEILIAEVKRD 599


>gi|109946646|ref|YP_663874.1| ATP-dependent DNA helicase RecG [Helicobacter acinonychis str.
           Sheeba]
 gi|109713867|emb|CAJ98875.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba]
          Length = 621

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 165/632 (26%), Positives = 276/632 (43%), Gaps = 57/632 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTG--EI 101
           LL Y P  + D     +           +   +    ++     +  KI          +
Sbjct: 20  LLVYTPKGYKDLSLLERF---EMGLSGVLEVDVLDKKNYA----KVLKIFAYSKQFCKNL 72

Query: 102 TLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
            L+FF   +    N F  G  + + GK+++       I+  P  +    +     L+   
Sbjct: 73  ELVFFN-YSAFHYNQFKIGESLLIYGKLEQSSFNQAYIINTPKIL---KEFGGISLLFKK 128

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
                 +  +  +K+I     +   + E I   LL+                P   KD+E
Sbjct: 129 AKNHKKI-QENLQKLISLENLKNEGIKENIAHLLLE-----------IFFPTPHFLKDYE 176

Query: 220 WTSP----ARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
           +           L Y E+L       L RK+ +    I      +     + ++PF  T 
Sbjct: 177 YYKTFPSQHLNALKYIEMLFYMKN--LERKKLQFNAKIICPNNSERLNHFIASLPFKLTN 234

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  ILA+
Sbjct: 235 DQQNAIKEIQNDLTSPIACKRLIVGDVGCGKTMVILASMVLAYPN--KTLLMAPTSILAK 292

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           Q Y    K+      +  ++ G+  + H  + +        H++IGT AL  D     + 
Sbjct: 293 QLYNEALKFLPPYFEVELLLGGSHKKNHLFEKI-------THVVIGTQALLFDKRDLDEF 345

Query: 396 ILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
            LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + I   
Sbjct: 346 ALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVQTTMIRGI 405

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           P   K IKT+++       V+E++   +++  +   + P + E ++  + S+ E  +   
Sbjct: 406 PY-PKEIKTLVLHKREFKLVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGASFWQ 464

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
           + F  ++ I  G+  +  KE V++ F+  +  +L+ATT+IEVGI +   S++++   E  
Sbjct: 465 KRF-KNVYITSGQDKN--KEEVIEEFRE-SGSILLATTLIEVGISLPRLSVMVVLAPERL 520

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ RK G
Sbjct: 521 GLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFAEEL----DGFKIAELDLEYRKSG 576

Query: 632 EIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           ++L G +QSG   F        +S++   ++D
Sbjct: 577 DLLQGGEQSGN-SFEYIDLAKDESIIAEVKQD 607


>gi|298735506|ref|YP_003728027.1| ATP-dependent DNA helicase RecG [Helicobacter pylori B8]
 gi|298354691|emb|CBI65563.1| ATP-dependent DNA helicase RecG [Helicobacter pylori B8]
          Length = 623

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 173/636 (27%), Positives = 281/636 (44%), Gaps = 63/636 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +   +           +   I +  ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLERF---ETGLSGVLEVGILEKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    + F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFN-YSAFHHSQFKTGENLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLISL-ENLKKEGVKENIAHLLLEIFF--PTPHFV 172

Query: 216 KDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE            L Y E+L       L RK+ +    I      +     + ++PF
Sbjct: 173 KDFETNKNFPSQHLNALKYIEMLFYMKN--LERKKLQFSAKIACPNNSERLDNFIASLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 KLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E+I     H++IGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSHKKRSNHLFEKI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F  ++    G+  +  KE V++ F+     +L+ATT+IEVGI +   S+++I  
Sbjct: 463 SFWQKRF-KNVYTTSGQNKN--KEEVIEEFRELGS-ILLATTLIEVGISLPRLSVMVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           RK G++L G +QSG   F        + L+   ++D
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDEILIAEVKRD 609


>gi|210135687|ref|YP_002302126.1| ATP-dependent DNA helicase RecG [Helicobacter pylori P12]
 gi|210133655|gb|ACJ08646.1| ATP-dependent DNA helicase RecG [Helicobacter pylori P12]
          Length = 623

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 172/636 (27%), Positives = 282/636 (44%), Gaps = 63/636 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +   +           +   I +  ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLERF---ETGLSGVLEVGILEKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    + F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFN-YSAFHHSQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLISL-ENLKKEGVKENIAHLLLEIFF--PTPHFV 172

Query: 216 KDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE            L Y E+L       L RK+ +    I      +  +  + ++PF
Sbjct: 173 KDFETNKNFPSQHLNALKYIEILFYMKN--LERKKLQFGAKIACPNNSERLKAFIASLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 KLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E I     H++IGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSYKKRSNHLFETI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F  ++    G+  +  KE V++ F+     +L+ATT+IEVGI +   S+++I  
Sbjct: 463 SFWQKRF-KNVYTTSGQDKN--KEEVIEEFRELGS-ILLATTLIEVGISLPRLSVMVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           RK G++L G +QSG   F        ++++   ++D
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDENIIAEVKQD 609


>gi|15646131|ref|NP_208313.1| ATP-dependent DNA helicase RecG [Helicobacter pylori 26695]
 gi|3914610|sp|O26051|RECG_HELPY RecName: Full=ATP-dependent DNA helicase recG
 gi|2314702|gb|AAD08562.1| DNA recombinase (recG) [Helicobacter pylori 26695]
          Length = 623

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 172/636 (27%), Positives = 281/636 (44%), Gaps = 63/636 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +   +           +   I +  ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLERF---ETGLSGVLEVGILEKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    + F  G  + + GK+++       I+  P  I    +      
Sbjct: 71  --NLELVFFN-YSAFHHSQFKTGESLFIYGKLEQSSFNQAYIINTPKIITKFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLISL-ENLKKEGVKENIAHLLLEIFF--PTPHFV 172

Query: 216 KDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE            L Y E+L       L RK+ +    I      +  +  + ++PF
Sbjct: 173 KDFETNKNFPSQHLNALKYIEMLFYMKN--LERKKLQFGAKIACPNNNERLKAFIASLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M        + ++MAP  
Sbjct: 231 KLTRDQQNAIKEIQNDLTSSIACKRLIIGDVGCGKTMVILASMVLTYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E I     H++IGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSYKKRSNHLFETI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F   +    G+  +  KE V++ F+  +  +L+ATT+IEVGI +   S+++I  
Sbjct: 463 SFWQKRF-KKVYTTSGQDKN--KEEVIEEFRE-SGSILLATTLIEVGISLPRLSVMVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           RK G++L G +QSG   F        ++++   ++D
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDENIIAEVKRD 609


>gi|218529447|ref|YP_002420263.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218521750|gb|ACK82335.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 1111

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 148/459 (32%), Positives = 242/459 (52%), Gaps = 16/459 (3%)

Query: 218 FEWTSPARERLAYDE-LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  + AR RL  +  L     A+L   ++ ++     I    +  ++      +  T  
Sbjct: 520 LDGGTWARRRLEAEATLAKAARAMLKAAQERREAHAPQIVPPEREMERFAAGFGYPLTGD 579

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  A+++ L D++++  M R++ GDVG GKT VAL A AAA+ AG Q  +MAP  +L +Q
Sbjct: 580 QAGAVEETLADLAREMPMDRLVCGDVGFGKTEVALRAAAAAIFAGRQIAVMAPTTVLVRQ 639

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H E  ++      I V  ++  +  A  ++  + +A G   +++GT AL    + ++ L 
Sbjct: 640 HVETFRRRFARFGIEVAHLSRLVSPAEAKRVKQGLADGSVRLVVGTQALAGRGVSFHDLG 699

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L I+DE+ RFG + +  L + A   H+L ++ATPIPRTL    +G   +S I   PA R+
Sbjct: 700 LAIIDEEQRFGAKTKASLRKAAGDAHILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQ 759

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PI+TVI P      +   L+     G +++ +CP+IE     +   + +R ++L      
Sbjct: 760 PIRTVIAPFEE-STLAAALRREHRRGGQSFVVCPRIE-----DIAPMAKRLHALVPGL-- 811

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +   HG M   + +  M  F +G   +L+AT++IE G+DV  A+ +++ +AE FGLAQL
Sbjct: 812 DVVTAHGEMKPAEMDDAMVRFADGNGDVLLATSIIESGLDVPRANTMLVWDAERFGLAQL 871

Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           HQLRGRVGRG+      L  HP  PLS ++  RL  L+  +    GF I+  DL  R  G
Sbjct: 872 HQLRGRVGRGQRRGVVYLFGHPDKPLSPSTEKRLRTLEALDRLGAGFAISARDLDLRGAG 931

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           +++G  QSG     +    L+  LL++A + AK  + +D
Sbjct: 932 DLVGDDQSGH--VKLVGLGLYQHLLQLALRAAKGEVAED 968


>gi|307638179|gb|ADN80629.1| ATP-dependent DNA helicase [Helicobacter pylori 908]
 gi|325996775|gb|ADZ52180.1| ATP-dependent DNA helicase [Helicobacter pylori 2018]
 gi|325998367|gb|ADZ50575.1| ATP-dependent DNA helicase [Helicobacter pylori 2017]
          Length = 628

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 173/636 (27%), Positives = 281/636 (44%), Gaps = 63/636 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D     +           +   I +  ++          +R YK      
Sbjct: 25  LLVYTPKGYKDLSLLERF---ETGLSGVLEVGILEKRNYAKVLKIFAYSKRFYK------ 75

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   T    + F  G  + + GK+++       I+  P  +    +      
Sbjct: 76  --NLELVFFNHST-FHHSQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 131

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 132 --------KKVKNH---KKIQENLQKLISL-ENLKKEGVKENIARLLLEIFF--PTPHFV 177

Query: 216 KDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE            L Y E+L       L RK+ +    I      +     + ++PF
Sbjct: 178 KDFETNKNFPSQHLNALKYIEMLFYMKN--LDRKKLQFNAKIACPNNSERLDNFIASLPF 235

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 236 KLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 293

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E+I     H++IGT AL  D   
Sbjct: 294 ILAKQLYHEALKFL-PPYFEVELLLGGSHKKRSHCLFEKI----THVVIGTQALLFDKRD 348

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 349 LDEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 408

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 409 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 467

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F  ++    G+  +  KE V++ F+     +L+ATT+IEVGI +   S+++I  
Sbjct: 468 SFWQKRF-KNVYTTSGQDKN--KEEVIEEFRELGS-ILLATTLIEVGISLPRLSVMVILA 523

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 524 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLQY 579

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           RK G++L G +QSG   F        ++++   ++D
Sbjct: 580 RKSGDLLQGGEQSGN-SFEYIDLARDENIIAEVKQD 614


>gi|255321495|ref|ZP_05362653.1| transcription-repair coupling factor [Campylobacter showae RM3277]
 gi|255301351|gb|EET80610.1| transcription-repair coupling factor [Campylobacter showae RM3277]
          Length = 985

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 130/431 (30%), Positives = 218/431 (50%), Gaps = 20/431 (4%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            Q +   G  I  E       L+N  F+ T+ QE A  DI  D+     M R+L GDVG 
Sbjct: 440 AQRELIRGEIIEKEDAEYLNFLQNAGFAYTRDQERASSDIANDLKSGKVMDRLLSGDVGF 499

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT VA+ A+   V++G QA+   P  +L+ QH++ +K+      + V  +        +
Sbjct: 500 GKTEVAMNAIFKCVKSGFQALFFVPTTLLSSQHFKSLKERLGKFDVSVFKLDRFTSAKEK 559

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
             A++ +  GQ  + +GTH+L    ++   L L+I+DE+H+FGV+Q+ KL + ++A HVL
Sbjct: 560 AAAVKALEAGQPCVCVGTHSLLS--VKPSNLGLIIIDEEHKFGVKQKEKLKEISSASHVL 617

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            M+ATPIPR+L +        S +   P+ R  ++T +   +    V E +   L  G +
Sbjct: 618 SMSATPIPRSLNMALSSVKGYSVLQTPPSSRLDVRTSVREWDE-KAVKEAVMRELRRGGQ 676

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ++I   I    ++  +        L       I  +H ++     E  M  F+NG   +
Sbjct: 677 IFYIHNHIATMPQAKKQI-------LDIMPNLRILTLHSKIDAKTTEEEMMKFENGEYDV 729

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSK 602
           L++T+++E GI + + + IIIE A  FG+A LHQLRGRVGR ++ + C  L      LS 
Sbjct: 730 LLSTSIVESGIHLPNVNTIIIEGANKFGIADLHQLRGRVGRSDKQAYCYFLVEDKNALSA 789

Query: 603 NSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           ++  RL  L++      G ++A  DL+ R  G ++G  QSG  + +     L+  +LE  
Sbjct: 790 DALKRLVALESNSFLGSGSVLAYHDLEIRGGGNLVGEAQSGHIEAIGYS--LYIKMLE-- 845

Query: 660 RKDAKHILTQD 670
            ++   +L ++
Sbjct: 846 -EEINKLLNKE 855


>gi|224437109|ref|ZP_03658090.1| ATP-dependent DNA helicase RecG [Helicobacter cinaedi CCUG 18818]
 gi|313143579|ref|ZP_07805772.1| ATP-dependent DNA recombinase RecG [Helicobacter cinaedi CCUG
           18818]
 gi|313128610|gb|EFR46227.1| ATP-dependent DNA recombinase RecG [Helicobacter cinaedi CCUG
           18818]
          Length = 653

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 178/679 (26%), Positives = 286/679 (42%), Gaps = 91/679 (13%)

Query: 27  LSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQK 86
           L+++     ++   FI  + + P S+         + I+      +   I   S+    K
Sbjct: 12  LNQLQKLKVSDILDFI--IHHLPKSY---TDTTPSTTITPHTNAVLRVKIHSLSTLGFGK 66

Query: 87  RRPYKIL--LNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYI 144
               +I   L D   +I LL F+ K    K +F   +++ + GK++  + R  ++ P  I
Sbjct: 67  NARLRIHAWLCDFKQDIELLIFHAK-PFHKAIFALDKELYIMGKLELYQGRFSLIQPKMI 125

Query: 145 FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL--SRLPVLPEWIEKDLLQKKSFPSI 202
                      I   +     L      +++   +    L  LP+ I +D+ +     + 
Sbjct: 126 TE------INTITPHFKTT-LLKNQTMIQLVQMLITQENLAFLPKHIAQDIYEIFHPNAE 178

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
             A +  +         ++      L + E+       LL RK+ +       + +    
Sbjct: 179 FVALHQAN--------GFSPKHLYALKFVEIYRH--LFLLSRKKIQAPSRFICDND---I 225

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
              L+++PF+ T+ Q++AIKDI  D+       R++ GDVG GK++V   A+  A     
Sbjct: 226 DSFLQSLPFTLTQGQQNAIKDIRHDLQSPIASRRLIMGDVGCGKSVVIFSAVMCAYPHA- 284

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            +V+MAP  ILA Q YE  K+      + + +IT   P   +           +H IIGT
Sbjct: 285 -SVLMAPTTILATQLYEEAKRLLPPF-VKIHLITSKTPNLSQEAK-------DSHFIIGT 335

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ-------------------------- 416
            AL     +   L LV+ DEQHRFG ++R  L +                          
Sbjct: 336 QALLYRDFRLENLALVMSDEQHRFGTKERHILEKIGQENLDSTPNLFDFSLQNALTDSMA 395

Query: 417 --------------KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
                           T PH L  +ATPIPRTL + +   I++S I + P  +K I T I
Sbjct: 396 DTNKRDSKTPLESTNKTRPHTLQFSATPIPRTLAMINSQFINLSVIKDLPF-KKDITTRI 454

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
           I  +    ++  LK  +++G +A  + P +EE +  ++ S+ E       HF     +  
Sbjct: 455 IDKSGFKALLAHLKDEIAKGNQAIIVYPLVEESQTLDYLSLTEGQGFWQRHFE---GVYC 511

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
               D +K+ V+D F      LL+ATT+IEVGI +   S I+I   E  GLA LHQLRGR
Sbjct: 512 TSGKDKNKQDVIDEFAL-KGSLLLATTLIEVGISLPKVSTIVIVAPERLGLATLHQLRGR 570

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSGM 641
           V R      C L  H   +     RL     T  GF IAE DL+ R  G++L G +QSG 
Sbjct: 571 VSRNGLKGYCYLYTHKSDNP----RLQAFAQTLSGFDIAELDLQYRSSGDLLSGTRQSGN 626

Query: 642 PKFLIAQPELHDSLLEIAR 660
            +F          ++E A+
Sbjct: 627 -EFEFIDISQDSQVIEEAK 644


>gi|268679487|ref|YP_003303918.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617518|gb|ACZ11883.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 614

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 175/649 (26%), Positives = 288/649 (44%), Gaps = 63/649 (9%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      +    +      P S+ +  Y      + +    T+   I      Q
Sbjct: 11  AERLKKLGIQTLLDLALLL------PHSYEN-TYLSSAPLLEQNN--TLHVKILSIK--Q 59

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
             K     +       +   + F       K +F +G +  V+GKI     R+ M+ P  
Sbjct: 60  SPKVLQMLLFCEVWNMQCDGVIF-APKPYQKALFKQGVECYVSGKISYKNGRLQMLQPRI 118

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
           I   +Q      +   Y  P  L      +++   LS   +L E +   + + KS  S+ 
Sbjct: 119 ITQINQ------LIPKYKTP--LQNKTVLELMKRHLSLESLLNEGL--HVKEAKSLLSLH 168

Query: 204 EAFNIIHNPRKAKDFEWTS---PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260
                   P++   FE        ++ L + E+        L +   KK           
Sbjct: 169 -----FPTPQEVSAFEKQGYPPEIQKCLKFTEIY-----NYLKKLSTKKVTFPSCAKLAG 218

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
                + ++PF+ T+ Q+  I +I +D   +N   R++ GDVG GKT+V L ++  A   
Sbjct: 219 DETAFIASLPFTLTQDQQKVIGEIKRDFLGENATKRVVMGDVGCGKTMVILSSVMMAYP- 277

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             ++V+MAP  +LA+Q +E  +K+     +   ++T         +A           +I
Sbjct: 278 -KKSVLMAPTTVLARQLFEEARKFL-PLHVKSVLVTQESDVKEDLEAF--------DFMI 327

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT----QKATAPHVLLMTATPIPRTLV 436
           GTHAL     +  + +LV+VDEQHRFG +QR  L     +KA  PH +  +ATPIPRTL 
Sbjct: 328 GTHALLYK--ELPQCVLVMVDEQHRFGTKQRSLLATLVSKKAWHPHYIQFSATPIPRTLS 385

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +     +D S I   P   K I T +I      +++  +   +S+  +   + P +EE +
Sbjct: 386 MIQSSLVDFSFIKMLPY-PKDITTKVICREHFKDLVAHIHAEISKHHQCIIVYPLVEESE 444

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N++S+ E      ++F  S+ + +G+  +  KE+++D+FK     LLI+TTV+EVGI 
Sbjct: 445 VINYQSIDEGRGFWEKNF-ESVYVTYGKDKN--KEAILDAFKE-KGNLLISTTVVEVGIS 500

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   S I+I  AE  GLA LHQLRGRV R      C L  +   S     RL     T D
Sbjct: 501 LPRLSTIVIVGAERLGLASLHQLRGRVSRNGLKGYCFLYTNLAKS----ERLEKFSQTLD 556

Query: 617 GFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           GF IAE DLK R+ G+++ G  QSG  K +  +    + +L+ A+   +
Sbjct: 557 GFEIAELDLKYRQGGDVVEGSIQSG-KKLVWFEVGSDEEILKEAKSRIE 604


>gi|315638290|ref|ZP_07893471.1| transcription-repair coupling factor [Campylobacter upsaliensis
           JV21]
 gi|315481637|gb|EFU72260.1| transcription-repair coupling factor [Campylobacter upsaliensis
           JV21]
          Length = 974

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 131/442 (29%), Positives = 216/442 (48%), Gaps = 21/442 (4%)

Query: 223 PARERLAYDELLAG-QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
             +ERL    L    QI  +  ++   K     + ++ +     ++   FS T+ Q  A 
Sbjct: 416 KLKERLKTKLLALASQIIAMAAKRALIKPKE--LKIDFEAQADFVQRAGFSYTEDQVKAC 473

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
           +DIL+D      M R+L GDVG GKT VA+ A+   +++G       P  +L+ QHY+ +
Sbjct: 474 EDILEDFKSSRVMDRLLSGDVGFGKTEVAMNAIFPVLKSGFSVFFFVPTTLLSHQHYQSL 533

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
           KK  +   + V  +        ++  LE + +    +++GTHAL    ++   + LVI+D
Sbjct: 534 KKRFEEFDLKVFKLDRFTSAKEKKYLLEELKNNTPCVVVGTHALLS--VECENVALVIID 591

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E+H+FGV+Q+ KL + +   H+L M+ATPIPR+L          S +   P  R  +++ 
Sbjct: 592 EEHKFGVKQKEKLKEFSQNSHLLSMSATPIPRSLNQALSSIKSYSILQTPPEDRLDVRSF 651

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           +   +    + E +   L  G + ++I   I        +   +   SL +     I I+
Sbjct: 652 VRE-SEDALLKEAILRELRRGGQIFYIHNHIASI-----KQCEKHLKSLFKDL--RILIL 703

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           H ++     E  M  F+N    LL+ T+++E GID+ + + IIIE +E FG+A LHQLRG
Sbjct: 704 HSKIDAKTTEEEMLKFENKAYDLLLCTSIVESGIDLPNVNTIIIEKSERFGMADLHQLRG 763

Query: 582 RVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGI 636
           RVGR  +   C  L      LS+ +  RL  L++      G L+A  DL+ R  G +LG+
Sbjct: 764 RVGRSNKQGYCYFLVEDKANLSEAALKRLVSLESNSFLGAGSLLAYHDLEIRGGGNLLGL 823

Query: 637 KQSGMPK---FLIAQPELHDSL 655
            QSG  +   + +    L D L
Sbjct: 824 DQSGHIEQIGYSLYLKMLEDEL 845


>gi|57237518|ref|YP_178532.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni RM1221]
 gi|57166322|gb|AAW35101.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni RM1221]
 gi|315057884|gb|ADT72213.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 607

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 182/650 (28%), Positives = 290/650 (44%), Gaps = 61/650 (9%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
            F  K+           IDL    P                E  I T    I   SS   
Sbjct: 9   EFFKKLK------IKSAIDLALLLPKKIE---NLNPSKNPKENEICTQKITIKSVSS--- 56

Query: 85  QKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
           +K + + +   +   E I+ +FF+ +      +   G+ +    K+ +  +     +P  
Sbjct: 57  RKNQLFGLGFCEEWQENISFVFFHPRA-WHFGICKVGKGLIFNAKLSRFNHTWQFNNPKI 115

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD-LLQKK-SFPS 201
           +       +F      Y +  GL        I + L+      E +++  +  K   F  
Sbjct: 116 L------TSFEGFSPKYQIL-GLKDAKIAAFIHKYLNY-----ENLQESGIGDKYIHFLL 163

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI 261
              A++          FE      + L Y E+        L R + KK       +    
Sbjct: 164 NLHAYDEKSF----FMFENLQNFSKDLKYIEIYNF-----LKRLKAKKTHFKAHQINVFN 214

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
               L+++PFS TK Q +A+KDI +D+  K    R++ GDVG GKTLV L A        
Sbjct: 215 IANWLKDLPFSLTKDQLNALKDIEKDLHSKEARRRVIMGDVGCGKTLVLLGAALMVYP-- 272

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA++MAP  ILA Q YE  KK+  +    +  I G   +    + ++     +A++IIG
Sbjct: 273 KQAILMAPTSILAHQLYEEAKKFLPDFM-NILFIKGGKKEKDLEQNIQ-----KANLIIG 326

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLT 438
           THAL    ++ +  +LV++DEQHRFG  QR K   L+++  APH +  +ATPIPRTL + 
Sbjct: 327 THALI--HLESHNAVLVMIDEQHRFGSAQREKIYSLSKQEFAPHFIQFSATPIPRTLSMI 384

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               ++ S I + P  +K I T  I      ++ E++K  +++  +   I P +      
Sbjct: 385 QSELLNFSFIKQMPF-KKDITTYCIQNEDFSKLSEKIKEEIAKNHQIIIIYPLVSASDNI 443

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            + S +E+     +     + + HG+     K+ +++ F++    +L++TTV+EVGI + 
Sbjct: 444 PYLS-LEQAKEYWQSHYEKVFVTHGKDKQ--KDEILERFRD-EGNILLSTTVVEVGISLP 499

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             S+I+I  AE  GLA LHQLRGRVGR    S+C L           +RL    +T DGF
Sbjct: 500 RLSMIVIVGAERLGLATLHQLRGRVGRVGLKSTCYLYTKLK---EIPSRLKEFASTLDGF 556

Query: 619 LIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD-AKHI 666
            IAE DLK R  G++L G  Q G  +F        + +LE  +KD AK +
Sbjct: 557 KIAELDLKNRLSGDLLDGFMQHGN-EFKFFDFSKDEEILEKVKKDLAKKM 605


>gi|305433019|ref|ZP_07402175.1| DNA helicase RecG [Campylobacter coli JV20]
 gi|304443720|gb|EFM36377.1| DNA helicase RecG [Campylobacter coli JV20]
          Length = 604

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 177/635 (27%), Positives = 286/635 (45%), Gaps = 52/635 (8%)

Query: 38  ETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI-LLND 96
               IDL    P                E  + T    I        +K + + +    +
Sbjct: 16  IKSAIDLALILPKKIE---NLSPSKTPKENELCTQKIIIKS---IHSKKGQLFGLGFCKE 69

Query: 97  GTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLI 156
            + +I+ +FF+ +      +   G+++ + GK+ +  +     +P  +       +F   
Sbjct: 70  WSQDISFVFFHPRA-WHFGICKIGKELILNGKLTRFGHVWQFNNPKIL------TSFAGF 122

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK-SFPSIAEAFNIIHNPRKA 215
              Y +  GL      + I + L+   +    IE   +    +  +  E   ++      
Sbjct: 123 APKYQI-QGLQDKKISEFIHKYLNYENLKESGIEDKYIHFLLNLHTYDEKSFLM------ 175

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
             FE      + L Y E+        L R + KK       +        L+++PFS TK
Sbjct: 176 --FENLERFEKDLKYIEIYNF-----LKRLKAKKTHFKAHQINVFNIANWLKDLPFSLTK 228

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q +A+KDI +D+  K    R++ GDVG GKTLV L A         QA++MAP  ILA 
Sbjct: 229 DQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYP--KQAILMAPTSILAN 286

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           Q YE  KK      + +  I G   +    + ++     +A++IIGTHAL    +Q +  
Sbjct: 287 QLYEEAKKLLPEF-VDILFIKGGKKEKDLEEKIK-----KANLIIGTHALI--HLQSHNA 338

Query: 396 ILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
           +LV++DEQHRFG  QR +   L +   APH +  +ATPIPRTL +     ++ S I E P
Sbjct: 339 VLVMIDEQHRFGSAQRQQIYSLNENELAPHFIQFSATPIPRTLSMIQSELLNFSFIKEMP 398

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             +K I T+ I      ++ E++K  +++  +   I P +    +  + S +E+     +
Sbjct: 399 F-KKDITTLCIQNEGFAKLSEKIKEEIAQNHQIIIIYPLVNPSDKIPYLS-LEQAKEYWQ 456

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                + + HG+     K+ +++ F++    +L++TTV+EVGI +   S I+I  AE  G
Sbjct: 457 SHYEKVFVTHGKDKQ--KDEILERFRD-EGNILLSTTVVEVGISLPRLSTIVIVGAERLG 513

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           LA LHQLRGRVGR    S+C L           +RL    +T DGF IAE DLK R  G+
Sbjct: 514 LATLHQLRGRVGRVGLKSTCYLYTKLK---EIPSRLKEFASTLDGFKIAELDLKNRLSGD 570

Query: 633 IL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           +L G  Q G  +F        + +LE A+KD   I
Sbjct: 571 LLDGFIQHGN-EFKYFDFSKDEYILEKAKKDLMEI 604


>gi|315585905|gb|ADU40286.1| DNA helicase RecG [Helicobacter pylori 35A]
          Length = 621

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 174/643 (27%), Positives = 278/643 (43%), Gaps = 63/643 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +               +   I    ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLKHF---ELGLSGVLEVDILDKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   +    N F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFN-YSAFHYNQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLISL-ENLKKEGIKENIAHLLLEIFF--PTPHFV 172

Query: 216 KDFE----WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE    + S     L Y E+      L   + QF     I      +  +  + ++PF
Sbjct: 173 KDFETHKNFPSQHLNALKYIEMFFYMKNLESKKLQF--SAKIACPNNSERLKAFITSLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T  Q++AIK I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 KLTNDQQNAIKAIQSDLTSPIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E I     H++IGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSYKKRSNHLFETI----THVVIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A      PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASSKGHKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F   +    G+  +  KE V++ F+     +L+ATT+IEVGI +   S+++I  
Sbjct: 463 SFWQKRF-KKVYTTSGQDKN--KEEVIEEFREFGS-ILLATTLIEVGISLPRLSVMVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           RK G++L G +QSG   F        + L+   ++D    +++
Sbjct: 575 RKSGDLLHGGEQSGN-SFEYIDLAKDEILIAEVKRDFLRSVSR 616


>gi|240137759|ref|YP_002962231.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           AM1]
 gi|240007728|gb|ACS38954.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           AM1]
          Length = 1080

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 148/459 (32%), Positives = 240/459 (52%), Gaps = 16/459 (3%)

Query: 218 FEWTSPARERLAYDE-LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  + AR RL  +  L     A+L   ++ ++     I    +  ++      +  T  
Sbjct: 489 LDGGTWARRRLEAEATLAKAARAMLKAAQERREAHAPQIVPPEREMERFAAGFGYPLTGD 548

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  A+++ L D++++  M R++ GDVG GKT VAL A AAA+ AG Q  +MAP  +L +Q
Sbjct: 549 QAGAVEETLADLAREMPMDRLVCGDVGFGKTEVALRAAAAAIFAGRQVAVMAPTTVLVRQ 608

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H E  ++      I V  ++  +  A  ++  + +A G   +++GT AL    + ++ L 
Sbjct: 609 HVETFRRRFARFGIEVAHLSRLVSPAEAKRVKQGLADGSVRLVVGTQALAGRGVSFHDLG 668

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L I+DE+ RFG + +  L + A   H+L ++ATPIPRTL    +G   +S I   PA R+
Sbjct: 669 LAIIDEEQRFGAKTKASLRKAAGDAHILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQ 728

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PI+TVI P      +   L+     G +++ +CP+IE     +   + +R  +L      
Sbjct: 729 PIRTVIAPFEET-TLAAALRREHRRGGQSFVVCPRIE-----DIAPMAKRLRALVPGL-- 780

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +   HG M   + +  M  F +G   +L+AT++IE G+DV  A+ +++ +AE FGLAQL
Sbjct: 781 DVVTAHGEMKPAEMDDAMVRFADGNGDVLLATSIIESGLDVPRANTMLVWDAERFGLAQL 840

Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           HQLRGRVGRG+      L  HP  PLS ++  RL  L+  +    GF I+  DL  R  G
Sbjct: 841 HQLRGRVGRGQRRGVVYLFGHPDKPLSPSTEKRLRTLEALDRLGAGFAISARDLDLRGAG 900

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           +++G  QSG     +    L+  LL++A + AK    +D
Sbjct: 901 DLVGDDQSGH--VKLVGLGLYQHLLQLALRAAKGEAAED 937


>gi|86150348|ref|ZP_01068574.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85839173|gb|EAQ56436.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
           jejuni CF93-6]
          Length = 978

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 131/420 (31%), Positives = 220/420 (52%), Gaps = 18/420 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            I V+       + +  F  T  Q+ A  +ILQD      M R+L GDVG GKT VA+ A
Sbjct: 449 KITVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA 508

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +   V++G  A + AP  +L+ QHY+ +KK      I V  +      A +++ L+ +  
Sbjct: 509 IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNLKE 568

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            +A +++GTHAL    ++   L LVI+DE+H+FGV+Q+ KL +     H+L M+ATPIPR
Sbjct: 569 NKACVVVGTHALLS--VECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPR 626

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +L          S +   P  R  ++T +   N    + E +   L  G + ++I   I 
Sbjct: 627 SLNQALSSIKSYSVLQIPPEDRMDVRTFV-KENDDALLKEAIARELRRGGQIFYIHNHIA 685

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             ++   + ++E F++L       I I+H ++    +E  M  F+N    LL++T+++E 
Sbjct: 686 SIEQCK-KHLLELFSTL------RILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVES 738

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL 611
           GID+ +A+ II+E ++ FG+A LHQLRGRVGR ++   C  L      ++K++  RL  L
Sbjct: 739 GIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL 798

Query: 612 KNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSLLEIARKDAKH 665
           ++      G ++A  DL+ R  G +LG+ QSG  +   + +    L D L  +++ +   
Sbjct: 799 ESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEVDQ 858


>gi|283954648|ref|ZP_06372166.1| LOW QUALITY PROTEIN: transcription-repair coupling factor
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283793840|gb|EFC32591.1| LOW QUALITY PROTEIN: transcription-repair coupling factor
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 640

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 132/410 (32%), Positives = 217/410 (52%), Gaps = 18/410 (4%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            I V+       + N  F  T  Q+ A  +ILQD      M R+L GDVG GKT VA+ A
Sbjct: 111 KIKVDLSKQADFIANAGFIYTSDQDKACYEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA 170

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +   VE+G  A + AP  +L+ QHY+ +KK   +  I V  +      A +++ L+ +  
Sbjct: 171 IYPVVESGFCAFLFAPTTLLSHQHYKTLKKRFTSFGIEVFKLDRFTSSAEKKQVLQNLKE 230

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
            +A +++GTHAL    ++   L L I+DE+H+FGV+ + KL +     H+L M+ATPIPR
Sbjct: 231 NKACVVVGTHALLS--VECENLALAIIDEEHKFGVKHKEKLKEITQNSHILSMSATPIPR 288

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +L          S +   P  R  ++T +   N    + E +   L  G + ++I   I 
Sbjct: 289 SLNQALSSIKSYSVLQIPPEDRMDVRTFV-KENDDALLKEAIVRELRRGGQIFYIHNHIA 347

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             ++   + ++E F++L       I I+H ++S   +E  M  F+N    LL++T+++E 
Sbjct: 348 SIEQCK-KHLLELFSTL------RILILHSKISAKIQEEEMLKFENKEYDLLLSTSIVES 400

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVL 611
           GID+ +A+ II+E ++ FG+A LHQLRGRVGR ++ + C  L      ++K++  RL  L
Sbjct: 401 GIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQAYCYFLIEDKNTITKDALKRLVSL 460

Query: 612 KNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQPELHDSL 655
           ++      G ++A  DL+ R  G +LG+ QSG  +   + +    L D L
Sbjct: 461 ESNSFLGAGSVLAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDEL 510


>gi|57241985|ref|ZP_00369925.1| transcription-repair coupling factor [Campylobacter upsaliensis
           RM3195]
 gi|57017177|gb|EAL53958.1| transcription-repair coupling factor [Campylobacter upsaliensis
           RM3195]
          Length = 974

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 129/427 (30%), Positives = 211/427 (49%), Gaps = 20/427 (4%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           QI  +  ++   K     I ++ +     ++   FS T+ Q  A +DIL+D      M R
Sbjct: 431 QIIAMAAKRALIKPK--KIMIDLEAQADFVQRAGFSYTEDQVKACEDILEDFKSSRVMDR 488

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           +L GDVG GKT VA+ A+   +++G       P  +L+ QHY+ +KK  +   + V  + 
Sbjct: 489 LLSGDVGFGKTEVAMNAIFPVLKSGFSVFFFVPTTLLSHQHYQSLKKRFKEFDLKVFKLD 548

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
                  ++  LE + +    +++GTHAL    ++   + LVI+DE+H+FGV+Q+ KL +
Sbjct: 549 RFTSAKEKKYLLEELKNNTPCVVVGTHALLS--VECENVALVIIDEEHKFGVKQKEKLKE 606

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
            +   H+L M+ATPIPR+L          S +   P  R  I++ +   +    + E + 
Sbjct: 607 FSQNSHLLSMSATPIPRSLNQALSSIKSYSILQTPPEDRLDIRSFVRE-SEDALLKEAIL 665

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             L  G + ++I   I        +   +   SL +     I I+H ++     E  M  
Sbjct: 666 RELRRGGQIFYIHNHIASI-----KQCEKHLKSLFKDL--RILILHSKIDAKTTEEEMLK 718

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+N    LL+ T+++E GID+ + + IIIE +E FG+A LHQLRGRVGR  +   C  L 
Sbjct: 719 FENKAYDLLLCTSIVESGIDLPNVNTIIIEKSERFGMADLHQLRGRVGRSNKQGYCYFLV 778

Query: 597 HPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK---FLIAQ 648
                LS+ +  RL  L++      G L+A  DL+ R  G +LG+ QSG  +   + +  
Sbjct: 779 EDKANLSEAALKRLVSLESNSFLGAGSLLAYHDLEIRGGGNLLGLDQSGHIEQIGYSLYL 838

Query: 649 PELHDSL 655
             L D L
Sbjct: 839 KMLEDEL 845


>gi|254780028|ref|YP_003058135.1| ATP-dependent DNA helicase RecG [Helicobacter pylori B38]
 gi|254001941|emb|CAX30198.1| ATP-dependent DNA helicase RecG [Helicobacter pylori B38]
          Length = 623

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 175/636 (27%), Positives = 280/636 (44%), Gaps = 63/636 (9%)

Query: 44  LLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL------QKRRPYKILLNDG 97
           LL Y P  + D +   +           +   I +  ++          +R YK      
Sbjct: 20  LLVYTPKGYKDLNLLERF---ETGLSGVLEVGILEKRNYAKVLKIFAYSKRFYK------ 70

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK--LKNRIIMVHPHYIFHNSQDVNFPL 155
              + L+FF   T    N F  G  + + GK+++       I+  P  +    +      
Sbjct: 71  --NLELVFFNYST-FHYNQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIF- 126

Query: 156 IEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
                     +      K I E L +L  L E ++K+ +++     + E F     P   
Sbjct: 127 --------KKVKNH---KKIQENLQKLISL-ENLKKEGVKENIARLLLEIFF--PTPHFV 172

Query: 216 KDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDFE            L Y E+L       L  K+ +    I      +     + ++PF
Sbjct: 173 KDFETNKNFPSQHLNALKYIEMLFYMKN--LEHKKLQFGAKIACTNNSERLDNFIASLPF 230

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             T+ Q++AIK+I  D++      R++ GDVG GKT+V L +M  A     + ++MAP  
Sbjct: 231 KLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVLAYPN--KTLLMAPTS 288

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q Y    K+       VE++ G   +       E I     H+IIGT AL  D   
Sbjct: 289 ILAKQLYNEALKFL-PPYFEVELLLGGSYKKRSNHLFETI----THVIIGTQALLFDKRD 343

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISK 447
             +  LVI DEQHRFG +QR +L + A+     PH L  +ATPIPRTL L     +  + 
Sbjct: 344 LNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTTM 403

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I E P   K I+T+++       V+E++   +++  +   + P + E ++  + S+ E  
Sbjct: 404 IREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEGA 462

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
           +   + F   +    G+  +  KE V++ F+  +  +L+ATT+IEVGI +   S+++I  
Sbjct: 463 SFWQKRF-KKVYTTSGQDKN--KEEVIEEFRE-SGSILLATTLIEVGISLPRLSVMVILA 518

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            E  GLA LHQLRGRV R      C L      ++        L    DGF IAE DL+ 
Sbjct: 519 PERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENERLEKFADEL----DGFKIAELDLEY 574

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           RK G++L G +QSG   F        +S++   ++D
Sbjct: 575 RKSGDLLQGGEQSGN-SFEYIDLAKDESIIAEVKQD 609


>gi|86153829|ref|ZP_01072032.1| ATP-dependent DNA helicase recG [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85842790|gb|EAQ60002.1| ATP-dependent DNA helicase recG [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 607

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 182/650 (28%), Positives = 290/650 (44%), Gaps = 61/650 (9%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
            F  K+           IDL    P                E  I T    I   SS   
Sbjct: 9   EFFKKLK------IKSAIDLALLLPKKIE---NLNPSKNPKENEICTQKITIKSVSS--- 56

Query: 85  QKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
           +K + + +   +   E I+ +FF+ +      +   G+ +    K+ +  +     +P  
Sbjct: 57  RKNQLFGLGFCEEWQENISFVFFHPRA-WHFGICKVGKGLIFNAKLSRFNHTWQFNNPKI 115

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD-LLQKK-SFPS 201
           +       +F      Y +  GL        I + L+      E +++  +  K   F  
Sbjct: 116 L------TSFEGFSPKYQIL-GLKDAKIAAFIHKYLNY-----ENLQESGIGDKYIHFLL 163

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI 261
              A++          FE      + L Y E+        L R + KK       +    
Sbjct: 164 NLHAYDEKSF----FMFENLQNFSKDLKYIEIYNF-----LKRLKAKKTHFKAHQINVFN 214

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
               L+++PFS TK Q +A+KDI +D+  K    R++ GDVG GKTLV L A        
Sbjct: 215 IANWLKDLPFSLTKDQLNALKDIEKDLHSKEARRRVIMGDVGCGKTLVLLGAALMVYP-- 272

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA++MAP  ILA Q YE  KK+  +    +  I G   +    + ++     +A++IIG
Sbjct: 273 KQAILMAPTSILAHQLYEEAKKFLPDFM-NILFIKGGKKEKDLEQNIQ-----KANLIIG 326

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLT 438
           THAL    ++ +  +LV++DEQHRFG  QR K   L+++  APH +  +ATPIPRTL + 
Sbjct: 327 THALI--HLESHNAVLVMIDEQHRFGSAQREKIYSLSKQEFAPHFIQFSATPIPRTLSMI 384

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               ++ S I + P  +K I T  I      ++ E++K  +++  +   I P +      
Sbjct: 385 QSELLNFSFIKQMPF-KKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLVSASDNI 443

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            + S +E+     +     + + HG+     K+ +++ F++    +L++TTV+EVGI + 
Sbjct: 444 PYLS-LEQAKEYWQSHYEKVFVTHGKDKQ--KDEILERFRD-EGNILLSTTVVEVGISLP 499

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             S+I+I  AE  GLA LHQLRGRVGR    S+C L           +RL    +T DGF
Sbjct: 500 RLSMIVIVGAERLGLATLHQLRGRVGRVGLKSTCYLYTKLK---EIPSRLKEFASTLDGF 556

Query: 619 LIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD-AKHI 666
            IAE DLK R  G++L G  Q G  +F        + +LE  +KD AK +
Sbjct: 557 KIAELDLKNRLSGDLLDGFMQHGN-EFKFFDFSKDEEILEKVKKDLAKKM 605


>gi|254560353|ref|YP_003067448.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens DM4]
 gi|254267631|emb|CAX23477.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           DM4]
          Length = 1111

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 148/459 (32%), Positives = 241/459 (52%), Gaps = 16/459 (3%)

Query: 218 FEWTSPARERLAYDE-LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  + AR RL  +  L     A+L   ++ ++     I    +  ++      +  T  
Sbjct: 520 LDGGTWARRRLEAEATLAKAARAMLKAAQERREAHAPQIVPPEREMERFAAGFGYPLTGD 579

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  A+++ L D++++  M R++ GDVG GKT VAL A AAA+ AG Q  +MAP  +L +Q
Sbjct: 580 QAGAVEETLADLAREMPMDRLVCGDVGFGKTEVALRAAAAAIFAGRQIAVMAPTTVLVRQ 639

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H E  ++      I V  ++  +  A  ++  + +A G   +++GT AL    + ++ L 
Sbjct: 640 HVETFRRRFARFCIEVAHLSRLVSPAEAKRVKQGLADGSVRLVVGTQALAGRGVSFHDLG 699

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L I+DE+ RFG + +  L + A   H+L ++ATPIPRTL    +G   +S I   PA R+
Sbjct: 700 LAIIDEEQRFGAKTKASLRKAAGDAHILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQ 759

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PI+TVI P      +   L+     G +++ +CP+IE     +   + +R ++L      
Sbjct: 760 PIRTVIAPFEE-STLAAALRREHRRGGQSFVVCPRIE-----DIAPMAKRLHALVPGL-- 811

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +   HG M   + +  M  F +G   +L+AT++IE G+DV  A+ +++ +AE FGLAQL
Sbjct: 812 DVVTAHGEMKPAEMDDAMVRFADGNGDVLLATSIIESGLDVPRANTMLVWDAERFGLAQL 871

Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEG 631
           HQLRGRVGRG+      L  HP  PLS ++  RL  L+  +    GF I+  DL  R  G
Sbjct: 872 HQLRGRVGRGQRRGVVYLFGHPDKPLSHSTEKRLRTLEALDRLGAGFAISARDLDLRGAG 931

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           +++G  QSG     +    L+  LL++A + AK    +D
Sbjct: 932 DLVGDDQSGH--VKLVGLGLYQHLLQLALRAAKGEAAED 968


>gi|222824038|ref|YP_002575612.1| transcription-repair coupling factor [Campylobacter lari RM2100]
 gi|222539260|gb|ACM64361.1| transcription-repair coupling factor [Campylobacter lari RM2100]
          Length = 979

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 124/441 (28%), Positives = 217/441 (49%), Gaps = 19/441 (4%)

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
             +ERL           + L   +   +    + +  ++  + +    F  TK Q    +
Sbjct: 418 KIKERLKEKLFAIASNIVSLAAARALIKAK-ELKISQELQDEFINKAGFFYTKDQSQVCQ 476

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I QD+     M R+L GDVG GKT +A+ A+   V++G  A+   P  +L+ QH++ +K
Sbjct: 477 EITQDLKSSQVMDRLLSGDVGFGKTEIAMNAIFTCVKSGYTALFFVPTTLLSAQHFKTLK 536

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
           K      I V  +        +++ L  +   +  +++GTH+L    ++   L LV++DE
Sbjct: 537 KRFDPFNIEVFKLDRFTSAKEKKQILAFLKENKPCVVVGTHSLL--GVECENLGLVVIDE 594

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
           +H+FGV+Q+ KL + +   H+L M+ATPIPR+L          S +   P  R  ++T +
Sbjct: 595 EHKFGVKQKEKLKELSKNSHILSMSATPIPRSLNQALSSLKSYSILQTPPEDRLDVRTFV 654

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
              N    + E +   L    + ++I   I        + +++ F +L       I I+H
Sbjct: 655 RESND-ALIKEAISRELRRAGQIFYIHNHIASIDGCK-KYLLDLFPNL------KILILH 706

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
            ++     E  M  F+N    LL+ T+++E GID+ +A+ II+EN++ FG+A LHQLRGR
Sbjct: 707 SKIDAKTTEEQMLKFENKEYDLLLCTSIVESGIDLANANTIIVENSDRFGMADLHQLRGR 766

Query: 583 VGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIK 637
           VGR  +   C  L      ++K+S  RL+ L++      G ++A  DL+ R  G +LG+ 
Sbjct: 767 VGRSFQQGYCYFLIEDKEKITKDSLKRLTSLESNSYLGSGSVLAYHDLEIRGGGNLLGVD 826

Query: 638 QSGMPK---FLIAQPELHDSL 655
           QSG  +   + +    L D +
Sbjct: 827 QSGHIEQIGYSLYLKMLEDEI 847


>gi|153950967|ref|YP_001398499.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938413|gb|ABS43154.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 607

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 178/644 (27%), Positives = 285/644 (44%), Gaps = 58/644 (9%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
            F  K+           IDL    P                E  I T    I   SS   
Sbjct: 9   EFFKKLK------IRSAIDLALLLPKKIE---NLNPSKNPKENEICTQKVTIKSVSS--- 56

Query: 85  QKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
           +K + + +   +   E I+ +FF+ +      +   G+++    K+ +  +     +P  
Sbjct: 57  RKNQLFGLGFCEEWQENISFVFFHPRA-WHFGICKVGKELIFNAKLLRFNHTWQFNNPKI 115

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK-SFPSI 202
           +       +F      Y +  GL        I + L+   +    IE   +    +  + 
Sbjct: 116 L------TSFEGFSPKYQIL-GLKDTKIAAFIHKYLNYENLKESGIEDKYIHFLLNLHAY 168

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
            E    +        FE      + L Y E+        L R + KK       +     
Sbjct: 169 DEKSFFM--------FENLQNFNKDLKYIEIYNF-----LKRLKAKKTYFKAHQINVFNI 215

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
              L+++PF+ TK Q +A+KDI +D+  K    R++ GDVG GKTLV L A         
Sbjct: 216 ANWLKDLPFALTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYP--K 273

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA++MAP  ILA Q Y+  KK+  +    +  I G   +    + ++     +A++IIGT
Sbjct: 274 QAILMAPTSILAYQLYDEAKKFLPDFM-NILFIKGGKKEKDLEQNIQ-----KANLIIGT 327

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTS 439
           HAL    +  Y  +LV++DEQHRFG  QR K   L ++  APH +  +ATPIPRTL +  
Sbjct: 328 HALI--HLGSYNAVLVMIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLSMMQ 385

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              ++ S I + P  +K I T  I      ++ E++K  +++  +   I P +    +  
Sbjct: 386 SELLNFSFIKQMPF-KKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLVSASDKIP 444

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
           + S +E+     +     + + HG+     K+ +++ F++    +L++TTV+EVGI +  
Sbjct: 445 YLS-LEQAKEYWQSHYEKVFVTHGKDKQ--KDEILERFRD-EGNILLSTTVVEVGISLPR 500

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            S+I+I  AE  GLA LHQLRGRVGR    S+C L           +RL    +T DGF 
Sbjct: 501 LSMIVIVGAERLGLATLHQLRGRVGRVGLKSACYLYTKLK---EIPSRLKEFASTLDGFK 557

Query: 620 IAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           IAE DLK R  G++L G  Q G  +F        + +LE  +KD
Sbjct: 558 IAELDLKNRLNGDLLDGFMQHGN-EFKFFDFSKDEKILEEVKKD 600


>gi|154147968|ref|YP_001406057.1| transcription-repair coupling factor [Campylobacter hominis ATCC
           BAA-381]
 gi|153803977|gb|ABS50984.1| transcription-repair coupling factor [Campylobacter hominis ATCC
           BAA-381]
          Length = 986

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 127/440 (28%), Positives = 218/440 (49%), Gaps = 21/440 (4%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +    ++L A    ++      +   GI I        K L +  F  TK Q++A+  I 
Sbjct: 423 KEKVREKLFAIASKIIQTAAARELVRGIVIENNTPEYAKFLSSAGFEYTKDQQNAVNAIF 482

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D+     M R++ GDVG GKT VA+ A+ A +++G  A+   P  +L+ QHY  +K+  
Sbjct: 483 TDLKSGKVMDRLISGDVGFGKTEVAMNAIFACIKSGYSALFFVPTTLLSAQHYATLKERL 542

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
              +I V  +        + +  ++I      +IIGTHAL    +    L L+I+DE+H+
Sbjct: 543 TPFKIQVFRLDRFTGAKEKAEISKKIKDKIPIVIIGTHALLNMEV--ANLGLIIIDEEHK 600

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+Q+ KL  K+ A HVL M+ATPIPR+L +        S ++  P  R  ++T +   
Sbjct: 601 FGVKQKEKLKSKSAASHVLSMSATPIPRSLNMALSSLKSYSVLSTPPLDRLDVRTFV--- 657

Query: 466 NRIDEVI--ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
              DE I  E +   +  G + +++   I   +     +  +    +  +    I I+H 
Sbjct: 658 KERDEKIIKEAIMREIRRGGQVFFVHNHIATIE-----TCRKNLQKIVPNL--KILILHS 710

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           ++     E+ +  F+ G  ++L+ T+++E GI + + + II+ENA  FG+A LHQLRGRV
Sbjct: 711 QIDAKTTENEILKFEAGEYEILLCTSIVESGIHMPNVNTIIVENANKFGIADLHQLRGRV 770

Query: 584 GRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQ 638
           GR  +   C  +      L++++  RL  L++      G ++A  DL+ R  G ++G  Q
Sbjct: 771 GRSAKQGFCYFMVEDKTALNEDAIKRLIALESNSFLGSGSVLAYHDLEIRGGGNLIGEAQ 830

Query: 639 SGMPKFLIAQPELHDSLLEI 658
           SG  + +     L+  +LE 
Sbjct: 831 SGHIEAIGYS--LYIKMLED 848


>gi|163850727|ref|YP_001638770.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163662332|gb|ABY29699.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
          Length = 1111

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 148/459 (32%), Positives = 240/459 (52%), Gaps = 16/459 (3%)

Query: 218 FEWTSPARERLAYDE-LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKS 276
            +  + AR RL  +  L     A+L   ++ ++     I    +  ++      +  T  
Sbjct: 520 LDGGTWARRRLEAEATLAKAARAMLKAAQERREAHAPQIVPPEREMERFAAGFGYPLTGD 579

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQ 336
           Q  A+++ L D++++  M R++ GDVG GKT VAL A AAA+ AG Q  +MAP  +L +Q
Sbjct: 580 QAGAVEETLADLAREMPMDRLVCGDVGFGKTEVALRAAAAAIFAGRQIAVMAPTTVLVRQ 639

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLI 396
           H E  ++      I V  ++  +  A  ++  + +A G   +++GT AL    + ++ L 
Sbjct: 640 HVETFRRRFARFGIEVAHLSRLVSPAEAKRVKQGLADGSVRLVVGTQALAGRGVSFHDLG 699

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
           L I+DE+ RFG + +  L + A   H+L ++ATPIPRTL    +G   +S I   PA R+
Sbjct: 700 LAIIDEEQRFGAKTKASLRKAAGDAHILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQ 759

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           PI+TVI P      +   L+     G +++ +CP+IE     +   + +R ++L      
Sbjct: 760 PIRTVIAPFEE-STLAAALRREHRRGGQSFVVCPRIE-----DIAPMAKRLHALVPGL-- 811

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +   HG M   + +  M  F +G   +L+AT++IE G+DV  A+ +++ +AE FGLAQL
Sbjct: 812 DVVTAHGEMKPAEMDDAMVRFADGNGDVLLATSIIESGLDVPRANTMLVWDAERFGLAQL 871

Query: 577 HQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEG 631
           HQLRGRVGRG+      L  HP  PLS ++  RL  L+       GF I+  DL  R  G
Sbjct: 872 HQLRGRVGRGQRRGVVYLFGHPDKPLSPSTEKRLRTLEVLDRLGAGFAISARDLDLRGAG 931

Query: 632 EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           +++G  QSG     +    L+  LL++A + AK    +D
Sbjct: 932 DLVGDDQSGH--VKLVGLGLYQHLLQLALRAAKGEAAED 968


>gi|218673155|ref|ZP_03522824.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
           GR56]
          Length = 585

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 116/405 (28%), Positives = 206/405 (50%), Gaps = 16/405 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + R A  +     +A  L+R   +        +     +  +     P+  T
Sbjct: 189 DKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLTRHAPVLTTPDGLYDEFSARFPYDET 248

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + Q++AI  +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA
Sbjct: 249 EDQDNAIDAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAVVVPTTLLA 308

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH++   +  +   + ++  +  +         + ++ G+  I++GTHAL    IQ+  
Sbjct: 309 RQHFKTFSERFRGLPVRIQQASRLVGAKELALTKKEVSEGKTDIVVGTHALLGAGIQFAN 368

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 369 LGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVD 428

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  ++T I P + +  + E L      G +++++CP++ +          +    L    
Sbjct: 429 RMAVRTFISPFDSL-VIRETLMREHYRGGQSFYVCPRLADL--------TDVHAFLQSDV 479

Query: 515 TS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +A+ HG+M   + E +M++F  G   +L++TT++E G+DV  A+ +I+  A+ FGL
Sbjct: 480 PELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGL 539

Query: 574 AQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRLSVLKNTE 615
           AQL+QLRGRVGR  ++ +  L   P    L+  +  RL+VL++ +
Sbjct: 540 AQLYQLRGRVGRS-KVRAFALFTLPVNNVLTATADRRLNVLQSLD 583


>gi|152993618|ref|YP_001359339.1| transcription-repair coupling factor [Sulfurovum sp. NBC37-1]
 gi|151425479|dbj|BAF72982.1| transcription-repair coupling factor [Sulfurovum sp. NBC37-1]
          Length = 994

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 140/443 (31%), Positives = 230/443 (51%), Gaps = 21/443 (4%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
           +       +A QI  L  ++  K   GI + ++ +     +    F  T+ QE AI D+L
Sbjct: 435 KVREKLFAIASQIINLSAQRHLK--KGIRMKIDREEHTLFMSKAGFLHTEDQERAINDML 492

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            DMS    M R+L  DVG GKT VA+  M  AV  G QA+++AP  +L+ QHY+ +K+  
Sbjct: 493 DDMSSGRMMDRLLSADVGFGKTEVAMNGMFVAVRNGYQAMMIAPTTLLSSQHYKSLKERF 552

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
            +    V  +        +   L+ +A G   +++GTHAL     ++  L LVI+DE+H+
Sbjct: 553 YDYGFKVAKLDRFSTTKEKNAILKGLAEGTIDVVVGTHALL--KAKFKNLALVIIDEEHK 610

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
           FGV+Q+  L + +   H+L M+ATPIPR+L +        S+I   P  R+ ++T +   
Sbjct: 611 FGVKQKEALKEMSIDVHLLSMSATPIPRSLNMALSEVKSFSEILTPPTERQGVRTFVKSY 670

Query: 466 NRIDEVI-ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
           +  D+VI E +   +  G + +++   I    E   +        L       +A++H +
Sbjct: 671 D--DKVIKEAILREMRRGGQIFYVFNSIAGIDEKKKQL-------LEILPKLRVAVLHSK 721

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +S  + E  M  F++G   +L++T+++E GI +  A+ +I+E A++FG+A LHQLRGRVG
Sbjct: 722 ISAKETEDEMLKFEDGEYDVLLSTSIVESGIHMPHANTMIVEGADNFGIADLHQLRGRVG 781

Query: 585 RGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQS 639
           RG     C  +      L++N+  RL  L++  D   G ++A  DL+ R  G I+G  QS
Sbjct: 782 RGGREGYCYFMVTDKDRLTENAKKRLIALESHSDLGSGAVLAFHDLEIRGGGNIIGEAQS 841

Query: 640 GMPKFLIAQPELHDSLLEIARKD 662
           G  K +     L   +LE A K+
Sbjct: 842 GHIKQIGYSLYL--RMLEDAIKE 862


>gi|254458684|ref|ZP_05072108.1| ATP-dependent DNA helicase [Campylobacterales bacterium GD 1]
 gi|207084450|gb|EDZ61738.1| ATP-dependent DNA helicase [Campylobacterales bacterium GD 1]
          Length = 599

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 162/644 (25%), Positives = 268/644 (41%), Gaps = 69/644 (10%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQ 85
              K+          + +L    P S+ D     +I      +   I   +         
Sbjct: 10  KFKKL------GVNSWCELALNIPHSYEDLTLHNRI---QIGKPQLIDATVESVF----- 55

Query: 86  KRRPYKILLNDGTGEITLL---FFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPH 142
            R P  I +   +  +        +R    + + F  G +    G I        M  P 
Sbjct: 56  -RAPNTIQITFYSHNLGHTISGVLFRPKPYMMHQFKVGDRDYFYGVIDCKTGNCSMSMPR 114

Query: 143 YIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSI 202
                 +      I   Y   + L  D+  +++   L+   +L E +++++ Q+      
Sbjct: 115 ------KTTTVGSITPKY--KSALRSDVMLRLVQNNLTLENLLSEGLKEEIAQE------ 160

Query: 203 AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA 262
                 +H P    + +           D L   ++   + +   K+    PI       
Sbjct: 161 ---ILKLHFPTTLVNLKELD----AKTIDALKYLELFTYMKQLSAKRRYFEPIVKVDADY 213

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           +    ++PF  T  Q  AI DI  D  +     R++ GDVGSGKT+V L + +  +    
Sbjct: 214 ETWNSSLPFKLTNEQTDAIDDIKNDFKKDVASRRMIVGDVGSGKTMVILASASMMLP--R 271

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           ++++MAP  ILA Q +E  +K+  + +    ++  N  +    +        +   IIGT
Sbjct: 272 RSILMAPTTILANQLFEEAQKFLPDAK---SVLVTNKTKKIDLQ--------EFDFIIGT 320

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ----KATAPHVLLMTATPIPRTLVLT 438
           HAL     +     LV+VDEQHRFG  QR  L +     A  PH L  +ATPIPRT  + 
Sbjct: 321 HALLYR--ELPDAGLVMVDEQHRFGTAQRNMLEKLVSSGAKKPHFLQFSATPIPRTQAMI 378

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               ID+S IT  P   K I + +I  N   +++E ++  +++  +   + P +E+ +  
Sbjct: 379 ETAHIDVSLITSTPFT-KDITSKVIHKNDFKDLLEHIEEEIAKNNQVLLVYPLVEQSEVL 437

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           +++S+ E      E    ++ + HG+     KE V+  F+     LLIATTV+EVGI + 
Sbjct: 438 DYQSIDE-ARGYWEKSFDNVYVTHGKDKQ--KEEVLLDFRE-KGSLLIATTVVEVGISLP 493

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + ++I  AE  GL+ LHQLRGRV R      C L  +   +     RL    +T  GF
Sbjct: 494 RLTTVVIVGAERLGLSTLHQLRGRVSRTGLKGYCYLYTNQSTT----DRLDRFVDTTSGF 549

Query: 619 LIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARK 661
            IA  DLK RK G++L G  QSG  +F          ++   +K
Sbjct: 550 DIANLDLKFRKSGDLLKGASQSG-SQFKWVDLSEDIEIVSEVKK 592


>gi|317479277|ref|ZP_07938412.1| transcription-repair coupling factor [Bacteroides sp. 4_1_36]
 gi|316904565|gb|EFV26384.1| transcription-repair coupling factor [Bacteroides sp. 4_1_36]
          Length = 983

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 118/383 (30%), Positives = 195/383 (50%), Gaps = 12/383 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W           + +A  +  L    Q ++E G   + +  + +++  +  +  T  Q  
Sbjct: 564 WEKLKDRTKTKIKDIARDLIKLY--SQRREEKGFQYSPDSFLQRELEASFIYEDTPDQSK 621

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           A  D+  DM     M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LA QH++
Sbjct: 622 ATSDVKADMESTRPMDRLVCGDVGFGKTEVAVRAAFKAVADNKQVAVLVPTTVLAYQHFQ 681

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K+  +     VE ++     A  +  ++ +A G+ +I+IGTH +    +++  L L+I
Sbjct: 682 TFKERLKGLPCRVEYLSRARTAAQAKAVVKGLAEGEVNILIGTHRILGKDVKFKDLGLLI 741

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ +FGV  + KL Q       L MTATPIPRTL  + +G  D+S I   P  R PI+
Sbjct: 742 IDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQ 801

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   N  + + + +   +S   + +++  +I    E   ++++ER           + 
Sbjct: 802 TEVHTFNE-EIIADAVNFEMSRNGQVFFVNNRISNLFE--LKAMIERH-----IPDCRVC 853

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           I HG+M   + E ++  F N    +L+ATT+IE GID+ +A+ III  A++FGL+ LHQ+
Sbjct: 854 IGHGQMEPAELEKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 913

Query: 580 RGRVGRGEEISS--CILLYHPPL 600
           RGRVGR  +  S  C     PPL
Sbjct: 914 RGRVGRSIKKLSVTCWHRLCPPL 936


>gi|330873192|gb|EGH07341.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 348

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 96/349 (27%), Positives = 173/349 (49%), Gaps = 16/349 (4%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+++            D+LF+ P  + DR     I  +   +   
Sbjct: 8   SVTALKGVGEAMAEKLARV------GLETLQDVLFHLPLRYQDRTRVVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   I L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLIRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+  +L +      + +A   +H+P    D E        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPDELARDYQLAPLDDAIRYLHHPPADADVEELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+  + +    + V  K+ ++ L N+ F+PT +Q+   K++  D+SQ   MLR++QGDVG
Sbjct: 240 RESLRSQRAPALPVAKKLPKQFLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVG 299

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           SGKT+VA +A   A+EAG Q  +MAP  ILA+QHY   +++ +   ++V
Sbjct: 300 SGKTVVAALAALQALEAGYQVALMAPTEILAEQHYINFQRWLEPLGVVV 348


>gi|322516062|ref|ZP_08068999.1| DNA helicase RecG [Streptococcus vestibularis ATCC 49124]
 gi|322125477|gb|EFX96823.1| DNA helicase RecG [Streptococcus vestibularis ATCC 49124]
          Length = 348

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/362 (26%), Positives = 164/362 (45%), Gaps = 26/362 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L +P++  +G G K +   +K+      +     DLL Y P  + D      I E+ +  
Sbjct: 8   LDSPIADLKGFGPKSAEKFTKL------DLHTVGDLLLYFPFRYEDF-KSKSIFELMDGE 60

Query: 69  IVTITGYISQHSSFQLQ--KRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              ITG +   ++ Q    KR      +  G   I + FF +    L +    G ++ + 
Sbjct: 61  KAVITGTVVTPANVQYYGFKRNRLSFKIKQGEAVIAISFFNQ--PYLVDKIEMGAEVAIF 118

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS--RLPV 184
           GK  + K+ +  +       +        ++ VY +  G+S     K I  A     L +
Sbjct: 119 GKWDQKKSAVTGMKVSAQVEDD-------MQPVYHVTQGVSQAQLIKAIKAAFDSGALNL 171

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           L E + + L+ K       EA + +H P   KD      A  R  ++EL   Q+ L +++
Sbjct: 172 LEESLPQVLMDKYRLMGRQEAVHAMHFP---KDLAEYKQALRRTKFEELFYFQMNLQVLK 228

Query: 245 KQFKKEIG-IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
            + K E   + I  +    +  +  +PF  T++Q+ ++ +IL DM     M R+LQGDVG
Sbjct: 229 AENKSETNGLAIAYDEAKIKSKIAELPFPLTEAQQRSLSEILADMKSGAHMNRLLQGDVG 288

Query: 304 SGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           SGKT++A +AM  A  AG Q+ +M P  ILA+QHY+  +      ++ V ++T  M  A 
Sbjct: 289 SGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQSFQGLF--PELEVALLTSGMKAAD 346

Query: 364 RR 365
           ++
Sbjct: 347 KK 348


>gi|313681446|ref|YP_004059184.1| ATP-dependent DNA helicase recg [Sulfuricurvum kujiense DSM 16994]
 gi|313154306|gb|ADR32984.1| ATP-dependent DNA helicase RecG [Sulfuricurvum kujiense DSM 16994]
          Length = 595

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 168/642 (26%), Positives = 283/642 (44%), Gaps = 64/642 (9%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +    ++        +         P+SF DR       E+       I   +      +
Sbjct: 9   AEKFHRLGVGSVTALSLIA------PASFEDRRLS---HELFHNASCVIDARVEHV--VR 57

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
             K        ++    I  + F+ K  ML   F +  +    GK +    +  +VHP  
Sbjct: 58  TPKTLKITFFAHNLECVIEGVIFHPKPYMLHQ-FPKHERAFYIGKAQWELGKWTIVHPVK 116

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
           I           +  +Y  P  L  D+ +++I++ +S   ++ + + + +  +       
Sbjct: 117 ISA------VGSLVPIYKTP--LRADVMRRLILKYVSVENLIADGLPEKIASE------- 161

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263
                IH P   K           L + EL    +  L +++++ K     +    K   
Sbjct: 162 --LYGIHFPDIPKALSEVQTY--ALKFAELFEY-MRRLRLKRRYHKTSYRALGDVKKW-- 214

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
             ++ +PF+ T  Q++AI DI  D+  +N   R++ GDVGSGKT+V L ++   +    +
Sbjct: 215 --IKTLPFALTTDQQNAIADIGSDLRGENAARRMIVGDVGSGKTMVILASVI--LMHPYR 270

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++MAP  ILA Q YE  +KY     + + ++T    +A   +            IIGTH
Sbjct: 271 SILMAPTTILAAQLYEEAQKYL--PNLRIALVTNATKKAPLEEF---------DFIIGTH 319

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRL---KLTQKATAPHVLLMTATPIPRTLVLTSL 440
           AL    +   +  LV+VDEQHRFG  QR    +LT   T+PH L  +ATPIPRT  +   
Sbjct: 320 ALLHRPLP--EAGLVMVDEQHRFGTAQRHALTRLTDNDTSPHYLQFSATPIPRTQAMIDS 377

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
             ID+S I + P   K I T II  +    +++ ++  + +  +   + P +E+ +  ++
Sbjct: 378 AHIDVSLIVQTPFT-KNIMTRIIHKSDFSALLDHIRSEIKQNHQVLIVYPLVEQSEMIDY 436

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           +S+ E      E    ++ + HG+  D +KE+V+ +F+     +L+ATTV+EVGI +   
Sbjct: 437 QSIDE-ARGYWEKNFENVYVTHGK--DKEKEAVLMAFRE-KGAILLATTVVEVGISLPRL 492

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           S ++I  AE  GL+ LHQLRGRV R      C L  +         RL        GF I
Sbjct: 493 STVVIVGAERLGLSTLHQLRGRVSRTGLQGYCYLYTNKSGKN---ERLESFSRCNSGFEI 549

Query: 621 AEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARK 661
           A  DLK R  G++L G  QSG   F  A     + ++   + 
Sbjct: 550 AALDLKFRSSGDLLDGSIQSG-KAFRWADIAEDEKIVREVKS 590


>gi|148925843|ref|ZP_01809530.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145844829|gb|EDK21933.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 612

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 178/640 (27%), Positives = 284/640 (44%), Gaps = 60/640 (9%)

Query: 25  LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQL 84
            F  K+           IDL    P                E  I T    I   SS   
Sbjct: 14  EFFKKLK------IKSAIDLALLLPKKIE---NLNPSKNPKENEICTQKITIKSVSS--- 61

Query: 85  QKRRPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
           +K + + +   +   E I+ +FF+ +      +   G+ +    K+ +  +     +P  
Sbjct: 62  RKNQLFGLGFCEEWQENISFVFFHPRA-WHFGICKVGKGLIFNAKLSRFNHTWQFNNPKI 120

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD-LLQKK-SFPS 201
           +       +F      Y +  GL        I + L+      E +++  +  K   F  
Sbjct: 121 L------TSFEGFSPKYQIL-GLKDAKIAAFIHKYLNY-----ENLQESGIGDKYIHFLL 168

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI 261
              A++          FE      + L Y E+        L R + KK       +    
Sbjct: 169 NLHAYDEKSF----FMFENLQNFSKDLKYIEIYNF-----LKRLKAKKTHFKAHQINVFN 219

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
               L+++PFS TK Q +A+KDI +D+  K    R++ GDVG GKTLV L A        
Sbjct: 220 IANWLKDLPFSLTKDQLNALKDIEKDLHSKEARRRVIMGDVGCGKTLVLLGAALMVYP-- 277

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA++MAP  ILA Q YE  KK+  +    +  I G   +    + ++     +A++IIG
Sbjct: 278 KQAILMAPTSILAHQLYEEAKKFLPDFM-NILFIKGGKKEKDLEQNIQ-----KANLIIG 331

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLT 438
           THAL    ++ +  +LV++DEQHRFG  QR K   L+++  APH +  +ATPIPRTL + 
Sbjct: 332 THALI--HLESHNAVLVMIDEQHRFGSAQREKIHSLSKQEFAPHFIQFSATPIPRTLSMI 389

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               ++ S I + P  +K I T  I      ++ E++K  +++  +   I P +      
Sbjct: 390 QSELLNFSFIKQMPF-KKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLVSASDNI 448

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
            + S +E+     +     + + HG+     K+ +++ F++    +L++TTV+EVGI + 
Sbjct: 449 PYLS-LEQAKEYWQSHYEKVFVTHGKDKQ--KDEILERFRD-EGNILLSTTVVEVGISLP 504

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             S+I+I  AE  GLA LHQLRGRVGR    S+C L           +RL    +T DGF
Sbjct: 505 RLSMIVIVGAERLGLATLHQLRGRVGRVGLKSTCYLYTKLK---EIPSRLKEFASTLDGF 561

Query: 619 LIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLE 657
            IAE DLK R  G++L G  Q G  +F        + +LE
Sbjct: 562 KIAELDLKNRLSGDLLDGFMQHGN-EFKFFDFSKDEEILE 600


>gi|255322616|ref|ZP_05363761.1| ATP-dependent DNA helicase RecG [Campylobacter showae RM3277]
 gi|255300524|gb|EET79796.1| ATP-dependent DNA helicase RecG [Campylobacter showae RM3277]
          Length = 638

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 186/677 (27%), Positives = 287/677 (42%), Gaps = 96/677 (14%)

Query: 31  INCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPY 90
           IN      T  +DL    P SF D      ++   ++  V++   I     ++       
Sbjct: 9   INLKKIGVTTLLDLALKLPKSFED----TSLAAAPKDGHVSVAVEIKSA--YRQGGMLHA 62

Query: 91  KILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQD 150
                     + ++ F  K       F  G+ + V+GK         + +P  +   ++ 
Sbjct: 63  VCWCEAWEQNVKIVIFNAK-PWHHGAFKVGKSVFVSGKCVYAYGSWQLTNPKIVTKINE- 120

Query: 151 VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIH 210
                I   Y L   L  D FK +I + ++    LP  IE  L  ++     AE    +H
Sbjct: 121 -----IIPKYKLT--LRDDSFKNLIQKYVN----LPNLIEAGLAPRE-----AEFLLDLH 164

Query: 211 NPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP 270
              +       +  RE+   D L   +I   L +   KK       ++       L+N+P
Sbjct: 165 RGDEKSVAILDALVREKAGEDVLKFVEIYNYLKKLNAKKTHFKAPKIKLFDISSWLKNLP 224

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPI 330
           F+PT  Q +AI D+  D S +  + R++ GDVGSGKTLV L A  +       A+IMAP 
Sbjct: 225 FAPTDDQLNAIADLRADFSGEEAVRRVVMGDVGSGKTLVMLAAALSVYP--RAALIMAPT 282

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            ILA+Q Y    +   +   ++ + +G+ P+               ++IIGTH L   S+
Sbjct: 283 SILAEQIYAEAARLLPDFMRVLLVKSGDKPEFD-----------GVNLIIGTHVLLYQSL 331

Query: 391 QYYKLILVIVDEQHRFGVQQRLKL------------------------------------ 414
               L++  +DEQHRFG  QR K+                                    
Sbjct: 332 PAAPLVM--IDEQHRFGSNQREKINALASGELGRDPQLDEADGEFDGKFKEGEQSNLTEI 389

Query: 415 --------TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                       T  HV+  +ATPIPRTL +      + S + + P   K I T I+   
Sbjct: 390 VPEDRQAKKADETKAHVVQFSATPIPRTLSMIQSSFAEFSFLKQMPFE-KHIHTQILQSA 448

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
              E++  +K  +++GK+   I P +E  + SN++ + E       +F +++ + HG+  
Sbjct: 449 DFGELLTHIKAQITKGKQVAVIYPLVESSENSNYQGLEEVQGFWRANF-ANVYVTHGK-- 505

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
           D +KE V+  F+     +L++TTV+EVGI +   S I+I  AE  GLA LHQLRGRVGR 
Sbjct: 506 DKEKEQVLREFRE-RGDVLLSTTVVEVGISLPRLSTIVIVGAERLGLASLHQLRGRVGRN 564

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSGMPKFL 645
                C L        N  TRL     T DGF IAE DLK R+ G+IL G  Q G     
Sbjct: 565 GGSGFCFLFTKLK---NPPTRLREFCQTLDGFKIAEIDLKNRQSGDILNGAFQHG----A 617

Query: 646 IAQPELHDSLLEIARKD 662
           I +   ++  +  A KD
Sbjct: 618 IFEYYDYEEEITQAAKD 634


>gi|309805485|ref|ZP_07699530.1| helicase C-terminal domain protein [Lactobacillus iners LactinV
           09V1-c]
 gi|308165136|gb|EFO67374.1| helicase C-terminal domain protein [Lactobacillus iners LactinV
           09V1-c]
          Length = 328

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 124/331 (37%), Positives = 208/331 (62%), Gaps = 5/331 (1%)

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            ++K    +  G  +++IGTHA+ QD + + KL LVI+DEQHRFGV QR +L  K     
Sbjct: 2   KKKKIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGKMVD 61

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I  + + +++  +   L +G
Sbjct: 62  ILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQLEQG 121

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGT 541
            + Y + P I E  + + ++    +  +  +F +  +A++HG+M+   K  +MD+F NG+
Sbjct: 122 FQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMASSQKSDIMDAFINGS 181

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            K+LI T+VIEVG+DV +A+++II NA+HFGL+QLHQLRGR+GRG   S CI +  P  +
Sbjct: 182 IKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGTTQSYCIFVSDPK-T 240

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            ++  RL ++   +DGF +A EDLK R EG++ G  QSG+P+F +     + ++   A+K
Sbjct: 241 DSAKKRLKIISTCDDGFALAREDLKLRGEGDLFGQAQSGIPQFKLGDVINNYNIFTTAQK 300

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           ++K ++ Q+P+L       +++   L +Y++
Sbjct: 301 ESKILVHQNPELVGEEYDFLKL---LMEYDD 328


>gi|220921591|ref|YP_002496892.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219946197|gb|ACL56589.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 1091

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 147/447 (32%), Positives = 223/447 (49%), Gaps = 24/447 (5%)

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
              +A    R + +     P+    +  ++      FS T  Q +AI  +L+D++    M
Sbjct: 526 MLDLAETRRRARAE-----PLIPPDRQMERFCAGFGFSLTPDQAAAIDAVLEDLAAGRPM 580

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            R++ GDVG GKT VAL A AAA+ AG Q  + AP  +L +QH E  ++      I+   
Sbjct: 581 DRLVCGDVGFGKTEVALRAAAAALFAGRQVALAAPTTVLVRQHTETFRRRFARFGIVPAQ 640

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
           ++   P A  ++    +A G   ++IGTHAL    ++   L LVI+DE+ RFG  Q+ +L
Sbjct: 641 LSRLTPPAEAKRVKAGLAEGSVRLVIGTHALAGRGVRMPDLGLVIIDEEQRFGTAQKERL 700

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            + A   HVL +TATPIPRTL    +G  D+S I   P  R+PI+TVI P    D V   
Sbjct: 701 RRAARGAHVLTLTATPIPRTLQTALVGLQDLSVIATPPVVRQPIRTVIAPFA-PDTVRAA 759

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L      G +++ +CP+I +      +       S+      +IA+ HG +     +  M
Sbjct: 760 LMREHRRGGQSFVVCPRIADLAPMEAQ-----LRSIVPEL--TIALAHGELPPDTMDEAM 812

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F  G   +L+AT +IE G+DV  A+ +++ + E FGLAQLHQLRGRVGRG+  ++  L
Sbjct: 813 VRFAAGEGDVLLATNIIESGLDVPRANTMLVWHPERFGLAQLHQLRGRVGRGQRRAAAYL 872

Query: 595 LYH-----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           L       P  S+     L+ L     GF ++  DL  R  G++ G  Q+G  K +    
Sbjct: 873 LTDPQARLPAASEKRLRTLAALDRLGAGFALSARDLDLRGAGDLFGEDQAGHVKLIGLDL 932

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSV 676
                LLE A + A+     +PD  + 
Sbjct: 933 YRD--LLERAVRAARG----EPDEAAP 953


>gi|146339310|ref|YP_001204358.1| putative transcription repair coupling factor [Bradyrhizobium sp.
           ORS278]
 gi|146192116|emb|CAL76121.1| putative transcription repair coupling factor [Bradyrhizobium sp.
           ORS278]
          Length = 1091

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 142/402 (35%), Positives = 212/402 (52%), Gaps = 16/402 (3%)

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            ++ +   P+  T  Q +AI+D+L+D+   + M RI+ GDVG GKT +AL A AA V AG
Sbjct: 533 YERFVARFPYLVTPDQAAAIEDVLKDLGAGHPMDRIVCGDVGFGKTEIALRAAAATVFAG 592

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q  ++ P  +LA QH +   K      I V  ++     A  R    ++A G   ++IG
Sbjct: 593 RQVALIVPTTVLAAQHVQTFVKRFAPFGISVGHLSRLSTTADARSTRRQLADGTLKLVIG 652

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T AL  D +++  L LVIVDE+  FG   + +L+      H L M+ATPIPRT+     G
Sbjct: 653 TTALAADDVRFADLGLVIVDEEQHFGAADKARLSALRAGVHALTMSATPIPRTMAGAMAG 712

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNF 500
             D+S I   P  R+P+ T + P+  +D  +    +     G +++ ICP+I++      
Sbjct: 713 LRDLSIIATPPVRRRPVLTKVEPL--LDATLSMALRREHRRGGQSFVICPRIKDL----- 765

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             + ER + L       IA+IHGRM   + ++ M  F  G   +L+AT ++E G+D+  A
Sbjct: 766 APMRERLSHLVPEL--GIAMIHGRMPAREIDAEMMRFVAGKADILLATNIVENGLDIPRA 823

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT---EDG 617
           + I+I  AEHFGL+QLHQLRGRVGRG   +   LL   P    +  RLS L+       G
Sbjct: 824 NTILISGAEHFGLSQLHQLRGRVGRGGIRAYAYLLADTP-GDAAQKRLSALQELHFAGAG 882

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           F I+  DL  R  G++L  +Q+G     +  P L+  LL  A
Sbjct: 883 FQISARDLDLRGAGDLLSEQQAGH--VQVFGPALYQELLSRA 922


>gi|154175477|ref|YP_001407964.1| ATP-dependent DNA helicase RecG [Campylobacter curvus 525.92]
 gi|112803336|gb|EAU00680.1| molybdenum-pterin binding protein [Campylobacter curvus 525.92]
          Length = 604

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 176/626 (28%), Positives = 275/626 (43%), Gaps = 58/626 (9%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
            K    L+KI        T  +DL    P SF D      ++   +E  V I   I   S
Sbjct: 5   PKDRDELAKI------GVTSLLDLALTLPKSFED----TTLANEPKEGQVCIDVTIRSTS 54

Query: 81  SFQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
             + +      I   +     + ++ F  K       F  G+K+ +TG          ++
Sbjct: 55  --RARGGMLVAISFCEAWQSSVKIVIFNAK-PWHFGAFKVGKKMMITGVASHAFGAWQVI 111

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSF 199
           +P  I    +      I   Y     L  +  K ++ + ++   +  E +++   +    
Sbjct: 112 NPRIITKPGE------IVPKYRTT--LKDERLKTLVAKYINFEILTNEGLDE--REANFI 161

Query: 200 PSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
            S+  A           + +  S   + L + E+      L   +  FK +   P ++  
Sbjct: 162 LSLQNANERSV--EILNELKSKSEGLQTLKFIEIFNYIKKLSAKKIHFKSQKIAPFDIGE 219

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                 L+N+PF+PT  Q +AI DI  D++      R++ GDVGSGKTLV L A  +   
Sbjct: 220 W-----LKNLPFAPTNDQLNAINDIRTDLAHGEAKRRVVMGDVGSGKTLVILAAALSVYP 274

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
             G AV+MAP  IL +Q Y   K+       ++ + +G+          + +     + I
Sbjct: 275 --GCAVLMAPTSILCEQIYNEAKRLLPGFMNVMLVKSGD----------KNLDFSGVNFI 322

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH----VLLMTATPIPRTL 435
           IGTH L     +   + LV+VDEQHRFG  QR K+ Q           +  +ATPIPRTL
Sbjct: 323 IGTHVLLYQ--ELPPVPLVMVDEQHRFGSSQRGKIEQMTRNGDLHANFVQFSATPIPRTL 380

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            L     ++ S + + P   K IKT I+       ++  +K  +S G++   + P +E  
Sbjct: 381 SLIQSSLVEFSFLKQMPFE-KHIKTQILKPADFASLLAHIKAQISSGRQTIIVYPLVEGS 439

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           +  N++S+ E      ++F  ++ I HG   D +KE ++  FK     +L++TTV+EVGI
Sbjct: 440 ENLNYQSLSEAQGFWLQNF-KNVFITHG--KDREKEEILRQFKQ-RGDILLSTTVVEVGI 495

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
            +     I+I  AE  GLA LHQLRGRVGR      C L        N   RL    +T 
Sbjct: 496 SLPRLGTIVIVGAERLGLATLHQLRGRVGRNGGSGFCFLFTKLK---NPPERLVEFCSTT 552

Query: 616 DGFLIAEEDLKQRKEGEIL-GIKQSG 640
           DGF IA+ DLK R+ G+IL G  Q G
Sbjct: 553 DGFEIAQLDLKNRQSGDILNGTLQHG 578


>gi|57506018|ref|ZP_00371941.1| ATP-dependent DNA helicase RecG [Campylobacter upsaliensis RM3195]
 gi|57015626|gb|EAL52417.1| ATP-dependent DNA helicase RecG [Campylobacter upsaliensis RM3195]
          Length = 603

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 167/570 (29%), Positives = 270/570 (47%), Gaps = 48/570 (8%)

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAV 159
            ++L+FF+     +  VF  G  + ++GK+          +P  I          + E  
Sbjct: 73  SVSLVFFHFSKWHM-GVFKVGATLLLSGKLGFFNQSWQFYNPKII------KKAGIFEPK 125

Query: 160 YSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD-LLQKKSFPSIA-EAFNIIHNPRKAKD 217
           Y +  G+     + +I + ++      E +++  +  K  F  +   A+++       + 
Sbjct: 126 YQI-AGIKDSKIQDLINDYVNY-----ENLKESGIADKFIFLLLNLHAYDVKSF----EL 175

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQ 277
           F+      E L Y E+        L R + KK       ++    +K L+ +PFSPTK Q
Sbjct: 176 FKNLEHFLEDLKYIEIYNF-----LKRLKNKKNPSKAYKIKLFDIEKWLKTLPFSPTKDQ 230

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337
             AI DI +D+S++    R++ GDVG GKTLV L A  +      QA++MAP  ILA+Q 
Sbjct: 231 IQAICDIREDLSKEVAKRRVIMGDVGCGKTLVLLAAALSVYP--KQALLMAPTSILAEQL 288

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           +E  +K   +   I+ I  G        +   +     AH+IIGTHAL  +  + +K +L
Sbjct: 289 FEEAQKLLPDFLQILFIKGGKK------EKKIKEQIQNAHLIIGTHALIYE--ESFKAVL 340

Query: 398 VIVDEQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           V++DEQHRFG  QR K++  A+     PH +  +ATPIPRTL +     ++ S I + P 
Sbjct: 341 VMIDEQHRFGSNQRQKISTLASKEGLNPHFIQFSATPIPRTLSMIQSELLNFSFIKQMPF 400

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
            +K I T  +      ++  ++   +++  +   I P + E ++  + S+ E      + 
Sbjct: 401 -KKEISTYCVQNEDFAKIKAKIDEEIAQNHQIIIIYPLVSESEKIPYLSLDE-AKFYWQK 458

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              ++ + HG   D +K+ ++  FK     +L++TTV+EVGI +   S I+I  AE  GL
Sbjct: 459 HYKNVFVTHG--KDKEKDKILQEFKE-KGDILLSTTVVEVGISLPRLSTIVIVGAERLGL 515

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           A LHQLRGRVGR    S C L            RL       DGF IAE DLK R  G++
Sbjct: 516 ATLHQLRGRVGRVGLKSYCYLYTKLK---EIPQRLIEFSKILDGFKIAELDLKNRLSGDL 572

Query: 634 L-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
           L G  Q G  +F        + +L   ++D
Sbjct: 573 LDGYIQHGN-EFKFFNFANDEMILAKVKED 601


>gi|242310019|ref|ZP_04809174.1| ATP-dependent DNA helicase [Helicobacter pullorum MIT 98-5489]
 gi|239523316|gb|EEQ63182.1| ATP-dependent DNA helicase [Helicobacter pullorum MIT 98-5489]
          Length = 602

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 170/622 (27%), Positives = 286/622 (45%), Gaps = 59/622 (9%)

Query: 54  DRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEML 113
           D       SE+       +   + ++SSF++ K   Y   L D   EI L+ F  K    
Sbjct: 26  DYTNTIFSSELKINTQAVLAVEVLRYSSFKIAKVLCY-APLFDK--EIELVIFNAK-PYH 81

Query: 114 KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK 173
           K++F  G  + V+GK++   + + ++ P  +        FP+ +A      G  + L ++
Sbjct: 82  KSIFKIGENLVVSGKVQIQNSFVSLIQPKVLKQTGD--IFPIFKA-----QGSRITLLRE 134

Query: 174 IIVEALSRLPVLPEWI------EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARER 227
            +         LPE I       K++L+        +     +     K+  +   + E 
Sbjct: 135 FVKSL-----KLPEIIQAYPYVPKEILKHLLLIYQPDTSFFENF---KKNHGFFGASLEA 186

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           L + E+   +    L  K+ +     P+N + K  Q   RN+PF+ TK Q+ AI +I +D
Sbjct: 187 LKFIEI--YEYMRKLKAKKVEFLSICPLNGDFKKWQ---RNLPFALTKGQQMAILEIQKD 241

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           +       R++ GDVG GKT+V   ++  A     ++++M P  ILA+Q Y+  +K+   
Sbjct: 242 LDSNKAARRVIVGDVGCGKTMVIFASVLMAYP--KKSILMVPTSILAKQIYQESQKFLPK 299

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
             I V + T +        +           +IGTHAL     +     LV++DEQHRFG
Sbjct: 300 -HISVALWTQSSKIGDLESS---------DFVIGTHALLYR--ELKGFALVMIDEQHRFG 347

Query: 408 VQQRLKLTQKA----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             QR  L +        PH+L  +ATPIPRTL +     +D S I + P   K I + +I
Sbjct: 348 TAQRNTLERMMELEQRRPHILQFSATPIPRTLAMIESNFLDFSFIRDLPF-PKDITSWVI 406

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
                 E++  ++  +++  +   + P +EE+K +++  + +      +HF     I   
Sbjct: 407 SKQDFRELLAHIQREIAKKHQVLIVYPLVEERKSADYTPLKKGEEFWRKHFE---GIYVT 463

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
              D  KE V++ F++    +L+ATTV+EVGI + + S I+I  AE  GLA LHQLRGRV
Sbjct: 464 HGKDKYKEEVLEEFRD-KGNILLATTVVEVGISLPNLSTIVIVGAERLGLATLHQLRGRV 522

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSGMP 642
            R      C L      S+       +    ++GF IA+ DL+ R  G++L G +QSG  
Sbjct: 523 SRNGLKGYCFLYSKQEKSQRLMRFCQI----QNGFEIAQLDLEYRNSGDLLSGEQQSG-K 577

Query: 643 KFLIAQPELHDSLLEIARKDAK 664
           +F      L + ++  A++  K
Sbjct: 578 QFEWINLALDEKIIANAKEALK 599


>gi|313893259|ref|ZP_07826834.1| helicase C-terminal domain protein [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442155|gb|EFR60572.1| helicase C-terminal domain protein [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 321

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 133/287 (46%), Positives = 192/287 (66%), Gaps = 3/287 (1%)

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           +IIGTHAL Q+ + ++ L LVI+DEQHRFGV+QR +L QK T PHVL+MTATPIPRT+ L
Sbjct: 1   MIIGTHALIQEGVNFHNLGLVIIDEQHRFGVEQRARLQQKGTYPHVLIMTATPIPRTMTL 60

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +  GD+ +S I E P GRKP+KT  +  +  D +       ++EG++ Y +CP +EE ++
Sbjct: 61  SVYGDLAVSLIKEMPPGRKPVKTYAVDSSYKDRLRTFFGKEMAEGRQVYVVCPLVEESEK 120

Query: 498 SNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            + ++  E +  L E+F     + ++HGRM   +K+ VM++F NG   LL++TTVIEVG+
Sbjct: 121 LDLQAAEELYLELKEYFYKDYEVGLVHGRMKPSEKDEVMNAFHNGDISLLVSTTVIEVGV 180

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +V +A+I+ IE AE FGL+QLHQLRGRVGRG   S CIL+     +  S  RL +++ T+
Sbjct: 181 NVPNATIMCIEGAERFGLSQLHQLRGRVGRGSHQSYCILVSDSK-NDVSQERLKLMEQTQ 239

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
           DGF +AE+DL  R  G++ G+ QSG+P   +A       +L  ARKD
Sbjct: 240 DGFELAEQDLLLRGSGQLFGLAQSGLPDLRVANIIKDIEILVEARKD 286


>gi|237751094|ref|ZP_04581574.1| transcription-repair coupling factor [Helicobacter bilis ATCC
           43879]
 gi|229373539|gb|EEO23930.1| transcription-repair coupling factor [Helicobacter bilis ATCC
           43879]
          Length = 1042

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 127/418 (30%), Positives = 214/418 (51%), Gaps = 22/418 (5%)

Query: 237 QIALLLMRKQFKKEIGIPINVEGKI--AQKILRNIPFSPTKSQESAIKDILQDMSQKNRM 294
           +I  L  ++   K + I +    +I        +  F+ T+ Q  AI++ L+D+     M
Sbjct: 486 EIIRLQAQRTLAKGVKIELETPDQITAFNTFESSRGFTLTQDQTHAIQESLKDLKSGMIM 545

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII--- 351
            R+L GDVG GKT VA+    A+      ++++ P  +L  QH+E  K+   NT++    
Sbjct: 546 DRLLNGDVGFGKTEVAMSLCFASALNDFNSIVLVPTTLLCNQHFESFKERLHNTKLPNGK 605

Query: 352 ---VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGV 408
              +  I        +++A++        II+GTH+LF   I+   L L+++DE+H+FGV
Sbjct: 606 ILYIAKIDRFTTAT-QKRAIQENFKDNIQIIVGTHSLFNLEIE--NLGLMVIDEEHKFGV 662

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
           +Q+  L QK+   H+L M+ATPIPRTL +       IS++   P  ++  KT +  + + 
Sbjct: 663 KQKELLKQKSLTTHILSMSATPIPRTLNMAYSKLKSISELKTPPFFKQESKTFV-KVKQD 721

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
             + E +   L  G + ++I   I +             + L       I I+H +++  
Sbjct: 722 SLIKEVILRELRRGGQVFYIFNNIAKITTIQSY-----LHDLLPQL--RILILHSQINPK 774

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D E  M +F      LL+ T+++E GI + +A+ III++A +FG+A LHQLRGRVGRG+ 
Sbjct: 775 DTEKGMLAFLKKEYDLLLCTSIVESGIHLPNANTIIIDDAHNFGIADLHQLRGRVGRGKH 834

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           +  C LL +  +++++  RL  L+       G  +A  DL+ R  G +LG  QSG  K
Sbjct: 835 VGFCYLLTNENITQDAAKRLLSLEKNSYLGSGAALAYHDLEIRGGGNLLGEAQSGHIK 892


>gi|298708153|emb|CBJ30494.1| ATP-dependent DNA helicase RecG [Ectocarpus siliculosus]
          Length = 1002

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 154/435 (35%), Positives = 234/435 (53%), Gaps = 59/435 (13%)

Query: 284 ILQDMS-----QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           +L+DM         RM R+LQGDVGSGKT VA +AM  A   G Q+ ++AP  +L  QH 
Sbjct: 29  VLKDMEGSGSCSSLRMFRLLQGDVGSGKTAVAFLAMLRAAGQGSQSCMLAPTEVLTVQHL 88

Query: 339 EFIKKYTQ-------NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF-QDSI 390
           + ++   +          + VE++TG++    R++ L  +  G+  I++ THA+    S 
Sbjct: 89  QTLRSMAEGIERPDGKGNLRVELLTGSIKGKARQQLLNDVKSGEVDILVATHAVLTSAST 148

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            +  L L +VDE+ RFGV+QR KLT  A   HVL ++ATPIPR+L L   GD++IS+I E
Sbjct: 149 AFRDLGLAVVDEEQRFGVEQRDKLTGFA--QHVLYLSATPIPRSLTLALFGDMEISQIRE 206

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            P G   I+T +IP+ +  EV++RLK       K+       E     +  S  ER+++L
Sbjct: 207 MPRGTANIETTLIPVAKAKEVMDRLKGREDTDDKS-------ESSTRQHLASATERYDAL 259

Query: 511 HEHF-TSSIAIIHGRMSDIDKESVMDSFKNGT----CKLLIATTVIEVGIDVVDASIIII 565
            +      + ++HG+M+  +K   +  F  G      ++L++T++IEVG+DV  A + ++
Sbjct: 260 VKELGEDRVTLLHGKMTSAEKNKRLSEFSGGEKGKGLRVLVSTSIIEVGVDVPRAGVCVV 319

Query: 566 ENAEHFGLAQLHQLRGRVGRGEE------------------------------ISSCILL 595
           ENAE FGL+QLHQLRGR+GR +                                S CILL
Sbjct: 320 ENAEMFGLSQLHQLRGRLGRTDRGKRERSTTAPTGSLQQPASPEEDPSQDKRQTSHCILL 379

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK--FLIAQPELHD 653
           Y P +  ++  RL  ++ T DGFL+AE DL  R  GE+LG++Q G  +  F +A      
Sbjct: 380 YGPDVGNDATERLKAVRKTRDGFLLAERDLALRGPGEVLGMRQKGYIEGKFKVADLARQG 439

Query: 654 SLLEIARKDAKHILT 668
           SL E A K A+ ++ 
Sbjct: 440 SLAEHASKRARRLVE 454


>gi|218506884|ref|ZP_03504762.1| ATP-dependent DNA helicase RecG [Rhizobium etli Brasil 5]
          Length = 243

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 140/243 (57%), Positives = 185/243 (76%)

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           I+T+ +P+ R  E++ RL+  L+EGKKAYWICP +EE +E +  S  ER  +L       
Sbjct: 1   IQTITVPMERTGEIVGRLQSALAEGKKAYWICPLVEESEELDLMSAEERHATLVAALGPD 60

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I +IHGRMS  +K++ M +FKNG  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLH
Sbjct: 61  IGLIHGRMSGPEKDAAMMAFKNGETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLH 120

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG+E S+CILLY  PL +  + RLS+++ TEDGF IAEEDLK R EGE+LG +
Sbjct: 121 QLRGRVGRGDEASTCILLYKGPLGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTR 180

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFI 697
           QSG P F IA  E H  LLEIARKDA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+
Sbjct: 181 QSGTPGFRIASLEAHADLLEIARKDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFL 240

Query: 698 RAG 700
           RAG
Sbjct: 241 RAG 243


>gi|241518444|ref|YP_002979072.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862857|gb|ACS60521.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 1072

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 213/449 (47%), Gaps = 16/449 (3%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D   T+  + +           A  L++  K  +                  R  PF+ T
Sbjct: 476 DRLHTAAWQNKREKIAADIQSTARHLIKLAKHRQASRAEAFVPPRAGFSAFTRRFPFTET 535

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
             Q  AI+ +L D++    M R++ GDVG GKT +AL A AA   AGGQ V++AP  +L 
Sbjct: 536 HDQAEAIRSVLSDLATGRAMNRLVCGDVGFGKTEIALRAAAAVALAGGQVVVIAPTTVLT 595

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH+    +    T + V +++  +     +K    +A G+  +I+ T A+    +++  
Sbjct: 596 RQHFATFTRRFAGTGVSVGMLSRLLKPREAKKVKAALAVGEIGVIVTTQAILAKDVRFAH 655

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L LVIVDE+HRFG++++  +     + H L M+ATPIPRTL    +G  ++S +T  P  
Sbjct: 656 LALVIVDEEHRFGLKEKRAMNTLVPSLHTLAMSATPIPRTLQSAMVGVHEVSLLTTPPFR 715

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R+P++T +   +    +   L      G +++ + P+IE+               +    
Sbjct: 716 RRPVRTSLSVFDH-ASMRTGLMREKRRGGQSFVVVPRIEDIDVVKT-----ILRKIVPEL 769

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             S+ + HG M     +  +  F  G   +L+AT +IE G+DV  A+ + +  A+ FGLA
Sbjct: 770 --SVKVAHGDMPAAAIDEAIVGFAEGDGDVLLATNIIENGLDVPRANTMFVWQADRFGLA 827

Query: 575 QLHQLRGRVGRGEEISSCILLY-HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKE 630
           QLHQLRGRVGRG       LL  +  LS  +  RLS L   +    G  I+  DL  R  
Sbjct: 828 QLHQLRGRVGRGGAQGIATLLTENAELSDETRLRLSTLVENDRLGAGLSISLRDLDLRGG 887

Query: 631 GEILGIKQSGMPKFLIAQPELHDSLLEIA 659
           G+I G  Q+G     +    L+  LL  A
Sbjct: 888 GDIAGEDQAGHM--KVIGIGLYQKLLAGA 914


>gi|90418629|ref|ZP_01226540.1| putative transcription-repair coupling factor [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336709|gb|EAS50414.1| putative transcription-repair coupling factor [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 1128

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 145/466 (31%), Positives = 233/466 (50%), Gaps = 20/466 (4%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFS 272
              D +  +  + R      ++     ++ R   K E   P I  +    ++      + 
Sbjct: 522 TLDDLKGRTWQKRRDEIFGAISVTADRMVERLTEKAEAKAPKIVPDRVSFERFCARFAYE 581

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q +A  D+L D++    M R++ GDVG GKT VAL A AAAV +G Q  ++AP  +
Sbjct: 582 LTADQNNACLDVLDDLASGRPMERLVCGDVGYGKTEVALRAAAAAVFSGRQVAVIAPTTV 641

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LAQQH+           + +  ++  + +     A   +  G A I++GTHA+    + +
Sbjct: 642 LAQQHFREFSARFGAQGVEIVRLSRLVGKDEADAAKAAMQDGTAKIVVGTHAILSGDVAF 701

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             L LVI+DE+ RFG +Q+  +   A   H+L MTATPIPRTL    +G  D+S I   P
Sbjct: 702 DDLALVIIDEEQRFGSEQKAAMRTLADGVHILTMTATPIPRTLQSGFVGLSDLSIIATPP 761

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
             R P+KT + P +    V + L    + G +++ +CP+IE+ +             L E
Sbjct: 762 NRRSPVKTRVGPFDD-AAVRDALTAERARGGQSFVVCPRIEDLEPM--------AAKLQE 812

Query: 513 HFTSSIAI-IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                  + +HG+M   + E  M +F +G   +L+AT ++E G+DV +A+ +++ +A+ F
Sbjct: 813 LVPEQTTVTLHGKMKPDEVEDAMLAFAHGEHDVLLATAIVESGLDVANANTMVVCHADRF 872

Query: 572 GLAQLHQLRGRVGRGEEISSCILLY--HPPLSKNSYTRLSVLKNTE---DGFLIAEEDLK 626
           GLA+LHQLRGRVGRG      +L       L +++ +RL  L+       GF IA  DL 
Sbjct: 873 GLAELHQLRGRVGRGARRGHVLLTTEADRELGEHARSRLEALEEFSTLGAGFDIAARDLD 932

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            R  GE+LG +Q+G  + +     L+  +LE A   A+     +PD
Sbjct: 933 LRGTGELLGDEQAGHVQTI--GIGLYRKILERAVALAQG--QPEPD 974


>gi|294668402|ref|ZP_06733505.1| hypothetical protein NEIELOOT_00320 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309720|gb|EFE50963.1| hypothetical protein NEIELOOT_00320 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 385

 Score =  269 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 94/340 (27%), Positives = 164/340 (48%), Gaps = 13/340 (3%)

Query: 24  SLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQ 83
           +  L K+      N     DL+ + P  + D  +   I +        + G +  H    
Sbjct: 17  AKKLDKL------NLNTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVI-HQEVT 69

Query: 84  LQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHY 143
            + R+   + + D +G +  L F       +     G++I   G+IK       M+HP  
Sbjct: 70  FKPRKQLIVQIADDSGSVLFLRFIHFYASHQKQMAAGKRIRAVGEIKHGFYGDEMIHPKI 129

Query: 144 IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA 203
               S  +    +  +Y    GL+    ++II  AL   P L + +   LL +   P +A
Sbjct: 130 RDAESSGL-AESLTPIYPTVNGLNQPTLRRIIQTALDVTP-LHDTLPDALLGRLKLPHLA 187

Query: 204 EAFNIIHNPRKAKDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG 259
           E+  ++H+P  +      S    PA +RL +DELLA Q+++ L R++        +  +G
Sbjct: 188 ESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAAALGGDG 247

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q +   +PF+ T +QE  + +I +DM+Q + M R+LQGDVGSGKT+VA ++   A+E
Sbjct: 248 TLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIE 307

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           +G QA +MAP  ILA+QH+   K++ +   + V  ++G+ 
Sbjct: 308 SGAQAAVMAPTEILAEQHFIKFKQWLEPLGLEVVWLSGSQ 347


>gi|170738843|ref|YP_001767498.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168193117|gb|ACA15064.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 1098

 Score =  269 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 141/450 (31%), Positives = 222/450 (49%), Gaps = 15/450 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
            T   R       +      +L + +  ++     +    +  ++      F PT  Q +
Sbjct: 513 GTWATRRAGVEAAVAESARRMLALAEARRRATAPALVPPERQMERFGAGFGFPPTPDQAA 572

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  ++ D++    M R++ GDVG GKT VAL A AAA+ AG Q  + AP  +L +QH E
Sbjct: 573 AIDAVMADLAAGRPMDRLVCGDVGFGKTEVALRAAAAALFAGKQVAVAAPTTVLVRQHVE 632

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             ++      I+   ++  +P A  ++    +A G   ++IGTHAL    + Y  L LV+
Sbjct: 633 TFRRRFARFGIVPAQLSRLVPPAEAKRVRAGLADGSVRLVIGTHALAGRGLVYADLGLVV 692

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+ RFG  Q+ +L + A+  HVL +TATPIPRTL    +G  D+S I   P  R+PI+
Sbjct: 693 IDEEQRFGAAQKARLRRAASGAHVLTLTATPIPRTLQSALVGLQDLSVIATPPVVRRPIR 752

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           TV+ P +  + V   L      G +++ +CP+I +           R  ++      S+A
Sbjct: 753 TVVAPFD-PETVRAALTREHRRGGQSFVVCPRIADLAPME-----ARLRAIVPDL--SLA 804

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG M     +  M  F  G   +L+AT +IE G+DV  A+ +++ + E FGLAQLHQL
Sbjct: 805 VAHGEMPPAAMDEAMVRFAEGEGDVLLATNIIESGLDVPRANTMLVWHPERFGLAQLHQL 864

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLS-----VLKNTEDGFLIAEEDLKQRKEGEIL 634
           RGRVGRG+  ++  LL  P       +         L     GF ++  DL  R  G++ 
Sbjct: 865 RGRVGRGQRRAAAYLLTDPEAPPPPASEARLRALTALDRLGAGFALSARDLDLRGAGDLF 924

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           G +Q+G  K +         LLE A + A+
Sbjct: 925 GEEQAGHVKLIGLGLYRD--LLERAIRAAR 952


>gi|124262929|ref|YP_001023399.1| RecG-like helicase [Methylibium petroleiphilum PM1]
 gi|124262175|gb|ABM97164.1| RecG-like helicase [Methylibium petroleiphilum PM1]
          Length = 636

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 144/614 (23%), Positives = 275/614 (44%), Gaps = 45/614 (7%)

Query: 50  SSFIDRHYRPKISE--ISEERIVTITGY--ISQHSSFQLQKRRPYKILLN--DGTGE-IT 102
             +++  +   I++  I    ++T+T      + +      +R +++ +   DG G+ + 
Sbjct: 28  RDYLEPMHVLPIADTGIKVYMVLTLTDRTLFDRTNMPTSNWKRGWRLAMRGVDGRGQGVD 87

Query: 103 LLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL 162
           +  F      ++  F  G ++ + G++   K ++ + +P  +    +      I  +Y+ 
Sbjct: 88  ITVFGSYFPWME--FQPGDELHLYGQVTTFKGKLQIGNPDLVLPEQR----GRIVPIYAG 141

Query: 163 PTG-LSVDLFKKIIVEALSRLP------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKA 215
             G +S D   K +  ALS +       +    + +   ++++          +H P+  
Sbjct: 142 KPGQVSGDSLAKGVAGALSSINEAACMLLAQSGMREAEFRRRAGMEPEMLLASLHTPKST 201

Query: 216 KDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275
           ++ E  +     +A +  LA  +      +         + ++    Q +   +PFS T 
Sbjct: 202 REGEMAAK----VATELSLAAILGRAARNQSAAPVTESALPIDRAAIQALCARLPFSLTG 257

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335
            Q  AI +++ D+     M R+L GDVG+GK++V ++   AA  AG +  I+ P  +L +
Sbjct: 258 DQAKAIDEVVGDLRAPFPMRRLLSGDVGTGKSIVFMVPAVAAFNAGARVAIVVPNQLLVE 317

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY-K 394
           Q    ++ Y     +  E+ +G    +               +++GT A+   + ++  +
Sbjct: 318 QIAGELRAYYPEIPVQ-EVTSGAQIGSS--------------LVVGTSAVIHAARKHKLE 362

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
             LVIVDEQH+F V+Q+  L    T  + L  TAT IPRTL L   G + +S + E P  
Sbjct: 363 FDLVIVDEQHKFSVEQKDALRVART--NFLEATATAIPRTLALVGFGGMAVSVLRELPV- 419

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            K I T I+       + + +   ++ G +   I P  E+  +    SV   F      +
Sbjct: 420 VKKIATRIVEKADGARLFDFVHAQIAAGGQVAVIYPLAEDMGDGERASVEAAFERFKARY 479

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
                ++HG++SD +K +V++  ++G   LL+++TVIEVG+ +     +++ + E FG++
Sbjct: 480 GDRAGMLHGKLSDDEKAAVINKMRDGELSLLVSSTVIEVGVTLPSLRALVVVHPERFGVS 539

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           QLHQLRGRV R        L     +   +  RL +L    DGF +AE D   R  G + 
Sbjct: 540 QLHQLRGRVARKGGSGYFFLYLPAEVEDMAMQRLELLVECSDGFTLAERDADLRGFGNVD 599

Query: 635 --GIKQSGMPKFLI 646
             G  Q+G  + L 
Sbjct: 600 AGGDAQTGSSRLLF 613


>gi|34556787|ref|NP_906602.1| ATP-dependent DNA helicase RecG [Wolinella succinogenes DSM 1740]
 gi|34482502|emb|CAE09502.1| ATP-DEPENDENT DNA HELICASE EC 3.6.1 [Wolinella succinogenes]
          Length = 605

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 171/652 (26%), Positives = 275/652 (42%), Gaps = 64/652 (9%)

Query: 30  IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP 89
           ++     +    +D     P  + DR      SE+       +   I        + R  
Sbjct: 6   LLKLSKLHCKDALDFALLAPKGYEDRR---PSSELVSGAEGVVE--IETLEFSLQKGRAR 60

Query: 90  YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ 149
               L        L+ F+  ++    +F    +  V  K+++   ++I++ P       +
Sbjct: 61  GLAWLERFKERAELIIFH-PSKYHHALFAPKERFFVKAKVERRFGKLILIQPQ------K 113

Query: 150 DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209
                 I   +S     +     ++    LS+  ++   I      +            +
Sbjct: 114 LAKIGEILPKFSTKVFKNQ-TLIELASRVLSKESLIALGIPALYASR---------LCEL 163

Query: 210 HNPRK------AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQ 263
             P         ++       +E L + E+     AL+  ++ F+      +        
Sbjct: 164 FFPDDSFLRRYQQERGIPKEHQEALKFAEIFRHLRALVGKKRSFE-----ALCRCQNAPW 218

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
             + ++PF  T  Q+ AI  I +D+S      RI+ GDVG GKTLV L A   A     Q
Sbjct: 219 PFVDSLPFPLTSGQKEAIGAIWRDLSSSKAARRIIMGDVGCGKTLVILAAAYMAYP--KQ 276

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AV+MAP  ILA+Q Y   K++      I  ++      +            +A+++IGTH
Sbjct: 277 AVLMAPTTILAEQLYAEAKRFLPAHFKIALVMQERSSDSL-----------EANLLIGTH 325

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-----TQKATAPHVLLMTATPIPRTLVLT 438
           AL    +    L++  +DEQHRFG  QR  L      ++   PHVL  +ATPIPRTL + 
Sbjct: 326 ALLYRKLDQAALVM--IDEQHRFGTAQRSTLERSLSDERGHRPHVLQFSATPIPRTLAMI 383

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               ID + I + P   K I T +I       ++  L   +++GK+A  I P +EE +  
Sbjct: 384 ESNLIDFTFIRDIPF-PKDITTRVIAKGDFPALLSHLAQEIAQGKQAAIIYPLVEESENL 442

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           ++ S+ E      + F     +      D +KE+V++ F+    K+L+ATTV+EVGI + 
Sbjct: 443 DYLSLKEGEAFWRKRFE---GVYVTHGKDREKEAVLEEFRE-KGKILLATTVVEVGISLP 498

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             S I+I  AE  GLA LHQLRGRV R      C L  H      +  RL    +T DGF
Sbjct: 499 KLSTIVIVGAERLGLATLHQLRGRVSRNGLKGYCFLYTHHK----ASKRLDDFASTLDGF 554

Query: 619 LIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
            IAE DLK R+ G+++ G +QSG   F    P     LL+ A+      + +
Sbjct: 555 EIAELDLKYRQGGDLVGGGRQSGE-SFTYFDPSCDQELLQEAQAILNAQVKR 605


>gi|78776607|ref|YP_392922.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78497147|gb|ABB43687.1| ATP-dependent DNA helicase RecG [Sulfurimonas denitrificans DSM
           1251]
          Length = 604

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 175/658 (26%), Positives = 285/658 (43%), Gaps = 73/658 (11%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           V K+      K+     +  +  I      PS + D       +++S   +  I   +  
Sbjct: 3   VTKEQKEKFKKLGISSCSELSLII------PSLYEDLRLS---NKLSPHSMQLIDATV-- 51

Query: 79  HSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
            + ++          +++ +  +T + F R    L + F  G++    G ++       +
Sbjct: 52  EAIYRAPNSLQITFFVHNFSHTVTGVIF-RPKPYLLHQFKVGQRDYYYGMMECKGGTCSI 110

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKS 198
             P  I           I   Y   + L  D+  + +   L++  +L + + +D+  +  
Sbjct: 111 NMPKKITI------IGAITPKY--KSALRSDVMLRFVQNLLTKENLLLDGLREDVACE-- 160

Query: 199 FPSIAEAFNIIHNPRK--AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
                     +H P+       E        L Y EL      L   R+         ++
Sbjct: 161 -------LLKLHFPQSVIPNIKELDEKILRALKYTELFVYMRELAKKRR-----YYPSLS 208

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +  K   + L+ +PF  T  Q  AI+DI  D  +     R++ GDVGSGKT+V L +   
Sbjct: 209 LTCKSYDEWLQTLPFRLTNEQIKAIEDIRADFQKGLSARRMIVGDVGSGKTMVILASAL- 267

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
            + +  ++++MAP  ILA Q YE  KKY     I        +   ++   L      + 
Sbjct: 268 -MNSPNRSILMAPTTILANQIYEEAKKYLPMMNI------ALVSSKNKNMDLS-----EY 315

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL-----------TQKATAPHVLL 425
             IIGTHAL    +    L++  VDEQHRFG  QR  L                  H L 
Sbjct: 316 DFIIGTHALLYRELPIATLVM--VDEQHRFGTAQRNLLEKLVSSQNSSSKISDAKSHFLQ 373

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
            +ATPIPRT  +  +  ID+S IT  P  +K IK+ +I  +   E++E +KV ++ G + 
Sbjct: 374 FSATPIPRTQAMIEMAHIDVSLITSTPF-KKEIKSRVIHKSDFKELLEHIKVEIALGNQV 432

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             + P +E+ +   ++S+ E   S  E   +++ + HG+  D DKE V+  F +    +L
Sbjct: 433 LLVYPLVEQSEVLEYQSIDE-ARSFWEARFTNVHVTHGK--DKDKEEVLREF-DKQGDIL 488

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           IATTV+EVGI +   S ++I  AE  GL+ LHQLRGRV R      C L  +   S    
Sbjct: 489 IATTVVEVGISLSRLSTVVIVGAERLGLSTLHQLRGRVSRTGLKGYCFLYTNQNKS---- 544

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKD 662
            RL    +T  GF IA  DLK RK G++L G  QSG  +F        + ++++ + D
Sbjct: 545 ERLDKFVDTTSGFDIANLDLKFRKSGDLLRGHNQSGN-QFRWVDLAEDEEIVKLVKDD 601


>gi|154147980|ref|YP_001406586.1| ATP-dependent DNA helicase RecG [Campylobacter hominis ATCC
           BAA-381]
 gi|153803989|gb|ABS50996.1| ATP-dependent DNA helicase RecG [Campylobacter hominis ATCC
           BAA-381]
          Length = 611

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 177/656 (26%), Positives = 280/656 (42%), Gaps = 60/656 (9%)

Query: 21  KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80
           +K    L+K+        +  +DL    P SF D   + + +E   +  V I     Q  
Sbjct: 6   EKDCKKLAKM------GVSSLLDLALILPKSFDDLSVKNEPNE--GDNTVEIETKTLQSR 57

Query: 81  SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
           +F L               +I +  F  +       F +G+K  + GK          ++
Sbjct: 58  NFIL----NITAFCYTWNCDIKITIFNARA-WHFGAFKKGKKFFIHGKSNFNFGFWQFIN 112

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFP 200
           P  +           I   Y L   L     ++I+ + ++   ++ E + +  ++     
Sbjct: 113 PKIV------TKIGEISPHYKL--DLKDASVQEILKKYINYDALIQEGLNE--VEANFII 162

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260
            I +        +  K+ +     R+ L++ E+ +  +  L  +K         +     
Sbjct: 163 QIHKNSQNSV--KIIKNLDLNEKDRKILSFIEIFSY-LKKLRAKKLDFPCKNFALTDISA 219

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
                +  +PF PT  Q+ AI DI  D+S      R++ GDVGSGKTLV L A   A+  
Sbjct: 220 W----ISKLPFKPTNDQQKAIDDIKNDLSSPIASKRVIMGDVGSGKTLVILAA---ALMN 272

Query: 321 GGQAV-IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
             Q   +MAP  ILA+Q +   K+   +    + + +G             +    A+++
Sbjct: 273 YPQISYLMAPTSILAEQIFNEAKRLLPDFMNTILVKSGEKT----------LNLNGANLV 322

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL----TQKATAPHVLLMTATPIPRTL 435
           IGTHAL   ++    L++  VDEQHRFG  QR K+           + L  +ATPIPRTL
Sbjct: 323 IGTHALLYHNLAKSNLVM--VDEQHRFGSNQRDKIAELTKDGKYRANFLQFSATPIPRTL 380

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +     +  S + + P  +K I+T II  N   E++  +K  +S G++   + P +EE 
Sbjct: 381 SMIQSEYVSFSFLKQMPF-KKDIRTTIIQNNGFSELLRHIKSEISNGRQVIIVYPLVEES 439

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           + S ++S+ E  +   + F  ++ I HG+  D             +  LL+ TTV+EVGI
Sbjct: 440 QTSIYQSLDEGTSFWQKRF-KNVMITHGKDKDK---DKKLEIFRDSGSLLLTTTVVEVGI 495

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
            +   SII+I  AE  GLA LHQLRGRVGR   I  C L Y    S     RL     T 
Sbjct: 496 SLPRLSIIVIVGAEKMGLASLHQLRGRVGRNGGIGYCYL-YTKLESIP--ERLKEFAATL 552

Query: 616 DGFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           DGF +AE DLK R+ G++L G  Q G   F     +   +L    R     I   D
Sbjct: 553 DGFKVAEIDLKNRQAGDLLDGTIQHGE-TFNYFDYDEDIALKAKERLKKFKISQND 607


>gi|294668401|ref|ZP_06733504.1| hypothetical protein NEIELOOT_00319 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309719|gb|EFE50962.1| hypothetical protein NEIELOOT_00319 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 295

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 132/288 (45%), Positives = 177/288 (61%), Gaps = 3/288 (1%)

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +IVDEQHRFGV QRL L  K    H L+M+ATPIPRTL ++   D+D+S I E P GR P
Sbjct: 1   MIVDEQHRFGVAQRLALKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTP 60

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS- 516
           IKT ++   R  EV   +  +  +G++AYW+CP IEE +    ++  E    L       
Sbjct: 61  IKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIEESETLQLQTATETLEQLQAALPEL 120

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
           +I ++HGRM   +K  VM  F  G   +L+ATTVIEVG+DV +A++++IE+AE  GLAQL
Sbjct: 121 NIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMGLAQL 180

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG   S C+LL+  PLS+ +  RL V+    DGF IA +DL  R  GE LG 
Sbjct: 181 HQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGA 240

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           +QSG+P    A  E    LLE AR+ A  ++ Q+P++  V     R L
Sbjct: 241 RQSGVPMLRFANLEEDLYLLEQAREIAPMLIEQNPEI--VEAHLARWL 286


>gi|148252654|ref|YP_001237239.1| putative transcription repair coupling factor [Bradyrhizobium sp.
            BTAi1]
 gi|146404827|gb|ABQ33333.1| putative transcription repair coupling factor [Bradyrhizobium sp.
            BTAi1]
          Length = 1159

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 136/442 (30%), Positives = 213/442 (48%), Gaps = 14/442 (3%)

Query: 221  TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESA 280
            +   R   A  E+      L    +Q ++     +       +K +   P+  T  Q  A
Sbjct: 585  SWRPRRAAAETEIHVVAKELAKQMRQRRRRPAPKLVPRPAAYEKFVARFPYFTTPDQAKA 644

Query: 281  IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
            I+D+L D++  + M RI+ GDVG GKT VAL A AAAV AG Q  I+ P  +LA+QH+E 
Sbjct: 645  IRDVLDDLASGHPMDRIVCGDVGFGKTEVALRAAAAAVLAGKQVAIVVPTTVLARQHFET 704

Query: 341  IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400
             +K        V  ++     A  R   ER+  G+  I++GT +L    +++  L L+I+
Sbjct: 705  FRKRFAPLGFDVGNLSRVASAADARDVRERLKSGELRIVVGTLSLASKEVKFADLGLIII 764

Query: 401  DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
            DE+  FG  ++  L+      H L M+ATPIPRTL     G  D+S I   P  R P+ T
Sbjct: 765  DEEQHFGAAEKAMLSNLNKNGHRLWMSATPIPRTLAAGLTGLRDLSVIATPPVHRVPVAT 824

Query: 461  VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
             + P++ I  +   L        +++ ICP+I++        ++ + ++L       I  
Sbjct: 825  KVAPLSDIA-IAAALVREHRRNGQSFVICPRIQDLD-----PLLAKVHALVPEL--RINT 876

Query: 521  IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            IHG++   + +  +  F  G   +L+AT ++E G+D+  A+ I++   E FGLAQLHQLR
Sbjct: 877  IHGKLPTDEIDERLMGFVEGRTDVLLATNIVESGLDIPRANTIVVCWPEKFGLAQLHQLR 936

Query: 581  GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIK 637
                    I +         S  S  RLSVL+       GF I+  DL  R  G++   +
Sbjct: 937  -GRVGRGGIRAFAHFLTEGGSDRSEKRLSVLEELSRPGAGFAISARDLDLRGGGDLRSDR 995

Query: 638  QSGMPKFLIAQPELHDSLLEIA 659
            QSG     +  P L+  LL +A
Sbjct: 996  QSGHM--QVFGPTLYGHLLTLA 1015


>gi|322380295|ref|ZP_08054511.1| DNA recombinase RecG [Helicobacter suis HS5]
 gi|321147278|gb|EFX41962.1| DNA recombinase RecG [Helicobacter suis HS5]
          Length = 613

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 170/642 (26%), Positives = 272/642 (42%), Gaps = 67/642 (10%)

Query: 38  ETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDG 97
            T F++LL   P S+        +  +    +  +           + K    KI  +  
Sbjct: 9   LTSFLELLLNPPKSY---TPYCVLENLEPGALGCLEV-----DYINMHKGHVLKINTHVK 60

Query: 98  T--GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR--IIMVHPHYIFHNSQDVNF 153
           T    + L+ F   T      F + +   V GK+        + M++P  I   +     
Sbjct: 61  TTGQVLELVCFN-YTPYHTKHFSQ-KSYFVYGKLSLNPYTQVLQMINPKIITQPNTITLH 118

Query: 154 --PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA-------- 203
                + + S         +K      L             +L   +   +         
Sbjct: 119 FDRACQKIASFNQ---QRQYKTYKDYCL------------SILTPYNLHKLTALGVSVEM 163

Query: 204 -EAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR---KQFKKEIGIPINVEG 259
            E+ +++  P      +  S        + L   +    ++    K F        +   
Sbjct: 164 IESLHMLFYPTLEFALDHASKGLHGKYLESLKCIEAMAYMLALSGKTFHAPSKFSGHANV 223

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           +  Q+ L  +PF+ T  Q+ AI  I QD+  K    R++ GDVGSGKT+V L ++  A+ 
Sbjct: 224 QALQEFLDKLPFTLTPDQQKAISSIKQDLQGKVATKRLIMGDVGSGKTMVILASV--ALA 281

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +  ++++MAP  ILA+Q Y    K+   + I   ++ G   +  ++   E         I
Sbjct: 282 SPYKSLLMAPTSILAKQIYTEALKFLPPS-IKPLLLLGGWSKKVQKSIDEATF------I 334

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPRTL 435
           +GT  L    +   ++ LV+ DEQHRFG +QR  L   AT     PH L  +ATPIPRTL
Sbjct: 335 VGTTTLLYTPLDTSQVALVLSDEQHRFGTKQRHALQTLATHATGKPHYLQFSATPIPRTL 394

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +     +  S + +KP   K IKT II      +++E ++  + + ++   I P +EE 
Sbjct: 395 AMMGAKFVATSLLRDKPY-HKDIKTHIIGKKDFTKLLEHIQEQIVQDRQVAIIYPLVEES 453

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           ++ N+ S+ E      + F   + ++ G+    DKE +M++F     ++L+ATT+IEVGI
Sbjct: 454 QKMNYLSLKEGAPYWQKRF-EKVCVVSGKHK--DKEEIMETF-AKEGQILLATTLIEVGI 509

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
            +   S III   E  GLA LHQLRGRV R      C L  H   +    TRLS    T 
Sbjct: 510 SLPKLSTIIIVGPERLGLATLHQLRGRVARLGGEGYCYLFTHQSNN----TRLSDFSQTL 565

Query: 616 DGFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLL 656
           DGF IA  DLK R  G++L G +QSG   F          L+
Sbjct: 566 DGFEIANLDLKYRHSGDLLHGKEQSGN-HFNFLDLSEDQHLI 606


>gi|237751833|ref|ZP_04582313.1| ATP-dependent DNA recombinase RecG [Helicobacter bilis ATCC 43879]
 gi|229373199|gb|EEO23590.1| ATP-dependent DNA recombinase RecG [Helicobacter bilis ATCC 43879]
          Length = 614

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 188/656 (28%), Positives = 283/656 (43%), Gaps = 78/656 (11%)

Query: 44  LLFY----HPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKI--LLNDG 97
           LL Y     P S+        I+E S+     +   I+Q    +        I     D 
Sbjct: 4   LLSYCLDNIPKSYD---TTYPITEFSQGERGVLEVTITQ----KRFHNNILFIESFCKDF 56

Query: 98  TGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII-MVHPHYIFHNSQDVNFPLI 156
              + ++ F  +      +F E + + V G ++   +++   + P ++         P I
Sbjct: 57  NSPLRIIIFNAR-PYHAQIFQETKTLFVLGTLEFQHDKMTNALTPTFV--------NPKI 107

Query: 157 EAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
                    +++    +    A  +  +  E +E   + ++     ++    I +P    
Sbjct: 108 P---RTTNTITMQFKTRTTKLADLQKHITKEALENTHIPQQ----YSDKLYRIFHP---- 156

Query: 217 DFEWTSPARERLA-----YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           D E+     +  A      + L   +I +   R + KK             +  L+ +PF
Sbjct: 157 DLEFFKEYSKEKALPESFQEALKFIEIFVYTQRLRKKKTQFRSKFRCNGDLESFLKTLPF 216

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
           S T +Q+ AIKDI +D+  +    RI+ GDVG GKT+V L ++  A     ++++MAP  
Sbjct: 217 SLTNAQKEAIKDIQEDLKNEFACRRIVMGDVGCGKTMVILASVILAYPQ--KSILMAPTT 274

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           ILA+Q +E  KKY      I  + + N     R+K LE         IIGTHAL   S  
Sbjct: 275 ILAKQLFEEAKKYLPKHINISFVSSSN--AKERKKPLEG------DFIIGTHALLYRSGD 326

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQK--------ATAPHVLLMTATPIPRTLVLTSLGDI 443
                LV+ DEQHRFG   R KL Q          T PH +  +ATPIPRT+ +     +
Sbjct: 327 LTDFALVMTDEQHRFGTNARSKLEQMLEGKDEHGRTKPHNIQFSATPIPRTMAMLKNNVV 386

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
             S I E P  +K I T II  +    +IE ++  L++G +   I P+IEE  ES  + +
Sbjct: 387 SFSFIKELPF-KKDIDTRIIDKSGFQRLIEHIRTELTKGHQIAIIYPRIEEADESKEKPI 445

Query: 504 VE------------RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +               S        +   HGR  D +KE V++ F N    +L+ATT+I
Sbjct: 446 KDSRYAPIPYMSLKDAESYWIKHFQHVFSTHGR--DKEKEDVLEQFANTESAILLATTMI 503

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           EVGI +   SII+I  AE  GLA LHQLRGRV R      C L  H    +    RL   
Sbjct: 504 EVGISLPKLSIIVIVGAERLGLASLHQLRGRVSRNGLKGYCYLYTH----QIQNERLIRF 559

Query: 612 KNTEDGFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
             T +GF IAE DL+ R  G++L GI QSG  +F          +LE A      I
Sbjct: 560 SKTLNGFDIAELDLEYRNSGDLLDGILQSG-AQFRYFDLSTDSKILEEANALLDRI 614


>gi|118474124|ref|YP_891808.1| ATP-dependent DNA helicase RecG [Campylobacter fetus subsp. fetus
           82-40]
 gi|261886450|ref|ZP_06010489.1| ATP-dependent DNA helicase RecG [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|118413350|gb|ABK81770.1| ATP-dependent DNA helicase RecG [Campylobacter fetus subsp. fetus
           82-40]
          Length = 602

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 180/628 (28%), Positives = 268/628 (42%), Gaps = 56/628 (8%)

Query: 32  NCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYK 91
           +  +      +DL    P S+ D       +E   E  V I       + F  +      
Sbjct: 9   DLKSIGINSLLDLALMLPKSYDDLSISHTPNE--GENSVEIE------TKFSKRIGSMLT 60

Query: 92  ILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQ 149
           +     T +  I L+ F  K       F  G+ + +  K          ++P  +     
Sbjct: 61  VTACCITWQCDIRLVIFNAKPWHYM-AFKSGKTMFIHAKSSFSYGSWQFINPKVV----- 114

Query: 150 DVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNII 209
                 I   Y     ++    +K+I + L+   +  E +  DL + K+  SI E     
Sbjct: 115 -TKVGSIIPHYKT--DITDAKLEKLIKKYLNLKNLTDEGL--DLKEAKTLLSIHENSKNS 169

Query: 210 HNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI 269
              +   + +        L + E+      L   + QF      P N++       L ++
Sbjct: 170 T--KIIANLQNDPSTLRVLKFVEIYNYIKKLSSKKSQFPGVRIKPFNIDSW-----LESL 222

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP 329
           PF PT  Q +AIKDI  D+SQ     R++ GDVGSGKTLV L A          AV+MAP
Sbjct: 223 PFKPTNDQLAAIKDIKNDISQNIAAKRVIMGDVGSGKTLVMLAAALMIYP--KPAVLMAP 280

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             ILA Q Y   K+   +    V +  G           + +    A++IIGTH L   S
Sbjct: 281 TSILADQLYSEAKRLLPSFYNTVLVKKGA----------KNVDFSDANLIIGTHVLLYQS 330

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKL----TQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +    L++  VDEQHRFG  QR K+           H L  +ATPIPRTL L     +  
Sbjct: 331 LPQSPLVM--VDEQHRFGSNQRKKIDELTRDFDKRAHFLQFSATPIPRTLSLIESQIVSF 388

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           S + E P  +K I T+I+  +    ++E LK  + + ++A  + P +EE + S+++S+ E
Sbjct: 389 SFLKEIPY-KKNIHTIILQNSGFSGLLEHLKNEIQKNRQAIIVYPLVEESEMSSYQSLSE 447

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
             +   E     + + HG   D DKE  +  F      +L+ TTV+EVGI +   S I+I
Sbjct: 448 -ASGFWESRFEKVYLTHG--KDRDKEDTLKKFAY-DGNILLTTTVVEVGISLPKLSTIVI 503

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
             AE  GLA LHQLRGRVGR      C +  +  L       L     T DGFL+A+ DL
Sbjct: 504 VGAERLGLATLHQLRGRVGRNGGEGWCYI--YTKLKDPPNRLLE-FSRTLDGFLVAKLDL 560

Query: 626 KQRKEGEIL-GIKQSGMPKFLIAQPELH 652
           K R+ G++L G  Q G   F     E  
Sbjct: 561 KNRQAGDVLDGTLQHG-ATFNYYDMEED 587


>gi|108864447|gb|ABA94063.2| CarD-like transcriptional regulator family protein, expressed
           [Oryza sativa Japonica Group]
          Length = 803

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 128/471 (27%), Positives = 229/471 (48%), Gaps = 57/471 (12%)

Query: 196 KKSFPSIAEAFNIIHNPRKAKDF-EWTSPARERLA---YDELLAGQIALLLMRKQFKKEI 251
           + + P      +    PR      + ++  + RL      + +   +  L +++  +K  
Sbjct: 207 RYNLP------HEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKRP 260

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM-SQKNRMLRILQGDVGSGKTLVA 310
             P  V      +     P+ PT  Q  A  D+ +D+  ++  M R++ GDVG GKT VA
Sbjct: 261 PYPKPV---GMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVA 317

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALE 369
           + A+   + AG QA+++AP  ILA+QHY+ + +   N   I V + +G   +  + + + 
Sbjct: 318 MRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELIT 377

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           +I +G  HII+GTHA+  + + Y  L L++VDE+ +FGVQQ+ K+     +  VL ++AT
Sbjct: 378 KIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSAT 437

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PIPRTL L   G  D S ++  P  R  ++T +   ++ +  +  +K  L+ G + +++ 
Sbjct: 438 PIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSK-ERALSAIKFELARGGQVFYVV 496

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           P+I        +++ +    L +      +A+ HG+    + +  M+ F  G  K+L+ T
Sbjct: 497 PRI--------KAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCT 548

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            +IE GID+ +A+ ++++ AE FGLAQL+Q                            RL
Sbjct: 549 HIIESGIDIPNANTMVVQYAELFGLAQLYQ---------------------------DRL 581

Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             ++   D   GF +AE+D+  R  G + G +QSG         +L   +L
Sbjct: 582 GAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSG--DVANVGIDLFFDML 630


>gi|115448235|ref|NP_001047897.1| Os02g0710800 [Oryza sativa Japonica Group]
 gi|41052646|dbj|BAD07494.1| ATP-dependent DNA helicase RECG-like [Oryza sativa Japonica Group]
 gi|41052862|dbj|BAD07776.1| ATP-dependent DNA helicase RECG-like [Oryza sativa Japonica Group]
 gi|113537428|dbj|BAF09811.1| Os02g0710800 [Oryza sativa Japonica Group]
 gi|215764974|dbj|BAG86671.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 410

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 141/402 (35%), Positives = 222/402 (55%), Gaps = 36/402 (8%)

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT-----QIIVEIITGNMPQAHRRKALE 369
              + +G QA  M P  +LA QHYE +    +       +  + ++TG+      R    
Sbjct: 1   MEVISSGFQAAFMVPTEVLALQHYEHLTSLLEKFDGDECKPNIALLTGSTSTRESRIIRN 60

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL--------------- 414
            +  G+  ++IGTH+L  D  ++  L + ++DEQ RFGV QR +                
Sbjct: 61  GLKTGEIAMVIGTHSLIGDKTEFSALRISVIDEQQRFGVVQRGRFNSKLYTPSTKSSDDD 120

Query: 415 --------TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                   ++   APHVL M+ATPIPRTL L   GD+ +++IT+ P GR+PI+T+ +  N
Sbjct: 121 TISDENSASEIFMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRQPIETLALEGN 180

Query: 467 R--IDEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFT-SSIAIIH 522
               + V + +   L +G K Y + P IEE ++     +    F+S+ + F      ++H
Sbjct: 181 DAGFESVFQMMSDELVDGGKVYLVYPIIEESEQLPQLHAAKAEFDSIKQKFEGYPCGLLH 240

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           GRM   +K+  + SF++G  ++L++T VIE+G+DV DAS++++ NAE FG++QLHQLRGR
Sbjct: 241 GRMRSDEKDGALSSFRSGETRILLSTQVIEIGVDVPDASMMVVMNAERFGMSQLHQLRGR 300

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-M 641
           VGRGE  S C+ L   P   ++  RL VL+ + DGF +A  DL  R  G++LG KQSG +
Sbjct: 301 VGRGERKSRCVFLCSTP---SALPRLKVLEKSSDGFYLANADLLLRGPGDLLGKKQSGHL 357

Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           P+F IA+ E+  S+L+ A   A ++L    DL    G  + +
Sbjct: 358 PEFPIARLEIDGSILQEAHLAALNVLGTSNDLAQFPGLKVEL 399


>gi|322379509|ref|ZP_08053874.1| DNA recombinase (recG) [Helicobacter suis HS1]
 gi|321148064|gb|EFX42599.1| DNA recombinase (recG) [Helicobacter suis HS1]
          Length = 613

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 174/644 (27%), Positives = 274/644 (42%), Gaps = 71/644 (11%)

Query: 38  ETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDG 97
            T F++LL   P S+        +  +    +  +           + K    KI  +  
Sbjct: 9   LTSFLELLLNPPKSY---TPYCVLENLEPGALGCLEV-----DYINMHKGHVLKINTHVK 60

Query: 98  T--GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR--IIMVHPHYIFHNSQDVNF 153
           T    + L+ F   T      F + +   V GK+        + M++P  I   +     
Sbjct: 61  TTGQVLELVCFN-YTPYHTKHFSQ-KSYFVYGKLSLNPYTQVLQMINPKIITQPNTITLH 118

Query: 154 --PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA-------- 203
                + + S         +K      L             +L   +   +         
Sbjct: 119 FDRACQKIASFNQ---QRQYKTYKDYCL------------SILTPYNLHKLTALGVSVEM 163

Query: 204 -EAFNIIHNPRKAKDFEWTSP-----ARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
            E+ +++  P      +  S        E L   E +A  +   L  K F        + 
Sbjct: 164 IESLHMLFYPTLEFALDHASKGLHGKYLESLKCIEAMAYIL--ALSGKTFHAPSKFSGHA 221

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
             +  Q+ L  +PF+ T  Q+ AI  I QD+  K    R++ GDVGSGKT+V L ++  A
Sbjct: 222 NVQALQEFLDKLPFTLTPDQQKAISSIKQDLQGKVATKRLIMGDVGSGKTMVILASV--A 279

Query: 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
           + +  ++++MAP  ILA+Q Y    K+   + I   ++ G   +  ++   E        
Sbjct: 280 LASPYKSLLMAPTSILAKQIYTEALKFLPPS-IKPLLLLGGWSKKVQKSIDEATF----- 333

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIPR 433
            I+GT  L    +   ++ LV+ DEQHRFG +QR  L   AT     PH L  +ATPIPR
Sbjct: 334 -IVGTTTLLYTPLDTSQVALVLSDEQHRFGTKQRHALQTLATHATGKPHYLQFSATPIPR 392

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL +     +  S + +KP   K IKT II      +++E ++  + + ++   I P +E
Sbjct: 393 TLAMMGAKFVATSLLRDKPY-HKDIKTHIIGKKDFTKLLEHIQEQIVQDRQVAIIYPLVE 451

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           E ++ N+ S+ E      + F   + ++ G+    DKE +M++F     ++L+ATT+IEV
Sbjct: 452 ESQKMNYLSLKEGAPYWQKRF-EKVCVVSGKHK--DKEEIMETF-AKEGQILLATTLIEV 507

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GI +   S III   E  GLA LHQLRGRV R      C L  H   +    TRLS    
Sbjct: 508 GISLPKLSTIIIVGPERLGLATLHQLRGRVARLGGEGYCYLFTHQSNN----TRLSDFSQ 563

Query: 614 TEDGFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLL 656
           T DGF IA  DLK R  G++L G +QSG   F          L+
Sbjct: 564 TLDGFEIANLDLKYRHSGDLLHGKEQSGN-HFNFLDLSEDQHLI 606


>gi|313625455|gb|EFR95204.1| transcription-repair coupling factor [Listeria innocua FSL J1-023]
          Length = 899

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 106/338 (31%), Positives = 180/338 (53%), Gaps = 12/338 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T  Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSADDEMQREFEEAFPYQETDDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQHY
Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHY 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   I++GTH L    ++Y  L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDIVVGTHRLLSKDVEYQDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751 IVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +   N +  V E ++  L+   + Y++  ++E        S+ ++ + +      + 
Sbjct: 811 QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVE--------SITQKADEISAMVPDAR 861

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+
Sbjct: 862 VATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGV 899


>gi|313621017|gb|EFR92140.1| transcription-repair coupling factor [Listeria innocua FSL S4-378]
          Length = 899

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 105/338 (31%), Positives = 180/338 (53%), Gaps = 12/338 (3%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T  Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSADDEMQREFEEAFPYQETDDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQHY
Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHY 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   I++GTH L    ++Y  L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDIVVGTHRLLSKDVEYQDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           +VDE+ RFGV  + K+ Q  +   VL +TATPIPRTL ++ LG  D+S I   PA R P+
Sbjct: 751 VVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPV 810

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SS 517
           +T +   N +  V E ++  L+   + Y++  ++E        S+ ++ + +      + 
Sbjct: 811 QTYVAEQNNV-LVREAIERELARDGQVYYLYNRVE--------SITQKADEISAMVPDAR 861

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           +A  HG+M + + ESV+ SF  G   +L+ TT+IE G+
Sbjct: 862 VATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGV 899


>gi|290243095|ref|YP_003494765.1| helicase domain protein [Thioalkalivibrio sp. K90mix]
 gi|288945600|gb|ADC73298.1| helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 653

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 164/664 (24%), Positives = 284/664 (42%), Gaps = 57/664 (8%)

Query: 27  LSKIINCGNANETRFIDLLFYHPSSFIDRH----YRPKISEISEERIVTITGYISQHSSF 82
           L ++   G         LL   P ++ D      Y  ++S + +   V + G + Q  S 
Sbjct: 12  LGRLSTMGLKEWWHVSLLL---PEAWEDYRSTLRYAYELSALEDGSDVVVQGVVGQEPSV 68

Query: 83  QLQKRRP---YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
                RP    +I L+D T  I    F   T  + +    G  +   G++ ++  R+ + 
Sbjct: 69  SFSGGRPRTQVQIRLSDDT-PIAFSLFG-DTRGISDTIATGSTVLCRGRLARMDTRMFIN 126

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGL-SVDLFKKIIVEALSRLPVLPE---WIEKDLLQ 195
           +   +           I  VY  P G+      ++ + E +     +PE   W+ +++ +
Sbjct: 127 NAALVEPRW----AGKIRPVYPAPRGVMKASTVRERVSEVIEA--AIPEGAAWVTQEVQR 180

Query: 196 KKSFPSI---------AEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
                 I          E     H P   +D         R +        +A L     
Sbjct: 181 AAGSIGIEVKTSETDVREWLQKAHAPDTPEDG-------MRASRKLEELAALAALAKAYS 233

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            K+       ++ +  +    ++PF+ T+ QE+A++ I Q M+       +L GDVG+GK
Sbjct: 234 AKQCGSRAHALDLRGWRSRAGDVPFTMTEEQEAAVEAITQQMNTMEPQRHLLSGDVGTGK 293

Query: 307 TLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           T+V  +  AA  +AG  A +M P   LAQQ    +    +    I  +        H + 
Sbjct: 294 TVVFGLVAAATYDAGYSAAVMLPNEPLAQQVAREL---GEMWPDISFVTVAGDSVPHPQA 350

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQ--YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
            ++        I +GT AL     +    ++ LV+VDEQ ++ V QR +L Q     H+L
Sbjct: 351 GVDDPV-----IFVGTTALLSRINEDARPRIGLVVVDEQQKYSVAQREQLAQDGA--HLL 403

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             TAT IPRT+ L   G + +S++   P   K I T ++P      V  +++  L +G +
Sbjct: 404 EATATCIPRTMALIRYGAMQLSQLRT-PHTPKEITTQVVPGAESKRVFSQIQKTLEKGHQ 462

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              + P  +E   ++  ++        + +   +A I G M D +KE  +   ++G   +
Sbjct: 463 VLVVYPL-KEGDPNDRMALSNAIEFWKKRYGDRVAAISGSMEDTEKEQALARLRSGAADI 521

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LI TTV+EVG++      I+I +A  +GL QLHQLRGRV R      C L+      + +
Sbjct: 522 LIGTTVVEVGLNAPGLRHIVIADASRYGLMQLHQLRGRVARQGGKGLCSLIVPDNAKERT 581

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEI--LGIKQSGMPKFLIAQPELHDSLLEIARKD 662
             R  VL++T+DGF +AE D++ R  G++   G  Q G  +  +   ++    +E+A K 
Sbjct: 582 LERFRVLESTQDGFEVAEHDMRLRGFGDLGADGGTQHGGDETFLFGKKID---VEVADKV 638

Query: 663 AKHI 666
           A  I
Sbjct: 639 AGAI 642


>gi|330897623|gb|EGH29042.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 485

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 126/358 (35%), Positives = 188/358 (52%), Gaps = 17/358 (4%)

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           QQHY   +    +  + VE+++          A+  +A G+  I+IGTH L QD ++   
Sbjct: 1   QQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDDVKIKN 60

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L LVI+DE+HRFGV+Q+ +L    +   +L +TATPIPRTL +   G  D+S I   PA 
Sbjct: 61  LGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPAR 120

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           R  ++T ++  N+   + E L   L  G + Y++   ++  ++            L    
Sbjct: 121 RLSVRTFVMEQNK-PTIKEALLRELLRGGQVYYLHNDVKTIEK-----CAADLAELVPE- 173

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
            + I I HG+M + + E VM  F +    +LIA+T+IE GIDV  A+ IIIE A+ FGLA
Sbjct: 174 -ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLA 232

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRK 629
           QLHQLRGRVGR    +   LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R 
Sbjct: 233 QLHQLRGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVLATNDLEIRG 292

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            GE+LG  QSG          L+  +LE A K  +    + P+L    G    I L +
Sbjct: 293 AGELLGDGQSGQI--QAVGFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 346


>gi|242066222|ref|XP_002454400.1| hypothetical protein SORBIDRAFT_04g030170 [Sorghum bicolor]
 gi|241934231|gb|EES07376.1| hypothetical protein SORBIDRAFT_04g030170 [Sorghum bicolor]
          Length = 409

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 146/407 (35%), Positives = 225/407 (55%), Gaps = 37/407 (9%)

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT----QIIVEIITGNMPQAHRRKALER 370
              V +G QA  M P  +LA QHYE +    +      +  + ++TG+      R     
Sbjct: 1   MEVVNSGFQAAFMVPTEVLAVQHYEHLTSLLEKFDGDEKPNIALLTGSTSTRESRIIRNG 60

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL---------------- 414
           +  G+  ++IGTH+L  D   +  L + ++DEQ RFGV QR +                 
Sbjct: 61  LKTGEIAMVIGTHSLIADKTDFSSLRISVIDEQQRFGVVQRGRFNSKLYTSSSKLSDENT 120

Query: 415 -------TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
                  ++   APHVL M+ATPIPRTL L   GD+ +++IT+ P GR+PI+T+ +  N 
Sbjct: 121 SSDETSDSETFMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRQPIETLALEGND 180

Query: 468 I--DEVIERLKVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFT-SSIAIIHG 523
           +  + V + ++  L +G K Y + P I+E ++    R+    F+S+ + F      ++HG
Sbjct: 181 VGFETVFQMMRDELLDGGKVYLVYPIIDESEQLPQLRAATAEFDSIKKKFEGYPCGLLHG 240

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
           RM   +KE  + SF++G  ++L++T VIE+G+DV DAS++I+ NAE FG+AQLHQLRGRV
Sbjct: 241 RMRSNEKEEALSSFRSGETRILLSTQVIEIGVDVPDASMMIVMNAERFGIAQLHQLRGRV 300

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MP 642
           GRGE  S CI L     + ++  RL VL+ + DGF +A  DL  R  G +LG KQSG +P
Sbjct: 301 GRGERKSRCIFLAS---TLSTLPRLKVLEKSSDGFYLANADLLLRGPGNLLGKKQSGHLP 357

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           +F IA+ E+  S+L+ A   A  +L    DL       +++ L + Q
Sbjct: 358 EFPIARLEIDGSILQEAHLAALKVLVASNDLALYP--RLKVELSMRQ 402


>gi|222823694|ref|YP_002575268.1| ATP-dependent DNA helicase [Campylobacter lari RM2100]
 gi|222538916|gb|ACM64017.1| ATP-dependent DNA helicase [Campylobacter lari RM2100]
          Length = 607

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 171/647 (26%), Positives = 287/647 (44%), Gaps = 54/647 (8%)

Query: 30  IINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRP 89
           +           IDL    P  F D      IS+  ++   T    I    +   Q    
Sbjct: 8   LKLLHTLGVKNCIDLALILPKKFDDFR----ISKFPKDTFCTQNVKIISTQNHHSQLFML 63

Query: 90  YKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS 148
            + L     G +  ++ F+      K +F     + +  K+         ++P  +    
Sbjct: 64  CECL---EWGIKANIVIFHPNKWHFK-IFKHNALVCIHAKMNFFNGIWQFINPKIV---- 115

Query: 149 QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
              N   I   Y + + +  +  KK+I++ ++   +      K L  ++ + ++    + 
Sbjct: 116 --KNIGQIVPKYQISS-IKDESIKKLILKYVNEANL------KALNLEQKYINLLLNLHN 166

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN 268
                    +E  +   + L Y E+        L R + KK       ++       L+ 
Sbjct: 167 Y---DDLTLYENFNAIVKDLKYIEIFNH-----LRRLKGKKISQNAYKIDLFDISSWLKG 218

Query: 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
           + F+PT  Q  AI+DI +D+  K    R++ GDVG GKTL+ L A         +A++MA
Sbjct: 219 LEFNPTNDQLLAIEDIKKDLQSKVAKRRVVMGDVGCGKTLIILAASLLVYP--KKAILMA 276

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P  ILA+Q Y   K+   +  + V ++ G        K  E     QAH IIGTHAL   
Sbjct: 277 PTSILAEQIYHEAKRLLPDF-VNVLLLKGGKKDKDLAKLKE-----QAHFIIGTHALI-- 328

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKL----TQKATAPHVLLMTATPIPRTLVLTSLGDID 444
             + ++ +LV++DEQHRFG  QR K+         APH++  +ATPIPRTL +     ++
Sbjct: 329 HQEEFEAVLVMIDEQHRFGSNQRQKISELSKNSQYAPHIVQFSATPIPRTLSMIQSELVN 388

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
            S I + P  +K IKT  I       +++++   L++  +   I P + E +  ++ S +
Sbjct: 389 FSFIKQMPF-KKDIKTFCIQDKDFKYLLKKIDDELAKNHQVIIIYPLVNESENIDYLS-L 446

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           E+      +   ++ + HG+  +  K+ ++  F+     +L++TTV+EVGI +   S+I+
Sbjct: 447 EQAQGYWINKYKNVYVTHGKDKN--KDQILQEFRE-KGTILLSTTVVEVGISLPRLSVIV 503

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           +  AE  GLA LHQLRGRVGR    S C L           +RL     T DGF IAE D
Sbjct: 504 VVGAERLGLATLHQLRGRVGRVGLESFCYLYTKQK---EIPSRLLEFAKTLDGFKIAELD 560

Query: 625 LKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           LK R  G++L G  Q G   F        + L+  A++  K++  ++
Sbjct: 561 LKNRLSGDLLDGRVQHGN-HFKFFDFADDEELVLKAKESIKNMEKEN 606


>gi|134288262|ref|YP_001110425.1| helicase domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134132912|gb|ABO59622.1| helicase domain protein [Burkholderia vietnamiensis G4]
          Length = 636

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 148/653 (22%), Positives = 274/653 (41%), Gaps = 55/653 (8%)

Query: 29  KIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISE-ERIVTITGYISQHSSFQLQKR 87
           KI            + L   P  + D      I  I +      +   +++ + +  Q+ 
Sbjct: 4   KIGRLSRLGFRSLAECLLSAPKEYRDYLEPLHILPIPDTGIKHYLVLTLTEKTLYDKQRN 63

Query: 88  --------RPYKILLNDGTGE-ITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIM 138
                       +   DG G+ I++  F          F  G ++ + G++   + R  +
Sbjct: 64  VTSLWKNASRLVMRGVDGRGDGISITVFGSVWPW--KEFKLGDELHLYGEVTTWEGRRQL 121

Query: 139 VHPHYIFHNSQDVNFPLIEAVYSLPTG-LSVDLFKKIIVEALSRL-PVLPEWIEK----- 191
            +P  +  + +      +  +Y    G +  +L  + + +AL  +       +E+     
Sbjct: 122 NNPDLVLASDR----GRVVPLYQGKPGQVKGELLSQAVAQALPMVNDASCMLLEQAGMRE 177

Query: 192 -DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
            D      F   A+   ++H P   ++          L+   +    +   +  +  +  
Sbjct: 178 SDFRNATGFNDPADLIRMLHLPPSVREGAAAIDTARSLSLKAI----LNRAIRNQSHQPV 233

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
            G  I V+     +++  +P+  T  Q  AI +I+ D+     M R+L GDVG+GK++  
Sbjct: 234 AGSSIAVDRDKVGRLVAALPYPLTSDQAKAIDEIVADLRSPFPMRRLLSGDVGTGKSVTF 293

Query: 311 LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           ++   AA   G +  I+AP  +L +Q    I++    T +   +    + +         
Sbjct: 294 MVPAVAAHLEGARIAIIAPSQLLVEQLAGEIRQLFPGTPVCEVVSGSKIGEG-------- 345

Query: 371 IAHGQAHIIIGTHALFQ----DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
                  I++GT A+       +IQ+    LV+ DEQHRF V Q+  L    T  + L  
Sbjct: 346 -------IVVGTTAVISAAKKSAIQF---DLVVADEQHRFSVDQKASLLALHT--NFLEA 393

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TAT IPRTL L   G + +S + E P  +K ++T I+       + + +   + EG +  
Sbjct: 394 TATAIPRTLALVQFGGVAVSVLRECPV-KKRVRTRIVNRKDGGRLFDFVYQQIQEGGQVA 452

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            I P  E+K + +  SV   +   H  +   + ++HG++SD +K +V+   K G   +L+
Sbjct: 453 VIYPLAEDKGDGDRSSVEAAYARFHAKWGDRVGMLHGKLSDDEKNTVIAKMKAGGIDILV 512

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           ++TVIEVGI +     +++ NA+ FG++QLHQLRGRV R        L        ++  
Sbjct: 513 SSTVIEVGITLPSLRAVVVVNADRFGVSQLHQLRGRVARKGGDGFFFLYLPEDAEDDAMA 572

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEIL--GIKQSGMPKFLIAQPELHDSLLE 657
           RL ++    DGF +AE D   R  G++      Q+G  + L     +    +E
Sbjct: 573 RLRLVTECNDGFTLAERDADLRGFGDVESSSDAQTGNSRLLFWGITIERKEIE 625


>gi|270284301|ref|ZP_05965889.2| ATP-dependent DNA helicase [Bifidobacterium gallicum DSM 20093]
 gi|270277510|gb|EFA23364.1| ATP-dependent DNA helicase [Bifidobacterium gallicum DSM 20093]
          Length = 852

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 145/408 (35%), Positives = 209/408 (51%), Gaps = 31/408 (7%)

Query: 317 AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           A + G +     P    +    + I       Q+ V ++TG M  A RR+ L   A G+ 
Sbjct: 443 AADGGSEGAREEPATAKSVSRKQQINMNLGTPQVPVYLLTGGMKLAERRRVLAAAAGGEP 502

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTL 435
            I+I THA F  + Q   L L +VDEQHRFGV+QR  L  K    PH+L+MTATPIPRT 
Sbjct: 503 CIVIATHAAFSKTFQAPNLALAVVDEQHRFGVEQRETLRAKGERDPHLLVMTATPIPRTA 562

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQI 492
            +T  GD+DIS++TE P GRKPI+T I+      R+  +   ++  +  G++AY ICP+I
Sbjct: 563 AMTWFGDLDISELTELPGGRKPIRTFIVQEADATRMGSMFALIRQRIDAGERAYVICPRI 622

Query: 493 EEKKESNFR-------------------------SVVERFNSLHEHFTSSIAIIHGRMSD 527
           +  +E   +                          +  R   L +    + A + GR  D
Sbjct: 623 DADEEQPDQGEGDGPQLFDDGEESTPKPPLHSVEEMFTRLQHLPQFAGVAFARLTGRDDD 682

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             K +VM  F +G   +L+ATTV+EVG+DV  AS I+I +A+ +GL+QLHQLRGRVGRG 
Sbjct: 683 ATKNAVMADFSSGRTPVLVATTVVEVGVDVPQASCIVIFDADRYGLSQLHQLRGRVGRGG 742

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLI 646
             S   L+        +  RL  ++ T DG  IA++DL+ R  G++LG  QSG      +
Sbjct: 743 TNSWAFLISRAEDGTVAQERLMAIEGTLDGAQIAQKDLELRGAGDVLGDAQSGGKSSLKL 802

Query: 647 AQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
            +      L+  AR ++  +L  D DL     Q    +L   + NEAF
Sbjct: 803 LRVVKDAGLIAQARDESAELLEADHDLHQWP-QLAGAVLDFTRGNEAF 849



 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 149/412 (36%), Gaps = 78/412 (18%)

Query: 23  YSLFL---SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQH 79
            +  L    ++    +   T   D L Y+P    D      + E      +     +   
Sbjct: 13  LASLLTNKRRVSALKSLGLTTVSDALTYYPFRVTDPVPVRALKEARFGEKMACVAQVRYC 72

Query: 80  SSFQLQKRR--PYKILLNDGTG---------EITLLFFYRKT---EMLKNVFFEGRKITV 125
            +  +  RR    +++++D            + +L+FF  +    + + +    G+ I +
Sbjct: 73  RTVPMAARRGSRLEVIVDDSPSAASRQMPPSQCSLVFFSHRPSYVDWMASRLQPGQLIVL 132

Query: 126 TGKIKKLKNRIIMVHPHYIF------------------HNSQDVNFPLIEAVYSLPTGLS 167
            G      +R+   HP  +                                VY   + +S
Sbjct: 133 AGDPSSFNDRLQFTHPEILTISPPATLASSALTYDCDSVPEALARVCRPRPVYHASSRIS 192

Query: 168 VDLFKKIIVEAL-------------------------------------SRLPVLPEWIE 190
            +   + I+  L                                     + L  +P+ + 
Sbjct: 193 TEHIHETILGLLRLLAGLDMTVPDPQQGPSNDVSVAATTLFDASEHTRTALLQAIPDVLP 252

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDF-EWTSPARERLAYDELLAGQIALLLMRKQFKK 249
           + +         A+AF+ IH+P+    F +     R    ++E    Q ALL+ R   K+
Sbjct: 253 EPVRVHNHLMHRAQAFSQIHDPQTVHAFKDAIGTMR----FEEAFICQTALLMSRAAAKQ 308

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   +  + ++ +  +PFS T  Q+  I  I  DM Q + M R+LQG+VGSGKT+V
Sbjct: 309 GNAWSC-TDQVLREQFIEQLPFSLTAGQQLVIDAIAHDMEQDHPMQRLLQGEVGSGKTVV 367

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           A+ AM  AV +G QAV++AP  +LA+QH   I K  ++           + +
Sbjct: 368 AVAAMLQAVGSGHQAVLVAPTQVLAEQHAASIAKMVKDLDSQDFCSQSGLKK 419


>gi|309805527|ref|ZP_07699572.1| ATP-dependent DNA helicase RecG family protein [Lactobacillus iners
           LactinV 09V1-c]
 gi|308165178|gb|EFO67416.1| ATP-dependent DNA helicase RecG family protein [Lactobacillus iners
           LactinV 09V1-c]
          Length = 353

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/369 (26%), Positives = 154/369 (41%), Gaps = 28/369 (7%)

Query: 6   LNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEIS 65
           L  L  P+S   GVG K +  LS++            DLLFY P  + D      ++E+ 
Sbjct: 6   LKVLLNPVSDLDGVGVKTAEALSQLK------IKTIYDLLFYFPRRY-DSLETFPLNELK 58

Query: 66  EERIVTITGYISQHSSFQLQK----RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR 121
           + + V + G I              R  +K+ ++     I + FF +    LK    +G 
Sbjct: 59  DGQKVLLKGKIVTDVVVSRYGYHNTRLNFKMQIDHD--IIMVNFFNQ--PWLKKQLQKGN 114

Query: 122 KITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS- 180
            I + GK       +       I    +       E VYSL + +        I +A+  
Sbjct: 115 DIAIYGKYVLASQTLSAYK---IVLKEE-----GFEPVYSLNSHIKQKKLVSFINQAIEK 166

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQI-A 239
            LP LPE I + L  K     +      +H P   KD +    A+    + E    Q+  
Sbjct: 167 YLPQLPEVIPQYLRDKYKLLDVQSMIIQMHQP---KDLQQVKVAQRTAIFLEFFVFQLQL 223

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
             L+    +K  GI    +     ++  +I F  +  Q  AI +IL D++   RM R+LQ
Sbjct: 224 SQLLYANDQKNNGIAKKYDSSAINELKESINFQLSDDQIQAICEILADLASAKRMNRLLQ 283

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I    +   +   ++T + 
Sbjct: 284 GDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSST 343

Query: 360 PQAHRRKAL 368
               +++ L
Sbjct: 344 KLNEKKEDL 352


>gi|330861382|emb|CBX71615.1| transcription-repair-coupling factor [Yersinia enterocolitica
           W22703]
          Length = 740

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 103/350 (29%), Positives = 172/350 (49%), Gaps = 11/350 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   ++       +A ++  +  ++  K   G     + +  Q   ++ PF  T  QE 
Sbjct: 369 WSRARQKAAEKVRDVAAELLDIYAQRAAK--SGFKFKFDREQYQLFCQSFPFETTPDQEQ 426

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM +   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +LAQQH++
Sbjct: 427 AINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTLLAQQHFD 486

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +       + +E+++       ++  LE+ A G+  IIIGTH L Q  +++  L L+I
Sbjct: 487 NFRDRFATWPVRIEMMSRFRSAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRWQDLGLLI 546

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 547 VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 606

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   + +  V E +   +  G + Y++   +E     N     ++   L     + IA
Sbjct: 607 TFVREYDSL-VVREAILREILRGGQVYYLYNDVE-----NIEKATQKLAELVPE--ARIA 658

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
           I HG+M + D E VM+ F +    +  A  + + G+ +  A I +  NA 
Sbjct: 659 IGHGQMRERDLERVMNDFHHQRFNVWSAPPLSKRGL-IFRAPIPLSSNAP 707


>gi|171911105|ref|ZP_02926575.1| ATP-dependent DNA helicase RecG [Verrucomicrobium spinosum DSM
           4136]
          Length = 903

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 128/313 (40%), Positives = 186/313 (59%), Gaps = 4/313 (1%)

Query: 375 QAHIIIGTHALFQD--SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
              I+IGTHAL  +  +    +L LV++DEQH+FGV QR +L  +  AP VL+MTATPIP
Sbjct: 580 GPDIVIGTHALLYERSAGNLPRLGLVVIDEQHKFGVAQRARLIAQGEAPDVLVMTATPIP 639

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL LT  GD+D+S I ++P  R  I T +  + +++EV + +   L EG++ Y + P I
Sbjct: 640 RTLTLTLYGDLDVSTIDQRPKERGKIITAVREVTKVEEVTKFVLTRLEEGRQCYIVYPLI 699

Query: 493 EEKKESNFRSVVERFNSLHEHF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           EE ++ +  +         +     +  ++HGRM    KE+VM  F+ G+ K+L++TTVI
Sbjct: 700 EESEKLDAGAATTGLEEWTKRLAPHATGLLHGRMDTEAKEAVMRQFREGSVKVLVSTTVI 759

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           EVG+DV +A+++II ++  FGLAQLHQLRGR+GRG   S  IL   P   K +  RL +L
Sbjct: 760 EVGVDVPNATVMIIHDSGRFGLAQLHQLRGRIGRGAHTSYAILFV-PKGDKEAMARLKLL 818

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           + T DGF IAEEDL +R  G++LG  QSG              L+  AR+ A+  L  DP
Sbjct: 819 EETTDGFKIAEEDLARRGPGDVLGSAQSGQSPLRFGSLLADTRLVTTARRLAERTLKGDP 878

Query: 672 DLTSVRGQSIRIL 684
           +L       +R +
Sbjct: 879 ELLHPEHAHLRAM 891



 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 109/442 (24%), Positives = 180/442 (40%), Gaps = 35/442 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           +  PL    G+       L+K         T    L+ + P+   DR           E 
Sbjct: 10  IETPLDQVEGLRPAAVRMLAKE------GLTTVGSLVLHFPARHEDRRRMDFKGFGPSET 63

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDG------TGEITLLFFYRKTEMLKNVFFEGRK 122
            V     + +    +  +R      + +         ++TL +F      L+ V     +
Sbjct: 64  PVCHHVRVLKTRVLRFGQRGGVFETVVEAAESNPLHQQLTLRWF--GMVYLQKVLAVDME 121

Query: 123 ITVTGKIKKLKNRIIMVHPHYIFHNSQD------VNFPLIEAVYSLPTGLSVDLFKKIIV 176
           + V GKIK++K+R++M HP Y      D      ++   I  VY L  GL     ++   
Sbjct: 122 LMVYGKIKEIKDRLLMDHPEYEILRGDDDDDEAGIHASRIVPVYRLRGGLKQKPLRRTTW 181

Query: 177 EALSRLPV--LPEWIE-KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDEL 233
           + +  LP   LP+ +         +  + A A   +H+P     F+  + ++  LA +E 
Sbjct: 182 QVMEHLPAVALPDILPRPKAGGDFAGMTRATALRTLHHPEG---FDELTKSQRYLALEEF 238

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
              Q+  +  + QFK   G     EG++    L  +PF  T +Q  ++++IL DM+    
Sbjct: 239 YLMQLRAVRRKLQFKHHGGTAQRAEGRLLTAFLETLPFQMTGAQSRSLEEILADMALPQP 298

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           M R+L GDVGSGKT+VAL AM  AVEAG Q  +MAP  ILA+QHYE  +++ +   I V 
Sbjct: 299 MNRLLHGDVGSGKTVVALAAMLMAVEAGRQGALMAPTQILAEQHYENARRWLEPLGIRVA 358

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           + T +     + +  +    G         A FQ ++    L              +R  
Sbjct: 359 LRTADKVLDSQPETSKADVLG--------SARFQRAVV-GILPTTHASGTSEPIYHKRRM 409

Query: 414 LTQKATAPHVLLMTATPIPRTL 435
              +      +L  +T   R L
Sbjct: 410 PHIERPWGKYMLTWSTRDHRQL 431


>gi|315453841|ref|YP_004074111.1| ATP-dependent DNA helicase [Helicobacter felis ATCC 49179]
 gi|315132893|emb|CBY83521.1| ATP-dependent DNA helicase [Helicobacter felis ATCC 49179]
          Length = 624

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 173/657 (26%), Positives = 268/657 (40%), Gaps = 57/657 (8%)

Query: 23  YSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSF 82
            +  + ++        + F+ LL Y P  +        + ++   +   +        + 
Sbjct: 1   MAKIIEEMDLNLGLPLSDFLQLLLYPPKDY---TAYTLLEKLENGQEGCLEVRKLSAHAG 57

Query: 83  QLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKI--KKLKNRIIMVH 140
           ++ K R   +  N     I L+ F   T      F +     + GKI      N   MV+
Sbjct: 58  KILKIRVLALAFNQE---IDLVCFN-YTPYHTKSFSQ-SCYFIYGKISINPYSNNFQMVN 112

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP-EWIEKDLLQKKSF 199
           P  I                S    + +   +KI    +  L V+  E + K  L +   
Sbjct: 113 PTRIDRPQSIALHFK-----SNTRQIPIFKNQKIKDYQVFCLSVIHAENLIK--LTQIGI 165

Query: 200 PS-IAEAFNIIHNPRKAKDFEWTSPAR-------ERLAYDELLAGQIALLLMRKQFKKEI 251
            S I EA   I  P      E     +       + L Y E         L  K+++   
Sbjct: 166 SSKIIEALERIFYPTLEF-VERFKAHKGFFGIYLQALKYIEAFVY--MRALSAKKWEFPS 222

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               +   +  Q  L+N+PF+ T  Q+ AI  I  DM  +    R++ GDVG GKT+V L
Sbjct: 223 KFARHANLENLQIFLKNLPFTLTSDQQRAITSIQADMQGQVAAKRLIMGDVGCGKTMVIL 282

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            ++  A+    ++++MAP  +LA+Q Y+   K+     I V ++ G   +  + +     
Sbjct: 283 ASV--ALTFPHKSLLMAPTSVLAKQLYQEALKFL-PPHIKVSLLLGGTSKKIKEEVNHST 339

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA--------PHV 423
                  IIGT  L   S+   ++ LVI DEQHRFG +QR  L   A          PH 
Sbjct: 340 F------IIGTTTLLYASLDTKEVGLVISDEQHRFGSKQRHDLEIYARTEIGGVVCSPHY 393

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L  +ATPIPRTL +     I  + I +KP   K I+T +I       ++  ++  +   K
Sbjct: 394 LQFSATPIPRTLAMMEAKFIKTTLIKDKPYT-KDIETTLIDRTHFQALLHHIRHQIDSKK 452

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +   I P +EE    ++  + +  N    HF     +      D +KE +++ F      
Sbjct: 453 QVAIIYPLVEESVRQDYMPLRQAENYWKTHFE---GVYVTSGKDANKEEILEDF-AKEGH 508

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ATT+IEVGI +   S I++   E  GLA LHQLRGRV R      C L  H      
Sbjct: 509 ILLATTLIEVGISLPKLSTIVVVGPERLGLATLHQLRGRVARLGGKGYCFLFTH----YV 564

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIA 659
              RL     T DGF IA  DLK R  G++L G +QSG   F          ++  A
Sbjct: 565 HDVRLLAFSQTLDGFEIANLDLKHRNAGDLLQGTQQSG-AHFNYLDLATDQDVIAQA 620


>gi|157163925|ref|YP_001466408.1| res subunit family type III restriction enzyme [Campylobacter
           concisus 13826]
 gi|112801637|gb|EAT98981.1| ATP-dependent DNA helicase RecG [Campylobacter concisus 13826]
          Length = 606

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 172/621 (27%), Positives = 274/621 (44%), Gaps = 60/621 (9%)

Query: 49  PSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYR 108
           P  F D      I++   E  V I   I+  +S                   + ++ F  
Sbjct: 27  PKGFED----TTIAKSPREGQVCINVKITSLASRP--GMLTALAFCEQWQSSVKIVIFNA 80

Query: 109 KTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSV 168
           K       F  G+++ + G          +V+P       Q V     E        L  
Sbjct: 81  K-SWHYGAFKTGKEMAIYGLCSYAFGSWQIVNPKITTKIGQIVPKFKTE--------LKD 131

Query: 169 DLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIA----EAFNIIHNPRKAKDFEWTSPA 224
           +  KK+I++ L+   +L E + +   + K    +     ++  I++  +   D E     
Sbjct: 132 EELKKLILKYLNLQNLLAEGLNEK--EAKFLADLQRLDEQSVQILYRLKN--DGEGI--- 184

Query: 225 RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
            E L + E+    I  L  +K + K   I +          L  +PF+PT  Q +AI DI
Sbjct: 185 -EILKFVEIFNY-IKKLSAKKTYFKSPKIKLFDISSW----LNGLPFTPTNDQLNAINDI 238

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
             D+S      R++ GDVGSGKTLV L A  +       A++MAP  IL++Q Y   K+ 
Sbjct: 239 RDDLSAVQAKRRVIMGDVGSGKTLVILAAALSVYPQS--AILMAPTSILSEQIYNEAKRL 296

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
                + V ++     +               ++I+GTHAL    +    L++  VDEQH
Sbjct: 297 LPPF-VNVMLVRSGEKKIDFS---------GVNLIVGTHALLFHELPNSPLVM--VDEQH 344

Query: 405 RFGVQQRLKLTQKATAPH----VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           RFG  QR K+ + A++       +  +ATPIPRTL L     ++ S + + P  +K I +
Sbjct: 345 RFGSNQRKKIEELASSKDERANFVQFSATPIPRTLSLIQSEIVNFSFLKQMPF-KKNITS 403

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            I+  +    ++  +K  L+ G +   I P +E  + SN++S+ E      ++F  ++ +
Sbjct: 404 QILGASEFGFLLTHIKKQLAGGFQVAIIYPLVESSESSNYQSLSEAQGFWLKNF-KNVFV 462

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG+  D +KE ++  F+    ++L++TTV+EVGI +   + I+I  AE  GLA LHQLR
Sbjct: 463 THGK--DKEKEEILRRFRE-EGEILLSTTVVEVGISLPRLNTIVIVGAERLGLATLHQLR 519

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQS 639
           GRVGR      C L         +  RL     T DGF +AE DLK R+ G+IL G  Q 
Sbjct: 520 GRVGRNGGDGYCFLFTKLK---EAPARLKEFCATNDGFKVAELDLKNRQSGDILNGFFQH 576

Query: 640 GMPKFLIAQPELHDSLLEIAR 660
           G   F     E   +    AR
Sbjct: 577 G-ATFNFYDYEDDITQAAKAR 596


>gi|145641877|ref|ZP_01797452.1| ATP-dependent DNA helicase [Haemophilus influenzae R3021]
 gi|145273499|gb|EDK13370.1| ATP-dependent DNA helicase [Haemophilus influenzae 22.4-21]
          Length = 310

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/314 (28%), Positives = 152/314 (48%), Gaps = 20/314 (6%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLLF+ P  + DR     
Sbjct: 1   MSLELLDAV--PLTSLSGVGAAISNKLAKI------GIQNLQDLLFHLPIRYEDRTRITP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I+ +  E+  TI G I Q       +R    + L+DGT +I L FF     M +N F  G
Sbjct: 53  IANLRPEQYFTIEG-IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGM-RNSFQAG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
            ++   G++K+ ++   + HP Y  +  N+  V    +  +Y    GL  +  +K+  +A
Sbjct: 111 VRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTPIYPTTEGLKQNSLRKLTDQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDE 232
           L+ L    + E +  +    +   S+ EA  ++H P      E       PA+ RL ++E
Sbjct: 171 LALLDKVQIAEILPNEFNPHQ--YSLKEALRLLHRPPPDISLEMLEQGKHPAQLRLIFEE 228

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           LLA  +A+  +R   ++   +P++ +  +  + L  +PF PT +Q+  + DI QD+ +  
Sbjct: 229 LLAHNLAMQKVRLGTQQFSALPLHYQTDLKLRFLATLPFQPTNAQKRVVSDIEQDLIKDY 288

Query: 293 RMLRILQGDVGSGK 306
            M+R++QGDVGSGK
Sbjct: 289 PMMRLVQGDVGSGK 302


>gi|218462028|ref|ZP_03502119.1| ATP-dependent DNA helicase protein [Rhizobium etli Kim 5]
          Length = 225

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 91/224 (40%), Positives = 128/224 (57%), Gaps = 1/224 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K++      + R IDLLF+ P S IDR  +P 
Sbjct: 1   MRPAILDPLFSPISGLPGVGPKIAELLVKLLGRETPEDCRVIDLLFHAPFSLIDRRNQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 61  IALSPQGAIVTITARVDRHQVPPRGKTNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPV 120

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GK+     R  MVHP YI    +  N PL+E +Y L  GLS    +KII  AL
Sbjct: 121 DAEVTVSGKVDWFNGRASMVHPDYIVRAEEAENLPLVEPIYPLTAGLSPKTLRKIIDAAL 180

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSP 223
            R P LPEWI   L QK+  PSI ++F+++H PR   D +  +P
Sbjct: 181 PRFPELPEWINSALAQKQGLPSIRDSFHMLHEPRDPADIDPQAP 224


>gi|224418611|ref|ZP_03656617.1| ATP-dependent DNA helicase RecG [Helicobacter canadensis MIT
           98-5491]
 gi|253826841|ref|ZP_04869726.1| ATP-dependent DNA recombinase RecG [Helicobacter canadensis MIT
           98-5491]
 gi|313142138|ref|ZP_07804331.1| ATP-dependent DNA helicase [Helicobacter canadensis MIT 98-5491]
 gi|253510247|gb|EES88906.1| ATP-dependent DNA recombinase RecG [Helicobacter canadensis MIT
           98-5491]
 gi|313131169|gb|EFR48786.1| ATP-dependent DNA helicase [Helicobacter canadensis MIT 98-5491]
          Length = 613

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 170/634 (26%), Positives = 282/634 (44%), Gaps = 71/634 (11%)

Query: 54  DRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEML 113
           D        ++       +   + ++SSF+  +   Y  LL+    EI L+ F  KT   
Sbjct: 30  DYSNTILSPKLIANAQAVLEVEVLRYSSFKNARVLCYAPLLD---KEIELMIFNAKT-YH 85

Query: 114 KNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK 173
           K++F  G ++ V+GK++   + I ++ P  +           I   +             
Sbjct: 86  KSIFRVGERLIVSGKVQIQGSFISVIQPKVL------KQTGKILPNFHAKG--------- 130

Query: 174 IIVEALSRLPVLPEW---IEKDLLQKK--SFPSIAEAFNIIHNPRKAKDFEWTSPAR--- 225
                 +R+ +L E+   ++ DLL +   + P       ++      + F   S  R   
Sbjct: 131 ------ARVLLLQEFVGSLDLDLLSQVYPNIPLEILEALLLIFQPNLEFFVEYSKNRGFF 184

Query: 226 ----ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
               E L + E+   +    L  K+ +      +  + +  Q    ++PF  TK QE AI
Sbjct: 185 GKNLEALKFVEI--YEYMRQLQTKKVEFPSICALRGDFRQWQ---DSLPFKLTKGQEKAI 239

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341
            +I   ++ +    R++ GDVG GKT+V   ++  A     ++V+M P  ILA+Q Y   
Sbjct: 240 LEIASSLNSQKSARRVIVGDVGCGKTMVIFASVLIAYP--KRSVLMVPTSILAKQIYNES 297

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD 401
           +KY     + V + T    +    ++           +IGTHAL    IQ     LV++D
Sbjct: 298 QKYLPK-NLKVALWTQGAKKGDLEQS---------DFVIGTHALLYQKIQ--NFALVMID 345

Query: 402 EQHRFGVQQRLKLTQKAT----APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           EQHRFG  QR  L +        PH+L  +ATPIPRTL +     +D S I + P  +K 
Sbjct: 346 EQHRFGTAQRNTLERMFEKNQKRPHILQFSATPIPRTLAMIESEFLDFSFILDLPF-KKD 404

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           I + +I      E+I  ++  +S   +   I P +EE K  ++ S+ E       HF+  
Sbjct: 405 ITSRVIAKADFKELIAHIQREISLQHQVLIIYPLVEESKAMDYVSLKEGEEFWRRHFS-- 462

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
             +      D  KE V++ F++    +L+ATTV+EVGI +   S I+I  AE  GLA LH
Sbjct: 463 -GVYVTHGKDKLKEEVLEEFRD-KGNILLATTVVEVGISLPKLSTIVIVGAERLGLATLH 520

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GI 636
           QLRGRV R      C L  +   +     RL      + GF +A+ DL+ R  G++L G 
Sbjct: 521 QLRGRVSRNGLKGYCFLYSNQANN----ERLKRFCQIQSGFEVAQMDLEYRNSGDLLSGE 576

Query: 637 KQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           +QSG  +F        + ++E+A+   K +  ++
Sbjct: 577 QQSG-KQFEWINLGSDEKVIELAKVALKKMNQEN 609


>gi|213622278|ref|ZP_03375061.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 281

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 123/280 (43%), Positives = 177/280 (63%), Gaps = 4/280 (1%)

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           Q+   PH L+MTATPIPRTL +T+  D+D S I E P GR P+ TV IP  R  E+I+R+
Sbjct: 4   QQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRV 63

Query: 476 KVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESV 533
           +   + EG++AYW+C  IEE      ++    +  L       +I ++HGRM   +K++V
Sbjct: 64  RNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAV 123

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +FK G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+
Sbjct: 124 MQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 183

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      
Sbjct: 184 LLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQ 243

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           +++   ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 244 AMIPEVQRIARHIHERYP--QQAQALIERWMPETERYSNA 281


>gi|212716752|ref|ZP_03324880.1| hypothetical protein BIFCAT_01689 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660456|gb|EEB21031.1| hypothetical protein BIFCAT_01689 [Bifidobacterium catenulatum DSM
           16992]
          Length = 912

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 142/376 (37%), Positives = 203/376 (53%), Gaps = 48/376 (12%)

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           ++ +I V ++TG M  A RR+ L   A G   I++ THA F  S Q   L L ++DEQHR
Sbjct: 513 KDGEIPVFLLTGGMRLAERRRILAAAASGMPCIVVATHAAFSKSFQAPNLTLAVIDEQHR 572

Query: 406 FGVQQRLKL-TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           FGV+QR  L ++ ATAPH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T ++P
Sbjct: 573 FGVEQRESLNSKGATAPHLLVMTATPIPRTAAMTWFGDLDISALTELPGGRKPIRTFVVP 632

Query: 465 INR---IDEVIERLKVVLSEGKKAYWICPQIEEKKE------------------------ 497
            +    + E+   ++  +  G+ AY +CP+I++  E                        
Sbjct: 633 ESNASLMSEMFALIRKRIDAGELAYVVCPRIDDDSENADDVLAESATSNSKTTGSPIPAF 692

Query: 498 -------------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
                               +   +VER  SL +      A + GR  D  K  VM  F+
Sbjct: 693 DEAYDLGEDDEQRAQRPPLHSVAEIVERLQSLPQFKGIRFATLTGRDDDTTKSQVMADFE 752

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+ATTVIEVG+DV  AS I+I +A+ +GL+QLHQLRGRVGRG   S   L+   
Sbjct: 753 AGITPILVATTVIEVGVDVAKASCIVIFDADRYGLSQLHQLRGRVGRGGTDSGAFLISRA 812

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLE 657
           P   ++  RL V++ T DG  IA+ DL+ R  G++LG  QSG      + +      ++E
Sbjct: 813 PADSDAARRLDVIQGTLDGAEIAQADLEFRGAGDVLGDAQSGGKTGLKLLRVVKDVKIIE 872

Query: 658 IARKDAKHILTQDPDL 673
            AR +A  ++  DPDL
Sbjct: 873 QARAEATQLVAADPDL 888



 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 93/422 (22%), Positives = 154/422 (36%), Gaps = 97/422 (22%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+S+             ++    +       D L Y+P    D      + E     
Sbjct: 5   LETPISSI-------ESNRRRVGALKSLGVVSVGDALTYYPFRVTDPVPAHALHEAKIGE 57

Query: 69  IVTITGYISQHSSFQLQKRR-PYKILLNDGT---------GEITLLFFYRKT---EMLKN 115
            +    ++ +   F + +R       + D              +L+FF  +    + ++ 
Sbjct: 58  KMAFAAHVLETRVFPMARRGFRLIATVTDDDFAARRNTPKSLASLVFFSYRKSYVDWVQR 117

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPL----- 155
               G  + V G+     NR+   HP  +  N                   N PL     
Sbjct: 118 KLHMGALLVVAGEPSVYDNRLQFTHPDLLTINPVQSQAESGEWNDGFGDPANPPLGNLKY 177

Query: 156 --------------IEAVYSLPTGLSVDLFKKIIVEALSRLP------------------ 183
                            VY   + +S +   + +++ +  L                   
Sbjct: 178 DAQTVDEALKRVCRPRPVYHANSRISSEHIHESVLKYMDALRGSEYLPSQTPNNSSDNIA 237

Query: 184 ---------------------VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222
                                 +P+ I +D  +K      AEAF  IH+P   K+F+   
Sbjct: 238 QEGEFDAPQVDREAQIKSLSVAIPDIIPEDFREKYGLMHRAEAFMAIHDPVDRKNFDNA- 296

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
              + L Y+E L  Q AL+  R   +K      +V  ++    + ++PF+ T  Q   I 
Sbjct: 297 --LQTLRYEEALICQTALVKTRDASRKNRATACSV-TRLKDDFIASLPFALTSGQRQVIA 353

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           DI  DM++   M R+LQG+VGSGKT+VA+ AM  AV +GGQAV++AP  +LA+QHY  I 
Sbjct: 354 DISADMTRDYPMQRLLQGEVGSGKTVVAVAAMMQAVGSGGQAVLVAPTQVLAEQHYASIS 413

Query: 343 KY 344
           K 
Sbjct: 414 KM 415


>gi|289679715|ref|ZP_06500605.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           syringae FF5]
          Length = 467

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 120/340 (35%), Positives = 179/340 (52%), Gaps = 17/340 (5%)

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
           E+++          A+  +A G+  I+IGTH L QD ++   L LVI+DE+HRFGV+Q+ 
Sbjct: 1   EVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVIIDEEHRFGVRQKE 60

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           +L    +   +L +TATPIPRTL +   G  D+S I   PA R  ++T ++  N+   + 
Sbjct: 61  QLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNK-PTIK 119

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           E L   L  G + Y++   ++  ++            L     + I I HG+M + + E 
Sbjct: 120 EALLRELLRGGQVYYLHNDVKTIEK-----CAADLAELVPE--ARIGIGHGQMRERELEQ 172

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM  F +    +LIA+T+IE GIDV  A+ IIIE A+  GLAQLHQLRGRVGR    +  
Sbjct: 173 VMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKVGLAQLHQLRGRVGRSHHQAYA 232

Query: 593 ILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
            LL  P   ++ ++  RL  + NT+D   GF++A  DL+ R  GE+LG  QSG       
Sbjct: 233 YLLTPPRKQITHDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQSGQI--QAV 290

Query: 648 QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
              L+  +LE A K  +    + P+L    G    I L +
Sbjct: 291 GFTLYMEMLERAVKSIRK--GEQPNLDQPLGGGPEINLRV 328


>gi|332865867|ref|ZP_08436651.1| putative transcription-repair coupling factor [Acinetobacter
           baumannii 6013113]
 gi|332735079|gb|EGJ66164.1| putative transcription-repair coupling factor [Acinetobacter
           baumannii 6013113]
          Length = 869

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 97/325 (29%), Positives = 164/325 (50%), Gaps = 10/325 (3%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   R+ L     +A ++  +  R+Q K   G    ++  +  +      +  T  Q +
Sbjct: 555 WSKAKRKALEQIHDVAAELLHIQARRQSK--PGFAFELDQSLYMQFASGFAYEETLDQAN 612

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI+  L DM Q   M R++ GDVG GKT VA+ A   AV+ G Q  ++ P  +LAQQHYE
Sbjct: 613 AIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYE 672

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             K    +  + +E+++         K +E +A+G+  I++GTH L Q+++Q+  L L++
Sbjct: 673 SFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMV 732

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 733 VDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVK 792

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           T +   +    + E +   L  G + Y++  ++E  +        E    L     + +A
Sbjct: 793 TFV-QEHTDASIKEAILRELLRGGQVYFLHNEVETIE-----RAAENIRVLVPE--ARVA 844

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKL 544
           + HG+M + + E VM  F +    +
Sbjct: 845 VAHGQMRERELEQVMQQFYHKEYNV 869


>gi|207744279|ref|YP_002260671.1| atp-dependent dna helicase (partial sequence) protein [Ralstonia
           solanacearum IPO1609]
 gi|206595684|emb|CAQ62611.1| putative atp-dependent dna helicase (partial sequence) protein
           [Ralstonia solanacearum IPO1609]
          Length = 399

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 95/359 (26%), Positives = 166/359 (46%), Gaps = 23/359 (6%)

Query: 26  FLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI----SEERIVTITGYISQHSS 81
            L+K+           +DL+ + P  + D      I+E     +      + G +++ + 
Sbjct: 47  KLAKL------GLRHDVDLVLHLPMRYEDETTLLTIAEAIARANTGWAAQVEGAVTR-NE 99

Query: 82  FQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHP 141
             L+ RR   + + D +GE+ L F       +K +  EG ++ V G+++       MVHP
Sbjct: 100 VALRPRRQLVVHIADDSGELVLRFLNFYGSQVKQM-AEGVRLRVRGEVRGGFFGAEMVHP 158

Query: 142 HYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQKK 197
                   +     +  VY    G++    +K I+ AL R P LPE +   L    L   
Sbjct: 159 TVRAVAPDEPLPDRLTPVYPSTAGVAQAYLRKAILNALGRTP-LPETLPDSLMRGPLAPL 217

Query: 198 SFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
              + AEA  ++H P    D     E T PA  R+ +DELLA Q++L   +   +     
Sbjct: 218 KLMAPAEAVRLLHQPTPDVDEHSLVERTHPAWLRIKFDELLAQQLSLKRAQAARRTRSAP 277

Query: 254 PINVEGKI--AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   G      + +  +PF  T +Q    ++I  D+++   M R+LQGDVGSGKT++A 
Sbjct: 278 VLRAGGAQGLLARFMAALPFKLTGAQGRVWEEIRADLARPYPMQRLLQGDVGSGKTVIAA 337

Query: 312 IAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           +A   A++AG QA +MAP  +LA+QHY  +  + +   + +  + G++ +  + +A  R
Sbjct: 338 LAACQAIDAGWQAALMAPTELLAEQHYRKLSAWLEPLGVDIVWLAGSLKRKQKDEAAAR 396


>gi|237753325|ref|ZP_04583805.1| ATP-dependent DNA helicase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375592|gb|EEO25683.1| ATP-dependent DNA helicase [Helicobacter winghamensis ATCC BAA-430]
          Length = 598

 Score =  249 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 167/580 (28%), Positives = 270/580 (46%), Gaps = 61/580 (10%)

Query: 100 EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFH-NSQDVNFPLIEA 158
           E+ L+ F+ K    K+ F    K+ V+GK++K      ++ P  +   NS  +NF  +  
Sbjct: 67  ELELIIFHAK-PYHKSQFKPASKLIVSGKVQKYGIAFSLIQPKVLKAVNSIVLNFGAV-- 123

Query: 159 VYSLPTGLSVDLFKKIIVE-ALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK--A 215
                 G      ++     AL  L      I   +L         E+   I++P     
Sbjct: 124 ------GGRERSLREFAESVALEPLREFYPNISPFIL---------ESLYKIYHPDFYFL 168

Query: 216 KDFEWTS----PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           KDF  +S       E + + E+   +   LL  K+   +    +N E    +  + ++PF
Sbjct: 169 KDFNASSGYFGQYLEAIKFMEI--YEYMRLLREKKLYFKALRQLNGE---IEHWINSLPF 223

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
             TK Q+ AIKDI   +  +    R++ GDVG GKT+V L ++  A  +  ++V+MAP  
Sbjct: 224 VLTKGQKEAIKDIQNSLKGEFAARRVIVGDVGCGKTMVILASVLIAYPS--KSVLMAPTS 281

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
           +LA+Q +   +K+   T + V ++T       R K            +IGTHAL    + 
Sbjct: 282 VLAKQLFNEAQKFLPKT-LKVGLLT------QRNKI----NVQDCDFLIGTHALLYQDLS 330

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAP----HVLLMTATPIPRTLVLTSLGDIDISK 447
              L++  +DEQHRFG  QR  L +         H+L  +ATPIPRT  + +   +D S 
Sbjct: 331 NRALVM--IDEQHRFGTAQRSALEKMFNTESQKAHILQFSATPIPRTQAMIASNFVDFSF 388

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507
           I + P  +K I T II       ++E ++  + +  +   + P +EE +  N+ ++ +  
Sbjct: 389 IKDIPF-KKDITTQIIHEEDFKGLLEHIQKEIQKENQIIIVYPFVEESQMLNYTALKDGE 447

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              + HF    A+      D  KESV++ F+     +L+ATTVIEVGI +   S I+I  
Sbjct: 448 EFWNRHFK---AVYSTHGKDKYKESVLEEFRE-KGSILLATTVIEVGISLPKLSTIVIVG 503

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           AE  GLA LHQLRGRV R      C L      +     RL     T++GF IA+ DL+ 
Sbjct: 504 AERLGLATLHQLRGRVSRNGLKGYCFLYTKQKTT----ERLEKFAKTQNGFEIAQLDLEY 559

Query: 628 RKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           R  G++L GI QSG  +F        + ++++A++    +
Sbjct: 560 RNSGDLLSGIHQSG-KQFNWIDLSEDEKIIKMAKEALLML 598


>gi|289643147|ref|ZP_06475276.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca
           glomerata]
 gi|289507039|gb|EFD28009.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca
           glomerata]
          Length = 829

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 123/355 (34%), Positives = 189/355 (53%), Gaps = 19/355 (5%)

Query: 154 PLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPR 213
             +  +Y     +      K +   L  L  L + +   +  +    S  EA+ ++H P 
Sbjct: 211 GGLLPIYPTAAKIPSWAIAKCVRIVLDLLTELDDPLPAAVRARYRLVSRLEAYRLVHQPS 270

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIA-QKILRNIPFS 272
              D       R RL +DE L  Q+AL   R   +K    P +            ++PF 
Sbjct: 271 SWADV---GRGRTRLKWDEALVLQVALAQRRHDVEKIAATPRHPRPDGLLAAFDASLPFP 327

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q +    I  ++++   M R+LQG+VGSGKT+VAL AM AAV+AGGQAV++AP   
Sbjct: 328 LTAGQRAVGDTIAAELARSFPMHRLLQGEVGSGKTVVALRAMLAAVDAGGQAVLLAPTET 387

Query: 333 LAQQHYEFIKKYTQNTQI-----------IVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           LA QH   ++                      ++TG++    RR+AL  +A G A +++G
Sbjct: 388 LAAQHLRSLRALLGPLGRAGELDAAAEATRAVLVTGSLGAKARREALTAVADGSAGLVVG 447

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA-TAPHVLLMTATPIPRTLVLTSL 440
           THAL ++S+ +  L LV+VDEQHRFGV+QR  L  ++   PH+L+MTATPIPRT+ +T  
Sbjct: 448 THALLEESVVFRDLALVVVDEQHRFGVEQRDALRSRSDRPPHLLVMTATPIPRTVAMTVF 507

Query: 441 GDIDISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWICPQI 492
           GD+++S +TE PAGR PI T ++P       + V  R++  ++ G++AY +CP+I
Sbjct: 508 GDLEVSTLTELPAGRSPISTFVVPATAPKWANRVWGRIRDEVAAGRQAYVVCPRI 562



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/185 (34%), Positives = 104/185 (56%), Gaps = 3/185 (1%)

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            +  +HGR+   +KE  M  F  G   +L+ATTVIEVG+DV +A+++++ +A+ FG++QL
Sbjct: 647 RVEALHGRLPPDEKEETMTRFAAGELDVLVATTVIEVGVDVPNATVMVVMDADRFGVSQL 706

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI 636
           HQLRGRVGRG     C+L         ++ RL+ +  T DG  +A  DL QR+EG++LG 
Sbjct: 707 HQLRGRVGRGSAPGWCLLYTDVEEGSPAWERLAAVAATSDGAELARLDLAQRREGDVLGA 766

Query: 637 KQS-GMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
            QS G     + +    + L+  AR +A  ++  DP L++    +  +   L +   A  
Sbjct: 767 AQSGGRRSLRLLELLRDEELIRCARGEASVLVDADPQLSAHPVLAAALAATLDETAAA-- 824

Query: 696 FIRAG 700
           ++  G
Sbjct: 825 YLEKG 829



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 9/137 (6%)

Query: 19  VGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQ 78
           VG + +  L+     G        DLL + P  + +R     + +++    VTI   ++ 
Sbjct: 12  VGARTATALA-----GALELETVGDLLAHLPRRYQERGELTDLGDLTVGEAVTIQARVTS 66

Query: 79  HSSFQLQKRR--PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRI 136
                L+ R      + ++DG   + L FF +           G      GK++    R 
Sbjct: 67  AKRRPLRGRGREMLIVTVSDGQHSLALTFFNQ--PWRSRDLRPGVTALFAGKVEVFNQRR 124

Query: 137 IMVHPHYIFHNSQDVNF 153
            M +P     +     F
Sbjct: 125 QMTNPEVQLLDDTIPGF 141


>gi|332185437|ref|ZP_08387185.1| carD-like/TRCF domain protein [Sphingomonas sp. S17]
 gi|332014415|gb|EGI56472.1| carD-like/TRCF domain protein [Sphingomonas sp. S17]
          Length = 1063

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 146/457 (31%), Positives = 218/457 (47%), Gaps = 17/457 (3%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFS 272
                +  S    R   D  +A     L    Q + +   P ++ E    ++     PFS
Sbjct: 480 TLDTLDGKSWQERRAGIDAAIAETARGLTELAQARGDRTAPVLDPEPAAYERFAAGFPFS 539

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q +AI+ +  D++    M R++ GDVG GKT VAL A A A  +G Q  I AP  +
Sbjct: 540 ETPDQRAAIEAVRSDLASGRPMDRLVIGDVGYGKTEVALRAAAIAALSGKQVAIAAPTTV 599

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LA+QH +   +   +T I V  ++     A  R+    +  G   I+IGT A+    + Y
Sbjct: 600 LARQHLDSFTQRFADTGIAVAGLSRLSTAAEARRVKAGLKDGSIQIVIGTGAVAGKGVAY 659

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             L LVIVDE+ RFG   + KL Q  +A HVL ++ATPIPRTL    +G   +S I   P
Sbjct: 660 ADLALVIVDEEQRFGAADKAKL-QALSAGHVLSLSATPIPRTLQAALVGLRQLSVIATPP 718

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A R+PI+T +      + +   L    S G +++ + P+I     ++   +  +   L  
Sbjct: 719 ARRQPIRTAVSAFA-PEMLRAALLRERSRGGQSFVVVPRI-----ADMAPLAAQLAELVP 772

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                +   HG+M   + +  M  F  G   +L+AT +IE G+DV  A+ + I +A+ FG
Sbjct: 773 ELE--LLQAHGKMPAAEIDEAMVRFGRGDGDVLLATNIIEAGLDVPRANTMAIVHADRFG 830

Query: 573 LAQLHQLRGRVGRGEEISSCILLYH-----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           LAQLHQLRGRVGRG      +L         P +      L        GF I+  DL  
Sbjct: 831 LAQLHQLRGRVGRGHRRGQVLLFTKGEDAIAPRTLKRLRTLEAFDRLGAGFAISGRDLDM 890

Query: 628 RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           R  G++LG  Q+G  + +    EL+  LLE A + A+
Sbjct: 891 RGAGDLLGQTQAGHMRLI--GVELYQQLLEGALRTAR 925


>gi|302841163|ref|XP_002952127.1| hypothetical protein VOLCADRAFT_92718 [Volvox carteri f.
           nagariensis]
 gi|300262713|gb|EFJ46918.1| hypothetical protein VOLCADRAFT_92718 [Volvox carteri f.
           nagariensis]
          Length = 1059

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 164/575 (28%), Positives = 268/575 (46%), Gaps = 39/575 (6%)

Query: 100 EITLLFF-YRKTEMLK-------NVFFEGRKITVTGKIKKL---KNRIIMVHPHYIFHNS 148
           EI   +F +      K       +    G +  V G ++       R  +V P  +   S
Sbjct: 421 EIEASWFDFANPRADKGLRQLRDSYIEPGSEWVVRGVMRPKPVSGPRFEVVGPDVLPAAS 480

Query: 149 QDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLP----VLPEWIEKDLLQKKSFPSIAE 204
            + +  L+   Y   T L+     ++    L  L      LPE +      +      + 
Sbjct: 481 FEPSRDLVTTTYKAATPLTAGEVAEVAEGVLGALKGGEIDLPEPLPPTARTELHRLLTSG 540

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQK 264
           + +   +  K      +   +   A  +   G  +              P++ +  +   
Sbjct: 541 STDGYCSSTKTSGSSNSRINKNASAGIDTDVGVSSGSGSSTIDTGPNWAPVSAD-PLVAA 599

Query: 265 ILRNIPFSPTKSQESAIKDILQDM--SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            ++ + F  T +Q  A+ ++L DM   + + M R+LQGDVGSGKT+VAL+AM AA   G 
Sbjct: 600 AVQALGFELTGAQRRAVGEVLGDMRPERGSTMYRLLQGDVGSGKTVVALLAMLAAASCGL 659

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE----------IITGNMPQAHRRKALERIA 372
           Q++++ P  +LAQQH+  +          V           ++TG      +R A + +A
Sbjct: 660 QSLLVVPTTVLAQQHHRNLGALMDRLPKRVRRKAGLEGEPLLLTGEAKAKEKRLAAQGLA 719

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ--KATAPHVLLMTATP 430
            G   + +GTH L     +++ L L+++DE H+FGV Q  +L+       PH+L M+ATP
Sbjct: 720 DGSILLAVGTHGLLN-LTEFHNLGLLVLDESHKFGVVQMERLSSLIAQRPPHLLNMSATP 778

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL     G +D+S++ E P GR P+ T ++  +      +   V       A W   
Sbjct: 779 IPRTLAAAMYGHMDVSRLDELPPGRTPVLTKLVQDDSDMPYRDPDAV---REMDAMWEEV 835

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             EE K  N         +  E       ++HGRM   +K + +++F+ G  +LL+ TTV
Sbjct: 836 LREELK--NAVDQATVLAARFEPLGVPTRLLHGRMKAEEKNAALEAFRGGDVRLLVCTTV 893

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +EVG+DV +A+++++E+AE FGLAQLHQLRGRVGRG     C L   P   + +  RL +
Sbjct: 894 VEVGVDVPEATVVVVEHAERFGLAQLHQLRGRVGRGGRRGMCFLCV-PFGDRAARERLGI 952

Query: 611 LKNTEDGFLIAEEDLKQRKEGEIL--GIKQSGMPK 643
           +++T DGF +AE DL+QR  G +   G +Q G   
Sbjct: 953 MEHTNDGFEVAEWDLEQRGMGHLFGSGTRQHGRMD 987


>gi|313608166|gb|EFR84210.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL F2-208]
          Length = 277

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 108/266 (40%), Positives = 171/266 (64%), Gaps = 3/266 (1%)

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL MTATPIPRTL +T+ G++D+S I E PAGRK I+T  +    +D VI  ++  + +
Sbjct: 1   DVLFMTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDK 60

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKN 539
           G + Y ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F +
Sbjct: 61  GHQVYIICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFND 120

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
                L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P 
Sbjct: 121 KKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADPK 180

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA 659
            ++    R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       LLEIA
Sbjct: 181 -TEVGKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRLLEIA 239

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILL 685
           R+DA H++ ++  L +   + +  LL
Sbjct: 240 RQDAVHMIFEEDMLENKNYEKLVALL 265


>gi|225351188|ref|ZP_03742211.1| hypothetical protein BIFPSEUDO_02778 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158644|gb|EEG71886.1| hypothetical protein BIFPSEUDO_02778 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 896

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 146/397 (36%), Positives = 212/397 (53%), Gaps = 49/397 (12%)

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
           ++ +I V ++TG+M  A RR+ L   A G   I++ THA F  S Q   L L ++DEQHR
Sbjct: 497 KDGEIPVFLLTGSMRLAERRRVLAAAASGMPCIVVATHAAFSKSFQAPNLTLAVIDEQHR 556

Query: 406 FGVQQRLKL-TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           FGV+QR  L ++ +TAPH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T ++P
Sbjct: 557 FGVEQRESLNSKGSTAPHLLVMTATPIPRTAAMTWFGDLDISSLTELPGGRKPIRTFVVP 616

Query: 465 INR---IDEVIERLKVVLSEGKKAYWICPQI----------------------------- 492
            +    + E+   ++  +  G++AY +CP+I                             
Sbjct: 617 EDNASLMGEMFALIRKRIDAGERAYVVCPRIDADAEDADGALAASAASGSETAGSSAAAF 676

Query: 493 --------------EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
                         +     +   +VER  SL +      A + GR  D  K  VM  F+
Sbjct: 677 DDAYDLGEDDDRRAQRPPLHSVAEIVERLQSLPQFKGIRFATLTGRDDDTTKSQVMADFE 736

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L+ATTVIEVG+DV  AS I+I +A+ +GL+QLHQLRGRVGRG   S   L+   
Sbjct: 737 SGITPILVATTVIEVGVDVAKASCIVIFDADRYGLSQLHQLRGRVGRGGTDSGAFLISRA 796

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLE 657
           P   ++  RL V++ T DG  IA+ DL+ R  G++LG  QSG      + +      ++E
Sbjct: 797 PADSDAARRLDVIQGTLDGAEIAQADLEFRGAGDVLGDAQSGGKSGLKLLRVVKDVKIIE 856

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
            AR +A  ++ QDPDL     Q    +L   + NE F
Sbjct: 857 HARVEATRLVAQDPDLLEHV-QLAGAVLDFTRGNETF 892



 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 91/420 (21%), Positives = 152/420 (36%), Gaps = 97/420 (23%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  P+S+             ++    +       D L Y+P    D      + E     
Sbjct: 5   LETPISSI-------ESNRRRVGALKSLGVVSVGDALTYYPFRVTDPVPARSLHEAKIGE 57

Query: 69  IVTITGYISQHSSFQLQKRR-PYKILLNDGT---------GEITLLFFYRKT---EMLKN 115
            +    ++ +   F + +R       + D              +L+FF  +    + ++ 
Sbjct: 58  KMAFAAHVLETRVFPMARRGFRLIATVTDDDFAARRNTPKSLASLVFFSYRKSYVDWVQR 117

Query: 116 VFFEGRKITVTGKIKKLKNRIIMVHPHYIFHN---------------SQDVNFPL----- 155
               G  + V G+     NR+   HP  +  N                   N PL     
Sbjct: 118 KLHAGALLVVAGEPSVYDNRLQFTHPDLLTINPVQSQSENGEWNDGFGDPANPPLGNLKY 177

Query: 156 --------------IEAVYSLPTGLSVDLFKKIIVEALSRL------------------- 182
                            VY   + +S +   + +++ +  L                   
Sbjct: 178 DAQTIDEALKRVCRPRPVYHATSRISSEHIHESVLKYMDALRGAEYLVTQNAGNFLDNPT 237

Query: 183 --------------------PVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTS 222
                                 +P+ I +D  ++      AEAF  IH+P   K+F+   
Sbjct: 238 QEGDFDIPQIDREIQIKVLGNAIPDIIPEDFREEYGLMHRAEAFMAIHDPVDRKNFDNA- 296

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
              + L Y+E L  Q AL+  R   +K        E ++    + ++PF+ T  Q+  I 
Sbjct: 297 --LQTLRYEEALICQTALVKSRDASRKSKATAC-PETRLKDDFIASLPFALTNGQQQVIA 353

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           DI  DM+    M R+LQG+VGSGKT+VA+ AM  AV +GGQAV++AP  +LA+QHY  I 
Sbjct: 354 DISADMAHDYPMQRLLQGEVGSGKTVVAVAAMMQAVGSGGQAVLVAPTQVLAEQHYASIS 413


>gi|145636878|ref|ZP_01792543.1| transcription-repair coupling factor [Haemophilus influenzae
           PittHH]
 gi|145269959|gb|EDK09897.1| transcription-repair coupling factor [Haemophilus influenzae
           PittHH]
          Length = 878

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 100/325 (30%), Positives = 163/325 (50%), Gaps = 10/325 (3%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
            K  +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 559 HKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAK--KGFAFKYDREEFQQFSATFPFE 616

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 617 ETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTIL 676

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGTH L Q  +++
Sbjct: 677 LAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKF 736

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             L L+I+DE+HRFGV Q+ K+ Q      +L +TATPIPRTL +   G  D+S I+  P
Sbjct: 737 NDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPP 796

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
           A R  IKT +   + +  V E +   +  G + Y++   +   +     +  E+  +L  
Sbjct: 797 ARRLSIKTFVRQNDDL-VVREAILREILRGGQVYYLHNDVASIE-----NTAEKLTALVP 850

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSF 537
              + + + HG+M + + E VM  F
Sbjct: 851 E--ARVIVGHGQMRERELERVMSDF 873



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 62/173 (35%), Gaps = 11/173 (6%)

Query: 408 VQQRLKLTQKATAPHV---LLMTAT-PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             QR      A           +AT P   T       +  IS + +  A  + +   + 
Sbjct: 588 YAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVCGDVG 647

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
              + +  +    + +   K+   + P I        +   E F     +   ++ ++  
Sbjct: 648 -FGKTEVAMRAAFLAVMNHKQVAVLVPTI-----LLAQQHYENFKDRFANLPVNVEVLSR 701

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATT-VIEVGIDVVDASIIIIENAEHFGLAQ 575
             +  +++ ++++   G   +LI T  +I+  +   D  ++II+    FG+ Q
Sbjct: 702 FKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQ 754


>gi|294463243|gb|ADE77157.1| unknown [Picea sitchensis]
          Length = 394

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 132/373 (35%), Positives = 206/373 (55%), Gaps = 37/373 (9%)

Query: 327 MAPIGILAQQHYEFI----KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           M P  +LA QHYE I    ++  ++ +  V  +TG+ P    R   + +  G   +++GT
Sbjct: 1   MVPTELLATQHYENIISMLERINKDDRPSVAFLTGSTPLKETRLIRKGLEMGDIALVVGT 60

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---------------------- 420
           H LF +S+ +  L   ++DEQHRFGV+Q+ + + KA                        
Sbjct: 61  HKLFSESVNFASLCFAVIDEQHRFGVEQKGRFSSKACTVMDKSGANGIKLEDGQLVANKT 120

Query: 421 ---PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--IDEVIERL 475
              PHVL+M+ATPIPRTL LT  G++ +SKI E P GR P+KT+ +  N   + +  + +
Sbjct: 121 FFAPHVLVMSATPIPRTLALTLHGNMSLSKINELPPGRIPVKTLALHGNTKGLTKTYQMV 180

Query: 476 KVVLSEGKKAYWICPQIEEKKE-SNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESV 533
           +  L  G + + + P I+E ++     +       + + F      ++HGRM   +KE  
Sbjct: 181 QKELDSGGRVFLVYPAIDESEQLPELHAAAAEIKKISKVFKGYKCGLLHGRMKTTEKEKA 240

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  FK G  ++L++T V+EVGID+ +A++++I NAE FG++QLHQ RGRVGRG   S+CI
Sbjct: 241 IQQFKEGKTQILLSTQVVEVGIDIPEATMMVIMNAERFGISQLHQFRGRVGRGTGKSTCI 300

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELH 652
           L+     S     RL +L+ + DGF +AE DL  R  G +LG +QSG +P+F IA+ +  
Sbjct: 301 LVSS---SAVGLPRLKILQQSMDGFELAEADLHLRGPGSLLGTRQSGHLPEFSIARLQTD 357

Query: 653 DSLLEIARKDAKH 665
             +LE A   A H
Sbjct: 358 GDVLEKAHFAALH 370


>gi|257893212|ref|ZP_05672865.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,408]
 gi|257829591|gb|EEV56198.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,408]
          Length = 272

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 105/271 (38%), Positives = 175/271 (64%), Gaps = 3/271 (1%)

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           MTATPIPRTL +T+ G++D+S I E PAGR PI+T  +   ++D V++  +  L+ G + 
Sbjct: 1   MTATPIPRTLAITAYGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKELARGHQM 60

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCK 543
           Y ICP IEE +  + ++ VE +  L E F     + ++HG+M + +KE +M++FK+   +
Sbjct: 61  YVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFKDNQMQ 120

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L++TTVIEVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P  ++ 
Sbjct: 121 ILVSTTVIEVGVNVPNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANPK-NEL 179

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
              R+ ++  T +GF+++E+DL+ R  GE+ G +QSG+P+F IA      ++LE+AR++A
Sbjct: 180 GVERMKIMTETTNGFVLSEKDLELRGPGEVFGFRQSGLPQFAIADLVTDGNVLEVAREEA 239

Query: 664 KHILTQDPDLTSVRGQSIRILLYLYQYNEAF 694
             +            Q +   L +   +  +
Sbjct: 240 AALWQIKNWQMLPEYQPLAQSLQIENQDNRY 270


>gi|218506539|ref|ZP_03504417.1| ATP-dependent DNA helicase protein [Rhizobium etli Brasil 5]
          Length = 226

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 85/209 (40%), Positives = 119/209 (56%), Gaps = 1/209 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K++      + R IDLLF+ P S IDR  +P 
Sbjct: 16  MRPAILDPLFSPISGLPGVGPKIAELLVKLLGRETPEDCRVIDLLFHAPFSLIDRRNQPG 75

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 76  IALSPQGAIVTITARVDRHQVPPRGKSNVPYRVFLHDETGELTLVFFRGQAAWLEKQLPI 135

Query: 120 GRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL 179
             ++TV+GK+     R  MVHP YI    +  N PL+E +Y L  GLS    +KII  AL
Sbjct: 136 DAEVTVSGKVDWFNGRASMVHPDYIVRAEEAENLPLVEPIYPLTAGLSPTTLRKIIDAAL 195

Query: 180 SRLPVLPEWIEKDLLQKKSFPSIAEAFNI 208
            R P L EWI+  L QK+  PSI ++F+ 
Sbjct: 196 PRFPELAEWIDLSLTQKQGLPSIRDSFHN 224


>gi|190150659|ref|YP_001969184.1| transcription-repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189915790|gb|ACE62042.1| transcription-repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 445

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 116/322 (36%), Positives = 176/322 (54%), Gaps = 17/322 (5%)

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           +A G+  I++GTH L Q+ +Q+  L L+I+DE+HRFGV+Q+ K+ Q      +L +TATP
Sbjct: 1   MAEGKVDILVGTHKLLQEDVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATP 60

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           IPRTL +   G  D+S I   PA R  IKT +   + +  V E +   +  G + Y++  
Sbjct: 61  IPRTLNMALNGMRDLSVIASPPARRLTIKTFVRQHDDL-IVKEAILREILRGGQVYYLHN 119

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +   +    +        L     + I I HG+M + + E VM  F +    LL+ +T+
Sbjct: 120 DVATIENCATK-----LAELVPE--ARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTI 172

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRL 608
           IE GIDV  A+ IIIE A+ FGLAQLHQLRGRVGR    +   LL  PP  L+K++  RL
Sbjct: 173 IETGIDVPTANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRL 232

Query: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             + + ++   GF++A  DL+ R  GE+LG +QSG  + +     +   LLE A K  + 
Sbjct: 233 EAISSIDNLGAGFVLATHDLEIRGAGELLGAEQSGQIESIGFSLYMD--LLENAVKALQE 290

Query: 666 ILTQDPDLTSVRGQSIRILLYL 687
              ++P L  +    + I L +
Sbjct: 291 --GREPTLEEITQNQVDIELRI 310


>gi|218461103|ref|ZP_03501194.1| ATP-dependent DNA helicase RecG [Rhizobium etli Kim 5]
          Length = 194

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 115/194 (59%), Positives = 150/194 (77%)

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             +L       I +IHGRMS  +K++ M +FKNG  +LL+AT+V+EVG+DV DA+I++IE
Sbjct: 1   HATLVAALGPDIGLIHGRMSGPEKDAAMMAFKNGESRLLVATSVVEVGVDVPDATIMVIE 60

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
           +AE FGLAQLHQLRGRVGRG+E S+CILLY  PL +  + RLS+++ TEDGF IAEEDLK
Sbjct: 61  HAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLGETGHARLSIMRETEDGFRIAEEDLK 120

Query: 627 QRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            R EGE+LG +QSG P F IA  E H  LLEIARKDA +++ +DP+LTS RGQ+IR LLY
Sbjct: 121 LRGEGELLGTRQSGTPGFRIASLEAHADLLEIARKDAAYLIERDPELTSDRGQAIRTLLY 180

Query: 687 LYQYNEAFQFIRAG 700
           L++ +EA +F+RAG
Sbjct: 181 LFRRDEAIRFLRAG 194


>gi|323449501|gb|EGB05389.1| hypothetical protein AURANDRAFT_66466 [Aureococcus anophagefferens]
          Length = 863

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 129/486 (26%), Positives = 218/486 (44%), Gaps = 57/486 (11%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAI 281
              R   A  +     + L   R    ++   P   + + A  +   + +  T  Q    
Sbjct: 188 KRDRAEAASRDHARDLLTLAAARSSRSRDACAPF--DDEAAALLEAGLGYELTAGQRQCW 245

Query: 282 KDILQDMSQK-NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340
           +D+ +DM ++   M R+    VG GKT +A+ A A AV++G Q  I+AP  +LAQQHY+ 
Sbjct: 246 EDVEEDMCRRLAPMDRL----VGFGKTELAVRAAALAVKSGRQVAILAPTTVLAQQHYKV 301

Query: 341 IKKYTQNTQIIVEIITG-------------NMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            ++  +   I VE +                      R+  E++A G+  + +GTHAL  
Sbjct: 302 FRRRLEPLGITVEFLRSPSRKYVDEATGKKASSAKECRRVREQVASGRCGVCVGTHALLS 361

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
               ++ L L ++DE+ RFGV+Q+ +L        VL ++ATPIPRTL     G  D S+
Sbjct: 362 PKQVWHTLGLAVIDEEQRFGVRQKERLKAACVDVDVLTLSATPIPRTLGAALAGLRDTSE 421

Query: 448 ITEKPAGRKPIKTVII---PINRIDE--VIERLKVVLSEGKKAYWICPQIEEKKESNFR- 501
           + + P GR    +++    P  + D+  +   L+  L+ G + +++ P+I +   +  R 
Sbjct: 422 LPDPPPGRGETSSLVARDQPGRKEDDYFLTAILEKELARGGQCFYVVPRIADVPAARRRL 481

Query: 502 ------------------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC- 542
                                +  +   +    +IA+ HGR+ D    +V+  F  G   
Sbjct: 482 LGALRAIGHPAAARVDAPGEPDDDDDAEDPSGGAIAVAHGRVDDPA--AVVADFAAGDNE 539

Query: 543 --KLLIAT----TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
              +L+AT      +E G+D+   + I+I++A  FGLA LHQLRGRVGRGE  +  + LY
Sbjct: 540 TRPVLLATTLVENCVENGLDLPRCNTIVIQDAHRFGLASLHQLRGRVGRGERKALAVFLY 599

Query: 597 HPPLSKNSYTRLSVLK----NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
               +        +      + + G  +A  DL+ R  G +LG +QSG     +      
Sbjct: 600 PRDGATTDAAAARLRAVADVDAKSGPELARRDLEIRGAGALLGTRQSGRASRDVGDEMYA 659

Query: 653 DSLLEI 658
             L+E 
Sbjct: 660 KLLVEE 665


>gi|23013145|ref|ZP_00053081.1| COG1200: RecG-like helicase [Magnetospirillum magnetotacticum MS-1]
          Length = 205

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 100/196 (51%), Positives = 139/196 (70%)

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           ER   L + F   + ++HGRM    K+ VM  F  G   +L+ATTVIEVG+DV +A+I++
Sbjct: 10  ERHRHLSQMFGDRVGLVHGRMKPTAKDKVMAEFAAGNLDILVATTVIEVGVDVPEANIMV 69

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           IE+AE FGLAQLHQLRGRVGRG   S C+LLY  PL + +  RL +++ TEDGF IAEED
Sbjct: 70  IEHAERFGLAQLHQLRGRVGRGSRESRCLLLYGHPLGEIAKARLEIMRATEDGFRIAEED 129

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
           L+ R  GE+LG +QSG+P+F +A   +H  LL  AR DA+ IL +DP+L S RG+++R+L
Sbjct: 130 LRLRGGGEMLGTRQSGLPEFRLADLAIHGELLAAARDDARLILERDPELASPRGEALRVL 189

Query: 685 LYLYQYNEAFQFIRAG 700
           LYL++ + A + +R+G
Sbjct: 190 LYLFERDAAVRTLRSG 205


>gi|309808651|ref|ZP_07702543.1| DEAD/DEAH box helicase [Lactobacillus iners LactinV 01V1-a]
 gi|308168125|gb|EFO70251.1| DEAD/DEAH box helicase [Lactobacillus iners LactinV 01V1-a]
          Length = 285

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 106/285 (37%), Positives = 173/285 (60%), Gaps = 1/285 (0%)

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
           + D++   RM R+LQGDVGSGKT+VA+ A+ A + AG Q  +M P  ILAQQH   I   
Sbjct: 1   MADLASAKRMNRLLQGDVGSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAI 60

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
            +   +   ++T +     +++    +  G  +++IGTHA+ QD + + KL LVI+DEQH
Sbjct: 61  LEPLGVRCALLTSSTKLNEKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQH 120

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           RFGV QR +L  K     +L M+ATPIPRTL L+  G+  +S+I + P GRK + +  I 
Sbjct: 121 RFGVDQRKQLLNKGKMVDILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWIT 180

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF-TSSIAIIHG 523
            + + +++  +   L +G + Y + P I E  + + ++    +  +  +F +  +A++HG
Sbjct: 181 SDSLRKLLTLMNEQLEQGFQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHG 240

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           +M    K  +MD+F +G+ K+LI T+VIEVG+DV +A+++II N 
Sbjct: 241 KMGSSQKSDIMDAFIHGSIKILITTSVIEVGVDVANANMMIIFNC 285


>gi|257459507|ref|ZP_05624616.1| ATP-dependent DNA helicase RecG [Campylobacter gracilis RM3268]
 gi|257442932|gb|EEV18066.1| ATP-dependent DNA helicase RecG [Campylobacter gracilis RM3268]
          Length = 986

 Score =  229 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 150/446 (33%), Positives = 217/446 (48%), Gaps = 35/446 (7%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
             L + E+L   +  L  +K        P+          L ++PF PT+ Q SAIKDI 
Sbjct: 567 RTLKFVEILNY-LQKLSAKKTSFPAQIYPLRDISDW----LASLPFEPTRDQLSAIKDIA 621

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYT 345
            D+       R++ GDVGSGKTLV L   +AA+     + +MAP  ILA+Q Y   ++  
Sbjct: 622 SDLQSPLARRRVVMGDVGSGKTLVIL--ASAAMNYPRISYLMAPTSILAEQIYAEARRLL 679

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
              QI V ++                    AH+IIGTHAL    +    LI+  VDEQHR
Sbjct: 680 -PPQIKVLLVKSGD---------REPNFADAHLIIGTHALLYHELAPSNLIM--VDEQHR 727

Query: 406 FGVQQRLKLTQKATA----PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           FG  QR K+ +         H +  +ATPIPRTL +     +  S + + P   K IKT 
Sbjct: 728 FGSNQREKIARLTENGEFRAHFIQFSATPIPRTLSMIQSELVSFSFLKQLPF-EKRIKTK 786

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           I+  +     ++ L+  L+ G +A  + P +++ + S ++S+ E        F + + I 
Sbjct: 787 ILQNDGFTGFMQDLRRELAAGNQAIIVYPLVQQSESSVYQSLEEAAPFWKAQF-ADVMIT 845

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG  SD DKE ++  F++   +LLI TT++EVGI +   S+I+I  AE  GLA LHQLRG
Sbjct: 846 HG--SDKDKEEILRRFRD-DGRLLITTTIVEVGISLPRLSVILIVGAERMGLASLHQLRG 902

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK-QSG 640
           RVGR  +   C L        +   RL     T DGF +A  DLK R+ G++LG   Q G
Sbjct: 903 RVGRKGQAGRCYLYTKLK---SPPQRLREFAATLDGFKVANIDLKNRQGGDLLGGSVQHG 959

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHI 666
              F     E   +    A++  K I
Sbjct: 960 AM-FAWYDYEEDVT--AAAKQRLKDI 982



 Score = 44.3 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 82  FQLQKRRPYKILLNDGT--GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMV 139
           FQ ++     +  +  +   EI ++ F  K       F  G+K  + GK  +       V
Sbjct: 52  FQHRRGSMLIVTAHCLSWEREIKIVIFNAK-SWHFGAFKRGKKFFIHGKCDESFGSWQFV 110

Query: 140 HPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL 185
           +P  +           I   Y     LS    +K+I + LS   +L
Sbjct: 111 NPKIVSEP------GRIAPKY--KAALSDAAAQKLIKKYLSADALL 148


>gi|225011287|ref|ZP_03701744.1| helicase domain protein [Flavobacteria bacterium MS024-3C]
 gi|225004597|gb|EEG42562.1| helicase domain protein [Flavobacteria bacterium MS024-3C]
          Length = 465

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 99/301 (32%), Positives = 160/301 (53%), Gaps = 15/301 (4%)

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           ER+ +G+  I+IGTH L   ++++  L L+IVDE+ +FGV  + KL        VL +TA
Sbjct: 1   ERLENGRIDIVIGTHQLVNKAVKFKDLGLLIVDEEQKFGVGVKDKLKSLKENVDVLTLTA 60

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           TPIPRTL  + +   D+S I   P  R PI++ ++  N    + E +   +    + ++I
Sbjct: 61  TPIPRTLQFSLMAARDLSVINTAPPNRYPIESNVVRFNET-LIREAISYEIQRDGQVFFI 119

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +IE   E            L     + + I HG+M     E++M +F  G   +L++T
Sbjct: 120 HNRIENITEVAG-----LIQRLVPD--ARVGIGHGQMEGKKLENLMKAFMGGEFDVLVST 172

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYT 606
           T+IE G+DV +A+ I I NA +FGL+ LHQ+RGRVGR  + + C  +  P   ++ ++  
Sbjct: 173 TIIESGLDVSNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYEVMTADARK 232

Query: 607 RLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           R+  L+       GF IA +DL+ R  G+ILG +QSG    +    E +  ++  A  + 
Sbjct: 233 RIQALEQFTALGSGFNIAMKDLEIRGAGDILGGEQSGFINEI--GFETYQKIMAEAIDEL 290

Query: 664 K 664
           K
Sbjct: 291 K 291


>gi|218513284|ref|ZP_03510124.1| transcription-repair coupling factor [Rhizobium etli 8C-3]
          Length = 338

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 84/274 (30%), Positives = 146/274 (53%), Gaps = 3/274 (1%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EWT   R+  +  E +A  +  L   ++ +   G     +    ++     P+S T  Q 
Sbjct: 68  EWTKTKRKVSSKIEDIADDLIKLYAARESE--KGYAFGPDDAYQKEFENAFPYSETDDQL 125

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +  +I +DM ++  M R+L GDVG GKT VAL A   A++   Q   + P  ILAQQHY
Sbjct: 126 RSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQVAFLVPTTILAQQHY 185

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E + +  +   + + +++    +  +++ +E++  GQ  I++GTH +    I++  L L+
Sbjct: 186 ETMLERFEGFPVNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGTHRILSKDIEFSDLGLL 245

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           I+DE+ RFGV+ + +L Q      VL +TATPIPRTL ++ LG  D+S I   PA R PI
Sbjct: 246 IIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPI 305

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +T ++  N    + E +   +  G + +++  ++
Sbjct: 306 QTYVMEKN-PGAIREAIHREMGRGGQVFYLYNRV 338


>gi|325473855|gb|EGC77043.1| hypothetical protein HMPREF9353_01391 [Treponema denticola F0402]
          Length = 437

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 105/293 (35%), Positives = 164/293 (55%), Gaps = 15/293 (5%)

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I+IGTH + Q  + +  L L+IVDE+ RFGV+ + +L Q       L ++ATPIPRTL 
Sbjct: 2   DILIGTHRIIQKDVVFKDLGLMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLH 61

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           ++ L   D+S I   P  RKP++TVI   N  ++V E ++     G + +++  ++E   
Sbjct: 62  MSLLKIRDMSVIATPPQNRKPVETVIAEFN-AEKVAEVIRRESERGGQVFYLHNRVESLD 120

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           E+ F        SL       I   HG+MS    E + + F  G  ++LIATT+IE GID
Sbjct: 121 ETLF-----MLQSLLPEIM--IETAHGQMSPNQLEEIFERFSLGGFQVLIATTIIENGID 173

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
           + +A+ III+ A+ +G++QL+QLRGRVGR ++ +   LLY     LS+ +  RL V+ + 
Sbjct: 174 IPNANTIIIDRADMYGVSQLYQLRGRVGRSDKKAYAYLLYPDDKALSEIAMKRLQVISDF 233

Query: 615 E---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
                GF IA +D++ R  G +LG +QSG         +L+  LL+ A +  +
Sbjct: 234 TELGSGFKIAMKDMEIRGAGNLLGREQSG--DIYSVGFDLYLRLLDEAVQKLQ 284


>gi|291517427|emb|CBK71043.1| RecG-like helicase [Bifidobacterium longum subsp. longum F8]
          Length = 877

 Score =  227 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 135/332 (40%), Positives = 192/332 (57%), Gaps = 14/332 (4%)

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           EALS+   +P+ + + + + K+    AEAF  IH+P     F+      E L Y+E    
Sbjct: 289 EALSQ--SIPDVLPESVRKAKNLMHRAEAFLAIHDPASTTRFKEAI---ETLRYEEAFVS 343

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q +LL  R    K        V   +  + + ++PFS T  Q+  I DI  D++    M 
Sbjct: 344 QTSLLKARSHAHKSAAHSCPLVTDSLRDQFIASLPFSLTAGQQQVIHDIAADLAHDWPMQ 403

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN--TQIIVE 353
           R+LQG+VGSGKT+VAL AM  AV+AG QAV++AP  +LA+QH E I +  +     I V 
Sbjct: 404 RLLQGEVGSGKTVVALAAMLQAVDAGYQAVLVAPTQVLAEQHAETIGRMVEQLKPAIPVT 463

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG M  A RRKAL   + G+  II+ THA F  + Q   L LV++DEQHRFGV+QR  
Sbjct: 464 LLTGGMKLAARRKALAAASSGEPGIIVATHAAFSKTFQAPHLALVVIDEQHRFGVEQRES 523

Query: 414 L---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII---PINR 467
           L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+TV++       
Sbjct: 524 LNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTVVVNEADAAT 583

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           +  +   ++  +  G++AY +CP+I+   E N
Sbjct: 584 MGRMFAHIRARVDAGERAYIVCPRIDADDEEN 615



 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 99/191 (51%), Gaps = 2/191 (1%)

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS I+
Sbjct: 684 DRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASCIV 743

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+ D
Sbjct: 744 IFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQAD 803

Query: 625 LKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+ R  G++LG  QSG      + +      ++  AR  A  +L  DP+L     Q    
Sbjct: 804 LEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAGQLLAADPELAG-EVQLAGA 862

Query: 684 LLYLYQYNEAF 694
           +L   + NE F
Sbjct: 863 VLDFTRGNETF 873



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 40/142 (28%), Gaps = 14/142 (9%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P    +      I E +  + +     I       +  R
Sbjct: 17  RRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMAFAAVIRDMRVVPMNAR 76

Query: 88  RPYK--ILLNDGT---------GEITLLFFYRKTEMLKNV---FFEGRKITVTGKIKKLK 133
           R Y+    ++D               L FF  +   +  V      G  + V+G   +  
Sbjct: 77  RGYRLEATVDDADFARSRRAPGSTARLTFFSYRKSYVDWVSMRLRAGTSVVVSGMPSEYM 136

Query: 134 NRIIMVHPHYIFHNSQDVNFPL 155
            ++   HP  +           
Sbjct: 137 GQLQFTHPEILTVAPGSAGTGA 158


>gi|296453487|ref|YP_003660630.1| DEAD/DEAH box helicase domain-containing protein [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296182918|gb|ADG99799.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 877

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 135/332 (40%), Positives = 192/332 (57%), Gaps = 14/332 (4%)

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           EALS+   +P+ + + + + K+    AEAF  IH+P     F+      E L Y+E    
Sbjct: 289 EALSQ--SIPDVLPESVRKAKNLMHRAEAFLAIHDPASTTRFKEAI---ETLRYEEAFVS 343

Query: 237 QIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
           Q +LL  R    K        V   +  + + ++PFS T  Q+  I DI  D++    M 
Sbjct: 344 QTSLLKARSHAHKSAAHSCPLVTDSLRDQFIASLPFSLTAGQQQVIHDIAADLAHDWPMQ 403

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN--TQIIVE 353
           R+LQG+VGSGKT+VAL AM  AV+AG QAV++AP  +LA+QH E I +  +     I V 
Sbjct: 404 RLLQGEVGSGKTVVALAAMLQAVDAGYQAVLVAPTQVLAEQHAETIGRMVEQLKPAIPVT 463

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++TG M  A RRKAL   + G+  II+ THA F  + Q   L LV++DEQHRFGV+QR  
Sbjct: 464 LLTGGMKLAARRKALAAASSGEPGIIVATHAAFSKTFQAPHLALVVIDEQHRFGVEQRES 523

Query: 414 L---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII---PINR 467
           L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+TV++       
Sbjct: 524 LNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTVVVNEADAAT 583

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           +  +   ++  +  G++AY +CP+I+   E N
Sbjct: 584 MGRMFAHIRARVDAGERAYIVCPRIDADDEGN 615



 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 100/191 (52%), Gaps = 2/191 (1%)

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS I+
Sbjct: 684 DRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASCIV 743

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+ D
Sbjct: 744 IFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQAD 803

Query: 625 LKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+ R  G++LG  QSG      + +      ++  AR  A+ +L  DP+L     Q    
Sbjct: 804 LEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAEQLLAADPELAD-EVQLAGA 862

Query: 684 LLYLYQYNEAF 694
           +L   + NE F
Sbjct: 863 VLDFTRGNETF 873



 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 14/131 (10%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P    +      I E +  + +     I       +  R
Sbjct: 17  RRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMAFAAVIRDMRVVPMNAR 76

Query: 88  RPYK--ILLNDGT---------GEITLLFFYRKTEMLKNV---FFEGRKITVTGKIKKLK 133
           R Y+    ++D               L FF  +   +  V      G  + V+G   +  
Sbjct: 77  RGYRLEATVDDADFARSRRVPGSTARLTFFSYRKSYVDWVSMRLRAGTSVVVSGMPSEYM 136

Query: 134 NRIIMVHPHYI 144
            ++   HP  +
Sbjct: 137 GQLQFTHPEIL 147


>gi|261884470|ref|ZP_06008509.1| transcription-repair coupling factor [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 325

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 79/277 (28%), Positives = 142/277 (51%), Gaps = 3/277 (1%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           +W     +     + +A ++  L  +++ +   G   + +  + +      P+  T+ Q 
Sbjct: 48  DWKKTKPKVSNAVKDIADELIKLYAKREAE--KGFAFDKDDDLQRSFENAFPYEETEDQL 105

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I+++ +DM +   M R++ GDVG GKT VA+     AV  G Q   + P  ILAQQHY
Sbjct: 106 RSIEEVKRDMERSRPMDRLICGDVGYGKTEVAIRGAFKAVNNGKQVAFLVPTTILAQQHY 165

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K       I V +++    +  + + ++ +  G   +++GTH +    + Y  L L+
Sbjct: 166 ETMKARFAGYPIEVGLLSRFRTKKQQPETIKGLKDGTIDVVVGTHRILSKDVVYRDLGLL 225

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           IVDE+ RFGV  + K+ Q  T   VL +TATPIPRTL ++ +G  D+S I   PA R P+
Sbjct: 226 IVDEEQRFGVSHKEKIKQLKTNVDVLTLTATPIPRTLHMSMIGVRDLSVIETPPANRFPV 285

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           +T ++  N    V E ++  ++ G + +++  +    
Sbjct: 286 QTYVMEFNG-ALVREAIEREMARGGQVFYLYNRTCRH 321


>gi|254993542|ref|ZP_05275732.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J2-064]
          Length = 259

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 94/245 (38%), Positives = 153/245 (62%), Gaps = 3/245 (1%)

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
           +D+S I E PAGRK I+T  +    +D VI  ++  + +G + Y ICP IEE ++ + ++
Sbjct: 4   MDVSIIDELPAGRKEIETYWVKHQMLDRVIGFMEKEIDKGHQVYIICPLIEESEKLDVQN 63

Query: 503 VVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            ++ FN L   + +     ++HG++   DKE +M  F N     L++TTV+EVG++V +A
Sbjct: 64  AIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFNNKKIDCLVSTTVVEVGVNVPNA 123

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           ++++I +A+ FGLAQLHQLRGRVGRG   S CIL+  P  ++    R+ ++  T DGF++
Sbjct: 124 TMMVIYDADRFGLAQLHQLRGRVGRGANQSYCILIADPK-TEVGKERMMIMSETNDGFVV 182

Query: 621 AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQS 680
           +E DL+ R  G+  G KQSG+P+F +A       +LEIAR+DA H++ ++  L +   + 
Sbjct: 183 SERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEIARQDAVHMIFEEDMLENKNYEK 242

Query: 681 IRILL 685
           +  LL
Sbjct: 243 LVALL 247


>gi|121610609|ref|YP_998416.1| helicase domain-containing protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121555249|gb|ABM59398.1| helicase domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 629

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 147/638 (23%), Positives = 272/638 (42%), Gaps = 69/638 (10%)

Query: 45  LFYHPSSFIDRHY-RPKISEISEERIVTITGYISQHSSFQLQK---RRP----------- 89
           L   P ++ID+     +I     ER     G + +           R P           
Sbjct: 22  LLCLPKTYIDKTRAHERIHRAPAERAALFQGKLVRCRGLNADGQATRSPFARFARFAHSV 81

Query: 90  -YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS 148
              +   D +  + +  F  + E L  +    + I +     +   R +   P  +   +
Sbjct: 82  ELTVDFADASA-MRVRLFGARIEELAAL--VDQTIVL-----QACARPLANGPTSLHGAT 133

Query: 149 QDVNFPLIEAVY-SLPTGLSVDLFKKIIVEALSRLPVLPE-------WIEKDLLQKKSFP 200
                  IE  Y  +P G+S    +  +  AL     L +           + +  +   
Sbjct: 134 LAAVTGCIEPQYVGVPGGISGQKIRCAVHAALGIEGSLDQAALLLQGNAPIESVLHEHGI 193

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260
           +       +H P   +  +            E+ +  +A              P +++  
Sbjct: 194 TARALLQDLHRPATLRAGDTALAIARACVVREIRSAAVAS------RVVAAPCPYDIDQH 247

Query: 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE- 319
           +   +      + ++ Q  A+  I   ++ +     +L GDVG+GKTLV L+A+AA    
Sbjct: 248 LIALVAAQ-KETLSQDQRRALNAIRLQVNDRRGARILLNGDVGTGKTLVFLLALAAIAST 306

Query: 320 AGGQAVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           +G +  ++ P  ++A Q H +   ++ Q    +V   +G++P               + +
Sbjct: 307 SGKRVAVVVPSDLVARQIHAQAQARFPQLQPCLVMAGSGDVPD-------------DSLM 353

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           +IGT ALF  + ++ +L  ++VDEQH+F V QR  L +  T  HV+  +ATPIPR+L L 
Sbjct: 354 LIGTQALFHRA-EHLELEALVVDEQHKFSVAQRTVLARGHT--HVIEASATPIPRSLALA 410

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                   +I   P  +  +  + +P +R  +V+      L  G K  ++ P+++ +   
Sbjct: 411 IFDGWMQVRIVNCPVQKTIVSRIAMPESRR-KVVALAHAHLQRGHKVVFLYPKVDGQGA- 468

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             R+  ER +    HF   +A++HG+M    KES + +F +G   ++ A+T +EVG+DV 
Sbjct: 469 TVRAAGERLDK---HFQGKVAVVHGQMGRDAKESALKAFASGERPIIAASTAVEVGVDVP 525

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           D  ++++  A+ F +AQLHQLRGR+ R    +  +++     SK +  RL  +    DGF
Sbjct: 526 DIGLMVVSGADRFAVAQLHQLRGRLARNGGKAHFVMMLDKKPSKLTELRLRAVCQHADGF 585

Query: 619 LIAEEDLKQRKEGEILGIKQSG-------MPKFLIAQP 649
            +AE D++ R  G++LG  QSG       +P+  +A  
Sbjct: 586 SLAERDMELRGFGDVLGDLQSGQSSATFKLPRLQVADF 623


>gi|206895775|ref|YP_002247109.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase
           mfd), putative [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738392|gb|ACI17470.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase
           mfd), putative [Coprothermobacter proteolyticus DSM
           5265]
          Length = 849

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 127/461 (27%), Positives = 208/461 (45%), Gaps = 33/461 (7%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMR-KQFKKEIGIPINVEGKIAQKILRNIPFS 272
                     +R+  A  +      + L  R KQ K      I  + +I     ++  F 
Sbjct: 296 SIDSLGPARWSRKSRALQQRALKMRSFLENRFKQKKSTQSFTIEPDEEIESAFAQSFQFE 355

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  Q+ A +++   ++  +    ++ G+ G GKT V + A  A   AG +AVI+ P  +
Sbjct: 356 ETSDQKQATEELHAWLAIPHPEEALIIGESGVGKTEVLMRAAVAVASAGYKAVIVVPTRV 415

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           L  Q+     +  Q+  +                 L         I++GTH+L +  +  
Sbjct: 416 LVDQYMAAYSERIQSCGL----------------LLSDDPALPWDILVGTHSLLKKQLYD 459

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            KL LVI DE+ +FGV  +    +      V+  +ATPIPRT  L   G + + ++ E P
Sbjct: 460 DKLALVIFDEEQKFGVTHKNWFQEHFPWVKVIFSSATPIPRTFFLARRGYVKLIRMHELP 519

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE 512
            GR+ + TV       D V + L   L  G    +I P IE            R   L +
Sbjct: 520 YGRQKV-TVFADEYSPDLVRKVLSDELDRGGLVIYIHPTIEGIDL--------RALELQQ 570

Query: 513 HF-TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            F  + I ++H RM+D   +S+    + G   +L+ATT++E G+D+  A+ I++E+A H 
Sbjct: 571 MFLDAEIEVLHARMTDKRIKSIFKKLQEGKIDILVATTIMEAGVDLPIANTIVVEDATHL 630

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV---LKNTEDGFLIAEEDLKQR 628
           G++Q++QL+GRVGR         LY P  S  + +R+     L N  D + +AE D + R
Sbjct: 631 GVSQMYQLKGRVGRNSVKGYAWFLYPPTASPATRSRIHSTVKLLNYSDSYALAELDTRYR 690

Query: 629 KEGEILGIKQSGMPKFLIAQPELHDSLLEIA-RKDAKHILT 668
             GEI GI+Q G+           D+LLE   R++   I++
Sbjct: 691 GIGEIFGIRQHGL--VKQEDVFAVDALLEQTYREEETEIVS 729


>gi|291457129|ref|ZP_06596519.1| ATP-dependent DNA helicase [Bifidobacterium breve DSM 20213]
 gi|291380964|gb|EFE88482.1| ATP-dependent DNA helicase [Bifidobacterium breve DSM 20213]
          Length = 880

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 131/334 (39%), Positives = 186/334 (55%), Gaps = 22/334 (6%)

Query: 185 LPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR 244
           +P+ + K +   K     AEAF  IH+P     F+      E L Y+E    Q +LL  R
Sbjct: 289 IPDILPKSIRAAKGLLHRAEAFLAIHDPDSTVRFKEAI---ETLRYEEAFVSQASLLKAR 345

Query: 245 KQFKKEIGIPINVEGKI-------------AQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           +   K    P  + G                 + + ++PF  T  Q   ++DI  D+++ 
Sbjct: 346 QHAHKSSAHPCLLNGDNETGAASTMDVTNLRDRFIASLPFELTAGQHQVVEDIAADLARD 405

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             M R+LQG+VGSGKT+VAL AM   V AG QAV++AP  +LA+QH+E I K   +  + 
Sbjct: 406 WPMQRLLQGEVGSGKTVVALAAMLQVVGAGYQAVLVAPTQVLAEQHFETIGKMVADLNVP 465

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQR 411
           V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++DEQHRFGV+QR
Sbjct: 466 VTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQHRFGVEQR 525

Query: 412 LKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII---PI 465
             L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+TV++     
Sbjct: 526 ESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTVVVNEADA 585

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             +  +   ++  +  G++AY ICP+I+   E +
Sbjct: 586 GTMGRMFAHIRARVDAGERAYIICPRIDTDDEDD 619



 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 101/191 (52%), Gaps = 2/191 (1%)

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +R   L +      A + GR  D  K  VM  F +G   +L++TTVIEVG+DV  AS I+
Sbjct: 687 DRLQKLPQFAGIRFATLTGRDKDDVKTQVMADFASGETPILVSTTVIEVGVDVKQASCIV 746

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ N+ DG  IA+ D
Sbjct: 747 IFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHNSLDGVEIAQAD 806

Query: 625 LKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+ R  G++LG  QSG      + +      ++  AR  A+ +L  DP+L     Q    
Sbjct: 807 LEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAEQLLEADPELAG-EVQLAGA 865

Query: 684 LLYLYQYNEAF 694
           +L   + NE F
Sbjct: 866 VLDFTRGNETF 876



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 14/129 (10%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +   T   + L Y+P    +      I E    + +     I       +  R
Sbjct: 29  RRVSALKSLGVTTVGEALTYYPFRVTEPVPLRTIREAVPGQTMAFAATIRDMRVIPMNAR 88

Query: 88  RPYK--ILLNDGT---------GEITLLFFYRKT---EMLKNVFFEGRKITVTGKIKKLK 133
           R Y+    ++D           G   L FF  +    + +      G  + V+G   +  
Sbjct: 89  RGYRLEATVDDAAFARSRNMAGGLARLTFFSYRKSYVDWVSTRLRAGTTVVVSGMPSEYM 148

Query: 134 NRIIMVHPH 142
            ++   HP 
Sbjct: 149 GQLQFTHPD 157


>gi|226327605|ref|ZP_03803123.1| hypothetical protein PROPEN_01476 [Proteus penneri ATCC 35198]
 gi|225204131|gb|EEG86485.1| hypothetical protein PROPEN_01476 [Proteus penneri ATCC 35198]
          Length = 257

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 104/259 (40%), Positives = 162/259 (62%), Gaps = 4/259 (1%)

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE-GKKAYWICPQIEEK 495
           +T+  D+D S I E P GR P+ TV IP  R +++IER+++  +E  ++AYW+C  IE+ 
Sbjct: 1   MTAYADMDTSIIDELPPGRTPVTTVAIPDTRRNDIIERIRLACTEEKRQAYWVCTLIEDS 60

Query: 496 KESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                ++    ++ L        + ++HGRM   +K++VM +FK    +LL+ATTVIEVG
Sbjct: 61  DVLEAQAAQVIYDELTIALPEIKVGLVHGRMKPAEKQAVMTAFKENELQLLVATTVIEVG 120

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV +AS++II+N E  GLAQLHQLRGRVGRG   S C+LLY  PL++ +  RL VL+++
Sbjct: 121 VDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAIASHCVLLYKTPLTQTARLRLQVLRDS 180

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            DGF+IA++DL+ R  GE+LG KQ+G  +F +A       L+   ++ A+++    P  +
Sbjct: 181 NDGFVIAQKDLEIRGPGELLGTKQTGNAQFKVADLLRDQGLVPEVQRIARYLHQHYPKHS 240

Query: 675 SVRGQSIRILLYLYQYNEA 693
             +    R L    QY++A
Sbjct: 241 --QALIERWLPAKTQYSQA 257


>gi|58616181|ref|YP_195310.1| ATP-dependent DNA helicase [Azoarcus sp. EbN1]
 gi|56315642|emb|CAI10286.1| ATP-dependent DNA helicase [Aromatoleum aromaticum EbN1]
          Length = 513

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 223/472 (47%), Gaps = 42/472 (8%)

Query: 206 FNIIHNPRKAKDFEWTSPARERLAYDELLAGQ--IALLLMRKQFKKEIGIPINVEGKIAQ 263
              +H P   ++ E      E LA    L  Q  +      K  +      I ++ +   
Sbjct: 58  LLALHAPNSVREGE------EALAITRELCVQSIVKAAQANKITRNVPASSIPIQDEEVA 111

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           K+L  +P++ TK Q+ AI++I  D+  K  M R+L GDVG+GKTLV LI + AA  AG +
Sbjct: 112 KLLSALPYTLTKDQQIAIQEITADLRSKRPMNRLLAGDVGTGKTLVFLIPLVAAHLAGAR 171

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             +M    +L +Q    + +Y  +                  K L          +IG  
Sbjct: 172 VAVMTANQLLVEQALRELAEYFPDVPTFQV--------KPGTKDLPNAILIGTTSVIGAL 223

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
           A  + ++ +     V+ DEQH+F V Q+  L  + T  ++L  TAT IPRTL +   G +
Sbjct: 224 ARVKGTLDF-----VVTDEQHKFAVSQKQSLMDEHT--NLLEATATAIPRTLAVVQFGGM 276

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           D+S + E P  +K I + I+  +  D +++ +K V + G++   +   +    E   +S+
Sbjct: 277 DVSLLRECPV-QKDIASRIVLSHEKDRLLDFIKKVAAAGRQTAIVYAAVNAGSE--GKSI 333

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +      +HF   +AI HG+M   +K+  +   ++    +L+++TVIEVGI +   + +
Sbjct: 334 EDNAAKWLKHFPDQVAIAHGQMPAEEKQEALRQMRDKEKLILVSSTVIEVGITLPSLACL 393

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN--------------SYTRLS 609
           I+ NAE FG+AQLHQLRGRV R        L    P++ +              +  RL 
Sbjct: 394 IVVNAERFGVAQLHQLRGRVSRHGGRGYFFLYLPQPVTDDEDDDAAYGKTAADRTMKRLQ 453

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEI--LGIKQSGMPKFLIAQPELHDSLLEIA 659
           +L +  +GF +AE+D + R  G++   G  Q G   FL    ++H   L+ A
Sbjct: 454 LLVDHSNGFDLAEKDAELRGLGDLSSTGSSQHGKTAFLFPNLKIHVHELKKA 505


>gi|122936787|dbj|BAF45214.1| transcription-repair coupling factor [uncultured bacterium]
          Length = 479

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 164/334 (49%), Gaps = 17/334 (5%)

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
                    + +  +++  G+  I+IGTH L   SI+Y  L L+I+DE+HRFGV+Q+  L
Sbjct: 18  CHXFQTTKEQTRIKQQLLEGKVDIVIGTHKLIHGSIKYKNLGLIIIDEEHRFGVKQKESL 77

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +      +L MTATPIPRTL +      ++S I   P GR  I+T +   +    + E 
Sbjct: 78  KKIRGQSDILTMTATPIPRTLNMALGSLRELSIIATPPQGRSAIQTFVNEWSD-ATIKEV 136

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
               L  G + + +   I+        ++ ER  SL  +  + + I HG+M   + E +M
Sbjct: 137 CSRELHRGGQIFVLHNDIDSID-----NMAERLTSLIPN--ARVRIAHGQMPTRELEQIM 189

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F +G  ++L+ TT+IE GID+ +A+ III NA++FG   +  +            C+ 
Sbjct: 190 SDFYHGRFQILVCTTIIETGIDIPNANTIIINNAQNFGFGAIAPIAWASLSFTSSGVCVF 249

Query: 595 --LYHPPLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
               H  LSKN+  RL  +++ E+   GF++A  DL+ R  G++LG  QSG    +    
Sbjct: 250 GDKSHQSLSKNAKKRLDAVESLEELGAGFMLANHDLEIRGAGDLLGDNQSGKISEIGFN- 308

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            ++  LL+      +  + +  +L +     I I
Sbjct: 309 -MYHDLLKRTVDAMR--VGRKINLNNPLNHEIEI 339


>gi|13235378|emb|CAC33727.1| RecG protein [Rickettsia typhi]
          Length = 355

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 109/361 (30%), Positives = 173/361 (47%), Gaps = 33/361 (9%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LFAP+  F  + +       ++            DLLFY P S+ ++   P ++E+    
Sbjct: 10  LFAPVKAFINIREDTVSAFKRL------GINNIRDLLFYLPVSYQNKILSPNLTEVRGGE 63

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+     I    + Q +  +P KI  ++ TG I L+FF++  + + N    G K  ++GK
Sbjct: 64  IIQTE-IIVNSINLQKKGNQPLKITASNNTGSILLVFFHKPPQFILNKLKVGTKHIISGK 122

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++    ++ ++HP +I +         IE +YS+   LS       I++A+       + 
Sbjct: 123 VQFFNYQLQILHPEFITNPK---LSKAIEPLYSITYSLSNKQLYSYIIKAIEIFEEKCKG 179

Query: 189 IEKDLLQKK------------------SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
           IE   + +                   +  S +   +I+ NPR A     T  A+++LA 
Sbjct: 180 IEDKEVHEYLDVILQNLKILHVFFSPHNLISWSSTMDIVVNPRYA-----TVAAKKQLAI 234

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            EL+A QI+LL +R Q  ++ G        I   ILR + F  T  Q+  I++I  + S 
Sbjct: 235 KELIANQISLLNVRMQINRKQGNIYPKATSIQDNILRELGFELTYYQKQVIEEIESEQSD 294

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           K  M+R+LQGDVGSGKTLVAL+ M   V  G QA +MAP  +LA QHY+F  K  +NT I
Sbjct: 295 KVEMMRLLQGDVGSGKTLVALLTMVNVVTTGLQATLMAPTDLLANQHYDFFVKALKNTNI 354

Query: 351 I 351
            
Sbjct: 355 K 355


>gi|218514234|ref|ZP_03511074.1| ATP-dependent DNA helicase protein [Rhizobium etli 8C-3]
          Length = 167

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 107/167 (64%), Positives = 136/167 (81%)

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M +FKNG  +LL+ATTV+EVG+DV DA+I++IE+AE FGLAQLHQLRGRVGRG+E S+CI
Sbjct: 1   MMAFKNGETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCI 60

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
           LLY  PL +  + RLS+++ TEDGF IAEEDLK R EGE+LG +QSG P F IA  E H 
Sbjct: 61  LLYKGPLGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHA 120

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
            LLEIARKDA +++ +DP+LTS RGQ+IR LLYL++ +EA +F+RAG
Sbjct: 121 DLLEIARKDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFLRAG 167


>gi|213420794|ref|ZP_03353860.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 367

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/245 (32%), Positives = 124/245 (50%), Gaps = 2/245 (0%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 125 WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 182

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 183 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 242

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             +    N  + +E+++       + + L   A G+  I+IGTH L Q  ++   L L+I
Sbjct: 243 NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 302

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           VDE+HRFGV+ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +K
Sbjct: 303 VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 362

Query: 460 TVIIP 464
           T +  
Sbjct: 363 TFVRE 367


>gi|13235400|emb|CAC33599.1| RecG protein [Rickettsia montanensis]
          Length = 367

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 104/369 (28%), Positives = 166/369 (44%), Gaps = 36/369 (9%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+ + TF  + +     L ++            DLLFY P S+ ++   P ++E+ +  
Sbjct: 9   LFSSVKTFINIREDTVSALKRL------GINNIRDLLFYLPVSYQNKILSPNLTEVRDGD 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+     + +  +   +  +P KI  ++ TG + L+FF++    + N    G    ++GK
Sbjct: 63  IIQTE-IVVESINLPKKSSQPLKITASNDTGSLLLVFFHKPPPFIFNKLQVGTSHIISGK 121

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++   + + + HP +I +         IE +YSL   LS       I++A+       + 
Sbjct: 122 VQFFDHYLQISHPEFIVNPK---LVKEIEPIYSLTYLLSNKQLYSYIIKAIEIFEEKCKS 178

Query: 189 IEKD--------LLQKKSFPSIAEAFNIIHNPRKA------------------KDFEWTS 222
           IE          +LQ      +         P K                   ++ +  +
Sbjct: 179 IEDKEVKDYLDIILQNLQMLHVFRHCEEACMPPKQSSNVKLINSRLPQPIKGLRNDDLYT 238

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
            A+++LA  EL+A QI+LL +R Q  K  G        I   IL  + F  T  Q+  I+
Sbjct: 239 NAKKQLAAKELIANQISLLNVRTQISKRQGNIYPKAVSIQANILNELGFELTSYQKQVIE 298

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I  D S K  M+R+LQGDVGSGKTLVAL+ M   V  G QA +M P  +LA QHYEF  
Sbjct: 299 EIECDQSDKIEMMRLLQGDVGSGKTLVALLTMVNVVATGFQATLMVPTDLLANQHYEFFV 358

Query: 343 KYTQNTQII 351
           K  +NT I 
Sbjct: 359 KALKNTNIR 367


>gi|13235387|emb|CAC33662.1| RecG protein [Rickettsia rickettsii]
          Length = 367

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 104/369 (28%), Positives = 167/369 (45%), Gaps = 36/369 (9%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           LF+ + TF  + +     L ++            DLLFY P S+ ++   P ++E+ +  
Sbjct: 9   LFSSVKTFINIREDTVSALKRL------GINNIRDLLFYLPVSYQNKILSPNLTEVRDGD 62

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
           I+     + +  +   +  +P KI  ++ TG + L+FF++    + N    G    ++GK
Sbjct: 63  IIQTE-IVVESINLPKKSSQPLKITASNDTGSLLLVFFHKPPPFIFNKLQVGTSHIISGK 121

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
           ++   + + + HP +I +         IE +YSL   LS       I++A+       + 
Sbjct: 122 VQFFDHYLQIAHPEFIVNPKLAKE---IEPIYSLTYLLSNKKLYSYIIKAIEIFEEKCKS 178

Query: 189 IEKD--------LLQKKSFPSIAEAFNIIHNPRKA------------------KDFEWTS 222
           IE          +LQ      +         P K                   ++ +  +
Sbjct: 179 IEDKEVKDYLDIILQNLQMLHVFHHCEEACMPTKQSSNVKSINARLPQPLKGLRNDDLYT 238

Query: 223 PARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIK 282
            A+++LA  EL+A QI+LL +R Q  +  G        I   IL  + F  T  Q+  I+
Sbjct: 239 NAKKQLAAKELIANQISLLNVRTQISRRQGNIYPKAVSIQANILNELGFELTSYQKQVIE 298

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIK 342
           +I  D S K  M+R+LQGDVGSGKTLVAL+ M   V  G QA +MAP  +LA QHYEF  
Sbjct: 299 EIECDQSDKIEMMRLLQGDVGSGKTLVALLTMVNVVATGFQATLMAPTDLLANQHYEFFV 358

Query: 343 KYTQNTQII 351
           K  +NT I 
Sbjct: 359 KALKNTNIR 367


>gi|295094785|emb|CBK83876.1| RecG-like helicase [Coprococcus sp. ART55/1]
          Length = 269

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 96/243 (39%), Positives = 141/243 (58%), Gaps = 8/243 (3%)

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M+ATPIPRTL +   GD+DIS I E PAGR PIK  ++  +     +  +   + +G + 
Sbjct: 1   MSATPIPRTLAIIMYGDLDISVIDELPAGRIPIKNCVVDESYRKTALGFIMKEVLQGHQI 60

Query: 486 YWICPQIEEKKE-SNFRSVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFK 538
           Y +CP +E  +   +  +V E    L +          S+  +HG+M   +K  ++  F 
Sbjct: 61  YIVCPMVEASEVLDDVANVTEYTEELKKSIRDGYGADTSVVCLHGKMKAEEKNRILQDFA 120

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L++TTVIEVGI+  +A+++++ENAE FGLAQLHQLRGRVGRG   S CI +   
Sbjct: 121 DGKISILVSTTVIEVGINNPNATVMMVENAERFGLAQLHQLRGRVGRGNLQSYCIFMSGK 180

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
              K++  RL+VL+ + DGF IA EDLK R  G+  GI+QSG   F +     H  +L  
Sbjct: 181 K-DKDTMERLNVLEKSNDGFYIAGEDLKMRGPGDFFGIRQSGELMFKVGDIYNHADMLRA 239

Query: 659 ARK 661
           A+ 
Sbjct: 240 AQD 242


>gi|255522527|ref|ZP_05389764.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J1-175]
          Length = 244

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 86/232 (37%), Positives = 144/232 (62%), Gaps = 3/232 (1%)

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           K I+T  +    +D VI  ++  + +G + Y ICP IEE ++ + ++ ++ FN L   + 
Sbjct: 2   KEIETYWVKHQMLDRVIGFMEKEIDKGHQVYIICPLIEESEKLDVQNAIDVFNILQNKWG 61

Query: 516 SSI--AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           +     ++HG++   DKE +M  F N     L++TTV+EVG++V +A++++I +A+ FGL
Sbjct: 62  TKYIPGLMHGKLLPADKEQIMRDFNNKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL 121

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           AQLHQLRGRVGRG + S CIL+  P  ++    R+ ++  T DGF+++E DL+ R  G+ 
Sbjct: 122 AQLHQLRGRVGRGADQSYCILIADPK-TEVGKERMMIMSETNDGFVVSERDLELRGPGDF 180

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            G KQSG+P+F +A       +LEIAR+DA H++ ++  L +   + +  LL
Sbjct: 181 FGRKQSGVPEFKVADMVHDYRVLEIARQDAVHMIFEEDMLENKNYEKLVALL 232


>gi|213028844|ref|ZP_03343291.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 282

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 112/270 (41%), Positives = 162/270 (60%), Gaps = 5/270 (1%)

Query: 215 AKDFE-WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
             D E    PA+ RL  +ELLA  +++L +R   ++    P++    +  K+L ++PF P
Sbjct: 1   LADLETGKHPAQRRLILEELLAHNLSMLALRAGAQRYHTQPLSTNNILKDKLLASLPFKP 60

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T +Q   + +I +DM+    M+R++QGDVGSGKTLVA +A   A+  G Q  +MAP  +L
Sbjct: 61  TSAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELL 120

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A+QH    + + +   + V  + G      R+   E IA GQ  +I+GTHA+FQ+ +Q+ 
Sbjct: 121 AEQHANNFRNWFEPLGVEVGWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFN 180

Query: 394 KLILVIVDEQHRFGVQQRLKLT----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            L LVI+DEQHRFGV QRL L     Q+   PH L+MTATPIPRTL +T+  D+D S I 
Sbjct: 181 GLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVID 240

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           E P GR P+ TV IP  R  E+I+R++   
Sbjct: 241 ELPPGRTPVTTVAIPDTRRHEIIDRVRNAC 270


>gi|27262308|gb|AAN87435.1| transcription-repair coupling factor [Heliobacillus mobilis]
          Length = 388

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 83/272 (30%), Positives = 144/272 (52%), Gaps = 15/272 (5%)

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           +I+DE+ RFGV  + K+ Q      VL ++ATPIPRTL ++ +G  D+S I   P  R P
Sbjct: 1   MIIDEEQRFGVAHKEKIKQFKENVDVLTLSATPIPRTLHMSMVGLRDMSIIETPPEDRYP 60

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           ++T ++  N  + + E ++  L+ G + Y++  ++E+             + +       
Sbjct: 61  VQTYVVEYN-PELIREAIRRELNRGGQVYYVRNRVEDLDRIAR-------DLMAMIPDVR 112

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +A+ HG+M +   E +M  F  G   +L+ TT+IE G+D+ + + +I++ A+  GL+QL+
Sbjct: 113 VAVGHGKMREDQLEQIMLDFLEGEYDILVCTTIIETGLDIPNVNTLIVDGADLMGLSQLY 172

Query: 578 QLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGE 632
           QLRGRVGR   ++     Y     L++ +  RL  ++       GF IA  DL+ R  G 
Sbjct: 173 QLRGRVGRSNRLAYAYFTYRKDKVLTEVAEKRLHAIREFTELGSGFKIAMRDLEIRGVGN 232

Query: 633 ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
           +LG +Q G         +L+  LLE A ++ +
Sbjct: 233 LLGPEQHGQM--ASVGFDLYCRLLEEAIQELR 262


>gi|303271977|ref|XP_003055350.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
 gi|226463324|gb|EEH60602.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
          Length = 1468

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 104/253 (41%), Positives = 151/253 (59%), Gaps = 6/253 (2%)

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            +  + +    PH+L MTATPIPRTL +   G++ IS I EKPAGR PI T I+       
Sbjct: 1177 KDGIVEWRQMPHMLTMTATPIPRTLAMCEHGEMAISCIDEKPAGRLPIFTKILMSKDHHI 1236

Query: 471  VIERLKV-VLSEGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTS-SIAIIHGRM 525
              ++  V  +  G + Y I P +EE K       +S  E    L E +   +  I+HG+ 
Sbjct: 1237 AYDKYMVDAVKSGSQCYIILPLVEESKAERMERFKSAEEEHKRLVEKYPEVTFGILHGKQ 1296

Query: 526  SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            S  +K + +  FK+G  ++L+ATTVIEVG+DV +AS+IIIE+A+ FG+AQLHQ+RGRVGR
Sbjct: 1297 SSDEKATALKDFKDGKTQVLVATTVIEVGVDVPNASLIIIEDADRFGVAQLHQMRGRVGR 1356

Query: 586  GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
            G+  SSC LL        +  R+ VL+ + +GF +AE DL+ R  G++ G +QSG    L
Sbjct: 1357 GKTASSCFLLLGDEAGYPAQQRMKVLEQSNNGFKVAESDLRNRGPGDLTGTRQSGHKDTL 1416

Query: 646  -IAQPELHDSLLE 657
             +A+ E   +L+E
Sbjct: 1417 CLARVETDLALVE 1429



 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 122/430 (28%), Positives = 183/430 (42%), Gaps = 37/430 (8%)

Query: 12   PLSTFRGVGKKYS--LFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
            P+   +  G        L K      A  T    +L  +P  + +        E+     
Sbjct: 690  PIDELKNHGASTQMVNVLKK------AGVTTVQQVLRCYPRKYQEYARWRGDMEL--GTS 741

Query: 70   VTITGYISQHSSFQLQKR-----RPYKILLNDGTGEITLLFFYRKTEML-----KNVFFE 119
            V + G +  +       R     +P  + +    G   +  F            + +   
Sbjct: 742  VLVQGTVVSYLKGNAGGRWGGYKQPATLAIETEDGVGGVATFEAPLWAYVPQESERMLVP 801

Query: 120  GRKITVTGKI--KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLP---TGLSVDLFKKI 174
            G    V G    K  K  + +  P             +    Y        L     +K 
Sbjct: 802  GAYACVRGVFSGKNAKQYLTLDSPSLAMDVPPHATVEVYSK-YPKKHDLEPLKWREIQKA 860

Query: 175  IVEAL-SRLPVLPEWI----EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLA 229
             V AL + LP  P  +    E  +L +    S  EA   IH     +  E  + ARER+A
Sbjct: 861  AVAALRANLPADPLTVALGVESTVLPELKLVSHLEAMTHIHR---GESVEMVAAARERIA 917

Query: 230  YDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
            ++ELL  Q  LLL R + +K  G  ++ V  ++  ++   + FS T  QE A+++IL DM
Sbjct: 918  FEELLELQTELLLKRVEAQKSGGEGLSIVSTRLCDELRSVLDFSLTGGQEQAMEEILHDM 977

Query: 289  SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT 348
            +  + MLR+LQGDVG GKT+VA +A+ AAV  G Q   MAP  +LA QH     +     
Sbjct: 978  AGTSPMLRMLQGDVGCGKTVVAALAILAAVGNGHQGAFMAPTEVLATQHERTFAEIFSRL 1037

Query: 349  --QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
                 + ++TG+ P+  R  AL  I  G A I+IGTHAL  D++++  L L +VDEQH+F
Sbjct: 1038 AKPPKIVLLTGSTPKRARDAALADIESGAADIVIGTHALVHDAVKFKSLGLAVVDEQHKF 1097

Query: 407  GVQQRLKLTQ 416
            GV QR  L Q
Sbjct: 1098 GVDQRAMLLQ 1107


>gi|325914694|ref|ZP_08177035.1| RecG-like helicase [Xanthomonas vesicatoria ATCC 35937]
 gi|325539196|gb|EGD10851.1| RecG-like helicase [Xanthomonas vesicatoria ATCC 35937]
          Length = 655

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 150/624 (24%), Positives = 244/624 (39%), Gaps = 59/624 (9%)

Query: 47  YHPSSFID-RHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLND-GTGEITLL 104
           Y P S  D R        +S E    I   +    S   +     K  + D   G+    
Sbjct: 30  YLPESIDDLRTQHSSAPALSTEAFEPIVLRLVSAPSVTNRPFLMVKATVEDRERGQYQAQ 89

Query: 105 FFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSL-P 163
           F       + +   +G  I    K +     + ++    I        +  +   Y   P
Sbjct: 90  FSGDLQAWM-DSLKQGLVICAMAKARWWNETLTVLVKERIEKEW----YGKLRPNYKGRP 144

Query: 164 TGLSVDLFKKIIVEALSR-----LPVLPEWIEK-----DLLQKKSFPS--IAEAFNIIHN 211
            GL+    +++I + L          L E +       +LL++   P   +   F   H 
Sbjct: 145 KGLTGSDLRRLIQQYLEEGIPDACERLVEHLAPLGKIDELLEEVGCPGWNLRSLFLQAHR 204

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P   + +E +  A  RL             L R +      I         +K LR+   
Sbjct: 205 PHTPEYWEHSISALTRL--------DALAGLHRAKAGGPKPISNPFHISTVEKRLRSAGI 256

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
           S T  Q +A+      +++K     +  GDVG+GK+L   +  A   + GG+++ + P  
Sbjct: 257 SLTDDQTNALAVYRAALARKRPARVMSLGDVGTGKSLCIYMVAAGIADQGGRSMCLFPNS 316

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
            LA Q  E  K +  + ++ +     +              + +A I+IGT AL   + +
Sbjct: 317 QLAVQMMEDFKHWAPDLEMSLVTSDSDAS-----------VNLEAPILIGTTALL--TRK 363

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
             K+  V+VDEQHRF  +QR    +     H+   TAT IPRT  L  +G  +  ++ + 
Sbjct: 364 LPKVDAVLVDEQHRFSREQRE--KKVGRHTHLFEFTATCIPRTEALVRIGLYETVELRQT 421

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ-----------IEEKKESNF 500
            A +     + I      ++   L   L  G +   + P+           +E + E+N 
Sbjct: 422 FAPKTIYTHLHIGREGRRDLFNMLLDDLKNGGRVLVVYPRKNLDDVEAVEGMESRMETNP 481

Query: 501 RSVVERFN-SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              VE         F   +A I    +  +K + +D+F +G   +L+ TTV+EVG+++  
Sbjct: 482 MHTVEGALPGWQAKFGDQVASITSDNTTEEKVATLDAFADGRINVLVTTTVVEVGLNLPG 541

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
              I+I +   +GLA LHQLRGRV R      C LL    L      RL     T DGF 
Sbjct: 542 LYRIVIVDPTRYGLATLHQLRGRVARKGGEGHCELLCDDKLKAEQQDRLDFFCATTDGFK 601

Query: 620 IAEEDLKQRKEGEILG---IKQSG 640
           IA  DL+ R  G+ LG    +QSG
Sbjct: 602 IAARDLELRGAGD-LGSGSDRQSG 624


>gi|262401991|ref|ZP_06078556.1| ATP-dependent DNA helicase RecG [Vibrio sp. RC586]
 gi|262351963|gb|EEZ01094.1| ATP-dependent DNA helicase RecG [Vibrio sp. RC586]
          Length = 271

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 112/248 (45%), Gaps = 18/248 (7%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           PL    GVG K +  L K+            DLLF+ P  + DR     I ++       
Sbjct: 9   PLCELSGVGAKVAEKLEKV------GLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAA 62

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           + G +    +    KR+   + ++DG G +TL FF   T  +KN F EG+ +   G+IK+
Sbjct: 63  VQGKVMAVDTL-FGKRKMLTVKISDGNGTLTLRFFNF-TAAMKNNFAEGKFVHAYGEIKR 120

Query: 132 LKNRIIMVHPHYIFHNSQDVN--FPLIEAVYSLPTGLSVDLFKKIIVEALSRLP--VLPE 187
               + ++HP Y F          P +  VY    GL     + +  +AL+ L    + E
Sbjct: 121 GNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQLTLRNLTDQALALLEKSAVQE 180

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAGQIALLLM 243
            +   L  ++   ++A+A  IIH P    D     +   PA+ RL  +ELLA  +++L +
Sbjct: 181 LLPSGLYDQQ--MTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAI 238

Query: 244 RKQFKKEI 251
           R Q ++++
Sbjct: 239 RSQGQQDV 246


>gi|117676155|ref|YP_863731.1| helicase domain-containing protein [Shewanella sp. ANA-3]
 gi|117614979|gb|ABK50432.1| helicase domain protein [Shewanella sp. ANA-3]
          Length = 664

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 149/640 (23%), Positives = 262/640 (40%), Gaps = 75/640 (11%)

Query: 74  GYISQHSSF---QLQKRRPYKIL-LNDGTGEITLLFFYRKTEMLKN------VFFEGRKI 123
           G+I   S     + +KR P+ I+ L D  G     F Y   E LK+      +  +   I
Sbjct: 52  GHIHSVSDIKLGRTKKRSPFIIVELTDQLGFRLKTFVYDTAENLKSLSNGLAMANQHHPI 111

Query: 124 TVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS------VDLFKKIIVE 177
            V G  +    ++I+ +  +I  +        +   Y L  G S      +D   +++ E
Sbjct: 112 YVYGLPEYQNQQLILKNQEFIAPDD----LGRLHVCYELAKGRSKAEPNVIDFLSRLLSE 167

Query: 178 ---ALSRLPVLPEWIEKDLLQKKSF-------PS--IAEAFNIIHNPRKAKDFEWTSPAR 225
                     + E +    +  K         PS  I +    IH P      +      
Sbjct: 168 RDVIKECADKIRELLSATTVSNKRLKQFLGAAPSDNIEQMLQEIHFP------DCVQRGY 221

Query: 226 ERLAYDELLAGQIALLLMRKQFKKE--IGIPINVEGKIAQKILRNIPFSPTKSQESAIKD 283
            R+     LA  +     ++   +     +P++ E +     ++++PF  T+ Q+SA   
Sbjct: 222 ARIRQVSKLAAVLIGAEAKELASQWGVKRVPLHFESEAIDNRIKSLPFQMTEEQKSAAFS 281

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343
           ++  M+       +L GDVG+GK+ V     A+ V+AGG+  IM P   LA+Q +    +
Sbjct: 282 MVTQMTSAVSQHMMLIGDVGTGKSCVIGTCAASVVDAGGRVAIMLPTSNLARQLHREFSE 341

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
           Y             ++      +        Q  ++IGT A+      +    L +VDEQ
Sbjct: 342 YYP-----------DISPTLVIEGEIIEEISQCRMLIGTTAILHKQWPF-TFDLTVVDEQ 389

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           H+F V+QR      A   H+L  TATP+PRT  L   G + + ++      ++    ++ 
Sbjct: 390 HKFSVEQRELF--CADGAHLLESTATPVPRTAALLKHGVLKVYELKHCFVDKRIESRLLE 447

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---NFRSVVERFNSLHEHFTSS--- 517
                D  I  L   L  G+K   +C   +E K     + ++  E +        S+   
Sbjct: 448 HYAGRDLAIRALA-TLQSGQKLLIVCALKDESKCEAFADIQNATETYEKWCRFIHSNRHV 506

Query: 518 ------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                 + + HG +++ +  + +D+   G   +L+ATT++E G+ +   +  I+ N +  
Sbjct: 507 LPDGSGVVLAHGGLTNEENAAAIDALNTGDANVLVATTLVETGLTIKGLTHCIVMNPDRL 566

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           GL QLHQLRGR+ R   +    LL  P +S  S  RL ++     G  +A ED+K R  G
Sbjct: 567 GLVQLHQLRGRLARHGGVGYFDLLLPPEISPKSKDRLELISQISHGVTLAIEDMKLRGFG 626

Query: 632 EIL--GIKQSGM-PKFLIAQPELHDSLLEIARKDAKHILT 668
           ++   G  Q+G+  ++L       D L      DA  ++ 
Sbjct: 627 DLTKSGRSQTGVNQRYLFGYKINLDDL-----NDAIELID 661


>gi|237756331|ref|ZP_04584882.1| transcription-repair-coupling factor [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691501|gb|EEP60558.1| transcription-repair-coupling factor [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 624

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 82/278 (29%), Positives = 146/278 (52%), Gaps = 3/278 (1%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W +  ++     + +A  +  +  ++Q       P+  + ++  K  R  PF  T  Q  
Sbjct: 338 WRNLKKKVKESLKNIAKNLLEIYSKRQNIYRP--PLKTDDELISKFEREFPFVETPDQIK 395

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AIKDI  D S+   M R++ GDVG GKT VA+  +  +V  G QA+++ P  +LA QHY+
Sbjct: 396 AIKDIKSDFSKPKPMERLICGDVGFGKTEVAIRGIFISVINGYQALLLVPTTVLAYQHYK 455

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
            +K+  +   IIVE ++    +      ++    G+  +++ TH +   ++ + KL L++
Sbjct: 456 KLKERLEPYGIIVENLSRLKSKKENDNTIKAFEEGKIDVLVATHKILHTNLSFNKLGLLV 515

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE+HRFGV+ + K+ Q   +   L +TATPIPRTL +   G  DIS +   P GR  IK
Sbjct: 516 IDEEHRFGVKAKEKIRQIRESVDTLYLTATPIPRTLNMALSGLKDISVLNTPPEGRYEIK 575

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           T +   +  + + + ++  +    + +++  +IE  KE
Sbjct: 576 TYVSNFDE-ELIKKAIEFEIDRNGQVFYLHNRIETIKE 612


>gi|213161681|ref|ZP_03347391.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 406

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 98/278 (35%), Positives = 144/278 (51%), Gaps = 17/278 (6%)

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                   +L +TATPIPRTL +   G  D+S I   PA R  +KT +   + +  V E 
Sbjct: 1   KAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSL-VVREA 59

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           +   +  G + Y++   +E     N +   ER   L     + IAI HG+M + + E VM
Sbjct: 60  ILREILRGGQVYYLYNDVE-----NIQKAAERLAELVPE--ARIAIGHGQMRERELERVM 112

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR    +   L
Sbjct: 113 NDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL 172

Query: 595 LYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
           L   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG +QSG  + +    
Sbjct: 173 LTPHPKAMTADAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFS- 231

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
            L+  LLE A    K    ++P L  +  Q   + L +
Sbjct: 232 -LYMELLENAVDALKA--GREPSLEDLTSQQTEVELRM 266


>gi|330902004|gb|EGH33327.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 265

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 117/265 (44%), Gaps = 16/265 (6%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+K+            D+LF+ P  + DR     I  +   +   
Sbjct: 8   SVTALKGVGEAMAEKLAKV------GLETLQDVLFHLPLRYQDRTRIVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLGDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWT----SPARERLAYDELLAGQIALLLM 243
           W+ ++L +      + +A   +H+P    D E        A+ RLA++ELL  Q++   +
Sbjct: 180 WLPEELARDYQLAPLDDAIRYLHHPPADADVEELALGHHWAQHRLAFEELLTHQLSQQRL 239

Query: 244 RKQFKKEIGIPINVEGKIAQKILRN 268
           R+  + +    + V  K+ ++ L+N
Sbjct: 240 RESLRSQRAPALPVAKKLPKQFLQN 264


>gi|219559004|ref|ZP_03538080.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis T17]
          Length = 345

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 82/343 (23%), Positives = 142/343 (41%), Gaps = 37/343 (10%)

Query: 40  RFIDLLFYHPSSFIDRHYRPKISEISE--ERIVTITGYISQHSSFQLQK---RRPYKILL 94
              DLL ++P S+++   R  I +        +TI   I+   SF ++K   R+  +I +
Sbjct: 3   TVDDLLRHYPRSYVEGAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNRKCLRITV 62

Query: 95  NDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFP 154
             G  ++T  FF    + +     +  K+ ++G++   K  + + HP ++  +S D    
Sbjct: 63  GGGRNKVTATFFN--ADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSPDGKNH 120

Query: 155 LIE--------------------------AVYSLPTGLSVDLFKKIIVEALSRLPVLPEW 188
                                         +Y   T +      K + + L  L  + + 
Sbjct: 121 GTRSLKSIADASKAISGELVVEEFERRFFPIYPASTKVQSWDIFKCVRQVLDVLDRVDDP 180

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +  +L  K       EA   I     A+       ARERL +DE +  Q AL+  R    
Sbjct: 181 LPAELRAKHGLIPEDEALRAI---HLAESQSLRERARERLTFDEAVGLQWALVARRHGEL 237

Query: 249 KEIGIPINVEGKI-AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
            E G     +    A ++LR +PF  T  Q   +  +   ++    + R+LQG+VGSGKT
Sbjct: 238 SESGPSAAWKSNGLAAELLRRLPFELTAGQREVLDVLSDGLAANRPLNRLLQGEVGSGKT 297

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350
           +VA++AM   V+AG Q  ++AP  +LA QH   I+       +
Sbjct: 298 IVAVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAM 340


>gi|313895853|ref|ZP_07829407.1| helicase C-terminal domain protein [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975278|gb|EFR40739.1| helicase C-terminal domain protein [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 276

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 101/232 (43%), Positives = 143/232 (61%), Gaps = 4/232 (1%)

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             P VL+MTATPIPRT+ LT  GD+D+S+I   P GR+ I+T +       ++   ++  
Sbjct: 1   MTPDVLVMTATPIPRTMTLTVYGDLDVSRIEHLPPGRRAIRTFLRTDAARAKIYAFVRKE 60

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDS 536
           +  G++AY +CP+IE  +E++  S  E ++ L           ++HGRM   DK++VM  
Sbjct: 61  IESGRQAYVVCPRIEASEENDLPSAEEVYDELSRGVFRGIRCGLLHGRMKAADKDAVMRD 120

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F     KLL++TTVIEVG++V +ASI+++E+AE FGLAQLHQLRGRVGRG   S CIL+ 
Sbjct: 121 FYEDRIKLLVSTTVIEVGVNVPNASILVVEHAERFGLAQLHQLRGRVGRGAYASYCILIA 180

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
               S     RL V++ T DGF +AEEDL+ R  G+  G  Q G+    IA 
Sbjct: 181 GA--SAAQAERLKVIEQTSDGFRLAEEDLRLRGPGQFFGAMQHGLGDLKIAD 230


>gi|238783786|ref|ZP_04627805.1| Transcription-repair-coupling factor [Yersinia bercovieri ATCC
           43970]
 gi|238715337|gb|EEQ07330.1| Transcription-repair-coupling factor [Yersinia bercovieri ATCC
           43970]
          Length = 413

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 96/285 (33%), Positives = 145/285 (50%), Gaps = 17/285 (5%)

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           ++ + ++        +L +TATPIPRTL +   G  D+S I   PA R  +KT +   + 
Sbjct: 1   MRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDS 60

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           +  + E +   +  G + Y++   +E     N     +R   L     + IAI HG+M +
Sbjct: 61  L-VIREAILREILRGGQVYYLYNDVE-----NIEKATQRLAELVPE--ARIAIGHGQMRE 112

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            D E VM+ F +    +L+ TT+IE GID+  A+ IIIE A+HFGLAQLHQLRGRVGR  
Sbjct: 113 RDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSH 172

Query: 588 EISSCILLYHPP--LSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEILGIKQSGMP 642
             +   LL   P  ++ ++  RL  + + ED   GF +A  DL+ R  GE+LG  QSG  
Sbjct: 173 HQAYAYLLTPNPKAMTADAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSGQL 232

Query: 643 KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYL 687
             +     L+  LLE A    K    ++P L  +      I + +
Sbjct: 233 TTIGFS--LYMELLENAVDALKE--GREPSLEDLTSHQTEIEMRM 273


>gi|255070749|ref|XP_002507456.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
 gi|226522731|gb|ACO68714.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
          Length = 1473

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 115/427 (26%), Positives = 192/427 (44%), Gaps = 36/427 (8%)

Query: 12   PLSTFR--GVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERI 69
            P+ T +  GV  +    L K      A        L  +P  + +       + +     
Sbjct: 693  PVDTLKDHGVSAQTVNKLRK------AGVLTVEQTLRCYPRKYQEFARFH--AGMQAGTA 744

Query: 70   VTITGYISQHSSFQLQKR------RPYKILLNDGTG---EITLLFFYRKTEMLKNVFFEG 120
            V +TG +  +      ++          I  +DG G   +  L  +    +  +     G
Sbjct: 745  VLVTGRVVSYLKAPYSRKGWGKTPSTLLIECDDGEGNTEQFELKLWEYVQKETEAGLTPG 804

Query: 121  RKITVTGKI--KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLF---KKII 175
              + V G +  +  +  + +         + D    ++   Y     ++ D +   +   
Sbjct: 805  APVAVRGALSTRTGRGHLTLDKAQLAAGVNPDAEVDVVT-TYPKKHDIAPDRWHEVQTAA 863

Query: 176  VEAL-SRLPVLPEWI----EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAY 230
            V+AL   +P  P  +    E  +L +    S  +A   IH P      +    ARERLA+
Sbjct: 864  VKALKDHIPADPMTVSLGTESSVLPELQLISHVDAMQFIHAP---ATVDQVVAARERLAF 920

Query: 231  DELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
            +EL+  Q++LL  R + ++  G  ++ V   +  ++   + FS T+ QE+A+++ILQDMS
Sbjct: 921  EELVLLQVSLLQERNRAQRSGGEGVSIVSTSMCDELRGVLDFSLTRGQETALEEILQDMS 980

Query: 290  QKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNT- 348
                MLR+LQGDVG GKT+VA + + AAV  G Q   MAP  +LA QH   ++       
Sbjct: 981  GTTPMLRLLQGDVGCGKTIVAALGLLAAVGNGHQGAFMAPTEVLATQHATTLENVFGRLE 1040

Query: 349  -QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG 407
                V ++TG+ P+  R  AL  I  G+  I++GTH+L  + + +  L L +VDEQHRFG
Sbjct: 1041 NPPRVVLLTGSTPKKERDAALRLIESGEGQIVVGTHSLISEDVVFKSLGLAVVDEQHRFG 1100

Query: 408  VQQRLKL 414
            V+QR  L
Sbjct: 1101 VEQRAAL 1107



 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 101/250 (40%), Positives = 144/250 (57%), Gaps = 6/250 (2%)

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT-VIIPINRIDEVI 472
            + +   APHVL M+ATPIPRTL +   G++ +S I EKPAGR PI T ++I  + ID+  
Sbjct: 1185 MVEWRHAPHVLAMSATPIPRTLAMCKHGEMALSSIDEKPAGRLPIYTKLLIGPDGIDDAH 1244

Query: 473  ERLKVVLSEGKKAYWICPQIEEKKES---NFRSVVERFNSLHEHFTS-SIAIIHGRMSDI 528
              +   +  G + Y I P +          F+S       L E F      I+HG+M+  
Sbjct: 1245 RAMVEEVQTGGQCYVITPLVNASTADSFERFKSAEVEHKRLVEKFPQIKFGILHGQMNSE 1304

Query: 529  DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            +K + + +F +G  ++L+AT+V+EVG+DV +AS+IIIE+A+  G++ LHQLRGRVGRG  
Sbjct: 1305 EKAAALKAFADGHTQVLVATSVVEVGVDVPNASVIIIEDADRHGVSTLHQLRGRVGRGSR 1364

Query: 589  ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI-A 647
             S C LL        S  RL VL+ + +GF IAE DL+ R  G++LG +QSG    L  A
Sbjct: 1365 QSKCFLLVGDEAGYPSQQRLRVLERSNNGFHIAESDLRMRGAGDLLGTRQSGSQVSLFHA 1424

Query: 648  QPELHDSLLE 657
                   LLE
Sbjct: 1425 SVATDLFLLE 1434


>gi|213691255|ref|YP_002321841.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213522716|gb|ACJ51463.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 944

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 137/399 (34%), Positives = 194/399 (48%), Gaps = 81/399 (20%)

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           EALSR   +P+ + + + + K+    AEAF  IH+P     F+      E L Y+E    
Sbjct: 289 EALSR--SIPDVLPESVRKAKNLMHRAEAFLAIHDPASTARFKEAI---ETLRYEEAFVS 343

Query: 237 QIALLLMRKQFKKEIGIPINVE-----------------------------------GKI 261
           Q +LL  R+   K    P  +                                      +
Sbjct: 344 QTSLLKARQHAHKSSAHPCPLNEALETARASVGEAAAEPSAQPGASERGAATNLPDLPNL 403

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
             + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM  AV AG
Sbjct: 404 RDRFIASLPFTLTAGQSQVVDDIAADLERDWPMQRLLQGEVGSGKTVVALAAMLQAVGAG 463

Query: 322 GQAVIMAPIGILAQQHYEFIKKY-----------------------------------TQ 346
            QAV++AP  +LA+QHYE I K                                      
Sbjct: 464 YQAVLVAPTQVLAEQHYETISKMVSGLALAQPGAKETDAAADVEGAMGASSASTVSSSKV 523

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           + +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++DEQHRF
Sbjct: 524 SAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQHRF 583

Query: 407 GVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           GV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+TV++
Sbjct: 584 GVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTVVV 643

Query: 464 ---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                  +  +   ++  +  G++AY +CP+I+   E N
Sbjct: 644 NEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 682



 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 100/191 (52%), Gaps = 2/191 (1%)

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS I+
Sbjct: 751 DRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFVGGETPILVSTTVIEVGVDVKQASCIV 810

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+ D
Sbjct: 811 IFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQAD 870

Query: 625 LKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+ R  G++LG  QSG      + +      ++  AR  A+ +L  DP+L     Q    
Sbjct: 871 LEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAEQLLAADPELAD-EVQLAGA 929

Query: 684 LLYLYQYNEAF 694
           +L   + NE F
Sbjct: 930 VLDFTRGNETF 940



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 40/142 (28%), Gaps = 14/142 (9%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P    +      I E +  + +     I       +  R
Sbjct: 17  RRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMAFAAVIRDMRVVPMNAR 76

Query: 88  RPYK--ILLNDGT---------GEITLLFFYRKTEMLKNV---FFEGRKITVTGKIKKLK 133
           R Y+    ++D               L FF  +   +  V      G  + V+G   +  
Sbjct: 77  RGYRLEAAVDDADFARSRRVPGSTARLTFFSYRKSYVDWVSMRLRAGTSVVVSGMPSEYM 136

Query: 134 NRIIMVHPHYIFHNSQDVNFPL 155
            ++   HP  +           
Sbjct: 137 GQLQFTHPEILTVAPGSAGTGA 158


>gi|320457319|dbj|BAJ67940.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 940

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 137/399 (34%), Positives = 194/399 (48%), Gaps = 81/399 (20%)

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           EALSR   +P+ + + + + K+    AEAF  IH+P     F+      E L Y+E    
Sbjct: 285 EALSR--SIPDVLPESVRKAKNLMHRAEAFLAIHDPASTARFKEAI---ETLRYEEAFVS 339

Query: 237 QIALLLMRKQFKKEIGIPINVE-----------------------------------GKI 261
           Q +LL  R+   K    P  +                                      +
Sbjct: 340 QTSLLKARQHAHKSSAHPCPLNEALETARASVGEAAAEPSAQPGASERGAATNLPDLPNL 399

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
             + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM  AV AG
Sbjct: 400 RDRFIASLPFTLTAGQSQVVDDIAADLERDWPMQRLLQGEVGSGKTVVALAAMLQAVGAG 459

Query: 322 GQAVIMAPIGILAQQHYEFIKKY-----------------------------------TQ 346
            QAV++AP  +LA+QHYE I K                                      
Sbjct: 460 YQAVLVAPTQVLAEQHYETISKMVSGLALAQPGAKETDAAADVEGAMGASSASTVSSSKV 519

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRF 406
           + +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++DEQHRF
Sbjct: 520 SAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQHRF 579

Query: 407 GVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           GV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+TV++
Sbjct: 580 GVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTVVV 639

Query: 464 ---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                  +  +   ++  +  G++AY +CP+I+   E N
Sbjct: 640 NEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 678



 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 100/191 (52%), Gaps = 2/191 (1%)

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS I+
Sbjct: 747 DRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFVGGETPILVSTTVIEVGVDVKQASCIV 806

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+ D
Sbjct: 807 IFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQAD 866

Query: 625 LKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+ R  G++LG  QSG      + +      ++  AR  A+ +L  DP+L     Q    
Sbjct: 867 LEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAEQLLAADPELAD-EVQLAGA 925

Query: 684 LLYLYQYNEAF 694
           +L   + NE F
Sbjct: 926 VLDFTRGNETF 936



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 40/142 (28%), Gaps = 14/142 (9%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P    +      I E +  + +     I       +  R
Sbjct: 13  RRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMAFAAVIRDMRVVPMNAR 72

Query: 88  RPYK--ILLNDGT---------GEITLLFFYRKTEMLKNV---FFEGRKITVTGKIKKLK 133
           R Y+    ++D               L FF  +   +  V      G  + V+G   +  
Sbjct: 73  RGYRLEAAVDDADFARSRRVPGSTARLTFFSYRKSYVDWVSMRLRAGTSVVVSGMPSEYM 132

Query: 134 NRIIMVHPHYIFHNSQDVNFPL 155
            ++   HP  +           
Sbjct: 133 GQLQFTHPEILTVAPGSAGTGA 154


>gi|239622522|ref|ZP_04665553.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|239514519|gb|EEQ54386.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
          Length = 943

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 136/402 (33%), Positives = 193/402 (48%), Gaps = 84/402 (20%)

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           EALS+   +P+ + + + + K+    AEAF  IH+P     F+      E L Y+E    
Sbjct: 285 EALSQ--SIPDVLPESVRKAKNLMHRAEAFLAIHDPASTARFKEAI---ETLRYEEAFVS 339

Query: 237 QIALLLMRKQFKKEIGIPINVE-------------------------------------- 258
           Q +LL  R+   K    P  +                                       
Sbjct: 340 QTSLLKSRQHAHKSSAHPCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPDLPNL 399

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             +  + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM  AV
Sbjct: 400 PNLRDRFIASLPFTLTAGQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAMLQAV 459

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNT------------------------------ 348
            AG QAV++AP  +LA+QHYE I K                                   
Sbjct: 460 GAGYQAVLVAPTQVLAEQHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGASTVSS 519

Query: 349 -----QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++DEQ
Sbjct: 520 SKVTAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQ 579

Query: 404 HRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           HRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T
Sbjct: 580 HRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRT 639

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           V++       +  +   ++  +  G++AY +CP+I+   E N
Sbjct: 640 VVVNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 681



 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 99/191 (51%), Gaps = 2/191 (1%)

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS I+
Sbjct: 750 DRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASCIV 809

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+ D
Sbjct: 810 IFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQAD 869

Query: 625 LKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+ R  G++LG  QSG      + +      ++  AR  A  +L  DP+L     Q    
Sbjct: 870 LEFRGAGDVLGDTQSGGKSSLKLLRVVKDADMIADARTRAGQLLAADPELAG-EVQLAGA 928

Query: 684 LLYLYQYNEAF 694
           +L   + NE F
Sbjct: 929 VLDFTRGNETF 939



 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 14/131 (10%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P    +      I E +  + +     I       +  R
Sbjct: 13  RRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMAFAAVIRDMRVVPMNAR 72

Query: 88  RPYK--ILLNDGT---------GEITLLFFYRKTEMLKNV---FFEGRKITVTGKIKKLK 133
           R Y+    ++D               L FF  +   +  V      G  + V+G   +  
Sbjct: 73  RGYRLEATVDDADFARSRRVPGSTARLTFFSYRKSYVDWVSVRLRAGTSVVVSGMPGEYM 132

Query: 134 NRIIMVHPHYI 144
            ++   HP  +
Sbjct: 133 GQLQFTHPEIL 143


>gi|23335795|ref|ZP_00121027.1| COG1200: RecG-like helicase [Bifidobacterium longum DJO10A]
          Length = 947

 Score =  197 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 136/402 (33%), Positives = 193/402 (48%), Gaps = 84/402 (20%)

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           EALS+   +P+ + + + + K+    AEAF  IH+P     F+      E L Y+E    
Sbjct: 289 EALSQ--SIPDVLPESVRKAKNLMHRAEAFLAIHDPASTARFKEAI---ETLRYEEAFVS 343

Query: 237 QIALLLMRKQFKKEIGIPINVE-------------------------------------- 258
           Q +LL  R+   K    P  +                                       
Sbjct: 344 QTSLLKSRQHAHKSSAHPCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPDLPNL 403

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             +  + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM  AV
Sbjct: 404 PNLRDRFIASLPFTLTAGQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAMLQAV 463

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNT------------------------------ 348
            AG QAV++AP  +LA+QHYE I K                                   
Sbjct: 464 GAGYQAVLVAPTQVLAEQHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGASTVSS 523

Query: 349 -----QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++DEQ
Sbjct: 524 SKVTAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQ 583

Query: 404 HRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           HRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T
Sbjct: 584 HRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRT 643

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           V++       +  +   ++  +  G++AY +CP+I+   E N
Sbjct: 644 VVVNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 685



 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 99/191 (51%), Gaps = 2/191 (1%)

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS I+
Sbjct: 754 DRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASCIV 813

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+ D
Sbjct: 814 IFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQAD 873

Query: 625 LKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+ R  G++LG  QSG      + +      ++  AR  A  +L  DP+L     Q    
Sbjct: 874 LEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAGQLLAADPELAG-EVQLAGA 932

Query: 684 LLYLYQYNEAF 694
           +L   + NE F
Sbjct: 933 VLDFTRGNETF 943



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 14/131 (10%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P    +      I E +  + +     I       +  R
Sbjct: 17  RRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMAFAAVIRDMRVVPMNAR 76

Query: 88  RPYK--ILLNDGT---------GEITLLFFYRKTEMLKNV---FFEGRKITVTGKIKKLK 133
           R Y+    ++D               L FF  +   +  V      G  + V+G   +  
Sbjct: 77  RGYRLEATVDDADFARSRRVPGSTARLTFFSYRKSYVDWVSVRLRAGTSVVVSGMPGEYM 136

Query: 134 NRIIMVHPHYI 144
            ++   HP  +
Sbjct: 137 GQLQFTHPEIL 147


>gi|189439950|ref|YP_001955031.1| RecG-like helicase [Bifidobacterium longum DJO10A]
 gi|189428385|gb|ACD98533.1| RecG-like helicase [Bifidobacterium longum DJO10A]
          Length = 943

 Score =  197 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 136/402 (33%), Positives = 193/402 (48%), Gaps = 84/402 (20%)

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           EALS+   +P+ + + + + K+    AEAF  IH+P     F+      E L Y+E    
Sbjct: 285 EALSQ--SIPDVLPESVRKAKNLMHRAEAFLAIHDPASTARFKEAI---ETLRYEEAFVS 339

Query: 237 QIALLLMRKQFKKEIGIPINVE-------------------------------------- 258
           Q +LL  R+   K    P  +                                       
Sbjct: 340 QTSLLKSRQHAHKSSAHPCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPDLPNL 399

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             +  + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM  AV
Sbjct: 400 PNLRDRFIASLPFTLTAGQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAMLQAV 459

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNT------------------------------ 348
            AG QAV++AP  +LA+QHYE I K                                   
Sbjct: 460 GAGYQAVLVAPTQVLAEQHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGASTVSS 519

Query: 349 -----QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++DEQ
Sbjct: 520 SKVTAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQ 579

Query: 404 HRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           HRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T
Sbjct: 580 HRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRT 639

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           V++       +  +   ++  +  G++AY +CP+I+   E N
Sbjct: 640 VVVNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 681



 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 99/191 (51%), Gaps = 2/191 (1%)

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS I+
Sbjct: 750 DRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASCIV 809

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+ D
Sbjct: 810 IFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQAD 869

Query: 625 LKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+ R  G++LG  QSG      + +      ++  AR  A  +L  DP+L     Q    
Sbjct: 870 LEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAGQLLAADPELAG-EVQLAGA 928

Query: 684 LLYLYQYNEAF 694
           +L   + NE F
Sbjct: 929 VLDFTRGNETF 939



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 14/131 (10%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P    +      I E +  + +     I       +  R
Sbjct: 13  RRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMAFAAVIRDMRVVPMNAR 72

Query: 88  RPYK--ILLNDGT---------GEITLLFFYRKTEMLKNV---FFEGRKITVTGKIKKLK 133
           R Y+    ++D               L FF  +   +  V      G  + V+G   +  
Sbjct: 73  RGYRLEATVDDADFARSRRVPGSTARLTFFSYRKSYVDWVSVRLRAGTSVVVSGMPGEYM 132

Query: 134 NRIIMVHPHYI 144
            ++   HP  +
Sbjct: 133 GQLQFTHPEIL 143


>gi|317481970|ref|ZP_07940995.1| ATP-dependent DNA helicase RecG [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916537|gb|EFV37934.1| ATP-dependent DNA helicase RecG [Bifidobacterium sp. 12_1_47BFAA]
          Length = 943

 Score =  197 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 136/402 (33%), Positives = 193/402 (48%), Gaps = 84/402 (20%)

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           EALS+   +P+ + + + + K+    AEAF  IH+P     F+      E L Y+E    
Sbjct: 285 EALSQ--SIPDVLPESVRKAKNLMHRAEAFLAIHDPASTARFKEAI---ETLRYEEAFVS 339

Query: 237 QIALLLMRKQFKKEIGIPINVE-------------------------------------- 258
           Q +LL  R+   K    P  +                                       
Sbjct: 340 QTSLLKSRQHAHKSSAHPCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPNLPNL 399

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             +  + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM  AV
Sbjct: 400 PNLRDRFIASLPFTLTAGQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAMLQAV 459

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNT------------------------------ 348
            AG QAV++AP  +LA+QHYE I K                                   
Sbjct: 460 GAGYQAVLVAPTQVLAEQHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGASTVSS 519

Query: 349 -----QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++DEQ
Sbjct: 520 SKVTAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQ 579

Query: 404 HRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           HRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T
Sbjct: 580 HRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRT 639

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           V++       +  +   ++  +  G++AY +CP+I+   E N
Sbjct: 640 VVVNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 681



 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 100/191 (52%), Gaps = 2/191 (1%)

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS I+
Sbjct: 750 DRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASCIV 809

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+ D
Sbjct: 810 IFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQAD 869

Query: 625 LKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+ R  G++LG  QSG      + +      ++  AR  A+ +L  DP+L     Q    
Sbjct: 870 LEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAEQLLAADPELAG-EVQLAGA 928

Query: 684 LLYLYQYNEAF 694
           +L   + NE F
Sbjct: 929 VLDFTRGNETF 939



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 40/142 (28%), Gaps = 14/142 (9%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P    +      I E +  + +     I       +  R
Sbjct: 13  RRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMAFAAVIRDMRVVPMNAR 72

Query: 88  RPYK--ILLNDGT---------GEITLLFFYRKTEMLKNV---FFEGRKITVTGKIKKLK 133
           R Y+    ++D               L FF  +   +  V      G  + V+G   +  
Sbjct: 73  RGYRLEATVDDADFARSRHVPGSTARLTFFSYRKSYVDWVSMRLRAGTSVVVSGMPSEYM 132

Query: 134 NRIIMVHPHYIFHNSQDVNFPL 155
            ++   HP  +           
Sbjct: 133 GQLQFTHPEILTVAPGSAGTGA 154


>gi|297182584|gb|ADI18743.1| recg-like helicase [uncultured gamma proteobacterium HF4000_36I10]
          Length = 254

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 110/259 (42%), Gaps = 20/259 (7%)

Query: 6   LNPLFA-PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEI 64
           +  L A  +   +GVG +    L K             DLLF+ P  + DR     I  +
Sbjct: 1   MTDLQAISIDQLKGVGPRLREKLHK------YGVFNAQDLLFHLPLRYQDRTRVTPIGAL 54

Query: 65  SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKIT 124
                  I G + Q +     KRR     + DGTG +TL FF+      K   F G +I 
Sbjct: 55  QLGVDAVIEGEV-QMADIAFGKRRSLICKVQDGTGLVTLRFFHFSAAQ-KKQLFAGARIR 112

Query: 125 VTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL 182
             G+ ++    + + HP Y   + Q   V    +  VY    G+   +++K+  +AL+ L
Sbjct: 113 CYGEPRRGGAGLELYHPEYQLLDEQQPAVLEDRLTPVYPTTEGIGQTVWRKLCRQALTFL 172

Query: 183 PVLP--EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF----EWTSPARERLAYDELLAG 236
              P  E I +  L +     +++A   +H P          E   PA+ RLA++ELLA 
Sbjct: 173 DKHPVTELISQHELARF---PLSDALRYLHQPPPKARLSLISEGLHPAQRRLAFEELLAH 229

Query: 237 QIALLLMRKQFKKEIGIPI 255
            +A+L  R+Q +    +P+
Sbjct: 230 NLAMLKTREQAQARGAVPL 248


>gi|322690475|ref|YP_004220045.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|320455331|dbj|BAJ65953.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 943

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 136/402 (33%), Positives = 193/402 (48%), Gaps = 84/402 (20%)

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           EALS+   +P+ + + + + K+    AEAF  IH+P     F+      E L Y+E    
Sbjct: 285 EALSQ--SIPDVLPESVRKAKNLMHRAEAFLAIHDPASTARFKEAI---ETLRYEEAFVS 339

Query: 237 QIALLLMRKQFKKEIGIPINVE-------------------------------------- 258
           Q +LL  R+   K    P  +                                       
Sbjct: 340 QTSLLKSRQHAHKSSAHPCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPDLPNL 399

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             +  + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM  AV
Sbjct: 400 PNLRDRFIASLPFTLTAGQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAMLQAV 459

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNT------------------------------ 348
            AG QAV++AP  +LA+QHYE I K                                   
Sbjct: 460 GAGYQAVLVAPTQVLAEQHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGASTVSS 519

Query: 349 -----QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++DEQ
Sbjct: 520 SKVTAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQ 579

Query: 404 HRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           HRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T
Sbjct: 580 HRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRT 639

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           V++       +  +   ++  +  G++AY +CP+I+   E N
Sbjct: 640 VVVNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 681



 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 99/191 (51%), Gaps = 2/191 (1%)

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS I+
Sbjct: 750 DRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASCIV 809

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+ D
Sbjct: 810 IFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQAD 869

Query: 625 LKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+ R  G++LG  QSG      + +      ++  AR  A  +L  DP+L     Q    
Sbjct: 870 LEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAGQLLAADPELAG-EVQLAGA 928

Query: 684 LLYLYQYNEAF 694
           +L   + NE F
Sbjct: 929 VLDFTRGNETF 939



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 14/131 (10%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P    +      I E +  + +     I       +  R
Sbjct: 13  RRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMAFAAVIRDMRVVPMNAR 72

Query: 88  RPYK--ILLNDGT---------GEITLLFFYRKTEMLKNV---FFEGRKITVTGKIKKLK 133
           R Y+    ++D               L FF  +   +  V      G  + V+G   +  
Sbjct: 73  RGYRLEATVDDADFARSRRVPGSTARLTFFSYRKSYVDWVSVRLRAGTSVVVSGMPGEYM 132

Query: 134 NRIIMVHPHYI 144
            ++   HP  +
Sbjct: 133 GQLQFTHPEIL 143


>gi|23464930|ref|NP_695533.1| ATP-dependent DNA helicase [Bifidobacterium longum NCC2705]
 gi|23325524|gb|AAN24169.1| ATP-dependent DNA helicase [Bifidobacterium longum NCC2705]
          Length = 947

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 136/402 (33%), Positives = 193/402 (48%), Gaps = 84/402 (20%)

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           EALS+   +P+ + + + + K+    AEAF  IH+P     F+      E L Y+E    
Sbjct: 289 EALSQ--SIPDVLPESVRKAKNLMHRAEAFLAIHDPASTARFKEAI---ETLRYEEAFVS 343

Query: 237 QIALLLMRKQFKKEIGIPINVE-------------------------------------- 258
           Q +LL  R+   K    P  +                                       
Sbjct: 344 QTSLLKSRQHAHKSSAHPCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPDLPNL 403

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             +  + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM  AV
Sbjct: 404 PNLRDRFIASLPFTLTAGQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAMLQAV 463

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNT------------------------------ 348
            AG QAV++AP  +LA+QHYE I K                                   
Sbjct: 464 GAGYQAVLVAPTQVLAEQHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGASTVSS 523

Query: 349 -----QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++DEQ
Sbjct: 524 SKVTAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQ 583

Query: 404 HRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           HRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T
Sbjct: 584 HRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRT 643

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           V++       +  +   ++  +  G++AY +CP+I+   E N
Sbjct: 644 VVVNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 685



 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 99/191 (51%), Gaps = 2/191 (1%)

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS I+
Sbjct: 754 DRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASCIV 813

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+ D
Sbjct: 814 IFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQAD 873

Query: 625 LKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+ R  G++LG  QSG      + +      ++  AR  A  +L  DP+L     Q    
Sbjct: 874 LEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAGQLLAADPELAG-EVQLAGA 932

Query: 684 LLYLYQYNEAF 694
           +L   + NE F
Sbjct: 933 VLDFTRGNETF 943



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 14/131 (10%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P    +      I E +  + +     I       +  R
Sbjct: 17  RRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMAFAAVIRDMRVVPMNAR 76

Query: 88  RPYK--ILLNDGT---------GEITLLFFYRKTEMLKNV---FFEGRKITVTGKIKKLK 133
           R Y+    ++D               L FF  +   +  V      G  + V+G   +  
Sbjct: 77  RGYRLEATVDDADFARSRRVPGSTARLTFFSYRKSYVDWVSVRLRAGTSVVVSGMPGEYM 136

Query: 134 NRIIMVHPHYI 144
            ++   HP  +
Sbjct: 137 GQLQFTHPEIL 147


>gi|312133355|ref|YP_004000694.1| recg [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772578|gb|ADQ02066.1| RecG [Bifidobacterium longum subsp. longum BBMN68]
          Length = 943

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 136/402 (33%), Positives = 193/402 (48%), Gaps = 84/402 (20%)

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           EALS+   +P+ + + + + K+    AEAF  IH+P     F+      E L Y+E    
Sbjct: 285 EALSQ--SIPDVLPESVRKAKNLMHRAEAFLAIHDPASTARFKEAI---ETLRYEEAFVS 339

Query: 237 QIALLLMRKQFKKEIGIPINVE-------------------------------------- 258
           Q +LL  R+   K    P  +                                       
Sbjct: 340 QTSLLKSRQHAHKSSAHPCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPDLPNL 399

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             +  + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM  AV
Sbjct: 400 PNLRDRFIASLPFTLTAGQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAMLQAV 459

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNT------------------------------ 348
            AG QAV++AP  +LA+QHYE I K                                   
Sbjct: 460 GAGYQAVLVAPTQVLAEQHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGASTVSS 519

Query: 349 -----QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++DEQ
Sbjct: 520 SKVTAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQ 579

Query: 404 HRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           HRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T
Sbjct: 580 HRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRT 639

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           V++       +  +   ++  +  G++AY +CP+I+   E N
Sbjct: 640 VVVNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 681



 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 99/191 (51%), Gaps = 2/191 (1%)

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS I+
Sbjct: 750 DRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASCIV 809

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+ D
Sbjct: 810 IFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQAD 869

Query: 625 LKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+ R  G++LG  QSG      + +      ++  AR  A  +L  DP+L     Q    
Sbjct: 870 LEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAGQLLAADPELAG-EVQLAGA 928

Query: 684 LLYLYQYNEAF 694
           +L   + NE F
Sbjct: 929 VLDFTRGNETF 939



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 14/131 (10%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P    +      I E +  + +     I       +  R
Sbjct: 13  RRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMAFAAVIRDMRVVPMNAR 72

Query: 88  RPYK--ILLNDGT---------GEITLLFFYRKTEMLKNV---FFEGRKITVTGKIKKLK 133
           R Y+    ++D               L FF  +   +  V      G  + V+G   +  
Sbjct: 73  RGYRLEATVDDADFARSRRVPGSTARLTFFSYRKSYVDWVSVRLRAGTSVVVSGMPGEYM 132

Query: 134 NRIIMVHPHYI 144
            ++   HP  +
Sbjct: 133 GQLQFTHPEIL 143


>gi|322688454|ref|YP_004208188.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           157F]
 gi|320459790|dbj|BAJ70410.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 943

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 136/402 (33%), Positives = 193/402 (48%), Gaps = 84/402 (20%)

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           EALS+   +P+ + + + + K+    AEAF  IH+P     F+      E L Y+E    
Sbjct: 285 EALSQ--SIPDVLPESVRKAKNLMHRAEAFLAIHDPASTARFKEAI---ETLRYEEAFVS 339

Query: 237 QIALLLMRKQFKKEIGIPINVE-------------------------------------- 258
           Q +LL  R+   K    P  +                                       
Sbjct: 340 QTSLLKSRQHAHKSSAHPCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPDLPNL 399

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             +  + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM  AV
Sbjct: 400 PNLRDRFIASLPFTLTAGQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAMLQAV 459

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNT------------------------------ 348
            AG QAV++AP  +LA+QHYE I K                                   
Sbjct: 460 GAGYQAVLVAPTQVLAEQHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGASTVSS 519

Query: 349 -----QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++DEQ
Sbjct: 520 SKVTAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQ 579

Query: 404 HRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           HRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T
Sbjct: 580 HRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRT 639

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           V++       +  +   ++  +  G++AY +CP+I+   E N
Sbjct: 640 VVVNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEEN 681



 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 100/191 (52%), Gaps = 2/191 (1%)

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS I+
Sbjct: 750 DRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASCIV 809

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+ D
Sbjct: 810 IFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQAD 869

Query: 625 LKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+ R  G++LG  QSG      + +      ++  AR  A+ +L  DP+L     Q    
Sbjct: 870 LEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAEQLLAADPELAG-EVQLAGA 928

Query: 684 LLYLYQYNEAF 694
           +L   + NE F
Sbjct: 929 VLDFTRGNETF 939



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 14/131 (10%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P    +      I E +  + +     I       +  R
Sbjct: 13  RRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMAFAAVIRDMRVVPMNAR 72

Query: 88  RPYK--ILLNDGT---------GEITLLFFYRKTEMLKNV---FFEGRKITVTGKIKKLK 133
           R Y+    ++D               L FF  +   +  V      G  + V+G   +  
Sbjct: 73  RGYRLEATVDDADFARSRRVPGSTARLTFFSYRKSYVDWVSVRLRAGTSVVVSGMPGEYM 132

Query: 134 NRIIMVHPHYI 144
            ++   HP  +
Sbjct: 133 GQLQFTHPEIL 143


>gi|227545780|ref|ZP_03975829.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227213896|gb|EEI81735.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 947

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 136/402 (33%), Positives = 193/402 (48%), Gaps = 84/402 (20%)

Query: 177 EALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG 236
           EALS+   +P+ + + + + K+    AEAF  IH+P     F+      E L Y+E    
Sbjct: 289 EALSQ--SIPDVLPESVRKAKNLMHRAEAFLAIHDPASTARFKEAI---ETLRYEEAFVS 343

Query: 237 QIALLLMRKQFKKEIGIPINVE-------------------------------------- 258
           Q +LL  R+   K    P  +                                       
Sbjct: 344 QTSLLKSRQHAHKSSAHPCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPDLPNL 403

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
             +  + + ++PF+ T  Q   + DI  D+ +   M R+LQG+VGSGKT+VAL AM  AV
Sbjct: 404 PNLRDRFIASLPFTLTAGQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAMLQAV 463

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNT------------------------------ 348
            AG QAV++AP  +LA+QHYE I K                                   
Sbjct: 464 GAGYQAVLVAPTQVLAEQHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGASTVSS 523

Query: 349 -----QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQ 403
                +I V ++TG M  A RRKAL   A G+  II+ THA F  + Q   L LV++DEQ
Sbjct: 524 SKVTAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQ 583

Query: 404 HRFGVQQRLKL---TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           HRFGV+QR  L   T   T PH+L+MTATPIPRT  +T  GD+DIS +TE P GRKPI+T
Sbjct: 584 HRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRT 643

Query: 461 VII---PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           V++       +  +   ++  +  G++AY +CP+I+   E N
Sbjct: 644 VVVNEADAATMGRMFAHIRARVDTGERAYIVCPRIDADDEEN 685



 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 100/191 (52%), Gaps = 2/191 (1%)

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +R   L +      A + GR  D  K  VM  F  G   +L++TTVIEVG+DV  AS I+
Sbjct: 754 DRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFAGGETPILVSTTVIEVGVDVKQASCIV 813

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           I +A+ +GL+QLHQLRGRVGRG   S   L+        +  RL V+ ++ DG  IA+ D
Sbjct: 814 IFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQAD 873

Query: 625 LKQRKEGEILGIKQSGMP-KFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           L+ R  G++LG  QSG      + +      ++  AR  A+ +L  DP+L     Q    
Sbjct: 874 LEFRGAGDVLGDAQSGGKSSLKLLRVVKDADMIADARTRAEQLLAADPELAG-EVQLAGA 932

Query: 684 LLYLYQYNEAF 694
           +L   + NE F
Sbjct: 933 VLDFTRGNETF 943



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 14/131 (10%)

Query: 28  SKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKR 87
            ++    +       D L Y+P    +      I E +  + +     I       +  R
Sbjct: 17  RRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMAFAAVIRDMRVVPMNAR 76

Query: 88  RPYK--ILLNDGT---------GEITLLFFYRKTEMLKNV---FFEGRKITVTGKIKKLK 133
           R Y+    ++D               L FF  +   +  V      G  + V+G   +  
Sbjct: 77  RGYRLEATVDDADFARSRRVPGSTARLTFFSYRKSYVDWVSVRLRAGTSVVVSGMPGEYM 136

Query: 134 NRIIMVHPHYI 144
            ++   HP  +
Sbjct: 137 GQLQFTHPEIL 147


>gi|289810050|ref|ZP_06540679.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 197

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 103/192 (53%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           +  Q    + PF  T  Q  AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE
Sbjct: 2   EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE 61

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q  ++ P  +LAQQHY+  +    N  + +E+++       + + L   A G+  I+
Sbjct: 62  NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDIL 121

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           IGTH L Q  ++   L L+IVDE+HRFGV+ + ++        +L +TATPIPRTL +  
Sbjct: 122 IGTHKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAM 181

Query: 440 LGDIDISKITEK 451
            G  D+S I   
Sbjct: 182 SGMRDLSIIATP 193


>gi|219559003|ref|ZP_03538079.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis T17]
          Length = 318

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 116/300 (38%), Positives = 174/300 (58%), Gaps = 19/300 (6%)

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            L +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E
Sbjct: 1   NLGMVVVDEQHRFGVEQRDQLRAKAPAGITPHLLVMTATPIPRTVALTVYGDLETSTLRE 60

Query: 451 KPAGRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR---SV 503
            P GR+PI T +I +      +D    R+    + G++AY + P+I+E  +++ +     
Sbjct: 61  LPLGRQPIATNVIFVKDKPAWLDRAWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGVRP 120

Query: 504 VERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                 L     S       +A++HGR+S  DK++ M +F+ G   +L+ TTVIEVG+DV
Sbjct: 121 SATAEGLFSRLRSAELAELRLALMHGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDV 180

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            +A+++++ +A+ FG++QLHQLRGR+GRGE  S C+L    P    +  RL  +  T DG
Sbjct: 181 PNATVMLVMDADRFGISQLHQLRGRIGRGEHPSVCLLASWVPPDTPAGQRLRAVAGTMDG 240

Query: 618 FLIAEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQ--DPDLT 674
           F +A+ DLK+RKEG++LG  QSG      +     H+  +  AR           DP L 
Sbjct: 241 FALADLDLKERKEGDVLGRNQSGKAITLRLLSLAEHEEYIVAARDFCIEAYKNPTDPALA 300


>gi|91070277|gb|ABE11195.1| ATP-dependent DNA helicase recG [uncultured Prochlorococcus marinus
           clone HF10-88D1]
          Length = 216

 Score =  196 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 85/204 (41%), Positives = 126/204 (61%), Gaps = 5/204 (2%)

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +AY I P IE+ ++ N  S  + F  L E   F   + ++HG++S  +K  V++SF    
Sbjct: 2   QAYVILPLIEDSEKMNLSSAKKIFKHLSEEVFFNKKVGLLHGKLSSQEKNEVINSFLKNK 61

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L++TTVIEVGIDV +A+I+II N+E FGL+QLHQLRGRVGRG   S C L+      
Sbjct: 62  INILVSTTVIEVGIDVPNATIMIIYNSERFGLSQLHQLRGRVGRGSTKSFCYLVTSDKNG 121

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
             +     VL+ + DGF IAE+DL+ R  G+ILG +QSG+P F++     +  L++ AR+
Sbjct: 122 LENKRLC-VLQKSNDGFYIAEKDLELRGPGQILGYRQSGLPDFVLDNLPNNKFLIDKARE 180

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
           +A  I++ DPDL       +R +L
Sbjct: 181 EAIKIVSNDPDL--KENIVLRNIL 202


>gi|256752284|ref|ZP_05493147.1| nucleic acid binding OB-fold tRNA/helicase-type [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748852|gb|EEU61893.1| nucleic acid binding OB-fold tRNA/helicase-type [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 237

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 109/243 (44%), Gaps = 13/243 (5%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL   +   +GVG K +  L K+            DLLFY P  + +R    KI ++   
Sbjct: 2   PLNLDIQYVKGVGPKRAKLLKKL------GINTVEDLLFYFPKDYENRSDILKIEDLKVG 55

Query: 68  RIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              T  GYI+      +  K    K+ + DGTG + L+++ +    +KN F  G +  + 
Sbjct: 56  EKQTFRGYIAGSPREIKTSKVIITKVPVKDGTGVVELVWYNQ--PYIKNNFKIGEEYIIN 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVL 185
           GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL   +  +
Sbjct: 114 GKLQFKYGQLIVENPVLEKSEDFKLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEV 173

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+AL LM++
Sbjct: 174 EEFFDEEFLSEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMALFLMKR 230

Query: 246 QFK 248
             K
Sbjct: 231 SVK 233


>gi|255019510|ref|ZP_05291603.1| ATP-dependent DNA helicase RecG [Acidithiobacillus caldus ATCC
           51756]
 gi|254971042|gb|EET28511.1| ATP-dependent DNA helicase RecG [Acidithiobacillus caldus ATCC
           51756]
          Length = 739

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 109/491 (22%), Positives = 205/491 (41%), Gaps = 38/491 (7%)

Query: 49  PSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLND----GTGEITLL 104
           P  + DR +      +       + G I Q  S    + R  K++L D    G+ +    
Sbjct: 9   PLRYEDRRFPQPARHVDPGTTALLLGEIVQVRS----QSRFLKVVLRDLCDLGSAQFQAT 64

Query: 105 FFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPT 164
           FF+ +     ++   G      GK+   +  + +  P  +          +I  +Y    
Sbjct: 65  FFHYR-RWHTDLLTPGAAFAFLGKVGSFQGTVDLQQPAIL----DRTEIGMILPIYRRRG 119

Query: 165 GLSVDLFKKIIVEALS-----RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFE 219
            L     +  I+  L+      L  +     ++ L +     I +A   IH+P   +D  
Sbjct: 120 KLGTADIRAEILGVLAGASDADLASITSPWVREALAQHGTLPIPQAVRTIHDP---EDPR 176

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
             + A+E LA  E+L    A L +R+  ++  G+ ++V      +    +PF+ +  Q++
Sbjct: 177 VLARAQETLARMEVLERVEATLRLREARQQTPGVQVHVSADEMARFAAELPFALSPGQQA 236

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIMAPIGILAQ 335
           A++ + + ++       +L G V SGKT +  IA  A V    E   + +I+AP  IL Q
Sbjct: 237 ALESVREKLASPYPAKILLMGGVASGKTAICHIAARATVYGAREGRNKVLIVAPTQILCQ 296

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           Q +     Y     +   ++ G      ++KAL      +A +  GTH LF   + + ++
Sbjct: 297 QLFSTFSAYF--PAVRAHLVVG---AKGKKKALP-----EADVYFGTHGLFNRGLDWSRV 346

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
             VI DE+HRFG   ++K        + + M+ATPIPR+L L   GD+D+ +I  +P  R
Sbjct: 347 GTVIFDEEHRFGA--QVKFGTVPMEANRIFMSATPIPRSLSLYLFGDMDLVRIAGRPHDR 404

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           + + T ++  +   E +  ++  L+ G+KA  +   I  ++E         +        
Sbjct: 405 R-VVTRVLTRDEGREALAAVRDTLAAGRKAIVVYGAIRREEEPTAVDWERAYFLASFFPG 463

Query: 516 SSIAIIHGRMS 526
             +  + G   
Sbjct: 464 DRVLPLDGVTD 474



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 4/199 (2%)

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
           TV     R  +  + L   +  G   Y   P + E        + +       HF   + 
Sbjct: 540 TVDAKGRRKAKAWDVLVDEIRAGF--YESRPLVRESLYRAGSDLEKAVGVWERHFPGQVE 597

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           ++HGRM+   K + +++F +G   L++AT+++EVGIDV     +++ NA+ FG A L QL
Sbjct: 598 VVHGRMNAAQKAAAIEAFASGAKPLIVATSIVEVGIDVKGVDCLVLANADRFGTASLVQL 657

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           RGRVGR  E   C+L+  P  + + Y RL       D   +AE D ++R  G++ G  QS
Sbjct: 658 RGRVGRSGEAGLCLLVC-PSDTGSDYQRLQAFAEETDDLRLAEMDFRERGWGQVRGKAQS 716

Query: 640 GMPKFLIAQPELHDSLLEI 658
           G  + +      H  LLE 
Sbjct: 717 G-SETVFFDLRKHGRLLEE 734


>gi|307264814|ref|ZP_07546376.1| nucleic acid binding OB-fold tRNA/helicase-type [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306920072|gb|EFN50284.1| nucleic acid binding OB-fold tRNA/helicase-type [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 237

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 109/243 (44%), Gaps = 13/243 (5%)

Query: 8   PLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEE 67
           PL   +   +GVG K +  L K+            DLLFY P  + +R    KI ++   
Sbjct: 2   PLNLDIQYVKGVGPKRAKLLKKL------GINTVEDLLFYFPKDYENRSDILKIEDLKVG 55

Query: 68  RIVTITGYIS-QHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
              T  GYI+      +  K    K+ + DGTG + L+++ +    +KN F  G +  + 
Sbjct: 56  EKQTFRGYIAGSPREIKTSKVIITKVPVKDGTGAVELVWYNQ--PYIKNNFKIGEEYIIN 113

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEAL-SRLPVL 185
           GK++    ++I+ +P         +N   I  +Y L  GL+ +  +KI+  AL   +  +
Sbjct: 114 GKLQFKYGQLIVENPVLEKSEDLKLNTGRIVPIYGLTEGLTQNAIRKIMFNALHDYVQEV 173

Query: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRK 245
            E+ +++ L +K    I  A   I+ P+     E     + R  Y EL   Q+AL LM++
Sbjct: 174 EEFFDEEFLSEKGLMDIKNALININFPQNEAYLEQA---KYRFKYQELFLLQMALFLMKR 230

Query: 246 QFK 248
             K
Sbjct: 231 SVK 233


>gi|256751659|ref|ZP_05492534.1| transcription factor CarD [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749468|gb|EEU62497.1| transcription factor CarD [Thermoanaerobacter ethanolicus CCSD1]
          Length = 765

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 136/319 (42%), Gaps = 27/319 (8%)

Query: 108 RKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDV----------NFPLIE 157
           +  E +   F       + G+ K+ K  + + +   I   ++                 E
Sbjct: 459 KGFEYVDAKFAVISDGEIFGQTKRRKRTVKIKNADKIKSFTELEIGSYVVHVNYGIGKYE 518

Query: 158 AVYSLP-TGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAK 216
            +  +   G+  D   KII      L V  E +  DL+QK   P+         NP K  
Sbjct: 519 GIEKIKVDGIVRDYL-KIIYAGGDTLFVPVEQL--DLVQKYVGPT--------DNPPKLN 567

Query: 217 DF---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
                EW    R+     E LA  +  L  ++Q     G   + +    ++     P+  
Sbjct: 568 KLGGSEWLRAKRKAKKAVEDLAKDLIQLYAKRQ--MVKGHAFSPDTPWQKEFEEQFPYEE 625

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T+ Q   IK+I +DM +   M R+L GDVG GKT VAL A   AV  G Q   + P  IL
Sbjct: 626 TEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVAFLCPTTIL 685

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           A QHY    +  +   + +E+++       + K ++ +A G   II+GTH L Q+ I++ 
Sbjct: 686 AYQHYTNFIERFKEFPVKIEMLSRFRTPKEQSKIIKELAEGNIDIIVGTHRLLQNDIKFK 745

Query: 394 KLILVIVDEQHRFGVQQRL 412
            L L+I+DE+ RFGV  + 
Sbjct: 746 DLGLLIIDEEQRFGVVHKE 764



 Score = 37.3 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 64/169 (37%), Gaps = 9/169 (5%)

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI---IP 464
             +R  +   A +P                T      I +I E     +P+  ++   + 
Sbjct: 596 YAKRQMVKGHAFSPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDMEKDRPMDRLLCGDVG 655

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
             + +  +      +++GK+  ++CP        ++ + +ERF      F   I ++   
Sbjct: 656 YGKTEVALRAAFKAVADGKQVAFLCPTTI-LAYQHYTNFIERFKE----FPVKIEMLSRF 710

Query: 525 MSDIDKESVMDSFKNGTCKLLIATT-VIEVGIDVVDASIIIIENAEHFG 572
            +  ++  ++     G   +++ T  +++  I   D  ++II+  + FG
Sbjct: 711 RTPKEQSKIIKELAEGNIDIIVGTHRLLQNDIKFKDLGLLIIDEEQRFG 759


>gi|256751660|ref|ZP_05492535.1| TRCF domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749469|gb|EEU62498.1| TRCF domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 405

 Score =  193 bits (491), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 78/257 (30%), Positives = 132/257 (51%), Gaps = 19/257 (7%)

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +      VL ++ATPIPRTL ++ +G  D+S +   P  R P++T ++  N  + + + 
Sbjct: 7   KKLKENIDVLTLSATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNE-ELIKDA 65

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDIDKES 532
           +   +  G + Y++  ++         + +E+  S  +       +A+ HG+M +   E 
Sbjct: 66  ILREIGRGGQVYFVYNRV---------NGIEKMASFVKDLVPGCRVAVAHGQMEESQLEK 116

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM  F NG   +L++TT+IE G+D+ + + II+ +A+  GL+QL+QLRGRVGR   ++  
Sbjct: 117 VMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGLSQLYQLRGRVGRSNRLAYA 176

Query: 593 ILLYHPP--LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
              Y     LS+ +  RL  +K       GF IA  DL+ R  G +LG +Q G    +  
Sbjct: 177 YFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMRDLEIRGAGNLLGAEQHGHIDAIGY 236

Query: 648 QPELHDSLLEIARKDAK 664
              L   LLE A ++ K
Sbjct: 237 DLYL--KLLEEAIRNLK 251


>gi|294638413|ref|ZP_06716647.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda ATCC 23685]
 gi|291088471|gb|EFE21032.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda ATCC 23685]
          Length = 202

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 16/214 (7%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M+   L+ +  PL+T  GVG   +  L+KI            DLL + P  + D+ +   
Sbjct: 1   MKGKLLDAI--PLTTLHGVGASQADKLAKI------GLVTIEDLLLHLPLRYEDQTHLYA 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           IS++      T++G + + +     +R+     ++DG+G +TL FF     M KN   +G
Sbjct: 53  ISDLLPGIPATVSGEVLR-TEVSFGRRKMMTCQISDGSGILTLRFFNFTVAM-KNNLAQG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           +++   G++K+      ++HP Y      ++      +  +YS   GL     +K+I +A
Sbjct: 111 KQVIAYGEVKRGSRGPEIIHPEYKIKVAGAEVKLQETLTPIYSTTEGLRQTSLRKLIEQA 170

Query: 179 LSRLP--VLPEWIEKDLLQKKSFPSIAEAFNIIH 210
           L  L    + E +    +     P +A A   +H
Sbjct: 171 LELLDTCAINELLPDQFI--HGLPPLATALRTLH 202


>gi|255018656|ref|ZP_05290782.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL F2-515]
          Length = 190

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 76/188 (40%), Positives = 123/188 (65%), Gaps = 3/188 (1%)

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI--AIIHGRMSDIDKESVMDSFK 538
           +G + Y ICP IEE ++ + ++ ++ FN L   + +     ++HG++   DKE +M  F 
Sbjct: 2   KGHQVYIICPLIEESEKLDVQNAIDVFNILQNKWGTKYIPGLMHGKLLPADKEQIMRDFN 61

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +     L++TTV+EVG++V +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+  P
Sbjct: 62  DKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLRGRVGRGADQSYCILIADP 121

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             ++    R+ ++  T DGF+++E DL+ R  G+  G KQSG+P+F +A       +LEI
Sbjct: 122 K-TEVGKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQSGVPEFKVADMVHDYRVLEI 180

Query: 659 ARKDAKHI 666
           AR+DA H+
Sbjct: 181 ARQDAVHM 188


>gi|289571171|ref|ZP_06451398.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T17]
 gi|289544925|gb|EFD48573.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T17]
          Length = 315

 Score =  192 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 115/297 (38%), Positives = 173/297 (58%), Gaps = 19/297 (6%)

Query: 397 LVIVDEQHRFGVQQRLKLTQKAT---APHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
           +V+VDEQHRFGV+QR +L  KA     PH+L+MTATPIPRT+ LT  GD++ S + E P 
Sbjct: 1   MVVVDEQHRFGVEQRDQLRAKAPAGITPHLLVMTATPIPRTVALTVYGDLETSTLRELPL 60

Query: 454 GRKPIKTVIIPINR----IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR---SVVER 506
           GR+PI T +I +      +D    R+    + G++AY + P+I+E  +++ +        
Sbjct: 61  GRQPIATNVIFVKDKPAWLDRAWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGVRPSAT 120

Query: 507 FNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
              L     S       +A++HGR+S  DK++ M +F+ G   +L+ TTVIEVG+DV +A
Sbjct: 121 AEGLFSRLRSAELAELRLALMHGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNA 180

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           +++++ +A+ FG++QLHQLRGR+GRGE  S C+L    P    +  RL  +  T DGF +
Sbjct: 181 TVMLVMDADRFGISQLHQLRGRIGRGEHPSVCLLASWVPPDTPAGQRLRAVAGTMDGFAL 240

Query: 621 AEEDLKQRKEGEILGIKQSG-MPKFLIAQPELHDSLLEIARKDAKHILTQ--DPDLT 674
           A+ DLK+RKEG++LG  QSG      +     H+  +  AR           DP L 
Sbjct: 241 ADLDLKERKEGDVLGRNQSGKAITLRLLSLAEHEEYIVAARDFCIEAYKNPTDPALA 297


>gi|259500990|ref|ZP_05743892.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners DSM 13335]
 gi|302190561|ref|ZP_07266815.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus iners AB-1]
 gi|309803755|ref|ZP_07697841.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 11V1-d]
 gi|309804668|ref|ZP_07698733.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 09V1-c]
 gi|309806978|ref|ZP_07700960.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 03V1-b]
 gi|309808565|ref|ZP_07702461.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 01V1-a]
 gi|309809614|ref|ZP_07703471.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           2503V10-D]
 gi|312871555|ref|ZP_07731648.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           3008A-a]
 gi|312872588|ref|ZP_07732656.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2062A-h1]
 gi|312874281|ref|ZP_07734313.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2052A-d]
 gi|312874733|ref|ZP_07734752.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2053A-b]
 gi|315653950|ref|ZP_07906866.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
 gi|325912398|ref|ZP_08174793.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           143-D]
 gi|325913097|ref|ZP_08175467.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           60-B]
 gi|329920540|ref|ZP_08277272.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           1401G]
 gi|259167684|gb|EEW52179.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners DSM 13335]
 gi|308164164|gb|EFO66425.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 11V1-d]
 gi|308166060|gb|EFO68278.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 09V1-c]
 gi|308166598|gb|EFO68795.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 03V1-b]
 gi|308168193|gb|EFO70315.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 01V1-a]
 gi|308170095|gb|EFO72131.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           2503V10-D]
 gi|311089478|gb|EFQ47903.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2053A-b]
 gi|311090154|gb|EFQ48566.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2052A-d]
 gi|311091950|gb|EFQ50326.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092950|gb|EFQ51301.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           3008A-a]
 gi|315488646|gb|EFU78292.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
 gi|325475740|gb|EGC78911.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           143-D]
 gi|325477518|gb|EGC80660.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           60-B]
 gi|328936216|gb|EGG32669.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           1401G]
          Length = 487

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 98/452 (21%), Positives = 172/452 (38%), Gaps = 70/452 (15%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           ++   F   T  QE  I  +L           I Q   G+GKT    + +   ++    G
Sbjct: 16  IKRAGFEEATPIQEKTIPLVLSGKDV------IGQAQTGTGKTAAFGLPILQTLDKKQEG 69

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E + +  ++    V+++ G      + ++L+++     +I++G
Sbjct: 70  IQALIIEPTRELAIQTQEELFRLGRDENAHVQVVYGGADIRRQIRSLKQV----PNILVG 125

Query: 382 THALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D ++           +IL   DE    G  Q +           +L  A+   +
Sbjct: 126 TPGRLLDHLKRRTINLSHLKHVILDEADEMLDMGFIQDI---------ESILTFASNDHQ 176

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I +I EK     P    I        +I++  V L E +K   +C  I+
Sbjct: 177 TLLFSATMPKPILQIGEKFM-HDPQIVQIKSKELTANLIDQYFVRLKENEKFDILCRLID 235

Query: 494 EKKES---NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +       F     R + L   F +     A IHG ++   + SV+  FK G   +L+A
Sbjct: 236 VQDPELSVVFGRTKRRVDELTRGFQARGYDAAGIHGDLTQTKRMSVLKRFKQGKLDILVA 295

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+   S +   +      + +H++ GR GR  +    I    P         
Sbjct: 296 TDVAARGLDISGVSHVYNYDIPQDPDSYVHRI-GRTGRAGKNGMSITFVTP--------- 345

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
                  E G++   E L           ++   P    +  E  D  L IA K  + +L
Sbjct: 346 ------NEIGYMKTIERL----------TRKKMTPLRPPSDKEAFDGQLSIANKKIQELL 389

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
             D DLT    ++ ++L    + N A   + A
Sbjct: 390 --DSDLTKYTKEAEKLL----ENNSALDLVAA 415


>gi|207092341|ref|ZP_03240128.1| DNA recombinase (recG) [Helicobacter pylori HPKX_438_AG0C1]
          Length = 357

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 113/358 (31%), Positives = 177/358 (49%), Gaps = 22/358 (6%)

Query: 308 LVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +V L +M  A     + ++MAP  ILA+Q Y    K+       VE++ G   +      
Sbjct: 1   MVILASMVLAYPN--KTLLMAPTSILAKQLYNEALKFL-PPYFEVELLLGGSYKKRSNHL 57

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKAT----APHV 423
            E I     H++IGT AL  D     +  LVI DEQHRFG +QR +L + A+     PH 
Sbjct: 58  FETI----THVVIGTQALLFDKRDLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHS 113

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           L  +ATPIPRTL L     +  + I E P   K I+T+++       V+E++   +++  
Sbjct: 114 LQFSATPIPRTLALAKSAFVKTTMIREIPY-PKEIETLVLHKRDFKIVMEKISEEIAKNH 172

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +   + P + E ++  + S+ E  +   + F   +    G+  +  KE V++ F+  +  
Sbjct: 173 QVIVVYPLVNESEKIPYLSLSEGASFWQKRF-KKVYTTSGQDKN--KEEVIEEFRE-SGS 228

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+ATT+IEVGI +   S+++I   E  GLA LHQLRGRV R      C L      ++ 
Sbjct: 229 ILLATTLIEVGISLPRLSVMVILAPERLGLATLHQLRGRVSRNGLKGYCFLCTIQEENER 288

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL-GIKQSGMPKFLIAQPELHDSLLEIAR 660
                  L    DGF IAE DL+ RK G++L G +QSG   F        ++++   +
Sbjct: 289 LEKFADEL----DGFKIAELDLEYRKSGDLLHGGEQSGN-SFEYIDLAKDENIIAEVK 341


>gi|224112054|ref|XP_002316069.1| predicted protein [Populus trichocarpa]
 gi|222865109|gb|EEF02240.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 82/396 (20%), Positives = 153/396 (38%), Gaps = 45/396 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q       LQ          +     GSGKTL  LI     ++        G   
Sbjct: 170 SPTPIQAQTWPIALQSRD------IVAIAKTGSGKTLGYLIPAFILLQQRRNNAQNGPTV 223

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  + + K+ +++++    + G  P+  + K LER     A I++ T  
Sbjct: 224 LVLAPTRELATQIQDEVMKFGRSSRVSCTCLYGGAPKIPQLKELER----GADIVVATPG 279

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRT 434
              D ++  +        L+L   D     G + +++    +       L+ TAT     
Sbjct: 280 RLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPQRQTLMFTATWPKEV 339

Query: 435 L-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +L     ++I  +    A +   + V ++P    D  +E++      G KA   
Sbjct: 340 RKIASDLLVHPVQVNIGSVDVLSANKSITQYVEVVPQMEKDRRLEQILRTQERGSKAIIF 399

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C        S  R   +   S+  +F +  A IHG  S  +++  ++ F++G   +L+AT
Sbjct: 400 C--------STKRLCDQLARSIGRNFGA--AAIHGDKSQGERDWALNQFRSGKSPILVAT 449

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D  I+I  +        +H++ GR GR          +     K +   +
Sbjct: 450 DVAARGLDIKDIRIVINYDFPSGIEDYVHRI-GRTGRAGATGVSYTFFSEQDWKYAADLV 508

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF 644
            +L+       +   ++  R  G   G  + G+ +F
Sbjct: 509 KLLEGANQHVPVEVREMALRG-GPSFGKDRGGLNRF 543


>gi|254445656|ref|ZP_05059132.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198259964|gb|EDY84272.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 426

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 83/405 (20%), Positives = 151/405 (37%), Gaps = 42/405 (10%)

Query: 238 IALLLMRKQFKKEIGIPINVEG--KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRM 294
           I  L  R   +    +P +  G  +   K L  + F  PT  QE AI  +L+        
Sbjct: 13  ICWLASRWGDQHIRWMPFSGLGLSEPINKALSELGFEKPTPIQEQAIPIVLEGRD----- 67

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
             I     G+GKT    + +   +  G   Q +I+ P   LA Q  E +  + +N  I +
Sbjct: 68  -LIGSAQTGTGKTAAFGLPILQRIVPGKPFQCLILEPTRELAAQVEEALTVFAKNLGIKI 126

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQH 404
            +I G +    + K +E    G A II+ T     D +        Q   L+L  VD   
Sbjct: 127 GLIYGGVKYGGQLKMME----GGAEIIVATPGRLLDHLGQGNLSLKQMDYLVLDEVDRML 182

Query: 405 RFGV---QQRLKLTQKATAPHVLLMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIK 459
             G     +R+     +     LL TAT     +TL    L +  + +I +  +  + + 
Sbjct: 183 DMGFLPDVKRIVQNYCSAERQTLLFTATMPAAIKTLTGWVLKNPAVVEIGKNRSAAETVS 242

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
               P+    +    L+++     ++  I  +         +   +      E     +A
Sbjct: 243 HAFYPVVERQKYKLLLELLERTHYESVLIFTRT--------KFNADMITRRLERLDHKVA 294

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +H   S  ++ + +  FK+G  ++L+AT +   G+D+   + +I  +        +H++
Sbjct: 295 ALHSDRSQSERTAALKGFKDGRYEVLVATDIAARGLDIAGVTHVINYDVPLHAEDYVHRI 354

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVL-----KNTEDGFL 619
            GR GR  +      L      KN+      +     +   DGF 
Sbjct: 355 -GRTGRASKEGDAFTLLTEDEVKNAAAIEHFIGKKVERKKLDGFE 398


>gi|298291343|ref|YP_003693282.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296927854|gb|ADH88663.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 499

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 130/364 (35%), Gaps = 34/364 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  +L       R   +     G+GKT    + M   +E G       + +
Sbjct: 23  EPTPIQAQAIPHVLA------RRDVLGLAQTGTGKTAAFTLPMLTMLEQGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY +N ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVEENFTKYGKNHKLNVALLIGGVSFGDQDAKLLR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--R 433
             D ++  +L+L      ++DE  R      +   ++           L  +AT  P  +
Sbjct: 133 LLDHVERGRLLLSGIEILVIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFSATMPPEIQ 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            LV   L +    + +   +    I   ++   + D         L              
Sbjct: 193 RLVAQFLSNPVQVEASRPSSTAANITQFLVACGKEDFAKRETLRELINSAD-----NLQN 247

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N +S V   +   +    ++  +HG M    +   +D F+ G   LL+A+ V   
Sbjct: 248 GIIFCNRKSEVAVVHKSLKRHGFNVVALHGDMDQRSRMQALDQFRTGEANLLVASDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   S +   +  H     +H++ GR GR     +   L  P  +K+      ++  
Sbjct: 308 GLDIPAVSHVFNYDTPHHAEDYVHRI-GRTGRAGRSGAAFTLVTPADTKSLAAIEKLIGR 366

Query: 614 TEDG 617
           + D 
Sbjct: 367 SIDW 370


>gi|119505184|ref|ZP_01627259.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080]
 gi|119458875|gb|EAW39975.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080]
          Length = 465

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 100/451 (22%), Positives = 178/451 (39%), Gaps = 61/451 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T+ Q  ++  IL+      R   I+Q   GSGKT    I +   +     G QAV+M P 
Sbjct: 28  TQVQAQSLPPILK------RQDVIIQAKTGSGKTAAFAIGLLHHLNPRFFGVQAVVMCPT 81

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA+Q  E  ++   + + + V ++ G  P   +R +L    H  AHI++GT    QD 
Sbjct: 82  RELAEQVGEATRQLASRMSNVKVVMLCGGKPFGAQRDSL----HHGAHIVVGTPGRIQDH 137

Query: 390 IQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +Q   L L  V     DE  R        +  + T             +TL+L++    D
Sbjct: 138 LQRGTLELKGVTTFVLDEADRMLDMGFADVMAEIT------AKLPADRQTLLLSATFPDD 191

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-------E 497
           I KI+          TV   +   + V+E++   + + ++   +    E  +        
Sbjct: 192 IKKISRSIQKNPIQITVDAEVVHDEVVLEQVFFEVQKHERNVALLALFEHYRPANAMVFC 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   E    L EH   + AI HG +   +++ V+  F N +C +L+A+ V   G+D+
Sbjct: 252 NTKKQCAEVARFLREHDIEAAAI-HGDLEQRERDQVLLQFANNSCPVLVASDVAARGLDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
               +++           +H++ GR GR  E      +  PP +         LK     
Sbjct: 311 PSLEMVVNFELPRDADTYVHRI-GRTGRAGESGKAFSIVTPPEAPRMRVIEDYLKTHCVC 369

Query: 618 FLIAEEDL---------------------KQRKEGEILG--IKQSGMPKFLIAQPELHD- 653
            ++A  D                      K R  G+ILG     +G+    I + ++ D 
Sbjct: 370 DVLASLDRDPNYQLQGAMVTLQLDAGRKQKIR-PGDILGALTGDAGLSGGQIGKIKILDN 428

Query: 654 -SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            S + I R   +  +    +   V+G++I++
Sbjct: 429 GSYVAIERSALRQAMNYLAE-GKVKGRAIKV 458


>gi|215426300|ref|ZP_03424219.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis T92]
 gi|289749551|ref|ZP_06508929.1| transcription-repair coupling factor [Mycobacterium tuberculosis
           T92]
 gi|289690138|gb|EFD57567.1| transcription-repair coupling factor [Mycobacterium tuberculosis
           T92]
          Length = 364

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 90/295 (30%), Positives = 150/295 (50%), Gaps = 15/295 (5%)

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           ++VDE+ RFGV+ +  +    T   VL M+ATPIPRTL ++  G  ++S I   P  R P
Sbjct: 1   MVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYP 60

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS 517
           + T + P +   ++   L+  L    +A+++  ++     +       R   L     + 
Sbjct: 61  VLTYVGPHDD-KQIAAALRRELLRDGQAFYVHNRVSSIDAA-----AARVRELVPE--AR 112

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + + HG+M +   E+ +  F N    +L+ TT++E G+D+ +A+ +I+E A+ FGL+QLH
Sbjct: 113 VVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLH 172

Query: 578 QLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGE 632
           QLRGRVGR  E      LY P  PL++ +Y RL+ +    +   G  +A +DL+ R  G 
Sbjct: 173 QLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGN 232

Query: 633 ILGIKQSGMPKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +LGI+QSG    +     +      LE  R   +         T+   + +RI L
Sbjct: 233 VLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDL 287


>gi|114153757|sp|Q9LYJ9|RH46_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 46
 gi|332004672|gb|AED92055.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana]
          Length = 645

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 154/394 (39%), Gaps = 44/394 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +P+  Q  +    +Q+         +     GSGKTL  LI     ++        G   
Sbjct: 183 APSPIQAQSWPIAMQNRD------IVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTI 236

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q      K+ ++++I    + G  P+  + K +ER       I++ T  
Sbjct: 237 LVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIER----GVDIVVATPG 292

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRT 434
              D ++  +        L+L   D     G + +++    +  T    L+ TAT     
Sbjct: 293 RLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEV 352

Query: 435 L-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +L +   ++I  + E  A +   +T+ ++        +E++      G K    
Sbjct: 353 RKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIF 412

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C        S  R   +   +L   F +  A IHG  S  +++ V++ F++G   +L+AT
Sbjct: 413 C--------STKRMCDQLARNLTRTFGA--AAIHGDKSQAERDDVLNQFRSGRTPVLVAT 462

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV D  +++  +  +     +H++ GR GR          +    +K++   +
Sbjct: 463 DVAARGLDVKDIRVVVNYDFPNGVEDYVHRI-GRTGRAGATGLAYTFFGDQDAKHASDLI 521

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
            +L+           ++  R  G +   ++ G P
Sbjct: 522 KILEGANQKVPPQVREMATRGGGGMNKFRRWGTP 555


>gi|7573310|emb|CAB87628.1| DRH1 DEAD box protein-like [Arabidopsis thaliana]
          Length = 713

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 154/394 (39%), Gaps = 44/394 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +P+  Q  +    +Q+         +     GSGKTL  LI     ++        G   
Sbjct: 251 APSPIQAQSWPIAMQNRD------IVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTI 304

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q      K+ ++++I    + G  P+  + K +ER       I++ T  
Sbjct: 305 LVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIER----GVDIVVATPG 360

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRT 434
              D ++  +        L+L   D     G + +++    +  T    L+ TAT     
Sbjct: 361 RLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEV 420

Query: 435 L-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +L +   ++I  + E  A +   +T+ ++        +E++      G K    
Sbjct: 421 RKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIF 480

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C        S  R   +   +L   F +  A IHG  S  +++ V++ F++G   +L+AT
Sbjct: 481 C--------STKRMCDQLARNLTRTFGA--AAIHGDKSQAERDDVLNQFRSGRTPVLVAT 530

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV D  +++  +  +     +H++ GR GR          +    +K++   +
Sbjct: 531 DVAARGLDVKDIRVVVNYDFPNGVEDYVHRI-GRTGRAGATGLAYTFFGDQDAKHASDLI 589

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
            +L+           ++  R  G +   ++ G P
Sbjct: 590 KILEGANQKVPPQVREMATRGGGGMNKFRRWGTP 623


>gi|79513425|ref|NP_196965.2| ATP binding / ATP-dependent helicase/ helicase/ nucleic acid
           binding / protein binding [Arabidopsis thaliana]
 gi|332004671|gb|AED92054.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana]
          Length = 712

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 154/394 (39%), Gaps = 44/394 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +P+  Q  +    +Q+         +     GSGKTL  LI     ++        G   
Sbjct: 251 APSPIQAQSWPIAMQNRD------IVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTI 304

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q      K+ ++++I    + G  P+  + K +ER       I++ T  
Sbjct: 305 LVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIER----GVDIVVATPG 360

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRT 434
              D ++  +        L+L   D     G + +++    +  T    L+ TAT     
Sbjct: 361 RLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEV 420

Query: 435 L-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +L +   ++I  + E  A +   +T+ ++        +E++      G K    
Sbjct: 421 RKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIF 480

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C        S  R   +   +L   F +  A IHG  S  +++ V++ F++G   +L+AT
Sbjct: 481 C--------STKRMCDQLARNLTRTFGA--AAIHGDKSQAERDDVLNQFRSGRTPVLVAT 530

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV D  +++  +  +     +H++ GR GR          +    +K++   +
Sbjct: 531 DVAARGLDVKDIRVVVNYDFPNGVEDYVHRI-GRTGRAGATGLAYTFFGDQDAKHASDLI 589

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMP 642
            +L+           ++  R  G +   ++ G P
Sbjct: 590 KILEGANQKVPPQVREMATRGGGGMNKFRRWGTP 623


>gi|159904844|ref|YP_001548506.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis C6]
 gi|159886337|gb|ABX01274.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
           C6]
          Length = 546

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 91/444 (20%), Positives = 163/444 (36%), Gaps = 71/444 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT  QE AI  +++      +   + Q   G+GKT    I +   ++ G    QA+I+AP
Sbjct: 25  PTPIQEQAIPILIEG-----KRDVVGQAQTGTGKTAAFGIPILETIDEGSRNTQALILAP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I     + ++ +  + G      + + L+R       I++GT     D 
Sbjct: 80  TRELAIQVAEEIDSIKGSKRLNIFPVYGGQSIDRQIRELKR----GVQIVVGTPGRILDH 135

Query: 390 IQYYKLILVIV--------DEQHRFGVQQR--LKLTQKATAPHVLLMTATPIPRTLVLTS 439
           I    + L  V        DE    G        L   +T   +LL +AT     + L  
Sbjct: 136 ISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRMLLFSATLPDSIMKLAK 195

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               +   I  K        T            ++    +    K   +   I+ +KE  
Sbjct: 196 NYMREYDIIKVKRQQLTTTLT------------DQSYYEIHSRDKFELLSRIIDVEKEFY 243

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  ++ V+  +S       +   +HG M+   +E  ++ FK     +L+AT V   
Sbjct: 244 GLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLEKFKARKINVLVATDVAAR 303

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+ D + ++  +      + +H++ GR GR  +    +    P      +  +  + N
Sbjct: 304 GIDINDLTHVVNYDIPQNPESYVHRI-GRTGRAGKQGYAVTFVEPSE-FRKFKYIQKIAN 361

Query: 614 TEDGFLIAEEDLKQRKEG-----EILGIKQ----SGMPKFLIAQPELHDSLLEIARKDAK 664
           T           + RKE      +I+G K+    SG+ + L +             K A 
Sbjct: 362 T-----------EIRKEEVPDVKDIIGAKKRKIVSGIKEVLESGKYNDCE------KMAA 404

Query: 665 HILTQ-DPD--LTSVRGQSIRILL 685
            +L   DP   L++V   +++  L
Sbjct: 405 ELLEDADPQEVLSAVLKYALKDEL 428


>gi|169831556|ref|YP_001717538.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638400|gb|ACA59906.1| DEAD/DEAH box helicase domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 533

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 78/345 (22%), Positives = 129/345 (37%), Gaps = 38/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q   I  +L           + Q   G+GKT    I +   ++A     Q ++M 
Sbjct: 30  EPSPIQLQTIPQLLDGRD------LVGQAQTGTGKTAAFAIPLLMRLQARRGWPQVLVMT 83

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   +  + T   V  + G      + K L+R       +++GT     D
Sbjct: 84  PTRELAIQVAEEFARVGRYTNTRVLPVYGGQSIGRQIKTLQR----GVDVVVGTPGRVLD 139

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            +    L        +L   DE    G    ++    AT          P  +TL+ ++ 
Sbjct: 140 HLNRKTLRLEQLQAVVLDEADEMLDMGFIDDIESILNATP---------PSRQTLLFSAT 190

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---KE 497
               I+++ EK   R P+   I P       I ++   L        +C  ++ +   + 
Sbjct: 191 IPGPIARLAEKYM-RTPVHVSINPEYVAAPDIWQVYYELRNIDHLEALCRILDAEAVERA 249

Query: 498 SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F     R + L E   S       IHG +    +  VM +F+ G   LL+AT V   G
Sbjct: 250 IIFCRTKRRVDELAEALRSRGYSADHIHGDLEQNQRNRVMGAFREGEIDLLVATDVAARG 309

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           IDV + S +I  +      + +H++ GR GR     + I L +P 
Sbjct: 310 IDVQNISHVINYDCPQDPESYVHRI-GRTGRAGRTGTAITLVYPK 353


>gi|312866897|ref|ZP_07727110.1| TRCF domain protein [Streptococcus parasanguinis F0405]
 gi|311097680|gb|EFQ55911.1| TRCF domain protein [Streptococcus parasanguinis F0405]
          Length = 405

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 87/245 (35%), Positives = 133/245 (54%), Gaps = 17/245 (6%)

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL +TATPIPRTL ++ LG  D+S I   P  R P++T ++  N    + + +   + 
Sbjct: 1   MDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTFVLETNPT-IIRDAVLREMD 59

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKN 539
            G + Y++  +++           ++ + L E    +SI  +HG+MS++  E+ +  F N
Sbjct: 60  RGGQVYYLYNKVDTID--------QKVSELKELIPEASIGFVHGQMSEVRLENTLLDFIN 111

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+ TT+IE G+D+ +A+ + IENA+H GL+ L+QLRGRVGR   I+   L+Y P 
Sbjct: 112 GEYDVLVTTTIIETGVDIPNANTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPD 171

Query: 600 --LSKNSYTRLSVLK---NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
             L++ S  RL  +K       GF IA  DL  R  G ILG  QSG         E++  
Sbjct: 172 KSLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFID--SVGFEMYSQ 229

Query: 655 LLEIA 659
           LLE A
Sbjct: 230 LLEEA 234


>gi|167946991|ref|ZP_02534065.1| putative ATP-dependent DNA helicase RecG [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 209

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 97/196 (49%), Positives = 134/196 (68%), Gaps = 1/196 (0%)

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           ++MTATPIPRTL +T+  D+DIS I E P GR P++TV+IP NR DEV+ER++   + G+
Sbjct: 1   MIMTATPIPRTLAMTAYADLDISLIDELPPGRTPVQTVVIPDNRRDEVVERVRAGCAAGR 60

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTC 542
           + YW+C  +EE +    ++      SL E      + ++HGR+   +KE +M  FK G  
Sbjct: 61  QVYWVCTLVEESELLQAQAAEASAESLTETLPELEVGLVHGRIKSDEKEQIMARFKAGEI 120

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+L+Y  PLS 
Sbjct: 121 DLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVDSHCVLMYQAPLSA 180

Query: 603 NSYTRLSVLKNTEDGF 618
           N+  RL++L+ + DG 
Sbjct: 181 NARQRLAILRESSDGL 196


>gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 492

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 76/417 (18%), Positives = 156/417 (37%), Gaps = 45/417 (10%)

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
           L   + +      + +   I + +      +PT  Q  AI  +L+          +    
Sbjct: 6   LAASRDQSMSFTSLGLSAPILKAVANKGYETPTPIQAQAIPAVLEGKDV------MAAAQ 59

Query: 302 VGSGKTLVALIAMAAAVEAG-------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            G+GKT    + +   +  G        +A+++ P   LA Q  E +  Y +   +   +
Sbjct: 60  TGTGKTAGFTLPLLELLSRGNRAQAKKVRALVLTPTRELAAQVAESVDTYGKYLPLKSAV 119

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQ 409
           + G +    +   L +       I++ T     D     ++ + +L ++++DE  R    
Sbjct: 120 VFGGVGIGPQISKLGK----GVDILVATPGRLLDLYNQGAVNFNQLEVLVLDEADRMLDM 175

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             +   +K       ++ A P  R  ++ S    D  +   K     P++  + P N   
Sbjct: 176 GFIHDIKK-------ILRALPAKRQNLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATA 228

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHG 523
           + +E+   ++ + +K   +   I++            +    R     E    + A IHG
Sbjct: 229 KSVEQYIYMVDQKQKTAALIHLIKQNDWQQVLVFSRTKHGANRIAKNLEAKDITAAAIHG 288

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
             S   +   + +FK+G  ++L+AT +   GID+     ++  +  +     +H++ GR 
Sbjct: 289 NKSQGARTKALANFKSGLVRVLVATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRI-GRT 347

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTE-----DGF----LIAEEDLKQRKEG 631
           GR       + L     SK       ++K        +GF    ++AE DL  RK G
Sbjct: 348 GRAGASGQAVSLVSADESKLLRDIERLIKKNIPRKEVEGFVPTQVVAETDLNDRKHG 404


>gi|150403372|ref|YP_001330666.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis C7]
 gi|150034402|gb|ABR66515.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
           C7]
          Length = 546

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 92/444 (20%), Positives = 162/444 (36%), Gaps = 71/444 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           PT  QE AI  +++      +   + Q   G+GKT    I +   ++      QA+I+AP
Sbjct: 25  PTPIQEQAIPILIEG-----KRDVVGQAQTGTGKTAAFGIPILETIDESSRNTQALILAP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I     + ++ V  + G      + + L+R       I++GT     D 
Sbjct: 80  TRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRELKR----GVQIVVGTPGRILDH 135

Query: 390 IQYYKLILVIV--------DEQHRFGVQQR--LKLTQKATAPHVLLMTATPIPRTLVLTS 439
           I    + L  V        DE    G        L   +T   +LL +AT     + L  
Sbjct: 136 ISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRMLLFSATLPDSIMKLAK 195

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               +   I  K        T            ++    +    K   +   I+ +KE  
Sbjct: 196 NYMREYDIIKVKRQQLTTTLT------------DQSYYEIHSRDKFELLSRIIDVEKEFY 243

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  ++ V+  +S       +   +HG M+   +E  +D FK     +L+AT V   
Sbjct: 244 GLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKINVLVATDVAAR 303

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+ D + ++  +      + +H++ GR GR  +    +    P      +  +  + N
Sbjct: 304 GIDINDLTHVVNYDIPQNPESYVHRI-GRTGRAGKQGYAVTFVEPSE-FRKFKYIQKIAN 361

Query: 614 TEDGFLIAEEDLKQRKEG-----EILGIKQ----SGMPKFLIAQPELHDSLLEIARKDAK 664
           T           + RKE      +I+G K+    SG+ + L +             K A 
Sbjct: 362 T-----------EIRKEEVPDVKDIIGAKKRKIVSGIKELLESGKYNDCE------KMAA 404

Query: 665 HILTQ-DPD--LTSVRGQSIRILL 685
            +L   DP   L++V   +++  L
Sbjct: 405 ELLEDADPQEVLSAVLKYALKDEL 428


>gi|213618724|ref|ZP_03372550.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 180

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 12/186 (6%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           M    L+ +  PL++  GVG   S  L+KI            DLL + P  + DR +   
Sbjct: 1   MSGRLLDAV--PLNSLTGVGAAQSSKLAKI------GLHTVQDLLLHLPLRYEDRTHLYP 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           I E+      T+ G +  + +     RR     ++DG+G +T+ FF     M KN    G
Sbjct: 53  IGELLPGIYATVEGEVL-NCNITFGGRRMMTCQISDGSGILTMRFFNFNAAM-KNSLATG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNS--QDVNFPLIEAVYSLPTGLSVDLFKKIIVEA 178
           R++   G+ K+ K    M+HP Y              +  VY    G+     +K+  +A
Sbjct: 111 RRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 170

Query: 179 LSRLPV 184
           L  L  
Sbjct: 171 LELLDT 176


>gi|225378011|ref|ZP_03755232.1| hypothetical protein ROSEINA2194_03671 [Roseburia inulinivorans DSM
           16841]
 gi|225210164|gb|EEG92518.1| hypothetical protein ROSEINA2194_03671 [Roseburia inulinivorans DSM
           16841]
          Length = 190

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 75/179 (41%), Positives = 116/179 (64%), Gaps = 1/179 (0%)

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           I ++HG+M    K  VM+ F     ++L++TTV+EVG++V +A++++IENAEHFGLAQLH
Sbjct: 11  IGLLHGQMKSAQKNDVMERFAANEIQVLVSTTVVEVGVNVPNATVMMIENAEHFGLAQLH 70

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
           QLRGRVGRG+  S CI + +   SK S  RL +L  + DGF IA EDLK R  G+  GI+
Sbjct: 71  QLRGRVGRGDAQSYCI-MVNCSNSKESQKRLDILNQSNDGFKIASEDLKLRGPGDFFGIR 129

Query: 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
           QSG  +F +A       +++ A ++   IL +DP+L+S   ++++  L L+  ++  + 
Sbjct: 130 QSGEMQFALADIYQDAYIMQRASEEVADILGKDPELSSEDHKNLKDYLELFLADQRNKL 188


>gi|330961130|gb|EGH61390.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 459

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 94/456 (20%), Positives = 185/456 (40%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ ++  T  Q  ++  IL+ M        I Q   GSGKT    I +   +     G
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMD------LIAQAKTGSGKTAAFGIGLLNPINPRFFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA Q  + I++  +    I V  + G +    +  +LE      AHII+
Sbjct: 73  CQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH----GAHIIV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q  ++   L+L  ++        + L +    +   ++  T     +TL+ ++ 
Sbjct: 129 GTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQT-PQRRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
             + I +++ K       +TV +     D  IE++   +S  ++   +   +   +    
Sbjct: 188 YPVGIKQLSSKFMRDP--QTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSC 245

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + V E  + L     S++ + HG +   D++ V+  F N +  +L+AT V   
Sbjct: 246 VAFCFTKQQVQEVVDHLTAKGMSAVGL-HGDLEQRDRDQVLAMFANRSTSVLVATDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK- 612
           G+D+    ++I           +H++ GR GR  E    + L  P  S+ +     + K 
Sbjct: 305 GLDIDALDMVINVELARDSEIHIHRV-GRTGRAGEKGIAVSLVAPSESQRARAIEELQKA 363

Query: 613 ----NTEDGFLI--------AEEDL-------KQRKEGEILG--IKQSGMPKFLIAQPEL 651
                  D   I        A   L        + + G+ILG    ++G+P   + +  +
Sbjct: 364 PLNWQQYDNLSIKEGGKLLPAMTTLCIGSGRKDKLRPGDILGALTGEAGIPGTQVGKIAI 423

Query: 652 HD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            D  + + + R  AK  L +  +   ++G+S+R+ +
Sbjct: 424 FDFQAYVAVERSMAKQALERLNN-GKIKGKSLRVRI 458


>gi|195572505|ref|XP_002104236.1| GD20854 [Drosophila simulans]
 gi|194200163|gb|EDX13739.1| GD20854 [Drosophila simulans]
          Length = 784

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 136/376 (36%), Gaps = 36/376 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGGQ---AVIM 327
            PT  Q+ AI  I+           +     GSGKT   L+ +     E G Q    +++
Sbjct: 317 KPTPVQKHAIPIIINGRD------LMACAQTGSGKTAAFLVPILNQMYELGHQYPLGLVL 370

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA Q +E  KK+   +++   ++ G    + + + L+R      H+I+ T    +
Sbjct: 371 APTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDR----GCHLIVATPGRLE 426

Query: 388 DSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           D I   K+ L  +     DE  R          Q       L M  T   +TL+ ++   
Sbjct: 427 DMITRGKVGLENIRFLVLDEADRMLDMGFEP--QIRRIVEQLNMPPTGQRQTLMFSATFP 484

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----- 497
             I ++         I   +  +    E I +  + + E  K  ++   +   ++     
Sbjct: 485 KQIQELASDFL-SNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYT 543

Query: 498 --------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +   +            +  IHG  +  ++E  +  F++G C +L+AT 
Sbjct: 544 KDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATA 603

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR   +      ++          L 
Sbjct: 604 VAARGLDIPHVKHVINFDLPSDVEEYVHRI-GRTGRMGNLGVATSFFNEKNRNICSDLLE 662

Query: 610 VLKNTEDGFLIAEEDL 625
           +L  T+       ED+
Sbjct: 663 LLIETKQEIPSFMEDM 678


>gi|321476533|gb|EFX87493.1| hypothetical protein DAPPUDRAFT_306483 [Daphnia pulex]
          Length = 805

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 146/386 (37%), Gaps = 44/386 (11%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 N + K+   I ++   +PT  Q  AI   L           I     GSGKT  
Sbjct: 300 CSFAHFNFDEKLMNVIRKSEFTNPTPIQSQAIPAALSGRDV------IGIAQTGSGKTAA 353

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L  M   +          G   +I+AP   L+QQ Y   KK+ +   I V    G   +
Sbjct: 354 FLWPMIVHILDQPDLKPGDGPIGLILAPTRELSQQIYTEAKKFCKVFGISVVCCYGGGSK 413

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + K LE+     A I++ T     D ++           L+L   D     G + +++
Sbjct: 414 WEQSKDLEQ----GAEIVVATPGRMIDLVKIKATNLQRVTFLVLDEADRMFDMGFEPQVR 469

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                         A P  +TL+ ++     I K+  +     PI+ V   +   ++ + 
Sbjct: 470 SICNH---------ARPERQTLLFSATFKKRIEKLA-RDVLSDPIRIVQGDVGEANQDVT 519

Query: 474 RLKVVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
           ++  V++   K  W+  ++ E             ++  E  ++  +    S+A++HG M 
Sbjct: 520 QVIEVIAPTAKYSWLITRLVEFMASGSVLIFVTKKANAEELSASLKSRELSVALLHGDMD 579

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            +D+  V+ SFK     +L+AT V   G+D+     ++  +         H++ GR GR 
Sbjct: 580 QVDRNQVISSFKKKEMDILVATDVAARGLDIPHIRTVVNYDIARDIDTHTHRI-GRTGRA 638

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLK 612
            E  +   L  P   + +   +  L+
Sbjct: 639 GEKGTAYTLVTPADKEFAGHLVRNLE 664


>gi|329895752|ref|ZP_08271143.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088]
 gi|328922182|gb|EGG29538.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088]
          Length = 462

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 89/453 (19%), Positives = 173/453 (38%), Gaps = 50/453 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  QE +I  IL+          +++   GSGKT    I +   +     G
Sbjct: 19  LEALGYKAMTPVQEQSIPLILKGRD------LVVRAKTGSGKTATFGIGLLNKINPRFFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    I++   Q   I V ++ G  P   +R +L+      AH+++
Sbjct: 73  AQALVLCPTRELADQVGAEIRRLASQMPNIKVVMLCGGKPFGAQRDSLQH----GAHVVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT     D +    L +  V          R+     A     ++       +TL+ ++ 
Sbjct: 129 GTPGRIHDHLTKGTLQIDQVS-TLVLDEADRMLDMGFADTMQAIIAEVPKNRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
              +I KI+        +  V   +   + VIE+L   + + ++   +    E  +  N 
Sbjct: 188 YPDNIQKISRSIQANPAMVQVDDDVAHEEGVIEQLFFEIKKHERYPTLLALFEHYRPKNA 247

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   E  + L+EH   + A+ HG M   +++ V+  F NG+C +L+AT V   
Sbjct: 248 AVFCNTKKQCAEVADFLNEHDIEAKAL-HGDMDQRERDQVLLQFANGSCPVLVATDVAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   ++++           +H++ GR GR  E      L     +            
Sbjct: 307 GLDIKSLAMVVNYELPRDPEIYVHRI-GRTGRAGETGLAFSLVTESETPRLRQIEQYQDQ 365

Query: 614 TEDGFLIAEEDL----KQRK----------------EGEILG--IKQSGMPKFLIAQPEL 651
                ++A  D     + +                  G+ILG     +G+P   I +  +
Sbjct: 366 PCACDVLASLDRDPNYELKGEWVTIQFDSGRKQKMRPGDILGALTGDAGLPGSAIGKITI 425

Query: 652 HD--SLLEIARKDAKHILTQDPDLTSVRGQSIR 682
            D  S + ++R   +  +        ++G+++R
Sbjct: 426 ADYSSYVAVSRDVLRQAMN-YVSQGKIKGRNVR 457


>gi|225432126|ref|XP_002274485.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1864

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/397 (19%), Positives = 152/397 (38%), Gaps = 47/397 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-------AAVEAGGQA 324
           SPT  Q       LQ          +     GSGKTL  LI            V+ G   
Sbjct: 520 SPTPIQAQTWPIALQGRD------IVAIAKTGSGKTLGYLIPAFILLRRRRNNVQNGPTV 573

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  +   K+ +++++    + G   +  + K L+R     A +++ T  
Sbjct: 574 MVLAPTRELATQIQDETIKFGRSSRVSCACLYGGTSRNAQLKELDR----GADVVVATPG 629

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRT 434
              D ++  K        L+L   D     G + +++    +       L+ TAT     
Sbjct: 630 RLNDILESKKIDLGQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEV 689

Query: 435 L-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +L +   ++I  + E  A +   + V ++        +E++      G K    
Sbjct: 690 RKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVSPPEKQRRLEQILRSQERGSKVIIF 749

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C        S  +   +   S+  +F +++  IHG  S ++++ V++ F++G   +L+AT
Sbjct: 750 C--------STKKLCDQLARSIGRNFGAAV--IHGDKSQVERDWVLNQFRSGKSPILVAT 799

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D  ++I  +        +H++ GR GR          +     K +   +
Sbjct: 800 DVAARGLDIKDIRVVINYDFPTGIEDYVHRI-GRTGRAGATGVSYTFFSEQDCKYAADLI 858

Query: 609 SVLKNTEDGFLIAEEDLKQR-KEGEILGIKQSGMPKF 644
            VL+           D+  R   G   G  + G+ +F
Sbjct: 859 KVLEGANQRVPPEVRDMALRSGPG--FGKDRGGVNRF 893


>gi|298708154|emb|CBJ30495.1| RecG-like helicase [Ectocarpus siliculosus]
          Length = 435

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 118/250 (47%), Gaps = 16/250 (6%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P    +GVG + +  L+K+        T   DLL++ P+  +DR    +++ + E  + T
Sbjct: 193 PEDALKGVGPRKAEQLAKL------GVTTVADLLWHLPTGMVDRRETSRVANLVEGEVAT 246

Query: 72  ITGYISQHSSFQLQKR-RPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           +   + +  S   ++  R  ++   D    +I ++ F      L   +  G    V+GK+
Sbjct: 247 LLLKVVKVQSDPRKRSPRITRVHCVDVVEDKIDIVMF--GGSWLCKNYEPGETKVVSGKV 304

Query: 130 --KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVL-- 185
              K    ++M  P  +   +      +I+  Y L  GLS    + +I  AL +L  +  
Sbjct: 305 TMDKYSGALVMNSPEVVAPAADLEKVLVIQPTYPLTAGLSGSSLRSVIALALDQLEGVTQ 364

Query: 186 --PEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM 243
             PEWI+++ +++  +PS+ EA +  H+P++ +D   +   R RLAYDELLA QI L L 
Sbjct: 365 FPPEWIDQETMREHGWPSLREALSAAHSPQQEEDLRPSGATRSRLAYDELLASQIVLALR 424

Query: 244 RKQFKKEIGI 253
           R+Q  +    
Sbjct: 425 RRQNSRHWWR 434


>gi|124485198|ref|YP_001029814.1| hypothetical protein Mlab_0371 [Methanocorpusculum labreanum Z]
 gi|124362739|gb|ABN06547.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
           Z]
          Length = 656

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 76/343 (22%), Positives = 124/343 (36%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            PT  Q  AI  IL             Q   G+GKT    I +   ++      QA++++
Sbjct: 27  EPTPIQAMAIPQILDGKDVTG------QAQTGTGKTAAFGIPIIERLDPDNKNVQALVLS 80

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +  +    + V  I G  P   + +AL     G   ++IGT     
Sbjct: 81  PTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLRAL----KGTVQVVIGTPGRVI 136

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVL 437
           D I+   L L  V        D+    G ++ +             +L +AT     L +
Sbjct: 137 DHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQTILFSATMPQPILDI 196

Query: 438 TSLGDID--ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           T     D    KIT K      I+   I +   D++    + +     +   +       
Sbjct: 197 TRRFQRDPQFVKITRKELTVPQIEQTYIEVRERDKLEALCRTLDMNNPELALVF------ 250

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +  V+   S  +     +  +HG M    ++ VM  F++G+  +LIAT V   GI
Sbjct: 251 --CNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVLIATDVAARGI 308

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV D  I+   +        +H++ GR  R       +    P
Sbjct: 309 DVDDVDIVFNYDVPQDVEYYVHRI-GRTARAGRTGKSVTFVAP 350


>gi|15230730|ref|NP_187299.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75313790|sp|Q9SQV1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40
 gi|6437557|gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana]
 gi|332640879|gb|AEE74400.1| DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana]
          Length = 1088

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 84/389 (21%), Positives = 150/389 (38%), Gaps = 45/389 (11%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--- 319
           + +    P SPT  Q       LQ          +     GSGKTL  LI     +    
Sbjct: 449 ELLSAGFP-SPTPIQAQTWPIALQSRD------IVAIAKTGSGKTLGYLIPAFILLRHCR 501

Query: 320 ----AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +I+AP   LA Q  +   ++ ++++I    + G  P+  + K LER     
Sbjct: 502 NDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELER----G 557

Query: 376 AHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLL 425
           A I++ T     D      I + ++ L+++DE  R        Q R  + +       L+
Sbjct: 558 ADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLM 617

Query: 426 MTATPIPRTL-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVL 479
            TAT           +L +   ++I ++ E  A +   + V ++P    +  +E++    
Sbjct: 618 YTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQ 677

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G K    C        S  R       S+  HF + +  IHG  +  +++ V++ F++
Sbjct: 678 ERGSKVIIFC--------STKRLCDHLARSVGRHFGAVV--IHGDKTQGERDWVLNQFRS 727

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +LIAT V   G+D+ D  ++I  +        +H++ GR GR          +   
Sbjct: 728 GKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRI-GRTGRAGATGVAFTFFTEQ 786

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
             K +   + VL+           D+  R
Sbjct: 787 DWKYAPDLIKVLEGANQQVPPQVRDIAMR 815


>gi|315274587|ref|ZP_07869462.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120]
 gi|313615782|gb|EFR89035.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120]
          Length = 409

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 17/249 (6%)

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            VL +TATPIPRTL ++ LG  D+S I   PA R P++T +   N +  V E ++  L+ 
Sbjct: 4   DVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNV-LVREAIERELAR 62

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT-SSIAIIHGRMSDIDKESVMDSFKNG 540
             + Y++  ++E        S+ ++ + +      + +A  HG+M + + ESV+ SF  G
Sbjct: 63  DGQVYYLYNRVE--------SITQKADEISAMVPDARVATAHGQMGESELESVILSFLEG 114

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
              +L+ TT+IE G+D+ + + + +++A+  GL+QL+QLRGRVGR   I+    +Y    
Sbjct: 115 EFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDK 174

Query: 600 -LSKNSYTRLSVLKNTE---DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
            L + +  RLS +K       GF IA  DL  R  G ILG +Q G    +     L+  +
Sbjct: 175 ILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFD--LYSQM 232

Query: 656 LEIARKDAK 664
           L+ A +  K
Sbjct: 233 LKEAIEAKK 241


>gi|255560866|ref|XP_002521446.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539345|gb|EEF40936.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 781

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 147/403 (36%), Gaps = 47/403 (11%)

Query: 255 INVEGKIAQKILRNI--PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               G  ++ +   +   FS PT  Q  +    LQ          +     GSGKTL  L
Sbjct: 165 FEATGFPSEILREVLSAGFSVPTPIQAQSWPIALQSKD------IVAIAKTGSGKTLGYL 218

Query: 312 IAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           +     ++        G   ++++P   LA Q  +   K+ ++++I    + G  P+  +
Sbjct: 219 LPGFIHLKRCRNDPQLGPTVLVLSPTRELATQIQDEAVKFGRSSRISCTCLYGGAPKGPQ 278

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKL 414
            K L+R       I++ T     D ++  +        L+L   D     G   Q R  +
Sbjct: 279 LKELDR----GVDIVVATPGRLNDILEMRRISLSQVSYLVLDEADRMLDMGFEPQIRKIV 334

Query: 415 TQKATAPHVLLMTATPIPRTL-----VLTSLGDIDISKITEKPAGRK-PIKTVIIPINRI 468
            +  +    L+ TAT           +L +   ++I  + E  A +       ++     
Sbjct: 335 KEVPSRRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELVANKSITQYIEVLAPMEK 394

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
              +E++      G K    C        S  +   +   +L   F +  A IHG  S  
Sbjct: 395 HRRLEQILRSQEPGSKIIIFC--------STKKMCDQLARNLTRTFGA--AAIHGDKSQS 444

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +++ V+  F+ G   +L+AT V   G+D+ D  ++I  +        +H++ GR GR   
Sbjct: 445 ERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRI-GRTGRAGA 503

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
                  +    +K +   + VL+           D+  R  G
Sbjct: 504 TGVAYTFFGDQDAKYASDLIKVLEGASQRVPPEIRDMASRGSG 546


>gi|115375824|ref|ZP_01463075.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
 gi|310820250|ref|YP_003952608.1| ATP-dependent RNA helicase rhle [Stigmatella aurantiaca DW4/3-1]
 gi|115367134|gb|EAU66118.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
 gi|309393322|gb|ADO70781.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
          Length = 496

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 136/362 (37%), Gaps = 39/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q+ AI   L           +     G+GKT    + +   + AG          
Sbjct: 23  TPTPIQQRAIPPALTGQDV------LGCAQTGTGKTAAFALPILHRLSAGRSPPPAQGRP 76

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            + +++ P   LA Q  +  + Y + T +   +I G + Q  + + L R       ++I 
Sbjct: 77  IRVLVLTPTRELASQIADSFQAYGRFTGLSWAVIFGGVGQHAQEQTLRR----GVDVLIA 132

Query: 382 THALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D      + Y  L + ++DE  R      +   +       ++    P  +TL 
Sbjct: 133 TPGRLLDLMGQGLVSYKALEVFVLDEADRMLDMGFIHDVK------RIISALPPKRQTLF 186

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE-- 494
            ++    +I  + +    + P++  + P +   E +E+    +   +K + +   + +  
Sbjct: 187 FSATMPPEIQSLAQ-GILKSPVRVEVTPESTTAETVEQKMFFVEREQKRHLLVHLLGDAS 245

Query: 495 ----KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  +  +    R          S   IHG  S   +E  + +FK+G+C++L+AT +
Sbjct: 246 IRRALVFTRTKHGANRVAKHLASSRISAEAIHGNKSQNARERALGAFKDGSCRVLVATDI 305

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GID+   + +I  +  +   + +H++ GR GR   + + +                 
Sbjct: 306 AARGIDIEGITHVINFDLPNIPESYVHRI-GRTGRAGAVGTALSFCDGEERAYLRDIERT 364

Query: 611 LK 612
           ++
Sbjct: 365 IR 366


>gi|330976959|gb|EGH76980.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 459

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 100/463 (21%), Positives = 179/463 (38%), Gaps = 66/463 (14%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ ++  T  Q  ++  IL+ M        I Q   GSGKT    I +   +     G
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMD------LIAQAKTGSGKTAAFGIGLLNPINPRFFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA Q  + I++  +    I V  + G +    +  +LE      AHII+
Sbjct: 73  CQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH----GAHIIV 128

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATP 430
           GT    Q  ++   L+L  +        D     G    +     Q       LL +AT 
Sbjct: 129 GTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATY 188

Query: 431 I--PRTLVLTSLGDIDISKITEKPAG--RKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
               + L    + D  I K+    A    + I   I P  R++ V++ L         A+
Sbjct: 189 PVGIKQLSSKFMRDPQIVKVEALHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAF 248

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                         + V E  + L     S++ + HG +   D++ V+  F N +  +L+
Sbjct: 249 CF----------TKQQVQEVVDHLTAKGMSAVGL-HGDLDQRDRDQVLAMFANRSTSVLV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+    ++I           +H++ GR GR  E    + L  P  S+ +  
Sbjct: 298 ATDVAARGLDIDALDMVINVELARDSEIHIHRV-GRTGRAGEKGIAVSLVAPSESQRARA 356

Query: 607 RLSVLKNTEDG-------------FLIAEEDL-------KQRKEGEILG--IKQSGMPKF 644
              + K   +               L A   L        + + G+ILG    ++G+P  
Sbjct: 357 IEELQKAPLNWQQYDRLSIKEGGKLLPAMTTLCIGSGRKDKLRPGDILGALTGEAGIPGT 416

Query: 645 LIAQPELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            + +  + D  + + + R  AK  L +  +   ++G+S+R+ +
Sbjct: 417 QVGKIAIFDFQAYVAVERSMAKQALERLNN-GKIKGKSLRVRI 458


>gi|218507810|ref|ZP_03505688.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
           Brasil 5]
          Length = 318

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 122/250 (48%), Gaps = 2/250 (0%)

Query: 217 DFEWTSPARERLAYDELLAGQIALLLMR--KQFKKEIGIPINVEGKIAQKILRNIPFSPT 274
           D       + R A  +     +A  L+R   +        +     +  +     P+  T
Sbjct: 69  DKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLTRHAPVLTSPDGLYDEFAARFPYDET 128

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334
           + Q++AI  +  D+     M R++ GDVG GKT VAL A   A   G Q  ++ P  +LA
Sbjct: 129 EDQDNAIDAVRSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAVVVPTTLLA 188

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
           +QH++   +  +   + V+  +  +         + +A G+  I++GTHAL    I++  
Sbjct: 189 RQHFKTFSERFRGLPVRVQQASRLVGAKDLALTKKEVAEGKTDIVVGTHALLGAGIKFAN 248

Query: 395 LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           L L+++DE+  FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  
Sbjct: 249 LGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVD 308

Query: 455 RKPIKTVIIP 464
           R  ++T I P
Sbjct: 309 RMAVRTFISP 318


>gi|223939310|ref|ZP_03631190.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223892023|gb|EEF58504.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 412

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/355 (20%), Positives = 138/355 (38%), Gaps = 34/355 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            PT  Q  AI  IL           I     G+GKT    + + + +E+     + +I+ 
Sbjct: 23  EPTPIQLRAIPLILSGQDV------IGSAQTGTGKTAAFALPILSKLESHQPRPRLLILE 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I+ + + T +   ++ G +    +  AL+        III T     D
Sbjct: 77  PTRELAAQVETAIRDFARFTNLRAAVLYGGVGYGRQMDALKA----GVDIIIATPGRLLD 132

Query: 389 SIQY--------YKLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR--TLV 436
            ++           L+L   D     G     R  + +     H  L +AT  P+  TL+
Sbjct: 133 HLERGTCKFDQIKYLVLDEADRMLDMGFLPDVRRIVDKCPRDRHTSLFSATVPPQIETLI 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
             ++ +    +I  + +  + +K VI P+   D+  + L+ +L        I        
Sbjct: 193 KWAMKNPQTIEIGARRSPAETVKHVIYPVAE-DQKSDLLRELLERVNYDSVIVF------ 245

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   +R   L +    ++A++H   +  ++E  +  F+NG  ++L+AT +   G+D
Sbjct: 246 -CRTKHRADRIAILLKRNNHAVAVLHSNRTQREREDALKGFRNGRFEVLVATDIAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           + D S +I  +        +H++ GR GR         L     S++  +    +
Sbjct: 305 IADVSHVINYDVPQHPEDYIHRI-GRTGRAAATGDAFTLMVAEDSQHVQSIERFI 358


>gi|330900813|gb|EGH32232.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 459

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 93/456 (20%), Positives = 183/456 (40%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ ++  T  Q  ++  IL+ M        I Q   GSGKT    I +   +     G
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMD------LIAQAKTGSGKTAAFGIGLLNPINPRFFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA Q  + I++  +    I V  + G +    +  +LE      AHII+
Sbjct: 73  CQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH----GAHIIV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q  ++   L+L  ++        + L +        ++  T     +TL+ ++ 
Sbjct: 129 GTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQT-PKRRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
               I +++ K       +TV +     D  IE++   +S  ++   +   +   +    
Sbjct: 188 YPAGIKQLSSKFMRDP--QTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLGHFRPASC 245

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + V E  + L     S++ + HG +   D++ V+  F N +  +L+AT V   
Sbjct: 246 VAFCFTKQQVQEVVDHLTAKGMSAVGL-HGDLEQRDRDQVLAMFANRSTSVLVATDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+    ++I           +H++ GR GR  E    + L  P  S+ +     + K 
Sbjct: 305 GLDIDALDMVINVELARDSEIHIHRV-GRTGRAGEKGIAVSLVAPSESQRARAIEELQKA 363

Query: 614 TEDG-------------FLIAEEDL-------KQRKEGEILG--IKQSGMPKFLIAQPEL 651
             +               L A   L        + + G+ILG    ++G+P   + +  +
Sbjct: 364 PLNWQQYDRLSIKEGGKLLPAMTTLCIGSGRKDKLRPGDILGALTGEAGIPGTQVGKIAI 423

Query: 652 HD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            D  + + + R  AK  L +  +   ++G+S+R+ +
Sbjct: 424 FDFQAYVAVERSMAKQALERLNN-GKIKGKSLRVRI 458


>gi|213967864|ref|ZP_03396010.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           T1]
 gi|213927207|gb|EEB60756.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           T1]
          Length = 473

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 92/456 (20%), Positives = 184/456 (40%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ ++  T  Q  ++  IL+ M        I Q   GSGKT    I +   +     G
Sbjct: 33  LESLGYAEMTPIQAQSLPVILKGMD------LIAQAKTGSGKTAAFGIGLLNPINPRFFG 86

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA Q  + I++  +    I V  + G +    +  +LE      AHII+
Sbjct: 87  CQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH----GAHIIV 142

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q  ++   L+L  ++        + L +    +   ++  T     +TL+ ++ 
Sbjct: 143 GTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQT-PQRRQTLLFSAT 201

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
             + I +++ K       +TV +     D  IE++   +S  ++   +   +   +    
Sbjct: 202 YPVGIKQLSSKFMRDP--QTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSC 259

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + V E  + L     S++ + HG +   D++ V+  F N +  +L+AT V   
Sbjct: 260 VAFCFTKQQVQEVVDHLTAKGMSAVGL-HGDLEQRDRDQVLAMFANRSTSVLVATDVAAR 318

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK- 612
           G+D+    +++           +H++ GR GR  E    + L  P  S+ +     + K 
Sbjct: 319 GLDIDALDMVLNVELARDSEIHIHRV-GRTGRAGETGIAVSLVAPSESQRARAIEELQKA 377

Query: 613 ----NTEDGFLI--------AEEDL-------KQRKEGEILG--IKQSGMPKFLIAQPEL 651
                  D   I        A   L        + + G+ILG    ++G+    + +  +
Sbjct: 378 PLNWQQYDSLSIKEGGKLLPAMTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAI 437

Query: 652 HD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            D  + + + R  AK  L +  +   ++G+S+R+ +
Sbjct: 438 FDFQAYVAVERSMAKQALERLNN-GKIKGKSLRVRI 472


>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 513

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 74/387 (19%), Positives = 149/387 (38%), Gaps = 45/387 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
           +P+  Q  AI  +L+          +     G+GKT    + +   +  G        +A
Sbjct: 45  TPSPIQAQAIPAVLEGKDV------MAAAQTGTGKTAGFTLPLLELLTRGNRAQAKQVRA 98

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +N  +   ++ G +    +   L +       I++ T  
Sbjct: 99  LVLTPTRELAAQVAESVETYGKNLPLRSAVVFGGVGIGPQISKLGK----GVDILVATPG 154

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++ + +L ++I+DE  R      +   +K       ++   P  R  ++ S
Sbjct: 155 RLLDLFNQRALNFNQLEVLILDEADRMLDMGFIHDIKK-------ILKVLPAKRQNLMFS 207

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N   + +E+    + + +K   +   I++     
Sbjct: 208 ATFSDDIRKLAKGLVNNPVEISVTPRNATAKTVEQYIYQVDQKQKTAALIHLIKQNDWKQ 267

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E    + A IHG  S   +   + +FK+G  ++L+AT +   
Sbjct: 268 VLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKSGEVRVLVATDIAAR 327

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++  +  +     +H++ GR GR       + L     SK       ++K 
Sbjct: 328 GIDIDQLPNVVNFDLPNVPEDYVHRI-GRTGRAGADGQAVSLVSGDESKLLRDIERLIKQ 386

Query: 614 TE-----DGF----LIAEEDLKQRKEG 631
                  +GF    ++AE DL +RK G
Sbjct: 387 KIPRKEVEGFVPTQVVAETDLNERKHG 413


>gi|237798217|ref|ZP_04586678.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021069|gb|EGI01126.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 459

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 92/456 (20%), Positives = 184/456 (40%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ ++  T  Q  ++  IL+ M        I Q   GSGKT    I +   +     G
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMD------LIAQAKTGSGKTAAFGIGLLNPINPRFFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA Q  + I++  +    I V  + G +    +  +LE      AHII+
Sbjct: 73  CQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH----GAHIIV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q  ++   L+L  ++        + L +    +   ++  T     +TL+ ++ 
Sbjct: 129 GTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQT-PQRRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
             + I +++ K       +TV +     D  IE++   +S  ++   +   I   +    
Sbjct: 188 YPVGIKQLSSKFMRDP--QTVKVEALHADSQIEQIFYEISPEQRLEAVVKVIGHFRPTSC 245

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + V E  + L     S++ + HG +   D++ V+  F N +  +L+AT V   
Sbjct: 246 VAFCFTKQQVQEVVDHLTAKGMSAVGL-HGDLEQRDRDQVLAMFANRSTSVLVATDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+    +++           +H++ GR GR  E    + L  P  S+ +     + K 
Sbjct: 305 GLDIDALDMVLNVELARDSEIHIHRV-GRTGRAGEKGIAVSLVAPSESQRARAIEELQKA 363

Query: 614 TEDG-------------FLIAEEDL-------KQRKEGEILG--IKQSGMPKFLIAQPEL 651
             +               L A   L        + + G+ILG    ++G+    + +  +
Sbjct: 364 PLNWQQYDKLSIKEGGKLLPAMTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAI 423

Query: 652 HD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            D  + + + R  AK  L +  +   ++G+S+R+ +
Sbjct: 424 FDFQAYVAVERSMAKQALERLNN-GKIKGKSLRVRI 458


>gi|87118190|ref|ZP_01074089.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
 gi|86165824|gb|EAQ67090.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
          Length = 461

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 95/462 (20%), Positives = 171/462 (37%), Gaps = 62/462 (13%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           +L ++ F   T  Q   +  IL D         + Q   GSGKTL   I M   +     
Sbjct: 19  LLSDLGFETFTPIQAQTLPSILSD------NDILAQAQTGSGKTLAFAIGMLMKINPRYF 72

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           G Q ++M P   LA Q  + I+K  +    I V  + G MP   +  +LE      AHI+
Sbjct: 73  GVQGLVMCPTRELADQVCKEIRKTARFLENIKVLSLCGGMPFGPQIGSLEH----GAHIV 128

Query: 380 IGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLK-LTQKATAPHVLLMTATP 430
           +GT     + ++           L+L   D     G    ++ L +        LM +  
Sbjct: 129 VGTPGRLLEHVRKGTLRLDSLNTLVLDEADRMLDMGFVDSIRTLVESTPKKRQTLMFSAT 188

Query: 431 IPRTL---VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK-KAY 486
            P T+         +    K+      +  IK   +  N+ D+    +  V  +   +A 
Sbjct: 189 YPETIGKISAEFQHNPKTIKVEATQESKPDIKQFFVKSNKDDKPYALMSAVRYQNPEQAI 248

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C           +   +           S   IHG +   D++ V+  F N +C++L+
Sbjct: 249 VFCNT---------KIECQTIADFLVDHKISAKAIHGDLEQRDRDQVLVQFSNASCRILV 299

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   GIDV +   +I  +         H++ GR GR       I L     +     
Sbjct: 300 ATDVAARGIDVKEVDTVINYDTTRDIDVHTHRI-GRTGRAGNKGVAINLVTDKDTYKVKD 358

Query: 607 RLSVLKNTEDGFLIAEE-DLKQR------------------KEGEILGIKQS--GMPKFL 645
                +   D   +  + D + R                  + G+I+G   +  G+ K  
Sbjct: 359 IEDRFEIQADYLELDPKYDAEFRLIPNMTTICFDAGRKDKLRPGDIVGALTAGVGLAKDE 418

Query: 646 IAQPELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           + +  + D  + + IA K AK+++++      ++G++I++ +
Sbjct: 419 VGKINVFDRRAYVAIANKQAKYVVSEL-QTKKIKGRTIKVRI 459


>gi|330873852|gb|EGH08001.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963764|gb|EGH64024.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 459

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 92/456 (20%), Positives = 184/456 (40%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ ++  T  Q  ++  IL+ M        I Q   GSGKT    I +   +     G
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMD------LIAQAKTGSGKTAAFGIGLLNPINPRFFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA Q  + I++  +    I V  + G +    +  +LE      AHII+
Sbjct: 73  CQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH----GAHIIV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q  ++   L+L  ++        + L +    +   ++  T     +TL+ ++ 
Sbjct: 129 GTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQT-PQRRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
             + I +++ K       +TV +     D  IE++   +S  ++   +   +   +    
Sbjct: 188 YPVGIKQLSSKFMRDP--QTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSC 245

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + V E  + L     S++ + HG +   D++ V+  F N +  +L+AT V   
Sbjct: 246 VAFCFTKQQVQEVVDHLTAKGMSAVGL-HGDLEQRDRDQVLAMFANRSTSVLVATDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK- 612
           G+D+    +++           +H++ GR GR  E    + L  P  S+ +     + K 
Sbjct: 305 GLDIDALDMVLNVELARDSEIHIHRV-GRTGRAGETGIAVSLVAPSESQRARAIEELQKA 363

Query: 613 ----NTEDGFLI--------AEEDL-------KQRKEGEILG--IKQSGMPKFLIAQPEL 651
                  D   I        A   L        + + G+ILG    ++G+    + +  +
Sbjct: 364 PLNWQQYDNLSIKEGGKLLPAMTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAI 423

Query: 652 HD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            D  + + + R  AK  L +  +   ++G+S+R+ +
Sbjct: 424 FDFQAYVAVERSMAKQALERLNN-GKIKGKSLRVRI 458


>gi|327284970|ref|XP_003227208.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Anolis
           carolinensis]
          Length = 647

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 87/448 (19%), Positives = 157/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF--KKEIGIPINVEG 259
             + +++   P+  K+F    P   RL        ++  L  +K+   +   G P  V  
Sbjct: 33  RKKKWDLSELPKFEKNFYSEHPEVARL-----TPYEVDELRRKKEITIRGSDGCPKPVFA 87

Query: 260 KIAQKILRNI--------PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                  + +           PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 88  FHQCNFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 141

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 142 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 201

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 202 QIRDLER----GVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 257

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D  +I     E  A      I  V +   +
Sbjct: 258 VDQIRPDRQTLMWSATWPKEVRQLAEDFLHDYVQINVGNLELSANHNILQIVDVCMESEK 317

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 318 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 369

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 370 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 428

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 429 NKGTAYTFFTPGNLKQARELIKVLEEAN 456


>gi|311255076|ref|XP_003126098.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Sus
           scrofa]
          Length = 801

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 157/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 188 RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 242

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 243 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 296

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 297 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 356

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 357 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 412

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 413 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 472

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 473 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 524

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 525 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 583

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 584 NKGTAYTFFTPGNLKQARELIKVLEEAN 611


>gi|326911972|ref|XP_003202329.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
           [Meleagris gallopavo]
          Length = 645

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 158/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF--KKEIGIPINVEG 259
             + +++   P+  K+F    P   RL        ++  L  +K+   +   G P  V  
Sbjct: 27  RKKKWDLNELPKFEKNFYVEHPEVARL-----TPYEVEELRRKKEITIRGMEGCPKPVFA 81

Query: 260 KIAQKILRNI-------PF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                  + +        F  PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 82  FHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 135

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 136 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 195

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 196 QIRDLER----GVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 251

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D  +I     E  A      I  V +   +
Sbjct: 252 VDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEK 311

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 312 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 363

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 364 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 422

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 423 NKGTAYTFFTPGNLKQARELIKVLEEAN 450


>gi|28872121|ref|NP_794740.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|301384383|ref|ZP_07232801.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062325|ref|ZP_07253866.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           K40]
 gi|302132329|ref|ZP_07258319.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28855375|gb|AAO58435.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331014545|gb|EGH94601.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 459

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 92/456 (20%), Positives = 184/456 (40%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ ++  T  Q  ++  IL+ M        I Q   GSGKT    I +   +     G
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMD------LIAQAKTGSGKTAAFGIGLLNPINPRFFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA Q  + I++  +    I V  + G +    +  +LE      AHII+
Sbjct: 73  CQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH----GAHIIV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q  ++   L+L  ++        + L +    +   ++  T     +TL+ ++ 
Sbjct: 129 GTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQT-PQRRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
             + I +++ K       +TV +     D  IE++   +S  ++   +   +   +    
Sbjct: 188 YPVGIKQLSSKFMRDP--QTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSC 245

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + V E  + L     S++ + HG +   D++ V+  F N +  +L+AT V   
Sbjct: 246 VAFCFTKQQVQEVVDHLTAKGMSAVGL-HGDLEQRDRDQVLAMFANRSTSVLVATDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK- 612
           G+D+    +++           +H++ GR GR  E    + L  P  S+ +     + K 
Sbjct: 305 GLDIDALDMVLNVELARDSEIHIHRV-GRTGRAGETGIAVSLVAPSESQRARAIEELQKA 363

Query: 613 ----NTEDGFLI--------AEEDL-------KQRKEGEILG--IKQSGMPKFLIAQPEL 651
                  D   I        A   L        + + G+ILG    ++G+    + +  +
Sbjct: 364 PLNWQQYDSLSIKEGGKLLPAMTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAI 423

Query: 652 HD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            D  + + + R  AK  L +  +   ++G+S+R+ +
Sbjct: 424 FDFQAYVAVERSMAKQALERLNN-GKIKGKSLRVRI 458


>gi|66043783|ref|YP_233624.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254490|gb|AAY35586.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 473

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 92/456 (20%), Positives = 183/456 (40%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ ++  T  Q  ++  IL+ M        I Q   GSGKT    I +   +     G
Sbjct: 33  LESLGYAEMTPIQAQSLPVILKGMD------LIAQAKTGSGKTAAFGIGLLNPINPRFFG 86

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA Q  + I++  +    I V  + G +    +  +LE      AHII+
Sbjct: 87  CQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH----GAHIIV 142

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q  ++   L+L  ++        + L +        ++  T     +TL+ ++ 
Sbjct: 143 GTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQT-PQRRQTLLFSAT 201

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
             + I +++ K       +TV +     D  IE++   +S  ++   +   +   +    
Sbjct: 202 YPVGIKQLSSKFMRDP--QTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSC 259

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + V E  + L     S++ + HG +   D++ V+  F N +  +L+AT V   
Sbjct: 260 VAFCFTKQQVQEVVDHLTAKGMSAVGL-HGDLEQRDRDQVLAMFANRSTSVLVATDVAAR 318

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+    ++I           +H++ GR GR  E    + L  P  S+ +     + K 
Sbjct: 319 GLDIDALDMVINVELARDSEIHIHRV-GRTGRAGEKGIAVSLVAPSESQRARAIEELQKA 377

Query: 614 TEDG-------------FLIAEEDL-------KQRKEGEILG--IKQSGMPKFLIAQPEL 651
             +               L A   L        + + G+ILG    ++G+    + +  +
Sbjct: 378 PLNWQQYDRLSIKEGGKLLPAMTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAI 437

Query: 652 HD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            D  + + + R  AK  L +  +   ++G+S+R+ +
Sbjct: 438 FDFQAYVAVERSMAKQALERLNN-GKIKGKSLRVRI 472


>gi|74210167|dbj|BAE21355.1| unnamed protein product [Mus musculus]
          Length = 690

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 158/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 127 PKFEKNFYQEHPDLARRTAQEVDTY--------RRSKEITVRGHNCPKPVLNFYEANFPA 178

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 179 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 232

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 233 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 291

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 292 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 348

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 349 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 408

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 409 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 460

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 461 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 519

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 520 FTPNNIKQVSDLISVLREAN 539


>gi|145629319|ref|ZP_01785118.1| transcription-repair coupling factor [Haemophilus influenzae
           22.1-21]
 gi|144978822|gb|EDJ88545.1| transcription-repair coupling factor [Haemophilus influenzae
           22.1-21]
          Length = 765

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 103/199 (51%), Gaps = 2/199 (1%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS 272
            K  +  W    ++       +A ++  +  +++ K   G     + +  Q+     PF 
Sbjct: 545 HKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAK--KGFAFKYDREEFQQFSATFPFE 602

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
            T  QE AI  ++ DM Q   M R++ GDVG GKT VA+ A   AV    Q  ++ P  +
Sbjct: 603 ETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTL 662

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           LAQQHYE  K    N  + VE+++       +++ LE +A G+  I+IGTH L Q  +++
Sbjct: 663 LAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKF 722

Query: 393 YKLILVIVDEQHRFGVQQR 411
             L L+I+DE+HRFGV Q+
Sbjct: 723 NDLGLLIIDEEHRFGVGQK 741



 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 61/173 (35%), Gaps = 11/173 (6%)

Query: 408 VQQRLKLTQKATAPHV---LLMTAT-PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
             QR      A           +AT P   T       +  IS + +  A  + +   + 
Sbjct: 574 YAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVCGDV- 632

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
              + +  +    + +   K+   + P          +   E F     +   ++ ++  
Sbjct: 633 GFGKTEVAMRAAFLAVMNHKQVAVLVPTT-----LLAQQHYENFKDRFANLPVNVEVLSR 687

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATT-VIEVGIDVVDASIIIIENAEHFGLAQ 575
             +  +++ ++++   G   +LI T  +I+  +   D  ++II+    FG+ Q
Sbjct: 688 FKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQ 740


>gi|213586753|ref|ZP_03368579.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 200

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 81/184 (44%), Positives = 117/184 (63%), Gaps = 1/184 (0%)

Query: 493 EEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           EE      ++    +  L       +I ++HGRM   +K++VM +FK G   LL+ATTVI
Sbjct: 1   EESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGELHLLVATTVI 60

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           EVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY  PLSK +  RL VL
Sbjct: 61  EVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKSPLSKTAQKRLQVL 120

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           +++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      +++   ++ A+HI  + P
Sbjct: 121 RDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRIARHIHERYP 180

Query: 672 DLTS 675
               
Sbjct: 181 QQAQ 184


>gi|254166522|ref|ZP_04873376.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|289596178|ref|YP_003482874.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|197624132|gb|EDY36693.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|289533965|gb|ADD08312.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 451

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 134/352 (38%), Gaps = 33/352 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
            PT+ QE AI   ++          I+Q   GSGKTL  LI +   + +G +A+++ P  
Sbjct: 26  EPTEVQEKAIPLAIKGRD------LIVQSKTGSGKTLAFLIPIFENLNSGLEAIVLVPTR 79

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
            LAQQ     +   +       +I G  P   +   L+      A ++IGT     D ++
Sbjct: 80  ELAQQVERVARSIGKAHGKRTVVIYGGAPMERQIAGLK-----GASMVIGTPGRVMDLMR 134

Query: 392 YYKLILVIV--------DEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRT--LVLTS 439
              L L  +        D     G    +K   + T     ++L +AT  P    L    
Sbjct: 135 RGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQMMLFSATMPPEIISLARRY 194

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           + + +   ++E     + +    + +  I+++ +   +++SE  K    C          
Sbjct: 195 MKNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLISERGKYLIFCNT-------- 246

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   +    + + +      +HG M    +   MD+FK G   +L++T V   GIDV  
Sbjct: 247 -RRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILVSTDVAARGIDVHG 305

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            + ++  +   +    +H++ GR GR +     I        +        +
Sbjct: 306 ITHVVNYDVPLYPKDYVHRI-GRTGRMDAHGKAITFVTREDKEYFRRIEDFI 356


>gi|62088770|dbj|BAD92832.1| DEAD box polypeptide 17 isoform p82 variant [Homo sapiens]
          Length = 737

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 157/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 120 RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 174

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 175 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 228

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 229 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 288

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 289 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 344

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 345 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 404

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 405 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 456

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 457 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 515

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 516 NKGTAYTFFTPGNLKQARELIKVLEEAN 543


>gi|1169228|sp|P46942|DB10_NICSY RecName: Full=ATP-dependent RNA helicase-like protein DB10
 gi|563986|dbj|BAA03763.1| RNA helicase like protein DB10 [Nicotiana sylvestris]
          Length = 607

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 146/385 (37%), Gaps = 48/385 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +PT  Q  +    LQ          +     GSGKTL  L+     ++        G   
Sbjct: 167 APTPIQAQSWPIALQGRD------IVAIAKTGSGKTLGYLMPAFIHLQQRRKNPQLGPTI 220

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q      K+ ++++I    + G  P+  + + L R       I++ T  
Sbjct: 221 LVLSPTRELATQIQAEAVKFGKSSRISCTCLYGGAPKGPQLRELSR----GVDIVVATPG 276

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT 434
              D ++  +        L+L   D     G   Q R  + +       L+ TAT  P+ 
Sbjct: 277 RLNDILEMRRVSLGQVSYLVLDEADRMLDMGFEPQIRKIVKEVPVQRQTLMYTAT-WPKG 335

Query: 435 L------VLTSLGDIDISKITEKPAG--RKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +      +L +   ++I  + E  A         V++P+ +   V E++      G K  
Sbjct: 336 VRKIAADLLVNSVQVNIGNVDELVANKSITQHIEVVLPMEKQRRV-EQILRSKEPGSKII 394

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C        S  +   +   +L  +F +  A IHG  S  +++ V+  F+ G   +L+
Sbjct: 395 IFC--------STKKMCDQLSRNLTRNFGA--AAIHGDKSQGERDYVLSQFRAGRSPVLV 444

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ D  ++I  +        +H++ GR GR          +    SK++  
Sbjct: 445 ATDVAARGLDIKDIRVVINYDFPTGIEDYVHRI-GRTGRAGASGLAYTFFSDQDSKHALD 503

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEG 631
            + VL+           D+  R  G
Sbjct: 504 LVKVLEGANQCVPTELRDMASRGGG 528


>gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
           MLS10]
          Length = 528

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 74/364 (20%), Positives = 141/364 (38%), Gaps = 24/364 (6%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K   + ++ + F  P+  QE  I  IL+          I Q   G+GKT    I +   
Sbjct: 10  SKSLMRAIKEMGFEAPSPIQEKVIPTILEG------NDLIGQAQTGTGKTAAFGIPILEK 63

Query: 318 VEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           ++     QA+I+ P   LA Q    I+K ++  ++    + G      + K L+R     
Sbjct: 64  LKRTKNVQAIILTPTRELAIQVAGEIQKLSKFQKVQTLPVYGGQSIGQQIKQLKR----G 119

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             I++GT     D +    L L  +         + L +        ++ +++    +TL
Sbjct: 120 VDIVVGTPGRVLDHVNRKTLDLSKIHTFVLDEADEMLDMGFIEDIEKIIQVSSE-ERQTL 178

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE- 494
           + ++     I K++ K     P +  I         I ++   + E  K   +C  I+  
Sbjct: 179 LFSATMPPPIRKLSNKYMN-SPEQVTISKSEVTAPSINQVYYKVLEKNKLDSLCRLIDSE 237

Query: 495 ------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       + V E   +L          +HG ++   ++SVM  F++ +   LIAT
Sbjct: 238 NTDLGIIFCRTKKGVSELAEALQARGY-RADGLHGDLTQSQRDSVMKKFRDSSIDFLIAT 296

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV + + ++  +      + +H++ GR GR       + L  P   K+  +  
Sbjct: 297 DVAARGIDVQNVTHVVNYDIPQDPESYVHRI-GRTGRAGREGIALTLVTPREMKHLRSIE 355

Query: 609 SVLK 612
           + +K
Sbjct: 356 NEIK 359


>gi|260802690|ref|XP_002596225.1| hypothetical protein BRAFLDRAFT_276047 [Branchiostoma floridae]
 gi|229281479|gb|EEN52237.1| hypothetical protein BRAFLDRAFT_276047 [Branchiostoma floridae]
          Length = 924

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 94/431 (21%), Positives = 178/431 (41%), Gaps = 46/431 (10%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN-VEGKIAQKILRNI-- 269
              KDF    P  ++L+ DE+ A +  +  +R + K      ++ V+  +++K+L  +  
Sbjct: 195 PFRKDFYVEVPELQKLSEDEVKAMRAEMEDVRVKGKGCPKPVLHWVQSGVSKKVLACLKK 254

Query: 270 -PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------- 320
             F  PT  Q  AI  I+        M+ I     GSGKTL  LI M   +         
Sbjct: 255 HGFEKPTPIQAQAIPVIM----SGRDMIGI--AKTGSGKTLAFLIPMFRHILDQRPLEDT 308

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G   VIM P   LA Q  +  KK+T++  + V  + G    + +   L+R     A II
Sbjct: 309 EGPIGVIMTPTRELALQITKECKKFTRHMNLKVVCVYGGTGISEQIAELKR----GAEII 364

Query: 380 IGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           I T     D +           +   +++DE  R                  ++ +  P 
Sbjct: 365 ICTPGRMIDMLAANNGRVTNLRRCTYLVLDEADRMFDMGFEPQVMH------IVNSVRPD 418

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            +T++ ++    ++  +  K   +KPI+  +   + +   +E+  +VL E +K + +   
Sbjct: 419 RQTVMFSATFPRNMEALARK-VLQKPIEVQVGGRSVVCSDVEQHVIVLEEEQKFFKLLEL 477

Query: 492 IEEKKESN----FRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +   +E      F    E  ++L +       S   +HG +   D++S+++ FK+G  +L
Sbjct: 478 LGNYQEKGSVLVFVERQEVADTLLKDLLKAAYSCLSLHGGIDQYDRDSIINDFKSGNIRL 537

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT+V   G+DV    ++I  +  +     +H++ GR GR                + +
Sbjct: 538 LVATSVAARGLDVKQLILVINYDCPNHYEDYVHRV-GRTGRAGNKGYAYTFITEDQGRYA 596

Query: 605 YTRLSVLKNTE 615
              +  L+ +E
Sbjct: 597 GDVIKALELSE 607


>gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
 gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
          Length = 508

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 136/354 (38%), Gaps = 26/354 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +PT  Q  AI  +L+          I     G+GKT    + +   +  G        + 
Sbjct: 32  TPTPIQTQAIPPVLEGRDV------IGLAQTGTGKTAAFTLPILHRLAPGKPAGPKKARV 85

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I++P   L+ Q  + +K   +   +   ++ G +    + K L         ++I T  
Sbjct: 86  LILSPTRELSAQIAKTVKDLGRKLSLRSAVVVGGVSIRPQIKTLAS----GVDVLIATPG 141

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D I+   + L  ++        Q L +        +L MT     +TL+ ++    +
Sbjct: 142 RLMDLIEQRAVSLNEIEVVVLDEADQMLDIGFMPAIKRILAMTPAT-RQTLLFSATMPKE 200

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------ES 498
           I +++++     PI+  +IP  +  + +E   + +  G K   +   I ++K       +
Sbjct: 201 IRQLSDRHLT-DPIEVSVIPAKKTADRVEHSVMHMQPGAKMGALASLIRDRKGERVIVFT 259

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +   ++     E    + A IHG  S   +E  +  F+ GT  +LIAT +   GIDV 
Sbjct: 260 RTKRGADKAAKRLEGDGINAAAIHGNKSQGQRERALAGFRAGTVPVLIATDIAARGIDVP 319

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             S+++     +     +H++ GR  R     + +    P           +LK
Sbjct: 320 GVSLVVNYELPNVPEVYVHRI-GRTARAGAEGTAVTFCAPDERSLLRDIEKMLK 372


>gi|302189857|ref|ZP_07266530.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. syringae
           642]
          Length = 459

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 92/456 (20%), Positives = 183/456 (40%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ ++  T  Q  ++  IL+ M        I Q   GSGKT    I +   +     G
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMD------LIAQAKTGSGKTAAFGIGLLNPINPRFFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA Q  + I++  +    I V  + G +    +  +LE      AHII+
Sbjct: 73  CQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH----GAHIIV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q  ++   L+L  ++        + L +        ++  T     +TL+ ++ 
Sbjct: 129 GTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQT-PQRRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
             + I +++ K       +TV +     D  IE++   +S  ++   +   +   +    
Sbjct: 188 YPVGIKQLSSKFMRDP--QTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSC 245

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + V E  + L     S++ + HG +   D++ V+  F N +  +L+AT V   
Sbjct: 246 VAFCFTKQQVQEVVDHLTAKGMSAVGL-HGDLEQRDRDQVLAMFANRSTSVLVATDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+    ++I           +H++ GR GR  E    + L  P  S+ +     + K 
Sbjct: 305 GLDIDALDMVINVELARDSEIHIHRV-GRTGRAGEKGIAVSLVAPSESQRARAIEELQKA 363

Query: 614 TEDG-------------FLIAEEDL-------KQRKEGEILG--IKQSGMPKFLIAQPEL 651
             +               L A   L        + + G+ILG    ++G+    + +  +
Sbjct: 364 PLNWQQYDRLSIKEGGKLLPAMTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAI 423

Query: 652 HD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            D  + + + R  AK  L +  +   ++G+S+R+ +
Sbjct: 424 FDFQAYVAVERSMAKQALERLNN-GKIKGKSLRVRI 458


>gi|118082784|ref|XP_416260.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
           [Gallus gallus]
          Length = 655

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 158/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF--KKEIGIPINVEG 259
             + +++   P+  K+F    P   RL        ++  L  +K+   +   G P  V  
Sbjct: 37  RKKKWDLNELPKFEKNFYVEHPEVARL-----TPYEVEELRRKKEITIRGMEGCPKPVFA 91

Query: 260 KIAQKILRNI-------PF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                  + +        F  PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 92  FHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 145

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 146 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 205

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 206 QIRDLER----GVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 261

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D  +I     E  A      I  V +   +
Sbjct: 262 VDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEK 321

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 322 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 373

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 374 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 432

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 433 NKGTAYTFFTPGNLKQARELIKVLEEAN 460


>gi|298484971|ref|ZP_07003069.1| ATP-independent RNA helicase DbpA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160525|gb|EFI01548.1| ATP-independent RNA helicase DbpA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 473

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 91/456 (19%), Positives = 181/456 (39%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ ++  T  Q  ++  IL+ M        I Q   GSGKT    I +   +     G
Sbjct: 33  LESLGYAEMTPIQAQSLPVILKGMD------LIAQAKTGSGKTAAFGIGLLNPINPRFFG 86

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA Q  + I++  +    I V  + G +    +  +LE      AHII+
Sbjct: 87  CQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH----GAHIIV 142

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q  ++   L+L  ++        + L +        ++  T     +TL+ ++ 
Sbjct: 143 GTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQT-PQRRQTLLFSAT 201

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
             + I +++ K       +TV +     D  IE++   +S  ++   +   +   +    
Sbjct: 202 YPVGIKQLSSKFMRDP--QTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLGHFRPASC 259

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + V E  + L     S++ + HG +   D++ V+  F N +  +L+AT V   
Sbjct: 260 VAFCFTKQQVQEVVDHLTAKGMSAVGL-HGDLEQRDRDQVLAMFANRSTSVLVATDVAAR 318

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+    ++I           +H++ GR GR  E    + L  P  S+ +     + K 
Sbjct: 319 GLDIDALDMVINVELARDSEIHIHRV-GRTGRAGEKGIAVSLVAPSESQRARAIEELQKA 377

Query: 614 --------------------TEDGFLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPEL 651
                               T     I      + + G+ILG    ++G+    + +  +
Sbjct: 378 PLNWQQYDQLSVKEGGKLLPTMTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAI 437

Query: 652 HD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            D  + + + R  AK  L +  +   ++G+S+R+ +
Sbjct: 438 FDFQAYVAVERSMAKQALERLNN-GKIKGKSLRVRI 472


>gi|254168903|ref|ZP_04875743.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|197622167|gb|EDY34742.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 451

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 134/352 (38%), Gaps = 33/352 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
            PT+ QE AI   ++          I+Q   GSGKTL  LI +   + +G +A+++ P  
Sbjct: 26  EPTEVQEKAIPLAIKGRD------LIVQSKTGSGKTLAFLIPIFENLNSGLEAIVLVPTR 79

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
            LAQQ     +   +       +I G  P   +   L+      A ++IGT     D ++
Sbjct: 80  ELAQQVERVARSIGKAHGKRTVVIYGGAPMERQIAGLK-----GASMVIGTPGRVMDLMR 134

Query: 392 YYKLILVIV--------DEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRT--LVLTS 439
              L L  +        D     G    +K   + T     ++L +AT  P    L    
Sbjct: 135 RGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQMMLFSATMPPEIISLARRY 194

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           + + +   ++E     + +    + +  I+++ +   +++SE  K    C          
Sbjct: 195 MKNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLISERGKYLIFCNT-------- 246

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   +    + + +      +HG M    +   MD+FK G   +L++T V   GIDV  
Sbjct: 247 -RRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILVSTDVAARGIDVHG 305

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            + ++  +   +    +H++ GR GR +     I        +        +
Sbjct: 306 ITHVVNYDVPLYPKDYVHRI-GRTGRMDAHGKAITFVTREDKEYFRRIEDFI 356


>gi|228989414|ref|ZP_04149403.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
           DSM 12442]
 gi|228770361|gb|EEM18936.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
           DSM 12442]
          Length = 528

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 161/433 (37%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTHKESV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G+ ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIEQT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMPKFLIAQPEL-HDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +    +A  +   + +LE          A
Sbjct: 359 TKRKIDRMNAPTLDEALEGQQRLIAEKLQSTIESDNLAYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|228995609|ref|ZP_04155275.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
           Rock3-17]
 gi|228764181|gb|EEM13062.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
           Rock3-17]
          Length = 536

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 161/433 (37%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTHKESV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G+ ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIEQT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMPKFLIAQPEL-HDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +    +A  +   + +LE          A
Sbjct: 359 TKRKIDRMNAPTLDEALEGQQRLIAEKLQSTIESDNLAYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|146340507|ref|YP_001205555.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
 gi|146193313|emb|CAL77329.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
          Length = 476

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/365 (21%), Positives = 140/365 (38%), Gaps = 42/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI  +L       R   +     G+GKT   ++ M   +E G       + +
Sbjct: 23  TPTPIQEQAIPHVLA------RRDVLGIAQTGTGKTAAFVLPMLTILEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   +Y    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDAKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKL-----ILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--R 433
             D  +   L      L+++DE  R      +   ++           L  TAT  P  R
Sbjct: 133 LLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPPEIR 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI----DEVIERLKVVLSEGKKAYWIC 489
            +    L +    ++++       +  + +P  R      EV+ RL     + K A   C
Sbjct: 193 RITDAFLHNPQKVEVSKPATTAVTVTQLQVPSGREAHQKREVLRRLLREAKDLKNAIIFC 252

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         R V     SL +H   S+  +HG M    + + +D F+ G   LL+A+ 
Sbjct: 253 NR--------KRDVAIVHKSLQKHG-FSVGALHGDMDQSARMAALDQFRKGELPLLVASD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ + S +   +  H     +H++ GR GR     + I +  PP  K+      
Sbjct: 304 VAARGLDIPEVSHVFNFDVPHHSDDYVHRI-GRTGRAGRTGTAISIVSPPDQKSVAAIEK 362

Query: 610 VLKNT 614
           ++  +
Sbjct: 363 LIGQS 367


>gi|149635102|ref|XP_001510775.1| PREDICTED: similar to DDX5 protein [Ornithorhynchus anatinus]
          Length = 682

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 92/440 (20%), Positives = 159/440 (36%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    I      N P 
Sbjct: 120 PKFEKNFYQEHPDLARRTAQEVDTY--------RRSKEVTVRGHNCPKPILNFYEANFPA 171

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 172 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 225

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y++  ++    I G  P+  + + LER 
Sbjct: 226 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLER- 284

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 285 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 341

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 342 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 401

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 402 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 453

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 454 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 512

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 513 FTPNNIKQVSDLISVLREAN 532


>gi|323701905|ref|ZP_08113575.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533209|gb|EGB23078.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
           DSM 574]
          Length = 532

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/337 (22%), Positives = 135/337 (40%), Gaps = 24/337 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT  Q+ A+  +L           I Q   G+GKT    I + A +   + G QA+I+ 
Sbjct: 30  EPTPIQQLAVPLVLAGHD------IIGQAQTGTGKTAAFGIPLVARLNFRKRGVQAIIIT 83

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I K  +  +  V  I G      + ++L +      H+++GT     D
Sbjct: 84  PTRELAIQVGEEINKIGRYRRARVLPIYGGQSIERQIRSLRQ----GVHVVVGTPGRLLD 139

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++   L L  V         + L +        +L  T  P  +TL+ ++    +IS++
Sbjct: 140 HLRRQTLKLDQVSMVVLDEADEMLDMGFIDDIEEILRHT-PPERQTLLFSATMPEEISRL 198

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-------ESNFR 501
             +        T +   N     IE++     E  K   +C  ++  +           R
Sbjct: 199 ARQYMTDPKFVT-VSKANITAPSIEQIYYEAPEKHKLEALCRILDTTEITQGIVFCRTKR 257

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            V E    L     +++++ HG +S   + +VM  F++G  +LL+AT V   G+D+   S
Sbjct: 258 GVDELVAGLQARGYTAVSL-HGDLSQQQRNTVMRQFRSGEVELLVATDVAARGLDIEGVS 316

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +I  +        +H++ GR GR       I +  P
Sbjct: 317 HVINYDIPQDPEFYVHRI-GRTGRAGRSGVAITIITP 352


>gi|224095173|ref|XP_002195734.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Taeniopygia
           guttata]
          Length = 842

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 158/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF--KKEIGIPINVEG 259
             + +++   P+  K+F    P   RL        ++  L  +K+   +   G P  V  
Sbjct: 225 RKKKWDLNELPKFEKNFYVEHPEVARL-----TPYEVEELRRKKEITIRGMEGCPKPVFA 279

Query: 260 KIAQKILRNI-------PF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                  + +        F  PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 280 FHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 333

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 334 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 393

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 394 QIRDLER----GVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 449

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D  +I     E  A      I  V +   +
Sbjct: 450 VDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEK 509

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 510 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 561

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 562 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 620

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 621 NKGTAYTFFTPGNLKQARELIKVLEEAN 648


>gi|134046209|ref|YP_001097694.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis C5]
 gi|132663834|gb|ABO35480.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
           C5]
          Length = 541

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 89/444 (20%), Positives = 159/444 (35%), Gaps = 69/444 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +PT  QE AI  +++      +   + Q   G+GKT    I +   ++      QA+I+A
Sbjct: 24  TPTPIQEQAIPILIEG-----KRDIVGQAQTGTGKTAAFGIPILETIDESSRNTQALILA 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I     + ++ V  + G      + + L R       I++GT     D
Sbjct: 79  PTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRELRR----GVQIVVGTPGRILD 134

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQR--LKLTQKATAPHVLLMTATPIPRTLVLT 438
            I    + L  V        DE    G        L   +T   +LL +AT     + L 
Sbjct: 135 HISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRMLLFSATLPDSIMKLA 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
                +   I  K        T            ++    +    K   +   I+ +KE 
Sbjct: 195 KNYMREYDIIKVKRQQLTTTLT------------DQSFYEIHSRDKFELLSRIIDLEKEF 242

Query: 498 -----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   ++ V+  +S       +   +HG M+   +E  +D FK     +L+AT V  
Sbjct: 243 YGLIFCKTKADVDEVSSRLNEKGYAAEGLHGDMTQAQREKTLDKFKGRKINVLVATDVAA 302

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+ D + ++  +      + +H++ GR GR  +    +    P      +  +  + 
Sbjct: 303 RGIDINDLTHVVNYDIPQNPESYVHRI-GRTGRAGKQGYAVTFVEPSE-FRKFKYIQKIA 360

Query: 613 NTEDGFLIAEEDLKQRKEG-----EILGIKQ----SGMPKFLIAQPELHDSLLEIARKDA 663
            T           + RKE      +I+G K+    SG+ + L +               A
Sbjct: 361 KT-----------EIRKEEVPDVKDIIGAKKRKIVSGIKEVLESGKYNDCE-----NMAA 404

Query: 664 KHILTQDPD--LTSVRGQSIRILL 685
             +   DP   L++V   +++  L
Sbjct: 405 DLLEDADPQEVLSAVLKYALKDEL 428


>gi|297828586|ref|XP_002882175.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328015|gb|EFH58434.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 625

 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 82/405 (20%), Positives = 155/405 (38%), Gaps = 49/405 (12%)

Query: 254 PINVEGKIAQKILRNI--PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
                G  ++ +   +   FS PT  Q  +    +Q          +     GSGKTL  
Sbjct: 165 SFEATGFPSELLREVLNAGFSAPTPIQAQSWPIAMQGRD------IVAIAKTGSGKTLGY 218

Query: 311 LIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           LI     ++        G   ++++P   LA Q  E   K+ ++++I    + G  P+  
Sbjct: 219 LIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGP 278

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLK 413
           + + LER     A I++ T     D ++  +        L+L   D     G   Q R  
Sbjct: 279 QLRDLER----GADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKI 334

Query: 414 LTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEKPAGRK-PIKTVIIPIN 466
           + +  T    L+ TAT  P+ +      +L +   ++I  + E  A +       ++   
Sbjct: 335 VKEIPTKRQTLMYTAT-WPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPM 393

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
                +E++      G K    C        S  R   +   +L   F +  A IHG  S
Sbjct: 394 EKQRRLEQILRSQEPGSKVIIFC--------STKRMCDQLTRNLTRQFGA--AAIHGDKS 443

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             ++++V++ F++G   +L+AT V   G+DV D   ++  +  +     +H++ GR GR 
Sbjct: 444 QPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRI-GRTGRA 502

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
                    +    SK++   + +L+           ++  R  G
Sbjct: 503 GATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMATRGGG 547


>gi|297807481|ref|XP_002871624.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317461|gb|EFH47883.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 713

 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 83/473 (17%), Positives = 173/473 (36%), Gaps = 60/473 (12%)

Query: 189 IEKDLLQK-KSFPSIAEAFNIIHNPRKAKDFEWTSPARER--LAYDELLAGQI----ALL 241
           +  +LL++  +F   A +F     P         +  R    L + +++   +      L
Sbjct: 170 LPPELLRESHNFMPYALSFV----PGAIFALGGANVVRYATSLGFLQIIWSALFGGPNTL 225

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
                        +   G++           P+  Q  +    +Q+         +    
Sbjct: 226 RYPPAAGFNSYPVLPANGRMIAGFSA-----PSPIQAQSWPIAMQNRD------IVAIAK 274

Query: 302 VGSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  LI     ++        G   ++++P   LA Q      K+ ++++I    
Sbjct: 275 TGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCAC 334

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRF 406
           + G  P+  + K +ER       I++ T     D ++  +        L+L   D     
Sbjct: 335 LYGGAPKGPQLKEIER----GVDIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDM 390

Query: 407 GVQQRLKLT--QKATAPHVLLMTATPIPRTL-----VLTSLGDIDISKITEKPAGRKPIK 459
           G + +++    +  T    L+ TAT           +L +   ++I  + E  A +   +
Sbjct: 391 GFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQ 450

Query: 460 TV-IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
           T+ ++        +E++      G K    C        S  R   +   +L   F +  
Sbjct: 451 TIEVLAPMEKHSRLEQILRSQEPGSKIIIFC--------STKRMCDQLARNLTRTFGA-- 500

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
           A IHG  S  +++ V++ F++G   +L+AT V   G+DV D  +++  +  +     +H+
Sbjct: 501 AAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHR 560

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           + GR GR          +    +K++   + +L+           ++  R  G
Sbjct: 561 I-GRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMATRGGG 612


>gi|330886294|gb|EGH20195.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. mori str.
           301020]
          Length = 459

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 93/457 (20%), Positives = 182/457 (39%), Gaps = 54/457 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ ++  T  Q  ++  IL+ M        I Q   GSGKT    I +   +     G
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMD------LIAQAKTGSGKTAAFGIGLLNPINPRFFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA Q  + I++  +    I V  + G +    +  +LE      AHII+
Sbjct: 73  CQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH----GAHIIV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTS 439
           GT    Q  ++   L+L  ++        + L +        ++    TP  R TL+ ++
Sbjct: 129 GTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADII--KQTPQRRQTLLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
              + I +++ K       +TV +     D  IE++   +S  ++   +   +   +   
Sbjct: 187 TYPVGIKQLSSKFMRDP--QTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLGHFRPAS 244

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   + V E  + L     S++ + HG +   D++ V+  F N +  +L+AT V  
Sbjct: 245 CVAFCFTKQQVQEVVDHLTAKGMSAVGL-HGDLEQRDRDQVLAMFANRSTSVLVATDVAA 303

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+    ++I           +H++ GR GR  E    + L  P  S+ +     + K
Sbjct: 304 RGLDIDALDMVINVELARDSEIHIHRV-GRTGRAGEKGIAVSLVAPSESQRARAIEELQK 362

Query: 613 N--------------------TEDGFLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPE 650
                                T     I      + + G+ILG    ++G+    + +  
Sbjct: 363 APLNWQQYDQLSIKEGGKLLPTMTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIA 422

Query: 651 LHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           + D  + + + R  AK  L +  +   ++G+S+R+ +
Sbjct: 423 IFDFQAYVAVERSMAKQALERLNN-GKIKGKSLRVRI 458


>gi|254491400|ref|ZP_05104579.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010]
 gi|224462878|gb|EEF79148.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010]
          Length = 460

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 173/458 (37%), Gaps = 62/458 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ +   T  Q  ++ +IL+          I Q   GSGKT    I +   +     G
Sbjct: 19  LDSLGYESMTAIQAQSLPEILKG------NDLIAQAKTGSGKTAAFGIGLLQKLNPRFFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA+Q  + I+K  +    I + ++ G  P   +  +LE      AHI++
Sbjct: 73  AQALVLCPTRELAEQVGKEIRKLARFMPNIKLVMLCGGKPIGPQIGSLEH----GAHIVV 128

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT    QD ++   L L      ++DE  R        L          ++  TP  R  
Sbjct: 129 GTPGRVQDHLRKNTLKLDGLTTLVLDEADRM-------LDMGFADAMQAIIGQTPKNRQT 181

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           +L S    D  +   +   R P+ TV +      EVI+++   +S+  +   +       
Sbjct: 182 LLFSATYPDTIQHMSRQIQRNPV-TVTVEAEHNKEVIQQVFYEVSKHDRNTALLSLFAHY 240

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        + +   +       +       IHG +   D++ V+  F N +C +L+AT 
Sbjct: 241 QPETCVVFCHTKKQCDDVADFLNNEQIDALAIHGDLDQRDRDQVLVRFANNSCPVLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+    ++I           +H++ GR GR  +    + +  P  +        
Sbjct: 301 VAARGLDIKALQMVINYELPRDPEVYVHRI-GRTGRAGQTGLAMSIVTPNETPRILAIEE 359

Query: 610 -----------VLKNTEDGFLI----------AEEDLKQRKEGEILG--IKQSGMPKFLI 646
                       L N    F +          A    K R  G+ILG     +G+    I
Sbjct: 360 YSNRPCPCDELTLLNNNVDFSLQAPMATIQIDAGRKGKLR-PGDILGALTGDAGLKGSQI 418

Query: 647 AQPELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIR 682
            + ++ D  S + I +   +  L+       ++G+++R
Sbjct: 419 GKIDIFDMSSYVAIEKSAIRQALSYFSQ-GKIKGRNVR 455


>gi|198453003|ref|XP_002137583.1| GA27302 [Drosophila pseudoobscura pseudoobscura]
 gi|198132172|gb|EDY68141.1| GA27302 [Drosophila pseudoobscura pseudoobscura]
          Length = 800

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/414 (18%), Positives = 143/414 (34%), Gaps = 55/414 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ AI  I+           +     GSGKT   L+ +   +   G         
Sbjct: 313 KPTPVQKHAIPIIISGRD------LMACAQTGSGKTAAFLVPILNQMYEHGMSAPPQNNR 366

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                      +++AP   LA Q +E  KK+   +++   ++ G    + + + L+R   
Sbjct: 367 QYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDR--- 423

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+I+ T    +D I   K+ L  +     DE  R          Q       L M  
Sbjct: 424 -GCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEP--QIRRIVEQLNMPP 480

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++     I ++         I   +  +    E I +  + + E  K  ++
Sbjct: 481 TGQRQTLMFSATFPKQIQELASDFL-SNYIFLAVGRVGSTSENITQTILWVYEQDKRSYL 539

Query: 489 CPQIEEKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              +   ++                +   +         +  +  IHG  +  ++E  + 
Sbjct: 540 LDLLSSIRDGPEYSKDSLTLIFVETKKGADSLEEFLYQCSHPVTSIHGDRTQKEREEALR 599

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G C +L+AT V   G+D+     +I  +        +H++ GR GR   +      
Sbjct: 600 CFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRI-GRTGRMGNLGVATSF 658

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDL--KQRKEGEILGIKQSGMPKFLIA 647
           ++          L +L  T+       EDL    R  G   G K+ G P     
Sbjct: 659 FNEKNRNICSDLLELLIETKQEIPNFLEDLLSSDRGHG---GAKRRGGPGARYG 709


>gi|120538559|gb|AAI29874.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
          Length = 615

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 160/432 (37%), Gaps = 47/432 (10%)

Query: 212 PRKAKDFEWTSPAR-ERLAYDELLAGQIALLLMRKQFKKEIGIPI---NVEGKIAQKILR 267
           P+  K+F    P    R A +     +   + +R     +  +     N    +   I R
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVDTYRRSKEITVRGHNCPKPVLKFYEANFPANVMDVIAR 111

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------- 319
                PT  Q       L  +     M+ + Q   GSGKTL  L+     +         
Sbjct: 112 QNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHINHQPFLERG 165

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER       I 
Sbjct: 166 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEIC 221

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTAT 429
           I T     D ++  K        L+L   D     G + +++    Q       L+ +AT
Sbjct: 222 IATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 281

Query: 430 PIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGK 483
                R L    L D     I   E  A      I  V   + + +++I  ++ ++SE +
Sbjct: 282 WPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKE 341

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  + +       R   E    +      ++ I HG  S  +++ V++ FK+G   
Sbjct: 342 NKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLNEFKHGKAP 393

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    + P   K 
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQ 452

Query: 604 SYTRLSVLKNTE 615
               +SVL+   
Sbjct: 453 VSDLISVLREAN 464


>gi|301757526|ref|XP_002914626.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DDX17-like [Ailuropoda melanoleuca]
          Length = 775

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 157/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 162 RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 216

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 217 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 270

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 271 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 330

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 331 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 386

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 387 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 446

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 447 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 498

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 499 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 557

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 558 NKGTAYTFFTPGNLKQARELIKVLEEAN 585


>gi|148613856|ref|NP_001091974.1| probable ATP-dependent RNA helicase DDX17 isoform 3 [Homo sapiens]
          Length = 731

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 157/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 118 RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 172

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 173 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 226

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 227 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 286

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 287 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 342

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 343 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 402

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 403 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 454

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 455 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 513

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 514 NKGTAYTFFTPGNLKQARELIKVLEEAN 541


>gi|38201710|ref|NP_006377.2| probable ATP-dependent RNA helicase DDX17 isoform 1 [Homo sapiens]
 gi|110611789|gb|AAH00595.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
          Length = 729

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 157/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 118 RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 172

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 173 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 226

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 227 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 286

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 287 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 342

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 343 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 402

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 403 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 454

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 455 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 513

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 514 NKGTAYTFFTPGNLKQARELIKVLEEAN 541


>gi|254514732|ref|ZP_05126793.1| RNA helicase DbpA [gamma proteobacterium NOR5-3]
 gi|219676975|gb|EED33340.1| RNA helicase DbpA [gamma proteobacterium NOR5-3]
          Length = 462

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 87/466 (18%), Positives = 174/466 (37%), Gaps = 60/466 (12%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
                + L  + +   T  Q  ++  +L+          I +   GSGKT    I +   
Sbjct: 12  SPAQFEALTALGYEHMTPVQAQSLPLVLKGRDV------IARARTGSGKTAAFGIGLLQT 65

Query: 318 VEA---GGQAVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +     G QA+++ P   LA Q   E  +  ++   I +  + G  P   +  +LE    
Sbjct: 66  INPRFFGVQALVLCPTRELAEQVSGELRRLASRMANIKLVTLCGGKPFGPQVGSLEH--- 122

Query: 374 GQAHIIIGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
             AHI++GT     D +Q   L L      ++DE  R          +        +++ 
Sbjct: 123 -GAHIVVGTPGRILDHLQRKTLSLDGLKVLVLDEADRMLDMGFADSMES-------IISE 174

Query: 429 TPI-PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           TP   +TL+ ++    +I K++        + TV   +   DEVIE+L   + + ++   
Sbjct: 175 TPKSRQTLLFSATYPENIRKMSASIQRSPTMVTVDEDVGHADEVIEQLFFEVQKHERNTT 234

Query: 488 ICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +    E  +        N +   +    + + +      IHG +   +++ V+  F N +
Sbjct: 235 LLALFEHYRPANAVVFCNTKKQCDEVAKILQEYDIEARAIHGDLEQRERDQVLVQFSNNS 294

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           C +L+AT V   G+D+   +++I           +H++ GR GR  E    + +  P  +
Sbjct: 295 CPVLVATDVAARGLDIKALAMVINYELPRDPDVYVHRI-GRTGRAGETGLAMSIVIPSET 353

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLK--------------------QRKEGEILG--IKQS 639
           +         K       +   D                      + + G+ILG     +
Sbjct: 354 QRIRKIEEFQKQPCACDTLPSLDRDPNYFLKAPMVTIQLDAGRKQKLRPGDILGALTGDA 413

Query: 640 GMPKFLIAQPELHDS--LLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           G+    I +  + D    + + R   +  +    +   ++G+SIR+
Sbjct: 414 GLVGTQIGKISIFDQWSFVALERDALRQAMNYLAN-GKIKGRSIRV 458


>gi|254284073|ref|ZP_04959041.1| RNA helicase DbpA [gamma proteobacterium NOR51-B]
 gi|219680276|gb|EED36625.1| RNA helicase DbpA [gamma proteobacterium NOR51-B]
          Length = 474

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/460 (18%), Positives = 170/460 (36%), Gaps = 65/460 (14%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q  ++  IL           I++   GSGKT    + + A +     G
Sbjct: 32  LDALGYKAMTPVQAQSLPLILSGRDV------IVRAKTGSGKTAAFALGLLATINPRFFG 85

Query: 322 GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA +M P   LA Q  + I++   +   I + ++ G +P   +R +L       AHI++
Sbjct: 86  VQAFVMCPTRELADQVGKEIRRLASRMPNIKLVLLCGGVPLGPQRDSL----SHGAHIVV 141

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    +D ++           L+L   D     G    +K                   
Sbjct: 142 GTPGRIEDHLKRGSLNIESVKTLVLDEADRMLDMGFADAIKQIISGMPGD---------R 192

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++    DI +I+ +   R P    +  +   + VIE+L   +++ ++   +C   
Sbjct: 193 QTLLFSATYPQDIQRIS-RSIQRNPASVTVDDVAHNEAVIEQLFYEVNKHERQATLCALF 251

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E  +        N +   +               IHG +   +++ V+    N +C +L+
Sbjct: 252 EHYRPANAVVFCNTKKQCDEVAVFLRGQGIEARAIHGDLEQRERDQVLLQLTNDSCPVLV 311

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ D  +++           +H++ GR GR   +     +  P  S     
Sbjct: 312 ATDVAARGLDIKDLEMVVNYELPRDPEVYVHRI-GRTGRAGAVGKACSIVVPAESPRIRA 370

Query: 607 RLSVLKNTEDGFLIAEEDLK--------------------QRKEGEILG--IKQSGMPKF 644
                +      ++A  D                      + + G++LG     +G+   
Sbjct: 371 IEDYKQQPCACDVLASLDRDPDYQLTGAMVTIQLDAGRKQKVRPGDVLGALTGDAGLSGD 430

Query: 645 LIAQPELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIR 682
            I +  + D  S + ++R+  +  +        V+G+S+R
Sbjct: 431 QIGKISIFDTSSYVAVSRQALRQAMN-YLTQGKVKGRSVR 469


>gi|257482474|ref|ZP_05636515.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330984618|gb|EGH82721.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009703|gb|EGH89759.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 459

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/456 (19%), Positives = 181/456 (39%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ ++  T  Q  ++  IL+ M        I Q   GSGKT    I +   +     G
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMD------LIAQAKTGSGKTAAFGIGLLNPINPRFFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA Q  + I++  +    I V  + G +    +  +LE      AHII+
Sbjct: 73  CQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH----GAHIIV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q  ++   L+L  ++        + L +        ++  T     +TL+ ++ 
Sbjct: 129 GTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQT-PQRRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
             + I +++ K       +TV +     D  IE++   +S  ++   +   +   +    
Sbjct: 188 YPVGIKQLSSKFMRDP--QTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLGHFRPASC 245

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + V E  + L     S++ + HG +   D++ V+  F N +  +L+AT V   
Sbjct: 246 VAFCFTKQQVQEVVDHLTAKGMSAVGL-HGDLEQRDRDQVLAMFANRSTSVLVATDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+    ++I           +H++ GR GR  E    + L  P  S+ +     + K 
Sbjct: 305 GLDIDALDMVINVELARDSEIHIHRV-GRTGRAGEKGIAVSLVAPSESQRARAIEELQKA 363

Query: 614 --------------------TEDGFLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPEL 651
                               T     I      + + G+ILG    ++G+    + +  +
Sbjct: 364 PLNWQQYDQLSVKEGGKLLPTMTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAI 423

Query: 652 HD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            D  + + + R  AK  L +  +   ++G+S+R+ +
Sbjct: 424 FDFQAYVAVERSMAKQALERLNN-GKIKGKSLRVRI 458


>gi|309262543|ref|XP_003085827.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Mus
           musculus]
 gi|309271943|ref|XP_003085450.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Mus
           musculus]
          Length = 670

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 160/432 (37%), Gaps = 47/432 (10%)

Query: 212 PRKAKDFEWTSPAR-ERLAYDELLAGQIALLLMRKQFKKEIGIPI---NVEGKIAQKILR 267
           P+  K+F    P    R A +     +   + +R     +  +     N    +   I R
Sbjct: 107 PKFEKNFYQEHPDLARRTAQEVDTYRRSKEITVRGHNCPKPVLKFYEANFPANVMDVIAR 166

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------E 319
                PT  Q       L  +     M+ + Q   GSGKTL  L+     +         
Sbjct: 167 QNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIIHQPFLERG 220

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER       I 
Sbjct: 221 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEIC 276

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTAT 429
           I T     D ++  K        L+L   D     G + +++    Q       L+ +AT
Sbjct: 277 IATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 336

Query: 430 PIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGK 483
                R L    L D     I   E  A      I  V   + + +++I  ++ ++SE +
Sbjct: 337 WPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLILLMEEIMSEKE 396

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  + +       R   E    +      ++ I HG  S  +++ V+  FK+G   
Sbjct: 397 NKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLSEFKHGKAS 448

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    + P   K 
Sbjct: 449 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQ 507

Query: 604 SYTRLSVLKNTE 615
           +   +SVL+   
Sbjct: 508 ASDLISVLREAN 519


>gi|289624121|ref|ZP_06457075.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647605|ref|ZP_06478948.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|320321939|gb|EFW78035.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320330955|gb|EFW86929.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330865833|gb|EGH00542.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330872189|gb|EGH06338.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 459

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/456 (19%), Positives = 181/456 (39%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ ++  T  Q  ++  IL+ M        I Q   GSGKT    I +   +     G
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMD------LIAQAKTGSGKTAAFGIGLLNPINPRFFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA Q  + I++  +    I V  + G +    +  +LE      AHII+
Sbjct: 73  CQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH----GAHIIV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q  ++   L+L  ++        + L +        ++  T     +TL+ ++ 
Sbjct: 129 GTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQT-PQRRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
             + I +++ K       +TV +     D  IE++   +S  ++   +   +   +    
Sbjct: 188 YPVGIKQLSSKFMRDP--QTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLGHFRPASC 245

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + V E  + L     S++ + HG +   D++ V+  F N +  +L+AT V   
Sbjct: 246 VAFCFTKQQVQEVVDHLTAKGMSAVGL-HGDLEQRDRDQVLAMFANRSTSVLVATDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+    ++I           +H++ GR GR  E    + L  P  S+ +     + K 
Sbjct: 305 GLDIDALDMVINVELARDSEIHIHRV-GRTGRAGEKGIAVSLVAPSESQRARAIEELQKA 363

Query: 614 --------------------TEDGFLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPEL 651
                               T     I      + + G+ILG    ++G+    + +  +
Sbjct: 364 PLNWQQYDQLSIKEGGKLLPTMTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAI 423

Query: 652 HD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            D  + + + R  AK  L +  +   ++G+S+R+ +
Sbjct: 424 FDFQAYVAVERSMAKQALERLNN-GKIKGKSLRVRI 458


>gi|2500527|sp|Q61656|DDX5_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box RNA helicase DEAD1; Short=mDEAD1; AltName:
           Full=DEAD box protein 5; AltName: Full=RNA helicase p68
 gi|51263|emb|CAA46581.1| p68 RNA helicase [Mus musculus]
          Length = 614

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 158/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVDTY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARHNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HHPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 217 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 334 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 385

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 444

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 445 FTPNNIKQVSDLISVLREAN 464


>gi|158424139|ref|YP_001525431.1| helicase [Azorhizobium caulinodans ORS 571]
 gi|158331028|dbj|BAF88513.1| helicase [Azorhizobium caulinodans ORS 571]
          Length = 582

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/364 (20%), Positives = 142/364 (39%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI  +L       R   +     G+GKT    + M   +E G       + +
Sbjct: 86  TPTPIQAQAIPHVLA------RRDVLGLAQTGTGKTAAFTLPMLTLLEQGRARARMPRTL 139

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   +Y +N ++ V ++ G +    +   L R       ++I T   
Sbjct: 140 ILEPTRELAAQVEENFVRYGKNHKLNVALLIGGVSFGDQDTKLLR----GVDVLIATPGR 195

Query: 386 FQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--R 433
             D ++  +L+L      ++DE  R      +   ++           L  +AT  P  +
Sbjct: 196 LLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFSATMPPEIQ 255

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKVVLSEGKK---AYWIC 489
            LV   L +    ++++  +    I  +++   R D E  E L+ ++    +       C
Sbjct: 256 RLVSQFLSNPVRVEVSKPASANTSITQLLVASGREDYEKRETLRELIRNADQLQNGIVFC 315

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         R V     SL +H   ++  +HG M    +   +D F+ G   LL+A+ 
Sbjct: 316 NR--------KRDVAVVHRSLQKHG-FNVVCLHGDMDQHARTQALDQFRTGEATLLVASD 366

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+   S +   +  H     +H++ GR GR     + I+L     +K+      
Sbjct: 367 VAARGLDIPAVSHVFNYDVPHHSEDYVHRI-GRTGRAGRTGTAIMLVTHDDAKSLAAIEK 425

Query: 610 VLKN 613
           ++ N
Sbjct: 426 LIGN 429


>gi|295106692|emb|CBL04235.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 530

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 144/401 (35%), Gaps = 43/401 (10%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------E 319
             + +  PT  QE AI  +L+          I     G+GKT   L+ + + +       
Sbjct: 18  EKLGYENPTPVQEQAIPLVLEGRD------LIAAASTGTGKTAAFLLPILSTLPRVKGRN 71

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              + ++++P   LAQQ      + ++ T+     + G  P   + K L     G   ++
Sbjct: 72  RAPRVLVVSPTRELAQQIARTCMQISRQTRHFTTTVFGGTPYGPQIKELR----GGTDVL 127

Query: 380 IGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLT-----QKATAPHVLLMTAT 429
           I T    +D ++   + L  V     DE  R      L                LL +AT
Sbjct: 128 IATPGRLKDLMKRGVVNLSSVEVLVLDEADRMLDMGFLPDVTTIVDATPECRQTLLFSAT 187

Query: 430 PIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                +  + + L D  + +I       K ++  ++PI   ++      V+  +G +   
Sbjct: 188 IDQSIQKNLGSLLNDPAMVEIARNGETAKTVEQFMMPIKNFNKPELLEAVLREKGSERII 247

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +  +         ++  E               IH   S   +   +++F+ G   +L+A
Sbjct: 248 VFART--------KNRTEDCAEALCDAGFRAESIHSDKSQGARRRALENFRRGKTSILVA 299

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V+  GIDV D   +I  +        +H++ GR GR  E    I       S+     
Sbjct: 300 TDVLARGIDVPDVDHVINFDLPDMPEDYVHRI-GRTGRAGEKGYAISFVTRETSRTLRDI 358

Query: 608 LSVLKNTEDGFLI--AEED---LKQRKEGEILGIKQSGMPK 643
             ++        +   E D   LKQ+K G   G  +SG  K
Sbjct: 359 ERLIGKDIPFMELETYELDPTLLKQKKGGARQGGSKSGGSK 399


>gi|56090441|ref|NP_001007614.1| probable ATP-dependent RNA helicase DDX5 [Rattus norvegicus]
 gi|50927691|gb|AAH79036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Rattus norvegicus]
 gi|149054596|gb|EDM06413.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
 gi|149054597|gb|EDM06414.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
 gi|149054598|gb|EDM06415.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
          Length = 615

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 158/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVDTY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 217 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 334 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 385

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 444

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 445 FTPNNIKQVSDLISVLREAN 464


>gi|226021|prf||1406327A growth regulated nuclear 68 protein
          Length = 594

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 158/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 32  PKFEKNFYQEHPDLARRTAQEVETY--------RRSKEITVRGHNCPKPVLNFYEANFPA 83

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 84  NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 137

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 138 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 196

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 197 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 253

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 254 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 313

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 314 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 365

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 366 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 424

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 425 FTPNNIKQVSDLISVLREAN 444


>gi|83816893|ref|NP_031866.2| probable ATP-dependent RNA helicase DDX5 [Mus musculus]
 gi|26354006|dbj|BAC40633.1| unnamed protein product [Mus musculus]
 gi|74141529|dbj|BAE38540.1| unnamed protein product [Mus musculus]
 gi|74177712|dbj|BAE38954.1| unnamed protein product [Mus musculus]
 gi|82568932|gb|AAI08370.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|120537322|gb|AAI29875.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|123243266|emb|CAM18566.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|127799027|gb|AAH62916.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|148702364|gb|EDL34311.1| mCG2872, isoform CRA_a [Mus musculus]
 gi|148702366|gb|EDL34313.1| mCG2872, isoform CRA_a [Mus musculus]
 gi|148702367|gb|EDL34314.1| mCG2872, isoform CRA_a [Mus musculus]
          Length = 615

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 158/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVDTY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 217 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 334 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 385

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 444

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 445 FTPNNIKQVSDLISVLREAN 464


>gi|330812282|ref|YP_004356744.1| ATP-independent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380390|gb|AEA71740.1| putative ATP-independent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 560

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 96/456 (21%), Positives = 184/456 (40%), Gaps = 52/456 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ +   T  Q  ++  IL+ M        I Q   GSGKT    I +   +     G
Sbjct: 120 LESLGYAQMTPIQAQSLPVILKGMD------LIAQAKTGSGKTAAFGIGLLNPINPRFFG 173

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA Q  + I++  +    I V  + G +    +  +LE      AHII+
Sbjct: 174 CQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIASLEH----GAHIIV 229

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q  ++   L+L  ++        + L +        ++  T     +TL+ ++ 
Sbjct: 230 GTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIQQTPER-RQTLLFSAT 288

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
             + I +++ K       + V       D  IE+    +S  ++   +   +   +    
Sbjct: 289 YPVGIKQLSSKFMRNP--QQVKAEAFHSDAQIEQRFYEISPEERMDAVVKVLAHFRPASC 346

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + V E  + L     S++ + HG +   D++ V+  F N +  +L+AT V   
Sbjct: 347 VAFCFTKQQVQETVDHLTSKGISAVGL-HGDLEQRDRDQVLAMFANRSTSVLVATDVAAR 405

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS--------- 604
           G+D+    ++I           +H++ GR GR  E    I L  P  +  +         
Sbjct: 406 GLDIDALDMVINVELARDSEIHIHRV-GRTGRAGEKGIAISLVAPSEAHRAQAIEQLQKS 464

Query: 605 ---YTRLSVLKNTEDGFLI-AEEDL-------KQRKEGEILG--IKQSGMPKFLIAQPEL 651
              + +L  LK+   G L+ A   L        + + G+ILG    ++G+P   + +  +
Sbjct: 465 PLSWDQLDNLKSQGGGPLLPAMSTLCIGAGRKDKVRPGDILGALTGEAGIPGTQVGKIAI 524

Query: 652 HD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            D  + + + R  AK  L +  D   ++G+S+R+ +
Sbjct: 525 FDFQAYVAVERGIAKQALQRLND-GKIKGRSLRVRI 559


>gi|330501428|ref|YP_004378297.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina NK-01]
 gi|328915714|gb|AEB56545.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina NK-01]
          Length = 458

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/455 (18%), Positives = 180/455 (39%), Gaps = 64/455 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
             T  Q +++  IL+          I Q   GSGKT    I +   +     G QA+++ 
Sbjct: 26  EMTPIQAASLPLILKGRD------LIAQAKTGSGKTAAFGIGLLHPLNPRYFGCQALVLC 79

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I++  +    I V  + G +P   +  +LE      AH+I+GT    Q
Sbjct: 80  PTRELADQVAKEIRRLARAADNIKVLTLCGGVPFGPQIGSLEH----GAHVIVGTPGRVQ 135

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           + ++           L+L   D     G    +    + T             +TL+ ++
Sbjct: 136 EHLRKGTLKVDGLNTLVLDEADRMLDMGFVDSISEIIEQTPAR---------RQTLLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                I ++  +   R P +  +  ++  D+ IE+    ++ G++   +   +   ++  
Sbjct: 187 TYPAGIEQLAARFL-RTPERVEVEAMHDDDQ-IEQRFYEIAPGQRMQAVSILLRHFRKQP 244

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R   +   +  E    S A +HG +   +++ ++  F N +  +L+AT V   
Sbjct: 245 VVAFCATRQQCDELAAQLEAEKISAAALHGDLEQRERDQILALFANRSLSVLVATDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+    ++I           +H++ GR GR  +    + L  PP +  +    ++   
Sbjct: 305 GLDIAGLEMVINVELSRDAEVHIHRI-GRSGRAGDKGLALSLVAPPEASRAQAIETLQGK 363

Query: 614 TEDGFLI------------AEEDL-------KQRKEGEILG--IKQSGMPKFLIAQPELH 652
           T   + +                L       ++ + G+ILG    ++G+P   + +  L 
Sbjct: 364 TLAWYPLPATKSGGEPLLPPMHTLCIGAGRKEKLRPGDILGALTGEAGIPGDQVGKIALF 423

Query: 653 D--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           D  +L+ + R  A+  L +  +   ++G+++R+ L
Sbjct: 424 DYQALVAVQRDVARQALKRLSE-GKIKGRTLRVRL 457


>gi|55562721|gb|AAH86320.1| Ddx5 protein [Mus musculus]
          Length = 648

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 158/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 85  PKFEKNFYQEHPDLARRTAQEVDTY--------RRSKEITVRGHNCPKPVLNFYEANFPA 136

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 137 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 190

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 191 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 249

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 250 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 306

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 307 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 366

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 367 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 418

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 419 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 477

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 478 FTPNNIKQVSDLISVLREAN 497


>gi|77360862|ref|YP_340437.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875773|emb|CAI86994.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 466

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 70/384 (18%), Positives = 148/384 (38%), Gaps = 45/384 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +PT  Q  AI  I++      R   +     G+GKT    + +   + +G        +A
Sbjct: 23  TPTPIQAQAIPAIIE------RRDVMAAAQTGTGKTAGFTLPLIERLSSGPKAKSNHVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +++Y +++ +   ++ G +    + + L +       I++ T  
Sbjct: 77  LILTPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLRK----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  + ++++DE  R      +   ++       L+   P  R  ++ S
Sbjct: 133 RLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKR-------LIAKMPAKRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  +   N   + + +    + + +K   +   I       
Sbjct: 186 ATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKPRKTALLSHLIRTNDWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   +D FK+G  ++L+AT ++  
Sbjct: 246 VLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVATDIVAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL-- 611
           G+D+V+   ++  +  +     +H++ GR GR       I       + + Y     +  
Sbjct: 306 GLDIVELPHVVNYDLPNVYEDYVHRI-GRTGRAGASGHAISFVTTEDAVDLYGIERFIGE 364

Query: 612 ---KNTEDGFL----IAEEDLKQR 628
              + TE+GF     + E DL  R
Sbjct: 365 LIPRATEEGFEPVNPVPERDLDAR 388


>gi|194226836|ref|XP_001916530.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Equus
           caballus]
          Length = 791

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 157/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 180 RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 234

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 235 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 288

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 289 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 348

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 349 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 404

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 405 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 464

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 465 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 516

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 517 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 575

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 576 NKGTAYTFFTPGNLKQARELIKVLEEAN 603


>gi|93587673|ref|NP_001035277.1| probable ATP-dependent RNA helicase DDX17 isoform 4 [Mus musculus]
 gi|76364169|sp|Q501J6|DDX17_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX17; AltName:
           Full=DEAD box protein 17
 gi|63146347|gb|AAH96036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Mus musculus]
          Length = 650

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 157/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 39  RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 93

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 147

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 148 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 207

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 208 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 263

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 264 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 323

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 324 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 375

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 376 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 434

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 435 NKGTAYTFFTPGNLKQARELIKVLEEAN 462


>gi|40068493|ref|NP_951062.1| probable ATP-dependent RNA helicase DDX17 isoform 1 [Mus musculus]
 gi|74181626|dbj|BAE30078.1| unnamed protein product [Mus musculus]
 gi|74220643|dbj|BAE31531.1| unnamed protein product [Mus musculus]
 gi|148672698|gb|EDL04645.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_a [Mus
           musculus]
          Length = 652

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 157/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 39  RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 93

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 147

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 148 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 207

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 208 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 263

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 264 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 323

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 324 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 375

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 376 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 434

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 435 NKGTAYTFFTPGNLKQARELIKVLEEAN 462


>gi|126339554|ref|XP_001367967.1| PREDICTED: similar to DEAD-box protein p72 [Monodelphis domestica]
          Length = 772

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 157/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 161 RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 215

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 216 FHHANFPQYVMDVLMDQNFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 269

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 270 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 329

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 330 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 385

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 386 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 445

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 446 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 497

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 498 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 556

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 557 NKGTAYTFFTPGNLKQARELIKVLEEAN 584


>gi|205364353|gb|ACI04543.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Rattus norvegicus]
          Length = 614

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 158/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVDTY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 217 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 334 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 385

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 444

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 445 FTPNNIKQVSDLISVLREAN 464


>gi|228902358|ref|ZP_04066515.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis IBL 4222]
 gi|228857327|gb|EEN01830.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis IBL 4222]
          Length = 176

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 108/166 (65%), Gaps = 1/166 (0%)

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           +HGR+S  +KE +M  F     ++L++TTV+EVG++V +A++++I +AE FGL+QLHQLR
Sbjct: 1   MHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLR 60

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           GRVGRG E S C+L+  P  S+    R+ ++  T DGF+++E+DL+ R  G+  G KQSG
Sbjct: 61  GRVGRGSEQSYCLLIADPK-SETGKERMRIMTETNDGFVLSEKDLELRGPGDFFGSKQSG 119

Query: 641 MPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
           +P+F +A        LE AR+DA  ++  +    + +  ++R  L 
Sbjct: 120 LPEFKVADMVHDYRALETARQDAAILVESEAFWHNDQYAALRTYLD 165


>gi|71734717|ref|YP_272808.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555270|gb|AAZ34481.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 479

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 90/456 (19%), Positives = 181/456 (39%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ ++  T  Q  ++  IL+ M        I Q   GSGKT    I +   +     G
Sbjct: 39  LESLGYAEMTPIQAQSLPVILKGMD------LIAQAKTGSGKTAAFGIGLLNPINPRFFG 92

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA Q  + I++  +    I V  + G +    +  +LE      AHII+
Sbjct: 93  CQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH----GAHIIV 148

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q  ++   L+L  ++        + L +        ++  T     +TL+ ++ 
Sbjct: 149 GTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQT-PQRRQTLLFSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
             + I +++ K       +TV +     D  I+++   +S  ++   +   +   +    
Sbjct: 208 YPVGIKQLSSKFMRDP--QTVKVEALHADSQIDQIFYEISPEQRLEAVVKVLGHFRPASC 265

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + V E  + L     S++ + HG +   D++ V+  F N +  +L+AT V   
Sbjct: 266 VAFCFTKQQVQEVVDHLTAKGMSAVGL-HGDLEQRDRDQVLAMFANRSTSVLVATDVAAR 324

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+    ++I           +H++ GR GR  E    + L  P  S+ +     + K 
Sbjct: 325 GLDIDALDMVINVELARDSEIHIHRV-GRTGRAGEKGIAVSLVAPSESQRARAIEELQKA 383

Query: 614 --------------------TEDGFLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPEL 651
                               T     I      + + G+ILG    ++G+    + +  +
Sbjct: 384 PLNWQQYDQLSIKEGGKLLPTMTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAI 443

Query: 652 HD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            D  + + + R  AK  L +  +   ++G+S+R+ +
Sbjct: 444 FDFQAYVAVERSMAKQALERLNN-GKIKGKSLRVRI 478


>gi|17065030|gb|AAL32669.1| RNA helicase, DRH1 [Arabidopsis thaliana]
          Length = 619

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 46/384 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +PT  Q  +    +Q          +     GSGKTL  LI     ++        G   
Sbjct: 180 APTPIQAQSWPIAMQGRD------IVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTI 233

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q  E   K+ ++++I    + G  P+  + + LER     A I++ T  
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLER----GADIVVATPG 289

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT 434
              D ++  +        L+L   D     G   Q R  + +  T    L+ TAT  P+ 
Sbjct: 290 RLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTAT-WPKG 348

Query: 435 L------VLTSLGDIDISKITEKPAGRK-PIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           +      +L +   ++I  + E  A +       ++        +E++      G K   
Sbjct: 349 VRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVII 408

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C        S  R   +   +L   F +  A IHG  S  ++++V++ F++G   +L+A
Sbjct: 409 FC--------STKRMCDQLTRNLTRQFGA--AAIHGDKSQPERDNVLNQFRSGRTPVLVA 458

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   ++  +  +     +H++ GR GR          +    SK++   
Sbjct: 459 TDVAARGLDVKDIRAVVNYDFPNGVEDYVHRI-GRTGRAGATGQAFTFFGDQDSKHASDL 517

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEG 631
           + +L+           ++  R  G
Sbjct: 518 IKILEGANQRVPPQIREMATRGGG 541


>gi|291406391|ref|XP_002719530.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 3
           [Oryctolagus cuniculus]
          Length = 614

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 158/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVETY--------RRSKEVTVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 217 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 334 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 385

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 444

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 445 FTPNNIKQVSDLISVLREAN 464


>gi|4758138|ref|NP_004387.1| probable ATP-dependent RNA helicase DDX5 [Homo sapiens]
 gi|300793700|ref|NP_001178324.1| probable ATP-dependent RNA helicase DDX5 [Bos taurus]
 gi|73965213|ref|XP_850467.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 2 [Canis
           familiaris]
 gi|109116805|ref|XP_001109860.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Macaca
           mulatta]
 gi|297487273|ref|XP_002696148.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2 [Bos
           taurus]
 gi|301778273|ref|XP_002924553.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Ailuropoda melanoleuca]
 gi|332227004|ref|XP_003262677.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Nomascus
           leucogenys]
 gi|129383|sp|P17844|DDX5_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5; AltName: Full=RNA helicase p68
 gi|35220|emb|CAA36324.1| unnamed protein product [Homo sapiens]
 gi|38318|emb|CAA33751.1| unnamed protein product [Homo sapiens]
 gi|2599360|gb|AAB84094.1| RNA helicase p68 [Homo sapiens]
 gi|16359122|gb|AAH16027.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens]
 gi|30582725|gb|AAP35589.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase,
           68kDa) [Homo sapiens]
 gi|61362303|gb|AAX42197.1| DEAD box polypeptide 5 [synthetic construct]
 gi|61362310|gb|AAX42198.1| DEAD box polypeptide 5 [synthetic construct]
 gi|119614608|gb|EAW94202.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, isoform CRA_a [Homo
           sapiens]
 gi|119614609|gb|EAW94203.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, isoform CRA_a [Homo
           sapiens]
 gi|123979568|gb|ABM81613.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [synthetic construct]
 gi|123994197|gb|ABM84700.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [synthetic construct]
 gi|168277560|dbj|BAG10758.1| ATP-dependent RNA helicase DDX5 [synthetic construct]
 gi|197692215|dbj|BAG70071.1| ATP-dependent RNA helicase DDX5 [Homo sapiens]
 gi|296476161|gb|DAA18276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2 [Bos taurus]
          Length = 614

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 158/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVETY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 217 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 334 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 385

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 444

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 445 FTPNNIKQVSDLISVLREAN 464


>gi|298674218|ref|YP_003725968.1| DEAD/DEAH box helicase domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298287206|gb|ADI73172.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 431

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/355 (21%), Positives = 136/355 (38%), Gaps = 39/355 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  +K + ++ +  PT  Q  +I  I+Q          I Q   G+GKT    I     
Sbjct: 12  SRDIEKAIEDLGYEEPTPIQARSIPYIMQGRDV------IGQAQTGTGKTAAFGIPALEK 65

Query: 318 VEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           V+      Q +++ P   LA Q  + + K  +  +I V  I G  P   + KAL +    
Sbjct: 66  VDRNSKKVQTIVLCPTRELANQVADELNKLARYKKIKVLPIYGGQPIERQIKALNK---- 121

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLM 426
            A I+IGT     D ++ + L L  V        DE    G ++ ++L          L 
Sbjct: 122 GAQIVIGTPGRILDHMERHTLSLDNVKMTVLDEADEMLDMGFREDIELI---------LS 172

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +T + ++     I K+T+K      +   +     + +V E+    + E  K  
Sbjct: 173 KLPDKRQTTLFSATMPGPIMKMTKKYQDNPELIKTVHKKLTVPQV-EQTYFEVKERSKPE 231

Query: 487 WICPQIE------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +C   +           N +  V+      +        +HG M    ++ VM +FKNG
Sbjct: 232 ALCRLTDFYNIKSSLVFCNTKKGVDNLVETLKTRGYLADGLHGDMKQKQRDKVMSNFKNG 291

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             + L+AT V   GIDV +  ++   +      + +H++ GR GR  +       
Sbjct: 292 EIETLVATDVAARGIDVENIEVVFNYDVPQDEESYVHRI-GRTGRAGKQGKAFTF 345


>gi|126727175|ref|ZP_01743012.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2150]
 gi|126703603|gb|EBA02699.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2150]
          Length = 574

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 72/385 (18%), Positives = 146/385 (37%), Gaps = 46/385 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           ++++ K+ + +      SPT  Q  AI   L+          +     G+GKT    + M
Sbjct: 7   LSLDPKVLKAVAETGYESPTPIQAGAIPPALEGKDV------LGIAQTGTGKTASFTLPM 60

Query: 315 AAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
            + +  G       +++++AP   LA Q  E    Y++ +++   ++ G +    + K +
Sbjct: 61  ISLLSKGRARARMPRSLVLAPTRELAAQVAENFDAYSKYSKLTKALLIGGVSFKEQDKLI 120

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R       ++I T     D ++  KL+L     ++VDE  R      +   ++      
Sbjct: 121 DR----GVDVLIATPGRLLDHVERGKLLLTGVQIMVVDEADRMLDMGFIPDIER------ 170

Query: 424 LLMTATPI-PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI-------ERL 475
            +   TP   +TL  ++    +I +IT       P+K  +       E I       E  
Sbjct: 171 -IFKLTPFTRQTLFFSATMAPEIERITNTFL-SAPVKVEVARAATTSETITQGLIWHEPK 228

Query: 476 KVVLSEGKKAYWICPQIEEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           +       K   +   IE + E         N +  V+      +    +   IHG +  
Sbjct: 229 RREFGAKDKRNILRATIEAEGEKCTNAIIFCNRKVEVDIVAKSLKKHGYNAEPIHGDLDQ 288

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +  V++ F+ G  + L A+ V   G+D+ + S +   +        +H++ GR GR  
Sbjct: 289 SHRMKVLNGFREGEIRFLCASDVAARGLDIPNVSHVFNFDVPGHAEDYVHRI-GRTGRAG 347

Query: 588 EISSCILLYHPPLSKNSYTRLSVLK 612
              +   +  P  +K       ++K
Sbjct: 348 RTGTAFTIATPNDAKQLAAVEELVK 372


>gi|229083524|ref|ZP_04215862.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
 gi|228699778|gb|EEL52425.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
          Length = 527

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 160/433 (36%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTHKESV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G+ ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGM-PKFLIAQPELHDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +    L     + + +LE          A
Sbjct: 359 TKRKMDRMNAPTLDEALEGQQRLIAEKLQSTIESDNLSYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|194216755|ref|XP_001495197.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX5
           (DEAD box protein 5) (RNA helicase p68) [Equus caballus]
          Length = 614

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 158/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVETY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 217 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 334 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 385

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 444

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 445 FTPNNIKQVSDLISVLREAN 464


>gi|189913376|ref|YP_001964605.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|167781444|gb|ABZ99741.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 534

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 166/447 (37%), Gaps = 53/447 (11%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
              +  +I Q I      SP+  Q+ AI  +L+          I Q   G+GKT    + 
Sbjct: 19  SFGLRPEILQGITEAGFESPSPIQKQAIPLVLEGKD------LIAQAQTGTGKTAAYGLP 72

Query: 314 MAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
               +  E G Q +++ P   LA Q  + + K  ++  I    I G    + +   + + 
Sbjct: 73  CLNRIKVEDGMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQVAK- 131

Query: 372 AHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHV 423
               A + + T     D ++  +L        IL   DE    G    ++          
Sbjct: 132 ---GAQVAVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFN------ 182

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
                    +TL+ ++     I K+  K     P    I    +  + IE++  ++ E +
Sbjct: 183 ---LLPTKRQTLLFSATMPEPIKKLASKYQTH-PAHVKIAATEKSSKNIEQVYYIIDEAE 238

Query: 484 KAYWICPQIEEK---KESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
           +   +   ++ +   K   F    +  + L    +     +  +HG ++   +E V+ S 
Sbjct: 239 REIAVVRILDYENPFKAIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSL 298

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G  K+L+AT V   G+DV D S++I  +      +  H++ GR GR  +    + L  
Sbjct: 299 HDGRVKILVATDVAARGLDVKDLSLVINYHLPFDSESYTHRI-GRTGRAGKSGKAVTLVT 357

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
              ++ S   L +   +     IA   L  +KE  +         +    +  +   +  
Sbjct: 358 ---TRESRALLRLKGTSGTNLTIAA--LPTKKEVHL-------SREEDFLKKVVDTEI-- 403

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRIL 684
               DA+ +L +   L   R  ++++L
Sbjct: 404 --HADAEAVLEKLLKLEDKRSIALKLL 428


>gi|296201830|ref|XP_002748194.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 1
           [Callithrix jacchus]
          Length = 614

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 158/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLSRRTAQEVETY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 217 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 334 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 385

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 444

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 445 FTPNNIKQVSDLISVLREAN 464


>gi|30584123|gb|AAP36310.1| Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA
           helicase, 68kDa) [synthetic construct]
 gi|60653929|gb|AAX29657.1| DEAD box polypeptide 5 [synthetic construct]
          Length = 615

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 158/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVETY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 217 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 334 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 385

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 444

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 445 FTPNNIKQVSDLISVLREAN 464


>gi|332231227|ref|XP_003264799.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Nomascus
           leucogenys]
          Length = 644

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 157/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 31  RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 85

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 86  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 139

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 140 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 199

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 200 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 255

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 256 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 315

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 316 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 367

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 368 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 426

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 427 NKGTAYTFFTPGNLKQARELIKVLEEAN 454


>gi|30678365|ref|NP_850492.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|42572223|ref|NP_974206.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|79295442|ref|NP_001030619.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|108861885|sp|Q8H136|RH14_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 14
 gi|6016713|gb|AAF01539.1|AC009325_9 RNA helicase, DRH1 [Arabidopsis thaliana]
 gi|3149952|dbj|BAA28347.1| DRH1 [Arabidopsis thaliana]
 gi|332640162|gb|AEE73683.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
 gi|332640164|gb|AEE73685.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
 gi|332640165|gb|AEE73686.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
          Length = 619

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 46/384 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +PT  Q  +    +Q          +     GSGKTL  LI     ++        G   
Sbjct: 180 APTPIQAQSWPIAMQGRD------IVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTI 233

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q  E   K+ ++++I    + G  P+  + + LER     A I++ T  
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLER----GADIVVATPG 289

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT 434
              D ++  +        L+L   D     G   Q R  + +  T    L+ TAT  P+ 
Sbjct: 290 RLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTAT-WPKG 348

Query: 435 L------VLTSLGDIDISKITEKPAGRK-PIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           +      +L +   ++I  + E  A +       ++        +E++      G K   
Sbjct: 349 VRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVII 408

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C        S  R   +   +L   F +  A IHG  S  ++++V++ F++G   +L+A
Sbjct: 409 FC--------STKRMCDQLTRNLTRQFGA--AAIHGDKSQPERDNVLNQFRSGRTPVLVA 458

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   ++  +  +     +H++ GR GR          +    SK++   
Sbjct: 459 TDVAARGLDVKDIRAVVNYDFPNGVEDYVHRI-GRTGRAGATGQAFTFFGDQDSKHASDL 517

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEG 631
           + +L+           ++  R  G
Sbjct: 518 IKILEGANQRVPPQIREMATRGGG 541


>gi|197099326|ref|NP_001126958.1| probable ATP-dependent RNA helicase DDX5 [Pongo abelii]
 gi|75061603|sp|Q5R4I9|DDX5_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|55733290|emb|CAH93327.1| hypothetical protein [Pongo abelii]
          Length = 614

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 158/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVETY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 217 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 334 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 385

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 444

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 445 FTPNNIKQVSDLISVLREAN 464


>gi|189913047|ref|YP_001964936.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167777723|gb|ABZ96023.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 529

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 166/447 (37%), Gaps = 53/447 (11%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
              +  +I Q I      SP+  Q+ AI  +L+          I Q   G+GKT    + 
Sbjct: 14  SFGLRPEILQGITEAGFESPSPIQKQAIPLVLEGKD------LIAQAQTGTGKTAAYGLP 67

Query: 314 MAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
               +  E G Q +++ P   LA Q  + + K  ++  I    I G    + +   + + 
Sbjct: 68  CLNRIKVEDGMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQVAK- 126

Query: 372 AHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHV 423
               A + + T     D ++  +L        IL   DE    G    ++          
Sbjct: 127 ---GAQVAVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFN------ 177

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
                    +TL+ ++     I K+  K     P    I    +  + IE++  ++ E +
Sbjct: 178 ---LLPTKRQTLLFSATMPEPIKKLASKYQTH-PAHVKIAATEKSSKNIEQVYYIIDEAE 233

Query: 484 KAYWICPQIEEK---KESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
           +   +   ++ +   K   F    +  + L    +     +  +HG ++   +E V+ S 
Sbjct: 234 REIAVVRILDYENPFKAIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSL 293

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +G  K+L+AT V   G+DV D S++I  +      +  H++ GR GR  +    + L  
Sbjct: 294 HDGRVKILVATDVAARGLDVKDLSLVINYHLPFDSESYTHRI-GRTGRAGKSGKAVTLVT 352

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
              ++ S   L +   +     IA   L  +KE  +         +    +  +   +  
Sbjct: 353 ---TRESRALLRLKGTSGTNLTIAA--LPTKKEVHL-------SREEDFLKKVVDTEI-- 398

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRIL 684
               DA+ +L +   L   R  ++++L
Sbjct: 399 --HADAEAVLEKLLKLEDKRSIALKLL 423


>gi|126308848|ref|XP_001379329.1| PREDICTED: similar to DDX5 protein [Monodelphis domestica]
          Length = 865

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 94/450 (20%), Positives = 164/450 (36%), Gaps = 63/450 (14%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI 261
           I + +N+   P+  K+F    P   R    E+           ++ K+      N    I
Sbjct: 293 IKKKWNLEELPKFEKNFYQEHPDLARRTAQEVETY--------RRSKEITVRGHNCPKPI 344

Query: 262 AQKILRNIP------------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 N P              PT  Q       L  +     M+ + Q   GSGKTL 
Sbjct: 345 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLS 398

Query: 310 ALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L+     +          G   +++AP   LAQQ  +   +Y++  ++    I G  P+
Sbjct: 399 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPK 458

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + + LER       I I T     D ++  K        L+L   D     G + +++
Sbjct: 459 GPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIR 514

Query: 414 LT--QKATAPHVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPI 465
               Q       L+ +AT     R L    L D     I   E  A      I  V   +
Sbjct: 515 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDV 574

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
            + +++I  ++ ++SE +    +  + +       R   E    +      ++ I HG  
Sbjct: 575 EKDEKLIRLMEEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDK 626

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S  +++ V++ FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R
Sbjct: 627 SQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTAR 685

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
             +  +    + P   K     +SVL+   
Sbjct: 686 STKTGTAYTFFTPNNIKQVSDLISVLREAN 715


>gi|327191069|gb|EGE58122.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
          Length = 499

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 78/364 (21%), Positives = 143/364 (39%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+      R         G+GKT   ++ M + +E G       + +
Sbjct: 24  TPTPIQAGAIPFALE------RRDICGIAQTGTGKTASFVLPMLSLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  +KY +N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER----GADVLICTPGR 133

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIPR 433
             D  +  KL++  V     DE  R      +   ++           L  +AT  P  +
Sbjct: 134 LLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSATMPPEIQ 193

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSEGKKAYWIC 489
            L    L + +  ++ +  +  K +    +  +  D     V+  L     E K A   C
Sbjct: 194 KLADRFLQNPERVEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQGELKNAIIFC 253

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         + V + F SL  H   S+  +HG M    + +++ +F++G  +LL+A+ 
Sbjct: 254 NR--------KKDVADLFRSLERHG-FSVGALHGDMDQRSRTTMLQNFRDGNLQLLVASD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D S +   +        +H++ GR GR     +   L     +K       
Sbjct: 305 VAARGLDIPDVSHVFNFDVPIHSEDYVHRI-GRTGRAGRSGAAFTLVTKRDTKFVDAIEK 363

Query: 610 VLKN 613
           ++  
Sbjct: 364 LIGE 367


>gi|296191894|ref|XP_002743821.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
           [Callithrix jacchus]
          Length = 650

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 157/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 39  RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 93

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 147

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 148 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 207

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 208 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 263

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 264 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 323

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 324 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 375

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 376 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 434

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 435 NKGTAYTFFTPGNLKQARELIKVLEEAN 462


>gi|47678395|emb|CAG30318.1| DDX17 [Homo sapiens]
 gi|109451124|emb|CAK54423.1| DDX17 [synthetic construct]
 gi|109451702|emb|CAK54722.1| DDX17 [synthetic construct]
 gi|119580647|gb|EAW60243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_c [Homo
           sapiens]
 gi|169145045|emb|CAQ08924.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
 gi|208967743|dbj|BAG72517.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [synthetic construct]
          Length = 652

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 157/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 39  RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 93

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 147

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 148 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 207

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 208 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 263

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 264 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 323

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 324 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 375

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 376 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 434

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 435 NKGTAYTFFTPGNLKQARELIKVLEEAN 462


>gi|297261056|ref|XP_001092491.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Macaca
           mulatta]
 gi|297708870|ref|XP_002831174.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Pongo
           abelii]
 gi|332859781|ref|XP_525595.3| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Pan
           troglodytes]
 gi|3122595|sp|Q92841|DDX17_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX17; AltName:
           Full=DEAD box protein 17; AltName: Full=DEAD box protein
           p72; AltName: Full=RNA-dependent helicase p72
 gi|1592565|gb|AAC50787.1| DEAD-box protein p72 [Homo sapiens]
 gi|2832596|emb|CAB09792.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
 gi|119580650|gb|EAW60246.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_f [Homo
           sapiens]
          Length = 650

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 157/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 39  RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 93

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 147

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 148 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 207

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 208 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 263

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 264 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 323

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 324 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 375

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 376 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 434

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 435 NKGTAYTFFTPGNLKQARELIKVLEEAN 462


>gi|327439299|dbj|BAK15664.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 481

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/392 (19%), Positives = 158/392 (40%), Gaps = 42/392 (10%)

Query: 249 KEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
                P++ E    Q  L+++ + +PT+ Q+  +   L+          I++   GSGKT
Sbjct: 4   NFNEFPLSPE---LQNALKDLDYSTPTEVQQKVLPHALK------EQDLIVKAQTGSGKT 54

Query: 308 LVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
               I +   +E      QA+++ P   LA Q  E      +  +I    + G  P  ++
Sbjct: 55  AAFAIPICENIEWIENKPQALVLTPTRELAVQVKEEFTNIGRYKRIKATALYGKQPFRYQ 114

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGV-QQRLKLT 415
           +  L++    + HI +GT     D I+   L        +L   DE    G  +Q   + 
Sbjct: 115 QDELKQ----KTHIAVGTPGRVLDHIEKGTLKLDKIRYVVLDEADEMLNMGFIEQVEAIL 170

Query: 416 QKATAPHVLLMTATPIPRTL--VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  V+++ +  +P ++  + ++  +  +    +       I+  +I +   ++   
Sbjct: 171 AHVEHREVMMLFSATVPESIKKLASNYLNDPVDIEVQSEEAAPKIEHAVIEVQDEEKTAA 230

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
             K+ + E      I  + +++ ++    + +R          S+  +HG M    +  V
Sbjct: 231 VEKIAVVENPDTCIIFCRTKDRVDALHDYLYDR--------EYSVDKLHGGMDQSTRLLV 282

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M+ +K G  + L+AT V   GID+ + S++I  +      A +H+  GR GR  +    +
Sbjct: 283 MNDYKRGDFRYLVATDVAARGIDIENISLVINYDLPMEKEAYVHR-TGRTGRAGKEGKAV 341

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
               P      +  L+ ++    GF I + DL
Sbjct: 342 TFVTP----FEHDFLAGIEELI-GFTITKVDL 368


>gi|218187595|gb|EEC70022.1| hypothetical protein OsI_00586 [Oryza sativa Indica Group]
          Length = 754

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 146/377 (38%), Gaps = 44/377 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
           +PT  Q  +    L++         +     GSGKTL  LI     ++        G   
Sbjct: 249 APTPIQAQSWPIALRNRD------IVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDGPTV 302

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q  +  KK+ ++++I    + G  P+  + + LER     A I++ T  
Sbjct: 303 LVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLER----GADIVVATPG 358

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT 434
              D ++  +        L+L   D     G   Q R  + Q       L+ TAT     
Sbjct: 359 RLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEV 418

Query: 435 L-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +L++   ++I    +  A +   + V +I        ++++      G K    
Sbjct: 419 RKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSKIIIF 478

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C        S  R   +   +L   + +S   IHG  S  +++SV+  F++G C +L+AT
Sbjct: 479 C--------STKRMCDQLARNLARQYGASA--IHGDKSQAERDSVLSEFRSGRCPILVAT 528

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D  +++  +        +H++ GR GR          +    SK +   +
Sbjct: 529 DVAARGLDIKDIRVVVNYDFPTGVEDYVHRI-GRTGRAGATGVAYTFFCDQDSKYASDLV 587

Query: 609 SVLKNTEDGFLIAEEDL 625
            +L+           D+
Sbjct: 588 KILEGANQSVSQQLRDM 604


>gi|115434786|ref|NP_001042151.1| Os01g0172200 [Oryza sativa Japonica Group]
 gi|55296347|dbj|BAD68263.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
 gi|113531682|dbj|BAF04065.1| Os01g0172200 [Oryza sativa Japonica Group]
 gi|215713416|dbj|BAG94553.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 759

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 146/377 (38%), Gaps = 44/377 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
           +PT  Q  +    L++         +     GSGKTL  LI     ++        G   
Sbjct: 253 APTPIQAQSWPIALRNRD------IVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDGPTV 306

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q  +  KK+ ++++I    + G  P+  + + LER     A I++ T  
Sbjct: 307 LVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLER----GADIVVATPG 362

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT 434
              D ++  +        L+L   D     G   Q R  + Q       L+ TAT     
Sbjct: 363 RLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEV 422

Query: 435 L-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +L++   ++I    +  A +   + V +I        ++++      G K    
Sbjct: 423 RKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSKIIIF 482

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C        S  R   +   +L   + +S   IHG  S  +++SV+  F++G C +L+AT
Sbjct: 483 C--------STKRMCDQLARNLARQYGASA--IHGDKSQAERDSVLSEFRSGRCPILVAT 532

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D  +++  +        +H++ GR GR          +    SK +   +
Sbjct: 533 DVAARGLDIKDIRVVVNYDFPTGVEDYVHRI-GRTGRAGATGVAYTFFCDQDSKYASDLV 591

Query: 609 SVLKNTEDGFLIAEEDL 625
            +L+           D+
Sbjct: 592 KILEGANQSVSQQLRDM 608


>gi|75287517|sp|Q5VQL1|RH14_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 14
 gi|55296348|dbj|BAD68264.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
 gi|222617825|gb|EEE53957.1| hypothetical protein OsJ_00557 [Oryza sativa Japonica Group]
 gi|240065031|gb|ACS44654.1| ATP-dependent RNA helicase DB10 [Oryza sativa Japonica Group]
 gi|240065056|gb|ACS44655.1| ATP-dependent RNA helicase DB10 [Oryza sativa Indica Group]
          Length = 708

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 146/377 (38%), Gaps = 44/377 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
           +PT  Q  +    L++         +     GSGKTL  LI     ++        G   
Sbjct: 202 APTPIQAQSWPIALRNRD------IVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDGPTV 255

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q  +  KK+ ++++I    + G  P+  + + LER     A I++ T  
Sbjct: 256 LVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLER----GADIVVATPG 311

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT 434
              D ++  +        L+L   D     G   Q R  + Q       L+ TAT     
Sbjct: 312 RLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEV 371

Query: 435 L-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +L++   ++I    +  A +   + V +I        ++++      G K    
Sbjct: 372 RKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSKIIIF 431

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C        S  R   +   +L   + +S   IHG  S  +++SV+  F++G C +L+AT
Sbjct: 432 C--------STKRMCDQLARNLARQYGASA--IHGDKSQAERDSVLSEFRSGRCPILVAT 481

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D  +++  +        +H++ GR GR          +    SK +   +
Sbjct: 482 DVAARGLDIKDIRVVVNYDFPTGVEDYVHRI-GRTGRAGATGVAYTFFCDQDSKYASDLV 540

Query: 609 SVLKNTEDGFLIAEEDL 625
            +L+           D+
Sbjct: 541 KILEGANQSVSQQLRDM 557


>gi|18395852|ref|NP_566141.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|16226725|gb|AAL16243.1|AF428313_1 AT3g01540/F4P13_9 [Arabidopsis thaliana]
 gi|15215694|gb|AAK91393.1| AT3g01540/F4P13_9 [Arabidopsis thaliana]
 gi|32306509|gb|AAP78938.1| At3g01540 [Arabidopsis thaliana]
 gi|332640163|gb|AEE73684.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
          Length = 618

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 46/384 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +PT  Q  +    +Q          +     GSGKTL  LI     ++        G   
Sbjct: 180 APTPIQAQSWPIAMQGRD------IVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTI 233

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q  E   K+ ++++I    + G  P+  + + LER     A I++ T  
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLER----GADIVVATPG 289

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT 434
              D ++  +        L+L   D     G   Q R  + +  T    L+ TAT  P+ 
Sbjct: 290 RLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTAT-WPKG 348

Query: 435 L------VLTSLGDIDISKITEKPAGRK-PIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           +      +L +   ++I  + E  A +       ++        +E++      G K   
Sbjct: 349 VRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVII 408

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C        S  R   +   +L   F +  A IHG  S  ++++V++ F++G   +L+A
Sbjct: 409 FC--------STKRMCDQLTRNLTRQFGA--AAIHGDKSQPERDNVLNQFRSGRTPVLVA 458

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   ++  +  +     +H++ GR GR          +    SK++   
Sbjct: 459 TDVAARGLDVKDIRAVVNYDFPNGVEDYVHRI-GRTGRAGATGQAFTFFGDQDSKHASDL 517

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEG 631
           + +L+           ++  R  G
Sbjct: 518 IKILEGANQRVPPQIREMATRGGG 541


>gi|73969107|ref|XP_531736.2| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 1 [Canis
           familiaris]
          Length = 664

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 82/462 (17%), Positives = 160/462 (34%), Gaps = 72/462 (15%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 39  RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 93

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 147

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 148 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 207

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRL--- 412
           + + LER       I I T     D ++  K        L+L   D     G + ++   
Sbjct: 208 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 263

Query: 413 --KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP-----------------A 453
             ++    T   + L    P  +TL+ ++    ++ ++ E                    
Sbjct: 264 VDQIRVCKTDDTLSLFPFPPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANH 323

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
               I  V +   +  ++I+ ++ +++E +    I            +   +        
Sbjct: 324 NILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRR 375

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  IHG  S  +++ V++ F++G   +LIAT V   G+DV D   +I  +  +   
Sbjct: 376 DGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSE 435

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
             +H++ GR  R     +    + P   K +   + VL+   
Sbjct: 436 DYVHRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLEEAN 476


>gi|332142673|ref|YP_004428411.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552695|gb|AEA99413.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 480

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 142/371 (38%), Gaps = 41/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  QE AI ++L+          +     G+GKT    + +   + +G        +A
Sbjct: 23  TPSPIQEKAIPEVLEGKDV------LAAAQTGTGKTAGFGLPILQRLMSGPKVSANNVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I  +++   +   ++ G +    +   L +       ++I T  
Sbjct: 77  LILTPTRELAAQVEESICAFSEFLPLKTAVVFGGVGINPQMIKLRK----GVDVLIATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      +   ++       ++   P  R  +L S
Sbjct: 133 RLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKR-------VLKLLPEDRQSLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D      K   R P+     P N   + +E+  V + + KK   +   I+++K   
Sbjct: 186 ATFSDEITTLAKTITRNPVSISTAPANTTVDAVEQHLVTIDKSKKTTALICLIKQQKWEQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R            A IHG  S   +   +  FKNG  K+L+AT +   
Sbjct: 246 VLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGDIKVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL-- 611
           GID+ +  I++  +  +     +H++ GR GR                +N     +++  
Sbjct: 306 GIDISELPIVVNLDLPNTAADYVHRI-GRTGRAGASGQAWSFVSAEELQNLKDIETLIQK 364

Query: 612 ---KNTEDGFL 619
              + T +GF 
Sbjct: 365 LLPRETLEGFE 375


>gi|150391484|ref|YP_001321533.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951346|gb|ABR49874.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 484

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 138/348 (39%), Gaps = 35/348 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           +  + F  PTK Q+  I  IL+          I++   GSGKT    I +   V   E  
Sbjct: 19  ISMLNFESPTKVQQQVIPAILEHKD------IIVKSQTGSGKTAAFAIPICQLVDWDENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E +    +  ++ V  + G  P  H+ K L++    + H+++G
Sbjct: 73  PQALVLVPTRELAIQVKEDMFNIGRFKRLKVAAVYGKAPFYHQEKELKQ----KTHVVVG 128

Query: 382 THALFQDSIQY--------YKLILVIVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D ++           L++   DE    G   Q   + +  +   V ++ +  +P
Sbjct: 129 TPGRIIDHMEKGTFDTSQIKYLVIDEADEMFNMGFVDQIETIIKDLSKKRVTMLLSATMP 188

Query: 433 ---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
               TL    + D   ++I E+ +    I      +   D++     + + E   +  I 
Sbjct: 189 SAIETLSNRYMKDPIHAEIEEESSAVDRISQERYTVEYRDKMKLLSDITIVENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +  V+  N        +   IHG M   D+  VM+ FK G  + L+AT 
Sbjct: 249 --------CNTKQRVDEVNDELIRLNYTCEKIHGGMEQRDRVRVMNEFKQGYFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   GID+ + S++I  +      + +H++ GR GR       I    
Sbjct: 301 VAARGIDIDNISLVINYDIPQDKESYVHRI-GRTGRISREGRAITFVT 347


>gi|32880087|gb|AAP88874.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17, 72kDa [synthetic
           construct]
 gi|61372130|gb|AAX43789.1| DEAD box polypeptide 17 [synthetic construct]
 gi|61372139|gb|AAX43790.1| DEAD box polypeptide 17 [synthetic construct]
          Length = 651

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 157/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 39  RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 93

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 147

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 148 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 207

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 208 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 263

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 264 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 323

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 324 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 375

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 376 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 434

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 435 NKGTAYTFFTPGNLKQARELIKVLEEAN 462


>gi|315274585|ref|ZP_07869461.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120]
 gi|313615787|gb|EFR89039.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120]
          Length = 770

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 105/200 (52%), Gaps = 2/200 (1%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW    ++  A  + +A  +  L   ++ +   G   + + ++ ++     P+  T+ Q 
Sbjct: 573 EWKRVKKKVQASVQDIADDLIKLYAEREAE--KGYAFSADDEMQREFEDAFPYQETEDQL 630

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            +I +I +DM +   M R+L GDVG GKT VAL A   A+  G Q   + P  ILAQQHY
Sbjct: 631 RSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHY 690

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E +K+  Q   I + +++    +  + + L+ + +G   +++GTH L    ++Y  L L+
Sbjct: 691 ETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLL 750

Query: 399 IVDEQHRFGVQQRLKLTQKA 418
           IVDE+ RFGV  + K+ Q  
Sbjct: 751 IVDEEQRFGVTHKEKIKQMR 770


>gi|198282005|ref|NP_001095463.1| probable ATP-dependent RNA helicase DDX17 [Bos taurus]
 gi|154757449|gb|AAI51649.1| DDX17 protein [Bos taurus]
 gi|296487004|gb|DAA29117.1| DEAD box polypeptide 17 [Bos taurus]
          Length = 650

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 157/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 39  RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 93

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 147

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 148 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 207

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 208 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 263

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 264 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 323

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 324 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 375

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 376 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 434

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 435 NKGTAYTFFTPGNLKQARELIKVLEEAN 462


>gi|149065924|gb|EDM15797.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_a [Rattus
           norvegicus]
          Length = 652

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 157/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 39  RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 93

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 147

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 148 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 207

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 208 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 263

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 264 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 323

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 324 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 375

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 376 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 434

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 435 NKGTAYTFFTPGNLKQARELIKVLEEAN 462


>gi|74149390|dbj|BAE22450.1| unnamed protein product [Mus musculus]
          Length = 615

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 158/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVDTY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 217 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEGDRMLDMGFEPQIRKIVDQIRPDR 273

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 334 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 385

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 444

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 445 FTPNNIKQVSDLISVLREAN 464


>gi|193573502|ref|XP_001943796.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Acyrthosiphon
           pisum]
          Length = 737

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 143/396 (36%), Gaps = 44/396 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N +  + + I ++    PT  Q  A+   L           I     GSGKTL  +  M
Sbjct: 247 FNFDDALMKIIRKSDYVQPTPIQSQAVPAALAGRD------IIGIAKTGSGKTLAFIWPM 300

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   +I+AP   L+QQ Y   KK+ +   + V    G   +  + K
Sbjct: 301 LVHIMDQPELKEGDGPVGLILAPTRELSQQIYVEAKKFGKIYNLRVVCCYGGGSKWEQSK 360

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKA 418
           ALE    G A II+GT     D ++           L+L   D     G + +++     
Sbjct: 361 ALE----GGAEIIVGTPGRVIDLVKMSATNLTRVTFLVLDEADRMFNMGFEPQVRSICDH 416

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                      P  +TL+ ++     I K+  +     PI+ V   +   +  + ++ +V
Sbjct: 417 VR---------PDRQTLLFSATFKKKIEKLA-RDILTDPIRIVQGDVGEANTDVAQIMLV 466

Query: 479 LSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
           + +  K  W+   + +   +         +   E+  S        + ++HG M   ++ 
Sbjct: 467 MPQSDKCQWLLDNLVQFTSTGSILVFVTKKLDAEQLASTLSLKEYEVLLLHGDMDQAERN 526

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            V+  FK     +++AT V   G+D+     ++  +         H++ GR GR  E  +
Sbjct: 527 KVITKFKKQEVNIMVATDVAARGLDIAHIRTVVNYDIARDIDTHTHRI-GRTGRAGEKGT 585

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
              L  P   + +   +  L+           DL  
Sbjct: 586 AFTLVTPKDHEFAGHLVRSLEGVGQEVPKPLIDLAM 621


>gi|197692465|dbj|BAG70196.1| ATP-dependent RNA helicase DDX5 [Homo sapiens]
          Length = 614

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 91/438 (20%), Positives = 158/438 (36%), Gaps = 63/438 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVETY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 217 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 334 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 385

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 444

Query: 596 YHPPLSKNSYTRLSVLKN 613
           + P   K     +SVL+ 
Sbjct: 445 FTPNNIKQVSDLISVLRE 462


>gi|293334655|ref|NP_001168054.1| hypothetical protein LOC100381784 [Zea mays]
 gi|223945725|gb|ACN26946.1| unknown [Zea mays]
          Length = 672

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 144/367 (39%), Gaps = 44/367 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
           +PT  Q  +    ++          +     GSGKTL  L+     ++        G   
Sbjct: 179 APTPIQAQSWPIAMKGRD------IVAVAKTGSGKTLGYLLPGFILLKRLHHNSREGPTV 232

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q  +   K+ ++++I    + G  P+  + + LER     A +++ T  
Sbjct: 233 LVLSPTRELATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLRELER----GADVVVATPG 288

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT 434
              D ++  K        L+L   D     G   Q R  + Q       L+ TAT     
Sbjct: 289 RLNDILEMNKVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKQIPPRRQTLMYTATWPKEV 348

Query: 435 L-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +L +   ++I    +  A +   + V +IP       ++++      G K    
Sbjct: 349 RKIASDLLNNPVQVNIGNTDQLVANKSITQHVEVIPHMEKSRRLDQILRSQDPGSKIIIF 408

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C        S  R   +   +L   + +S   IHG  S  +++SV++ F++G C +L+AT
Sbjct: 409 C--------STKRMCDQLARNLSRQYGASA--IHGDKSQAERDSVLNDFRSGRCPVLVAT 458

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D  I++  +        +H++ GR GR     S    +    SK +   +
Sbjct: 459 DVAARGLDIKDIRIVVNYDFPTGVEDYVHRI-GRTGRAGATGSAYTFFGDQDSKYASELV 517

Query: 609 SVLKNTE 615
            +L+   
Sbjct: 518 KILEGAN 524


>gi|169335734|ref|ZP_02862927.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258472|gb|EDS72438.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM
           17244]
          Length = 510

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 144/376 (38%), Gaps = 45/376 (11%)

Query: 262 AQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE- 319
             ++L  + F+ PT  Q  AI  I         +  I +   G+GKT+   I     ++ 
Sbjct: 15  INRVLDEMGFTNPTDIQNKAIPAIRSG------VDVIGKSQTGTGKTIAFAIPAIEKIDI 68

Query: 320 ----AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHG 374
                  Q +I+ P   LAQQ Y  IKK T+    I V  I G +    +   L+     
Sbjct: 69  EQEKPTAQVLIICPTRELAQQGYAEIKKLTKYMPEIKVVDIYGGVSMERQISKLK----- 123

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLM 426
           +AHI+IGT    +D ++   L L  +        DE    G ++ +           +L 
Sbjct: 124 KAHIVIGTPGRIKDHLKRRTLKLQNIKMVVLDEADEMLSMGFKEDI---------DTILK 174

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           TA    +T++ ++     I  I +    + P+   I         I +  + + +GKK  
Sbjct: 175 TAPDTRQTVLFSATMPPAIMNIIDTFL-KNPLLIQIDKEQVTVNKIAQNYIDVPKGKKKE 233

Query: 487 WICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +   +            N + +V+           S   +HG +   ++  VM +FKN 
Sbjct: 234 VLNLLLHYYGSKLTIIFCNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNA 293

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   GIDV D   +I  +        +H++ GR  RG +  + I + +   
Sbjct: 294 KTPILVATDVAARGIDVKDVEYVINYDIPQNSEYYIHRI-GRTARGGKTGTSITMTNNRK 352

Query: 601 SKNSYTRLSVLKNTED 616
                    +LK T  
Sbjct: 353 QVTDLKM--ILKETNS 366


>gi|242051919|ref|XP_002455105.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
 gi|241927080|gb|EES00225.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
          Length = 673

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 88/457 (19%), Positives = 170/457 (37%), Gaps = 56/457 (12%)

Query: 194 LQKKSFPSIAEAFNIIHNPRKAK--DFEWTSPARERLAYDELLAGQIALLLMRKQF---- 247
            Q+   PS   A N    PR A   +   ++P+  +++     +         K      
Sbjct: 89  RQQYVPPSDNRARNDHSEPRSASGVNLSQSAPSTNQVSQAANGSQMSTEAYRAKHEITIV 148

Query: 248 ---KKEIGIPINVEGKIAQKILRNI--PFS-PTKSQESAIKDILQDMSQKNRMLRILQGD 301
                   +     G  ++ +   +   FS PT  Q  +    ++          +    
Sbjct: 149 GNEAPAPFMTFQSTGFPSEILREVLQAGFSAPTPIQAQSWPIAIKGRD------IVAVAK 202

Query: 302 VGSGKTLVALIAMAAAVE-------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL  L+     ++        G   ++++P   LA Q  +   K+ ++++I    
Sbjct: 203 TGSGKTLGYLLPGFILLKRLQHNSREGPTVLVLSPTRELATQIQDEAIKFGRSSRISSTC 262

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRF 406
           + G  P+  + + LER     A +++ T     D ++  K        L+L   D     
Sbjct: 263 LYGGAPKGPQLRELER----GADVVVATPGRLNDILEMNKVSLRQVSYLVLDEADRMLDM 318

Query: 407 GV--QQRLKLTQKATAPHVLLMTATPIPRTL-----VLTSLGDIDISKITEKPAGRKPIK 459
           G   Q R  + Q       L+ TAT           +L +   ++I    +  A +   +
Sbjct: 319 GFEPQIRKIVKQIPPRRQTLMYTATWPKEVRRIASDLLNNPVQVNIGNTDQLVANKSITQ 378

Query: 460 TV-IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
            V +IP       ++++      G K    C        S  R   +   +L   + +S 
Sbjct: 379 HVEVIPHMEKSRRLDQILRSQDPGSKIIIFC--------STKRMCDQLARNLSRQYGASA 430

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG  S  +++SV++ F++G C +L+AT V   G+D+ D  +++  +        +H+
Sbjct: 431 --IHGDKSQSERDSVLNDFRSGRCPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHR 488

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           + GR GR     S    +    SK +   + +L+   
Sbjct: 489 I-GRTGRAGATGSAYTFFGDQDSKYASDLVKILEGAN 524


>gi|148701846|gb|EDL33793.1| mCG19408 [Mus musculus]
          Length = 615

 Score =  180 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 160/432 (37%), Gaps = 47/432 (10%)

Query: 212 PRKAKDFEWTSPAR-ERLAYDELLAGQIALLLMRKQFKKEIGIPI---NVEGKIAQKILR 267
           P+  K+F    P    R A +     +   + +R     +  +     N    +   I R
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVDTYRRSKEITVRGHNCPKPVLKFYEANFPANVMDVIAR 111

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------E 319
                PT  Q       L  +     M+ + Q   GSGKTL  L+     +         
Sbjct: 112 QNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIIHQPFLERG 165

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER       I 
Sbjct: 166 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEIC 221

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTAT 429
           I T     D ++  K        L+L   D     G + +++    Q       L+ +AT
Sbjct: 222 IATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 281

Query: 430 PIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGK 483
                R L    L D     I   E  A      I  V   + + +++I  ++ ++SE +
Sbjct: 282 WPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLILLMEEIMSEKE 341

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  + +       R   E    +      ++ I HG  S  +++ V+  FK+G   
Sbjct: 342 NKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLSEFKHGKAS 393

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    + P   K 
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQ 452

Query: 604 SYTRLSVLKNTE 615
           +   +SVL+   
Sbjct: 453 ASDLISVLREAN 464


>gi|330836276|ref|YP_004410917.1| DEAD/DEAH box helicase domain-containing protein [Spirochaeta
           coccoides DSM 17374]
 gi|329748179|gb|AEC01535.1| DEAD/DEAH box helicase domain protein [Spirochaeta coccoides DSM
           17374]
          Length = 634

 Score =  180 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 135/361 (37%), Gaps = 38/361 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            PT+ Q+  I  +L + +       I Q   G+GKT    I +   V+      QA+I+A
Sbjct: 27  EPTQIQKECIPLLLHEKT-----DVIGQARTGTGKTAAFGIPILETVDEHDSTVQALILA 81

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I     ++ + +  I G    + + + L R       I++GT    QD
Sbjct: 82  PTRELAVQVADEISSMRPSSGLSIAAIYGGASMSLQLRQLHR----GVQIVVGTPGRVQD 137

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            +    L        +L   DE    G  + ++     T             R L  ++ 
Sbjct: 138 HLDRGTLNLENLKFMVLDEADEMLDMGFIEDIENILSRTPAD---------KRMLCFSAT 188

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I  + ++   + P    ++  +  + +  ++   + E  K   +C  I+   +   
Sbjct: 189 MPAPIQNLAQRFM-KDPKIVRVVSQDMTNLLTNQVCYEVRESDKLEALCRVIDVAVDFYG 247

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +   +               +HG +S   +E++++ F+     +L+AT V   G
Sbjct: 248 LVFCRTKLQCDEVTEKLVARGQDADALHGDLSQKQREAILNRFRRRQLSVLVATDVAARG 307

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           ID+ D + +I  +      A +H++ GR GR     + +    P    +    +  + +T
Sbjct: 308 IDIPDLTHVINYSIPQNPEAYIHRI-GRTGRAGRSGTAVTFITPRE-YSKLKYIQRIAHT 365

Query: 615 E 615
           E
Sbjct: 366 E 366


>gi|74354729|gb|AAI03319.1| DDX5 protein [Bos taurus]
          Length = 671

 Score =  180 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 158/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 109 PKFEKNFYQEHPDLARRTAQEVETY--------RRSKEITVRGHNCPKPVLNFYEANFPA 160

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 161 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 214

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 215 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 273

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 274 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 330

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 331 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 390

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 391 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 442

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 443 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 501

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 502 FTPNNIKQVSDLISVLREAN 521


>gi|170747431|ref|YP_001753691.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653953|gb|ACB23008.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 527

 Score =  180 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 118/346 (34%), Gaps = 34/346 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  +L       R   +     G+GKT    + M   +E G       + +
Sbjct: 23  EPTPIQAEAIPHVLA------RRDVLGIAQTGTGKTAAFTLPMLTLLENGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   +Y  N ++ V +I G +  A +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVVENFDRYGTNHKLNVALIIGGVSFADQDAKLMR----GTDVLIATPGR 132

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRT- 434
             D  +  KL+L  V     DE  R      +   ++           L  +AT  P   
Sbjct: 133 LLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPEIE 192

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L    L +    ++    +    I   ++               L  G++         
Sbjct: 193 RLADMFLHNPQRVEVARPASTATTITQRLVATGAEGHAKRERLRGLIRGEE-----DLKN 247

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N +  V              A +HG M    + + +D F+NG   LL+A+ V   
Sbjct: 248 GIIFCNRKRDVALLQKSLVSHGFDAAALHGDMDQRARTTALDGFRNGETALLVASDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+   S +   +  H     +H++ GR GR     +   L  P 
Sbjct: 308 GLDIPAVSHVFNFDVPHHPEDYVHRI-GRTGRAGRSGTAYTLVAPD 352


>gi|310641357|ref|YP_003946115.1| dead/deah box helicase domain-containing protein [Paenibacillus
           polymyxa SC2]
 gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
           polymyxa SC2]
          Length = 525

 Score =  180 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 94/459 (20%), Positives = 171/459 (37%), Gaps = 68/459 (14%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           +  + F   T  Q  +I   LQ          I Q   G+GKT    I M   +   +  
Sbjct: 17  ITELGFEEATPIQSKSIPIALQGKD------MIGQAQTGTGKTAAFGIPMINKISKNDEK 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+IMAP   LA Q  E I+K ++   +    I G      + +AL++    +  IIIG
Sbjct: 71  IRALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKK----KPQIIIG 126

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I    + L  V        DE    G  + +           +L       +
Sbjct: 127 TPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDI---------QSILKQVPDERQ 177

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    +I ++ E+   + P    +IP      +I++  + + E +K   +   I+
Sbjct: 178 TMLFSATMPPNIKRLAEQFL-KDPEHVSVIPKQVSAPLIDQAYIEVPERQKFEALSRLID 236

Query: 494 EKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           +  V+      +    S   +HG +S   +++VM  F++G+  +L+A
Sbjct: 237 MESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVA 296

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN---- 603
           T V   G+DV   + ++  +      + +H++ GR GR  +         P    +    
Sbjct: 297 TDVAARGLDVSGVTHVVNFDLPQDPESYVHRI-GRTGRAGKEGEAWSFVTPREIDHLHFI 355

Query: 604 --------SYTRLSVLKNTEDGFL--IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
                       L  L    +G    IAE  L+  ++GE+     +      I   E +D
Sbjct: 356 ERVTRHRIPRKPLPTLAEALEGKQRIIAERLLEVVEKGEL-----NEYKGLAIQMLEQYD 410

Query: 654 --SLLEIA--------RKDAKHILTQDPDLTSVRGQSIR 682
              LL  A        R+ +  +  +DP     R   +R
Sbjct: 411 SVQLLSAALKLMTGEKREASIELTPEDPIRAKRRKPDVR 449


>gi|318040201|ref|ZP_07972157.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0101]
          Length = 537

 Score =  180 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 139/343 (40%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q++AI ++L           + Q   G+GKT    + M AA++      Q +++ 
Sbjct: 100 EPSPIQKAAIPELLLGRD------LVGQAQTGTGKTAAFALPMLAALDGQQRTPQVLVLT 153

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  K Y  N   + V  + G      +   L+R       I++GT     
Sbjct: 154 PTRELAIQVADAFKSYAANMPHLRVLPLYGGSDFRDQIVRLKR----GVQIVVGTPGRVM 209

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP--RTL 435
           D ++           L+L   DE  R G    ++    Q  +   V+L +AT  P  R +
Sbjct: 210 DHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVEWVLEQLPSQRQVVLFSATMPPEIRRI 269

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D     I  K A    I+   I +N   ++    +V+ SE K+   I  +    
Sbjct: 270 SHKYLNDPAEVTIKTKGADSSRIRQRFITVNGPQKLEALTRVLESETKEGVIIFART--- 326

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +++        E     +A+++G ++   +E  ++  KNGT  +L+AT V   G+
Sbjct: 327 -----KAITVTVAEALEAKGYDVAVLNGDVAQSQRERTIERLKNGTVDVLVATDVAARGL 381

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV   ++++  +      A +H++ GR GR       IL   P
Sbjct: 382 DVDRITLVVNYDIPFDSEAYVHRV-GRTGRAGRSGDAILFVTP 423


>gi|15889136|ref|NP_354817.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
 gi|15156946|gb|AAK87602.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 503

 Score =  180 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 78/365 (21%), Positives = 144/365 (39%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+    K  +  I Q   G+GKT   ++ M   +E G       + +
Sbjct: 24  TPTPIQAGAIPPALE----KRDICGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  +KY +N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLER----GADVLICTPGR 133

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--R 433
             D  +  KL++  V     DE  R      +   ++           L  +AT  P  +
Sbjct: 134 LLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLFFSATMPPEIQ 193

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVII-----PINRIDEVIERLKVVLSEGKKAYWI 488
            L    L +    ++ +  +  K +   I+        +   + + ++   +E K A   
Sbjct: 194 KLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLVRAEEAELKNAIIF 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         + V + F SL  H   S+  +HG M    + +++ +F++G   LL+A+
Sbjct: 254 CNR--------KKDVADLFRSLDRHG-FSVGALHGDMDQRSRTTMLQNFRDGQLTLLVAS 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S +   +        +H++ GR GR         L     +K      
Sbjct: 305 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGKAFTLVTKSDAKYLDAIE 363

Query: 609 SVLKN 613
            ++  
Sbjct: 364 KLIAE 368


>gi|119471733|ref|ZP_01614093.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Alteromonadales bacterium TW-7]
 gi|119445356|gb|EAW26644.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Alteromonadales bacterium TW-7]
          Length = 465

 Score =  180 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 71/384 (18%), Positives = 147/384 (38%), Gaps = 45/384 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +PT  Q  AI  I++      R   +     G+GKT    + +   +  G        +A
Sbjct: 23  TPTPIQAQAIPAIIE------RRDVMAAAQTGTGKTAGFTLPLIERLSTGPKAKSNHVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+AP   LA Q  E +++Y +++ +   ++ G +    + + L +       I++ T  
Sbjct: 77  LILAPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLRK----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  + ++++DE  R      +   ++       L+   P  R  ++ S
Sbjct: 133 RLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKR-------LIAKMPAKRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  +   N   + + +    + +G+K   +   I       
Sbjct: 186 ATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQSVYAVDKGRKTALLSHLIRSNDWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   +D FK+G  ++L+AT ++  
Sbjct: 246 VLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVATDIVAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+V+   ++  +  +     +H++ GR GR       I       + + Y     +  
Sbjct: 306 GLDIVELPHVVNYDLPNVYEDYVHRI-GRTGRAGASGHAISFVTVDDAVDLYGIERFIGE 364

Query: 614 T-----EDGFL----IAEEDLKQR 628
                 E+GF     +AE  L  R
Sbjct: 365 LIPRAEEEGFEPVNPVAERALDAR 388


>gi|294495760|ref|YP_003542253.1| DEAD/DEAH box helicase [Methanohalophilus mahii DSM 5219]
 gi|292666759|gb|ADE36608.1| DEAD/DEAH box helicase domain protein [Methanohalophilus mahii DSM
           5219]
          Length = 431

 Score =  180 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 78/375 (20%), Positives = 142/375 (37%), Gaps = 42/375 (11%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  ++ + ++ F  PT  Q  +I  +++          I Q   G+GKT    I     
Sbjct: 12  SKDIERAVEDMGFEEPTPIQSQSIPYLMEGKDV------IGQAQTGTGKTAAFGIPALEM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++      Q +++ P   LA Q  E + K  +     +  + G  P   + KAL R    
Sbjct: 66  LDVKSKKVQVLVLCPTRELANQVAEEMSKLAKYQNTKMLPVYGGQPIDRQIKALRR---- 121

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLM 426
             HI+IGT     D +Q   L L  V        DE    G ++ ++           L 
Sbjct: 122 GVHIVIGTPGRIMDHLQRKTLKLDDVKMVVLDEADEMLDMGFREDIEFI---------LS 172

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
            A    +T++ ++     I K+T+K      +   +     + + IE+    + +  K  
Sbjct: 173 RAPGKKQTVLFSATMPKPIIKLTKKYQQNPQMVKTVHKKLTVPQ-IEQYYFEVKDNAKTE 231

Query: 487 WICPQIE------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +C  I+           N +  V++     +     +  +HG M    +E VM +F+ G
Sbjct: 232 VLCRLIDIYNFKSSLVFCNTKKNVDKQVETLKARGYLVDGMHGDMRQAQRERVMSNFRKG 291

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             + L+AT V   GIDV     +   +      + +H++ GR GR  +    I       
Sbjct: 292 EIETLVATDVAARGIDVESIEAVFNYDIPQDEESYVHRI-GRTGRAGKEGVAITF---AF 347

Query: 601 SKNSYTRLSVLKNTE 615
            K+     ++ K+T 
Sbjct: 348 GKDIRKIKTIQKHTN 362


>gi|115437436|ref|NP_001043295.1| Os01g0549400 [Oryza sativa Japonica Group]
 gi|143455968|sp|Q5JKF2|RH40_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 40
 gi|57899403|dbj|BAD88050.1| putative ATP-dependent RNA helicase DB10 [Oryza sativa Japonica
           Group]
 gi|113532826|dbj|BAF05209.1| Os01g0549400 [Oryza sativa Japonica Group]
 gi|125570769|gb|EAZ12284.1| hypothetical protein OsJ_02174 [Oryza sativa Japonica Group]
          Length = 792

 Score =  180 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 137/367 (37%), Gaps = 44/367 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
           SPT  Q  +    LQ          +     GSGKTL  L+     ++       +G   
Sbjct: 172 SPTPIQAQSWPIALQCQDV------VAIAKTGSGKTLGYLLPGFMHIKRLQNNPRSGPTV 225

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  E   K+ ++++I    + G  P+  + + L+R       +++ T  
Sbjct: 226 LVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLDR----GVDVVVATPG 281

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT 434
              D ++  +        L+L   D     G   Q R  + +       L+ TAT     
Sbjct: 282 RLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTATWPKEV 341

Query: 435 L-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +L     + I  + E  A     + V +I  +     +E++      G K    
Sbjct: 342 RRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLEQILRSQDSGSKVLIF 401

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C           R   +   +L   F +S   IHG  S  ++E V+  F++G   +L+AT
Sbjct: 402 CTT--------KRMCDQLARTLTRQFGASA--IHGDKSQSEREKVLSHFRSGRSPILVAT 451

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D  ++I  +        +H++ GR GR          +    SK +   +
Sbjct: 452 DVAARGLDIKDIRVVINYDFPTGIEDYVHRI-GRTGRAGATGVAYTFFCDQDSKYAADLI 510

Query: 609 SVLKNTE 615
            +L+   
Sbjct: 511 KILEGAN 517


>gi|88706512|ref|ZP_01104216.1| ATP-dependent RNA helicase DbpA [Congregibacter litoralis KT71]
 gi|88699224|gb|EAQ96339.1| ATP-dependent RNA helicase DbpA [Congregibacter litoralis KT71]
          Length = 462

 Score =  180 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 86/452 (19%), Positives = 168/452 (37%), Gaps = 48/452 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q  +I  +LQ          I +   GSGKT    I +   +     G
Sbjct: 19  LAALGYEHMTPVQAQSIPLLLQGKDV------IARARTGSGKTAAFGIGLLQTINPRFFG 72

Query: 322 GQAVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q   E  +  ++   I +  + G  P   +  +LE      AHI++
Sbjct: 73  VQALVLCPTRELAEQVSGELRRLASRMANIKLVTLCGGKPFGPQVGSLEH----GAHIVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    QD +    L L  + +        R+     A +   ++       +TL+ ++ 
Sbjct: 129 GTPGRIQDHLGRDTLKLDGL-KVLVLDEADRMLDMGFADSMEAIVAKTPRSRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
              +I K++     +  + TV   +   +EVIE+L   + + ++   +    E       
Sbjct: 188 YPENIRKMSASIQRQPSMVTVDEEVAHKEEVIEQLFYEVQKHERHTTLLALFEHYTPANA 247

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +   S+   +      IHG +   +++ V+  F N +C +L+AT V   G
Sbjct: 248 VVFCNTKKQCDEVASVLRDYDIEARAIHGDLDQRERDQVLVQFANNSCPVLVATDVAARG 307

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+   +++I           +H++ GR GR  E    + +  P  +             
Sbjct: 308 LDIKSLAMVINYELPRDPEVYVHRI-GRTGRAGETGLAMSIVIPSETHRISKIEEFQSQP 366

Query: 615 EDGFLIAEEDL--------------------KQRKEGEILG--IKQSGMPKFLIAQPELH 652
                +   D                     ++ + G+ILG     +G+    I +  + 
Sbjct: 367 CACDTLPSLDRNPNYELMAPMVTIQLDAGRKQKLRPGDILGALTGDAGLEGSQIGKIAIF 426

Query: 653 DS--LLEIARKDAKHILTQDPDLTSVRGQSIR 682
           D    + I R   +  +    +   ++G+SIR
Sbjct: 427 DQWSFVAIERAALRQAMNYLAN-GKIKGRSIR 457


>gi|209549507|ref|YP_002281424.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535263|gb|ACI55198.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 505

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 80/363 (22%), Positives = 141/363 (38%), Gaps = 42/363 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI   L+      R         G+GKT   ++ M + +E G       + +I
Sbjct: 25  PTPIQAGAIPFALE------RRDICGIAQTGTGKTASFVLPMLSLLEKGRARARMPRTLI 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  +KY +N ++ V ++ G +    + + LER     A ++I T    
Sbjct: 79  LEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER----GADVLICTPGRL 134

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--RT 434
            D  +  KL++  V     DE  R      +   ++           L  +AT  P  + 
Sbjct: 135 LDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLFFSATMPPEIQK 194

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSEGKKAYWICP 490
           L    L + +  ++ +  +  K +    +  +  D     V+  L    +E K A   C 
Sbjct: 195 LADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQTELKNAIIFCN 254

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         + V + F SL  H   S+  +HG M    +   + SF++G  +LL+A+ V
Sbjct: 255 R--------KKDVADLFRSLERHG-FSVGALHGDMDQRSRTMTLQSFRDGNLQLLVASDV 305

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D S +   +        +H++ GR GR     +   L     SK       +
Sbjct: 306 AARGLDIPDVSHVFNFDVPIHSEDYVHRI-GRTGRAGRSGASFTLVTKRDSKFVDAIEKL 364

Query: 611 LKN 613
           +  
Sbjct: 365 IGE 367


>gi|190891965|ref|YP_001978507.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
 gi|190697244|gb|ACE91329.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
          Length = 527

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 78/363 (21%), Positives = 143/363 (39%), Gaps = 42/363 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI   L+      R         G+GKT   ++ M + +E G       + +I
Sbjct: 47  PTPIQAGAIPFALE------RRDICGIAQTGTGKTASFVLPMLSLLEKGRARARMPRTLI 100

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  +KY +N ++ V ++ G +    + + LER     A ++I T    
Sbjct: 101 LEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER----GADVLICTPGRL 156

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIPRT 434
            D  +  KL++  V     DE  R      +   ++           L  +AT  P  + 
Sbjct: 157 LDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSATMPPEIQK 216

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSEGKKAYWICP 490
           L    L + +  ++ +  +  K +    +  +  D     V+  L    +E K A   C 
Sbjct: 217 LADRFLQNPERIEVAKPASTAKTVTQRFVASHSKDYEKRAVLRELVRAQTELKNAIIFCN 276

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         + V + F SL  H   S+  +HG M    + +++ +F++G  +LL+A+ V
Sbjct: 277 R--------KKDVADLFRSLERHG-FSVGALHGDMDQRSRTTMLQNFRDGNLQLLVASDV 327

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D S +   +        +H++ GR GR     +   L     +K       +
Sbjct: 328 AARGLDIPDVSHVFNFDVPIHSEDYVHRI-GRTGRAGRSGAAFTLVTKRDTKFVDAIEKL 386

Query: 611 LKN 613
           +  
Sbjct: 387 IGE 389


>gi|289663283|ref|ZP_06484864.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 640

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 93/454 (20%), Positives = 163/454 (35%), Gaps = 53/454 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q + I  +L           + Q   G+GKT    + + +  +      QA+++A
Sbjct: 31  SPSPIQAATIPALLSGRDV------LGQAQTGTGKTAAFALPVLSNADLNQLKPQALVLA 84

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY +      V  + G  P A +  AL+R      H+++GT     
Sbjct: 85  PTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR----GVHVVVGTPGRVI 140

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP--RTL 435
           D +        Q   L+L   DE  R G    ++  L +      V L +AT  P  R +
Sbjct: 141 DHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPPAIRRI 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E      I  +    
Sbjct: 201 AQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFART--- 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E      +    + A I+G M    +E  +   K+G   +L+AT V   G+
Sbjct: 258 -----KAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGL 312

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P       +     +   
Sbjct: 313 DVERVSHVLNYDIPYDTESYVHRI-GRTGRAGRNGDAILFVTPREKGMLRSIERATRQPI 371

Query: 616 DGFLIAEED--LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE------------IARK 661
           +   +   D     R    +  I +S        Q +++  LL+            IA  
Sbjct: 372 EEMQLPSVDAVNDTRVARFMTRITES----LAGGQIDMYRDLLQRYETENNVPAIDIAAA 427

Query: 662 DAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
            AK +    P L +   +  R      + NE   
Sbjct: 428 MAKLLQGDSPFLLTPPVRGAREEFAPRERNERAD 461


>gi|307352826|ref|YP_003893877.1| DEAD/DEAH box helicase domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307156059|gb|ADN35439.1| DEAD/DEAH box helicase domain protein [Methanoplanus petrolearius
           DSM 11571]
          Length = 536

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 78/368 (21%), Positives = 139/368 (37%), Gaps = 23/368 (6%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N+  +I + I       PT  Q+ +I  IL             Q   G+GKT    I +
Sbjct: 10  LNISPEILRAIEDMGFEEPTPIQQRSIPLILSGRDVTG------QAQTGTGKTAAFAIPL 63

Query: 315 AAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALER 370
              +E      Q+++++P   L  Q  E   +  +  + I V  + G      +   L++
Sbjct: 64  IEKIEPEKCSVQSIVLSPTRELTIQISEEFNRLLKYRKDIRVLPVYGGQAIERQLHELKK 123

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
                 HIIIGT     D ++   L L  +         Q L++  +     +L   A  
Sbjct: 124 ----GVHIIIGTPGRVMDHMKRGTLSLSGIKTVVLDEADQMLEMGFREDMEEIL-SKAPG 178

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +T++ ++     I KI+ K   +KP    I P      +IE+  + + E  K   +C 
Sbjct: 179 ERQTILFSATMPKPILKIS-KSFQKKPEFVTINPGQLTVPLIEQKYLEVREKDKLEVLCR 237

Query: 491 QIE------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            I+           N +  V+  + +          +HG M    ++ VM  F++G+  +
Sbjct: 238 LIDINSSDLSMIFCNTKKAVDELSEMLRSRGYFAEGLHGDMKQQQRDRVMSRFRSGSIDI 297

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   GID+ D  ++   +        +H++ GR GR  +         P      
Sbjct: 298 LIATDVAARGIDIDDIDVVYNYDVPQDVEYYIHRI-GRTGRAGKSGMSYTFVSPKEIYKL 356

Query: 605 YTRLSVLK 612
                + K
Sbjct: 357 RMIKKIAK 364


>gi|291389880|ref|XP_002711450.1| PREDICTED: DEAD box polypeptide 17 [Oryctolagus cuniculus]
          Length = 835

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 88/459 (19%), Positives = 161/459 (35%), Gaps = 61/459 (13%)

Query: 194 LQKKSFPS---IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF--- 247
           L+K   P      + +++   P+  K+F    P   RL        ++  L  +K+    
Sbjct: 211 LKKFGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVR 265

Query: 248 ----KKEIGIPI---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
                 +        N    +   ++      PT  Q       L        M+ I Q 
Sbjct: 266 GGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ- 320

Query: 301 DVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
             GSGKTL  L+     +          G   +++AP   LAQQ  +    Y + +++  
Sbjct: 321 -TGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKS 379

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQH 404
             I G  P+  + + LER       I I T     D ++  K        L+L   D   
Sbjct: 380 TCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRML 435

Query: 405 RFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK-- 456
             G + +++    Q       L+ +AT       L      D ++I     E  A     
Sbjct: 436 DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNIL 495

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I  V +   +  ++I+ ++ +++E +    I            +   +           
Sbjct: 496 QIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGW 547

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG  S  +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +
Sbjct: 548 PAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYV 607

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           H++ GR  R     +    + P   K +   + VL+   
Sbjct: 608 HRI-GRTARSTNKGTAYTFFTPGNLKQARELIKVLEEAN 645


>gi|325293235|ref|YP_004279099.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
 gi|325061088|gb|ADY64779.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
          Length = 533

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 78/365 (21%), Positives = 144/365 (39%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+    K  +  I Q   G+GKT   ++ M   +E G       + +
Sbjct: 53  TPTPIQAGAIPPALE----KRDICGIAQ--TGTGKTASFVLPMLTLLEKGRARARMPRTL 106

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  +KY +N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 107 ILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLER----GADVLICTPGR 162

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAP-----HVLLMTATPIP--R 433
             D  +  KL++  V     DE  R      +   ++           L  +AT  P  +
Sbjct: 163 LLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLFFSATMPPEIQ 222

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVII-----PINRIDEVIERLKVVLSEGKKAYWI 488
            L    L +    ++ +  +  K +   I+        +   + + ++   +E K A   
Sbjct: 223 KLADRFLQNPTRIEVAKPSSTAKTVTQRIVASHNKDYEKRAVLRDLVRAEEAELKNAIIF 282

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         + V + F SL  H   S+  +HG M    + +++ +F++G   LL+A+
Sbjct: 283 CNR--------KKDVADLFRSLDRHG-FSVGALHGDMDQRSRTTMLQNFRDGQLTLLVAS 333

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S +   +        +H++ GR GR         L     +K      
Sbjct: 334 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGKAFTLVTKSDAKYLDAIE 392

Query: 609 SVLKN 613
            ++  
Sbjct: 393 KLITE 397


>gi|45382259|ref|NP_990158.1| probable ATP-dependent RNA helicase DDX5 [Gallus gallus]
 gi|5114446|gb|AAD40318.1|AF158370_1 DEAD-box RNA helicase [Gallus gallus]
          Length = 595

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 161/432 (37%), Gaps = 47/432 (10%)

Query: 212 PRKAKDFEWTSPAR-ERLAYDELLAGQIALLLMRKQFKKEIGIPI---NVEGKIAQKILR 267
           P+  K+F    P    R A +         + +R     +  I     N    + + I R
Sbjct: 40  PKFEKNFYQEHPDVVRRTAQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQR 99

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------- 319
                PT  Q       L  +     M+ + Q   GSGKTL  L+     +         
Sbjct: 100 QNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHINHQPFLERG 153

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G   +++AP   LAQQ  +   +Y++  ++    I G  P+  + + LER       I 
Sbjct: 154 DGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLER----GVEIC 209

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTAT 429
           I T     D ++  K        L+L   D     G + +++    Q       L+ +AT
Sbjct: 210 IATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 269

Query: 430 PIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGK 483
                R L    L +     I   E  A      I  V   + + D++I  ++ ++SE +
Sbjct: 270 WPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKE 329

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  + +       R   +    +      ++ I HG  S  +++ V++ FK+G   
Sbjct: 330 NKTIVFVETK-------RRCDDLTRKMRRDGWPAMGI-HGDKSQQERDWVLNEFKHGKAP 381

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    + P   K 
Sbjct: 382 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQ 440

Query: 604 SYTRLSVLKNTE 615
               +SVL+   
Sbjct: 441 VNDLISVLREAN 452


>gi|222640112|gb|EEE68244.1| hypothetical protein OsJ_26445 [Oryza sativa Japonica Group]
          Length = 2897

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 137/366 (37%), Gaps = 44/366 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQAV 325
           PT  Q       LQ+         +     GSGKTL  LI     +         G   +
Sbjct: 626 PTPIQAQTWPVALQNRD------IVAIAKTGSGKTLGYLIPAFIHLRRYQNNPMLGPTVL 679

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  +   K+ +++++    + G   +  + + LER     A I++ T   
Sbjct: 680 VLAPTRELASQIQDEAVKFGRSSRVSCTCLYGGTSKGLQLRELER----GADIVVATPGR 735

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTL 435
             D ++  K        L+L   D     G + +++    +       L+ TAT      
Sbjct: 736 LNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNRQTLMYTATWPKEVT 795

Query: 436 -----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWIC 489
                +L     ++I  I E  A +   + V ++P       +E++      G K    C
Sbjct: 796 KIAGDLLKDPVQVNIGSIDELVANKSITQYVEVVPPLDKQRRLEQILRAQERGSKVIIFC 855

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   S  +   +    +   F +  A IHG  S  ++++V++ F+ G   +L+AT 
Sbjct: 856 --------STKKMCDQLARDIGRSFGA--ASIHGDKSQAERDNVLNQFRTGRAPILVATD 905

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D  ++I  +        +H++ GR GR          +     K +   + 
Sbjct: 906 VAARGLDIKDIRVVINYDFPTGIEDYVHRI-GRTGRAGATGVSYTFFSEQDWKYAGDLVK 964

Query: 610 VLKNTE 615
           VL+   
Sbjct: 965 VLEGAN 970


>gi|218190304|gb|EEC72731.1| hypothetical protein OsI_06346 [Oryza sativa Indica Group]
          Length = 1382

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 137/366 (37%), Gaps = 44/366 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQAV 325
           PT  Q       LQ+         +     GSGKTL  LI     +         G   +
Sbjct: 626 PTPIQAQTWPVALQNRD------IVAIAKTGSGKTLGYLIPAFIHLRRYQNNPMLGPTVL 679

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  +   K+ +++++    + G   +  + + LER     A I++ T   
Sbjct: 680 VLAPTRELASQIQDEAVKFGRSSRVSCTCLYGGTSKGLQLRELER----GADIVVATPGR 735

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTL 435
             D ++  K        L+L   D     G + +++    +       L+ TAT      
Sbjct: 736 LNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNRQTLMYTATWPKEVT 795

Query: 436 -----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWIC 489
                +L     ++I  I E  A +   + V ++P       +E++      G K    C
Sbjct: 796 KIAGDLLKDPVQVNIGSIDELVANKSITQYVEVVPPLDKQRRLEQILRAQERGSKVIIFC 855

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   S  +   +    +   F +  A IHG  S  ++++V++ F+ G   +L+AT 
Sbjct: 856 --------STKKMCDQLARDIGRSFGA--ASIHGDKSQAERDNVLNQFRTGRAPILVATD 905

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D  ++I  +        +H++ GR GR          +     K +   + 
Sbjct: 906 VAARGLDIKDIRVVINYDFPTGIEDYVHRI-GRTGRAGATGVSYTFFSEQDWKYAGDLVK 964

Query: 610 VLKNTE 615
           VL+   
Sbjct: 965 VLEGAN 970


>gi|297612409|ref|NP_001068490.2| Os11g0689400 [Oryza sativa Japonica Group]
 gi|77552592|gb|ABA95389.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
 gi|255680379|dbj|BAF28853.2| Os11g0689400 [Oryza sativa Japonica Group]
          Length = 1398

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 137/366 (37%), Gaps = 44/366 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQAV 325
           PT  Q       LQ+         +     GSGKTL  LI     +         G   +
Sbjct: 627 PTPIQAQTWPVALQNRD------IVAIAKTGSGKTLGYLIPAFIHLRRYQNNPMLGPTVL 680

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  +   K+ +++++    + G   +  + + LER     A I++ T   
Sbjct: 681 VLAPTRELASQIQDEAVKFGRSSRVSCTCLYGGTSKGLQLRELER----GADIVVATPGR 736

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTL 435
             D ++  K        L+L   D     G + +++    +       L+ TAT      
Sbjct: 737 LNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNRQTLMYTATWPKEVT 796

Query: 436 -----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWIC 489
                +L     ++I  I E  A +   + V ++P       +E++      G K    C
Sbjct: 797 KIAGDLLKDPVQVNIGSIDELVANKSITQYVEVVPPLDKQRRLEQILRAQERGSKVIIFC 856

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   S  +   +    +   F +  A IHG  S  ++++V++ F+ G   +L+AT 
Sbjct: 857 --------STKKMCDQLARDIGRSFGA--ASIHGDKSQAERDNVLNQFRTGRAPILVATD 906

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D  ++I  +        +H++ GR GR          +     K +   + 
Sbjct: 907 VAARGLDIKDIRVVINYDFPTGIEDYVHRI-GRTGRAGATGVSYTFFSEQDWKYAGDLVK 965

Query: 610 VLKNTE 615
           VL+   
Sbjct: 966 VLEGAN 971


>gi|42573778|ref|NP_974985.1| ethylene-responsive DEAD box RNA helicase, putative (RH30)
           [Arabidopsis thaliana]
 gi|108861888|sp|Q8W4R3|RH30_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 30
 gi|110741550|dbj|BAE98724.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|332010323|gb|AED97706.1| DEAD-box ATP-dependent RNA helicase 30 [Arabidopsis thaliana]
          Length = 591

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 79/369 (21%), Positives = 133/369 (36%), Gaps = 38/369 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------ 318
           +  + F  PT  Q       L+          I   + GSGKTL  L+     V      
Sbjct: 180 IAKLGFTEPTPIQAQGWPMALKGRD------LIGIAETGSGKTLAYLLPALVHVSAQPRL 233

Query: 319 --EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
             + G   +I+AP   LA Q  E  +K+   + +    I G  P+  + + L R      
Sbjct: 234 GQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRR----GV 289

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLM 426
            I+I T     D ++           L+L   D     G + +++    Q       LL 
Sbjct: 290 EIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLW 349

Query: 427 TATPIPR--TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +AT      TL    L D   + I             +I I    E   RL  +L +   
Sbjct: 350 SATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMD 409

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              I   +E K     R   +    L      ++AI HG  +  +++ V+  FK+G   +
Sbjct: 410 GSKILIFVETK-----RGCDQVTRQLRMDGWPALAI-HGDKTQSERDRVLAEFKSGRSPI 463

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           + AT V   G+DV D   ++  +  +     +H++ GR GR          +    +K +
Sbjct: 464 MTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRI-GRTGRAGAKGMAFTFFTHDNAKFA 522

Query: 605 YTRLSVLKN 613
              + +L+ 
Sbjct: 523 RELVKILQE 531


>gi|168038086|ref|XP_001771533.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677260|gb|EDQ63733.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 684

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 147/388 (37%), Gaps = 46/388 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  +    +Q+         +     GSGKTL  LI     +E        G   
Sbjct: 172 SPTPIQAQSWPIAMQNRD------IVAIAKTGSGKTLGYLIPAFLHLERHRNNSRLGPTV 225

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  +   K+ ++++I    + G  P+  + + +ER     A I+I T  
Sbjct: 226 LVLAPTRELATQIQDECVKFGRSSRITSTCVYGGAPKVPQLRDIER----GADIVIATPG 281

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRT 434
              D ++  +        L+L   D     G + +++    +  +    L+ TAT     
Sbjct: 282 RLNDFLEVKRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVNEIPSRRQTLMYTATWPKEV 341

Query: 435 L-----VLTSLGDIDISKITEKPAGRKPIKTV--IIPINRIDEVIERLKVVLSEGKKAYW 487
                 +L +   ++I    E  A +   + V  ++P  +    +E++      G K   
Sbjct: 342 RKIAGDLLINPVQVNIGNTDELAANKSITQNVEVVVPYEK-QRRLEQILRSQEPGSKIII 400

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C        S  R       +L   F +  A IHG  S  +++ V+  F+ G   +L+A
Sbjct: 401 FC--------STKRMCDTLSRNLGRDFGA--AAIHGDKSQSERDFVLSQFRTGRTPILVA 450

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+ D  +++  +        +H++ GR GR          +     K +   
Sbjct: 451 TDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI-GRTGRAGATGLAYTFFSEQDGKYAKEL 509

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           + VL+          +D+  R  G   G
Sbjct: 510 IKVLEGANQKVPPELKDIASRGGGMFKG 537


>gi|157412006|gb|ABV54629.1| RecG [Enterococcus faecium]
          Length = 193

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 78/194 (40%), Positives = 132/194 (68%), Gaps = 3/194 (1%)

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
            G++D+S I E PAGR PI+T  +   ++D V++  +  L+ G + Y ICP IEE +  +
Sbjct: 1   YGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKELARGHQMYVICPLIEESEALD 60

Query: 500 FRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            ++ VE +  L E F     + ++HG+M + +KE +M++FK+   ++L++TTVIEVG++V
Sbjct: 61  VKNAVEVYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFKDNQMQILVSTTVIEVGVNV 120

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P  ++    R+ ++  T +G
Sbjct: 121 PNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANPK-NELGVERMKIMTETTNG 179

Query: 618 FLIAEEDLKQRKEG 631
           F+++E+DL+ R  G
Sbjct: 180 FVLSEKDLEIRGPG 193


>gi|124026185|ref|YP_001015301.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           NATL1A]
 gi|123961253|gb|ABM76036.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           NATL1A]
          Length = 589

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 159/443 (35%), Gaps = 49/443 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N   ++ Q I      SPT  Q++AI ++L           + Q   G+GKT    + +
Sbjct: 41  FNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRD------LVGQAQTGTGKTAAFALPI 94

Query: 315 AAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALER 370
              ++      Q +++AP   LA Q  E  + Y+  +    V  I G     ++   L R
Sbjct: 95  LERLKKNVGHPQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINTLRR 154

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPH 422
                  +++GT     D ++   L        +L   DE  R G    ++         
Sbjct: 155 ----GVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWI------- 203

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
              +   P  R LVL S       +   K     P +  I      + +I +  + +   
Sbjct: 204 ---LEQLPEERQLVLFSATMPSEIRRLSKKYLNSPAEITIKATELKERLIRQRYISVQNV 260

Query: 483 KKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            K   +   +E   E         +++        E +  ++A+++G +    +E  ++ 
Sbjct: 261 YKVNALQRVLEAVSEEGVIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVER 320

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            + G+  +L+AT V   G+DV    ++I  +      A +H++ GR GR       IL  
Sbjct: 321 LRQGSINILVATDVAARGLDVDRIGLVINYDMPFDREAYVHRI-GRTGRAGRNGEAILFV 379

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH---- 652
           +P            +    +   I + DL        +   Q+       A  E      
Sbjct: 380 NPRERSFLSNLERAVGQPIEKMDIPDNDLINN---NRIKKLQA--KLIKAASTERDNPEE 434

Query: 653 DSLLEIARKDAKHILTQDP-DLT 674
            ++LE   K+ +  L  DP DLT
Sbjct: 435 ANILEELIKNVEKELDIDPKDLT 457


>gi|148255365|ref|YP_001239950.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
 gi|146407538|gb|ABQ36044.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
          Length = 478

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 73/365 (20%), Positives = 138/365 (37%), Gaps = 42/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI  +L       R   +     G+GKT   ++ M   +E G       + +
Sbjct: 23  TPTPIQEQAIPHVLA------RRDVLGIAQTGTGKTAAFVLPMLTILEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   +Y    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDTKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKL-----ILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--R 433
             D  +   L      L+++DE  R      +   ++           L  TAT  P  R
Sbjct: 133 LLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPPEIR 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIP----INRIDEVIERLKVVLSEGKKAYWIC 489
            +  T L +    +++        +  + +P     ++  EV+ +L     + K A   C
Sbjct: 193 RVTETFLHNPQKVEVSRPATTAVTVTQLQVPGGREAHQKREVLRKLLREAKDLKNAIIFC 252

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +  V   +   +    S+  +HG M    + + +D F+ G   LL+A+ 
Sbjct: 253 NR---------KRDVAILHKSLQKHGFSVCALHGDMDQSARMAALDQFRKGELPLLVASD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ + S +   +  H     +H++ GR GR     + I +  P   K+      
Sbjct: 304 VAARGLDIPEVSHVFNFDVPHHSDDYVHRI-GRTGRAGRTGTAISIVSPADQKSITAIEK 362

Query: 610 VLKNT 614
           ++  +
Sbjct: 363 LIGQS 367


>gi|86357880|ref|YP_469772.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42]
 gi|86281982|gb|ABC91045.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42]
          Length = 527

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 77/363 (21%), Positives = 141/363 (38%), Gaps = 42/363 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI   L+      R         G+GKT   ++ M + +E G       + +I
Sbjct: 47  PTPIQAGAIPFALE------RRDICGIAQTGTGKTASFVLPMLSLLEKGRARARMPRTLI 100

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  +KY +N ++ V ++ G +    + + LER     A ++I T    
Sbjct: 101 LEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER----GADVLICTPGRL 156

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIPRT 434
            D  +  KL++  V     DE  R      +   ++           L  +AT  P  + 
Sbjct: 157 LDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSATMPPEIQK 216

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSEGKKAYWICP 490
           L    L + +  ++    +  K +    +  +  D     V+  L    +E K A   C 
Sbjct: 217 LADRFLQNPERIEVARPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQTELKNAIIFCN 276

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         + V + F SL  H   ++  +HG M    +  ++ +F++G  +LL+A+ V
Sbjct: 277 R--------KKDVADLFRSLERHG-FNVGALHGDMDQRSRTMMLQNFRDGNLQLLVASDV 327

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D S +   +        +H++ GR GR     +   L     +K       +
Sbjct: 328 AARGLDIPDVSHVFNFDVPIHSEDYVHRI-GRTGRAGRSGAAFTLVTKRDTKFVDAIEKL 386

Query: 611 LKN 613
           +  
Sbjct: 387 IGE 389


>gi|15231074|ref|NP_191416.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75335836|sp|Q9M2F9|RH52_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 52
 gi|6735374|emb|CAB68195.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|15146288|gb|AAK83627.1| AT3g58570/F14P22_160 [Arabidopsis thaliana]
 gi|21593710|gb|AAM65677.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|27363456|gb|AAO11647.1| At3g58570/F14P22_160 [Arabidopsis thaliana]
 gi|332646279|gb|AEE79800.1| DEAD-box ATP-dependent RNA helicase 52 [Arabidopsis thaliana]
          Length = 646

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 61/375 (16%), Positives = 132/375 (35%), Gaps = 45/375 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
            PT  Q +AI  +            +     GSGKT      + + +             
Sbjct: 168 KPTPVQRNAIPILAAGRD------LMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVR 221

Query: 322 ---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                AVI++P   LA Q ++  +K++  T + V +  G  P   + + LER       I
Sbjct: 222 GVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELER----GVDI 277

Query: 379 IIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T     D ++  ++ L +V     DE  R          Q       + M    + +
Sbjct: 278 LVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEP--QIRKIVQQMDMPPPGVRQ 335

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    +I ++         I   +  +    ++I +    + +  K   +   + 
Sbjct: 336 TMLFSATFPREIQRLASDFL-SNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLH 394

Query: 494 EKKES-------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            ++E+               +   +   +           IHG  S  ++E  + SFK G
Sbjct: 395 AQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTG 454

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+D+   + ++  +  +     +H++ GR GR          ++   
Sbjct: 455 RTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI-GRTGRAGNSGLATAFFNDNN 513

Query: 601 SKNSYTRLSVLKNTE 615
           +  +     +++   
Sbjct: 514 TTMAKPLAELMQEAN 528


>gi|326791603|ref|YP_004309424.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326542367|gb|ADZ84226.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 477

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 77/351 (21%), Positives = 136/351 (38%), Gaps = 35/351 (9%)

Query: 269 IPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQA 324
           + F  PT  QE  I ++L       +   I+Q   GSGKT    I +   V   E   QA
Sbjct: 19  LGFNKPTPVQERVIPEVL------RKQDLIVQSQTGSGKTAAFAIPICQEVIWEENKPQA 72

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E   +  +  +I    + G  P   ++K L +    + H+++GT  
Sbjct: 73  LVLTPTRELAIQVKEDFFQIGRFKRIKAVGLYGKAPFEVQQKELSQ----KTHVVVGTPG 128

Query: 385 LFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT--PIP 432
              D ++   L    +        DE  R G   ++   +         LL +AT  P  
Sbjct: 129 RVLDHLERGTLEASHISYLVIDEADEMLRMGFIDQVESIIAALPLNRVTLLFSATMAPHI 188

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           + L    L       IT   +    I+ + I  +   ++     V + E  ++  I    
Sbjct: 189 QQLCEKYLRTPKTIHITTDLSKPNNIEEIGIETHEQTKLAVLEAVTIVENPESCIIFCNR 248

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +E+ E  ++ + +            +  IHG M    + +VM+ F+ G  + L+AT V  
Sbjct: 249 KERVEMVWKRLND--------LNYGVGKIHGDMEQKQRFAVMEDFRKGRFRYLVATDVAA 300

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
            GID+   + +I  +        +H++ GR GR        +   P   +N
Sbjct: 301 RGIDIDHITHVINFDVPEQAENYVHRM-GRTGRAGRSGKTFIFIQPEDKRN 350


>gi|148228442|ref|NP_001082679.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Xenopus laevis]
 gi|51704021|gb|AAH80992.1| LOC398649 protein [Xenopus laevis]
          Length = 610

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 88/459 (19%), Positives = 159/459 (34%), Gaps = 64/459 (13%)

Query: 190 EKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ--- 246
             + L+KK +  + E       P+  K+F    P   R     +    +  L  +K+   
Sbjct: 25  PGERLRKKRW-DLNE------LPKFEKNFYTEHPEVAR-----MTQHDVEELRRKKEITI 72

Query: 247 ---FKKEIGIPINVEGKIAQKILRNIP--F-SPTKSQESAIKDILQDMSQKNRMLRILQG 300
                 +     +        +   +   F  PT  Q       L        M+ I Q 
Sbjct: 73  RGVNCPKPLYAFHQANFPQYVLDVLLDQRFKEPTPIQCQGFPLAL----SGRDMVGIAQ- 127

Query: 301 DVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
             GSGKTL  L+     +          G   +++AP   LAQQ  +    Y + +++  
Sbjct: 128 -TGSGKTLAYLLPAMVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKTSRLKS 186

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQH 404
             I G  P+  + + LER       I I T     D ++  K        L+L   D   
Sbjct: 187 TCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRML 242

Query: 405 RFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRKPI 458
             G + +++    Q       L+ +AT       L      D S+I     E  A    +
Sbjct: 243 DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYSQINIGNLELSANHNIL 302

Query: 459 KTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           + V +     +  ++I+ ++ +++E +    I            +   +           
Sbjct: 303 QIVDVCQESEKDHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDELTRRMRRDGW 354

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG  S  +++ V+  F+ G   +LIAT V   G+DV D   +I  +  +     +
Sbjct: 355 PAMCIHGDKSQQERDWVLCEFRTGKAPILIATDVASRGLDVEDIKFVINYDYPNSSEDYV 414

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           H++ GR  R     +    + P   K +   + VL+   
Sbjct: 415 HRI-GRTARSTNKGTAYTFFTPGNLKQARELVKVLEEAN 452


>gi|73969117|ref|XP_860802.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 14 [Canis
           familiaris]
          Length = 614

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 157/448 (35%), Gaps = 58/448 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 39  RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 93

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 147

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 148 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 207

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 208 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 263

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 264 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 323

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 324 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 375

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  
Sbjct: 376 PERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARST 434

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
              +    + P   K +   + VL+   
Sbjct: 435 NKGTAYTFFTPGNLKQARELIKVLEEAN 462


>gi|297817170|ref|XP_002876468.1| hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322306|gb|EFH52727.1| hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 639

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 61/375 (16%), Positives = 132/375 (35%), Gaps = 45/375 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
            PT  Q +AI  +            +     GSGKT      + + +             
Sbjct: 159 KPTPVQRNAIPILAAGRD------LMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVR 212

Query: 322 ---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                AVI++P   LA Q ++  +K++  T + V +  G  P   + + LER       I
Sbjct: 213 GVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELER----GVDI 268

Query: 379 IIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T     D ++  ++ L +V     DE  R          Q       + M    + +
Sbjct: 269 LVATPGRLNDLLERGRVSLQMVKFLALDEADRMLDMGFEP--QIRKIVQQMDMPPPGVRQ 326

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    +I ++         I   +  +    ++I +    + +  K   +   + 
Sbjct: 327 TMLFSATFPREIQRLASDFL-SNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLH 385

Query: 494 EKKES-------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            ++E+               +   +   +           IHG  S  ++E  + SFK G
Sbjct: 386 AQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTG 445

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+D+   + ++  +  +     +H++ GR GR          ++   
Sbjct: 446 RTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI-GRTGRAGNSGLATAFFNDNN 504

Query: 601 SKNSYTRLSVLKNTE 615
           +  +     +++   
Sbjct: 505 TSMAKPLAELMQEAN 519


>gi|229009737|ref|ZP_04166960.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
           2048]
 gi|229055077|ref|ZP_04195508.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
 gi|228721261|gb|EEL72786.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
 gi|228751532|gb|EEM01335.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
           2048]
          Length = 538

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 88/433 (20%), Positives = 160/433 (36%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTNKEAV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   I  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIIFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK GT ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMP-KFLIAQPELHDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +    L     + + +LE          A
Sbjct: 359 TKRKVDRMDAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|319404344|emb|CBI77941.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498]
          Length = 466

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 139/364 (38%), Gaps = 43/364 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q   I  ILQ    K  +L I Q   G+GKT   ++ M   +E G       + +I
Sbjct: 29  PTPIQSRTIPHILQ----KKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARIPRTLI 82

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   KY  N  + V ++ G +   H+ + LER     A ++I T    
Sbjct: 83  LEPTRELAAQVKENFDKYGVNHNLNVALLIGGVSFEHQDRKLER----GADVLIATPGRL 138

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPR--T 434
            D  +  KL+LV V     DE  R      +   ++           L  +AT  P    
Sbjct: 139 LDHFERGKLLLVGVEILVIDEADRMLNMGFIPDVERICKVTPFTRQTLFFSATMAPEIAQ 198

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIP-----INRIDEVIERLKVVLSEGKKAYWIC 489
           L    L      +ITE  +  K I   ++       ++   + E ++    E K A   C
Sbjct: 199 LTKQFLHSPVYIEITEASSTAKTITQRLVKSGSKSCDKKAVLKELIQNEGDELKNAIIFC 258

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         + + E F  L +H   S+  +HG M    + + + SFKN    LLIA+ 
Sbjct: 259 NR--------KKDISELFQYLIKH-NFSVGTLHGDMDQHSRTNTLASFKNNKFILLIASD 309

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+   S +   +        +H++ GR GR +       +      K       
Sbjct: 310 VAARGLDIPAVSHVFNYDVPTHAEDYIHRI-GRTGRAKRSGKAFTIVTKADEKYIRAIEE 368

Query: 610 VLKN 613
           + K 
Sbjct: 369 ISKE 372


>gi|331006491|ref|ZP_08329791.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
 gi|330419691|gb|EGG94057.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
          Length = 573

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 137/348 (39%), Gaps = 35/348 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  P+  Q ++I  I +          + Q   G+GKT    + + + ++     
Sbjct: 25  LVELGYETPSPIQAASIPIIQEGRD------LLGQAQTGTGKTAAFALPLLSKIDPTKKH 78

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++AP   LA Q  E  + Y+++    V  I G     ++ + L+R       II+G
Sbjct: 79  PQLLVLAPTRELAIQVAEAFQTYSRHMSCTVLPIYGGQSYDNQLRQLKR----GTQIIVG 134

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATA--PHVLLMTATPI 431
           T     D I+   L L  +        DE  R G    ++   + T     + L +AT  
Sbjct: 135 TPGRVMDHIRRKTLKLDQLEALVLDEADEMLRMGFIDDVEWILEHTPKSRQIALFSATMP 194

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                +    L +    KI  K +    I+     +NR  ++    +++  E      + 
Sbjct: 195 KEIKKVADKYLVNPKHIKIETKTSTATTIRQRFSIVNRNQKLDAFTRILEVEDFDGVIVF 254

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +        + +E    L      S A ++G +    +E++++  K GT  +LIAT 
Sbjct: 255 VRTK-------VATLELAEKLSARGH-SCAALNGDIPQNQRENIVEKLKRGTLDILIATD 306

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V+  G+DV   S +I  +      + +H++ GR GR       IL   
Sbjct: 307 VVARGLDVKRISHVINYDIPLDTESYVHRI-GRTGRAGRSGEAILFVT 353


>gi|126726299|ref|ZP_01742140.1| DEAD/DEAH box helicase [Rhodobacterales bacterium HTCC2150]
 gi|126704162|gb|EBA03254.1| DEAD/DEAH box helicase [Rhodobacterales bacterium HTCC2150]
          Length = 438

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 140/384 (36%), Gaps = 45/384 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            PT  Q  AI  IL        ++ + Q   G+GKT    + +   +        +   +
Sbjct: 18  DPTPIQSQAIPHILNG----RDIMGLAQ--TGTGKTAAFGLPILHHLWHVGTKPEDRSAR 71

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  E +  ++++T + V ++ G +    + K L++       +++ T 
Sbjct: 72  ALILAPTRELASQITENLLIFSRDTHLKVALVVGGVSINTQIKRLQK----GTDVLVATP 127

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +            L+L   D+    G    L+                   +T+
Sbjct: 128 GRLLDLLNRRAITLSDARYLVLDEADQMLDMGFIHDLRKISTHLPEE---------RQTM 178

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     + ++ E      P++  + P  +  + + +    + +G K   +   +   
Sbjct: 179 MFSATMPKLMGELAETYLN-SPLRVQVSPPGKAADKVTQEVHFMLQGDKGQHLKKLLGNH 237

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +E         +   E+          + A IHG  S   +   ++ FK+G  K+L+AT 
Sbjct: 238 REERALVFSRTKHGAEKLKKGLVAVGFAAASIHGNKSQGQRTRALEEFKSGEVKILVATD 297

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+     +   +  +     +H++ GR  R     + I    P           
Sbjct: 298 VAARGIDIPQVMYVYNYDLPNVPENYVHRI-GRTARAGAEGTAIAFCSPDEMGELRAIEK 356

Query: 610 VLKNT--EDGFLIAEEDLKQRKEG 631
           VLK+T         + D++ R  G
Sbjct: 357 VLKSTIKISHGKPWDGDIEGRGPG 380


>gi|163938237|ref|YP_001643121.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229131241|ref|ZP_04260147.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST196]
 gi|163860434|gb|ABY41493.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
 gi|228652232|gb|EEL08163.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST196]
          Length = 538

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 87/433 (20%), Positives = 159/433 (36%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTNKDAV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKLGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   I  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIIFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G  ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMP-KFLIAQPELHDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +    L     + + +LE          A
Sbjct: 359 TKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|326930919|ref|XP_003211585.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Meleagris
           gallopavo]
          Length = 597

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 161/432 (37%), Gaps = 47/432 (10%)

Query: 212 PRKAKDFEWTSPAR-ERLAYDELLAGQIALLLMRKQFKKEIGIPI---NVEGKIAQKILR 267
           P+  K+F    P    R A +         + +R     +  I     N    + + I R
Sbjct: 42  PKFEKNFYQEHPDVVRRTAQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQR 101

Query: 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------- 319
                PT  Q       L  +     M+ + Q   GSGKTL  L+     +         
Sbjct: 102 QNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHINHQPFLERG 155

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G   +++AP   LAQQ  +   +Y++  ++    I G  P+  + + LER       I 
Sbjct: 156 DGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLER----GVEIC 211

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTAT 429
           I T     D ++  K        L+L   D     G + +++    Q       L+ +AT
Sbjct: 212 IATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 271

Query: 430 PIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGK 483
                R L    L +     I   E  A      I  V   + + D++I  ++ ++SE +
Sbjct: 272 WPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKE 331

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  + +       R   +    +      ++ I HG  S  +++ V++ FK+G   
Sbjct: 332 NKTIVFVETK-------RRCDDLTRKMRRDGWPAMGI-HGDKSQQERDWVLNEFKHGKAP 383

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    + P   K 
Sbjct: 384 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQ 442

Query: 604 SYTRLSVLKNTE 615
               +SVL+   
Sbjct: 443 VNDLISVLREAN 454


>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii DSM
           519]
 gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii]
          Length = 515

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 88/422 (20%), Positives = 159/422 (37%), Gaps = 52/422 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SPT  QE  I   +Q +        I Q   G+GKT    I + + +E G    QA+I+A
Sbjct: 24  SPTPIQEQIIPLAMQGID------LIGQAQTGTGKTAAFGIPLLSKIEKGNKAVQALILA 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I +  +   +    I G      + + L++       I++ T   F D
Sbjct: 78  PTRELALQVSQEINRLAKYKNVEAIAIYGGEDIGKQIRGLKK----NPQIVVATPGRFMD 133

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--LV 436
            ++   + L  +        DE    G  + +   L +  +    LL +AT   R   + 
Sbjct: 134 HMRRNTINLANIQTVILDEADEMLSMGFIEDIETILQEVPSERQTLLFSATMPKRIQSVS 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              +       +  K      I+   + +   D+     +++          CP++    
Sbjct: 194 QKFMKSPQTVAVKNKTMTVDTIEQRYLDLKERDKFDALCRLM-------DIHCPELSIIF 246

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               R V E   +L       +  IHG M    +E V+  FK G+ K+L+AT V   G+D
Sbjct: 247 GRTKRRVDELSEALSIRGYD-VEGIHGDMKQERREKVLRRFKRGSIKILVATDVAARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   S +   +      + +H++ GR GR  +         P         L ++++T  
Sbjct: 306 ISGVSHVFNFDLPQDPESYVHRI-GRTGRAGQKGISFTFVTPRE----REYLELIEDTTK 360

Query: 617 GFLIAEE--------DLKQRKEG-EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
             ++ +         D + R+   +++GI +S     L    E    LLE    DA  ++
Sbjct: 361 SKMLKQHVPSIGDAKDARYRQAAQKLIGIAESAKTHDLE---EAAQKLLEE--YDAVKLV 415

Query: 668 TQ 669
           + 
Sbjct: 416 SA 417


>gi|227822081|ref|YP_002826052.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
 gi|227341081|gb|ACP25299.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
          Length = 501

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 142/365 (38%), Gaps = 42/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   LQ      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 24  TPTPIQAGAIPPALQ------RRDILGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY +N ++ + ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLER----GADVLICTPGR 133

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--R 433
             D  +  KL++  V     DE  R      +   ++           L  +AT  P  +
Sbjct: 134 LLDHFERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSATMPPEIQ 193

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSEGKKAYWIC 489
            L    L + +  ++    +    +    +  +  D     V+  L     E K A   C
Sbjct: 194 KLADRFLQNPERVEVARPASTANTVTQRFVAAHGKDYEKRAVLRDLIRAQGELKNAIIFC 253

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         + V E F SL  H   S+  +HG M    + +++ +FK+G  +LL+A+ 
Sbjct: 254 NR--------KKDVAELFRSLDRHG-FSVGALHGDMDQRSRMAMLANFKDGNIQLLVASD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D S +   +        +H++ GR GR     +   +     +K S     
Sbjct: 305 VAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGASFTIVTKRDTKFSDAIEK 363

Query: 610 VLKNT 614
           ++  T
Sbjct: 364 LIGQT 368


>gi|224141279|ref|XP_002324002.1| predicted protein [Populus trichocarpa]
 gi|222867004|gb|EEF04135.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 81/408 (19%), Positives = 151/408 (37%), Gaps = 48/408 (11%)

Query: 254 PINVEGKIAQKILRNI--PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
                G  ++ +   +   FS PT  Q  +    LQ          +     GSGKTL  
Sbjct: 155 SFEATGFPSEILKEVLKAGFSSPTPIQAQSWPVALQSRD------IVAVAKTGSGKTLGY 208

Query: 311 LIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           LI     ++        G   ++++P   LA Q  +   K+ ++++I    + G  P+  
Sbjct: 209 LIPGFIHLKRCRNDPQLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGP 268

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLK 413
           + K L+R     A I++ T     D ++  +        L+L   D     G   Q R  
Sbjct: 269 QLKELDR----GADIVVATPGRLNDILEMRRVSLNQVKYLVLDEADRMLDMGFEPQIRKI 324

Query: 414 LTQKATAPHVLLMTATPIPRTL-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINR 467
           + +       L+ TAT           +L +   ++I  I E  A +   + V ++    
Sbjct: 325 VKEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNIDELVANKSITQHVELLAPLE 384

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
               +E++      G K    C        S  +   +   +L   F +  A IHG  S 
Sbjct: 385 KHRRLEQILRSQEPGSKIIIFC--------STKKMCDQLARNLTRQFGA--AAIHGDKSQ 434

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V+  F+ G   +L+AT V   G+D+ D  +++  +        +H++ GR GR  
Sbjct: 435 SERDHVLSQFRTGRSPILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI-GRTGRAG 493

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
                   +    +K +   + VL+            +  R  G ++G
Sbjct: 494 ATGVAYTFFGDQDAKYASDLIKVLEGANQLVPPEIRAMASRGGG-VMG 540


>gi|195330652|ref|XP_002032017.1| GM26328 [Drosophila sechellia]
 gi|194120960|gb|EDW43003.1| GM26328 [Drosophila sechellia]
          Length = 797

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 69/390 (17%), Positives = 135/390 (34%), Gaps = 50/390 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  I+           +     GSGKT   L+ +   +             
Sbjct: 316 KPTPVQKHAIPIIINGRD------LMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTR 369

Query: 319 -----EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                +     +++AP   LA Q +E  KK+   +++   ++ G    + + + L+R   
Sbjct: 370 QYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDR--- 426

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+I+ T    +D I   K+ L  +     DE  R          Q       L M  
Sbjct: 427 -GCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEP--QIRRIVEQLNMPP 483

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++     I ++         I   +  +    E I +  + + E  K  ++
Sbjct: 484 TGQRQTLMFSATFPKQIQELASDFL-SNYIFLAVGRVGSTSENITQTILWVYEPDKRSYL 542

Query: 489 CPQIEEKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              +   ++                +   +            +  IHG  +  ++E  + 
Sbjct: 543 LDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALR 602

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G C +L+AT V   G+D+     +I  +        +H++ GR GR   +      
Sbjct: 603 CFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRI-GRTGRMGNLGVATSF 661

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           ++          L +L  T+       ED+
Sbjct: 662 FNEKNRNICSDLLELLIETKQEIPSFMEDM 691


>gi|72382486|ref|YP_291841.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Prochlorococcus marinus str. NATL2A]
 gi|72002336|gb|AAZ58138.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str.
           NATL2A]
          Length = 589

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 159/443 (35%), Gaps = 49/443 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N   ++ Q I      SPT  Q++AI ++L           + Q   G+GKT    + +
Sbjct: 41  FNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRD------LVGQAQTGTGKTAAFALPI 94

Query: 315 AAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALER 370
              ++      Q +++AP   LA Q  E  + Y+  +    V  I G     ++   L R
Sbjct: 95  LERLKKNVGHPQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINTLRR 154

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPH 422
                  +++GT     D ++   L        +L   DE  R G    ++         
Sbjct: 155 ----GVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWI------- 203

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
              +   P  R LVL S       +   K     P +  I      + +I +  + +   
Sbjct: 204 ---LEQLPEERQLVLFSATMPSEIRRLSKKYLNSPAEITIKATELKERLIRQRYISVQNV 260

Query: 483 KKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            K   +   +E   E         +++        E +  ++A+++G +    +E  ++ 
Sbjct: 261 YKVNALQRVLEAVSEEGVIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVER 320

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            + G+  +L+AT V   G+DV    ++I  +      A +H++ GR GR       IL  
Sbjct: 321 LRQGSINILVATDVAARGLDVDRIGLVINYDMPFDREAYVHRI-GRTGRAGRNGEAILFV 379

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH---- 652
           +P            +    +   I + DL        +   Q+       A  E      
Sbjct: 380 NPRERSFLSNLERAVGQPIEKMDIPDNDLINN---NRIKKLQA--KLIKAASTERDNPEE 434

Query: 653 DSLLEIARKDAKHILTQDP-DLT 674
            ++LE   K+ +  L  DP DLT
Sbjct: 435 ANILEELIKNVEKELDIDPKDLT 457


>gi|39935543|ref|NP_947819.1| ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009]
 gi|192291134|ref|YP_001991739.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39649396|emb|CAE27918.1| possible ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192284883|gb|ACF01264.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 472

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 132/364 (36%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           SPT  Q+ AI  +L       R   +     G+GKT   ++ M   +E G       + +
Sbjct: 23  SPTPIQQQAIPHVLA------RKDVLGIAQTGTGKTAAFVLPMLTMLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--R 433
             D  +   L+L  V     DE  R      +   ++           L  TAT     R
Sbjct: 133 LLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPTEIR 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG----KKAYWIC 489
            +  T L + +  ++++  +    +    +P  R           L  G    K A   C
Sbjct: 193 RITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRRLIRGATDLKNAIIFC 252

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +  V       +    S+  +HG M    + + +++F+ G   +L+A+ 
Sbjct: 253 NR---------KREVALLAKSLQRHGFSVGALHGDMDQTARTAALEAFRKGDLPILVASD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ + S +   +  H     +H++ GR GR     + + +  P   K+      
Sbjct: 304 VAARGLDIPEVSHVFNFDVPHHPDDYVHRI-GRTGRAGRTGTAVTIVAPSDQKSMAAVEK 362

Query: 610 VLKN 613
           ++  
Sbjct: 363 LIGQ 366


>gi|332533777|ref|ZP_08409633.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036708|gb|EGI73171.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 464

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 70/384 (18%), Positives = 146/384 (38%), Gaps = 45/384 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +PT  Q  AI  I++      R   +     G+GKT    + +   + +G        +A
Sbjct: 23  TPTPIQAQAIPAIIE------RRDVMAAAQTGTGKTAGFTLPLIERLSSGPKAKSNHVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +++Y +++ +   ++ G +    + + L +       I++ T  
Sbjct: 77  LILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRK----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  + ++++DE  R      +   ++       L+   P  R  ++ S
Sbjct: 133 RLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKR-------LIAKMPAKRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  +   N   + + +    + + +K   +   I       
Sbjct: 186 ATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKTRKTALLSHLIRTNDWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   +D FK+G  ++L+AT ++  
Sbjct: 246 VLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVATDIVAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+V+   ++  +  +     +H++ GR GR       I       + + Y     +  
Sbjct: 306 GLDIVELPHVVNYDLPNVYEDYVHRI-GRTGRAGATGHAISFVTVDDAVDLYGIERFIGE 364

Query: 614 T-----EDGFL----IAEEDLKQR 628
                 EDGF     +AE  L  R
Sbjct: 365 LIPRAEEDGFEPINPVAERALDAR 388


>gi|119580652|gb|EAW60248.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_h [Homo
           sapiens]
          Length = 547

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 76/368 (20%), Positives = 134/368 (36%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L        M+ I Q   GSGKTL  L+     +          G  
Sbjct: 11  EPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPI 64

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +    Y + +++    I G  P+  + + LER       I I T 
Sbjct: 65  CLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 120

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 121 GRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 180

Query: 434 TLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              L      D ++I     E  A      I  V +   +  ++I+ ++ +++E +    
Sbjct: 181 VRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTI 240

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            +   +               IHG  S  +++ V++ F++G   +LIA
Sbjct: 241 IFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 292

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +  +     +H++ GR  R     +    + P   K +   
Sbjct: 293 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQAREL 351

Query: 608 LSVLKNTE 615
           + VL+   
Sbjct: 352 IKVLEEAN 359


>gi|17985987|ref|NP_536783.1| belle [Drosophila melanogaster]
 gi|74947986|sp|Q9VHP0|DDX3_DROME RecName: Full=ATP-dependent RNA helicase bel; AltName: Full=Protein
           belle
 gi|7299061|gb|AAF54262.1| belle [Drosophila melanogaster]
          Length = 798

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 69/390 (17%), Positives = 135/390 (34%), Gaps = 50/390 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  I+           +     GSGKT   L+ +   +             
Sbjct: 317 KPTPVQKHAIPIIINGRD------LMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTR 370

Query: 319 -----EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                +     +++AP   LA Q +E  KK+   +++   ++ G    + + + L+R   
Sbjct: 371 QYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDR--- 427

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+I+ T    +D I   K+ L  +     DE  R          Q       L M  
Sbjct: 428 -GCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEP--QIRRIVEQLNMPP 484

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++     I ++         I   +  +    E I +  + + E  K  ++
Sbjct: 485 TGQRQTLMFSATFPKQIQELASDFL-SNYIFLAVGRVGSTSENITQTILWVYEPDKRSYL 543

Query: 489 CPQIEEKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              +   ++                +   +            +  IHG  +  ++E  + 
Sbjct: 544 LDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALR 603

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G C +L+AT V   G+D+     +I  +        +H++ GR GR   +      
Sbjct: 604 CFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRI-GRTGRMGNLGVATSF 662

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           ++          L +L  T+       ED+
Sbjct: 663 FNEKNRNICSDLLELLIETKQEIPSFMEDM 692


>gi|225456912|ref|XP_002277894.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 611

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/429 (20%), Positives = 150/429 (34%), Gaps = 49/429 (11%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI------- 265
              K+F   SP+ + ++  E     +     R+   +   +P  +               
Sbjct: 148 PFEKNFYIESPSVQAMSEQEA----MLYRARREITVEGYDVPKPIRHFQEANFPGYCLEV 203

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           +  + F  PT  Q       L+          I   + GSGKTL  L+     V A    
Sbjct: 204 IAKLGFVEPTPIQAQGWPMALKGRD------LIGIAETGSGKTLAYLLPALVHVSAQPPL 257

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G   +++AP   LA Q  E   K+   T+I    I G  P+  + + L+R      
Sbjct: 258 VRGEGPIVLVLAPTRELAVQIQEEALKFGSFTKIRSTCIYGGAPKGPQIRDLQR----GV 313

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLM 426
            I+I T     D ++           L+L   D     G   Q R  ++Q       L  
Sbjct: 314 EIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLYW 373

Query: 427 TATPIPR--TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +AT      TL    L +     I  +          ++ +    E   RL  +L E   
Sbjct: 374 SATWPREVETLARQFLRNPYKVIIGSQDLKANQSIQQVVEVVTETEKYNRLIRLLKEVMD 433

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              I   +E KK  +  +   R +            IHG  +  +++ V+  FK+G   +
Sbjct: 434 GSRILIFMETKKGCDQVTRQMRMDGWPS------LSIHGDKNQAERDWVLAEFKSGRSPI 487

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           + AT V   G+DV D   +I  +        +H++ GR GR     + I  +    +K +
Sbjct: 488 MTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRI-GRTGRAGAKGTAITFFTHSNAKFA 546

Query: 605 YTRLSVLKN 613
              + +L+ 
Sbjct: 547 RDLIKILQE 555


>gi|91976935|ref|YP_569594.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
 gi|91683391|gb|ABE39693.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
          Length = 500

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 133/350 (38%), Gaps = 42/350 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI  +L       R   +     G+GKT   ++ M   +E G       + +
Sbjct: 23  TPTPIQEQAIPHVLA------RRDVLGIAQTGTGKTAAFVLPMLTMLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKEQFDKYGAGQKLTVALLIGGVSFGDQDVKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--R 433
             D  +   L+L  V     DE  R      +   ++           L  TAT  P  R
Sbjct: 133 LLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFTATMPPEIR 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI----DEVIERLKVVLSEGKKAYWIC 489
            +  T L + +  ++++  +    +    +P  R      E + RL    ++ + A   C
Sbjct: 193 RITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRRLIRAATDLQNAIIFC 252

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +  V       +    S+  +HG M    + + +D F+ G   +L+A+ 
Sbjct: 253 NR---------KREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPILVASD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   G+D+ + S +   +  H     +H++ GR GR   + + I +  P 
Sbjct: 304 VAARGLDIPEVSHVFNFDVPHHPDDYVHRV-GRTGRAGRLGTAISIVAPS 352


>gi|312866818|ref|ZP_07727031.1| putative transcription-repair coupling factor [Streptococcus
           parasanguinis F0405]
 gi|311097601|gb|EFQ55832.1| putative transcription-repair coupling factor [Streptococcus
           parasanguinis F0405]
          Length = 764

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/211 (27%), Positives = 104/211 (49%), Gaps = 2/211 (0%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
           K  D  +    +      E +A  +  L    +  +  G   + + +  +   ++ P+  
Sbjct: 555 KLNDGRFQKTKQRVQTQVEDIADDLIKLYA--ERSQLEGFAYSSDDENQEAFEQDFPYIE 612

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGIL 333
           T  Q  +I++I +DM     M R+L GDVG GKT VA+ A   AV    Q  ++ P  +L
Sbjct: 613 TDDQLRSIEEIKKDMESNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVL 672

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQHY   K+  ++  + V +++    +A +++ LE++  G+  IIIGTH L    + + 
Sbjct: 673 AQQHYANFKERFESFAVEVAVLSRFQSKAEQKETLEKLKKGRVDIIIGTHRLLSKDVVFS 732

Query: 394 KLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
            L L+++DE+ RFGV+ +  L +       L
Sbjct: 733 DLGLIVIDEEQRFGVKHKETLKELKKRWMCL 763


>gi|316934368|ref|YP_004109350.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315602082|gb|ADU44617.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 469

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 132/364 (36%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           SPT  Q+ AI  +L       R   +     G+GKT   ++ M   +E G       + +
Sbjct: 23  SPTPIQQQAIPHVLA------RRDVLGIAQTGTGKTAAFVLPMLTLLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--R 433
             D  +   L+L  V     DE  R      +   ++           L  TAT     R
Sbjct: 133 LLDHTERGGLLLTGVEMLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPTEIR 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG----KKAYWIC 489
            +  T L + +  ++++  +    +    +P  R           L  G    K A   C
Sbjct: 193 RITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRHLIRGATDLKNAIIFC 252

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +  V       +    S+  +HG M    + + +++F+ G   +L+A+ 
Sbjct: 253 NR---------KREVALLARSLQRHGFSVGALHGDMDQTARMAALEAFRKGELPILVASD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ + S +   +  H     +H++ GR GR     + + +  P   K+      
Sbjct: 304 VAARGLDIPEVSHVFNFDVPHHPDDYVHRI-GRTGRAGRAGTALTIVAPSDQKSMAAIEK 362

Query: 610 VLKN 613
           ++  
Sbjct: 363 LIGQ 366


>gi|254756954|ref|ZP_05208982.1| DEAD/DEAH box helicase [Bacillus anthracis str. Australia 94]
          Length = 516

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 161/433 (37%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTHKESV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G+ ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMPKFLIAQPEL-HDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +    +A  +   + +LE          A
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|224373572|ref|YP_002607944.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH]
 gi|223588451|gb|ACM92187.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH]
          Length = 467

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 134/348 (38%), Gaps = 38/348 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           L  I F  P+  QE AI  +LQ          + Q   G+GKT    + +   +E G +A
Sbjct: 16  LEEIGFEKPSPIQEKAIPVVLQGKD------IVAQAQTGTGKTAAFGLPILNMLEKGQKA 69

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I ++ ++  I    + G    + +   ++        +I+ T  
Sbjct: 70  LIITPTRELAIQVSEEIFRFGKHLGIHTATVYGGSSYSRQINHIKNSE-----VIVATPG 124

Query: 385 LFQDSIQYYK-------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIPR- 433
              D +   K       ++L   DE    G     +       +    LL +AT P P  
Sbjct: 125 RLIDLLSSGKIDIAPEYVVLDEADEMLDMGFLDDIKEIFKYVPSNRQTLLFSATMPKPIL 184

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIK---TVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           +L  T L D +  +IT+K    + IK    VI    R D +I  +     +  KA   C 
Sbjct: 185 SLAKTILKDPEFIQITKKEVTNENIKEYFYVIDEHERNDALIRLIDY--KQPNKAIVFCR 242

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +  V+               +HG M    +E V+  FK    ++L+AT V
Sbjct: 243 T---------KKDVDTVADFLSGVGFDAKGLHGDMDQRKREEVIKGFKGNRIEILVATDV 293

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+DV D + +   +      + +H++ GR GR  +    I L  P
Sbjct: 294 AARGLDVNDVTHVFNYHLPLDPESYVHRI-GRTGRAGKEGMAISLVTP 340


>gi|78189083|ref|YP_379421.1| DEAD/DEAH box helicase-like [Chlorobium chlorochromatii CaD3]
 gi|78171282|gb|ABB28378.1| ATP-dependent RNA helicase CsdA [Chlorobium chlorochromatii CaD3]
          Length = 640

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/363 (21%), Positives = 136/363 (37%), Gaps = 45/363 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q   I  +L           + Q   G+GKT    + + A+++   A  QA+++A
Sbjct: 32  SPTPIQAQTIPFLLAGRDV------LGQAQTGTGKTAAFALPILASIDIQQAEPQALVLA 85

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  ++Y +      V  I G      + + L R       +++GT     
Sbjct: 86  PTRELAIQVAEAFQRYAEYLKGFHVVPIYGGQDYGIQFRMLRR----GVQVVVGTPGRVM 141

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL-T 438
           D I+           L+L   DE  R G    ++            +  TP  R + L +
Sbjct: 142 DHIRRGSLNLTHLKTLVLDEADEMLRMGFIDDVEWI----------LEQTPAGRQVALFS 191

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I +I +K   +    T+      +D + +R  VV   G     I  +I E +  
Sbjct: 192 ATMPPPIRRIAQKYLDQPAEVTIQTKTTTVDTIRQRYWVV--GGSHKLDILTRILEVEPF 249

Query: 499 N--------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +            +E    L     ++ A+ +G M    +E  ++  KNG   +++AT V
Sbjct: 250 DGMIIFSRTKTMTIELAEKLQARGYAAAAL-NGDMPQNQRERTIEQLKNGNINIVVATDV 308

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV   S ++  +      + +H++ GR GR       IL   P      Y     
Sbjct: 309 AARGLDVERISHVVNYDIPSDTESYVHRI-GRTGRAGRAGDAILFVAPREKNMLYAIEKA 367

Query: 611 LKN 613
            ++
Sbjct: 368 TRS 370


>gi|213613339|ref|ZP_03371165.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 247

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/237 (37%), Positives = 134/237 (56%), Gaps = 6/237 (2%)

Query: 184 VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRK---AKDFE-WTSPARERLAYDELLAGQIA 239
            + E +  +L Q     S+ EA   +H P       D E    PA+ RL  +ELLA  ++
Sbjct: 8   AIAELLPPELAQ--GMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLS 65

Query: 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQ 299
           +L +R   ++    P++    +  K+L ++PF PT +Q   + +I +DM+    M+R++Q
Sbjct: 66  MLALRAGAQRYHTQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQ 125

Query: 300 GDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GDVGSGKTLVA +A   A+  G Q  +MAP  +LA+QH    + + +   + V  + G  
Sbjct: 126 GDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQ 185

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
               R+   E IA GQ  +I+GTHA+FQ+ +Q+  L LVI+DEQHRFGV QRL L +
Sbjct: 186 KGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWE 242


>gi|229171082|ref|ZP_04298680.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
 gi|228612412|gb|EEK69636.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
          Length = 530

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 87/427 (20%), Positives = 159/427 (37%), Gaps = 30/427 (7%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTNKEAV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D I    L L  V+        + L +        +L        +TL+ ++   
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTD-VPDTHQTLLFSATMP 186

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESN 499
             I +I E+    +P    +         I++  + + E KK   +   ++ +       
Sbjct: 187 DPIRRIAERFMT-EPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIV 245

Query: 500 FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F     R + L E       +   IHG ++   + SV+  FK G  ++L+AT V   G+D
Sbjct: 246 FGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + +   +      + +H++ GR GR  +    +L   P  S          K   D
Sbjct: 306 ISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKVD 364

Query: 617 GFLIAEEDLKQRKEGEILGIK-QSGMP-KFLIAQPELHDSLLEI-----ARKDAKHILTQ 669
                  D     +  ++  K QS +    L     + + +LE          A  ++T+
Sbjct: 365 RMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEENDSVTVVAAALKMMTK 424

Query: 670 DPDLTSV 676
           +PD T +
Sbjct: 425 EPDTTPI 431


>gi|225849264|ref|YP_002729428.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644065|gb|ACN99115.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 397

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 76/360 (21%), Positives = 146/360 (40%), Gaps = 33/360 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ +S PT+ QE AI  +L           + Q   G+GKT    I +  +V      
Sbjct: 19  LEDLGYSKPTEIQEKAIPAVLSGKD------LVAQAQTGTGKTAAFGIPIVESVNTKQKK 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  + IK   +N ++ V  + G     H+   L+    G   +I+G
Sbjct: 73  IQALVLVPTRELAIQVAKEIKDLGKNKKVFVLSVYGGKSMKHQIDFLK---KGNDVVIVG 129

Query: 382 THALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTL 435
           T    +D ++   L L  V     DE  R      ++  +        +M+  P   + L
Sbjct: 130 TPGRVKDLLERGFLKLDNVKMFVLDEADRMLEMGFIEDIED-------IMSYLPEDRQNL 182

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I ++ ++          + P     E I+++   +    K   +   + + 
Sbjct: 183 LFSATMPKEILELAQEFLNEDYQTIKVKPDEITVEKIKQIIYRVDPKNKFNKLIEVLSQN 242

Query: 496 KESNFRSVVER---FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        +     + L E  +    S++ IHG  S   +E+V+ +F+ G  K+L+AT 
Sbjct: 243 QAEKTIIFTQTKLEADQLSEDLSKEGFSVSAIHGDFSQKKRETVLHNFRTGKLKILVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+    ++I         + +H++ GR GR  +  + I +  P   K     L 
Sbjct: 303 VAARGLDIKGVELVINYGLPKNAESYVHRI-GRTGRAGKEGTAISIPTPSEDKYLQQILQ 361


>gi|73965241|ref|XP_861914.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 15 [Canis
           familiaris]
          Length = 620

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 85/446 (19%), Positives = 158/446 (35%), Gaps = 69/446 (15%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVETY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
                 I I T     D ++  K  L     +++DE  R          +K      +  
Sbjct: 217 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRVST 273

Query: 427 TATPIPRTLVLTSLGDIDISKITEKP-----------------AGRKPIKTVIIPINRID 469
              P  +TL+ ++    ++ ++ E                        I  V   + + +
Sbjct: 274 PKNPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDE 333

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           ++I  ++ ++SE +    +  + +       R   E    +      ++ I HG  S  +
Sbjct: 334 KLIRLMEEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQE 385

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           ++ V++ FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  + 
Sbjct: 386 RDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKT 444

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTE 615
            +    + P   K     +SVL+   
Sbjct: 445 GTAYTFFTPNNIKQVSDLISVLREAN 470


>gi|239995610|ref|ZP_04716134.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
          Length = 483

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 140/371 (37%), Gaps = 41/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  QE AI ++LQ          +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQEKAIPEVLQGKDV------LAAAQTGTGKTAGFGLPILQRLMEGQPVSGNNVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I+ +++   +   ++ G +    +   L +       ++I T  
Sbjct: 77  LILTPTRELAAQVEESIRAFSEFLPLKTAVVFGGVGINPQMMKLRK----GVDVLIATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      +            ++   P  R  +L S
Sbjct: 133 RLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDI-------RRVLKLLPQERQSLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D      K   R P+     P N   E +++  V + + KK   +   I+++K   
Sbjct: 186 ATFSDEITALAKTITRNPVSISTAPANTTVEAVQQHLVTIDKSKKTTALICLIKQQKWEQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R            A IHG  S   +   +  FKNG  K+L+AT +   
Sbjct: 246 VLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGAIKVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL-- 611
           GID+ +  I++  +  +     +H++ GR GR                +N     +++  
Sbjct: 306 GIDISELPIVVNLDLPNTAADYVHRI-GRTGRAGASGQAWSFVCAEELQNLKDIETLIQK 364

Query: 612 ---KNTEDGFL 619
              + T +GF 
Sbjct: 365 LLPRETLEGFE 375


>gi|10177293|dbj|BAB10554.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
          Length = 564

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/369 (21%), Positives = 133/369 (36%), Gaps = 38/369 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------ 318
           +  + F  PT  Q       L+          I   + GSGKTL  L+     V      
Sbjct: 153 IAKLGFTEPTPIQAQGWPMALKGRD------LIGIAETGSGKTLAYLLPALVHVSAQPRL 206

Query: 319 --EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
             + G   +I+AP   LA Q  E  +K+   + +    I G  P+  + + L R      
Sbjct: 207 GQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRR----GV 262

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLM 426
            I+I T     D ++           L+L   D     G + +++    Q       LL 
Sbjct: 263 EIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLW 322

Query: 427 TATPIPR--TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +AT      TL    L D   + I             +I I    E   RL  +L +   
Sbjct: 323 SATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMD 382

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              I   +E K     R   +    L      ++AI HG  +  +++ V+  FK+G   +
Sbjct: 383 GSKILIFVETK-----RGCDQVTRQLRMDGWPALAI-HGDKTQSERDRVLAEFKSGRSPI 436

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           + AT V   G+DV D   ++  +  +     +H++ GR GR          +    +K +
Sbjct: 437 MTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRI-GRTGRAGAKGMAFTFFTHDNAKFA 495

Query: 605 YTRLSVLKN 613
              + +L+ 
Sbjct: 496 RELVKILQE 504


>gi|221307593|ref|NP_001138306.1| probable ATP-dependent RNA helicase DDX5 [Pan troglodytes]
 gi|156630859|sp|A5A6J2|DDX5_PANTR RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|146741418|dbj|BAF62365.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Pan troglodytes verus]
          Length = 614

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 157/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVETY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                   I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 217 ---GVENCIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 334 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 385

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 444

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 445 FTPNNIKQVSDLISVLREAN 464


>gi|315499759|ref|YP_004088562.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB
           48]
 gi|315417771|gb|ADU14411.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
           48]
          Length = 501

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/366 (20%), Positives = 146/366 (39%), Gaps = 42/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI   L  +        +     G+GKT    + M   + +G       +A+
Sbjct: 24  TPTAIQEQAIPIALIGLDV------LGIAQTGTGKTAAFTLPMIEKLASGRSRARMPRAI 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E  +KY +  ++   ++ G +  A +   L++       ++I T   
Sbjct: 78  VLAPTRELADQVAEAFEKYAKYCKLNWALLIGGVSMADQVAKLDK----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D  +  K++L     ++VDE  R      +   +       +     P  +TL  ++ 
Sbjct: 134 LLDLFERSKVMLNGVQLMVVDEADRMLDMGFIPDIE------RIFKLTPPSRQTLFFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK-------KAYWICPQIE 493
              +I+++TE+   + P++  +      +E I +    +  G        K   +   I 
Sbjct: 188 MPPEITRLTEQFL-KNPVRIEVSRPATTNENITQYVYRVPSGDSKLLAKAKRLALRTLIG 246

Query: 494 EKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           + +        N ++ V+           + A IHG +    +   +D+F++G  KLL+A
Sbjct: 247 QLEINNGIVFCNRKTDVDIVAKSLSVHGFNAAPIHGDLDQSLRMKTLDAFRSGELKLLVA 306

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           + V   G+D+   S +   +  H     +H++ GR GR        L+  P   KN    
Sbjct: 307 SDVAARGLDIPSVSHVFNFDVPHHADDYVHRI-GRTGRAGRTGEAYLILAPNDEKNYDKV 365

Query: 608 LSVLKN 613
           L ++K 
Sbjct: 366 LKLIKK 371


>gi|190573462|ref|YP_001971307.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a]
 gi|190011384|emb|CAQ44999.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a]
          Length = 654

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 93/451 (20%), Positives = 163/451 (36%), Gaps = 51/451 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +P+  Q + I  +L+          + Q   G+GKT    + + + ++      QA+I+A
Sbjct: 31  TPSPIQAATIPAMLEGRDV------LGQAQTGTGKTAAFALPVLSNIDLQQIKPQALILA 84

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  + Y+ +     V  + G  P   +  AL R      HI++GT     
Sbjct: 85  PTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALRR----GVHIVVGTPGRVI 140

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRT--L 435
           D +            L+L   DE  R G    ++  L +      V L +AT  P+   +
Sbjct: 141 DHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATMPPQIRRI 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E   A  I  +    
Sbjct: 201 AQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEVEPFDAMIIFART--- 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E   S  +    + A I+G M    +E  +   K G   +L+AT V   G+
Sbjct: 258 -----KAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAARGL 312

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P             +   
Sbjct: 313 DVERISHVLNYDIPYDTESYVHRI-GRTGRAGRSGEAILFATPREKGMLRQIERATRQPI 371

Query: 616 DGFLI----AEEDLKQRKE----GEILGIKQSGMPKFLIAQPELHDS-----LLEIARKD 662
           +   +    A  D +  K      E LG   +G   F     E  ++      +EIA   
Sbjct: 372 EEMQLPSVEAVNDNRINKFTTRITETLG---AGGLDFYRQLLERFENEQNVPAIEIAAAL 428

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           AK +    P L     ++ R      +  + 
Sbjct: 429 AKMLQGDTPFLLQPPVRAPREERAPRERFDR 459


>gi|228956670|ref|ZP_04118461.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228803008|gb|EEM49835.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 517

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 161/433 (37%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTHKESV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G+ ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMPKFLIAQPEL-HDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +    +A  +   + +LE          A
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|229041132|ref|ZP_04189892.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
 gi|228727214|gb|EEL78411.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
          Length = 525

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 161/433 (37%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTHKESV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G+ ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMPKFLIAQPEL-HDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +    +A  +   + +LE          A
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|229107908|ref|ZP_04237540.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
 gi|229125742|ref|ZP_04254771.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-Cer4]
 gi|229143032|ref|ZP_04271470.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST24]
 gi|296501059|ref|YP_003662759.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|146291075|sp|Q81IT9|CSHA_BACCR RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|228640440|gb|EEK96832.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST24]
 gi|228657715|gb|EEL13524.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-Cer4]
 gi|228675551|gb|EEL30763.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
 gi|296322111|gb|ADH05039.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 533

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 161/433 (37%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTHKESV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G+ ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMPKFLIAQPEL-HDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +    +A  +   + +LE          A
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|296201832|ref|XP_002748195.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 2
           [Callithrix jacchus]
          Length = 603

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/368 (22%), Positives = 141/368 (38%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L  +     M+ + Q   GSGKTL  L+     +          G  
Sbjct: 105 EPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHINHQPFLERGDGPI 158

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER       I I T 
Sbjct: 159 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 214

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 215 GRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 274

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I   E  A      I  V   + + +++I  ++ ++SE +    
Sbjct: 275 VRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTI 334

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +  + +       R   E    +      ++ I HG  S  +++ V++ FK+G   +LIA
Sbjct: 335 VFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLNEFKHGKAPILIA 386

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +  +     +H++ GR  R  +  +    + P   K     
Sbjct: 387 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDL 445

Query: 608 LSVLKNTE 615
           +SVL+   
Sbjct: 446 ISVLREAN 453


>gi|220923247|ref|YP_002498549.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219947854|gb|ACL58246.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 465

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 69/340 (20%), Positives = 129/340 (37%), Gaps = 28/340 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI  +L       R   +     G+GKT    + M   +E G       + +
Sbjct: 23  TPTPIQAQAIPHVLA------RRDVLGVAQTGTGKTAAFTLPMLTRLEQGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  ++Y  N ++ V ++ G +  A +   + R       ++I T   
Sbjct: 77  ILEPTRELAAQVEENFERYGTNHKLNVALLIGGVSFADQDAKITR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D  +  KL+L  V E        R+           ++       +TL  ++    +I
Sbjct: 133 LLDHFERGKLLLTGV-ELLVIDEADRMLDMGFIPDIERIVKLVPFTRQTLFFSATMPPEI 191

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKE------- 497
            ++ +      P++  +         IE+  V    EG +      ++    E       
Sbjct: 192 QRLADDFL-HNPVRIEVARPASTASTIEQRLVATGGEGHQKRKTLRRLIRGAEELKNGII 250

Query: 498 -SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V +      +   ++A +HG M    + + +D+F++G   LL+A+ V   G+D
Sbjct: 251 FCNRKRDVAQLQKSLANHGFTVAALHGDMDQRARMAALDAFRSGEIPLLVASDVAARGLD 310

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +   S +   +  H     +H++ GR GR     S   L 
Sbjct: 311 IPAVSHVFNFDVPHHAEDYVHRI-GRTGRAGRNGSAFTLV 349


>gi|323499260|ref|ZP_08104237.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
 gi|323315648|gb|EGA68682.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
          Length = 646

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 92/444 (20%), Positives = 176/444 (39%), Gaps = 48/444 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + F SPT  Q ++I  +++       +  + +   G+GKT    + +   ++ G   
Sbjct: 21  LEGMGFVSPTPIQAASIPHLMEG------VDALGKAQTGTGKTAAFSLPLLNKLDLGQRK 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++AP   LA Q    IK   QN + + V  I G      + +AL+      AHI++
Sbjct: 75  PQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIVDQMRALKH----GAHIVV 130

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLT 438
           GT    QD I   +L    +DE H F + +  ++        V  ++  A    + ++ +
Sbjct: 131 GTPGRVQDLINRDRL---HLDEVHTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     +  I E+   R+P+   +   N   + +E+   V+   +K   +   +E ++  
Sbjct: 188 ATMPPMLKNIVERFL-REPVTIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETD 246

Query: 499 ------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R   ER            + +HG +    +E  +D  K G   +L+AT V+ 
Sbjct: 247 ASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   + +   +      + +H++ GR GR       ILL      +   T   V K
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQLRMLRTIERVTK 365

Query: 613 NTEDGFLIAEED------LKQRKEGEILGIKQ-------SGMPKFLIAQPELHDSLLEI- 658
           ++ +   +   D      L +    E+   K+       S + + L    EL  + L   
Sbjct: 366 SSMEEIQLPHRDKVAEARLAKLGA-ELETEKEHKALEKFSELVEKLQESLELDAATLAAI 424

Query: 659 --ARKDAKH---ILTQDPDLTSVR 677
              R+  K     + +DP + ++ 
Sbjct: 425 LLKRQQGKRPLFYIGEDPMIEAIE 448


>gi|229028084|ref|ZP_04184235.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
 gi|228733237|gb|EEL84068.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
          Length = 527

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 160/433 (36%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTNKEAV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G  ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMP-KFLIAQPELHDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +  + L     + + +LE          A
Sbjct: 359 TKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|157412008|gb|ABV54630.1| RecG [Enterococcus faecium]
          Length = 193

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/194 (40%), Positives = 132/194 (68%), Gaps = 3/194 (1%)

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
            G++D+S I E PAGR PI+T  +   ++D V++  +  L+ G + Y ICP IEE +  +
Sbjct: 1   YGEMDVSIIDELPAGRIPIETRWVRTPQLDSVLDWTRKELARGHQMYVICPLIEESEALD 60

Query: 500 FRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            ++ VE +  L E F     + ++HG+M + +KE +M++FK+   ++L++TTVIEVG++V
Sbjct: 61  VKNAVEVYEKLRELFAPKYEVGLLHGKMKNQEKEVIMEAFKDNQMQILVSTTVIEVGVNV 120

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            +A++++I +A+ FGLAQLHQLRGRVGRG + S CIL+ +P  ++    R+ ++  T +G
Sbjct: 121 PNATVMLIMDADRFGLAQLHQLRGRVGRGSDASYCILVANPK-NELGVERMKIMTETTNG 179

Query: 618 FLIAEEDLKQRKEG 631
           F+++E+DL+ R  G
Sbjct: 180 FVLSEKDLELRGPG 193


>gi|309792203|ref|ZP_07686675.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
 gi|308225744|gb|EFO79500.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
          Length = 523

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/355 (22%), Positives = 140/355 (39%), Gaps = 34/355 (9%)

Query: 259 GKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   ++L ++ +  PT  QE AI  +L +         I Q   G+GKT    + +   
Sbjct: 10  SEPILRVLGDLGYDEPTPIQEQAIPVMLSN------SDVIAQAQTGTGKTAAFALPIVQR 63

Query: 318 VEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           +      QA+I+AP   LA Q  E I KY +  +I V  + G  P   + +ALE+     
Sbjct: 64  LRDERVPQALILAPTRELAMQVAEAIYKYGKGRRISVAPVYGGQPIYRQLRALEQ----G 119

Query: 376 AHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLL 425
             +++GT     D ++   L+L  +        DE    G  + ++    Q        L
Sbjct: 120 VQVVVGTPGRIMDHMRRGTLVLDQISTVVLDEADEMLDMGFAEDIEFILQQTPQQRQTAL 179

Query: 426 MTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     + LV     D     I  +       +     +   +++    +++  E  
Sbjct: 180 FSATMPEAVQGLVQRYTRDAKRISIAAEQLATPRTRQTYYEVMPREKLDALCRILDVETP 239

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            +  I  +         RS  +      +       ++HG MS   ++ VM  F+ G  +
Sbjct: 240 SSAIIFCRT--------RSEADALGESLQGRGYLSEVLHGDMSQAQRDRVMKRFREGQAE 291

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           LL+AT V   G+D+ D + +I  +  +   A +H++ GR GR       I L  P
Sbjct: 292 LLVATDVAARGLDIPDVTHVINYDVPNDPEAYVHRI-GRTGRAGRTGLAITLITP 345


>gi|218674642|ref|ZP_03524311.1| DEAD/DEAH box helicase domain protein [Rhizobium etli GR56]
          Length = 420

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/363 (21%), Positives = 141/363 (38%), Gaps = 42/363 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI   L+      R         G+GKT   ++ M + +E G       + +I
Sbjct: 25  PTPIQAGAIPFALE------RRDICGIAQTGTGKTASFVLPMLSLLEKGRARARMPRTLI 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  +KY +N ++ V ++ G +    + + LER     A ++I T    
Sbjct: 79  LEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER----GADVLICTPGRL 134

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIPRT 434
            D  +  KL++  V     DE  R      +   ++           L  +AT  P  + 
Sbjct: 135 LDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSATMPPEIQK 194

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSEGKKAYWICP 490
           L    L + +  ++ +  +  K +    +  +  D     V+  L     E K A   C 
Sbjct: 195 LADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQGELKNAIIFCN 254

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         + V + F SL  H   S+  +HG M    +  ++ SF++G  +LL+A+ V
Sbjct: 255 R--------KKDVADLFRSLERHG-FSVGALHGDMDQRSRTMMLQSFRDGNLQLLVASDV 305

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D S +   +        +H++ GR GR     +   L     +K       +
Sbjct: 306 AARGLDIPDVSHVFNFDVPIHSEDYVHRI-GRTGRAGRSGAAFTLVTKRDTKFVDAIEKL 364

Query: 611 LKN 613
           +  
Sbjct: 365 IGE 367


>gi|154248677|ref|YP_001419635.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154162762|gb|ABS69978.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 537

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 137/364 (37%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  +L       R   +     G+GKT    + M   +E G       + +
Sbjct: 23  QPTPIQAQAIPHVLA------RRDVLGLAQTGTGKTAAFTLPMLTLLEHGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   +Y +N ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVEENFTRYGKNHKLNVALLIGGVSFGDQDSKLLR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--R 433
             D ++  +L+L      ++DE  R      +   ++           L  +AT  P  +
Sbjct: 133 LLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFSATMPPEIQ 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK----KAYWIC 489
            LV   L +    ++++  +    +  +++   R D     +   L             C
Sbjct: 193 RLVSQFLSNPVRVEVSKPASTAATVTHMLVASGREDYDKREVLRELIRNCDGLQNGIIFC 252

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         R V     SL +H  +++A+ HG M    +   +D F++G   LL+A+ 
Sbjct: 253 NR--------KRDVAVLHRSLQKHGFNAVAL-HGDMDQHARIKALDQFRSGEATLLVASD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+   S +   +  H     +H++ GR GR     +   L     +K+      
Sbjct: 304 VAARGLDIPAVSHVFNYDVPHHSEDYVHRV-GRTGRAGRAGTAYTLVTHTDAKSVTAIEK 362

Query: 610 VLKN 613
           ++ N
Sbjct: 363 LIGN 366


>gi|62857657|ref|NP_001016781.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Xenopus (Silurana)
           tropicalis]
          Length = 609

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 156/447 (34%), Gaps = 57/447 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE-IGIPINVEGK 260
             + +++   P+  K+F    P   R     +    +  L  +K+     +  P  + G 
Sbjct: 30  RKKRWDLSELPKFEKNFYTEHPEVAR-----MTQHDVEELRRKKEITIRGVNCPKPIYGF 84

Query: 261 IAQKILRNI--------PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
                 + +           PT  Q       L        M+ I Q   GSGKTL  L+
Sbjct: 85  HQANFPQYVLDVLIDQRFKEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYLL 138

Query: 313 AMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
                +          G   +++AP   LAQQ  +    Y +++++    I G  P+  +
Sbjct: 139 PAMVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKSSRLKSTCIYGGAPKGPQ 198

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT- 415
            + LER       I I T     D ++  K        L+L   D     G + +++   
Sbjct: 199 IRDLER----GVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIV 254

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRKPIKTVII--PINRI 468
            Q       L+ +AT       L      D  +I     E  A    ++ V +     + 
Sbjct: 255 DQIRPDRQTLMWSATWPKEVRQLAEDFLRDYVQINIGNLELSANHNILQIVDVCQESEKD 314

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
            ++I+ ++ +++E +    I            +   +               IHG  S  
Sbjct: 315 HKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQQ 366

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +++ V+  F+ G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R   
Sbjct: 367 ERDWVLCEFRTGKAPILIATDVASRGLDVEDIKFVINYDYPNSSEDYVHRI-GRTARSTN 425

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTE 615
             +    + P   K +   + VL+   
Sbjct: 426 KGTAYTFFTPGNLKQARELVKVLEEAN 452


>gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 544

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 134/358 (37%), Gaps = 34/358 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N++ KI   +       P+  Q+ AI   L+          I Q   G+GKT    I +
Sbjct: 24  LNLDRKILAALKEMGFEEPSPIQKGAIPMALEGED------LIGQAQTGTGKTAAFGIPI 77

Query: 315 AAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
              +   +   QA++M+P   L  Q  + I K  +  +I V  + G  P   + ++L+R 
Sbjct: 78  IQKINEKDRHIQALVMSPTRELCIQVADEISKIGKTKRIRVLPVYGGQPIERQIRSLKR- 136

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHV 423
                 ++IGT     D I+           L+L   DE    G    ++          
Sbjct: 137 ---GIQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENI-------- 185

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +    P  +T++ ++     I  I++K      +  +   +     + +       +  
Sbjct: 186 -IKNVPPERQTMLFSATMPRPILSISKKYMRAPKVVAIHKEVVTAPTIDQYYYETRDKVD 244

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
               I    ++ K   F    +  + L     +       +HG +S   ++ VM  F++G
Sbjct: 245 GLCRILDTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSG 304

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              +L+AT V   G+D+ + + ++  +      + +H++ GR GR       +    P
Sbjct: 305 QVDILVATDVAARGLDIDNITHVVNFDVPSDSESYVHRI-GRTGRAGNTGVALTFITP 361


>gi|195163860|ref|XP_002022767.1| GL14575 [Drosophila persimilis]
 gi|194104790|gb|EDW26833.1| GL14575 [Drosophila persimilis]
          Length = 1243

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 151/377 (40%), Gaps = 42/377 (11%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K    +LR + F  PT  Q  AI  I+           I     GSGKTL  ++ M   
Sbjct: 545 SKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRD------LIGIAKTGSGKTLAFILPMFRH 598

Query: 318 VEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +          G  A+IMAP   L  Q  + I++++++  +    + G    + +   L+
Sbjct: 599 ILDQPNLDEGDGAIAIIMAPTRELCMQIGKDIRRFSKSLGLRPVCVYGGTGISEQIAELK 658

Query: 370 RIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           R +     II+ T     D +           ++  V++DE  R                
Sbjct: 659 RGSE----IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVM----- 709

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             ++    P  +T++ ++     +  +  +   +KPI+ ++   + + + +E+  V+L++
Sbjct: 710 -RIIDNVRPDRQTVMFSATFPRQMEALARR-ILKKPIEVIVGGRSVVCKDVEQHVVILND 767

Query: 482 GKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534
             K + +   +   +E      F    E  + L      +      +HG +   D++S +
Sbjct: 768 ESKFFKLLELLGIYQEAGSIIVFADKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTI 827

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR  +  S   
Sbjct: 828 IDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHR-CGRTGRAGKKGSAYT 886

Query: 595 LYHPPLSKNSYTRLSVL 611
              P  S+ +   +  L
Sbjct: 887 FITPEQSRYAGDIIRAL 903


>gi|308807146|ref|XP_003080884.1| DEAD box protein P68 (ISS) [Ostreococcus tauri]
 gi|116059345|emb|CAL55052.1| DEAD box protein P68 (ISS) [Ostreococcus tauri]
          Length = 571

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 136/392 (34%), Gaps = 41/392 (10%)

Query: 258 EGKIAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           + ++ + IL +I F     P+  Q  AI  IL           +   + GSGKT    I 
Sbjct: 115 DMELKRDILADIKFREYDKPSPIQAQAIPVILSGRDV------LGCAETGSGKTAAFSIP 168

Query: 314 MAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHR 364
           M              G  A++MAP   LAQQ     K +T+++      II G    + +
Sbjct: 169 MIQHALNQAPLRQGDGPFAIVMAPTRELAQQIETEAKTFTRSSKGFRTAIIVGGTNMSEQ 228

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKL 414
           R  L     G   I++ T     D +Q           ++L   D     G   Q R  L
Sbjct: 229 RSMLR----GGVQIVVATPGRLIDHLQQGNTNLARVSFVVLDEADRMLDMGFEPQIREVL 284

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI-----TEKPAGRKPIKTVIIPINRID 469
                    LL +AT       L +       K+     +   A        ++   ++D
Sbjct: 285 MNLPKPHQTLLFSATMPVEVEALAADYLNKPVKVKVGQTSAPTANVSQQLEKVVDAEKVD 344

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            ++  L     E +K     P      E   R+  +    L      S A +HG  S  +
Sbjct: 345 RLVTMLISEQREAQKLGHSMPMTVVFVERKHRA--DEIAELLNAENVSAAALHGGRSQGE 402

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E+ +  +K G C +L+AT V   G+DV   + ++  +        +H++ GR GR    
Sbjct: 403 REAALHDYKTGRCSVLVATDVAARGLDVKGVAHVVNLDLPRNFEDYVHRI-GRTGRAGMS 461

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
                 Y    S         L   E G   A
Sbjct: 462 GRSTSFYTDRDSFIVAQIKRALMELEAGNAFA 493


>gi|30260423|ref|NP_842800.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47525504|ref|YP_016853.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47567484|ref|ZP_00238196.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49183266|ref|YP_026518.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|49479130|ref|YP_034574.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|65317675|ref|ZP_00390634.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|118475995|ref|YP_893146.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|165871548|ref|ZP_02216194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167634144|ref|ZP_02392466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167640350|ref|ZP_02398615.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170687759|ref|ZP_02878974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|170707898|ref|ZP_02898348.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177653423|ref|ZP_02935633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190567376|ref|ZP_03020290.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|196035956|ref|ZP_03103357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196041156|ref|ZP_03108452.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|196046212|ref|ZP_03113439.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|218901440|ref|YP_002449274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225862289|ref|YP_002747667.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227812915|ref|YP_002812924.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228912978|ref|ZP_04076622.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228925493|ref|ZP_04088587.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931740|ref|ZP_04094641.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228983493|ref|ZP_04143703.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229089370|ref|ZP_04220646.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
 gi|229119903|ref|ZP_04249162.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
 gi|229154007|ref|ZP_04282136.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           4342]
 gi|229182634|ref|ZP_04309880.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
 gi|229604746|ref|YP_002864874.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254686589|ref|ZP_05150448.1| DEAD/DEAH box helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254723571|ref|ZP_05185358.1| DEAD/DEAH box helicase [Bacillus anthracis str. A1055]
 gi|254734933|ref|ZP_05192645.1| DEAD/DEAH box helicase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254739718|ref|ZP_05197411.1| DEAD/DEAH box helicase [Bacillus anthracis str. Kruger B]
 gi|254754911|ref|ZP_05206946.1| DEAD/DEAH box helicase [Bacillus anthracis str. Vollum]
 gi|301051970|ref|YP_003790181.1| DEAD/DEAH box helicase [Bacillus anthracis CI]
 gi|81696998|sp|Q6HPE6|CSHA_BACHK RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|81715465|sp|Q81VG0|CSHA_BACAN RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|134039177|sp|A0R8U6|CSHA_BACAH RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|30253744|gb|AAP24286.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47500652|gb|AAT29328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|47555886|gb|EAL14225.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49177193|gb|AAT52569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|49330686|gb|AAT61332.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|118415220|gb|ABK83639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|164712652|gb|EDR18183.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167511752|gb|EDR87133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167530458|gb|EDR93173.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170127256|gb|EDS96133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|170668286|gb|EDT19034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|172081463|gb|EDT66536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190561503|gb|EDV15474.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|195991325|gb|EDX55292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196022957|gb|EDX61637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|196028091|gb|EDX66702.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|218539043|gb|ACK91441.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225790192|gb|ACO30409.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227005398|gb|ACP15141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228600842|gb|EEK58416.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
 gi|228629528|gb|EEK86226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           4342]
 gi|228663560|gb|EEL19141.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
 gi|228693970|gb|EEL47657.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
 gi|228776237|gb|EEM24593.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228827920|gb|EEM73653.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228834238|gb|EEM79781.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228846673|gb|EEM91681.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229269154|gb|ACQ50791.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|300374139|gb|ADK03043.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI]
          Length = 528

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 161/433 (37%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTHKESV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G+ ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMPKFLIAQPEL-HDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +    +A  +   + +LE          A
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|194903791|ref|XP_001980939.1| GG17436 [Drosophila erecta]
 gi|190652642|gb|EDV49897.1| GG17436 [Drosophila erecta]
          Length = 793

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/390 (17%), Positives = 135/390 (34%), Gaps = 50/390 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  I+           +     GSGKT   L+ +   +             
Sbjct: 312 KPTPVQKHAIPIIINGRD------LMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTR 365

Query: 319 -----EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                +     +++AP   LA Q +E  KK+   +++   ++ G    + + + L+R   
Sbjct: 366 QYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDR--- 422

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+I+ T    +D I   K+ L  +     DE  R          Q       L M  
Sbjct: 423 -GCHLIVATPGRLEDMITRGKVGLDNIRFLVLDEADRMLDMGFEP--QIRRIVEQLNMPP 479

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++     I ++         I   +  +    E I +  + + E  K  ++
Sbjct: 480 TGQRQTLMFSATFPKQIQELASDFLS-NYIFLAVGRVGSTSENITQTILWVYEPDKRSYL 538

Query: 489 CPQIEEKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              +   ++                +   +            +  IHG  +  ++E  + 
Sbjct: 539 LDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALR 598

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G C +L+AT V   G+D+     +I  +        +H++ GR GR   +      
Sbjct: 599 CFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRI-GRTGRMGNLGVATSF 657

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           ++          L +L  T+       ED+
Sbjct: 658 FNEKNRNICSDLLELLIETKQEIPSFMEDM 687


>gi|229165218|ref|ZP_04293010.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
 gi|228618250|gb|EEK75283.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
          Length = 519

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 88/431 (20%), Positives = 159/431 (36%), Gaps = 42/431 (9%)

Query: 269 IPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QA 324
           + F   T  Q   I   LQ          I Q   G+GKT    + +   V+      Q 
Sbjct: 1   MGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTNKEAVQG 54

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT  
Sbjct: 55  IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGTPG 110

Query: 385 LFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PIP- 432
              D I    L        +L   DE    G  + +   LT        LL +AT P P 
Sbjct: 111 RILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPI 170

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R +    + +    K+  K      I+   + +    +     +++  +  +   I  + 
Sbjct: 171 RRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIIFGRT 230

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  V+  +        +   IHG ++   + SV+  FK GT ++L+AT V  
Sbjct: 231 --------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLVATDVAA 282

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+   + +   +      + +H++ GR GR  +    +L   P  S          K
Sbjct: 283 RGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 341

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIK-QSGMP-KFLIAQPELHDSLLEI-----ARKDAKH 665
              D       D     +  ++  K QS +    L     + + +LE          A  
Sbjct: 342 RKVDRMDAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEENDSVTVVAAALK 401

Query: 666 ILTQDPDLTSV 676
           ++T++PD T +
Sbjct: 402 MMTKEPDTTPI 412


>gi|195069886|ref|XP_001997052.1| GH22580 [Drosophila grimshawi]
 gi|193891570|gb|EDV90436.1| GH22580 [Drosophila grimshawi]
          Length = 793

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 83/366 (22%), Positives = 136/366 (37%), Gaps = 39/366 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q   +   L           +     GSGKTL  ++     +          G  
Sbjct: 168 KPTAIQAQGMPIALSGRD------LVAVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPI 221

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ      ++  NTQ+    I G  P+  + + LER       I+I T 
Sbjct: 222 ALVLAPTRELAQQIQAVASEFGSNTQVRNTCIFGGAPKGQQARDLER----GVEIVIATP 277

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 278 GRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKE 337

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWIC 489
            R L    L +     I             I+ +    E I +L  +L++  G+      
Sbjct: 338 VRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDESEKIAKLVQLLTQISGENETKTI 397

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +E KK  +     E   ++      + AI HG  S  +++ V+ SF+NG   +L+AT 
Sbjct: 398 IFVETKKRVD-----EITRNISRQGWRACAI-HGDKSQQERDFVLSSFRNGRHSILVATD 451

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV D   +I  +        +H++ GR GR     +   L+    +  +   + 
Sbjct: 452 VAARGLDVDDVKFVINYDYPSNSEDYVHRI-GRTGRSNNTGTAYTLFTHSNANKANDLIQ 510

Query: 610 VLKNTE 615
           VL+   
Sbjct: 511 VLREAN 516


>gi|319787505|ref|YP_004146980.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466017|gb|ADV27749.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 616

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 148/403 (36%), Gaps = 40/403 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q + I  +L           +     G+GKT    + + + ++   A  QA+++A
Sbjct: 34  TPSPIQAATIPALLSGRDV------LGTAQTGTGKTAAFALPILSHLDLKLARPQALVLA 87

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  ++Y  Q     V  I G      +  AL R      H+++GT     
Sbjct: 88  PTRELAIQVAEAFQRYAVQMPGFQVLPIYGGQGYGPQLHALRR----GVHVVVGTPGRVI 143

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT--PIPRTL 435
           D ++           L+L   DE  R G    ++  L +      V L +AT  P  R +
Sbjct: 144 DHLERGTLDLSGLRNLVLDEADEMLRMGFIDDVEAVLKKVPDERQVALFSATMPPPIRRI 203

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L +     I  K      I+     ++ + ++    +++ +E   A  +  +    
Sbjct: 204 AQTYLREPVEVTIASKTTTSANIRQRYWFVSGMHKLDALTRILEAEPFDAMIVFART--- 260

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E   +  +    + A I+G M    +E  +   K+G   +L+AT V   G+
Sbjct: 261 -----KAATEELANKLQARGVAAAAINGDMQQQQRERTIQQLKDGRLDVLVATDVAARGL 315

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P             +   
Sbjct: 316 DVERISHVLNYDIPYDTESYVHRI-GRTGRAGRSGEAILFVTPREKGMLRAIERATRQPI 374

Query: 616 DGFLI----AEEDLK-QRKEGEILGIKQSGMPKFLIAQPELHD 653
           +   +    A  D +  R    I G  ++G         + + 
Sbjct: 375 EEMRLPTVQAVNDRRVARFFERIEGTLEAGGLDEYRELVDRYA 417


>gi|228950768|ref|ZP_04112897.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229067991|ref|ZP_04201304.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
 gi|229077588|ref|ZP_04210230.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
 gi|229176827|ref|ZP_04304229.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
 gi|228606719|gb|EEK64138.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
 gi|228705727|gb|EEL58071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
 gi|228715129|gb|EEL66992.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
 gi|228808908|gb|EEM55398.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 525

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 161/433 (37%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTHKESV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G+ ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMPKFLIAQPEL-HDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +    +A  +   + +LE          A
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|206972279|ref|ZP_03233226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|218235804|ref|YP_002365074.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
 gi|228919172|ref|ZP_04082546.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|229148635|ref|ZP_04276889.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
 gi|206732853|gb|EDZ50028.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|218163761|gb|ACK63753.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
 gi|228634893|gb|EEK91468.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
 gi|228840483|gb|EEM85750.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 533

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 161/433 (37%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTHKESV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G+ ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMPKFLIAQPEL-HDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +    +A  +   + +LE          A
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|329926082|ref|ZP_08280693.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
 gi|328939480|gb|EGG35833.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
          Length = 506

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 140/358 (39%), Gaps = 28/358 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + M   +             
Sbjct: 23  APTPIQAQAIPAVLAGRD------LLGCAQTGTGKTAAFSVPMIQLLNQQPPKPGMGRRI 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A++++P   LA Q  + +K Y+Q T++    I G + Q  + +AL++     A I+I T
Sbjct: 77  RALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERALQQ----GADILIAT 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D +    + L  V E        R+           ++       +TL  ++   
Sbjct: 133 PGRLLDLMNQKHVDLQHV-EILVLDEADRMLDMGFIHDVKRIIAKMPSKKQTLFFSATMP 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------ 496
            +I+++ +      P+K  I P++   E IE+   +L  G K   +   +++        
Sbjct: 192 AEITQLVQT-LLHNPVKVEITPVSSTAERIEQSVYLLETGNKQQQLNELMKDSSIVSALV 250

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +  +   +R          +   IHG  S   +++ +++FK+G  ++L+AT +   GID
Sbjct: 251 FTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGATRVLVATDIAARGID 310

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           + + S +I  N  +     +H++ GR GR     + I                ++  +
Sbjct: 311 IDELSHVINFNLPNIPETYVHRI-GRTGRAGLSGTAISFCEVDEVPFLRDIEKLIGKS 367


>gi|218895359|ref|YP_002443770.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
 gi|228906018|ref|ZP_04069910.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 200]
 gi|228937529|ref|ZP_04100171.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228970416|ref|ZP_04131071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228976986|ref|ZP_04137394.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           Bt407]
 gi|218543277|gb|ACK95671.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
 gi|228782733|gb|EEM30903.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           Bt407]
 gi|228789302|gb|EEM37226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228822140|gb|EEM68126.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228853621|gb|EEM98386.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 200]
 gi|326938018|gb|AEA13914.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 529

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 160/433 (36%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTNKEAV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G  ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMP-KFLIAQPELHDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +  + L     + + +LE          A
Sbjct: 359 TKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|52144993|ref|YP_081836.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
 gi|81689748|sp|Q63GX5|CSHA_BACCZ RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|51978462|gb|AAU20012.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
          Length = 528

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 161/433 (37%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTHKESV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G+ ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMPKFLIAQPEL-HDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +    +A  +   + +LE          A
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|75760678|ref|ZP_00740704.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228898976|ref|ZP_04063254.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 4222]
 gi|74491828|gb|EAO55018.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228860669|gb|EEN05051.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 4222]
          Length = 521

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 160/433 (36%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTNKEAV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G  ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMP-KFLIAQPELHDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +  + L     + + +LE          A
Sbjct: 359 TKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|229593065|ref|YP_002875184.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens SBW25]
 gi|229364931|emb|CAY53031.1| ATP-independent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 461

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 93/456 (20%), Positives = 182/456 (39%), Gaps = 52/456 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ +   T+ Q  ++  IL+ +        I Q   GSGKT    I +   +     G
Sbjct: 21  LDSLGYVEMTQIQAQSLPVILKGLD------LIAQAKTGSGKTAAFGIGLLNPINPRYFG 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA Q  + I++  +    I V  + G +    +  +LE      AH+I+
Sbjct: 75  CQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSLGPQIASLEH----GAHVIV 130

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q  ++   L+L  ++        + L +        + +    P  +TL+ ++ 
Sbjct: 131 GTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDI-ISKTPPRRQTLLFSAT 189

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
             + I ++  K       + V       D+ IE+    +S  ++   +   +   +    
Sbjct: 190 YPVSIKQLASKFMRAP--QQVKAEAFHSDDQIEQRFYEISPEERMEAVTKVLAHFRPASC 247

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + V E  + L     S++ + HG +   D++ V+  F N +  +L+AT V   
Sbjct: 248 VAFCFTKQQVQETVDHLTAKGISAVGL-HGDLEQRDRDQVLAMFANRSTSVLVATDVAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS--------- 604
           G+D+    ++I           +H++ GR GR  E    I L  P  +  +         
Sbjct: 307 GLDIDSLDMVINVELARDSEIHIHRV-GRTGRAGETGIAISLVAPSEAHRAQAIEQLQKS 365

Query: 605 ---YTRLSVLKNTEDG--------FLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPEL 651
              + +L  LK    G          IA     + + G+ILG    ++G+P   + +  +
Sbjct: 366 PLNWDQLDNLKPQSGGPLLPQMSTLCIAAGRKDKVRPGDILGALTGEAGIPGAQVGKIAI 425

Query: 652 HD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            D  + + + R  AK  L +  D   ++G+S+R+ +
Sbjct: 426 FDFQAFVAVERGIAKQALQRLND-GKIKGRSLRVRI 460


>gi|194387478|dbj|BAG60103.1| unnamed protein product [Homo sapiens]
          Length = 603

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/368 (22%), Positives = 141/368 (38%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L  +     M+ + Q   GSGKTL  L+     +          G  
Sbjct: 105 EPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHINHQPFLERGDGPI 158

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER       I I T 
Sbjct: 159 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 214

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 215 GRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 274

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I   E  A      I  V   + + +++I  ++ ++SE +    
Sbjct: 275 VRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTI 334

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +  + +       R   E    +      ++ I HG  S  +++ V++ FK+G   +LIA
Sbjct: 335 VFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLNEFKHGKAPILIA 386

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +  +     +H++ GR  R  +  +    + P   K     
Sbjct: 387 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDL 445

Query: 608 LSVLKNTE 615
           +SVL+   
Sbjct: 446 ISVLREAN 453


>gi|15614947|ref|NP_243250.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
 gi|10175004|dbj|BAB06103.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
          Length = 539

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 146/369 (39%), Gaps = 34/369 (9%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           G+  +K +  + F  P+  Q  AI  IL           I Q   G+GKT    I +   
Sbjct: 14  GEEIKKAIIEMGFEEPSPIQAKAIPAILAG------GDVIGQAQTGTGKTAAFGIPVVEK 67

Query: 318 VEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           V  G   QA+I+ P   LA Q    I+K +++ +I    I G     H+ KAL++     
Sbjct: 68  VSTGRHVQALILTPTRELAIQVSGEIQKLSKHKKIRTLPIYGGQSIVHQIKALKQ----G 123

Query: 376 AHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLL 425
             ++IGT     D ++   LIL  V        DE    G    +   L Q       LL
Sbjct: 124 VQVVIGTPGRIIDHLRRKTLILDHVNTVILDEADEMLDMGFIDDIESILRQVKNERQTLL 183

Query: 426 MTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT  P  + L    + D     I  +      I      +   +++    +++ SE  
Sbjct: 184 FSATMPPAIKKLSRKYMNDPQTVSINRREVTAPSIDQFYYKVLERNKLDSLCRIIDSEQI 243

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  + +       + V E   +L      +  + HG ++   +++VM  F++ + +
Sbjct: 244 DLGILFCRTK-------KGVAELTEALQARGYIADGL-HGDLTQSQRDAVMRKFRDSSIE 295

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
            LIAT V   GIDV + S +I  +      + +H++ GR GR       + L  P   K+
Sbjct: 296 FLIATDVAARGIDVGNVSHVINYDIPQDPESYVHRI-GRTGRAGRKGLALTLVTPREMKH 354

Query: 604 SYTRLSVLK 612
             +    +K
Sbjct: 355 LRSIEQEIK 363


>gi|19528473|gb|AAL90351.1| RE28061p [Drosophila melanogaster]
          Length = 798

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/390 (17%), Positives = 134/390 (34%), Gaps = 50/390 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  I+           +     GSGKT   L+ +   +             
Sbjct: 317 KPTPVQKHAIPIIINGRD------LMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTR 370

Query: 319 -----EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                +     +++AP   LA Q +E  KK+   +++   ++ G    + + + L+R   
Sbjct: 371 QYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDR--- 427

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+I+ T    +D I   K+ L  +     DE  R          Q       L M  
Sbjct: 428 -GCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEP--QIRRIVEQLNMPP 484

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++     I ++             +  +    E I +  + + E  K  ++
Sbjct: 485 TGQRQTLMFSATFPKQIQELASDFLSNYTFL-AVGRVGSTSENITQTILWVYEPDKRSYL 543

Query: 489 CPQIEEKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              +   ++                +   +            +  IHG  +  ++E  + 
Sbjct: 544 LDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALR 603

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G C +L+AT V   G+D+     +I  +        +H++ GR GR   +      
Sbjct: 604 CFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRI-GRTGRMGNLGVATSF 662

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           ++          L +L  T+       ED+
Sbjct: 663 FNEKNRNICSDLLELLIETKQEIPSFMEDM 692


>gi|188583653|ref|YP_001927098.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179347151|gb|ACB82563.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 501

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 125/346 (36%), Gaps = 42/346 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  +L       R   +     G+GKT    + M   +E G       + +
Sbjct: 23  EPTPIQAQAIPHVLA------RRDVLGIAQTGTGKTAAFTLPMLTMLETGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  ++Y  N ++ V +I G +  A +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTR----GTDVLIATPGR 132

Query: 386 FQDSIQYYKL-----ILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRT- 434
             D  +  KL      L+++DE  R      +   ++           L  +AT  P   
Sbjct: 133 LLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPEIE 192

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVII----PINRIDEVIERLKVVLSEGKKAYWIC 489
            L    L +    ++    +    I+  ++      +   +++  L     E +     C
Sbjct: 193 RLADMFLHNPQRVEVARPSSTATTIEQRLVATGAEGHEKRKILRHLIRSADELQNGIIFC 252

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +  V            ++A +HG M    + + +D F++G   LL+A+ 
Sbjct: 253 NR---------KRDVALLQKSLASHGFNVAALHGDMDQRARTAALDGFRSGEVPLLVASD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           V   G+D+   S +   +  H     +H++ GR GR         L
Sbjct: 304 VAARGLDIPAVSHVFNFDVPHHPEDYVHRI-GRTGRAGRAGHAFTL 348


>gi|149194827|ref|ZP_01871921.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
           TB-2]
 gi|149134986|gb|EDM23468.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
           TB-2]
          Length = 460

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 95/447 (21%), Positives = 173/447 (38%), Gaps = 43/447 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           L  I F  P+  QE AI  IL+          + Q   G+GKT    + + + ++   +A
Sbjct: 16  LEEIGFEKPSPIQEKAIPVILEGKDV------VAQAQTGTGKTAAFGLPILSKIKKDEKA 69

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I ++ +   +    + G      + K +E      +  II T  
Sbjct: 70  LIITPTRELAIQVSEEIFRFGKYLGVHTATVYGGSSYNRQIKHIE-----NSQFIIATPG 124

Query: 385 LFQDSIQYYK-------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-R 433
              D ++  K       +IL   DE    G     +       +    LL +AT P P +
Sbjct: 125 RLLDLLKSGKIDIAPKYVILDEADEMLDMGFLDDIKEIFKFVPSNRQTLLFSATMPEPIK 184

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L  T L + +   IT K    + IK     I+  +     ++++  +      +  +  
Sbjct: 185 NLAKTILKNPEFITITRKQVTNENIKEYFYVIDEFERKDALIRLIDYKNPTKSIVFCRT- 243

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+               +HG M    +E V+  FK+   ++L+AT V   
Sbjct: 244 -------KKDVDDIAEFLSGAGFDAKGLHGDMDQRKREEVIRGFKSDRIEILVATDVAAR 296

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP----PLSKNSYTRLS 609
           G+DV + S +   +      + +H++ GR GR  +    I L  P     L++       
Sbjct: 297 GLDVNNVSHVFNYHLPLDPESYVHRI-GRTGRAGKEGMAISLVTPHEFRALNRIQKISKI 355

Query: 610 VLKNTEDGFLIAE-EDLKQRKEGEILGIKQSGMPKF--LIAQPELHDSLLEIARKDAKHI 666
           +LK       +A+ +D + +K  + L       PK   +I + +    L+ IA K A  +
Sbjct: 356 ILKEIP---TLADVKDKEIQKIIDKLSNI-DPTPKSIEIIEELQNEYDLMTIAIKLASML 411

Query: 667 LTQDPDLTSVRGQSIRILLYLYQYNEA 693
             ++ D     G+SI+    L +  ++
Sbjct: 412 FDKESDGKDRIGKSIKEAKRLIEREKS 438


>gi|75076425|sp|Q4R6M5|DDX5_MACFA RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|67969804|dbj|BAE01250.1| unnamed protein product [Macaca fascicularis]
          Length = 614

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 157/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVETY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 217 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  ++  V++
Sbjct: 334 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERGWVLN 385

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 444

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 445 FTPNNIKQVSDLISVLREAN 464


>gi|21243540|ref|NP_643122.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109105|gb|AAM37658.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 632

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 93/450 (20%), Positives = 162/450 (36%), Gaps = 45/450 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q + I  +L           + Q   G+GKT    + + +  +      QA+++A
Sbjct: 31  SPSPIQAATIPALLAGRDV------LGQAQTGTGKTAAFALPVLSNADLNQVKPQALVLA 84

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY +      V  + G  P A +  AL+R      H+++GT     
Sbjct: 85  PTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR----GVHVVVGTPGRVI 140

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP--RTL 435
           D +        Q   L+L   DE  R G    ++  L +      V L +AT  P  R +
Sbjct: 141 DHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATMPPAIRRI 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E      I  + +  
Sbjct: 201 AQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFARTKAA 260

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E       E    L     ++ AI +G M    +E  +   K+G   +L+AT V   G+
Sbjct: 261 TE-------ELAQKLQARGMAAAAI-NGDMQQAAREKTIAQLKDGKLDILVATDVAARGL 312

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P       +     +   
Sbjct: 313 DVERISHVLNYDIPYDTESYVHRI-GRTGRAGRNGDAILFVTPREKGMLRSIERATRQPI 371

Query: 616 DGFLIAEED-----LKQRKEGEILGIKQSGMPKFLIAQPELHDS-----LLEIARKDAKH 665
           +   +   D        R    I      G         + +++      ++IA   AK 
Sbjct: 372 EEMQLPSVDAVNDTRVARFMTRITETLAGGQIDMYRDLLQRYEAENNVPAIDIAAALAKL 431

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           +    P L +   + +R      Q NE   
Sbjct: 432 LQGDAPFLLTPPVRGVREESAPRQRNERAD 461


>gi|195126028|ref|XP_002007476.1| GI12369 [Drosophila mojavensis]
 gi|193919085|gb|EDW17952.1| GI12369 [Drosophila mojavensis]
          Length = 794

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 83/366 (22%), Positives = 137/366 (37%), Gaps = 39/366 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q   +   L           +     GSGKTL  ++     +          G  
Sbjct: 165 KPTAIQAQGMPIALSGRD------LVAVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPI 218

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  NTQ+    I G  P+  + + LER       I+I T 
Sbjct: 219 ALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQQARDLER----GVEIVIATP 274

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 275 GRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKE 334

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWIC 489
            R L    L +     I             I+ +    E I +L  +L++  G+      
Sbjct: 335 VRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDESEKIVKLIQLLTQISGENETKTI 394

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +E KK  +     E   ++      + AI HG  S  +++ V+ SF+NG   +L+AT 
Sbjct: 395 IFVETKKRVD-----EITRNISRQGWRACAI-HGDKSQQERDFVLSSFRNGRHSILVATD 448

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV D   +I  +        +H++ GR GR     +   L+    +  +   + 
Sbjct: 449 VAARGLDVDDVKFVINYDYPSNSEDYVHRI-GRTGRSNNTGTAYTLFTHSNANKANDLIQ 507

Query: 610 VLKNTE 615
           VL+   
Sbjct: 508 VLREAN 513


>gi|195499159|ref|XP_002096830.1| bel [Drosophila yakuba]
 gi|194182931|gb|EDW96542.1| bel [Drosophila yakuba]
          Length = 792

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/390 (17%), Positives = 135/390 (34%), Gaps = 50/390 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  I+           +     GSGKT   L+ +   +             
Sbjct: 312 KPTPVQKYAIPIIINGRD------LMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTR 365

Query: 319 -----EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                +     +++AP   LA Q +E  KK+   +++   ++ G    + + + L+R   
Sbjct: 366 QYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDR--- 422

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+I+ T    +D I   K+ L  +     DE  R          Q       L M  
Sbjct: 423 -GCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEP--QIRRIVEQLNMPP 479

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++     I ++         I   +  +    E I +  + + E  K  ++
Sbjct: 480 TGQRQTLMFSATFPKQIQELASDFL-SNYIFLAVGRVGSTSENITQTILWVYEPDKRSYL 538

Query: 489 CPQIEEKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              +   ++                +   +            +  IHG  +  ++E  + 
Sbjct: 539 LDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALR 598

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G C +L+AT V   G+D+     +I  +        +H++ GR GR   +      
Sbjct: 599 CFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRI-GRTGRMGNLGVATSF 657

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           ++          L +L  T+       ED+
Sbjct: 658 FNEKNRNICSDLLELLIETKQEIPSFMEDM 687


>gi|254521627|ref|ZP_05133682.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
 gi|219719218|gb|EED37743.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
          Length = 648

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 92/451 (20%), Positives = 163/451 (36%), Gaps = 51/451 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +P+  Q + I  +L+          + Q   G+GKT    + + + ++      QA+I+A
Sbjct: 31  TPSPIQAATIPAMLEGRDV------LGQAQTGTGKTAAFALPVLSNIDLQQIKPQALILA 84

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  + Y+ +     V  + G  P   +  AL R      HI++GT     
Sbjct: 85  PTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALRR----GVHIVVGTPGRVI 140

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRT--L 435
           D +            L+L   DE  R G    ++  L +      V L +AT  P+   +
Sbjct: 141 DHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATMPPQIRRI 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E   A  I  +    
Sbjct: 201 AQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEVEPFDAMIIFART--- 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E   S  +    + A I+G M    +E  +   K G   +L+AT V   G+
Sbjct: 258 -----KAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAARGL 312

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P             +   
Sbjct: 313 DVERISHVLNYDIPYDTESYVHRI-GRTGRAGRSGEAILFATPREKGMLRQIERATRQPI 371

Query: 616 DGFLI----AEEDLKQRKE----GEILGIKQSGMPKFLIAQPELHDS-----LLEIARKD 662
           +   +    A  D +  K      E LG   +G   F     E  ++      +E+A   
Sbjct: 372 EEMQLPSVEAVNDTRINKFTTRITETLG---AGGLDFYRQLLERFENEQNVPAIEVAAAL 428

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           AK +    P L     ++ R      +  + 
Sbjct: 429 AKMLQGDTPFLLQPPVRAPREERAPRERFDR 459


>gi|167625497|ref|YP_001675791.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167355519|gb|ABZ78132.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 492

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 148/396 (37%), Gaps = 45/396 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L+          +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQAQAIPAVLEGKDV------MAAAQTGTGKTAGFTLPLLELLSKGTKAPAKQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y Q   +   +I G +    +   L R       I++ T  
Sbjct: 77  LVLTPTRELAAQIGESVEVYGQFLPLKSAVIFGGVGIGPQITKLNR----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++ + +L ++++DE  R      +   +K      +L       + L+ ++
Sbjct: 133 RLLDLYNQRAVSFSQLEVLVLDEADRMLDMGFIHDIKK------ILAILPAKRQNLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               DI ++  K     P++  + P N     +++    +  G+K   +   I++     
Sbjct: 187 TFSDDIRQLA-KGLVNNPVEISVTPRNATANTVKQWICPVDHGQKVAVLIELIKQNDWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E    + A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANRLAKNLEAKGITAAAIHGNKSQGARTKALADFKSGAVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++  +  +     +H++ GR GR       + L      K       ++K 
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGHAVSLVSSEEIKLLRDIELLIKQ 364

Query: 614 TE-----DGFL----IAEEDLKQRKEGEILGIKQSG 640
                  +GF     + E DL  +  G+  G + SG
Sbjct: 365 NLERRPVEGFEPTHSLPETDLTGKSHGQNKGPRNSG 400


>gi|90416628|ref|ZP_01224559.1| putative ATP-dependent RNA helicase RhlE [marine gamma
           proteobacterium HTCC2207]
 gi|90331827|gb|EAS47055.1| putative ATP-dependent RNA helicase RhlE [marine gamma
           proteobacterium HTCC2207]
          Length = 549

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 141/376 (37%), Gaps = 42/376 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +P+  Q  AI  +L           +     G+GKT    + +   + AG +A       
Sbjct: 24  TPSPIQAKAIPAVLDGRDV------MAAAQTGTGKTAGFTLPILQLLSAGKRAQPNQVRT 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +  Y ++  +   ++ G +    +   L R       +++ T  
Sbjct: 78  LILTPTRELAAQVGESVATYGKHMSLSSAVVFGGVKINPQMMKLRR----GVDVLVATPG 133

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L ++++DE  R      +   ++       +++  P  R  ++ S
Sbjct: 134 RLMDLYSQNAVKFTYLEVLVLDEADRMLDMGFIHDIKR-------IISLLPKRRQNLMFS 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     PI+  + P N     + +    + + +KA  +   I + K   
Sbjct: 187 ATFSDDIRKLAKGLVHNPIEISVTPRNATAPTVTQSIYTVDKKQKAGVLTRLIHDNKWGQ 246

Query: 500 FRSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                +     N L +H  +     A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 247 ALVFTKTKHGANKLTKHLEAEGIVAAAIHGNKSQGARTKALAGFKAGEVRILVATDIAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLS 609
           G+D+     ++  +  +     +H++ GR GR     + I L        LS        
Sbjct: 307 GLDIEQLPQVVNFDLPNVAEDYVHRI-GRTGRAGSTGTAISLVSADEVDLLSDIERLTQK 365

Query: 610 VL-KNTEDGFLIAEED 624
           +L +   DGF  +  D
Sbjct: 366 LLPREVMDGFEPS-HD 380


>gi|229188506|ref|ZP_04315550.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           10876]
 gi|228594969|gb|EEK52744.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           10876]
          Length = 528

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 160/433 (36%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTNKEAV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G  ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMP-KFLIAQPELHDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +  + L     + + +LE          A
Sbjct: 359 TKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|241148964|ref|XP_002405951.1| ATP-dependent helicase (DEAD box), putative [Ixodes scapularis]
 gi|215493784|gb|EEC03425.1| ATP-dependent helicase (DEAD box), putative [Ixodes scapularis]
          Length = 685

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 156/448 (34%), Gaps = 68/448 (15%)

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPIN---VEGKIAQKILRNIPFSPTKSQESAIKD 283
           R   +     Q   + +R +      +            + I      +PT  Q      
Sbjct: 89  RSEEEIEQHRQQHEMTLRGRDVPRPILTFQEGCFPDYCMKMIETQNYTTPTAIQSQGWPI 148

Query: 284 ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQ 335
            L        M+ I Q   GSGKTL  ++     +          G  A+++AP   LAQ
Sbjct: 149 AL----SGRDMVGIAQ--TGSGKTLAYILPAIVHITHQPYLQRGDGPMALVLAPTRELAQ 202

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI---------------------AHG 374
           Q  +    + + ++I    + G  P+  + +                             
Sbjct: 203 QIQQVAADFGKASRIRNTCVFGGAPKGSQLRDWREFGALCPASVAVVQRNSQVIVVICRA 262

Query: 375 QAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVL 424
              I I T     D ++  K        L+L   D     G + +++    Q       L
Sbjct: 263 GVEICIATPGRLIDFLEAGKVNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDCQTL 322

Query: 425 LMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRKPIKTVII--PINRIDEVIERLKVV 478
           + +AT     R+L    L D     I   +  A  + ++ V +    ++ ++++E  K +
Sbjct: 323 MWSATWPKEVRSLAEDFLKDYIQVNIGALQLCANHRIVQIVDVCQESDKENKLMELHKEI 382

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++E      I            + V E    +  +   SI I HG  S  +++ V++ F+
Sbjct: 383 INEQDNKTLIF-------AETKKKVDELTRRMRRNGWPSICI-HGDKSQSERDWVLNEFR 434

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L+AT V   G+DV D   +I  +  H     +H++ GR  R  +  +    + P
Sbjct: 435 SGRSPILVATDVAARGLDVDDIRFVINYDYPHCSEDYIHRI-GRTARSNKTGTAYTFFTP 493

Query: 599 PLSKNSYTRLSVLKNTEDG-----FLIA 621
              K +   ++VLK          F IA
Sbjct: 494 GNMKQAKELIAVLKEANQAINPKLFEIA 521


>gi|82702922|ref|YP_412488.1| DEAD/DEAH box helicase-like [Nitrosospira multiformis ATCC 25196]
 gi|82410987|gb|ABB75096.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
           25196]
          Length = 472

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 144/372 (38%), Gaps = 43/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  QE AI ++L           +     G+GKT   ++     + +       G + 
Sbjct: 23  SPTPIQEQAIPELLTGHDV------LASAQTGTGKTAAFMLPALHRLASPSQVRSRGPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  E   KY +      V  I G MP   + K L ++      I++ T 
Sbjct: 77  LVLTPTRELALQVSEATAKYGKYLPRAKVVSILGGMPYPLQNKLLSQV----VDILVATP 132

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D IQ     + +L ++++DE  R      ++  ++       + +ATP   +TL+ 
Sbjct: 133 GRLIDHIQRGRIDFSRLEMLVLDEADRMLDMGFIEDVER-------IASATPATRQTLLF 185

Query: 438 TSLGDIDISKITEKPAGRKP---IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++  D  +  +  +         + T    +N I++ +  +  +  + +    +   IE 
Sbjct: 186 SATLDSAMDNVAARLLNSPKRIQVATSKARLNNIEQRLHYVDDISHKNQLLDHLLRDIEL 245

Query: 495 KKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           K+   F +     + L +  ++   + A +HG MS  D+   +   + G  ++L+AT V 
Sbjct: 246 KQAIVFTATKRDADMLADGLSAQGHAAAALHGDMSQRDRNRTLIKLRQGGIRVLVATDVA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV   + +I  +   F    +H++ GR GR       +         +        
Sbjct: 306 ARGIDVAGITHVINFDLPKFAEDYVHRI-GRTGRAGASGIAVSFASSKDGIHLKKIERF- 363

Query: 612 KNTEDGFLIAEE 623
                G  IA  
Sbjct: 364 ----TGQRIASH 371


>gi|42522912|ref|NP_968292.1| ATP-dependent RNA helicase DbpA [Bdellovibrio bacteriovorus HD100]
 gi|39574108|emb|CAE79285.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 505

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/461 (17%), Positives = 169/461 (36%), Gaps = 62/461 (13%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG- 322
           +++ + F   T  Q+ +I  +L           I Q   GSGKT    + +   +     
Sbjct: 61  VVQELGFETLTPIQQESIPLLLAGKD------IIGQAKTGSGKTAAFSLPILNKINLDQP 114

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
             QA+I+ P   LA Q    I+K  +    + V  +TG      +  ALE        I+
Sbjct: 115 LLQALILCPTRELASQVVTEIRKLGRRLPGLKVLAMTGGQSGREQADALEN----GVQIV 170

Query: 380 IGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTAT 429
           +GT     D +   ++ L  V        D+    G    +K  +     +   +L +AT
Sbjct: 171 VGTPGRLADFVGRNRIDLSAVKTVVLDEADKMLDMGFADEIKTVMRDLPGSRQTVLFSAT 230

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                  L+        ++  +   +  I+ ++      D+    ++++      +  I 
Sbjct: 231 FPESIEHLSRKYQRHAQQVIIEDEEQNLIEQLVYDSEDNDKTNVLMRILQQHPSDSTIIF 290

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N ++ V           ++   +HG M   +++ VM  F+NG+ ++L+AT 
Sbjct: 291 --------CNTKNAVAEIAERLNDLGAASGCLHGDMEQRERDRVMAMFRNGSHRILVATD 342

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +  ++I  +        +H++ GR GR  +    + + HP  +        
Sbjct: 343 VAARGLDIDNLELVINFDLPLSPEIYVHRI-GRTGRAGKTGVAVTIAHPKDTLKLGQFEE 401

Query: 610 V----LKNTEDGFL------------------IAEEDLKQRKEGEILGI---KQSGMPKF 644
           +          GF                   I+     + + G+ILG       G+   
Sbjct: 402 LTGGKFARPSLGFKNQYGLNKTLKEAPMKTISISGGRKDKLRPGDILGALTGAAGGLTSA 461

Query: 645 LIAQPELHDSL--LEIARKDAKHILTQDPDLTSVRGQSIRI 683
            + + E+ D +  + ++ K A   + +  D   ++GQ  ++
Sbjct: 462 DVGKIEIQDKISFVAVSAKVADGAMQKLRD-GRIKGQKFQV 501


>gi|134096391|ref|YP_001101466.1| putative cold-shock DeaD box ATP-dependent RNA helicase (partial
           match) [Herminiimonas arsenicoxydans]
 gi|133740294|emb|CAL63345.1| putative ATP-dependent RNA helicase DeaD-like [Herminiimonas
           arsenicoxydans]
          Length = 826

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 137/387 (35%), Gaps = 47/387 (12%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   ++L+ + +  P+  Q + I  +L +         + Q   G+GKT    + + + 
Sbjct: 15  SEPLLRVLKELGYEAPSPIQAATIPLLLNN------SDVLGQAQTGTGKTAAFALPILSR 68

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAH 373
           ++      QA+++AP   LA Q  E  ++Y  +     V  I G      +  AL R   
Sbjct: 69  IDIKQTTPQALVLAPTRELAIQVAEAFQRYASHIPGFHVLPIYGGQSYGAQLSALRR--- 125

Query: 374 GQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
              H+++GT     D ++   L        +L   DE  R G    +           +L
Sbjct: 126 -GVHVVVGTPGRVIDHLEKGSLDLSKLKTMVLDEADEMLRMGFIDDV---------ETIL 175

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
                  +T + ++     I +I         + TV       D + +  +  L  G + 
Sbjct: 176 QKTPEARQTALFSATMPSAIKRIATTYLRDPELITVAAKTGTADNIRQ--RYWLVSGMQK 233

Query: 486 YWICPQIEEKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
                +I E +  +        +   E      +    S A I+G +    +E  +   K
Sbjct: 234 LEALTRILEAETFDGMIIFARTKLGTEELAGKLQARGFSAAAINGDIQQQQRERTIQQLK 293

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L+AT V   G+DV   S +I  +  H   +  H++ GR GR       IL   P
Sbjct: 294 DGKIDILVATDVAARGLDVERISHVINYDVPHDPESYTHRI-GRTGRAGRSGEAILFIAP 352

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDL 625
                        +       IA  DL
Sbjct: 353 RERNLLKAIERATRQ-----PIAVLDL 374


>gi|124360402|gb|ABN08415.1| Helicase, C-terminal [Medicago truncatula]
          Length = 499

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 156/430 (36%), Gaps = 49/430 (11%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-- 269
           P   K+F   SP+   +   E+        L R+   +   +P  V+          +  
Sbjct: 53  PHFEKNFYSESPSVRAMTEAEVTEY----RLRREITVEGKDVPKPVKSFSDAAFPDYVLE 108

Query: 270 -----PF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
                 F  PT  Q       L+          I   + GSGKTL  L+     V A   
Sbjct: 109 EVKKAGFVEPTPIQSQGWPMALKGRD------LIGIAETGSGKTLAYLLPAIVHVNAQPI 162

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +++AP   LA Q  +   K+  +++I    I G +P+  + + L++     
Sbjct: 163 LDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQK----G 218

Query: 376 AHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
             III T     D ++       ++  +++DE  R          +K  +         P
Sbjct: 219 VEIIIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIR------P 272

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +TL  ++    ++ ++  +         +     + +  I++   ++ E +K   +  
Sbjct: 273 DRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVK 332

Query: 491 QIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            +E+  +        + +   ++              IHG  S  +++ V+  FK+G   
Sbjct: 333 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSP 392

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           ++ AT V   G+DV D   +I  +        +H++ GR GR     +    +    ++ 
Sbjct: 393 IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRI-GRTGRAGAKGTAYTFFTAANARF 451

Query: 604 SYTRLSVLKN 613
           +   +S+L+ 
Sbjct: 452 AKELISILEE 461


>gi|307823522|ref|ZP_07653751.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307735507|gb|EFO06355.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 462

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 174/446 (39%), Gaps = 65/446 (14%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           + ++ ++  T  Q  ++  IL+          I Q   GSGKT    I + + ++     
Sbjct: 19  IESLGYTHLTPIQAESLPHILEGRDV------IAQAKTGSGKTAAFGIGLLSKLDLNSFR 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  + TQ I V  + G +P   +R +LE       H+++
Sbjct: 73  VQAMVVCPTRELADQVCKEIRRLARFTQNIKVLTLCGGVPFGPQRASLEH----GVHVVV 128

Query: 381 GTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    Q+ +            L+L   D     G ++ +         H          
Sbjct: 129 GTPGRLQEHLGKRSLRLSNLKVLVLDEADRMLDMGFEEAITDVISYAPTH---------R 179

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I +I++K    KP+ +V I  +  D  IE+    + + K+   +   +
Sbjct: 180 QTLLFSATYTDPIREISQKF-QFKPV-SVSIETSHHDSDIEQRFYQVEKSKRTNALGYLL 237

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              +        N +   +   S  E+   ++  +HG +   D++ V+  F N +C +L+
Sbjct: 238 SYYRPESTVVFCNTKRDCQDVASSLENSGFTVQALHGDLEQKDRDQVLVRFSNKSCSVLV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL------ 600
           AT V   G+D+ D   +I  +        +H++ GR GR  +    + L           
Sbjct: 298 ATDVAARGLDIKDMQAVINYDLPWDPEIYVHRI-GRTGRAGKKGLALSLCTEQELNRVKA 356

Query: 601 ------SKNSYTRLSVLK-NTEDGFLIAEEDLKQ---RK----EGEILG--IKQSGMPKF 644
                 +   +  ++  + + E  F      L     RK     G+ILG     +G+   
Sbjct: 357 IEEYQNTPAKWDEVAPFQMSHEQRFEPPMVTLWIDGGRKNKVRPGDILGALTGDAGIAGS 416

Query: 645 LIAQPELHD--SLLEIARKDAKHILT 668
            + + ++ D  + + I R      L 
Sbjct: 417 EVGKIDIFDAHAYVAIKRDSVDKALA 442


>gi|66522071|ref|XP_624210.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Apis mellifera]
          Length = 772

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 139/401 (34%), Gaps = 46/401 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              +  + + I +N    PT  Q  A+   L           I     GSGKT   +  M
Sbjct: 260 FGFDDALIKAIRKNEYTQPTPIQAQAVPAALSGRD------IIGIAKTGSGKTAAFIWPM 313

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   +I+AP   L+QQ Y+  +K+ +   + V    G   +  + K
Sbjct: 314 LVHIMDQRELKEGDGPIGLILAPTRELSQQIYQEARKFGKVYNVQVCCCYGGGSKWEQSK 373

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK- 417
           ALE    G A I++ T     D ++           L+L   D     G + +++     
Sbjct: 374 ALE----GGAEIVVATPGRIIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNH 429

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG--RKPIKTVII-----PINRID 469
                  LL +AT   R   L      D  +I +   G     +   +I     P  +  
Sbjct: 430 VRPDRQTLLFSATFKKRVEKLARDVLTDPVRIVQGDVGEANADVTQHVIVFNNNPTGKWT 489

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            +++ L   LS G    ++            +   E   +  +     + ++HG M  I+
Sbjct: 490 WLLQNLIEFLSAGSLLIFV----------TKKLNAEELANNLKLKEFDVLLLHGDMDQIE 539

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +  V+ +FK      L+AT V   G+D+     ++  +         H++ GR GR  E 
Sbjct: 540 RNKVITAFKKKEVSTLVATDVAARGLDIPHIRTVLNYDVARDIDTHTHRI-GRTGRAGEK 598

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
            +   L      + +   +  L+        +  DL  +  
Sbjct: 599 GTAYTLVTEKDKEFAGHLVRNLEGANQEVPKSLMDLAMQSA 639


>gi|289668227|ref|ZP_06489302.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 640

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 91/457 (19%), Positives = 164/457 (35%), Gaps = 59/457 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q + I  +L           + Q   G+GKT    + + +  +      QA+++A
Sbjct: 31  SPSPIQAATIPALLSGRDV------LGQAQTGTGKTAAFALPVLSNADLNQLKPQALVLA 84

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY +      V  + G  P A +  AL+R      H+++GT     
Sbjct: 85  PTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR----GVHVVVGTPGRVI 140

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVL 437
           D +        Q   L+L   DE  R G    ++  L +      V L +AT  P    +
Sbjct: 141 DHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPPAICRI 200

Query: 438 TSLGDIDISKIT-----EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
                 D +++T        A  +     +  ++++D +   L+V   +G   +      
Sbjct: 201 AQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA----- 255

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   ++  E      +    + A I+G M    +E  +   K+G   +L+AT V  
Sbjct: 256 ------RTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAA 309

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   S ++  +  +   + +H++ GR GR       IL   P       +     +
Sbjct: 310 RGLDVERVSHVLNYDIPYDTESYVHRI-GRTGRAGRNGDAILFVTPREKGMLRSIERATR 368

Query: 613 NTEDGFLIAEED--LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE------------I 658
              +   +   D     R    +  I +S        Q +++  LL+            I
Sbjct: 369 QPIEEMQLPSVDAVNDTRVARFMTRITES----LAGGQIDMYRDLLQRYETENNVPAIDI 424

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           A   AK +    P L +   +  R      + NE   
Sbjct: 425 AAAMAKLLQGDSPFLLTPPVRGAREEFAPRERNERAD 461


>gi|195376137|ref|XP_002046853.1| GJ12262 [Drosophila virilis]
 gi|194154011|gb|EDW69195.1| GJ12262 [Drosophila virilis]
          Length = 778

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 83/366 (22%), Positives = 137/366 (37%), Gaps = 39/366 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q   +   L           +     GSGKTL  ++     +          G  
Sbjct: 164 KPTAIQAQGMPIALSGRD------LVAVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPI 217

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  NTQ+    I G  P+  + + LER       I+I T 
Sbjct: 218 ALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQQARDLER----GVEIVIATP 273

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 274 GRLIDFLERGTTTLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKE 333

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWIC 489
            R L    L +     I             I+ +    E I +L  +L++  G+      
Sbjct: 334 VRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDESEKIVKLIQLLTQISGENETKTI 393

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +E KK  +     E   ++      + AI HG  S  +++ V+ SF+NG   +L+AT 
Sbjct: 394 IFVETKKRVD-----EITRNISRQGWRACAI-HGDKSQQERDFVLSSFRNGRHSILVATD 447

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV D   +I  +        +H++ GR GR     +   L+    +  +   + 
Sbjct: 448 VAARGLDVDDVKFVINYDYPSNSEDYVHRI-GRTGRSNNTGTAYTLFTNSNANKANDLIQ 506

Query: 610 VLKNTE 615
           VL+   
Sbjct: 507 VLREAN 512


>gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 550

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 131/346 (37%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +P+  Q  AI  +LQ          +     G+GKT    + +   +  G +A       
Sbjct: 34  TPSPIQAQAIPAVLQGQDV------MAAAQTGTGKTAGFTLPLLELLSKGQKAQAGQVRT 87

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +   +   ++ G +P   +   L         +++ T  
Sbjct: 88  LVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRH----GVDVLVATPG 143

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 144 RLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRK-------ILAILPKQRQNLMFS 196

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +++    + +G+KA  +   I++     
Sbjct: 197 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKAALLTQLIKQHDWQQ 256

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   +  FKNG  ++L+AT +   
Sbjct: 257 VLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVATDIAAR 316

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+     ++  +  +     +H++ GR GR       + L    
Sbjct: 317 GLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGQAVSLVSSE 361


>gi|198470027|ref|XP_001355197.2| GA19457 [Drosophila pseudoobscura pseudoobscura]
 gi|198147147|gb|EAL32254.2| GA19457 [Drosophila pseudoobscura pseudoobscura]
          Length = 1243

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 151/377 (40%), Gaps = 42/377 (11%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K    +LR + F  PT  Q  AI  I+           I     GSGKTL  ++ M   
Sbjct: 545 SKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRD------LIGIAKTGSGKTLAFILPMFRH 598

Query: 318 VEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +          G  A+IMAP   L  Q  + I++++++  +    + G    + +   L+
Sbjct: 599 ILDQPNLDEGDGAIAIIMAPTRELCMQIGKDIRRFSKSLGLRPVCVYGGTGISEQIAELK 658

Query: 370 RIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           R +     II+ T     D +           ++  V++DE  R                
Sbjct: 659 RGSE----IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVM----- 709

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             ++    P  +T++ ++     +  +  +   +KPI+ ++   + + + +E+  V+L++
Sbjct: 710 -RIIDNVRPDRQTVMFSATFPRQMEALARR-ILKKPIEVIVGGRSVVCKDVEQHVVILND 767

Query: 482 GKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534
             K + +   +   +E      F    E  + L      +      +HG +   D++S +
Sbjct: 768 ESKFFKLLELLGIYQEAGSIIVFADKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTI 827

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR  +  S   
Sbjct: 828 IDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHR-CGRTGRAGKKGSAYT 886

Query: 595 LYHPPLSKNSYTRLSVL 611
              P  S+ +   +  L
Sbjct: 887 FITPEQSRYAGDIIRAL 903


>gi|261404961|ref|YP_003241202.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261281424|gb|ACX63395.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
          Length = 506

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 140/358 (39%), Gaps = 28/358 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + M   +             
Sbjct: 23  APTPIQAQAIPAVLAGRD------LLGCAQTGTGKTAAFSVPMIQLLNQQPPKPGMGRRI 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A++++P   LA Q  + +K Y+Q T++    I G + Q  + +AL++     A I+I T
Sbjct: 77  RALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERALQQ----GADILIAT 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D +    + L  V E        R+           ++       +TL  ++   
Sbjct: 133 PGRLLDLMNQKHVDLQHV-EILVLDEADRMLDMGFIHDVKRIIAKMPSKKQTLFFSATMP 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------ 496
            +I+++ +      P+K  I P++   E IE+   +L  G K   +   +++        
Sbjct: 192 AEITQLVQT-LLHNPVKVEITPVSSTAERIEQSVYLLETGNKQQQLNELMKDPSIVSALV 250

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +  +   +R          +   IHG  S   +++ +++FK+G  ++L+AT +   GID
Sbjct: 251 FTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGATRVLVATDIAARGID 310

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           + + S +I  N  +     +H++ GR GR     + I                ++  +
Sbjct: 311 IDELSHVINFNLPNIPETYVHRI-GRTGRAGLSGTAISFCEVDEVPFLRDIEKLIGKS 367


>gi|194336034|ref|YP_002017828.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308511|gb|ACF43211.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 599

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 140/371 (37%), Gaps = 42/371 (11%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +   + L ++ +  PT  Q   I  IL+          + Q   G+GKT    + + + +
Sbjct: 10  EPLMRALADVGYENPTPIQAQTIPLILEGRDV------LGQAQTGTGKTAAFALPILSNI 63

Query: 319 E---AGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHG 374
           +   A  QA+++AP   LA Q  E  ++Y ++     V  I G      + + L R    
Sbjct: 64  DLEHAEPQALVLAPTRELAIQVAEAFQRYAEHLKGFHVVPIYGGQDYGIQLRMLRR---- 119

Query: 375 QAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVL 424
             HI++GT     D ++           L+L   DE  R G    ++    Q      V 
Sbjct: 120 GVHIVVGTPGRVMDHMRRGSLNLASLKCLVLDEADEMLRMGFIDDVEWILDQTPKGRQVA 179

Query: 425 LMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKT---VIIPINRIDEVIERLKVVL 479
           L +AT  P+ R +    L +     I  K      I+    ++   ++ID +   L+V  
Sbjct: 180 LFSATMPPVIRRIAQKYLHNPAEVTIQTKTTTVDTIRQRYWIVGGSHKIDILTRILEVEP 239

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +G   +                 +E    L      + A+ +G M    +E  +D  KN
Sbjct: 240 FDGMLIFV----------RTKTMTLELAEKLQARGYGAAAL-NGDMPQNQRERTVDQLKN 288

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   ++IAT V   G+DV   S +I  +      + +H++ GR GR       IL   P 
Sbjct: 289 GALSIVIATDVAARGLDVERISHVINYDIPSDTESYVHRI-GRTGRAGRAGDAILFVSPR 347

Query: 600 LSKNSYTRLSV 610
                Y+    
Sbjct: 348 EKNMLYSIERA 358


>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
           E681]
 gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
           polymyxa E681]
          Length = 529

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 93/459 (20%), Positives = 170/459 (37%), Gaps = 68/459 (14%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           +  + F   T  Q  +I   LQ          I Q   G+GKT    I +   +   +  
Sbjct: 17  ITELGFEEATPIQSQSIPIALQGRD------MIGQAQTGTGKTAAFGIPLINKISRSDEK 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+IMAP   LA Q  E I+K ++   +    I G      + +AL++    +  IIIG
Sbjct: 71  IRALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKK----KPQIIIG 126

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I    + L  V        DE    G  + +           +L       +
Sbjct: 127 TPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDI---------QSILKQVPDERQ 177

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    +I ++ E+   + P    +IP      +I++  + + E +K   +   I+
Sbjct: 178 TMLFSATMPANIKRLAEQFL-KNPEHVSVIPKQVSAPLIDQAYIEVPERQKFEALSRLID 236

Query: 494 EKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           +  V+      +    S   +HG +S   +++VM  F++G+  +L+A
Sbjct: 237 MESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVA 296

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN---- 603
           T V   G+DV   + ++  +      + +H++ GR GR  +         P    +    
Sbjct: 297 TDVAARGLDVSGVTHVVNFDLPQDPESYVHRI-GRTGRAGKEGEAWSFVTPREIDHLHFI 355

Query: 604 --------SYTRLSVLKNTEDGFL--IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
                       L  L    +G    IAE  L+  + GE+     +      I   E +D
Sbjct: 356 ERVTRHRIPRKPLPTLAEALEGKQRIIAERLLEAVESGEL-----NEYKGLAIQMLEQYD 410

Query: 654 --SLLEIA--------RKDAKHILTQDPDLTSVRGQSIR 682
              LL  A        R+ +  +  +DP     R   +R
Sbjct: 411 SVQLLSAALKLMTGEKREASIELTPEDPIRAKRRKPDVR 449


>gi|325296847|ref|NP_001191665.1| ATP-dependent RNA helicase DDX5 [Aplysia californica]
 gi|304441889|gb|ADM34180.1| ATP-dependent RNA helicase DDX5 [Aplysia californica]
          Length = 600

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/366 (22%), Positives = 141/366 (38%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
           SPT  Q  A    L        ++ I Q   GSGKTL  ++     V          G  
Sbjct: 127 SPTAIQSQAWPIAL----SGRNLVGIAQ--TGSGKTLGFILPAIVHVNHQPYLEHGDGPI 180

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LAQQ  E   ++ + +Q+    + G  P+  + + LER     A I I T 
Sbjct: 181 VLVLVPTRELAQQVLEVSNEFGRASQLKTACVYGGAPKGPQLRDLER----GAEICIATP 236

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G   Q R  L Q       L+ +AT    
Sbjct: 237 GRLIDFLEAGKTNLRRTTYLVLDEADRMLDMGFEPQIRKILDQIRPDRQTLMWSATWPKE 296

Query: 433 -RTLVLTSLGDIDISKI----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I             I  V +   + +++++ L  ++ E +    
Sbjct: 297 VRRLAEEFLNDYIQVNIGALQLTANHNILQIIDVCMDHEKEEKLVKLLNEIMQEKENKTL 356

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I  + + K +   R +        +     +  IHG  S  +++  ++ F+NG   +L+A
Sbjct: 357 IFVETKRKADDIARRM--------KRDGWPVLSIHGDKSQQERDWALNDFRNGRNPILVA 408

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +  +     +H++ GR GR     +    + P  +K +   
Sbjct: 409 TDVASRGLDVEDIKFVINFDYPNCSEDYVHRI-GRTGRSTNTGTAYTFFTPGNAKQASDL 467

Query: 608 LSVLKN 613
           ++VL+ 
Sbjct: 468 VNVLRE 473


>gi|197337698|ref|YP_002157744.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197314950|gb|ACH64399.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 496

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 147/371 (39%), Gaps = 41/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +++          +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVIEGKDV------MAAAQTGTGKTAGFTLPLLERLSNGPKRKFNQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q +E ++KY++N  +  +++ G +    + + L R       +++ T  
Sbjct: 77  LVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLRR----GVDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     +I++ +L ++++DE  R      +   +K       ++   P  R  +L S
Sbjct: 133 RLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKK-------ILAKLPKNRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K   + P++  +   N   E +E+   V+ +G+K   +   I++     
Sbjct: 186 ATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKLIKDNDWKQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E    S A IHG  S   +   + +FK+G  ++L+AT +   
Sbjct: 246 VLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL-- 611
           G+D+     +I  +        +H++ GR GR       I       +K  +    ++  
Sbjct: 306 GLDIEQLPQVINVDLPKVPEDYVHRI-GRTGRAGATGKAISFVSEDEAKELFAIERLIQK 364

Query: 612 ---KNTEDGFL 619
              ++  +GF 
Sbjct: 365 VLPRHVLEGFE 375


>gi|86134655|ref|ZP_01053237.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85821518|gb|EAQ42665.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 438

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 133/360 (36%), Gaps = 36/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
            P+  QE AI  IL+          +     G+GKT    + +   +           +A
Sbjct: 23  KPSPIQEKAIPHILEGKDV------LASAQTGTGKTAGFTLPVLQYLSETKHPKYRPIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q ++ +++Y++   I   ++ G +  A +   L+R       I++ T  
Sbjct: 77  LVLTPTRELAAQVHDNVREYSKYVNIKSAVVFGGVKAASQIATLKR----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++ + ++ + I+DE  R      ++   K       +++  P  R  ++ S
Sbjct: 133 RLLDLHDQKAVSFKRIDVFILDEADRMLDMGFVRDINK-------IISYMPAKRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                  K       + P++    P N   + +      + + KK  +    I++   + 
Sbjct: 186 ATFSKEIKKLASGILKNPVEVETAPQNSTAKKVSHKVYQIDKKKKTEFTIKLIKDNNWNQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R          S A IHG  S   +   + +FK+ T K+L+AT +   
Sbjct: 246 VLIFTRTKHGANRLTQNLIKSKISAAAIHGNKSQGARTKALKNFKDNTIKVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     +I     +     +H++ GR GR       I L     ++       +L  
Sbjct: 306 GLDIPLLPYVINYELPNVPEDYVHRI-GRTGRAGAKGEAISLVCSEETEYQKEIEKLLNE 364


>gi|67969935|dbj|BAE01315.1| unnamed protein product [Macaca fascicularis]
          Length = 509

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 81/368 (22%), Positives = 141/368 (38%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L  +     M+ + Q   GSGKTL  L+     +          G  
Sbjct: 11  EPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHINHQPFLERGDGPI 64

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER       I I T 
Sbjct: 65  CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 120

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 121 GRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 180

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I   E  A      I  V   + + +++I  ++ ++SE +    
Sbjct: 181 VRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTI 240

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +  + +       R   E    +      ++ I HG  S  +++ V++ FK+G   +LIA
Sbjct: 241 VFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLNEFKHGKAPILIA 292

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +  +     +H++ GR  R  +  +    + P   K     
Sbjct: 293 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQVSDL 351

Query: 608 LSVLKNTE 615
           +SVL+   
Sbjct: 352 ISVLREAN 359


>gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114]
 gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114]
          Length = 500

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 147/371 (39%), Gaps = 41/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +++          +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVIEGKDV------MAAAQTGTGKTAGFTLPLLERLSNGPKRKFNQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q +E ++KY++N  +  +++ G +    + + L R       +++ T  
Sbjct: 77  LVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLRR----GVDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     +I++ +L ++++DE  R      +   +K       ++   P  R  +L S
Sbjct: 133 RLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKK-------ILAKLPKNRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K   + P++  +   N   E +E+   V+ +G+K   +   I++     
Sbjct: 186 ATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKLIKDNDWKQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E    S A IHG  S   +   + +FK+G  ++L+AT +   
Sbjct: 246 VLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL-- 611
           G+D+     +I  +        +H++ GR GR       I       +K  +    ++  
Sbjct: 306 GLDIEQLPQVINVDLPKVPEDYVHRI-GRTGRAGATGKAISFVSEDEAKELFAIERLIQK 364

Query: 612 ---KNTEDGFL 619
              ++  +GF 
Sbjct: 365 VLPRHVLEGFE 375


>gi|311266965|ref|XP_003131337.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
           DDX42-like [Sus scrofa]
          Length = 941

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 85/466 (18%), Positives = 156/466 (33%), Gaps = 61/466 (13%)

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP--- 254
             P I  +   I  P   K+F       E      L   Q+  L  +   +     P   
Sbjct: 199 HLPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRP 251

Query: 255 ------INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
                    + ++  +I ++    PT  Q   +   L        M+ I     GSGKT 
Sbjct: 252 GSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTA 305

Query: 309 VALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
             +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G   
Sbjct: 306 AFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGS 365

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRL 412
              + KAL+      A I++ T     D ++           L+    D     G + ++
Sbjct: 366 MWEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQV 421

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           +                P  +TL+ ++     I K+  +     PI+ V   I   +E +
Sbjct: 422 RSIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDV 471

Query: 473 ERLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGR 524
            ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG 
Sbjct: 472 TQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGD 531

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M   ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR G
Sbjct: 532 MDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTG 590

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           R  E      L  P  S  +   +  L+           DL  +  
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 636


>gi|326204124|ref|ZP_08193984.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325985635|gb|EGD46471.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 564

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 153/418 (36%), Gaps = 49/418 (11%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
               Q  + ++ F   T  Q  +I  IL+          I Q   G+GKT    I     
Sbjct: 12  SDEVQHAIADMGFEEATPIQSQSIPYILEG------NDLIGQAQTGTGKTCAFGIPAVEK 65

Query: 318 VEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAH 373
           +++     Q +++ P   LA Q  E ++   +    I +  + G  P   +  AL++   
Sbjct: 66  IDSHIDSIQVLVLCPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQIMALKK--- 122

Query: 374 GQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
            +  IIIGT     D ++   L        +L   DE    G ++ +           +L
Sbjct: 123 -RPQIIIGTPGRVMDHMRRKTLKLESLKMIVLDEADEMLNMGFREDI---------DTIL 172

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
                  +T++ ++    +I ++T+K   + P+   I         IE+  + + E  K 
Sbjct: 173 EKVPEDRQTILFSATMPKEILELTKKY-QKDPVHIKIAHKELTVPSIEQYYLEVKESAKL 231

Query: 486 YWICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +   I+           N +  V+   +  +    S   +HG M    ++ VM  F+ 
Sbjct: 232 EVLSRLIDTNDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMSLFRK 291

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +LIAT V   GIDV D   +   +  +     +H++ GR GR              
Sbjct: 292 GNFDILIATDVAARGIDVDDVEAVFNYDLPNDEEYYVHRI-GRTGRAGRTGKAFTFISGR 350

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEE-----DLKQRKEGEILGIKQSGMPKFLIAQPELH 652
                       K+T    ++A +     +++++K   IL   +  +    I++   H
Sbjct: 351 EMYKLRDIQRYTKST----IVAMKPPSLNEVEEKKMLNILKTLKDNLKDDSISKFVSH 404


>gi|227894493|ref|ZP_04012298.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis
           DSM 16047]
 gi|227863652|gb|EEJ71073.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis
           DSM 16047]
          Length = 496

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 151/423 (35%), Gaps = 48/423 (11%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE  I   L           I Q   G+GKT    + +   ++      QA+
Sbjct: 20  GFEEATPIQEQTIPLALAGKDV------IGQAQTGTGKTAAFGLPILQTIDKKEKAIQAI 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E + +  ++ +  V+++ G      + ++L+   H    I++GT   
Sbjct: 74  IIEPTRELAIQTQEELFRLGRDERAHVQVVYGGADIGRQIRSLK---HHVPSILVGTPGR 130

Query: 386 FQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D ++           ++L   DE    G  Q +           +L  A    +TL+ 
Sbjct: 131 LLDHLKRGTIDLDKVKTVVLDEADEMLDMGFIQDI---------ESILKYAKNRKQTLLF 181

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I +I EK     P    I       ++I++  V   E +K   +C  I+ +  
Sbjct: 182 SATMPKPILRIGEKFMN-NPEIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGP 240

Query: 497 --ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L     +     A IHG +S   + +V+  F+ G   +L+AT V 
Sbjct: 241 DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMTVLKRFREGKLDILVATDVA 300

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+   + +   +      + +H++ GR GR  +    +    P       T   + 
Sbjct: 301 ARGLDISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGQNGISVTFVTPNEIGYMRTIEQLT 359

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           K          +D   R +   L   +S +   +      +        +DA  +L    
Sbjct: 360 KKKMSPLRPPTDDQALRGQ---LKQAKSEIEDLMNGDLGKYT-------QDASELLDNYS 409

Query: 672 DLT 674
            L 
Sbjct: 410 ALD 412


>gi|195432312|ref|XP_002064167.1| GK20023 [Drosophila willistoni]
 gi|194160252|gb|EDW75153.1| GK20023 [Drosophila willistoni]
          Length = 1234

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 151/377 (40%), Gaps = 42/377 (11%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K    +LR + F  PT  Q  AI  I+           I     GSGKTL  ++ M   
Sbjct: 537 SKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRD------LIGIAKTGSGKTLAFILPMFRH 590

Query: 318 VEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +    Q        A+IMAP   L  Q  + I++++++  +    + G    + +   L+
Sbjct: 591 ILDQPQLEDGDGAIAIIMAPTRELCMQIGKDIRRFSKSLGLCPVCVYGGTGISEQIAELK 650

Query: 370 RIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           R     A II+ T     D +           ++  +++DE  R                
Sbjct: 651 R----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVM----- 701

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             ++    P  +T++ ++     +  +  +   +KPI+ ++   + + + +E+  V+L++
Sbjct: 702 -RIIDNVRPDRQTVMFSATFPRQMEALARR-ILKKPIEVIVGGRSVVCKDVEQHAVILND 759

Query: 482 GKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534
             K + +   +   +E      F    E  + L      +      +HG +   D++S +
Sbjct: 760 DAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTI 819

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR  +  S   
Sbjct: 820 IDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHR-CGRTGRAGKKGSAYT 878

Query: 595 LYHPPLSKNSYTRLSVL 611
              P  S+ +   +  L
Sbjct: 879 FITPEQSRYAGDIVRAL 895


>gi|90075448|dbj|BAE87404.1| unnamed protein product [Macaca fascicularis]
          Length = 566

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 158/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVETY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 217 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 334 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 385

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 444

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 445 FTPNNIKQVSDLISVLREAN 464


>gi|195146268|ref|XP_002014109.1| GL24500 [Drosophila persimilis]
 gi|194103052|gb|EDW25095.1| GL24500 [Drosophila persimilis]
          Length = 799

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 77/414 (18%), Positives = 143/414 (34%), Gaps = 55/414 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ AI  I+           +     GSGKT   L+ +   +   G         
Sbjct: 312 KPTPVQKHAIPIIISGRD------LMACAQTGSGKTAAFLVPILNQMYEHGMSAPPQNNR 365

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                      +++AP   LA Q +E  KK+   +++   ++ G    + + + L+R   
Sbjct: 366 QYSRRKQYPSGLVLAPTHKLATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDR--- 422

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+I+ T    +D I   K+ L  +     DE  R          Q       L M  
Sbjct: 423 -GCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEP--QIRRIVEQLNMPP 479

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++     I ++         I   +  +    E I +  + + E  K  ++
Sbjct: 480 TGQRQTLMFSATFPKQIQELASDFL-SNYIFLAVGRVGSTSENITQTILWVYEQDKRSYL 538

Query: 489 CPQIEEKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              +   ++                +   +         +  +  IHG  +  ++E  + 
Sbjct: 539 LDLLSSIRDGPEYSKDSLTLIFVETKKGADSLEEFLYQCSHPVTSIHGDRTQKEREEALR 598

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G C +L+AT V   G+D+     +I  +        +H++ GR GR   +      
Sbjct: 599 CFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRI-GRTGRMGNLGVATSF 657

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDL--KQRKEGEILGIKQSGMPKFLIA 647
           ++          L +L  T+       EDL    R  G   G K+ G P     
Sbjct: 658 FNEKNRNICSDLLELLIETKQEIPNFLEDLLSSDRGHG---GAKRRGGPGARYG 708


>gi|156389356|ref|XP_001634957.1| predicted protein [Nematostella vectensis]
 gi|156222046|gb|EDO42894.1| predicted protein [Nematostella vectensis]
          Length = 794

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 96/439 (21%), Positives = 163/439 (37%), Gaps = 57/439 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            PT  Q  AI  I+        M+ I     GSGKTL  LI M   +        E G  
Sbjct: 159 KPTPIQAQAIPVIM----SGRDMIGI--AKTGSGKTLAFLIPMFRHIKDQPPLEREEGPI 212

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A++M P   LA Q +   KK+ +   +    + G    + +   L+R     A II+ T 
Sbjct: 213 AIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQIAELKR----GAEIIVCTP 268

Query: 384 ALFQDSIQYYK-----------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
               D +               L+L   D     G + ++                 P  
Sbjct: 269 GRMIDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEPQVMRIIDCIR---------PDR 319

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +T++ ++     +  +  K    KPI+  +   + +   +E+  VV+ E  K   +   +
Sbjct: 320 QTVMFSATFPRQMEALARKILD-KPIEIQVGGRSVVCSDVEQNVVVIEEDDKFLKLLELL 378

Query: 493 EEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              +E      F    +  +SL +           +HG M   D++S +  FKNG  KL+
Sbjct: 379 GLYQEQGSVLVFVEKQDSADSLFKDLLKRSYPCLSLHGGMDQFDRDSTIADFKNGVTKLM 438

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           IAT+V   G+DV   ++++  +  +     +H++ GR GR     +      P   + + 
Sbjct: 439 IATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRV-GRTGRAGNKGTAYTFLTPEQGRFAI 497

Query: 606 TRLSVLKNT-----EDGFLIAEEDLKQRKEGEILGIKQSGM--PKFLIAQPELHDSLLEI 658
             +  L+       ED   +A   ++ RK      +K SG     F     E     +  
Sbjct: 498 DVIKALEMAENPVPEDVRNLANTYIETRKAEGKNIVKNSGFSGKGFKFNDEEKAK--VSE 555

Query: 659 ARKDAKHILT-QDPDLTSV 676
           A+K  K  L  QD D  + 
Sbjct: 556 AKKIQKWALGLQDSDDEAE 574


>gi|317129136|ref|YP_004095418.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315474084|gb|ADU30687.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 528

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 99/462 (21%), Positives = 181/462 (39%), Gaps = 50/462 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
               +K ++++ F  P+  QE  I +IL+          I Q   G+GKT    I +   
Sbjct: 10  SNDIKKAIKDMGFEAPSPIQEKVIPEILKGHDV------IGQAQTGTGKTAAFGIPLLEK 63

Query: 318 VEAGGQA--VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           V +  Q   +I+ P   LA Q    ++K ++  +  +  I G     H+ KAL+R     
Sbjct: 64  VTSDRQVQSLILTPTRELAIQVAGELQKLSKFKRSQILPIYGGQSIGHQIKALKR----G 119

Query: 376 AHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLL 425
             +++GT     D +          + LIL   DE    G  + +   L Q  T    +L
Sbjct: 120 VQVVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNRQTML 179

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT  P  R L    + +     I++       I  V   +   +++    +V+ SE  
Sbjct: 180 FSATMPPPIRKLSNKYMNNPKQVTISKGEVTAPSINQVYFKVLEKNKLDSLCRVIDSETI 239

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               I  + +       + V E   +L      +  + HG ++   ++ VM  F++ + +
Sbjct: 240 DLGIIFCRTK-------KGVAELTEALQARGYMADGL-HGDLTQSQRDIVMKKFRDSSIE 291

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
            LIAT V   GIDV + S +I  +      + +H++ GR GR       + L  P   K+
Sbjct: 292 FLIATDVAARGIDVENVSHVINYDIPQDPESYVHRI-GRTGRAGREGVAVTLVTPREMKH 350

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS---GMPKFLIAQPELHDSLLEIAR 660
             +  + +K T     I  +  +     E++  +Q    G    LI   E    L +   
Sbjct: 351 LRSIEAEIKMT-----IPSQ--RIPSVEEVVEKQQHVWKGQIIDLIESEEDDAGLYDDLV 403

Query: 661 KDAKHILTQDPDLTSVRGQSIRILLYLYQ--YNEAFQFIRAG 700
            D   +L Q P    +    +++  Y ++   ++ + F   G
Sbjct: 404 SD---LLNQYPP-NKIVASLLKLAFYSHEDLNDDGYDFGDTG 441


>gi|71276350|ref|ZP_00652627.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Dixon]
 gi|71901364|ref|ZP_00683458.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|170729445|ref|YP_001774878.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
 gi|71162812|gb|EAO12537.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Dixon]
 gi|71728863|gb|EAO31000.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|167964238|gb|ACA11248.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
          Length = 609

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 133/369 (36%), Gaps = 35/369 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +P+  Q + I  +L           + Q   G+GKT    + +       +   Q +++A
Sbjct: 31  TPSPIQAATIPALLAGRDV------LGQAQTGTGKTAAFALPLLTRTVLNQVKPQVLVLA 84

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  ++Y    +   V  + G      +  AL+R      H+I+GT     
Sbjct: 85  PTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKR----GVHVIVGTPGRVI 140

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQR--LKLTQKATAPHVLLMTATPIPRT--L 435
           D ++           L+L   DE  R G  +     L +   +  V L +AT  P+   +
Sbjct: 141 DHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSATMPPQIRRI 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E   A  I  +    
Sbjct: 201 AQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDAMIIFVRT--- 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E      +    + A I+G M    +E  +   K+G   +L+AT V   G+
Sbjct: 258 -----KAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARGL 312

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P                 
Sbjct: 313 DVERISHVLNYDIPYDVESYVHRI-GRTGRAGRSGEAILFVTPREKGMLRQIERATHQPI 371

Query: 616 DGFLIAEED 624
           +   +   D
Sbjct: 372 EAMQLPSVD 380


>gi|319407348|emb|CBI80993.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C]
          Length = 501

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 142/364 (39%), Gaps = 47/364 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q   I  ILQ    K  +L I Q   G+GKT   ++ M   +E G       + +I
Sbjct: 61  PTPIQSRTIPYILQ----KKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARIPRTLI 114

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   KY  N  + V ++ G +   H+ + LER     A ++I T    
Sbjct: 115 LEPTRELAAQVKENFDKYGVNHNLNVALLIGGVSFEHQDRKLER----GADVLIATPGRL 170

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPR--T 434
            D  +  KL+LV V     DE  R      +   ++           L  +AT  P    
Sbjct: 171 LDHFERGKLLLVGVEILVIDEADRMLNMGFIPDVERICKVTPFTRQTLFFSATMAPEITQ 230

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVII-----PINRIDEVIERLKVVLSEGKKAYWIC 489
           L    L      +ITE  +  K I   ++     P ++   + E ++    E K A   C
Sbjct: 231 LTKQFLHSPVYIEITEASSTAKTITQRLVKSESKPCDKKAVLKELIQNEGDELKNAIIFC 290

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         + + E F  L +H   S+  +HG M    + + + SFKN    LLIA+ 
Sbjct: 291 NR--------KKDISELFQYLIKH-NFSVGTLHGDMDQHSRTNTLASFKNNKFILLIASD 341

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+   S +   +        +H++ GR GR +       +     +K     + 
Sbjct: 342 VAARGLDIPAVSHVFNYDVPTHAEDYIHRI-GRTGRAKRSGKAFTIV----TKADEKYIC 396

Query: 610 VLKN 613
            ++ 
Sbjct: 397 AIEE 400


>gi|49072840|gb|AAT51707.1| DEAD box RNA helicase [Choristoneura fumiferana]
          Length = 1012

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 78/410 (19%), Positives = 152/410 (37%), Gaps = 44/410 (10%)

Query: 229 AYDELLAGQIALLLMRKQFKKEIGI--PINVEGKIAQKILRNIPFS-PTKSQESAIKDIL 285
              E    ++  + ++ +   +           K    IL+ + F  PT  Q  AI  I+
Sbjct: 327 EEVEAYRTELEGIRVKGKGCPKPIRTWAHCGVSKKEMDILKKLNFEKPTPIQAQAIPAIM 386

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQH 337
                      I     GSGKTL  ++ M   V          G  ++IM P   L  Q 
Sbjct: 387 SGRD------LIGIAKTGSGKTLAFILPMFRHVLDQSPLEDTDGPISLIMTPTRELCMQI 440

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+K+ ++  + V  + G    + +   L+R     A II+ T     D +       
Sbjct: 441 GKDIRKFAKSLGLRVVCVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAANSGRV 496

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
               ++  +++DE  R           K            P  +T++ ++     +  + 
Sbjct: 497 TNLRRVSYIVLDEADRMFDMGFEPQVMKIIDNIR------PDRQTVMFSATFPRQMEALA 550

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----SNFRSVVE 505
            +   +KPI+  +   + + + +E+   +L +  K + +   +    +      F    E
Sbjct: 551 RR-ILQKPIEIQVGGRSVVCKDVEQHVAILEDDAKFFKLLELLGLYSQLGSIIVFVDKQE 609

Query: 506 RFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             +SL +       S   +HG +   D++S +  FKNG  KLL+AT+V   G+DV    +
Sbjct: 610 NADSLLKDLMKASYSCMSLHGGIDQFDRDSTIVDFKNGKVKLLVATSVAARGLDVKQLVL 669

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           ++  +  +     +H+  GR GR            P   + +   L  ++
Sbjct: 670 VVNYDCPNHYEDYVHR-CGRTGRAGNKGFAWTFLTPEQGRYAGDVLRAME 718


>gi|71898665|ref|ZP_00680835.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|71731612|gb|EAO33673.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
          Length = 609

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 133/369 (36%), Gaps = 35/369 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +P+  Q + I  +L           + Q   G+GKT    + +       +   Q +++A
Sbjct: 31  TPSPIQAATIPALLAGRDV------LGQAQTGTGKTAAFALPLLTRTVLNQVKPQVLVLA 84

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  ++Y    +   V  + G      +  AL+R      H+I+GT     
Sbjct: 85  PTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKR----GVHVIVGTPGRVI 140

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQR--LKLTQKATAPHVLLMTATPIPRT--L 435
           D ++           L+L   DE  R G  +     L +   +  V L +AT  P+   +
Sbjct: 141 DHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSATMPPQIRRI 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E   A  I  +    
Sbjct: 201 AQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDAMIIFVRT--- 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E      +    + A I+G M    +E  +   K+G   +L+AT V   G+
Sbjct: 258 -----KAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARGL 312

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P                 
Sbjct: 313 DVERISHVLNYDIPYDVESYVHRI-GRTGRAGRSGEAILFVTPREKGMLRQIERATHQPI 371

Query: 616 DGFLIAEED 624
           +   +   D
Sbjct: 372 EAMQLPSVD 380


>gi|327400905|ref|YP_004341744.1| DEAD/DEAH box helicase domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327316413|gb|AEA47029.1| DEAD/DEAH box helicase domain protein [Archaeoglobus veneficus
           SNP6]
          Length = 389

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/336 (19%), Positives = 126/336 (37%), Gaps = 31/336 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT+ Q  AI  + +          + Q + GSGKTL   I +  A E G   QA+++ P
Sbjct: 25  EPTEIQTKAIPLVEKGFDV------VAQSETGSGKTLAFAIPIIEAAETGKGIQALVLTP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q     ++++++  + +  I G +P   + + L R     A +++GT     D 
Sbjct: 79  TRELANQIENEFRRFSRHKGLRIANIHGGVPIEPQIRDLRR-----ADVVVGTPGRLLDH 133

Query: 390 IQ-----YYKLILVIVDEQHRFGVQQ-----RLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++     + ++   ++DE  R          +  +         LL +AT  P    L S
Sbjct: 134 VRRKTVDFSRVEYFVIDEADRMLDMGFIDDVKAIMRCTPKTRQSLLFSATIPPEVRALAS 193

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +   I  K      +           E    L  +L +      +          N
Sbjct: 194 RYMKNPKTIRTKELVDPKLLNQYYYDVDDSEKFSMLVHLLRKENPKKALVFT-------N 246

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   +             +++HG ++   ++ +M+ F+ G  ++L+AT V   G+DV  
Sbjct: 247 MRKTSDIVAKNLFMHGFKASVLHGGLTQSKRDRMMERFRKGEIRVLVATDVASRGLDVKG 306

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            + +   +        +H++ GR  R  +    + +
Sbjct: 307 VTHVFNYDVPSKAEDYIHRI-GRTARAGKNGKAVTI 341


>gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758804|gb|ACR18054.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 823

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 76/401 (18%), Positives = 155/401 (38%), Gaps = 47/401 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q + I      ++Q   ++ + Q   G+GKT    + + + ++      QA++++
Sbjct: 176 TPSPIQAATIPI----LAQGRDVVGLAQ--TGTGKTAAFALPILSRLDRSQKKPQALVLS 229

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  +++  +   + V  I G      +   L R     AHI++GT     
Sbjct: 230 PTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRR----GAHIVVGTPGRVI 285

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++           L+L   DE    G Q+ ++     T  H          +T + ++
Sbjct: 286 DHLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEH---------KQTALFSA 336

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I +++++     P +  I    R  + I +  ++++   K   +   +E  +   
Sbjct: 337 TMPASIRRLSKQYLE-DPREVTIKSQQRTADNIHQQYLLVNHHYKLDALTRILEVTEFDA 395

Query: 500 F------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   E           S A I+G M+   +E  +D  ++G   +L+AT V   
Sbjct: 396 MIMFARTKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAAR 455

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV   S ++  +  H   + +H++ GR GR       IL   P   +   +     K+
Sbjct: 456 GLDVERISHVVNYDIPHDTESYVHRI-GRTGRAGRSGEAILFVTPRERRLLRSIERATKS 514

Query: 614 TEDGFLIAEED--LKQRKEGEILGIKQSGMPKFLIAQPELH 652
           + +   +   D   + RK        QS      +A P++ 
Sbjct: 515 SIEEMQLPTVDEVNETRKA----KFAQS--ITESLADPQVD 549


>gi|28198133|ref|NP_778447.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
 gi|28056193|gb|AAO28096.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
          Length = 615

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 133/369 (36%), Gaps = 35/369 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +P+  Q + I  +L           + Q   G+GKT    + +       +   Q +++A
Sbjct: 37  TPSPIQAATIPALLAGRDV------LGQAQTGTGKTAAFALPLLTRTVLNQVKPQVLVLA 90

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  ++Y    +   V  + G      +  AL+R      H+I+GT     
Sbjct: 91  PTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKR----GVHVIVGTPGRVI 146

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQR--LKLTQKATAPHVLLMTATPIPRT--L 435
           D ++           L+L   DE  R G  +     L +   +  V L +AT  P+   +
Sbjct: 147 DHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSATMPPQIRRI 206

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E   A  I  +    
Sbjct: 207 AQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDAMIIFVRT--- 263

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E      +    + A I+G M    +E  +   K+G   +L+AT V   G+
Sbjct: 264 -----KAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARGL 318

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P                 
Sbjct: 319 DVERISHVLNYDIPYDVESYVHRI-GRTGRAGRSGEAILFVTPREKGMLRQIERATHQPI 377

Query: 616 DGFLIAEED 624
           +   +   D
Sbjct: 378 EAMQLPSVD 386


>gi|255524805|ref|ZP_05391755.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|296188658|ref|ZP_06857046.1| ATP-dependent RNA helicase DbpA [Clostridium carboxidivorans P7]
 gi|255511472|gb|EET87762.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|296046922|gb|EFG86368.1| ATP-dependent RNA helicase DbpA [Clostridium carboxidivorans P7]
          Length = 480

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 81/358 (22%), Positives = 137/358 (38%), Gaps = 38/358 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+K Q+  I  ILQ          I++   GSGKT    I +   +E      QA+I+ 
Sbjct: 26  KPSKVQQQVIPLILQGKDV------IVKSQTGSGKTAAFAIPICEHMEIEENDAQALILT 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I    +  +I    I G  P   ++K L++    + HII+GT     D
Sbjct: 80  PTRELAVQIKEDISNIGRFKRIRCSAIFGKQPMDTQKKELKQ----RVHIIVGTPGRTLD 135

Query: 389 SIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+           LIL   DE    G  + +    +               + ++ ++ 
Sbjct: 136 HIKRGNMNLQNIKFLILDEADEMLNMGFIEEVSEIIENIPV---------SRQNMLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI------EE 494
               I  +++K   + P K  I P     + IE+   ++ E  K   +   +        
Sbjct: 187 MPEAIENLSKKYM-KNPAKVEITPEKLTVDNIEQKCYIIEENNKFSLLRNLLYIENPDTA 245

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 ++ V+   S  +    S   IHG M   ++   M+SFK G  + LIAT V   G
Sbjct: 246 IVFCRTKNNVDYVTSRMKAEKYSCDKIHGGMLQNERLDTMNSFKMGEFRFLIATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           ID+ + + +I  +      + +H++ GR GR     + I    P   +        ++
Sbjct: 306 IDIDNVTHVINYDLPMEKESYIHRI-GRTGRAGNKGTAITFSTPNEDRFLSEIEDYIQ 362


>gi|73969105|ref|XP_860607.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 10 [Canis
           familiaris]
          Length = 655

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 158/453 (34%), Gaps = 63/453 (13%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 39  RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 93

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 147

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 148 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 207

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ------ 409
           + + LER       I I T     D ++  K        L+L   D     G +      
Sbjct: 208 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 263

Query: 410 -QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVI 462
             ++++ +       L+ +AT       L      D ++I     E  A      I  V 
Sbjct: 264 VDQIRVCKTDDTLQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVC 323

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
           +   +  ++I+ ++ +++E +    I            +   +               IH
Sbjct: 324 MESEKDHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIH 375

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G  S  +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR
Sbjct: 376 GDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GR 434

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
             R     +    + P   K +   + VL+   
Sbjct: 435 TARSTNKGTAYTFFTPGNLKQARELIKVLEEAN 467


>gi|226315242|ref|YP_002775138.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226098192|dbj|BAH46634.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 575

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 140/374 (37%), Gaps = 34/374 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            PT  QE AI  +L+          I Q   G+GKTL  ++ +    +      QA+I+ 
Sbjct: 27  EPTPIQEKAIPVVLEGKDV------IAQAQTGTGKTLAFVLPILENADPQATHVQALILT 80

Query: 329 PIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q   E  K   +   I V  + G      + + L     G+ H++I T     
Sbjct: 81  PTRELALQITAEVKKLTEKLEDIQVLAVYGGQDVNQQLRKL----KGKIHVVIATPGRLL 136

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTSLGDIDIS 446
           D ++   + L  V         Q L +        +  M  TP   +TL+ ++     + 
Sbjct: 137 DHLRRGTIDLSQVSMFVLDEADQMLHMGFLPEVEDI--MANTPFEKQTLLFSATMSEQVQ 194

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNF 500
            + ++   +     V      +D++ +         K+A  +C  ++E++          
Sbjct: 195 ALAKRFMQKPENIKVQGKRITLDDIRQIAVETTDRAKQA-TLCSLLDEQRPFLAVIFCRT 253

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           +    + N+  +        +HG +S   +E VM  F+    + L+AT V   G+DV   
Sbjct: 254 KRRASKLNAELQGLDYMSDELHGDLSQAKREDVMKRFREARIQYLVATDVAARGLDVEGV 313

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           + +   +      + +H++ GR GR +E  +   L               L+  E G  +
Sbjct: 314 THVFNYDIPEDVDSYIHRI-GRTGRAKEKGTAFTLVTAKDWGQ-------LREIEQGINL 365

Query: 621 AEEDLKQ-RK-EGE 632
           + E  +  R   G+
Sbjct: 366 SLERREMDRGEPGD 379


>gi|229159401|ref|ZP_04287421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
 gi|228624068|gb|EEK80874.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
          Length = 528

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 159/433 (36%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTNKEAV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G  ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMP-KFLIAQPELHDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +    L     + + +LE          A
Sbjct: 359 TKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|15836857|ref|NP_297545.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
 gi|9105065|gb|AAF83065.1|AE003878_13 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
          Length = 614

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 133/369 (36%), Gaps = 35/369 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +P+  Q + I  +L           + Q   G+GKT    + +       +   Q +++A
Sbjct: 37  TPSPIQAATIPALLAGRDV------LGQAQTGTGKTAAFALPLLTRTVLNQVKPQVLVLA 90

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  ++Y    +   V  + G      +  AL+R      H+I+GT     
Sbjct: 91  PTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKR----GVHVIVGTPGRVI 146

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQR--LKLTQKATAPHVLLMTATPIPRT--L 435
           D ++           L+L   DE  R G  +     L +   +  V L +AT  P+   +
Sbjct: 147 DHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSATMPPQIRRI 206

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E   A  I  +    
Sbjct: 207 AQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDAMIIFVRT--- 263

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E      +    + A I+G M    +E  +   K+G   +L+AT V   G+
Sbjct: 264 -----KAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARGL 318

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P                 
Sbjct: 319 DVERISHVLNYDIPYDVESYVHRI-GRTGRAGRSGEAILFVTPREKGMLRQIERATHQPI 377

Query: 616 DGFLIAEED 624
           +   +   D
Sbjct: 378 EAMQLPSVD 386


>gi|30018496|ref|NP_830127.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|29894036|gb|AAP07328.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
          Length = 514

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 86/431 (19%), Positives = 160/431 (37%), Gaps = 42/431 (9%)

Query: 269 IPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QA 324
           + F   T  Q   I   LQ          I Q   G+GKT    + +   V+      Q 
Sbjct: 1   MGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTHKESVQG 54

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT  
Sbjct: 55  IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGTPG 110

Query: 385 LFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PIP- 432
              D I    L        +L   DE    G  + +   LT        LL +AT P P 
Sbjct: 111 RILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPI 170

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R +    + +    K+  K      I+   + +    +     +++  +  +   +  + 
Sbjct: 171 RRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRT 230

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  V+  +        +   IHG ++   + SV+  FK G+ ++L+AT V  
Sbjct: 231 --------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAA 282

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+   + +   +      + +H++ GR GR  +    +L   P  S          K
Sbjct: 283 RGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 341

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIK-QSGMPKFLIAQPEL-HDSLLEI-----ARKDAKH 665
              D       D     +  ++  K QS +    +A  +   + +LE          A  
Sbjct: 342 RKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVTVVAAALK 401

Query: 666 ILTQDPDLTSV 676
           ++T++PD T +
Sbjct: 402 MMTKEPDTTPI 412


>gi|182680762|ref|YP_001828922.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa M23]
 gi|182630872|gb|ACB91648.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
 gi|307579229|gb|ADN63198.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 609

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 133/369 (36%), Gaps = 35/369 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +P+  Q + I  +L           + Q   G+GKT    + +       +   Q +++A
Sbjct: 31  TPSPIQAATIPALLAGRDV------LGQAQTGTGKTAAFALPLLTRTVLNQVKPQVLVLA 84

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  ++Y    +   V  + G      +  AL+R      H+I+GT     
Sbjct: 85  PTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKR----GVHVIVGTPGRVI 140

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQR--LKLTQKATAPHVLLMTATPIPRT--L 435
           D ++           L+L   DE  R G  +     L +   +  V L +AT  P+   +
Sbjct: 141 DHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSATMPPQIRRI 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E   A  I  +    
Sbjct: 201 AQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDAMIIFVRT--- 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E      +    + A I+G M    +E  +   K+G   +L+AT V   G+
Sbjct: 258 -----KAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARGL 312

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P                 
Sbjct: 313 DVERISHVLNYDIPYDVESYVHRI-GRTGRAGRSGEAILFVTPREKGMLRQIERATHQPI 371

Query: 616 DGFLIAEED 624
           +   +   D
Sbjct: 372 EAMQLPSVD 380


>gi|326491449|dbj|BAJ94202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 674

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 83/398 (20%), Positives = 146/398 (36%), Gaps = 45/398 (11%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA-- 313
           +V     Q      P SPT  Q  +    L +         +     GSGKTL  L+   
Sbjct: 19  SVRFPFFQIQRAGFP-SPTPIQAQSWPIALLNQDV------VAIAKTGSGKTLGYLLPGF 71

Query: 314 -----MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
                M  +  +G   +++AP   LA Q  E   K+ ++++I    + G  P+  + + L
Sbjct: 72  MHIKRMQNSTRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDL 131

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKA 418
           ER       +++ T     D ++  K        L+L   D     G   Q R  +    
Sbjct: 132 ER----GVDVVVATPGRLNDILEMRKISLKQVSYLVLDEADRMLDMGFEPQIRKIVRDIP 187

Query: 419 TAPHVLLMTATPIPRTL-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVI 472
           +    L+ TAT           +L     + I  + E  A +   + V +I  +     +
Sbjct: 188 SGRQTLMYTATWPKEVRRIADELLVHPVQVTIGSVDELVANKAITQHVEVITPSEKLRRL 247

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           E++      G K    C           R   +   +L+  F +  A IHG  S  ++E 
Sbjct: 248 EQILRSHDSGSKILIFCTT--------KRMCDQLSRTLNRQFGA--AAIHGDKSQNEREK 297

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           V+  F++G   +L+AT V   G+D+ D  ++I  +        +H++ GR GR       
Sbjct: 298 VLSQFRSGRAPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRI-GRTGRAGATGLA 356

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
                   SK +   + +L+  +        D+  R  
Sbjct: 357 YTFLCDQDSKYASDLIKILEGADQDVPPELLDMVSRGG 394


>gi|195452372|ref|XP_002073325.1| GK14071 [Drosophila willistoni]
 gi|194169410|gb|EDW84311.1| GK14071 [Drosophila willistoni]
          Length = 802

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 70/390 (17%), Positives = 135/390 (34%), Gaps = 50/390 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ AI  I+           +     GSGKT   L+ +   +   G         
Sbjct: 318 KPTPVQKYAIPIIISGRD------LMACAQTGSGKTAAFLLPILNQMYEHGISSPPQSNR 371

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                      +++AP   LA Q +E  KK+   +++   ++ G    + + + L+R   
Sbjct: 372 QYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDR--- 428

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+I+ T    +D I   K+ L  +     DE  R          Q       L M  
Sbjct: 429 -GCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEP--QIRRIVEQLNMPP 485

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++     I ++         I   +  +    E I +  + + E  K  ++
Sbjct: 486 TGQRQTLMFSATFPKQIQELASDFL-SNYIFLAVGRVGSTSENITQTILWVYEQDKRSYL 544

Query: 489 CPQIEEKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              +   ++                +   +            +  IHG  +  ++E  + 
Sbjct: 545 LDLLSSIRDGPEYCKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALR 604

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G C +L+AT V   G+D+     +I  +        +H++ GR GR   +      
Sbjct: 605 CFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRI-GRTGRMGNLGVATSF 663

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           ++          L +L  T+       ED+
Sbjct: 664 FNEKNRNICSDLLELLIETKQEIPNFLEDM 693


>gi|195356214|ref|XP_002044575.1| GM20179 [Drosophila sechellia]
 gi|194132206|gb|EDW53828.1| GM20179 [Drosophila sechellia]
          Length = 1214

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 152/377 (40%), Gaps = 42/377 (11%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K   ++LR + F  PT  Q  AI  I+           I     GSGKTL  ++ M   
Sbjct: 509 SKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRD------LIGIAKTGSGKTLAFILPMFRH 562

Query: 318 VEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +          G  A+IMAP   L  Q  + I+K++++  +    + G    + +   L+
Sbjct: 563 ILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELK 622

Query: 370 RIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           R     A II+ T     D +           ++  V++DE  R                
Sbjct: 623 R----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVM----- 673

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             ++    P  +T++ ++     +  +  +   +KPI+ ++   + + + +E+  V+L++
Sbjct: 674 -RIIDNVRPDRQTVMFSATFPRQMEALARR-ILKKPIEVIVGGRSVVCKDVEQNVVILND 731

Query: 482 GKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534
             K + +   +   +E      F    E  + L      +      +HG +   D++S +
Sbjct: 732 DAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTI 791

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR  +  S   
Sbjct: 792 IDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHR-CGRTGRAGKKGSAYT 850

Query: 595 LYHPPLSKNSYTRLSVL 611
              P  S+ +   +  +
Sbjct: 851 FITPEQSRYAGDIIRAM 867


>gi|73965233|ref|XP_861802.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 12 [Canis
           familiaris]
          Length = 486

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 94/458 (20%), Positives = 163/458 (35%), Gaps = 64/458 (13%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVETY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 217 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 334 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 385

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 444

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDL-KQRKEGE 632
           + P   K     +SVL+            L + R  G+
Sbjct: 445 FTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGSGK 482


>gi|118590800|ref|ZP_01548201.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
 gi|118436776|gb|EAV43416.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
          Length = 436

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 132/354 (37%), Gaps = 27/354 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA--------AAVEAGGQ 323
           +PT  Q+ AI  IL+       ++ + Q   G+GKT    + +          AV  G +
Sbjct: 24  TPTPIQQKAIPLILEG----RDLMGLAQ--TGTGKTAAFGLPLIDRLQAEKKKAVPKGTR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   L  Q  + +  + ++T + V  + G +    + K L +       I++ T 
Sbjct: 78  ALILAPTRELVNQIAKNLISFLKHTPLRVSSVVGGVSINGQIKRLSK----GTDILVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    + L            Q L L        +  + A    +TL+ ++    
Sbjct: 134 GRLLDLVDREAIDLRTASYLVLDEADQMLDLGFIHALRRIAGLVA-DKRQTLLFSATMPK 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------ 497
            I+++ +    R P +  + P  +  + + +    + +  K  ++  Q+ +K +      
Sbjct: 193 QINELAQSYL-RNPERVEVAPAGKTADKVTQSVHFMDKNSKGDFLVDQLRDKPDGLSLVF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ER      H   S   IHG  S   ++  +   + GT  +L+AT V   GID+
Sbjct: 252 CRTKHGAERLMRKLSHSGISAGSIHGNKSQNQRDRAIKELREGTINVLVATDVAARGIDI 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              S +          A +H++ GR  R       I L  P           ++
Sbjct: 312 PGVSHVYNFELPEVAEAYVHRI-GRTARAGAEGEAIALCAPEEIGLFRQIEKLI 364


>gi|325920710|ref|ZP_08182616.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
 gi|325548762|gb|EGD19710.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
          Length = 643

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 93/450 (20%), Positives = 166/450 (36%), Gaps = 45/450 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q + I  +L           + Q   G+GKT    + + +  +      QA+++A
Sbjct: 31  SPSPIQAATIPALLAGRDV------LGQAQTGTGKTAAFALPVLSNADLNQLKPQALVLA 84

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY +      V  + G  P A +  AL+R      H+++GT     
Sbjct: 85  PTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR----GVHVVVGTPGRVI 140

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP--RTL 435
           D +        Q   L+L   DE  R G    ++  L +      V L +AT  P  R +
Sbjct: 141 DHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPPAIRRI 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E      I  +    
Sbjct: 201 AQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFART--- 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E      +    + A I+G M    +E  +   K+G   +L+AT V   G+
Sbjct: 258 -----KAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGL 312

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P       +     +   
Sbjct: 313 DVERVSHVLNYDIPYDTESYVHRI-GRTGRAGRTGDAILFVTPREKGMLRSIERATRQPI 371

Query: 616 DGFLIAEED--LKQRKEG------EILGIKQSGMPKFLIAQPELHDSL--LEIARKDAKH 665
           +   +   D     R         E L   Q  M + L+ + E  +++  ++IA   AK 
Sbjct: 372 EEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVPAIDIAAAMAKL 431

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           +    P L +   +  R      +   A +
Sbjct: 432 LQGDSPFLLTPPVRGAREEFAPQRNERADR 461


>gi|260434308|ref|ZP_05788278.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
 gi|260412182|gb|EEX05478.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
          Length = 607

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 136/343 (39%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q++A  +++           + Q   G+GKT    + +   +E+G    QA+++A
Sbjct: 79  EPSPIQKAAFPELMLGRD------LVGQAQTGTGKTAAFALPLLERLESGQKTPQALVLA 132

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  K Y+  +  + V  + G      +  AL R       +++GT     
Sbjct: 133 PTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRR----GVDVVVGTPGRVM 188

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP--RTL 435
           D ++           L+L   DE  R G    ++    Q      V+L +AT  P  R L
Sbjct: 189 DHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVVLFSATMPPEIRRL 248

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D     I  K    K I+   I +    ++    +V+ + G +   I  +    
Sbjct: 249 SKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLDACGGEGVIIFART--- 305

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +++        E     +A+++G +    +E  ++  ++G+  +L+AT V   G+
Sbjct: 306 -----KAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGL 360

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV    ++I  +      A +H++ GR GR       +L   P
Sbjct: 361 DVERIGLVINYDMPFDSEAYVHRI-GRTGRAGRTGEAVLFVTP 402


>gi|225579844|gb|ACN94118.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 161/413 (38%), Gaps = 44/413 (10%)

Query: 225 RERLAYDELLAGQIALLLMRKQF--KKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAI 281
           R   A  E     +  + ++ +   K           K   ++LR + F  PT  Q  AI
Sbjct: 482 RMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAI 541

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGIL 333
             I+           I     GSGKTL  ++ M   +          G  A+IMAP   L
Sbjct: 542 PAIMSGRD------LIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAIIMAPTREL 595

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--- 390
             Q  + I+K++++  +    + G    + +   L+R     A II+ T     D +   
Sbjct: 596 CMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAAN 651

Query: 391 -----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
                   ++  V++DE  R                  ++    P  +T++ ++     +
Sbjct: 652 SGRVTNLRRVTYVVLDEADRMFDMGFEPQVM------RIIDNVRPDRQTVMFSATFPRQM 705

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----SNFR 501
             +  +   +KPI+ ++   + + + +E+  V+L++  K + +   +   +E      F 
Sbjct: 706 EALARR-ILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSIIVFV 764

Query: 502 SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
              E  + L      +      +HG +   D++S +  FK+G  +LLIAT+V   G+DV 
Sbjct: 765 DKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVK 824

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           D  +++  +  +     +H+  GR GR  +  S      P  S+ +   +  +
Sbjct: 825 DLILVVNYDVPNHYEDYVHR-CGRTGRAGKKGSAYTFITPEQSRYAGDIIRAM 876


>gi|78213173|ref|YP_381952.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
 gi|78197632|gb|ABB35397.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
          Length = 607

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 136/343 (39%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q++A  +++           + Q   G+GKT    + +   +E+G    QA+++A
Sbjct: 79  EPSPIQKAAFPELMLGRD------LVGQAQTGTGKTAAFALPLLERLESGQKTPQALVLA 132

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  K Y+  +  + V  + G      +  AL R       +++GT     
Sbjct: 133 PTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRR----GVDVVVGTPGRVM 188

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP--RTL 435
           D ++           L+L   DE  R G    ++    Q      V+L +AT  P  R L
Sbjct: 189 DHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVVLFSATMPPEIRRL 248

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D     I  K    K I+   I +    ++    +V+ + G +   I  +    
Sbjct: 249 SKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLDACGSEGVIIFART--- 305

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +++        E     +A+++G +    +E  ++  ++G+  +L+AT V   G+
Sbjct: 306 -----KAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGL 360

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV    ++I  +      A +H++ GR GR       +L   P
Sbjct: 361 DVERIGLVINYDMPFDSEAYVHRI-GRTGRAGRTGEAVLFVTP 402


>gi|225579817|gb|ACN94094.1| unknown [Drosophila melanogaster]
          Length = 1227

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 161/413 (38%), Gaps = 44/413 (10%)

Query: 225 RERLAYDELLAGQIALLLMRKQF--KKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAI 281
           R   A  E     +  + ++ +   K           K   ++LR + F  PT  Q  AI
Sbjct: 485 RMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAI 544

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGIL 333
             I+           I     GSGKTL  ++ M   +          G  A+IMAP   L
Sbjct: 545 PAIMSGRD------LIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAIIMAPTREL 598

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--- 390
             Q  + I+K++++  +    + G    + +   L+R     A II+ T     D +   
Sbjct: 599 CMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAAN 654

Query: 391 -----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
                   ++  V++DE  R                  ++    P  +T++ ++     +
Sbjct: 655 SGRVTNLRRVTYVVLDEADRMFDMGFEPQVM------RIIDNVRPDRQTVMFSATFPRQM 708

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----SNFR 501
             +  +   +KPI+ ++   + + + +E+  V+L++  K + +   +   +E      F 
Sbjct: 709 EALARR-ILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSIIVFV 767

Query: 502 SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
              E  + L      +      +HG +   D++S +  FK+G  +LLIAT+V   G+DV 
Sbjct: 768 DKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVK 827

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           D  +++  +  +     +H+  GR GR  +  S      P  S+ +   +  +
Sbjct: 828 DLILVVNYDVPNHYEDYVHR-CGRTGRAGKKGSAYTFITPEQSRYAGDIIRAM 879


>gi|225579772|gb|ACN94054.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 161/413 (38%), Gaps = 44/413 (10%)

Query: 225 RERLAYDELLAGQIALLLMRKQF--KKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAI 281
           R   A  E     +  + ++ +   K           K   ++LR + F  PT  Q  AI
Sbjct: 482 RMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAI 541

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGIL 333
             I+           I     GSGKTL  ++ M   +          G  A+IMAP   L
Sbjct: 542 PAIMSGRD------LIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAIIMAPTREL 595

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--- 390
             Q  + I+K++++  +    + G    + +   L+R     A II+ T     D +   
Sbjct: 596 CMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAAN 651

Query: 391 -----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
                   ++  V++DE  R                  ++    P  +T++ ++     +
Sbjct: 652 SGRVTNLRRVTYVVLDEADRMFDMGFEPQVM------RIIDNVRPDRQTVMFSATFPRQM 705

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----SNFR 501
             +  +   +KPI+ ++   + + + +E+  V+L++  K + +   +   +E      F 
Sbjct: 706 EALARR-ILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSIIVFV 764

Query: 502 SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
              E  + L      +      +HG +   D++S +  FK+G  +LLIAT+V   G+DV 
Sbjct: 765 DKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVK 824

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           D  +++  +  +     +H+  GR GR  +  S      P  S+ +   +  +
Sbjct: 825 DLILVVNYDVPNHYEDYVHR-CGRTGRAGKKGSAYTFITPEQSRYAGDIIRAM 876


>gi|225579763|gb|ACN94046.1| unknown [Drosophila melanogaster]
 gi|225579781|gb|ACN94062.1| unknown [Drosophila melanogaster]
 gi|225579826|gb|ACN94102.1| unknown [Drosophila melanogaster]
 gi|225579835|gb|ACN94110.1| unknown [Drosophila melanogaster]
 gi|225579853|gb|ACN94126.1| unknown [Drosophila melanogaster]
 gi|225579862|gb|ACN94134.1| unknown [Drosophila melanogaster]
 gi|225579889|gb|ACN94158.1| unknown [Drosophila melanogaster]
 gi|225579898|gb|ACN94166.1| unknown [Drosophila melanogaster]
 gi|225579916|gb|ACN94182.1| unknown [Drosophila melanogaster]
 gi|225579934|gb|ACN94198.1| unknown [Drosophila melanogaster]
 gi|225579952|gb|ACN94214.1| unknown [Drosophila melanogaster]
 gi|225579961|gb|ACN94222.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 161/413 (38%), Gaps = 44/413 (10%)

Query: 225 RERLAYDELLAGQIALLLMRKQF--KKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAI 281
           R   A  E     +  + ++ +   K           K   ++LR + F  PT  Q  AI
Sbjct: 482 RMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAI 541

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGIL 333
             I+           I     GSGKTL  ++ M   +          G  A+IMAP   L
Sbjct: 542 PAIMSGRD------LIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAIIMAPTREL 595

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--- 390
             Q  + I+K++++  +    + G    + +   L+R     A II+ T     D +   
Sbjct: 596 CMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAAN 651

Query: 391 -----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
                   ++  V++DE  R                  ++    P  +T++ ++     +
Sbjct: 652 SGRVTNLRRVTYVVLDEADRMFDMGFEPQVM------RIIDNVRPDRQTVMFSATFPRQM 705

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----SNFR 501
             +  +   +KPI+ ++   + + + +E+  V+L++  K + +   +   +E      F 
Sbjct: 706 EALARR-ILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSIIVFV 764

Query: 502 SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
              E  + L      +      +HG +   D++S +  FK+G  +LLIAT+V   G+DV 
Sbjct: 765 DKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVK 824

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           D  +++  +  +     +H+  GR GR  +  S      P  S+ +   +  +
Sbjct: 825 DLILVVNYDVPNHYEDYVHR-CGRTGRAGKKGSAYTFITPEQSRYAGDIIRAM 876


>gi|166711384|ref|ZP_02242591.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 634

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 92/450 (20%), Positives = 161/450 (35%), Gaps = 45/450 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q + I  +L           + Q   G+GKT    + + +  +      QA+++A
Sbjct: 31  SPSPIQAATIPALLAGRDV------LGQAQTGTGKTAAFALPVLSNADLNQVKPQALVLA 84

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY +      V  + G  P A +  AL+R      H+++GT     
Sbjct: 85  PTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR----GVHVVVGTPGRVI 140

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP--RTL 435
           D +        Q   L+L   DE  R G    ++  L +      V L +AT  P  R +
Sbjct: 141 DHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPPAIRRI 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     +N + ++    +++  E      I  + +  
Sbjct: 201 AQTYLKDPVEVTIAAKTTTSASIRQRYWWVNGLHKLDALTRILEVEPFDGMIIFARTKAA 260

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E       E    L     ++ AI +G M    +E  +   K+G   +L+AT V   G+
Sbjct: 261 TE-------ELAQKLQARGMAAAAI-NGDMQQAAREKTIAQLKDGKLDILVATDVAARGL 312

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P       +     +   
Sbjct: 313 DVERISHVLNYDIPYDTESYVHRI-GRTGRAGRTGDAILFVTPREKGMLRSIERATRQPI 371

Query: 616 DGFLIAEED-----LKQRKEGEILGIKQSGMPKFLIAQPELHDS-----LLEIARKDAKH 665
           +   +   D        R    I      G         + +++      ++IA   AK 
Sbjct: 372 EEMQLPSVDAVNDTRVARFMTRITETLAGGQIDMYRDLLQRYEAENNVPAIDIAAAMAKL 431

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           +    P L +   +  R      + +E   
Sbjct: 432 LQGDAPFLLTPPVRGAREDAAPRERHERAD 461


>gi|148702332|gb|EDL34279.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Mus
           musculus]
          Length = 927

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 86/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 198 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 250

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 251 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 304

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 305 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 364

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 365 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 420

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 421 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 470

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   S  +    ++ ++HG M
Sbjct: 471 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELASNLKQEGHNLGLLHGDM 530

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 531 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 589

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 590 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 634


>gi|148702333|gb|EDL34280.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Mus
           musculus]
          Length = 1012

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 86/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 283 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 335

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 336 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 389

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 390 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 449

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 450 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 505

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 506 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 555

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   S  +    ++ ++HG M
Sbjct: 556 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELASNLKQEGHNLGLLHGDM 615

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 616 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 674

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 675 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 719


>gi|133777033|gb|AAH43036.4| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus]
          Length = 810

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 86/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 81  LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 133

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 134 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 187

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 188 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 247

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 248 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 303

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 304 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 353

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   S  +    ++ ++HG M
Sbjct: 354 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELASNLKQEGHNLGLLHGDM 413

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 414 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 472

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 473 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 517


>gi|157838001|ref|NP_082350.3| ATP-dependent RNA helicase DDX42 [Mus musculus]
 gi|123796460|sp|Q810A7|DDX42_MOUSE RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|74146847|dbj|BAE41388.1| unnamed protein product [Mus musculus]
 gi|123242261|emb|CAM23778.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus]
          Length = 929

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 86/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 200 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 252

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 306

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 367 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 423 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 472

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   S  +    ++ ++HG M
Sbjct: 473 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELASNLKQEGHNLGLLHGDM 532

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 533 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 591

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 636


>gi|86570094|ref|NP_001033411.1| hypothetical protein F53H1.1 [Caenorhabditis elegans]
 gi|14574201|gb|AAK68386.1|AF045641_1 Hypothetical protein F53H1.1 [Caenorhabditis elegans]
          Length = 970

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 78/390 (20%), Positives = 145/390 (37%), Gaps = 45/390 (11%)

Query: 262 AQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
              +L+   +S PT  Q  AI  I+           I     GSGKTL  L+ M   +  
Sbjct: 315 MMNVLKKFEYSKPTSIQAQAIPSIMSGRDV------IGIAKTGSGKTLAFLLPMFRHILD 368

Query: 321 --------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                   G  AVI+AP   LA Q Y+   K+ +   + V    G +  + +   L+R  
Sbjct: 369 QPELEEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKR-- 426

Query: 373 HGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
              A I++ T     D +           ++  +++DE  R   +       K       
Sbjct: 427 --GAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIR- 483

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                P  +T++ ++     +  +  K    KP++ ++   + +   I +  V+ +E +K
Sbjct: 484 -----PDKQTVLFSATFPRHMEALARKVLD-KPVEILVGGKSVVCSDITQNAVICAEHQK 537

Query: 485 AYWICPQIEEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              +   +    E               +  + L     +S+A +HG +   D++S +  
Sbjct: 538 FLKLLELLGMYYEEGSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIAD 597

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G  K+L+AT+V   G+DV +  +++  +  +     +H++ GR GR           
Sbjct: 598 FKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRV-GRTGRAGRKGYAYTFV 656

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
            P           + +  E        DLK
Sbjct: 657 LPE--HQEKMAGEICRAFETAGCKPPADLK 684


>gi|26340024|dbj|BAC33675.1| unnamed protein product [Mus musculus]
          Length = 810

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 86/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 81  LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 133

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 134 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 187

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 188 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 247

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 248 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 303

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 304 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 353

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   S  +    ++ ++HG M
Sbjct: 354 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELASNLKQEGHNLGLLHGDM 413

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 414 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 472

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 473 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 517


>gi|24642151|ref|NP_573020.2| CG6227 [Drosophila melanogaster]
 gi|7293060|gb|AAF48446.1| CG6227 [Drosophila melanogaster]
 gi|54650792|gb|AAV36975.1| LD41277p [Drosophila melanogaster]
 gi|220951960|gb|ACL88523.1| CG6227-PA [synthetic construct]
 gi|225579871|gb|ACN94142.1| unknown [Drosophila melanogaster]
 gi|225579880|gb|ACN94150.1| unknown [Drosophila melanogaster]
 gi|225579907|gb|ACN94174.1| unknown [Drosophila melanogaster]
 gi|225579925|gb|ACN94190.1| unknown [Drosophila melanogaster]
 gi|225579943|gb|ACN94206.1| unknown [Drosophila melanogaster]
 gi|225579970|gb|ACN94230.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 161/413 (38%), Gaps = 44/413 (10%)

Query: 225 RERLAYDELLAGQIALLLMRKQF--KKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAI 281
           R   A  E     +  + ++ +   K           K   ++LR + F  PT  Q  AI
Sbjct: 482 RMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAI 541

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGIL 333
             I+           I     GSGKTL  ++ M   +          G  A+IMAP   L
Sbjct: 542 PAIMSGRD------LIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAIIMAPTREL 595

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--- 390
             Q  + I+K++++  +    + G    + +   L+R     A II+ T     D +   
Sbjct: 596 CMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAAN 651

Query: 391 -----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
                   ++  V++DE  R                  ++    P  +T++ ++     +
Sbjct: 652 SGRVTNLRRVTYVVLDEADRMFDMGFEPQVM------RIIDNVRPDRQTVMFSATFPRQM 705

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----SNFR 501
             +  +   +KPI+ ++   + + + +E+  V+L++  K + +   +   +E      F 
Sbjct: 706 EALARR-ILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSIIVFV 764

Query: 502 SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
              E  + L      +      +HG +   D++S +  FK+G  +LLIAT+V   G+DV 
Sbjct: 765 DKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVK 824

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           D  +++  +  +     +H+  GR GR  +  S      P  S+ +   +  +
Sbjct: 825 DLILVVNYDVPNHYEDYVHR-CGRTGRAGKKGSAYTFITPEQSRYAGDIIRAM 876


>gi|225442260|ref|XP_002279117.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743075|emb|CBI35942.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 144/373 (38%), Gaps = 41/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L+          I   + GSGKTL  L+     V A        G  
Sbjct: 122 EPTPIQAQGWPMALKGRDV------IGIAETGSGKTLAYLLPAIIHVNAQPILAPGDGPI 175

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +   K+  +++I    I G +P+  + + L++       I+I T 
Sbjct: 176 VLVLAPTRELAVQIQQEAAKFGASSRIKNTCIHGGVPKGPQIRDLQK----GVEIVIATP 231

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       ++  +++DE  R          +K  +         P  +TL  +
Sbjct: 232 GRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR------PDRQTLYWS 285

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +    ++ ++  K     P K VI   + + +  I +   ++SE +K   +   +E+  +
Sbjct: 286 ATWPKEVEQLARKFL-YNPCKVVIGSADLKANHAIRQHVEIVSENQKYNRLVKLLEDIMD 344

Query: 498 -------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   + +   ++              IHG  S  +++ V+  FK G   ++ AT V
Sbjct: 345 GGRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 404

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D   +I  +        +H++ GR GR     +    +    ++ +   +++
Sbjct: 405 AARGLDVKDVKFVINYDFPGSLEDYVHRI-GRTGRAGAKGTAYTFFTAANARFAKELITI 463

Query: 611 LKNTEDGFLIAEE 623
           L+  E G  +A E
Sbjct: 464 LE--EAGQRVAPE 474


>gi|15965498|ref|NP_385851.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
 gi|307302618|ref|ZP_07582374.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
 gi|307318465|ref|ZP_07597899.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|15074679|emb|CAC46324.1| Putative ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
 gi|306895805|gb|EFN26557.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|306902982|gb|EFN33573.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 499

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 78/368 (21%), Positives = 141/368 (38%), Gaps = 42/368 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI   LQ      R   +     G+GKT   ++ M   +E G       + +I
Sbjct: 25  PTPIQVGAIPPALQ------RRDILGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTLI 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   KY +N ++ + ++ G +    + + LER     A ++I T    
Sbjct: 79  LEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLER----GADVLICTPGRL 134

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--RT 434
            D  +  KL++  V     DE  R      +   ++           L  +AT  P  + 
Sbjct: 135 LDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSATMPPEIQK 194

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK----KAYWICP 490
           L    L + +  ++  + +    +    +  +  D     +   L   +     A   C 
Sbjct: 195 LADRFLQNPERLEVARRSSTAITVTQRFVAAHGKDYEKRAVLRELIRSQEDLKNAIIFCN 254

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         + V E F SL  H   S+  +HG M    + +++ +FK+G  KLL+A+ V
Sbjct: 255 R--------KKDVAELFRSLDRHG-FSVGALHGDMDQRSRMAMLANFKDGNIKLLVASDV 305

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D S +   +        +H++ GR GR     +   +     +K S     +
Sbjct: 306 AARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGAAFTIVTKRETKFSDAIEKL 364

Query: 611 LKNTEDGF 618
           +    + F
Sbjct: 365 IGQKVEWF 372


>gi|150401787|ref|YP_001325553.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           aeolicus Nankai-3]
 gi|150014490|gb|ABR56941.1| DEAD/DEAH box helicase domain protein [Methanococcus aeolicus
           Nankai-3]
          Length = 529

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 143/369 (38%), Gaps = 42/369 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           PT  Q+ AI  +L           + Q   G+GKT    + +   +E      QA+I+ P
Sbjct: 27  PTPIQKKAIPMLLDG-----DYDVVGQAQTGTGKTAAFGLPIIEKLENTDKEVQAIILTP 81

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +     +  + +  + G  P   + + L++      ++++GT     D 
Sbjct: 82  TRELALQVSDELNSLRGSKNLKIVAMYGGQPIQEQIRQLKK----GVNVVVGTPGRIMDH 137

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           ++   L        +L   DE    G    ++   + T          P  + L+ ++  
Sbjct: 138 LKRGTLRLHTIKYFVLDEADEMLDMGFIDDIEDILRYTN---------PDKKMLLFSATL 188

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-- 499
              I  + ++  G+  + + +   N   +++E++   +    K   +C  I+  KE    
Sbjct: 189 PRRIMGLAKRYMGKYKVIS-VKSENLTTDMVEQVYYEVRSSDKFEALCRVIDINKEFYGI 247

Query: 500 -FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F       N +    ++       +HG ++   +E +++ FK    K+L+AT V   GI
Sbjct: 248 VFCKTRAEVNDIANKLSAKGYFAEGLHGDIAQNQREKILNRFKAKRTKILVATDVAARGI 307

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV D + ++  +      A +H++ GR GR  +  + I    P   +         K   
Sbjct: 308 DVTDLTHVVNYDIPQNPEAYVHRI-GRTGRAGKRGTAITFVQPDEFRRLKDIKRTAKT-- 364

Query: 616 DGFLIAEED 624
               IA++D
Sbjct: 365 ---EIAKKD 370


>gi|294139294|ref|YP_003555272.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293325763|dbj|BAJ00494.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 478

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 149/387 (38%), Gaps = 45/387 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
           +P+  Q  AI  +L+          +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQAQAIPAVLEGKDV------MAAAQTGTGKTAGFTLPLLELLSRGNRAQAKKVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +   +   +I G +    +   L +       I++ T  
Sbjct: 77  LVLTPTRELAAQVAESVETYGKYLPLKSAVIFGGVGIGPQISKLGK----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++ + +L ++I+DE  R      +   +K      +L       + L+ ++
Sbjct: 133 RLLDLYNQGAVNFNQLEVLILDEADRMLDMGFIHDIKK------ILRVLPAKRQNLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               DI K+  K     P++  + P N   + +E+   ++ + +K   +   I++     
Sbjct: 187 TFSDDIRKLA-KGLVNNPVEISVTPRNATAKSVEQYIYMVDQKQKTAALIHLIKQNDWKQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E    + A IHG  S   +   + +FKNG  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKNGAVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++  +  +     +H++ GR GR       + L     SK       ++K 
Sbjct: 306 GIDIDQLPNVVNFDLPNVPEDYVHRI-GRTGRAGASGQAVSLVSGDESKLLRDIERLIKQ 364

Query: 614 TE-----DGFL----IAEEDLKQRKEG 631
                  +GF+    +AE DL   K G
Sbjct: 365 NIPRKEVEGFVPTQIVAETDLNDSKHG 391


>gi|228963331|ref|ZP_04124496.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796359|gb|EEM43802.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 510

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 86/431 (19%), Positives = 159/431 (36%), Gaps = 42/431 (9%)

Query: 269 IPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QA 324
           + F   T  Q   I   LQ          I Q   G+GKT    + +   V+      Q 
Sbjct: 1   MGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTNKEAVQG 54

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT  
Sbjct: 55  IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGTPG 110

Query: 385 LFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PIP- 432
              D I    L        +L   DE    G  + +   LT        LL +AT P P 
Sbjct: 111 RILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPI 170

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R +    + +    K+  K      I+   + +    +     +++  +  +   +  + 
Sbjct: 171 RRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRT 230

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  V+  +        +   IHG ++   + SV+  FK G  ++L+AT V  
Sbjct: 231 --------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAA 282

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+   + +   +      + +H++ GR GR  +    +L   P  S          K
Sbjct: 283 RGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 341

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIK-QSGMP-KFLIAQPELHDSLLEI-----ARKDAKH 665
              D       D     +  ++  K QS +  + L     + + +LE          A  
Sbjct: 342 RKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEENDSVTVVAAALK 401

Query: 666 ILTQDPDLTSV 676
           ++T++PD T +
Sbjct: 402 MMTKEPDTTPI 412


>gi|332532553|ref|ZP_08408430.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037974|gb|EGI74422.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 434

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/383 (16%), Positives = 136/383 (35%), Gaps = 38/383 (9%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 +   +I Q +      + T  Q +AI  + +          +     G+GKT  
Sbjct: 1   MNFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDV------LASAQTGTGKTAA 54

Query: 310 ALIAMAAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
             + +   +            A+++AP   LA+Q     + + ++T + V  + G +  A
Sbjct: 55  FALPIIQKLVESELSTTNAPHALVLAPTRELAEQIANNFRDFAKHTSLKVVSLFGGVSTA 114

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLK- 413
            +  AL+        I++ T     D I+           L+L   D     G  + ++ 
Sbjct: 115 GQANALKE----GVDIVVATPGRLFDHIRLGNLSLASVKHLVLDEADRMLDMGFIEDMQN 170

Query: 414 -LTQKATAPHVLLMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            +   A    +LL +AT     +      L   +I ++ +  +    ++ V+ P+    +
Sbjct: 171 VIKSCAEERQILLFSATFPAAIKQFASKVLKQAEIVRVDQTNSTASTVEHVVYPVEERRK 230

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
                +++  +  +   +   ++E  +       E    L+     +  + HG  S  ++
Sbjct: 231 QELLSELIGKKNWQQVLVFVNMKETAD-------ELVKELNLDGIPA-GVCHGDKSQGNR 282

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
              +  FK G  ++L+AT V   GID+     +I  +        +H++ GR GR     
Sbjct: 283 RRALREFKEGKVRVLVATEVAARGIDIDGLPRVINIDLPWLAEDYVHRI-GRTGRAGRQG 341

Query: 591 SCILLYHPPLSKNSYTRLSVLKN 613
             I           +   +++  
Sbjct: 342 QAISFVSREEENTLFEIETLIGQ 364


>gi|60115445|dbj|BAD90013.1| p68 RNA helicase [Tubifex tubifex]
          Length = 490

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/366 (20%), Positives = 129/366 (35%), Gaps = 39/366 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L  +        +     GSGKTL  ++     +          G  
Sbjct: 83  QPTPIQAQGWPIALSGLD------IVGIAQTGSGKTLSYILPAIIHINHQPRLQYGDGPV 136

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LAQQ  +  + +   + +    + G  P+  + + L+R     A I I T 
Sbjct: 137 CLVLVPTRELAQQVAQVAQLFGNTSSVRNVCVYGGAPKGPQIRDLQR----GAEICIATP 192

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D +   K        L+L   D     G   Q R  L Q       L+ +AT    
Sbjct: 193 GRLIDLLDAGKTNLQRCTYLVLDEADRMLDMGFEPQIRKILEQVRPDRQTLMWSATWPKE 252

Query: 434 TLVLTSLGDIDISKI----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              L      D  +I    T+  A    ++ V +      E      +    G+      
Sbjct: 253 VKQLAETFLTDYIQINIGSTQLTANHSILQIVDVCSEEEKESKLNRLLQEIMGESNNKTM 312

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +E K+ +N  +   +            A IHG  S  +++SV+  F+NG   +L+AT 
Sbjct: 313 VFVETKRRANDLAYKMKRAGWM------AACIHGDKSQEERDSVLRDFRNGRIPILVATD 366

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV D   ++  +  +     +H++ GR GR     +   L+ P  +  +   + 
Sbjct: 367 VAARGLDVDDVKFVVNFDYPNCSEDYVHRI-GRTGRAGHTGTAYTLFTPKNAPKARDLIE 425

Query: 610 VLKNTE 615
           VL    
Sbjct: 426 VLTEAN 431


>gi|325928505|ref|ZP_08189695.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
 gi|325541118|gb|EGD12670.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
          Length = 537

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 91/450 (20%), Positives = 161/450 (35%), Gaps = 45/450 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q + I  +L           + Q   G+GKT    + + +  +      QA+++A
Sbjct: 31  SPSPIQAATIPALLAGRDV------LGQAQTGTGKTAAFALPVLSNADLHQVKPQALVLA 84

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY +      V  + G  P A +  AL+R      H+++GT     
Sbjct: 85  PTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR----GVHVVVGTPGRVI 140

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP--RTL 435
           D +        Q   L+L   DE  R G    ++  L +      V L +AT  P  R +
Sbjct: 141 DHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATMPPAIRRI 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E      I  + +  
Sbjct: 201 AQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFARTKAA 260

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E       E    L     ++ AI +G M    +E  +   K+G   +L+AT V   G+
Sbjct: 261 TE-------ELAQKLQARGMAAAAI-NGDMQQAAREKTIAQLKDGKLDILVATDVAARGL 312

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P       +     +   
Sbjct: 313 DVERISHVLNYDIPYDTESYVHRI-GRTGRAGRNGDAILFVTPREKGMLRSIERATRQPI 371

Query: 616 DGFLIAEED-----LKQRKEGEILGIKQSGMPKFLIAQPELHDS-----LLEIARKDAKH 665
           +   +   D        R    I      G         + +++      ++IA   AK 
Sbjct: 372 EEMQLPSVDAVNDTRVARFMSRITETLAGGQIDMYRDLLQRYEAENNVPAIDIAAALAKL 431

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           +    P L +   +  R      + +E   
Sbjct: 432 LQGDAPFLLTPPVRGAREDTAPRERHERAD 461


>gi|319899018|ref|YP_004159111.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
 gi|319402982|emb|CBI76535.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
          Length = 454

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 85/365 (23%), Positives = 145/365 (39%), Gaps = 47/365 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q + I  ILQ    K  +L I Q   G+GKT   ++ M   +E G       + +
Sbjct: 28  TPTPIQSATIPHILQ----KKDVLGIAQ--TGTGKTASFVLPMLTLLEKGRARARIPRTL 81

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  +  + V ++ G +   H+ + LER     A I+I T   
Sbjct: 82  ILEPTRELAAQVKENYDKYGIHHNLNVALLIGGVSFEHQDRKLER----GADILIATPGR 137

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPR-- 433
             D  +  KL+LV V     DE  R      +   ++           L  +AT  P   
Sbjct: 138 LLDHFERGKLLLVGVEILVIDEADRMLDMGFIPNIERICKLTPFTRQTLFFSATMAPEIT 197

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVII-----PINRIDEVIERLKVVLSEGKKAYWI 488
            L    L      +IT+  +  K I   ++     P ++   + E +     E K A   
Sbjct: 198 QLTKKFLHSPIYVEITKTFSTAKTITQRLVKSGSKPWDKRAILRELIHKEGDELKNAIIF 257

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         + + E F SL +H   S+  +HG M    + + + +FK+    LL+A+
Sbjct: 258 CNR--------KKDISELFRSLVKH-NFSVGALHGDMDQHSRTNTLANFKDNKLTLLVAS 308

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+   S +   +        +H++ GR GR +       +     +K     +
Sbjct: 309 DVAARGLDIPAVSHVFNYDVPTHAEDYIHRI-GRTGRAKRNGKAFTIV----TKADEKYI 363

Query: 609 SVLKN 613
           + ++ 
Sbjct: 364 NAIEE 368


>gi|194365003|ref|YP_002027613.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194347807|gb|ACF50930.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 646

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 93/451 (20%), Positives = 164/451 (36%), Gaps = 51/451 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +P+  Q + I  +L+          + Q   G+GKT    + + + ++      QA+++A
Sbjct: 31  TPSPIQAATIPAMLEGRDV------LGQAQTGTGKTAAFALPVLSNIDLQQIKPQALVLA 84

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  + Y+ +     V  + G  P   +  AL R      HI++GT     
Sbjct: 85  PTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALRR----GVHIVVGTPGRVI 140

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRT--L 435
           D +            L+L   DE  R G    ++  L +      V L +AT  P+   +
Sbjct: 141 DHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPAKRQVALFSATMPPQIRRI 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E   A  I  +    
Sbjct: 201 AQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEVEPFDAMIIFART--- 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E   S  +    + A I+G M    +E  +   K G   +L+AT V   G+
Sbjct: 258 -----KAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAARGL 312

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P             +   
Sbjct: 313 DVERISHVLNYDIPYDTESYVHRI-GRTGRAGRSGEAILFATPREKGMLRQIERATRQPI 371

Query: 616 DGFLI----AEEDLKQRKE----GEILGIKQSGMPKFLIAQPELHDS-----LLEIARKD 662
           +   +    A  D +  K      E LG  Q G+  F     E  ++      +E+A   
Sbjct: 372 EEMQLPSVEAVNDNRINKFTSRITETLG--QGGL-DFYRQLLERFETEQNVPAIEVAAAL 428

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           AK +    P L     ++ R      +  E 
Sbjct: 429 AKMMQGDTPFLLQPPVRAPREERAPRERFER 459


>gi|78048530|ref|YP_364705.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036960|emb|CAJ24661.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 648

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 91/450 (20%), Positives = 161/450 (35%), Gaps = 45/450 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q + I  +L           + Q   G+GKT    + + +  +      QA+++A
Sbjct: 47  SPSPIQAATIPALLAGRDV------LGQAQTGTGKTAAFALPVLSNADLHQVKPQALVLA 100

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY +      V  + G  P A +  AL+R      H+++GT     
Sbjct: 101 PTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR----GVHVVVGTPGRVI 156

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP--RTL 435
           D +        Q   L+L   DE  R G    ++  L +      V L +AT  P  R +
Sbjct: 157 DHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPAQRQVALFSATMPPAIRRI 216

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E      I  + +  
Sbjct: 217 AQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFARTKAA 276

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E       E    L     ++ AI +G M    +E  +   K+G   +L+AT V   G+
Sbjct: 277 TE-------ELAQKLQARGMAAAAI-NGDMQQAAREKTIAQLKDGKLDILVATDVAARGL 328

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P       +     +   
Sbjct: 329 DVERISHVLNYDIPYDTESYVHRI-GRTGRAGRNGDAILFVTPREKGMLRSIERATRQPI 387

Query: 616 DGFLIAEED-----LKQRKEGEILGIKQSGMPKFLIAQPELHDS-----LLEIARKDAKH 665
           +   +   D        R    I      G         + +++      ++IA   AK 
Sbjct: 388 EEMQLPSVDAVNDTRVARFMSRITETLAGGQIDMYRDLLQRYEAENNVPAIDIAAALAKL 447

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           +    P L +   +  R      + +E   
Sbjct: 448 LQGDAPFLLTPPVRGAREDTAPRERHERAD 477


>gi|293375719|ref|ZP_06621991.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
           PC909]
 gi|325838961|ref|ZP_08166744.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
 gi|292645662|gb|EFF63700.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
           PC909]
 gi|325490616|gb|EGC92928.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
          Length = 538

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 69/341 (20%), Positives = 134/341 (39%), Gaps = 35/341 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q  AI  +L           I Q   G+GKT   ++ +   ++      QA+++ 
Sbjct: 26  KPSPIQAEAIPVVLAGKD------IIGQAQTGTGKTAAFMLPILEKIDPKNKNVQALVLC 79

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q +E  KK+++N + + +  I G      + +AL++       I++GT     
Sbjct: 80  PTRELAVQVHEESKKFSRNNRDVHILSIYGGQSYDPQIRALKK----GVQIVVGTPGRVM 135

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTL-- 435
           D ++           L+L   DE    G +  +   L +   +   ++ +AT     +  
Sbjct: 136 DHMRRGTLKLENLKMLVLDEADEMLNMGFKDDIEEILEKTPESRQTVMFSATMAREIMNI 195

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T   + ++ K+  +    K I    + + R D V   ++ +   G  +  +    +  
Sbjct: 196 AKTYQKNPEVVKVVSEELSNKKIDQYYVEVKRQDRVQAMIRCIDMMGLTSSIVFTNTK-- 253

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                R V E  + L E    +  + HG +    ++ VM+SF+     +L+AT +   GI
Sbjct: 254 -----REVDELVSKLQEEGYVTEGL-HGDLKQAQRDRVMNSFRRKNVNILVATDIAARGI 307

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           DV +   +   +        +H++ GR GR       I   
Sbjct: 308 DVSNVEAVFNYDIPLNEENYVHRI-GRTGRAGMTGLSITFV 347


>gi|212633675|ref|YP_002310200.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212555159|gb|ACJ27613.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 482

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 73/395 (18%), Positives = 151/395 (38%), Gaps = 45/395 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
           +P+  Q  AI  +L+          +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQAQAIPAVLEGKDV------MAAAQTGTGKTAGFTLPLLELLSKGNKAPAKQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +N  +   +I G +    +   L R       I++ T  
Sbjct: 77  LVLTPTRELAAQVGESVEIYGKNLPLKSAVIFGGVGIGPQISKLSR----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++ + +L ++++DE  R      +   +K      +L       + L+ ++
Sbjct: 133 RLLDLYNQRAVNFSQLEVLVLDEADRMLDMGFIHDIKK------ILAILPAKRQNLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               DI K+  K     P++  + P N     +++    + +G+KA  +   I++     
Sbjct: 187 TFSDDIRKLA-KGLVNNPVEISVTPRNATANTVKQWICPVDKGQKASVLVKLIKQHDWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     +    + A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANRLAKNLDAKGITAAAIHGNKSQGARTKALAEFKSGDVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++  +  +     +H++ GR GR       + L      K       ++K 
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGATGQAVSLVSDEEIKLLRDIELLIKQ 364

Query: 614 T-----EDGF----LIAEEDLKQRKEGEILGIKQS 639
                  +GF     + E DL ++  G+  G + S
Sbjct: 365 NLERRVIEGFEPSHKLPETDLTRKSHGQNKGPRNS 399


>gi|193683325|ref|XP_001948746.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Acyrthosiphon pisum]
          Length = 985

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 170/448 (37%), Gaps = 46/448 (10%)

Query: 195 QKKSFPSIAEA-FNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-- 251
           QKK  P I  A  + +   RK    E    +R      E    ++  + ++ +       
Sbjct: 255 QKKELPKIDHAEISYLPF-RKNFYVEVPEISRMTSEEIEKYKEELEGVRVKGKGCPRPIK 313

Query: 252 -GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
                 V  KI   + ++    PT  Q  AI  I+           I     GSGKTL  
Sbjct: 314 VWAHCGVSKKIMDNLKKHNYEKPTPIQTQAIPAIMAGRD------LIGIAKTGSGKTLAF 367

Query: 311 LIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           L+ M   +          G  A++MAP   L  Q  +  +K+T++  + V  + G    +
Sbjct: 368 LLPMFRHIMDQPPLEDTDGPIAIVMAPTRELCMQTGKEARKFTKSLGLRVVSVYGGTGIS 427

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKL 414
            +   L+R     A II+ T     D +           ++  V++DE  R         
Sbjct: 428 EQIAELKR----GAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQ 483

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                    ++    P  +T++ ++     +  +  +   +KP++  I   + + + +E+
Sbjct: 484 VM------RVIDNVRPDRQTVMFSATFPRQMEALARR-ILQKPVEVQIGGRSVVAKEVEQ 536

Query: 475 LKVVLSEGKKAYWICPQI----EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSD 527
             +++ E +K   +   +    E      F    E  ++L +    +      +HG +  
Sbjct: 537 HVIIVEEEQKFMKLLEVLGVYYERGSCIVFVDTHENADTLLQKLLKASYPCMSLHGAIDQ 596

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            D++S +  FK+G  KLL+AT+V   G+DV D  +++  +  +     +H+  GR GR  
Sbjct: 597 YDRDSTIVDFKSGQIKLLVATSVAARGLDVKDLILVVNYDCPNHYEDYVHR-CGRTGRAG 655

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
                  L  P   + +   +  L+ + 
Sbjct: 656 NKGFAYTLVSPDQERFAGDLIRALETSN 683


>gi|225579808|gb|ACN94086.1| unknown [Drosophila melanogaster]
          Length = 1198

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 161/413 (38%), Gaps = 44/413 (10%)

Query: 225 RERLAYDELLAGQIALLLMRKQF--KKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAI 281
           R   A  E     +  + ++ +   K           K   ++LR + F  PT  Q  AI
Sbjct: 482 RMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAI 541

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGIL 333
             I+           I     GSGKTL  ++ M   +          G  A+IMAP   L
Sbjct: 542 PAIMSGRD------LIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAIIMAPTREL 595

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--- 390
             Q  + I+K++++  +    + G    + +   L+R     A II+ T     D +   
Sbjct: 596 CMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAAN 651

Query: 391 -----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
                   ++  V++DE  R                  ++    P  +T++ ++     +
Sbjct: 652 SGRVTNLRRVTYVVLDEADRMFDMGFEPQVM------RIIDNVRPDRQTVMFSATFPRQM 705

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----SNFR 501
             +  +   +KPI+ ++   + + + +E+  V+L++  K + +   +   +E      F 
Sbjct: 706 EALARR-ILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSIIVFV 764

Query: 502 SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
              E  + L      +      +HG +   D++S +  FK+G  +LLIAT+V   G+DV 
Sbjct: 765 DKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVK 824

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           D  +++  +  +     +H+  GR GR  +  S      P  S+ +   +  +
Sbjct: 825 DLILVVNYDVPNHYEDYVHR-CGRTGRAGKKGSAYTFITPEQSRYAGDIIRAM 876


>gi|225579799|gb|ACN94078.1| unknown [Drosophila melanogaster]
          Length = 1195

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 161/413 (38%), Gaps = 44/413 (10%)

Query: 225 RERLAYDELLAGQIALLLMRKQF--KKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAI 281
           R   A  E     +  + ++ +   K           K   ++LR + F  PT  Q  AI
Sbjct: 482 RMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAI 541

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGIL 333
             I+           I     GSGKTL  ++ M   +          G  A+IMAP   L
Sbjct: 542 PAIMSGRD------LIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAIIMAPTREL 595

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--- 390
             Q  + I+K++++  +    + G    + +   L+R     A II+ T     D +   
Sbjct: 596 CMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAAN 651

Query: 391 -----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
                   ++  V++DE  R                  ++    P  +T++ ++     +
Sbjct: 652 SGRVTNLRRVTYVVLDEADRMFDMGFEPQVM------RIIDNVRPDRQTVMFSATFPRQM 705

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----SNFR 501
             +  +   +KPI+ ++   + + + +E+  V+L++  K + +   +   +E      F 
Sbjct: 706 EALARR-ILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSIIVFV 764

Query: 502 SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
              E  + L      +      +HG +   D++S +  FK+G  +LLIAT+V   G+DV 
Sbjct: 765 DKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVK 824

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           D  +++  +  +     +H+  GR GR  +  S      P  S+ +   +  +
Sbjct: 825 DLILVVNYDVPNHYEDYVHR-CGRTGRAGKKGSAYTFITPEQSRYAGDIIRAM 876


>gi|16126090|ref|NP_420654.1| DEAD-box ATP dependent DNA helicase [Caulobacter crescentus CB15]
 gi|221234860|ref|YP_002517296.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
 gi|13423288|gb|AAK23822.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
           crescentus CB15]
 gi|220964032|gb|ACL95388.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
          Length = 517

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 129/364 (35%), Gaps = 40/364 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVIM 327
           T  Q  AI   L           +     G+GKT    + +   +++G       +A+++
Sbjct: 26  TPIQAQAIPVALAGQDV------LGIAQTGTGKTAAFTLPLIDRLQSGRAKARMPRALVI 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA Q     +KY + T++   ++ G +    + K L+R       ++I T     
Sbjct: 80  APTRELADQVAASFEKYAKGTKLSWALLIGGVSFGDQEKKLDR----GVDVLIATPGRLL 135

Query: 388 DSIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           D  +  KL++  V        D     G                  L  +AT  P    L
Sbjct: 136 DHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTLFFSATMPPEITRL 195

Query: 438 TSLGDIDISKIT-EKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           T     D  +I   +PA      T     +   +   + +    ++   G +   +    
Sbjct: 196 TKQFLRDPVRIEVARPATTNANITQLLVKVPSSDPKAKRLALRALIEKAGIETGIVF--- 252

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N ++ V+      +      A IHG +    +   +  F++G  K+L+A+ V  
Sbjct: 253 -----CNRKTEVDIVAKSLKVHGYDAAPIHGDLDQTQRMKTLADFRSGALKILVASDVAA 307

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+   S +   +  H     +H++ GR GR        +L  P   K     + ++ 
Sbjct: 308 RGLDIPAVSHVFNYDVPHHADDYVHRI-GRTGRAGRTGITYMLVTPADDKGFDKVIKLIG 366

Query: 613 NTED 616
           +T D
Sbjct: 367 STPD 370


>gi|254497847|ref|ZP_05110613.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
 gi|254352925|gb|EET11694.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
          Length = 584

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 78/368 (21%), Positives = 133/368 (36%), Gaps = 35/368 (9%)

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
                N    I Q +      +P+  Q   I   L+          I     G+GKT   
Sbjct: 7   NFASFNFSDAINQALEDMKFTTPSPIQTQTIPLFLEGRD------AIALAQTGTGKTAAF 60

Query: 311 LIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKK-YTQNTQIIVEIITGNMPQAHRRK 366
            + +   +     G QA+I+AP   LA Q  E  +    +     V  + G      + K
Sbjct: 61  ALPILQKITPNGQGTQALILAPTRELAIQVAEQFELLSARQHGTKVATLCGGQEYGRQLK 120

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQ 416
            L       A I++GT     D I+   L        IL   DE  R G  + +   + +
Sbjct: 121 QLRA----GAQIVVGTPGRILDHIEKGTLQLSNLRTFILDEADEMLRMGFIEDIETIMAK 176

Query: 417 KATAPHVLLMTATPIPR--TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                 + L +AT   R   +  T L +    +I  + A  K I+   +  +   +    
Sbjct: 177 LPEQKQIGLFSATMPHRIRQIANTYLNNPASIEIRSETATVKSIEQRFLFASGHQKPDAL 236

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           ++V+  E  +   +  +         +S  E    L +        IHG ++   +E ++
Sbjct: 237 VRVLAVEEYQGVIVFVRT--------KSSTEEVAELLQQQGLRAMAIHGDITQALRERII 288

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F+ G   +L+AT V   G+DV   + +I  +  H     +H++ GR GR       IL
Sbjct: 289 AQFRQGAIDILVATDVAARGLDVERVTHVINYDLPHDNETYVHRI-GRTGRAGRSGVAIL 347

Query: 595 LYHPPLSK 602
              P  S+
Sbjct: 348 FVTPKESR 355


>gi|194747363|ref|XP_001956121.1| GF24750 [Drosophila ananassae]
 gi|190623403|gb|EDV38927.1| GF24750 [Drosophila ananassae]
          Length = 613

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 135/371 (36%), Gaps = 47/371 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q  A    +      + M+ I     GSGKTL  ++     +          G  
Sbjct: 138 EPTPIQAQAWPIAM----SGHNMVGI--AKTGSGKTLAFILPAILHINGQQPLQRGDGPI 191

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ       +  +  +    I G  P++ +   LER       I+I T 
Sbjct: 192 ALVLAPTRELAQQIQSVANDFGSSAYVRNTCIFGGAPRSRQANDLER----GVQIVIATP 247

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +Q           L+L   D     G +Q+++           L    P  + L
Sbjct: 248 GRLLDFLQGGATNLKRCTYLVLDEADRMLDMGFEQQIRKI---------LGQIRPDRQIL 298

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    ++ K+ E   G      +       +  I +   V +E +K   +   +   
Sbjct: 299 MWSATWPKEVRKLAEDFLGNYIQINIGSLELSANHNIRQFVEVCAEHEKGGKLKDLLSHI 358

Query: 496 KESNF-----------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            + +            +  V+        F   +  IHG  S +D++SV++ F+NG   +
Sbjct: 359 YDQSTSPGKIIIFVATKKKVDELARFINAFGVGVGSIHGDKSQMDRDSVLNDFRNGRHNI 418

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT V   G+DV     +I  +        +H++ GR GR     +    +    +K +
Sbjct: 419 LVATDVAARGLDVDGIKYVINFDFPQSSEDYVHRI-GRTGRKHSTGTSYAFFTRKNAKCA 477

Query: 605 YTRLSVLKNTE 615
              + +L+   
Sbjct: 478 RALIEILREAN 488


>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 494

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 70/387 (18%), Positives = 148/387 (38%), Gaps = 45/387 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +P+  Q  AI  +L+          +     G+GKT    + +   +  G +A       
Sbjct: 23  TPSPIQAQAIPAVLEGKDV------MAAAQTGTGKTAGFTLPLLELLSRGKRAPAKQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +N  +   +I G +    +   L +       I++ T  
Sbjct: 77  LVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVGIGPQISKLGK----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++ + +L ++++DE  R      +   +K       ++   P  R  ++ S
Sbjct: 133 RLLDLYNQGAVSFKQLEVLVLDEADRMLDMGFIHDIKK-------ILKILPAKRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N   + +E+    + + +K   +   +++ +   
Sbjct: 186 ATFSDDIRNLAKGLVNNPVEISVTPRNATAKTVEQYIYPVDQKQKTAALIHLVKQNEWKQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E    + A IHG  S   +   + +FK+G  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANRIAKNLEASGLTAAAIHGNKSQGARTKALANFKSGEVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++  +  +     +H++ GR GR       + L     SK       ++K 
Sbjct: 306 GIDIDQLPNVVNFDLPNVPEDYVHRI-GRTGRAGANGQAVSLVSGDESKLLRDIERLIKQ 364

Query: 614 TE-----DGF----LIAEEDLKQRKEG 631
                  +GF    ++ + DL  +K G
Sbjct: 365 NIPRKEVEGFVPTQVLPDNDLNSQKHG 391


>gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 539

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 131/346 (37%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +P+  Q  AI  +LQ          +     G+GKT    + +   +  G +A       
Sbjct: 23  TPSPIQAQAIPAVLQGQDV------MAAAQTGTGKTAGFTLPLLELLSKGQKAQAGQVRT 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +   +   ++ G +P   +   L         +++ T  
Sbjct: 77  LVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRH----GVDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 133 RLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRK-------ILAILPKQRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +++    + +G+K+  +   I++     
Sbjct: 186 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKSALLTQLIKQHDWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   +  FKNG  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+     ++  +  +     +H++ GR GR       + L    
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGQAVSLVSSE 350


>gi|319408422|emb|CBI82077.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1]
          Length = 470

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 147/367 (40%), Gaps = 51/367 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q   I  +LQ      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 28  APTPIQSETIPHVLQ------RKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 81

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LE+     A ++I T   
Sbjct: 82  ILEPTRELAAQVQENFDKYGLNHRLNVVLLIGGVSFEDQNRKLEQ----GADVLIATPGR 137

Query: 386 FQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L+     ++DE  R      +   ++       +   TP   +TL  ++
Sbjct: 138 LLDHFERGKLLLIGTEILVIDEADRMLDMGFIPDIER-------ICKLTPFTRQTLFFSA 190

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY----WICPQIEE- 494
               +I+K+TE+     PI   +   +     I   + ++  G KA+     +   I+  
Sbjct: 191 TMAPEITKLTEQFL-HSPICVEVTKASSTATTI--TQRLVKSGSKAWDKRAVLRELIDNE 247

Query: 495 --------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                      +  + + E F SL ++   S+  +HG M    + + +  FK+    LL+
Sbjct: 248 GDELKNAIIFCNRKKDISELFRSLTKY-NFSVGALHGDMDQHSRMNTLADFKDNKLTLLV 306

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           A+ V   G+D+ D S +   +        +H++ GR GR +       +     + +   
Sbjct: 307 ASDVAARGLDIPDVSHVFNYDVPTHAEDYIHRI-GRTGRAKRSGKAFTIV----THDDQK 361

Query: 607 RLSVLKN 613
            +S ++ 
Sbjct: 362 YISAIEK 368


>gi|225579790|gb|ACN94070.1| unknown [Drosophila melanogaster]
          Length = 1198

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 161/413 (38%), Gaps = 44/413 (10%)

Query: 225 RERLAYDELLAGQIALLLMRKQF--KKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAI 281
           R   A  E     +  + ++ +   K           K   ++LR + F  PT  Q  AI
Sbjct: 482 RMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAI 541

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGIL 333
             I+           I     GSGKTL  ++ M   +          G  A+IMAP   L
Sbjct: 542 PAIMSGRD------LIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAIIMAPTREL 595

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--- 390
             Q  + I+K++++  +    + G    + +   L+R     A II+ T     D +   
Sbjct: 596 CMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAAN 651

Query: 391 -----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
                   ++  V++DE  R                  ++    P  +T++ ++     +
Sbjct: 652 SGRVTNLRRVTYVVLDEADRMFDMGFEPQVM------RIIDNVRPDRQTVMFSATFPRQM 705

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----SNFR 501
             +  +   +KPI+ ++   + + + +E+  V+L++  K + +   +   +E      F 
Sbjct: 706 EALARR-ILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSIIVFV 764

Query: 502 SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
              E  + L      +      +HG +   D++S +  FK+G  +LLIAT+V   G+DV 
Sbjct: 765 DKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVK 824

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           D  +++  +  +     +H+  GR GR  +  S      P  S+ +   +  +
Sbjct: 825 DLILVVNYDVPNHYEDYVHR-CGRTGRAGKKGSAYTFITPEQSRYAGDIIRAM 876


>gi|152974078|ref|YP_001373595.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152022830|gb|ABS20600.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 511

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 159/433 (36%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
             + F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 30  EKMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLEKVDTNKEMV 83

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  Q+ ++ +  I G      + +AL++    + HII+GT
Sbjct: 84  QGIVIAPTRELAIQVGEELYKIGQHKRVRILPIYGGQDINRQIRALKK----RPHIIVGT 139

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 140 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPE 199

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 200 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 259

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G+ ++L+AT V
Sbjct: 260 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 311

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P            
Sbjct: 312 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKTGLAMLFVTPREMGQLKNIERT 370

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMP-KFLIAQPELHDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +    L     + + +LE          A
Sbjct: 371 TKRKMDRMKAPTLDEALEGQQRLIAEKLQSAIENDNLSYYKRIAEEMLEENDSVAVVAAA 430

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 431 LKMMTKEPDTTPI 443


>gi|325918892|ref|ZP_08180966.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
           35937]
 gi|325534878|gb|EGD06800.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
           35937]
          Length = 636

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 138/369 (37%), Gaps = 35/369 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q + I  +L           + Q   G+GKT    + + +  +      QA+++A
Sbjct: 31  SPSPIQAATIPALLAGRDV------LGQAQTGTGKTAAFALPVLSNADLNQLKPQALVLA 84

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY +      V  + G  P A +  AL+R      H+++GT     
Sbjct: 85  PTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR----GVHVVVGTPGRVI 140

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP--RTL 435
           D +        Q   L+L   DE  R G    ++  L +      V L +AT  P  R +
Sbjct: 141 DHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPPAIRRI 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E      I  +    
Sbjct: 201 AQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFART--- 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E      +    + A I+G M    +E  +   K+G   +L+AT V   G+
Sbjct: 258 -----KAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGL 312

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P       +     +   
Sbjct: 313 DVERVSHVLNYDIPYDTESYVHRI-GRTGRAGRNGDAILFVTPREKGMLRSIERATRQPI 371

Query: 616 DGFLIAEED 624
           +   +   D
Sbjct: 372 EEMQLPSVD 380


>gi|296087640|emb|CBI34896.3| unnamed protein product [Vitis vinifera]
          Length = 1180

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 144/377 (38%), Gaps = 44/377 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +PT  Q  +    LQ          +     GSGKTL  LI     ++        G   
Sbjct: 44  APTPIQAQSWPVALQSRD------IVAIAKTGSGKTLGYLIPGFIHLKRIRNNPQMGPTV 97

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q  +   K+ +++++    + G  P+  + + L+R     A I++ T  
Sbjct: 98  LVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDR----GADIVVATPG 153

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT 434
              D ++  +        L+L   D     G   Q R  + +       L+ TAT     
Sbjct: 154 RLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEV 213

Query: 435 L-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +L +   ++I  + E  A +   + V ++P     + +E++      G K    
Sbjct: 214 RKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQEPGSKIIIF 273

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C        S  +   +   +L   F +  A IHG  S  +++ V++ F+ G   +L+AT
Sbjct: 274 C--------STKKMCDQLARNLTRPFGA--AAIHGDKSQGERDYVLNQFRTGRSPVLVAT 323

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D  ++I  +        +H++ GR GR          +    +K +   +
Sbjct: 324 DVAARGLDIKDIRVVINYDFPTGVEDYVHRI-GRTGRAGATGVAYTFFAEQDAKYASDLV 382

Query: 609 SVLKNTEDGFLIAEEDL 625
            VL+           D+
Sbjct: 383 KVLEGANQRVPPEIRDM 399


>gi|225452412|ref|XP_002273908.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1226

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 144/377 (38%), Gaps = 44/377 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +PT  Q  +    LQ          +     GSGKTL  LI     ++        G   
Sbjct: 184 APTPIQAQSWPVALQSRD------IVAIAKTGSGKTLGYLIPGFIHLKRIRNNPQMGPTV 237

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q  +   K+ +++++    + G  P+  + + L+R     A I++ T  
Sbjct: 238 LVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDR----GADIVVATPG 293

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT 434
              D ++  +        L+L   D     G   Q R  + +       L+ TAT     
Sbjct: 294 RLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEV 353

Query: 435 L-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +L +   ++I  + E  A +   + V ++P     + +E++      G K    
Sbjct: 354 RKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQEPGSKIIIF 413

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C        S  +   +   +L   F +  A IHG  S  +++ V++ F+ G   +L+AT
Sbjct: 414 C--------STKKMCDQLARNLTRPFGA--AAIHGDKSQGERDYVLNQFRTGRSPVLVAT 463

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D  ++I  +        +H++ GR GR          +    +K +   +
Sbjct: 464 DVAARGLDIKDIRVVINYDFPTGVEDYVHRI-GRTGRAGATGVAYTFFAEQDAKYASDLV 522

Query: 609 SVLKNTEDGFLIAEEDL 625
            VL+           D+
Sbjct: 523 KVLEGANQRVPPEIRDM 539


>gi|260777273|ref|ZP_05886167.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606939|gb|EEX33213.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 641

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 145/365 (39%), Gaps = 27/365 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q +AI  +++          + +   G+GKT    + +   +E      QA+++A
Sbjct: 28  SPTPIQAAAIPHLMEG------TDALGKAQTGTGKTAAFSLPLLNKLELSQRKPQAIVLA 81

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN + + V  I G      + +AL       AHI++GT    Q
Sbjct: 82  PTRELAIQVAAEIKNLGQNISGLKVLEIYGGASIVDQMRAL----KNGAHIVVGTPGRVQ 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDI 445
           D I   +L    +DE H F + +  ++        V  ++  A    + ++ ++     +
Sbjct: 138 DLINRERL---HLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQRVLFSATMPPML 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
             I E+   R PI   +   N   + +E+   V+   +K   +   +E ++         
Sbjct: 195 KNIVERFL-RDPITIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            + +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V K++ +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQ 372

Query: 620 IAEED 624
           +   D
Sbjct: 373 LPLRD 377


>gi|229074285|ref|ZP_04207329.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
 gi|229094946|ref|ZP_04225949.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
 gi|229113900|ref|ZP_04243333.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
 gi|228669561|gb|EEL24970.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
 gi|228688479|gb|EEL42354.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
 gi|228708837|gb|EEL60966.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
          Length = 529

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 159/433 (36%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTRKEAV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G  ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMP-KFLIAQPELHDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +    L     + + +LE          A
Sbjct: 359 TKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|312372785|gb|EFR20671.1| hypothetical protein AND_19720 [Anopheles darlingi]
          Length = 1061

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 132/371 (35%), Gaps = 47/371 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  AI  +L+          +     GSGKT   ++ M   +  G Q        
Sbjct: 139 KPTPIQRHAIPIVLKGRD------MMGCAQTGSGKTAAFMLPMIDWIL-GQQDLQLHHRQ 191

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++AP   L  Q ++  +K++  T + V  I G     H+ + L     G   I++ 
Sbjct: 192 PYVLVVAPTRELVIQIHDEARKFSHGTGLKVVCIYGGAASTHQLQMLR----GGCQIMVA 247

Query: 382 THALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQK---------ATAPHVLLMT 427
           T     D      + + K+  V++DE  R      L   +K               L+ +
Sbjct: 248 TPGRLLDFMDRGVVSFEKVKYVVLDEADRMLDMGFLPAIEKVMGNATMPSKDQRQTLMFS 307

Query: 428 AT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           AT  P  + L    L +     +         ++ V+  + +  +   +    L     A
Sbjct: 308 ATFAPDIQQLAGVFLNNYIYVAVGIVGGACGDVEQVVYEVEKFKK--RKKLEELLGEGNA 365

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
                 +E K+ +++        SL          IHG     ++E  +  FK G   +L
Sbjct: 366 RGTLVFVETKRSADY------LASLMSETKFPTTSIHGDRLQREREMALKDFKEGRMDVL 419

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN-S 604
           IAT+V   G+D+ + S ++  +        +H++ GR GR          Y P      +
Sbjct: 420 IATSVAARGLDIKNVSHVVNYDLPKNIDDYVHRI-GRTGRVGNKGRATSFYDPTADYAIA 478

Query: 605 YTRLSVLKNTE 615
              + +L+   
Sbjct: 479 GDLVKILQQAN 489


>gi|56963965|ref|YP_175696.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
 gi|56910208|dbj|BAD64735.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
          Length = 537

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 143/375 (38%), Gaps = 39/375 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++  ++ Q I       P+  QE AI  IL           I Q   G+GKT    I +
Sbjct: 7   FDISDQVKQAIQDMGFEEPSPIQEKAIPAILTG------GDVIGQAQTGTGKTAAFGIPV 60

Query: 315 AAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
              V      QA+I+ P   LA Q    ++K + + +I    I G     H+ KAL +  
Sbjct: 61  VDKVTEERYIQALILTPTRELAIQVSGELQKLSAHKRIRTLPIYGGQSIGHQIKALRQ-- 118

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPH 422
                ++IGT     D ++   L L  V        DE    G    +   L +      
Sbjct: 119 --GVQVVIGTPGRMLDHLRRGTLKLNSVHTVVLDEADEMLDMGFVDDIEAILKEVNQVRQ 176

Query: 423 VLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            LL +AT  P  R L    + D     I +       I  V   +   +++    +++ S
Sbjct: 177 TLLFSATMPPAIRKLSRKYMNDPKTVTINKGEVTAPSINQVYYKVLERNKIDSLCRIIDS 236

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
           +  +   +  + +           +    L E   +    +  +HG ++   ++ VM  F
Sbjct: 237 DDVELGILFCRTK-----------KGVAELTEALQARGYLVDGLHGDLTQSQRDVVMKKF 285

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++ + + LIAT V   GIDV + + +I  +      + +H++ GR GR     + I L  
Sbjct: 286 RDSSIEFLIATDVAARGIDVENVTHVINYDIPQDPESYVHRI-GRTGRAGRTGAAITLVT 344

Query: 598 PPLSKNSYTRLSVLK 612
           P   K+  +    +K
Sbjct: 345 PREMKHLRSIEKEIK 359


>gi|332243110|ref|XP_003270725.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Nomascus leucogenys]
          Length = 938

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 200 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 252

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 306

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 367 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 423 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 472

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 473 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 532

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 533 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 591

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 636


>gi|301778305|ref|XP_002924562.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Ailuropoda
           melanoleuca]
          Length = 935

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 200 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 252

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 306

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 367 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 423 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 472

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 473 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 532

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 533 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 591

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 636


>gi|296201782|ref|XP_002748184.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Callithrix jacchus]
          Length = 934

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 200 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 252

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 306

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 367 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 423 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 472

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 473 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 532

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 533 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 591

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 636


>gi|291406357|ref|XP_002719521.1| PREDICTED: DEAD box polypeptide 42 protein [Oryctolagus cuniculus]
          Length = 935

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 200 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 252

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 306

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 367 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 423 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 472

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 473 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 532

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 533 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 591

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 636


>gi|289724644|gb|ADD18300.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 652

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 86/371 (23%), Positives = 139/371 (37%), Gaps = 40/371 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           ++ + F  PT  Q       L        M+ + Q   GSGKTL  ++     +      
Sbjct: 133 IKKLGFAKPTAIQAQGWPIAL----SGRDMVGVAQ--TGSGKTLAYVLPAVVHINNQPRL 186

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G  A+I+AP   LAQQ  +   ++    Q+    I G  P+  + + LER      
Sbjct: 187 EHSDGPIALILAPTRELAQQIQQVANEFGSQIQVRNTCIFGGAPKQPQSRDLER----GV 242

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLM 426
            I+I T     D ++           L+L   D     G   Q R  + Q      VL+ 
Sbjct: 243 EIVIATPGRLIDFLERGVTNLRRCTYLVLDEADRMLDMGFEPQIRKIIKQIRPDRQVLMW 302

Query: 427 TATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--G 482
           +AT     R L    L +     I             I+ +    E   +L  +L E   
Sbjct: 303 SATWPKEVRNLAEEFLDNYIQINIGSLTLSANHNILQIVDVCEEAEKTNKLNKLLGEISS 362

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K       +E KK  +     E   S+      + AI HG  S  +++ V+ SF+NG  
Sbjct: 363 EKDTKTIIFVETKKRVD-----EITRSISRQGWRACAI-HGDKSQQERDYVLTSFRNGRS 416

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+DV D   +I  +        +H++ GR GR     +   L+    + 
Sbjct: 417 SILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRI-GRTGRSNNTGTAYTLFTTANAN 475

Query: 603 NSYTRLSVLKN 613
            +   + VL+ 
Sbjct: 476 KANDLIQVLRE 486


>gi|281351661|gb|EFB27245.1| hypothetical protein PANDA_013938 [Ailuropoda melanoleuca]
          Length = 940

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 205 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 257

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 258 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 311

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 312 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 371

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 372 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 427

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 428 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 477

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 478 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 537

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 538 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 596

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 597 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 641


>gi|194216767|ref|XP_001501051.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Equus caballus]
          Length = 935

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 200 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 252

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 306

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 367 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 423 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 472

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 473 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 532

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 533 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 591

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 636


>gi|119614682|gb|EAW94276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Homo
           sapiens]
          Length = 828

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 90  LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 142

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 143 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 196

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 197 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 256

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 257 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 312

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 313 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 362

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 363 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 422

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 423 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 481

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 482 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 526


>gi|119614684|gb|EAW94278.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_c [Homo
           sapiens]
          Length = 936

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 198 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 250

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 251 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 304

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 305 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 364

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 365 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 420

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 421 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 470

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 471 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 530

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 531 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 589

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 590 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 634


>gi|114669826|ref|XP_001147663.1| PREDICTED: DEAD box polypeptide 42 protein isoform 5 [Pan
           troglodytes]
 gi|114669828|ref|XP_001147738.1| PREDICTED: DEAD box polypeptide 42 protein isoform 6 [Pan
           troglodytes]
 gi|114669830|ref|XP_001147818.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 7 [Pan
           troglodytes]
 gi|114669832|ref|XP_001147880.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 8 [Pan
           troglodytes]
          Length = 938

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 200 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 252

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 306

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 367 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 423 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 472

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 473 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 532

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 533 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 591

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 636


>gi|114669834|ref|XP_001147587.1| PREDICTED: DEAD box polypeptide 42 protein isoform 4 [Pan
           troglodytes]
          Length = 775

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 37  LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 89

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 90  SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 143

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 144 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 203

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 204 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 259

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 260 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 309

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 310 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 369

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 370 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 428

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 429 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 473


>gi|109116835|ref|XP_001116381.1| PREDICTED: ATP-dependent RNA helicase DDX42-like isoform 5 [Macaca
           mulatta]
 gi|109116837|ref|XP_001116390.1| PREDICTED: ATP-dependent RNA helicase DDX42-like isoform 6 [Macaca
           mulatta]
          Length = 937

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 200 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 252

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 306

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 367 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 423 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 472

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 473 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 532

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 533 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 591

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 636


>gi|51258614|gb|AAH78667.1| DDX42 protein [Homo sapiens]
          Length = 919

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 181 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 233

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 234 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 287

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 288 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 347

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 348 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 403

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 404 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 453

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 454 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 513

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 514 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 572

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 573 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 617


>gi|15930131|gb|AAH15505.1| DDX42 protein [Homo sapiens]
 gi|23336904|tpg|DAA00077.1| TPA_exp: SF3b125 DEAD-box protein [Homo sapiens]
 gi|158259277|dbj|BAF85597.1| unnamed protein product [Homo sapiens]
          Length = 819

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 81  LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 133

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 134 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 187

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 188 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 247

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 248 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 303

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 304 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 353

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 354 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 413

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 414 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 472

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 473 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 517


>gi|3435312|gb|AAC32396.1| RNA helicase-related protein [Homo sapiens]
          Length = 709

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 81  LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 133

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 134 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 187

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 188 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 247

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 248 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 303

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 304 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 353

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 354 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 413

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 414 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 472

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 473 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 517


>gi|45446743|ref|NP_031398.2| ATP-dependent RNA helicase DDX42 [Homo sapiens]
 gi|45446747|ref|NP_987095.1| ATP-dependent RNA helicase DDX42 [Homo sapiens]
 gi|74750541|sp|Q86XP3|DDX42_HUMAN RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42; AltName: Full=RNA helicase-like protein;
           Short=RHELP; AltName: Full=RNA helicase-related protein;
           Short=RNAHP; AltName: Full=SF3b DEAD box protein;
           AltName: Full=Splicing factor 3B-associated 125 kDa
           protein; Short=SF3b125
 gi|29420431|dbj|BAC66466.1| RNA helicase-related protein [Homo sapiens]
 gi|62205357|gb|AAH93081.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Homo sapiens]
 gi|119614683|gb|EAW94277.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Homo
           sapiens]
 gi|168277556|dbj|BAG10756.1| ATP-dependent RNA helicase DDX42 [synthetic construct]
          Length = 938

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 200 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 252

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 306

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 367 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 423 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 472

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 473 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 532

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 533 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 591

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 636


>gi|172056656|ref|YP_001813116.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171989177|gb|ACB60099.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 530

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 160/440 (36%), Gaps = 58/440 (13%)

Query: 269 IPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QA 324
           + F   T  Q   I   L        +  I Q   G+GKT    I     ++A     QA
Sbjct: 20  MGFEEATPIQAETIPVGLSG------VDLIGQAQTGTGKTAAFGIPTIERLDAKSRYIQA 73

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+AP   LA Q  E + +  +  ++    + G      + +AL +       I++ T  
Sbjct: 74  LILAPTRELAIQVAEELNRIGEVKRVHALPVYGGQQIDRQIRALRK----NPQIVVATPG 129

Query: 385 LFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
              D +    L L  V        DE    G  + ++           L T  P  +TL+
Sbjct: 130 RLMDHMNRKTLNLDHVQTVILDEADEMLNMGFVEDIEKI---------LGTLPPTRQTLL 180

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     I KI ++     P    +       E I++  + L E +K   +C  I+   
Sbjct: 181 FSATMPPQIRKIADRFMT-TPTHIKVKAKEMTVENIDQSFIELKESQKFDVLCRLIDTDS 239

Query: 497 E---SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                 F    +R + + E           +HG ++   ++ V+  FK GT  +L+AT V
Sbjct: 240 PELSIIFGRTKKRVDEMTEGLIQRGYTADGLHGDLTQAKRDQVIRRFKKGTIDILVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL---------- 600
              G+D+   + +   +      + +H++ GR GR  +  S I    P            
Sbjct: 300 AARGLDISGVTHVYNFDVPQDPESYVHRI-GRTGRAGKTGSAITFVTPREFGQIKTIERV 358

Query: 601 --SKNSYTRLSVLKNTEDG-FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
              K S      L    +G   +A ++L +R    +                E ++++  
Sbjct: 359 TNKKMSRRHAPTLDEILEGNLKLAAQELIKR----VEAKNSQEYTTLAQELLEEYEAVEL 414

Query: 658 IARKDAKHILTQDPDLTSVR 677
           IA   A   LT++PD T V+
Sbjct: 415 IA--AALKGLTKEPDATPVQ 432


>gi|66767801|ref|YP_242563.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188990915|ref|YP_001902925.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
           campestris str. B100]
 gi|66573133|gb|AAY48543.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167732675|emb|CAP50869.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
           campestris]
          Length = 642

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 92/450 (20%), Positives = 165/450 (36%), Gaps = 45/450 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q + I  +L           + Q   G+GKT    + + +  +      QA+++A
Sbjct: 31  TPSPIQAATIPALLAGRDV------LGQAQTGTGKTAAFALPVLSNADLNQVKPQALVLA 84

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY +      V  + G  P A +  AL+R      H+++GT     
Sbjct: 85  PTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR----GVHVVVGTPGRVI 140

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP--RTL 435
           D +        Q   L+L   DE  R G    ++  L +      V L +AT  P  R +
Sbjct: 141 DHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPPAIRRI 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E      I  +    
Sbjct: 201 AQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFART--- 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E      +    + A I+G M    +E  +   K+G   +L+AT V   G+
Sbjct: 258 -----KAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGL 312

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P             +   
Sbjct: 313 DVERVSHVLNYDIPYDTESYVHRI-GRTGRAGRNGDAILFVTPREKGMLRAIERATRQPI 371

Query: 616 DGFLIAEED--LKQRKEG------EILGIKQSGMPKFLIAQPELHDSL--LEIARKDAKH 665
           +   +   D     R         E L   Q  M + L+ + E  +++  ++IA   AK 
Sbjct: 372 EEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVPAIDIAAAMAKL 431

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           +    P L +   +  R      + N+   
Sbjct: 432 LQGDAPFLLTPPVRGAREDFAPRERNDRAD 461


>gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 550

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 131/346 (37%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +P+  Q  AI  +LQ          +     G+GKT    + +   +  G +A       
Sbjct: 34  TPSPIQAQAIPAVLQGQDV------MAAAQTGTGKTAGFTLPLLELLSKGQKAQAGQVRT 87

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +   +   ++ G +P   +   L         +++ T  
Sbjct: 88  LVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRH----GVDVLVATPG 143

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 144 RLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRK-------ILAILPKQRQNLMFS 196

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +++    + +G+K+  +   I++     
Sbjct: 197 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKSALLTQLIKQHDWQQ 256

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   +  FKNG  ++L+AT +   
Sbjct: 257 VLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVATDIAAR 316

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+     ++  +  +     +H++ GR GR       + L    
Sbjct: 317 GLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGQAVSLVSSE 361


>gi|241204840|ref|YP_002975936.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858730|gb|ACS56397.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 521

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 74/362 (20%), Positives = 140/362 (38%), Gaps = 40/362 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI   L+      R         G+GKT   ++ M + +E G       + +I
Sbjct: 31  PTPIQAGAIPFALE------RRDICGIAQTGTGKTASFVLPMLSLLEKGRARARMPRTLI 84

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  +KY +N ++ V ++ G +    + + LER     A ++I T    
Sbjct: 85  LEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER----GADVLICTPGRL 140

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTSL 440
            D  +  KL++  V     DE  R      +   ++       +    P   +TL  ++ 
Sbjct: 141 LDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIER-------IAKMIPFTRQTLFFSAT 193

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
              +I K+ ++         V  P +  + V +R      +  +   +  ++   +    
Sbjct: 194 MPSEIQKLADRFLQNPERIEVAKPASAAETVTQRFVASHGKDYEKRAVLRELVRAQTELK 253

Query: 497 -----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                 +  + V + F SL  H   S+  +HG M    +   + SF++G  +LL+A+ V 
Sbjct: 254 NAIVFCNRKKDVADLFRSLERHG-FSVGALHGDMDQRSRTMTLQSFRDGNLQLLVASDVA 312

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D S +   +        +H++ GR GR     +   L     +K       ++
Sbjct: 313 ARGLDIPDVSHVFNFDVPIHSEDYVHRI-GRTGRAGRSGAAFTLVTKRDTKFVDAIEKLI 371

Query: 612 KN 613
             
Sbjct: 372 GE 373


>gi|238925630|ref|YP_002939147.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
           33656]
 gi|238877306|gb|ACR77013.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
           33656]
 gi|291524137|emb|CBK89724.1| Superfamily II DNA and RNA helicases [Eubacterium rectale DSM
           17629]
 gi|291527820|emb|CBK93406.1| Superfamily II DNA and RNA helicases [Eubacterium rectale M104/1]
          Length = 530

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 79/364 (21%), Positives = 132/364 (36%), Gaps = 36/364 (9%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           ++++ F   T  Q   I  +L           I Q   G+GKT    I +  +V+A    
Sbjct: 19  IKDMGFEEATPIQAQGIPAVLSGRDV------IGQAQTGTGKTAAFGIPVLESVDASSHK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +I++P   LA Q  + I+K  +    + V  + G    + + KAL     G   III
Sbjct: 73  TQVIILSPTRELAIQVADEIRKLAKYMHGVKVLPVYGGQDISRQIKAL----KGGVQIII 128

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATP 430
           GT     D ++   +        +L   DE    G ++ ++  L         +L +AT 
Sbjct: 129 GTPGRLMDHLRRKTIRPDHVKTIVLDEADEMLNMGFREDIETVLEYLPQEHQTVLFSATM 188

Query: 431 IPRTLVLTSLGDID--ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               L +T     D    KI +K      I      + R D++    +++     K   +
Sbjct: 189 PKPILEITRKYQHDAINIKIVKKELTVANIDQYYYDVKRKDKIDVLTRLLDYYNPKLSLV 248

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N + +V+           S   +HG M  + ++ VM +F+NG   +LIAT
Sbjct: 249 F--------CNTKKMVDELAYELCGRGYSAEGLHGDMKQVQRDRVMKNFRNGKTDILIAT 300

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV D   +   +        +H++ GR GR                       
Sbjct: 301 DVAARGIDVDDVEAVFNYDLPQDDEYYVHRI-GRTGRAGRCGKAFSFVKGKEVYKLKDIQ 359

Query: 609 SVLK 612
              K
Sbjct: 360 RYCK 363


>gi|326201867|ref|ZP_08191737.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325987662|gb|EGD48488.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 481

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/364 (23%), Positives = 148/364 (40%), Gaps = 39/364 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           +  + F SPTK QE  I  +++      +   I++   GSGKT    + +   VE     
Sbjct: 18  ISMLNFKSPTKVQEKVIPAVIE------KKDIIVKSQTGSGKTAAFAVPICELVEWDENK 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  ++ V  I G  P  ++ K L++    + H+++G
Sbjct: 72  PQALVLTPTRELAIQVKEDIFNIGRFKRLKVSAIYGKSPFYNQEKELKQ----KTHVVVG 127

Query: 382 THALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I+           L++   DE    G  +++           ++ + +    
Sbjct: 128 TPGRIIDHIERNTFDTSNIKYLVIDEADEMLHMGFIEQI---------ETIVSSLSKERV 178

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP-QI 492
           T++L++   IDI  +  K   ++PI+  I   N   + + + +  +    K   +    I
Sbjct: 179 TVLLSATMPIDIETLCNKYM-KEPIRVEIEEQNTTTDRVHQERYDVERASKIKLLRDITI 237

Query: 493 EEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            E  +      N +  V+        F  S   IHG M   D+  VM+ FK G  + LIA
Sbjct: 238 VENPDSCIIFCNTKQKVDDVYDRLLLFKYSCEKIHGGMDQRDRLKVMNDFKRGYFRYLIA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ + S++I  +    G   +H++ GR GR       I       SK     
Sbjct: 298 TDVAARGIDIDNISLVINYDIPQDGETYVHRI-GRTGRIGRDGKAISFVTEDESKYLNDI 356

Query: 608 LSVL 611
              +
Sbjct: 357 NQYI 360


>gi|226312984|ref|YP_002772878.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226095932|dbj|BAH44374.1| probable ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 529

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 82/437 (18%), Positives = 168/437 (38%), Gaps = 53/437 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             +   I Q I       P+  Q + I  +L           I Q   G+GKT    I +
Sbjct: 7   FPLHKSILQAIHDMGFEEPSPIQAACIPKVLDG------GDLIGQAQTGTGKTAAFGIPL 60

Query: 315 AAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
              +      QA+++ P   LA Q    + + ++  ++    I G     H+ +AL +  
Sbjct: 61  VEKITPANRVQAIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRALRQ-- 118

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVL 424
                I++GT     D ++   L L  V        DE    G  + +           +
Sbjct: 119 --GVQIVVGTPGRVMDHLRRKTLKLDHVHTLVLDEADEMLDMGFIEDI---------ETI 167

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +       +TL+ ++    +I ++  +   ++P    +        +IE++   + +  K
Sbjct: 168 INHMPDERQTLLFSATMPPEIKRLATRYM-KQPQTIAVSREEVTAPLIEQVYYKVFDRNK 226

Query: 485 AYWICPQIEEKKE---SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
              +C  ++ +       F       + L E   S       +HG +S   ++ VM++F+
Sbjct: 227 VESLCRILDSEDVELGIIFCRTKRGVDELSEVLQSRGYLADGLHGDLSQAQRDKVMNAFR 286

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G+ + LIAT V   GIDV + S +I  +      + +H++ GR GR       + L  P
Sbjct: 287 EGSIEFLIATDVAARGIDVGNVSHVINYDIPQDSESYVHRI-GRTGRAGRKGIAMTLVTP 345

Query: 599 PLSKNSYTRLSVLKNTEDGF----LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
              +     + + K T+       + + E++ +RK+ ++         +  +      D+
Sbjct: 346 ---REVRQMMFIQKQTKAQVLSRNVPSLEEVAERKQEQL---------REQLTSLLESDA 393

Query: 655 LLEIARKDAKHILTQDP 671
           + ++ +K A  ++ Q P
Sbjct: 394 IADMYQKVADALVGQYP 410


>gi|254505608|ref|ZP_05117754.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
 gi|219551261|gb|EED28240.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
          Length = 647

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 90/441 (20%), Positives = 165/441 (37%), Gaps = 55/441 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SPT  Q +AI  +L           + +   G+GKT    + +   ++ G    QA+++A
Sbjct: 28  SPTPIQAAAIPHLLAGKD------ALGKAQTGTGKTAAFSLPLLNKLDLGQRKPQAIVLA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   +N   + V  I G      + +AL       AHI++GT    Q
Sbjct: 82  PTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRAL----KNGAHIVVGTPGRVQ 137

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQR--LKLTQKATAPHVLLMTAT--PIPRTL 435
           D I   +L L  V        DE    G        +     +   +L +AT  P+ +++
Sbjct: 138 DLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQRVLFSATMPPMLKSI 197

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           V   L D +   +  K      ++     +  +++     +++ +E   A  +  +    
Sbjct: 198 VERFLRDPETIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVFVRT--- 254

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                R   ER            + +HG +    +E  +D  K G   +L+AT V+  G+
Sbjct: 255 -----RQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGL 309

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   + +   +      + +H++ GR GR       ILL      +   T   V K++ 
Sbjct: 310 DVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSSM 368

Query: 616 DGFLIAEED------LKQRKEGEILGIKQ-------SGMPKFLIAQPELHDSLLEI---A 659
           +   +   D      L +    E+   K+       S + + L    EL  + L      
Sbjct: 369 EEIQLPHRDKVAESRLAKLGA-ELETEKEHKALEKFSELVEKLQESLELDAATLAAILLK 427

Query: 660 RKDAKH---ILTQDPDLTSVR 677
           R+  K     + +DP + ++ 
Sbjct: 428 RQQGKRPLFYIGEDPMIEAIE 448


>gi|168015786|ref|XP_001760431.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688445|gb|EDQ74822.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 675

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 145/384 (37%), Gaps = 46/384 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  +    +Q+         +     GSGKTL  LI     +E        G   
Sbjct: 177 SPTPIQAQSWPIAMQNRD------IVAIAKTGSGKTLGYLIPAFLHLERHRNNSRLGPSV 230

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  E   K+ ++++I    + G  P+  + + +ER     A I+I T  
Sbjct: 231 LVIAPTRELATQIQEECVKFGRSSRITSTCVYGGAPKGPQLRDIER----GADIVIATPG 286

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRT 434
              D ++  K        L+L   D     G + +++    +  +    L+ TAT     
Sbjct: 287 RLNDFLEVKKISLRQVSYLVLDEADRMLDMGFEPQIRKIVNEILSRRQTLMYTATWPKEV 346

Query: 435 L-----VLTSLGDIDISKITEKPAGRKPIKTV--IIPINRIDEVIERLKVVLSEGKKAYW 487
                 +L +   ++I    E  A +   + V  ++P  +    +E++      G K   
Sbjct: 347 RKIAGDLLINPVQVNIGNTDELSANKSITQHVEVVVPYEK-QRRLEQILRSQEPGSKIIV 405

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C        S  R       +L   F +  A IHG  S  +++ V+  F+ G   +L+A
Sbjct: 406 FC--------STKRMCDMLSRNLGRDFGA--AAIHGDKSQSERDFVLSQFRTGRTPILVA 455

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+ D   ++  +        +H++ GR GR          +     K +   
Sbjct: 456 TDVAARGLDIKDIRFVVNYDFPTGVEDYVHRI-GRTGRAGATGLAYTFFSEQDGKYAKEL 514

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEG 631
           + VL+          +D+  R  G
Sbjct: 515 IKVLEGANQKVPQELKDIASRGGG 538


>gi|320093934|ref|ZP_08025768.1| DNA helicase RecG [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979133|gb|EFW10642.1| DNA helicase RecG [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 251

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 96/236 (40%), Positives = 143/236 (60%), Gaps = 8/236 (3%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +   +PF+ T SQ +AI  I  D+++ + M R+LQGDVGSGKT+VAL A+A  V+ G Q 
Sbjct: 6   LEGALPFALTGSQRAAIGAIDADLARPSPMQRLLQGDVGSGKTVVALAALARVVDNGRQG 65

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            ++AP  +LA+QH+  I          + V ++TG+ P+A RR  LE +A     I++GT
Sbjct: 66  ALVAPTEVLAEQHFASITALLGPLGGAVGVRLLTGSTPEAARRAVLEEMASPGPLIVVGT 125

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTLVLTS 439
           HAL QDS+ +  L L ++DEQHRFGV QR  L          H L+MTATPIPRT+ +T 
Sbjct: 126 HALLQDSVGFADLALAVIDEQHRFGVAQRAALRAARADGRLVHELVMTATPIPRTIAMTV 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEGKKAYWICPQI 492
            GD+D +++   PAGR P+ T ++  +    I+ +  R +  +  G + Y +CP+I
Sbjct: 186 FGDLDETRMEGLPAGRAPVATHLVDASNGPWIERLWRRAREEVDSGGRVYVVCPRI 241


>gi|218462794|ref|ZP_03502885.1| ATP dependent RNA helicase protein [Rhizobium etli Kim 5]
          Length = 398

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 79/363 (21%), Positives = 142/363 (39%), Gaps = 42/363 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI   L+      R         G+GKT   ++ M + +E G       + +I
Sbjct: 25  PTPIQAGAIPFALE------RRDICGIAQTGTGKTASFVLPMLSLLEKGRARARMPRTLI 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  +KY +N ++ V ++ G +    + + LER     A ++I T    
Sbjct: 79  LEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER----GADVLICTPGRL 134

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--RT 434
            D  +  KL++  V     DE  R      +   ++           L  +AT  P  + 
Sbjct: 135 LDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSATMPPEIQK 194

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSEGKKAYWICP 490
           L    L + +  ++ +  +  K +    +  +  D     V+  L    +E K A   C 
Sbjct: 195 LADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQTELKNAIIFCN 254

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         + V + F SL  H   S+  +HG M    +  ++ SF++G  +LL+A+ V
Sbjct: 255 R--------KKDVADLFRSLERHG-FSVGALHGDMDQRSRTMMLQSFRDGNLQLLVASDV 305

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D S +   +        +H++ GR GR     +   L     +K       +
Sbjct: 306 AARGLDIPDVSHVFNFDVPIHSEDYVHRI-GRTGRAGRSGAAFTLVTKRDTKFVDAIEKL 364

Query: 611 LKN 613
           +  
Sbjct: 365 IGE 367


>gi|327279490|ref|XP_003224489.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Anolis
           carolinensis]
          Length = 600

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 90/432 (20%), Positives = 161/432 (37%), Gaps = 47/432 (10%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-- 269
           P+  K+F    P   R    E+   + +  +  K       +    E      ++  I  
Sbjct: 48  PKFEKNFYQEHPDVARRPMQEIEQYRGSKEITVKGHNCPKPVMNFYEANFPANVMEVIQR 107

Query: 270 -PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------- 319
             F+ PT  Q       L  +     M+ + Q   GSGKTL  L+     +         
Sbjct: 108 QNFTDPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHINHQPFLERG 161

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER       I 
Sbjct: 162 DGPICLVLAPTRELAQQVQQVAAEYGRACRLKSTCIYGGAPKGPQIRDLER----GVEIC 217

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTAT 429
           I T     D ++  K        L+L   D     G + +++    Q       L+ +AT
Sbjct: 218 IATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 277

Query: 430 PIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGK 483
                R L    L +     I   E  A      I  V   + + D++I  ++ ++SE +
Sbjct: 278 WPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKE 337

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  + +       R   +    +      ++ I HG  S  +++ V++ FK+G   
Sbjct: 338 NKTIVFVETK-------RRCDDLTRKMRRDGWPAMGI-HGDKSQQERDWVLNEFKHGKAP 389

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    + P   K 
Sbjct: 390 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTFFTPNNIKQ 448

Query: 604 SYTRLSVLKNTE 615
               +SVL+   
Sbjct: 449 VSDLISVLREAN 460


>gi|90424330|ref|YP_532700.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
 gi|90106344|gb|ABD88381.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
          Length = 503

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 72/357 (20%), Positives = 133/357 (37%), Gaps = 28/357 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q+ AI  +L       R   +     G+GKT   ++ M   +E G       + +
Sbjct: 30  TPTPIQDQAIPHVLA------RRDVLGIAQTGTGKTAAFVLPMLTLLEKGRARARMPRTL 83

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY    ++ V ++ G +    +   L R       ++I T   
Sbjct: 84  ILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDIKLTR----GVDVLIATPGR 139

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D  +   L+L  V E        R+           +        +TL  T+    +I
Sbjct: 140 LLDHTERGGLLLTGV-ELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPNEI 198

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKE------ 497
            +ITE      P+K  +         + + +V       +K   +   + + K+      
Sbjct: 199 RRITETFL-HNPVKIEVSKPASTAVTVTQSQVATGREPHEKRETLRRLLRDAKDLQNAII 257

Query: 498 -SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V       E    S+  +HG M    + + +D F+ G   +L+A+ V   G+D
Sbjct: 258 FCNRKREVALLAKSLEKHGFSVGALHGDMEQSARTAALDQFRKGELPILVASDVAARGLD 317

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + + S +I  +  H     +H++ GR GR     + I +  P  +K+      ++  
Sbjct: 318 IPEVSHVINFDVPHHPDDYVHRI-GRTGRAGRAGTAISIVCPSDTKSIAAIEKLIGQ 373


>gi|195439780|ref|XP_002067737.1| GK12550 [Drosophila willistoni]
 gi|194163822|gb|EDW78723.1| GK12550 [Drosophila willistoni]
          Length = 800

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 141/381 (37%), Gaps = 37/381 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           +     GSGKTL  ++     +          G  
Sbjct: 156 KPTAIQAQGWPIALSGRD------LVGVAQTGSGKTLAYILPAVVHINNQPRLERGDGPI 209

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  NTQ+    I G  P+  + + LER       I+I T 
Sbjct: 210 ALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQQARDLER----GVEIVIATP 265

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 266 GRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKE 325

Query: 433 -RTLVLTSLGDIDISKITEKP-AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
            R L    L +     I     +    I+ ++   +  +++++ + ++     ++     
Sbjct: 326 VRQLAEEFLNNYIQVNIGSLSLSANHNIRQIVDVCDESEKIVKLINLLTDISAESETKTI 385

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
              E K    + V E   ++      + AI HG  S  +++ V+ SF+NG   +L+AT V
Sbjct: 386 IFVETK----KRVDEITRNISRQGWRACAI-HGDKSQQERDFVLSSFRNGRHSILVATDV 440

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D   +I  +        +H++ GR GR     +   L+    +  +   + V
Sbjct: 441 AARGLDVDDVKFVINYDYPSNSEDYVHRI-GRTGRSNNTGTAYTLFTHSNANKANDLIQV 499

Query: 611 LKNTEDGFLIAEEDLKQRKEG 631
           L+           ++     G
Sbjct: 500 LREANQTINPKLMNMAMSGGG 520


>gi|312371167|gb|EFR19420.1| hypothetical protein AND_22552 [Anopheles darlingi]
          Length = 1161

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 149/387 (38%), Gaps = 45/387 (11%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           +LR + F  PT  Q  AI  I+           I     GSGKTL  ++ M   +     
Sbjct: 502 VLRKLGFEKPTPIQCQAIPAIMSGRD------LIGIAKTGSGKTLAFILPMFRHILDQPP 555

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  A+IM P   L  Q  + IKK++++  +    + G    + +   L+R     
Sbjct: 556 LEDGDGPIAIIMTPTRELCMQIGKDIKKFSKSLNLRTVCVYGGTGISEQIAELKR----G 611

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  +++DE  R           +          
Sbjct: 612 AEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNIR---- 667

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++     +  +  +   +KPI+  +   + + + +E+  VVL +  K + 
Sbjct: 668 --PDRQTVMFSATFPRQMEALARR-ILKKPIEVQVGGRSVVCKEVEQHVVVLEDEAKFFK 724

Query: 488 ICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +   +   +E        + +   +         + +   +HG +   D++S M+ FK G
Sbjct: 725 LLELLGLYQEQGSIIVFVDKQENADILLKDLMKASYACMSLHGGIDQFDRDSTMNDFKQG 784

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             KLLIAT+V   G+DV    +++  +  +     +H+  GR GR            P  
Sbjct: 785 RVKLLIATSVAARGLDVKQLILVVNYDCPNHYEDYVHR-CGRTGRAGNKGFAWTFLTPEQ 843

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            + +   +  L+ +        EDL+Q
Sbjct: 844 GRYAGDIIRALELSGG---TVPEDLRQ 867


>gi|226506900|ref|NP_001142117.1| hypothetical protein LOC100274281 [Zea mays]
 gi|194704910|gb|ACF86539.1| unknown [Zea mays]
 gi|194707190|gb|ACF87679.1| unknown [Zea mays]
          Length = 494

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 136/362 (37%), Gaps = 37/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L+          I   + GSGKTL  L+     V A        G  
Sbjct: 113 EPTPIQSQGWPMALRGRD------LIGIAETGSGKTLAYLLPAIVHVNAQPILSPGDGPI 166

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +   K+  +++I    I G +P+  + + L++       I+I T 
Sbjct: 167 VLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQK----GVEIVIATP 222

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D I+       ++  +++DE  R          +K  +         P  +TL  +
Sbjct: 223 GRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIR------PDRQTLYWS 276

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +    ++ ++           T+     + +  I +   +LSE +K   +   +E+  + 
Sbjct: 277 ATWPKEVEQLARNFLFDPYKVTIGSEDLKANHAIVQHVEILSESQKYNKLVNLLEDIMDG 336

Query: 498 ------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  + +   ++              IHG  S  +++ V+  FK+G   ++ AT V 
Sbjct: 337 SRILIFMDTKKGCDQTTRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVA 396

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D   +I  +        +H++ GR GR     +    +    ++ +   +++L
Sbjct: 397 ARGLDVKDVKYVINYDFPGSLEDYVHRI-GRTGRAGAKGTAYTFFTAANARFAKELINIL 455

Query: 612 KN 613
           + 
Sbjct: 456 EE 457


>gi|188587876|ref|YP_001920681.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498157|gb|ACD51293.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 480

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 144/378 (38%), Gaps = 44/378 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           + N+ + +P++ QE AI +IL++         +++   GSGKT    I +   +   E  
Sbjct: 18  IDNLGYKTPSEVQEKAIPEILRNKD------LVVKSQTGSGKTASFGIPLCEKIDWDENK 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++AP   LA Q  E I    +  +I    I G      + + L++    + HI++G
Sbjct: 72  PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ----KTHIVVG 127

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I    L        ++   DE    G  ++++   +      +         
Sbjct: 128 TPGRVLDHIDRGSLDVSKINYFVIDEADEMLNMGFIKQVEAIIRRIPKKRV--------- 178

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP-QI 492
           TL+ ++    +I  + +K    +PI   I   N   + +      +   +K   +    I
Sbjct: 179 TLLFSATIPDEIKNLCDKHMN-RPIDIAIKSQNLTSDNVSHYAYHVGYNQKLDLLNNILI 237

Query: 493 EEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            E  E        +  V+  +        S   IHG M   D+   M+ F+ G  ++L+A
Sbjct: 238 SEMPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   GID+   + +I  +      A +H++ GR GR       +        +     
Sbjct: 298 TDIASRGIDIEGITHVINYDIPVEKEAYVHRI-GRTGRAGAKGVALTFCKDSGDRYLNEI 356

Query: 608 LSVLKNTEDGFLIAEEDL 625
              +     GF +  +DL
Sbjct: 357 EEYI-----GFKLEVKDL 369


>gi|159903626|ref|YP_001550970.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888802|gb|ABX09016.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 604

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 134/367 (36%), Gaps = 39/367 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            PT  Q++A  +++           + Q   G+GKT    + +   ++      Q +++A
Sbjct: 74  DPTPIQKAAFPELMLGRD------LLGQAQTGTGKTAAFALPILERIKQDTRAPQVLVLA 127

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  + Y Q   ++ V  + G      +  AL R       I++GT     
Sbjct: 128 PTRELAMQVADSFRAYAQGRPEVQVLAVYGGSDFRAQINALRR----GVQIVVGTPGRVM 183

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D I+           L+L   DE  R G    ++            +   P  R ++  S
Sbjct: 184 DHIRQGTFIKTDLETLVLDEADEMLRMGFIDDIEWI----------LEQLPAKRQMIFFS 233

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                  +   K    +P +  I    +  ++I +  +V+    K   +   +E   +  
Sbjct: 234 ATMPSEIRRLSKQYLHEPAEITIKAQKKEAQLIRQRYIVIQNSFKLEALKRVLETTADEG 293

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +++  R +   E    ++A+++G +    +E  ++  + G   +L+AT V   
Sbjct: 294 VIIFARTKAITLRLSESLEALNHNVAVLNGDVPQTLRERTIERLRQGGIDILVATDVAAR 353

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV    ++I  +      A +H++ GR GR       IL   P            +  
Sbjct: 354 GLDVERIGLVINYDMPFDSEAYVHRI-GRTGRAGRTGEAILFVSPRERSFINNLERAVGQ 412

Query: 614 TEDGFLI 620
           + +   I
Sbjct: 413 SIEKMEI 419


>gi|218532241|ref|YP_002423057.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218524544|gb|ACK85129.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 519

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 126/346 (36%), Gaps = 42/346 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  +L       R   +     G+GKT    + M   +E G       + +
Sbjct: 23  EPTPIQAQAIPHVLA------RRDVLGIAQTGTGKTAAFTLPMLTMLETGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  ++Y  N ++ V +I G +  A +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTR----GTDVLIATPGR 132

Query: 386 FQDSIQYYKL-----ILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRT- 434
             D  +  KL      L+++DE  R      +   ++           L  +AT  P   
Sbjct: 133 LLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPEIE 192

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVII----PINRIDEVIERLKVVLSEGKKAYWIC 489
            L    L +    ++    +    I+  ++      +   +V+  L    SE +     C
Sbjct: 193 RLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIRSASELQNGIIFC 252

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +  V +          + A +HG M    + + +D F++G   LL+A+ 
Sbjct: 253 NR---------KRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLVASD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           V   G+D+   S +   +  H     +H++ GR GR         L
Sbjct: 304 VAARGLDIPAVSHVFNFDVPHHPEDYVHRI-GRTGRAGRSGQAFTL 348


>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase domain protein [Thermincola sp. JR]
 gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
          Length = 529

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 88/433 (20%), Positives = 154/433 (35%), Gaps = 48/433 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  Q  AI  +L           I Q   G+GKT    I +   +       QA+++ 
Sbjct: 27  EPTPIQAEAIPVLLNGHDV------IGQAQTGTGKTAAFGIPILEKLNPRYRAVQALVIT 80

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I K  +   +    + G      +  AL+R       +++GT     D
Sbjct: 81  PTRELAIQVAEEIMKLGKFKDVRTLAVYGGQSIDRQIGALKR----GVQVVVGTPGRLLD 136

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I            L+L   DE    G    ++   K T             +TL+ ++ 
Sbjct: 137 HINRGTLRLQHLKMLVLDEADEMLDMGFIDDIEAIIKETPE---------TRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
              +I ++  K   + P    +         IE++   + E  K   +C  +E       
Sbjct: 188 MPHEIQQLARKYL-KNPRLVAVSKDELTVPSIEQVYYEVREKTKLESLCRVLETIDVTLA 246

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+   +  E        +HG ++   +  VM  FKNG    L+AT V   G
Sbjct: 247 IIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQRNKVMRKFKNGQVDYLVATDVAARG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+ + S +I  +        +H++ GR GR       I    P   +       ++   
Sbjct: 307 LDIENVSHVINYDIPQDPEVYVHRI-GRTGRAGRSGKAITFIVPEEYRQLRLIEKII--- 362

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
             G  IA ++L      +I   +Q       +A   ++   L+I R   +  L  D +L 
Sbjct: 363 --GARIARKNLP--SIADIF-ERQKVQMIDKVAN-TINGGQLDIYRDIVQE-LAADYNLI 415

Query: 675 SVRGQSIRILLYL 687
            +   ++++ L L
Sbjct: 416 DIASAALKLALDL 428


>gi|108761880|ref|YP_632259.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
           1622]
 gi|108465760|gb|ABF90945.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
           1622]
          Length = 501

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 127/360 (35%), Gaps = 37/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +PT  Q+ AI   L           +     G+GKT    + +   + A   A       
Sbjct: 23  TPTPIQQKAIPHALAGRDV------LGVAQTGTGKTAAFALPILQRLSAKAPAGGARPVR 76

Query: 325 -VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA Q  +    Y +   +   +I G + Q  + + L         +++ T 
Sbjct: 77  CLVLTPTRELAGQVGDSFGTYGKGLPLRHAVIFGGVGQNPQVQTLRN----GVDVLVATP 132

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++        L + ++DE  R      +           ++    P  +TL  +
Sbjct: 133 GRLLDLMEQGFVSLRSLEVFVLDEADRMLDMGFIHDV------RRVIKALPPKRQTLFFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    DI  +  +     PI+  + P +   E + +    +   +K   +   ++E    
Sbjct: 187 ATLPPDIVDLA-RSILTDPIRVEVTPASSTAETVSQQVYFVEREQKRGLLTHLLKEGNIH 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +    R     E    S A IHG  S   +E  +D F++GT ++L+AT +  
Sbjct: 246 RALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGTLRVLVATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+   S ++  +  +     +H++ GR GR     + +                 ++
Sbjct: 306 RGIDIDGLSYVVNYDLPNVPEQYVHRI-GRTGRAGASGTAVSFCDAEERAYLRDIERTIR 364


>gi|21232073|ref|NP_637990.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|21113816|gb|AAM41914.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 642

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 92/450 (20%), Positives = 165/450 (36%), Gaps = 45/450 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q + I  +L           + Q   G+GKT    + + +  +      QA+++A
Sbjct: 31  TPSPIQAATIPALLAGRDV------LGQAQTGTGKTAAFALPVLSNADLNQVKPQALVLA 84

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY +      V  + G  P A +  AL+R      H+++GT     
Sbjct: 85  PTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR----GVHVVVGTPGRVI 140

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP--RTL 435
           D +        Q   L+L   DE  R G    ++  L +      V L +AT  P  R +
Sbjct: 141 DHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPPAIRRI 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E      I  +    
Sbjct: 201 AQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFART--- 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E      +    + A I+G M    +E  +   K+G   +L+AT V   G+
Sbjct: 258 -----KAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGL 312

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P             +   
Sbjct: 313 DVERVSHVLNYDIPYDTESYVHRI-GRTGRAGRNGDAILFVTPREKGMLRAIERATRQPI 371

Query: 616 DGFLIAEED--LKQRKEG------EILGIKQSGMPKFLIAQPELHDSL--LEIARKDAKH 665
           +   +   D     R         E L   Q  M + L+ + E  +++  ++IA   AK 
Sbjct: 372 EEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVPAIDIAAAMAKL 431

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           +    P L +   +  R      + N+   
Sbjct: 432 LQGNAPFLLTPPVRGAREDFAPRERNDRAD 461


>gi|254563310|ref|YP_003070405.1| RNA helicase [Methylobacterium extorquens DM4]
 gi|254270588|emb|CAX26591.1| RNA helicase [Methylobacterium extorquens DM4]
          Length = 517

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 126/346 (36%), Gaps = 42/346 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  +L       R   +     G+GKT    + M   +E G       + +
Sbjct: 23  EPTPIQAQAIPHVLA------RRDVLGIAQTGTGKTAAFTLPMLTMLETGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  ++Y  N ++ V +I G +  A +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTR----GTDVLIATPGR 132

Query: 386 FQDSIQYYKL-----ILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRT- 434
             D  +  KL      L+++DE  R      +   ++           L  +AT  P   
Sbjct: 133 LLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPEIE 192

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVII----PINRIDEVIERLKVVLSEGKKAYWIC 489
            L    L +    ++    +    I+  ++      +   +V+  L    SE +     C
Sbjct: 193 RLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIRSASELQNGIIFC 252

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +  V +          + A +HG M    + + +D F++G   LL+A+ 
Sbjct: 253 NR---------KRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLVASD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           V   G+D+   S +   +  H     +H++ GR GR         L
Sbjct: 304 VAARGLDIPAVSHVFNFDVPHHPEDYVHRI-GRTGRAGRSGQAFTL 348


>gi|237751153|ref|ZP_04581633.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879]
 gi|229373598|gb|EEO23989.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879]
          Length = 518

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 65/367 (17%), Positives = 138/367 (37%), Gaps = 40/367 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
           +P+  QE AI  IL+      R   I Q   G+GKT    + +  +++     +A+++ P
Sbjct: 42  TPSPIQEKAIPPILE------RRDVIAQAQTGTGKTAAFALPILHSLKNDSSIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + + K  +  +     + G      + + +E+    +  ++I T     D 
Sbjct: 96  TRELAMQISDEVFKLGKFLKTKTVCVYGGQSVKKQLELIEK----KPQVLIATPGRLLDH 151

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           ++  +L        +L   DE    G    ++   +    +          +TL+ ++  
Sbjct: 152 LKNERLKNFAPNVVVLDESDEMLDMGFIDDIEEIFQYIPNNA---------QTLLFSATM 202

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-- 499
              I ++ +K     P+   I   +  +  I +   +++E ++   +   I+ +  S   
Sbjct: 203 PARIKQLADK-ILYDPVHIKIQSSSTTNADIAQRYYIINENERNEALTRLIDTESPSKSI 261

Query: 500 ----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   +  NS  ++       +HG M    +   + +FK     +L+AT V   G+
Sbjct: 262 IFIRTKKEADEVNSYLQNKGYKSTALHGDMDQRMRRDSVQAFKGKEADILVATDVAARGL 321

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+ + S +   +      + +H++ GR GR       I L  P           +   T 
Sbjct: 322 DIRNVSHVFNYHIPLNIESYVHRI-GRTGRAGSKGVAITLATP---LEYKDLKKIQNETN 377

Query: 616 DGFLIAE 622
             F + E
Sbjct: 378 AKFELYE 384


>gi|153009579|ref|YP_001370794.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561467|gb|ABS14965.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 498

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 138/365 (37%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 38  APTPIQAGAIPPALE------RKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 91

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 92  ILEPTRELAAQVEENFTKYGVNHRLNVALLIGGVSFDEQERKLER----GADVLIATPGR 147

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRT- 434
             D  +  KL+L  V     DE  R      +   ++           L  +AT  P   
Sbjct: 148 LLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEIT 207

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVII-----PINRIDEVIERLKVVLSEGKKAYWI 488
            L    L      ++ +  +  K +   ++       ++   + + ++      K A   
Sbjct: 208 KLTEQFLHSPTRVEVAKASSTAKTVTQRLVKSSKKDWDKRAVLRDLVRAEGDTLKNAIIF 267

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         + V E F SL  H   +   +HG M    + +++ +FK G  +LL+A+
Sbjct: 268 CNR--------KKDVSELFRSLTRH-EFNAGALHGDMDQRARMTMLANFKEGKLQLLVAS 318

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S +   +        +H++ GR GR         +  P  +K      
Sbjct: 319 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRI-GRTGRAGRSGKAFTIVTPSDTKYLAAIE 377

Query: 609 SVLKN 613
           +++  
Sbjct: 378 NMIGE 382


>gi|297797303|ref|XP_002866536.1| hypothetical protein ARALYDRAFT_496494 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312371|gb|EFH42795.1| hypothetical protein ARALYDRAFT_496494 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 588

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 132/369 (35%), Gaps = 38/369 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------ 318
           +  + F  PT  Q       L+          I   + GSGKTL  L+     V      
Sbjct: 177 IAKLGFTEPTPIQAQGWPMALKGRD------LIGIAETGSGKTLAYLLPALVHVSAQPRL 230

Query: 319 --EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
             + G   +I+AP   LA Q  E  +K+   + +    I G  P+  + + L R      
Sbjct: 231 GQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRR----GV 286

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLM 426
            I+I T     D ++           L+L   D     G + +++    Q       LL 
Sbjct: 287 EIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLW 346

Query: 427 TATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +AT       L    L D   + I             +I I    E   RL  +L +   
Sbjct: 347 SATWPREVESLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMD 406

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              I   +E K     R   +    L      ++AI HG  +  +++ V+  FK+G   +
Sbjct: 407 GSKILIFVETK-----RGCDQVTRQLRMDGWPALAI-HGDKTQPERDRVLAEFKSGRSPI 460

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           + AT V   G+DV D   ++  +  +     +H++ GR GR          +    +K +
Sbjct: 461 MTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRI-GRTGRAGAKGMAFTFFTHDNAKFA 519

Query: 605 YTRLSVLKN 613
              + +L+ 
Sbjct: 520 RELIKILQE 528


>gi|295101481|emb|CBK99026.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           L2-6]
          Length = 395

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 146/374 (39%), Gaps = 36/374 (9%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   K +  + F+  T+ QE  I  +L           I +   G+GKT    I +A  
Sbjct: 9   SEAIHKAVERMGFAEMTEVQEKTIPVMLAGRDV------IAKAPTGTGKTCAFGIPVAEH 62

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAH 373
           ++      QAVI+AP   LAQQ  E +   T     + V  + G      + K L     
Sbjct: 63  IDPALKAPQAVILAPTRELAQQIAEELTGLTYFMPEVQVVCVYGGANMEKQAKRLAE--- 119

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHV 423
               I++ T     D  +++ + L  V        DE    G  + +K           +
Sbjct: 120 -GCQIVVATPGRLMDHYKHHNIDLDHVTQVVLDEADEMLNMGFYKDVKHIIGLMKARKSL 178

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            + +AT     + +  +   D  +IT +P    +  I   ++  +  +++ +  ++++ E
Sbjct: 179 SMFSATISREVMDIGWMYQKDAEEITVQPKEESQPKITQYMLETSGRNKLSDLAQIIIGE 238

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           G K   +          + +       +       S+  +HG +S  ++  +M +F++G 
Sbjct: 239 GYKRVMVF--------CDTKFNTAALANQLARLGFSVDCLHGDLSQNERNRIMQNFRDGK 290

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   GIDV D   +I  +         H++ GR GR ++     L Y P   
Sbjct: 291 LNVLVATDVAARGIDVSDVDAVINYDVPGDNEHYTHRI-GRTGRAKKEGVSYLFYVPEEK 349

Query: 602 KNSYTRLSVLKNTE 615
           K     L + +NT+
Sbjct: 350 KRVQELLRLTRNTD 363


>gi|309798695|ref|ZP_07692960.1| ATP-dependent DNA helicase RecG [Streptococcus infantis SK1302]
 gi|308117638|gb|EFO55049.1| ATP-dependent DNA helicase RecG [Streptococcus infantis SK1302]
          Length = 234

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 95/243 (39%), Gaps = 19/243 (7%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +   +  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNHLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGVSQAGLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQ 246
           E I + LL K    S  +A   +H P   KD      A  R+ ++EL   Q+ L  ++ +
Sbjct: 169 ENIPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFEELFYFQMQLQTLKSE 225

Query: 247 FKK 249
            + 
Sbjct: 226 IRF 228


>gi|157817897|ref|NP_001100529.1| ATP-dependent RNA helicase DDX42 [Rattus norvegicus]
 gi|149054552|gb|EDM06369.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (predicted) [Rattus
           norvegicus]
          Length = 929

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 200 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 252

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 306

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 367 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 423 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 472

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 473 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 532

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 533 DQSERNKVILDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 591

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 636


>gi|160944592|ref|ZP_02091819.1| hypothetical protein FAEPRAM212_02105 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443776|gb|EDP20780.1| hypothetical protein FAEPRAM212_02105 [Faecalibacterium prausnitzii
           M21/2]
          Length = 435

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 144/374 (38%), Gaps = 36/374 (9%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   K +  + F+  T+ QE  I  +L           I +   G+GKT    I +   
Sbjct: 49  SEAIHKAVERMGFAEMTEIQEKTIPLMLAGHDV------IAKAPTGTGKTCAFGIPVVEH 102

Query: 318 VEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAH 373
           ++      QAVIMAP   LAQQ  E +   T     + V  + G      + K L     
Sbjct: 103 IQPENKYPQAVIMAPTRELAQQIAEELTNLTYFMPEVQVACVYGGANMEKQAKRLAE--- 159

Query: 374 GQAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFG-VQQRLKLTQKATAPHVL 424
               I++ T     D  +++        +++L   DE    G  +    + +   A   L
Sbjct: 160 -GCQIVVATPGRLMDHYKHHSIDISHVTQIVLDEADEMLNMGFYKDVRHIIEMMKARKAL 218

Query: 425 LMTATPIPRTLV---LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            M +  I R ++        + +   +  +   +  I   ++  +  +++ +  ++++ E
Sbjct: 219 SMFSATISREVMDIGWLYQHNAEEITVQPREESQPKITQYMLETSGRNKLSDLAQIIIGE 278

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           G K   +          + +       +       S+  +HG +S  ++  +M +F++G 
Sbjct: 279 GYKRVMVF--------CDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQAFRDGK 330

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   GIDV D   +I  +         H++ GR GR ++     L Y P   
Sbjct: 331 LAILVATDVAARGIDVSDVDAVINYDVPSENEHYTHRI-GRTGRAKKEGVSYLFYVPEEK 389

Query: 602 KNSYTRLSVLKNTE 615
           K     L + +NT+
Sbjct: 390 KRVQELLRLTRNTD 403


>gi|194333556|ref|YP_002015416.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           aestuarii DSM 271]
 gi|194311374|gb|ACF45769.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii
           DSM 271]
          Length = 607

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 76/377 (20%), Positives = 140/377 (37%), Gaps = 36/377 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + +  PT  Q   I  ILQ          + Q   G+GKT    + + + ++     
Sbjct: 46  LDKVGYENPTPIQLQTIPYILQGRDV------LGQAQTGTGKTAAFALPILSRIDCDKNY 99

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  E  ++Y         + I G    A + K L+R      H+++
Sbjct: 100 PQALVLTPTRELAIQVAEAFQRYAACMPDFHVLPIYGGQDYAGQLKRLKR----GVHVVV 155

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATP 430
           GT     D I+         + L+L   DE  R G    ++    Q   +  V L +AT 
Sbjct: 156 GTPGRVIDHIKRSSLKLDKLHTLVLDEADEMLRMGFVDDVEWILEQTPASRQVALFSATM 215

Query: 431 IPRTLVLTSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               L +      D ++IT   K +    I    + +    ++    +++ +E      I
Sbjct: 216 PSVILRIARKHLSDPAEITIKSKSSTVDAITQRFLTVGAHHKLEALTRILEAEPFDGVII 275

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +         R+  +  +        + A + G M    +E  +D  KNG   +++AT
Sbjct: 276 FVRT--------RTATQDLSEKLRARGYAAAALSGEMVQHQREKTIDQLKNGKLNIIVAT 327

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   + +I  +      + +H++ GR GR       IL           T  
Sbjct: 328 DVAARGLDVERVTHVINYDIPSDTESYVHRI-GRTGRAGRSGDAILFVTSREMSMLRTIE 386

Query: 609 SVLKNTEDGFLIAEEDL 625
             ++ + D   +   ++
Sbjct: 387 RAVRRSIDRMELPSAEM 403


>gi|241618030|ref|XP_002408280.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215502947|gb|EEC12441.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 1025

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 76/408 (18%), Positives = 156/408 (38%), Gaps = 44/408 (10%)

Query: 231 DELLAGQIALLLMRKQFKKEI---GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
            EL   ++  + +R +   +         V  K+ + + ++    PT  Q  AI  ++  
Sbjct: 327 VELWRAEMEGIKVRGKGCPKPIRNWAQCGVSKKVMEVLKKHGFEKPTPIQAQAIPAVMSG 386

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYE 339
                    I     GSGKTL  L+ M   +        + G  AVIM P   LA Q  +
Sbjct: 387 RD------LIGIAKTGSGKTLAFLLPMFRHILDQPPLEDDDGPIAVIMTPTRELAMQITK 440

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------Q 391
             KK+T++  + V  + G    + +   L+R     A II+ T     D +         
Sbjct: 441 DCKKFTKSLSLRVVCVYGGTGISEQIADLKR----GAEIIVCTPGRMIDMLAANNGRVTN 496

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
           + +   V++DE  R                  ++ +  P  +T++ ++     +  +  +
Sbjct: 497 FRRTTYVVLDEADRMFDMGFEPQVM------RIVDSVRPDRQTVMFSATFPRQMEALARR 550

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI----EEKKESNFRSVVERF 507
               KPI+ ++   + + + +E+  V++++  K + +   +    ++     F    E  
Sbjct: 551 -ILMKPIEILVGGRSVVCKEVEQHIVIINDEDKFFKLLELLGLYQDKGSAIVFVDKQEHA 609

Query: 508 NSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           + L +       +   +HG +   D++S +  FK G   +LIAT+V   G+DV    +++
Sbjct: 610 DVLLKDLMKASHNAMALHGGIDQFDRDSTIVDFKAGKVGVLIATSVAARGLDVKHLILVV 669

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             +  +     +H+  GR GR                + +      L+
Sbjct: 670 NYDCPNHYEDYVHR-CGRTGRAGNKGYAYTFITDDQGRYAADLSKALE 716


>gi|124430723|ref|NP_001037582.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
 gi|95102742|gb|ABF51312.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
          Length = 539

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 138/372 (37%), Gaps = 49/372 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q          MS KN    +     GSGKTL  ++     +          G  
Sbjct: 129 EPTPIQAQGWPIA---MSGKN---LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 182

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +    +   + +    + G  P+  + + LER       I+I T 
Sbjct: 183 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLER----GVEIVIATP 238

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D ++           L+L   D     G + +++           +    P  +TL
Sbjct: 239 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKI---------IEQIRPDRQTL 289

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           + ++    ++ K+ E   G      +    +   + I ++++  +    +  K   +  +
Sbjct: 290 MWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQ-EHEKENKLNVLLQE 348

Query: 492 IEEKKES--------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           I + +E           +   E  +     +      +HG  +  +++ V+  FK G   
Sbjct: 349 IGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRAS 408

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+DV     +I  +  +     +H++ GR GR +   +    + P  S+ 
Sbjct: 409 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRI-GRTGRSKSKGTSYAFFTPSNSRQ 467

Query: 604 SYTRLSVLKNTE 615
           +   +SVL+   
Sbjct: 468 AKDLVSVLQEAN 479


>gi|251778083|ref|ZP_04821003.1| cold-shock deAd box protein a [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082398|gb|EES48288.1| cold-shock deAd box protein a [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 367

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 83/366 (22%), Positives = 135/366 (36%), Gaps = 37/366 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  QE +I  IL           I +   G+GKTL  L+ +   +     G Q +I++
Sbjct: 23  TPTAIQEESIPKILSGKDV------IGEAKTGTGKTLAFLLPIFQNISPDTNGTQVLILS 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E  KK   N  I +    G      + K L+       H++I T     D
Sbjct: 77  PTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLKKLKH----NVHLVIATPGRLLD 132

Query: 389 SIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            I        KL  +++DE  +        L         ++  A+   +TL  ++  D 
Sbjct: 133 HIDRKTIDLSKLKTIVIDEADQM------LLMGFKNDIEKIMKVASKKHQTLCFSATMDS 186

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---KESNF 500
            + K+  +         +  P   +D+ I++  V  ++  K   +C  ++E        F
Sbjct: 187 QVKKLAYRYMIDPLFIDIKSPTIAVDK-IKQQVVETTDRWKQDSLCATLQEDNPFMAIIF 245

Query: 501 RSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                R + L             IH  +    +E +M SF+N   + LIAT V   GID+
Sbjct: 246 CRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNADIQYLIATDVAARGIDI 305

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              S I   +      + +H++ GR GR  E     +   P  S            T+ G
Sbjct: 306 SGVSHIYNYDTPETPESYIHRI-GRTGRAGEDGYTCMFVAPKDSNLLNAI-----ETKLG 359

Query: 618 FLIAEE 623
           F I   
Sbjct: 360 FTIPRR 365


>gi|240140800|ref|YP_002965280.1| RNA helicase [Methylobacterium extorquens AM1]
 gi|240010777|gb|ACS42003.1| RNA helicase [Methylobacterium extorquens AM1]
          Length = 519

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 126/346 (36%), Gaps = 42/346 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  +L       R   +     G+GKT    + M   +E G       + +
Sbjct: 23  EPTPIQAQAIPHVLA------RRDVLGIAQTGTGKTAAFTLPMLTMLETGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  ++Y  N ++ V +I G +  A +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTR----GTDVLIATPGR 132

Query: 386 FQDSIQYYKL-----ILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRT- 434
             D  +  KL      L+++DE  R      +   ++           L  +AT  P   
Sbjct: 133 LLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPEIE 192

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVII----PINRIDEVIERLKVVLSEGKKAYWIC 489
            L    L +    ++    +    I+  ++      +   +V+  L    SE +     C
Sbjct: 193 RLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIRSASELQNGIIFC 252

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +  V +          + A +HG M    + + +D F++G   LL+A+ 
Sbjct: 253 NR---------KRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLVASD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           V   G+D+   S +   +  H     +H++ GR GR         L
Sbjct: 304 VAARGLDIPAVSHVFNFDVPHHPEDYVHRI-GRTGRAGRSGQAFTL 348


>gi|163853383|ref|YP_001641426.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163664988|gb|ABY32355.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
          Length = 519

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 126/346 (36%), Gaps = 42/346 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  +L       R   +     G+GKT    + M   +E G       + +
Sbjct: 23  EPTPIQAQAIPHVLA------RRDVLGIAQTGTGKTAAFTLPMLTMLETGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  ++Y  N ++ V +I G +  A +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTR----GTDVLIATPGR 132

Query: 386 FQDSIQYYKL-----ILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRT- 434
             D  +  KL      L+++DE  R      +   ++           L  +AT  P   
Sbjct: 133 LLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPEIE 192

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVII----PINRIDEVIERLKVVLSEGKKAYWIC 489
            L    L +    ++    +    I+  ++      +   +V+  L    SE +     C
Sbjct: 193 RLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIRSASELQNGIIFC 252

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +  V +          + A +HG M    + + +D F++G   LL+A+ 
Sbjct: 253 NR---------KRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLVASD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           V   G+D+   S +   +  H     +H++ GR GR         L
Sbjct: 304 VAARGLDIPAVSHVFNFDVPHHPEDYVHRI-GRTGRAGRSGQAFTL 348


>gi|39939200|ref|NP_950966.1| superfamily II DNA/RNA helicase [Onion yellows phytoplasma OY-M]
 gi|39722309|dbj|BAD04799.1| superfamily II DNA and RNA helicase [Onion yellows phytoplasma
           OY-M]
          Length = 552

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 84/358 (23%), Positives = 141/358 (39%), Gaps = 39/358 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  Q   I +I++          I Q   G+GKT    I +   +E      Q++I+ P 
Sbjct: 27  TPIQALVIPEIIKGHDV------IGQAQTGTGKTFAFGIPIIEKIEPKIQKTQSLILCPT 80

Query: 331 GILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             L  Q YE +KK  +  Q I + ++ G      + +ALE     + H+II T     D 
Sbjct: 81  RELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQFRALEA----KPHLIIATPGRAIDH 136

Query: 390 IQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           ++  K        L L   DE  + G Q+ L           +L       +T++ ++  
Sbjct: 137 LERGKIDLSALKILTLDEADEMLKMGFQEAL---------ETILKKIPEERQTVLFSATL 187

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--- 498
              I KI  K      I  V +  N     IE+   ++ E  KA  +   ++ KK+    
Sbjct: 188 PPFIKKIASKYQKDTKILQVPVK-NIAVNAIEQNYFLVKEVDKAKLLVRLLDLKKDYSAI 246

Query: 499 ---NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +  V+   +  +        +HG +    ++ VM++F+ G  K+LIAT V   G+
Sbjct: 247 LFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAARGL 306

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           D+ D  ++I  +  H     +H++ GR GR  +      L  P            LK 
Sbjct: 307 DISDIKMVINYDLPHEDEVYVHRI-GRTGRAGKKGLAYSLISPRKVSQLKKLEYYLKE 363


>gi|307946857|ref|ZP_07662192.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
 gi|307770521|gb|EFO29747.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
          Length = 471

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 94/439 (21%), Positives = 163/439 (37%), Gaps = 62/439 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  +L+      R   +     G+GKT    + M   +E G       + +
Sbjct: 23  EPTAIQAGAIPHVLE------RRDVLGIAQTGTGKTASFTLPMLTLLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  +KY  N ++ V ++ G +    + K L+R       ++I T   
Sbjct: 77  ILEPTRELAAQVQENFEKYGTNHKLNVALLIGGVSFGEQDKKLDR----GTDVLIATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--R 433
             D  +  KL+L     +++DE  R      +   ++           L  +AT  P  +
Sbjct: 133 LLDHFERGKLLLQGVEVLVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEIQ 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG----KKAYWIC 489
            L  T L +    ++    +  + I   +      D     +   L EG      A   C
Sbjct: 193 RLTETFLQNPARVEVARTSSTSENISHYLRAAEGKDYEKRAVLRELLEGAEDLNNAIVFC 252

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         R +   F SL  H   S+  +HG M    + +++D+FK GT KLLIA+ 
Sbjct: 253 NR--------KRDISTLFRSLERHGY-SVGSLHGDMDQRTRMTMLDNFKKGTIKLLIASD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ + S +   +        +H++ GR GR         L      K   +   
Sbjct: 304 VAARGLDIPEVSHVFNYDVPSHAEDYVHRI-GRTGRAGRTGVAYTLVSGSDQKYLESIEK 362

Query: 610 VLKNTEDG------FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
           ++    +       F  A +  K RK G+               Q   +D+  + A+ +A
Sbjct: 363 LIAQDIEWLGDPVDFEAAHQARKGRKRGK--------------TQKPTNDNTAQPAQAEA 408

Query: 664 KHILTQDPDLTSVRGQSIR 682
           +     D   +  R ++ R
Sbjct: 409 QKFEVADDVNSGERKKNAR 427


>gi|229015638|ref|ZP_04172628.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
 gi|229021830|ref|ZP_04178406.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
 gi|228739470|gb|EEL89890.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
 gi|228745658|gb|EEL95670.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
          Length = 530

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 159/433 (36%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTRKEAV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G  ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMP-KFLIAQPELHDSLLEI-----ARKDA 663
            K   D       D     +  ++  K QS +    L     + + +LE          A
Sbjct: 359 TKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|251796764|ref|YP_003011495.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247544390|gb|ACT01409.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 477

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 145/385 (37%), Gaps = 40/385 (10%)

Query: 252 GIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
                   K     L ++ F +PT+ Q   I   L+      +   +++   GSGKT   
Sbjct: 1   MTVFKELSKEITTALSSLGFDTPTEVQAKVIPIALE------KRDLVVKSQTGSGKTAAY 54

Query: 311 LIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            I +   VE      QA+I+ P   LA Q  E I    +  +I    + G  P   +R  
Sbjct: 55  GIPLCELVEWNENKPQALILTPTRELAVQVTEDITNIGRFKRIKATALYGKSPFHIQRAE 114

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILV--------IVDEQHRFGV-QQRLKLTQKA 418
           L++    + H+++GT     D I+   L L           DE    G  +Q   + Q  
Sbjct: 115 LKQ----RTHMVVGTPGRVLDHIERGTLALDKLAYLVIDEADEMLNMGFIEQVQSIIQAL 170

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
               V ++ +   P  +   S   +D     +I         I+  +I +   D++    
Sbjct: 171 PKGRVTMLFSATFPEDVAKLSRRYMDSPAQIEIQASGLTTATIEHSLIEVKEADKLALLQ 230

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            V++ E   +  I  + +E  +  FRS+ E               IHG +   ++  VM+
Sbjct: 231 DVLVVENPDSCIIFCRTQENVDKLFRSMAE--------LDYPCDRIHGGLEQEERFEVMN 282

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +F+ G  + LIAT V   GID+ + + +I  +      + +H+  GR GR  +    I  
Sbjct: 283 AFRRGQFRYLIATDVAARGIDITNITHVINYDIPLEKESYVHR-TGRTGRAGKNGKAITF 341

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLI 620
             P   K        +     GF I
Sbjct: 342 LAPNDGKRLAEIEDYI-----GFSI 361


>gi|156549439|ref|XP_001603249.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 795

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 78/398 (19%), Positives = 140/398 (35%), Gaps = 46/398 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              +  + + I ++    PT  Q  +I   L           I     GSGKT   +  M
Sbjct: 260 FGFDDSLIKSIRKHEYTQPTPIQAQSIPVALSGRD------LIGIAKTGSGKTAAFVWPM 313

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   +I+AP   L+QQ Y   KK+ +   I V    G   +  + K
Sbjct: 314 LVHIMDQKELDSGDGPIGLILAPTRELSQQIYHEAKKFGKVYNIRVCCCYGGGSKWEQSK 373

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKA 418
           ALE      A I++ T     D ++           L+L   D     G + +++     
Sbjct: 374 ALES----GAEIVVATPGRIIDLVKMKATNLSRVTFLVLDEADRMFDMGFEPQVRSICNH 429

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                      P  +TL+ ++     I K+  + A   PI+ V   +   +  + +  +V
Sbjct: 430 VR---------PDRQTLLFSATFKKRIEKLA-RDALTDPIRIVQGDVGEANTDVTQHVIV 479

Query: 479 LSEGK--KAYWICPQIEEK-------KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             +    K  W+   I E             +   E   +  +     + ++HG M  ++
Sbjct: 480 FYKNPTGKWTWLNQNIVEYLSSGSLLIFVTKKLNAEELANNLKLKEYEVLLLHGDMDQVE 539

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +  V+ SFK  T  +L+AT V   G+D+     +I  +         H++ GR GR  E 
Sbjct: 540 RNKVITSFKKKTVSILVATDVAARGLDIPHIRTVINYDVARDIDTHTHRI-GRTGRAGEK 598

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
            +   L      + +   +  L+        +  DL  
Sbjct: 599 GTAYTLVTEKDKEFAGHLVRNLEGANQEVPKSLMDLAL 636


>gi|42779348|ref|NP_976595.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|206977074|ref|ZP_03237974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217957807|ref|YP_002336351.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|222094007|ref|YP_002528058.1| dead/deah box helicase [Bacillus cereus Q1]
 gi|229137077|ref|ZP_04265701.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST26]
 gi|229194624|ref|ZP_04321421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
 gi|81700027|sp|Q73EU1|CSHA_BACC1 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|42735263|gb|AAS39203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
 gi|206744723|gb|EDZ56130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217064501|gb|ACJ78751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|221238056|gb|ACM10766.1| DEAD/DEAH box helicase [Bacillus cereus Q1]
 gi|228588845|gb|EEK46866.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
 gi|228646384|gb|EEL02594.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST26]
 gi|324324246|gb|ADY19506.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 525

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 85/433 (19%), Positives = 161/433 (37%), Gaps = 42/433 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   T  Q   I   LQ          I Q   G+GKT    + +   V+      
Sbjct: 18  ESMGFEEATPIQAETIPHALQGKD------IIGQAQTGTGKTAAFGLPLLDKVDTHKESV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + K  ++ ++ +  I G      + +AL++      HII+GT
Sbjct: 72  QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK----HPHIIVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L        +L   DE    G  + +   LT        LL +AT P 
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    + +    K+  K      I+   + +    +     +++  +  +   +  
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +        +   IHG ++   + SV+  FK G+ ++L+AT V
Sbjct: 248 RT--------KRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +    +L   P  S         
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGIAMLFVTPRESGQLKNIERT 358

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIK-QSGMPKFLIAQPEL-HDSLLEI-----ARKDA 663
            K   D       D     +  ++  K Q+ +    +A  +   + +LE          A
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQNTIENENLAYYKRIAEEMLEENDSVTVVAAA 418

Query: 664 KHILTQDPDLTSV 676
             ++T++PD T +
Sbjct: 419 LKMMTKEPDTTPI 431


>gi|170754257|ref|YP_001782408.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str.
           Okra]
 gi|169119469|gb|ACA43305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum B1 str. Okra]
          Length = 524

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 74/367 (20%), Positives = 150/367 (40%), Gaps = 38/367 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----E 319
           ++++ F  P+  QE +I  +L+          I Q   G+GKTL     + +A+     +
Sbjct: 19  IQHMGFETPSAIQEKSIPVVLEG------ADVIAQAQTGTGKTLAFGAPVISALCDNEKK 72

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G +A+++ P   LA Q  + +K+ ++ ++  V  + G      + K ++        I+
Sbjct: 73  KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS----GVDIV 128

Query: 380 IGTHALFQDSIQYYKLILVIVD--------EQHRFGVQQRLKLTQKAT--APHVLLMTAT 429
           +GT     D I    L L  +D        E    G  + ++   ++T      +L +AT
Sbjct: 129 VGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTMLFSAT 188

Query: 430 ---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
              PI +  +     D++   I +K      I      +   D++    +++ SE  ++ 
Sbjct: 189 MPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRIIDSEEPESA 248

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            I  +         +  V+      +    ++  +HG MS   + + +  FK  T   L+
Sbjct: 249 IIFCRT--------KRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   GIDV + S +I  +      + +H++ GR GR ++  +   L  P    +   
Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRI-GRTGRADKEGTAYSLVTPREVSSIRQ 359

Query: 607 RLSVLKN 613
              ++K+
Sbjct: 360 IERIIKS 366


>gi|195127173|ref|XP_002008043.1| GI12051 [Drosophila mojavensis]
 gi|193919652|gb|EDW18519.1| GI12051 [Drosophila mojavensis]
          Length = 797

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 69/395 (17%), Positives = 140/395 (35%), Gaps = 44/395 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              + ++ + + +     PT  Q  A+   L           I     GSGKT   +  +
Sbjct: 280 FGFDDQLLKAVRKAEYTQPTPIQAQAVPAALSGRD------IIGIAKTGSGKTAAFIWPL 333

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   +I+AP   L+ Q Y   KK+ +   I V    G   +  + K
Sbjct: 334 LTHLMDQRELRAGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSK 393

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAP 421
           ALE+       I++ T     D ++       ++  +++DE  R          +     
Sbjct: 394 ALEQGCE----IVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNH 449

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                   P  +TL+ ++     I ++  +     P++ V   +N  ++ I +   V   
Sbjct: 450 VR------PDRQTLLFSATFKKRIERLA-RDILTDPVRIVQGDLNEANQDITQHVYVFPN 502

Query: 482 GKKAY--WICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
             + +   +C  ++   E         ++  E   +       +  ++HG M   D+  V
Sbjct: 503 PLQKWNWLLCHLVKFLSEGAVLVFVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKV 562

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  FK   C +L+AT V   G+D+     ++  +         H++ GR GR  E  +  
Sbjct: 563 ITQFKRKECDILVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRI-GRTGRAGEKGNAY 621

Query: 594 LLYHPPLSKNSYTRLSVLKNT-----EDGFLIAEE 623
            L      + +   +  L+       +D   +A +
Sbjct: 622 TLVTDKDKEFAGHLVRNLEGADQTVPDDLMELAMK 656


>gi|329889383|ref|ZP_08267726.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
 gi|328844684|gb|EGF94248.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
          Length = 490

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 76/360 (21%), Positives = 139/360 (38%), Gaps = 38/360 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVIM 327
           T  QE AI   L           +     G+GKT    + M   + +G       +AV++
Sbjct: 26  TPIQEQAIPVALAGRDV------LGIAQTGTGKTAAFTLPMVDRLASGRARARMPRAVVL 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA Q  E   KY + T++   ++ G +    +  AL +       ++I T     
Sbjct: 80  APTRELADQVAESFAKYAKGTRLNWVLLIGGVSMGDQIAALNK----GVDVLIATPGRLL 135

Query: 388 DSIQYYK-----LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLG 441
           D     K     + L++VDE  R      +   ++       +   TP  R TL  ++  
Sbjct: 136 DLFDRGKMLLTGVELMVVDEADRMLDMGFIPDIER-------IFKLTPPRRQTLFFSATM 188

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA--YWICPQIEEKKE-- 497
             +I+++T++         V  P    D + + +  + S   KA    +   +E      
Sbjct: 189 PPEITRLTQQFLKDPTRIEVARPATTADTITQHITRLPSSDPKAKRTALRALVERGDVQN 248

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N +S V+      +    + A IHG +    +   +  F++G  KLL+A+ V   
Sbjct: 249 GIVFCNRKSEVDIVAKSLQVHGFNAAPIHGDLDQSLRMKTLSDFRSGELKLLVASDVAAR 308

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   S +   +  H     +H++ GR GR   +    ++  P   K+    L ++K 
Sbjct: 309 GLDIPAVSHVFNYDVPHHADDYVHRI-GRTGRAGRLGEAFMIVTPADDKSLDKVLKLIKK 367


>gi|89097884|ref|ZP_01170771.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89087386|gb|EAR66500.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 485

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 127/344 (36%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAP 329
            PT  Q  AI   L           I Q   G+GKT    I +   ++   G Q +++AP
Sbjct: 24  EPTPIQAQAIPIGLSGKD------MIGQAQTGTGKTTAFGIPLLEKIDINEGIQGLVLAP 77

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E + +  Q   +    I G    + + +AL++      HII  T     D 
Sbjct: 78  TRELAVQVAEELNRIGQVKGVRTLPIYGGQDISRQIRALKKDR--GPHIIAATPGRLIDH 135

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           I+   +        +L   DE    G  + ++                   +TL+ ++  
Sbjct: 136 IERKTIRLNKIKLAVLDEADEMLNMGFIEDIERILSEVPEQ---------RQTLLFSATM 186

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---- 497
              I  + E+    +P    I       + IE+  + + E +K   +C  ++ +      
Sbjct: 187 PRRIQSLAERFMT-EPEMVQIKAKELTVKNIEQHYMEVHEKQKFDVLCSLLDIQSPELAI 245

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 + V E    L +   S+  I HG +    ++ V+  FK  T  +++AT V   G
Sbjct: 246 VFGRTKKRVDEVVEGLIKRGYSAEGI-HGDVPQNKRDQVIRRFKEQTIDIMVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +D+   S +   +      + +H++ GR GR  +    +    P
Sbjct: 305 LDISGVSHVYNFDIPQDPESYVHRI-GRTGRAGKKGLAVTFVSP 347


>gi|152981099|ref|YP_001355159.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281176|gb|ABR89586.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 778

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 90/462 (19%), Positives = 164/462 (35%), Gaps = 55/462 (11%)

Query: 251 IGIPINVEGKIAQKILR---NIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
              P+  + K+++ +LR    + +  P+  Q + I  +L +         + Q   G+GK
Sbjct: 4   PSFPLFADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDV------LGQAQTGTGK 57

Query: 307 TLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQA 362
           T    + + A ++      QA+++AP   LA Q  E  ++Y        V  I G     
Sbjct: 58  TASFALPILARIDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYG 117

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKL 414
            +  AL R      H+++GT     D ++   L        +L   DE  R G    +  
Sbjct: 118 AQLSALRR----GVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDV-- 171

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                    +L       +T + ++     I +I         + TV       D + + 
Sbjct: 172 -------ETILQKTPESRQTALFSATMPSAIKRIATTYLRDPDLITVAAKTGTADNIRQ- 223

Query: 475 LKVVLSEGKKAYWICPQIEEKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSD 527
            +  L  G +      +I E +  +        +   E   S  +    S A I+G +  
Sbjct: 224 -RYWLVSGMQKLDALTRILEAENFDGMIIFARTKLGTEELASKLQARGFSAAAINGDIQQ 282

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +E  +   K+G   +L+AT V   G+DV   S +I  +  H   +  H++ GR GR  
Sbjct: 283 QQRERTIQQLKDGKIDILVATDVAARGLDVERISHVINYDVPHDPESYTHRI-GRTGRAG 341

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI----AEEDLKQ-RKEGEILGIKQSGMP 642
                IL   P             +       +    A  D++  R + +I     +G  
Sbjct: 342 RSGEAILFIAPRERNLLKAIERATRQPISVLELPSVEAVNDVRISRFKEQIAETIAAGGL 401

Query: 643 KFLIAQPELHDS-----LLEIARKDAKHILTQDPDLTSVRGQ 679
           +   +  E ++       +EIA   AK      P L   + +
Sbjct: 402 EVFHSLIEDYEREHNVPAVEIAAALAKLARGDVPLLLDKKNE 443


>gi|302873918|ref|YP_003842551.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689833|ref|ZP_07632279.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302576775|gb|ADL50787.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 374

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 76/361 (21%), Positives = 128/361 (35%), Gaps = 27/361 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            PT  Q  +I  I            I +   G+GKTL  L+ +   +       QA+I+ 
Sbjct: 23  EPTPVQSESIPHIKAG------GDLIGEAQTGTGKTLAFLLPIFENISPTVNNVQALILT 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q      K  +   I +    G      + K L        H+II T     D
Sbjct: 77  PTRELAIQITNQALKLKEGKDINILAAYGGKDIGSQLKKL----KNNIHLIIATPGRLLD 132

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            I+   + L  +         Q L +  K     ++ +T+    +TL  ++  + D+ K+
Sbjct: 133 HIERKTVDLSKLKTFVLDEADQMLLMGFKNEVESIIKVTS-KKRQTLCFSATLNSDVKKL 191

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---KESNFRSVVE 505
             +     PI   I         I++  V  ++ +K   +C  ++E        F     
Sbjct: 192 AYRYMN-DPITVTIKKEEVTLSTIKQHVVETTDRRKQNALCAVLDEDNPFMAIIFCRTKR 250

Query: 506 RFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           R + L           A +H  +    +E +M +F+N   + LIAT V   G+D+   + 
Sbjct: 251 RADDLEVGLYQRGYNCAKLHSDIPQSKRERIMKAFRNADFQYLIATDVAARGLDISGVTH 310

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           I   +      + +H++ GR GR  E     L   P  +         LK     F I  
Sbjct: 311 IYNYDIPESVESYIHRI-GRTGRAGEEGYTCLFIDPKNNDMLEEIEEALK-----FQIPR 364

Query: 623 E 623
            
Sbjct: 365 R 365


>gi|294083671|ref|YP_003550428.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663243|gb|ADE38344.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 464

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 143/347 (41%), Gaps = 36/347 (10%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---- 321
             + +  PT  QE +I  IL           +     G+GKT    + M   + +G    
Sbjct: 17  AELGYESPTPIQEKSIPIILMGRD------ILGSAQTGTGKTASFTLPMIDILASGRAKA 70

Query: 322 --GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +++I+AP   LA Q  E  +K++ + ++ + ++ G +  + +  AL++       ++
Sbjct: 71  RMPRSLILAPTRELAAQVAESFEKFSTHHKLNMALLIGGVSFSDQNTALDK----GVDVL 126

Query: 380 IGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           I T     D  +  K++L  V     DE  R      +   +       ++    P+ +T
Sbjct: 127 IATPGRLLDHFERGKVMLNDVKVLVIDEADRMLDMGFIPDVE------RIVSLLPPLRQT 180

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW-ICPQIE 493
           L  ++    DI KI+ K      I  V  P +  D V + L+    + K+A      ++E
Sbjct: 181 LFFSATLSDDIHKISHKFVSNPKIIEVAPPASTADTVAQHLQWTDVKSKRAVLRDLLRVE 240

Query: 494 EKK-----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             K      +  R +     SL +H  S++A +HG M+   +   +D FK G   LLIA+
Sbjct: 241 TVKNAVIFCNRKRDISTLVKSLTKHEFSAVA-MHGDMTQSARLEALDKFKKGEVPLLIAS 299

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   G+D+   S +   +        +H++ GR GR  +      +
Sbjct: 300 DVAARGLDIAGLSHVFNFDVPMNAEDYVHRI-GRTGRAGKSGRAFTI 345


>gi|188588593|ref|YP_001920789.1| cold-shock deAd box protein a [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498874|gb|ACD52010.1| cold-shock deAd box protein a [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 367

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 83/366 (22%), Positives = 135/366 (36%), Gaps = 37/366 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  QE +I  IL           I +   G+GKTL  L+ +   +     G Q +I++
Sbjct: 23  TPTAIQEESIPKILSGKDV------IGEAKTGTGKTLAFLLPIFQNISPDTNGTQVLILS 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E  KK   N  I +    G      + K L+       H++I T     D
Sbjct: 77  PTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLKKLKH----NVHLVIATPGRLLD 132

Query: 389 SIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            I        KL  +++DE  +        L         ++  A+   +TL  ++  D 
Sbjct: 133 HIDRKTIDLSKLKTIVIDEADQM------LLMGFKNDIEKIMKVASKKHQTLCFSATMDS 186

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---KESNF 500
            + K+  +         +  P   +D+ I++  V  ++  K   +C  ++E        F
Sbjct: 187 QVKKLAYRYMIDPLFIDIKSPTIAVDK-IKQQVVETTDRWKQDSLCATLQEDNPFMAIIF 245

Query: 501 RSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                R + L             IH  +    +E +M SF+N   + LIAT V   GID+
Sbjct: 246 CRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNADIQYLIATDVAARGIDI 305

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              S I   +      + +H++ GR GR  E     +   P  S            T+ G
Sbjct: 306 SGVSHIYNYDTPETPESYIHRI-GRTGRAGEDGYTCMFVAPKDSSLLNAI-----ETKLG 359

Query: 618 FLIAEE 623
           F I   
Sbjct: 360 FTIPRR 365


>gi|255572963|ref|XP_002527412.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223533222|gb|EEF34978.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 505

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 138/366 (37%), Gaps = 45/366 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L+          I   + GSGKTL  L+     V A        G  
Sbjct: 121 EPTPIQAQGWPMALKGRD------LIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPI 174

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +   K+  +++I    I G +P+  + + L++       I+I T 
Sbjct: 175 VLVLAPTRELAVQIQQEATKFGASSRIKNTCIYGGVPKGPQVRDLQK----GVEIVIATP 230

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D ++ +         L+L   D     G   +++           +    P  +TL
Sbjct: 231 GRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKI---------VSQIRPDRQTL 281

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEE 494
             ++    ++ ++  +     P K VI   + + +  I +   ++SE +K   +   +E+
Sbjct: 282 YWSATWPKEVEQLARQFL-YNPYKVVIGSADLKANHAIRQHVDIVSENQKYNKLVKLLED 340

Query: 495 KKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             +        + +   ++              IHG  S  +++ V+  FK G   ++ A
Sbjct: 341 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA 400

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +        +H++ GR GR     +    +    ++ +   
Sbjct: 401 TDVAARGLDVKDVKFVINYDFPGSLEDYVHRI-GRTGRAGAKGTAYTFFTASNARFAKEL 459

Query: 608 LSVLKN 613
           +S+L+ 
Sbjct: 460 ISILEE 465


>gi|32475237|ref|NP_868231.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
 gi|32445778|emb|CAD78509.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
          Length = 931

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 77/360 (21%), Positives = 134/360 (37%), Gaps = 39/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            PT  Q   I  +L           + Q   G+GKT    + + + V+      Q +++A
Sbjct: 326 KPTPIQAEIIPYMLDGRDV------LAQSQTGTGKTAAFALPILSRVDVRSRRPQVLVLA 379

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q      KY  + +   V  I G      + K L R       +++GT     
Sbjct: 380 PTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRR----GVQVVVGTPGRVI 435

Query: 388 DSIQYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTL 435
           D ++   L        +L   DE    G     +  L +      V L +AT P P R +
Sbjct: 436 DHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVALFSATLPKPIRKI 495

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D     I  K      ++   + ++  D++    +++  E      +  + ++ 
Sbjct: 496 ADEYLNDPARITIKSKTITAASVRQRALFVSPRDKIDALTRILEVEETDGVIVFTKTKDS 555

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             S           L +   S+IA+ +G M    +E  +D  K G   +L+AT V   G+
Sbjct: 556 TLS-------VAEKLSQQGFSAIAL-NGDMPQKVRERTIDQLKRGQLDVLVATDVAARGL 607

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S +   +  H   + +H++ GR GR       I+     L+     +L  ++NT 
Sbjct: 608 DVPRISHVFNFDLPHDSESYVHRI-GRTGRAGRSGQAIIF----LTNAQRRQLRFIENTT 662


>gi|255527323|ref|ZP_05394201.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|255508970|gb|EET85332.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
          Length = 527

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 78/360 (21%), Positives = 140/360 (38%), Gaps = 36/360 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N+  K+ Q I       P++ Q  AI  IL      N M  I Q   G+GKTL     +
Sbjct: 9   LNLHKKVLQAIDAMGFEEPSQIQAEAIPVIL----SGNDM--IGQAQTGTGKTLAFGAPV 62

Query: 315 AAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            + +E+  +  A+++ P   LA Q  + + +  +  +  +  + G  P   + K+L R  
Sbjct: 63  LSQIESSDKISALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQIKSLRR-- 120

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVL 424
                +++GT     D I+   L L  V        DE    G    +           +
Sbjct: 121 --GVDVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDI---------EEI 169

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           + +     +TL+ ++    +I+K+  K    +     I+  +   E I++    +    +
Sbjct: 170 IKSLNKDRQTLLFSATMPKEIAKLASKYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDR 229

Query: 485 AYWICPQI---EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
              +C  +   E      F       + L E   +    +  +HG M    + + +  FK
Sbjct: 230 FESLCRILDIDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFK 289

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            GT   L+AT V   GIDV D S +I  +      + +H++ GR GR  +      L  P
Sbjct: 290 EGTLDFLVATDVAARGIDVDDVSHVINYDLPQDMESYVHRI-GRTGRANKEGIAYSLVTP 348


>gi|193666978|ref|XP_001948493.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 666

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 75/361 (20%), Positives = 134/361 (37%), Gaps = 35/361 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQA 324
           PT  Q  +    L        M+ I Q   GSGKTL  ++     +          G   
Sbjct: 145 PTPIQAVSWPIAL----SGRNMVGIAQ--TGSGKTLAYMLPAILHINHQPRLLRYDGPIV 198

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LAQQ  +    +  +T +    + G  P+  +   LER       I+I T  
Sbjct: 199 LVLAPTRELAQQIQQVAVSFGTSTFVRNTCVFGGAPKGPQVDDLER----GVEIVIATPG 254

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP-- 432
              D ++           L+L   D     G   Q R  + Q      VL+ +AT  P  
Sbjct: 255 RLIDFLERNTTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPPEV 314

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           + L    L D     +           + ++ +    E  ++L  +L++     +  P  
Sbjct: 315 KNLAEEFLDDYIQVNVGSLNLSANHNISQVVDVCDDYEKEQKLYALLTD----IFSQPDN 370

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +       +  V+    L          IHG  S  +++  ++ F++G   +L+AT V  
Sbjct: 371 KTIIFVETKRSVDNIVKLVNRNGWRSIGIHGNKSQNERDHTLNQFRSGQANILVATDVAA 430

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV D   +I  +  +     +H++ GR GR     +      P  ++ +   +SVL+
Sbjct: 431 RGLDVDDVKYVINFDYPNSSEDYVHRI-GRTGRSSRTGTAFTFVTPSNARQAKDLISVLQ 489

Query: 613 N 613
            
Sbjct: 490 E 490


>gi|189520693|ref|XP_001923830.1| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Danio rerio]
          Length = 671

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 77/366 (21%), Positives = 135/366 (36%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L        M+ I Q   GSGKTL  L+     +          G  
Sbjct: 117 EPTAIQAQGFPLAL----SGRDMVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPI 170

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +    Y ++++I    + G  P+  + + LER       I I T 
Sbjct: 171 CLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLER----GVEICIATP 226

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 227 GRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 286

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I   E  A      I  V +   + +++I+ ++ +++E +    
Sbjct: 287 VRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTI 346

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            +   +               IHG  S  +++ V+  F++G   +LIA
Sbjct: 347 IFV--------ETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIA 398

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +  +     +H++ GR  R     +    + P   + +   
Sbjct: 399 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLRQARDL 457

Query: 608 LSVLKN 613
           + VL+ 
Sbjct: 458 VRVLEE 463


>gi|290562842|ref|NP_001166829.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
 gi|95102744|gb|ABF51313.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
          Length = 512

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 138/372 (37%), Gaps = 49/372 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q          MS KN    +     GSGKTL  ++     +          G  
Sbjct: 102 EPTPIQAQGWPIA---MSGKN---LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 155

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +    +   + +    + G  P+  + + LER       I+I T 
Sbjct: 156 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLER----GVEIVIATP 211

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D ++           L+L   D     G + +++           +    P  +TL
Sbjct: 212 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKI---------IEQIRPDRQTL 262

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           + ++    ++ K+ E   G      +    +   + I ++++  +    +  K   +  +
Sbjct: 263 MWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQ-EHEKENKLNVLLQE 321

Query: 492 IEEKKES--------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           I + +E           +   E  +     +      +HG  +  +++ V+  FK G   
Sbjct: 322 IGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRAS 381

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+DV     +I  +  +     +H++ GR GR +   +    + P  S+ 
Sbjct: 382 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRI-GRTGRSKSKGTSYAFFTPSNSRQ 440

Query: 604 SYTRLSVLKNTE 615
           +   +SVL+   
Sbjct: 441 AKDLVSVLQEAN 452


>gi|198435916|ref|XP_002130991.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Ciona intestinalis]
          Length = 1150

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 78/410 (19%), Positives = 158/410 (38%), Gaps = 44/410 (10%)

Query: 229 AYDELLAGQIALLLMRKQFKKEI---GIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
              E +   +  + +R +   +     +   V  K+   + +     PT  Q  AI  I+
Sbjct: 466 EQVEAMRFDMENIKIRGKSCPKPIQSWVQAGVSYKMLNALKKANYEKPTVIQAQAIPAIM 525

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQH 337
                      I     GSGKT+  L+ M   +          G  AVIM P   LA Q 
Sbjct: 526 SGHD------LIGIAKTGSGKTVAFLLPMLRQIMDQRPLEDTEGPIAVIMTPTRELALQI 579

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            +  KK+T++ ++ V  + G    + +   L+R     A II+ T     D +       
Sbjct: 580 TKECKKFTKSLKLHVVCVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLTVNNGRV 635

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
               +   +++DE  R                  ++ +  P  +T++ ++     +  + 
Sbjct: 636 TNLRRCTYLVLDEADRMFDMGFEPQVMH------VINSCRPDRQTVLFSATFPRQMEALA 689

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVE 505
            +    KP++  +   + +   +++  ++L+E +K   +   + + +E      F    E
Sbjct: 690 RRILN-KPVEVQVGGRSVVCSDVKQQVLILTEEQKFLKLLELLGQYQEKGAVLVFVDKQE 748

Query: 506 RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           R + L +       S   +HG +   D++S++  FK G  +LLIAT+V   G+DV +  +
Sbjct: 749 RADYLLKELMDKSYSCMALHGGIDQYDRDSIISDFKRGVNQLLIATSVAARGLDVKNLIL 808

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           ++  N  +     +H+  GR GR               ++ +   +  L+
Sbjct: 809 VVNFNCPNHYEDYVHR-CGRTGRAGNKGFAYTFITQDQARYAGEIIKALE 857


>gi|187933251|ref|YP_001885671.1| cold-shock deAd box protein a [Clostridium botulinum B str. Eklund
           17B]
 gi|187721404|gb|ACD22625.1| cold-shock deAd box protein a [Clostridium botulinum B str. Eklund
           17B]
          Length = 367

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 83/366 (22%), Positives = 135/366 (36%), Gaps = 37/366 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  QE +I  IL           I +   G+GKTL  L+ +   +     G Q +I++
Sbjct: 23  TPTPIQEESIPKILLGKDV------IGEAKTGTGKTLAFLLPIFQNISPNTNGTQVLILS 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E  KK   N  I +    G      + K L+       H++I T     D
Sbjct: 77  PTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLKKLKH----NIHLVIATPGRLLD 132

Query: 389 SIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            I+       KL  +++DE  +        L         ++  A+   +TL  ++  D 
Sbjct: 133 HIERKTIDLSKLKTIVIDEADQM------LLMGFKNDIEKIMKAASKKHQTLCFSATMDS 186

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---KESNF 500
            + K+  +         +  P   +D+ I++  V  ++  K   +C  ++E        F
Sbjct: 187 QVKKLAYRYMIDPLFIDIKSPTIAVDK-IKQQVVETTDRWKQDSLCAALQEDNPFMAIIF 245

Query: 501 RSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                R + L             IH  +    +E +M SF+N   + LIAT V   GID+
Sbjct: 246 CRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNADIQYLIATDVAARGIDI 305

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              S I   +      + +H++ GR GR  E     +   P  S         L     G
Sbjct: 306 SGVSHIYNYDTPETPESYIHRI-GRTGRAGEDGYTCMFVAPKDSYLLNAIEKKL-----G 359

Query: 618 FLIAEE 623
           F I   
Sbjct: 360 FTIPRR 365


>gi|126290158|ref|XP_001370541.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Monodelphis domestica]
          Length = 1175

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 154/399 (38%), Gaps = 44/399 (11%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 518 WVQCGISMKILNSLKKHGYEKPTPIQAQAIPAIMSGRD------LIGIAKTGSGKTIAFL 571

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 572 LPMFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 631

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 632 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 687

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 688 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 740

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E  K   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 741 VIVIEEENKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 800

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 801 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 859

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
                       ++ +   +  L+    G  +   DL++
Sbjct: 860 KGYAYTFITEDQARYAGDIIKALE--LSGTAV-PHDLEK 895


>gi|224134991|ref|XP_002327540.1| predicted protein [Populus trichocarpa]
 gi|222836094|gb|EEE74515.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 73/395 (18%), Positives = 147/395 (37%), Gaps = 44/395 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L+          I   + GSGKTL  L+     V A        G  
Sbjct: 113 EPTPIQAQGWPMALKGRD------LIGIAETGSGKTLAYLLPAIIHVNAQPFLAPGDGPI 166

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +   K+  +++I    I G +P+  + + L++       I+I T 
Sbjct: 167 VLVLAPTRELAVQIQQEAAKFGASSRIKNTCIYGGVPKGPQVRDLQK----GVEIVIATP 222

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       ++  +++DE  R          +K  +         P  +TL  +
Sbjct: 223 GRLIDMMESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR------PDRQTLYWS 276

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +    ++ ++  +         +  P  + +  I +   ++SE +K   +   +E+  + 
Sbjct: 277 ATWPKEVEQLARQSLYNPYKVIIGSPDLKANHAIRQHVDIVSENQKYNKLVKLLEDIMDG 336

Query: 498 ------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  + +   ++              IHG  S  +++ V+  FK G   ++ AT V 
Sbjct: 337 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 396

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D   +I  +        +H++ GR GR     +    +    ++ +   +++L
Sbjct: 397 ARGLDVKDVKYVINYDFPGSLEDYVHRI-GRTGRAGAKGTAYTFFTAGNARFAKELVTIL 455

Query: 612 KNTEDGFLIAEEDLKQ-RKEGEILGIKQSGMPKFL 645
           +  E G  ++ E     R    +L    SG   F 
Sbjct: 456 E--EAGQKVSPELTAMARGAPPLL----SGHGGFR 484


>gi|183979315|dbj|BAG30754.1| DEAD box polypeptide 5 [Papilio xuthus]
          Length = 539

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 139/372 (37%), Gaps = 49/372 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       +      + ++ I Q   GSGKTL  ++     +          G  
Sbjct: 129 EPTPIQAQGWPIAM----SGHNLVGIAQ--TGSGKTLAYILPAIVHINNQPPIRRGDGPI 182

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +    +   + +    + G  P+  + + LER       I+I T 
Sbjct: 183 ALVLAPTRELAQQIQQVACDFGNASYVRNTCVFGGAPKREQARDLER----GVEIVIATP 238

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D ++           L+L   D     G + +++           +    P  +TL
Sbjct: 239 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKI---------IEQIRPDRQTL 289

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           + ++    ++ K+ E   G      +    +   + I ++++  +    +  K   +  +
Sbjct: 290 MWSATWPKEVKKLAEDYLGDYLQINIGSLQLSANHNILQIVDVCQ-EHEKENKLNVLLQE 348

Query: 492 IEEKKES--------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           I + +E           +  VE        F      +HG  +  +++ V+  FK G   
Sbjct: 349 IGQSQEPGAKTIIFVETKRKVENITRNIRRFGWPAVCMHGDKTQQERDDVLYQFKQGRAS 408

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+DV     +I  +  +     +H++ GR GR +   +    + P  S+ 
Sbjct: 409 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRI-GRTGRSKSKGTSYAFFTPSNSRQ 467

Query: 604 SYTRLSVLKNTE 615
           +   ++VL+   
Sbjct: 468 AKDLVNVLQEAN 479


>gi|73965229|ref|XP_861744.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 10 [Canis
           familiaris]
          Length = 616

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 91/442 (20%), Positives = 158/442 (35%), Gaps = 65/442 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVETY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 217 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 334 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 385

Query: 536 SFKNGTCKLLIATTVIEV--GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
            FK+G   +LIAT V     G+DV D   +I  +  +     +H++ GR  R  +  +  
Sbjct: 386 EFKHGKAPILIATDVASRGLGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAY 444

Query: 594 LLYHPPLSKNSYTRLSVLKNTE 615
             + P   K     +SVL+   
Sbjct: 445 TFFTPNNIKQVSDLISVLREAN 466


>gi|323465797|gb|ADX69484.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus helveticus
           H10]
          Length = 499

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 83/425 (19%), Positives = 151/425 (35%), Gaps = 52/425 (12%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE  I   LQ          I Q   G+GKT    + +  +++      QA+
Sbjct: 20  GFEEATPIQEQTIPLALQGKDV------IGQAQTGTGKTAAFGLPILQSIDKKEKAIQAI 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E + +  ++    V+++ G      + ++L+   H    I++GT   
Sbjct: 74  IIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK---HHVPSILVGTPGR 130

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTL 435
             D ++           ++L   DE    G  Q +   L         LL +AT      
Sbjct: 131 LLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIQDIESILKYVKNCKQTLLFSAT------ 184

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
                    I +I EK   + P    I       ++I++  V   E +K   +C  I+ +
Sbjct: 185 -----MPKPILRIGEKFM-KDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQ 238

Query: 496 K---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                  F     R + L     +     A IHG +S   + +V+  F+ G   +L+AT 
Sbjct: 239 GPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATD 298

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+   + +   +      + +H++ GR GR  +    +    P       T   
Sbjct: 299 VAARGLDISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGQNGVSVTFVTPNEIGYMRTIEQ 357

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           + K       +  +D   R +   L   ++ +   +      +        +DA  +L  
Sbjct: 358 LTKKKMSPLRLPTDDQALRGQ---LKQAKAEIEDLMNGDLGKYT-------QDASELLDN 407

Query: 670 DPDLT 674
              L 
Sbjct: 408 YSALD 412


>gi|253575100|ref|ZP_04852439.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845556|gb|EES73565.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 410

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 74/346 (21%), Positives = 131/346 (37%), Gaps = 38/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q+ AI  IL           +     G+GKT    I     +   G         
Sbjct: 23  APTPIQQQAIPPILSGQD------LLGCAQTGTGKTAAFAIPTLQLLHKDGAPRAGRRNI 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LA Q YE    Y +   +   +I G + Q  +  AL++       I++ T
Sbjct: 77  RALVITPTRELALQIYENFCAYGKYLPLKCAVIFGGVSQKPQEAALQK----GVDILVAT 132

Query: 383 HALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D +Q        + L+I+DE  R      +   +K       ++  TP  R  +L
Sbjct: 133 PGRLNDLMQQKLIDLKNVELLILDEADRMLDMGFIHDVKK-------IIAKTPSQRQTLL 185

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE--- 494
            S    D          R P+K  I P++   + I +    + +G K   +   +++   
Sbjct: 186 FSATMPDAIAQMADSILRNPVKVEITPVSSTVDTIGQYLYYVDKGNKRDLLIHLLKDPSI 245

Query: 495 ---KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                 +  +   +R          S   IHG  S   +++ +  FKN T ++L+AT + 
Sbjct: 246 ESAIVFTRTKHGADRLVRHLTKAQVSAKAIHGDKSQGARQTALQDFKNRTLRVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             GID+ + S +I     +     +H++ GR GR  +    I    
Sbjct: 306 ARGIDIDELSHVINYELPNIPETYVHRI-GRTGRAGQSGVAISFCD 350


>gi|92112945|ref|YP_572873.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
 gi|91796035|gb|ABE58174.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
          Length = 452

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 136/374 (36%), Gaps = 41/374 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +P+  Q  AI  +L+          +     G+GKT    + +   + AG +A       
Sbjct: 23  TPSPIQAKAIPAVLEGRDV------MAAAQTGTGKTAGFTLPILERLAAGTRAPGKQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q    I+ Y ++  +   ++ G +    +   L     G   I++ T  
Sbjct: 77  LILTPTRELAAQIGANIEAYGKHLPLRSAVVFGGVKINPQIAKLR----GGVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++ +  L ++++DE  R      +            ++   P  R  +L S
Sbjct: 133 RLLDLHGQKAVNFDALDVLVLDEADRMLDMGFIHDI-------RRILKTLPSKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                  +   K     P++  + P N   E + +    + + +K   +   I E +   
Sbjct: 186 ATFSQEIRQLAKGLVNDPVEISVTPRNTTAETVTQWIHPVDKARKPALLTHLIHEHQWQQ 245

Query: 500 FRSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               +      N L  H   +    A IHG  S   +   +D FK+G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLSRHLEEAGIEAAAIHGNKSQNARTKALDGFKSGEIRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++     +     +H++ GR GR       I L      K       +++ 
Sbjct: 306 GLDINQLPQVVNFELPNVAEDYVHRI-GRTGRAGASGHAISLVCAEEGKELAGIERLIRQ 364

Query: 614 TED-----GFLIAE 622
           T +     GF  +E
Sbjct: 365 TLERQTIAGFEPSE 378


>gi|307204462|gb|EFN83169.1| ATP-dependent RNA helicase DDX42 [Harpegnathos saltator]
          Length = 770

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 76/400 (19%), Positives = 141/400 (35%), Gaps = 45/400 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              +  + + I +N    PT  Q  A+   L           I     GSGKT   +  M
Sbjct: 259 FGFDDALMKAIRKNEFTQPTPIQAQAVPAALNGRD------IIGIAKTGSGKTAAFIWPM 312

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   +I+AP   L+QQ Y+  KK+ +   I V    G   +  + K
Sbjct: 313 LVHIMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSK 372

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKA 418
           ALE      A I++ T     D ++           L+L   D     G + +++     
Sbjct: 373 ALES----GAEIVVATPGRMIDLVKMKATNLIRVTFLVLDEADRMFDMGFEPQVRSICNH 428

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKV 477
                      P  +TL+ ++     + K+  +     P++ V   +   + +V + + +
Sbjct: 429 VR---------PDRQTLLFSATFKKRVEKLA-RDVLMDPVRIVQGDVGEANTDVTQHVIM 478

Query: 478 VLSEGKKAYWICPQIEEK-------KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
             + G K  W+   + E             +   E   +  +     + ++HG M  I++
Sbjct: 479 FHNPGGKWNWLLQNLVEFLSAGSLLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIER 538

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             V+ +FK      L+AT V   G+D+     +I  +         H++ GR GR  E  
Sbjct: 539 NKVITAFKKKDVSTLVATDVAARGLDIPHIKTVINYDVARDIDTHTHRI-GRTGRAGEKG 597

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           +   L      + S   +  L+        +  DL  +  
Sbjct: 598 TAYTLVTEKDKEFSGHLVRNLEGANQEVPKSLMDLAMQSA 637


>gi|297824215|ref|XP_002879990.1| hypothetical protein ARALYDRAFT_483345 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297325829|gb|EFH56249.1| hypothetical protein ARALYDRAFT_483345 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 627

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 128/376 (34%), Gaps = 47/376 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
            PT  Q  AI  +L+          +     GSGKT      + + +             
Sbjct: 179 KPTPVQRHAIPILLEGRD------LMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSR 232

Query: 322 ---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                AVI++P   LA Q ++  KK++  T + V +  G  P   + + LER       I
Sbjct: 233 TVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELER----GVDI 288

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRL------KLTQKATAPHVL 424
           ++ T     D ++  +        L L   D     G + ++                 L
Sbjct: 289 LVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTL 348

Query: 425 LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKT---VIIPINRIDEVIERLKVVL 479
           L +AT     + L    L +     +    +    I      ++  ++   +++ L    
Sbjct: 349 LFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQR 408

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G +       +        +   +   +           IHG  +  ++E  + +FK+
Sbjct: 409 ENGIQGKQALTLV----FVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKS 464

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+   + ++  +  +     +H++ GR GR  +       ++  
Sbjct: 465 GRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI-GRTGRAGKSGLATAFFNDG 523

Query: 600 LSKNSYTRLSVLKNTE 615
            +  +     +++   
Sbjct: 524 NTSLARPLAELMQEAN 539


>gi|260752364|ref|YP_003225257.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258551727|gb|ACV74673.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 506

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 74/354 (20%), Positives = 144/354 (40%), Gaps = 29/354 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLR--ILQGDVGSGKTLVALIAMAAAVEAG------GQ 323
            PT  Q +AI  +L        M+R  I     G+GKT   ++ M   +  G       +
Sbjct: 37  EPTPVQAAAIPSVL--------MMRDLIAVAQTGTGKTASFVLPMIDILAHGRCRARMPR 88

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           ++I+ P   LA Q  E  +KY +  ++ + ++ G +P A ++ ALE+       ++I T 
Sbjct: 89  SLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEK----GVDVLIATP 144

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D  +  K++L    E        R+           +        +TL+ ++    
Sbjct: 145 GRLLDLFERGKILLSSC-EMLVIDEADRMLDMGFIPDIETICTKLPTSRQTLLFSATMPP 203

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------ 497
            I K+ ++     P +  I      + +I++  + +S   K   +C  +  +K+      
Sbjct: 204 AIKKLADRFL-SNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDMLRAEKDHTAIIF 262

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N ++ V +  +  E    S+  IHG MS  ++ S ++ FKNG   +L+A+ +   G+DV
Sbjct: 263 CNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVASDIAARGLDV 322

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              S +   +        +H++ GR GRG      +    P   +       ++
Sbjct: 323 KGISHVFNFDVPTHPDDYIHRI-GRTGRGGASGEALTFVTPADEEAITAIEKLM 375


>gi|73965187|ref|XP_537598.2| PREDICTED: similar to DEAD box polypeptide 42 protein isoform 1
           [Canis familiaris]
          Length = 696

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 200 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 252

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 306

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 367 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 423 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 472

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 473 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 532

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 533 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 591

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 636


>gi|258511452|ref|YP_003184886.1| DEAD/DEAH box helicase domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478178|gb|ACV58497.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 541

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 142/394 (36%), Gaps = 33/394 (8%)

Query: 234 LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNR 293
           +  +      RK           +  ++ Q I       P+  Q + I  +L+       
Sbjct: 1   MWEETRQAEERKVESMSSFESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDV--- 57

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQII 351
              I Q   G+GKT    I +   V      QA+++ P   LA Q    I+K  +  ++ 
Sbjct: 58  ---IGQAQTGTGKTAAFGIPLVERVSTEPRVQAIVLTPTRELAIQVAGEIRKIAKYKRVR 114

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQ 403
              I G     H+ +AL++       I+IGT     D I    L L  V        DE 
Sbjct: 115 SVPIYGGQSIVHQIRALKQ----GVQIVIGTPGRVLDHIHRGTLSLSDVRMVVLDEADEM 170

Query: 404 HRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIK 459
              G    +   L +  +    +L +AT       L L  + D     +         I 
Sbjct: 171 LDMGFIDDIEAILRETPSDRQTMLFSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQID 230

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            V   +   +++    ++V SE  +   I  + +       R V +   +L      +  
Sbjct: 231 QVCYKVLERNKLDSLCRIVDSEDIQLGIIFCRTK-------RGVDDLVEALLARGYLADG 283

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
           + HG +S   ++ VM  F+    +LL+AT V   G+DV D + +I  +      + +H++
Sbjct: 284 L-HGDLSQAQRDRVMRKFRKNEIELLVATDVAARGLDVDDVTHVINYDVPQDPESYVHRI 342

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            GR GR  +    I L  P   K        +K 
Sbjct: 343 -GRTGRAGKRGLAITLVTPREYKLLKQIEREIKQ 375


>gi|283856424|ref|YP_162949.2| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|283775425|gb|AAV89838.2| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 506

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 74/354 (20%), Positives = 144/354 (40%), Gaps = 29/354 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLR--ILQGDVGSGKTLVALIAMAAAVEAG------GQ 323
            PT  Q +AI  +L        M+R  I     G+GKT   ++ M   +  G       +
Sbjct: 37  EPTPVQAAAIPSVL--------MMRDLIAVAQTGTGKTASFVLPMIDILAHGRCRARMPR 88

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           ++I+ P   LA Q  E  +KY +  ++ + ++ G +P A ++ ALE+       ++I T 
Sbjct: 89  SLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEK----GVDVLIATP 144

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D  +  K++L    E        R+           +        +TL+ ++    
Sbjct: 145 GRLLDLFERGKILLSSC-EMLVIDEADRMLDMGFIPDIETICTKLPTSRQTLLFSATMPP 203

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------ 497
            I K+ ++     P +  I      + +I++  + +S   K   +C  +  +K+      
Sbjct: 204 AIKKLADRFL-SNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDMLRAEKDHTAIIF 262

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N ++ V +  +  E    S+  IHG MS  ++ S ++ FKNG   +L+A+ +   G+DV
Sbjct: 263 CNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVASDIAARGLDV 322

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              S +   +        +H++ GR GRG      +    P   +       ++
Sbjct: 323 KGISHVFNFDVPTHPDDYIHRI-GRTGRGGASGEALTFVTPADEEAITAIEKLM 375


>gi|146184027|ref|XP_001027635.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|146143373|gb|EAS07393.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 713

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 76/376 (20%), Positives = 147/376 (39%), Gaps = 39/376 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            P+  Q  A   +L           I   + GSGKTL  L+     + A        G  
Sbjct: 123 KPSPIQSLAFPVVLSGHD------LIGIAETGSGKTLSFLLPSIVHINAQPTVKKGDGPI 176

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q     +++ +++++    I G   +  +R  L++       ++I T 
Sbjct: 177 VLVLAPTRELAMQIERESERFGKSSKLKCACIYGGADKYSQRALLQQ----GVDVVIATP 232

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       ++  +++DE  R          +K      +L    P  +TL+ +
Sbjct: 233 GRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRK------ILGQIRPDRQTLMFS 286

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +    ++  + +      P+   I      I+E I+++  V  + KK   +  Q++   +
Sbjct: 287 ATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVTDQSKKINQLIKQLDCLTQ 346

Query: 498 SNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +        +   E  + +          IHG  +  D++ VM+ FK+G C++LIAT V
Sbjct: 347 KDKVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFKSGECRILIATDV 406

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE-ISSCILLYHPPLSKNSYTRLS 609
              G+DV D S +   +        +H++ GR GR      +   L      K S   + 
Sbjct: 407 ASRGLDVKDVSHVFNYDFPKVMEDYVHRI-GRTGRAGAYGCAVSFLTFEDDKKISREYVQ 465

Query: 610 VLKNTEDGFLIAEEDL 625
           +L + +    I   DL
Sbjct: 466 MLHDAKQEIPIDLLDL 481


>gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
           [Aliivibrio salmonicida LFI1238]
 gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
           [Aliivibrio salmonicida LFI1238]
          Length = 495

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 146/375 (38%), Gaps = 41/375 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +++          +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVIEGKDV------MAAAQTGTGKTAGFTLPLLERLSKGQKLKFNQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q +E ++KY+ N  +  +++ G +    + + L +       +++ T  
Sbjct: 77  LILTPTRELAAQVHESVEKYSVNLPLTSDVVFGGVKANPQMQRLRK----GVDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     +I++ +L ++++DE  R      +   +K       ++   P  R  +L S
Sbjct: 133 RLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKK-------ILNKLPKNRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  +   N   E +E+   V+ + KKA  +   I++     
Sbjct: 186 ATFSDEIRQLAKGLVNNPVEISVATRNTTAETVEQSVYVVDKTKKARVLTKLIKDNDWKQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E    S A IHG  S   +   + +FK+G  ++L+AT +   
Sbjct: 246 VLVFSKTKHGANRLAKTLEEKGISSAAIHGNKSQGARTKALANFKSGQVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL-- 611
           G+D+     +I  +        +H++ GR GR       I       +   +    ++  
Sbjct: 306 GLDIEQLPQVINVDLPKVPEDYVHRI-GRTGRAGATGKAISFVSEDEASELFAIERLIQK 364

Query: 612 ---KNTEDGFLIAEE 623
              ++T +GF    +
Sbjct: 365 ILPRHTLEGFEPEMK 379


>gi|194763447|ref|XP_001963844.1| GF21236 [Drosophila ananassae]
 gi|190618769|gb|EDV34293.1| GF21236 [Drosophila ananassae]
          Length = 1211

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 81/413 (19%), Positives = 160/413 (38%), Gaps = 44/413 (10%)

Query: 225 RERLAYDELLAGQIALLLMRKQF--KKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAI 281
           R   A  E    ++  + ++ +   K           K    +LR + F  PT  Q  AI
Sbjct: 476 RMTAAEVEKYRSELEGVQVKGKGCPKPIKTWAQCGVSKKEMDVLRRLGFEKPTPIQCQAI 535

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGIL 333
             I+           I     GSGKTL  ++ M   +          G  A+IMAP   L
Sbjct: 536 PAIMSGRD------LIGIAKTGSGKTLAFILPMFRHILDQPSLEDGDGAIAIIMAPTREL 589

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--- 390
             Q  + I+K++++  +    + G    + +   L+R +     II+ T     D +   
Sbjct: 590 CMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGSE----IIVCTPGRMIDMLAAN 645

Query: 391 -----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
                   ++  V++DE  R                  ++    P  +T++ ++     +
Sbjct: 646 SGRVTNLRRVTYVVLDEADRMFDMGFEPQVM------RIIDNVRPDRQTVMFSATFPRQM 699

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----SNFR 501
             +  +   +KPI+ ++   + + + +E+  V+L++  K + +   +   +E      F 
Sbjct: 700 EALARR-ILKKPIEVIVGGRSVVCKDVEQHVVILNDDAKFFKLLELLGIYQEAGSIIVFV 758

Query: 502 SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
              E  + L      +      +HG +   D++S +  FK+G  +LLIAT+V   G+DV 
Sbjct: 759 DKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVK 818

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           D  +++  +  +     +H+  GR GR  +         P  S+ +   +  L
Sbjct: 819 DLILVVNYDVPNHYEDYVHR-CGRTGRAGKKGQAFTFITPEQSRYAGDIIRAL 870


>gi|209885134|ref|YP_002288991.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
 gi|209873330|gb|ACI93126.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
          Length = 469

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 81/365 (22%), Positives = 136/365 (37%), Gaps = 42/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI  +L       R   +     G+GKT   ++ M   +E G       + +
Sbjct: 23  TPTPIQEQAIPHVLA------RRDVLGIAQTGTGKTAAFVLPMLTMLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E I  Y    ++ + ++ G M    +   L R       I+I T   
Sbjct: 77  ILEPTRELAAQVQENIDHYCAGQKLNIALLIGGMSFGDQDAKLMR----GVDILIATPGR 132

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--R 433
             D  +  KL+L  V     DE  R      +   ++           L  TAT  P  R
Sbjct: 133 LLDHTERGKLLLTGVEMLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPPEIR 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK----AYWIC 489
            +  T L + +  +I+   +    +    I I         L   L    K    A   C
Sbjct: 193 RITETFLHNPEKVEISRPASTATTVTQSQIGIGSDAHAKRELLRQLLRDAKDLKNAIIFC 252

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         R V     SL +H   + A+ HG M    + + +D F+ G   LL+A+ 
Sbjct: 253 NR--------KRDVAILHKSLQKHGFGAAAL-HGDMDQSARMTALDQFRKGELPLLVASD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ + S +   +  +     +H++ GR GR   + + I +  P   K+      
Sbjct: 304 VAARGLDIPEVSHVFNFDVPYHPDDYVHRI-GRTGRAGRLGTAISIVSPTDQKSILAIEK 362

Query: 610 VLKNT 614
           ++  +
Sbjct: 363 LIGQS 367


>gi|328956669|ref|YP_004374055.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
 gi|328672993|gb|AEB29039.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
          Length = 533

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/366 (19%), Positives = 132/366 (36%), Gaps = 39/366 (10%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
             + F   T  Q   I   L+          I Q   G+GKT    + M   ++      
Sbjct: 22  ERLGFEEATPIQAQTIPLALEGKDV------IGQAQTGTGKTAAFGLPMLQKIDVNNRNV 75

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + + +++ +I V+++ G    + + +AL+       HI++GT
Sbjct: 76  QGLVIAPTRELAIQTQEELFRLSRDKKIRVQVVYGGADISRQIRALKDA----PHIVVGT 131

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I+   L L  V        DE    G    ++                   +T
Sbjct: 132 PGRLLDHIKRKTLKLGHVETLVLDEADEMLNMGFIDDIETIIHEVPAE---------RQT 182

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I +I  +     P    I      D +IE+  V   + +K   +    + 
Sbjct: 183 LLFSATMPPAIKRIGVRFM-SNPEHVQIKATTMSDSLIEQFFVRCKDFEKFDIMTRLFDV 241

Query: 495 KKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +           +  V+      E        IHG +S   + SV+ SFK G   +L+AT
Sbjct: 242 QTPELTIIFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKSFKTGKLDILVAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+   + +   +      + +H++ GR GR  +    +    P          
Sbjct: 302 DVAARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGVSVTFITPNEMGYLRVIE 360

Query: 609 SVLKNT 614
            + K T
Sbjct: 361 DLTKKT 366


>gi|312881457|ref|ZP_07741251.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370879|gb|EFP98337.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 620

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/417 (21%), Positives = 166/417 (39%), Gaps = 35/417 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q ++I  +++          + +   G+GKT    + +   +E      QA+++A
Sbjct: 28  SPTPIQAASIPHLMKG------SDALGKAQTGTGKTAAFSLPLLNKLELSQRKPQAIVLA 81

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN + + V  I G      + +AL+      AHI++GT    Q
Sbjct: 82  PTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIVDQMRALKS----GAHIVVGTPGRVQ 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDI 445
           D I   +L    +DE H F + +  ++        V  ++  A    + ++ ++     +
Sbjct: 138 DLINRDRL---HLDEVHTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPML 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
             I E+   R PI   +   N   + +E+   V+   +K   +   +E ++         
Sbjct: 195 KNIVERFL-RNPITIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            + +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V K+T +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSTMEEIQ 372

Query: 620 IAEED------LKQRKEGEILGIKQS-GMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           +   D      L++    E+   K+   + KF     +L D+L   A   A  +L +
Sbjct: 373 LPHRDKVAAARLEKLGA-ELETEKEHKALEKFTELVEKLQDTLELDAATLAAILLKR 428


>gi|114330892|ref|YP_747114.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas
           eutropha C91]
 gi|114307906|gb|ABI59149.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
          Length = 455

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/358 (19%), Positives = 141/358 (39%), Gaps = 38/358 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q+ AI +++           +     G+GKT   ++     +         G + 
Sbjct: 23  SPTPIQQQAIPELIAGHDV------MASAQTGTGKTAAFMLPALHRLATPAKIQGRGPRI 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  E   KY +    + V  I G MP   + K L ++      +++ T 
Sbjct: 77  LVLTPTRELALQVSEAASKYGKFLPRVNVVSILGGMPYPLQNKLLSQV----VDVLVATP 132

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVL 437
               D I+     + +L ++++DE  R      +   ++       + ++TP   +TL+ 
Sbjct: 133 GRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIHDVER-------IASSTPTNRQTLLF 185

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE--- 494
           ++  D  I KI  +         +     ++D + +R+  V     K   +   + +   
Sbjct: 186 SATLDTAIEKIATRLLKMPKRIQIASQHAKLDHIEQRMHYVDDLTHKNRLLDHLLCDTTI 245

Query: 495 KKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           K+   F +     +SL ++ ++     A +HG M+  ++   +   + G  K+L+AT V 
Sbjct: 246 KQAIVFTATKRDADSLADNLSAQGHKAAAMHGDMTQRERTRTLTGLRQGRLKILVATDVA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
             GID+ D + +I  +   F    +H++ GR GR       +         +      
Sbjct: 306 ARGIDIADITHVINFDLPKFAEDYVHRI-GRTGRAGASGIAVSFASGKDGIHLKRIER 362


>gi|261250797|ref|ZP_05943371.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891]
 gi|260937670|gb|EEX93658.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891]
          Length = 660

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 90/441 (20%), Positives = 165/441 (37%), Gaps = 55/441 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q +AI  +L           + +   G+GKT    + +   ++      QA+I+A
Sbjct: 28  SPTPIQAAAIPHLLAGKD------ALGKAQTGTGKTAAFSLPLLNKLDLAQRKPQAIILA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   +N   + V  I G      + +AL       AHI++GT    Q
Sbjct: 82  PTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRAL----KNGAHIVVGTPGRVQ 137

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQR--LKLTQKATAPHVLLMTAT--PIPRTL 435
           D I   +L L  V        DE    G        +    ++   +L +AT  P+ +++
Sbjct: 138 DLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPSSAQRVLFSATMPPMLKSI 197

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           V   L D +   +  K      ++     +  +++     +++ +E   A  +  +    
Sbjct: 198 VERFLRDPETIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVFVRT--- 254

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                R   ER            + +HG +    +E  +D  K G   +L+AT V+  G+
Sbjct: 255 -----RQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGL 309

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   + +   +      + +H++ GR GR       ILL      +   T   V K++ 
Sbjct: 310 DVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSSM 368

Query: 616 DGFLIAEED------LKQRKEGEILGIKQ-------SGMPKFLIAQPELHDSLLEI---A 659
           +   +   D      L +    E+   K+       S + + L    EL  + L      
Sbjct: 369 EEIQLPHRDKVAEARLAKLGA-ELETEKEHKALEKFSELVEKLQESLELDAATLAAILLK 427

Query: 660 RKDAKH---ILTQDPDLTSVR 677
           R+  K     + +DP + ++ 
Sbjct: 428 RQQGKRPLFYIGEDPMIEAIE 448


>gi|326794221|ref|YP_004312041.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326544985|gb|ADZ90205.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 453

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 142/371 (38%), Gaps = 43/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +PT  QE AI +ILQ          I     GSGKT    + +  A++ G +A       
Sbjct: 50  APTSIQEQAIPEILQGHD------LIATAQTGSGKTAAFCLPILQALKDGEKAKPNHVRC 103

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+AP   LA Q    IK + ++  +  ++I G +    +RK L+R     + I++ T  
Sbjct: 104 LIIAPTRELAIQLNANIKAFNEHLTLRHQVIFGGVRVLPQRKYLKR----GSDILVATPG 159

Query: 385 LFQD-----SIQYYKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTAT--PIP 432
              D      I +  L  +++DE  R     F  +    +         LL +AT  P  
Sbjct: 160 RLLDLHQRGDILFDSLTHLVLDEADRLLDLGFAKELDQIIQALPKQRQTLLFSATFAPPI 219

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           + L    L         +K A +  I   + P+++  +  E L  +L+    A  I    
Sbjct: 220 KKLAKKILNQPKDVTTIQKAAAKPNINQWLHPVDKKRKT-ELLLELLNRKPHAQVIVFT- 277

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N +   +           S   +H   +  ++  V D FKN    +L+AT V  
Sbjct: 278 ------NTKKNADLVAQALNQDGISAGALHSDRTQDERIHVFDQFKNNEISILVATDVAA 331

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL-----YHPPLSKNSYTR 607
            GID+ +  ++I  +        +H++ GR GR         +     +   L   + T 
Sbjct: 332 RGIDIQNLPLVINYDLPKVSEDYIHRI-GRTGRAGHAGQAFSIASADEFDALLDIEALTG 390

Query: 608 LSVLKNTEDGF 618
             + +   DGF
Sbjct: 391 KKITRKYIDGF 401


>gi|150391088|ref|YP_001321137.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950950|gb|ABR49478.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 549

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 77/355 (21%), Positives = 128/355 (36%), Gaps = 24/355 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  Q  AI  +L       +   + Q   G+GKTL  ++ +   V       QA+I+ 
Sbjct: 25  EPTPVQLQAIPPLLA------QRDVMAQAQTGTGKTLAFILPILERVNVEKPTIQALIIT 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q     KK  +   I +    G      + + L     G  HIIIGT     D
Sbjct: 79  PTRELAIQITAETKKLAEVKGINILAAYGGQDVEQQLRKL----KGSIHIIIGTPGRLLD 134

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT-LVLTSLGDIDISK 447
            ++   + L  +         Q L +        +  MT  P  R  +  ++     +  
Sbjct: 135 HLRRKTINLGKLSMLVLDEADQMLHMGFLRDVEDI--MTHIPKRRQNMFFSATMPNQVRT 192

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---KESNFRSVV 504
           + E+         V      +DE+ + +      GK+   +C   +E        F    
Sbjct: 193 LAEQYMKDPVQIQVQSKRVTLDEIRQVVIETTDRGKQ-DLLCQLFDEYNPFMAIIFCRTK 251

Query: 505 ERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            R  +L+E       +   +HG ++   +E VM +FK    + L+AT V   G+D+   +
Sbjct: 252 RRAIALNEALINLGYNSDELHGDLTQAKREKVMKAFKKSKIQYLVATDVAARGLDIEGVT 311

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
            I   +    G + +H++ GR GR  E    I                V+K   D
Sbjct: 312 HIFNYDIPQDGESYIHRI-GRTGRAGETGMAITFMTSRDRDELKIIEKVIKMDLD 365


>gi|319651117|ref|ZP_08005250.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317397171|gb|EFV77876.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 463

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 89/437 (20%), Positives = 160/437 (36%), Gaps = 50/437 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAP 329
            PT  Q  AI      M  K     I Q   G+GKT    + +   ++   G Q +++AP
Sbjct: 5   EPTPIQAQAIPI---GMKGK---DMIGQAQTGTGKTTAFGVPLLEQIDLNEGIQGLVLAP 58

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E + +  Q   +    + G      + +AL++      HII  T     D 
Sbjct: 59  TRELAVQVAEELNRIGQVKGVRTLPVYGGQDITRQIRALKK----HPHIIAATPGRLIDH 114

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         + L +        +L        +TL+ ++     I  + 
Sbjct: 115 IERKTIRLSNIKMVVLDEADEMLNMGFIEDIERILSEIKG-ERQTLLFSATMPKRIQSLA 173

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRS 502
           EK   ++P    +       + IE+  + + E +K   +C  ++ +            + 
Sbjct: 174 EKFM-QEPEMVKVKAKEMTVKNIEQYYMEVHEKQKFDVLCNLLDIQSPELAIVFGRTKKR 232

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           V E    L +   S+  I HG +    ++ V+  FK  T  +++AT V   G+D+   S 
Sbjct: 233 VDEVVEGLIKRGYSAEGI-HGDIPQAKRDQVIRRFKEQTIDIMVATDVAARGLDISGVSH 291

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP------------LSKNSYTRLSV 610
           +   +      + +H++ GR GR       I    P              SK +   +  
Sbjct: 292 VYNFDIPQDPESYVHRI-GRTGRAGNKGLAITFVSPREIDHLKIIESVTKSKMAKKPVPS 350

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK-----DAKH 665
            K+   G   A       K  E+  I++     F      + +SLLE          A  
Sbjct: 351 FKDVVAGNQQAT----INKLMEV--IEKEEHADFKR----VAESLLEDTDSVTLLAAAIK 400

Query: 666 ILTQDPDLTSVRGQSIR 682
           +LT+ PD+T V+  ++ 
Sbjct: 401 LLTKGPDVTPVKLTAVE 417


>gi|221105444|ref|XP_002161749.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 1335

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 88/449 (19%), Positives = 172/449 (38%), Gaps = 47/449 (10%)

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE--LLAGQIALLLMRKQFKK 249
            ++ +KK   ++A+    I+ P   + F    P   ++  +E  L    +  + +R +   
Sbjct: 611  EVRKKKKELTVAD-HTKIYYPPFRRAFYVEVPELAKMTQEEVKLYRESLGDIQVRGKSIP 669

Query: 250  EIGIPINVEGKIAQKI--LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            +     +  G   + +  L+ + +  PT  Q  AI  I+           I     GSGK
Sbjct: 670  KPIKTWSQAGVSTKVLAVLKKLKYEKPTPIQAQAIPAIMSGRD------LIGIAKTGSGK 723

Query: 307  TLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            TL  LI +   V          G  A+IM P   LA Q +   KK+ +   +    I G 
Sbjct: 724  TLAFLIPLFRHVIDQPPLDENDGPIAIIMTPTRELALQIFREAKKFCKQLNLTAACIYGG 783

Query: 359  MPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQ 410
               + +   L++     A II+ T     D +           +   +++DE  R     
Sbjct: 784  SGISEQIAELKK----GAEIIVCTPGRMIDMLTANNGRVTNCRRCTYLVMDEADRMFDMG 839

Query: 411  RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
                         +L    P  +T++ ++     +  I  K    KPI+  +   + +  
Sbjct: 840  FEPQVM------RILDNIRPDRQTVLFSATFPRQMEAIARKVLN-KPIEVQVGGRSVVCS 892

Query: 471  VIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHG 523
             +E+  +V+ E  K + +   +   +E      F    E  + L +    +      +HG
Sbjct: 893  DVEQHALVIEEENKFFKLLELLGVYQEKGSVLVFVEKQESADMLFKDLLKNAYPCLSLHG 952

Query: 524  RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
             M   D++S +  FKNG  KL+++T+V   G+DV +  +++  +  +     +H++ GR 
Sbjct: 953  GMDQFDRDSTIADFKNGVTKLMVSTSVAARGLDVKNLVLVLNYDCPNHYEDYVHRV-GRT 1011

Query: 584  GRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GR     +      P   +N+   +   +
Sbjct: 1012 GRAGNKGTSFTFITPEQGRNAGDIIKAFE 1040


>gi|227522395|ref|ZP_03952444.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii
           ATCC 8290]
 gi|227090453|gb|EEI25765.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii
           ATCC 8290]
          Length = 502

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 127/346 (36%), Gaps = 35/346 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAV 325
            F   T  Q   I  +L           I Q   G+GKT    + +   ++      QA+
Sbjct: 20  GFEEATPIQAETIPMVLNGEDV------IGQAQTGTGKTAAFALPILQHLDFNNPNVQAL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I++P   LA Q  E + +  ++ +  V+++ G      +  +L+        II+GT   
Sbjct: 74  IISPTRELAIQTQEEVYRLGKDEKAKVQVVYGGADIRRQINSLKS----HPQIIVGTPGR 129

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT- 434
             D I  + L L  V        DE    G    +   + Q  +    LL +AT  P+  
Sbjct: 130 ILDHISRHTLKLEHVKTLVLDEADEMLNMGFLDDIESIIKQTPSDRQTLLFSATMPPQIK 189

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + +  + D    KI  K      I    + +   ++     +    +  +   +  +  
Sbjct: 190 RVGVQFMKDPHQVKIKAKELTTDLIDQYYVRVKEYEKFDTMTRFFDVQDPEVTIVFCRT- 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+  +   E    + A +HG ++   +  +M+ FK G   +L+AT V   
Sbjct: 249 -------KRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIMNEFKQGKVDILVATDVAAR 301

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GID+   + +   +        +H++ GR GR  +    I    P 
Sbjct: 302 GIDISGVTHVYNYDIPQDPDGYVHRV-GRTGRAGKHGVSITFTTPN 346


>gi|47221754|emb|CAG08808.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1046

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 142/368 (38%), Gaps = 41/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  AI  ++           I     GSGKT+  L+ M   +          G  
Sbjct: 365 KPTPIQAQAIPAVMSGRD------LIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPI 418

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AVIM P   LA Q  +  KK+++   + V  + G    + +   L+R     A II+ T 
Sbjct: 419 AVIMTPTRELALQITKECKKFSKPLGLRVVCVYGGTGISEQIAELKR----GAEIIVCTP 474

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +           ++  V++DE  R                  ++ +  P  +T+
Sbjct: 475 GRMIDMLGANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVM------RIVDSVRPDRQTV 528

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     +  +  +    KPI+  +   + +   +E+  +V+ E  K   +   +   
Sbjct: 529 MFSATFPRAMEALARRILN-KPIEVQVGGRSVVCSDVEQHVLVIEEDNKFLKLLELLGHY 587

Query: 496 KES----NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +E      F    E  + L +    +      +HG +   D++S+++ FK+G C+L++AT
Sbjct: 588 QERGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKSGACRLMVAT 647

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           +V   G+DV    +++  N  +     +H+  GR GR               ++ +   +
Sbjct: 648 SVAARGLDVKQLILVVNYNCPNHYEDYVHR-AGRTGRAGNKGFAYTFITEDQARYAGDII 706

Query: 609 SVLKNTED 616
             L+ +  
Sbjct: 707 KALELSGS 714


>gi|294665477|ref|ZP_06730761.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292604731|gb|EFF48098.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 648

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 139/369 (37%), Gaps = 35/369 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q + I  +L           + Q   G+GKT    + + +  +      QA+++A
Sbjct: 47  SPSPIQAATIPALLAGRDV------LGQAQTGTGKTAAFALPVLSNADLNQVKPQALVLA 100

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY +      V  + G  P A +  AL+R      H+++GT     
Sbjct: 101 PTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR----GVHVVVGTPGRVI 156

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP--RTL 435
           D +        Q   L+L   DE  R G    ++  L +      V L +AT  P  R +
Sbjct: 157 DHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATMPPAIRRI 216

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E      I  + +  
Sbjct: 217 AQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFARTKAA 276

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E       E    L     ++ AI +G M    +E  +   K+G   +L+AT V   G+
Sbjct: 277 TE-------ELAQKLQARGMAAAAI-NGDMQQAAREKTIAQLKDGKLDILVATDVAARGL 328

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P       +     +   
Sbjct: 329 DVERISHVLNYDIPYDTESYVHRI-GRTGRAGRNGDAILFVTPREKGMLRSIERATRQPI 387

Query: 616 DGFLIAEED 624
           +   +   D
Sbjct: 388 EEMQLPSVD 396


>gi|52545677|emb|CAH10627.2| hypothetical protein [Homo sapiens]
          Length = 652

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 157/450 (34%), Gaps = 60/450 (13%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 39  RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 93

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 147

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 148 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 207

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 208 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 263

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 264 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 323

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 324 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 375

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEV--GIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            +++ V++ F++G   +LIAT V     G+DV D   +I  +  +     +H++ GR  R
Sbjct: 376 PERDWVLNEFRSGKAPILIATDVASRGLGLDVEDVKFVINYDYPNSSEDYVHRI-GRTAR 434

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
                +    + P   K +   + VL+   
Sbjct: 435 STNKGTAYTFFTPGNLKQARELIKVLEEAN 464


>gi|254229148|ref|ZP_04922567.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262395499|ref|YP_003287352.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151938233|gb|EDN57072.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262339093|gb|ACY52887.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 419

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/362 (19%), Positives = 143/362 (39%), Gaps = 40/362 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-----QAVI 326
           +PT  QE +I  +L+          +     G+GKT    + +   V+        QA++
Sbjct: 25  TPTPVQEKSIPHVLEGK------NLLAAAQTGTGKTAAFGLPIIQTVQQKKLNGTPQALV 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ ++ + +Y+  T++ +  + G      +++ LE      A I+I T    
Sbjct: 79  LVPTRELAQQVFDNLNQYSAQTELRIVCVYGGTSIGVQKRKLEE----GADILIATPGRL 134

Query: 387 QDSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLV 436
            D +        +   L+L   D     G    L+    +      +LL +AT   R   
Sbjct: 135 LDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQILLFSATFEKRIKT 194

Query: 437 LTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +         ++   PA      +K ++ P+++  +      ++ S   +   +  + ++
Sbjct: 195 IAYKLMESPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQVLVFTKTKQ 254

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             +       E    L      +++I +G  S   ++  +D FK G  + LIAT V   G
Sbjct: 255 GSD-------ELAKELKLDGIKAVSI-NGDKSQGARQRALDEFKQGKVRALIATDVAARG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+ +   ++  +        +H++ GR GR  +    + L    +S++    L  ++N 
Sbjct: 307 LDIQELEQVVNFDMPFKAEDYVHRI-GRTGRAGKSGLAVSL----MSRDEEYLLHAIENL 361

Query: 615 ED 616
            D
Sbjct: 362 LD 363


>gi|323490311|ref|ZP_08095526.1| ATP-dependent RNA helicase [Planococcus donghaensis MPA1U2]
 gi|323395981|gb|EGA88812.1| ATP-dependent RNA helicase [Planococcus donghaensis MPA1U2]
          Length = 481

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 140/373 (37%), Gaps = 44/373 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           L  + +  PT+ QE  I   L       +    ++   GSGKT    I +   V   E  
Sbjct: 19  LDGLGYTEPTEVQEKVIPVALS------KTDLTVKSQTGSGKTAAFGIPICELVDWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E I    +  +I    + G  P A+++  L++    + H+++G
Sbjct: 73  PQALILTPTRELADQVKEDITNIGRFKRIKAAAVYGKQPFAYQQAELKQ----KCHVVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I+   L L  +        DE    G  ++++                P  R
Sbjct: 129 TPGRVLDHIERGTLKLEQIEYLVLDEADEMLNMGFVEQVESIINK----------LPKQR 178

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQ 491
           T +L S    +  +  +K     P    I     + + I+    V++E KK   +     
Sbjct: 179 TTMLFSATLPENVEKLQKKYMIDPQHIEIASTETLTDQIDHSLFVVAEQKKFSLLRDVTI 238

Query: 492 IEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           IE           +  V+      E    +   +HG M   D+ +VM+ FK G  + L+A
Sbjct: 239 IENPDSCIIFCRTKDNVDFVMEQLEKHYYTCDKLHGGMLQEDRTAVMNEFKRGEFRYLVA 298

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+   + +I  +      + +H+  GR GR  +    I    P   K     
Sbjct: 299 TDVAARGIDIDSITHVINFDLPMEKESYVHR-SGRTGRAGKTGKAISFVTPNEDKFLAEI 357

Query: 608 LSVLKNTEDGFLI 620
            S +     GF I
Sbjct: 358 ESYI-----GFEI 365


>gi|294625117|ref|ZP_06703762.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292600581|gb|EFF44673.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 648

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/450 (20%), Positives = 161/450 (35%), Gaps = 45/450 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q + I  +L           + Q   G+GKT    + + +  +      QA+++A
Sbjct: 47  SPSPIQAATIPALLAGRDV------LGQAQTGTGKTAAFALPVLSNADLNQVKPQALVLA 100

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY +      V  + G  P A +  AL+R      H+++GT     
Sbjct: 101 PTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR----GVHVVVGTPGRVI 156

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP--RTL 435
           D +        Q   L+L   DE  R G    ++  L +      V L +AT  P  R +
Sbjct: 157 DHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATMPPAIRRI 216

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E      I  + +  
Sbjct: 217 AQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFARTKAA 276

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E       E    L     ++ AI +G M    +E  +   K+G   +L+AT V   G+
Sbjct: 277 TE-------ELAQKLQARGMAAAAI-NGDMQQAAREKTIAQLKDGKLDILVATDVAARGL 328

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P       +     +   
Sbjct: 329 DVERISHVLNYDIPYDTESYVHRI-GRTGRAGRNGDAILFVTPREKGMLRSIERATRQPI 387

Query: 616 DGFLIAEED-----LKQRKEGEILGIKQSGMPKFLIAQPELHDS-----LLEIARKDAKH 665
           +   +   D        R    I      G         + +++      ++IA   AK 
Sbjct: 388 EEMQLPSVDAVNDTRVARFMTRITETLAGGQIDMYRDLLQRYEAENNVPAIDIAAALAKL 447

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           +    P L +   +  R      + +E   
Sbjct: 448 LQGDAPFLLTPPVRGAREDTAPRERHERAD 477


>gi|167945236|ref|ZP_02532310.1| ATP-dependent DNA helicase RecG [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 233

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/232 (34%), Positives = 132/232 (56%), Gaps = 8/232 (3%)

Query: 176 VEALSRLPVLP----EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKD----FEWTSPARER 227
            + L+ L   P    E + + L Q  + P + +A   +H P          E   PA++R
Sbjct: 2   EQVLALLETEPKDLTELLPEPLRQGLAMPDLRQAILYLHRPPPDAPQPLLLEGAHPAQQR 61

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           L ++ELLA QI+L  +R+Q ++     +  +G++ + +L  +PF  T +Q+  + +I +D
Sbjct: 62  LTFEELLAHQISLRELRQQQRQTRAPALLGDGRLRRPLLAQLPFELTAAQQRVVGEIERD 121

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
           +++   M R++QGDVG GKT+VA +    AVEAG Q  +MAP  +LA+QH    +++ + 
Sbjct: 122 LAEPVPMQRLVQGDVGCGKTIVAALTALQAVEAGLQVALMAPTELLAEQHLRSFRQWLEP 181

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399
             + +  ITG +    R   LERIA G+A +++GTHALFQD + +  L LVI
Sbjct: 182 LDLNIAWITGRLKGKAREAQLERIAQGEAQLVVGTHALFQDDVLFAGLGLVI 233


>gi|73969111|ref|XP_850120.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 2 [Canis
           familiaris]
          Length = 652

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 157/450 (34%), Gaps = 60/450 (13%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 39  RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 93

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 147

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 148 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 207

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 208 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 263

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 264 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 323

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 324 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 375

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEV--GIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            +++ V++ F++G   +LIAT V     G+DV D   +I  +  +     +H++ GR  R
Sbjct: 376 PERDWVLNEFRSGKAPILIATDVASRGLGLDVEDVKFVINYDYPNSSEDYVHRI-GRTAR 434

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
                +    + P   K +   + VL+   
Sbjct: 435 STNKGTAYTFFTPGNLKQARELIKVLEEAN 464


>gi|327540357|gb|EGF26943.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47]
          Length = 862

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 77/360 (21%), Positives = 134/360 (37%), Gaps = 39/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            PT  Q   I  +L           + Q   G+GKT    + + + V+      Q +++A
Sbjct: 257 KPTPIQAEIIPYMLDGRDV------LAQSQTGTGKTAAFALPILSRVDVRSRRPQVLVLA 310

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q      KY  + +   V  I G      + K L R       +++GT     
Sbjct: 311 PTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRR----GVQVVVGTPGRVI 366

Query: 388 DSIQYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTL 435
           D ++   L        +L   DE    G     +  L +      V L +AT P P R +
Sbjct: 367 DHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVALFSATLPKPIRKI 426

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D     I  K      ++   + ++  D++    +++  E      +  + ++ 
Sbjct: 427 ADEYLNDPARITIKSKTITAASVRQRALFVSPRDKIDALTRILEVEETDGVIVFTKTKDS 486

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             S           L +   S+IA+ +G M    +E  +D  K G   +L+AT V   G+
Sbjct: 487 TLS-------VAEKLSQQGFSAIAL-NGDMPQKVRERTIDQLKRGQLDVLVATDVAARGL 538

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S +   +  H   + +H++ GR GR       I+     L+     +L  ++NT 
Sbjct: 539 DVPRISHVFNFDLPHDSESYVHRI-GRTGRAGRSGQAIIF----LTNAQRRQLRFIENTT 593


>gi|241762057|ref|ZP_04760141.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373523|gb|EER63110.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 506

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/354 (20%), Positives = 144/354 (40%), Gaps = 29/354 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLR--ILQGDVGSGKTLVALIAMAAAVEAG------GQ 323
            PT  Q +AI  +L        M+R  I     G+GKT   ++ M   +  G       +
Sbjct: 37  EPTPVQATAIPSVL--------MMRDLIAVAQTGTGKTASFVLPMIDILAHGRCRARMPR 88

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           ++I+ P   LA Q  E  +KY +  ++ + ++ G +P A ++ ALE+       ++I T 
Sbjct: 89  SLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEK----GVDVLIATP 144

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D  +  K++L    E        R+           +        +TL+ ++    
Sbjct: 145 GRLLDLFERGKILLSSC-EMLVIDEADRMLDMGFIPDIETICTKLPTSRQTLLFSATMPP 203

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------ 497
            I K+ ++     P +  I      + +I++  + +S   K   +C  +  +K+      
Sbjct: 204 AIKKLADRFL-SNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDMLRAEKDHTAIIF 262

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N ++ V +  +  E    S+  IHG MS  ++ S ++ FKNG   +L+A+ +   G+DV
Sbjct: 263 CNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVASDIAARGLDV 322

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              S +   +        +H++ GR GRG      +    P   +       ++
Sbjct: 323 KGISHVFNFDVPTHPDDYIHRI-GRTGRGGASGEALTFVTPADEEAIAAIEKLM 375


>gi|134102495|ref|YP_001108156.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|291004114|ref|ZP_06562087.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915118|emb|CAM05231.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 578

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 154/420 (36%), Gaps = 37/420 (8%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           ++++ ++ Q +      +P+  Q   I  +L+     + ++ + Q   G+GKT    + +
Sbjct: 7   LDLDPRVLQVLSEIGYETPSPIQAQTIPPLLEG----HDVMGLAQ--TGTGKTAAFALPI 60

Query: 315 AAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALER 370
            + ++      QA+++AP   LA Q  E  ++Y  +     V  I G      +   L+R
Sbjct: 61  LSRLDLDAKTPQALVLAPTRELAIQVAEAFQRYAAHLPGFHVLPIYGGQSYGPQLAGLKR 120

Query: 371 IAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATA 420
                AH+++GT     D +            L+L   DE  R G  + +   L      
Sbjct: 121 ----GAHVVVGTPGRVIDHLNKGSLDLTGLKNLVLDEADEMLRMGFIEDVETILQSVPEQ 176

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK--TVIIPINRIDEVIERLKVV 478
             V L +AT  P+   ++     +  +I+ K             IP+    ++    +++
Sbjct: 177 RQVALFSATMPPQIRKISQSYLNEPVEISVKTKTTTATNITQRYIPVRGPAKLDALTRIL 236

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
             E   A  +  +         + + E      +    S A I+G +    +E  +   +
Sbjct: 237 EVETFDAMIVFVRT--------KQLTEELAEKLQARGFSAAAINGDIPQAARERTIGHLR 288

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+AT V   G+DV   S ++  +  H   + +H++ GR GR       IL   P
Sbjct: 289 EGRVDILVATDVAARGLDVERISHVLNYDIPHDSESYVHRI-GRTGRAGRSGEAILFVSP 347

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
                  +     + +     +    ++   +  +    Q           EL   L+E 
Sbjct: 348 RERHMLRSIEKATRQSIGQMELPS--IEAVNDQRLAKFAQGITDTLAKGDLELFKGLVEE 405


>gi|154253690|ref|YP_001414514.1| DEAD/DEAH box helicase domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154157640|gb|ABS64857.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 504

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/359 (19%), Positives = 131/359 (36%), Gaps = 35/359 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  +L           +     G+GKT    + M   +  G       +++
Sbjct: 23  EPTPIQAQAIPHVLAGRDV------LGIAQTGTGKTASFTLPMIDKLSRGRARARMPRSL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  + Y +  ++ + ++ G +    + K L+R       ++I T   
Sbjct: 77  ILEPTRELAAQVAENFETYGKYNKLSMALLIGGVSFGDQEKKLDR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D     K++L  V     DE  R      +   ++      +        +TL  ++ 
Sbjct: 133 LLDHCNRGKVLLTGVQILVIDEADRMLDMGFIPDIEE------ICKKLPFTRQTLFFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
              +I ++T+      P +  +   +     I+++ +  +   K   +   IEE    N 
Sbjct: 187 MPPEIQRLTDTFL-HNPERIEVARASSTSANIKQVLLKTTRDGKRDVLQRMIEEDNVKNA 245

Query: 501 RSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                R                S   IHG +    +   +D F+NGT +LL+A+ V   G
Sbjct: 246 IIFCNRKRDVSVLERALSKSGLSAGAIHGDLDQSTRTRTLDGFRNGTIRLLVASDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           +D+ D S +   +        +H++ GR GR  +  + + L      K       ++ N
Sbjct: 306 LDIPDVSHVFNYDVPSHAEDYVHRI-GRTGRAGKSGTAVTLSTREDGKYLAAIEKLIGN 363


>gi|108800931|ref|YP_641128.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119870071|ref|YP_940023.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           KMS]
 gi|126436556|ref|YP_001072247.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           JLS]
 gi|108771350|gb|ABG10072.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. MCS]
 gi|119696160|gb|ABL93233.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. KMS]
 gi|126236356|gb|ABN99756.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. JLS]
          Length = 557

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 66/336 (19%), Positives = 130/336 (38%), Gaps = 22/336 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q + I  +L           +     G+GKT    I + + ++      QA+++A
Sbjct: 35  TPSAIQAATIPAMLAG------SDVVGLAQTGTGKTAAFAIPILSKIDPNSRATQALVLA 88

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   +Y  +  + V  + G      +   L+R     A +++GT     D
Sbjct: 89  PTRELALQVAEAFGRYGAHLPVNVLPVYGGSSYGPQMAGLKR----GAQVVVGTPGRVID 144

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++   L L  +D        + L++        +L  + TP  + + L S       K 
Sbjct: 145 HLEKGSLDLSHLDYMVLDEADEMLQMGFAEDVERIL--SDTPEYKQVALFSATMPPGIKK 202

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------RS 502
             K     P++  +    +  E I +  + +S  +K   +   +E ++          + 
Sbjct: 203 ITKKYLHDPVEVTVKSKTQTAENITQRYIQVSYPRKMDALTRLLETEQGDGMIVFVRTKQ 262

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             E           + A I+G +    +E  +   K+G+  +L+AT V   G+DV   S 
Sbjct: 263 ATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDGSIDILVATDVAARGLDVERISH 322

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ++  +  H   + +H++ GR GR     + +L   P
Sbjct: 323 VVNFDIPHDPESYVHRI-GRTGRAGRSGTALLFVTP 357


>gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 515

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 131/346 (37%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
           +P+  Q  AI  +LQ          +     G+GKT    + M   +  G        +A
Sbjct: 23  TPSPIQAQAIPAVLQGKDV------MAAAQTGTGKTAGFTLPMLELLSKGNRAQAGQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +N  +   +I G +P   +   L         +++ T  
Sbjct: 77  LVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRH----GVDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 133 RLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRK-------ILAILPKQRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +++    + + +K+  +   I++     
Sbjct: 186 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   +  FKNG  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+     ++  +  +     +H++ GR GR       + L    
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGQAVSLVSNE 350


>gi|271500546|ref|YP_003333571.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270344101|gb|ACZ76866.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 457

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 90/462 (19%), Positives = 177/462 (38%), Gaps = 66/462 (14%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + S T  Q +A+  IL     +       Q   GSGKT    + +   ++AG   
Sbjct: 18  LNELGYLSMTPIQAAALPAILAGKDVR------AQAKTGSGKTAAFGLGLLQHLDAGQFK 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +    I V ++ G +P + +R +L        HII+
Sbjct: 72  TQSLVLCPTRELADQVANELRRLARGMPNIKVLVLCGGVPFSIQRDSLIHA----PHIIV 127

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            T     D ++           L+L   D     G    +           ++  A    
Sbjct: 128 ATPGRLLDHLKKETVSLDALQTLVLDEADRMLDMGFADAI---------DEVIHHAPAER 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I+ I+ +   R P+   I  ++ +   +E+    +S   K   +   +
Sbjct: 179 QTLLFSATWPEAIAAISRR-IQRDPLVIEIDTVDELP-AVEQQFYEVSRNGKLDLLQKLL 236

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             ++        N +   +       H   S+  +HG M   D++  +  F NG+ ++L+
Sbjct: 237 SREQPASCVVFCNTKKDCQAVYDALTHSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLV 296

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+    ++I           +H++ GR  R  E    I L  P  ++ +  
Sbjct: 297 ATDVAARGLDIKALEMVINYELSWDPEVHVHRI-GRTARAGEQGLAISLCAPEEAQRANA 355

Query: 607 RLSVLK------NTEDGFLI-----AEEDL--------KQRKEGEILG--IKQSGMPKFL 645
              +LK          G  I     A   L        K R  G+ILG      G+    
Sbjct: 356 LEEMLKMKLTWHPLPSGLRITPLEAAMATLCIDGGKKAKMR-PGDILGALTGDMGLDGAD 414

Query: 646 IAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           I +  +H   + + + +  A+ +  Q      ++G+++++ L
Sbjct: 415 IGKITIHPMHAYVAVKQSLARQVWKQL-QQGKIKGKAVKVRL 455


>gi|227509297|ref|ZP_03939346.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227512309|ref|ZP_03942358.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
 gi|227084484|gb|EEI19796.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
 gi|227191227|gb|EEI71294.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 502

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 127/346 (36%), Gaps = 35/346 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAV 325
            F   T  Q   I  +L           I Q   G+GKT    + +   ++      QA+
Sbjct: 20  GFEEATPIQAETIPMVLNGEDV------IGQAQTGTGKTAAFALPILQHLDFNNPNVQAL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I++P   LA Q  E + +  ++ +  V+++ G      +  +L+        II+GT   
Sbjct: 74  IISPTRELAIQTQEEVYRLGKDEKAKVQVVYGGADIRRQINSLKS----HPQIIVGTPGR 129

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT- 434
             D I  + L L  V        DE    G    +   + Q  +    LL +AT  P+  
Sbjct: 130 ILDHISRHTLKLEHVKTLVLDEADEMLNMGFLDDIESIIKQTPSDRQTLLFSATMPPQIK 189

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + +  + D    KI  K      I    + +   ++     +    +  +   +  +  
Sbjct: 190 RVGVQFMKDPHQVKIKAKELTTDLIDQYYVRVKEYEKFDTMTRFFDVQDPEVTIVFCRT- 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+  +   E    + A +HG ++   +  +M+ FK G   +L+AT V   
Sbjct: 249 -------KRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIMNEFKQGKVDILVATDVAAR 301

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GID+   + +   +        +H++ GR GR  +    I    P 
Sbjct: 302 GIDISGVTHVYNYDIPQDPDGYVHRV-GRTGRAGKHGVSITFTTPN 346


>gi|116329398|ref|YP_799118.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330001|ref|YP_799719.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116122142|gb|ABJ80185.1| ATP-dependent RNA helicase (superfamily II) [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116123690|gb|ABJ74961.1| ATP-dependent RNA helicase (superfamily II) [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 513

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 137/385 (35%), Gaps = 41/385 (10%)

Query: 262 AQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE- 319
            Q  +  + F   +  Q  AI  IL+          I     G+GKT    I     +E 
Sbjct: 15  IQNAILEMGFEEASPIQSEAIPVILKGKD------IIGHAQTGTGKTAAFAIPAIELLEV 68

Query: 320 --AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQA 376
                QA+I+ P   L  Q  E  +K  +      V  + G      + KAL +      
Sbjct: 69  ESKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKALRK----NP 124

Query: 377 HIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            I+I T     D ++   + L  +        DE    G ++ ++   K T         
Sbjct: 125 QIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEMLDMGFREDMEFILKDTPID------ 178

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +T++ ++    DI  + ++     P    +         IE++   + E  K   +
Sbjct: 179 ---RQTIMFSATMTEDILTLMKRFQKH-PQIIDVTHQKLSAPKIEQIYYEIQENAKGEAL 234

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              IE +         N ++ V+    L +        +HG ++   ++ VM+ F+NG  
Sbjct: 235 ARLIEYRNVKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNI 294

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+AT V   GIDV +   +   +    G   +H++ GR GR  +              
Sbjct: 295 EILVATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRI-GRTGRAGKKGIAFSFIVGKQIY 353

Query: 603 NSYTRLSVLK-NTEDGFLIAEEDLK 626
           N      +     E G +   +DL+
Sbjct: 354 NLKKIERINGIKIEAGKIPTLDDLE 378


>gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 525

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 131/346 (37%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
           +P+  Q  AI  +LQ          +     G+GKT    + M   +  G        +A
Sbjct: 34  TPSPIQAQAIPAVLQGKDV------MAAAQTGTGKTAGFTLPMLELLSKGNRAQAGQVRA 87

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +N  +   +I G +P   +   L         +++ T  
Sbjct: 88  LVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRH----GVDVLVATPG 143

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 144 RLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRK-------ILAILPKQRQNLMFS 196

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +++    + + +K+  +   I++     
Sbjct: 197 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQ 256

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   +  FKNG  ++L+AT +   
Sbjct: 257 VLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAAR 316

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+     ++  +  +     +H++ GR GR       + L    
Sbjct: 317 GLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGQAVSLVSNE 361


>gi|323491514|ref|ZP_08096694.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
 gi|323314239|gb|EGA67323.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
          Length = 643

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 88/441 (19%), Positives = 162/441 (36%), Gaps = 55/441 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q +AI  +L           + +   G+GKT    + +   ++      QA+++A
Sbjct: 28  SPTPIQAAAIPHLLAGKD------ALGKAQTGTGKTAAFSLPLLNKLDLAQRKPQAIVLA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   +N   + V  I G      + +AL       AHI++GT    Q
Sbjct: 82  PTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRAL----KNGAHIVVGTPGRVQ 137

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQR--LKLTQKATAPHVLLMTAT--PIPRTL 435
           D I   +L L  V        DE    G        +     +   +L +AT  P+ +++
Sbjct: 138 DLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQRVLFSATMPPMLKSI 197

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           V   L D +   +  K      ++     +  +++     +++ +E   A  +  +    
Sbjct: 198 VERFLRDPETIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVFVRT--- 254

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                R   ER            + +HG +    +E  +D  K G   +L+AT V+  G+
Sbjct: 255 -----RQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGL 309

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   + +   +      + +H++ GR GR       ILL      +   T   V K++ 
Sbjct: 310 DVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSSM 368

Query: 616 DGFLIAEED------LKQRKEGEILGIKQS-------GMPKFLIAQPELHDSLLEI---A 659
           +   +   D      L +    E+   K+         +   L    EL  + L      
Sbjct: 369 EEIQLPHRDKVAEARLAKLGA-ELETEKEHKALEKFAELVDKLQESLELDAATLAAILLK 427

Query: 660 RKDAKH---ILTQDPDLTSVR 677
           R+  K     + +DP + ++ 
Sbjct: 428 RQQGKRPLFYIGEDPMIEAIE 448


>gi|156367199|ref|XP_001627306.1| predicted protein [Nematostella vectensis]
 gi|156214212|gb|EDO35206.1| predicted protein [Nematostella vectensis]
          Length = 669

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 152/444 (34%), Gaps = 55/444 (12%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRK--------QFKKEIGIPINVEGKIAQK 264
              +D+    P  ER+  D   +    +   +           +    I +  +  + + 
Sbjct: 143 HPPEDWSKLQPKNERVERDLFASHNTGINFEKYDDIPVEATGQECPKNIELFEDVDLGEI 202

Query: 265 ILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-E 319
           +L N+       PT  Q+ AI  +      K +   +     GSGKT   LI + + +  
Sbjct: 203 LLHNVGLAGYKKPTPVQKYAIPIV------KGKRDLMACAQTGSGKTAAFLIPILSRIYM 256

Query: 320 AGGQA----------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
            G  A                +++AP   LA Q ++  +K++  +     ++ G      
Sbjct: 257 EGPPAPPDIKHAGRRRQYPICLVLAPTRELAVQIFDEARKFSYRSLCRPCVVYGGADIGS 316

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKA 418
           + + L+R      H+++ T     D +   ++ L  +     DE  R          Q  
Sbjct: 317 QLRELDR----NCHLLVATPGRLVDMMDRGRVGLDSIRFLVLDEADRMLDMGFEP--QIR 370

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                  M  T I +TL+ ++    +I  +  +      I   +  +    E I +  V 
Sbjct: 371 RIVDQDSMPKTGIRQTLMFSATFPKEIQMLA-RDFLENYIFLAVGKVGSTSENITQKVVW 429

Query: 479 LSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
           + E  K  ++   +               +   +               IHG  S  ++E
Sbjct: 430 VDEFDKRSFLLDLLNASGPQQLTLVFVETKKGADALEMFLAKDGYYCTSIHGDRSQRERE 489

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             + +F+ G   +L+AT V   G+D+ +   +I  +        +H++ GR GR      
Sbjct: 490 EALRTFRCGDTPILVATAVAARGLDIPNVKHVINFDLPTDIEEYVHRI-GRTGRVGHTGL 548

Query: 592 CILLYHPPLSKNSYTRLSVLKNTE 615
               ++      +   + +L+ ++
Sbjct: 549 ATSFFNHKNKNVAKELMDILEESK 572


>gi|143361556|sp|Q5QMN3|RH20_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 20
          Length = 494

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 135/362 (37%), Gaps = 37/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L+          I   + GSGKTL  L+     V A        G  
Sbjct: 113 EPTPIQSQGWPMALRGRD------LIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPI 166

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +   K+  +++I    I G +P+  + + L++       I+I T 
Sbjct: 167 VLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQK----GVEIVIATP 222

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D I+       ++  +++DE  R          +K  +         P  +TL  +
Sbjct: 223 GRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIR------PDRQTLYWS 276

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +    ++ ++            +     + +  I +   +LSE +K   +   +E+  + 
Sbjct: 277 ATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLVNLLEDIMDG 336

Query: 498 ------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  + +   ++              IHG  S  +++ V+  FK+G   ++ AT V 
Sbjct: 337 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVA 396

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D   +I  +        +H++ GR GR     +    +    ++ +   +++L
Sbjct: 397 ARGLDVKDVKYVINYDFPGSLEDYVHRI-GRTGRAGAKGTAYTFFTAANARFAKDLINIL 455

Query: 612 KN 613
           + 
Sbjct: 456 EE 457


>gi|45358020|ref|NP_987577.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis S2]
 gi|44920777|emb|CAF30013.1| Probable ATP dependent RNA helicase [Methanococcus maripaludis S2]
          Length = 538

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 75/362 (20%), Positives = 130/362 (35%), Gaps = 42/362 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT  QE AI  +++      +   + Q   G+GKT    I +   ++      QA+I+AP
Sbjct: 25  PTPIQEQAIPILIEG-----KRDIVGQAQTGTGKTAAFGIPILETIDEHSRNTQALILAP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I     + ++ V  + G      + + L R       I++GT     D 
Sbjct: 80  TRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRELRR----GVQIVVGTPGRILDH 135

Query: 390 IQYYKLILVIV--------DEQHRFGVQQR--LKLTQKATAPHVLLMTATPIPRTLVLTS 439
           I    + L  V        DE    G        L   +T   +LL +AT     + L  
Sbjct: 136 ISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLLFSATLPDSIMKLAK 195

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               +   I  K        T            ++    +    K   +   I+ +KE  
Sbjct: 196 NYMREYDIIKVKRQQLTTTLT------------DQSFYEIHSRDKFELLSRIIDTEKEFY 243

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  ++ V+   +       +   +HG M+   +E  +D FK     +L+AT V   
Sbjct: 244 GLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVAAR 303

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+ D + ++  +      + +H++ GR GR  +    I    P      +  +  +  
Sbjct: 304 GIDINDLTHVVNFDIPQNPESYVHRI-GRTGRAGKQGYAITFVEPSE-FRKFKYIQKIAK 361

Query: 614 TE 615
           TE
Sbjct: 362 TE 363


>gi|304411082|ref|ZP_07392698.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307301795|ref|ZP_07581553.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304350617|gb|EFM15019.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913833|gb|EFN44254.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 515

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 131/346 (37%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
           +P+  Q  AI  +LQ          +     G+GKT    + M   +  G        +A
Sbjct: 23  TPSPIQAQAIPAVLQGKDV------MAAAQTGTGKTAGFTLPMLELLSKGNRAQAGQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +N  +   +I G +P   +   L         +++ T  
Sbjct: 77  LVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRH----GVDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 133 RLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRK-------ILAILPKQRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +++    + + +K+  +   I++     
Sbjct: 186 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   +  FKNG  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+     ++  +  +     +H++ GR GR       + L    
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGQAVSLVSNE 350


>gi|295689524|ref|YP_003593217.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295431427|gb|ADG10599.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 524

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/362 (20%), Positives = 128/362 (35%), Gaps = 36/362 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVIM 327
           T  Q  AI   L           +     G+GKT    + +   +++G       +A+++
Sbjct: 26  TPIQAQAIPVALAGQDV------LGIAQTGTGKTAAFTLPLIDKLQSGRAKARMPRALVI 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA Q     +KY + T++   ++ G +    + K L+R       ++I T     
Sbjct: 80  APTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQEKKLDR----GVDVLIATPGRLL 135

Query: 388 DSIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           D  +  KL++  V        D     G                  L  +AT  P    L
Sbjct: 136 DHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTLFFSATMPPEITRL 195

Query: 438 TSLGDIDISKIT-EKPAGRKPIKT--VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           T     D  +I   +PA      T  ++   +   +        L E  +          
Sbjct: 196 TKQFLRDPVRIEVARPATTNANITQLLVKVPSSDPKAKRLALRALIEKAQIETGIVFCNR 255

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           K E +         SL  H   + A IHG +    +   +  F++G  K+L+A+ V   G
Sbjct: 256 KTEVDI-----VAKSLKVHGYDA-APIHGDLDQTQRMKTLADFRSGALKILVASDVAARG 309

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+   S +   +  H     +H++ GR GR        +L  P   K     + ++ +T
Sbjct: 310 LDIPAVSHVFNYDVPHHADDYVHRI-GRTGRAGRTGITYMLVTPADDKGFDKVVKLIGST 368

Query: 615 ED 616
            D
Sbjct: 369 PD 370


>gi|258624003|ref|ZP_05718956.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
 gi|258583797|gb|EEW08593.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
          Length = 663

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 29/398 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +   +   QA++MA
Sbjct: 48  SPTPIQAAAIPVLLEGRD------ALGKAQTGTGKTAAFSLPLLNKLNLSQHKPQAIVMA 101

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN   + V  I G      + +AL+      AHI++GT    +
Sbjct: 102 PTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS----GAHIVVGTPGRVK 157

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M   P   + ++ ++     +
Sbjct: 158 DLITRDRL---HLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMV 214

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            +I E+   R P    +   N+    +E+   V+   +K   +   +E ++         
Sbjct: 215 KEIVERFL-RNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 273

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 274 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 333

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V +++ +   
Sbjct: 334 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQ 392

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +   D  +  E  +  + Q        +  E    L+E
Sbjct: 393 LPHRD--KVAESRLTKLGQELAADKEFSSLERFAELVE 428


>gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 514

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 131/346 (37%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
           +P+  Q  AI  +LQ          +     G+GKT    + M   +  G        +A
Sbjct: 23  TPSPIQAQAIPAVLQGKDV------MAAAQTGTGKTAGFTLPMLELLSKGNRAQAGQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +N  +   +I G +P   +   L         +++ T  
Sbjct: 77  LVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRH----GVDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 133 RLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRK-------ILAILPKQRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +++    + + +K+  +   I++     
Sbjct: 186 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   +  FKNG  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+     ++  +  +     +H++ GR GR       + L    
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGQAVSLVSNE 350


>gi|195492387|ref|XP_002093968.1| GE20460 [Drosophila yakuba]
 gi|194180069|gb|EDW93680.1| GE20460 [Drosophila yakuba]
          Length = 818

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/364 (20%), Positives = 129/364 (35%), Gaps = 35/364 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           +     GSGKTL  ++     +          G  
Sbjct: 178 KPTAIQAQGWPIALSGRD------LVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPI 231

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  NT +    I G  P+  + + LER       I+I T 
Sbjct: 232 ALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLER----GVEIVIATP 287

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 288 GRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKE 347

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L    L +     I             I+ +   +E + +L  +L++         +
Sbjct: 348 VRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTDISAE----NE 403

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +       +  V+               IHG  S  +++ V+ SF+NG   +L+AT V 
Sbjct: 404 TKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVA 463

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D   +I  +        +H++ GR GR     +   L+    +  +   + VL
Sbjct: 464 ARGLDVDDVKFVINYDYPSNSEDYVHRI-GRTGRSNNTGTAYTLFTHSNANKANDLIQVL 522

Query: 612 KNTE 615
           +   
Sbjct: 523 REAN 526


>gi|194865632|ref|XP_001971526.1| GG15018 [Drosophila erecta]
 gi|190653309|gb|EDV50552.1| GG15018 [Drosophila erecta]
          Length = 824

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/364 (20%), Positives = 129/364 (35%), Gaps = 35/364 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           +     GSGKTL  ++     +          G  
Sbjct: 179 KPTAIQAQGWPIALSGRD------LVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPI 232

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  NT +    I G  P+  + + LER       I+I T 
Sbjct: 233 ALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLER----GVEIVIATP 288

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 289 GRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKE 348

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L    L +     I             I+ +   +E + +L  +L++         +
Sbjct: 349 VRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTDISAE----NE 404

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +       +  V+               IHG  S  +++ V+ SF+NG   +L+AT V 
Sbjct: 405 TKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVA 464

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D   +I  +        +H++ GR GR     +   L+    +  +   + VL
Sbjct: 465 ARGLDVDDVKFVINYDYPSNSEDYVHRI-GRTGRSNNTGTAYTLFTHSNANKANDLIQVL 523

Query: 612 KNTE 615
           +   
Sbjct: 524 REAN 527


>gi|269963221|ref|ZP_06177555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio harveyi
           1DA3]
 gi|269832026|gb|EEZ86151.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio harveyi
           1DA3]
          Length = 421

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 148/372 (39%), Gaps = 41/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-----QAVI 326
           +PT  QE +I  +L+          +     G+GKT    + +   V+        QA+I
Sbjct: 29  TPTPVQEKSIPHVLEGKD------LLAAAQTGTGKTAAFGLPIIQTVQQKKRNGTPQALI 82

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + + +Y+ NT + +  + G      +++ LE      A I+I T    
Sbjct: 83  LVPTRELAQQVMDNLTQYSANTDLKIVCVYGGTSIGVQKRKLEE----GADILIATPGRL 138

Query: 387 QDSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLV 436
            D +        +   L+L   D     G    L+  L +      ++L +AT   R   
Sbjct: 139 LDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPQDKQIMLFSATFEKRIKT 198

Query: 437 LTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +         ++   PA      +K ++ P+++  +      ++ S   +   +  + ++
Sbjct: 199 IAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQVLVFTKTKQ 258

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             +       E    L      +++I +G  S   ++  +D FK G  + LIAT V   G
Sbjct: 259 GSD-------ELAKELKLDGIKAVSI-NGDKSQGARQRALDEFKEGKVRALIATDVAARG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+ +   ++  +        +H++ GR GR  +    + L    +S++    L  ++N 
Sbjct: 311 LDIQELEQVVNFDMPFKAEDYVHRI-GRTGRAGKSGLAVSL----MSRDEEYLLHAIENL 365

Query: 615 EDGFLIAEEDLK 626
            D   + +E L+
Sbjct: 366 LDQ-RLPQEWLE 376


>gi|206725493|ref|NP_001126368.1| ATP-dependent RNA helicase DDX42 [Pongo abelii]
          Length = 942

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 200 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 252

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 306

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSM 366

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 367 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 423 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 472

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 473 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 532

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 533 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 591

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 636


>gi|75061727|sp|Q5R7D1|DDX42_PONAB RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|55731230|emb|CAH92329.1| hypothetical protein [Pongo abelii]
          Length = 942

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 200 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 252

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 306

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSM 366

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 367 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 423 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 472

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 473 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 532

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 533 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 591

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 636


>gi|121602645|ref|YP_988916.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120614822|gb|ABM45423.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain
           protein [Bartonella bacilliformis KC583]
          Length = 462

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 81/367 (22%), Positives = 147/367 (40%), Gaps = 51/367 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q   I  +LQ          +     G+GKT   ++ M   +E G       + +
Sbjct: 28  APTPIQSETIPHVLQHKDV------LGIAQTGTGKTASFVLPMLTLLEKGRAKARMPRTL 81

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +   H+ + LER     A ++I T   
Sbjct: 82  ILEPTRELAAQVKENFDKYGINHRLNVALLIGGVSFDHQDRKLER----GADVLIATPGR 137

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +   L+L+ V     DE  R      +   ++       +   TP   +TL  ++
Sbjct: 138 LLDHFERGTLLLMGVEILVIDEADRMLDMGFIPDIER-------ICKLTPFTRQTLFFSA 190

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW--------ICPQ 491
               +I K+TE+     P+   I   +     I   + ++  G KA+         I  +
Sbjct: 191 TMAPEIIKLTEQFL-HSPVCVEITKESSTARTI--TQRLVKSGSKAWHKRAVLRKLIHDE 247

Query: 492 IEEKK-----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +E K      +  + + E F SL ++   S+ ++HG M    + + +  FK     LL+
Sbjct: 248 NKELKNAIVFCNRKKDISELFRSLVKY-NFSVGVLHGDMDQHSRMNTLADFKENKLTLLV 306

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           A+ V   G+D+ D S +   +        +H++ GR GR +       +     +KN   
Sbjct: 307 ASDVAARGLDIPDVSHVFNYDVPTHAEDYIHRI-GRTGRAKRSGKAFTIV----TKNDQK 361

Query: 607 RLSVLKN 613
            +S ++ 
Sbjct: 362 YISAIEK 368


>gi|315122206|ref|YP_004062695.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495608|gb|ADR52207.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 459

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 141/362 (38%), Gaps = 38/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q   I  +LQ    ++ +  I Q   G+GKT   ++ M   +E G       + +
Sbjct: 23  DPTPIQVKTIPLVLQ----RHDVCGIAQ--TGTGKTASFVLPMLTILEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  +  +KY +N  + + ++ G +P   + K LER     A ++I T   
Sbjct: 77  ILEPTRELASQVADNFQKYGKNYNLNIALLIGGIPFETQNKKLER----GADVLICTPGR 132

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D     KL++  +     DE  R      +   Q  T       +  P   +TL+ ++
Sbjct: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPDIQSIT-------SLIPFTRQTLLFSA 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY-WICPQIEEKKES 498
               ++ K++EK         V  P +  + +         +  K +  +   I E+   
Sbjct: 186 TMTEELQKVSEKFLQNPKRIEVNTPYSTAETIEHCFVATYPQYSKKFGLVQKLIREQDAI 245

Query: 499 N----FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F +  +   SL         S+  IHG M    +  ++DSFK GT +L++A+ + 
Sbjct: 246 KNAIIFCNQKKDVASLCCALEKQGFSVCAIHGNMDQRSRIKILDSFKEGTIQLMVASDLA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D   +   +  +     +H++ GR GR         L      K       ++
Sbjct: 306 ARGLDIPDVGHVFNFDVPNRPENYIHRI-GRTGRAGRSGKAFTLVTSEDVKYIDAIEKLI 364

Query: 612 KN 613
           + 
Sbjct: 365 EK 366


>gi|284047862|ref|YP_003398201.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952083|gb|ADB46886.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 417

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 154/386 (39%), Gaps = 38/386 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + V+  + +K+ R     PT  QE AI  +L           I +   G GKTL  +I +
Sbjct: 8   LKVDETMVEKLHRTGKDIPTPVQERAIPALLNGRDV------IARAQTGVGKTLSFVIPL 61

Query: 315 AAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
              V+      QA+I++P   LAQQ    I+K   +T I    ++G       ++ +   
Sbjct: 62  FDKVDPQKEFVQALILSPTRELAQQTAGEIRKLEGDTGIRTLTVSGGRDFEEEKRKIGH- 120

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHV 423
              +A +++GT     D ++           L+L  VDE  R G  + +           
Sbjct: 121 ---RAQVLVGTPGRLLDHLRKGNTSLGGVKYLVLDEVDEMLRQGFGEDI---------ET 168

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           LL       +T++ ++  D ++ K+  +     P+   I P       I ++ + +SE  
Sbjct: 169 LLSLMPQPHQTMMCSATLDEEVRKLG-RQLTTNPLVIDIAPKESTASTIHQICIKVSEDH 227

Query: 484 KAYWICPQIEEKKESNF---RSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSF 537
           KA  +   I               ER   L +       ++ ++HG MS   +  VM++F
Sbjct: 228 KADALASLIRRYNPFLMLVFCCSKERAIELSDWLYGEGFNVDVLHGDMSQTKRRQVMENF 287

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +    ++L+A+ +   G+DV   + ++  +  H     +H++ GR GR     + I  Y 
Sbjct: 288 RKAKLQILVASDIAARGLDVEGITQVVNYDIPHDPDWYVHRI-GRTGRAGSEGTAITFYT 346

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEE 623
              ++        L  T +   +A E
Sbjct: 347 ADETRWLQNLEKKLDITLERQNLAGE 372


>gi|60501849|gb|AAX22124.1| DEAD-box RNA-dependent helicase p68 [Carassius auratus]
          Length = 611

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 83/368 (22%), Positives = 143/368 (38%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L        M+ I Q   GSGKTL  L+     +          G  
Sbjct: 118 DPTPIQAQGWPVAL----SGKDMVGIAQ--TGSGKTLSYLLPAIVHINHQPFLERGEGPI 171

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +   +Y + +++    I G  P+  + + LER       I I T 
Sbjct: 172 CLVLAPTRELAQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 227

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D ++  K        L+L   D     G   Q R  L Q       L+ +AT    
Sbjct: 228 GRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKILDQIRPDRQTLMWSATWPKE 287

Query: 434 TLVLTSLGDIDISKIT----EKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYW 487
              L      D  +I     +  A    ++ V +     + D+++  L+ ++SE +    
Sbjct: 288 VRQLAEDFLKDYVQINVGALQLSANHNILQIVDVCNDGEKEDKLMRLLEEIMSEKENKTI 347

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I  + +       R   +   S+      ++ I HG  S  +++ V++ FK G   +LIA
Sbjct: 348 IFVETK-------RRCDDLTRSMRRDGWPAMGI-HGDKSQQERDWVLNEFKYGKAPILIA 399

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +  +     +H++ GR  R ++  +    + P   K ++  
Sbjct: 400 TDVASRGLDVEDIKFVINYDYPNNSEDYIHRI-GRTARSQKTGTAYTFFTPNNMKQAHDL 458

Query: 608 LSVLKNTE 615
           +SVL+   
Sbjct: 459 VSVLREAN 466


>gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 526

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 131/346 (37%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
           +P+  Q  AI  +LQ          +     G+GKT    + M   +  G        +A
Sbjct: 34  TPSPIQAQAIPAVLQGKDV------MAAAQTGTGKTAGFTLPMLELLSKGNRAQAGQVRA 87

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +N  +   +I G +P   +   L         +++ T  
Sbjct: 88  LVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRH----GVDVLVATPG 143

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 144 RLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRK-------ILAILPKQRQNLMFS 196

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +++    + + +K+  +   I++     
Sbjct: 197 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQ 256

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   +  FKNG  ++L+AT +   
Sbjct: 257 VLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAAR 316

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+     ++  +  +     +H++ GR GR       + L    
Sbjct: 317 GLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGQAVSLVSNE 361


>gi|163759551|ref|ZP_02166636.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
 gi|162283148|gb|EDQ33434.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
          Length = 509

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/362 (20%), Positives = 143/362 (39%), Gaps = 42/362 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 24  TPTPIQAGAIPPALE------RRDILGIAQTGTGKTASFVLPMLTMLERGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q +E  +KY +N ++ + ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVHENFEKYGKNHRLNIVLLIGGVSFEEQYRKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKL-----ILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIPR 433
             D  +  KL      L+++DE  R      +   ++           L  +AT  P  +
Sbjct: 134 LLDHTERGKLLMTGVELLVIDEADRMLDMGFIPDIERIVKLIPFTRQTLFFSATMPPEIQ 193

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKVVLSEGK---KAYWIC 489
            L    L +    ++    +    +   ++  +  D E  ERL+ ++        A   C
Sbjct: 194 KLADKFLQNPARIEVAPPSSTAATVTQKLVACSGKDFEKRERLRDLIRSQTDLTNAIIFC 253

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         + V + + SL +H   S+  +HG M    + +++  FK+    LL+A+ 
Sbjct: 254 NR--------KKDVADLYKSLEKHG-FSVGALHGDMDQRSRTNMLQGFKDNEITLLVASD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+   S +   +        +H++ GR GR     +   L +   +K       
Sbjct: 305 VAARGLDIPAVSHVFNFDVPIHAEDYVHRI-GRTGRAGREGAAFTLVNRRDTKYVDAITK 363

Query: 610 VL 611
           ++
Sbjct: 364 LI 365


>gi|218290125|ref|ZP_03494287.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239834|gb|EED07023.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 465

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 140/384 (36%), Gaps = 33/384 (8%)

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           RK           +  ++ Q I       P+  Q + I  +L+          I Q   G
Sbjct: 12  RKVESMSSFESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDV------IGQAQTG 65

Query: 304 SGKTLVALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           +GKT    I +   V      QA+++ P   LA Q    I+K  +  ++    I G    
Sbjct: 66  TGKTAAFGIPLVERVSTEPRVQAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSI 125

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL- 412
            H+ +AL++       I+IGT     D I    L L  V        DE    G    + 
Sbjct: 126 VHQIRALKQ----GVQIVIGTPGRVLDHIHRGTLSLGDVRMVVLDEADEMLDMGFIDDIE 181

Query: 413 -KLTQKATAPHVLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             L +  +    +L +AT       L L  + D     +         I  V   +   +
Sbjct: 182 AILRETPSDRQTMLFSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLERN 241

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           ++    ++V SE  +   I  + +       R V +   +L      +  + HG +S   
Sbjct: 242 KLDSLCRIVDSEDIQLGIIFCRTK-------RGVDDLVEALLARGYLADGL-HGDLSQAQ 293

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           ++ VM  F+    +LL+AT V   G+DV D + +I  +      + +H++ GR GR  + 
Sbjct: 294 RDRVMRKFRKNEIELLVATDVAARGLDVDDVTHVINYDVPQDPESYVHRI-GRTGRAGKR 352

Query: 590 SSCILLYHPPLSKNSYTRLSVLKN 613
              I L  P   K        +K 
Sbjct: 353 GLAITLVTPREYKLLKQIEREIKQ 376


>gi|148380762|ref|YP_001255303.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153932415|ref|YP_001385046.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936759|ref|YP_001388516.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           Hall]
 gi|148290246|emb|CAL84365.1| ATP-dependent RNA helicase (cold-shock dead-box protein)
           [Clostridium botulinum A str. ATCC 3502]
 gi|152928459|gb|ABS33959.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932673|gb|ABS38172.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. Hall]
          Length = 524

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/367 (20%), Positives = 149/367 (40%), Gaps = 38/367 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----E 319
           ++ + F  P+  QE +I  +L+          I Q   G+GKTL     + +A+     +
Sbjct: 19  IQYMGFETPSAIQEKSIPVVLEG------ADVIAQAQTGTGKTLAFGAPVISALCDKEKK 72

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G +A+++ P   LA Q  + +K+ ++ ++  V  + G      + K ++        I+
Sbjct: 73  KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS----GVDIV 128

Query: 380 IGTHALFQDSIQYYKLILVIVD--------EQHRFGVQQRLKLTQKAT--APHVLLMTAT 429
           +GT     D I    L L  +D        E    G  + ++   ++T      +L +AT
Sbjct: 129 VGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTMLFSAT 188

Query: 430 ---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
              PI +  +     D++   I +K      I      +   D++    +++ SE  ++ 
Sbjct: 189 MPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRIIDSEEPESA 248

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            I  +         +  V+      +    ++  +HG MS   + + +  FK  T   L+
Sbjct: 249 IIFCRT--------KRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   GIDV + S +I  +      + +H++ GR GR ++  +   L  P    +   
Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRI-GRTGRADKEGTAYSLVTPREVSSIRQ 359

Query: 607 RLSVLKN 613
              ++K+
Sbjct: 360 IERIIKS 366


>gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
          Length = 525

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 131/346 (37%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
           +P+  Q  AI  +LQ          +     G+GKT    + M   +  G        +A
Sbjct: 34  TPSPIQAQAIPAVLQGKDV------MAAAQTGTGKTAGFTLPMLELLSKGNRAQAGQVRA 87

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +N  +   +I G +P   +   L         +++ T  
Sbjct: 88  LVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRH----GVDVLVATPG 143

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 144 RLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRK-------ILAILPKQRQNLMFS 196

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +++    + + +K+  +   I++     
Sbjct: 197 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQ 256

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   +  FKNG  ++L+AT +   
Sbjct: 257 VLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAAR 316

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+     ++  +  +     +H++ GR GR       + L    
Sbjct: 317 GLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGQAVSLVSNE 361


>gi|295104399|emb|CBL01943.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           SL3/3]
          Length = 395

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 144/374 (38%), Gaps = 36/374 (9%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   K +  + F+  T+ QE  I  +L           I +   G+GKT    I +   
Sbjct: 9   SEAIHKAVERMGFAEMTEIQEKTIPLMLAGHDV------IAKAPTGTGKTCAFGIPVVEH 62

Query: 318 VEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAH 373
           ++      QAVIMAP   LAQQ  E +   T     + V  + G      + K L     
Sbjct: 63  IQPENKYPQAVIMAPTRELAQQIAEELTNLTYFMPEVQVACVYGGANMEKQAKRLAE--- 119

Query: 374 GQAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFG-VQQRLKLTQKATAPHVL 424
               I++ T     D  +++        +++L   DE    G  +    + +   A   L
Sbjct: 120 -GCQIVVATPGRLMDHYKHHSIDISHVTQIVLDEADEMLNMGFYKDVRHIIEMMKARKAL 178

Query: 425 LMTATPIPRTLV---LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            M +  I R ++        + +   +  +   +  I   ++  +  +++ +  ++++ E
Sbjct: 179 SMFSATISREVMDIGWLYQHNAEEITVQPREESQPKITQYMLETSGRNKLSDLAQIIIGE 238

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           G K   +          + +       +       S+  +HG +S  ++  +M +F++G 
Sbjct: 239 GYKRVMVF--------CDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQAFRDGK 290

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   GIDV D   +I  +         H++ GR GR ++     L Y P   
Sbjct: 291 LAILVATDVAARGIDVSDVDAVINYDVPSENEHYTHRI-GRTGRAKKEGVSYLFYVPEEK 349

Query: 602 KNSYTRLSVLKNTE 615
           K     L + +NT+
Sbjct: 350 KRVQELLRLTRNTD 363


>gi|258617566|gb|ACV83780.1| DEAD box ATP-dependent RNA helicase-like protein [Heliconius
           melpomene]
          Length = 646

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 84/381 (22%), Positives = 145/381 (38%), Gaps = 39/381 (10%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           N    I   I       PT  Q       L        M+ I     GSGKTL  ++  A
Sbjct: 241 NFPDHIMNTIKEQGWEEPTGIQAQGWPIAL----SGRDMVGI--ASTGSGKTLAYMLPAA 294

Query: 316 AAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             +          G  A+I+AP   LAQQ     + Y+ +  I    + G  P+  + + 
Sbjct: 295 VHIVHQQRIQRGDGPIALILAPTRELAQQIQSVAQAYSAHGCIRNTCLFGGSPKGPQARD 354

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQK 417
           LER       I+I T     D ++           L+L   D     G   Q R  + Q 
Sbjct: 355 LER----GVEIVIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI 410

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRKPIKTVIIPINRIDEVIE 473
                VL+ +AT       L      D  K+        A     + + +      EV  
Sbjct: 411 RPDRQVLMWSATWPKEIQALAEDFLTDYVKVNIGSLNLSANNNIKQIIEVCEEHEKEVKL 470

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
              +     +K   +   +E KK+ +     +   ++  +   ++AI HG  S  ++++V
Sbjct: 471 TNLLKEIASEKDNKVIVFVETKKKVD-----DIARAVRRNGHKALAI-HGDKSQQERDAV 524

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F+NG   +LIAT V   G+DV D   ++  +  +     +H++ GR GR ++  +  
Sbjct: 525 LTEFRNGATTILIATDVAARGLDVEDVKFVVNFDYPNTSEDYIHRI-GRTGRCQQSGTAY 583

Query: 594 LLYHPPLSKNSYTRLSVLKNT 614
             +    ++ + + L+VL+ T
Sbjct: 584 TYFTSGDARQARSLLAVLRET 604


>gi|239831816|ref|ZP_04680145.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
 gi|239824083|gb|EEQ95651.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
          Length = 484

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 138/365 (37%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE------RKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFAKYGINQRLNVALLIGGVSFDDQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRT- 434
             D  +  KL+L  V     DE  R      +   ++           L  +AT  P   
Sbjct: 134 LLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEIT 193

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVII-----PINRIDEVIERLKVVLSEGKKAYWI 488
            L    L      ++ +  +  K +   ++       ++   + + ++      K A   
Sbjct: 194 KLTEQFLHSPTRVEVAKASSTAKTVTQRLVKSTKKDWDKRAVLRDLIRAEGDTLKNAIIF 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         + V E F SL  H   +   +HG M    + +++ +FK+G  +LL+A+
Sbjct: 254 CNR--------KKDVSELFRSLTRH-EFNAGALHGDMDQRARMTMLSNFKDGKLQLLVAS 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S +   +        +H++ GR GR         +  P  +K      
Sbjct: 305 DVAARGLDIPDVSHVFNFDIPIHSEDYVHRI-GRTGRAGRSGKAFTIVTPSDTKYLAAIE 363

Query: 609 SVLKN 613
            ++  
Sbjct: 364 DMIGE 368


>gi|242019547|ref|XP_002430222.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212515318|gb|EEB17484.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 763

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 142/397 (35%), Gaps = 45/397 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              +  + + I ++   +PT  Q  A+   L           I     GSGKT   +  M
Sbjct: 274 FGFDEALMKVIRKSEYTTPTPIQAQAVPAALSGRD------IIGIAKTGSGKTAAFVWPM 327

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   +I+AP   L+QQ Y   KK+ +   I V    G   +  + K
Sbjct: 328 LIHIMDQKELKPGDGPIGLILAPTRELSQQIYSEAKKFGKVYNIQVICCYGGGSKWEQSK 387

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKA 418
           ALE      A I++ T     D I+           L+L   D     G + +++     
Sbjct: 388 ALEN----GAEIVVATPGRMIDLIKMKATNLKRVTFLVLDEADRMFDMGFEPQVRSICNH 443

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE-VIERLKV 477
                      P  +TL+ ++     + ++  +     PI+ V   +   +E VI+ + +
Sbjct: 444 VR---------PDRQTLLFSATFKKKVERLA-RVVLTDPIRIVQGDVGEANEDVIQNVLI 493

Query: 478 VLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           + ++  K  W+   I E   +         +   E   +  +     + ++HG M  I++
Sbjct: 494 LPNQAAKFMWLTSHIVEFLSNGSLLIFVTKKVNAEEVANNLKLKEFDVLLLHGDMDQIER 553

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             V+  FK     +L+AT V   G+D+     ++  +         H++ GR GR  E  
Sbjct: 554 NKVITQFKKKEVSILVATDVAARGLDIPHIKTVVNYDIARDIDTHTHRI-GRTGRAGERG 612

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
               L      + +   +  L+        +  DL  
Sbjct: 613 YAYTLVLNQDKEFAGHLVRNLEGANQEVPKSLMDLAL 649


>gi|33240544|ref|NP_875486.1| superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238072|gb|AAQ00139.1| Superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 603

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 137/369 (37%), Gaps = 43/369 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT  Q+++I +++           + Q   G+GKT    + +   +   E   Q +++ 
Sbjct: 73  EPTPIQKASIPELMLGRD------LLGQAQTGTGKTAAFALPLLERINSKERNPQVLVLT 126

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  K Y++ +  I +  + G      +  +L+R       II+GT     
Sbjct: 127 PTRELAMQVAESFKAYSEGHANINILAVYGGSDFRSQIYSLKR----GVEIIVGTPGRVM 182

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVL 437
           D I+           L+L   DE  R G    ++    Q      ++L +AT  P    L
Sbjct: 183 DHIRQGTLNQDSLQCLVLDEADEMLRMGFIDDIEWILEQLPNERQMVLFSATMPPEIRKL 242

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +     D ++IT            I    +  ++I +  + +    K   +   +E    
Sbjct: 243 SKRYLRDPAEIT------------IKAKKKEAQLIRQHYITVQNSYKLEVLRRVLELNYG 290

Query: 498 S------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++  +     E    ++A+++G +    +E  ++  + G   +L+AT V 
Sbjct: 291 EGVIIFARTKAITLKLAESLEASNHNVAVLNGDVPQNLRERTVERLRQGGINILVATDVA 350

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV    ++I  +      A +H++ GR GR       IL   P            +
Sbjct: 351 ARGLDVERIGLVINYDMPFDSEAYVHRI-GRTGRAGRSGEAILFISPRERSYLNNLERAV 409

Query: 612 KNTEDGFLI 620
             + +   I
Sbjct: 410 GQSIERMEI 418


>gi|153839935|ref|ZP_01992602.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260901625|ref|ZP_05910020.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|149746542|gb|EDM57530.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308108886|gb|EFO46426.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|328470634|gb|EGF41545.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
          Length = 417

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 148/372 (39%), Gaps = 41/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-----AVI 326
           +PT  QE +I  +L+          +     G+GKT    + +  AV+   +     A+I
Sbjct: 25  TPTPVQEKSIPHVLEGKD------LLAAAQTGTGKTAAFGLPIIQAVQQKKRNGTPHALI 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ ++ + +Y ++T + +  + G      ++  LE      A I+I T    
Sbjct: 79  LVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLEE----GADILIATPGRL 134

Query: 387 QDSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLV 436
            D +        +   L+L   D     G    L+  L +      ++L +AT   R   
Sbjct: 135 LDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQIMLFSATFEKRIKT 194

Query: 437 LTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +         ++   PA      +K ++ P+++  +      ++ S   +   +  + ++
Sbjct: 195 IAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQVLVFTKTKQ 254

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             +       E    L      +++I +G  S   ++  +D FK G  + LIAT V   G
Sbjct: 255 GSD-------ELAKELKLDGIKAVSI-NGDKSQGARQRALDEFKQGKVRALIATDVAARG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+ +   ++  +        +H++ GR GR  +    + L    +S++    L  ++  
Sbjct: 307 LDIQELEQVVNFDMPFKAEDYVHRI-GRTGRAGKSGLAVSL----MSQDEEYLLRAIETL 361

Query: 615 EDGFLIAEEDLK 626
            D   + +E L+
Sbjct: 362 LDQ-RLPQEWLE 372


>gi|163848628|ref|YP_001636672.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526563|ref|YP_002571034.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163669917|gb|ABY36283.1| DEAD/DEAH box helicase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450442|gb|ACM54708.1| DEAD/DEAH box helicase domain protein [Chloroflexus sp. Y-400-fl]
          Length = 552

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 129/348 (37%), Gaps = 34/348 (9%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--G 322
           L  + +  PT  Q  AI  +L           I Q   G+GKT    + M   V      
Sbjct: 17  LSGLGYDEPTPIQAQAIPLLLAGRDV------IAQAQTGTGKTAAFALPMIERVTDALVV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+++AP   LA Q  E I +Y ++  + V  I G  P   + + L +       +++GT
Sbjct: 71  QALVLAPTRELAVQVAEAIHRYGRHRSLRVLPIYGGQPIERQLRGLAQ----GTQVVVGT 126

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT--P 430
                D ++   L        +L   DE    G  + L   L    T     L +AT  P
Sbjct: 127 PGRVLDHLKRGSLRFDHLRMVVLDEADEMLDMGFAEELEAILQLTPTERQTALFSATLPP 186

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + L L          I  +      I+     +   D++    +V+ +E  +   +  
Sbjct: 187 AVQNLTLRYTRQPVRVSIAAEQLTTPRIRQTYYEVLARDKLDALCRVLDAEMPQLAIVFC 246

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         R   +      +    +   +HG +S   ++ VM  F+ G   +L+AT V
Sbjct: 247 RT--------RQEADDIGERLQGRGYAAESLHGDLSQAARDRVMRRFREGQLDVLVATDV 298

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+ + S +I  +      + +H++ GR GR       I    P
Sbjct: 299 AARGLDIAEVSHVINYDVPTDPESYVHRI-GRTGRAGREGVAITFITP 345


>gi|269469155|gb|EEZ80700.1| ATP-dependent RNA helicase RhlE [uncultured SUP05 cluster
           bacterium]
          Length = 434

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 138/363 (38%), Gaps = 36/363 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
            P+  QE +I  +L           +     G+GKT    + +   +  G        + 
Sbjct: 23  KPSPIQEKSIPIVLDGKD------LMAAAQTGTGKTAGFTLPILQLLSKGKPTNSNQVRT 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + K L     G   I++ T  
Sbjct: 77  LILTPTRELAAQVQDSVATYGKHLPLKSTVVFGGVKINPQMKKLR----GGVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L +++ DE  R      +   +       +L    P  +TL+ ++
Sbjct: 133 RLLDLYSQNAVKFDQLEIIVFDEADRMLDMGFIHDIK------RILKVLPPKRQTLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I K+  K     P++    P N   + +++    + + KK   +   I++     
Sbjct: 187 TFSDEIRKLA-KSLVHNPVEVSTTPRNTTVKSVKQWIHPVDKSKKQALLTKLIKDHSWYQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK+G   +L+AT +   
Sbjct: 246 VLVFSRTKHGANRIATQLGKRGITAAAIHGNKSQGARTRALADFKDGKVNVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+++   ++  +  H     +H++ GR GR       I L      K  +    +++N
Sbjct: 306 GIDIIELPHVVNFDLPHVPEDYVHRI-GRTGRAGSKGEAISLVSADEVKQLFDIERLIQN 364

Query: 614 TED 616
             D
Sbjct: 365 KLD 367


>gi|254819463|ref|ZP_05224464.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium intracellulare ATCC 13950]
          Length = 567

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 77/359 (21%), Positives = 137/359 (38%), Gaps = 35/359 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q + I  ++           +     G+GKT    I + + ++      QA+++A
Sbjct: 35  SPTGIQAATIPALMAG------SDVVGLAQTGTGKTAAFAIPILSKIDVTSTATQALVLA 88

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y  +   I V  I G    + +   L R     AH+++GT     
Sbjct: 89  PTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYSVQLAGLRR----GAHVVVGTPGRVI 144

Query: 388 DSIQYYKLILVIVD--------EQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVL 437
           D ++   L L  VD        E    G  + +   L++      V L +AT  P    L
Sbjct: 145 DHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFSATMPPAIRKL 204

Query: 438 TSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           T+    D  +++ K   A  + I    I +    ++    +V+  E  +A  +  +    
Sbjct: 205 TTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKMDALTRVLEVEPFEAMIVFVRT--- 261

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E           S A I+G +    +E  + + K+G+  +L+AT V   G+
Sbjct: 262 -----KQATEEVAEKLRARGFSAAAINGDIPQGQRERTVAALKDGSIDILVATDVAARGL 316

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           DV   S ++  +  H   + +H++ GR GR     + +L   P             + T
Sbjct: 317 DVERISHVLNYDIPHDTESYVHRI-GRTGRAGRSGTALLFVSPRERHLLKAIEKATRQT 374


>gi|116252340|ref|YP_768178.1| cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256988|emb|CAK08082.1| putative cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 521

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 77/363 (21%), Positives = 139/363 (38%), Gaps = 42/363 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI   L+      R         G+GKT   ++ M + +E G       + +I
Sbjct: 31  PTPIQAGAIPFALE------RRDICGIAQTGTGKTASFVLPMLSLLEKGRARARMPRTLI 84

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  +KY +N ++ V ++ G +    + + LER     A ++I T    
Sbjct: 85  LEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLER----GADVLICTPGRL 140

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPI--PRT 434
            D  +  KL++  V     DE  R      +   ++           L  +AT     + 
Sbjct: 141 LDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLFFSATMPSEIQK 200

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSEGKKAYWICP 490
           L    L + +  ++ +  +    +    +  +  D     V+  L    +E K A   C 
Sbjct: 201 LADRFLQNPERIEVAKPASAAATVTQRFVASHGKDYEKRAVLRELVRAQTELKNAIIFCN 260

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         + V + F SL  H   S+  +HG M    +   + SF++G  +LL+A+ V
Sbjct: 261 R--------KKDVADLFRSLERHG-FSVGALHGDMDQRSRTMTLQSFRDGNLQLLVASDV 311

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D S +   +        +H++ GR GR     +   L     +K       +
Sbjct: 312 AARGLDIPDVSHVFNFDVPIHSEDYVHRI-GRTGRAGRSGAAFTLVTKRDTKFVDAIEKL 370

Query: 611 LKN 613
           +  
Sbjct: 371 IGQ 373


>gi|198463474|ref|XP_002135506.1| GA28589 [Drosophila pseudoobscura pseudoobscura]
 gi|198151271|gb|EDY74133.1| GA28589 [Drosophila pseudoobscura pseudoobscura]
          Length = 799

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/368 (22%), Positives = 139/368 (37%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           +     GSGKTL  ++     +          G  
Sbjct: 164 KPTAIQAQGWPIALSGRD------LVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPI 217

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  NT +    I G  P+  + + LER       I+I T 
Sbjct: 218 ALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLER----GVEIVIATP 273

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 274 GRLIDFLERGTTTLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKE 333

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYW 487
            R L    L +     I      A    ++ V +     ++ ++I+ L  + +E +    
Sbjct: 334 VRQLAEEFLTNYIQVNIGSLTLSANHNILQIVDVCDESEKLGKLIKLLSDISAENETKTI 393

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I   +E KK  +     E   ++      + AI HG  S  +++ V+ SF+NG   +L+A
Sbjct: 394 IF--VETKKRVD-----EITRNISRQGWRACAI-HGDKSQQERDFVLSSFRNGRHSILVA 445

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +        +H++ GR GR     +   L+    +  +   
Sbjct: 446 TDVAARGLDVDDVKFVINYDYPSNSEDYVHRI-GRTGRSNNTGTAYTLFTHSNANKANDL 504

Query: 608 LSVLKNTE 615
           + VL+   
Sbjct: 505 IQVLREAN 512


>gi|157963311|ref|YP_001503345.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157848311|gb|ABV88810.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 511

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/396 (17%), Positives = 149/396 (37%), Gaps = 45/396 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L+          +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQAQAIPAVLEGKDV------MAAAQTGTGKTAGFTLPLLELLSKGTKAPAKQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +N  +   ++ G +    +   L R       I++ T  
Sbjct: 77  LVLTPTRELAAQVGESVETYGKNLPLKSAVVFGGVGIGPQITKLNR----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++ + +L ++++DE  R      +   +K      +L       + L+ ++
Sbjct: 133 RLLDLYNQRALSFSQLEVLVLDEADRMLDMGFIHDIKK------ILAILPAKRQNLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               DI ++  K     P++  + P N     +++    + + +K   +   I++     
Sbjct: 187 TFSDDIRQLA-KGLVNNPVEISVTPRNATANTVQQWVCPVDQSQKTAVLVKLIKQNDWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E    + A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANRLAKNLEAKDITAAAIHGNKSQGARTKALADFKSGAVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++  +  +     +H++ GR GR       + L     +K       ++K 
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGHAVSLVSNEETKLLRDIELLIKQ 364

Query: 614 TE-----DGFL----IAEEDLKQRKEGEILGIKQSG 640
                  +G      + E DL  +  G+  G + SG
Sbjct: 365 NLERRVVEGLEPTHNLPETDLTGKSHGQNRGPRNSG 400


>gi|187736504|ref|YP_001878616.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426556|gb|ACD05835.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 400

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 135/367 (36%), Gaps = 40/367 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAPI 330
           PT  QE AI  IL+          I     G+GKT    + +   ++     Q +++ P 
Sbjct: 24  PTPIQEQAIPIILEGRD------LIGASQTGTGKTAAFALPLLTRIQPIGKPQILVLEPT 77

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E   +Y + T + V ++ G +    + + L++     A I++ T     D  
Sbjct: 78  RELADQVAESFAEYGEFTGLKVALLYGGVGYGKQTEDLKK----GADIVVATPGRLVDHF 133

Query: 391 QY--------YKLILVIVDEQHRFGV---QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
                       L+L  VD     G     +++           L  +AT  P       
Sbjct: 134 YRCTMRFGEVKALVLDEVDRMLDMGFLPIVRKIVNLCPWEGRQTLFFSATMPPVIAGFAK 193

Query: 440 LGDIDISKIT---EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
               D +++T    + A         + +++ DE++    + L +G     +      +K
Sbjct: 194 WCLTDPAEVTIARREVAATISHAFYPVALDQRDELL----LALLKGTDFRSVMIFTRTRK 249

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           E++    + +    H  +   +A++H  +   ++   +  FK+G   +L+AT V   GID
Sbjct: 250 EADAVCGMLK----HHGYRGEVAVMHSDIPQKERMEALKGFKSGKYDILVATDVAARGID 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL----- 611
           +   + +I           +H++ GR GR E       +        +    + +     
Sbjct: 306 ISGVTHVINYRVPENAEDYVHRI-GRTGRAEASGDAFTIMTADELDFAAAVENFIGKPIE 364

Query: 612 KNTEDGF 618
           +   DGF
Sbjct: 365 RKKLDGF 371


>gi|125526364|gb|EAY74478.1| hypothetical protein OsI_02369 [Oryza sativa Indica Group]
          Length = 792

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 136/367 (37%), Gaps = 44/367 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
           SPT  Q  +    LQ          +     GSGKTL  L+     ++       +G   
Sbjct: 172 SPTPIQAQSWPIALQCQDV------VAIAKTGSGKTLGYLLPGFMHIKRLQNNPRSGPTV 225

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  E   K+ ++++I    + G  P+  + + L+R       +++ T  
Sbjct: 226 LVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLDR----GVDVVVATPG 281

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT 434
              D ++  +        L+L   D     G   Q R  + +       L+ TAT     
Sbjct: 282 RLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTATWPKEV 341

Query: 435 L-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +L     + I  + E  A     + V +I  +     +E++      G K    
Sbjct: 342 RRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLEQILRSQDSGSKVLIF 401

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C           R   +   +L   F +S   IHG  S  ++E V+  F++G   +L+AT
Sbjct: 402 CTT--------KRMCDQLARTLTRQFGASA--IHGDKSQSEREKVLSHFRSGRSPILVAT 451

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D  ++I           +H++ GR GR          +    SK +   +
Sbjct: 452 DVAARGLDIKDIRVVINSPFPTGIEDYVHRI-GRTGRAGATGVAYTFFCDQDSKYAADLI 510

Query: 609 SVLKNTE 615
            +L+   
Sbjct: 511 KILEGAN 517


>gi|254461770|ref|ZP_05075186.1| ATP-dependent RNA helicase DeaD [Rhodobacterales bacterium
           HTCC2083]
 gi|206678359|gb|EDZ42846.1| ATP-dependent RNA helicase DeaD [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 450

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 125/362 (34%), Gaps = 41/362 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI + L           +     G+GKT    + +   +            +
Sbjct: 27  TPTPIQARAIPEALNGHDV------LGLAQTGTGKTAAFGLPLITLLSENPGRPSPKTVR 80

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  E +K YT+ T I V ++ G      + K LE+       I++ T 
Sbjct: 81  ALILAPTRELAGQIVENLKDYTKGTPIKVALVVGGQSINVQSKRLEK----GIDILVATP 136

Query: 384 ALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +    L        +L   D+    G    L+                   +T+
Sbjct: 137 GRLIDLMDRRALTLKESHFLVLDEADQMLDMGFIHALRQIAAVLPEQ---------RQTM 187

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     +++I            V  P    D+V + +  +    K++  I      K
Sbjct: 188 LFSATMPKLMNEIANTYLKSPKRIQVSPPGKAADKVTQVVHFIAKTEKQSLLIELLGAHK 247

Query: 496 KES-----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            E        +   E+          +   IHG  S   +E  + +FK G  K+L+AT V
Sbjct: 248 DERALVFGRTKHGCEKLMKQLVARGFAATSIHGNKSQGQRERALAAFKAGEMKVLVATDV 307

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D   +      +   A +H++ GR  R  +  + I    P            
Sbjct: 308 AARGLDIPDVRHVYNYELPNVPDAYVHRI-GRTARAGKDGAAIAFCAPDEMDLLKDIEKT 366

Query: 611 LK 612
           +K
Sbjct: 367 MK 368


>gi|227825056|ref|ZP_03989888.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
 gi|226905555|gb|EEH91473.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
          Length = 532

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 133/358 (37%), Gaps = 34/358 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N++ KI   +       P+  Q+ AI   L+          I Q   G+GKT    I +
Sbjct: 12  LNLDKKILSALKDMGFEEPSPIQKGAIPLALEG------DDIIGQAQTGTGKTAAFGIPI 65

Query: 315 AAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             +++      QA++M+P   L  Q  E I K  +  ++ V  + G  P   + ++L+  
Sbjct: 66  IQSIDEKNRHVQALVMSPTRELCIQVAEEISKIGRLKRVHVLPVYGGQPIERQIRSLKH- 124

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHV 423
                 ++IGT     D ++           L+L   DE    G  + +           
Sbjct: 125 ---GVQVVIGTPGRLLDHLRRGTISLDHIHFLVLDEADEMLDMGFIEDI---------ET 172

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           ++    P  +T++ ++     I  I++K      +  +   I     + +       +  
Sbjct: 173 IIKEVPPERQTMLFSATMPRPILSISKKYMRTPKVVAIHKEIVTAPTIDQYYYETRDKVD 232

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
               I    ++ K   F    +  + L     +       +HG +S   ++ VM  F+  
Sbjct: 233 GLCRILDTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQTQRDRVMKKFRQD 292

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              +L+AT V   GID+ + + ++  +      + +H++ GR GR       +    P
Sbjct: 293 QVDILVATDVAARGIDIDNITHVVNFDVPQDPESYVHRI-GRTGRAGNTGVALTFITP 349


>gi|242278297|ref|YP_002990426.1| DEAD/DEAH box helicase [Desulfovibrio salexigens DSM 2638]
 gi|242121191|gb|ACS78887.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 521

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 135/344 (39%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +PT  QE  I  +L           + Q   G+GKT    + +   V  G    QA+++ 
Sbjct: 24  APTPIQEKTIPMLLSGEK-----DIVGQAQTGTGKTAAFGLPIIENVREGAGHVQAIVLT 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I  +  + ++ V  + G  P   + KAL+R     A I++GT     D
Sbjct: 79  PTRELAMQVADEIISFRGSRKVFVATVYGGQPMLPQLKALKR----GADIVVGTPGRVLD 134

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L L  +        DE    G  + +    +               RTL+ ++ 
Sbjct: 135 HIRRKTLDLSQINNFVLDEADEMCNMGFLEEVSEIMENAGED---------RRTLLFSAT 185

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
              ++  I +K  G   + +V    +    + E +   ++E  +   +C  ++ + E   
Sbjct: 186 MPREVMNIAKKFMGDYDVVSVKREKDEAP-LTELIFHEVNERDRFEALCRVVDAQPEFYG 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R+  +R              IHG +S   +E ++  F+   CK+L+AT V   G
Sbjct: 245 LVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           IDV D S ++         + +H++ GR GR  +    + L  P
Sbjct: 305 IDVPDLSHVVNFALPQDPQSFVHRV-GRTGRAGKKGVAVTLITP 347


>gi|254468401|ref|ZP_05081807.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
 gi|207087211|gb|EDZ64494.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
          Length = 444

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 134/355 (37%), Gaps = 30/355 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  QE  I  +L           +     G+GKT    + +   VE   +        
Sbjct: 23  TPTPIQEQCIPVVLSGKDV------LASAQTGTGKTAAFCLPLLNLVEKKPKHKHKRNIS 76

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +I++P   LA Q  + +K+++      +  + G +    + K L+       + ++ 
Sbjct: 77  PDVLILSPTRELATQIEQELKRFSHFMDTNIVSVVGGVSYKLQNKLLKS----NVNFLVA 132

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D ++  K+ L  +D        + L +        +   T+    + L+ T+  
Sbjct: 133 TPGRLMDLVKQRKINLKHIDALVIDEADRMLDMGFIPDIKKIFESTS-QDQQVLMFTATL 191

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF- 500
           +  I KI ++   + P +  +   N+ ++ I+++   +++  +   +   +  + + N  
Sbjct: 192 NKQIEKIAQQFL-KDPQRIAVEQENKSNKNIQQIAYPVADYNQKKLVLVDVLNEADLNQA 250

Query: 501 ------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +   +R +            +HG MS  ++   ++ FKN   ++L+AT V   G
Sbjct: 251 IIFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFKNNEIQILVATDVAARG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           IDV D + +I  +        +H++ GR GR E     I L              
Sbjct: 311 IDVDDITHVINFDLPRQVEDYIHRI-GRTGRAERKGKAISLVIDKEKFMLQKIEK 364


>gi|164687595|ref|ZP_02211623.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
           16795]
 gi|164603369|gb|EDQ96834.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
           16795]
          Length = 541

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 80/360 (22%), Positives = 132/360 (36%), Gaps = 38/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q  +I  IL           I Q   G+GKT    I +   V+      QA+++ 
Sbjct: 26  EPSPIQAQSIPVILSGKDV------IGQAQTGTGKTAAFSIPILEKVDPNNKHLQAIVLC 79

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+K  +  + I    + G  P   + KAL+        ++IGT     
Sbjct: 80  PTRELAIQVSKEIRKLGKFKSGIKTLPVYGGQPIDRQIKALKS----GVQVVIGTPGRVI 135

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVL 437
           D I    L L  V        DE    G ++ ++L   Q          +AT     L L
Sbjct: 136 DHINRKTLKLDDVKMVVLDEADEMLDMGFREDIELILNQTPIERQTTFFSATMPKEILEL 195

Query: 438 T--SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           T     + +I K+  K      IK   I   R +++    +++     K   +       
Sbjct: 196 TKLYQHEPEIIKVVRKELTVPNIKQFYIETRRANKLEVLCRLIDVYNPKLSVVF------ 249

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  R   E  + L      +   +HG +    ++ VMD F+ GT  +L+AT V   GI
Sbjct: 250 -CNTKRGSDELVSELQARGYFA-DALHGDLKQTQRDIVMDKFRQGTIDILVATDVAARGI 307

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV D  ++   +        +H++ GR GR           +    K       + + T+
Sbjct: 308 DVDDVDMVFNYDLPQDEEYYVHRI-GRTGRAGREGVSFSFVY---GKEMRKMRDIERYTK 363


>gi|157736313|ref|YP_001488996.1| DEAD-box ATP dependent DNA helicase [Arcobacter butzleri RM4018]
 gi|157698167|gb|ABV66327.1| ATP-dependent RNA helicase, DEAD box family [Arcobacter butzleri
           RM4018]
          Length = 516

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/355 (20%), Positives = 135/355 (38%), Gaps = 37/355 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAP 329
            P+  QE AI  IL           + Q   G+GKT    + +   ++A  G +AV++ P
Sbjct: 23  EPSPIQEQAIPYILDGRD------IVGQAHTGTGKTAAFGLPILNKIKAKSGVEAVVIVP 76

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  + + ++ +   I    + G    A + K +E  +     +I+ T   F D 
Sbjct: 77  TRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIENSS-----VIVATPGRFLDL 131

Query: 389 ------SIQYYKLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
                 SI+   +IL   DE    G     +   T        LL +AT     + L  T
Sbjct: 132 LRGDKISIKPKFVILDEADEMLDMGFLDDIKEIFTFLPENRQTLLFSATMPTAIKNLAKT 191

Query: 439 SLGDIDISKITEKPAGRKPIKT--VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            L + +   +T+       I     ++     D+ +  +++   +  K   I  +     
Sbjct: 192 ILKEPEFVTLTKSDVTNSKITQTFYVVDEKERDDAL--IRLFDFKNPKKSIIFCRT---- 245

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+R ++           +HG M    +E  + +FK+   ++LIAT V   G+D
Sbjct: 246 ----KKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILIATDVAARGLD 301

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           V D + +   +      + +H++ GR GR  +    I +  P   +        +
Sbjct: 302 VNDVTHVFNYHLPFDSESYVHRI-GRTGRAGKEGMAISIVTPHEFRMLQKIEKSI 355


>gi|254226977|ref|ZP_04920540.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
 gi|125620490|gb|EAZ48861.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
          Length = 576

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 29/398 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +   +   QA++MA
Sbjct: 48  SPTPIQAAAIPVLLEGRD------ALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMA 101

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN   + V  I G      + +AL+      AHI++GT    +
Sbjct: 102 PTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS----GAHIVVGTPGRVK 157

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M   P   + ++ ++     +
Sbjct: 158 DLITRDRL---HLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMV 214

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            +I E+   R P    +   N+    +E+   V+   +K   +   +E ++         
Sbjct: 215 KEIVERFL-RDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 273

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 274 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 333

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V +++ +   
Sbjct: 334 ITHVYNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQ 392

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +   D  +  E  +  + Q        +  E    L+E
Sbjct: 393 LPHRD--KVAESRLTKLGQELAADKEFSSLERFADLVE 428


>gi|90022676|ref|YP_528503.1| ATP-dependent RNA helicase DeaD [Saccharophagus degradans 2-40]
 gi|89952276|gb|ABD82291.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 595

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 88/411 (21%), Positives = 160/411 (38%), Gaps = 42/411 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q  +I ++L           + Q   G+GKT    + +   ++      Q +++A
Sbjct: 28  TPSPIQAKSIPELLAGRD------ILGQAQTGTGKTAAFALPILNNLDLSQKAPQVLVLA 81

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  + Y  +     +  I G      + +AL+R      H+I+GT     
Sbjct: 82  PTRELAIQVAEAFQSYAHHLPGFHILPIYGGQGYDQQIRALKR----GVHVIVGTPGRVM 137

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRT--L 435
           D +        Q   L+L   DE  R G    ++  LTQ      + L +AT       +
Sbjct: 138 DHMRKGTLKLDQLKVLVLDEADEMLRMGFIDDVEWVLTQTPPTRQIALFSATMPKEIAKV 197

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D  + KI  K      I+     ++   ++    +++ +E   A  I  + +  
Sbjct: 198 ANKYLNDPALIKIEVKTQTADTIRQRYWGVSGHHKLDATTRILEAEEFDAMIIFVRTKT- 256

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                 + +E    L     SS A+ +G +S   +E  ++  K G   +L+AT V   G+
Sbjct: 257 ------TTIELAEKLAARGYSSAAL-NGDISQNLRERTVEKLKKGQIDILVATDVAARGL 309

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   A +H++ GR GR       IL   P   +   T     +   
Sbjct: 310 DVDRISHVLNYDIPYDSEAYVHRI-GRTGRAGRSGEAILFVAPREMRMLRTIEKATRKPI 368

Query: 616 DGFL-IAEEDLKQ----RKEGEILGIKQSGMPKF--LIAQPELHDSLLEIA 659
           +     + +D+ Q    R + +IL   +S   +F   +     HD+ L+ A
Sbjct: 369 ELMKMPSTDDINQIRVDRFKQKILDAAKSPGLEFFRKLVTEMQHDNELDTA 419


>gi|254293945|ref|YP_003059968.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
 gi|254042476|gb|ACT59271.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
          Length = 478

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 124/346 (35%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  I+Q                G+GKT   ++ M   +  G       + +
Sbjct: 23  EPTPIQAQAIPAIIQGRDVTGI------AQTGTGKTAAFVLPMIHKLGQGRAKARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  +  +KY  N ++ + ++ G +  A + K L         ++I T   
Sbjct: 77  ILEPTRELAAQVADNFEKYGVNHKLNMALLIGGVSFADQDKKLTA----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D  +  +L++  V     DE  R      +   +K      +     P  +TL+ ++ 
Sbjct: 133 LMDHFERGRLLMTGVQMLVIDEADRMLDMGFIPDIEK------ICKLLPPRRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIER------LKVVLSEGKKAYWI--CPQI 492
              +I+K+T++         V  P    + + +        K  +  G     I  C   
Sbjct: 187 MPPEIAKLTKQFQNDPKQIEVARPAQTAELITQHVTKSPSDKDEIKRGILRAIIASCEVK 246

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N +  V+             A IHG +S   +   ++ FKNG   LL+A+ V  
Sbjct: 247 NGIVFCNRKREVDIVAKSLNAHGFDAAPIHGDLSQSYRMETLEKFKNGDLTLLVASDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G+D+ D   +            +H++ GR GR         +  P
Sbjct: 307 RGLDIPDVGHVFNYAPPPNSDDYVHRI-GRTGRAGRTGESYTIVSP 351


>gi|182677108|ref|YP_001831254.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182632991|gb|ACB93765.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 484

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 134/366 (36%), Gaps = 39/366 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           SPT  Q  AI   L           +     G+GKT    + M + +E G       + +
Sbjct: 23  SPTPIQAEAIPHALAGRD------ILGIAQTGTGKTAAFTLPMLSRLEQGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   +Y  N ++ V ++ G +  A +   + R     A ++I T   
Sbjct: 77  ILEPTRELAAQVEESFARYGINHKLNVALLIGGVSFAEQENKIMR----GADVLIATPGR 132

Query: 386 FQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L      ++DE  R      +   ++       +    P   +TL  ++
Sbjct: 133 LLDFSERGKLLLTGIEILVIDEADRMLDMGFIPDIER-------ICKLVPFTRQTLFFSA 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               +I+++TE      P++  +   +     I +  V  + G        Q+    E  
Sbjct: 186 TMPPEITRLTETFL-HNPVRIEVARASSTATTITQGLVASAHGPAKRETLRQLIRGAENL 244

Query: 498 ------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N +  V   +   +    S   +HG M    + + +D+FK+G   LL+ + V 
Sbjct: 245 KNAIIFCNRKRDVAVLHKSLQKHGFSAGALHGDMDQRARMTSLDAFKSGDVNLLVCSDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D S +   +        +H++ GR GR       + +      K       ++
Sbjct: 305 ARGLDIPDVSHVFNFDVPTHAEDYVHRI-GRTGRAGRSGVALSIVTSADRKYVDEIEKLI 363

Query: 612 KNTEDG 617
               D 
Sbjct: 364 ARKIDW 369


>gi|15601559|ref|NP_233190.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121588090|ref|ZP_01677839.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
 gi|121730005|ref|ZP_01682420.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
 gi|153819412|ref|ZP_01972079.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
 gi|153823796|ref|ZP_01976463.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
 gi|227812370|ref|YP_002812380.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
 gi|254849961|ref|ZP_05239311.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
 gi|298499594|ref|ZP_07009400.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
 gi|9658230|gb|AAF96702.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547686|gb|EAX57782.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
 gi|121628252|gb|EAX60768.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
 gi|126510058|gb|EAZ72652.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
 gi|126518684|gb|EAZ75907.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
 gi|227011512|gb|ACP07723.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
 gi|254845666|gb|EET24080.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
 gi|297541575|gb|EFH77626.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
          Length = 663

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 29/398 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +   +   QA++MA
Sbjct: 48  SPTPIQAAAIPVLLEGRD------ALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMA 101

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN   + V  I G      + +AL+      AHI++GT    +
Sbjct: 102 PTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS----GAHIVVGTPGRVK 157

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M   P   + ++ ++     +
Sbjct: 158 DLITRDRL---HLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMV 214

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            +I E+   R P    +   N+    +E+   V+   +K   +   +E ++         
Sbjct: 215 KEIVERFL-RNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 273

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 274 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 333

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V +++ +   
Sbjct: 334 ITHVYNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQ 392

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +   D  +  E  +  + Q        +  E    L+E
Sbjct: 393 LPHRD--KVAESRLTKLGQELAADKEFSSLERFADLVE 428


>gi|84385216|ref|ZP_00988248.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
 gi|84379813|gb|EAP96664.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
          Length = 673

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 89/437 (20%), Positives = 169/437 (38%), Gaps = 47/437 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +   +   QA+IMA
Sbjct: 28  SPTPIQAAAIPLLLEGRD------ALGKAQTGTGKTAAFSLPLLNKINLNQHKPQAIIMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   ++   + V  I G      + +AL R     AHI++GT    +
Sbjct: 82  PTRELAIQVAAEIKNLGRDINGLKVLEIYGGASIVDQMRALSR----GAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDI 445
           D +   +L    +DE H F + +  ++ +      V  +L  A    + ++ ++     +
Sbjct: 138 DLLTRDRL---HLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPMV 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
             I ++   R P +  +   N   + + +   V+   +K   +   +E ++         
Sbjct: 195 KTIVDRYL-RNPARVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V K+  +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSQMEEIQ 372

Query: 620 IAEED------LKQRKEGEILGIKQS-------GMPKFLIAQPELHDSLLEI---ARKDA 663
           + + D      + +    E+   K+S       G+   L    E+  + L      R+  
Sbjct: 373 LPQRDEVAAARVAKLGA-ELETEKESKALENFAGLISTLQESLEVDAATLAAMLLKRQQG 431

Query: 664 KH---ILTQDPDLTSVR 677
           K     + +DP + ++ 
Sbjct: 432 KSPLFYVGEDPMIAAIE 448


>gi|28393424|gb|AAO42134.1| putative DEAD/DEAH box RNA helicase [Arabidopsis thaliana]
          Length = 633

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/376 (15%), Positives = 128/376 (34%), Gaps = 47/376 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
            PT  Q  AI  +L+          +     GSGKT      + + +             
Sbjct: 181 KPTPVQRHAIPILLEGRD------LMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSR 234

Query: 322 ---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                AVI++P   LA Q ++  K+++  T + V +  G  P   + + LER       I
Sbjct: 235 TVYPLAVILSPTRELASQIHDEAKRFSYQTGVKVVVAYGGTPINQQLRELER----GVDI 290

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRL------KLTQKATAPHVL 424
           ++ T     D ++  +        L L   D     G + ++                 L
Sbjct: 291 LVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTL 350

Query: 425 LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKT---VIIPINRIDEVIERLKVVL 479
           L +AT     + L    L +     +    +    I      ++  ++   +++ L    
Sbjct: 351 LFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQR 410

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G +       +        +   +   +           IHG  +  ++E  + +FK+
Sbjct: 411 ENGIQGKQALTLV----FVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKS 466

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+   + ++  +  +     +H++ GR GR  +       ++  
Sbjct: 467 GRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI-GRTGRAGKSGLATAFFNDG 525

Query: 600 LSKNSYTRLSVLKNTE 615
            +  +     +++   
Sbjct: 526 NTSLARPLAELMQEAN 541


>gi|119773890|ref|YP_926630.1| ATP-dependent RNA helicase DbpA [Shewanella amazonensis SB2B]
 gi|119766390|gb|ABL98960.1| ATP-dependent RNA helicase DbpA [Shewanella amazonensis SB2B]
          Length = 467

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/449 (16%), Positives = 157/449 (34%), Gaps = 47/449 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + ++ ++ + +        T  Q  ++  IL           I QG  GSGKT    + +
Sbjct: 15  LKLKTELLENLSSMGYHEMTPIQAQSLPAILAGEDV------IGQGKTGSGKTAAFGLGL 68

Query: 315 AAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALER 370
              ++      Q +++ P   LA Q  + I+   +    + V  + G +P   +  +LE 
Sbjct: 69  LNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEH 128

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
                AHII+GT     D ++  +L L  +          R+           ++  +  
Sbjct: 129 ----GAHIIVGTPGRIVDHLERDRLDLSNL-NMLVLDEADRMLEMGFQPQLDAIIARSPR 183

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +TL+ ++     I  I ++     P+   +   +    + +    +  +G +   +  
Sbjct: 184 ERQTLLFSATFPEQIQTIAQQ-VMYNPVMVKVATTHEKSTIAQHFYHLEDDGARMQALQL 242

Query: 491 QIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            + E K        N +   ++          S+  +HG +   D++  +  F N +  +
Sbjct: 243 LLLEHKPESAVVFCNTKRETQKVADDLTAAGFSVLALHGDLEQRDRDETLLQFANKSACV 302

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT V   G+D+     +   +  H     +H++ GR GR     +    ++       
Sbjct: 303 LVATDVAARGLDIDALDAVFNYHVAHDTEVHIHRI-GRTGRAGSKGAAYTFFNDKDGYKI 361

Query: 605 YTRLSVLKNTEDG-------------FLIAEEDLKQ-------RKEGEILG--IKQSGMP 642
                 L+                     A   L+         + G+ILG      G+ 
Sbjct: 362 ALLEEYLERDIQSEPLPSASLLGSMPLAPAMITLQIDGGKKDKLRPGDILGALTGDKGIE 421

Query: 643 KFLIAQPEL--HDSLLEIARKDAKHILTQ 669
              + +  +  + + + + RK AK  L +
Sbjct: 422 GAQVGKILVTDYRAYVAVDRKVAKKALGK 450


>gi|327278500|ref|XP_003224000.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Anolis
           carolinensis]
          Length = 1030

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 147/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 372 WVQCGISMKILNSLKKHGYEKPTPIQAQAIPAIMNGRD------LIGIAKTGSGKTIAFL 425

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 426 LPMFRHIMDQRPLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGVRVVCVYGGTGISE 485

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 486 QIAELKR----GAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQV 541

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 542 M------RIVDNVRPDRQTVMFSATFPRAMEALARRILN-KPIEVQVGGRSVVCSDVEQN 594

Query: 476 KVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E  K   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 595 VIVIEEENKFLKLLELLGHFQEQGAVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQY 654

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FK+G CKLL+AT+V   G+DV    ++I  +  +     +H+  GR GR   
Sbjct: 655 DRDSIINDFKSGVCKLLVATSVAARGLDVKHLMLVINYSCPNHYEDYVHR-AGRTGRAGN 713

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 714 KGYAYTFITEDQARYAGDIIKALE 737


>gi|284035184|ref|YP_003385114.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283814477|gb|ADB36315.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 643

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 152/406 (37%), Gaps = 46/406 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SP+  Q  AI  IL           I Q   G+GKT    I     ++      Q +I+ 
Sbjct: 53  SPSPIQAEAIPPILDGRDV------IGQAQTGTGKTAAFGIPALDLIDVQDRSVQTLILC 106

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E IKK  +    I +E I G      + ++L+       HI+IGT     
Sbjct: 107 PTRELALQVAEEIKKLAKYKRGIRIEAIYGGDSIERQIRSLKS----GVHIVIGTPGRVM 162

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++   L L  V        DE    G ++ ++   +               +T++ ++
Sbjct: 163 DHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEE---------RQTILFSA 213

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
                I +IT+K   + P+   ++     +  IE++   +    K   +C  I+      
Sbjct: 214 TMSKPIMQITQKF-QKDPVLVKVVKKELTNVNIEQVYFEVKSKAKVEVMCRLIDMYDLKL 272

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  R V E    L      +  + HG +    + +VM  F+ GT  +L+AT V  
Sbjct: 273 LLVFCNTKRKVDEIVEDLQIRGYQAEGL-HGDLRQAQRNNVMSKFRAGTTNILVATDVAA 331

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT-RLSVL 611
            GIDV D   +I  +        +H++ GR GR  +                   +    
Sbjct: 332 RGIDVDDVDAVINFDIPLDEEYYVHRI-GRTGRAGKSGRAFSFVGRDEKYRFREIQTYTK 390

Query: 612 KNTEDGFLIAEEDLK-QRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
              E G + + ED+   RK   I  ++Q+ + +       L+D LL
Sbjct: 391 VKVEKGVIPSFEDIVGVRKARFIEQLQQT-IQESK--DLNLYDDLL 433


>gi|74006744|ref|XP_861568.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 12 [Canis familiaris]
          Length = 653

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 144/370 (38%), Gaps = 48/370 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKQ 256

Query: 325 ----VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               +++AP   LA Q YE  +K++  +++   ++ G      + + LER      H+++
Sbjct: 257 YPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER----GCHLLV 312

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP-----HVLLM 426
            T     D ++  K        L+L   D     G + Q  ++ ++ T P     H ++ 
Sbjct: 313 ATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 372

Query: 427 TATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           +AT  P+ + + +   +D      +    +  + I   ++ +   D+    L  +L+   
Sbjct: 373 SAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSFLLDLLNATG 430

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           K       +E KK        +       H   +   IHG  S  D+E  +  F++G   
Sbjct: 431 KDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 484

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++      
Sbjct: 485 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATSFFNERNINI 543

Query: 604 SYTRLSVLKN 613
           +   L +L  
Sbjct: 544 TKDLLDLLVE 553


>gi|33865454|ref|NP_897013.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. WH 8102]
 gi|33632623|emb|CAE07435.1| probable ATP-dependent RNA helicase DeaD [Synechococcus sp. WH
           8102]
          Length = 598

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 134/343 (39%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q++A  +++           + Q   G+GKT    + +   + +G    QA+++A
Sbjct: 67  EPSPIQKAAFPELMLGRD------LVGQAQTGTGKTAAFALPLLERLASGQKTPQALVLA 120

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  K Y+  +  + V  + G      +   L R       +++GT     
Sbjct: 121 PTRELAMQVADSFKAYSAGHPHLKVLAVYGGTDFRSQINTLRR----GVDVVVGTPGRVM 176

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP--RTL 435
           D ++           L+L   DE  R G    ++    Q      V+L +AT  P  R L
Sbjct: 177 DHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQERQVVLFSATMPPEIRRL 236

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D     I  K    K I+   I +    ++    +V+ + G +   I  +    
Sbjct: 237 SKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLDACGGEGVIIFART--- 293

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +++        E     +A+++G +    +E  ++  ++G+  +L+AT V   G+
Sbjct: 294 -----KAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGL 348

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV    ++I  +      A +H++ GR GR       +L   P
Sbjct: 349 DVDRIGLVINYDMPFDSEAYVHRI-GRTGRAGRTGEAVLFVTP 390


>gi|284044842|ref|YP_003395182.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283949063|gb|ADB51807.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 590

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 132/347 (38%), Gaps = 39/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-----VI 326
            PT  Q  AI  +L+          + Q   G+GKT    + +   +E G  A     ++
Sbjct: 37  EPTPIQREAIPPLLEGRD------LLGQAATGTGKTAAFALPILQRMEPGRSAIGPLALV 90

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E + +Y ++    V  I G  P   +  AL+R       +++GT    
Sbjct: 91  LVPTRELAVQVSEALHRYGRSLGARVLPIYGGQPIGRQLNALKR----GVDVVVGTPGRV 146

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATA---PHVLLMTATPIPRTL 435
            D I    L        +L   DE    G  + ++     T       +L +AT  PR  
Sbjct: 147 LDHISRNTLRLDELRIVVLDEADEMLDMGFAEDIESILAETPDGGRQTVLFSATMPPRID 206

Query: 436 VLTSLGDIDISKIT---EKPAGRKP-IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            +      D  +I    E  AG  P ++     + R  +     +V+  E   A  +  +
Sbjct: 207 RIARAHLSDPVRIEIARETSAGDTPLVRQSAYVVARAHKPAALGRVLDVESPTAAIVFCR 266

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    R  V++              +HG M+   ++ VM   +NGT  LL+AT V 
Sbjct: 267 T--------RDEVDQLTETLNGRGYRAEALHGGMTQEQRDRVMARLRNGTADLLVATDVA 318

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             G+DV   + ++  +      + +H++ GRVGR     + I L  P
Sbjct: 319 ARGLDVEQLTHVVNYDVPSSPESYVHRI-GRVGRAGREGAAITLAEP 364


>gi|194745552|ref|XP_001955251.1| GF16329 [Drosophila ananassae]
 gi|190628288|gb|EDV43812.1| GF16329 [Drosophila ananassae]
          Length = 784

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/390 (17%), Positives = 134/390 (34%), Gaps = 50/390 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ AI  I+           +     GSGKT   L+ +   +   G         
Sbjct: 307 KPTPVQKYAIPIIISGRD------LMACAQTGSGKTAAFLVPILNQMYEHGHSAPPQSNR 360

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                      +++AP   LA Q +E  KK+   +++   ++ G    + + + L+R   
Sbjct: 361 QYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDR--- 417

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+I+ T    +D I   K+ L  +     DE  R          Q       L M  
Sbjct: 418 -GCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEP--QIRRIVEQLNMPP 474

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++     I ++         I   +  +    E I +  + + E  K  ++
Sbjct: 475 TGQRQTLMFSATFPKQIQELASDFL-SNYIFLAVGRVGSTSENITQTILWVYEQDKRSYL 533

Query: 489 CPQIEEKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              +   +                 +   +            +  IHG  +  ++E  + 
Sbjct: 534 LDLLSSIRNGPEYCKDNLTLIFVETKKGADSLEEFLFQCNHPVTSIHGDRTQKEREEALR 593

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G C +L+AT V   G+D+     +I  +        +H++ GR GR   +      
Sbjct: 594 CFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRI-GRTGRMGNLGVATSF 652

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           ++          L +L  T+       ED+
Sbjct: 653 FNEKNRNICSDLLELLIETKQEIPNFLEDM 682


>gi|315126209|ref|YP_004068212.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315014723|gb|ADT68061.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 465

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 145/384 (37%), Gaps = 45/384 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +PT  Q  AI  I+       R   +     G+GKT    + +   + +G        +A
Sbjct: 23  TPTPIQAQAIPAIIA------RRDVMAAAQTGTGKTAGFTLPLIERLSSGTKAKSNHVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +++Y +++ +   ++ G +    + + L +       I++ T  
Sbjct: 77  LILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRK----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  + ++++DE  R      +   ++       L+   P  R  ++ S
Sbjct: 133 RLIDLHNQNAVKFDSIEVLVLDEADRMLDMGFIHDIKR-------LIAKMPEKRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  +   N   + + +    + + +K   +   I       
Sbjct: 186 ATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKARKTALLSHLIRSNNWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   ++ FK+G  ++L+AT ++  
Sbjct: 246 VLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALEGFKSGEVRVLVATDIVAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+V+   ++  +  +     +H++ GR GR       I       + + Y     +  
Sbjct: 306 GLDIVELPHVVNYDLPNVYEDYVHRI-GRTGRAGASGHAISFVTVDDAVDLYGIERFIGE 364

Query: 614 T-----EDGFL----IAEEDLKQR 628
                 E+GF     +AE  L  R
Sbjct: 365 LIPRAEEEGFEPANPVAERALDAR 388


>gi|258623163|ref|ZP_05718173.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
 gi|258584555|gb|EEW09294.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
          Length = 663

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 143/365 (39%), Gaps = 27/365 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +   +   QA++MA
Sbjct: 48  SPTPIQAAAIPVLLEGRD------ALGKAQTGTGKTAAFSLPLLNKLNLSQHKPQAIVMA 101

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN   + V  I G      + +AL+      AHI++GT    +
Sbjct: 102 PTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS----GAHIVVGTPGRVK 157

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M   P   + ++ ++     +
Sbjct: 158 DLITRDRL---HLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMV 214

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            +I E+   R P    +   N+    +E+   V+   +K   +   +E ++         
Sbjct: 215 KEIVERFL-RNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 273

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 274 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 333

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V +++ +   
Sbjct: 334 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQ 392

Query: 620 IAEED 624
           +   D
Sbjct: 393 LPHRD 397


>gi|295425677|ref|ZP_06818364.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664]
 gi|295064693|gb|EFG55614.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664]
          Length = 493

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/421 (18%), Positives = 145/421 (34%), Gaps = 44/421 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  Q   I   L           I Q   G+GKT    + +   ++      QAV
Sbjct: 20  GFEEATPIQAETIPLALAGKDV------IGQAQTGTGKTAAFGLPILQNLDKHEKTIQAV 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E + +  ++    V+++ G      + ++L+   H    I++GT   
Sbjct: 74  IIEPTRELAIQTQEELFRLGRDEHARVQVVYGGADIGRQIRSLK---HHVPAILVGTPGR 130

Query: 386 FQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTL 435
             D ++           ++L   DE    G  Q +   L         LL +AT     L
Sbjct: 131 LLDHLKRGTIDLSKTKTVVLDEADEMLDMGFIQDIESILKYVGERKQTLLFSATMPKPIL 190

Query: 436 VL--TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            +    + D ++ KI  K      I    +     ++     +++  +G     +  +  
Sbjct: 191 QIGEKFMHDPEVVKIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGPDLALVFGRT- 249

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+      +    + A IHG +S   + SV+  F+ G  ++L+AT V   
Sbjct: 250 -------KRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKQFRAGKLEILVATDVAAR 302

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   + +   +      + +H++ GR GR  +    +    P       T   + K 
Sbjct: 303 GLDISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGQNGISVTFVTPNEISYMQTIEQLTKK 361

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDL 673
                    +D     +   L   +S +   +      ++        DA  +L     L
Sbjct: 362 KMSPLRPPTDDQALHGQ---LKQAKSEIEDLMNGDLSKYE-------DDANELLENYSAL 411

Query: 674 T 674
            
Sbjct: 412 D 412


>gi|156554534|ref|XP_001605420.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 775

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/380 (22%), Positives = 146/380 (38%), Gaps = 39/380 (10%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           N    + ++I +     PT  Q       L        M+ I Q   GSGKTL  ++   
Sbjct: 117 NFPDYVMEEIRKQGFLEPTAIQAQGWPIAL----SGRDMVGIAQ--TGSGKTLAYILPAT 170

Query: 316 AAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             +          G   +++AP   LAQQ     + +  ++ I    I G  P+  + + 
Sbjct: 171 VHINNQPRLSRGDGPIVLVLAPTRELAQQIQSVARDFGSSSCIRNTCIFGGSPKGPQARD 230

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQK 417
           LER       I I T     D ++           L+L   D     G   Q R  + Q 
Sbjct: 231 LER----GVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI 286

Query: 418 ATAPHVLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                VL+ +AT       L    L D     I             II I +  E   +L
Sbjct: 287 RPDRQVLMWSATWPKEVQALAEDFLTDYIQINIGSLNLAANHNIRQIIEICQEHEKENKL 346

Query: 476 KVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            V+L E   ++       +E KK+ +     +   ++  +   +IAI HG  S  +++ V
Sbjct: 347 AVLLREIGCERGNKTIIFVETKKKVD-----DITKAIKRNGWPAIAI-HGDKSQPERDYV 400

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F+NG   +L+AT V   G+DV D   ++  +  +     +H++ GR GR +   +  
Sbjct: 401 LSEFRNGKTAILVATDVAARGLDVEDVKYVVNFDYPNSSEDYIHRI-GRTGRCQSAGTAY 459

Query: 594 LLYHPPLSKNSYTRLSVLKN 613
             + P  ++ +   +SVL+ 
Sbjct: 460 AYFTPNNARQAKELISVLEE 479


>gi|51245828|ref|YP_065712.1| ATP-dependent RNA helicase DbpA [Desulfotalea psychrophila LSv54]
 gi|50876865|emb|CAG36705.1| probable ATP-independent RNA helicase (DbpA) [Desulfotalea
           psychrophila LSv54]
          Length = 469

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 85/456 (18%), Positives = 166/456 (36%), Gaps = 58/456 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
             T  Q  ++  +L+          + Q   GSGKT    I +   ++      Q ++M 
Sbjct: 24  EMTPIQAESLPHVLEGED------LLAQAKTGSGKTAAFGIGLLHNLDVSLFRVQTLVMC 77

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA+Q    +++  +    I +  + G MP   +  +LE     QAHI++GT    +
Sbjct: 78  PTRELAEQVAGELRRIARFKHNIKITTLCGGMPIKPQLASLEH----QAHIVVGTPGRIE 133

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             ++   L L  V          R+     A     ++       +TL+ ++    +I +
Sbjct: 134 QHLKRESLNLDHVT-TLVLDEADRMLDIGFADTLDAIISYLPRRRQTLLFSATFPDEILR 192

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFR 501
           ++E+   +   + VI+ +   +  I++        KKA  +   +   K        N +
Sbjct: 193 LSEQF--QYKAQRVIVDVEHEENSIQQEFFECKWDKKAAIVSRILATHKPESTLIFCNTK 250

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           +         E    S   IHG +   ++  V+  F NG+  +++AT V   G+D+   S
Sbjct: 251 ANCRDIAEALEAKGFSALAIHGDLDQRERTEVLVRFSNGSSPIMVATDVAARGLDINGLS 310

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            +I  +        +H++ GR GR  +      L  P           ++      F I+
Sbjct: 311 AVINVDLPFESEVYIHRI-GRTGRAGKEGLAFSLMEPGEEFRLEEINRLMGTD---FKIS 366

Query: 622 -----------------EEDLKQRK-------EGEILG--IKQSGMPKFLIAQPELHD-- 653
                               L            G+ILG   K +G+    + +    D  
Sbjct: 367 DVEALAPAGKGVTALPPMVTLSINGGRKTKLRPGDILGALTKDAGIAGSKVGKINCFDFY 426

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           S + I R  A      +  L++ + +  R ++Y ++
Sbjct: 427 SYVAIERSVADE---AERALSTKKIKGRRFIIYRHE 459


>gi|197294292|ref|YP_001798833.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
 gi|171853619|emb|CAM11490.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
          Length = 564

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 148/375 (39%), Gaps = 44/375 (11%)

Query: 260 KIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +  +K L+ + F   T  Q   I +I+Q          I Q   G+GKT    I +   +
Sbjct: 12  EQTKKALQELNFIEATPIQALVIPEIIQGHDV------IGQAQTGTGKTFAFGIPIIEKI 65

Query: 319 E---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHG 374
           +   +  Q++I+ P   L  Q YE +KK  +    I + ++ G      + +ALE     
Sbjct: 66  DYKLSKTQSLILCPTRELTLQVYEELKKLLRYYPQIRIAVVFGGESYTKQFRALES---- 121

Query: 375 QAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
           + H+II T     D I+  K        L L   DE  + G Q+ L   L Q       +
Sbjct: 122 KPHLIIATPGRVIDHIERGKIDLSALKILTLDEADEMLKMGFQEALETILKQIPEERQTV 181

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           L +AT  P    + S    + +KI + P  +  +             IE+   ++ E  K
Sbjct: 182 LFSATLPPSIKQIASKYQKN-TKILQVPVKKLAVN-----------AIEQYYFLVKEFDK 229

Query: 485 AYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
              +   ++ K++       N +  V+   S  +        +HG +    ++ VM++F+
Sbjct: 230 NKLLVRLLDLKRDYSTILFANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFR 289

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  K+LIAT V   GID+ D  +++  +  H     +H++ GR GR  +         P
Sbjct: 290 KGKIKILIATDVAARGIDISDIKMVVNYDLPHEDEVYVHRI-GRTGRAGKKGLAYSFISP 348

Query: 599 PLSKNSYTRLSVLKN 613
                       LK 
Sbjct: 349 RKFSQLKKLEYYLKE 363


>gi|6735368|emb|CAB68189.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
          Length = 603

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 135/363 (37%), Gaps = 34/363 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------- 323
           PT  Q  AI  +L           +     GSGKT      + + +              
Sbjct: 174 PTPVQRHAIPILLA------ERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRA 227

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               AVI++P   LA Q ++  KK++  T + V +  G  P   + + LER       I+
Sbjct: 228 VYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELER----GCDIL 283

Query: 380 IGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T     D ++  ++ + ++     DE  R          Q       + M    + +T
Sbjct: 284 VATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEP--QIRKIVEQMDMPPRGVRQT 341

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I ++         I   +  +    ++I +    + E  K   +   +  
Sbjct: 342 MLFSATFPSQIQRLAADFM-SNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHA 400

Query: 495 KKESNFRSVV--ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           ++E+  ++    +   +           IHG  +  ++E  + SFK G   +L+AT V  
Sbjct: 401 QRETQDKTKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAA 460

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+   + ++  +  +     +H++ GR GR  +       ++   ++ + +   +++
Sbjct: 461 RGLDIPHVAHVVNFDLPNDIDDYVHRI-GRTGRAGKSGIATAFFNENNAQLARSLAELMQ 519

Query: 613 NTE 615
              
Sbjct: 520 EAN 522


>gi|320163352|gb|EFW40251.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
           30864]
          Length = 1073

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 148/382 (38%), Gaps = 43/382 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            PT  Q  A+  ++           I     GSGKTL  ++ M   +        + G  
Sbjct: 392 KPTPIQAQAVPAVMSGRD------LIAIAKTGSGKTLAFVLPMIRHILAQPPLSADDGPI 445

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   LA Q Y   K++    Q+    + G      +   L+R     A II+ T 
Sbjct: 446 GLILTPTRELAVQTYTECKRFAAPNQLRTVCLYGGSAITEQIADLKR----GAEIIVCTP 501

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +           ++  +++DE  R           +            P  +T+
Sbjct: 502 GRMIDMLTANSGRVTNLRRVTYLVLDEADRMFDMGFEPQVMRIVNNIR------PARQTV 555

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI--- 492
           + ++     +  +  K     P++ ++   + + + I++  +V+ E +K   +   +   
Sbjct: 556 LFSATFPRSMETLAYKILHHSPLQIIVGGRSIVSKEIDQHVLVIPEAEKYLRLLELLGVW 615

Query: 493 -EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            EE     F    E  + L +   +S      +H  +   D+E  + +FK G  +LLIAT
Sbjct: 616 QEEGSVIVFVERQEAADMLLKSLYASGYPCLSLHAGLDQGDREETLIAFKAGDVRLLIAT 675

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           +V   G+DV +  +++  +A +     +H++ GR GR     +      P   + +   L
Sbjct: 676 SVAARGLDVKELKLVVNYDAPNHYEDYVHRV-GRTGRAGRKGTSYTFLTPEQGRFAGDIL 734

Query: 609 SVLKNTEDGFLIAEEDLKQRKE 630
           + L+    G  + EE LKQ KE
Sbjct: 735 NALQ--LSGANVPEE-LKQLKE 753


>gi|116628939|ref|YP_814111.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238853538|ref|ZP_04643910.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4]
 gi|311111251|ref|ZP_07712648.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
 gi|116094521|gb|ABJ59673.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC
           33323]
 gi|238833834|gb|EEQ26099.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4]
 gi|311066405|gb|EFQ46745.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
          Length = 485

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 134/348 (38%), Gaps = 39/348 (11%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE  I  +L+          I Q   G+GKT    + +   ++      QA+
Sbjct: 20  GFEEATPIQEKTIPLVLEGKDV------IGQAQTGTGKTAAFGLPILQNLDKQHDSIQAI 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E + +  ++ +  V+++ G      + +AL++       I++GT   
Sbjct: 74  VIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQ----TPAILVGTPGR 129

Query: 386 FQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D ++           ++L   DE    G  Q +           +L  A+   +TL+ 
Sbjct: 130 LLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDI---------ESILNYASSKHQTLLF 180

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I +I EK     P    I        +I++  V   E +K   +C  I+ +  
Sbjct: 181 SATMPKPILRIGEKFM-HDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLIDVQNP 239

Query: 497 --ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L     +     A IHG +S   + SV+  F+ G   +L+AT V 
Sbjct: 240 DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVA 299

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+   S +   +      + +H++ GR GR  +    +    P 
Sbjct: 300 ARGLDISGVSHVYNYDIPQDPDSYVHRI-GRTGRAGQNGMSVTFVTPN 346


>gi|326519741|dbj|BAK00243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 649

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 77/367 (20%), Positives = 141/367 (38%), Gaps = 44/367 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +P+  Q  +    L+          +     GSGKTL  L+     V+        G   
Sbjct: 183 APSPIQAQSWPIALKG------SDIVAVAKTGSGKTLGYLLPGFILVKNLRHNSRDGPTV 236

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q  +   K+ ++++I    + G  P+  + + LER     A I++ T  
Sbjct: 237 LVLSPTRELATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLRDLER----GADIVVATPG 292

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT 434
              D ++  K        L+L   D     G   Q R  + Q       L+ TAT     
Sbjct: 293 RLNDILEMGKVSLRQVAYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPREV 352

Query: 435 L-----VLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKVVLSEGKKAYWI 488
                 +LT+   ++I    E  A +   + V +  +      ++++      G K    
Sbjct: 353 RKIASDLLTNPVQVNIGNTDELVANKSITQYVEVTTSMEKGRRLDQILRQQEPGSKVIIF 412

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C        S  R   +   +L   + +S   IHG  S  +++SV+  F+ G C +L+AT
Sbjct: 413 C--------STKRMCDQLSRNLSRQYGASA--IHGDKSQAERDSVLSEFRTGRCPILVAT 462

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV D  +++  +        +H++ GR GR          +    SK +   +
Sbjct: 463 DVAARGLDVKDIRVVVNYDFPTGVEDYVHRI-GRTGRAGASGIAYTFFCDQDSKYASDLV 521

Query: 609 SVLKNTE 615
            +L+   
Sbjct: 522 KILEGAN 528


>gi|195130219|ref|XP_002009550.1| GI15175 [Drosophila mojavensis]
 gi|193908000|gb|EDW06867.1| GI15175 [Drosophila mojavensis]
          Length = 1229

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 150/378 (39%), Gaps = 42/378 (11%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K    +LR + F  PT  Q  AI  I+           I     GSGKTL  ++ M   
Sbjct: 541 SKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRD------LIGIAKTGSGKTLAFILPMFRH 594

Query: 318 VEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +          G  A+IMAP   L  Q  + I+K++++  +    + G    + +   L+
Sbjct: 595 ILDQPALEDGDGAIAIIMAPTRELCMQIGKDIRKFSRSLGLRPVCVYGGTGISEQIAELK 654

Query: 370 RIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           R     A II+ T     D +           ++  V++DE  R                
Sbjct: 655 R----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVM----- 705

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             ++    P  +T++ ++     +  +  +   +KP++ ++   + + + +E+  V+LS+
Sbjct: 706 -RIIDNVRPDRQTVMFSATFPRQMEALARR-ILKKPVEVIVGGRSVVCKDVEQHVVILSD 763

Query: 482 GKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534
             K + +   +   +E      F    E  + L      +      +HG +   D++S +
Sbjct: 764 EAKFFKLLELLGVYQETGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTI 823

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR         
Sbjct: 824 IDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHR-CGRTGRAGNKGCAFT 882

Query: 595 LYHPPLSKNSYTRLSVLK 612
              P  S+ +   +  L+
Sbjct: 883 FITPEQSRYAGDVIRALE 900


>gi|89092720|ref|ZP_01165673.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89083232|gb|EAR62451.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 427

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 150/373 (40%), Gaps = 37/373 (9%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
              Q  L+N+ +  PT  Q  AI  +L+          + +   G+GKT    + +   +
Sbjct: 13  PELQFTLKNLGYEQPTPIQSQAIPLVLRG------DDLLAEAQTGTGKTASFALPIIEKL 66

Query: 319 EAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                      +A+++AP   LA Q  +   +Y ++  + V  + G +P  ++ K L+R 
Sbjct: 67  SKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDLGMRVISVYGGVPVENQIKRLKR- 125

Query: 372 AHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
                 I++ T     D ++       KL  +++DE  R      +   QK      ++ 
Sbjct: 126 ---GTDILVATPGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQK------IMD 176

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
            A    +TL+ T+  D  +  + E      P K  + P N   + I +    +  G+KA 
Sbjct: 177 YAADDRQTLLFTATADESVEVLAEFYLN-NPTKIKVTPRNSTAKQIRQFAYQVDYGQKAD 235

Query: 487 WICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNG 540
            +   I E K      F    +R + L ++      + A IHG  S  ++  +++ F  G
Sbjct: 236 ILSYLITEGKWGQTLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAG 295

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+D+     ++  +  +   A +H++ GR GR  E    + L  P  
Sbjct: 296 DLHVLVATDVAARGLDIESLPYVVNYDLPNQPEAYVHRI-GRTGRAGETGEAVSLVAPAE 354

Query: 601 SKNSYTRLSVLKN 613
            +       ++K 
Sbjct: 355 REFLQRIEKLIKQ 367


>gi|85057334|ref|YP_456250.1| superfamily II DNA/RNA helicase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789439|gb|ABC65171.1| superfamily II DNA and RNA helicase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 547

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/358 (22%), Positives = 140/358 (39%), Gaps = 39/358 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  Q   I +I++          I Q   G+GKT    I +   +       Q++I+ P 
Sbjct: 27  TPIQALVIPEIIKGHDV------IGQAQTGTGKTFAFGIPIIEKINPKIQKTQSLILCPT 80

Query: 331 GILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             L  Q YE +KK  +  Q I + ++ G      + ++LE     + H+II T     D 
Sbjct: 81  RELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQFRSLEA----KPHLIIATPGRAIDH 136

Query: 390 IQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           ++  K        L L   DE  + G Q+ L           +L       +T++ ++  
Sbjct: 137 LERGKIDLSALKILTLDEADEMLKMGFQEAL---------ETILKKIPEERQTVLFSATL 187

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--- 498
              I KI  K      I  V +  N     IE+   ++ E  KA  +   ++ KK+    
Sbjct: 188 PPFIKKIASKYQKDTKILQVPVK-NIAVNAIEQNYFLVKEVDKAKLLVRLLDLKKDYSTI 246

Query: 499 ---NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +  V+   +  +        +HG +    ++ VM++F+ G  K+LIAT V   G+
Sbjct: 247 LFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAARGL 306

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           D+ D  ++I  +  H     +H++ GR GR  +      L  P            LK 
Sbjct: 307 DISDIKMVINYDLPHEDEVYVHRI-GRTGRAGKKGLAYSLISPRKVSQLKKLEYYLKE 363


>gi|71005310|ref|XP_757321.1| hypothetical protein UM01174.1 [Ustilago maydis 521]
 gi|74703958|sp|Q4PFD9|PRP5_USTMA RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|46096725|gb|EAK81958.1| hypothetical protein UM01174.1 [Ustilago maydis 521]
          Length = 1156

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 56/443 (12%)

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260
              +AF     P + +D       + RL  D +         +R +   +     +  G 
Sbjct: 434 PFNKAFYHP--PAEIQDMSEELANQIRLEMDAIT--------VRGRDCPKPLTKWSHCGL 483

Query: 261 IAQKI--LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            A  +  ++ + +S PT  Q  A+  I+           I     GSGKT+  L+ M   
Sbjct: 484 PASCLDVIKRLGYSAPTPIQSQAMPAIMSGRD------IIGVAKTGSGKTMAFLLPMFRH 537

Query: 318 VEAGGQA--------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           ++             +IM P   LA Q Y  ++ + +   +    + G  P + +   ++
Sbjct: 538 IKDQRPVEPSEGPVGIIMTPTRELAVQIYREMRPFIKALGLRAACVYGGAPISEQIAEMK 597

Query: 370 RIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           +     A I++ T     D +          Y++  +++DE  R           K    
Sbjct: 598 K----TADIVVATPGRLIDLLTANSGRVTNLYRVTYLVLDEADRMFDMGFEPQVMKILNN 653

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                   P  +T++ ++     +  +  K    KP++  +   + +   IE++  V SE
Sbjct: 654 IR------PDRQTVLFSATFPKQMESLARKVLKNKPLEITVGGRSVVAAEIEQIVEVRSE 707

Query: 482 GKKAYWICPQIEE--KKESNFR-----SVVERFNSLHEHFTSSIAI---IHGRMSDIDKE 531
             K + +   + E   +E + R        E  + L +       +   +HG    +D++
Sbjct: 708 DTKFHRLLEILGELYNREKDARTLIFVDRQEAADDLLKDLIRKGYVTMSLHGGKDQVDRD 767

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             +  FK G   ++ AT+V   G+DV    ++I  +  +     +H+  GR GR  +  +
Sbjct: 768 ETISDFKAGNVPIVTATSVAARGLDVKQLKLVINYDVPNHMEDYVHR-AGRTGRAGQKGT 826

Query: 592 CILLYHPPLSKNSYTRLSVLKNT 614
           CI    P   + +   ++ LK +
Sbjct: 827 CITFITPEQDRYARDIIAALKAS 849


>gi|225441549|ref|XP_002281113.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 622

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/375 (16%), Positives = 132/375 (35%), Gaps = 45/375 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
            PT  Q  AI   L           +     GSGKT      + + +  G          
Sbjct: 185 KPTPVQRHAIPISLSGKD------LMACAQTGSGKTAAFCFPIISGIMTGQFAQRPRGAR 238

Query: 322 ---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A+I++P   L+ Q ++  +K++  T + V +  G  P   + + LER       I
Sbjct: 239 TVYPLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPINQQLRELER----GVDI 294

Query: 379 IIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T     D ++  ++ L ++     DE  R          Q       + M    + +
Sbjct: 295 LVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEP--QIRKIVEQMDMPPPGVRQ 352

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    +I ++         I   +  +    ++I +    + E  K   +   + 
Sbjct: 353 TMLFSATFPKEIQRLASDFL-SSYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLH 411

Query: 494 EKKES-------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            ++ +               +   +               IHG  +  ++E  + SFK+G
Sbjct: 412 AQRANGAHGKQSLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREHALRSFKSG 471

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+D+   + ++  +  +     +H++ GR GR  +       ++   
Sbjct: 472 NTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI-GRTGRAGKTGLATAFFNENN 530

Query: 601 SKNSYTRLSVLKNTE 615
           S  +     +++   
Sbjct: 531 SSLARPLADLMQEAN 545


>gi|332991693|gb|AEF01748.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
          Length = 457

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 132/345 (38%), Gaps = 38/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q+ AI  IL+          +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQQQAIPIILEGKD------ILAAAQTGTGKTAGFSLPLLHRLLDGRPAASNCVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +K +++   +   ++ G +    + KAL         ++I T  
Sbjct: 77  LILTPTRELAAQVEENVKSFSEFLPLKTAVVFGGVGINPQMKALRS----GVDVLIATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRT 434
              D     ++++ +L  +++DE  R      +   ++      T    LL +AT     
Sbjct: 133 RLLDLYQQNAVKFSQLETLVLDEADRMLDMGFIHDIKRILKLLPTKRQTLLFSATFSSEI 192

Query: 435 LVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
             L      +  K++  PA      ++  ++PI++  +    + ++   G K   +  + 
Sbjct: 193 TTLAQTITNNPEKVSTAPANTTVETVQQHLVPIDKSKKTAALISLIKQNGWKQVLVFSRT 252

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +              + L      S AI HG  S   +   +  FK+G   +L+AT +  
Sbjct: 253 KHGA-------NRIADKLSRARIPSAAI-HGNKSQGARTKALSEFKSGEIDVLVATDIAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            GID+ +  I+I  +  +     +H++ GR GR            
Sbjct: 305 RGIDINELPIVINIDLPNTPADYVHRI-GRTGRAGASGQAWSFVS 348


>gi|148643558|ref|YP_001274071.1| helicase [Methanobrevibacter smithii ATCC 35061]
 gi|222444945|ref|ZP_03607460.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350482|ref|ZP_05975899.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
           2374]
 gi|148552575|gb|ABQ87703.1| helicase [Methanobrevibacter smithii ATCC 35061]
 gi|222434510|gb|EEE41675.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861264|gb|EFC93562.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
           2374]
          Length = 429

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 129/358 (36%), Gaps = 35/358 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            P+  QE  I + L+ +        I Q   G+GKTL   + +   +   +   QA+++ 
Sbjct: 26  EPSPIQELTIPEALKGID------IIGQAQTGTGKTLAFTVPLLQKIFIPDNSPQAIVLC 79

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   L  Q    I K   + + + +  + G  P   + + L +      H++IGT     
Sbjct: 80  PTRELCIQVAGEIGKIGSHMKKLKILPVYGGQPIGRQIRVLNK----GVHVVIGTPGRVL 135

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVL 437
           D I+   L L  +        DE    G ++ +   L         LL +AT       +
Sbjct: 136 DHIERKTLDLKGISTVVLDEADEMLDMGFREDIEKILRHTPKQRQTLLFSATMPKEIKRI 195

Query: 438 TSLGD--IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           T          K+ +       I          D++    +++         +       
Sbjct: 196 TKFYQKKPKHLKVAQSQMTVPEITQYYFETKEKDKLENLTRLIDVYDVNLGLVF------ 249

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +  V+       +   +   IHG M+   ++ VM+ F+NG  ++LIAT V   GI
Sbjct: 250 --CNTKKRVDWVAKNLRNRGYAAEGIHGDMNQKSRDKVMNKFRNGNIEILIATDVAARGI 307

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           DV +  +++  +        +H++ GR GR   +             +  T   V K+
Sbjct: 308 DVPNVEVVVNYDVPQNPEYYVHRI-GRTGRAGNMGYAFTFVAGKEIYSLRTIKKVTKS 364


>gi|260365571|ref|ZP_05778108.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260877635|ref|ZP_05889990.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260895944|ref|ZP_05904440.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308085216|gb|EFO34911.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308090909|gb|EFO40604.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308114339|gb|EFO51879.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 417

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 148/372 (39%), Gaps = 41/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-----AVI 326
           +PT  QE +I  +L+          +     G+GKT    + +  AV+   +     A+I
Sbjct: 25  TPTPVQEKSIPHVLEGKD------LLAAAQTGTGKTAAFGLPIIQAVQQKKRNGTPHALI 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ ++ + +Y ++T + +  + G      ++  LE      A I+I T    
Sbjct: 79  LVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLEE----GADILIATPGRL 134

Query: 387 QDSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLV 436
            D +        +   L+L   D     G    L+  L +      ++L +AT   R   
Sbjct: 135 LDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQIMLFSATFEKRIKT 194

Query: 437 LTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +         ++   PA      +K ++ P+++  +      ++ S   +   +  + ++
Sbjct: 195 IAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQVLVFTKTKQ 254

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             +       E    L      +++I +G  S   ++  +D FK G  + LIAT V   G
Sbjct: 255 GSD-------ELAKELKLDGIKAVSI-NGDKSQGARQRALDEFKQGKVRALIATDVAARG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+ +   ++  +        +H++ GR GR  +    + L    +S++    L  ++  
Sbjct: 307 LDIQELEQVVNFDMPFKAEDYVHRI-GRTGRAGKSGLAVSL----MSRDEEYLLRAIETL 361

Query: 615 EDGFLIAEEDLK 626
            D   + +E L+
Sbjct: 362 LDQ-RLPQEWLE 372


>gi|163800381|ref|ZP_02194282.1| hypothetical protein 1103602000595_AND4_06859 [Vibrio sp. AND4]
 gi|159175824|gb|EDP60618.1| hypothetical protein AND4_06859 [Vibrio sp. AND4]
          Length = 619

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 143/365 (39%), Gaps = 27/365 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   ++      QA+++A
Sbjct: 28  SPTPIQAAAIPHLLEG------ADALGKAQTGTGKTAAFSLPLLNKLDLDQRKPQAIVLA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   +N   + V  I G      + +AL       AH+I+GT    Q
Sbjct: 82  PTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL----KNGAHVIVGTPGRVQ 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDI 445
           D I   +L    +DE   F + +  ++        V  ++  +    + ++ ++     +
Sbjct: 138 DLINRERL---HLDEVKTFVLDEADEMLNMGFVDDVTAIMEHSPDSAQRVLFSATMPPML 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
             I E+   R P+   +   N   + +++   V+   +K   +   +E ++         
Sbjct: 195 KSICERFL-RSPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKKGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V K++ +   
Sbjct: 314 INHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQ 372

Query: 620 IAEED 624
           +   D
Sbjct: 373 LPLRD 377


>gi|73969109|ref|XP_860668.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 11 [Canis
           familiaris]
          Length = 651

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 157/449 (34%), Gaps = 59/449 (13%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 39  RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 93

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 147

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 148 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 207

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 208 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 263

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 264 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 323

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 324 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 375

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGI-DVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            +++ V++ F++G   +LIAT V   G+ +V D   +I  +  +     +H++ GR  R 
Sbjct: 376 PERDWVLNEFRSGKAPILIATDVASRGLGNVEDVKFVINYDYPNSSEDYVHRI-GRTARS 434

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTE 615
               +    + P   K +   + VL+   
Sbjct: 435 TNKGTAYTFFTPGNLKQARELIKVLEEAN 463


>gi|91228876|ref|ZP_01262779.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
 gi|91187564|gb|EAS73893.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
          Length = 419

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/362 (19%), Positives = 141/362 (38%), Gaps = 40/362 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-----QAVI 326
           +PT  QE +I  +L           +     G+GKT    + +   V+        QA+I
Sbjct: 25  TPTPVQEKSIPHVLAGK------NLLAAAQTGTGKTAAFGLPIIQTVQQKKLNGTPQALI 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ ++ + +Y+  T++ +  + G      +++ LE      A I+I T    
Sbjct: 79  LVPTRELAQQVFDNLNQYSAETELRIVCVYGGTSIGVQKRKLEE----GADILIATPGRL 134

Query: 387 QDSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLV 436
            D +        +   L+L   D     G    L+    +      +LL +AT   R   
Sbjct: 135 LDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQILLFSATFEKRIKT 194

Query: 437 LTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +         ++   PA      +  ++ P+++  +      ++ S   +   +  + ++
Sbjct: 195 IAYKLMESPVEVEVSPANTTAETVTQMVYPVDKKRKRELLAYLIGSRNWQQVLVFTKTKQ 254

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             +       E    L      +++I +G  S   ++  +D FK G  + LIAT V   G
Sbjct: 255 GSD-------ELAKELKLDGIKAVSI-NGDKSQGARQRALDEFKQGKVRALIATDVAARG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+ +   ++  +        +H++ GR GR  +    + L    +S++    L  ++N 
Sbjct: 307 LDIQELEQVVNFDMPFKAEDYVHRI-GRTGRAGKSGLAVSL----MSRDEEYLLQAIENL 361

Query: 615 ED 616
            D
Sbjct: 362 LD 363


>gi|258577027|ref|XP_002542695.1| ATP-dependent RNA helicase p62 [Uncinocarpus reesii 1704]
 gi|237902961|gb|EEP77362.1| ATP-dependent RNA helicase p62 [Uncinocarpus reesii 1704]
          Length = 1336

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 138/368 (37%), Gaps = 43/368 (11%)

Query: 272  SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
             PT  Q       L           +   + GSGKTL   +     + A        G  
Sbjct: 941  KPTPIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPI 994

Query: 324  AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             +++AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T 
Sbjct: 995  VLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPRGPQIRDLAR----GVEVCIATP 1050

Query: 384  ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
                D ++  K        L+L   D     G   Q R  + Q        + +AT    
Sbjct: 1051 GRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMWSATWPKE 1110

Query: 433  -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIP----INRIDEVIERLKVVLSEGKKAYW 487
             R L    L D     I  +        T I+       + D +I+ ++ ++ + K    
Sbjct: 1111 VRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMIQHMERIMDDKKSKIL 1170

Query: 488  ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            I            R   E    L +    +++I HG     +++ V++ FK G   +++A
Sbjct: 1171 IFT-------GTKRVADEITRFLRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVA 1222

Query: 548  TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
            T V   GIDV D + ++  +  +     +H++ GR GR     + I L+    +K +   
Sbjct: 1223 TDVASRGIDVRDITHVLNYDYPNNSEDYVHRI-GRTGRAGANGTAITLFTTDNAKQARDL 1281

Query: 608  LSVLKNTE 615
            +++L  ++
Sbjct: 1282 VNILTESK 1289


>gi|28900463|ref|NP_800118.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365616|ref|ZP_05778137.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
 gi|260877415|ref|ZP_05889770.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
 gi|260898897|ref|ZP_05907338.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
 gi|260901269|ref|ZP_05909664.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
 gi|28808843|dbj|BAC61951.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308089202|gb|EFO38897.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
 gi|308090808|gb|EFO40503.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
 gi|308106808|gb|EFO44348.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
 gi|308111459|gb|EFO48999.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
          Length = 643

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 139/369 (37%), Gaps = 35/369 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   ++      QA+++A
Sbjct: 28  SPTPIQAAAIPHLLEG------ADALGKAQTGTGKTAAFSLPLLNKLDLDQRKPQAIVLA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   +N   + V  I G      + +AL       AH+++GT    Q
Sbjct: 82  PTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL----KNGAHVVVGTPGRVQ 137

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAP--HVLLMTAT--PIPRTL 435
           D I   +L L  V        DE    G    +    +        +L +AT  P+ + +
Sbjct: 138 DLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPMLKNI 197

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           V   L D     +  K      ++     +  +++     +++ +E   A  +  +    
Sbjct: 198 VERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFVRT--- 254

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+
Sbjct: 255 -----RQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGL 309

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   + +   +      + +H++ GR GR       ILL      +   T   V K++ 
Sbjct: 310 DVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSM 368

Query: 616 DGFLIAEED 624
           +   +   D
Sbjct: 369 EEIQLPLRD 377


>gi|327482576|gb|AEA85886.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri DSM 4166]
          Length = 460

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/453 (17%), Positives = 174/453 (38%), Gaps = 50/453 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + + + T  Q  ++  +L+          I Q   GSGKT    IA+   +     G
Sbjct: 19  LEALGYATMTPIQAQSLPLMLKGHD------LIAQAKTGSGKTAAFGIALLDPLNPRYFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    I +  + G +    +  +LE      AH+I+
Sbjct: 73  CQALVLCPTRELADQVAKELRRLARAADNIKILTLCGGVSIGPQIASLEH----GAHVIV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L L  ++        + L +        ++  T     +TL+ ++ 
Sbjct: 129 GTPGRVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAEIIGQTPA-KRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
               I ++          + V +     D  IE+    +   ++   +   +   +  + 
Sbjct: 188 YPASIEQLAASFMRAP--QQVRVESLHTDSQIEQRFYEIDPEQRLDAVARLLASFRPESC 245

Query: 501 RSVV---ERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            +     ++   L E+  +   S A ++G +   D++ V+  F N +  +L+AT V   G
Sbjct: 246 VAFCFTKQQCQELVEYLNAKGISAAALNGDLEQRDRDQVLAMFANRSLSVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV---- 610
           +D+    ++I           +H++ GR GR         L  P  +  +     +    
Sbjct: 306 LDIDALDMVINVELARDPEIHVHRI-GRTGRAGNQGLAASLVAPAEAHRAQAIEKLQKSP 364

Query: 611 -----LKNTEDG-----------FLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELH 652
                L   + G             IA     + + G+ILG     +G+P   + +  + 
Sbjct: 365 LNWHSLDELKAGAGAPLQPPMVTLCIAAGRKDKLRPGDILGALTGDAGLPGSQVGKIAIF 424

Query: 653 D--SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           D  + + + R  AK  L +  +   ++G+S+++
Sbjct: 425 DFQAFVAVERDAAKQALKRLNE-GKIKGRSLKV 456


>gi|3986285|dbj|BAA34993.1| DjVLGA [Dugesia japonica]
          Length = 726

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 144/374 (38%), Gaps = 49/374 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------- 323
           PT  Q  A+  I   M +++ M        GSGKT   LI + + +   G          
Sbjct: 234 PTPVQRYAVPII---MQRRDLM---ACAQTGSGKTAAFLIPLLSMMYQDGPGNSLSHSGY 287

Query: 324 ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                 A+I+AP   LA Q Y+  +K++  + +   ++ G      + + + +  +    
Sbjct: 288 KKEYPVALILAPTRELAVQIYDEARKFSYRSLVRPCVVYGGRDIRGQLQDISQGCN---- 343

Query: 378 IIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAP------HV 423
           +++ T     D ++  K+ L  +        D     G + +++   + T          
Sbjct: 344 MLVATPGRLSDMLERCKIGLDCIRYLVLDEADRMLDMGFEPQIRKIVEQTNMPPPGQRQT 403

Query: 424 LLMTATPIPRTLVLT--SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           L+ +AT      +L    L D    ++ +  +  + I   I+ ++  +E  + L  +L++
Sbjct: 404 LMFSATFPREIQMLASDFLKDYLFLRVGKVGSTSQNITQRIVYVDE-NEKRDHLLDILTD 462

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 I   +E       +   +          S +A IHG  S  D+E  + SF+ G+
Sbjct: 463 IDSDSLILVFVET------KRGADALEGFLHTEGSCVASIHGDRSQSDRELALQSFREGS 516

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   G+D+ +   +I  +        +H++ GR GR   +   I  Y    +
Sbjct: 517 TPILVATRVAARGLDIPNVKFVINYDLPTDIEEYVHRI-GRTGRVGNLGEAISFYTDKNN 575

Query: 602 KNSYTRLSVLKNTE 615
             +   + +L    
Sbjct: 576 NVAKELVDILLEAN 589


>gi|299133793|ref|ZP_07026987.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
 gi|298591629|gb|EFI51830.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
          Length = 472

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 131/347 (37%), Gaps = 38/347 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI  +L      +R   +     G+GKT   ++ M   +E G       + +
Sbjct: 23  TPTPIQEQAIPHVL------DRRDVLGIAQTGTGKTAAFVLPMLTLLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   +Y    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKENFDRYGVGQKLNVALLIGGVSFGDQDAKLGR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKL-----ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL      L+++DE  R      +   ++       +    P   +TL  T+
Sbjct: 133 LLDHTERGKLLMTGVELLVIDEADRMLDMGFIPDIER-------ICKLVPFTRQTLFFTA 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               +I +ITE          V  P +    V +       E  +   +  Q+    +  
Sbjct: 186 TMPAEIRRITETFLHNPVKVEVSKPASTAVTVTQFQISTGKESHEKRELLRQLLRDAKDL 245

Query: 498 ------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N +  V   +   +      A +HG M    + + ++ F+ G   LL+A+ V 
Sbjct: 246 KNAIIFCNRKREVAILHKSLQKHGFGAAALHGDMDQSARMAALEQFRKGELPLLVASDVA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             G+D+ + S +   +  H     +H++ GR GR   + + I +  P
Sbjct: 306 ARGLDIPEVSHVFNFDVPHHPDDYVHRI-GRTGRAGRLGTAISIVSP 351


>gi|315635445|ref|ZP_07890711.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
 gi|315480203|gb|EFU70870.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
          Length = 516

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/355 (20%), Positives = 135/355 (38%), Gaps = 37/355 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAP 329
            P+  QE AI  IL           + Q   G+GKT    + +   ++A  G +AV++ P
Sbjct: 23  EPSPIQEQAIPYILDGRD------IVGQAHTGTGKTAAFGLPILNKIKAKSGVEAVVIVP 76

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  + + ++ +   I    + G    A + K +E  +     +I+ T   F D 
Sbjct: 77  TRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIENSS-----VIVATPGRFLDL 131

Query: 389 ------SIQYYKLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
                 SI+   +IL   DE    G     +   T        LL +AT     + L  T
Sbjct: 132 LRGDKISIKPKFVILDEADEMLDMGFLDDIKEIFTFLPENRQTLLFSATMPTAIKNLAKT 191

Query: 439 SLGDIDISKITEKPAGRKPIKT--VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            L + +   +T+       I     ++     D+ +  +++   +  K   I  +     
Sbjct: 192 ILKEPEFVTLTKSDVTNSKITQTFYVVDEKERDDAL--IRLFDFKNPKKSIIFCRT---- 245

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+R ++           +HG M    +E  + +FK+   ++LIAT V   G+D
Sbjct: 246 ----KKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILIATDVAARGLD 301

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           V D + +   +      + +H++ GR GR  +    I +  P   +        +
Sbjct: 302 VNDVTHVFNYHLPFDSESYVHRI-GRTGRAGKEGMAISIVTPHEFRMLQKIEKSI 355


>gi|167740106|ref|ZP_02412880.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 14]
          Length = 323

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 18/244 (7%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 53  KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 105

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 106 IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 164

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 165 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 223

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 224 LDVPPLADAVRMLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 283

Query: 253 IPIN 256
             + 
Sbjct: 284 PAMP 287


>gi|167590125|ref|ZP_02382513.1| ATP-dependent DNA helicase RecG [Burkholderia ubonensis Bu]
          Length = 262

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 18/236 (7%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      I E+    I    G +   + 
Sbjct: 36  KTADKLAKL------GLTRSIDLVLHLPMRYEDETTLTPIDELLPGGIAQTEGVVFD-NE 88

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + + DG G ++ L F       +K +   G+++ V G ++     + MVH
Sbjct: 89  VAYRPRRQLVVKIQDGDGAQLVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGMEMVH 147

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +       ++  VY    G+S    +K I  A+ R P LPE +  ++    L+ 
Sbjct: 148 PAVRVVDEHAPLPQVLTPVYPSTAGVSQAYLRKAIENAVERTP-LPELLPPEIDRAYLKP 206

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFK 248
              PS+A+A  I+H+P    D     + + PA  R+ +DELLA Q++L    ++ +
Sbjct: 207 LGVPSLADAVRILHHPGVDSDEPALMDGSHPAWTRIKFDELLAQQLSLKRAHEERR 262


>gi|229506042|ref|ZP_04395551.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
 gi|229510102|ref|ZP_04399582.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
 gi|229517768|ref|ZP_04407213.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
 gi|229605573|ref|YP_002876277.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
 gi|229345804|gb|EEO10777.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
 gi|229352547|gb|EEO17487.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
 gi|229356393|gb|EEO21311.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
 gi|229372059|gb|ACQ62481.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
          Length = 653

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 29/398 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +   +   QA++MA
Sbjct: 38  SPTPIQAAAIPVLLEGRD------ALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMA 91

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN   + V  I G      + +AL+      AHI++GT    +
Sbjct: 92  PTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS----GAHIVVGTPGRVK 147

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M   P   + ++ ++     +
Sbjct: 148 DLITRDRL---HLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMV 204

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            +I E+   R P    +   N+    +E+   V+   +K   +   +E ++         
Sbjct: 205 KEIVERFL-RNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 263

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 264 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 323

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V +++ +   
Sbjct: 324 ITHVYNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQ 382

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +   D  +  E  +  + Q        +  E    L+E
Sbjct: 383 LPHRD--KVAESRLTKLGQELAADKEFSSLERFADLVE 418


>gi|147671700|ref|YP_001215271.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|153216449|ref|ZP_01950468.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
 gi|153802978|ref|ZP_01957564.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
 gi|153830498|ref|ZP_01983165.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
 gi|254292037|ref|ZP_04962815.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
 gi|297580174|ref|ZP_06942101.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
 gi|124114251|gb|EAY33071.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
 gi|124121501|gb|EAY40244.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
 gi|146314083|gb|ABQ18623.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|148874031|gb|EDL72166.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
 gi|150422062|gb|EDN14031.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
 gi|227015452|gb|ACP11661.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|297535820|gb|EFH74654.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
          Length = 663

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 29/398 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +   +   QA++MA
Sbjct: 48  SPTPIQAAAIPVLLEGRD------ALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMA 101

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN   + V  I G      + +AL+      AHI++GT    +
Sbjct: 102 PTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS----GAHIVVGTPGRVK 157

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M   P   + ++ ++     +
Sbjct: 158 DLITRDRL---HLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMV 214

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            +I E+   R P    +   N+    +E+   V+   +K   +   +E ++         
Sbjct: 215 KEIVERFL-RDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 273

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 274 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 333

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V +++ +   
Sbjct: 334 ITHVYNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQ 392

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +   D  +  E  +  + Q        +  E    L+E
Sbjct: 393 LPHRD--KVAESRLTKLGQELAADKEFSSLERFADLVE 428


>gi|119468751|ref|ZP_01611803.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family [Alteromonadales bacterium TW-7]
 gi|119447807|gb|EAW29073.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family [Alteromonadales bacterium TW-7]
          Length = 433

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/383 (16%), Positives = 130/383 (33%), Gaps = 38/383 (9%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 +   +I Q +      + T  Q +AI  + +          +     G+GKT  
Sbjct: 1   MNFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDV------LASAQTGTGKTAA 54

Query: 310 ALIAMAAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
             + +   +            A+++AP   LA+Q     K+Y ++T + V  + G +  A
Sbjct: 55  FALPVIQKLIESDLSTTNAPTALVLAPTRELAEQIANNCKEYAKHTSLKVVSLFGGVNTA 114

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGV--QQRL 412
            +  AL+        I++ T     D I+   L L  V        D     G     + 
Sbjct: 115 GQENALKA----GVDIVVATPGRLLDHIRLGNLSLANVKHLVLDEADRMLDMGFITDMQT 170

Query: 413 KLTQKATAPHVLLMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            +   A    +LL +AT     +      L   +I ++ +  +    ++ V+ P+    +
Sbjct: 171 VIKSCADDRQILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVQHVVYPVEERRK 230

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
                +++  +  +   +          N +   +              + HG  S  ++
Sbjct: 231 QELLSELIGKKNWQQVLVFV--------NMKDTADELVKELNLDGIPATVCHGDKSQGNR 282

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
              +  FK G  ++L+AT V   GID+     +I  +        +H++ GR GR     
Sbjct: 283 RRALREFKEGKVRVLVATEVAARGIDIDGLPRVINIDLPWLAEDYVHRI-GRTGRAGNQG 341

Query: 591 SCILLYHPPLSKNSYTRLSVLKN 613
             I           +   +++  
Sbjct: 342 QAISFVSREEENTLFEIEALIGQ 364


>gi|28377407|ref|NP_784299.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|254555590|ref|YP_003062007.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|300769652|ref|ZP_07079536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179612|ref|YP_003923740.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270239|emb|CAD63140.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|254044517|gb|ACT61310.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|300492805|gb|EFK27989.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045103|gb|ADN97646.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 528

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/341 (18%), Positives = 126/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  Q   I  +L+          I Q   G+GKT    + +   ++      QA++++P 
Sbjct: 25  TPIQAETIPMVLEGKDV------IGQAQTGTGKTAAFALPILQRLDFDNHNIQALVVSPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E I +  ++ +  V+++ G      + + L++       +I+GT     D I
Sbjct: 79  RELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIRNLKQ----NPQVIVGTPGRLLDHI 134

Query: 391 QY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--LVLT 438
           +           L+L   DE    G  + +   + Q       +L +AT  P    + + 
Sbjct: 135 RRGTVKLDHVKMLVLDEADEMLNMGFLEDIESIIKQVPDERQTMLFSATMPPEIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + +    KI  K      +    +     ++     ++   +  +   +  +       
Sbjct: 195 FMKEPHHVKIKSKEMTADTVDQYYVKAKEFEKFDIMTRLFDVQAPELTIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+  +   E    + A IHG +S   +  +M  FK G   +L+AT V   G+DV 
Sbjct: 249 --KRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILVATDVAARGLDVS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR       +    P 
Sbjct: 307 GVTHVYNYDIPQDPDSYVHRI-GRTGRAGHKGVSLTFVTPN 346


>gi|73965191|ref|XP_861211.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           isoform 3 [Canis familiaris]
          Length = 533

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 156/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 37  LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 89

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 90  SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 143

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 144 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 203

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 204 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 259

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 260 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 309

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   +  +    ++ ++HG M
Sbjct: 310 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDM 369

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 370 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 428

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 429 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 473


>gi|258516257|ref|YP_003192479.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779962|gb|ACV63856.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 539

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/345 (22%), Positives = 128/345 (37%), Gaps = 39/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            PT  Q+  I   L+          I Q   G+GKT    I +   ++    G QA+I+ 
Sbjct: 34  EPTPIQQKTIPISLEGKD------IIGQAQTGTGKTAAFAIPVLEKIDSRRNGVQALIIT 87

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I    +  +I    I G      + KAL++    +  I+IGT     D
Sbjct: 88  PTRELAIQVAEEISNIGKYCRIRALPIYGGQSIDRQIKALKQQ---RVQIVIGTPGRLLD 144

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            ++   L L  V        DE    G  + ++     T             +T + ++ 
Sbjct: 145 HLRRGTLRLEQVATVVLDEADEMLDMGFIEDIEAILNQTP---------TTRQTFLFSAT 195

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
              +I +++ K        T +   N    +IE++     E  K   +   ++       
Sbjct: 196 IPEEILRLSRKYLNSPEFIT-VSRNNLTVPLIEQVYYETRESTKLDALARLLDALDISLA 254

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R V E   SL      +  + HG +S   +  VM  FK G  + L+AT V   
Sbjct: 255 IIFCRTKRGVDELVASLQVRGYQAAGL-HGDLSQYQRNHVMRQFKAGQVEFLVATDVAAR 313

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+ + S +I  +        +H++ GR GR  +    I L  P
Sbjct: 314 GLDIENVSHVINFDVPQDPEFYVHRI-GRTGRAGKTGMAISLVSP 357


>gi|66555009|ref|XP_395774.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Apis
           mellifera]
          Length = 566

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/367 (19%), Positives = 138/367 (37%), Gaps = 41/367 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            PT  Q       L        M+ I     GSGKTL  ++     +        + G  
Sbjct: 129 EPTSIQAQGWPIAL----SGRDMVGI--ASTGSGKTLSYILPAIVHINSQPKLGRKDGPI 182

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +    +  ++ I    + G  P+  + + L     G   I+I T 
Sbjct: 183 ALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARDL----DGGVEIVIATP 238

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       +   +++DE  R          +K      ++    P  +TL+ +
Sbjct: 239 GRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRK------IIEQIRPDRQTLMWS 292

Query: 439 SLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    ++  + E          V    +   + I ++I+  +    E K +  +   + E
Sbjct: 293 ATWPKEVKNLAEDFLKDYAQINVGSLQLAANHNILQIIDVCQDYEKENKLSTLLKEIMAE 352

Query: 495 KKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +          R V E    +      ++ I HG  +  +++ V+  F++G   +L+AT
Sbjct: 353 SENKTIVFIETKRRVDEITRKMKRDGWPAVCI-HGDKTQQERDWVLQDFRSGKAPILVAT 411

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV D   +I  +        +H++ GR GR ++  +    + P  S  +   +
Sbjct: 412 DVAARGLDVEDVKFVINFDYPSCSEDYVHRI-GRTGRRQKTGTAYTFFTPNNSNKANDLI 470

Query: 609 SVLKNTE 615
            VLK   
Sbjct: 471 QVLKEAN 477


>gi|114764595|ref|ZP_01443799.1| ATP-dependent RNA helicase RhlE [Pelagibaca bermudensis HTCC2601]
 gi|114542971|gb|EAU45991.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. HTCC2601]
          Length = 502

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 139/369 (37%), Gaps = 46/369 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+          +     G+GKT    + M  ++  G       +++
Sbjct: 24  TPTPIQAGAIPHALEGKDV------LGIAQTGTGKTASFTLPMITSLARGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y +  ++   ++ G +    + + +++       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQEQLIDK----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KLIL     ++VDE  R      +   ++       + + TP   +TL  ++
Sbjct: 134 LLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIER-------IFSLTPFTRQTLFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL------SEGKKAYWICPQIE 493
               +I +IT       P +  +       E IE+  V         EG +   +  Q+ 
Sbjct: 187 TMAPEIERITNTFL-SNPERIEVARQATASETIEQGAVFFKGSRKDREGSEKRTVLRQLI 245

Query: 494 EKK---------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +++           N +  V+      + +  +   IHG +    +   ++ F+ G+ +L
Sbjct: 246 DREGEKCTNAIVFCNRKVDVDIVAKSLKKYGYNAEPIHGDLDQSQRTRTLEGFREGSIRL 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIA+ V   G+DV   S +   +        +H++ GR GR         +  P   KN 
Sbjct: 306 LIASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRI-GRTGRAGREGKAFTIVVPRDEKNF 364

Query: 605 YTRLSVLKN 613
                +L+ 
Sbjct: 365 EDVEKLLQK 373


>gi|91225696|ref|ZP_01260725.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
 gi|269966740|ref|ZP_06180817.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
 gi|91189585|gb|EAS75860.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
 gi|269828663|gb|EEZ82920.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
          Length = 643

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 145/365 (39%), Gaps = 27/365 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   ++      QA+++A
Sbjct: 28  SPTPIQAAAIPHLLEG------ADALGKAQTGTGKTAAFSLPLLNKLDLNQRKPQAIVLA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   +N   + V  I G      + +AL+      AH+++GT    Q
Sbjct: 82  PTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKS----GAHVVVGTPGRVQ 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDI 445
           D I   +L    +DE   F + +  ++        V  ++  A    + ++ ++     +
Sbjct: 138 DLINRERL---HLDEVSTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPML 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            KI E+   R P+   +   N   + +++   V+   +K   +   +E ++         
Sbjct: 195 KKIVERFL-RDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V K++ +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQ 372

Query: 620 IAEED 624
           +   D
Sbjct: 373 LPLRD 377


>gi|315123425|ref|YP_004065431.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315017185|gb|ADT70522.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 433

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/383 (17%), Positives = 135/383 (35%), Gaps = 38/383 (9%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 +   ++ Q +      + T  Q +AI  + +          +     G+GKT  
Sbjct: 1   MNFKSFSFAPELIQALDELNYHTLTPIQRAAIPAVRKGKDV------LASAQTGTGKTAA 54

Query: 310 ALIAMAAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
             + +   +            A+++AP   LA+Q     K + + T + V  + G +  A
Sbjct: 55  FALPIIQKLFESDSSTTNAPSALVLAPTRELAEQIANNFKDFAKYTSLKVVSLFGGVNTA 114

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQ- 416
            +  AL+        I++ T     D I+   L L  V     DE  R      +   Q 
Sbjct: 115 GQEIALKE----GVDIVVATPGRLLDHIRLGNLSLAQVKHLVLDEADRMLDMGFINDMQS 170

Query: 417 ----KATAPHVLLMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
                A    +LL +AT     +      L   +I ++ +  +    ++ V+ P+    +
Sbjct: 171 VIKSCADERQILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVQHVVYPVEERRK 230

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
                +++  +  +   +   ++E  +       E    L+     + A+ HG  S  ++
Sbjct: 231 QELLSELIGKKNWQQVLVFVNMKETAD-------ELVTELNLDGIPA-AVCHGDKSQGNR 282

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
              +  FK G  ++L+AT V   GID+     +I  +        +H++ GR GR     
Sbjct: 283 RRALREFKEGKVRVLVATEVAARGIDIDGLPRVINIDLPWLAEDYVHRI-GRTGRAGNQG 341

Query: 591 SCILLYHPPLSKNSYTRLSVLKN 613
             I           +   +++  
Sbjct: 342 QAISFVSREEENMLFEIETLIGQ 364


>gi|195054323|ref|XP_001994075.1| GH22875 [Drosophila grimshawi]
 gi|193895945|gb|EDV94811.1| GH22875 [Drosophila grimshawi]
          Length = 799

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/380 (17%), Positives = 134/380 (35%), Gaps = 50/380 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---------EAGG 322
            PT  Q+ AI  I+           +     GSGKT   L+ +   +         +   
Sbjct: 315 KPTPVQKYAIPIIISGRD------LMACAQTGSGKTAAFLVPILNQMYEHGLSAPPQNNR 368

Query: 323 Q---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           Q          +++AP   LA Q +E  KK+   +++   ++ G    + + + L+R   
Sbjct: 369 QYSRRKQFPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDR--- 425

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+I+ T    +D I   K+ L  +     DE  R          Q       L M  
Sbjct: 426 -GCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEP--QIRRIVEQLNMPP 482

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++     I ++         I   +  +    E I +  + + +  K  ++
Sbjct: 483 TGQRQTLMFSATFPKQIQELASDFL-SNYIFLAVGRVGSTSENITQTLLWVYDQDKRSYL 541

Query: 489 CPQIEEKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              +   ++                +   +            +  IHG  +  ++E  + 
Sbjct: 542 LDLLSSIRDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALR 601

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G C +L+AT V   G+D+   + +I  +        +H++ GR GR   +      
Sbjct: 602 CFRSGDCPILVATAVAARGLDIPHVTHVINFDLPTDVEEYVHRI-GRTGRMGNLGVATSF 660

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           ++          L +L  T+
Sbjct: 661 FNDKNRNICSDLLELLIETK 680


>gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281207|gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 513

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 149/386 (38%), Gaps = 47/386 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q  AI  +LQ +        +     G+GKT    + +   + A            
Sbjct: 59  PTPIQAEAIPVVLQGIDV------MGAAQTGTGKTAGFSLPIIQLLMAHANSSASPARHP 112

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q  + +K Y+++T +   ++ G +  A +  AL         I+I 
Sbjct: 113 VRALILTPTRELADQVADNVKAYSRHTPLRSVVVFGGVDMAPQTAALRS----GVEIVIA 168

Query: 382 THALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPI 431
           T     D IQ   L L       +DE  R      L   Q+           L+ +AT  
Sbjct: 169 TPGRLLDHIQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQRQNLMFSATFS 228

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P    L  T L D    ++    A  + +  ++  +   D+      ++   G K   + 
Sbjct: 229 PEIKKLAATFLKDPVTIEVARSNATAENVTQIVYKVEEGDKGDAVSYIIRERGLKQVIVF 288

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   SN +    R     E+     + IHG  S  ++ + +++FKNGT ++L+AT 
Sbjct: 289 --------SNTKIGASRLARQLENEGVKASAIHGDKSQAERMAALEAFKNGTIEVLVATD 340

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +   +I  +  +     +H++ GR GR       I LY    ++       
Sbjct: 341 VAARGLDIAELPCVINYDLPYNAEDYVHRI-GRTGRAGASGDAISLYSDKDARLLVDIEK 399

Query: 610 VLKN-----TEDGFLIAEEDLKQRKE 630
           ++K+        GF+ A     +RKE
Sbjct: 400 MIKHKFVPAQLAGFVPAGNRASERKE 425


>gi|15227951|ref|NP_181780.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|108861890|sp|Q84W89|RH37_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 37
 gi|4559339|gb|AAD23001.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|330255039|gb|AEC10133.1| DEAD-box ATP-dependent RNA helicase 37 [Arabidopsis thaliana]
          Length = 633

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 128/376 (34%), Gaps = 47/376 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
            PT  Q  AI  +L+          +     GSGKT      + + +             
Sbjct: 181 KPTPVQRHAIPILLEGRD------LMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSR 234

Query: 322 ---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                AVI++P   LA Q ++  KK++  T + V +  G  P   + + LER       I
Sbjct: 235 TVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELER----GVDI 290

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRL------KLTQKATAPHVL 424
           ++ T     D ++  +        L L   D     G + ++                 L
Sbjct: 291 LVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTL 350

Query: 425 LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKT---VIIPINRIDEVIERLKVVL 479
           L +AT     + L    L +     +    +    I      ++  ++   +++ L    
Sbjct: 351 LFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQR 410

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G +       +        +   +   +           IHG  +  ++E  + +FK+
Sbjct: 411 ENGIQGKQALTLV----FVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKS 466

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+   + ++  +  +     +H++ GR GR  +       ++  
Sbjct: 467 GRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI-GRTGRAGKSGLATAFFNDG 525

Query: 600 LSKNSYTRLSVLKNTE 615
            +  +     +++   
Sbjct: 526 NTSLARPLAELMQEAN 541


>gi|194752113|ref|XP_001958367.1| GF10884 [Drosophila ananassae]
 gi|190625649|gb|EDV41173.1| GF10884 [Drosophila ananassae]
          Length = 822

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/364 (20%), Positives = 129/364 (35%), Gaps = 35/364 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       +           +     GSGKTL  ++     +          G  
Sbjct: 173 KPTAIQAQGWPIAMSGRD------LVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPI 226

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  NT +    I G  P+  + + LER       I+I T 
Sbjct: 227 ALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLER----GVEIVIATP 282

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 283 GRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKE 342

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L    L +     I             I+ +   +E + +L  +L++         +
Sbjct: 343 VRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLVKLLTDISAE----NE 398

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +       +  V+               IHG  S  +++ V+ SF+NG   +L+AT V 
Sbjct: 399 TKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVA 458

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D   +I  +        +H++ GR GR     +   L+    +  +   + VL
Sbjct: 459 ARGLDVDDVKFVINYDYPSNSEDYVHRI-GRTGRSNNRGTAYTLFTHSNANKANDLIQVL 517

Query: 612 KNTE 615
           +   
Sbjct: 518 REAN 521


>gi|32267267|ref|NP_861299.1| ATP-dependent RNA helicase DeaD [Helicobacter hepaticus ATCC 51449]
 gi|32263320|gb|AAP78365.1| ATP-dependent RNA helicase DeaD [Helicobacter hepaticus ATCC 51449]
          Length = 530

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/340 (20%), Positives = 126/340 (37%), Gaps = 31/340 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
           +P+  Q  +I  ILQ          I Q   G+GKT    I +   +      +A+I+ P
Sbjct: 67  TPSPVQSQSIPIILQGKD------LIAQAQTGTGKTAAFAIPILNTLNRNKDIEALIITP 120

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I K  +  +I    + G      +   LE+    +   +I T     D 
Sbjct: 121 TRELAMQISEEILKLGRFGRIKTICMYGGQSIKRQCDLLEK----KPKAMIATPGRLLDH 176

Query: 390 IQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +Q  ++         +DE         L   ++       +    P  R  +L S    +
Sbjct: 177 LQNGRIAHFSPQIVVLDESDEMLDMGFLDDIEE-------IFKFLPNTRQTLLFSATMPE 229

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----- 499
             K        +P    I P +  ++ IE+   +++EG++   I   IE +  +      
Sbjct: 230 PIKALAMKILNEPAFVKITPTDVTNQDIEQQYYIINEGERDEAIVRLIETQNPTKSIIFT 289

Query: 500 -FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +   +       +       +HG M   D+   + +F+    ++L+AT V   G+D+ 
Sbjct: 290 RMKKEADALAIRLANRGFKAIALHGDMEQRDRREAIKAFRENKIEILVATDVASRGLDIS 349

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           D S +   +      + +H++ GR GR  +    + L  P
Sbjct: 350 DVSHVFNYHIPLNPESYVHRI-GRTGRAGKKGVAVTLATP 388


>gi|269962576|ref|ZP_06176923.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
 gi|269832689|gb|EEZ86801.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
          Length = 644

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 145/365 (39%), Gaps = 27/365 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   ++      QA+++A
Sbjct: 28  SPTPIQAAAIPHLLEG------ADALGKAQTGTGKTAAFSLPLLNKLDLDQRKPQAIVLA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   +N   + V  I G      + +AL       AH+++GT    Q
Sbjct: 82  PTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL----KNGAHVVVGTPGRVQ 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDI 445
           D I   +L    +DE + F + +  ++        V  ++  A    + ++ ++     +
Sbjct: 138 DLINRERL---HLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPML 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
             I E+   R+P+   +   N   + +++   V+   +K   +   +E ++         
Sbjct: 195 KNIVERFL-REPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V K++ +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQ 372

Query: 620 IAEED 624
           +   D
Sbjct: 373 LPLRD 377


>gi|262403840|ref|ZP_06080398.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
 gi|262350344|gb|EEY99479.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
          Length = 643

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 29/398 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +   +   QA++MA
Sbjct: 28  SPTPIQAAAIPVLLEGRD------ALGKAQTGTGKTAAFSLPLLNKLNLSQHKPQAIVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN   + V  I G      + +AL+      AHI++GT    +
Sbjct: 82  PTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS----GAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M   P   + ++ ++     +
Sbjct: 138 DLITRDRL---HLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMV 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            +I E+   R P    +   N+    +E+   V+   +K   +   +E ++         
Sbjct: 195 KEIVERFL-RNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V +++ +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQ 372

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +   D  +  E  +  + Q        +  E    L+E
Sbjct: 373 LPHRD--KVAESRLTKLGQELAADKEFSSLERFAELVE 408


>gi|163789886|ref|ZP_02184322.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
 gi|159874826|gb|EDP68894.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
          Length = 527

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 131/351 (37%), Gaps = 39/351 (11%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
             + F   T  Q   I   L+          I Q   G+GKT    + M   ++      
Sbjct: 17  ERLGFEEATPIQGQTIPLALEGKDV------IGQAQTGTGKTAAFGLPMLQKIDVNNRNV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E + + +++ ++ V+++ G    + + +AL+       HI++GT
Sbjct: 71  QGLVIAPTRELAIQTQEELFRLSRDKKVRVQVVYGGADISRQIRALKDA----PHIVVGT 126

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I+   L L  V        DE    G    ++                   +T
Sbjct: 127 PGRLLDHIKRKTLKLGHVETLVLDEADEMLNMGFIDDIETIIHEVPAE---------RQT 177

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I +I  +   ++P    I      D +IE+  V   + +K   +    + 
Sbjct: 178 LLFSATMPPAIKRIGVRFM-KEPEHVQIKATTMSDSLIEQFFVRCKDFEKFDIMTRLFDV 236

Query: 495 KKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +           +  V+      E        IHG +S   + SV+ +FK G   +L+AT
Sbjct: 237 QTPELTIIFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKAFKTGKLDVLVAT 296

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            V   G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGVSVTFITPN 346


>gi|114775697|ref|ZP_01451265.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
           PV-1]
 gi|114553808|gb|EAU56189.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
           PV-1]
          Length = 628

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/353 (19%), Positives = 135/353 (38%), Gaps = 35/353 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  Q + I  +L+          + Q   G+GKT    + + + ++      Q +++AP 
Sbjct: 29  TPIQAATIPLLLEGRDV------LGQAQTGTGKTAAFALPLLSMIDIDQRDPQVLVLAPT 82

Query: 331 GILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  E  ++Y  +     V  I G      + + L+R     AH+++GT     D 
Sbjct: 83  RELAIQVAEAFQQYAHHIKGFHVLPIYGGQSYDIQLRQLKR----GAHVVVGTPGRVMDH 138

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPI--PRTLVL 437
           I+   L        +L   DE  R G    +K    Q      + L +AT     R +  
Sbjct: 139 IRRKTLNLSGLKTLVLDEADEMLRMGFIDDVKWVLEQLPEQRQIALFSATMPAVIRKIAQ 198

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           + L +     I +K      I+     ++  +++    +++  E      I  +      
Sbjct: 199 SHLKNPQHVTIKDKTTTAPTIRQRFWMVSGRNKIDALTRILEFEPFDGMIIFVRT----- 253

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              ++  +      E    + + ++G +    +E +++  K+G   +++AT V   G+DV
Sbjct: 254 ---KTATDEVAERLEARGYAASALNGDVKQSQREQIVNRLKSGKIDIVVATDVAARGLDV 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              S +I  +  H   + +H++ GR GR       IL   P   +  Y+    
Sbjct: 311 ERISHVINYDIPHDTESYVHRI-GRTGRAGRKGDAILFVAPREKRMLYSIEKA 362


>gi|304403848|ref|ZP_07385510.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304346826|gb|EFM12658.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 546

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 77/366 (21%), Positives = 138/366 (37%), Gaps = 39/366 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           +  + F   T  Q  +I   L           I Q   G+GKT    I +   +   E  
Sbjct: 17  ITELGFEEATPIQSKSIPIALTG------SDLIGQAQTGTGKTAAFGIPLINKIPVTEDR 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+IM P   LA Q  E I K T+   +    I G      + +AL++       IIIG
Sbjct: 71  IVALIMTPTRELAIQVAEEIGKLTRYKGLRSLPIYGGQEIGRQIRALKK----HPQIIIG 126

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I    + L  V        DE    G  + +            L       +
Sbjct: 127 TPGRLLDHINRKTIKLADVQTVILDEADEMLDMGFMEDITSI---------LSMVPAERQ 177

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    +I ++ +      P    +IP      +I++  + + E +K   +   I+
Sbjct: 178 TMLFSATMPPNIQRLAQTFLN-NPEHVSVIPKQVSAPLIDQAYIEVHERQKFEALSRLID 236

Query: 494 EKK---ESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +       F     R + L E       S   +HG +S   +++VM  F++G+  +L+A
Sbjct: 237 MESPELAIIFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVA 296

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV   + +I  +      + +H++ GR GR  +  +      P  + + +  
Sbjct: 297 TDVAARGLDVSGVTHVINFDLPQDPESYVHRI-GRTGRAGKEGTAWSFVTPRETDHLHFI 355

Query: 608 LSVLKN 613
             V ++
Sbjct: 356 EKVTRH 361


>gi|149189555|ref|ZP_01867838.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
 gi|148836534|gb|EDL53488.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
          Length = 634

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 144/365 (39%), Gaps = 27/365 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L           + +   G+GKT    + +   +   +   QAV++A
Sbjct: 28  SPTPIQAAAIPHLLAGKD------ALGKAQTGTGKTAAFSLPLLNKLNLDQRKPQAVVLA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   QN   + V  I G      + +AL       AHI++GT    Q
Sbjct: 82  PTRELAIQVAAEMKNLGQNINGLKVLEIYGGASIVDQMRAL----KNGAHIVVGTPGRVQ 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDI 445
           D I   +L    +DE H F + +  ++        V  ++  A    + ++ ++     +
Sbjct: 138 DLINRDRL---HLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPETAQRVLFSATMPPML 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            KI ++   R+P    +   N   + +E+   V+   +K   +   +E ++         
Sbjct: 195 KKIVDRFL-REPEYVDVAGKNHTVDKVEQQFWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V K++ +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQ 372

Query: 620 IAEED 624
           +   D
Sbjct: 373 LPLRD 377


>gi|219847371|ref|YP_002461804.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219541630|gb|ACL23368.1| DEAD/DEAH box helicase domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 550

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 76/348 (21%), Positives = 132/348 (37%), Gaps = 34/348 (9%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           LR + +  PT  Q  AI  +L           I Q   G+GKT    + M   V      
Sbjct: 17  LRELGYDEPTPIQAQAIPLLLAGRDV------IAQAQTGTGKTAAFALPMIEQVTDEPVV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+++AP   LA Q  E + +Y ++  + V  I G  P   + + L +       +++GT
Sbjct: 71  QALVLAPTRELAVQVAEAVHRYGRHRALRVLPIYGGQPIERQLRGLAQ----GVQVVVGT 126

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT--P 430
                D ++   L        +L   DE    G  + L   L          L +AT  P
Sbjct: 127 PGRVLDHLRRGTLRFDHLRLVVLDEADEMLDMGFAEELEAILQLTPAERQTALFSATLPP 186

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             ++L L          I  +      I+ +   I   D++    +V+ +E  +   +  
Sbjct: 187 AVQSLTLRYTRQPVRVSIAAEQLTTPHIRQIYYEILARDKLDALCRVLDAEMPQLAIVFC 246

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         R  V+      +    +   +HG +S   ++ VM  F+ G   +L+AT V
Sbjct: 247 RT--------RQEVDEIGERLQGRGYAAESLHGDLSQAVRDRVMRRFREGQLDVLVATDV 298

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+ + S +I  +      + +H++ GR GR       I    P
Sbjct: 299 AARGLDIAEVSHVINYDVPTDPESYVHRI-GRTGRAGRAGVAITFITP 345


>gi|153938870|ref|YP_001392080.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str.
           Langeland]
 gi|152934766|gb|ABS40264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. Langeland]
 gi|295320089|gb|ADG00467.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. 230613]
          Length = 524

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 74/367 (20%), Positives = 149/367 (40%), Gaps = 38/367 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----E 319
           ++++ F  P+  QE +I  +L+          I Q   G+GKTL     + +A+     +
Sbjct: 19  IQHMGFETPSAIQEKSIPVVLEG------ADVIAQAQTGTGKTLAFGAPVISALCDKEKK 72

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G +A+++ P   LA Q  + +K+ ++ ++  V  + G      + K ++        I+
Sbjct: 73  KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS----GVDIV 128

Query: 380 IGTHALFQDSIQYYKLILVIVD--------EQHRFGVQQRLKLTQKAT--APHVLLMTAT 429
           +GT     D I    L L  +D        E    G  + ++   ++T      +L +AT
Sbjct: 129 VGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTMLFSAT 188

Query: 430 ---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
              PI +  +     D++   I +K      I      +   D++    +++ SE  ++ 
Sbjct: 189 MPAPIKKLALNYMKKDVEHIAIVKKSLTVDKIAQHYFAVKNKDKLEAICRIIDSEEPESA 248

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            I  +         +  V+      +    ++  +HG MS   + + +  FK  T   L+
Sbjct: 249 IIFCRT--------KRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   GIDV + S +I  +      + +H++ GR GR ++  +   L  P    +   
Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRI-GRTGRADKEGTAYSLVTPREVSSIRQ 359

Query: 607 RLSVLKN 613
              + K+
Sbjct: 360 IERITKS 366


>gi|269967184|ref|ZP_06181249.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|269828174|gb|EEZ82443.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 522

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 141/373 (37%), Gaps = 41/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  IL+          +     G+GKT    + +   +  G +       A
Sbjct: 23  TPSPIQAKAIPAILEGKDV------MAAAQTGTGKTAGFTLPILERLSNGPRVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +  Y+++  +   ++ G +    + + L +     A +++ T  
Sbjct: 77  LILTPTRELAAQVQENVFMYSRHLPLNSAVVFGGVKINPQMQRLRK----GADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRK-------ILALLPKQRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +E+        KKA  +   I++     
Sbjct: 186 ATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R            A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++           +H++ GR GR  E+   I L     +   +    +++ 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRI-GRTGRAGEVGKAISLVCALEASELFAIERLIQE 364

Query: 614 TEDGFLIAEEDLK 626
                ++  ++L+
Sbjct: 365 -----VLPRKELE 372


>gi|261212543|ref|ZP_05926828.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
 gi|260838474|gb|EEX65130.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
          Length = 639

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 29/398 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +   +   QA++MA
Sbjct: 28  SPTPIQAAAIPVLLEGRD------ALGKAQTGTGKTAAFSLPLLNKLNLSQHKPQAIVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN   + V  I G      + +AL+      AHI++GT    +
Sbjct: 82  PTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS----GAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M   P   + ++ ++     +
Sbjct: 138 DLITRDRL---HLDECHTFILDEADEMLKMGFVDDVTWIMEQAPETAQRVLFSATMPPMV 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            +I E+   R P    +   N+    +E+   V+   +K   +   +E ++         
Sbjct: 195 KEIVERFL-RNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V +++ +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQ 372

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +   D  +  E  +  + Q        +  E    L+E
Sbjct: 373 LPHRD--KVAESRLTKLGQELAADKEFSSLERFAELVE 408


>gi|254580545|ref|XP_002496258.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
 gi|238939149|emb|CAR27325.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
          Length = 494

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 149/400 (37%), Gaps = 42/400 (10%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF-S 272
             ++ + +   ++    +E    Q   L   + F     +P         +  +N+ F  
Sbjct: 44  SGEEKDESKKHKKAKVQEEEPEYQGEDL---QSFNDLNLVP------ELIEACKNLNFDK 94

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMAP 329
           PT  Q  AI   L+          I     GSGKT    I +   +    Q   A ++AP
Sbjct: 95  PTPIQARAIPPALEGRD------IIGLAQTGSGKTAAFAIPILNRLWEDKQPYYACVLAP 148

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ  E          +    I G M    + + L R    + HIII T     D 
Sbjct: 149 TRELAQQTKETFDSLGALMGVRSTCIVGGMNMMDQARELMR----KPHIIIATPGRLMDH 204

Query: 390 IQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
           ++        KL  +++DE  R      L +        +L +  T    T + ++    
Sbjct: 205 LENTKGFSLRKLRFLVMDEADRL-----LDMEFGPVLDKILKVIPTQDRTTYLFSATMTS 259

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------E 497
            I K+ ++ +  +P+K  +    +  + + +  +V+  G K  ++   + E         
Sbjct: 260 KIDKL-QRASLTEPVKCAVSNKYQTVDTLVQTLMVVPSGLKNTYLIYLLNENIGKTVIIF 318

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  ++  ER ++L      +   +HG ++   +   +D FK G   +L+AT V   G+D+
Sbjct: 319 TRTKANAERLSALCNLLEFNATALHGDLNQNQRTGALDLFKAGRRSILVATDVAARGLDI 378

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
               I+I  +      + +H++ GR  R       I L  
Sbjct: 379 PSVDIVINYDIPVDSKSYIHRV-GRTARAGRSGKSISLVS 417


>gi|317485703|ref|ZP_07944574.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
 gi|316923068|gb|EFV44283.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
          Length = 594

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 138/365 (37%), Gaps = 38/365 (10%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--Q 323
            ++ F  P+  Q  AI  +L           + Q   G+GKT    + +   + +G   Q
Sbjct: 19  EDLGFEEPSPIQVLAIPALLTGKD------AVGQAQTGTGKTAAFGLPILEKIASGKSVQ 72

Query: 324 AVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           A+++ P   LA Q  E + K       + V  I G  P   + +AL +     A +++GT
Sbjct: 73  ALVLCPTRELAIQVSEELSKLAVHKRGVSVLPIYGGQPIERQLRALAK----GAQVVVGT 128

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP 432
                D +Q   L        +L   DE    G ++ ++L   Q       +L +AT   
Sbjct: 129 PGRVIDHLQRGTLRLNEARIVVLDEADEMLDMGFREDIELILEQSPADCQRVLFSATMPQ 188

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             R L    L + ++  I  K      I+ V   +    ++    +V+ S+G +   +  
Sbjct: 189 PIRELSKRFLREPEMLTIAHKMLTVPAIEQVYYEVRPYQKMDALCRVLDSQGFRKALVF- 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +  V+      +        +HG M+   ++ VM  F+    ++L+AT V
Sbjct: 248 -------CATKRSVDEITVHLQQRGYQADGLHGDMNQTQRDRVMSRFRTDGIEILVATDV 300

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GIDV D   +I  +  H     +H++ GR GR                +  Y    +
Sbjct: 301 AARGIDVDDVDAVINYDIPHDVEGYVHRI-GRTGRAGREGKAFTFVT---VREQYKIREI 356

Query: 611 LKNTE 615
           ++ T+
Sbjct: 357 IRYTK 361


>gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
           15579]
 gi|187772242|gb|EDU36044.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
           15579]
 gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
          Length = 524

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/361 (19%), Positives = 143/361 (39%), Gaps = 26/361 (7%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----E 319
           ++++ F  P+  QE +I  +L+          I Q   G+GKTL     + + +     +
Sbjct: 19  IQHMGFETPSAIQEKSIPVVLEG------ADVIAQAQTGTGKTLAFGAPVISTLCDEGKK 72

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G +A+++ P   LA Q  + +K+ ++ ++  V  + G      + K ++        I+
Sbjct: 73  KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS----GVDIV 128

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLT 438
           +GT     D I    L L  +D       +    L          +M +TP   +T++ +
Sbjct: 129 VGTPGRVLDHINRRTLKLGGID--FLVLDEADEMLNMGFIEDIETIMASTPEEKQTMLFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +     I K+      +      I+  +   + I +    +    K   IC  I+ ++  
Sbjct: 187 ATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRIIDSEEPE 246

Query: 498 -----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  V+      +    ++  +HG MS   + + +  FK  T   L+AT V  
Sbjct: 247 SAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GIDV + S +I  +      + +H++ GR GR ++  +   L  P    +      ++K
Sbjct: 307 RGIDVENISHVINYDIPQDAESYVHRI-GRTGRADKEGTAYSLVTPREVSSIRQIERIIK 365

Query: 613 N 613
           +
Sbjct: 366 S 366


>gi|262164855|ref|ZP_06032593.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
 gi|262027235|gb|EEY45902.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
          Length = 643

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 29/398 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +   +   QA++MA
Sbjct: 28  SPTPIQAAAIPVLLEGRD------ALGKAQTGTGKTAAFSLPLLNKLNLSQHKPQAIVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN   + V  I G      + +AL+      AHI++GT    +
Sbjct: 82  PTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS----GAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M   P   + ++ ++     +
Sbjct: 138 DLITRDRL---HLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMV 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            +I E+   R P    +   N+    +E+   V+   +K   +   +E ++         
Sbjct: 195 KEIVERFL-RNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V +++ +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQ 372

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +   D  +  E  +  + Q        +  E    L+E
Sbjct: 373 LPHRD--KVAESRLTKLGQELAADKEFSSLERFAELVE 408


>gi|126736040|ref|ZP_01751784.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
 gi|126714597|gb|EBA11464.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
          Length = 484

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/371 (18%), Positives = 131/371 (35%), Gaps = 48/371 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+          +     G+GKT    + M   +  G       +++
Sbjct: 24  TPTPIQAGAIAPALEGRDV------LGIAQTGTGKTAAFTLPMITLLGRGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E    Y + T++   ++ G      + K +++       ++I T   
Sbjct: 78  VLAPTRELAAQVAENFDAYAKYTKLSRALLIGGTSFKDQDKIIDK----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTL 435
             D ++  KLIL  V        D     G          +       L  +AT  P   
Sbjct: 134 LLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIFKRTPFTRQTLFFSATMAPEIE 193

Query: 436 VLTSLGDIDISKI--TEKPAGRKPIKTVII----------PINRIDEVIERLKVVLSEGK 483
            +T+    + +KI           IK  ++          P  + + + + +        
Sbjct: 194 RITNTFLSNPAKIEVARAATTNTNIKQGVVMFKGSAKPKEPSEKRELLRKLIDAEGEACT 253

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            A   C +         +S V+        +    A IHG +    +   +D F++   +
Sbjct: 254 NAIIFCNR---------KSDVDIVAKSLNKYGYQAAPIHGDLDQSHRTKTLDKFRDNELR 304

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+A+ V   G+D+   + +   +        +H++ GR GR     + I++  P   KN
Sbjct: 305 ILVASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRI-GRTGRAGRSGTAIMICVPRDEKN 363

Query: 604 SYTRLSVLKNT 614
                 ++K T
Sbjct: 364 LEDVERLVKET 374


>gi|257437800|ref|ZP_05613555.1| ATP-dependent RNA helicase DeaD [Faecalibacterium prausnitzii
           A2-165]
 gi|257199723|gb|EEU98007.1| ATP-dependent RNA helicase DeaD [Faecalibacterium prausnitzii
           A2-165]
          Length = 395

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 145/374 (38%), Gaps = 36/374 (9%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   K +  + F+  T+ QE  I  +L           I +   G+GKT    I +A  
Sbjct: 9   SEAIHKAVERMGFAEMTEIQEKTIPVMLAGRDV------IAKAPTGTGKTCAFGIPVAEH 62

Query: 318 VEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAH 373
           ++      QAVIMAP   LAQQ  E + + T     + V  + G      + + L     
Sbjct: 63  IDPEKKYPQAVIMAPTRELAQQIAEELTELTYFMPEVQVACVYGGANMEKQARRLAE--- 119

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFG-VQQRLKLTQKATAPHVL 424
               I++ T     D  +++ + L  V        DE    G  +    + +   A   L
Sbjct: 120 -GCQIVVATPGRLMDHYKHHSIDLAHVTQVVLDEADEMLNMGFYKDVRHIIELMKARKSL 178

Query: 425 LMTATPIPRTLV---LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            M +  I R ++        + +   +  +   +  I   ++  +  +++ +  ++++ E
Sbjct: 179 SMFSATISREVMDIGWLYQNNAEEITVQPREESQPKITQYMLETSGRNKLSDLAQIIIGE 238

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           G K   +          + +       +       S+  +HG +S  ++  +M +F++G 
Sbjct: 239 GYKRVMVF--------CDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQNFRDGR 290

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   GIDV D   +I  +         H++ GR GR ++     L Y P   
Sbjct: 291 LAILVATDVAARGIDVSDVDAVINYDVPGDNEHYTHRI-GRTGRAKKEGVSYLFYVPEEK 349

Query: 602 KNSYTRLSVLKNTE 615
           K     L + +NT+
Sbjct: 350 KRVQELLRLTRNTD 363


>gi|300362413|ref|ZP_07058589.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03]
 gi|300353404|gb|EFJ69276.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03]
          Length = 485

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 134/348 (38%), Gaps = 39/348 (11%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE  I  +L+          I Q   G+GKT    + +   ++      QA+
Sbjct: 20  GFEEATPIQEKTIPLVLEGKDV------IGQAQTGTGKTAAFGLPILQNLDKQHDSIQAI 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E + +  ++ +  V+++ G      + +AL++       I++GT   
Sbjct: 74  VIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQ----TPAILVGTPGR 129

Query: 386 FQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D ++           ++L   DE    G  Q +           +L  A+   +TL+ 
Sbjct: 130 LLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDI---------ESILNYASSKHQTLLF 180

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I +I EK     P    I        +I++  V   E +K   +C  I+ +  
Sbjct: 181 SATMPKPILRIGEKFM-HDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLIDVQNP 239

Query: 497 --ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L     +     A IHG +S   + SV+  F+ G   +L+AT V 
Sbjct: 240 DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVA 299

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+   S +   +      + +H++ GR GR  +    +    P 
Sbjct: 300 ARGLDISGVSHVYNYDIPQDPDSYVHRI-GRTGRAGQNGMSVTFVTPN 346


>gi|167817317|ref|ZP_02448997.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei 91]
          Length = 269

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 103/244 (42%), Gaps = 18/244 (7%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   S 
Sbjct: 35  KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-SE 87

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 88  IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 146

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 147 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 205

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 206 LDVPPLADAVRMLHHPGVGADEAALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 265

Query: 253 IPIN 256
             + 
Sbjct: 266 PAMP 269


>gi|183598940|ref|ZP_02960433.1| hypothetical protein PROSTU_02380 [Providencia stuartii ATCC 25827]
 gi|188021152|gb|EDU59192.1| hypothetical protein PROSTU_02380 [Providencia stuartii ATCC 25827]
          Length = 457

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 91/458 (19%), Positives = 176/458 (38%), Gaps = 58/458 (12%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + + T  QE+A+  IL     +       Q   GSGKT    + +   ++A    
Sbjct: 18  LTELGYVTMTPIQEAALPAILAGKDVR------AQAKTGSGKTAAFGLGLLQHIDAKQFS 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +    I +  + G +P + +R +L       AHII+
Sbjct: 72  TQSLVLCPTRELADQVASELRRLARYMANIKILTLCGGVPFSVQRDSLIHA----AHIIV 127

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATP 430
            T     D +            L+L   D     G    +   ++    +   LL +AT 
Sbjct: 128 ATPGRLLDHLNKETVKLDTLQTLVLDEADRMLDMGFADDIDEVISYAPISRQTLLFSATW 187

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
                 ++     +   I        P            E I+ L+ +LS+ + A  +  
Sbjct: 188 PETITAMSQRIQRNAITIEINSVDELPAIEQRFYEVARHEKIDLLQKLLSQQQPASCVV- 246

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  +  +     +++L+E    S+ ++HG M   +++  +  F NG+ ++L+AT V
Sbjct: 247 -----FCNTKKDCQAVYDALNEC-HQSVLVLHGDMEQRERDQTLVRFANGSSRVLVATDV 300

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+    ++I           +H++ GR  R  E    I L  P  ++ +     +
Sbjct: 301 AARGLDIKSLDMVINYELSWDPEVHVHRI-GRTARAGESGLAISLCAPEEAQRANVLEEM 359

Query: 611 L------KNTEDGFLI-----AEEDL--------KQRKEGEILGIKQS--GMPKFLIAQP 649
           L      K+   G  I     +   L        K R  G+ILG      G+    I + 
Sbjct: 360 LNIKLNWKSVPTGLTITPLEASMVTLCIDGGKKAKMR-PGDILGALTGDIGLAGDDIGKI 418

Query: 650 ELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            +H   + + I +  A+H   Q      ++G+S+++ L
Sbjct: 419 TIHPMHAYVAIKQSAARHAWKQL-QQGKIKGKSVKVRL 455


>gi|28900700|ref|NP_800355.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28809080|dbj|BAC62188.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
           parahaemolyticus RIMD 2210633]
          Length = 421

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 148/372 (39%), Gaps = 41/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-----AVI 326
           +PT  QE +I  +L+          +     G+GKT    + +  AV+   +     A+I
Sbjct: 29  TPTPVQEKSIPHVLEGKD------LLAAAQTGTGKTAAFGLPIIQAVQQKKRNGTPHALI 82

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ ++ + +Y ++T + +  + G      ++  LE      A I+I T    
Sbjct: 83  LVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLEE----GADILIATPGRL 138

Query: 387 QDSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLV 436
            D +        +   L+L   D     G    L+  L +      ++L +AT   R   
Sbjct: 139 LDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQIMLFSATFEKRIKT 198

Query: 437 LTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +         ++   PA      +K ++ P+++  +      ++ S   +   +  + ++
Sbjct: 199 IAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQVLVFTKTKQ 258

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             +       E    L      +++I +G  S   ++  +D FK G  + LIAT V   G
Sbjct: 259 GSD-------ELAKELKLDGIKAVSI-NGDKSQGARQRALDEFKQGKVRALIATDVAARG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+ +   ++  +        +H++ GR GR  +    + L    +S++    L  ++  
Sbjct: 311 LDIQELEQVVNFDMPFKAEDYVHRI-GRTGRAGKSGLAVSL----MSRDEEYLLRAIETL 365

Query: 615 EDGFLIAEEDLK 626
            D   + +E L+
Sbjct: 366 LDQ-RLPQEWLE 376


>gi|313234298|emb|CBY10365.1| unnamed protein product [Oikopleura dioica]
          Length = 408

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 86/395 (21%), Positives = 147/395 (37%), Gaps = 48/395 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
            PT  Q  AI   +Q+         I   + GSGKTL  L+ +   +++           
Sbjct: 24  DPTPIQRQAIPIGMQNRD------IIGVAETGSGKTLAFLVPLLVWIDSLPRNIRVEDAD 77

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G  A+I+AP   LA Q  E + K+     I    + G   +  +   L         I+
Sbjct: 78  KGPYAMILAPTRELATQIEEEVVKFGSPLGIRSVAVIGGASREEQGLKLRMGCE----IV 133

Query: 380 IGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           I T     D I+   L+L       +DE  R          QK       +++  P  +T
Sbjct: 134 IATPGRLIDVIENRYLVLSQCTYIVLDEADRMIDMGFEPEVQK-------ILSHMPFRQT 186

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ T+     + +I  K   R+P    I  + +  + I +    + +G+KA  +   +E+
Sbjct: 187 VMFTATMPPPVERIA-KTFMRRPCTVYIGSVGKAADRIVQKAFFVPDGQKAKKMISILED 245

Query: 495 KKE---------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +            N +   +      E +      +HG      ++  +   KNG   +L
Sbjct: 246 ENCLEQGPVIVFVNQKKGCDVLARQLEKYGYDAISLHGGKGQDQRDYALACIKNGEKNVL 305

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   GID+ D S+I+  +         H++ GR GR  +    +       S N Y
Sbjct: 306 VATDVAGRGIDIKDVSLILNYDMAKNIEDYTHRI-GRTGRAGKSGKAVTFLTQDDSHNFY 364

Query: 606 TRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIK 637
               +L  +E      E D     Q+K G I+  K
Sbjct: 365 DLRQMLIESECSSCPPELDRHPEAQQKPGTIMQKK 399


>gi|116054184|ref|YP_788628.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254243551|ref|ZP_04936873.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192]
 gi|296386953|ref|ZP_06876452.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAb1]
 gi|313111919|ref|ZP_07797709.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016]
 gi|115589405|gb|ABJ15420.1| RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126196929|gb|EAZ60992.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192]
 gi|310884211|gb|EFQ42805.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016]
          Length = 458

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 83/454 (18%), Positives = 175/454 (38%), Gaps = 49/454 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ +   T  Q  ++  ILQ          I Q   GSGKT    +A+ + +     G
Sbjct: 19  LDSLGYREMTPIQAQSLPLILQGHD------LIAQAKTGSGKTAAFGLALLSPLNPRYFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    I V  + G +P   +  +LE      AH+++
Sbjct: 73  CQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEH----GAHVVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L+L  ++        + L +    +   ++        +TL+ ++ 
Sbjct: 129 GTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPER-RQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
               I K+ +        + V +     D  IE+    +   ++   +   ++  +  + 
Sbjct: 188 YPDGIEKLAKTFMRDP--RQVKVESLHADSQIEQRFFEIDPKQRMDAVVRLLQHFRPQSC 245

Query: 501 RSVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            +  +      E   +      S   +HG +   +++ V+  F N +C +L+AT V   G
Sbjct: 246 VAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+     +I           +H++ GR GR  E    + L  P  +  +     + K  
Sbjct: 306 LDIAALETVINVELARDPEVHIHRI-GRSGRAGEKGLALSLVAPAEASRAQAIEDLQKQP 364

Query: 615 EDGF-------------------LIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD 653
              +                    IA     + + G++LG     +G+P   + +  + D
Sbjct: 365 LAWYALGQLKASPEPLLPPMSTLCIAGGRKDKVRPGDLLGALTGDAGLPGSAVGKIAIFD 424

Query: 654 --SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
             + + I R  A   L +  +   ++G+S ++ L
Sbjct: 425 FQAFVAIERGLAHQALKRLSE-GKIKGRSFKVRL 457


>gi|302782315|ref|XP_002972931.1| hypothetical protein SELMODRAFT_98552 [Selaginella moellendorffii]
 gi|300159532|gb|EFJ26152.1| hypothetical protein SELMODRAFT_98552 [Selaginella moellendorffii]
          Length = 534

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 133/362 (36%), Gaps = 37/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L+          +   + GSGKTL  L+     V A        G  
Sbjct: 112 EPTAIQAQGWPMALKGRD------LVGLAETGSGKTLAYLLPAIVHVNAQPYLAPGDGPI 165

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +   K+  +++I    I G  P+  + + L+R       I+I T 
Sbjct: 166 VLVLAPTRELAVQIQQESAKFGSSSKIKSTCIYGGAPKGPQIRDLQR----GVEIVIATP 221

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       ++  +++DE  R          +K            P  +TL  +
Sbjct: 222 GRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIR------PDRQTLYWS 275

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +    D+ ++  +        T+     + +  I +   V+++ +K   +   ++E  + 
Sbjct: 276 ATWPKDVEQLANQFLHDPYKVTIGSSSLKANHSIAQHVEVVNDYEKYQKLIKLLDEFMDG 335

Query: 498 ------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   ++              IHG  S  +++ V+  FK G   ++ AT V 
Sbjct: 336 GKILIFMETKRGCDQVTKQLRMEGWPALSIHGDKSQAERDWVLSEFKTGKSPIMTATDVA 395

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D   +I  +        +H++ GR GR     +    +    +K++   +S+L
Sbjct: 396 ARGLDVKDIRYVINYDFPGSCEDYVHRI-GRTGRAGAKGTAYTFFTVSNAKHARELVSIL 454

Query: 612 KN 613
             
Sbjct: 455 SE 456


>gi|291533463|emb|CBL06576.1| Transcription-repair coupling factor (superfamily II helicase)
           [Megamonas hypermegale ART12/1]
          Length = 391

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 15/230 (6%)

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           ++ +G  D+S I   P  R P++T +I  N +  + + +K  +  G + Y+I  ++E   
Sbjct: 1   MSLVGARDMSVIETPPQERFPVQTYVIENNDM-IIKDAIKREIRRGGQVYFIYNRVETID 59

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           +          + L       I I HG+MS+ + E  M +F  G   +L+AT++IE G+D
Sbjct: 60  KMY-------LHLLSMLPDVKIGIAHGQMSEEELERAMLNFYEGKYDILLATSIIENGLD 112

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
           V +A+ III +A++FGL+QL+Q+RGRVGR ++++    +Y     LS+ +  RL  +K  
Sbjct: 113 VSNANTIIIYDADYFGLSQLYQMRGRVGRSKQMAFAYFIYQKDKILSEMAEKRLQAIKEF 172

Query: 615 ---EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                GF IA  DL+ R  G++LG +Q G         E++  LLE A +
Sbjct: 173 AQLGSGFKIAMRDLEIRGAGDLLGSQQHGHIS--SVGFEMYCRLLEEAVE 220


>gi|262174005|ref|ZP_06041682.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
 gi|261891363|gb|EEY37350.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
          Length = 643

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 29/398 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +   +   QA++MA
Sbjct: 28  SPTPIQAAAIPVLLEGRD------ALGKAQTGTGKTAAFSLPLLNKLNLSQHKPQAIVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN   + V  I G      + +AL+      AHI++GT    +
Sbjct: 82  PTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS----GAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M   P   + ++ ++     +
Sbjct: 138 DLITRDRL---HLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMV 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            +I E+   R P    +   N+    +E+   V+   +K   +   +E ++         
Sbjct: 195 KEIVERFL-RNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V +++ +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQ 372

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +   D  +  E  +  + Q        +  E    L+E
Sbjct: 373 LPHRD--KVAESRLTKLGQELAADKEFSSLERFAELVE 408


>gi|194894625|ref|XP_001978097.1| GG17877 [Drosophila erecta]
 gi|190649746|gb|EDV47024.1| GG17877 [Drosophila erecta]
          Length = 1222

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 79/377 (20%), Positives = 151/377 (40%), Gaps = 42/377 (11%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K    +LR + F  PT  Q  AI  I+           I     GSGKTL  ++ M   
Sbjct: 517 SKKEMDVLRRLGFEKPTPIQCQAIPAIMSGRD------LIGIAKTGSGKTLAFILPMFRH 570

Query: 318 VEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +          G  A+IMAP   L  Q  + I+K++++  +    + G    + +   L+
Sbjct: 571 ILDQPSLEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELK 630

Query: 370 RIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           R     A II+ T     D +           ++  V++DE  R                
Sbjct: 631 R----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVM----- 681

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             ++    P  +T++ ++     +  +  +   +KPI+ ++   + + + +E+  V+L++
Sbjct: 682 -RIIDNVRPDRQTVMFSATFPRQMEALARR-ILKKPIEVIVGGRSVVCKDVEQNVVILND 739

Query: 482 GKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534
             K + +   +   +E      F    E  + L      +      +HG +   D++S +
Sbjct: 740 DAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTI 799

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR  +  S   
Sbjct: 800 IDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHR-CGRTGRAGKKGSAYT 858

Query: 595 LYHPPLSKNSYTRLSVL 611
              P  S+ +   +  L
Sbjct: 859 FITPEQSRYAGDIIRAL 875


>gi|149196871|ref|ZP_01873924.1| Probable ATP dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
 gi|149139981|gb|EDM28381.1| Probable ATP dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
          Length = 537

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 82/361 (22%), Positives = 145/361 (40%), Gaps = 23/361 (6%)

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +    + +E  I Q +       P+  QE AI  +L           I Q   G+GKT 
Sbjct: 1   MDKFTALGLEPWITQCLEAKGFKEPSPIQEQAIPVLLS-----QDHDIIGQAQTGTGKTA 55

Query: 309 VALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
              + +   +E G    QA+I+ P   LA Q  E IK + +   I    + G  P   ++
Sbjct: 56  AFGLPIVQKIEPGLKKPQALILCPTRELAIQVNEEIKSFCKGRGITTVTLYGGAPIMDQK 115

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           +AL++       +++ T       I+  KL L  ++        + L +        VL 
Sbjct: 116 RALKK----GVDLVVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVL- 170

Query: 426 MTATPIPRTLVL-TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             A+P  RT+++ ++     + KI E       I           E I+++        K
Sbjct: 171 -KASPDDRTVLMFSATMPPRLKKIAESYM-HNSITIKAKSETMTMETIDQVVYEAYPENK 228

Query: 485 AYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
              +C  ++ +K+         +  VE+ ++   +   +   IHG ++   +E ++  F+
Sbjct: 229 FAALCRIMDLEKDFYGIIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFR 288

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    LLIAT V   GIDV D S I+  +      + +H++ GR GR  +  + I L  P
Sbjct: 289 NRNISLLIATDVAARGIDVTDLSHIVNFSLPEQFESYVHRI-GRTGRAGKTGTAITLITP 347

Query: 599 P 599
            
Sbjct: 348 K 348


>gi|27379459|ref|NP_770988.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110]
 gi|27352611|dbj|BAC49613.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 500

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/341 (19%), Positives = 125/341 (36%), Gaps = 26/341 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI  +L       R   +     G+GKT   ++ M   +E G       + +
Sbjct: 23  TPTPIQEQAIPHVLA------RKDVLGIAQTGTGKTAAFVLPMLTILEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   +Y    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDAKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D  +   L+L  V E        R+           +        +TL  T+    +I
Sbjct: 133 LLDHTERGGLLLTGV-ELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPPEI 191

Query: 446 SKITE-------KPAGRKPIKTVI-IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +ITE       K    KP  T + +  +++    +  +      +              
Sbjct: 192 RRITETFLHNPQKVEVSKPATTAVTVTQSQVPAGKKAHEKRELLRRLLREAKDLKNAIIF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N +  V   +   +    S+  +HG M    + + ++ F+ G   LL+A+ V   G+D+
Sbjct: 252 CNRKREVAIVHKSLQKHGFSVGALHGDMDQPARMAALEQFRKGELPLLVASDVAARGLDI 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            + S +   +  H     +H++ GR GR     + I +  P
Sbjct: 312 PEVSHVFNFDVPHHPDDYVHRV-GRTGRAGRSGTAISIVTP 351


>gi|324502886|gb|ADY41264.1| ATP-dependent RNA helicase DDX46 [Ascaris suum]
          Length = 784

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 165/450 (36%), Gaps = 46/450 (10%)

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           + + +    +  E     L+ +       +   + + P +   +  T+   +    +   
Sbjct: 48  MEQVVDDFDI--EKAASSLIARGRQLPQTDHSKVYYRPFRKDFYVETAELAKMTKKEVDQ 105

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKI--LRNIPFS-PTKSQESAIKDILQDMSQK 291
             +   + +R +   +        G   + +  L+ + ++ PT  Q  AI  I+      
Sbjct: 106 YREELDIRVRGKNCPKPVRSWAQCGVEWKILNTLKKLEYTKPTAIQAQAIPAIMSGRDV- 164

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKK 343
                I     GSGKTL  L+ M   +          G  AVIM+P   LA Q ++   K
Sbjct: 165 -----IGIAKTGSGKTLAFLLPMFRHIMDQPELEELDGPIAVIMSPTRELAMQTWKEANK 219

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKL 395
           + +   I V  + G +  + +   L+R     A +I+ T     D +           ++
Sbjct: 220 FAKPLNIRVACVYGGVGISDQIGDLKR----GAEVIVCTVGRLTDMLAANKGKVTNLRRV 275

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
             +++DE  R           K            P  +T++ ++     +  +  K    
Sbjct: 276 TYLVLDEADRMFDMGFEPQVMKIVNNIR------PDRQTVLFSATFPRQMEALARKILD- 328

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLH 511
           KP++ ++   + + + + +  V+L E +K   +   +    E      F    E+ + L 
Sbjct: 329 KPVEILVGGKSVVCDDVSQNVVILEEHQKMLKLLELLGVYWEHGNVLVFVDKQEKADELV 388

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                S    A +HG +   D++S +  FK    KLL+AT+V   G+DV    +++  + 
Sbjct: 389 AQLMRSGYNCAPLHGGIDQFDRDSTILDFKAAKIKLLVATSVAARGLDVKKLILVVNYDC 448

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +     +H++ GR GR            P
Sbjct: 449 PNHYEDYVHRV-GRTGRAGNKGYAYTFILP 477


>gi|269968866|ref|ZP_06182847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio
           alginolyticus 40B]
 gi|269826516|gb|EEZ80869.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio
           alginolyticus 40B]
          Length = 421

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/362 (19%), Positives = 141/362 (38%), Gaps = 40/362 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-----QAVI 326
           +PT  QE +I  +L           +     G+GKT    + +   V+        QA+I
Sbjct: 29  TPTPVQEKSIPHVLAGK------NLLAAAQTGTGKTAAFGLPIIQTVQQKKLNGTPQALI 82

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ ++ + +Y+  T++ +  + G      +++ LE      A I+I T    
Sbjct: 83  LVPTRELAQQVFDNLNQYSAETELRIVCVYGGTSIGVQKRKLEE----GADILIATPGRL 138

Query: 387 QDSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLV 436
            D +        +   L+L   D     G    L+    +      +LL +AT   R   
Sbjct: 139 LDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQILLFSATFEKRIKT 198

Query: 437 LTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +         ++   PA      +  ++ P+++  +      ++ S   +   +  + ++
Sbjct: 199 IAYKLMESPVEVEVSPANTTAETVTQMVYPVDKKRKRELLAYLIGSRNWQQVLVFTKTKQ 258

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             +       E    L      +++I +G  S   ++  +D FK G  + LIAT V   G
Sbjct: 259 GSD-------ELAKELKLDGIKAVSI-NGDKSQGARQRALDEFKQGKVRALIATDVAARG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+ +   ++  +        +H++ GR GR  +    + L    +S++    L  ++N 
Sbjct: 311 LDIQELEQVVNFDMPFKAEDYVHRI-GRTGRAGKSGLAVSL----MSRDEEYLLQAIENL 365

Query: 615 ED 616
            D
Sbjct: 366 LD 367


>gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 678

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 128/360 (35%), Gaps = 36/360 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVIM 327
           T  Q +AI   L           +     G+GKT    + +   +  G       +A+++
Sbjct: 26  TPIQAAAIPVALAGQDV------LGIAQTGTGKTAAFTLPLIDKLMNGRAKARMPRALVI 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA Q     +KY + T++   ++ G +    + K L+R       ++I T     
Sbjct: 80  APTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQEKKLDR----GVDVLIATPGRLL 135

Query: 388 DSIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           D  +  KL++  V        D     G                  L  +AT  P    L
Sbjct: 136 DHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTLFFSATMPPEITRL 195

Query: 438 TSLGDIDISKI-TEKPAGRKPIKT--VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           T     D  +I   +PA      T  ++   +   +        L E  +          
Sbjct: 196 TKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLALRALIEKAQIETGIVFCNR 255

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           K E +         SL  H   + AI HG +    +   + +F++G+ K+L+A+ V   G
Sbjct: 256 KTEVDV-----VAKSLKSHGFDAAAI-HGDLDQSQRTKTLAAFRDGSLKILVASDVAARG 309

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+   S +   +  H     +H++ GR GR        +L  P   K     + ++ +T
Sbjct: 310 LDIPAVSHVFNYDVPHHADDYVHRI-GRTGRAGRSGVTYMLVTPADDKGFDKVVKLIGST 368


>gi|39995299|ref|NP_951250.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens PCA]
 gi|39982061|gb|AAR33523.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens PCA]
          Length = 460

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 93/451 (20%), Positives = 180/451 (39%), Gaps = 77/451 (17%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ ++  T  Q  ++  IL           I +   GSGKT    I + + ++A    
Sbjct: 19  LASLGYAEMTPIQAHSLPLILAGKDV------IARAKTGSGKTAAFGIGLLSRLDALSFR 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  + T  I +  I G +P   +  +LE      AH++I
Sbjct: 73  VQALVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQLGSLEH----GAHVVI 128

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++           L+L   D     G Q  +           L+  A P  
Sbjct: 129 GTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDIS---------ALIAAAPPKR 179

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I+ ++     R+P++  +  ++  +  IE++   +  G++   +   +
Sbjct: 180 QTLLFSATYPDSIAAMSA-GVQREPVEVSVDEVHG-EGAIEQVFYEVDSGQRIEAVERIL 237

Query: 493 EEKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              +        +      E  N+L     +++AI HG +   +++ V+  F N +  +L
Sbjct: 238 GHYRPESALIFCNTKLECQEVANALAVRGYAALAI-HGDLDQRERDRVLVRFANRSASVL 296

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+D+ + S +I            H++ GR GR  E    + L  P  S+   
Sbjct: 297 VATDVAARGLDIKELSAVINYELTRNPEVHTHRI-GRTGRAGERGLAVSLVTPRESRLIA 355

Query: 606 TRLSVLKNTEDGFLIAEEDL-------------------------KQRKEGEILG--IKQ 638
               V      G +IA  DL                          + + G+ILG    +
Sbjct: 356 AIADVP-----GSIIARGDLSTLAPLTAKPPLPPMVTLCIDGGRKNKLRPGDILGALTGE 410

Query: 639 SGMPKFLIAQPELHD--SLLEIARKDAKHIL 667
            GMP   + + ++ D  + + IAR+ ++  L
Sbjct: 411 GGMPASEVGKIDVFDFFTYVAIARQSSEQAL 441


>gi|319951788|ref|YP_004163055.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319420448|gb|ADV47557.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 429

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 149/401 (37%), Gaps = 49/401 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQA 324
           PT  QE +I  +L+          +     G+GKT    I +   +        +   +A
Sbjct: 24  PTPIQEKSIPILLKGKD------LLGVAQTGTGKTAAFGIPILHHIYTNNSGIGKRKIKA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E    Y + T I   +I G + Q  +  AL +       I+I T  
Sbjct: 78  LVVTPTRELAIQIGESFTAYARFTGIKNTVIFGGVKQGKQTDALRQ----GVEILIATPG 133

Query: 385 LFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D +         L  V++DE  +      +   +K      ++       ++L  ++
Sbjct: 134 RLLDLMNQGFISLRDLEYVVLDEADQMLDMGFIHDVKK------IIAKLPAKRQSLFFSA 187

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                I ++++K  G     T I P     E +E+    + +G K   +   IE K+   
Sbjct: 188 TMPKTIVELSQKILGEFEQVT-IKPEQATAEKVEQAIYFVPKGDKVKLLVHLIETKEAKA 246

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    +   L +    + A IHG  S   +++ ++ FK+G   +L+AT +   
Sbjct: 247 VLVFSRTKHGANKIVKLLDKAGINAAAIHGNKSQTARQNALNDFKDGKLTVLVATDIAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+ D S+++  +  +     +H++ GR GR       +                ++K 
Sbjct: 307 GIDIDDLSLVVNYDLPNVPETYVHRI-GRTGRANASGVALSFCDREERAYLKDIQKLIKQ 365

Query: 614 T----------EDGFLIAEEDLKQR--KEGEILGIKQSGMP 642
           T          +DG    E D   R  + G+    + SG  
Sbjct: 366 TIPTVTDHPFKDDGSRPVEVDTDDRPKRPGQQNRSRNSGQK 406


>gi|229514239|ref|ZP_04403700.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
 gi|229522353|ref|ZP_04411769.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
 gi|229528334|ref|ZP_04417725.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
 gi|229334696|gb|EEO00182.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
 gi|229340338|gb|EEO05344.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
 gi|229348219|gb|EEO13177.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
          Length = 653

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 29/398 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +   +   QA++MA
Sbjct: 38  SPTPIQAAAIPVLLEGRD------ALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMA 91

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN   + V  I G      + +AL+      AHI++GT    +
Sbjct: 92  PTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS----GAHIVVGTPGRVK 147

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M   P   + ++ ++     +
Sbjct: 148 DLITRDRL---HLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMV 204

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            +I E+   R P    +   N+    +E+   V+   +K   +   +E ++         
Sbjct: 205 KEIVERFL-RDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 263

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 264 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 323

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V +++ +   
Sbjct: 324 ITHVYNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQ 382

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +   D  +  E  +  + Q        +  E    L+E
Sbjct: 383 LPHRD--KVAESRLTKLGQELAADKEFSSLERFADLVE 418


>gi|237752663|ref|ZP_04583143.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376152|gb|EEO26243.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430]
          Length = 515

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 146/378 (38%), Gaps = 34/378 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            P+  Q+ AI  IL  +        I Q   G+GKT    + +   ++  G  + +I+ P
Sbjct: 36  EPSPIQKEAIPLILDGLD------IIAQAQTGTGKTAAFGLPLINNLKNDGSIEVLIVTP 89

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  +  ++    + G  P   + + LE+    +  +II T     D 
Sbjct: 90  TRELAMQVSDEIFKLGKYNRVKTVSLFGGQPIRRQIELLEK----KPQVIIATPGRLLDH 145

Query: 390 IQYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVL 437
           ++  +L        +L   DE    G         T  ++    LL +AT P P + L  
Sbjct: 146 LRNERLKNFYPSVVVLDESDEMLDMGFLDDIEEIFTYLSSDRQTLLFSATMPTPIKHLAQ 205

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
             L +  + KIT+     + I      IN  +     ++++ SE  +   I  +      
Sbjct: 206 KILSNPKLIKITQDDTTNQDISQRYYIINEQEREDAIVRLIDSEMPQKAIIFTR------ 259

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   +  +            +HG M   ++   + +FK+ T  +L+AT +   G+D+
Sbjct: 260 --MKKEADILSERLLSRGFKAGALHGDMEQRERVKSIKAFKDSTIDILVATDIAARGLDI 317

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              S +   +      + +H++ GR GR  +    I L  P   K         K + + 
Sbjct: 318 SGVSHVFNFHIPLNPESYVHRI-GRTGRAGKKGVAITLATPLEFKELRRIKENTKASIEL 376

Query: 618 FLI-AEEDLKQRKEGEIL 634
           + I + +D   +K+  IL
Sbjct: 377 YEIPSIQDTMDKKDSNIL 394


>gi|195588318|ref|XP_002083905.1| GD13105 [Drosophila simulans]
 gi|194195914|gb|EDX09490.1| GD13105 [Drosophila simulans]
          Length = 814

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/364 (20%), Positives = 129/364 (35%), Gaps = 35/364 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       +           +     GSGKTL  ++     +          G  
Sbjct: 176 KPTAIQAQGWPIAMSGRD------LVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPI 229

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  NT +    I G  P+  + + LER       I+I T 
Sbjct: 230 ALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLER----GVEIVIATP 285

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 286 GRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKE 345

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L    L +     I             I+ +   +E + +L  +L++         +
Sbjct: 346 VRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTDISAE----NE 401

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +       +  V+               IHG  S  +++ V+ SF+NG   +L+AT V 
Sbjct: 402 TKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVA 461

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D   +I  +        +H++ GR GR     +   L+    +  +   + VL
Sbjct: 462 ARGLDVDDVKFVINYDYPSNSEDYVHRI-GRTGRSNNTGTAYTLFTHSNANKANDLIQVL 520

Query: 612 KNTE 615
           +   
Sbjct: 521 REAN 524


>gi|195478796|ref|XP_002100656.1| GE17181 [Drosophila yakuba]
 gi|194188180|gb|EDX01764.1| GE17181 [Drosophila yakuba]
          Length = 1215

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 79/377 (20%), Positives = 151/377 (40%), Gaps = 42/377 (11%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K    +LR + F  PT  Q  AI  I+           I     GSGKTL  ++ M   
Sbjct: 510 SKKEMDVLRRLGFEKPTPIQCQAIPAIMSGRD------LIGIAKTGSGKTLAFILPMFRH 563

Query: 318 VEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +          G  A+IMAP   L  Q  + I+K++++  +    + G    + +   L+
Sbjct: 564 ILDQPSLEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELK 623

Query: 370 RIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           R     A II+ T     D +           ++  V++DE  R                
Sbjct: 624 R----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVM----- 674

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             ++    P  +T++ ++     +  +  +   +KPI+ ++   + + + +E+  V+L++
Sbjct: 675 -RIIDNVRPDRQTVMFSATFPRQMEALARR-ILKKPIEVIVGGRSVVCKDVEQNVVILND 732

Query: 482 GKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534
             K + +   +   +E      F    E  + L      +      +HG +   D++S +
Sbjct: 733 DAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTI 792

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR  +  S   
Sbjct: 793 IDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHR-CGRTGRAGKKGSAYT 851

Query: 595 LYHPPLSKNSYTRLSVL 611
              P  S+ +   +  L
Sbjct: 852 FITPEQSRYAGDIIRAL 868


>gi|195376889|ref|XP_002047225.1| GJ13322 [Drosophila virilis]
 gi|194154383|gb|EDW69567.1| GJ13322 [Drosophila virilis]
          Length = 797

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/395 (17%), Positives = 140/395 (35%), Gaps = 44/395 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              + ++ + + +     PT  Q  A+   L           I     GSGKT   +  +
Sbjct: 284 FGFDEQLLKSVRKAEYTQPTPIQAQAVPAALSGRD------IIGIAKTGSGKTAAFIWPL 337

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   +I+AP   L+ Q Y   KK+ +   I V    G   +  + K
Sbjct: 338 LTHLMDQRELRPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSK 397

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAP 421
           ALE+       I++ T     D ++       ++  +++DE  R          +     
Sbjct: 398 ALEQGCE----IVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNH 453

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                   P  +TL+ ++     I ++  +     P++ V   +N  ++ I +   V   
Sbjct: 454 VR------PDRQTLLFSATFKKRIERLA-RDILTDPVRIVQGDLNEANQDITQHVYVFPN 506

Query: 482 GKKAY--WICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
             + +   +C  ++   E         ++  E   +       +  ++HG M   D+  V
Sbjct: 507 PLQKWNWLLCHLVKFLSEGAVLVFVTKKADAETVANNLIVKEHNCLLLHGDMDQADRNKV 566

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  FK   C +L+AT V   G+D+     ++  +         H++ GR GR  E  +  
Sbjct: 567 ITQFKRKECDILVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRI-GRTGRAGEKGNAY 625

Query: 594 LLYHPPLSKNSYTRLSVLKNT-----EDGFLIAEE 623
            L      + +   +  L+       +D   +A +
Sbjct: 626 TLVTDKDKEFAGHLVRNLEGADQTVPDDLMELAMK 660


>gi|24662330|ref|NP_648413.1| CG6418 [Drosophila melanogaster]
 gi|7294797|gb|AAF50131.1| CG6418 [Drosophila melanogaster]
 gi|16769458|gb|AAL28948.1| LD32732p [Drosophila melanogaster]
 gi|220946788|gb|ACL85937.1| CG6418-PB [synthetic construct]
          Length = 791

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 79/398 (19%), Positives = 146/398 (36%), Gaps = 50/398 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              + ++ + + +     PT  Q  A+   L           I     GSGKT   +  M
Sbjct: 274 FGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRD------IIGIAKTGSGKTAAFIWPM 327

Query: 315 AAAVEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              V    Q         +I+AP   L+ Q Y   KK+ +   + V    G   +  + K
Sbjct: 328 LMHVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSK 387

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK- 417
           ALE+     A II+ T     D ++           L+L   D     G + +++     
Sbjct: 388 ALEQ----GAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNH 443

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITE---KPAGRKPIKTVII---PINRIDE 470
                  L+ +AT   R   L      D  +I +     A +   ++V +   P+ + + 
Sbjct: 444 VRPDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNW 503

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           ++  L   LSEG    ++  +++ +  SN   + E           +  ++HG M   D+
Sbjct: 504 LLCHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKE----------YNCLLLHGDMDQADR 553

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             V+  FK   C +L+AT V   G+D+     ++  +         H++ GR GR  E  
Sbjct: 554 NKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRI-GRTGRAGEKG 612

Query: 591 SCILLYHPPLSKNSYTRLSVLKNT-----EDGFLIAEE 623
           +   L      + +   +  L+       +D   +A +
Sbjct: 613 NAYTLVTDKDKEFAGHLVRNLEGADQLVPDDLMELAMK 650


>gi|28574962|ref|NP_648062.2| CG10077, isoform A [Drosophila melanogaster]
 gi|20976828|gb|AAM27489.1| GH10652p [Drosophila melanogaster]
 gi|28380590|gb|AAF50635.2| CG10077, isoform A [Drosophila melanogaster]
 gi|220947070|gb|ACL86078.1| CG10077-PA [synthetic construct]
 gi|220960420|gb|ACL92746.1| CG10077-PA [synthetic construct]
          Length = 818

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/364 (20%), Positives = 129/364 (35%), Gaps = 35/364 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       +           +     GSGKTL  ++     +          G  
Sbjct: 179 KPTAIQAQGWPIAMSGRD------LVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPI 232

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  NT +    I G  P+  + + LER       I+I T 
Sbjct: 233 ALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLER----GVEIVIATP 288

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 289 GRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKE 348

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L    L +     I             I+ +   +E + +L  +L++         +
Sbjct: 349 VRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTDISAE----NE 404

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +       +  V+               IHG  S  +++ V+ SF+NG   +L+AT V 
Sbjct: 405 TKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVA 464

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D   +I  +        +H++ GR GR     +   L+    +  +   + VL
Sbjct: 465 ARGLDVDDVKFVINYDYPSNSEDYVHRI-GRTGRSNNTGTAYTLFTHSNANKANDLIQVL 523

Query: 612 KNTE 615
           +   
Sbjct: 524 REAN 527


>gi|195021550|ref|XP_001985416.1| GH17046 [Drosophila grimshawi]
 gi|193898898|gb|EDV97764.1| GH17046 [Drosophila grimshawi]
          Length = 811

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/395 (17%), Positives = 141/395 (35%), Gaps = 44/395 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              + ++ + + +     PT  Q  A+   L           I     GSGKT   +  +
Sbjct: 297 FGFDDQLLKSVRKAEYTQPTPIQAQAVPTALSGRD------IIGIAKTGSGKTAAFIWPL 350

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   +I+AP   L+ Q Y   KK+ +   I V    G   +  + K
Sbjct: 351 LTHLMDQRELRPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSK 410

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAP 421
           ALE+       I++ T     D ++       ++  +++DE  R          +     
Sbjct: 411 ALEQGCE----IVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNH 466

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                   P  +TL+ ++     I ++  +     P++ V   +N  ++ I +   V   
Sbjct: 467 VR------PDRQTLLFSATFKKRIERLA-RDILTDPVRIVQGDLNEANQDITQHVYVFPN 519

Query: 482 GKKAY--WICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
             + +   +C  ++   E         ++  E  ++       +  ++HG M   D+  V
Sbjct: 520 PLQKWNWLLCHLVKFLSEGGVLVFVTKKADAETVSNNLLLKEHNCLLLHGDMDQADRNKV 579

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  FK   C +L+AT V   G+D+     +I  +         H++ GR GR  E  +  
Sbjct: 580 IMQFKRKECDILVATDVAARGLDIPHIRNVINYDIARDIDTHTHRI-GRTGRAGEKGNAY 638

Query: 594 LLYHPPLSKNSYTRLSVLKNT-----EDGFLIAEE 623
            L      + +   +  L+       +D   +A +
Sbjct: 639 TLVTDKDKEFAGHLVRNLEGADQAVPDDLMELAMK 673


>gi|77362320|ref|YP_341894.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76877231|emb|CAI89448.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 433

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 63/383 (16%), Positives = 137/383 (35%), Gaps = 38/383 (9%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 +   ++ Q +      + T  Q +AI  + +          +     G+GKT  
Sbjct: 1   MNFKSFSFAPELVQALDELNYHTLTPIQRAAIPAVRKGKDV------LASAQTGTGKTAA 54

Query: 310 ALIAMAAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
             + +   +            A+++AP   LA+Q     K + ++T + V  + G +  A
Sbjct: 55  FALPIIQKLFESEVSTTNAPHALVLAPTRELAEQIANNFKDFAKHTSLKVVSLFGGVNTA 114

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLK- 413
            +  AL+        I++ T     D I+           L+L   D     G  + ++ 
Sbjct: 115 GQANALKE----GVDIVVATPGRLLDHIRLGNLSLASVKHLVLDEADRMLDMGFIEEMQG 170

Query: 414 -LTQKATAPHVLLMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            +   A    +LL +AT     +      L   +I ++ +  +    +  V+ P+    +
Sbjct: 171 VIKSCADDRQILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVAHVVYPVEERRK 230

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
                +++  +  +   +   ++E  +       E    L+     + A+ HG  S  ++
Sbjct: 231 QELLSELIGKKNWQQVLVFVNMKETAD-------ELVTELNLDGIPA-AVCHGDKSQGNR 282

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
              +  FK G  ++L+AT V   GID+     +I  +        +H++ GR GR  +  
Sbjct: 283 RRALREFKEGKVRVLVATEVAARGIDIDGLPRVINIDLPWLAEDYVHRI-GRTGRAGKEG 341

Query: 591 SCILLYHPPLSKNSYTRLSVLKN 613
             I           +   +++  
Sbjct: 342 QAISFVSREEENMLFEIETLIGQ 364


>gi|225181200|ref|ZP_03734646.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
 gi|225168169|gb|EEG76974.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
          Length = 470

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 134/341 (39%), Gaps = 23/341 (6%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            N+ F   T  QE AI   L+ +        I Q   G+GKT    + M   +E  G   
Sbjct: 18  SNMGFEEATPIQEQAIPTALKGLD------LIGQAHTGTGKTAAFGVPMVEKLEKNGSTV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+++ P   LA Q  E + K  Q   I    + G      + + L++    +  II+GT
Sbjct: 72  QALVVTPTRELAVQVAEELNKIGQYKGIRTLPVYGGQDIGRQIRGLQK----RPQIIVGT 127

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D I+   + L  V         + L +        +L  T     +TL+ ++   
Sbjct: 128 PGRLLDHIRRRTVRLGQVSMVVLDEADEMLNMGFIEDIEAILQET-PQERQTLLFSATMP 186

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESN 499
             I ++  +   R P K  +          E+  +V+ E +K   +C  ++ +       
Sbjct: 187 GPIEQLARRFM-RDPQKISVRSKEVTVPNTEQFHMVMEERQKFDVLCRLLDTQSPDLAIV 245

Query: 500 FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F     R + L+E       S   IHG M+   ++SVM  FK+G+  +L+AT V   G+D
Sbjct: 246 FGRTKRRVDELYEALNKRGYSAEGIHGDMTQARRDSVMRQFKDGSIDILVATDVAARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +   + +   +      + +H++ GR GR       +    
Sbjct: 306 ITGVTHVYNFDIPQDPESYVHRI-GRTGRAGNTGMAVTFVS 345


>gi|85716308|ref|ZP_01047281.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
 gi|85696824|gb|EAQ34709.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
          Length = 482

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 76/349 (21%), Positives = 131/349 (37%), Gaps = 42/349 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           SPT  Q+ AI  +L       R   +     G+GKT   ++ M   +E G       + +
Sbjct: 23  SPTPIQDQAIPHVLA------RRDVLGIAQTGTGKTAAFVLPMLTLLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPI--PR 433
             D  +   L+L  V     DE  R      +   ++           L  TAT     R
Sbjct: 133 LLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPNEIR 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI----DEVIERLKVVLSEGKKAYWIC 489
            +    L +    +++        +    +  +R      E++  L     E K A   C
Sbjct: 193 RVTDAFLHNPQRIEVSRPATTAATVTQSQVSCSREPHEKRELLRHLLREAKELKNAIIFC 252

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         R V   + SL +H   S+  +HG M    + + +D F+ G   LL+A+ 
Sbjct: 253 NR--------KRDVAIVYKSLQKHG-FSVGALHGDMDQSARTASLDQFRKGELPLLVASD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           V   G+D+ + S ++  +  H     +H++ GR GR     + I +  P
Sbjct: 304 VAARGLDIPEVSHVLNFDVPHHPDDYVHRI-GRTGRAGRTGTAITIVCP 351


>gi|78184980|ref|YP_377415.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
 gi|78169274|gb|ABB26371.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
          Length = 624

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 132/343 (38%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q++A  +++           + Q   G+GKT    + +   +E+G    Q +++A
Sbjct: 93  DPSPIQKAAFPELMLGRD------LVGQAQTGTGKTAAFALPLLERLESGQKTPQVLVLA 146

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  K Y   +  + V  + G      +   L R       +++GT     
Sbjct: 147 PTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRR----GVDVVVGTPGRVM 202

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP--RTL 435
           D ++   L        +L   DE  R G    ++    Q      V+L +AT  P  R L
Sbjct: 203 DHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLFSATMPPEIRRL 262

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D     I  K    K I+   I +    ++    +V+ + G +   I  +    
Sbjct: 263 SKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEALQRVLDACGGEGVIIFART--- 319

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                + +        E     +A+++G +    +E  ++  ++G+  +L+AT V   G+
Sbjct: 320 -----KVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVATDVAARGL 374

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV    ++I  +      A +H++ GR GR       +L   P
Sbjct: 375 DVERIGLVINYDMPFDSEAYVHRI-GRTGRAGRTGEAVLFMTP 416


>gi|15889610|ref|NP_355291.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
 gi|15157502|gb|AAK88076.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 502

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 128/355 (36%), Gaps = 26/355 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L+          I     G+GKT    + +   +            +
Sbjct: 36  TPTPIQAKAIPLLLEGRD------LIGLAQTGTGKTAAFGLPIIEMLMKQADRPANRTTR 89

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   L  Q  + ++ + + T + +  + G      ++  LE+       I++ T 
Sbjct: 90  TLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQLQLEK----GTDILVATP 145

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D I    + L  V         Q L L        +  M   P  +TL+ ++    
Sbjct: 146 GRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRM-VPPKRQTLLFSATMPK 204

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---- 499
            IS++            V  P    D+V + +  V  +  K   +   + E  +      
Sbjct: 205 AISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKSLNENPDGRSIVF 264

Query: 500 --FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   E+     EH    +A IHG  S   +E  +  FK+G  K+L+AT V   GID+
Sbjct: 265 LRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLVATDVAARGIDI 324

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              + +   +      A +H++ GR  R       I    P  ++  +    ++K
Sbjct: 325 PAVTHVFNYDLPEVPDAYVHRI-GRTARAGRDGIAIAFCAPDETRLLHDIEKLMK 378


>gi|310756760|gb|ADP20521.1| ATP-dependent RNA helicase DDX3X [Fukomys anselli]
          Length = 662

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 145/379 (38%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  ID+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDK-RSF 430

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 431 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLFHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 544 FFNDRNGNITKDLLDLLVE 562


>gi|46108284|ref|XP_381200.1| hypothetical protein FG01024.1 [Gibberella zeae PH-1]
 gi|91207410|sp|Q4IP34|PRP5_GIBZE RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
          Length = 1227

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 147/393 (37%), Gaps = 47/393 (11%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ++ N+ +  PT  Q  A+  ++           I     GSGKT+  L+ M   ++    
Sbjct: 611 VVDNLGYEKPTPIQMQALPALMSGRDV------IGVAKTGSGKTVAFLLPMFRHIKDQPP 664

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +IM P   LA Q ++  K + +   +      G  P   +   L+R     
Sbjct: 665 LKDTDGPIGLIMTPTRELAVQIHKDCKPFLKMMGLRAVCAYGGAPIREQIAELKR----G 720

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K      +   
Sbjct: 721 AEIIVCTPGRMIDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFEPQVMK------IFAN 774

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++     I  +T+K   + PI+  +   + + + IE++  V  E  K + 
Sbjct: 775 MRPDRQTILFSATMPRIIDSLTKK-VLKNPIEVTVGGRSVVAKEIEQIVEVRDEPSKFHR 833

Query: 488 ICPQIEEKKESNFRSV-------VERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
           +   + E  + +  +         E+ + L +           IHG    ID++S +  F
Sbjct: 834 VLELLGELYDRDEDARTLIFVERQEKADDLLKELMMKGYPCMSIHGGKDQIDRDSTISDF 893

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   +LIAT+V   G+DV    ++I  +A +     +H+  GR GR       +    
Sbjct: 894 KKGVVPILIATSVAARGLDVKQLKLVINYDAPNHLEDYVHR-AGRTGRAGNTGVAVTFVT 952

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           P     +      L+    G  I +   + RK 
Sbjct: 953 PEQENCAPGIAKALEQ--SGQPIPDRLNEMRKA 983


>gi|145629320|ref|ZP_01785119.1| transcription-repair coupling factor [Haemophilus influenzae
           22.1-21]
 gi|144978823|gb|EDJ88546.1| transcription-repair coupling factor [Haemophilus influenzae
           22.1-21]
          Length = 380

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 86/256 (33%), Positives = 136/256 (53%), Gaps = 17/256 (6%)

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +   G  D+S I+  PA R  IKT +   + +  V E +   +  G + Y++   +   +
Sbjct: 1   MAMNGIRDLSIISTPPARRLSIKTFVRQNDDL-VVREAILREILRGGQVYYLHNDVASIE 59

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                +  E+  +L     + + + HG+M + + E VM  F +    +L+ +T+IE GID
Sbjct: 60  -----NTAEKLTTLVPE--ARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGID 112

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
           V  A+ IIIE A+HFGLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  L+N 
Sbjct: 113 VPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENL 172

Query: 615 ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           ++   GF++A  DL+ R  GE+LG +QSG  + +     L+  LL+ A K  K    ++P
Sbjct: 173 DNLGAGFILATHDLEIRGAGELLGNEQSGQIESIGFS--LYMELLDAAVKALKE--GREP 228

Query: 672 DLTSVRGQSIRILLYL 687
            L  +  Q   I L +
Sbjct: 229 SLEELTQQQADIELRV 244


>gi|78485124|ref|YP_391049.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78363410|gb|ABB41375.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
          Length = 445

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 141/371 (38%), Gaps = 41/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L+          +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQAQAIPAVLEGKDV------MAAAQTGTGKTAGFTLPILERLSKGKPAGPNQARA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + ++ Y +   +   ++ G +    +   L +       I++ T  
Sbjct: 77  LILTPTRELAAQVSDSVETYGKQLSLKSTVVFGGVKINPQMMRLRK----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     +I++ +L ++++DE  R      +   ++       ++ A P  R  +L S
Sbjct: 133 RLLDLFNQNAIKFDQLEILVLDEADRMLDMGFIHDIKR-------ILKALPKNRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +  +   K     P++  + P N     + +    + +G+KA  +   I+E   S 
Sbjct: 186 ATFSNEIRQLAKGLVNNPVEISVTPRNTTATTVTQWIYPVDKGRKAALLTKLIKENDWSQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   + SFK+GT + L+AT +   
Sbjct: 246 VLIFSRTKHGANRLTKQLEGKGIKAAAIHGNKSQGARTKALASFKDGTVQALVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++  +  +     +H++ GR GR   +   + L      K      ++++ 
Sbjct: 306 GIDIDQLPHVVNFDLPNVAEDYVHRI-GRTGRAGAVGEAVSLVSADEVKELAGIENLIQK 364

Query: 614 T-----EDGFL 619
                  DGF 
Sbjct: 365 LLPRKIIDGFE 375


>gi|84502634|ref|ZP_01000753.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597]
 gi|84389029|gb|EAQ01827.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597]
          Length = 471

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 79/398 (19%), Positives = 158/398 (39%), Gaps = 51/398 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N++ K+ Q I      SPT  Q+ AI   L+          +     G+GKT    + M
Sbjct: 7   LNLDPKVLQAIADAGYESPTPIQQGAIPPALEGRDV------LGIAQTGTGKTASFTLPM 60

Query: 315 AAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
              +  G       +++++AP   LA Q  E    YT++ ++   ++ G +    +   +
Sbjct: 61  ITLLSKGRARARMPRSLVLAPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALI 120

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R       ++I T     D  +  KL+L     ++VDE  R      +   ++      
Sbjct: 121 DR----GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIER------ 170

Query: 424 LLMTATPI-PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL--- 479
            + + TP   +TL  ++    +I +IT       P +  +       E IE+  V+    
Sbjct: 171 -IFSLTPFTRQTLFFSATMAPEIERITNTFLSG-PARVEVARQATASETIEQGVVMFKGS 228

Query: 480 ---SEGKKAYWICPQIEEKKESNFRS---------VVERFNSLHEHFTSSIAIIHGRMSD 527
               EG +   +   + +++  + R+          V+      + +    A IHG +  
Sbjct: 229 RRDREGSEKRQVLRDLIDREGEDCRNAIIFCNRKTDVDVTAKSLKKYGFDAAPIHGDLEQ 288

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +   ++ F++G+ + L+A+ V   G+D+ + S +   +        +H++ GR GR  
Sbjct: 289 SQRTKTLEGFRDGSLRFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRI-GRTGRAG 347

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
                I++  P   KN     S+++ T     I   DL
Sbjct: 348 RSGKAIMICVPRDEKNLADIESLIEKT-----IPRIDL 380


>gi|328543973|ref|YP_004304082.1| DEAD/DEAH box helicase [polymorphum gilvum SL003B-26A1]
 gi|326413717|gb|ADZ70780.1| DEAD/DEAH box helicase domain protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 486

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 89/386 (23%), Positives = 153/386 (39%), Gaps = 48/386 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  +L+      R   +     G+GKT    + M   +E G       + +
Sbjct: 23  EPTAIQAGAIPQVLE------RRDVLGIAQTGTGKTASFTLPMLTLLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  +KY  N ++ V ++ G +  A + + ++R     A ++I T   
Sbjct: 77  ILEPTRELAAQVEENFEKYGVNHKLNVALLIGGVSFADQDRKIDR----GADVLIATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTL 435
             D ++  KL+L     +++DE  R      +   ++           L  +AT  P   
Sbjct: 133 LLDHVERGKLMLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEIQ 192

Query: 436 VLTSLGDIDISKITEKP--AGRKPIKTVIIPINRID-EVIERLKVVLSEG---KKAYWIC 489
            LT     + +KI   P  +  + +   I+    +D E   +L+ +L E    K A   C
Sbjct: 193 RLTETFLQNPAKIEVAPRSSTAENVTQYIVAAGSVDFEKRAKLRELLGEAEDLKNAIVFC 252

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         R V   F SL  H   ++  +HG M    +   ++SF+ GT  LL+A+ 
Sbjct: 253 NR--------KRDVTTLFRSLERHG-FNVGCLHGDMDQRTRMQTLESFRKGTLTLLVASD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D S +   +        +H++ GR GR         L     SK       
Sbjct: 304 VAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGVSYTLVTGEDSKYLSAIEK 362

Query: 610 VLKNTEDG------FLIAEEDLKQRK 629
           ++  +         F  AE + K+R+
Sbjct: 363 LINKSITWLGEPLDFEAAEAERKERR 388


>gi|227888879|ref|ZP_04006684.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
           ATCC 33200]
 gi|227850572|gb|EEJ60658.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
           ATCC 33200]
          Length = 484

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 74/348 (21%), Positives = 134/348 (38%), Gaps = 39/348 (11%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE  I  +L+          I Q   G+GKT    + +   ++      QA+
Sbjct: 20  GFEEATPIQEKTIPLVLEGKDV------IGQAQTGTGKTAAFGLPILQNLDKQHDSIQAI 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E + +  ++ +  V+++ G      + +AL++       I++GT   
Sbjct: 74  IIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQ----TPAILVGTPGR 129

Query: 386 FQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D ++           ++L   DE    G  Q +           +L  A+   +TL+ 
Sbjct: 130 LLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDI---------ESILKYASSKHQTLLF 180

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I +I EK     P    I        +I++  V   E +K   +C  I+ +  
Sbjct: 181 SATMPKPILRIGEKFMN-DPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLIDVQNP 239

Query: 497 --ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L     +     A IHG +S   + SV+  F+ G   +L+AT V 
Sbjct: 240 DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVA 299

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+   S +   +      + +H++ GR GR  +    +    P 
Sbjct: 300 ARGLDISGVSHVYNYDIPQDPDSYVHRI-GRTGRAGQNGMSVTFVTPN 346


>gi|305667396|ref|YP_003863683.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170]
 gi|88709444|gb|EAR01677.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170]
          Length = 432

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 132/363 (36%), Gaps = 40/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           SPT  QE A+  +L+          +     G+GKT    I +   +    Q        
Sbjct: 23  SPTPIQEQAVPILLKGKD------LLGCAQTGTGKTAAFAIPILQQIHNDRQSNDRHRKI 76

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   LA Q  E    Y + T I   +I G + Q  + +AL         I+I T
Sbjct: 77  KALVVTPTRELAIQIGESFTAYGKFTGIRNTVIFGGVKQGKQTQAL----KNGVDILIAT 132

Query: 383 HALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D +         +   ++DE  +      +   +K      ++    P  ++L  
Sbjct: 133 PGRLLDLMNQGFISLRDIEYAVLDEADQMLDMGFIHDIRK------IIAKLPPKRQSLFF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    DI  ++    G     T I P     E +E+L   +++  K   +   +E +  
Sbjct: 187 SATMPKDIVALSRTILGDFERVT-IKPEQATAEKVEQLVYFVNKSNKVKLLVHLLENRPN 245

Query: 498 -------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                         +    L +   +S AI HG  S   ++  +  FK G  K+LIAT +
Sbjct: 246 SSVLVFSRTKHGANKIVKKLGQADIASAAI-HGNKSQTARQKALGDFKAGELKVLIATDI 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GIDV D ++++  +  +     +H++ GR GR       I                +
Sbjct: 305 AARGIDVDDLALVVNFDLPNVPETYVHRI-GRTGRASASGIAISFCDRDEQPYLRDIEKL 363

Query: 611 LKN 613
           +K 
Sbjct: 364 IKQ 366


>gi|86137575|ref|ZP_01056152.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
 gi|85825910|gb|EAQ46108.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
          Length = 527

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/353 (19%), Positives = 133/353 (37%), Gaps = 46/353 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           SPT  Q  AI   L+          +     G+GKT    + M   +  G       +++
Sbjct: 24  SPTPIQAGAIPPALEGRDV------LGIAQTGTGKTASFTLPMITLLARGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    YT++ ++   ++ G +    + + +++       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDQLIDK----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     ++VDE  R      +   ++       + + TP   +TL  ++
Sbjct: 134 LLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIER-------IFSLTPFTRQTLFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK-------AYWICPQI 492
               +I +IT       P +  +       E IE+  V+    +K          +   I
Sbjct: 187 TMAPEIERITNTFL-SAPERIEVARQASASETIEQHVVLFKASRKDREASEKRTALRALI 245

Query: 493 EEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             + E         N +S V+      + +    A IHG +    +   +D F+ G  ++
Sbjct: 246 NAEGEKLTNGIIFCNRKSDVDIVAKSLKKYGFDAAPIHGDLDQSQRTKTLDGFREGKLRI 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           L+A+ V   G+DV   S +   +        +H++ GR GR       I +  
Sbjct: 306 LVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRI-GRTGRAGREGKAITICS 357


>gi|187933940|ref|YP_001887642.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722093|gb|ACD23314.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 526

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 78/359 (21%), Positives = 141/359 (39%), Gaps = 22/359 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGG 322
           + ++ F +P++ QE +I   L+          I Q   G+GKT      + + +    G 
Sbjct: 19  IDDLGFNTPSQIQEESIPVTLEGFD------LIGQAQTGTGKTAAYGCPILSRLNDTNGI 72

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + +KK ++  +  V  + G      + +AL R       I++GT
Sbjct: 73  KALILAPTRELAVQVNDELKKLSKYEKANVLPVYGGESIDRQIRALRRD---NIDIVVGT 129

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLTSLG 441
                D I    L L  VD       +    L          +++ TP   +TL+ ++  
Sbjct: 130 PGRVLDLINRKILKLNTVD--FLVLDEADEMLNMGFIEDIETIISNTPAERQTLLFSATM 187

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE---EKKES 498
              I+K+ +           I   +     IE+   +++   +   +C  ++        
Sbjct: 188 PAPIAKLAKNYMKADAKHVAIKRSSLTVSKIEQNYFMINNKHRLEALCRLLDLDNPSSAI 247

Query: 499 NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F    +  + L E        +  +HG MS + + + +  FK G+  LLIAT V   GI
Sbjct: 248 IFCRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLIATDVAARGI 307

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           DV   + +I  +      + +H++ GR GR     +   L  P           V K+T
Sbjct: 308 DVDGITHVINYDLPQDVESYVHRI-GRTGRANRTGTAYSLVSPKELGMLKQIQRVTKST 365


>gi|182416631|ref|ZP_02948044.1| cold-shock deAd box protein a [Clostridium butyricum 5521]
 gi|237668564|ref|ZP_04528548.1| putative helicase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182379523|gb|EDT77009.1| cold-shock deAd box protein a [Clostridium butyricum 5521]
 gi|237656912|gb|EEP54468.1| putative helicase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 369

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 136/373 (36%), Gaps = 43/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  QE +I+ I      KN    I +   G+GKTL  L+ +   +       QA+I+ 
Sbjct: 23  APTPIQEESIEII------KNGKDIIAEAGTGTGKTLAFLLPIFEQINPKSKDVQALILT 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q      K  ++ +I V    G    + + K L +       +I+ T     D
Sbjct: 77  PTRELALQITNEADKLNEDKKINVLACYGGKDISSQLKKLNK----NVQLIVATPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--LV 436
            I+   + L  V        D+    G +  +   + Q +    +L  +AT       L 
Sbjct: 133 HIERKTIDLKTVKTFVLDEADQMLFMGFKNEVEKIMEQMSKKKQMLCFSATMDSEVKKLA 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              + D  I  + ++      IK  ++      +     KV+  +      I  +     
Sbjct: 193 YRYMNDPAIISVKKEEVDMHSIKQFVVETTDRQKRDALCKVLDEDNPFMAIIFCRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   +   ++      + A IH  ++   +E +M SF+    + LIAT V   G+D
Sbjct: 249 ----KRRADDLETVMATRKYNCAKIHSDIAQNKRERIMKSFREAKLQYLIATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + I   +      + +H++ GR GR  E     +   P            L+  ED
Sbjct: 305 ITGVTHIYNYDIPETPESYVHRI-GRTGRAGESGITCMFVDP-------KNKRALEEIED 356

Query: 617 --GFLIAEEDLKQ 627
             GF I    ++ 
Sbjct: 357 TIGFKIPRRSVEL 369


>gi|328470415|gb|EGF41326.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus 10329]
          Length = 643

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 144/365 (39%), Gaps = 27/365 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   ++      QA+++A
Sbjct: 28  SPTPIQAAAIPHLLEG------ADALGKAQTGTGKTAAFSLPLLNKLDLDQRKPQAIVLA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   +N   + V  I G      + +AL       AH+++GT    Q
Sbjct: 82  PTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL----KNGAHVVVGTPGRVQ 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDI 445
           D I   +L    +DE + F + +  ++        V  ++  A    + ++ ++     +
Sbjct: 138 DLINRERL---HLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPML 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
             I E+   R P+   +   N   + +++   V+   +K   +   +E ++         
Sbjct: 195 KNIVERFL-RDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V K++ +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQ 372

Query: 620 IAEED 624
           +   D
Sbjct: 373 LPLRD 377


>gi|148906344|gb|ABR16327.1| unknown [Picea sitchensis]
          Length = 504

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 138/363 (38%), Gaps = 39/363 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L+          I   + GSGKTL  L+     V A        G  
Sbjct: 121 EPTPIQAQGWPMALKGRD------LIGIAETGSGKTLAYLLPAIVHVNAQPYLAPGDGPI 174

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +   K+  +++I    I G  P+  + + L +       I+I T 
Sbjct: 175 VLVLAPTRELAVQIQQEAAKFGASSKIKNTCIYGGAPKGPQVRDLSK----GVEIVIATP 230

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       ++  +++DE  R          +K  +         P  +TL  +
Sbjct: 231 GRLIDMLESQHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIR------PDRQTLYWS 284

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +    ++ ++  + +   P K +I   + + +  IE++  ++SE +K   +   +EE  +
Sbjct: 285 ATWPKEV-ELLARQSLHNPYKVIIGSSDLKANHAIEQIVEIVSEHEKYTRLIQLLEEIMD 343

Query: 498 S-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +   ++              IHG  S  +++ V+  FK G   ++ AT V
Sbjct: 344 GSRLLIFLETKKGCDQVTRKLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D   +I  +        +H++ GR GR     +    +    ++ +   + +
Sbjct: 404 AARGLDVKDIKCVINYDFPGSMEDYVHRI-GRTGRAGAKGTAYTYFTAANARFARDLIKI 462

Query: 611 LKN 613
           L+ 
Sbjct: 463 LEE 465


>gi|15595652|ref|NP_249146.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
 gi|107099439|ref|ZP_01363357.1| hypothetical protein PaerPA_01000451 [Pseudomonas aeruginosa PACS2]
 gi|254237315|ref|ZP_04930638.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719]
 gi|9946315|gb|AAG03844.1|AE004483_2 RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
 gi|126169246|gb|EAZ54757.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719]
          Length = 458

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 83/454 (18%), Positives = 175/454 (38%), Gaps = 49/454 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ +   T  Q  ++  ILQ          I Q   GSGKT    +A+ + +     G
Sbjct: 19  LDSLGYREMTPIQAQSLPLILQGHD------LIAQAKTGSGKTAAFGLALLSPLNPRYFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    I V  + G +P   +  +LE      AH+++
Sbjct: 73  CQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEH----GAHVVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L+L  ++        + L +    +   ++        +TL+ ++ 
Sbjct: 129 GTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPER-RQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
               I K+ +        + V +     D  IE+    +   ++   +   ++  +  + 
Sbjct: 188 YPDGIEKLAKTFMRDP--RQVRVESLHADSQIEQRFFEIDPKQRMDAVVRLLQHFRPQSC 245

Query: 501 RSVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            +  +      E   +      S   +HG +   +++ V+  F N +C +L+AT V   G
Sbjct: 246 VAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+     +I           +H++ GR GR  E    + L  P  +  +     + K  
Sbjct: 306 LDIAALETVINVELARDPEVHIHRI-GRSGRAGEKGLALSLVAPAEASRAQAIEDLQKQP 364

Query: 615 EDGF-------------------LIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD 653
              +                    IA     + + G++LG     +G+P   + +  + D
Sbjct: 365 LAWYALGQLKASPEPLLPPMSTLCIAGGRKDKVRPGDLLGALTGDAGLPGSAVGKIAIFD 424

Query: 654 --SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
             + + I R  A   L +  +   ++G+S ++ L
Sbjct: 425 FQAFVAIERGLAHQALKRLSE-GKIKGRSFKVRL 457


>gi|225435708|ref|XP_002283489.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147854540|emb|CAN78578.1| hypothetical protein VITISV_013679 [Vitis vinifera]
          Length = 612

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 60/376 (15%), Positives = 133/376 (35%), Gaps = 46/376 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
            PT  Q  AI   L           +     GSGKT      + + +  G          
Sbjct: 175 KPTPVQRHAIPISLAGRD------LMACAQTGSGKTAAFCFPIISGIMKGQASQRPPRGA 228

Query: 322 ----GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                 A+I++P   L+ Q ++  KK++  T + V +  G  P + + + LER       
Sbjct: 229 RTVYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPISQQLRDLER----GVD 284

Query: 378 IIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I++ T     D ++  ++ L ++     DE  R          Q       + M    + 
Sbjct: 285 ILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEP--QIRKIVEQMDMPPQGVR 342

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +T++ ++    +I K+         +   +  +    ++I +    + +  K   +   +
Sbjct: 343 QTMLFSATFPKEIQKLASDFL-SNYVFLAVGRVGSSTDLIVQRVEFVHDTDKRSHLMDLL 401

Query: 493 EEKKES-------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             ++ +               +   +               IHG  +  ++E  + SFK+
Sbjct: 402 HAQRANGVHGKQYLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREQALRSFKS 461

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+   + ++  +  +     +H++ GR GR  +       ++  
Sbjct: 462 GVTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI-GRTGRAGKTGLATAFFNDN 520

Query: 600 LSKNSYTRLSVLKNTE 615
            S  +     +++   
Sbjct: 521 NSSLAKALSELMQEAN 536


>gi|220929887|ref|YP_002506796.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
 gi|220000215|gb|ACL76816.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
           H10]
          Length = 565

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 138/375 (36%), Gaps = 40/375 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
               Q+ + ++ F   T  Q  +I  IL+          I Q   G+GKT    I     
Sbjct: 12  SDEVQRAIVDMGFEEATPIQSQSIPYILEG------NDLIGQAQTGTGKTCAFGIPAVEK 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAH 373
           ++      Q ++++P   LA Q  E ++   +    I +  + G  P   +  AL++   
Sbjct: 66  IDPQIDSIQVLVLSPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQIMALKK--- 122

Query: 374 GQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
            +  IIIGT     D ++   +        +L   DE    G ++ +           +L
Sbjct: 123 -RPQIIIGTPGRVMDHMRRRTIKLESLKMIVLDEADEMLNMGFREDI---------DTIL 172

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
                  +T++ ++    +I ++T+K   + P+   I         IE+  + + E  K 
Sbjct: 173 EKVPEDRQTILFSATMPKEILELTKKY-QKNPVHIKIAHKELTVPSIEQYYLEVKESAKL 231

Query: 486 YWICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +   I+           N +  V+   +  +    S   +HG M    ++ VM+ F+ 
Sbjct: 232 EVLSRLIDTNDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMNLFRK 291

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +LIAT V   GIDV D   +   +  +     +H++ GR GR           +  
Sbjct: 292 GNFDILIATDVAARGIDVDDVEAVFNYDLPNDDEYYVHRI-GRTGRAGRTGKAFTFIYGR 350

Query: 600 LSKNSYTRLSVLKNT 614
                       K+T
Sbjct: 351 EMYKLRDIQRYTKST 365


>gi|291241720|ref|XP_002740759.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Saccoglossus kowalevskii]
          Length = 1091

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 141/372 (37%), Gaps = 42/372 (11%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----- 318
           +L+ + +  PT  Q  AI  I+           I     GSGKTL  L+ M   +     
Sbjct: 438 VLKKLKYEKPTPIQAQAIPAIMSGR------NLIGIAKTGSGKTLAFLLPMFRHIMDQDP 491

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
              + G  AVIM+P   LA Q Y+  K++ +   +    + G    + +   L+R     
Sbjct: 492 LEADDGPLAVIMSPTRELAMQIYKECKRFCRALNVRGVCVYGGTGISEQIAELKR----G 547

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           +   V++DE  R           +          
Sbjct: 548 AEIIVCTPGRMIDMLTANSGRVTNLRRCTYVVLDEADRMFDMGFEPQVMRIVDNIR---- 603

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++     +  +  +    KP++  +   + +   +E+   ++ + +K   
Sbjct: 604 --PDRQTVMFSATFPRQMEALARRILN-KPLEVQVGGRSVVCSDVEQKVAIVDDDQKFLT 660

Query: 488 ICPQIEEKKESN----FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNG 540
           +   +   +E      F    E  + L +       S   +HG +   D++S +  FK G
Sbjct: 661 LLELLGVYQEQGSVLVFVEKQEGADQLLKDLMKASYSCLSLHGGIDQYDRDSAIQDFKAG 720

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             KLLIAT+V   G+DV    +++  +  +     +H++ GR GR     +      P  
Sbjct: 721 NIKLLIATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRV-GRTGRAGNKGNAFTFITPEQ 779

Query: 601 SKNSYTRLSVLK 612
            + +   +   +
Sbjct: 780 GRYAGDIIKAFE 791


>gi|254228105|ref|ZP_04921535.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262395917|ref|YP_003287770.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
 gi|151939601|gb|EDN58429.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262339511|gb|ACY53305.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
          Length = 522

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 140/373 (37%), Gaps = 41/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
           +P+  Q  AI  IL+          +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQAKAIPAILEGKDV------MAAAQTGTGKTAGFTLPILERLSNGSRVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +  Y ++  +   ++ G +    + + L +     A +++ T  
Sbjct: 77  LILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMQRLRK----GADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRK-------ILALLPKQRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +E+        KKA  +   I++     
Sbjct: 186 ATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R            A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++           +H++ GR GR  E+   I L     +   +    +++ 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRI-GRTGRAGEVGKAISLVCALEASELFAIERLIQE 364

Query: 614 TEDGFLIAEEDLK 626
                ++  ++L+
Sbjct: 365 -----VLPRKELE 372


>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
           DSM 20745]
          Length = 526

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/354 (20%), Positives = 131/354 (37%), Gaps = 34/354 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  Q  AI  +L           I Q   G+GKT    + +   ++  G   QA+++A
Sbjct: 24  EPTPIQREAIPLLLSGRD------LIAQAQTGTGKTAAFALPIIERLQPNGRRPQALVLA 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  +   +  +     V  + G  P   + +AL         +++GT     D
Sbjct: 78  PTRELAVQVAQTFHQLGRVRDTRVLAVYGGQPIERQLRALRHP----VEVVVGTPGRVMD 133

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVLT 438
            I+   L L  V        DE    G  + ++             L +AT   R   L 
Sbjct: 134 HIRRETLDLSNVSTVVIDEADEMLDMGFIEDVEWILDHVPAERQTALFSATIPDRVAALA 193

Query: 439 SLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                D +++  +P       I+   + + +  +V    +++  E   +  I  +     
Sbjct: 194 RRYLRDPARVAVEPERVTVPQIEQTYVEVVQRAKVEALTRILDMETPPSAIIFCRT---- 249

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +    +   +HG +S + ++ VM  F++G  +LLIAT V   G+D
Sbjct: 250 ----KRGVDELTQQLQSLGYAAEALHGDLSQVQRDRVMARFRSGQAELLIATDVAARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           V   + +I  +      + +H++ GR GR     + I L  P   +        
Sbjct: 306 VEGITHVINYDIPGDPESYVHRI-GRTGRAGRAGAAITLVTPRERRLLREIERA 358


>gi|95007372|emb|CAJ20592.1| DNA helicase, putative [Toxoplasma gondii RH]
          Length = 888

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 102/360 (28%), Positives = 161/360 (44%), Gaps = 21/360 (5%)

Query: 141 PHYIFH-NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSF 199
           P      NS+ V+   +  +Y   +G+   + +  I   L R     E + + L +K+  
Sbjct: 311 PDIRTQTNSEHVHVHKLMPIYPSISGVPAKILRAGIETLL-RENSFAEVVPEFLRKKRGI 369

Query: 200 PSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVE 258
             +      +H+P+  +D      AR  L Y  +L  Q+A  L  ++ + +  G      
Sbjct: 370 ERLDTTLRALHHPQTLEDV---RKARRDLFYSTMLWLQLAKKLRTREVESQFRGYASRTG 426

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
            +I Q    ++ FS T SQ  AI++I  DM     M R+LQGDVGSGKT VA +A+  + 
Sbjct: 427 EEILQAFYASLNFSLTPSQLQAIEEIRADMESPRPMRRLLQGDVGSGKTAVAAVALLLSA 486

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            AG QA ++AP   LA+QH   ++K+       V ++  ++P       +  I  G A I
Sbjct: 487 SAGHQAALLAPTAALARQHQINLQKFLGPLGFHVHLLVSDIPDKD--ATIRLINTGNAEI 544

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT-----QKATAPHVLLMTATPIPR 433
            +GTHAL QD + + +    +  E  R G +Q   +      +      VLLMTATPIPR
Sbjct: 545 TVGTHALLQDYVLFPRHEKTV--ELDRGGERQHQGIDFPGGEEGGRMADVLLMTATPIPR 602

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T VL   GD+ +SKI                        E      +   + +W+CP ++
Sbjct: 603 TQVLLKYGDLKLSKILASEIRHSRGMGRWAGEQ------EGTDERATAAFRVFWVCPLVD 656



 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 61/145 (42%), Positives = 85/145 (58%), Gaps = 5/145 (3%)

Query: 505 ERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +RF  L +      I ++HGRM   +K  V+   + GT  LL+ATTV+EVGIDV +AS+I
Sbjct: 743 QRFEELRKLLPEIRIRLLHGRMKAEEKNEVLSELRGGTVDLLVATTVVEVGIDVPNASVI 802

Query: 564 IIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHP---PLSKNSYTRLSVLKNTEDGFL 619
           +I++AE FGL QLHQLRGRVGR     S C ++  P    L + +  R + +  T DGF 
Sbjct: 803 VIDSAERFGLTQLHQLRGRVGRDARHPSFCFIILDPLKKNLDEKAMHRFAAIAATTDGFQ 862

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKF 644
           +AE D + R  G + G +Q G    
Sbjct: 863 LAETDARLRGGGTLFGRQQHGQSDL 887


>gi|255746441|ref|ZP_05420388.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
 gi|262148974|ref|ZP_06028121.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
 gi|255736195|gb|EET91593.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
 gi|262031252|gb|EEY49869.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
          Length = 643

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 29/398 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +   +   QA++MA
Sbjct: 28  SPTPIQAAAIPVLLEGRD------ALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN   + V  I G      + +AL+      AHI++GT    +
Sbjct: 82  PTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS----GAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M   P   + ++ ++     +
Sbjct: 138 DLITRDRL---HLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMV 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            +I E+   R P    +   N+    +E+   V+   +K   +   +E ++         
Sbjct: 195 KEIVERFL-RNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V +++ +   
Sbjct: 314 ITHVYNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQ 372

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +   D  +  E  +  + Q        +  E    L+E
Sbjct: 373 LPHRD--KVAESRLTKLGQELAADKEFSSLERFADLVE 408


>gi|302812625|ref|XP_002987999.1| hypothetical protein SELMODRAFT_269342 [Selaginella moellendorffii]
 gi|300144105|gb|EFJ10791.1| hypothetical protein SELMODRAFT_269342 [Selaginella moellendorffii]
          Length = 505

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 133/362 (36%), Gaps = 37/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L+          +   + GSGKTL  L+     V A        G  
Sbjct: 107 EPTAIQAQGWPMALKGRD------LVGLAETGSGKTLAYLLPAIVHVNAQPYLAPGDGPI 160

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +   K+  +++I    I G  P+  + + L+R       I+I T 
Sbjct: 161 VLVLAPTRELAVQIQQESAKFGSSSKIKSTCIYGGAPKGPQIRDLQR----GVEIVIATP 216

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       ++  +++DE  R          +K            P  +TL  +
Sbjct: 217 GRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIR------PDRQTLYWS 270

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +    D+ ++  +        T+     + +  I +   V+++ +K   +   ++E  + 
Sbjct: 271 ATWPKDVEQLANQFLHDPYKVTIGSSSLKANHSIAQHVEVVNDYEKYQKLIKLLDEFMDG 330

Query: 498 ------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   ++              IHG  S  +++ V+  FK G   ++ AT V 
Sbjct: 331 GKILIFMETKRGCDQVTKQLRMEGWPALSIHGDKSQAERDWVLSEFKTGKSPIMTATDVA 390

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D   +I  +        +H++ GR GR     +    +    +K++   +S+L
Sbjct: 391 ARGLDVKDIRYVINYDFPGSCEDYVHRI-GRTGRAGAKGTAYTFFTVSNAKHARELVSIL 449

Query: 612 KN 613
             
Sbjct: 450 SE 451


>gi|167912446|ref|ZP_02499537.1| putative ATP-dependent DNA helicase [Burkholderia pseudomallei 112]
          Length = 295

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 103/244 (42%), Gaps = 18/244 (7%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   S 
Sbjct: 55  KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-SE 107

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 108 IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 166

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 167 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 225

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 226 LDVPPLADAVRMLHHPGVGADEAALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 285

Query: 253 IPIN 256
             + 
Sbjct: 286 PAMP 289


>gi|229526685|ref|ZP_04416089.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
 gi|229336843|gb|EEO01861.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
          Length = 651

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 29/398 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +   +   QA++MA
Sbjct: 38  SPTPIQAAAIPVLLEGRD------ALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMA 91

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN   + V  I G      + +AL+      AHI++GT    +
Sbjct: 92  PTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS----GAHIVVGTPGRVK 147

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M   P   + ++ ++     +
Sbjct: 148 DLITRDRL---HLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMV 204

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            +I E+   R P    +   N+    +E+   V+   +K   +   +E ++         
Sbjct: 205 KEIVERFL-RDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 263

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 264 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 323

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V +++ +   
Sbjct: 324 ITHVYNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQ 382

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +   D  +  E  +  + Q        +  E    L+E
Sbjct: 383 LPHRD--KVAESRLTKLGQELAADKEFSSLERFADLVE 418


>gi|168021119|ref|XP_001763089.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685572|gb|EDQ71966.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 514

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 135/362 (37%), Gaps = 37/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L+          I   + GSGKTL  L+     V A        G  
Sbjct: 116 EPTAIQAQGWPMALKGRD------LIGLAETGSGKTLAYLLPAIVHVNAQPYLAPGDGPI 169

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +   K+  +++I    I G  P+  + + L++       ++I T 
Sbjct: 170 VLVLAPTRELAVQIQQESTKFGASSKIKNTCIYGGAPKGPQIRDLQK----GVEVVIATP 225

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       ++  +++DE  R          +K  +         P  +TL  +
Sbjct: 226 GRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR------PDRQTLYWS 279

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +    ++  +  +        T+     + +  I+++  V+SE +K   +   +EE  + 
Sbjct: 280 ATWPKEVEFLARQFLNDPYKVTIGSSDLKANHAIDQVVEVVSEHEKYPKLIKLLEEIMDG 339

Query: 498 ------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   ++              IHG  S  +++ V+  FK G   ++ AT V 
Sbjct: 340 SRLLVFMETKRGCDQVTRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 399

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D   +I  +        +H++ GR GR     +    +    +K++   +S+L
Sbjct: 400 ARGLDVKDIKCVINYDFPGSCEDYVHRI-GRTGRAGAKGAAYTFFTAANAKHAKELVSIL 458

Query: 612 KN 613
             
Sbjct: 459 VE 460


>gi|296184919|ref|ZP_06853330.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
 gi|296050701|gb|EFG90124.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
          Length = 374

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 78/360 (21%), Positives = 140/360 (38%), Gaps = 36/360 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N+  K+ Q I       P++ Q  AI  IL      N M  I Q   G+GKTL     +
Sbjct: 9   LNLHKKVLQAIDAMGFEEPSQIQAEAIPVIL----SGNDM--IGQAQTGTGKTLAFGAPV 62

Query: 315 AAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            + +E+  +  A+++ P   LA Q  + + +  +  +  +  + G  P   + K+L R  
Sbjct: 63  LSQIESSDKISALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQIKSLRR-- 120

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVL 424
                +++GT     D I+   L L  V        DE    G    +           +
Sbjct: 121 --GVDVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDI---------EEI 169

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           + +     +TL+ ++    +I+K+  K    +     I+  +   E I++    +    +
Sbjct: 170 IKSLNKDRQTLLFSATMPKEIAKLASKYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDR 229

Query: 485 AYWICPQI---EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
              +C  +   E      F       + L E   +    +  +HG M    + + +  FK
Sbjct: 230 FESLCRILDIDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFK 289

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            GT   L+AT V   GIDV D S +I  +      + +H++ GR GR  +      L  P
Sbjct: 290 EGTLDFLVATDVAARGIDVDDVSHVINYDLPQDMESYVHRI-GRTGRANKEGIAYSLVTP 348


>gi|268318827|ref|YP_003292483.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
           FI9785]
 gi|262397202|emb|CAX66216.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
           FI9785]
          Length = 484

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 74/348 (21%), Positives = 134/348 (38%), Gaps = 39/348 (11%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE  I  +L+          I Q   G+GKT    + +   ++      QA+
Sbjct: 20  GFEEATPIQEKTIPLVLEGKDV------IGQAQTGTGKTAAFGLPILQNLDKQHDSIQAI 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E + +  ++ +  V+++ G      + +AL++       I++GT   
Sbjct: 74  IIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQ----TPAILVGTPGR 129

Query: 386 FQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D ++           ++L   DE    G  Q +           +L  A+   +TL+ 
Sbjct: 130 LLDHLKRGTIDISKIKTIVLDEADEMLDMGFIQDI---------ESILKYASSKHQTLLF 180

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I +I EK     P    I        +I++  V   E +K   +C  I+ +  
Sbjct: 181 SATMPKPILRIGEKFMN-DPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLIDVQNP 239

Query: 497 --ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L     +     A IHG +S   + SV+  F+ G   +L+AT V 
Sbjct: 240 DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVA 299

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+   S +   +      + +H++ GR GR  +    +    P 
Sbjct: 300 ARGLDISGVSHVYNYDIPQDPDSYVHRI-GRTGRAGQNGMSVTFVTPN 346


>gi|167630436|ref|YP_001680935.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
 gi|167593176|gb|ABZ84924.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
          Length = 540

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 129/341 (37%), Gaps = 34/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGG-QAVIMA 328
            P+  Q  AI  I+Q          I Q   G+GKT    I MA  +    G  QA+++ 
Sbjct: 40  EPSPIQAKAIPVIMQGKD------LIGQAQTGTGKTATFGIPMAETLNPRDGRVQALVLC 93

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I K  +   +    + G      + +AL         ++IGT     D
Sbjct: 94  PTRELAIQVAQEISKIGRQNDLKALPVYGGQSIDRQIRALRY----GVQVVIGTPGRILD 149

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRTLV 436
            +    L L  V        DE    G  + +   L +       LL +AT     + L 
Sbjct: 150 HLSRKTLRLNNVRMVVLDEADEMLDMGFVEDIEAILKETPEERQTLLFSATMPGPIQQLA 209

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              + + +   I+        I+ V        +V    +++  E   +  I  + +   
Sbjct: 210 RQYMKEPEFVTISRDKLTVPLIEQVYYECKESQKVDALCRILDMEEIGSSIIFCRTK--- 266

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               R V E   +L      +  + HG ++   ++ VM  F++G  +LLIAT V   G+D
Sbjct: 267 ----RGVDELVAALETRGYFAEGL-HGDLTQAQRDRVMKKFRDGKAELLIATDVAARGLD 321

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V + + +I  +      + +H++ GR GR       I L +
Sbjct: 322 VENVTHVINYDIPQDPESYVHRI-GRTGRAGRKGIAITLIN 361


>gi|189499774|ref|YP_001959244.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189495215|gb|ACE03763.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
           BS1]
          Length = 591

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 134/365 (36%), Gaps = 35/365 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  Q   I  IL+          + Q   G+GKT    + + + ++   A  Q +++ 
Sbjct: 34  TPTPVQLQTIPIILKG------SDVLGQAQTGTGKTAAFALPLLSTIDLSNASPQVLVLT 87

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  ++Y    +    + I G    + + + L R      H+++GT     
Sbjct: 88  PTRELALQVAEAFQRYAACMEDFHVLPIYGGQDYSGQLRRLRR----GVHVVVGTPGRVM 143

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVL 437
           D I+           L+L   DE  R G    ++    +      V L +AT       +
Sbjct: 144 DHIRRQTLNLDGLKTLVLDEADEMLRMGFVDDVEWILEKTPATRQVALFSATMPSEIRRI 203

Query: 438 TSLGDIDISK--ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           T     D ++  I  K +  +      +P++   ++    +++  E      I  + +  
Sbjct: 204 TRKYLRDFTEVAIKSKSSTVESTTQRFLPVSGHHKLDALTRILEIEHYDGVIIFVRTKT- 262

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                   VE    L     +S A+ +G M    +E  +  FK     +LIAT V   G+
Sbjct: 263 ------QTVELSEKLRARGYASAAL-NGDMMQNHREKTVGQFKKSVYNILIATDVAARGL 315

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S +I  +      + +H++ GR GR       IL   P       T    ++   
Sbjct: 316 DVERISHVINYDIPTDTESYVHRI-GRTGRAGRSGEAILFVTPREMSMLRTIERAIRKRI 374

Query: 616 DGFLI 620
           D   +
Sbjct: 375 DRMEL 379


>gi|15896262|ref|NP_349611.1| ATP-dependent RNA [Clostridium acetobutylicum ATCC 824]
 gi|15026068|gb|AAK80951.1|AE007798_3 ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis
           ortholog [Clostridium acetobutylicum ATCC 824]
 gi|325510417|gb|ADZ22053.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
           acetobutylicum EA 2018]
          Length = 528

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 130/346 (37%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-----GGQAVI 326
            P+K Q  AI  ++           I Q   G+GKT+     + + ++      G QA+I
Sbjct: 26  EPSKIQAEAIPVVIDGYD------MIGQAQTGTGKTVAFGAPIISKIKDIDEKEGVQAII 79

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  + + + ++  ++ V  I G      + +A++R       +I+ T    
Sbjct: 80  LTPTRELAIQITDELTRLSKYARVRVLPIYGGQSIERQMRAIKR----GVDVIVATPGRI 135

Query: 387 QDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            D I+           L+L   DE    G    ++   K  +            +T++ +
Sbjct: 136 MDHIKRKTVKLDKVKFLVLDEADEMLDMGFIDDIEGIIKNISGD---------RQTMLFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +     I K+      ++     II  +   E I++    +    K   +C  I+ ++  
Sbjct: 187 ATMPAPIKKLASNYMKKEVKHIAIIKNSLTVERIQQFYFEVKNKDKFEALCRIIDVEEPE 246

Query: 498 -----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  V+      +    ++  +HG MS   + + +  FK      L+AT V  
Sbjct: 247 TTIIFCRTKRGVDELVESMQFRGYNVEGMHGDMSQNQRINTLKKFKENNIDFLVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            GIDV + S +I  +      + +H++ GR GR         L  P
Sbjct: 307 RGIDVHNVSHVINYDIPQDMESYVHRI-GRTGRANAEGIAYSLVTP 351


>gi|218889195|ref|YP_002438059.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa LESB58]
 gi|218769418|emb|CAW25178.1| RNA helicase DbpA [Pseudomonas aeruginosa LESB58]
          Length = 458

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 83/454 (18%), Positives = 173/454 (38%), Gaps = 49/454 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ +   T  Q  ++  ILQ          I Q   GSGKT    +A+ + +     G
Sbjct: 19  LDSLGYREMTPIQAQSLPLILQGHD------LIAQAKTGSGKTAAFGLALLSPLNPRYFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    I V  + G +P   +  +LE      AH+++
Sbjct: 73  CQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEH----GAHVVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L+L  ++        + L +    +   ++        +TL+ ++ 
Sbjct: 129 GTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPER-RQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I K+ +        + V +     D  IE+    +   ++   +   ++  +    
Sbjct: 188 YPDGIEKLAKTFMRDP--RQVRVESLHADSQIEQRFFEIDPKQRMDAVVRLLQHFRPQSS 245

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R   +      +    S   +HG +   +++ V+  F N +C +L+AT V   G
Sbjct: 246 VAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+     +I           +H++ GR GR  E    + L  P  +  +     + K  
Sbjct: 306 LDIAALETVINVELARDPEVHIHRI-GRSGRAGEKGLALSLVAPAEASRAQAIEDLQKQP 364

Query: 615 EDGF-------------------LIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD 653
              +                    IA     + + G++LG     +G+P   + +  + D
Sbjct: 365 LAWYALGQLKASPEPLLPPMSTLCIAGGRKDKVRPGDLLGALTGDAGLPGSAVGKIAIFD 424

Query: 654 --SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
             + + I R  A   L +  +   ++G+S ++ L
Sbjct: 425 FQAFVAIERGLAHQALKRLSE-GKIKGRSFKVRL 457


>gi|187935259|ref|YP_001885538.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723412|gb|ACD24633.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 480

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 145/379 (38%), Gaps = 46/379 (12%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           + N+ + +P++ QE AI +IL++         +++   GSGKT    I +   +   E  
Sbjct: 18  IDNLGYKTPSEVQEKAIPEILRNKD------LVVKSQTGSGKTASFGIPLCEKIDWDENK 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++AP   LA Q  E I    +  +I    I G      + + L++    + HI++G
Sbjct: 72  PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ----KTHIVVG 127

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I    L        ++   DE    G  +Q   + ++     V L+ +  IP
Sbjct: 128 TPGRVLDHIDRGSLDVSKTNYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTLLFSATIP 187

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP-Q 491
             +   +L D  +++         PI   I   N   + +      +   +K   +    
Sbjct: 188 EEI--KNLCDKHMNR---------PIDIAIKSQNLTSDNVSHYAYHVGYNQKLDLLNNIL 236

Query: 492 IEEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           I E  E        +  V+  +        S   IHG M   D+   M+ F+ G  ++L+
Sbjct: 237 ISEMPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILV 296

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT +   GID+   + +I  +      A +H++ GR GR       +        +    
Sbjct: 297 ATDIASRGIDIEGITHVINYDIPVEKEAYVHRI-GRTGRAGAKGVALTFCKDSGDRYLNE 355

Query: 607 RLSVLKNTEDGFLIAEEDL 625
               +     GF +  ++L
Sbjct: 356 IEEYI-----GFKLEVKNL 369


>gi|294055756|ref|YP_003549414.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615089|gb|ADE55244.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 406

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 62/339 (18%), Positives = 128/339 (37%), Gaps = 23/339 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-----GQAVI 326
            PT  Q  AI  I+           I     G+GKT    +     +         + ++
Sbjct: 24  EPTPIQAGAIPHIIDGRDV------IGSAQTGTGKTAAFALPALHRLGKHQKGAAPRCLV 77

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  +KY ++ Q+   +I G +    +R+ LE      A ++I T    
Sbjct: 78  LGPTRELAAQVKEQFEKYGKDAQLKCALIHGGVGYGRQRQELEA----GADVVIATPGRL 133

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            D +Q     L  VD      V + L +        ++   +    +TL+ ++    +I 
Sbjct: 134 IDHVQQRTADLRNVDLLILDEVDRMLDMGFIDDVKKIIKFCSKQGRQTLLFSATVSEEIK 193

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNF 500
           ++  + + + P++  I       E ++     +   +K   +   IE  +          
Sbjct: 194 RLIAR-SLKDPVEVAIAVKITPAETVKHEVYPVGAMQKFDLLVALIESMEVDSMIIFCRM 252

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           +   +R     +     +A +H  ++   +   +  FK+G  K+L+AT +   G+D+ + 
Sbjct: 253 KIGADRITRWLQQHKYKVAAMHADLNQKARNRALQDFKDGNIKILVATDIASRGLDIANV 312

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           + +I  +        +H++ GR GR +       +  P 
Sbjct: 313 THVINYDVPEHPEDYVHRI-GRTGRAQREGDAATILAPD 350


>gi|218676896|ref|YP_002395715.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218325164|emb|CAV27059.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 689

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 90/437 (20%), Positives = 169/437 (38%), Gaps = 47/437 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +   +   QA+IMA
Sbjct: 56  SPTPIQAAAIPLLLEGRD------ALGKAQTGTGKTAAFSLPLLNKINLNQHKPQAIIMA 109

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   ++   + V  I G      + +AL R     AHI++GT    +
Sbjct: 110 PTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRALSR----GAHIVVGTPGRVK 165

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDI 445
           D +   +L    +DE H F + +  ++ +      V  +L  A    + ++ ++     +
Sbjct: 166 DLLTRDRL---HLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPMV 222

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
             I ++   R P K  +   N   + + +   V+   +K   +   +E ++         
Sbjct: 223 KTIVDRYL-RNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETDASIVFVR 281

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 282 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 341

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V K+  +   
Sbjct: 342 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSQMEEIQ 400

Query: 620 IAEED------LKQRKEGEILGIKQS-------GMPKFLIAQPELHDSLLEI---ARKDA 663
           + + D      + +    E+   K+S       G+   L    E+  + L      R+  
Sbjct: 401 LPQRDEVAAARVAKLGA-ELETEKESKALENFAGLISTLQESLEVDAATLAAMLLKRQQG 459

Query: 664 KH---ILTQDPDLTSVR 677
           K     + +DP + ++ 
Sbjct: 460 KSPLFYVGEDPMIAAIE 476


>gi|115683622|ref|XP_784902.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Strongylocentrotus purpuratus]
 gi|115971375|ref|XP_001190564.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Strongylocentrotus purpuratus]
          Length = 869

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 165/442 (37%), Gaps = 47/442 (10%)

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI-----GIPINVEGKIAQ 263
           I  P   KDF    P   RL  +E+   +  L  ++ + K         +   V  ++  
Sbjct: 366 IDYPPYRKDFYVEVPELARLTPEEVDKRRSDLEGVKVRGKGCPKPVDSWVQCGVSMRVLT 425

Query: 264 KILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----- 318
            + +N    PT  Q  AI  I+           I     GSGKT+  L+ M   +     
Sbjct: 426 ILKKNNYEKPTPIQCQAIPAIMSGRD------LIGIAKTGSGKTMAFLLPMFRHIMDQDP 479

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
              E G   +IM P   LA Q ++  KK+T++  +    + G    + +   L+R     
Sbjct: 480 LEAEDGPITLIMTPTRELAMQIFKECKKFTKSMGLRAVCVYGGTGISEQIAELKR----G 535

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           +   +++DE  R           K          
Sbjct: 536 AEIIVCTPGRMIDMLGANNGRVTNLRRCTYLVLDEADRMFDMGFEPQVMKIVENIR---- 591

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++     +  +  K    KPI+  +   + +   + +  ++L E +K   
Sbjct: 592 --PDRQTVLFSATFPRQMEALARK-ILTKPIEVQVGGRSVVCSDVTQHAMILEEDQKFLK 648

Query: 488 ICPQIEEKKESNFRSVVERFNS---LHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGT 541
           +   +    E      VE+  S   L +    +      +HG +   D++S++  FK   
Sbjct: 649 LLELLGYYDEGQILVFVEKQESADLLLKDLMKASYPCLALHGGIDQYDRDSIIQDFKAAN 708

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            K+L+AT+V   G+DV +  ++I  +  +     +H++ GR GR            P  +
Sbjct: 709 VKILVATSVAARGLDVKNLVLVINYDCPNHYEDYVHRV-GRTGRAGNKGFSYTFLMPEQA 767

Query: 602 KNSYTRLSVLKNTEDGFLIAEE 623
           K +   +   +    G  + EE
Sbjct: 768 KYAGDVIKAFE--LSGAKVPEE 787


>gi|288556913|ref|YP_003428848.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288548073|gb|ADC51956.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 539

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 145/371 (39%), Gaps = 38/371 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  ++ ++++ F  P+  QE AI  IL+          I Q   G+GKT    I +   
Sbjct: 10  SEPIKRAIKDMGFEEPSPIQEKAIPVILEG------GDVIGQAQTGTGKTAAFGIPVIDK 63

Query: 318 V--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           V  E   QA+I+ P   LA Q    ++K + + +I    I G     H+ KAL++     
Sbjct: 64  VTEERYVQALILTPTRELAIQVSGELQKLSAHKRIRTMPIYGGQSIGHQIKALKQ----G 119

Query: 376 AHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             ++IGT     D I+   L        +L   DE    G    ++   +          
Sbjct: 120 VQVVIGTPGRILDHIRRKTLQLNKVHTIVLDEADEMLDMGFVDDIESILREVKG------ 173

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                +TL+ ++     I K++ +        T+         + +    VL    K   
Sbjct: 174 ---ARQTLLFSATMPPAIKKLSRRYMTTPKTVTINKGEVTAPSIDQLYYKVLERN-KIDS 229

Query: 488 ICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGT 541
           +C  I+ ++      F    +    L E   +       +HG ++   +++VM  F++ +
Sbjct: 230 LCRIIDSEEVDLGILFCRTKKGVAELTEALQARGYLADGLHGDLTQSQRDAVMKKFRDSS 289

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            + LIAT V   GIDV + + +I  +      + +H++ GR GR       + L  P   
Sbjct: 290 IEFLIATDVAARGIDVDNVTHVINYDIPQDPESYVHRI-GRTGRAGRKGLALTLVTPREM 348

Query: 602 KNSYTRLSVLK 612
           K+  +    +K
Sbjct: 349 KHLRSIEQEIK 359


>gi|195125432|ref|XP_002007182.1| GI12524 [Drosophila mojavensis]
 gi|193918791|gb|EDW17658.1| GI12524 [Drosophila mojavensis]
          Length = 602

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 152/430 (35%), Gaps = 44/430 (10%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN---VEGKIAQKILRNI 269
              K+F    P     + +E+ A +    +  +          +          +I R  
Sbjct: 69  PFQKNFYQEHPKTRNRSPEEVAAYRSQHQITVRGMAPNPIRSFDETCFPDYCMNEIRRQR 128

Query: 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AG 321
              PT  Q  A   +L      N ++ I     GSGKTL  ++     +          G
Sbjct: 129 YIEPTPIQAQAWPIVL----SGNNLVGI--AKTGSGKTLAFILPAIVHINGQPTLKRGDG 182

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+++AP   LAQQ       +  ++ +    I G  P++ +   L+        I+I 
Sbjct: 183 PIALVVAPTRELAQQIQTVANDFGSSSYVRNTCIFGGAPRSKQASDLQN----GVEIVIA 238

Query: 382 THALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D +Q       +   +++DE  R          +K      +L    P  + L+
Sbjct: 239 TPGRLLDFLQSGTTNLRRCTYLVLDEADRMLDMGFEPQIRK------ILSQIRPDRQILM 292

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    ++ ++ E   G      +       +  I +   V +E +K   +   +    
Sbjct: 293 WSATWPKEVRQLAEDFLGNYIQINIGSLELSANHNIRQYVDVCAEHEKGSKLKDLLSHIY 352

Query: 497 ESN-----------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           + +            +  V+        F   +  IHG  S +D+++V++ F++G   +L
Sbjct: 353 DQSGMPGKIIIFVATKKKVDELARFINAFGVGVGSIHGDKSQMDRDNVLNDFRSGRANIL 412

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+DV     +I  +        +H++ GR GR     +    +    +K + 
Sbjct: 413 VATDVAARGLDVDGIKYVINFDFPQSSEDYIHRI-GRTGRKHSTGTSYAFFTRKNAKCAR 471

Query: 606 TRLSVLKNTE 615
             + +L+   
Sbjct: 472 ALIEILREAN 481


>gi|325983359|ref|YP_004295761.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325532878|gb|ADZ27599.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 457

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 145/372 (38%), Gaps = 43/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +PT  Q+ A+ +++           +     G+GKT   ++     +         G + 
Sbjct: 23  TPTPIQQQAVPELIAGHDV------MASAQTGTGKTAAFMLPALHTLATPAQIRSRGPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  E  KKY +    I V  I G MP   + K L +       I++ T 
Sbjct: 77  LVLTPTRELALQVSEAAKKYGKYLPRINVVSILGGMPYPLQNKLLSQP----VDILVATP 132

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D IQ     + +L ++++DE  R      ++  +        +  ATP   +TL+ 
Sbjct: 133 GRLIDHIQRGRIDFKRLQMLVLDEADRMLDMGFIEDVET-------IAAATPATRQTLLF 185

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE--- 494
           ++  D  I ++  K         V  P +++D + +RL        K   +   + +   
Sbjct: 186 SATLDNAIDRVAAKLLKTPQRIQVSSPKSKLDNIEQRLHYADDMSHKNRLLDHVLRDETL 245

Query: 495 KKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           K+   F +     +SL +   +   + A +HG M+  ++   +   +NG  ++L+AT V 
Sbjct: 246 KQAIVFTATKRDADSLADTLYAQGYAAAALHGDMNQRERNRTLTRLRNGGLRVLVATDVA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV D + +I  +   F    +H++ GR GR       +       S +        
Sbjct: 306 ARGIDVADITHVINFDLPKFAEDYVHRI-GRTGRAGAAGIAVSFASVKDSMHLTKIERY- 363

Query: 612 KNTEDGFLIAEE 623
                G  IA  
Sbjct: 364 ----TGQRIASH 371


>gi|170091070|ref|XP_001876757.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648250|gb|EDR12493.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 661

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 87/475 (18%), Positives = 168/475 (35%), Gaps = 65/475 (13%)

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI--LRNIPFS-PTKSQESAIKDIL 285
              E L  ++  + +R     +     +  G  A  +  ++ + ++ PT  Q  AI  I+
Sbjct: 56  EEAEFLRLELDSIKIRGIDCPKPVTKWSHFGLPANCLDVIKRLNYTAPTSIQAQAIPAIM 115

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQH 337
                      I     GSGKT+  L+ +   ++         G  AV+M P   LA Q 
Sbjct: 116 SGRDV------IGVAKTGSGKTIAFLLPLFRHIKDQRSLEQMEGPIAVVMTPTRELAVQI 169

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
           ++  K + +   +      G  P   +   L++     A II+ T     D +       
Sbjct: 170 HKECKAFLKVLNLRAVCAYGGSPIKDQIAELKK----GAEIIVCTPGRMIDLLTANSGRV 225

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
               ++  V++DE  R           K            P  +T++ ++     +  + 
Sbjct: 226 TNLKRVTYVVLDEADRMFDMGFEPQVMKIINNIR------PDRQTVLFSATFPKQMDSLA 279

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV------ 503
            K    KP++  +   + +   IE++  V  E  K   +   + +    +          
Sbjct: 280 RK-ILHKPLEITVGGRSVVAAEIEQIVEVRPEDTKFNRLLEILGQMYNEDPECRTLVFVD 338

Query: 504 -VERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  ++L             +HG    +D++S +  FK+G   ++IAT+V   G+DV  
Sbjct: 339 RQEAADNLLRELMRKGYLCMSLHGGKDQVDRDSTIADFKSGVVPIVIATSVAARGLDVKQ 398

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
             ++I  +A +     +H+  GR GR     +C+    P   + S      +K +     
Sbjct: 399 LKLVINYDAPNHMEDYVHR-AGRTGRAGNKGTCVTFITPEQERYSVDIYRAVKASN---A 454

Query: 620 IAEEDLKQRKEGEIL----GIKQS-----GMPKFLIAQPELHDSLLEIARKDAKH 665
              +DL++   G +     G  Q+     G         E        AR+ A+ 
Sbjct: 455 TIPKDLEELANGFLDKLKTGKAQAAGSGFGGKGLDRLDKERD------AREKAER 503


>gi|10039327|dbj|BAB13306.1| PL10-related protein CnPL10 [Hydra vulgaris]
          Length = 628

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 135/374 (36%), Gaps = 46/374 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------E 319
            PT  Q+++I  I        +   +     GSGKT   L+ + + +             
Sbjct: 193 KPTPVQKNSIPIIKA------KRDLMACAQTGSGKTAAFLVPILSRIFEEGPFENPSNVR 246

Query: 320 AGGQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
            GG+      A+++AP   LA Q Y+  +K+   + I   ++ G    + + + ++R   
Sbjct: 247 QGGKKKQYPIALVLAPTRELASQIYDESRKFVYRSCIRPCVVYGGADVSTQMRDIDR--- 303

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+++ T     D IQ  K+ L  +     DE  R          Q         M  
Sbjct: 304 -GCHLLVATPGRLVDMIQRGKVGLECIKFLVLDEADRMLDMGFEP--QIREIVEKCDMPR 360

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++    +I  +         I   +  +    E I +  V + E  K  ++
Sbjct: 361 TGERQTLMFSATFPKEIQMLARDFLD-NYIFLAVGRVGSTSENITQKVVWVEEHDKREFL 419

Query: 489 CPQIE----EKKESNFRSVVERFNSLHEHFT-----SSIAIIHGRMSDIDKESVMDSFKN 539
              +     +     F       ++L +             IHG     ++E  + SF+ 
Sbjct: 420 LDLLNASGPDSLTLVFVETKRGADALEQFLFRCPENYHATSIHGDRHQREREQALASFRV 479

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GT  +L+AT V   G+D+ +   +I  +        +H++ GR GR       I  ++  
Sbjct: 480 GTTPILVATAVAAKGLDIPNVKHVINFDMPSDIEEYVHRI-GRTGRAGHTGLAISFFNDK 538

Query: 600 LSKNSYTRLSVLKN 613
               +   + +L  
Sbjct: 539 NRNVARDLMDILAE 552


>gi|119946865|ref|YP_944545.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119865469|gb|ABM04946.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 429

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 133/360 (36%), Gaps = 36/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
            P+  Q  AI  IL+          +     G+GKT    + +   +E G        +A
Sbjct: 23  EPSPIQAQAIPAILEGKDV------MAAAQTGTGKTAGFTLPLLTLLEKGNRPKPNQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q +  +  Y +N  +   ++ G +    + + L +       +++ T  
Sbjct: 77  LVLTPTRELAAQVHASVATYGKNMPLRSAVVFGGVKINPQMQILRQ----GVDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++ + +L ++I+DE  R      +   +       +L       + L+ ++
Sbjct: 133 RLIDLYNQNAVSFKQLEVLILDEADRMLDMGFIHDIK------RILAVLPKQRQNLLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               DI ++  K     P++  + P N   E + +    + + KK+  +   I++     
Sbjct: 187 TFSPDIRRLA-KGLVNNPVEISVSPRNTTAENVTQTVYEVDKTKKSIVLSTLIKQNDWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E    + A IHG  S   +   +  FK G  + L+AT +   
Sbjct: 246 VLVFVKTKHGANRLVKSLEGRGITAAAIHGNKSQAARTRALAGFKEGQVRALVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++  +  H     +H++ GR GR       + L      K       ++K 
Sbjct: 306 GIDIDQLPQVVNFDLPHVSEDYVHRI-GRTGRAGNEGQALSLVCNEEFKLLKDIEKLIKK 364


>gi|74006746|ref|XP_861599.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 13 [Canis familiaris]
          Length = 656

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 144/373 (38%), Gaps = 51/373 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEENGRYGR 256

Query: 325 -------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                  +++AP   LA Q YE  +K++  +++   ++ G      + + LER      H
Sbjct: 257 RKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER----GCH 312

Query: 378 IIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP-----HV 423
           +++ T     D ++  K        L+L   D     G + Q  ++ ++ T P     H 
Sbjct: 313 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 372

Query: 424 LLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    L  +L+
Sbjct: 373 MMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSFLLDLLN 430

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
              K       +E KK        +       H   +   IHG  S  D+E  +  F++G
Sbjct: 431 ATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 484

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++   
Sbjct: 485 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATSFFNERN 543

Query: 601 SKNSYTRLSVLKN 613
              +   L +L  
Sbjct: 544 INITKDLLDLLVE 556


>gi|322799398|gb|EFZ20748.1| hypothetical protein SINV_08125 [Solenopsis invicta]
          Length = 764

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 76/401 (18%), Positives = 139/401 (34%), Gaps = 46/401 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              +  + + I +N    PT  Q  A+   L           I     GSGKT   +  M
Sbjct: 259 FGFDDALIKTIRKNEYTQPTPIQAQAVPAALSGRD------IIGIAKTGSGKTAAFIWPM 312

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   +I+AP   L+QQ Y+  KK+ +   I V    G   +  + K
Sbjct: 313 LVHIMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSK 372

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK- 417
           ALE      A I++ T     D ++           L+L   D     G + +++     
Sbjct: 373 ALES----GAEIVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNH 428

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG--RKPIKTVII-----PINRID 469
                  LL +AT   +   L      D  +I +   G     +   +I     P  + +
Sbjct: 429 VRPDRQTLLFSATFKKKVEKLARDILTDPIRIVQGDVGEANTDVTQHVIMFHNNPSGKWN 488

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            +++ L   LS G    ++            +   E   +  +     + ++HG M  ++
Sbjct: 489 WLLQNLVEFLSAGSLLIFV----------TKKLNAEELANNLKLKEFDVLLLHGDMDQLE 538

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +  V+ +FK      L+AT V   G+D+     ++  +         H++ GR GR  E 
Sbjct: 539 RNKVITAFKKKDVSTLVATDVAARGLDIPHIKTVVNYDVARDIDTHTHRI-GRTGRAGEK 597

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
            +   L      + +   +  L+        +  DL  +  
Sbjct: 598 GTAFTLVTEKDKEFAGHLVRNLEGANQEVPKSLMDLAMQSA 638


>gi|313906550|ref|ZP_07839880.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
 gi|313468619|gb|EFR63991.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
          Length = 524

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 131/349 (37%), Gaps = 23/349 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAP 329
           T  QE  +  IL+          I     G+GKT    + +   ++ G     +++++ P
Sbjct: 25  TPIQEKTMPVILEGRD------LIACAQTGTGKTAAFALPILEKLDNGEVRKLRSLVLTP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q +E  KKY +   +    I G   Q  + +AL R       I++ T     D 
Sbjct: 79  TRELAVQIFENFKKYGRYLPLRAVCIYGGAKQKPQMEALRR----GCDILVATLGRLMDY 134

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +    + L  + E        R+           +  +     +TL+ ++    +I ++ 
Sbjct: 135 MNLGLVSLKGI-EIFVLDEADRMLDMGFINDVRKIAGSMNTDRQTLMFSATMPKEIEQLG 193

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------RSV 503
            +   R P    + P +   + +++    +    K   +   +++++ +        +  
Sbjct: 194 -RELLRDPADVRVAPQSTAADTVDQKICFVGHSDKLKVLAEILKQEEVTRTIIFTRTKHG 252

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +R          +   IHG  +   ++S ++ +K G   +L+AT V   G+D+ + S +
Sbjct: 253 ADRVARNLTRSGIAAKAIHGDKTQGQRQSTLEGYKAGHFHVLVATDVASRGLDIPEVSHV 312

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           I  N      A +H++ GR GR  E    I L              +LK
Sbjct: 313 INFNLPQEPEAYIHRI-GRTGRAGESGIAITLCEEDEMDLLKEVEKILK 360


>gi|254566967|ref|XP_002490594.1| Nucleolar protein required for maturation of 18S rRNA [Pichia
           pastoris GS115]
 gi|238030390|emb|CAY68313.1| Nucleolar protein required for maturation of 18S rRNA [Pichia
           pastoris GS115]
 gi|328350981|emb|CCA37381.1| DEAD-box protein, putative RNA helicase similar to S. cerevisiae
           FAL1 (YDR021W) involved in rRNA processing [Pichia
           pastoris CBS 7435]
          Length = 396

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 133/344 (38%), Gaps = 35/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P+  Q  AI  IL           I Q   G+GKT    I M   V+      QA++++
Sbjct: 45  APSAIQSRAIMQILTGKDT------IAQAQSGTGKTATFSIGMLNVVDTKKKDTQAIVLS 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I+       I      G        K L++      HI+ GT     D
Sbjct: 99  PTRELAVQINNVIQNLGDYMNIHTYACIGGTSVGEDLKKLQKGQ----HIVSGTPGRVCD 154

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G Q+++    K    +  V++++AT     LV+T
Sbjct: 155 MIKRRNLNVRNVKMLVLDEADELMTKGFQEQIYDIYKTLPPSTQVVVVSATLTKEVLVMT 214

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    D  KI         +K   + +  I +   + +    +      +   +   +  
Sbjct: 215 NKFMNDPVKIL--------VKRDEVSLEGIRQFYIQCEKEEWKFDTLCDLYDSLTVTQAV 266

Query: 499 NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F +  ++ + L EH   +   +  +HG M   D++ +M+ F+ G  ++LI+T V   GI
Sbjct: 267 IFCNTKKKVDWLTEHLRKANFTVVSMHGDMKQEDRDRIMNEFRLGNSRVLISTDVWARGI 326

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV   S++I  +        +H++ GR GR       + L    
Sbjct: 327 DVQQVSLVINYDIPFAKENYIHRI-GRSGRFGRKGMAVNLVTEE 369


>gi|254500508|ref|ZP_05112659.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
 gi|222436579|gb|EEE43258.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
          Length = 480

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 71/365 (19%), Positives = 141/365 (38%), Gaps = 42/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  +L+      R   +     G+GKT    + M   +E G       + +
Sbjct: 23  DPTAIQAGAIPQVLE------RRDVLGIAQTGTGKTASFTLPMLTLLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  ++Y  N ++ V ++ G +  A + K L+R       ++I T   
Sbjct: 77  ILEPTRELAAQVQENFERYGTNHKLNVALLIGGVSFAEQDKKLDR----GTDVLIATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     +++DE  R      +   ++       +    P   +TL  ++
Sbjct: 133 LLDHFERGKLLLQGVEILVIDEADRMLDMGFIPDIER-------ICKLIPFTRQTLFFSA 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               +I ++TE          V    +  + V ++LK    +         ++ E  E  
Sbjct: 186 TMPPEIQRLTETFLQNPARIEVAPTSSTAENVTQQLKAAGGKDYDKRVALRELLEGAEDL 245

Query: 498 ------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N +  +       E    ++  +HG M    +  ++++F+ G  KLL+A+ V 
Sbjct: 246 QNAIVFCNRKRDISTLFRSLERHEYNVGALHGDMDQRTRMMMLENFRKGAIKLLVASDVA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ + S +   +        +H++ GR GR     +   L     +++    L  +
Sbjct: 306 ARGLDIPEVSHVFNYDVPINAEDYVHRI-GRTGRAGRSGTAYTLV----TESDQKYLRAI 360

Query: 612 KNTED 616
           +   +
Sbjct: 361 EELTN 365


>gi|210631565|ref|ZP_03296936.1| hypothetical protein COLSTE_00821 [Collinsella stercoris DSM 13279]
 gi|210160006|gb|EEA90977.1| hypothetical protein COLSTE_00821 [Collinsella stercoris DSM 13279]
          Length = 595

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 133/372 (35%), Gaps = 44/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
           SPT  Q ++I   L           +     G+GKT   L+     +             
Sbjct: 61  SPTPVQAASIPHALDGEDV------LAAAQTGTGKTAAFLLPTMNNLPHVPRGRARGRVA 114

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G   +++ P   LAQQ  +  +   + T      + G +    +R  L+R       I
Sbjct: 115 AQGPLMLVVTPTRELAQQIEDVCRAIAKCTGHTSVTVVGGVSYNPQRDKLKR----GCDI 170

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTA 428
           +I T    QD I            L+L   D     G     R  +         LL +A
Sbjct: 171 LIATPGRLQDLIDQGACSLDQVQVLVLDEADRMLDMGFLPAVRRIVGYTRDDRQTLLFSA 230

Query: 429 TPIPRTL--VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           T   + +  +   + D    +I    +    ++  ++P++   +      V+  EG    
Sbjct: 231 TLDEQAVGSITDLVHDPARVEIAPVTSTADTVEQYVLPVSLEAKNALLASVLKREGASRA 290

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +  + + + ++  R               + A IHG  S   +E  + +F+ G C +L+
Sbjct: 291 IVFCRTKHRADACSRR--------LARAGITCAAIHGDRSQAQRERALKAFRAGECDVLV 342

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V+  GID+ D   ++  +     +  +H++ GR GR  E+   +    P      Y 
Sbjct: 343 ATDVLARGIDISDVRYVVNFDVPEDPVDYIHRI-GRTGRAGELGWSLTFVTPDDVAEFYD 401

Query: 607 RLSVLKNTEDGF 618
             +++  T D F
Sbjct: 402 IEALMGKTADLF 413


>gi|195115577|ref|XP_002002333.1| GI13281 [Drosophila mojavensis]
 gi|193912908|gb|EDW11775.1| GI13281 [Drosophila mojavensis]
          Length = 649

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 133/349 (38%), Gaps = 42/349 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q+ +I  I +          +     GSGKT   L+ + + +            QA
Sbjct: 258 PTPIQKVSIPVIAEGRD------LMACAQTGSGKTAAFLLPILSNILDESHDLEIGKPQA 311

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI++P   LA Q +   +K+  +T + + I+ G     ++ + + +      H++I T  
Sbjct: 312 VIVSPTRELAIQIFNEARKFAYSTYLKISIVYGGTSFKYQNECITK----GCHVLIATPG 367

Query: 385 LFQDSIQY--------YKLILVIVDEQHRFGV---QQRLKLTQKATAPHVLLMTATPIP- 432
              D +            ++L   D     G     +++   Q   A H  LM +   P 
Sbjct: 368 RLLDFVDRTFITFNDTRFVVLDEADRMLDMGFSDSMRKIMHHQTMRAEHQTLMFSATFPE 427

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + +    L +     I         ++  I  +N+ ++  + ++ +L EG     +  
Sbjct: 428 EIQRMAGEFLRNYVFVTIGVVGGACSDVQQTIYEVNKFNKRSKLME-ILREGADGTIVF- 485

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +E K+ ++F        S           IHG      +E  +  FKNGT K+LIAT+V
Sbjct: 486 -VETKRAADF------LASFFSETEFPTTSIHGDRLQSQREQALRDFKNGTMKVLIATSV 538

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              G+D+ +   +I  +        +H++ GR GR          + P 
Sbjct: 539 ASRGLDIKNVKHVINYDMPSNIDDYVHRI-GRTGRVGNSGRATSFFDPD 586


>gi|146284217|ref|YP_001174370.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri A1501]
 gi|145572422|gb|ABP81528.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri A1501]
          Length = 512

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 81/453 (17%), Positives = 173/453 (38%), Gaps = 50/453 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + + + T  Q  ++  +L+          I Q   GSGKT    IA+   +     G
Sbjct: 71  LEALGYATMTPIQAQSLPLMLKGHD------LIAQAKTGSGKTAAFGIALLDPLNPRYFG 124

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    I +  + G +    +  +LE      AH+I+
Sbjct: 125 CQALVLCPTRELADQVAKELRRLARAADNIKILTLCGGVSIGPQIASLEH----GAHVIV 180

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L L  ++        + L +        ++  T     +TL+ ++ 
Sbjct: 181 GTPGRVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAEIIGQTPA-KRQTLLFSAT 239

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
               I ++          + V +     D  IE+    +   ++   +   +   +  + 
Sbjct: 240 YPASIEQLAASFMRAP--QQVRVESLHTDSQIEQRFYEIDPEQRLDAVARLLASFRPESC 297

Query: 501 RSVV---ERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            +     ++   L E+      S A ++G +   D++ V+  F N +  +L+AT V   G
Sbjct: 298 VAFCFTKQQCQELVEYLNGKGISAAALNGDLEQRDRDQVLAMFANRSLSVLVATDVAARG 357

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV---- 610
           +D+    ++I           +H++ GR GR         L  P  +  +     +    
Sbjct: 358 LDIDALDMVINVELARDPEIHVHRI-GRTGRAGNQGLAASLVAPAEAHRAQAIEKLQKSP 416

Query: 611 -----LKNTEDG-----------FLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELH 652
                L   + G             IA     + + G+ILG     +G+P   + +  + 
Sbjct: 417 LNWHSLDELKAGAGAPLQPPMVTLCIAAGRKDKLRPGDILGALTGDAGLPGSQVGKIAIF 476

Query: 653 D--SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           D  + + + R  AK  L +  +   ++G+S+++
Sbjct: 477 DFQAFVAVERDAAKQALKRLNE-GKIKGRSLKV 508


>gi|262396820|ref|YP_003288673.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
 gi|262340414|gb|ACY54208.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
          Length = 644

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 146/365 (40%), Gaps = 27/365 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   ++      QA+++A
Sbjct: 28  SPTPIQAAAIPHLLEG------ADALGKAQTGTGKTAAFSLPLLNKIDLNQRKPQAIVLA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   +N   + V  I G      + +AL+      A +I+GT    Q
Sbjct: 82  PTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKS----GAQVIVGTPGRVQ 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDI 445
           D I   +L    +DE + F + +  ++        V  ++  A    + ++ ++     +
Sbjct: 138 DLINRERL---HLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPML 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            KI E+   R+P+   +   N   + +++   V+   +K   +   +E ++         
Sbjct: 195 KKIVERFL-REPVMVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V K++ +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQ 372

Query: 620 IAEED 624
           +   D
Sbjct: 373 LPLRD 377


>gi|195397525|ref|XP_002057379.1| GJ17053 [Drosophila virilis]
 gi|194147146|gb|EDW62865.1| GJ17053 [Drosophila virilis]
          Length = 1244

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 79/377 (20%), Positives = 150/377 (39%), Gaps = 42/377 (11%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K    +LR + F  PT  Q  AI  I+           I     GSGKTL  ++ M   
Sbjct: 545 SKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRD------LIGIAKTGSGKTLAFILPMFRH 598

Query: 318 VEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +          G  A+IMAP   L  Q  + I+K++++  +    + G    + +   L+
Sbjct: 599 ILDQPSLEDGDGAIAIIMAPTRELCMQIGKDIRKFSRSLGLRPVCVYGGTGISEQIAELK 658

Query: 370 RIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           R     A II+ T     D +           ++  V++DE  R                
Sbjct: 659 R----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVM----- 709

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             ++    P  +T++ ++     +  +  +   +KP++ ++   + + + +E+  V+LS+
Sbjct: 710 -RIIDNVRPDRQTVMFSATFPRQMEALARR-ILKKPVEVIVGGRSVVCKDVEQNVVILSD 767

Query: 482 GKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534
             K + +   +   +E      F    E  + L      +      +HG +   D++S +
Sbjct: 768 EAKFFKLLELLGVYQETGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTI 827

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR     S   
Sbjct: 828 IDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHR-CGRTGRAGNKGSAYT 886

Query: 595 LYHPPLSKNSYTRLSVL 611
              P  S+ +   +  L
Sbjct: 887 FITPEQSRYAGDVIRAL 903


>gi|195395963|ref|XP_002056603.1| GJ11034 [Drosophila virilis]
 gi|194143312|gb|EDW59715.1| GJ11034 [Drosophila virilis]
          Length = 817

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 67/380 (17%), Positives = 133/380 (35%), Gaps = 50/380 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ AI  I+           +     GSGKT   L+ +   +   G         
Sbjct: 326 KPTPVQKYAIPIIISGRD------LMACAQTGSGKTAAFLVPILNQMYEHGLSAPPQSNR 379

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                      +++AP   LA Q +E  KK+   +++   ++ G    + + + L+R   
Sbjct: 380 QYSRRKQFPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDR--- 436

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+I+ T    +D I   K+ L  +     DE  R          Q       L M  
Sbjct: 437 -GCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEP--QIRRIVEQLNMPP 493

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++     I ++         I   +  +    E I +  + + +  K  ++
Sbjct: 494 TGQRQTLMFSATFPKQIQELASDFLS-NYIFLAVGRVGSTSENITQTILWVYDQDKRSYL 552

Query: 489 CPQIEEKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              +   ++                +   +            +  IHG  +  ++E  + 
Sbjct: 553 LDLLSSIRDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALR 612

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G C +L+AT V   G+D+   + +I  +        +H++ GR GR   +      
Sbjct: 613 CFRSGDCPILVATAVAARGLDIPHVTHVINFDLPTDVEEYVHRI-GRTGRMGNLGVATSF 671

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           ++          L +L  T+
Sbjct: 672 FNDKNRNICSDLLELLIETK 691


>gi|189240548|ref|XP_973126.2| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
          Length = 984

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 142/373 (38%), Gaps = 42/373 (11%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-- 320
            IL+ + F  PT  Q  AI  I+           I     GSGKTL  L+ M   +    
Sbjct: 338 NILKKLGFEKPTPIQVQAIPAIMSGRD------LIGIAKTGSGKTLAFLLPMFRHILDQP 391

Query: 321 ------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                 G  A+IM P   L  Q  + IKK+T++  +    + G    + +   L+R    
Sbjct: 392 PLEELDGPIAIIMTPTRELCMQIGKDIKKFTKSLNLHAVCVYGGTGISEQIAELKR---- 447

Query: 375 QAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            A II+ T     D +           ++  +++DE  R                  ++ 
Sbjct: 448 GAEIIVCTPGRMIDMLAANGGKVTNLRRVTYIVLDEADRMFDMGFEPQVM------RIID 501

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
              P  +T++ ++     +  +  +   +KPI+  +   + + + +E+  V+L E +K  
Sbjct: 502 NVRPDRQTVMFSATFPRQMEALARR-ILQKPIEVQVGGRSVVCKDVEQHVVILEEDQKFL 560

Query: 487 WICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +   +    E        + +   +           +   +HG +   D++S +  FK+
Sbjct: 561 KLLELLGLYHEHGSIIVFVDKQENADILLKELMKAAYNCLSLHGGIDQFDRDSTIIDFKS 620

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  KLLIAT+V   G+DV    +++  +  +     +H+  GR GR            P 
Sbjct: 621 GKVKLLIATSVAARGLDVKHLILVVNYDCPNHYEDYVHR-CGRTGRAGNKGFAYTFITPE 679

Query: 600 LSKNSYTRLSVLK 612
            S+ +   +   +
Sbjct: 680 QSRYAGDIIRAFE 692


>gi|91205891|ref|YP_538246.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii RML369-C]
 gi|157826748|ref|YP_001495812.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii OSU 85-389]
 gi|91069435|gb|ABE05157.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii RML369-C]
 gi|157802052|gb|ABV78775.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii OSU 85-389]
          Length = 411

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 138/359 (38%), Gaps = 35/359 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQAVIMAPI 330
            PT+ Q+ +I   +           +     GSGKTL  L+ +  A ++     +I+ P 
Sbjct: 21  EPTEIQKQSIPVAIAG------SDILASSQTGSGKTLAYLLPVINAFIKDKTTTLILVPT 74

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q    + K T + +I   ++ G  P   +   L++       +IIGT     D +
Sbjct: 75  RELATQICSTLNKVTTSFKINNAVLIGGEPMPKQFTQLKK----NPKVIIGTPGRIIDHL 130

Query: 391 QYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               L        +L  +D     G++++L+   K               + L+ ++   
Sbjct: 131 NRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEK---------RQVLMFSATMP 181

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----E 497
             I  +++K     P++  +   N+    I++  V +++ +K   +  Q+ +++      
Sbjct: 182 KHIISLSQKYLN-NPVRITVGATNKAAAEIKQESVHITDKEKFTELNKQLGDREGSVIIF 240

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++   +  +       IHG +S   ++ V+ SF+    ++++AT V   G+D+
Sbjct: 241 VKTKRSADQLAKMLRYENHKAEAIHGDLSQRQRDRVILSFRKSNHRIMVATDVAARGLDI 300

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
                +I  +        LH++ GR GR     + +    P           ++   E 
Sbjct: 301 PHTQHVINYDLPMCPEDYLHRI-GRTGRAGAKGNALSFISPDDVIRWRAIDRLINQGES 358


>gi|270011364|gb|EFA07812.1| hypothetical protein TcasGA2_TC005373 [Tribolium castaneum]
          Length = 1007

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 142/373 (38%), Gaps = 42/373 (11%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-- 320
            IL+ + F  PT  Q  AI  I+           I     GSGKTL  L+ M   +    
Sbjct: 361 NILKKLGFEKPTPIQVQAIPAIMSGRD------LIGIAKTGSGKTLAFLLPMFRHILDQP 414

Query: 321 ------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                 G  A+IM P   L  Q  + IKK+T++  +    + G    + +   L+R    
Sbjct: 415 PLEELDGPIAIIMTPTRELCMQIGKDIKKFTKSLNLHAVCVYGGTGISEQIAELKR---- 470

Query: 375 QAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            A II+ T     D +           ++  +++DE  R                  ++ 
Sbjct: 471 GAEIIVCTPGRMIDMLAANGGKVTNLRRVTYIVLDEADRMFDMGFEPQVM------RIID 524

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
              P  +T++ ++     +  +  +   +KPI+  +   + + + +E+  V+L E +K  
Sbjct: 525 NVRPDRQTVMFSATFPRQMEALARR-ILQKPIEVQVGGRSVVCKDVEQHVVILEEDQKFL 583

Query: 487 WICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +   +    E        + +   +           +   +HG +   D++S +  FK+
Sbjct: 584 KLLELLGLYHEHGSIIVFVDKQENADILLKELMKAAYNCLSLHGGIDQFDRDSTIIDFKS 643

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  KLLIAT+V   G+DV    +++  +  +     +H+  GR GR            P 
Sbjct: 644 GKVKLLIATSVAARGLDVKHLILVVNYDCPNHYEDYVHR-CGRTGRAGNKGFAYTFITPE 702

Query: 600 LSKNSYTRLSVLK 612
            S+ +   +   +
Sbjct: 703 QSRYAGDIIRAFE 715


>gi|195060349|ref|XP_001995786.1| GH17577 [Drosophila grimshawi]
 gi|193896572|gb|EDV95438.1| GH17577 [Drosophila grimshawi]
          Length = 1302

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 71/377 (18%), Positives = 148/377 (39%), Gaps = 42/377 (11%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K    +LR + F  PT  Q  AI  I+           I     GSGKTL  ++ M   
Sbjct: 581 SKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRD------LIGIAKTGSGKTLAFILPMFRH 634

Query: 318 VEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +          G  A+IMAP   L  Q  + I++++++  +    + G    + +   L+
Sbjct: 635 ILDQPTLEDGDGAIAIIMAPTRELCMQIGKDIRRFSRSLGLRPVCVYGGTGISEQIAELK 694

Query: 370 RIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           R     A II+ T     D +           ++  V++DE  R                
Sbjct: 695 R----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVM----- 745

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             ++    P  +T++ ++     +  +  +   +KP++ ++   + + + +E+  V+L++
Sbjct: 746 -RIIDNVRPDRQTVMFSATFPRQMEALARR-ILKKPVEVIVGGRSVVCKDVEQHVVILND 803

Query: 482 GKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             K + +   +   +E+       + +   +         +     +HG +   D++S +
Sbjct: 804 EAKFFKLLELLGIYQETGSIIVFVDKQENADILLRDLMRASYPCMSLHGGIDQFDRDSTI 863

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+G  +LLIAT+V   G+DV D  +++  +  +     +H+  GR GR         
Sbjct: 864 IDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHR-CGRTGRAGNKGCAFT 922

Query: 595 LYHPPLSKNSYTRLSVL 611
              P  ++ +   +   
Sbjct: 923 FITPEQARYAGDVIRAF 939


>gi|262275236|ref|ZP_06053046.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
 gi|262220481|gb|EEY71796.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
          Length = 410

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 68/358 (18%), Positives = 132/358 (36%), Gaps = 25/358 (6%)

Query: 254 PINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
             ++     Q  L  + +S PT  Q+ AI  +L           +     G+GKT    +
Sbjct: 5   AFSLLHPTLQHTLNALGYSDPTAIQQQAIPHVLDGKDV------MGAAQTGTGKTAAFAL 58

Query: 313 AMA-AAVEAG----GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            +    +E G     + +++ P   LAQQ YE + +Y+Q+T +    + G      ++  
Sbjct: 59  PVIHQLLERGVKGAARVLVVTPTRELAQQVYEKVVEYSQHTSLKCVALYGGANINPQKNQ 118

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L +    +  II+GT     D +    L L  +D         R+      +    L+  
Sbjct: 119 LTK----KPEIIVGTPGRLLDHLHIGTLTLNSLD-TLILDEADRMLDMGFISDIKRLMKK 173

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                +TL  ++     +  +  +     P++  +   N   E + +L   + + +K   
Sbjct: 174 MPKTRQTLFFSATYPKQVVDLAYR-LLSNPVRIEVSTANSTAETVNQLVHPVDKKRKREL 232

Query: 488 ICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +   I  +           R   E   +  +        IHG  +   +  V++ FK+G 
Sbjct: 233 LSYLIGSRNLQQVLVFAKTRQSTEALANELKLDGLKAEAIHGEKTQGARNRVLEGFKSGE 292

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            ++L+AT V   G+D+     +      H     +H++ GR GR  +    I L    
Sbjct: 293 VRVLVATDVAARGLDIPSLDTVFNYELPHQPEDYIHRI-GRTGRAGKPGMAISLVSRE 349


>gi|110760457|ref|XP_391829.3| PREDICTED: putative ATP-dependent RNA helicase Pl10 [Apis
           mellifera]
          Length = 701

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 147/410 (35%), Gaps = 51/410 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQ------- 323
            PT  Q+ AI  I+       R   +     GSGKT   L+ +   + E+G +       
Sbjct: 245 KPTPVQKYAIPIII------GRRDVMACAQTGSGKTAAFLVPILNQIYESGPRPPPINSS 298

Query: 324 --------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                    +++AP   LA Q Y+  +K+   +++   ++ G      + + L+R     
Sbjct: 299 GKRKHFPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGSNIVDQMRELDR----G 354

Query: 376 AHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
            H+++ T     D +   K+ L     +++DE  R          ++        M  T 
Sbjct: 355 CHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEPQIRRIVQEDT--MPPTG 412

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +TL+ ++    +I  +  +      I   +  +    E I +  V + E  K  ++  
Sbjct: 413 ERQTLMFSATFPKEIQMLA-RDFLSNYIFLAVGRVGSTSENITQKIVWVEEHDKRSYLLD 471

Query: 491 QIEEKKESNF------------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            ++    S+             +   +            +  IHG  +  ++E  +  F+
Sbjct: 472 LLQASNFSDPSAESLTLVFVETKKGADMLEEYLHQMGYPVTSIHGDRTQREREDALRRFR 531

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+AT V   G+D+     +I  +        +H++ GR GR   +      ++ 
Sbjct: 532 AGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRI-GRTGRMGNLGLATSFFNN 590

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDL--KQRKEGEILGIKQSGMPKFLI 646
                    +S+L           +D+  + R  G   G +++G  K   
Sbjct: 591 KNINLVRDLVSLLVEANQELPPWLDDMFSEARYSGG--GSRRAGSTKGRF 638


>gi|315644143|ref|ZP_07897313.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315280518|gb|EFU43807.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 481

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 148/378 (39%), Gaps = 40/378 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  ++ L ++ ++ PT+ Q   I   L+      +   +++   GSGKT    I +   
Sbjct: 12  SEEIRRALDSLGYTTPTEVQTEVIPVALE------KRDLVVKSQTGSGKTAAYGIPLCEQ 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+I+ P   LA Q  E I    +  +I    + G  P   ++  L++    
Sbjct: 66  VEWNENKPQALILTPTRELALQVNEDITNIGRFKRIKATPLYGRHPFHMQKAELKQ---- 121

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGV-QQRLKLTQKATAPHVLL 425
           + HI++GT     D I+   L L  +        DE    G  +Q   + Q      V +
Sbjct: 122 RTHIVVGTPGRVLDHIERGSLSLDRISHLVIDEADEMLNMGFIEQVQSIIQALPRNRVTM 181

Query: 426 MTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           + +   P     L    +   +  +I         I    + +   D++     ++++  
Sbjct: 182 LFSATFPEDVAKLAHKYMNHPEQIEIKASGLTTATIDHAQVQVKEADKLAVLQNLLITTN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  +  + +E  ++ FR++ +               IHG M   ++  VM +F+ G  
Sbjct: 242 PDSCIVFCRTQEHVDTLFRALAD--------LGYPCDRIHGGMEQEERFEVMHAFRRGQF 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + LIAT V   GID+ + + +I  +      + +H+  GR GR  +  S I L  P  S 
Sbjct: 294 RYLIATDVAARGIDISNITHVINYDIPLEKESYVHR-TGRTGRAGQTGSAITLVTPRDSG 352

Query: 603 NSYTRLSVLKNTEDGFLI 620
                 + +     GF I
Sbjct: 353 RLADIEAYI-----GFAI 365


>gi|222086115|ref|YP_002544647.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84]
 gi|221723563|gb|ACM26719.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84]
          Length = 506

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 142/364 (39%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   LQ      R         G+GKT   ++ M   +E G       + +
Sbjct: 24  TPTPIQAGAIPFALQ------RRDICGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  +KY +N ++ + ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVAENFEKYGKNHRLNIALLIGGVSFEEQDRKLER----GADVLICTPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPI--PR 433
             D  +  KL++      ++DE  R      +   ++           L  +AT     +
Sbjct: 134 LLDHFERGKLLMSAVEIFVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSATMPAEIQ 193

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSEGKKAYWIC 489
            L    L + +  +++   +  K +    +  +  D      +  L    ++ K A   C
Sbjct: 194 KLADRFLQNPERVEVSAPASTAKTVTQRFVASHGKDYEKRAALRDLIRAQTDLKNAIIFC 253

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +  +        V + F SL  H   S+  +HG M    + +++ +F++G  +LL+A+ 
Sbjct: 254 NRKVD--------VADLFRSLQRHG-FSVGALHGDMDQRSRTTMLQNFRDGQIQLLVASD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D   +   +        +H++ GR GR     +   L     +K+      
Sbjct: 305 VAARGLDLPDVGHVFNFDVPIHSEDYVHRI-GRTGRAGRSGAAFTLVTKRDTKHIDAIEK 363

Query: 610 VLKN 613
           ++  
Sbjct: 364 LIGE 367


>gi|311031130|ref|ZP_07709220.1| DEAD/DEAH box helicase domain protein [Bacillus sp. m3-13]
          Length = 507

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 90/429 (20%), Positives = 162/429 (37%), Gaps = 30/429 (6%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           +  + F   T  Q   I   L           I Q   G+GKT+   + +   V+     
Sbjct: 17  IDRMGFEEATPIQSETIPVALTGKDV------IGQAQTGTGKTIAFGLPLLENVDVTNES 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++AP   LA Q  E I K + + +  V  + G    + + ++L++      HI++G
Sbjct: 71  IQGIVIAPTRELAIQVAEEIYKASYHKRARVLSVFGGQDISRQIRSLKK----NPHIVVG 126

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D I    L L  V+        + L +        +L  T     +TL+ ++  
Sbjct: 127 TPGRLLDHINRKTLRLQNVNTVVLDEADEMLNMGFIEDIEKILAET-PEKKQTLLFSATM 185

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ES 498
              I  I E+    +P+   +         I++  V + E KK   +   ++ +      
Sbjct: 186 PAPIRAIAERFM-SEPVNVKVQAKELTISNIQQFYVEVPEKKKFDTLTRLLDIQSPELAI 244

Query: 499 NFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F     R + L +       S   IHG +S   + SV+  FK G+  +L+AT V   G+
Sbjct: 245 IFGRTKRRVDELSDALNVRGYSAEGIHGDLSQAKRMSVLRKFKEGSIDVLVATDVAARGL 304

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+   + +   +      + +H++ GR GR  +    I    P      +    V K   
Sbjct: 305 DISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKSGLAITFVSPREVSYLHHVERVTKRKM 363

Query: 616 DGFLIAEED--LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI-----ARKDAKHILT 668
           D       D  L+ +++  +  + Q+   K L       + LLE          A  + T
Sbjct: 364 DKLKAPTLDEALEGQQKMSMEKLTQAVEAKNLGFYRNAAEQLLEEHDAITLVSAALKLFT 423

Query: 669 QDPDLTSVR 677
           ++PD T +R
Sbjct: 424 KEPDETPIR 432


>gi|195441137|ref|XP_002068383.1| GK13754 [Drosophila willistoni]
 gi|194164468|gb|EDW79369.1| GK13754 [Drosophila willistoni]
          Length = 839

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 71/395 (17%), Positives = 143/395 (36%), Gaps = 44/395 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              + ++ + + +     PT  Q  A+   L           I     GSGKT   +  +
Sbjct: 306 FGFDDQLIKAVRKAEYTQPTSIQAQAVPCALAGRD------IIGIAKTGSGKTAAFIWPL 359

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   +I+AP   L+ Q Y   K++ +   + V    G   +  + K
Sbjct: 360 LMHLMDQRELKAGEGPIGLILAPTRELSLQIYNEAKRFGKVYNLRVVCCYGGGSKWEQSK 419

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAP 421
           ALE+     A II+ T     D ++       ++  +++DE  R                
Sbjct: 420 ALEQ----GAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFE------PQV 469

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             +     P  +TL+ ++     I ++  +     PI+ V   +N  ++ + +   VL  
Sbjct: 470 RSICQHVRPDRQTLLFSATFKRRIERLA-RDVLTDPIRIVQGELNEANQDVTQAVYVLPN 528

Query: 482 GKKAY--WICPQIEEKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            ++ +   +C  ++   E +       ++  E           +  ++HG M   D+  V
Sbjct: 529 PQQKWNWLLCHLVKFLAEGSCLIFVTKKADAETVAHQLLVKEFNCLLLHGDMDQADRNKV 588

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  FK   C +LIAT V   G+D+     ++  +         H++ GR GR  E  +  
Sbjct: 589 IMQFKRKECDILIATDVAARGLDIPHIRNVVNYDIARDIDTHTHRI-GRTGRAGEKGNAH 647

Query: 594 LLYHPPLSKNSYTRLSVLKNTE-----DGFLIAEE 623
            L      + +   +  L+  +     D   +A +
Sbjct: 648 TLVTEKDKEFAGHLVRNLEGADQPVPSDLLELAMK 682


>gi|170742455|ref|YP_001771110.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168196729|gb|ACA18676.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 482

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 34/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI  +L       R   +     G+GKT    + M   +E G       + +
Sbjct: 23  TPTPIQAQAIPHVLA------RRDVLGVAQTGTGKTAAFTLPMLTRLEQGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  ++Y  N ++ V ++ G +  A +   + R       ++I T   
Sbjct: 77  ILEPTRELAAQVVENFERYGTNHKLNVALLIGGVSFADQDAKITR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKL-----ILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--R 433
             D  +  KL      L+++DE  R      +   ++           L  +AT  P  +
Sbjct: 133 LLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKLVPFTRQTLFFSATMPPEIQ 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L    L +    ++    +    I   ++          +    L  G           
Sbjct: 193 RLADDFLHNPVRIEVARPASTASTIAQRLVATGGEGHEKRKTLRGLIRGA-----VELRN 247

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N +  V +      +   ++A +HG M    + + +D+F++G   LL+A+ V   
Sbjct: 248 GLIFCNRKRDVAQLQRSLANHGFNVAALHGDMDQRARMAALDAFRSGEVPLLVASDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           G+D+   S +   +  H     +H++ GR GR     +   L 
Sbjct: 308 GLDIPAVSHVFNFDVPHHAEDYVHRI-GRTGRAGRSGAAFTLV 349


>gi|325104041|ref|YP_004273695.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324972889|gb|ADY51873.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 451

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 140/376 (37%), Gaps = 39/376 (10%)

Query: 260 KIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +  QK L+ + + +PT  Q  AI  ILQ      R   +     G+GKT    I +   +
Sbjct: 11  QPIQKALKALNYQTPTPIQAQAIPLILQ------RKDLLGCAQTGTGKTAAFAIPILQLL 64

Query: 319 EAG---------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +            +A+I+ P   LA Q  +    Y +N ++   +I G + Q  +  AL+
Sbjct: 65  DEDLKKNHQKNTIKALIVTPTRELAIQIGDSFSDYGKNLRLKHAVIFGGVNQKSQVDALQ 124

Query: 370 RIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           +       I++ T     D      +    + L ++DE  R      +   +K      +
Sbjct: 125 K----GVDILVATPGRLLDLMHQKHLSLKHINLFVLDEADRMLDMGFINDVKK------I 174

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +       ++L  ++     I K++E    + P+K  + P++   + I +    + +  K
Sbjct: 175 IAVLPQHRQSLFFSATMPPVIQKLSE-EILKSPVKVEVTPVSSTADTINQTVFFVDKNNK 233

Query: 485 AYWICPQIEEK------KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
              +   ++++        +  +   +R            A IHG  S   ++  +D FK
Sbjct: 234 NDLLLHILKDQLLDSVLVFTRTKHGADRVVKTLAKQHIKSAAIHGNKSQNARQRALDDFK 293

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
               ++L+AT +   GID+     +I     +     +H++ GR GR       I     
Sbjct: 294 TKAIRVLVATDIAARGIDIDSLKYVINYEIPNIPETYVHRI-GRSGRAGAEGIAISFCDV 352

Query: 599 PLSKNSYTRLSVLKNT 614
                      ++  +
Sbjct: 353 DEKPFLKDIEKIIGKS 368


>gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
 gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
          Length = 534

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 87/418 (20%), Positives = 147/418 (35%), Gaps = 44/418 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           LR++ F  P   Q  AI  +L           I+Q   G+GKT    + +   +     G
Sbjct: 27  LRDVGFEQPMPVQTEAIPVLLSGRD------AIVQAHTGTGKTAAFALPILQGLVPYGHG 80

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I +  +     V  + G  P   + +AL         +I+G
Sbjct: 81  PQALVLTPTRELAIQVAEAIHRLGRYLDARVLALYGGQPIERQLRALRHP----VDVIVG 136

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPI 431
           T     D ++   L L  V        DE    G  + ++             L +AT  
Sbjct: 137 TPGRIMDHLRRETLRLDQVRVVILDEADEMLDMGFIEDVEWILEHVPRERQTALFSATIP 196

Query: 432 PRTLVLTSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           PR   LT         I   P       I   +  +    ++    +++  E   +  I 
Sbjct: 197 PRIRQLTQRYLRAPVTIAIHPERVTVPSIAQTVYEVAAHAKLEALSRILDYEAPTSAIIF 256

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +S  +      +    +   IHG +S   ++  M  F+ G   LLIAT 
Sbjct: 257 VRT--------KSGADELAHKLQSLGYAAEAIHGDLSQAMRDRAMQRFRAGQVDLLIATD 308

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+   S +I  +      + +H++ GR GR     + I L  P       T   
Sbjct: 309 VAARGLDIPAVSHVINFDIPSDPESYVHRI-GRTGRAGATGTAITLIEPRERWLLRTIER 367

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            +        I   +   R++ E+LG   S + +            LE+ R+    +L
Sbjct: 368 AIGQRLIPKRIPTREEIARRQRELLGASLSEVIEQRD---------LELGRRIVDQLL 416


>gi|156554399|ref|XP_001604593.1| PREDICTED: similar to DEAD box polypeptide 5 [Nasonia vitripennis]
          Length = 551

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 86/454 (18%), Positives = 155/454 (34%), Gaps = 57/454 (12%)

Query: 221 TSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI---PF-SPTKS 276
               RE   + E     +      K  K    I    EG     +++ I    +  PT  
Sbjct: 98  NRHPREVNEFRETHKITL------KGDKVPNPIQFFEEGNFPDYVMQGIKKQGYSEPTPI 151

Query: 277 QESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMA 328
           Q       +        M+ I Q   GSGKTL  ++     +          G  A+I+A
Sbjct: 152 QAQGWPIAM----SGKNMVGIAQ--TGSGKTLAYILPAIVHINSQQPLNRGDGPIALILA 205

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ       +   + +    I G  P+  + + LER       I+I T     D
Sbjct: 206 PTRELAQQIQTVASDFGSLSYVRNTCIFGGAPKGGQARDLER----GVEIVIATPGRLID 261

Query: 389 SIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            ++           L+L   D     G   Q R  + Q      VL+ +AT      +L 
Sbjct: 262 FLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKEVRMLA 321

Query: 439 SLGDIDISKIT----EKPAGRKPIKTVIIPINRIDE-----VIERLKVVLSEGKKAYWIC 489
               +D +++     +  A    ++ + +   +  E     +++ +  V  +G K     
Sbjct: 322 EEYLVDYTQLNIGSLQLAANHNILQIIDVCQEQEKETKLGTLLQEIGNVNDDGGKTIIFV 381

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +  VE        +      +HG  S  +++ V+  F+N    +L+AT 
Sbjct: 382 ---------ETKKKVENITRNIRRYGWPAVCMHGDKSQQERDYVLREFRNKKGSILVATD 432

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV D   +I  +        +H++ GR GR +   +    + P   + +   ++
Sbjct: 433 VAARGLDVDDVRYVINFDYPSSSEDYIHRI-GRTGRSQSSGTSYAFFTPQNGRQAKDLIN 491

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
           VL+           +L  +      G  + G   
Sbjct: 492 VLREANQIINPKLSELASKGGNNFGGRNRWGYSG 525


>gi|153827325|ref|ZP_01979992.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
 gi|262169080|ref|ZP_06036773.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
 gi|262190964|ref|ZP_06049177.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
 gi|149738767|gb|EDM53109.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
 gi|262022361|gb|EEY41069.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
 gi|262033168|gb|EEY51693.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
          Length = 643

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 29/398 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +   +   QA++MA
Sbjct: 28  SPTPIQAAAIPVLLEGRD------ALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN   + V  I G      + +AL+      AHI++GT    +
Sbjct: 82  PTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS----GAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M   P   + ++ ++     +
Sbjct: 138 DLITRDRL---HLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMV 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            +I E+   R P    +   N+    +E+   V+   +K   +   +E ++         
Sbjct: 195 KEIVERFL-RDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V +++ +   
Sbjct: 314 ITHVYNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQ 372

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +   D  +  E  +  + Q        +  E    L+E
Sbjct: 373 LPHRD--KVAESRLTKLGQELAADKEFSSLERFADLVE 408


>gi|91772311|ref|YP_565003.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
           6242]
 gi|91711326|gb|ABE51253.1| DEAD-box RNA helicase [Methanococcoides burtonii DSM 6242]
          Length = 463

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 137/372 (36%), Gaps = 42/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           SPT  QE +I  +L +      M+ I Q   G+GKT   ++ +   + A          +
Sbjct: 23  SPTPIQELSIPHLLDN----RDMIGIAQ--TGTGKTAAFILPILQNMSAIHKKATPKKPR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  E    Y + T+    ++ G + Q  + +AL R        ++ T 
Sbjct: 77  VLVLAPTRELAAQIGESFATYGKYTRYKHTVVFGGVGQTPQVRALSR----GVDCLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D      I+   +   ++DE  R      L    K      ++       ++L  +
Sbjct: 133 GRLLDLIQQGHIKLSNVEYFVLDEADRMLDMGFLNDVNK------IVDMLPKKRQSLFFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    +IS +  K     P +  + P     E IE+    +    K   +   +  +   
Sbjct: 187 ATMSPEISTLARK-MLSNPAQVEVTPQATTVERIEQFIFFVDSDNKNELLLHLLRGEHLD 245

Query: 499 N---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F     R N + E    S      IHG  S   +   + +FK+G  ++L+AT +  
Sbjct: 246 CVLVFTRTKHRANKVTEMLNKSNINAGAIHGSKSQTHRTKTLQNFKSGQLRVLVATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+ D S +I  +  +   + +H++ GR  R     +                L  ++
Sbjct: 306 RGIDIEDISHVINYDLPNIPESYVHRI-GRTARAGAEGTAYSFCAADE----RDFLRDIE 360

Query: 613 NTED-GFLIAEE 623
              D    +AE 
Sbjct: 361 KLTDMEIEVAEH 372


>gi|313887901|ref|ZP_07821580.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846067|gb|EFR33449.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 544

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 77/351 (21%), Positives = 136/351 (38%), Gaps = 40/351 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           + ++ F  P++ QE+ I  IL+          + Q   G+GKT    I M   +E     
Sbjct: 16  IDDMGFESPSEVQEATIPLILEGRDV------LAQAQTGTGKTASFGIPMIEGIEDKSHN 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++ P   LA+Q  + +KK  +  + I +  I G      + + L++     A I++
Sbjct: 70  LQGLVLVPTRELARQVSDELKKLAKYKKFISIVPIYGGADMGKQLRDLKK----GADIVV 125

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++           L L   DE    G +  +           ++    P  
Sbjct: 126 GTPGRVMDHMKRKTIVLDDLKFLTLDEADEMFDMGFRDDM---------KTIIEKTNPDR 176

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL  ++  D DI + +       P K +I       E IE+  + L+   K   +   I
Sbjct: 177 QTLFFSATFDNDIKEFSRLY-QVDPAKVIIEKKELTAEKIEQFYLELNRNMKTEILNRLI 235

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              K        N + +VE            +  +HG M    +++VM  F+NGT  +LI
Sbjct: 236 LIHKPKKSIIFCNTKRMVEALELEIAQRGYKVDSLHGDMRQSSRDNVMKKFRNGTIDVLI 295

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           AT V   G+DV D  ++   +        +H++ GR  R  +  +      
Sbjct: 296 ATDVAARGLDVSDIDLVFNYDLPQQAEYYVHRI-GRTARAGKKGASFTFVT 345


>gi|332304872|ref|YP_004432723.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172201|gb|AEE21455.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 576

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 145/382 (37%), Gaps = 35/382 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N+  ++ Q + +     PT  Q   I  I++          +     G+GKT    + M
Sbjct: 12  LNLPAELLQALEKVGYEKPTPIQAQCIPLIMEGHD------LLGTAQTGTGKTAAFALPM 65

Query: 315 AAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALER 370
            A V+A     Q +++AP   LA Q  E  + Y   + ++ V  I G     ++ + L R
Sbjct: 66  LANVDANNSNTQLLVLAPTRELAIQVAEAFQVYASFSRKLNVLPIYGGSSYDNQIRQLRR 125

Query: 371 IAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLT--QKATA 420
                A +++GT     D I+           L+L   DE  R G    ++         
Sbjct: 126 ----GAQVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHAPAE 181

Query: 421 PHVLLMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               L +AT P P R +    L D    KI  K A    IK     +    ++    +++
Sbjct: 182 RQTALFSATMPDPIRKITKRYLSDPKQVKIESKVATASTIKQRYCQVAGHHKLEALTRIM 241

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
             E   A  I  + +        + +E    L     + +  ++G +    +E  ++  K
Sbjct: 242 EVEEFDAVIIFVRTKT-------ATMELSEKLSARGYA-VEPLNGDIPQNSRERTVERLK 293

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+AT V+  G+DV   S +I  +  +   + +H++ GR GR       IL    
Sbjct: 294 RGKIDILVATDVVARGLDVERVSHVINYDVPYDTESYVHRI-GRTGRAGRQGDAILFISH 352

Query: 599 PLSKNSYTRLSVLKNTEDGFLI 620
              +  ++     + + D   I
Sbjct: 353 REKRMLFSIERATRQSIDPMPI 374


>gi|224370609|ref|YP_002604773.1| DeaD [Desulfobacterium autotrophicum HRM2]
 gi|223693326|gb|ACN16609.1| DeaD [Desulfobacterium autotrophicum HRM2]
          Length = 616

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 85/419 (20%), Positives = 154/419 (36%), Gaps = 48/419 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L ++ +  PT  Q   I  IL           + Q   G+GKT    + + + ++     
Sbjct: 34  LDDLGYETPTTIQAETIPYILAGRD------LLGQAQTGTGKTAAFALPLLSRIDIKLKK 87

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E  K Y        V  + G    A +   L+R      H+I+
Sbjct: 88  PQVLVLAPTRELAIQVAESFKGYAARIKGFNVLPVYGGQAYAGQLNQLKR----GVHVIV 143

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTAT- 429
           GT     D ++   L L  +        DE  R G    ++    Q      V L +AT 
Sbjct: 144 GTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDDVEWILEQTPPGRQVALFSATM 203

Query: 430 --PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             PI +  +       D+  I  + A    I+     +    ++    +++ +E   A  
Sbjct: 204 PAPIKKIAIKYLTDPKDV-FIRLRTATADTIRQRFWMVKGTHKLDALTRILEAETFDAII 262

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +  + +        + VE    L     +++A+ +G ++   +E  +D FK G   +L+A
Sbjct: 263 VFVRTKT-------ATVELAEKLEARGYAAVAL-NGDIAQKARERTIDRFKKGKIDILVA 314

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV   S +I  +  +   + +H++ GR GR       IL   P         
Sbjct: 315 TDVAARGLDVERVSHVINYDIPNGAESYVHRI-GRTGRAGRAGDAILFVSPRERWMLKVI 373

Query: 608 LSVLKNTEDGFLI----AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
               +   +   +    A  D +           QS        + +L+  L+E  R++
Sbjct: 374 EKTTRQQIEMMKLPSTEAINDKRIAD------FNQSITDTLASKELDLYLELMEQYRQE 426


>gi|148226262|ref|NP_001080283.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Xenopus laevis]
 gi|27924277|gb|AAH44972.1| Pl10-prov protein [Xenopus laevis]
          Length = 697

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 67/374 (17%), Positives = 134/374 (35%), Gaps = 47/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I+       +   +     GSGKT   L+ + + + A G          
Sbjct: 244 PTPVQKHAIPIII------GKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLKD 297

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K+   +++   ++ G      + + LER 
Sbjct: 298 NGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLER- 356

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLM 426
                H+++ T     D ++  K+ L       +DE  R          ++        M
Sbjct: 357 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT--M 411

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
               + +T++ ++    +I  +       + I   +  +    E I +  V + E  K  
Sbjct: 412 PPKGVRQTMMFSATFPKEIQILARDFLD-EYIFLAVGRVGSTSENITQKVVWVEEMDKRS 470

Query: 487 WICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           ++   +               +   +       H   +   IHG  S  D+E  +  F++
Sbjct: 471 FLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 530

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G C +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++  
Sbjct: 531 GKCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATSFFNEK 589

Query: 600 LSKNSYTRLSVLKN 613
               +   L +L  
Sbjct: 590 NINITKDLLDLLVE 603


>gi|84515959|ref|ZP_01003320.1| DEAD/DEAH box helicase [Loktanella vestfoldensis SKA53]
 gi|84510401|gb|EAQ06857.1| DEAD/DEAH box helicase [Loktanella vestfoldensis SKA53]
          Length = 447

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 134/365 (36%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q  AI   +        ++ + Q   G+GKT    + M  A+   G        +
Sbjct: 24  DPTPIQTQAIPHAMNG----RDVMGLAQ--TGTGKTAAFGLPMIHALMKAGVKPNPKAVR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA+Q  + +  YT+ + + V ++ G      + K L     G   +++ T 
Sbjct: 78  GLVLAPTRELAKQIADNLTAYTKGSHLKVALVVGGAGITAQTKRLA----GGVDLLVATP 133

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +            L+L   D+    G    L+                   +T+
Sbjct: 134 GRLIDLLDRRAVRLDETVYLVLDEADQMLDMGFIHALRRIAP---------LLAKDRQTM 184

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     +S++ +       ++  + P  +  + I +    +++  K   +   +++ 
Sbjct: 185 MFSATMPKLMSELADAFLT-DAVRVQVNPPGQAVKKIAQSVHFVAQAAKTDLLVDLLDKH 243

Query: 496 KES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           ++         +   E+     E    + A IHG  S   +E  +++FK G  ++L+AT 
Sbjct: 244 RDELALVFGRTKHGCEKLYKTLEAKGFAAASIHGNKSQGQRERAIEAFKAGKVRVLVATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+     +   +  +     +H++ GR  R     S I L  P           
Sbjct: 304 VAARGIDIPGVRHVYNYDLPNVAENYVHRI-GRTARAGADGSAIALVAPDEMIELQDIEK 362

Query: 610 VLKNT 614
            +K T
Sbjct: 363 AMKET 367


>gi|256088555|ref|XP_002580396.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665966|emb|CAZ36635.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 1544

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 94/448 (20%), Positives = 166/448 (37%), Gaps = 45/448 (10%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI- 251
            LQKK      +   I + P RK    E    A+      +     +  + +R +   +  
Sbjct: 790  LQKKDKLQPIDHSKIEYFPFRKNFYVEVPELAKMSKEDVKAYRASLENIRVRGRECPKPL 849

Query: 252  --GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
               +   +  ++   + RN    PT  Q  A+  I+        M+ I     GSGKTL 
Sbjct: 850  RNWVQAGISSRLLACLKRNNFDKPTPIQCQALPVIM----SGRDMIGI--AKTGSGKTLA 903

Query: 310  ALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
             L+ +   +E         G  A+++AP   LA Q ++  KK  Q        + G    
Sbjct: 904  FLVPLMRHLEHQAPLNPGDGPIALLLAPTRELALQIFKETKKLCQAADARAVCVYGGTGI 963

Query: 362  AHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLK 413
            + +   L+R     A II+ T     D +          ++   V++DE  R        
Sbjct: 964  SEQIAELKR----GAEIIVCTPGRMIDMLAANGGRVTNLHRCSYVVLDEADRMFDLGFEP 1019

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                      ++    P  +TL+ ++     +  +  K     PI+  I   + +   +E
Sbjct: 1020 QVM------RIIENCRPDRQTLMFSATFPRQMEILARKVLTL-PIEIQIGGRSVVCSDVE 1072

Query: 474  RLKVVLSEGKKAYWICPQI----EEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMS 526
            +   +LSE +K Y +   +    EE     F    E  + L             +HG + 
Sbjct: 1073 QHAFILSEEEKVYKVLELLGIYQEEGSVLVFVEKQESADELMRVLLKYGYPCLSLHGGID 1132

Query: 527  DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              D++SV+  FK G  +LLIAT+V   G+DV D  ++I  +  +     +H+  GR GR 
Sbjct: 1133 QYDRDSVIMDFKRGNIRLLIATSVAARGLDVTDLLLVINYDCPNHYEDYVHR-CGRTGRA 1191

Query: 587  EEISSCILLYHPPLSKNSYTRLSVLKNT 614
                       P   +++   +   K +
Sbjct: 1192 GRKGFAYTFLTPDQERSAGDVVRAFKQS 1219


>gi|54295187|ref|YP_127602.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
 gi|53755019|emb|CAH16507.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
          Length = 589

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 82/367 (22%), Positives = 138/367 (37%), Gaps = 41/367 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N    + + +      +P+  Q   I  ILQ          I     G+GKT    + +
Sbjct: 11  FNFSSALNKALEDMKFITPSPIQAQTIPLILQGRD------AIALAQTGTGKTAAFALPI 64

Query: 315 AAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALER 370
              +    +  QA+I+AP   LA Q  E  +  ++    + + ++ G      + K L  
Sbjct: 65  LQNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRS 124

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATA 420
                A +++GT     D I    L        IL   DE  R G  + +   L +    
Sbjct: 125 ----GAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEK 180

Query: 421 PHVLLMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERL 475
             + L +AT P   R +  T L D    +I  + A  K I+   +  +   + D +I  L
Sbjct: 181 KQMALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVL 240

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +V   +G   +              +S  E    L +        IHG ++   +E ++ 
Sbjct: 241 EVEDYQGVIVFV-----------RTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIA 289

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +L+AT V   G+DV   + +I  +  H     +H++ GR GR       IL 
Sbjct: 290 QFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRI-GRTGRAGRSGVTILF 348

Query: 596 YHPPLSK 602
             P  S+
Sbjct: 349 VTPKESR 355


>gi|270159019|ref|ZP_06187675.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968]
 gi|289166145|ref|YP_003456283.1| ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A)
           [Legionella longbeachae NSW150]
 gi|269987358|gb|EEZ93613.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968]
 gi|288859318|emb|CBJ13253.1| putative ATP-dependent RNA helicase deaD (cold-shock DEAD-box
           protein A) [Legionella longbeachae NSW150]
          Length = 569

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 138/367 (37%), Gaps = 35/367 (9%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    + + +      +P+  Q   I  +L+          I     G+GKT    
Sbjct: 8   FAAFNFSDALNRALEDMKFTTPSPIQAQTIPLLLEGRD------AIALAQTGTGKTAAFA 61

Query: 312 IAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKA 367
           + +   + +   G QA+I+AP   LA Q  E  +  + N + I V ++ G      + K 
Sbjct: 62  LPILQNLSSSVHGTQALILAPTRELAIQVAEQFELLSANQRSITVAVLCGGQEYGRQLKQ 121

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQK 417
           L       A I++GT     D +    L        IL   DE  R G  + +   +++ 
Sbjct: 122 LRA----GAQIVVGTPGRILDHLDKGTLLLDNLRTFILDEADEMLRMGFIEDIETIMSKL 177

Query: 418 ATAPHVLLMTATPIPR--TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                + L +AT   R   +  T L +    +I  + A  K I+   +  +   +    L
Sbjct: 178 PEKKQIGLFSATMPHRIRQIANTYLHNPAAIEIRAETATVKSIEQRFLFASGHQKYDALL 237

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +V+  E  +   +  +         +S  E    + +        IHG ++   +E ++ 
Sbjct: 238 RVLAVEDYQGVIVFVRT--------KSSTEEVAEILQQQGLRAMAIHGDITQALRERIIA 289

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F+ G   +L+AT V   G+DV   + +I  +  H     +H++ GR GR       IL 
Sbjct: 290 QFRQGAIDILVATDVAARGLDVERVTHVINYDLPHDNETYVHRI-GRTGRAGRSGVAILF 348

Query: 596 YHPPLSK 602
             P   +
Sbjct: 349 VTPKEGR 355


>gi|312066551|ref|XP_003136324.1| RNA helicase [Loa loa]
 gi|307768519|gb|EFO27753.1| RNA helicase [Loa loa]
          Length = 952

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 161/433 (37%), Gaps = 44/433 (10%)

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI 251
            L+ K       +   + + P +   +  T+   +    +     +   + +R +   + 
Sbjct: 231 SLIAKGRQLPQTDHSKVYYRPFRKNFYVETAELAKITKKEVDEYREELDIRVRGKNCPKP 290

Query: 252 GIPINVEGKIAQKI--LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
                  G   + +  L+ + +  PT  Q  AI  I+           I     GSGKTL
Sbjct: 291 VRSWAQCGVEWKILSTLKKLEYKKPTPIQSQAIPAIISGRDV------IGIAKTGSGKTL 344

Query: 309 VALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
             L+ M   +          G  AVIM+P   LA Q ++   K+ +   I V  + G + 
Sbjct: 345 AFLLPMFRHILDQPELEEMDGPIAVIMSPTRELAMQTWKEANKFAKQLDIRVACVYGGVG 404

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRL 412
            + +   L+R     A +++ T     D +           ++  +++DE  R       
Sbjct: 405 ISDQIGDLKR----GAEVVVCTVGRLTDMLAANKGKVTNLRRVTYLVLDEADRMFDMGFE 460

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
               K            P  +T++ ++     +  +  K    KPI+ ++   + + + +
Sbjct: 461 PQVMKIVNNIR------PDRQTVLFSATFPRQMEALARKILD-KPIEIMVGGKSVVCDDV 513

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRM 525
            +  V+L E +K   +   +    E+     F    E+ + L      S    A +HG +
Sbjct: 514 NQNVVILEEHQKMLKLLELLGVYWENGNVLVFVDKQEKADDLVTQLMRSGYNCAPLHGGI 573

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              D++S +  +K G  KLL+AT+V   G+D+    +++  +  +     +H++ GR GR
Sbjct: 574 DQFDRDSTILDYKAGKIKLLVATSVAARGLDIKKLILVVNYDCPNHYEDYVHRV-GRTGR 632

Query: 586 GEEISSCILLYHP 598
                       P
Sbjct: 633 AGNKGYAYTFILP 645


>gi|5059027|gb|AAD38874.1|AF110007_1 p68 RNA helicase [Molgula oculata]
 gi|5059032|gb|AAD38877.1|AF110009_1 p68 RNA helicase [Molgula oculata]
          Length = 618

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 147/422 (34%), Gaps = 65/422 (15%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDI 284
           E  AY       +   L+RK   K                L    FS PT  Q     + 
Sbjct: 125 EVQAYYNEKHISVQGALVRKPIFKFEEAGFP---DYIYGTLSKQGFSDPTPIQAIGWPNA 181

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQ 336
           +           +     GSGKTL  ++     + A        G   +++ P   LAQQ
Sbjct: 182 MSGHD------CVGIAKTGSGKTLAFILPAIVHINAQPYLDPGDGPIVLVLCPTRELAQQ 235

Query: 337 HYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK-- 394
             +   ++  ++ I    + G   +  + + LER       I+I T     D ++  K  
Sbjct: 236 VQQVAAEFGSSSHIKNTCVYGGASKGPQLRDLERGCE----IVIATPGRLIDFLEQKKTN 291

Query: 395 ------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
                 L+L   D     G + +++           +    P  +TL+ ++    ++SK+
Sbjct: 292 LRRCTYLVLDEADRMLDMGFEPQIRKI---------ISQIRPDRQTLMWSATWPKEVSKL 342

Query: 449 TEKPAGRK-----------------PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
                G                    I  V  P+ + ++++  ++ ++ E +    I   
Sbjct: 343 AADFLGDFVHVQVGSTGLSANHNILQIVDVCQPMEKDEKLMRLMEEIMGESENKTIIFT- 401

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   +               IHG  S  +++ V++ F++G   +L+AT V 
Sbjct: 402 -------ETKRRCDELTRTMRRDGWPAMCIHGDKSQPERDWVLNEFRSGRSPILVATDVA 454

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D   +I  +        +H++ GR  R E+  +    +    +K +   +++L
Sbjct: 455 SRGLDVSDVKFVINYDFPSQCEDYVHRI-GRTARAEQKGTAYTFFTYDNAKQAKDLIAIL 513

Query: 612 KN 613
           + 
Sbjct: 514 QE 515


>gi|307611190|emb|CBX00835.1| hypothetical protein LPW_25391 [Legionella pneumophila 130b]
          Length = 589

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 82/367 (22%), Positives = 138/367 (37%), Gaps = 41/367 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N    + + +      +P+  Q   I  ILQ          I     G+GKT    + +
Sbjct: 11  FNFSSALNKALEDMKFITPSPIQAQTIPLILQGRD------AIALAQTGTGKTAAFALPI 64

Query: 315 AAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALER 370
              +    +  QA+I+AP   LA Q  E  +  ++    + + ++ G      + K L  
Sbjct: 65  LQNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRS 124

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATA 420
                A +++GT     D I    L        IL   DE  R G  + +   L +    
Sbjct: 125 ----GAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEK 180

Query: 421 PHVLLMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERL 475
             + L +AT P   R +  T L D    +I  + A  K I+   +  +   + D +I  L
Sbjct: 181 KQMALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVL 240

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +V   +G   +              +S  E    L +        IHG ++   +E ++ 
Sbjct: 241 EVEDYQGVIVFV-----------RTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIA 289

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +L+AT V   G+DV   + +I  +  H     +H++ GR GR       IL 
Sbjct: 290 QFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRI-GRTGRAGRSGVTILF 348

Query: 596 YHPPLSK 602
             P  S+
Sbjct: 349 VTPKESR 355


>gi|212710051|ref|ZP_03318179.1| hypothetical protein PROVALCAL_01104 [Providencia alcalifaciens DSM
           30120]
 gi|212687258|gb|EEB46786.1| hypothetical protein PROVALCAL_01104 [Providencia alcalifaciens DSM
           30120]
          Length = 468

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 87/461 (18%), Positives = 183/461 (39%), Gaps = 64/461 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + F + T  QE+A+  IL     +       Q   GSGKT    + +   ++A    
Sbjct: 29  LNELGFITMTPIQEAALPAILAGKDVR------AQAKTGSGKTAAFGLGLLQRIDAKNFN 82

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +    + +  + G +P + +R +L       AHI++
Sbjct: 83  TQSLVLCPTRELADQVANELRRLARYIPNLKILTLCGGVPFSVQRDSLVHA----AHILV 138

Query: 381 GTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRT 434
            T     D      +Q   L  +++DE  R                   +++ TP   +T
Sbjct: 139 ATPGRLLDHLHKETVQLDHLQTLVLDEADRMLDMGFADDIDA-------VISFTPEDRQT 191

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I+ I+++   + P+   I  +N + +V E+    ++   K   +   +  
Sbjct: 192 LLFSATWPDSIAAISQR-IQKNPLTIEINSVNELPDV-EQQFYEVARHDKIDLLQKLLSR 249

Query: 495 KK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           ++        +  +     +++L +    S+ ++HG M   D++  +  F NG+ ++L+A
Sbjct: 250 EQPASCVVFCNTKKDCQAVYDALMDS-NQSVLVLHGDMEQRDRDQTLVRFANGSSRVLVA 308

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+    ++I           +H++ GR  R  +    I L  P  ++ +   
Sbjct: 309 TDVASRGLDIKALEMVINFELSWDPEVHVHRI-GRTARAGKSGLAISLCSPEEAQRANVL 367

Query: 608 LSVLKNTED------GFLIAEEDLK-------------QRKEGEILG--IKQSGMPKFLI 646
             +L    +      G  I   + +              R  G+ILG    + G+    I
Sbjct: 368 EEMLNIKLNWLPVPTGLRITPLEAEMVTLCLDGGKKAKIR-PGDILGALTGEVGLQGDDI 426

Query: 647 AQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            +  +H   + + I +  A     Q      ++G+S+R  L
Sbjct: 427 GKIAIHPMHAYVAIKKSVANQAWKQL-QQGKIKGKSVRARL 466


>gi|27366603|ref|NP_762130.1| cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
 gi|37676317|ref|NP_936713.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|320158491|ref|YP_004190869.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
 gi|27358169|gb|AAO07120.1| Cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
 gi|37200858|dbj|BAC96683.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|319933803|gb|ADV88666.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
          Length = 641

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 140/369 (37%), Gaps = 35/369 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q +AI  +LQ       +  + +   G+GKT    + +   ++      QA+++A
Sbjct: 28  SPTPIQAAAIPHLLQG------VDALGKAQTGTGKTAAFSLPLLNKLDLAQRKPQAIVLA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   QN   + V  I G      + +AL       AH+I+GT    Q
Sbjct: 82  PTRELAIQVAAEMKNLGQNIRGLKVLEIYGGASIVDQMRAL----KNGAHVIVGTPGRVQ 137

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQR--LKLTQKATAPHVLLMTAT--PIPRTL 435
           D I   +L L  V        DE    G        +    ++   +L +AT  P+ + +
Sbjct: 138 DLINRERLDLGEVHTFVLDEADEMLNMGFVDDVTEIMEHAPSSAQRVLFSATMPPMLKNI 197

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           V   L D     +  K      +      +  +++     +++ +E   A  +  +    
Sbjct: 198 VERFLRDPVTVDVAGKNHTVDKVAQQFWVVKGVEKDEAMSRLLETEETDASIVFVRT--- 254

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+
Sbjct: 255 -----RQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGL 309

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   + +   +      + +H++ GR GR       ILL      +   T   V K++ 
Sbjct: 310 DVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRQGKAILLVRTNQIRMLRTIERVTKSSM 368

Query: 616 DGFLIAEED 624
           +   +   D
Sbjct: 369 EEIQLPLRD 377


>gi|251789631|ref|YP_003004352.1| ATP-dependent RNA helicase DbpA [Dickeya zeae Ech1591]
 gi|247538252|gb|ACT06873.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 457

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 164/457 (35%), Gaps = 56/457 (12%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + + T  Q +A+  IL     +       Q   GSGKT    + +   ++AG   
Sbjct: 18  LNELGYLTMTPIQAAALPAILAGKDVR------AQAKTGSGKTAAFGLGLLQHLDAGRFN 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +    I V  + G +P   +R +L        H+I+
Sbjct: 72  TQSLVLCPTRELADQVANELRRLARGMPNIKVLTLCGGVPFGLQRDSLTHA----PHVIV 127

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATP 430
            T     D ++           L+L   D     G        + Q  T    LL +AT 
Sbjct: 128 ATPGRLLDHLKKETVSLDDLRTLVLDEADRMLDMGFADAIDEVIAQVPTPCQTLLFSATW 187

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
                 ++     D   I        P              ++ L+ +LS  + A  +  
Sbjct: 188 PEAIAAISRRIQRDPLIIEIDTVDELPAVEQQFYEVSRSGKLDLLQKLLSREQPASCVV- 246

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  +  +     + +L      S+  +HG M   D++  +  F NG+ ++L+AT V
Sbjct: 247 -----FCNTKKDCQAVYEALTNS-NQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDV 300

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+    ++I           +H++ GR  R  E    I L  P  ++ +     +
Sbjct: 301 AARGLDIKALEMVINYELSWDPEVHVHRI-GRTARAGESGLAISLCAPEEAQRANALEEM 359

Query: 611 LKNTEDGFLIA-----------EEDLKQRK-------EGEILG--IKQSGMPKFLIAQPE 650
           LK   +   +               L            G+ILG      G+    I +  
Sbjct: 360 LKMKLNWHPLPTGLRITPLEAVMATLAIDGGKKAKMRPGDILGALTGDMGLDGADIGKIA 419

Query: 651 LH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +H   + + + +  A+H   Q      ++G+++++ L
Sbjct: 420 IHPMHAYVAVKQAVARHAWKQL-QQGKIKGKAVKVRL 455


>gi|307190551|gb|EFN74538.1| ATP-dependent RNA helicase DDX42 [Camponotus floridanus]
          Length = 769

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 138/401 (34%), Gaps = 46/401 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              +  + + I +N    PT  Q  A+   L           I     GSGKT   +  M
Sbjct: 259 FGFDDALMKTIRKNEYTQPTPIQAQAVPAALSGRD------IIGIAKTGSGKTAAFIWPM 312

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   +I+AP   L+QQ Y+  KK+ +   I V    G   +  + K
Sbjct: 313 LVHIMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSK 372

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK- 417
           ALE      A I++ T     D ++           L+L   D     G + +++     
Sbjct: 373 ALES----GAEIVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNH 428

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG--RKPIKTVII-----PINRID 469
                  LL +AT   +   L      D  +I +   G     +   +I     P  + +
Sbjct: 429 VRPDRQTLLFSATFKKKVEKLARDVLTDPIRIVQGDVGEANTDVTQHVIMFHNNPSGKWN 488

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            +++ L   LS G    ++            +   E   +  +     + ++HG M  I+
Sbjct: 489 WLLQNLVEFLSAGSLLIFV----------TKKLNAEELANNLKLKEFDVLLLHGDMDQIE 538

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +  V+ +FK      L+AT V   G+D+     ++  +         H++ GR GR  E 
Sbjct: 539 RNKVITAFKKKDVSTLVATDVAARGLDIPHIKTVVNYDVARDIDTHTHRI-GRTGRAGEK 597

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
                L      + +   +  L+        +  DL  +  
Sbjct: 598 GVAYTLVTEKDKEFAGHLVRNLEGANQEVSKSLMDLAMQSA 638


>gi|225450277|ref|XP_002267581.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 663

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 127/362 (35%), Gaps = 36/362 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
            PT  Q  AI   +           +     GSGKT      + + +  G          
Sbjct: 239 KPTPVQRHAIPISIAGRD------LMACAQTGSGKTAAFCFPIISGIMKGQYAQRPRGSR 292

Query: 322 ---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A+I++P   L+ Q ++  KK++  T + V +  G  P   + + LER       I
Sbjct: 293 TAYPLALILSPTRELSCQIHDEAKKFSYQTGVRVVVAYGGAPINQQLRDLER----GVDI 348

Query: 379 IIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T     D ++  ++ L +V     DE  R          Q       + M    + +
Sbjct: 349 LVATPGRLVDLLERARISLQMVQYLALDEADRMLDMGFEP--QIRRIVEQMDMPPRGVRQ 406

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    +I ++         I   +   ++   +++ L      G         + 
Sbjct: 407 TMLFSATFPKEIQRLASDFLA-NYIFLAVGRSDKRSHLMDLLHAQRENGTHGKQALTLV- 464

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   +               IHG  S  ++E  +  FK+G   +L+AT V   
Sbjct: 465 ---FVETKKGADALEHWLCINGFPATSIHGDRSQQEREHALRLFKSGATPILVATDVAAR 521

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   + ++  +  +     +H++ GR GR  +       ++   S  +     +++ 
Sbjct: 522 GLDIPHVAHVVNFDLPNDIDDYVHRI-GRTGRAGKTGLATAFFNENNSSLARGLAELMQE 580

Query: 614 TE 615
           + 
Sbjct: 581 SN 582


>gi|196012612|ref|XP_002116168.1| hypothetical protein TRIADDRAFT_30653 [Trichoplax adhaerens]
 gi|190581123|gb|EDV21201.1| hypothetical protein TRIADDRAFT_30653 [Trichoplax adhaerens]
          Length = 976

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 74/364 (20%), Positives = 138/364 (37%), Gaps = 41/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  AI  I+           I     GSGKTL  L+ M   +          G  
Sbjct: 328 KPTPVQAQAIPSIMSGRDV------IGIAKTGSGKTLAFLLPMFRHILDQNALSPGDGPI 381

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +IM P   LA Q     +++T+   + V  + G    + +   L+R     A I++ T 
Sbjct: 382 GLIMTPTRELAIQITRECRRFTKAIGMHVVCVYGGTGISEQIAELKR----GAEIVVCTP 437

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +           ++  +++DE  R           K      ++ +  P  +T+
Sbjct: 438 GRMIDMLLANNGRVTNLRRVTYLVLDEADRMFDMGFEPQVMK------IVESIRPDRQTV 491

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     +  +  K    KPI+  +   + +   IE+  V+++E  K   +   +   
Sbjct: 492 MFSATFPRQMEALARK-MLTKPIEIEVGGRSIVCSDIEQHVVIINEEDKFLKLLELLGLY 550

Query: 496 KESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +       F    E  + L +    +      +HG M   D++S +  +KNG  KLL+AT
Sbjct: 551 QPYGSVLVFVEKQESSDQLLKDLMKASYPCLSLHGGMDQSDRDSTIVDYKNGVIKLLVAT 610

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           +V   G+DV +  +++  +  +     +H+  GR GR         L      K +   +
Sbjct: 611 SVAARGLDVKNLILVVNYDCPNHYEDYVHR-AGRTGRAGNKGYAYTLITEDQGKYAGDII 669

Query: 609 SVLK 612
             L+
Sbjct: 670 RALE 673


>gi|163800537|ref|ZP_02194438.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
 gi|159175980|gb|EDP60774.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
          Length = 416

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 142/362 (39%), Gaps = 40/362 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-----AVI 326
           +PT  QE +I  IL+          +     G+GKT    + +  +V+   +     A+I
Sbjct: 25  TPTPVQEKSIPHILEGKD------LLAAAQTGTGKTAAFGLPIIQSVQQNKRDGAPKALI 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + + +Y+ NT + +  + G      ++K LE      A I+I T    
Sbjct: 79  LVPTRELAQQVMDNLIQYSANTNLNIVCVYGGTSIGVQKKKLEE----GADILIATPGRL 134

Query: 387 QDSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLV 436
            D +        +   L+L   D     G    L+  L +       +L +AT   R   
Sbjct: 135 LDHLFNGNVIIAKTGILVLDEADRMLDMGFWPDLQRILRRLPQDKQTMLFSATFEERIKT 194

Query: 437 LTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +         ++   PA      +K ++ P+++  +      ++ S   +   +  + ++
Sbjct: 195 IAYKLMDTPIEVEVSPANTTAENVKQMVYPVDKKRKRELLAYLIGSRNWQQVLVFTKTKQ 254

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             +       E    L      +++I +G  S   ++  +D FK G  + LIAT V   G
Sbjct: 255 GSD-------ELVKELKLDGIKAVSI-NGDKSQGARQRALDDFKEGKVRALIATDVAARG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+     ++  +        +H++ GR GR  +    + L    +S +    L+ ++N 
Sbjct: 307 LDIQALEQVVNFDLPFKAEDYVHRI-GRTGRAGKSGLAVSL----MSHDEEYLLTAIENL 361

Query: 615 ED 616
            D
Sbjct: 362 LD 363


>gi|148359886|ref|YP_001251093.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
 gi|296107936|ref|YP_003619637.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
           Alcoy]
 gi|148281659|gb|ABQ55747.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
 gi|295649838|gb|ADG25685.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
           Alcoy]
          Length = 589

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 82/367 (22%), Positives = 138/367 (37%), Gaps = 41/367 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N    + + +      +P+  Q   I  ILQ          I     G+GKT    + +
Sbjct: 11  FNFSSALNKALEDMKFITPSPIQAQTIPLILQGRD------AIALAQTGTGKTAAFALPI 64

Query: 315 AAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALER 370
              +    +  QA+I+AP   LA Q  E  +  ++    + + ++ G      + K L  
Sbjct: 65  LQNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRS 124

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATA 420
                A +++GT     D I    L        IL   DE  R G  + +   L +    
Sbjct: 125 ----GAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEK 180

Query: 421 PHVLLMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERL 475
             + L +AT P   R +  T L D    +I  + A  K I+   +  +   + D +I  L
Sbjct: 181 KQMALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVL 240

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +V   +G   +              +S  E    L +        IHG ++   +E ++ 
Sbjct: 241 EVEDYQGVIVFV-----------RTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIA 289

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +L+AT V   G+DV   + +I  +  H     +H++ GR GR       IL 
Sbjct: 290 QFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRI-GRTGRAGRSGVTILF 348

Query: 596 YHPPLSK 602
             P  S+
Sbjct: 349 VTPKESR 355


>gi|52842555|ref|YP_096354.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629666|gb|AAU28407.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 589

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 81/350 (23%), Positives = 134/350 (38%), Gaps = 41/350 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q   I  ILQ          I     G+GKT    + +   +    +  QA+I+A
Sbjct: 28  TPSPIQAQTIPLILQGRD------AIALAQTGTGKTAAFALPILQNLSPEISTTQALILA 81

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +  ++    + + ++ G      + K L       A +++GT     
Sbjct: 82  PTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRS----GAQVVVGTPGRIL 137

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PIP-RTL 435
           D I    L        IL   DE  R G  + +   L +      + L +AT P   R +
Sbjct: 138 DHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMALFSATMPYRIRQI 197

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEGKKAYWICPQI 492
             T L D    +I  + A  K I+   +  +   + D +I  L+V   +G   +      
Sbjct: 198 ANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVEDYQGVIVFV----- 252

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +S  E    L +        IHG ++   +E ++  FK G   +L+AT V  
Sbjct: 253 ------RTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            G+DV   + +I  +  H     +H++ GR GR       IL   P  S+
Sbjct: 307 RGLDVERVTHVINYDMPHDNETYVHRI-GRTGRAGRSGVTILFVTPKESR 355


>gi|109896747|ref|YP_660002.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109699028|gb|ABG38948.1| ATP-dependent RNA helicase CsdA [Pseudoalteromonas atlantica T6c]
          Length = 579

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 145/382 (37%), Gaps = 35/382 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N+  ++ Q + +     PT  Q   I  I++          +     G+GKT    + M
Sbjct: 12  LNLPAELLQALEKVGYEKPTPIQAQCIPLIMEGHD------LLGTAQTGTGKTAAFALPM 65

Query: 315 AAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALER 370
            A V+A     Q +++AP   LA Q  E  + Y   + ++ V  I G     ++ + L R
Sbjct: 66  LANVDANNSNTQLLVLAPTRELAIQVAEAFQVYASFSRKLNVLPIYGGSSYDNQIRQLRR 125

Query: 371 IAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLT--QKATA 420
                A +++GT     D I+           L+L   DE  R G    ++         
Sbjct: 126 ----GAQVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHAPAE 181

Query: 421 PHVLLMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               L +AT P P R +    L D    KI  K A    IK     +    ++    +++
Sbjct: 182 RQTALFSATMPDPIRKITKRYLSDPKQVKIESKVATASTIKQRYCQVAGHHKLEALTRIM 241

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
             E   A  I  + +        + +E    L     + +  ++G +    +E  ++  K
Sbjct: 242 EVEEFDAVIIFVRTKT-------ATMELSEKLSARGYA-VEPLNGDIPQNSRERTVERLK 293

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+AT V+  G+DV   S +I  +  +   + +H++ GR GR       IL    
Sbjct: 294 RGKIDILVATDVVARGLDVERVSHVINYDVPYDTESYVHRI-GRTGRAGRQGDAILFISH 352

Query: 599 PLSKNSYTRLSVLKNTEDGFLI 620
              +  ++     + + D   I
Sbjct: 353 REKRMLFSIERATRQSIDPMPI 374


>gi|315645365|ref|ZP_07898490.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315279407|gb|EFU42713.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 506

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 141/358 (39%), Gaps = 28/358 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q  AI  +L           +     G+GKT    + M   +             
Sbjct: 39  EPTPIQAQAIPAVLAGRD------LLGCAQTGTGKTAAFSVPMIQLLNEQPPKPGMARRI 92

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A++++P   LA Q  + +K Y+Q T++    I G + Q  + +AL++     A I+I T
Sbjct: 93  RALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERALQQ----GADILIAT 148

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D +   ++ L  V E        R+           ++       +TL  ++   
Sbjct: 149 PGRLLDLMNQKRIDLQHV-EILVLDEADRMLDMGFIHDVKRIISKMPSKKQTLFFSATMP 207

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------ 496
            +I+++  K   + P+K  I P++   E I++   +L  G K   +   +++        
Sbjct: 208 AEITQLV-KTLLQNPVKVEITPVSSTAERIKQSVYLLETGNKQKQLNELMKDPSIVSALV 266

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +  +   +R          +   IHG  S + +++ + +FK+G  ++L+AT +   GID
Sbjct: 267 FTRTKRGADRVVRDLTKVNITAQAIHGNKSQVSRQTALKNFKSGETRVLVATDIAARGID 326

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           + + S +I  N  +     +H++ GR GR     + I                ++  +
Sbjct: 327 IDELSHVINFNLPNIPETYVHRI-GRTGRAGLSGTAISFCEVDEIPFLRDIEKLIGKS 383


>gi|86145756|ref|ZP_01064085.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
 gi|85836455|gb|EAQ54584.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
          Length = 665

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 90/437 (20%), Positives = 169/437 (38%), Gaps = 47/437 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +   +   QA+IMA
Sbjct: 28  SPTPIQAAAIPLLLEGRD------ALGKAQTGTGKTAAFSLPLLNKINLNQHKPQAIIMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   ++   + V  I G      + +AL R     AHI++GT    +
Sbjct: 82  PTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRALSR----GAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDI 445
           D +   +L    +DE H F + +  ++ +      V  +L  A    + ++ ++     +
Sbjct: 138 DLLTRDRL---HLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPMV 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
             I ++   R P K  +   N   + + +   V+   +K   +   +E ++         
Sbjct: 195 KTIVDRYL-RNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V K+  +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSQMEEIQ 372

Query: 620 IAEED------LKQRKEGEILGIKQS-------GMPKFLIAQPELHDSLLEI---ARKDA 663
           + + D      + +    E+   K+S       G+   L    E+  + L      R+  
Sbjct: 373 LPQRDEVAAARVAKLGA-ELETEKESKALENFAGLISTLQESLEVDAATLAAMLLKRQQG 431

Query: 664 KH---ILTQDPDLTSVR 677
           K     + +DP + ++ 
Sbjct: 432 KSPLFYVGEDPMIAAIE 448


>gi|167547406|gb|ABZ82480.1| ATP-dependent DNA helicase [Pseudomonas corrugata]
          Length = 156

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 78/157 (49%), Positives = 104/157 (66%), Gaps = 2/157 (1%)

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G  +LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LL
Sbjct: 1   EFKAGALQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLL 60

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           YHPPLS+    RL +++ T DGF+IAE+DL+ R  GE+LG +Q+G+ +F +A       L
Sbjct: 61  YHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADL 120

Query: 656 LEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNE 692
           L   R  A+ +L + P+  S      R L +  QY +
Sbjct: 121 LPAVRDAAQALLERWPEHVSPL--LDRWLRHGQQYGQ 155


>gi|188589982|ref|YP_001922621.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251781234|ref|ZP_04824150.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188500263|gb|ACD53399.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243081681|gb|EES47742.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 526

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 77/359 (21%), Positives = 141/359 (39%), Gaps = 22/359 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGG 322
           + ++ F +P++ QE +I   L+          I Q   G+GKT      + + +    G 
Sbjct: 19  IDDLGFNTPSQIQEESIPVTLEGFD------LIGQAQTGTGKTAAYGCPILSRLNDTNGI 72

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + +KK ++  +  V  + G      + +AL +       I++GT
Sbjct: 73  KALILAPTRELAVQVNDELKKLSKYEKANVLPVYGGESIDRQIRALRKD---NIDIVVGT 129

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLTSLG 441
                D I    L L  VD       +    L          +++ TP   +TL+ ++  
Sbjct: 130 PGRVLDLINRKILKLNTVD--FLVLDEADEMLNMGFIDDIETIISNTPAERQTLLFSATM 187

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE---EKKES 498
              I+K+ +           I   +     IE+   +++   +   +C  ++        
Sbjct: 188 PAPIAKLAKNYMKADAKHVAIKRSSLTVSKIEQNYFMINNKHRLEALCRLLDLDNPSSAI 247

Query: 499 NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F    +  + L E        +  +HG MS + + + +  FK G+  LLIAT V   GI
Sbjct: 248 IFCRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLIATDVAARGI 307

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           DV   + +I  +      + +H++ GR GR     +   L  P           V K+T
Sbjct: 308 DVDGITHVINYDLPQDVESYVHRI-GRTGRANRTGTAYSLVSPKELGMLKQIQRVTKST 365


>gi|54298236|ref|YP_124605.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
 gi|53752021|emb|CAH13447.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
          Length = 589

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 81/367 (22%), Positives = 138/367 (37%), Gaps = 41/367 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N    + + +      +P+  Q   I  IL+          I     G+GKT    + +
Sbjct: 11  FNFSSALNKALEDMKFITPSPIQAQTIPLILEGRD------AIALAQTGTGKTAAFALPI 64

Query: 315 AAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALER 370
              +    +  QA+I+AP   LA Q  E  +  ++    + + ++ G      + K L  
Sbjct: 65  LQNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRS 124

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATA 420
                A +++GT     D I    L        IL   DE  R G  + +   L +    
Sbjct: 125 ----GAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEK 180

Query: 421 PHVLLMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERL 475
             + L +AT P   R +  T L D    +I  + A  K I+   +  +   + D +I  L
Sbjct: 181 KQMALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVL 240

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +V   +G   +              +S  E    L +        IHG ++   +E ++ 
Sbjct: 241 EVEDYQGVIVFV-----------RTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIA 289

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +L+AT V   G+DV   + +I  +  H     +H++ GR GR       IL 
Sbjct: 290 QFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRI-GRTGRAGRSGVTILF 348

Query: 596 YHPPLSK 602
             P  S+
Sbjct: 349 VTPKESR 355


>gi|302789414|ref|XP_002976475.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii]
 gi|300155513|gb|EFJ22144.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii]
          Length = 613

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 64/380 (16%), Positives = 128/380 (33%), Gaps = 53/380 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ AI   L           +     GSGKT      + A +             
Sbjct: 175 KPTPVQKHAIPISLHGRD------LMACAQTGSGKTAAFCFPIIAGILWNFPPGSRHARG 228

Query: 324 -------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                  A+I++P   L+ Q ++  KK+   T + V +I G      + K LER      
Sbjct: 229 SRKAFPLALILSPTRELSSQIHDEAKKFAYQTGVKVVVIYGGTSVQSQLKELER----GV 284

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK------LTQKATAPH 422
            I++ T     D +Q  +        L L   D     G + +++               
Sbjct: 285 DILVATPGRLDDLMQRGRISLSLVRYLALDEADRMLDMGFEPQIRKIVENTDMPPPGQRQ 344

Query: 423 VLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKT---VIIPINRIDEVIERLKV 477
            +L +AT     + L    L +     +    +    I      +  +++   +++ +  
Sbjct: 345 TMLFSATFPREIQRLAADFLYNYIFLAVGRVGSSTDLIVQRVEYVHDVDKRSMLMDMIHA 404

Query: 478 VLSEG--KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
               G   +   I   +E       +   +           S   IHG  + +++E  + 
Sbjct: 405 QKPNGLNGQLPLILVFVET------KRGADSLEDWLIQMGISATTIHGDRTQVEREHALR 458

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SF+ G   +L+AT V   G+D+   + +I  +        +H++ GR GR  +       
Sbjct: 459 SFRTGVTPILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRI-GRTGRAGKSGFATAF 517

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           +    +  +   + +++   
Sbjct: 518 FTDKDTSLARPLVDLMQEAN 537


>gi|329666667|gb|AEB92615.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 479

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 74/348 (21%), Positives = 134/348 (38%), Gaps = 39/348 (11%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE  I  +L+          I Q   G+GKT    + +   ++      QA+
Sbjct: 15  GFEEATPIQEKTIPLVLE------EKDVIGQAQTGTGKTAAFGLPILQNLDKQHDSIQAI 68

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E + +  ++ +  V+++ G      + +AL++       I++GT   
Sbjct: 69  IIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQ----TPAILVGTPGR 124

Query: 386 FQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D ++           ++L   DE    G  Q +           +L  A+   +TL+ 
Sbjct: 125 LLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDI---------ESILKYASSKHQTLLF 175

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I +I EK     P    I        +I++  V   E +K   +C  I+ +  
Sbjct: 176 SATMPKPILRIGEKFMN-DPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLIDVQNP 234

Query: 497 --ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L     +     A IHG +S   + SV+  F+ G   +L+AT V 
Sbjct: 235 DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVA 294

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+   S +   +      + +H++ GR GR  +    +    P 
Sbjct: 295 ARGLDISGVSHVYNYDIPQDPDSYVHRI-GRTGRAGQNGMSVTFVTPN 341


>gi|303238769|ref|ZP_07325301.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593648|gb|EFL63364.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 544

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 83/400 (20%), Positives = 150/400 (37%), Gaps = 49/400 (12%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
               QK + ++ F   T  Q   I  IL+ +        I Q   G+GKT    I     
Sbjct: 12  SDEIQKAIADMGFEEATPIQSQTIPQILKGID------LIGQAQTGTGKTCAFGIPAIEM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAH 373
           ++    G Q +I++P   LA Q  E ++  ++    I +  + G  P   +  AL++   
Sbjct: 66  LDPQNEGIQVLILSPTRELAIQISEELRDVSKYKEGIKILPVYGGQPIDRQIAALKK--- 122

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLL 425
            +  IIIGT     D ++   L L  +        DE    G ++ +           +L
Sbjct: 123 -RPQIIIGTPGRIMDHMRRRTLKLADLKMLILDEADEMLNMGFREDI---------DTIL 172

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
                  +T++ ++    +I  +T K   + P+             IE+  + +S+  K 
Sbjct: 173 EKVPEEKQTILFSATMPKEILDLTSKYL-KNPLHIKAAHKQMTVPSIEQFYLEVSQSSKL 231

Query: 486 YWICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +   I+           N +  V+   S  +    S   +HG M    +  VM  F+ 
Sbjct: 232 EILSRLIDANNIGLSLVFCNTKRQVDELTSSLQSRGYSTEALHGDMKQDQRNRVMTKFRK 291

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +LIAT V   GIDV +   +   +        +H++ GR GR  +           
Sbjct: 292 GQIDILIATDVAARGIDVDNVEAVFNYDLPSDEEYYVHRI-GRTGRAGKTGKSFTFV--- 347

Query: 600 LSKNSYTRLSVLKNTEDGFLI-----AEEDLKQRKEGEIL 634
           + +  +    + + T+    +     A  D+++RK G IL
Sbjct: 348 VGREIHKLKDIQRYTKSTIHLIKPPTAM-DVEERKIGLIL 386


>gi|296234835|ref|XP_002762632.1| PREDICTED: ATP-dependent RNA helicase DDX3Y [Callithrix jacchus]
          Length = 656

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 141/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA------------AAVEA 320
           PT  Q+ AI  I      K +   +     GSGKT   L+ +              AV+ 
Sbjct: 199 PTPVQKHAIPII------KGKRDLMACAQTGSGKTAAFLLPILSQMYTDGPGEALKAVKG 252

Query: 321 GGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            G+         ++++AP   LA Q YE  +K++  +++   ++ G      +   LE  
Sbjct: 253 NGRYGHSKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGANIGQQIGDLEH- 311

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP-- 421
                H+++ T     D ++  K        L+L   D     G + +++   +      
Sbjct: 312 ---GCHLLVATPGRLVDMMERRKIALDFCKYLVLDEADRMLDMGFEPQIRRIVEQDCMPP 368

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  +D+    
Sbjct: 369 KGVRHTMMFSAT-FPKKIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDK-RSF 426

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L    +   I   +  KKE +             H   +   IHG  S   +E  +
Sbjct: 427 LLDLLGATGRDSLILVFVVTKKEVDS------LEEFLYHEGYACTSIHGDRSQRAREEAL 480

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 481 RQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRI-GRTGRAGNLGLATS 539

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 540 FFNEKNVNIAKDLLDLLVE 558


>gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
 gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
          Length = 523

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 130/363 (35%), Gaps = 35/363 (9%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           + ++ +   T  Q   I  +L           I Q   G+GKT    + +   ++     
Sbjct: 16  ITSVGYEEATPIQAETIPMVLAGQDV------IGQAQTGTGKTAAFALPILEKIDKSNEN 69

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA++++P   LA Q  E I K  +  +  V+++ G      + K+L         +++G
Sbjct: 70  VQALVVSPTRELAIQTQEEIYKLGRTERANVQVVYGGADIRRQIKSL----KNHPQVVVG 125

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPI 431
           T     D I+ + L L  V        DE    G        + Q       +L +AT  
Sbjct: 126 TPGRLLDHIRRHTLKLDHVQMLVLDEADEMLNMGFLDDIEDIIKQLPEERQTMLFSATMP 185

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P    + +  + D    KI  K      I    +     ++     +    +      + 
Sbjct: 186 PEIKRVGVQFMKDPKHVKIKAKELTTDLIDQFYVRSRDFEKFDVMTRFFDVQSPDLTIVF 245

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +  V+   S  E    + A IHG ++   +  +M+ F++G   +L+AT 
Sbjct: 246 TRT--------KRRVDEIASGLEARGYNAAGIHGDLTQKRRTQIMNDFRHGKLDILVATD 297

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ D + +   +      + +H++ GR GR  +    +    P           
Sbjct: 298 VAARGIDINDVTHVYNYDIPQDPDSYVHRV-GRTGRAGKHGVSMTFVTPNEMDYLREIEK 356

Query: 610 VLK 612
           + K
Sbjct: 357 LTK 359


>gi|195326619|ref|XP_002030023.1| GM24798 [Drosophila sechellia]
 gi|194118966|gb|EDW41009.1| GM24798 [Drosophila sechellia]
          Length = 786

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 79/398 (19%), Positives = 146/398 (36%), Gaps = 50/398 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              + ++ + + +     PT  Q  A+   L           I     GSGKT   +  M
Sbjct: 271 FGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRD------IIGIAKTGSGKTAAFIWPM 324

Query: 315 AAAVEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              V    Q         +I+AP   L+ Q Y   KK+ +   + V    G   +  + K
Sbjct: 325 LMHVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSK 384

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK- 417
           ALE+     A II+ T     D ++           L+L   D     G + +++     
Sbjct: 385 ALEQ----GAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNH 440

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITE---KPAGRKPIKTVII---PINRIDE 470
                  L+ +AT   R   L      D  +I +     A +   ++V +   P+ + + 
Sbjct: 441 VRPDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNW 500

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           ++  L   LSEG    ++  +++ +  SN   + E           +  ++HG M   D+
Sbjct: 501 LLCHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKE----------YNCLLLHGDMDQADR 550

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             V+  FK   C +L+AT V   G+D+     ++  +         H++ GR GR  E  
Sbjct: 551 NKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRI-GRTGRAGEKG 609

Query: 591 SCILLYHPPLSKNSYTRLSVLKNT-----EDGFLIAEE 623
           +   L      + +   +  L+       +D   +A +
Sbjct: 610 NAFTLVTDKDKEFAGHLVRNLEGADQVVPDDLMELAMK 647


>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 536

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 88/437 (20%), Positives = 164/437 (37%), Gaps = 60/437 (13%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           +  + F   T  Q  +I   L           I Q   G+GKT    + +   +    + 
Sbjct: 17  ITELGFEEATPIQSQSIPIALTGRD------MIGQAQTGTGKTAAFGLPLIHKIAKEEER 70

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             ++IM P   LA Q  E I K ++   I    I G      + +AL++    +  IIIG
Sbjct: 71  IVSLIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQIRALKK----KPQIIIG 126

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I    + L  V        DE    G  + +           +L       +
Sbjct: 127 TPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDI---------QSILKLVPEERQ 177

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++    +I K+  +   + P    +IP +    +I++  + + E +K   +   ++
Sbjct: 178 TLLFSATMPANIQKLASQFL-KDPEHVSVIPKHVSAPLIDQAYIEVPERQKFEALSRLLD 236

Query: 494 EKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           +  V+      +    S   +HG +S   +++VM  F++G+  +L+A
Sbjct: 237 MESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVA 296

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN---- 603
           T V   G+DV   + ++  +      + +H++ GR GR  +  +      P    +    
Sbjct: 297 TDVAARGLDVSGVTHVVNFDLPQDPESYVHRI-GRTGRAGKEGTAWSFVTPREMDHLYFI 355

Query: 604 --------SYTRLSVLKNTEDGFL--IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
                       L  +    +G    IAE  L+  ++GE+     +      I   E +D
Sbjct: 356 ERVTRHRIPRKPLPTIAEAIEGKQRIIAERVLEIIEQGEL-----TEYKGLAIQLLEQYD 410

Query: 654 SLLEIARKDAKHILTQD 670
           S+  +A   A  ILT D
Sbjct: 411 SVQLLA--AAMKILTGD 425


>gi|195111735|ref|XP_002000433.1| GI10230 [Drosophila mojavensis]
 gi|193917027|gb|EDW15894.1| GI10230 [Drosophila mojavensis]
          Length = 801

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 67/380 (17%), Positives = 135/380 (35%), Gaps = 50/380 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---------EAGG 322
            PT  Q+ AI  I+           +     GSGKT   L+ +   +         ++  
Sbjct: 312 KPTPVQKYAIPIIISGRD------LMACAQTGSGKTAAFLVPILNQMYELGLSAPPQSNR 365

Query: 323 Q---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           Q          +++AP   LA Q +E  KK+   +++   ++ G    + + + L+R   
Sbjct: 366 QYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDR--- 422

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+I+ T    +D I   K+ L  +     DE  R          Q       L M  
Sbjct: 423 -GCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEP--QIRRIVEQLNMPP 479

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++     I ++         I   +  +    E I +  + + +  K  ++
Sbjct: 480 TGQRQTLMFSATFPKQIQELASDFLS-NYIFLAVGRVGSTSENITQTILWVYDQDKRSYL 538

Query: 489 CPQIEEKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
              +   ++                +   +            +  IHG  +  ++E  + 
Sbjct: 539 LDLLSSIRDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALR 598

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G C +L+AT V   G+D+   + +I  +        +H++ GR GR   +      
Sbjct: 599 CFRSGDCPILVATAVAARGLDIPHVTHVINFDLPTDVEEYVHRI-GRTGRMGNLGVATSF 657

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           ++          L +L  T+
Sbjct: 658 FNDKNRNICSDLLELLIETK 677


>gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 597

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 75/364 (20%), Positives = 137/364 (37%), Gaps = 40/364 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
           +P+  Q + I  ++           +     G+GKT    I + + +E           Q
Sbjct: 39  TPSPIQAATIPPLMAGRDV------VGLAQTGTGKTAAFAIPILSRLEGAGDGSGPRKPQ 92

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           A+++AP   LA Q  E   +Y+ +   + V  I G      +   L R     A +I+GT
Sbjct: 93  ALVLAPTRELALQVAEAFGRYSAHMPEVRVLPIYGGQSYGVQLAGLRR----GAQVIVGT 148

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI- 431
                D +    L        +L   DE    G  + +   L +      V L +AT   
Sbjct: 149 PGRVIDHLDRGTLDISELRFLVLDEADEMLTMGFAEDVERILAETPDDKQVALFSATMPS 208

Query: 432 -PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             R L    L D     +  K A  + I    + ++   ++    + +  E   A  +  
Sbjct: 209 AIRRLAQRYLNDPQEITVKSKTATAQNITQRYLQVSHQRKLDALTRFLEVETFDAMIVFV 268

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           + ++  E       E    L     S++AI +G M+   +E  ++  K+G   +L+AT V
Sbjct: 269 RTKQATE-------ELAEKLRSRGFSAVAI-NGDMAQAQRERTINQLKSGGIDILVATDV 320

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV   S ++  +  H   + +H++ GR GR     + +L   P       +    
Sbjct: 321 AARGLDVDRISHVVNYDIPHDTESYVHRI-GRTGRAGRAGNALLFVSPRERHLLRSIERA 379

Query: 611 LKNT 614
            ++T
Sbjct: 380 TRST 383


>gi|149278660|ref|ZP_01884796.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
 gi|149230655|gb|EDM36038.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
          Length = 435

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 129/361 (35%), Gaps = 38/361 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  QE +I  IL           +     G+GKT    I M   +    Q        
Sbjct: 23  QPTPIQEQSIPTIL------TSRDLLGCAQTGTGKTAAFAIPMLQLLNKEHQNAKGPRPI 76

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   LA Q  E  K Y +N  +   +I G + Q  +  AL R       I+I T
Sbjct: 77  RALVLTPTRELAIQIEESFKAYGRNLSLRHLVIFGGVGQKAQTDALHR----GVDILIAT 132

Query: 383 HALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      I    + + ++DE  R      +   +K       +       +TL  
Sbjct: 133 PGRLLDLMNQGFINLKDIEIFVLDEADRMLDMGFIHDVKKT------IAKLPAKRQTLFF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I K+        P+K  + P++   E IE++   + +G K   +   +++K  
Sbjct: 187 SATMPPEIQKLANT-ILVDPLKVEVTPVSSTAEKIEQMIYFVEKGDKKNLLIHILQDKTI 245

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   +R              IHG  S   ++  + +FK  T ++L+AT + 
Sbjct: 246 QTALVFTRTKHGADRVVKDLIKVGVKAEAIHGNKSQNARQRALTNFKAKTTRILVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV + + +I     +     +H++ GR GR                +       ++
Sbjct: 306 ARGIDVDELTHVINYELPNIPETYVHRI-GRTGRAGNSGISFSFCDGEEKEFLDDIEKLI 364

Query: 612 K 612
            
Sbjct: 365 A 365


>gi|49475435|ref|YP_033476.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
 gi|49238241|emb|CAF27451.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
          Length = 467

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 75/364 (20%), Positives = 133/364 (36%), Gaps = 47/364 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q   I  +LQ      R   +     G+GKT   ++ M   +E G       + +I
Sbjct: 29  PTPIQSGTIPHVLQ------RRDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTLI 82

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   KY  N ++ V ++ G +    + + LER       ++I T    
Sbjct: 83  LEPTRELAAQVEENFDKYGINHRLNVALLIGGVSFEQQDRKLER----GVDVLIATPGRL 138

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRT-- 434
            D  +  KL+L+ V     DE  R      +   ++           L  +AT  P    
Sbjct: 139 LDHFERGKLLLMGVEILVIDEADRMLDMGFIPEIERICKLTPFTRQTLFFSATMAPEITK 198

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIP-----INRIDEVIERLKVVLSEGKKAYWIC 489
           L    L      ++T+  +    I   ++       ++   + E +     + K A   C
Sbjct: 199 LTKQFLHSPVTVEVTKASSTASTITQRLVKSGNKAWDKRAVLRELIHNEGDKLKNAIIFC 258

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         R + E   SL  H   S+  +HG M    + S +  FK+    LL+A+ 
Sbjct: 259 NR--------KRDISELLRSLIRH-NFSVGALHGDMDQYSRMSTLADFKDNKITLLVASD 309

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+   S +   +        +H++ GR GR         +     +K     ++
Sbjct: 310 VAARGLDIPAVSHVFNYDVPTHAEDYIHRI-GRTGRANRSGKAFTIV----TKTDQKYIN 364

Query: 610 VLKN 613
            ++ 
Sbjct: 365 AIEE 368


>gi|285018817|ref|YP_003376528.1| ATP-dependent RNA helicase (cold-shock dead box protein)
           [Xanthomonas albilineans GPE PC73]
 gi|283474035|emb|CBA16536.1| probable atp-dependent rna helicase (cold-shock dead box protein)
           [Xanthomonas albilineans]
          Length = 657

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 136/369 (36%), Gaps = 35/369 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SP+  Q + I  +L           + Q   G+GKT    + + + ++      QA+++A
Sbjct: 31  SPSPIQAATIPALLTGRD------LLGQAQTGTGKTAAFALPILSRLDFAQRKPQALVLA 84

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y        V  + G  P   +  AL+R      H+++GT     
Sbjct: 85  PTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSALKR----GVHVVVGTPGRVI 140

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPI--PRTL 435
           D +            L+L   DE  R G    ++  L +   +  V L +AT     + +
Sbjct: 141 DHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPQSRQVALFSATMPAAIKRI 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E   A  I  +    
Sbjct: 201 AQTYLNDPAEVIIASKTTTSANIRQRYWAVSGLHKLDALTRILEVEPFDAMIIFART--- 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  +      +    + A I+G +    +E V+   K+G   +L+AT V   G+
Sbjct: 258 -----KAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDILVATDVAARGL 312

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P             +   
Sbjct: 313 DVERISHVLNYDIPYDTESYVHRI-GRTGRAGRSGEAILFVSPRERGMLRAIERATRQPI 371

Query: 616 DGFLIAEED 624
           +   +   D
Sbjct: 372 EEMQLPSVD 380


>gi|86750102|ref|YP_486598.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
 gi|86573130|gb|ABD07687.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
          Length = 516

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 125/343 (36%), Gaps = 28/343 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI  +L       R   +     G+GKT   ++ M   +E G       + +
Sbjct: 23  TPTPIQEQAIPHVLA------RRDVLGIAQTGTGKTAAFVLPMLTMLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D  +   L+L  V E        R+           +        +TL  T+    +I
Sbjct: 133 LLDHTERGGLLLTGV-EMLIIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFTATMPPEI 191

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKE------ 497
            ++TE      P K  +         + + +V       +K   +   I    +      
Sbjct: 192 RRVTETFL-HNPEKIEVSKPASTAVTVAQSQVACGREPHEKRETLRSLIRAATDLQNAII 250

Query: 498 -SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V       +    S+  +HG M    + + +D F+ G   +L+A+ V   G+D
Sbjct: 251 FCNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPILVASDVAARGLD 310

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           + + S +   +  H     +H++ GR GR   + + I +  P 
Sbjct: 311 IPEVSHVFNFDVPHHPDDYVHRV-GRTGRAGRLGTAISIVAPS 352


>gi|328779158|ref|XP_001122489.2| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
           mellifera]
          Length = 616

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 78/366 (21%), Positives = 143/366 (39%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L        M+ I Q   GSGKTL  ++     +          G  
Sbjct: 132 EPTAIQAQGWPIAL----SGRDMVGIAQ--TGSGKTLAYILPAIVHINHQPRLNRNDGPI 185

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LAQQ  +    +  ++Q+    I G  P+  + + LER       I I T 
Sbjct: 186 ALILAPTRELAQQIQQVASDFGISSQVRNTCIFGGAPKGPQARDLER----GVEICIATP 241

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G + +++    Q       L+ +AT    
Sbjct: 242 GRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKE 301

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I   +  A    ++ V +     +  ++++ L+ + +E +    
Sbjct: 302 VRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKEGKLMKLLEEISNEPENKTI 361

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I  + +       R V +   +++ +   +I I HG  S  +++ V++ F+N    +L+A
Sbjct: 362 IFVETK-------RKVDDITRAINRYGWQAIGI-HGDKSQQERDYVLNQFRNSRSAILVA 413

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +        +H++ GR GR +   +    + P  +  +   
Sbjct: 414 TDVAARGLDVEDVKFVINLDYPSNSEDYVHRI-GRTGRSQRTGTAYAFFTPGNAHKASDL 472

Query: 608 LSVLKN 613
           + VL+ 
Sbjct: 473 IQVLEE 478


>gi|256088557|ref|XP_002580397.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665967|emb|CAZ36636.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 1500

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 94/448 (20%), Positives = 166/448 (37%), Gaps = 45/448 (10%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI- 251
            LQKK      +   I + P RK    E    A+      +     +  + +R +   +  
Sbjct: 746  LQKKDKLQPIDHSKIEYFPFRKNFYVEVPELAKMSKEDVKAYRASLENIRVRGRECPKPL 805

Query: 252  --GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
               +   +  ++   + RN    PT  Q  A+  I+        M+ I     GSGKTL 
Sbjct: 806  RNWVQAGISSRLLACLKRNNFDKPTPIQCQALPVIM----SGRDMIGI--AKTGSGKTLA 859

Query: 310  ALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
             L+ +   +E         G  A+++AP   LA Q ++  KK  Q        + G    
Sbjct: 860  FLVPLMRHLEHQAPLNPGDGPIALLLAPTRELALQIFKETKKLCQAADARAVCVYGGTGI 919

Query: 362  AHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLK 413
            + +   L+R     A II+ T     D +          ++   V++DE  R        
Sbjct: 920  SEQIAELKR----GAEIIVCTPGRMIDMLAANGGRVTNLHRCSYVVLDEADRMFDLGFEP 975

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                      ++    P  +TL+ ++     +  +  K     PI+  I   + +   +E
Sbjct: 976  QVM------RIIENCRPDRQTLMFSATFPRQMEILARKVLTL-PIEIQIGGRSVVCSDVE 1028

Query: 474  RLKVVLSEGKKAYWICPQI----EEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMS 526
            +   +LSE +K Y +   +    EE     F    E  + L             +HG + 
Sbjct: 1029 QHAFILSEEEKVYKVLELLGIYQEEGSVLVFVEKQESADELMRVLLKYGYPCLSLHGGID 1088

Query: 527  DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              D++SV+  FK G  +LLIAT+V   G+DV D  ++I  +  +     +H+  GR GR 
Sbjct: 1089 QYDRDSVIMDFKRGNIRLLIATSVAARGLDVTDLLLVINYDCPNHYEDYVHR-CGRTGRA 1147

Query: 587  EEISSCILLYHPPLSKNSYTRLSVLKNT 614
                       P   +++   +   K +
Sbjct: 1148 GRKGFAYTFLTPDQERSAGDVVRAFKQS 1175


>gi|282600167|ref|ZP_05973223.2| ATP-independent RNA helicase DbpA [Providencia rustigianii DSM
           4541]
 gi|282566628|gb|EFB72163.1| ATP-independent RNA helicase DbpA [Providencia rustigianii DSM
           4541]
          Length = 476

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 86/462 (18%), Positives = 170/462 (36%), Gaps = 66/462 (14%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + F + T  QE+A+  IL     +       Q   GSGKT    + +   ++A    
Sbjct: 37  LNELGFLTMTPIQEAALPAILAGQDVR------AQAKTGSGKTAAFGLGLLQHIDAKNFN 90

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +    + +  + G +P + +R +L       AH+I+
Sbjct: 91  TQSLVLCPTRELADQVANELRRLARYIPNLKILTLCGGVPFSVQRDSLAHA----AHVIV 146

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            T     D +            L+L   D     G    +                    
Sbjct: 147 ATPGRLLDHLHKETVNLDHLQTLVLDEADRMLDMGFSDEIDAIISFAPHQ---------R 197

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I+ I+++     P    I  +N + +V E+    ++   K   +   +
Sbjct: 198 QTLLFSATWPESIADISQR-IQNNPQTIEINSVNELPDV-EQQFYEVARHDKIELLQKLL 255

Query: 493 EEKKESNFRSVVERFNSLHEHFTS------SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              + ++              F +      S+ ++HG M   D++  +  F NG+ ++L+
Sbjct: 256 SRDQPASCVIFCNTKKDCQAVFDALNDSKQSVLVLHGDMEQRDRDQTLVRFANGSSRVLV 315

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+    ++I           +H++ GR  R  +    I L  P  ++ +  
Sbjct: 316 ATDVASRGLDIKALEMVINFELSWDPEVHVHRI-GRTARAGQSGLAISLCSPEEAQRANA 374

Query: 607 RLSVLKNTED------GFLIA--EEDL-----------KQRKEGEILG--IKQSGMPKFL 645
              +L    +      G  I   E D+           K R  G+ILG      G+    
Sbjct: 375 LEEMLNMKLNWLPEPTGLRITPLEADMVTLCLDGGKKAKIR-PGDILGALTGDVGLQGDD 433

Query: 646 IAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           I +  +H   + + I +  A            ++G+S+R  L
Sbjct: 434 IGKITIHPIHAYVAIKKSVANQAWKHL-QQGKIKGKSVRARL 474


>gi|150396691|ref|YP_001327158.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150028206|gb|ABR60323.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae
           WSM419]
          Length = 499

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 76/363 (20%), Positives = 139/363 (38%), Gaps = 42/363 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI   LQ      R   +     G+GKT   ++ M   +E G       + +I
Sbjct: 25  PTPIQIGAIPPALQ------RRDILGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTLI 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   KY +N ++ + ++ G +    + + LER     A ++I T    
Sbjct: 79  LEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLER----GADVLICTPGRL 134

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--RT 434
            D  +  KL++  V     DE  R      +   ++           L  +AT  P  + 
Sbjct: 135 LDHCERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSATMPPEIQK 194

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK----KAYWICP 490
           L    L + +  ++  + +    +   ++  +  D     +   L   +     A   C 
Sbjct: 195 LADRFLQNPERVEVARRSSTAITVTQRLVAAHGKDYEKRAVLRELIRSQEDLKNAIIFCN 254

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         + V E F SL  H   S+  +HG M    + +++ +FK+G  KLL+A+ V
Sbjct: 255 R--------KKDVAELFRSLDRHG-FSVGALHGDMDQRSRMAMLANFKDGNIKLLVASDV 305

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D S +   +        +H++ GR GR     +   +      K +     +
Sbjct: 306 AARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGASFTIVTKRDIKFADAIEKL 364

Query: 611 LKN 613
           +  
Sbjct: 365 IGQ 367


>gi|73965227|ref|XP_861717.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 9 [Canis
           familiaris]
          Length = 620

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 90/446 (20%), Positives = 158/446 (35%), Gaps = 69/446 (15%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVETY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 216

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 217 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 334 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 385

Query: 536 SFKNGTCKLLIATTVIEVGI------DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
            FK+G   +LIAT V   G+      +V D   +I  +  +     +H++ GR  R  + 
Sbjct: 386 EFKHGKAPILIATDVASRGLAFYKLVNVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKT 444

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTE 615
            +    + P   K     +SVL+   
Sbjct: 445 GTAYTFFTPNNIKQVSDLISVLREAN 470


>gi|77461469|ref|YP_350976.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf0-1]
 gi|77385472|gb|ABA76985.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf0-1]
          Length = 478

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 177/454 (38%), Gaps = 52/454 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ +   T  Q  ++  IL+ M        I Q   GSGKT    I +   +     G
Sbjct: 38  LDSLGYAQMTPIQAQSLPVILKGMD------LIAQAKTGSGKTAAFGIGLLNPINPRYFG 91

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    I V  + G +    +  +LE      AHII+
Sbjct: 92  CQALVICPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIGSLEH----GAHIIV 147

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q  ++   L+L  ++        + L +        ++  T     +TL+ ++ 
Sbjct: 148 GTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIEQTPAR-RQTLLFSAT 206

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
             + I ++  K       +TV       D  IE+    +S  ++   +   +   +    
Sbjct: 207 YPVGIKQLASKFMRDP--QTVKAEAFHDDTQIEQRFYEISPEERMSAVTKVLHHFRPAST 264

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + V E  + L     S++ + HG +   D++ V+  F N +  +L+AT V   
Sbjct: 265 VAFCFTKQQVQETVDHLTSKGISAVGL-HGDLEQRDRDQVLAMFANRSTSVLVATDVAAR 323

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK- 612
           G+D+    ++I           +H++ GR GR  E    + L  P  +  +     + K 
Sbjct: 324 GLDIDALDMVINVELARDSEIHIHRV-GRTGRAGEKGIAVSLVAPSEAHRAQAIEQLQKT 382

Query: 613 ----------NTEDG---------FLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPEL 651
                      ++ G           IA     + + G+ILG    ++G+P   + +  +
Sbjct: 383 PLNWDQVDNLKSQGGAPLQPPMSTLCIAGGRKDKVRPGDILGALTGEAGIPGAQVGKIAI 442

Query: 652 HD--SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            D  S + + R      L +  +   ++G+S+R+
Sbjct: 443 FDFQSYVAVERTVVMQALQRLNN-GKIKGRSLRV 475


>gi|195552710|ref|XP_002076525.1| GD17585 [Drosophila simulans]
 gi|194202136|gb|EDX15712.1| GD17585 [Drosophila simulans]
          Length = 786

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 79/398 (19%), Positives = 146/398 (36%), Gaps = 50/398 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              + ++ + + +     PT  Q  A+   L           I     GSGKT   +  M
Sbjct: 271 FGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRD------IIGIAKTGSGKTAAFIWPM 324

Query: 315 AAAVEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              V    Q         +I+AP   L+ Q Y   KK+ +   + V    G   +  + K
Sbjct: 325 LMHVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSK 384

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK- 417
           ALE+     A II+ T     D ++           L+L   D     G + +++     
Sbjct: 385 ALEQ----GAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNH 440

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITE---KPAGRKPIKTVII---PINRIDE 470
                  L+ +AT   R   L      D  +I +     A +   ++V +   P+ + + 
Sbjct: 441 VRPDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNW 500

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           ++  L   LSEG    ++  +++ +  SN   + E           +  ++HG M   D+
Sbjct: 501 LLCHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKE----------YNCLLLHGDMDQADR 550

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             V+  FK   C +L+AT V   G+D+     ++  +         H++ GR GR  E  
Sbjct: 551 NKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRI-GRTGRAGEKG 609

Query: 591 SCILLYHPPLSKNSYTRLSVLKNT-----EDGFLIAEE 623
           +   L      + +   +  L+       +D   +A +
Sbjct: 610 NAFTLVTDKDKEFAGHLVRNLEGADQLVPDDLMELAMK 647


>gi|266619246|ref|ZP_06112181.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
 gi|288869241|gb|EFD01540.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
          Length = 432

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 131/355 (36%), Gaps = 28/355 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +P+  QE AI  +L           +     G+GKT    + +   +             
Sbjct: 23  TPSPIQEKAIPHVLAGKDV------LGCAQTGTGKTAAFALPIIQNLMRPSDKKHSKRVI 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +++I+ P   LA Q  E  K+Y  +T +   +I G +    + K L+R       I++ T
Sbjct: 77  RSLILTPTRELALQIAENFKEYGSHTPVRCAVIFGGVSAVPQIKELQR----GIDILVAT 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D I   ++ L  V E        R+           ++       +TL+ ++   
Sbjct: 133 PGRLNDLIHQGEISLSHV-EMFVLDEADRMLDMGFIHDVKKIISLLPVKKQTLLFSATMP 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------ 496
            +I  +TEK     P    + P++ I ++IE     + +  K   +   ++ +       
Sbjct: 192 PEIQALTEK-LLHNPAVVEVTPVSSIVDLIEDSLYYVDKENKRALLVHLLKREAITSTLV 250

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +  +   +R          + A IHG  S   ++  +  FK GT ++L AT +   GID
Sbjct: 251 FTRTKHGADRMAKFLTKNRINAAAIHGDKSQGARQKALSQFKAGTVRVLAATDIAARGID 310

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           + + S +I  +  +     +H++ GR GR       I                ++
Sbjct: 311 IEELSCVINFDLPNVPETYVHRI-GRTGRAGLGGRAISFSDIEEKAYVEDIEKLI 364


>gi|226313946|ref|YP_002773842.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226096896|dbj|BAH45338.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 493

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 172/443 (38%), Gaps = 51/443 (11%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                   ++ Q I       PT+ QE AI  I++          I Q   G+GKT   +
Sbjct: 5   FASFGFRPELMQGIQDLYYKEPTQIQEEAIPLIMEGKD------LIGQAQTGTGKTAAFM 58

Query: 312 IAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           + +  A++ G    QA+I+ P   L+ Q  + ++K  ++  + V  + G      +   L
Sbjct: 59  LPILNALDEGKRDIQALILTPTRELSIQIAKEVEKLGKHLNVNVLSLHGGTDIDKQLSKL 118

Query: 369 ERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +        I++GT     D ++     + ++  +++DE  +      L+  ++      
Sbjct: 119 KE----TVQIVVGTPGRVLDHMKRGSLHFGRISTLVLDEADKMMEMGFLEDVEQ------ 168

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            ++  TP  R ++L S    D+ K       ++P    I    +  E IE+   V+++  
Sbjct: 169 -VIVHTPSQRQVLLFSATMPDLVKKLAHRFMKQPPHIKIEGKQKTVERIEQFYYVVNQSD 227

Query: 484 KAYWICPQIEEKKES---NFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSF 537
           K   +   +E+++      F +   R   L         S   ++G +S   +E +M  F
Sbjct: 228 KTDALVDVLEQEQPFLTIVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQF 287

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +    + LIAT +   G+DV   + +I  +  +   + +H++ GR GR  +    I L  
Sbjct: 288 REIRFQFLIATDIAARGLDVEGVTHVINYDLPNDVDSYIHRV-GRTGRAGQKGKAISLIS 346

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL--GIKQSGMPKFLIAQPELHDSL 655
           P             K        A  + +  +EG  L  G +Q           E     
Sbjct: 347 PRQKNLMARFAKATK--------ASIEERILQEGRHLDAGRRQRAE--------EREAHF 390

Query: 656 LEI-ARKDAKHILTQDPDLTSVR 677
           +E+ A++  +    +D + + VR
Sbjct: 391 IELRAQQAKEQQKEKDKEFSPVR 413


>gi|254417807|ref|ZP_05031531.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
 gi|196183984|gb|EDX78960.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
          Length = 510

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 67/339 (19%), Positives = 127/339 (37%), Gaps = 27/339 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  QE AI D++Q          +     G+GKT    + +   +            +
Sbjct: 38  KPTPIQEKAIPDVMQGKD------LLGIAQTGTGKTAAFALPILHRLAENRIAPKPRTTR 91

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++++P   LA Q  +  K Y  +    V +I G +    + +AL++       I++   
Sbjct: 92  VLVLSPTRELATQIGDSFKAYGAHLGFRVAVIFGGVKYGAQERALQQ----GLDILVAAP 147

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D IQ   L L   +        Q L L        ++        + L  ++    
Sbjct: 148 GRLLDHIQQKNLDLSSTEILVLDEADQMLDLGFIKPIRQIVSRIPA-KRQNLFFSATMPT 206

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--- 500
           +I K+      + P+K  + P +   + I +  V + +G+K   +     + + +     
Sbjct: 207 EIGKLAG-ELLKDPVKVQVTPQSTTVQRISQSVVHVEQGRKRALLTEMFSDPEYTRCLVF 265

Query: 501 ---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++  +  E        IHG  S   +E  +D+FK G  ++L+AT +   GIDV
Sbjct: 266 TKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLRVLVATDIAARGIDV 325

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
              S ++     H   A +H++ GR  R     + I   
Sbjct: 326 DGVSHVVNFELPHVPEAYVHRI-GRTARAGADGTAISFV 363


>gi|195385611|ref|XP_002051498.1| vas [Drosophila virilis]
 gi|21361025|gb|AAM49782.1|AF513908_1 DEAD-box RNA helicase [Drosophila virilis]
 gi|194147955|gb|EDW63653.1| vas [Drosophila virilis]
          Length = 625

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 132/365 (36%), Gaps = 43/365 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q+ +I  I +          +     GSGKT   L+ +   +            QA
Sbjct: 234 PTPIQKVSIPVIAEGRD------LMACAQTGSGKTAAFLLPILNNILDESHDLEIGKPQA 287

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI++P   LA Q +   +K++  T + + I+ G     ++ + + +      H++I T  
Sbjct: 288 VIVSPTRELAIQIFNEARKFSYTTYLKISIVYGGTSFKYQNECITK----GCHVLIATPG 343

Query: 385 LFQDSIQY--------YKLILVIVDEQHRFGV---QQRLKLTQKATAPHVLLMTATPIP- 432
              D +            ++L   D     G     +++   Q     H  LM +   P 
Sbjct: 344 RLLDFVDRTFITFDDTRFIVLDEADRMLDMGFSDSMRKIMHHQTMRPEHQTLMFSATFPE 403

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + +    L +     I         ++  +  +N+ ++  + ++ +L EG     +  
Sbjct: 404 EIQRMAGEFLKNYVFVTIGVVGGACSDVQQTVYEVNKFNKRSKLME-ILREGADGTIVFV 462

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +   +   S           IHG      +E  +  FK GT K+LIAT+V
Sbjct: 463 --------ETKRGADFLASFFSETEFPTTSIHGDRLQSQREQALRDFKTGTMKVLIATSV 514

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN-SYTRLS 609
              G+D+ +   +I  +        +H++ GR GR          + P   +  +   + 
Sbjct: 515 ASRGLDIKNVKHVINYDMPTNIDDYVHRI-GRTGRVGNSGRATSFFDPEQDRTLAADLIK 573

Query: 610 VLKNT 614
           +L+ +
Sbjct: 574 ILEGS 578


>gi|327485805|gb|AEA80211.1| Cold-shock DEAD-box protein A [Vibrio cholerae LMA3894-4]
          Length = 644

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 152/398 (38%), Gaps = 29/398 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L           + +   G+GKT    + +   +   +   QA++MA
Sbjct: 28  SPTPIQAAAIPVLLDGRD------ALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN   + V  I G      + +AL+      AHI++GT    +
Sbjct: 82  PTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS----GAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M   P   + ++ ++     +
Sbjct: 138 DLITRDRL---HLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMV 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            +I E+   R P    +   N+    +E+   V+   +K   +   +E ++         
Sbjct: 195 KEIVERFL-RNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V +++ +   
Sbjct: 314 ITHVYNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQ 372

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +   D  +  E  +  + Q        +  E    L+E
Sbjct: 373 LPHRD--KVAESRLTKLGQELAADKEFSSLERFADLVE 408


>gi|45709504|gb|AAH67585.1| Ddx5 protein [Danio rerio]
          Length = 496

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 90/442 (20%), Positives = 168/442 (38%), Gaps = 47/442 (10%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI 261
             + +N+   P+  K+F   +P   R +  E+   + +  +  K       I    E   
Sbjct: 44  RKKHWNLDELPKFEKNFYQENPDVARRSAQEVEHYRRSKEITVKGRDGPKPIVKFHEANF 103

Query: 262 AQKILRNI----PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            + ++  I       PT  Q       L        M+ I Q   GSGKTL  L+     
Sbjct: 104 PKYVMDVITKQNWTDPTPIQAQGWPVAL----SGKDMVGIAQ--TGSGKTLSYLLPAIVH 157

Query: 318 VE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +          G   +++AP   LAQQ  +   +Y + ++I    I G  P+  + + LE
Sbjct: 158 INHQPFLEHGDGPICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLE 217

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKAT 419
           R       I I T     D ++  K        L+L   D     G + +++    Q   
Sbjct: 218 R----GVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 273

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRKPIKTVII--PINRIDEVIE 473
               L+ +AT       L      +  +I     +  A    ++ V +     + D++I 
Sbjct: 274 DRQTLMWSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIR 333

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L+ ++SE +    I  + +       R   +    +      ++ I HG  +  +++ V
Sbjct: 334 LLEEIMSEKENKTIIFVETK-------RRCDDLTRRMRRDGWPAMGI-HGDKNQQERDWV 385

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           ++ FK G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R ++  +  
Sbjct: 386 LNEFKYGKAPILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRI-GRTARSQKTGTAY 444

Query: 594 LLYHPPLSKNSYTRLSVLKNTE 615
             + P   K ++  +SVL+   
Sbjct: 445 TFFTPNNMKQAHDLVSVLREAN 466


>gi|113868675|ref|YP_727164.1| ATP-dependent helicase [Ralstonia eutropha H16]
 gi|113527451|emb|CAJ93796.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Ralstonia eutropha H16]
          Length = 520

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 141/366 (38%), Gaps = 34/366 (9%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
              ++ +I + +      +PT  Q  AI  +L        M+   Q   G+GKT    + 
Sbjct: 42  SFGLDARILRALSEQGYTTPTPIQAQAIPVVL----IGKDMMGAAQ--TGTGKTAGFALP 95

Query: 314 MAAAVEA-----------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           +   +               +A+++ P   LA Q Y+ + +Y ++T +   ++ G +   
Sbjct: 96  IIQRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMN 155

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +  AL R       I++ T     D +Q   + L  V +        R+          
Sbjct: 156 PQTDALRR----GVEILVATPGRLLDHVQQKSVNLSQV-QMLVLDEADRMLDMGFLPDLQ 210

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            ++       +TL+ ++    +I ++        P+   +   N  +E + ++  ++ +G
Sbjct: 211 RIINLLPAHRQTLLFSATFSPEIKRLASSYLKH-PVTIEVARSNSTNENVRQMVYLVEDG 269

Query: 483 KKAYWICPQIEEKKES----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
            K   +   ++++ E           N +    R     E    + A IHG  +  ++  
Sbjct: 270 HKQAAVVHLLKQRAEQGLSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQ 329

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            ++ FK+GT   L+AT V   G+D+ D   ++  +  +     +H++ GR GR       
Sbjct: 330 TLEGFKSGTIDALVATDVAARGLDIPDMPCVVNFDVPYSAEDYVHRI-GRTGRAGASGDA 388

Query: 593 ILLYHP 598
           + +Y P
Sbjct: 389 LSIYVP 394


>gi|290989782|ref|XP_002677516.1| DEAD/DEAH box helicase [Naegleria gruberi]
 gi|284091124|gb|EFC44772.1| DEAD/DEAH box helicase [Naegleria gruberi]
          Length = 535

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 140/372 (37%), Gaps = 40/372 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+ ++  I   ++ K  M+       GSGKT   L+ +  A+   G         
Sbjct: 127 KPTPIQKHSMPAI---VTSKRDMMA--CAQTGSGKTAAFLLPIINALLKSGIHKDKRRFA 181

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +AVI+AP   L QQ Y+  +K+   T +   ++ G     ++ K LER      
Sbjct: 182 PNKGNPKAVILAPTRELCQQIYDECRKFIFQTYLKTVVVYGGASSGYQMKQLER----GV 237

Query: 377 HIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            I++GT     D IQ  KL +  V     DE  R          Q  +      M     
Sbjct: 238 DILVGTPGRMNDFIQREKLDMSGVQYLVLDEADRMLDMGFEP--QIRSIVEGSGMPPKGD 295

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
             TL+ ++    +  K+       +    V I     D + +    V   GK+   +   
Sbjct: 296 RLTLLYSATFPKETQKLALDFLHDELFVQVGIIGGTTDNITQSFYQVDRRGKQDKLVEVL 355

Query: 492 IEEKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            E+K+E          +S  +R   L        ++IHG      +E  +  FK+G   +
Sbjct: 356 TEKKEEREKTLVFVQQKSTCDRIYELLTPLGFKCSVIHGDKDQRSRERSLRQFKDGYTNI 415

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-PLSKN 603
           L+AT V   G+D+   + +I  +      + +H++ GR GR   +      + P    K 
Sbjct: 416 LVATDVAARGLDIEKVAHVINYDLPKEIDSYIHRI-GRTGRVGNLGIATAFFDPSEDGKL 474

Query: 604 SYTRLSVLKNTE 615
               + +LK+  
Sbjct: 475 CRELVKILKDAN 486


>gi|326913476|ref|XP_003203064.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like [Meleagris
           gallopavo]
          Length = 695

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + A G          
Sbjct: 239 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKE 292

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K+   +++   ++ G      + + LER 
Sbjct: 293 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLER- 351

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 352 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 408

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  +D+    
Sbjct: 409 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDK-RSF 466

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 467 LLDLLNATGKDSLTLVFVETKK------GADALEDFLYHEGYACTSIHGDRSQRDREEAL 520

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 521 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 579

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 580 FFNERNINITKDLLDLLVE 598


>gi|321459317|gb|EFX70372.1| hypothetical protein DAPPUDRAFT_328137 [Daphnia pulex]
          Length = 738

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 72/389 (18%), Positives = 138/389 (35%), Gaps = 59/389 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  IL       R   +     GSGKT   L+ +   +             
Sbjct: 243 KPTPVQKYAIPIILA------RRDVMACAQTGSGKTAAFLVPILNQLFERGPVVNQSAGQ 296

Query: 319 ------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                 +    A+++AP   LA Q Y+  KK+   +++   ++ G      + + LER  
Sbjct: 297 RSYGRRKQYPLALVLAPTRELATQIYDEAKKFAYRSRVRPCVVYGGADVRQQMQDLER-- 354

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLMT 427
               H+++ T     D ++  K+ L       +DE  R          ++        M 
Sbjct: 355 --GCHLLVATPGRLVDMLERGKIGLEHCNFLVLDEADRMLDMGFEPQIRRIVEQDT--MP 410

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            T   +TL+ ++    +I  +  +      I   +  +    E I +  V + E  K  +
Sbjct: 411 KTGDRQTLMFSATFPKEIQMLA-RDFLENYIFLAVGRVGSTSENITQKIVWVEEHDKRSF 469

Query: 488 ICPQIEEKKESNFRSVVER------------------FNSLHEHFT---SSIAIIHGRMS 526
           +   +     + F S VE                    ++L E        +  IHG  S
Sbjct: 470 LLDLLNASGLNKFNSQVETESTEHEQLTLVFVETKRGADALEEFLYRDGYPVTSIHGDRS 529

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             ++E  +  F++G   +L+AT V   G+D+     +I  +        +H++ GR GR 
Sbjct: 530 QREREDALKRFRSGKTPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRI-GRTGRM 588

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTE 615
             +      ++          + ++  T+
Sbjct: 589 GNLGVATSFFNEKNRNLIRDLVELIIETK 617


>gi|149183244|ref|ZP_01861688.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
 gi|148849040|gb|EDL63246.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
          Length = 470

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 101/446 (22%), Positives = 170/446 (38%), Gaps = 56/446 (12%)

Query: 269 IPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQA 324
           + F   T  Q  AI   L+          I Q   G+GKT    I M   ++      Q 
Sbjct: 1   MGFEEATPIQAGAIPLALEGKDV------IGQAQTGTGKTTAFGIPMVEKIDVKNPNVQG 54

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+AP   LA Q  E + K  Q+ ++ V  + G      + +A+++      HII+GT  
Sbjct: 55  LIIAPTRELAIQVSEELYKIGQDKRVNVLAVYGGQDIQRQIRAMKK----NPHIIVGTPG 110

Query: 385 LFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PIP- 432
              D I    L L  V        DE    G  + +   L         LL +AT P P 
Sbjct: 111 RMLDHINRRTLKLGNVSTLVLDEADEMLNMGFIEDIESILKNVPDNRQTLLFSATMPGPI 170

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R +    + D +   +  K      I+   +  +  ++     +++  +  +   I  + 
Sbjct: 171 RKIANNFMTDPETVSVKSKEMTVPHIEQYFVKAHEKEKFDVLSRLLDVQSPELAIIFGRT 230

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +       R V E   +L     S+  I HG +S   + +V+  FK G   +L+AT V  
Sbjct: 231 K-------RRVDELARALTLRGYSAEGI-HGDLSQAKRMTVLRQFKEGRIDVLVATDVAA 282

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-------------P 599
            G+D+   + +   +      + +H++ GR GR  +    +    P              
Sbjct: 283 RGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKEGMAMTFVTPREMGYLRIVEKTTK 341

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDL-KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
            S       +  +  E    +A E L +  K  E+   +  GM K L    E HDS+  +
Sbjct: 342 KSMTQMKPPTSNEALEGQQRLAMEKLVETVKSNELQNYR--GMAKEL---LEDHDSVEIV 396

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRIL 684
           A   A  ++T++PD T V+    R L
Sbjct: 397 A--AALRLMTKEPDDTPVQISEERPL 420


>gi|170589285|ref|XP_001899404.1| KIAA0801 protein [Brugia malayi]
 gi|158593617|gb|EDP32212.1| KIAA0801 protein, putative [Brugia malayi]
          Length = 964

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 75/396 (18%), Positives = 149/396 (37%), Gaps = 44/396 (11%)

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI--LRNIPFS-PTKSQESAIKDIL 285
             +     +   + +R +   +        G   + +  L+ + +  PT  Q  AI  I+
Sbjct: 280 KKEVDEYREELDIRVRGKNCPKPIRSWAQCGVEWKILSTLKKLEYKKPTPIQCQAIPAII 339

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
                      I     GSGKTL  L+ M   +          G  AVIM+P   LA Q 
Sbjct: 340 SGRDV------IGIAKTGSGKTLAFLLPMFRHILDQPELEEMDGPIAVIMSPTRELAMQT 393

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
           ++   K+ +   + V  + G +  + +   L+R     A +++ T     D +       
Sbjct: 394 WKEANKFAKQLNVRVACVYGGVGISDQIGDLKR----GAEVVVCTVGRLTDMLAANKGKV 449

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
               ++  +++DE  R           K            P  +T++ ++     +  + 
Sbjct: 450 TNLRRVTYLVLDEADRMFDMGFEPQVMKIVNNIR------PDRQTVLFSATFPRQMEALA 503

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVE 505
            K    KPI+ ++   + + + + +  V+L E +K   +   +    E+     F    E
Sbjct: 504 RKILD-KPIEIMVGGKSVVCDDVNQNVVILEEHQKMLKLLELLGVYWENGNVLVFVDKQE 562

Query: 506 RFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           + + L      S    A +HG +   D++S +  +K G  KLL+AT+V   G+D+    +
Sbjct: 563 KADDLVAQLMRSGYNCAPLHGGIDQFDRDSTILDYKAGKIKLLVATSVAARGLDIKKLIL 622

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ++  +  +     +H++ GR GR            P
Sbjct: 623 VVNYDCPNHYEDYVHRV-GRTGRAGNKGYAYTFILP 657


>gi|62740097|gb|AAH94097.1| Unknown (protein for MGC:115016) [Xenopus laevis]
          Length = 695

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 134/374 (35%), Gaps = 47/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I++      +   +     GSGKT   L+ + + + A G          
Sbjct: 242 PTPVQKHAIPIIIE------KRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLQE 295

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K+   +++   ++ G      + + LER 
Sbjct: 296 NGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLER- 354

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLM 426
                H+++ T     D ++  K+ L       +DE  R          ++        M
Sbjct: 355 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT--M 409

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
               + +T++ ++    +I  +       + I   +  +    E I +  V + E  K  
Sbjct: 410 PPKGVRQTMMFSATFPKEIQILARDFLD-EYIFLAVGRVGSTSENITQKVVWVEEMDKRS 468

Query: 487 WICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           ++   +               +   +       H   +   IHG  S  D+E  +  F++
Sbjct: 469 FLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 528

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++  
Sbjct: 529 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATSFFNEK 587

Query: 600 LSKNSYTRLSVLKN 613
               +   L +L  
Sbjct: 588 NINITKDLLDLLVE 601


>gi|317970363|ref|ZP_07971753.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0205]
          Length = 598

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 75/363 (20%), Positives = 140/363 (38%), Gaps = 35/363 (9%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                   +I + +       P+  Q +AI +++           + Q   G+GKT    
Sbjct: 33  FAAFGFSPEILEALEEIGYSEPSPIQAAAIPELMLGRD------LVGQAQTGTGKTAAFA 86

Query: 312 IAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKA 367
           + M AA++      Q +++ P   LA Q  +  K Y  +   + V  + G      +   
Sbjct: 87  LPMLAALDETQRTPQVLVLTPTRELAIQVADSFKSYATKLPHLRVLPVYGGSDFRDQIHK 146

Query: 368 LERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLT--QK 417
           L+R       +++GT     D ++           L+L   DE  R G    ++    Q 
Sbjct: 147 LKR----GVQVVVGTPGRVMDHMRQGTLDVSGLRSLVLDEADEMLRMGFIDDVEWVLSQL 202

Query: 418 ATAPHVLLMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                V+L +AT     R +    L       I  K +    I+   I +N   ++    
Sbjct: 203 PEKRQVVLFSATMPSEIRRISHQYLNSPAEITIKTKGSDSSRIQQRFITVNGPMKLEALS 262

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +V+ +E K+   I  +         +++        E     +A+++G ++   +E  ++
Sbjct: 263 RVLEAETKEGVIIFART--------KAITVTVAEALEAKGYGVAVLNGDVAQSQRERTIE 314

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             KNGT  +L+AT V   G+DV   S++I  +      A +H++ GR GR     + IL 
Sbjct: 315 RLKNGTVDVLVATDVAARGLDVDRISLVINYDIPFDSEAYVHRI-GRTGRAGRTGNAILF 373

Query: 596 YHP 598
             P
Sbjct: 374 VTP 376


>gi|212275354|ref|NP_001130628.1| hypothetical protein LOC100191727 [Zea mays]
 gi|194689682|gb|ACF78925.1| unknown [Zea mays]
          Length = 614

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 145/379 (38%), Gaps = 53/379 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM----------------- 314
           SPT  Q  A+  +   M+ ++ M        GSGKT    + +                 
Sbjct: 102 SPTPVQRYAMPIV---MAGRDLM---ACAQTGSGKTAAFCLPVVSGLVAPAGGGNGHGPR 155

Query: 315 ----AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                  V A  +A+++AP   LA Q  E  KK++  T + V +  G  P   + + LE+
Sbjct: 156 DRGSFDRVAAKPRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAYGGTPMFSQLRDLEK 215

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLL 425
                  +++ T     D ++  ++ L  +     DE  R          Q      ++ 
Sbjct: 216 ----GVDLLVATPGRLVDLVERSRISLEAIKYLVMDEADRMLNMGFEP--QIRKIVDMMN 269

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M    + +T++ ++    +I ++         I   +  +    ++I++    ++ G+K 
Sbjct: 270 MPKKSVRQTMLFSATFPPEIQRLATDFL-HNYIFVTVGRVGSSTDLIDQKIEFVNGGEKR 328

Query: 486 YWICPQIEEKKESNFRSVV----------ERFNSLHEHFTS---SIAIIHGRMSDIDKES 532
            ++   ++++     ++               +SL     S   S   IHG  +  ++E 
Sbjct: 329 GFLLDILQKQSVGLSKNKQPLTLVFVETKREADSLQYCLQSNGFSATSIHGDRTQQERER 388

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            + SFK+G   +L+AT V   G+DV + + +I  +        +H++ GR GR  +    
Sbjct: 389 ALKSFKSGATPILVATDVASRGLDVPNVAHVINYDLPKSIDDYVHRI-GRTGRAGKAGKA 447

Query: 593 ILLYHPPLSKNSYTRLSVL 611
             L+       +   L ++
Sbjct: 448 TALFTESNHHLAKDLLELM 466


>gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
 gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
 gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
          Length = 533

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 90/437 (20%), Positives = 165/437 (37%), Gaps = 60/437 (13%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           +  + F   T  Q  +I   L           I Q   G+GKT    + +   +    + 
Sbjct: 17  ITELGFEEATPIQSQSIPIALTGKD------MIGQAQTGTGKTAAFGLPLIHKIAKEEER 70

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+IM P   LA Q  E I K ++   I    I G      + +AL+R    +  IIIG
Sbjct: 71  IVALIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQIRALKR----KPQIIIG 126

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I    + L  V        DE    G  + +           +L       +
Sbjct: 127 TPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDI---------QSILKLVPEERQ 177

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++    +I K+  +   ++P    +IP +    +I++  + + E +K   +   ++
Sbjct: 178 TLLFSATMPANIQKLASQFL-KEPEHVSVIPKHVSAPLIDQAYIEVPERQKFEALSRLLD 236

Query: 494 EKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           +  V+      +    S   +HG +S   +++VM  F++G+  +L+A
Sbjct: 237 MESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVA 296

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN---- 603
           T V   G+DV   + ++  +      + +H++ GR GR  +  +      P    +    
Sbjct: 297 TDVAARGLDVSGVTHVVNFDLPQDPESYVHRI-GRTGRAGKEGTAWSFVTPREMDHLYFI 355

Query: 604 --------SYTRLSVLKNTEDGFL--IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
                       L  +    +G    IAE  L+  ++GE+     +      I   E +D
Sbjct: 356 ERVTRHRIPRKPLPTIAEAIEGKQRIIAERVLEIIEQGEL-----TEYKGLAIQLLEQYD 410

Query: 654 SLLEIARKDAKHILTQD 670
           S+  +A   A  ILT D
Sbjct: 411 SVQLLA--AAMKILTGD 425


>gi|332029665|gb|EGI69554.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
          Length = 595

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 70/367 (19%), Positives = 138/367 (37%), Gaps = 41/367 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            PT  Q       L        M+ I     GSGKTL  ++     +        + G  
Sbjct: 151 EPTSIQAQGWPIAL----SGRDMVGI--ASTGSGKTLSYILPAIVHINSQPKLSRKDGPI 204

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +    +  ++ I    + G  P+  + + L     G   I+I T 
Sbjct: 205 ALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARDL----DGGVEIVIATP 260

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       +   +++DE  R          +K      ++    P  +TL+ +
Sbjct: 261 GRLLDFLESGKTNLKRCTYLVLDEADRMLDMGFEPQIRK------IIEQIRPDRQTLMWS 314

Query: 439 SLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    ++  + E          V    +   + I ++I+  +    E K +  +   + E
Sbjct: 315 ATWPKEVKNLAEDFLKDYAQINVGSLQLSANHNILQIIDVCQDYEKENKLSTLLKEIMAE 374

Query: 495 KKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +          R V E    +      ++ I HG  +  +++ V+  F++G   +L+AT
Sbjct: 375 SENKTIVFIETKRRVDEITRKMKRDGWPAVCI-HGDKTQQERDWVLQDFRSGKAPILVAT 433

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV D   +I  +        +H++ GR GR ++  +    + P  +  +   +
Sbjct: 434 DVAARGLDVEDVKFVINFDYPSCSEDYVHRI-GRTGRRQKTGTAYTFFTPNNANKANDLI 492

Query: 609 SVLKNTE 615
            VLK   
Sbjct: 493 QVLKEAN 499


>gi|218659488|ref|ZP_03515418.1| transcription-repair coupling factor [Rhizobium etli IE4771]
          Length = 248

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 125/249 (50%), Gaps = 10/249 (4%)

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
             D+     M R++ GDVG GKT VAL A   A   G Q  I+ P  +LA+QH++   + 
Sbjct: 9   RSDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAIVVPTTLLARQHFKTFSER 68

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQH 404
            +   + ++  +  +         + +A G+  I++GTHAL    I++  L L+++DE+ 
Sbjct: 69  FRGLPVRIQQASRLVGAKELALTKKEVAEGKTDIVVGTHALLGAGIKFANLGLLVIDEEQ 128

Query: 405 RFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
            FGV+ + +L +  +  HVL ++ATPIPRTL L   G  ++S IT  P  R  ++T I P
Sbjct: 129 HFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISP 188

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHG 523
            + +  + E L      G +++++CP++ +          +    L        +A+ HG
Sbjct: 189 FDSL-VIRETLMREHYRGGQSFYVCPRLADLA--------DVHAFLQSDVPELKVAVAHG 239

Query: 524 RMSDIDKES 532
           +M   + E 
Sbjct: 240 QMPAGELED 248


>gi|78486348|ref|YP_392273.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78364634|gb|ABB42599.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
          Length = 574

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 76/350 (21%), Positives = 140/350 (40%), Gaps = 36/350 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  I +  P+  QE AI  +L+          +     G+GKT    + + + ++     
Sbjct: 20  LEEIGYETPSPIQEQAIPVLLKG------GDILGMAQTGTGKTAAFALPILSKIDLKQKD 73

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E  + +++    + V  I G      + +AL+R      H+++
Sbjct: 74  PQVLVLAPTRELAIQVAEAFQTFSRGVKGLHVLPIYGGSEYGTQIRALKR----GVHVVV 129

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D I+   L L  +        DE  R G    +   L        + L +AT 
Sbjct: 130 GTPGRVMDHIKKGTLKLDTLKVMILDEADEMLRMGFIDDVEWILKHTPDTRQIALFSATM 189

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +  T L D     I +K A    I+     ++ + ++    +++ +E      I
Sbjct: 190 PKEVHRIANTYLQDPTEVIIKQKAATASLIEQKYWLVSGLHKLDALTRILEAETFDGIII 249

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + VE    L     ++ A+ +G ++   +E  +D  K G   +LIAT
Sbjct: 250 FVRTKT-------ATVELAEKLEARGYAAAAL-NGDVAQNQRERTVDQLKKGKLDILIAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V+  G+DV   S +I  +  +   + +H++ GR GR     + IL   P
Sbjct: 302 DVVARGLDVERISHVINYDIPYDNESYVHRI-GRTGRAGRSGTAILFVAP 350


>gi|311276168|ref|XP_003135076.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Sus
           scrofa]
          Length = 646

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 145/379 (38%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 187 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 240

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 241 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 299

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 300 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 356

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 357 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 414

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 415 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 468

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 469 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 527

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++   +  +   L +L  
Sbjct: 528 FFNERNANITKDLLDLLVE 546


>gi|311276166|ref|XP_003135075.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Sus
           scrofa]
          Length = 662

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 145/379 (38%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 430

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 431 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++   +  +   L +L  
Sbjct: 544 FFNERNANITKDLLDLLVE 562


>gi|300933595|ref|ZP_07148851.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
          Length = 779

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 141/377 (37%), Gaps = 40/377 (10%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
           + + F  P+  QE  I  +++     N ++ + Q   G+GKT    + + A ++      
Sbjct: 127 KKVGFEAPSPIQEQTIPVLMEG----NDVVGLAQ--TGTGKTAAFALPILARIDPSKRHP 180

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+++AP   LA Q  E  + +  +   I V  I G      +   L R     AHI++G
Sbjct: 181 QALVLAPTRELALQVAESFESFATHLGGIHVLPIYGGQAYGIQLSGLRR----GAHIVVG 236

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D +    L        +L   DE    G Q+ ++   +           TP  +
Sbjct: 237 TPGRVIDHLNKGSLDISELRFMVLDEADEMLNMGFQEDVERILED----------TPEDK 286

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + L S       +   K     P +  +    R  E IE+  + ++   K   +   +E
Sbjct: 287 QVALFSATMPAGIRRLSKQYLNDPQEITVKSTQRTSENIEQDYLFVNHRNKLEALTRILE 346

Query: 494 EKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             +          ++  E           + A I+G ++   +E  +D  K+G   +L+A
Sbjct: 347 VTEFEAMIMFVRTKNETEELAERLRARGFNAAAINGDIAQAQRERTVDQLKDGRLDILVA 406

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV   + +   +  H   + +H++ GR GR       IL   P   +     
Sbjct: 407 TDVAARGLDVDRITHVFNYDIPHDTESYVHRI-GRTGRAGRSGRAILFVTPRERRLLKAI 465

Query: 608 LSVLKNTEDGFLIAEED 624
               K+T +   +   D
Sbjct: 466 ERATKSTLNEIELPSVD 482


>gi|157804046|ref|YP_001492595.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel]
 gi|157785309|gb|ABV73810.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel]
          Length = 410

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 65/342 (19%), Positives = 138/342 (40%), Gaps = 35/342 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQAVIMAPI 330
            PT+ Q+ +I   +           +     GSGKTL  L+ +  + ++    A+I+ P 
Sbjct: 21  EPTEIQKQSIPIAMIG------SDILASSQTGSGKTLAYLLPVIDSFIKNKTTALILVPT 74

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q Y  + K T+  +I   ++ G  P   +   L++       +IIGT     D +
Sbjct: 75  RELATQIYSTLNKVTRYYKINSAVLIGGEPMPKQFMQLKK----NPKVIIGTPGRIIDHL 130

Query: 391 QYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               L        +L  +D     G++++L+   K               + L+ ++   
Sbjct: 131 NRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEK---------RQFLMFSATMP 181

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----E 497
             I  +++K     P++  +   N+    I++  + +++ +K   +  Q++ ++      
Sbjct: 182 KHIITLSQKYLN-NPVRITVGANNKAAAEIKQESIHIADKEKFSELTKQLDNREGSVIIF 240

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              R   ++  ++ ++       IHG +S   +E V+ SF+    ++++AT V   G+D+
Sbjct: 241 VKTRRSADQLANMLKYENHKAEAIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDI 300

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
                +I  +        LH++ GR GR       +    P 
Sbjct: 301 PHTQHVINYDLPMCPEDYLHRI-GRTGRAGATGHALSFISPE 341


>gi|91206541|sp|Q7SBC6|DBP2_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-2
          Length = 562

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 140/371 (37%), Gaps = 42/371 (11%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------ 320
           +  P +PT  Q       L           +   + GSGKTL   +     + A      
Sbjct: 150 QGFP-APTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAP 202

Query: 321 --GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G   +I+AP   LA Q  + I K+ ++++I    + G +P+  + + L R       +
Sbjct: 203 GDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDLSR----GVEV 258

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTA 428
            I T     D ++  K        L+L   D     G   Q R  + Q       L+ +A
Sbjct: 259 CIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSA 318

Query: 429 TPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEG 482
           T     R L    L D     I           T I+ +     + D +I+ L+ ++   
Sbjct: 319 TWPKEVRNLAADFLTDFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIKHLEKIMEGR 378

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +    I      K     R   +    L +    +++I HG     +++ V+D FK G  
Sbjct: 379 ENQNKILIFTGTK-----RVADDITRFLRQDGWPALSI-HGDKQQNERDWVLDQFKTGKS 432

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +++AT V   GIDV + + ++  +  +     +H++ GR GR     + I  +    SK
Sbjct: 433 PIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRI-GRTGRAGAKGTAITFFTTDNSK 491

Query: 603 NSYTRLSVLKN 613
            +   + VL+ 
Sbjct: 492 QARELVGVLQE 502


>gi|303315651|ref|XP_003067830.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240107506|gb|EER25685.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320034056|gb|EFW16002.1| ATP-dependent RNA helicase DBP2 [Coccidioides posadasii str.
           Silveira]
          Length = 545

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 137/368 (37%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           +   + GSGKTL   +     + A        G  
Sbjct: 150 KPTPIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLGPGDGPI 203

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T 
Sbjct: 204 VLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLSR----GVEVCIATP 259

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G   Q R  + Q        + +AT    
Sbjct: 260 GRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMWSATWPKE 319

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIP----INRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I  +        T I+       + D +I  L+ ++ + K    
Sbjct: 320 VRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMINHLERIMDDKKSKIL 379

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            R   +    L +    +++I HG     +++ V++ FK G   +++A
Sbjct: 380 IFT-------GTKRVADDITRFLRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVA 431

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV D + ++  +  +     +H++ GR GR     + I L+    +K +   
Sbjct: 432 TDVASRGIDVRDITHVLNYDYPNNSEDYVHRI-GRTGRAGAKGTAITLFTTDNAKQARDL 490

Query: 608 LSVLKNTE 615
           +++L  ++
Sbjct: 491 VNILTESK 498


>gi|224068070|ref|XP_002188600.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Taeniopygia
           guttata]
          Length = 1031

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 147/379 (38%), Gaps = 44/379 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  AI  I+           I     GSGKT+  L+ M   +          G  
Sbjct: 394 KPTPIQTQAIPAIMNGRD------LIGIAKTGSGKTIAFLLPMFRHIMDQRALEEGEGPI 447

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AVIM P   LA Q  +  KK+++   + V  + G    + +   L+R     A II+ T 
Sbjct: 448 AVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR----GAEIIVCTP 503

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +           ++  V++DE  R                  ++    P  +T+
Sbjct: 504 GRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVM------RIVDNVRPDRQTV 557

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     +  +  +    KPI+  +   + +   +E+  +V+ E  K   +   +   
Sbjct: 558 MFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHY 616

Query: 496 KE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +E      F    E  + L +    +      +HG +   D++S+++ FKNGTCKLL+AT
Sbjct: 617 QEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVAT 676

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           +V   G+DV    +++  +  +     +H+  GR GR               ++ +   +
Sbjct: 677 SVAARGLDVKQLMLVVNYSCPNHYEDYVHR-AGRTGRAGNKGYAYTFITEDQARYAGDII 735

Query: 609 SVLKNTEDGFLIAEEDLKQ 627
             L+    G  I   DL++
Sbjct: 736 KALE--LSGNPIPP-DLEK 751


>gi|332113313|gb|AEE02033.1| X-linked DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Sus scrofa]
          Length = 661

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 145/379 (38%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 430

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 431 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++   +  +   L +L  
Sbjct: 544 FFNERNANITKDLLDLLVE 562


>gi|45361237|ref|NP_989196.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Xenopus
           (Silurana) tropicalis]
 gi|38649000|gb|AAH63374.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Xenopus
           (Silurana) tropicalis]
          Length = 699

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 134/374 (35%), Gaps = 47/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I++      +   +     GSGKT   L+ + + + A G          
Sbjct: 245 PTPVQKHAIPIIIE------KRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLKE 298

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K+   +++   ++ G      + + LER 
Sbjct: 299 NGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLER- 357

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLM 426
                H+++ T     D ++  K+ L       +DE  R          ++        M
Sbjct: 358 ---GCHLLVATPGRLVDMMERGKIGLDFCNYLVLDEADRMLDMGFEPQIRRIVEQDT--M 412

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
               + +T++ ++    +I  +       + I   +  +    E I +  V + E  K  
Sbjct: 413 PPKGVRQTMMFSATFPKEIQILARDFLD-EYIFLAVGRVGSTSENITQKVVWVEEMDKRS 471

Query: 487 WICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           ++   +               +   +       H   +   IHG  S  D+E  +  F++
Sbjct: 472 FLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 531

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++  
Sbjct: 532 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATSFFNEK 590

Query: 600 LSKNSYTRLSVLKN 613
               +   L +L  
Sbjct: 591 NINITKDLLDLLVE 604


>gi|260796379|ref|XP_002593182.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae]
 gi|229278406|gb|EEN49193.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae]
          Length = 614

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 88/484 (18%), Positives = 169/484 (34%), Gaps = 75/484 (15%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-- 269
           P +  D+    P  ER+  +        +      F K   IP+   G+   + +     
Sbjct: 88  PPEDADWSKPLPRNERMERELFGKSNTGI-----NFDKYEDIPVEATGESCPQHISEFTD 142

Query: 270 ---------------PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
                             PT  Q+ AI     +         +     GSGKT   LI +
Sbjct: 143 LDLGEIISNNIKLSNYMKPTPVQKYAIPIARANRD------LMACAQTGSGKTAAFLIPI 196

Query: 315 AAAV-EAGGQ--------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            + + E G Q                    A+++AP   LA Q Y+  KK+   + +   
Sbjct: 197 LSLIYENGPQGLPQHGRQYGGSGSRKRYPLALVLAPTRELASQIYDESKKFAYRSHVRPC 256

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV-----IVDEQHRFGV 408
           ++ G      + + LER      H+++GT     D ++  ++ L      I+DE  R   
Sbjct: 257 VVYGGADIGGQMRDLER----GCHLLVGTPGRLVDMMERGRIGLDYIKYLILDEADRMLD 312

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
                  ++        M  T   RT++ ++    +I  +         I   +  +   
Sbjct: 313 MGFEPQIRRIVEQDT--MPGTGKRRTMMFSATFPKEIQMLARDFLD-NYIFLAVGRVGST 369

Query: 469 DEVIERLKVVLSEGKKAYWICPQI-----EEKKESNFRSVVERFNSLHEHFTS---SIAI 520
            + I +  V + E  K  ++   +     E+     F    +  +SL     S    ++ 
Sbjct: 370 SDNITQKVVWVDEQDKRSFLLDLLNATGKEDSLTLTFVETKKGADSLEAFLYSEGYPVSS 429

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           IHG  S  ++E  + +F+ G   +L+AT V   G+D+ +   +I  +        +H++ 
Sbjct: 430 IHGDRSQREREDALMTFRTGVTPILVATAVAARGLDIPNVKHVINFDLPSDIDEYVHRI- 488

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI-----AEEDLKQRKEGEILG 635
           GR GR   +      ++          + +L  ++          A E+ +Q+  G   G
Sbjct: 489 GRTGRVGNLGLATSFFNDKNRNVVRDLVDILIESKQELPPWLESMAYEERRQQSSGRNRG 548

Query: 636 IKQS 639
             +S
Sbjct: 549 RNRS 552


>gi|119178046|ref|XP_001240731.1| conserved hypothetical protein [Coccidioides immitis RS]
 gi|118575172|sp|Q1DP69|DBP2_COCIM RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 542

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 137/368 (37%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           +   + GSGKTL   +     + A        G  
Sbjct: 147 KPTPIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLGPGDGPI 200

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T 
Sbjct: 201 VLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLSR----GVEVCIATP 256

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G   Q R  + Q        + +AT    
Sbjct: 257 GRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMWSATWPKE 316

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIP----INRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I  +        T I+       + D +I  L+ ++ + K    
Sbjct: 317 VRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMINHLERIMDDKKSKIL 376

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            R   +    L +    +++I HG     +++ V++ FK G   +++A
Sbjct: 377 IFT-------GTKRVADDITRFLRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVA 428

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV D + ++  +  +     +H++ GR GR     + I L+    +K +   
Sbjct: 429 TDVASRGIDVRDITHVLNYDYPNNSEDYVHRI-GRTGRAGAKGTAITLFTTDNAKQARDL 487

Query: 608 LSVLKNTE 615
           +++L  ++
Sbjct: 488 VNILTESK 495


>gi|4409804|gb|AAD20136.1| autoaggregation-mediating protein [Lactobacillus reuteri ATCC
           53608]
          Length = 497

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 130/344 (37%), Gaps = 40/344 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  QE  I  +L+          I Q   G+GKT    + +   V+      QA+I++P 
Sbjct: 25  TPIQEQTIPMVLEGKDV------IGQAQTGTGKTAAFGLPIIENVDTENPNIQAIIISPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + +  ++  + V+++ G      + K+L++       I++GT    +D I
Sbjct: 79  RELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQ----HPQILVGTPGRLRDHI 134

Query: 391 QYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--LVLT 438
             +         L+L   DE    G  + +   + +       LL +AT  P    + + 
Sbjct: 135 NRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLFSATMPPEIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  +I  K      +    +     ++     +++  +      +  + +     
Sbjct: 195 FMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGRTKR---- 250

Query: 499 NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                  R + L +   +     A IHG ++   +  +M  FKN    +L+AT V   G+
Sbjct: 251 -------RVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGL 303

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           D+   + +   +      + +H++ GR GR       +    P 
Sbjct: 304 DISGVTHVYNYDIPSDPDSYVHRI-GRTGRAGHHGVSLTFVTPN 346


>gi|323138624|ref|ZP_08073691.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
 gi|322396112|gb|EFX98646.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
          Length = 496

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 125/354 (35%), Gaps = 27/354 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   LQ          +     G+GKT    + M + +E G       + +
Sbjct: 23  TPTPIQAQAIPPALQGRD------ILGIAQTGTGKTAAFTLPMLSRLEQGRARARVPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    +   + R     A ++I T   
Sbjct: 77  ILEPTRELAAQVEESFAKYGANHKLNVALLIGGVSFGDQEAKIMR----GADVLIATPGR 132

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D     KL+L  + E        R+           +        +TL  ++    +I
Sbjct: 133 LLDFFDRGKLLLTGI-EILVIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFSATMPPEI 191

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-------- 497
           +++TE      PI+  +   +     I +  V              +    E        
Sbjct: 192 TRLTEAFL-HNPIRIEVARASTTASTIRQALVASRGHADKRETLRNLIRGAENLKNAIVF 250

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N +  V   +            +HG M  + + + +D+FKNG   +L+ + V   G+D+
Sbjct: 251 CNRKRDVAILHRSLVKHGFPAGALHGDMDQLARMASLDAFKNGDVAILVCSDVAARGLDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            D S +   +        +H++ GR GR       + +     +K      S++
Sbjct: 311 PDVSHVFNFDVPTHSEDYVHRI-GRTGRAGRSGVAMTIVTEDDTKYIDQIQSLI 363


>gi|309358205|emb|CAP34588.2| hypothetical protein CBG_16678 [Caenorhabditis briggsae AF16]
          Length = 1000

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 76/409 (18%), Positives = 152/409 (37%), Gaps = 45/409 (11%)

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI--LRNIPFS-PT 274
            E     +   A  +    ++  + ++     +        G   + +  L+ + +S PT
Sbjct: 300 IETAEIQKMTKAEVKAYREELDSITVKGIDCPKPIKTFAQCGLNLKMMNVLKKLDYSKPT 359

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVI 326
             Q  AI  I+           I     GSGKTL  L+ M   +          G  AVI
Sbjct: 360 SIQAQAIPAIMSGRDV------IGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVI 413

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +AP   LA Q Y+   K+ +   + V    G +  + +   L+R     A I++ T    
Sbjct: 414 LAPTRELAMQTYKEANKFAKVLGLRVACTYGGVGISEQIADLKR----GAEIVVCTPGRM 469

Query: 387 QDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            D +           ++  +++DE  R   +       K            P  +T++ +
Sbjct: 470 IDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIR------PDKQTVLFS 523

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     +  +  K    KP++ ++   + +   + +  V+  E +K   +   +    E 
Sbjct: 524 ATFPRHMEALARKVLD-KPVEILVGGKSVVCSDVTQNAVICEEHQKLLKLLELLGMYYEQ 582

Query: 499 NF--------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                         +  + L +   +S+A +HG +   D++S +  FK G  K+L+AT+V
Sbjct: 583 GCSIVFVDKQEKADDIVDQLMKTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSV 642

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              G+DV +  +++  +  +     +H++ GR GR            P 
Sbjct: 643 AARGLDVKNLILVVNYDCPNHYEDYVHRV-GRTGRAGRKGYAYTFVLPE 690


>gi|310756762|gb|ADP20522.1| ATP-dependent RNA helicase DDX3X [Heterocephalus glaber]
          Length = 662

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 145/379 (38%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  ID+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDIDK-RSF 430

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +           +   IHG  S  D+E  +
Sbjct: 431 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYREGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++   +  +   L +L  
Sbjct: 544 FFNDRNANITKDLLDLLVE 562


>gi|302318882|ref|NP_001032894.2| ATP-dependent RNA helicase DDX42 [Danio rerio]
          Length = 908

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 137/400 (34%), Gaps = 45/400 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              + ++  +I ++    PT  Q   +   L           I     GSGKT   +  +
Sbjct: 260 FGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRD------AIGIAKTGSGKTAAFIWPI 313

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G  AVI+ P   L QQ +   K++ +   +    + G      + K
Sbjct: 314 LVHIMDQKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAK 373

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKA 418
           AL+      A I++ T     D ++           L+    D     G + +++     
Sbjct: 374 ALQE----GAEIVVCTPGRLIDHVKKKATSLQRVTFLVFDEADRMFDMGFEYQVRSIASH 429

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                      P  +TL+ ++     I K+  +     PI+ V   I   +E I ++  V
Sbjct: 430 VR---------PDRQTLLFSATFRKKIEKLA-RDILVDPIRVVQGDIGEANEDITQIVEV 479

Query: 479 LSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           L  G+ K  W+  ++ E             ++  E   +       S+ ++HG M   ++
Sbjct: 480 LQSGQDKWGWLTRRLVEFTSAGSVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSER 539

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             V+  FK     +L+AT V   G+D+     ++  +         H++ GR GR  E  
Sbjct: 540 NKVIADFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRI-GRTGRAGEKG 598

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
               L     +  +   +  L+           DL  +  
Sbjct: 599 VAYTLLTTKDTSFAGDLVRNLEGANQSVSKDLLDLAMQNP 638


>gi|327275873|ref|XP_003222696.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Anolis
           carolinensis]
          Length = 924

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 85/462 (18%), Positives = 156/462 (33%), Gaps = 55/462 (11%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F              L   Q+  L  +   +     P    
Sbjct: 200 LPPIDHS--EIEYPPFEKNFHEEHE-----EITSLTPQQVVELRHKLNLRVSGAAPPRPG 252

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   I   +        M+ I     GSGKT  
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGIPVAM----SGRDMIGI--AKTGSGKTAA 306

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFGVQQRLKLTQ 416
             + KAL+      A I++ T     D ++       ++  ++ DE  R          +
Sbjct: 367 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVR 422

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
              +         P  +TL+ ++     I K+  +     PI+ V   I   +E I ++ 
Sbjct: 423 SVASHVR------PERQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDITQIV 475

Query: 477 VVLSEG-KKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
            + + G  K  W+  ++ E             ++  E   +  +    S+ ++HG M   
Sbjct: 476 EIFASGPNKWNWLTSRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHSLGLLHGDMDQS 535

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           ++  V+  FK G   +L+AT V   G+D+     +I  +         H++ GR GR  E
Sbjct: 536 ERNKVISDFKKGAFPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGRAGE 594

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
                 L     S  +   +  L+           DL  +  
Sbjct: 595 KGVAYTLLTHKDSNFAGDLVRNLEGANQNVSKELLDLAMQNA 636


>gi|297817166|ref|XP_002876466.1| hypothetical protein ARALYDRAFT_486301 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322304|gb|EFH52725.1| hypothetical protein ARALYDRAFT_486301 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 61/375 (16%), Positives = 134/375 (35%), Gaps = 49/375 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----------- 321
           PT  Q  AI  +L       +   +     GSGKT      + + +              
Sbjct: 172 PTPVQRHAIPILL------GQRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRT 225

Query: 322 --GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               AVI++P   LA Q ++  KK++  T + V +  G  P   + + LER       I+
Sbjct: 226 VYPLAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELER----GVDIL 281

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           + T     D ++  +        L L   D     G + ++           + M     
Sbjct: 282 VATPGRLNDLLERARVSMQRIKFLALDEADRMLDMGFEPQI-----RKIVEQMDMPPRGE 336

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            +T++ ++    +I ++         I   +  +    ++I +    + E  K   +   
Sbjct: 337 RQTMLFSATFPREIQRLAADFM-SNYIFLAVGRVGSSTDLITQRIEFVQESDKRSHLMDL 395

Query: 492 IEEKKESNFRSV-----------VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +  ++E+  +              +   +           IHG  +  ++E  + SFK+G
Sbjct: 396 LHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKSG 455

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+D+   + ++  +  +     +H++ GR GR  +       ++   
Sbjct: 456 RTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI-GRTGRAGKSGIATAFFNENN 514

Query: 601 SKNSYTRLSVLKNTE 615
           ++ +     +++   
Sbjct: 515 AQMARLLAELMQEAN 529


>gi|227358108|ref|ZP_03842449.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|227161444|gb|EEI46481.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 457

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 90/464 (19%), Positives = 179/464 (38%), Gaps = 68/464 (14%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + + + T  QE+++  IL     +       Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQEASLPAILAGKDVR------AQAKTGSGKTAAFGLGLLQRIDAKQFN 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +    I +  + G +P + +R +L       AHII+
Sbjct: 72  TQSLVLCPTRELADQVANELRRLARFLPNIKILTLCGGVPFSIQRDSLIHA----AHIIV 127

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            T     D +            L+L   D     G    +          +  M+A    
Sbjct: 128 ATPGRLLDHLNKQTVTLADVKTLVLDEADRMLDMGFFDDISDI-------ISQMSAQ--R 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++    +I+KI+ K   + P+   I   + +   +E+    +S   K   +   +
Sbjct: 179 QTLLFSATWPDEIAKISRK-IQQDPVTIEINSPDELP-AVEQQFYEISRYGKLGLLQKLL 236

Query: 493 EEKKESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              + ++        R   + + +L E    S+  +HG M   +++  +  F NG+C++L
Sbjct: 237 SHHQPNSCVVFCNTKRDCQDVYEALTES-NQSVLALHGDMEQKERDQTLIRFANGSCRVL 295

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+D+    ++I     H     +H++ GR  R  E    I    P     + 
Sbjct: 296 VATDVAARGLDIKALEMVINYELSHDPEVHIHRI-GRTARAGESGLAISFCAPEEIPRAN 354

Query: 606 TRLSVL------KNTEDGFLI-----AEEDL--------KQRKEGEILGIKQS--GMPKF 644
               +L      ++   G  I         L        K R  G+ILG      G    
Sbjct: 355 ALEEMLNIKLDWQSAPSGLSITPLVATMATLCIDGGKKAKMR-PGDILGALTGDLGFSGE 413

Query: 645 LIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
            I +  +H   + + + +  AK +         ++G+S+++ L+
Sbjct: 414 DIGKINIHPTHAYVAVKQSIAKQVWKSL-QQGKIKGKSVKVRLF 456


>gi|42518357|ref|NP_964287.1| RNA helicase [Lactobacillus johnsonii NCC 533]
 gi|41582642|gb|AAS08253.1| probable RNA helicase [Lactobacillus johnsonii NCC 533]
          Length = 484

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 74/348 (21%), Positives = 134/348 (38%), Gaps = 39/348 (11%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE  I  +L+          I Q   G+GKT    + +   ++      QA+
Sbjct: 20  GFEEATPIQEKTIPLVLEGKDV------IGQAQTGTGKTAAFGLPILQNLDKQHDSIQAI 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E + +  ++ +  V+++ G      + +AL++       I++GT   
Sbjct: 74  IIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQ----TPAILVGTPGR 129

Query: 386 FQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D ++           ++L   DE    G  Q +           +L  A+   +TL+ 
Sbjct: 130 LLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDI---------ESILKYASSKHQTLLF 180

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I +I EK     P    I        +I++  V   E +K   +C  I+ +  
Sbjct: 181 SATMPKPILRIGEKFMN-DPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLIDVQNP 239

Query: 497 --ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L     +     A IHG +S   + SV+  F+ G   +L+AT V 
Sbjct: 240 DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVA 299

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+   S +   +      + +H++ GR GR  +    +    P 
Sbjct: 300 ARGLDISGVSHVYNYDIPQDPNSYVHRI-GRTGRAGQNGMSVTFVTPN 346


>gi|255533359|ref|YP_003093731.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255346343|gb|ACU05669.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 437

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 132/360 (36%), Gaps = 38/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  QE AI  ILQ+         +     G+GKT    I M   +             
Sbjct: 23  QPTPIQEQAIPSILQNRD------LLGCAQTGTGKTAAFAIPMLQLLSKPHTNTKIHKVI 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LA Q  E  K Y +N  I   +I G + Q  +  AL R       I++ T
Sbjct: 77  KALVLTPTRELAIQIEESFKAYGKNLPIRHLVIFGGVGQKAQTDALHR----GVDILVAT 132

Query: 383 HALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      I    + + ++DE  R      +   +K      ++       +TL  
Sbjct: 133 PGRLLDLMNQGFINLRDIEIFVLDEADRMLDMGFIHDVKK------VIAKLPAKRQTLFF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I  + +      P+K  + P++   E I +    + +G K   +   +++K  
Sbjct: 187 SATMPKEIQGLADT-ILTNPVKVEVTPVSSTAEKIRQEIFYVEKGDKKGLLMHILQDKTI 245

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   +R              IHG  S   ++  + +FK  T ++L+AT + 
Sbjct: 246 ETALVFARTKHGADRIVKDLIKVGVKAEAIHGNKSQNARQRALTNFKAKTTRILVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV + S +I     +     +H++ GR GR     + +        +       ++
Sbjct: 306 ARGIDVDELSHVINYELPNIPETYVHRI-GRTGRAGLSGTALSFCDAEEKEFLDDIEKLI 364


>gi|317127874|ref|YP_004094156.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315472822|gb|ADU29425.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 481

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 80/364 (21%), Positives = 132/364 (36%), Gaps = 39/364 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT+ Q   I   +      N+   +++   GSGKT    I +   +   E   QA+I+ 
Sbjct: 26  KPTEVQREVIPLAM------NKEDLVVKSQTGSGKTAAFGIPICEMMNWEERKPQALILT 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I    +   I    + G  P A +++ L++      H+++GT     D
Sbjct: 80  PTRELAVQVREDIANIGRFKLIKALAVYGKEPFAKQKEELKQRN----HVVVGTPGRMLD 135

Query: 389 SIQY--------YKLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLV 436
            I+           LIL   DE    G        +         ++ +AT       L 
Sbjct: 136 HIERETLALDEIKYLILDEADEMLNMGFINDVEEIMKALPADRVTMVFSATLPKDVEDLC 195

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              + +    +I         I+  ++ +N   ++     + + E   +  I        
Sbjct: 196 HKYMENPQHIEIASSGITTASIEHHLMEVNPKGKLALLKDITVVENPDSCIIF------- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+   S  E    S   +HG +   D+ SVMD FK G  + L+AT V   GID
Sbjct: 249 -CNTKEHVDTVFSELERANYSCEKLHGGLEQEDRFSVMDGFKRGNFRYLVATDVAARGID 307

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V + +++I  +        +H+  GR GR       I    P   K        +     
Sbjct: 308 VDNVTLVINYDVPMEKEGYVHR-TGRTGRSGNKGRAITFVTPNDGKYLKAIEKYI----- 361

Query: 617 GFLI 620
           GF I
Sbjct: 362 GFSI 365


>gi|323493912|ref|ZP_08099029.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311853|gb|EGA65000.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 419

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 139/368 (37%), Gaps = 34/368 (9%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------ 318
           L ++ F  PT+ Q  AI  +L+          +     G+GKT    + +   +      
Sbjct: 18  LESLGFKQPTEVQTQAIPHVLEGKDV------LAGAQTGTGKTAAFGLPILQKLIDSDTK 71

Query: 319 ----EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                   +A+++ P   LAQQ ++ + +Y   T+I V  + G      + + L++    
Sbjct: 72  RDIQSNDVRALVLVPTRELAQQVFDNLTQYAAQTKIKVVAVYGGTSMNVQTRNLDQ---- 127

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I+I T     D +    + L    E        R+           +L       +T
Sbjct: 128 GCDILIATPGRLIDHMYCKNINL-HKTEYLVLDEADRMLDMGFMPDIKRILQRCNDDRQT 186

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L  ++  D  I  I  +    +P++  + P N   E ++++   + + +KA  +   I  
Sbjct: 187 LFFSATFDKRIKTIAYR-MLEEPVEVQVSPSNSTAETVKQMVYPVDKKRKAELLAYLIGS 245

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +           +   +      +      A I+G  S   ++  +D FK+G  + LIAT
Sbjct: 246 RNWQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGQVRALIAT 305

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+     ++  +  +     +H++ GR GR  +    + L    +S++    L
Sbjct: 306 DVAARGLDIQQLEQVVNFDMPYKAEDYVHRI-GRTGRAGKEGFAVSL----MSRDEEYLL 360

Query: 609 SVLKNTED 616
             ++   D
Sbjct: 361 HAIERLLD 368


>gi|302774092|ref|XP_002970463.1| hypothetical protein SELMODRAFT_441099 [Selaginella moellendorffii]
 gi|300161979|gb|EFJ28593.1| hypothetical protein SELMODRAFT_441099 [Selaginella moellendorffii]
          Length = 1198

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 71/354 (20%), Positives = 133/354 (37%), Gaps = 38/354 (10%)

Query: 300 GDVGSGKTLVALIAMAAAVE-------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352
           G+ GSGKTL  L+     +E       +G   +++AP   LA Q +E   K+ ++++I  
Sbjct: 224 GNTGSGKTLGYLLPAFMHLERRRNNPRSGPTVLVLAPTRELATQIHEEAVKFGRSSRITS 283

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQH 404
             + G   +  + + +ER       I+I T     D ++  +        L+L   D   
Sbjct: 284 TCVYGGASKGPQLRDIER----GCDIVIATPGRLNDFLEMRRISLRQVSYLVLDEADRML 339

Query: 405 RFGVQQRLKLT--QKATAPHVLLMTATPIPRTL-----VLTSLGDIDISKITEKPAGRKP 457
             G + +++    +       L+ TAT           +L +   ++I    +  A +  
Sbjct: 340 DMGFEPQIRKIVNEVPVQRQTLMYTATWPKEVRKIAGDLLMNPIQVNIGNTDDLAANKAI 399

Query: 458 IKTV-IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            + V ++        +E +      G K    C        S  R   +   SL   F +
Sbjct: 400 TQCVEVVSPQDKARKLELILRTQEPGSKIIIFC--------STKRMCDQLARSLRRDFGA 451

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG  S  +++ V+  FK G   +L+AT V   G+D+ D  ++I  +        +
Sbjct: 452 --VAIHGDKSQGERDWVLSQFKAGKSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYV 509

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           H++ GR GR          +     K +   + VL+           ++  R  
Sbjct: 510 HRI-GRTGRAGATGLAHTFFAEQDGKYARDLIKVLEGANQKVPPELREMALRGG 562


>gi|169628494|ref|YP_001702143.1| cold-shock DEAD box protein A homolog (ATP-dependent RNA helicase
           DEAD homolog) [Mycobacterium abscessus ATCC 19977]
 gi|169240461|emb|CAM61489.1| Probable cold-shock DEAD box protein A homolog (ATP-dependent RNA
           helicase DEAD homolog) [Mycobacterium abscessus]
          Length = 598

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 80/368 (21%), Positives = 145/368 (39%), Gaps = 40/368 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q + I  +L           +     G+GKT    I + + ++      QA+++A
Sbjct: 45  TPSAIQAATIPPLLAG------SDVVGLAQTGTGKTAAFAIPILSKIDLTSKDTQALVLA 98

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y  +   + V  I G      +   L+R     A +++GT     
Sbjct: 99  PTRELALQVAEAFGRYGAHMPKLNVLPIYGGQSYVVQLAGLKR----GAQVVVGTPGRVI 154

Query: 388 DSIQYYKLILVIVD--------EQHRFGVQQRL--KLTQKATAPHVLLMTAT--PIPRTL 435
           D ++   L L  +D        E    G  + +   L        V L +AT     R L
Sbjct: 155 DHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILADTPEYKQVALFSATMPTTIRRL 214

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D    KI  K +  + I    I +    ++    +++  E  +A  +  + ++ 
Sbjct: 215 TKKYLHDPVEIKIDAKTSTAENITQRFIQVAGPRKMDALTRILEVETFEAMIVFVRTKQA 274

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E       E  + L     ++ AI +G ++   +E  +++ K GT  +L+AT V   G+
Sbjct: 275 TE-------EVADKLKARGFAAAAI-NGDINQSQRERTINALKAGTIDILVATDVAARGL 326

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  H   + +H++ GR GR     + +L   P         L  ++ T 
Sbjct: 327 DVERISHVLNYDIPHDTESYVHRI-GRTGRAGRSGTAVLFVSPRE----RHLLKAIEKTT 381

Query: 616 DGFLIAEE 623
            G  +AEE
Sbjct: 382 -GAKLAEE 388


>gi|147904603|ref|NP_001080569.1| ATP-dependent RNA helicase DDX42 [Xenopus laevis]
 gi|82209788|sp|Q7ZY47|DDX42_XENLA RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|27696431|gb|AAH43977.1| Ddx42-prov protein [Xenopus laevis]
          Length = 947

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 84/462 (18%), Positives = 152/462 (32%), Gaps = 61/462 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I      I  P   K+F          A       QI  L  +   +     P    
Sbjct: 197 LPPIDH--TEIEYPPFEKNFYEEHE-----AITSQTPQQITELRHKLNLRVSGAAPPRLC 249

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   I   L        M+ I     GSGKT  
Sbjct: 250 SSFAHFGFDEQLLHQIRKSEYTQPTPIQCQGIPVAL----SGRDMIGI--AKTGSGKTAA 303

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  +   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 304 FIWPILVHIMDQKELQPADGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSM 363

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 364 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVR 419

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E I 
Sbjct: 420 SIANHVR---------PDRQTLLFSATFRKKIEKLA-RDILVDPIRVVQGDIGEANEDIT 469

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E   +         ++  E   +        + ++HG M
Sbjct: 470 QVVEILPSGPEKWTWLTRRLVEFTSTGSVLVFVTKKANAEELAANLRQDDHPLGLLHGDM 529

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK  +  +L+AT V   G+D+     ++  +         H++ GR GR
Sbjct: 530 DQSERNKVISDFKKKSIPVLVATDVAARGLDIPSIKTVVNYDVARDIDTHTHRI-GRTGR 588

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
             E      L     S  +   +  L+           DL  
Sbjct: 589 AGEKGVAYTLLTSKESNFAGDLVRNLEGANQYVSKELLDLAM 630


>gi|145222813|ref|YP_001133491.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145215299|gb|ABP44703.1| ATP-dependent RNA helicase CsdA [Mycobacterium gilvum PYR-GCK]
          Length = 559

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 69/336 (20%), Positives = 132/336 (39%), Gaps = 22/336 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q + I  IL+          +     G+GKT    I + + ++      QA+++A
Sbjct: 35  SPSPIQAATIPAILEG------SDVVGLAQTGTGKTAAFAIPILSKIDTDSRNTQALVLA 88

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   +Y    ++ V  I G      +   L+R     A +++GT     D
Sbjct: 89  PTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLAGLKR----GAQVVVGTPGRVID 144

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++   L L  +D        + L++        +L  T     +  + ++     I KI
Sbjct: 145 HLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADT-PEYKQVALFSATMPPAIKKI 203

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------RS 502
           T K     P++  +    +  E I +   ++S  +K   +   +E ++          + 
Sbjct: 204 TAKYL-HDPVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLETEQGDAMIVFVRTKQ 262

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             E           + + I+G +    +E  +   K+GT  +L+AT V   G+DV   S 
Sbjct: 263 ATEEVAEKLRARGFAASAINGDIPQAVRERTIAQLKDGTIDILVATDVAARGLDVERISH 322

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ++  +  H   + +H++ GR GR     + +L   P
Sbjct: 323 VVNFDIPHDPESYVHRI-GRTGRAGRSGTALLFVTP 357


>gi|268573988|ref|XP_002641971.1| Hypothetical protein CBG16678 [Caenorhabditis briggsae]
          Length = 972

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 76/409 (18%), Positives = 152/409 (37%), Gaps = 45/409 (11%)

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI--LRNIPFS-PT 274
            E     +   A  +    ++  + ++     +        G   + +  L+ + +S PT
Sbjct: 272 IETAEIQKMTKAEVKAYREELDSITVKGIDCPKPIKTFAQCGLNLKMMNVLKKLDYSKPT 331

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVI 326
             Q  AI  I+           I     GSGKTL  L+ M   +          G  AVI
Sbjct: 332 SIQAQAIPAIMSGRDV------IGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVI 385

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +AP   LA Q Y+   K+ +   + V    G +  + +   L+R     A I++ T    
Sbjct: 386 LAPTRELAMQTYKEANKFAKVLGLRVACTYGGVGISEQIADLKR----GAEIVVCTPGRM 441

Query: 387 QDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            D +           ++  +++DE  R   +       K            P  +T++ +
Sbjct: 442 IDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIR------PDKQTVLFS 495

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     +  +  K    KP++ ++   + +   + +  V+  E +K   +   +    E 
Sbjct: 496 ATFPRHMEALARKVLD-KPVEILVGGKSVVCSDVTQNAVICEEHQKLLKLLELLGMYYEQ 554

Query: 499 NF--------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                         +  + L +   +S+A +HG +   D++S +  FK G  K+L+AT+V
Sbjct: 555 GCSIVFVDKQEKADDIVDQLMKTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSV 614

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              G+DV +  +++  +  +     +H++ GR GR            P 
Sbjct: 615 AARGLDVKNLILVVNYDCPNHYEDYVHRV-GRTGRAGRKGYAYTFVLPE 662


>gi|319405816|emb|CBI79446.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3]
          Length = 465

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 83/364 (22%), Positives = 143/364 (39%), Gaps = 47/364 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q   I  ILQ    K  +L I Q   G+GKT   ++ M   +E G       + +I
Sbjct: 29  PTPIQSGTIPHILQ----KRDILGIAQ--TGTGKTASFVLPMLTLLEKGRARARIPRTLI 82

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   KY  N  + V ++ G +    + + LER     A ++I T    
Sbjct: 83  LEPTRELATQVQENFDKYGVNHNLNVALLIGGVSFEQQDRKLER----GADVLIATPGRL 138

Query: 387 QDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRT-- 434
            D  ++ KL+L+     ++DE  R      +   ++           L  +AT  P    
Sbjct: 139 LDHFEHGKLLLLGIEILVIDEADRMLDMGFIPNIERICKLTPFTRQTLFFSATMAPEITK 198

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVII-----PINRIDEVIERLKVVLSEGKKAYWIC 489
           L    L      +IT+  +  K I   ++     P ++   + E +     E K A   C
Sbjct: 199 LTKQFLHSPVYIEITKASSTAKKITQRLVKSGSKPWDKRAILRELIHKEGDELKNAIIFC 258

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         + + E   SL +H   S+  +HG M    + S + +FK+    LL+A+ 
Sbjct: 259 NR--------KKDISELVRSLIKH-NFSVGTLHGDMDQHSRTSTLANFKDNKLTLLVASD 309

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+   S +   +        +H++ GR GR +       +     +K     +S
Sbjct: 310 VASRGLDIPAVSHVFNYDVPTHAEDYIHRI-GRTGRAKRSGKAFTIV----TKADEKYIS 364

Query: 610 VLKN 613
            ++ 
Sbjct: 365 AIEE 368


>gi|307110010|gb|EFN58247.1| hypothetical protein CHLNCDRAFT_30080 [Chlorella variabilis]
          Length = 551

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 86/430 (20%), Positives = 147/430 (34%), Gaps = 49/430 (11%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-- 269
           P+  K+F +  PA    + +E+         MR+      GIP  V           +  
Sbjct: 86  PKFEKNFYYEHPAVTARSEEEVRRY----REMREIHVTGEGIPKPVSNFEEASFPEYVLA 141

Query: 270 -----PF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
                 F  P+  Q       L           +   + GSGKTL  L+     + A   
Sbjct: 142 EIQRAGFTEPSPIQAQGWPMALLGRD------LVGIAETGSGKTLAYLLPGVVHINAQAH 195

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   + +AP   LA Q      ++   ++I    + G  P+  +   L R     
Sbjct: 196 LSPGDGPIVLCLAPTRELAVQIQNECARFGSTSRIKSTCVYGGAPKGPQANDLRR----G 251

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLL 425
             I+I T     D ++           L+L   D     G + +++    Q       LL
Sbjct: 252 VEIVIATPGRLIDFLESRTTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLL 311

Query: 426 MTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     +TL    L +     I           T I       E  ++L  VL +  
Sbjct: 312 WSATWPKEIQTLAREFLNNPYQVLIGSPDLKANHRITQIFDFPAEHEKYQKLVRVLEKEM 371

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               I   +E KK  +          L      +++I HG  S  +++ V+  FK G   
Sbjct: 372 DGRRILIFLETKKGCD-----AVTRQLRMDGWPALSI-HGDKSQHERDWVLAEFKAGKHP 425

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           ++IAT V   G+DV D  ++I  +        +H++ GR GR     +    +     + 
Sbjct: 426 IMIATDVAARGLDVKDIKMVINYDMPSCAEDYVHRI-GRTGRAGASGAAYSFFTAANGRM 484

Query: 604 SYTRLSVLKN 613
           +   + +L+ 
Sbjct: 485 ARQLVQILEE 494


>gi|256088559|ref|XP_002580398.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665968|emb|CAZ36637.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 1476

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 94/448 (20%), Positives = 166/448 (37%), Gaps = 45/448 (10%)

Query: 194  LQKKSFPSIAEAFNIIHNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEI- 251
            LQKK      +   I + P RK    E    A+      +     +  + +R +   +  
Sbjct: 722  LQKKDKLQPIDHSKIEYFPFRKNFYVEVPELAKMSKEDVKAYRASLENIRVRGRECPKPL 781

Query: 252  --GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
               +   +  ++   + RN    PT  Q  A+  I+        M+ I     GSGKTL 
Sbjct: 782  RNWVQAGISSRLLACLKRNNFDKPTPIQCQALPVIM----SGRDMIGI--AKTGSGKTLA 835

Query: 310  ALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
             L+ +   +E         G  A+++AP   LA Q ++  KK  Q        + G    
Sbjct: 836  FLVPLMRHLEHQAPLNPGDGPIALLLAPTRELALQIFKETKKLCQAADARAVCVYGGTGI 895

Query: 362  AHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLK 413
            + +   L+R     A II+ T     D +          ++   V++DE  R        
Sbjct: 896  SEQIAELKR----GAEIIVCTPGRMIDMLAANGGRVTNLHRCSYVVLDEADRMFDLGFEP 951

Query: 414  LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                      ++    P  +TL+ ++     +  +  K     PI+  I   + +   +E
Sbjct: 952  QVM------RIIENCRPDRQTLMFSATFPRQMEILARKVLTL-PIEIQIGGRSVVCSDVE 1004

Query: 474  RLKVVLSEGKKAYWICPQI----EEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMS 526
            +   +LSE +K Y +   +    EE     F    E  + L             +HG + 
Sbjct: 1005 QHAFILSEEEKVYKVLELLGIYQEEGSVLVFVEKQESADELMRVLLKYGYPCLSLHGGID 1064

Query: 527  DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              D++SV+  FK G  +LLIAT+V   G+DV D  ++I  +  +     +H+  GR GR 
Sbjct: 1065 QYDRDSVIMDFKRGNIRLLIATSVAARGLDVTDLLLVINYDCPNHYEDYVHR-CGRTGRA 1123

Query: 587  EEISSCILLYHPPLSKNSYTRLSVLKNT 614
                       P   +++   +   K +
Sbjct: 1124 GRKGFAYTFLTPDQERSAGDVVRAFKQS 1151


>gi|312868913|ref|ZP_07729097.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
           PB013-T2-3]
 gi|311095562|gb|EFQ53822.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
           PB013-T2-3]
          Length = 498

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 137/344 (39%), Gaps = 40/344 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  QE  I  +L+          I Q   G+GKT    + +   V+      QA+I++P 
Sbjct: 25  TPIQEQTIPMVLKGQDV------IGQAQTGTGKTAAFGLPIIEHVDTDNPNIQALIISPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + +  ++  + V+++ G      + K+L+        I++GT    +D I
Sbjct: 79  RELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKH----HPQILVGTPGRLRDHI 134

Query: 391 QYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
             +         L+L   DE    G  + ++   K T             +TL+ ++   
Sbjct: 135 NRHTVKLGHIQTLVLDEADEMLNMGFLEDIEAIIKETPAE---------RQTLLFSATMP 185

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
            +I +I E+       +TV I    +   +     V +   + + I  ++ + ++ +   
Sbjct: 186 PEIKRIGEQFMTNP--ETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPDLTI 243

Query: 500 -FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F     R + L +   +     A IHG ++   +  +M  FKNG   +L+AT V   G+
Sbjct: 244 VFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDRRTKIMKKFKNGDLDILVATDVAARGL 303

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           D+   + +   +      + +H++ GR GR     + +    P 
Sbjct: 304 DISGVTHVYNYDIPSDPDSYVHRI-GRTGRAGHHGTSLTFVTPN 346


>gi|195403478|ref|XP_002060316.1| GJ16043 [Drosophila virilis]
 gi|194140655|gb|EDW57129.1| GJ16043 [Drosophila virilis]
          Length = 605

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 135/368 (36%), Gaps = 41/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  +   ++      N ++ I     GSGKTL  ++     +          G  
Sbjct: 143 EPTPIQAQSWPIVM----SGNNLVGI--AKTGSGKTLAFILPAIVHIRGQAPLERGGGPI 196

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ       +  ++ +    I G  P+  +   L+R       I+I T 
Sbjct: 197 ALVLAPTRELAQQIQSVANDFGSSSSVRNTCIFGGSPRTKQASDLQR----GVEIVIATP 252

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D +Q       +   +++DE  R          +K            P  +TL+ +
Sbjct: 253 GRLLDFLQAGTTNLRRCTYLVLDEADRMMDMGFEPQIRKIFGQIR------PDRQTLMWS 306

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    ++ ++ E   G      +       +  I +   V +E +K   +   +    + 
Sbjct: 307 ATWPKEVRQLAEDFLGNYIHINIGSMELSANHNIRQYVEVCAEHEKGAKLKDLLSHIYDQ 366

Query: 499 N-----------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +  V++          S+  IHG  S +D+++V++ F++G   +L+A
Sbjct: 367 AAMPGKIIIFVATKKKVDKLARFINALGVSVGSIHGDKSQMDRDNVLNDFRSGRANILVA 426

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+     +I  +        +H++ GR GR     +    +    +K +   
Sbjct: 427 TDVAARGLDIDGIKYVINFDFPQSSEDYIHRI-GRTGRNRSTGTSYAFFTRKNAKCARAL 485

Query: 608 LSVLKNTE 615
           + VL+   
Sbjct: 486 IEVLREAN 493


>gi|149914601|ref|ZP_01903131.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b]
 gi|149811394|gb|EDM71229.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b]
          Length = 511

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 142/369 (38%), Gaps = 46/369 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI   L+          +     G+GKT    + M + +  G       +++
Sbjct: 24  DPTPIQAGAIPPALEGRD------ILGIAQTGTGKTASFTLPMLSLLARGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y++N ++   ++ G +    + K +++       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYSKNLKLTKALLIGGVSFKEQDKLIDK----GVDVLICTPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     ++VDE  R      +   ++       + + TP   +T   ++
Sbjct: 134 LLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIER-------IFSLTPFTRQTFFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-------LKVVLSEGKKAYWICPQI 492
               +I +IT     + P++  +       E IE+        +   ++ +K   +   I
Sbjct: 187 TMAPEIERITNTFL-QNPVRIEVARQATASETIEQGVVMFKPSRRERADSEKRDILRAII 245

Query: 493 EEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           + + E         N +  V+  +   +      A IHG +    +   +D F+ G  K+
Sbjct: 246 DAEGEACTNAIVFCNRKVDVDIVSKSLKKHGYDAAPIHGDLDQSQRTRTLDGFRAGDLKI 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+A+ V   G+DV   S +   +        +H++ GR GR       +++  P   KN 
Sbjct: 306 LVASDVAARGLDVPSVSHVFNYDVPGHAEDYVHRI-GRTGRAGRSGKAMMISGPRDDKNL 364

Query: 605 YTRLSVLKN 613
                +++ 
Sbjct: 365 DAIERLIQK 373


>gi|149180848|ref|ZP_01859350.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
 gi|148851367|gb|EDL65515.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
          Length = 496

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 140/373 (37%), Gaps = 27/373 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  QE AI  +++          I Q   G+GKTL  ++ +    +      QA+I+ 
Sbjct: 24  TPTPIQEKAIPAVIKGKDV------IAQAQTGTGKTLAFILPIIENFDFNQQSIQALIVT 77

Query: 329 PIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q   E  K       I V  + G      +   L +       I++GT     
Sbjct: 78  PTRELALQITEEVRKLIRHIEGISVLPVYGGQDVEKQLNKLRK----NVGIVVGTPGRIL 133

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D I    + L  ++        Q L +        ++    TP  R  +L S    D  K
Sbjct: 134 DHIGRGTIDLSELNSLVLDEADQMLHIGFLKEVEMIIRE--TPKTRQTLLFSATIPDEIK 191

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---NFRSVV 504
              K   + P    +       + +E+  V +++  K   +   I+E +      F    
Sbjct: 192 TLAKKHMKSPEYISVERKQGPAKSVEQKAVFVNDRAKQATLIEMIKEYRPYLAVIFCRTK 251

Query: 505 ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            R   L+E   S       +HG +S   +E VM  F++   +LLIAT V   G+DV   +
Sbjct: 252 RRVTKLYEALASEGFMCDELHGDLSQAKREKVMKRFRDAEFQLLIATDVAARGLDVEGIT 311

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP----PLSKNSYTRLSVLKNTEDG 617
            +   +      + +H++ GR GR  E    +  Y P     L++        L     G
Sbjct: 312 HVFNYDIPEDADSYVHRI-GRTGRAGEKGLAVTFYSPQQKDQLAEIEKELNIRLPKQNIG 370

Query: 618 FLIAEEDLKQRKE 630
            +I  +D ++RK 
Sbjct: 371 NIIDRDDTEKRKP 383


>gi|194467658|ref|ZP_03073645.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
 gi|194454694|gb|EDX43591.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
          Length = 497

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 130/344 (37%), Gaps = 40/344 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  QE  I  +L+          I Q   G+GKT    + +   V+      QA+I++P 
Sbjct: 25  TPIQEQTIPMVLEGKDV------IGQAQTGTGKTAAFGLPIIENVDTENPNIQAIIISPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + +  ++  + V+++ G      + K+L++       I++GT    +D I
Sbjct: 79  RELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQ----HPQILVGTPGRLRDHI 134

Query: 391 QYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--LVLT 438
             +         L+L   DE    G  + +   + +       LL +AT  P    + + 
Sbjct: 135 NRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLFSATMPPEIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  +I  K      +    +     ++     +++  +      +  + +     
Sbjct: 195 FMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGRTKR---- 250

Query: 499 NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                  R + L +   +     A IHG ++   +  +M  FKN    +L+AT V   G+
Sbjct: 251 -------RVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGL 303

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           D+   + +   +      + +H++ GR GR       +    P 
Sbjct: 304 DISGVTHVYNYDIPSDPDSYVHRI-GRTGRAGHHGVSLTFVTPN 346


>gi|90408477|ref|ZP_01216636.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
 gi|90310409|gb|EAS38535.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
          Length = 426

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 135/360 (37%), Gaps = 36/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
            P+  QE AI  IL           +     G+GKT    + + A +  G        + 
Sbjct: 23  KPSPIQEQAIPVILSGKDV------MAAAQTGTGKTAGFTLPLLANLMKGERAKANQVRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q +E +  Y QN  +   ++ G +    + + L R       +++ T  
Sbjct: 77  LILTPTRELAAQIHESVCNYGQNLPLRSAVVFGGVKINPQMQLLRR----GVDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      +   +       ++       + L+ ++
Sbjct: 133 RLLDLYQQNAVRFKQLEVLVLDEADRMLDMGFIHDIK------RIIKFLPEKRQNLLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               DI K+  K     P++  + P N   E + +    + + KK+  +   I+E K   
Sbjct: 187 TFSNDIRKLA-KGLVNDPVEISVSPRNTTAESVTQFIYEVDKTKKSPLLSTLIKENKWKQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   + SFK G   +L+AT +   
Sbjct: 246 VLVFSKTKHGANRLVKQLEGRGILSAAIHGNKSQAARTRALASFKEGKITVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++  +  H     +H++ GR GR       I L      K       ++K 
Sbjct: 306 GIDIDQLEQVVNFDLPHVSEDYVHRI-GRTGRAGNKGEAISLVCEDEFKLLKDIEKLIKK 364


>gi|156554532|ref|XP_001605403.1| PREDICTED: similar to LOC556764 protein, partial [Nasonia
           vitripennis]
          Length = 595

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 135/367 (36%), Gaps = 41/367 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            PT  Q       L        M+ I     GSGKTL  ++     +        + G  
Sbjct: 180 EPTSIQAQGWPIAL----SGRDMVGI--ASTGSGKTLSYILPAIVHINSQPKLCRKDGPI 233

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +    +  ++ I    + G  P+  + + L         I+I T 
Sbjct: 234 ALVLAPTRELAQQIQQVADDFGHSSGIKNTCLYGGAPKGSQARDL----DNGVEIVIATP 289

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       +   +++DE  R          +K      ++    P  +TL+ +
Sbjct: 290 GRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRK------IIEQIRPDRQTLMWS 343

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    ++  + E+         V       +  I ++  V  E +K   +   ++E    
Sbjct: 344 ATWPKEVKNLAEEFLKDYAQINVGSLQLSANHNILQIIDVCQEYEKEIKLSTLLKEIMAE 403

Query: 499 N----------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       R V E    +      ++ I HG  +  +++ V+  F++G   +L+AT
Sbjct: 404 KENKTIVFIETKRRVDEITRKMKRDGWPAVCI-HGDKTQQERDWVLQDFRSGKAPILVAT 462

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV D   +I  +        +H++ GR GR ++  +    + P  +  +   +
Sbjct: 463 DVAARGLDVEDVKFVINFDYPSCSEDYVHRI-GRTGRRQKTGTAYTFFTPSNAGKANDLV 521

Query: 609 SVLKNTE 615
            VLK   
Sbjct: 522 QVLKEAN 528


>gi|146305516|ref|YP_001185981.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina ymp]
 gi|145573717|gb|ABP83249.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina ymp]
          Length = 458

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 88/455 (19%), Positives = 172/455 (37%), Gaps = 64/455 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
             T  Q +++  IL+          I Q   GSGKT    I +   +     G QA+++ 
Sbjct: 26  EMTPIQAASLPLILKGRD------LIAQAKTGSGKTAAFGIGLLHPLNPRYFGCQALVLC 79

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I++  +    I V  + G +P   +  +LE      AH+I+GT    Q
Sbjct: 80  PTRELADQVAKEIRRLARAADNIKVLTLCGGVPFGPQIGSLEH----GAHVIVGTPGRIQ 135

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           + ++           L+L   D     G    +    + T             +TL+ ++
Sbjct: 136 EHLRKGTLKVDGLNTLVLDEADRMLDMGFVDSISEIIEQTPAR---------RQTLLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                I ++  +       + V +     D  IE+    ++ G++   +   +   ++  
Sbjct: 187 TYPAGIEQLAARFLRTP--ERVEVEAQHDDGQIEQRFYEIAPGQRMEAVSTLLRHFRKQP 244

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R   +   +  E    S A +HG +   D++ ++  F N +  +L+AT V   
Sbjct: 245 VVAFCATRQQCDELAAQLEAEKISAAALHGDLEQRDRDQILALFANRSLSVLVATDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT------- 606
           G+D+    ++I           +H++ GR GR  E    + L  P  +  +         
Sbjct: 305 GLDIAGLEMVINVELSRDAEVHIHRI-GRSGRAGEKGLALSLVAPAEAGRAQAIETLQGR 363

Query: 607 -----RLSVLKNTEDGFLIAEEDL-------KQRKEGEILG--IKQSGMPKFLIAQPELH 652
                 L   K + +  L     L        + + G+ILG     +G+P   + +  L 
Sbjct: 364 ELAWYPLPAAKASGEPLLPPMHTLCIAAGRKDKLRPGDILGALTGDAGLPGSQVGKIALF 423

Query: 653 D--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           D  + + + R  A+  L +  +   ++G+S+R+ L
Sbjct: 424 DYQAYVAVERDVARQALKRLSE-GKIKGRSLRVRL 457


>gi|150019837|ref|YP_001312091.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149906302|gb|ABR37135.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 525

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 75/364 (20%), Positives = 146/364 (40%), Gaps = 32/364 (8%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           + ++ F+ P++ QE +I   L           I Q   G+GKT    + +   +    G 
Sbjct: 19  ISDLGFTKPSQIQEQSIPVTLSG------ADLIGQAQTGTGKTAAYSLPIITKMSDNRGI 72

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +++I+AP   LA Q  E I++ ++  +I+   + G      + +AL     G   I++GT
Sbjct: 73  KSLILAPTRELAVQVNEEIQRLSKYEKIVTLAVYGGDSIDRQIRALR---KGDVDIVVGT 129

Query: 383 HALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLV 436
                D ++   L L  +     DE         +   Q+       +++ TP   +TL+
Sbjct: 130 PGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQE-------ILSHTPSERQTLL 182

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--- 493
            ++     I+K+ +K          I   +     IE+   +++   +   +C  ++   
Sbjct: 183 FSATMPDPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINNKHRLEALCRLLDLDN 242

Query: 494 EKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                 F       + L +   S    +  +HG M+   + + ++ FK GT  LLIAT V
Sbjct: 243 PSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNLLIATDV 302

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GIDV   + +   +      + +H++ GR GR  +  +   L  P          +V
Sbjct: 303 AARGIDVEGVTHVFNYDLPQDVESYVHRI-GRTGRANKSGTAYSLVTPKDFSMLKQIQNV 361

Query: 611 LKNT 614
            K++
Sbjct: 362 TKSS 365


>gi|319902651|ref|YP_004162379.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417682|gb|ADV44793.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 422

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 131/359 (36%), Gaps = 34/359 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQAVI 326
           +PT  QE +I  +LQ          +     G+GKT    I +   +       G +A+I
Sbjct: 23  TPTPIQEKSIPILLQGKD------LLGCAQTGTGKTAAFSIPILQKLYKTDNRKGIKALI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  + Y + T +   +I G + Q  +   L+R       I+I T    
Sbjct: 77  LTPTRELAIQIGESFEAYGKYTGLKHTVIFGGVGQKPQTDDLKR----GTQILIATPGRL 132

Query: 387 QDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           QD +         L   ++DE  R      +          +L M  T   +TL  ++  
Sbjct: 133 QDLVNQGFINLKTLDFFVLDEADRMLDMGFIHDI-----RRILKMLPTQ-RQTLFFSATM 186

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
             +I  +        P K  + P++   + I +    + + +K   +   ++        
Sbjct: 187 PSEIETLANS-MLSNPAKVEVTPVSSTVDTISQSVYFVEKKEKKDLLIHLLKNTAIESVL 245

Query: 497 -ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  +   ++   +      S   IHG  S   ++  +  FK+ T ++LIAT +   GI
Sbjct: 246 VFTRTKYGADKLARILSKSGISAEAIHGNKSQNARQRALTGFKSHTIRVLIATDIAARGI 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           DV   S +I     +     +H++ GR GR     + +                ++  T
Sbjct: 306 DVEQLSHVINYELPNVPETYVHRI-GRTGRAGHEGTALSFCESEELPYLKDIQKLIGKT 363


>gi|254572992|ref|XP_002493605.1| Essential ATP-dependent RNA helicase of the DEAD-box protein family
           [Pichia pastoris GS115]
 gi|238033404|emb|CAY71426.1| Essential ATP-dependent RNA helicase of the DEAD-box protein family
           [Pichia pastoris GS115]
 gi|328354565|emb|CCA40962.1| ATP-dependent RNA helicase DDX5/DBP2 [Pichia pastoris CBS 7435]
          Length = 537

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 143/384 (37%), Gaps = 47/384 (12%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------ 320
           +  P SPT  Q       L        M+ I     GSGKTL   +     + A      
Sbjct: 118 QGFP-SPTAIQCQGWPMAL----GGKDMVGI--AATGSGKTLSYCLPAIVHINAQPLLKP 170

Query: 321 --GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G  A+++AP   LA Q  +   K+  +++I    + G +P+  + + L R     A I
Sbjct: 171 GDGPVALVLAPTRELAVQIQKECSKFGSSSRIRNTCVYGGVPKGQQIRDLAR----GAEI 226

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTA 428
           +I T     D ++  K        L+L   D     G + +++    Q       L+ +A
Sbjct: 227 VIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 286

Query: 429 TPIP--RTLVLTSLGDIDISKITEKP----AGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           T     + L    L D     +           K +  V+    + D + + L+    + 
Sbjct: 287 TWPKSVQALARDYLHDYIQVNVGSLELAASHNIKQVIEVLSEYEKRDRLTKYLEQASEDK 346

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                +         S  R+  E    L      ++AI HG     +++ V+  F++G  
Sbjct: 347 TSKILVF-------ASTKRTCDELTTYLRSDGWPALAI-HGDKEQRERDWVLQEFRSGKS 398

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +++AT V   GIDV   + ++  +        +H++ GR GR     + +  +    ++
Sbjct: 399 PIMVATDVAARGIDVKGINFVVNYDMPGNIEDYVHRI-GRTGRAGATGTAVSFFTNANAR 457

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLK 626
            +   + +LK       I  EDL+
Sbjct: 458 MADDLVPILKEAN---QIIPEDLQ 478


>gi|255564033|ref|XP_002523015.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223537737|gb|EEF39357.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 956

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 135/342 (39%), Gaps = 44/342 (12%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------EAGGQ 323
            +PT  Q       L++         +     GSGKTL  LI     +       + G  
Sbjct: 509 LAPTPIQAQTWPIALRNRD------IVAIAKTGSGKTLGYLIPAFILLRQCRNNPQNGPT 562

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  + + K+ +++++    + G  P+  + K L R     A I++ T 
Sbjct: 563 VLVLAPTRELATQIQDEVIKFGRSSRVSCTCLYGGAPKGPQLKELTR----GADIVVATP 618

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D ++  K        L+L   D     G + +++    +       L+ TAT    
Sbjct: 619 GRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKE 678

Query: 434 TL-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYW 487
                  +L +   ++I  + E  A +   + V ++P    +  + ++      G K   
Sbjct: 679 VRKIANDLLVNPVQVNIGSVDELAANKSITQYVEVVPQMEKESRLGQILRAQERGSKVII 738

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C        S  R   +   S+   F +  A IHG  S  +++ V++ F++G   +L+A
Sbjct: 739 FC--------STKRLCDQLARSIGHQFGA--AAIHGDKSQGERDWVLNQFRSGKSPILVA 788

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           T V   G+D+ D  ++I  +        +H++ GR GR    
Sbjct: 789 TDVAARGLDIKDIRVVINYDFPTGIEDYVHRI-GRTGRAGAT 829


>gi|58336606|ref|YP_193191.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           NCFM]
 gi|227903163|ref|ZP_04020968.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus
           ATCC 4796]
 gi|58253923|gb|AAV42160.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           NCFM]
 gi|227869149|gb|EEJ76570.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus
           ATCC 4796]
          Length = 495

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/419 (19%), Positives = 152/419 (36%), Gaps = 48/419 (11%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE  I   L+          I Q   G+GKT    + +   ++      QA+
Sbjct: 20  GFEEATPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPILQIIDKKEKAIQAI 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E + +  ++ +  V+++ G      + ++L+   H    I++GT   
Sbjct: 74  IIEPTRELAIQTQEELFRLGRDERAHVQVVYGGADIGRQIRSLK---HHVPSILVGTPGR 130

Query: 386 FQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D ++           ++L   DE    G  Q +           +L  A    +TL+ 
Sbjct: 131 LLDHLKRGTIDLDKVKTVVLDEADEMLDMGFIQDI---------ESILKYAKNRNQTLLF 181

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I +I EK     P    I       ++I++  V   E +K   +C  I+ +  
Sbjct: 182 SATMPKPILRIGEKFMN-NPEIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGP 240

Query: 497 --ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L     +     A IHG +S   + +V+  F+ G   +L+AT V 
Sbjct: 241 DLAVVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVA 300

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+   + +   +      + +H++ GR GR  +    +    P       T   + 
Sbjct: 301 ARGLDISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGQNGISVTFVTPNEIGYMRTIEQLT 359

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           K          +D   R +   L   ++ +   + +    +        +DA  +L   
Sbjct: 360 KKKMSPLRPPTDDQALRGQ---LKQAKAQIEDLINSDLGKYT-------QDASELLDNY 408


>gi|73969095|ref|XP_860442.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 5 [Canis
           familiaris]
          Length = 630

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 151/437 (34%), Gaps = 56/437 (12%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 39  RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 93

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 147

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 148 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 207

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKA 418
           + + LER       I I T     D ++       +   +++DE  R          +K 
Sbjct: 208 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 263

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                      P  +TL+ ++    ++            I +  I    +  +I+ ++ +
Sbjct: 264 VDQIR------PDRQTLMWSATWPKEVRHF---YIMCGEILSECIFAGLVFRLIQLMEEI 314

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++E +    I            +   +               IHG  S  +++ V++ F+
Sbjct: 315 MAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFR 366

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R     +    + P
Sbjct: 367 SGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTP 425

Query: 599 PLSKNSYTRLSVLKNTE 615
              K +   + VL+   
Sbjct: 426 GNLKQARELIKVLEEAN 442


>gi|251778643|ref|ZP_04821563.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082958|gb|EES48848.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 480

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/378 (19%), Positives = 144/378 (38%), Gaps = 44/378 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           + N+ + +P++ QE AI ++L++         +++   GSGKT    I +   +   E  
Sbjct: 18  IDNLGYKTPSEVQEKAIPEVLRNKD------LVVKSQTGSGKTASFGIPLCEKIDWDENK 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++AP   LA Q  E I    +  +I    I G      + + L++    + HI++G
Sbjct: 72  PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ----KTHIVVG 127

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I    L        ++   DE    G  ++++   +      +         
Sbjct: 128 TPGRVLDHIDRGSLDVSKINYFVIDEADEMLNMGFIKQVEAIIRRIPKKRV--------- 178

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP-QI 492
           TL+ ++    +I  + +K    +PI   I   N   + +      +   +K   +    I
Sbjct: 179 TLLFSATIPDEIKNLCDKHMN-RPIDIAIKSQNLTSDNVSHYAYHVGYNQKLDSLNNILI 237

Query: 493 EEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            E  E        +  V+  +        S   IHG M   D+   M+ F+ G  ++L+A
Sbjct: 238 SEMPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   GID+   + +I  +      A +H++ GR GR       +        +     
Sbjct: 298 TDIASRGIDIEGITHVINYDIPVEKEAYVHRI-GRTGRAGAKGVALTFCKDSGDRYLNEI 356

Query: 608 LSVLKNTEDGFLIAEEDL 625
              +     GF +  ++L
Sbjct: 357 EEYI-----GFKLEVKNL 369


>gi|51245542|ref|YP_065426.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
 gi|50876579|emb|CAG36419.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila
           LSv54]
          Length = 632

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/364 (21%), Positives = 133/364 (36%), Gaps = 43/364 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + FS PT  QE AI  +L           I Q   G+GKT    + +   ++     
Sbjct: 70  LVKLGFSQPTPIQEKAIPLLLAG------SDLIGQAQTGTGKTAAFGLPLLNNIDFSKKC 123

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++AP   LAQQ  + +  Y+ +    V ++ G      +   L R     A +++G
Sbjct: 124 VQALVLAPTRELAQQVGDALATYSGDDGRNVLVVYGGSSYQAQVGGLRR----GARVVVG 179

Query: 382 THALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IP 432
           T     D I        Q   L+L   DE    G    ++           +++ TP   
Sbjct: 180 TPGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIE----------TILSQTPKDR 229

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +T++ ++     +  I  +     P    I P   I   IE+   +++   K   I    
Sbjct: 230 QTMLFSATLSSRVMSIANRYL-HSPESISISPKQMIGSSIEQRYYLINNSDKIAAITRVF 288

Query: 493 EE-------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           E               +V E  N L     ++  +  G +S   +  V+  FK G  K+L
Sbjct: 289 EVETVESALIFARTRATVSELANELISRGFAAEGL-SGDLSQEARTRVLSRFKKGQIKVL 347

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+D+ D S +   +        +H++ GR GR     + I L          
Sbjct: 348 VATDVAARGLDIDDISHVFNYDLPEDPEVYVHRI-GRTGRAGRSGTAISLVTLRDRWMHR 406

Query: 606 TRLS 609
               
Sbjct: 407 RIEQ 410


>gi|294898580|ref|XP_002776285.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239883195|gb|EER08101.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 654

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 151/422 (35%), Gaps = 55/422 (13%)

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIP------------FSPTKSQESAIKDILQDMS 289
           L+R++   EI   ++V   I Q     +P             SPT  Q       L    
Sbjct: 179 LVRRRLDIEIIHGVDVPNPITQFEEACLPDYIMVEIQKAGFVSPTPIQVQGWPVAL---- 234

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFI 341
               M+ I   + GSGKTL  L+     + A        G   +++AP   LA Q  E  
Sbjct: 235 SGRDMVGI--AETGSGKTLAFLLPAVVHINAQPYLQKGDGPIVLVLAPTRELALQIKEEC 292

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLI 396
            ++ ++++I      G +P+  + + L+        I I T     D ++       ++ 
Sbjct: 293 DRFGRSSRISNTCCYGGVPRGPQARMLQN----GVEICIATPGRLIDFLESEVTNLRRVT 348

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            +++DE  R                  ++    P  +TL+ ++    D+ ++       +
Sbjct: 349 YLVLDEADRMLDMGFE------PQVRKIVSQIRPDRQTLMWSATWPKDVQQLARDLCNEE 402

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI-------------EEKKESNFRSV 503
           P+   +         I++   V+ E  K+  +   +             +    ++ +  
Sbjct: 403 PVHVTVGQSGHACHNIQQFVEVVEENVKSERLQALMRAVASASGGVFDAKALIFTDTKRC 462

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +    +          IHG     +++ V+  FK+G   ++IAT V   G+DV D   +
Sbjct: 463 ADDITRVLRRDGWPALSIHGDKKQSERDWVLAEFKSGRMPIMIATDVASRGLDVKDVKYV 522

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           I  +        +H++ GR GR     +    +    +K +   + +L+        A E
Sbjct: 523 INYDFPGTVEDYVHRI-GRTGRAGAHGTAYSFFTADKAKLAKPLIGILREASQPVPEALE 581

Query: 624 DL 625
            L
Sbjct: 582 RL 583


>gi|152991450|ref|YP_001357172.1| DEAD-box ATP dependent DNA helicase [Nitratiruptor sp. SB155-2]
 gi|151423311|dbj|BAF70815.1| ATP-dependent RNA helicase, DEAD-box family [Nitratiruptor sp.
           SB155-2]
          Length = 471

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 129/342 (37%), Gaps = 37/342 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
            P+  Q+ AI  +L           + Q   G+GKT    + +   +E  G+  A+++ P
Sbjct: 23  EPSPIQKEAIPVVLAGKD------MVGQAHTGTGKTAAFALPLLNMLELDGEVEALVIVP 76

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I +  +   I    + G    + +   +       A +++ T     D 
Sbjct: 77  TRELATQVSDEIFRLGKYLGIKTATVYGGSSYSRQLNHIA-----NAAVVVATPGRLLDL 131

Query: 390 IQYYK-------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           ++  K       ++L   DE    G     +       T    LL +AT     + L   
Sbjct: 132 LKSGKIELNPKFVVLDEADEMLDMGFLDDIKAIFNYLPTNRQTLLFSATMPQAIKELAQQ 191

Query: 439 SLGDIDISKITEKPAGRKPIKT--VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            L   +   IT+K      IK    ++  +  DE +  ++++  +      I  +     
Sbjct: 192 ILHSPEFISITKKEVTNVNIKQFYYVVDEHERDEAL--IRLLDYKNPTKSIIFCR----- 244

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+R     E    S   +HG M    +E  + +FK G  ++LIAT V   G+D
Sbjct: 245 ---MKIEVDRLAQFLEAQGYSAKGLHGDMQQRQREETIKAFKRGNIEILIATDVAARGLD 301

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + D S +   +      + +H++ GR GR  +    I L  P
Sbjct: 302 ISDVSHVFNYHIPFDPESYVHRI-GRTGRAGKEGIAISLVTP 342


>gi|156119497|ref|NP_001095245.1| putative ATP-dependent RNA helicase an3 [Xenopus laevis]
 gi|113825|sp|P24346|DDX3_XENLA RecName: Full=Putative ATP-dependent RNA helicase an3
 gi|65060|emb|CAA40605.1| ATP dependent RNA helicase [Xenopus laevis]
          Length = 697

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 134/374 (35%), Gaps = 47/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I++      +   +     GSGKT   L+ + + + A G          
Sbjct: 244 PTPVQKHAIPIIIE------KRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLQE 297

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K+   +++   ++ G      + + LER 
Sbjct: 298 NGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLER- 356

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLM 426
                H+++ T     D ++  K+ L       +DE  R          ++        M
Sbjct: 357 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT--M 411

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
               + +T++ ++    +I  +       + I   +  +    E I +  V + E  K  
Sbjct: 412 PPKGVRQTMMFSATFPKEIQILARDFLD-EYIFLAVGRVGSTSENITQKVVWVEEMDKRS 470

Query: 487 WICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           ++   +               +   +       H   +   IHG  S  D+E  +  F++
Sbjct: 471 FLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 530

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++  
Sbjct: 531 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATSFFNEK 589

Query: 600 LSKNSYTRLSVLKN 613
               +   L +L  
Sbjct: 590 NINITKDLLDLLVE 603


>gi|197337466|ref|YP_002157976.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
 gi|197314718|gb|ACH64167.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
          Length = 640

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 27/365 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +PT  Q ++I  +L+          + +   G+GKT    + +   +   +   QA+IMA
Sbjct: 28  APTPIQAASIPLLLEGRD------ALGKAQTGTGKTAAFSLPLLNKINLKQHNPQAIIMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   +N   + V  I G      + +AL R     AHII+GT    +
Sbjct: 82  PTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALSR----GAHIIVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDI 445
           D +   +L L    E H F + +  ++ +      V  +L  A    + ++ ++     +
Sbjct: 138 DLLNRDRLNLG---EVHTFILDEADEMLKMGFVDDVTWILEKAPDTAQRILFSATMPPMV 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
             I ++   R P +  +   N   + +E+   V+   +K   +   +E ++         
Sbjct: 195 KTIVDRYL-RDPARVDVAGTNHTVDKVEQNFWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D+ KNG   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V K+T +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQMRMLRTIERVTKSTMEEIQ 372

Query: 620 IAEED 624
           +   D
Sbjct: 373 LPHRD 377


>gi|28900245|ref|NP_799900.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837460|ref|ZP_01990127.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260361632|ref|ZP_05774659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260880805|ref|ZP_05893160.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260896485|ref|ZP_05904981.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|260899501|ref|ZP_05907896.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|28808556|dbj|BAC61733.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749260|gb|EDM60045.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308089237|gb|EFO38932.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308092075|gb|EFO41770.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308109261|gb|EFO46801.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|308112745|gb|EFO50285.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 522

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 139/373 (37%), Gaps = 41/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  IL+          +     G+GKT    + +   +  G +       A
Sbjct: 23  TPSPIQAKAIPAILEGKDV------MAAAQTGTGKTAGFTLPILERLSNGPRVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +  Y ++  +   ++ G +    +   L +     A +++ T  
Sbjct: 77  LILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRLRK----GADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRK-------ILALLPKQRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +E+        KKA  +   I++     
Sbjct: 186 ATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R            A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++           +H++ GR GR  E+   I L     +   +    +++ 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRI-GRTGRAGEVGKAISLVCALEASELFAIERLIQE 364

Query: 614 TEDGFLIAEEDLK 626
                ++  ++L+
Sbjct: 365 -----VLPRKELE 372


>gi|298504304|gb|ADI83027.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens KN400]
          Length = 460

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 93/446 (20%), Positives = 181/446 (40%), Gaps = 67/446 (15%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ ++  T  Q  ++  IL           I +   GSGKT    I + + ++A    
Sbjct: 19  LASLGYAEMTPIQAHSLPLILAGKDV------IARAKTGSGKTAAFGIGLLSRLDALSFR 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  + T  I +  I G +P   +  +LE      AH++I
Sbjct: 73  VQALVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQLGSLEH----GAHVVI 128

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++           L+L   D     G Q  +           L+  A P  
Sbjct: 129 GTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDIS---------ALIAAAPPKR 179

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I+ ++     R+P++  +  ++  +  IE++   +  G++   +   +
Sbjct: 180 QTLLFSATYPDSIAAMSA-GVQREPVEVSVDEVHG-EGAIEQVFYEVDSGQRIEAVERIL 237

Query: 493 EEKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              +        +      E  N+L     +++AI HG +   +++ V+  F N +  +L
Sbjct: 238 GHYRPESALIFCNTKLECQEVANALAVRGYAALAI-HGDLDQRERDRVLVRFANRSASVL 296

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+D+ + S +I            H++ GR GR  E    + L  P  S+   
Sbjct: 297 VATDVAARGLDIKELSAVINYELTRNPEVHTHRI-GRTGRAGERGLAVSLVTPRESRLIE 355

Query: 606 TRLSVLKNT---EDGFLIAEEDLK-----------------QRKEGEILG--IKQSGMPK 643
           T   V  +T    D   +A    K                 + + G+ILG    + GMP 
Sbjct: 356 TIADVPGSTIVRGDLSTLAPLTAKPPLPPMVTLCIDGGRKNKLRPGDILGALTGEGGMPA 415

Query: 644 FLIAQPELHD--SLLEIARKDAKHIL 667
             + + ++ D  + + IAR+ ++  L
Sbjct: 416 SEVGKIDVFDFFTYVAIARQSSEQAL 441


>gi|116072449|ref|ZP_01469716.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
 gi|116064971|gb|EAU70730.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
          Length = 607

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 132/343 (38%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q++A  +++           + Q   G+GKT    + +   +E+G    Q +++A
Sbjct: 79  DPSPIQKAAFPELMLGRD------LVGQAQTGTGKTAAFALPLLERLESGRKTPQVLVLA 132

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  K Y   +  + V  + G      +   L R       +++GT     
Sbjct: 133 PTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRR----GVDVVVGTPGRVM 188

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP--RTL 435
           D ++   L        +L   DE  R G    ++    Q      V+L +AT  P  R L
Sbjct: 189 DHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLFSATMPPEIRRL 248

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D     I  K    K I+   I +    ++    +V+ + G +   I  +    
Sbjct: 249 SKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEALQRVLDACGGEGVIIFART--- 305

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                + +        E     +A+++G +    +E  ++  ++G+  +L+AT V   G+
Sbjct: 306 -----KVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGL 360

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV    ++I  +      A +H++ GR GR       +L   P
Sbjct: 361 DVERIGLVINYDMPFDSEAYVHRI-GRTGRAGRTGEAVLFMTP 402


>gi|194751055|ref|XP_001957842.1| GF23818 [Drosophila ananassae]
 gi|190625124|gb|EDV40648.1| GF23818 [Drosophila ananassae]
          Length = 795

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/395 (17%), Positives = 140/395 (35%), Gaps = 44/395 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              +  + + + +     PT  Q  A+   L           I     GSGKT   +  +
Sbjct: 270 FGFDEPLLKAVRKAEYTQPTPIQAQAVPTALSGRD------IIGIAKTGSGKTAAFIWPL 323

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   +I+AP   L+ Q Y   KK+ +   + V    G   +  + K
Sbjct: 324 LMHLMDQKELQPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSK 383

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAP 421
           ALE+     A I++ T     D ++       ++  +++DE  R          +     
Sbjct: 384 ALEQ----GAEIVVATPGRMIDMVKMKATNLKRVTFLVLDEADRMFHMGFEPQVRSICNH 439

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                   P  +TL+ ++     I ++  +     P++ V   +N  ++ I +   V   
Sbjct: 440 VR------PDRQTLLFSATFKKRIERLA-RDVLTDPVRIVQGDLNEANQDITQSVFVFPN 492

Query: 482 GKKAY--WICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
             + +   +C  ++   E         ++  E   +       +  ++HG M   D+  V
Sbjct: 493 PLQKWNWLLCHLVKFLSEGSVLIFVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKV 552

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  FK   C +L+AT V   G+D+     ++  +         H++ GR GR  E  +  
Sbjct: 553 ITQFKKKECDILVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRI-GRTGRAGEKGNAF 611

Query: 594 LLYHPPLSKNSYTRLSVLKNT-----EDGFLIAEE 623
            L      + +   +  L+       ED   +A +
Sbjct: 612 TLVTDKDKEFAGHLVRNLEGADQQVPEDLMELAMK 646


>gi|303328313|ref|ZP_07358751.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
 gi|302861643|gb|EFL84579.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
          Length = 593

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 93/444 (20%), Positives = 161/444 (36%), Gaps = 68/444 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            P+  Q  A+  +L           + Q   G+GKT    + +   V +G   QA+++ P
Sbjct: 25  EPSPIQVLAVPALLAGRD------AVGQAQTGTGKTAAFGLPILEKVISGKGVQALVLCP 78

Query: 330 IGILAQQHYEFIKK-YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q  E + K   +   + +  + G      + +AL +     A +++GT     D
Sbjct: 79  TRELAIQVAEELSKLAARKKGVTILPVYGGQLIERQFRALAK----GAQVVVGTPGRIID 134

Query: 389 SIQYYKLILVIVD--------EQHRFGVQQRLKLTQKATA--PHVLLMTAT--PIPRTLV 436
            +Q   L L  VD        E    G ++ ++   + T      +L +AT  P  R L 
Sbjct: 135 HLQRGTLRLDEVDVVVLDEADEMLDMGFREDIEAILERTPDGCQRILFSATMPPPIRELS 194

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              L + ++  I  K      I+     +    ++    +V+ S+G +   +        
Sbjct: 195 KRFLREPEMLTIAHKMLTIPAIEQTYYEVRPYQKMDALCRVLDSQGFRKALVF------- 247

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            S  R V E    L +    S  + HG ++   ++ VM  F+    ++L+AT V   GID
Sbjct: 248 CSTKRGVDEVTTHLQQRGYQSDGL-HGDLAQAQRDRVMQRFRTEGLEILVATDVAARGID 306

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V D   +I  +  H     +H++ GR GR   + S          +  Y    +++ T  
Sbjct: 307 VDDVDAVINYDMPHDVEKYVHRV-GRTGRAGRVGSAFTFVTM---REQYKLRDIIRCT-- 360

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
                    K R       IKQ  +P            LLE  R+             +V
Sbjct: 361 ---------KAR-------IKQGRLPTLRDVDNIRTSRLLEEVRQ-------------TV 391

Query: 677 RGQSIRILLYLYQYNEAFQFIRAG 700
              +    L L +   A +F   G
Sbjct: 392 EAGTPERWLALVEDFLAERFPEGG 415


>gi|74152734|dbj|BAE42635.1| unnamed protein product [Mus musculus]
          Length = 929

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/465 (18%), Positives = 155/465 (33%), Gaps = 61/465 (13%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---- 254
            P I  +   I  P   K+F       E      L   Q+  L  +   +     P    
Sbjct: 200 LPPIDHS--EIDYPPFEKNF-----YNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPG 252

Query: 255 -----INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                   + ++  +I ++    PT  Q   +   L        M+ I     GSGKT  
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAA 306

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            +  M   +          G  AVI+ P   L QQ +   K++ +   +    + G    
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + KAL+      A I++ T     D ++           L+    D     G + +++
Sbjct: 367 WEQAKALQE----GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                           P  +TL+ ++     I K+  +     PI+ V   I   +E + 
Sbjct: 423 SIASHVR---------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVT 472

Query: 474 RLKVVLSEGK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++  +L  G  K  W+  ++ E             ++  E   S  +    ++ ++HG M
Sbjct: 473 QIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELASNLKQEGHNLGLLHGDM 532

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              +   V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 533 DQSEGNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGR 591

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             E      L  P  S  +   +  L+           DL  +  
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA 636


>gi|47217137|emb|CAG02638.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 602

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/390 (18%), Positives = 142/390 (36%), Gaps = 51/390 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA------------MAAAVEA 320
           PT  Q+ AI  I      K++   +     GSGKT   L+                A+++
Sbjct: 150 PTPVQKYAIPII------KSKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGDALQAIKS 203

Query: 321 GGQ-------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            GQ             ++++AP   LA Q Y+  +K+   +++   ++ G      + + 
Sbjct: 204 SGQENGRYGRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRD 263

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPH 422
           LER      H+++ T     D ++  K+ L      ++DE  R          ++     
Sbjct: 264 LER----GCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQD 319

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
              M    I +T++ ++    +I  +  +      I   +  +    E I +  V + E 
Sbjct: 320 T--MPPKGIRQTMMFSATFPKEIQILA-RDFLEDYIFLAVGRVGSTSENITQKVVWVEEL 376

Query: 483 KKAYWICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            K  ++   +               +   +           +   IHG  S  D+E  + 
Sbjct: 377 DKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALH 436

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G C +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      
Sbjct: 437 QFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATSF 495

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           ++   S  +   L +L   + G     E L
Sbjct: 496 FNDKNSNITKDLLDLLVEAKQGIPTWLESL 525


>gi|117919262|ref|YP_868454.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117611594|gb|ABK47048.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 578

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 137/358 (38%), Gaps = 36/358 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQAQAIPAVLTGKDV------MAAAQTGTGKTAGFTLPLLELLSKGNKAKAGQIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +   +   ++ G +P   + + L         +++ T  
Sbjct: 77  LVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLRH----GVDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 133 RLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKK-------ILAMLPAKRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K    +P++  + P N     +++    + + +K+  +   I+++    
Sbjct: 186 ATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQEDWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R          S A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           G+D+     ++  +  +     +H++ GR GR   +   + L     +K       ++
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGALGQAVSLVSSEETKLLRDIERLI 362


>gi|330829254|ref|YP_004392206.1| DEAD/DEAH box helicase domain-containing protein [Aeromonas veronii
           B565]
 gi|328804390|gb|AEB49589.1| DEAD/DEAH box helicase domain protein [Aeromonas veronii B565]
          Length = 633

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 85/423 (20%), Positives = 159/423 (37%), Gaps = 47/423 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L+++ +  P+  Q +AI  ++           + Q   G+GKT    + + + +EAG   
Sbjct: 23  LQDVGYERPSPIQAAAIPHLMAGHD------LLGQAQTGTGKTAAFALPLLSRLEAGNRN 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E  ++Y  +      + I G      + +AL R     A +++
Sbjct: 77  TQILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGGASYETQTRALRR----GAQVVV 132

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATP 430
           GT     D I+   L        +L   DE  R G    +     Q  +   V L +AT 
Sbjct: 133 GTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPSTRQVALFSATM 192

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
             +   +    L      KI  K A    I+     +  + ++    +++  E  +A  +
Sbjct: 193 PEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHKLDAMTRLLEVESYEALLV 252

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +         ++  E           +   +HG +    +E  +D  + G   +LIAT
Sbjct: 253 FVRT--------KNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIAT 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V+  G+DV   + ++  +  +   + +H++ GR GR       IL   P          
Sbjct: 305 DVVARGLDVERITHVVNYDIPYDTESYVHRI-GRTGRAGRKGEAILFVAP-------RER 356

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHIL 667
            +L+  E     A E +K     +I    Q  + KF    +  +    LEI       ++
Sbjct: 357 RMLRAIEHATRQAIEPMKMPSTEDI---NQHRLAKFKERIRETMMGEELEIYHNLVNELI 413

Query: 668 TQD 670
            +D
Sbjct: 414 EED 416


>gi|313114933|ref|ZP_07800430.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622755|gb|EFQ06213.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 395

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 144/374 (38%), Gaps = 36/374 (9%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
                K +  + F+  T+ QE  I  ++           I +   G+GKT    I +A  
Sbjct: 9   SDAIHKAVERMGFAEMTEIQEKTIPVMMAGYDV------IAKAPTGTGKTCAFGIPVAEH 62

Query: 318 V---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAH 373
           +       QAVIMAP   LAQQ  + +++ T     + V  + G      + K L     
Sbjct: 63  ILPENKYPQAVIMAPTRELAQQIAQELEELTYFMPEVQVACVYGGANMEKQAKRLAE--- 119

Query: 374 GQAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFG-VQQRLKLTQKATAPHVL 424
               I++ T     D  +++        +++L   DE    G  +    + +   A   L
Sbjct: 120 -GCQIVVATPGRLMDHYKHHSIDISHVTQIVLDEADEMLNMGFYKDVRHIIEMMKARKSL 178

Query: 425 LMTATPIPRTLV---LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            M +  I R ++        + +   +  K   +  I   ++  +  +++ +  ++++ E
Sbjct: 179 SMFSATISREVMDIGWLYQHNAEEITVQPKEESQPKITQYMLETSGRNKLSDLAQIIIGE 238

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
             K   +          + +       +       S+  +HG +S  ++  +M +F++G 
Sbjct: 239 NYKRVMVF--------CDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQNFRDGK 290

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   GIDV D   +I  +         H++ GR GR ++     L Y P   
Sbjct: 291 LAILVATDVAARGIDVSDVDAVINYDVPSENEHYTHRI-GRTGRAKKEGVSYLFYVPEEK 349

Query: 602 KNSYTRLSVLKNTE 615
           K     L + +NT+
Sbjct: 350 KRVQELLRLTRNTD 363


>gi|332031410|gb|EGI70923.1| Putative ATP-dependent RNA helicase DDX46 [Acromyrmex echinatior]
          Length = 1013

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 138/370 (37%), Gaps = 42/370 (11%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           +L+ + +  PT  Q  AI  I+           I     GSGKTL  L+ M   +     
Sbjct: 365 VLKKLGYEKPTPIQCQAIPAIMSGRD------LIGIAKTGSGKTLAFLLPMFRHILDQPP 418

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  A+IM P   L  Q     KK+T++  +    + G    + +   L+R     
Sbjct: 419 LADGDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAELKR----G 474

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R                  ++  
Sbjct: 475 AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVM------RIMEN 528

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++     +  +  +    +P++  +   + + + +E+  VVL E +K Y 
Sbjct: 529 VRPDRQTVLFSATFPRQMEALARR-ILTRPVEVQVGGRSVVCKDVEQHVVVLEEDQKFYK 587

Query: 488 ICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +   +   ++        + +   +         + S   +HG +   D++S +  FK G
Sbjct: 588 LLEILGHYQDKGSTIIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAG 647

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             KLL+AT+V   G+DV    +++  +  +     +H+  GR GR               
Sbjct: 648 RTKLLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHR-CGRTGRAGNKGYAYTFITSEQ 706

Query: 601 SKNSYTRLSV 610
            + +   L  
Sbjct: 707 ERYAGDILRA 716


>gi|227528896|ref|ZP_03958945.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
           ATCC 49540]
 gi|227351170|gb|EEJ41461.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
           ATCC 49540]
          Length = 501

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 131/352 (37%), Gaps = 34/352 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  QE  I  +L+          I Q   G+GKT    + +   V+      QA+I++P 
Sbjct: 25  TPIQEQTIPMVLKGQDV------IGQAQTGTGKTAAFGLPIIEHVDTDNPNIQAIIISPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + +  ++  + V+++ G      + + L++       I++GT    +D +
Sbjct: 79  RELAIQTQEELFRLGKDKHVRVQVVYGGADIRRQIRNLKQ----HPQILVGTPGRLRDHL 134

Query: 391 QYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT--LVLT 438
             +         L+L   DE    G        + Q       LL +AT  P    + + 
Sbjct: 135 NRHTVKLDHIKTLVLDEADEMLNMGFLDDIEAIIDQTPADRQTLLFSATMPPEIKKIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D  + +I  K      +    +     ++     +++  +      +  + + + + 
Sbjct: 195 FMTDPTMVRIKAKELTTDLVDQYYVKARDYEKFDIMTRLIDVQDPDLTIVFGRTKRRVDE 254

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             R +V R          + A IHG +S   +  +M  FK+G   +L+AT V   G+D+ 
Sbjct: 255 LSRGLVAR--------GYNAAGIHGDLSQDRRTKIMKKFKHGELDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
             + +   +      + +H++ GR GR       +    P           +
Sbjct: 307 GVTHVYNYDIPSDPDSYVHRI-GRTGRAGHHGVSLTFVTPNEMDYLREIEKL 357


>gi|124491306|gb|ABN12944.1| Lia2p [Tetrahymena thermophila]
          Length = 522

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/376 (20%), Positives = 146/376 (38%), Gaps = 39/376 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            P+  Q  A   +L           I   + GSGKTL  L+     + A        G  
Sbjct: 47  KPSPIQSLAFPVVLSGHD------LIGIAETGSGKTLSFLLPSIVHINAQPTVKKGDGPI 100

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q     +++ +++++    I G   +  +R  L++       ++I T 
Sbjct: 101 VLVLAPTRELAMQIERESERFGKSSKLKCACIYGGADKYSQRALLQQ----GVDVVIATP 156

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       ++  +++DE  R          +K      +L    P  +TL+ +
Sbjct: 157 GRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRK------ILGQIRPDRQTLMFS 210

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +    ++  + +      P+   I      I+E I+++  V  + KK   +  Q++   +
Sbjct: 211 ATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVTDQSKKINQLIKQLDCLTQ 270

Query: 498 SNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +        +   E  + +          IHG  +  D++ VM+ FK+G C++LIAT V
Sbjct: 271 KDKVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFKSGECRILIATDV 330

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE-ISSCILLYHPPLSKNSYTRLS 609
              G+DV D S +   +        +H + GR GR      +   L      K S   + 
Sbjct: 331 ASRGLDVKDVSHVFNYDFPKVMEDYVHSI-GRTGRAGAYGCAVSFLTFEDDKKISREYVQ 389

Query: 610 VLKNTEDGFLIAEEDL 625
           +L + +    I   DL
Sbjct: 390 MLHDAKQEIPIDLLDL 405


>gi|168180793|ref|ZP_02615457.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|226950212|ref|YP_002805303.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum A2 str. Kyoto]
 gi|182668220|gb|EDT80199.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|226841562|gb|ACO84228.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 524

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/367 (20%), Positives = 149/367 (40%), Gaps = 38/367 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----E 319
           ++++ F  P+  QE +I  +L+          I Q   G+GKTL     + +A+     +
Sbjct: 19  IQHMGFETPSAIQEKSIPVVLEG------ADVIAQAQTGTGKTLAFGAPVISALCDKEKK 72

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G +A+++ P   LA Q  + +K+ ++ ++  V  + G      + K ++        I+
Sbjct: 73  KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS----GVDIV 128

Query: 380 IGTHALFQDSIQYYKLILVIVD--------EQHRFGVQQRLKLTQKAT--APHVLLMTAT 429
           +GT     D I    L L  +D        E    G  + ++   ++T      +L +AT
Sbjct: 129 VGTPGRVLDHINRRTLKLGGIDFLVLDEADEMLNMGFIEDIETIMESTSEEKQTMLFSAT 188

Query: 430 ---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
              PI +  +     D++   I +K      I      +   D++    +++ SE  ++ 
Sbjct: 189 MPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCRIIDSEEPESA 248

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            I  +         +  V+      +    ++  +HG MS   + + +  FK  T   L+
Sbjct: 249 IIFCRT--------KRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   GIDV + S +I  +      + +H++ GR GR ++  +   L  P    +   
Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRI-GRTGRADKEGTAYSLVTPREVSSIRQ 359

Query: 607 RLSVLKN 613
              + K+
Sbjct: 360 IERITKS 366


>gi|197105174|ref|YP_002130551.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
 gi|196478594|gb|ACG78122.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
          Length = 513

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 81/363 (22%), Positives = 132/363 (36%), Gaps = 42/363 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVIM 327
           T  Q  AI   LQ          +     G+GKT    + M   + AG       +A+++
Sbjct: 26  TPIQAEAIPMALQGRDV------LGIAQTGTGKTAAFTLPMIDRLAAGRAKARMPRALVI 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA Q     +KY    ++   ++ G +    + + L+R       ++I T     
Sbjct: 80  APTRELADQVSASFEKYAMGQKLTWALLIGGVSFKDQEQKLDR----GVDVLIATPGRLL 135

Query: 388 DSIQYYKLIL-----VIVDEQHRFGVQQRLK-----LTQKATAPHVLLMTATPIPRTLVL 437
           D  +  KL++     ++VDE  R      +                L  +AT  P    L
Sbjct: 136 DHFERGKLLMTGVQIMVVDEADRMLDMGFIPDLERIFKLTPAKKQTLFFSATMPPEITRL 195

Query: 438 TSLGDIDISKI-TEKPAGRKPIKT---VIIPINRIDEVIERLKVVLSEG--KKAYWICPQ 491
           T     D  +I   +PA      T   V IP          L+ ++           C +
Sbjct: 196 TKQFLNDPVRIEASRPATTAETITQYLVRIPSADPKAKRTALRELIGRAEINNGIVFCNR 255

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
             E              SL +H   + AI HG +    +   ++SF+NG  KLL A+ V 
Sbjct: 256 KTEVDI--------VAKSLKKHGFDAAAI-HGDLDQATRMRTLESFRNGELKLLCASDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+   S +   +  H     +H++ GR GR        ++  P  SKN    L ++
Sbjct: 307 ARGLDIPAVSHVFNFDVPHHADDYVHRI-GRTGRAGRTGEAFMIVTPADSKNLDKVLKLI 365

Query: 612 KNT 614
             T
Sbjct: 366 GKT 368


>gi|319783267|ref|YP_004142743.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169155|gb|ADV12693.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 520

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/367 (20%), Positives = 138/367 (37%), Gaps = 47/367 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI   L           +     G+GKT   ++ M   +E G       + +
Sbjct: 23  QPTPIQAGAIPHALLGKD------ILGIAQTGTGKTASFVLPMLTRLENGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   +Y +N ++ + ++ G +    + K LER       ++I T   
Sbjct: 77  ILEPTRELAAQVEENFIRYGKNHKLNIALLIGGVSFDEQNKKLER----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D  +  KL+L  V+        + L +        +  M      +TL  ++    +I
Sbjct: 133 LLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMI-PFTRQTLFFSATMPPEI 191

Query: 446 SKITEKPAGRKPIKTVII-------------------PINRIDEVIERLKVVLSEGKKAY 486
           +K+TEK     P++  +                    P ++ + +   +K   +E K A 
Sbjct: 192 TKLTEKFL-HAPVRVEVSKAASAATNITQRLVKSGSKPWDKRETLRNLIKAEDAELKNAI 250

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C +  E        V E F SL ++       +HG M    +  ++ +F++G  + L+
Sbjct: 251 IFCNRKIE--------VSELFRSLLKY-DFDAGALHGDMDQRARMQMLANFRDGKLRYLV 301

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           A+ V   G+D+ D S +   +        +H++ GR GR         +     +K    
Sbjct: 302 ASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRI-GRTGRAGRSGKSFTIATKSDTKYIDA 360

Query: 607 RLSVLKN 613
              ++ N
Sbjct: 361 IERLIGN 367


>gi|300716861|ref|YP_003741664.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299062697|emb|CAX59817.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 459

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 77/461 (16%), Positives = 165/461 (35%), Gaps = 62/461 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + + T  Q +A+  IL+    +       Q   GSGKT    + +   ++     
Sbjct: 18  LNELGYHTMTPVQAAALPAILEGKDVR------AQAKTGSGKTAAFGLGVLHRIDVTQFV 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + +++  +    I +  + G  P   +R +L        HI++
Sbjct: 72  TQSLVLCPTRELADQVAKELRRLARFAANIKILTLCGGQPMGAQRDSLVHA----PHIVV 127

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++           L+L   D     G ++ +   +     +   LL +AT 
Sbjct: 128 GTPGRILDHLKRETLKLDQIGTLVLDEADRMLEMGFREDIEEIIKYCPASRQTLLFSATW 187

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKP-IKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                 ++     +   +        P I          +++   + ++  E   +  + 
Sbjct: 188 PQDIARISQNIQREPVAVETDVVSDLPTIDQRFYEAGAREKLTALIGLLSDEKPSSCVVF 247

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +   +      +    S   +HG +   D++ V+  F NG+C++L+AT 
Sbjct: 248 --------CNTKRECDDVAYALDSAKISALALHGDLEQRDRDQVLIQFANGSCRVLVATD 299

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+   ++++           +H++ GR  R       I    P     ++    
Sbjct: 300 VAARGLDIKSLAMVVNYQLSFDPEVHVHRI-GRTARAGAEGCAISFVAPDEMVRAHALED 358

Query: 610 VLKNTEDGFLIAE---------------------EDLKQRKEGEILG--IKQSGMPKFLI 646
            L+       ++E                        K R  G+ILG     +G+   +I
Sbjct: 359 FLQMKLSWHKVSELKSVAAQPLLAEMATLSLDGGRKAKIR-PGDILGALTGDAGLSSDVI 417

Query: 647 AQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            + ++    + + I +  A+  + Q      ++G+S R  L
Sbjct: 418 GKIDIAPTQAYVAIRQDTARQAMKQL-QQVKIKGKSCRARL 457


>gi|119480453|ref|XP_001260255.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|134034069|sp|A1DG51|DBP3_NEOFI RecName: Full=ATP-dependent RNA helicase dbp3
 gi|119408409|gb|EAW18358.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 503

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 88/396 (22%), Positives = 158/396 (39%), Gaps = 48/396 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           SPT  Q +    +            I   + GSGKTL   +     +   G+        
Sbjct: 107 SPTPIQSATWPLLFAGRDV------IGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARP 160

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            AVI++P   LA Q Y+ + K+  +  I V  I G + +  +R+AL+      A I++ T
Sbjct: 161 AAVIISPTRELAMQIYDQLSKFGASVDIRVTCIYGGVKKDEQREALK-----TAAIVVAT 215

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLT---QKATAPHVLLMTATPI 431
               +D     S+   K+  +++DE  R    G +Q +K        +    ++ TAT  
Sbjct: 216 PGRLKDLQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRSMPDSKRQTVMFTATWP 275

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTV---IIPINRIDEVIERLKVVLSEGKKAY 486
           P  R L  T +       I   P+      T    ++ + +  E   RL  +L+  ++  
Sbjct: 276 PSVRDLAATFMTSAVTVTIGGDPSADPRANTRIKQVVEVVKPQEKEARLVQLLNRSQRGA 335

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +C ++       ++    R   L       +A IHG ++  ++   +++FK G   +L+
Sbjct: 336 AVCDKV--LVFCLYKKEAVRVERLLRTKNFKVAGIHGDLNQHERFKSLEAFKTGAATVLV 393

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+    ++I           +H++ GR GR       I L+       S  
Sbjct: 394 ATDVAARGLDIPSVKLVINVTFPLTVEDYVHRI-GRTGRAGADGHAITLFTETDKAQSGA 452

Query: 607 RLSVLKNTEDGFLIAEEDL--KQRKEGEILGIKQSG 640
            ++VL+        A++D+     K G  +  KQ G
Sbjct: 453 LINVLRA-------AKQDVPDALLKFGTTVKKKQHG 481


>gi|312959777|ref|ZP_07774293.1| RNA-binding:Dead/DEAH box helicase [Pseudomonas fluorescens WH6]
 gi|311285943|gb|EFQ64508.1| RNA-binding:Dead/DEAH box helicase [Pseudomonas fluorescens WH6]
          Length = 557

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 147/392 (37%), Gaps = 44/392 (11%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N+   I   ++      P+  Q+ +I  I+           I Q   G+GKT    
Sbjct: 8   FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQD------MIGQAQTGTGKTAAFA 61

Query: 312 IAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKA 367
           + +   ++      QA+I+AP   LA Q     + Y  Q   + V  + G  P   + KA
Sbjct: 62  LPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKA 121

Query: 368 LERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKAT 419
           +       A I++ T     D ++           L+L   DE  + G    L++  KA 
Sbjct: 122 IRN----GAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKAL 177

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
                     P  +T++ ++     I  I E+   R P    I    +    IE+  +++
Sbjct: 178 P---------PTRQTVLFSATLPQSIRAIAERHL-RDPQHVKIQTKTQTVTAIEQAHLLV 227

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESV 533
              +K   +   +E +        V          S  E      A ++G ++   +E V
Sbjct: 228 HADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERV 287

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +DS K+G   +++AT V   G+DV   + +   +  +   + +H++ GR GR       +
Sbjct: 288 IDSLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGREGRAL 346

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           LL  P         L V++    G  +AE  L
Sbjct: 347 LLVTPRE----RRMLQVIERVT-GQKVAEVRL 373


>gi|237796237|ref|YP_002863789.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
 gi|229263626|gb|ACQ54659.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
          Length = 524

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/367 (20%), Positives = 149/367 (40%), Gaps = 38/367 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----E 319
           ++++ F  P+  QE +I  +L+          I Q   G+GKTL     + +A+     +
Sbjct: 19  IQHMGFETPSAIQEKSIPVVLEG------ADVIAQAQTGTGKTLAFGAPVISALCDKEKK 72

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G +A+++ P   LA Q  + +K+ ++ ++  V  + G      + K ++        I+
Sbjct: 73  KGVKALVLTPTRELALQIKDELKRLSEYSKTKVLPVYGGESIERQIKDIKS----GVDIV 128

Query: 380 IGTHALFQDSIQYYKLILVIVD--------EQHRFGVQQRLKLTQKAT--APHVLLMTAT 429
           +GT     D I    L L  +D        E    G  + ++   ++T      +L +AT
Sbjct: 129 VGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTMLFSAT 188

Query: 430 ---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
              PI +  +     D++   I +K      I      +   D++    +++ SE  ++ 
Sbjct: 189 MPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCRIIDSEEPESA 248

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            I  +         +  V+      +    ++  +HG MS   + + +  FK  T   L+
Sbjct: 249 IIFCRT--------KRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   GIDV + S +I  +      + +H++ GR GR ++  +   L  P    +   
Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRI-GRTGRADKEGTAYSLVTPREVSSIRQ 359

Query: 607 RLSVLKN 613
              + K+
Sbjct: 360 IERITKS 366


>gi|307278457|ref|ZP_07559532.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
 gi|306504963|gb|EFM74158.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
          Length = 536

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 129/346 (37%), Gaps = 35/346 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  Q   I   L           I Q   G+GKT    + M   ++A     Q +
Sbjct: 41  GFEEATPIQSETIPLALAGKDV------IGQAQTGTGKTAAFGLPMLNKIDADNRVIQGL 94

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E + +  ++ +I V+ + G      + + L+     + HI++GT   
Sbjct: 95  VIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKD----RPHIVVGTPGR 150

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--R 433
             D I    L L  V        DE    G  + +   ++Q       LL +AT  P  +
Sbjct: 151 LLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAIK 210

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + +  +   +  KI  K      I    +     ++     +++  +  +   +  +  
Sbjct: 211 NIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPELTIVFGRT- 269

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+      E        IHG +S   + SV+ SFKNG   +L+AT V   
Sbjct: 270 -------KRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAAR 322

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 323 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKGGMSVTFVTPN 367


>gi|217968880|ref|YP_002354114.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217506207|gb|ACK53218.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 441

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 123/352 (34%), Gaps = 26/352 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +PT  Q+ AI   +           ++    GSGKT    +     +         G + 
Sbjct: 23  TPTPVQQRAIPAAIAGRD------LLVSSHTGSGKTAAFTLPALNRIIDRRPAPGSGPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LAQQ  + ++ Y +    +    + G  P   + K L+R    Q  +++ T 
Sbjct: 77  LVLTPTRELAQQVEKAVQTYGKALRWLNTACLVGGAPMFAQIKQLQR----QCDVVVATP 132

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +   K+ L  V E        R+     A     ++       +TL+ ++  D 
Sbjct: 133 GRLLDHLTRRKIKLSDV-EVLILDEADRMLDMGFAEDIDAIVAATPAKRQTLLFSATLDG 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNF 500
            +  +  +         + +      ++ +RL      G K+  +   + E    +   F
Sbjct: 192 VVGSMATRMTRDAERIEIEVAQEDRGQIEQRLMFADDLGHKSRLLHALLGEDGMNQAVVF 251

Query: 501 RSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +     + L         S A +HG M    +   +D  + G   +L+AT V   GIDV
Sbjct: 252 TATKRSADELSLALQEKGISAAALHGDMHQTQRNRTLDRLRQGRIGVLVATDVAARGIDV 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
              S +I  +        +H++ GR GR       I L  P  +        
Sbjct: 312 AGISHVINFDPPRQAEDYVHRI-GRTGRAGRDGIAITLSGPRETGLIRAIER 362


>gi|29375434|ref|NP_814588.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis V583]
 gi|227520091|ref|ZP_03950140.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX0104]
 gi|227554958|ref|ZP_03985005.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           HH22]
 gi|229546689|ref|ZP_04435414.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX1322]
 gi|229548784|ref|ZP_04437509.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           ATCC 29200]
 gi|293383725|ref|ZP_06629632.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|293388799|ref|ZP_06633292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|307267925|ref|ZP_07549313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|307271845|ref|ZP_07553113.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|307275145|ref|ZP_07556297.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|307286655|ref|ZP_07566741.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|307290778|ref|ZP_07570673.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|312901614|ref|ZP_07760885.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|312904406|ref|ZP_07763566.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|312907060|ref|ZP_07766056.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|312952884|ref|ZP_07771745.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|312978684|ref|ZP_07790411.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|29342894|gb|AAO80658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis V583]
 gi|227072435|gb|EEI10398.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX0104]
 gi|227175901|gb|EEI56873.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           HH22]
 gi|229306092|gb|EEN72088.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           ATCC 29200]
 gi|229308195|gb|EEN74182.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX1322]
 gi|291078801|gb|EFE16165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|291081956|gb|EFE18919.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|306498159|gb|EFM67681.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|306502133|gb|EFM71417.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|306508173|gb|EFM77291.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|306511351|gb|EFM80353.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|306515566|gb|EFM84093.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|310627045|gb|EFQ10328.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|310629187|gb|EFQ12470.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|310632233|gb|EFQ15516.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|311288391|gb|EFQ66947.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|311291302|gb|EFQ69858.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|315027034|gb|EFT38966.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
 gi|315029211|gb|EFT41143.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
 gi|315032370|gb|EFT44302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
 gi|315034370|gb|EFT46302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
 gi|315145185|gb|EFT89201.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
 gi|315148006|gb|EFT92022.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
 gi|315149607|gb|EFT93623.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
 gi|315153133|gb|EFT97149.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
 gi|315155152|gb|EFT99168.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
 gi|315158764|gb|EFU02781.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
 gi|315163093|gb|EFU07110.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
 gi|315165079|gb|EFU09096.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
 gi|315167890|gb|EFU11907.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
 gi|315171750|gb|EFU15767.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
 gi|315174909|gb|EFU18926.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
 gi|315574115|gb|EFU86306.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
 gi|315577243|gb|EFU89434.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
 gi|315581764|gb|EFU93955.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
 gi|327534429|gb|AEA93263.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
          Length = 536

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 129/346 (37%), Gaps = 35/346 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  Q   I   L           I Q   G+GKT    + M   ++A     Q +
Sbjct: 41  GFEEATPIQSETIPLALAGKDV------IGQAQTGTGKTAAFGLPMLNKIDADNRVIQGL 94

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E + +  ++ +I V+ + G      + + L+     + HI++GT   
Sbjct: 95  VIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKD----RPHIVVGTPGR 150

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--R 433
             D I    L L  V        DE    G  + +   ++Q       LL +AT  P  +
Sbjct: 151 LLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAIK 210

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + +  +   +  KI  K      I    +     ++     +++  +  +   +  +  
Sbjct: 211 NIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPELTIVFGRT- 269

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+      E        IHG +S   + SV+ SFKNG   +L+AT V   
Sbjct: 270 -------KRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAAR 322

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 323 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKGGMSVTFVTPN 367


>gi|240850330|ref|YP_002971723.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
           grahamii as4aup]
 gi|240267453|gb|ACS51041.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
           grahamii as4aup]
          Length = 467

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/368 (20%), Positives = 138/368 (37%), Gaps = 47/368 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q   I  +LQ      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 28  TPTPIQSETIPHVLQ------RKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 81

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   +A Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 82  ILEPTREIAAQVEENFDKYGINHRLNVALLIGGVSFELQDRKLER----GADVLIATPGR 137

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRT- 434
             D  +  KL+L+ V     DE  R      +   ++           L  +AT  P   
Sbjct: 138 LLDHCERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLFFSATMAPEIT 197

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVIIP-----INRIDEVIERLKVVLSEGKKAYWI 488
            L    L      ++T+  +    I   ++       ++   + E +    +E + A   
Sbjct: 198 KLTKQFLHSPVSVEVTKASSTATTITQRLVKSGSKSWDKRAVLRELIHNEGAELQNAIIF 257

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         R + E F SL  H   S+  +HG M    + S +  FK+    LL+A+
Sbjct: 258 CNR--------KRDISELFRSLVRH-NFSVGALHGDMDQYSRMSTLADFKDNKLTLLVAS 308

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+   S +   +        +H++ GR GR         +     +K     +
Sbjct: 309 DVAARGLDIPAVSHVFNYDVPTHAEDYIHRI-GRTGRANRSGKAFTIV----TKADQKYI 363

Query: 609 SVLKNTED 616
           + ++   +
Sbjct: 364 NAIEEMSN 371


>gi|238919400|ref|YP_002932915.1| ATP-dependent RNA helicase DbpA [Edwardsiella ictaluri 93-146]
 gi|238868969|gb|ACR68680.1| ATP-independent RNA helicase DbpA [Edwardsiella ictaluri 93-146]
          Length = 457

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 87/455 (19%), Positives = 181/455 (39%), Gaps = 52/455 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + + T  Q + +  IL     +       Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYQTMTPVQAATLPAILAGKDVR------AQAKTGSGKTAAFGLGLLQHIDASRFI 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +    I V  + G +P   +R +L        HII+
Sbjct: 72  TQSLVLCPTRELADQVAAALRRLARYMPNIKVLTLCGGVPFGAQRDSLIHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D ++   L L  + +        R+     A A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLKKETLSLEAL-QTLILDEADRMLDMGFADALDEVISWAPEKRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
              +I+ I+ +   ++   T+ I  +     +E+    +S   K   +   + + +    
Sbjct: 187 WPAEIAAISRR--IQRDPLTIEIDTDGELPAVEQRFYEVSRSGKTGLLQALLSQHQPASC 244

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               +  +     +++L E    S+ ++HG M   D++  +  F NG+ ++L+AT V   
Sbjct: 245 VVFCNTKKDCQAVYDALEESGQ-SVLVLHGDMEQRDRDQTLVRFANGSSRVLVATDVAAR 303

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL-- 611
           G+D+   +++I           +H++ GR  R       I L  P  ++ +     +L  
Sbjct: 304 GLDIKALAMVINYELSWDPEVHVHRI-GRTARAGASGLAISLCAPEEAQRANALEEMLGV 362

Query: 612 ----KNTEDGFLI-----AEEDL--------KQRKEGEILG--IKQSGMPKFLIAQPELH 652
               +   DG  I     A   L        K R  G+ILG    + G+    I + ++H
Sbjct: 363 RLQWQPQPDGVRIAALEAAMATLCIDGGKKAKMR-PGDILGALTGELGLEGADIGKIDIH 421

Query: 653 --DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
              + + + R  A+    Q      ++G+++++ L
Sbjct: 422 PTHAYVAVRRAVARQAWKQL-QQGKIKGKAVKVRL 455


>gi|41408619|ref|NP_961455.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41396977|gb|AAS04838.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 566

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/358 (21%), Positives = 135/358 (37%), Gaps = 35/358 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +PT  Q + I  ++           +     G+GKT    I + + ++A     QA+++A
Sbjct: 35  TPTGIQAATIPALMAG------SDVVGLAQTGTGKTAAFAIPILSKIDAASTATQALVLA 88

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y  +   I V  I G    A +   L+R     AH+++GT     
Sbjct: 89  PTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLKR----GAHVVVGTPGRVI 144

Query: 388 DSIQYYKLILVIVD--------EQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVL 437
           D ++   L L  VD        E    G  + +   L++      V L +AT  P    L
Sbjct: 145 DHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFSATMPPAIRKL 204

Query: 438 TSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           T+    D  +++ K        I    I +    ++    +V+  E  +A  +  +    
Sbjct: 205 TAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKMDALTRVLEVEPFEAMIVFVRT--- 261

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E           S A I+G +    +E  + + K+G   +L+AT V   G+
Sbjct: 262 -----KQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAARGL 316

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           DV   S ++  +  H   + +H++ GR GR     + +L   P             + 
Sbjct: 317 DVERISHVLNYDIPHDTESYVHRI-GRTGRAGRSGTALLFVSPRERHLLKAIEKATRQ 373


>gi|195061826|ref|XP_001996076.1| GH14289 [Drosophila grimshawi]
 gi|193891868|gb|EDV90734.1| GH14289 [Drosophila grimshawi]
          Length = 746

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/378 (18%), Positives = 135/378 (35%), Gaps = 41/378 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           SPT  Q       +           +     GSGKTL  ++     +          G  
Sbjct: 321 SPTPIQAQGWPIAMSG------ANFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGEGPI 374

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  ++ +    + G  P+  + + L+R       I+I T 
Sbjct: 375 ALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE----IVIATP 430

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     S    +   +++DE  R          +K  +         P  +TL+ +
Sbjct: 431 GRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR------PDRQTLMWS 484

Query: 439 SLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    ++ ++ E   G      +    +   + I +V++       E K    +    + 
Sbjct: 485 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEDKLKSLLSDIYDT 544

Query: 495 KKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           +  V+        F      IHG  S  +++ V+  F++G   +L+A
Sbjct: 545 SENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 604

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV     +I  +        +H++ GR GR     +    +    +K + + 
Sbjct: 605 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRI-GRTGRSNTKGTSFAFFTKNNAKQAKSL 663

Query: 608 LSVLKNTEDGFLIAEEDL 625
           + VLK        A E+L
Sbjct: 664 VDVLKEANQEINPALENL 681


>gi|113971464|ref|YP_735257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113886148|gb|ABI40200.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 549

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 137/358 (38%), Gaps = 36/358 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQAQAIPAVLTGKDV------MAAAQTGTGKTAGFTLPLLELLSKGNKAKVGQIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +   +   ++ G +P   + + L         +++ T  
Sbjct: 77  LVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLRH----GVDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 133 RLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKK-------ILAMLPAKRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K    +P++  + P N     +++    + + +K+  +   I+++    
Sbjct: 186 ATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQENWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R          S A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           G+D+     ++  +  +     +H++ GR GR   +   + L     +K       ++
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGALGQAVSLVSSEETKLLRDIERLI 362


>gi|229587022|ref|YP_002845523.1| ATP-dependent RNA helicase RhlE [Rickettsia africae ESF-5]
 gi|228022072|gb|ACP53780.1| ATP-dependent RNA helicase RhlE [Rickettsia africae ESF-5]
          Length = 410

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/339 (18%), Positives = 132/339 (38%), Gaps = 29/339 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQAVIMAPI 330
            PT+ Q+ +I   +           +     GSGKTL  L+ +  + ++    A+I+ P 
Sbjct: 21  EPTEIQKQSIPVAMAG------SDILASSQTGSGKTLAYLLPLIDSFIKNKTTALILVPT 74

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q +  + K T + +I   ++ G  P   +   L++       +IIGT     D +
Sbjct: 75  RELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQLKK----NPKVIIGTPGRIIDHL 130

Query: 391 QYYKL-----ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               L      + ++DE  R                  +        + L+ ++     I
Sbjct: 131 NRGSLKIDRIGITVLDEMDRM------LDMGMKEQLEEINKFLPDKRQVLMFSATMPKHI 184

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----ESNF 500
             +++K     P++  +   N+    I++  + +S+ +K   +  Q+  ++         
Sbjct: 185 IAVSQKYLN-NPVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLGNREGSVIIFVKT 243

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           +   ++   + ++   +   IHG +S   +E V+ SF+    ++++AT V   G+D+   
Sbjct: 244 KRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDIPHT 303

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             +I  +        LH++ GR GR       +    P 
Sbjct: 304 QHVINYDLPMCPEDYLHRI-GRTGRAGATGHALSFISPD 341


>gi|119477017|ref|ZP_01617298.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
 gi|119449824|gb|EAW31061.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
          Length = 431

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 136/371 (36%), Gaps = 41/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  ++           +     G+GKT    + +   +  G        + 
Sbjct: 23  TPSPIQAQAIPAVIGGKDV------MAAAQTGTGKTAGFTLPILELLIPGKLAQANQARV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +  Y +N  +   ++ G +    +   L +       +++ T  
Sbjct: 77  LILTPTRELAAQVGESVATYGKNLPLRSAVVFGGVKINPQMMKLRQ----GVDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L ++++DE  R      +   +K       ++   P  R  +L S
Sbjct: 133 RLLDLYNQRAVKFDHLEVLVLDEADRMLDMGFIHDIKK-------ILAVLPKKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +  +   K     P++  + P N   E ++     + + +K+  +   I++ + S 
Sbjct: 186 ATFSNDIRGLAKGLVNNPVEISVSPANTTVESVQHWIYPVDKNQKSKLLIHLIQDNQWSQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    +     +    + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANKLAKQLDGAGINAAAIHGNKSQGARTKALADFKGGKVQVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL-- 611
           G+D+     ++  +  +     +H++ GR GR       + L      K       ++  
Sbjct: 306 GLDIEQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLVSADEFKQLSDIERLIGE 364

Query: 612 ---KNTEDGFL 619
              + + DGF 
Sbjct: 365 LLQRQSVDGFK 375


>gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 502

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 140/373 (37%), Gaps = 45/373 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q  AI  +L+ M        +     G+GKT    + +   + A            
Sbjct: 46  PTPIQAEAIPVVLKGMDV------MGAAQTGTGKTAGFSLPIIQLLMAHANSSASPARHP 99

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q    +K Y+++T +   ++ G M    +  AL     G   I+I 
Sbjct: 100 VRALILTPTRELADQVAANVKAYSRHTPLRSLVVFGGMDMTPQTAALR----GGVEIVIA 155

Query: 382 THALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPI 431
           T     D +Q   + L       +DE  R      L   Q+           L+ +AT  
Sbjct: 156 TPGRLLDHVQQKTINLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQRQNLMFSATFS 215

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P    L  T L D    ++    A  + +  +I  +    +      ++   G K   + 
Sbjct: 216 PEIKKLAATFLKDPVTIEVARSNATAENVTQIIYKVEEEAKRDAVSFIIRERGLKQVIVF 275

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   SN +    R     E      + IHG  S  ++   ++ FKNGT ++L+AT 
Sbjct: 276 --------SNTKIGASRLARQLESEGVKASAIHGDKSQSERMQALEQFKNGTIEVLVATD 327

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +   +I  +  +     +H++ GR GR       I L+    ++       
Sbjct: 328 VAARGLDIAELPCVINFDLPYNAEDYVHRI-GRTGRAGASGDAISLFSDKDARLLVDIEK 386

Query: 610 VLKNTEDGFLIAE 622
           ++K+    F+ AE
Sbjct: 387 MIKHK---FVPAE 396


>gi|223462261|gb|AAI50863.1| Ddx3x protein [Mus musculus]
          Length = 661

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 145/379 (38%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + A G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  ID+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDK-RSF 430

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 431 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 544 FFNERNINITKDLLDLLVE 562


>gi|322796814|gb|EFZ19232.1| hypothetical protein SINV_01003 [Solenopsis invicta]
          Length = 1201

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/364 (21%), Positives = 135/364 (37%), Gaps = 39/364 (10%)

Query: 272  SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
             PT  Q       L        M+ I Q   GSGKTL  ++     +          G  
Sbjct: 727  EPTAIQAQGWPIAL----SGRDMVGIAQ--TGSGKTLAYILPAIVHINHQPRLSRNDGPI 780

Query: 324  AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            A+I+AP   LAQQ  +    +  ++Q+    I G  P+  + + LER       I I T 
Sbjct: 781  ALILAPTRELAQQIQQVASDFGMSSQVRNTCIFGGAPKGPQARDLER----GVEICIATP 836

Query: 384  ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
                D ++           L+L   D     G + +++    Q       L+ +AT    
Sbjct: 837  GRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKE 896

Query: 433  -RTLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
             R L    L D     I   +  A    ++ V +      E      +     +      
Sbjct: 897  VRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKESKLMKLLEEISNEPENKTI 956

Query: 490  PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
              +E K     R V +   +++ +   +I I HG  S  +++ V++ F+N    +L+AT 
Sbjct: 957  IFVETK-----RKVDDITRAINRYGWQAIGI-HGDKSQQERDYVLNQFRNSRSAILVATD 1010

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
            V   G+DV D   +I  +        +H++ GR GR +   +    + P  +  +   + 
Sbjct: 1011 VAARGLDVEDVKFVINLDYPSNSEDYVHRI-GRTGRSQRTGTAYAFFTPGNAHKAGDLIQ 1069

Query: 610  VLKN 613
            VL+ 
Sbjct: 1070 VLEE 1073



 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 137/385 (35%), Gaps = 49/385 (12%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           N    + + I R     PT  Q       L        ++ I Q   GSGKTL  ++   
Sbjct: 118 NFPPYVMENIHREGYLRPTPIQAQGWPIAL----SGRDLVAIAQ--TGSGKTLGYILPAI 171

Query: 316 AAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             +          G   +I+AP   LAQQ  E    + +   +    I G  P+  +   
Sbjct: 172 VHIIHQPRISSGDGPIVLILAPTRELAQQIQEVANSFGEMAAVRNTCIFGGAPKGPQAHD 231

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQK 417
           LE+       I I T     D ++           L+L   D     G   Q R  + Q 
Sbjct: 232 LEK----GIEICIATPGRLIDFLEKGTTNLYRCTYLVLDEADRMLDMGFEPQIRKIIEQI 287

Query: 418 ATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                VL+ +AT     R L    L D     I           T II +          
Sbjct: 288 RPDRQVLMWSATWPKEVRALAEDFLTDYIHLNIGSLTLSANHNITQIIDV---------- 337

Query: 476 KVVLSEGKKAYWICPQIEEKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
                +  K Y +  +I  +KE+         R V +   ++      +++I HG  +  
Sbjct: 338 CQEYEKDLKLYRLLQEIGTEKENKTIIFVETKRKVDDITKNIRREGWQAVSI-HGDKNQQ 396

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +++ V+  F+NG   +L+AT V   G+DV D   +I  +        +H++ GR GR  +
Sbjct: 397 ERDHVLQEFRNGKAPILVATDVAARGLDVDDVKYVINFDFPSSSEDYIHRI-GRTGRKRQ 455

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKN 613
             +    +     K++   + VL+ 
Sbjct: 456 TGTAYAFFTTHNMKHAGDLIEVLRE 480


>gi|197284022|ref|YP_002149894.1| ATP-dependent RNA helicase DbpA [Proteus mirabilis HI4320]
 gi|194681509|emb|CAR40383.1| ATP-independent RNA helicase [Proteus mirabilis HI4320]
          Length = 457

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 88/456 (19%), Positives = 179/456 (39%), Gaps = 52/456 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + + + T  QE+++  IL     +       Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQEASLPAILAGKDVR------AQAKTGSGKTAAFGLGLLQRIDAKQFN 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +    I +  + G +P + +R +L       AHII+
Sbjct: 72  TQSLVLCPTRELADQVANELRRLARFLPNIKILTLCGGVPFSIQRDSLIHA----AHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +    + L  V         + L +        ++   +T   +TL+ ++ 
Sbjct: 128 ATPGRLLDHLNKQTVTLADVKTLVLDEADRMLDMGFFDDISDIISQMSTQ-RQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
              +I+KI+ K   + P+   I   + +   +E+    +S   K   +   +   + ++ 
Sbjct: 187 WPDEIAKISRK-IQQDPVTIEINSPDELP-AVEQQFYEISRYGKLGLLQKLLSHHQPNSC 244

Query: 501 -------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R   + + +L E    S+  +HG M   +++  +  F NG+C++L+AT V   
Sbjct: 245 VVFCNTKRDCQDVYEALTES-NQSVLALHGDMEQKERDQTLIRFANGSCRVLVATDVAAR 303

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL-- 611
           G+D+    ++I     H     +H++ GR  R  E    I    P     +     +L  
Sbjct: 304 GLDIKALEMVINYELSHDPEVHIHRI-GRTARAGESGLAISFCAPEEIPRANALEEMLNI 362

Query: 612 ----KNTEDGFLI-----AEEDL--------KQRKEGEILGIKQS--GMPKFLIAQPELH 652
               ++   G  I         L        K R  G+ILG      G     I +  +H
Sbjct: 363 KLDWQSAPSGLSITPLVATMATLCIDGGKKAKMR-PGDILGALTGDLGFSGEDIGKINIH 421

Query: 653 --DSLLEIARKDAKHILTQDPDLTSVRGQSIRILLY 686
              + + + +  AK +         ++G+S+++ L+
Sbjct: 422 PTHAYVAVKQSIAKQVWKSL-QQGKIKGKSVKVRLF 456


>gi|148229654|ref|NP_001084230.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus laevis]
 gi|8163810|gb|AAF73861.1|AF218580_1 p68 RNA helicase [Xenopus laevis]
          Length = 608

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 89/440 (20%), Positives = 156/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E            ++ K+     IN    I      + P 
Sbjct: 50  PKFEKNFYQEHPDVVRRTPQECDQY--------RRSKEITVRGINCPKPILNFNEASFPA 101

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +        +     GSGKTL  L+     + 
Sbjct: 102 NVMEAIKRQNFTEPTPIQGQGWPVALSGLD------MVGVAMTGSGKTLSYLLPGIVHIN 155

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 156 HQPFLQRGDGPILLVLAPTRELAQQVQQVAAEYGRACRLRSTCIYGGAPKGPQIRDLER- 214

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 215 ---GVEICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 271

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRKPIKTVII--PINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A    ++ V +     + D+++  +
Sbjct: 272 QTLMWSATWPKEVRQLAEDFLRDYVHINIGALELSANHNILQIVDVCNDGEKDDKLVRLM 331

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   +    L      ++ I HG  S  +++ V++
Sbjct: 332 EEIMSEKENKTIVFVETK-------RRCDDLTRRLRRDGWPAMGI-HGDKSQQERDWVLN 383

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 384 EFKHGKSPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSSKTGTAYTF 442

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 443 FTPGNIKQVNDLISVLREAN 462


>gi|148977343|ref|ZP_01813957.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
 gi|145963456|gb|EDK28720.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
          Length = 646

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 145/365 (39%), Gaps = 27/365 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   +   +   QA+IMA
Sbjct: 28  SPTPIQAAAIPLLLEGRD------ALGKAQTGTGKTAAFSLPLLNKINLNQHKPQAIIMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   ++   + V  I G      + +AL R     AHI++GT    +
Sbjct: 82  PTRELAIQVAAEIKNLGRDIKGLKVIEIYGGASIVDQMRALSR----GAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDI 445
           D +   +L    +DE H F + +  ++ +      V  +L  A    + ++ ++     +
Sbjct: 138 DLLTRDRL---HLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPMV 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
             I ++   R P K  +   N   + + +   V+   +K   +   +E ++         
Sbjct: 195 KTIVDRYL-RNPAKVDVAGTNHTVDKVAQNFWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V K+T +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSTMEEIQ 372

Query: 620 IAEED 624
           +   D
Sbjct: 373 LPLRD 377


>gi|229589245|ref|YP_002871364.1| cold-shock dead-box protein A [Pseudomonas fluorescens SBW25]
 gi|229361111|emb|CAY47974.1| cold-shock dead-box protein A [Pseudomonas fluorescens SBW25]
          Length = 557

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 147/392 (37%), Gaps = 44/392 (11%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N+   I   ++      P+  Q+ +I  I+           I Q   G+GKT    
Sbjct: 8   FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQD------MIGQAQTGTGKTAAFA 61

Query: 312 IAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKA 367
           + +   ++      QA+I+AP   LA Q     + Y  Q   + V  + G  P   + KA
Sbjct: 62  LPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKA 121

Query: 368 LERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKAT 419
           +       A I++ T     D ++           L+L   DE  + G    L++  KA 
Sbjct: 122 IRN----GAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKAL 177

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
                     P  +T++ ++     I  I E+   R P    I    +    IE+  +++
Sbjct: 178 P---------PTRQTVLFSATLPQSIRAIAERHL-RDPQHVKIQTKTQTVTAIEQAHLLV 227

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESV 533
              +K   +   +E +        V          S  E      A ++G ++   +E V
Sbjct: 228 HADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERV 287

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +DS K+G   +++AT V   G+DV   + +   +  +   + +H++ GR GR       +
Sbjct: 288 IDSLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGREGRAL 346

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           LL  P         L V++    G  +AE  L
Sbjct: 347 LLVTPRE----RRMLQVIERVT-GQKVAEVRL 373


>gi|168183134|ref|ZP_02617798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|182673701|gb|EDT85662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
          Length = 524

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/367 (20%), Positives = 149/367 (40%), Gaps = 38/367 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----E 319
           ++++ F  P+  QE +I  +L+          I Q   G+GKTL     + +A+     +
Sbjct: 19  IQHMGFETPSAIQEKSIPVVLEG------ADVIAQAQTGTGKTLAFGAPVISALCDKEKK 72

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G +A+++ P   LA Q  + +K+ ++ ++  V  + G      + K ++        I+
Sbjct: 73  KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS----GVDIV 128

Query: 380 IGTHALFQDSIQYYKLILVIVD--------EQHRFGVQQRLKLTQKAT--APHVLLMTAT 429
           +GT     D I    L L  +D        E    G  + ++   ++T      +L +AT
Sbjct: 129 VGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTMLFSAT 188

Query: 430 ---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
              PI +  +     D++   I +K      I      +   D++    +++ SE  ++ 
Sbjct: 189 MPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCRIIDSEEPESA 248

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            I  +         +  V+      +    ++  +HG MS   + + +  FK  T   L+
Sbjct: 249 IIFCRT--------KRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   GIDV + S +I  +      + +H++ GR GR ++  +   L  P    +   
Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRI-GRTGRADKEGTAYSLVTPREVSSIRQ 359

Query: 607 RLSVLKN 613
              + K+
Sbjct: 360 IERITKS 366


>gi|148543481|ref|YP_001270851.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           reuteri DSM 20016]
 gi|184152890|ref|YP_001841231.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
 gi|227363631|ref|ZP_03847746.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           MM2-3]
 gi|227544701|ref|ZP_03974750.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           CF48-3A]
 gi|300909057|ref|ZP_07126520.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112]
 gi|325681826|ref|ZP_08161345.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A]
 gi|148530515|gb|ABQ82514.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri DSM
           20016]
 gi|183224234|dbj|BAG24751.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
 gi|227071342|gb|EEI09650.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           MM2-3]
 gi|227185302|gb|EEI65373.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           CF48-3A]
 gi|300894464|gb|EFK87822.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112]
 gi|324978917|gb|EGC15865.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A]
          Length = 498

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 130/344 (37%), Gaps = 40/344 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  QE  I  +L+          I Q   G+GKT    + +   V+      QA+I++P 
Sbjct: 25  TPIQEQTIPMVLEGKDV------IGQAQTGTGKTAAFGLPIIENVDTENLNIQAIIISPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + +  ++  + V+++ G      + K+L++       I++GT    +D I
Sbjct: 79  RELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQ----HPQILVGTPGRLRDHI 134

Query: 391 QYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--LVLT 438
             +         L+L   DE    G  + +   + +       LL +AT  P    + + 
Sbjct: 135 NRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLFSATMPPEIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  +I  K      +    I     ++     +++  +      +  + +     
Sbjct: 195 FMSDPETVRIKAKELTTDLVDQYYIRARDYEKFDIMTRLIDVQDPDLTIVFGRTKR---- 250

Query: 499 NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                  R + L +   +     A IHG ++   +  +M  FKN    +L+AT V   G+
Sbjct: 251 -------RVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGL 303

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           D+   + +   +      + +H++ GR GR       +    P 
Sbjct: 304 DISGVTHVYNYDIPSDPDSYVHRI-GRTGRAGHHGVSLTFVTPN 346


>gi|115524965|ref|YP_781876.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115518912|gb|ABJ06896.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 517

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/356 (19%), Positives = 127/356 (35%), Gaps = 26/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q+ AI  ++       R   +     G+GKT   ++ M   +E G       + +
Sbjct: 23  TPTPIQDQAIPHVMA------RRDVLGIAQTGTGKTAAFVLPMLTLLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDIKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D  +   L+L  V E        R+           +        +TL  T+    +I
Sbjct: 133 LLDHTERGGLLLTGV-ELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPTEI 191

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-------- 497
            +ITE          V  P +    V +       E  +      Q+  +          
Sbjct: 192 RRITEAFLHNPVKIEVSKPASTAVTVTQSQVAAGREPHQKRETLRQLLREASDLQNAIIF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N +  V            S+  +HG M    + + +++F+ G   LL+A+ V   G+D+
Sbjct: 252 CNRKREVALLAKSLLKHGFSVGALHGDMDQSARTAALEAFRKGELPLLVASDVAARGLDI 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            + S +   +  H     +H++ GR GR     + + L  PP  K+      ++  
Sbjct: 312 PEVSHVFNFDVPHHPDDYVHRI-GRTGRAGRAGTAVTLVAPPDGKSVAAIEKLIGQ 366


>gi|328470214|gb|EGF41125.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus 10329]
          Length = 522

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/373 (18%), Positives = 139/373 (37%), Gaps = 41/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  IL+          +     G+GKT    + +   +  G +       A
Sbjct: 23  TPSPIQAKAIPAILEGKDV------MAAAQTGTGKTAGFTLPILERLSNGPRVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +  Y ++  +   ++ G +    +   L +     A +++ T  
Sbjct: 77  LILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRLRK----GADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRK-------ILALLPKQRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +E+        KKA  +   I++     
Sbjct: 186 ATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R            A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++           +H++ GR GR  EI   I L     +   +    +++ 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRI-GRTGRAGEIGKAISLVCALEASELFAIERLIQE 364

Query: 614 TEDGFLIAEEDLK 626
                ++  ++L+
Sbjct: 365 -----VLPRKELE 372


>gi|296446324|ref|ZP_06888270.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
 gi|296256225|gb|EFH03306.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
          Length = 419

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 129/360 (35%), Gaps = 27/360 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  QE AI   LQ          +     G+GKT   ++ M   +E G       + +
Sbjct: 23  QPTPIQEQAIPPALQGRD------ILGIAQTGTGKTAAFVLPMLCRLEQGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q      KY  N ++ V ++ G M    +   + R     A ++I T   
Sbjct: 77  ILEPTRELAAQVEASFAKYGANHKLNVALLIGGMAFGDQEAKIMR----GADVLIATPGR 132

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D     KL+L  + E        R+           +        +TL  ++    +I
Sbjct: 133 LLDFFDRGKLLLTNI-EILVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFSATMPPEI 191

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-------- 497
           +++TE      P++  +   +     I +  V      +      ++    E        
Sbjct: 192 TRLTEAFL-HNPVRIEVARASSTAATIRQALVATHGHAEKRETLRRLLRGAENFKNAIIF 250

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N +  V   +   +    S   +HG M    + + +D+FKNG   LL+ + V   G+D+
Sbjct: 251 CNRKRDVAILHRSLDKHGFSAGALHGDMDQPARMASLDAFKNGDVALLVCSDVAARGLDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            D S +   +        +H++ GR GR     + + L      K      +++ N  D 
Sbjct: 311 PDVSHVFNFDVPTHSEDYVHRI-GRTGRAGRSGTAVTLVTGEDRKYLDQIETLIGNKIDW 369


>gi|71895253|ref|NP_001025971.1| ATP-dependent RNA helicase DDX3X [Gallus gallus]
 gi|60098425|emb|CAH65043.1| hypothetical protein RCJMB04_2a4 [Gallus gallus]
          Length = 651

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + A G          
Sbjct: 195 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKE 248

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K+   +++   ++ G      + + LER 
Sbjct: 249 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLER- 307

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 308 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 364

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  +D+    
Sbjct: 365 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDK-RSF 422

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 423 LLDLLNATGKDSLTLVFVETKK------GADALEDFLYHEGYACTSIHGDRSQRDREEAL 476

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 477 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 535

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 536 FFNERNINITKDLLDLLVE 554


>gi|269138721|ref|YP_003295422.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|267984382|gb|ACY84211.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|304558724|gb|ADM41388.1| ATP-dependent RNA helicase DbpA [Edwardsiella tarda FL6-60]
          Length = 457

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 90/462 (19%), Positives = 174/462 (37%), Gaps = 66/462 (14%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + + T  Q + +  IL     +       Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYQTMTPVQAATLPAILAGKDVR------AQAKTGSGKTAAFGLGLLQHIDANRFI 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    ++K  +    I V  + G +P   +R +L        H+I+
Sbjct: 72  TQSLVLCPTRELADQVATALRKLARYMPNIKVLTLCGGVPFGAQRDSLIHA----PHVIV 127

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            T     D ++           LIL   D     G    L           ++  A    
Sbjct: 128 ATPGRLLDHLKKETVSLEALQTLILDEADRMLDMGFADAL---------DEVISWAPEKR 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++    +I+ I+ +   R P+   I     +   +E+    +S G K   +   +
Sbjct: 179 QTLLFSATWPAEIAAISRR-IQRDPLTIEIDTHGELP-AVEQRFYEVSRGGKVGLLQTLL 236

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            + +        N +   +      E    S+  +HG M   D++  +  F NG+ ++L+
Sbjct: 237 SQYQPASCVVFCNTKKDCQAVYDALEGSEQSVLALHGDMEQRDRDQTLVRFANGSSRVLV 296

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+    ++I           +H++ GR  R  E    I L  P  ++ +  
Sbjct: 297 ATDVAARGLDIKALEMVINYELSWDPEVHVHRI-GRTARAGESGLAISLCAPEEAQRANA 355

Query: 607 RLSVL------KNTEDGFLI-----AEEDL--------KQRKEGEILG--IKQSGMPKFL 645
              +L      +    G  I     A   L        K R  G+ILG    + G+    
Sbjct: 356 LEEMLGARLQWQPLPSGVRIVALEAAMATLCIDGGKKTKMR-PGDILGALTGELGLDGAD 414

Query: 646 IAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           I + ++H   + + + R  A+    Q      ++G+++++ L
Sbjct: 415 IGKIDIHPTHAYVAVRRAVARQAWKQL-QQGKIKGKAVKVRL 455


>gi|321456211|gb|EFX67324.1| hypothetical protein DAPPUDRAFT_302036 [Daphnia pulex]
          Length = 797

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 162/433 (37%), Gaps = 45/433 (10%)

Query: 210 HNP-RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG--KIAQKIL 266
           + P RK    E    AR      +    ++  + ++ +            G  K   +IL
Sbjct: 88  YFPFRKNFYVEVPDIARMTQEEVDEYRQELEGIKVKGKGCPRPIKAWAQCGVSKKEMEIL 147

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
           + + +  PT  Q   I  I+           I     GSGKTL  L+ M   +       
Sbjct: 148 KKLAYEKPTPIQTQTIPAIMSGRD------IIGIAKTGSGKTLAFLLPMFRHILDQPALE 201

Query: 321 ---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
              G  A+IM+P   L  Q  +  K++T++  + V  + G    + +   L+R     A 
Sbjct: 202 ETDGPIAIIMSPTRELCLQIGKECKRFTKSLNLRVVTVYGGTGISEQIAELKR----GAE 257

Query: 378 IIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           II+ T     D +           ++  +++DE  R                  ++    
Sbjct: 258 IIVCTPGRMIDMLAANNGRVTNLRRVTYIVLDEADRMFDMGFEPQVM------RIIDNTR 311

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P  +T++ ++     +  +  +    KP++  +   + +   +E+  +V+ + +K   + 
Sbjct: 312 PDRQTVMFSATFPRQMEALARRILN-KPVEITVGGRSVVCADVEQHVLVMEDEQKFLKLL 370

Query: 490 PQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTC 542
             +   +E      F    E  + L +    +      +HG +   D++S +  FKNG  
Sbjct: 371 ELLGVYQEQGSVLVFVEKQESADDLLKDLMKAGYDCISLHGGIDQYDRDSAVVDFKNGKI 430

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           KL+IAT+V   G+DV    +++  +  +     +H+  GR GR            P   +
Sbjct: 431 KLMIATSVAARGLDVKHLILVVNYDCPNHHEDYIHR-CGRTGRAGNKGFAYTFITPDQQR 489

Query: 603 NSYTRLSVLKNTE 615
            +   +  ++ +E
Sbjct: 490 AAGDIIKAMEQSE 502


>gi|289619969|emb|CBI53413.1| unnamed protein product [Sordaria macrospora]
          Length = 602

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 140/371 (37%), Gaps = 42/371 (11%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------ 320
           +  P +PT  Q       L           +   + GSGKTL   +     + A      
Sbjct: 189 QGFP-APTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAP 241

Query: 321 --GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G   +I+AP   LA Q  + I K+ ++++I    + G +P+  + + L R       +
Sbjct: 242 GDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDLSR----GVEV 297

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTA 428
            I T     D ++  K        L+L   D     G   Q R  + Q       L+ +A
Sbjct: 298 CIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSA 357

Query: 429 TPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEG 482
           T     R L    L +     I           T I+ +     + D +I+ L+ ++   
Sbjct: 358 TWPKEVRNLASDFLTNFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIKHLEKIMEGR 417

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +    I      K     R   +    L +    +++I HG     +++ V+D FK G  
Sbjct: 418 ENTNKILIFTGTK-----RVADDITRFLRQDGWPALSI-HGDKQQNERDWVLDQFKTGKS 471

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +++AT V   GIDV + + ++  +  +     +H++ GR GR     + I  +    SK
Sbjct: 472 PIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRI-GRTGRAGAKGTAITFFTTDNSK 530

Query: 603 NSYTRLSVLKN 613
            +   + VL+ 
Sbjct: 531 QARELVGVLQE 541


>gi|110737546|dbj|BAF00715.1| DRH1 DEAD box protein - like [Arabidopsis thaliana]
          Length = 450

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 146/371 (39%), Gaps = 38/371 (10%)

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQN 347
             +     GSGKTL  LI     ++        G   ++++P   LA Q      K+ ++
Sbjct: 5   DIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKS 64

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVI 399
           ++I    + G  P+  + K +ER       I++ T     D ++  +        L+L  
Sbjct: 65  SKISCACLYGGAPKGPQLKEIER----GVDIVVATPGRLNDILEMKRISLHQVSYLVLDE 120

Query: 400 VDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTL-----VLTSLGDIDISKITEKP 452
            D     G + +++    +  T    L+ TAT           +L +   ++I  + E  
Sbjct: 121 ADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELV 180

Query: 453 AGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
           A +   +T+ ++        +E++      G K    C        S  R   +   +L 
Sbjct: 181 ANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFC--------STKRMCDQLARNLT 232

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
             F +  A IHG  S  +++ V++ F++G   +L+AT V   G+DV D  +++  +  + 
Sbjct: 233 RTFGA--AAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNG 290

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
               +H++ GR GR          +    +K++   + +L+           ++  R  G
Sbjct: 291 VEDYVHRI-GRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMATRGGG 349

Query: 632 EILGIKQSGMP 642
            +   ++ G P
Sbjct: 350 GMNKFRRWGTP 360


>gi|74006738|ref|XP_861475.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 9 [Canis familiaris]
          Length = 663

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 142/363 (39%), Gaps = 57/363 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 430

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 431 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +  C++
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGKCLV 543

Query: 595 LYH 597
            + 
Sbjct: 544 TFD 546


>gi|193785182|dbj|BAG54335.1| unnamed protein product [Homo sapiens]
          Length = 674

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 133/383 (34%), Gaps = 45/383 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q   +   L        M+ I     GSGKT   +  M   +          G  
Sbjct: 11  QPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAAFIWPMLIHIMDQKELEPGDGPI 64

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AVI+ P   L QQ +   K++ +   +    + G      + KAL+      A I++ T 
Sbjct: 65  AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE----GAEIVVCTP 120

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D ++           L+    D     G + +++                P  +TL
Sbjct: 121 GRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVR---------PDRQTL 171

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK-KAYWICPQIEE 494
           + ++     I K+  +     PI+ V   I   +E + ++  +L  G  K  W+  ++ E
Sbjct: 172 LFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVE 230

Query: 495 KKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        ++  E   +  +    ++ ++HG M   ++  V+  FK     +L+A
Sbjct: 231 FTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVA 290

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+     +I  +         H++ GR GR  E      L  P  S  +   
Sbjct: 291 TDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGRAGEKGVAYTLLTPKDSNFAGDL 349

Query: 608 LSVLKNTEDGFLIAEEDLKQRKE 630
           +  L+           DL  +  
Sbjct: 350 VRNLEGANQHVSKELLDLAMQNA 372


>gi|114669836|ref|XP_001147439.1| PREDICTED: DEAD box polypeptide 42 protein isoform 2 [Pan
           troglodytes]
 gi|114669838|ref|XP_001147515.1| PREDICTED: DEAD box polypeptide 42 protein isoform 3 [Pan
           troglodytes]
          Length = 674

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 133/383 (34%), Gaps = 45/383 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q   +   L        M+ I     GSGKT   +  M   +          G  
Sbjct: 11  QPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAAFIWPMLIHIMDQKELEPGDGPI 64

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AVI+ P   L QQ +   K++ +   +    + G      + KAL+      A I++ T 
Sbjct: 65  AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE----GAEIVVCTP 120

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D ++           L+    D     G + +++                P  +TL
Sbjct: 121 GRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVR---------PDRQTL 171

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK-KAYWICPQIEE 494
           + ++     I K+  +     PI+ V   I   +E + ++  +L  G  K  W+  ++ E
Sbjct: 172 LFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVE 230

Query: 495 KKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        ++  E   +  +    ++ ++HG M   ++  V+  FK     +L+A
Sbjct: 231 FTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVA 290

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+     +I  +         H++ GR GR  E      L  P  S  +   
Sbjct: 291 TDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGRAGEKGVAYTLLTPKDSNFAGDL 349

Query: 608 LSVLKNTEDGFLIAEEDLKQRKE 630
           +  L+           DL  +  
Sbjct: 350 VRNLEGANQHVSKELLDLAMQNA 372


>gi|320166262|gb|EFW43161.1| ATP dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 633

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/379 (18%), Positives = 143/379 (37%), Gaps = 55/379 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  I       +R   +     GSGKT   L+ + + +             
Sbjct: 193 KPTPVQKHAIPII------HSRRDLMACAQTGSGKTAAFLLPILSNLWKQGPAVPPPRPS 246

Query: 319 --------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                   +   +A+++AP   LA Q YE  +K++  + I   ++ G      + + +ER
Sbjct: 247 GPGGYRRQKTHIEALVLAPTRELAVQIYEEARKFSYRSGIRACVVYGGTDIGQQLRDIER 306

Query: 371 IAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATA-- 420
                  +++ T     D ++  K        ++L   D     G + +++   +     
Sbjct: 307 ----GCQLLVATPGRLMDLLERGKISLDNCRYVVLDEADRMLDMGFEPQIREIVEKNDLP 362

Query: 421 ----PHVLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                 +L+ +AT       L    L D     +    +  + I   +I ++  D+    
Sbjct: 363 AMGERQMLMFSATFPKEIQALARDFLEDYLFLAVGRVGSTSENITQKLIWVDEHDKRSML 422

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L ++ + G +   +C  +E K+ ++             H     A IHG  S  ++E  +
Sbjct: 423 LDLLSAAGPECLTLC-FVETKRAADS------LEDFLYHEGFPAASIHGDRSQREREDAL 475

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 476 RTFRSGHTPILVATAVAARGLDIPNVKHVINYDLPTEIDEYVHRI-GRTGRVGNLGLSTS 534

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L +
Sbjct: 535 FFNEKNRSLARELLDLLTD 553


>gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 589

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 148/380 (38%), Gaps = 45/380 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N+   I Q + +     P+  Q  +I  +L+          + Q   G+GKT    + M
Sbjct: 12  LNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHD------LLGQAQTGTGKTAAFALPM 65

Query: 315 AAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALER 370
            A ++      Q +++AP   LA Q  E  + Y   +Q I V  + G     ++ + L+R
Sbjct: 66  LANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKR 125

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATA 420
                  +++GT     D I+   L        +L   DE  R G    ++L        
Sbjct: 126 ----GVQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPEE 181

Query: 421 PHVLLMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKTV---IIPINRIDEVIERL 475
               L +AT P P + +    L D    KI  K +    I+     I P ++++ +   +
Sbjct: 182 RQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRIM 241

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +V + +G   +               + VE  + L       +  ++G +    +E  ++
Sbjct: 242 EVEVFDGMIIFV----------RTKTATVELADKLSARGYD-VEPLNGDIPQAARERTVE 290

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             K G   +L+AT V+  G+DV   S +I  +  +   + +H++ GR GR       IL 
Sbjct: 291 KLKQGKIDILVATDVVARGLDVERVSHVINYDIPYDSESYVHRI-GRTGRAGRQGDAILF 349

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
               +S      L  ++ T 
Sbjct: 350 ----ISHREKRLLFSIEKTT 365


>gi|91224087|ref|ZP_01259350.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
 gi|91190998|gb|EAS77264.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
          Length = 517

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 139/373 (37%), Gaps = 41/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  IL+          +     G+GKT    + +   +  G +       A
Sbjct: 23  TPSPIQAKAIPAILEGKDV------MAAAQTGTGKTAGFTLPILERLSNGPRVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +  Y ++  +   ++ G +    +   L +     A +++ T  
Sbjct: 77  LILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRLRK----GADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRK-------ILALLPKQRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +E+        KKA  +   I++     
Sbjct: 186 ATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R            A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++           +H++ GR GR  E+   I L     +   +    +++ 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRI-GRTGRAGEVGKAISLVCALEASELFAIERLIQE 364

Query: 614 TEDGFLIAEEDLK 626
                ++  ++L+
Sbjct: 365 -----VLPRKELE 372


>gi|58581173|ref|YP_200189.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623095|ref|YP_450467.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58425767|gb|AAW74804.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367035|dbj|BAE68193.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 634

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 159/450 (35%), Gaps = 45/450 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q + I  +L           + Q   G+GKT    + + +  +      QA+++A
Sbjct: 31  SPSPIQAATIPALLAGRDV------LGQAQTGTGKTAAFALPVLSNADLNQVKPQALVLA 84

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY +      V  + G  P A +  AL+R      H+++GT     
Sbjct: 85  PTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR----GVHVVVGTPGRVI 140

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP--RTL 435
           D +        Q   L+L   DE  R G    ++  L +      V L +AT  P  R +
Sbjct: 141 DHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPPAIRRI 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E      I  +    
Sbjct: 201 AQTYLKDPAEVIIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFART--- 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E      +    + A I+G M    +E  +   K+G   +L+AT V   G+
Sbjct: 258 -----KAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGL 312

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL           +     +   
Sbjct: 313 DVERISHVLNYDIPYDTESYVHRI-GRTGRAGRTGDAILFVTLREKGMLRSIERATRQPI 371

Query: 616 DGFLIAEED-----LKQRKEGEILGIKQSGMPKFLIAQPELHDS-----LLEIARKDAKH 665
           +   +   D        R    I      G         + +++      ++IA   AK 
Sbjct: 372 EEMQLPSVDAVNDTRVARFMTRITETLAGGQIDMYRDLLQRYEAENNVPAIDIAAAMAKL 431

Query: 666 ILTQDPDLTSVRGQSIRILLYLYQYNEAFQ 695
           +    P L +   +  R      + ++   
Sbjct: 432 LQGDAPFLLTPPVRGAREDAAPRERHQRAD 461


>gi|49474271|ref|YP_032313.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse]
 gi|49239775|emb|CAF26165.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse]
          Length = 467

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/368 (21%), Positives = 138/368 (37%), Gaps = 47/368 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q   I  +LQ      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 28  APTPIQSGTIPYVLQ------RKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 81

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +   H+ + LER     A ++I T   
Sbjct: 82  ILEPTRELAAQVEENFDKYGINHRLNVALLIGGVSFEHQDRKLER----GADVLIATPGR 137

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRT- 434
             D  +  KL+L+ V     DE  R      +   ++           L  +AT  P   
Sbjct: 138 LLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLFFSATMAPEIT 197

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVIIP-----INRIDEVIERLKVVLSEGKKAYWI 488
            L    L      ++T+  +    I   ++       ++   + E +     E K A   
Sbjct: 198 KLTKQFLHFPVTVEVTKASSTATTITQQLVKSGNKSWDKRAVLRELIHNEGDELKNAIIF 257

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         R + E F SL  H   S+  +HG M    + S +  FK+    LL+A+
Sbjct: 258 CNR--------KRDISELFRSLVRH-NFSVGALHGDMDQYSRMSTLADFKDNKLTLLVAS 308

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+   S +   +        +H++ GR GR         +     +K     +
Sbjct: 309 DVAARGLDIPAVSHVFNYDVPTHAEDYIHRI-GRTGRANRSGKAFTIV----TKADQKYI 363

Query: 609 SVLKNTED 616
           S ++   +
Sbjct: 364 SAIEEMSN 371


>gi|324502742|gb|ADY41204.1| ATP-dependent RNA helicase DDX46 [Ascaris suum]
          Length = 973

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 165/450 (36%), Gaps = 46/450 (10%)

Query: 175 IVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL 234
           + + +    +  E     L+ +       +   + + P +   +  T+   +    +   
Sbjct: 237 MEQVVDDFDI--EKAASSLIARGRQLPQTDHSKVYYRPFRKDFYVETAELAKMTKKEVDQ 294

Query: 235 AGQIALLLMRKQFKKEIGIPINVEGKIAQKI--LRNIPFS-PTKSQESAIKDILQDMSQK 291
             +   + +R +   +        G   + +  L+ + ++ PT  Q  AI  I+      
Sbjct: 295 YREELDIRVRGKNCPKPVRSWAQCGVEWKILNTLKKLEYTKPTAIQAQAIPAIMSGRDV- 353

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKK 343
                I     GSGKTL  L+ M   +          G  AVIM+P   LA Q ++   K
Sbjct: 354 -----IGIAKTGSGKTLAFLLPMFRHIMDQPELEELDGPIAVIMSPTRELAMQTWKEANK 408

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKL 395
           + +   I V  + G +  + +   L+R     A +I+ T     D +           ++
Sbjct: 409 FAKPLNIRVACVYGGVGISDQIGDLKR----GAEVIVCTVGRLTDMLAANKGKVTNLRRV 464

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
             +++DE  R           K            P  +T++ ++     +  +  K    
Sbjct: 465 TYLVLDEADRMFDMGFEPQVMKIVNNIR------PDRQTVLFSATFPRQMEALARKILD- 517

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLH 511
           KP++ ++   + + + + +  V+L E +K   +   +    E      F    E+ + L 
Sbjct: 518 KPVEILVGGKSVVCDDVSQNVVILEEHQKMLKLLELLGVYWEHGNVLVFVDKQEKADELV 577

Query: 512 EHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
                S    A +HG +   D++S +  FK    KLL+AT+V   G+DV    +++  + 
Sbjct: 578 AQLMRSGYNCAPLHGGIDQFDRDSTILDFKAAKIKLLVATSVAARGLDVKKLILVVNYDC 637

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +     +H++ GR GR            P
Sbjct: 638 PNHYEDYVHRV-GRTGRAGNKGYAYTFILP 666


>gi|88859624|ref|ZP_01134264.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas tunicata D2]
 gi|88818641|gb|EAR28456.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas tunicata D2]
          Length = 455

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 144/383 (37%), Gaps = 45/383 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +PT  Q +AI  I++       M+   Q   G+GKT    + +   +  G        +A
Sbjct: 23  TPTPIQLAAIPAIIEG----RDMMAAAQ--TGTGKTAGFTLPLLERLSKGKPAGNNQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +N ++   ++ G +    +   L R       I++ T  
Sbjct: 77  LVLTPTRELAAQVAESVELYGKNLKLTSFVVYGGVKVNPQMMRLRR----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      +   +K       ++   P  R  ++ S
Sbjct: 133 RLLDLFNQRAVKFDQLEVLVLDEADRMLDMGFIHDIKK-------ILKVLPAKRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +E+    + + KK   +   I +     
Sbjct: 186 ATFSDDIRNLAKGLINDPVEVSVAPANTTAATVEQRLHPVDKAKKPALLSHLILQNDWKQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E    + A IHG  S   +   +  FK+G  ++L+AT ++  
Sbjct: 246 VLVFTRTKHGANRLVKQLEADKINAAAIHGNKSQSARMKALAGFKDGQVRVLVATDIVAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++  +  +     +H++ GR GR       I       +K       ++  
Sbjct: 306 GLDIDQLPQVVNFDLPNIAEDYVHRI-GRTGRAGASGHAISFVTTEEAKELADIERLINA 364

Query: 614 TED-----GFLIA----EEDLKQ 627
           T       GF  +    E DL  
Sbjct: 365 TIAREVVPGFEPSNQVKETDLNI 387


>gi|157376496|ref|YP_001475096.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157318870|gb|ABV37968.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 419

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 127/367 (34%), Gaps = 55/367 (14%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----- 318
           +L  + +S PT  Q  AI  IL           +     G+GKT    + +   +     
Sbjct: 15  LLSELGYSSPTPIQAHAIPVILAGQD------IMAGAQTGTGKTAAFALPILQKLSECDV 68

Query: 319 ----------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
                         +A+++ P   LA Q  +   KY +++ +   I+ G +    +  AL
Sbjct: 69  ELSDTKQTVSLKPVRALVLTPTRELALQVNQSFAKYGKDSGLNTAIVYGGVSIDAQADAL 128

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKA 418
           +        I++ T     D ++   L L  +        D     G +  +   L Q  
Sbjct: 129 KA----GVDILVATPGRLLDHLRRGSLTLKQLNFLVFDEADRMLDMGFKDEINAILKQVP 184

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           +    LL +AT  P    L+     D            P    +   N +   +E++   
Sbjct: 185 SKRQTLLFSATFDPSVFALSKRLQQD------------PKLIEVDKRNTLAAKVEQVVYA 232

Query: 479 LSEGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           +   +K+  IC  ++ K           +   +   +            HG +S   +E 
Sbjct: 233 VDADRKSELICHLVKSKLWQQVLIFSRKKQGADNIAAKMVKAGIKAQAFHGDLSQAVREK 292

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            +  FK G  ++L+AT V   G+DV +  +++           +H++ GR GR       
Sbjct: 293 ALQQFKQGEIQVLVATDVAARGLDVEELKVVVNYELPFIAEDYIHRI-GRTGRAGNAGLA 351

Query: 593 ILLYHPP 599
           I LY   
Sbjct: 352 ITLYSEE 358


>gi|110833595|ref|YP_692454.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110646706|emb|CAL16182.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 459

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 137/374 (36%), Gaps = 41/374 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQAQAIPAVLSGRDV------MAAAQTGTGKTAGFTLPLLERLRTGSPARNNQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +  Y +N  +   ++ G +    + + L     G   +++ T  
Sbjct: 77  LVLTPTRELAAQVAESVATYGKNLPLTSTVVFGGVKINPQMQRLR----GGCDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L ++I+DE  R      +   +K      +L    P  + L+ ++
Sbjct: 133 RLLDLYQQNAVKFDHLEVLILDEADRMLDMGFIHDIRK------ILAKLPPKRQNLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I  +  K     P++  I P N   E++ +    + + +K   +   I+E     
Sbjct: 187 TFSSEIRALA-KGLVNDPVEVDISPRNTTTELVTQWIAPVDKKRKPALLTHLIQENGWFQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    +     E      A IHG  S   +   +  FK+G  + L+AT +   
Sbjct: 246 VLVFSRTKHGANKLAKQLEANGIEAAAIHGNKSQNARTRALADFKSGKVRALVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++  +  +     +H++ GR GR       I L      +       + + 
Sbjct: 306 GLDIEQLPQVVNVDLPNVPEDYVHRI-GRTGRAGATGQAISLVSADEFQQLKDIERLTQQ 364

Query: 614 TED-----GFLIAE 622
             +     GF  +E
Sbjct: 365 QLERKIVAGFEPSE 378


>gi|172040364|ref|YP_001800078.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
 gi|171851668|emb|CAQ04644.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
          Length = 778

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 135/379 (35%), Gaps = 41/379 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  QE  I  ++           +     G+GKT    + + + +       QA+++A
Sbjct: 153 KPSPIQEQTIPLLMAGEDV------VGLAQTGTGKTAAFALPILSRLNLKSRKPQALVLA 206

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  + + +    + +  I G  P   +   L R     AH+++GT     
Sbjct: 207 PTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLRR----GAHVVVGTPGRVI 262

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D +Q   L        +L   DE    G Q+ ++   +           TP  + + L S
Sbjct: 263 DHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILED----------TPEDKQVALFS 312

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                  +   K     P +  +    R  E IE+  +++   +K   +   +E      
Sbjct: 313 ATMPSAIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYLIVHHREKLDALTRILEVTDFDA 372

Query: 500 F------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  ++  E             A I+G ++   +E  +D  K+G   +L+AT V   
Sbjct: 373 MIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 432

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV   + +   +      + +H++ GR GR       +L   P   +   +     K+
Sbjct: 433 GLDVERITHVFNYDIPRDTESYVHRI-GRTGRAGRSGRAVLFVTPRERRMLKSIERATKS 491

Query: 614 TEDGFLIAEED--LKQRKE 630
             +   +   D   + RK 
Sbjct: 492 RLNEIELPSVDQVNEARKA 510


>gi|145299438|ref|YP_001142279.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852210|gb|ABO90531.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 613

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/365 (19%), Positives = 139/365 (38%), Gaps = 36/365 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L+++ +  P+  Q +AI  ++           + Q   G+GKT    + + + +EAG   
Sbjct: 23  LQDVGYERPSPIQAAAIPHLMAGHD------LLGQAQTGTGKTAAFALPLLSRLEAGNRN 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E  ++Y ++      + I G      + +AL R     A +++
Sbjct: 77  TQVLVLAPTRELALQVAEACQRYAKHMPDFHVLPIYGGSSYETQTRALRR----GAQVVV 132

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATP 430
           GT     D I+   L        +L   DE  R G    +     Q  +   V L +AT 
Sbjct: 133 GTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPSTRQVALFSATM 192

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
             +   +    L      KI  K +    I+     +  + ++    +++  E  +A  +
Sbjct: 193 PDQIRRVAQKHLKQPKEIKIVSKTSTAPTIRQRYWQVTGLHKLDAMTRLLEVEPYEAVLV 252

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +         ++  E           +   +HG +    +E  +D  + G   +LIAT
Sbjct: 253 FVRT--------KNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIAT 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V+  G+DV   + ++  +  +   + +H++ GR GR       IL   P   +      
Sbjct: 305 DVVARGLDVERITHVVNYDIPYDTESYVHRI-GRTGRAGRKGEAILFVAPRERRMLRAIE 363

Query: 609 SVLKN 613
              + 
Sbjct: 364 HATRQ 368


>gi|242022822|ref|XP_002431837.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212517169|gb|EEB19099.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 630

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 91/462 (19%), Positives = 178/462 (38%), Gaps = 55/462 (11%)

Query: 202 IAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258
           IAEA   ++ P   K+F   +        +  +EL   +  ++     F+++I  PI   
Sbjct: 165 IAEAERWVNCPPIIKNFYIEDSVIANMSEIEVEELRKKKSIIINNEMDFEEKILNPIQTF 224

Query: 259 GKIAQKILRNI------PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +  Q     +       F  P+  Q  A   +L           I     G+GKTL  L
Sbjct: 225 EQAFQHYPEILDEIEKQGFKVPSPIQSQAWPILLSGKD------LIGIAQTGTGKTLAFL 278

Query: 312 IAMAAAVEA----------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           +     ++           G   +I+AP   LA Q    +KKY+    I    + G   +
Sbjct: 279 LPALIHIDGQKIPGTKPRGGPNVLIIAPTRELALQIENEVKKYS-YKNIKCLCVYGGGNR 337

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQ 416
             +   ++        III T     D +    + L  +     DE  R          +
Sbjct: 338 REQINTVQE----GVEIIIATPGRLNDLVNNSYITLSSITYIVLDEADRMLDMGFEPQIR 393

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIER 474
           K      LL+   P  ++++ ++    D+ ++ ++     PI+  I  ++   +  V++R
Sbjct: 394 K------LLLDIRPDRQSVMTSATWPNDVQRLAKRYM-SNPIQVFIGSLDLTAVHSVLQR 446

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSV-----VERFNSLHEHFTSS---IAIIHGRMS 526
              +++EG K  ++   +   KE   + +         + L    + +      IHG   
Sbjct: 447 -VYIINEGDKKSYLFDILRNLKEEEDKIIVFVGKKNMADDLSCDLSLNRFMCQCIHGGRE 505

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
            +D+E  +D FK G  K+LIAT V   GID+ D + ++  +  +     +H++ GR GR 
Sbjct: 506 QMDREQALDDFKTGCVKILIATDVASRGIDISDITKVLNYDFPNNIEEYVHRV-GRTGRA 564

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
            +    I  +      ++   +S+++       I   ++++R
Sbjct: 565 GKTGEAITFFTRSNWMHAGDLISIMEEANQSVPIELYEMRER 606


>gi|195493240|ref|XP_002094331.1| GE20258 [Drosophila yakuba]
 gi|194180432|gb|EDW94043.1| GE20258 [Drosophila yakuba]
          Length = 789

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/398 (19%), Positives = 146/398 (36%), Gaps = 50/398 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              + ++ + + +     PT  Q  A+   L           I     GSGKT   +  M
Sbjct: 274 FGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRD------IIGIAKTGSGKTAAFIWPM 327

Query: 315 AAAVEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              V    Q         +I+AP   L+ Q Y   KK+ +   + V    G   +  + K
Sbjct: 328 LMHVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSK 387

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK- 417
           ALE+     A II+ T     D ++           L+L   D     G + +++     
Sbjct: 388 ALEQ----GAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNH 443

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITE---KPAGRKPIKTVII---PINRIDE 470
                  L+ +AT   R   L      D  +I +     A +   ++V +   P+ + + 
Sbjct: 444 VRPDRQCLMFSATFKKRIERLARDVLTDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNW 503

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           ++  L   LSEG    ++  +++ +  SN   + E           +  ++HG M   D+
Sbjct: 504 LLVHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKE----------YNCLLLHGDMDQADR 553

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             V+  FK   C +L+AT V   G+D+     ++  +         H++ GR GR  E  
Sbjct: 554 NKVITQFKRKECDILVATDVAARGLDIPHIKNVVNYDTARDIETHTHRI-GRTGRAGEKG 612

Query: 591 SCILLYHPPLSKNSYTRLSVLKNT-----EDGFLIAEE 623
           +   L      + +   +  L+       +D   +A +
Sbjct: 613 NAFTLVTDKDKEFAGHLVRNLEGADQQVPDDLMELAMK 650


>gi|149633893|ref|XP_001512924.1| PREDICTED: similar to helicase like protein 2 [Ornithorhynchus
           anatinus]
          Length = 651

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/374 (17%), Positives = 131/374 (35%), Gaps = 47/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + +   G          
Sbjct: 189 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKE 242

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K+   +++   ++ G      + + LER 
Sbjct: 243 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLER- 301

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLM 426
                H+++ T     D ++  K+ L       +DE  R          ++      +  
Sbjct: 302 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPQ 358

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
               I  T++ ++    +I  +       + I   +  +    E I +  V + E  K  
Sbjct: 359 K--GIRHTMMFSATFPKEIQMLARDFLD-EYIFLAVGRVGSTSENITQKVVWVEESDKRS 415

Query: 487 WICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           ++   +               +   +       H   +   IHG  S  D+E  +  F++
Sbjct: 416 FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 475

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++  
Sbjct: 476 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATSFFNER 534

Query: 600 LSKNSYTRLSVLKN 613
               +   L +L  
Sbjct: 535 NINITKDLLDLLVE 548


>gi|291407356|ref|XP_002719895.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
           [Oryctolagus cuniculus]
          Length = 661

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 430

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 431 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 544 FFNERNVNITKDLLDLLVE 562


>gi|6753620|ref|NP_034158.1| ATP-dependent RNA helicase DDX3X [Mus musculus]
 gi|2500528|sp|Q62167|DDX3X_MOUSE RecName: Full=ATP-dependent RNA helicase DDX3X; AltName:
           Full=D1Pas1-related sequence 2; AltName: Full=DEAD box
           RNA helicase DEAD3; Short=mDEAD3; AltName: Full=DEAD box
           protein 3, X-chromosomal; AltName: Full=Embryonic RNA
           helicase
 gi|407996|gb|AAA53630.1| RNA helicase [Mus musculus]
 gi|1835122|emb|CAA86261.1| dead-box RNA helicase [Mus musculus]
 gi|74187753|dbj|BAE24540.1| unnamed protein product [Mus musculus]
 gi|74190343|dbj|BAE37257.1| unnamed protein product [Mus musculus]
 gi|123858229|emb|CAM15722.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Mus
           musculus]
 gi|1098036|prf||2115205A RNA helicase
          Length = 662

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 145/379 (38%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + A G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  ID+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDK-RSF 430

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 431 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 544 FFNERNINITKDLLDLLVE 562


>gi|326928709|ref|XP_003210518.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Meleagris gallopavo]
          Length = 1027

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/364 (20%), Positives = 141/364 (38%), Gaps = 41/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  AI  I+           I     GSGKT+  L+ M   +          G  
Sbjct: 390 KPTPIQSQAIPAIMNGRD------LIGIAKTGSGKTIAFLLPMFRHIMDQRALEEGEGPI 443

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AVIM P   LA Q  +  KK+++   + V  + G    + +   L+R     A II+ T 
Sbjct: 444 AVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR----GAEIIVCTP 499

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +           ++  V++DE  R                  ++    P  +T+
Sbjct: 500 GRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVM------RIVDNVRPDRQTV 553

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     +  +  +    KPI+  +   + +   +E+  +V+ E  K   +   +   
Sbjct: 554 MFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHY 612

Query: 496 KE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +E      F    E  + L +    +      +HG +   D++S+++ FKNGTCKLL+AT
Sbjct: 613 QEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVAT 672

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           +V   G+DV    +++  +  +     +H+  GR GR               ++ +   +
Sbjct: 673 SVAARGLDVKQLMLVVNYSCPNHYEDYVHR-AGRTGRAGNKGFAYTFITEDQARYAGDII 731

Query: 609 SVLK 612
             L+
Sbjct: 732 KALE 735


>gi|307215190|gb|EFN89962.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
          Length = 540

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/367 (19%), Positives = 138/367 (37%), Gaps = 41/367 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            PT  Q       L        M+ I     GSGKTL  ++     +        + G  
Sbjct: 104 EPTSIQAQGWPIAL----SGRDMVGI--ASTGSGKTLSYILPAIVHINSQPKLSRKDGPI 157

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +    +  ++ I    + G  P+  + + L+        I+I T 
Sbjct: 158 ALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARDLDS----GVEIVIATP 213

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       +   +++DE  R          +K      ++    P  +TL+ +
Sbjct: 214 GRLLDFLESGKTNLKRCTYLVLDEADRMLDMGFEPQIRK------IIEQIRPDRQTLMWS 267

Query: 439 SLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    ++  + E          V    +   + I ++I+  +    E K +  +   + E
Sbjct: 268 ATWPKEVKNLAEDFLKDYAQINVGSLQLAANHNILQIIDVCQDYEKENKLSTLLKEIMAE 327

Query: 495 KKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +          R V E    +      ++ I HG  +  +++ V+  F++G   +L+AT
Sbjct: 328 SENKTIVFIETKRRVDEITRKMKRDGWPAVCI-HGDKTQQERDWVLQDFRSGKAPILVAT 386

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV D   +I  +        +H++ GR GR ++  +    + P  S  +   +
Sbjct: 387 DVAARGLDVEDVKFVINFDYPSCSEDYVHRI-GRTGRRQKTGTAYTFFTPNNSNKANDLI 445

Query: 609 SVLKNTE 615
            VLK   
Sbjct: 446 QVLKEAN 452


>gi|282164729|ref|YP_003357114.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
 gi|282157043|dbj|BAI62131.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
          Length = 471

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/352 (22%), Positives = 132/352 (37%), Gaps = 40/352 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + F   T  QE AI   L           I Q   G+GKT    I M   ++AG   
Sbjct: 17  LAGMGFEEATPIQEQAIPAALAGKDV------IGQAQTGTGKTAAFGIPMIENIDAGSGD 70

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++ P   LA Q  E + +  +   I    I G      +   L+R    +  II+G
Sbjct: 71  IQGIVITPTRELAVQVAEELNRIGEFRGIHTLPIYGGQDIKRQINGLKR----RPQIIVG 126

Query: 382 THALFQDSIQYYK---------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           T     D +   K         ++L   DE    G  + ++   K T             
Sbjct: 127 TPGRLVDHMMRRKTISLKNIRTVVLDEADEMLDMGFIEDIEEILKRTPEG---------R 177

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I K+ E+   + P    I   +      E+    + E  K   +C  +
Sbjct: 178 QTLLFSATIPAPIRKLAERFM-KDPQTIGIKSKSMTVSGTEQAYYEVPEKHKFEVLCRLL 236

Query: 493 EEKK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + +       F     R + L +           IHG ++   ++SVM  FK GT ++L+
Sbjct: 237 DVQLPALAIVFVRTKRRVDELTKALGERGYPAEGIHGDLAQSKRDSVMRGFKEGTTEVLV 296

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT V   G+D+   + +   +      + +H++ GR GR  +  + I    P
Sbjct: 297 ATDVAARGLDISGVTHVYNLDIPQDPDSYVHRI-GRTGRAGKKGTAITFVTP 347


>gi|118097584|ref|XP_414629.2| PREDICTED: similar to Prp5-like DEAD-box protein [Gallus gallus]
          Length = 1043

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/364 (20%), Positives = 141/364 (38%), Gaps = 41/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  AI  I+           I     GSGKT+  L+ M   +          G  
Sbjct: 398 KPTPIQSQAIPAIMNGRD------LIGIAKTGSGKTIAFLLPMFRHIMDQRALEEGEGPI 451

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AVIM P   LA Q  +  KK+++   + V  + G    + +   L+R     A II+ T 
Sbjct: 452 AVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR----GAEIIVCTP 507

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +           ++  V++DE  R                  ++    P  +T+
Sbjct: 508 GRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVM------RIVDNVRPDRQTV 561

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     +  +  +    KPI+  +   + +   +E+  +V+ E  K   +   +   
Sbjct: 562 MFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHY 620

Query: 496 KE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +E      F    E  + L +    +      +HG +   D++S+++ FKNGTCKLL+AT
Sbjct: 621 QEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVAT 680

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           +V   G+DV    +++  +  +     +H+  GR GR               ++ +   +
Sbjct: 681 SVAARGLDVKQLMLVVNYSCPNHYEDYVHR-AGRTGRAGNKGFAYTFITEDQARYAGDII 739

Query: 609 SVLK 612
             L+
Sbjct: 740 KALE 743


>gi|150017632|ref|YP_001309886.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904097|gb|ABR34930.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 481

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/352 (22%), Positives = 135/352 (38%), Gaps = 35/352 (9%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           +  + F   TK QE  I   L+          +++   GSGKT    I +   V   E  
Sbjct: 19  ISMLNFKELTKVQEQVIPIALE------EKDIVVKSKTGSGKTASYAIPICQLVDWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E      +  +I    I G      + K L++    + HI++G
Sbjct: 73  PQALVITPTRELAIQVKEDFFNIGRFKRIKAAAIYGKSSFYDQEKELKQ----KTHIVVG 128

Query: 382 THALFQDSIQY--------YKLILVIVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+           LI+   DE    G  +Q   + +  +   V ++ +  +P
Sbjct: 129 TPGRIIDHIEKGTFDLSKIKYLIIDEADEMLNMGFVEQIETIIKSLSKERVTMLLSATMP 188

Query: 433 R---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           +   TL    + D    +I E+      I      +N ++++     + + E   +  I 
Sbjct: 189 KDIETLCNKYMKDPIHIEIEEQNKAADNICQERYNVNELNKIDLLRDITILENPDSCMIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +  V+               IHG M   D+  VM++FK G  + LIAT 
Sbjct: 249 --------CNTKQKVDEVYKELAKLQYDCRKIHGGMEQSDRLRVMNNFKLGYFRYLIATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           V   GID+ + + +I  +      + +H++ GR GR  ++   I       S
Sbjct: 301 VAARGIDIDNITHVINYDIPEDKESYVHRI-GRTGRAGKMGRAITFVTQNES 351


>gi|170760570|ref|YP_001788120.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 524

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/361 (19%), Positives = 142/361 (39%), Gaps = 26/361 (7%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----E 319
           ++++ F  P+  QE +I  +L+          I Q   G+GKTL     + +++     +
Sbjct: 19  IQHMGFETPSAIQEKSIPVVLEG------ADVIAQAQTGTGKTLAFGAPVISSLCDNEKK 72

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G +A+++ P   LA Q  + +K+ ++ ++  V  + G      + K ++        I+
Sbjct: 73  KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS----GVDIV 128

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLT 438
           +GT     D I    L L  +D       +    L          +M +TP   +T++ +
Sbjct: 129 VGTPGRILDHINRRTLKLGGID--FLILDEADEMLNMGFIEDIETIMESTPEEKQTMLFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +     I K+             I+  +   + I +    +    K   IC  I+ ++  
Sbjct: 187 ATMPAAIKKLALNYMKEDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRIIDSEEPE 246

Query: 498 -----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  V+      +    ++  +HG MS   + + +  FK  T   L+AT V  
Sbjct: 247 SAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GIDV + S +I  +      + +H++ GR GR ++  +   L  P    +      + K
Sbjct: 307 RGIDVENISHVINYDIPQDAESYVHRI-GRTGRADKEGTAYSLVTPREVSSIRQIERITK 365

Query: 613 N 613
           +
Sbjct: 366 S 366


>gi|221131953|ref|XP_002164829.1| PREDICTED: similar to LOC556764 protein [Hydra magnipapillata]
          Length = 674

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 152/438 (34%), Gaps = 59/438 (13%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG-------KIAQK 264
           PR  K+F    PA +  + +E+          R+       IP   +             
Sbjct: 64  PRFEKNFYREHPAVQSRSLEEVDMF----RKTREISVVGRNIPKPCQSFDELCIPDYVGD 119

Query: 265 ILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
            LR   F  PT  Q       L        M+ I Q   GSGKT+  ++     +     
Sbjct: 120 ALRKFNFKEPTAIQSQGFSVAL----SGRNMVGIAQ--TGSGKTISFVLPAVIHINNQPP 173

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +++ P   LA Q      ++   T++    I G   +  + + LER +   
Sbjct: 174 LNQGDGPICLVLCPTRELAIQVQSVAGQFGLTTRVRSTCIYGGASKGPQIRDLERGSE-- 231

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             I++ T     D I+  K        L+L   D     G + +++           +  
Sbjct: 232 --IVVATPGRLIDLIEIRKISLKRVTYLVLDEADRMLDMGFEPQIRKI---------IDQ 280

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  + L+ ++    ++ K+ E          +       +  I ++  V  E +K   
Sbjct: 281 IRPDRQVLMWSATWPKEVRKLAEDFLTDYIQINIGSSDIHANHNILQIVDVCEEYEKDRK 340

Query: 488 ICPQIEEKK----------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           +   +EE                R   +    L +    ++ I HG  S  ++E V+  F
Sbjct: 341 LVKLLEEIMGEKENKTIIFCETKRKTDDITRRLRKDGWPAMCI-HGDKSQPEREWVLKEF 399

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G   +LIAT V   G+D+ D + ++  +  + G   +H++ GR  R     +    + 
Sbjct: 400 RSGKAPILIATDVASRGLDIPDINFVVNYDYPNSGEDYIHRI-GRTARAGNTGTAYTFFT 458

Query: 598 PPLSKNSYTRLSVLKNTE 615
               K +   L V++   
Sbjct: 459 SANGKYAAELLKVMEEAN 476


>gi|331701930|ref|YP_004398889.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129273|gb|AEB73826.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 506

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 125/359 (34%), Gaps = 35/359 (9%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAV 325
            F   T  Q   I  +L+          I Q   G+GKT    + +   ++      QA+
Sbjct: 20  GFEEATPIQGETIPMVLKGEDV------IGQAQTGTGKTAAFGLPILQKIDFDNPNVQAL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I++P   LA Q  E I +  ++ +  V+++ G      +  AL     G   I++GT   
Sbjct: 74  IISPTRELAIQTQEEIYRLGKDEKAKVQVVYGGADIRRQINAL----KGHPQIVVGTPGR 129

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT- 434
             D I+ + L L  V        DE    G        + Q       LL +AT   +  
Sbjct: 130 ILDHIRRHTLKLEHVKTLVLDEADEMLNMGFLDDIEDIIKQTPKERQTLLFSATMPAQIK 189

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + +  + D     I  K      I    + +   ++     +    +  +   +  + +
Sbjct: 190 RVGVQFMRDPHQVTIKAKELTTDLIDQYYVRVKEYEKFDTMTRFFDVQDPEVTIVFCRTK 249

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            + +   + +  R            A +HG ++   +  +M  FK     +L+AT V   
Sbjct: 250 RRVDEVSKGLQAR--------GYKAAGLHGDLTQARRTQIMQEFKAAKIDILVATDVAAR 301

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           GID+   + +   +        +H++ GR GR  +    I    P           + K
Sbjct: 302 GIDISGVTHVYNYDIPQDPDGYVHRV-GRTGRAGKHGVSITFATPNEMDYLREIEKLTK 359


>gi|188996905|ref|YP_001931156.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931972|gb|ACD66602.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 405

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 141/354 (39%), Gaps = 33/354 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           L  + +S PT+ QE AI  ++           + Q   G+GKT    + +   V   +  
Sbjct: 21  LDELGYSKPTEIQEKAIPAVMTGKD------LVAQAQTGTGKTAAFGVPIVEKVNPKQKK 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  + IK+  +N ++    + G    +H+   L+    G   +++G
Sbjct: 75  VQALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQINFLK---KGSDVVVVG 131

Query: 382 THALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTL 435
           T    +D ++   L L  V     DE  R      +   ++       +M+  P   + L
Sbjct: 132 TPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEE-------IMSYLPEDRQNL 184

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I  + E+          + P     E I+++   ++   K   +   + + 
Sbjct: 185 LFSATMPKEILDLAEEFLNENYETIRVKPDEVTVEKIKQIIYRVNPRDKFKKLTEVLSQN 244

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +       +  +   +           + + IHG  S   +E+V+ +F+ G  K+L+AT 
Sbjct: 245 EAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKILVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           V   G+D+    ++I         + +H++ GR GR     + I +  P   K 
Sbjct: 305 VAARGLDIKGVDLVINYGLPRDAESYIHRI-GRTGRAGREGTAISIMTPSEDKQ 357


>gi|52430509|gb|AAH82849.1| DDX5 protein [Xenopus laevis]
          Length = 608

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 154/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E            ++ K+     IN    I      + P 
Sbjct: 50  PKFEKNFYQEHPDVVRRTPQECDQY--------RRSKEITVRGINCPKPILNFNEASFPA 101

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +        +     GSGKTL  L+     + 
Sbjct: 102 NVMEAIKRQNFTEPTPIQGQGWPVALSGLD------MVGVAMTGSGKTLSYLLPGIVHIN 155

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 156 HQPFLQRGDGPILLVLAPTRELAQQVQQVAAEYGRACRLRSTCIYGGAPKGPQIRDLER- 214

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 215 ---GVEICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 271

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRKPIKTVII--PINRIDEVIERL 475
             L+ +AT       L      D   I     E  A    ++ V +     + D+++  +
Sbjct: 272 QTLMWSATWPKEVRQLAEDFLRDYVHINIGALELSANHNILQIVDVCNDGEKDDKLVRLM 331

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   +    L      ++ I HG  S  +++ V++
Sbjct: 332 EEIMSEKENKTIVFVETK-------RRCDDLTRRLRRDGWPAMGI-HGDKSQQERDWVLN 383

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 384 EFKHGKSPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSSKTGTAYTF 442

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 443 FTPGNIKQVNDLISVLREAN 462


>gi|169145046|emb|CAQ08925.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
          Length = 652

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 156/450 (34%), Gaps = 60/450 (13%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 39  RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 93

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 147

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 148 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 207

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 208 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 263

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 264 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 323

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 324 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 375

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGID--VVDASIIIIENAEHFGLAQLHQLRGRVGR 585
            +++ V++ F++G   +LIAT V   G+   V D   +I  +  +     +H++ GR  R
Sbjct: 376 PERDWVLNEFRSGKAPILIATDVASRGLGLYVEDVKFVINYDYPNSSEDYVHRI-GRTAR 434

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
                +    + P   K +   + VL+   
Sbjct: 435 STNKGTAYTFFTPGNLKQARELIKVLEEAN 464


>gi|313123075|ref|YP_004033334.1| dead box ATP-dependent RNA helicase srmb [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312279638|gb|ADQ60357.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 481

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 134/362 (37%), Gaps = 37/362 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ----- 323
            F   T  Q   I   L           I Q   G+GKT    + +   ++   Q     
Sbjct: 20  GFEEATPIQAQTIPLALAGQDV------IGQAQTGTGKTAAFGLPILQKLDLDKQEQAIQ 73

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA Q  E + +  ++    V+++ G      + +AL++       I++GT 
Sbjct: 74  AIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALKKA----PEILVGTP 129

Query: 384 ALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PIP 432
               D ++   + L  V        DE    G  Q +   LT        LL +AT P P
Sbjct: 130 GRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQTLLFSATMPKP 189

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            + L    + D  + KI  K      I    + +   ++     +++  E      +  +
Sbjct: 190 IQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLIDVENPDLAVVFGR 249

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            + + +   R +V R          + A IHG ++   +  V+  FK G   +L+AT V 
Sbjct: 250 TKRRVDELTRGLVAR--------GYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDVA 301

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+   + +   +      + +H++ GR GR  +    +    P       T   ++
Sbjct: 302 ARGLDISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGKSGMSVTFVTPNEIGYMRTIEDLI 360

Query: 612 KN 613
           K 
Sbjct: 361 KK 362


>gi|212634102|ref|YP_002310627.1| DEAD box family ATP-dependent RNA helicase [Shewanella
           piezotolerans WP3]
 gi|212555586|gb|ACJ28040.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
           piezotolerans WP3]
          Length = 422

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 132/342 (38%), Gaps = 27/342 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG-----Q 323
            PT  Q +AI  IL           +     G+GKT    + +   +    AG      +
Sbjct: 36  EPTPIQTAAIPVILSGKD------LMASAQTGTGKTAAFTLPILQKLAMQSAGKETDSIR 89

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  + + +Y  NT +   +I G +    +  +L         I++ T 
Sbjct: 90  ALILVPTRELAVQVNKSVTEYGVNTALKSMVIYGGVSIDAQASSLAA----GVDIVVATP 145

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D ++   L L+ +D    F    R+         + +L       +TL+ ++    
Sbjct: 146 GRLLDHLRRGSLSLMAID-TLVFDEADRMLDMGFMDEINAILKQLPTERQTLLFSATFSD 204

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---- 499
            I ++++K    KP++  +   N   + +E++   +   +KA  I   I +         
Sbjct: 205 AIYRLSKK-LLSKPVRIEVDKANSAADSVEQIVYAVDSDRKAALISHLINKYHWQQVLIF 263

Query: 500 --FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   +   S       +    HG +S   +E V++ FK G  K L+AT V   G+D+
Sbjct: 264 SRKKQTADTITSKLVAAGVAAKAFHGDLSQGAREQVLNDFKAGNIKALVATDVAARGLDI 323

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V+ + ++           +H++ GR GR       I LY   
Sbjct: 324 VELNYVVNYEIPFVAEDYIHRI-GRTGRAGNSGKAITLYSED 364


>gi|297847866|ref|XP_002891814.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337656|gb|EFH68073.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 501

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 145/363 (39%), Gaps = 39/363 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q          M+ K R L I   + GSGKT+  L+     V A        G  
Sbjct: 121 EPTPIQSQGWP-----MAMKGRDL-IGIAETGSGKTISYLLPAIVHVNAQPILAPGDGPI 174

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +   K+  +++I    I G +P+  + + L++       I+I T 
Sbjct: 175 VLVLAPTRELAVQIQQEASKFGSSSKIKSTCIYGGVPKGPQVRDLQK----GVEIVIATP 230

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       ++  +++DE  R          +K  +         P  +TL  +
Sbjct: 231 GRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIR------PDRQTLYWS 284

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +    ++ ++++K     P K +I   + + +  I ++  V+SE +K   +   +E+  +
Sbjct: 285 ATWPKEVEQLSKKFL-YNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMD 343

Query: 498 S-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   + +   ++              IHG  S  +++ V+  F++G   ++ AT V
Sbjct: 344 GSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDV 403

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D   +I  +        +H++ GR GR     +    +    ++ +    ++
Sbjct: 404 AARGLDVKDVKYVINYDFPGSLEDYVHRI-GRTGRAGAKGTAYTFFTVANARFAKELSNI 462

Query: 611 LKN 613
           L+ 
Sbjct: 463 LEE 465


>gi|293331893|ref|NP_001169380.1| hypothetical protein LOC100383248 [Zea mays]
 gi|224029005|gb|ACN33578.1| unknown [Zea mays]
          Length = 498

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 130/347 (37%), Gaps = 44/347 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
           SPT  Q  +    +Q+         +     GSGKTL  L+     ++        G   
Sbjct: 172 SPTPIQAQSWPIAMQNQDV------VAIAKTGSGKTLGYLLPGFMHIKRLQNSTRNGPTV 225

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  +   K+ ++++I    + G  P+  + + L+R       +++ T  
Sbjct: 226 LVLAPTRELATQILDEAVKFGRSSRISCTCLYGGAPKGPQLRDLDR----GVDVVVATPG 281

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT 434
              D ++  K        L+L   D     G   Q R  + +       L+ TAT     
Sbjct: 282 RLNDILEMRKVSLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPHRRQTLMYTATWPKEV 341

Query: 435 L-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +L     + I  +    A     + V II  +     +E++      G K    
Sbjct: 342 RRIADDLLVHPVQVTIGSVDSLVANSSITQHVEIITPSEKQRRLEQILRSQDSGSKILIF 401

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C           R   +   +L   F +S   IHG  S  ++E V++ F++G   +L+AT
Sbjct: 402 CTT--------KRMCDQLARTLTRQFGASA--IHGDKSQSEREKVLNQFRSGRSPILVAT 451

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   G+D+ D  ++I  +        +H++ GR GR        + 
Sbjct: 452 DVAARGLDIKDIRVVINYDFPTGVEDYVHRI-GRTGRAGATGVAYIF 497


>gi|227878361|ref|ZP_03996316.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus
           JV-V01]
 gi|256849208|ref|ZP_05554641.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           MV-1A-US]
 gi|293380351|ref|ZP_06626422.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
 gi|227862040|gb|EEJ69604.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus
           JV-V01]
 gi|256713984|gb|EEU28972.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           MV-1A-US]
 gi|290923034|gb|EFD99965.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
          Length = 495

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 132/348 (37%), Gaps = 38/348 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE  I   LQ          I Q   G+GKT    + +   ++      QAV
Sbjct: 20  GFEEATPIQEQTIPLALQGKDV------IGQAQTGTGKTAAFGLPILQMIDKKEKAIQAV 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E + +  ++    V+++ G      + ++L+   H    I++GT   
Sbjct: 74  IIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK---HHVPSILVGTPGR 130

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D ++   + L  V        DE    G  Q +           +L  A    +TL+ 
Sbjct: 131 LLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDI---------ESILKYAKNRQQTLLF 181

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I +I EK     P    I       ++IE+  V   E +K   +C  I+ +  
Sbjct: 182 SATMPKPILRIGEKFMDH-PEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRLIDVQGP 240

Query: 497 --ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L     +     A IHG +S   + SV+  F+ G   +L+AT V 
Sbjct: 241 DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDILVATDVA 300

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 301 ARGLDISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGQNGISVTFVTPN 347


>gi|294894930|ref|XP_002775023.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239880806|gb|EER06839.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 647

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 151/422 (35%), Gaps = 55/422 (13%)

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIP------------FSPTKSQESAIKDILQDMS 289
           L+R++   EI   ++V   I Q     +P             SPT  Q       L    
Sbjct: 179 LVRRRLDIEIIHGVDVPNPITQFEEACLPDYIMVEIQKAGFVSPTPIQVQGWPVAL---- 234

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFI 341
               M+ I   + GSGKTL  L+     + A        G   +++AP   LA Q  E  
Sbjct: 235 SGRDMVGI--AETGSGKTLAFLLPAVVHINAQPYLQKGDGPIVLVLAPTRELALQIKEEC 292

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLI 396
            ++ ++++I      G +P+  + + L+        I I T     D ++       ++ 
Sbjct: 293 DRFGRSSRISNTCCYGGVPRGPQARMLQN----GVEICIATPGRLIDFLESEVTNLRRVT 348

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            +++DE  R                  ++    P  +TL+ ++    D+ ++       +
Sbjct: 349 YLVLDEADRMLDMGFE------PQVRKIVSQIRPDRQTLMWSATWPKDVQQLARDLCNEE 402

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI-------------EEKKESNFRSV 503
           P+   +         I++   V+ E  K+  +   +             +    ++ +  
Sbjct: 403 PVHVTVGQSGHACHNIQQFVEVVEENVKSERLQALMRAVASASGGVFDAKALIFTDTKRC 462

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +    +          IHG     +++ V+  FK+G   ++IAT V   G+DV D   +
Sbjct: 463 ADDITRVLRRDGWPALSIHGDKKQSERDWVLAEFKSGRMPIMIATDVASRGLDVKDVKYV 522

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           I  +        +H++ GR GR     +    +    +K +   + +L+        A E
Sbjct: 523 INYDFPGTIEDYVHRI-GRTGRAGAHGTAYSFFTADKAKLAKPLIGILREASQPVPEALE 581

Query: 624 DL 625
            L
Sbjct: 582 RL 583


>gi|2580554|gb|AAC51831.1| dead box, Y isoform [Homo sapiens]
 gi|2580556|gb|AAC51832.1| dead box, Y isoform [Homo sapiens]
          Length = 660

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 146/379 (38%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I      K +   +     GSGKT   L+ + + +   G          
Sbjct: 201 PTPVQKHAIPII------KGKRDLVACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKE 254

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 255 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 313

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 314 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 370

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  +D+    
Sbjct: 371 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFL 429

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L ++ + G  +  +   +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 430 LDILGATGSDSLTLV-FVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 482

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 483 HQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 541

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 542 FFNEKNMNITKDLLDLLVE 560


>gi|307202910|gb|EFN82130.1| Probable ATP-dependent RNA helicase DDX46 [Harpegnathos saltator]
          Length = 1034

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 150/408 (36%), Gaps = 44/408 (10%)

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI--LRNIPFS-PTKSQESAIKDIL 285
              E+   ++  + ++ +   +        G   +++  L+ + +  PT  Q  AI  I+
Sbjct: 348 EEVEIYKEELEGIRVKGKGCPKPIKSWAQCGVTKKELEVLKKLGYEKPTPIQCQAIPAIM 407

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQH 337
                      I     GSGKTL  L+ M   +          G  A+IM P   L  Q 
Sbjct: 408 SGRD------LIGIAKTGSGKTLAFLLPMFRHILDQPPLADGDGPIALIMTPTRELCMQI 461

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
               KK+T++  +    + G    + +   L+R     A II+ T     D +       
Sbjct: 462 GRDSKKFTKSLGLSHVCVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAANSGRV 517

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
               ++  V++DE  R                  ++    P  +T++ ++     +  + 
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVM------RIMENVRPDRQTVLFSATFPRQMEALA 571

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-------NFRS 502
            +    +P++  +   + + + +E+  VVL E +K Y +   +   ++        + + 
Sbjct: 572 RR-ILTRPVEVQVGGRSVVCKDVEQHVVVLEEDQKFYKLLEILGHYQDKGSAIIFVDKQE 630

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             +         + S   +HG +   D++S +  FK G  KLL+AT+V   G+DV    +
Sbjct: 631 NADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRTKLLVATSVAARGLDVKHLVL 690

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           ++  +  +     +H+  GR GR                + +   L  
Sbjct: 691 VVNYDCPNHYEDYVHR-CGRTGRAGNKGYAYTFITSEQERYAGDILRA 737


>gi|259501949|ref|ZP_05744851.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           antri DSM 16041]
 gi|259170126|gb|EEW54621.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           antri DSM 16041]
          Length = 512

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 136/344 (39%), Gaps = 40/344 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  QE  I  +L+          I Q   G+GKT    + +   V+      QA+I++P 
Sbjct: 39  TPIQEQTIPMVLKGQDV------IGQAQTGTGKTAAFGLPIIEHVDTDNPNIQALIISPT 92

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             L  Q  E + +  ++  + V+++ G      + K+L+        I++GT    +D I
Sbjct: 93  RELVIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKH----HPQILVGTPGRLRDHI 148

Query: 391 QYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
             +         L+L   DE    G  + ++   K T             +TL+ ++   
Sbjct: 149 NRHTVKLGHIQTLVLDEADEMLNMGFLEDIEAIIKETPAE---------RQTLLFSATMP 199

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
            +I +I E+       +TV I    +   +     V +   + + I  ++ + ++ +   
Sbjct: 200 PEIKRIGEQFMTDP--ETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPDLTI 257

Query: 500 -FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F     R + L +   +     A IHG ++   +  +M  FK+G   +L+AT V   G+
Sbjct: 258 VFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDRRTKIMKKFKHGDLDILVATDVAARGL 317

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           D+   + +   +      + +H++ GR GR     + +    P 
Sbjct: 318 DISGVTHVYNYDIPSDPDSYVHRI-GRTGRAGHHGTSLTFVTPN 360


>gi|229823669|ref|ZP_04449738.1| hypothetical protein GCWU000282_00970 [Catonella morbi ATCC 51271]
 gi|229786906|gb|EEP23020.1| hypothetical protein GCWU000282_00970 [Catonella morbi ATCC 51271]
          Length = 518

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/344 (20%), Positives = 130/344 (37%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  Q+ A+   L+          I Q   G+GKT    + M   ++      Q +++A
Sbjct: 23  EPTPIQQQAVPVALEGQD------LIGQAQTGTGKTAAFGLPMLNKLDKNQSAIQGLVVA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + +  +  +  + ++ G      + + ++R    Q  I++GT     D
Sbjct: 77  PTRELAIQVQEELYRLGKYQRARIYVVYGGSSIGKQIEWIKRN---QPQIVVGTPGRILD 133

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIP--RTLV 436
            ++   L L  +        DE    G  +  +  +     +   LL +AT  P  R+L 
Sbjct: 134 LMRRKALSLKHLKTLVLDEADEMLNMGFIEDVKEIVATTPASRQTLLFSATMPPEIRSLA 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL--SEGKKAYWICPQIEE 494
              L +    KI  K      I+   I   R DE  +    +L      +A   C     
Sbjct: 194 DQFLKEPAHVKIEAKQMTADLIEQFFIKC-RDDEKFDIFTRLLDVQMPTQAIVFCRT--- 249

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+           +  +IHG +    + SV+++F+ G  +LL+AT V   G
Sbjct: 250 ------KKRVDEVARGLSLRGYNAELIHGDIPQQKRTSVINAFRQGQVELLVATDVAARG 303

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +D+   + +   +      + +H++ GR GR       I    P
Sbjct: 304 LDISGVTHVYNYDISQDPESYVHRI-GRTGRAGNEGMSITFVTP 346


>gi|90075746|dbj|BAE87553.1| unnamed protein product [Macaca fascicularis]
          Length = 396

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 133/368 (36%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L        M+ I Q   GSGKTL  L+     +          G  
Sbjct: 11  EPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPI 64

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +    Y + +++    I G  P+  + + LER       I I T 
Sbjct: 65  CLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 120

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 121 GRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 180

Query: 434 TLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              L      D ++I     E  A      I  V +   +  ++I+ ++ +++E +    
Sbjct: 181 VRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTI 240

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            +   +               IHG     +++ V++ F++G   +LIA
Sbjct: 241 IFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKGQPERDWVLNEFRSGKAPILIA 292

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +  +     +H++ GR  R     +    + P   K +   
Sbjct: 293 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQAREL 351

Query: 608 LSVLKNTE 615
           + VL+   
Sbjct: 352 IKVLEEAN 359


>gi|71800669|gb|AAZ41384.1| Ded1-like DEAD-box RNA helicase [Chironomus tentans]
          Length = 776

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/381 (18%), Positives = 134/381 (35%), Gaps = 51/381 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQ------- 323
            PT  Q+ AI  IL           +     GSGKT   L+ +    +E G         
Sbjct: 289 KPTPVQKYAIPIILSGRD------LMSCAQTGSGKTAAFLVPILNRMLEQGASMNPASNR 342

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                      +++AP   LA Q YE  KK++  +++   ++ G    + + + L+R   
Sbjct: 343 PYQRRKQYPLGLVLAPTRELATQIYEEAKKFSYRSRMRPAVLYGGNNTSEQMRELDR--- 399

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+I+ T     D I   K+ L  +     DE  R          Q         M  
Sbjct: 400 -GCHLIVATPGRLDDIINRGKIGLENLRFLVLDEADRMLDMGFEP--QIRHIIENRDMPP 456

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++    +I ++         I   +  +    E I +  + ++E +K  ++
Sbjct: 457 TGQRQTLMFSATFPKNIQELASDFLS-NYIFLAVGRVGSTSENITQTILWVNENEKRSYL 515

Query: 489 CPQIEEKKE--------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
              +   +E                 +   +            +  IHG  S  ++E  +
Sbjct: 516 LDLLSRLREGSPDYSPDSLTLIFVETKKGADALEEFLYQNKHPVTSIHGDRSQREREDAL 575

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G C +L+AT V   G+D+     +I  +        +H++ GR GR   +     
Sbjct: 576 KCFRSGDCPILVATAVAARGLDIPHVKHVINYDLPSDVEEYVHRI-GRTGRMGNLGIATS 634

Query: 595 LYHPPLSKNSYTRLSVLKNTE 615
            ++          + +L  T 
Sbjct: 635 FFNEKNRNIVSDLVELLIETN 655


>gi|89099486|ref|ZP_01172362.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89085872|gb|EAR64997.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 479

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 95/444 (21%), Positives = 154/444 (34%), Gaps = 66/444 (14%)

Query: 269 IPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QA 324
           + F   T  Q   I   L +         I Q   G+GKT    + +   ++      Q 
Sbjct: 1   MGFEEATPIQAETIPLSLANKD------LIGQAQTGTGKTAAFGVPLIDKIDTSKDVIQG 54

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+AP   LA Q  E + K     +  V  I G      + +AL++      HII+GT  
Sbjct: 55  IIIAPTRELAIQVSEELYKIGYGKRARVLSIYGGQDINRQIRALKKP----PHIIVGTPG 110

Query: 385 LFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
              D I+   L L  V        DE    G  + +           +L +     +TL+
Sbjct: 111 RVLDHIKRKTLRLDNVHTAILDEADEMLNMGFIEDI---------ESILASVPVERQTLL 161

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     I ++ E+   R P    +        +IE+  V + E  K   +   +  + 
Sbjct: 162 FSATMPAPIQRMAERFM-RDPQIIRVKAKEMTVPLIEQFYVEVQERTKFDVLTRLLNIQS 220

Query: 497 ---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                 F     R + L E           IHG +S   + SV+  FK G+  +L+AT V
Sbjct: 221 PELAIIFGRTKRRVDELAEALNLRGFLAEGIHGDLSQAKRMSVLRKFKEGSIDVLVATDV 280

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----------- 599
              G+D+   + +   +      + +H++ GR GR  +    +    P            
Sbjct: 281 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKEGMAMTFITPREKSYLAVVERT 339

Query: 600 -LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
             SK        L    +G   A  D           I Q+     L    E  D LLE 
Sbjct: 340 TKSKMGKMVPPTLAEALEGQQKAAVD----------KISQAISANNLENYKEAADELLEQ 389

Query: 659 -----ARKDAKHILTQDPDLTSVR 677
                       +LT++PD T V+
Sbjct: 390 HDASDVVAAVLKLLTKEPDDTPVK 413


>gi|328780921|ref|XP_394723.3| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
           mellifera]
          Length = 726

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 137/376 (36%), Gaps = 39/376 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L        ++ I Q   GSGKTL  ++     +          G  
Sbjct: 128 EPTAIQAQGWPIAL----SGRDLVGIAQ--TGSGKTLAYILPATVHINHQPRLSRGDGPI 181

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LAQQ     + +  ++ I    I G  P+  + + LER       I I T 
Sbjct: 182 VLILAPTRELAQQIQSVARDFGSSSCIRNTCIFGGSPKGPQARDLER----GVEICIATP 237

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 238 GRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKE 297

Query: 434 TLVLTSLGDIDISKIT----EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              L      D  +I        A     + V I      E+     +      +   + 
Sbjct: 298 VQALAEDFLSDYIQINIGSLTLAANHNIRQIVEICQEHEKEMKLSNLLREIGKDRGSKMI 357

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +E KK+ +     +   ++      +I+I HG  S  +++ V+  F+NG   +L+AT 
Sbjct: 358 IFVETKKKVD-----DITKAIKREGWPAISI-HGDKSQPERDYVLSEFRNGKTMILVATD 411

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV D   +I  +  +     +H++ GR GR +   +    + P  ++ +   +S
Sbjct: 412 VAARGLDVEDVKYVINFDYPNSSEDYIHRI-GRTGRCQSAGTAYAYFTPNNARQAKELIS 470

Query: 610 VLKNTEDGFLIAEEDL 625
           VL+           DL
Sbjct: 471 VLEEAGQAINPQLADL 486


>gi|322797566|gb|EFZ19610.1| hypothetical protein SINV_13775 [Solenopsis invicta]
          Length = 692

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 138/370 (37%), Gaps = 42/370 (11%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           +L+ + +  PT  Q  AI  I+           I     GSGKTL  L+ M   +     
Sbjct: 44  VLKKLGYEKPTPIQCQAIPAIMSGRD------LIGIAKTGSGKTLAFLLPMFRHILDQPP 97

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  A+IM P   L  Q     KK+T++  +    + G    + +   L+R     
Sbjct: 98  LADGDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAELKR----G 153

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R                  ++  
Sbjct: 154 AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVM------RIMEN 207

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++     +  +  +    +P++  +   + + + +E+  VVL E +K Y 
Sbjct: 208 VRPDRQTVLFSATFPRQMEALARR-ILTRPVEVQVGGRSVVCKDVEQHVVVLEEDQKFYK 266

Query: 488 ICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +   +   ++        + +   +         + S   +HG +   D++S +  FK G
Sbjct: 267 LLEILGHYQDKGSTIIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAG 326

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             KLL+AT+V   G+DV    +++  +  +     +H+  GR GR               
Sbjct: 327 RTKLLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHR-CGRTGRAGNKGYAYTFITSEQ 385

Query: 601 SKNSYTRLSV 610
            + +   L  
Sbjct: 386 ERYAGDILRA 395


>gi|257081095|ref|ZP_05575456.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
 gi|256989125|gb|EEU76427.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
          Length = 513

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 129/346 (37%), Gaps = 35/346 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  Q   I   L           I Q   G+GKT    + M   ++A     Q +
Sbjct: 20  GFEEATPIQSETIPLALAGKDV------IGQAQTGTGKTAAFGLPMLNKIDADNRVIQGL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E + +  ++ +I V+ + G      + + L+     + HI++GT   
Sbjct: 74  VIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKD----RPHIVVGTPGR 129

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--R 433
             D I    L L  V        DE    G  + +   ++Q       LL +AT  P  +
Sbjct: 130 LLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAIK 189

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + +  +   +  KI  K      I    +     ++     +++  +  +   +  +  
Sbjct: 190 NIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPELTIVFGRT- 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+      E        IHG +S   + SV+ SFKNG   +L+AT V   
Sbjct: 249 -------KRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAAR 301

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKGGMSVTFVTPN 346


>gi|255973920|ref|ZP_05424506.1| helicase [Enterococcus faecalis T2]
 gi|255966792|gb|EET97414.1| helicase [Enterococcus faecalis T2]
          Length = 515

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 129/346 (37%), Gaps = 35/346 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  Q   I   L           I Q   G+GKT    + M   ++A     Q +
Sbjct: 20  GFEEATPIQSETIPLALAGKDV------IGQAQTGTGKTAAFGLPMLNKIDADNRVIQGL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E + +  ++ +I V+ + G      + + L+     + HI++GT   
Sbjct: 74  VIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKD----RPHIVVGTPGR 129

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--R 433
             D I    L L  V        DE    G  + +   ++Q       LL +AT  P  +
Sbjct: 130 LLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAIK 189

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + +  +   +  KI  K      I    +     ++     +++  +  +   +  +  
Sbjct: 190 NIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPELTIVFGRT- 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+      E        IHG +S   + SV+ SFKNG   +L+AT V   
Sbjct: 249 -------KRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAAR 301

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKGGMSVTFVTPN 346


>gi|255971301|ref|ZP_05421887.1| helicase [Enterococcus faecalis T1]
 gi|256617719|ref|ZP_05474565.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256761605|ref|ZP_05502185.1| helicase [Enterococcus faecalis T3]
 gi|256854305|ref|ZP_05559669.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256957293|ref|ZP_05561464.1| helicase [Enterococcus faecalis DS5]
 gi|256959973|ref|ZP_05564144.1| helicase [Enterococcus faecalis Merz96]
 gi|256964332|ref|ZP_05568503.1| helicase [Enterococcus faecalis HIP11704]
 gi|257077733|ref|ZP_05572094.1| helicase [Enterococcus faecalis JH1]
 gi|257083763|ref|ZP_05578124.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|257086188|ref|ZP_05580549.1| helicase [Enterococcus faecalis D6]
 gi|257089260|ref|ZP_05583621.1| helicase [Enterococcus faecalis CH188]
 gi|257415413|ref|ZP_05592407.1| helicase [Enterococcus faecalis AR01/DG]
 gi|257418444|ref|ZP_05595438.1| helicase [Enterococcus faecalis T11]
 gi|257421095|ref|ZP_05598085.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294781261|ref|ZP_06746607.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300859873|ref|ZP_07105961.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TUSoD Ef11]
 gi|255962319|gb|EET94795.1| helicase [Enterococcus faecalis T1]
 gi|256597246|gb|EEU16422.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256682856|gb|EEU22551.1| helicase [Enterococcus faecalis T3]
 gi|256709865|gb|EEU24909.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256947789|gb|EEU64421.1| helicase [Enterococcus faecalis DS5]
 gi|256950469|gb|EEU67101.1| helicase [Enterococcus faecalis Merz96]
 gi|256954828|gb|EEU71460.1| helicase [Enterococcus faecalis HIP11704]
 gi|256985763|gb|EEU73065.1| helicase [Enterococcus faecalis JH1]
 gi|256991793|gb|EEU79095.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|256994218|gb|EEU81520.1| helicase [Enterococcus faecalis D6]
 gi|256998072|gb|EEU84592.1| helicase [Enterococcus faecalis CH188]
 gi|257157241|gb|EEU87201.1| helicase [Enterococcus faecalis ARO1/DG]
 gi|257160272|gb|EEU90232.1| helicase [Enterococcus faecalis T11]
 gi|257162919|gb|EEU92879.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294451597|gb|EFG20053.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300850691|gb|EFK78440.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TUSoD Ef11]
 gi|323480025|gb|ADX79464.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
          Length = 515

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 129/346 (37%), Gaps = 35/346 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  Q   I   L           I Q   G+GKT    + M   ++A     Q +
Sbjct: 20  GFEEATPIQSETIPLALAGKDV------IGQAQTGTGKTAAFGLPMLNKIDADNRVIQGL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E + +  ++ +I V+ + G      + + L+     + HI++GT   
Sbjct: 74  VIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKD----RPHIVVGTPGR 129

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--R 433
             D I    L L  V        DE    G  + +   ++Q       LL +AT  P  +
Sbjct: 130 LLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAIK 189

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + +  +   +  KI  K      I    +     ++     +++  +  +   +  +  
Sbjct: 190 NIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPELTIVFGRT- 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+      E        IHG +S   + SV+ SFKNG   +L+AT V   
Sbjct: 249 -------KRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAAR 301

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKGGMSVTFVTPN 346


>gi|193606171|ref|XP_001946134.1| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
           [Acyrthosiphon pisum]
          Length = 641

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 128/351 (36%), Gaps = 37/351 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q+ AI  I+           I     GSGKT   ++ +  ++ +            
Sbjct: 245 PTPIQKYAIPIIMNGKD------MIASAQTGSGKTAAFVLPILNSLISEPSELVFDYNHC 298

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             Q +I++P   LA Q   F  K +  T I    + G     H+R+ +        HII+
Sbjct: 299 EPQCLILSPTRELASQISSFAFKLSNGTSIRCRALYGGTAVYHQREKILS----GVHIIV 354

Query: 381 GTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D +      +  L  +++DE  R          Q   + + ++ +A     TL
Sbjct: 355 ATPGRLIDFVNRGLITFSSLRFIVLDEADRMLDMGFTPAIQCIFSDNTMVSSAERS--TL 412

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++   ID+ +I +       I   +  +    + + +  V +++  K   +   + E 
Sbjct: 413 MFSATLPIDVQQIAKSYLKPDYISVAVGEVGGACKDVTQTFVEVNKFSKKNELVALLNET 472

Query: 496 KES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +          +   +   +           IHG     ++E  +  FK    K+L+AT
Sbjct: 473 NDCQGTIVFVEQKRQADFIAAFLSELNYPTTSIHGDREQPEREKALRDFKTKKMKVLVAT 532

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            V   G+D++  + ++  +        +H++ GR GR       +  Y P 
Sbjct: 533 AVAARGLDIMGVTTVVNFDLPKTIEEYVHRI-GRTGRLGNSGRAVSFYDPD 582


>gi|167571168|ref|ZP_02364042.1| ATP-dependent DNA helicase RecG [Burkholderia oklahomensis C6786]
          Length = 772

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 18/244 (7%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+    I    G +   + 
Sbjct: 48  KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPVRELLPGEIAQTEGVVFD-NE 100

Query: 82  FQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D +  E+ L F       +K +   G+++ V G ++     + MVH
Sbjct: 101 IAYRPRRQLLVKLRDDSDAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEMVH 159

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P      +       +  VY    G+S    +K I  AL+R P LPE +  ++    L  
Sbjct: 160 PTVKVVEADAPLPQALTPVYPSTAGVSQAYLRKAIDNALTRTP-LPELLPPEVARAHLAP 218

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 219 LDVPPLADAVRLLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 278

Query: 253 IPIN 256
             + 
Sbjct: 279 PAMP 282


>gi|118444591|ref|YP_877094.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118135047|gb|ABK62091.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 528

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 135/370 (36%), Gaps = 44/370 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  QE AI  IL           I Q   G+GKT    I     ++      Q +++ 
Sbjct: 26  EPSPIQEKAIPFILSGKD------IIGQAQTGTGKTAAFGIPALDTIDLNNRNLQIMVLC 79

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I K  +    + V  I G  P   + KAL+R       I+IGT     
Sbjct: 80  PTRELAIQATQEITKLGKYKKGLNVLAIYGGQPIDRQIKALKR----GVQIVIGTPGRVI 135

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D I    L        +L   DE    G +  +           ++ +     +T++ ++
Sbjct: 136 DHINRKTLKTDNIKMVVLDEADEMLDMGFRDDI---------ETIIQSVPENRQTILFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---- 495
                I ++++K   +     V+     +   IE+  + + E  K   +   I+ +    
Sbjct: 187 TMPKAIVELSKKYQTKAEFIKVVHRQLTVPN-IEQRYIEVKENFKIEVLSRLIDMRNPKL 245

Query: 496 ---KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  + V E  + L      +  + HG M    ++ VM  F+NGT ++L+AT V  
Sbjct: 246 SVIFCNTKKRVDEVVSELQSRGYFAEGL-HGDMKQPQRDRVMSKFRNGTIEILVATDVAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GIDV D   +   +        +H++ GR GR                K       + +
Sbjct: 305 RGIDVDDVEAVFNYDLPQDEEYYVHRI-GRTGRAGRSGIAFTFVA---GKAMRKLRDIER 360

Query: 613 NTEDGFLIAE 622
            T+     AE
Sbjct: 361 YTKTKIKRAE 370


>gi|156546663|ref|XP_001603634.1| PREDICTED: similar to ENSANGP00000016791 [Nasonia vitripennis]
          Length = 1035

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/410 (18%), Positives = 152/410 (37%), Gaps = 44/410 (10%)

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI--LRNIPFS-PTKSQESAIKDIL 285
              EL   ++  + ++ +   +        G   +++  LR + +  PT  Q  AI  I+
Sbjct: 346 EEVELYKEELEGIRVKGKNCPKPIKSWAQCGVSKKELDVLRKLGYEKPTPIQCQAIPAIM 405

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQH 337
                      I     GSGKT+  L+ M   +          G  A+IM P   L  Q 
Sbjct: 406 SGRD------LIGIAKTGSGKTIAFLLPMFRHILDQPPLADGDGPIALIMTPTRELCMQI 459

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            +  KK+T++  +    + G    + +   L+R     A II+ T     D +       
Sbjct: 460 GKDSKKFTKSLGLSHVCVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAANNGRV 515

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
               ++  V++DE  R                  ++    P  +T++ ++     +  + 
Sbjct: 516 TNLRRVTYVVLDEADRMFDMGFEPQVM------RIMENVRPDRQTVLFSATFPRQMEALA 569

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----ESNFRSVVE 505
            +    KP++  +   + + + +E+  VVL +  K   +   +   +       F    E
Sbjct: 570 RR-ILTKPVEVQVGGRSVVCKDVEQHVVVLDDDLKFRKLLEILGHFQDKGSAIIFVDKQE 628

Query: 506 RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             ++L +       S   +HG +   D++S +  FK G  KLL+AT+V   G+DV    +
Sbjct: 629 NADTLLKDLMKASHSCMSLHGGIDQCDRDSTIMDFKAGRVKLLVATSVAARGLDVKSLVL 688

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           ++  +  +     +H+  GR GR            P   + S   +   +
Sbjct: 689 VVNYDCPNHYEDYVHR-CGRTGRAGNKGYAYTFITPDQERYSGDIVRAFE 737


>gi|157819755|ref|NP_001102328.1| hypothetical protein LOC364073 [Rattus norvegicus]
 gi|149040979|gb|EDL94936.1| rCG20177 [Rattus norvegicus]
          Length = 659

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + +   G          
Sbjct: 201 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKE 254

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 255 NGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 313

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 314 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 370

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 371 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADK-RSF 428

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K   I   +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 429 LLDLLNATGKDSLILVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 482

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 483 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 541

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 542 FFNERNINITKDLLDLLVE 560


>gi|145601979|ref|XP_001403327.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|152013478|sp|A4QSS5|DBP2_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP2
 gi|145010431|gb|EDJ95087.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 548

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 138/371 (37%), Gaps = 42/371 (11%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------ 320
           +  P +PT  Q       L           +   + GSGKTL   +     + A      
Sbjct: 143 QGFP-APTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAP 195

Query: 321 --GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G   +I+AP   LA Q    I K+ ++++I    + G +P+  + + L R       +
Sbjct: 196 GDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSR----GVEV 251

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTA 428
            I T     D ++  K        L+L   D     G   Q R  + Q       L+ +A
Sbjct: 252 CIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSA 311

Query: 429 TPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEG 482
           T     R +    L D     I           T I+ +     + D +I  ++ V+   
Sbjct: 312 TWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHMEKVMDGK 371

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                I   +  K     R   E    L +    +++I HG     +++ V+D FK G  
Sbjct: 372 DSKNKILIFVGTK-----RVADEITRFLRQDGWPALSI-HGDKQQNERDWVLDQFKTGKS 425

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +++AT V   GIDV + + ++  +  +     +H++ GR GR     + I  +    SK
Sbjct: 426 PIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRI-GRTGRAGAKGTAITFFTTENSK 484

Query: 603 NSYTRLSVLKN 613
            +   L VL+ 
Sbjct: 485 QARDLLGVLQE 495


>gi|134297916|ref|YP_001111412.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134050616|gb|ABO48587.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 460

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/340 (21%), Positives = 121/340 (35%), Gaps = 30/340 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  Q+  I  +L           I Q   G+GKTL  ++ +   ++A     QA+I+ 
Sbjct: 24  EPTPIQKQTIPILLSGKDV------IAQAQTGTGKTLAFVLPILEKIDAKKSYIQALILT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +KK        V  + G      + K L+    G  HI+I T     D
Sbjct: 78  PTRELALQITTEVKKLASKMDANVLAVYGGQDVERQNKRLQ----GNTHIVIATPGRLLD 133

Query: 389 SIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            +            L+L   D+    G   +    + Q +     +L +AT       L+
Sbjct: 134 HLGRGTIRLTGVSMLVLDEADQMLHMGFLNEVEKIIHQTSAKRQTMLFSATMPAEIRALS 193

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                    I  +  G    KT  I +   D   +     L +  + Y        K   
Sbjct: 194 VKYMRKPMDIHVRGTGITLEKTKQIAVETTDRTKQETLRKLLDEYQPYLGIIFCRTK--- 250

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             R        L  H  +S   +HG +S   +E VM  F+    ++L+AT V   G+DV 
Sbjct: 251 --RRASALNEMLLAHGYNS-DELHGDLSQAKREQVMKRFREAKLQILVATDVAARGLDVE 307

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + +   +      + +H++ GR GR  +    +    P
Sbjct: 308 GVTHVFNYDIPQDVESYIHRI-GRTGRAGDTGLAVTFVSP 346


>gi|223649022|gb|ACN11269.1| Probable ATP-dependent RNA helicase DDX5 [Salmo salar]
          Length = 614

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/368 (20%), Positives = 142/368 (38%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L        M+ I Q   GSGKTL  L+     +          G  
Sbjct: 116 EPTPIQAQGWPLAL----SGKDMVGIAQ--TGSGKTLSYLLPAIVHINHQPFLERGDGPI 169

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +   +Y + +++    + G  P+  + + L+R       I I T 
Sbjct: 170 CLVLAPTRELAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDR----GVEICIATP 225

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 226 GRLIDFLEAGKTNMRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 285

Query: 434 TLVLTSLGDIDISKIT----EKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYW 487
              L      D  +I     +  A    ++ V +     + D+++  L+ ++SE +    
Sbjct: 286 VRQLAEDFLKDYVQINVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTI 345

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I  + +       R   E    +      ++ I HG  S  +++ V++ FK G   +LIA
Sbjct: 346 IFTETK-------RRCDEITRRMRRDGWPAMGI-HGDKSQQERDWVLNEFKFGKAPILIA 397

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +  +     +H++ GR  R ++  +    + P   + +   
Sbjct: 398 TDVASRGLDVEDVKFVINFDYPNNSEDYIHRI-GRTARSQKTGTAYTFFTPNNMRQASDL 456

Query: 608 LSVLKNTE 615
           ++VL+   
Sbjct: 457 VAVLREAN 464


>gi|219521150|gb|AAI72016.1| Ddx3x protein [Mus musculus]
          Length = 661

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 145/379 (38%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + A G          
Sbjct: 202 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKE 255

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 256 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLER- 314

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 315 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 371

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  ID+    
Sbjct: 372 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDK-RSF 429

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 430 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 483

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 484 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 542

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 543 FFNERNINITKDLLDLLVE 561


>gi|254466325|ref|ZP_05079736.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
 gi|206687233|gb|EDZ47715.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
          Length = 467

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 139/369 (37%), Gaps = 46/369 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+          +     G+GKT    + M   +  G       +++
Sbjct: 24  TPTPIQAGAIPPALEGRDV------LGIAQTGTGKTASFTLPMITLLARGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y ++ ++   ++ G +    +   +++       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDALIDK----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     ++VDE  R      +   ++       + + TP   +TL  ++
Sbjct: 134 LLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIER-------IFSLTPFTRQTLFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL------SEGKKAYWICPQIE 493
               +I +IT       P +  +       E IE+  V +       EG +   +   + 
Sbjct: 187 TMAPEIERITNTFLSG-PARIEVARQATASETIEQAVVQVKPSRRDREGSEKRTVLRALI 245

Query: 494 EKK---------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           + +           N ++ V+      + +    A IHG +    +   +DSF+ G+ ++
Sbjct: 246 DGEGDKLTNGIIFCNRKTDVDICAKSLKKYGYDAAAIHGDLDQSQRTRTLDSFREGSLRI 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+A+ V   G+DV   S +   +        +H++ GR GR       I +  P   K  
Sbjct: 306 LVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRI-GRTGRAGREGKAITICTPRDEKAL 364

Query: 605 YTRLSVLKN 613
                +++ 
Sbjct: 365 DAVEKLIQK 373


>gi|149181312|ref|ZP_01859810.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
 gi|148851037|gb|EDL65189.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
          Length = 481

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 145/378 (38%), Gaps = 40/378 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  Q+ L  + +  PT+ Q   I   L++         +++   GSGKT    I ++  
Sbjct: 12  SEEIQRALAVLKYETPTEVQNKVIPSALENQD------LVVKAQTGSGKTAAFGIPVSDM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           +E      QA+I+ P   LA Q  E I    +  +I    + G  P + ++  L++    
Sbjct: 66  IEWEEKKPQALILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFSKQKDELKQ---- 121

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVL 424
           + H+++GT     D I+   L L  +        DE    G    +   + +  +    +
Sbjct: 122 KTHVVVGTPGRVMDHIERETLDLNQIKYLIIDEADEMLNRGFIDEVEAIIKELPSNRVTM 181

Query: 425 LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           + +AT       L    + +    +I         I+  +I +   +++     + + E 
Sbjct: 182 VFSATLPKDVENLCHKYMNNPLQIEIESTGVTADTIEHSLIEVREEEKISLLKDITVVEN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I  + +E         V+   S  E        +HG +   D+ SVM+ FK G  
Sbjct: 242 PDSCLIFCRTKEN--------VDTVYSELEKAGYPCERLHGGLEQEDRFSVMEGFKLGNF 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + L+AT V   GID+ + +++I  +      + +H+  GR GR       I L  P   K
Sbjct: 294 RYLVATDVAARGIDIDNVTLVINYDVPMEKESYVHR-TGRTGRAGNKGKAITLSTPYEGK 352

Query: 603 NSYTRLSVLKNTEDGFLI 620
                   +     GF +
Sbjct: 353 FIKAIERYI-----GFEL 365


>gi|322695045|gb|EFY86860.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Metarhizium
           acridum CQMa 102]
          Length = 1161

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 146/393 (37%), Gaps = 47/393 (11%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ++ N+ +  PT  Q  AI  ++           +     GSGKT+  L+ M   +     
Sbjct: 548 VIDNLGYEKPTTIQMQAIPTLMSGRDV------VGVAKTGSGKTVAFLLPMFRHIMDQPP 601

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +IM P   LA Q +   K + ++  +      G  P   +   L+R     
Sbjct: 602 IKDTDGPIGLIMTPTRELATQIHRDCKPFLKSMGLRAVCAYGGAPIRDQIAELKR----G 657

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K      +   
Sbjct: 658 AEIIVCTPGRMIDLLAANQGRVTNLRRVTYVVLDEADRMFDMGFEPQVMK------IFAG 711

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++     I  +T+K   + P++  +   + + + IE++  V  E  K + 
Sbjct: 712 MRPDKQTILFSATMPRIIDSLTKK-VLKSPVEITVGGRSVVAKEIEQIVEVREESTKFFR 770

Query: 488 ICPQIEEKKESNFR-------SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
           +   + E  + +            E+ + L +           IHG    +D++S +  F
Sbjct: 771 VLELLGELYDRDEDARALIFVDRQEKADDLLKELMVKGYPCMSIHGGKDQVDRDSTISDF 830

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+AT+V   G+DV    ++I  +A +     +H+  GR GR       +    
Sbjct: 831 KKGVVPLLVATSVAARGLDVKQLKLVINYDAPNHLEDYVHR-AGRTGRAGNTGVAVTFVT 889

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           P     +      L+ +E    + E   + RK 
Sbjct: 890 PDQENCAPGIAKALEQSEQ--PVPERLNEMRKA 920


>gi|295702421|ref|YP_003595496.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294800080|gb|ADF37146.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 503

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 162/442 (36%), Gaps = 42/442 (9%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   K +  + F   T  Q   I   L+          I Q   G+GKT    I +   
Sbjct: 10  SQQLNKAVSKMGFEEATPIQSETIPLALEGHD------LIGQAQTGTGKTAAFGIPLIEK 63

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           V+      Q +I+AP   LA Q  E + K  Q  ++ V  I G    + + +AL++    
Sbjct: 64  VDVNVDAIQGLIIAPTRELAVQVSEELYKIGQTKRVRVLSIYGGQDISRQIRALKK---- 119

Query: 375 QAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
             HII+GT     D I    L        IL   DE    G  + +   L+        L
Sbjct: 120 HPHIIVGTPGRMLDHINRRTLRLQDVHTVILDEADEMLNMGFIEDIEKILSNVPENHQTL 179

Query: 425 LMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT P P R +    + +  + K+  K      I    + +    +     +++  + 
Sbjct: 180 LFSATMPTPIRRIAEKFMNEPKVVKVQAKEVTMPNITQYYLEVQEKRKFDILTRLLDMQS 239

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            +   I  +         +  V+  +        S   IHG ++   + SV+  FK G+ 
Sbjct: 240 PELAIIFGRT--------KRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSI 291

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+   + +   +      + +H++ GR GR  ++ + +    P  + 
Sbjct: 292 DVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKMGAAMTFVTPRETG 350

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK--QSGMPKFLIAQPELHDSLLEI-- 658
             +      K   +       D     +  I   K  +S     L    +L + LLE   
Sbjct: 351 QLHNIERTTKRKMERLTPPTLDEAMEGQQRIAADKLTESVTQGNLSYYKQLAEELLEEHD 410

Query: 659 ---ARKDAKHILTQDPDLTSVR 677
                  A  + T++P+ + ++
Sbjct: 411 SVSLVAAAIKLFTKEPNESPIQ 432


>gi|213405989|ref|XP_002173766.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001813|gb|EEB07473.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces japonicus
           yFS275]
          Length = 1056

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 86/452 (19%), Positives = 158/452 (34%), Gaps = 51/452 (11%)

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI--LRNIPFS-PT 274
            E     +  L   + L   +  + +R     +     +  G   Q +  +R++ F  P+
Sbjct: 424 VEPEELKKLSLEEVDELRLSLGGIKIRGIDCPKPVTSWSQCGLSVQTLSVIRSLGFEEPS 483

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVI 326
             Q  AI  I            I     GSGKT+  L+ M   +          G  AVI
Sbjct: 484 AIQAQAIPAITAGRDV------IGVAKTGSGKTIAFLLPMFRHIMDQRPLRNGEGPVAVI 537

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           M P   LA Q +   K + +   +      G  P   +   L+R     A I++ T    
Sbjct: 538 MTPTRELAVQIFRECKPFAKALDLRATCAYGGAPIKDQIAELKR----GAEIVVCTPGRM 593

Query: 387 QDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            D +          ++   V++DE  R           +            P  + ++ +
Sbjct: 594 IDVLNANSGRVTNLHRCTYVVLDEADRMFDLGFEPQVMRILNNIR------PDRQVVLFS 647

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     +  +  K   +KPI+  +   + +   +E+L  V SE  K   +   + E   +
Sbjct: 648 ATFPRAMEALARK-VLKKPIEITVGGRSVVAAEVEQLVEVRSEESKFPRLLELLGELYNT 706

Query: 499 NFR-------SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                        E  ++L             IHG     D++S +  +K G   +LIAT
Sbjct: 707 QPDVRTLVFVDRHESADALLSQLMKRGYSCNSIHGGKDQHDRDSTISDYKMGIFDVLIAT 766

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           +V   G+DV    +++  +  +     +H++ GR GR       +    P  S+ +    
Sbjct: 767 SVAARGLDVKSLQLVVNYDCPNHMEDYVHRV-GRTGRAGHTGVAVTFVTPDQSRYAVGIA 825

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
             LK ++    +  ++L      E L   +SG
Sbjct: 826 KALKMSKQPVPLELQNL----ANEFLKNVKSG 853


>gi|14861844|ref|NP_149068.1| putative ATP-dependent RNA helicase Pl10 [Mus musculus]
 gi|130256|sp|P16381|DDX3L_MOUSE RecName: Full=Putative ATP-dependent RNA helicase Pl10
 gi|200389|gb|AAA39942.1| PL10 protein [Mus musculus]
 gi|26325502|dbj|BAC26505.1| unnamed protein product [Mus musculus]
 gi|148681106|gb|EDL13053.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
 gi|223460348|gb|AAI39288.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
 gi|223461116|gb|AAI39287.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
          Length = 660

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + +   G          
Sbjct: 202 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKE 255

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 256 NGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 314

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 315 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 371

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 372 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADK-RSF 429

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K   I   +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 430 LLDLLNATGKDSLILVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 483

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 484 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 542

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 543 FFNERNINITKDLLDLLVE 561


>gi|71987143|ref|NP_001022623.1| INitiation Factor family member (inf-1) [Caenorhabditis elegans]
 gi|124217|sp|P27639|IF4A_CAEEL RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Initiation factor 1
 gi|6700|emb|CAA78102.1| unnamed protein product [Caenorhabditis elegans]
 gi|532818|gb|AAA21170.1| Initiation factor protein 1, isoform a, confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 402

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 139/376 (36%), Gaps = 34/376 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           +    F  P+  Q+ AI               I Q   G+GKT    +++   ++     
Sbjct: 44  IYGFGFEKPSAIQKRAIVPCTTGKDV------IAQAQSGTGKTATFSVSILQRIDHEDPH 97

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA++MAP   LAQQ  + +    +   + +    G       ++ LE       H+++G
Sbjct: 98  VQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEA----GIHVVVG 153

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPI 431
           T     D I    L        +L   DE    G + ++            V+L++AT  
Sbjct: 154 TPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQDVQVVLLSATMP 213

Query: 432 PRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              L +T+    +  +I  K      + I+   I + + +   + L          Y + 
Sbjct: 214 SEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCL-------CDLYNVV 266

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
              +     N R  V+           +++ +HG M   +++++M  F++G+ ++LI T 
Sbjct: 267 NVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTD 326

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           ++  GIDV   S++I  +        +H++ GR GR       I       ++      S
Sbjct: 327 ILARGIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTENDARQLKEIES 385

Query: 610 VLKNTEDGFLIAEEDL 625
                 +    +  DL
Sbjct: 386 YYTTQIEEMPESIADL 401


>gi|164657065|ref|XP_001729659.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966]
 gi|159103552|gb|EDP42445.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966]
          Length = 560

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 145/385 (37%), Gaps = 45/385 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           +  + F  P+  Q  A    L           +   + GSGKT+   +     ++A    
Sbjct: 150 INKLGFTEPSAIQSQAWPLALSGRD------LVAIAETGSGKTIGFALPSILHIKAQAPL 203

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G  A+I+AP   LA Q     +++    ++    + G +P+  + ++L+R     A
Sbjct: 204 QYGDGPIALILAPTRELAVQIQNECQRFGSACRVRTTSVYGGVPKGQQIRSLQR----GA 259

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLM 426
            I+I T     D ++  K        L++   D     G + +++    Q       L+ 
Sbjct: 260 EIVIATPGRLIDMMEIGKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVEQIRPDRQTLMF 319

Query: 427 TATPIPRTLVLTSLGDIDISKI----TEKPAGR--KPIKTVIIPINRIDEVIERLKVVLS 480
           +AT       + S    D  ++     E  A    K +  V    ++   +I+ L+ +  
Sbjct: 320 SATWPKEVQRMASDFLNDYVQVNIGSMELAANHNVKQVIEVCTEFDKRGRLIKHLEHISQ 379

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           E  K                R+  +    L +     +AI HG     +++ V+  FK+G
Sbjct: 380 ENGKVIIF--------TGTKRAADDLTKFLRQDGWPGLAI-HGDKQQDERDWVLREFKSG 430

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +++AT V   G+DV D S +I  +        +HQ+ GR GR       I  +    
Sbjct: 431 NSPIMVATAVASRGLDVKDISYVINSDFPTNTEDYIHQI-GRTGRAGRKGVAITFFTSEN 489

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDL 625
           SK++   + +L+          +D+
Sbjct: 490 SKSARDLVGILREANQEVPPELQDM 514


>gi|221134107|ref|ZP_03560412.1| DEAD/DEAH box helicase domain-containing protein [Glaciecola sp.
           HTCC2999]
          Length = 442

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 132/347 (38%), Gaps = 37/347 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            P+  Q+ AI  +L           +     G+GKT    + +   +            +
Sbjct: 25  QPSPIQQQAIGPVLDGQDV------MAAAQTGTGKTGAFALPIVNLLSETSKRPSPNNIK 78

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  E +K   Q+TQ+   ++ G +    + + L R       I+I T 
Sbjct: 79  ALILTPTRELAAQVAESVKACAQHTQLRSMVVFGGVSINPQMQGLRR----GCDILIATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++++ +L ++++DE  R      +   ++       +M   P  R  +L 
Sbjct: 135 GRLLDLHQQNAVKFSQLEILVLDEADRMLDMGFIHDIKR-------IMKLIPAKRQTLLF 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +   K   ++PI+  + P N    ++++L V   +  K   +   I++    
Sbjct: 188 SATFSDPIRELAKQFTQEPIEISVTPKNSTTPLVKQLLVHAEKSSKTTLLIKLIKDNDWQ 247

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +    R      +   + A IHG  S   +   +  FK+G  ++L+AT +  
Sbjct: 248 QVLVFTRTKHGANRIAQKLGNKNITAAAIHGNKSQGARTKALADFKSGDVRVLVATDIAA 307

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            GID+     +I  +  H     +H++ GR GR       +      
Sbjct: 308 RGIDIDQLPNVINYDLPHVPEDYVHRI-GRTGRAGATGHAVSFATNE 353


>gi|328768329|gb|EGF78376.1| eIF4AIII protein [Batrachochytrium dendrobatidis JAM81]
          Length = 445

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/346 (21%), Positives = 132/346 (38%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ AI  IL+          I Q   G+GKT    I++   ++      QA+I++
Sbjct: 62  KPSAIQQRAIAPILKGRDV------IAQAQSGTGKTATFSISVLQTIDTTRRQTQALILS 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+   HGQ H++ GT     D
Sbjct: 116 PTRELATQIQSVVLALGDYMNVQCHACIGGTSIGEDIRKLD---HGQ-HVVSGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        IL   DE    G ++++    +            P  + ++L++ 
Sbjct: 172 MIKRRNLQTRDIKMLILDEADEMLSKGFKEQIYDVYRYLP---------PSTQVVILSAT 222

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E I++  V +  E  K   +C   +      
Sbjct: 223 LPHDVLDMTSKFMT-DPVRVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQ 281

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           ++A +HG M   +++++M  F++G  ++LI T V   
Sbjct: 282 AVIFCNTRRKVDWLTEKMREANFTVAAMHGEMPQKERDAIMQEFRSGASRVLITTDVWAR 341

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 342 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVKND 386


>gi|27366679|ref|NP_762206.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|37676391|ref|NP_936787.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|320158571|ref|YP_004190949.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|27358245|gb|AAO07196.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|37200933|dbj|BAC96757.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|319933883|gb|ADV88746.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 418

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/389 (19%), Positives = 147/389 (37%), Gaps = 54/389 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----- 319
           L  + F +PT  Q+ AI  +LQ          +     G+GKT    + +   +      
Sbjct: 18  LSQLGFNTPTPIQQQAIPHLLQGRDV------LAAAQTGTGKTAAYGLPLIQMLSRQSRE 71

Query: 320 ----AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+AP   LAQQ ++ +K+Y Q+T++ +  + G      +++ L +     
Sbjct: 72  ETAPKHPRALILAPTRELAQQVFDNLKQYAQHTELAIVTVYGGTSIRVQQEQLAK----G 127

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGV--QQRLKLTQKATAPHVLL 425
             I+I T     D +        Q   L+L   D     G     +  + +       LL
Sbjct: 128 VDILIATPGRLLDHLFTKKTSLNQLQMLVLDEADRMLDMGFLPDIQRIMKRMPEERQTLL 187

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT   R   L      +  ++    A      +K ++ P+++  +      ++ S   
Sbjct: 188 FSATFETRVKALAYRLMKEPVEVQVAAANSTADTVKQMVYPVDKKRKSELLAYLIGSRNW 247

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +   +            +   +   S  +      A I+G  S   ++  +D FK+G  +
Sbjct: 248 QQVLVFT--------KTKQGSDALVSELKLDGIKAASINGDKSQGARQKALDDFKSGKVR 299

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
            LIAT V   G+D+     ++  +  +     +H++ GR GR  +    +      +S++
Sbjct: 300 ALIATDVAARGLDIAQLEQVVNFDMPYKAEDYVHRI-GRTGRAGQTGLAVSF----MSRD 354

Query: 604 SYTRLSVLKNTED---------GFLIAEE 623
               L  ++N  D         GF  +E+
Sbjct: 355 EEYLLQAIENLLDTRLPQEWLAGFEPSEK 383


>gi|127511538|ref|YP_001092735.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126636833|gb|ABO22476.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 491

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 134/346 (38%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G +A       
Sbjct: 23  TPSPIQAQAIPAVLSGKDV------MAAAQTGTGKTAGFTLPLLELLSQGPRARSKQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +  Y Q+  +   ++ G +  + +   L+R       I++ T  
Sbjct: 77  LVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQISQLKR----GVDILVATPG 132

Query: 385 LF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
                  QD++ + +L  +++DE  R      +   +K      +L    P  + L+ ++
Sbjct: 133 RLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKK------ILAILPPKRQNLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I  +  K     P++  + P N     +++L   + + KK+  +   I++     
Sbjct: 187 TFSDEIRTLA-KGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKLIQQGDWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E    + A IHG  S   +   + +FK+G  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+     ++  +  +     +H++ GR GR       + L    
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGADGKAVSLVSDE 350


>gi|331089330|ref|ZP_08338231.1| hypothetical protein HMPREF1025_01814 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330405511|gb|EGG85043.1| hypothetical protein HMPREF1025_01814 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 383

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 126/233 (54%), Gaps = 15/233 (6%)

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           ++ +G  D+S + E P  R PI+T ++  N  + V E +   L+   + Y++  ++ +  
Sbjct: 1   MSLIGIRDMSVLEEAPNERMPIQTYVMEYND-EMVREAITRELARDGQVYYVYNRVNDIA 59

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           +        R  SL     +++A  HG+M + + E +M  F NG   +L++TT+IE G+D
Sbjct: 60  DVAG-----RIQSLVPD--ANVAFAHGQMKERELEDIMYDFINGDIDVLVSTTIIETGLD 112

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNT 614
           + +A+ +II++A+ FGL+QL+QLRGRVGR   ++   LLY     L + +  RLS ++  
Sbjct: 113 IPNANTMIIQDADRFGLSQLYQLRGRVGRSNRMAYAFLLYQRDKLLKEVAEKRLSAIREF 172

Query: 615 ED---GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
            D   G  IA  DL+ R  G +LG  QSG  + +     L+  +L  A +  K
Sbjct: 173 TDLGSGIKIAMRDLEIRGAGNLLGEAQSGHMEAVGYD--LYCKMLNEAVRQLK 223


>gi|315037505|ref|YP_004031073.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1112]
 gi|325955969|ref|YP_004286579.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           30SC]
 gi|312275638|gb|ADQ58278.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1112]
 gi|325332534|gb|ADZ06442.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           30SC]
 gi|327182801|gb|AEA31248.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1118]
          Length = 497

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 131/348 (37%), Gaps = 38/348 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE  I   L           I Q   G+GKT    + +   ++      QA+
Sbjct: 20  GFEEATPIQEQTIPLALAGKDV------IGQAQTGTGKTAAFGLPILQTIDKKEKAIQAI 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E + +  ++    V+++ G      + ++L+   H    I++GT   
Sbjct: 74  IIEPTRELAIQTQEELFRLGRDEHTHVQVVYGGADIGRQIRSLK---HHVPSILVGTPGR 130

Query: 386 FQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D ++           ++L   DE    G  Q +           +L  A    +TL+ 
Sbjct: 131 LLDHLKRGTINLDKVKAVVLDEADEMLDMGFIQDI---------ESILKYAKNRKQTLLF 181

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I +I EK      I   I       ++I++  V   E +K   +C  I+ +  
Sbjct: 182 SATMPKPILRIGEKFMNHPKIVQ-IKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGP 240

Query: 497 --ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L     +     A IHG +S   + +V+  F+ G   +L+AT V 
Sbjct: 241 DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVA 300

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 301 ARGLDISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGQNGISVTFVTPN 347


>gi|224060117|ref|XP_002300045.1| predicted protein [Populus trichocarpa]
 gi|222847303|gb|EEE84850.1| predicted protein [Populus trichocarpa]
          Length = 791

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/398 (19%), Positives = 146/398 (36%), Gaps = 47/398 (11%)

Query: 254 PINVEGKIAQKILRNI--PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
                G  ++ +   +   FS PT  Q  +    LQ          +     GSGKTL  
Sbjct: 166 SFETTGFPSEILKEVLNAGFSAPTPIQAQSWPIALQSRD------IVAVAKTGSGKTLGY 219

Query: 311 LIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           LI     ++        G   ++++P   LA Q      K+ ++++     + G  P+  
Sbjct: 220 LIPGFIHLKRSCNDPRLGPTVLVLSPTRELATQIQVEAVKFGKSSRFSCTCLYGGAPKGP 279

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLK 413
           + K L+R     A I++ T     D ++  +        L+L   D     G   Q R  
Sbjct: 280 QLKELDR----GADIVVATPGRLNDILEMRRVSLSQVSYLVLDEADRMLDMGFEPQIRKI 335

Query: 414 LTQKATAPHVLLMTATPIPRTL-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINR 467
           + +       L+ TAT           +L +   ++I  + E  A +   + V ++    
Sbjct: 336 VKEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQYVELLAPLE 395

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
               +E++      G K    C        S  +   +   +L   F +  A IHG  S 
Sbjct: 396 KHRRLEQILRSQESGSKIIIFC--------STKKMCDQLSRNLTRQFGA--AAIHGDKSQ 445

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++ V+  F+ G   +L+AT V   G+D+ D  ++I  +        +H++ GR GR  
Sbjct: 446 SERDYVLSQFRTGRSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRI-GRTGRAG 504

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
                   +    +K++   + VL+           D+
Sbjct: 505 ATGVAYTFFGDQDAKHASDLIKVLEGANQQVPPEIRDM 542


>gi|159154994|gb|AAI54494.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/366 (21%), Positives = 135/366 (36%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L        M+ I Q   GSGKTL  L+     +          G  
Sbjct: 117 EPTAIQAQGFPLAL----SGRDMVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPI 170

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +    Y ++++I    + G  P+  + + LER       I I T 
Sbjct: 171 CLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLER----GVEICIATP 226

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 227 GRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 286

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I   E  A      I  V +   + +++I+ ++ +++E +    
Sbjct: 287 VRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTI 346

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            +   +               IHG  S  +++ V+  F++G   +LIA
Sbjct: 347 IFV--------ETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIA 398

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +  +     +H++ GR  R     +    + P   + +   
Sbjct: 399 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLRQARDL 457

Query: 608 LSVLKN 613
           + VL+ 
Sbjct: 458 VRVLEE 463


>gi|150390823|ref|YP_001320872.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950685|gb|ABR49213.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 529

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/364 (22%), Positives = 135/364 (37%), Gaps = 36/364 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L+ + F  PT  Q  AI  +            I Q   G+GKT    I M   V      
Sbjct: 19  LKELGFEVPTPIQVQAIPHLKMGKD------IIGQAQTGTGKTAAFGIPMIERVNPKNKA 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +IMAP   L+ Q  + I+K++ +   +    I G  P + + KAL+R       II+
Sbjct: 73  VQILIMAPTRELSVQVADEIQKFSNHVIGVKTLAIYGGQPISTQIKALKR----GVQIIV 128

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D I    L L  V        D+    G Q+ +   L +  T     + +AT 
Sbjct: 129 GTPGRILDHINRKTLKLGEVIGVVLDEADQMLDMGFQEDMEAILKETPTERQTAMFSATI 188

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +    +   +   + +K      I      +   ++V    +++  +      I
Sbjct: 189 SREIERIAQKYMKQPEKIMVAQKALTVPQISQYYFEVKPHEKVEALCRILDMDKTDLGII 248

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +         +  V+      ++   S A IHG +    ++ VM  F+N T  LL+AT
Sbjct: 249 FCRT--------KRSVDELTEKLQNRGYSAAAIHGDLKQTQRDRVMKKFRNRTIDLLVAT 300

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV D  +++  +        +H++ GR GR  +      L      +      
Sbjct: 301 DVAARGIDVNDVEMVMNYDIPEDFEYYVHRI-GRTGRAGKEGVAYTLATGKQMRTLKALE 359

Query: 609 SVLK 612
           S +K
Sbjct: 360 SYIK 363


>gi|322785598|gb|EFZ12253.1| hypothetical protein SINV_05205 [Solenopsis invicta]
          Length = 725

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 83/363 (22%), Positives = 139/363 (38%), Gaps = 38/363 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L        ++ I Q   GSGKTL  ++     +          G  
Sbjct: 131 EPTAIQAQGWPIAL----SGRDLVGIAQ--TGSGKTLAYILPAIVHINNQPRLSRGDGPI 184

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LAQQ     + +  ++ I    I G  P+  + + LER       I I T 
Sbjct: 185 VLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQARDLER----GVEICIATP 240

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 241 GRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKE 300

Query: 434 T--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE-GKKAYWICP 490
              L    L D     I             II I +  E   +L  +L E G +   +  
Sbjct: 301 VQALAEDFLTDYIQINIGSLTLAANHNIRQIIEICQEHEKETKLSQLLREIGAERSKMII 360

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +E KK+ +     +   ++      +I+I HG  S  +++ V+  F+NG   +L+AT V
Sbjct: 361 FVETKKKVD-----DITKTIKRDGWPAISI-HGDKSQPERDYVLSEFRNGKTMILVATDV 414

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D   +I  +  +     +H++ GR GR +   +    + P  ++ +   ++V
Sbjct: 415 AARGLDVEDVKYVINFDYPNSSEDYIHRI-GRTGRCQSAGTAYAYFTPNNARQAKELIAV 473

Query: 611 LKN 613
           L+ 
Sbjct: 474 LEE 476


>gi|322384200|ref|ZP_08057910.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321151092|gb|EFX44409.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 486

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/341 (21%), Positives = 132/341 (38%), Gaps = 25/341 (7%)

Query: 269 IPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---A 324
           + F   T  Q   I   LQ          I Q   G+GKT    + +   ++       A
Sbjct: 1   MGFEEATPIQAKTIPLALQGHD------LIGQAQTGTGKTAAFGVPLINKIDTAADKIVA 54

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++M P   LA Q  E I K  +   I    I G      + +AL++    +  IIIGT  
Sbjct: 55  LVMCPTRELAIQVAEEISKLGRFKGIRSLPIYGGQDIVKQIRALKK----KPQIIIGTPG 110

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDI 443
              D I    + L  V+        + L +        +L  +  P  R T++ ++    
Sbjct: 111 RLLDHINRKTIKLEGVETVVLDEADEMLDMGFMDDIQSIL--SQVPEERHTMLFSATMPP 168

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNF 500
           +I K+  +   R P    +IP      +I +  + + E +K   +   ++ +       F
Sbjct: 169 NIQKLAHQFL-RNPQHVSVIPKQVSAPLIAQAYIEVHEKQKFEALSRLLDMEAPELAIIF 227

Query: 501 RSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                R + L E           +HG +S   +++VM  F++G+  +L+AT V   G+DV
Sbjct: 228 GRTKRRVDELSEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDV 287

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              S +I  +      + +H++ GR GR  +  +      P
Sbjct: 288 SGVSHVINFDLPQDPESYVHRI-GRTGRAGKEGTAWTFVTP 327


>gi|91206539|sp|Q59LU0|DBP2_CANAL RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 562

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 138/383 (36%), Gaps = 44/383 (11%)

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            +  + +   +  P  PT  Q       L        M+ I     GSGKTL   +    
Sbjct: 135 PDYVLQEVKDQGFP-KPTPIQCQGWPMAL----SGRDMIGI--AATGSGKTLSYCLPSIV 187

Query: 317 AVEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
            + A  Q         +++AP   LA Q      K+ ++++I    + G  P+  + + L
Sbjct: 188 HINAQPQLQYGDGPIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDL 247

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKA 418
            R       I I T     D ++  K        L+L   D     G + +++    Q  
Sbjct: 248 AR----GVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 303

Query: 419 TAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVI 472
                L+ +AT     + L    L D     I           T    VI   ++ D ++
Sbjct: 304 PDRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLV 363

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           + L+  L+E      +         S  R+  E    L      ++AI HG     +++ 
Sbjct: 364 KHLESALNEKDNKILVF-------ASTKRTCDEITTYLRSDGWPALAI-HGDKEQNERDW 415

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           V+D F+ G   +++AT V   GIDV   + +I  +        +H++ GR GRG    + 
Sbjct: 416 VLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRI-GRTGRGGASGTA 474

Query: 593 ILLYHPPLSKNSYTRLSVLKNTE 615
           I  +    SK       +++   
Sbjct: 475 ISFFTEGNSKLGGDLCKIMREAN 497


>gi|110634124|ref|YP_674332.1| DEAD/DEAH box helicase-like [Mesorhizobium sp. BNC1]
 gi|110285108|gb|ABG63167.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1]
          Length = 477

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 131/348 (37%), Gaps = 43/348 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI   LQ          +     G+GKT   ++ M   +E G       + +I
Sbjct: 24  PTPIQAGAIPHALQGKDV------LGIAQTGTGKTASFVLPMLTRLERGRARARMPRTLI 77

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   KY +N ++ + ++ G +    + K LER     A ++I T    
Sbjct: 78  LEPTRELAAQVEENFVKYGKNHRLNIALLIGGVSFDEQEKKLER----GADVLIATPGRL 133

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRT-- 434
            D  +  KL+L  V     DE  R      +   ++           L  +AT  P    
Sbjct: 134 LDHHERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEITK 193

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVII-----PINRIDEVIERLKVVLSEGKKAYWIC 489
           L    L      ++++  +    I   ++     P  + +++ + ++    E K A   C
Sbjct: 194 LTEQFLQGPVRVEVSKPASTAVNITQRLVKSGSKPWAKREKLRDLIRAEGDELKNAIIFC 253

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +  E            F SL  H       +HG M    +  ++++F+ G  KLL+A+ 
Sbjct: 254 NRKTEVAT--------LFRSLVRH-EFDAGALHGDMDQRARMMMLENFRKGKLKLLVASD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   G+D+ D S +   +        +H++ GR GR         +  
Sbjct: 305 VAARGLDIPDVSHVFNFDVPTHSEDYVHRI-GRTGRAGRSGKAFTIVT 351


>gi|150020730|ref|YP_001306084.1| DEAD/DEAH box helicase domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149793251|gb|ABR30699.1| DEAD/DEAH box helicase domain protein [Thermosipho melanesiensis
           BI429]
          Length = 514

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 133/342 (38%), Gaps = 33/342 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q+  I  +L           I+Q   G+GKT    I +   +E+ G  QA+I+ P
Sbjct: 23  KPTPVQKRVIPILLN-----KEKNLIVQAKTGTGKTAAFGIPLIELLESKGYVQAIILTP 77

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I    +  ++ +  + G    + + + L+R       I++GT     D 
Sbjct: 78  TRELALQVSEEI-NSLKRKRLKILPVYGGQSISRQIEHLKR----GVDIVVGTPGRILDH 132

Query: 390 IQYYKL--------ILVIVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIPR---TLVL 437
           ++   +        IL   DE    G      K+ +  +   + LM +  IPR    L  
Sbjct: 133 LERKTIDLSKVEYFILDEADEMLDMGFIDDVEKILKSTSDEKIFLMFSATIPRRIIDLAK 192

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
             + + ++ KI +K       + + I +N  D+     +++  E      +  + + + +
Sbjct: 193 KYIKNYEVIKIADKQLTTNLTEQIYIELNENDKFEALCRIIDVEDDFYGMVFCRTKVEVD 252

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +    ++ER              +HG  S   +E V+  FK     +L+AT V   GID+
Sbjct: 253 NVSSKLIER--------GYDAEALHGDFSQYQRERVLKKFKEKRINILVATDVAARGIDI 304

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              + +I  +        +H++ GR GR       I    P 
Sbjct: 305 SGLTHVINYSIPLNPEHYVHRV-GRTGRAGREGVAITFVTPK 345


>gi|118589105|ref|ZP_01546512.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Stappia aggregata IAM 12614]
 gi|118438434|gb|EAV45068.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Stappia aggregata IAM 12614]
          Length = 505

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 148/385 (38%), Gaps = 44/385 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  +L+      R   +     G+GKT    + M   +E G       + +
Sbjct: 47  EPTAIQSGAIPQVLE------RRDILGIAQTGTGKTASFTLPMLTLLEKGRARARMPRTL 100

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   +Y  N ++ + ++ G +  + + K L+R       ++I T   
Sbjct: 101 ILEPTRELAAQVEENFSRYGTNHKLNIALLIGGVSFSEQDKKLDR----GTDVLIATPGR 156

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     +++DE  R      +   ++       +    P   +TL  ++
Sbjct: 157 LLDHFERGKLLLQGVEILVIDEADRMLDMGFIPDIER-------ICKLIPFTRQTLFFSA 209

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               +I ++TE          V    +  + V + LK   S+  +       + E  E  
Sbjct: 210 TMPPEIQRLTETFLQNPARIEVAPTSSTAENVAQFLKATDSKDYEKRAALRDLLEGAEDL 269

Query: 498 ------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N +  V       E    ++  +HG M    +  ++D+F+ GT KLL+A+ V 
Sbjct: 270 QNAIVFCNRKRDVTTVYRSLERHEYNVGALHGDMDQRTRMMMLDNFRKGTIKLLVASDVA 329

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ + S +   +        +H++ GR GR     +   L      K      +++
Sbjct: 330 ARGLDIPEVSHVFNFDVPSNAEDYVHRI-GRTGRAGRKGTAFTLVTGEDQKYLDAIQTLI 388

Query: 612 KNTEDG------FLIAEEDLKQRKE 630
           K   D       F  A ++ K R++
Sbjct: 389 KKDIDWLGDAIDFEAAAQERKARRK 413


>gi|110598397|ref|ZP_01386670.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340006|gb|EAT58508.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 598

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 134/372 (36%), Gaps = 44/372 (11%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +   + L  + +  PT  Q   I  +L+          + Q   G+GKT    + + + +
Sbjct: 18  EPLMQALEEVGYENPTPIQAETIPLLLEGRDV------LGQAQTGTGKTAAFALPVLSNI 71

Query: 319 E---AGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHG 374
               A  QA+++AP   LA Q  E  ++Y  +     V  I G      + + L+R    
Sbjct: 72  RLALAEPQALVLAPTRELAIQVAEAFQRYAVHLKGFHVVPIYGGQDYGIQLRMLKR---- 127

Query: 375 QAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             H+++GT     D ++   L        +L   DE  R G    ++     T       
Sbjct: 128 GVHVVVGTPGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFIDDVEWILDQTPKD---- 183

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +  + ++     I +I +K        T+      ++ + +  +  +  G    
Sbjct: 184 -----RQVALFSATMPSAIRRIAQKYLNNPAQVTIQTKTTTVETIRQ--RYWIVGGSHKL 236

Query: 487 WICPQIEEKKESN--------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            I  +I E +  +            +E    L      + A+ +G M+   +E  +D  K
Sbjct: 237 DILTRILEVEPFDGILIFVRTKTMTIELAEKLQARGYGAAAL-NGDMAQNQRERTVDQLK 295

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           NG   ++IAT V   G+DV   S +I  +      + +H++ GR GR       IL   P
Sbjct: 296 NGALSIVIATDVAARGLDVERISHVINYDIPSDTESYVHRI-GRTGRAGRTGDAILFVSP 354

Query: 599 PLSKNSYTRLSV 610
                 Y     
Sbjct: 355 REKNMLYAIEKA 366


>gi|141796059|gb|AAI34864.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/366 (21%), Positives = 135/366 (36%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L        M+ I Q   GSGKTL  L+     +          G  
Sbjct: 117 EPTAIQAQGFPLAL----SGRDMVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPI 170

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +    Y ++++I    + G  P+  + + LER       I I T 
Sbjct: 171 CLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLER----GVEICIATP 226

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 227 GRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 286

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I   E  A      I  V +   + +++I+ ++ +++E +    
Sbjct: 287 VRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTI 346

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            +   +               IHG  S  +++ V+  F++G   +LIA
Sbjct: 347 IFV--------ETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIA 398

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +  +     +H++ GR  R     +    + P   + +   
Sbjct: 399 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLRQARDL 457

Query: 608 LSVLKN 613
           + VL+ 
Sbjct: 458 VRVLEE 463


>gi|108742054|gb|AAI17661.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/366 (21%), Positives = 135/366 (36%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L        M+ I Q   GSGKTL  L+     +          G  
Sbjct: 117 EPTAIQAQGFPLAL----SGRDMVGIAQ--TGSGKTLAYLLPAIVHINHQPYLERGDGPI 170

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +    Y ++++I    + G  P+  + + LER       I I T 
Sbjct: 171 CLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLER----GVEICIATP 226

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 227 GRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 286

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I   E  A      I  V +   + +++I+ ++ +++E +    
Sbjct: 287 VRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTI 346

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            +   +               IHG  S  +++ V+  F++G   +LIA
Sbjct: 347 IFV--------ETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIA 398

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +  +     +H++ GR  R     +    + P   + +   
Sbjct: 399 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLRQARDL 457

Query: 608 LSVLKN 613
           + VL+ 
Sbjct: 458 VRVLEE 463


>gi|295692132|ref|YP_003600742.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
 gi|295030238|emb|CBL49717.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
          Length = 494

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 132/348 (37%), Gaps = 38/348 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE  I   LQ          I Q   G+GKT    + +   ++      QAV
Sbjct: 20  GFEEATPIQEQTIPLALQGKDV------IGQAQTGTGKTAAFGLPILQMIDKKEKAIQAV 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E + +  ++    V+++ G      + ++L+   H    I++GT   
Sbjct: 74  IIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK---HHVPSILVGTPGR 130

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D ++   + L  V        DE    G  Q +           +L  A    +TL+ 
Sbjct: 131 LLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDI---------ESILKYAKNRQQTLLF 181

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I +I EK      I   I       ++IE+  V   E +K   +C  I+ +  
Sbjct: 182 SATMPKPILRIGEKFMDHPKI-VRIKAKELTADLIEQYFVRAKESEKFDIMCRLIDVQGP 240

Query: 497 --ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L     +     A IHG +S   + SV+  F+ G   +L+AT V 
Sbjct: 241 DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDILVATDVA 300

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 301 ARGLDISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGQNGISVTFVTPN 347


>gi|149639330|ref|XP_001510706.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46,
           partial [Ornithorhynchus anatinus]
          Length = 974

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 148/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 317 WVQCGISMKILNSLRKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 370

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 371 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKALGLRVVCVYGGTGISE 430

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 431 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 486

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KP++  +   + +   +E+ 
Sbjct: 487 M------RIVDNVRPDRQTVMFSATFPRAMEALARRILN-KPVEVQVGGRSVVCSDVEQQ 539

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E  K   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 540 VIVIEEENKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 599

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FK+GTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 600 DRDSIINDFKSGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 658

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 659 KGHAFTFITEDQARYAGDIIKALE 682


>gi|312978402|ref|ZP_07790144.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
 gi|310894745|gb|EFQ43817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
          Length = 495

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 132/348 (37%), Gaps = 38/348 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE  I   LQ          I Q   G+GKT    + +   ++      QAV
Sbjct: 20  GFEEATPIQEQTIPLALQGKDV------IGQAQTGTGKTAAFGLPILQMIDKKEKAIQAV 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E + +  ++    V+++ G      + ++L+   H    I++GT   
Sbjct: 74  IIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK---HHVPSILVGTPGR 130

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D ++   + L  V        DE    G  Q +           +L  A    +TL+ 
Sbjct: 131 LLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDI---------ESILKYAKNRQQTLLF 181

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I +I EK     P    I       ++IE+  V   E +K   +C  I+ +  
Sbjct: 182 SATMPKPILRIGEKFMDH-PEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRLIDVQGP 240

Query: 497 --ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L     +     A IHG +S   + SV+  F+ G   +L+AT V 
Sbjct: 241 DLALVFGRTKRRVDELTRGLQARGYNAAEIHGDLSQARRMSVLKRFREGKLDILVATDVA 300

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 301 ARGLDISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGQNGISVTFVTPN 347


>gi|301612200|ref|XP_002935570.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Xenopus (Silurana)
           tropicalis]
          Length = 943

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 152/453 (33%), Gaps = 58/453 (12%)

Query: 212 PRKAKDFEWTSPARERLAYDE----LLAGQIALLLMRKQFKKEIGIP---------INVE 258
           P    + E+T   +      E        QI  L  +   +     P            +
Sbjct: 200 PIDHTEIEYTPFEKNFYEEHEEITSQTPQQITELRHKLNLRVSGAAPPRLCSSFAHFGFD 259

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
            ++  +I ++    PT  Q   +   L        M+ I     GSGKT   +  +   +
Sbjct: 260 EQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAAFIWPILVHI 313

Query: 319 EA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                     G  AVI+ P   L QQ +   K++ +   +    + G      + KAL+ 
Sbjct: 314 MDQKELQPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQE 373

Query: 371 IAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPH 422
                A I++ T     D ++           L+    D     G + +++         
Sbjct: 374 ----GAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVR-- 427

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
                  P  +TL+ ++     I K+  +     PI+ V   I   +E I ++  +L  G
Sbjct: 428 -------PDRQTLLFSATFRKKIEKLA-RDILVDPIRVVQGDIGEANEDITQVVEILPSG 479

Query: 483 K-KAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             K  W+  ++ E   +         ++  E   +        + ++HG M   ++  V+
Sbjct: 480 PEKWTWLTRRLVEFTSTGSVLIFVTKKANAEELANNLRQDDHPLGLLHGDMDQSERNKVI 539

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK  +  +L+AT V   G+D+     +I  +         H++ GR GR  E      
Sbjct: 540 SDFKKKSIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGRAGEKGVAHT 598

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           L  P  S  +   +  L+           DL  
Sbjct: 599 LLTPKDSNFAGDLVRNLEGANQYVSKELLDLAM 631


>gi|256844404|ref|ZP_05549890.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           125-2-CHN]
 gi|256613482|gb|EEU18685.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           125-2-CHN]
          Length = 494

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 132/348 (37%), Gaps = 38/348 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE  I   LQ          I Q   G+GKT    + +   ++      QAV
Sbjct: 20  GFEEATPIQEQTIPLALQGKDV------IGQAQTGTGKTAAFGLPILQMIDKKEKAIQAV 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E + +  ++    V+++ G      + ++L+   H    I++GT   
Sbjct: 74  IIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK---HHVPSILVGTPGR 130

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D ++   + L  V        DE    G  Q +           +L  A    +TL+ 
Sbjct: 131 LLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDI---------ESILKYAKNRQQTLLF 181

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I +I EK     P    I       ++IE+  V   E +K   +C  I+ +  
Sbjct: 182 SATMPKPILRIGEKFMDH-PEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRLIDVQGP 240

Query: 497 --ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L     +     A IHG +S   + SV+  F+ G   +L+AT V 
Sbjct: 241 DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDILVATDVA 300

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 301 ARGLDISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGQNGISVTFVTPN 347


>gi|41282082|ref|NP_571016.2| pl10 [Danio rerio]
 gi|37590512|gb|AAH59794.1| Pl10 [Danio rerio]
          Length = 688

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 134/378 (35%), Gaps = 51/378 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA------------MAAAVEA 320
           PT  Q+ AI  I      K++   +     GSGKT   L+                A + 
Sbjct: 231 PTPVQKHAIPII------KSKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGEALQAAKN 284

Query: 321 GGQ-------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             Q             ++++AP   LA Q Y+  +K++  + +   ++ G      + + 
Sbjct: 285 SAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGADIGQQIRD 344

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPH 422
           LER      H+++ T     D ++  K+ L      ++DE  R          ++     
Sbjct: 345 LER----GCHLLVATPGRLLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQD 400

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
              M    + +T++ ++    +I  +  +      I   +  +    E I +  V + E 
Sbjct: 401 T--MPPKGLRQTMMFSATFPKEIQILA-RDFLEDYIFLAVGRVGSTSENITQKVVWVEEN 457

Query: 483 KKAYWICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            K  ++   +               +   +           +   IHG  S  D+E  + 
Sbjct: 458 DKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALH 517

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G C +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      
Sbjct: 518 QFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATSF 576

Query: 596 YHPPLSKNSYTRLSVLKN 613
           ++      +   L +L  
Sbjct: 577 FNDKNGNITKDLLDILVE 594


>gi|157828874|ref|YP_001495116.1| ATP-dependent RNA helicase RhlE [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801355|gb|ABV76608.1| ATP-dependent RNA helicase RhlE [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 410

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 137/342 (40%), Gaps = 35/342 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQAVIMAPI 330
            PT+ Q+ +I   +           +     GSGKTL  L+ +  + ++    A+I+ P 
Sbjct: 21  EPTEIQKQSIPVAMAG------SDILASSQTGSGKTLAYLLPLIDSFIKNKTTALILVPT 74

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q +  + K T + +I   ++ G  P   +   L++       +IIGT     D +
Sbjct: 75  RELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQLKK----NPKVIIGTPGRIIDHL 130

Query: 391 QYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               L        +L  +D     G++++L+   K               + L+ ++   
Sbjct: 131 NRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEK---------RQVLMFSATMP 181

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----E 497
             I  +++K     P++  +   N+    I++  + +S+ +K   +  Q+  ++      
Sbjct: 182 KHIIAVSQKYLN-NPVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLGHREGSVIIF 240

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++   + ++   +   IHG +S   +E V+ SF+    ++++AT V   G+D+
Sbjct: 241 VKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDI 300

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
                +I  +        LH++ GR GR       +    P 
Sbjct: 301 PHTQHVINYDLPMCPEDYLHRI-GRTGRAGATGHALSFISPD 341


>gi|148230348|ref|NP_001079703.1| similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA
           helicase, 68kDa) [Xenopus laevis]
 gi|28838521|gb|AAH47981.1| MGC53795 protein [Xenopus laevis]
          Length = 607

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 145/380 (38%), Gaps = 44/380 (11%)

Query: 261 IAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
              ++++ + F  PT  Q       L  +        +     GSGKTL  L+     + 
Sbjct: 100 NVMEVIKRLNFTEPTPIQGQGWPVALSGLD------MVGVAMTGSGKTLSYLLPGIVHIN 153

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 154 HQPFLQRGDGPILLVLAPTRELAQQVQQVAAEYGRACRLRTTCIYGGAPKGPQIRDLER- 212

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 213 ---GVEICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 269

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRKPIKTVII--PINRIDEVIERL 475
             L+ +AT     R L    L +     I   E  A    ++ V +     + D+++  +
Sbjct: 270 QTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCNDGEKDDKLVRLM 329

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   +    L      ++ I HG  S  +++ V++
Sbjct: 330 EEIMSEKENKTIVFVETK-------RRCDDLTRRLRRDGWPAMGI-HGDKSQQERDWVLN 381

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 382 EFKHGKSPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSSKTGTAYTF 440

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 441 FTPGNIKQVNDLVSVLREAN 460


>gi|59713567|ref|YP_206342.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481815|gb|AAW87454.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 634

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 148/365 (40%), Gaps = 27/365 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +PT  Q ++I  +L+          + +   G+GKT    + +   +   +   QA+IMA
Sbjct: 28  APTPIQAASIPLLLEGRD------ALGKAQTGTGKTAAFSLPLLNKINLKQHNPQAIIMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   +N   + V  I G      + +AL R     AHII+GT    +
Sbjct: 82  PTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALSR----GAHIIVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSLGDIDI 445
           D +   +L L    E H F + +  ++ +      V  +L  A    + ++ ++     +
Sbjct: 138 DLLNRDRLNLG---EVHTFILDEADEMLKMGFVDDVTWILEKAPDTAQRILFSATMPPMV 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
             I ++   R+P +  +   N   + +E+   V+   +K   +   +E ++         
Sbjct: 195 KTIVDRYL-REPARVDVAGTNHTVDKVEQNFWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D+ KNG   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V K+T +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQMRMLRTIERVTKSTMEEIQ 372

Query: 620 IAEED 624
           +   D
Sbjct: 373 LPHRD 377


>gi|110638956|ref|YP_679165.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110281637|gb|ABG59823.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 446

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 130/356 (36%), Gaps = 27/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +LQ          +     G+GKT    I +   +            +
Sbjct: 23  TPTPIQSQAIPYVLQGKD------LLGCAQTGTGKTAAFSIPILQLLSVKKSTDRKRPIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           ++I+ P   LA Q  E ++ Y + T +   +I G + Q+ +  AL+        +++ T 
Sbjct: 77  SLIVTPTRELAIQIGESLQAYGKYTGLTSTVIFGGVNQSRQVTALQN----GIDVLVATP 132

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    + L  + E        R+           LL+      ++L  ++    
Sbjct: 133 GRLLDLMNQGFISLRHI-EIFVLDEADRMLDMGFVHDVRRLLLALPAKRQSLFFSATMPP 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--- 500
           +I K+ +      P K  + P++   + I++    +  G K   +   +++ K       
Sbjct: 192 EIVKLADN-ILVNPSKVEVTPVSSTADTIKQFMYFVDRGNKNNLLVEVLQDPKIKTCLVF 250

Query: 501 ---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              + V ++   +          IHG  S   +++ + +FK  T ++L+AT +   GIDV
Sbjct: 251 TRTKHVADKVVKMLAEHKIKAEAIHGNKSQNARQNALTNFKAQTTRILVATDIAARGIDV 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            +   +I     +     +H++ GR GR     +                  ++  
Sbjct: 311 DNLEFVINYEIPNIPETYVHRI-GRTGRAGAKGTAFSFCDAEEKAYLKDIEKLISK 365


>gi|239946654|ref|ZP_04698407.1| ATP-dependent RNA helicase RhlE [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920930|gb|EER20954.1| ATP-dependent RNA helicase RhlE [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 410

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 135/342 (39%), Gaps = 35/342 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQAVIMAPI 330
            PT+ Q+ +I   +           +     GSGKTL  L+ +  + ++    A+I+ P 
Sbjct: 21  EPTEIQKQSIPVAIAG------SDILASSQTGSGKTLAYLLPLIDSFIKNKTTALILVPT 74

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q +  + K T   +I   ++ G  P   +   L++       +IIGT     D +
Sbjct: 75  RELATQIHSTLNKVTTPYKINSAVLIGGEPMPKQFMQLKK----NPKVIIGTPGRIIDHL 130

Query: 391 QYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               L        +L  +D     G++++L+   K               + L+ ++   
Sbjct: 131 NRGSLKIDRIGITVLDEMDRMLDMGMKEQLEGINKFLPEK---------RQVLMFSATMP 181

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----E 497
             I  +++K     P++  +   N+    I++  + +S+ +K   +  Q+  ++      
Sbjct: 182 KHIIALSQKYLN-NPVRITVGATNKAAAEIKQESLHISDKEKFSELTKQLGNREGSVIIF 240

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++   + ++       IHG +S   +E V+ SF+    ++++AT V   G+D+
Sbjct: 241 VKTKRSADQLAKMLKYENHKAEAIHGDLSQHQRERVILSFRKSNHRIMVATDVAARGLDI 300

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
                +I  +        LH++ GR GR       +    P 
Sbjct: 301 PHTQHVINYDLPMCPEDYLHRI-GRTGRAGATGYALSFISPD 341


>gi|195453112|ref|XP_002073643.1| GK14214 [Drosophila willistoni]
 gi|194169728|gb|EDW84629.1| GK14214 [Drosophila willistoni]
          Length = 745

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/451 (16%), Positives = 150/451 (33%), Gaps = 54/451 (11%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR-NIP 270
           P +  DF   +P ++    +       +   +++   +             Q      +P
Sbjct: 253 PMRPVDFSNLTPFKKNFYQEHTTVANRSPYEVQRYRDEHEITVRGQAQNPIQDFNEVYLP 312

Query: 271 F------------SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
                         PT  Q       +           +     GSGKTL  ++     +
Sbjct: 313 DYVMKEIRRQGYKEPTPIQAQGWPIAMSG------SNFVGIAKTGSGKTLGYILPAIVHI 366

Query: 319 EA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                     G  A+++AP   LAQQ  +   ++  ++ +    + G  P+  + + L+R
Sbjct: 367 NNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQR 426

Query: 371 IAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
                  I+I T     D     S    +   +++DE  R          +K  +     
Sbjct: 427 GCE----IVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR-- 480

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSE 481
               P  +TL+ ++    ++ ++ E   G      +    +   + I +V+E       E
Sbjct: 481 ----PDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKE 536

Query: 482 GKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
            K    +    +  +           +  V+        F      IHG  S  +++ V+
Sbjct: 537 DKLKSLLSDIYDTSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVL 596

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+DV     +I  +        +H++ GR GR     +   
Sbjct: 597 REFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRI-GRTGRSNTKGTSFA 655

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            +    +K +   + VL+        A E+L
Sbjct: 656 FFTKNNAKQAKALVDVLREANQEINPALENL 686


>gi|126740399|ref|ZP_01756087.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
 gi|126718535|gb|EBA15249.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
          Length = 506

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 151/396 (38%), Gaps = 46/396 (11%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           K+        +N+  K+ + I      +PT  Q  AI   L+          +     G+
Sbjct: 31  KRMHMTKFTDLNLNPKVLKAIYEAGYETPTPIQAGAIPPALEGRDV------LGIAQTGT 84

Query: 305 GKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           GKT    + M   +  G       +++++ P   LA Q  E    YT++ ++   ++ G 
Sbjct: 85  GKTASFTLPMITLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGG 144

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLK 413
           +    + + +++       ++I T     D  +  KL+L     ++VDE  R      + 
Sbjct: 145 VSFKEQDQLIDK----GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIP 200

Query: 414 LTQKATAPHVLLMTATPI-PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
             ++       + + TP   +TL  ++    +I +IT       P +  +       E I
Sbjct: 201 DIER-------IFSLTPFTRQTLFFSATMAPEIERITNTFL-SAPERVEVARQATTSENI 252

Query: 473 ERLKVVL------SEGKKAYWICPQIEEKK---------ESNFRSVVERFNSLHEHFTSS 517
           E+  V+        EG +   +   + E++           N ++ V+      + +   
Sbjct: 253 EQSVVMFKASRKDREGSEKRRVLRTLIEQEGDKLTNGIIFCNRKTDVDIVAKSLKKYGFD 312

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            A IHG +    +   +D F++G+ ++L+A+ V   G+DV   S +   +        +H
Sbjct: 313 AAPIHGDLDQSQRTKTLDGFRDGSLRILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVH 372

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           ++ GR GR       I +  P   K       ++K 
Sbjct: 373 RI-GRTGRAGRDGKAITICAPRDEKALAAVEDLVKK 407


>gi|126728360|ref|ZP_01744176.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Sagittula
           stellata E-37]
 gi|126711325|gb|EBA10375.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Sagittula
           stellata E-37]
          Length = 736

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 93/412 (22%), Positives = 164/412 (39%), Gaps = 48/412 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           + T  QE+          +      ++    GSGKT+   +A+A  +    QA       
Sbjct: 16  TLTPVQEAVTAP------EAFGRDLLVSAQTGSGKTVGFGLAIAPTLLGEEQAFGPAGTP 69

Query: 325 --VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++AP   LA Q  + ++   + T  +V    G M     R+ LER      HI++GT
Sbjct: 70  LALVVAPTRELAFQVMQELRWLYEKTGAMVNSCVGGMDVRQERRFLER----GTHIVVGT 125

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I+   L L  V        DE    G ++ L+           L TA    RT
Sbjct: 126 PGRLCDHIRRGALDLSDVRAVVLDEADEMLDLGFREDLEFI---------LQTAPAERRT 176

Query: 435 LVLTSLGDIDISKITEKPA-GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           L+ ++     I +I E+       I T+       D   + L+V  ++   A +   +  
Sbjct: 177 LLFSATVSPVIGRIAEEFQKDAFRINTINKAQQHADIAYKALRVAQADSDHAIFNLLRFH 236

Query: 494 EKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           + + +    N R+ V    +   +   S+  + G +S  ++   + + ++G  ++ +AT 
Sbjct: 237 DDESAIVFANTRAQVNHLTARLHNRGLSVVSLSGELSQQERTHALQAMRDGRARVCVATD 296

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + S++I  +      + LH+  GR GR  +     L+  P   K +   L 
Sbjct: 297 VAARGIDLPNLSLVIHADLPTNTESLLHR-SGRTGRAGKKGISALIVPPKSVKKAERLLK 355

Query: 610 VLKNTEDG-FLIAEEDLKQRKEGEILGI--KQSGMPKFLIAQPELHDSLLEI 658
             K T +     + ED+  R E ++L     Q G+P+    Q E    LLE 
Sbjct: 356 WAKITAEWAVPPSAEDISARDEEKLLTDPSWQMGVPED---QAEFAARLLEA 404


>gi|296237741|ref|XP_002763877.1| PREDICTED: ATP-dependent RNA helicase DDX3Y-like [Callithrix
           jacchus]
          Length = 647

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 148/379 (39%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I      K +   +     GSGKT   L+ + + +   G          
Sbjct: 190 PTPVQKHAIPII------KGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKG 243

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 244 NGRCGRRKQYPVSLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 302

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D+    G + Q  ++ ++ T P 
Sbjct: 303 ---GCHLLVATPGRLVDMMERGKIALDFCKYLVLDEADKMLDMGFEPQIRRIVEQDTMPP 359

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   +I +  +D+    
Sbjct: 360 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVIWVEDLDKRSFL 418

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L ++ + G+ +  +   +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 419 LDILGATGRDSLTLV-FVETKK------GADSLEDFLYHEGHACTSIHGDRSQRDREEAL 471

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 472 RQFRSGRSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 530

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 531 FFNEKNVNIAKDLLDLLVE 549


>gi|67459931|ref|NP_001019988.1| probable ATP-dependent RNA helicase DDX46 [Danio rerio]
 gi|82277867|sp|Q4TVV3|DDX46_DANRE RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46
 gi|66473312|gb|AAY46301.1| DEAD box protein 46 [Danio rerio]
          Length = 1018

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 150/388 (38%), Gaps = 41/388 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  K+   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 342 WVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRD------LIGIAKTGSGKTIAFL 395

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK++++  + V  + G    + 
Sbjct: 396 LPMFRHILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISE 455

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 456 QIAELKR----GAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQV 511

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KP++  +   + +   +E+ 
Sbjct: 512 M------RIVDNVRPDRQTVMFSATFPRTMEALARR-ILSKPVEVQVGGRSVVCSDVEQH 564

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 565 VIVIEEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQY 624

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNG C+LL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 625 DRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHR-AGRTGRAGN 683

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTED 616
                       ++ S   L  L+ +  
Sbjct: 684 KGYAYTFITEGQARYSGDILKALELSGS 711


>gi|62289879|ref|YP_221672.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699806|ref|YP_414380.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189024121|ref|YP_001934889.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237815373|ref|ZP_04594371.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
 gi|254697319|ref|ZP_05159147.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730216|ref|ZP_05188794.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|260545377|ref|ZP_05821118.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260757905|ref|ZP_05870253.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260761727|ref|ZP_05874070.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|62196011|gb|AAX74311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615907|emb|CAJ10911.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Brucella melitensis biovar Abortus 2308]
 gi|189019693|gb|ACD72415.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237790210|gb|EEP64420.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
 gi|260096784|gb|EEW80659.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260668223|gb|EEX55163.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260672159|gb|EEX58980.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
          Length = 482

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 138/365 (37%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE------RKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTL 435
             D  +  KL+L  V     DE  R      +   ++           L  +AT  P   
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEIT 193

Query: 436 VLTSLGDIDISKI-------TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            LT        +I       T K   ++ +K+     ++   + + ++      K A   
Sbjct: 194 KLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEGDSLKNAIIF 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         + V E F SL  H       +HG M    + +++ SFK+G  +LL+A+
Sbjct: 254 CNR--------KKDVSELFRSLTRH-EFDAGALHGDMDQRARMAMLSSFKDGKLRLLVAS 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S +   +        +H++ GR GR         +     +K      
Sbjct: 305 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 609 SVLKN 613
           S++  
Sbjct: 364 SMIGE 368


>gi|304403873|ref|ZP_07385535.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304346851|gb|EFM12683.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 500

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/340 (20%), Positives = 115/340 (33%), Gaps = 30/340 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            PT  Q  AI  +L           I+Q   G+GKTL   + +   ++      QA+I+ 
Sbjct: 25  EPTPVQHKAIPLVLNG------ADVIVQAQTGTGKTLAFALPILERIDTTKNHTQALILT 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    + K  +     +    G      + + L        HI+I T     D
Sbjct: 79  PTRELAIQITTELNKLAKTVGANILAAYGGQDVESQIRKLRNSW---PHIVIATPGRLLD 135

Query: 389 SIQY--------YKLILVIVDEQHRFGV---QQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            ++           L+L   D+    G     + +  +        +L +AT   +   L
Sbjct: 136 HLRRETIRLGKIRMLVLDEADQMLHMGFLPDVETIVSSMPRQHRQTMLFSATMPAQIRKL 195

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +      + +   P      K   + I   D   E   V L    + Y           
Sbjct: 196 GAEYMNGPTDVNITPEKVTVDKIRQVAIETTDRRKEDTLVELIGKYQPYLAVVFCRT--- 252

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++ N   +    S   +HG +S   +E VM  F+    ++LIAT V   G+DV
Sbjct: 253 ---KVRAKKLNEALQERGISSDELHGDLSQAKREQVMKRFRQARLQVLIATDVAARGLDV 309

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
              S +   +        +H++ GR GR       + L  
Sbjct: 310 EGVSHVFNYDVPQDPETYVHRI-GRTGRAGNEGMAVTLVS 348


>gi|118462257|ref|YP_880643.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium 104]
 gi|118163544|gb|ABK64441.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium 104]
          Length = 566

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/358 (20%), Positives = 134/358 (37%), Gaps = 35/358 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  Q + I  ++           +     G+GKT    I + + ++      QA+++A
Sbjct: 35  TPTGIQAATIPALMAG------SDVVGLAQTGTGKTAAFAIPILSKIDVASTATQALVLA 88

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y  +   I V  I G    A +   L+R     AH+++GT     
Sbjct: 89  PTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLKR----GAHVVVGTPGRVI 144

Query: 388 DSIQYYKLILVIVD--------EQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVL 437
           D ++   L L  VD        E    G  + +   L++      V L +AT  P    L
Sbjct: 145 DHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFSATMPPAIRKL 204

Query: 438 TSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           T+    D  +++ K        I    I +    ++    +V+  E  +A  +  +    
Sbjct: 205 TAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKMDALTRVLEVEPFEAMIVFVRT--- 261

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E           S A I+G +    +E  + + K+G   +L+AT V   G+
Sbjct: 262 -----KQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAARGL 316

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           DV   S ++  +  H   + +H++ GR GR     + +L   P             + 
Sbjct: 317 DVERISHVLNYDIPHDTESYVHRI-GRTGRAGRSGTALLFVSPRERHLLKAIEKATRQ 373


>gi|46907469|ref|YP_013858.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093505|ref|ZP_00231267.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 4b
           H7858]
 gi|226223849|ref|YP_002757956.1| ATP-dependent RNA helicase (DEAD motif) [Listeria monocytogenes
           Clip81459]
 gi|254824696|ref|ZP_05229697.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J1-194]
 gi|254852700|ref|ZP_05242048.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL R2-503]
 gi|254932440|ref|ZP_05265799.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HPB2262]
 gi|255522060|ref|ZP_05389297.1| ATP-dependent RNA helicase (DEAD motif) [Listeria monocytogenes FSL
           J1-175]
 gi|300765280|ref|ZP_07075264.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N1-017]
 gi|46880737|gb|AAT04035.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018123|gb|EAL08894.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 4b
           H7858]
 gi|225876311|emb|CAS05020.1| Putative ATP-dependent RNA helicase (DEAD motif) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606021|gb|EEW18629.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL R2-503]
 gi|293583997|gb|EFF96029.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HPB2262]
 gi|293593935|gb|EFG01696.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J1-194]
 gi|300513963|gb|EFK41026.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N1-017]
 gi|332311691|gb|EGJ24786.1| ATP-dependent RNA helicase dbpA [Listeria monocytogenes str. Scott
           A]
          Length = 470

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 138/370 (37%), Gaps = 38/370 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  ++ +  + ++  T  Q++ I   L           + +   GSGKT    I +A  
Sbjct: 7   SEEIKRAINELGYTEATPVQKAVIPVALTGED------IVAKSQTGSGKTAAFAIPIAEQ 60

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           +E      QA+I+ P   LA Q         +  ++    I G  P A ++  L +    
Sbjct: 61  IEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKN-- 118

Query: 375 QAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
             HI++GT     D I+           L+L  VDE    G   ++   L++       L
Sbjct: 119 --HIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNL 176

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             +AT       L      D   I        PI  V +  +  ++ ++   V+++E   
Sbjct: 177 FFSATMPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQTDNKEKTLKD--VLITENPD 234

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +  I    + +            + L +     ++ IHG +   D+   MD FK+G  + 
Sbjct: 235 SAIIFCNTKNQ-----------VDELTDLLDVKVSKIHGGLRQEDRFRAMDDFKSGKSRF 283

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   GIDV + S++I  +        +H++ GR GR  +    I       +   
Sbjct: 284 LIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRI-GRTGRAGKSGKAISFVKTNENPLL 342

Query: 605 YTRLSVLKNT 614
                +L  T
Sbjct: 343 RDIEEMLDVT 352


>gi|311070440|ref|YP_003975363.1| ATP-dependent RNA helicase [Bacillus atrophaeus 1942]
 gi|310870957|gb|ADP34432.1| ATP-dependent RNA helicase [Bacillus atrophaeus 1942]
          Length = 481

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 141/371 (38%), Gaps = 40/371 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           L  + + SPT+ Q+  +   L+      +   +++   GSGKT    I +       E  
Sbjct: 19  LEGLGYMSPTEVQQKVMPQALE------KKDLVVKSQTGSGKTAAFGIPICEMADWDENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E I    +  ++    + G  P   ++  L++    + HI++G
Sbjct: 73  PQALILTPTRELAVQVKEDITNIGRFKRMKAAAVFGKSPFDKQKAELKQ----KTHIVVG 128

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+           L++   DE    G  +++   +         +L +AT  
Sbjct: 129 TPGRVLDHIEKGTFPLERLKYLVIDEADEMLNMGFIEQVEAIIKHLPRDRMTMLFSATLP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L    + + +  +I       K I+  +I +    +      V+++E   +  I 
Sbjct: 189 EDVEQLSRKYMKNPEHIEIKAAGLTTKHIEHSVIEVREDHKFSLLKDVLVTENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E         V++ +   +        IHG M   D+  VM+ FK G  + L AT 
Sbjct: 249 CRTKEN--------VDKLSEELDALDYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLAATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P   +      +
Sbjct: 301 VAARGIDIENITHVINYDLPLEKESYVHR-TGRTGRAGNQGKAITFVTPYEKRFLAEIEA 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|301171467|ref|NP_001180345.1| ATP-dependent RNA helicase DDX3X isoform 2 [Homo sapiens]
          Length = 661

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 430

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 431 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 544 FFNERNINITKDLLDLLVE 562


>gi|296235289|ref|XP_002762845.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 1 [Callithrix
           jacchus]
 gi|297709768|ref|XP_002831596.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Pongo
           abelii]
          Length = 660

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 430

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 431 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 544 FFNERNINITKDLLDLLVE 562


>gi|197692141|dbj|BAG70034.1| ATP-dependent RNA helicase DDX3X [Homo sapiens]
 gi|197692387|dbj|BAG70157.1| ATP-dependent RNA helicase DDX3X [Homo sapiens]
          Length = 662

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 430

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 431 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 544 FFNERNINITKDLLDLLVE 562


>gi|301171475|ref|NP_001180346.1| ATP-dependent RNA helicase DDX3X isoform 3 [Homo sapiens]
 gi|296235291|ref|XP_002762846.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 2 [Callithrix
           jacchus]
 gi|297709770|ref|XP_002831597.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Pongo
           abelii]
 gi|194388152|dbj|BAG65460.1| unnamed protein product [Homo sapiens]
          Length = 646

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 187 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 240

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 241 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 299

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 300 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 356

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 357 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 414

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 415 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 468

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 469 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 527

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 528 FFNERNINITKDLLDLLVE 546


>gi|194227826|ref|XP_001491482.2| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box
           protein 3, X-chromosomal) (Helicase-like protein 2)
           (HLP2) (DEAD box, X isoform) [Equus caballus]
          Length = 762

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 303 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 356

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 357 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 415

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 416 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 472

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 473 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 530

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 531 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 584

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 585 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 643

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 644 FFNERNINITKDLLDLLVE 662


>gi|163915660|gb|AAI57684.1| LOC100135374 protein [Xenopus (Silurana) tropicalis]
          Length = 898

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 152/453 (33%), Gaps = 58/453 (12%)

Query: 212 PRKAKDFEWTSPARERLAYDE----LLAGQIALLLMRKQFKKEIGIP---------INVE 258
           P    + E+T   +      E        QI  L  +   +     P            +
Sbjct: 155 PIDHTEIEYTPFEKNFYEEHEEITSQTPQQITELRHKLNLRVSGAAPPRLCSSFAHFGFD 214

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
            ++  +I ++    PT  Q   +   L        M+ I     GSGKT   +  +   +
Sbjct: 215 EQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAAFIWPILVHI 268

Query: 319 EA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                     G  AVI+ P   L QQ +   K++ +   +    + G      + KAL+ 
Sbjct: 269 MDQKELQPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQE 328

Query: 371 IAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPH 422
                A I++ T     D ++           L+    D     G + +++         
Sbjct: 329 ----GAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVR-- 382

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
                  P  +TL+ ++     I K+  +     PI+ V   I   +E I ++  +L  G
Sbjct: 383 -------PDRQTLLFSATFRKKIEKLA-RDILVDPIRVVQGDIGEANEDITQVVEILPSG 434

Query: 483 K-KAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             K  W+  ++ E   +         ++  E   +        + ++HG M   ++  V+
Sbjct: 435 PEKWTWLTRRLVEFTSTGSVLIFVTKKANAEELANNLRQDDHPLGLLHGDMDQSERNKVI 494

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK  +  +L+AT V   G+D+     +I  +         H++ GR GR  E      
Sbjct: 495 SDFKKKSIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGRAGEKGVAHT 553

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
           L  P  S  +   +  L+           DL  
Sbjct: 554 LLTPKDSNFAGDLVRNLEGANQYVSKELLDLAM 586


>gi|74006742|ref|XP_861537.1| PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide
           3 isoform 11 [Canis familiaris]
          Length = 646

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 187 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 240

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 241 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 299

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 300 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 356

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 357 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 414

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 415 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 468

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 469 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 527

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 528 FFNERNINITKDLLDLLVE 546


>gi|62087546|dbj|BAD92220.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 variant [Homo
           sapiens]
          Length = 674

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 215 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 268

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 269 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 327

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 328 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 384

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 385 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 442

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 443 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 496

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 497 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 555

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 556 FFNERNINITKDLLDLLVE 574


>gi|2580550|gb|AAC51829.1| dead box, X isoform [Homo sapiens]
 gi|2580552|gb|AAC51830.1| dead box, X isoform [Homo sapiens]
          Length = 662

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 430

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 431 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 544 FFNERNINITKDLLDLLVE 562


>gi|74006722|ref|XP_861268.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 3 [Canis familiaris]
 gi|74006724|ref|XP_861300.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 4 [Canis familiaris]
 gi|74006730|ref|XP_861379.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 6 [Canis familiaris]
 gi|74006732|ref|XP_538003.2| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 1 [Canis familiaris]
          Length = 662

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 430

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 431 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 544 FFNERNINITKDLLDLLVE 562


>gi|87196351|ref|NP_001347.3| ATP-dependent RNA helicase DDX3X isoform 1 [Homo sapiens]
 gi|3023628|sp|O00571|DDX3X_HUMAN RecName: Full=ATP-dependent RNA helicase DDX3X; AltName: Full=DEAD
           box protein 3, X-chromosomal; AltName: Full=DEAD box, X
           isoform; AltName: Full=Helicase-like protein 2;
           Short=HLP2
 gi|2148924|gb|AAB95637.1| helicase like protein 2 [Homo sapiens]
 gi|3523150|gb|AAC34298.1| DEAD box RNA helicase DDX3 [Homo sapiens]
 gi|15080078|gb|AAH11819.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Homo sapiens]
 gi|57209229|emb|CAI41416.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Homo sapiens]
 gi|119579806|gb|EAW59402.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579807|gb|EAW59403.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579808|gb|EAW59404.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579809|gb|EAW59405.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|158255742|dbj|BAF83842.1| unnamed protein product [Homo sapiens]
 gi|168277370|dbj|BAG10663.1| ATP-dependent RNA helicase DDX3X [synthetic construct]
          Length = 662

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 430

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 431 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 544 FFNERNINITKDLLDLLVE 562


>gi|76253275|emb|CAH61467.1| Pl10-related protein [Rana lessonae]
          Length = 687

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 136/374 (36%), Gaps = 47/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I+      ++   +     GSGKT   L+ + + + A G          
Sbjct: 246 PTPVQKHAIPIII------DKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLKD 299

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K+   +++   ++ G      + + LER 
Sbjct: 300 NGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSKVRPCVVYGGADIGQQIRDLER- 358

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLM 426
                H+++ T     D ++  K+ L      ++DE  R          ++        M
Sbjct: 359 ---GCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDT--M 413

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
               + +T++ ++    +I  +  +    + I   +  +    E I +  V + E  K  
Sbjct: 414 PPKGVRQTMMFSATFPKEIQILA-RDFLEEYIFLAVGRVGSTSENITQKVVWVEEMDKRS 472

Query: 487 WICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           ++   +               +   +       H   +   IHG  S  D+E  +  F++
Sbjct: 473 FLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 532

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++  
Sbjct: 533 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATSFFNEK 591

Query: 600 LSKNSYTRLSVLKN 613
               +   L +L  
Sbjct: 592 NINITKDLLDLLVE 605


>gi|88801632|ref|ZP_01117160.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88782290|gb|EAR13467.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 432

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/360 (18%), Positives = 134/360 (37%), Gaps = 36/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
            P+  QE AI  IL+          +     G+GKT    + +   +           +A
Sbjct: 23  KPSPIQEKAIPHILEGKD------ILASAQTGTGKTAGFTLPVLQYLVETKHPKYRPLRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q ++ +++Y++   I   ++ G +    +   L         I++ T  
Sbjct: 77  LVLTPTRELAAQVHDNVREYSKYVDIKSTVVFGGVNAKPQIATLRS----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++ + ++ ++I+DE  R      ++   K       +++  P  R  ++ S
Sbjct: 133 RLLDLHDQKALSFKRVEVLILDEADRMLDMGFVRDINK-------IISFMPAKRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +  K       R P+     P N   + +      + + KK  +    I+E   + 
Sbjct: 186 ATFSNDIKKLASGILRDPVSVETAPQNSTAKKVTHKVYKVDKNKKTEFTIKLIKEGNWNQ 245

Query: 500 ---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F       N L E       S A IHG  S   +   + +FK+G+ K+L+AT +   
Sbjct: 246 VLVFTRTKHGANKLTEKLIKADISAAAIHGNKSQGARTKALKNFKDGSIKILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++     +     +H++ GR GR       I L     S+       +L  
Sbjct: 306 GLDIPLLPHVVNFELPNVPEDYVHRI-GRTGRAGAAGEAISLVCSEESEYQSEIEKLLNE 364


>gi|145219994|ref|YP_001130703.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206158|gb|ABP37201.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeovibrioides DSM
           265]
          Length = 598

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 128/347 (36%), Gaps = 43/347 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  Q   I  +++          + Q   G+GKT    + + + ++      Q +++A
Sbjct: 32  TPTPIQARTIPLLIEGRDV------LGQAQTGTGKTAAFALPILSNIDFSATEPQVLVLA 85

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   KY ++     V  I G      + + L+R      H+++GT     
Sbjct: 86  PTRELAIQVAEAFHKYAEHLKGFHVLPIYGGQEYGSQLRMLKR----GVHVVVGTPGRVM 141

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++           L+L   DE  R G    ++   + T             +  + ++
Sbjct: 142 DHMRKGSLNLHSLKCLVLDEADEMLRMGFIDDVEWILEQTPSD---------RQVALFSA 192

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I +I +K        T+      +D + +  +  +  G     I  +I E +  +
Sbjct: 193 TMPAPIRRIAQKYLNDPAEVTIQAKTTTVDTIRQ--RYWIVGGSHKIDILTRILEVEPFD 250

Query: 500 --------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                       +E    L      S A ++G M    +E  +D  K+G   ++IAT V 
Sbjct: 251 GMIIFVRTKTMTLEIAEKLQARGY-SAAALNGDMVQQQRERTIDQLKSGALNIVIATDVA 309

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             G+DV   S +I  +      + +H++ GR GR       IL   P
Sbjct: 310 ARGLDVERISHVINYDIPSDTESYVHRI-GRTGRAGRSGEAILFVSP 355


>gi|238650986|ref|YP_002916842.1| ATP-dependent RNA helicase RhlE [Rickettsia peacockii str. Rustic]
 gi|238625084|gb|ACR47790.1| ATP-dependent RNA helicase RhlE [Rickettsia peacockii str. Rustic]
          Length = 410

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 137/342 (40%), Gaps = 35/342 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQAVIMAPI 330
            PT+ Q+ +I   +           +     GSGKTL  L+ +  + ++    A+I+ P 
Sbjct: 21  EPTEIQKQSIPVAMAG------SDILASSQTGSGKTLAYLLPLIDSFIKNKTTALILVPT 74

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q +  + K T + +I   ++ G  P   +   L++       +IIGT     D +
Sbjct: 75  RELATQIHSTLNKVTTSYKINSAVLIGGAPMPKQFMQLKK----NPKVIIGTPGRIIDHL 130

Query: 391 QYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               L        +L  +D     G++++L+   K               + L+ ++   
Sbjct: 131 NRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEK---------RQVLMFSATMP 181

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----E 497
             I  +++K     P++  +   N+    I++  + +S+ +K   +  Q+  ++      
Sbjct: 182 KHIIAVSQKYLN-NPVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLGNREGSVIIF 240

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++   + ++   +   IHG +S   +E V+ SF+    ++++AT V   G+D+
Sbjct: 241 VKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDI 300

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
                +I  +        LH++ GR GR       +    P 
Sbjct: 301 PHTQHVINYDLPMCPEDYLHRI-GRTGRAGATGHALSFISPD 341


>gi|5059030|gb|AAD38876.1|AF110008_1 p68 RNA helicase [Molgula occulta]
          Length = 619

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 134/375 (35%), Gaps = 61/375 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q     + +           +     GSGKTL  ++     + A        G  
Sbjct: 171 EPTPIQAIGWPNAMSGHD------CVGIAKTGSGKTLGFILPAIVHINAQPYLDPGDGPI 224

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LAQQ  +   ++  ++ I    + G   +  + + LER       I+I T 
Sbjct: 225 VLVLCPTRELAQQVQQVAAEFGSSSHIKNTCVYGGASKGPQLRDLERGCE----IVIATP 280

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D ++  K        L+L   D     G + +++           +    P  +TL
Sbjct: 281 GRLIDFLEQKKTNLRRCTYLVLDEADRMLDMGFEPQIRKI---------ISQIRPDRQTL 331

Query: 436 VLTSLGDIDISKITEKPAGRK-----------------PIKTVIIPINRIDEVIERLKVV 478
           + ++    ++SK+     G                    I  V  P+ + ++++  ++ +
Sbjct: 332 MWSATWPKEVSKLASDFLGDFVHVQVGSTGLSANHNILQIVDVCQPMEKDEKLMRLMEEI 391

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           + E +    I            +   +               IHG  S  +++ V++ F+
Sbjct: 392 MGESENKTIIFT--------ETKRRCDELTRTMRRDGWPAMCIHGDKSQPERDWVLNEFR 443

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L+AT V   G+DV D   +I  +        +H++ GR  R E+  +    +  
Sbjct: 444 SGRSPILVATDVASRGLDVHDVKFVINYDFPSQCEDYVHRI-GRTARAEQKGTAYTFFTY 502

Query: 599 PLSKNSYTRLSVLKN 613
             +K +   + +L+ 
Sbjct: 503 DNAKQAKDLVGILQE 517


>gi|332687106|ref|YP_004456880.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
 gi|332371115|dbj|BAK22071.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
          Length = 502

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 131/350 (37%), Gaps = 35/350 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           +    F   T  Q   I   L+          I Q   G+GKT    + M   ++   Q 
Sbjct: 16  IERSGFEEATPIQAETIPLALKGKDV------IGQAQTGTGKTAAFGLPMLEKIDTKNQK 69

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++AP   LA Q  E + +  ++ +I ++ + G      + +AL+     +  I++G
Sbjct: 70  LQGLVIAPTRELAIQTQEELYRLGRDKKIKIQAVYGGADIGRQIRALKE----RPQIVVG 125

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D +    L L ++        DE    G  + +   ++Q       LL +AT  
Sbjct: 126 TPGRLLDHLNRRTLKLEVIETLVLDEADEMLNMGFLEDIEKIISQVPENRQTLLFSATMP 185

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              + + +  + + D  KI  K      I    +     ++     +++  +  +   + 
Sbjct: 186 TAIKNIGIKFMKNPDHVKIKAKEMTADLIDQYYVRSKDYEKFDIMTRLLDVQTPELTIVF 245

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +  V+      E        IHG +S   + SV+ +FKNG   +L+AT 
Sbjct: 246 GRT--------KRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRAFKNGDLDILVATD 297

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 298 VAARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKGGMSVTFVTPN 346


>gi|219880759|gb|ACL51654.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Callithrix
           jacchus]
          Length = 654

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 148/379 (39%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I      K +   +     GSGKT   L+ + + +   G          
Sbjct: 197 PTPVQKHAIPII------KGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKG 250

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 251 NGRCGRRKQYPVSLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 309

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D+    G + Q  ++ ++ T P 
Sbjct: 310 ---GCHLLVATPGRLVDMMERGKIALDFCKYLVLDEADKMLDMGFEPQIRRIVEQDTMPP 366

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   +I +  +D+    
Sbjct: 367 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVIWVEDLDKRSFL 425

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L ++ + G+ +  +   +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 426 LDILGATGRDSLTLV-FVETKK------GADSLEDFLYHEGHACTSIHGDRSQRDREEAL 478

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 479 RQFRSGRSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 537

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 538 FFNEKNVNIAKDLLDLLVE 556


>gi|328876634|gb|EGG24997.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 806

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 142/384 (36%), Gaps = 46/384 (11%)

Query: 255 INVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            +         +  + F+ PT  Q  +    L+       M+ +   + GSGKTL  L+ 
Sbjct: 406 FSHFPSYIMSEIAVLGFTAPTSIQCQSWPIALKG----RDMIGL--AETGSGKTLAFLLP 459

Query: 314 MAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
               + A        G   +++ P   LA Q      K+  +++I    I G +P+  + 
Sbjct: 460 AIVHINAQPYLETGDGPIVLVLTPTRELAMQIQNECDKFGSSSKIKNCCIYGGVPKYQQA 519

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LT 415
           +AL         I++ T     D ++           L+L   D     G + +++  L 
Sbjct: 520 QALRS----GVEIVVATPGRLIDFLERGGTNLRRVTYLVLDEADRMLDMGFEDQIRKILG 575

Query: 416 QKATAPHVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEV 471
           Q       L+ +AT     ++L    L D    KI   E  A  K +   I    ++D+ 
Sbjct: 576 QIRPDKQTLMFSATWPKSVQSLAADFLVDPIQVKIGSAELSANHK-VTQHIEICEKMDKQ 634

Query: 472 IERLKVV--LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            +  + +  +  G K                +S V        +       IHG  +  +
Sbjct: 635 TKLFQYLKSIEPGAKCIIFL---------ETKSGVGMLARNMSYAGFKCEAIHGDKTQGE 685

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           ++  +  FK+G  + LIAT V   G+DV D   +I  +  +   + +H++ GR GR    
Sbjct: 686 RDFALSQFKDGKIQCLIATDVASRGLDVKDIKYVINYDFPNTIESYIHRI-GRTGRAGAT 744

Query: 590 SSCILLYHPPLSKNSYTRLSVLKN 613
            +   L+     + +   ++VL  
Sbjct: 745 GTAYTLFTLDDMRLASDLVTVLAE 768


>gi|269961856|ref|ZP_06176213.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
 gi|269833434|gb|EEZ87536.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
          Length = 526

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/343 (18%), Positives = 130/343 (37%), Gaps = 36/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  +L+          +     G+GKT    + +   +  G +       A
Sbjct: 23  TPSPIQAQAIPAVLEGKDV------MAAAQTGTGKTAGFTLPILERLSNGPRVRSNQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +  Y+++  +   ++ G +    +   L +     A +++ T  
Sbjct: 77  LVLTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRLRK----GADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLLDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRK-------ILDLLPKQRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +E+        KKA  +   I++     
Sbjct: 186 ATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPADVKKKAPMLVKLIKDGDWKQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R          + A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           GID+     ++           +H++ GR GR  E+   I L 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRI-GRTGRAGEVGKAISLV 347


>gi|70733057|ref|YP_262830.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf-5]
 gi|68347356|gb|AAY94962.1| ATP-independent RNA helicase DbpA [Pseudomonas fluorescens Pf-5]
          Length = 461

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 90/455 (19%), Positives = 175/455 (38%), Gaps = 54/455 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ +   T  Q  ++  IL+ M        I Q   GSGKT    I +   +     G
Sbjct: 21  LDSLGYAQMTPIQAQSLPVILKGMD------LIAQAKTGSGKTAAFGIGLLNPINPRYFG 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    I V  + G +    +  +LE      AHII+
Sbjct: 75  CQALVICPTRELADQVAKEVRRLARAEDNIKVLTLCGGVSFGPQIASLEH----GAHIIV 130

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTS 439
           GT    Q  ++   L+L  ++        + L +        ++    TP  R TL+ ++
Sbjct: 131 GTPGRIQQHLRKGSLVLDGLNTLVLDEADRMLDMGFYDAIEDII--EKTPSRRQTLLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
              + I ++  K       +TV       D  IE+    +S  ++   +   +   +   
Sbjct: 189 TYPVGIKQLASKFMRDP--QTVKAEAFHDDTQIEQRFYEISPEERMSAVTKVLHHFRPAS 246

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   + V E  + L     S++ + HG +   D++ V+  F N +  +L+AT V  
Sbjct: 247 CVAFCFTKQQVQETVDHLTAKGISAVGL-HGDLEQRDRDQVLAMFANRSTSVLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+    ++I           +H++ GR GR  E    + L  P  +  +     + K
Sbjct: 306 RGLDIDALDMVINVELARDSEIHIHRV-GRTGRAGEKGIAVSLVAPSEAHRAQAIEQLQK 364

Query: 613 NTEDG--------------------FLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPE 650
              +                       IA     + + G+ILG     +G+P   + +  
Sbjct: 365 APLNWDQVDNLKSQGGAPLQPPMSTLCIAGGRKDKVRPGDILGALTGDAGIPGAQVGKIA 424

Query: 651 LHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           + D  S + + R      L +  +   ++G+S+R+
Sbjct: 425 IFDFQSYVAVERTVVMQALQRLNN-GKIKGRSLRV 458


>gi|20373098|dbj|BAB91216.1| RNA helicase [Mesocricetus auratus]
          Length = 662

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 145/379 (38%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + A G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  +D+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDK-RSF 430

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 431 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 544 FFNERNINITKDLLDLLVE 562


>gi|227542566|ref|ZP_03972615.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227181764|gb|EEI62736.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 718

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 133/369 (36%), Gaps = 35/369 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q   I  +L           +     G+GKT    + + A ++      QA+++A
Sbjct: 132 TPSPIQARTIPALLDGRDV------VGLAQTGTGKTAAFALPIIARIDKSNRSPQALVLA 185

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  +++  +   I V  I G      +   L R     AHII+GT     
Sbjct: 186 PTRELALQVADAFQEFADHVGGINVLPIYGGQAYGIQLSGLRR----GAHIIVGTPGRVI 241

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRTL 435
           D ++   L        +L   DE    G Q+ +   L        V L +AT     R L
Sbjct: 242 DHLKKGSLDISHLDYLVLDEADEMLNMGFQEDVERILEDTPDKKQVALFSATMPNAIRRL 301

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D     +  +      I    + +   +++    +++     +A  I  +    
Sbjct: 302 SQQYLDDPYEVTVKAETRTNTNISQRYLNVAHRNKLDALTRILEVTEFEAMIIFVRT--- 358

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E           S   I+G ++   +E  +D  ++G   +L+AT V   G+
Sbjct: 359 -----KYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVATDVAARGL 413

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  H   + +H++ GR GR       IL   P   +   +   V   T 
Sbjct: 414 DVDRISHVLNYDIPHDTESYIHRI-GRTGRAGRTGEAILFVTPRERRMLRSIERVTNATL 472

Query: 616 DGFLIAEED 624
           +   +   D
Sbjct: 473 EEMQLPTVD 481


>gi|254425384|ref|ZP_05039102.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
 gi|196192873|gb|EDX87837.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
          Length = 570

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 131/347 (37%), Gaps = 43/347 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  Q   I  IL           I Q   G+GKT    + + + ++   +  QA+++A
Sbjct: 28  TPTPIQALTIPPILDGRD------IIGQAQTGTGKTAAFALPILSQIDISNSDPQALVLA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  + Y  +     V  I G      + K L R     AH+I+GT     
Sbjct: 82  PTRELALQVAEAFQSYASHLKGFHVLPIYGGQSYHVQLKQLRRA----AHVIVGTPGRVI 137

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL-T 438
           D I+   L L  +        DE  R G  + ++           +++ TP  R + L +
Sbjct: 138 DHIKRGTLKLDNLKFLVLDEADEMLRMGFIEDVEW----------VISQTPQSRQVALFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I KI +K         V       D + +R   V   G        +I E ++ 
Sbjct: 188 ATMPAAIRKIAQKYLNSPQELAVKNQSKTADTIRQRFWPV--SGYHKLDALTRILEVEDF 245

Query: 499 NFRSVVER-------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +   V  R        +   E    + A + G +    +E  ++  + G   +L+AT V 
Sbjct: 246 DGMIVFVRTKVATVELSEKLEARGYNTAPLSGDVPQNQRERTVERLRQGKLDILVATDVA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             G+DV   S +I  +  +   A +H++ GR GR       IL   P
Sbjct: 306 ARGLDVERISHVINYDMPYDPEAYVHRI-GRTGRAGREGEAILFVTP 351


>gi|313892323|ref|ZP_07825915.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
           UPII 345-E]
 gi|313119182|gb|EFR42382.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
           UPII 345-E]
          Length = 491

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 128/343 (37%), Gaps = 40/343 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+ AI   +Q          I Q   G+GKT    I +   ++    G QA++++
Sbjct: 25  EPSPIQKEAIPIAMQGKD------LIGQAQTGTGKTAAFGIPILQRIDTSKPGPQAIVLS 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I    Q   I    I G      + +AL++    + +II+ T     D
Sbjct: 79  PTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFRALKK----KPNIIVATPGRLMD 134

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
            ++   + L  V        DE    G    +            +M ATP   +TL  ++
Sbjct: 135 HMKRKTIDLSNVQIAVLDEGDEMVDMGFIDDI----------RTIMAATPKERQTLFFSA 184

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                I ++         I  +      ID +IE+  + L + +K   +C  ++ +    
Sbjct: 185 TMPAPIRELANSFLNEPEIVKIKAATVTID-LIEQEYIELPDRQKFDALCRLLDMQSPEL 243

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   +      +    S   +HG +S   ++SV+  FK GT   L+AT V   
Sbjct: 244 AIVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLVATDVAAR 303

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           G+D+   + +   +        +H++ GR GR  +        
Sbjct: 304 GLDISGVTHVYNFDMPQDPEIYVHRV-GRTGRAGKTGLATTFV 345


>gi|251796145|ref|YP_003010876.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247543771|gb|ACT00790.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 535

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 134/351 (38%), Gaps = 39/351 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           +  + F   T  Q+ +I   +           I Q   G+GKT    I +   +    + 
Sbjct: 17  ITELGFEESTPIQDKSIPIAMAG------SDMIGQAQTGTGKTAAFGIPLINKISINEER 70

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+IM P   LA Q  + I K T+   +    I G      + +AL++    +  IIIG
Sbjct: 71  IVALIMTPTRELAIQVADEIGKLTKYKGLRSLPIYGGQEIGRQIRALKK----KPQIIIG 126

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I    + L  V        DE    G  + +           +L       +
Sbjct: 127 TPGRLLDHINRKTIKLEDVQTVVLDEADEMLDMGFMEDI---------QSILKQVPEERQ 177

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++    +I K+ ++   + P    +I        I++    + E +K   +C  ++
Sbjct: 178 TLLFSATMPPNIQKLAQQFL-KNPEHVAVISKQVTAPTIQQNYFEVHERQKFEALCRLLD 236

Query: 494 EKK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +       F     R + L E           +HG +S   +++VM  F++G+  +L+A
Sbjct: 237 MESPELAIIFGRTKRRVDELSEGLQKRGYTADGLHGDLSQNQRDNVMRKFRDGSIDVLVA 296

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           T V   G+DV   + +I  +      + +H++ GR GR  +  S      P
Sbjct: 297 TDVAARGLDVSGVTHVINFDLPQDPESYVHRI-GRTGRAGKEGSAYSFVTP 346


>gi|88857246|ref|ZP_01131889.1| RNA helicase DeaD [Pseudoalteromonas tunicata D2]
 gi|88820443|gb|EAR30255.1| RNA helicase DeaD [Pseudoalteromonas tunicata D2]
          Length = 624

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 133/352 (37%), Gaps = 35/352 (9%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            + Q I      +PT  Q  AI  +L           + +   G+GKT    + + + ++
Sbjct: 17  PVLQAINEMGYITPTPIQSQAIPSLLAGKDV------LGEAQTGTGKTAAFGLPLLSRLD 70

Query: 320 AG---GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQ 375
           A     Q +++ P   LA Q  E +  + ++   + V  + G      + + L R     
Sbjct: 71  ADLKQPQMLVVCPTRELAIQVAEALTDFAKHIRGLFVATVYGGQSYTPQLRDLAR----G 126

Query: 376 AHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLL 425
             I++GT     D I+  +L L  +        DE    G  + ++    Q      +  
Sbjct: 127 PQIVVGTPGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWILNQIPDQTQMAF 186

Query: 426 MTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT P P + +    L D    KI  + + +  I      + RI + +   ++      
Sbjct: 187 FSATMPAPIKKITNQFLTDPIHVKIAVQKSDKPKITQKSWTVGRIGKTVGLERIAEVVDY 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            A  +  +         R+                + ++G M   D+E +++  KNG   
Sbjct: 247 DAMIVFVRT--------RNDTLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKNGRIN 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +LIAT V+  G+DV   + +I  +  H   + +H++ GR GR       IL 
Sbjct: 299 ILIATDVVARGLDVPRITHVINYDLPHDSESYVHRI-GRTGRAGREGEAILF 349


>gi|51892785|ref|YP_075476.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51856474|dbj|BAD40632.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 526

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 147/419 (35%), Gaps = 50/419 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q  AI  +LQ          I Q   G+GKT    + +   +  G    QA+++ 
Sbjct: 28  EPSPIQAQAIPALLQGKDV------IGQAQTGTGKTAAFGVPIVERLVPGQRAVQALVLT 81

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I K  ++ ++    I G      + ++L         ++IGT     D
Sbjct: 82  PTRELAIQVAEEITKIGRHARVKTIAIYGGQSIERQIRSLRF----GVDVVIGTPGRILD 137

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLT 438
            +    L L  V        DE    G  + +   L         LL +AT  P    L 
Sbjct: 138 HLGRSTLDLSQVRMVVLDEADEMLDMGFIEDIEKILQNTPAERQTLLFSATMPPEIRRLA 197

Query: 439 SLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                D   I+  P       I      +    +     +++  E  +      + +   
Sbjct: 198 GRYMRDPITISVTPQQLTVPQIDQYFCEVRPSFKTEALTRILDIENVERGICFCRTK--- 254

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               + V E   +L      +  I HG M+   +  VM  FK G  +LL+AT V   G+D
Sbjct: 255 ----KGVDELVEALQARGYQAEGI-HGDMNQAQRNRVMSRFKEGYIELLVATDVAARGLD 309

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           + D + +   +      + +H++ GR GR     + I L  P           V+K    
Sbjct: 310 ISDVTHVFNYDIPQDPESYVHRI-GRTGRAGRTGTAITLVTPREFPQLRLIERVIKA--- 365

Query: 617 GFLIAEEDLKQRKEGEIL---GIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ-DP 671
                     QR+    L     KQ    K  + +    D L E  R+ A+ +L + DP
Sbjct: 366 --------RLQRRPVPTLSDVAEKQREQLKERLIKILEEDKLGEF-RELAEDLLAEYDP 415


>gi|167895799|ref|ZP_02483201.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 7894]
          Length = 282

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 18/236 (7%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   S 
Sbjct: 53  KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-SE 105

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 106 IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 164

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 165 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 223

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFK 248
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +
Sbjct: 224 LDVPPLADAVRMLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERR 279


>gi|134299771|ref|YP_001113267.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134052471|gb|ABO50442.1| ATP-dependent RNA helicase DbpA [Desulfotomaculum reducens MI-1]
          Length = 532

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 139/368 (37%), Gaps = 24/368 (6%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + ++ +I   +       PT  Q+ A+  +L           I Q   G+GKT    I M
Sbjct: 13  LELDRRIVDGLKEMGFEEPTPIQQLAVPQVLAGYD------MIGQAQTGTGKTAAFSIPM 66

Query: 315 AAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
              +       Q +I+ P   LA Q  E I K  + ++I V  I G      + ++L   
Sbjct: 67  IERLNPRKREVQTIIITPTRELAIQVAEEISKIGRFSRIKVLPIYGGQSIERQIRSLRL- 125

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
                 +++GT     D ++   L +  VD        + L +        ++  T    
Sbjct: 126 ---GVQVVVGTPGRLLDHLRRQTLKVDQVDMVILDEADEMLDMGFIEDIEEIIRHTPA-E 181

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            +TL+ ++    +I ++ ++        TV      + + IE++     E  K   +C  
Sbjct: 182 RQTLLFSATMPQEIIRLAQQYMTDPKYVTVSKTNLTVPQ-IEQVFYEAPEKNKLEALCRI 240

Query: 492 IEEKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           ++              R V E    L     ++ A+ HG +S   + +VM  F++   +L
Sbjct: 241 LDISDISQGILFCRTKRGVDELVAGLQARGFAAAAL-HGDLSQQQRNTVMRQFRSSEVEL 299

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT V   G+D+   S +I  +        +H++ GR GR       I +  P   +  
Sbjct: 300 LVATDVAARGLDIEGVSHVINYDIPQDPEFYVHRI-GRTGRAGRSGVAITIISPREYRQL 358

Query: 605 YTRLSVLK 612
               ++ K
Sbjct: 359 RQIENITK 366


>gi|242002440|ref|XP_002435863.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215499199|gb|EEC08693.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 494

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/374 (17%), Positives = 133/374 (35%), Gaps = 48/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQ------AV 325
           PT  Q+ AI  IL       +   +     GSGKT   L+ +   V E G        A+
Sbjct: 107 PTPVQKHAIPIILA------KRDLMACAQTGSGKTAAFLVPILNQVFEDGPPKNQYPLAL 160

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I++P   LA Q YE   K+   +++   ++ G      + K L+R      H+++ T   
Sbjct: 161 ILSPTRELACQIYEEACKFAYRSRVRPCVVYGGADPMQQMKDLDR----GCHLLVATPGR 216

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D ++  K        L+L   D     G + +++          +        +TL+ 
Sbjct: 217 LVDMMERGKVSLELVRYLVLDEADRMLDMGFEPQIRRIVLEDNMPPVGQ-----RQTLMF 271

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE---- 493
           ++     + ++  K      I   +  +    E I +  V + E  K  ++   +     
Sbjct: 272 SATFPKKVQELARKFLD-NYIFLAVGRVGSTSENITQKVVWVEEHDKRSFLLDLLNAAGL 330

Query: 494 ------------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                              +   +            +  IHG  S  ++E  + SF+ G 
Sbjct: 331 RTGSQAALSDSLTLTFVETKKGADSLEHFLMKEGYPVTSIHGDRSQREREDALWSFRKGH 390

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++    
Sbjct: 391 TPILVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATSFFNEKNR 449

Query: 602 KNSYTRLSVLKNTE 615
             +   + ++  T+
Sbjct: 450 NMALDLVELITETK 463


>gi|166014135|gb|ABY77970.1| vasa [Thunnus orientalis]
          Length = 644

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/404 (18%), Positives = 140/404 (34%), Gaps = 59/404 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 230 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQQLMADGVAASRFSEL 283

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K+   T +   ++ G +   H+ + +ER  +    ++
Sbjct: 284 QEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREIERGCN----VV 339

Query: 380 IGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L      ++DE  R                    M +    +T
Sbjct: 340 CGTPGRLLDMIGRGKVGLSKLRYLVLDEADRMLDMGFEP--DMRRLVGSPGMPSKENRQT 397

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI ++         +   +  +      +E+  + +++  K   +   ++ 
Sbjct: 398 LMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKT 457

Query: 495 ------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +           IHG     ++E  +  F++G C +L+AT
Sbjct: 458 TGTERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVAT 517

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--------- 599
           +V   G+D+ D   ++  +  +     +H++ GR GR       +  Y P          
Sbjct: 518 SVAARGLDIPDVQHVVNFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFYDPDADGQLARSL 576

Query: 600 ---LSKNSYTRLSVLKNT------EDGFLI-----AEEDLKQRK 629
              LSK      S L+ +        GF       A  D ++R 
Sbjct: 577 VTVLSKAQQEVPSWLEESAFSGPATTGFNPPRKNFASTDSRKRG 620


>gi|15896005|ref|NP_349354.1| DEAD-box ATP dependent DNA helicase [Clostridium acetobutylicum
           ATCC 824]
 gi|15025785|gb|AAK80694.1|AE007772_6 ATP dependent RNA helicase DeaD, superfamily II [Clostridium
           acetobutylicum ATCC 824]
 gi|325510158|gb|ADZ21794.1| ATP dependent RNA helicase DeaD, superfamily II [Clostridium
           acetobutylicum EA 2018]
          Length = 481

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 142/371 (38%), Gaps = 42/371 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           +  + +  P+  QE  I  IL           I +   GSGKT    I +   +E     
Sbjct: 19  IEKLGYKKPSSIQEKVIPVILNGKD------IIAKAKTGSGKTAAFAIPVCEKIELEERE 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++AP   LA Q  E      +  ++    I G  P +++ + L++    + HI++G
Sbjct: 73  PQVLVLAPTRELAYQIKEDFLNIGRFKRLRCISIFGKEPISNQIRELKQ----RVHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+   L L  V        DE    G  +++   L +     +  L +AT  
Sbjct: 129 TPGRVLDHIERGTLNLEKVKYFIIDEADEMLNMGFIEQVESILIKMPKNKNTFLFSATLP 188

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              ++L+     +   I  +  G+    I  V   +   ++     KV+  E   +  I 
Sbjct: 189 EEIVMLSKKYMKNFENIEVQNEGKTKGGIHQVYYEVESREKFDLLKKVIYKEVPGSSIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         ++ VE      ++   S   IHG M   ++ +VM++FK G    LIAT 
Sbjct: 249 CRT--------KNNVEDVLVKMKNMKFSCMAIHGGMLQENRIAVMNAFKRGEFTFLIATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GIDV + + +I  +      + +H++ GR GR       I                
Sbjct: 301 VAARGIDVENVTHVINYDIPMEKESYIHRI-GRTGRMGNKGIAITFVTS-------KEER 352

Query: 610 VLKNTEDGFLI 620
            LK  E+ F +
Sbjct: 353 FLKEIEEQFSL 363


>gi|291222373|ref|XP_002731189.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 670

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 88/432 (20%), Positives = 142/432 (32%), Gaps = 47/432 (10%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-- 269
           PR  K+F    P   R    EL A Q    +  K       +    E      IL  +  
Sbjct: 78  PRFEKNFYREHPDVARREQHELEAFQNEKQITTKGRGVPKPVFHFGECSFPDYILATVKR 137

Query: 270 -PF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------- 319
             F  PT  Q       L           +     GSGKT+  ++     +         
Sbjct: 138 NNFKEPTAIQAQGWPMALTGRDV------VGIAQTGSGKTIAYMLPAIVHINHQPFLDRG 191

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G   +++ P   LAQQ       + ++++I    + G  P+  + + LER       I 
Sbjct: 192 DGPICLVLCPTRELAQQVAHVAVDFGKSSRIKNTCVYGGAPKGSQIRDLER----GVEIC 247

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT 429
           I T     D ++  K        L+L   D     G   Q R  + Q      VL+ +AT
Sbjct: 248 IATPGRLLDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 307

Query: 430 PIP--RTLVLTSLGDIDISKITEKP----AGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
                R L    L D     I             I  V     + D++I  L+ ++ E +
Sbjct: 308 WPKEVRGLAEDFLKDYLQVNIGALSLSANHNILQIVDVCQEHEKDDKLIRLLEEIMQENE 367

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               I            +   +               IHG  S  +++ V+  F+ G   
Sbjct: 368 NKTLIFV--------ETKKRTDDLTRRMRRDGWPAMCIHGDKSQPERDWVLSEFRAGNAP 419

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+DV D   +I  +        +H++ GR  R E   +    +     K 
Sbjct: 420 ILLATDVASRGLDVTDIKFVINFDYPSSTEDYIHRI-GRTARSERTGTAYTFFTAGNMKQ 478

Query: 604 SYTRLSVLKNTE 615
           +   + VL+   
Sbjct: 479 APELIDVLREAN 490


>gi|18410973|ref|NP_567067.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana]
 gi|42572719|ref|NP_974455.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana]
 gi|79315530|ref|NP_001030884.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana]
 gi|75329861|sp|Q8LA13|RH11_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 11
 gi|21593670|gb|AAM65637.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|332646270|gb|AEE79791.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
 gi|332646271|gb|AEE79792.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
 gi|332646272|gb|AEE79793.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
          Length = 612

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 61/372 (16%), Positives = 134/372 (36%), Gaps = 43/372 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------- 323
           PT  Q  AI  +L           +     GSGKT      + + +              
Sbjct: 174 PTPVQRHAIPILLA------ERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRA 227

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               AVI++P   LA Q ++  KK++  T + V +  G  P   + + LER       I+
Sbjct: 228 VYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELER----GCDIL 283

Query: 380 IGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T     D ++  ++ + ++     DE  R          Q       + M    + +T
Sbjct: 284 VATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEP--QIRKIVEQMDMPPRGVRQT 341

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I ++         I   +  +    ++I +    + E  K   +   +  
Sbjct: 342 MLFSATFPSQIQRLAADFM-SNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHA 400

Query: 495 KKESNFRSV-----------VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           ++E+  +              +   +           IHG  +  ++E  + SFK G   
Sbjct: 401 QRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTP 460

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+D+   + ++  +  +     +H++ GR GR  +       ++   ++ 
Sbjct: 461 ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI-GRTGRAGKSGIATAFFNENNAQL 519

Query: 604 SYTRLSVLKNTE 615
           + +   +++   
Sbjct: 520 ARSLAELMQEAN 531


>gi|329891295|ref|ZP_08269638.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
 gi|328846596|gb|EGF96160.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
          Length = 589

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/381 (18%), Positives = 141/381 (37%), Gaps = 35/381 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q  AI D+++          +     G+GKT    + +   +            +
Sbjct: 26  KPTPIQAKAIPDVMKGKD------LLGIAQTGTGKTAAFALPILHRLAENRVAPRPRTTR 79

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I++P   LA Q  +  K+Y  +    V +I G +    + +AL++       +++   
Sbjct: 80  ALILSPTRELATQIGDSFKQYGAHLGFRVAVIFGGVKYGAQERALQQ----GLDVLVAAP 135

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D IQ   L L   +        Q L L        ++        + L  ++    
Sbjct: 136 GRLLDHIQQKTLDLSTCEIFVLDEADQMLDLGFIKPIRQIVSRIPA-KRQNLFFSATMPS 194

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--- 500
           +I K+      + P+K  + P     E I++  + + +GKK   +     +   +     
Sbjct: 195 EIGKLAG-ELLKDPVKVQVTPQATTVERIKQSVIWVEQGKKRALLTELFSDPAYTRCLVF 253

Query: 501 ---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++  +  E        IHG  S   +E  +++FKNG  ++L+AT +   GIDV
Sbjct: 254 TKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERALEAFKNGKLRVLVATDIAARGIDV 313

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH-------PPLSKNSYTRLSV 610
              + ++     +   A +H++ GR  R  +  + I             + K +  ++  
Sbjct: 314 DKVTHVVNFELPYVPEAYVHRI-GRTARAGKDGTAISFVAGDEMKLLKDIEKVTRQKIPA 372

Query: 611 LKNTEDGFLIAEEDLKQRKEG 631
           +    D   +A+ D      G
Sbjct: 373 IDRRNDK-ALAQLDASIMSAG 392


>gi|261251247|ref|ZP_05943821.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
 gi|260938120|gb|EEX94108.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
          Length = 419

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 144/386 (37%), Gaps = 51/386 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           L  + F  PT+ Q+ AI  +L+          +     G+GKT    + +   +      
Sbjct: 18  LEKLNFKLPTEVQKHAIPHVLEGQDV------LAGAQTGTGKTAAFGLPIIQRLLESETT 71

Query: 324 ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                    A+++ P   LAQQ ++ I  Y Q+T I V    G      + + L++    
Sbjct: 72  RDIQSNDVLALVLVPTRELAQQVFDNITLYAQDTIIKVVTAYGGTSMNVQTRNLDQ---- 127

Query: 375 QAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
              I+I T     D +            L+L   D     G    +K   K         
Sbjct: 128 GCDILIATPGRLLDHLFCKNINLTKTQYLVLDEADRMLDMGFMPDIKRILKRCNEE---- 183

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +T+  ++  D  I  I  K    +P++  + P N   E ++++   + + +KA 
Sbjct: 184 -----RQTMFFSATFDKRIKTIAYK-MLSEPVEVQVTPSNSTAETVKQMVYPVDKKRKAE 237

Query: 487 WICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +   I  +           +   +      +      A I+G  S   ++  +D FK+G
Sbjct: 238 LLAYLIGSRNWQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSG 297

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             + LIAT V   G+D+     ++  +  +     +H++ GR GR  +    + L    +
Sbjct: 298 QVRALIATDVAARGLDIQQLEQVVNFDMPYKAEDYVHRI-GRTGRAGKEGFAVSL----M 352

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLK 626
           S++    L  ++   DG  + +E L+
Sbjct: 353 SRDEEYLLEAIERLLDG-KLPQEWLE 377


>gi|262047224|ref|ZP_06020182.1| helicase [Lactobacillus crispatus MV-3A-US]
 gi|260572469|gb|EEX29031.1| helicase [Lactobacillus crispatus MV-3A-US]
          Length = 494

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 132/348 (37%), Gaps = 38/348 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE  I   LQ          I Q   G+GKT    + +   ++      QAV
Sbjct: 20  GFEEATPIQEQTIPLALQGKDV------IGQAQTGTGKTAAFGLPILQMIDKKEKAIQAV 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E + +  ++    V+++ G      + ++L+   H    I++GT   
Sbjct: 74  IIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK---HHVPSILVGTPGR 130

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D ++   + L  V        DE    G  Q +           +L  A    +TL+ 
Sbjct: 131 LLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDI---------ESILKYAKNRQQTLLF 181

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I +I EK     P    I       ++IE+  V   E +K   +C  I+ +  
Sbjct: 182 SATMPKPILRIGEKFMDH-PEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRLIDVQGP 240

Query: 497 --ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L     +     A IHG +S   + SV+  F+ G   +L+AT V 
Sbjct: 241 DLALVFGRTKRRVDELTRGLQARGYNAAEIHGDLSQARRMSVLKRFREGKLDILVATDVA 300

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 301 ARGLDISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGQNGISVTFVTPN 347


>gi|188575689|ref|YP_001912618.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520141|gb|ACD58086.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 614

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 137/369 (37%), Gaps = 35/369 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q + I  +L           + Q   G+GKT    + + +  +      QA+++A
Sbjct: 11  SPSPIQAATIPALLAGRDV------LGQAQTGTGKTAAFALPVLSNADLNQVKPQALVLA 64

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY +      V  + G  P A +  AL+R      H+++GT     
Sbjct: 65  PTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR----GVHVVVGTPGRVI 120

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP--RTL 435
           D +        Q   L+L   DE  R G    ++  L +      V L +AT  P  R +
Sbjct: 121 DHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPPAIRRI 180

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D     I  K      I+     ++ + ++    +++  E      I  +    
Sbjct: 181 AQTYLKDPAEVIIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFART--- 237

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E      +    + A I+G M    +E  +   K+G   +L+AT V   G+
Sbjct: 238 -----KAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGL 292

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL           +     +   
Sbjct: 293 DVERISHVLNYDIPYDTESYVHRI-GRTGRAGRTGDAILFVTLREKGMLRSIERATRQPI 351

Query: 616 DGFLIAEED 624
           +   +   D
Sbjct: 352 EEMQLPSVD 360


>gi|283779400|ref|YP_003370155.1| DEAD/DEAH box helicase domain-containing protein [Pirellula staleyi
           DSM 6068]
 gi|283437853|gb|ADB16295.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
          Length = 458

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 144/391 (36%), Gaps = 37/391 (9%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
                  L    +  PT  Q   I   L+       +  + Q   G+GKT   +I +   
Sbjct: 20  SDQMMAALEKAGYEYPTPIQAGLIPRALEG------VDVVGQARTGTGKTASFVIPILEL 73

Query: 318 VE-----AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           ++        QA+I+ P   LA Q  + + K ++  +I    + G  P   +   L++  
Sbjct: 74  LDIERGAPTPQALILVPTRELAVQVRDEVVKLSEGLKINCAAVYGGKPIKSQVDKLKK-- 131

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
               H+++GT     D I    +    + E        R+           +L       
Sbjct: 132 --GCHVVVGTPGRVLDHIARGTIDFTHI-ECVVLDEADRMLDIGFRPDIERILKRCPRER 188

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+L++     I+K+ ++    +P      P +   + IE+    +   +K   +   +
Sbjct: 189 QTLLLSATVPPPIAKLAQRYM-YEPEMLNFSPADVSVDTIEQKYFTVEHDRKFDLLMKLL 247

Query: 493 EEKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             ++           R   + +  L +    + A IHG +S   ++ VM  F++G+ + L
Sbjct: 248 LREEPKQAIVFCRTKRGTDKVYQKLTKKL-GNTAAIHGDLSQGQRDRVMAGFRDGSVRYL 306

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP----PLS 601
           +AT VI  GIDV   S I+  +   F    +H++ GR GR            P     L+
Sbjct: 307 VATDVIGRGIDVSTVSHIVNFDIPVFCDDYVHRV-GRTGRMGREGVAYTFVCPDEGHELT 365

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
           +       +LK  E        D +    GE
Sbjct: 366 RIEERINKLLKRDE------MRDFEPVGYGE 390


>gi|221123619|ref|XP_002156523.1| PREDICTED: PL10-related protein CnPL10 [Hydra magnipapillata]
          Length = 628

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 69/374 (18%), Positives = 134/374 (35%), Gaps = 46/374 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------E 319
            PT  Q+++I  I        +   +     GSGKT   L+ + + +             
Sbjct: 193 KPTPVQKNSIPIIKA------KRDLMACAQTGSGKTAAFLVPILSRIFEEGPFENPSNVR 246

Query: 320 AGGQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
            GG+      A+++AP   LA Q Y+  +K+   + I   ++ G    + + + ++R   
Sbjct: 247 QGGKKKQYPIALVLAPTRELASQIYDESRKFVYRSCIRPCVVYGGADVSTQMRDIDR--- 303

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+++ T     D IQ  K+ L  +     DE  R          Q         M  
Sbjct: 304 -GCHLLVATPGRLVDMIQRGKVGLECIKFLVLDEADRMLDMGFEP--QIREIVEKCDMPR 360

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++    +I  +         I   +  +    E I +  V + E  K  ++
Sbjct: 361 TGERQTLMFSATFPKEIQMLARDFLD-NYIFLAVGRVGSTSENITQKVVWVEEHDKREFL 419

Query: 489 CPQIE----EKKESNFRSVVERFNSLHEHFT-----SSIAIIHGRMSDIDKESVMDSFKN 539
              +     +     F       ++L +             IHG     ++E  + SF+ 
Sbjct: 420 LDLLNASGPDSLTLVFVETKRGADALEQFLFRCPENYHATSIHGDRHQKEREQALASFRV 479

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GT  +L+AT V   G+D+ +   +I  +        +H++ GR GR          ++  
Sbjct: 480 GTTPILVATAVAARGLDIPNVKHVINFDMPSDIEEYVHRI-GRTGRVGHTGLATSFFNDK 538

Query: 600 LSKNSYTRLSVLKN 613
               +   + +L  
Sbjct: 539 NRNVARDLMDILAE 552


>gi|162451805|ref|YP_001614172.1| hypothetical protein sce3532 [Sorangium cellulosum 'So ce 56']
 gi|161162387|emb|CAN93692.1| deaD2 [Sorangium cellulosum 'So ce 56']
          Length = 478

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 128/347 (36%), Gaps = 38/347 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +PT  Q+ AI  IL+          +     G+GKT    + +   +         G + 
Sbjct: 23  APTPIQQQAIPPILEG------NDLLGCAQTGTGKTAAFALPILQRLAQSGGPRQGGLRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E    Y +N  +   ++ G + Q  + +AL R       +++ T  
Sbjct: 77  LVLTPTRELAAQVAESFTTYGKNLGLRTAVVFGGVGQRPQMEALRR----GVDVLVATPG 132

Query: 385 LFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D        + +L  +++DE  R      +           +L       +TL+ ++
Sbjct: 133 RLLDLCSQGIAPFGRLDTLVLDEADRMLDMGFIHDI------RRVLAMLPERRQTLLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---- 495
               DI K+      R P++  +  I    E I++  V +    K   +   +++     
Sbjct: 187 TMPPDILKLANS-ILRSPVRVEVARIATTAENIDQRVVFVERSDKRAMLEHVLKDPALRR 245

Query: 496 ---KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                            L      ++AI HG  S   +E  + SFK GT  +L+AT +  
Sbjct: 246 AIVFTRTKHGANRVVQQLSRARIEAVAI-HGNKSQGARERALASFKQGTTSVLVATDIAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            GID+ D S +I  +  +   + +H++ GR  R       +      
Sbjct: 305 RGIDIDDISHVINYDLPNIPESYVHRI-GRTARAGASGVALSFCDSE 350


>gi|156405006|ref|XP_001640523.1| predicted protein [Nematostella vectensis]
 gi|156227658|gb|EDO48460.1| predicted protein [Nematostella vectensis]
          Length = 407

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ AIK IL+          I Q   G+GKT    I++  A++      QA++++
Sbjct: 56  KPSAIQQRAIKPILKGRDV------IAQAQSGTGKTATFSISVLQAIDTQLREPQALVLS 109

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       HI+ GT     D
Sbjct: 110 PTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQ----HIVSGTPGRVFD 165

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 166 MIRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLSATLPHEILEMT 225

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 226 SKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 278

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           ++A +HG M   ++E++M  F+ G  ++LI+T V   G+D
Sbjct: 279 FCNTKRKVDWLTEKMREANFTVASMHGDMPQKEREAIMKDFRAGQSRVLISTDVWARGLD 338

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S++I  +  +     +H++ GR GR       I        +             D
Sbjct: 339 VQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQID 397

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 398 EMPMNVADL 406


>gi|153830993|ref|ZP_01983660.1| transcription-repair coupling factor [Vibrio cholerae 623-39]
 gi|148873518|gb|EDL71653.1| transcription-repair coupling factor [Vibrio cholerae 623-39]
          Length = 381

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/251 (32%), Positives = 125/251 (49%), Gaps = 17/251 (6%)

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             D+S I   PA R  IKT +   +    + E +   +  G + Y++  Q+E   +    
Sbjct: 1   MRDLSIIATPPARRLAIKTFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKV--- 56

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
                   L     + I + HG+M + + E VM+ F +    LL+ TT+IE GIDV  A+
Sbjct: 57  --AADLEKLVPE--ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTAN 112

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--LSKNSYTRLSVLKNTED--- 616
            II++ A+  GLAQLHQLRGRVGR    +   LL  PP  ++K++  RL  + + ED   
Sbjct: 113 TIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGA 172

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTSV 676
           GF +A  DL+ R  GE+LG +QSG          L+  +LE A +  K    ++P L  +
Sbjct: 173 GFTLATHDLEIRGAGELLGEEQSGQI--QSVGFTLYMEMLEQAVEALKS--GKEPALDDL 228

Query: 677 RGQSIRILLYL 687
             +   + + L
Sbjct: 229 LREQTEVEMRL 239


>gi|120405422|ref|YP_955251.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119958240|gb|ABM15245.1| ATP-dependent RNA helicase CsdA [Mycobacterium vanbaalenii PYR-1]
          Length = 564

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 69/336 (20%), Positives = 132/336 (39%), Gaps = 22/336 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +P+  Q + I  IL           +     G+GKT    I + + ++      QA+++A
Sbjct: 35  TPSPIQAATIPAILDG------SDVVGLAQTGTGKTAAFAIPILSKIDTDSRNTQALVLA 88

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   +Y  + ++ V  I G      +   L+R     A +++GT     D
Sbjct: 89  PTRELALQVAEAFGRYGAHLRVNVLPIYGGASYVPQLSGLKR----GAQVVVGTPGRVID 144

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++   L L  +D        + L++        +L  T     +  + ++     I KI
Sbjct: 145 HLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADT-PEYKQVALFSATMPPAIKKI 203

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------RS 502
           T K     P++  +    +  E I +   ++S  +K   +   +E ++          + 
Sbjct: 204 TAKYL-HDPVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLEVEQGDAMIVFVRTKQ 262

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             E           + A I+G +    +E  +   K+GT  +L+AT V   G+DV   S 
Sbjct: 263 ATEEVAEKLRSRGFAAAAINGDIPQAVRERTISQLKDGTIDILVATDVAARGLDVERISH 322

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ++  +  H   + +H++ GR GR     + +L   P
Sbjct: 323 VVNFDIPHDPESYVHRI-GRTGRAGRSGTALLFVTP 357


>gi|313205949|ref|YP_004045126.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445265|gb|ADQ81620.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315022262|gb|EFT35290.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
           RA-YM]
 gi|325336611|gb|ADZ12885.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
           RA-GD]
          Length = 371

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/355 (20%), Positives = 131/355 (36%), Gaps = 25/355 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAV 325
           +PT  QE AI  IL+          I     G+GKT    I +   +          +A+
Sbjct: 23  TPTAIQEKAIPTILEGRD------LIGCAQTGTGKTAAFSIPLLQILSETPKKGKSVRAL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E I++Y++   I    I G +PQ  + +AL +       I+I T   
Sbjct: 77  ILTPTRELAIQIQENIEQYSKFLNIKHLSIFGGVPQGKQERALNQ----GVDILIATPGR 132

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D +Q   L L  + E        R+           +L       +TL  ++     I
Sbjct: 133 LLDLMQQGLLSLSQI-EILVLDEADRMLDMGFVNDVKKILTKVPKKRQTLFFSATMPNSI 191

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SN 499
            +  E      P +  + P++   + IE+    + +  K   +   +++  E      + 
Sbjct: 192 RQFAETILD-NPAEVTVTPVSSTAKTIEQSVYFVEKNDKTNLLINILKDTSELRSLIFTR 250

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   +R            A IHG  S   ++  +  FK+    +LIAT +   GID+ +
Sbjct: 251 TKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKDFKDNRISVLIATDIAARGIDIDE 310

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
              +I     +     +H++ GR GR     + I        K+      ++  T
Sbjct: 311 LPQVINYELPNVPETYVHRI-GRTGRAGTSGNAISFCGTEERKDLKNIQKLIGFT 364


>gi|308071529|ref|YP_003873134.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681]
 gi|305860808|gb|ADM72596.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681]
          Length = 481

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/387 (21%), Positives = 152/387 (39%), Gaps = 46/387 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           L ++ +  PT+ Q   I   L+      +   + +   GSGKT    I +   V   E  
Sbjct: 19  LSSLGYETPTEIQTEVIPVALE------KKDLVAKSQTGSGKTAAYGIPICELVDWNENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E I    +  +I    + G  P   ++  L++    + H+ +G
Sbjct: 73  PQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKAELKQ----RTHVAVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L L  +        DE    G  +Q   + Q   +  V ++ +   P
Sbjct: 129 TPGRVLDHIERGTLSLDRIAYLVIDEADEMLNMGFIEQVQSIIQALPSDRVTMLFSATFP 188

Query: 433 R---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
               TL    + D    +I         I   +I +   D++     +++ E   +  I 
Sbjct: 189 EDVATLSRKYMNDPVKIEIKATGITTATIDHSLIQVKESDKLALLQDLLIVENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  ++ FR++ +               IHG M   ++  VM++F+ G  + LIAT 
Sbjct: 249 CRTQENVDTLFRALAD--------LEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLIATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR  +    I L  P   +      +
Sbjct: 301 VAARGIDITNITHVINYDIPLEKESYVHR-TGRTGRAGKTGKAISLITPKDGRRLADIEA 359

Query: 610 VLKNTEDGFLI------AEEDLKQRKE 630
            +     GF I      +EE +  R+E
Sbjct: 360 YI-----GFAIPQVKAPSEEAVDLRRE 381


>gi|165933600|ref|YP_001650389.1| ATP-dependent RNA helicase [Rickettsia rickettsii str. Iowa]
 gi|165908687|gb|ABY72983.1| ATP-dependent RNA helicase [Rickettsia rickettsii str. Iowa]
          Length = 414

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 137/342 (40%), Gaps = 35/342 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQAVIMAPI 330
            PT+ Q+ +I   +           +     GSGKTL  L+ +  + ++    A+I+ P 
Sbjct: 25  EPTEIQKQSIPVAMAG------SDILASSQTGSGKTLAYLLPLIDSFIKNKTTALILVPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q +  + K T + +I   ++ G  P   +   L++       +IIGT     D +
Sbjct: 79  RELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQLKK----NPKVIIGTPGRIIDHL 134

Query: 391 QYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               L        +L  +D     G++++L+   K               + L+ ++   
Sbjct: 135 NRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEK---------RQVLMFSATMP 185

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----E 497
             I  +++K     P++  +   N+    I++  + +S+ +K   +  Q+  ++      
Sbjct: 186 KHIIAVSQKYLN-NPVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLGHREGSVIIF 244

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++   + ++   +   IHG +S   +E V+ SF+    ++++AT V   G+D+
Sbjct: 245 VKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDI 304

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
                +I  +        LH++ GR GR       +    P 
Sbjct: 305 PHTQHVINYDLPMCPEDYLHRI-GRTGRAGATGHALSFISPD 345


>gi|163786067|ref|ZP_02180515.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales
           bacterium ALC-1]
 gi|159877927|gb|EDP71983.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales
           bacterium ALC-1]
          Length = 436

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 137/359 (38%), Gaps = 38/359 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L+          +     G+GKT    + +   +           +A
Sbjct: 23  TPSPIQAKAIPPVLE------EKDVLASAQTGTGKTAGFTLPLLHLLSQRPVQKHRPIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q +  +K+Y++   I   +I G + Q  +   + +       +++ T  
Sbjct: 77  LILTPTRELAAQVHTNVKEYSEFLNIKSTVIFGGVNQKPQVATIRK----GVDVLVATPG 132

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT-LVLT 438
              D      +   ++ + ++DE  R      L+  ++       +M   P  R  L+ +
Sbjct: 133 RLIDLESQGLLSLKRVEIFVLDEADRMLDMGFLRDIER-------VMKLMPDKRQNLMFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    DI K+        P+K    P N   EVI++    +++GKK   I   I E    
Sbjct: 186 ATFSKDIKKLAYSILN-NPVKVEATPENTAVEVIDQKVYRVAKGKKTGLIIKLISEGNWK 244

Query: 499 N---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F       N L +   S+    A IHG  S   +   +  FK+G  ++L+AT +  
Sbjct: 245 QVLVFTRTKHGANKLCKKMISAGITAAAIHGNKSQGARTKALAGFKSGKVRVLVATDIAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            G+D+     ++     +     +H++ GR GR       I L     +    +   ++
Sbjct: 305 RGLDIPLLPHVVNYEIPNISEDYVHRI-GRTGRAGASGEAISLVSADETTYLRSIEKLI 362


>gi|307824650|ref|ZP_07654874.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307734304|gb|EFO05157.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 596

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/346 (22%), Positives = 135/346 (39%), Gaps = 41/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q   I  +LQ          + Q   G+GKT    + + + ++      Q +++A
Sbjct: 31  TPSPIQAQTIPLLLQGKDV------LGQAQTGTGKTAAFALPILSRIDLKQKDPQVLVLA 84

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  ++Y  +     V  I G      + + L+R     AH+++GT     
Sbjct: 85  PTRELAIQVAEAFQRYAAHLKGFHVLPIYGGQDYTTQLRQLKR----GAHVVVGTPGRVM 140

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPI--PRTL 435
           D ++   L        +L   DE  R G    ++    Q      + L +AT     R +
Sbjct: 141 DHMRKGTLNLKGLGFLVLDEADEMLRMGFIDDVEWILDQIPEKRQIALFSATMPSVIRKI 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTV---IIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
               L + +   I    A  + I+     +  ++++D +   L+    +G   +      
Sbjct: 201 AQQYLNEPEHITIKVTTASAENIRQRYWLVSGVHKLDALTRILEAETFDGMIIFV----- 255

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                    S VE    L E    S A I+G MS   +E  + + KNG   +LIAT V  
Sbjct: 256 -----RTKTSTVELAEKL-EARGYSAAAINGDMSQALRERAIANLKNGKLDILIATDVAA 309

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G+DV   + ++  +  +   + +H++ GR GR       IL   P
Sbjct: 310 RGLDVDRITHVVNYDIPYDTESYVHRI-GRTGRAGRTGDAILFIAP 354


>gi|226949308|ref|YP_002804399.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226844168|gb|ACO86834.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 376

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/369 (21%), Positives = 130/369 (35%), Gaps = 39/369 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE +I      M  KN    I +   G+GKTL  L+ M   +       Q +I+ 
Sbjct: 24  EPTPIQEESI------MFIKNGNDVIAEAQTGTGKTLAFLLPMFENISPDINAIQGLIIT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  +   + +    G      + K L        H++I T     D
Sbjct: 78  PTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKL----KNNIHLVIATPGRLLD 133

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPRT--LV 436
            +            L+L   DE    G +   R  +         L  +AT       L 
Sbjct: 134 HLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATMNSEVKKLA 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
             ++ D  +  I ++    K IK V+I      +  +  K++  E      I  +     
Sbjct: 194 YKNMRDPRLIIIEKEEVTLKNIKQVLIETTDRRKQEDLCKILDEENPFMAIIFCRT---- 249

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+           +   +HG ++   +E +M SFKN   + LIAT V   G+D
Sbjct: 250 ----KRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + +   +      + +H++ GR GR  E     L   P   +        +K    
Sbjct: 306 ITGVTHVFNYDIPENAESYIHRI-GRTGRAGEKGYTFLFVAPKDEQTLSIIEREIK---- 360

Query: 617 GFLIAEEDL 625
            F I+ + L
Sbjct: 361 -FKISRKTL 368


>gi|17987318|ref|NP_539952.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str.
           16M]
 gi|225852449|ref|YP_002732682.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis ATCC 23457]
 gi|254689182|ref|ZP_05152436.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 6 str. 870]
 gi|256044606|ref|ZP_05447510.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256113486|ref|ZP_05454320.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|256257432|ref|ZP_05462968.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 9 str. C68]
 gi|256264057|ref|ZP_05466589.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563958|ref|ZP_05834444.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260754681|ref|ZP_05867029.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260883707|ref|ZP_05895321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|265991030|ref|ZP_06103587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265994867|ref|ZP_06107424.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|297248281|ref|ZP_06931999.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
 gi|17982999|gb|AAL52216.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str.
           16M]
 gi|225640814|gb|ACO00728.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis ATCC 23457]
 gi|260153974|gb|EEW89066.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260674789|gb|EEX61610.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260873235|gb|EEX80304.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|262765980|gb|EEZ11769.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|263001814|gb|EEZ14389.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094252|gb|EEZ18122.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|297175450|gb|EFH34797.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
 gi|326408963|gb|ADZ66028.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
 gi|326538677|gb|ADZ86892.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
          Length = 482

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 138/365 (37%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE------RKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTL 435
             D  +  KL+L  V     DE  R      +   ++           L  +AT  P   
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEIT 193

Query: 436 VLTSLGDIDISKI-------TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            LT        +I       T K   ++ +K+     ++   + + ++      K A   
Sbjct: 194 KLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEGDSLKNAIIF 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         + V E F SL  H       +HG M    + +++ SFK+G  +LL+A+
Sbjct: 254 CNR--------KKDVSELFRSLTRH-EFDAGALHGDMDQRARMAMLSSFKDGKLRLLVAS 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S +   +        +H++ GR GR         +     +K      
Sbjct: 305 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 609 SVLKN 613
           S++  
Sbjct: 364 SMIGE 368


>gi|114046344|ref|YP_736894.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113887786|gb|ABI41837.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 549

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/373 (16%), Positives = 139/373 (37%), Gaps = 41/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQAQAIPAVLTGKDV------MAAAQTGTGKTAGFTLPLLELLSKGNKAKAGQIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +   +   ++ G +P   + + L         +++ T  
Sbjct: 77  LVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLRH----GVDVLVATPG 132

Query: 385 LFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D +Q     + +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 133 RLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKK-------ILALLPAKRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K    +P++  + P N     +++    + + +K+  +   I+++    
Sbjct: 186 ATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQEDWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R          S A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL-- 611
           G+D+     ++  +  +     +H++ GR GR       + L      K       ++  
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGASGQAVSLVSSEEFKLLRDIERLINR 364

Query: 612 ---KNTEDGFLIA 621
              +   +GF  A
Sbjct: 365 VLERQEIEGFGPA 377


>gi|227487924|ref|ZP_03918240.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227092130|gb|EEI27442.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 718

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 133/369 (36%), Gaps = 35/369 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q   I  +L           +     G+GKT    + + A ++      QA+++A
Sbjct: 132 TPSPIQARTIPALLDGRDV------VGLAQTGTGKTAAFALPIIARIDKSNRSPQALVLA 185

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  +++  +   I V  I G      +   L R     AHII+GT     
Sbjct: 186 PTRELALQVADAFQEFADHVGGINVLPIYGGQAYGIQLSGLRR----GAHIIVGTPGRVI 241

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRTL 435
           D ++   L        +L   DE    G Q+ +   L        V L +AT     R L
Sbjct: 242 DHLKKGSLDISHLDYLVLDEADEMLNMGFQEDVERILEDTPDKKQVALFSATMPNAIRRL 301

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D     +  +      I    + +   +++    +++     +A  I  +    
Sbjct: 302 SQQYLDDPYEVTVKAETRTNTNISQRYLNVAHRNKLDALTRILEVTEFEAMIIFVRT--- 358

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E           S   I+G ++   +E  +D  ++G   +L+AT V   G+
Sbjct: 359 -----KYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVATDVAARGL 413

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  H   + +H++ GR GR       IL   P   +   +   V   T 
Sbjct: 414 DVDRISHVLNYDIPHDTESYIHRI-GRTGRAGRTGEAILFVTPRERRMLRSIERVTNATL 472

Query: 616 DGFLIAEED 624
           +   +   D
Sbjct: 473 EEMQLPTVD 481


>gi|13514809|ref|NP_004651.2| ATP-dependent RNA helicase DDX3Y [Homo sapiens]
 gi|169881239|ref|NP_001116137.1| ATP-dependent RNA helicase DDX3Y [Homo sapiens]
 gi|73620957|sp|O15523|DDX3Y_HUMAN RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|23273291|gb|AAH34942.1| DDX3Y protein [Homo sapiens]
 gi|119612016|gb|EAW91610.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Homo sapiens]
 gi|119612017|gb|EAW91611.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Homo sapiens]
          Length = 660

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 146/379 (38%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I      K +   +     GSGKT   L+ + + +   G          
Sbjct: 201 PTPVQKHAIPII------KGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKE 254

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 255 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 313

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 314 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 370

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  +D+    
Sbjct: 371 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFL 429

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L ++ + G  +  +   +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 430 LDILGATGSDSLTLV-FVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 482

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 483 HQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 541

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 542 FFNEKNMNITKDLLDLLVE 560


>gi|13470499|ref|NP_102068.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
 gi|14021241|dbj|BAB47854.1| probable ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
          Length = 527

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/366 (20%), Positives = 139/366 (37%), Gaps = 47/366 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI   L           +     G+GKT   ++ M   +E G       + +I
Sbjct: 35  PTPIQAGAIPHALLGKD------ILGIAQTGTGKTASFVLPMLTRLEKGRARARMPRTLI 88

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   KY +N ++ + ++ G +    + K LER     A ++I T    
Sbjct: 89  LEPTRELAAQVEENFVKYGKNHKLNIALLIGGVSFDEQDKKLER----GADVLIATPGRL 144

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            D  +  KL+L  V+        + L +        +  M      +TL  ++    +I+
Sbjct: 145 LDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMI-PFTRQTLFFSATMPPEIT 203

Query: 447 KITEKPAGRKPIKTVII-------------------PINRIDEVIERLKVVLSEGKKAYW 487
           K+TEK     P++  +                    P ++ + +   +K   +E K A  
Sbjct: 204 KLTEKFL-HAPVRVEVSKAASAATNITQRLVKSGSKPWDKRETLRNLIKAEDAELKNAII 262

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C +  E        V E F SL ++       +HG M    +  ++ +F++G  + L+A
Sbjct: 263 FCNRKVE--------VSELFRSLLKY-DFDAGALHGDMDQRARMQMLANFRDGKLRYLVA 313

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           + V   G+D+ D S +   +        +H++ GR GR         +     +K     
Sbjct: 314 SDVAARGLDIPDVSHVFNYDVPIHAEDYVHRI-GRTGRAGRSGKSFTIATKSDTKYIDAI 372

Query: 608 LSVLKN 613
             ++ N
Sbjct: 373 ERLIGN 378


>gi|34581357|ref|ZP_00142837.1| ATP-dependent RNA helicase RhlE [Rickettsia sibirica 246]
 gi|28262742|gb|EAA26246.1| ATP-dependent RNA helicase RhlE [Rickettsia sibirica 246]
          Length = 410

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 137/342 (40%), Gaps = 35/342 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQAVIMAPI 330
            PT+ Q+ +I   +           +     GSGKTL  L+ +  + ++    A+I+ P 
Sbjct: 21  EPTEIQKQSIPVAMAG------SDILASSQTGSGKTLAYLLPLIDSFIKNKTTALILVPT 74

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q +  + K T + +I   ++ G  P   +   L++       +IIGT     D +
Sbjct: 75  RELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQLKK----NPKVIIGTPGRIIDHL 130

Query: 391 QYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               L        +L  +D     G++++L+   K               + L+ ++   
Sbjct: 131 NRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEK---------RQVLMFSATMP 181

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----E 497
             I  +++K     P++  +   N+    I++  + +S+ +K   +  Q+  ++      
Sbjct: 182 KHIIAVSQKYLN-NPVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLGNREGSVIIF 240

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++   + ++   +   IHG +S   +E V+ SF+    ++++AT V   G+D+
Sbjct: 241 VKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDI 300

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
                +I  +        LH++ GR GR       +    P 
Sbjct: 301 PHTQHVINYDLPMCPEDYLHRI-GRTGRAGATGHALSFISPD 341


>gi|325970751|ref|YP_004246942.1| DEAD/DEAH box helicase [Spirochaeta sp. Buddy]
 gi|324025989|gb|ADY12748.1| DEAD/DEAH box helicase domain protein [Spirochaeta sp. Buddy]
          Length = 622

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 69/342 (20%), Positives = 134/342 (39%), Gaps = 33/342 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            PTK Q + I  +L+D     ++  I Q   G+GKT    + +   V+      QA+I+A
Sbjct: 27  EPTKIQSACIPLLLKD-----QVDVIGQAQTGTGKTAAFGLPILEIVDPSLYQVQALILA 81

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q+ E I     + ++ +  + G      + + L R      H+++GT     D
Sbjct: 82  PTRELAVQNAEEINSLKGDRRLEIAAVYGGASMELQLRKLRR----GVHVVVGTPGRILD 137

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLV 436
            ++   L L  +        DE    G        L Q      +L  +AT     + L 
Sbjct: 138 HLRRGSLHLEHLKFVVLDEADEMLDMGFIEDIEEVLKQTPAEKRMLCFSATMPQPIQRLA 197

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              + +  + KI +          + + +   D++    +++  E      I  + + + 
Sbjct: 198 ERFMHNAQVVKIQQDTMTSNLTDQIYVEVKESDKLEALTRIIDMEENFYGIIFCRTKVQC 257

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           +   R +++R              +HG +S   +E ++   +  +  +++AT V   GID
Sbjct: 258 DEVGRKLMDR--------GYDAEPLHGDLSQKQRELILHKMRERSISIIVATDVAARGID 309

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + D + +I  +      A +H++ GR GR  +    I    P
Sbjct: 310 ISDLTHVINFSLPEDPDAYIHRV-GRTGRAGKTGIAITFVAP 350


>gi|293376735|ref|ZP_06622957.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909]
 gi|325845681|ref|ZP_08168964.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1]
 gi|292644601|gb|EFF62689.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909]
 gi|325488282|gb|EGC90708.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1]
          Length = 479

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 140/336 (41%), Gaps = 32/336 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           T+ Q S I  +L      N+   I+Q   GSGKT    I +   +   E   QA+I+ P 
Sbjct: 26  TEVQASVIPTVL------NKQDLIVQSKTGSGKTAAFGIPICEMLDWDENKPQALILTPT 79

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E I    +  +I V  + G  P   + + L++    + HI++GT    QD +
Sbjct: 80  RELALQIKEEISNIGRFKRIKVTAVYGKSPFKEQARELKQ----KTHIVVGTPGRVQDHL 135

Query: 391 QYY-----KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +       KL L ++DE         +++ +       ++  A    +T++ ++     I
Sbjct: 136 ERGTLSLDKLSLFVLDEADEMLKMGFIEVVEN------IMNEAPRKRQTMLFSATMPDRI 189

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI---EEKKESNFRS 502
            K+++      P +  I       +++E     + E +K   +   +     ++   F S
Sbjct: 190 KKLSQHYLTH-PQEIKIESPTLTTDLVEHALYEVREQEKVKLLQDLLMVENPERCMIFCS 248

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  ++L+ + +     I  +HG +   ++   M +FK G    L++T V   GIDV  
Sbjct: 249 TKEAVDALYRNLSQKGYPIERLHGGLDQKERFETMKNFKIGRFAYLVSTDVAARGIDVSG 308

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            S +I  +      + +H++ GR GR  +    I  
Sbjct: 309 VSHVINYDLPPEKDSFVHRI-GRAGRAGQKGKAITF 343


>gi|260770312|ref|ZP_05879245.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
 gi|260615650|gb|EEX40836.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
          Length = 632

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/365 (21%), Positives = 143/365 (39%), Gaps = 27/365 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   ++      QA++MA
Sbjct: 28  SPTPIQAAAIPLLLEGRD------ALGKAQTGTGKTAAFSLPLLNKLDLNQYKPQAIVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   QN   + V  I G      + +AL+      AHI++GT    +
Sbjct: 82  PTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQMRALKS----GAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M   P   + ++ ++     +
Sbjct: 138 DLISRERL---HLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLFSATMPPMV 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
             I ++   R P +  +   N+    +E+   V+   +K   +   +E ++         
Sbjct: 195 KDIVDRFL-RDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V +++ +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQ 372

Query: 620 IAEED 624
           +   D
Sbjct: 373 LPHRD 377


>gi|195171504|ref|XP_002026545.1| GL21821 [Drosophila persimilis]
 gi|194111461|gb|EDW33504.1| GL21821 [Drosophila persimilis]
          Length = 812

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/379 (17%), Positives = 136/379 (35%), Gaps = 39/379 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              + ++ + + +     PT  Q  A+   L           I     GSGKT   +  +
Sbjct: 280 FGFDEQLIKAVRKAEYTQPTPIQAQAVPTALAGRD------IIGIAKTGSGKTAAFIWPL 333

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   +I+AP   L+ Q Y   KK+ +   I V    G   +  + K
Sbjct: 334 LMHLMDQRELKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSK 393

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAP 421
           ALE+     A I++ T     D ++       ++  +++DE  R          +     
Sbjct: 394 ALEQ----GAEIVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNH 449

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                   P  +TL+ ++     I ++  +     P++ V   +N  ++ I +   V   
Sbjct: 450 VR------PDRQTLLFSATFKKRIERLA-RDVLSDPVRIVQGDLNEANQDITQSVYVFPN 502

Query: 482 GKKAY--WICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
             + +   +C  ++   E         ++  E   +       +  ++HG M   D+  V
Sbjct: 503 PLQKWNWLLCHLVKFLSEGSVLIFVTKKADAETVANNLLVKEHNCLLLHGDMDQADRNKV 562

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  FK   C +L+AT V   G+D+     ++  +         H++ GR GR  E  +  
Sbjct: 563 ITQFKRKECDILVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRI-GRTGRAGEKGNAF 621

Query: 594 LLYHPPLSKNSYTRLSVLK 612
            L      + +   +  L+
Sbjct: 622 TLVTDKDKEFAGHLVRNLE 640


>gi|315181381|gb|ADT88294.1| ATP-dependent RNA helicase DeaD [Vibrio furnissii NCTC 11218]
          Length = 632

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/365 (21%), Positives = 143/365 (39%), Gaps = 27/365 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SPT  Q +AI  +L+          + +   G+GKT    + +   ++      QA++MA
Sbjct: 28  SPTPIQAAAIPLLLEGRD------ALGKAQTGTGKTAAFSLPLLNKLDLNQYKPQAIVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   QN   + V  I G      + +AL+      AHI++GT    +
Sbjct: 82  PTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQMRALKS----GAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M   P   + ++ ++     +
Sbjct: 138 DLISRERL---HLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLFSATMPPMV 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
             I ++   R P +  +   N+    +E+   V+   +K   +   +E ++         
Sbjct: 195 KDIVDRFL-RDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V +++ +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQ 372

Query: 620 IAEED 624
           +   D
Sbjct: 373 LPHRD 377


>gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47FAA]
          Length = 518

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 132/341 (38%), Gaps = 28/341 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            P+  QE AI  +L           +     G+GKT    + +   +             
Sbjct: 23  KPSPIQEQAIPYVLNGQD------LLGCAQTGTGKTAAFALPIIQNLMERPKNRQKKKPV 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q +E I++Y   T I   +I G +    + ++L R       I++ T
Sbjct: 77  RALILTPTRELALQIHENIEEYGAGTPINSAVIFGGVSAKPQIQSLRR----GIDILVAT 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D I  +++ L  V E        R+           ++       +TL+ ++   
Sbjct: 133 PGRLLDLIGQHEIDLSFV-EIFVLDEADRMLDMGFIHDVKRVITLLPKKRQTLLFSATMP 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----- 497
            +I  +  K     P+K  + P++   ++IE     + +  K   +   +E +       
Sbjct: 192 DEIQALAAK-LLHNPVKVEVTPVSSTVDLIETSLYYVDKANKWPLLVHLLEHEDVSSTLV 250

Query: 498 -SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +  +   +R          + A IHG  S   +++ + +FK+G  ++L+AT +   GID
Sbjct: 251 FTRTKHGADRGAKYLNKSGITAAAIHGDKSQGARQTALSNFKSGRLRVLVATDIAARGID 310

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + + S +I  +  +     +H++ GR GR       I    
Sbjct: 311 IEELSCVINFDLPNVPETYVHRI-GRTGRAGLGGRAISFSD 350


>gi|124022674|ref|YP_001016981.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9303]
 gi|123962960|gb|ABM77716.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9303]
          Length = 636

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 129/345 (37%), Gaps = 39/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q++AI +++           + Q   G+GKT    + +   ++  G   Q +++A
Sbjct: 105 QPSPIQKAAIPELMLGRD------LVGQAQTGTGKTAAFALPLIERLQDHGSRPQVLVLA 158

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  + Y   +  + V  + G      +   L+R       +++GT     
Sbjct: 159 PTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQINTLKR----GVDVVVGTPGRLM 214

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++           L+L   DE  R G    ++            +   P  R +VL S
Sbjct: 215 DHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWI----------LEQLPKERQMVLFS 264

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                  +   K    +P +  I   ++   +I +  + L    K   +   +E      
Sbjct: 265 ATMPSEIRRLSKRYLHEPAEITIKSRDQEARLIRQRCITLQNSHKLEALRRVLEAFTGEG 324

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + +        E     +A+++G +    +E  ++  + G+  +L+AT V   
Sbjct: 325 VIIFARTKVITLTVAEALESAGHDVAVLNGDVPQNQRERTVERLRKGSVNILVATDVAAR 384

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+DV   S++I  +      A +H++ GR GR       IL  +P
Sbjct: 385 GLDVDRISLVINYDIPFDSEAYVHRI-GRTGRAGRSGEAILFVNP 428


>gi|324506599|gb|ADY42814.1| Eukaryotic initiation factor 4A [Ascaris suum]
 gi|324507947|gb|ADY43360.1| Eukaryotic initiation factor 4A [Ascaris suum]
          Length = 415

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 135/359 (37%), Gaps = 38/359 (10%)

Query: 269 IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQA 324
             F  P+  Q+ AI  +   M +      I Q   G+GKT    +++   ++      QA
Sbjct: 60  FGFEKPSAIQQRAI--VPCCMKR----DVIAQAQSGTGKTATFSVSVLQNIDESIPEVQA 113

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++MAP   LAQQ  + +    +   +      G       ++ LE       HI++GT  
Sbjct: 114 LVMAPTRELAQQIQKVMVSLGEYMGVKCHACIGGTNVRDDQRKLES----GVHIVVGTPG 169

Query: 385 LFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRT 434
              D IQ   L        +L   DE    G + ++            V+L++AT     
Sbjct: 170 RVNDMIQRQSLQTSAIKMFVLDEADEMLSRGFKDQIYEVFKCMPNDVQVVLLSATMPAEV 229

Query: 435 LVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIE--RLKVVLSEGKKAYWICP 490
           L +T+    D  +I  K      + I+   I + + +   E            +A   C 
Sbjct: 230 LEVTNRFMNDPVRILVKKEELTLEGIRQFYIDVEKEEWKFETLCDLYQTVNVTQAVIFCN 289

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
              +      +   E++          ++ +HG M   +++ +M  F++G+ ++LI T +
Sbjct: 290 TRRKVDYLANQMTKEKYT---------VSCMHGDMEQSERDLIMREFRSGSSRVLITTDL 340

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +  GIDV   S++I  +        +H++ GR GR       I       ++      S
Sbjct: 341 LARGIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTEQDTRQLKDIES 398


>gi|56965701|ref|YP_177435.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
 gi|56911947|dbj|BAD66474.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
          Length = 493

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 80/417 (19%), Positives = 164/417 (39%), Gaps = 41/417 (9%)

Query: 268 NIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQ 323
           NI F+  T  Q+  I+ +L           I Q   G+GKT    I +   +++     Q
Sbjct: 19  NIGFTEATPIQQETIELVLAGKDV------IGQAQTGTGKTGAFGIPLVNRIDSSNPLVQ 72

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  + ++++ +   +   ++ G      + ++L++    + HII+ T 
Sbjct: 73  GLVLAPTRELANQVEQALRQFGRVKGVRTTVVYGGEDFGKQIRSLKQ----RPHIIVATP 128

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D ++   + L  ++        + L +        +L  T     +TL+ ++    
Sbjct: 129 GRLLDHMRRKTIRLESIETVVLDEADEMLNMGFIEDIETILAETPQETRQTLLFSATMPK 188

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---NF 500
            +  +  K   + P +  +       E I +  + + E +K   +C  I+ +       F
Sbjct: 189 RMESLASKFM-KNPTRIAVKAKEVTMENIAQQFIEVHEREKFDVLCRLIDLETPDLSIVF 247

Query: 501 RSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                R + L E           +HG ++   + SV+  FK G   +L+AT V   G+D+
Sbjct: 248 GRTKRRVDELAEALIKRGYRAEGLHGDLNQAKRNSVLRKFKEGLIDVLVATDVAARGLDI 307

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              + +   +      + +H++ GR GR       I L   P        + ++++    
Sbjct: 308 SGVTHVFNFDLPQDPESYVHRI-GRTGRAGRSGIAITLATKPE----REHVKLIES---- 358

Query: 618 FLIAEEDLKQRK----EGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHILTQ 669
             +++  + QR     E  + G KQS + +   +A     DS     R  AK +L +
Sbjct: 359 --VSKRRMTQRPKPTYEEALEGQKQSTLNELRELAAKGEQDSY----RVAAKELLQE 409


>gi|308454438|ref|XP_003089847.1| hypothetical protein CRE_06212 [Caenorhabditis remanei]
 gi|308268147|gb|EFP12100.1| hypothetical protein CRE_06212 [Caenorhabditis remanei]
          Length = 820

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 140/372 (37%), Gaps = 42/372 (11%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                V  K+   + +     PT  Q  AI  I+           I     GSGKTL  L
Sbjct: 148 WAQCGVNLKMMNVLKKYEYTKPTSIQAQAIPSIMSGRDV------IGIAKTGSGKTLAFL 201

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVI+AP   LA Q Y+   K+ +   + V    G +  + 
Sbjct: 202 LPMFRHILDQPELEEGDGPIAVILAPTRELAMQTYKEANKFAKVLGLRVACTYGGVGISE 261

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A I++ T     D +           ++  +++DE  R   +      
Sbjct: 262 QIADLKR----GAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQI 317

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            K            P  +T++ ++     +  +  K    KP++ ++   + +   + + 
Sbjct: 318 MKVVNNIR------PDKQTVLFSATFPRHMEALARK-VLEKPVEILVGGKSVVCSDVTQN 370

Query: 476 KVVLSEGKKAYWICPQIEEKKES--------NFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
            V+  E +K   +   +    E               +  + L +   +S+A +HG +  
Sbjct: 371 AVICEEHQKLLKLLELLGMYYEQGSSIVFVDKQEKADDIVDQLMKTGYNSVAPLHGGIDQ 430

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            D++S +  FK G  K+L+AT+V   G+DV +  +++  +  +     +H++ GR GR  
Sbjct: 431 HDRDSSIADFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRV-GRTGRAG 489

Query: 588 EISSCILLYHPP 599
           +         P 
Sbjct: 490 KKGYAYTFVLPE 501


>gi|167825727|ref|ZP_02457198.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei 9]
          Length = 240

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 18/244 (7%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 2   KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 54

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 55  IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 113

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 114 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 172

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 173 LDVPPLADAVRMLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 232

Query: 253 IPIN 256
             + 
Sbjct: 233 PAMP 236


>gi|121715182|ref|XP_001275200.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|134034067|sp|A1C5V3|DBP3_ASPCL RecName: Full=ATP-dependent RNA helicase dbp3
 gi|119403357|gb|EAW13774.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 503

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 82/399 (20%), Positives = 153/399 (38%), Gaps = 54/399 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           SPT  Q +    +            I   + GSGKTL   +     +   G+        
Sbjct: 107 SPTPIQSATWPLLFAGRDV------IGIAETGSGKTLAFGLPCLKKILDSGKIKFKNARP 160

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            AVI++P   LA Q Y+ I KY  +  I    I G + +  +R+AL+      A I++ T
Sbjct: 161 AAVIISPTRELAMQIYDQISKYAGSIGIKATCIFGGVKKDEQREALK-----SAAIVVAT 215

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI--PRTL 435
               +D     S+   K+  +++DE  R   +   +  +        ++++TP    +T+
Sbjct: 216 PGRLKDLQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKD-------IISSTPDSKRQTV 268

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEGKKAYWICPQI 492
           + T+     +  +           T+    +   R +  I++   V+    K Y +   +
Sbjct: 269 MFTATWPPSVRDLAATFMTSAVTVTIGGDPSADPRANTRIKQTVEVVQSHDKEYRLVQLL 328

Query: 493 EEKKE-----------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            E +              ++    R   L  +    +A IHG ++  ++   +D+FK+G 
Sbjct: 329 SENQRGAAALDKVLVFCLYKKEAMRVERLLRNKNFKVAGIHGDLNQHERFKSLDAFKSGA 388

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   G+D+    ++I           +H++ GR GR       I L+     
Sbjct: 389 ATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRI-GRTGRAGAEGRAITLFTETDK 447

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
             S   ++VLK  +          +  K G  +  KQ G
Sbjct: 448 AQSGALINVLKAAKQEVPQ-----ELLKFGTTVKKKQHG 481


>gi|23501822|ref|NP_697949.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|161618894|ref|YP_001592781.1| ATP-dependent RNA helicase DDX17 [Brucella canis ATCC 23365]
 gi|254701699|ref|ZP_05163527.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           suis bv. 5 str. 513]
 gi|254704242|ref|ZP_05166070.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           suis bv. 3 str. 686]
 gi|256061039|ref|ZP_05451195.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           neotomae 5K33]
 gi|256369364|ref|YP_003106872.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|260566511|ref|ZP_05836981.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|261325038|ref|ZP_05964235.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261752249|ref|ZP_05995958.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261754908|ref|ZP_05998617.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|294852292|ref|ZP_06792965.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
 gi|23347756|gb|AAN29864.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
 gi|161335705|gb|ABX62010.1| Probable ATP-dependent RNA helicase DDX17 [Brucella canis ATCC
           23365]
 gi|255999524|gb|ACU47923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|260156029|gb|EEW91109.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|261301018|gb|EEY04515.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261742002|gb|EEY29928.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261744661|gb|EEY32587.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|294820881|gb|EFG37880.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
          Length = 482

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 138/365 (37%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE------RKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTL 435
             D  +  KL+L  V     DE  R      +   ++           L  +AT  P   
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEIT 193

Query: 436 VLTSLGDIDISKI-------TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            LT        +I       T K   ++ +K+     ++   + + ++      K A   
Sbjct: 194 KLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEGDSLKNAIIF 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         + V E F SL  H       +HG M    + +++ SFK+G  +LL+A+
Sbjct: 254 CNR--------KKDVSELFRSLTRH-EFDAGALHGDMDQRARMAMLSSFKDGKLRLLVAS 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S +   +        +H++ GR GR         +     +K      
Sbjct: 305 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 609 SVLKN 613
           S++  
Sbjct: 364 SMIGE 368


>gi|225627424|ref|ZP_03785461.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
 gi|256159665|ref|ZP_05457418.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           ceti M490/95/1]
 gi|256254934|ref|ZP_05460470.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           ceti B1/94]
 gi|260168662|ref|ZP_05755473.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           sp. F5/99]
 gi|261222116|ref|ZP_05936397.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261758136|ref|ZP_06001845.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|265998081|ref|ZP_06110638.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
 gi|225617429|gb|EEH14474.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
 gi|260920700|gb|EEX87353.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261738120|gb|EEY26116.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|262552549|gb|EEZ08539.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
          Length = 435

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 91/414 (21%), Positives = 154/414 (37%), Gaps = 54/414 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE------RKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTL 435
             D  +  KL+L  V     DE  R      +   ++           L  +AT  P   
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEIT 193

Query: 436 VLTSLGDIDISKI-------TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            LT        +I       T K   ++ +K+     ++   + + ++      K A   
Sbjct: 194 KLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEGDSLKNAIIF 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         + V E F SL  H       +HG M    + +++ SFK+G  +LL+A+
Sbjct: 254 CNR--------KKDVSELFRSLTRH-EFDAGALHGDMDQRARMAMLSSFKDGKLRLLVAS 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S +   +        +H++ GR GR         +     +K      
Sbjct: 305 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 609 SVLKNT---EDG----FLIAEE-DLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
           S++       DG      ++EE D + RK     G  Q+   K      +  D 
Sbjct: 364 SMIGEKIEWHDGDLSTLAVSEEADEQPRKGRNARGKPQTEQHKHRR---DRDDD 414


>gi|212007716|gb|ACJ22452.1| putative eukaryotic translation initiation factor 4A [Porphyra
           yezoensis]
          Length = 408

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/353 (21%), Positives = 131/353 (37%), Gaps = 32/353 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ AI  ++Q+         I Q   G GKT    I +   ++      QA+I+A
Sbjct: 73  KPSAIQQRAIMPLIQNRDT------IAQAQSGMGKTATFSIGVLQNIDTSVRKVQALILA 126

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ ++ ++  +    I      G        +  +       H+++GT     D
Sbjct: 127 PTRELAQQIHKVVQTLSDFMSISCHACIGGTRVMEDVRVFQSE---TPHVVVGTPGRVFD 183

Query: 389 SIQYYKLI--------LVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
            IQ   L         L   DE    G ++++            V L +AT     L +T
Sbjct: 184 MIQRRALDTGSIKAFCLDEADEMLSRGFKEQIYEIFQFMPATCQVGLFSATMPDDVLEMT 243

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                D  +I  K      + IK   + + R D  +E L          Y      +   
Sbjct: 244 QKFMRDPIRILVKKDELTLEGIKQFYVAVEREDWKLETL-------CDLYETLNITQSII 296

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +N R  VE   +       +++ +HG M   D++ +M  F+ G+ ++LI T ++  GID
Sbjct: 297 YTNTRRKVEWLVAKMNERDFTVSSLHGDMDQKDRDIIMREFRTGSTRVLITTDLLARGID 356

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   S+++  +        +H++ GR GR       I       ++       
Sbjct: 357 VQQVSLVVNYDLPTNKENYIHRI-GRSGRFGRKGVAINFITSEDARAMREIEE 408


>gi|167847213|ref|ZP_02472721.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei B7210]
          Length = 244

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 18/244 (7%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 2   KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 54

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 55  IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 113

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 114 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 172

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 173 LDVPPLADAVRMLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 232

Query: 253 IPIN 256
             + 
Sbjct: 233 PAMP 236


>gi|152996400|ref|YP_001341235.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150837324|gb|ABR71300.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 632

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 138/371 (37%), Gaps = 36/371 (9%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
            ++ +  P+  Q  +I  +L+          + Q   G+GKT    + + + ++      
Sbjct: 24  ADLGYEQPSAIQAQSIPYLLEGRD------LLGQAQTGTGKTAAFALPLLSRIDVTDKTT 77

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E  + Y +N      + I G M    + + L+R       +++G
Sbjct: 78  QLLVLAPTRELAIQVSEAFQSYARNLPDFHVLPIYGGMSYDTQLRQLKR----GVQVVVG 133

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPI 431
           T     D I+   L L  +        DE  R G    ++    Q      + L +AT  
Sbjct: 134 TPGRVMDHIRRKTLKLDGIKALVLDEADEMLRMGFIDDVEWILEQTPPTRQIALFSATMP 193

Query: 432 --PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              R +    L +    KI  K +    I     P++ + ++    +++         I 
Sbjct: 194 AVIRQVANRHLNNPKEVKIVTKTSTAMTITQKYWPVSGLHKLDALTRILEMNEHDGMIIF 253

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +        + VE    L     +    ++G +S   +E  +D  K G   +L+AT 
Sbjct: 254 VRTK-------AATVELAEKLTARGHA-CEALNGDISQNLRERTVDRIKKGQIDILVATD 305

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V+  G+DV   S ++  +  +   + +H++ GR GR     + IL       +       
Sbjct: 306 VVARGLDVERVSHVVNYDIPYDTESYVHRI-GRTGRAGRSGTAILFVAHRERRMLQAIER 364

Query: 610 VLKNTEDGFLI 620
             +   +   +
Sbjct: 365 ATRQPIESMTL 375


>gi|308175626|ref|YP_003922331.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           DSM 7]
 gi|307608490|emb|CBI44861.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           DSM 7]
          Length = 475

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 81/364 (22%), Positives = 136/364 (37%), Gaps = 39/364 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT+ Q   I   LQ      +   +++   GSGKT    I +       E   QA+I+ 
Sbjct: 24  EPTEVQRRVIPAALQ------KKDLVVKSQTGSGKTAAFGIPICELADWEENKPQALILT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I    +  +I    + G      ++  L++    ++H++ GT     D
Sbjct: 78  PTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQ----KSHVVCGTPGRVLD 133

Query: 389 SIQYYKLILV--------IVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP---RTLV 436
            I+   L L           DE    G  +Q   + Q      V ++ +  +P     L 
Sbjct: 134 HIEKGTLPLDRLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTMLFSATLPDDVEKLS 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            T + D ++ ++  +    K I+  +      D+      V+++E   +  I  + +E+ 
Sbjct: 194 RTYMKDPELIEVKAEGLTTKDIEHFVTRAAEEDKSSLLRDVLITENPDSCIIFCRTKERV 253

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                          +        IHG M   D+  VM+ FK G  + LIAT V   GID
Sbjct: 254 IQ--------LTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIATDVAARGID 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           + + S++I  +      + +H+  GR GR       I    P  S+           T  
Sbjct: 306 IENISLVINYDIPLEKESYVHR-TGRTGRAGHRGRAITFVTPSESRFLNDI-----ETYI 359

Query: 617 GFLI 620
           GF I
Sbjct: 360 GFRI 363


>gi|300794325|ref|NP_001179891.1| ATP-dependent RNA helicase DDX3X [Bos taurus]
 gi|297493243|ref|XP_002700250.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Bos
           taurus]
 gi|296470612|gb|DAA12727.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Bos taurus]
          Length = 661

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 202 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 255

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 256 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 314

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 315 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 371

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 372 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 429

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 430 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 483

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 484 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 542

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 543 FFNERNINITKDLLDLLVE 561


>gi|325959925|ref|YP_004291391.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
           sp. AL-21]
 gi|325331357|gb|ADZ10419.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. AL-21]
          Length = 529

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 144/373 (38%), Gaps = 43/373 (11%)

Query: 262 AQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
            Q+ + ++ F   T  Q  AI  +L+            Q   G+GKT    I +   V+ 
Sbjct: 15  IQRAVEDMGFEEATPIQSLAIPHVLEGKDVTG------QAQTGTGKTAAFGIPILETVDP 68

Query: 321 GG---QAVIMAPIGILAQQHYEFIKKYTQNTQII-VEIITGNMPQAHRRKALERIAHGQA 376
                QAVI+ P   LA Q  E +KK ++  + I +  + G  P   + KAL++      
Sbjct: 69  SNRDLQAVILCPTRELAIQVAEEMKKLSKYMRKIGILPVYGGQPIERQIKALKK----GV 124

Query: 377 HIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            IIIGT     D ++           LIL   DE    G ++ ++               
Sbjct: 125 QIIIGTPGRVMDHMRRGTIDMGSVKMLILDEADEMLDMGFREDIEFVLDYIPDE------ 178

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               + L+ ++    DI  IT +         V+     + E I+++   + E  K   +
Sbjct: 179 ---RQILLFSATMSPDILYITRRYQESPEFLKVVPKELTVPE-IKQIYFEVKEKMKLDVL 234

Query: 489 CPQIEEKKES---NFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTC 542
              ++         F +   R + L  H      +   +HG MS   +++VM  F++G  
Sbjct: 235 SRLLDINDFKLSLVFCNTKRRVDKLVNHLQIRGYAADGLHGDMSQRQRDNVMSKFRSGNI 294

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+AT V   GIDV +   +   +  +     +H++ GR GR  +             K
Sbjct: 295 EILVATDVAARGIDVDNVEAVFNFDVPNDDEYYVHRI-GRTGRAGKTGIAYTFVS---GK 350

Query: 603 NSYTRLSVLKNTE 615
             Y    +++ T+
Sbjct: 351 EVYQLRDIMRYTK 363


>gi|302845088|ref|XP_002954083.1| hypothetical protein VOLCADRAFT_82651 [Volvox carteri f.
           nagariensis]
 gi|300260582|gb|EFJ44800.1| hypothetical protein VOLCADRAFT_82651 [Volvox carteri f.
           nagariensis]
          Length = 612

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/368 (19%), Positives = 132/368 (35%), Gaps = 38/368 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQ------- 323
            PT  Q+ +I   L           +     GSGKT      + A+ +  G Q       
Sbjct: 177 KPTPVQKHSITIGLAGRD------LMACAQTGSGKTAAFCFPIIASMLLKGYQPAAGRNS 230

Query: 324 ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                 A+++AP   L  Q Y+  +K+T  T +   +I G  P  ++ + LER       
Sbjct: 231 RKALPGALVLAPTRELTSQIYDEARKFTYMTGLRPVVIYGGAPAPNQLRDLER----GCD 286

Query: 378 IIIGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I++ T     D I+  ++ L       +DE  R          Q         M      
Sbjct: 287 ILVATPGRLSDFIERGRVGLSSILFLCLDEADRMLDMGFEP--QIRRIVEQEDMPPVGQR 344

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++    +I ++           TV    +  D +++ ++  +S  +K   +   I
Sbjct: 345 QTLMFSATFPKEIQRLAADFLSNYVFLTVGRVGSSTDLIVQHIEY-VSSDEKQNTLLDLI 403

Query: 493 EEKK-----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
              +         +   +    +          IHG  S   +E  + SFK+G   +++A
Sbjct: 404 STVEGLTLVFVETKRGADELERILTRNQLPATSIHGDRSQEQREMALRSFKSGKTPVMVA 463

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+   + +I  +        +H++ GR GR          +    +  + + 
Sbjct: 464 TDVAARGLDIPHVTHVINYDLPKDIDDYVHRI-GRTGRAGHKGLATAFFTDADAPLARSL 522

Query: 608 LSVLKNTE 615
           + VL  T 
Sbjct: 523 VEVLTETN 530


>gi|239996759|ref|ZP_04717283.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
          Length = 596

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 81/380 (21%), Positives = 148/380 (38%), Gaps = 45/380 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N+   I Q + +     P+  Q  +I  +L+          + Q   G+GKT    + M
Sbjct: 12  LNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHD------LLGQAQTGTGKTAAFALPM 65

Query: 315 AAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALER 370
            A +   E   Q +++AP   LA Q  E  + Y   +Q I V  + G     ++ + L+R
Sbjct: 66  LANIDPEERKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKR 125

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATA 420
                  +++GT     D I+   L        +L   DE  R G    ++L        
Sbjct: 126 ----GVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEE 181

Query: 421 PHVLLMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKTV---IIPINRIDEVIERL 475
               L +AT P P + +    L D    KI  K +    I+     I P ++++ +   +
Sbjct: 182 RQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRIM 241

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +V + +G   +               + VE  + L       +  ++G +    +E  ++
Sbjct: 242 EVEVFDGMIIFV----------RTKTATVELADKLSARGYD-VEPLNGDIPQAARERTVE 290

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             K G   +L+AT V+  G+DV   S +I  +  +   + +H++ GR GR       IL 
Sbjct: 291 KLKQGKIDILVATDVVARGLDVERVSHVINYDIPYDSESYVHRI-GRTGRAGRQGDAILF 349

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
               +S      L  ++ T 
Sbjct: 350 ----ISHREKRLLFSIEKTT 365


>gi|242012227|ref|XP_002426835.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212511048|gb|EEB14097.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 678

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 81/377 (21%), Positives = 146/377 (38%), Gaps = 40/377 (10%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
                ++R   F+ PT  Q       L           +     GSGKT+  ++     +
Sbjct: 136 DYIMNVIRKQGFTVPTPIQAQGWPIALSGKD------IVGIAKTGSGKTIAYMLPAIVHI 189

Query: 319 --------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                     G  A+I+AP   LAQQ       + + T+I    I G  P+  + + LE 
Sbjct: 190 HNQPPLELNDGPIALILAPTRELAQQIQSVANDFGEATRIRNSCIFGGAPKGPQFRDLES 249

Query: 371 IAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATA 420
                  I+I T     D ++           L+L   D     G + +++    Q    
Sbjct: 250 ----GVEIVIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPD 305

Query: 421 PHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             VL+ +AT     R L    L D     I             I+ + +  E   +L+ +
Sbjct: 306 RQVLMWSATWPKEVRALAEDYLTDYIQLNIGSLQLSANHNILQIVDVCQEHEKENKLRQL 365

Query: 479 LSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           L E   +K       +E K++ +  + +     L +    +++I HG  +  +++ V+  
Sbjct: 366 LHEIGSEKENKTIIFVETKRKVDNITQI-----LRKDGWPALSI-HGDKNQQERDHVLTQ 419

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+NG   +L+AT V   G+DV D   +II +        +H++ GR GR E+  +    +
Sbjct: 420 FRNGRASILVATDVAARGLDVEDVKFVIIFDYPSSLEDYIHRI-GRTGRSEQTGTAYAFF 478

Query: 597 HPPLSKNSYTRLSVLKN 613
            P   K++   ++VL+ 
Sbjct: 479 TPHNVKHANALINVLEE 495


>gi|15221998|ref|NP_175911.1| DEAD box RNA helicase, putative (RH20) [Arabidopsis thaliana]
 gi|75333448|sp|Q9C718|RH20_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 20
 gi|12321578|gb|AAG50841.1|AC073944_8 ethylene-responsive RNA helicase, putative [Arabidopsis thaliana]
 gi|17065338|gb|AAL32823.1| Unknown protein [Arabidopsis thaliana]
 gi|22136216|gb|AAM91186.1| unknown protein [Arabidopsis thaliana]
 gi|332195071|gb|AEE33192.1| DEAD-box ATP-dependent RNA helicase 20 [Arabidopsis thaliana]
          Length = 501

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 145/363 (39%), Gaps = 39/363 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q          M+ K R L I   + GSGKTL  L+     V A        G  
Sbjct: 121 EPTPIQSQGWP-----MAMKGRDL-IGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPI 174

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +   K+  +++I    I G +P+  + + L++       I+I T 
Sbjct: 175 VLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQK----GVEIVIATP 230

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       ++  +++DE  R          +K  +         P  +TL  +
Sbjct: 231 GRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIR------PDRQTLYWS 284

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +    ++ ++++K     P K +I   + + +  I ++  V+SE +K   +   +E+  +
Sbjct: 285 ATWPKEVEQLSKKFL-YNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMD 343

Query: 498 S-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   + +   ++              IHG  S  +++ V+  F++G   ++ AT V
Sbjct: 344 GSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDV 403

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D   +I  +        +H++ GR GR     +    +    ++ +    ++
Sbjct: 404 AARGLDVKDVKYVINYDFPGSLEDYVHRI-GRTGRAGAKGTAYTFFTVANARFAKELTNI 462

Query: 611 LKN 613
           L+ 
Sbjct: 463 LQE 465


>gi|319654684|ref|ZP_08008763.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317393600|gb|EFV74359.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 472

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 91/428 (21%), Positives = 160/428 (37%), Gaps = 34/428 (7%)

Query: 269 IPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QA 324
           + F   T  Q   I   L++         I Q   G+GKT    I M   ++      Q 
Sbjct: 1   MGFEEATPIQAQTIPLSLENKD------LIGQAQTGTGKTAAFGIPMIDKIDNTKDFIQG 54

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  E + K     +  V  I G      + +AL      + HII+GT  
Sbjct: 55  IVIAPTRELAIQVSEELYKIGYGKRTKVLSIYGGQDINRQIRAL----KNKPHIIVGTPG 110

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D I    + L  V         + L +        +L        +TL+ ++     
Sbjct: 111 RILDHINRKTMRLDHVHTAILDEADEMLNMGFIDDIEAILAQI-PEERQTLLFSATMPAP 169

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFR 501
           I ++ E+   ++P    +         IE+  + + E  K   +   ++ +       F 
Sbjct: 170 IRRMAERFM-KEPQIVRVKAKEMTVSSIEQYYIEVHEKNKFDVLTRLLDIQSPELAIVFG 228

Query: 502 SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               R + L E           IHG +S   + SV+  FK G+  +L+AT V   G+D+ 
Sbjct: 229 RTKRRVDELAEALNLRGYMAEGIHGDLSQAKRISVLRKFKEGSIDVLVATDVAARGLDIS 288

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    +   +P      +      K   +  
Sbjct: 289 GVTHVYNFDIPQDPESYVHRI-GRTGRAGKTGVAMTFINPREKSYLHVVERTTKRKMERM 347

Query: 619 LIAEED--LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA-------KHILTQ 669
                D  L+ +++  +  I Q+     L +  E  D LL  A+KDA         +LT+
Sbjct: 348 DAPTLDEALEGQQKAVMEKIMQTIEENNLESYKEAADELL--AQKDASTVVQAVLKMLTK 405

Query: 670 DPDLTSVR 677
           +PD T V+
Sbjct: 406 EPDTTPVK 413


>gi|117621384|ref|YP_857155.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562791|gb|ABK39739.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 642

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/423 (20%), Positives = 158/423 (37%), Gaps = 47/423 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L+++ +  P+  Q +AI  ++           + Q   G+GKT    + + + +EAG   
Sbjct: 34  LQDVGYERPSPIQAAAIPHLMAGHD------LLGQAQTGTGKTAAFALPLLSRLEAGNRN 87

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E  ++Y  +      + I G      + +AL R     A +++
Sbjct: 88  TQILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGGASYETQTRALRR----GAQVVV 143

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATP 430
           GT     D I+   L        +L   DE  R G    +     Q      V L +AT 
Sbjct: 144 GTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPAGRQVALFSATM 203

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
             +   +    L      KI  K A    I+     +  + ++    +++  E  +A  +
Sbjct: 204 PEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHKLDAMTRLLEVEPYEALLV 263

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +         ++  E           +   +HG +    +E  +D  + G   +LIAT
Sbjct: 264 FVRT--------KNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIAT 315

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V+  G+DV   + ++  +  +   + +H++ GR GR       IL   P          
Sbjct: 316 DVVARGLDVERITHVVNYDIPYDTESYVHRI-GRTGRAGRKGEAILFVAP-------RER 367

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIARKDAKHIL 667
            +L+  E     A E +K     +I    Q  + KF    +  +    LEI       ++
Sbjct: 368 RMLRAIEHATRQAIEPMKMPSTEDI---NQHRLAKFKERIRETMMGEELEIYVNLVNELI 424

Query: 668 TQD 670
            +D
Sbjct: 425 EED 427


>gi|325284979|ref|YP_004260769.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324320433|gb|ADY27898.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 429

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 76/359 (21%), Positives = 139/359 (38%), Gaps = 38/359 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  QE AI  +L+          +     G+GKT    + +   +           +A
Sbjct: 23  TPSPIQEKAIPPVLEGKDV------LASAQTGTGKTAGFTLPLLHLLSEQKALRHRPVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q +  +K+Y++   +   +I G + Q  +   L+R       +++ T  
Sbjct: 77  LILTPTRELAAQIFANVKEYSEFLDLRSAVIFGGVNQKPQIANLKRGM----DVLVATPG 132

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLT 438
              D      L L      ++DE  R      L+  ++       +M   P   + L+ +
Sbjct: 133 RLLDLHNQRFLSLDKVEIFVLDEADRMLDMGFLRDIER-------VMKLIPAKRQNLMFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    DI K+        PI+    P N   EVI++    +++GKK   I   I +    
Sbjct: 186 ATFSKDIKKLAH-GILNNPIQVEATPENTAVEVIKQKVYRVAKGKKTGLIIKLISDGNWQ 244

Query: 499 N---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F       N+L +  +S   S A IHG  S   +   +D FK GT ++L+AT +  
Sbjct: 245 QVLVFTRTKHGANNLCKKMSSKGISAAAIHGNKSQGARTKALDGFKKGTLRVLVATDIAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            G+D+     +I     +     +H++ GR GR       + L     +        ++
Sbjct: 305 RGLDIPLLPHVINYEIPNISEDYVHRI-GRTGRAGASGEAVSLVSADETTYLKDIQKLI 362


>gi|229828479|ref|ZP_04454548.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
           14600]
 gi|229793073|gb|EEP29187.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
           14600]
          Length = 538

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 141/358 (39%), Gaps = 35/358 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIM 327
            PT  QE +I  IL+          I     G+GKT    + +   +        +A+++
Sbjct: 84  EPTPVQEESIPVILEGRD------MIGCAQTGTGKTAAFALPVLHKLTLLKRPRVRALVL 137

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF- 386
            P   LA Q ++  KKY +   +    + G   +  +  AL R     A I++ T     
Sbjct: 138 TPTRELAIQIFDNFKKYGRYLHLRTVCLYGGAKRGPQIGALRR----GADILVATPGRLL 193

Query: 387 ----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               QD +    + ++++DE  R      L           ++ +     +TL+ ++  +
Sbjct: 194 DFMGQDLVDLSSVEILVLDEADRMLDMGFLPDVS------RIVESTPSKRQTLMFSATME 247

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----- 497
            ++ ++ ++   + P++  + P N   + +E+  +  S   K   I   + ++       
Sbjct: 248 KEVRQLADR-MLKDPVQVQVTPENEAADTVEQKLIFSSREDKREIIASLLTDEAVESAIV 306

Query: 498 -SNFRSVVERF-NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            +  +   ++    L      S+AI HG  +   ++  ++ FK+G  ++++AT V   G+
Sbjct: 307 FTRTKHGADKLSRELKRRGIESVAI-HGDKTQGQRQDALNRFKSGKVRVMVATDVAARGL 365

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           D+   S +   +      A +H++ GR GR  E    I L              +L+ 
Sbjct: 366 DIPKLSHVFNYDVPEEAGAYIHRI-GRTGRAGESGIAITLCCEAELDALREVEELLEK 422


>gi|194868558|ref|XP_001972305.1| GG13958 [Drosophila erecta]
 gi|190654088|gb|EDV51331.1| GG13958 [Drosophila erecta]
          Length = 786

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 79/398 (19%), Positives = 146/398 (36%), Gaps = 50/398 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              + ++ + + +     PT  Q  A+   L           I     GSGKT   +  M
Sbjct: 272 FGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRD------IIGIAKTGSGKTAAFIWPM 325

Query: 315 AAAVEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              V    Q         +I+AP   L+ Q Y   KK+ +   + V    G   +  + K
Sbjct: 326 LMHVMDQRQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSK 385

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK- 417
           ALE+     A II+ T     D ++           L+L   D     G + +++     
Sbjct: 386 ALEQ----GAEIIVATPGRMIDMVKMKATNLRRVTYLVLDEADRMFHMGFEPQVRSICNH 441

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKITE---KPAGRKPIKTVII---PINRIDE 470
                  L+ +AT   R   L      D  +I +     A +   ++V +   P+ + + 
Sbjct: 442 VRPDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNW 501

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           ++  L   LSEG    ++  +++ +  SN   + E           +  ++HG M   D+
Sbjct: 502 LLCHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKE----------YNCLLLHGDMDQADR 551

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             V+  FK   C +L+AT V   G+D+     ++  +         H++ GR GR  E  
Sbjct: 552 NKVITQFKRKECDILVATDVAARGLDIPHIKNVVNYDTARDIETHTHRI-GRTGRAGEKG 610

Query: 591 SCILLYHPPLSKNSYTRLSVLKNT-----EDGFLIAEE 623
           +   L      + +   +  L+       +D   +A +
Sbjct: 611 NAFTLVTDKDKEFAGHLVRNLEGADQQVPDDLMELAMK 648


>gi|70663484|emb|CAJ15141.1| PL10b protein [Platynereis dumerilii]
          Length = 816

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 133/372 (35%), Gaps = 43/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ A+  I      K +   +     GSGKT   L+ + + +   GQ        
Sbjct: 356 KPTPVQKHAMPII------KKKRDLMACAQTGSGKTASFLVPVLSQMFLDGQPEFIREQN 409

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                     A+++AP   LA Q YE  +K+   + +   ++ G      + + L     
Sbjct: 410 NRNNRKQYPIALVLAPTRELASQIYEEARKFAYRSHVRPCVVYGGADIGAQMRDLPER-- 467

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+++ T     D ++  K+ L  +     DE  R          ++        M  
Sbjct: 468 -GCHLLVATPGRLVDMLERGKIGLDHIRFVVLDEADRMLDMGFEPQIRRIVEKDT--MPP 524

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   RTL+ ++    +I  +  +      I   +  +    E I +  V + E  K  ++
Sbjct: 525 TGDRRTLMFSATFPKEIQILA-RDFLHNYIFLAVGRVGSTSENITQKVVWVEEPDKRSFL 583

Query: 489 CPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
              +               +   +  ++   +     A IHG  S  ++E  + +F++G 
Sbjct: 584 LDLLNASGPDSLTLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKEREEALRNFRSGK 643

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++    
Sbjct: 644 TPVLVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATSFFNDKNK 702

Query: 602 KNSYTRLSVLKN 613
                 + +L  
Sbjct: 703 NIVRDMVDLLIE 714


>gi|119773652|ref|YP_926392.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
 gi|119766152|gb|ABL98722.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
          Length = 637

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 90/425 (21%), Positives = 153/425 (36%), Gaps = 52/425 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + +  PT  Q ++I+ ++           + Q   G+GKT    + +  +V+A    
Sbjct: 21  LDELGYETPTPIQAASIQPLMSGQD------ILGQAQTGTGKTGAFALPLLCSVDANLNA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    Y ++     V  I G      + +AL R       +++
Sbjct: 75  PQILVLAPTRELAVQVAEAFTSYAKHMKGFHVLPIYGGQSMYQQLQALRR----GPQVVV 130

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++           L+L   DE  + G    ++   +           TP  
Sbjct: 131 GTPGRVMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEWILEH----------TPES 180

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R L L S    +  K       R P+   I   +   E IE+  V +S+  K   +   +
Sbjct: 181 RQLALFSATMPEQIKRVANKHLRNPVNISIAASHTTVESIEQRFVQVSQHNKLEALVRVL 240

Query: 493 EEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E +           R+         E    + + +HG M+   +E  +D  K+G   +LI
Sbjct: 241 EVENTEGIIIFVRTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILI 300

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV     ++  +  +   A +H++ GR GR       IL       +   T
Sbjct: 301 ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRI-GRTGRAGRTGMAILFVTSREMRMLRT 359

Query: 607 RLSVLKNTEDGFLI------AEEDLKQRKE--GEILGIKQSGMPKFLIA----QPELHDS 654
                 +      I      AE  L +  E   +IL  +     K  +A    Q E+   
Sbjct: 360 IERATNSRISPMKIPSPESVAERRLSRLGEQVADILANEHLDFMKGAVAQLCQQLEVDTE 419

Query: 655 LLEIA 659
            L  A
Sbjct: 420 QLAAA 424


>gi|254774280|ref|ZP_05215796.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 542

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/358 (20%), Positives = 134/358 (37%), Gaps = 35/358 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  Q + I  ++           +     G+GKT    I + + ++      QA+++A
Sbjct: 11  TPTGIQAATIPALMAG------SDVVGLAQTGTGKTAAFAIPILSNIDVASTATQALVLA 64

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y  +   I V  I G    A +   L+R     AH+++GT     
Sbjct: 65  PTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLKR----GAHVVVGTPGRVI 120

Query: 388 DSIQYYKLILVIVD--------EQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVL 437
           D ++   L L  VD        E    G  + +   L++      V L +AT  P    L
Sbjct: 121 DHLERGTLNLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFSATMPPAIRKL 180

Query: 438 TSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           T+    D  +++ K        I    I +    ++    +V+  E  +A  +  +    
Sbjct: 181 TAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKMDALTRVLEVEPFEAMIVFVRT--- 237

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E           S A I+G +    +E  + + K+G   +L+AT V   G+
Sbjct: 238 -----KQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAARGL 292

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           DV   S ++  +  H   + +H++ GR GR     + +L   P             + 
Sbjct: 293 DVERISHVLNYDIPHDTESYVHRI-GRTGRAGRSGTALLFVSPRERHLLKAIEKATRQ 349


>gi|255589662|ref|XP_002535040.1| hypothetical protein RCOM_0410940 [Ricinus communis]
 gi|223524144|gb|EEF27343.1| hypothetical protein RCOM_0410940 [Ricinus communis]
          Length = 217

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/162 (46%), Positives = 102/162 (62%), Gaps = 4/162 (2%)

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           + ++H RM   +K++VM+ F  G   +L++TTVIEVG+DV +AS+++IE+AE FGL+QLH
Sbjct: 7   VGLLHSRMPTAEKKAVMELFSAGVMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLH 66

Query: 578 QLRGRVGRGEEISSCILLYH----PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
           QLRGRVGRG   S+C+LLY       L + +  RL  +  T DGF IA  DL+ R  GE 
Sbjct: 67  QLRGRVGRGAAASACVLLYSVGDSGRLGETAKDRLRAMAETNDGFEIARRDLEIRGPGEF 126

Query: 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
           LG +QSG P    A  E    LL+ AR+ A  +L Q P L  
Sbjct: 127 LGARQSGAPMLRFADLEQDLMLLDWARELAPRMLEQHPQLAQ 168


>gi|73667695|ref|YP_303710.1| ATP-dependent RNA helicase [Methanosarcina barkeri str. Fusaro]
 gi|72394857|gb|AAZ69130.1| ATP-dependent RNA helicase [Methanosarcina barkeri str. Fusaro]
          Length = 579

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 90/444 (20%), Positives = 169/444 (38%), Gaps = 58/444 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG-QAVIMA 328
            PT  QE  I   L+          I Q   G+GKT      +   +  ++G  QA+++ 
Sbjct: 27  EPTPIQEKVIPLFLKGEC-----DIIGQAQTGTGKTTAFGAPIIEKIPEKSGKVQAIVLT 81

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E +     + ++ +  I G      + + L+        I++GT     D
Sbjct: 82  PTRELAIQVSEELNSLKGDKKLHIVPIYGGQSMTQQFRMLKS----GVDIVVGTPGRVID 137

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            ++   L L  +        DE    G    +K   KAT          P  R L  ++ 
Sbjct: 138 HLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATG---------PDKRMLFFSAT 188

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               I  I +K    K  + V I    +D  + E++   + E  K   +C  I+ + E  
Sbjct: 189 MPKPILGIIKKH--MKNYEYVAIKKEDLDVNLTEQIYFEVKESDKFEALCRIIDIEDEFY 246

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  ++   +          +   +HG +S  ++E +++ F+     +L+AT V   
Sbjct: 247 GLVFCRTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILVATDVAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID++D + +I  +      + +H++ GR GR  +  + I       +   Y RL+ +K 
Sbjct: 307 GIDIMDLTHVINYSLPQDPESYVHRI-GRTGRAGKQGTAITFV----TSTEYRRLTYIKK 361

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP--ELHDSLLEIARKDAKHILTQDP 671
           T      A +  +  +  +++  K++ +   L      E +   LE++    +  L + P
Sbjct: 362 TS---KSAMKRGRIPEIKDVIKAKRARVKAELEETIKNEEYGDCLEMS----EKFLEEYP 414

Query: 672 DLTSVRGQSIRILLYLYQYNEAFQ 695
                  + I   L  Y + E F 
Sbjct: 415 ------AEKILAALLKYSFKEMFD 432


>gi|259047319|ref|ZP_05737720.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
 gi|259036015|gb|EEW37270.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
          Length = 520

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 127/350 (36%), Gaps = 35/350 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           +  + F   T  Q   I   LQ +        I Q   G+GKT    + M   ++    G
Sbjct: 27  IEKMGFEEATPIQAQTIPKALQGLDV------IGQAQTGTGKTAAFGLPMLQKIDPSKKG 80

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++AP   LA Q  E + +  ++ +I V+ + G      + + L+        I++G
Sbjct: 81  VQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADINRQIRQLKE----NPQIVVG 136

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-- 429
           T     D I    L L  V        DE    G  + +   + Q       LL +AT  
Sbjct: 137 TPGRLLDHISRRTLKLGAVETLVLDEADEMLNMGFLEDIESIIKQVPENRQTLLFSATMP 196

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              + + +  + D +  +I         I    +     ++     +++  +  +   + 
Sbjct: 197 DDIKRIGVQFMKDPEHVRIKSNEMTATLIDQYFVKCKDYEKFDIMTRLLDVQTPELTIVF 256

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +  V+      E        IHG +S   + SV+  FKN    +L+AT 
Sbjct: 257 GRT--------KRRVDELARGLEMRGYRAEGIHGDLSQQKRMSVLRDFKNNHLDILVATD 308

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 309 VAARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGQEGMSVTFVTPN 357


>gi|119475746|ref|ZP_01616099.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium
           HTCC2143]
 gi|119451949|gb|EAW33182.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium
           HTCC2143]
          Length = 451

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 142/365 (38%), Gaps = 35/365 (9%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----- 319
           L  + FS  T+ Q  AI + L+      R   ++    GSGKT   L+ +   +      
Sbjct: 17  LDKLGFSEATEVQAQAIPEALK------RRDLMVSAQTGSGKTAAFLLPILHQILTEEVS 70

Query: 320 -AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            +G + +I+ P   LA Q  +  +     T I   +I G     H+   L +       +
Sbjct: 71  TSGTRVLILLPTRELALQTQKNFEMLAAFTYIKSGLIIGGEAFKHQVATLRK----DPEV 126

Query: 379 IIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           +I T     D I+     + +L ++++DE  R                + +  +  P  +
Sbjct: 127 LIATPGRLVDHIEKGTPDFRQLEVLVLDEADRMLDMGFAIDM------NTIASSCNPERQ 180

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    +      K         V  P ++  ++ ++L +  +   K   +   I+
Sbjct: 181 NLLFSASLKHEGLGKISKSFRDPVAIAVGSPDHQHQDICQQLVLADTIKHKEKLVEALID 240

Query: 494 EKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           E++        N R   ++ + L  +    +  IHG +S  D++ VM+ F+ G   +L+A
Sbjct: 241 EEQAQKTLVFCNTRVQCQQLSHLLRYKKMKVGYIHGDISQNDRKQVMNQFRQGGIAVLVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+    +++  N    G   LH++ GR GR  E    I L          + 
Sbjct: 301 TDVAARGLDIKGVDLVVNFNIAQSGDDHLHRV-GRTGRAGEQGKAITLIDSNEWNQMSSI 359

Query: 608 LSVLK 612
              LK
Sbjct: 360 ERYLK 364


>gi|222148785|ref|YP_002549742.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
 gi|221735771|gb|ACM36734.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
          Length = 516

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 145/390 (37%), Gaps = 54/390 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKTLVALIAMAAAVEAG------GQA 324
           PT  Q  AI   L        M R + G    G+GKT   ++ M   +E G       + 
Sbjct: 17  PTPIQAGAIPPAL--------MRRDICGIAQTGTGKTASFVLPMLTLLEKGRARARMPRT 68

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +IM P   LA Q  E  +KY +N ++ + ++ G +    + + LER     A ++I T  
Sbjct: 69  LIMEPTRELAAQVAENFEKYGKNHKLNIALLIGGVSFDEQDRKLER----GADVLICTPG 124

Query: 385 LFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP-- 432
              D  +  KL++  V     DE  R      +   ++           L  +AT  P  
Sbjct: 125 RLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSATMPPEI 184

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID----EVIERLKVVLSEGKKAYWI 488
           + L    L + +  ++    +  K +   ++     D      +  +     + K A   
Sbjct: 185 QKLADKFLQNPERIEVAPPSSTAKTVTQRLVACQNKDYEKRSTLRDIIRAQDDLKNAIIF 244

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         + V + F SL  H   S+  +HG M    + +++  FK+    LL+A+
Sbjct: 245 CNR--------KKDVADLFRSLERHG-FSVGALHGDMDQRSRTNMLAGFKDNQITLLVAS 295

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S +   +        +H++ GR GR         L     +K      
Sbjct: 296 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGRAFTLVTKSDAKYLDAIE 354

Query: 609 SVLKNTEDGF--------LIAEEDLKQRKE 630
            ++    +           +AE D  +R+ 
Sbjct: 355 KLIGEKPEWLDGDVASLPPMAEGDRDERRG 384


>gi|113969089|ref|YP_732882.1| ATP-dependent RNA helicase DbpA [Shewanella sp. MR-4]
 gi|113883773|gb|ABI37825.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 458

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/449 (15%), Positives = 161/449 (35%), Gaps = 47/449 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + ++ ++ + +     +  T  Q  ++  IL           I QG  GSGKT    + +
Sbjct: 6   LKLKPELLENLTTMGYYEMTPIQAQSLPAILAGEDV------IGQGKTGSGKTAAFGLGL 59

Query: 315 AAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALER 370
              ++      Q +++ P   LA Q  + I+   +    + V  + G +P   +  +LE 
Sbjct: 60  LNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEH 119

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
                AHII+GT     D ++  +L L  +          R+           ++  +  
Sbjct: 120 ----GAHIIVGTPGRIVDHLERNRLDLSNL-NMLVLDEADRMLEMGFQPQLDAIIEQSPR 174

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +TL+ ++     I  I  K     P+   +   +    + +    +  +  +   +  
Sbjct: 175 ERQTLLFSATFPEQIQSIA-KQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQL 233

Query: 491 QIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            + ++K        N +   ++          S+  +HG +   D++  +  F N +  +
Sbjct: 234 LLLDRKPESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACV 293

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT V   G+D+     +   +  +     +H++ GR GR     +    ++       
Sbjct: 294 LVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRI-GRTGRAGSKGAAFTFFNDQDGYKI 352

Query: 605 YTRLSVLKNTEDGFLIAEEDL--------------------KQRKEGEILG--IKQSGMP 642
                 L+       +    L                    ++ + G+ILG    ++G+ 
Sbjct: 353 ALLEEYLERDIQSEALPSLSLLGTAPNAPTMITLQIDGGKKEKLRPGDILGALTGENGIE 412

Query: 643 KFLIAQPEL--HDSLLEIARKDAKHILTQ 669
              + +  +  + + + + RK AK  L++
Sbjct: 413 GSQVGKILVTDYRAYVAVNRKVAKKALSK 441


>gi|325293690|ref|YP_004279554.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
 gi|325061543|gb|ADY65234.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
          Length = 500

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 127/355 (35%), Gaps = 26/355 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L+          I     G+GKT    + +   +            +
Sbjct: 32  TPTPIQAKAIPLLLEGRD------LIGLAQTGTGKTAAFGLPIIEMLMKQADRPANRTTR 85

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   L  Q  E ++ + + T + +  + G      ++  LE+       +++ T 
Sbjct: 86  TLILAPTRELVNQIGENLRSFVKKTPLRINQVVGGASINKQQLQLEK----GTDVLVATP 141

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D I    + L  V         Q L L        +  M      +TL+ ++    
Sbjct: 142 GRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISKMVPA-KRQTLLFSATMPK 200

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---- 499
            IS++            V  P    D+V + +  V  +  K   +   + E  +      
Sbjct: 201 AISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKSLNENPDGRSIVF 260

Query: 500 --FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   E+     EH    +A IHG  S   +E  +  FK+G  K+L+AT V   GID+
Sbjct: 261 LRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLVATDVAARGIDI 320

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              + +   +      A +H++ GR  R       I    P  ++  +    ++K
Sbjct: 321 PAVTHVFNYDLPEVPDAYVHRI-GRTARAGRDGIAIAFCAPDETRLLHDIEKLMK 374


>gi|237510128|ref|ZP_04522843.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|235002333|gb|EEP51757.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Burkholderia pseudomallei
           MSHR346]
          Length = 465

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 170/461 (36%), Gaps = 62/461 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 23  LAQLGYTDMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARRFD 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    + V  + G  P   + ++LE      AHII+
Sbjct: 77  VQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIIV 132

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 133 GTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQ------CPPTRQTL 186

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   +   
Sbjct: 187 LFSATYPDGIAKLSQQFLRHP--KKVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHY 244

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +       +  +HG +   +++ V+  F N +C +L+AT 
Sbjct: 245 RPVSTIAFCNTKQQCRDLLDVLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 305 VAARGLDIAQLEAVINVDVTPDPEVYVHRI-GRTGRADQDGWALSLASMNEMGRVGGIEQ 363

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILGIKQSGMPKFLIAQP 649
            L    +   +A              E L+           G++LG   +G   F  AQ 
Sbjct: 364 ALAREVEWHPLAELKAGGDAPLLPPMETLQILGGRKDKIRPGDVLGAL-TGDAGFSGAQI 422

Query: 650 -----ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                    + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 423 GKINVTEFSTYVAVERGIARDALRKL-NAGKIKGKRVKVRL 462


>gi|328675823|gb|AEB28498.1| Cold-shock DEAD-box protein A [Francisella cf. novicida 3523]
          Length = 570

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 81/401 (20%), Positives = 154/401 (38%), Gaps = 46/401 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----AGGQAVI 326
           +PT  Q+ AI  IL           + Q   G+GKT    + +   ++        Q ++
Sbjct: 29  TPTPIQQYAIPYILSGRDV------LGQAQTGTGKTAAFALPLINNIDLRSRDKSPQVLV 82

Query: 327 MAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +AP   LA Q  E  + + +N   + V  I G      + +AL++       +++GT   
Sbjct: 83  LAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALKQ----GVKVVVGTTGR 138

Query: 386 FQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D I+           L+L   DE  R G    ++      +            + L+ 
Sbjct: 139 VMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRFVLSHISEQC---------QRLLF 189

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    DI+ I E+         V       + V +  K ++ +G +      ++ E +E
Sbjct: 190 SATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQ--KFIVIKGFRKIDALDRLLEIEE 247

Query: 498 SN--------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           ++          S +E  ++L       +A I+G M    +E ++D F+N    +L+AT 
Sbjct: 248 TDGVIIFVKTKTSTIEVADNLK-ALGYKVAAINGDMQQSQREYIVDQFRNAKSDILVATD 306

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V+  GID+   S +I  +  +     +H++ GR GR     + I L      +   T   
Sbjct: 307 VVARGIDLERISHVINYDMPNDTDTYVHRI-GRTGRAGREGTSISLVPLKEMRFLRTLER 365

Query: 610 VLKN-TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP 649
              +  ++ F+ + +DL Q +         SG+ K      
Sbjct: 366 FTGSPMQEVFMPSAKDLAQSRVEHFKARVISGLDKNKSLDK 406


>gi|194246516|ref|YP_002004155.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
 gi|193806873|emb|CAP18302.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
          Length = 531

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 147/371 (39%), Gaps = 36/371 (9%)

Query: 260 KIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
              QK L+ + F  PT  Q   I ++++          I Q   G+GKT    I +   +
Sbjct: 12  PQTQKALKELNFLKPTAIQNLVISEMIEGYD------IIGQAQTGTGKTFAFGIPIIEKI 65

Query: 319 E---AGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHG 374
           +      Q++I+ P   LA Q ++  KK  +   +I + +I G      + K LE     
Sbjct: 66  DLNIKQTQSLILCPTRELALQVFQEFKKLIKFYVEIKIAVIYGGESYIKQFKVLET---- 121

Query: 375 QAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
           + HIII T     D ++  K        L L   DE    G Q+ L   L +       +
Sbjct: 122 KPHIIIATPGRVIDLLERKKIDFSGLKILTLDEADEMLNMGFQEALETILQKIPKKRQTV 181

Query: 425 LMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT  P  + +      +  + K+ +K      ++     +   D++   ++++  E 
Sbjct: 182 LFSATLPPTIQKIANKYQNNPKVLKVYQKNIAVSSVQQFYFLVKEFDKLKLLVRLLDLEN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I          N +  V+  N+  +    S+  +HG +    ++ VM++F+N   
Sbjct: 242 PNSVIIFA--------NTKKDVDEINAYLQENNFSVDFLHGDLKQNQRQQVMNNFRNQKI 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K+LIAT V   GID+   +++I  +        +H++ GR GR            P    
Sbjct: 294 KILIATDVAARGIDISSITMVINYDLSRQNEIYVHRI-GRTGRAGLKGLAYSFVAPSKLS 352

Query: 603 NSYTRLSVLKN 613
              +  + LK 
Sbjct: 353 QLKSLENYLKE 363


>gi|126325503|ref|XP_001378186.1| PREDICTED: similar to helicase like protein 2 [Monodelphis
           domestica]
          Length = 829

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/379 (18%), Positives = 140/379 (36%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + +   G          
Sbjct: 369 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKE 422

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 423 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 481

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT------QK 417
                H+++ T     D ++  K        L+L   D     G + +++         +
Sbjct: 482 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPQ 538

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 539 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADK-RSF 596

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 597 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 650

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 651 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 709

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 710 FFNDRNINITKDLLDLLVE 728


>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 518

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 87/437 (19%), Positives = 162/437 (37%), Gaps = 60/437 (13%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           +  + F   T  Q  +I   L           I Q   G+GKT    + +   +   E  
Sbjct: 17  ITELGFEEATPIQAKSIPIALSGRD------LIGQAQTGTGKTAAFGLPLINKIPKEEDR 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A++M P   LA Q  E I K ++        I G      + +AL++    +  IIIG
Sbjct: 71  IVALVMTPTRELAIQVAEEIGKLSRFKGTRSLPIYGGQDIVRQIRALKK----KPQIIIG 126

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I    + L  V        DE    G    ++   K               +
Sbjct: 127 TPGRLLDHINRKTIKLDDVKTVVLDEADEMLDMGFMDDIQSILKLVPED---------RQ 177

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    +I K+ ++   + P    +IP      +I++  + + E +K   +   ++
Sbjct: 178 TMLFSATMPANIQKLAQQFL-KNPEHVSVIPKQVSAPLIDQAYIEVHERQKFDALTRLLD 236

Query: 494 EKK---ESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +       F     R + L E       S   +HG +S   +++VM  F++G+  +L+A
Sbjct: 237 MESPELAIVFGRTKRRVDELSEALQKQGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVA 296

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN---- 603
           T V   G+DV   + ++  +      + +H++ GR GR  +         P    +    
Sbjct: 297 TDVAARGLDVSGVTHVVNFDLPQDPESYVHRI-GRTGRAGKEGVAWSFVTPREMDHLRFI 355

Query: 604 --------SYTRLSVLKNTEDGFL--IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
                   +   L  +    +G    IAE  ++  + GE+     +      I   E +D
Sbjct: 356 ERITRHKIARKPLPSIAEAIEGKQRIIAERLIELVENGEL-----NENKGIAIQLLEQYD 410

Query: 654 SLLEIARKDAKHILTQD 670
           S+  +A   A  ++T D
Sbjct: 411 SVNLLA--AAFKLITGD 425


>gi|162448970|ref|YP_001611337.1| ATP-independent RNA helicase [Sorangium cellulosum 'So ce 56']
 gi|161159552|emb|CAN90857.1| ATP-independent RNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 624

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/356 (21%), Positives = 132/356 (37%), Gaps = 41/356 (11%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           +L  + +  PT  Q  AI  +L           + Q   G+GKT    + +   +E GG+
Sbjct: 22  VLAELGYEEPTPIQREAIPHLLTGRD------LLGQAATGTGKTAAFALPLLQRLEIGGE 75

Query: 324 ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                 A+++ P   LA Q  E + +Y +   + V  + G  P   + +AL R      H
Sbjct: 76  PPRLPEALVLVPTRELAMQVAEAMHRYGRRLGVQVLSVYGGQPFGQQLRALRR----GVH 131

Query: 378 IIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQ--RLKLTQKATAPHVLLMT 427
           +++ T     D I    L L  +        DE    G  +     L+    A   +L +
Sbjct: 132 VVVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLDMGFAEALEEILSATPGARQTVLFS 191

Query: 428 ATPIPRTLVLTSLGDIDISKIT-----EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           AT  PR   +      +  ++        P     ++     + R  +     +V+  E 
Sbjct: 192 ATLPPRIAAIAGRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRAHKSAALTRVLDMED 251

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  +  +         R+ V+               +HG  S   ++ VM  F+ GT 
Sbjct: 252 PSSAILFCRT--------RNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRAGTA 303

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +LL+AT V   G+D+   S +I  +        +H++ GR GR     + I L  P
Sbjct: 304 ELLVATDVAARGLDIEHVSHVINYDVPCAPEVYVHRI-GRTGRAGREGAAITLVEP 358


>gi|114704563|ref|ZP_01437471.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Fulvimarina pelagi HTCC2506]
 gi|114539348|gb|EAU42468.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Fulvimarina pelagi HTCC2506]
          Length = 508

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 141/363 (38%), Gaps = 44/363 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI   L+      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 24  QPTPIQAEAIPHALE------RRDVLGIAQTGTGKTASFVLPMLTMLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   +Y +  ++ V ++ G M    + K L+R       ++I T   
Sbjct: 78  IIEPTRELAAQVEESFARYGKEQKLNVALLIGGMSFEEQDKKLDR----GCDVLIATPGR 133

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D  +  KL+L  V     DE  R      +   +      +L  T     +TL  ++ 
Sbjct: 134 LLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIE--RICKLLPFT----RQTLFFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE------ 494
              +I+K+T++   + P++  +         +E  + +++ G K Y    ++ +      
Sbjct: 188 MPPEITKLTQQFL-QNPVRVEVAKPASAALTVE--QRLVASGAKDYDKRARLRDLLRANE 244

Query: 495 ------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    +  R V   F SL +H   S   +HG M    + +++ +F+    +LL+A+
Sbjct: 245 DVTNAIIFCNRKRDVSTLFRSLEKHG-FSAGALHGDMDQRARMTMLHNFREDKLQLLVAS 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+   S +   +        +H++ GR GR         L     +K+     
Sbjct: 304 DVAARGLDIPAVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGKAFTLVTKSETKHLDAIK 362

Query: 609 SVL 611
            ++
Sbjct: 363 KLI 365


>gi|206603692|gb|EDZ40172.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 444

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 74/348 (21%), Positives = 128/348 (36%), Gaps = 40/348 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ------AV 325
           SPT  Q+ +I  ++           +     G+GKT   L+ +   +  G +      A+
Sbjct: 23  SPTPIQKQSIPHVIDGRD------LLGIAQTGTGKTGGFLLPVLHKIAEGRRHGIRNRAL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +++P   LA Q ++  K Y +       ++ G +    + + L+R       I++ T   
Sbjct: 77  VLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLKRNW----DIVVATPGR 132

Query: 386 FQDSIQYYKLILVI-----VDEQHRFGVQQRLKLT-----QKATAPHVLLMTATPIPRTL 435
             D ++   L L       +DE  R      L        Q       LL +AT  PR  
Sbjct: 133 LLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQSLLFSATCPPRIQ 192

Query: 436 VLTSLGDIDISKITEKPA--GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L +    D   +  +P   G   I    I ++   + +  LK VL EGK         E
Sbjct: 193 ELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLDEGKS--------E 244

Query: 494 EKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             +   F         L      +      +HG  S   +  V+  F+ G  K+L+AT V
Sbjct: 245 TGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVLVATDV 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   + +I  +        +H++ GR GR       +  +HP
Sbjct: 305 AARGLDIDGITHVINYDLPQTAEDYVHRI-GRTGRAGRTGRALSFFHP 351


>gi|156977147|ref|YP_001448053.1| hypothetical protein VIBHAR_05933 [Vibrio harveyi ATCC BAA-1116]
 gi|156528741|gb|ABU73826.1| hypothetical protein VIBHAR_05933 [Vibrio harveyi ATCC BAA-1116]
          Length = 421

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 144/374 (38%), Gaps = 45/374 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-----QAVI 326
           +PT  QE +I  +L+          +     G+GKT    + +  +V+        QA+I
Sbjct: 29  TPTPVQEKSIPPVLEGKD------LLAAAQTGTGKTAAFGLPIIQSVQQKKRNGAPQALI 82

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  + + +Y  NT + +  + G      ++K LE      A I+I T    
Sbjct: 83  LVPTRELAQQVMDNLTQYAANTDLKIVCVYGGTSIGVQKKKLEE----GADILIATPGRL 138

Query: 387 QDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            D +        +   L+L   D     G    L+   +               +T++ +
Sbjct: 139 LDHLFNGNVIIAKTGILVLDEADRMLDMGFWPDLQRILRRLPQD---------KQTMLFS 189

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +  +  I  I  K     P++  + P N   E ++++   + + +K   +   I  +   
Sbjct: 190 ATFEKRIKTIAYKLMD-SPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQ 248

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +   +      +        I+G  S   ++  +D FK G  + LIAT V  
Sbjct: 249 QVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKAGKVRALIATDVAA 308

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ +   ++  +        +H++ GR GR  +    + L    +S++    L+ ++
Sbjct: 309 RGLDIQELEQVVNFDMPFKAEDYVHRI-GRTGRARKSGLAVSL----MSRDEEYLLTAIE 363

Query: 613 NTEDGFLIAEEDLK 626
           N  D   + +E L+
Sbjct: 364 NLLDQ-RLPQEWLE 376


>gi|255524857|ref|ZP_05391806.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|255511427|gb|EET87718.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
          Length = 375

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 78/368 (21%), Positives = 135/368 (36%), Gaps = 37/368 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  Q  +I  I      KN    I++   G+GKTL  L+ +   +       QA+I+ 
Sbjct: 23  EPTPVQAESISLI------KNGRDVIVESQTGTGKTLAFLLPIFENISTKVDAVQALILT 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  Q   I +    G      + K L+       H+II T     D
Sbjct: 77  PTRELALQITEEALKLKQAKDINILAAYGGKDIGSQLKKLKT----GIHLIIATPGRLLD 132

Query: 389 SIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            ++       KL   ++DE  +        L         ++   +   +TL  ++  + 
Sbjct: 133 HLERKTIDLSKLKTFVLDEADQM------LLMGFKNDVETIIKETSKKRQTLCFSATINS 186

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNF 500
           D+ ++  +   ++P+   I       + I++  V  ++ +K   +C  + +        F
Sbjct: 187 DVKRLAYRY-TKEPLAVTINKEEVTLDAIKQQVVETTDRRKQDALCTVLNQDNPYMAIIF 245

Query: 501 RSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                R + L             +H  +    +E +M +F+NG  + LIAT V   G+D+
Sbjct: 246 CRTKRRVDELEVSLYKRGCDCKKLHSDILQSKRERIMKAFRNGDFQYLIATDVASRGLDI 305

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              S I   +      + +H++ GR GR  E     L   P            +K     
Sbjct: 306 SGVSHIYNYDIPESAESYIHRI-GRTGRAGEEGYTCLFIDPKDRLRLEEIEKAIK----- 359

Query: 618 FLIAEEDL 625
           F I   DL
Sbjct: 360 FKIPRRDL 367


>gi|224437667|ref|ZP_03658614.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818]
 gi|313144114|ref|ZP_07806307.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818]
 gi|313129145|gb|EFR46762.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818]
          Length = 513

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 78/347 (22%), Positives = 134/347 (38%), Gaps = 45/347 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  Q  +I  +LQ          I Q   G+GKT    I +  A+    +  A+++ P
Sbjct: 40  SPSPVQAQSIPIVLQGKD------LIAQAQTGTGKTAAFSIPILNALSRNKEIEALVITP 93

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E + K  +  +I    + G      +   LE+    +  ++I T     D 
Sbjct: 94  TRELAMQISEEVLKLGRFGRIKTICMYGGQSIKRQCDLLEK----KPKVMIATPGRLLDH 149

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVL 437
           +Q  +        ++L   DE    G                  LL +AT P P + L L
Sbjct: 150 LQNGRIENFAPKVVVLDESDEMLDMGFLDDIEEIFKFLPNTHQTLLFSATMPEPIKNLAL 209

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK-- 495
             L   +  KIT              P +  ++ IE+   +++EG++   I   +E +  
Sbjct: 210 KILDKPEFVKIT--------------PTDITNKDIEQQYYIINEGERDEAIVRLLETQNP 255

Query: 496 -KESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            K   F    +  ++L             +HG M   D+ + + +FK    +LL+AT V 
Sbjct: 256 TKSIIFTRTKKEADALATRLVTKGFKAMALHGDMEQWDRRTAIKAFKENEIELLVATDVA 315

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             G+D+ D S +   +      + +H++ GR GR  +    I L  P
Sbjct: 316 SRGLDISDVSHVFNYHIPLNPESYVHRI-GRTGRAGKKGVAITLATP 361


>gi|198452778|ref|XP_001358938.2| GA10214 [Drosophila pseudoobscura pseudoobscura]
 gi|198132073|gb|EAL28081.2| GA10214 [Drosophila pseudoobscura pseudoobscura]
          Length = 738

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 133/378 (35%), Gaps = 41/378 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       +           +     GSGKTL  ++     +          G  
Sbjct: 318 EPTPIQAQGWPIAMSG------ANFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPI 371

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  ++ +    + G  P+  + + L+R       I+I T 
Sbjct: 372 ALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE----IVIATP 427

Query: 384 ALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D +        +   +++DE  R          +K  +         P  +TL+ +
Sbjct: 428 GRLIDFLSSGGTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR------PDRQTLMWS 481

Query: 439 SLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    ++ ++ E   G      +    +   + I +V+E       E K    +    + 
Sbjct: 482 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKEEKLKSLLSDIYDT 541

Query: 495 KKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           +  V+        F      IHG  S  +++ V+  F++G   +L+A
Sbjct: 542 SENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 601

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV     +I  +        +H++ GR GR     +    +    +K +   
Sbjct: 602 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRI-GRTGRSNTKGTSFAFFTKNNAKQAKAL 660

Query: 608 LSVLKNTEDGFLIAEEDL 625
           + VL+        A E+L
Sbjct: 661 VDVLREANQEINPALENL 678


>gi|258653503|ref|YP_003202659.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258556728|gb|ACV79670.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
           44233]
          Length = 607

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 144/364 (39%), Gaps = 35/364 (9%)

Query: 267 RNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQ 323
           +++ F +PT  Q +AI  +L                 G+GKT    + + AA++   G Q
Sbjct: 43  KDLGFATPTAIQAAAIPALLAGRDITGV------AQTGTGKTAAFGLPLLAAIDPTPGVQ 96

Query: 324 AVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           A+++ P   LA Q  + I  +      + V  I G      +R AL       A +++GT
Sbjct: 97  ALVLCPTRELAVQVADAISSFATALPDVSVIAIYGGTGFLPQRAALRA----GAQVVVGT 152

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP 432
                D ++   L        +L   DE  R G  + +   L+    +    L +AT  P
Sbjct: 153 PGRIIDHLERGTLDLSGLRFLVLDEADEMLRMGFAEDVDRILSDAPNSRQAALFSATMPP 212

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             R++    + +     ++ + +    ++ +   +   D+V    + +      A  +  
Sbjct: 213 AIRSIAAKHMTNPVDIAVSRQSSTVDSVRQIYAVVPFRDKVDALTRFLQVTEGDAAIVFV 272

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           + +E  +     ++ R          S A+++G +   ++E +++  ++G   +L+AT V
Sbjct: 273 RTKEACDQVGTDLLAR--------GVSAAVMNGDVPQKEREKIIERLRDGRLDVLVATDV 324

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV    +++  +A     A +H++ GR GR     + +  + P            
Sbjct: 325 AARGLDVDRIDLVVNFDAPGEPEAYVHRI-GRTGRAGRTGTALTFFTPREMGRLRAIERA 383

Query: 611 LKNT 614
            + T
Sbjct: 384 TRGT 387


>gi|182413406|ref|YP_001818472.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177840620|gb|ACB74872.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 403

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 123/348 (35%), Gaps = 21/348 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
            PT  Q  AI  +L+          I     G+GKT    + +   +   G+   +I+ P
Sbjct: 25  EPTPIQAQAIPIVLKG------GDVIGSAQTGTGKTAAFALPIIQRLSTHGRLRCLILEP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E   K+ + T + V I+ G +    +   L+R       I+  T     D 
Sbjct: 79  TRELALQVEEAFHKFAKFTDLRVTIVYGGVGYGKQTSDLKRGM----DILAATPGRLLDH 134

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +      L  V E        R+           ++       +TL  ++    ++ ++ 
Sbjct: 135 LGQGNCSLEDV-EILVLDEVDRMLDMGFLPDVRKIVQRCPKARQTLFFSATLPPELEQLA 193

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSV 503
              A   P K  I  +    E +      +   +K   +   +E  +          R  
Sbjct: 194 G-WALHNPTKVEIGRVRSPAETVSHGFYPVVASQKFDLLQLLLERTEFKSVLIFCRTRMG 252

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +R     +    ++ ++H   S  ++   +D FK+G  ++L+AT +   G+D+   S +
Sbjct: 253 ADRIAHRLKTKGHTVGVMHSDRSQRERIEALDGFKSGKFEVLVATDIAARGLDIAGVSHV 312

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           I  +        +H++ GR GR         L      +++ +    +
Sbjct: 313 INYDVPENPEDYVHRI-GRTGRAHHTGDAFTLVTEEDVRDARSIERYM 359


>gi|332028827|gb|EGI68856.1| ATP-dependent RNA helicase bel [Acromyrmex echinatior]
          Length = 704

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/389 (17%), Positives = 138/389 (35%), Gaps = 49/389 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQ------- 323
            PT  Q+ AI  I++      R   +     GSGKT   L+ +   + E+G +       
Sbjct: 235 KPTPVQKYAIPIIIE------RRDVMACAQTGSGKTAAFLVPILNQIYESGPRPPPPQAN 288

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                      +++AP   LA Q Y+  +K+   +++   ++ G      + + L+R   
Sbjct: 289 SSGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGSNIVDQMRELDR--- 345

Query: 374 GQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+++ T     D +   K+ L     +++DE  R          Q         M  
Sbjct: 346 -GCHLLVATPGRLVDMLGRGKIGLHNCRFLVLDEADRMLDMGFEP--QIRRIVQEDNMPP 402

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++    +I  +  +      I   +  +    E I +  V + E  K  ++
Sbjct: 403 TGERQTLMFSATFPKEIQMLA-RDFLSNYIFLAVGRVGSTSENITQKIVWVEEHDKRSYL 461

Query: 489 CPQIEEKKESNF------------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              ++    S+             +   +            +  IHG  +  ++E  +  
Sbjct: 462 LDLLQASNFSDPTAESLTLVFVETKKGADMLEEYLASMGYPVTSIHGDRTQREREEALRR 521

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G   +L+AT V   G+D+     +I  +        +H++ GR GR   +      +
Sbjct: 522 FRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRI-GRTGRMGNLGLATSFF 580

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           +          +S+L           +D+
Sbjct: 581 NHKNHNLVRDLVSLLIEANQELPPWLDDM 609


>gi|118374919|ref|XP_001020647.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89302414|gb|EAS00402.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 396

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/345 (21%), Positives = 134/345 (38%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ AIK I++          I+Q   G+GKT V  IA    V+      Q ++++
Sbjct: 45  KPSAVQQRAIKPIIKGRDV------IVQSQAGTGKTGVFTIAALQIVDKNLREPQVIVLS 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q  +          I+V    G          LE+       II GT     D
Sbjct: 99  PTRELAEQTQKVCLALGDYMNILVHCCIGGKSMDDDINRLEK----GVQIISGTPGRIYD 154

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            IQ   L        +L   D+    G ++++    +        ++++AT     L +T
Sbjct: 155 MIQRRHLKTRNVKMLVLDEADQMLSMGFKEQVYDIYRYLPHKNQNVVVSATLPQEILEMT 214

Query: 439 SLGDIDISK--ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK--KAYWICPQIEE 494
           +    D  K  +       + IK   I + + +   E L  + +     +A   C  I+ 
Sbjct: 215 NKFMNDPIKFLVKRDELTLEGIKQFFILVEKEEWKFETLCDLYNTITITQAVIFCNTIKA 274

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            K  + +   + F         S+  IHG ++  +++ +M  F+NG  ++L+AT +   G
Sbjct: 275 VKWLSGKMREQNF---------SLCSIHGELNQKERDKIMQDFRNGEYRVLVATDIWGRG 325

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +DV   S++I  +        +H++ GR GR       I      
Sbjct: 326 LDVQQVSVVINYDLPTNRELYIHRI-GRSGRFGRKGVAINFVKNE 369


>gi|156064127|ref|XP_001597985.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|160380609|sp|A7E449|DBP2_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp2
 gi|154690933|gb|EDN90671.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 572

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 83/435 (19%), Positives = 153/435 (35%), Gaps = 57/435 (13%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI------ 265
           P+  K F    P     + +++               +   IP  VE             
Sbjct: 107 PKFEKSFYKEDPVVAARSEEDVAKF----RAQHNIAVQGPNIPKPVETFDEAGFPAYVMT 162

Query: 266 ---LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-- 320
               +  P +PT  Q       L           +   + GSGKTL   +     + A  
Sbjct: 163 EVKAQGFP-APTPIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQP 215

Query: 321 ------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                 G   +++AP   LA Q  + I K+ ++++I    + G +P+  + + L +    
Sbjct: 216 LLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQIRDLAK---- 271

Query: 375 QAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVL 424
              + I T     D I+  K        L+L   D     G   Q R  L Q        
Sbjct: 272 GVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRPDRQTC 331

Query: 425 LMTATPIPRTLVLTSLGDIDISKIT----EKPAGR--KPIKTVIIPINRIDEVIERLKVV 478
           + +AT       L S    D  ++     E  A      I  V+    + D++ + L+ +
Sbjct: 332 MWSATWPKEVRALASDYLNDFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKHLEKI 391

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           + +      I            R   +    L +    +++I HG     +++ V++ FK
Sbjct: 392 MEDKDNKILIFT-------GTKRVADDITRFLRQDGWPALSI-HGDKQQNERDWVLNEFK 443

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +++AT V   GIDV + + +   +  +     +H++ GR GR  +  + I L+  
Sbjct: 444 TGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRI-GRTGRAGQKGTAITLFTT 502

Query: 599 PLSKNSYTRLSVLKN 613
              K +   ++VL  
Sbjct: 503 DNQKQARDLVNVLTE 517


>gi|125979227|ref|XP_001353646.1| GA19578 [Drosophila pseudoobscura pseudoobscura]
 gi|54642411|gb|EAL31160.1| GA19578 [Drosophila pseudoobscura pseudoobscura]
          Length = 812

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/379 (17%), Positives = 136/379 (35%), Gaps = 39/379 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              + ++ + + +     PT  Q  A+   L           I     GSGKT   +  +
Sbjct: 280 FGFDEQLIKAVRKAEYTQPTPIQAQAVPTALAGRD------IIGIAKTGSGKTAAFIWPL 333

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   +I+AP   L+ Q Y   KK+ +   I V    G   +  + K
Sbjct: 334 LMHLMDQRELKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSK 393

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAP 421
           ALE+     A I++ T     D ++       ++  +++DE  R          +     
Sbjct: 394 ALEQ----GAEIVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNH 449

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                   P  +TL+ ++     I ++  +     P++ V   +N  ++ I +   V   
Sbjct: 450 VR------PDRQTLLFSATFKKRIERLA-RDVLSDPVRIVQGDLNEANQDITQSVYVFPN 502

Query: 482 GKKAY--WICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
             + +   +C  ++   E         ++  E   +       +  ++HG M   D+  V
Sbjct: 503 PLQKWNWLLCHLVKFLSEGSVLIFVTKKADAETVANNLLVKEHNCLLLHGDMDQADRNKV 562

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  FK   C +L+AT V   G+D+     ++  +         H++ GR GR  E  +  
Sbjct: 563 ITQFKRKECDILVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRI-GRTGRAGEKGNAF 621

Query: 594 LLYHPPLSKNSYTRLSVLK 612
            L      + +   +  L+
Sbjct: 622 TLVTDKDKEFAGHLVRNLE 640


>gi|255261539|ref|ZP_05340881.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
 gi|255103874|gb|EET46548.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
          Length = 446

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 133/355 (37%), Gaps = 27/355 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q  AI   +        ++ + Q   G+GKT    + M  A+   G        +
Sbjct: 23  DPTPIQAQAIPHAMNG----RDVMGLAQ--TGTGKTAAFGLPMIDALMRAGVKPEPKTVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA+Q  + ++ YTQ + + V ++ G      + K LER       +++ T 
Sbjct: 77  GLILAPTRELAKQISDNLRDYTQGSHLKVALVVGGAGIVAQMKRLER----GVDLLVATP 132

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    L L            Q L L        +  + A    +T++ ++    
Sbjct: 133 GRLIDLLDRKALSLSETHYLVLDEADQMLDLGFIHALRKIAPLLA-DDRQTMLFSATMPK 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---- 499
            ++++      R P++  + P  +  + IE+    +++ +K   +   + + K       
Sbjct: 192 QMNELAAAYL-RSPVRVEVNPPGKAADKIEQSLHYIAKSEKPKLLIELLGKHKGERAIVF 250

Query: 500 --FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   E+     E        IHG  S   +E  + +F+ G   +L+AT V   G+D+
Sbjct: 251 GRTKHGCEKLYKTLEKAGFDAVSIHGNKSQGQRERAIVAFREGKVTVLVATDVAARGLDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            D   +   +  +     +H++ GR  R       I    P       +   V+K
Sbjct: 311 PDVKHVYNFDLPNVPENYVHRI-GRTARAGAEGMAIAFCAPDEMSELRSIQKVMK 364


>gi|291533399|emb|CBL06512.1| RecG-like helicase [Megamonas hypermegale ART12/1]
          Length = 268

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 103/248 (41%), Gaps = 23/248 (9%)

Query: 13  LSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTI 72
           +   +GVG K +  L K+            DL+ Y+P  + D+     I  I    +V I
Sbjct: 7   IQFLKGVGPKKAQALKKL------GIENIYDLITYYPRRYEDQSQIVPIGRIKVGEVVNI 60

Query: 73  TGYISQHSSFQLQKR-RPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGR-KITVTGKIK 130
            G I   +    ++  +   I+L D TG + L FF +  + LK      +  + V GK+ 
Sbjct: 61  QGKIMAMAEKNTRRGLKLLTIMLADDTGVVQLNFFNQ--DYLKKKLKVQKSSLFVHGKVG 118

Query: 131 KLKNRI-IMVHPHYI---------FHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALS 180
                   +     I           + +++N      +Y++P  +    F+ +I +A +
Sbjct: 119 YAYGGYGQLAISQIISFDIINNDNIDSEENINPCAFMPIYTIPDYIKPKDFRNLIEQACA 178

Query: 181 RLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIAL 240
           +  ++ + +   + +K        A   IH P+  ++ E    A++ L ++EL   Q  L
Sbjct: 179 QDILVKDVVPNFIREKYDLWDKQTAIKKIHFPQTRQELE---KAKKSLIFEELFLIQAGL 235

Query: 241 LLMRKQFK 248
           LL++KQ +
Sbjct: 236 LLLKKQHQ 243


>gi|306843833|ref|ZP_07476431.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
 gi|306275911|gb|EFM57627.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
          Length = 482

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 138/365 (37%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE------RKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTL 435
             D  +  KL+L  V     DE  R      +   ++           L  +AT  P   
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEIT 193

Query: 436 VLTSLGDIDISKI-------TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            LT        +I       T K   ++ +K+     ++   + + ++      K A   
Sbjct: 194 KLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEGDTLKNAIIF 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         + V E F SL  H       +HG M    + +++ SFK+G  +LL+A+
Sbjct: 254 CNR--------KKDVSELFRSLTRH-EFDAGALHGDMDQRARMAMLSSFKDGKLRLLVAS 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S +   +        +H++ GR GR         +     +K      
Sbjct: 305 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 609 SVLKN 613
           S++  
Sbjct: 364 SMIGE 368


>gi|70663482|emb|CAJ15140.1| PL10a protein [Platynereis dumerilii]
          Length = 771

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 133/372 (35%), Gaps = 43/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ A+  I      K +   +     GSGKT   L+ + + +   GQ        
Sbjct: 311 KPTPVQKHAMPII------KKKRDLMACAQTGSGKTASFLVPVLSQMFLDGQPEFIREQN 364

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                     A+++AP   LA Q YE  +K+   + +   ++ G      + + L     
Sbjct: 365 NRNNRKQYPIALVLAPTRELASQIYEEARKFAYRSHVRPCVVYGGADIGAQMRDLPER-- 422

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+++ T     D ++  K+ L  +     DE  R          ++        M  
Sbjct: 423 -GCHLLVATPGRLVDMLERGKIGLDHIRFVVLDEADRMLDMGFEPQIRRIVEKDT--MPP 479

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   RTL+ ++    +I  +  +      I   +  +    E I +  V + E  K  ++
Sbjct: 480 TGDRRTLMFSATFPKEIQILA-RDFLHNYIFLAVGRVGSTSENITQKVVWVEEPDKRSFL 538

Query: 489 CPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
              +               +   +  ++   +     A IHG  S  ++E  + +F++G 
Sbjct: 539 LDLLNASGPDSLTLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKEREEALRNFRSGK 598

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++    
Sbjct: 599 TPVLVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATSFFNDKNK 657

Query: 602 KNSYTRLSVLKN 613
                 + +L  
Sbjct: 658 NIVRDMVDLLIE 669


>gi|332662156|ref|YP_004444944.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332330970|gb|AEE48071.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 380

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 133/363 (36%), Gaps = 40/363 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------Q 323
           PT  Q+ AI  +L+      R   +     G+GKT    I +   +             +
Sbjct: 24  PTPIQQKAIPVLLE------RKDLLGCAQTGTGKTAAFAIPILQLLYQDKGLSKGPRQLK 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  E    Y +N  +   +I G + Q+ + +A+     G   I++ T 
Sbjct: 78  ALILTPTRELAIQISESFGAYGRNCGLKHAVIFGGVNQSKQVEAIR----GGLDILVATP 133

Query: 384 ALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT-LVL 437
               D +    L L  +     DE  R      +   ++       ++T  P  R  L  
Sbjct: 134 GRLLDLMNQQLLSLQHINTFVLDEADRMLDMGFVHDVKR-------IITRLPQRRQSLFF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I K+        P+K  + PI+   E++E++   + +  K   +   +     
Sbjct: 187 SATMPPEIQKLANT-ILSNPVKVEVSPISSTTEMVEQMVYFVEKRDKRNLLIQLLRSPNV 245

Query: 498 S------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   ++ N            IHG  S   ++S ++ FK G  ++L+AT + 
Sbjct: 246 KSALVFTRTKHGADKINRDIVKAGIRSNAIHGNKSQNARQSALNGFKEGKLRVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV + S +I  +  +     +H++ GR GR       +                ++
Sbjct: 306 ARGIDVDNLSHVINYDLPNIPETYVHRI-GRTGRAGASGIALSFCDSEERAYLRDISKLI 364

Query: 612 KNT 614
              
Sbjct: 365 AKN 367


>gi|306840451|ref|ZP_07473211.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
 gi|306289585|gb|EFM60800.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
          Length = 482

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 138/365 (37%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE------RKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTL 435
             D  +  KL+L  V     DE  R      +   ++           L  +AT  P   
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEIT 193

Query: 436 VLTSLGDIDISKI-------TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            LT        +I       T K   ++ +K+     ++   + + ++      K A   
Sbjct: 194 KLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEGDTLKNAIIF 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         + V E F SL  H       +HG M    + +++ SFK+G  +LL+A+
Sbjct: 254 CNR--------KKDVSELFRSLTRH-EFDAGALHGDMDQRARMAMLSSFKDGKLRLLVAS 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S +   +        +H++ GR GR         +     +K      
Sbjct: 305 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 609 SVLKN 613
           S++  
Sbjct: 364 SMIGE 368


>gi|254719036|ref|ZP_05180847.1| ATP-dependent RNA helicase DDX17 [Brucella sp. 83/13]
 gi|265984026|ref|ZP_06096761.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|264662618|gb|EEZ32879.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 482

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 138/365 (37%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE------RKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTL 435
             D  +  KL+L  V     DE  R      +   ++           L  +AT  P   
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEIT 193

Query: 436 VLTSLGDIDISKI-------TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            LT        +I       T K   ++ +K+     ++   + + ++      K A   
Sbjct: 194 KLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEGDSLKNAIIF 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         + V E F SL  H       +HG M    + +++ SFK+G  +LL+A+
Sbjct: 254 CNR--------KKDVSELFRSLTRH-EFDAGALHGDMDQRARMAMLSSFKDGKLRLLVAS 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S +   +        +H++ GR GR         +     +K      
Sbjct: 305 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 609 SVLKN 613
           S++  
Sbjct: 364 SMIGE 368


>gi|308182422|ref|YP_003926549.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4]
 gi|308064607|gb|ADO06499.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4]
          Length = 492

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNTTNTDITQRFYVINEHERAEAIMHLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ + + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|307189252|gb|EFN73695.1| Probable ATP-dependent RNA helicase DDX46 [Camponotus floridanus]
          Length = 1028

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 150/408 (36%), Gaps = 44/408 (10%)

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI--LRNIPFS-PTKSQESAIKDIL 285
              E+   ++  + ++ +   +        G   +++  L+ + +  PT  Q  AI  I+
Sbjct: 342 EEVEMYKEELEGIRVKGKGCPKPIKSWAQCGVTKKELEVLKKLGYEKPTPIQCQAIPAIM 401

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQH 337
                      I     GSGKTL  L+ M   +          G  A+IM P   L  Q 
Sbjct: 402 SGRD------LIGIAKTGSGKTLAFLLPMFRHILDQPPLADGDGPIALIMTPTRELCMQI 455

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
               KK+T++  +    + G    + +   L+R     A II+ T     D +       
Sbjct: 456 GRDSKKFTKSLGLSHVCVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAANSGRV 511

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
               ++  V++DE  R                  ++    P  +T++ ++     +  + 
Sbjct: 512 TNLRRVTYVVLDEADRMFDMGFEPQVM------RIMENVRPDRQTVLFSATFPRQMEALA 565

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-------NFRS 502
            +    +P++  +   + + + +E+  VVL E +K Y +   +   ++        + + 
Sbjct: 566 RR-ILTRPVEVQVGGRSVVCKDVEQHVVVLEEDQKFYKLLEILGHYQDKGSIIIFVDKQE 624

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             +         + S   +HG +   D++S +  FK G  KLL+AT+V   G+DV    +
Sbjct: 625 NADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRTKLLVATSVAARGLDVKHLVL 684

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           ++  +  +     +H+  GR GR                + +   L  
Sbjct: 685 VVNYDCPNHYEDYVHR-CGRTGRAGNKGYAYTFITSEQERYAGDILRA 731


>gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555]
 gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016]
 gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555]
 gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 524

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 129/344 (37%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            P++ Q  +I  IL+          I Q   G+GKTL     M + +        A+I+ 
Sbjct: 26  EPSQIQAESIPVILEG------NDIIGQAQTGTGKTLAFGAPMLSKITPKNKHISALILT 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + + +  +  +I++  I G  P   + K+L+R      +I++GT     D
Sbjct: 80  PTRELAIQVNDELSRIAKFMKILLLPIYGGQPIERQIKSLKR----GINIVVGTPGRILD 135

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            +    L L  +        DE    G  + +           ++  + P  +TL+ ++ 
Sbjct: 136 HLHRKTLDLSNIEFLTIDEADEMLDMGFIEDI---------EEIIKASNPNRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               + ++  K          I       E  ++    +    +   +C  ++  +    
Sbjct: 187 MPDQVKRLASKYMSSNTKYITIAKNTLTVEKTKQYYYEIKHKDRFESLCRILDVDEPSSA 246

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+      +    ++  +HG M    + + +  FK G+   L+AT V   G
Sbjct: 247 IIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLDFLVATDVAARG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           IDV + S +I  +      + +H++ GR GR  +      L  P
Sbjct: 307 IDVENVSHVINYDLPQDTESYVHRI-GRTGRANKEGIAYSLVTP 349


>gi|328555607|gb|AEB26099.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           TA208]
 gi|328913984|gb|AEB65580.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           LL3]
          Length = 479

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 81/364 (22%), Positives = 136/364 (37%), Gaps = 39/364 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT+ Q   I   LQ      +   +++   GSGKT    I +       E   QA+I+ 
Sbjct: 24  EPTEVQRRVIPAALQ------KKDLVVKSQTGSGKTAAFGIPICELADWEENKPQALILT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I    +  +I    + G      ++  L++    ++H++ GT     D
Sbjct: 78  PTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQ----KSHVVCGTPGRVLD 133

Query: 389 SIQYYKLILV--------IVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP---RTLV 436
            I+   L L           DE    G  +Q   + Q      V ++ +  +P     L 
Sbjct: 134 HIEKGTLPLDRLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTMLFSATLPDDVEKLS 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            T + D ++ ++  +    K I+  +      D+      V+++E   +  I  + +E+ 
Sbjct: 194 RTYMKDPELIEVKAEGLTTKDIEHFVTRAAEEDKSSLLRDVLITENPDSCIIFCRTKERV 253

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                          +        IHG M   D+  VM+ FK G  + LIAT V   GID
Sbjct: 254 IQ--------LTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIATDVAARGID 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           + + S++I  +      + +H+  GR GR       I    P  S+           T  
Sbjct: 306 IENISLVINYDIPLEKESYVHR-TGRTGRAGHRGRAITFVTPSESRFLNDI-----ETYI 359

Query: 617 GFLI 620
           GF I
Sbjct: 360 GFRI 363


>gi|307202009|gb|EFN81574.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
          Length = 724

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 82/379 (21%), Positives = 141/379 (37%), Gaps = 45/379 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L        ++ I Q   GSGKTL  ++     +          G  
Sbjct: 130 EPTAIQAQGWPIAL----SGRDLVGIAQ--TGSGKTLAYILPATVHINHQPRLSRGDGPI 183

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LAQQ     + +  ++ I    I G  P+  + + LER       I I T 
Sbjct: 184 VLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQARDLER----GVEICIATP 239

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 240 GRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKE 299

Query: 434 TLVLTSLGDIDISKIT----EKPAGRKPIKTV-IIPINRIDEVIERLKVVL--SEGKKAY 486
              L      D  +I        A     + V I   +  +  + +L   +    G K  
Sbjct: 300 VQALAEDFLTDYIQINIGSLTLAANHNIRQIVEICQEHEKETKLSQLLREIGTERGSKMI 359

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                +E KK+ +     +   ++     S+I+I HG  S  +++ V+  F+NG   +L+
Sbjct: 360 IF---VETKKKVD-----DITKAIKREGWSAISI-HGDKSQPERDYVLSEFRNGKTMILV 410

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV D   +I  +  +     +H++ GR GR +   +    + P  ++ +  
Sbjct: 411 ATDVAARGLDVEDVKYVINFDYPNSSEDYIHRI-GRTGRCQSAGTAYAYFTPNNARQAKE 469

Query: 607 RLSVLKNTEDGFLIAEEDL 625
            ++VL+           D+
Sbjct: 470 LIAVLEEAGQAINPQLADM 488


>gi|293401901|ref|ZP_06646041.1| DEAD/DEAH box family ATP-dependent RNA helicase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304559|gb|EFE45808.1| DEAD/DEAH box family ATP-dependent RNA helicase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 580

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 79/360 (21%), Positives = 140/360 (38%), Gaps = 37/360 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           T  Q  +I  IL+          + + + G+GKT    I     V  G     A+I+ P 
Sbjct: 26  TDIQAQSIPCILEGKDV------LGRSNTGTGKTAAFGIPAIEKVIPGNKFPNALIICPT 79

Query: 331 GILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             L  Q    ++K+++    + +  I G  P   + + L+R       I++GT     D 
Sbjct: 80  RELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQIQLLKR----GCGIVVGTPGRIMDH 135

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           +    L L  V        DE    G ++ ++         + +M A    +T++ ++  
Sbjct: 136 LNRRTLKLQDVNMIILDEADEMLNMGFKEDIEEI-------LSMMPADNEHQTILFSATW 188

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ES 498
              I KITE+   + P++  I    R  + +E++      GKKA  +   +         
Sbjct: 189 PQAILKITEQF-QKDPVRVEIKSSQRTIDTVEQIYYEAPRGKKANALRVLLNHYDPDLCM 247

Query: 499 NFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F +  +  + L E           +HG M    +  VM+ F+NGT  +LIAT V   GI
Sbjct: 248 IFCNTKKMVDELCEELNKHDIKATSLHGDMKQEFRSRVMEQFRNGTSPILIATDVAARGI 307

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV D  +++  +        +H++ GR GR  +    I L      + +   +     T 
Sbjct: 308 DVDDIDLVVNFDIPQDMEYYIHRV-GRTGRAGKKGLAITLISGGKQRGAIKDVIRYTKTN 366


>gi|206576701|ref|YP_002238858.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae 342]
 gi|206565759|gb|ACI07535.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae 342]
          Length = 457

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 81/452 (17%), Positives = 172/452 (38%), Gaps = 46/452 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + S T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LNELGYLSMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQHIDPARFE 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +    I + ++ G  P   +R +L+       HII+
Sbjct: 72  TQSLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  + +        R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-QTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P    I  ++ +  + ++   V   GK A       + +     
Sbjct: 187 WPAAIAAISGR-VQRNPQTIEIDTVDALPAIEQQFFEVSRHGKIALLQHLLSQHQPASCV 245

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G+
Sbjct: 246 VFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARGL 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+   ++++           +H++ GR  R  E    I    P  ++ +     +L+ + 
Sbjct: 306 DIKSLALVVNFELAWDPEVHVHRI-GRTARAGEQGLAISFCAPEEAQRATILADMLQLSL 364

Query: 616 D------GFLIAEEDLKQ------------RKEGEILG--IKQSGMPKFLIAQPELHDS- 654
           +      G  IA    +              + G++LG      G     I +  +H + 
Sbjct: 365 NWLPAPTGNTIAPLTAEMATLCIDGGKKAKMRPGDVLGALTGDMGFDGADIGKITVHPAH 424

Query: 655 -LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
             + I +  A+    Q  +   ++G++ R+ L
Sbjct: 425 VYVAIRQNMAQKAYKQLQN-GKIKGKACRVRL 455


>gi|296170155|ref|ZP_06851752.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295895181|gb|EFG74896.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 566

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/359 (20%), Positives = 134/359 (37%), Gaps = 35/359 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q + I  ++           +     G+GKT    I + + ++      QA+++A
Sbjct: 35  SPTGIQAATIPALMAG------SDVVGLAQTGTGKTAAFAIPILSKIDVASKATQALVLA 88

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y  +   + V  I G      +   L R     A +++GT     
Sbjct: 89  PTRELALQVAEAFSRYGAHLPKVNVLPIYGGSSYTVQLAGLRR----GAQVVVGTPGRVI 144

Query: 388 DSIQYYKLILVIVD--------EQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVL 437
           D ++   L L  VD        E    G  + +   L++      V L +AT  P    L
Sbjct: 145 DHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFSATMPPAIRKL 204

Query: 438 TSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           T+    D  +++ K   A  + I    I +    ++    +V+  E  +A  +  +    
Sbjct: 205 TTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKMDALTRVLEVEPFEAMIVFVRT--- 261

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E           S A I+G +    +E  + + K+G   +L+AT V   G+
Sbjct: 262 -----KQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAARGL 316

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           DV   S ++  +  H   + +H++ GR GR     + +L   P             + T
Sbjct: 317 DVERISHVLNYDIPHDTESYVHRI-GRTGRAGRSGTALLFVSPRERHLLRAIEKATRQT 374


>gi|121945880|dbj|BAF44659.1| RNA helicase [Neobenedenia girellae]
          Length = 670

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 131/373 (35%), Gaps = 45/373 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ A+  I            +     GSGKT   LI M   +   G A        
Sbjct: 212 PTPVQKYAVPIIAAGRD------LMACAQTGSGKTAAFLIPMLNNMFVHGPADSLDRCNE 265

Query: 325 ----------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                     +++AP   LA Q Y+  KK++  + +   ++ G      +   L R  + 
Sbjct: 266 EDRRAQFPTGLVIAPTRELASQIYDEAKKFSYRSHVRPCVVYGGAAIKGQLSDLSRGCN- 324

Query: 375 QAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
              +I  T     D I   KL L       +DE  R                    M   
Sbjct: 325 ---VIFATPGRLIDIIDRGKLKLDCCRFLVLDEADRMLDMGFEPQI---REIIQRYMPNG 378

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              +TL+ ++     I  +  K   +  I   +  +    E I +  V + E  K   + 
Sbjct: 379 DNRQTLMFSATFPPQIQNLA-KDFLKSYIFLSVGRVGSTSENITQSLVWVEEVDKRNALL 437

Query: 490 PQIEEKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             I+  KE N        +   +       +   S++ IHG  +  ++E  + +F++G  
Sbjct: 438 DFIDFTKEDNLTLVFVETKRGADSLEEFLYNREFSVSSIHGDRTQDERERALKNFRSGKT 497

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +++AT V   G+D+ +   +I  +  +     +H++ GR GR   +      ++     
Sbjct: 498 PIMVATAVAARGLDIPNVKHVINYDLPNDIDEYVHRI-GRTGRVGNLGKATSFFNDKNKN 556

Query: 603 NSYTRLSVLKNTE 615
            +   + +L+   
Sbjct: 557 LARDLVELLEEAN 569


>gi|319937469|ref|ZP_08011874.1| helicase [Coprobacillus sp. 29_1]
 gi|319807309|gb|EFW03918.1| helicase [Coprobacillus sp. 29_1]
          Length = 520

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/336 (20%), Positives = 133/336 (39%), Gaps = 23/336 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMA 328
           SP+  QE +I  +L+          I Q   G+GKTL     + + ++  G+   A+I++
Sbjct: 26  SPSPIQEKSIPVLLEGQD------IIGQAQTGTGKTLAFGSVLLSKIQKEGKHVKALILS 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q +E +K+  + T + +  + G      + K L+R     A I++GT    QD
Sbjct: 80  PTRELALQIHEELKRIGKCTNLSIVSVFGGSDIERQIKDLKR----GADIVVGTPGRVQD 135

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTSLGDIDISK 447
            ++   L +  +D       +    L          ++ ATP   +T++ ++     I K
Sbjct: 136 LMRRRVLKINNID--FMVLDEADEMLNMGFVEDIETILKATPDNKQTVLFSATMPATIKK 193

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFR 501
           I         +   I    +    + +         K   +C  ++ ++          +
Sbjct: 194 IASNYMQDDYMHIQIKSKTKTASTVSQYYFETRPTNKFETLCRILDSRQMENTIIFCKTK 253

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             V+   +  +     +  +HG +S   + + +  FK+G  + L+AT V   GIDV + S
Sbjct: 254 RSVDEVVASMQQKHYDVEAMHGDLSQNQRTNTLKRFKSGHIQYLVATDVAARGIDVDNIS 313

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +I           +H++ GR GR  +      L  
Sbjct: 314 HVINYEMPQDEELYIHRI-GRTGRANKKGEAYSLVT 348


>gi|261368147|ref|ZP_05981030.1| cold-shock DEAD box protein A [Subdoligranulum variabile DSM 15176]
 gi|282569910|gb|EFB75445.1| cold-shock DEAD box protein A [Subdoligranulum variabile DSM 15176]
          Length = 395

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 145/367 (39%), Gaps = 36/367 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
           + + F+  T+ QE AI      M   + M  I +   G+GKT+   I + + V+      
Sbjct: 18  QAMGFTEMTEIQEKAIPL----MMDGHDM--IAKAPTGTGKTVAFGIPILSKVDPASLKP 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QAV+++P   LAQQ  + ++   Q    I +  + G      +++ L+        I++ 
Sbjct: 72  QAVVLSPTRELAQQIAQDLQNLAQFLPAIKIVCVYGGAGLDKQQRQLKA----GCQIVVA 127

Query: 382 THALFQDSIQYY--------KLILVIVDEQHRFG-VQQRLKLTQKATAPHVL-LMTATPI 431
           T     D  +++         ++L   DE    G  +    +         L + +AT  
Sbjct: 128 TPGRLMDHYRHHAIDVSDVETVVLDEADEMLNMGFYKDVRHIIDLMKHRKSLSMFSATIS 187

Query: 432 PRTLVLTSLGDIDISKITEKPAGR--KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              L +  L   + ++++ +P       I    +     D++ +  ++++SEG K   I 
Sbjct: 188 REVLDIGWLYQHNAAEVSVQPVEDSSPKIAQYKLLTTGRDKLADAAQIIISEGYKRVMIF 247

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +       +       ++  +HG +S  ++  +M  FK G   +L+AT 
Sbjct: 248 --------CNTKYNTGMLANQLARLNFNVDCLHGDLSQAERNRIMTRFKAGEIAVLVATD 299

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GIDV D   +I  +         H++ GR GR  +  +  L Y     K     L 
Sbjct: 300 VAARGIDVSDVDAVINYDVPEENEHYTHRI-GRTGRARKEGASYLFYTKEEQKRVDQLLR 358

Query: 610 VLKNTED 616
           + +N +D
Sbjct: 359 LTRNLDD 365


>gi|242787406|ref|XP_002481000.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500]
 gi|218721147|gb|EED20566.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500]
          Length = 543

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 78/366 (21%), Positives = 136/366 (37%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           +   + GSGKTL   +     + A        G  
Sbjct: 138 KPTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLSPGDGPI 191

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T 
Sbjct: 192 VLILAPTRELAVQIQTEISKFGRSSRIRNTCVYGGVPKGPQIRDLSR----GVEVCIATP 247

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G   Q R  ++Q        + +AT    
Sbjct: 248 GRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKE 307

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I           T    V+    + D++I+ L+ ++ + K    
Sbjct: 308 VRQLASDFLNDFIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMDDRKNKCL 367

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            R   +    L +    +++I HG     +++ V+  FKNG   +++A
Sbjct: 368 IFT-------GTKRVADDITRFLRQDGWPALSI-HGDKQQNERDWVLQEFKNGKSPIMVA 419

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV D + +I  +  +     +H++ GR GR     + I  +    SK +   
Sbjct: 420 TDVASRGIDVRDITHVINYDYPNNSEDYVHRI-GRTGRAGAKGTAITFFTTDNSKQARDL 478

Query: 608 LSVLKN 613
           +++L  
Sbjct: 479 VTILSE 484


>gi|24375277|ref|NP_719320.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24350080|gb|AAN56764.1|AE015812_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 535

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 130/346 (37%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQAQAIPAVLTGKDV------MAAAQTGTGKTAGFTLPLLELLAKGHKAKSGQTRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +   +   ++ G +P   +   L         +++ T  
Sbjct: 77  LVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRH----GVDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 133 RLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKK-------ILALLPAKRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +++    + + +K+  +   I+++    
Sbjct: 186 ATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQLIKQENWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R          S A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+     ++  +  +     +H++ GR GR       + L    
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGATGQAVSLVSSE 350


>gi|225174307|ref|ZP_03728306.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
 gi|225170092|gb|EEG78887.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
          Length = 424

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/353 (21%), Positives = 131/353 (37%), Gaps = 22/353 (6%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT  Q  AI  +L           + Q   G+GKTL  L+ +   V+      QA+I+ P
Sbjct: 26  PTPVQTQAIPALLSGKD------IVAQAQTGTGKTLAFLLPILEKVKVDKPFIQALIITP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q    + K           + G      + K L     G  HI++GT     D 
Sbjct: 80  TRELALQITAELNKLASTVGANSLAVYGGQDVERQIKKL----KGAIHIVVGTPGRILDH 135

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++   +    V         Q L +        ++  T+ P  +T++ ++     I  + 
Sbjct: 136 MRRGTISFSGVQMLVLDEADQMLHMGFLPEVDQIIGQTS-PKRQTMLFSATMPGSIRNLA 194

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---NFRSVVER 506
           ++   + P+   I       + I +L V  ++  K   +   I++ +      F     R
Sbjct: 195 KRYM-KTPVDIKIESKKVTLDEISQLVVSTTDRAKQDTLFKLIDQYRPFLALIFCRTKRR 253

Query: 507 FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
              L++       S   +HG +S   +E VM  F+    +LL+AT V   G+DV   + +
Sbjct: 254 AAKLNQALLEHGYSADELHGDLSQAKREQVMKRFRQAHIQLLVATDVAARGLDVEGITHV 313

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
              +      + +H++ GR GR  E    + L  P  S         L  + D
Sbjct: 314 FNYDIPQDLESYIHRI-GRTGRAGEKGLALTLVAPKDSPMLQAIEKGLGYSID 365


>gi|152992584|ref|YP_001358305.1| DEAD-box ATP dependent DNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424445|dbj|BAF71948.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp.
           NBC37-1]
          Length = 492

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 134/343 (39%), Gaps = 37/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA--VIMAP 329
            P+  Q+ AI  +L+          I Q   G+GKT    + + + ++A G    +++ P
Sbjct: 23  EPSPVQKDAIPLVLEGHD------MIAQAQTGTGKTAAFGLPIMSMMKADGSVEGLVIVP 76

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  + + ++ + + +    + G      + + ++     QA I++ T    QD 
Sbjct: 77  TRELAMQVSDELFRFGKLSGLKTATVYGGTAYGKQIERIK-----QASIVVATPGRLQDL 131

Query: 389 ------SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                  +  + ++L   DE    G    +K                   +TL+ ++   
Sbjct: 132 LMSGKIKLNPHFVVLDEADEMLDMGFLDEIKNIFTFLPKE---------RQTLMFSATMP 182

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---KESN 499
             I K+ E+     P    I      +  I +   V+ E ++   +   I+ K   K   
Sbjct: 183 NGIRKLAEQILN-NPKTVSITKSESTNSKITQYYYVVQERERDDALVRLIDYKNPEKCII 241

Query: 500 FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F  + +  + L  H T+    ++ +HG M    +E  + +FK G   + +AT V   G+D
Sbjct: 242 FCRMKKEVDRLVAHLTAQGFKVSGLHGDMEQKQREVTIRAFKQGGIDIFVATDVAARGLD 301

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V D + +   +      + +H++ GR GR  +    I L  P 
Sbjct: 302 VNDVTHVFNYHIPFDSESYVHRI-GRTGRAGKTGEAITLVSPN 343


>gi|167837800|ref|ZP_02464683.1| ATP-dependent DNA helicase RecG [Burkholderia thailandensis MSMB43]
          Length = 272

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 104/244 (42%), Gaps = 18/244 (7%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+    I    G +   + 
Sbjct: 35  KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGEIAQTEGVVFD-NE 87

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       ++ +   G+++ V G ++     + +VH
Sbjct: 88  IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVRQM-AVGQRLRVRGDVRGGFFGLEIVH 146

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 147 PTVKVVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEVARTYLQP 205

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +    
Sbjct: 206 LDVPPLADAVRLLHHPGAGADEAALIDGTHPAWTRIKFDELLAQQLSLKRAHEERRTRAA 265

Query: 253 IPIN 256
             + 
Sbjct: 266 PAMP 269


>gi|187608185|ref|NP_001119895.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
 gi|169154730|emb|CAQ14635.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
          Length = 709

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 135/379 (35%), Gaps = 52/379 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------------- 318
           PT  Q+ AI  I      K +   +     GSGKT   L+ + + +              
Sbjct: 246 PTPVQKYAIPII------KTKRDLMACAQTGSGKTAAFLLPVLSQIYSEGPGEALQATKA 299

Query: 319 ----EAGGQA--------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
               E G           +++AP   LA Q Y+  +K+   +++   ++ G      + +
Sbjct: 300 STQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIR 359

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAP 421
            LER      H+++ T     D ++  K+ L      ++DE  R          ++    
Sbjct: 360 DLER----GCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQ 415

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
               M      +T++ ++    +I  +  +    + I   +  +    E I +  V + E
Sbjct: 416 DT--MPPKGSRQTMMFSATFPKEIQILA-RDFLEEYIFLAVGRVGSTSENITQKVVWVEE 472

Query: 482 GKKAYWICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             K  ++   +               +   +           +   IHG  S  D+E  +
Sbjct: 473 NDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEAL 532

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G C +++AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 533 HQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 591

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            Y+   S  +   L +L  
Sbjct: 592 FYNDKNSNITKDLLDILVE 610


>gi|256074311|ref|XP_002573469.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658649|emb|CAZ29701.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 879

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 131/376 (34%), Gaps = 43/376 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           SPT  Q       L        ++ I Q   GSGKT   L+      +A        G  
Sbjct: 99  SPTPIQCQGWPVAL----SGRDLVGIAQ--TGSGKTASFLLPAIVHAKAQPSLKRGDGPI 152

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   LAQQ  +  + +  +       + G   +  + +AL +       ++I T 
Sbjct: 153 VLILVPTRELAQQVEKVAEDFCYSAGFKSACLYGGASRTGQAEALGQS----PEVVIATP 208

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D          +   +++DE  R                  ++    P  +TL+ +
Sbjct: 209 GRLLDFLESRHTNMRRCTYLVLDEADRMLDMGFEPSI------RRVVSQVRPDRQTLMWS 262

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-- 496
           +    ++  + E          V       +  I +   +L+E +K   +   +      
Sbjct: 263 ATWPREVKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILNESEKFKRLLSLLNSFDNA 322

Query: 497 -----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   E    L +    + A +HG     +++  +D F+ G   +L+AT V 
Sbjct: 323 RVLVFTETKKRTDELCQKLQDKGFDATA-MHGDKHQKERDRALDMFREGHISVLVATDVA 381

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D   II  +        +H++ GR GR ++  +    +     + +   + VL
Sbjct: 382 SRGLDINDVRYIINYDYPSQTEDYIHRI-GRTGRSDKKGTAYTFFSAKQPRLARELIEVL 440

Query: 612 KNT-----EDGFLIAE 622
           K       ++ F IAE
Sbjct: 441 KEARQTIPDELFKIAE 456


>gi|256827018|ref|YP_003150977.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641]
 gi|256583161|gb|ACU94295.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641]
          Length = 551

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 123/363 (33%), Gaps = 37/363 (10%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----A 320
             + ++ PT  QE AI  +L           I     G+GKT    +     +       
Sbjct: 19  DLLGYTDPTPVQEQAIPAVLAGRDV------IAAAKTGTGKTAAFSLPTMDRLGHARHGQ 72

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G   +I+ P   LA Q     +   + +   V  + G +    +  +L R       ++I
Sbjct: 73  GPLLLIVTPTRELALQIESVCRTIAKRSGHRVTCVVGGVSYNPQIDSLRR----GTDVLI 128

Query: 381 GTHALFQDSI--------QYYKLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +        Q   L+L   D     G     R  +    T    LL +AT 
Sbjct: 129 ATPGRLIDLMNQDAAHLNQVETLVLDEADRMLDMGFLPDMRRIVAACPTQRQTLLFSATI 188

Query: 431 I--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
                  +   L +    +I  +      I+   IP++   +    + ++   G     +
Sbjct: 189 DSAIEDNMAHLLNNPVFVEIAHRGETADTIEQYRIPVDHRHKNDLLIALLNERGGTRIIV 248

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +   + ++  R               ++  IH   S   ++  +++ + G C +L+AT
Sbjct: 249 FARTRHRVDTCVRK--------LRKAGFAVEPIHSDRSQNQRKRAIEALEAGKCDILVAT 300

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V+  GID+ + + ++  +        +H++ GR GR  E    I    P          
Sbjct: 301 DVLARGIDIPNVNYVVNLDMPDQVEDYVHRI-GRTGRAGEAGCAISFVTPENKAILRDIQ 359

Query: 609 SVL 611
            ++
Sbjct: 360 KLI 362


>gi|238854499|ref|ZP_04644837.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3]
 gi|260664817|ref|ZP_05865668.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           SJ-7A-US]
 gi|282934107|ref|ZP_06339386.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|313472627|ref|ZP_07813116.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           jensenii 1153]
 gi|238832852|gb|EEQ25151.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3]
 gi|239529420|gb|EEQ68421.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           jensenii 1153]
 gi|260561300|gb|EEX27273.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301854|gb|EFA94119.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
          Length = 484

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 83/419 (19%), Positives = 154/419 (36%), Gaps = 49/419 (11%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE  I   L           I Q   G+GKT    + +   ++      QA+
Sbjct: 20  GFEEATPIQEKTIPLALAGKDV------IGQAQTGTGKTAAFGLPILQKIDNKEHFIQAL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E + +  ++ +  V+++ G    + + +AL++       I++GT   
Sbjct: 74  VIEPTRELAIQTQEELYRLGRDEKAKVQVVYGGADISRQIRALKQ----TPAILVGTPGR 129

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D ++   +        +L   DE    G  Q +           +L  A     TL+ 
Sbjct: 130 ILDHLKRKTVKLDKIKTVVLDEADEMLDMGFIQDI---------ESILDFAKNREHTLLF 180

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I +I EK   ++P    I       ++I++  V   E +K   +C  I+ +  
Sbjct: 181 SATMPKPILRIGEKFM-KEPEIVQIKSKELTADLIDQYFVRAKEAEKFDIMCRLIDVQAP 239

Query: 497 --ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L     +     A IHG +S   + SV+  FKNG   +L+AT V 
Sbjct: 240 DLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILVATDVA 299

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+   + +   +      + +H++ GR GR  +    +    P       T  ++ 
Sbjct: 300 ARGLDISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGKNGISVTFVTPNEIGYMRTIENLT 358

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           K          +D   + +   L I    +   L A    +        ++A  +L   
Sbjct: 359 KKKMSPLRPPTDDQALQGQ---LAIAHKQIEDLLKADLTKYT-------EEASELLDNY 407


>gi|194378748|dbj|BAG63539.1| unnamed protein product [Homo sapiens]
          Length = 657

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 146/379 (38%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I      K +   +     GSGKT   L+ + + +   G          
Sbjct: 198 PTPVQKHAIPII------KGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKE 251

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 252 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 310

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 311 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 367

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  +D+    
Sbjct: 368 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFL 426

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L ++ + G  +  +   +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 427 LDILGATGSDSLTLV-FVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 479

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 480 HQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 538

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 539 FFNEKNMNITKDLLDLLVE 557


>gi|225155423|ref|ZP_03723915.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae
           bacterium TAV2]
 gi|224803879|gb|EEG22110.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae
           bacterium TAV2]
          Length = 536

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 129/371 (34%), Gaps = 47/371 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMA 328
            PT  Q  A+  +L                 G+GKT    + +   + A  +    +++ 
Sbjct: 155 EPTPIQAQAVPAVLAGRDVTG------SAQTGTGKTAAFALPILHKLGAHERRLRCLVLE 208

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E  +KY++ T +   ++ G +    +R+ L+R       ++  T     D
Sbjct: 209 PTRELALQVEEAFQKYSKYTDLTATVVYGGVGYGKQREDLQR----GVDVVAATPGRLLD 264

Query: 389 SIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            I+           L+L  VD     G     +  + Q   A   L  +AT  P    L 
Sbjct: 265 HIEQGTMTLADVEILVLDEVDRMLDMGFLPDVKRIVQQCPQARQTLFFSATLPPELAQLA 324

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D            P++  I       E I      +   +K   +   +   +  
Sbjct: 325 SWALRD------------PVEIKIGQRRSPAETISHAFYPVVASQKFDLLIDLLSRTEFK 372

Query: 499 ------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +   +R     +    ++ +IH   +  ++   ++ FK+G  ++L+AT +  
Sbjct: 373 SVIIFTRTKMGADRIAHRLQREGHTVGVIHSDRNQRERVEALEGFKSGKFEVLVATDIAA 432

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL- 611
            G+D+   S +I  +        +H++ GR GR         L      +++ +    + 
Sbjct: 433 RGLDIAGVSHVINYDVPENPEDYVHRI-GRTGRANASGDAFTLVTEDDVRDARSIERYIN 491

Query: 612 ----KNTEDGF 618
               +   DGF
Sbjct: 492 AEIERKKIDGF 502


>gi|167921338|ref|ZP_02508429.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei BCC215]
          Length = 465

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 170/461 (36%), Gaps = 62/461 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 23  LAQLGYTDMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARRFD 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    + V  + G  P   + ++LE      AHII+
Sbjct: 77  VQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIIV 132

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 133 GTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQ------CPPTRQTL 186

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   +   
Sbjct: 187 LFSATYPDGIAKLSQQFLRHP--KRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHY 244

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +       +  +HG +   +++ V+  F N +C +L+AT 
Sbjct: 245 RPVSTIAFCNTKQQCRDLLDVLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 305 VAARGLDIAQLEAVINVDVTPDPEVYVHRI-GRTGRADQDGWALSLASMNEMGRVGGIEQ 363

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILGIKQSGMPKFLIAQP 649
            L    +   +A              E L+           G++LG   +G   F  AQ 
Sbjct: 364 ALAREVEWHPLAELKAGGDAPLLPPMETLQILGGRKDKIRPGDVLGAL-TGDAGFSGAQI 422

Query: 650 -----ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                    + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 423 GKINVTEFSTYVAVERGIARDALRKL-NAGKIKGKRVKVRL 462


>gi|116191655|ref|XP_001221640.1| hypothetical protein CHGG_05545 [Chaetomium globosum CBS 148.51]
 gi|118575171|sp|Q2H720|DBP2_CHAGB RecName: Full=ATP-dependent RNA helicase DBP2
 gi|88181458|gb|EAQ88926.1| hypothetical protein CHGG_05545 [Chaetomium globosum CBS 148.51]
          Length = 562

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 154/435 (35%), Gaps = 55/435 (12%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRN--- 268
           P+  K F    P     +  E+                   +P  VE        R    
Sbjct: 94  PKFEKSFYQEHPNVAARSQAEVDKF----RRDHAMTVAGNNVPSPVETFDEAGFPRYVMD 149

Query: 269 ------IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-- 320
                  P +PT  Q       L           +   + GSGKTL   +     + A  
Sbjct: 150 EVKAQGFP-APTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQP 202

Query: 321 ------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                 G   +++AP   LA Q  + I K+ ++++I    + G +P+  + + L R    
Sbjct: 203 LLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGPQTRDLSR---- 258

Query: 375 QAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVL 424
              + I T     D ++  +        L+L   D     G   Q R  + Q        
Sbjct: 259 GVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTC 318

Query: 425 LMTATPIPRTLVLTSLGDIDISKI----TEKPAGR--KPIKTVIIPINRIDEVIERLKVV 478
           + +AT       L S    D  ++     +  A      +  V+    + D++I+ L+ +
Sbjct: 319 MWSATWPKEVRALASDFLTDFIQVNIGSMDLAANHRITQVVEVVNESEKRDKMIKHLEKI 378

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           + + +    I      K     R   E    L +    +++I HG     +++ V+D FK
Sbjct: 379 MEDKESQNKILIFTGTK-----RVADEITRFLRQDGWPALSI-HGDKQQNERDWVLDQFK 432

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +++AT V   GIDV + + ++  +  +     +H++ GR GR     + I  +  
Sbjct: 433 TGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRI-GRTGRAGAKGTAITFFTT 491

Query: 599 PLSKNSYTRLSVLKN 613
             SK +   + VL+ 
Sbjct: 492 DNSKQARDLVGVLQE 506


>gi|195144578|ref|XP_002013273.1| GL23489 [Drosophila persimilis]
 gi|194102216|gb|EDW24259.1| GL23489 [Drosophila persimilis]
          Length = 649

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 133/378 (35%), Gaps = 41/378 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       +           +     GSGKTL  ++     +          G  
Sbjct: 227 EPTPIQAQGWPIAMSG------ANFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPI 280

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  ++ +    + G  P+  + + L+R       I+I T 
Sbjct: 281 ALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE----IVIATP 336

Query: 384 ALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D +        +   +++DE  R          +K  +         P  +TL+ +
Sbjct: 337 GRLIDFLSSGGTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR------PDRQTLMWS 390

Query: 439 SLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    ++ ++ E   G      +    +   + I +V+E       E K    +    + 
Sbjct: 391 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKEEKLKSLLSDIYDT 450

Query: 495 KKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           +  V+        F      IHG  S  +++ V+  F++G   +L+A
Sbjct: 451 SENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 510

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV     +I  +        +H++ GR GR     +    +    +K +   
Sbjct: 511 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRI-GRTGRSNTKGTSFAFFTKNNAKQAKAL 569

Query: 608 LSVLKNTEDGFLIAEEDL 625
           + VL+        A E+L
Sbjct: 570 VDVLREANQEINPALENL 587


>gi|148559195|ref|YP_001258911.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|148370452|gb|ABQ60431.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
          Length = 482

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 79/365 (21%), Positives = 138/365 (37%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE------RKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  + ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGIDHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTL 435
             D  +  KL+L  V     DE  R      +   ++           L  +AT  P   
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEIT 193

Query: 436 VLTSLGDIDISKI-------TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            LT        +I       T K   ++ +K+     ++   + + ++      K A   
Sbjct: 194 KLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEGDSLKNAIIF 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         + V E F SL  H       +HG M    + +++ SFK+G  +LL+A+
Sbjct: 254 CNR--------KKDVSELFRSLTRH-EFDAGALHGDMDQRARMAMLSSFKDGKLRLLVAS 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S +   +        +H++ GR GR         +     +K      
Sbjct: 305 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 609 SVLKN 613
           S++  
Sbjct: 364 SMIGE 368


>gi|124481673|gb|AAI33163.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
          Length = 709

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 135/379 (35%), Gaps = 52/379 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------------- 318
           PT  Q+ AI  I      K +   +     GSGKT   L+ + + +              
Sbjct: 246 PTPVQKYAIPII------KTKRDLMACAQTGSGKTAAFLLPVLSQIYSEGPGEALQATKA 299

Query: 319 ----EAGGQA--------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
               E G           +++AP   LA Q Y+  +K+   +++   ++ G      + +
Sbjct: 300 STQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIR 359

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAP 421
            LER      H+++ T     D ++  K+ L      ++DE  R          ++    
Sbjct: 360 DLER----GCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQ 415

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
               M      +T++ ++    +I  +  +    + I   +  +    E I +  V + E
Sbjct: 416 DT--MPPKGSRQTMMFSATFPKEIQILA-RDFLEEYIFLAVGRVGSTSENITQKVVWVEE 472

Query: 482 GKKAYWICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             K  ++   +               +   +           +   IHG  S  D+E  +
Sbjct: 473 NDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEAL 532

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G C +++AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 533 HQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 591

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            Y+   S  +   L +L  
Sbjct: 592 FYNDKNSNITKDLLDILVE 610


>gi|332297229|ref|YP_004439151.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
 gi|332180332|gb|AEE16020.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
          Length = 632

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 127/354 (35%), Gaps = 21/354 (5%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  Q  AI  +L   +       I +   G+GKT    + +   +       +A+I+AP
Sbjct: 28  PSPIQVLAIPRLLGGEAN-----VIAKARTGTGKTAAFGLPLVQTIREDKGHVRALILAP 82

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I   T  T   +  + G      + +AL+R       I++GT    QD 
Sbjct: 83  TRELALQVCKEIDSLTTGTYPRLAAVYGGQSMGEQLRALKR----GVEIVVGTPGRVQDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   L L  +D          +           +   A P  R L+ ++     I KI 
Sbjct: 139 IERKSLDLSQID-YFILDEADEMLDMGFIDDIEAIFAKANPESRILLFSATMPQPILKIA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------NFRSV 503
            +  G   I            + E+   ++ E  K   +   I+   +         ++ 
Sbjct: 198 SRFMGDYEIVEEETSPEE-PVLTEQKYWIVRESDKIEALVRLIDISPDFYGLVFTQTKAD 256

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +      +      A +HG +    +E ++  F+N   ++L+AT V   GID+   + +
Sbjct: 257 ADMITRQLDERGYEAAALHGDIPQAQREKILYRFRNKKTRILVATDVAARGIDIEGLTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
           +       G   +H++ GR GR         L  P   +      + ++ +  G
Sbjct: 317 VNYALPFDGPTYVHRI-GRTGRAGAKGLAFTLVRPEERRKLEYLKAAVRKSAKG 369


>gi|84998580|ref|XP_954011.1| eukaryotic translation initiation factor [Theileria annulata]
 gi|65305009|emb|CAI73334.1| eukaryotic translation initiation factor, putative [Theileria
           annulata]
          Length = 394

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 128/345 (37%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ AIK IL+          I+Q   G+GKT V  +     V +     Q ++++
Sbjct: 43  KPSAVQQRAIKPILEGRDV------IIQSQSGTGKTCVFCLGALQTVNSNVRETQVLLLS 96

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q  +          + V    G    +   KALE        I+ GT      
Sbjct: 97  PTRELAEQSQKVCLALGDYCNVEVHCCIGGKKVSDDIKALES----GVQIVSGTPGRVNH 152

Query: 389 SI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I           +LIL   DE    G ++++    +            P  + +++++ 
Sbjct: 153 MITDRHLNTRNIKQLILDEADEMLNRGFKEQVYSVYRYLP---------PTIQVVLVSAT 203

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
              D+ +IT K         V      ++ + +    V  E  K   +C   E       
Sbjct: 204 LPHDVIEITNKFMNNPFKVLVKRDELTLEGIKQFFISVEKEQWKFDTLCDLYESLIITQA 263

Query: 497 --ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +  V+      +     ++ +HG MS  ++  +M  F+ G  ++LI+T +   G
Sbjct: 264 VIFCNTKEKVDWLAKKMKDANFEVSKMHGEMSQKERNDIMQRFRKGESRVLISTDLWGRG 323

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +DV   S+++  +  +   + +H++ GR GR       I      
Sbjct: 324 LDVQQVSLVVNYDLPNSRESYIHRI-GRSGRYGRKGVAINFVKDD 367


>gi|313157396|gb|EFR56819.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
          Length = 473

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 128/347 (36%), Gaps = 37/347 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  QE AI   L+          +     G+GKT    + +   + A  +        
Sbjct: 23  TPTPIQEQAIPPALEGRD------LMGCAQTGTGKTAAFTLPILQLLSARPRTKGRRPIK 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA Q  E  + Y + T +   +I G + Q  +  AL+R       +++ T 
Sbjct: 77  ALVLTPTRELAIQIDECCRDYARYTDLRHCVIFGGVNQRPQVDALQR----GVDLLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D      +    +   ++DE  R      +   +       +L       +TL  +
Sbjct: 133 GRLLDLIGQGYVSLSDIRFFVLDEADRMLDMGFIHDIK------RILPLLPKERQTLFFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +    DI  +        P+   + P   + E I +  +   + +K   +   + E+ E 
Sbjct: 187 ATMPSDIVTLANS-MLHDPVHVTVTPPASVVETISQSVMFAEKAEKKDLLISLLRERSEG 245

Query: 498 -----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                S  +   +R   +          IHG  S   +E  M+ F+ G C++LIAT +  
Sbjct: 246 SVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMNDFRAGRCRVLIATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            GID+ +  ++I  +        +H++ GR GR     + I      
Sbjct: 306 RGIDISELPLVINYDLPEVAETYVHRI-GRTGRAGHDGTAIAFCSED 351


>gi|288958478|ref|YP_003448819.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
 gi|288910786|dbj|BAI72275.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
          Length = 521

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 138/373 (36%), Gaps = 40/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  QE AI  +LQ      R   +     G+GKT    + M + + +G       +++
Sbjct: 23  QPTPIQEQAIPCVLQ------RRDVLGCAQTGTGKTASFTLPMISILASGRARARMPRSL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  + Y +  ++ + ++ G      + K L+R       ++I T   
Sbjct: 77  ILEPTRELAAQVAESFEVYGKYHKLSMALLIGGETFTEQVKKLDR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D  +   ++L  +     DE  R      +   +       ++       +TL  ++ 
Sbjct: 133 LIDLFERGNIMLNDIKVFVIDEADRMLDMGFIPDIE------RIVSKLPKNRQTLFFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
              +I ++ +      P++  + P     E + +   ++ E  K   +   ++ +     
Sbjct: 187 MPPEIRRLADAFLT-DPMEITVAPPASPAETVTQALALVHEMDKRRALRHLLQTEDVKNA 245

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +  +       E    ++  +HG M    +   ++ FK G   LL+ + V   G
Sbjct: 246 FIFCNRKRDIAVLQKSLERHGFNVGALHGDMVQSKRTETLERFKQGEITLLVCSDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN- 613
           IDV   S +   +        +H++ GR GR  +     +L  P  +K       ++K  
Sbjct: 306 IDVQGLSHVFNFDVPLTPDDYVHRI-GRTGRAGKQGRAFMLATPDDTKLVGAITRLIKRE 364

Query: 614 ----TEDGFLIAE 622
                 DG   AE
Sbjct: 365 IPMIAIDGLETAE 377


>gi|74006736|ref|XP_861449.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 8 [Canis familiaris]
          Length = 663

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 430

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 431 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 544 FFNERNINITKDLLDLLVE 562


>gi|2558533|emb|CAA73349.1| putative RNA helicase (DEAD box) [Danio rerio]
          Length = 688

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 134/378 (35%), Gaps = 51/378 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA------------MAAAVEA 320
           PT  Q+ AI  I      K++   +     GSGKT   L+                A + 
Sbjct: 231 PTPVQKHAIPII------KSKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGEALQAAKN 284

Query: 321 GGQ-------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             Q             ++++AP   LA Q Y+  +K++  + +   ++ G      + + 
Sbjct: 285 SAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGADIGQQIRD 344

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPH 422
           LER      H+++ T     D ++  K+ L      ++DE  R          ++     
Sbjct: 345 LER----GCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQD 400

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
              M    + +T++ ++    +I  +  +      I   +  +    E I +  V + E 
Sbjct: 401 T--MPPKGLRQTMMFSATFPKEIQILA-RDFLEDYIFLAVGRVGSTSENITQKVVWVEEN 457

Query: 483 KKAYWICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            K  ++   +               +   +           +   IHG  S  D+E  + 
Sbjct: 458 DKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALH 517

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G C +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      
Sbjct: 518 QFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATSF 576

Query: 596 YHPPLSKNSYTRLSVLKN 613
           ++      +   L +L  
Sbjct: 577 FNDKNGNITKDLLDILVE 594


>gi|288935786|ref|YP_003439845.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|290509812|ref|ZP_06549183.1| ATP-independent RNA helicase DbpA [Klebsiella sp. 1_1_55]
 gi|288890495|gb|ADC58813.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
 gi|289779206|gb|EFD87203.1| ATP-independent RNA helicase DbpA [Klebsiella sp. 1_1_55]
          Length = 457

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 81/453 (17%), Positives = 173/453 (38%), Gaps = 48/453 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + S T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LNELGYLSMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQHIDPARFE 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +    I + ++ G  P   +R +L+       HII+
Sbjct: 72  TQSLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  + +        R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-QTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P    I  ++ +   IE+    +S   K   +   + + +    
Sbjct: 187 WPAAIAAISGR-VQRNPQTIEIDTVDALP-AIEQQFFEVSRHGKIALLQRLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+   ++++           +H++ GR  R  E    I    P  ++ +     +L+ +
Sbjct: 305 LDIKSLALVVNFELAWDPEVHVHRI-GRTARAGEQGLAISFCAPEEAQRATILADMLQLS 363

Query: 615 ED------GFLIAEEDLKQ------------RKEGEILG--IKQSGMPKFLIAQPELHDS 654
            +      G  IA    +              + G++LG      G     I +  +H +
Sbjct: 364 LNWLPAPTGNTIAPLTAEMATLCIDGGKKAKMRPGDVLGALTGDMGFDGADIGKITVHPA 423

Query: 655 --LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
              + I +  A+    Q  +   ++G++ R+ L
Sbjct: 424 HVYVAIRQNMAQKAYKQLQN-GKIKGKACRVRL 455


>gi|223997764|ref|XP_002288555.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975663|gb|EED93991.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 369

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 137/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AI+ I+           I Q   G+GKT V  I+    ++      Q +I++
Sbjct: 18  KPSAIQQRAIRPIVCGRDV------IAQSQSGTGKTAVFSISSLQLLDERSNDPQVLILS 71

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q    +        +      G       RK L++       ++ GT     D
Sbjct: 72  PTRELAEQTQRVVSSLGDFMNVKCHACIGGKSLGEDRKVLQQ----GVQVLSGTPGRVYD 127

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I+   L        I+   DE    G ++++    +       V+L++AT     L +T
Sbjct: 128 LIKRGDLTTRALKAFIIDEADEMLNKGFKEQIYDIYRYLPPQTQVVLVSATLPVEVLEMT 187

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
                D  +I  K      + IK   + + + +   + L  +       +A   C     
Sbjct: 188 RKFMNDPIRILVKRDELTLEGIKQFFVSVEKEEWKFDTLCDLYDTLTVTQAVIFCNT--- 244

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+   +       ++A +HG M+  +++ VM+ F++G+ ++LIAT +   G
Sbjct: 245 ------KQKVDWLATKMRESNFTVAAMHGDMTQDERDKVMEDFRSGSSRVLIATDLWGRG 298

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV   S++I  +        +H++ GR GR       I        +            
Sbjct: 299 IDVQQVSLVICYDLPTNRELYIHRI-GRSGRFGRKGVAINFVRTEDVRTLRDIEQFYSTQ 357

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 358 IDEMPLNVSDL 368


>gi|163843207|ref|YP_001627611.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
 gi|163673930|gb|ABY38041.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
          Length = 482

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 138/365 (37%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE------RKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTL 435
             D  +  KL+L  V     DE  R      +   ++           L  +AT  P   
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEIT 193

Query: 436 VLTSLGDIDISKI-------TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            LT        +I       T K   ++ +K+     ++   + + ++      K A   
Sbjct: 194 KLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEGDSLKNAIIF 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         + V E F SL  H       +HG M    + +++ SFK+G  +LL+A+
Sbjct: 254 CNR--------KKDVSELFRSLTRH-EFDAGALHGDMDQRARMAMLSSFKDGKLRLLVAS 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S +   +        +H++ GR GR         +     +K      
Sbjct: 305 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 609 SVLKN 613
           S++  
Sbjct: 364 SMIGE 368


>gi|47086809|ref|NP_997777.1| probable ATP-dependent RNA helicase DDX5 [Danio rerio]
 gi|37362204|gb|AAQ91230.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Danio rerio]
          Length = 518

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 168/440 (38%), Gaps = 47/440 (10%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKI 261
             + +N+   P+  K+F   +P   R +  E+   + +  +  K       I    E   
Sbjct: 44  RKKHWNLDELPKFEKNFYQENPDVARRSAQEVEHYRRSKEITVKGRDGPKPIVKFHEANF 103

Query: 262 AQKILRNI----PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            + ++  I       PT  Q       L        M+ I Q   GSGKTL  L+     
Sbjct: 104 PKYVMDVITKQNWTDPTPIQAQGWPVAL----SGKDMVGIAQ--TGSGKTLSYLLPAIVH 157

Query: 318 VE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +          G   +++AP   LAQQ  +   +Y + ++I    I G  PQ  + + LE
Sbjct: 158 INHQPFLEHGDGPICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPQGPQIRDLE 217

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKAT 419
           R       I I T     D ++  K        L+L   D     G + +++    Q   
Sbjct: 218 R----GVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 273

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRKPIKTVII--PINRIDEVIE 473
               L+ +AT       L      +  +I     +  A    ++ V +     + D++I 
Sbjct: 274 DRQTLMWSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIR 333

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L+ ++SE +    I  + +       R   +    +      ++ I HG  +  +++ V
Sbjct: 334 LLEEIMSEKENKTIIFVETK-------RRCDDLTRRMRRDGWPAMGI-HGDKNQQERDWV 385

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           ++ FK G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R ++  +  
Sbjct: 386 LNEFKYGKAPILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRI-GRTARSQKTGTAY 444

Query: 594 LLYHPPLSKNSYTRLSVLKN 613
             + P   K ++  +SVL+ 
Sbjct: 445 TFFTPNNMKQAHDLVSVLRE 464


>gi|83652036|gb|ABC36100.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
          Length = 562

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 82/460 (17%), Positives = 169/460 (36%), Gaps = 60/460 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 120 LAQLGYTVMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARRFD 173

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    + V  + G  P   + ++LE      AHII+
Sbjct: 174 VQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIIV 229

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 230 GTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVAR------LCPPTRQTL 283

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   ++  
Sbjct: 284 LFSATYPDGIAKLSQQFLRNP--KEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLKHY 341

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 342 RPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATD 401

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 402 VAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQEGWALSLASMDEMGRVGAIEQ 460

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILG--IKQSGMPKFLIA 647
            L    +   +A              E L+           G++LG     +G     I 
Sbjct: 461 ALGRDVEWHPLAELKADGNEPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGSQIG 520

Query: 648 QP--ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +       + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 521 KINVTEFSTYVALERGIARDALRKL-NAGKIKGKRVKVRL 559


>gi|71033289|ref|XP_766286.1| eukaryotic translation initiation factor 4A [Theileria parva strain
           Muguga]
 gi|68353243|gb|EAN34003.1| eukaryotic translation initiation factor 4A, putative [Theileria
           parva]
          Length = 394

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 127/345 (36%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ AIK IL+          I+Q   G+GKT V  +     V +     Q ++++
Sbjct: 43  KPSAVQQRAIKPILEGRDV------IIQSQSGTGKTCVFCLGALQTVNSNVRETQVLLLS 96

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q  +          I V    G    +   KALE        I+ GT      
Sbjct: 97  PTRELAEQSQKVCLALGDYCNIEVHCCIGGKKVSDDIKALES----GVQIVSGTPGRVNH 152

Query: 389 SI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I           +LIL   DE    G ++++    +            P  + +++++ 
Sbjct: 153 MITDRHLNTRNIKQLILDEADEMLNRGFKEQVYSVYRYLP---------PTIQVVLVSAT 203

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
              D+ +IT K         V      ++ + +    V  E  K   +C   E       
Sbjct: 204 LPHDVIEITNKFMNNPFKVLVKRDELTLEGIKQFFISVEKEQWKFDTLCDLYESLIITQA 263

Query: 497 --ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +  V+      +     +  +HG MS  ++  +M  F+ G  ++LI+T +   G
Sbjct: 264 VIFCNTKEKVDWLAKKMKDGNFEVCKMHGEMSQKERNDIMQRFRKGESRVLISTDLWGRG 323

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +DV   S+++  +  +   + +H++ GR GR       I      
Sbjct: 324 LDVQQVSLVVNYDLPNSRESYIHRI-GRSGRYGRKGVAINFVKDD 367


>gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
 gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
          Length = 522

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 132/346 (38%), Gaps = 35/346 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAV 325
            F   T  Q   I   L           I Q   G+GKT    + M   ++   +  Q +
Sbjct: 20  GFEEATPIQSETIPLALSGRDV------IGQAQTGTGKTAAFGLPMLEKIDTSSSHLQGL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +++P   LA Q  E + +  ++ ++ V  + G      + + L+     + HI++GT   
Sbjct: 74  VISPTRELAIQTQEELYRLGKDKKVRVMAVYGGADIGRQIRQLKD----RPHIVVGTPGR 129

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--R 433
             D I  + L L  V        DE    G  + +   +++  +    LL +AT  P  +
Sbjct: 130 MLDHINRHTLKLETVETLVLDEADEMLNMGFLEDIESIISKVPSTRQTLLFSATMPPAIK 189

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           ++ +  + + +  KI  K      I    +     ++     +++  +  +   I  +  
Sbjct: 190 SIGVKFMQNPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPELTIIFGRT- 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+      E        IHG +S   + SV+ SFKNG   +L+AT V   
Sbjct: 249 -------KRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAAR 301

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKGGMSVTFVTPN 346


>gi|260460697|ref|ZP_05808947.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259033274|gb|EEW34535.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 525

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 138/365 (37%), Gaps = 47/365 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI   L           +     G+GKT   ++ M   +E G       + +
Sbjct: 23  QPTPIQAGAIPHALLGKDV------LGIAQTGTGKTASFVLPMLTRLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY +N ++ + ++ G +    + K LER     A ++I T   
Sbjct: 77  ILEPTRELAAQVEENFIKYGKNHKLNIALLIGGVSFDEQDKKLER----GADVLIATPGR 132

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D  +  KL+L  V+        + L +        +  M      +TL  ++    +I
Sbjct: 133 LLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMI-PFTRQTLFFSATMPPEI 191

Query: 446 SKITEKPAGRKPIKTVII-------------------PINRIDEVIERLKVVLSEGKKAY 486
           +K+TEK     P++  +                    P ++ + +   +K   +E K A 
Sbjct: 192 TKLTEKFL-HAPVRVEVSKAASAATNIIQRLVKSGSKPWDKRETLRNLIKAEDAELKNAI 250

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C +  E        V E F SL ++       +HG M    +  ++ +F++G  + L+
Sbjct: 251 IFCNRKVE--------VSELFRSLLKY-DFDAGALHGDMDQRARMQMLANFRDGKLRYLV 301

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           A+ V   G+D+ D S +   +        +H++ GR GR         +     +K    
Sbjct: 302 ASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRI-GRTGRAGRSGKSFTIATKSDTKYIDA 360

Query: 607 RLSVL 611
              ++
Sbjct: 361 IERLI 365


>gi|224135925|ref|XP_002322195.1| predicted protein [Populus trichocarpa]
 gi|222869191|gb|EEF06322.1| predicted protein [Populus trichocarpa]
          Length = 450

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 153/429 (35%), Gaps = 49/429 (11%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI------- 265
              K+  + +P+   ++  E++         R+   +   +P  +               
Sbjct: 27  PFEKNLYFENPSIRAMSEHEVVTF----RARREITVEGHDVPRPIRIFHEANFPDYCLQV 82

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           +  + F  PT  Q       L+          I   + GSGKTL  L+     V A    
Sbjct: 83  IAKLGFVEPTPIQAQGWPMALKGRD------LIGIAETGSGKTLAYLLPAFVHVAAQPRL 136

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G   +++AP   LA Q  E   K+     I    I G  P+  + + L+R      
Sbjct: 137 VHGDGPIVLVLAPTRELAVQIQEEALKFGSKANIRSTCIYGGAPKGPQIRDLQR----GV 192

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLM 426
            I+I T     D      +   ++  +++DE  R        Q R  ++Q       L  
Sbjct: 193 EIVIATPGRLIDMLGAQHVNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYW 252

Query: 427 TATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +AT       L    L +     I  +          ++ +    E  +RL  +L E   
Sbjct: 253 SATWPREVEALARHFLHNPYKVIIGSQDLKANQSIKQVVEVMMDLEKYKRLIKLLKEVMD 312

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              I   +E KK  +     +    L     ++++I HG  +  +++ V+  FK+G   +
Sbjct: 313 GSRILIFMETKKGCD-----QVTRQLRMDGWAALSI-HGDKNQAERDWVLAEFKSGRSPI 366

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           + AT V   G+DV D   ++  +        +H++ GR GR     + +  +    +K +
Sbjct: 367 MTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRI-GRTGRAGARGTALTFFTESNAKFA 425

Query: 605 YTRLSVLKN 613
              + +L+ 
Sbjct: 426 RDLIKILQE 434


>gi|255654878|ref|ZP_05400287.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-23m63]
 gi|296449624|ref|ZP_06891399.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP08]
 gi|296878056|ref|ZP_06902072.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP07]
 gi|296261522|gb|EFH08342.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP08]
 gi|296430956|gb|EFH16787.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP07]
          Length = 375

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 127/357 (35%), Gaps = 34/357 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  Q+ +IK I +          I +   G+GKTL  L+ +   +       Q +I++
Sbjct: 29  TPTPIQKESIKLIKEGKDV------IAEAQTGTGKTLAFLLPIFENISLDINDIQVLILS 82

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  ++  + +    G      + K L     G  H+II T     D
Sbjct: 83  PTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIKKL----KGNIHMIIATPGRLLD 138

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--LV 436
            +    +        +L   D+    G +  +   L + +     L  +AT   +   L 
Sbjct: 139 HLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNKKQTLCFSATINSQVKKLA 198

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                +  +  I ++      IK  ++      ++    KV+  +      I  +     
Sbjct: 199 YRYTKNPVVVSIQKEEITLNNIKQEVVETTDRKKLDALCKVLDEDNPFMAIIFCRT---- 254

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+           +   +H  ++   +E +M SF+N   + LIAT V   G+D
Sbjct: 255 ----KRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLIATDVASRGLD 310

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           +   S I   +        +H++ GR GR  E         P   +      + +++
Sbjct: 311 ISGVSHIYNYDLPETPEDYIHRI-GRTGRAGEEGYTCAFIDPKNERMLSEIETAIES 366


>gi|328786029|ref|XP_001122722.2| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Apis
           mellifera]
          Length = 1030

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 138/370 (37%), Gaps = 42/370 (11%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           +L+ + +  PT  Q  AI  I+           I     GSGKTL  L+ M   +     
Sbjct: 382 VLKKLGYEKPTPIQCQAIPAIMSGRD------LIGIAKTGSGKTLAFLLPMFRHILDQPP 435

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  A+IM P   L  Q     KK+T++  +    + G    + +   L+R     
Sbjct: 436 LADGDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAELKR----G 491

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R                  ++  
Sbjct: 492 AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVM------RIMEN 545

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++     +  +  +    +P++  +   + + + +E+  VVL E +K Y 
Sbjct: 546 VRPDRQTVLFSATFPRQMEALARR-ILTRPVEVQVGGRSIVCKDVEQHVVVLEEDQKFYK 604

Query: 488 ICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +   +   ++        + +   +         + S   +HG +   D++S +  FK G
Sbjct: 605 LLEILGHYQDKGSAIIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAG 664

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             KLL+AT+V   G+DV    +++  +  +     +H+  GR GR               
Sbjct: 665 RTKLLVATSVAARGLDVKHLILVVNYDCPNHYEDYVHR-CGRTGRAGNKGYAYTFITSEQ 723

Query: 601 SKNSYTRLSV 610
            + +   L  
Sbjct: 724 ERYAGDILRA 733


>gi|168017610|ref|XP_001761340.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687346|gb|EDQ73729.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 589

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 128/375 (34%), Gaps = 45/375 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  AI   L           +     GSGKT      + A +          GG+
Sbjct: 163 KPTPVQRYAIPISLHGRD------LMACAQTGSGKTAAFCFPIIAGIMRNTPPGRSRGGR 216

Query: 324 -----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A+I++P   L+ Q  +  KK+   T I V +  G  P  ++ + +ER       I
Sbjct: 217 KALPLALILSPTRELSCQISDEAKKFAYQTGIKVVVCYGGAPVHNQLREMER----GVDI 272

Query: 379 IIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T     D ++  ++ L +V     DE  R          Q       + M      +
Sbjct: 273 LVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEP--QIRRIVEQMDMPPAGERQ 330

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    +I ++         I   +  +    E+I +    + +  K   +   I 
Sbjct: 331 TMLFSATFPREIQRLASDFLS-NYIFLAVGRVGSSTELIVQRVEYVQDSDKRSMLMDLIH 389

Query: 494 EKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +                  +   +               IHG  S  ++E  + SF+ G
Sbjct: 390 AQSALAPPGQQSLTLVFVETKKGADSLEDWLCRMGFPATTIHGDRSQQEREHALRSFRTG 449

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+D+   + ++  +        +H++ GR GR  +       ++   
Sbjct: 450 VTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRI-GRTGRAGKSGVATAFFNEKD 508

Query: 601 SKNSYTRLSVLKNTE 615
              + +   ++  + 
Sbjct: 509 QSLARSLAELMTESS 523


>gi|254974450|ref|ZP_05270922.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-66c26]
 gi|255091842|ref|ZP_05321320.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
           107932]
 gi|255099944|ref|ZP_05328921.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-63q42]
 gi|255305833|ref|ZP_05350005.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
           43255]
 gi|255313577|ref|ZP_05355160.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-76w55]
 gi|255516261|ref|ZP_05383937.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-97b34]
 gi|255649358|ref|ZP_05396260.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-37x79]
 gi|260682530|ref|YP_003213815.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260686129|ref|YP_003217262.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|260208693|emb|CBA61492.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260212145|emb|CBE02789.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 375

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 127/357 (35%), Gaps = 34/357 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  Q+ +IK I +          I +   G+GKTL  L+ +   +       Q +I++
Sbjct: 29  TPTPIQKESIKLIKEGKDV------IAEAQTGTGKTLAFLLPIFENISLDINDIQVLILS 82

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  ++  + +    G      + K L     G  H+II T     D
Sbjct: 83  PTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIKKL----KGNIHMIIATPGRLLD 138

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--LV 436
            +    +        +L   D+    G +  +   L + +     L  +AT   +   L 
Sbjct: 139 HLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNKKQTLCFSATINSQVKKLA 198

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                +  +  I ++      IK  ++      ++    KV+  +      I  +     
Sbjct: 199 YRYTKNPVVVSIQKEEITLNNIKQEVVETTDRKKLDALCKVLDEDNPFMAIIFCRT---- 254

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+           +   +H  ++   +E +M SF+N   + LIAT V   G+D
Sbjct: 255 ----KRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLIATDVASRGLD 310

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           +   S I   +        +H++ GR GR  E         P   +      + +++
Sbjct: 311 ISGVSHIYNYDLPETPEDYIHRI-GRTGRAGEEGYTCAFIDPKNERMLSEIETAIES 366


>gi|150016621|ref|YP_001308875.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903086|gb|ABR33919.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 369

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 138/370 (37%), Gaps = 37/370 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  Q+ +I  I            I +   G+GKTL  L+ +   + +     QA+I+ 
Sbjct: 23  DPTPIQKQSIPKIRDGKDV------IAEAATGTGKTLAFLLPLLENINSKSNEIQALILT 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q      K  +   I +  + G    A + K L    +   H+II T     D
Sbjct: 77  PTRELAIQITNEANKLKEFNDINILPVYGGKDIASQLKKL----NNNIHLIIATPGRLLD 132

Query: 389 SIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            ++       KL   I+DE  +        L         ++       + L  ++  D 
Sbjct: 133 HLERKTIDLSKLKTFILDEADQM------LLMGFKNEVESIISKMPRKKQLLCFSATIDS 186

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------ 497
            + K+  +   + PI+  I   +   + IE+  V  ++ KK   +C  ++E         
Sbjct: 187 SVKKLAYRYM-KDPIEVFIKQDDISLDAIEQDIVETTDRKKRDALCKVLDEDNPFMAIIF 245

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +  V+   ++      +   +H  +    +E +M SF+N   + LIAT V   G+D+
Sbjct: 246 CRTKRRVDELEAVLHTRKYNCEKLHSDIPQNKRERIMKSFRNAEIQYLIATDVAARGLDI 305

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              + I   +      + +H++ GR GR  E     +   P   K+       +     G
Sbjct: 306 NGITHIYNYDIPESVESYIHRI-GRTGRAGESGYTCMFIDPKNIKDVNEIEGAI-----G 359

Query: 618 FLIAEEDLKQ 627
           F I   +++ 
Sbjct: 360 FKIRRRNVEI 369


>gi|242399022|ref|YP_002994446.1| ATP-dependent RNA helicase, DEAD-family [Thermococcus sibiricus MM
           739]
 gi|242265415|gb|ACS90097.1| ATP-dependent RNA helicase, DEAD-family [Thermococcus sibiricus MM
           739]
          Length = 382

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 138/354 (38%), Gaps = 30/354 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            PT  Q+  I  +L+          I Q   G+GKT    + +   ++      QA+++ 
Sbjct: 23  KPTDIQKEVIPRLLRG-----DNDIIGQSQTGTGKTAAFALPLIELIDEEIKEVQAIVIT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I+      +I V  + G  P   + + L R      HI++GT     D
Sbjct: 78  PTRELAIQVADEIRSLRGKRRINVLPVYGGQPIGPQIRNLRR----GVHIVVGTPGRVID 133

Query: 389 SIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            I+   L L  V     DE  R      ++  +       +L   +   R L+ ++    
Sbjct: 134 HIERGTLSLDGVSYFILDEADRMLDMGFIEDIE------RILRHTSEEKRVLMFSATIPR 187

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-----S 498
           +I ++  +      +   I   +   E++E++   +   K+   +C  ++EK        
Sbjct: 188 EILRLARRYLKDYEV-IRIQDRSLAPELVEQIYFEVRPNKRFSLLCSILDEKDFYGIVFC 246

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +       S  +    S+  ++G +    +E +++ F+ G  ++L+AT V   GIDV 
Sbjct: 247 QTKRETRELASKLKTKGYSVEALNGDIPQKGRERILERFRKGKIRVLVATDVAARGIDVK 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           D + +I  +      A +H++ GR GR  +    I    P  S        V +
Sbjct: 307 DLTHVINYSIPQNPEAYVHRI-GRTGREGKRGKAITFVAPWESPKLRDIERVAR 359


>gi|163855229|ref|YP_001629527.1| putative ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
 gi|163258957|emb|CAP41256.1| putative ATP-dependent RNA helicase [Bordetella petrii]
          Length = 476

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 70/380 (18%), Positives = 142/380 (37%), Gaps = 40/380 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             +  ++ Q +      +PT  Q  A+  +   M+ ++ M        G+GKT    + +
Sbjct: 22  FGLHPQLLQSVADTGYTTPTPIQAQALPAV---MAGRDVMGA---AQTGTGKTAAFTLPI 75

Query: 315 AAAVEA-----------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
              +               + +I+ P   LA Q YE +K+Y+++T +   ++ G +    
Sbjct: 76  LHRLMPLANTSASPARHPVRTLILTPTRELADQVYESVKRYSKHTPLRSAVVFGGVDIGP 135

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKA 418
           +++AL R       I++ T     D ++   + L  V     DE  R      L      
Sbjct: 136 QKEALRRGCE----ILVATPGRLLDHVEQKTVNLSQVGILVLDEADRMLDMGFLPDL--- 188

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                ++       + L+ ++    +I K+       +P++  +   N   + + ++   
Sbjct: 189 ---DRIVRLLPAQRQGLLFSATFSNEIRKLGRTYLN-QPVEIEVAARNATADTVSQIAYQ 244

Query: 479 LSEGKKAYWICPQIEEK------KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           +    K   +   ++ +        SN +    R     E        IHG  S  D+  
Sbjct: 245 MPSDAKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARELERDGVRAESIHGDKSQADRMK 304

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            +D+FK G  ++L+AT V   G+DV     +I  +  H     +H++ GR GR       
Sbjct: 305 ALDAFKAGELEVLVATDVAARGLDVAGVPCVINYDLPHNAEDYVHRI-GRTGRAGASGEA 363

Query: 593 ILLYHPPLSKNSYTRLSVLK 612
           I L+    ++       + K
Sbjct: 364 IALFTADETRYLQDIEKLTK 383


>gi|168067875|ref|XP_001785829.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662518|gb|EDQ49361.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 538

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 82/409 (20%), Positives = 138/409 (33%), Gaps = 51/409 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q  A+   L           +   + GSGKT    + M     A        G  
Sbjct: 132 TPTPIQAQALPVALSGRD------LLGCAETGSGKTAAFSLPMIQHCLAQPPIRRGDGPL 185

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           A+++AP   LAQQ  + +K ++++       I+ G      +R  L         I++ T
Sbjct: 186 ALVLAPTRELAQQIEKEVKAFSRSAEGFKTSIVVGGTNIYEQRSELRA----GVEIVVAT 241

Query: 383 HALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP 432
              F D +Q           ++L   D     G   Q R  +         LL +AT   
Sbjct: 242 PGRFIDHLQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLPKKHQTLLFSATMPE 301

Query: 433 RTLVLTSLG-----DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV----LSEGK 483
               L          + + +++   A        I    +ID ++  L       L   +
Sbjct: 302 EIEALAQEYLNKPVRVKVGRVSSPTANVTQNLEKITEKEKIDSLLALLVDEHSQSLDSNQ 361

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
                   +E K   +     E  ++L E    + A+  GR S  ++E+ +  F+ GT  
Sbjct: 362 PPPLTIVFVERKARCD-----EVTDALVEQGLKATALHGGR-SQSEREAALRDFRKGTTN 415

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+DV   + +I  +        +H++ GR GR          Y       
Sbjct: 416 ILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRI-GRTGRAGASGRATSFYTERDVFL 474

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
                  +   E G  +AE           LG+ Q G     +     H
Sbjct: 475 VAQIRRAITEAESGNTMAE------GRMTPLGVAQVGATTVRVDDKYKH 517


>gi|153871201|ref|ZP_02000433.1| ATP-dependent RNA helicase DbpA [Beggiatoa sp. PS]
 gi|152072333|gb|EDN69567.1| ATP-dependent RNA helicase DbpA [Beggiatoa sp. PS]
          Length = 466

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 92/463 (19%), Positives = 176/463 (38%), Gaps = 70/463 (15%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L +I +S  T  Q  ++  IL++         I Q   GSGKT    I + + + A    
Sbjct: 23  LESIGYSNMTPIQAESLPSILKNQDV------IAQAKTGSGKTAAFGIGLLSKLNAKNYQ 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA+Q  + I++  + TQ + +  + G  P A +R +L       AHII+
Sbjct: 77  VQALVLCPTRELAEQVGQEIRRLARFTQNVKLLSLCGGKPIAPQRDSLAH----GAHIIV 132

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    QD ++         + L+L   D     G    +             ++  P  
Sbjct: 133 GTPGRIQDHLRKGSLNLKNAHTLVLDEADRMLDMGFYDDMMDI----------ISYLPKK 182

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R  +L S    D          ++P+   +  ++   E+ +R   V     +   +   +
Sbjct: 183 RQTLLFSATFPDSIVQMSHAIQKQPVNIQVESLHSYSEIEQRFYQVKQPQHRKEAVMTLL 242

Query: 493 EEKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              +        +      E    L ++   +IAI HG +   +++ V+  F N +C +L
Sbjct: 243 AHYQPESTVIFCNTKLQCQEIATQLKKNGYYAIAI-HGDLEQKERDQVLLRFANKSCSIL 301

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+D+ D  ++I           +H++ GR GR  +    + LY         
Sbjct: 302 VATDVAARGLDINDLQVVINYELPGSQDIHIHRI-GRTGRAGKKGLALSLYTASEQHKIE 360

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRK---------------------EGEILG--IKQSGMP 642
               +    +     A E L+ +                       G+ILG    + GM 
Sbjct: 361 AIAEI--QNQPCRCDALESLEDKGTLRPPPMITICIHGGKKNKMRPGDILGALTGEIGMT 418

Query: 643 KFLIAQPELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
              + +  + D  S + + R  A ++L    + + ++G+  ++
Sbjct: 419 STQVGKINIFDFYSYVALDRTIANNVLKHLQN-SKIKGRQFKV 460


>gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 496

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 131/363 (36%), Gaps = 36/363 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +PT  Q  AI  +L+          +     G+GKT    + +   +  G        +A
Sbjct: 23  TPTAIQAQAIPAVLEGKDV------MAAAQTGTGKTAGFTLPLLEILSKGKPAQRGQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  + ++ Y  N  +   ++ G +    +  AL++       I++ T  
Sbjct: 77  LVLTPTRELAAQVADSVETYGHNLPLKSAVVFGGVSIVPQIAALKQ----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++ +  L ++++DE  R      L +        VL M   P  R  ++ S
Sbjct: 133 RLLDLCNQRALSFSTLEILVLDEADRM-----LDMGFIRDIRKVLAML--PKQRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     + +    + +  K   +   I++     
Sbjct: 186 ATFSDDIRELAKGLVNNPVEISVTPRNATANTVTQWVTPVGQSDKTSVLIDLIKDNNWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E  +   A IHG  S   +   +  FK G  ++++AT +   
Sbjct: 246 VLVFSRTKHGANRIAKNLEAASIKAAAIHGNKSQGARTKALADFKAGKVQVMVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++  +  +     +H++ GR GR       + L      K  +    ++  
Sbjct: 306 GIDIDQLPFVVNFDLPNVSEDYVHRI-GRTGRAGASGQAVSLVADEEVKLLHDIERLIGR 364

Query: 614 TED 616
             D
Sbjct: 365 VID 367


>gi|163782068|ref|ZP_02177067.1| ATP-dependent RNA helicase DeaD [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882600|gb|EDP76105.1| ATP-dependent RNA helicase DeaD [Hydrogenivirga sp. 128-5-R1-1]
          Length = 361

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 82/379 (21%), Positives = 150/379 (39%), Gaps = 34/379 (8%)

Query: 251 IGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           +    N      Q  L  I F+ PT  QESAI   L+          ++Q   G+GKT  
Sbjct: 1   MQFNFNQLSNRLQNALEEIEFTKPTPIQESAIPVALEGKD------LLIQARTGTGKTGA 54

Query: 310 ALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
             I +   ++ G +A+++AP   LA Q  + ++   + ++I V    G          LE
Sbjct: 55  FGIPIIEKLKRGERALVLAPTRELAIQIRDHLRDLARFSKISVFSFYGGTSVGRDLSLLE 114

Query: 370 RIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           R       +++GT    +D I+        +  L+L  VD     G ++ ++        
Sbjct: 115 RRI---PDVVVGTPGRIKDLIERGALKLDTFKYLVLDEVDIMLDMGFREDIEWI------ 165

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVV 478
              +       +T  +++    +I +I  K          +       RI+E++ R +  
Sbjct: 166 ---VSKLPEERQTFFVSATVPREIREIARKFMKPGFEHISVESEELKPRINEIVVRTRSE 222

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           + + ++   I  + +++K   F  +      L          +  +HG M+   +E+VM 
Sbjct: 223 IHKTEELERILRENDDEKIIVFVKMKRNAKELAYTLRKKGYNVEALHGDMTQKRRETVMK 282

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F+N   K+LIAT V   G+D+   S+II  +         H++ GR GR     + I L
Sbjct: 283 LFRNNRVKVLIATDVASRGLDIEGVSMIINFHLPEDPRVYTHRI-GRTGRFGSEGTAISL 341

Query: 596 YHPPLSKNSYTRLSVLKNT 614
             P   +N +      + T
Sbjct: 342 VSPSEKRNLWRIEKHREKT 360


>gi|57113867|ref|NP_001008986.1| ATP-dependent RNA helicase DDX3Y [Pan troglodytes]
 gi|51315848|sp|Q6GVM6|DDX3Y_PANTR RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|48728366|gb|AAT46349.1| DDX3Y [Pan troglodytes]
          Length = 660

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 146/379 (38%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I      K +   +     GSGKT   L+ + + +   G          
Sbjct: 201 PTPVQKHAIPII------KGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKE 254

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 255 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 313

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 314 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 370

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  +D+    
Sbjct: 371 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFL 429

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L ++ + G  +  +   +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 430 LDILGAAGTDSLTLV-FVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 482

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 483 HQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 541

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 542 FFNEKNINITKDLLDLLVE 560


>gi|218676562|ref|YP_002395381.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324830|emb|CAV26551.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 423

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 153/412 (37%), Gaps = 38/412 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + F+ PT  QE AI  +L+          +     G+GKT    + +   +      
Sbjct: 21  LSELNFTAPTSVQEQAIPLVLEGKDV------LAGAQTGTGKTAAFGLPIIQRLIETKDN 74

Query: 323 --------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                   +A+++ P   LAQQ ++ +  Y + T I V +  G +    + + L     G
Sbjct: 75  VIPNPKLVRALVLVPTRELAQQVFDNVTSYAKGTDIKVVVAYGGVSMKVQTENLR----G 130

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            A I++ T     D +    ++L    E        R+           +L     + +T
Sbjct: 131 GADILVATPGRLIDHMFTKNIMLSH-TEVLVLDEADRMLDMGFMPDIKRILSRMNEVRQT 189

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L  ++  D  I  +  +   + P +  + P N   + + ++   + + +K+  +   I  
Sbjct: 190 LFFSATFDNKIKALAHR-MMQSPSEIQVTPKNSTADTVTQMVYPVDKSRKSELLAYLIGS 248

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           K           +   +      +      A I+G  S   ++  +D FK+G  + LIAT
Sbjct: 249 KNWQQVLVFTKTKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIAT 308

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+     ++  +        +H++ GR GR       I L     +       
Sbjct: 309 DVAARGIDIQQLEQVVNYDMPFKAEDYVHRI-GRTGRAGNSGLAISLMSQDEAYLLGDIE 367

Query: 609 SVL-----KNTEDGFLIA-EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
            +L     +   +GF  + E+DL   + G      +S   + + A+ ++H +
Sbjct: 368 RLLDTRLPQEWLEGFEPSLEKDLAPDRGGR--SKSRSSEKRKMKAKLKIHQN 417


>gi|238879720|gb|EEQ43358.1| hypothetical protein CAWG_01593 [Candida albicans WO-1]
          Length = 562

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 137/383 (35%), Gaps = 44/383 (11%)

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            +  + +   +  P  PT  Q       L        M+ I     GSGKTL   +    
Sbjct: 136 PDYVLQEVKDQGFP-KPTPIQCQGWPMAL----SGRDMIGI--AATGSGKTLSYCLPSIV 188

Query: 317 AVEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
            + A  Q         +++AP   L  Q      K+ ++++I    + G  P+  + + L
Sbjct: 189 HINAQPQLQYGDGPIVLVLAPTRELTVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDL 248

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKA 418
            R       I I T     D ++  K        L+L   D     G + +++    Q  
Sbjct: 249 AR----GVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 304

Query: 419 TAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVI 472
                L+ +AT     + L    L D     I           T    VI   ++ D ++
Sbjct: 305 PDRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLV 364

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           + L+  L+E      +         S  R+  E    L      ++AI HG     +++ 
Sbjct: 365 KHLESALNEKDNKILVF-------ASTKRTCDEITTYLRSDGWPALAI-HGDKEQNERDW 416

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           V+D F+ G   +++AT V   GIDV   + +I  +        +H++ GR GRG    + 
Sbjct: 417 VLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRI-GRTGRGGASGTA 475

Query: 593 ILLYHPPLSKNSYTRLSVLKNTE 615
           I  +    SK       +++   
Sbjct: 476 ISFFTEGNSKLGGDLCKIMREAN 498


>gi|73969113|ref|XP_860733.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 12 [Canis
           familiaris]
          Length = 656

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 84/454 (18%), Positives = 156/454 (34%), Gaps = 64/454 (14%)

Query: 202 IAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF-------KKEIGIP 254
             + +++   P+  K+F    P   RL        ++  L  +K+          +    
Sbjct: 39  RKKKWDLSELPKFEKNFYVEHPEVARL-----TPYEVDELRRKKEITVRGGDVCPKPVFA 93

Query: 255 I---NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N    +   ++      PT  Q       L        M+ I Q   GSGKTL  L
Sbjct: 94  FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL----SGRDMVGIAQ--TGSGKTLAYL 147

Query: 312 IAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +     +          G   +++AP   LAQQ  +    Y + +++    I G  P+  
Sbjct: 148 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGP 207

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + LER       I I T     D ++  K        L+L   D     G + +++  
Sbjct: 208 QIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 263

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINR 467
             Q       L+ +AT       L      D ++I     E  A      I  V +   +
Sbjct: 264 VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEK 323

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++I+ ++ +++E +    I            +   +               IHG  S 
Sbjct: 324 DHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDKSQ 375

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGID------VVDASIIIIENAEHFGLAQLHQLRG 581
            +++ V++ F++G   +LIAT V   G+       V D   +I  +  +     +H++ G
Sbjct: 376 PERDWVLNEFRSGKAPILIATDVASRGLGFCIYVYVEDVKFVINYDYPNSSEDYVHRI-G 434

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           R  R     +    + P   K +   + VL+   
Sbjct: 435 RTARSTNKGTAYTFFTPGNLKQARELIKVLEEAN 468


>gi|170758353|ref|YP_001787402.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405342|gb|ACA53753.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 376

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 128/369 (34%), Gaps = 39/369 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE +I      M  KN    I +   G+GKTL  L+ M   +       Q +I+ 
Sbjct: 24  EPTPIQEESI------MLIKNGNDVIAEAQTGTGKTLAFLLPMFENISPNINAIQGLIIT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  +   + +    G      + K L        H++I T     D
Sbjct: 78  PTRELAIQITEEAMKLKKAKDLNILAAYGGKDIGSQIKKL----KNNIHLVIATPGRLLD 133

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPRT--LV 436
            +            L+L   DE    G +   R  +         L  +AT       L 
Sbjct: 134 HLNRNTLNFKDLKTLVLDEADEMLLMGFKNEVRSIIENTPRKRQTLCFSATMNSEVKKLA 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
             ++ D  +  I ++    K IK V+I      +  +  K++  E      I  +     
Sbjct: 194 YKNMRDPKLIIIEKEEVTLKNIKQVLIETTDRRKQEDLCKILNEENPFMAIIFCRT---- 249

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+           +   +HG M+   +E +M SFKN   + LIAT V   G+D
Sbjct: 250 ----KRRVDNLEEDLYKKGYNCEKLHGSMTQPKRERIMRSFKNLEIQYLIATDVAARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + +   +      + +H++ GR GR  E     L   P   +        +K    
Sbjct: 306 ITGVTHVFNYDIPENSESYIHRI-GRTGRAGEKGYTFLFVAPKDEQTLDMIEKEIK---- 360

Query: 617 GFLIAEEDL 625
            F I    L
Sbjct: 361 -FKIPRRTL 368


>gi|126698411|ref|YP_001087308.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|306519448|ref|ZP_07405795.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-32g58]
 gi|115249848|emb|CAJ67665.1| putative ATP-dependent RNA helicase [Clostridium difficile]
          Length = 369

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 127/357 (35%), Gaps = 34/357 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  Q+ +IK I +          I +   G+GKTL  L+ +   +       Q +I++
Sbjct: 23  TPTPIQKESIKLIKEGKDV------IAEAQTGTGKTLAFLLPIFENISLDINDIQVLILS 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  ++  + +    G      + K L     G  H+II T     D
Sbjct: 77  PTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIKKL----KGNIHMIIATPGRLLD 132

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--LV 436
            +    +        +L   D+    G +  +   L + +     L  +AT   +   L 
Sbjct: 133 HLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNKKQTLCFSATINSQVKKLA 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                +  +  I ++      IK  ++      ++    KV+  +      I  +     
Sbjct: 193 YRYTKNPVVVSIQKEEITLNNIKQEVVETTDRKKLDALCKVLDEDNPFMAIIFCRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+           +   +H  ++   +E +M SF+N   + LIAT V   G+D
Sbjct: 249 ----KRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLIATDVASRGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           +   S I   +        +H++ GR GR  E         P   +      + +++
Sbjct: 305 ISGVSHIYNYDLPETPEDYIHRI-GRTGRAGEEGYTCAFIDPKNERMLSEIETAIES 360


>gi|15892943|ref|NP_360657.1| ATP-dependent RNA helicase RhlE [Rickettsia conorii str. Malish 7]
 gi|15620136|gb|AAL03558.1| ATP-dependent RNA helicase RhlE [Rickettsia conorii str. Malish 7]
          Length = 414

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 137/342 (40%), Gaps = 35/342 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQAVIMAPI 330
            PT+ Q+ +I   +           +     GSGKTL  L+ +  + ++    A+I+ P 
Sbjct: 25  EPTEIQKQSIPVAMAG------SDILASSQTGSGKTLAYLLPLIDSFIKNKTTALILVPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q +  + K T + +I   ++ G  P   +   L++       +IIGT     D +
Sbjct: 79  RELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFIQLKK----NPKVIIGTPGRIIDHL 134

Query: 391 QYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               L        +L  +D     G++++L+   K               + L+ ++   
Sbjct: 135 NRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEK---------RQVLMFSATMP 185

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----E 497
             I  +++K     P++  +   N+    I++  + +S+ +K   +  Q+  ++      
Sbjct: 186 KHIIAVSQKYLN-NPVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLGNREGSVIIF 244

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++   + ++   +   IHG +S   +E V+ SF+    ++++AT V   G+D+
Sbjct: 245 VKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDI 304

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
                +I  +        LH++ GR GR       +    P 
Sbjct: 305 PHTQHVINYDLPMCPEDYLHRI-GRTGRAGATGHALSFISPD 345


>gi|28211174|ref|NP_782118.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28203614|gb|AAO36055.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 481

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 82/367 (22%), Positives = 137/367 (37%), Gaps = 39/367 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           P+K Q+  I   +++         I++   GSGKT    I +   V   E   QA+++ P
Sbjct: 27  PSKVQQKVIPVAIKNKD------IIVKSKTGSGKTASFGIPICENVNLEERKPQALVLTP 80

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q  E IK   +  +I    I G  P   +   L++    + H+++GT     D 
Sbjct: 81  TRELCIQVKEDIKNIGRFKRIKCSAIFGKQPFKTQALELKQ----RTHVVVGTPGRTLDH 136

Query: 390 IQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDI 443
           I+       K+   IVDE         +   +        +M   P  R  ++ ++    
Sbjct: 137 IERGTIDLDKIKYFIVDEGDEMFNMGFIDQVES-------IMRKLPKKRVNMLFSATIPE 189

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC-PQIEEKKE----- 497
            I K+ EK   + PI   + P    +E I+ +   + +  K   +    I E  +     
Sbjct: 190 KIEKLCEKYM-KSPIMIEVNPEEFTEEKIQHIYYEIEDKNKFDLLNKILITENPDSSIIF 248

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +  V +   L E+       +HG M    +  +M+ FK G    L+AT +   GIDV
Sbjct: 249 CRTQENVNKLAKLMENKDYPCKALHGGMMQDKRIDIMNRFKRGEFMFLVATDLAARGIDV 308

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            + + II  +        +H+  GR GR       I L  P   +        +     G
Sbjct: 309 ENVTHIINYDIPMEKENYVHR-TGRTGRAGREGCAISLVTPYEDRFFKQIEEYI-----G 362

Query: 618 FLIAEED 624
           F I   D
Sbjct: 363 FKIKLGD 369


>gi|225850461|ref|YP_002730695.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
 gi|225644960|gb|ACO03146.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
          Length = 403

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/338 (21%), Positives = 128/338 (37%), Gaps = 30/338 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT+ QE  I  IL+          I Q   G+GKT    I +   V       QA+++ 
Sbjct: 33  KPTEVQEKTIPLILEGKD------IIAQAQTGTGKTAAFGIPIVETVNTKSRKIQALVLV 86

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + IK   +  +I    + G     H+   L+    G+  +I+GT    +D
Sbjct: 87  PTRELAIQVTKEIKDIGREKRIFALAVYGGKSIRHQIDFLK---KGKDVVIVGTPGRIKD 143

Query: 389 SIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            I+   L L  V     DE  R      ++  +       +     P+ +TL+ ++    
Sbjct: 144 LIERKVLNLNDVKIFVLDEADRMLDMGFIEDIEF------IFEQTPPVKQTLLFSATMPK 197

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
            I ++ E+          I P     + I++    +  GK+   +   + E +       
Sbjct: 198 AIMRLAERFLNDDYEIVKIKPEEVTVDRIKQKAYRVDTGKEFETLTKILNENEGKKSIVF 257

Query: 504 VER---FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            E     + L +       +   IHG  S   +E V+  F+     +L+AT V   G+D+
Sbjct: 258 TETKRGADELSKKLRREGFNADAIHGDYSQAKRERVLRDFRRNRIDILVATDVAARGLDI 317

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
               ++   +      + +H++ GR GR  +    I +
Sbjct: 318 KGVDVVYNYSLPRDVESYIHRI-GRTGRAGKDGLAISI 354


>gi|150400366|ref|YP_001324133.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           vannielii SB]
 gi|150013069|gb|ABR55521.1| DEAD/DEAH box helicase domain protein [Methanococcus vannielii SB]
          Length = 538

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 125/347 (36%), Gaps = 41/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            PT  QE AI  ++     K  M  + Q   G+GKT    + +   ++      QA+I+ 
Sbjct: 24  EPTPIQEKAIPILI-----KGEMDIVGQAQTGTGKTAAFGLPIIETIDTNSRNTQALILT 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I     + ++ +  + G      + K L+R       I++GT     D
Sbjct: 79  PTRELAIQVAEEIDSLKGSRRLNIFPVYGGQSIDRQIKELKR----GVQIVVGTPGRILD 134

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQR--LKLTQKATAPHVLLMTATPIPRTLVLT 438
            I    + L  V        DE    G        L    T   +LL +AT     + L 
Sbjct: 135 HISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVNTEKRMLLFSATLPDSIMKLA 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
                D   I  K        T            ++    +S   K   +   ++ +KE 
Sbjct: 195 ENYMRDYETIKVKKQQLTTNLT------------DQSFYEISPRDKFELLSRIMDTEKEF 242

Query: 498 -----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   ++ V+  ++           +HG M+   +E  +D FK     +L+AT V  
Sbjct: 243 YGLIFCKTKADVDDLSARLVERGYPAEGLHGDMTQAQREKTLDKFKRRRTTVLVATDVAA 302

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            GID+ + + ++  +      + +H++ GR GR  +    I    P 
Sbjct: 303 RGIDINELTHVVNYDLPQNPESYVHRI-GRTGRAGKQGYAITFVEPS 348


>gi|221065648|ref|ZP_03541753.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220710671|gb|EED66039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 473

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 70/380 (18%), Positives = 136/380 (35%), Gaps = 32/380 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
           S T  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 25  SMTPIQAQAIPVVLTGKDV------MGAAQTGTGKTAAFSLPLLQRLMRHENASASPARH 78

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   LA Q  + I  Y ++T++   ++ G M    +   L++       +++
Sbjct: 79  PVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQTLELKK----GVEVLV 134

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D I+   ++L  V E        R+           +L        TL+ ++ 
Sbjct: 135 ATPGRLLDHIEAKNVVLNQV-EYVVLDEADRMLDIGFLPDLQRILSYLPKSRTTLLFSAT 193

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
              +I ++      + P+   +   N     +E+    +S+  K Y I   ++E+     
Sbjct: 194 FSPEIKRLAGSYL-QDPVTIEVARPNETASTVEQRFYKVSDDDKRYAIRSVLKERDIRQA 252

Query: 499 ----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +    R     E        +HG  S  ++   +++FK G   LL+ T V   G
Sbjct: 253 FIFSNSKLGCARLTRALERDGLRAGALHGDKSQDERLKALEAFKAGEVDLLVCTDVAARG 312

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+ D   +   +        +H++ GR GR       + L     S+N      ++K  
Sbjct: 313 LDIKDVPAVFNYDVPFNAEDYVHRI-GRTGRAGASGLAVTLVTDHDSRNVADIEKLIKKK 371

Query: 615 EDGFLIAEEDLK--QRKEGE 632
            D       DL+  +R  G+
Sbjct: 372 IDVEPAPMLDLRPPRRSRGD 391


>gi|255083352|ref|XP_002504662.1| predicted protein [Micromonas sp. RCC299]
 gi|226519930|gb|ACO65920.1| predicted protein [Micromonas sp. RCC299]
          Length = 462

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 136/361 (37%), Gaps = 30/361 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
            P+  Q  +   +L      + M+ I     GSGKT+   +     + A         Q 
Sbjct: 70  KPSPIQAQSWPIVL----SGHDMVGI--AATGSGKTMAFGLPALMQILAQPKCAPGSPQC 123

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LAQQ  +  +       +    + G  P+  ++K +++   G   +I+ T  
Sbjct: 124 LVLAPTRELAQQTAKVFEDAGTACGVRCVCVYGGAPKWEQKKLMQQG--GGCAVIVATPG 181

Query: 385 LFQD-----SIQYYKLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTATPIP-- 432
             +D      ++  K+ ++++DE  R        + R    +       ++ +AT     
Sbjct: 182 RLRDFMNDGDVKLDKVTMLVLDEADRMLDLGFEPEIREIAGKTRADRQTVMFSATWPTSI 241

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           + L    + +    +I  +        T ++ +   +E    L  VL +        P+ 
Sbjct: 242 QGLAAEFMCNPVKVRIGAEGLKASHSVTQVVEVVEPNEKDAHLARVLKKYLGGKKPVPR- 300

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                + ++    R +          A IHG MS  D+E  +++FK+G+  LLIAT V  
Sbjct: 301 -TLVFALYKKECARLHENLRRQNWQAACIHGDMSQRDRELSVEAFKSGSSPLLIATDVAA 359

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+     +I           +H++ GR GR  +       +       +    +VL+
Sbjct: 360 RGLDIKGVEYVINYTFPLTTEDYVHRI-GRTGRAGQTGLAHTFFTQHDKARAGELANVLR 418

Query: 613 N 613
            
Sbjct: 419 E 419


>gi|224086197|ref|XP_002193200.1| PREDICTED: DEAD box polypeptide 42 protein [Taeniopygia guttata]
          Length = 923

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 83/457 (18%), Positives = 153/457 (33%), Gaps = 60/457 (13%)

Query: 213 RKAKDFEWTSPARERLAYDE------LLAGQIALLLMRKQFKKEIGIP---------INV 257
                 E   P  E+  YDE      L   Q+  L  +   +     P            
Sbjct: 201 PPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGF 260

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           + ++  +I ++    PT  Q   +   L        M+ I     GSGKT   +  M   
Sbjct: 261 DEQLMHQIRKSEYTQPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAAFIWPMLIH 314

Query: 318 VEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +          G  AVI+ P   L QQ +   K++ +   +    + G      + KAL+
Sbjct: 315 IMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQ 374

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP 421
                 A I++ T     D ++           L+    D     G + +++        
Sbjct: 375 E----GAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVR- 429

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                   P  +TL+ ++     I K+  +     PI+ V   I   +E + ++  +   
Sbjct: 430 --------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVTQIVEIFPS 480

Query: 482 GK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           G  K  W+  ++ E             ++  E   +  +    ++ ++HG M   ++  V
Sbjct: 481 GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV 540

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  FK     +L+AT V   G+D+     +I  +         H++ GR GR  E     
Sbjct: 541 ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGRAGEKGVAY 599

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
            L  P  S  +   +  L+           DL  +  
Sbjct: 600 TLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNP 636


>gi|91179152|gb|ABE27760.1| pl10-like protein [Chlamys farreri]
          Length = 760

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 131/376 (34%), Gaps = 48/376 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ +I  +L       +   +     GSGKT   L+ +   V   G         
Sbjct: 300 KPTPVQKYSIPIVLS------KRDLMACAQTGSGKTAAFLVPVLNRVYDNGPGDIPTQNN 353

Query: 324 -------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                        A+I+AP   LA Q Y+  +K+   +++   ++ G      + + L+R
Sbjct: 354 QQGRYSRRKQYPVALILAPTRELASQIYDEARKFAYRSRVRPCVVYGGADIGAQIRDLDR 413

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLL 425
                 H+++ T     D I+  K+ L      ++DE  R          ++      + 
Sbjct: 414 ----GCHLLVATPGRLVDMIERGKIGLDYCKFLVLDEADRMSDMGFEPQIRRIVEKDTMP 469

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
            + T   +TL+ ++    +I  +         I   +  +    E I +  V + EG K 
Sbjct: 470 PSGT--RQTLMFSATSPKEIQILARDFLD-NYIFLAVGRVGSTSENITQKVVWVEEGDKR 526

Query: 486 YWICPQIE--------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            ++   +                +   +               IHG  S  ++E  +  F
Sbjct: 527 SFLLDLLNAAAGPEALTLTFVETKKGADALEDFLIVEGYPATSIHGDRSQKEREEALRQF 586

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +NG   +L+AT V   G+D+ +   ++  +        +H++ GR GR   +      ++
Sbjct: 587 RNGDRPILVATAVAARGLDIPNVRHVVNFDLPSDIEEYVHRI-GRTGRVGNLGLATSFFN 645

Query: 598 PPLSKNSYTRLSVLKN 613
                     + +L  
Sbjct: 646 EKNKNIIRDLMDLLVE 661


>gi|159489124|ref|XP_001702547.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280569|gb|EDP06326.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 600

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 133/372 (35%), Gaps = 41/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQ------- 323
            PT  Q+ +I   L           +     GSGKT      + A+ +  G Q       
Sbjct: 166 KPTPVQKHSITIGLAGRD------LMACAQTGSGKTAAFCFPIIASMLMKGYQPAAGRNS 219

Query: 324 ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                 A+++AP   L  Q Y+  +K+T  T +   +I G  P  ++ + LER       
Sbjct: 220 RKALPGALVLAPTRELTSQIYDEARKFTYMTGLRPVVIYGGAPAPNQLRDLER----GCD 275

Query: 378 IIIGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I++ T     D I+  ++ L       +DE  R          Q         M      
Sbjct: 276 ILVATPGRLSDFIERGRVGLSSIVFLCLDEADRMLDMGFEP--QIRRIVEQEDMPPVGHR 333

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--CP 490
           +TL+ ++    +I ++           TV    +  D +++ ++ V  E K+   +    
Sbjct: 334 QTLMFSATFPKEIQRLASDFLANYVFLTVGRVGSSTDLIVQHIEYVTPEEKQNTLLDLIS 393

Query: 491 QIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            +E  +           +   +    +          IHG  S   +E  + SFK+G   
Sbjct: 394 TVEVSRRQGLTLVFVETKRGADELERILTRNQLPATSIHGDRSQEQREMALRSFKSGKTP 453

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +++AT V   G+D+   + +I  +        +H++ GR GR          +    +  
Sbjct: 454 VMVATDVAARGLDIPHVTHVINYDLPKDIDDYVHRI-GRTGRAGHKGLATAFFTDSDAPL 512

Query: 604 SYTRLSVLKNTE 615
           + + + VL  T 
Sbjct: 513 ARSLVEVLTETN 524


>gi|282158103|ref|NP_001164095.1| ATP-dependent RNA helicase p62 [Tribolium castaneum]
          Length = 549

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 150/440 (34%), Gaps = 54/440 (12%)

Query: 213 RKAKDFEWTSPARERL-----AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           +   D +   P ++       A       ++      K+   +   P  ++         
Sbjct: 63  KPNWDMKNLRPFKKDFYVPHPAVANRSKYEVEQYRRSKEITIDGDAPNPIQNFEEACFPD 122

Query: 268 NIPFS--------PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            +           PT  Q       +        ++ I Q   GSGKTL  ++     + 
Sbjct: 123 YVQHEIQKQGYDTPTAIQAQGWPIAM----SGKDLVGIAQ--TGSGKTLAYILPAIVHIN 176

Query: 320 A--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G  A+++AP   LAQQ  +    +  ++ +    I G  P+  + + LER 
Sbjct: 177 NQPSIARGDGPIALVLAPTRELAQQIQQVAHDFGSSSYVRNTCIFGGAPKGPQARDLER- 235

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAP 421
                 I I T     D ++           L+L   D     G   Q R  + Q     
Sbjct: 236 ---GVEICIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 292

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRKPIKTV-IIPINRIDEVIERLK 476
             L+ +AT       L      +  +I     +  A    ++ V +   +  +  +  L 
Sbjct: 293 QTLMWSATWPKEVRKLAQDFLRNYVQINIGSLQLSANHNILQIVDVCQEHEKETKLNNLL 352

Query: 477 VVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             + + G+    I   +E KK+       E        +      +HG  S  +++ V+ 
Sbjct: 353 QEIGNNGEPGAKIIIFVETKKKV------ESITRTIRRYGWPAVCMHGDKSQQERDFVLR 406

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F+NG   +LIAT V   G+DV     +I  +  +     +H++ GR GR +   +    
Sbjct: 407 EFRNGKSSILIATDVAARGLDVEGIKYVINYDYPNSSEDYIHRI-GRTGRSDTTGTSYAF 465

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   + +   +SVLK   
Sbjct: 466 FTPSNFRQAKDLVSVLKEAN 485


>gi|312898631|ref|ZP_07758021.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
 gi|310620550|gb|EFQ04120.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
          Length = 522

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 95/443 (21%), Positives = 164/443 (37%), Gaps = 69/443 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-----QAVI 326
            PT  QE +I   L+          I Q   G+GKT    I +   + A G     Q+VI
Sbjct: 29  EPTPIQEGSIPVALEGHD------MIGQAQTGTGKTAAYGIPVLEKILAAGAPKELQSVI 82

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           ++P   LA Q  E I    Q T +    I G      + + L +       II+ T    
Sbjct: 83  LSPTRELAIQVAEEINHLAQYTPVQALPIYGGQDMERQLRRLRKS----PQIIVATPGRL 138

Query: 387 QDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
            D ++   + L  +        DE    G    +           L+M+ATP   +TL+ 
Sbjct: 139 IDHMKRGTVKLSSISTIVLDEADEMLNMGFIDDIN----------LIMSATPETRQTLLF 188

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI---EE 494
           ++     I K+ E       I  +      ID ++E+  + +++ +K   +C  +   E 
Sbjct: 189 SATMPAPIQKLAETFLKDPQIIRMKAKEVTID-LVEQSYIEVADRQKFDVLCRLLDLQEP 247

Query: 495 KKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L E       S   IHG ++   ++SV+  F+  T  +L+AT V 
Sbjct: 248 DLAIIFVRTKRRVDELSEGLKKRGYSAEGIHGDLTQAKRDSVIRQFREKTIDILVATDVA 307

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+   + +   +      + +H++ GR GR  +         P    +  T   ++
Sbjct: 308 ARGLDISGVTHVYNYDLPQDPESYVHRV-GRTGRAGQSGEATTFVIPREIDHLRTIEKLI 366

Query: 612 KNTEDGFLIAEEDLKQRKE----GEILGIKQSGMPKFLIAQPELH--------DSLLEIA 659
           K            + +RK       + G +Q+ +     A  E          + LLE  
Sbjct: 367 K----------HRISRRKAPSFSEALEGAQQTALRNLSTAAEEGDVTAYRASAEELLETY 416

Query: 660 RK-----DAKHILTQDPDLTSVR 677
                   A  +L ++PD T V+
Sbjct: 417 DSVTLVAAAVKLLIKEPDTTPVK 439


>gi|152986227|ref|YP_001345953.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PA7]
 gi|150961385|gb|ABR83410.1| DEAD/DEAH box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Pseudomonas aeruginosa PA7]
          Length = 458

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 84/454 (18%), Positives = 174/454 (38%), Gaps = 49/454 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ +   T  Q  ++  ILQ          I Q   GSGKT    + + A +     G
Sbjct: 19  LDSLGYREMTPIQAQSLPLILQGRD------LIAQAKTGSGKTAAFGLGLLAPLNPRYFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    I V  + G +P   +  +LE      AH+++
Sbjct: 73  CQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEH----GAHVVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L+L  ++        + L +    +   ++        +TL+ ++ 
Sbjct: 129 GTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPER-RQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I K+ +  A  +  + V +     D  IE+    +   ++   +   ++  +    
Sbjct: 188 YPDGIEKLAK--AFMRDPQQVKVESLHTDSQIEQRFFEIDPKQRMDAVVRLLQHFRPQSC 245

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R   +      +    S   +HG +   +++ V+  F N +C +L+AT V   G
Sbjct: 246 VAFCQTRQQCQELADALKAHRISALALHGDLEQRERDQVLTVFANRSCTVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+     +I           +H++ GR GR  E    + L  P  +  +     + K  
Sbjct: 306 LDIAALETVINVELARDPEVHIHRI-GRSGRAGEKGLALSLVAPAEASRAQAIEDLQKQP 364

Query: 615 EDGF-------------------LIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD 653
              +                    IA     + + G++LG     +G+P   + +  + D
Sbjct: 365 LAWYALGQLKANPEPLLPPMSTLCIAGGRKDKVRPGDLLGALTGDAGLPGSAVGKIAIFD 424

Query: 654 --SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
             + + I R  A   L +  +   ++G+S ++ L
Sbjct: 425 FQAFVAIERGLAHQALKRLSE-GRIKGRSFKVRL 457


>gi|224042619|ref|XP_002190578.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
           [Taeniopygia guttata]
          Length = 675

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 143/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + A G          
Sbjct: 219 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKE 272

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K+   +++   ++ G      + + LER 
Sbjct: 273 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLER- 331

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 332 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 388

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 389 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEPDK-RSF 446

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 447 LLDLLNATGKDSLTLVFVETKK------GADALEDFLYHEGYACTSIHGDRSQRDREEAL 500

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 501 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 559

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 560 FFNERNINITKDLLDLLVE 578


>gi|195437123|ref|XP_002066494.1| GK18312 [Drosophila willistoni]
 gi|194162579|gb|EDW77480.1| GK18312 [Drosophila willistoni]
          Length = 1424

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 132/365 (36%), Gaps = 43/365 (11%)

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QA 324
            PT  Q+ +I  I            +     GSGKT   L+ +   +   G        QA
Sbjct: 1036 PTPIQKVSIPVISAGRD------LMACAQTGSGKTAAFLLPILNHILDKGYELEIGKPQA 1089

Query: 325  VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            +IM+P   LA Q +   +K+  N+ + + I+ G     ++ +++ +      HI+I T  
Sbjct: 1090 IIMSPTRELAVQIFNEARKFAHNSYLKITIVYGGTSVKYQNESITK----GCHILIATPG 1145

Query: 385  LFQDSIQY--------YKLILVIVDEQHRFGV----QQRLKLTQKATAPHVLLMTATPIP 432
               D ++           ++L   D     G     ++ +           L+ +AT   
Sbjct: 1146 RLLDFVERTFITFEDTRFVVLDEADRMLDMGFSESMRKIITHPTMRKEHQTLMFSATFPE 1205

Query: 433  --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
              + +    L D     I         +   I  +++ ++  + ++ +L +G     +  
Sbjct: 1206 EIQRMAGEFLRDYVFVTIGVIGGACSDVTQTIYEVDKFNKRAKLME-ILRDGADGTIVFV 1264

Query: 491  QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                      +   +   S           IHG      +E  +  FK+G  K+LIAT+V
Sbjct: 1265 --------ETKRGADFLASFFSETEFPTTSIHGDRLQSQREQALREFKSGKMKVLIATSV 1316

Query: 551  IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN-SYTRLS 609
               G+D+ + S +I  +        +H++ GR GR          +     +  +   + 
Sbjct: 1317 ASRGLDIKNVSHVINYDMPSTIDDYVHRI-GRTGRVGNNGRATSFFDSDKDRALAGDLVK 1375

Query: 610  VLKNT 614
            +L+ +
Sbjct: 1376 ILEGS 1380


>gi|309776780|ref|ZP_07671754.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915528|gb|EFP61294.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 438

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 141/373 (37%), Gaps = 33/373 (8%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N+   I + I      +PT  QE AI   LQ          +     G+GKT    I  
Sbjct: 6   LNITEPILKAINEQGYLTPTPIQEQAIPYALQGRD------ILGCAQTGTGKTAAFSIPT 59

Query: 315 AAAVEAGG----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
              +        +++I+ P   LA Q  E I  Y ++T I   +I G +PQ  + + L+ 
Sbjct: 60  IQLLNRHEKRYIRSLIVTPTRELAIQIQENICAYAKHTGIRSAVIFGGVPQKPQERILKA 119

Query: 371 IAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
                  I++ T     D IQ       ++ + I+DE  R      L   +       L+
Sbjct: 120 ----GVDILVATPGRLNDLIQQGIVDIGRIEIFILDEADRMLDMGFLPDVK------RLI 169

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
                  +TL  ++    +I  + E    + PI   + P     E I++    + +  K 
Sbjct: 170 AKLPKKKQTLFFSATMPKEIRALAES-LLKNPISIEVTPAATTVEKIDQTLYYVDKANKK 228

Query: 486 YWICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +   + + +  N       +S   R          +  +IHG  S   ++  +  FK 
Sbjct: 229 RLLLKLLNKNRVQNALVFTRTKSNANRLAKYLNEAGVAAGVIHGNKSQNARQQALLQFKE 288

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L+AT +   GIDV + S +   +  +     +H++ GR GR     + I      
Sbjct: 289 GKSRVLVATDIAARGIDVQELSHVFNYDIPNEAEVYVHRI-GRTGRAGRQGTAIAFSDIN 347

Query: 600 LSKNSYTRLSVLK 612
            ++   +   +++
Sbjct: 348 EAEYIKSIEKLIR 360


>gi|322708721|gb|EFZ00298.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Metarhizium
            anisopliae ARSEF 23]
          Length = 1245

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 145/393 (36%), Gaps = 47/393 (11%)

Query: 265  ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
            ++ N+ +  PT  Q  AI  ++           +     GSGKT+  L+ M   +     
Sbjct: 632  VIDNLGYEKPTTIQMQAIPTLMSGRDV------VGVAKTGSGKTVAFLLPMFRHIMDQPP 685

Query: 321  -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                 G   +IM P   LA Q +   K + ++  +      G  P   +   L+R     
Sbjct: 686  IKDTDGPVGLIMTPTRELATQIHRDCKPFLKSMGLRAVCAYGGAPIRDQIAELKR----G 741

Query: 376  AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            A II+ T     D +           ++  V++DE  R           K      +   
Sbjct: 742  AEIIVCTPGRMIDLLAANQGRVTNLRRVTYVVLDEADRMFDMGFEPQVMK------IFAG 795

Query: 428  ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              P  +T++ ++     I  +T+K   + P++  +   + + + IE++  V  E  K   
Sbjct: 796  MRPDKQTILFSATMPRIIDSLTKK-VLKSPVEITVGGRSVVAKEIEQIVEVREENTKFLR 854

Query: 488  ICPQIEEKKESNFR-------SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
            +   + E  + +            E+ + L +           IHG    +D++S +  F
Sbjct: 855  VLELLGELYDRDEDARALIFVDRQEKADDLLKELMVKGYPCMSIHGGKDQVDRDSTISDF 914

Query: 538  KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            K G   LL+AT+V   G+DV    ++I  +A +     +H+  GR GR       +    
Sbjct: 915  KKGVVPLLVATSVAARGLDVKQLKLVINYDAPNHLEDYVHR-AGRTGRAGNTGVAVTFVT 973

Query: 598  PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
            P     +      L+ +E    + E   + RK 
Sbjct: 974  PDQENCAPGIAKALEQSEQ--PVPERLNEMRKA 1004


>gi|156977695|ref|YP_001448601.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
 gi|156529289|gb|ABU74374.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
          Length = 527

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 63/343 (18%), Positives = 130/343 (37%), Gaps = 36/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  +L+          +     G+GKT    + +   +  G +       A
Sbjct: 23  TPSPIQAQAIPAVLEGKDV------MAAAQTGTGKTAGFTLPILERLSNGPRVRSNHIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +  Y+++  +   ++ G +    +   L +     A +++ T  
Sbjct: 77  LVLTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRLRK----GADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRK-------ILELLPKQRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +  +   K     P++  + P N     +E+        KKA  +   I++     
Sbjct: 186 ATFSNEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPADVKKKAPMLVKLIKDGDWKQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R          + A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           GID+     ++           +H++ GR GR  E+   I L 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRI-GRTGRAGEVGKAISLV 347


>gi|164424171|ref|XP_962960.2| ATP-dependent RNA helicase dbp-2 [Neurospora crassa OR74A]
 gi|157070404|gb|EAA33724.2| ATP-dependent RNA helicase dbp-2 [Neurospora crassa OR74A]
          Length = 546

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 140/371 (37%), Gaps = 42/371 (11%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------ 320
           +  P +PT  Q       L           +   + GSGKTL   +     + A      
Sbjct: 134 QGFP-APTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAP 186

Query: 321 --GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G   +I+AP   LA Q  + I K+ ++++I    + G +P+  + + L R       +
Sbjct: 187 GDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDLSR----GVEV 242

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTA 428
            I T     D ++  K        L+L   D     G   Q R  + Q       L+ +A
Sbjct: 243 CIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSA 302

Query: 429 TPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEG 482
           T     R L    L D     I           T I+ +     + D +I+ L+ ++   
Sbjct: 303 TWPKEVRNLAADFLTDFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIKHLEKIMEGR 362

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +    I      K     R   +    L +    +++I HG     +++ V+D FK G  
Sbjct: 363 ENQNKILIFTGTK-----RVADDITRFLRQDGWPALSI-HGDKQQNERDWVLDQFKTGKS 416

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +++AT V   GIDV + + ++  +  +     +H++ GR GR     + I  +    SK
Sbjct: 417 PIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRI-GRTGRAGAKGTAITFFTTDNSK 475

Query: 603 NSYTRLSVLKN 613
            +   + VL+ 
Sbjct: 476 QARELVGVLQE 486


>gi|256852006|ref|ZP_05557393.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           27-2-CHN]
 gi|260661425|ref|ZP_05862338.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           115-3-CHN]
 gi|282931887|ref|ZP_06337366.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|297205122|ref|ZP_06922518.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           jensenii JV-V16]
 gi|256615418|gb|EEU20608.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           27-2-CHN]
 gi|260547880|gb|EEX23857.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           115-3-CHN]
 gi|281303998|gb|EFA96121.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|297149700|gb|EFH29997.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           jensenii JV-V16]
          Length = 484

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 83/419 (19%), Positives = 152/419 (36%), Gaps = 49/419 (11%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE  I   L           I Q   G+GKT    + +   +       QA+
Sbjct: 20  GFEEATPIQEKTIPLALAGKDV------IGQAQTGTGKTAAFGLPILQKINNKEHFIQAL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E + +  ++ +  V+++ G    + + +AL++       I++GT   
Sbjct: 74  VIEPTRELAIQTQEELYRLGRDEKAKVQVVYGGADISRQIRALKQ----TPAILVGTPGR 129

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D ++   +        +L   DE    G  Q +           +L  A     TL+ 
Sbjct: 130 ILDHLKRKTVKLDKIKTVVLDEADEMLDMGFIQDI---------ESILDFAQNREHTLLF 180

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I +I EK   ++P    I       ++I++  V   E +K   +C  I+ +  
Sbjct: 181 SATMPKPILRIGEKFM-KEPEIVQIKSKELTADLIDQYFVRAKEAEKFDIMCRLIDVQAP 239

Query: 497 --ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L     +     A IHG +S   + SV+  FKNG   +L+AT V 
Sbjct: 240 DLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILVATDVA 299

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+   + +   +      + +H++ GR GR  +    +    P       T  ++ 
Sbjct: 300 ARGLDISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGKNGISVTFVTPNEIGYMRTIENLT 358

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
           K           D   + +   L I    +   L A    +        ++A  +L   
Sbjct: 359 KKKMSPLRPPTNDQALQGQ---LAIAHKQIEDLLKADLTKYT-------EEASELLDNY 407


>gi|114771836|ref|ZP_01449229.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium HTCC2255]
 gi|114547652|gb|EAU50543.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium HTCC2255]
          Length = 461

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 70/368 (19%), Positives = 140/368 (38%), Gaps = 44/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+          +     G+GKT    + M   +  G       +++
Sbjct: 24  TPTPIQSEAIPHALEGRDV------LGIAQTGTGKTAGFTLPMIHKLARGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E  ++Y +  ++ + ++ G +    + + ++R       ++I T   
Sbjct: 78  VLAPTRELAAQVAENFEQYAKYVKLDMALLIGGVSFKDQDRLIDR----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     ++VDE  R      +   ++       +   TP   +TL  ++
Sbjct: 134 LLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIER-------IFKLTPFTRQTLFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER------LKVVLSEGKKAYWICPQIE 493
               +I++IT++      +  V       + + +           L   KK   +   I+
Sbjct: 187 TMAPEINRITQEFLQNPKLVEVARQATTSENITQNVICFKAENRKLEAKKKRDLLRTIIK 246

Query: 494 EKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++ E         N +  V+      +    S+  IHG +    +  V+  FKN    LL
Sbjct: 247 DEGEKLTNGIVFCNRKVDVDIVMKSLKKHGHSVGAIHGDLDQRYRMEVLAGFKNNDITLL 306

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +A+ V   G+D+   S +   +        +H++ GR GR        +L  P   K+  
Sbjct: 307 VASDVAARGLDIPAVSHVFNFDVPIHAEDYVHRI-GRTGRAGRKGWAFMLCLPHEIKHLD 365

Query: 606 TRLSVLKN 613
               ++K 
Sbjct: 366 KIEELVKQ 373


>gi|197099360|ref|NP_001124720.1| ATP-dependent RNA helicase DDX3Y [Pongo abelii]
 gi|73620771|sp|Q5RF43|DDX3Y_PONAB RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|55725665|emb|CAH89614.1| hypothetical protein [Pongo abelii]
          Length = 658

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 143/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I      K +   +     GSGKT   L+ + + +   G          
Sbjct: 201 PTPVQKHAIPII------KGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKE 254

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 255 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 313

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 314 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 370

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  +D+    
Sbjct: 371 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDK-RSF 428

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L    +       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 429 LLDLLGATGRDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 482

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 483 HQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 541

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 542 FFNEKNMNITKDLLDLLVE 560


>gi|310644788|ref|YP_003949547.1| dead/deah box helicase domain protein [Paenibacillus polymyxa SC2]
 gi|309249739|gb|ADO59306.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
          Length = 481

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 250 EIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
           +         +   + L ++ +  PT+ Q   I   L+      +   + +   GSGKT 
Sbjct: 3   QKHFADYPLSEEIVRALNSLGYETPTEIQTEVIPVALE------KKDLVAKSQTGSGKTA 56

Query: 309 VALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
              I +   V   E   QA+I+ P   LA Q  E I    +  +I    + G  P   ++
Sbjct: 57  AYGIPLCELVDWNENKPQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQK 116

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGV-QQRLKLTQ 416
             L++    + H+ +GT     D I+   L L  +        DE    G  +Q   + Q
Sbjct: 117 AELKQ----RTHVAVGTPGRVLDHIERGTLSLNRIAYLVIDEADEMLNMGFIEQVQSIIQ 172

Query: 417 KATAPHVLLMTATPIPRTLV---LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                 V ++ +   P  +       + D    +I         I   +I +   D++  
Sbjct: 173 ALPNDRVTMLFSATFPEDVAKLSRKYMNDPVEIEIKATGVTTATIDHSLIQVREADKLAL 232

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
              +++ E   +  I  + +E  ++ FR++ +               IHG M   ++  V
Sbjct: 233 LQDLLVVENPDSCIIFCRTQEHVDTLFRALAD--------LEYPCDRIHGGMEQDERFEV 284

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M++F+ G  + LIAT V   GID+ + + +I  +      + +H+  GR GR  +    I
Sbjct: 285 MNAFRRGQFRYLIATDVAARGIDITNITHVINYDIPLEKESYVHR-TGRTGRAGKTGKAI 343

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLI 620
            L  P  SK      + +     GF I
Sbjct: 344 TLITPKDSKRLADIEAYI-----GFAI 365


>gi|254428186|ref|ZP_05041893.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
 gi|196194355|gb|EDX89314.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
          Length = 457

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 129/346 (37%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQAQAIPAVLSGRDV------MAAAQTGTGKTAGFTLPLLERLRTGTPARNNQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +  Y +N  +   ++ G +    + + L     G   +++ T  
Sbjct: 77  LVLTPTRELAAQVAESVSTYGKNLPLTSSVVFGGVKINPQMQRLR----GGCDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L ++I+DE  R      +   +K      +L    P  + L+ ++
Sbjct: 133 RLLDLYQQNAVKFDHLEVLILDEADRMLDMGFIHDIRK------ILSKLPPKRQNLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I  +  K     P++  I P N   E++ +    + + +K   +   I+E     
Sbjct: 187 TFSPEIRALA-KGLVNDPVEVDISPRNTTTELVTQWIAPVDKKRKPALLTHLIQEHGWFQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    +     E      A IHG  S   +   +  FKNG  + L+AT +   
Sbjct: 246 VLVFSRTKHGANKLAKQLEANGIEAAAIHGNKSQNARTRALADFKNGKVRALVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+     ++  +  +     +H++ GR GR       I L    
Sbjct: 306 GLDIEQLPQVVNVDLPNVPEDYVHRI-GRTGRAGATGQAISLVSAD 350


>gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
 gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
          Length = 547

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 137/370 (37%), Gaps = 43/370 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           + ++ +  P+  Q  AI  +L+          I Q   G+GKT    I +   ++     
Sbjct: 19  IADLGYEQPSPIQAKAIPVVLEGYDV------IGQAQTGTGKTAAFSIPLLEKIDPSDKR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  E ++K  +    +    I G  P   + KAL     G   +II
Sbjct: 73  LQAIVLCPTRELAIQVSEEVRKLAKYLHGVKTLPIYGGQPIDRQIKAL----KGGVQVII 128

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D I    L        ++   DE    G ++ +           +L +     
Sbjct: 129 GTPGRVIDHINRKTLKPSTVKMVVMDEADEMLDMGFREDI---------ETILSSTPQER 179

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +T + ++     I ++T+K   ++P+   ++        I++  +   +  K   +   I
Sbjct: 180 QTSLFSATMPKAILELTQKY-QKEPVHIKVVRKELTVNNIKQFYIETRKSNKLEVLTRLI 238

Query: 493 EEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +           N +   +   S  +        +HG +  + ++ VMD F++GT  +L+
Sbjct: 239 DVYNPKLTVVFTNTKKGADELVSDLQARGYGADSLHGDLKQVQRDIVMDKFRHGTIDILV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   GIDV D   +I           +H++ GR GR                +    
Sbjct: 299 ATDVAARGIDVDDVECVINYELPQDEEYYVHRI-GRTGRAGRDGIAFSFV---FGREMRK 354

Query: 607 RLSVLKNTED 616
              + + T+ 
Sbjct: 355 LKDIERYTKS 364


>gi|167904187|ref|ZP_02491392.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei NCTC
           13177]
          Length = 233

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 102/236 (43%), Gaps = 18/236 (7%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 2   KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 54

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 55  IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 113

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 114 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 172

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFK 248
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +
Sbjct: 173 LDVPPLADAVRMLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERR 228


>gi|308487516|ref|XP_003105953.1| CRE-INF-1 protein [Caenorhabditis remanei]
 gi|308254527|gb|EFO98479.1| CRE-INF-1 protein [Caenorhabditis remanei]
          Length = 402

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 140/376 (37%), Gaps = 34/376 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           +    F  P+  Q+ AI               I Q   G+GKT    +++   ++     
Sbjct: 44  IYGFGFEKPSAIQKRAIVPCTTGKDV------IAQAQSGTGKTATFSVSILQRIDHEDPH 97

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA++MAP   LAQQ  + +    +   + +    G       ++ LE       H+++G
Sbjct: 98  VQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEN----GIHVVVG 153

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPI 431
           T     D I    L        +L   DE    G + ++            V+L++AT  
Sbjct: 154 TPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYDVFRSMPQDVQVVLLSATMP 213

Query: 432 PRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              L +T     +  +I  K      + I+   I + + +   + L          Y + 
Sbjct: 214 SEVLDVTDRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCL-------CDLYNVV 266

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
              +     N R  V++      +   +++ +HG M   +++++M  F++G+ ++LI T 
Sbjct: 267 NVTQAVIFCNTRRKVDQLTEQMTNKQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTD 326

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           ++  GIDV   S++I  +        +H++ GR GR       I       ++      +
Sbjct: 327 ILARGIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTENDARQLKEIET 385

Query: 610 VLKNTEDGFLIAEEDL 625
                 +    +  DL
Sbjct: 386 YYTTQIEEMPESIADL 401


>gi|281347447|gb|EFB23031.1| hypothetical protein PANDA_001323 [Ailuropoda melanoleuca]
          Length = 613

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 154 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 207

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 208 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 266

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 267 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 323

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 324 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 381

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 382 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 435

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 436 HQFRSGKSPILVATAVSARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 494

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 495 FFNERNINITKDLLDLLVE 513


>gi|227937255|gb|ACP43273.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Gorilla gorilla]
          Length = 660

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 143/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I      K +   +     GSGKT   L+ + + +   G          
Sbjct: 201 PTPVQKHAIPII------KGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKE 254

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 255 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 313

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 314 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 370

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  +D+    
Sbjct: 371 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDK-RSF 428

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L    +       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 429 LLDLLGATGRDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 482

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 483 HQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 541

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 542 FFNEKNMNITKDLLDLLVE 560


>gi|228911292|ref|ZP_04075096.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis IBL 200]
 gi|228848310|gb|EEM93160.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis IBL 200]
          Length = 481

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 139/371 (37%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYDHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+   L L  +        DE    G   ++   + +  T    +L +AT  
Sbjct: 129 TPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +I         I+  +  +   +++     V + E   +  I 
Sbjct: 189 EDVEKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVTEEEKLSLLKDVTIIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  +R          +        IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVYRQ--------LKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|33863354|ref|NP_894914.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9313]
 gi|33640803|emb|CAE21258.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9313]
          Length = 635

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 128/345 (37%), Gaps = 39/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q++AI +++           + Q   G+GKT    + +   +   G   Q +++A
Sbjct: 105 QPSPIQKAAIPELMLGRD------LVGQAQTGTGKTAAFALPLIERLHDHGSRPQVLVLA 158

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  + Y   +  + V  + G      +   L+R       +++GT     
Sbjct: 159 PTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQINTLKR----GVDVVVGTPGRLM 214

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++           L+L   DE  R G    ++            +   P  R +VL S
Sbjct: 215 DHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWI----------LEQLPEERQMVLFS 264

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                  +   K    +P +  I   ++   +I +  + L    K   +   +E      
Sbjct: 265 ATMPSEIRRLSKRYLHEPAEITIKSRDQEARLIRQRCITLQNSHKLEALRRVLEAFTGEG 324

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + +        E     +A+++G +    +E  ++  + G+  +L+AT V   
Sbjct: 325 VIIFARTKVITLTVAEALEAAGHDVAVLNGDVPQNQRERTVERLRKGSVNILVATDVAAR 384

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+DV   S++I  +      A +H++ GR GR       IL  +P
Sbjct: 385 GLDVDRISLVINYDIPFDSEAYVHRI-GRTGRAGRSGEAILFVNP 428


>gi|270009742|gb|EFA06190.1| hypothetical protein TcasGA2_TC009039 [Tribolium castaneum]
          Length = 808

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 169/475 (35%), Gaps = 60/475 (12%)

Query: 180 SRLPVLPEWIEK----DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
              P L E  E+    D     +     EA      P   K+F +  P    +  DE+ A
Sbjct: 138 EPPPQLDEPQEEPKIVDWRAVFAKCDELEAEKWAALPPIKKEFYFEHPEVTAMTEDEVEA 197

Query: 236 GQI--ALLLMRKQFKKEIGIPINVEGKIAQKILRNIP----------FS-PTKSQESAIK 282
            ++    +++ + FK E   P+       +      P          F+ P+  Q  A  
Sbjct: 198 FRLESNNIVVERTFKTENSKPVPKPVVTFEHAFHKYPEILEEMKKAGFTRPSPIQSQAWP 257

Query: 283 DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---------GGQAVIMAPIGIL 333
            +L           I     G+GKTL  L+     ++          G   ++MAP   L
Sbjct: 258 VLLSGED------LIGIAQTGTGKTLAFLLPALIHIDGQNIKKSERGGPAVLVMAPTREL 311

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD----- 388
           A Q  + +KKY +   I    I G   +  + K L         I+I T     D     
Sbjct: 312 ALQIDKEVKKY-EYKGITAVCIYGGGNRREQIKVLTD----GVDIVIATPGRLNDLAEAG 366

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++   +  V++DE  R          +K      ++ +  P  +T++ ++     + ++
Sbjct: 367 HLEVKYVTYVVLDEADRMLDMGFEPQIRK------VMYSIRPTRQTVMTSATWPPGVRRL 420

Query: 449 TEKPAGRKPIKTVIIPIN-----RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
            +      PI+  +  ++      + ++IE +     E  + +       +  E      
Sbjct: 421 AQSYM-VDPIQIYVGTLDLAATHTVTQIIEIIPDDDQEKFRTFMNFATNLDPSEKVIAFC 479

Query: 504 --VERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               R + L    T +      IHG     D+E  +    +GT ++LIAT V   G+D+ 
Sbjct: 480 GKKARADELSTELTLAGLQCQTIHGDRDQSDREQALLDIADGTVQILIATDVASRGLDID 539

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           D + +I  +        +H++ GR GR  +    I  +       +   +++L+ 
Sbjct: 540 DITHVINYDFPRNIEEYVHRV-GRTGRAGKSGKSISYFTRGDWAQAKELIAILEE 593


>gi|254498821|ref|ZP_05111531.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
 gi|254351952|gb|EET10777.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
          Length = 418

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 139/374 (37%), Gaps = 40/374 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
            P+  Q  +I  IL+          +     G+GKT   ++ +   +    +A       
Sbjct: 23  EPSPIQAQSIPTILRG------NDLLASAQTGTGKTASFVLPILQRLHNQPRAKSNHTKV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q +E I++Y ++  +   ++ G +  + +   L     G   I++ T  
Sbjct: 77  LILTPTRELAAQVHESIRQYGKHLSLRSAVVFGGVKISPQMMKLR----GGVEILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     +IQ+  +  +++DE  R      +   ++       ++   P  R  +L S
Sbjct: 133 RLMDLYQQRAIQFSDVNTLVLDEADRMLDMGFIHDIKR-------IINLLPKERQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +  +   K    KP++  + P N     +++    + + +K   +   I + K   
Sbjct: 186 ATFSEAIRTLAKGLLNKPVEIDVAPRNTTAIAVKQTVHPVDKNRKHALLSHLIHKNKWGQ 245

Query: 500 -------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                       +    L E    + AI HG  S   +  V+  FK+G   +L+AT +  
Sbjct: 246 TLVFSKTKHGANKLVQQLAEEHIYAAAI-HGNKSQSQRTKVLADFKSGELHILVATDIAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+     ++  +        +H++ GR GR     S I L              ++K
Sbjct: 305 RGIDIDQLPCVVNYDLPQVAEDYVHRI-GRTGRAGASGSAISLVCADEVGQLQAIEKLIK 363

Query: 613 NTEDGFLIAEEDLK 626
              +   I  ED +
Sbjct: 364 RKLERIEI--EDFE 375


>gi|146419877|ref|XP_001485898.1| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 397

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 90/405 (22%), Positives = 159/405 (39%), Gaps = 42/405 (10%)

Query: 230 YDELLAGQIALLLMRKQFKKEIGI-PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
           +D  L  ++    + K+ K       +N++ ++ + I      +P+  Q  AI  I++  
Sbjct: 3   FDRELDEELEFTKLTKKVKIYPTFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGR 62

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYT 345
                   I Q   G+GKT    I + + ++      QA++++P   LAQQ    I+   
Sbjct: 63  DT------IAQAQSGTGKTATFSIGILSLIDTKSKDCQALVLSPTRELAQQIENVIEHLG 116

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LIL 397
               +      G        K L++      HII GT     D I+           L+L
Sbjct: 117 DYMNVRSHACIGGTQVGEDVKKLQQGQ----HIISGTPGRVLDMIKRRNIMPRHVKMLVL 172

Query: 398 VIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK--PA 453
              DE    G ++++    K       V++++AT  P  L +T+    D  KI  K    
Sbjct: 173 DEADELLTKGFKEQIYEIYKTLPAGAQVVVVSATLTPEVLEMTNKFTSDPVKILVKRDDV 232

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLH 511
             K IK   I   + D   + L  +       +A   C           ++ V       
Sbjct: 233 TLKGIKQYYIQCEKEDWKFDTLCDLYDNLTITQAVIFCNT---------KAKVNWLAGQM 283

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                ++A +HG M   D++S+M  F++G+ ++LI+T V   GIDV   S++I  +    
Sbjct: 284 RKSNFTVAAMHGDMKQEDRDSIMKEFRSGSTRVLISTDVWARGIDVQQVSLVINYDLPLD 343

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
               +H++ GR GR     + I L    L+      L +L++   
Sbjct: 344 KENYVHRI-GRSGRFGRKGTAINL----LTSQDKDELKLLQHYYS 383


>gi|157964817|ref|YP_001499641.1| ATP-dependent RNA helicase RhlE [Rickettsia massiliae MTU5]
 gi|157844593|gb|ABV85094.1| ATP-dependent RNA helicase RhlE [Rickettsia massiliae MTU5]
          Length = 415

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 137/342 (40%), Gaps = 35/342 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQAVIMAPI 330
            PT+ Q+ +I   +           +     GSGKTL  L+ +  + ++    A+I+ P 
Sbjct: 26  EPTEIQKQSIPVAMAG------SDILASSQTGSGKTLAYLLPLIDSFIKNKTTALILVPT 79

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q +  + K T + +I   ++ G  P   +   L++       +IIGT     D +
Sbjct: 80  RELATQIHSTLNKVTISYKINSAVLIGGEPMPKQFMQLKK----NPKVIIGTPGRIIDHL 135

Query: 391 QYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               L        +L  +D     G++++L+   K               + L+ ++   
Sbjct: 136 NRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEK---------RQVLMFSATMP 186

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----E 497
             I  +++K     P++  +   N+    I++  + +S+ +K   +  Q+  ++      
Sbjct: 187 KHIIAVSQKYLN-NPVRITVGATNKAAAEIKQESMHVSDKEKFSELTKQLGNREGSVIIF 245

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++   + ++   +   IHG +S   +E V+ SF+    ++++AT V   G+D+
Sbjct: 246 VKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDI 305

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
                +I  +        LH++ GR GR       +    P 
Sbjct: 306 PHTQHVINYDLPMCPEDYLHRI-GRTGRAGATGYALSFISPD 346


>gi|332296357|ref|YP_004438280.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
           DSM 14796]
 gi|332179460|gb|AEE15149.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
           DSM 14796]
          Length = 531

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 79/363 (21%), Positives = 139/363 (38%), Gaps = 33/363 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--G 322
           L+ + F  P++ Q+  I  ++Q          I Q   G+GKT    I +          
Sbjct: 20  LKEMGFEEPSEIQKQTIPIVMQGFDV------IGQAQTGTGKTAAFGIPIVEKTTKDRVP 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q++++ P   LA Q  E I K ++   + V  I G      + KAL       A +IIGT
Sbjct: 74  QSLVLTPTRELAIQVAEEISKISKYRGLRVVPIYGGQSIERQIKAL----KNGAQVIIGT 129

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK---ATAPHVLLMTATPI 431
                D I+   L        +L   DE    G  + ++   K         LL +AT  
Sbjct: 130 PGRLIDHIKRGTLFLSKISILVLDEADEMLDMGFIEDIETIMKSIKNENIQTLLFSATMP 189

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              + LT     +   ++          T        D++    +++ +E      I  +
Sbjct: 190 DPIMALTKKYMKNPKVVSISKEQLTVPLTDQFYCEAKDKLEALCRILETEDMDKTIIFCR 249

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +       + V E   SL+    S+  + HG ++   ++ VM SF+    ++L+AT V 
Sbjct: 250 TK-------KGVDELVASLNTRGYSAEGL-HGDLTQAQRDKVMKSFRERNLEVLVATDVA 301

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D S +I  +      + +H++ GR GR  +    I    P   +       V+
Sbjct: 302 ARGLDISDVSHVINFDIPQDPESYVHRI-GRTGRAGKSGIAITFITPREFRQLRLIEKVI 360

Query: 612 KNT 614
           + T
Sbjct: 361 RTT 363


>gi|310790963|gb|EFQ26496.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 1112

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 143/393 (36%), Gaps = 47/393 (11%)

Query: 265 ILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           +L ++ F  PT  Q  A+  I+           +     GSGKTL  L+ M   +     
Sbjct: 503 VLADMGFDKPTSIQMQALPVIMSGRDV------VGVAKTGSGKTLAFLLPMFRHIMDQPP 556

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +IM P   LA Q +   K + +   +      G  P   +   L+R     
Sbjct: 557 LKDTDGPIGLIMTPTRELAVQIHRDCKPFLKAMGLRSVCAYGGAPIREQIAELKR----G 612

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A I++ T     D +           ++   ++DE  R           K  A       
Sbjct: 613 AEIVVCTPGRMIDLLAANQGRVTNLRRVTYAVLDEADRMFDMGFEPQVMKIFANIR---- 668

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++     I  +T+K   + P++  +   + +   I ++  ++ E +K Y 
Sbjct: 669 --PDRQTILFSATMPRIIDSLTKK-VLKSPVEITVGGRSVVASDITQIVEIVPEDQKFYH 725

Query: 488 ICPQIEEKKESNFRSV-------VERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
           +   + E  + +  +         E+ + L +   +       IHG    +D++S +  F
Sbjct: 726 LLGLLGELYDKDEDARSLVFVERQEKADDLLKELMTKGYPCMSIHGGKDQVDRDSTISDF 785

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   +LIAT+V   G+DV    +++  +        +H+  GR GR     + +    
Sbjct: 786 KKGIVPILIATSVAARGLDVKQLKLVVNYDCPSHSEDYVHR-CGRTGRAGNKGTAVTYIT 844

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
                 +      L+    G  + E   + RK 
Sbjct: 845 EEQESCASAVAKALEQ--SGQPVPERLEEMRKA 875


>gi|307308978|ref|ZP_07588661.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
 gi|306900612|gb|EFN31225.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 504

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 132/373 (35%), Gaps = 49/373 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  AI  +L+D         I     G+GKT    + M   + A G+        
Sbjct: 24  KPTPIQAQAIPLVLKDHD------LIGLAQTGTGKTAAFGLPMIEKLVADGRRPDPRNIR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   L  Q    +K + + + + + ++ G +    + + L R       I++ T 
Sbjct: 78  ALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQLAR----GVDILVATP 133

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +            L+L   D+    G    L+   K    +          +TL
Sbjct: 134 GRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKN---------RQTL 184

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+++  +     P+K  + P  +  + +E+    +        I  Q    
Sbjct: 185 LFSATMPKLIAELAGEYLT-DPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTA 243

Query: 496 KES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   E+     +H     A IHG  S   +E  + +F++G  ++L+AT
Sbjct: 244 NPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+   + +   +      A +H++ GR  R       I    P   +      
Sbjct: 304 DVAARGIDIPGVTHVYNYDLPEVPDAYVHRI-GRTARNGRDGIAIAFCAPDEIRLLRDIE 362

Query: 609 SVLKNTEDGFLIA 621
            ++     G  IA
Sbjct: 363 KLM-----GIQIA 370


>gi|78779495|ref|YP_397607.1| DEAD/DEAH box helicase-like [Prochlorococcus marinus str. MIT 9312]
 gi|78712994|gb|ABB50171.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str. MIT
           9312]
          Length = 593

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 133/345 (38%), Gaps = 43/345 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMA 328
           PT  Q++AI +++           + Q   G+GKT    + +   +        + ++M 
Sbjct: 74  PTPIQKAAIPELMLGRD------LLGQAQTGTGKTAAFALPLIEKLADNKELNAKVLVMT 127

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  K Y+ ++T      I G     ++  AL+R    +  +++GT     
Sbjct: 128 PTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALKR----KVDVVVGTPGRIM 183

Query: 388 DSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVL 437
           D I+           L+L   DE    G  + ++    Q      ++L +AT        
Sbjct: 184 DHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQMVLFSAT-------- 235

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                 +I  I +K     P + +I  + +  ++I +  + +    K   +   +E   E
Sbjct: 236 ---MPNEIRNIAKKYLN-DPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNNE 291

Query: 498 SNFRSVVERF-----NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                V  +          E+   S+A+++G +    +E+ +D  K G   +L+AT V  
Sbjct: 292 GVIIFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVAA 351

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            G+DV    +++  +         H++ GR GR       IL  +
Sbjct: 352 RGLDVERIKLVVNYDFPFDKETYTHRI-GRTGRAGRSGEAILFVN 395


>gi|322700629|gb|EFY92383.1| ATP-dependent RNA helicase dbp-2 [Metarhizium acridum CQMa 102]
          Length = 552

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 141/371 (38%), Gaps = 44/371 (11%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------ 320
           +  P +PT  Q       L           +   + GSGKTL   +     + A      
Sbjct: 154 QGFP-APTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAP 206

Query: 321 --GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G   +++AP   LA Q  + I K+ ++++I    + G +P+  + + L R       +
Sbjct: 207 GDGPIVLVLAPTRELAVQIQQEITKFGRSSRIRNTCVYGGVPKGPQIRDLSR----GVEV 262

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTA 428
            I T     D ++  K        L+L   D     G   Q R  + Q       L+ +A
Sbjct: 263 CIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMYSA 322

Query: 429 TPIPRTLVLTSLGDIDISKI----TEKPAGR--KPIKTVIIPINRIDEVIERLKVVLSEG 482
           T       + +    D  ++     +  A      I  V+  + + D +I+ L+ V+   
Sbjct: 323 TWPKEVRAMAADFQTDFIQVNIGSMDLSANHRITQIVEVVSDMEKRDRMIKHLEQVMENK 382

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +    I            R   +    L +    +++I HG     +++ V+D FK G  
Sbjct: 383 ENKILIFV-------GTKRVADDITRFLRQDGWPALSI-HGDKQQNERDWVLDQFKTGKS 434

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +++AT V   GIDV + + ++  +  +     +H++ GR GR     + I  +     K
Sbjct: 435 PIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRI-GRTGRAGAKGTAITFFTTDNQK 493

Query: 603 NSYTRLSVLKN 613
            +   ++VL+ 
Sbjct: 494 QARELVNVLQE 504


>gi|254706857|ref|ZP_05168685.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis
           M163/99/10]
 gi|254710035|ref|ZP_05171846.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis B2/94]
 gi|254714037|ref|ZP_05175848.1| ATP-dependent RNA helicase DDX17 [Brucella ceti M644/93/1]
 gi|254716905|ref|ZP_05178716.1| ATP-dependent RNA helicase DDX17 [Brucella ceti M13/05/1]
 gi|256031530|ref|ZP_05445144.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis M292/94/1]
 gi|261218712|ref|ZP_05932993.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261314321|ref|ZP_05953518.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261317582|ref|ZP_05956779.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261321790|ref|ZP_05960987.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|265988616|ref|ZP_06101173.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|260923801|gb|EEX90369.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261294480|gb|EEX97976.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261296805|gb|EEY00302.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261303347|gb|EEY06844.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|264660813|gb|EEZ31074.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
          Length = 482

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 138/365 (37%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE------RKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTL 435
             D  +  KL+L  V     DE  R      +   ++           L  +AT  P   
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEIT 193

Query: 436 VLTSLGDIDISKI-------TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            LT        +I       T K   ++ +K+     ++   + + ++      K A   
Sbjct: 194 KLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEGDSLKNAIIF 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         + V E F SL  H       +HG M    + +++ SFK+G  +LL+A+
Sbjct: 254 CNR--------KKDVSELFRSLTRH-EFDAGALHGDMDQRARMAMLSSFKDGKLRLLVAS 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S +   +        +H++ GR GR         +     +K      
Sbjct: 305 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 609 SVLKN 613
           S++  
Sbjct: 364 SMIGE 368


>gi|167920401|ref|ZP_02507492.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei BCC215]
          Length = 232

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 102/236 (43%), Gaps = 18/236 (7%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+         G +   + 
Sbjct: 2   KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NE 54

Query: 82  FQLQKRRPYKILLNDGTG-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D  G E+ L F       +K +   G+++ V G ++     + +VH
Sbjct: 55  IAYRPRRQLLVKLRDDDGAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVH 113

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P     +        +  VY    G+S    +K I  AL+R P LPE +  ++    LQ 
Sbjct: 114 PTVKTVDEDAPLPQALTPVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQP 172

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDELLAGQIALLLMRKQFK 248
              P +A+A  ++H+P    D     + T PA  R+ +DELLA Q++L    ++ +
Sbjct: 173 LDVPPLADAVRMLHHPGVGADETALIDGTHPAWTRIKFDELLAQQLSLKRAHEERR 228


>gi|294498466|ref|YP_003562166.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294348403|gb|ADE68732.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 466

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 133/350 (38%), Gaps = 23/350 (6%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  +K + N+ F   T  Q  AI   +           I Q   G+GKT    I +   
Sbjct: 10  SKDIEKAVHNLGFEEATPIQAEAIPIAMAGKD------LIGQAQTGTGKTTAFGIPLIER 63

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE    G Q +++AP   LA Q  E + +  Q   +    I G      + KAL      
Sbjct: 64  VELGEEGIQGIVLAPTRELAIQVAEELNRIGQVKGVKTLPIYGGQDINRQIKAL----KN 119

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + HII  T    +D ++   + L  +         + L +        +L   ++P  +T
Sbjct: 120 RPHIISATPGRLKDHMKRRTIRLNHIRTAVLDEADEMLNMGFIEDIQSILGGISSP-HQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     +  + +K     P    +       + IE+  + + E +K   +C  ++ 
Sbjct: 179 LLFSATMSKQVQSLAQKFMN-DPELVKVKAKELTVKNIEQQYMEIPENRKFDVLCNLVDL 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +       F    +R + L E           IHG ++   +  V+  FKN T ++++AT
Sbjct: 238 QVPDLAIVFGRTKKRVDELAEGLKKRGYAAEGIHGDLTQSKRADVIRQFKNHTIEIMVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   S +   +      + +H++ GR GR       +    P
Sbjct: 298 DVAARGLDITGVSHVYNFDIPQDPESYVHRI-GRTGRAGTKGLAVTFITP 346


>gi|294497056|ref|YP_003560756.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294346993|gb|ADE67322.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 503

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 89/444 (20%), Positives = 162/444 (36%), Gaps = 46/444 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   K +  + F   T  Q   I   L+          I Q   G+GKT    I +   
Sbjct: 10  SQQLNKAVSKMGFEEATPIQSETIPLALEGHD------LIGQAQTGTGKTAAFGIPLIEK 63

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           V+      Q +I+AP   LA Q  E + K  Q  ++ V  I G    + + +AL++    
Sbjct: 64  VDVNVDAIQGLIIAPTRELAVQVSEELYKIGQTKRVRVLSIYGGQDISRQIRALKK---- 119

Query: 375 QAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             HII+GT     D I    L        IL   DE    G  + ++        +    
Sbjct: 120 HPHIIVGTPGRMLDHINRRTLRLQDVHTVILDEADEMLNMGFIEDIEKILSNVPEN---- 175

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +TL+ ++     I +I EK      +  V      +  + +   + + E +K  
Sbjct: 176 -----HQTLLFSATMPTPIRRIAEKFMNEPKVVKVKAKEVTMPNITQY-YLEVQEKRKFD 229

Query: 487 WICPQIEEKK---ESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNG 540
            +   ++ +       F     R + L E       S   IHG ++   + SV+  FK G
Sbjct: 230 ILTRLLDMQSPELAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEG 289

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
           +  +L+AT V   G+D+   + +   +      + +H++ GR GR  ++ + +    P  
Sbjct: 290 SIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKMGAAMTFVTPRE 348

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK--QSGMPKFLIAQPELHDSLLEI 658
           +   +      K   +       D     +  I   K  +S     L    +L + LLE 
Sbjct: 349 TGQLHNIERTTKRKMERLTPPTLDEAMEGQQRIAADKLTESVTQGNLSYYKQLAEELLEE 408

Query: 659 -----ARKDAKHILTQDPDLTSVR 677
                    A  + T++P+ + ++
Sbjct: 409 HDSVSLVAAAIKLFTKEPNESPIQ 432


>gi|47097038|ref|ZP_00234610.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254828606|ref|ZP_05233293.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N3-165]
 gi|254898593|ref|ZP_05258517.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J0161]
 gi|254911917|ref|ZP_05261929.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J2818]
 gi|254936243|ref|ZP_05267940.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes F6900]
 gi|47014573|gb|EAL05534.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601004|gb|EEW14329.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N3-165]
 gi|258608833|gb|EEW21441.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes F6900]
 gi|293589878|gb|EFF98212.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J2818]
          Length = 470

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 137/370 (37%), Gaps = 38/370 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  ++ +  + ++  T  Q++ I   L           + +   GSGKT    I +A  
Sbjct: 7   SEEIKRAINELGYTEATPVQKAVIPVALTGED------IVAKSQTGSGKTAAFAIPIAEQ 60

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+I+ P   LA Q         +  ++    I G  P A ++  L +    
Sbjct: 61  VEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKN-- 118

Query: 375 QAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
             HI++GT     D I+           L+L  VDE    G   ++   L++       L
Sbjct: 119 --HIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNL 176

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             +AT       L      D   I        PI  V I  +  ++ ++   V+++E   
Sbjct: 177 FFSATMPEEMQGLIKRYQDDPMVIEMASEKTNPILHVEIQTDNKEKTLKD--VLITENPD 234

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +  I    + +            + L +      + IHG +   D+   MD FK+G  + 
Sbjct: 235 SAIIFCNTKNQ-----------VDELTDLLDVKASKIHGGLRQEDRFRAMDDFKSGKSRF 283

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   GIDV + S++I  +        +H++ GR GR  +    I       +   
Sbjct: 284 LIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRI-GRTGRAGKSGKAISFVKTNENPLL 342

Query: 605 YTRLSVLKNT 614
                +L  T
Sbjct: 343 RDIEEMLDVT 352


>gi|294892441|ref|XP_002774065.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239879269|gb|EER05881.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 674

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 70/401 (17%), Positives = 135/401 (33%), Gaps = 54/401 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L        M+ I   + GSGKTL  +I     + A        G  
Sbjct: 234 KPTPIQVQGWPVAL----SGRDMVGI--AETGSGKTLAFMIPAVIHINAQPYLQKGDGPI 287

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA Q      ++ ++++I    + G   +  + +AL+        I I T 
Sbjct: 288 VLILAPTRELALQIKAECDRFGRSSRITNTCVYGGTQRGPQARALQN----GVEICIATP 343

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       ++  +++DE  R                  ++    P  +TL+ +
Sbjct: 344 GRLIDFLESGTTNLKRVTYLVMDEADRMLDMGFE------PQVRKIVSQIRPDRQTLMWS 397

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +    ++  +       +P+   +         I++   V+    K   +   ++     
Sbjct: 398 ATWPKEVQHLARDICNEEPVLVTVGRSGHACHNIQQYVEVVENNVKPERLLALMQAASAA 457

Query: 498 ------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
                        + +   +    L          IHG     +++ V++ FK G   ++
Sbjct: 458 TGGGWTAKTLIFCDTKRGADDITRLLRRDGWPALSIHGDKKQSERDWVLNQFKTGRSAIM 517

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           IAT V   G+DV D   +I  +        +H++ GR GR          + P   K + 
Sbjct: 518 IATDVASRGLDVKDVKYVINYDFPGTIEDYVHRI-GRTGRAGASGVAYSFFSPDKGKLAR 576

Query: 606 TRLSVLKNTEDGFLIAEEDL-----------KQRKEGEILG 635
             ++ L+        A E +           K R +G   G
Sbjct: 577 QLVNCLREANQSVPEALETIAFANDRSNSGGKGRGKGNYGG 617


>gi|45659052|ref|YP_003138.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45602298|gb|AAS71775.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 521

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 75/385 (19%), Positives = 136/385 (35%), Gaps = 41/385 (10%)

Query: 262 AQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE- 319
            Q  +  + F   +  Q  AI  IL+          I     G+GKT    I     +E 
Sbjct: 20  IQNAILEMGFEEASPIQSEAIPVILKGKD------IIGHAQTGTGKTAAFAIPTIELLEV 73

Query: 320 --AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQA 376
                QA+I+ P   L  Q  E  +K  +      V  I G      + +AL +      
Sbjct: 74  ESKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRK----NP 129

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            I+I T     D ++           ++L   DE    G ++ ++   K T         
Sbjct: 130 QIVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPAD------ 183

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +T++ ++    D+  + +K     P    +         IE++   + E  K   +
Sbjct: 184 ---RQTIMFSATMTDDVLTLMKKFQNH-PQIIDVTHQKLSAPKIEQIYYEIQENAKGEAL 239

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              IE +         N ++ V+    L +        +HG ++   ++ VM  F+ G+ 
Sbjct: 240 ARLIEYRNVKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMSGFRKGSI 299

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+AT V   GIDV +   +   +    G   +H++ GR GR  +              
Sbjct: 300 EILVATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRI-GRTGRAGKKGIAFSFIVGKQIY 358

Query: 603 NSYTRLSVLK-NTEDGFLIAEEDLK 626
           N      +     E G +   +DL+
Sbjct: 359 NLKKIERINGIKIEAGKIPTLDDLE 383


>gi|322384584|ref|ZP_08058264.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150639|gb|EFX44116.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 418

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 141/370 (38%), Gaps = 33/370 (8%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           ++V+    + + R     PT  QE AI  +L           I Q   GSGKTL  ++  
Sbjct: 8   LHVDVSYVETLTRMGITEPTPIQEEAIPALLSGQDV------IAQSATGSGKTLAYVLPA 61

Query: 315 AAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
              ++      Q +I+ P   L  Q  +  +K T+   I ++ + G    + +   L+  
Sbjct: 62  LHNIDPDDKHVQVMIIVPTRELGMQIVQVAQKLTEGGSIRIQPLIGGASLSRQVDKLKE- 120

Query: 372 AHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAP 421
              + H+++GT    ++ IQ  KL        I+  VD+    G  Q +   L     + 
Sbjct: 121 ---RPHMVVGTPGRIKELIQMRKLTVHFVKTVIVDEVDQVFELGNMQEVGAVLKTMLKSK 177

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            V   +AT  PR L        D  K+  K          ++     D+V    ++V   
Sbjct: 178 QVAFFSATMPPRILETAERWMQDPIKVQIKLKQPAHEHLYVV-CEERDKVDMLRRLVRHY 236

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
             +A  +         ++   + E    L  +   SIA ++G     ++  VM  F+N  
Sbjct: 237 NPRAAIVFI-------NDTDDIGEVLAKLQ-YVGLSIAALYGDSGKQERAKVMQDFRNNK 288

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            +LL+AT V   G+D+   S +I  +        +H++ GR GR     + I +  P  +
Sbjct: 289 FQLLLATDVAARGLDIEGVSHVINLDPPLDADHYVHRI-GRTGRMGRKGTAISIVTPKQT 347

Query: 602 KNSYTRLSVL 611
                    L
Sbjct: 348 FIMEKFSQSL 357


>gi|310789728|gb|EFQ25261.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 551

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 142/371 (38%), Gaps = 44/371 (11%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------ 320
           +  P +PT  Q       L           +   + GSGKTL   +     + A      
Sbjct: 146 QGFP-APTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAP 198

Query: 321 --GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G   +I+AP   LA Q  + I K+ ++++I    + G +P+  + + L R       +
Sbjct: 199 GDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDLSR----GVEV 254

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTA 428
            I T     D ++  K        L+L   D     G   Q R  + Q       L+ +A
Sbjct: 255 CIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSA 314

Query: 429 TPIPRTLVLTSLGDIDISKIT----EKPAGR--KPIKTVIIPINRIDEVIERLKVVLSEG 482
           T       L S    D  ++     E  A      +  V+    + D +I+ L+ ++   
Sbjct: 315 TWPKEVRALASDFLTDFIQVNIGSLELAANHRITQVVEVVNESEKRDRMIKHLEKMMDNK 374

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +    I            R   E    L +    +++I HG     +++ V+D FK G  
Sbjct: 375 ENKVLIFV-------GTKRVADEITRFLRQDGWPALSI-HGDKQQNERDWVLDQFKTGKS 426

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +++AT V   GIDV + + ++  +  +     +H++ GR GR   + + +  +    SK
Sbjct: 427 PIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRI-GRTGRAGAMGTAVTFFTTDNSK 485

Query: 603 NSYTRLSVLKN 613
            +   ++VL+ 
Sbjct: 486 QARDLVNVLRE 496


>gi|258516456|ref|YP_003192678.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780161|gb|ACV64055.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 446

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 76/346 (21%), Positives = 130/346 (37%), Gaps = 42/346 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  Q  AI  ++           + Q   G+GKTL  L+ +   +E      Q++I+ 
Sbjct: 33  EPTPIQVQAIPVLMTGKD------LLAQSQTGTGKTLAFLLPVLEKIEVNKPQVQSLIIT 86

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q     K       I +  + G      + K L     G  H++IGT     D
Sbjct: 87  PTRELALQITGEAKNLGDKLGINILSVYGGQDVERQIKKL----KGHIHMVIGTPGRLLD 142

Query: 389 SIQYY--------KLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            I+          KL+L   D+    G        + +       +L +AT  PR   L 
Sbjct: 143 HIRRKTISLSGVSKLVLDEADQMLHMGFLEDVEEIIRKSPVKKQTMLFSATLPPRIRALA 202

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-- 496
           +                KP    I     I + I+++ + L E +K   +C  I+E +  
Sbjct: 203 ARYMR------------KPADIRIQSRQVILDKIKQIVIELEEKEKLTQLCRLIDENQPY 250

Query: 497 -ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F    +R + L             +HG +S   ++ VM  F +   +LL+AT +  
Sbjct: 251 LAIIFCHTRQRASELAAALIQRGYAADELHGDLSQAKRQQVMKRFSSARLQLLVATDIAA 310

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G+D+   + +   +  H+  + +H++ GR GR  E  + +    P
Sbjct: 311 RGLDIEGVTHVYSYDISHYLESYIHRI-GRTGRAGESGTAVTFVLP 355


>gi|189242416|ref|XP_001811064.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
          Length = 1142

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 93/435 (21%), Positives = 159/435 (36%), Gaps = 44/435 (10%)

Query: 225 RERLAYDELLAGQIALLLMRKQFKKEIGIPI---NVEGKIAQKILRNIPFSPTKSQESAI 281
           + R   D     ++  +++R        +     N    I Q IL+     PT  Q    
Sbjct: 522 KNRATQDVDSFREVKDIIVRGNDVPSPNLCFDEGNFPEYIMQVILKQGFAEPTAIQSQGW 581

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGIL 333
             +L        ++ I Q   GSGKTL  ++     +          G  A+I+AP   L
Sbjct: 582 PVVL----SGRDLVGIAQ--TGSGKTLAYMLPAVVHINNQQRPQRGEGPVALILAPTREL 635

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQ  +   ++   T +    I G  P+  + + LER       I+I T     D ++  
Sbjct: 636 AQQIQKVAHEFGSTTMVRNTCIFGGSPKGPQARDLER----GVEIVIATPGRLIDFLEKG 691

Query: 394 K--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT--LVLTSLG 441
                    L+L   D     G   Q R  + Q      VL+ +AT   +   L    L 
Sbjct: 692 TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQVLMWSATWPKQVQALAEEFLV 751

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESN 499
           D     I             I+ +    E  E+L  +L E        I   +E KK+ +
Sbjct: 752 DYIQVNIGGLSLAANHNIKQIVEVCEESEKEEKLCKLLKEIGSDSCNKIIVFVETKKKVD 811

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +       +     ++I+I HG  S  +++ V+  F+ G   +L+AT V   G+DV D
Sbjct: 812 DITKC-----IRREGYAAISI-HGDKSQPERDYVLSEFRTGKSSILVATDVAARGLDVED 865

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
              +I  +  +     +H++ GR GR ++  +    +     + +   ++VL+       
Sbjct: 866 VKYVINFDYPNSSEDYVHRI-GRTGRCQQAGTAYAFFTSNNQRQAKDLIAVLEEAGQNVS 924

Query: 620 IAEEDLKQ--RKEGE 632
               DL Q  R    
Sbjct: 925 AELRDLAQNSRGSQN 939


>gi|331005215|ref|ZP_08328608.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
 gi|330420958|gb|EGG95231.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
          Length = 464

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 135/361 (37%), Gaps = 36/361 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L+          +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQAKAIPVVLEGRDV------MAAAQTGTGKTAGFTLPLLEILSKGQPARANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y ++ ++   ++ G +    +   L     G   I+I T  
Sbjct: 77  LVLTPTRELAAQVAESVETYGKHLKLRSAVVFGGVKINPQMMKLR----GGVDILIATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++ + KL ++I+DE  R      +   +K       ++ A P  R  ++ S
Sbjct: 133 RLLDLHQQNAMSFNKLEILILDEADRMLDMGFINDIRK-------ILKALPEKRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K    KPI+  + P N     + +    + + +K   +   I + K   
Sbjct: 186 ATFSDDIRDLAKTIVNKPIEISVTPKNSTATTVTQWIHPVDKKQKPSLLVELIYQHKWEQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    +  +  E  +   A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANKLATFLEKHSIKAAAIHGNKSQGARTRALADFKAGKVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++  +  +     +H++ GR GR       + L      +       +++ 
Sbjct: 306 GLDIEQLPQVVNIDLPNVAEDYVHRI-GRTGRAGATGQAVSLVSADEIQQLQDIERLIQK 364

Query: 614 T 614
            
Sbjct: 365 L 365


>gi|167622568|ref|YP_001672862.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167352590|gb|ABZ75203.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 625

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 137/371 (36%), Gaps = 31/371 (8%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  PT  Q ++I+ ++ +         + Q   G+GKT    + +  +++     
Sbjct: 21  LDDLGYEKPTPIQAASIEPLMANKD------ILGQAQTGTGKTGAFALPLLNSIDPNTNA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    Y +    + V  I G      +  AL R       II+
Sbjct: 75  PQILVLAPTRELAVQVAEAFASYAKYMKGLHVLPIYGGQSMQQQLNALRR----GPQIIV 130

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT     D ++   L L  +        +    L          ++  TP  R L L S 
Sbjct: 131 GTPGRVMDHMRRGTLKLDTLKAMVL--DEADEMLKMGFIDDIEWILEHTPKTRQLALFSA 188

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
              +  K         P+   I       E IE+  V +S+  K   +   +E +K    
Sbjct: 189 TMPEQIKRVANKYLDNPVHVKIAATTSTVETIEQRFVQVSQHNKLEALVRVLEVEKTEGI 248

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                   S VE    L     +S + +HG M+   +E  +D  K G   ++IAT V   
Sbjct: 249 IIFVRTRNSCVELAEKLEARGYAS-SPLHGDMNQQARERAIDQLKRGQLDIIIATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV     ++  +  +   A +H++ GR GR       IL       +      ++ + 
Sbjct: 308 GLDVERIGHVVNYDIPYDTEAYVHRI-GRTGRAGRTGMAILFVTH---REMRMLRTIERA 363

Query: 614 TEDGFLIAEED 624
           T     IA  D
Sbjct: 364 TNS--RIAPMD 372


>gi|67920440|ref|ZP_00513960.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Crocosphaera watsonii WH 8501]
 gi|67857924|gb|EAM53163.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Crocosphaera watsonii WH 8501]
          Length = 480

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 77/366 (21%), Positives = 140/366 (38%), Gaps = 38/366 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L+ + F  PT+ QE AI  IL+          + Q   G+GKT    + +   ++     
Sbjct: 18  LQRLGFESPTEIQEKAIPLILE------SNDILGQSQTGTGKTAAYSLPILEQIDTKNPN 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +I+ P   LAQQ  E +K ++   ++ +  + G      + ++LER       I++G
Sbjct: 72  VQTLILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIRSLER----GVQIVVG 127

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D ++  KL+L  +        DE    G    +   L +     +    +AT  
Sbjct: 128 TPGRVIDLLERKKLVLDCLRWAVLDEADEMLSMGFIDDVKTILRKTPETRNTACFSATMP 187

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYW 487
              R LV   L       +  K A    I   +  +P         +  + + + + A  
Sbjct: 188 REIRDLVNQFLKSPVTVSVERKQAAPTHIDQHLYYVPRGWSKRKALQPILEMEDPESAII 247

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                +   E   R          +    S+   HG +S   +E ++  F++G  KL++A
Sbjct: 248 FVRTKQTASELTTR---------LQEIGHSVDEYHGNLSQSQRERLVYRFRDGKIKLVVA 298

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+DV + S +I  +        +H++ GR GR  +  + I L  P   +     
Sbjct: 299 TDIAARGLDVENLSHVINYDLPDNSETYIHRI-GRTGRAGKTGTAISLIEPVDRRMVRQI 357

Query: 608 LSVLKN 613
              L+ 
Sbjct: 358 ERKLRQ 363


>gi|332025289|gb|EGI65460.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
          Length = 706

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 139/376 (36%), Gaps = 39/376 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L        ++ I Q   GSGKTL  ++     +          G  
Sbjct: 129 EPTAIQAQGWPIAL----SGRDLVGIAQ--TGSGKTLAYILPATVHINHQPRLSRGDGPI 182

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LAQQ     + +  ++ I    I G  P+  + + LER       I I T 
Sbjct: 183 VLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQARDLER----GVEICIATP 238

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 239 GRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKE 298

Query: 434 TLVLTSLGDIDISKIT----EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              L      D  +I        A     + V I      E+     +     ++   + 
Sbjct: 299 VQALAEDFLSDYIQINIGSLTLAANHNIRQIVEICQEHEKEMKLSQLLREIGTERGSKMI 358

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +E KK+ +     +   ++     S+I+I HG  S  +++ V+  F+NG   +L+AT 
Sbjct: 359 IFVETKKKVD-----DITKTIKREGWSAISI-HGDKSQPERDYVLSEFRNGKTMILVATD 412

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV D   +I  +  +     +H++ GR GR +   +    + P  ++ +   ++
Sbjct: 413 VAARGLDVEDVKYVINFDYPNSSEDYIHRI-GRTGRCQSAGTAYAYFTPNNARQAKELIA 471

Query: 610 VLKNTEDGFLIAEEDL 625
           VL+           D+
Sbjct: 472 VLEEAGQAINPQLADM 487


>gi|320167743|gb|EFW44642.1| eIF4AIII protein [Capsaspora owczarzaki ATCC 30864]
          Length = 413

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 79/372 (21%), Positives = 141/372 (37%), Gaps = 37/372 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N++ ++ Q I       P+  Q+ AI+ IL+          I Q   G+GKT    I+ 
Sbjct: 42  MNLKPELLQGIYAYGFEQPSAIQQRAIRPILKGRDV------IAQAQSGTGKTATFSISA 95

Query: 315 AAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
              VE      QA++++P   LAQQ  + +        +      G +  A   K L+  
Sbjct: 96  LNCVEPATRETQALVLSPTRELAQQIQKVVLALGDYMGVQCHACIGGVSVAEDIKKLDYG 155

Query: 372 AHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAP 421
                H++ GT     D I+   L        IL   DE    G ++++    +      
Sbjct: 156 Q----HVVSGTPGRVFDMIKRRHLRTRNIKMLILDEADEMLSRGFKEQIYDIYRYLPPTT 211

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVL 479
            V++++AT     L +T+    D  +I  K      + IK   I + R +   + L  + 
Sbjct: 212 QVVIVSATLPHEVLEITTKFMTDPIRILVKRDELTLEGIKQFFISVEREEWKFDTLCDLY 271

Query: 480 SE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
                 +A   C           R  VE           +++ +HG M   +++++M  F
Sbjct: 272 DTLIITQAVIFCNT---------RRKVEFLAEEMAKANFTVSHMHGEMDQKERDTIMKQF 322

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G  ++LI T +   GIDV   S++I  +        +H++ GR GR       I    
Sbjct: 323 RSGATRVLITTDLWARGIDVQQVSLVINYDLPINRENYIHRI-GRSGRFGRSGVAINFVT 381

Query: 598 PPLSKNSYTRLS 609
               +       
Sbjct: 382 NDDVRTLRDIEQ 393


>gi|299117107|emb|CBN73878.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 467

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 135/373 (36%), Gaps = 38/373 (10%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-- 320
           + + +  P  PT  Q       L        M+ I     GSGKTL  L+     + A  
Sbjct: 75  EVLKQGFP-KPTPIQSQGWPMAL----LGRDMVGI--SATGSGKTLAFLLPAMIHINAQP 127

Query: 321 ------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                 G   +++AP   LA Q  E   K+  ++ I    + G +P+  +   L R    
Sbjct: 128 YLEQGDGPIVLVVAPTRELAVQIKEECDKFGGSSDIKNTCVYGGVPKRSQVYDLSR---- 183

Query: 375 QAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVL 424
              I+I T     D ++  K        L+L   D     G + +++    Q       L
Sbjct: 184 GVEIVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRSIVSQIRPDRQTL 243

Query: 425 LMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           + +AT       L    L +     +             ++ I         L   L E 
Sbjct: 244 MWSATWPKEVEGLARDFLRNYYQVTVGSLELSANKDIQQVVEIVEDFGKYRVLAKHLQEH 303

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             A  +   +E KK  +         SL      ++AI HG  +  +++ V+  FK G  
Sbjct: 304 NNAGRVLIFVETKKGCD-----ALTRSLRHEGWPALAI-HGDKNQSERDRVLHDFKEGRS 357

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+DV D  ++I  +      + +H++ GR GR     + I  +    SK
Sbjct: 358 LILVATDVAARGLDVKDIRMVINFDFPKEMESYVHRI-GRCGRAGHKGTAISFFAGKNSK 416

Query: 603 NSYTRLSVLKNTE 615
            +   + +LK   
Sbjct: 417 CARELIRILKQAN 429


>gi|229918086|ref|YP_002886732.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
 gi|229469515|gb|ACQ71287.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
          Length = 509

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 162/443 (36%), Gaps = 60/443 (13%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
             + F   T  Q   I   L        +  + Q   G+GKT    I     +++     
Sbjct: 18  HKMGFEEATPIQAETIPVALTG------VDVLGQAQTGTGKTAAFGIPTIERIDSKARQV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+++AP   LA Q  E + K  +  ++    + G      + + L++       I++ T
Sbjct: 72  QALVLAPTRELAIQVAEELNKIGETKRVYALPVYGGQQIDRQIRGLKK----NPQIVVAT 127

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D ++   + L  +        DE    G  + +           +L       +T
Sbjct: 128 PGRLMDHMKRKTIKLDDIQTVILDEADEMLNMGFVEDI---------ETILAGLPEERQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I KI E+   + P    +       E I +  + L EG+K   +C  I+ 
Sbjct: 179 LLFSATMPPQIKKIAERFM-KSPTIIKVKAKEMTVENINQQFLELREGQKFDTLCRLIDI 237

Query: 495 KKE---SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                   F    +R + + E           +HG ++   ++ V+  FKNGT  +L+AT
Sbjct: 238 DSPELSIIFARTKKRVDEVTEALIKRGYTADGLHGDLTQSKRDQVIRRFKNGTIDILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---------- 598
            V   G+D+   + +   +      + +H++ GR GR  +  + +    P          
Sbjct: 298 DVAARGLDISGVTHVYNFDVPQDPESYVHRI-GRTGRAGKTGTALTFITPREFGQVKAIE 356

Query: 599 ---PLSKNSYTRLSVLKNTEDGFLIAEEDLKQR-KEGEILGIKQSGMPKFLIAQPELHDS 654
                  N     ++ +  E     A E+L +R + G+     Q           E +++
Sbjct: 357 RVTNKKMNRRHVPTIAEVLEGNQKQAAEELIERVQAGDFKAYTQ-----LATELLEEYEA 411

Query: 655 LLEIARKDAKHILTQDPDLTSVR 677
           +  +A   A   LT++PD T V 
Sbjct: 412 VEILA--AALRGLTKEPDSTPVE 432


>gi|60417515|emb|CAI59960.1| ATP-dependent RNA helicase (DEAD/DEAH box family) [Listeria
           ivanovii]
          Length = 474

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 133/370 (35%), Gaps = 38/370 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  ++ +  + +   T  Q+  I   L           + +   GSGKT    I +A  
Sbjct: 11  SEEIKRAINELGYKEATPVQKEVIPVALTGKD------IVAKSQTGSGKTAAFAIPIAEQ 64

Query: 318 V---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           V   E   QA+I+ P   LA Q         +  +I    I G  P A ++  L +    
Sbjct: 65  VIWEENKPQALIIVPTRELAMQVKAECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKN-- 122

Query: 375 QAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
             HI++GT     D I+   L        +L  VDE    G   ++   L         L
Sbjct: 123 --HIVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNL 180

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             +AT       L      D   I        PI  + +     ++ ++   V+++E   
Sbjct: 181 FFSATMPEEMQDLIKRYQDDPIVIEMAAEKTNPITHIEMQTENKEKTLQD--VLITENPD 238

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +  I    + +            + L +    + A IHG +   ++   MD FK+G  + 
Sbjct: 239 SAIIFCNTKNQ-----------VDELSDLLQVNTAKIHGGLRQEERFRAMDDFKSGKSRF 287

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   GIDV + +++I  +        +H++ GR GR       I       +   
Sbjct: 288 LIATDVAGRGIDVENVTLVINYDLPIEKENYVHRI-GRTGRAGNSGKAISFVKTNENPLL 346

Query: 605 YTRLSVLKNT 614
                +LK T
Sbjct: 347 RDMEDMLKIT 356


>gi|307824474|ref|ZP_07654699.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307734458|gb|EFO05310.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 441

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 119/356 (33%), Gaps = 28/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q+ AI  IL+          +     G+GKT    + +   +             
Sbjct: 23  TPTPVQQKAIPLILEGKDV------LAGAQTGTGKTASFTLPLLQRLAENHDPHQKPRRV 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q YE +K Y  +     E + G      + + L R       I++ T
Sbjct: 77  RALILVPTRELAAQVYESVKTYGAHLPFHAEAVVGGASIGIQTRQLRR----GCDIVVAT 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D +Q   + L  V E        R+           L+       ++L+ ++   
Sbjct: 133 PGRLIDHVQQRNINLSNV-EVLVLDEADRMLDMGFLPDIKQLMALIPKKRQSLLFSATVP 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
             I  +  +     P++  +   N   E +      +    K   +   I          
Sbjct: 192 NAIKSLAAQLLN-NPVEVEVAKQNATAENVAERVYGIGREYKRELLSYLIGSNNWKQVLV 250

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   +R            A +HG  +   +   ++ FK G   +L+AT +   G+D
Sbjct: 251 FVRTKHGADRLEKQLIEDGIRTAALHGDKTQGARNKALEQFKTGKVSVLVATDIAARGLD 310

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           + D   ++  +        +H++ GR GR       + L  P  +        +LK
Sbjct: 311 IDDLPHVVNFDVPQVPEDYIHRI-GRTGRAGANGEALSLVCPEEAWMLVEIEKLLK 365


>gi|158321361|ref|YP_001513868.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           oremlandii OhILAs]
 gi|158141560|gb|ABW19872.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
           OhILAs]
          Length = 461

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 130/343 (37%), Gaps = 34/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT  Q  +I   LQ          I Q   G+GKT   ++ +   +   +   QA+I+A
Sbjct: 25  EPTPIQRESIPVALQGKD------IIAQAQTGTGKTFAFMLPILQKINKNQKDVQALILA 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q     KK  +   + V  + G      +   L     G  H++I T     D
Sbjct: 79  PTRELALQITTEAKKIAKGLDVNVLAVYGGQDVEKQIHKL----KGGMHVVIATPGRLLD 134

Query: 389 SIQYY--------KLILVIVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP---RTLV 436
            ++          +L+L   D+    G  ++   + +K      L++ +  IP   R L 
Sbjct: 135 HLRRGTMHLKAVNQLVLDEADQMLTMGFLEEVEYIIKKTPQNRQLMLYSATIPKGIRALT 194

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              + +    +I         IK +++      +    + ++  E      +  + + + 
Sbjct: 195 NRYMKNPVEIRIHSNKVTLDEIKQLVVETTDRHKQEALMHMIKQENPFLAIVFCRTKRRV 254

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           ++   +++E+          S   +HG M+   +E VM  F+N   ++L+AT V   GID
Sbjct: 255 KTLSDALIEK--------GFSCDELHGDMTQAKREKVMKEFRNAKLQILVATDVAARGID 306

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   + +   +        +H++ GR GR  +    I    P 
Sbjct: 307 VEGITHVFNYDIPQDVEGYIHRI-GRTGRAGDKGMAITFAAPK 348


>gi|149011438|ref|ZP_01832685.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764428|gb|EDK71359.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP19-BS75]
          Length = 210

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 87/225 (38%), Gaps = 19/225 (8%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L  PL    GVG K +   +K+            DLL Y P  + D     ++ E+ +  
Sbjct: 3   LHQPLHVLPGVGPKSAEKYAKL------GIENLQDLLLYFPFRYEDF-KTKQVLELEDGE 55

Query: 69  IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGK 128
              ++G +   +S Q    +  ++  +   GE+     +     L +    G  + V GK
Sbjct: 56  KAVLSGQVVTPASVQYYGFKRNRLRFSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGK 115

Query: 129 IKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSR-LPVL-P 186
             + K  +  +    +    +D     ++ VY L  G+S     K+I  A  + L +L  
Sbjct: 116 WDRAKASLTGMK---VLAQVEDD----LQPVYRLAQGISQASLVKVIKTAFDQGLDLLIE 168

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
           E + + LL K    S  +A   +H P   KD      A  R+ ++
Sbjct: 169 ENLPQSLLDKYKLMSRCQAVRAMHFP---KDLAEYKQALRRIKFE 210


>gi|256424779|ref|YP_003125432.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256039687|gb|ACU63231.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 492

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 133/362 (36%), Gaps = 39/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +PT  Q+ AI  +L      +    +     G+GKT    I +   +    QA       
Sbjct: 49  APTPIQQQAIPHVL------DTRDLLGCAQTGTGKTAAFAIPLLQLMHQDQQAQQRKGLR 102

Query: 325 ----VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               +I+ P   LA Q  E    Y +   +   +I G + Q  + +AL++       I+I
Sbjct: 103 NIKALILTPTRELAIQIQESFTAYGKFLDLKSLVIFGGVSQHPQTEALKK----GVDILI 158

Query: 381 GTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D      I    +   ++DE  R      +   Q       +++      ++L
Sbjct: 159 ATPGRLLDLISQNYITLRDIKYFVLDEADRMLDMGFVHDVQ------RVIVKLPEQRQSL 212

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             ++    +I  + +      P K  + P++   E I +    +++  K   +   +++K
Sbjct: 213 FFSATMPPEIQTLAKAILRNNPAKVEVTPVSSTAETITQSMYFVNKNDKRNLLLHILKDK 272

Query: 496 K------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   +  +   +R          +   IHG  S   ++  +++FK+   ++L+AT 
Sbjct: 273 AIKTLLVFTRTKHGADRVVKDLHKAEITAEAIHGNKSQNARQRALNNFKSQQTRVLVATD 332

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   GID+ + + ++     +     +H++ GR GR       I    P         L 
Sbjct: 333 IAARGIDIDELTHVVNYELPNVPETYVHRI-GRTGRAGADGIAISFCEPEEKAFLKDILK 391

Query: 610 VL 611
           ++
Sbjct: 392 LI 393


>gi|124515178|gb|EAY56689.1| putative ATP-dependent helicase [Leptospirillum rubarum]
          Length = 444

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 74/348 (21%), Positives = 128/348 (36%), Gaps = 40/348 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ------AV 325
           SPT  Q+ +I  ++           +     G+GKT   L+ +   +  G +      A+
Sbjct: 23  SPTPIQKQSIPHVIDGRD------LLGIAQTGTGKTGGFLLPVLHKIAEGRRHGIRNRAL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +++P   LA Q ++  K Y +       ++ G +    + + L+R       I++ T   
Sbjct: 77  VLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLKRNW----DIVVATPGR 132

Query: 386 FQDSIQYYKLILVI-----VDEQHRFGVQQRLKL-----TQKATAPHVLLMTATPIPRTL 435
             D ++   L L       +DE  R      L        Q       LL +AT  PR  
Sbjct: 133 LLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQSLLFSATCPPRIQ 192

Query: 436 VLTSLGDIDISKITEKPA--GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L +    D   +  +P   G   I    I ++   + +  LK VL EGK         E
Sbjct: 193 ELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLDEGKS--------E 244

Query: 494 EKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             +   F         L      +      +HG  S   +  V+  F+ G  K+L+AT V
Sbjct: 245 TGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVLVATDV 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   + +I  +        +H++ GR GR       +  +HP
Sbjct: 305 AARGLDIDGITHVINYDLPQTAEDYVHRI-GRTGRAGRTGRALSFFHP 351


>gi|189239274|ref|XP_969642.2| PREDICTED: similar to conserved hypothetical protein [Tribolium
            castaneum]
          Length = 1494

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 169/475 (35%), Gaps = 60/475 (12%)

Query: 180  SRLPVLPEWIEK----DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
               P L E  E+    D     +     EA      P   K+F +  P    +  DE+ A
Sbjct: 1000 EPPPQLDEPQEEPKIVDWRAVFAKCDELEAEKWAALPPIKKEFYFEHPEVTAMTEDEVEA 1059

Query: 236  GQI--ALLLMRKQFKKEIGIPINVEGKIAQKILRNIP----------FS-PTKSQESAIK 282
             ++    +++ + FK E   P+       +      P          F+ P+  Q  A  
Sbjct: 1060 FRLESNNIVVERTFKTENSKPVPKPVVTFEHAFHKYPEILEEMKKAGFTRPSPIQSQAWP 1119

Query: 283  DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---------GGQAVIMAPIGIL 333
             +L           I     G+GKTL  L+     ++          G   ++MAP   L
Sbjct: 1120 VLLSGED------LIGIAQTGTGKTLAFLLPALIHIDGQNIKKSERGGPAVLVMAPTREL 1173

Query: 334  AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD----- 388
            A Q  + +KKY +   I    I G   +  + K L         I+I T     D     
Sbjct: 1174 ALQIDKEVKKY-EYKGITAVCIYGGGNRREQIKVLTD----GVDIVIATPGRLNDLAEAG 1228

Query: 389  SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             ++   +  V++DE  R          +K      ++ +  P  +T++ ++     + ++
Sbjct: 1229 HLEVKYVTYVVLDEADRMLDMGFEPQIRK------VMYSIRPTRQTVMTSATWPPGVRRL 1282

Query: 449  TEKPAGRKPIKTVIIPIN-----RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
             +      PI+  +  ++      + ++IE +     E  + +       +  E      
Sbjct: 1283 AQSYM-VDPIQIYVGTLDLAATHTVTQIIEIIPDDDQEKFRTFMNFATNLDPSEKVIAFC 1341

Query: 504  --VERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                R + L    T +      IHG     D+E  +    +GT ++LIAT V   G+D+ 
Sbjct: 1342 GKKARADELSTELTLAGLQCQTIHGDRDQSDREQALLDIADGTVQILIATDVASRGLDID 1401

Query: 559  DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            D + +I  +        +H++ GR GR  +    I  +       +   +++L+ 
Sbjct: 1402 DITHVINYDFPRNIEEYVHRV-GRTGRAGKSGKSISYFTRGDWAQAKELIAILEE 1455


>gi|289192981|ref|YP_003458922.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
           FS406-22]
 gi|288939431|gb|ADC70186.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
           FS406-22]
          Length = 362

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 82/343 (23%), Positives = 130/343 (37%), Gaps = 44/343 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAP 329
            PT  Q   I   L D         + Q   GSGKT    I +   V    G +A+I+ P
Sbjct: 23  KPTDIQMKVIPLFLNDKGN-----IVAQARTGSGKTAAFAIPLIELVNENNGIEAIILTP 77

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I+    N  + +  I G      + KAL+      A+I++GT     D 
Sbjct: 78  TRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDH 132

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLTS 439
           I    L L  V        DE    G  + +   L        +LL +AT     L L  
Sbjct: 133 INRGTLNLKNVKYFILDEADEMLNMGFVEDVERILNACNRDKRILLFSATMPREILNLAK 192

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               D S I  K                I+  IE+  + ++E ++   +C  ++ K    
Sbjct: 193 KYMGDYSFIKAK----------------INANIEQSYIEVNENERFEVLCRILKNKDFYG 236

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +   +   ++          IHG ++   +E V+  FK    K+LIAT V+  G
Sbjct: 237 LVFCKTKKDTKELANMLRDIGFKAGAIHGDLNQSQREKVIRLFKQKRIKILIATDVMSRG 296

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           IDV D + +I  +      + +H++ GR GR  +    I + +
Sbjct: 297 IDVNDLNCVINYHLPQNPESYMHRI-GRTGRAGKKGKAISIIN 338


>gi|212543663|ref|XP_002151986.1| RNA helicase (Dbp), putative [Penicillium marneffei ATCC 18224]
 gi|210066893|gb|EEA20986.1| RNA helicase (Dbp), putative [Penicillium marneffei ATCC 18224]
          Length = 554

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 78/366 (21%), Positives = 135/366 (36%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           +   + GSGKTL   +     + A        G  
Sbjct: 147 KPTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLSPGDGPI 200

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T 
Sbjct: 201 VLILAPTRELAVQIQTEISKFGRSSRIRNTCVYGGVPKGPQIRDLSR----GVEVCIATP 256

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G   Q R  + Q        + +AT    
Sbjct: 257 GRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMWSATWPKE 316

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I           T    V+    + D++I+ L+ ++ + K    
Sbjct: 317 VRQLASDFLNDFIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMEDRKNKCL 376

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            R   +    L +    +++I HG     +++ V+  FKNG   +++A
Sbjct: 377 IFT-------GTKRVADDITRFLRQDGWPALSI-HGDKQQNERDWVLQEFKNGKSPIMVA 428

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV D + +I  +  +     +H++ GR GR     + I  +    SK +   
Sbjct: 429 TDVASRGIDVRDITHVINYDYPNNSEDYVHRI-GRTGRAGAKGTAITFFTTDNSKQARDL 487

Query: 608 LSVLKN 613
           +++L  
Sbjct: 488 VTILSE 493


>gi|224121758|ref|XP_002318665.1| predicted protein [Populus trichocarpa]
 gi|222859338|gb|EEE96885.1| predicted protein [Populus trichocarpa]
          Length = 541

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 72/430 (16%), Positives = 153/430 (35%), Gaps = 49/430 (11%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI------- 265
              K+F + +P+   L+  E++         R+   +   +P  +               
Sbjct: 79  PFEKNFYFENPSIRALSEHEVVMY----RTRREITVEGHDVPKPIRLFHEANFPDYCLQV 134

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           +  + F  PT  Q       L+          I   + GSGKTL  ++     V A    
Sbjct: 135 IAKLGFVEPTPIQAQGWPMALKGRD------LIGIAETGSGKTLAYMLPAFVHVAAQPRL 188

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G   +++AP   LA Q  E   K+     I    I G  P+  + + L+R      
Sbjct: 189 VQGDGPIVLVLAPTRELAVQIQEEGLKFGSPANIRSTCIYGGAPKGPQIRDLQR----GV 244

Query: 377 HIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            I+I T     D ++       ++  +++DE  R          +K      ++    P 
Sbjct: 245 EIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRK------IISQIRPD 298

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            +TL  ++    ++  +  +         +     + ++ I ++  V+ + +K   +   
Sbjct: 299 RQTLYWSATWPREVEILARQFLHNAYKVIIGSADLKANQSINQVVEVIMDMEKYNRLIKL 358

Query: 492 IEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           ++E  +          +   ++              IHG  +  +++ V+  FK+G   +
Sbjct: 359 LKEVMDGSRILIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSAI 418

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           + AT V   G+DV D   +I  +        +H++ GR GR     +    +    +K +
Sbjct: 419 MTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRI-GRTGRAGARGTAFTFFTDSNAKFA 477

Query: 605 YTRLSVLKNT 614
              + +L+ +
Sbjct: 478 RGLIRILQES 487


>gi|156553787|ref|XP_001602045.1| PREDICTED: similar to GH10652p [Nasonia vitripennis]
          Length = 682

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 79/366 (21%), Positives = 141/366 (38%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L        M+ I Q   GSGKTL  ++     +          G  
Sbjct: 174 EPTAIQAQGWPIAL----SGRDMVGIAQ--TGSGKTLAYILPAIVHINNQPRLQRGDGPI 227

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +    +  ++Q+    I G  P+  + + LER       I I T 
Sbjct: 228 ALVLAPTRELAQQIQQVAADFGVSSQVRNTCIFGGAPKGPQARDLER----GVEICIATP 283

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G   Q R  + Q       L+ +AT    
Sbjct: 284 GRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 343

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I   +  A    ++ V +     +  ++++ L+ +  E +    
Sbjct: 344 VRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKEGKLMKLLEEISQEAENKTI 403

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I  + +       R V E   +++ +   +I I HG  S  +++ V++ F++    +L+A
Sbjct: 404 IFVETK-------RKVDEITRAINRYGWQAIGI-HGDKSQQERDYVLNQFRSSRSAILVA 455

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +        +H++ GR GR +   +    + P  +  +   
Sbjct: 456 TDVAARGLDVEDVKFVINLDYPSNSEDYVHRI-GRTGRSQRTGTAYAFFTPGNAHKANDL 514

Query: 608 LSVLKN 613
           + VL+ 
Sbjct: 515 IQVLEE 520


>gi|224418675|ref|ZP_03656681.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           canadensis MIT 98-5491]
 gi|253826788|ref|ZP_04869673.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT
           98-5491]
 gi|313142197|ref|ZP_07804390.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491]
 gi|253510194|gb|EES88853.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT
           98-5491]
 gi|313131228|gb|EFR48845.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491]
          Length = 505

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 143/372 (38%), Gaps = 41/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            P+  Q+  I  IL  +        I Q   G+GKT    + +   +   G  + +I+AP
Sbjct: 31  EPSPIQKEVIPVILDGLDV------IAQAQTGTGKTAAFALPLINELRHDGSIEVLIVAP 84

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q  + + K  +  ++    + G  P   + + LE+    +  I+I T     D 
Sbjct: 85  TRELVMQIGDEVFKLGKYNKVRTVSLFGGQPIRRQIELLEK----KPQIVIATPGRLLDH 140

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           ++  +L        +L   DE    G    ++      +            +TL+ ++  
Sbjct: 141 LRNGRLKDFDPRVVVLDESDEMLDMGFLDDIEEIFTYLSSD---------RQTLLFSATM 191

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KKES 498
              I  + +K     P    + P +  ++ I +   +++E ++   I   I+     K  
Sbjct: 192 PTPIKHLAQK-ILHNPKLIKVTPSDTTNQDISQRYYIINEQEREDAIVRLIDSEMPSKAI 250

Query: 499 NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F  + +  + L E   +       +HG M   +++  + +FK+ +  +L+AT +   G+
Sbjct: 251 IFTRMKKEADLLCERLVNRGYKAGALHGDMEQRERQKSIKAFKDSSINVLVATDIAARGL 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+   S +   +      + +H++ GR GR  +    I L  P           + +NT+
Sbjct: 311 DISGVSHVFNFHIPLNPESYVHRI-GRTGRAGKKGVAITLATP---LEFKELRRIKENTK 366

Query: 616 DGFLIAEE-DLK 626
               + E  DL+
Sbjct: 367 AKIELYEIPDLQ 378


>gi|319950441|ref|ZP_08024356.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4]
 gi|319435905|gb|EFV91110.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4]
          Length = 679

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 81/404 (20%), Positives = 144/404 (35%), Gaps = 41/404 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q + I  +L+          +     G+GKT    + + + ++      QA+I+AP
Sbjct: 72  PSAIQAATIPLVLEGRDV------VGLAQTGTGKTAAFALPILSLIDPSVKSPQALILAP 125

Query: 330 IGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q     +       Q+ V  I G      +   L R     A II+GT     D
Sbjct: 126 TRELALQVAEACVTYSAGMPQVNVLPIYGGQAYGIQLSGLRR----GAQIIVGTPGRVID 181

Query: 389 SIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRTLV 436
            ++           L+L   DE    G Q+ +   L+    +  V L +AT     R + 
Sbjct: 182 HLKKGTLDLSGLRHLVLDEADEMLAMGFQEDVERILSDTPESTQVALFSATMPSAIRRIS 241

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              L D    K+  K +    I+   + +N  D++    +++  E   A  +  +     
Sbjct: 242 QKYLTDPTEVKVASKTSTAPTIQQRYVLVNHRDKLDALTRILEVEDFDAMIMFVRT---- 297

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +S  E           S A I+G +    +E  +++ K+G   +L+AT V   G+D
Sbjct: 298 ----KSATEELAERLRARGFSAAPINGDIPQNLRERTIEALKDGRTDILVATDVAARGLD 353

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S ++  +  H   + +H++ GR GR       +L   P   +         +    
Sbjct: 354 VPRISHVVNYDIPHDTESYIHRI-GRTGRAGRSGHALLFVTPRERRLLSQIERATRQPLT 412

Query: 617 GFLIAEED--LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
              +   D   + R    +    QS           L   L+E 
Sbjct: 413 EVQLPSVDDVNEMR----MAKFAQSITESLDDPNIALFRRLVEE 452


>gi|300812076|ref|ZP_07092524.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496915|gb|EFK31989.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 481

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 130/348 (37%), Gaps = 37/348 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ----- 323
            F   T  Q   I   L           I Q   G+GKT    + +   ++   Q     
Sbjct: 20  GFEEATPIQAQTIPLALAGQDV------IGQAQTGTGKTAAFGLPILQKLDLDKQEQAIQ 73

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA Q  E + +  ++    V+++ G      + +AL++       I++GT 
Sbjct: 74  AIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALKKA----PEILVGTP 129

Query: 384 ALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PIP 432
               D ++   + L  V        DE    G  Q +   LT        LL +AT P P
Sbjct: 130 GRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQTLLFSATMPKP 189

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            + L    + D  + KI  K      I    + +   ++     +++  E      +  +
Sbjct: 190 IQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLIDVENPDLAVVFGR 249

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            + + +   R +V R          + A IHG ++   +  V+  FK G   +L+AT V 
Sbjct: 250 TKRRVDELTRGLVAR--------GYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDVA 301

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 302 ARGLDISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGKSGMSVTFVTPN 348


>gi|257899462|ref|ZP_05679115.1| helicase [Enterococcus faecium Com15]
 gi|293573030|ref|ZP_06683972.1| cold-shock deAd box protein a [Enterococcus faecium E980]
 gi|257837374|gb|EEV62448.1| helicase [Enterococcus faecium Com15]
 gi|291606932|gb|EFF36312.1| cold-shock deAd box protein a [Enterococcus faecium E980]
          Length = 503

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 127/346 (36%), Gaps = 35/346 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  Q   I   L           I Q   G+GKT    + M   ++      Q +
Sbjct: 20  GFEEATPIQAETIPLALAGKDV------IGQAQTGTGKTAAFGLPMLEKIDPDRHELQGL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E + +  ++ ++ V+ + G      + + L+     + HI++GT   
Sbjct: 74  VIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLKD----RPHIVVGTPGR 129

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--R 433
             D I  + L L  V        DE    G  + +   ++Q       LL +AT  P  +
Sbjct: 130 MLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAIK 189

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + +  +      KI  K      I    +     ++     ++   +  +   +  +  
Sbjct: 190 NIGVKFMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTPELTIVFGRT- 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+      E        IHG +S   + SV+ SFKNG   +L+AT V   
Sbjct: 249 -------KRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHLDILVATDVAAR 301

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKGGMSVTFVTPN 346


>gi|225445460|ref|XP_002285108.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 615

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 63/373 (16%), Positives = 137/373 (36%), Gaps = 43/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
            PT  Q  AI      M+ ++ M        GSGKT      +   +             
Sbjct: 155 KPTPIQRHAIPIA---MAGRDLM---ACAQTGSGKTAAFCFPIICGILRNQLSRGGARLA 208

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              A+I++P   L+ Q +E  KK++  T + V +  G  P + + + LER       I++
Sbjct: 209 CPTALILSPTRELSCQIHEEAKKFSYKTGLKVVVAYGGAPISQQFRNLER----GVDILV 264

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D I+  ++ L ++     DE  R          Q       + M      +T+
Sbjct: 265 ATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEP--QIRKIVEQMDMPPPGARQTM 322

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I ++         I   +  +    ++I +    + +  K Y +   ++ +
Sbjct: 323 LFSATFPNEIQRLAADFL-SNYIFLSVGRVGSSTDLIVQRVEFVEDTDKRYHLMDLLQSQ 381

Query: 496 KES-------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +               +  V+           +   IHG    +++E  + SFK+G  
Sbjct: 382 MTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERALKSFKSGAT 441

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +++AT V   G+D+   + +I  +        +H++ GR GR  +       ++     
Sbjct: 442 PIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRI-GRTGRAGKSGLATAFFNDGNLS 500

Query: 603 NSYTRLSVLKNTE 615
            + + + +++ + 
Sbjct: 501 LAKSLVELMQESN 513


>gi|89072916|ref|ZP_01159473.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89051438|gb|EAR56893.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 654

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 166/423 (39%), Gaps = 34/423 (8%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L N+ F +PT  Q ++I  +L           + +   G+GKT    + +   V+     
Sbjct: 47  LDNMGFVAPTPIQAASIPLLLTG------TDALGKAQTGTGKTAAFSLPVLNKVDLSQHK 100

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++MAP   LA Q    IK   QN   + V  I G      + +AL       AHI++
Sbjct: 101 PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRAL----KNGAHIVV 156

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLT 438
           GT    +D I   +L L   DE H F + +    L          +M   P   + ++ +
Sbjct: 157 GTPGRVKDLISRKQLQL---DEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLFS 213

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     + +I ++   R P +  +   NR    +E+   V+   +K   +   +E +   
Sbjct: 214 ATMPPIVKEIVDRFL-RNPARIDVAGENRTVSKVEQQFWVVKGVEKDEAMSRLLETEDTD 272

Query: 499 ------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R   ER            A +HG +    +E  +D  K G   +L+AT V+ 
Sbjct: 273 ASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVA 332

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   + +   +      + +H++ GR GR       ILL      +   T   V K
Sbjct: 333 RGLDVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRAGKAILLVRTNQIRMLRTIERVTK 391

Query: 613 NTEDGFLIAEEDL----KQRKEGEILGI--KQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           +  +   +   DL    +  + GE L    +Q+ +  F+    +L +S+   A   A  +
Sbjct: 392 SRMEEIQLPLRDLVAASRLNRLGEELAAQKEQTSVEAFVELVEKLQESIDVDAATLAAML 451

Query: 667 LTQ 669
           L +
Sbjct: 452 LQR 454


>gi|85703303|ref|ZP_01034407.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217]
 gi|85672231|gb|EAQ27088.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217]
          Length = 515

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 138/354 (38%), Gaps = 46/354 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   LQ          +     G+GKT    + M + +  G       +++
Sbjct: 24  TPTPIQAEAIPHALQGRDV------LGIAQTGTGKTASFTLPMLSLLSRGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y+++ ++   ++ G +    + K +++       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDK----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     ++VDE  R      +   ++       + + TP   +TL  ++
Sbjct: 134 LLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIER-------IFSLTPFTRQTLFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-------LKVVLSEGKKAYWICPQI 492
               +I +IT       P +  +       E IE+        +   ++ +K   +   I
Sbjct: 187 TMAPEIERITNTFL-SNPARVEVARQATASETIEQGVVMFKPTRRENADSEKRRLLRALI 245

Query: 493 EEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           + + E         N +  V+  +     +    A IHG +    +   +D F+ GT + 
Sbjct: 246 DREGEACSNAIIFCNRKVDVDVVSKSLIKYGYDAAPIHGDLEQSQRTRTLDGFRAGTLRF 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           LIA+ V   G+DV   S +   +        +H++ GR GR       +++ +P
Sbjct: 306 LIASDVAARGLDVPAVSHVFNFDVPSHAEDYVHRI-GRTGRAGRAGKALMICNP 358


>gi|301755322|ref|XP_002913508.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like [Ailuropoda
           melanoleuca]
          Length = 654

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 430

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 431 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 544 FFNERNINITKDLLDLLVE 562


>gi|118578871|ref|YP_900121.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118501581|gb|ABK98063.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 454

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 66/342 (19%), Positives = 126/342 (36%), Gaps = 27/342 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +PT  Q+ AI  ++           I     G+GKT   ++     +         G + 
Sbjct: 23  TPTPIQQQAIPVVMTG------SDLIATAQTGTGKTAAFVLPALQRLSTPSSVPGKGPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  +  + Y +  ++    I G MP   + + L         +I+ T  
Sbjct: 77  LVLTPTRELAGQCIDAARSYGRGARLRCGSILGGMPYREQLRLLSAP----VDLIVATPG 132

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D ++   + L  + E        R+     +     ++  A    +TL+ T+     
Sbjct: 133 RLLDHLERGSIALNRL-EMLVLDEADRMLDMGFSEDMEKIVSAAPQERQTLMFTATMGTT 191

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK-------KE 497
           + K+ EK         + +  +  + + +RL V  + G K   +   + +K         
Sbjct: 192 VLKLAEKMLRNPQRIELAVRTSSHELIEQRLHVADNLGHKKELLRHLVSDKGLTRAIIFS 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  R   E    L      + A +HG M+   +   ++  + G  +LL+AT V   G+DV
Sbjct: 252 ATKRDADELARELSREGHPA-APLHGDMNQFARNKTIERMRKGAIRLLVATDVAARGLDV 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              S +I  +   F    +H++ GR GR       I    P 
Sbjct: 311 NGISHVINFDLPRFAEDYVHRI-GRTGRAGASGIAISFVSPS 351


>gi|254693665|ref|ZP_05155493.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 3 str. Tulya]
 gi|261213932|ref|ZP_05928213.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|260915539|gb|EEX82400.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
          Length = 482

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 138/365 (37%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQVGAIPPALE------RKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTL 435
             D  +  KL+L  V     DE  R      +   ++           L  +AT  P   
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEIT 193

Query: 436 VLTSLGDIDISKI-------TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            LT        +I       T K   ++ +K+     ++   + + ++      K A   
Sbjct: 194 KLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEGDSLKNAIIF 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         + V E F SL  H       +HG M    + +++ SFK+G  +LL+A+
Sbjct: 254 CNR--------KKDVSELFRSLTRH-EFDAGALHGDMDQRARMAMLSSFKDGKLRLLVAS 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S +   +        +H++ GR GR         +     +K      
Sbjct: 305 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGKAFTIVTSSDTKYLAAIE 363

Query: 609 SVLKN 613
           S++  
Sbjct: 364 SMIGE 368


>gi|114778501|ref|ZP_01453345.1| putative ATP-dependent RNA helicase DbpA [Mariprofundus
           ferrooxydans PV-1]
 gi|114551226|gb|EAU53785.1| putative ATP-dependent RNA helicase DbpA [Mariprofundus
           ferrooxydans PV-1]
          Length = 459

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 89/456 (19%), Positives = 170/456 (37%), Gaps = 56/456 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +   T  Q+ ++ DIL           I QG  GSGKT    + +   ++     
Sbjct: 19  LATLGYEAMTPIQQQSLPDILAGRDV------IAQGQTGSGKTAAFGLGLLQKLDITKPH 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + I+K  +    I V  + G MP   +  +LE      AHII+
Sbjct: 73  VQSLVLCPTRELADQVAKEIRKLARKLANIKVLTLCGGMPFGPQIGSLEH----GAHIIV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    +D +    L L  V          R+      +    ++       +TL+ ++ 
Sbjct: 129 GTPGRIEDHMNRGTLKLDRVT-TLVLDEADRMLEMGFQSVLDSIIGKIPKQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I  + ++    KP+   +   +    + +    V  + ++   +   + + K    
Sbjct: 188 FPDQIQSVAKRIMD-KPVMVAVASTHDDSSIEQHFYKVSDDEQRMTALRLLLLQHKPVST 246

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N ++  E           S   ++G +   D++ VM  F N +  +L+AT V   G
Sbjct: 247 LVFCNTKAETEAVAKTLVWHGFSALALNGDLEQRDRDQVMVRFANKSISVLVATDVAARG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+     +I  +  H     +H++ GR GR         LY              L   
Sbjct: 307 LDIDALDAVINYHIAHDPEVHVHRI-GRTGRAGSKGVACSLYRENP-YRMTVLGDYLGRV 364

Query: 615 EDGFLIAEEDL---------------------KQRKEGEILG--IKQSGMPKFLIAQPEL 651
            +G  +   +L                     K R  G+ILG    ++G+    + +  +
Sbjct: 365 IEGETLPPAELLKQAPTRPLMTTLQIGGGKKQKIR-PGDILGALTGEAGIAGSQVGKIHI 423

Query: 652 HD--SLLEIARKDAKHILTQDPDLTS--VRGQSIRI 683
            D  S + ++R   K  + +   LT+  ++G+S R+
Sbjct: 424 MDNWSYVAVSRDAVKTAIRK---LTAGKLKGRSFRV 456


>gi|329121361|ref|ZP_08249987.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
 gi|327469770|gb|EGF15236.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
          Length = 497

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 128/343 (37%), Gaps = 40/343 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+ A+   +Q          I Q   G+GKT    I +   ++    G QA++++
Sbjct: 31  EPSPIQKEAVPIAMQGKD------LIGQAQTGTGKTAAFGIPILQRIDTSKPGPQAIVLS 84

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I    Q   I    I G      + +AL++    + +II+ T     D
Sbjct: 85  PTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFRALKK----KTNIIVATPGRLMD 140

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
            ++   + L  V        DE    G    +            +M ATP   +TL  ++
Sbjct: 141 HMKRKTIDLSNVQIAVLDEGDEMVDMGFIDDI----------RTIMAATPKERQTLFFSA 190

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                I ++         I  +      ID +IE+  + L + +K   +C  ++ +    
Sbjct: 191 TMPAPIRELANSFLNEPEIVKIKAATVTID-LIEQEYIELPDRQKFDALCRLLDMQSPEL 249

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   +      +    S   +HG +S   ++SV+  FK GT   L+AT V   
Sbjct: 250 AIVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLVATDVAAR 309

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           G+D+   + +   +        +H++ GR GR  +        
Sbjct: 310 GLDISGVTHVYNFDMPQDPEIYVHRV-GRTGRAGKTGLATTFV 351


>gi|237755972|ref|ZP_04584559.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691876|gb|EEP60897.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 405

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 141/354 (39%), Gaps = 33/354 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           L  + +S PT+ QE AI  ++           + Q   G+GKT    + +   V   +  
Sbjct: 21  LDELGYSKPTEIQEKAIPAVMTGKD------LVAQAQTGTGKTAAFGVPIVEKVNPKQKK 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  + IK+  +N ++    + G    +H+   L+    G   +++G
Sbjct: 75  VQALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQINFLK---KGSDVVVVG 131

Query: 382 THALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTL 435
           T    +D ++   L L  V     DE  R      +   ++       +M+  P   + L
Sbjct: 132 TPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEE-------IMSYLPEDRQIL 184

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I ++ E+          + P     E I+++   ++   K   +   + + 
Sbjct: 185 LFSATMPKEILELAEEFLNENYETIKVKPDEVTVEKIKQIIYRVNPRDKFKKLTEVLSQN 244

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +       +  +   +           + + IHG  S   +E+V+ +F+ G  K+L+AT 
Sbjct: 245 EAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKILVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           V   G+D+    ++I         + +H++ GR GR     + I +      K 
Sbjct: 305 VAARGLDIKGVDLVINYGLPRDAESYIHRI-GRTGRAGREGTAISIMTSSEDKQ 357


>gi|73965189|ref|XP_861178.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           isoform 2 [Canis familiaris]
          Length = 432

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 133/383 (34%), Gaps = 45/383 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q   +   L        M+ I     GSGKT   +  M   +          G  
Sbjct: 11  QPTPIQCQGVPVAL----SGRDMIGI--AKTGSGKTAAFIWPMLIHIMDQKELEPGDGPI 64

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AVI+ P   L QQ +   K++ +   +    + G      + KAL+      A I++ T 
Sbjct: 65  AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE----GAEIVVCTP 120

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D ++           L+    D     G + +++                P  +TL
Sbjct: 121 GRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVR---------PDRQTL 171

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK-KAYWICPQIEE 494
           + ++     I K+  +     PI+ V   I   +E + ++  +L  G  K  W+  ++ E
Sbjct: 172 LFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVE 230

Query: 495 KKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        ++  E   +  +    ++ ++HG M   ++  V+  FK     +L+A
Sbjct: 231 FTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVA 290

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+     +I  +         H++ GR GR  E      L  P  S  +   
Sbjct: 291 TDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGRAGEKGVAYTLLTPKDSNFAGDL 349

Query: 608 LSVLKNTEDGFLIAEEDLKQRKE 630
           +  L+           DL  +  
Sbjct: 350 VRNLEGANQHVSKELLDLAMQNA 372


>gi|312892306|ref|ZP_07751801.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311295090|gb|EFQ72264.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 428

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 141/361 (39%), Gaps = 38/361 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---------GGQ 323
           PT  QE +I  IL+      R   +     G+GKT    I +   +           G +
Sbjct: 24  PTPIQEQSIPIILE------RKDLLGCAQTGTGKTAAFAIPILQILYQEKVQNRDHKGIK 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   LA Q  E    Y ++T +   +I G + Q H+ +AL+R       I++ T 
Sbjct: 78  TLILTPTRELAIQIDESFAAYGKHTGLKHLVIFGGVSQHHQVEALKR----GVDILVATP 133

Query: 384 ALFQDSIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D +Q        L ++++DE  R      +   +K      ++       +TL  +
Sbjct: 134 GRLLDLVQQKFVHLESLKILVLDEADRMLDMGFVNDVKK------IIAKIPVKRQTLFFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-- 496
           +    +I  + +     KP K  + P++   + I++    + +  K   +   +++KK  
Sbjct: 188 ATMPKEIQTLADTILN-KPEKVEVTPVSSTADTIQQGIYFVDKNDKKSLLIHILKDKKIE 246

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  +   ++          +   IHG  S   ++  + +FKN + ++L+AT +  
Sbjct: 247 TALVFTRTKHGADKVVKDLIRVGITAEAIHGNKSQNARQRALTNFKNRSTRILVATDIAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GIDV D + +I     +     +H++ GR GR       +        +  Y    ++ 
Sbjct: 307 RGIDVDDLTHVINYELPNVPETYVHRI-GRTGRAGASGIALSFCDADEGEFLYDIHKLIT 365

Query: 613 N 613
            
Sbjct: 366 K 366


>gi|71734200|ref|YP_275777.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554753|gb|AAZ33964.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 570

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 142/373 (38%), Gaps = 46/373 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ +I  IL           I Q   G+GKT    + +   ++      QA+I+A
Sbjct: 39  EPSAIQQQSIPIILAGHD------MIGQAQTGTGKTAAFALPILHRIDPSKREPQALILA 92

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y  Q   + V  + G  P   + KA+       A I++ T     
Sbjct: 93  PTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN----GAQIVVATPGRLC 148

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLT 438
           D ++           L+L   DE  + G    L+          ++  A P   +T++ +
Sbjct: 149 DHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLE----------VIFKAMPETRQTVLFS 198

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I  I E+   R P    I    +    IE+  +++   +K   +   +E +   
Sbjct: 199 ATLPQSIRAIAERHL-RDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFD 257

Query: 499 NFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                V          S  E      A ++G ++   +E V+DS K+G   +++AT V  
Sbjct: 258 ALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAA 317

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   + +   +  +   + +H++ GR GR       +LL  P         L V++
Sbjct: 318 RGLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGREGRALLLVTPRE----RRMLQVIE 372

Query: 613 NTEDGFLIAEEDL 625
               G  +AE  L
Sbjct: 373 RVT-GQKVAEVRL 384


>gi|223590207|sp|A5DE68|FAL1_PICGU RecName: Full=ATP-dependent RNA helicase FAL1
 gi|190345565|gb|EDK37471.2| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 397

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 84/362 (23%), Positives = 142/362 (39%), Gaps = 41/362 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +P+  Q  AI  I++          I Q   G+GKT    I + ++++      QA++++
Sbjct: 46  APSAIQSRAIMQIIRGRDT------IAQAQSGTGKTATFSIGILSSIDTKSKDCQALVLS 99

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ    I+       +      G        K L++      HII GT     D
Sbjct: 100 PTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKKLQQGQ----HIISGTPGRVLD 155

Query: 389 SIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I+           L+L   DE    G ++++    K       V++++AT  P  L +T
Sbjct: 156 MIKRRNIMPRHVKMLVLDEADELLTKGFKEQIYEIYKTLPAGAQVVVVSATLTPEVLEMT 215

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           +    D  KI  K      K IK   I   + D   + L  +       +A   C     
Sbjct: 216 NKFTSDPVKILVKRDDVTLKGIKQYYIQCEKEDWKFDTLCDLYDNLTITQAVIFCNT--- 272

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 ++ V            ++A +HG M   D++S+M  F++G+ ++LI+T V   G
Sbjct: 273 ------KAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFRSGSTRVLISTDVWARG 326

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV   S++I  +        +H++ GR GR     + I L    L+      L  L++ 
Sbjct: 327 IDVQQVSLVINYDLPLDKENYVHRI-GRSGRFGRKGTAINL----LTSQDKDELKSLQHY 381

Query: 615 ED 616
             
Sbjct: 382 YS 383


>gi|74006728|ref|XP_850382.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 2 [Canis familiaris]
          Length = 663

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 430

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 431 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 544 FFNERNINITKDLLDLLVE 562


>gi|326793753|ref|YP_004311573.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326544517|gb|ADZ89737.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 425

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 71/380 (18%), Positives = 148/380 (38%), Gaps = 41/380 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
            P+  Q  AI  +L+          +     G+GKT    + +   +  G        +A
Sbjct: 23  EPSPIQAMAIPAVLEGKDV------MAAAQTGTGKTAGFTLPILELLSKGEKARSNNVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q +E    Y+QN  +  E++ G +    +   L R       +++ T  
Sbjct: 77  LVLTPTRELAAQVHENAAAYSQNLPLRAEVVFGGVKINPQMMKLRR----GVDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     +I + +L ++++DE  R      +   +       +L       +TL+ ++
Sbjct: 133 RLLDLFSQNAISFKQLEILVLDEADRMLDMGFIHDIK------RILKLLPKERQTLLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               DI ++ +    +  ++  + P N   EVI +  + + + KK+  +   I+ +  S 
Sbjct: 187 TFSDDIRELAQNVV-KDAVEVSVTPPNTTVEVIRQSLIPVDKSKKSAALKFLIQSRDLSQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +L +      A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANRLATLFQKAGIEAAAIHGNKSQGARTKALAGFKSGEIRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL-- 611
           GID+     ++  +  +     +H++ GR GR       I L     +       +++  
Sbjct: 306 GIDIDQLPHVVNFDLPNVPADYVHRI-GRTGRAGATGEAISLVSEDEADQLSDIENLIRK 364

Query: 612 ---KNTEDGFLIAEEDLKQR 628
              ++  +GF    E  + R
Sbjct: 365 PIPRDYLEGFKPVNEVRETR 384


>gi|291240646|ref|XP_002740231.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked-like
           [Saccoglossus kowalevskii]
          Length = 694

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 72/449 (16%), Positives = 147/449 (32%), Gaps = 64/449 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P  + D+    P  ERL  +        +      F K   IP+   G+   + +     
Sbjct: 180 PPSSDDWTKLLPRNERLERELFSGTSTGI-----NFDKYEDIPVEATGESIPEPVSEFSD 234

Query: 272 -----------------SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
                             PT  Q+ A+  I      + +   +     GSGKT   L+ +
Sbjct: 235 IDLGEIIQSNIKNSTYARPTPVQKYALPII------RLKRDLMACAQTGSGKTAAFLLPI 288

Query: 315 AAAVEAGGQA----------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
            + +   G                  +++AP   LA Q Y+  +K++  + +   ++ G 
Sbjct: 289 LSQIYENGPGKIPESRYARRKHFPLGLVLAPTRELASQIYDEARKFSYRSHVRPCVVYGG 348

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLK 413
                + + L+R      H+++ T     D ++  K+ L  +     DE  R        
Sbjct: 349 ADVGGQMRELDR----GCHLLVATPGRLVDMMERGKIGLDQIKWVVLDEADRMLDMGFEP 404

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             ++        M  T   + L+ ++    +I  +         I   +  +      I 
Sbjct: 405 QIRRIVEQDT--MPKTGERQMLMFSATFPKEIQILARDFLD-NYIFLAVGRVGSTSVNIT 461

Query: 474 RLKVVLSEGKKAYWICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
           +  V + E  K  ++   +               +   +               IHG  S
Sbjct: 462 QKVVWVDENDKRSFLLDLLSATGSDSLTLVFVETKKGADSLEDFLYRDGHRATSIHGDRS 521

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             ++E  + SF+ G   +L+AT V   G+D+ +   +I  +        +H++ GR GR 
Sbjct: 522 QREREEALRSFRTGQTPILVATAVAARGLDIPNVKHVINFDMPSDIEEYVHRI-GRTGRV 580

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTE 615
             +      ++          L ++  T+
Sbjct: 581 GNLGLATSFFNDKNRNVVRDLLELIMETK 609


>gi|167756706|ref|ZP_02428833.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
 gi|237732712|ref|ZP_04563193.1| helicase [Mollicutes bacterium D7]
 gi|167702881|gb|EDS17460.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
 gi|229384207|gb|EEO34298.1| helicase [Coprobacillus sp. D7]
          Length = 535

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 69/368 (18%), Positives = 138/368 (37%), Gaps = 39/368 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           + ++ FS P+K QE AI  +L        +  I Q   G+GKTL     + + +      
Sbjct: 19  IEDMGFSKPSKIQEEAIPVLLTG------VDVIGQAQTGTGKTLAFGSVLLSKITPSQRK 72

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             QA+I++P   LA Q +E +++  +     +  + G      + + +++       II+
Sbjct: 73  LPQAIILSPTRELAMQIHEEMERIGKYNGSRITCVYGGSDIERQIRTIKK----GIDIIV 128

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++   L L  V        DE    G  + +           +L       
Sbjct: 129 GTPGRVMDLMRRNVLKLNDVKFVVLDEADEMLNMGFVEDI---------ETILEKVDDDR 179

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +T++ ++     I KI +           ++        +++    + +  +   +C  I
Sbjct: 180 QTILFSATMPAGIKKIAQNYMHDNFEHVAVLSKQTTATSVKQFYYEVKQKDRFEAMCRLI 239

Query: 493 EE------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +             +  V+      +    ++  +HG +S   + + +  FK GT   LI
Sbjct: 240 DVANVQTGIIFCRTKRSVDEVTEQMQQANYNVEAMHGDLSQNHRMNTLRKFKKGTINFLI 299

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   GIDV + + +I         + +H++ GR GR ++      +  P        
Sbjct: 300 ATDVAARGIDVENVTHVINYELPQDIESYVHRI-GRTGRADKEGQAYSIITPREKGFLRQ 358

Query: 607 RLSVLKNT 614
              V K++
Sbjct: 359 IERVTKSS 366


>gi|152969927|ref|YP_001335036.1| ATP-dependent RNA helicase DbpA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954776|gb|ABR76806.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 457

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 173/453 (38%), Gaps = 48/453 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + S T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LNELGYLSMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQHIDPARFE 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +    I + ++ G  P   +R +L+       HII+
Sbjct: 72  TQSLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  + +        R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-QTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P    I  ++ +   IE+    +S   K   +   + + +    
Sbjct: 187 WPAAIAAISGR-VQRNPQTIEINTVDALP-AIEQQFFEVSRHGKIALLQRLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+   ++++           +H++ GR  R  E    I    P  ++ +     +L+ +
Sbjct: 305 LDIKSLALVVNFELAWDPEVHVHRI-GRTARAGEQGLAISFCAPEEAQRATILADMLQLS 363

Query: 615 ED------GFLIAEEDLKQ------------RKEGEILG--IKQSGMPKFLIAQPELHDS 654
            +      G  IA    +              + G++LG      G     I +  +H +
Sbjct: 364 LNWLPAPTGNTIAPLTAEMATLCIDGGKKAKMRPGDVLGALTGDMGFDGADIGKITVHPA 423

Query: 655 --LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
              + I +  A+    Q  +   ++G+S R+ L
Sbjct: 424 HVYVAIRQNMAQKAYKQLQN-GKIKGKSCRVRL 455


>gi|91206542|sp|Q4PHU9|DBP2_USTMA RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 552

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 81/366 (22%), Positives = 138/366 (37%), Gaps = 44/366 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            P+  Q  A    L           +   + GSGKT+   +     + A        G  
Sbjct: 152 EPSAIQSQAWPMALSGRD------LVAIAETGSGKTIGFALPAMVHINAQPLLKPGDGPI 205

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q      ++  ++++    + G +P+  + + L+R     A I I T 
Sbjct: 206 ALILAPTRELANQIQVECNRFGGSSRLRTCAVYGGVPKGPQIRDLQR----GAEICIATP 261

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D +   K        L++   D     G   Q R  L Q       L+ +AT    
Sbjct: 262 GRLIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQIRPDRQTLMFSATWPKE 321

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGR--KPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            + L    L +     I  TE  A    K I  V     +  ++I  L+ + +E  K   
Sbjct: 322 VQRLAGDFLNNYAQVNIGSTELAANHNVKQIIEVCTEFEKKGKLIGHLETISAENGKVII 381

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                     S  R   +    L +    ++AI HG     +++ V+  FK+G   +++A
Sbjct: 382 F--------TSTKRVADDLTKFLRQDGWPALAI-HGDKQQQERDWVLAEFKSGRSPIMVA 432

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D S +I  +        +HQ+ GR GR     +    + P  SK++   
Sbjct: 433 TAVASRGLDVKDISYVINYDFPTNTEDYVHQI-GRTGRAGRTGTAYTYFTPENSKSAREL 491

Query: 608 LSVLKN 613
           + +L+ 
Sbjct: 492 IGILRE 497


>gi|319937738|ref|ZP_08012141.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1]
 gi|319807173|gb|EFW03787.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1]
          Length = 479

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 90/385 (23%), Positives = 156/385 (40%), Gaps = 45/385 (11%)

Query: 255 INVEGKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           +N++G+  Q  L  + +S  T+ Q + I ++ Q          I++   GSGKT    I 
Sbjct: 6   LNIDGR-IQDALEKLGYSEATEVQSAVIPELKQ------ERDVIVKAKTGSGKTAAFAIP 58

Query: 314 MAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           +  +V   E   Q +++ P   LA Q  E         +I    I G  P   + + L++
Sbjct: 59  LLDSVVWEENKPQVLVLTPTRELAIQVKEDFDNIGTYKKIKTLAIFGKQPYKFQTQDLKQ 118

Query: 371 IAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
               + H+++ T     D +Q           L+L   DE    G  + ++         
Sbjct: 119 ----KTHVVVATPGRILDHLQRGTFDASHLKYLVLDEADEMLNMGFIETVE--------- 165

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
             ++   P+ RT  L S    +  K       + P++  I     I++ IE     +   
Sbjct: 166 -KIIEKLPVKRTTCLFSATLPEEIKKLAAKFMKNPVQVNIKQSQVINQKIETYAYEVMSY 224

Query: 483 KKAYWICPQIEEKK---ESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDS 536
           +KA ++   I  +K      F    ER N +++       S+  IHG M   D+   M+ 
Sbjct: 225 EKAGFLLKLIVHEKPSSAIIFCETQERVNEVYDMLYKNGISVHKIHGGMLQTDRLENMND 284

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G  + L+AT V   GID+ + S +I  +        +H++ GR  R  +    I L 
Sbjct: 285 FRLGKVQFLVATDVAARGIDIENISHVINYDLPREAQNYIHRI-GRTARIGKAGIAISL- 342

Query: 597 HPPLSKNSYTRLSVLKN-TEDGFLI 620
              LSK+ Y R   +++ TE  F I
Sbjct: 343 ---LSKDDYKRRMCIEDYTETSFDI 364


>gi|308272111|emb|CBX28719.1| DEAD-box ATP-dependent RNA helicase cshA [uncultured
           Desulfobacterium sp.]
          Length = 548

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 78/345 (22%), Positives = 128/345 (37%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            PT  Q   I      + Q++    I+Q   G+GKT    + +   V  G    QA+I+ 
Sbjct: 34  EPTAIQVMTIP-----VMQRDDTNIIVQAQTGTGKTAAFGLPLVEMVSTGSSMVQALILV 88

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I     N  I++  I G      + + L++      HI++GT     D
Sbjct: 89  PTRELAIQVSEEINSLRGNKDIVIAPIYGGQSIDQQLRRLQK----GVHIVVGTPGRVID 144

Query: 389 SIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            +            LIL   DE    G  + ++   K T          P  RTL+ ++ 
Sbjct: 145 HLNRKTLKLEKIEHLILDEADEMLNMGFIEDIEEIMKHTN---------PDKRTLLFSAT 195

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
               I  +  K          +        + E++   +    K   +C  I+ K     
Sbjct: 196 IPQRIKDLAHKYMKGYEFL-KVKKEQLTTNLTEQIYFEVKAHDKFEALCRIIDIKDGFYG 254

Query: 497 --ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +S V+   +           IHG +S   +E  ++ FK     +L+AT V   G
Sbjct: 255 LIFCRTKSDVDSVATHLMDRGYDAEAIHGDISQAQRERTLEKFKKQRVNILVATDVAARG 314

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           IDV + + +I  +  H   A +H++ GR GR   + + I    P 
Sbjct: 315 IDVNNLTHVINYSLPHDTEAYVHRI-GRTGRAGNVGTAITFITPS 358


>gi|291165175|gb|ADD81192.1| vasa [Katsuwonus pelamis]
          Length = 643

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 126/355 (35%), Gaps = 36/355 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 229 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQQLMADGVAASRFSEL 282

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K+   T +   ++ G +  AH+ + + R  +    ++
Sbjct: 283 QEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTAHQIREISRGCN----VV 338

Query: 380 IGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L      ++DE  R                    M +    +T
Sbjct: 339 CGTPGRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEP--DMRRLVGSPGMPSKENRQT 396

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI ++         +   +  +      +E+  + +++  K   +   ++ 
Sbjct: 397 LMFSATYPEDIQRLAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLHDLLKT 456

Query: 495 ------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +           IHG     ++E  +  F++G C +L+AT
Sbjct: 457 TGMERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALTDFRSGKCPVLVAT 516

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +V   G+D+ D   ++  +  +     +H++ GR GR       +  Y P     
Sbjct: 517 SVAARGLDIPDVQHVVNFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFYDPDADGQ 570


>gi|288554498|ref|YP_003426433.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288545658|gb|ADC49541.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 502

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 74/364 (20%), Positives = 135/364 (37%), Gaps = 39/364 (10%)

Query: 268 NIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQ 323
            + F   T  Q + I   L+          I Q   G+GKT    + +   +       Q
Sbjct: 19  QMGFEEATPIQAATIPTALEGKD------IIGQAQTGTGKTGAFGVPLIDRINIENDHVQ 72

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  E + K+ +   +   ++ G      + + L      + H+++ T 
Sbjct: 73  ALILAPTRELANQVAESLFKFGKYKGVRTVVVYGGQDMRKQIRDL----KNKPHVVVATP 128

Query: 384 ALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D ++   + L  V        DE    G  + +           +L       +TL
Sbjct: 129 GRLMDHMRRKTIRLGQVETVVLDEADEMLNMGFIEDI---------ETILSEVPNERQTL 179

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I K+ +     +P    +       E IE+  V + E +K   +C  I+  
Sbjct: 180 LFSATMPKRIEKLAQTFM-SEPKLIAVKSKEVTMENIEQQYVEVHERQKFDTLCRFIDIH 238

Query: 496 K---ESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                  F     R + L E  T        IHG ++   ++SV+  FKNG   +L+AT 
Sbjct: 239 TPELAIVFGRTKRRVDELSEALTKRGYRAEGIHGDLNQAKRDSVLRKFKNGLVDVLVATD 298

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+   + +   +      + +H++ GR GR  +    +    P   ++  T   
Sbjct: 299 VAARGLDITGVTHVYNFDLPQDPESYVHRI-GRTGRAGKSGLALTFATPREREHVKTIEQ 357

Query: 610 VLKN 613
           V K 
Sbjct: 358 VSKK 361


>gi|297303643|ref|XP_001095294.2| PREDICTED: ATP-dependent RNA helicase DDX3X [Macaca mulatta]
          Length = 738

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 300 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 353

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 354 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 412

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 413 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 469

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 470 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 527

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 528 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 581

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 582 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 640

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 641 FFNERNINITKDLLDLLVE 659


>gi|260777564|ref|ZP_05886457.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605577|gb|EEX31862.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 420

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 71/375 (18%), Positives = 137/375 (36%), Gaps = 50/375 (13%)

Query: 267 RNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
             + F +PT  QE AI  +L+          +     G+GKT    + +   +       
Sbjct: 18  EKLGFDTPTPIQEQAIPHVLEGKDV------LAGAQTGTGKTAAFGLPLLNKLLDQEASR 71

Query: 321 GGQ-----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
             Q     A+++ P   LAQQ ++ +  Y    +I +    G      + + L +     
Sbjct: 72  DPQSNDVLALVVVPTRELAQQVFDSLTAYASAAEIKIVTAYGGTSMNVQTQNLRQ----G 127

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
             ++I T     D +            L+L   D     G    +           +L  
Sbjct: 128 CDVLIATPGRLLDHLYCKNINLRKTSYLVLDEADRMLDMGFMPDI---------QRILKK 178

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +TL  ++  D  I  I  K    +P++  + P N   E ++++   + + +KA  
Sbjct: 179 LNPERQTLFFSATFDKRIKTIAHKLMN-EPVEVQVTPSNSTAEKVKQMVYPVDKKRKAEL 237

Query: 488 ICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +   I  +           +   +      +      A I+G  S   ++  +D FK+GT
Sbjct: 238 LAYLIGSRNWQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGT 297

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            + LIAT V   G+D+     ++  +  +     +H++ GR GR  +    + L    +S
Sbjct: 298 IRALIATDVAARGLDINQLEQVVNFDMPYKAEDYVHRI-GRTGRAGQEGLAVSL----MS 352

Query: 602 KNSYTRLSVLKNTED 616
           K+    L  ++   D
Sbjct: 353 KDEEYLLEAIERLLD 367


>gi|219119587|ref|XP_002180550.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408023|gb|EEC47958.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 552

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 137/373 (36%), Gaps = 49/373 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM-AAAVEAGG--------- 322
           PT  Q+ ++    Q          +     GSGKT   L  +  + ++ GG         
Sbjct: 145 PTPVQKYSVPICTQGRD------LMACAQTGSGKTAGFLFPIIMSMIKRGGSDPPENARR 198

Query: 323 ----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               +A+++AP   LAQQ +E  K++T  T I   +I G      + + +ER       +
Sbjct: 199 RIYPEALVLAPTRELAQQIHEEAKRFTYATGIASVVIYGGANVGDQLREMER----GCDL 254

Query: 379 IIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT-----QKATAPHVLL 425
           ++ T     D I+  +L +  V        D     G + +++                +
Sbjct: 255 LVATPGRLVDLIERGRLGMESVSFLVLDEADRMLDMGFEPQIRRIVEESGMPGGIDRQTM 314

Query: 426 MTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           M +   P   + L    + D     +    +  K +   +  +   D+V   +K +L+  
Sbjct: 315 MFSATFPANIQRLASDFMRDYVFLTVGRVGSASKDVTQTVEFVEERDKVDALMKFLLT-- 372

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            +   I   +E K+  ++         +          IHG  S  ++E  +  FKNG  
Sbjct: 373 IQDGLILIFVETKRSCDY------VEDVLCGQGFPACSIHGDKSQREREDALRYFKNGNT 426

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L AT+V   G+D+ + + ++  +        +H++ GR GR     + +   +   S 
Sbjct: 427 PILCATSVAARGLDIPNVTQVVNYDLPSNIDDYVHRI-GRTGRAGNTGAALSFINESNSG 485

Query: 603 NSYTRLSVLKNTE 615
                  +L   E
Sbjct: 486 VVRELRDLLDENE 498


>gi|217964610|ref|YP_002350288.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HCC23]
 gi|217333880|gb|ACK39674.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HCC23]
 gi|307570824|emb|CAR84003.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
          Length = 470

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 137/370 (37%), Gaps = 38/370 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  ++ +  + ++  T  Q++ I   L           + +   GSGKT    I +A  
Sbjct: 7   SEEIKRAINELGYTEATPVQKAVIPVALTGED------IVAKSQTGSGKTAAFAIPIAEQ 60

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+I+ P   LA Q         +  ++    I G  P A ++  L +    
Sbjct: 61  VEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKN-- 118

Query: 375 QAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
             HI++GT     D I+           L+L  VDE    G   ++   L++       L
Sbjct: 119 --HIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNL 176

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             +AT       L      D   I        PI  V +  +  ++ ++   V+++E   
Sbjct: 177 FFSATMPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQTDNKEKTLKD--VLITENPD 234

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +  I    + +            + L +      + IHG +   D+   MD FK+G  + 
Sbjct: 235 SAIIFCNTKNQ-----------VDELTDLLDVKASKIHGGLRQEDRFRAMDDFKSGKSRF 283

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   GIDV + S++I  +        +H++ GR GR  +    I       +   
Sbjct: 284 LIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRI-GRTGRAGKSGKAISFVKTNENPLL 342

Query: 605 YTRLSVLKNT 614
                +L  T
Sbjct: 343 RDIEEMLDVT 352


>gi|323340095|ref|ZP_08080360.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
 gi|323092472|gb|EFZ35079.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
          Length = 506

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 128/346 (36%), Gaps = 35/346 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAV 325
            F   T  QE+ I  +L  +        I Q   G+GKT    + +   V   E   QA+
Sbjct: 29  GFEEATPIQEATIPLVLAGIDV------IGQAQTGTGKTAAFGLPILQHVDVKEEHIQAI 82

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +++P   LA Q  E + +  ++ +  V+++ G      + K L+ +      I++GT   
Sbjct: 83  VVSPTRELAIQTQEELYRLGKDKRAKVQVVYGGADIRRQIKLLKHV----PQILVGTPGR 138

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--R 433
             D I            L+L   DE    G        +         LL +AT     R
Sbjct: 139 LLDHINRKTVDLSHVKTLVLDEADEMLDMGFLEDIEAIIKNVPEERQTLLFSATMPKAIR 198

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           ++    + +  + KI  K      +    +     ++     +++  +  +   +  +  
Sbjct: 199 SIGEKFMHEPQVVKIKAKELTTDLVDQYFVKAREYEKFDIMTRILDVQAPELTIVFGRT- 257

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+  +   E    + A IHG ++   + +++  FK G   +L+AT V   
Sbjct: 258 -------KRRVDELSKGLEARGYNAAGIHGDLTQQRRMNILKKFKEGRLDILVATDVAAR 310

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+   + +   +      + +H++ GR GR       +    P 
Sbjct: 311 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGHHGISVTFVTPN 355


>gi|254176272|ref|ZP_04882930.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei ATCC 10399]
 gi|160697314|gb|EDP87284.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei ATCC 10399]
          Length = 476

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 169/461 (36%), Gaps = 62/461 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 34  LAQLGYTDMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARRFD 87

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    + V  + G  P   + ++LE      AHII+
Sbjct: 88  VQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIIV 143

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 144 GTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQ------CPPTRQTL 197

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   +   
Sbjct: 198 LFSATYPDGIAKLSQQFLRHP--KRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHY 255

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 256 RPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATD 315

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 316 VAARGLDIAQLEAVINVDVTPDPEVYVHRI-GRTGRADQDGWALSLASMNEMGRVGGIEQ 374

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILGIKQSGMPKFLIAQP 649
            L    +   +A              E L+           G++LG   +G   F  AQ 
Sbjct: 375 ALAREVEWHPLAELKAGGDAPLLPPMETLQILGGRKDKIRPGDVLGAL-TGDAGFSGAQI 433

Query: 650 -----ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                    + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 434 GKINVTEFSTYVAVERGIARDALRKL-NAGKIKGKRVKVRL 473


>gi|308184052|ref|YP_003928185.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180]
 gi|308059972|gb|ADO01868.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180]
          Length = 492

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ + + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|225559706|gb|EEH07988.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           capsulatus G186AR]
          Length = 1201

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 96/521 (18%), Positives = 180/521 (34%), Gaps = 76/521 (14%)

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           G+ K   ++  +  P  IF +  D++   I+                   EA   L    
Sbjct: 463 GRNKTNFSKSQLSKPEAIFGDEDDIDMKAIDP------------------EADDFLA--- 501

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL--AGQIALLLMR 244
             I     +KK  P +      ++     K+F         L  +E+     ++  + +R
Sbjct: 502 --ITSKGRKKKDLPPVNH--EKMNYEPFRKNFYTEPVDLAELTEEEVAALRLELDGIKVR 557

Query: 245 KQFKKEIGIPINVEGKIAQKI--LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGD 301
                +     +  G   Q +  +R + +  PT  Q  AI  I+           I    
Sbjct: 558 GVDVPKPVQKWSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDV------IGVAK 611

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+  L+ M   +          G   +IM P   LA Q ++  K + +   +   
Sbjct: 612 TGSGKTIAFLLPMFRHIMDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALNLRAV 671

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
              G  P   +   L+R     A II+ T     D +           ++  V++DE  R
Sbjct: 672 CAYGGAPIKDQIAELKR----GAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADR 727

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                             +L    P  +T++ ++    ++  +  K    KP++ ++   
Sbjct: 728 MFDMGFEPQVM------RILGNVRPQRQTVLFSATFPRNMEALARKTLA-KPVEIIVGGK 780

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---------FRSVVERFNSLHEHFTS 516
           + +   I ++  V ++  K   +   + E    +         F    E  + L      
Sbjct: 781 SVVAPEITQIVEVRNQDTKFVRLLALLGELYADDKNEDARALIFVDRQEAADGLLRDLMH 840

Query: 517 S---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  IHG    +D++S +D FK G   +LIAT+V   G+DV    +++  +A +   
Sbjct: 841 KGYPCMSIHGGKDQVDRDSTIDDFKAGVFPILIATSVAARGLDVKQLKLVVNYDAPNHLE 900

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
             +H+  GR GR     + +        + S      LK +
Sbjct: 901 DYVHR-AGRTGRAGNTGTAVTFLTEDQERYSVDISKALKQS 940


>gi|241958200|ref|XP_002421819.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223645164|emb|CAX39763.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 557

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 139/381 (36%), Gaps = 44/381 (11%)

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            +  + +   +  P  PT  Q       L        M+ I     GSGKTL   +    
Sbjct: 125 PDYVLQEVKDQGFP-KPTAIQCQGWPMAL----SGRDMIGI--AATGSGKTLSYCLPSIV 177

Query: 317 AVEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
            + A  Q         +++AP   LA Q      K+ ++++I    + G  P+  + + L
Sbjct: 178 HINAQPQLQYGDGPIVLVLAPTRELAVQIQTECAKFGKSSRIRNTCVYGGAPKGPQIRDL 237

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKA 418
            R       I I T     D ++  K        L+L   D     G + +++    Q  
Sbjct: 238 AR----GVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 293

Query: 419 TAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVI 472
                L+ +AT     + L    L D     I           T    VI   ++ D ++
Sbjct: 294 PDRQTLMWSATWPKEVQQLARDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLV 353

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           + L+  L+E +    +         S  R+  E    L      ++AI HG     +++ 
Sbjct: 354 KHLESALNERENKILVF-------ASTKRTCDEITTYLRSDGWPALAI-HGDKDQSERDW 405

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           V+D F+ G   +++AT V   GIDV   + +I  +        +H++ GR GRG    + 
Sbjct: 406 VLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRI-GRTGRGGASGTA 464

Query: 593 ILLYHPPLSKNSYTRLSVLKN 613
           I  +    SK       +++ 
Sbjct: 465 ISFFTDGNSKLGGDLCKIMRE 485


>gi|121715524|ref|XP_001275371.1| RNA helicase (Dbp), putative [Aspergillus clavatus NRRL 1]
 gi|134034064|sp|A1C6C4|DBP2_ASPCL RecName: Full=ATP-dependent RNA helicase dbp2
 gi|119403528|gb|EAW13945.1| RNA helicase (Dbp), putative [Aspergillus clavatus NRRL 1]
          Length = 549

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 84/434 (19%), Positives = 152/434 (35%), Gaps = 55/434 (12%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-- 269
           P+  K F    P     +  E+           K   +   +P  VE        + +  
Sbjct: 83  PKFEKSFYKEHPDVTARSQREVDEF----RQEHKMTVQGKNVPRPVETFDEAGFPQYVLS 138

Query: 270 -----PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
                 F  PT  Q       L           +   + GSGKTL   +     + A   
Sbjct: 139 EVKSQGFERPTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPL 192

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +++AP   LA Q    I K+ ++++I    + G +P+  + + L R     
Sbjct: 193 LAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDLSR----G 248

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLL 425
             + I T     D ++  +        L+L   D     G   Q R  ++Q        +
Sbjct: 249 VEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCM 308

Query: 426 MTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLKVVL 479
            +AT     R L    L D     I           T    V+    + D++I+ L+ ++
Sbjct: 309 WSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIM 368

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +      I            R   E    L +    +++I HG     +++ V++ FK 
Sbjct: 369 EDRSNKILIFT-------GTKRIADEITRFLRQDGWPALSI-HGDKQQQERDWVLNEFKA 420

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +++AT V   GIDV D + ++  +  +     +H++ GR GR     + I  +   
Sbjct: 421 GKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRI-GRTGRAGAKGTAITFFTTD 479

Query: 600 LSKNSYTRLSVLKN 613
            SK +   +++L  
Sbjct: 480 NSKQARDLVTILTE 493


>gi|15668850|ref|NP_247653.1| DEAD-box ATP dependent DNA helicase [Methanocaldococcus jannaschii
           DSM 2661]
 gi|2500540|sp|Q58083|H669_METJA RecName: Full=Probable ATP-dependent RNA helicase MJ0669
 gi|1591383|gb|AAB98663.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 367

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 86/358 (24%), Positives = 134/358 (37%), Gaps = 44/358 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAP 329
            PT  Q   I   L D         + Q   GSGKT    I +   V    G +A+I+ P
Sbjct: 28  KPTDIQMKVIPLFLNDEYN-----IVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I+    N  + +  I G      + KAL+      A+I++GT     D 
Sbjct: 83  TRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDH 137

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLTS 439
           I    L L  V        DE    G  + +   L        +LL +AT     L L  
Sbjct: 138 INRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAK 197

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               D S I  K                I+  IE+  V ++E ++   +C  ++ K+   
Sbjct: 198 KYMGDYSFIKAK----------------INANIEQSYVEVNENERFEALCRLLKNKEFYG 241

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +   +   S+          IHG +S   +E V+  FK    ++LIAT V+  G
Sbjct: 242 LVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRG 301

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           IDV D + +I  +      + +H++ GR GR  +    I + +    K        +K
Sbjct: 302 IDVNDLNCVINYHLPQNPESYMHRI-GRTGRAGKKGKAISIINRREYKKLRYIERAMK 358


>gi|291165173|gb|ADD81191.1| vasa [Euthynnus affinis]
          Length = 640

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 125/355 (35%), Gaps = 36/355 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 226 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQQLMADGVAASRFSEL 279

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K+   T +   ++ G +   H+ + + R  +    ++
Sbjct: 280 QEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREISRGCN----VV 335

Query: 380 IGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L      ++DE  R                    M +    +T
Sbjct: 336 CGTPGRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEP--DMRRLVSSPGMPSKENRQT 393

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI ++         +   +  +      +E+  + +++  K   +   ++ 
Sbjct: 394 LMFSATYPEDIQRLAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKT 453

Query: 495 ------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +           IHG     ++E  +  F++G C +L+AT
Sbjct: 454 TGMERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVAT 513

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +V   G+D+ D   ++  +  +     +H++ GR GR       +  Y P     
Sbjct: 514 SVAARGLDIPDVQHVVNFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFYDPDADGQ 567


>gi|148975453|ref|ZP_01812324.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
 gi|145964881|gb|EDK30132.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
          Length = 423

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 140/384 (36%), Gaps = 43/384 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + F+ PT  QE AI  +L+          +     G+GKT    + +   + A    
Sbjct: 21  LSELNFTAPTSVQEQAIPLVLEGKDV------LAGAQTGTGKTAAFGLPIIQRLLATKDN 74

Query: 323 --------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                   +A+++ P   LAQQ ++ +  Y + T + V +  G +    +   L      
Sbjct: 75  VIPNPKLVRALVLVPTRELAQQVFDNVTSYAKGTDLKVVVAYGGVSMKVQTDNLRA---- 130

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            A I++ T     D +    ++L    E        R+           +L     + +T
Sbjct: 131 GADILVATPGRLIDHMFTKNIMLSQ-TEVLVLDEADRMLDMGFMPDIKRILSRMNEVRQT 189

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L  ++  D  I  I  +   + P +  + P N   E ++++   + + +K+  +   I  
Sbjct: 190 LFFSATFDNKIKAIAHR-MMQSPSEIQVTPTNSTAETVKQMVYPVDKKRKSELLAYLIGS 248

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +      +      A I+G  S   ++  +D FK+G  + LIAT
Sbjct: 249 NNWQQVLVFTKTKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIAT 308

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+     ++  +  +     +H++ GR GR       I L    +S +    L
Sbjct: 309 DVAARGIDIQQLEQVVNYDMPYKAEDYVHRI-GRTGRAGNSGLAISL----MSHDEAYLL 363

Query: 609 SVLKNTED---------GFLIAEE 623
             ++   D         GF  + E
Sbjct: 364 GAIERLLDTRLPQEWLKGFEPSPE 387


>gi|149189294|ref|ZP_01867580.1| DNA and RNA helicase [Vibrio shilonii AK1]
 gi|148836853|gb|EDL53804.1| DNA and RNA helicase [Vibrio shilonii AK1]
          Length = 477

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 69/374 (18%), Positives = 145/374 (38%), Gaps = 37/374 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           ++++ +   +  QE AI  I++          +     G+GKT    + +   + +G + 
Sbjct: 16  IQDLGYEKASPIQEQAIPAIIEGKDV------MAAAQTGTGKTAGFALPLLERLNSGQRV 69

Query: 324 ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                 A+I+ P   LA Q +E + KY+ N  +  + + G +    +   L +       
Sbjct: 70  KGNHIRALILTPTRELAAQVHESVFKYSTNLPLTSQCVFGGVKINPQMLKLRK----GCD 125

Query: 378 IIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +++ T     D     +I++ +L ++++DE  R      L +        +L +   P  
Sbjct: 126 VMVATPGRLLDLYQQNAIKFSQLEVLVLDEADRM-----LDMGFFRDIKKILDLL--PKN 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R  +L S    +  +   K     PI+  + P N   +++E+   V  + +K   +   I
Sbjct: 179 RQNLLFSATFSNEIRDLAKGLVNNPIEVSVTPPNSTTKLVEQSLYVTDKKQKPAMLAKLI 238

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           ++            +    R     E    +   IHG  S   +   ++ FK G  ++L+
Sbjct: 239 DDGSWKQVLVFCKTKHGANRLARFLEGKKITALAIHGNKSQGARTKALEHFKTGQIRVLV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT +   G+D+     ++  +  H     +H++ GR GR  E      L     +K  + 
Sbjct: 299 ATDIAARGLDIPQLPQVVNFDLPHVSEDYVHRI-GRTGRAGETGKAYSLVCADEAKELFG 357

Query: 607 RLSVLKNTEDGFLI 620
              ++    D F +
Sbjct: 358 IERLIGKLIDRFEL 371


>gi|195399942|ref|XP_002058578.1| GJ14499 [Drosophila virilis]
 gi|194142138|gb|EDW58546.1| GJ14499 [Drosophila virilis]
          Length = 733

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 134/378 (35%), Gaps = 41/378 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           SPT  Q       +           +     GSGKTL  ++     +          G  
Sbjct: 304 SPTPIQAQGWPIAMSG------ANFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGEGPI 357

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  ++ +    + G  P+  + + L+R       I+I T 
Sbjct: 358 ALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE----IVIATP 413

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     S    +   +++DE  R          +K  +         P  +TL+ +
Sbjct: 414 GRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR------PDRQTLMWS 467

Query: 439 SLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    ++ ++ E   G      +    +   + I +V++       E K    +    + 
Sbjct: 468 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEDKLKSLLSDIYDT 527

Query: 495 KKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           +  V+        F      IHG  S  +++ V+  F++G   +L+A
Sbjct: 528 SENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 587

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV     +I  +        +H++ GR GR     +    +    +K +   
Sbjct: 588 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRI-GRTGRSNTKGTSFAFFTKNNAKQAKAL 646

Query: 608 LSVLKNTEDGFLIAEEDL 625
           + VL+        A E+L
Sbjct: 647 VDVLREANQEINPALENL 664


>gi|317010528|gb|ADU84275.1| ATP-dependent RNA helicase [Helicobacter pylori SouthAfrica7]
          Length = 494

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 130/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  ILQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 44  SPSPIQEKAIPAILQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 97

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 98  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 153

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 154 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 203

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---K 496
                I ++ +K     PIK  I P N  +  I +   V++E +++  I   ++ +   K
Sbjct: 204 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMRLLDTQAPEK 261

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+   S       +HG M   D+ + + +FK     +L+AT V   
Sbjct: 262 SIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 321

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 322 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 365


>gi|224083374|ref|XP_002307002.1| predicted protein [Populus trichocarpa]
 gi|222856451|gb|EEE93998.1| predicted protein [Populus trichocarpa]
          Length = 895

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 84/422 (19%), Positives = 162/422 (38%), Gaps = 54/422 (12%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIM 327
            Q  A+  I+           I     GSGKTL  ++ M   ++         G   +IM
Sbjct: 281 IQAQALPIIMSGRD------CIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGEGPIGLIM 334

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   L QQ +  I+K+T+   I    + G    A +   L+R       I++ T     
Sbjct: 335 APTRELVQQIHSDIRKFTKALGIRCVPVYGGSGVAQQISELKRGTE----IVVCTPGRMI 390

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D +           ++  +++DE  R           +            P  +T++ ++
Sbjct: 391 DILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR------PDHQTVLFSA 444

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI----EEK 495
                +  +  K    KP++  +   + +++ I +L  V  EG++ + +   +    E+ 
Sbjct: 445 TFPRQVETLARKVLN-KPVEIQVGGRSVVNKDINQLVEVRPEGERWFRLLELLGVWSEKG 503

Query: 496 KESNFRSVVERFNSLHEH---FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           K   F    ++ ++L      F      +HG     D+ES +  FK+  C LLIAT+V  
Sbjct: 504 KILVFVQSQDKCDALFRDLLKFGHPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 563

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV D  ++I  +  +     +H++ GR GR       I  +    ++ +   +  L+
Sbjct: 564 RGLDVKDLELVINYDVPNHYEDYVHRV-GRTGRAGRKGCAITFFSEDDARYAPDLVKALE 622

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQS---------GMPKFLIAQPELHDSLLEIARKDA 663
            +E    +  +DLK   +G ++ + Q          G   F     E  +  +   +  A
Sbjct: 623 LSE---QVVPQDLKALADGFMVKVNQGLEQAHGTGYGGSGFKF-NEEEDEKRMAAKKAQA 678

Query: 664 KH 665
           + 
Sbjct: 679 RE 680


>gi|187479233|ref|YP_787258.1| ATP-dependent RNA helicase [Bordetella avium 197N]
 gi|115423820|emb|CAJ50371.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
          Length = 477

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 138/363 (38%), Gaps = 40/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
           SPT  Q  AI  + +          +     G+GKT    + +   +             
Sbjct: 37  SPTPIQAQAIPVVAEGRDV------MGAAQTGTGKTAAFTLPILHRLMPLANSSASPARH 90

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q YE +K+Y+ +T +   ++ G +    +++AL +       +++
Sbjct: 91  PVRALILTPTRELADQVYENVKRYSLHTPLRSAVVFGGVDIGPQKEALRQGCE----VLV 146

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D ++   + L  V     DE  R      L   +       ++    P  + L
Sbjct: 147 ATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLE------RIIRLLPPQRQGL 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I K+       +P++  +   N   + + ++   ++   K   +   ++ +
Sbjct: 201 LFSATFSNEIRKLGRSYLN-QPVEIEVAARNATADTVTQIAYQMTGEAKRAAVVHLVKSR 259

Query: 496 ------KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   SN +    R     E        IHG  S  D+   +++FK G  ++L+AT 
Sbjct: 260 GLKQVIVFSNTKIGTARLARQLELDGVKAESIHGDKSQADRMKALEAFKAGELEVLVATD 319

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV     +I  +  +     +H++ GR GR       I L+ P   +       
Sbjct: 320 VAARGLDVAGVPCVINYDLPYNAEDYVHRI-GRTGRAGASGEAIALFTPEEERYLLDIEK 378

Query: 610 VLK 612
           ++K
Sbjct: 379 LIK 381


>gi|157126319|ref|XP_001654592.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882564|gb|EAT46789.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 699

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 79/364 (21%), Positives = 131/364 (35%), Gaps = 35/364 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q   +   L        M+ I Q   GSGKTL  +      +          G  
Sbjct: 144 KPTAIQAQGMPIAL----SGRDMVGIAQ--TGSGKTLAYIAPALVHITHQDQLRRGDGPI 197

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +    + Q        + G  P+  + + LER     A I+I T 
Sbjct: 198 ALVLAPTRELAQQIQQVATDFGQRINANNTCVFGGAPKGPQIRDLER----GAEIVIATP 253

Query: 384 ALFQDSIQYY--------KLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 254 GRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDRQVLMWSATWPKE 313

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L    L D     I             I+ +    E  ++L  +L+E         +
Sbjct: 314 VRNLAEEFLNDYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLLTEISAE----NE 369

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +       +  V+               IHG  S  +++ V+++F+NG   +L+AT V 
Sbjct: 370 TKTIIFVETKRRVDDITRNINRNGWRAVSIHGDKSQQERDYVLNAFRNGRQGILVATDVA 429

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D   +I  +        +H++ GR GR     +   L+    +  +   ++VL
Sbjct: 430 ARGLDVEDVKFVINYDYPSNSEDYVHRI-GRTGRSNNTGTAYTLFTNSNANKAGDLINVL 488

Query: 612 KNTE 615
           +   
Sbjct: 489 REAN 492


>gi|307182555|gb|EFN69748.1| ATP-dependent RNA helicase bel [Camponotus floridanus]
          Length = 692

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 67/389 (17%), Positives = 137/389 (35%), Gaps = 49/389 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQ------- 323
            PT  Q+ AI  I+       R   +     GSGKT   L+ +   + E+G +       
Sbjct: 230 KPTPVQKYAIPIII------GRRDVMACAQTGSGKTAAFLVPILNQIYESGPRPPPVQAN 283

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                      +++AP   LA Q Y+  +K+   +++   ++ G      + + L+R   
Sbjct: 284 SSGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGSNIVDQMRELDR--- 340

Query: 374 GQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+++ T     D +   K+ L     +++DE  R          Q         M  
Sbjct: 341 -GCHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEP--QIRRIVQEDNMPP 397

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++    +I  +  +      I   +  +    E I +  V + E  K  ++
Sbjct: 398 TGERQTLMFSATFPKEIQMLA-RDFLSNYIFLAVGRVGSTSENITQKIVWVEEHDKRSYL 456

Query: 489 CPQIEEKKESNF------------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              ++    S+             +   +            +  IHG  +  ++E  +  
Sbjct: 457 LDLLQASNFSDPSAESLTLVFVETKKGADMLEEYLATMGYPVTSIHGDRTQREREEALRR 516

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G   +L+AT V   G+D+     +I  +        +H++ GR GR   +      +
Sbjct: 517 FRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRI-GRTGRMGNLGLATSFF 575

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           +          +S+L           +D+
Sbjct: 576 NHKNHNLVRDLVSLLIEANQELPPWLDDM 604


>gi|307319802|ref|ZP_07599226.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|306894533|gb|EFN25295.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
          Length = 504

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 132/373 (35%), Gaps = 49/373 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  AI  +L+D         I     G+GKT    + M   + A G+        
Sbjct: 24  KPTPIQAQAIPLVLKDHD------LIGLAQTGTGKTAAFGLPMIEKLVADGRRPDPRNIR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   L  Q    +K + + + + + ++ G +    + + L R       I++ T 
Sbjct: 78  ALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQLAR----GVDILVATP 133

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +            L+L   D+    G    L+   K    +          +TL
Sbjct: 134 GRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKN---------RQTL 184

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+++  +     P+K  + P  +  + +E+    +        I  Q    
Sbjct: 185 LFSATMPKLIAELAGEYLT-DPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTA 243

Query: 496 KES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   E+     +H     A IHG  S   +E  + +F++G  ++L+AT
Sbjct: 244 NPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+   + +   +      A +H++ GR  R       I    P   +      
Sbjct: 304 DVAARGIDIPGVTHVYNYDLPEVPDAYVHRI-GRTARNGRDGIAIAFCAPDEIRLLRDIE 362

Query: 609 SVLKNTEDGFLIA 621
            ++     G  IA
Sbjct: 363 KLM-----GIQIA 370


>gi|16264922|ref|NP_437714.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
 gi|15141061|emb|CAC49574.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
          Length = 503

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 132/373 (35%), Gaps = 49/373 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  AI  +L+D         I     G+GKT    + M   + A G+        
Sbjct: 24  KPTPIQAQAIPLVLKDHD------LIGLAQTGTGKTAAFGLPMIEKLVADGRRPDPRNIR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   L  Q    +K + + + + + ++ G +    + + L R       I++ T 
Sbjct: 78  ALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQLAR----GVDILVATP 133

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +            L+L   D+    G    L+   K    +          +TL
Sbjct: 134 GRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKN---------RQTL 184

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+++  +     P+K  + P  +  + +E+    +        I  Q    
Sbjct: 185 LFSATMPKLIAELAGEYLT-DPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTA 243

Query: 496 KES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   E+     +H     A IHG  S   +E  + +F++G  ++L+AT
Sbjct: 244 NPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+   + +   +      A +H++ GR  R       I    P   +      
Sbjct: 304 DVAARGIDIPGVTHVYNYDLPEVPDAYVHRI-GRTARNGRDGIAIAFCAPDEIRLLRDIE 362

Query: 609 SVLKNTEDGFLIA 621
            ++     G  IA
Sbjct: 363 KLM-----GIQIA 370


>gi|261415437|ref|YP_003249120.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371893|gb|ACX74638.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 486

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 131/348 (37%), Gaps = 37/348 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  QE +I  +L+          +     G+GKT    + +   +   G        +
Sbjct: 23  TPTPIQERSIPSLLEGKD------LLGIAQTGTGKTAAFALPILQRLLDSGKFRSPKTCR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  +  ++Y Q T I    I G +    +++ L R       +++ T 
Sbjct: 77  ALILLPTRELAIQVEDCFREYAQFTAISTACIFGGVNDNPQKQKLIR----GVDVLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     +I   KL   ++DE  R      +   +K      ++       + L  +
Sbjct: 133 GRLLDLIGQKAISLKKLEFFVLDEADRMLDMGFIHDIRK------VVAMLPQDRQNLFFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    +ISK+        P++  + P +   E I +    + + +K   +   + E  E 
Sbjct: 187 ATMPEEISKLAATILRPNPVRVEVAPQSTPIERIRQELYRIDKRRKGALLKELLAEHPEM 246

Query: 499 NF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   ++   + E      A IHG  S   ++  + +FK    ++L+AT + 
Sbjct: 247 KKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQIRVLVATDIA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             GIDV D S +   +  +     +H++ GR  R  +    I    P 
Sbjct: 307 ARGIDVDDVSHVFNYDLPNEHETFVHRI-GRTARAGKEGVAISFCSPD 353


>gi|227824325|ref|ZP_03989157.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21]
 gi|226904824|gb|EEH90742.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21]
          Length = 444

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 75/345 (21%), Positives = 139/345 (40%), Gaps = 34/345 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT  QE AI  +LQ          I +   G GKTL  ++ +   +       QA+I++P
Sbjct: 56  PTPVQERAIPALLQGRDV------ICRAQTGVGKTLSFVVPLFTKITEVKTFVQALILSP 109

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ    IKK    T + V  ++G       R+ L      +A++++GT     D 
Sbjct: 110 TRELAQQTAGEIKKLADGTPVRVLAVSGGKDYDEERRKLGN----KANVLVGTPGRLLDH 165

Query: 390 IQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP--RTLVL 437
           ++           L+L  VDE  R G  + ++  L+        ++ +AT     R L  
Sbjct: 166 LRKGNTSLGGITYLVLDEVDEMLRQGFGEDIETLLSLMPQPHQTMMCSATLDEEVRKLGK 225

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
               +  +  I  K A    I  V I ++   +  E     + +    + +    + K+ 
Sbjct: 226 MITKNPRLIDIDPKEATASTIHQVCIKVSEDHK--EEALQTIIDRCNPFLMLVFCKSKE- 282

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                 +E ++ L+     +  ++HG MS   +   M+ F+    ++L+A+ +   G+DV
Sbjct: 283 ----RAIEVYDWLYGKG-FNADVLHGDMSQQKRRQAMERFRKAKTQILVASDIAARGLDV 337

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
              + ++  +  H     +H++ GR GR       I  Y    ++
Sbjct: 338 EGVTQVVNFDIPHDPDWYVHRI-GRTGRAGNEGEAITFYTADETR 381


>gi|225159079|ref|ZP_03725387.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
 gi|224802337|gb|EEG20601.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
          Length = 451

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 134/362 (37%), Gaps = 28/362 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIM 327
            PT  Q  AI  +L           +     G+GKT    + + A +      G + +++
Sbjct: 23  DPTPVQLRAIPVVLAGRD------LVASAQTGTGKTAAFALPVLARLGGHRPGGPRVLVL 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   L  Q     + + + T +   II G +    +R  L         I+I T     
Sbjct: 77  EPTRELGAQVETAFRDFGRFTDVRSTIIHGGVGYGKQRSDLRA----GTDIVIATVGRLM 132

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D I+  ++ L  V E        R+           ++       +TL  ++    +I  
Sbjct: 133 DFIKEKEIRLDSV-EVLILDEVDRMLDMGFINDVKRIVGLCPKQRQTLFFSATIPPEIED 191

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------NFR 501
           +  + A + P +  I     ++E ++     ++  +K   +C  +++            +
Sbjct: 192 VA-RFALQNPERIEIGRARTVNESVKHAIYPVTFEQKFDLLCAILDKLDYESVIIFSRTK 250

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              +R     +    S+A++H   S   +   ++ FKNG  ++++AT +   GIDV   S
Sbjct: 251 HGADRIARRLKSKKHSVAVLHANRSQNQRVEALEGFKNGRYEVMVATDIAARGIDVAGVS 310

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK-----NTED 616
            +I  +        +H++ GR GR   +    +L  P  + + +     +       T D
Sbjct: 311 HVINYDVPENPEDYVHRI-GRTGRAMAVGDAFMLVTPDEAGDVHDIQRFIGAKIPFQTLD 369

Query: 617 GF 618
           GF
Sbjct: 370 GF 371


>gi|112983588|ref|NP_001037347.1| vasa-like [Bombyx mori]
 gi|1944405|dbj|BAA19572.1| BmVLG [Bombyx mori]
          Length = 601

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 135/351 (38%), Gaps = 37/351 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q++AI  I   MS ++ M        GSGKT   L+ +   +             
Sbjct: 202 KPTPIQKNAIPII---MSGRDLM---GCAQTGSGKTAAFLVPIINMLLQDPKDLISENGC 255

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q +I++P   L  Q +   +K++  + + V +  G     H+   + R      HI+
Sbjct: 256 AQPQVIIVSPTRELTLQIFNEARKFSYGSVLKVAVAYGGTAVRHQGDNIAR----GCHIL 311

Query: 380 IGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T     D ++     +  +  V++DE  R      +   +K      ++   T   +T
Sbjct: 312 VATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLHPTMVE--TTKRQT 369

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI  +  +      +   +  +      +E++ + +++ +K   +   IEE
Sbjct: 370 LMFSATFPEDIQHLAGRFLN-NYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLIEE 428

Query: 495 KKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   ++        + IHG     ++E  + +FK+G   +L+AT
Sbjct: 429 NDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVAT 488

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            V   G+D+ +  I++  +        +H++ GR GR       +  Y   
Sbjct: 489 AVAARGLDIKNVDIVVNYDLPKSIDEYVHRI-GRTGRVGNRGKAVSFYDSD 538


>gi|307131092|ref|YP_003883108.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306528621|gb|ADM98551.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 457

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 167/458 (36%), Gaps = 58/458 (12%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + + T  Q +A+  IL     +       Q   GSGKT    + +   ++AG   
Sbjct: 18  LNELGYLTMTPIQAAALPAILAGKDVR------AQAKTGSGKTAAFGLGLLQQLDAGQFN 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +    I V  + G +P + +R +L        HII+
Sbjct: 72  TQSLVLCPTRELADQVANELRRLARYLPNIKVLTLCGGVPFSIQRDSLIHA----PHIIV 127

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATP 430
            T     D ++           L+L   D     G        +         LL +AT 
Sbjct: 128 ATPGRLLDHLKKETVSLDALQTLVLDEADRMLDMGFADAIDEVIAHVPAQRQTLLFSATW 187

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
                 ++     D   I        P              I+ L+ +LS  + A  +  
Sbjct: 188 PDAIAAISHRIQRDPLTIAIDTVDELPAIEQQFYEVSRSGKIDLLQKLLSREQPASCVV- 246

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  +  +     +++L +    S+  +HG M   D++  +  F NG+ ++L+AT V
Sbjct: 247 -----FCNTKKDCQAVYDALTDS-NQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDV 300

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+    ++I           +H++ GR  R  E    I L  P  ++ +     +
Sbjct: 301 AARGLDIKALEMVINYELSWDPEVHIHRI-GRTARAGESGLAISLCAPEEAQRANALEEM 359

Query: 611 LK------NTEDGFLIAEED-------------LKQRKEGEILG--IKQSGMPKFLIAQP 649
           L       +   G  I   +              K R  G+ILG      G+    I + 
Sbjct: 360 LNMKLNWHSLPTGLRITPLEATMATLCIDGGKKAKMR-PGDILGALTGDMGLDGADIGKI 418

Query: 650 ELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            +H   + + + +  A+H   Q      ++G+++++ L
Sbjct: 419 TIHPMHAYVAVKQSVARHAWKQL-QQGKIKGKAVKVRL 455


>gi|238791786|ref|ZP_04635423.1| ATP-independent RNA helicase dbpA [Yersinia intermedia ATCC 29909]
 gi|238728890|gb|EEQ20407.1| ATP-independent RNA helicase dbpA [Yersinia intermedia ATCC 29909]
          Length = 460

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 181/460 (39%), Gaps = 60/460 (13%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + ++  T  Q +A+  IL     +       +   GSGKT    I +   +  G   
Sbjct: 19  LNELGYTEMTPVQAAALPAILNGQDVR------AKAKTGSGKTAAFGIGLLDKIAVGEFV 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  + TQ I +  + G  P  H+  +L        HI++
Sbjct: 73  TQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHA----PHIVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L+L  + +        R+       A   ++    P  +TL+ ++ 
Sbjct: 129 GTPGRIQEHLRKKTLVLDDL-KILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
             + I +I+ +   R+PI   +   + +   IE++    +  K+   +   +   +    
Sbjct: 188 YPVGIERISAR-VQRQPINVEVDDGDEVP-AIEQVFFETTREKRLPLLISVLSHYQPSSC 245

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +      E    S+  +HG +   D++ V+  F N +C++L+AT V   G
Sbjct: 246 VVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---------------- 598
           +D+ D ++++           +H++ GR GR       + L  P                
Sbjct: 306 LDIKDLALVVNFELAFDPEVHVHRI-GRTGRAGMSGLAVSLCTPQEMSRAHAIEDYLQIK 364

Query: 599 ---------PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG--IKQSGMPKFLIA 647
                      S N+     ++    DG   A    K R  G+ILG    ++G+    + 
Sbjct: 365 LKWTPAEPVSRSANAMLEPEMVTLCIDGGRKA----KIR-PGDILGALTGEAGLTAADVG 419

Query: 648 QPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           + ++    + + I +  AK  L Q      ++G++ +  L
Sbjct: 420 KIDMFPVHAYVAIRKASAKRALQQL-QQGKIKGKNCKSRL 458


>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 504

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 137/373 (36%), Gaps = 44/373 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q +AI  +LQ          +     G+GKT    + +   + A            
Sbjct: 39  PTPIQAAAIPVVLQGRDV------MGAAQTGTGKTAGFSLPIIQLLLANASNSASPARHP 92

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q  E +K Y ++T +   ++ G M  A +  AL         I+I 
Sbjct: 93  VRALILTPTRELADQVAENVKAYCRHTPLRSTVVFGGMDMAPQTAALRA----GVEIVIA 148

Query: 382 THALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPI 431
           T     D +Q   L L       +DE  R      L   Q+           L+ +AT  
Sbjct: 149 TPGRLLDHVQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKKRQNLMFSATFS 208

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  + L +    ++         +  V+  ++  D+    +   L  G++   + 
Sbjct: 209 GEIKKLASSFLDNPVTIEVARSNQTADRVTQVVYKVDS-DDAKRDIVAHLIRGRQLKQVL 267

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   SN +    R     E      + IHG  +  ++ + +++FK G   +L+AT 
Sbjct: 268 VF------SNTKIGASRLARELEKGGVKASAIHGDKTQSERMAALEAFKGGEIDVLVATD 321

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D   +I  +  +     +H++ GR GR       I L+     +       
Sbjct: 322 VAARGLDISDLPCVINYDLPYNAEDYVHRI-GRTGRAGASGDAISLFTTKDERLLLDIEK 380

Query: 610 VLKNTEDGFLIAE 622
           ++ +    F+ AE
Sbjct: 381 LINHK---FVPAE 390


>gi|294828452|ref|NP_714230.2| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
           56601]
 gi|293386306|gb|AAN51248.2| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 516

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 75/385 (19%), Positives = 136/385 (35%), Gaps = 41/385 (10%)

Query: 262 AQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE- 319
            Q  +  + F   +  Q  AI  IL+          I     G+GKT    I     +E 
Sbjct: 15  IQNAILEMGFEEASPIQSEAIPVILKGKD------IIGHAQTGTGKTAAFAIPTIELLEV 68

Query: 320 --AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQA 376
                QA+I+ P   L  Q  E  +K  +      V  I G      + +AL +      
Sbjct: 69  ESKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRK----NP 124

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            I+I T     D ++           ++L   DE    G ++ ++   K T         
Sbjct: 125 QIVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPAD------ 178

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +T++ ++    D+  + +K     P    +         IE++   + E  K   +
Sbjct: 179 ---RQTIMFSATMTDDVLTLMKKFQNH-PQIIDVTHQKLSAPKIEQIYYEIQENAKGEAL 234

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              IE +         N ++ V+    L +        +HG ++   ++ VM  F+ G+ 
Sbjct: 235 ARLIEYRNVKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMSGFRKGSI 294

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+AT V   GIDV +   +   +    G   +H++ GR GR  +              
Sbjct: 295 EILVATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRI-GRTGRAGKKGIAFSFIVGKQIY 353

Query: 603 NSYTRLSVLK-NTEDGFLIAEEDLK 626
           N      +     E G +   +DL+
Sbjct: 354 NLKKIERINGIKIEAGKIPTLDDLE 378


>gi|170058665|ref|XP_001865019.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167877695|gb|EDS41078.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 686

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 85/367 (23%), Positives = 143/367 (38%), Gaps = 41/367 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q   +   +        M+ I Q   GSGKTL  +      ++         G  
Sbjct: 138 KPTAIQAQGMPIAMTG----RDMVGIAQ--TGSGKTLAYVAPALVHIQHQETVHRGDGPI 191

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LAQQ  +    + Q T      + G  P+  + + LER     A I+I T 
Sbjct: 192 ALILAPTRELAQQIQQVANDFGQRTNTNNTCVFGGAPKGPQIRDLER----GAEIVIATP 247

Query: 384 ALFQDSIQYY--------KLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 248 GRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDRQVLMWSATWPKE 307

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWI 488
            R L    L D     I      A    ++ V +      D+ + +L   +S   +   I
Sbjct: 308 VRNLAEEFLNDYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLLTEISAEAETKTI 367

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +E K     R V +   S+  +   +++I HG  S  +++ V+++F+NG   +L+AT
Sbjct: 368 V-FVETK-----RRVDDITRSICRNGWRAVSI-HGDKSQQERDYVLNAFRNGRQGILVAT 420

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV D   +I  +        +H++ GR GR     +   L+    +  +   +
Sbjct: 421 DVAARGLDVEDVKFVINYDYPSNSEDYVHRI-GRTGRSNNTGTAYTLFTNSNANKAGDLI 479

Query: 609 SVLKNTE 615
           +VL+   
Sbjct: 480 NVLREAN 486


>gi|254172736|ref|ZP_04879410.1| cold-shock deAd box protein a [Thermococcus sp. AM4]
 gi|214032892|gb|EEB73720.1| cold-shock deAd box protein a [Thermococcus sp. AM4]
          Length = 392

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 82/345 (23%), Positives = 131/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +PT  Q   I  +L+       +  I Q   G+GKT    + +  A+   E   QA+I+ 
Sbjct: 23  TPTDIQREVIPRLLEG-----DVDIIGQSQTGTGKTAAFALPIIEAIDPKEKTVQAIILT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + IK      ++ V  I G  P   + +ALER      H+++GT     D
Sbjct: 78  PTRELALQVADEIKSLRGKKRVYVYAIYGGQPIGPQIRALER----GVHVVVGTPGRVLD 133

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            +    L L  V        D     G        + +      +L+ +AT     L+L 
Sbjct: 134 HLNRGTLDLSSVRFFVLDEADRMLDMGFVDDIEEIMRRAPEEKRILMFSATMPMGILLLA 193

Query: 439 SLGDID-----ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
                +     +S+    P         ++P  +     E+LK VL EG      C    
Sbjct: 194 KKYMRNPEVVLVSRDEIVPEMVDQEYVEVLPARK----YEKLKEVLEEGFYGIIFCHTKR 249

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           E +E + R   + F             ++G MS   +E   + FK G   +L+AT V   
Sbjct: 250 ETRELSERLRRDGF---------RADALNGDMSQAARERTFNRFKEGKINVLVATDVAAR 300

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+DV + S +I  +        +H++ GR GR  +    I    P
Sbjct: 301 GLDVREISHVINYSLPMNPEQYIHRI-GRTGRMGKRGKAITFLEP 344


>gi|163795533|ref|ZP_02189499.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199]
 gi|159179132|gb|EDP63665.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199]
          Length = 521

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 130/347 (37%), Gaps = 35/347 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  QE AI  +L           +     G+GKT    + M   + AG       +++
Sbjct: 28  KPTPIQEKAIPYVLMGRDV------LGCAQTGTGKTASFTLPMIDILSAGRAKARMPRSL 81

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+AP   LA Q  E   KY QNT++ + ++ G +    +   L+R       ++I T   
Sbjct: 82  IIAPTRELAAQVSENFVKYGQNTRLSMALLIGGVSMGDQEAKLDR----GVDVLIATPGR 137

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D  +  +++L  V     DE  R      +   +       ++     I +TL  ++ 
Sbjct: 138 LLDHFERGRILLTDVKILVIDEADRMLDMGFIPDVE------RIVSLLPTIRQTLFFSAT 191

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE------ 494
              +I ++ +K        +V  P +  + V + L     + K+         E      
Sbjct: 192 MAPEIKRLADKFLMNPKEVSVDAPASAAENVAQHLVRCSVKDKRDALRSLLKSETVDSAL 251

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
              +  R +     SL  +   ++ + HG MS   +   +  FK G  +L+I + V   G
Sbjct: 252 IFCNRKRDIGVLHRSLQRYGIEAVQL-HGDMSQPARTETLAKFKAGEARLVICSDVAARG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           ID+   S +   +        +H++ GR GR         L  P  S
Sbjct: 311 IDIKGLSHVFNFDVPSHAEDYVHRI-GRTGRAGLSGRAFTLATPEDS 356


>gi|229035098|ref|ZP_04189045.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1271]
 gi|228728283|gb|EEL79312.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1271]
          Length = 481

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 144/381 (37%), Gaps = 40/381 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  ++ L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   
Sbjct: 12  SKEVRRALTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+++ P   LA Q  E I    +  +I    I G  P A ++  L++    
Sbjct: 66  VEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ---- 121

Query: 375 QAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
           + HI++GT     D I+           L++   DE    G   ++   + +  T    +
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 425 LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT       L  T +      +I         I+  +  +   +++     + + E 
Sbjct: 182 LFSATLPKDVEKLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDITMIEN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I  + +E  +  +R          +        IHG M   D+  VMD F+ G  
Sbjct: 242 PDSCIIFCRTQENVDHVYRQ--------LKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKF 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + L+AT V   GID+ + + +I  +      + +H+  GR GR       I    P  ++
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENR 352

Query: 603 NSYTRLSVLKNTEDGFLIAEE 623
                   +     GF I +E
Sbjct: 353 FLEEIEEYI-----GFEIPKE 368


>gi|126632201|gb|AAI33101.1| Ddx46 protein [Danio rerio]
          Length = 1032

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 150/388 (38%), Gaps = 41/388 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  K+   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 356 WVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRD------LIGIAKTGSGKTIAFL 409

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK++++  + V  + G    + 
Sbjct: 410 LPMFRHILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISE 469

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 470 QIAELKR----GAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQV 525

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KP++  +   + +   +E+ 
Sbjct: 526 M------RIVDNVRPDRQTVMFSATFPRTMEALARR-ILSKPVEVQVGGRSVVCSDVEQH 578

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 579 VIVIEEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQY 638

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNG C+LL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 639 DRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHR-AGRTGRARN 697

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTED 616
                       ++ S   L  L+ +  
Sbjct: 698 KGYAYTFITEGQARYSGDILKALELSGS 725


>gi|315443280|ref|YP_004076159.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
 gi|315261583|gb|ADT98324.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
          Length = 561

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 132/336 (39%), Gaps = 22/336 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q + I  +L+          +     G+GKT    I + + ++      QA+++A
Sbjct: 35  SPSPIQAATIPAMLEG------SDVVGLAQTGTGKTAAFAIPILSKIDTESRNTQALVLA 88

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   +Y    ++ V  I G      +   L+R     A +++GT     D
Sbjct: 89  PTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLAGLKR----GAQVVVGTPGRVID 144

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++   L L  +D        + L++        +L  T     +  + ++     I KI
Sbjct: 145 HLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADT-PEYKQVALFSATMPPAIKKI 203

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------RS 502
           T K     P++  +    +  E I +   ++S  +K   +   +E ++          + 
Sbjct: 204 TAKYL-HDPVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLETEQGDAMIVFVRTKQ 262

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             E           + + I+G +    +E  +   K+GT  +L+AT V   G+DV   S 
Sbjct: 263 ATEEVAEKLRARGFAASAINGDIPQAVRERTITQLKDGTIDILVATDVAARGLDVERISH 322

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ++  +  H   + +H++ GR GR     + +L   P
Sbjct: 323 VVNFDIPHDPESYVHRI-GRTGRAGRSGTALLFVTP 357


>gi|325108112|ref|YP_004269180.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
 gi|324968380|gb|ADY59158.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 475

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 128/361 (35%), Gaps = 37/361 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA--------VEAGGQ 323
           +PT  Q   I +IL           +     G+GKT    + +           +     
Sbjct: 24  TPTPIQAQTIPEILNGRD------ILGSAQTGTGKTAAFALPILDYLGRQNRRPIPNEPT 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA Q  +    Y ++ ++   +I G + Q  + + L R      HI++ T 
Sbjct: 78  VLVLVPTRELAIQVGDSFATYGRHLRVRHALIYGGVNQFRQVRDLNR----GVHILVATP 133

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D      I   +L L  VDE  R      L   +K      ++       ++L  +
Sbjct: 134 GRLLDLMNQGHIDLSRLELFAVDEADRMMDMGFLPDLKK------IIREIPQERQSLFFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK--- 495
           +     I++++ +     P+   I P  R  E IE+  + + +  K   +   + E+   
Sbjct: 188 ATLPPKINELS-RELLTDPVSVTIDPEVRSVEAIEQSLIYVDQQSKKDLLLDILNEEGIG 246

Query: 496 ---KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  +    R          S   IHG  S   ++  + +F+N   K+L+AT V  
Sbjct: 247 QTVVFTKTKFCANRLEEQLRKSGVSAIAIHGNKSQNARQKALLAFRNEKVKVLVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GIDV   + +I     H   + +H++ GR GR       I                 ++
Sbjct: 307 RGIDVDGVTHVINFELPHEPESYVHRI-GRTGRAGASGIAISFCSNAERAELRAIERQIE 365

Query: 613 N 613
            
Sbjct: 366 Q 366


>gi|69248308|ref|ZP_00604710.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257878842|ref|ZP_05658495.1| helicase [Enterococcus faecium 1,230,933]
 gi|257881478|ref|ZP_05661131.1| helicase [Enterococcus faecium 1,231,502]
 gi|257890700|ref|ZP_05670353.1| helicase [Enterococcus faecium 1,231,410]
 gi|258615088|ref|ZP_05712858.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium DO]
 gi|293560261|ref|ZP_06676758.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
 gi|294621795|ref|ZP_06700954.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
 gi|314938932|ref|ZP_07846197.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|314943517|ref|ZP_07850284.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|314948188|ref|ZP_07851582.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
 gi|314951548|ref|ZP_07854594.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|314991589|ref|ZP_07857065.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|314994922|ref|ZP_07860049.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|68194452|gb|EAN08953.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257813070|gb|EEV41828.1| helicase [Enterococcus faecium 1,230,933]
 gi|257817136|gb|EEV44464.1| helicase [Enterococcus faecium 1,231,502]
 gi|257827060|gb|EEV53686.1| helicase [Enterococcus faecium 1,231,410]
 gi|291598627|gb|EFF29685.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
 gi|291605711|gb|EFF35148.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
 gi|313590904|gb|EFR69749.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|313593873|gb|EFR72718.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|313596242|gb|EFR75087.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|313597889|gb|EFR76734.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|313641641|gb|EFS06221.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|313645321|gb|EFS09901.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
          Length = 503

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 35/346 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  Q   I   L           I Q   G+GKT    + M   ++      Q +
Sbjct: 20  GFEEATPIQAETIPLALAGKDV------IGQAQTGTGKTAAFGLPMLEKIDPDRHELQGL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E + +  ++ ++ V+ + G      + + L+     + HI++GT   
Sbjct: 74  VIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLKD----RPHIVVGTPGR 129

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--R 433
             D I  + L L  V        DE    G  + +   ++Q       LL +AT  P  +
Sbjct: 130 MLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQRQTLLFSATMPPAIK 189

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + +  + +    KI  K      I    +     ++     ++   +  +   +  +  
Sbjct: 190 NIGVKFMKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTPELTIVFGRT- 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+      E        IHG +S   + SV+ SFK+G   +L+AT V   
Sbjct: 249 -------KRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAAR 301

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKGGMSVTFVTPN 346


>gi|228997517|ref|ZP_04157133.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17]
 gi|228762256|gb|EEM11186.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17]
          Length = 433

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 76/357 (21%), Positives = 132/357 (36%), Gaps = 35/357 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  ++           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 26  TPIQEKAIPVVMAGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 79

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    I+K       I V  I G    A + + L     G  HI++ T     D 
Sbjct: 80  RELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRKL----KGNTHIVVATPGRLLDH 135

Query: 390 IQY--------YKLILVIVDEQHRFG--VQQRLKLTQKATAPHVLLMTATPIP--RTLVL 437
           ++           L+L   D+   FG        L +   +   +L +AT     + L  
Sbjct: 136 LRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQTMLFSATMPKDIKKLAK 195

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
             + + ++ +I         IK  +I     D   +     + +  + +        K  
Sbjct: 196 RYMKEPEMIQIQSAEVTVNNIKQRVIET--TDRAKQDALRHVMDRDQPFLAVIFCRTK-- 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              R   + ++ L  +   +   +HG +S   +E VM SF++   + LIAT V   G+DV
Sbjct: 252 ---RRASKLYDDLKGYGY-NCDELHGDLSQGKRERVMKSFRDAKIQYLIATDVAARGLDV 307

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
              + +   +      + +H++ GR GR  E    I    P            +  T
Sbjct: 308 EGVTHVFNYDIPEDVESYIHRI-GRTGRAGESGLAITFVAPKDEMYLKEIEKGIGAT 363


>gi|153938593|ref|YP_001391335.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str.
           Langeland]
 gi|152934489|gb|ABS39987.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. Langeland]
 gi|295319364|gb|ADF99741.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. 230613]
          Length = 376

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 79/369 (21%), Positives = 129/369 (34%), Gaps = 39/369 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE +I      M  KN    I +   G+GKTL  L+ M   +       Q +I+ 
Sbjct: 24  EPTPIQEESI------MLIKNGNDVIAEAQTGTGKTLAFLLPMFENISPDINAIQGLIIT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  +   + +    G      + K L        H++I T     D
Sbjct: 78  PTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKL----KNNIHLVIATPGRLLD 133

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPRT--LV 436
            +            L+L   DE    G +   R  +         L  +AT       L 
Sbjct: 134 HLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATMNSEVKKLA 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
             ++ D  +  I ++    K IK V+I      +  +  K++  E      I  +     
Sbjct: 194 YKNMRDPKLIIIEKEEVTLKNIKQVLIETTDRRKQEDLCKILDEENPFMAIIFCRT---- 249

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+           +   +HG ++   +E +M SFKN   + LIAT V   G+D
Sbjct: 250 ----KRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + +   +      + +H++ GR GR  E     L   P   +        +K    
Sbjct: 306 ITGVTHVFNYDIPENAESYIHRI-GRTGRAGEKGYTFLFVAPKDEQTLGMIEREIK---- 360

Query: 617 GFLIAEEDL 625
            F I  + L
Sbjct: 361 -FKIPRKTL 368


>gi|257870943|ref|ZP_05650596.1| helicase [Enterococcus gallinarum EG2]
 gi|257805107|gb|EEV33929.1| helicase [Enterococcus gallinarum EG2]
          Length = 502

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 134/346 (38%), Gaps = 35/346 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE+ I   LQ          I Q   G+GKT    + M   ++      Q +
Sbjct: 20  GFEEATPIQEATIPLALQGRDV------IGQAQTGTGKTAAFGLPMLEKIDPANHQLQGL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E + +  ++ +I V+ + G      + + L+     + HI++GT   
Sbjct: 74  VIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLKD----RPHIVVGTPGR 129

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--R 433
             D I  + L L  V        DE    G  + +   ++Q       LL +AT  P  +
Sbjct: 130 MLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPEERQTLLFSATMPPAIK 189

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           ++ +  + + +  +I  K      I    +     ++     +++  +  +   +  +  
Sbjct: 190 SIGVKFMKNPEHVQIKAKEMTADLIDQYYVRSKDYEKFDIMTRLLDVQTPELTIVFGRT- 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+      E        IHG +S   + SV+ SFK+G   +L+AT V   
Sbjct: 249 -------KRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAAR 301

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKGGISVTFVTPN 346


>gi|217972083|ref|YP_002356834.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS223]
 gi|217497218|gb|ACK45411.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|315266255|gb|ADT93108.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 469

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 153/432 (35%), Gaps = 47/432 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
             T  Q  ++  IL           I QG  GSGKT    + +   ++      Q +++ 
Sbjct: 34  EMTPIQAQSLPPILAGQDV------IGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLC 87

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+   +    + V  + G +P   +  +LE      AHII+GT     
Sbjct: 88  PTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEH----GAHIIVGTPGRIV 143

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +   +L L  +          R+       A   ++  A    +TL+ ++     I  
Sbjct: 144 DHLDRNRLDLSNL-NMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLFSATFPEQIQS 202

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFR 501
           I  K     P    +   +    + +    +  +  +   +   + E K        N +
Sbjct: 203 IA-KQIMYDPSMVKVEGNHDSLSIAQHFYHLDDDKARMQALQLLLLEHKPESAVVFCNTK 261

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              ++     E    S+  +HG +   D++  +  F N +  +L+AT V   G+D+    
Sbjct: 262 RETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALD 321

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            +   +  +     +H++ GR GR     +    Y+             L+       + 
Sbjct: 322 AVFNYHVAYDTEVHIHRI-GRTGRAGSKGAAYTFYNDQDGYKIALLEEYLEREITSESLP 380

Query: 622 EEDL--------------------KQRKEGEILG--IKQSGMPKFLIAQPEL--HDSLLE 657
            E L                    ++ + G+ILG    ++G+    + + ++  + + + 
Sbjct: 381 SESLLGNTPAAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKIQVTDYRAYVA 440

Query: 658 IARKDAKHILTQ 669
           + RK AK  L +
Sbjct: 441 VNRKVAKKALNK 452


>gi|154688021|ref|YP_001423182.1| DbpA [Bacillus amyloliquefaciens FZB42]
 gi|154353872|gb|ABS75951.1| DbpA [Bacillus amyloliquefaciens FZB42]
          Length = 479

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 80/364 (21%), Positives = 136/364 (37%), Gaps = 39/364 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            PT+ Q   I   LQ      +   +++   GSGKT    I +    E      QA+I+ 
Sbjct: 24  EPTEVQRRVIPAALQ------KKDLVVKSQTGSGKTAAFGIPICELAEWEENKPQALILT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I    +  +I    + G      ++  L++    ++H++ GT     D
Sbjct: 78  PTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQ----KSHVVAGTPGRVLD 133

Query: 389 SIQYYKLIL--------VIVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP---RTLV 436
            I+   L L           DE    G  +Q   + Q      V ++ +  +P     L 
Sbjct: 134 HIEKGTLPLERLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTMLFSATLPDDVEKLS 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            T + D ++ ++  +    K I+  +      D+      V+++E   +  I  + +E+ 
Sbjct: 194 RTYMKDPELIEVKAEGLTTKDIEHFVTRTEEEDKTSLLRDVLITENPDSCIIFCRTKERV 253

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                          +        IHG M   D+  VM+ FK G  + LIAT V   GID
Sbjct: 254 IQ--------LTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIATDVAARGID 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           + + S++I  +      + +H+  GR GR       I    P     +     +   T  
Sbjct: 306 IENISLVINYDIPLEKESYVHR-TGRTGRAGHRGRAITFVTP---FEARFLNDI--ETYI 359

Query: 617 GFLI 620
           GF I
Sbjct: 360 GFRI 363


>gi|116872279|ref|YP_849060.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741157|emb|CAK20277.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 518

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 132/348 (37%), Gaps = 35/348 (10%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
             + F   T  QE  I   L+          I Q   G+GKT    + M   ++      
Sbjct: 18  NRMGFEEATPIQEKTIPLGLEGKD------LIGQAQTGTGKTAAFGLPMIHKIDQKSNNV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+AP   LA Q  E + K + +  + V  + G    + + ++L++       I++GT
Sbjct: 72  QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK----NPQIVVGT 127

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L L  V        DE    G    +   L +       LL +AT P 
Sbjct: 128 PGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    +   ++ +I  K      I+   + ++  ++     +++  +  +   +  
Sbjct: 188 PIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +   +        IHG ++   + SV+  FK G   +L+AT V
Sbjct: 248 RT--------KRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   + +   +      + +H++ GR GR  +    I    P
Sbjct: 300 AARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGMAITFVQP 346


>gi|312219930|emb|CBX99872.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1226

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 74/362 (20%), Positives = 137/362 (37%), Gaps = 44/362 (12%)

Query: 272  SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
             PT  Q       L           +   + GSGKTL   +     + A        G  
Sbjct: 839  KPTAIQAQGWPMALSGRDV------VGVAETGSGKTLTYCLPAIVHINAQPLLAPGDGPI 892

Query: 324  AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             +I+AP   LA Q  + I K+ ++++I    + G +P+  + + L R       + I T 
Sbjct: 893  VLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDLAR----GVEVCIATP 948

Query: 384  ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
                D ++  K        L+L   D     G   Q R  + Q        + +AT    
Sbjct: 949  GRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMWSATWPKE 1008

Query: 434  TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
               L S    D  ++             +   +RI +++E L+ ++S+ +    I     
Sbjct: 1009 VRQLASDYQNDWIQVNLGSMD-------LSAHHRIQQIVEHLETIMSDKENKILIFT--- 1058

Query: 494  EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                   R   E    L +    +++I HG     +++ V++ FK G   +++AT V   
Sbjct: 1059 ----GTKRVADEITRFLRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVATDVASR 1113

Query: 554  GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            GIDV + + +   +  +     +H++ GR GR     + I L+    SK +   + +L  
Sbjct: 1114 GIDVRNITHVFNYDYPNNSEDYVHRI-GRTGRAGANGTAITLFTTENSKQARDLVQILTE 1172

Query: 614  TE 615
            ++
Sbjct: 1173 SK 1174


>gi|310767698|gb|ADP12648.1| ATP-dependent RNA helicase DbpA [Erwinia sp. Ejp617]
          Length = 459

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 166/452 (36%), Gaps = 61/452 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q  ++  IL     +       Q   GSGKT    + +   V+A     QA+++ P 
Sbjct: 27  TPVQAESLPAILAGRDVR------AQAKTGSGKTAAFGLGVMHRVDASQYVTQALVLCPT 80

Query: 331 GILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + +++  + T  I +  + G  P   +R +L        HI++GT     D 
Sbjct: 81  RELADQVTKELRRLARFTSNIKILTLCGGQPVGAQRDSLLHA----PHIVVGTPGRILDH 136

Query: 390 IQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVLTS 439
           ++           L+L   D     G ++ +         A   LL +AT       ++ 
Sbjct: 137 LKRETLKLGAINTLVLDEADRMLEMGFREDIDTIISHSPQARQTLLFSATWPQAIAQISQ 196

Query: 440 LGDIDISKITEKPAGRKP-IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               D   I        P I+         +++   + ++      +  +          
Sbjct: 197 SIQRDPLTIETGDVSDLPAIEQTFYEAGAREKLTALIGLLSERQPSSCVVF--------C 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           N +   +      +    S   +HG +   +++ ++  F NG+C++L+AT V   G+D+ 
Sbjct: 249 NTKRECDEIAYALDKAQISAQPLHGDLEQRERDQMLIRFANGSCRVLVATDVAARGLDIK 308

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT------------ 606
             ++++           +H++ GR  R  +    +    P     ++             
Sbjct: 309 ALALVVNYQLSFDPEVHVHRI-GRTARAGQEGCAVSFVAPDEMIRAHALEDYLQQKLVWC 367

Query: 607 RLSVLKNTEDGFLIAE---------EDLKQRKEGEILG--IKQSGMPKFLIAQPELHDSL 655
            LS LK      L+AE            K R  G+ILG    + G+    + + ++  +L
Sbjct: 368 NLSALKAVAARPLLAEMVTVSLEGGRKAKIR-PGDILGALTGEGGLNGDQVGKIDIASTL 426

Query: 656 --LEIARKDAKHILTQDPDLTSVRGQSIRILL 685
             + I R+ A+ ++ Q      ++G+S R  L
Sbjct: 427 AYVAIRRELARKVMQQL-QQVKIKGKSCRARL 457


>gi|319427542|gb|ADV55616.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 469

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 153/432 (35%), Gaps = 47/432 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
             T  Q  ++  IL           I QG  GSGKT    + +   ++      Q +++ 
Sbjct: 34  EMTPIQAQSLPPILAGQDV------IGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLC 87

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+   +    + V  + G +P   +  +LE      AHII+GT     
Sbjct: 88  PTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEH----GAHIIVGTPGRIV 143

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +   +L L  +          R+       A   ++  A    +TL+ ++     I  
Sbjct: 144 DHLDRNRLDLSNL-NMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLFSATFPEQIQS 202

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFR 501
           I  K     P    +   +    + +    +  +  +   +   + E K        N +
Sbjct: 203 IA-KQIMYDPSMVKVEGNHDSLSIAQHFYHLDDDKARMQALQLLLLEHKPESAVVFCNTK 261

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              ++     E    S+  +HG +   D++  +  F N +  +L+AT V   G+D+    
Sbjct: 262 RETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALD 321

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            +   +  +     +H++ GR GR     +    Y+             L+       + 
Sbjct: 322 AVFNYHVAYDTEVHIHRI-GRTGRAGSKGAAYTFYNDQDGYKIALLEEYLEREITSESLP 380

Query: 622 EEDL--------------------KQRKEGEILG--IKQSGMPKFLIAQPEL--HDSLLE 657
            E L                    ++ + G+ILG    ++G+    + + ++  + + + 
Sbjct: 381 SESLLGSTPAAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKIQVTDYRAYVA 440

Query: 658 IARKDAKHILTQ 669
           + RK AK  L +
Sbjct: 441 VNRKVAKKALNK 452


>gi|270016294|gb|EFA12740.1| hypothetical protein TcasGA2_TC002367 [Tribolium castaneum]
          Length = 668

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 93/435 (21%), Positives = 159/435 (36%), Gaps = 44/435 (10%)

Query: 225 RERLAYDELLAGQIALLLMRKQFKKEIGIPI---NVEGKIAQKILRNIPFSPTKSQESAI 281
           + R   D     ++  +++R        +     N    I Q IL+     PT  Q    
Sbjct: 48  KNRATQDVDSFREVKDIIVRGNDVPSPNLCFDEGNFPEYIMQVILKQGFAEPTAIQSQGW 107

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGIL 333
             +L        ++ I Q   GSGKTL  ++     +          G  A+I+AP   L
Sbjct: 108 PVVL----SGRDLVGIAQ--TGSGKTLAYMLPAVVHINNQQRPQRGEGPVALILAPTREL 161

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQ  +   ++   T +    I G  P+  + + LER       I+I T     D ++  
Sbjct: 162 AQQIQKVAHEFGSTTMVRNTCIFGGSPKGPQARDLER----GVEIVIATPGRLIDFLEKG 217

Query: 394 K--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT--LVLTSLG 441
                    L+L   D     G   Q R  + Q      VL+ +AT   +   L    L 
Sbjct: 218 TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQVLMWSATWPKQVQALAEEFLV 277

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESN 499
           D     I             I+ +    E  E+L  +L E        I   +E KK+ +
Sbjct: 278 DYIQVNIGGLSLAANHNIKQIVEVCEESEKEEKLCKLLKEIGSDSCNKIIVFVETKKKVD 337

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +       +     ++I+I HG  S  +++ V+  F+ G   +L+AT V   G+DV D
Sbjct: 338 DITKC-----IRREGYAAISI-HGDKSQPERDYVLSEFRTGKSSILVATDVAARGLDVED 391

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
              +I  +  +     +H++ GR GR ++  +    +     + +   ++VL+       
Sbjct: 392 VKYVINFDYPNSSEDYVHRI-GRTGRCQQAGTAYAFFTSNNQRQAKDLIAVLEEAGQNVS 450

Query: 620 IAEEDLKQ--RKEGE 632
               DL Q  R    
Sbjct: 451 AELRDLAQNSRGSQN 465


>gi|227514325|ref|ZP_03944374.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum
           ATCC 14931]
 gi|227087297|gb|EEI22609.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum
           ATCC 14931]
          Length = 495

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 65/341 (19%), Positives = 130/341 (38%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE  I  +L           I Q   G+GKT    +     V+      QA+I++P 
Sbjct: 28  TPIQEQTIPMVLAGKDV------IGQAQTGTGKTAAFGLPTIEHVDVENPAIQALIISPT 81

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + +  +  ++ V+++ G      + ++LE+       I++GT    +D +
Sbjct: 82  RELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLEK----NPQILVGTPGRLRDHL 137

Query: 391 QYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--LVLT 438
           +           L+L   DE    G  + +   + Q  +    LL +AT  P    + + 
Sbjct: 138 RRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQTLLFSATMPPEIKRIGVQ 197

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D    KI  K      +    +     ++     +++  +      +  + + + + 
Sbjct: 198 FMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMIDVQDPDLTIVFGRTKRRVDE 257

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             R ++ R          + A IHG ++   +  +M  FK G   +L+AT V   G+D+ 
Sbjct: 258 LSRGLIAR--------GYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVATDVAARGLDIS 309

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR       +    P 
Sbjct: 310 GVTHVYNYDIPSDPDSYVHRI-GRTGRAGHHGVSLTFVTPN 349


>gi|45361303|ref|NP_989229.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
 gi|38969901|gb|AAH63223.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
 gi|89271852|emb|CAJ81861.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
          Length = 609

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 86/440 (19%), Positives = 157/440 (35%), Gaps = 63/440 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E            ++ K+     +N    + Q    + P 
Sbjct: 50  PKFEKNFYQEHPDVVRRTPQECDQY--------RRSKEITVRGLNCPKPVLQFHEASFPA 101

Query: 271 ----------FS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                     F+ PT  Q       L  +        +     GSGKTL  L+     + 
Sbjct: 102 NLMEVVKRQNFTDPTPIQGQGWPVALSGLD------MVGVAMTGSGKTLSYLLPGIVHIN 155

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y +  ++    I G  P+  + + LER 
Sbjct: 156 HQPFLQRGDGPILLVLAPTRELAQQVQQVAAEYGRACRLRSTCIYGGAPKGPQIRDLER- 214

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 215 ---GVEICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 271

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRKPIKTVII--PINRIDEVIERL 475
             L+ +AT       L      D   I     E  A    ++ V +     + ++++  +
Sbjct: 272 QTLMWSATWPKEVRQLAEDFLRDYVHINIGALELSANHNILQIVDVCNDGEKDEKLVRLM 331

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   +    L      ++ I HG  S  +++ V++
Sbjct: 332 EEIMSEKENKTIVFVETK-------RRCDDLTRRLRRDGWPAMGI-HGDKSQQERDWVLN 383

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 384 EFKHGKSPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSSKTGTAYTF 442

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 443 FTPGNIKQVNDLISVLREAN 462


>gi|260433500|ref|ZP_05787471.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417328|gb|EEX10587.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 476

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 142/369 (38%), Gaps = 46/369 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI   L+          +     G+GKT   ++ M   +  G       +++
Sbjct: 24  TPTPIQEGAIPPALEGRDV------LGIAQTGTGKTASFVLPMITLLARGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    YT++ ++   ++ G +    +   ++R       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDR----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     ++VDE  R      +   ++       + + TP   +TL  ++
Sbjct: 134 LLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIER-------IFSLTPFTRQTLFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK-------KAYWICPQI 492
               +I +IT+      P +  +       E IE+  V++  G+       K   +   I
Sbjct: 187 TMAPEIERITDTFL-SAPARIEVARQATASETIEQGVVMIKGGRRDREGSTKRKVLRALI 245

Query: 493 EEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           + + +         N ++ V+      + +    A IHG +    +   ++ F+ G+ + 
Sbjct: 246 DAEGDKCTNAIIFCNRKTDVDITAKSLKKYGYDAAAIHGDLDQSVRTRTLEGFREGSLRF 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+A+ V   G+DV   S +   +        +H++ GR GR       I L      K  
Sbjct: 306 LVASDVAARGLDVPSVSHVFNFDVPSHPEDYVHRI-GRTGRAGREGKAITLCTARDEKAL 364

Query: 605 YTRLSVLKN 613
                +++ 
Sbjct: 365 EAIEKLIQK 373


>gi|83942648|ref|ZP_00955109.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36]
 gi|83846741|gb|EAP84617.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36]
          Length = 559

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 145/399 (36%), Gaps = 47/399 (11%)

Query: 242 LMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            +R           +N+  K+ + I      +PT  Q  AI   L+          +   
Sbjct: 13  YVRYHRTHMTKFSDLNLNPKVLKAIDEAGYETPTPIQAGAIPPALEGKDV------LGIA 66

Query: 301 DVGSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
             G+GKT    + M   +  G       +++++ P   LA Q  E    YT++ ++   +
Sbjct: 67  QTGTGKTASFTLPMITLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKAL 126

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQ 409
           + G +    + K +++       ++I T     D  +  KLIL     ++VDE  R    
Sbjct: 127 LIGGVSFGEQDKLIDK----GVDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDM 182

Query: 410 QRLKLTQKATAPHVLLMTATPI-PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
             +   ++       +   TP   +TL  ++    +I +IT       P +  +      
Sbjct: 183 GFIPDIER-------IFQMTPFTRQTLFFSATMAPEIERITNTFL-SAPERIEVARQATT 234

Query: 469 DEVIER---------LKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEH 513
            E IE+              +E +K        E  K        N +  V+      + 
Sbjct: 235 SENIEQGVLMFKASRKDREATEKRKVLRALIDAEGDKCTNAIIFCNRKMDVDTVAKSLKK 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           +    A IHG +    +   ++ F+NG  + L+A+ V   G+DV   S +   +      
Sbjct: 295 YGYDAAPIHGDLDQSQRTKTLEGFRNGDLRFLVASDVAARGLDVPSVSHVYNYDVPSHAE 354

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             +H++ GR GR       I++  P   KN      +++
Sbjct: 355 DYVHRI-GRTGRAGRDGKAIMICVPRDEKNLEDVERLVQ 392


>gi|291280174|ref|YP_003497009.1| ATP-dependent RNA helicase DEAD/DEAH box family [Deferribacter
           desulfuricans SSM1]
 gi|290754876|dbj|BAI81253.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Deferribacter
           desulfuricans SSM1]
          Length = 525

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 118/341 (34%), Gaps = 29/341 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            PT  Q+  I  IL      +    + Q   G+GKT    I +   ++   +G + +I+ 
Sbjct: 27  EPTDIQKLVIPKILN-----SDKDIVAQAQTGTGKTAAFGIPLIEMIDRKKSGVKCLILT 81

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I       ++ +  + G      + K L+      A I++GT     D
Sbjct: 82  PTRELANQVAEEINSLKGRRKLKIVPVYGGQSMELQLKRLKE----GADIVVGTPGRILD 137

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLT 438
            ++   L        IL   DE    G    +            VLL +AT     L L 
Sbjct: 138 HLKRKSLDISKIDFFILDEADEMLNMGFIDDIKTIFRYTPENRRVLLFSATMPREILNLA 197

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D   I           T  I     +   E     L   +  Y   P+       
Sbjct: 198 KTFMKDYELIKVDAKQLTTSLTEQIYFEVRE---EDKFEALCRIRDMY---PEFYGLIFC 251

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+   +       +   +HG +S   +E ++  FK     +L+AT V   GID+ 
Sbjct: 252 RTKVDVDTVANKLIDRGYNAEGLHGDLSQYQRERILHKFKTKRINMLVATDVAARGIDID 311

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           + + +I  +      + +H++ GR GR  +    I    P 
Sbjct: 312 NLTHVINYSLPQNPESYVHRI-GRTGRAGKKGIAITFVTPS 351


>gi|323143379|ref|ZP_08078066.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066]
 gi|322416845|gb|EFY07492.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066]
          Length = 683

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 73/365 (20%), Positives = 140/365 (38%), Gaps = 36/365 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           ++++ F  PT  QE AI      M   + M  I Q   G+GKT    + + + +E   + 
Sbjct: 68  IKDLGFESPTPIQERAIPV----MMSGDDM--IGQAQTGTGKTAAFALPILSKLEPENKN 121

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             A+++ P   LA Q  E  + + ++ +   V  I G     ++ +++       A +++
Sbjct: 122 IFALVLEPTRELALQVAESFQAFARHIEDFHVVPIYGGASYDNQIRSIRH----GAQVVV 177

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATA--PHVLLMTATP 430
            T     D I+  K+ L  V        DE  R G    +      T    H  L +AT 
Sbjct: 178 ATPGRLIDLIERGKIDLSSVSYMVIDEADEMLRMGFIDDVDWILNHTPSERHTALFSATM 237

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    L      +I  K      +      ++ + ++    +++  E   A  +
Sbjct: 238 PEAIRRIARDHLNAPVEVRIESKTTTATTVHQRYWVVSGVHKIDAMTRILEVEPYDAVLV 297

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +   E       +  N L     +  A +HG +    +E +++  KNG+  ++IAT
Sbjct: 298 FVRTKTDAE-------DVANKLMARGMA-CAALHGDIPQRQREKIIERLKNGSLDIIIAT 349

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   + +   +  +   + +H++ GR GR       IL   P   +      
Sbjct: 350 DVAARGLDVDRITHVFNYDIPYDAESYVHRI-GRTGRAGRQGEAILFVSPRERRALRQIE 408

Query: 609 SVLKN 613
            V + 
Sbjct: 409 RVTRQ 413


>gi|332673089|gb|AEE69906.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 83]
          Length = 492

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ + + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|160881936|ref|YP_001560904.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160430602|gb|ABX44165.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 527

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 129/348 (37%), Gaps = 36/348 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           +  + +   T  Q  AI  +L+          + Q   G+GKT    I +   ++    G
Sbjct: 18  IEELGYEEMTPIQAQAIPVVLEGKD------IVGQAQTGTGKTAAFSIPILQKIDPKVKG 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QAVI+ P   LA Q  + + K+++    I    I G      + ++L+        I+I
Sbjct: 72  LQAVILCPTRELAIQVSDEMHKFSKFMHGIKAIPIYGGQDITRQIRSLKA----GVQIVI 127

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   +         L   DE    G ++ +   L +       LL +AT 
Sbjct: 128 GTPGRVMDHMRRKTVKFDKVSMIALDEADEMLNMGFREDIETILKEMPEDRQTLLFSATM 187

Query: 431 IPRTLVLTSLGDID--ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               + +      D  I K+ +K      I+     +   ++V    +++     K   +
Sbjct: 188 PQPIMDIARTYQKDATIVKVVKKELTVPKIEQYYYEVRPKNKVDVLSRLLDMYSPKRCLV 247

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    +  R V E   +L      +  + HG +    ++ VM SF+ G  ++L+AT
Sbjct: 248 F-------CNTKRQVDELVTALSGRGFFAEGL-HGDLKQQQRDRVMSSFRTGKAEILVAT 299

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            V   GIDV D   +   +        +H++ GR GR         L 
Sbjct: 300 DVAARGIDVDDVEAVFNYDVPQDEEYYVHRI-GRTGRAGRTGRAFTLV 346


>gi|47094873|ref|ZP_00232487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
           F6854]
 gi|284801196|ref|YP_003413061.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
 gi|284994338|ref|YP_003416106.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
 gi|47016755|gb|EAL07674.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
           F6854]
 gi|284056758|gb|ADB67699.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
 gi|284059805|gb|ADB70744.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
          Length = 522

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 132/348 (37%), Gaps = 35/348 (10%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
             + F   T  QE  I   L+          I Q   G+GKT    + M   ++      
Sbjct: 20  NRMGFEEATPIQEKTIPLGLEGKD------LIGQAQTGTGKTAAFGLPMIHKIDQKSNNV 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+AP   LA Q  E + K + +  + V  + G    + + ++L++       I++GT
Sbjct: 74  QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK----NPQIVVGT 129

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L L  V        DE    G    +   L +       LL +AT P 
Sbjct: 130 PGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMPD 189

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    +   ++ +I  K      I+   + ++  ++     +++  +  +   +  
Sbjct: 190 PIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFG 249

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +   +        IHG ++   + SV+  FK G   +L+AT V
Sbjct: 250 RT--------KRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDV 301

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   + +   +      + +H++ GR GR  +    I    P
Sbjct: 302 AARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGMAITFVQP 348


>gi|198423899|ref|XP_002126471.1| PREDICTED: similar to Eukaryotic initiation factor 4A-III
           (Eukaryotic translation initiation factor 4A isoform 3)
           (ATP-dependent RNA helicase eIF4A-3) (ATP-dependent RNA
           helicase DDX48) (DEAD box protein 48) (Eukaryotic
           initiation factor 4A-like NUK-34) (Nucl... [Ciona
           intestinalis]
          Length = 409

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 129/345 (37%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+ AIK I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 58  KPSAIQQRAIKQITKGRDV------IAQAQSGTGKTATFSISVLQMIDTQLRDTQALVLS 111

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + I        +      G        + L+       H++ GT     D
Sbjct: 112 PTRELAQQIQKVILALGDYMSVQCHACIGGTNVGEDIRKLDYGQ----HVVSGTPGRVFD 167

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        IL   DE    G ++++         A  V+L++AT     L +T
Sbjct: 168 MIRRRSLRTRSIKMLILDESDEMLNKGFKEQIYDVYRYLPPAIQVVLLSATLPHEILEMT 227

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           +    D  +I  K      + IK   + +++ +   + L  +       +A   C     
Sbjct: 228 NKFMTDPIRILVKRDELTLEGIKQFFVAVDKEEWKFDTLCDLYDTLTITQAVIFCNT--- 284

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+           ++  +HG M   ++  +M  F++G  ++LI T V   G
Sbjct: 285 ------KRKVDWLTEKMRDANFTVLCMHGDMPQKERTEIMKQFRSGESRVLICTDVWARG 338

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +DV   S+II  +  +     +H++ GR GR       I      
Sbjct: 339 LDVPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVSINFVKND 382


>gi|225374820|ref|ZP_03752041.1| hypothetical protein ROSEINA2194_00440 [Roseburia inulinivorans DSM
           16841]
 gi|225213389|gb|EEG95743.1| hypothetical protein ROSEINA2194_00440 [Roseburia inulinivorans DSM
           16841]
          Length = 531

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 130/358 (36%), Gaps = 23/358 (6%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           ++ + F   T  Q  AI  ++        +  I Q   G+GKT    I +   V+     
Sbjct: 19  IKEMGFEEATPIQSQAIPVVMSG------VDVIGQAQTGTGKTASFGIPVLHKVDPNNKK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +I++P   LA Q  E I+K ++    + +  + G      + KAL     G A III
Sbjct: 73  TQVIILSPTRELAIQVSEEIRKLSKYMHGVKILPVYGGQDINRQIKAL----KGGAQIII 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT     D ++   +    V+        + L +  +     +L        +T++ ++ 
Sbjct: 129 GTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQTVLFSAT 188

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I  IT+K      +   ++        IE+    +    K   +   ++       
Sbjct: 189 MPKPILDITKKY-QHDAVTIKVVKKELTVPSIEQYYYDVKRKDKTEVLTRLLDYYNPKLS 247

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N + +V+  +   +        +HG M    ++ VM +F++G  ++LIAT V   G
Sbjct: 248 LVFCNTKKMVDELSEELKSRGYMAEGLHGDMKQAQRDRVMKAFRSGRVEILIATDVAARG 307

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           IDV D   +   +        +H++ GR GR                      +   K
Sbjct: 308 IDVDDVEAVFNYDIPQDDEYYVHRI-GRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCK 364


>gi|19075356|ref|NP_587856.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces pombe 972h-]
 gi|48474674|sp|Q9P7C7|PRP11_SCHPO RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp11
 gi|7380876|emb|CAB85446.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces pombe]
          Length = 1014

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 76/400 (19%), Positives = 146/400 (36%), Gaps = 50/400 (12%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ++ ++ +  PT  Q  AI  I            I     GSGKT+  L+ M   ++    
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRDV------IGVAKTGSGKTIAFLLPMFRHIKDQRP 485

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  A+IM P   LA Q +   K + +   I      G  P   +   L+R     
Sbjct: 486 LKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKR----G 541

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A I++ T     D +          ++   +++DE  R           +          
Sbjct: 542 AEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIR---- 597

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++     +  +  K   +KP++  +   + +   +E++  V  E  K   
Sbjct: 598 --PDRQTVLFSATFPRAMEALARK-VLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSR 654

Query: 488 ICPQIEEKKESN-------FRSVVERFNSLHEHFTSSIAI---IHGRMSDIDKESVMDSF 537
           +   + E   +        F    E  ++L             IHG     D++S +  +
Sbjct: 655 LLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDY 714

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   +LIAT+V+  G+DV    +++  +  +     +H++ GR GR       +    
Sbjct: 715 KAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRV-GRTGRAGHTGVAVTFIT 773

Query: 598 PPLSKNSYTRLSVLKNTEDGF-----LIAEEDLKQRKEGE 632
           P   K +      LK ++         +A + L++ K G+
Sbjct: 774 PEQEKYAVDIAKALKMSKQPVPKELQTLASQFLEKVKAGK 813


>gi|315302253|ref|ZP_07873161.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
           F6-596]
 gi|313629376|gb|EFR97601.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
           F6-596]
          Length = 526

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 127/350 (36%), Gaps = 39/350 (11%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
             + F   T  QE  I   L           I Q   G+GKT    + M   ++      
Sbjct: 20  NRMGFEEATPIQEKTIPLGLAGKD------LIGQAQTGTGKTAAFGLPMIHKIDQKSNNV 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+AP   LA Q  E + K + +  + V  + G    + + ++L++       I++GT
Sbjct: 74  QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK----NPQIVVGT 129

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I    L L  V        DE    G    +           +L       +T
Sbjct: 130 PGRILDHINRRTLKLDNVETLVLDEADEMLNMGFIDDI---------ETILKEVPAERQT 180

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I +I E+     P    I        +IE+  V + E +K   +   ++ 
Sbjct: 181 LLFSATMPDPIRRIGERFM-HSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDV 239

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +       F     R + L             IHG ++   + SV+  FK G   +L+AT
Sbjct: 240 QAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   + +   +      + +H++ GR GR  +    I    P
Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGMAITFVQP 348


>gi|83952321|ref|ZP_00961053.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
 gi|83837327|gb|EAP76624.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
          Length = 552

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 136/369 (36%), Gaps = 46/369 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           SPT  Q  AI   L+          +     G+GKT    + M + +  G       +++
Sbjct: 24  SPTPIQAGAIPPALEGRDV------LGIAQTGTGKTASFTLPMLSLLARGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y+++ ++   ++ G +    + + +++       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQEQIIDK----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KLIL     ++VDE  R      +   ++       +   TP   +TL  ++
Sbjct: 134 LLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIER-------IFGLTPFTRQTLFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER---------LKVVLSEGKKAYWICP 490
               +I +IT       P +  +       E IE+              SE +       
Sbjct: 187 TMAPEIERITNTFL-SNPARVEVARQATASETIEQGVVMFKGSRRDREASEKRNVLRKLI 245

Query: 491 QIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             E  K        N ++ V+      + +    A IHG +    +   ++SF+ G  + 
Sbjct: 246 DAEGDKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTRTLESFRAGDLRF 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+A+ V   G+DV   S +   +        +H++ GR GR       +++      KN 
Sbjct: 306 LVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRI-GRTGRAGRDGKAMMICSARDEKNF 364

Query: 605 YTRLSVLKN 613
                +++ 
Sbjct: 365 DAIEKLIQK 373


>gi|16802907|ref|NP_464392.1| hypothetical protein lmo0866 [Listeria monocytogenes EGD-e]
 gi|224499403|ref|ZP_03667752.1| hypothetical protein LmonF1_06772 [Listeria monocytogenes Finland
           1988]
 gi|224503166|ref|ZP_03671473.1| hypothetical protein LmonFR_11698 [Listeria monocytogenes FSL
           R2-561]
 gi|254827809|ref|ZP_05232496.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
 gi|254832169|ref|ZP_05236824.1| hypothetical protein Lmon1_12514 [Listeria monocytogenes 10403S]
 gi|254898962|ref|ZP_05258886.1| hypothetical protein LmonJ_04075 [Listeria monocytogenes J0161]
 gi|254911550|ref|ZP_05261562.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
 gi|254935876|ref|ZP_05267573.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
 gi|16410269|emb|CAC98944.1| lmo0866 [Listeria monocytogenes EGD-e]
 gi|258600190|gb|EEW13515.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
 gi|258608464|gb|EEW21072.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
 gi|293589496|gb|EFF97830.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
          Length = 520

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 132/348 (37%), Gaps = 35/348 (10%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
             + F   T  QE  I   L+          I Q   G+GKT    + M   ++      
Sbjct: 18  NRMGFEEATPIQEKTIPLGLEGKD------LIGQAQTGTGKTAAFGLPMIHKIDQKSNNV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+AP   LA Q  E + K + +  + V  + G    + + ++L++       I++GT
Sbjct: 72  QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK----NPQIVVGT 127

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L L  V        DE    G    +   L +       LL +AT P 
Sbjct: 128 PGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    +   ++ +I  K      I+   + ++  ++     +++  +  +   +  
Sbjct: 188 PIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +   +        IHG ++   + SV+  FK G   +L+AT V
Sbjct: 248 RT--------KRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   + +   +      + +H++ GR GR  +    I    P
Sbjct: 300 AARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGMAITFVQP 346


>gi|317177063|dbj|BAJ54852.1| ATP-dependent RNA helicase [Helicobacter pylori F16]
          Length = 492

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ + + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|154300880|ref|XP_001550854.1| hypothetical protein BC1G_10578 [Botryotinia fuckeliana B05.10]
 gi|160380613|sp|A6SCT6|DBP3_BOTFB RecName: Full=ATP-dependent RNA helicase dbp3
 gi|150856326|gb|EDN31518.1| hypothetical protein BC1G_10578 [Botryotinia fuckeliana B05.10]
          Length = 592

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 145/371 (39%), Gaps = 46/371 (12%)

Query: 270 PFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV 325
           PF     PT  Q +A   +L           I   + GSGKT+   +     +  G +AV
Sbjct: 202 PFKDFKAPTPIQAAAWPFLLAGRDV------IGVAETGSGKTMAFAVP---CINKGPRAV 252

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +++P   LA Q YE I K  + + +    + G +P+  + +AL+      A I++ T   
Sbjct: 253 VVSPTRELAMQSYEQIVKLAKASGLECVCVYGGVPKDEQIRALK-----TADIVVATPGR 307

Query: 386 FQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLLMTATPIP- 432
             D I        +   ++L   D     G ++ ++     T        L+ TAT    
Sbjct: 308 LNDLINQGCADLSKARYVVLDEADRMLDKGFEEEIRKIINTTPSLGKRQTLMFTATWPES 367

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVII-------PINRIDEVIERLKVVLSEGKK 484
            R L  T +       I + P G     + I+       P ++   +++ LK   S  +K
Sbjct: 368 VRELAATFMTSPVKIAIGDNPTGDLRANSRIVQKVEVVEPRDKEYRLMQLLKQYQSGSQK 427

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              I      KKE+       R  S        +A IHG +S   +   +++FK+G   +
Sbjct: 428 DDRILVFCLYKKEAT------RVESFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSGNTPV 481

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT V   G+D+    ++I           +H++ GR GR  +    I L+       S
Sbjct: 482 LVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRI-GRTGRAGKDGLAITLFTEHDKAQS 540

Query: 605 YTRLSVLKNTE 615
              ++VLK   
Sbjct: 541 GALINVLKAAN 551


>gi|268573672|ref|XP_002641813.1| C. briggsae CBR-INF-1 protein [Caenorhabditis briggsae]
 gi|187026294|emb|CAP34430.1| CBR-INF-1 protein [Caenorhabditis briggsae AF16]
          Length = 402

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 139/376 (36%), Gaps = 34/376 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           +    F  P+  Q+ AI               I Q   G+GKT    +++   ++     
Sbjct: 44  IYGFGFEKPSAIQKRAIVPCTTGKDV------IAQAQSGTGKTATFSVSILQRIDHSDPH 97

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA++MAP   LAQQ  + +    +   + +    G       ++ LE       H+++G
Sbjct: 98  VQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEN----GIHVVVG 153

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPI 431
           T     D I    L        +L   DE    G + ++            V+L++AT  
Sbjct: 154 TPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYDVFRSMPQDVQVVLLSATMP 213

Query: 432 PRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              L +T     +  +I  K      + I+   I + + +   + L          Y + 
Sbjct: 214 AEVLDVTDRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCL-------CDLYNVV 266

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
              +     N R  V++          +++ +HG M   +++++M  F++G+ ++LI T 
Sbjct: 267 NVTQAVIFCNTRRKVDQLTEQMTSKQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTD 326

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           ++  GIDV   S++I  +        +H++ GR GR       I       ++      +
Sbjct: 327 ILARGIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTENDARQLKEIET 385

Query: 610 VLKNTEDGFLIAEEDL 625
                 +    +  DL
Sbjct: 386 YYTTQIEEMPESIADL 401


>gi|188527054|ref|YP_001909741.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470]
 gi|188143294|gb|ACD47711.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470]
 gi|308063109|gb|ADO04996.1| ATP-dependent RNA helicase [Helicobacter pylori Sat464]
          Length = 492

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ + + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|119897299|ref|YP_932512.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119669712|emb|CAL93625.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 494

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 132/358 (36%), Gaps = 30/358 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q  AI  ++           +     G+GKT    + +   +             
Sbjct: 23  EPTPIQRQAIPIVIAG------NDVMGGAQTGTGKTAGFTLPLLHRLARHANTSTSPARH 76

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+AP   LA Q YE +K Y+++  +    I G +    + + L R       I+I
Sbjct: 77  QTRALILAPTRELAMQVYESVKTYSKHLPLRATCIYGGVDMNPQIQELRR----GIEIVI 132

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  V E        R+           +L       ++L+ ++ 
Sbjct: 133 ATPGRLLDHVQQKTINLTQV-EMLVLDEADRMLDMGFIPDIKRILALLPASRQSLLFSAT 191

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
              +I K+ ++   + P    +   N + E I      +S G K   +   +  + ++  
Sbjct: 192 FSDEIKKLADQ-MLKNPQLIEVARRNMVSETITHRVHPVSSGMKRNLLAHLLRHQPDTQA 250

Query: 499 ----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               + + V  R     E  + S   IHG  S   +   +++FK G  ++L+AT V   G
Sbjct: 251 LVFVDTKLVCGRLAHFLERHSISADSIHGDKSQQQRTETLEAFKAGKLRVLVATDVAARG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           ID+ +   +I     H     +H++ GR GR     + + L              ++K
Sbjct: 311 IDIDELPYVINYELPHTAEDYVHRI-GRTGRAGHQGNAVSLVCTEEKHLLADIQKLIK 367


>gi|167913398|ref|ZP_02500489.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 112]
          Length = 465

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 169/461 (36%), Gaps = 62/461 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 23  LAQLGYTDMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARRFD 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    + V  + G  P   + ++LE      AHII+
Sbjct: 77  VQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIIV 132

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 133 GTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQ------CPPTRQTL 186

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   +   
Sbjct: 187 LFSATYPDGIAKLSQQFLRHP--KRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHY 244

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 245 RPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 305 VAARGLDIAQLEAVINVDVTPDPEVYVHRI-GRTGRADQDGWALSLASMNEMGRVGGIEQ 363

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILGIKQSGMPKFLIAQP 649
            L    +   +A              E L+           G++LG   +G   F  AQ 
Sbjct: 364 ALAREVEWHPLAELKAGGDAPLLPPMETLQILGGRKDKIRPGDVLGAL-TGDAGFSGAQI 422

Query: 650 -----ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                    + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 423 GKINVTEFSTYVAVERGIARDALRKL-NAGKIKGKRVKVRL 462


>gi|126444520|ref|YP_001061297.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 668]
 gi|126224011|gb|ABN87516.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 668]
          Length = 465

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 169/461 (36%), Gaps = 62/461 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 23  LAQLGYTDMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARIDARRFD 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    + V  + G  P   + ++LE      AHII+
Sbjct: 77  VQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIIV 132

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 133 GTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQ------CPPTRQTL 186

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   +   
Sbjct: 187 LFSATYPDGIAKLSQQFLRHP--KRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHY 244

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 245 RPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 305 VAARGLDIAQLEAVINVDVTPDPEVYVHRI-GRTGRADQDGWALSLASMNEMGRVGGIEQ 363

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILGIKQSGMPKFLIAQP 649
            L    +   +A              E L+           G++LG   +G   F  AQ 
Sbjct: 364 ALAREVEWHPLAELKAGGDAPLLPPMETLQILGGRKDKIRPGDVLGAL-TGDAGFSGAQI 422

Query: 650 -----ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                    + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 423 GKINVTEFSTYVAVERGIARDALRKL-NAGKIKGKRVKVRL 462


>gi|51244788|ref|YP_064672.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
 gi|50875825|emb|CAG35665.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila
           LSv54]
          Length = 423

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 142/372 (38%), Gaps = 42/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +P+  Q  AI  I   M  K+ M        G+GKT    + +   +    +        
Sbjct: 23  TPSPIQAKAIPVI---MEGKDVMAA---AQTGTGKTAAFTLPILELLSQSKRRVQANQAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   LA Q  E +  Y +   +   +I G +    + K L     G   I++ T 
Sbjct: 77  VLILTPTRELAAQIGESVTTYGKGLSLTSAVIFGGVNINPQMKRLR----GGVDILVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     +I++ +L ++++DE  R      +   +K      +L       + L+ +
Sbjct: 133 GRLLDLHRQNAIKFNRLEILVLDEADRMLDMGFINDIRK------VLAFLPKERQNLMFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +     I+ +  +     P++  + P N   E+I++    + + +K   +   I + K  
Sbjct: 187 ATFSSSINNLA-RGMFNNPVEISVTPPNSTVEIIDQCIYPVDKKQKPALLIQLIRDNKWG 245

Query: 498 -----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                S  +    R     +    + A IHG  S   +   +  FKNGT ++L+AT +  
Sbjct: 246 QTLVFSKTKHGANRLVGQLQKKGINAAAIHGNKSQSARTKALAEFKNGTVQILVATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRL 608
            G+D+     ++  +  H     +H++ GR GR       I L        L+       
Sbjct: 306 RGLDIDLLPHVVNFDLPHVQEDYIHRI-GRTGRAGASGEAISLVCADEFALLADIERLIK 364

Query: 609 SVL-KNTEDGFL 619
            +L + + +GF 
Sbjct: 365 KILPRKSVEGFE 376


>gi|254520792|ref|ZP_05132848.1| DEAD-box ATP dependent DNA helicase [Clostridium sp. 7_2_43FAA]
 gi|226914541|gb|EEH99742.1| DEAD-box ATP dependent DNA helicase [Clostridium sp. 7_2_43FAA]
          Length = 526

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 73/351 (20%), Positives = 133/351 (37%), Gaps = 37/351 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           + ++ F  P++ Q  AI   +Q          I Q   G+GKT      +   +  ++G 
Sbjct: 19  INDLGFEKPSQIQAEAIPVAIQGYD------LIGQAQTGTGKTAAFGCGIINHISKKSGL 72

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+AP   LA Q  + +K+ ++   + +  + G  P  ++ +AL+R      +I++GT
Sbjct: 73  SAIILAPTRELAIQVNDELKRLSKYDDLTILPVYGGDPITNQIRALKR----NVNIVVGT 128

Query: 383 HALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I+           L+L   DE    G    L+   K               +T
Sbjct: 129 PGRVLDHIKRGTIKLDQIKFLVLDEADEMLNMGFIDDLEDIIKQLPSE---------RQT 179

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE- 493
           L+ ++     I K+ ++          I   +     I +    +S   +   +C  ++ 
Sbjct: 180 LLFSATMPDQIRKLAKRYMKPDAKHISIKKTSMTVSTISQNFFEVSHKTRFEALCRVLDF 239

Query: 494 --EKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                   F    +  + L E   S    +  +HG MS   +   +  FK G+   L+AT
Sbjct: 240 DTPSSAIIFCRTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNYLVAT 299

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            V   GIDV   + +I  +      + +H++ GR GR         L  P 
Sbjct: 300 DVAARGIDVEGITHVINYDLPQDVESYVHRI-GRTGRANREGIAYSLVSPK 349


>gi|82540694|ref|XP_724645.1| RNA helicase-1 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479359|gb|EAA16210.1| RNA helicase-1 [Plasmodium yoelii yoelii]
          Length = 443

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 127/341 (37%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+  IK IL+          I Q   G+GKT   +I+    +       QA+I+A
Sbjct: 45  KPSAIQQRGIKPILKGYDT------IGQAQSGTGKTATFVISSLQLINYDYVACQALILA 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + +       ++      G          L++      H+++GT     D
Sbjct: 99  PTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQ----GVHMVVGTPGRVYD 154

Query: 389 SIQYYKLI--------LVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
            I    L         L   DE    G + ++     +      V L +AT     L LT
Sbjct: 155 MIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVALFSATMPQEILELT 214

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D   I  K      + I+   + + + +  ++ L          Y      +   
Sbjct: 215 TRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTL-------CDLYETLTITQSII 267

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+       +   +++ +HG M   D++ +M  F++G+ ++L+ T ++  GID
Sbjct: 268 YCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGID 327

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   S++I  +        +H++ GR GR       I    
Sbjct: 328 VQQVSLVINYDLPCSPDTYIHRI-GRSGRFGRKGVAINFVT 367


>gi|323497478|ref|ZP_08102496.1| putative ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323317561|gb|EGA70554.1| putative ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 426

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 144/385 (37%), Gaps = 32/385 (8%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           N   +I + +        T  Q+ AI    +          +     G+GKT    + + 
Sbjct: 7   NFSPEIVKALTECGYEKLTPVQQKAIPFARKGHD------ILANAQTGTGKTAAFALPIV 60

Query: 316 AAVEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             +            +AVI+AP   LA Q    I+ YT+ T+I    I G    + ++KA
Sbjct: 61  QNILDNAKPRQRHQARAVILAPTRELAAQIATNIQDYTKYTEIKTVAIYGGAKMSSQQKA 120

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           LE        +++ T     + +    + LV + E   F    R+      +A   ++  
Sbjct: 121 LEA----GVDVLVATPGRLIEHMDLNNVSLVNL-EFLVFDEADRMLDMGFISAIENIMSG 175

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
               P+T++ ++     ++ +  K   R+P +  +   N   E +  +   + + +K   
Sbjct: 176 VATKPQTMLFSATFSAQMNTLATK-ILRQPKRVSVARENATAETVAHVVYPVEQERKREL 234

Query: 488 ICPQIEEKKESN---FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGT 541
           +   I  K       F +  E  N L +          + HG  +   +   +D FK+G 
Sbjct: 235 LSELIGRKNWQQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALDEFKSGK 294

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            +++IAT V   G+D+ +   ++  +        +H++ GR GR  +  + +   +    
Sbjct: 295 ARVMIATDVAARGLDIQNLPHVVNFDMPFLAEDYVHRI-GRTGRAGQRGNAVSFVNRDEE 353

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLK 626
                   ++     G  I  ++L+
Sbjct: 354 LTLQQVEMLI-----GQRIYRKELE 373


>gi|317179357|dbj|BAJ57145.1| ATP-dependent RNA helicase [Helicobacter pylori F30]
          Length = 492

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ + + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|317490115|ref|ZP_07948604.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|316910820|gb|EFV32440.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
          Length = 509

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 129/367 (35%), Gaps = 42/367 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-- 323
             + +  PT  Q  AI  +L+          I     G+GKT   L+ + + +  G +  
Sbjct: 18  ERLGYENPTPVQLQAIPLVLEGRD------LIAAASTGTGKTAAFLLPILSTLPRGKRGK 71

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
                ++++P   LAQQ  +   + T+ T   V  + G  P   +   + R       ++
Sbjct: 72  RAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINEIRR----GTDVL 127

Query: 380 IGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTAT 429
           I T     D +            L+L   D     G    +             LL +AT
Sbjct: 128 IATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTLLFSAT 187

Query: 430 PIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                +  + + L D  + +I       + ++  ++PI    +      ++  +G     
Sbjct: 188 IDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQALLEEKGSDRVI 247

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +  +         ++  E               IH   S   ++  +D+F+ G   +L+A
Sbjct: 248 VFART--------KNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVA 299

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V+  GIDV D   +I  +        +H++ GR GR  E    +       ++ S   
Sbjct: 300 TDVLARGIDVPDVDHVINFDLPDMPEDYVHRI-GRTGRAGEQGFAVSFV----TRESRRT 354

Query: 608 LSVLKNT 614
           +S ++  
Sbjct: 355 MSDIEKL 361


>gi|260773840|ref|ZP_05882755.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260610801|gb|EEX36005.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 420

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 133/363 (36%), Gaps = 39/363 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT+ Q  AI  +L           +     G+GKT    + +   + A           
Sbjct: 28  TPTEIQIQAIPPVLAGHDV------LAGAQTGTGKTAAFGLPLLQRLAASKTDVDVSSKD 81

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+++ P   LAQQ ++ +  Y + +++ V +  G    + +++ L     G A ++I 
Sbjct: 82  IRALVLVPTRELAQQVFDSLTAYAKGSELKVVVAYGGTSMSVQKQHLR----GGADVLIA 137

Query: 382 THALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D      L L  V     DE  R      +   Q       +L       +TL 
Sbjct: 138 TPGRLLDHAHVKSLYLGNVQTLVLDEADRMLDMGFMPDIQ------RVLRKLNRARQTLF 191

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++  D  I  +  +    +PI+  + P N   + + ++   + + +K+  +   I  + 
Sbjct: 192 FSATFDQKIKALAYR-MMHEPIEVQVTPANTTADTVSQMVYPVDKKRKSELLAYLIGSRN 250

Query: 497 ESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +   +      +      A I+G  S   ++  +D FK G  + LIAT V
Sbjct: 251 WQQVLVFTKTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKAGKIRALIATDV 310

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GID+     ++  +  +     +H++ GR GR  +    + L  P           +
Sbjct: 311 AARGIDICQLEQVVNFDLPYKAEDYIHRI-GRTGRAGQSGLAVSLMSPQEEPLLQAIERL 369

Query: 611 LKN 613
           L  
Sbjct: 370 LDQ 372


>gi|328772988|gb|EGF83025.1| hypothetical protein BATDEDRAFT_29115 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 483

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 139/372 (37%), Gaps = 44/372 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
            ++ FS PT  Q       L           +   + GSGKTL   +     + A     
Sbjct: 71  ESLGFSAPTSIQSQGWPMALSGRDV------VGVAETGSGKTLAYTLPSIVHINAQPLLK 124

Query: 321 ---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
              G   +I+AP   LA Q      K+  +++I    + G +P+  + + LER       
Sbjct: 125 PGDGPIVLILAPTRELAIQIQVECNKFGSSSRIKNTCLYGGVPKGPQMRDLER----GIE 180

Query: 378 IIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMT 427
           I I T     D ++  K        L+L   D     G + +++    Q       L+ +
Sbjct: 181 ICIATPGRLIDMLESGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 240

Query: 428 ATPIPRTLVLTSLGDIDISKI----TEKPAGRKPIKTVII--PINRIDEVIERLKVVLSE 481
           AT       L      +  ++     E  A     + V I    ++   + + L+ ++S 
Sbjct: 241 ATWPKEVQALARDYQKEFIQVNVGSMELSASHNITQIVEICPSHDKRHRLYKLLEDIMSN 300

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
             +   I            R+  +    L      ++AI HG     +++ VM  FK+G 
Sbjct: 301 ADQKTIIFT-------GTKRTADDITRDLRHDGFPALAI-HGDKKQQERDWVMQEFKSGK 352

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +LIAT V   G+DV D   +I  +  +     +H++ GR GR     +   L+ P   
Sbjct: 353 TPILIATDVAARGLDVKDVKFVINFDFPNNIEDYVHRI-GRTGRANNKGTAYTLFSPDNF 411

Query: 602 KNSYTRLSVLKN 613
           K++   + +L+ 
Sbjct: 412 KSARDLVKILEE 423


>gi|323507844|emb|CBQ67715.1| probable RNA helicase dbp2 (DEAD box protein) [Sporisorium
           reilianum]
          Length = 536

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 139/366 (37%), Gaps = 44/366 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            P+  Q  A    L           +   + GSGKT+   +     + A        G  
Sbjct: 135 EPSAIQSQAWPMALSGRD------LVAIAETGSGKTIGFALPAMVHINAQPLLKPGDGPI 188

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q      ++  ++++    + G +P+  + + L+R     A I I T 
Sbjct: 189 ALILAPTRELANQIQVECNRFGGSSRLRTCAVYGGVPKGPQIRDLQR----GAEICIATP 244

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D +   K        L++   D     G   Q R  L Q       L+ +AT    
Sbjct: 245 GRLIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQIRPDRQTLMFSATWPKE 304

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGR--KPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            + L    L +     I  TE  A    K I  V     +  ++I  L+++ ++  K   
Sbjct: 305 VQRLAGDFLNNFAQVNIGSTELAANHNVKQIIEVCTEFEKRGKLIGHLELISADNGKVII 364

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                     S  R   +    L +    ++AI HG     +++ V+  FK+G   +++A
Sbjct: 365 F--------TSTKRVADDITKFLRQDGWPALAI-HGDKQQQERDWVLAEFKSGRSPIMVA 415

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D S +I  +        +HQ+ GR GR     +    + P  SK++   
Sbjct: 416 TAVASRGLDVKDISYVINYDFPTNTEDYVHQI-GRTGRAGRTGTAYTYFTPENSKSAREL 474

Query: 608 LSVLKN 613
           + +L+ 
Sbjct: 475 VGILRE 480


>gi|289342912|ref|NP_001166066.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Bos taurus]
 gi|284794217|gb|ADB93367.1| DEAD box polypeptide 3 Y-linked short isoform [Bos taurus]
 gi|296470425|gb|DAA12540.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Bos taurus]
          Length = 660

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 146/379 (38%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + +   G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  ++++  ++ G      + + LER 
Sbjct: 257 SGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIIEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFL 431

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L ++ + G  +  +   +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 432 LDLLNATGTDSLTLV-FVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      S   L +L  
Sbjct: 544 FFNERNINISKDLLDLLVE 562


>gi|284794215|gb|ADB93366.1| DEAD box polypeptide 3 Y-linked long isoform [Bos taurus]
          Length = 661

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 146/379 (38%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + +   G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  ++++  ++ G      + + LER 
Sbjct: 257 SGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIIEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFL 431

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L ++ + G  +  +   +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 432 LDLLNATGTDSLTLV-FVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      S   L +L  
Sbjct: 544 FFNERNINISKDLLDLLVE 562


>gi|194290299|ref|YP_002006206.1| dead box ATP-dependent RNA helicase with p-loop hydrolase domain
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224134|emb|CAQ70143.1| DEAD box ATP-dependent RNA helicase with P-loop hydrolase domain
           [Cupriavidus taiwanensis LMG 19424]
          Length = 511

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 139/366 (37%), Gaps = 34/366 (9%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
              ++ +I + +      SPT  Q  AI  +L           +     G+GKT    + 
Sbjct: 34  SFGLDARILRALSEQGYTSPTPIQAQAIPVVLLGKDV------MGAAQTGTGKTAGFALP 87

Query: 314 MAAAVEA-----------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           +   +               +A+++ P   LA Q Y+ + +Y ++T +   ++ G +   
Sbjct: 88  IIQRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMN 147

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +  AL R       I++ T     D +Q   + L  V +        R+          
Sbjct: 148 PQTDALRR----GVEILVATPGRLLDHVQQKSVNLSQV-QMLVLDEADRMLDMGFLPDLQ 202

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            ++       +TL+ ++    +I ++      ++P+   +   N  +E + +    + +G
Sbjct: 203 RIINLLPAQRQTLLFSATFSPEIKRLASSYL-KQPVTIEVARSNSTNENVRQAVYQVEDG 261

Query: 483 KKAYWICPQIEEKKES----------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
            K   +   ++++ E           N +    R     E    + A IHG  +  ++  
Sbjct: 262 HKQAAVVHLLKQRAEQSQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQ 321

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            +D FK+GT   L+AT V   G+D+ D   +I  +  +     +H++ GR GR       
Sbjct: 322 TLDGFKSGTIDALVATDVAARGLDIPDMPCVINFDLPYSAEDYVHRI-GRTGRAGASGDA 380

Query: 593 ILLYHP 598
           + +Y P
Sbjct: 381 LSIYVP 386


>gi|306840076|ref|ZP_07472862.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
 gi|306404804|gb|EFM61097.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
          Length = 482

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 138/365 (37%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+      R   +     G+GKT   ++ M   +E G       + +
Sbjct: 24  APTPIQAGAIPPALE------RKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY  N ++ V ++ G +    + + LER     A ++I T   
Sbjct: 78  ILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLER----GADVLIATPGR 133

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTL 435
             D  +  KL+L  V     DE  R      +   ++           L  +AT  P   
Sbjct: 134 MLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEIT 193

Query: 436 VLTSLGDIDISKI-------TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            LT        +I       T K   ++ +K+     ++   + + ++      K A   
Sbjct: 194 KLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSEGDSLKNAIIF 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C +         + V E F SL  H       +HG M    + +++ SFK+G  +LL+A+
Sbjct: 254 CNR--------KKDVSELFRSLTRH-EFDAGALHGDMDQRARMAMLSSFKDGKLRLLVAS 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S +   +        +H++ GR GR         +     +K      
Sbjct: 305 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRI-GRTGRAGRSGKAFTIVTLSDTKYLAAIE 363

Query: 609 SVLKN 613
           S++  
Sbjct: 364 SMIGE 368


>gi|296271676|ref|YP_003654307.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296095851|gb|ADG91801.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 488

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 77/356 (21%), Positives = 138/356 (38%), Gaps = 40/356 (11%)

Query: 260 KIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +  Q+ + +  F  P+  Q+ AI  +L           + Q   G+GKT    + M   +
Sbjct: 10  ENLQRAIEDAGFKEPSPIQQDAIPVVLSGKD------MVGQAQTGTGKTAAFGLPMINMM 63

Query: 319 E--AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
              +G +AV++ P   LA Q  + + ++ +++ +    + G      + + ++R     A
Sbjct: 64  NGNSGVEAVVIVPTRELAMQVSDELFRFGKSSGMNTATVYGGQSYNMQLRNIDR-----A 118

Query: 377 HIIIGTHALFQDSIQYYK-------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMT 427
            II+ T     D ++  K       ++L   DE    G     +   T        LL +
Sbjct: 119 SIIVATPGRLIDLLKGKKIDIKPSFVVLDEADEMLDMGFLDDIKEIFTYLPKERQTLLFS 178

Query: 428 ATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKT---VIIPINRIDEVIERLKVVLSEG 482
           AT  P  + L    L + +   +T+       I     V+    R D +I          
Sbjct: 179 ATMPPAIKKLAQNILKEPEFITVTKAEMTNSKITQLFYVVDEYERDDALIRLFDF--KNP 236

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K+   C   +E         V+R ++           +HG M    +E V+ SFK G  
Sbjct: 237 EKSIIFCRTKKE---------VDRLSTYLVSQGHMAKGLHGDMEQRQREEVIRSFKKGAL 287

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +LIAT V   G+DV D S +   +      + +H++ GR GR  +    I +  P
Sbjct: 288 DVLIATDVAARGLDVNDVSHVFNYHLPFDSESYVHRI-GRTGRAGKEGVAISIVTP 342


>gi|317012091|gb|ADU82699.1| ATP-dependent RNA helicase [Helicobacter pylori Lithuania75]
          Length = 491

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ + + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|83953889|ref|ZP_00962610.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1]
 gi|83841834|gb|EAP81003.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1]
          Length = 554

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 145/399 (36%), Gaps = 47/399 (11%)

Query: 242 LMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
            +R           +N+  K+ + I      +PT  Q  AI   L+          +   
Sbjct: 13  YVRYHRTHMTKFSDLNLNPKVLKAINEAGYETPTPIQAGAIPPALEGKDV------LGIA 66

Query: 301 DVGSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
             G+GKT    + M   +  G       +++++ P   LA Q  E    YT++ ++   +
Sbjct: 67  QTGTGKTASFTLPMITLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKAL 126

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQ 409
           + G +    + K +++       ++I T     D  +  KLIL     ++VDE  R    
Sbjct: 127 LIGGVSFGEQDKLIDK----GVDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDM 182

Query: 410 QRLKLTQKATAPHVLLMTATPI-PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
             +   ++       +   TP   +TL  ++    +I +IT       P +  +      
Sbjct: 183 GFIPDIER-------IFQMTPFTRQTLFFSATMAPEIERITNTFL-SAPERIEVARQATT 234

Query: 469 DEVIER---------LKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEH 513
            E IE+              +E +K        E  K        N +  V+      + 
Sbjct: 235 SENIEQGVLMFKASRKDREATEKRKVLRALIDAEGDKCTNAIIFCNRKMDVDTVAKSLKK 294

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
           +    A IHG +    +   ++ F+NG  + L+A+ V   G+DV   S +   +      
Sbjct: 295 YGYDAAPIHGDLDQSQRTKTLEGFRNGDLRFLVASDVAARGLDVPSVSHVYNYDVPSHAE 354

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             +H++ GR GR       I++  P   KN      +++
Sbjct: 355 DYVHRI-GRTGRAGRDGKAIMICVPRDEKNLEDVERLVQ 392


>gi|257482687|ref|ZP_05636728.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289626949|ref|ZP_06459903.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649408|ref|ZP_06480751.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866127|gb|EGH00836.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330889311|gb|EGH21972.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330986634|gb|EGH84737.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 559

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 142/373 (38%), Gaps = 46/373 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ +I  IL           I Q   G+GKT    + +   ++      QA+I+A
Sbjct: 28  EPSAIQQQSIPIILAGHD------MIGQAQTGTGKTAAFALPILHRIDPSKREPQALILA 81

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y  Q   + V  + G  P   + KA+       A I++ T     
Sbjct: 82  PTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN----GAQIVVATPGRLC 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLT 438
           D ++           L+L   DE  + G    L+          ++  A P   +T++ +
Sbjct: 138 DHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLE----------VIFKAMPETRQTVLFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I  I E+   R P    I    +    IE+  +++   +K   +   +E +   
Sbjct: 188 ATLPQSIRAIAERHL-RDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFD 246

Query: 499 NFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                V          S  E      A ++G ++   +E V+DS K+G   +++AT V  
Sbjct: 247 ALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   + +   +  +   + +H++ GR GR       +LL  P         L V++
Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGREGRALLLVTPRE----RRMLQVIE 361

Query: 613 NTEDGFLIAEEDL 625
               G  +AE  L
Sbjct: 362 RVT-GQKVAEVRL 373


>gi|242239282|ref|YP_002987463.1| ATP-dependent RNA helicase DbpA [Dickeya dadantii Ech703]
 gi|242131339|gb|ACS85641.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 457

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 82/463 (17%), Positives = 173/463 (37%), Gaps = 68/463 (14%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + + T  Q +A+  IL     +       Q   GSGKT    + +   ++AG   
Sbjct: 18  LNALGYLTMTPIQAAALPAILAGKDVR------AQAKTGSGKTAAFGLGLLQHLDAGRFN 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +    I V  + G +P + +R +L        HII+
Sbjct: 72  TQSLVLCPTRELADQVANELRRLARYMPNIKVLTLCGGVPFSIQRDSLTHA----PHIIV 127

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            T     D ++           L+L   D     G    +           ++       
Sbjct: 128 ATPGRLLDHLEKETVNLDALQTLVLDEADRMLDMGFADAI---------DAVIAHVPDQR 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I+ I+ +     P+   I  ++ +   +E+    +S   K   +   +
Sbjct: 179 QTLLFSATWPDAIAAISHR-IQHDPLVIEIDTVDELP-AVEQQFYEVSRSGKLDLLQKLL 236

Query: 493 EEKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             ++        +  +     +++L      S+  +HG M   D++  +  F NG+ ++L
Sbjct: 237 SREQPASCVVFCNTKKDCQAVYDALTAS-HQSVLALHGDMEQRDRDQTLVRFANGSSRVL 295

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+D+    +++           +H++ GR  R  E    I L  P  ++ + 
Sbjct: 296 VATDVAARGLDIKALEMVVNFELSWDPEVHIHRI-GRTARAGESGLAISLCAPEEAQRAN 354

Query: 606 TRLSVLKNTEDGFLIA-----------EEDL--------KQRKEGEILG--IKQSGMPKF 644
               +L        +               L        K R  G+ILG      G+   
Sbjct: 355 ALEEMLNLKLSWHPLPTGLRIIPLEATMATLCIDGGKKAKMR-PGDILGALTGDMGLDGA 413

Query: 645 LIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            I +  +H   + + + +  A+H   Q      ++G+++++ L
Sbjct: 414 DIGKIAIHPTHAYVAVRQSVARHAWKQL-QQGKIKGKAVKVRL 455


>gi|302840989|ref|XP_002952040.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
           nagariensis]
 gi|300262626|gb|EFJ46831.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
           nagariensis]
          Length = 622

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 127/364 (34%), Gaps = 41/364 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQAV 325
           PT  Q  A    L           +     GSGKT   L+     ++        G   +
Sbjct: 145 PTPIQAQAWPIALSGRD------LVAIAKTGSGKTCGFLLPGMLHIQQTRKDPRSGPTLL 198

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q      K+ +++ I    + G  P+  + + ++        I+I T   
Sbjct: 199 VLAPTRELAVQIKTEADKFGRSSGIRNTCVYGGAPKGPQLRDIQH----GVQIVIATPGR 254

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPR-- 433
             D ++  +        L+L   D     G + +++   +        L  +AT      
Sbjct: 255 LNDFLEAGQVRLQQVSYLVLDEADRMLDMGFEPQIQRIVRTLPRQRQTLFFSATWPREVK 314

Query: 434 ----TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                 V+     + I  + EK    K I   ++ +N   E    L  ++        I 
Sbjct: 315 HIAAQFVVNQTVHVFIGGVEEKLVANKSITQHVLVLNSSHEKFGELSRIIRSKPAGTRII 374

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                K+  +  S                A IHG     +++ V+ +FK+G   +L+AT 
Sbjct: 375 IFCTTKRMCDQLSY-------QMSREFRAAAIHGDKKQSERDYVLQAFKDGRTPILVATD 427

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ + + ++  +        +H++ GR GR               +K++   + 
Sbjct: 428 VAARGLDIPNVAAVVNFDFPTGTEDYIHRI-GRTGRAGATGEAFTFMTGEDAKHARDLIQ 486

Query: 610 VLKN 613
           V++ 
Sbjct: 487 VMRE 490


>gi|253681284|ref|ZP_04862082.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
 gi|253562522|gb|EES91973.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
          Length = 528

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 78/359 (21%), Positives = 133/359 (37%), Gaps = 40/359 (11%)

Query: 257 VEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
                 ++ + ++ F  P+  QE AI  IL           I Q   G+GKT    I   
Sbjct: 10  PISDEIKRAIADMGFEAPSPIQEKAIPFILSGKD------IIGQAQTGTGKTAAFGIPAL 63

Query: 316 AAVE---AGGQAVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             ++      Q +++ P   LA Q   E  K       I V  + G  P   + KAL+R 
Sbjct: 64  DTIDLDNKSLQIMVLCPTRELAIQATQEVHKLGKYKKGINVLAVYGGQPIDRQIKALKR- 122

Query: 372 AHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHV 423
                 IIIGT     D I+   L        +L   DE    G +  ++   +A   + 
Sbjct: 123 ---GVQIIIGTPGRVIDHIRRKTLKTDNIKMIVLDEADEMLDMGFRDDIETIIQAIPQN- 178

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
                    +T++ ++     I ++++K         V+     +   IE+  + + E  
Sbjct: 179 --------RQTILFSATMAKAIIELSKKYQNNAEFIKVVHKQLTVPN-IEQRYLEVKENN 229

Query: 484 KAYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           K   +   I+ +         N +  V+   S  +        +HG M    ++ VM+ F
Sbjct: 230 KLEVLSRLIDMRNPKLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKF 289

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +NGT ++L+AT V   GIDV D   +   +        +H++ GR GR           
Sbjct: 290 RNGTIEILVATDVAARGIDVDDVEAVFNYDLPQDEEYYVHRI-GRTGRAGRSGIAFTFV 347


>gi|229184685|ref|ZP_04311885.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1]
 gi|228598789|gb|EEK56409.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1]
          Length = 447

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 26  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 79

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 80  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 135

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 136 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 194

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 195 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 253

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 254 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 313

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 314 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 360


>gi|47217820|emb|CAG07234.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 737

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 146/427 (34%), Gaps = 54/427 (12%)

Query: 237 QIALLLMRKQFKKEIGIP---------INVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           Q+  L  +   +     P            + ++  +I ++    PT  Q   +   L  
Sbjct: 79  QVIELRQKLNLRVSGAAPPKPSTSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIAL-- 136

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYE 339
                 M+ I     GSGKT   +  M   +          G  AVI+ P   L QQ + 
Sbjct: 137 --SGRDMIGI--AKTGSGKTAAFIWPMLVHIMDQKELEAGEGPIAVIVCPTRELCQQIHA 192

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK----- 394
             K++ +   +    + G      + KAL+      A I++ T     D ++        
Sbjct: 193 ECKRFGKAYSLRSVAVYGGGSMWEQAKALQE----GAEIVVCTPGRLIDHVKKKATSLQR 248

Query: 395 ---LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
              L+    D     G + +++                P  +TL+ ++     I ++  +
Sbjct: 249 VTYLVFDEADRMFDMGFEYQVRSIASHVR---------PDRQTLLFSATFRKKIERLA-R 298

Query: 452 PAGRKPIKTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRSV 503
                PI+ V   I   +E V + ++++LS   K  W+  ++ E             ++ 
Sbjct: 299 DILVDPIRVVQGDIGEANEDVTQVVELLLSGSDKWSWLTRRLVEFTSSGSVLIFVTKKTN 358

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            E   +       S+ ++HG M   ++  V+  FK     +L+AT V   G+D+     +
Sbjct: 359 SEELATNLTQEGYSLGLLHGDMDQSERNKVISDFKKSNMPILVATDVAARGLDIPSIRTV 418

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEE 623
           +  +         H++ GR GR  E      L     S  +   +  L+           
Sbjct: 419 VNYDVARDIDTHTHRI-GRTGRAGEKGVAYTLLTSKDSSFAGDLVRNLEGANQAVSKELM 477

Query: 624 DLKQRKE 630
           DL  +  
Sbjct: 478 DLAMQNP 484


>gi|67521618|ref|XP_658870.1| hypothetical protein AN1266.2 [Aspergillus nidulans FGSC A4]
 gi|74657573|sp|Q5BDW4|PRP5_EMENI RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|40746703|gb|EAA65859.1| hypothetical protein AN1266.2 [Aspergillus nidulans FGSC A4]
 gi|259488412|tpe|CBF87827.1| TPA: Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC
           3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5BDW4]
           [Aspergillus nidulans FGSC A4]
          Length = 1173

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 90/432 (20%), Positives = 157/432 (36%), Gaps = 55/432 (12%)

Query: 265 ILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ++  + F S T  Q  AI  I+           I     GSGKT+  LI M   ++    
Sbjct: 555 VIDKLGFASLTSIQAQAIPAIMSGRDV------IGVAKTGSGKTMAFLIPMFRHIKDQRP 608

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +IM P   LA Q ++  K + +   +      G  P   +   L+R     
Sbjct: 609 LENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKR----G 664

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K      +L  
Sbjct: 665 AEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMK------ILSN 718

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K    KPI+ V+   + +   I ++  V +E KK   
Sbjct: 719 VRPDRQTVLFSATFPRNMEALARKTLT-KPIEIVVGGRSVVAPEITQIVEVCNEEKKFVR 777

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  ++L             IHG    ID++S ++
Sbjct: 778 LLELLGNLYSTDENEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIE 837

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    +++  +A +     +H+  GR GR     + +  
Sbjct: 838 DFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 896

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEE---D--LKQRKEGEILGIKQSGM--PKFLIAQ 648
                 + S      LK +      A +   D  L++ K G+      SG          
Sbjct: 897 LTEDQERYSVDIAKALKQSGQEVPEAVQKLVDSFLEKVKAGK-EKASNSGFGGKGLERLD 955

Query: 649 PELHDSLLEIAR 660
            E   + +   R
Sbjct: 956 QERDAARMRERR 967


>gi|331012221|gb|EGH92277.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 559

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 142/373 (38%), Gaps = 46/373 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ +I  IL           I Q   G+GKT    + +   ++      QA+I+A
Sbjct: 28  EPSAIQQQSIPIILAGHD------MIGQAQTGTGKTAAFALPILHRIDPSKREPQALILA 81

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y  Q   + V  + G  P   + KA+       A I++ T     
Sbjct: 82  PTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN----GAQIVVATPGRLC 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLT 438
           D ++           L+L   DE  + G    L+          ++  A P   +T++ +
Sbjct: 138 DHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLE----------VIFKAMPETRQTVLFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I  I E+   R P    I    +    IE+  +++   +K   +   +E +   
Sbjct: 188 ATLPQSIRAIAERHL-RDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFD 246

Query: 499 NFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                V          S  E      A ++G ++   +E V+DS K+G   +++AT V  
Sbjct: 247 ALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   + +   +  +   + +H++ GR GR       +LL  P         L V++
Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGREGRALLLVTPRE----RRMLQVIE 361

Query: 613 NTEDGFLIAEEDL 625
               G  +AE  L
Sbjct: 362 RVT-GQKVAEVRL 373


>gi|170756598|ref|YP_001781574.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str.
           Okra]
 gi|169121810|gb|ACA45646.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum B1 str. Okra]
          Length = 376

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 129/369 (34%), Gaps = 39/369 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  Q+ +I      M  KN    I +   G+GKTL  L+ M   +       Q +I+ 
Sbjct: 24  EPTPIQKESI------MLIKNGNDVIAEAQTGTGKTLAFLLPMFENISPDINAIQGLIIT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  +   + +    G      + K L        H++I T     D
Sbjct: 78  PTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKL----KNNIHLVIATPGRLLD 133

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPRT--LV 436
            +            L+L   DE    G +   R  +         L  +AT       L 
Sbjct: 134 HLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATMNSEVKKLA 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
             ++ D  +  I ++    K IK V+I      +  +  K++  E      I  +     
Sbjct: 194 YKNMRDPKLIIIEKEEVTLKNIKQVLIETTDRRKQEDLCKILDEENPFMAIIFCRT---- 249

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+           +   +HG ++   +E +M SFKN   + LIAT V   G+D
Sbjct: 250 ----KRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + +   +      + +H++ GR GR  E     L   P   +        +K    
Sbjct: 306 ITGVTHVFNYDIPENAESYIHRI-GRTGRAGEKGYTFLFVAPKDEQTLGMIEREIK---- 360

Query: 617 GFLIAEEDL 625
            F I  + L
Sbjct: 361 -FKIPRKTL 368


>gi|157960395|ref|YP_001500429.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157845395|gb|ABV85894.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 623

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 137/371 (36%), Gaps = 31/371 (8%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  PT  Q ++I+ ++ +         + Q   G+GKT    + +  +++     
Sbjct: 21  LDDLGYEKPTPIQAASIEPLMANKD------ILGQAQTGTGKTGAFALPLLNSIDPNTNA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    Y +    + V  I G      +  AL R       II+
Sbjct: 75  PQILVLAPTRELAVQVAEAFASYAKYMKGLHVLPIYGGQSMQQQLNALRR----GPQIIV 130

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT     D ++   L L  +        +    L          ++  TP  R L L S 
Sbjct: 131 GTPGRVMDHMRRGTLKLDTLKAMVL--DEADEMLKMGFIDDIEWILEHTPKTRQLALFSA 188

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
              +  K         P+   I       E IE+  V +S+  K   +   +E +K    
Sbjct: 189 TMPEQIKRVANKYLDNPVHVKIAATTSTVETIEQRFVQVSQHNKLEALVRVLEVEKTEGI 248

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                   S VE    L     +S + +HG M+   +E  ++  K G   ++IAT V   
Sbjct: 249 IIFVRTRNSCVELAEKLEARGYAS-SPLHGDMNQQARERAIEQLKRGQLDIIIATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV     ++  +  +   A +H++ GR GR       IL       +      ++ + 
Sbjct: 308 GLDVERIGHVVNYDIPYDTEAYVHRI-GRTGRAGRTGMAILFVTH---REMRMLRTIERA 363

Query: 614 TEDGFLIAEED 624
           T     IA  D
Sbjct: 364 TNS--RIAPMD 372


>gi|70731602|ref|YP_261343.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5]
 gi|68345901|gb|AAY93507.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           fluorescens Pf-5]
          Length = 557

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 142/373 (38%), Gaps = 46/373 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ +I  IL           I Q   G+GKT    + +   ++      QA+I+A
Sbjct: 28  EPSAIQQQSIPIILAGHD------MIGQAQTGTGKTAAFALPILHRIDPSKREPQALILA 81

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y  Q   + V  + G  P   + KA+       A I++ T     
Sbjct: 82  PTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN----GAQIVVATPGRLC 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLT 438
           D ++           L+L   DE  + G    L+          ++  A P   +T++ +
Sbjct: 138 DHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLE----------VIFKAMPETRQTVLFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I  I E+   + P    I    +    IE+  +++   +K   +   +E +   
Sbjct: 188 ATLPQSIRAIAERHL-KDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFD 246

Query: 499 NFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                V          S  E      A ++G ++   +E V+DS K+G   +++AT V  
Sbjct: 247 ALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   + +   +  +   + +H++ GR GR       +LL  P         L V++
Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGREGRALLLVTPRE----RRMLQVIE 361

Query: 613 NTEDGFLIAEEDL 625
               G  +AE  L
Sbjct: 362 RVT-GQKVAEVRL 373


>gi|34498347|ref|NP_902562.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34104201|gb|AAQ60560.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 439

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 131/361 (36%), Gaps = 40/361 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQAV 325
           PT  Q  A+   +           ++    GSGKT   L+     +         G + +
Sbjct: 24  PTAVQAEAVPAAIAGRD------LLVSAQTGSGKTAAFLLPALTKLSERSTAKGQGPRVL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P   LAQQ  +   +Y ++   +    + G     ++ +AL R       +I+ T  
Sbjct: 78  VLTPTRELAQQVEKNALEYGKDLRWMRTACLVGGSSFGYQIRALSRP----IDLIVATPG 133

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLT 438
              D      I + +L ++++DE  R      +   +        ++ ATP   +T++ +
Sbjct: 134 RLMDHMRSGRIDFSRLEMLVLDEADRMLDMGFIDDIEA-------IVKATPETRQTVLFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +  D  + ++ EK   R P +  I         IE   +   +    + +   I ++   
Sbjct: 187 ATLDGIVGRMAEK-MTRDPQRIEIARTETSGGTIEEHLLYADDLNHKHRLLDYILKESGF 245

Query: 499 NF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +        ++  E           S A +HG M    +   ++  + G  K+L+AT V 
Sbjct: 246 DQCVIFSATKAYSEELADKLSDQGYSAACLHGDMPQSWRNRTLNDLRRGRIKVLVATDVA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV   + ++  +        +H++ GR GR     + I L               L
Sbjct: 306 ARGIDVPTITHVVNFDLPKQAEDYVHRI-GRTGRAGRDGTAITLAESKEFHKVRRIEQYL 364

Query: 612 K 612
           K
Sbjct: 365 K 365


>gi|46116580|ref|XP_384308.1| hypothetical protein FG04132.1 [Gibberella zeae PH-1]
 gi|91206540|sp|Q4IF76|DBP2_GIBZE RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 555

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 78/366 (21%), Positives = 142/366 (38%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       L           +   + GSGKTL   +     + A        G  
Sbjct: 156 APTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPSIVHINAQPLLAPGDGPI 209

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  E +KK+ ++++I    + G +P+  + + L R       + I T 
Sbjct: 210 VLVLAPTRELAVQIQEEMKKFGRSSRIRNTCVYGGVPKGPQIRDLSR----GVEVCIATP 265

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D ++  K        L+L   D     G   Q R  + Q       L+ +AT    
Sbjct: 266 GRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSATWPKE 325

Query: 434 TLVLTSLGDIDISKI----TEKPAGR--KPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              L S    D  ++     E  A      I  V+  + + D +I+ ++ V+   +    
Sbjct: 326 VRALASDFLQDFIQVNIGSMELAANHRITQIVEVVTEMEKRDRMIKHMEKVMENKENKIL 385

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            R   E    L +    +++I HG     +++ V+D FK G   +++A
Sbjct: 386 IFV-------GTKRVADEITRFLRQDGWPALSI-HGDKQQNERDWVLDQFKTGKSPIMVA 437

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV + + ++  +  +     +H++ GR GR   + + I L+     K +   
Sbjct: 438 TDVASRGIDVRNITHVLNYDYPNNSEDYIHRI-GRTGRAGAMGTAITLFTTDNQKQARDL 496

Query: 608 LSVLKN 613
           ++VL+ 
Sbjct: 497 VNVLQE 502


>gi|322711331|gb|EFZ02905.1| ATP-dependent RNA helicase dbp-2 [Metarhizium anisopliae ARSEF 23]
          Length = 545

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 73/366 (19%), Positives = 139/366 (37%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       L           +   + GSGKTL   +     + A        G  
Sbjct: 158 APTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPI 211

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  + I K+ ++++I    + G +P+  + + L R       + I T 
Sbjct: 212 VLVLAPTRELAVQIQQEITKFGRSSRIRNTCVYGGVPKGPQIRDLSR----GVEVCIATP 267

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D ++  K        L+L   D     G   Q R  + Q       L+ +AT    
Sbjct: 268 GRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMYSATWPKE 327

Query: 434 TLVLTSLGDIDISKI----TEKPAGR--KPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              + +    D  ++     +  A      I  V+  + + D +I+ L+ V+   +    
Sbjct: 328 VRAMAADFQTDFIQVNIGSMDLSANHRITQIVEVVSDMEKRDRMIKHLEQVMENKENKIL 387

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            R   +    L +    +++I HG     +++ V+D FK G   +++A
Sbjct: 388 IFV-------GTKRVADDITRFLRQDGWPALSI-HGDKQQNERDWVLDQFKTGKSPIMVA 439

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV + + ++  +  +     +H++ GR GR     + I  +     K +   
Sbjct: 440 TDVASRGIDVRNITHVLNYDYPNNSEDYIHRI-GRTGRAGAKGTAITFFTTDNQKQAREL 498

Query: 608 LSVLKN 613
           ++VL+ 
Sbjct: 499 VNVLQE 504


>gi|300088260|ref|YP_003758782.1| DEAD/DEAH box helicase domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527993|gb|ADJ26461.1| DEAD/DEAH box helicase domain protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 429

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 82/358 (22%), Positives = 139/358 (38%), Gaps = 32/358 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA----VIM 327
            PT  Q  AI   LQ          I     G+GKT   ++ M   +  G +     +I+
Sbjct: 23  EPTPIQAQAIPPALQGRD------LIGLAQTGTGKTTAFVLPMLQRLLRGPRGKLRGLIV 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LA+Q Y+ +K  +Q+T +    I G +    ++  L         I+I       
Sbjct: 77  SPTRELAEQIYDSVKTLSQHTGLRAMAIYGGVGMEPQKAKLRA----GTDIVIACPGRLL 132

Query: 388 DSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           D +      +  + ++++DE  R      L          +L     P  +TL+ ++   
Sbjct: 133 DHVWQGTIDFDDVEMLVIDEADRMFDMGFLPDI-----RKILRCLVRPERQTLLFSATMP 187

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW--ICPQIEE----KK 496
            D+ K+ ++     P+   I  +     V   L  V  + K A    I  QIE+      
Sbjct: 188 ADVRKLVQEFLT-DPVTVQIGTVAPAVTVTHALYPVRQDLKTALLKQILRQIEDAGSVLV 246

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +  +   ER          ++A I G +S   +++ +D FK+GT K+L+AT +   GID
Sbjct: 247 FTRTKHRTERVAIALRQAGYAVASIQGNLSQYRRQAALDGFKDGTFKVLVATDIASRGID 306

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           V D S +I  +      A +H++ GR GR            P           +LK T
Sbjct: 307 VSDVSHVINYDMPDTADAYIHRI-GRTGRIGRSGDAFTFVTPEDESMVRALEKLLKTT 363


>gi|226315226|ref|YP_002775122.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226098176|dbj|BAH46618.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 513

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 96/439 (21%), Positives = 166/439 (37%), Gaps = 50/439 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L N+ F   T  Q+  +   LQ          I Q   G+GKT    I +   ++     
Sbjct: 17  LSNMGFEEATAIQDQTVPVALQGRD------LIGQAQTGTGKTAAFGIPLIERMDETSGN 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q V++ P   LA Q  E I K  Q   I    I G      + KAL++    +  II+ 
Sbjct: 71  IQGVVLTPTRELAVQVAEEINKIAQFKNISALPIYGGQDITRQIKALKK----RPQIIVA 126

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPI 431
           T   F D ++   + L  +        DE    G     +  L +   +   LL +AT  
Sbjct: 127 TPGRFMDHMRRRTIRLDAIEVVVLDEADEMLNMGFIDDIKEILKEVPESRQTLLFSAT-- 184

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
                        I +I ++      I  V      +   I +  + ++E +K   +C  
Sbjct: 185 ---------MPRAIQEIAQQFMNEPTIIQVKAKEVTVPN-IAQEYMEVAEKQKFDVLCRL 234

Query: 492 IEEKK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++         F     R + L E  T        IHG ++   ++SV+  FK GT ++L
Sbjct: 235 LDIHSPELAIIFGRTKRRVDELSEALTKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEVL 294

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-PLSKNS 604
           +AT V   G+D+   + +   +      + +H++ GR GR  +    I       +    
Sbjct: 295 VATDVAARGLDISGVTHVFNFDIPQDSESYVHRI-GRTGRAGKTGLAITFVTSREIDHLR 353

Query: 605 YTRLSVLKNTEDGFLIAE-EDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA---- 659
               +  +  E   + +  E L+ +++  +  I ++     L A   L + LLE      
Sbjct: 354 LIERTTNRRMERRAVPSMAEALEGQQKMTVDKILEASGRDDLSAYKTLAEQLLEDVDSVT 413

Query: 660 -RKDAKHILTQDPDLTSVR 677
               A  +LT++PD+T VR
Sbjct: 414 LVSAALKLLTKEPDMTPVR 432


>gi|104773512|ref|YP_618492.1| DEAD-box ATP dependent DNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116513507|ref|YP_812413.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103422593|emb|CAI97196.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116092822|gb|ABJ57975.1| Superfamily II DNA and RNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325125143|gb|ADY84473.1| ATP-dependent RNA helicase-like protein [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 483

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 131/348 (37%), Gaps = 37/348 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ----- 323
            F   T  Q   I   L           I Q   G+GKT    + +   ++   Q     
Sbjct: 20  GFEEATPIQAQTIPLALAGQDV------IGQAQTGTGKTAAFGLPILQKLDLDKQEQAIQ 73

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA Q  E + +  ++ +  V+++ G      + + L+++      I++GT 
Sbjct: 74  AIVIEPTRELAIQTQEELFRLGRDEKAKVQVVYGGADIGRQIRDLKKV----PEILVGTP 129

Query: 384 ALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PIP 432
               D ++   + L  V        DE    G  Q +   LT        LL +AT P P
Sbjct: 130 GRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQTLLFSATMPKP 189

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            + L    + D  + KI  K      I    + +   ++     +++  E      +  +
Sbjct: 190 IQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLIDVENPDLAVVFGR 249

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            + + +   R +V R          + A IHG ++   +  V+  FK G   +L+AT V 
Sbjct: 250 TKRRVDELTRGLVAR--------GYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDVA 301

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 302 ARGLDISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGKSGMSVTFVTPN 348


>gi|49477717|ref|YP_036595.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118477863|ref|YP_895014.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196033783|ref|ZP_03101194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196043209|ref|ZP_03110447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225864437|ref|YP_002749815.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|228927528|ref|ZP_04090581.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228946079|ref|ZP_04108415.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229122021|ref|ZP_04251237.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201]
 gi|49329273|gb|AAT59919.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118417088|gb|ABK85507.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|195993463|gb|EDX57420.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196025518|gb|EDX64187.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225786741|gb|ACO26958.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|228661364|gb|EEL16988.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201]
 gi|228813592|gb|EEM59877.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228832136|gb|EEM77720.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 450

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|311104225|ref|YP_003977078.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
 gi|310758914|gb|ADP14363.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
          Length = 493

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 135/363 (37%), Gaps = 40/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
           +PT  Q  AI  +++          +     G+GKT    + +   +             
Sbjct: 39  TPTPIQAQAIPVVVEGRDV------MGAAQTGTGKTAAFTLPILHRLMPLANTSASPARH 92

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q YE +K+Y++ T +   ++ G +    +++AL R       +++
Sbjct: 93  PVRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRGCE----VLV 148

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D ++   + L  V     DE  R      L   +       ++       + L
Sbjct: 149 ATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLE------RIIRLLPAQRQGL 202

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I K+        P++  +   N     I ++   +    K   +   ++ +
Sbjct: 203 LFSATFSNEIRKLGRSYLNH-PVEIEVAARNATANTITQIAYKMPSDAKRAAVVHLVKSR 261

Query: 496 KES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +      N +    R     E        IHG  +  D+   +++FK G  ++L+AT 
Sbjct: 262 GLNQVIVFSNTKIGTARLARDLERDGVKAESIHGDKTQADRMKALEAFKAGELEVLVATD 321

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV     +I  +  +     +H++ GR GR       I L+ P   +       
Sbjct: 322 VAARGLDVAGVPCVINYDLPYNAEDYVHRI-GRTGRAGASGEAIALFTPDEERFLLDIEK 380

Query: 610 VLK 612
           ++K
Sbjct: 381 LIK 383


>gi|320323321|gb|EFW79409.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327518|gb|EFW83530.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330876701|gb|EGH10850.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 559

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 142/373 (38%), Gaps = 46/373 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ +I  IL           I Q   G+GKT    + +   ++      QA+I+A
Sbjct: 28  EPSAIQQQSIPIILAGHD------MIGQAQTGTGKTAAFALPILHRIDPSKREPQALILA 81

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y  Q   + V  + G  P   + KA+       A I++ T     
Sbjct: 82  PTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN----GAQIVVATPGRLC 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLT 438
           D ++           L+L   DE  + G    L+          ++  A P   +T++ +
Sbjct: 138 DHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLE----------VIFKAMPETRQTVLFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I  I E+   R P    I    +    IE+  +++   +K   +   +E +   
Sbjct: 188 ATLPQSIRAIAERHL-RDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFD 246

Query: 499 NFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                V          S  E      A ++G ++   +E V+DS K+G   +++AT V  
Sbjct: 247 ALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   + +   +  +   + +H++ GR GR       +LL  P         L V++
Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGREGRALLLVTPRE----RRMLQVIE 361

Query: 613 NTEDGFLIAEEDL 625
               G  +AE  L
Sbjct: 362 RVT-GQKVAEVRL 373


>gi|289434134|ref|YP_003464006.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170378|emb|CBH26918.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 526

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 127/350 (36%), Gaps = 39/350 (11%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
             + F   T  QE  I   L           I Q   G+GKT    + M   ++      
Sbjct: 20  NRMGFEEATPIQEKTIPLGLAGKD------LIGQAQTGTGKTAAFGLPMIHKIDQKSNNV 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+AP   LA Q  E + K + +  + V  + G    + + ++L++       I++GT
Sbjct: 74  QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKF----PQIVVGT 129

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I    L L  V        DE    G    +           +L       +T
Sbjct: 130 PGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDI---------ETILKEVPAERQT 180

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I +I E+     P    I        +IE+  V + E +K   +   ++ 
Sbjct: 181 LLFSATMPDPIRRIGERFM-HSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDV 239

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +       F     R + L             IHG ++   + SV+  FK G   +L+AT
Sbjct: 240 QAPELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   + +   +      + +H++ GR GR  +    I    P
Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGMAITFVQP 348


>gi|257792189|ref|YP_003182795.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|257476086|gb|ACV56406.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
          Length = 508

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 129/367 (35%), Gaps = 42/367 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-- 323
             + +  PT  Q  AI  +L+          I     G+GKT   L+ + + +  G +  
Sbjct: 18  ERLGYENPTPVQLQAIPLVLEGRD------LIAAASTGTGKTAAFLLPILSTLPRGKRGK 71

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
                ++++P   LAQQ  +   + T+ T   V  + G  P   +   + R       ++
Sbjct: 72  RAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINEIRR----GTDVL 127

Query: 380 IGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTAT 429
           I T     D +            L+L   D     G    +             LL +AT
Sbjct: 128 IATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTLLFSAT 187

Query: 430 PIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                +  + + L D  + +I       + ++  ++PI    +      ++  +G     
Sbjct: 188 IDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQALLEEKGSDRVI 247

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +  +         ++  E               IH   S   ++  +D+F+ G   +L+A
Sbjct: 248 VFART--------KNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVA 299

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V+  GIDV D   +I  +        +H++ GR GR  E    +       ++ S   
Sbjct: 300 TDVLARGIDVPDVDHVINFDLPDMPEDYVHRI-GRTGRAGEQGFAVSFV----TRESRRT 354

Query: 608 LSVLKNT 614
           +S ++  
Sbjct: 355 MSDIEKL 361


>gi|242310089|ref|ZP_04809244.1| ATP-dependent RNA helicase [Helicobacter pullorum MIT 98-5489]
 gi|239523386|gb|EEQ63252.1| ATP-dependent RNA helicase [Helicobacter pullorum MIT 98-5489]
          Length = 504

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 148/383 (38%), Gaps = 44/383 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            P+  Q+  I  IL  +        I Q   G+GKT    + +   ++  G  +A+++AP
Sbjct: 34  EPSPIQKEVIPIILDGLDV------IAQAQTGTGKTAAFALPLVNGLKHNGSIEALVIAP 87

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L  Q  + I K  +  ++    + G  P   + + L +    +  I+I T     D 
Sbjct: 88  TRELVMQIGDEIFKLGKYNKVRTVSLFGGQPIQRQVELLAK----KPQIVIATPGRLLDH 143

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           ++  +L        +L   DE    G    ++                   +TL+ ++  
Sbjct: 144 LRNGRLKKFAPQIVVLDESDEMLDMGFLDDIEEIFSYLPSE---------RQTLLFSATM 194

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---KES 498
              I  + +K     P    I P +  ++ I +   +++E ++   I   I+ +   K  
Sbjct: 195 PTPIKHLAQK-ILHNPKLVKITPSDTTNQDISQRYYIINEQEREDAIVRLIDSEMPTKAI 253

Query: 499 NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F  + +  + L E           +HG M   +++  + +FK+ +  +L+AT +   G+
Sbjct: 254 IFTRMKKEADLLCERLVDRGYKAGALHGDMEQRERQKSIKAFKDSSVNILVATDIAARGL 313

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+   S +   +      + +H++ GR GR  +    I L  P           + +NT+
Sbjct: 314 DISGVSHVFNFHIPLNPESYVHRI-GRTGRAGKKGVAITLATP---LEFKELRRIKENTK 369

Query: 616 DGFLIAE----EDLKQRKEGEIL 634
               + E    +D   +K+G +L
Sbjct: 370 AKIELYEIPNLQDTLDKKDGNLL 392


>gi|172039349|ref|YP_001805850.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
 gi|171700803|gb|ACB53784.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
          Length = 480

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 139/364 (38%), Gaps = 34/364 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L+ + F  PT+ QE AI  +L+          + Q   G+GKT    + +   ++   + 
Sbjct: 18  LQTLGFESPTEIQEKAIPLLLEGHDV------LGQSQTGTGKTAAYSLPILEQIDTRNSN 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LAQQ  E +K ++   ++ +  + G      + ++LER       I++G
Sbjct: 72  VQALILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIRSLER----GVQIVVG 127

Query: 382 THALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D ++  KL+L  +     DE         +   +        ++  TP  R   
Sbjct: 128 TPGRVIDLLERKKLVLDSLRWAVLDEADEMLSMGFIDDVKT-------ILRKTPDARNTA 180

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
             S       +       + P+   +         I++   ++  G         I E +
Sbjct: 181 CFSATMPREIRDLVNQFLKSPVTVSVERTQAAPTRIDQHLYMVPRGWSKRKALQPILEIE 240

Query: 497 ESNFRSVVER-------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +     +  R         S  +    S+   HG +S   +E ++  F+ G  KL++AT 
Sbjct: 241 DPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFREGKIKLVVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   G+DV + S +I  +        +H++ GR GR  +  + I L  P   +       
Sbjct: 301 IAARGLDVENLSHVINYDLPDNSETYIHRI-GRTGRAGKTGTAISLVEPIDRRMVRQIEK 359

Query: 610 VLKN 613
            L+ 
Sbjct: 360 RLRQ 363


>gi|88858341|ref|ZP_01132983.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein
           family protein [Pseudoalteromonas tunicata D2]
 gi|88819958|gb|EAR29771.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein
           family protein [Pseudoalteromonas tunicata D2]
          Length = 413

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 141/374 (37%), Gaps = 25/374 (6%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                + +  ++ Q +      +PT  Q +AI +ILQ          +     G+GKT  
Sbjct: 1   MGFAALGLNQQLVQALTECGYDTPTPIQTAAIGEILQGKDV------MAGAQTGTGKTAA 54

Query: 310 ALIAMAAAVEAGG------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
             + +   +          + +++ P   LAQQ +   +KY Q++++   +  G +    
Sbjct: 55  FALPILQRLAEQPERKGQLRTLVLTPTRELAQQVFASFEKYGQHSELTAALAYGGVSIGE 114

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           + KA++        I++ T     D +    + L  V +   F    R+         + 
Sbjct: 115 QIKAIKA----GVDIMVATPGRLLDHLVKGTVNLSNV-QYLVFDEADRMLDMGFIDEINN 169

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           +L       +TL+ ++  D  I K+++K    +P+   +   N+    +E++   +   +
Sbjct: 170 ILRRLPKERQTLLFSATFDDAIFKLSKKLLN-QPVLIEVNQRNQAASEVEQIVYAVDADR 228

Query: 484 KAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSF 537
           K   I   I  K       F    +  + L +           IHG  S   ++  +  F
Sbjct: 229 KRELISHLIGAKNWQQVLVFTRTKQTADELAKEMCKDGLKTQAIHGDKSQGARDKALSEF 288

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  ++L+AT V   GID+     +I     +     +H++ GR GR  E    I L  
Sbjct: 289 KEGKTRVLVATDVAARGIDIQQLQYVINYELPYIAEDYIHRI-GRTGRAGEKGLAISLLS 347

Query: 598 PPLSKNSYTRLSVL 611
              +       +VL
Sbjct: 348 IDENWLLEEIEAVL 361


>gi|168179718|ref|ZP_02614382.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|182669435|gb|EDT81411.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
          Length = 376

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 79/369 (21%), Positives = 128/369 (34%), Gaps = 39/369 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE +I      M  KN    I +   G+GKTL  L+ M   +       Q +I+ 
Sbjct: 24  EPTPIQEESI------MLIKNGNDVIAEAQTGTGKTLAFLLPMFENISPDINAIQGLIIT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  +   + +    G      + K L        H++I T     D
Sbjct: 78  PTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKL----KNNIHLVIATPGRLLD 133

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPRT--LV 436
            +            L+L   DE    G +   R  +         L  +AT       L 
Sbjct: 134 HLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATMNSEVKKLA 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
             ++ D  +  I ++    K IK V+I      +  +  K++  E      I  +     
Sbjct: 194 YKNMRDPKLIIIEKEEVTLKNIKQVLIETTDRRKQEDLCKILDEENPFMAIIFCRT---- 249

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+           +   +HG ++   +E +M SFKN   + LIAT V   G+D
Sbjct: 250 ----KRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + +   +      + +H++ GR GR  E     L   P   +        +K    
Sbjct: 306 ITGVTHVFNYDIPENAESYIHRI-GRTGRAGEKGYTFLFVAPKDEQTLGMIEKEIK---- 360

Query: 617 GFLIAEEDL 625
            F I    L
Sbjct: 361 -FKIPRRAL 368


>gi|124381735|ref|YP_001025050.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei NCTC 10229]
 gi|126447168|ref|YP_001079394.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei NCTC 10247]
 gi|254356161|ref|ZP_04972438.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei 2002721280]
 gi|126240022|gb|ABO03134.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei NCTC 10247]
 gi|148025144|gb|EDK83313.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei 2002721280]
 gi|261826475|gb|ABN00540.2| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei NCTC 10229]
          Length = 463

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 169/461 (36%), Gaps = 62/461 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 23  LAQLGYTDMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARRFD 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    + V  + G  P   + ++LE      AHII+
Sbjct: 77  VQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIIV 132

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 133 GTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQ------CPPTRQTL 186

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   +   
Sbjct: 187 LFSATYPDGIAKLSQQFLRHP--KRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHY 244

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 245 RPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 305 VAARGLDIAQLEAVINVDVTPDPEVYVHRI-GRTGRADQDGWALSLASMNEMGRVGGIEQ 363

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILGIKQSGMPKFLIAQP 649
            L    +   +A              E L+           G++LG   +G   F  AQ 
Sbjct: 364 ALAREVEWHPLAELKAGGDAPLLPPMETLQILGGRKDKIRPGDVLGAL-TGDAGFSGAQI 422

Query: 650 -----ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                    + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 423 GKINVTEFSTYVAVERGIARDALRKL-NAGKIKGKRVKVRL 462


>gi|194477246|ref|YP_002049425.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
 gi|171192253|gb|ACB43215.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
          Length = 631

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 140/360 (38%), Gaps = 35/360 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             +  +I Q +       P+  Q +AI +++           + Q   G+GKT    + +
Sbjct: 66  FGLNAEILQAVTEKGYKQPSPIQAAAIPELMLGRD------LVGQAQTGTGKTAAFALPL 119

Query: 315 AAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALER 370
            A ++      Q +++AP   LA Q  +    Y  +   I V  + G      +   L+R
Sbjct: 120 LARMDPDQRSPQVLVLAPTRELAVQVADSFSTYAAHLPHIRVLPVYGGADFRDQINRLKR 179

Query: 371 IAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLT--QKATA 420
                  +++GT     D ++           L+L   DE  R G    ++    Q    
Sbjct: 180 ----GIQVVVGTPGRVMDHMRQGTLDLSGLRVLVLDEADEMLRMGFIDDVEWIIEQLPKQ 235

Query: 421 PHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             V+L +AT     R + L  L +     I +K +    I+   + ++   ++    +V+
Sbjct: 236 RQVVLFSATMPTEIRRISLNYLNNPAEITIRQKGSDASRIRQRYLMVHAPHKLEALNRVL 295

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            +E  +   I  +         +++        E     +A+++G ++   +E  ++  +
Sbjct: 296 EAETGEGVIIFGRT--------KAITVTIAESLELTGHDVAVLNGDVAQSQRERTIERLR 347

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G+  +L+AT V   G+DV   S++I  +      A +H++ GR GR       IL   P
Sbjct: 348 KGSINILVATDVAARGLDVDRVSLVINYDIPFDSEAYVHRI-GRTGRAGRTGDAILFLTP 406


>gi|326505994|dbj|BAJ91236.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 685

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 66/381 (17%), Positives = 137/381 (35%), Gaps = 54/381 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +PT  Q+ AI  I+       R   +     GSGKT   L+ +   +   G A       
Sbjct: 222 TPTPVQKYAIPIII------GRRDVMACAQTGSGKTAAFLVPILNQIYEKGPAAYNVGPK 275

Query: 325 ----------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                     +I+AP   LA Q Y+  KK+   +++   ++ G      + + LE+    
Sbjct: 276 LQSRRKYPLGLILAPTRELATQIYDEAKKFAYRSRVRPCVVYGGSHVMDQIRDLEQ---- 331

Query: 375 QAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT-----QKATAP 421
             H+++ T     D ++  K        L+L   D     G + +++             
Sbjct: 332 GCHLLVATPGRLVDMLERGKIGLDFCRYLVLDEADRMLDMGFETQIRRIVEKDSMPPPGD 391

Query: 422 HVLLMTATPIPRTLVLTSLGDID------ISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
              LM +   P+ + + +   +D      I ++             +   N+   +++ L
Sbjct: 392 RQTLMFSATFPKEIQMLARDFLDNYIFLAIGRVGSTSENITQKIVWVEDRNKRSYLLDLL 451

Query: 476 KVVLSEGKKAY-WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
                  + A   I   +E KK        +            +  IHG  +  ++E  +
Sbjct: 452 NATPIRSQPAESLILVFVETKK------GADSLEEFLYSNGYPVTSIHGDRTQREREDAL 505

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            SF++G   +L+AT V   G+D+   + +I  +        +H++ GR GR   +     
Sbjct: 506 KSFRSGNTPVLVATAVAARGLDIPHVTHVINYDLPSDVEEYVHRI-GRTGRMGNLGLATS 564

Query: 595 LYHPPLSKNSYTRLSVLKNTE 615
            ++      +   + ++  ++
Sbjct: 565 FFNDKNRNLTRDLMELITESK 585


>gi|325833432|ref|ZP_08165881.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
 gi|325485356|gb|EGC87825.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
          Length = 560

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 143/423 (33%), Gaps = 49/423 (11%)

Query: 218 FEWTSPARERLAYDELLAGQIALLLMR-------KQFKKEIGIPINVEGKIAQKILRNIP 270
           F      R+RL    + A        R       K+ +           + A   +  + 
Sbjct: 14  FAQCQRIRKRLESSAMHAAGAGATEKRASSAHEEKRKRIMQNFADLGLSEAALAAVERLG 73

Query: 271 FS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ------ 323
           +  PT  Q  AI  +L+          I     G+GKT   L+ + + +  G +      
Sbjct: 74  YENPTPVQLQAIPLVLEGRD------LIAAASTGTGKTAAFLLPILSTLPRGKRGKRAPR 127

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++++P   LAQQ  +   + T+ T   V  + G  P   +   + R       ++I T 
Sbjct: 128 VLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINEIRR----GTDVLIATP 183

Query: 384 ALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D +            L+L   D     G    +             LL +AT    
Sbjct: 184 GRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTLLFSATIDHS 243

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            +  + + L D  + +I       + ++  ++PI    +      ++  +G     +  +
Sbjct: 244 IQKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQALLEEKGSDRVIVFAR 303

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    ++  E               IH   S   ++  +D+F+ G   +L+AT V+
Sbjct: 304 T--------KNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVATDVL 355

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV D   +I  +        +H++ GR GR  E    +       ++ S   +S +
Sbjct: 356 ARGIDVPDVDHVINFDLPDMPEDYVHRI-GRTGRAGEQGFAVSFV----TRESRRTMSDI 410

Query: 612 KNT 614
           +  
Sbjct: 411 EKL 413


>gi|170053024|ref|XP_001862487.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
 gi|167873709|gb|EDS37092.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
          Length = 935

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 89/430 (20%), Positives = 155/430 (36%), Gaps = 47/430 (10%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI--- 269
              KDF    P+    + DE+   +  + +               EG   + ++  I   
Sbjct: 212 PFEKDFYVPHPSVMARSVDEVQLFRENMQVTVMGNTVPHPTQTFDEGNFPEFVINEINKQ 271

Query: 270 PF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------A 320
            F SPT  Q       L        M+ I Q   GSGKTL  ++     +          
Sbjct: 272 GFPSPTAIQAQGWPIAL----SGRDMVGIAQ--TGSGKTLAYMLPAIVHIAHQKPLQRGD 325

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRKALERIAHGQAHI 378
           G   +++AP   LAQQ    ++ +  +++  I    I G   +  + + LER       +
Sbjct: 326 GPIVLVLAPTRELAQQIQTVVRDFGTHSKPNIRYTCIFGGALKGPQVRDLER----GVEV 381

Query: 379 IIGTHALFQDSIQYY--------KLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTA 428
           +I T     D ++           L+L   D     G   Q R  + Q      VL+ +A
Sbjct: 382 VIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSA 441

Query: 429 TPIPRTLVLTSLGDIDISKIT----EKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGK 483
           T       L      D  +I        A     + V I   N  +  +  L   ++   
Sbjct: 442 TWPKEVQALAEDFLHDYIQINVGSLNLSANHNIHQIVDICEENEKEGKLLSLLKEIASDV 501

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               I   +E KK+       +   ++      + +I HG  S  +++ V+  F++G   
Sbjct: 502 NNKIII-FVETKKKVE-----DLLKNIVRDGYGATSI-HGDKSQSERDYVLQDFRHGKST 554

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+DV D   +I  +  +     +H++ GR GR     +    + P   + 
Sbjct: 555 ILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRI-GRTGRCSSFGTAYTFFTPGNGRQ 613

Query: 604 SYTRLSVLKN 613
           +   LSVL+ 
Sbjct: 614 ARELLSVLEE 623


>gi|160946735|ref|ZP_02093938.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270]
 gi|158447119|gb|EDP24114.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270]
          Length = 580

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 75/398 (18%), Positives = 147/398 (36%), Gaps = 39/398 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N+  ++ + ++      P+  Q+ AI  +L +         I Q   G+GKT    I +
Sbjct: 8   FNLSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNED------IIGQAQTGTGKTASFGIPI 61

Query: 315 AAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
              V       QA+++ P   L+ Q  E I K  +   + V  I G  P   + ++L+  
Sbjct: 62  VEKVNKNSKTTQAMVLCPTRELSIQVAEEISKLAKYKGVTVVPIYGGQPIERQIRSLKM- 120

Query: 372 AHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHV 423
                 +I+GT     D I+   L        +L   DE    G ++ ++          
Sbjct: 121 ---GVQVIVGTPGRVIDHIKRKTLKTENIKTFVLDEADEMFDMGFREDIEKIIGFLPYE- 176

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
                    +T   ++  D ++     +    +P    ++P       + +    L    
Sbjct: 177 --------RQTTFFSATMDHEMMDFAARY-QSEPRLIKVVPKELTVPKVTQYYFALKHNM 227

Query: 484 KAYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           K   +   ++ +         N + +V+   +  +        +HG +  I ++ VM+ F
Sbjct: 228 KLEILSRILDVQNPKLTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKF 287

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +N T  +L+AT V   GIDV D  ++I  +        +H++ GR  R     + I    
Sbjct: 288 RNSTIDILVATDVAARGIDVDDVDLVINYDMPQDVEYYVHRI-GRTARAGREGTAISFVS 346

Query: 598 P-PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL 634
           P  ++  S  +       E   +   +DL +R E   +
Sbjct: 347 PREMNTLSQIQKYTKTKIEKRDMPTLKDLIKRHEERFM 384


>gi|325568403|ref|ZP_08144770.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
           12755]
 gi|325158172|gb|EGC70325.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
           12755]
          Length = 508

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 89/441 (20%), Positives = 166/441 (37%), Gaps = 47/441 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE+ I   L           I Q   G+GKT    + M   ++      Q +
Sbjct: 20  GFEEATPIQEATIPLALAGKDV------IGQAQTGTGKTAAFGLPMLEKIDPANHQLQGL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E + +  ++ +I V+ + G      + + L+     + HI++GT   
Sbjct: 74  VIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLKD----RPHIVVGTPGR 129

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--R 433
             D I  + L L  V        DE    G  + +   ++Q       LL +AT  P  +
Sbjct: 130 MLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDVRQTLLFSATMPPAIK 189

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + +  + + +  +I  K      I    +     ++     +++  +  +   +  +  
Sbjct: 190 NIGVKFMKEPEHVQIKAKEMTADLIDQYYVRSKDYEKFDVMTRLLDVQSPELTIVFGRT- 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+      E        IHG +S   + SV+ SFK+G   +L+AT V   
Sbjct: 249 -------KRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILVATDVAAR 301

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   + +   +      + +H++ GR GR  +    +    P      +   ++ K 
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKGGMSVTFVTPNEMSYLHVIENLTKK 360

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH----DSLLEI--ARKDAKHIL 667
                    E  K+  +G++    +S   K      + +    D LLE   A+  A  +L
Sbjct: 361 RMTPMRPPTE--KEAFKGQLGAAIESVETKLDENGLDKYLQAADDLLERYSAQDLAALLL 418

Query: 668 ---TQDP-DLTSVRGQSIRIL 684
               +DP DL  V+    R L
Sbjct: 419 KTMAKDPADLEPVKITPERPL 439


>gi|317180053|dbj|BAJ57839.1| ATP-dependent RNA helicase [Helicobacter pylori F32]
          Length = 492

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ + + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|313619814|gb|EFR91407.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
           S4-378]
          Length = 518

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 131/348 (37%), Gaps = 35/348 (10%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
             + F   T  QE  I   L           I Q   G+GKT    + M   ++      
Sbjct: 20  NRMGFEEATPIQEKTIPLGLAGKD------LIGQAQTGTGKTAAFGLPMIHKIDQKNNNV 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+AP   LA Q  E + K + +  + V  + G    + + ++L++       I++GT
Sbjct: 74  QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK----NPQIVVGT 129

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L L  V        DE    G    +   L +       LL +AT P 
Sbjct: 130 PGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMPD 189

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    +   ++ +I  K      I+   + ++  ++     +++  +  +   +  
Sbjct: 190 PIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFG 249

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +   +        IHG ++   + SV+  FK G   +L+AT V
Sbjct: 250 RT--------KRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDV 301

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   + +   +      + +H++ GR GR  +    I    P
Sbjct: 302 AARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGMAITFVQP 348


>gi|168042111|ref|XP_001773533.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675235|gb|EDQ61733.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 600

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 128/375 (34%), Gaps = 45/375 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q+ AI   L           +     GSGKT      + A +          GG+
Sbjct: 167 KPTPVQKYAIPISLHGRD------LMACAQTGSGKTAAFCFPIIAGIMRNTPPGRPRGGR 220

Query: 324 -----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A+I++P   L+ Q  +  KK+   T I V +  G  P  ++ + +ER       I
Sbjct: 221 KALPLALILSPTRELSCQISDEAKKFAYQTGIRVVVAYGGAPVHNQLREMER----GVDI 276

Query: 379 IIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T     D ++  ++ L +V     DE  R          Q       + M      +
Sbjct: 277 LVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEP--QIRRIVEQMDMPPAGERQ 334

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    +I ++         I   +  +    ++I +    + +  K   +   I 
Sbjct: 335 TMLFSATFPREIQRLASDFLS-NYIFLAVGRVGSSTDLIVQRVEYVQDVDKRSMLMDLIH 393

Query: 494 EKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +                  +   +               IHG  S  ++E  + SF+ G
Sbjct: 394 AQSALAPPGQQTLTLVFVETKKGADALEDWLCRLGFPATTIHGDRSQQEREHALRSFRTG 453

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+D+   + ++  +        +H++ GR GR  +       ++   
Sbjct: 454 VTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRI-GRTGRAGKSGVATAFFNEKD 512

Query: 601 SKNSYTRLSVLKNTE 615
              +     ++  + 
Sbjct: 513 QALARPLTELMTESN 527


>gi|90409951|ref|ZP_01217968.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
           3TCK]
 gi|90329304|gb|EAS45561.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
           3TCK]
          Length = 462

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 86/455 (18%), Positives = 168/455 (36%), Gaps = 53/455 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ +   T  Q  ++  IL           I QG  GSGKT    + +   +      
Sbjct: 19  LTSLGYESMTPIQAQSLPHILAGEDV------IAQGKTGSGKTAAFGLGLLEKLNVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + I+K  +    I V  + G MP   +  +LE      AHII+
Sbjct: 73  VQSLVLCPTRELADQVAKEIRKLARTIHNIKVLTLCGGMPFGPQIGSLEH----GAHIIV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    ++ ++   L L  + E        R+       +   ++  A    +TL+ ++ 
Sbjct: 129 GTPGRIEEHVRKGTLNLDDL-EMLILDEADRMLEMGFQDSLDEIIDAAPQRRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
               I  I ++    KP+   +      D  I++    +   ++       +  K     
Sbjct: 188 YPPQIKSIADR-IMFKPVMAKV-ESTHDDSSIQQHFYKVDGNEQRLTALRLLLLKHRPES 245

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  R   E  + L ++  SSIA+ HG +   +++  +  F N +  +L+AT V  
Sbjct: 246 TVVFCNTKREAQEVSDDLVDYGFSSIAL-HGDLEQRERDQALVRFANKSTSVLVATDVAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+     +I  +        +H++ GR GR         L               L 
Sbjct: 305 RGLDIDSLDAVINYHLARDTEVHVHRI-GRTGRAGSKGVACSLISDKEHYKVAMLEDYLD 363

Query: 613 NTEDG-------------FLIAEEDLKQRK-------EGEILG--IKQSGMPKFLIAQPE 650
               G             F  A   L+           G+ILG    ++G+    + + +
Sbjct: 364 RAISGEALPSMDLLDQPTFRPAMTTLQIDGGKRQKIRPGDILGALTGENGIAGAQVGKIQ 423

Query: 651 LHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           + D  + + +  +  +  + +  D   ++G+S R+
Sbjct: 424 IFDNFAYVAVKSESVRAAMKKLED-GKLKGRSFRV 457


>gi|317181556|dbj|BAJ59340.1| ATP-dependent RNA helicase [Helicobacter pylori F57]
          Length = 492

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ S + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|330923164|ref|XP_003300130.1| hypothetical protein PTT_11286 [Pyrenophora teres f. teres 0-1]
 gi|311325925|gb|EFQ91808.1| hypothetical protein PTT_11286 [Pyrenophora teres f. teres 0-1]
          Length = 483

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 137/368 (37%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           +   + GSGKTL   +     + A        G  
Sbjct: 83  KPTAIQAQGWPMALSGRDV------VGVAETGSGKTLTYCLPAIVHINAQPLLAPGDGPI 136

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA Q  + I K+ ++++I    + G +P+  + + L R       + I T 
Sbjct: 137 VLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDLAR----GVEVCIATP 192

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D ++  K        L+L   D     G   Q R  + Q        + +AT    
Sbjct: 193 GRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMWSATWPKE 252

Query: 434 TLVLTSLGDIDISKI----TEKPAGR--KPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              L +    D  ++     +  A    + I  V     + D + + L+ ++S+      
Sbjct: 253 VRQLAADYQKDWIQVNIGSMDLSANHRIQQIVEVCTEFEKRDRMAKHLETIMSDKDNKIL 312

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            R   E    L +    +++I HG     +++ V++ FK G   +++A
Sbjct: 313 IFT-------GTKRVADEITRFLRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVA 364

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV + + +   +  +     +H++ GR GR     + I L+    SK +   
Sbjct: 365 TDVASRGIDVRNITHVFNYDYPNNSEDYVHRI-GRTGRAGANGTAITLFTTDNSKQARDL 423

Query: 608 LSVLKNTE 615
           + +L  ++
Sbjct: 424 VQILTESK 431


>gi|260663734|ref|ZP_05864622.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
 gi|260551785|gb|EEX24901.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
          Length = 495

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 65/341 (19%), Positives = 130/341 (38%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE  I  +L           I Q   G+GKT    +     V+      QA+I++P 
Sbjct: 28  TPIQEQTIPMVLAGKDV------IGQAQTGTGKTAAFGLPTIEHVDVENPAIQALIISPT 81

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + +  +  ++ V+++ G      + ++LE+       I++GT    +D +
Sbjct: 82  RELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLEK----NPQILVGTPGRLRDHL 137

Query: 391 QYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--LVLT 438
           +           L+L   DE    G  + +   + Q  +    LL +AT  P    + + 
Sbjct: 138 RRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQTLLFSATMPPEIKRIGVQ 197

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D    KI  K      +    +     ++     +++  +      +  + + + + 
Sbjct: 198 FMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMIDVQDPDLTIVFGRTKRRVDE 257

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             R ++ R          + A IHG ++   +  +M  FK G   +L+AT V   G+D+ 
Sbjct: 258 LSRGLIAR--------GYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVATDVAARGLDIS 309

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR       +    P 
Sbjct: 310 GVTHVYNYDIPSDPDSYVHRI-GRTGRAGHHGVSLTFVTPN 349


>gi|195069805|ref|XP_001997032.1| GH23229 [Drosophila grimshawi]
 gi|193906224|gb|EDW05091.1| GH23229 [Drosophila grimshawi]
          Length = 649

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 131/366 (35%), Gaps = 39/366 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              + ++ + + +     PT  Q  A+   L           I     GSGKT   +  +
Sbjct: 297 FGFDDQLLKSVRKAEYTQPTPIQAQAVPTALSGRD------IIGIAKTGSGKTAAFIWPL 350

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   +I+AP   L+ Q Y   KK+ +   I V    G   +  + K
Sbjct: 351 LTHLMDQRELRPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSK 410

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAP 421
           ALE+       I++ T     D ++       ++  +++DE  R          +     
Sbjct: 411 ALEQGCE----IVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNH 466

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                   P  +TL+ ++     I ++  +     P++ V   +N  ++ I +   V   
Sbjct: 467 VR------PDRQTLLFSATFKKRIERLA-RDILTDPVRIVQGDLNEANQDITQHVYVFPN 519

Query: 482 GKKAY--WICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
             + +   +C  ++   E         ++  E  ++       +  ++HG M   D+  V
Sbjct: 520 PLQKWNWLLCHLVKFLSEGGVLVFVTKKADAETVSNNLLLKEHNCLLLHGDMDQADRNKV 579

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  FK   C +L+AT V   G+D+     +I  +         H++ GR GR  E  +  
Sbjct: 580 IMQFKRKECDILVATDVAARGLDIPHIRNVINYDIARDIDTHTHRI-GRTGRAGEKGNAY 638

Query: 594 LLYHPP 599
            L    
Sbjct: 639 TLVTDK 644


>gi|76584014|gb|ABA53488.1| ATP-independent RNA helicase [Burkholderia pseudomallei 1710b]
          Length = 505

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 169/461 (36%), Gaps = 62/461 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 63  LAQLGYTDMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARRFD 116

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    + V  + G  P   + ++LE      AHII+
Sbjct: 117 VQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIIV 172

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 173 GTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQ------CPPTRQTL 226

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   +   
Sbjct: 227 LFSATYPDGIAKLSQQFLRHP--KRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHY 284

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 285 RPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATD 344

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 345 VAARGLDIAQLEAVINVDVTPDPEVYVHRI-GRTGRADQDGWALSLASMNEMGRVGGIEQ 403

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILGIKQSGMPKFLIAQP 649
            L    +   +A              E L+           G++LG   +G   F  AQ 
Sbjct: 404 ALAREVEWHPLAELKAGGDAPLLPPMETLQILGGRKDKIRPGDVLGAL-TGDAGFSGAQI 462

Query: 650 -----ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                    + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 463 GKINVTEFSTYVAVERGIARDALRKL-NAGKIKGKRVKVRL 502


>gi|53721181|ref|YP_110166.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei K96243]
 gi|121596589|ref|YP_990560.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei SAVP1]
 gi|126458103|ref|YP_001074245.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1106a]
 gi|162210105|ref|YP_336816.2| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1710b]
 gi|166999117|ref|ZP_02264963.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei PRL-20]
 gi|167722070|ref|ZP_02405306.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei DM98]
 gi|167741069|ref|ZP_02413843.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 14]
 gi|167818249|ref|ZP_02449929.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 91]
 gi|167826638|ref|ZP_02458109.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 9]
 gi|167848158|ref|ZP_02473666.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei B7210]
 gi|217422828|ref|ZP_03454330.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 576]
 gi|226198779|ref|ZP_03794343.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|242313771|ref|ZP_04812788.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1106b]
 gi|254182850|ref|ZP_04889443.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1655]
 gi|254189582|ref|ZP_04896092.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254264638|ref|ZP_04955503.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1710a]
 gi|254299641|ref|ZP_04967090.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei 406e]
 gi|52211595|emb|CAH37590.1| ATP-independent RNA helicase [Burkholderia pseudomallei K96243]
 gi|121224387|gb|ABM47918.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei SAVP1]
 gi|126231871|gb|ABN95284.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1106a]
 gi|157809522|gb|EDO86692.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei 406e]
 gi|157937260|gb|EDO92930.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184213384|gb|EDU10427.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1655]
 gi|217393736|gb|EEC33756.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 576]
 gi|225929219|gb|EEH25242.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|242137010|gb|EES23413.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1106b]
 gi|243064681|gb|EES46867.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei PRL-20]
 gi|254215640|gb|EET05025.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1710a]
          Length = 465

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 169/461 (36%), Gaps = 62/461 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 23  LAQLGYTDMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARRFD 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    + V  + G  P   + ++LE      AHII+
Sbjct: 77  VQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIIV 132

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 133 GTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQ------CPPTRQTL 186

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   +   
Sbjct: 187 LFSATYPDGIAKLSQQFLRHP--KRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHY 244

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 245 RPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 305 VAARGLDIAQLEAVINVDVTPDPEVYVHRI-GRTGRADQDGWALSLASMNEMGRVGGIEQ 363

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILGIKQSGMPKFLIAQP 649
            L    +   +A              E L+           G++LG   +G   F  AQ 
Sbjct: 364 ALAREVEWHPLAELKAGGDAPLLPPMETLQILGGRKDKIRPGDVLGAL-TGDAGFSGAQI 422

Query: 650 -----ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                    + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 423 GKINVTEFSTYVAVERGIARDALRKL-NAGKIKGKRVKVRL 462


>gi|315281538|ref|ZP_07870145.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
           S4-120]
 gi|307570401|emb|CAR83580.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
 gi|313609827|gb|EFR85263.1| dead-box ATP-dependent rna helicase ydbr [Listeria monocytogenes
           FSL F2-208]
 gi|313614811|gb|EFR88348.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
           S4-120]
          Length = 518

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 131/348 (37%), Gaps = 35/348 (10%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
             + F   T  QE  I   L           I Q   G+GKT    + M   ++      
Sbjct: 20  NRMGFEEATPIQEKTIPLGLAGKD------LIGQAQTGTGKTAAFGLPMIHKIDQKSNNV 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+AP   LA Q  E + K + +  + V  + G    + + ++L++       I++GT
Sbjct: 74  QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK----NPQIVVGT 129

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L L  V        DE    G    +   L +       LL +AT P 
Sbjct: 130 PGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMPD 189

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    +   ++ +I  K      I+   + ++  ++     +++  +  +   +  
Sbjct: 190 PIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFG 249

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +   +        IHG ++   + SV+  FK G   +L+AT V
Sbjct: 250 RT--------KRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDV 301

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   + +   +      + +H++ GR GR  +    I    P
Sbjct: 302 AARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGMAITFVQP 348


>gi|241563473|ref|XP_002401718.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215501910|gb|EEC11404.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 371

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 135/342 (39%), Gaps = 35/342 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQAVIMAPI 330
            PT+ Q+ +I   +           +     GSGKTL  L+ +  + ++    A+I+ P 
Sbjct: 21  EPTEIQKQSIPVAIAG------SDILASSQTGSGKTLAYLLPLIDSFIKNKTTALILVPT 74

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q +  + K T   +I   ++ G  P   +   L++       +IIGT     D +
Sbjct: 75  RELATQIHSTLNKVTTPYKINSAVLIGGEPMPKQFMQLKK----NPKVIIGTPGRIIDHL 130

Query: 391 QYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               L        +L  +D     G++++L+   K               + L+ ++   
Sbjct: 131 NRGSLKIDRIGITVLDEMDRMLDMGMKEQLEGINKFLPEK---------RQVLMFSATMP 181

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----E 497
             I  +++K     P++  +   N+    I++  + +S+ +K   +  Q+  ++      
Sbjct: 182 KHIIALSQKYLN-NPVRITVGATNKAAAEIKQESLHISDKEKFSELTKQLGNREGSVIIF 240

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++   + ++       IHG +S   +E V+ SF+    ++++AT V   G+D+
Sbjct: 241 VKTKRSADQLAKMLKYENHKAEAIHGDLSQHQRERVILSFRKSNHRIMVATDVAARGLDI 300

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
                +I  +        LH++ GR GR       +    P 
Sbjct: 301 PHTQHVINYDLPMCPEDYLHRI-GRTGRAGATGYALSFISPD 341


>gi|170046392|ref|XP_001850751.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
 gi|167869172|gb|EDS32555.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
          Length = 641

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 67/363 (18%), Positives = 132/363 (36%), Gaps = 34/363 (9%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GG 322
             PT  Q+ AI  I   M +++ M        GSGKT   L+ +   +            
Sbjct: 238 LKPTPIQKYAIPII---MDKRDLM---ACAQTGSGKTAAFLLPIINTLLNDNDDMTPGNP 291

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             V++AP   LA Q  E  +K+ + T + V +  G     H+        +   HI++ T
Sbjct: 292 FVVVVAPTRELALQISEEARKFARGTILKVVVAYGGTATRHQI----DNVNNGCHILVAT 347

Query: 383 HALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D +      + ++  V++DE  R      +   +K        M +    +TL+ 
Sbjct: 348 PGRLLDFVDRQAVTFDRVKFVVLDEADRMLDMGFMPAVEKMMNHET--MKSKEERQTLMF 405

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++     I ++  +      I   +  +      +E+    +++ +K   +   +E    
Sbjct: 406 SATFPGQIQELAGQFLN-NYIFVAVGIVGGASSDVEQNIYEVTKFQKRKKLEEILESNDP 464

Query: 498 S------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   +   SL          IHG     ++E  +  FK+G   +LIAT+V 
Sbjct: 465 KGTLVFVETKRNADYLASLLSETKFPTTSIHGDRLQREREEALRDFKSGKMYILIATSVA 524

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH-PPLSKNSYTRLSV 610
             G+D+ + + +I  +        +H++ GR GR          +     S  +   + +
Sbjct: 525 ARGLDIRNVAHVINYDLPKGIDDYVHRI-GRTGRVGNKGRATSFFDMENDSAIAGDLVKI 583

Query: 611 LKN 613
           L  
Sbjct: 584 LTQ 586


>gi|168052555|ref|XP_001778715.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669930|gb|EDQ56508.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 579

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 128/375 (34%), Gaps = 45/375 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q+ AI   L           +     GSGKT      + A +          GG+
Sbjct: 152 KPTPVQKYAIPISLHGRD------LMACAQTGSGKTAAFCFPIIAGIMRNTPPGRPRGGR 205

Query: 324 -----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A+I++P   L+ Q  +  KK+   T I V +  G  P  ++ + +ER       I
Sbjct: 206 KALPLALILSPTRELSCQISDEAKKFAYQTGIRVVVAYGGAPVHNQLREMER----GVDI 261

Query: 379 IIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T     D ++  ++ L +V     DE  R          Q       + M      +
Sbjct: 262 LVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEP--QIRRIVEQMDMPPAGERQ 319

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    +I ++         I   +  +    ++I +    + +  K   +   I 
Sbjct: 320 TMLFSATFPREIQRLASDFLS-NYIFLAVGRVGSSTDLIVQRVEFVQDADKRSMLMDLIH 378

Query: 494 EKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +                  +   +               IHG  S  ++E  + SF+ G
Sbjct: 379 AQSALAPPGQQTLTLVFVETKKGADSLEDWLCRMGFPATTIHGDRSQQEREHALRSFRTG 438

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+D+   + ++  +        +H++ GR GR  +       ++   
Sbjct: 439 VTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRI-GRTGRAGKSGVATAFFNEKD 497

Query: 601 SKNSYTRLSVLKNTE 615
              +     ++  + 
Sbjct: 498 QSLARPLSELMTESN 512


>gi|189425609|ref|YP_001952786.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421868|gb|ACD96266.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 430

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 124/355 (34%), Gaps = 24/355 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------GGQAV 325
           +PT  Q  AI   L           I     G+GKT   +I     +        G + +
Sbjct: 23  TPTPIQAEAIPQALSGRD------LIASAQTGTGKTAAFIIPALERLAKPGPAGIGPRVL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  + + +Y +  ++    I G MP   + + L +       +I+ T   
Sbjct: 77  VLTPTRELAAQVADSVARYGRFLRMRYGSIVGGMPYPDQVRLLRQP----VDLIVATPGR 132

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D ++  ++ L  V E        R+       A   +        +TL+ T+  D  +
Sbjct: 133 LIDHLERGRIDLSRV-ELLVLDEADRMLDMGFTDAVDQIAAATPKKRQTLLFTATMDDPM 191

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN------ 499
           +++  +         +  P    D + +R+ +  + G K   +   +E+   +       
Sbjct: 192 ARLAGRLLKDPSRIAISSPKENHDSIEQRMHLTDNLGHKHKMLHHLLEDPTITQAIIFSA 251

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   +           S A +HG M+   +   + + + G  + L+AT V   G+D+  
Sbjct: 252 TKRDADTLARDLYDRGLSAAALHGDMTQGARTRTLTNLRRGKVRFLVATDVAARGLDING 311

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
            S +I  +        +H++ GR GR       I    P  +            T
Sbjct: 312 ISHVINFDLPRAAEDYVHRI-GRTGRAGATGVAISFVSPADAVYLQRIQRYTGQT 365


>gi|46907098|ref|YP_013487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47092073|ref|ZP_00229866.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
           H7858]
 gi|254992756|ref|ZP_05274946.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-064]
 gi|255521719|ref|ZP_05388956.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-175]
 gi|258611720|ref|ZP_05241706.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
 gi|293596169|ref|ZP_05228867.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
 gi|293596832|ref|ZP_05264606.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
 gi|300764074|ref|ZP_07074069.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
 gi|46880365|gb|AAT03664.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47019513|gb|EAL10253.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
           H7858]
 gi|258605664|gb|EEW18272.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
 gi|293582796|gb|EFF94828.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
 gi|293593090|gb|EFG00851.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
 gi|300515064|gb|EFK42116.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
 gi|332311273|gb|EGJ24368.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
          Length = 519

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 131/348 (37%), Gaps = 35/348 (10%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
             + F   T  QE  I   L           I Q   G+GKT    + M   ++      
Sbjct: 20  NRMGFEEATPIQEKTIPLGLAGKD------LIGQAQTGTGKTAAFGLPMIHKIDQKSNNV 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+AP   LA Q  E + K + +  + V  + G    + + ++L++       I++GT
Sbjct: 74  QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK----NPQIVVGT 129

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L L  V        DE    G    +   L +       LL +AT P 
Sbjct: 130 PGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMPD 189

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    +   ++ +I  K      I+   + ++  ++     +++  +  +   +  
Sbjct: 190 PIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFG 249

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +   +        IHG ++   + SV+  FK G   +L+AT V
Sbjct: 250 RT--------KRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDV 301

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   + +   +      + +H++ GR GR  +    I    P
Sbjct: 302 AARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGMAITFVQP 348


>gi|323485816|ref|ZP_08091151.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
 gi|323400804|gb|EGA93167.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
          Length = 458

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 134/347 (38%), Gaps = 40/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           SP+  QE AI  +L           +     G+GKT    + +   +             
Sbjct: 35  SPSPIQEKAIPHVLAGRDV------LGCAQTGTGKTAAFALPIIQNLMKPSEKKYSKRVI 88

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +++I+ P   LA Q  E  K+Y   T +   +I G +    + + L R       I++ T
Sbjct: 89  RSLILTPTRKLALQIAENFKEYGSRTSVRCAVIFGGVSANPQIEELRR----GIDILVAT 144

Query: 383 HALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP-RTLV 436
                D +         + + ++DE  R      +   +K       +++  P+  +TL+
Sbjct: 145 PGRLNDLVGQGFVDLAYVEIFVLDEADRMLDMGFIHDVKK-------IISLLPVRKQTLL 197

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I  +T+K     P +  + P++   ++I+     + +  K   +   +  + 
Sbjct: 198 FSATMPAEIQALTDK-LLHNPARVEVTPVSSTVDIIDASLYYVDKENKRSLLVYLLNHED 256

Query: 497 ------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  +  +   +R          S A IHG  S   +++ +  FK+G  ++L+AT +
Sbjct: 257 ITSTLVFTRTKHGADRVAKFLVKNRISAAAIHGDKSQGARQTALSHFKSGEIQVLVATDI 316

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
              GID+ + S +I  +  +     +H++ GR GR       I    
Sbjct: 317 AARGIDIEELSCVINFDLPNIPETYIHRI-GRTGRAGLDGRAISFSD 362


>gi|323491944|ref|ZP_08097113.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323313802|gb|EGA66897.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 482

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 143/367 (38%), Gaps = 36/367 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
            P+  QE AI  +L           +     G+GKT    + +   ++ G +       A
Sbjct: 23  KPSPIQEQAIPAVLNGQDV------MAAAQTGTGKTAGFTLPILERLDNGTRVKGNHVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E + KY++  ++   ++ G +    +   L +     + I++ T  
Sbjct: 77  LILTPTRELAAQVQENVFKYSRYQRLTSTVVFGGVKINPQMLKLRK----GSDIVVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     +I++ +L ++++DE  R      ++  +K      +L       + L+ ++
Sbjct: 133 RLLDLYQQNAIKFDQLEVLVLDEADRMLDMGFIRDIRK------ILALLPAKRQNLLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               +I ++  K     P++  + P N     IE+      + KKA  +   I++     
Sbjct: 187 TFSQEIRELA-KGLVNNPVEISVSPENSTAVTIEQSIYPADKRKKAPMLVKLIKDGDWKQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R          + A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFCRTKHGANRLAHFLNKEEITAAPIHGNKSQGARTRALADFKSGDVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++     +     +H++ GR GR  E+   I L     + + +    +++ 
Sbjct: 306 GIDIPQLPQVVNFELPNVSEDYVHRI-GRTGRAGEVGKAISLVEADEASDLFGIERLIQQ 364

Query: 614 TEDGFLI 620
               F +
Sbjct: 365 VLPRFEL 371


>gi|290894075|ref|ZP_06557049.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J2-071]
 gi|290556419|gb|EFD89959.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J2-071]
          Length = 470

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 136/370 (36%), Gaps = 38/370 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  ++ +  + ++  T  Q++ I   L           + +   GSGKT    I +A  
Sbjct: 7   SEEIKRAINELGYTEATPVQKAVIPVALTGED------IVAKSQTGSGKTAAFAIPIAEQ 60

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+I+ P   LA Q         +  ++    I G  P A ++  L +    
Sbjct: 61  VEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKN-- 118

Query: 375 QAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
             HI++GT     D I+           L+L  VDE    G   ++   L++       L
Sbjct: 119 --HIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNL 176

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             +AT       L      D   I        PI  V +  +  ++ ++   V+++E   
Sbjct: 177 FFSATMPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQTDNKEKTLKD--VLITENPD 234

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +  I    + +            + L +        IHG +   D+   MD FK+G  + 
Sbjct: 235 SAIIFCNTKNQ-----------VDELTDLLDVKANKIHGGLRQEDRFRAMDDFKSGKSRF 283

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   GIDV + S++I  +        +H++ GR GR  +    I       +   
Sbjct: 284 LIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRI-GRTGRAGKSGKAISFVKTNENPLL 342

Query: 605 YTRLSVLKNT 614
                +L  T
Sbjct: 343 RDIEEMLDVT 352


>gi|317047085|ref|YP_004114733.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316948702|gb|ADU68177.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 459

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 82/416 (19%), Positives = 152/416 (36%), Gaps = 58/416 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  Q +A+  ILQ    +       Q   GSGKT    I +   ++      QA+++ P 
Sbjct: 27  TPIQAAALPAILQGRDVR------AQAKTGSGKTAAFGIGLLQRIDNSQFHTQALVLCPT 80

Query: 331 GILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    +++  + T+ I +  + G  P + +R +L        HI++GT     D 
Sbjct: 81  RELADQVSNVLRQLARFTRNIKILTLCGGQPMSAQRDSLVHA----PHIVVGTPGRILDH 136

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++   L L  +        D     G +  +   +     A   LL +AT       L+ 
Sbjct: 137 LKRDNLDLNQLQTLVLDEADRMLEMGFRDDMEAIIGFTPAARQTLLFSATWPDTIASLSE 196

Query: 440 LGDIDISKI-TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               D   + TE  A    I+   I ++  +       ++  +   +  +          
Sbjct: 197 RYQRDALAVATETEAELPAIEQRFIEVSASERTNLLSALLSQQQPTSCVVF--------C 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           N +   +   +       S   +HG +   D+E V+  F NG+ ++LIAT V   G+D+ 
Sbjct: 249 NTKRECDDIAAALNDRQISALALHGDLEQRDRERVLIRFANGSIRVLIATDVAARGLDIK 308

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             ++++  +        LH++ GR GR  E    +          ++     L+ + +  
Sbjct: 309 SLALVVNYHLAWDPEVHLHRI-GRTGRAGESGLAVSFVAADEMARAHALEDYLQQSLNWV 367

Query: 619 LI------AEEDL---------------KQRKEGEILG--IKQSGMPKFLIAQPEL 651
                   A + L               K R  G+ILG    ++G     I + +L
Sbjct: 368 AASTLKGSAAKALPATMMTLCIDGGRKAKIR-PGDILGALTGEAGFSADQIGKIDL 422


>gi|50291507|ref|XP_448186.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661162|sp|Q6FNK8|RRP3_CANGA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|49527497|emb|CAG61137.1| unnamed protein product [Candida glabrata]
          Length = 493

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 131/348 (37%), Gaps = 33/348 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
            +N+ F+ PT  Q  AI   L           I     GSGKT    I +   +    Q 
Sbjct: 88  CQNLNFTKPTPIQARAIPPALAG------SDVIGLAQTGSGKTAAFAIPILNKLWEDQQP 141

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A ++AP   LAQQ  E          +    I G M    + + L R    + HIII 
Sbjct: 142 YYACVLAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMR----KPHIIIA 197

Query: 382 THALFQDSIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           T     D ++         L  +++DE  R      L +        +L +  T    T 
Sbjct: 198 TPGRLMDHLENTKGFSLKNLKFLVMDEADRL-----LDMEFGPVLDRILKIIPTKGRTTY 252

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE- 494
           + ++     I K+ ++ +   P+K  +    +  + + +  +V+  G K  ++   + E 
Sbjct: 253 LFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEF 311

Query: 495 -----KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   +  ++  ER + L      S   +HG ++   +   +D FK G   +L+AT 
Sbjct: 312 IGKTVIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATD 371

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   G+D+    I+I  +      + +H++ GR  R       I L  
Sbjct: 372 VAARGLDIPSVDIVINYDIPVDSKSYIHRV-GRTARAGRSGKSISLVS 418


>gi|320355280|ref|YP_004196619.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320123782|gb|ADW19328.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 552

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/360 (22%), Positives = 140/360 (38%), Gaps = 35/360 (9%)

Query: 269 IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQA 324
           + F+ PT  Q++AI  +L+          I Q   G+GKT    + +   +   + G QA
Sbjct: 22  LGFTDPTPIQQAAIPLLLEGRD------LIGQAQTGTGKTAAFGLPLLQRITPRQQGVQA 75

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  E I++Y Q   I V  + G      + ++L +       +I+GT  
Sbjct: 76  LVLAPTRELAIQVAEAIQRYGQQRGITVLAVYGGQAYQQQIRSLRQ----GVEVIVGTPG 131

Query: 385 LFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRT 434
              D +    L L  V        DE    G  + ++L   +       +L +AT   R 
Sbjct: 132 RLLDLMNQGTLDLTTVRTVVLDEADEMLSMGFVEDIELILDRIPAERQTMLFSATISKRV 191

Query: 435 LVLTSLGDIDISK--ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           L L++    D     IT K      I+     +N+ D+V    ++   E   +  I  + 
Sbjct: 192 LGLSARYLRDPETVSITPKQLTGATIEQRYYLVNQQDKVAALTRLFEMETIDSALIFTR- 250

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                       E  N L      +   ++G +S   +  V++ F+NG  K+L+AT V  
Sbjct: 251 ------TRIGTGELANQLTSRGFPA-EALNGDLSQDARIQVLNRFRNGQVKVLVATDVAA 303

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ D S +   +        +H++ GR GR       I L  P             +
Sbjct: 304 RGLDIDDISHVFNFDLPDDPEVYVHRV-GRTGRAGREGIAISLLTPKDRWILRRIEDYAR 362


>gi|259908378|ref|YP_002648734.1| ATP-dependent RNA helicase DbpA [Erwinia pyrifoliae Ep1/96]
 gi|224964000|emb|CAX55505.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283478319|emb|CAY74235.1| ATP-dependent RNA helicase dbpA [Erwinia pyrifoliae DSM 12163]
          Length = 459

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 166/452 (36%), Gaps = 61/452 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q  ++  IL     +       Q   GSGKT    + +   V+A     QA+++ P 
Sbjct: 27  TPVQAESLPAILAGRDVR------AQAKTGSGKTAAFGLGVMHRVDASQYVTQALVLCPT 80

Query: 331 GILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + +++  + T  I +  + G  P   +R +L        HI++GT     D 
Sbjct: 81  RELADQVTKELRRLARFTSNIKILTLCGGQPVGAQRDSLLHA----PHIVVGTPGRILDH 136

Query: 390 IQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVLTS 439
           ++           L+L   D     G ++ +         A   LL +AT       ++ 
Sbjct: 137 LKRETLKLDAISTLVLDEADRMLEMGFREDIDTIISHSPQARQTLLFSATWPQAIAQISQ 196

Query: 440 LGDIDISKITEKPAGRKP-IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               D   I        P I+         +++   + ++      +  +          
Sbjct: 197 SIQRDPLTIETGDVSDLPAIEQTFYEAGAREKLTALIGLLSERQPSSCVVF--------C 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           N +   +      +    S   +HG +   +++ ++  F NG+C++L+AT V   G+D+ 
Sbjct: 249 NTKRECDEIAYALDKAQISAQPLHGDLEQRERDRMLIRFANGSCRVLVATDVAARGLDIK 308

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT------------ 606
             ++++           +H++ GR  R  +    +    P     ++             
Sbjct: 309 ALAMVVNYQLSFDPEVHVHRI-GRTARAGQEGCAVSFVAPDEMIRAHALEDYLQQKLVWC 367

Query: 607 RLSVLKNTEDGFLIAE---------EDLKQRKEGEILG--IKQSGMPKFLIAQPELHDSL 655
            LS LK      L+AE            K R  G+ILG    + G+    + + ++  +L
Sbjct: 368 NLSALKAVAARPLLAEMVTVSLEGGRKAKIR-PGDILGALTGEGGLNGDQVGKIDIASTL 426

Query: 656 --LEIARKDAKHILTQDPDLTSVRGQSIRILL 685
             + I R+ A+ ++ Q      ++G+S R  L
Sbjct: 427 AYVAIRRELARKVMQQL-QQVKIKGKSCRARL 457


>gi|195438679|ref|XP_002067260.1| GK16276 [Drosophila willistoni]
 gi|194163345|gb|EDW78246.1| GK16276 [Drosophila willistoni]
          Length = 950

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/399 (21%), Positives = 147/399 (36%), Gaps = 44/399 (11%)

Query: 253 IPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
            P  ++    Q   +     PT  Q       L        ++ I Q   GSGKTL  ++
Sbjct: 249 PPHIIDEMKRQGFTK-----PTAIQAQGWPIAL----SGRDLVGIAQ--TGSGKTLAYML 297

Query: 313 AMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQA 362
                +          G  A+++AP   LAQQ    ++ Y      +I    I G   + 
Sbjct: 298 PAIVHIGNQPPILRGEGPVALVLAPTRELAQQIQSVVRDYGHLCQPEIRHTCIFGGSSKV 357

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRL 412
            + + LER       +II T     D ++           L+L   D     G   Q R 
Sbjct: 358 PQARDLER----GVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRK 413

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT------EKPAGRKPIKTVIIPIN 466
            + Q      V++ +AT       L      D  +I             + I  +   + 
Sbjct: 414 IIEQIRPDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEME 473

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
           +   ++  LK ++     A     +I    E+  +  VE    +      +   IHG  +
Sbjct: 474 KPQRMMRLLKEIVPTTNNAANNLNKIIIFVETKIK--VEDILQIIRTEGYTATSIHGDKT 531

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             +++SV+  F+NG   +LIAT V   G+DV D   +I  +  +     +H++ GR GR 
Sbjct: 532 QNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRI-GRTGRC 590

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           +++ +    + P  +K +   +SVL+        A  DL
Sbjct: 591 QQLGTAYTFFTPDNAKQARELISVLEEAGQTPSQALLDL 629


>gi|189239856|ref|XP_974261.2| PREDICTED: similar to CG6418 CG6418-PB [Tribolium castaneum]
          Length = 699

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/365 (19%), Positives = 134/365 (36%), Gaps = 37/365 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N + K+ + I++    SPT  Q  A+   LQ          +     GSGKT   L  +
Sbjct: 236 FNFDDKLLKAIIKAEYTSPTPIQAQAVPCALQGRDV------LGIAQTGSGKTAAFLWPL 289

Query: 315 AAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              V          G  A+I+AP   LA Q Y   KK+ +   + V    G   +  +  
Sbjct: 290 LKHVSTQPPVTAGEGPAALILAPTRELAIQIYNEAKKFARVYDLTVVCAYGGGSKWEQSL 349

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           AL+      A I++ T     D ++       ++  +++DE  R          +     
Sbjct: 350 ALKE----GADIVVATPGRIIDHVKGGATNLQRVTFLVLDEADRMFELGFEPQVRSVCNH 405

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                   P  +TL+ ++     I K+ +         +  I     ++V +R+ ++ ++
Sbjct: 406 VR------PDRQTLLFSATFRKRIEKLAKDALNDPVRISQGITGQANEDVTQRVLLMENQ 459

Query: 482 GKKAYWICPQIEEK-------KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             K  W+   + E             +   E+  +  +       ++HG +   ++  V+
Sbjct: 460 QLKRDWLVNNLVELLSAGSVLVFVTKKVDAEQLANDLKVKEFECLLLHGDIEQAERNKVI 519

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +FK   C LL+AT V   G+D+     ++  +         H++ GR GR     +   
Sbjct: 520 TAFKKKECSLLVATDVAARGLDIPHIRTVVNYDIARDIDTHTHRI-GRTGRAGNQGTAYT 578

Query: 595 LYHPP 599
           L  P 
Sbjct: 579 LITPK 583


>gi|270012072|gb|EFA08520.1| hypothetical protein TcasGA2_TC006173 [Tribolium castaneum]
          Length = 702

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/365 (19%), Positives = 134/365 (36%), Gaps = 37/365 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N + K+ + I++    SPT  Q  A+   LQ          +     GSGKT   L  +
Sbjct: 236 FNFDDKLLKAIIKAEYTSPTPIQAQAVPCALQGRDV------LGIAQTGSGKTAAFLWPL 289

Query: 315 AAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              V          G  A+I+AP   LA Q Y   KK+ +   + V    G   +  +  
Sbjct: 290 LKHVSTQPPVTAGEGPAALILAPTRELAIQIYNEAKKFARVYDLTVVCAYGGGSKWEQSL 349

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           AL+      A I++ T     D ++       ++  +++DE  R          +     
Sbjct: 350 ALKE----GADIVVATPGRIIDHVKGGATNLQRVTFLVLDEADRMFELGFEPQVRSVCNH 405

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                   P  +TL+ ++     I K+ +         +  I     ++V +R+ ++ ++
Sbjct: 406 VR------PDRQTLLFSATFRKRIEKLAKDALNDPVRISQGITGQANEDVTQRVLLMENQ 459

Query: 482 GKKAYWICPQIEEK-------KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             K  W+   + E             +   E+  +  +       ++HG +   ++  V+
Sbjct: 460 QLKRDWLVNNLVELLSAGSVLVFVTKKVDAEQLANDLKVKEFECLLLHGDIEQAERNKVI 519

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +FK   C LL+AT V   G+D+     ++  +         H++ GR GR     +   
Sbjct: 520 TAFKKKECSLLVATDVAARGLDIPHIRTVVNYDIARDIDTHTHRI-GRTGRAGNQGTAYT 578

Query: 595 LYHPP 599
           L  P 
Sbjct: 579 LITPK 583


>gi|90577457|ref|ZP_01233268.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90440543|gb|EAS65723.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 654

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 166/423 (39%), Gaps = 34/423 (8%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L N+ F +PT  Q ++I  +L           + +   G+GKT    + +   V+     
Sbjct: 47  LDNMGFVAPTPIQAASIPLLLTG------TDALGKAQTGTGKTAAFSLPVLNKVDLSQHK 100

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++MAP   LA Q    IK   QN   + V  I G      + +AL       AHI++
Sbjct: 101 PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRAL----KNGAHIVV 156

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLT 438
           GT    +D I   +L L   DE H F + +    L          +M   P   + ++ +
Sbjct: 157 GTPGRVKDLISRKQLQL---DEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLFS 213

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     + +I ++   R P +  +   NR    +E+   V+   +K   +   +E +   
Sbjct: 214 ATMPPIVKEIVDRFL-RNPARIDVAGENRTVSKVEQQFWVVKGVEKDEAMSRLLETEDTD 272

Query: 499 ------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R   ER            A +HG +    +E  +D  K G   +L+AT V+ 
Sbjct: 273 ASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVA 332

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   + +   +      + +H++ GR GR       ILL      +   T   V K
Sbjct: 333 RGLDVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRTGKAILLVRTNQIRMLRTIERVTK 391

Query: 613 NTEDGFLIAEEDL----KQRKEGEILGI--KQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           +  +   +   DL    +  + GE L    +Q+ +  F+    +L +S+   A   A  +
Sbjct: 392 SRMEEIQLPLRDLVAASRLNRLGEELAAQKEQTSVEAFVELVEKLQESIDVDAATLAAML 451

Query: 667 LTQ 669
           L +
Sbjct: 452 LQR 454


>gi|325280173|ref|YP_004252715.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324311982|gb|ADY32535.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 417

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 139/381 (36%), Gaps = 43/381 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N++  + Q I        T  QE  I  IL+          I     G+GKT    + +
Sbjct: 6   VNLDENVLQGIEAMNFQEMTPVQEQTIPVILEGKD------IIGCAQTGTGKTAAYTLPL 59

Query: 315 AAAV------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
            + +      +   +AVIM P   LAQQ     + ++    I   ++ G    A   +  
Sbjct: 60  LSRLVAEGNPDNHIRAVIMVPTRELAQQIDMQFEGFSYFLPISTTVVYGGGDGAGWDQQK 119

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKA 418
           + +  G A ++I T       I    + L  V        D     G    +   + Q  
Sbjct: 120 KGLLMG-ADVVIATPGRLLSHIANSGIDLSQVSYFILDEADRMLDMGFFDDIMQIVKQMP 178

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
           T    +L +AT  P+   L      D ++I              I I++ +E I +   +
Sbjct: 179 TKRQTILFSATLPPKIRQLAKQILKDPAEIN-------------IAISKPNEAIIQSAYI 225

Query: 479 LSEGKKAYWIC------PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
             E +K   I        + +    S+ +  V+      +    ++A +H  +    +E+
Sbjct: 226 CYETQKMAIIQELFSKPNRKKTIIFSSSKQKVKDLAYSLKRMKLNVAAMHSDLEQEQREA 285

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           VM  FKNG   +L+AT ++  GID+ D  ++I  +  H     +H++ GR  R       
Sbjct: 286 VMLDFKNGKTDILVATDIVARGIDIDDIGLVINYDVPHDPEDYIHRI-GRTARANADGVA 344

Query: 593 ILLYHPPLSKNSYTRLSVLKN 613
           I     P     +     ++ 
Sbjct: 345 ITFVCEPEQGKFHKIEEFIEK 365


>gi|312373567|gb|EFR21282.1| hypothetical protein AND_17289 [Anopheles darlingi]
          Length = 744

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/364 (21%), Positives = 132/364 (36%), Gaps = 35/364 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q   +   L        M+ I Q   GSGKTL  ++     ++         G  
Sbjct: 140 KPTAIQAQGMPIAL----SGRDMVGIAQ--TGSGKTLAYVVPSLVHIQHQESIRRGDGPI 193

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LAQQ  +    +          + G  P+  + + LER     A I+I T 
Sbjct: 194 ALILAPTRELAQQIQQVATDFGSRVSANNTCVFGGAPKGPQIRDLER----GAEIVIATP 249

Query: 384 ALFQDSIQYY--------KLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 250 GRLIDFLERGITNLKRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDRQVLMWSATWPKE 309

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L    L D     I             I+ +    E  ++L  +L+E        P 
Sbjct: 310 VRQLAEEFLADYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLLTEISAE----PD 365

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +       +  V+    +          IHG  S  +++ V+ +F+NG   +L+AT V 
Sbjct: 366 TKTIIFVETKRRVDDITRIVNRNGWRAVAIHGDKSQQERDYVLSAFRNGRQGILVATDVA 425

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D   +I  +        +H++ GR GR     +   L+    +  +   ++VL
Sbjct: 426 ARGLDVEDVKFVINYDYPSNSEDYVHRI-GRTGRSNNTGTAYTLFTHSNANKANDLINVL 484

Query: 612 KNTE 615
           +   
Sbjct: 485 REAN 488


>gi|262042929|ref|ZP_06016074.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039769|gb|EEW40895.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 457

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 169/444 (38%), Gaps = 47/444 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q +A+  IL     +      +Q   GSGKT    + +   ++      Q++++ P 
Sbjct: 27  TPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQHIDPARFETQSLVLCPT 80

Query: 331 GILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    +++  +    I + ++ G  P   +R +L+       HII+ T     D 
Sbjct: 81  RELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQHA----PHIIVATPGRLLDH 136

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +Q   + L  + +        R+     + A   ++  A    +TL+ ++     I+ I+
Sbjct: 137 LQKGTVSLDAL-QTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSATWPAAIAAIS 195

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSV 503
            +   R P    I  ++ +   IE+    +S   K   +   + + +        N +  
Sbjct: 196 GR-VQRNPQTIEIDTVDALP-AIEQQFFEVSRHGKIALLQRLLSQHQPASCVVFCNTKRD 253

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +           S   +HG +   D++  +  F NG+ ++L+AT V   G+D+   +++
Sbjct: 254 CQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARGLDIKSLALV 313

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED------G 617
           +           +H++ GR  R  E    I    P  ++ +     +L+ + +      G
Sbjct: 314 VNFELAWDPEVHVHRI-GRTARAGEQGLAISFCAPEEAQRATILADMLQLSLNWLPAPTG 372

Query: 618 FLIAEEDLKQ------------RKEGEILGIKQS--GMPKFLIAQPELHDS--LLEIARK 661
             IA    +              + G++LG      G     I +  +H +   + I + 
Sbjct: 373 NTIAPLTAEMATLCIDGGKKAKMRPGDVLGALTGDLGFAGADIGKITVHPAHVYVAIRQN 432

Query: 662 DAKHILTQDPDLTSVRGQSIRILL 685
            A+    Q  +   ++G+S R+ L
Sbjct: 433 MAQKAYKQLQN-GKIKGKSCRVRL 455


>gi|251796178|ref|YP_003010909.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247543804|gb|ACT00823.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 578

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/336 (19%), Positives = 130/336 (38%), Gaps = 22/336 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           SPT  Q+ AI  +L           I Q   G+GKT+   + +   ++      QA+I+ 
Sbjct: 25  SPTPVQKKAIPVLLSGQDV------IAQAQTGTGKTIAFTLPILQRIDIDKEQVQALILT 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +KK        V    G      + + L    +   HI++ T     D
Sbjct: 79  PTRELAIQITSELKKLAAAVGAKVLAAYGGQDVDAQIRKL----NNSPHIVVATPGRLID 134

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++   + L  +         Q L +       +++  T     +T++ ++     I ++
Sbjct: 135 HMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQT-PRARQTMLFSATMPDQIKRL 193

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRS 502
            E    + P+   I   N   + I++L +  ++  +   +   IE ++          + 
Sbjct: 194 AENYM-KTPVDIKIQSANVTLDNIKQLVIETTDRGRQKALISMIETQRPYLAVIFCRTKV 252

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             ++ N   +        +HG ++   +E VM  F++   ++L+AT V   G+DV   + 
Sbjct: 253 RAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQILVATDVAARGLDVEGVTH 312

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +   +        +H++ GR GR  +  + I +  P
Sbjct: 313 VFNFDVPTDSEIYIHRI-GRTGRAGQRGTAITIASP 347


>gi|163868127|ref|YP_001609331.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
 gi|161017778|emb|CAK01336.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
          Length = 467

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/366 (20%), Positives = 140/366 (38%), Gaps = 47/366 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q   I  +LQ      R   +     G+GKT   ++ M   +E G       + +I
Sbjct: 29  PTPIQSETIPHVLQ------RKDVLGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTLI 82

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   +A Q  E   KY  N ++ V ++ G +   H+ + LER     A ++I T    
Sbjct: 83  LEPTREIAAQVEENFDKYGINHRLNVALLIGGVSFEHQDRKLER----GADVLIATPGRL 138

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRT-- 434
            D  +  KL+L+ V     DE  R      +   ++           L  +AT  P    
Sbjct: 139 LDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLFFSATMAPEITK 198

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIP-----INRIDEVIERLKVVLSEGKKAYWIC 489
           L    L      ++T+  +    +   ++       ++   + E ++   S+ + A   C
Sbjct: 199 LTKQFLHSPVSVEVTKASSTATTVTQRLVKSGNKSWDKRAVLRELIQNEGSKLQNAIIFC 258

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         R + E F SL +H   ++  +HG M    + + +  FKN    LL+A+ 
Sbjct: 259 NR--------KRDISELFRSLIKH-NFNVGALHGDMDQYSRMNTLADFKNNKLTLLVASD 309

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+   S +   +        +H++ GR GR   +     +     +K     ++
Sbjct: 310 VAARGLDIPAVSHVFNYDVPTHAEDYIHRI-GRTGRANRLGKAFTIV----TKADQKYIN 364

Query: 610 VLKNTE 615
            ++   
Sbjct: 365 AIEEMS 370


>gi|160915730|ref|ZP_02077938.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991]
 gi|158432206|gb|EDP10495.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991]
          Length = 572

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/360 (20%), Positives = 142/360 (39%), Gaps = 39/360 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           T+ Q  AI  I++          + + + G+GKT    I     V   +    A+I+ P 
Sbjct: 26  TEIQAKAIPYIMEGKDV------LGRSNTGTGKTAAFGIPAIEMVQPQDKYANALIICPT 79

Query: 331 GILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             L  Q    ++K+++    + +  I G  P   + + L+R       I++GT     D 
Sbjct: 80  RELVTQVAMELRKFSKYKEGVKIVPIYGGQPIERQIQLLKR----GCGIVVGTPGRIMDH 135

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           ++   L L  +        DE    G ++ ++         + LM +    +T++ ++  
Sbjct: 136 LRRRTLKLSDIRMVILDEADEMLNMGFKEDIEEI-------LSLMPSERSYQTILFSATW 188

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--- 498
             +I +I  K     P+   I    R  + +E+L   +  GKKA  +   +         
Sbjct: 189 PSEIMRIA-KEFQNDPVTVEIKSAQRTIDTVEQLYYEVPRGKKANALRVLLNHYDPELCM 247

Query: 499 ---NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N + +V+               +HG M    +  VM+ F++G+  +LIAT V   GI
Sbjct: 248 IFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQFRSGSMPILIATDVAARGI 307

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV D  ++I  +        +H++ GR GR  +    I L      +      ++++ T+
Sbjct: 308 DVDDVDLVINFDIPQDNEYYIHRI-GRTGRAGKKGLAITLISG--GRQRSELKNIMRYTK 364


>gi|326934003|ref|XP_003213086.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Meleagris
           gallopavo]
          Length = 944

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/457 (17%), Positives = 153/457 (33%), Gaps = 60/457 (13%)

Query: 213 RKAKDFEWTSPARERLAYDE------LLAGQIALLLMRKQFKKEIGIP---------INV 257
                 E   P  E+  YDE      L   Q+  L  +   +     P            
Sbjct: 201 PPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGF 260

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           + ++  +I ++    PT  Q   +   +        M+ I     GSGKT   +  M   
Sbjct: 261 DEQLMHQIRKSEYTQPTPIQCQGVPVAM----SGRDMIGI--AKTGSGKTAAFIWPMLIH 314

Query: 318 VEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +          G  AVI+ P   L QQ +   K++ +   +    + G      + KAL+
Sbjct: 315 IMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQ 374

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP 421
                 A I++ T     D ++           L+    D     G + +++        
Sbjct: 375 E----GAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVR- 429

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                   P  +TL+ ++     I K+  +     PI+ V   I   +E + ++  +   
Sbjct: 430 --------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVTQIVEIFPS 480

Query: 482 GK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           G  K  W+  ++ E             ++  E   +  +    ++ ++HG M   ++  V
Sbjct: 481 GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV 540

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  FK     +L+AT V   G+D+     +I  +         H++ GR GR  E     
Sbjct: 541 ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGRAGEKGVAY 599

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
            L  P  S  +   +  L+           DL  +  
Sbjct: 600 TLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNP 636


>gi|260558407|ref|ZP_05830603.1| helicase [Enterococcus faecium C68]
 gi|261207113|ref|ZP_05921802.1| helicase [Enterococcus faecium TC 6]
 gi|289567232|ref|ZP_06447617.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
 gi|293556891|ref|ZP_06675452.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
 gi|293567807|ref|ZP_06679148.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
 gi|294615128|ref|ZP_06695014.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
 gi|294617803|ref|ZP_06697416.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
 gi|260075581|gb|EEW63887.1| helicase [Enterococcus faecium C68]
 gi|260078741|gb|EEW66443.1| helicase [Enterococcus faecium TC 6]
 gi|289160980|gb|EFD08895.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
 gi|291589392|gb|EFF21199.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
 gi|291592070|gb|EFF23693.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
 gi|291595943|gb|EFF27223.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
 gi|291600975|gb|EFF31266.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
          Length = 503

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 35/346 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  Q   I   L           I Q   G+GKT    + M   ++      Q +
Sbjct: 20  GFEEATPIQSETIPLALAGKDV------IGQAQTGTGKTAAFGLPMLEKIDPDRHELQGL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E + +  ++ ++ V+ + G      + + L+     + HI++GT   
Sbjct: 74  VIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLKD----RPHIVVGTPGR 129

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--R 433
             D I  + L L  V        DE    G  + +   ++Q       LL +AT  P  +
Sbjct: 130 MLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQRQTLLFSATMPPAIK 189

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + +  + +    KI  K      I    +     ++     ++   +  +   +  +  
Sbjct: 190 NIGVKFMKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTPELTIVFGRT- 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+      E        IHG +S   + SV+ SFK+G   +L+AT V   
Sbjct: 249 -------KRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAAR 301

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKGGMSVTFVTPN 346


>gi|254778953|ref|YP_003057058.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           pylori B38]
 gi|254000864|emb|CAX28796.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           pylori B38]
          Length = 492

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ S + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|226223484|ref|YP_002757591.1| ATP-dependent RNA helicase [Listeria monocytogenes Clip81459]
 gi|225875946|emb|CAS04650.1| Putative ATP-dependent RNA helicase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328467139|gb|EGF38229.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 1816]
 gi|328475471|gb|EGF46234.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 220]
          Length = 517

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 131/348 (37%), Gaps = 35/348 (10%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
             + F   T  QE  I   L           I Q   G+GKT    + M   ++      
Sbjct: 18  NRMGFEEATPIQEKTIPLGLAGKD------LIGQAQTGTGKTAAFGLPMIHKIDQKSNNV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+AP   LA Q  E + K + +  + V  + G    + + ++L++       I++GT
Sbjct: 72  QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK----NPQIVVGT 127

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L L  V        DE    G    +   L +       LL +AT P 
Sbjct: 128 PGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    +   ++ +I  K      I+   + ++  ++     +++  +  +   +  
Sbjct: 188 PIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +   +        IHG ++   + SV+  FK G   +L+AT V
Sbjct: 248 RT--------KRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   + +   +      + +H++ GR GR  +    I    P
Sbjct: 300 AARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGMAITFVQP 346


>gi|153832249|ref|ZP_01984916.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
 gi|148871560|gb|EDL70415.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
          Length = 499

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/343 (18%), Positives = 130/343 (37%), Gaps = 36/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  +L+          +     G+GKT    + +   +  G +       A
Sbjct: 23  TPSPIQAQAIPAVLEGKDV------MAAAQTGTGKTAGFTLPILERLSNGPRVRSNQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +  Y+++  +   ++ G +    +   L +     A +++ T  
Sbjct: 77  LVLTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRLRK----GADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLLDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRK-------ILDLLPKQRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +E+        KKA  +   I++     
Sbjct: 186 ATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPADVKKKAPMLVKLIKDGDWKQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R          + A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           GID+     ++           +H++ GR GR  E+   I L 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRI-GRTGRAGEVGKAISLV 347


>gi|71896321|ref|NP_001026097.1| ATP-dependent RNA helicase DDX42 [Gallus gallus]
 gi|82194905|sp|Q5F485|DDX42_CHICK RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|60098437|emb|CAH65049.1| hypothetical protein RCJMB04_2e15 [Gallus gallus]
          Length = 944

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/457 (17%), Positives = 153/457 (33%), Gaps = 60/457 (13%)

Query: 213 RKAKDFEWTSPARERLAYDE------LLAGQIALLLMRKQFKKEIGIP---------INV 257
                 E   P  E+  YDE      L   Q+  L  +   +     P            
Sbjct: 201 PPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFARFGF 260

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           + ++  +I ++    PT  Q   +   +        M+ I     GSGKT   +  M   
Sbjct: 261 DEQLMHQIRKSEYTQPTPIQCQGVPVAM----SGRDMIGI--AKTGSGKTAAFIWPMLIH 314

Query: 318 VEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +          G  AVI+ P   L QQ +   K++ +   +    + G      + KAL+
Sbjct: 315 IMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQ 374

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP 421
                 A I++ T     D ++           L+    D     G + +++        
Sbjct: 375 E----GAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVR- 429

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                   P  +TL+ ++     I K+  +     PI+ V   I   +E + ++  +   
Sbjct: 430 --------PDRQTLLFSATFRKKIEKLA-RDILIDPIRVVQGDIGEANEDVTQIVEIFPS 480

Query: 482 GK-KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           G  K  W+  ++ E             ++  E   +  +    ++ ++HG M   ++  V
Sbjct: 481 GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV 540

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  FK     +L+AT V   G+D+     +I  +         H++ GR GR  E     
Sbjct: 541 ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI-GRTGRAGEKGVAY 599

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
            L  P  S  +   +  L+           DL  +  
Sbjct: 600 TLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNP 636


>gi|16799933|ref|NP_470201.1| hypothetical protein lin0859 [Listeria innocua Clip11262]
 gi|217965039|ref|YP_002350717.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Listeria monocytogenes HCC23]
 gi|290892943|ref|ZP_06555933.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
 gi|16413310|emb|CAC96091.1| lin0859 [Listeria innocua Clip11262]
 gi|217334309|gb|ACK40103.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Listeria monocytogenes HCC23]
 gi|290557519|gb|EFD91043.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
          Length = 516

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 131/348 (37%), Gaps = 35/348 (10%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
             + F   T  QE  I   L           I Q   G+GKT    + M   ++      
Sbjct: 18  NRMGFEEATPIQEKTIPLGLAGKD------LIGQAQTGTGKTAAFGLPMIHKIDQKSNNV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+AP   LA Q  E + K + +  + V  + G    + + ++L++       I++GT
Sbjct: 72  QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK----NPQIVVGT 127

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L L  V        DE    G    +   L +       LL +AT P 
Sbjct: 128 PGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    +   ++ +I  K      I+   + ++  ++     +++  +  +   +  
Sbjct: 188 PIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +   +        IHG ++   + SV+  FK G   +L+AT V
Sbjct: 248 RT--------KRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   + +   +      + +H++ GR GR  +    I    P
Sbjct: 300 AARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGMAITFVQP 346


>gi|319956997|ref|YP_004168260.1| dead/deah box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
 gi|319419401|gb|ADV46511.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
          Length = 462

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 146/383 (38%), Gaps = 42/383 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            P+  Q+ AI  IL+          + Q   G+GKT    + +   +  G   +A+++ P
Sbjct: 23  EPSPIQKEAIPIILEGRD------LVGQAHTGTGKTAAFGLPILDRIARGEIERALVITP 76

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +    +   I    + G +    +   + R       I++ T    +D 
Sbjct: 77  TRELATQVSDELYHLGRFAGIRTLAVYGGVGYGRQIALIHR----GVQIVVATPGRLKDL 132

Query: 390 IQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            Q  K        ++L   DE    G    ++   +    +          +TL+ ++  
Sbjct: 133 YQKGKIDVFNPEVVVLDEADEMLDMGFLDDVREIFEYIPQN---------RQTLLFSATM 183

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---- 497
              I ++ +         +V+      +  IE+   V++E ++   I   +E +      
Sbjct: 184 PDPIKELADTLLYEPEFISVVGEETTKNVDIEQYYYVINENQRDEAIVRLLETENYDKAL 243

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +  V+R     +    + A +HG +  +++++++ SF+ G  ++LIAT V   G+
Sbjct: 244 IFCRMKREVDRLAEELKALGFNAAGLHGDIDQMERDAIVKSFRRGETRILIATDVAARGL 303

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+ + + +   +      + +H++ GR GR  +    I L     ++       + K   
Sbjct: 304 DIKNVTHVFNYHIPFDPQSYVHRI-GRTGRAGKRGRAITLAS---TEEFRELQRIRKEVG 359

Query: 616 DGFLIAEEDLKQRKEGEILGIKQ 638
               +A   L+    G I G +Q
Sbjct: 360 ADMKLAT--LQVAGSGSI-GDEQ 379


>gi|297738935|emb|CBI28180.3| unnamed protein product [Vitis vinifera]
          Length = 916

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/373 (16%), Positives = 137/373 (36%), Gaps = 43/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
            PT  Q  AI      M+ ++ M        GSGKT      +   +             
Sbjct: 443 KPTPIQRHAIPIA---MAGRDLM---ACAQTGSGKTAAFCFPIICGILRNQLSRGGARLA 496

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              A+I++P   L+ Q +E  KK++  T + V +  G  P + + + LER       I++
Sbjct: 497 CPTALILSPTRELSCQIHEEAKKFSYKTGLKVVVAYGGAPISQQFRNLER----GVDILV 552

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D I+  ++ L ++     DE  R          Q       + M      +T+
Sbjct: 553 ATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEP--QIRKIVEQMDMPPPGARQTM 610

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I ++         I   +  +    ++I +    + +  K Y +   ++ +
Sbjct: 611 LFSATFPNEIQRLAADFLS-NYIFLSVGRVGSSTDLIVQRVEFVEDTDKRYHLMDLLQSQ 669

Query: 496 KES-------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +               +  V+           +   IHG    +++E  + SFK+G  
Sbjct: 670 MTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERALKSFKSGAT 729

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +++AT V   G+D+   + +I  +        +H++ GR GR  +       ++     
Sbjct: 730 PIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRI-GRTGRAGKSGLATAFFNDGNLS 788

Query: 603 NSYTRLSVLKNTE 615
            + + + +++ + 
Sbjct: 789 LAKSLVELMQESN 801


>gi|91206537|sp|Q4X195|DBP2_ASPFU RecName: Full=ATP-dependent RNA helicase dbp2
          Length = 547

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/434 (18%), Positives = 151/434 (34%), Gaps = 55/434 (12%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-- 269
           P+  K F    P     +  E+           +   +   +P  VE        + +  
Sbjct: 79  PKFEKSFYKEHPDVAARSEREVEEF----RKKHEMTVQGRNVPRPVENFDEAGFPQYVLS 134

Query: 270 -----PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
                 F  PT  Q       L           +   + GSGKTL   +     + A   
Sbjct: 135 EVKAQGFERPTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPL 188

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +I+AP   LA Q    I K+ ++++I    + G +P+  + + L R     
Sbjct: 189 LAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSR----G 244

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLL 425
             + I T     D ++  +        L+L   D     G + +++    Q        +
Sbjct: 245 VEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCM 304

Query: 426 MTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLKVVL 479
            +AT     R L    L D     I           T    V+    + D++I+ L+ ++
Sbjct: 305 WSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIM 364

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
                   I            R   E    L +    +++I HG     +++ V++ FK 
Sbjct: 365 ENRSNKCLIFT-------GTKRIADEITRFLRQDGWPALSI-HGDKQQQERDWVLNEFKT 416

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +++AT V   GIDV D + ++  +  +     +H++ GR GR     + I  +   
Sbjct: 417 GKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRI-GRTGRAGAKGTAITFFTTE 475

Query: 600 LSKNSYTRLSVLKN 613
            SK +   +++L  
Sbjct: 476 NSKQARDLVTILTE 489


>gi|144901078|emb|CAM77942.1| ATP-dependent RNA helicase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 570

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/350 (21%), Positives = 134/350 (38%), Gaps = 39/350 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q+ AI  +L           +     G+GKT    + M   + AG       +++
Sbjct: 30  TPTPIQQQAIPVVLMGRDV------LGCAQTGTGKTASFTLPMIEILAAGRAKARMPRSL 83

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+AP   LA Q  E   KY +  ++   +I G    + +   L+R       ++I T   
Sbjct: 84  ILAPTRELAAQVAENFDKYGKYHKLNKALIIGGESMSDQIAILDR----GVDVLIATPGR 139

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIPR 433
             D     +++L  V     DE  R      +   Q+           L  +AT  P  R
Sbjct: 140 LLDMFDRGRILLNDVKVLVIDEADRMLDMGFIPDVQRIVSMLPKMRQTLFFSATLGPEIR 199

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK-AYWICPQI 492
            L    L +     ++ + +    ++  +  ++ ID+      ++  E  K A+  C + 
Sbjct: 200 KLADEFLMNPKEISVSAQSSTAVTVEQFLAVVDHIDKRETLRHIIRIENLKNAFIFCNR- 258

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R V   F SL +H    +  +HG MS   +   +  FK+G  +LL+ + V+ 
Sbjct: 259 -------KRDVDILFKSLKKHGFD-VVQMHGDMSQPARLESLAKFKSGEARLLVCSDVVA 310

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            GID+   S +   +        +H++ GR GR  E      +  P   +
Sbjct: 311 RGIDIKAVSHVFNFDVPIHAEDYVHRI-GRTGRAGETGKAFTIASPEDGR 359


>gi|88813706|ref|ZP_01128932.1| DEAD/DEAH box helicase-like protein [Nitrococcus mobilis Nb-231]
 gi|88789025|gb|EAR20166.1| DEAD/DEAH box helicase-like protein [Nitrococcus mobilis Nb-231]
          Length = 586

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/365 (19%), Positives = 134/365 (36%), Gaps = 36/365 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  IL           + Q   G+GKT    + + + ++     
Sbjct: 24  LHDVGYEVPSPIQAHTIPHILAGRDV------LGQAQTGTGKTAAFALPLLSRLDLSQAV 77

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++ P   LA Q  E  ++Y    T   V  + G      + + L        H+++
Sbjct: 78  PQVLVLTPTRELAIQVAEAFQRYAARLTGFHVLPLYGGQDYRGQFQRLAH----GTHVVV 133

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G    ++    Q  +   + L +AT 
Sbjct: 134 GTPGRVMDHMRRGTLKLDALACLVLDEADEMLRMGFIDDVEWILDQIPSTRQIALFSATL 193

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P+ R +    L +     I  + A  + I+     +N   ++    +++ +E      +
Sbjct: 194 PPVIRRIAKKHLHNPQEISIKVRTATAETIRQRYWLVNGTHKLDALTRILEAEPFDGMIV 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +          + VE    L     ++ A+  G +S   +E  +   K G   +L+AT
Sbjct: 254 FVRTRT-------ATVELAEKLEARGYAAAAL-SGDISQKLREHTVQRLKGGKLDILVAT 305

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S +I  +  +   A +H++ GR GR       IL   P   +      
Sbjct: 306 DVAARGLDVERISHVINYDIPNDTEAYVHRI-GRTGRAGRAGDAILFVTPREQRMLRMIE 364

Query: 609 SVLKN 613
              + 
Sbjct: 365 KATRQ 369


>gi|331268314|ref|YP_004394806.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
 gi|329124864|gb|AEB74809.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
          Length = 528

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 77/357 (21%), Positives = 131/357 (36%), Gaps = 36/357 (10%)

Query: 257 VEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
                 ++ + ++ F  P+  QE AI  IL           I Q   G+GKT    I   
Sbjct: 10  PISDEIKRAIADMGFEAPSPIQEKAIPFILSGKD------IIGQAQTGTGKTAAFGIPAL 63

Query: 316 AAVE---AGGQAVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
             ++      Q +++ P   LA Q   E  K       I V  + G  P   + KAL+R 
Sbjct: 64  DTIDLNNKSLQIMVLCPTRELAIQATQEVHKLGKYKKDISVLAVYGGQPIDRQIKALKR- 122

Query: 372 AHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAP 421
                 IIIGT     D I+   L        +L   DE    G +  +   + +     
Sbjct: 123 ---GVQIIIGTPGRVIDHIRRKTLKTDNIKMIVLDEADEMLDMGFRDDIETIIQEIPQNR 179

Query: 422 HVLLMTATPIPRTLVLT--SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
             +L +AT     + L+     + +  K+  K      I+   + +   +++    +++ 
Sbjct: 180 QTILFSATMAKAIIELSKKYQNNAEFIKVVHKQLTVPNIEQRYLEVKENNKLEVLSRLID 239

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
               K   I         +  + V E  + L      +  + HG M    ++ VM+ F+N
Sbjct: 240 MRNPKLSVIF-------CNTKKRVDEVVSQLQARGYFAEGL-HGDMKQPQRDRVMNKFRN 291

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           GT ++L+AT V   GIDV D   +   +        +H++ GR GR           
Sbjct: 292 GTIEILVATDVAARGIDVDDVEAVFNYDLPQDEEYYVHRI-GRTGRAGRSGIAFTFV 347


>gi|313624489|gb|EFR94491.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
           J1-023]
          Length = 516

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 127/350 (36%), Gaps = 39/350 (11%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
             + F   T  QE  I   L           I Q   G+GKT    + M   ++      
Sbjct: 18  NRMGFEEATPIQEKTIPLGLAGKD------LIGQAQTGTGKTAAFGLPMIHKIDQKNNNV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+AP   LA Q  E + K + +  + V  + G    + + ++L++       I++GT
Sbjct: 72  QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK----NPQIVVGT 127

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I    L L  V        DE    G    +           +L       +T
Sbjct: 128 PGRILDHINRRTLKLDNVETLVLDEADEMLNMGFIDDI---------ETILKEVPAERQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I +I E+     P    I        +IE+  V + E +K   +   ++ 
Sbjct: 179 LLFSATMPDPIRRIGERFM-HSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +       F     R + L             IHG ++   + SV+  FK G   +L+AT
Sbjct: 238 QAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   + +   +      + +H++ GR GR  +    I    P
Sbjct: 298 DVAARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGMAITFVQP 346


>gi|302783318|ref|XP_002973432.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii]
 gi|300159185|gb|EFJ25806.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii]
          Length = 506

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/380 (17%), Positives = 129/380 (33%), Gaps = 53/380 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ AI   L           +     GSGKT      + A +             
Sbjct: 74  KPTPVQKHAIPISLHGRD------LMACAQTGSGKTAAFCFPIIAGILWNFPPGSRHARG 127

Query: 324 -------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                  A+I++P   L+ Q ++  KK+   T + V +I G      + K LER      
Sbjct: 128 SRKAFPLALILSPTRELSSQIHDEAKKFAYQTGVKVVVIYGGTSVQSQLKELER----GV 183

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK------LTQKATAPH 422
            I++ T     D +Q  +        L L   D     G + +++          A    
Sbjct: 184 DILVATPGRLDDLMQRGRISLSLVRYLALDEADRMLDMGFEPQIRKIVENTDMPPAGQRQ 243

Query: 423 VLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKT---VIIPINRIDEVIERLKV 477
            +L +AT     + L    L +     +    +    I      +  +++   +++ +  
Sbjct: 244 TMLFSATFPREIQRLAADFLYNYIFLAVGRVGSSTDLIVQRVEYVHDVDKRSMLMDMIHA 303

Query: 478 VLSEG--KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
               G   +   I   +E       +   +           S   IHG  + +++E  + 
Sbjct: 304 QKPNGLNGQLPLILVFVET------KRGADSLEDWLIQMGISATTIHGDRTQVEREHALR 357

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SF+ G   +L+AT V   G+D+   + +I  +        +H++ GR GR  +       
Sbjct: 358 SFRTGVTPILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRI-GRTGRAGKSGFATAF 416

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           +    +  +   + +++   
Sbjct: 417 FTDKDTSLARPLVDLMQEAN 436


>gi|294794656|ref|ZP_06759792.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
 gi|294454986|gb|EFG23359.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
          Length = 515

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 86/417 (20%), Positives = 153/417 (36%), Gaps = 50/417 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT  Q+ AI   +           I Q   G+GKT    + +   V   E   Q VI++
Sbjct: 25  EPTPIQQEAIPVAMSGKD------MIGQAQTGTGKTAAFGLPVLERVDGNERHVQVVILS 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + K  Q T I    I G      + +AL++       II+ T     D
Sbjct: 79  PTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKK----NPQIIVATPGRLMD 134

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            +            ++L   DE    G    +     A              +TL+ ++ 
Sbjct: 135 HMDRGSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPED---------HQTLLFSAT 185

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---E 497
               I ++ E     +P    + P     ++IE+  + + + +K   +C   + +     
Sbjct: 186 MPKAIQQLAETYLT-EPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDIQTPELA 244

Query: 498 SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F     R + + E           IHG +S   ++SV+  F+ GT  +L+AT V   G
Sbjct: 245 IIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+   S +   +      +  H++ GR GR  +         P   ++ +    + K  
Sbjct: 305 LDISGVSHVYNYDMPQDPESYTHRV-GRTGRAGKAGQAFTFVIPREMEHLHAIERLTKR- 362

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA--RKDAKHILTQ 669
                IA    +    GE+L  +Q      + +  E+ D+L  +A  +  A+ +L  
Sbjct: 363 ----KIARR--RAPSLGEVLEGQQ---RLAIESLVEMTDNLEALAPFKSSAEELLND 410


>gi|282849975|ref|ZP_06259358.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
 gi|294792894|ref|ZP_06758041.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
 gi|282580412|gb|EFB85812.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
 gi|294456793|gb|EFG25156.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
          Length = 515

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 86/417 (20%), Positives = 153/417 (36%), Gaps = 50/417 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT  Q+ AI   +           I Q   G+GKT    + +   V   E   Q VI++
Sbjct: 25  EPTPIQQEAIPVAMSGKD------MIGQAQTGTGKTAAFGLPVLERVDGNERHVQVVILS 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + K  Q T I    I G      + +AL++       II+ T     D
Sbjct: 79  PTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKK----NPQIIVATPGRLMD 134

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            +            ++L   DE    G    +     A              +TL+ ++ 
Sbjct: 135 HMDRGSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPED---------HQTLLFSAT 185

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---E 497
               I ++ E     +P    + P     ++IE+  + + + +K   +C   + +     
Sbjct: 186 MPKAIQQLAETYLT-EPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDIQTPELA 244

Query: 498 SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F     R + + E           IHG +S   ++SV+  F+ GT  +L+AT V   G
Sbjct: 245 IIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+   S +   +      +  H++ GR GR  +         P   ++ +    + K  
Sbjct: 305 LDISGVSHVYNYDMPQDPESYTHRV-GRTGRAGKAGQAFTFVIPREMEHLHAIERLTKR- 362

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA--RKDAKHILTQ 669
                IA    +    GE+L  +Q      + +  E+ D+L  +A  +  A+ +L  
Sbjct: 363 ----KIARR--RAPSLGEVLEGQQ---RLAIESLVEMTDNLEALAPFKSSAEELLND 410


>gi|331009376|gb|EGH89432.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 202

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 85/203 (41%), Gaps = 12/203 (5%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
            ++  +GVG+  +  L+++            D+LF+ P  + DR     I  +   +   
Sbjct: 8   SVTALKGVGEAMAEKLARV------GLETLQDVLFHLPLRYQDRTRVVPIGALRPGQDAV 61

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKK 131
           I G +   +   + KRR   + L DGTG ++L F++      K     G  +   G+ + 
Sbjct: 62  IEG-VVSGADVVMGKRRSLLVRLCDGTGVVSLRFYHFSNAQ-KESMKRGTHLRCFGEARP 119

Query: 132 LKNRIIMVHPHY--IFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL--PVLPE 187
             + + + HP Y  I  +        +  +Y    GL+    +++  ++L+ L    LP+
Sbjct: 120 GASGLEIYHPEYRAITGDEPAPVEQTLTPIYPTTEGLTQQRLRQLCQQSLAMLGPKSLPD 179

Query: 188 WIEKDLLQKKSFPSIAEAFNIIH 210
           W+  +L +      + +A   +H
Sbjct: 180 WLPDELARDYQLAPLDDAIRYLH 202


>gi|315179704|gb|ADT86618.1| hypothetical protein vfu_A01441 [Vibrio furnissii NCTC 11218]
          Length = 536

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 141/371 (38%), Gaps = 41/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  +LQ          +     G+GKT    + +   +  G +       A
Sbjct: 23  TPSPIQAQAIPAVLQGKDV------MAAAQTGTGKTAGFTLPILERLTGGPRVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +  Y+++  +   ++ G +    +   L +     A +++ T  
Sbjct: 77  LILTPTRELAAQVQECVFTYSRHLPLSSAVVFGGVKINPQMLRLRK----GADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRK-------ILELLPKNRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N   + +E+        KKA  +   I++     
Sbjct: 186 ATFSDEIRALAKGLVNDPVEISVSPANSTAKTVEQCVYPADVKKKAPMLVKLIKDGNWQQ 245

Query: 500 ---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F       N L           A IHG  S   + + +  FK+G  ++L+AT +   
Sbjct: 246 VLVFTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++     +     +H++ GR GR  E    I L     + + +    +++ 
Sbjct: 306 GIDIPQLPQVVNFELPNIAEDYVHRI-GRTGRAGEAGRAISLVCAVEAPDLFGIERLIQQ 364

Query: 614 T-----EDGFL 619
                  DGF 
Sbjct: 365 VLPRVELDGFK 375


>gi|208434194|ref|YP_002265860.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
 gi|208432123|gb|ACI26994.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
          Length = 492

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ + + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|88857449|ref|ZP_01132092.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family protein [Pseudoalteromonas
           tunicata D2]
 gi|88820646|gb|EAR30458.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family protein [Pseudoalteromonas
           tunicata D2]
          Length = 435

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 141/399 (35%), Gaps = 42/399 (10%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 +   +I + I        +  Q  AI  + +          +     G+GKT  
Sbjct: 1   MNFKSFSFAPEILRAIDECGYTELSPVQRLAIPHVRRGHDV------LANAQTGTGKTAA 54

Query: 310 ALIAMAA--------AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
             + +           V +  +A+++AP   LA+Q     ++Y +   I V  I G +  
Sbjct: 55  FALPILQKLIDTPTPRVASNAKALVLAPTRELAEQIANSFERYGKYLDISVAAIFGGVSH 114

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQ 416
             +   L+      A II+ T     + IQ   + L  V     DE  R      +   +
Sbjct: 115 KGQAIKLKA----GADIIVATPGRLLEHIQMCNVSLSNVSFLVLDEADRMLDMGFINDIK 170

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                 +L+       +TL+ ++     + + +     +  I       N   E ++ + 
Sbjct: 171 ------MLMAAVNDERQTLLFSATYPSSMKQFSASVLKQPKIVQA-TKDNSTAETVQHVV 223

Query: 477 VVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDK 530
             + E +K   +   I  K       F ++ E  +S+ E       S A+ HG  +   +
Sbjct: 224 YPVEERRKNELLSELIGRKNWHQVLVFVNMKETASSVVEELNQFGISAAVCHGDKTQGAR 283

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
              +  FK G  ++L+AT V   G+D+V    +I  +        +H++ GR GR   I 
Sbjct: 284 RRALREFKEGKVRVLVATEVAARGLDIVGLERVINVDLPFLAEDYVHRI-GRTGRAGNIG 342

Query: 591 SCILLY-----HPPLSKNSYTRLSVLKNTEDGFLIAEED 624
             +        H   +  +    S+ +    GF ++  D
Sbjct: 343 QAVSFVSREEEHTLANIEALIGTSIRRIYYPGFEVSSRD 381


>gi|313609131|gb|EFR84825.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL F2-208]
          Length = 470

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 137/370 (37%), Gaps = 38/370 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  ++ +  + ++  T  Q++ I   L           + +   GSGKT    I +A  
Sbjct: 7   SEEIKRAINELGYTEATPVQKAVIPVALIGED------IVAKSQTGSGKTAAFAIPIAEQ 60

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+I+ P   LA Q         +  ++    I G  P A ++  L +    
Sbjct: 61  VEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKN-- 118

Query: 375 QAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
             HI++GT     D I+           L+L  VDE    G   ++   L++       L
Sbjct: 119 --HIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNL 176

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             +AT       L      D   I        PI  V +  +  ++ ++   V+++E   
Sbjct: 177 FFSATMPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQTDNKEKTLKD--VLITENPD 234

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +  I    + +            + L +      + IHG +   D+   MD FK+G  + 
Sbjct: 235 SAIIFCNTKNQ-----------VDELTDLLDVKASKIHGGLRQEDRFRAMDDFKSGKSRF 283

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   GIDV + S++I  +        +H++ GR GR  +    I       +   
Sbjct: 284 LIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRI-GRTGRAGKSGKAISFVKTNENPLL 342

Query: 605 YTRLSVLKNT 614
                +L  T
Sbjct: 343 RDIEEMLNVT 352


>gi|309774568|ref|ZP_07669594.1| ATP-dependent RNA helicase, DEAD/DEAH family [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917683|gb|EFP63397.1| ATP-dependent RNA helicase, DEAD/DEAH family [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 585

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/343 (21%), Positives = 140/343 (40%), Gaps = 39/343 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMAPI 330
           T  Q  +I  I++          + + + G+GKT    I     V  G +   A+I+ P 
Sbjct: 26  TDIQAQSIPLIMEGKDV------LGRSNTGTGKTAAFGIPAIEKVCQGTRNPNALIICPT 79

Query: 331 GILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             L  Q    ++K+++    + +  I G  P   + + L+R       I++GT     D 
Sbjct: 80  RELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQIQLLKR----GCGIVVGTPGRIMDH 135

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           +    L        IL   DE    G ++ ++         + +M      +T++ ++  
Sbjct: 136 LNRRTLKLDDTNMVILDEADEMLNMGFKEDIEEI-------LSMMPEGNEHQTVLFSATW 188

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
             +I +IT K     P++  I    R  + +E++      GKKA  +   +         
Sbjct: 189 PAEILRIT-KQFQNDPVRVEIKSSQRTIDTVEQIYYEAPRGKKANALRVLLSHYDPDLCM 247

Query: 497 --ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
              +  + V E  + L++H   +I++ HG M    +  VM+ F++G   +LIAT V   G
Sbjct: 248 IFCNTKKMVDELCDELNKHDIKAISL-HGDMKQEFRSRVMEQFRSGNYPILIATDVAARG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           IDV D  +++  +        +H++ GR GR  +    I L  
Sbjct: 307 IDVDDIDLVVNFDIPQDNEYYIHRV-GRTGRAGKKGLAITLVS 348


>gi|239615016|gb|EEQ92003.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis ER-3]
 gi|327357154|gb|EGE86011.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 548

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/368 (19%), Positives = 137/368 (37%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           +   + GSGKTL   +     + A        G  
Sbjct: 152 KPTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPI 205

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T 
Sbjct: 206 VLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDLTR----GVEVCIATP 261

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++  +        L+L   D     G + +++    Q        + +AT    
Sbjct: 262 GRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMWSATWPKD 321

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIP----INRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I           T I+       + D + + L  ++ E K A  
Sbjct: 322 VRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHLDRIMEENKNAKV 381

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +            R   +    L +    +++I HG     +++ V++ FK G   +++A
Sbjct: 382 LIFT------GTKRVADDITRFLRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVA 434

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV D + ++  +  +     +H++ GR GR     + I L+    +K +   
Sbjct: 435 TDVASRGIDVRDITHVLNYDYPNNSEDYVHRI-GRTGRAGAKGTAITLFTTDNAKQARDL 493

Query: 608 LSVLKNTE 615
           +S+L  ++
Sbjct: 494 VSILTESK 501


>gi|220681310|gb|ACL80031.1| vasa-like protein [Bombyx mori]
          Length = 468

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 135/351 (38%), Gaps = 37/351 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q++AI  I   MS ++ M        GSGKT   L+ +   +             
Sbjct: 69  KPTPIQKNAIPII---MSGRDLM---GCAQTGSGKTAAFLVPIINMLLQDPKDLISENGC 122

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q +I++P   L  Q +   +K++  + + V +  G     H+   + R      HI+
Sbjct: 123 AQPQVIIVSPTRELTLQIFNEARKFSYGSVLKVAVAYGGTAVRHQGDNIAR----GCHIL 178

Query: 380 IGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T     D ++     +  +  V++DE  R      +   +K      ++   T   +T
Sbjct: 179 VATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLHPTMVE--TTKRQT 236

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI  +  +      +   +  +      +E++ + +++ +K   +   IEE
Sbjct: 237 LMFSATFPEDIQHLAGRFLN-NYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLIEE 295

Query: 495 KKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   ++        + IHG     ++E  + +FK+G   +L+AT
Sbjct: 296 NDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVAT 355

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            V   G+D+ +  I++  +        +H++ GR GR       +  Y   
Sbjct: 356 AVAARGLDIKNVDIVVNYDLPKSIDEYVHRI-GRTGRVGNRGKAVSFYDSD 405


>gi|213968691|ref|ZP_03396833.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato T1]
 gi|213926624|gb|EEB60177.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato T1]
          Length = 573

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 142/373 (38%), Gaps = 46/373 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ +I  IL           I Q   G+GKT    + +   ++      QA+I+A
Sbjct: 39  EPSAIQQQSIPIILAGHD------MIGQAQTGTGKTAAFALPILHRIDPTKREPQALILA 92

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y  Q   + V  + G  P   + KA+       A I++ T     
Sbjct: 93  PTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN----GAQIVVATPGRLC 148

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLT 438
           D ++           L+L   DE  + G    L+          ++  A P   +T++ +
Sbjct: 149 DHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLE----------VIFKAMPETRQTVLFS 198

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I  I E+   R P    I    +    IE+  +++   +K   +   +E +   
Sbjct: 199 ATLPQSIRAIAERHL-RDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFD 257

Query: 499 NFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                V          S  E      A ++G ++   +E V++S K+G   +++AT V  
Sbjct: 258 ALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAA 317

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   + +   +  +   + +H++ GR GR       +LL  P         L V++
Sbjct: 318 RGLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGREGRALLLVTPRE----RRMLQVIE 372

Query: 613 NTEDGFLIAEEDL 625
               G  +AE  L
Sbjct: 373 RVT-GQKVAEVRL 384


>gi|313638753|gb|EFS03844.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL S4-171]
          Length = 525

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 127/350 (36%), Gaps = 39/350 (11%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
             + F   T  QE  I   L           I Q   G+GKT    + M   ++      
Sbjct: 18  NRMGFEEATPIQEKTIPLGLAGKD------LIGQAQTGTGKTAAFGLPMIHKIDQKSNNV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+AP   LA Q  E + K + +  + V  + G    + + ++L++       I++GT
Sbjct: 72  QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKF----PQIVVGT 127

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I    L L  V        DE    G    +           +L       +T
Sbjct: 128 PGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDI---------ETILKEVPAERQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I +I E+     P    I        +IE+  V + E +K   +   ++ 
Sbjct: 179 LLFSATMPDPIRRIGERFM-HSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +       F     R + L             IHG ++   + SV+  FK G   +L+AT
Sbjct: 238 QAPELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   + +   +      + +H++ GR GR  +    I    P
Sbjct: 298 DVAARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGMAITFVQP 346


>gi|261837694|gb|ACX97460.1| ATP-dependent RNA helicase [Helicobacter pylori 51]
          Length = 492

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ + + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|15644875|ref|NP_207045.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 26695]
 gi|2313340|gb|AAD07315.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Helicobacter
           pylori 26695]
          Length = 492

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ S + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|269798436|ref|YP_003312336.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
 gi|269095065|gb|ACZ25056.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
           2008]
          Length = 515

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 86/417 (20%), Positives = 153/417 (36%), Gaps = 50/417 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT  Q+ AI   +           I Q   G+GKT    + +   V   E   Q VI++
Sbjct: 25  EPTPIQQEAIPVAMSGKD------MIGQAQTGTGKTAAFGLPVLERVDGNERHVQVVILS 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + K  Q T I    I G      + +AL++       II+ T     D
Sbjct: 79  PTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKK----NPQIIVATPGRLMD 134

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            +            ++L   DE    G    +     A              +TL+ ++ 
Sbjct: 135 HMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPED---------HQTLLFSAT 185

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---E 497
               I ++ E     +P    + P     ++IE+  + + + +K   +C   + +     
Sbjct: 186 MPKAIQQLAETYLT-EPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDIQTPELA 244

Query: 498 SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F     R + + E           IHG +S   ++SV+  F+ GT  +L+AT V   G
Sbjct: 245 IIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+   S +   +      +  H++ GR GR  +         P   ++ +    + K  
Sbjct: 305 LDISGVSHVYNYDMPQDPESYTHRV-GRTGRAGKAGQAFTFVIPREMEHLHAIERLTKR- 362

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA--RKDAKHILTQ 669
                IA    +    GE+L  +Q      + +  E+ D+L  +A  +  A+ +L  
Sbjct: 363 ----KIARR--RAPSLGEVLEGQQ---RLAIESLVEMTDNLEALAPFKSSAEELLND 410


>gi|257454198|ref|ZP_05619468.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus
           SK60]
 gi|257448371|gb|EEV23344.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus
           SK60]
          Length = 777

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 128/375 (34%), Gaps = 54/375 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
           +PT  Q  AI   L+          +L    GSGKT   ++ +   +             
Sbjct: 91  TPTPIQARAIPAALEGRD------LLLSAQTGSGKTAAFVLPILHQLSELQAKEKAAEKT 144

Query: 319 EAGG---------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKAL 368
            +G          QA+I+ P   LA Q  + I+KY    + +  + + G    + + +AL
Sbjct: 145 ASGKRGRQQPKVVQALILTPTRELANQVQDSIRKYGSAMKDLYSVPLVGGAAYSGQIRAL 204

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATA 420
           ++       II+ T     D I   +        L+L   D     G    +    +AT 
Sbjct: 205 KK----GVQIIVATPGRLLDHINAQRVNLSDLTMLVLDEADRMLDMGFADDINAILEATP 260

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            H          +T++ ++  D  + KI E          + +    IDE +        
Sbjct: 261 AH---------RQTIMSSATWDGPVGKIAESFTKDPERINIKVETAHIDEKVYFCDNFDH 311

Query: 481 EGKKAYWICPQIEEKKESNF---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           + K    +    E  +   F   +   E      + +      +HG +    +  ++   
Sbjct: 312 KNKLLEQLICDPERGQAIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKRNRIVSDL 371

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G   +++AT V   G+D+ + + +   +        +H++ GR GR       I L  
Sbjct: 372 RSGKFDIVVATDVAARGLDLPNITHVFNYDLPRQVEDYVHRI-GRSGRAGRTGIAINLCS 430

Query: 598 PPLSKNSYTRLSVLK 612
               +        LK
Sbjct: 431 RDDRRQFGNIARYLK 445


>gi|119481045|ref|XP_001260551.1| RNA helicase (Dbp), putative [Neosartorya fischeri NRRL 181]
 gi|134034066|sp|A1DGZ7|DBP2_NEOFI RecName: Full=ATP-dependent RNA helicase dbp2
 gi|119408705|gb|EAW18654.1| RNA helicase (Dbp), putative [Neosartorya fischeri NRRL 181]
          Length = 545

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 84/434 (19%), Positives = 151/434 (34%), Gaps = 55/434 (12%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-- 269
           P+  K F    P     +  E+           +   +   +P  VE        + +  
Sbjct: 77  PKFEKSFYKEHPDVAARSEREVEEF----RKKHEMTVQGRNVPRPVENFDEAGFPQYVLS 132

Query: 270 -----PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
                 F  PT  Q       L           +   + GSGKTL   +     + A   
Sbjct: 133 EVKAQGFERPTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPL 186

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +I+AP   LA Q    I K+ ++++I    + G +P+  + + L R     
Sbjct: 187 LAPGDGPIVLILAPTRELAVQIQTEISKFGKSSRIRNTCVYGGVPKGPQIRDLSR----G 242

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLL 425
             + I T     D ++  +        L+L   D     G   Q R  ++Q        +
Sbjct: 243 VEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCM 302

Query: 426 MTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLKVVL 479
            +AT     R L    L D     I           T    V+    + D++I+ L+ ++
Sbjct: 303 WSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIM 362

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
                   I            R   E    L +    +++I HG     +++ V++ FK 
Sbjct: 363 ENRGNKCLIFT-------GTKRIADEITRFLRQDGWPALSI-HGDKQQQERDWVLNEFKT 414

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +++AT V   GIDV D + ++  +  +     +H++ GR GR     + I  +   
Sbjct: 415 GKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRI-GRTGRAGAKGTAITFFTTE 473

Query: 600 LSKNSYTRLSVLKN 613
            SK +   +++L  
Sbjct: 474 NSKQARDLVTILTE 487


>gi|330960515|gb|EGH60775.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 559

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 142/373 (38%), Gaps = 46/373 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ +I  IL           I Q   G+GKT    + +   ++      QA+I+A
Sbjct: 28  EPSAIQQQSIPIILAGHD------MIGQAQTGTGKTAAFALPILHLIDPSKREPQALILA 81

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y  Q   + V  + G  P   + KA+       A I++ T     
Sbjct: 82  PTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN----GAQIVVATPGRLC 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLT 438
           D ++           L+L   DE  + G    L+          ++  A P   +T++ +
Sbjct: 138 DHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLE----------VIFKAMPETRQTVLFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I  I E+   R P    I    +    IE+  +++   +K   +   +E +   
Sbjct: 188 ATLPQSIRAIAERHL-RDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFD 246

Query: 499 NFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                V          S  E      A ++G ++   +E V++S K+G   +++AT V  
Sbjct: 247 ALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   + +   +  +   + +H++ GR GR       +LL  P         L V++
Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGREGRALLLVTPRE----RRMLQVIE 361

Query: 613 NTEDGFLIAEEDL 625
               G  +AE  L
Sbjct: 362 RVT-GQKVAEVRL 373


>gi|321467260|gb|EFX78251.1| hypothetical protein DAPPUDRAFT_213150 [Daphnia pulex]
          Length = 487

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 139/369 (37%), Gaps = 45/369 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L      + M+ I Q   GSGKTL   +     +          G  
Sbjct: 82  EPTSIQAQGWPIAL----SGSNMVGIAQ--TGSGKTLAYTLPAIVHINHQPYLEPGDGPI 135

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LAQQ     K +  +++I    + G  P+  + + +ER       I+I T 
Sbjct: 136 ALILAPTRELAQQISSTAKDFGSSSRIRNTCVFGGAPKGPQLRDIER----GVEIMIATP 191

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D ++  K        L+L   D     G + +++           +    P  +TL
Sbjct: 192 GRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI---------IEQIRPDRQTL 242

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    ++ ++ E+         V       +  I ++  V  E +K   +   ++E 
Sbjct: 243 MWSATWPKEVRQLAEEFLTDYIQINVGSLTLSANHNILQIIDVCQEHEKETKLMTLLQEI 302

Query: 496 KESN---------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              +          +  V+               IHG  +  +++ V++ F++G   +L+
Sbjct: 303 GAEDENKTIIFAETKRKVDSITRAMRRDGWPAMCIHGDKAQPERDWVLNEFRSGKAPILV 362

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV D   +I  +  +     +H++ GR GR +   +    + P  SK +  
Sbjct: 363 ATDVAARGLDVDDVKFVINFDYPNCSEDYVHRI-GRTGRSQRTGTAYTFFTPNNSKQAQD 421

Query: 607 RLSVLKNTE 615
            ++VL    
Sbjct: 422 LVNVLTEAN 430


>gi|163746995|ref|ZP_02154351.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161379556|gb|EDQ03969.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 529

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 137/370 (37%), Gaps = 48/370 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           SPT  Q  AI   L+          +     G+GKT    + M + +  G       +++
Sbjct: 24  SPTPIQAGAIPPALEGRDV------LGIAQTGTGKTASFTLPMLSLLARGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y+++ ++   ++ G +    + K +++       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDK----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRT- 434
             D  +  KLIL     ++VDE  R      +   ++           L  +AT  P   
Sbjct: 134 LLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLFFSATMAPEIE 193

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLS-------EGK 483
            +  T L + +  ++  +    + I   ++      +  E  E+ K++         +  
Sbjct: 194 RITNTFLSNPERIEVARQATTSENITQGVVMFKASRKDREATEKRKLLRMLIDAEGEKCT 253

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            A   C +         +  V+      +      A IHG +    +   +D F+NG  +
Sbjct: 254 NAIIFCNR---------KMDVDTVAKSLKKHGYDAAPIHGDLDQSQRTKTLDGFRNGELR 304

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
            LIA+ V   G+DV   S +   +        +H++ GR GR       I++  P   KN
Sbjct: 305 FLIASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRI-GRTGRAGRDGKAIMICVPRDEKN 363

Query: 604 SYTRLSVLKN 613
                 +++ 
Sbjct: 364 FEDVERLVQK 373


>gi|296116543|ref|ZP_06835153.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976755|gb|EFG83523.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 539

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 137/369 (37%), Gaps = 38/369 (10%)

Query: 261 IAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
             Q+ +  + +  PT  Q  AI  IL           +     G+GKT    + M   + 
Sbjct: 58  PIQQAIEEMGYRHPTPIQAQAIPYILMGRDV------LGVAQTGTGKTASFTLPMLEILS 111

Query: 320 AG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                    +++I+ P   LA Q  E    Y ++ ++   ++ G    A +++AL R   
Sbjct: 112 GSRARARMPRSLILEPTRELALQVAENFVNYGKHLKLTHALLIGGESMAEQKEALNR--- 168

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               ++I T     D  +   L+L       +DE  R      +   +K      ++   
Sbjct: 169 -GVDVLIATPGRLIDLFERGGLLLTQTKLLVIDEADRMLDMGFIPDIEK------IVSML 221

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           +PI +TL  ++    +I ++ +         TV  P + +   IE   V++ E  K   +
Sbjct: 222 SPIRQTLFFSATMAPEIRRLADMFLHNPKEITVSRPSS-VASTIETGLVIVEEDDKRRAL 280

Query: 489 CPQIEEKKESNFRSVVER-------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
              + E    N      R         SL +H   S   +HG +    + S +++FK+G 
Sbjct: 281 RKLLRESDMQNAIIFCNRKRDVDVLCKSLLKHG-FSAGALHGDLPQSLRFSTLEAFKSGE 339

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            K+L+ + +   GID+   S +   +        +H++ GR GR         L  P   
Sbjct: 340 LKILVCSDIAARGIDIGGLSHVFNFDLPFHAEDYVHRI-GRTGRAGRTGHAYSLATPYEQ 398

Query: 602 KNSYTRLSV 610
             +     +
Sbjct: 399 PLAEAIEKL 407


>gi|197334932|ref|YP_002155940.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197316422|gb|ACH65869.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 431

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 66/356 (18%), Positives = 131/356 (36%), Gaps = 27/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
             T  Q+ AI    +          +     G+GKT    + +   +            +
Sbjct: 23  KLTPIQQKAIPLARKGHD------ILANAQTGTGKTAAFALPVIQQLLDSKKSATRRTAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA+Q    I  YT+ T + V  + G    + + +ALE        I++ T 
Sbjct: 77  ALILAPTRELAEQIAVNIADYTKYTSLTVTSVFGGKKMSSQERALEP----GVDILVATP 132

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
              Q+ I+   + +  + E   F    R+       A   ++M     P+ ++ ++    
Sbjct: 133 GRLQEHIEEENVSIANL-EFLVFDEADRMLDMGFVNAIRNIMMEVNTSPQIMLFSATSSA 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---F 500
            ++K+      RKP +  + P N     I  +   + E +K   +   I  K       F
Sbjct: 192 QMNKLASD-ILRKPKRISVDPENTTASTIAHVVYPVDEERKTELLSELIGRKNWQQVLVF 250

Query: 501 RSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +  E  N + +          + HG  +   +   ++ FK G  ++++AT V   G+D+
Sbjct: 251 VNYKETANEIVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATDVAARGLDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            D   +I  +        +H++ GR GR  +    I               ++++ 
Sbjct: 311 ADLPHVINYDMPFLAEDYVHRI-GRTGRAGKKGHAISFVSREEELTVVQVETLIQQ 365


>gi|313634128|gb|EFS00790.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL N1-067]
          Length = 526

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 127/350 (36%), Gaps = 39/350 (11%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
             + F   T  QE  I   L           I Q   G+GKT    + M   ++      
Sbjct: 20  NRMGFEEATPIQEKTIPLGLAGKD------LIGQAQTGTGKTAAFGLPMIHKIDQKSNSV 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+AP   LA Q  E + K + +  + V  + G    + + ++L++       I++GT
Sbjct: 74  QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKF----PQIVVGT 129

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I    L L  V        DE    G    +           +L       +T
Sbjct: 130 PGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDI---------ETILKEVPAERQT 180

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I +I E+     P    I        +IE+  V + E +K   +   ++ 
Sbjct: 181 LLFSATMPDPIRRIGERFM-HSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDV 239

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +       F     R + L             IHG ++   + SV+  FK G   +L+AT
Sbjct: 240 QAPELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   + +   +      + +H++ GR GR  +    I    P
Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGMAITFVQP 348


>gi|308061601|gb|ADO03489.1| ATP-dependent RNA helicase [Helicobacter pylori Cuz20]
          Length = 492

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ ++     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADR-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ + + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|303278630|ref|XP_003058608.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459768|gb|EEH57063.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 471

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 136/380 (35%), Gaps = 49/380 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q  AI  IL           +   + GSGKT    I M              G  
Sbjct: 68  KPTPIQAQAIPIILSGRDV------LGCAETGSGKTAAFSIPMIQHCLEQDPIKRGDGPF 121

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           A++MAP   LAQQ  +  K +++++      I+ G    + +R  L +       + + T
Sbjct: 122 AIVMAPTRELAQQIEKEAKVFSRSSKGFKTTIVVGGTNMSDQRSDLRQ----GVEVCVAT 177

Query: 383 HALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP-RTLV 436
                D +        ++ LVI+DE  R          ++       +M   P P +TL+
Sbjct: 178 PGRLIDHLHQGNTNLGRVSLVILDEADRMLDMGFEPQIRE-------VMQNLPTPHQTLL 230

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    ++  +       KP+K  +  ++     + +    L + +K   +C  + E+K
Sbjct: 231 FSATMPAEVESLAADYLN-KPVKVKVGAVSVPTANVAQHLEKLVDAQKVDRLCELLLEEK 289

Query: 497 ES---------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                              ++  +    L      S A  HG  S  ++E+ +  +KNG 
Sbjct: 290 AEAEKFGGSLPMTVVFVERKARADEVMELLNAEGVSAAAFHGGRSQQEREAALSDYKNGK 349

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           C +L AT V   G+DV   + ++  +        +H++ GR GR          Y    S
Sbjct: 350 CSVLCATDVAARGLDVKGIAHVVNLDMPRMFEDYVHRV-GRTGRAGMTGRATSFYTDRDS 408

Query: 602 KNSYTRLSVLKNTEDGFLIA 621
                    L   E G   A
Sbjct: 409 YIVAQVKRALAELEAGNAFA 428


>gi|212712156|ref|ZP_03320284.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM
           30120]
 gi|212685203|gb|EEB44731.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM
           30120]
          Length = 477

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 136/369 (36%), Gaps = 38/369 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           +  + +  PT  Q+ AI  +L           +     G+GKT    + +   +    + 
Sbjct: 45  INELGYESPTPIQQQAIPAVLAGKD------LLASAQTGTGKTAGFTLPILQKLVDNPRG 98

Query: 324 -------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                  A+I+ P   LA Q  E +K+Y+++ +I   ++ G +    +   L     G  
Sbjct: 99  NNRRPIRALILTPTRELAAQVAENVKEYSRHLKIRSFVVFGGVSINPQMMKLR----GGV 154

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            ++I T     D     ++   ++ + ++DE  R      +            ++T  P 
Sbjct: 155 DVLIATPGRLLDLEHQNAVDLSQVEVFVLDEADRMLDMGFIHDI-------RRVITKLPK 207

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  K         P+   + P N   E + +   ++ + +KA  +   
Sbjct: 208 KRQNLLFSATFSDEIKQLASKLLNNPVSIEVAPRNSASEQVTQYVHLVDKNRKAELLSFM 267

Query: 492 IEEKKESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           I  +       F       N L EH        A IHG  S   +   +  FK+G  ++L
Sbjct: 268 IGRENWQQVLVFTRTKHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDIRVL 327

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT +   G+D+     ++     +     +H++ GR GR E     + L     +K   
Sbjct: 328 VATDIAARGLDIEQLPYVVNFELPNVAEDYVHRI-GRTGRAEATGMAVSLVCIDEAKLLK 386

Query: 606 TRLSVLKNT 614
               +LK +
Sbjct: 387 DIEKLLKKS 395


>gi|158284342|ref|XP_306246.4| Anopheles gambiae str. PEST AGAP012523-PA [Anopheles gambiae str.
           PEST]
 gi|157021090|gb|EAA02455.4| AGAP012523-PA [Anopheles gambiae str. PEST]
          Length = 720

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/377 (19%), Positives = 131/377 (34%), Gaps = 42/377 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q  AI   L           I     GSGKT   L  M   +          G  
Sbjct: 225 TPTPIQAQAIPAALSGRD------IIGIAKTGSGKTAAFLWPMLVHIMDQRELGPGDGPI 278

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   L+ Q Y   KK+ +   I +    G   +  + KALE+     A I++ T 
Sbjct: 279 GLILAPTRELSLQIYNEAKKFGKVYNISICCCYGGGSKWEQSKALEQ----GAEIVVATP 334

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPR 433
               D ++           L+L   D+    G + +++            LL +AT   R
Sbjct: 335 GRMIDMVKIKATNLQRVTYLVLDEADKMFNMGFEPQVRSICNHIRPDRQTLLFSATFKKR 394

Query: 434 TLVLTSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L      D  +I   +       +   II +  +      L   L +      +   
Sbjct: 395 VEKLARDVLTDPVRIIHGDLGEANSDVTQRIILLPTVQSKWNWLLTNLVKMLSEGSVLIF 454

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           + +K ++   +   R         + + ++HG M   ++  V+  FK     +++AT V 
Sbjct: 455 VTKKADAEETANNLRLKD------NDVVLLHGDMDQSERNFVITRFKRKDVDIMVATDVA 508

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     ++  +         H++ GR GR  E  +   L      + S   +  L
Sbjct: 509 ARGLDIPHIRTVVNYDIARDIDTHTHRI-GRTGRAGEKGTAYTLITDKDKEFSGHLVRNL 567

Query: 612 KNT-----EDGFLIAEE 623
           +       ED   +A +
Sbjct: 568 EGANQDVPEDLMKLAMQ 584


>gi|332662165|ref|YP_004444953.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332330979|gb|AEE48080.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 451

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/378 (18%), Positives = 142/378 (37%), Gaps = 42/378 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGG----QAVIMA 328
           T  QE AI  IL+          I     G+GKT   ++ +    +E+G     Q +++ 
Sbjct: 25  TPIQEKAIPIILEGKD------LIGIAQTGTGKTAAFILPVLNEIIESGEANFIQTLVIV 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I+ Y+  T +    I G        +    +  G   I+I T      
Sbjct: 79  PTRELAVQIDQVIEAYSYFTGVSSIAIYGGGDGKEFAQEKNALVSG-VDIVIATPGRLIS 137

Query: 389 S-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
                 + + KL  +++DE  R                  ++       +TL+ ++    
Sbjct: 138 HLNMGYVNFSKLRFLVLDEADRMMDMGFQPDLM------RIIGKIPQKRQTLLFSATMPE 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---F 500
            + K+  +       ++V I +++  E + +   V+ E +K   +   ++++K      F
Sbjct: 192 SVMKLARQ--LTHNAESVSIALSKPAEGVTQRAYVVYEEQKLQLVTELLKDRKGQRIVVF 249

Query: 501 RSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            S     +SL+        S+  +   +    +E  M +F+N    +++AT VI  GIDV
Sbjct: 250 CSSKASVSSLYSKLHRKNLSVGQMSSDVEQDQREETMLAFRNSKIDIIVATDVISRGIDV 309

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
               +++  +        +H++ GR  R E     I L  P           ++      
Sbjct: 310 DGIDLVVNYDVPRDPEDYVHRV-GRTARAERKGEAITLVSPGDQLRFRRIEKLI------ 362

Query: 618 FLIAEEDLKQRKEGEILG 635
               ++D+++    + LG
Sbjct: 363 ----DKDIEKLGPPQNLG 376


>gi|30249765|ref|NP_841835.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30180802|emb|CAD85718.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 457

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 140/344 (40%), Gaps = 38/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +PT  Q+ AI D++           +     G+GKT   ++     +         G + 
Sbjct: 23  APTPIQQQAIPDLIAGHDV------MASAQTGTGKTAAFMLPALHRLATPAQIRGRGPRI 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +   KY +    I V  I G MP   + K L +       +++ T 
Sbjct: 77  LVLTPTRELALQVSDAASKYGKFLPRINVVSILGGMPYPLQNKLLSQ----TVDVLVATP 132

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D I+     + +L ++++DE  R      ++  ++       +  +TP   +TL+ 
Sbjct: 133 GRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIQDVER-------IALSTPATRQTLLF 185

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE--- 494
           ++  D+ I KI  +         V     ++D + +R+  V     K   +   + +   
Sbjct: 186 SATLDVAIEKIATRLLKAPKRIQVAAQHTKLDHIEQRMHYVDDLTHKNRLLDHLLRDTTI 245

Query: 495 KKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           K+   F +     +SL ++ +S     A +HG M+  ++   +   + G  K+L+AT V 
Sbjct: 246 KQAIVFTATKRDADSLADNLSSQGHKAAAMHGDMTQRERTRTLTGLRQGRLKILVATDVA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GID+ D + +I  +   F    +H++ GR GR       +  
Sbjct: 306 ARGIDIADITHVINFDLPKFAEDYVHRI-GRTGRAGASGIAVSF 348


>gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
 gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
          Length = 469

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 142/370 (38%), Gaps = 41/370 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ + SPT  Q  AI  +L+          +     G+GKT    + M  ++      
Sbjct: 30  LDDLGYVSPTPIQVQAIPLVLEGKDV------MGAAQTGTGKTAGYSLPMLQSLLFSANT 83

Query: 323 ---------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                    +A+I+ P   LA Q +E +K+Y + T +   ++ G +  + +   L     
Sbjct: 84  SMSPARHPVRALILVPTRELADQVFEDVKRYAKYTPVKSAVVFGGVDISSQTSILRA--- 140

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               I+I T     D +Q   + L       +DE  R      L   Q       ++   
Sbjct: 141 -GVEILIATPGRLLDHVQQKNVNLSHTQILVLDEADRMLDMGFLPDLQ------RIVNLL 193

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               + L+ ++    DI K+  +   + P+   +   N   E +++    + E +K   +
Sbjct: 194 PKQRQNLLFSATFSNDIKKLA-RSFMKDPVTVEVARQNATAENVKQTVYRIEESEKNAAV 252

Query: 489 CPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              ++++ +       N ++   R     E      + IHG  +  ++ + +++FK+G+ 
Sbjct: 253 EHLLKDRNQEQVLIFSNTKAGASRLARQLERKGMKASAIHGDKTQAERMATLEAFKSGSI 312

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+ + +   +I  +        +H++ GR GR       I LY     +
Sbjct: 313 DILVATDVAARGLHIEELPCVINFDLPFVAEDYVHRI-GRTGRAGSKGEAISLYSEKDER 371

Query: 603 NSYTRLSVLK 612
                  + K
Sbjct: 372 LLKEIEKLTK 381


>gi|221638948|ref|YP_002525210.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131]
 gi|221159729|gb|ACM00709.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131]
          Length = 524

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 145/390 (37%), Gaps = 54/390 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+          +     G+GKT    + M   +  G       +++
Sbjct: 24  TPTPIQAQAIPHALEGKDV------LGIAQTGTGKTASFTLPMITILGKGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y +++++   ++ G +    + K ++R       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDR----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     ++VDE  R      +   ++       + + TP   +TL  ++
Sbjct: 134 LLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIER-------IFSLTPFTRQTLFYSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-------KVVLSEGKKAYWICPQI 492
               +I +IT        +K  +       E IE+        +   S   K   +   I
Sbjct: 187 TMAPEIERITNTFLTG-AVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRALI 245

Query: 493 EEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             + E         N +  V+      +    + + IHG +    +   +D F++G+  L
Sbjct: 246 RAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSLHL 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+A+ V   G+D+   S +   +        +H++ GR GR         +  P   K+ 
Sbjct: 306 LVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRI-GRTGRAGRKGKAYTIAVPSDEKHV 364

Query: 605 YTRLSVLK------NTEDGFLIAEEDLKQR 628
               S++K         +GF +  ED   R
Sbjct: 365 TAIESLVKQAIPRGELPEGFSL--EDRPDR 392


>gi|254830000|ref|ZP_05234655.1| hypothetical protein Lmon1_01525 [Listeria monocytogenes 10403S]
          Length = 470

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 137/370 (37%), Gaps = 38/370 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  ++ +  + ++  T  Q++ I   L           + +   GSGKT    I +A  
Sbjct: 7   SEEIKRAINELGYTEATPVQKAVIPVALTGED------IVAKSQTGSGKTAAFAIPIAEQ 60

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+I+ P   LA Q         +  ++    I G  P A ++  L +    
Sbjct: 61  VEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKN-- 118

Query: 375 QAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
             HI++GT     D I+           L+L  VDE    G   ++   L++       L
Sbjct: 119 --HIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNL 176

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             +AT       L      +   I        PI  V +  +  ++ ++   V+++E   
Sbjct: 177 FFSATMPEEMQDLIKRYQDNPMVIEMASEKTNPIFHVEMQTDNKEKTLKD--VLITENPD 234

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +  I    + +            + L +      + IHG +   D+   MD FK+G  + 
Sbjct: 235 SAIIFCNTKNQ-----------VDELTDLLDVKASKIHGGLRQEDRFRAMDDFKSGKSRF 283

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   GIDV + S++I  +        +H++ GR GR  +    I       +   
Sbjct: 284 LIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRI-GRTGRAGKSGKAISFVKTNENPLL 342

Query: 605 YTRLSVLKNT 614
                +L  T
Sbjct: 343 RDIEEMLDVT 352


>gi|313885567|ref|ZP_07819317.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619297|gb|EFR30736.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 526

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 133/347 (38%), Gaps = 34/347 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + F  PT  Q+ AI  +LQ          + Q   G+GKT    + M   ++     
Sbjct: 16  LDELGFEEPTPIQQQAIPFVLQGRD------LVGQAQTGTGKTAAFGLPMLQGLDTDHRA 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+AP   LA Q ++ +   ++  +  V  + G      +   ++RI   +  +I+G
Sbjct: 70  LQALIIAPTRELAIQVHDELYSLSKGLKTKVYAVYGGYSIGKQ---IDRIQKLKPQVIVG 126

Query: 382 THALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPI 431
           T     D ++           LI+   DE    G  + +K    Q  ++   L+ +AT  
Sbjct: 127 TPGRLLDLMRRQIIDTSYLKTLIMDEADEMLNMGFIEDIKAIVEQTPSSRQTLMFSATMP 186

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              + L    L      KI  K      I    +     ++     +++  E      I 
Sbjct: 187 KSVQNLAQQFLTQPAEVKIEAKHLTADLIDQYFVKCRDSEKFDILTRMLDIESPDKAIIF 246

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +++ +   R +  R             +IHG ++   +  VM+ FK G  +LL+AT 
Sbjct: 247 ARTKKRVDEIGRGLSLR--------GYDAELIHGDVTQQKRTQVMNEFKQGRLELLVATD 298

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           V   GIDV   + +   +      + +H++ GR GR       +   
Sbjct: 299 VAARGIDVSGVTHVYNYDIPQDPESYVHRI-GRTGRAGNEGQSVTFV 344


>gi|188585530|ref|YP_001917075.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350217|gb|ACB84487.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 474

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/352 (22%), Positives = 131/352 (37%), Gaps = 40/352 (11%)

Query: 266 LRNIPFSPT-KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           +  + F  T   Q  AI  ++           I Q   G+GKT    I     ++     
Sbjct: 17  ISEMGFEETTPIQRQAIPQVMNGQD------IIGQAQTGTGKTAAFGIPYIERIQDPNNK 70

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             + +++ P   LA Q  E I +  Q   I    I G     H+ KAL++    +  II+
Sbjct: 71  EIKGLVVTPTRELAIQVAEEINRLGQYNGITALPIYGGQSIGHQIKALKK----RPQIIV 126

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D +    + L  V        DE    G  + +K   + T  H          
Sbjct: 127 GTPGRLIDHLNRKTIKLNNVNMVTLDEADEMLNMGFIEDIKTILQKTPSH---------K 177

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I  + E+     P              IE+  V + EG K    C  +
Sbjct: 178 QTLMFSATMPGPIKSLAEQFMN-DPEIIRTKTKEITVPSIEQQYVEVKEGDKFDVFCRLV 236

Query: 493 EEK---KESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + +   K   F     R + L++           IHG M    ++ V+ +F+ G  +LL+
Sbjct: 237 DSQSPEKAIVFGRTKRRVDELYQALKKRGYFAEGIHGDMPQTKRDHVIKNFRTGATELLV 296

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT V   G+DV   S I   +      + +H++ GR GR  +  + + L  P
Sbjct: 297 ATDVASRGLDVTGISHIYNFDIPQDADSYVHRI-GRTGRAGQSGAAVTLVTP 347


>gi|254481835|ref|ZP_05095078.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214037964|gb|EEB78628.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 435

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 130/371 (35%), Gaps = 41/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
            P+  Q  AI  +L           +     G+GKT    + +   + A         +A
Sbjct: 23  EPSPIQAKAIPAVLSGKDV------MAAAQTGTGKTAAFTLPILQRLNASAPIKPHRIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y  +T +   ++ G +    +   L R       I+I T  
Sbjct: 77  LILTPTRELAAQVAQSVSTYGLHTPLKSAVVFGGVKINSQIAQLRR----GVDILIATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      + + +L ++++DE  R      +            ++   P  R  +L S
Sbjct: 133 RLLDLHGQGEVDFGELEILVLDEADRMLDMGFIHDI-------RRILKLLPAERQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                  +   K   + PI+  +   N   + +E+    + + +K   +   +EEK  + 
Sbjct: 186 ATFAAEIRELTKKFLQDPIEVEVASRNATADKVEQWVYPVDKKRKGALLRELVEEKCWTQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     +        IHG  S   +   ++ FK+G  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANRLAQQLDKAGIEATAIHGNKSQGARTRALEDFKSGRLRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL-- 611
           G+D+     ++  +  +     +H++ GR GR         L      K       ++  
Sbjct: 306 GLDIAQLPQVVNFDLPNVAQDYVHRI-GRTGRAGASGKAYSLVCADEIKQLNDIEQLIQR 364

Query: 612 ---KNTEDGFL 619
              +   DGF 
Sbjct: 365 HLPREYIDGFE 375


>gi|328697425|ref|XP_003240334.1| PREDICTED: ATP-dependent RNA helicase p62-like isoform 2
           [Acyrthosiphon pisum]
          Length = 516

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 87/434 (20%), Positives = 164/434 (37%), Gaps = 50/434 (11%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIA-LLLMRKQFKKEIGIPINVEGK-----IAQKIL 266
              K+F    P  ER +Y+E+   +    + +    +  +  PI    +         ++
Sbjct: 58  PFKKEFYVPHPTIERRSYEEVDKYRTGKDITVMSSDRSPVPYPIQHFKEANFPDYVMTVI 117

Query: 267 RNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
           RN  F  PT  Q       +        M+ + Q   GSGKTL   +     +       
Sbjct: 118 RNEGFTEPTPIQAQGWPIAM----SGKNMVGVAQ--TGSGKTLGYTLPAVVHINNQEPLK 171

Query: 321 ---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
              G  A+++AP   LAQQ  +    + Q+T +    I G  P++H+ + L         
Sbjct: 172 KGDGPIALVLAPTRELAQQIQKVAGLFNQSTYLRSTCIYGGAPKSHQARDL----MNGVE 227

Query: 378 IIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMT 427
           I+I T     D ++           L+L   D     G   Q R  + Q      VL+ +
Sbjct: 228 IVIATPGRLLDFLESRATNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQVLMWS 287

Query: 428 ATPIPRTLVLTSLGDIDISKIT----EKPAGRKPIKTVII--PINRIDEVIERLKVVLSE 481
           AT       L +    D  ++        A    ++ V +     + D++++ L+ + + 
Sbjct: 288 ATWPKEVQKLANDFLSDYIQLNVGSLTLSANHNILQNVDVCQEHEKEDKLMDLLQDIANM 347

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            +    I  + + K ++  R +         +  +    IHG  S  +++ V+  F+ G 
Sbjct: 348 EENKTIIFAETKRKVDTITRKIT--------NMGARAVGIHGDKSQSERDHVLKQFRGGR 399

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   G+DV D   +I  +  +     +H++ GR GR  +  +    +    S
Sbjct: 400 ANILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRI-GRTGRSSQKGTSYAFFTHSNS 458

Query: 602 KNSYTRLSVLKNTE 615
           K +   ++VL    
Sbjct: 459 KQAKDLVAVLTEAN 472


>gi|302038923|ref|YP_003799245.1| DEAd-box RNA helicase [Candidatus Nitrospira defluvii]
 gi|300606987|emb|CBK43320.1| DEAD-box RNA helicase [Candidatus Nitrospira defluvii]
          Length = 576

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/353 (21%), Positives = 134/353 (37%), Gaps = 39/353 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           L  + +  PT  Q  AI  +L+          + Q   G+GKT    + +   +  G + 
Sbjct: 34  LEALGYEEPTPIQREAIPPLLEGRD------LLGQAATGTGKTAAFALPLLQRIAHGPRQ 87

Query: 324 ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              A+++ P   LA Q  E +++Y +  +I V  + G      + +AL R       +I+
Sbjct: 88  RPTALVLVPTRELAVQVSEAVQRYGKELRIGVLALYGGQAMGPQLQALRR----GVEVIV 143

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATP 430
            T     D ++   L        +L   DE    G    L   L Q        L +AT 
Sbjct: 144 ATPGRALDHLRRKTLKLADLQVVVLDEADEMLDMGFADDLDAILEQTPAGKQTALFSATM 203

Query: 431 IPRT--LVLTSLGDIDISKITEKPA---GRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
            PR   +    L +     I  +P        ++     + R  +V    +V+     K+
Sbjct: 204 PPRIASIARRHLKNPVDVTIAREPVKAGAAPRVQQTAYVVARQHKVSALARVLDIATPKS 263

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             +  +         R  V+   +           IHG MS + ++ VM +F++G  +LL
Sbjct: 264 ALVFCRT--------RLEVDEVTAALNGRGYRAEAIHGGMSQVQRDRVMQAFRSGQTELL 315

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +AT V   G+D+   S +I  +        +H++ GR GR     + + +  P
Sbjct: 316 VATDVAARGLDIPSVSHVINYDLPSSLEVYVHRI-GRTGRAGREGAAMTIIEP 367


>gi|195998213|ref|XP_002108975.1| hypothetical protein TRIADDRAFT_63563 [Trichoplax adhaerens]
 gi|190589751|gb|EDV29773.1| hypothetical protein TRIADDRAFT_63563 [Trichoplax adhaerens]
          Length = 654

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/366 (20%), Positives = 139/366 (37%), Gaps = 41/366 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q  +    L        ++ I Q   GSGKTL  ++     ++         G  A
Sbjct: 102 PTPIQAQSWPVGL----SGRDVVGIAQ--TGSGKTLAYVLPSIIHIKNQPPLRHGDGPIA 155

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LAQQ +     + +  +I    I G  P+  + + L R       I + T  
Sbjct: 156 LILCPTRELAQQVHSVSTTFGRLARINCACIYGGSPKGPQLRELSR----GVEICVATPG 211

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAPHVLLMTATPIP--- 432
              D ++  +        L+L   D     G + Q  ++      P   +M +   P   
Sbjct: 212 RLLDFLESRRTNLNRCSYLVLDEADRMLDMGFEPQIKQIIGSIKCPRQTVMWSATWPKEI 271

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RTL    L D     I             I+ + R +E  ++L  +LS+         + 
Sbjct: 272 RTLAREFLRDYVQINIGSSDLTTNHNIKQIVEVCREEEKEDKLCKLLSD-------ILRQ 324

Query: 493 EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +EKK   F    ++ + L      S   +  IHG     +++ V+  F++G   +LIAT 
Sbjct: 325 DEKKTIVFVETKKKSDYLSRRLVRSGWPVLCIHGDKCQSERDRVLSEFRSGRIPVLIATD 384

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D  ++I  +  +     +H++ GR  R  +  +    +     + S   ++
Sbjct: 385 VAARGLDISDVKLVINYDFPNNSEDYVHRI-GRTARSGKTGTAYTFFTASNIRQSPNLIA 443

Query: 610 VLKNTE 615
           +L+   
Sbjct: 444 LLREAN 449


>gi|84498694|ref|ZP_00997447.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84381031|gb|EAP96918.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 601

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 131/368 (35%), Gaps = 41/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q + I  +L           +     G+GKT    + + + ++      QA+++A
Sbjct: 43  TPSPIQAATIPALLAGR------HVVGLAQTGTGKTAAFALPILSRLDLKQKTPQALVLA 96

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY  +   + V  + G      +  AL R      HI++GT     
Sbjct: 97  PTRELALQVCEAFEKYASRMPGVHVLPVYGGQAYGVQLSALRR----GVHIVVGTPGRIM 152

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVL 437
           D ++           L+L   DE  + G  + +   L       HV L +AT   +   +
Sbjct: 153 DHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPAEKHVALFSATMPSQIRRI 212

Query: 438 TSLGDIDISKIT-EKPAGRKPIKT----VIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +     D  +IT E+     P  T          +ID +   L+V   EG   +      
Sbjct: 213 SKKYLTDALEITVERTTETAPNITQRYLFCSYPQKIDALTRILEVENFEGMIVFV----- 267

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   ++  E           S   I+G ++   +E  +   K+G   +L+AT V  
Sbjct: 268 ------RTKNETEMLAEKLRARGFSATAINGDIAQNQRERTVAQLKSGKLDILVATDVAA 321

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   S ++  +      + +H++ GR GR       I    P             K
Sbjct: 322 RGLDVERISHVVNYDIPTDTESYVHRI-GRTGRAGRSGDAISFVTPREKYLLKAIEKATK 380

Query: 613 NTEDGFLI 620
            T     +
Sbjct: 381 TTLTEMQL 388


>gi|229176129|ref|ZP_04303622.1| ATP-dependent RNA helicase dbpA [Bacillus cereus MM3]
 gi|228607364|gb|EEK64693.1| ATP-dependent RNA helicase dbpA [Bacillus cereus MM3]
          Length = 481

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 144/381 (37%), Gaps = 40/381 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  ++ L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   
Sbjct: 12  SKEVRRALTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+++ P   LA Q  E I    +  +I    I G  P A ++  L++    
Sbjct: 66  VEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ---- 121

Query: 375 QAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
           + HI++GT     D I+           L++   DE    G   ++   + +  T    +
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 425 LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT       L  T +      +I         I+  +  +   +++     V + E 
Sbjct: 182 LFSATLPEDVEKLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTMIEN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I  + +E  +  +R          +        IHG M   D+  VMD F+ G  
Sbjct: 242 PDSCIIFCRTQENVDHVYRQ--------LKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKF 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + L+AT V   GID+ + + +I  +      + +H+  GR GR       I    P  ++
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNNGKAITFITPYENR 352

Query: 603 NSYTRLSVLKNTEDGFLIAEE 623
                   +     GF I +E
Sbjct: 353 FLEEIEEYI-----GFEIPKE 368


>gi|303238460|ref|ZP_07324994.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593858|gb|EFL63572.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 481

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 81/348 (23%), Positives = 140/348 (40%), Gaps = 40/348 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPTK QE  I  +L+          I++   GSGKT    I +   V   E   Q +++ 
Sbjct: 26  SPTKVQEMVIPAVLEHKDV------IVKSQTGSGKTAAFAIPICDLVDWDENKPQVLVIT 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I    +  ++ V  I G     ++ K L++    + H+++GT     D
Sbjct: 80  PTRELAIQVKEDIFNLGRFKRLKVSAIYGRSSFYNQEKELKQ----KTHVVVGTPGRIID 135

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            ++           LI+   DE    G  ++++           +        T++L++ 
Sbjct: 136 HLERGTFDTSKIKYLIIDEADEMLSMGFVEQIEDI---------IGKLPDERTTILLSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKES 498
              DI+ + +K   + P+   I   N+  + I + +  + E  K   +     +E     
Sbjct: 187 LPKDIAVLCDKYM-KNPVYAEIEEENKAIDRIVQERYEVDENDKLNLLRDITTLENPDSC 245

Query: 499 NFRS-----VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                      E F+ L +    +   IHG M   D+  VM+ FK G  + L+AT V   
Sbjct: 246 IIFCSTKIKTDELFDELAK-LNYTCEKIHGGMEQSDRLRVMNDFKQGYFRYLVATDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           GID+ D S++I  +      + +H++ GR GR +     I    P  S
Sbjct: 305 GIDIDDISLVINYDIPQDKESYVHRI-GRTGRVDRNGKAITFVTPDES 351


>gi|88860789|ref|ZP_01135426.1| putative ATP-dependent RNA helicase DbpA [Pseudoalteromonas
           tunicata D2]
 gi|88817384|gb|EAR27202.1| putative ATP-dependent RNA helicase DbpA [Pseudoalteromonas
           tunicata D2]
          Length = 460

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 86/453 (18%), Positives = 164/453 (36%), Gaps = 64/453 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           S T  Q  ++  IL           I Q   GSGKT    + +   ++      QA+++ 
Sbjct: 26  SMTPIQAQSLPHILSGKDV------IAQAKTGSGKTAAFALGLLENLDVRKYRVQALVLC 79

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+K  +    + V  + G +P   +  +LE      AHII+GT    +
Sbjct: 80  PTRELADQVAQEIRKLARGIPNVKVLALCGGVPMGPQIGSLEH----GAHIIVGTPGRIE 135

Query: 388 DSIQYYKLILVIV-----DEQHRFGVQQ-----RLKLTQKATAPHVLLMTATPIPRTLVL 437
           D +    L L  V     DE  R             + Q       L  +AT   +   +
Sbjct: 136 DHLSRRTLDLSHVNTLVLDEADRMLDMGFSAALDAIIDQTPRDRQTLFFSATFPEKIQQI 195

Query: 438 TSLGDIDISKIT-EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            S    D  K+  E       I+     + +  +    L+++L + +    +        
Sbjct: 196 ASRTMRDPVKVEVESSHNNVNIRQYFYKVEQNKQRTTALRLLLLKHEPNSCVVF------ 249

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R   +           S+  +HG +   +++  +  F N +  +L+AT V   G+D
Sbjct: 250 -CNTRVETQAVADELAVSGFSVLALHGELEQRERDQTLVRFANKSISILVATDVAARGLD 308

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           + +  ++I  +        +H++ GR GR     +   L+    S   Y   +V +  + 
Sbjct: 309 INELDMVINYHITQDPEVHVHRI-GRTGRAGSKGTAHSLFTDNES---YRVAAVSEYFDK 364

Query: 617 GFLIA----------------EEDLKQRK-------EGEILG--IKQSGMPKFLIAQPEL 651
            F ++                   L+           G+ILG    + G+    + +  +
Sbjct: 365 QFELSALPPFTLLDKVPEKPLMVTLQIDGGKKQKVRPGDILGALTSKDGIAGKQVGKITV 424

Query: 652 --HDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
             + + + +AR  AK  L +  +   ++G+  R
Sbjct: 425 LENFAYVAVARDAAKPALRKLGE-DKIKGRLFR 456


>gi|228915063|ref|ZP_04078662.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844597|gb|EEM89649.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 447

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++      QA+I+AP 
Sbjct: 26  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPECGDVQALIVAPT 79

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 80  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 135

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 136 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 194

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 195 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 253

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 254 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 313

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 314 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 360


>gi|205375157|ref|ZP_03227948.1| DEAD-box ATP dependent DNA helicase [Bacillus coahuilensis m4-4]
          Length = 398

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/359 (22%), Positives = 146/359 (40%), Gaps = 30/359 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  Q   I  +++          I Q   GSGKTL  ++ M   V+      Q +I+A
Sbjct: 24  EPTPIQTEVIPLMVEGRDV------IAQAKTGSGKTLAFILPMLEKVDLEKIAVQGLIVA 77

Query: 329 PIGILAQQHYEFIKK--YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           P   LA Q  + +KK    +  ++ V  + G      +   LE       HI++ T    
Sbjct: 78  PTRELAIQVTDELKKLVELEFPEVNVLAVYGGQDVEKQLHKLETR---NIHIVVATPGRL 134

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            D ++   + L  +D        Q L +        ++  T  P  +T + ++    D+ 
Sbjct: 135 LDHMRRGTIDLSELDMLILDEADQMLHIGFLPEVEQIIEAT-PPTRQTALFSATISKDVR 193

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSV 503
            + ++   ++P    +    R+ E IE+  V  ++ KK   +   I+E +      F   
Sbjct: 194 TLAKRY-QQQPYTVQVKDKERLVEEIEQFVVETTDRKKLQALVEVIKETQPFMGIIFCRT 252

Query: 504 VERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           + R + LH    +    +  +HG +S   +E+VM  F++   +LLIAT V   G+DV   
Sbjct: 253 IRRVSKLHMELKAKGFLVDELHGDLSQAKRENVMKRFRDAKIQLLIATDVAARGLDVEGV 312

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
           + +   +      + +H++ GR GR  E    I       + ++      L++ E+G  
Sbjct: 313 THVYNYDIPQDVESYIHRI-GRTGRAGETGMAI-------TFSALKDKQALQSLEEGIK 363


>gi|206974096|ref|ZP_03235014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217959967|ref|YP_002338523.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|229139159|ref|ZP_04267734.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26]
 gi|206748252|gb|EDZ59641.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217065592|gb|ACJ79842.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|228644218|gb|EEL00475.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26]
          Length = 454

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEQAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +         IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMVQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|291544767|emb|CBL17876.1| Superfamily II DNA and RNA helicases [Ruminococcus sp. 18P13]
          Length = 555

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 77/351 (21%), Positives = 137/351 (39%), Gaps = 45/351 (12%)

Query: 269 IPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----GGQ 323
           + F+  T+ QE +I  ++Q +        I + + G+GKT    I    ++        Q
Sbjct: 1   MGFTEMTEIQEKSIPLMMQGID------LIGRSNTGTGKTAAFGIPAVESISQEDPRSVQ 54

Query: 324 AVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            +I+ P   LA Q  E +KK ++    +    + G      +   L+R     A+I++GT
Sbjct: 55  VLILCPTRELAMQACEELKKLSRFMPWVRPCAVYGGASMDRQIGDLKR----GANIVVGT 110

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP 432
                D +    L        IL   DE    G ++ +   L+        +L +AT  P
Sbjct: 111 PGRVMDHMNRRTLKLQNLKTVILDEADEMLNMGFREDIETILSGVPEERQTVLFSATMPP 170

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
             + +T     D + I             I   +R  + IE+     + G+K   +   +
Sbjct: 171 EIMAITKQFQKDPTVIK------------IAAKHRTVDTIEQYYYETAMGRKTDALRLLL 218

Query: 493 ---EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              E K    F +     + L E         A +HG M  + +  VM++FK+G   +L+
Sbjct: 219 LAYEPKSAMVFCNTKRTVDELTEALCDKGIQAAGLHGDMKQMQRTQVMNAFKSGRIGVLV 278

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           AT V   GIDV    ++   +        +H++ GR GR  +  + + L  
Sbjct: 279 ATDVAARGIDVNGIDLVFNYDLPQDNEYYIHRI-GRTGRAGKSGTALTLVS 328


>gi|50292931|ref|XP_448898.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74664283|sp|Q8TFK8|DED1_CANGA RecName: Full=ATP-dependent RNA helicase DED1
 gi|20086311|gb|AAM08102.1| DED1p [Candida glabrata]
 gi|49528211|emb|CAG61868.1| unnamed protein product [Candida glabrata]
          Length = 617

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 66/382 (17%), Positives = 130/382 (34%), Gaps = 43/382 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA----------AAVEAG 321
            PT  Q+ ++  + +          +     GSGKT   L  +            A   G
Sbjct: 167 KPTPVQKYSVPIVSKGRD------LMACAQTGSGKTGGFLFPVLSESFLTGPAEKAANDG 220

Query: 322 --------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                     AV+MAP   LA Q ++  KK+   + +   ++ G  P  ++     R   
Sbjct: 221 YSYQRKAFPTAVVMAPTRELATQIFDEAKKFCYRSWVKPCVVYGGAPIGNQM----REMD 276

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  K+ L  V     DE  R          Q         M  
Sbjct: 277 HGCDLLVATPGRLNDLLERGKVSLSNVKYLVLDEADRMLDMGFEP--QIRHIVEDCDMPP 334

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++    DI  +  +      I   +  +    E I +  + +    K   +
Sbjct: 335 TGERQTLMFSATFPHDIQHLA-RDFLHDYIFLSVGRVGSTSENITQRILYVENRDKNSAL 393

Query: 489 CPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +    ++        + + ++          S   IHG  S  ++E  + +F++G  
Sbjct: 394 LDLLAASNDNLTLIFVETKRMADQLTDFLIMQNFSATAIHGDRSQAERERALAAFRSGRA 453

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ + + +I  +        +H++ GR GR          ++   + 
Sbjct: 454 NILVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRI-GRTGRAGNTGVATAFFNRDNNN 512

Query: 603 NSYTRLSVLKNTEDGFLIAEED 624
                  +L+          ED
Sbjct: 513 IVKGLYEILEEANQEIPPFLED 534


>gi|304411084|ref|ZP_07392700.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307301793|ref|ZP_07581551.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304350619|gb|EFM15021.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913831|gb|EFN44252.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 469

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/432 (17%), Positives = 153/432 (35%), Gaps = 47/432 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
             T  Q  ++  IL           I QG  GSGKT    + +   ++      Q +++ 
Sbjct: 34  EMTPIQAQSLPPILAGQDV------IGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLC 87

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+   +    + V  + G +P   +  +LE      AHII+GT     
Sbjct: 88  PTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEH----GAHIIVGTPGRIV 143

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +   +L L  +          R+       A   ++  A    +TL+ ++     I  
Sbjct: 144 DHLDRNRLDLSNL-NMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLFSATFPEQIQS 202

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFR 501
           I  K     P    +   +    + +    +  +  +   +   + E K        N +
Sbjct: 203 IA-KQIMYDPSMVKVEGNHDSLSIAQHFYHLDDDKARMQALQLLLLEHKPESAVVFCNTK 261

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              ++     +    S+  +HG +   D++  +  F N +  +L+AT V   G+D+    
Sbjct: 262 RETQKVADELDGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALD 321

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            +   +  +     +H++ GR GR     +    Y+             L+       + 
Sbjct: 322 AVFNYHVAYDTEVHIHRI-GRTGRAGSKGAAYTFYNDQDGYKIALLEEYLEREITSESLP 380

Query: 622 EEDL--------------------KQRKEGEILG--IKQSGMPKFLIAQPEL--HDSLLE 657
            E L                    ++ + G+ILG    ++G+    + + ++  + + + 
Sbjct: 381 SESLLGNTPAAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKIQVTDYRAYVA 440

Query: 658 IARKDAKHILTQ 669
           + RK AK  L +
Sbjct: 441 VNRKVAKKALNK 452


>gi|315586245|gb|ADU40626.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 35A]
          Length = 492

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAKAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ S + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|303324443|ref|XP_003072209.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240111919|gb|EER30064.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 1197

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 153/426 (35%), Gaps = 55/426 (12%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ++R + +  PT  Q  AI  I+           I     GSGKT+  L+ M   ++    
Sbjct: 573 VIRKLGYEQPTSIQSQAIPAIMSGRDV------IGVAKTGSGKTIAFLLPMFRHIKDQRP 626

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +IM P   LA Q ++  K + +   +      G  P   +   L+R     
Sbjct: 627 LENMEGPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKR----G 682

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K      ++  
Sbjct: 683 AEIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMK------IISN 736

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K    KP++ ++   + + + I ++  V  E  K   
Sbjct: 737 IRPSRQTVLFSATFPRNMEALARKTLT-KPVEIIVGGRSVVAQEITQIVEVRPENTKFVR 795

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  + L             IHG    +D++S +D
Sbjct: 796 LLELLGNLYSDDNNEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTID 855

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    ++I  +A +     +H+  GR GR     + +  
Sbjct: 856 DFKAGIFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 914

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIA---EED--LKQRKEGEILGIKQSGM--PKFLIAQ 648
                 + S      LK +      A     D  L++ K G+      SG          
Sbjct: 915 LTEEQERYSVDIAKALKQSGQSVPEAVQKMVDSFLEKVKSGK-EKASASGFGGKGLERLD 973

Query: 649 PELHDS 654
            E   +
Sbjct: 974 QERDAA 979


>gi|224825377|ref|ZP_03698482.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224602298|gb|EEG08476.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 460

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 83/451 (18%), Positives = 170/451 (37%), Gaps = 47/451 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ ++  T  Q  ++  IL      NR   I Q   GSGKT    + +   +      
Sbjct: 19  LASLGYTRMTPIQAQSLPVIL------NRQDLIAQAKTGSGKTAAFGLGLLDKINPRWFA 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    I V  + G  P   +  +LE      AH+++
Sbjct: 73  VQALVLCPTRELADQVAKEIRRLARSVDNIKVVTLCGGTPMGPQIGSLEH----GAHVVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT     D +    L L  V E        R+           ++       +TL+ ++ 
Sbjct: 129 GTPGRLHDHLSRNTLDLSTV-ETLVLDEADRMVDMGFYEEIVGIVAACPRKRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ-----IEEK 495
               I K + +   + P++  +  ++    + +    +  E + A           +   
Sbjct: 188 YPDTIRKQSARFL-KNPVEVKVESLHDAGHIEQHFYKIQPERRVATVAALLGHFRPVSTI 246

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +  V    +  +    S   ++G +   +++ ++  F N +C +L+AT V   G+
Sbjct: 247 AFCNTKQQVRELANELQQQGFSALALYGELEQRERDEILVQFANRSCSVLVATDVAARGL 306

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS--------KNSYTR 607
           D+     +I  +  H     +H++ GR GRG E    + L  P  S              
Sbjct: 307 DISTLEAVINVDLSHDPEIHIHRI-GRTGRGGEKGLALSLVGPNDSKRLALIEDYQQAKP 365

Query: 608 LSV--LKNTEDG---------FLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD- 653
                 + T  G           IA     + + G+ILG    ++G+    + +  + + 
Sbjct: 366 NWADPAELTSSGSPLVPPMVTLCIAAGRKDKVRPGDILGALTGEAGIAGQQVGKISVFEF 425

Query: 654 -SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            S + + R  A+   ++  +   ++G+S ++
Sbjct: 426 SSYVALDRHIAQQAFSRLAE-GRIKGRSFKM 455


>gi|210134447|ref|YP_002300886.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
 gi|210132415|gb|ACJ07406.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
          Length = 492

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMHLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ + + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|114771133|ref|ZP_01448573.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
           HTCC2255]
 gi|114548415|gb|EAU51301.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
           HTCC2255]
          Length = 531

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 69/362 (19%), Positives = 131/362 (36%), Gaps = 28/362 (7%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + ++ PT  Q  AI  +L      N    +     G+GKT    + +   +      
Sbjct: 118 LGFLGYTLPTPIQSQAIPAVL------NSKDLVGLAQTGTGKTAAFALPLIQQLLMNPIA 171

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+I++P   LA Q +E    + +   +      G  P   + + L +      
Sbjct: 172 IKGRSARAIILSPTRELALQIHEAFVSFGKRLPLNFTHAIGGAPIRKQMRDLSK----GV 227

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I++ T    +D +    L L    +        ++       A   ++       +TL+
Sbjct: 228 DILVATPGRLEDLVDQKGLRLDE-TKFLVLDEADQMLDIGFLPAVKRIISKVNKDRQTLL 286

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I K+TE      P++  + P N   + IE+  + LS+  K   +   I    
Sbjct: 287 FSATMSKEIKKLTETYLT-DPVQVSVTPENSTVDKIEQSLMHLSKQNKGLALQRIISANP 345

Query: 497 ESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +   ++              IHG  S   ++  +D FK G   +LIAT +
Sbjct: 346 KKRVIVFSRTKHGSDKLVKWLGTQNIGADAIHGNKSQGQRQRALDDFKKGKTYILIATDI 405

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GID+    I+I  +  +   + +H++ GR  R       I    P   K  +    V
Sbjct: 406 AARGIDIPGIEIVINFDLPNVPESYVHRI-GRTARAGADGKAIAFCAPDEHKQLWDIEKV 464

Query: 611 LK 612
           +K
Sbjct: 465 IK 466


>gi|119173770|ref|XP_001239279.1| DEAD/DEAH box RNA helicase [Coccidioides immitis RS]
 gi|118597491|sp|Q1DHB2|PRP5_COCIM RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
          Length = 1197

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 153/426 (35%), Gaps = 55/426 (12%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ++R + +  PT  Q  AI  I+           I     GSGKT+  L+ M   ++    
Sbjct: 573 VIRKLGYEQPTSIQSQAIPAIMSGRDV------IGVAKTGSGKTIAFLLPMFRHIKDQRP 626

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +IM P   LA Q ++  K + +   +      G  P   +   L+R     
Sbjct: 627 LENMEGPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKR----G 682

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K      ++  
Sbjct: 683 AEIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMK------IISN 736

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K    KP++ ++   + + + I ++  V  E  K   
Sbjct: 737 IRPSRQTVLFSATFPRNMEALARKTLT-KPVEIIVGGRSVVAQEITQIVEVRPENTKFVR 795

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  + L             IHG    +D++S +D
Sbjct: 796 LLELLGNLYSDDNNEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTID 855

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    ++I  +A +     +H+  GR GR     + +  
Sbjct: 856 DFKAGIFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 914

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIA---EED--LKQRKEGEILGIKQSGM--PKFLIAQ 648
                 + S      LK +      A     D  L++ K G+      SG          
Sbjct: 915 LTEEQERYSVDIAKALKQSGQSVPEAVQKMVDSFLEKVKSGK-EKASASGFGGKGLERLD 973

Query: 649 PELHDS 654
            E   +
Sbjct: 974 QERDAA 979


>gi|290987403|ref|XP_002676412.1| predicted protein [Naegleria gruberi]
 gi|284090014|gb|EFC43668.1| predicted protein [Naegleria gruberi]
          Length = 407

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/396 (21%), Positives = 143/396 (36%), Gaps = 32/396 (8%)

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
            E    Q +     +Q + +    +N++  + + I       P+  Q+ AI  I    + 
Sbjct: 10  VEDDYKQKSGKARYEQKEVKEFDDMNLKEDLLRGIYSYGFEKPSIIQQRAILPIT---TS 66

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-----QAVIMAPIGILAQQHYEFIKKYT 345
           +     I Q   G+GKT    I++   +         Q +++AP   LAQQ ++ I    
Sbjct: 67  EPPADVIGQAQSGTGKTATFTISLLQRLNISPDVIQPQGLVLAPTRELAQQIHKVIMSLG 126

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV----- 400
           +  ++ V    G     H    LE       HII+GT       IQ   L +  +     
Sbjct: 127 EYMKVKVHACVGGTKVQHDIAILEE----GVHIIVGTPGRVFHMIQSGHLNVNSIKMLVI 182

Query: 401 ---DEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK--PA 453
              DE    G + ++            V L +AT     L +T     D  +I  K    
Sbjct: 183 DEADEMLSRGFKDQIYAIFKNLPQDMQVCLFSATMPTEVLEITDKFMRDPIRILVKKEEL 242

Query: 454 GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             + IK   I ++R D   E L          Y +    +     N R  VE+       
Sbjct: 243 TLEGIKQFYISVDREDYKFETL-------CDLYKVLTISQCVIFCNSRKKVEQLAEQLNK 295

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
              +++ +HG M   D+E +M  F+    ++LI T ++  GIDV   S++I  +      
Sbjct: 296 KDFTVSCMHGEMDPKDRELIMHEFRTSASRVLITTDLLARGIDVHHVSLVINFDLPRHKE 355

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
             LH++ GR GR       I        ++      
Sbjct: 356 NYLHRI-GRSGRYGRKGVAINFVTKDDVRSLREIEK 390


>gi|163801279|ref|ZP_02195178.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4]
 gi|159174768|gb|EDP59568.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4]
          Length = 472

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 135/361 (37%), Gaps = 36/361 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  +L+          +     G+GKT    + +   +  G +       A
Sbjct: 23  TPSPIQAQAIPAVLEGKDV------MAAAQTGTGKTAGFTLPILELLSNGPRVRANHVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +  Y+Q+  +   ++ G +    + + L +     A +++ T  
Sbjct: 77  LILTPTRELAAQVQESVFTYSQHLPLNSAVVFGGVKINPQMQRLRK----GADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYSQNAVKFDQLEVLVLDEADRMLDMGFIRDIRK-------ILDLLPKQRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +E+        KKA  +   I+E     
Sbjct: 186 ATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPSDAKKKAPMLVKLIKEGDWRQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R            A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFTRTKHGANRLAKFLIDEKLPAAAIHGNKSQSARTKALADFKSGAIRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++           +H++ GR GR  E+   I L     +   +    +++ 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRI-GRTGRAGEMGKAISLVSALEAPELFAIERLIQQ 364

Query: 614 T 614
            
Sbjct: 365 L 365


>gi|89096443|ref|ZP_01169336.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89089297|gb|EAR68405.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 543

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 81/393 (20%), Positives = 153/393 (38%), Gaps = 26/393 (6%)

Query: 230 YDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMS 289
           +DE +A   +++  +   +      + +   +  K+       PT  QE AI  +L+   
Sbjct: 3   FDEAIADNRSIVQKKAGIRLNFKH-LGISDPLIHKLAAQGIDEPTAVQEKAIPIVLEGRD 61

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILA-QQHYEFIKKYT 345
                  I Q   G+GKTL  ++ +   ++      QA+I+ P   LA Q   E  K   
Sbjct: 62  ------IIAQAQTGTGKTLAFILPILEKIDPSNGSTQALIVTPTRELALQITSEVKKLIE 115

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
               + V  + G      +   L+R    Q  I++ T     D ++   + L  V     
Sbjct: 116 DMPDLNVLAVYGGQDVEKQLHKLQR----QTQIVVATPGRLLDHLRRGTVQLDEVSFLVL 171

Query: 406 FGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
               Q L +         L+++ TP   +T++ ++    DI K+++K   ++P    I  
Sbjct: 172 DEADQMLHIGFLNEME--LIISQTPASRQTMLFSATMPDDIRKLSKKHL-KEPESIRIEK 228

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVERFNSLHEHF---TSSI 518
               ++ IE+L +  ++  K   +  +I E +      F   + R   L++       S 
Sbjct: 229 TFVPEKAIEQLAIFTTDRAKQNALISRIREDRPFLAIIFCRTIRRATKLYDALKSQRFSC 288

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG ++   +E VM  F+N   + LIAT V   G+DV   + +   +      + +H+
Sbjct: 289 EELHGDLTQAKREKVMKKFRNAEIQFLIATDVAARGLDVEGVTHVYNYDIPQDSESYVHR 348

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           + GR GR  +    +  Y              L
Sbjct: 349 I-GRTGRAGKDGLAVTFYAEKDEAALKAIEQEL 380


>gi|325280019|ref|YP_004252561.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324311828|gb|ADY32381.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 594

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 136/364 (37%), Gaps = 33/364 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           + ++ F  P+  QE  I  IL    ++N ++ + Q   G+GKT    + +   ++     
Sbjct: 17  IEDLGFEVPSPVQEKVIPVIL---GEENDLVALAQ--TGTGKTAAFGLPLLQKLDTSLNA 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +I++P   L  Q  + ++ Y +  + I V  + G      + + L+R      H+++
Sbjct: 72  IQVLILSPTRELCMQIGKDLQNYAKYRSDIRVACVYGGADIRKQIRELDR----GVHVLV 127

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATP 430
            T     D I+           ++L   DE    G ++ L     +     +  L +AT 
Sbjct: 128 ATPGRLCDLIKREAVKIEQVRAVVLDEADEMLNMGFKEDLNFILDETPAERNTYLFSATM 187

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYWIC 489
                 +      +  +I+    G+K      +       +       L      A  + 
Sbjct: 188 PREVERIAKNYLRNPQEIST---GKKNQGADTVTHEYYQVLARDCYETLHRVIDCAPDMY 244

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             I  + + + R   E    L +        +HG +S   ++ VMD F+    K+L+AT 
Sbjct: 245 AIIFTRTKMDAR---EIARKLQKDGID-CDALHGDLSQAQRDDVMDRFRAKRLKVLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV + + +I  N      +  H+  GR GR       + + +           +
Sbjct: 301 VAARGLDVDNLTHVINYNLPEDVESYTHR-SGRTGRAGREGISVAIINSKEKGKLRRIEN 359

Query: 610 VLKN 613
           +LK 
Sbjct: 360 ILKK 363


>gi|300855475|ref|YP_003780459.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300435590|gb|ADK15357.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 369

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 134/373 (35%), Gaps = 43/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            PT  Q+ +IK I +          I +   G+GKTL  L+ +   +       QA+I+ 
Sbjct: 23  KPTPIQQESIKFIREGKDV------IAEAQTGTGKTLAFLLPIFENISPNINSTQALIVT 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  +   I +    G      + K L+R      H+II T     D
Sbjct: 77  PTRELAIQITEEALKLKKAKDINILAAYGGKDIGSQLKKLKR----NIHLIIATPGRLLD 132

Query: 389 SI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            +        +   L+L   D+    G +  ++           +   +   +TL  ++ 
Sbjct: 133 HLHRKTIDLSKLKTLVLDEADQMLLMGFKNDVEDI---------IKEVSKKRQTLCFSAT 183

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---KE 497
            + D+ K+  +     P+   I         I++  +  ++ KK   +C  I++      
Sbjct: 184 MNSDVKKLAYRYMT-DPLVVSIKKEKVTLNNIKQYVIETTDRKKQDALCNIIDQDNPFMA 242

Query: 498 SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F     R + L             +H  +    +E +M SF+N   + LIAT V   G
Sbjct: 243 IIFCRTKRRVDDLEIALYQRGYNCKKLHSDIPQSKRERIMKSFRNADIQYLIATDVAARG 302

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+   + I   +      + +H++ GR GR  E     L   P   +        +K  
Sbjct: 303 LDISGVTHIYNYDIPENVESYIHRI-GRTGRAGEEGCTCLFVDPKDKRTLEEIERGIK-- 359

Query: 615 EDGFLIAEEDLKQ 627
              F I   +L  
Sbjct: 360 ---FRIPRRELNI 369


>gi|238021260|ref|ZP_04601686.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
 gi|237868240|gb|EEP69246.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
          Length = 449

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 66/360 (18%), Positives = 124/360 (34%), Gaps = 39/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------EAGGQA 324
            PT  Q  +I   L +         +     GSGKT   L+     +         G + 
Sbjct: 25  EPTPIQAQSIPAALANQD------IMASAQTGSGKTAAFLLPSLQKIIKRSEQPGKGPRV 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LAQQ  +  + Y QN   +    + G      + KAL R       I++ T 
Sbjct: 79  LVLTPTRELAQQVEKNAQLYAQNMKWVRTVTLVGGSSFGQQIKALSRP----IDIVVATP 134

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVL 437
               D      I + +L ++++DE  R      +   +        ++ A P   +TL+ 
Sbjct: 135 GRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIET-------IVAAMPESRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    I       ++ E+L        K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKNPEVIEIERAEAQGKIEEQLLYCDDRNHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTATKAMTETLADELYEKGFAANCLHGDMPQGWRNRTLMDVRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV   + +I  +        +H++ GR GR       +           +     +
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAVSFADAKEYMMVHKIERYI 365


>gi|168185001|ref|ZP_02619665.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|237795441|ref|YP_002862993.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum Ba4 str. 657]
 gi|182671947|gb|EDT83908.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|229262402|gb|ACQ53435.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
          Length = 376

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 127/369 (34%), Gaps = 39/369 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE +I  I            I +   G+GKTL  L+ M   +       Q +I+ 
Sbjct: 24  EPTPIQEESIMLIKSG------NDVIAEAQTGTGKTLAFLLPMFENISPDIDAIQGLIIT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  +   + +    G      + K L        H++I T     D
Sbjct: 78  PTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKL----KNNIHLVIATPGRLLD 133

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPRT--LV 436
            +            L+L   DE    G +   R  +         L  +AT       L 
Sbjct: 134 HLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATMNSEVKKLA 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
             ++ D  +  I ++    K IK V+I      +  +  K++  E      I  +     
Sbjct: 194 YKNMRDPKLIIIEKEEVTLKNIKQVLIETTDRRKQEDLCKILDEENPFMAIIFCRT---- 249

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+           +   +HG ++   +E +M SFKN   + LIAT V   G+D
Sbjct: 250 ----KRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + +   +      + +H++ GR GR  E     L   P   +        +K    
Sbjct: 306 ITGVTHVFNYDIPENAESYIHRI-GRTGRAGEKGYTFLFVAPKDEQTLGMIEREIK---- 360

Query: 617 GFLIAEEDL 625
            F I  + L
Sbjct: 361 -FKIPRKTL 368


>gi|27463689|gb|AAO15914.1|AF510054_1 vasa-like [Schistocerca gregaria]
          Length = 588

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/385 (16%), Positives = 137/385 (35%), Gaps = 52/385 (13%)

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            Q + +     PT  Q+ AI  I            +     GSGKT   L+ +   +   
Sbjct: 179 LQNVKKCGYTKPTPVQKYAIPIIAGGRD------LMACAQTGSGKTAAFLLPIINTILND 232

Query: 322 GQ------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            +            AVI++P   LA Q +   +K+   + +   ++ G     H+ + + 
Sbjct: 233 PRELVMTGQGCEPHAVILSPTRELALQIFNEARKFALGSIVKSVVVYGGTSTMHQAQQVA 292

Query: 370 RIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           R      HI++ T     D      + +  +  V++DE  R      L   +K       
Sbjct: 293 R----GCHILVATPGRLMDFLNRGRVNFQSVRFVVLDEADRMLDMGFLPDVEKMLEHPT- 347

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKP-------------AGRKPIKTVIIPINRIDEV 471
            M  T   +T+++++    +I ++  K                   ++ +   +++ D+ 
Sbjct: 348 -MVPTGERQTVMVSATFPEEIQRLATKFLSNYLFLAVGIVGGACSDVEQIFYKVSKFDKR 406

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
            +  +++  EG K   +            + + +   +           IHG      +E
Sbjct: 407 AKLTEILREEGGKKVLVFV--------ETKRIADFLAAFLCEQKFPTTSIHGDRLQSQRE 458

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             +  FK+G   +L+AT V   G+D+ + + +I  +        +H++ GR GR      
Sbjct: 459 EALYDFKSGRMGILVATAVAARGLDIKNVAHVINYDLPKSIDEYVHRI-GRTGRVGNRGR 517

Query: 592 CILLYHPPLSKN-SYTRLSVLKNTE 615
               Y P +    +   + +L+   
Sbjct: 518 ATSFYDPDVDAPIARDLVKILQQAN 542


>gi|257885750|ref|ZP_05665403.1| helicase [Enterococcus faecium 1,231,501]
 gi|257821606|gb|EEV48736.1| helicase [Enterococcus faecium 1,231,501]
          Length = 503

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 35/346 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  Q   I   L           I Q   G+GKT    + M   ++      Q +
Sbjct: 20  GFEEATPIQSETIPLALAGKDV------IGQAQTGTGKTAAFGLPMLEKIDPDRHELQGL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E + +  ++ ++ V+ + G      + + L+     + HI++GT   
Sbjct: 74  VIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLKD----RPHIVVGTPGR 129

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--R 433
             D I  + L L  V        DE    G  + +   ++Q       LL +AT  P  +
Sbjct: 130 MLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQRQTLLFSATMPPAIK 189

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + +  + +    KI  K      I    +     ++     ++   +  +   +  +  
Sbjct: 190 NIGVKFMKNPHHVKIKAKEVTADLIDQYYVRAKEYEKFDIMTRLFDVQTPELTIVFGRT- 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+      E        IHG +S   + SV+ SFK+G   +L+AT V   
Sbjct: 249 -------KRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAAR 301

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKGGMSVTFVTPN 346


>gi|291165171|gb|ADD81190.1| vasa [Scomber australasicus]
          Length = 645

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 127/357 (35%), Gaps = 48/357 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 230 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQQLMADGVAASRFSEL 283

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K+   T +   ++ G +   H+ + +ER  +    I+
Sbjct: 284 QEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIRDIERGCN----IV 339

Query: 380 IGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKL------TQKATAPHVLL 425
            GT     D I        +   L+L   D     G +  ++                L+
Sbjct: 340 CGTPGRLLDMIGRGKVGVSKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLM 399

Query: 426 MTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            +AT    I R        D     +         ++   I + +  +  + L ++ + G
Sbjct: 400 FSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTTG 459

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            +   +  + + + +     + +               IHG     ++E  +  F++G C
Sbjct: 460 MERTMVFVETKRQADFIATFLCQE--------KVPTTSIHGDREQREREQALADFRSGKC 511

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            +++AT+V   G+D+ D   ++  +  +     +H++ GR GR       +  Y P 
Sbjct: 512 PVMVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFYDPD 567


>gi|126461963|ref|YP_001043077.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103627|gb|ABN76305.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 516

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 145/390 (37%), Gaps = 54/390 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+          +     G+GKT    + M   +  G       +++
Sbjct: 24  TPTPIQAQAIPHALEGKDV------LGIAQTGTGKTASFTLPMITILGKGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y +++++   ++ G +    + K ++R       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDR----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     ++VDE  R      +   ++       + + TP   +TL  ++
Sbjct: 134 LLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIER-------IFSLTPFTRQTLFYSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-------KVVLSEGKKAYWICPQI 492
               +I +IT        +K  +       E IE+        +   S   K   +   I
Sbjct: 187 TMAPEIERITNTFLTG-AVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRALI 245

Query: 493 EEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             + E         N +  V+      +    + + IHG +    +   +D F++G+  L
Sbjct: 246 RAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSLHL 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+A+ V   G+D+   S +   +        +H++ GR GR         +  P   K+ 
Sbjct: 306 LVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRI-GRTGRAGRKGKAYTIAVPSDEKHV 364

Query: 605 YTRLSVLK------NTEDGFLIAEEDLKQR 628
               S++K         +GF +  ED   R
Sbjct: 365 TAIESLVKQAIPRGELPEGFSL--EDRPDR 392


>gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-23m63]
 gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
 gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
 gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
 gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
          Length = 537

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 133/379 (35%), Gaps = 43/379 (11%)

Query: 257 VEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
              +  +K +  + F  P+  Q  +I  IL           I Q   G+GKT    I + 
Sbjct: 10  PISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDV------IGQAQTGTGKTAAFSIPIL 63

Query: 316 AAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERI 371
             ++      QAV++ P   LA Q    I+K  +    I    I G  P   + K+L+  
Sbjct: 64  ETIDPNNRSLQAVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQIKSLKS- 122

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHV 423
                 ++IGT     D I    L +  V        DE    G ++ +++         
Sbjct: 123 ---GVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMI-------- 171

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            L       +T   ++     I ++T++   + P    ++         ++  +      
Sbjct: 172 -LSKIPEERQTTFFSATMPRGILELTKRY-QKDPEHIKVVRKELTVSNTKQYYIETRSSN 229

Query: 484 KAYWICPQIEEKKES---NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
           K   +C  ++         F +   + + L     +       +HG +    ++ VMD F
Sbjct: 230 KLEVLCRLVDVYDPKLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKF 289

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +NGT  +L+AT V   GIDV D   +   +        +H++ GR GR            
Sbjct: 290 RNGTIDILVATDVAARGIDVDDVECVFNYDLPQDEEYYVHRI-GRTGRAGREGMSFTFV- 347

Query: 598 PPLSKNSYTRLSVLKNTED 616
               K       + + T+ 
Sbjct: 348 --FGKEMRKMKDIERYTKS 364


>gi|257867061|ref|ZP_05646714.1| helicase [Enterococcus casseliflavus EC30]
 gi|257873396|ref|ZP_05653049.1| helicase [Enterococcus casseliflavus EC10]
 gi|257877139|ref|ZP_05656792.1| helicase [Enterococcus casseliflavus EC20]
 gi|257801117|gb|EEV30047.1| helicase [Enterococcus casseliflavus EC30]
 gi|257807560|gb|EEV36382.1| helicase [Enterococcus casseliflavus EC10]
 gi|257811305|gb|EEV40125.1| helicase [Enterococcus casseliflavus EC20]
          Length = 507

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 89/441 (20%), Positives = 166/441 (37%), Gaps = 47/441 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  QE+ I   L           I Q   G+GKT    + M   ++      Q +
Sbjct: 20  GFEEATPIQEATIPLALAGKDV------IGQAQTGTGKTAAFGLPMLEKIDPTNHQLQGL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E + +  ++ +I V+ + G      + + L+     + HI++GT   
Sbjct: 74  VIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLKD----RPHIVVGTPGR 129

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--R 433
             D I  + L L  V        DE    G  + +   ++Q       LL +AT  P  +
Sbjct: 130 MLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDVRQTLLFSATMPPAIK 189

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + +  + + +  +I  K      I    +     ++     +++  +  +   +  +  
Sbjct: 190 NIGVKFMKEPEHVQIKAKEMTADLIDQYYVRSKDYEKFDIMTRLLDVQTPELTIVFGRT- 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+      E        IHG +S   + SV+ SFK+G   +L+AT V   
Sbjct: 249 -------KRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILVATDVAAR 301

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   + +   +      + +H++ GR GR  +    +    P      +   ++ K 
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKGGMSVTFVTPNEMSYLHVIENLTKK 360

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH----DSLLEI--ARKDAKHIL 667
                    E  K+  +G++    +S   K      + +    D LLE   A+  A  +L
Sbjct: 361 RMTPMRPPTE--KEAFKGQLGAAIESVETKLDENGLDKYLQAADDLLERYSAQDLAALLL 418

Query: 668 ---TQDP-DLTSVRGQSIRIL 684
               +DP DL  V+    R L
Sbjct: 419 KTMAKDPADLAPVKITPERPL 439


>gi|229196679|ref|ZP_04323422.1| ATP-dependent RNA helicase [Bacillus cereus m1293]
 gi|228586754|gb|EEK44829.1| ATP-dependent RNA helicase [Bacillus cereus m1293]
          Length = 451

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 26  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPT 79

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 80  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 135

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 136 IRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 194

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +         IE+  +  ++  K     ++  + +      F     R
Sbjct: 195 KRYMD-EPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 253

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 254 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 313

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 314 FNYDIPEDVESYIHRI-GRTGRAGGSGIAITFVAAKDEKHLEEIEKTL 360


>gi|150016695|ref|YP_001308949.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903160|gb|ABR33993.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 480

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/376 (21%), Positives = 146/376 (38%), Gaps = 40/376 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + +  P+K QE  I +IL +         I++   GSGKT    I +   V+     
Sbjct: 18  IEGLGYKNPSKVQEKVIPEILLNKD------IIVKSQTGSGKTAAFGIPLCEKVDWNENI 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++ P   LA Q  E I    +  +I    I G  P + + + L++    + H+++G
Sbjct: 72  PQILVLTPTRELAVQVSEDITNIGRFKRIKSVSIFGKEPISEQERKLKQ----KTHVVVG 127

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQ-QRLKLTQKATAPHVLLMTATPIP 432
           T     D I    L L  +        DE    G   Q   + ++     V ++ +  IP
Sbjct: 128 TPGRILDHIDRGSLNLAQIKYFVIDEADEMLNMGFIGQVEGIIRRLPKKKVTMLFSATIP 187

Query: 433 ---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              + L    +       I  +    + I   +   N  +++ +   ++++E  +   I 
Sbjct: 188 EEIKVLCDKYMNKPVDISINNQKLINENIDHNLYYTNYEEKIEKLNDILITEKPETVVIF 247

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E         V+      +    S+  IHG M   ++ S+MD F+ G  ++L++T 
Sbjct: 248 AKTKEN--------VDTVFQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFRILVSTD 299

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   GIDV   + +I  +      A +H++ GR GR  E    I        K       
Sbjct: 300 LASRGIDVKGITHVINYDLPVEKEAYVHRI-GRTGRAGEKGKAISFCVNEKDKLLSEIEE 358

Query: 610 VLKNTEDGFLIAEEDL 625
            +     GF I   +L
Sbjct: 359 FI-----GFKIPVYNL 369


>gi|312375424|gb|EFR22803.1| hypothetical protein AND_14200 [Anopheles darlingi]
          Length = 971

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/452 (19%), Positives = 167/452 (36%), Gaps = 47/452 (10%)

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           + L  K    ++ +       P   KDF    P     + +E+   + +  +        
Sbjct: 205 QSLKAKYPGQNLMKPMWENLEP-FQKDFYVPHPNVMARSDEEVQVFRESTQVTVMGNNVP 263

Query: 251 IGIPINVEGKIAQKILRNI---PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
                  EG   + ++  I    F  PT  Q       L        M+ I Q   GSGK
Sbjct: 264 HPCQSFEEGNFPEYVMNEIKKQGFPRPTAIQSQGWPIAL----SGRDMVGIAQ--TGSGK 317

Query: 307 TLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIIT 356
           TL  ++     +          G   +++AP   LAQQ    ++++  +++  I    I 
Sbjct: 318 TLAYMLPGLVHISHQKPLTRGDGPIVLVLAPTRELAQQIQTVVREFGNHSKPNIRYTCIF 377

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGV 408
           G   +  + + LER       ++I T     D ++           L+L   D     G 
Sbjct: 378 GGALKGPQVRDLER----GVEVVIATPGRLIDFLERGITNLHRCTYLVLDEADRMLDMGF 433

Query: 409 QQRLKLT--QKATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           + +++    Q      VL+ +AT     +TL    L D     I             I+ 
Sbjct: 434 EPQIRKIVEQIRPDRQVLMWSATWPKEVQTLAEDFLRDYIQINIGSLSLAANHNIHQIVD 493

Query: 465 I---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
           +   N  +  + +L   ++    +  I   +E KK+ +     +   ++      + +I 
Sbjct: 494 VCEENEKESKLLKLLKEIASTDASNKIIIFVETKKKVD-----DLLKNIVRDGYGATSI- 547

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG  S  +++ V+  F++G   +L+AT V   G+DV D   +I  +  +     +H++ G
Sbjct: 548 HGDKSQSERDYVLQDFRHGKSTILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRI-G 606

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           R GR  +  +    + P   + +   LSVL+ 
Sbjct: 607 RTGRCSQYGTAYSFFTPNNGRQARELLSVLEE 638


>gi|193212728|ref|YP_001998681.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum
           parvum NCIB 8327]
 gi|193086205|gb|ACF11481.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB
           8327]
          Length = 427

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 130/362 (35%), Gaps = 37/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           SPT  Q  AI  +L+          +     G+GKT    + +   +            +
Sbjct: 23  SPTPIQAEAIPLLLEGHD------LLGCAQTGTGKTAAFALPILQLLHQDQEHGRKRKIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA Q  E  + Y ++T +   +I G + Q  + + L     G   I++ T 
Sbjct: 77  CLVLTPTRELALQIGESFEAYGRHTGLKSTVIFGGVNQNPQTRTLA----GGVDILVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D      +    +   ++DE  R      +   +K      +L       ++L  +
Sbjct: 133 GRLLDLMGQEHLHLRDIEYFVLDEADRMLDMGFIHDVKK------VLAALPKKKQSLFFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-- 496
           +     I  +       +P K  + P++   E+I +  + +    K   +   ++ +   
Sbjct: 187 ATMPPAIVNLAAS-ILHQPKKVTVTPVSSTAEIINQHILFVDRENKNSLLEHLLQNRDIS 245

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  +   ++              IHG  S   ++  + +FK+G  ++L+AT +  
Sbjct: 246 SVLAFTRTKHGADKVAKFLTRKNIKAEAIHGNKSQNARQRALGNFKSGETRVLVATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GIDV D   +I  +  +     +H++ GR GR     +     +    +       ++ 
Sbjct: 306 RGIDVDDLEYVINIDLPNVAETYVHRI-GRTGRAGNRGTAYSFCNAEEKEYLRDIEKLID 364

Query: 613 NT 614
            +
Sbjct: 365 KS 366


>gi|126698341|ref|YP_001087238.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-66c26]
 gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
           107932]
 gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-63q42]
 gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
           43255]
 gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-76w55]
 gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-97b34]
 gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-37x79]
 gi|260682458|ref|YP_003213743.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260686057|ref|YP_003217190.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-32g58]
 gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile]
 gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 537

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 133/379 (35%), Gaps = 43/379 (11%)

Query: 257 VEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
              +  +K +  + F  P+  Q  +I  IL           I Q   G+GKT    I + 
Sbjct: 10  PISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDV------IGQAQTGTGKTAAFSIPIL 63

Query: 316 AAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERI 371
             ++      QAV++ P   LA Q    I+K  +    I    I G  P   + K+L+  
Sbjct: 64  ETIDPNNRSLQAVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQIKSLKS- 122

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHV 423
                 ++IGT     D I    L +  V        DE    G ++ +++         
Sbjct: 123 ---GVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMI-------- 171

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            L       +T   ++     I ++T++   + P    ++         ++  +      
Sbjct: 172 -LSKIPEERQTTFFSATMPRGILELTKRY-QKDPEHIKVVRKELTVSNTKQYYIETRSSN 229

Query: 484 KAYWICPQIEEKKES---NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
           K   +C  ++         F +   + + L     +       +HG +    ++ VMD F
Sbjct: 230 KLEVLCRLVDVYDPKLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKF 289

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +NGT  +L+AT V   GIDV D   +   +        +H++ GR GR            
Sbjct: 290 RNGTIDILVATDVAARGIDVDDVECVFNYDLPQDEEYYVHRI-GRTGRAGREGMSFTFV- 347

Query: 598 PPLSKNSYTRLSVLKNTED 616
               K       + + T+ 
Sbjct: 348 --FGKEMRKMKDIERYTKS 364


>gi|317008898|gb|ADU79478.1| ATP-dependent RNA helicase [Helicobacter pylori India7]
          Length = 492

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ + + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|297379472|gb|ADI34359.1| ATP-dependent RNA helicase [Helicobacter pylori v225d]
          Length = 492

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 128/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+   + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRVSIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|218261592|ref|ZP_03476346.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223947|gb|EEC96597.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii
           DSM 18315]
          Length = 419

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 128/345 (37%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q  AI  +L           +     G+GKT    I +   +E         G +
Sbjct: 23  TPTPIQAEAIPLVLDG------SDLLGCAQTGTGKTAAFSIPIIQKIEEQISSRCKPGIK 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA Q  E    Y   T +   +I G + Q  +  ALER       ++I T 
Sbjct: 77  ALVLTPTRELAIQIGESFTAYGCYTHVKHTVIFGGVGQKPQTDALER----GVDVLIATP 132

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D      I+   L   ++DE  R      +   +       +L       ++L  +
Sbjct: 133 GRLLDLLSQGFIRLDTLEYFVLDEADRMLDMGFIHDIK------RILPLLPKKRQSLFFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-- 496
           +    +I ++       +P K  + P++   + I++    + + +K   +   +E++   
Sbjct: 187 ATMPPEIERLAGT-ILHEPEKVEVTPVSSTVDTIDQSVYFVEKVEKINLLKNLLEDRSLE 245

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  +   ++   +          IHG      ++  + SFK+ T ++LIAT +  
Sbjct: 246 SVLVFTRTKYGADKVARVLNKSGIGAEAIHGDKGQNARQRALSSFKDHTLRVLIATDIAS 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            GIDV   S +I  +  +     +H++ GR GR            
Sbjct: 306 RGIDVDHLSHVINYDLPNVPETYVHRI-GRTGRAGRSGIAFSFCD 349


>gi|229917498|ref|YP_002886144.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
 gi|229468927|gb|ACQ70699.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
          Length = 481

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 37/367 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           SPT+ Q+  I   L+      R   +++   GSGKT    I +   +   E   Q +++ 
Sbjct: 26  SPTEVQQQVIPRALE------REDLVVKAQTGSGKTAAFGIPVIELIDWAENKPQVLVLT 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E +    +  +I    + G  P + +R+ L++    + HI++GT     D
Sbjct: 80  PTRELAVQVREDMTNIGRFKRIKATAVYGKEPFSKQREELKQ----KTHIVVGTPGRVMD 135

Query: 389 SIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            I+   L L      I+DE      +  L   +K      +L        T+V ++    
Sbjct: 136 HIERETLSLDRIEYLIIDEADEMLNRGFLADVEK------ILQQLPKDRVTMVFSATFPQ 189

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--CPQIEEKKESNF- 500
           DI ++ +K     P +  I         IE   + +   +K   +     +E        
Sbjct: 190 DIERLCQKHMN-APARVAIESTGMTASTIEHRLLPVHRNEKLAVLQDITVVENPDSCMIF 248

Query: 501 ---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +  V+   +  +    S   +HG +   D+ +VM+ FK G  + L+AT V   GIDV
Sbjct: 249 CRTKENVDTVYAELDKAGYSAERLHGGLEQEDRFAVMNGFKMGNFRYLVATDVAARGIDV 308

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            +  ++I  +      + +H+  GR GR  +  + I L    +++     +  +++    
Sbjct: 309 DNVELVINYDVPVEKESYVHR-TGRTGRAGKQGTAITL----MTRQEERLIGAIESYVQ- 362

Query: 618 FLIAEED 624
           F I   D
Sbjct: 363 FEIPMID 369


>gi|16803286|ref|NP_464771.1| hypothetical protein lmo1246 [Listeria monocytogenes EGD-e]
 gi|224499083|ref|ZP_03667432.1| hypothetical protein LmonF1_05030 [Listeria monocytogenes Finland
           1988]
 gi|224501811|ref|ZP_03670118.1| hypothetical protein LmonFR_04752 [Listeria monocytogenes FSL
           R2-561]
 gi|284801628|ref|YP_003413493.1| hypothetical protein LM5578_1381 [Listeria monocytogenes 08-5578]
 gi|284994770|ref|YP_003416538.1| hypothetical protein LM5923_1334 [Listeria monocytogenes 08-5923]
 gi|16410662|emb|CAC99324.1| lmo1246 [Listeria monocytogenes EGD-e]
 gi|284057190|gb|ADB68131.1| hypothetical protein LM5578_1381 [Listeria monocytogenes 08-5578]
 gi|284060237|gb|ADB71176.1| hypothetical protein LM5923_1334 [Listeria monocytogenes 08-5923]
          Length = 470

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 137/370 (37%), Gaps = 38/370 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  ++ +  + ++  T  Q++ I   L           + +   GSGKT    I +A  
Sbjct: 7   SEEIKRAINELGYTEATPVQKAVIPVALTGED------IVAKSQTGSGKTAAFAIPIAEQ 60

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+I+ P   LA Q         +  ++    I G  P A ++  L +    
Sbjct: 61  VEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKN-- 118

Query: 375 QAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
             HI++GT     D I+           L+L  VDE    G   ++   L++       L
Sbjct: 119 --HIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNL 176

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             +AT       L      +   I        PI  V +  +  ++ ++   V+++E   
Sbjct: 177 FFSATMPEEMQDLIKRYQDNPMVIEMASEKTNPIFHVEMQTDNKEKTLKD--VLITENPD 234

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +  I    + +            + L +      + IHG +   D+   MD FK+G  + 
Sbjct: 235 SAIIFCNTKNQ-----------VDELTDLLDVKASKIHGGLRQEDRFRAMDDFKSGKSRF 283

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   GIDV + S++I  +        +H++ GR GR  +    I       +   
Sbjct: 284 LIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRI-GRTGRAGKSGKAISFVKTNENPLL 342

Query: 605 YTRLSVLKNT 614
                +L  T
Sbjct: 343 RDIEEMLDVT 352


>gi|328706401|ref|XP_001950362.2| PREDICTED: putative ATP-dependent RNA helicase Pl10-like
           [Acyrthosiphon pisum]
          Length = 681

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 137/381 (35%), Gaps = 54/381 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +PT  Q+ AI  I+       R   +     GSGKT   L+ +   +   G A       
Sbjct: 217 TPTPVQKYAIPIIV------GRRDVMACAQTGSGKTAAFLVPILNQIYEKGPAAYNVGPK 270

Query: 325 ----------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                     +I+AP   LA Q Y+  KK+   +++   ++ G      + + LE+    
Sbjct: 271 LQSRRKYPLGLILAPTRELATQIYDEAKKFAYRSRVRPCVVYGGSHVMDQIRDLEQ---- 326

Query: 375 QAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT-----QKATAP 421
             H+++ T     D ++  K        L+L   D     G + +++             
Sbjct: 327 GCHLLVATPGRLVDMLERGKIGLDFCRYLVLDEADRMLDMGFETQIRRIVEKDSMPPPGD 386

Query: 422 HVLLMTATPIPRTLVLTSLGDID------ISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
              LM +   P+ + + +   +D      I ++             +   N+   +++ L
Sbjct: 387 RQTLMFSATFPKEIQMLARDFLDNYIFLAIGRVGSTSENITQKIVWVEDRNKRSYLLDLL 446

Query: 476 KVVLSEGKKAY-WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
                  K A   I   +E KK        +            +  IHG  +  ++E  +
Sbjct: 447 NATPIRSKPAESLILVFVETKK------GADSLEEFLYSNGYPVTSIHGDRTQREREDAL 500

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            SF++G   +L+AT V   G+D+   + +I  +        +H++ GR GR   +     
Sbjct: 501 KSFRSGNTPVLVATAVAARGLDIPHVTHVINYDLPSDVEEYVHRI-GRTGRMGNLGLATS 559

Query: 595 LYHPPLSKNSYTRLSVLKNTE 615
            ++      +   + ++  ++
Sbjct: 560 FFNDKNRNLTRDLMELITESK 580


>gi|254195234|ref|ZP_04901662.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei S13]
 gi|169651981|gb|EDS84674.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei S13]
          Length = 465

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 84/461 (18%), Positives = 168/461 (36%), Gaps = 62/461 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I Q   GSGKT    +A+ A ++     
Sbjct: 23  LAQLGYTDMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDTRRFD 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    + V  + G  P   + ++LE      AHII+
Sbjct: 77  VQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIIV 132

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 133 GTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQ------CPPTRQTL 186

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   +   
Sbjct: 187 LFSATYPDGIAKLSQQFLRHP--KRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHY 244

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 245 RPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 305 VAARGLDIAQLEAVINVDVTPDPEVYVHRI-GRTGRADQDGWALSLASMNEMGRVGGIEQ 363

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILGIKQSGMPKFLIAQP 649
            L    +   +A              E L+           G++LG   +G   F  AQ 
Sbjct: 364 ALAREVEWHPLAELKAGGDAPLLPPMETLQILGGRKDKIRPGDVLGAL-TGDAGFSGAQI 422

Query: 650 -----ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                    + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 423 GKINVTEFSTYVAVERGIARDALRKL-NAGKIKGKRVKVRL 462


>gi|255034017|ref|YP_003084638.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254946773|gb|ACT91473.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 590

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 157/416 (37%), Gaps = 49/416 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L+ + F  P+  Q   I  +LQ          I Q   G+GKT    I +   ++     
Sbjct: 22  LQEMGFEKPSPIQAQGIPAVLQG------SDVIGQAQTGTGKTAAFGIPVLERIDTSSNA 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+ P   LA Q  E + + ++    + +E I G      + ++L++      HI++
Sbjct: 76  VQALILCPTRELAVQVSEELGRLSKFMRGVRIEAIYGGDSIDRQIRSLKK----GVHIVV 131

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE    G ++ +   L         +L +AT 
Sbjct: 132 GTPGRVMDHMERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPEDRQTILFSATM 191

Query: 431 IPRTLVLT--SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               + +T   L D  + K+       + I+ V   +    +V    +++     K+  +
Sbjct: 192 SKPIMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVKPQAKVEVMTRLIDMHHIKSLLV 251

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    +  R V E    L     +S  I HG +    + +VM  FK G   +L+AT
Sbjct: 252 F-------CNTKRKVDEIVEDLQLRGYASEGI-HGDLRQQQRSNVMSKFKAGVTTILVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV     +I  +        +H++ GR GR         L        +    
Sbjct: 304 DVAARGIDVSGLDGVINYDIPMDEEYYVHRI-GRTGRAGMSGKAFSLV-------ARDEK 355

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP------ELHDSLLEI 658
             LK+ E    +  E        +I+G++++   + +          EL++ +LE+
Sbjct: 356 YRLKSIESYTKVKIEKGVIPSFEDIVGVRKARFVENISNSIKESNDEELYNDVLEM 411


>gi|157826077|ref|YP_001493797.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford]
 gi|157800035|gb|ABV75289.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford]
          Length = 410

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 135/342 (39%), Gaps = 35/342 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQAVIMAPI 330
            PT+ Q+ +I   +           +     GSGKTL  L+ +  + ++    A+I+ P 
Sbjct: 21  EPTEIQKQSIPVAMAG------SDILASSQTGSGKTLAYLLPLIDSFIKNKTTALILVPT 74

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q +  + K T + ++   ++ G  P   +   L++        IIGT     D +
Sbjct: 75  RELATQIHSTLNKVTTSYKMNSAVLIGGEPMHKQFMQLKKNPKA----IIGTPGRIIDHL 130

Query: 391 QYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               L        +L  +D     G++++L+   K               + L+ ++   
Sbjct: 131 NRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEK---------RQVLMFSATMP 181

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----E 497
             I  +++K     P++  +   N+    I++  + +S+ +K   +  Q+  ++      
Sbjct: 182 KHIIVVSQKYLN-NPVRITVGAANKAAAEIKQESIHVSDKEKFSELTKQLGNREGSVIIF 240

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++   + ++       IHG +S   +E V+ SF+    ++++AT V   G+D+
Sbjct: 241 VKTKRSADQLAKMLKYENHKAEAIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDI 300

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
                +I  +        LH++ GR GR       +    P 
Sbjct: 301 PHTQHVINYDLPMCPEDYLHRI-GRTGRAGATGHALSFISPD 341


>gi|227503818|ref|ZP_03933867.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
 gi|227199642|gb|EEI79690.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
          Length = 678

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 83/407 (20%), Positives = 154/407 (37%), Gaps = 50/407 (12%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +  Q+ +  + F+ P+  QE  I  +++          +     G+GKT    + + + V
Sbjct: 63  EEVQQAVAKVGFTQPSPIQEQTIPILMEGRDV------VGLAQTGTGKTAAFALPVLSQV 116

Query: 319 E---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHG 374
           +      QA+++AP   LA Q  +  + +  +   I V  I G      +   L R    
Sbjct: 117 DPEVRHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRR---- 172

Query: 375 QAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            A II+GT     D +        Q   L+L   DE    G Q+ ++   +         
Sbjct: 173 GAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILED-------- 224

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
             TP  + + L S    +  +   K     P +  +    R ++ I   + +L+  ++  
Sbjct: 225 --TPEEKQVALFSATMPNSIRRLSKQYLNDPAEVTVKSERRTNDNI-TQRYLLTPHRQKM 281

Query: 487 WICPQIEEKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
               +I E  E +        +   E           + A I+G ++   +E  +D  K+
Sbjct: 282 DAFTRILEVIEYDAIIVFCRTKHETEEVADSLRDAGYNAAAINGDIAQQQRERTVDQLKD 341

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+DV   + ++  +  +   + +H++ GR GR       IL   P 
Sbjct: 342 GRLDILVATDVAARGLDVDRITHVVNYDIPNDTESYVHRI-GRTGRAGRTGEAILFVTPR 400

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEED--LKQRKE------GEILGIKQ 638
             +   +   V     +   +   D   ++RKE      GE LG KQ
Sbjct: 401 ERRMLRSIERVTNARLEEMDLPSADAVNEKRKEKFLAKIGESLGDKQ 447


>gi|108562675|ref|YP_626991.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1]
 gi|217031464|ref|ZP_03436969.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128]
 gi|298736807|ref|YP_003729337.1| putative helicase [Helicobacter pylori B8]
 gi|107836448|gb|ABF84317.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1]
 gi|216946664|gb|EEC25260.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128]
 gi|298356001|emb|CBI66873.1| putative helicase [Helicobacter pylori B8]
          Length = 492

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ + + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|78042906|ref|YP_359101.1| DEAD-box ATP dependent DNA helicase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995021|gb|ABB13920.1| ATP-dependent RNA helicase, DEAD box family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 430

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/363 (22%), Positives = 143/363 (39%), Gaps = 40/363 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--Q 323
            ++ F  PT  Q+ AI  IL+          + Q   G+GKT   L+ +   ++ G   Q
Sbjct: 18  NDLGFEMPTPIQKEAIPLILEG------HNLVGQAPTGTGKTAAYLLPVLQRIQRGKKAQ 71

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   LA Q  + + K  +  ++    + G      + + L +       +I+GT 
Sbjct: 72  VLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQ----GVEVIVGTP 127

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PIP 432
               D I        +   +IL   DE    G    +   L         LL +AT P P
Sbjct: 128 GRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAP 187

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE-GKKAYWICP 490
            +T++   LG     K+  +      I+ V   +   +++   + ++ SE   +A   C 
Sbjct: 188 IKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSELPIQAIVFCR 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     + V E    L+    ++  + HG MS  ++   + SFK G  +LL+AT V
Sbjct: 248 T--------KKRVDEVVEQLNFRGYAAKGL-HGDMSQRERTQTIKSFKAGKTELLVATDV 298

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D S +I  +      + +H++ GR GR       I L    ++      L  
Sbjct: 299 AARGLDIPDVSHVINFDIPQNPESYIHRI-GRTGRAGREGKAITL----INYRERKLLKA 353

Query: 611 LKN 613
           ++ 
Sbjct: 354 IEE 356


>gi|218903612|ref|YP_002451446.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|218537452|gb|ACK89850.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
          Length = 450

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +         IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|66046848|ref|YP_236689.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|302187695|ref|ZP_07264368.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae 642]
 gi|63257555|gb|AAY38651.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330972316|gb|EGH72382.1| helicase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 557

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 142/373 (38%), Gaps = 46/373 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ +I  IL           I Q   G+GKT    + +   ++      QA+I+A
Sbjct: 28  EPSAIQQQSIPIILAGHD------MIGQAQTGTGKTAAFALPILHRIDPSKREPQALILA 81

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y  Q   + V  + G  P   + KA+       A I++ T     
Sbjct: 82  PTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN----GAQIVVATPGRLC 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLT 438
           D ++           L+L   DE  + G    L+          ++  A P   +T++ +
Sbjct: 138 DHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLE----------VIFKAMPETRQTVLFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I  I E+   R P    I    +    IE+  +++   +K   +   +E +   
Sbjct: 188 ATLPQSIRAIAERHL-RDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFD 246

Query: 499 NFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                V          S  E      A ++G ++   +E V++S K+G   +++AT V  
Sbjct: 247 ALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   + +   +  +   + +H++ GR GR       +LL  P         L V++
Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGREGRALLLVTPRE----RRMLQVIE 361

Query: 613 NTEDGFLIAEEDL 625
               G  +AE  L
Sbjct: 362 RVT-GQKVAEVRL 373


>gi|300772766|ref|ZP_07082636.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761069|gb|EFK57895.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 435

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 133/346 (38%), Gaps = 37/346 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QA 324
           PT  QE AI  I Q      R   +     G+GKT    I +   +            + 
Sbjct: 41  PTPIQEQAIPIIFQ------RKDLLACAQTGTGKTAAFAIPILQMLTYSKEKTAQKRIRT 94

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E    Y++   I   +I G + Q  +R AL +       I+I T  
Sbjct: 95  LVLTPTRELAIQIKENFDAYSKELPIRNLVIYGGVGQQPQRDALRK----GIDILIATPG 150

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I   +L   ++DE  R      +   +K      ++       +TL+ ++
Sbjct: 151 RLLDLYNQGFIDLKQLEYFVLDEADRMLDMGFIHDVKK------VISIIPKKRQTLLFSA 204

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I K+        P K  + P +   E I++    +S+  K + +   ++ +   +
Sbjct: 205 TMPAEIQKLAS-HILEDPSKVEVTPESTTAEKIQQSVYFVSKSDKRHLLTHLLKSENIEH 263

Query: 500 F------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   +R            A IHG  S   +++ +++FK+   ++L+AT +   
Sbjct: 264 TLVFSRTKHGADRIAKDLAKQGIQAAAIHGNKSQSARQNALNNFKDRKLRVLVATDIAAR 323

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GID+ D S +I  +  +   + +H++ GR GR  +    I      
Sbjct: 324 GIDIDDLSYVINFDLPNIPESYVHRI-GRTGRAGKDGKAISFCDDE 368


>gi|301301069|ref|ZP_07207229.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851339|gb|EFK79063.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 492

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 132/371 (35%), Gaps = 34/371 (9%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAV 325
            F   T  Q   I  +L           I Q   G+GKT    + +   ++      QAV
Sbjct: 20  GFEEATPIQAETIPLVLAG------NDVIGQAQTGTGKTAAFGLPVLQQLDLDLRQIQAV 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I++P   LA Q  E +    +  +  V+++ G      + K LE+      HI++GT   
Sbjct: 74  IISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLEQ---HTPHILVGTPGR 130

Query: 386 FQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTL 435
             D IQ           LIL   DE    G    +   +         LL +AT     L
Sbjct: 131 LLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQTLLFSATMPKEIL 190

Query: 436 VL--TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            +    + +  I KI  K      +    +     ++     +++  +  +   +  +  
Sbjct: 191 KIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLIDVQAPELTIVFGRT- 249

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+  +   E    + A IHG ++   + +V+  FKNG   +L+AT V   
Sbjct: 250 -------KRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAAR 302

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   + +   +      + +H++ GR GR     + +    P           + K 
Sbjct: 303 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKK 361

Query: 614 TEDGFLIAEED 624
             D      +D
Sbjct: 362 RMDPLKPPTQD 372


>gi|77460208|ref|YP_349715.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77384211|gb|ABA75724.1| cold-shock dead-box protein A [Pseudomonas fluorescens Pf0-1]
          Length = 557

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 142/373 (38%), Gaps = 46/373 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ +I  IL           I Q   G+GKT    + +   ++      QA+I+A
Sbjct: 28  EPSAIQQQSIPIILAGHD------MIGQAQTGTGKTAAFALPILHRIDPSKREPQALILA 81

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y  Q   + V  + G  P   + KA+       A I++ T     
Sbjct: 82  PTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN----GAQIVVATPGRLC 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLT 438
           D ++           L+L   DE  + G    L+          ++  A P   +T++ +
Sbjct: 138 DHLRRDEKVLQTVNHLVLDEADEMLKLGFMDDLE----------VIFKAMPETRQTVLFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I  I E+   R P    I    +    IE+  +++   +K   +   +E +   
Sbjct: 188 ATLPQSIRAIAERHL-RDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFD 246

Query: 499 NFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                V          S  +      A ++G ++   +E V+DS K+G   +++AT V  
Sbjct: 247 ALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   + +   +  +   + +H++ GR GR       +LL  P         L V++
Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGREGRALLLVTPRE----RRMLQVIE 361

Query: 613 NTEDGFLIAEEDL 625
               G  +AE  L
Sbjct: 362 RVT-GQKVAEVRL 373


>gi|332557965|ref|ZP_08412287.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
 gi|332275677|gb|EGJ20992.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
          Length = 516

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 145/390 (37%), Gaps = 54/390 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+          +     G+GKT    + M   +  G       +++
Sbjct: 24  TPTPIQAQAIPHALEGKDV------LGIAQTGTGKTASFTLPMITILGKGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y +++++   ++ G +    + K ++R       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDR----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     ++VDE  R      +   ++       + + TP   +TL  ++
Sbjct: 134 LLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIER-------IFSLTPFTRQTLFYSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-------KVVLSEGKKAYWICPQI 492
               +I +IT        +K  +       E IE+        +   S   K   +   I
Sbjct: 187 TMAPEIERITNTFLTG-AVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRALI 245

Query: 493 EEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             + E         N +  V+      +    + + IHG +    +   +D F++G+  L
Sbjct: 246 RAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSLHL 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+A+ V   G+D+   S +   +        +H++ GR GR         +  P   K+ 
Sbjct: 306 LVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRI-GRTGRAGRKGKAYTIAVPSDEKHV 364

Query: 605 YTRLSVLK------NTEDGFLIAEEDLKQR 628
               S++K         +GF +  ED   R
Sbjct: 365 TAIESLVKQAIPRGELPEGFSL--EDRPDR 392


>gi|157278092|ref|NP_001098146.1| VASA [Oryzias latipes]
 gi|14522857|dbj|BAB61047.1| VASA [Oryzias latipes]
          Length = 617

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 134/366 (36%), Gaps = 37/366 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  +  I            +     GSGKT   L+ +   + A G         
Sbjct: 203 KPTPVQKYGLPIISAGRD------LMACAQTGSGKTAAFLLPILQQLMADGVAASRFSEI 256

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +AVI+AP   L  Q Y+  +K++  T +   ++ G +   ++ + +E+  +    ++
Sbjct: 257 QEPEAVIVAPTRELINQIYQEARKFSFGTCVRPVVVYGGVNTGYQMREIEKGCN----VL 312

Query: 380 IGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L  V     DE  R                    M +    +T
Sbjct: 313 CGTPGRLLDMIGRGKVGLSKVRHLVLDEADRMLDMGFEP--DMRRLVGSPGMPSKEERQT 370

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI ++         +   +  +      +E+  + +++  K   +   +  
Sbjct: 371 LMFSATFPEDIQRLAADFLKVDYLFVAVGVVGGACTDVEQTFLQVTKFNKREQLLDLLRT 430

Query: 495 ------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +           IHG     ++E  +  F++G C +L+AT
Sbjct: 431 IGSERTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKALADFRSGKCPVLVAT 490

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL-SKNSYTR 607
           +V   G+D+ D   ++  +  +     +H++ GR GR       +  Y P + S+ + + 
Sbjct: 491 SVASRGLDIPDVQHVVNFDLPNTIDDYVHRI-GRTGRCGNTGRAVSFYDPDVDSQLARSL 549

Query: 608 LSVLKN 613
           + +L  
Sbjct: 550 VGILAK 555


>gi|332994521|gb|AEF04576.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
          Length = 588

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 145/380 (38%), Gaps = 45/380 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + +   I Q + +     P+  Q  +I  +L+          + Q   G+GKT    + M
Sbjct: 12  LKLPEPILQALEKVGYEKPSPIQAESIPLLLEGHD------LLGQAQTGTGKTAAFALPM 65

Query: 315 AAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALER 370
            A ++      Q +++AP   LA Q  E  + Y   +  I V  + G     ++ + L+R
Sbjct: 66  LANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSHKIKVLPVYGGQSYDNQIRQLKR 125

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATA 420
                  +++GT     D I+   L        +L   DE  R G    ++L        
Sbjct: 126 ----GVQVVVGTPGRVIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPAE 181

Query: 421 PHVLLMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKTV---IIPINRIDEVIERL 475
               L +AT P P + +    L D    KI  K +    I+     + P ++++ +   +
Sbjct: 182 RQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQVAPHHKLEALTRIM 241

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +V   +G   +               + VE  + L       +  ++G +    +E  +D
Sbjct: 242 EVERFDGMIIFV----------RTKTATVELADKLSARGYD-VEPLNGDIPQNARERTVD 290

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             K G   +L+AT V+  G+DV   S +I  +  +   + +H++ GR GR       IL 
Sbjct: 291 KLKQGNIDILVATDVVARGLDVERVSHVINYDVPYDSESYVHRI-GRTGRAGRTGDAILF 349

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
               +S      L  ++ T 
Sbjct: 350 ----ISHREKRMLFSIEKTT 365


>gi|325995530|gb|ADZ50935.1| Cold-shock DEAD-box protein A [Helicobacter pylori 2018]
 gi|325997128|gb|ADZ49336.1| ATP dependent RNA helicase [Helicobacter pylori 2017]
          Length = 491

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---K 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++ +   K
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPEK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ S + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|261188002|ref|XP_002620418.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis SLH14081]
 gi|239593429|gb|EEQ76010.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis SLH14081]
          Length = 548

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/368 (19%), Positives = 137/368 (37%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           +   + GSGKTL   +     + A        G  
Sbjct: 152 KPTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPI 205

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T 
Sbjct: 206 VLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDLTR----GVEVCIATP 261

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++  +        L+L   D     G + +++    Q        + +AT    
Sbjct: 262 GRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMWSATWPKD 321

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIP----INRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I           T I+       + D + + L  ++ E K A  
Sbjct: 322 VRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHLDRIMEENKSAKV 381

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +            R   +    L +    +++I HG     +++ V++ FK G   +++A
Sbjct: 382 LIFT------GTKRVADDITRFLRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVA 434

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV D + ++  +  +     +H++ GR GR     + I L+    +K +   
Sbjct: 435 TDVASRGIDVRDITHVLNYDYPNNSEDYVHRI-GRTGRAGAKGTAITLFTTDNAKQARDL 493

Query: 608 LSVLKNTE 615
           +S+L  ++
Sbjct: 494 VSILTESK 501


>gi|256077046|ref|XP_002574819.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238660034|emb|CAZ31052.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 637

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/373 (16%), Positives = 131/373 (35%), Gaps = 44/373 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-------------AAVE 319
           PT  Q+ AI  I            +     GSGKT   LI +              A + 
Sbjct: 196 PTPVQKHAIPIIASGRD------LMACAQTGSGKTAAFLIPILNNMIKQGPGDSISATIN 249

Query: 320 AGGQ-----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
              +     A+I+AP   LA Q ++  +K++  + I   ++ G      +   L    + 
Sbjct: 250 NNRRKQFPVALILAPTRELASQIFDDARKFSYRSLIRPCVLYGGADMRTQLMELSEGCN- 308

Query: 375 QAHIIIGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
              +++ T     D ++  ++ L      ++DE  R          ++      L  +  
Sbjct: 309 ---LLVATPGRLSDVLERGRVGLDYCRFLVLDEADRMLDMGFEPQIRRIVEQDALPPS-- 363

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              +TL+ ++    +I  + +         T +  +    E I +  + + E  K   + 
Sbjct: 364 GERQTLMFSATFPNEIQILAKDFLNNYIFLT-VGRVGSTSENITQTILWVEENAKRDTLI 422

Query: 490 PQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +   +           R   +   +        +A IHG  +  D+E  +  F++G  
Sbjct: 423 DLLAHSEAGTLILVFVETRRGADALENYLYSQKFQVASIHGDRTQEDRELALSCFRSGRT 482

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++     
Sbjct: 483 PVLVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRI-GRTGRVGNLGLATSFFNDKNRN 541

Query: 603 NSYTRLSVLKNTE 615
            +   + +L+   
Sbjct: 542 LARGLVELLEEAN 554


>gi|119582642|gb|EAW62238.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_a [Homo
           sapiens]
 gi|119582646|gb|EAW62242.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_a [Homo
           sapiens]
          Length = 883

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 427

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 428 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 487

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 488 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 544 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 596

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 597 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 715

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 716 KGYAYTFITEDQARYAGDIIKALE 739


>gi|294789302|ref|ZP_06754540.1| ATP-dependent RNA helicase RhlE [Simonsiella muelleri ATCC 29453]
 gi|294482727|gb|EFG30416.1| ATP-dependent RNA helicase RhlE [Simonsiella muelleri ATCC 29453]
          Length = 455

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 69/344 (20%), Positives = 124/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------EAGGQA 324
           SPT  Q  AI   L D         +     GSGKT   L+     +         G + 
Sbjct: 25  SPTPIQMQAIPAALADKD------IMASAQTGSGKTAAFLLPSLQKIIKRSEKPGKGPRV 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +  + Y  N   +    + G      + K L R       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNAQIYANNMKWVRTVTLVGGSSFGQQIKMLSRP----IDVIVATP 134

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      I + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDHMRSGRIDFERLEVLILDEADRMLDMGFIDDIET-------IVAATPEDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    I   ++  ++ E+L     +  K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKNPEIIEIEREDKQGKIEEQLLYCDDKNHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGMAISF 349


>gi|165869135|ref|ZP_02213795.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167641387|ref|ZP_02399638.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170704569|ref|ZP_02895035.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177649201|ref|ZP_02932203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190565289|ref|ZP_03018209.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|229603661|ref|YP_002866798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254685050|ref|ZP_05148910.1| ATP-dependent RNA helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254722456|ref|ZP_05184244.1| ATP-dependent RNA helicase [Bacillus anthracis str. A1055]
 gi|254737496|ref|ZP_05195199.1| ATP-dependent RNA helicase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743317|ref|ZP_05201002.1| ATP-dependent RNA helicase [Bacillus anthracis str. Kruger B]
 gi|254751811|ref|ZP_05203848.1| ATP-dependent RNA helicase [Bacillus anthracis str. Vollum]
 gi|254760330|ref|ZP_05212354.1| ATP-dependent RNA helicase [Bacillus anthracis str. Australia 94]
 gi|164715861|gb|EDR21378.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167510664|gb|EDR86059.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170130370|gb|EDS99231.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|172084275|gb|EDT69333.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190563316|gb|EDV17281.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|229268069|gb|ACQ49706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
          Length = 447

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 26  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 79

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 80  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 135

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 136 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATIPKDIKKLA 194

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 195 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 253

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 254 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 313

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 314 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 360


>gi|154298956|ref|XP_001549899.1| p68 RNA helicase [Botryotinia fuckeliana B05.10]
 gi|150857630|gb|EDN32822.1| p68 RNA helicase [Botryotinia fuckeliana B05.10]
          Length = 473

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 161/453 (35%), Gaps = 64/453 (14%)

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
           LQK+++       ++   P+  K F    P     + +++               +   I
Sbjct: 8   LQKQNW-------DLSTMPKFEKSFYKEDPVVAARSEEDVAKF----RAQHNIAVQGPNI 56

Query: 254 PINVEGKIAQKI---------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           P  VE                 +  P +PT  Q       L           +   + GS
Sbjct: 57  PKPVETFDEAGFPAYVMTEVKAQGFP-APTPIQSQGWPMALSGRDV------VGIAETGS 109

Query: 305 GKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           GKTL   +     + A        G   +++AP   LA Q  + I K+ ++++I    + 
Sbjct: 110 GKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVY 169

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV 408
           G +P+  + + L +       + I T     D I+  K        L+L   D     G 
Sbjct: 170 GGVPKGGQIRDLAK----GVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGF 225

Query: 409 --QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGR--KPIKT 460
             Q R  L Q        + +AT       L S    +  ++     E  A      I  
Sbjct: 226 EPQIRKILGQIRPDRQTCMWSATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVE 285

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           V+    + D++ + L+ ++ +      I            R   +    L +    +++I
Sbjct: 286 VVSEFEKRDKMTKHLEKIMEDKDNKILIFT-------GTKRVADDITRFLRQDGWPALSI 338

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG     +++ V++ FK G   +++AT V   GIDV + + +   +  +     +H++ 
Sbjct: 339 -HGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRI- 396

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GR GR  +  + I L+     K +   ++VL  
Sbjct: 397 GRTGRAGQKGTAITLFTTDNQKQARDLVNVLTE 429


>gi|313233924|emb|CBY10092.1| unnamed protein product [Oikopleura dioica]
          Length = 611

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 137/377 (36%), Gaps = 54/377 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------EA 320
           PT  Q++AI  I +          +     GSGKT   L+ M +++             +
Sbjct: 163 PTPVQKNAIPIINKGRD------LMSCAQTGSGKTAAFLLPMLSSIFHSGPGESANQNSS 216

Query: 321 GGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
           G +        A++++P   LA Q YE  +K+   +Q+   +I G      + + L+R  
Sbjct: 217 GYRGRRKIYPLALVLSPTRELASQIYEESRKFAYRSQVRPCVIYGGADVGAQMRDLDR-- 274

Query: 373 HGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT------QKA 418
               H+++ T     D +   K        L L   D     G + +++           
Sbjct: 275 --GCHLLVATPGRLADFLDRGKIGLDYCRYLCLDEADRMLDMGFEPQIRRIVEKDAMPPK 332

Query: 419 TAPHVLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                L+ +AT       L    L +     +    +  + I   ++ ++  D+ I  L 
Sbjct: 333 GDRQTLMFSATFPKEIQHLARDFLDNYIFLTVGRVGSTSQNITQKVVWVDENDK-INFLT 391

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            +L+   +        E KK +++       ++           IHG  +  ++E  + S
Sbjct: 392 DLLTATDQNTCFVVFTETKKGADY------LDNYLYDRGFRSTCIHGDRNQREREGALKS 445

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+     +L+AT V   G+D+ +   +I  +        +H++ GR GR   I      +
Sbjct: 446 FREAVTPVLVATAVAARGLDIPNVRHVINFDLPSDIDEYVHRI-GRTGRVGNIGLATSFF 504

Query: 597 HPPLSKNSYTRLSVLKN 613
           +   S      L +L  
Sbjct: 505 NDKNSNIVRDLLELLIE 521


>gi|18857967|ref|NP_572424.1| CG10777 [Drosophila melanogaster]
 gi|7290853|gb|AAF46295.1| CG10777 [Drosophila melanogaster]
 gi|16648356|gb|AAL25443.1| LD32873p [Drosophila melanogaster]
 gi|220947598|gb|ACL86342.1| CG10777-PB [synthetic construct]
          Length = 945

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 141/383 (36%), Gaps = 46/383 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L        ++ I Q   GSGKTL  ++     +          G  
Sbjct: 259 KPTAIQSQGWPIAL----SGRDLVGIAQ--TGSGKTLAYMLPAIVHIGNQPPIIRGEGPI 312

Query: 324 AVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           A+++AP   LAQQ    ++ Y      +I    I G   +  + + L+R       +II 
Sbjct: 313 ALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDR----GVEVIIA 368

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPI 431
           T     D ++           L+L   D     G   Q R  + Q      V++ +AT  
Sbjct: 369 TPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSATWP 428

Query: 432 PRTLVLTSLGDIDISKI----TEKPAGRKP-----IKTVIIPINRIDEVIERLKVVLSEG 482
                L      D  +I        A         I T I    R+  ++  +  + + G
Sbjct: 429 KEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEISPIKNSG 488

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                I   +E       +  VE    +      +   IHG  +  +++SV+  F+NG  
Sbjct: 489 NNGNKIIVFVET------KIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKS 542

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +LIAT V   G+DV D   +I  +  +     +H++ GR GR +++ +    + P  +K
Sbjct: 543 NILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRI-GRTGRCQQLGTAYTFFTPDNAK 601

Query: 603 NSYTRLSVLKNTEDGFLIAEEDL 625
            +   +SVL+        A  DL
Sbjct: 602 QARELISVLEEAGQTPSQALLDL 624


>gi|256860908|gb|ACV32356.1| vasa [Scomber japonicus]
          Length = 643

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 128/354 (36%), Gaps = 42/354 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 230 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQQLMADGVAASRFSEL 283

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K+   T +   ++ G +   H+ + +ER  +    ++
Sbjct: 284 QEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIRDIERGCN----VV 339

Query: 380 IGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            GT     D I        +   L+L   D     G +  ++    +       M +   
Sbjct: 340 CGTPGRLLDMIGRGKVGVSKLRYLVLDEADRMLDMGFEPDMRRLVGSPG-----MPSKED 394

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            +TL+ ++    DI ++         +   +  +      +E+  + +++  K   +   
Sbjct: 395 RQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDL 454

Query: 492 IEE------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++             +   +   +           IHG     ++E  +  F++G C ++
Sbjct: 455 LKTTGMERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVM 514

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +AT+V   G+D+ D   ++  +  +     +H++ GR GR       +  Y P 
Sbjct: 515 VATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFYDPD 567


>gi|30262474|ref|NP_844851.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47527766|ref|YP_019115.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185310|ref|YP_028562.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|167632590|ref|ZP_02390917.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170687052|ref|ZP_02878271.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|227814717|ref|YP_002814726.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|30257105|gb|AAP26337.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47502914|gb|AAT31590.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49179237|gb|AAT54613.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|167532888|gb|EDR95524.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170669103|gb|EDT19847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|227002434|gb|ACP12177.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
          Length = 450

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATIPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|119477499|ref|ZP_01617690.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
 gi|119449425|gb|EAW30664.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
          Length = 608

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 77/360 (21%), Positives = 137/360 (38%), Gaps = 36/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q + I  +L           +     G+GKT    + + + ++      Q +++A
Sbjct: 29  QPSPIQAATIPHLLNG------DDLLGVAQTGTGKTAAFALPLLSRIDLKKNSPQVLVLA 82

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  K Y  Q     V  I G    + + + L+R     AH+++GT     
Sbjct: 83  PTRELAIQVAEAFKTYASQMKGFHVLPIYGGQDMSGQLRQLKR----GAHVVVGTPGRVM 138

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTAT-PIP-RTL 435
           D ++   L        +L   DE  R G    ++   + T P   V L +AT P P R +
Sbjct: 139 DHLRRGSLNLDGLTGLVLDEADEMLRMGFIDDVEWILEHTPPKRQVALFSATMPKPIRKV 198

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEE 494
               L D    +I         I+   + +N  D  ++ +  +L  +   A  I  +   
Sbjct: 199 ADRYLSDPKEVRIATDATTAPRIEQRYLIVNGFDRKLDAITRILEADDFDAMIIFVRT-- 256

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 ++         E    S + ++G M+   +E  ++  K     +++AT V   G
Sbjct: 257 ------KTATAELAEKLEARGYSASALNGDMNQALRERTINRLKKKQLDIIVATDVAARG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV   S ++  +  +   A +H++ GR GR       IL   P   +  +T     + T
Sbjct: 311 IDVERVSHVLNFDIPYDPEAYVHRI-GRTGRAGREGKAILFVAPREKRLLHTIEKSTRQT 369


>gi|299747858|ref|XP_001837294.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coprinopsis
           cinerea okayama7#130]
 gi|298407711|gb|EAU84911.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coprinopsis
           cinerea okayama7#130]
          Length = 1081

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 93/473 (19%), Positives = 171/473 (36%), Gaps = 67/473 (14%)

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI--LRNIPFS-PTKSQESAIKDILQDM 288
           ELL   +  + +R     +  I  +  G  A  I  ++ + ++ PT  Q  AI  I+   
Sbjct: 400 ELLRLALDGIKIRGVDCPKPVIKWSHFGLPASCIEVIKRLNYTAPTSIQAQAIPAIMSGR 459

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEF 340
                   I     GSGKT+  L+ +   ++         G  A++M P   LA Q ++ 
Sbjct: 460 DV------IGVAKTGSGKTIAFLLPLFRHIKDQRPLEQMEGPMALVMTPTRELAVQIHKD 513

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QY 392
            K + +   +      G  P   +   L++     A II+ T     D +          
Sbjct: 514 CKPFLKVLGLRAVCAYGGSPIKDQIAELKK----GAEIIVCTPGRMIDLLTANSGRVTNL 569

Query: 393 YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
            ++  V++DE  R           K            P  +T++ ++     +  +  K 
Sbjct: 570 KRVTYVVLDEADRMFDMGFEPQVMKIINNIR------PDRQTVLFSATFPKQMDSLARK- 622

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV-------VE 505
             RKP++  +   + +   IE++  V +E  K   +   + +    +            E
Sbjct: 623 ILRKPLEITVGGRSVVAAEIEQIVEVRAEDTKFNRLLEILGQMYNDDPECRTLIFVDRQE 682

Query: 506 RFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             ++L             +HG    +D++S +  FK G   ++IAT+V   G+DV    +
Sbjct: 683 AADNLLRDLMRKGYLCMSLHGGKDQVDRDSTIADFKAGVVPIVIATSVAARGLDVKQLKL 742

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           +I  +A +     +H+  GR GR     +C+    P   + S      LK +E       
Sbjct: 743 VINYDAPNHMEDYVHR-AGRTGRAGNKGTCVTFITPEQERYSVDIYRALKASEATIPKEL 801

Query: 623 ED-----LKQRKEGEILGIKQS-----GMPKFLIAQPELHDSLLEIARKDAKH 665
           ED     L++ K G+     Q+     G         E        AR+ A+ 
Sbjct: 802 EDLANGFLEKVKAGK----AQAAGSGFGGKGLDRLDKERD------ARERAER 844


>gi|260774297|ref|ZP_05883212.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
 gi|260611258|gb|EEX36462.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
          Length = 633

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/365 (21%), Positives = 142/365 (38%), Gaps = 27/365 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  Q +AI  +L           + +   G+GKT    + +   ++      QA++MA
Sbjct: 28  TPTPIQSAAIPLLLAGRD------ALGKAQTGTGKTAAFSLPLLNKLDLTQYKPQAIVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   +N   + V  I G      + +AL+      AHII+GT    +
Sbjct: 82  PTRELAIQVAAEIKTLGKNIKGLKVLEIYGGASIVDQMRALKS----GAHIIVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M  +P   + ++ ++     +
Sbjct: 138 DLITRERL---HLDECHTFVLDEADEMLKMGFVDDVTWIMEQSPETAQRVLFSATMPPIV 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
             I ++   R P +  +   N+    +E+   V+   +K   +   +E ++         
Sbjct: 195 KDIVDRFL-RDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLIARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V + + +   
Sbjct: 314 INHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTRTSMEEIQ 372

Query: 620 IAEED 624
           +   D
Sbjct: 373 LPHRD 377


>gi|195131547|ref|XP_002010212.1| GI14822 [Drosophila mojavensis]
 gi|193908662|gb|EDW07529.1| GI14822 [Drosophila mojavensis]
          Length = 963

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 90/445 (20%), Positives = 160/445 (35%), Gaps = 53/445 (11%)

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
           ++     + F I+ +P      E             +   ++   +    F++    P  
Sbjct: 191 ENLAPFQKDFYIM-HPNTMNRSEQAVAEMRHELEITVSGNELPHPVA--NFEESSLPPHI 247

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           ++    Q   +     PT  Q       L        ++ I Q   GSGKTL  ++    
Sbjct: 248 IDEMKRQGFTK-----PTAIQAQGWPIAL----SGRDLVGIAQ--TGSGKTLAYMLPAIV 296

Query: 317 AVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRK 366
            +          G  A+++AP   LAQQ    ++ Y      +I    I G   +  + +
Sbjct: 297 HISNQPPLMRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQAR 356

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQ 416
            LER       +II T     D ++           L+L   D     G   Q R  + Q
Sbjct: 357 DLER----GVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQ 412

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKI----TEKPAGRKPIKTV-IIPINRIDEV 471
                 V++ +AT       L      D  +I        A     + V I   N   ++
Sbjct: 413 IRPDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICNENEKPQL 472

Query: 472 IERLKVVLS---EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
           + RL   ++       +  I   +E       +  VE    +  +       IHG  S  
Sbjct: 473 LVRLLKEITSPSNNGGSNKIIIFVET------KIKVEDILQIIRNEGYVATSIHGDKSQS 526

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           +++SV+  F+NG   +LIAT V   G+DV D   +I  +  +     +H++ GR GR ++
Sbjct: 527 ERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRI-GRTGRCQQ 585

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKN 613
           + +    + P  +K +   +SVL+ 
Sbjct: 586 LGTAYTFFTPDNAKQARELISVLEE 610


>gi|126734915|ref|ZP_01750661.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           CCS2]
 gi|126715470|gb|EBA12335.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           CCS2]
          Length = 435

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 135/365 (36%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q  AI   +        ++ + Q   GSGKT    + M  A+   G        +
Sbjct: 23  DPTPIQTQAIPHAMNG----RDVMGLAQ--TGSGKTAAFGLPMIHALMKAGVKPNPKTSR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA+Q  + +  YT+ + + V ++ G      + K L     G   +++ T 
Sbjct: 77  GLILAPTRELAKQIADNLTAYTKGSHLKVALVVGGAGIVAQTKRLA----GGVDLLVATP 132

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +            L+L   D+    G    L+                   +T+
Sbjct: 133 GRLIDLLDRRAVRLDETIYLVLDEADQMLDMGFIHALRRIAP---------LLAKDRQTM 183

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     + ++         ++  + P  +  + I +    +++  K   +   +++ 
Sbjct: 184 MFSATMPKLMGELAGTYLT-DAVRVQVNPPGQAVKKINQSVHFVAQAAKTDLLIELLDKH 242

Query: 496 KES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           ++         +   E+   + E    + A IHG  S   ++  +++FK+G  ++L+AT 
Sbjct: 243 RDELAIVFGRTKHGCEKLYKVLEKKGFAAASIHGNKSQGQRQRALEAFKSGKTRVLVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D   +   +  +     +H++ GR  R     S + L  P           
Sbjct: 303 VAARGLDIPDVRFVYNYDLPNVAENYVHRI-GRTARAGADGSAVALVAPDEMIELKDIEK 361

Query: 610 VLKNT 614
            +K T
Sbjct: 362 AMKET 366


>gi|52143016|ref|YP_083814.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
 gi|51976485|gb|AAU18035.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
          Length = 450

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +         IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|330808371|ref|YP_004352833.1| cold-shock dead-box protein A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376479|gb|AEA67829.1| cold-shock dead-box protein A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 557

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 81/393 (20%), Positives = 147/393 (37%), Gaps = 46/393 (11%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
               N+   I   +       P+  Q+ +I  I+           I Q   G+GKT    
Sbjct: 8   FAAFNLNPNILAAVTATGYEEPSAIQQQSIPIIMAGHD------MIGQAQTGTGKTAAFA 61

Query: 312 IAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKA 367
           + +   ++      QA+I+AP   LA Q     + Y+ Q   + V  + G  P   + KA
Sbjct: 62  LPILHRIDPAKREPQALILAPTRELALQVATAFETYSKQMPGVTVVAVYGGAPMGPQLKA 121

Query: 368 LERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKAT 419
           +       A I++ T     D ++           L+L   DE  + G    L+      
Sbjct: 122 IRN----GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLE------ 171

Query: 420 APHVLLMTATP-IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               ++  A P   +T++ ++     I  I E+   R P    I    +    IE+  ++
Sbjct: 172 ----VIFKALPATRQTVLFSATLPQSIRAIAERHL-RDPQHVKIQTKTQTVTAIEQAHLL 226

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKES 532
           +   +K   +   +E +        V          S  E      A ++G ++   +E 
Sbjct: 227 VHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRER 286

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           V+DS K+G   +++AT V   G+DV   + +   +  +   + +H++ GR GR       
Sbjct: 287 VIDSLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGREGRA 345

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           +LL  P         L V++    G  +AE  L
Sbjct: 346 LLLVTPRE----RRMLQVIERVT-GQKVAEVRL 373


>gi|288799847|ref|ZP_06405306.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288333095|gb|EFC71574.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 445

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 135/367 (36%), Gaps = 46/367 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE+ I  IL      N+   +     G+GKT   L+ + + ++ GG        +IM
Sbjct: 7   TPIQEACIPAIL------NKKDILGVAQTGTGKTAAYLLPVLSLLDNGGYPKDKINCIIM 60

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ ++   Q +  +        +R     +     A +II T   F 
Sbjct: 61  SPTRELAQQIDQAMQGFSYYLQEVSSVAVYGGNDGNRYDQEIKSLKLGADVIIATPGRFI 120

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTAT--PIPRTL 435
             +    +        IL   D     G    +     +       ++ +AT  P   TL
Sbjct: 121 SHLSLGNIDTSGVSFFILDEADRMLDMGFYDDIMTIAKELPPHCQNIMFSATMPPKIETL 180

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE- 494
             T L + +  K+                +++  E I++   V  E +K   +       
Sbjct: 181 ARTILKNPETIKLA---------------VSKPAEKIKQSAYVCYEPQKLKIVTSLFNAD 225

Query: 495 --KKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             ++   F    ++   +++   S       +H  +S  +++ VM  FK G   +L+AT 
Sbjct: 226 NLQRVIIFSGKKDKVKDINKALLSKKINSGAMHSDLSQAERDEVMFKFKAGQIDVLVATD 285

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           ++  GID+ D  ++I  +  H     +H++ GR  R +     I L              
Sbjct: 286 IVSRGIDIDDIRMVINYDVPHDVEDYIHRI-GRTARADRDGKAITLVSDEDMFYFQQIEQ 344

Query: 610 VLKNTED 616
            L+ T D
Sbjct: 345 FLEKTID 351


>gi|326795184|ref|YP_004313004.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326545948|gb|ADZ91168.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 619

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 138/371 (37%), Gaps = 36/371 (9%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
            ++ +  P+  Q  +I  +L+          + Q   G+GKT    + + + ++      
Sbjct: 24  ADLGYEQPSAIQAQSIPYLLEGHD------LLGQAQTGTGKTAAFALPLLSRIDVTNKST 77

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E  + Y +N      + I G M    + + L R       +++G
Sbjct: 78  QLLVLAPTRELAIQVSEAFQSYARNIPDFHVLPIYGGMSYDTQLRQLRR----GVQVVVG 133

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTAT-- 429
           T     D I+   L        +L   DE  R G    ++   + T       L +AT  
Sbjct: 134 TPGRVMDHIRRKTLKLDGLQALVLDEADEMLRMGFIDDVEWILEHTPDGHQTALFSATMP 193

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P+ R +    L +    KI  K +    I      ++ I ++    +++         I 
Sbjct: 194 PVIRKVANKHLNNPKEVKILTKTSTATTISQKYWQVSGIHKLDALTRILEMNEHDGMIIF 253

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +        + VE    L     +    ++G +S   +E  +D  K G   +L+AT 
Sbjct: 254 VRTK-------AATVELAEKLTARGHA-CEALNGDISQNLRERTVDRIKKGQIDILVATD 305

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V+  G+DV   S ++  +  +   + +H++ GR GR     + IL       +       
Sbjct: 306 VVARGLDVDRVSHVVNYDIPYDTESYVHRI-GRTGRAGRSGTAILFVGHRERRMLQQIER 364

Query: 610 VLKNTEDGFLI 620
             +   +   +
Sbjct: 365 ATRQAIERMQL 375


>gi|291165179|gb|ADD81194.1| vasa [Auxis thazard]
          Length = 627

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 125/355 (35%), Gaps = 36/355 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 216 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQQLMADGVAASRFSEL 269

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K+   T +   ++ G +   H+ + + R  +    ++
Sbjct: 270 QEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREISRGCN----VV 325

Query: 380 IGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L      ++DE  R                    M +    +T
Sbjct: 326 CGTPGRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEP--DMRRLVGSPGMPSKENRQT 383

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI ++         +   +  +      +E+  + +++  K   +   ++ 
Sbjct: 384 LMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKT 443

Query: 495 ------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +           IHG     ++E  +  F++G C +L+AT
Sbjct: 444 TGSERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVAT 503

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +V   G+D+ D   ++  +  +     +H++ GR GR       +  Y P     
Sbjct: 504 SVAARGLDIPDVQHVVNFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFYDPDADGQ 557


>gi|291165177|gb|ADD81193.1| vasa [Auxis rochei]
          Length = 627

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 125/355 (35%), Gaps = 36/355 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 215 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQQLMADGVAASRFSEL 268

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K+   T +   ++ G +   H+ + + R  +    ++
Sbjct: 269 QEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREISRGCN----VV 324

Query: 380 IGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L      ++DE  R                    M +    +T
Sbjct: 325 CGTPGRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEP--DMRRLVGSPGMPSKENRQT 382

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI ++         +   +  +      +E+  + +++  K   +   ++ 
Sbjct: 383 LMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKT 442

Query: 495 ------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +           IHG     ++E  +  F++G C +L+AT
Sbjct: 443 TGTERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVAT 502

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +V   G+D+ D   ++  +  +     +H++ GR GR       +  Y P     
Sbjct: 503 SVAARGLDIPDVQHVVNFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFYDPDADGQ 556


>gi|255008452|ref|ZP_05280578.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313146179|ref|ZP_07808372.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313134946|gb|EFR52306.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 427

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 126/344 (36%), Gaps = 34/344 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQAVI 326
           SPT  QE +I  +LQ          +     G+GKT    I +   +       G +A++
Sbjct: 23  SPTPIQEQSIPILLQGKD------LLGCAQTGTGKTAAFSIPILQKLYKTDHRKGIKALV 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  + Y + T +   +I G + Q  +  AL     G   I++ T    
Sbjct: 77  LTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALR----GGIQILVATPGRL 132

Query: 387 QDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            D      +    L   ++DE  R      +   +       +L       +TL  ++  
Sbjct: 133 LDLISQGFVSLNSLDFFVLDEADRMLDMGFIHDIK------RILKLLPTKRQTLFFSATM 186

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE------K 495
             +I  +       KP K  + P +   ++I +    + + +K   +   +++       
Sbjct: 187 PPEIETLANS-MLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLLKDASIESVL 245

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  +   ++   +          IHG  +   ++  + +FKN T + LIAT +   GI
Sbjct: 246 IFTRTKYGADKLARILTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIATDIAARGI 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV   S +I     +     +H++ GR GR       I      
Sbjct: 306 DVDQLSHVINYELPNVPETYVHRI-GRTGRAGHEGVAISFCESE 348


>gi|229164405|ref|ZP_04292334.1| ATP-dependent RNA helicase dbpA [Bacillus cereus R309803]
 gi|228619055|gb|EEK75952.1| ATP-dependent RNA helicase dbpA [Bacillus cereus R309803]
          Length = 481

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 139/371 (37%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+           L++   DE    G   ++   + +  T    +L +AT  
Sbjct: 129 TPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +I         I+  +  +   +++     V   E   +  I 
Sbjct: 189 EDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVGEEEKLSLLKDVTTIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  +R          +        IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVYRQ--------LKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR  +    I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGKKGKAITFITPYENRFLEEI-- 357

Query: 610 VLKNTEDGFLI 620
               T  GF I
Sbjct: 358 ---ETYIGFAI 365


>gi|198425852|ref|XP_002130131.1| PREDICTED: similar to p68 RNA helicase isoform 1 [Ciona
           intestinalis]
 gi|198425854|ref|XP_002130146.1| PREDICTED: similar to p68 RNA helicase isoform 2 [Ciona
           intestinalis]
          Length = 585

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/366 (20%), Positives = 132/366 (36%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       L        ++ I Q   GSGKTL  ++     + A        G  
Sbjct: 136 APTPIQAIGWPHAL----GGQDLVGIAQ--TGSGKTLSFILPAMIHINAQPYLERGDGPI 189

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LAQQ       Y Q   I    + G   +A + + LER       I+I T 
Sbjct: 190 ALVLCPTRELAQQVQAVANDYGQLCHIRNTCVYGGASKAPQIRDLERGCE----IVIATP 245

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D ++  K        L+L   D     G   Q R  + Q       L+ +AT    
Sbjct: 246 GRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 305

Query: 434 TLVLTSLGDIDISKI------TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              L +    D   I               I  V     + ++++  ++ ++ E +    
Sbjct: 306 VQKLANDFLRDNVHIQIGSVNISANHNILQIVDVCTEDEKSEKLMRLMEEIMGEAENKTI 365

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I  + + K +   R++                 IHG  S  +++ V++ F+ G   +L+A
Sbjct: 366 IFTETKRKCDILTRNMRRD--------GWPAMCIHGDKSQPERDWVLNEFRTGKSPILVA 417

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +  +     +H++ GR  R  +  +    +    +K     
Sbjct: 418 TDVASRGLDVSDIKFVINFDFPNQCEDYIHRI-GRTARANQTGTAYTFFTQANAKQCKDL 476

Query: 608 LSVLKN 613
           + +LK 
Sbjct: 477 IEILKE 482


>gi|270004664|gb|EFA01112.1| hypothetical protein TcasGA2_TC010324 [Tribolium castaneum]
          Length = 574

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 140/373 (37%), Gaps = 44/373 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----- 319
           +R + F  PT  Q       L        M+ I     GSGKTL  ++     +      
Sbjct: 146 IRKMGFKHPTPIQSQGWPIAL----SGRDMVGI--ASTGSGKTLSYILPAIVHINHQPRL 199

Query: 320 ---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G  A+++AP   LAQQ  +    + ++++I    + G  P+  +   L        
Sbjct: 200 LRGDGPIALVLAPTRELAQQIQQVATDFGRSSKIRNTCVFGGAPKGPQANDLMD----GV 255

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLM 426
            I+I T     D ++  +        L+L   D     G   Q R  + Q       L+ 
Sbjct: 256 EIVIATPGRLIDFLESNRTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMW 315

Query: 427 TATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINRIDEVIERLKVVLS 480
           +AT       L +    D  +I     +  A      I  V     +  ++   LK +++
Sbjct: 316 SATWPKEVQALAAEFLKDYIQINVGSLQLSANHNILQIIDVCQEYEKETKLSTLLKEIMA 375

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           E +    I   IE KK  +     E    +      ++ I HG  S  +++ V+  F+ G
Sbjct: 376 EKENKTIIF--IETKKRVD-----EITRKMKRDGWPAVCI-HGDKSQQERDWVLQDFRTG 427

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+DV D   +I  +        +H++ GR GR +   +    + P  
Sbjct: 428 KAPILVATDVAARGLDVEDVKFVINFDYPSNSEDYVHRI-GRTGRSQRTGTAYTFFTPAN 486

Query: 601 SKNSYTRLSVLKN 613
           +  +   +SVLK 
Sbjct: 487 ANKAADLVSVLKE 499


>gi|148975750|ref|ZP_01812581.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
 gi|145964823|gb|EDK30075.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
          Length = 551

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/343 (18%), Positives = 135/343 (39%), Gaps = 36/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
            P+  QE A+  +L           +     G+GKT    + +   +  G +       A
Sbjct: 23  KPSPIQEKAVPAVLTGKDV------MAAAQTGTGKTAGFTLPILELLSKGPRVRQNQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q    + KY  N  +   ++ G +    + + L +     + +++ T  
Sbjct: 77  LVLTPTRELAAQVNGSVVKYGLNLPLTSSVVFGGVKINPQMQKLRK----GSDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRK-------ILAFLPKKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N   + +E+    + + KK+  +   I++     
Sbjct: 186 ATFSDDIRSLAKGLVNNPVEISVSPANSTAKTVEQSIYPVDKKKKSPMLAKLIKDNDWRQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    +     +    + A IHG  S   +   +++FK G  ++L+AT +   
Sbjct: 246 VLVFSKTKHGANKLARFLDEQGITAAPIHGNKSQGARTKALENFKTGKVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           GID+     ++  +  H     +H++ GR GR  E+   I L 
Sbjct: 306 GIDIPQLPQVVNFDLPHVSEDYVHRI-GRTGRAGEVGKAISLV 347


>gi|77463091|ref|YP_352595.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
 gi|77387509|gb|ABA78694.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
          Length = 518

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 145/390 (37%), Gaps = 54/390 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+          +     G+GKT    + M   +  G       +++
Sbjct: 26  TPTPIQAQAIPHALEGKDV------LGIAQTGTGKTASFTLPMITILGKGRARARMPRSL 79

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y +++++   ++ G +    + K ++R       ++I T   
Sbjct: 80  VLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDR----GVDVLIATPGR 135

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     ++VDE  R      +   ++       + + TP   +TL  ++
Sbjct: 136 LLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIER-------IFSLTPFTRQTLFYSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-------KVVLSEGKKAYWICPQI 492
               +I +IT        +K  +       E IE+        +   S   K   +   I
Sbjct: 189 TMAPEIERITNTFLTG-AVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRALI 247

Query: 493 EEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             + E         N +  V+      +    + + IHG +    +   +D F++G+  L
Sbjct: 248 RAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSLHL 307

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+A+ V   G+D+   S +   +        +H++ GR GR         +  P   K+ 
Sbjct: 308 LVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRI-GRTGRAGRKGKAYTIAVPSDEKHV 366

Query: 605 YTRLSVLK------NTEDGFLIAEEDLKQR 628
               S++K         +GF +  ED   R
Sbjct: 367 TAIESLVKQAIPRGELPEGFSL--EDRPDR 394


>gi|327302680|ref|XP_003236032.1| ATP-dependent RNA helicase DBP2 [Trichophyton rubrum CBS 118892]
 gi|326461374|gb|EGD86827.1| ATP-dependent RNA helicase DBP2 [Trichophyton rubrum CBS 118892]
          Length = 538

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 138/368 (37%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           +   + GSGKTL   +     + A        G  
Sbjct: 144 KPTPIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPI 197

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T 
Sbjct: 198 VLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLTR----GVEVCIATP 253

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++  +        L+L   D     G   Q R  ++Q        + +AT    
Sbjct: 254 GRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKD 313

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I  +        T    V+    + D +I+ L+ ++ + K    
Sbjct: 314 VRQLANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIKHLERIMEDKKSKVL 373

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            R   +    L +    +++I HG     +++ V++ FK G   +++A
Sbjct: 374 IFT-------GTKRVADDITRFLRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVA 425

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV D + ++  +  +     +H++ GR GR     + I L+    +K +   
Sbjct: 426 TDVASRGIDVRDITHVLNHDYPNNSEDYVHRI-GRTGRAGANGTAITLFTTENAKQARDL 484

Query: 608 LSVLKNTE 615
           + +L  ++
Sbjct: 485 VKILTESK 492


>gi|254432488|ref|ZP_05046191.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
 gi|197626941|gb|EDY39500.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
          Length = 610

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 130/343 (37%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q++AI +++           + Q   G+GKT    + + A ++A     Q +++A
Sbjct: 71  EPSPIQKAAIPELMLGRD------LVGQAQTGTGKTAAFALPLLAGLDAEQRKPQVLVLA 124

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E    Y      +    + G      +   L R     A +++GT     
Sbjct: 125 PTRELALQVAESFNSYAAQLPQVRTVAVYGGADFRDQIHHLRR----GAQVVVGTPGRVM 180

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPI--PRTL 435
           D +        +   L+L   DE  R G    ++    Q      V+L +AT     R +
Sbjct: 181 DHMRQGTLDLSELRSLVLDEADEMLRMGFIDDVEWVLGQLPEQRQVVLFSATMPAEIRRI 240

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L       I  K A    I+   + +    ++    +V+ SE  +   I  +    
Sbjct: 241 SQQYLNGPAEITIRTKAADASRIRQRFLTVPAPLKLAALERVLESETSEGVIIFART--- 297

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +++        E     +A+++G +    +E  ++  KNG   +L+AT V   G+
Sbjct: 298 -----KAITLTVAESLEAHGYDVAVLNGDVPQAQRERTIERLKNGQVDVLVATDVAARGL 352

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV    ++I  +    G A +H++ GR GR       IL   P
Sbjct: 353 DVERIGLVINYDIPFDGEAYVHRI-GRTGRAGRSGEAILFLTP 394


>gi|169347296|ref|ZP_02866234.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552]
 gi|169293913|gb|EDS76046.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552]
          Length = 531

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/368 (17%), Positives = 140/368 (38%), Gaps = 39/368 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EA 320
           ++++ FS P++ QE AI  +L        +  I Q   G+GKTL     + + +    + 
Sbjct: 19  IKDMGFSKPSQIQEKAIPILLTG------VDAIGQAQTGTGKTLAFGSVLLSKIKPIDDR 72

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             QA+I++P   LA Q +E + +  ++    +  + G      + +++++       I++
Sbjct: 73  FPQAIILSPTRELAMQIHEEMNRIGKHNGSKIVCVFGGSDIEKQIRSIKK----GVDIVV 128

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++   L        +L   DE    G  + +           +L       
Sbjct: 129 GTPGRVMDLMRRKVLKFDNVKYVVLDEADEMLNMGFVEDI---------ETILEKVDDAR 179

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +T++ ++     I KI +           ++        +++    +    +   +C  I
Sbjct: 180 QTILFSATMPAGIKKIAQNYMHDDFKHVAVLSKQTTATSVKQFYYEVKPKDRFETLCRLI 239

Query: 493 EE------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +             +  V+      +    ++  +HG ++   + + +  FK GT   L+
Sbjct: 240 DVANIKTGIIFCRTKRSVDEVTEQMQQSNYNVEAMHGDLNQNHRMNTLRKFKKGTINFLV 299

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   GIDV + + +I         + +H++ GR GR ++      +  P        
Sbjct: 300 ATDVAARGIDVENVTHVINYELPQDIESYVHRI-GRTGRADKEGLAYSIISPKEVSFLKQ 358

Query: 607 RLSVLKNT 614
              V K+T
Sbjct: 359 IERVTKST 366


>gi|117921821|ref|YP_871013.1| ATP-dependent RNA helicase DbpA [Shewanella sp. ANA-3]
 gi|117614153|gb|ABK49607.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 479

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 70/432 (16%), Positives = 152/432 (35%), Gaps = 47/432 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
             T  Q  ++  IL           I QG  GSGKT    + +   ++      Q +++ 
Sbjct: 44  EMTPIQAQSLPAILAGEDV------IGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLC 97

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+   +    + V  + G +P   +  +LE      AHII+GT     
Sbjct: 98  PTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEH----GAHIIVGTPGRIV 153

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++  +L L  +          R+           ++  +    +TL+ ++     I  
Sbjct: 154 DHLERNRLDLSNL-NMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATFPEQIQS 212

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFR 501
           I  K     P+   +   +    + +    +  +  +   +   + ++K        N +
Sbjct: 213 IA-KQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKPESAVVFCNTK 271

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              ++          S+  +HG +   D++  +  F N +  +L+AT V   G+D+    
Sbjct: 272 RETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALD 331

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            +   +  +     +H++ GR GR     +    +              L+       + 
Sbjct: 332 AVFNYHVAYDTEVHIHRI-GRTGRAGSKGAAFTFFDDQDGYKIALLEEYLERDIQSEALP 390

Query: 622 EEDL--------------------KQRKEGEILG--IKQSGMPKFLIAQPEL--HDSLLE 657
              L                    ++ + G+ILG    ++G+    + +  +  + + + 
Sbjct: 391 SLSLLGTAPNAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKILVTDYRAYVA 450

Query: 658 IARKDAKHILTQ 669
           + RK AK  L++
Sbjct: 451 VNRKVAKKALSK 462


>gi|223982748|ref|ZP_03632977.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM
           12042]
 gi|223965288|gb|EEF69571.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM
           12042]
          Length = 424

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 132/356 (37%), Gaps = 26/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +PTK Q+ AI  +L+          +     G+GKT    + +   +    Q       A
Sbjct: 23  TPTKIQQKAIPPVLEGRD------LLGLAQTGTGKTAAFALPILDQLMKQPQKGKRAIKA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  +  + Y Q   +   +I G + Q  +   L++     A I+I T  
Sbjct: 77  LVLTPTRELAIQIVDNFQLYGQGLPLKTVVIFGGVKQGAQVDQLKK----GADILIATPG 132

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D +    L L  V E        R+           +        +TL+ ++    +
Sbjct: 133 RLLDLVGQRLLDLSQV-EIFVLDEADRMLDMGFIHDVKRVSALLVNKKQTLLFSATMPKE 191

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------ 498
           I+ +      + P++    P++   E IE+    + + +K   +   +++++ +      
Sbjct: 192 IAGLAAS-LLKNPVRVEATPVSTPIEKIEQRVYYVEKSEKNDLLLRVLKKEEVTSALVFT 250

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +   +R              IHG  S   ++  + +FKN   ++L+AT +   GID+ 
Sbjct: 251 RTKHEADRVVRFLTKGHVQAMAIHGNKSQNARQKALAAFKNHEIQVLVATDIAARGIDIE 310

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
             S +I  N  +     +H++ GR  R  +    I                +++ T
Sbjct: 311 KLSHVINYNIPNISETYVHRI-GRTARAGQEGIAISFCQNDERAYLKDIEKLIRYT 365


>gi|170038849|ref|XP_001847260.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167862451|gb|EDS25834.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 709

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/412 (19%), Positives = 158/412 (38%), Gaps = 56/412 (13%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
             +V  ++ ++I +     P+  Q  A   +L+       M+ I Q   G+GKTL  L+ 
Sbjct: 296 AFHVWPELLEEIRKAGFVKPSPIQAQAWPVLLKGED----MIGIAQ--TGTGKTLAFLLP 349

Query: 314 MAAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
               ++          G   ++MAP   LA Q  + ++KY Q   I    + G      R
Sbjct: 350 AFIHIDGQPVPRGQRGGPNVLVMAPTRELALQIEKEVQKY-QFKGIKAICLYGG---GDR 405

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQ 416
           R+ ++++  G   III T     D +            L+L   D     G + ++    
Sbjct: 406 RQQIKKVGEG-VEIIICTPGRLNDLVSANVIDITSITYLVLDEADRMLDMGFEPQI---- 460

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-----RIDEV 471
                  LL+   P  +T++ ++     + ++ +    + P++  +  ++      + + 
Sbjct: 461 -----RKLLLDIRPDRQTIMTSATWPPGVRRLAQSYM-KNPVQVYVGTLDLAATHTVTQQ 514

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
           IE +       +   ++    +  K   F     R + L   F  S      IHG     
Sbjct: 515 IEVIDEEDKYVRVMGFVKNMGKNDKAIIFCGRKTRADDLSSEFVLSGINCQSIHGDRDQA 574

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D+E  ++  K+G  ++LIAT V   G+D+ D + ++  +        +H++ GR GR   
Sbjct: 575 DREQALEDIKSGDVRVLIATDVASRGLDIEDITHVVNYDFPRNIEEYVHRV-GRTGRAGR 633

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL--KQRKEGEILGIKQ 638
               +  +       +   + +L+        AE+D+  + R   E    K+
Sbjct: 634 TGISLSFFTRSDWAIAAELIKILEE-------AEQDVPDEIRAMAERFAAKK 678


>gi|156087226|ref|XP_001611020.1| eukaryotic initiation factor 4A-3 (eIF4A-3)  [Babesia bovis T2Bo]
 gi|154798273|gb|EDO07452.1| eukaryotic initiation factor 4A-3 (eIF4A-3) , putative [Babesia
           bovis]
          Length = 395

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 125/345 (36%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK IL           I+Q   G+GKT V  +     V       Q ++++
Sbjct: 44  KPSAVQQRAIKPILDGRDV------IIQSQSGTGKTCVFCLGALQIVNPASKQTQVLLLS 97

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q  +          + V    G    +   KALE       HI+ GT      
Sbjct: 98  PTRELAEQSQKVCLALGDYCNVEVHCCIGGKRVSDDIKALES----GVHIVSGTPGRVNH 153

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I    L        IL   DE    G + ++    +            P  + +++++ 
Sbjct: 154 MIAERHLNTRNIKQMILDEADEMLNRGFKDQVYSIYRYLP---------PTLQVILVSAT 204

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK----- 495
              ++ +ITEK         V      +D + +    V  E  K   +C   E       
Sbjct: 205 LPQEVVEITEKFMNNPFRVLVKRDELTLDGIKQFFVAVEKEQWKFDTLCDLYESLIITQA 264

Query: 496 -KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N R  V+      +    ++  +HG MS  ++  +M  F+ G  ++LI+T +   G
Sbjct: 265 VVFCNTREKVDWLAKRMQDSNFTVCKMHGEMSQKERNDIMQRFRRGESRVLISTDIWGRG 324

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +DV   S+++  +  +     +H++ GR GR       I      
Sbjct: 325 LDVQQVSLVVNYDLPNSRENYIHRI-GRSGRYGRKGVAINFVKDD 368


>gi|118785473|ref|XP_314684.3| AGAP008578-PA [Anopheles gambiae str. PEST]
 gi|116127754|gb|EAA10198.3| AGAP008578-PA [Anopheles gambiae str. PEST]
          Length = 596

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 122/354 (34%), Gaps = 45/354 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------G 321
            PT  Q  AI  IL           +     GSGKT   ++ M   +             
Sbjct: 196 KPTPIQRYAIPIILNGRD------LMACAQTGSGKTAAFMLPMIHHLLDKEDSLELRTRN 249

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              VI+AP   LA Q ++  +K+   T++ V +  G     H+ + +     G  H+++ 
Sbjct: 250 PYIVIVAPTRELAIQIHDEGRKFAHGTKLKVCVSYGGTAVQHQLQLMR----GGCHVLVA 305

Query: 382 THALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQK---------ATAPHVLLMT 427
           T     D I      +  +  V++DE  R      L   +K               L+ +
Sbjct: 306 TPGRLLDFIDRGYVTFENVNFVVLDEADRMLDMGFLPSIEKVMGHATMPEKQQRQTLMFS 365

Query: 428 ATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           AT     + L    L +     +         ++  I  + +  +  +  +++     K 
Sbjct: 366 ATFPAEIQELAGKFLHNYICVFVGIVGGACADVEQTIHLVEKFKKRKKLEEILNGGNPKG 425

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             +            +   +   SL          IHG     ++E  +  FK+G   +L
Sbjct: 426 TLVFV--------ETKRNADYLASLMSETQFPTTSIHGDRLQREREMALYDFKSGRMDVL 477

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           IAT+V   G+D+ + + ++  +        +H++ GR GR          Y P 
Sbjct: 478 IATSVAARGLDIKNVNHVVNYDLPKSIDDYVHRI-GRTGRVGNKGRATSFYDPE 530


>gi|70989821|ref|XP_749760.1| ATP-dependent RNA helicase [Aspergillus fumigatus Af293]
 gi|74668891|sp|Q4WH83|DBP3_ASPFU RecName: Full=ATP-dependent RNA helicase dbp3
 gi|66847391|gb|EAL87722.1| ATP-dependent RNA helicase, putative [Aspergillus fumigatus Af293]
 gi|159129169|gb|EDP54283.1| ATP-dependent RNA helicase, putative [Aspergillus fumigatus A1163]
          Length = 503

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/400 (22%), Positives = 157/400 (39%), Gaps = 56/400 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           SPT  Q +    +            I   + GSGKTL   +     +   G+        
Sbjct: 107 SPTPIQSATWPLLFAGRDV------IGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARP 160

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            AVI++P   LA Q Y+ + K+  +  I V  I G + +  +R+AL+      A I++ T
Sbjct: 161 AAVIISPTRELAMQIYDQLSKFGASVDIRVTCIYGGVKKDEQREALK-----TAAIVVAT 215

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATA---PHVLLMTATPI 431
               +D     S+   K+  +++DE  R    G +Q +K   ++T       ++ TAT  
Sbjct: 216 PGRLKDLKDDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRSTPDSTRQTVMFTATWP 275

Query: 432 P--RTLVLTSLGDIDISKITEKPAGR-------KPIKTVIIPINRIDEVIERLKVVLSEG 482
           P  R L  + +       I   P+         K +  V+ P  +   +++ L       
Sbjct: 276 PSVRDLAASFMTSAVTVTIGGDPSADPRANTRIKQVVEVVKPQEKEARLVQLLSRSQRGA 335

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                +      KKE+       R   L       +A IHG ++  ++   +++FK G+ 
Sbjct: 336 AVGDKVLVFCLYKKEAV------RVERLLRSKNFKVAGIHGDLNQHERFKSLEAFKTGSA 389

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+    ++I           +H++ GR GR       I L+      
Sbjct: 390 TVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRI-GRTGRAGADGHAITLFTEADKA 448

Query: 603 NSYTRLSVLKNTEDGFLIAEEDL--KQRKEGEILGIKQSG 640
            S   ++VL+        A++D+     K G  +  KQ G
Sbjct: 449 QSGALINVLRA-------AKQDVPDALLKFGTTVKKKQHG 481


>gi|229005142|ref|ZP_04162865.1| ATP-dependent RNA helicase [Bacillus mycoides Rock1-4]
 gi|228756117|gb|EEM05439.1| ATP-dependent RNA helicase [Bacillus mycoides Rock1-4]
          Length = 433

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/357 (21%), Positives = 131/357 (36%), Gaps = 35/357 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  ++           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 26  TPIQEKAIPVVMAGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 79

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    I+K       I V  I G    A + + L     G  HI++ T     D 
Sbjct: 80  RELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRKL----KGNTHIVVATPGRLLDH 135

Query: 390 IQY--------YKLILVIVDEQHRFG--VQQRLKLTQKATAPHVLLMTATPIP--RTLVL 437
           ++           L+L   D+   FG        L +   +   +L +AT     + L  
Sbjct: 136 LRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQTMLFSATMPKDIKKLAK 195

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
             + + ++ +I         IK  +I     D   +     + +  + +        K  
Sbjct: 196 RYMKEPEMIQIQSAEVTVNNIKQRVIET--TDRAKQDALRHVMDRDQPFLAVIFCRTK-- 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              R   + ++ L  +   +   +HG +S   +E VM SF++   + LIAT V   G+DV
Sbjct: 252 ---RRASKLYDDLKGYGY-NCDELHGDLSQGKRERVMKSFRDAKIQYLIATDVAARGLDV 307

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
              + +   +      + +H++ GR GR       I    P            +  T
Sbjct: 308 EGVTHVFNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAPKDEMYLKEIEKGIGAT 363


>gi|330953563|gb|EGH53823.1| helicase [Pseudomonas syringae Cit 7]
          Length = 557

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 142/373 (38%), Gaps = 46/373 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ +I  IL           I Q   G+GKT    + +   ++      QA+I+A
Sbjct: 28  EPSAIQQQSIPIILAGHD------MIGQAQTGTGKTAAFALPILHRIDPSKREPQALILA 81

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y  Q   + V  + G  P   + KA+       A I++ T     
Sbjct: 82  PTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN----GAQIVVATPGRLC 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLT 438
           D ++           L+L   DE  + G    L+          ++  A P   +T++ +
Sbjct: 138 DHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLE----------VIFKAMPESRQTVLFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I  I E+   R P    I    +    IE+  +++   +K   +   +E +   
Sbjct: 188 ATLPQSIRAIAERHL-RDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFD 246

Query: 499 NFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                V          S  E      A ++G ++   +E V++S K+G   +++AT V  
Sbjct: 247 ALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   + +   +  +   + +H++ GR GR       +LL  P         L V++
Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGREGRALLLVTPRE----RRMLQVIE 361

Query: 613 NTEDGFLIAEEDL 625
               G  +AE  L
Sbjct: 362 RVT-GQKVAEVRL 373


>gi|322806278|emb|CBZ03846.1| ATP-dependent RNA helicase BA2475 [Clostridium botulinum H04402
           065]
          Length = 376

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 126/369 (34%), Gaps = 39/369 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE +I  I            I +   G+GKTL  L+ M   +       Q +I+ 
Sbjct: 24  EPTPIQEESIMLIKSG------NDVIAEAQTGTGKTLAFLLPMFENISPDIDAIQGLIIT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  +   + +    G      + K L        H++I T     D
Sbjct: 78  PTRELAIQITEEAMKLKEAKDLNILATYGGKDIGSQIKKL----KNNIHLVIATPGRLLD 133

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPRT--LV 436
            +            L+L   DE    G +   R  +         L  +AT       L 
Sbjct: 134 HLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATMNSEVKKLA 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
             ++ D  +  I ++    K IK V+I      +  +  K++  E      I  +     
Sbjct: 194 YKNMRDPKLIIIEKEEVTLKNIKQVLIETTDRRKQEDLCKILDEENPFMAIIFCRT---- 249

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+           +   +HG ++   +E +M SFKN   + LIAT V   G+D
Sbjct: 250 ----KRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + +   +      + +H++ GR GR  E     L   P   +        +K    
Sbjct: 306 ITGVTHVFNYDIPENAESYIHRI-GRTGRAGEKGYTFLFVAPKDEQTLGMIEKEIK---- 360

Query: 617 GFLIAEEDL 625
            F I    L
Sbjct: 361 -FKIPRRAL 368


>gi|315040958|ref|XP_003169856.1| ATP-dependent RNA helicase DBP2 [Arthroderma gypseum CBS 118893]
 gi|311345818|gb|EFR05021.1| ATP-dependent RNA helicase DBP2 [Arthroderma gypseum CBS 118893]
          Length = 558

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 138/368 (37%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           +   + GSGKTL   +     + A        G  
Sbjct: 163 KPTPIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPI 216

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T 
Sbjct: 217 VLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLTR----GVEVCIATP 272

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++  +        L+L   D     G   Q R  ++Q        + +AT    
Sbjct: 273 GRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKD 332

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I  +        T    V+    + D +I+ L+ ++ + K    
Sbjct: 333 VRQLANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIKHLERIMEDKKSKVL 392

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            R   +    L +    +++I HG     +++ V++ FK G   +++A
Sbjct: 393 IFT-------GTKRVADDITRFLRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVA 444

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV D + ++  +  +     +H++ GR GR     + I L+    +K +   
Sbjct: 445 TDVASRGIDVRDITHVLNHDYPNNSEDYVHRI-GRTGRAGANGTAITLFTTENAKQARDL 503

Query: 608 LSVLKNTE 615
           + +L  ++
Sbjct: 504 VKILTESK 511


>gi|222096052|ref|YP_002530109.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|221240110|gb|ACM12820.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
          Length = 451

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 26  TPIQEQAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPT 79

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 80  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 135

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 136 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PDSKQTMLFSATMPKDIKKLA 194

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +         IE+  +  ++  K     ++  + +      F     R
Sbjct: 195 KRYMD-EPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 253

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 254 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 313

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 314 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 360


>gi|28868981|ref|NP_791600.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|301381308|ref|ZP_07229726.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061477|ref|ZP_07253018.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302130057|ref|ZP_07256047.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28852221|gb|AAO55295.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|330877010|gb|EGH11159.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|330968143|gb|EGH68403.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
 gi|331016872|gb|EGH96928.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 562

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 142/373 (38%), Gaps = 46/373 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ +I  IL           I Q   G+GKT    + +   ++      QA+I+A
Sbjct: 28  EPSAIQQQSIPIILAGHD------MIGQAQTGTGKTAAFALPILHRIDPTKREPQALILA 81

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y  Q   + V  + G  P   + KA+       A I++ T     
Sbjct: 82  PTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN----GAQIVVATPGRLC 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLT 438
           D ++           L+L   DE  + G    L+          ++  A P   +T++ +
Sbjct: 138 DHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLE----------VIFKAMPETRQTVLFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I  I E+   R P    I    +    IE+  +++   +K   +   +E +   
Sbjct: 188 ATLPQSIRAIAERHL-RDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFD 246

Query: 499 NFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                V          S  E      A ++G ++   +E V++S K+G   +++AT V  
Sbjct: 247 ALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   + +   +  +   + +H++ GR GR       +LL  P         L V++
Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGREGRALLLVTPRE----RRMLQVIE 361

Query: 613 NTEDGFLIAEEDL 625
               G  +AE  L
Sbjct: 362 RVT-GQKVAEVRL 373


>gi|257205736|emb|CAX82519.1| belle [Schistosoma japonicum]
          Length = 939

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 132/371 (35%), Gaps = 42/371 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------- 323
           PT  Q+ A+  I        +   +     GSGKT   L+ +   +              
Sbjct: 181 PTPVQKYALPIISA------KRDLMACAQTGSGKTAAFLLPILNMLFEDKHCENPEASTL 234

Query: 324 -------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                  A+I+AP   L+ Q Y+  +K++  + I   ++ G      + + L        
Sbjct: 235 NCIAYPVALILAPTRELSSQIYDEARKFSYRSNIKPCVVYGGASILAQIREL----SHGC 290

Query: 377 HIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           ++++ T     D +   K+ L  +     DE  R          ++    H   M     
Sbjct: 291 NLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADRMLDMGFEPQIRRIVEQH--GMPPAGK 348

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            +TL+ ++    +I  +  +      I   +  +   +E I +  + +++  K   +   
Sbjct: 349 RQTLMFSATFPKEIQTLA-RDFLHSYIFLAVGRVGSTNENIIQEVLNVADKDKPDMLVRL 407

Query: 492 IEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           ++ K            +   +            +A IHG     ++E  + SF++G   +
Sbjct: 408 LQGKDPDGLALVFVETKRGADILAKFLCQLNFPVASIHGDRPQTEREHALQSFRSGRTPI 467

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+D+ +   +I  +        +H++ GR GR  +  S    +        
Sbjct: 468 LIATAVAARGLDIPNVKHVINFDLPSDIEEYVHRI-GRTGRMGQSGSATSFFSEKNQNVV 526

Query: 605 YTRLSVLKNTE 615
              + +L+ ++
Sbjct: 527 RDLVELLRESK 537


>gi|217033461|ref|ZP_03438891.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10]
 gi|216944166|gb|EEC23594.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10]
          Length = 492

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ + + +FK     +L+AT V   
Sbjct: 260 SIVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDIGGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|300214210|gb|ADJ78626.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 492

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 132/371 (35%), Gaps = 34/371 (9%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAV 325
            F   T  Q   I  +L           I Q   G+GKT    + +   ++      QAV
Sbjct: 20  GFEEATPIQAETIPLVLAG------NDVIGQAQTGTGKTAAFGLPVLQQLDLDLRQIQAV 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I++P   LA Q  E +    +  +  V+++ G      + K LE+      HI++GT   
Sbjct: 74  IISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLEQ---HTPHILVGTPGR 130

Query: 386 FQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTL 435
             D IQ           LIL   DE    G    +   +         LL +AT     L
Sbjct: 131 LLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQTLLFSATMPKEIL 190

Query: 436 VL--TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            +    + +  I KI  K      +    +     ++     +++  +  +   +  +  
Sbjct: 191 KIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLIDVQAPELTIVFGRT- 249

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+  +   E    + A IHG ++   + +V+  FKNG   +L+AT V   
Sbjct: 250 -------KRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAAR 302

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   + +   +      + +H++ GR GR     + +    P           + K 
Sbjct: 303 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKK 361

Query: 614 TEDGFLIAEED 624
             D      +D
Sbjct: 362 RMDPLKPPTQD 372


>gi|126665223|ref|ZP_01736206.1| ATP-dependent RNA helicase DeaD [Marinobacter sp. ELB17]
 gi|126630593|gb|EBA01208.1| ATP-dependent RNA helicase DeaD [Marinobacter sp. ELB17]
          Length = 504

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/365 (20%), Positives = 132/365 (36%), Gaps = 35/365 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +PT  Q  +I  +L           +     G+GKT    + + + V+      Q +++A
Sbjct: 26  TPTPIQAQSIPALLSGR------HLLGVAQTGTGKTAAFALPLLSRVDPNVNAPQILVLA 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E    Y         + I G      + K L R     AH+I+GT     
Sbjct: 80  PTRELAIQVAEAFSTYASKLPNFHVLPIYGGQDFFPQIKGLRR----GAHVIVGTPGRML 135

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--L 435
           D ++           L+L   DE  R G    +   L++        L +AT  P+   +
Sbjct: 136 DHLRKGTLKLDNLKALVLDEADEMLRMGFIDDVEAILSKTPDNCQRALFSATMPPQIKKV 195

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D    +I         I   ++P+    ++    +++  E   A  I  +    
Sbjct: 196 AQTYLKDAVEVRIESASRTVDAISQYVLPVYAERKLDALTRILEVEPFDASIIFVRT--- 252

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++              + A ++G ++   +E  ++  K G   +++AT V   G+
Sbjct: 253 -----KAETIVLAEKLAARGHAAAPLNGDLNQRQREQTVEDLKRGKKDIVVATDVAARGL 307

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   + +I  +  +   A +H++ GR GR       ILL  P       T       T 
Sbjct: 308 DVPRITHVINYDVPYDTEAYIHRI-GRTGRAGRDGKAILLVTPRERSWLRTLERATNATM 366

Query: 616 DGFLI 620
           + + +
Sbjct: 367 EAYEL 371


>gi|21226849|ref|NP_632771.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
 gi|20905151|gb|AAM30443.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
          Length = 587

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 130/363 (35%), Gaps = 41/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            PT  QE  I   L+  +       I Q   G+GKT      +   +       QA+I+ 
Sbjct: 27  EPTPIQEKVIPLFLKGEA-----DIIGQAQTGTGKTTAFGAPIIEKIPEKSGHVQAIILT 81

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E +     + ++ +  I G      + + L+        I++GT     D
Sbjct: 82  PTRELAIQVSEELNSIKGDKKLYIVPIYGGQSMTQQLRVLKS----GVDIVVGTPGRVID 137

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            ++   L L  +        DE    G    +           +L +  P  R L  ++ 
Sbjct: 138 HLERKSLNLEHIAYFVLDEADEMLNMGFIDDI---------KEILKSTGPNKRMLFFSAT 188

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
               I  I +K        T I      + + E++   + E  K   +C  I+ + E   
Sbjct: 189 MPKAILGIVKKHMQNYEHIT-IEKEELTETLTEQIYFEVKESDKFEALCRIIDIEDEFYG 247

Query: 501 RSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                     + L +  +        +HG +S  ++E +++ F+     +L AT V   G
Sbjct: 248 LVFCRTKTDTSQLAQKLSDRGYLADALHGDLSQQEREKILNKFRKQKINILAATDVAARG 307

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP----PLSKNSYTRLSV 610
           ID++D + +I         + +H++ GR GR  +  + I          L+    T  S 
Sbjct: 308 IDIMDLTHVINYALPQDPESYVHRI-GRTGRAGKQGTAITFVTSTEFRRLTYIKKTSKSE 366

Query: 611 LKN 613
           +K 
Sbjct: 367 MKK 369


>gi|313217515|emb|CBY38596.1| unnamed protein product [Oikopleura dioica]
 gi|313229431|emb|CBY24018.1| unnamed protein product [Oikopleura dioica]
          Length = 401

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/340 (21%), Positives = 128/340 (37%), Gaps = 33/340 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I+    ++      QA+I+ 
Sbjct: 50  KPSAIQQRAIKQIIKGRDV------IAQAQSGTGKTATFSISTLQVLDTSVRETQALILC 103

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + I        +   +  G        + L+       H+++GT     D
Sbjct: 104 PTRELAQQVQKVILALGDYMNVQAHVCIGGTNVGEDIRKLDFGQ----HVVVGTPGRTFD 159

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        IL   DE    G ++++         A  V L++AT     L +T
Sbjct: 160 MIRRRNLRTRNIKLLILDEADEMLNRGFKEQIYDVYRYLPPATQVCLVSATLPHEILEMT 219

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 220 HKFMSDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 272

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             + +  V+           +++ +HG M   ++  +M  F++G  ++LI+T V   G+D
Sbjct: 273 FCSTKRKVDWLAEKMREANFTVSAMHGDMPQKERNEIMREFRSGQTRVLISTDVWARGLD 332

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           V   S+II  +  +     +H++ GR GR       I   
Sbjct: 333 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFV 371


>gi|255326780|ref|ZP_05367856.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
 gi|255295997|gb|EET75338.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
          Length = 744

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 82/417 (19%), Positives = 152/417 (36%), Gaps = 47/417 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA------- 317
           L  + +  P+  QE  I  +L+          +     G+GKT    +   +        
Sbjct: 81  LEEVGYEKPSPIQEQTIPLLLEGHDV------VGLAQTGTGKTAAFALPALSRMAELADV 134

Query: 318 --VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHG 374
             +    Q +++AP   LA Q  E    Y  + +   V  I G  P   +   L R    
Sbjct: 135 NGISRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRR---- 190

Query: 375 QAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVL 424
            A +++GT     D ++   L        +L   DE  R G  + ++   + T     V 
Sbjct: 191 GAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSKQVA 250

Query: 425 LMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT     R +    L D    ++  K      I    + +    ++    +V+  E 
Sbjct: 251 LFSATMPNSIRKIAQQYLNDPTEIRVKAKTTTSANISQRYMQVMHSHKLDAMTRVLEVEN 310

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                +  + +++ E       E  + L     ++ AI +G +    +E  +D+ ++G  
Sbjct: 311 YDGIIVFVRTKKETE-------EVADKLKARGFAAAAI-NGDIPQQLRERTVDALRDGRI 362

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+DV   S+++  +  H   + +H++ GR GR     + IL   P    
Sbjct: 363 DILVATDVAARGLDVERISLVVNYDIPHDTESYVHRI-GRTGRAGREGAAILFVTPREKY 421

Query: 603 NSYTRLSVLKNTED--GFLIAE---EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
                    +   +      AE   E  KQR   +I    +S    F     E +++
Sbjct: 422 MLRQIEKATRQKVEPMHMPTAEAVNETRKQRFAQQITETIESEDLSFFRQIIEDYEN 478


>gi|238018738|ref|ZP_04599164.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
 gi|237865209|gb|EEP66499.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
          Length = 521

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 86/417 (20%), Positives = 153/417 (36%), Gaps = 50/417 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT  Q+ AI   +           I Q   G+GKT    + +   V   E   Q VI++
Sbjct: 25  EPTPIQQEAIPVAMSGKD------MIGQAQTGTGKTAAFGLPVLERVDGNERHVQVVILS 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + K  Q T I    I G      + +AL++       II+ T     D
Sbjct: 79  PTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKK----NPQIIVATPGRLMD 134

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            +            ++L   DE    G    +     A              +TL+ ++ 
Sbjct: 135 HMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPED---------HQTLLFSAT 185

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---E 497
               I ++ E     +P    + P     ++IE+  + + + +K   +C   + +     
Sbjct: 186 MPKAIQQLAETYLT-EPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDIQTPELA 244

Query: 498 SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F     R + + E           IHG +S   ++SV+  F+ GT  +L+AT V   G
Sbjct: 245 IIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+   S +   +      +  H++ GR GR  +         P   ++ +    + K  
Sbjct: 305 LDISGVSHVYNYDMPQDPESYTHRV-GRTGRAGKAGQAFTFVIPREMEHLHAIERLTKR- 362

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA--RKDAKHILTQ 669
                IA    +    GE+L  +Q      + +  E+ D+L  +A  +  A+ +L  
Sbjct: 363 ----KIARR--RAPSLGEVLEGQQ---RLAIESLVEMTDNLEALAPFKSSAEELLND 410


>gi|224369411|ref|YP_002603575.1| RhlE2 [Desulfobacterium autotrophicum HRM2]
 gi|223692128|gb|ACN15411.1| RhlE2 [Desulfobacterium autotrophicum HRM2]
          Length = 460

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 124/354 (35%), Gaps = 24/354 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAV 325
            PT  Q   I  IL           + +   G+GKT    + +   +  G       +A+
Sbjct: 23  EPTPIQIRVIPAILNGQD------ILARAQTGTGKTDAFALPIVEILARGKAHRRHPRAL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E IK Y +   +   ++ G +    +   L+R       I++ T   
Sbjct: 77  VLTPTRELALQVGESIKAYARRVSLRCTVVYGGVNVNPQIDRLKR----GVDILVATPGR 132

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D   + + + +   E   F    R+     +     +L       RT++ ++     I
Sbjct: 133 LLDLAAFNRDVKLSKIEFLVFDEADRMLDLGFSDEISQILELVPQDRRTMLFSATYTRQI 192

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN------ 499
             + +K   + P +  + P   + E I +   ++ +  K   +   I             
Sbjct: 193 RDLADK-MLKTPEQIEVTPNTTVAESIVQKVHLVEKSNKRELLIHLITRSDWRQVLVFTR 251

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +    +          S A +HG  S   +   +  FKNG  ++L+AT V   G+D+  
Sbjct: 252 TKHGANKLAERLAQVKISAAALHGNKSQSFRTRTLQEFKNGEIRILVATDVAARGLDITG 311

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
              ++  +        +H++ GR GR       + L          +  S+L+ 
Sbjct: 312 LPHVVNYDMPSVAEDYVHRI-GRTGRAGIQGVAVSLVSKEEKVFLKSVESLLEQ 364


>gi|160380700|sp|A6SFW7|DBP2_BOTFB RecName: Full=ATP-dependent RNA helicase dbp2
          Length = 514

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 161/453 (35%), Gaps = 64/453 (14%)

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
           LQK+++       ++   P+  K F    P     + +++               +   I
Sbjct: 49  LQKQNW-------DLSTMPKFEKSFYKEDPVVAARSEEDVAKF----RAQHNIAVQGPNI 97

Query: 254 PINVEGKIAQKI---------LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           P  VE                 +  P +PT  Q       L           +   + GS
Sbjct: 98  PKPVETFDEAGFPAYVMTEVKAQGFP-APTPIQSQGWPMALSGRDV------VGIAETGS 150

Query: 305 GKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           GKTL   +     + A        G   +++AP   LA Q  + I K+ ++++I    + 
Sbjct: 151 GKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVY 210

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV 408
           G +P+  + + L +       + I T     D I+  K        L+L   D     G 
Sbjct: 211 GGVPKGGQIRDLAK----GVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGF 266

Query: 409 --QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGR--KPIKT 460
             Q R  L Q        + +AT       L S    +  ++     E  A      I  
Sbjct: 267 EPQIRKILGQIRPDRQTCMWSATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVE 326

Query: 461 VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
           V+    + D++ + L+ ++ +      I            R   +    L +    +++I
Sbjct: 327 VVSEFEKRDKMTKHLEKIMEDKDNKILIFT-------GTKRVADDITRFLRQDGWPALSI 379

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG     +++ V++ FK G   +++AT V   GIDV + + +   +  +     +H++ 
Sbjct: 380 -HGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRI- 437

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GR GR  +  + I L+     K +   ++VL  
Sbjct: 438 GRTGRAGQKGTAITLFTTDNQKQARDLVNVLTE 470


>gi|317013693|gb|ADU81129.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Gambia94/24]
          Length = 491

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---K 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++ +   K
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNADITQRFYVINEHERAEAIMRLLDTQAPEK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ S + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|269119742|ref|YP_003307919.1| DEAD/DEAH box helicase [Sebaldella termitidis ATCC 33386]
 gi|268613620|gb|ACZ07988.1| DEAD/DEAH box helicase domain protein [Sebaldella termitidis ATCC
           33386]
          Length = 530

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 140/359 (38%), Gaps = 40/359 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
           SP+  Q   I ++L     K R   I Q   G+GKT    I +   ++  G  +A+++AP
Sbjct: 26  SPSAIQTLVIPELL-----KERTNLIGQAQTGTGKTAAFAIPILETLDCDGSVRAIVLAP 80

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +       +I V  + G      + K +++       +I+GT     D 
Sbjct: 81  TRELANQVADEMYSLRGKKEIKVLPVYGGQSIDQQIKKIKK----GIDVIVGTPGRILDL 136

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTS 439
           +    + L  +        DE    G  + ++L  + T     +L  +AT IP +++  +
Sbjct: 137 MNRKVIKLNNLEYFVLDEADEMLNMGFIEDIELILERTNEDKKMLFFSAT-IPDSIMKIA 195

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
              +   K+         +KT  +  N  +++       ++EG K   +C  ++   +  
Sbjct: 196 KKFMKDYKLL-------KVKTKELTTNLTEQIY----FEVTEGDKFEALCRVLDYVHDFY 244

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +S V+      +        IHG ++   +   ++ FK     +L+AT V   
Sbjct: 245 GIVFCRTKSDVDDVAQHLKGRGYDAEAIHGDITQAMRMKTLEDFKKKRINILVATDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           GIDV D + +I  +      + +H++ GR GR  +    I    P  +        + K
Sbjct: 305 GIDVNDLTHVINYSIPQEPESYVHRI-GRTGRAGKKGIAITFVTPKEASKISKIQRLTK 362


>gi|224551506|gb|ACN54195.1| Ddx3y [Bos taurus]
          Length = 635

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 146/379 (38%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + +   G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  ++++  ++ G      + + LER 
Sbjct: 257 SGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIIEQDTMPP 372

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 373 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFL 431

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L ++ + G  +  +   +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 432 LDLLNATGTDSLTLV-FVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRI-GRTGRVGNLGLATS 543

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      S   L +L  
Sbjct: 544 FFNERNINISKDLLDLLVE 562


>gi|262190914|ref|ZP_06049130.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|297580199|ref|ZP_06942126.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
 gi|262033210|gb|EEY51732.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|297535845|gb|EFH74679.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
          Length = 422

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 131/356 (36%), Gaps = 33/356 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQ-------- 323
           PT  Q+ AI  +LQ          +     G+GKT    + +    +E   Q        
Sbjct: 29  PTPIQQQAIPHVLQGKDV------LAGAQTGTGKTAAFGLPLIQRFIEQPWQRETNSKEI 82

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I T
Sbjct: 83  RALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLR----GGVDILIAT 138

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D      L L  V E        R+           +L   +P+ +TL  ++  D
Sbjct: 139 PGRLLDHAHVKSLFLGKV-EVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFD 197

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
             I  +  +   R PI+  + P N   E ++++   + + +K   +   I  K       
Sbjct: 198 SKIKAVAYR-IMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLV 256

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               R   +      +        I+G  S   ++  +D FK G  + LIAT V   G+D
Sbjct: 257 FTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLD 316

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     ++  +        +H++ GR GR       I L    LS +   +L  ++
Sbjct: 317 IAQLEQVVNYDMPFKAEDYVHRI-GRTGRAGLAGLAISL----LSHDEQPQLEAIE 367


>gi|332020302|gb|EGI60733.1| Putative ATP-dependent RNA helicase DDX5 [Acromyrmex echinatior]
          Length = 570

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/364 (21%), Positives = 135/364 (37%), Gaps = 39/364 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L        M+ I Q   GSGKTL  ++     +          G  
Sbjct: 136 EPTAIQAQGWPIAL----SGRDMVGIAQ--TGSGKTLAYILPAIVHINHQPRLSRNDGPI 189

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LAQQ  +    +  ++Q+    I G  P+  + + LER       I I T 
Sbjct: 190 ALILAPTRELAQQIQQVASDFGMSSQVRNTCIFGGAPKGPQARDLER----GVEICIATP 245

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G + +++    Q       L+ +AT    
Sbjct: 246 GRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKE 305

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            R L    L D     I   +  A    ++ V +      E      +     +      
Sbjct: 306 VRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKESKLMKLLEEISNEPENKTI 365

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +E K     R V +   +++ +   +I I HG  S  +++ V++ F+N    +L+AT 
Sbjct: 366 IFVETK-----RKVDDITRAINRYGWQAIGI-HGDKSQQERDYVLNQFRNSRSAILVATD 419

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV D   +I  +        +H++ GR GR +   +    + P  +  +   + 
Sbjct: 420 VAARGLDVEDVKFVINLDYPSNSEDYVHRI-GRTGRSQRTGTAYAFFTPGNAHKAGDLIQ 478

Query: 610 VLKN 613
           VL+ 
Sbjct: 479 VLEE 482


>gi|306783973|ref|ZP_07422295.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu003]
 gi|308331209|gb|EFP20060.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu003]
          Length = 563

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 131/352 (37%), Gaps = 23/352 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SPT  Q + I  ++           +     G+GKT    I M + ++      QA+++ 
Sbjct: 35  SPTAIQAATIPALMAG------SDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLV 88

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y    +Q+ V  I G    A +   L R     A +++GT     
Sbjct: 89  PTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR----GAQVVVGTPGRMI 144

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL-TSLGDIDIS 446
           D ++   L L  VD       +    LT         +++ TP  + + L ++     I 
Sbjct: 145 DHLERATLDLSRVD--FLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIR 202

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----NFRS 502
           K++ K     P +        +DE I +  + ++    A     ++E  +        + 
Sbjct: 203 KLSAKYL-HDPFEVTCKAKTAVDENISQSYIQVARKMDALTRVLEVEPFEAMIVFVRTKQ 261

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             E           S A I G +    +E  + + ++G   +L+AT V   G+DV   S 
Sbjct: 262 ATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDVERISH 321

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           ++  +  H   + +H++ GR GR     + ++   P             + T
Sbjct: 322 VLNYDIPHDTESYVHRI-GRTGRAGRSGAALIFVSPRELHLLKAIEKATRQT 372


>gi|296108765|ref|YP_003615714.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
           ME]
 gi|295433579|gb|ADG12750.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
           ME]
          Length = 357

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 124/344 (36%), Gaps = 43/344 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PTK QE  I  +L        +  + Q   G+GKT    + +   +      +A+I+ P
Sbjct: 23  KPTKIQEKIIPILLS-----EDVNIVGQAQTGTGKTAAFGLPIIEKINDEKEIKALILTP 77

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  E +K       + +  I G  P   +   L       A+I++GT     D 
Sbjct: 78  TRELAKQVAEELKSLKGKKNLKIVEIYGGKPIKEQIYKLR-----GANIVVGTPGRLLDH 132

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQR--LKLTQKATAPHVLLMTATPIPRTLVLTS 439
           I+   +        +L   DE    G  +     L       ++LL +AT     L L  
Sbjct: 133 IKRKTINLKNLSYFVLDEADEMLNMGFIEDVEEILKHTNDDKNILLFSATLPREILNLAK 192

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
               D                 +I +     +IE+    +S  +K   +C  I E+    
Sbjct: 193 KYMRDY---------------KLIKVKSSKNLIEQKHFKVSNSEKFNLLCKIINEENFYG 237

Query: 499 -NFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F    E   +L         S    HG++S   +E ++  FK     +L++T V   G
Sbjct: 238 LIFCKTREDVKNLARKLIEKGYSAEAFHGKLSQFRREKILKRFKMKKINILVSTDVAARG 297

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ID+   + +I  +        +H++ GR GR  +    I    P
Sbjct: 298 IDIEGLTHVINYSLPQNPEYYVHRI-GRTGRAGKRGKAITFVEP 340


>gi|198424291|ref|XP_002131481.1| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box
           protein 3, X-chromosomal) (Helicase-like protein 2)
           (HLP2) (DEAD box, X isoform) [Ciona intestinalis]
          Length = 733

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 132/387 (34%), Gaps = 46/387 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------- 323
           PT  Q+ AI  I      K  ++       GSGKT   L+   + +   G          
Sbjct: 278 PTPVQKYAIPII----QSKRDLMA--CAQTGSGKTAAFLLPTLSQLYTKGPGESLKATTS 331

Query: 324 -----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                      A++++P   LA Q Y+  +K+   + +   ++ G      + + L+R  
Sbjct: 332 HQRGRRKLFPLALVLSPTRELASQIYDEARKFAYRSHVRPCVVYGGADVGAQMRDLDR-- 389

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
               HI++ T     D I+  K+ L      I+DE  R          Q         MT
Sbjct: 390 --GCHILVATPGRLVDFIERGKVGLCYIRFVILDEADRMLDMGFEP--QIRRIVEQSDMT 445

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                +TL+ ++    +I  +         I   +  +      I +  V + E +K  +
Sbjct: 446 HKGERQTLMFSATFPKEIQILARDFLN-NYIFLAVGRVGSTSTNITQKVVWVDEEEKHKF 504

Query: 488 ICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +   +            +  +   +  +            IHG  +  ++E  + +F+ G
Sbjct: 505 LLDLVNATDSKSLTLIFTETKKGADALDEFLYTRKYKSTSIHGDRTQREREEALLAFRTG 564

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+D+ +   +I  +        +H++ GR GR   I      ++   
Sbjct: 565 EYPILVATAVAARGLDIPNVRHVINFDLPSDVDEYVHRI-GRTGRVGNIGLATSFFNNKN 623

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
                  + +L           E++  
Sbjct: 624 VNIVKDLVDLLIEASQEVPPWLENMAL 650


>gi|254448048|ref|ZP_05061512.1| cold-shock deAd box protein a [gamma proteobacterium HTCC5015]
 gi|198262474|gb|EDY86755.1| cold-shock deAd box protein a [gamma proteobacterium HTCC5015]
          Length = 586

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 159/427 (37%), Gaps = 52/427 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L +I +  P+  Q  +I  +++          +     G+GKT    + +   ++   A 
Sbjct: 21  LAHIGYEQPSPIQAESIPPLMEGRD------LLGTAQTGTGKTAAFALPLLTRIDTAVAQ 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E  K Y     Q  V  I G      + KAL+R       +I+
Sbjct: 75  PQVLVLAPTRELAIQVSEAFKSYAAGMNQFRVLPIYGGADIGGQIKALKR----GPQVIV 130

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++   L L  +        DE  R G  + +             ++ TP  
Sbjct: 131 GTPGRVMDHLRRKTLKLDQLQSVVLDEADEMLRMGFIEDVNWI----------LSHTPEE 180

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R + L S       K         P++  I       + IE+   ++ +G        +I
Sbjct: 181 RQIALFSATMPAPIKKLSAQYLNNPVEIKIKADTATVDRIEQSYWLV-KGTNKLDALTRI 239

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSI-------AIIHGRMSDIDKESVMDSFKNGTCKLL 545
            E ++ +   +  R  ++       +       A I+G M+   +E  +   K+    +L
Sbjct: 240 LEVEDFDGVIMFARTKNMTVELADKLEARGYRSAAINGDMTQKIRERTIKQLKDEKIDIL 299

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   GIDV   S +I  +  +   A +H++ GR GR       IL   P       
Sbjct: 300 VATDVAARGIDVARVSHVINFDIPYDTEAYVHRI-GRTGRAGRDGKAILFVAPRERHLLR 358

Query: 606 TRLSVLKNTEDGFLIA-EEDLKQRKEGEILG-----IKQSGMPKFLIAQPELHDSLLEIA 659
                 + T +   +   E +++++E +++       +QS          EL   LLE  
Sbjct: 359 AIEKATRQTIEPMTLPCRETVQKQREEKLVKRIVEAAEQSP----REGSKELVLRLLEEN 414

Query: 660 RKDAKHI 666
             DA+H+
Sbjct: 415 GIDAQHL 421


>gi|261409742|ref|YP_003245983.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261286205|gb|ACX68176.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
          Length = 538

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 88/382 (23%), Positives = 151/382 (39%), Gaps = 32/382 (8%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +      + ++ +  +K+       PT  Q+ +I  +LQ          I +   G+GKT
Sbjct: 10  RLPNFQQLGIDEQRVRKLKEQGITEPTPVQQESIPLLLQGKDV------IARAKTGTGKT 63

Query: 308 LVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKK--YTQNTQIIVEIITGNMPQA 362
           L  ++ +   ++   A  QA+I+AP   LA Q  E  KK    +   I +  + G     
Sbjct: 64  LAFMLPILQHIDPKRAYPQALIVAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVE 123

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            + + LE    G   +IIGT     D ++   L L  V +       Q L +        
Sbjct: 124 KQLRKLE----GGRQLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDEVEA 179

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKVVLSE 481
             L+ A P  R  +L S       K        +P+  VI   + I  E I+++ V  ++
Sbjct: 180 --LIHALPYRRQTMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLEQIQQVVVECTD 237

Query: 482 GKKAYWICPQIEEKK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
             K   +   IEE        F     R  +L+E   +       +HG +S   +E+VM 
Sbjct: 238 RSKQDALRAMIEEHNPFLAIIFCRTKRRATTLNEALLAHGYQSDELHGDLSQAKREAVMK 297

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F+    +LL+AT V   G+DV   + +   +  H   + +H++ GR GR       I  
Sbjct: 298 RFREAKLQLLVATDVAARGLDVEGVTHVFNYDMPHDVESYIHRI-GRTGRAGGSGMAI-- 354

Query: 596 YHPPLSKNSYTRLSVLKNTEDG 617
                +  +   L+ L+  E+G
Sbjct: 355 -----TFAAGKDLNDLQRIEEG 371


>gi|115533224|ref|NP_001041134.1| hypothetical protein F58E10.3 [Caenorhabditis elegans]
 gi|3877954|emb|CAB04518.1| C. elegans protein F58E10.3a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 561

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 156/436 (35%), Gaps = 46/436 (10%)

Query: 231 DELLAGQIALLLMRKQFKKEIGIPIN---VEGKIAQKILRNIPFSPTKSQESAI------ 281
           ++    + A +  R+Q++ +  +  N   +EG+   + +     +P   Q   +      
Sbjct: 91  EKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQIHELLYGKFQ 150

Query: 282 -KDILQDMSQKNRM---LRILQGDVGSGKTLVALIAMAAAVE--------AGGQAVIMAP 329
              ++Q +S    M     I     GSGKTL  ++     +          G   +++ P
Sbjct: 151 KPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVLLP 210

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ  E    +  +  + +  + G   +  + + LER       I++ T     D 
Sbjct: 211 TRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLER----GVDIVVATPGRLLDF 266

Query: 390 I--------QYYKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVLTS 439
           +        +   L+L   D     G + ++K    Q       L+ +AT       L S
Sbjct: 267 LDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATWPKEVRALAS 326

Query: 440 LGDIDISKIT----EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               D + +     E  A     + V I      +      +     +K       +E K
Sbjct: 327 DFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMELLNHIMNQKECKTIIFVETK 386

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                R   E   ++      ++ I HG  +  +++ V+  FK G   +++AT V   G+
Sbjct: 387 -----RKADELTRAMRRDGWPTLCI-HGDKNQGERDWVLQEFKAGKTPIMLATDVAARGL 440

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV D   +I  +  +     +H++ GR GR ++  +    +    +  +   L VL   +
Sbjct: 441 DVDDIKFVINYDYPNNSEDYVHRI-GRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAK 499

Query: 616 DGFLIAEEDLKQRKEG 631
                A  D+  R  G
Sbjct: 500 QTVPQALRDMANRSYG 515


>gi|302383278|ref|YP_003819101.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193906|gb|ADL01478.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 521

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/377 (19%), Positives = 138/377 (36%), Gaps = 49/377 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVIM 327
           T  Q  AI   L           +     G+GKT    + +   +  G       +A+++
Sbjct: 26  TPIQAQAIPVALAGRDV------LGIAQTGTGKTAAFTLPLIERLSKGRARARMPRALVL 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA Q     +KY + T++   ++ G +    +  AL +       ++I T     
Sbjct: 80  APTRELADQVAMSFEKYAKGTKLSWVLLIGGVSMGDQVAALNK----GVDVLIATPGRLL 135

Query: 388 DSIQYYK-----LILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTLVL 437
           D  +  K     + L++VDE  R      +   ++           L  +AT  P    L
Sbjct: 136 DLFERGKMMLNGVELMVVDEADRMLDMGFIPDIERIFKLTPPKRQTLFFSATMPPEITRL 195

Query: 438 TSLGDIDISKI-TEKPAGRKPIKTVII-------PINRIDEVIERLKVVLSEGKKAYWIC 489
           T     D ++I   +PA      T  +       P  +   + E +          +   
Sbjct: 196 TQAFLKDPTRIEASRPAMTAETITQYLVRIPSSDPKAKRAALRELMARADVRNGIVF--- 252

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +S V+      +      A IHG +    +   +  F++G  K+L+A+ 
Sbjct: 253 --------CNRKSEVDVVAKSLKQHGFDAAPIHGDLDQSLRTKTLADFRSGALKILVASD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D S +   +  H     +H++ GR GR  ++    ++  P   K+    + 
Sbjct: 305 VAARGLDIPDVSHVFNYDVSHHADDYVHRI-GRTGRAGKLGQAFMIVTPADDKSLDKVMK 363

Query: 610 VLKNTEDGFLIAEEDLK 626
           ++K + +  ++   DL 
Sbjct: 364 LIKMSPEELVL---DLD 377


>gi|146294198|ref|YP_001184622.1| ATP-dependent RNA helicase DbpA [Shewanella putrefaciens CN-32]
 gi|145565888|gb|ABP76823.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 458

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 153/432 (35%), Gaps = 47/432 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
             T  Q  ++  IL           I QG  GSGKT    + +   ++      Q +++ 
Sbjct: 23  EMTPIQAQSLPPILAGQDV------IGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLC 76

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+   +    + V  + G +P   +  +LE      AHII+GT     
Sbjct: 77  PTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEH----GAHIIVGTPGRIV 132

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +   +L L  +          R+       A   ++  A    +TL+ ++     I  
Sbjct: 133 DHLDRNRLDLSNL-NMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLFSATFPEQIQS 191

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFR 501
           I  K     P    +   +    + +    +  +  +   +   + E K        N +
Sbjct: 192 IA-KQIMYDPSMVKVEGNHDSLSIAQHFYHLDDDKARMQALQLLLLEHKPESAVVFCNTK 250

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              ++     E    S+  +HG +   D++  +  F N +  +L+AT V   G+D+    
Sbjct: 251 RETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALD 310

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            +   +  +     +H++ GR GR     +    Y+             L+       + 
Sbjct: 311 AVFNYHVAYDTEVHIHRI-GRTGRAGSKGAAYTFYNDQDGYKIALLEEYLEREITSESLP 369

Query: 622 EEDL--------------------KQRKEGEILG--IKQSGMPKFLIAQPEL--HDSLLE 657
            E L                    ++ + G+ILG    ++G+    + + ++  + + + 
Sbjct: 370 SESLLGNTPAAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKIQVTDYRAYVA 429

Query: 658 IARKDAKHILTQ 669
           + RK AK  L +
Sbjct: 430 VNRKVAKKALNK 441


>gi|126175665|ref|YP_001051814.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS155]
 gi|152999404|ref|YP_001365085.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS185]
 gi|160874024|ref|YP_001553340.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS195]
 gi|125998870|gb|ABN62945.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|151364022|gb|ABS07022.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160859546|gb|ABX48080.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
          Length = 458

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 153/432 (35%), Gaps = 47/432 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
             T  Q  ++  IL           I QG  GSGKT    + +   ++      Q +++ 
Sbjct: 23  EMTPIQAQSLPPILAGQDV------IGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLC 76

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+   +    + V  + G +P   +  +LE      AHII+GT     
Sbjct: 77  PTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEH----GAHIIVGTPGRIV 132

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +   +L L  +          R+       A   ++  A    +TL+ ++     I  
Sbjct: 133 DHLDRNRLDLSNL-NMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLFSATFPEQIQS 191

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFR 501
           I  K     P    +   +    + +    +  +  +   +   + E K        N +
Sbjct: 192 IA-KQIMYDPSMVKVEGNHDSLSIAQHFYHLDDDKARMQALQLLLLEHKPESAVVFCNTK 250

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              ++     E    S+  +HG +   D++  +  F N +  +L+AT V   G+D+    
Sbjct: 251 RETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALD 310

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            +   +  +     +H++ GR GR     +    Y+             L+       + 
Sbjct: 311 AVFNYHVAYDTEVHIHRI-GRTGRAGSKGAAYTFYNDQDGYKIALLEEYLEREITSESLP 369

Query: 622 EEDL--------------------KQRKEGEILG--IKQSGMPKFLIAQPEL--HDSLLE 657
            E L                    ++ + G+ILG    ++G+    + + ++  + + + 
Sbjct: 370 SESLLGNTPAAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKIQVTDYRAYVA 429

Query: 658 IARKDAKHILTQ 669
           + RK AK  L +
Sbjct: 430 VNRKVAKKALNK 441


>gi|330828434|ref|YP_004391386.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
 gi|328803570|gb|AEB48769.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
           B565]
          Length = 416

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 131/374 (35%), Gaps = 40/374 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
               Q+ L  + ++ PT  Q  AI  IL           +     G+GKT   ++ +   
Sbjct: 12  SPRLQQTLTELGYAAPTPIQARAIPVILAGRD------LMAGAQTGTGKTAAFVLPLLEQ 65

Query: 318 VEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           + A  Q        A+++ P   LA Q  E + +Y Q T +    + G +  A +  AL 
Sbjct: 66  LLAQPQMESQRPIRALVLVPTRELAVQVAESVARYGQGTGLTSTQVYGGVSIAAQVDAL- 124

Query: 370 RIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLK--LTQKAT 419
                   ++I T     D ++           L+    D     G    +   L Q   
Sbjct: 125 ---KNGVDLLIATPGRLLDHLRQGALSLDSLRHLVFDEADRMLDMGFMDEITALLKQLPV 181

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKV 477
               LL +AT       L+ +   D   I   P       ++  +  ++   ++     +
Sbjct: 182 DRQTLLFSATCDDNLFALSKVLLRDPELIEVAPRNTTAAEVEQRVYTVDSDRKLALVEHM 241

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           +  +G     I  +         R   ++          +    HG +S   +E V+  F
Sbjct: 242 LKVKGWAPALIFSRT--------RQGADKLAQQLGKSGINALAFHGDLSQSAREKVLLEF 293

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + GT + L+AT V   G+D+ D + +I           +H++ GR GR       I L+ 
Sbjct: 294 RAGTLQALVATDVAARGLDITDLNYVINLEFPFVAEDYVHRI-GRTGRAGNKGLAITLFS 352

Query: 598 PPLSKNSYTRLSVL 611
           P  +       +VL
Sbjct: 353 PEDTPLLEKVEAVL 366


>gi|312113545|ref|YP_004011141.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218674|gb|ADP70042.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 494

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 130/366 (35%), Gaps = 45/366 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+          +     G+GKT   ++ +   +E G       +++
Sbjct: 23  TPTPIQAQAIPFALEGRDV------VGIAQTGTGKTASFVLPLLNMLEQGRARARMPRSL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  +      ++ V ++ G +    + K LER     A I+I T   
Sbjct: 77  ILEPTRELAAQVAEAFETLGSQHKLTVALLIGGVSFDDQEKKLER----GADILIATPGR 132

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D     KL++  VD         R+           +     P  +TL  ++    +I
Sbjct: 133 LLDHFGRGKLLMNAVD-YLVIDEADRMLDMGFIPDIERICKLLPPSRQTLFFSATMPPEI 191

Query: 446 SKITEK------------PAGRKPIKTVIIPIN------RIDEVIERLKVVLSEGKKAYW 487
            K+T++            PA      T  +  +      +   + E ++  +S  + A  
Sbjct: 192 QKLTDQFLKNPEQVRVSAPATAAKNITQKLKFSPADSKTKRHVLRELMRSEVSTIQNAII 251

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C +         +  V   +        +   +HG +    + + +++F+ G    L A
Sbjct: 252 FCNR---------KRDVAVLHKSLVKHGFNAGALHGDLDQRQRTATLEAFRKGEITYLAA 302

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           + V   G+D+ + S +   +        +H++ GR GR        ++  P   K     
Sbjct: 303 SDVAARGLDIPEVSHVFNFDVPISPEDYVHRI-GRTGRAGRDGYAAMIVTPKEMKGVRAI 361

Query: 608 LSVLKN 613
            ++ K 
Sbjct: 362 ENLCKA 367


>gi|184154685|ref|YP_001843025.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
 gi|183226029|dbj|BAG26545.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
          Length = 492

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 129/341 (37%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE  I  +L           I Q   G+GKT    +     V+      Q +I++P 
Sbjct: 25  TPIQEQTIPMVLAGKDV------IGQAQTGTGKTAAFGLPTIEHVDVENPAIQTLIISPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + +  +  ++ V+++ G      + ++LE+       I++GT    +D +
Sbjct: 79  RELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLEK----NPQILVGTPGRLRDHL 134

Query: 391 QYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--LVLT 438
           +           L+L   DE    G  + +   + Q  +    LL +AT  P    + + 
Sbjct: 135 RRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQTLLFSATMPPEIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D    KI  K      +    +     ++     +++  +      +  + + + + 
Sbjct: 195 FMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMIDVQDPDLTIVFGRTKRRVDE 254

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             R ++ R          + A IHG ++   +  +M  FK G   +L+AT V   G+D+ 
Sbjct: 255 LSRGLIAR--------GYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR       +    P 
Sbjct: 307 GVTHVYNYDIPSDPDSYVHRI-GRTGRAGHHGVSLTFVTPN 346


>gi|65306809|gb|AAY41942.1| vasa-like protein [Anopheles gambiae]
          Length = 596

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 122/354 (34%), Gaps = 45/354 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------G 321
            PT  Q  AI  IL           +     GSGKT   ++ M   +             
Sbjct: 196 KPTPIQRYAIPIILNGRD------LMACAQTGSGKTAAFMLPMIHHLLDKEDSLELRTRN 249

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              VI+AP   LA Q ++  +K+   T++ V +  G     H+ + +     G  H+++ 
Sbjct: 250 PYIVIVAPTRELAIQIHDEGRKFAHGTKLKVCVSYGGTAVQHQLQLMR----GGCHVLVA 305

Query: 382 THALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQK---------ATAPHVLLMT 427
           T     D I      +  +  V++DE  R      L   +K               L+ +
Sbjct: 306 TPGRLLDFIDRGYVTFENVNFVVLDEADRMLDMGFLPSIEKVMGHATMPEKQQRQTLMFS 365

Query: 428 ATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           AT     + L    L +     +         ++  I  + +  +  +  +++     K 
Sbjct: 366 ATFPAEIQELAGKFLHNYICVFVGIVGGACADVEQTIHLVEKFKKRKKLEEILNGGNPKG 425

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             +            +   +   SL          IHG     ++E  +  FK+G   +L
Sbjct: 426 TLVFV--------ETKRNADYLASLMSETQFPTTSIHGDRLQREREMALYDFKSGRMDVL 477

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           IAT+V   G+D+ + + ++  +        +H++ GR GR          Y P 
Sbjct: 478 IATSVAARGLDIKNVNHVVNYDLPKSIDDYVHRI-GRTGRVGNKGRATSFYDPE 530


>gi|94311518|ref|YP_584728.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93355370|gb|ABF09459.1| RNA helicase [Cupriavidus metallidurans CH34]
          Length = 556

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/392 (17%), Positives = 141/392 (35%), Gaps = 40/392 (10%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
              ++ +I + +       PT  Q  AI  +L           +     G+GKT    + 
Sbjct: 77  SFGLDPRILRALTEQGYTKPTPIQAQAIPVVLLGKDV------MGAAQTGTGKTAGFALP 130

Query: 314 MAAAVEA-----------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           +   +               +A+++ P   LA Q Y+ + +Y ++T +   ++ G +   
Sbjct: 131 IIQRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMN 190

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            +  AL R       I++ T     D +Q   + L  V +        R+          
Sbjct: 191 PQTDALRR----GVEILVATPGRLLDHVQQKSVNLSQV-QMLVLDEADRMLDMGFLPDLQ 245

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            ++       +TL+ ++    +I K+      ++P+   +   N  +E + ++   + +G
Sbjct: 246 RIINLLPAQRQTLLFSATFSPEIKKLASSYL-KQPVTIEVARSNSTNENVRQVVYQVQDG 304

Query: 483 K-KAYWICPQIEEKKESNFRSV---------VERFNSLHEHFTSSIAIIHGRMSDIDKES 532
             +A  +    +   E   R             R     E    + A IHG  +  ++  
Sbjct: 305 HKQAAVVHLLKQRANEQQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQ 364

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            +D FKNGT   L+AT V   G+D+     +I  +        +H++ GR GR       
Sbjct: 365 TLDGFKNGTIDALVATDVAARGLDIPAMPCVINFDLPFSAEDYVHRI-GRTGRAGASGDA 423

Query: 593 ILLYHPPLSKNSYTRLSVL------KNTEDGF 618
           + ++ P         +  L      + + DGF
Sbjct: 424 LSIFVPGNDDRLLADIEKLIKRSIPRGSLDGF 455


>gi|313893137|ref|ZP_07826714.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442490|gb|EFR60905.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 523

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 125/344 (36%), Gaps = 38/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT  Q+ AI   +           I Q   G+GKT    + +   V   E   Q VI++
Sbjct: 25  EPTPIQQEAIPVAMSGKD------MIGQAQTGTGKTAAFGLPVLERVDGNERHVQVVILS 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + K  Q T I    I G      + +AL++       II+ T     D
Sbjct: 79  PTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKK----NPQIIVATPGRLMD 134

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            +            ++L   DE    G    +     A              +TL+ ++ 
Sbjct: 135 HMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPED---------HQTLLFSAT 185

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---E 497
               I ++ E     +P    + P     ++IE+  + + + +K   +C   + +     
Sbjct: 186 MPKAIQQLAETYLT-EPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDIQTPELA 244

Query: 498 SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F     R + + E           IHG +S   ++SV+  F+ GT  +L+AT V   G
Sbjct: 245 IIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +D+   S +   +      +  H++ GR GR  +         P
Sbjct: 305 LDISGVSHVYNYDMPQDPESYTHRV-GRTGRAGKAGQAFTFVIP 347


>gi|313672966|ref|YP_004051077.1| dead/deah box helicase domain protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939722|gb|ADR18914.1| DEAD/DEAH box helicase domain protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 528

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 127/343 (37%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            PT  QE  I  +LQ          + Q   G+GKT    + +   ++      QA+++ 
Sbjct: 27  EPTPIQELVIPKLLQG-----ERDIVGQAQTGTGKTAAFGLPLIELLDDKSPFVQAIVLT 81

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E +       ++ +  I G      + + LE      AHI++GT     D
Sbjct: 82  PTRELALQVAEEMNSLKGKKRLNIVPIYGGQSMELQLRRLEN----NAHIVVGTPGRVID 137

Query: 389 SIQYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTL--V 436
            I    L        +L   DE    G        +        +LL +AT     L   
Sbjct: 138 HINRKTLRLNKLKFMVLDEADEMLNMGFIEDIEEIIKHTNEDKRMLLFSATMPKEILNIA 197

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              + D ++  +  K    +  + +   +   D+     ++   E +    I  + +   
Sbjct: 198 KKYMKDYEVLAVKTKQLTTELTEQIYFQVREEDKFEALCRIRDMEKEFYGLIFCRTKVDV 257

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           ++    +++R          +   +HG +S   +E ++  FK     +L+AT V   GID
Sbjct: 258 DTVCNRLIDR--------GYNAEALHGDISQYQRERILKRFKAKQINMLVATDVAARGID 309

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           + D + +I  +      + +H++ GR GR  +  + I    P 
Sbjct: 310 ISDLTHVINYSLPQDPESYVHRI-GRTGRAGKEGTAITFVTPE 351


>gi|227891791|ref|ZP_04009596.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227866356|gb|EEJ73777.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 499

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 132/371 (35%), Gaps = 34/371 (9%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAV 325
            F   T  Q   I  +L           I Q   G+GKT    + +   ++      QAV
Sbjct: 27  GFEEATPIQAETIPLVLAG------NDVIGQAQTGTGKTAAFGLPVLQQLDLDLRQIQAV 80

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I++P   LA Q  E +    +  +  V+++ G      + K LE+      HI++GT   
Sbjct: 81  IISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLEQ---HTPHILVGTPGR 137

Query: 386 FQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTL 435
             D IQ           LIL   DE    G    +   +         LL +AT     L
Sbjct: 138 LLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQTLLFSATMPKEIL 197

Query: 436 VL--TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            +    + +  I KI  K      +    +     ++     +++  +  +   +  +  
Sbjct: 198 KIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLIDVQAPELTIVFGRT- 256

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+  +   E    + A IHG ++   + +V+  FKNG   +L+AT V   
Sbjct: 257 -------KRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAAR 309

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   + +   +      + +H++ GR GR     + +    P           + K 
Sbjct: 310 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKK 368

Query: 614 TEDGFLIAEED 624
             D      +D
Sbjct: 369 RMDPLKPPTQD 379


>gi|117621455|ref|YP_855288.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562862|gb|ABK39810.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 416

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 139/374 (37%), Gaps = 40/374 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
               Q+ L  + ++ PT  Q SAI  IL           +     G+GKT   ++ +   
Sbjct: 12  SPRLQQTLTELGYAAPTPVQASAIPVILAGRD------LMAGAQTGTGKTAAFVLPLLEQ 65

Query: 318 VEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +            +A+++ P   LA Q +E + +Y + T +   ++ G +  A + +AL+
Sbjct: 66  LLQNPTNDAPRPIRALVLVPTRELAIQVHESVTRYAKGTDLTSTLVYGGVSIAAQVEALK 125

Query: 370 RIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQ--RLKLTQKAT 419
                   I+I T     D ++         + L+    D     G     +  L Q   
Sbjct: 126 A----GVDILIATPGRLLDHLRQGALSLAALHHLVFDEADRMLDMGFMDEIKELLKQIPA 181

Query: 420 APHVLLMTATPIPRTLVLT--SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
               LL +AT       L+   L D ++ ++  +      ++  +  ++   ++     +
Sbjct: 182 DRQTLLFSATCDDNLFALSKVLLHDPELIEVAPRNTTAAEVEQRVYTVDGDRKLALVEHM 241

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           +  +G     I  +         R   ++          +    HG +S   +E V+  F
Sbjct: 242 LNVKGWAPALIFSRT--------RQGADKLAQQLGKAGINALAFHGDLSQGAREKVLLEF 293

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + GT + L+AT V   G+D+ D + +I           +H++ GR GR       I L+ 
Sbjct: 294 RAGTLQALVATDVAARGLDISDLNYVINMEFPFVAEDYVHRI-GRTGRAGNKGLAITLFS 352

Query: 598 PPLSKNSYTRLSVL 611
           P  +       +VL
Sbjct: 353 PEDAPLLEKVEAVL 366


>gi|120597664|ref|YP_962238.1| ATP-dependent RNA helicase DbpA [Shewanella sp. W3-18-1]
 gi|120557757|gb|ABM23684.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 458

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 153/432 (35%), Gaps = 47/432 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
             T  Q  ++  IL           I QG  GSGKT    + +   ++      Q +++ 
Sbjct: 23  EMTPIQAQSLPPILAGQDV------IGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLC 76

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+   +    + V  + G +P   +  +LE      AHII+GT     
Sbjct: 77  PTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEH----GAHIIVGTPGRIV 132

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +   +L L  +          R+       A   ++  A    +TL+ ++     I  
Sbjct: 133 DHLDRNRLDLSNL-NMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLFSATFPEQIQS 191

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFR 501
           I  K     P    +   +    + +    +  +  +   +   + E K        N +
Sbjct: 192 IA-KQIMYDPSMVKVEGNHDSLSIAQHFYHLDDDKARMQALQLLLLEHKPESAVVFCNTK 250

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              ++     E    S+  +HG +   D++  +  F N +  +L+AT V   G+D+    
Sbjct: 251 RETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALD 310

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            +   +  +     +H++ GR GR     +    Y+             L+       + 
Sbjct: 311 AVFNYHVAYDTEVHIHRI-GRTGRAGSKGAAYTFYNDQDGYKIALLEEYLEREITSESLP 369

Query: 622 EEDL--------------------KQRKEGEILG--IKQSGMPKFLIAQPEL--HDSLLE 657
            E L                    ++ + G+ILG    ++G+    + + ++  + + + 
Sbjct: 370 SESLLGSTPAAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKIQVTDYRAYVA 429

Query: 658 IARKDAKHILTQ 669
           + RK AK  L +
Sbjct: 430 VNRKVAKKALNK 441


>gi|313900312|ref|ZP_07833806.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2]
 gi|312954861|gb|EFR36535.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2]
          Length = 437

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 131/351 (37%), Gaps = 23/351 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIM 327
            PT  QE AI   LQ          +     G+GKT    I     ++       +++I+
Sbjct: 23  DPTPIQEQAIPYALQGRD------ILGCAQTGTGKTAAFSIPTIQLLKKHYKQSIRSLIV 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LA Q  E I  Y Q T I   +I G +PQ  + + L+        I++ T     
Sbjct: 77  TPTRELAIQIQENITAYAQYTTIRSAVIFGGVPQKPQERILKA----GVDILVATPGRLN 132

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D IQ   + +  + E        R+           ++       +TL  ++    +I K
Sbjct: 133 DLIQQGIIDISHI-EIFILDEADRMLDMGFLPDVKRIIAKLPKRKQTLFFSATMPSEIRK 191

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN------FR 501
           + +     +P+   + P +   E I++    + +  K   +   +++ +  N       +
Sbjct: 192 LAQS-LLHEPVSIEVTPASTTVEKIDQSLYYVDKANKKRLLLKLLQKNRVQNALVFTRTK 250

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           S   R          +  +IHG  S   ++  +  FK G  ++L+AT +   GIDV + S
Sbjct: 251 SNANRLAKYLNENGVTSGVIHGNKSQNARQQALLQFKEGKSRVLVATDIAARGIDVQELS 310

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +   +  +     +H++ GR GR       I       ++       +++
Sbjct: 311 HVFNFDIPNEAEVYVHRI-GRTGRAGRQGCAIAFSDCNEAEYVKNIEKLIR 360


>gi|328697427|ref|XP_001946984.2| PREDICTED: ATP-dependent RNA helicase p62-like isoform 1
           [Acyrthosiphon pisum]
          Length = 551

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/434 (20%), Positives = 164/434 (37%), Gaps = 50/434 (11%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIA-LLLMRKQFKKEIGIPINVEGK-----IAQKIL 266
              K+F    P  ER +Y+E+   +    + +    +  +  PI    +         ++
Sbjct: 93  PFKKEFYVPHPTIERRSYEEVDKYRTGKDITVMSSDRSPVPYPIQHFKEANFPDYVMTVI 152

Query: 267 RNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
           RN  F  PT  Q       +        M+ + Q   GSGKTL   +     +       
Sbjct: 153 RNEGFTEPTPIQAQGWPIAM----SGKNMVGVAQ--TGSGKTLGYTLPAVVHINNQEPLK 206

Query: 321 ---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
              G  A+++AP   LAQQ  +    + Q+T +    I G  P++H+ + L         
Sbjct: 207 KGDGPIALVLAPTRELAQQIQKVAGLFNQSTYLRSTCIYGGAPKSHQARDL----MNGVE 262

Query: 378 IIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMT 427
           I+I T     D ++           L+L   D     G   Q R  + Q      VL+ +
Sbjct: 263 IVIATPGRLLDFLESRATNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQVLMWS 322

Query: 428 ATPIPRTLVLTSLGDIDISKIT----EKPAGRKPIKTVII--PINRIDEVIERLKVVLSE 481
           AT       L +    D  ++        A    ++ V +     + D++++ L+ + + 
Sbjct: 323 ATWPKEVQKLANDFLSDYIQLNVGSLTLSANHNILQNVDVCQEHEKEDKLMDLLQDIANM 382

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            +    I  + + K ++  R +         +  +    IHG  S  +++ V+  F+ G 
Sbjct: 383 EENKTIIFAETKRKVDTITRKIT--------NMGARAVGIHGDKSQSERDHVLKQFRGGR 434

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   G+DV D   +I  +  +     +H++ GR GR  +  +    +    S
Sbjct: 435 ANILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRI-GRTGRSSQKGTSYAFFTHSNS 493

Query: 602 KNSYTRLSVLKNTE 615
           K +   ++VL    
Sbjct: 494 KQAKDLVAVLTEAN 507


>gi|255572248|ref|XP_002527063.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223533568|gb|EEF35307.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 650

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/378 (16%), Positives = 134/378 (35%), Gaps = 48/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-GGQ------- 323
            PT  Q  AI   L           +     GSGKT      + + +    GQ       
Sbjct: 210 KPTPVQRHAIPISLGGRD------LMACAQTGSGKTAAFCFPIISGIMKMQGQSAQRPLR 263

Query: 324 --------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                   A+I++P   L+ Q +E  +K++  T + V +  G  P   + + LER     
Sbjct: 264 GARMVYPLALILSPTRELSMQIHEEARKFSYQTGVKVVVAYGGAPINQQLRELER----G 319

Query: 376 AHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
             I++ T     D ++  ++ L +V     DE  R          +K    +   M    
Sbjct: 320 VDILVATPGRLVDLLERARVSLQMVRYLALDEADRMLDMGFEPQIRKIVEQN--DMPRPG 377

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +T++ ++    +I ++         I   +  +    ++I +    + E  K   +  
Sbjct: 378 ARQTMLFSATFPKEIQRLATDFL-FNYIFLAVGRVGSSTDLIIQRVEFVQESDKRSHLMD 436

Query: 491 QIEEKKES-------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            +  ++ +               +   +               IHG  S  ++E  + SF
Sbjct: 437 LLHAQRANGVQGKQALTLVFVETKKGADSLEHWLYVNGFPATSIHGDRSQQEREQALRSF 496

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G   +L+AT V   G+D+   + ++  +  +     +H++ GR GR  +       ++
Sbjct: 497 RSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI-GRTGRAGKSGLATAFFN 555

Query: 598 PPLSKNSYTRLSVLKNTE 615
              +  +     +++ + 
Sbjct: 556 EGNASLAMALADLMQESN 573


>gi|215426565|ref|ZP_03424484.1| hypothetical protein MtubT9_09292 [Mycobacterium tuberculosis T92]
 gi|219557147|ref|ZP_03536223.1| hypothetical protein MtubT1_07530 [Mycobacterium tuberculosis T17]
 gi|260200303|ref|ZP_05767794.1| hypothetical protein MtubT4_09273 [Mycobacterium tuberculosis T46]
 gi|289442689|ref|ZP_06432433.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46]
 gi|289569259|ref|ZP_06449486.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17]
 gi|289749796|ref|ZP_06509174.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92]
 gi|289415608|gb|EFD12848.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46]
 gi|289543013|gb|EFD46661.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17]
 gi|289690383|gb|EFD57812.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92]
          Length = 563

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/359 (21%), Positives = 131/359 (36%), Gaps = 37/359 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SPT  Q + I  ++           +     G+GKT    I M + ++      QA+++ 
Sbjct: 35  SPTAIQAATIPALMAG------SDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLV 88

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y    +Q+ V  I G    A +   L R     A +++GT     
Sbjct: 89  PTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR----GAQVVVGTPGRVI 144

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTL 435
           D ++   L        +L   DE    G    +   L++      V L +AT  P  R L
Sbjct: 145 DHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKL 204

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D        K A  + I    I + R  + +   +V+  E  +A  +  +    
Sbjct: 205 SAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDAL--TRVLEVEPFEAMIVFVRT--- 259

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E           S A I G +    +E  + + ++G   +L+AT V   G+
Sbjct: 260 -----KQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGL 314

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           DV   S ++  +  H   + +H++ GR GR     + ++   P             + T
Sbjct: 315 DVERISHVLNYDIPHDTESYVHRI-GRTGRAGRSGAALIFVSPRELHLLKAIEKATRQT 372


>gi|153800715|ref|ZP_01955301.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|227812335|ref|YP_002812345.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229522328|ref|ZP_04411744.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|298499563|ref|ZP_07009369.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
 gi|124123690|gb|EAY42433.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|227011477|gb|ACP07688.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229340313|gb|EEO05319.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|297541544|gb|EFH77595.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
          Length = 422

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 131/356 (36%), Gaps = 33/356 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQ-------- 323
           PT  Q+ AI  +LQ          +     G+GKT    + +    +E   Q        
Sbjct: 29  PTPIQQQAIPHVLQGKDV------LAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSKEI 82

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I T
Sbjct: 83  RALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLR----GGVDILIAT 138

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D      L L  V E        R+           +L   +P+ +TL  ++  D
Sbjct: 139 PGRLLDHAHVKSLFLGKV-EVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFD 197

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
             I  +  +   R PI+  + P N   E ++++   + + +K   +   I  K       
Sbjct: 198 SKIKAVAYR-IMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLV 256

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               R   +      +        I+G  S   ++  +D FK G  + LIAT V   G+D
Sbjct: 257 FTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLD 316

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     ++  +        +H++ GR GR       I L    LS +   +L  ++
Sbjct: 317 IAQLEQVVNYDMPFKAEDYVHRI-GRTGRAGLAGLAISL----LSHDEQPQLEAIE 367


>gi|315452663|ref|YP_004072933.1| ATP-dependent RNA helicase [Helicobacter felis ATCC 49179]
 gi|315131715|emb|CBY82343.1| ATP-dependent RNA helicase,DEAD box helicase family protein
           [Helicobacter felis ATCC 49179]
          Length = 469

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/363 (20%), Positives = 135/363 (37%), Gaps = 33/363 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            P+  QE AI  ILQ          I Q   G+GKT    + +   ++     +A+I+ P
Sbjct: 40  QPSPIQEKAIPVILQGRDV------IAQAQTGTGKTAAFALPIIHNLKNDRSVEALIITP 93

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I +  ++++     I G      + + LE+    +  ++I T     D 
Sbjct: 94  TRELAMQISDEIFRLGKSSRTRTICIYGGQSIRKQCELLEK----RPQVMIATPGRLLDH 149

Query: 390 IQYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT--PIPRTLVL 437
           ++  +L        +L   DE    G                 +LL +AT  P  R L  
Sbjct: 150 LKNKRLKHFNPKVVVLDESDEMLDMGFLDDIEEIFDYLPNDAQILLFSATMPPPIRDLAN 209

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
             L D     I         I      IN  +     ++++  E      I  +++ + +
Sbjct: 210 KILQDPASIHIAPANITNADISQRFYVINEHERNEAIMRLLDKENHTKSIIFMRMKREVD 269

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              R +VER              +HG M    ++  + +FK+    +L+AT V   G+D+
Sbjct: 270 ELHRFLVER--------GYKTTPLHGDMEQRARQESIKAFKSKRADVLVATDVASRGLDI 321

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            D S +   +      + +H++ GR GR  +    I L  P   K        + +T + 
Sbjct: 322 SDVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGIAITLVTPLEYKELQRMQKEIDSTIEL 380

Query: 618 FLI 620
           + I
Sbjct: 381 YEI 383


>gi|262340963|ref|YP_003283818.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272300|gb|ACY40208.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 551

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/368 (22%), Positives = 139/368 (37%), Gaps = 38/368 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  I F  PT  QE  I  +L      +    I     G+GKT    + +   V      
Sbjct: 19  LEAIGFQYPTTIQEKVIPFLLS-----SERDVIALAQTGTGKTAAFGLPIIQKVNFDLSI 73

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA I+ P   L  Q      ++++    I +  + G +    + K+L+     + HIII
Sbjct: 74  PQAFILCPTRELCVQITRDFYRFSKFLSTIKIISLYGGVSIDSQIKSLQN----KTHIII 129

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATP 430
           GT     D I+  KL        IL   DE    G ++ L             LL +AT 
Sbjct: 130 GTPGRIIDLIKRKKLHLEKIKYLILDEADEMLNMGFKEELDYIVKMLPKNRQSLLFSATM 189

Query: 431 IPRTLVLTSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAY 486
                 +      D  +I   +K      +K +   +  +++    LK +  ++ G    
Sbjct: 190 SKYMNAIARTYLTDPVEIIAGQKNIVSDGVKHIYYMVGHLNKKYSALKRIVDINPGIYGI 249

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C   +E KE     + + +N+           ++G +S   +ESVM+ F+N   + L+
Sbjct: 250 IFCETKKETKEIAEYLIKDGYNA---------DALYGDLSQTQRESVMNRFRNKNLQFLV 300

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV + + +I  N        +H+  GR GR       + + H   ++N   
Sbjct: 301 ATDVAARGLDVHNITHVINYNLPKESDIYIHR-SGRTGRAGNSGISVCIIHSKETRNLKE 359

Query: 607 RLSVLKNT 614
               +  +
Sbjct: 360 FEKRIGKS 367


>gi|261839104|gb|ACX98869.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 52]
          Length = 492

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNADITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ + + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRTSIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|183984161|ref|YP_001852452.1| cold-shock DEAD-box protein, DeaD [Mycobacterium marinum M]
 gi|183177487|gb|ACC42597.1| cold-shock DEAD-Box protein, DeaD [Mycobacterium marinum M]
          Length = 571

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/359 (20%), Positives = 135/359 (37%), Gaps = 35/359 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SPT  Q + I  ++           +     G+GKT    I + + ++      QA+++A
Sbjct: 35  SPTGIQAATIPALMAG------SDVVGLAQTGTGKTAAFAIPILSKIDTTSTATQALVLA 88

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y  + +++ V  + G    A +   L R     A +++GT     
Sbjct: 89  PTRELALQVAEAFSRYGAHLSRLNVLPVYGGSSYAIQLAGLRR----GAQVVVGTPGRVI 144

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTL 435
           D ++   L        +L   DE    G  + +   L++      V L +AT  P  R +
Sbjct: 145 DHLERRTLDLSRVDYLVLDEADEMLTMGFAEDVERILSETPEYKQVALFSATMPPAIRKI 204

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D    K   K A  + I    I +    ++    +V+  E  +A  +  +    
Sbjct: 205 TTRYLHDPLEVKSEAKTATAENISQRYIQVAGPRKMDALTRVLEVEPFEAMIVFVRT--- 261

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E           S A I+G +    +E  + + ++G   +L+AT V   G+
Sbjct: 262 -----KQATEEVAEKLRARGFSAAAINGDIPQGQRERTITALRDGGIDILVATDVAARGL 316

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           DV   S ++  +  H   + +H++ GR GR     + +L   P             + T
Sbjct: 317 DVERISHVLNYDIPHDTESYVHRI-GRTGRAGRSGAALLFVSPRERHLLKLIEKATRQT 374


>gi|93006205|ref|YP_580642.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
 gi|92393883|gb|ABE75158.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
          Length = 552

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 133/354 (37%), Gaps = 26/354 (7%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVI 326
           PT  Q  AI   L           +L    GSGKT   +I +   +          +A+I
Sbjct: 61  PTPIQAQAIPFALAGRD------LLLSAQTGSGKTAAFVIPVLDRLSRATSFDKLTKALI 114

Query: 327 MAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           + P   LAQQ ++ ++ Y+++   +    + G  P   +  AL++       +I+ T   
Sbjct: 115 LTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQITALKK----GVQVIVATPGR 170

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D I   ++ L  + E        R+     A     +L  A    +T++ ++  D  +
Sbjct: 171 LLDHINAGRVDLSSL-EILVLDEADRMLDMGFADDISDILRAAPTDRQTIMCSATWDGPV 229

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RS 502
            KI           ++ +    I+E +        + +    I  Q + ++   F   + 
Sbjct: 230 GKIAASFTKNPERVSIKVESAHIEEKVYYCDDFDHKNRLLDKIVCQQDMEQIIIFAATKR 289

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             E+     +      + +HG +    +  ++   +NG  K+L+AT V   G+D+   S 
Sbjct: 290 STEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKVKILVATDVAARGLDIPAISH 349

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +I  +        +H++ GR GR       I L     S +   +L+ +    D
Sbjct: 350 VINYDLPRQTEDYVHRI-GRCGRAGRTGIAISLC----SMDDRPQLNAINRYLD 398


>gi|326563433|gb|EGE13698.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 12P80B1]
          Length = 581

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 130/351 (37%), Gaps = 22/351 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA------AVEAGGQAV 325
           +PT  Q  AI   L           +L    GSGKT   ++ +         +E   QA+
Sbjct: 40  TPTPIQAKAIPHALNGRD------LLLSAQTGSGKTAAFVLPVLDKMSRKPTIEKHVQAL 93

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           I+ P   LA Q  + +++Y    + +  + + G  P   + +AL++       +II T  
Sbjct: 94  ILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKK----GVQVIIATPG 149

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D ++  ++ L  +D         R+     A     +L       +T++ ++  D  
Sbjct: 150 RLIDHMREGRVDLSKLD-MLILDEADRMLDMGFADDIKEILQNTPQTRQTVMSSATWDGA 208

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
           + KI E+        ++ +    IDE +        +      +    + K+   F   +
Sbjct: 209 VGKIAERFTVNPEKVSIKVESAHIDESVYYCDDFNHKNNILLQVLNNPKIKQAVIFAATK 268

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              E+  +           +HG +    +  ++   K+G C +L+AT V   GID+   S
Sbjct: 269 MSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARGIDISAIS 328

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +I  +        +H++ GR GR       + L     ++        LK
Sbjct: 329 HVINYDLPRQVEDYVHRI-GRCGRAGRTGVAVNLCSIDDNRQLEHINRYLK 378


>gi|197104230|ref|YP_002129607.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
 gi|196477650|gb|ACG77178.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
          Length = 470

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 128/355 (36%), Gaps = 26/355 (7%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------A 324
           PT  Q  AI  ++           +     G+GKT    + +   +    +         
Sbjct: 25  PTPIQAQAIPGVMAGRD------LLGIAQTGTGKTAAFALPILHRLAEDRRPAPRRSARV 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q  E  K Y ++  + V +I G +    + +AL     G   +++ T  
Sbjct: 79  LVLSPTRELATQIAESFKAYGRHLGLSVAVIFGGVKYGPQMRALA----GGVDVLVATPG 134

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D +Q   ++L  V+        Q L +        ++        + L  ++    +
Sbjct: 135 RLIDHLQEKSVVLEGVETFVLDEADQMLDMGFIVPIRRIVKFL-PKRRQNLFFSATMPAE 193

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE------KKES 498
           I K+T +     P+K  + P +   E I +  + + + +K   +    ++         +
Sbjct: 194 IEKLTGEILNPNPLKVTVTPPSTTVERINQRVLFVEQQRKRALLAELFDDASFKRVIVFT 253

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +   +R     E      A IHG  S   +E  + +FK G  + L+AT +   GID+ 
Sbjct: 254 RTKRGADRVARGLEQVGVEAASIHGDKSQGQRERALAAFKAGDVRALVATDIAARGIDID 313

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
             S ++     +   A +H++ GR  R     S +                V K 
Sbjct: 314 AVSHVVQFELPNVPEAYVHRI-GRTARAGADGSAVAFCADDERNLLKDIEKVTKQ 367


>gi|109947876|ref|YP_665104.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba]
 gi|109715097|emb|CAK00105.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba]
          Length = 494

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 130/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 44  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 97

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 98  TRELAMQISDEIFKLGKHTKTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 153

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 154 LKNDRIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 203

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---K 496
                I K+ +K     PIK  I P N  +  I +   V++E +++  I   ++ +   K
Sbjct: 204 -MPEPIKKLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMHLLDTQAPEK 261

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+   S       +HG M   D+ + + +FK     +L+AT V   
Sbjct: 262 SIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 321

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 322 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 365


>gi|153824344|ref|ZP_01977011.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           MZO-2]
 gi|254226198|ref|ZP_04919793.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V51]
 gi|125621300|gb|EAZ49639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V51]
 gi|149741898|gb|EDM55927.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           MZO-2]
          Length = 422

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 131/356 (36%), Gaps = 33/356 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQ-------- 323
           PT  Q+ AI  +LQ          +     G+GKT    + +    +E   Q        
Sbjct: 29  PTPIQQQAIPHVLQGKDV------LAGAQTGTGKTAAFGLPLIQRFIEQPWQRETNSKEI 82

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I T
Sbjct: 83  RALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLR----GGVDILIAT 138

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D      L L  V E        R+           +L   +P+ +TL  ++  D
Sbjct: 139 PGRLLDHAHVKSLFLGKV-EVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFD 197

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
             I  +  +   R PI+  + P N   E ++++   + + +K   +   I  K       
Sbjct: 198 SKIKAVAYR-IMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLV 256

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               R   +      +        I+G  S   ++  +D FK G  + LIAT V   G+D
Sbjct: 257 FTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLD 316

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     ++  +        +H++ GR GR       + L    LS +   +L  ++
Sbjct: 317 IAQLEQVVNYDMPFKAEDYVHRI-GRTGRAGLAGLAVSL----LSHDEQPQLEAIE 367


>gi|307823524|ref|ZP_07653753.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307735509|gb|EFO06357.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 419

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 122/343 (35%), Gaps = 28/343 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +           + 
Sbjct: 23  TPSPIQSQAIPAVLGGHDV------LAAAQTGTGKTAGFTLPILHRLSQKAYGNNRPVRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +I+ P   LA Q  E + KY  +    +  E++ G +    +   L     G   I++ T
Sbjct: 77  LILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMMRLR----GGVDILVAT 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D +    + L  V E        R+           ++       + L+ ++   
Sbjct: 133 PGRLLDLVNQNAVKLDQV-ETLILDEADRMLDMGFIRDIRKIIAFLPKKRQNLLFSATFS 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
            DI K+T       PIK  + P N   E++E++  ++++  K   +C  I+E        
Sbjct: 192 EDIRKLTT-GLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHLIKEHDWQQVLV 250

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +    R            A IHG  S   + S +  FK G  ++L+AT V   GID
Sbjct: 251 FTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEIRVLVATDVAARGID 310

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +     ++           +H++ GR GR  E    I L    
Sbjct: 311 INLLPHVVNFELPRAPEDYVHRI-GRTGRAGEEGQAISLVSHD 352


>gi|300173740|ref|YP_003772906.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299888119|emb|CBL92087.1| ATP-dependent RNA helicase/Autoaggregation-mediating protein
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 538

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/341 (19%), Positives = 125/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE  I   L           I Q   G+GKT    + +   ++      QA+I++P 
Sbjct: 25  TPIQEKTIPLTLAGKDV------IGQAQTGTGKTAAFGLPILEHIDLDNKNIQALIVSPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E +KK  ++  + V+++ G      + + L+        I++GT     D I
Sbjct: 79  RELAIQTAEELKKLGRDKHVDVQVVFGGADIRRQIQNLKS----HPQILVGTPGRLLDHI 134

Query: 391 QYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTLVLT 438
                       L+L   DE    G  + +   +         LL +AT  P  + + + 
Sbjct: 135 NRKTVKIEHVKTLVLDEADEMLNMGFLEDIESIIKNTPAERQTLLFSATMPPAIKRIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  +I  K      +    + +   ++     ++   +  K   +  +       
Sbjct: 195 FMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIFDVQAPKLAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  VE      E      + +HG ++   +  V+  FK+    +L+AT V   G+DV 
Sbjct: 249 --KRRVEELARGLEARGYHASGLHGDLTQQMRSRVLAQFKSHEINILVATDVAARGLDVK 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           D S +   +      + +H++ GR GR       +    P 
Sbjct: 307 DVSHVYNFDIPQDPESYVHRI-GRTGRAGAKGVSVTFVSPN 346


>gi|229526712|ref|ZP_04416116.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
 gi|229336870|gb|EEO01888.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
          Length = 422

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 131/356 (36%), Gaps = 33/356 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQ-------- 323
           PT  Q+ AI  +LQ          +     G+GKT    + +    +E   Q        
Sbjct: 29  PTPIQQQAIPHVLQGKDV------LAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSKEI 82

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I T
Sbjct: 83  RALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLR----GGVDILIAT 138

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D      L L  V E        R+           +L   +P+ +TL  ++  D
Sbjct: 139 PGRLLDHAHVKSLFLGKV-EVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFD 197

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
             I  +  +   R PI+  + P N   E ++++   + + +K   +   I  K       
Sbjct: 198 SKIKAVAYR-IMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLV 256

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               R   +      +        I+G  S   ++  +D FK G  + LIAT V   G+D
Sbjct: 257 FTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLD 316

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     ++  +        +H++ GR GR       + L    LS +   +L  ++
Sbjct: 317 IAQLEQVVNYDMPFKAEDYVHRI-GRTGRAGLAGLAVSL----LSYDEQPQLEAIE 367


>gi|256829787|ref|YP_003158515.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578963|gb|ACU90099.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 545

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/354 (20%), Positives = 134/354 (37%), Gaps = 25/354 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------AGGQAV 325
           +PT  Q  AI  IL           + +   G+GKT    + +   +          +A+
Sbjct: 23  APTAIQAQAIPVILAGRD------ILARAQTGTGKTDAFGLPIVQILGLTRGNGHHPRAL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E IK Y +   +   +  G +    +   LER       I++ T   
Sbjct: 77  ILTPTRELALQVGESIKAYARKVSLRCTVAFGGVRIEPQIARLER----GIDILVATPGR 132

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D      L L  + E   F    R+     +   + +L     + RT++ ++     I
Sbjct: 133 LLDLASQEHLSLASI-EFLVFDEADRMLDLGFSGEINAILDLLPTVRRTMLFSATYTPQI 191

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF----- 500
             +  K    KP    I P     E +++    +++  K   +   IE++K+        
Sbjct: 192 KALAAK-MLDKPEYIEITPDTAAAEAVQQKVHHVNKDNKLPLLLHLIEKQKQDRILVFAR 250

Query: 501 -RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R+   R          S+A +HG  S   ++  ++ FK+G   +L+AT V   G+D+ +
Sbjct: 251 TRTWANRLTDKLAAHGISVAALHGSKSQSLRKRTLEEFKDGKIHILVATDVAARGLDISN 310

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
             +++  +  +     +H++ GR GR       + L  P           +L++
Sbjct: 311 LPLVVNYDIPNSPEDYVHRI-GRTGRAGVSGIAVSLVSPEERNLLLAIEDLLRH 363


>gi|255580688|ref|XP_002531166.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223529236|gb|EEF31209.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 585

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 135/375 (36%), Gaps = 45/375 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q +AI  IL           +     GSGKT      + + +          G +
Sbjct: 150 KPTPVQRNAIPIILAGRD------LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGPR 203

Query: 324 -----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A+I++P   L+ Q ++  KK++  T + V +  G  P   + + LER       I
Sbjct: 204 TVYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELER----GVDI 259

Query: 379 IIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T     D ++  ++ L ++     DE  R          Q       + M      +
Sbjct: 260 LVATPGRLVDLLERARISLQMIRYLALDEADRMLDMGFEP--QIRKIVEQMDMPPPGRRQ 317

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    +I ++         I   +  +    ++I +    + E  K   +   + 
Sbjct: 318 TMLFSATFPKEIQRLASDFLA-SYIFLAVGRVGSSTDLIVQRVEFVHETDKRSHLMDLLH 376

Query: 494 EKKESNF-------------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            ++E+               +   +   +           IHG  +  ++E  + SFK+G
Sbjct: 377 AQRETEINIKHSLTLVFVETKKGADSLENWLCVNGFPATTIHGDRTQQEREMALRSFKSG 436

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+D+   + ++  +  +     +H++ GR GR  +       ++   
Sbjct: 437 KTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI-GRTGRAGKTGLATAFFNENN 495

Query: 601 SKNSYTRLSVLKNTE 615
              +     +++   
Sbjct: 496 LSLARPLADLMQEAN 510


>gi|209545432|ref|YP_002277661.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533109|gb|ACI53046.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 555

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 138/374 (36%), Gaps = 38/374 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
               Q+ + ++ +  PT  Q  AI  +L           +     G+GKT    + M   
Sbjct: 57  SDPIQRAIDDMGYRHPTPIQAQAIPYVLMGRDV------LGVAQTGTGKTASFTLPMLEI 110

Query: 318 VEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +          +++I+ P   LA Q  E    Y +  ++   ++ G    A ++  L R 
Sbjct: 111 LSGSRARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMAEQKDVLNR- 169

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLM 426
                 ++I T     D  +   L+L       +DE  R      +   +K      ++ 
Sbjct: 170 ---GVDVLIATPGRLIDLFERGGLLLTQTRLLVIDEADRMLDMGFIPDIEK------IVA 220

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
             +P+ +TL  ++    +I ++ +         TV  P + +   IE   VV+ E  K  
Sbjct: 221 MLSPVRQTLFFSATMAPEIRRLADMFLQNPKEITVSRPSS-VATTIETGLVVVDEADKRR 279

Query: 487 WICPQIEEKKESNFRSVVER-------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +   + +    N      R       + SL +H   S   +HG +    + + ++ FK+
Sbjct: 280 VLRRMLRDDAVQNAIVFCNRKRDVDVLYKSLVKH-DFSAGALHGDLPQSVRFATLERFKS 338

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  K+L+ + V   GID+   S +   +        +H++ GR GR         L  P 
Sbjct: 339 GELKILVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRI-GRTGRAGRSGHAYSLATPY 397

Query: 600 LSKNSYTRLSVLKN 613
               +    +++ +
Sbjct: 398 DRALAEAIETLIGH 411


>gi|148379972|ref|YP_001254513.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153932857|ref|YP_001384271.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936987|ref|YP_001387810.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           Hall]
 gi|148289456|emb|CAL83553.1| putative ATP-dependent RNA helicase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928901|gb|ABS34401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932901|gb|ABS38400.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. Hall]
          Length = 376

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 126/369 (34%), Gaps = 39/369 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE +I  I            I +   G+GKTL  L+ M   +       Q +I+ 
Sbjct: 24  EPTPIQEESIMLIKSG------NDVIAEAQTGTGKTLAFLLPMFENISPDIDAIQGLIIT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  +   + +    G      + K L        H++I T     D
Sbjct: 78  PTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKL----KNNIHLVIATPGRLLD 133

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPRT--LV 436
            +            L+L   DE    G +   R  +         L  +AT       L 
Sbjct: 134 HLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATMNSEVKKLA 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
             ++ D  +  I ++    K IK V+I      +  +  K++  E      I  +     
Sbjct: 194 YKNMRDPKLIIIEKEEVTLKNIKQVLIETTDRRKQEDLCKILDEENPFMAIIFCRT---- 249

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+           +   +HG ++   +E +M SFKN   + LIAT V   G+D
Sbjct: 250 ----KRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + +   +      + +H++ GR GR  E     L   P   +        +K    
Sbjct: 306 ITGVTHVFNYDIPENAESYIHRI-GRTGRAGEKGYTFLFVAPKDEQTLGMIEKEIK---- 360

Query: 617 GFLIAEEDL 625
            F I    L
Sbjct: 361 -FKIPRRAL 368


>gi|145349996|ref|XP_001419411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579642|gb|ABO97704.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 394

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 121/354 (34%), Gaps = 37/354 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            P+  Q  AI  IL           +   + GSGKT    I M              G  
Sbjct: 54  KPSPIQAQAIPVILSGRDV------LGCAETGSGKTAAFSIPMIQHALNQAPLRQGDGPY 107

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           A++MAP   LAQQ     K +T+++      II G    + +R AL         I++ T
Sbjct: 108 AIVMAPTRELAQQIEAEAKTFTRSSKGFRTAIIVGGTNMSEQRGALRS----GVQIVVAT 163

Query: 383 HALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP 432
                D +Q           ++L   D     G   Q R  L         LL +AT   
Sbjct: 164 PGRLIDHLQQGNTNLSRVSFVVLDEADRMLDMGFEPQIREVLMNLPKPHQTLLFSATMPS 223

Query: 433 RTLVLTSLGDIDISKI-----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
               L S       K+     +   A        ++   ++D ++  L     E  K   
Sbjct: 224 EVEALASDYLHKPVKVKVGTTSAPTANVSQHLEKVVDAEKVDRLVTMLIGEQREAMKLGQ 283

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             P      E   R+  +    L        A +HG  S  ++E+ +  +K G C +L+A
Sbjct: 284 DMPMTVIFVERKNRA--DEIAELLNAENVPAAALHGGRSQGEREAALHDYKTGRCSVLVA 341

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           T V   G+DV   + ++  +        +H++ GR GR          Y    S
Sbjct: 342 TDVAARGLDVKGVAHVVNLDLPRNFEDYVHRI-GRTGRAGMSGRSTSFYTDRDS 394


>gi|325091997|gb|EGC45307.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus H88]
          Length = 544

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/367 (19%), Positives = 137/367 (37%), Gaps = 42/367 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q       L           +   + GSGKTL   +     + A        G   
Sbjct: 149 PTAIQAQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIV 202

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T  
Sbjct: 203 LVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDLTR----GVEVCIATPG 258

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP-- 432
              D ++  K        L+L   D     G + +++    Q        + +AT     
Sbjct: 259 RLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMWSATWPKDV 318

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIP----INRIDEVIERLKVVLSEGKKAYWI 488
           R L    L D     I           T I+       + D + + L  ++ + K +  +
Sbjct: 319 RQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHLDRIMEDNKHSKVL 378

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       R   +    L +    +++I HG     +++ V++ FK G   +++AT
Sbjct: 379 IFT------GTKRVADDITRFLRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVAT 431

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV D + ++  +  +     +H++ GR GR     + I L+    +K +   +
Sbjct: 432 DVASRGIDVRDITHVLNYDYPNNSEDYVHRI-GRTGRAGAKGTAITLFTTDNAKQARDLV 490

Query: 609 SVLKNTE 615
           ++L  ++
Sbjct: 491 AILSESK 497


>gi|260223703|emb|CAX28486.1| ATP-dependent DNA helicase [Candidatus Phlomobacter fragariae]
          Length = 160

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 12/170 (7%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MR   L+ +  PL++  GVG   +  L+KI            DLLF+ P  + D+     
Sbjct: 1   MRGKLLDAI--PLTSLNGVGTSQAEKLNKI------GLRTIQDLLFHLPLRYEDQTQLYT 52

Query: 61  ISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEG 120
           IS++     VT++G I Q     L +RR     ++DG+G +TL FF   T  +KN    G
Sbjct: 53  ISDVQPGCSVTVSGEILQTKIV-LGRRRMMTSQISDGSGTLTLRFFNFSTA-IKNSLAVG 110

Query: 121 RKITVTGKIKKLKNRIIMVHPHYIFHNSQD--VNFPLIEAVYSLPTGLSV 168
           + +   G+I++      ++HP Y    + D       +  +Y    G   
Sbjct: 111 KYVIAYGEIRRGNLGPEIIHPEYKIKPNADHIELQDTLTPIYPTTEGTRQ 160


>gi|238749573|ref|ZP_04611078.1| ATP-independent RNA helicase dbpA [Yersinia rohdei ATCC 43380]
 gi|238712228|gb|EEQ04441.1| ATP-independent RNA helicase dbpA [Yersinia rohdei ATCC 43380]
          Length = 504

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/459 (19%), Positives = 175/459 (38%), Gaps = 58/459 (12%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + ++  T  Q +A+  IL     +       +   GSGKT    I +   +  G   
Sbjct: 63  LNELGYTEMTPVQAAALPAILNGQDVR------AKAKTGSGKTAAFGIGVLDKIAVGEFV 116

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  + TQ I +  + G  P  H+  +L        HI++
Sbjct: 117 TQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHA----PHIVV 172

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   LIL  + +        R+     A A   ++    P  +TL+ ++ 
Sbjct: 173 GTPGRIQEHLRKKTLILDDL-KILVLDEADRMLDMGFADAIDDVISYTPPQRQTLLFSAT 231

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I +I+ +   R+P+   +   +    + +       E +    I      + E   
Sbjct: 232 YPQGIEQISAR-VQRQPVNVEVDDGDEAPAIEQVFFETTREKRLPLLISVLSHYQPESCV 290

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +   +      E    S+  +HG +   D++ V+  F N +C++L+AT V   G+
Sbjct: 291 VFCNTKKDCQNVYEALESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAARGL 350

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN-- 613
           D+ D ++++           +H++ GR GR       + L  P     ++     L+   
Sbjct: 351 DIKDLALVVNFELAFDPEIHVHRI-GRTGRAGMSGLAVSLCTPQEMTRAHAIEDYLQMKL 409

Query: 614 -----------------------TEDGFLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQ 648
                                    DG   A    K R  G+ILG     +G+    + +
Sbjct: 410 KWTPADQVSRSANTMLEPDMVTLCIDGGRKA----KIR-PGDILGALTGDAGLTAADVGK 464

Query: 649 PELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            ++    + + I +  AK  L Q      ++G++ +  L
Sbjct: 465 IDMFPVHAYVAIRKSCAKRALAQL-QQGKIKGKNCKARL 502


>gi|222151982|ref|YP_002561142.1| hypothetical protein MCCL_1739 [Macrococcus caseolyticus JCSC5402]
 gi|222121111|dbj|BAH18446.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 498

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 82/426 (19%), Positives = 153/426 (35%), Gaps = 50/426 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGG 322
           L  + F  PT  Q  +I   +           + Q   G+GKT    I +   V+   G 
Sbjct: 17  LEKLGFTEPTPIQMDSIPHTMAGRDV------LGQAQTGTGKTGAFGIPLIEKVKGREGI 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q++I+AP   LA Q  E +K +++   I V  + G MP   + + L++    +  I++GT
Sbjct: 71  QSLILAPTRELAVQVAEQLKAFSRGQGIQVTTVFGGMPIDRQIRELKK----KPQIVVGT 126

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +    L        IL   DE    G    ++                   +T
Sbjct: 127 PGRVIDHLNRRTLKTEDINTLILDEADEMMNMGFIDDMRFIMDKLPKEN--------RQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I ++ +K   + P+    +  N  D  IE    ++ E +K       ++ 
Sbjct: 179 MLFSATMPKAIQELVQKFM-KNPVIVKTMTNNDSDPSIEEFYTIVKELEKFDTFTNFLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +      F     R + L     S       +HG ++   +  V+  FKN    +L+AT
Sbjct: 238 HRPELAIVFGRTKRRVDELTSALISKGYRAEGLHGDITQAKRLEVLKKFKNDQIDILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+   + +   +      +  H++ GR GR  +    I   +P          
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDVESYTHRI-GRTGRAGKHGMAISFVNPVEMDYIRQIE 356

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIAR--KDAKHI 666
                         + L+    GE++  ++  +   + A  E        AR    AK +
Sbjct: 357 KAKNRQ-------MQALRPPTPGEVMKAREQDVKSKVKAWVEADTE----ARIESIAKEL 405

Query: 667 LTQDPD 672
           + +  D
Sbjct: 406 IEEYGD 411


>gi|145594638|ref|YP_001158935.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           tropica CNB-440]
 gi|145303975|gb|ABP54557.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 579

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/347 (22%), Positives = 124/347 (35%), Gaps = 39/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-----AVI 326
            PT  Q  AI  +L           + Q   G+GKT    + M   + A        A++
Sbjct: 43  EPTPIQREAIPPLLAGRD------LLGQAATGTGKTAAFALPMLQRMPANRSTTNPVALV 96

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   +Y +     V  I G  P   + +AL+        +++ T    
Sbjct: 97  LVPTRELAVQVSEAFHRYGKELGARVLPIYGGQPIGRQLRALDA----GVDVVVATPGRA 152

Query: 387 QDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLV 436
            D I    L L  V        DE    G  + +   L         +L +AT   R   
Sbjct: 153 LDHIARGTLRLGDVGTVVLDEADEMLDMGFAEDIEAILEHAPEQRQTVLFSATMPARIDG 212

Query: 437 LTSLGDIDISKI---TEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           +      D  +I    EKP   +   ++     ++R  +     +V+  E   A  +  +
Sbjct: 213 MARAHLTDPIRILIAREKPVAGEAPRVRQSAYLVSRAHKPAALGRVLDVESPTAAIVFCR 272

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    R  V+R              +HG MS   ++ VM   + GT  LL+AT V 
Sbjct: 273 --------SREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVATDVA 324

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             G+DV   S ++  +      + +H++ GRVGR       I L  P
Sbjct: 325 ARGLDVEQLSHVVNYDVPSAPESYVHRI-GRVGRAGREGVAITLAEP 370


>gi|113954045|ref|YP_730263.1| superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
 gi|113881396|gb|ABI46354.1| Superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
          Length = 601

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 132/343 (38%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q++AI +++           + Q   G+GKT    + +   ++        +++A
Sbjct: 70  EPSPIQKAAIPELMLGRD------LVGQAQTGTGKTAAFALPLLERLQGDSPLPSVLVLA 123

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  K Y+  +  + V  I G      +  AL R       +++GT     
Sbjct: 124 PTRELAMQVAEAFKAYSAGHPHLNVLAIYGGSDFRSQINALRR----GVDVVVGTPGRVM 179

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVL 437
           D ++           L+L   DE  R G    ++    Q      V+L +AT       L
Sbjct: 180 DHMRQGTLNTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQERQVVLFSATMPNEIRRL 239

Query: 438 TSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           +     + ++IT   K    + I+   I +    ++    +V+ +   +   I  +    
Sbjct: 240 SKRYLREPAEITIKTKDKEARRIRHRCITMQNSHKLEALNRVLEAVTGEGVIIFART--- 296

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +++        E     +A+++G +    +E  ++  + GT  +L+AT V   G+
Sbjct: 297 -----KAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNILVATDVAARGL 351

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV    ++I  +      A +H++ GR GR       IL   P
Sbjct: 352 DVDRIGLVINYDMPFDSEAYVHRI-GRTGRAGRSGDAILFITP 393


>gi|298704856|emb|CBJ28373.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 519

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 131/365 (35%), Gaps = 37/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       L        M+ I     GSGKTL  L+     + A        G  
Sbjct: 148 APTPIQSQGWPMAL----LGRDMVGI--SATGSGKTLAFLLPAMIHINAQPYLEQGDGPI 201

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  E   K+ ++++I    + G +P+  +   L R       I+I T 
Sbjct: 202 VLVVAPTRELAVQIKEECDKFGRSSEIKNTCVYGGVPKRIQVNDLNR----GVEIVIATP 257

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 258 GRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKE 317

Query: 434 T--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L    L       +             II           L   L +      +   
Sbjct: 318 VQALARDFLHHYYQVTVGSLELAANKDIKQIIECTEDFNKYRSLSKHLQQHGHNGKVLVF 377

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +E KK  +  +   R +            IHG  +  +++ V+  FK G  ++L+AT V 
Sbjct: 378 VETKKGCDALTRSLRQDGYQAR------CIHGDKTQEERDYVLKDFKGGNFQVLVATDVA 431

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D  ++I  +  +     +H++ GR GR       +  +    S+N    + +L
Sbjct: 432 ARGLDVKDIQMVINFDFPNNMEDYIHRI-GRCGRAGAKGVAVSFFGSKNSRNGRELIKIL 490

Query: 612 KNTED 616
             +E+
Sbjct: 491 TESEN 495


>gi|229020923|ref|ZP_04177614.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273]
 gi|229026894|ref|ZP_04183218.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272]
 gi|228734397|gb|EEL85067.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272]
 gi|228740374|gb|EEL90681.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273]
          Length = 481

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 137/371 (36%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L L  +        DE    G   Q   +  +     + ++ +  +P
Sbjct: 129 TPGRVLDHIEKGTLSLACLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLP 188

Query: 433 RTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
             +   S   +D     +I         I+  +      +++     V   E   +  I 
Sbjct: 189 EDVEKLSRKYMDSPTHIEIKAAGITTDKIEHTLFETREEEKLSLLKDVTTIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  F+          +        IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVFKQ--------LDRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNKGKAITFITPYENRFLEEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040059|gb|ACT56855.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 465

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 141/368 (38%), Gaps = 40/368 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q   I  +LQ    ++ +  I Q   G+GKT   ++ M   +E G       + +
Sbjct: 23  KPTPIQIKTIPLVLQ----RHDVCGIAQ--TGTGKTASFVLPMLTILEKGRARVRMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  +  +KY +N  + V ++ G +P   + K LER     A ++I T   
Sbjct: 77  ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER----GADVLICTPGR 132

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D     KL++  +     DE  R      +   Q  T       +  P   +TL+ ++
Sbjct: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-------SLVPFTRQTLLFSA 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               ++ K++E    + P +  +   +   E IE   V             Q   + +  
Sbjct: 186 TMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244

Query: 500 FRSVVERFNSLH---------EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            ++ +   N            E    S+  IHG +    +  ++ +FK GT +L++A+ +
Sbjct: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D   +   +  +     +H++ GR GR         L      K+      +
Sbjct: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRI-GRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363

Query: 611 LKNTEDGF 618
           ++   D  
Sbjct: 364 IEKKVDWL 371


>gi|153830439|ref|ZP_01983106.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           623-39]
 gi|229514213|ref|ZP_04403674.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|254285788|ref|ZP_04960751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           AM-19226]
 gi|148874080|gb|EDL72215.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           623-39]
 gi|150424285|gb|EDN16223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           AM-19226]
 gi|229348193|gb|EEO13151.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|327485774|gb|AEA80180.1| ATP-dependent RNA helicase VCA0768 [Vibrio cholerae LMA3894-4]
          Length = 422

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 131/356 (36%), Gaps = 33/356 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQ-------- 323
           PT  Q+ AI  +LQ          +     G+GKT    + +    +E   Q        
Sbjct: 29  PTPIQQQAIPHVLQGKDV------LAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSKEI 82

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I T
Sbjct: 83  RALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLR----GGVDILIAT 138

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D      L L  V E        R+           +L   +P+ +TL  ++  D
Sbjct: 139 PGRLLDHAHVKSLFLGKV-EVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFD 197

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
             I  +  +   R PI+  + P N   E ++++   + + +K   +   I  K       
Sbjct: 198 SKIKAVAYR-IMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLV 256

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               R   +      +        I+G  S   ++  +D FK G  + LIAT V   G+D
Sbjct: 257 FTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLD 316

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     ++  +        +H++ GR GR       + L    LS +   +L  ++
Sbjct: 317 IAQLEQVVNYDMPFKAEDYVHRI-GRTGRAGLAGLAVSL----LSHDEQPQLEAIE 367


>gi|15601523|ref|NP_233154.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121590875|ref|ZP_01678199.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121728661|ref|ZP_01681679.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V52]
 gi|147671636|ref|YP_001215545.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395]
 gi|153818645|ref|ZP_01971312.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC
           8457]
 gi|153820657|ref|ZP_01973324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           B33]
 gi|229506074|ref|ZP_04395583.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229510069|ref|ZP_04399549.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229605606|ref|YP_002876310.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254849928|ref|ZP_05239278.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|255746472|ref|ZP_05420419.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262152368|ref|ZP_06028501.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
 gi|262168609|ref|ZP_06036305.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|9658191|gb|AAF96666.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547282|gb|EAX57403.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121629072|gb|EAX61518.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V52]
 gi|126510798|gb|EAZ73392.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC
           8457]
 gi|126521700|gb|EAZ78923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           B33]
 gi|146314019|gb|ABQ18559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           O395]
 gi|227015171|gb|ACP11380.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
 gi|229352514|gb|EEO17454.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229356425|gb|EEO21343.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229372092|gb|ACQ62514.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254845633|gb|EET24047.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|255736226|gb|EET91624.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262023138|gb|EEY41843.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262030819|gb|EEY49450.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
          Length = 422

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 131/356 (36%), Gaps = 33/356 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQ-------- 323
           PT  Q+ AI  +LQ          +     G+GKT    + +    +E   Q        
Sbjct: 29  PTPIQQQAIPHVLQGKDV------LAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSKEI 82

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I T
Sbjct: 83  RALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLR----GGVDILIAT 138

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D      L L  V E        R+           +L   +P+ +TL  ++  D
Sbjct: 139 PGRLLDHAHVKSLFLGKV-EVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFD 197

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
             I  +  +   R PI+  + P N   E ++++   + + +K   +   I  K       
Sbjct: 198 SKIKAVAYR-IMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLV 256

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               R   +      +        I+G  S   ++  +D FK G  + LIAT V   G+D
Sbjct: 257 FTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLD 316

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     ++  +        +H++ GR GR       + L    LS +   +L  ++
Sbjct: 317 IAQLEQVVNYDMPFKAEDYVHRI-GRTGRAGLAGLAVSL----LSHDEQPQLEAIE 367


>gi|260574781|ref|ZP_05842784.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
 gi|259023198|gb|EEW26491.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
          Length = 537

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 152/400 (38%), Gaps = 52/400 (13%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + ++ ++ Q +L     +PT  Q  AI   L           +     G+GKT   ++ M
Sbjct: 7   LALDPRVLQAVLEAGYETPTPIQAQAIPHALAGRDV------LGIAQTGTGKTASFVLPM 60

Query: 315 AAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
              +  G       +++++ P   LA Q  E  + Y + +++   ++ G +    + K +
Sbjct: 61  ITLLGQGRAKARMPRSLVLCPTRELAAQVAENFETYAKYSKLTKALLIGGVSFGEQDKLI 120

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R       ++I T     D  +  KL+L     ++VDE  R      +   ++      
Sbjct: 121 DR----GVDVLIATPGRLLDHHERGKLLLTGVQIMVVDEADRMLDMGFIPDIER------ 170

Query: 424 LLMTATPI-PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            + + TP   +T   ++    +I +IT        +K  +       E IE+  + ++  
Sbjct: 171 -IFSLTPFTRQTFFYSATMAPEIERITNTFLS-NAVKIEVARQATSSETIEQALIQITPT 228

Query: 483 KKAY-------WICPQIEEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           +K          +   I  + E         N +  V+  +   +    + + IHG +  
Sbjct: 229 RKDRSFADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVSKSLKQHGFNASPIHGDLDQ 288

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +   +D F++GT  LL+A+ V   G+D+   S +   +        +H++ GR GR  
Sbjct: 289 SVRTRTLDGFRDGTVHLLVASDVAARGLDIPAVSHVFNFDVPSHPEDYVHRI-GRTGRAG 347

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKN------TEDGFLIA 621
                  +  P   K       ++K         +GF++A
Sbjct: 348 RKGKAFTIATPYDDKYLAAIEHLVKQPIPRGSLPEGFVLA 387


>gi|228991413|ref|ZP_04151368.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442]
 gi|228768343|gb|EEM16951.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442]
          Length = 433

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 135/363 (37%), Gaps = 26/363 (7%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  ++           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 26  TPIQEKAIPVVMAGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 79

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    I+K       I V  I G    A + + L     G  HI++ T     D 
Sbjct: 80  RELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRKL----KGNTHIVVATPGRLLDH 135

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++   ++L  V         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 136 LRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEET-PESKQTMLFSATMPKDIKKLA 194

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK--AYWICPQIEEKKESNFRSVVERF 507
           ++      +  +      ++ + + +       K+     +  + +      F     R 
Sbjct: 195 KRYMKEPEMIQIQSAEVTVNNIKQGIIETTDRTKQDALRHVMDRDQPFLAVIFCRTKRRA 254

Query: 508 NSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           + L++       +   +HG +S   +E VM SF++   + LIAT V   G+DV   + + 
Sbjct: 255 SKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQYLIATDVAARGLDVEGVTHVF 314

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
             +      + +H++ GR GR       I    P            +     G  +  ++
Sbjct: 315 NYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAPKDEMYLKEIEKGI-----GATLQRQE 368

Query: 625 LKQ 627
           L+ 
Sbjct: 369 LEL 371


>gi|195565659|ref|XP_002106416.1| GD16140 [Drosophila simulans]
 gi|194203792|gb|EDX17368.1| GD16140 [Drosophila simulans]
          Length = 800

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 141/383 (36%), Gaps = 46/383 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L        ++ I Q   GSGKTL  ++     +          G  
Sbjct: 260 KPTAIQSQGWPIAL----SGRDLVGIAQ--TGSGKTLAYMLPAIVHIGNQPPIIRGEGPI 313

Query: 324 AVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           A+++AP   LAQQ    ++ Y      +I    I G   +  + + L+R       +II 
Sbjct: 314 ALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDR----GVEVIIA 369

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPI 431
           T     D ++           L+L   D     G   Q R  + Q      V++ +AT  
Sbjct: 370 TPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSATWP 429

Query: 432 PRTLVLTSLGDIDISKI----TEKPAGRKP-----IKTVIIPINRIDEVIERLKVVLSEG 482
                L      D  +I        A         I T I    R+  ++  +  + + G
Sbjct: 430 KEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEISPIKNSG 489

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                I   +E       +  VE    +      +   IHG  +  +++SV+  F+NG  
Sbjct: 490 SNGNKIIVFVET------KIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKS 543

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +LIAT V   G+DV D   +I  +  +     +H++ GR GR +++ +    + P  +K
Sbjct: 544 NILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRI-GRTGRCQQLGTAYTFFTPDNAK 602

Query: 603 NSYTRLSVLKNTEDGFLIAEEDL 625
            +   +SVL+        A  DL
Sbjct: 603 QARELISVLEEAGQTPSQALLDL 625


>gi|31792446|ref|NP_854939.1| cold-shock DEAD-box protein A [Mycobacterium bovis AF2122/97]
 gi|121637182|ref|YP_977405.1| putative cold-shock dead-box protein a homolog deaD [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|215430135|ref|ZP_03428054.1| hypothetical protein MtubE_05528 [Mycobacterium tuberculosis
           EAS054]
 gi|224989657|ref|YP_002644344.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|260186187|ref|ZP_05763661.1| hypothetical protein MtubCP_09173 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289446844|ref|ZP_06436588.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289753325|ref|ZP_06512703.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis EAS054]
 gi|31618035|emb|CAD94146.1| PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent
           RNA helicase deaD homolog) [Mycobacterium bovis
           AF2122/97]
 gi|121492829|emb|CAL71300.1| Probable cold-shock dead-box protein a homolog deaD [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|224772770|dbj|BAH25576.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|289419802|gb|EFD17003.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289693912|gb|EFD61341.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis EAS054]
          Length = 563

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/359 (21%), Positives = 131/359 (36%), Gaps = 37/359 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SPT  Q + I  ++           +     G+GKT    I M + ++      QA+++ 
Sbjct: 35  SPTAIQAATIPALMAG------SDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLV 88

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y    +Q+ V  I G    A +   L R     A +++GT     
Sbjct: 89  PTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR----GAQVVVGTPGRVI 144

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTL 435
           D ++   L        +L   DE    G    +   L++      V L +AT  P  R L
Sbjct: 145 DHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKL 204

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D        K A  + I    I + R  + +   +V+  E  +A  +  +    
Sbjct: 205 SAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDAL--TRVLEVEPFEAMIVFVRT--- 259

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E           S A I G +    +E  + + ++G   +L+AT V   G+
Sbjct: 260 -----KQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGL 314

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           DV   S ++  +  H   + +H++ GR GR     + ++   P             + T
Sbjct: 315 DVERISHVLNYDIPHDTESYVHRI-GRTGRAGRSGAALIFVSPRELHLLKAIEKATRQT 372


>gi|307636940|gb|ADN79390.1| cold-shock DEAD-box protein A [Helicobacter pylori 908]
          Length = 491

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---K 496
                I ++ +K     PIK  I P N  +  I +   V+++ ++A  I   ++ +   K
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINKHERAEAIMRLLDTQAPEK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ S + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|16125088|ref|NP_419652.1| DEAD-box ATP dependent DNA helicase [Caulobacter crescentus CB15]
 gi|221233815|ref|YP_002516251.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
 gi|13422088|gb|AAK22820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
           crescentus CB15]
 gi|220962987|gb|ACL94343.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
          Length = 476

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 123/361 (34%), Gaps = 27/361 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  AI  +LQ          +     G+GKT    + +   +          G +
Sbjct: 24  EPTPIQAQAIPVVLQGKD------LLGIAQTGTGKTAAFALPILQRLAEDRKPAPRRGCR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++++P   LA Q  E  K Y  +  + V  I G +    + KAL     G   +++ T 
Sbjct: 78  CLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMKALA----GGIDVLVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +     I+   +        Q L L        +     T   + L  ++    
Sbjct: 134 GRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKI-AAQLTKNRQNLFFSATMPS 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE------KKE 497
           +I K+  +     P++  + P     E I++  + +   +K   +     +         
Sbjct: 193 EIGKLAGELLN-NPVQVSVAPQATTVERIDQRVLFIEAQRKRPLLAELFADTSFSRTIVF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   +R            A IHG  +   +E  + +FK G  + L+AT +   GIDV
Sbjct: 252 TRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRALVATDIAARGIDV 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            D S +I     +   A +H++ GR  R  +    I                  + T   
Sbjct: 312 NDVSHVINYELPNVPEAYVHRI-GRTARKGKDGIAISFCADDERNLLKDIQKATRQTIPS 370

Query: 618 F 618
           F
Sbjct: 371 F 371


>gi|311279320|ref|YP_003941551.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308748515|gb|ADO48267.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 457

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/462 (18%), Positives = 175/462 (37%), Gaps = 66/462 (14%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + + T  Q + +  IL     +       Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYQTMTPVQAATLPAILAGKDVR------AQAKTGSGKTAAFGLGLLQHIDASQFI 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    ++K  +    I V  + G +P + +R +L        HII+
Sbjct: 72  TQSLVLCPTRELADQVASALRKLARFMPNIKVLTLCGGLPFSVQRDSLTHA----PHIIV 127

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            T     D ++           L+L   D     G    L           ++  A    
Sbjct: 128 ATPGRLLDHLKKETVSLDALQTLVLDEADRMLDMGFADAL---------DEVIAWAPEKR 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++    +I+ I+ +   R P+   I  ++ +   +E+    +S   K   +   +
Sbjct: 179 QTLLFSATWPAEIAAISRR-IQRDPLTIEIDTVDELP-AVEQRFYEVSRSGKIGLLQTLL 236

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            + +        N +   +           S+  +HG M   D++  +  F NG+ ++L+
Sbjct: 237 SQHQPASCVVFCNTKKDCQAVCDALSDSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLV 296

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+    ++I           +H++ GR  R  E    I L  P  ++ +  
Sbjct: 297 ATDVAARGLDIKALEMVINYELSWDPEVHVHRI-GRTARAGERGLAISLCAPEEAQRANA 355

Query: 607 RLSVLKNTEDGFLI-----------AEEDL--------KQRKEGEILG--IKQSGMPKFL 645
              +L    D   +           A   L        K R  G+ILG    + G+    
Sbjct: 356 LEEMLNVKLDWQPLPNGVRIAPLEAAMATLCIDGGKKAKMR-PGDILGALTGELGLDGAD 414

Query: 646 IAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           I + ++H   + + + +  A+H   Q      ++G+++++ L
Sbjct: 415 IGKIDIHPIHAYVAVRQSVARHAWKQL-QQGKIKGKTVKVRL 455


>gi|283457475|ref|YP_003362053.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133468|dbj|BAI64233.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 732

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 83/417 (19%), Positives = 152/417 (36%), Gaps = 47/417 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA------- 317
           L  + +  P+  QE  I  +L+          +     G+GKT    +   +        
Sbjct: 76  LEEVGYEKPSPIQEQTIPLLLEGHDV------VGLAQTGTGKTAAFALPALSRMAELADI 129

Query: 318 --VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHG 374
             V    Q +++AP   LA Q  E    Y  + +   V  I G  P   +   L R    
Sbjct: 130 NGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRR---- 185

Query: 375 QAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVL 424
            A +++GT     D ++   L        +L   DE  R G  + ++   + T     V 
Sbjct: 186 GAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSKQVA 245

Query: 425 LMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT     R +    L D    ++  K      I    + +    ++    +V+  E 
Sbjct: 246 LFSATMPNSIRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVMHSHKLDAMTRVLEVEN 305

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                +  + +++ E       E  + L     ++ AI +G +    +E  +D+ ++G  
Sbjct: 306 YDGIIVFVRTKKETE-------EVADKLKARGFAAAAI-NGDIPQQLRERTVDALRDGRI 357

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+DV   S+++  +  H   + +H++ GR GR     + IL   P    
Sbjct: 358 DILVATDVAARGLDVERISLVVNYDIPHDTESYVHRI-GRTGRAGREGAAILFVTPREKY 416

Query: 603 NSYTRLSVLKNTED--GFLIAE---EDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
                    +   +      AE   E  KQR   +I    +S    F     E +++
Sbjct: 417 MLRQIEKATRQKVEPMHMPTAEAVNETRKQRFAQQITETIESEDLSFFRQIIEDYEN 473


>gi|253771018|gb|ACT35657.1| vasa-like protein [Haliotis asinina]
          Length = 763

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 133/366 (36%), Gaps = 38/366 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAG--------- 321
            PT  Q+ +I  I            +     GSGKT   L+      V+ G         
Sbjct: 329 KPTPVQKYSIPIIAAGRD------LMACAQTGSGKTAAFLLPTLTCMVKEGLTTSQFSEV 382

Query: 322 --GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              QA+I+AP   L  Q +   +K+++ T++   ++ G     H+ + +ER     AH++
Sbjct: 383 QEPQAIIVAPTRELVVQIHSDARKFSRGTEVRPVVVYGGTSVGHQLREVER----GAHVV 438

Query: 380 IGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           +GT     D I+  K+ L  V     DE  R                  L M      +T
Sbjct: 439 VGTPGRLLDFIEKGKIGLGKVKFLILDEADRMLDMGFEPCI--RKLVEQLGMPPKTQRQT 496

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    +I K+           T +  +   +  +E+    +   +K   +C  + E
Sbjct: 497 LMFSATFPTEIQKLAADFLNDYLFLT-VGRVGGANTDVEQNFFEVDRLQKREKLCSILTE 555

Query: 495 KKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   S           IHG     ++E  +  FK GT  +LIAT
Sbjct: 556 SGSDKTLVFVEQKRNADFLASYLSQSGFPTTSIHGDRLQREREEALRDFKRGTAPILIAT 615

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPLSKNSYTR 607
           +V   G+D+ +   ++  +        +H++ GR GR   +      Y H   S    + 
Sbjct: 616 SVAARGLDIPEVKHVVNYDLPSSIDEYVHRI-GRTGRCGNLGKATSFYSHDSDSALVKSL 674

Query: 608 LSVLKN 613
           + +L  
Sbjct: 675 VRILTE 680


>gi|192359134|ref|YP_001980830.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
 gi|190685299|gb|ACE82977.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
          Length = 469

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/461 (18%), Positives = 174/461 (37%), Gaps = 63/461 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ ++  T  Q  ++  +L           I Q   GSGKT    I +   ++     
Sbjct: 30  LASLEYTSMTPIQAESLPWVLAGRD------LIAQAKTGSGKTAAFGIGLLEKLQVDSFA 83

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  + T  I +  + G +    +  +LER     AHI++
Sbjct: 84  VQALVLCPTRELADQVAKELRRLARFTHNIKILTLCGGVAIGPQLGSLER----GAHIVV 139

Query: 381 GTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++          +L+L   D     G    +         + ++ +A    
Sbjct: 140 GTPGRIVDHLRKGSLHLDRLQQLVLDEADRMLDMGFADDI---------NTVIASANSER 190

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++    +I +++ +   R P++  +  ++   ++ +    +     +   +   +
Sbjct: 191 QTLLFSATYPANIQQMSARY-QRDPVRVTVESLHTSQQIRQHFYELAEGDSRTSAVINLL 249

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              +        N ++  E      +    +   +HG M   +++ V+  F N +C +LI
Sbjct: 250 AHFQPASTLIFCNTKAECEELADGLQAKKVAALALHGDMEQKERDRVLVRFANKSCAVLI 309

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   GID+ D   +I           +H++ GR GR       + L  P        
Sbjct: 310 ATDVAARGIDIKDLDAVINYELARDSEVHVHRI-GRTGRAGAEGLALSLVAPREIVRVNR 368

Query: 607 RLSVLKN-----------TEDGFLIAEEDLKQ-------RKEGEILG--IKQSGMPKFLI 646
               L+            T          L          + G+I+G   K +G+P   I
Sbjct: 369 LEDYLRQTISLEAVPDSDTNSLPQPVMATLNIDGGKKDKLRPGDIIGALTKDAGLPFEKI 428

Query: 647 AQPELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            + ++ D  + + + R  A+  L Q  +   ++G+  R  L
Sbjct: 429 GKIDIFDFAAYVAVDRSIARAALRQLQE-GKLKGRKFRARL 468


>gi|194763631|ref|XP_001963936.1| GF20995 [Drosophila ananassae]
 gi|190618861|gb|EDV34385.1| GF20995 [Drosophila ananassae]
          Length = 996

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 159/454 (35%), Gaps = 47/454 (10%)

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINV 257
           +     + F  I +P      E       R     +    +   +    F++       +
Sbjct: 201 NLEPFNKDFYNI-HPNTLAKTEQQVADMRRELEITVSGNDLPHPVA--NFEECSLPAHVI 257

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +    Q   +     PT  Q       L        ++ I Q   GSGKTL  ++     
Sbjct: 258 DEMKRQGFTK-----PTAIQSQGWPIAL----SGRDLVGIAQ--TGSGKTLAYMLPAIVH 306

Query: 318 VEA--------GGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKA 367
           +          G  A+++AP   LAQQ    ++ Y      +I    I G   +  + + 
Sbjct: 307 IGNQPPILRGEGPVALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARD 366

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQK 417
           LER       +II T     D ++           L+L   D     G   Q R  + Q 
Sbjct: 367 LER----GVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 422

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKIT------EKPAGRKPIKTVIIPINRIDEV 471
                V++ +AT       L      D  +I             + I  +   + +   +
Sbjct: 423 RPDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMSLSANHNIRQIVEICTEMEKPQRM 482

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
           +  LK +      A     +I    E+  +  VE    +      +   IHG  +  +++
Sbjct: 483 VRLLKEIAPTTNNAANNGNKIIIFVETKIK--VEDILQIIRTEGYTATSIHGDKTQNERD 540

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           SV+  F+NG   +LIAT V   G+DV D   +I  +  +     +H++ GR GR +++ +
Sbjct: 541 SVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRI-GRTGRCQQLGT 599

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
               + P  +K +   +SVL+        A  DL
Sbjct: 600 AYTFFTPDNAKQARELISVLEEAGQTPSQALLDL 633


>gi|255555929|ref|XP_002519000.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223541987|gb|EEF43533.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 534

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 142/398 (35%), Gaps = 49/398 (12%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K+ K       +        +     F  P+  Q  A   +L           I     G
Sbjct: 108 KEAKYAALKSFSESNLPDNVLKCCQSFKNPSPIQAHAWPFLLDGRD------FIGIAKTG 161

Query: 304 SGKTLVALIAMAAAVEAGGQ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           SGKTL   I     V +  +           +++AP   LA Q    ++   +   +   
Sbjct: 162 SGKTLAYGIPAVMHVLSKRKGASANSVNPLCLVLAPTRELADQISVVLRDAGEPCGVRSV 221

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHR 405
            + G   +  +  +L+        I+I T    +D I+           L+L   D    
Sbjct: 222 CLYGGTSKGPQISSLKS----GVDIVIATPGRLKDLIEMNICHLMEVSFLVLDEADRMLD 277

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            G +Q ++     T             + ++ ++   +D+  + E+   R PIK V+   
Sbjct: 278 MGFRQEVRSILSKTCS---------ARQMIMFSATWPLDVHNLAEEYMDRNPIKVVVGSE 328

Query: 466 NRI-DEVIERLKVVLSEGKKAYWICPQIEEKKESN---------FRSVVERFNSLHEHFT 515
           +   +  + ++  VL +  +   +   +E+  ++          ++   ER + +     
Sbjct: 329 DTAANHDVMQIVEVLDDHLRDKRLLALLEKYHKTQRNRVLVFALYQKEAERLDGMLHRSG 388

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            ++  IHG  +   +   +  FK G+C L++AT V   G+DV D  ++I  +        
Sbjct: 389 WNVVSIHGNKAQEQRTKALSLFKKGSCPLMVATDVAARGLDVPDVEVVINYSFPLTTEDY 448

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           +H++ GR GR  +       +       +   ++VL+ 
Sbjct: 449 VHRI-GRTGRAGKKGVAHTFFTHHNKGLAGELVNVLRE 485


>gi|325265712|ref|ZP_08132401.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
 gi|324982843|gb|EGC18466.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
          Length = 449

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 126/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------EAGGQA 324
           SPT  Q  +I   L D         +     GSGKT   L+     +         G + 
Sbjct: 25  SPTPIQAQSIPAALADKD------IMASAQTGSGKTAAFLLPSLQKIVKRSEKPGKGPRV 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +  + Y +N   +    + G      + KA+ +       II+ T 
Sbjct: 79  LVLTPTRELAAQVEKNAQIYAKNMKWVRSVTLVGGSSFGQQIKAMSKP----IDIIVATP 134

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDHMRSGRVDFDRLEVLILDEADRMLDMGFIDDIET-------IVAATPEDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    I   ++  ++ E+L     +  K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKNPEVIEIEREDKQGKIDEQLLYCDDKNHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRSGLAISF 349


>gi|229133365|ref|ZP_04262193.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196]
 gi|228650038|gb|EEL06045.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196]
          Length = 450

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVIMSGKDV------IGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PDSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYME-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 VSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|90961336|ref|YP_535252.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
 gi|90820530|gb|ABD99169.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
          Length = 492

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 132/371 (35%), Gaps = 34/371 (9%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAV 325
            F   T  Q   I  +L           I Q   G+GKT    + +   ++      QAV
Sbjct: 20  GFEEATPIQAETIPLVLAG------NDVIGQAQTGTGKTAAFGLPVLQQLDLDLRQIQAV 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I++P   LA Q  E +    +  +  V+++ G      + K LE+      HI++GT   
Sbjct: 74  IISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLEQ---HTPHILVGTPGR 130

Query: 386 FQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTL 435
             D IQ           LIL   DE    G    +   +         LL +AT     L
Sbjct: 131 LLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQTLLFSATMPKEIL 190

Query: 436 VL--TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            +    + +  I KI  K      +    +     ++     +++  +  +   +  +  
Sbjct: 191 KIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLIDVQAPELTIVFGRT- 249

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+  +   E    + A IHG ++   + +V+  FKNG   +L+AT V   
Sbjct: 250 -------KRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAAR 302

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   + +   +      + +H++ GR GR     + +    P           + K 
Sbjct: 303 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKK 361

Query: 614 TEDGFLIAEED 624
             D      +D
Sbjct: 362 RMDPLKPPTQD 372


>gi|170039965|ref|XP_001847786.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167863566|gb|EDS26949.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 942

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 142/372 (38%), Gaps = 42/372 (11%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           +LR + F  PT  Q  AI  ++           I     GSGKTL  ++ M   V     
Sbjct: 295 VLRKLGFEKPTPIQCQAIPAVMSGRD------LIGIAKTGSGKTLAFILPMFRHVLDQPP 348

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  A+IM+P   L  Q  + IKK+ ++  +    + G    + +   L+R     
Sbjct: 349 LEEAEGPIAIIMSPTRELCMQIGKDIKKFAKSLNLRAVCVYGGTGISEQIAELKR----G 404

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           +          
Sbjct: 405 AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNIR---- 460

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++     +  +  +   +KP++  +   + + + +E+  VVL E  K + 
Sbjct: 461 --PDRQTVMFSATFPRQMEALARR-ILKKPVEIQVGGRSVVCKEVEQHVVVLEEDAKFFK 517

Query: 488 ICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           +   +   +E      F    E  + L +    +      +HG +   D++S +  FK G
Sbjct: 518 LLELLGLYQELGSIIVFVDKQENADILLKDLMKASYPCMSLHGGIDQFDRDSTIIDFKQG 577

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             KLLIAT+V   G+DV    +++  +  +     +H+  GR GR               
Sbjct: 578 RVKLLIATSVAARGLDVKQLILVVNYDCPNHYEDYVHR-CGRTGRAGNKGFAWTFLTHEQ 636

Query: 601 SKNSYTRLSVLK 612
            + S   +  L+
Sbjct: 637 GRYSGDIIRALE 648


>gi|103486540|ref|YP_616101.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
 gi|98976617|gb|ABF52768.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
          Length = 458

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 135/347 (38%), Gaps = 35/347 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  +L        M+ I Q   G+GKT   ++ M   +  G       +++
Sbjct: 23  EPTAIQAGAIPSVL----MMRDMIGIAQ--TGTGKTASFVLPMIDILAHGRARALMPRSL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  +KY +  ++ + ++ G +    + KALE+       ++I T   
Sbjct: 77  ILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQIKALEK----GVDVLIATPGR 132

Query: 386 FQDSIQYYKL-----ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D  +  K+      L+++DE  R      +   +       +        +TL+ ++ 
Sbjct: 133 LMDLFERGKILLTGCNLLVIDEADRMLDMGFIPDIEN------ICTKLPANRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
               I K+ +K         V  P +R +E IE+  V  SE  K   +   IE +     
Sbjct: 187 MPPPIKKLADKFLSNPKTIEVARPASR-NENIEQFVVKTSERGKRDTLRGLIEAEDLSTA 245

Query: 497 --ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N ++ V       +        IHG M    + + +D FK GT  +L+A+ V   G
Sbjct: 246 IVFCNRKTTVRELAKSLQRSGYRAGEIHGDMDQSSRIAELDRFKAGTINILVASDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           +DV   S +   +A       +H++ GR GR         L  P   
Sbjct: 306 LDVKGVSHVFNFDAPWHPDDYVHRI-GRTGRAGAQGRAFTLVTPSDD 351


>gi|321313476|ref|YP_004205763.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|320019750|gb|ADV94736.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
          Length = 479

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 143/371 (38%), Gaps = 40/371 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           L  + +  PTK Q+S I   L+      R   +++   GSGKT    I +       E  
Sbjct: 17  LEGLGYTEPTKVQQSVIPAALE------RKDLVVKSQTGSGKTASFGIPLCELANWDENK 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E I    +  +I    + G      ++  L++    ++HI++G
Sbjct: 71  PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQ----KSHIVVG 126

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L        ++   DE    G  +Q   + +        ++ +  +P
Sbjct: 127 TPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTMLFSATLP 186

Query: 433 RT---LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           +    L    +   +  +I       + I+  +I +   ++      V+++E   +  I 
Sbjct: 187 QDIEKLSRQYMQKPEHIEIKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIF 246

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E         V +     +        IHG M   D+  VM+ FK G  + L+AT 
Sbjct: 247 CRTKE--------HVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD 298

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + S++I  +      + +H+  GR GR       I       +      L+
Sbjct: 299 VAARGIDIENISLVINYDLPVEKESYVHR-TGRTGRAGNKGKAISFV----TAFEKRFLA 353

Query: 610 VLKNTEDGFLI 620
            ++    GF I
Sbjct: 354 DIEEYI-GFEI 363


>gi|229017793|ref|ZP_04174677.1| ATP-dependent RNA helicase [Bacillus cereus AH1273]
 gi|229024016|ref|ZP_04180493.1| ATP-dependent RNA helicase [Bacillus cereus AH1272]
 gi|228737285|gb|EEL87803.1| ATP-dependent RNA helicase [Bacillus cereus AH1272]
 gi|228743484|gb|EEL93600.1| ATP-dependent RNA helicase [Bacillus cereus AH1273]
          Length = 450

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPA-SKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|225555683|gb|EEH03974.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus G186AR]
          Length = 544

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/367 (19%), Positives = 137/367 (37%), Gaps = 42/367 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q       L           +   + GSGKTL   +     + A        G   
Sbjct: 149 PTAIQAQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIV 202

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T  
Sbjct: 203 LVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDLTR----GVEVCIATPG 258

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP-- 432
              D ++  K        L+L   D     G + +++    Q        + +AT     
Sbjct: 259 RLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMWSATWPKDV 318

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIP----INRIDEVIERLKVVLSEGKKAYWI 488
           R L    L D     I           T I+       + D + + L  ++ + K +  +
Sbjct: 319 RQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHLDRIMEDNKHSKVL 378

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       R   +    L +    +++I HG     +++ V++ FK G   +++AT
Sbjct: 379 IFT------GTKRVADDITRFLRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVAT 431

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV D + ++  +  +     +H++ GR GR     + I L+    +K +   +
Sbjct: 432 DVASRGIDVRDITHVLNYDYPNNSEDYVHRI-GRTGRAGAKGTAITLFTTDNAKQARDLV 490

Query: 609 SVLKNTE 615
           ++L  ++
Sbjct: 491 AILSESK 497


>gi|167614869|ref|ZP_02383504.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis Bt4]
          Length = 465

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 82/460 (17%), Positives = 169/460 (36%), Gaps = 60/460 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 23  LAQLGYTVMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARRFD 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    + V  + G  P   + ++LE      AHII+
Sbjct: 77  VQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIIV 132

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 133 GTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVAR------LCPPTRQTL 186

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   ++  
Sbjct: 187 LFSATYPDGIAKLSQQFLRNP--KEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLKHY 244

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 245 RPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 305 VAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQEGWALSLASMDEMGRVGAIEQ 363

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILG--IKQSGMPKFLIA 647
            L    +   +A              E L+           G++LG     +G     I 
Sbjct: 364 ALGRDVEWHPLAELKADGNEPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGSQIG 423

Query: 648 QP--ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +       + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 424 KINVTEFSTYVALERGIARDALRKL-NAGKIKGKRVKVRL 462


>gi|160888927|ref|ZP_02069930.1| hypothetical protein BACUNI_01347 [Bacteroides uniformis ATCC 8492]
 gi|270293944|ref|ZP_06200146.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D20]
 gi|156861394|gb|EDO54825.1| hypothetical protein BACUNI_01347 [Bacteroides uniformis ATCC 8492]
 gi|270275411|gb|EFA21271.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D20]
          Length = 425

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 119/344 (34%), Gaps = 34/344 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQAVI 326
           +PT  QE +I  +LQ          +     G+GKT    I +   +         +A+I
Sbjct: 23  TPTPIQEKSIPILLQGKD------LLGCAQTGTGKTAAFSIPILQKLYKTDNRKSIKALI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E    Y + T +   +I G + Q  +   L+R       I++ T    
Sbjct: 77  LTPTRELAIQIGESFSAYGKYTGLRHAVIFGGVGQKPQTDELKR----GVQILVATPGRL 132

Query: 387 QDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           QD +         L   ++DE  R      +           +L       +TL  ++  
Sbjct: 133 QDLVNQGFINLKALEFFVLDEADRMLDMGFIHDI------RRILKLLPAKRQTLFFSATM 186

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
             +I  +        P K  + P +   + I +    + + +K   +   ++        
Sbjct: 187 PPEIETLANS-MLTHPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIHLLKNPAIKSVL 245

Query: 497 -ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  +   ++              IHG  S   ++  +  FKN   ++LIAT +   GI
Sbjct: 246 IFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRALTGFKNHELRVLIATDIAARGI 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV   S +I     +     +H++ GR GR       +      
Sbjct: 306 DVDQLSHVINYELPNIPETYVHRI-GRTGRAGHDGIALSFCESE 348


>gi|160880140|ref|YP_001559108.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160428806|gb|ABX42369.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 514

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 129/336 (38%), Gaps = 23/336 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----AGGQAVIM 327
            P+  Q+  I  +L+          +     G+GKT    + +  ++     +G +A+I+
Sbjct: 23  EPSPIQKKTIPLVLEGRD------ILGCAQTGTGKTAAFALPILQSLSKGEGSGVRALII 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LA Q YE  + + + T +   +I G + Q+ +  +L+        I+I T     
Sbjct: 77  TPTRELAIQIYESFECFGKYTSLKQSVIYGGVGQSLQVNSLKA----GIDILIATPGRLN 132

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D I    + L  ++        Q L +        V+ +      +TL+ ++    +I  
Sbjct: 133 DLIGQGYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLL-PKTRQTLLFSATMPKEIES 191

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFR 501
           +        P    I P+    + IE+    +    K   +   I+E K       +  +
Sbjct: 192 LATNLLN-NPEIIKISPVTSTVDSIEQSVYFVDRLNKISLLTSLIKEHKMSRVLVFTKTK 250

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              +R              IHG      +++ +  FK G  K+L+AT +   GID+ + S
Sbjct: 251 HGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLVATDIAARGIDISELS 310

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            ++  +  +     +H++ GR GR     + I L +
Sbjct: 311 YVVNYDIPNQAEIYIHRI-GRTGRAGLGGNAINLCN 345


>gi|260204506|ref|ZP_05771997.1| hypothetical protein MtubK8_09388 [Mycobacterium tuberculosis K85]
 gi|289573913|ref|ZP_06454140.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85]
 gi|289538344|gb|EFD42922.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85]
          Length = 563

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/359 (21%), Positives = 131/359 (36%), Gaps = 37/359 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SPT  Q + I  ++           +     G+GKT    I M + ++      QA+++ 
Sbjct: 35  SPTAIQAATIPALMAG------SDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLV 88

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y    +Q+ V  I G    A +   L R     A +++GT     
Sbjct: 89  PTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR----GAQVVVGTPGRVI 144

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTL 435
           D ++   L        +L   DE    G    +   L++      V L +AT  P  R L
Sbjct: 145 DHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPKYKQVALFSATMPPAIRKL 204

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D        K A  + I    I + R  + +   +V+  E  +A  +  +    
Sbjct: 205 SAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDAL--TRVLEVEPFEAMIVFVRT--- 259

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E           S A I G +    +E  + + ++G   +L+AT V   G+
Sbjct: 260 -----KQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGL 314

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           DV   S ++  +  H   + +H++ GR GR     + ++   P             + T
Sbjct: 315 DVERISHVLNYDIPHDTESYVHRI-GRTGRAGRSGAALIFVSPRELHLLKAIEKATRQT 372


>gi|167896715|ref|ZP_02484117.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 7894]
          Length = 435

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 166/452 (36%), Gaps = 61/452 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  Q +++   L           I Q   GSGKT    +A+ A ++A     QA+++ P 
Sbjct: 2   TPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPT 55

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + I++  +    + V  + G  P   + ++LE      AHII+GT     D 
Sbjct: 56  RELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIIVGTPGRIMDH 111

Query: 390 IQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +    L L      ++DE  R           K            P  +TL+ ++     
Sbjct: 112 LDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQ------CPPTRQTLLFSATYPDG 165

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------S 498
           I+K++++       K V +     D  I +    ++E ++ + +   +   +        
Sbjct: 166 IAKLSQQFLRHP--KRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFC 223

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           N +        +       +  +HG +   +++ V+  F N +C +L+AT V   G+D+ 
Sbjct: 224 NTKQQCRDLLDVLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIA 283

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
               +I  +        +H++ GR GR ++    + L               L    +  
Sbjct: 284 QLEAVINVDVTPDPEVYVHRI-GRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWH 342

Query: 619 LIA-------------EEDLKQRK-------EGEILGIKQSGMPKFLIAQP-----ELHD 653
            +A              E L+           G++LG   +G   F  AQ          
Sbjct: 343 PLAELKAGGDAPLLPPMETLQILGGRKDKIRPGDVLGAL-TGDAGFSGAQIGKINVTEFS 401

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 402 TYVAVERGIARDALRKL-NAGKIKGKRVKVRL 432


>gi|291486518|dbj|BAI87593.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. natto BEST195]
          Length = 479

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 144/371 (38%), Gaps = 40/371 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           L  + +  PTK Q+S I   L+      R   +++   GSGKT    I +       E  
Sbjct: 17  LEGLGYTEPTKVQQSVIPAALE------RKDLVVKSQTGSGKTASFGIPLCELADWDENK 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E I    +  +I    + G      ++  L++    ++HI++G
Sbjct: 71  PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQ----KSHIVVG 126

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+   L        ++   DE    G  +++   +    T    +L +AT  
Sbjct: 127 TPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTMLFSATLP 186

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L    + + +  +I       + I+  +I +   ++      V+++E   +  I 
Sbjct: 187 EDIEKLSRQYMQNPEHIEIKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIF 246

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E         V +     +        IHG M   D+  VM+ FK G  + L+AT 
Sbjct: 247 CRTKE--------HVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD 298

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + S++I  +      + +H+  GR GR       I       +      L+
Sbjct: 299 VAARGIDIENISLVINYDLPVEKESYVHR-TGRTGRAGNKGKAISFV----TAFEKRFLA 353

Query: 610 VLKNTEDGFLI 620
            ++    GF I
Sbjct: 354 DIEEYI-GFEI 363


>gi|240280856|gb|EER44360.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Ajellomyces
           capsulatus H143]
          Length = 1200

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 96/521 (18%), Positives = 180/521 (34%), Gaps = 76/521 (14%)

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           G+ K   ++  +  P  IF +  D++   I+                   EA   L    
Sbjct: 461 GRNKTNFSKSKLSKPEAIFGDEDDIDMKAIDP------------------EADDFLA--- 499

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL--AGQIALLLMR 244
             I     +KK  P +      ++     K+F         L  +E+     ++  + +R
Sbjct: 500 --ITSKGRKKKDLPPVNH--EKMNYEPFRKNFYTEPVDLAELTEEEVAALRLELDGIKVR 555

Query: 245 KQFKKEIGIPINVEGKIAQKI--LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGD 301
                +     +  G   Q +  +R + +  PT  Q  AI  I+           I    
Sbjct: 556 GVDVPKPVQKWSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDV------IGVAK 609

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+  L+ M   +          G   +IM P   LA Q ++  K + +   +   
Sbjct: 610 TGSGKTIAFLLPMFRHIMDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALNLRAV 669

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
              G  P   +   L+R     A II+ T     D +           ++  V++DE  R
Sbjct: 670 CAYGGAPIKDQIAELKR----GAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADR 725

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                             +L    P  +T++ ++    ++  +  K    KP++ ++   
Sbjct: 726 MFDMGFEPQVM------RILGNVRPQRQTVLFSATFPRNMEALARKTLA-KPVEIIVGGK 778

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---------FRSVVERFNSLHEHFTS 516
           + +   I ++  V ++  K   +   + E    +         F    E  + L      
Sbjct: 779 SVVAPEITQIVEVRNQDTKFVRLLALLGELYADDKNEDARALIFVDRQEAADGLLRDLMH 838

Query: 517 S---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  IHG    +D++S +D FK G   +LIAT+V   G+DV    +++  +A +   
Sbjct: 839 KGYPCMSIHGGKDQVDRDSTIDDFKAGVFPILIATSVAARGLDVKQLKLVVNYDAPNHLE 898

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
             +H+  GR GR     + +        + S      LK +
Sbjct: 899 DYVHR-AGRTGRAGNTGTAVTFLTEDQERYSVDISKALKQS 938


>gi|299470793|emb|CBN79839.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 572

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 130/372 (34%), Gaps = 43/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------G 321
           +PT +Q  +    L           I     GSGKTL  L+    A+            G
Sbjct: 168 APTPTQAQSWPIALSGRD------IISVARTGSGKTLGFLLPAFHALLNRPGGCKPRMGG 221

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              V++AP   LA Q  E   K+ +   I    + G  P+  + KA++        ++I 
Sbjct: 222 PYIVVLAPTRELACQINEEATKFGKAAGIRSTTVYGGSPKYPQIKAIQS----GVQVVIA 277

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPI 431
           T     D ++  K        L L   D     G   Q R  +         L  TAT  
Sbjct: 278 TPGRLNDIMEMGKINMTNVMTLALDEADRMLDMGFEPQIRTIIDAMPAKRQTLFFTATWP 337

Query: 432 PRTLVLTSLGDIDISKITEKPAG-------RKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                L      +   IT   AG             ++   ++ D++ E L  +     K
Sbjct: 338 KEVQRLARDFVTNPVHITVGDAGKLNANKSITQHIHIVDERDKGDKLWELLTKLHENPPK 397

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A      I   K    +   ++          ++  +HG     ++  VMD +++G  ++
Sbjct: 398 ADHGKTIIFSSK----KRNCDKLAQAAWDRGFAVDSLHGDREQWERTKVMDQYRSGEVRM 453

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFG-LAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           L+AT V   G+DV D S +I  +    G    +H++ GR  RG         +    +K 
Sbjct: 454 LVATDVAARGLDVKDISYVINYDFPVDGVENYIHRI-GRTARGNASGDAFTFFTSSDAKF 512

Query: 604 SYTRLSVLKNTE 615
           +   + VL+   
Sbjct: 513 ANKLVGVLRGAN 524


>gi|195338535|ref|XP_002035880.1| GM15916 [Drosophila sechellia]
 gi|194129760|gb|EDW51803.1| GM15916 [Drosophila sechellia]
          Length = 681

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 123/349 (35%), Gaps = 42/349 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------A 324
           PT  Q+ AI  I            +     GSGKT   L+ + + +    Q        A
Sbjct: 288 PTPIQKRAIPVITAGRD------LMACAQTGSGKTASFLLPIISKLLDDPQDLEFGRPQA 341

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI++P   LA Q ++  +K+   T + + I+ G     H+   + +     +H++I T  
Sbjct: 342 VIVSPTRELAIQIFDEARKFAYETYLKIGIVYGGTSFRHQNDCITK----GSHVLIATLG 397

Query: 385 LFQDSIQY--------YKLILVIVDEQHRFGV----QQRLKLTQKATAPHVLLMTATPIP 432
              D +            ++L   D     G     ++ +           L+ +AT   
Sbjct: 398 RLLDFVDRAFVTFEDTRFVVLDEADRMLDMGFSEGMRKLMTHVTMRPQHQTLMFSATFPE 457

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + L    L +     I         +K  I  +++ ++  + ++++  E         
Sbjct: 458 DIQRLAGEFLNNYVFVAIGMVGGACSDVKQTIYEVSKFNKRAKLMEILREEADGTIVFV- 516

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +   +   S           IHG      +E  +  FKNG+ K+LIAT+V
Sbjct: 517 --------ETKRGADFLASYLSETEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV 568

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              G+D+ +   +I  +        +H++ GR GR          + P 
Sbjct: 569 ASRGLDIKNIKHVINYDMPKNIDDYVHRI-GRTGRVGNNGRATTFFDPD 616


>gi|89894700|ref|YP_518187.1| hypothetical protein DSY1954 [Desulfitobacterium hafniense Y51]
 gi|89334148|dbj|BAE83743.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 537

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/335 (19%), Positives = 125/335 (37%), Gaps = 21/335 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA---VIMA 328
            P+  Q++AI   +  +        I Q   G+GKT    I +   +    QA   +I+ 
Sbjct: 36  EPSPIQKAAIPVAMDGLD------LIGQAQTGTGKTAAFGIPICEKINPKFQAVQALILT 89

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I K  +   I    I G      + +AL       + +++GT     D
Sbjct: 90  PTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALRF----GSQVVVGTPGRILD 145

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +    L L  V         + L +        +L        + ++ ++    +I K+
Sbjct: 146 HLNRGTLKLQYVKMVVLDEADEMLDMGFVDDIETILKQVPKEERQVMLFSATMPPEIKKL 205

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---KESNFRSVVE 505
            +     +P    +        +IE++     +  K   +C  I+ +   +   F     
Sbjct: 206 AQNYMS-QPKSVAVSRDELTVPLIEQVFYETRDKIKVDALCRIIDMEDIGQAIIFCRTKR 264

Query: 506 RFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             + L     +       +HG +S   ++ VM  F++G  +LL+AT V   G+D+ + + 
Sbjct: 265 GVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLVATDVAARGLDIDNVTH 324

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +I  +      + +H++ GR GR       I L  
Sbjct: 325 VINFDIPQDPESYVHRI-GRTGRAGRKGQAITLVS 358


>gi|307183175|gb|EFN70084.1| Probable ATP-dependent RNA helicase DDX17 [Camponotus floridanus]
          Length = 705

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/365 (19%), Positives = 138/365 (37%), Gaps = 41/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L        ++ I Q   GSGKTL  ++     +          G  
Sbjct: 131 EPTAIQAQGWPIAL----SGRDLVGIAQ--TGSGKTLAYILPATVHINHQPRLNRGDGPI 184

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LAQQ     + +  ++ I    I G  P+  + + LER       I I T 
Sbjct: 185 VLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQARDLER----GVEICIATP 240

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       +   +++DE  R          +K      ++    P  + L+ +
Sbjct: 241 GRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRK------IIEQIRPDRQVLMWS 294

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK--- 495
           +    ++  + E          +       +  I ++  +  E +K Y +   + E    
Sbjct: 295 ATWPKEVQALAEDFLTDYIQINIGSLSLAANHNIRQIIEICQEHEKEYKLSQLLREIGTE 354

Query: 496 -------KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       + V +   ++     S+I+I HG  S  +++ V+  F+NG   +L+AT
Sbjct: 355 RGSKMIIFVETKKKVDDITKTIKRDGWSAISI-HGDKSQPERDYVLSEFRNGKTMILVAT 413

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV D   +I  +  +     +H++ GR GR +   +    + P  ++ +   +
Sbjct: 414 DVAARGLDVEDVKYVINFDYPNSSEDYIHRI-GRTGRCQSAGTAYAYFTPNNARQAKELI 472

Query: 609 SVLKN 613
           +VL+ 
Sbjct: 473 AVLEE 477


>gi|209880596|ref|XP_002141737.1| eukaryotic translation initiation factor 4A [Cryptosporidium muris
           RN66]
 gi|209557343|gb|EEA07388.1| eukaryotic translation initiation factor 4A, putative
           [Cryptosporidium muris RN66]
          Length = 404

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 133/359 (37%), Gaps = 33/359 (9%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            +N++G + + I       P+  Q+  +K IL           I Q   G+GKT   +IA
Sbjct: 35  ALNLDGNLLRGIFAYGFEKPSAIQQRGVKPILDGYDT------IGQAQSGTGKTATFVIA 88

Query: 314 MAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
               ++      Q +++AP   LAQQ  +          +      G          L  
Sbjct: 89  ALQKIDYSLNACQVLLLAPTRELAQQIQKVALALGDYCDLRCHACVGGTSVRDDMNKL-- 146

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATA 420
                 H+++GT     D +    L        IL   DE    G + ++     +    
Sbjct: 147 --KNGVHMVVGTPGRVFDMLDKGYLRVDHLKLFILDEADEMLSRGFKLQIHDIFKKLPQD 204

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             V L +AT     L LT+    D  +I   ++    + I+   + + + +  +  L  +
Sbjct: 205 VQVALFSATMPNEILHLTTQFMRDPKRILVKQEELTLEGIRQYYVAVEKDEWKLATLVDL 264

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
                  Y     ++     N R  V+R          + + +HG M   D+E +M  F+
Sbjct: 265 -------YETLTIVQAIIYCNTRIRVDRLTKQMTDRDFTCSCMHGDMDQKDREVIMRQFR 317

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +G+ ++LI T ++  GIDV   S++I  +        +H++ GR GR       +    
Sbjct: 318 SGSSRVLITTDLLARGIDVQQVSLVINYDLPVSAETYIHRI-GRSGRFGRKGVAVNFVT 375


>gi|115491279|ref|XP_001210267.1| hypothetical protein ATEG_00181 [Aspergillus terreus NIH2624]
 gi|121743211|sp|Q0D1K3|PRP5_ASPTN RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|114197127|gb|EAU38827.1| hypothetical protein ATEG_00181 [Aspergillus terreus NIH2624]
          Length = 1181

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/438 (19%), Positives = 156/438 (35%), Gaps = 67/438 (15%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ++  + +  PT  Q  AI  I+           I     GSGKT+  LI M   ++    
Sbjct: 563 VIDRLGYENPTSIQSQAIPAIMSGRDV------IGVAKTGSGKTVAFLIPMFRHIKDQRP 616

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +IM P   LA Q ++  K + +   +      G  P   +   L+R     
Sbjct: 617 LENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKR----G 672

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A I++ T     D +           ++  V++DE  R           K      ++  
Sbjct: 673 AEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMK------IMAN 726

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K    KP++ V+   + +   I ++  V +E KK   
Sbjct: 727 VRPDRQTVLFSATFPRNMEALARKTLN-KPVEIVVGGKSVVAPEITQIVEVRNEDKKFVR 785

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  ++L             IHG    ID++S ++
Sbjct: 786 LLELLGNLYSSDENEDARALIFVERQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIE 845

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    +++  +A +     +H+  GR GR     + +  
Sbjct: 846 DFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 904

Query: 596 YHPP-----------LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM--P 642
                          L ++       ++   D F      L++ K G+      SG    
Sbjct: 905 LTEDQERFSVDIAKALKQSGQKVPEPVQQMVDSF------LEKVKAGK-EKASASGFGGK 957

Query: 643 KFLIAQPELHDSLLEIAR 660
                  E   + +   R
Sbjct: 958 GLERLDQERDAARMRERR 975


>gi|330014982|ref|ZP_08308018.1| ATP-independent RNA helicase DbpA [Klebsiella sp. MS 92-3]
 gi|328532472|gb|EGF59268.1| ATP-independent RNA helicase DbpA [Klebsiella sp. MS 92-3]
          Length = 457

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 173/453 (38%), Gaps = 48/453 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + S T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LNELGYLSMTSVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQHIDPARFE 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +    I + ++ G  P   +R +L+       HII+
Sbjct: 72  TQSLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  + +        R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-QTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P    I  ++ +   IE+    +S   K   +   + + +    
Sbjct: 187 WPAAIAAISGR-VQRNPQTIEIDTVDALP-AIEQQFFEVSRHGKIALLQRLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+   ++++           +H++ GR  R  E    I    P  ++ +     +L+ +
Sbjct: 305 LDIKSLALVVNFELAWDPEVHVHRI-GRTARAGEQGLAISFCAPEEAQRATILADMLQLS 363

Query: 615 ED------GFLIAEEDLKQ------------RKEGEILG--IKQSGMPKFLIAQPELHDS 654
            +      G  IA    +              + G++LG      G     I +  +H +
Sbjct: 364 LNWLPAPTGNTIAPLTAEMATLCIDGGKKAKMRPGDVLGALTGDMGFDGADIGKITVHPA 423

Query: 655 --LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
              + I +  A+    Q  +   ++G+S R+ L
Sbjct: 424 HVYVAIRQNMAQKAYKQLQN-GKIKGKSCRVRL 455


>gi|257815096|gb|ACV69940.1| vasa [Osphronemus goramy]
          Length = 653

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 140/404 (34%), Gaps = 59/404 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 240 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQQLMADGVAASRFSEL 293

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K++  T +   ++ G +  AH+ + + R  +    ++
Sbjct: 294 QEPEALIVAPTRELINQIYLEARKFSFGTCVRPVVVYGGVSTAHQIREISRGCN----VL 349

Query: 380 IGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L      ++DE  R                    M +    +T
Sbjct: 350 CGTPGRLLDVIGRGKVGLSKLRYLVLDEADRMLDMGFEP--DMRRLVGSPGMPSKENRQT 407

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI ++         +   +  +      +E+  V +++  K   +   ++ 
Sbjct: 408 LMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFVQVTKFSKREQLLDLLKT 467

Query: 495 ------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +           IHG     ++E  +  F++G C +L+AT
Sbjct: 468 TGTERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVAT 527

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--------- 599
           +V   G+D+ D   ++  +        +H++ GR GR       +  Y P          
Sbjct: 528 SVAARGLDIPDVQHVVNFDLPSNIDEYVHRI-GRTGRCGNTGRAVSFYDPEADGHLARSL 586

Query: 600 ---LSKNSYTRLSVLKN------TEDGFLI-----AEEDLKQRK 629
              LSK      S L+       +  GF       A  D +QR 
Sbjct: 587 VGVLSKAQQEVPSWLEEAAFSGPSSTGFNPPRKNFASTDTRQRG 630


>gi|229091449|ref|ZP_04222660.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42]
 gi|228691890|gb|EEL45636.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42]
          Length = 454

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|94501739|ref|ZP_01308253.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
 gi|94426139|gb|EAT11133.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
          Length = 449

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 133/354 (37%), Gaps = 40/354 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------ 318
           +  + F+  T  Q+  I + L+      +   ++    GSGKT   ++ M   +      
Sbjct: 15  IEALGFTKATDVQQQTIPEALK------QQDLMVCARTGSGKTAAFVVPMLQHLLTHKAP 68

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            +G +A+I+ P   LA+Q  +  +   + T I   +ITG      +     +       I
Sbjct: 69  NSGTRALILVPTRELAKQLLKQCQALAKFTGIQSGMITGGQEFKFQAALFRK----NPEI 124

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           II T     D ++  K         IL   D     G ++ +     A +          
Sbjct: 125 IIATPGRLIDHLKQKKDLMEDVEYFILDEADRMLDMGFEEDVLTIANACSGKA------- 177

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
            P+TL+ ++       K   K     P + V+         IE+  ++  + K    I  
Sbjct: 178 KPQTLLFSATLQQRGLKHVIKQIQNDPEEIVVDSFRGEHSNIEQHYMLADDDKHKQRILT 237

Query: 491 QIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            +   +E        N +   E+      +    +  +HG M+  ++  VM   +NG  K
Sbjct: 238 WLLSNEEYRQAIIFTNTKEKTEQTYHFLSYHNVEVGYLHGDMTQDERNHVMTQMRNGRFK 297

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +L+AT V   G+D+    ++I  +    G   +H++ GR GR E   S I L  
Sbjct: 298 VLVATDVAARGLDIQSIDLVINFDMARSGDDYVHRI-GRTGRAEASGSAISLID 350


>gi|71995724|ref|NP_490761.2| hypothetical protein Y65B4A.6 [Caenorhabditis elegans]
 gi|31746585|gb|AAK29954.2| Hypothetical protein Y65B4A.6 [Caenorhabditis elegans]
          Length = 399

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/341 (21%), Positives = 133/341 (39%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ AI  IL+          I Q   G+GKT    I++  +++      QA+I++
Sbjct: 48  KPSAIQQRAIPAILK------ARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILS 101

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 102 PTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQ----HVVSGTPGRVFD 157

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G +++L    +       V+L++AT     L +T
Sbjct: 158 MIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMT 217

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + ++R +   + L  +       Y      +   
Sbjct: 218 SKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDL-------YDTLTITQAVL 270

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+      +    +++ +HG M   D++ VM  F+ GT ++LI+T V   G+D
Sbjct: 271 FCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLD 330

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   S++I  +  +     +H++ GR GR       I    
Sbjct: 331 VPQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVK 370


>gi|329923450|ref|ZP_08278932.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
 gi|328941342|gb|EGG37636.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
          Length = 538

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 88/382 (23%), Positives = 151/382 (39%), Gaps = 32/382 (8%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
           +      + ++ +  +K+       PT  Q+ +I  +LQ          I +   G+GKT
Sbjct: 10  RLPNFQQLGIDEQRVRKLKEQGITEPTPVQQESIPLLLQGKDV------IARAKTGTGKT 63

Query: 308 LVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKK--YTQNTQIIVEIITGNMPQA 362
           L  ++ +   ++   A  QA+I+AP   LA Q  E  KK    +   I +  + G     
Sbjct: 64  LAFMLPILQHIDPKRAYPQALIIAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVE 123

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
            + + LE    G   +IIGT     D ++   L L  V +       Q L +        
Sbjct: 124 KQLRKLE----GGRQLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDEVEA 179

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKVVLSE 481
             L+ A P  R  +L S       K        +P+  VI   + I  E I+++ V  ++
Sbjct: 180 --LIHALPYRRQTMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLEQIQQVVVECTD 237

Query: 482 GKKAYWICPQIEEKK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
             K   +   IEE        F     R  +L+E   +       +HG +S   +E+VM 
Sbjct: 238 RSKQDALRAMIEEHNPFLAIIFCRTKRRATTLNEALLAHGYQSDELHGDLSQAKREAVMK 297

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F+    +LL+AT V   G+DV   + +   +  H   + +H++ GR GR       I  
Sbjct: 298 RFREAKLQLLVATDVAARGLDVEGVTHVFNYDMPHDVESYIHRI-GRTGRAGGSGMAI-- 354

Query: 596 YHPPLSKNSYTRLSVLKNTEDG 617
                +  +   L+ L+  E+G
Sbjct: 355 -----TFAAGKDLNDLQRIEEG 371


>gi|228985558|ref|ZP_04145712.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774135|gb|EEM22547.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 454

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEQAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +         IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|225420023|ref|ZP_03762326.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme
           DSM 15981]
 gi|225041279|gb|EEG51525.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme
           DSM 15981]
          Length = 552

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/345 (19%), Positives = 130/345 (37%), Gaps = 38/345 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---------EAGGQ 323
           PT  QE AI  +L           +     G+GKT    I     +         +   +
Sbjct: 24  PTPIQEEAIPVVLSGRD------LLGCAQTGTGKTAAFAIPTLQMLSGEETPRWEKRTIK 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA Q Y+    Y Q T +   ++ G + Q  + + L+R       I++ T 
Sbjct: 78  ALVVTPTRELAIQIYDSFNTYGQFTDLKSCVVYGGVSQKPQEENLKR----GVDILVATP 133

Query: 384 ALFQDSIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D +        K+ ++++DE  R      +   +K      ++       +TL  +
Sbjct: 134 GRLLDLMDQKIVNIEKIKILVLDEADRMLDMGFIHDVKK------IIARTPAEKQTLFFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-- 496
           +    DI+K+  K   + P K  I P     E IE+    + +G K   +   ++ K   
Sbjct: 188 ATMPPDIAKLAAK-ILKNPEKIEITPAATTVEAIEQYLYFVDKGNKKDLLLHILKTKDLD 246

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  +   +R              IHG  S   ++  ++ FK+   ++L+AT +  
Sbjct: 247 STLVFTRTKHGADRVVRQLSKSNVVAQAIHGDKSQGARQRALNDFKDKKLRVLVATDIAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            GID+ + + ++  +        +H++ GR GR       I    
Sbjct: 307 RGIDIDELACVVNYDLPDVPETYVHRI-GRTGRAGLEGIAISFCD 350


>gi|89256685|ref|YP_514047.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315095|ref|YP_763818.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502845|ref|YP_001428910.1| DEAD/DEAH box helicase domain-containing protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010493|ref|ZP_02275424.1| hypothetical protein Ftulh_07207 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367994|ref|ZP_04984014.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica 257]
 gi|290954278|ref|ZP_06558899.1| DEAD/DEAH box helicase domain-containing protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295312305|ref|ZP_06803094.1| DEAD/DEAH box helicase domain-containing protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89144516|emb|CAJ79831.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129994|gb|ABI83181.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253804|gb|EBA52898.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica 257]
 gi|156253448|gb|ABU61954.1| DEAD/DEAH box helicase domain protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 569

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 151/382 (39%), Gaps = 45/382 (11%)

Query: 269 IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM-----AAAVEAGG 322
           + +  PT  Q+ AI  IL           + Q   G+GKT    + +      A+ +   
Sbjct: 25  LGYENPTPIQQYAIPYILSGRDV------LGQAQTGTGKTAAFALPLINNMDLASRDRAP 78

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E  + + +N   + V  I G      + +AL++       +++G
Sbjct: 79  QVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQ----GVKVVVG 134

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I+           L+L   DE  R G    ++      +            +
Sbjct: 135 TTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVQFVLSHVSEQC---------Q 185

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ I E+   R P K  +    +    + +  +V+   +K   +   +E
Sbjct: 186 RLLFSATIPTDIADIIEEYL-RNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLE 244

Query: 494 EKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            ++            S +E  ++L       +A I+G M    +E ++D F++    +L+
Sbjct: 245 TEETDGVIIFVKTKTSTIEVADNLK-ALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V+  GID+   S +I  +  +     +H++ GR GR     + I L      +   T
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRI-GRTGRAGREGTSISLVPLKEMRFLRT 362

Query: 607 RLSVLKN-TEDGFLIAEEDLKQ 627
                 +  ++ F+ + +DL Q
Sbjct: 363 LERFTGSPMQEVFMPSAKDLAQ 384


>gi|292488330|ref|YP_003531212.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora CFBP1430]
 gi|292899529|ref|YP_003538898.1| ATP-independent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291199377|emb|CBJ46494.1| ATP-independent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291553759|emb|CBA20804.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora CFBP1430]
          Length = 459

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/451 (17%), Positives = 169/451 (37%), Gaps = 59/451 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q  ++  IL     +       Q   GSGKT    + +   V+A     QA+++ P 
Sbjct: 27  TPVQAESLPAILAGRDVR------AQAKTGSGKTAAFGLGVMHRVDASQYVTQALVLCPT 80

Query: 331 GILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + +++  + T  I +  + G  P   +R +L        HI++GT     D 
Sbjct: 81  RELADQVTKELRRLARFTSNIKILTLCGGQPVGAQRDSLLHA----PHIVVGTPGRILDH 136

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +Q   L L  +          R+           ++  +    +TL+ ++     I++I+
Sbjct: 137 LQRETLKLDAI-NTLVLDEADRMLEMGFREDIDAIISHSPQTRQTLLFSATWPQAIAQIS 195

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSV 503
           +    R P+      ++ +   IE+     +  +K   +   + E++        N +  
Sbjct: 196 QS-IQRNPLTIETGDVSDLP-AIEQTFYEAASREKLTALIGLLSERQPSSCVVFCNTKRE 253

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +      +    S   +HG +   +++ ++  F NG+C++L+AT V   G+D+    ++
Sbjct: 254 CDDIAYALDKAQISAQPLHGDLEQRERDQMLIRFANGSCRVLVATDVAARGLDIKALPMV 313

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN---------- 613
           +           +H++ GR  R  +    +    P     ++     L+           
Sbjct: 314 VNYQLSFDPEVHVHRI-GRTARAGQEGCAVSFVSPDEMIRAHALEDYLQQKLVWCNLSAL 372

Query: 614 ---------------TEDGFLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELH--DS 654
                          + DG   A    K R  G+ILG      G+    + + ++    +
Sbjct: 373 KSVAARPLLAEMVTVSLDGGRKA----KIR-PGDILGALTGDGGLSGDQVGKIDIAPTLA 427

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            + I R+ A+ ++ Q      ++G+S R  L
Sbjct: 428 YVAIRRELARKVMQQL-QQVKIKGKSCRARL 457


>gi|301118572|ref|XP_002907014.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262108363|gb|EEY66415.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 2091

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/466 (19%), Positives = 178/466 (38%), Gaps = 52/466 (11%)

Query: 172  KKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYD 231
            ++  +E L       E    D   K ++ S  + F ++  P++ KD        +R   +
Sbjct: 1421 QRSALEILQDQQKKKEIKPVD-HSKMNYISFQKKFYVV--PKEIKDLSDEEVEAQRKVAE 1477

Query: 232  ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
              + G+     ++K  +    +      ++ Q I ++    P   Q+ A+  I+      
Sbjct: 1478 MKVRGKNCPRPLQKWTQCGFSV------RMLQLIKKHGYEEPFAIQKQALPAIMSGRDV- 1530

Query: 292  NRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKK 343
                 I     GSGKTL  L+ M   V A        G   +IMAP   LAQQ Y   +K
Sbjct: 1531 -----IGIAKTGSGKTLAFLLPMFRHVLAQPPLQENEGPIGIIMAPARELAQQIYVEARK 1585

Query: 344  YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD--------SIQYYKL 395
            +++   +    + G    + +   L+R     + I+I T     D         +   ++
Sbjct: 1586 FSKGLGLRATAVYGGSSVSEQIANLKR----GSDIVICTPGRMIDILCMSAGKMVSLQRV 1641

Query: 396  ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
              V++DE  R           K      ++M   P  +TL+ ++     +  +  K   +
Sbjct: 1642 TYVVLDEADRMFDMGFEPQITK------IMMNIRPDRQTLLFSATFPRSVESLARK-VLK 1694

Query: 456  KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--------SNFRSVVERF 507
            KP++  +   +     I +   V  E  K   +   +    E        +  ++  + F
Sbjct: 1695 KPVEITVGTRSTASGDITQYVEVREEDDKFMRLLQLLGLWYEKGNILVFVNKQQACDQIF 1754

Query: 508  NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
              L +    ++++  G+   +D++  +D FK     +++AT+V   G+DV D  ++I  +
Sbjct: 1755 QDLMKAGYPALSLHGGK-DQVDRDYTIDDFKRKVRTVMVATSVAGRGLDVKDLVLVINYH 1813

Query: 568  AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
              +     +H++ GR GR     +      P   + S   +  L+N
Sbjct: 1814 CPNHMEDYVHRV-GRTGRAGRKGTAYTFISPDEEEYSVDLVKALEN 1858


>gi|229011722|ref|ZP_04168904.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048]
 gi|229167295|ref|ZP_04295034.1| ATP-dependent RNA helicase [Bacillus cereus AH621]
 gi|228616171|gb|EEK73257.1| ATP-dependent RNA helicase [Bacillus cereus AH621]
 gi|228749519|gb|EEL99362.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048]
          Length = 450

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PDSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYME-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 VSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|195355988|ref|XP_002044465.1| GM11962 [Drosophila sechellia]
 gi|194131630|gb|EDW53672.1| GM11962 [Drosophila sechellia]
          Length = 946

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 140/383 (36%), Gaps = 46/383 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L        ++ I Q   GSGKTL  ++     +          G  
Sbjct: 260 KPTAIQSQGWPIAL----SGRDLVGIAQ--TGSGKTLAYMLPAIVHIGNQPPIIRGEGPI 313

Query: 324 AVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           A+++AP   LAQQ    ++ Y      +I    I G   +  + + L+R       +II 
Sbjct: 314 ALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDR----GVEVIIA 369

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPI 431
           T     D ++           L+L   D     G   Q R  + Q      V++ +AT  
Sbjct: 370 TPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSATWP 429

Query: 432 PRTLVLTSLGDIDISKI----TEKPAGRKP-----IKTVIIPINRIDEVIERLKVVLSEG 482
                L      D  +I        A         I T I    R+  ++  +  +   G
Sbjct: 430 KEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEISPIKKSG 489

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                I   +E       +  VE    +      +   IHG  +  +++SV+  F+NG  
Sbjct: 490 SNGNKIIVFVET------KIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKS 543

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +LIAT V   G+DV D   +I  +  +     +H++ GR GR +++ +    + P  +K
Sbjct: 544 NILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRI-GRTGRCQQLGTAYTFFTPDNAK 602

Query: 603 NSYTRLSVLKNTEDGFLIAEEDL 625
            +   +SVL+        A  DL
Sbjct: 603 QARELISVLEEAGQTPSQALLDL 625


>gi|226480840|emb|CAX73517.1| ATP-dependent RNA helicase DDX3X [Schistosoma japonicum]
          Length = 637

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 137/373 (36%), Gaps = 44/373 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-------------AAVE 319
           PT  Q+ AI  I            +     GSGKT   LI +              A ++
Sbjct: 196 PTPVQKHAIPIIASGRD------LMACAQTGSGKTAAFLIPILNNMIKQGPGDSICATID 249

Query: 320 AGGQ-----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           +  +     A+I+AP   LA Q ++  +K++  + I   ++ G    A  R  L  ++ G
Sbjct: 250 SNRRKQFPVALILAPTRELASQIFDDARKFSYRSSIRPCVLYGG---ADMRTQLMELSKG 306

Query: 375 QAHIIIGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             ++++ T     D ++  ++ L      ++DE  R          ++      L  +  
Sbjct: 307 -CNVLVATPGRLSDVLERGRVGLDYCRFLVLDEADRMLDMGFEPQIRRIVEQDALPPS-- 363

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              +TL+ ++    +I  + +         T +  +    E I +  + + E  K   + 
Sbjct: 364 GERQTLMFSATFPHEIQILAKDFLSSYIFLT-VGRVGSTSENITQTILWVEENAKRDALI 422

Query: 490 PQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +   +           +   +   +        +A IHG  +  D+E  +  F++G  
Sbjct: 423 DLLANSEAGTLTLVFVETKRGADALENYLYSQKFQVASIHGDRTQEDRELALSCFRSGRT 482

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++     
Sbjct: 483 PVLVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRI-GRTGRVGNLGLATSFFNDKNRN 541

Query: 603 NSYTRLSVLKNTE 615
            +   + +L+   
Sbjct: 542 LARGLVELLEEAN 554


>gi|312882439|ref|ZP_07742180.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369839|gb|EFP97350.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 452

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 146/378 (38%), Gaps = 42/378 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           +  + + +P+  Q+ AI  +L           +     G+GKT    + +   ++     
Sbjct: 16  IEELGYDTPSPIQKQAIPAVLSGKDV------MAAAQTGTGKTAGFTLPILERLDNNQRV 69

Query: 321 ---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                +A+I+ P   LA Q  E + KY+++ ++  +++ G +    +   L +       
Sbjct: 70  KGNHVRALILTPTRELAAQIQENVFKYSRHQRLTSQVVFGGVKINPQMMKLRK----GCD 125

Query: 378 IIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +++ T     D     +I++ +L ++++DE  R      +   +K      +L       
Sbjct: 126 VLVATPGRLMDLYQQKAIKFDQLEVLVLDEADRMLDMGFIHDIRK------ILNLLPKKR 179

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           + L+ ++    +I ++  K     P++  + P N     +E+      + +KA  +   I
Sbjct: 180 QNLLFSATFSAEIRQLA-KGLVNDPVEISVTPQNSTAVTVEQSVYPADKRQKAPMLVELI 238

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            + K          +    R          + A IHG  S   +   +  FK G  ++L+
Sbjct: 239 TQGKWQQVLVFCRTKHGANRLAQFLNKAEITAAAIHGNKSQGARTRALSEFKTGEIRVLV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT +   GID+     ++  +  +     +H++ GR GR  E      L     + + + 
Sbjct: 299 ATDIAARGIDIPQLPQVVNFDLPNVAEDYVHRI-GRTGRAGEAGKAFSLVEADEASDLFG 357

Query: 607 RLSVLKN-----TEDGFL 619
              +++      T +GF 
Sbjct: 358 IERLIQKVLPRFTLEGFQ 375


>gi|291276231|gb|ADD91316.1| vasa [Seriola quinqueradiata]
          Length = 650

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/355 (17%), Positives = 126/355 (35%), Gaps = 36/355 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 237 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQQLMADGVAASQFSEL 290

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K+   T +   ++ G +   H+ + + R  +    ++
Sbjct: 291 QEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREICRGCN----VL 346

Query: 380 IGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D      +  +KL  +++DE  R                    M +    +T
Sbjct: 347 CGTLGRLLDVIGRGKVGLHKLRYLVLDEADRMLDMGFEP--DMRRLVGSPGMPSKEKRQT 404

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI ++         +   +  +      +E+  + +++  K   +   ++ 
Sbjct: 405 LMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQKFIEVTKFSKREQLLDILKT 464

Query: 495 ------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +           IHG     ++E  +  F++G C +L+AT
Sbjct: 465 TGTERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGRCPVLVAT 524

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +V   G+D+ D   ++  +  +     +H++ GR GR       +  Y P     
Sbjct: 525 SVAARGLDIPDVQHVVNFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFYDPDNDGQ 578


>gi|213406193|ref|XP_002173868.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001915|gb|EEB07575.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces japonicus
           yFS275]
          Length = 553

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 135/372 (36%), Gaps = 44/372 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
           + + F  PT  Q+ A    +        M+ I     GSGKTL   +     + A     
Sbjct: 142 QALGFESPTPIQQQAWPMAM----SGRDMVGI--SATGSGKTLSYCLPAIVHINAQPLLA 195

Query: 321 ---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
              G   +++AP   LA Q  +   K+   ++I    + G +P+  + + L R       
Sbjct: 196 PGDGPIVLVLAPTRELAVQIQQECTKFGHTSRIRNTCVYGGVPRGPQIRDLAR----GVE 251

Query: 378 IIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMT 427
           I I T     D +   K        L+L   D     G + +++    Q       ++ +
Sbjct: 252 ICIATPGRLLDMLDSGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFS 311

Query: 428 ATPIPRTLVLTSLGDIDISKIT------EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           AT       L      D  ++T              I  V+ P ++   + + L+  + +
Sbjct: 312 ATWPKEVQRLARDYLKDYIQVTVGSLDLAASHNITQIVEVVDPADKRARLSKDLEKAMED 371

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            +    +            R   E    L +    ++AI HG  +  +++ V++ F+ G 
Sbjct: 372 KESKVLVFT-------GTKRVADEITRFLRQDGWPALAI-HGDKAQDERDWVLNEFRTGK 423

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +++AT V   GIDV   + +   +        +H++ GR GR     +    +    S
Sbjct: 424 SPIMVATDVASRGIDVKGITHVFNFDFPGNTEDYVHRI-GRTGRAGAKGTAYTYFTQENS 482

Query: 602 KNSYTRLSVLKN 613
           K +   + +L+ 
Sbjct: 483 KQARDLIGILRE 494


>gi|75675849|ref|YP_318270.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
 gi|74420719|gb|ABA04918.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
          Length = 483

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/374 (18%), Positives = 130/374 (34%), Gaps = 43/374 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           SPT  Q+ AI  +L       R   +     G+GKT   ++ M   +E G       + +
Sbjct: 23  SPTPIQDQAIPHVLA------RRDVLGIAQTGTGKTAAFVLPMLTLLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D  +   L+L  V     DE  R      +   ++       +    P  R  +  + 
Sbjct: 133 LLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIER-------ICKLVPFTRQTLFFTA 185

Query: 441 GDIDISKITEKPAGRKPIKTVI---------IPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              +  +         P K  +         +  +++    E  +      +        
Sbjct: 186 TMPNEIRRVTDTFLHNPEKIEVSRPATTAATVAQSQVSCSREPHEKRELLRRLLREAKEL 245

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N +  V       +    S   +HG M    + + +D F+ G   LL+A+ V 
Sbjct: 246 KNAIIFCNRKRDVAIVCKSLQKHGFSAGALHGDMDQSARTASLDQFRKGELPLLVASDVA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ + S ++  +  +     +H++ GR GR     + I +  P      +  L+ +
Sbjct: 306 ARGLDIPEVSHVLNFDVPYHPDDYVHRI-GRTGRAGRTGTAITIVCPAD----FKSLAAI 360

Query: 612 KNTEDGFLIAEEDL 625
           +    G  I + DL
Sbjct: 361 EKLT-GQAIPQADL 373


>gi|312372006|gb|EFR20059.1| hypothetical protein AND_20736 [Anopheles darlingi]
          Length = 850

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 132/387 (34%), Gaps = 44/387 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+ AI  IL           +     GSGKT   L+ +   +   G         
Sbjct: 372 KPTPVQKYAIPIILAGRD------LMACAQTGSGKTAAFLVPILNQMYKHGVSAPPPNRP 425

Query: 323 --------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                     +++AP   LA Q +E  KK+   +++   ++ G      + + L+R    
Sbjct: 426 MNRRKQYPLGLVLAPTRELATQIFEESKKFCYRSRMRPAVLYGGNNTHEQMRELDR---- 481

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAP----- 421
             H+I+ T    +D I   K+ L  +        D     G + +++   + +       
Sbjct: 482 GCHLIVATPGRLEDMITRGKVGLDNIRFLVLDEADRMLDMGFEPQIRRIVEDSRMPVTGE 541

Query: 422 -HVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
              L+ +AT     + L    L       +    +    I   I  +    +    L ++
Sbjct: 542 RQTLMFSATFPKAIQELASDFLYRYIFLAVGRVGSTSVNITQTIFWVEENIKRSHLLDLL 601

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            S   +                +   +        +   +  IHG  S  ++E  +  F+
Sbjct: 602 SSISLQNEGDAANSLTLIFVETKKAADSLEEFLYSYDYPVTSIHGDRSQDEREEALRLFR 661

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G C +L+AT V   G+D+ +   +I  +        +H++ GR GR   + +    ++ 
Sbjct: 662 CGRCPILVATAVAARGLDIPNVKHVINFDLPSEVEEYVHRI-GRTGRMGNLGTATSFFNE 720

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDL 625
                +   + +L  T        ED+
Sbjct: 721 KNRNVANGLVRLLAETGQEIPGFLEDM 747


>gi|302306296|ref|NP_982501.2| AAL041Cp [Ashbya gossypii ATCC 10895]
 gi|299788450|gb|AAS50325.2| AAL041Cp [Ashbya gossypii ATCC 10895]
          Length = 486

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/348 (21%), Positives = 131/348 (37%), Gaps = 33/348 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
             N+ F+ PT  Q  AI   LQ          I     GSGKT    I +   +    Q 
Sbjct: 81  CDNLNFTKPTPIQSKAIPPALQGKD------IIGLAQTGSGKTAAFAIPILNRLWHDQQP 134

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A I+AP   LAQQ  E          +    I G M    + + L R    + HIII 
Sbjct: 135 YYACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMR----KPHIIIA 190

Query: 382 THALFQDSIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           T     D ++        KL  +++DE  R      L +        +L    T    T 
Sbjct: 191 TPGRLMDHLENTKGFALRKLQFLVMDEADRL-----LDMEFGPVLDRILKNIPTKGRTTY 245

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE- 494
           + ++     I K+ ++ +   P+K  +    +  + + +  +V+  G K  ++   + E 
Sbjct: 246 LFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTFLIYLLNEF 304

Query: 495 -----KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   +  ++  ER + L      S   +HG ++   +   +D FK G   +L+AT 
Sbjct: 305 IGKTTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKKSILVATD 364

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   G+D+    ++I  +      + +H++ GR  R       + L  
Sbjct: 365 VAARGLDIPSVDLVINYDIPVDSKSYIHRV-GRTARAGRSGKSVSLVS 411


>gi|297736780|emb|CBI25981.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 135/346 (39%), Gaps = 44/346 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-------AAVEAGGQA 324
           SPT  Q       LQ          +     GSGKTL  LI            V+ G   
Sbjct: 13  SPTPIQAQTWPIALQGRD------IVAIAKTGSGKTLGYLIPAFILLRRRRNNVQNGPTV 66

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  +   K+ +++++    + G   +  + K L+R     A +++ T  
Sbjct: 67  MVLAPTRELATQIQDETIKFGRSSRVSCACLYGGTSRNAQLKELDR----GADVVVATPG 122

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRT 434
              D ++  K        L+L   D     G + +++    +       L+ TAT     
Sbjct: 123 RLNDILESKKIDLGQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEV 182

Query: 435 L-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +L +   ++I  + E  A +   + V ++        +E++      G K    
Sbjct: 183 RKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVSPPEKQRRLEQILRSQERGSKVIIF 242

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C        S  +   +   S+  +F +++  IHG  S ++++ V++ F++G   +L+AT
Sbjct: 243 C--------STKKLCDQLARSIGRNFGAAV--IHGDKSQVERDWVLNQFRSGKSPILVAT 292

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            V   G+D+ D  ++I  +        +H++ GR GR         
Sbjct: 293 DVAARGLDIKDIRVVINYDFPTGIEDYVHRI-GRTGRAGATGWAWF 337


>gi|255017210|ref|ZP_05289336.1| hypothetical protein LmonF_04463 [Listeria monocytogenes FSL
           F2-515]
          Length = 394

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 132/348 (37%), Gaps = 35/348 (10%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
             + F   T  QE  I   L+          I Q   G+GKT    + M   ++      
Sbjct: 18  NRMGFEEATPIQEKTIPLGLEGKD------LIGQAQTGTGKTAAFGLPMIHKIDQKSNNV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+AP   LA Q  E + K + +  + V  + G    + + ++L++       I++GT
Sbjct: 72  QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK----NPQIVVGT 127

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L L  V        DE    G    +   L +       LL +AT P 
Sbjct: 128 PGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMPD 187

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    +   ++ +I  K      I+   + ++  ++     +++  +  +   +  
Sbjct: 188 PIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +   +        IHG ++   + SV+  FK G   +L+AT V
Sbjct: 248 RT--------KRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   + +   +      + +H++ GR GR  +    I    P
Sbjct: 300 AARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGMAITFVQP 346


>gi|229100254|ref|ZP_04231145.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29]
 gi|229115941|ref|ZP_04245337.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3]
 gi|228667530|gb|EEL22976.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3]
 gi|228683149|gb|EEL37136.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29]
          Length = 450

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|42781571|ref|NP_978818.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42737494|gb|AAS41426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 447

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 130/348 (37%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 26  TPIQEKAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPT 79

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 80  RELALQITNEIKKMLVQRDDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 135

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 136 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 194

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    I         IE+  +  ++  K     ++  + +      F     R
Sbjct: 195 KRYMD-EPQMIQIQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 253

Query: 507 FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L++         A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 254 ASKLYDDLKGRGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 313

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 314 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 360


>gi|318056099|gb|ADV36250.1| Vasa [Gadus morhua]
          Length = 644

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 134/366 (36%), Gaps = 37/366 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 230 KPTPVQKHGIPIIAAGRD------IMACAQTGSGKTAAFLLPILQKLMADGVAASSFSEQ 283

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q +   +K+   T +   ++ G +   H+ + L R  +    ++
Sbjct: 284 QEPEAIIVAPTRELINQIFLEARKFAHGTCVRPVVLYGGISTGHQIRDLLRGCN----VL 339

Query: 380 IGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L      ++DE  R          +         M +    +T
Sbjct: 340 CGTPGRLMDMIGRGKVGLTKLRYLVMDEADRMLDMGFEP--EMRRLVGSPGMPSKEERQT 397

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE- 493
           L+ ++    DI ++      +  +   +  +      +E+  V +++  K   +   ++ 
Sbjct: 398 LMFSATYPEDIQRMAGDFLKKDYLFLAVGVVGGACSDVEQKLVQVTKFSKRDQLLDILKN 457

Query: 494 -----EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +       +   IHG     ++E  +  F++G C +L+AT
Sbjct: 458 TGTERTMVFVETKRQADFIAAFLCRENVATTSIHGDREQREREQALGDFRSGKCPVLVAT 517

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN-SYTR 607
           +V   G+D+ D   ++  +  +     +H++ GR GR       +  Y P      + + 
Sbjct: 518 SVAARGLDIKDVQHVVNFDLPNNIDDYVHRI-GRTGRCGNTGQAVSFYDPEQDNQLARSL 576

Query: 608 LSVLKN 613
           + +L +
Sbjct: 577 VKILCS 582


>gi|313235130|emb|CBY25002.1| unnamed protein product [Oikopleura dioica]
          Length = 653

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 128/365 (35%), Gaps = 40/365 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------------E 319
           PT  Q+ A+  I            +     GSGKT   L+ M + +             +
Sbjct: 220 PTPVQKYAVPIIHAGRD------IMSCAQTGSGKTAAFLMPMLSNIFHNPGKIPRHQSRK 273

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           A   A++++P   L  Q Y+   K+   +++   +I G      + + L R      H++
Sbjct: 274 AYPLALVLSPTRELTNQIYQEALKFAYRSKVRPCVIYGGADVGEQLRDLSR----GCHLL 329

Query: 380 IGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T     D ++  K+ L       +DE  R          ++     +         +T
Sbjct: 330 VATPGRLADFLERGKVGLEFCRFLCLDEADRMLDMGFEPQIRRIIEKVIFPS----DRQT 385

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I  +         I   +  +      I +    + E +K   +C  +E 
Sbjct: 386 LMFSATFPKQIQALASDFLD-NYIFLAVGRVGSTSANITQRFEYVQETEKVRKLCELLEN 444

Query: 495 KKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +E         +   +  +            IHG  +  ++E  +  FK+G   +L+AT
Sbjct: 445 GQEMLTIVFTETKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFKSGQTPILVAT 504

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR          Y+   +K S   L
Sbjct: 505 AVAARGLDIPNVRHVINFDLPSEIDEYVHRI-GRTGRAGNTGWATAFYNEKNAKISDDLL 563

Query: 609 SVLKN 613
            +L  
Sbjct: 564 QLLTE 568


>gi|153810840|ref|ZP_01963508.1| hypothetical protein RUMOBE_01224 [Ruminococcus obeum ATCC 29174]
 gi|149833236|gb|EDM88318.1| hypothetical protein RUMOBE_01224 [Ruminococcus obeum ATCC 29174]
          Length = 164

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 102/160 (63%), Gaps = 1/160 (0%)

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M+ F     ++L++TTV+EVG++V +A+++++ENAE FGLAQLHQLRGRVGRGE  S CI
Sbjct: 1   MEKFAANEIQVLVSTTVVEVGVNVPNATVMMVENAERFGLAQLHQLRGRVGRGEYQSYCI 60

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
            +        S  RL +L  + DGF IA EDLK R  G++ GI+QSG  +F I       
Sbjct: 61  FIQGSDEETTS-KRLDILNKSNDGFYIAGEDLKLRGPGDLFGIRQSGDMEFRIGDIYNDS 119

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
           ++L+ A + A  IL+ DPDL+  + ++++  L   Q N +
Sbjct: 120 AILKSASEAAAEILSLDPDLSLEQHRALKHYLLKRQENAS 159


>gi|59711751|ref|YP_204527.1| DNA and RNA helicase [Vibrio fischeri ES114]
 gi|59479852|gb|AAW85639.1| DNA and RNA helicase [Vibrio fischeri ES114]
          Length = 431

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/356 (17%), Positives = 130/356 (36%), Gaps = 27/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
             T  Q+ AI    +          +     G+GKT    + +   +            +
Sbjct: 23  KLTPIQQKAIPLARKGHD------ILANAQTGTGKTAAFALPVIQQLLDSKKSATRRTAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA+Q    I  Y + T + V  + G    + + +ALE        I++ T 
Sbjct: 77  ALILAPTRELAEQIAVNIADYIKYTSLTVTSVFGGKKMSSQERALEP----GVDILVATP 132

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
              Q+ I+   + +  + E   F    R+       A   ++M     P+ ++ ++    
Sbjct: 133 GRLQEHIEEENVSIANL-EFLVFDEADRMLDMGFVNAIRNIMMEVNTSPQIMLFSATSSA 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---F 500
            ++K+      RKP +  + P N     I  +   + E +K   +   I  K       F
Sbjct: 192 QMNKLASD-ILRKPKRISVDPENTTASTIAHVVYPVDEERKTELLSELIGRKNWQQVLVF 250

Query: 501 RSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +  E  N + +          + HG  +   +   ++ FK G  ++++AT V   G+D+
Sbjct: 251 VNYKETANEIVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATDVAARGLDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            D   +I  +        +H++ GR GR  +    +               ++++ 
Sbjct: 311 ADLPHVINYDMPFLAEDYVHRI-GRTGRAGKKGHAVSFVSREEELTVVQVETLIQQ 365


>gi|67539522|ref|XP_663535.1| hypothetical protein AN5931.2 [Aspergillus nidulans FGSC A4]
 gi|74657087|sp|Q5B0J9|DBP2_EMENI RecName: Full=ATP-dependent RNA helicase dbp2
 gi|40738604|gb|EAA57794.1| hypothetical protein AN5931.2 [Aspergillus nidulans FGSC A4]
 gi|259479898|tpe|CBF70542.1| TPA: ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B0J9] [Aspergillus
           nidulans FGSC A4]
          Length = 563

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 82/430 (19%), Positives = 152/430 (35%), Gaps = 47/430 (10%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-- 269
           P+  K F    P     +  E+   +    +  +       +    E    Q +L  +  
Sbjct: 98  PKFEKSFYKEHPDVTARSQREVDEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVLSEVKA 157

Query: 270 -PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------- 320
             F  PT  Q       L           +   + GSGKTL   +     + A       
Sbjct: 158 QGFEKPTAIQSQGWPMALSGRDV------VGIAETGSGKTLSYCLPAIVHINAQPLLAPG 211

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G   +I+AP   LA Q    I K+ ++++I    + G +P+  + + L R       + 
Sbjct: 212 DGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSR----GVEVC 267

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT 429
           I T     D ++  +        L+L   D     G   Q R  ++Q        + +AT
Sbjct: 268 IATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSAT 327

Query: 430 PIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGK 483
                R L    L +     I           T I+ +     + D +I+ L+ ++    
Sbjct: 328 WPKEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIKHLEKIMENRG 387

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +            R   E    L +    +++I HG     +++ V++ FK G   
Sbjct: 388 NKCLVFT-------GTKRIADEITRFLRQDGWPALSI-HGDKQQQERDWVLNEFKTGKSP 439

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +++AT V   GIDV D + +I  +  +     +H++ GR GR     + I  +    +K 
Sbjct: 440 IMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRI-GRTGRAGAKGTAITFFTTDNAKQ 498

Query: 604 SYTRLSVLKN 613
           +   +++L  
Sbjct: 499 ARDLVTILSE 508


>gi|304437212|ref|ZP_07397172.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369704|gb|EFM23369.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 426

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 134/351 (38%), Gaps = 22/351 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE AI  +            I Q   G+GKTL  L+ + A ++  G   QA+++A
Sbjct: 24  QPTPVQEQAIPPMRAGRDV------IAQAQTGTGKTLAYLLPLLARIKPQGAAAQALVIA 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q     +   Q   I   +I G      +++ L R       ++IGT     D
Sbjct: 78  PTRELAIQIERVAEPLAQPLGIGTVVIYGGADIERQKEKLRRS----PQLVIGTPGRLLD 133

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++   L L  V++       + LK+         LL  A    +  + ++     I ++
Sbjct: 134 HVRRGTLALGSVNKVVLDEADEMLKMGFI-EDVETLLGAAAQDYQLALFSATMPERIVRL 192

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVE 505
           T++     P    +         IE++ + +S G K   +C  I E+       F +  E
Sbjct: 193 TKRFMT-NPAHIRLAGETVTLAAIEQVVIPVSAGDKLDRLCASINEEAPYLAMVFCATKE 251

Query: 506 RFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           R  +L          +  + G ++   +  V+  F++   ++L AT +   G+D+   + 
Sbjct: 252 RTRALMMELAQRGYLVDALSGDLTQTQRSFVLRQFRSAKLQILCATDIAARGLDIEGVTH 311

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           +   +        +H++ GR GR       I L  P   +      + LK 
Sbjct: 312 VYNYDLPPTVTDYIHRI-GRTGRAGTQGKAITLVAPHQHEKLRKMEAALKA 361


>gi|281203069|gb|EFA77270.1| DEAD/DEAH box helicase domain-containing protein [Polysphondylium
           pallidum PN500]
          Length = 1147

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 132/368 (35%), Gaps = 34/368 (9%)

Query: 269 IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQA 324
             F  P+  Q+ AI  I++          I Q   G+GKT    I    +++      Q 
Sbjct: 66  FGFEKPSAIQQRAILPIIKGHDT------IAQAQSGTGKTATFSIGALQSIDVSVKSPQV 119

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I++P   LAQQ  + +        + V    G    A   + LE       HI+ GT  
Sbjct: 120 LILSPTRELAQQIQKVLMALGGFMSVQVHAFVGQKTIAEDLRRLEA----GVHIVSGTPG 175

Query: 385 LFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRT 434
              D I    L        IL   DE    G QQ++         A  ++L++AT     
Sbjct: 176 RVLDLISRKALATRHIKMLILDEADEMLGLGFQQQINDVYRYLPPATQIVLVSATLTQDV 235

Query: 435 LVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           + +T     D  +I         + IK   + + +     E     L +   +  I   +
Sbjct: 236 INMTEKFMTDPVRILLKRDELTLEGIKQFFVSVEKE----EWKFGTLCDIYDSLTITQAV 291

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N +  V            ++A +HG M   ++E ++ SF++G  ++LI T ++ 
Sbjct: 292 ---IFCNTKQKVNILTDKMREANFTVASMHGDMEQKEREEIIKSFRSGENRVLITTDILA 348

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GIDV   S++I  +  +     +H++ GR GR       I        +          
Sbjct: 349 RGIDVQQVSLVINYDLPNDRENYIHRI-GRSGRFGRKGVAINFVKSSDIRILRDIEQFYS 407

Query: 613 NTEDGFLI 620
              D   +
Sbjct: 408 TQIDEMPL 415


>gi|220931392|ref|YP_002508300.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H
           168]
 gi|219992702|gb|ACL69305.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H
           168]
          Length = 527

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/351 (22%), Positives = 129/351 (36%), Gaps = 44/351 (12%)

Query: 267 RNIPFSPT-KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
            ++ F  T   Q  AI  IL           I Q   G+GKT    I +   ++      
Sbjct: 20  EDMGFEETTPIQTKAIPPILNGKD------IIGQAQTGTGKTAAFGIPLLEKIDTRNKKP 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+I+ P   LA Q  E +K+  +  + +  + + G      + KAL++       +IIG
Sbjct: 74  QAIILCPTRELAIQVAEELKRLAKYKRSLYTLPVYGGQSIKRQIKALKK----GVQVIIG 129

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D ++   L L  +        D     G    +   L         L  +AT I
Sbjct: 130 TPGRVMDHMRRGTLNLSHINFVVLDEADVMLDMGFIDDIKTILKDIPNDRQTLFFSAT-I 188

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           P T++       D+SK  +K +    I    + +      IE+    +    K   +   
Sbjct: 189 PETIL-------DLSKRYQKKSQFIKIAHEKLTVPG----IEQYYYEVRRSDKLKVLTRL 237

Query: 492 IEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           I+           N R +VE  N   +        +HG  +   ++ VMD F+NG  ++L
Sbjct: 238 IDLYSPGLSLIFCNTRKMVEELNIQLQARGYLSDALHGGFNQNQRDRVMDKFRNGIIEIL 297

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +AT V   GIDV     +   +        +H++ GR GR  +        
Sbjct: 298 VATDVAARGIDVNGVEAVFNYDVPQDTDYYVHRI-GRTGRAGKTGKAFTFV 347


>gi|161723115|ref|YP_438416.2| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
          Length = 465

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 82/460 (17%), Positives = 169/460 (36%), Gaps = 60/460 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 23  LAQLGYTVMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARRFD 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    + V  + G  P   + ++LE      AHII+
Sbjct: 77  VQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIIV 132

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 133 GTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVAR------LCPPTRQTL 186

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   ++  
Sbjct: 187 LFSATYPDGIAKLSQQFLRNP--KEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLKHY 244

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 245 RPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 305 VAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQEGWALSLASMDEMGRVGAIEQ 363

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILG--IKQSGMPKFLIA 647
            L    +   +A              E L+           G++LG     +G     I 
Sbjct: 364 ALGRDVEWHPLAELKADGNEPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGSQIG 423

Query: 648 QP--ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +       + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 424 KINVTEFSTYVALERGIARDALRKL-NAGKIKGKRVKVRL 462


>gi|254510324|ref|ZP_05122391.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221534035|gb|EEE37023.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 455

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 137/353 (38%), Gaps = 46/353 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           SPT  QE AI   L+          +     G+GKT    + M   +  G       +++
Sbjct: 29  SPTPIQEGAIPAALEGRDV------LGIAQTGTGKTASFTLPMITLLARGRARARMPRSL 82

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y ++ ++   ++ G +    +   ++R       ++I T   
Sbjct: 83  VLCPTRELAAQVAENFDTYAKHLKLTKALLIGGVSFKEQDALIDR----GVDVLIATPGR 138

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     ++VDE  R      +   ++       + + TP   +TL  ++
Sbjct: 139 LLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIER-------IFSLTPFTRQTLFFSA 191

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-------KKAYWICPQI 492
               +I +IT+      P +  +       E IE+  V+   G       +K   +   I
Sbjct: 192 TMAPEIERITDTFL-SAPTRVEVARQATASETIEQGVVMFKGGRRDREASQKRKTLRALI 250

Query: 493 EEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           + + +         N ++ V+      + +    A IHG +    +   +D F++GT +L
Sbjct: 251 DAEGDKCTNAIIFCNRKTDVDICAKSLKKYGYDAAAIHGDLDQSQRMKTLDGFRDGTLRL 310

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           L+A+ V   G+DV   S +   +        +H++ GR GR       I +  
Sbjct: 311 LVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRI-GRTGRAGREGKAITICS 362


>gi|27367036|ref|NP_762563.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6]
 gi|27358604|gb|AAO07553.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6]
          Length = 509

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 134/361 (37%), Gaps = 36/361 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  IL+          +     G+GKT    + +   +  G +       A
Sbjct: 23  TPSPIQLQAIPAILEGKDV------MAAAQTGTGKTAGFTLPILERLAKGPRVRANHIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +  Y+++  +   ++ G +    +   L +     A +++ T  
Sbjct: 77  LILTPTRELAAQVQENVFMYSRHLDLNSAVVFGGVKINPQMLRLRK----GADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++I+DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYSQNAVKFDQLEVLILDEADRMLDMGFIRDIRK-------ILALLPAKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     PI+  + P N     +E+        KK   +   I++     
Sbjct: 186 ATFSDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYPADVKKKPAMLAKLIKDGDWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++           +H++ GR GR  E    I L     +   +    +++ 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRI-GRTGRAGETGKAISLVCALEAPELFAIERLIQE 364

Query: 614 T 614
            
Sbjct: 365 L 365


>gi|187931511|ref|YP_001891495.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712420|gb|ACD30717.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 569

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 151/382 (39%), Gaps = 45/382 (11%)

Query: 269 IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM-----AAAVEAGG 322
           + +  PT  Q+ AI  IL           + Q   G+GKT    + +      A+ +   
Sbjct: 25  LGYENPTPIQQYAIPYILSGRDV------LGQAQTGTGKTAAFALPLINNMDLASRDRAP 78

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E  + + +N   + V  I G      + +AL++       +++G
Sbjct: 79  QVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQ----GVKVVVG 134

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I+           L+L   DE  R G    +K      +            +
Sbjct: 135 TTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQC---------Q 185

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ I E+   R P K  +    +    + +  +V+   +K   +   +E
Sbjct: 186 RLLFSATIPTDIADIIEEYL-RNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLE 244

Query: 494 EKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            ++            S +E  ++L       +A I+G M    +E ++D F++    +L+
Sbjct: 245 TEETDGVIIFVKTKTSTIEVADNLK-ALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V+  GID+   S +I  +  +     +H++ GR GR     + I L      +   T
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRI-GRTGRAGREGTSISLVPLKEMRFLRT 362

Query: 607 RLSVLKN-TEDGFLIAEEDLKQ 627
                 +  ++ F+ + +DL Q
Sbjct: 363 LERFTGSPMQEVFMPSAKDLAQ 384


>gi|19113315|ref|NP_596523.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces pombe 972h-]
 gi|10720389|sp|P24782|DBP2_SCHPO RecName: Full=ATP-dependent RNA helicase dbp2; AltName:
           Full=p68-like protein
 gi|173419|gb|AAA35319.1| p68 RNA helicase [Schizosaccharomyces pombe]
 gi|3810840|emb|CAA21801.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces pombe]
          Length = 550

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 137/372 (36%), Gaps = 44/372 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
           + + F  PT  Q+ A    +        M+ I     GSGKTL   +     + A     
Sbjct: 138 KQLGFEAPTPIQQQAWPMAM----SGRDMVGI--SATGSGKTLSYCLPAIVHINAQPLLS 191

Query: 321 ---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
              G   +++AP   LA Q  +   K+ ++++I    + G +P+  + + L R       
Sbjct: 192 PGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIR----GVE 247

Query: 378 IIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMT 427
           I I T     D +   K        L+L   D     G + +++    Q       ++ +
Sbjct: 248 ICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFS 307

Query: 428 ATPIPRTLVLTSLGDIDISKIT------EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           AT       L      D  ++T            K I  V+   ++   + + ++ VL +
Sbjct: 308 ATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKD 367

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 I            R   +    L +    ++AI HG  +  +++ V++ F+ G 
Sbjct: 368 RDNKVLIFT-------GTKRVADDITRFLRQDGWPALAI-HGDKAQDERDWVLNEFRTGK 419

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +++AT V   GIDV   + +   +        +H++ GR GR     +    +    +
Sbjct: 420 SPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRI-GRTGRAGAKGTAYTYFTSDNA 478

Query: 602 KNSYTRLSVLKN 613
           K +   +S+L  
Sbjct: 479 KQARELVSILSE 490


>gi|330813838|ref|YP_004358077.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486933|gb|AEA81338.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 558

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/355 (18%), Positives = 131/355 (36%), Gaps = 35/355 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
           +PT  Q  +I  IL+      +   +     G+GKT    I M   +      +A+I+ P
Sbjct: 24  TPTPIQIKSIPIILE------QKDILASAQTGTGKTAAFCIPMIEMIATKKINRAIILVP 77

Query: 330 IGILAQQHYEFIKKY-TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA+Q  + I+K   Q + I    + G  P   + + L+     +  I++GT     D
Sbjct: 78  TRELAKQVNDVIEKLLFQQSVIKSVCLVGGEPMNKQLRRLKT----KPQIVVGTPGRVND 133

Query: 389 SIQYYKL-----ILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTAT--PIPRTLV 436
            ++   L      L+I+DE  R       +Q    +         L+ +AT  P    L 
Sbjct: 134 HLKRKSLLLNKVDLLILDEMDRMLDMGFSIQIDEIIKFLPKQKQTLMFSATIAPSIERLS 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              L + +   +    A    IK  +I + + D+    L   +     +  +  + +   
Sbjct: 194 KKYLNNAERVSVAAANATLITIKQEVINLRQEDK-YNTLVEQVKTKHGSTLVFVKTKHNA 252

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           +       +   +L +    S   +HG +    +  V+  F+     +L+AT +   G+D
Sbjct: 253 K-------KLAKNLEKEGFES-DSLHGNLRQNKRNQVIAKFRANKIHVLVATDIAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           +     ++  +        +H++ GR GR     +      P   +  +    +L
Sbjct: 305 IPHIEHVVNFDLPQQAEDFIHRM-GRTGRAGASGTAWSFVTPSDKRKWHEIEKIL 358


>gi|291537686|emb|CBL10798.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis M50/1]
          Length = 530

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 128/370 (34%), Gaps = 23/370 (6%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + F   T  Q  AI  ++        +  I Q   G+GKT    I +   V+     
Sbjct: 19  IAEMGFEEATPIQSQAIPVVMSG------VDVIGQAQTGTGKTASFGIPVLHKVDPNNKK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +I++P   LA Q  + I+K  +    + +  + G    + + KAL     G A III
Sbjct: 73  TQVIILSPTRELAIQVADEIRKLAKYMHGVKILPVYGGQEISRQIKAL----KGGAQIII 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT     D ++   +    V+        + L +  +     +L        +T++ ++ 
Sbjct: 129 GTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQTVLFSAT 188

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I  IT+K      +   ++        IE+    +    K   +   ++       
Sbjct: 189 MPKPILDITKKY-QHDAVTIKVVKKELTVPNIEQYYYDVKRKDKIEVLTRLLDYYNPKLS 247

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N + +V+      +        +HG M    ++ VM  F+ G  ++LIAT V   G
Sbjct: 248 LVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIATDVAARG 307

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV D   +   +        +H++ GR GR                      +   K  
Sbjct: 308 IDVDDVEAVFNYDIPQDDEYYVHRI-GRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCKTK 366

Query: 615 EDGFLIAEED 624
                I   D
Sbjct: 367 IVAMPIPSTD 376


>gi|207091782|ref|ZP_03239569.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 492

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 129/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++      A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
                I ++ +K     PIK  I P +  +  I +   V++E ++A  I   ++    KK
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSDITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ + + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDIGGVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|158300606|ref|XP_320481.4| AGAP012045-PA [Anopheles gambiae str. PEST]
 gi|157013241|gb|EAA00456.4| AGAP012045-PA [Anopheles gambiae str. PEST]
          Length = 910

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/453 (19%), Positives = 166/453 (36%), Gaps = 49/453 (10%)

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
           + L  K    ++ +       P   KDF    P+    A +E+   +  + +        
Sbjct: 163 QSLKAKYPGQNLMKPMWENLEP-FQKDFYVPHPSVMGRAAEEVQTFREQMQITVMGNNVP 221

Query: 251 IGIPINVEGKIAQKIL-----RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
                  EG   + ++     +  P  PT  Q       L        M+ I Q   GSG
Sbjct: 222 HPCQNFEEGNFPEYVMTEIKKQGFP-RPTAIQSQGWPIAL----SGRDMVGIAQ--TGSG 274

Query: 306 KTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEII 355
           KTL  ++     +          G   +++AP   LAQQ    ++ +  +++  I    +
Sbjct: 275 KTLAYMLPGLVHISHQKPLSRGEGPIVLVLAPTRELAQQIQTVVRDFGNHSKPNIRYTCV 334

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFG 407
            G   +  + + LER       ++I T     D ++           L+L   D     G
Sbjct: 335 FGGALKGPQVRDLER----GVEVVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMG 390

Query: 408 VQQRLKLT--QKATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            + +++    Q      VL+ +AT     +TL    L D     I             I+
Sbjct: 391 FEPQIRKIVEQIRPDRQVLMWSATWPKEVQTLAEDFLRDYIQINIGSLSLAANHNIHQIV 450

Query: 464 PI---NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520
            +   N  +  + +L   ++       I   +E KK+ +     +   ++      + +I
Sbjct: 451 DVCEENEKEGKLLKLLKEIATSDATNKIIIFVETKKKVD-----DLLKNIVRDGYGATSI 505

Query: 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
            HG  S  +++ V+  F++G   +L+AT V   G+DV D   +I  +  +     +H++ 
Sbjct: 506 -HGDKSQTERDYVLQDFRHGKSTILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRI- 563

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GR GR  +  +    + P   + +   LSVL+ 
Sbjct: 564 GRTGRCSQYGTAYTFFTPNNGRQARELLSVLEE 596


>gi|33861657|ref|NP_893218.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634234|emb|CAE19560.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 592

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 141/367 (38%), Gaps = 39/367 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIM 327
           +PT  Q++AI +++           + Q   G+GKT    + +   +E       + ++M
Sbjct: 72  TPTPIQKAAIPELMLGRD------LLGQAQTGTGKTAAFALPLIEKLENNKESNAKVLVM 125

Query: 328 APIGILAQQHYEFIKKY-TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P   LA Q  +  K Y  ++T +    I G     ++  +L+R    +  I++GT    
Sbjct: 126 TPTRELATQVADSFKSYSAESTNLRTLAIYGGTDFRNQISSLKR----KTDIVVGTPGRI 181

Query: 387 QDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            D I+           L+L   DE  + G  + ++        +          + ++ +
Sbjct: 182 MDHIRQGTFKINNISCLVLDEADEMLKMGFLEDIEWIIDKLPEN---------KQMVLFS 232

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    +I  I +K    +P + +I  + +  ++I +  + +    K   +   +E   E 
Sbjct: 233 ATMPNEIRNIAKKYLN-EPAEILIKSVKQETQLITQKYINVQRHHKLDALKRILEITNEG 291

Query: 499 NFRSVVERF-----NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               V  +          E+   S+A+++G +    +E+ +D  K G   +L+AT V   
Sbjct: 292 VIIFVRTKLLTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVAAR 351

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV    ++I  +         H++ GR GR       IL  +           +  +N
Sbjct: 352 GLDVERIKLVINYDFPFDKETYTHRI-GRTGRAGRSGEAILFVNQREKHFLRNLENSTRN 410

Query: 614 TEDGFLI 620
             +   I
Sbjct: 411 KIEEIEI 417


>gi|325089715|gb|EGC43025.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Ajellomyces
           capsulatus H88]
          Length = 1199

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 96/521 (18%), Positives = 180/521 (34%), Gaps = 76/521 (14%)

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           G+ K   ++  +  P  IF +  D++   I+                   EA   L    
Sbjct: 461 GRNKTNFSKSKLSKPEAIFGDEDDIDMKAIDP------------------EADDFLA--- 499

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL--AGQIALLLMR 244
             I     +KK  P +      ++     K+F         L  +E+     ++  + +R
Sbjct: 500 --ITSKGRKKKDLPPVNH--EKMNYEPFRKNFYTEPVDLAELTEEEVAALRLELDGIKVR 555

Query: 245 KQFKKEIGIPINVEGKIAQKI--LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGD 301
                +     +  G   Q +  +R + +  PT  Q  AI  I+           I    
Sbjct: 556 GVDVPKPVQKWSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDV------IGVAK 609

Query: 302 VGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
            GSGKT+  L+ M   +          G   +IM P   LA Q ++  K + +   +   
Sbjct: 610 TGSGKTIAFLLPMFRHIMDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALNLRAV 669

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHR 405
              G  P   +   L+R     A II+ T     D +           ++  V++DE  R
Sbjct: 670 CAYGGAPIKDQIAELKR----GAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADR 725

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                             +L    P  +T++ ++    ++  +  K    KP++ ++   
Sbjct: 726 MFDMGFEPQVM------RILGNVRPQRQTVLFSATFPRNMEALARKTLA-KPVEIIVGGK 778

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---------FRSVVERFNSLHEHFTS 516
           + +   I ++  V ++  K   +   + E    +         F    E  + L      
Sbjct: 779 SVVAPEITQIVEVRNQDTKFVRLLALLGELYADDKNEDARALIFVDRQEAADGLLRDLMH 838

Query: 517 S---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  IHG    +D++S +D FK G   +LIAT+V   G+DV    +++  +A +   
Sbjct: 839 KGYPCMSIHGGKDQVDRDSTIDDFKAGVFPILIATSVAARGLDVKQLKLVVNYDAPNHLE 898

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
             +H+  GR GR     + +        + S      LK +
Sbjct: 899 DYVHR-AGRTGRAGNTGTAVTFLTEDQERYSVDISKALKQS 938


>gi|296121514|ref|YP_003629292.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296013854|gb|ADG67093.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 608

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/357 (21%), Positives = 130/357 (36%), Gaps = 35/357 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           PT  Q   I  +++          +     G+GKT    I M  A++   +  Q +I+AP
Sbjct: 35  PTPIQARTIPLLIEGRDV------LGMAQTGTGKTAAFAIPMLQAIDLSSSATQVLILAP 88

Query: 330 IGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q  E  +KY  N   + V  I G      + + L R     AH+I+GT     D
Sbjct: 89  TRELAMQVAEAFEKYAANLKGLRVAAIYGGQDYQLQFRQLNR----GAHVIVGTPGRVMD 144

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP--RTLV 436
            I+           L+L   DE  R G  + ++    Q  +   + L +AT     R + 
Sbjct: 145 HIRRGSLKLDSLKGLVLDEADEMLRMGFAEDVEWILEQTPSQRQIALFSATMPDSIRRIA 204

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              L +     I  + A  + I+   I +    +     +++ +E   A  I  + +   
Sbjct: 205 QKHLKNPAEITIKRRTATAETIRQRFITVPPFQKEAVLARILETEPIDAVIIFVKTKSTT 264

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                                 A +   +    +E +++  K+G   ++IAT V   G+D
Sbjct: 265 VP--------LAEFLASQGYRTAALSSDVPQAQRERIVEHLKSGRLDIVIATDVAARGLD 316

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           V   + +I  +      + +H++ GR GR       IL  HP           V + 
Sbjct: 317 VQRITHVINFDLPSDSESYVHRI-GRTGRAGRQGDTILFLHPRERFQLRRIEQVTRQ 372


>gi|224284362|gb|ACN39916.1| unknown [Picea sitchensis]
          Length = 593

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/414 (17%), Positives = 144/414 (34%), Gaps = 46/414 (11%)

Query: 229 AYDELLAGQIALLLMRKQFKKE-IGIPINVEGKIAQKI-------LRNIPF-SPTKSQES 279
           A   L   +++    R++   E   +P  +               L    F  PT  Q  
Sbjct: 140 AVAALSDHEVSAYRKRREITVEGRDVPKPLRSFREASFTDHVLRELERAGFSEPTAIQAQ 199

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIG 331
                L+          I   + GSGKTL  L+     + A        G   +++AP  
Sbjct: 200 GWPMALKGRD------LIGIAETGSGKTLAYLLPAIVHINAQPHLAHGDGPIVLVLAPTR 253

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
            LA Q  +   K+  +++I    I G  P+  + + L+R       I+I T     D ++
Sbjct: 254 ELAVQIQQESVKFGTSSKIKSTCIYGGAPKGPQIRDLQR----GVEIVIATPGRLIDMLE 309

Query: 392 -----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
                  ++  +++DE  R          +K            P  +TL  ++    ++ 
Sbjct: 310 ARHTNLRRVTYLVLDEADRMLDMGFEPQIRKIITQIR------PDRQTLYWSATWPREVE 363

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SN 499
            +  +         +     + +  I ++  V+SE +K   +   +EE  +         
Sbjct: 364 NLARQFLHNPYKVIIGSADLKANHAISQIVEVVSEYEKYPRLIKLLEEIMDGSRILIFME 423

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   ++              IHG  S  +++ V+  FK G   ++ AT V   G+DV D
Sbjct: 424 TKKGCDQVTKQLRMDGWPALSIHGDKSQAERDWVLGEFKAGKSPIMTATDVAARGLDVKD 483

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
              +I  +        +H++ GR GR     +    +     + +   + +L+ 
Sbjct: 484 IKCVINYDFPGSLEDYVHRI-GRTGRAGAKGTAYSFFTAANGRFARELVGILQE 536


>gi|212637255|ref|YP_002313780.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212558739|gb|ACJ31193.1| Helicase:DbpA, RNA-binding:DEAD/DEAH box helicase [Shewanella
           piezotolerans WP3]
          Length = 611

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/418 (21%), Positives = 149/418 (35%), Gaps = 38/418 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT  Q ++I  ++           + Q   G+GKT    + +  +++     
Sbjct: 21  LDELGYEKPTPIQAASIDPLMAGKD------ILGQAQTGTGKTGAFALPLLNSIDPNTNS 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    Y +    + V  I G      +  AL R       II+
Sbjct: 75  PQILVLAPTRELAVQVAEAFGSYAKFMKGLHVLPIYGGQSMHQQLNALRR----GPQIIV 130

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT     D ++   L L  +        +    L          ++  TP  R L L S 
Sbjct: 131 GTPGRVMDHMRRGTLKLESLKAMVL--DEADEMLKMGFIDDIEWILEHTPKQRQLALFSA 188

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
              +  K        +P+   I       E IE+  V +S+  K   +   +E +K    
Sbjct: 189 TMPEQIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRVLEVEKTEGI 248

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                   S VE    L     +S + +HG M+   +E  +D  K G   ++IAT V   
Sbjct: 249 IIFVRTRNSCVELAEKLEARGYAS-SPLHGDMNQQARERAVDQLKRGKLDIIIATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV     ++  +  +   A +H++ GR GR       IL       +   T     K+
Sbjct: 308 GLDVERIGHVVNYDIPYDTEAYVHRI-GRTGRAGRTGMAILFVTHREMRMLRTIERATKS 366

Query: 614 TEDGFLIA------EEDLKQRKE--GEILGIKQSGMPKFLIAQ----PELHDSLLEIA 659
                 I       E  L +  E  GE++        K  +A+     E+   +L  A
Sbjct: 367 RISPMDIPSPETVTERRLSRLGEQIGEVIAKDSLDFMKGAVAKLCQELEVDTDVLAAA 424


>gi|91092124|ref|XP_972501.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68
           [Tribolium castaneum]
          Length = 540

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 140/373 (37%), Gaps = 44/373 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----- 319
           +R + F  PT  Q       L        M+ I     GSGKTL  ++     +      
Sbjct: 106 IRKMGFKHPTPIQSQGWPIAL----SGRDMVGI--ASTGSGKTLSYILPAIVHINHQPRL 159

Query: 320 ---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G  A+++AP   LAQQ  +    + ++++I    + G  P+  +   L        
Sbjct: 160 LRGDGPIALVLAPTRELAQQIQQVATDFGRSSKIRNTCVFGGAPKGPQANDLMD----GV 215

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLM 426
            I+I T     D ++  +        L+L   D     G   Q R  + Q       L+ 
Sbjct: 216 EIVIATPGRLIDFLESNRTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMW 275

Query: 427 TATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPINRIDEVIERLKVVLS 480
           +AT       L +    D  +I     +  A      I  V     +  ++   LK +++
Sbjct: 276 SATWPKEVQALAAEFLKDYIQINVGSLQLSANHNILQIIDVCQEYEKETKLSTLLKEIMA 335

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           E +    I   IE KK  +     E    +      ++ I HG  S  +++ V+  F+ G
Sbjct: 336 EKENKTIIF--IETKKRVD-----EITRKMKRDGWPAVCI-HGDKSQQERDWVLQDFRTG 387

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+DV D   +I  +        +H++ GR GR +   +    + P  
Sbjct: 388 KAPILVATDVAARGLDVEDVKFVINFDYPSNSEDYVHRI-GRTGRSQRTGTAYTFFTPAN 446

Query: 601 SKNSYTRLSVLKN 613
           +  +   +SVLK 
Sbjct: 447 ANKAADLVSVLKE 459


>gi|665989|dbj|BAA11693.1| deaD [Bacillus subtilis]
          Length = 479

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 143/371 (38%), Gaps = 40/371 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           L  + +  PTK Q+S I   L+      R   +++   GSGKT    I +       E  
Sbjct: 17  LEGLGYTEPTKVQQSVIPAALE------RKDLVVKSQTGSGKTASFGIPLCELANWDENK 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E I    +  +I    + G      ++  L++    ++HI++G
Sbjct: 71  PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQ----KSHIVVG 126

Query: 382 THALFQDSIQYYKLILV--------IVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L L           DE    G  +Q   + +        ++ +  +P
Sbjct: 127 TPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTMLFSATLP 186

Query: 433 RT---LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           +    L    + + +  ++       + I+  +I +   ++      V+++E   +  I 
Sbjct: 187 QDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIF 246

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E         V +     +        IHG M   D+  VM+ FK G  + L+AT 
Sbjct: 247 CRTKE--------HVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD 298

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + S++I  +      + +H+  GR GR       I       +      L+
Sbjct: 299 VAARGIDIENISLVINYDLPLEKESYVHR-TGRTGRAGNKGKAISFV----TAFEKRFLA 353

Query: 610 VLKNTEDGFLI 620
            ++    GF I
Sbjct: 354 DIEEYI-GFEI 363


>gi|320037247|gb|EFW19185.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coccidioides
           posadasii str. Silveira]
          Length = 853

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 153/426 (35%), Gaps = 55/426 (12%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ++R + +  PT  Q  AI  I+           I     GSGKT+  L+ M   ++    
Sbjct: 229 VIRKLGYEQPTSIQSQAIPAIMSGRDV------IGVAKTGSGKTIAFLLPMFRHIKDQRP 282

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +IM P   LA Q ++  K + +   +      G  P   +   L+R     
Sbjct: 283 LENMEGPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKR----G 338

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K      ++  
Sbjct: 339 AEIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMK------IISN 392

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K    KP++ ++   + + + I ++  V  E  K   
Sbjct: 393 IRPSRQTVLFSATFPRNMEALARKTLT-KPVEIIVGGRSVVAQEITQIVEVRPENTKFVR 451

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  + L             IHG    +D++S +D
Sbjct: 452 LLELLGNLYSDDNNEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTID 511

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    ++I  +A +     +H+  GR GR     + +  
Sbjct: 512 DFKAGIFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 570

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIA---EED--LKQRKEGEILGIKQSGM--PKFLIAQ 648
                 + S      LK +      A     D  L++ K G+      SG          
Sbjct: 571 LTEEQERYSVDIAKALKQSGQSVPEAVQKMVDSFLEKVKSGK-EKASASGFGGKGLERLD 629

Query: 649 PELHDS 654
            E   +
Sbjct: 630 QERDAA 635


>gi|18310378|ref|NP_562312.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens str. 13]
 gi|110801126|ref|YP_696091.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens ATCC
           13124]
 gi|110803627|ref|YP_698708.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens SM101]
 gi|18145058|dbj|BAB81102.1| ATP-dependent RNA helicase [Clostridium perfringens str. 13]
 gi|110675773|gb|ABG84760.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens ATCC 13124]
 gi|110684128|gb|ABG87498.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens SM101]
          Length = 528

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 122/347 (35%), Gaps = 39/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----AGGQAVI 326
            P++ Q  +I   L+          I Q   G+GKT     A+    +        +A+I
Sbjct: 26  EPSQIQAESIPVALEGHD------IIGQAQTGTGKTAAFGCAIINNADFSGKKKSPKALI 79

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +AP   LA Q  E + +  ++ ++ V  I G  P   + +AL         I++GT    
Sbjct: 80  LAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQPIDRQIRAL----KNGVDIVVGTPGRV 135

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            D I+   L        +L   DE    G    L           ++ +     +TL+ +
Sbjct: 136 LDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDL---------EEIVKSLKTDRQTLLFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +     I K+             I   +     IE+    +    +   +C  ++  +  
Sbjct: 187 ATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVLDFDEPN 246

Query: 498 -----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  V+      +     +  +HG MS   +   +  FK G+   L+AT V  
Sbjct: 247 AAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            GIDV   + +I  +      + +H++ GR GR         L  P 
Sbjct: 307 RGIDVESVTHVINYDLPQDNESYVHRI-GRTGRANREGVAYSLVTPK 352


>gi|254225215|ref|ZP_04918828.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
 gi|125622314|gb|EAZ50635.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
          Length = 464

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 128/344 (37%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A I++ T  
Sbjct: 77  LILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ---RMCKG-ADILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRK-------ILKLLPEKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                  +   K     P++  + P N     +E+        KK   +   ++E     
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|254369546|ref|ZP_04985557.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122500|gb|EDO66635.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 569

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 151/382 (39%), Gaps = 45/382 (11%)

Query: 269 IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM-----AAAVEAGG 322
           + +  PT  Q+ AI  IL           + Q   G+GKT    + +      A+ +   
Sbjct: 25  LGYENPTPIQQYAIPYILSGRDV------LGQAQTGTGKTAAFALPLINNMDLASRDRAP 78

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E  + + +N   + V  I G      + +AL++       +++G
Sbjct: 79  QVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQ----GVKVVVG 134

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I+           L+L   DE  R G    +K      +            +
Sbjct: 135 TTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQC---------Q 185

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ I E+   R P K  +    +    + +  +V+   +K   +   +E
Sbjct: 186 RLLFSATIPTDIADIIEEYL-RNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLE 244

Query: 494 EKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            ++            S +E  ++L       +A I+G M    +E ++D F++    +L+
Sbjct: 245 TEETDGVIIFVKTKTSTIEVADNLK-ALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V+  GID+   S +I  +  +     +H++ GR GR     + I L      +   T
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRI-GRTGRAGREGTSISLVPLKEMRFLRT 362

Query: 607 RLSVLKN-TEDGFLIAEEDLKQ 627
                 +  ++ F+ + +DL Q
Sbjct: 363 LERFTGSPMQEVFMPSAKDLAQ 384


>gi|320580546|gb|EFW94768.1| ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 529

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 139/365 (38%), Gaps = 43/365 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q       L        M+ I     GSGKTL   +     + A        G   
Sbjct: 119 PTAIQCQGWPMAL----SGRDMVGI--ASTGSGKTLSYCLPAIVHINAQPLLQPGDGPIC 172

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  +   K+ ++++I    + G +P+  + + L R     A I I T  
Sbjct: 173 LVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPKGQQIRDLAR----GAEICIATPG 228

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP-- 432
              D +   +        L+L   D     G + +++    Q       L+ +AT     
Sbjct: 229 RLLDMLDSGRTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKSV 288

Query: 433 RTLVLTSLGDIDISKITEKP----AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           +TL    L D     I           K I  V     + D++ + L+  + + +    +
Sbjct: 289 QTLARDYLNDYIQVNIGSLDLAASHNIKQIIDVCSEYEKRDKLAKHLETAMQDPQAKVIV 348

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    S  R+  E    +      ++AI HG     +++ V+  F++G   +++AT
Sbjct: 349 F-------ASTKRTCDEITAYMRSEGWPALAI-HGDKEQRERDWVLSEFRSGRSPIMVAT 400

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV   + +I  +        +H++ GR GR  E  + I ++    S  ++  +
Sbjct: 401 DVAARGIDVKGVTTVINHDMPGNVEDYVHRI-GRTGRAGEKGTAITMFTDGNSGQAHDLI 459

Query: 609 SVLKN 613
           ++L+ 
Sbjct: 460 TILRE 464


>gi|74181660|dbj|BAE32549.1| unnamed protein product [Mus musculus]
          Length = 658

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + +   G          
Sbjct: 202 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAMKE 255

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 256 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLER- 314

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 315 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 371

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  +D+    
Sbjct: 372 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDK-RSF 429

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +   +       +   IHG  S  D+E  +
Sbjct: 430 LLDLLNATGKDSLTLVFVETKK------GADSLENFLFQERYACTSIHGDRSQKDREEAL 483

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 484 HQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 542

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 543 FFNERNLNITKDLLDLLVE 561


>gi|25141235|ref|NP_036138.1| ATP-dependent RNA helicase DDX3Y [Mus musculus]
 gi|73620958|sp|Q62095|DDX3Y_MOUSE RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName:
           Full=D1Pas1-related sequence 1; AltName: Full=DEAD box
           protein 3, Y-chromosomal; AltName: Full=DEAD-box RNA
           helicase DEAD2; Short=mDEAD2
 gi|3790186|emb|CAA07483.1| DBY protein [Mus musculus]
 gi|18204785|gb|AAH21453.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Mus musculus]
 gi|148706201|gb|EDL38148.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_b
           [Mus musculus]
          Length = 658

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + +   G          
Sbjct: 202 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAMKE 255

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 256 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLER- 314

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 315 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 371

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  +D+    
Sbjct: 372 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDK-RSF 429

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +   +       +   IHG  S  D+E  +
Sbjct: 430 LLDLLNATGKDSLTLVFVETKK------GADSLENFLFQERYACTSIHGDRSQKDREEAL 483

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 484 HQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 542

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 543 FFNERNLNITKDLLDLLVE 561


>gi|323497187|ref|ZP_08102207.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323317762|gb|EGA70753.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 419

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/368 (19%), Positives = 140/368 (38%), Gaps = 34/368 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------ 318
           L  + F+ PT+ Q+ +I  IL           +     G+GKT    + +   +      
Sbjct: 18  LNTLGFTTPTQVQQQSIPHILLGKDV------LAGAQTGTGKTAAFGLPIIQQLIQSESV 71

Query: 319 ----EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                   +A+++ P   LAQQ Y+ + +Y ++T + +    G      + + L +    
Sbjct: 72  RDPQGNDVRALVLVPTRELAQQVYDNLVQYAESTPLKIVTAYGGTSINVQTRNLHQ---- 127

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I+I T     D +    + L    E        R+           +L    P  +T
Sbjct: 128 GCDILIVTPGRLIDHMFCKNVSLAK-TEYLVLDEADRMLDMGFMPDIQRILKRFNPERQT 186

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L  ++  D  I  I  K   + PI+  + P N   E ++++   + + +KA  +   I  
Sbjct: 187 LFFSATFDKRIKNIAYK-LQKDPIEIQVSPSNSTAETVKQMVYPVDKKRKAELLAYLIGS 245

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +           +   +      +      A I+G  S   ++  +D FK+G  + LIAT
Sbjct: 246 RNWQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIAT 305

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+     ++  +  +     +H++ GR GR  +    + L    +S++ +  L
Sbjct: 306 DVAARGLDINQLEQVVNFDMPYKAEDYVHRI-GRTGRAGKEGFAVSL----MSQDEHYLL 360

Query: 609 SVLKNTED 616
             ++   D
Sbjct: 361 EAIERLLD 368


>gi|238917309|ref|YP_002930826.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
 gi|238872669|gb|ACR72379.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
          Length = 571

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/349 (21%), Positives = 129/349 (36%), Gaps = 42/349 (12%)

Query: 267 RNIPFSPT-KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---G 322
            ++ F  T   Q  AI  +L+ +        I Q   G+GKT    I M   +       
Sbjct: 17  EDMGFEETSPIQTQAIPAVLEGIDV------IGQAQTGTGKTAAYSIPMLQKINPDVKKP 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+++ P   LA Q  E I+K  +    I V  + G      + K+L+        II+G
Sbjct: 71  QAIVLCPTRELAVQVAEEIRKLAKYMSDIKVLPVYGGQEIVRQIKSLKA----GVQIIVG 126

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D ++   +        IL   DE    G ++ ++     T             +
Sbjct: 127 TPGRVMDHMRRKTVKFDSVSMVILDEADEMLDMGFREDMETILTETPEE---------RQ 177

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++     I +I  K      I  V+     +   I++    +    K   +   I+
Sbjct: 178 TVLFSATMPKPIMEIARKFQKDARIIKVVRKELTVSN-IDQFYYEVRPKNKTEILSRLID 236

Query: 494 EK-------KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                      +  R V E  + L      +  I HG M    ++ VMD F++G  ++LI
Sbjct: 237 IYNPKLSVVFCNTKRQVDELISELKGRGYFADGI-HGDMKQQQRDRVMDDFRSGKTEILI 295

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           AT V   GIDV    I+   +        +H++ GR GR  +    +  
Sbjct: 296 ATDVAARGIDVDGVDIVFNYDLPQDEEYYVHRI-GRTGRAGKSGLALSF 343


>gi|221311883|ref|ZP_03593730.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221316207|ref|ZP_03598012.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221321119|ref|ZP_03602413.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221325403|ref|ZP_03606697.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|255767828|ref|NP_391790.2| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|254763269|sp|P42305|DBPA_BACSU RecName: Full=ATP-dependent RNA helicase dbpA
 gi|225185456|emb|CAB15947.2| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 479

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 143/371 (38%), Gaps = 40/371 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           L  + +  PTK Q+S I   L+      R   +++   GSGKT    I +       E  
Sbjct: 17  LEGLGYTEPTKVQQSVIPAALE------RKDLVVKSQTGSGKTASFGIPLCELANWDENK 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E I    +  +I    + G      ++  L++    ++HI++G
Sbjct: 71  PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQ----KSHIVVG 126

Query: 382 THALFQDSIQYYKLILV--------IVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L L           DE    G  +Q   + +        ++ +  +P
Sbjct: 127 TPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTMLFSATLP 186

Query: 433 RT---LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           +    L    + + +  ++       + I+  +I +   ++      V+++E   +  I 
Sbjct: 187 QDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIF 246

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E         V +     +        IHG M   D+  VM+ FK G  + L+AT 
Sbjct: 247 CRTKE--------HVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD 298

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + S++I  +      + +H+  GR GR       I       +      L+
Sbjct: 299 VAARGIDIENISLVINYDLPLEKESYVHR-TGRTGRAGNKGKAISFV----TAFEKRFLA 353

Query: 610 VLKNTEDGFLI 620
            ++    GF I
Sbjct: 354 DIEEYI-GFEI 363


>gi|169781778|ref|XP_001825352.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Aspergillus
           oryzae RIB40]
 gi|91207409|sp|Q2U2J6|PRP5_ASPOR RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|83774094|dbj|BAE64219.1| unnamed protein product [Aspergillus oryzae]
          Length = 1186

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 143/379 (37%), Gaps = 47/379 (12%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ++  + +S PT  Q  AI  I+           I     GSGKT+  LI M   ++    
Sbjct: 568 VIDRLGYSAPTSIQAQAIPAIMSGRDV------IGVAKTGSGKTIAFLIPMFRHIKDQRP 621

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +IM P   LA Q ++  K + +   +      G  P   +   L+R     
Sbjct: 622 LENMEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKR----G 677

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K      +L  
Sbjct: 678 AEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMK------ILAN 731

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K    KP++ V+   + +   I ++  V SE KK   
Sbjct: 732 VRPDKQTVLFSATFPRNMEALARKTLN-KPVEIVVGGRSVVAPEITQIVEVRSEDKKFIR 790

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  ++L             IHG    ID++S ++
Sbjct: 791 LLELLGNLYSTDENEDARALIFVERQEGADTLLRELMRKGYPCMSIHGGKDQIDRDSTIE 850

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    +++  +A +     +H+  GR GR     + +  
Sbjct: 851 DFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 909

Query: 596 YHPPLSKNSYTRLSVLKNT 614
                 + S      LK +
Sbjct: 910 LTEDQERYSVDIAKALKQS 928


>gi|291616471|ref|YP_003519213.1| DbpA [Pantoea ananatis LMG 20103]
 gi|291151501|gb|ADD76085.1| DbpA [Pantoea ananatis LMG 20103]
          Length = 459

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/453 (19%), Positives = 169/453 (37%), Gaps = 60/453 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           S T  Q + +  IL     +       Q   GSGKT    I +   +++     QA+I+ 
Sbjct: 25  SMTPVQAATLPAILDGRDVR------AQAKTGSGKTAAFGIGLLQHIDSAHFQTQALILC 78

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +++  + T+ I +  + G  P + +R +L        HI++GT     
Sbjct: 79  PTRELADQVSNVLRQLARFTRNIKILTLCGGQPMSAQRDSLVHA----PHIVVGTPGRIL 134

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVL 437
           D I+           L+L   D     G +  +   +     +   LL +AT       L
Sbjct: 135 DHIKRETLKLESLRTLVLDEADRMLEMGFRDDMETIIAATPASRQTLLFSATWPEGIAAL 194

Query: 438 TSLGDID-ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +     + +S +TE+ +    I+   I  +  +++   + ++      +  +        
Sbjct: 195 SQRFQREALSVVTEEVSELPAIEQQFIEASHGEKLSLLISLLSERQPSSCVVF------- 247

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +   +   +       S   +HG +   D+E V+  F NG+ ++L+AT V   G+D
Sbjct: 248 -CNTKRECDDIAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVATDVAARGLD 306

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS------- 609
           +   S+++           LH++ GR  R  E  + +          ++           
Sbjct: 307 IKLLSLVVNYQLAWDPEVHLHRI-GRTARAGEQGAAVSFVAADEMARAHALEDFLQQKLP 365

Query: 610 -----VLKNTEDGFLIAEEDL--------KQRKEGEILG--IKQSGMPKFLIAQPELHD- 653
                 LK +      A   L        K R  G+ILG    ++G     I + +L   
Sbjct: 366 WVAASSLKKSSKALPAAMMTLCIDGGRKAKIR-PGDILGALTGEAGYRADQIGKIDLTAT 424

Query: 654 -SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            + + I    AKH L +      ++G++ R +L
Sbjct: 425 HAYVAIEAAQAKHALVKLKQ-GKIKGKTCRAVL 456


>gi|227538144|ref|ZP_03968193.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241987|gb|EEI92002.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 435

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 133/346 (38%), Gaps = 37/346 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QA 324
           PT  QE AI  I Q      R   +     G+GKT    I +   +            + 
Sbjct: 41  PTPIQEQAIPIIFQ------RKDLLACAQTGTGKTAAFAIPILQMLTYSKEKTAQKRIRT 94

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E    Y++   I   +I G + Q  +R AL +       I+I T  
Sbjct: 95  LVLTPTRELAIQIKENFDAYSKELPIRNLVIYGGVGQQPQRDALRK----GIDILIATPG 150

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I   +L   ++DE  R      +   +K      ++       +TL+ ++
Sbjct: 151 RLLDLYNQGFIDLKQLEYFVLDEADRMLDMGFIHDVKK------VISIIPKKRQTLLFSA 204

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I K+       +P K  + P +   E I++    +S+  K + +   ++ +   +
Sbjct: 205 TMPAEIQKLAS-HILEEPSKVEVTPESTTAEKIQQSVYFVSKSDKRHLLTHLLKSENIEH 263

Query: 500 F------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   +R            A IHG  S   +++ + +FK+   ++L+AT +   
Sbjct: 264 TLVFSRTKHGADRIAKDLAKQGIQAAAIHGNKSQSARQNALSNFKDRKLRVLVATDIAAR 323

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GID+ D S +I  +  +   + +H++ GR GR  +    I      
Sbjct: 324 GIDIDDLSYVINFDLPNIPESYVHRI-GRTGRAGKDGKAISFCDDE 368


>gi|187779372|ref|ZP_02995845.1| hypothetical protein CLOSPO_02968 [Clostridium sporogenes ATCC
           15579]
 gi|187772997|gb|EDU36799.1| hypothetical protein CLOSPO_02968 [Clostridium sporogenes ATCC
           15579]
          Length = 374

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/356 (21%), Positives = 125/356 (35%), Gaps = 34/356 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE +I      M  KN    I +   G+GKTL  L+ M   +       Q +I+ 
Sbjct: 24  EPTPIQEESI------MLIKNGNDVIAEAQTGTGKTLAFLLPMFENISPDINAIQGLIIT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  +   + +    G      + K L        H++I T     D
Sbjct: 78  PTRELAIQITEEAMKLKKAKDLNILAAYGGKDIGSQIKKL----KNNIHLVIATPGRLLD 133

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPRT--LV 436
            +            L+L   DE    G +   R  +         L  +AT       L 
Sbjct: 134 HLNRNTLNFKDLKTLVLDEADEMLLMGFKNEVRSIIDNTPRKRQTLCFSATMNSEVKKLA 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
             ++ D  +  I ++    K IK V+I      +  +  K++  E      I  +     
Sbjct: 194 YKNMRDPKLVIIEKEEVTLKNIKQVLIETTDRRKQEDLCKILDEENPFMAIIFCRT---- 249

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+           +   +HG ++   +E +M SFKN   + LIAT V   G+D
Sbjct: 250 ----KRRVDNLEEDLYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +   + +   +      + +H++ GR GR  E     L   P       T    +K
Sbjct: 306 ITGVTHVFNYDIPENAESYIHRI-GRTGRAGEKGYTFLFVAPKDEATLDTIEKEIK 360


>gi|50305787|ref|XP_452854.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660562|sp|Q6CT85|RRP3_KLULA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|49641987|emb|CAH01705.1| KLLA0C14608p [Kluyveromyces lactis]
          Length = 487

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/341 (21%), Positives = 129/341 (37%), Gaps = 32/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMA 328
            PT  Q  AI   L+          I     GSGKT    I +   +    Q   A I+A
Sbjct: 89  KPTPIQSKAIPPALKG------SDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILA 142

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  E          +    I G M    + + L R    + HIII T     D
Sbjct: 143 PTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMR----KPHIIIATPGRLMD 198

Query: 389 SIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            ++        KL  +++DE  R      L +        +L +  T    T + ++   
Sbjct: 199 HLENTKGFNLRKLKYLVMDEADRL-----LDMEFGPVLDRILNIIPTQGRTTYLFSATMT 253

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE------KK 496
             I K+ ++ +   P+K  +    +  + + +  +V+  G K  ++   + E        
Sbjct: 254 SKIDKL-QRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIV 312

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +  ++  ER ++L      S   +HG ++   +   +D FK G   +L+AT V   G+D
Sbjct: 313 FTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLD 372

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +    I+I  +      + +H++ GR  R       I L  
Sbjct: 373 IPSVDIVINYDIPVDSKSYIHRV-GRTARAGRSGKSISLVS 412


>gi|83310484|ref|YP_420748.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82945325|dbj|BAE50189.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 583

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/361 (20%), Positives = 133/361 (36%), Gaps = 39/361 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI  +L           +     G+GKT    + M   + AG       +++I
Sbjct: 61  PTPIQAQAIPVVLMGRDV------LGCAQTGTGKTASFTLPMIEILAAGRAKARMPRSLI 114

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +AP   LA Q  E   KY +   +   +I G    + +   L+R       ++I T    
Sbjct: 115 LAPTRELAAQVAENFDKYGKYHPLKKALIIGGESMSDQVALLDR----GVDVLIATPGRL 170

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIPRT 434
            D  +  +++L  V     DE  R      +   +K           L  +AT  P  R 
Sbjct: 171 LDMFERGRILLNDVKVLVIDEADRMLDMGFIPDVEKIVGLLPKIRQTLFFSATMGPEIRR 230

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIE 493
           L    L +    K++   +    +   +  +  ID+      ++ + E K A+  C +  
Sbjct: 231 LADAFLMNPKEVKVSTGASAATTVVQALAVVEEIDKRETLRHLIRIEEVKNAFIFCNR-- 288

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R V   F SL +H    +  +HG M+   +   ++ FK G  +L++ + V   
Sbjct: 289 ------KRDVDVLFRSLKKHGFD-VVQLHGDMAQSARGETLEKFKKGEARLMVCSDVAAR 341

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+   S +   +        +H++ GR GR         +  P   +      +++  
Sbjct: 342 GIDISAVSHVFNFDVPIHAEDYVHRI-GRTGRAGMEGHAFTIASPDDGRFVGAIEAMIGT 400

Query: 614 T 614
           T
Sbjct: 401 T 401


>gi|268563240|ref|XP_002638790.1| Hypothetical protein CBG05145 [Caenorhabditis briggsae]
 gi|187035232|emb|CAP25672.1| hypothetical protein CBG_05145 [Caenorhabditis briggsae AF16]
          Length = 400

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 132/341 (38%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ AI  IL+          I Q   G+GKT    I++  +++      QA+I++
Sbjct: 49  KPSAIQQRAIPAILK------ARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILS 102

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 103 PTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQ----HVVSGTPGRVFD 158

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G +++L    +       V+L++AT     L +T
Sbjct: 159 MIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMT 218

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + +++ +   + L  +       Y      +   
Sbjct: 219 SKFMTDPIRILVKRDELTLEGIKQFFVAVDKEEWKFDTLIDL-------YDTLTITQAVL 271

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+      +    +++ +HG M   D++ VM  F+ G  ++LI+T V   G+D
Sbjct: 272 FCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGNTRVLISTDVWARGLD 331

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   S++I  +  +     +H++ GR GR       I    
Sbjct: 332 VPQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVK 371


>gi|163940245|ref|YP_001645129.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|163862442|gb|ABY43501.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 450

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 132/348 (37%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PDSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYME-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L++       + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDDLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|114048765|ref|YP_739315.1| ATP-dependent RNA helicase DbpA [Shewanella sp. MR-7]
 gi|113890207|gb|ABI44258.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 479

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/432 (16%), Positives = 151/432 (34%), Gaps = 47/432 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
             T  Q  ++  IL           I QG  GSGKT    + +   ++      Q +++ 
Sbjct: 44  EMTPIQAQSLPAILAGEDV------IGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLC 97

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+   +    + V  + G +P   +  +LE      AHII+GT     
Sbjct: 98  PTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEH----GAHIIVGTPGRIV 153

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++  +L L  +          R+           ++  +    +TL+ ++     I  
Sbjct: 154 DHLERNRLDLSNL-NMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATFPEQIQS 212

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFR 501
           I  K     P+   +   +    + +    +  +  +   +   + ++K        N +
Sbjct: 213 IA-KQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKPESAVVFCNTK 271

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              ++          S+  +HG +   D++  +  F N +  +L+AT V   G+D+    
Sbjct: 272 RETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALD 331

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            +   +        +H++ GR GR     +    +              L+       + 
Sbjct: 332 AVFNYHVAFDTEVHIHRI-GRTGRAGSKGAAFTFFDDQDGYKIALLEEYLERDIQSEALP 390

Query: 622 EEDL--------------------KQRKEGEILG--IKQSGMPKFLIAQPEL--HDSLLE 657
              L                    ++ + G+ILG    ++G+    + +  +  + + + 
Sbjct: 391 SLSLLGTAPNAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKILVTDYRAYVA 450

Query: 658 IARKDAKHILTQ 669
           + RK AK  L++
Sbjct: 451 VNRKVAKKALSK 462


>gi|330897234|gb|EGH28653.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 557

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 146/393 (37%), Gaps = 46/393 (11%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
                +   I   ++      P+  Q+ +I  I+           I Q   G+GKT    
Sbjct: 8   FAAFELHPNILAAVIATGYEEPSAIQQQSIPIIMAGHD------MIGQAQTGTGKTAAFA 61

Query: 312 IAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKA 367
           + +   ++      QA+I+AP   LA Q     + Y  Q   + V  + G  P   + KA
Sbjct: 62  LPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKA 121

Query: 368 LERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKAT 419
           +       A I++ T     D ++           L+L   DE  + G    L+      
Sbjct: 122 IRN----GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLE------ 171

Query: 420 APHVLLMTATP-IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               ++  A P   +T++ ++     I  I E+   R P    I    +    IE+  ++
Sbjct: 172 ----VIFKAMPETKQTVLFSATLPQSIRAIAERHL-RDPKHVKIQTKTQTVTAIEQAHLL 226

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKES 532
           +   +K   +   +E +        V          S  E      A ++G ++   +E 
Sbjct: 227 VHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRER 286

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           V++S K+G   +++AT V   G+DV   + +   +  +   + +H++ GR GR       
Sbjct: 287 VIESLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGREGRA 345

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           +LL  P         L V++    G  +AE  L
Sbjct: 346 LLLVTPRE----RRMLQVIERVT-GQKVAEVRL 373


>gi|223590235|sp|A5DL80|DBP2_PICGU RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 554

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 136/373 (36%), Gaps = 44/373 (11%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------ 320
           +  P  PT  Q       L        M+ I     GSGKTL   +     + A      
Sbjct: 143 QGFP-KPTAIQCQGWPMAL----SGRDMIGI--AATGSGKTLSYCLPSIVHINAQPLLGP 195

Query: 321 --GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G   +++AP   LA Q  +   K+  +++I    I G  P+  + + L R       I
Sbjct: 196 GDGPIVLVLAPTRELAVQIQQECSKFGASSRIRNTCIYGGAPKGQQIRDLAR----GVEI 251

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTA 428
            I T     D ++  K        L+L   D     G + +++    Q       L+ +A
Sbjct: 252 CIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 311

Query: 429 TPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEG 482
           T     +TL    L D     I           T I+ +     + D +++ L+   ++ 
Sbjct: 312 TWPKEVQTLTRDYLNDPIQVTIGSLELAASHTITQIVEVLSEFEKRDRLVKHLETATADK 371

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +    I         S  R+  E  + L      ++AI HG     +++ V+  FK G  
Sbjct: 372 EAKVLIF-------SSTKRACDEITSYLRADGWPALAI-HGDKQQNERDWVLREFKTGKS 423

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +++AT V   GIDV   S +I  +        +H++ GR GR     + + L+    SK
Sbjct: 424 PIMVATDVAARGIDVKGISYVINYDMPGNIEDYVHRI-GRTGRAGTTGTAVSLFTEANSK 482

Query: 603 NSYTRLSVLKNTE 615
                  +++   
Sbjct: 483 LGGDLCKIMREAN 495


>gi|238493219|ref|XP_002377846.1| RNA helicase (Dbp), putative [Aspergillus flavus NRRL3357]
 gi|317157028|ref|XP_001826178.2| ATP-dependent RNA helicase dbp2 [Aspergillus oryzae RIB40]
 gi|220696340|gb|EED52682.1| RNA helicase (Dbp), putative [Aspergillus flavus NRRL3357]
          Length = 556

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 134/365 (36%), Gaps = 43/365 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q       L           +   + GSGKTL   +     + A        G   
Sbjct: 155 PTAIQSQGWPMALSGRDV------VGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIV 208

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T  
Sbjct: 209 LVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDLSR----GVEVCIATPG 264

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP-- 432
              D ++  +        L+L   D     G   Q R  ++Q        + +AT     
Sbjct: 265 RLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEV 324

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLKVVLSEGKKAYWI 488
           R L    L D     I           T    V+    + D++I+ L+ ++        I
Sbjct: 325 RQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMENRGNKCLI 384

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       R   E    L +    +++I HG     +++ V++ FK G   +++AT
Sbjct: 385 FT-------GTKRIADEITRFLRQDGWPALSI-HGDKQQQERDWVLNEFKTGKSPIMVAT 436

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV D + ++  +  +     +H++ GR GR     + I  +    SK +   +
Sbjct: 437 DVASRGIDVRDITHVLNYDYPNNSEDYVHRI-GRTGRAGAKGTAITFFTTDNSKQARDLV 495

Query: 609 SVLKN 613
           ++L  
Sbjct: 496 TILTE 500


>gi|53716164|ref|YP_106468.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei ATCC 23344]
 gi|67639524|ref|ZP_00438373.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|254203477|ref|ZP_04909838.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei FMH]
 gi|254205355|ref|ZP_04911708.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei JHU]
 gi|52422134|gb|AAU45704.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei ATCC 23344]
 gi|147745716|gb|EDK52795.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei FMH]
 gi|147754941|gb|EDK62005.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei JHU]
 gi|238520075|gb|EEP83538.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei GB8 horse 4]
          Length = 465

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 168/461 (36%), Gaps = 62/461 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 23  LAQLGYTDMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARRFD 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    + V  + G  P   + ++LE      AHII+
Sbjct: 77  VQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIIV 132

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 133 GTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQ------CPPTRQTL 186

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   +   
Sbjct: 187 LFSATYPDGIAKLSQQFLRHP--KRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHY 244

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 245 RPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 305 VAARGLDIAQLEAVINVDVTPDPEVYVHRI-GRTGRADQDGWALSLASMNEMGRVGGIEQ 363

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILGIKQSGMPKFLIAQP 649
            L        +A              E L+           G++LG   +G   F  AQ 
Sbjct: 364 ALAREVKWHPLAELKAGGDAPLLPPMETLQILGGRKDKIRPGDVLGAL-TGDAGFSGAQI 422

Query: 650 -----ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                    + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 423 GKINVTEFSTYVAVERGIARDALRKL-NAGKIKGKRVKVRL 462


>gi|153829646|ref|ZP_01982313.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
 gi|148874874|gb|EDL73009.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
          Length = 464

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 128/344 (37%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A I++ T  
Sbjct: 77  LILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ---RMCKG-ADILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRK-------ILKLLPEKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                  +   K     P++  + P N     +E+        KK   +   ++E     
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|114797080|ref|YP_759424.1| putative ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC
           15444]
 gi|114737254|gb|ABI75379.1| putative ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC
           15444]
          Length = 536

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 132/369 (35%), Gaps = 42/369 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI  IL        +  + Q   G+GKT   ++ M   +  G       + +I
Sbjct: 27  PTPIQREAIPHIL----MGGDVTGVAQ--TGTGKTAAFVLPMIQRLSTGRARARMPRCLI 80

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  +KY +  ++ + ++ G +    +   L+R       ++I T    
Sbjct: 81  LCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQR----GVDVLIATPGRL 136

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIPRT 434
            D     KL+++ V     DE  R      +   +K           LL +AT     + 
Sbjct: 137 MDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQTLLFSATFPTDIQR 196

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIP----INRIDEVIERLKVVLSEGKKAYWICP 490
           L  T   D    ++T      + I   ++       +      R  +  +  K     C 
Sbjct: 197 LAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKARRTALRRVIEATNVKNGIVFCN 256

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +  E              SL +H   + A IHG +    +   +  F++G  KLL+A+ V
Sbjct: 257 RKVEVDI--------VAASLTKHGHDA-APIHGDLPQSVRSETLQRFRDGKLKLLVASDV 307

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D   +            +H++ GR GR         +  P   K+    + +
Sbjct: 308 AARGLDIPDVGHVFNFGPPPKDEDYVHRI-GRTGRAGRTGESYTVVTPADDKSWGFVVKM 366

Query: 611 LKNTEDGFL 619
           +K     F+
Sbjct: 367 IKKDVPEFM 375


>gi|323492253|ref|ZP_08097411.1| putative ATP-dependent RNA helicase RhlE [Vibrio brasiliensis LMG
           20546]
 gi|323313566|gb|EGA66672.1| putative ATP-dependent RNA helicase RhlE [Vibrio brasiliensis LMG
           20546]
          Length = 427

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/385 (17%), Positives = 143/385 (37%), Gaps = 32/385 (8%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           N   +I + +        T  Q+ AI    +          +     G+GKT    + + 
Sbjct: 7   NFSPEIVKALTECGYEKLTPVQQKAIPLARRGHD------ILANAQTGTGKTAAFALPIV 60

Query: 316 AAVEAG--------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             +            +AVI+ P   LA+Q    I+ YT+ T I    I G    A ++KA
Sbjct: 61  QNILDSDKSANRHQTRAVILTPTRELAEQVASNIQDYTKYTDIKTVAIFGGKKMATQQKA 120

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           LE        +++ T     + I+   + L  + E   F    R+       +   ++  
Sbjct: 121 LEA----GVDVLVATPGRLIEHIELNNVSLANL-EFLVFDEADRMLDMGFIASIEKIMSG 175

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            T  P+T++ ++     ++K+      R+P +  +   N   + I  +   + + +K   
Sbjct: 176 VTTKPQTMLFSATFSTQMNKLAS-EILRQPKRVSVARENVTADTIAHVVYPVEQERKREL 234

Query: 488 ICPQIEEKKESN---FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGT 541
           +   I  K       F +  E  N L +          + HG  +   +   ++ FK G 
Sbjct: 235 LSELIGRKNWKQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALEEFKTGK 294

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            +++IAT V   G+D+ +   ++  +        +H++ GR GR  +  + +   +    
Sbjct: 295 ARVMIATDVAARGLDIQNLPHVVNFDMPFLAEDYVHRI-GRTGRAGQRGNAVSFVNREEE 353

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLK 626
                  +++     G  I  ++L+
Sbjct: 354 LTLQQVETLI-----GQRIYRKELE 373


>gi|303228490|ref|ZP_07315321.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516848|gb|EFL58759.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 523

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 94/440 (21%), Positives = 161/440 (36%), Gaps = 66/440 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            PT  Q+ AI   +           I Q   G+GKT    + +   V+      Q VI++
Sbjct: 25  EPTPIQQEAIPVAMSGKD------MIGQAQTGTGKTAAFGLPVLERVDGSNRHVQVVILS 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + K  Q T I    I G      + +AL++       II+ T     D
Sbjct: 79  PTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKK----NPQIIVATPGRLMD 134

Query: 389 SIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            +            ++L   DE    G    +     A              +TL+ ++ 
Sbjct: 135 HMDRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPED---------HQTLLFSAT 185

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC-------PQIE 493
               I ++ E     +P    + P     ++IE+  + + + +K   +C       P++ 
Sbjct: 186 MPKAIRELAETYLT-EPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDLQAPELA 244

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R V E   +L +    +  I HG +S   ++SV+  F+ GT  +L+AT V   
Sbjct: 245 IIFTRTKRRVDEVTEALKKRGYMAEGI-HGDLSQQKRDSVIRQFREGTIDILVATDVAAR 303

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   S +   +      +  H++ GR GR  +         P   ++ +    + K 
Sbjct: 304 GLDISGVSHVYNYDLPQDPESYTHRV-GRTGRAGKAGEAYTFVIPREIEHLHAIERLTKR 362

Query: 614 TEDGFLIAEEDLKQRKE--GEILGIKQ----------SGMPKFLIAQPELHDSLLEIARK 661
                 IA    K+R    GE+L  +Q          +G  + L       + LL     
Sbjct: 363 -----KIA----KRRAPSLGEVLEGQQRLAVESLIEMAGNTEELAPFKVNAEELLNDTDS 413

Query: 662 -----DAKHILTQDPDLTSV 676
                 A  +LT++PD T V
Sbjct: 414 VTLIAAALKLLTKEPDTTPV 433


>gi|296502998|ref|YP_003664698.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|296324050|gb|ADH06978.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 455

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 26  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPT 79

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 80  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 135

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 136 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 194

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 195 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 253

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 254 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 313

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 314 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 360


>gi|302384214|ref|YP_003820037.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194842|gb|ADL02414.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 528

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/338 (18%), Positives = 123/338 (36%), Gaps = 27/338 (7%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QA 324
           PT  Q  AI  ++           +     G+GKT    + +   +            + 
Sbjct: 38  PTPIQAQAIPSVMLGKD------LLGIAQTGTGKTAAFALPILHRLAENRVAPLPRTTRC 91

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I++P   LA Q  +  K Y ++    V ++ G +    + +A++        +++ T  
Sbjct: 92  LILSPTRELASQIADSFKAYGRHLGFKVAVVFGGVKYGPQERAIQA----GLDVLVATPG 147

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D +Q   L L   +        Q L L        ++        + L  ++    +
Sbjct: 148 RLLDHMQQKTLDLSSTEIFVLDEADQMLDLGFVKPIRQIVSRIPA-KRQNLFFSATMPTE 206

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---- 500
           I K+      ++P+K  + P +   E I +  + + +G+K   +     +   +      
Sbjct: 207 IGKLAG-ELLKEPVKVQVTPQSTTVERINQSVIHVEQGRKRALLTEMFADDNFTRCLVFT 265

Query: 501 --RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +   ++  +  E        IHG  S   +E  + +FK G  ++L+AT +   GIDV 
Sbjct: 266 KTKHGADKVAAYLEAGGVQAGAIHGNKSQPQRERTLAAFKAGKLRVLVATDIAARGIDVD 325

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             S ++         A +H++ GR  R     S I   
Sbjct: 326 GVSHVVNFELPFVPEAYVHRI-GRTARAGADGSAISFV 362


>gi|238789022|ref|ZP_04632811.1| ATP-independent RNA helicase dbpA [Yersinia frederiksenii ATCC
           33641]
 gi|238722786|gb|EEQ14437.1| ATP-independent RNA helicase dbpA [Yersinia frederiksenii ATCC
           33641]
          Length = 460

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/456 (19%), Positives = 179/456 (39%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + ++  T  Q +A+  IL     +       +   GSGKT    I +   +  G   
Sbjct: 19  LNELGYTEMTPVQAAALPAILNGQDVR------AKAKTGSGKTAAFGIGLLDKIAVGEFV 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+ P   LA Q  + +++  + TQ I +  + G  P  H+  +L        HI++
Sbjct: 73  TQALILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHA----PHIVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L+L  + +        R+       A   ++    P  +TL+ ++ 
Sbjct: 129 GTPGRIQEHLRKKTLVLDDL-KILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
             + I +I+ +   R+P+   +   +  +  IE++    +  K+   +   +   +    
Sbjct: 188 YPVGIERISAR-VQRQPVNVEVEDGDE-EPAIEQVFFETTREKRLPLLIAVLSHYQPASC 245

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +      E    S+  +HG +   D++ V+  F N +C++L+AT V   G
Sbjct: 246 VVFCNTKKDCQSVFEALESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL--- 611
           +D+ D ++++           +H++ GR GR       + L  P     ++     L   
Sbjct: 306 LDIKDLALVVNFELAFDPEVHVHRI-GRTGRAGMSGLAVSLCTPQEMARAHAIEDYLQIK 364

Query: 612 ----------KNTEDGFLIAEEDL--------KQRKEGEILG--IKQSGMPKFLIAQPEL 651
                     ++T          L        K R  G+ILG     +G+    + + ++
Sbjct: 365 LKWTPAEQVSRSTNAMLEPEMVTLCIDGGRKAKIR-PGDILGALTGDAGLTAADVGKIDM 423

Query: 652 H--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
               + + I +  AK  L Q      ++G++ +  L
Sbjct: 424 FPVHAYVAIRKACAKRALAQL-QQGKIKGKNCKARL 458


>gi|195048170|ref|XP_001992482.1| GH24775 [Drosophila grimshawi]
 gi|193893323|gb|EDV92189.1| GH24775 [Drosophila grimshawi]
          Length = 977

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 140/376 (37%), Gaps = 52/376 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L        ++ I Q   GSGKTL  ++     +          G  
Sbjct: 261 KPTAIQSQGWPIAL----SGRDLVGIAQ--TGSGKTLAYMLPAIVHIGNQPPIMRGEGPI 314

Query: 324 AVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           A+++AP   LAQQ    ++ Y      +I    I G   +  + + LER       +II 
Sbjct: 315 ALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQVRDLER----GVEVIIA 370

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAPHVLLMTATPIP 432
           T     D ++           L+L   D     G + Q  K+ ++      ++M +   P
Sbjct: 371 TPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSATWP 430

Query: 433 RT---LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE-------- 481
           +    L    L D     I             I+ I   +E  +R+  +L E        
Sbjct: 431 KEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICNENEKPQRMMRLLKEITPSNNAA 490

Query: 482 --GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G K                +  VE    +  +   +   IHG  S  +++SV+  F+N
Sbjct: 491 NAGNKIIIFV---------ETKIKVEDILQIIRNEGYTATSIHGDKSQSERDSVLRDFRN 541

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +LIAT V   G+DV D   +I  +  +     +H++ GR GR +++ +    + P 
Sbjct: 542 GKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRI-GRTGRCQQLGTAYTFFTPD 600

Query: 600 LSKNSYTRLSVLKNTE 615
            +K +   +SVL+  E
Sbjct: 601 NAKQARELISVLEEAE 616


>gi|40788370|dbj|BAA34521.2| KIAA0801 protein [Homo sapiens]
          Length = 1058

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 400 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 453

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 454 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 513

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 514 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 569

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 570 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 622

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 623 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 682

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 683 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 741

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 742 KGYAYTFITEDQARYAGDIIKALE 765


>gi|330448082|ref|ZP_08311730.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492273|dbj|GAA06227.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 627

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 83/373 (22%), Positives = 146/373 (39%), Gaps = 28/373 (7%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           L N+ F +PT  Q ++I  +L        +  + +   G+GKT    + +   V   +  
Sbjct: 21  LDNMGFVAPTPIQAASIPLLLTG------VDALGKAQTGTGKTAAFSLPVLNKVNLSQHK 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++MAP   LA Q    +K   QN   + V  I G      + +AL       AHI++
Sbjct: 75  PQAIVMAPTRELAIQVAAEMKTLGQNIKGLKVLEIYGGASIVDQMRAL----KNGAHIVV 130

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLT 438
           GT    +D I   +L    +DE H F + +    L          +M   P   + ++ +
Sbjct: 131 GTPGRVKDLISRKQL---HLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPESAQRVLFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     + +I ++   R P +  +   NR    +E+   V+   +K   +   +E +   
Sbjct: 188 ATMPPIVKEIVDRFL-RNPERIDVAGENRTVSKVEQQFWVVKGVEKDEAMSRLLETEDTD 246

Query: 499 ------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R   ER            A +HG +    +E  +D  K G   +L+AT V+ 
Sbjct: 247 ASIVFVRTRQDTERLADWLCSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   + +   +      + +H++ GR GR       ILL      +   T   V K
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRTGKAILLVRTNQIRMLRTIERVTK 365

Query: 613 NTEDGFLIAEEDL 625
           +  +   +   DL
Sbjct: 366 SRMEEIQLPLRDL 378


>gi|324329406|gb|ADY24666.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 481

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 139/371 (37%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYDHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+   L L  +        DE    G   ++   + +  T    +L +AT  
Sbjct: 129 TPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +I         I+ V+  +   +++     V   E   +  I 
Sbjct: 189 EDVEKLSRTYMNSPTHIEIKAAGVTTDKIEHVLFEVIEDEKLSLLKDVTTIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + ++  +  +R          +        IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQDNVDHVYRQ--------LKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|228958720|ref|ZP_04120433.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800935|gb|EEM47839.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 458

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|229044202|ref|ZP_04191878.1| ATP-dependent RNA helicase [Bacillus cereus AH676]
 gi|229145047|ref|ZP_04273440.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24]
 gi|228638368|gb|EEK94805.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24]
 gi|228725143|gb|EEL76424.1| ATP-dependent RNA helicase [Bacillus cereus AH676]
          Length = 458

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|229150655|ref|ZP_04278869.1| ATP-dependent RNA helicase [Bacillus cereus m1550]
 gi|228632742|gb|EEK89357.1| ATP-dependent RNA helicase [Bacillus cereus m1550]
          Length = 454

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEQAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PDSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     +I  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFIMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|167522064|ref|XP_001745370.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776328|gb|EDQ89948.1| predicted protein [Monosiga brevicollis MX1]
          Length = 498

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 83/435 (19%), Positives = 167/435 (38%), Gaps = 54/435 (12%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ 323
           IL+ + +  PT  Q  AI  ++        ML I     G GKTL  L+ +   V    +
Sbjct: 74  ILKQLKYENPTPIQAQAIPVVM----SGRDMLGI--AKTGCGKTLAFLLPLLRHVMDQRK 127

Query: 324 A-----------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                       +IM+P   LA Q Y   +K+ ++  + V  + G    + +   L+   
Sbjct: 128 CAQGEASPGCIGLIMSPTRELALQIYNETRKFCKHLDLRVVCLYGGSDISDQIALLKSA- 186

Query: 373 HGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
              A II+ T     D +           +   V +DE  R                  +
Sbjct: 187 ---AEIIVCTPGRMIDMLTVNSGRVTNLRRCTYVALDEADRMFDMGFE------PQVTRI 237

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           L    P  +T++ ++     +  +  K    KP++  +   + +  +I++  +V+ EG+K
Sbjct: 238 LDNIRPDRQTVMFSATFPRAMEALARK-ILTKPVEVTVGGRSIVSNIIKQNVIVMREGEK 296

Query: 485 AYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
              +   +    E      F    E+ +S+ E+   +      +HG +S  D+ S +  F
Sbjct: 297 FQKLLELLGHFFEQGSIIVFVHKQEKADSVLENLIKNGYPCLALHGAVSQEDRASNLRDF 356

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + G  K+++AT++   G+DV    +++  +  +     +H+  GR GR     +      
Sbjct: 357 RAGNVKIMVATSIAARGLDVKQLCLVVNYDCPNHYEDYVHR-CGRTGRAGREGTAYTFLT 415

Query: 598 PPLSKNSYTRLSVLKNT-----EDGFLIAEED-LKQRKEGEILGIKQSGMPKFLIAQPEL 651
               K +   +  L  +     ED   + ++  L+Q+  G+ +G + SG           
Sbjct: 416 ADDKKYAGNIIRALHASKAQVPEDLQKLWDQYKLEQKAAGKKVG-RTSGFSG--RGYKFT 472

Query: 652 HDSLLEIARKDAKHI 666
            + L++  +K    +
Sbjct: 473 AEDLIKQKQKKLLAL 487


>gi|229065471|ref|ZP_04200719.1| ATP-dependent RNA helicase [Bacillus cereus AH603]
 gi|228715789|gb|EEL67561.1| ATP-dependent RNA helicase [Bacillus cereus AH603]
          Length = 450

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PDSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYME-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 VSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|120564782|gb|ABM30180.1| VASA2n [Paragonimus westermani]
          Length = 606

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 135/373 (36%), Gaps = 44/373 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAG---------- 321
           PT  Q+ AI  I  +         +     GSGKT   LI +    +E G          
Sbjct: 154 PTPVQKHAIPIIASNRD------LMACAQTGSGKTAAFLIPILNRMIEEGPGDSLIATME 207

Query: 322 ----GQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                Q   A+I+AP   LA Q +E  +K+   ++I   ++ G    A  R  L  ++ G
Sbjct: 208 TNRRKQFPVALILAPTRELASQIFEDARKFAYRSRIRPCVLYGG---ADMRAQLIEVSKG 264

Query: 375 QAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             ++++ T     D I+  ++ L       +DE  R          ++      L  +  
Sbjct: 265 -CNLLVATPGRLTDVIERGRIGLDHCRFLILDEADRMLDMGFEPQIRRIVEQDNLPPS-- 321

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              +TL+ ++    +I  +  K    + I   +  +    E I +    + E KK   + 
Sbjct: 322 GKRQTLMFSATFPHEIQMLA-KDFLSRYIFLAVGRVGSTSENITQSISWVEEDKKRDALV 380

Query: 490 PQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +               +   +            +A IHG  +  D+E  +  F+NG  
Sbjct: 381 DLLSSSDPGVLTLVFVETKRGADSLEDYLFSQKFQVASIHGDRTQDDRELALSCFRNGRT 440

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++     
Sbjct: 441 PILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRI-GRTGRVGNLGIATSFFNDKNRN 499

Query: 603 NSYTRLSVLKNTE 615
            +   + +L+   
Sbjct: 500 LARGLVELLEEVN 512


>gi|30020539|ref|NP_832170.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|229127843|ref|ZP_04256829.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4]
 gi|29896090|gb|AAP09371.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|228655608|gb|EEL11460.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4]
          Length = 458

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|195394063|ref|XP_002055665.1| GJ19487 [Drosophila virilis]
 gi|194150175|gb|EDW65866.1| GJ19487 [Drosophila virilis]
          Length = 953

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 147/399 (36%), Gaps = 52/399 (13%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
             F++    P  ++    Q   +     PT  Q       L        ++ I Q   GS
Sbjct: 237 ANFEESSLPPHIIDEMKRQGFTK-----PTAIQAQGWPIAL----SGRDLVGIAQ--TGS 285

Query: 305 GKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEI 354
           GKTL  ++     +          G  A+++AP   LAQQ    ++ Y      +I    
Sbjct: 286 GKTLAYMLPAIVHIGNQPPIMRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTC 345

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRF 406
           I G   +  + + LER       +II T     D ++           L+L   D     
Sbjct: 346 IFGGSSKVPQARDLER----GVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDM 401

Query: 407 GVQ-QRLKLTQKATAPHVLLMTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIKTVI 462
           G + Q  K+ ++      ++M +   P+    L    L D     I             I
Sbjct: 402 GFEPQIRKIIEQIRPDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQI 461

Query: 463 IPINRIDEVIERLKVVLSE--------GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
           + I   +E  +R+  +L +              I   +E       +  VE    +    
Sbjct: 462 VEICNENEKPQRMVRLLKDIAPTTNNAANNGNKIIIFVET------KIKVEDILQIIRSE 515

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             +   IHG  S  +++SV+  F+NG   +LIAT V   G+DV D   +I  +  +    
Sbjct: 516 GYTATSIHGDKSQSERDSVLKDFRNGKSNILIATDVASRGLDVEDLQFVINYDYPNSSEN 575

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            +H++ GR GR +++ +    + P  +K +   +SVL+ 
Sbjct: 576 YVHRI-GRTGRCQQLGTAYTFFTPDNAKQARELISVLEE 613


>gi|109898452|ref|YP_661707.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109700733|gb|ABG40653.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 435

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 126/346 (36%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
            P+  Q  AI  IL+          +     G+GKT    + +   +  G        +A
Sbjct: 23  DPSPIQAQAIPAILEGKD------IMAAAQTGTGKTAGFTLPLLELLNRGTHARGNQARA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q    +  Y ++  +   ++ G +    +   L +       I++ T  
Sbjct: 77  LVLTPTRELAAQVAASVVDYGKDLPLRSAVVFGGVGINPQMIKLRK----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L ++++DE  R      +   +K       ++   P  R  +L S
Sbjct: 133 RLLDLYNQNAVRFDDLEILVLDEADRMLDMGFIHDIKK-------VLKLLPTKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N   E +E+    + + +K   +   I++     
Sbjct: 186 ATFSDDIRALAKGLVNNPVEVSVSPPNTTVEAVEQFVCPVDKNQKTPALIRMIKDNDWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E    + A IHG  S   +   +  FK+G  + L+AT +   
Sbjct: 246 VLVFSRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKSGKVRALVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+     ++  +  +     +H++ GR GR       I L    
Sbjct: 306 GLDISQLPQVVNYDLPNVAEDYVHRI-GRTGRAGASGQAISLVTAD 350


>gi|328697410|ref|XP_001948642.2| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 718

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 139/367 (37%), Gaps = 47/367 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L        ++ I Q   GSGKTL  ++  A  +          G  
Sbjct: 129 EPTAIQAQGWPIAL----SGRDLVGIAQ--TGSGKTLAYMLPAAVHISNQEPLQRGDGPI 182

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQ   + + K   ++ I    I G  P+  +   L+        I+I T 
Sbjct: 183 ALVLAPTRELAQ-QIQSVAKMFSSS-IRNTCIFGGTPKGPQAHDLQN----GVEIVIATP 236

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 237 GRLIDFLERGSTNLKRVTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKE 296

Query: 434 TLVLTSLGDIDISKIT----EKPAGRKPIK-TVIIPINRID-EVIERLKVVLSE-GKKAY 486
              L +   +D  +I     E  A     +   +   +  D ++ + L  + +E G KA 
Sbjct: 297 VQALAADFLVDYIQINVGSLELAANHNIQQLIEVCEDHEKDYKLFDLLMKISNEPGFKAI 356

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
               + ++  E   +   E + +   H         G  S  D++ V++ F+NG   +L+
Sbjct: 357 IFVEKKKKVDELTRQIKNEGYIATSMH---------GDKSQQDRDHVLNEFRNGKSPILV 407

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV D   +I  +  +     +H++ GR GR ++       +     + +  
Sbjct: 408 ATDVAARGLDVDDVKYVINFDYPNSSEDYVHRI-GRTGRSKQAGIAYTFFSTNNMRQAKD 466

Query: 607 RLSVLKN 613
            +S+L+ 
Sbjct: 467 LISILEE 473


>gi|301053986|ref|YP_003792197.1| ATP-dependent RNA helicase [Bacillus anthracis CI]
 gi|300376155|gb|ADK05059.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 454

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +         IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|228924198|ref|ZP_04087469.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835416|gb|EEM80786.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 481

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 139/371 (37%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYDHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++AP   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLAPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+   L L  +        DE    G   ++   + +  T    +L +AT  
Sbjct: 129 TPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +I         I+  +  +   +++     V   E   +  I 
Sbjct: 189 EDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  +R          +        IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVYRQ--------LKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|228936735|ref|ZP_04099526.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228822944|gb|EEM68785.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 481

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 137/371 (36%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   L+      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYENPTEVQGEVIPVALK------KRDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L L  +        DE    G   Q   +  +     + ++ +  +P
Sbjct: 129 TPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLP 188

Query: 433 RTLVLTSLGDIDI---SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
             +   S   +D+    +I         I+  +      +++     V   E   +  I 
Sbjct: 189 EDVEKLSRTYMDLPTYIEIKAAGITTDKIEHTLFETREEEKLSLLKDVTTIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  FR                   IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVFRQ--------LNRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P   +      S
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNKGKAITFITPYEDRFLEEIES 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|164655646|ref|XP_001728952.1| hypothetical protein MGL_3946 [Malassezia globosa CBS 7966]
 gi|159102840|gb|EDP41738.1| hypothetical protein MGL_3946 [Malassezia globosa CBS 7966]
          Length = 396

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 132/371 (35%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AI  IL+          I Q   G+GKT    IAM   ++      QA++++
Sbjct: 45  KPSAIQQRAILPILRGRDV------IAQAQSGTGKTATFSIAMLQTIDISLRETQALVLS 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + LE       HI+ GT     D
Sbjct: 99  PTRELATQIQSVVLALGDYMNVQCHACIGGTSVGEDIRKLEYGQ----HIVSGTPGRVFD 154

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I+   L    +        DE    G + ++    +    A  V+L++AT     L +T
Sbjct: 155 MIRRRHLRTKNIKMLIMDESDELLNMGFKDQIYDIYRYLPPATQVVLVSATLPHDVLEMT 214

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    D  +I  K      + IK   + + + D   + L  +       +A   C     
Sbjct: 215 SKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNT--- 271

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R  V+            ++ +HG M   +++++M  F+ G  ++LI T V   G
Sbjct: 272 ------RRKVDWLTDRMRENNFQVSSMHGEMQQKERDAIMGEFRQGGSRVLITTDVWARG 325

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV + S++I  +        +H++ GR GR       I        K            
Sbjct: 326 IDVQNVSLVINYDLPTNRENYIHRI-GRSGRFGRKGVAINFVTTEDVKILRDIEQYYSTQ 384

Query: 615 EDGFLIAEEDL 625
            D   +  +DL
Sbjct: 385 IDEMPMKIDDL 395


>gi|153825002|ref|ZP_01977669.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
 gi|149741327|gb|EDM55361.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
          Length = 464

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 128/344 (37%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A I++ T  
Sbjct: 77  LILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ---RMCKG-ADILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRK-------ILKLLPEKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                  +   K     P++  + P N     +E+        KK   +   ++E     
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|224368898|ref|YP_002603060.1| RhlE1 [Desulfobacterium autotrophicum HRM2]
 gi|223691615|gb|ACN14898.1| RhlE1 [Desulfobacterium autotrophicum HRM2]
          Length = 427

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 67/371 (18%), Positives = 141/371 (38%), Gaps = 41/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------EAGGQA 324
           +P+  Q  AI  +L+          +     G+GKTLV  + +   +           +A
Sbjct: 42  TPSPIQVRAIPAVLKGRDV------MAAAQTGTGKTLVFTLPVLERLSKLAPVQANQVRA 95

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +  + ++  +    + G +    +   L     G   +++ T  
Sbjct: 96  LVLVPTRELAVQIGESVTTFGRHLHLRSTAVFGGVKINPQMMKLR----GGVDVLVATPG 151

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      +    K       ++   P  R  ++ S
Sbjct: 152 RLLDLHSKNAVKFDRLEVLVLDEADRMLNMGFIHDIGK-------IIALLPNQRQTLMFS 204

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   +     P++  + P N + ++I++    + + KK+  +   I + +   
Sbjct: 205 ATFPDEIRDLARGLLHDPVEISVAPPNSVLKIIKQWVYPVDQNKKSALLSKLICDNQWEQ 264

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  ++  +R     E      A IHG  S   +   +++FK GT ++L+AT +   
Sbjct: 265 VLVFSKTKNGADRLVRHLEKEGIDAAAIHGDKSQGARTKALENFKKGTVRILVATDIAAR 324

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK- 612
           G+D+     ++  +  H     +H L GR GR       I L      +       ++K 
Sbjct: 325 GLDIYQLPQVVNFDLPHVKEDYVH-LMGRTGRAGAPGQVISLVCADEFQQLSDIERLIKM 383

Query: 613 ----NTEDGFL 619
                  DGF 
Sbjct: 384 VLTRKIIDGFE 394


>gi|221117600|ref|XP_002163251.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Hydra magnipapillata]
          Length = 790

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 125/379 (32%), Gaps = 37/379 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  A+   L           I     GSGKT   +  M   + A        G  
Sbjct: 298 KPTPIQSQAVPVALSGRD------IIGIARTGSGKTAAFVWPMLVHIMAQPVLKEGDGPI 351

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I AP   L QQ     K++ +   + V    G   +  + K L++     A I++ T 
Sbjct: 352 ALICAPTRELCQQINSECKRFGKCYNLRVIACYGGGSKWEQTKGLQQ----GAEIVVCTP 407

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPR 433
               D I+           L+    D     G + +++            LL +AT   +
Sbjct: 408 GRLIDLIKAKATNLLRVTYLVFDEADRMFDMGFEPQVRSIANNVRPDRQCLLFSATMKKK 467

Query: 434 TLVLTSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L      D  +I   E     + I   +  +    +    L   + E      +   
Sbjct: 468 VEWLCRDILSDPIRIVVGELGEANEDIVQAVEVMKSPQQKWNWLLSHIVEFTSGGSVLIF 527

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           + +K      +  E   +L E     + +IHG     ++ +V+  FK     +L+AT V 
Sbjct: 528 VTKKS-----NSEEVAANLKEQGYE-LGLIHGDFDQFERNNVLKQFKQKQFLILVATDVA 581

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     +I  +         H++ GR GR  E      L  P  +  +   +  L
Sbjct: 582 ARGLDIPSIKTVINYDVARDITTHTHRI-GRTGRAGEKGIAYTLITPQDTHFAADLVRNL 640

Query: 612 KNTEDGFLIAEEDLKQRKE 630
           +           DL  +  
Sbjct: 641 EGANQRVPDELLDLALKNP 659


>gi|159463464|ref|XP_001689962.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283950|gb|EDP09700.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 567

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 137/379 (36%), Gaps = 44/379 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  A    L           +     GSGKT   L+     ++A       G   
Sbjct: 147 SPTPIQAQAWPIALSGRD------LVAIAKTGSGKTCGFLLPGMLHIQATRKDARVGPTL 200

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q      K+ +++ I    + G  P+  + + L+        I+I T  
Sbjct: 201 LVLAPTRELAVQIKTEADKFGRSSGIRNTCVYGGAPKGPQLRDLQY----GVQIVIATPG 256

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPR- 433
              D ++  +        L+L   D     G + +++   +        L  +AT     
Sbjct: 257 RLNDFLEAGQVRLQQVSYLVLDEADRMLDMGFEPQIQRIVRTLPRQRQTLFFSATWPREV 316

Query: 434 -----TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
                  V+     + I  + EK    K I   +  +N + E    L  ++        I
Sbjct: 317 KHIASQFVVNQTVHVFIGGVEEKLVANKSITQYVSVVNGMHEKFAELAKIIRAKPPGTRI 376

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                 K+  +  S                A IHG     +++ V+ +FK+G   +L+AT
Sbjct: 377 IIFCTTKRMCDQLSY-------QMGREFRSAAIHGDKKQSERDYVLQAFKDGRTPILVAT 429

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ + + ++  +        +H++ GR GR               +K++   +
Sbjct: 430 DVAARGLDIPNVAAVVNFDFPTGTEDYIHRI-GRTGRAGATGESYTFMSQEDAKHARDLM 488

Query: 609 SVLKNTEDGFLIAEEDLKQ 627
            V++  E G  I+ E L+Q
Sbjct: 489 QVMR--EAGQTISPE-LEQ 504


>gi|256848375|ref|ZP_05553818.1| autoaggregation-mediating protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714973|gb|EEU29951.1| autoaggregation-mediating protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 500

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/341 (18%), Positives = 127/341 (37%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q   I  +L+          I Q   G+GKT    + +   ++      QA++++P 
Sbjct: 37  TPIQAQTIPMVLKGQDV------IGQAQTGTGKTAAFGLPIIEHIDLDNPAIQAIVISPT 90

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + +   +  + V+++ G      +  +L++       I++GT    +D I
Sbjct: 91  RELAIQTQEELYRLGHDKHVKVQVVYGGADIRRQINSLKK----HPQILVGTPGRLRDHI 146

Query: 391 QYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT--LVLT 438
                       L+L   DE    G        + +       LL +AT  P    + + 
Sbjct: 147 SRGTVNLEHIQTLVLDEADEMLNMGFLDDIEAIIKETPEKRQTLLFSATMPPEIKRIGVQ 206

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D  + KI  K      +    +     ++     +++  +      +  + + + + 
Sbjct: 207 FMRDPQMVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRLIDVQDPDLTIVFGRTKRRVDE 266

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             R +V R          + A IHG ++   +  +M  FKNG   +L+AT V   G+D+ 
Sbjct: 267 LSRGLVAR--------GYNAAGIHGDLTQDRRSKIMKKFKNGDLDILVATDVAARGLDIS 318

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR       +    P 
Sbjct: 319 GVTHVYNYDIPSDPDSYVHRI-GRTGRAGHHGVSLTFVTPN 358


>gi|229099881|ref|ZP_04230804.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-29]
 gi|228683496|gb|EEL37451.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-29]
          Length = 481

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 137/371 (36%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   L+      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYEHPTEVQGEVIPVALK------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+   L L  +        DE    G   ++   + +  T    +L +AT  
Sbjct: 129 TPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +I         I+  +      +++     V   E   +  I 
Sbjct: 189 EDVEKLSRTYMDSPTHIEIKAAGITTDKIEHTLFETREEEKLSLLKDVTTIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  FR                   IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVFRQ--------LNRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++      +
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNKGKAITFITPYENRFLEEIEA 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|90414211|ref|ZP_01222192.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90324761|gb|EAS41299.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 431

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 60/384 (15%), Positives = 131/384 (34%), Gaps = 39/384 (10%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 N   +I + +        T  Q+ AI    +          +     G+GKT  
Sbjct: 1   MSFASQNFSPEIVRALTECGYEKLTPIQQQAIPHARRG------SDILANAQTGTGKTAA 54

Query: 310 ALIAMAAAVEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
             + +   +            +A+I+AP   LA Q  + I +YT+ T +    I G    
Sbjct: 55  FSLPIIQQILDKPKSRGRFNVRALILAPTRELAAQIAQNIAEYTKYTDLKTAAIYGGTKM 114

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGV--QQR 411
           + + + LE+       I++ T     + +    + L  +        D     G     R
Sbjct: 115 SSQERTLEK----GVDILVATPGRLIEHVDLKNVSLTNIEFLVFDEADRMLDMGFITDMR 170

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRID 469
             + +  + P +++ +AT   +   L S       +I    +      +  V+ P+++  
Sbjct: 171 KVMGEVNSNPQIMMFSATSSKQMNALASDILRKPKRIMVDRENTTADTVAHVVYPVDQER 230

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           +     +++  +  K   +    +E       +  E    L +    ++ + HG  +   
Sbjct: 231 KRELLSELIGKKNWKQVLVFVNYKE-------TANELVKELKKDGIKAV-LCHGDKAQSA 282

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +   +D FK G  ++++AT V   G+D+     ++  +        +H++ GR GR    
Sbjct: 283 RRRALDEFKEGKARVMVATEVAARGLDIQALPHVVNFDMPFLAEDYVHRI-GRTGRAGLK 341

Query: 590 SSCILLYHPPLSKNSYTRLSVLKN 613
              I                ++  
Sbjct: 342 GHAISFVSKEEELTLVQVEQLIGQ 365


>gi|242021756|ref|XP_002431309.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212516577|gb|EEB18571.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 675

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/364 (21%), Positives = 131/364 (35%), Gaps = 35/364 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L  M     M+ I Q   GSGKTL  ++     +          G  
Sbjct: 144 EPTAIQAQGWPIALSGMD----MVGIAQ--TGSGKTLAYILPAIVHINHQPRLLRGEGPI 197

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  +    +  ++ +    I G  P+  + + LE        I I T 
Sbjct: 198 VLVLAPTRELAQQIQQVACDFGTSSAVRNTCIFGGAPKMLQARDLES----GVEICIATP 253

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 254 GRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKE 313

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L    L D     I             I+ +    E   +L  +L+E        P+
Sbjct: 314 VRRLAEEFLNDYVQINIGSLQLSANHNILQIVDVCSEYEKQTKLLKLLNEIANE----PE 369

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +       +  V+        +      IHG  S  D++ V++ F+ G   +L+AT V 
Sbjct: 370 TKTMIFVETKKKVDEIARAVTRYGYQALAIHGDKSQSDRDYVLNQFRCGRVNILVATDVA 429

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D   +I  +  +     +H++ GR GR ++  +    + P     +   ++VL
Sbjct: 430 ARGLDVDDVKFVINFDYPNNSEDYVHRI-GRTGRHDKTGTAYTFFTPSNVNKAGDLVAVL 488

Query: 612 KNTE 615
           +   
Sbjct: 489 QEAN 492


>gi|320589963|gb|EFX02419.1| RNA helicase [Grosmannia clavigera kw1407]
          Length = 537

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 142/371 (38%), Gaps = 42/371 (11%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------ 320
           +  P +PT  Q       L           +   + GSGKTL   +     + A      
Sbjct: 135 QGFP-APTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPSIVHINAQPLLAP 187

Query: 321 --GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G   +++AP   LA Q  + I K+ ++++I    + G +P+  + + L R       +
Sbjct: 188 GDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGPQIRDLSR----GVEV 243

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTA 428
            I T     D ++  +        L+L   D     G   Q R  L+Q       L+ +A
Sbjct: 244 CIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKILSQIRPDRQTLMWSA 303

Query: 429 TPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEG 482
           T     R L    L D     I           T I+ +    ++ D +++ L+ V+ + 
Sbjct: 304 TWPKEVRNLAADFLTDFIQVNIGSLDLSANHRITQIVEVVSEGDKRDRMLKHLEKVMDDK 363

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +K   +            + V +    L          IHG     +++ V+D FK G  
Sbjct: 364 EKENKVLIFTGT------KRVADDITRLLRQDGWPALSIHGDKQQNERDWVLDQFKTGKS 417

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +++AT V   GIDV + + +I  +  +     +H++ GR GR     + I L+    +K
Sbjct: 418 PIMVATDVASRGIDVRNITHVINYDYPNNSEDYIHRI-GRTGRAGANGTAITLFTTDNAK 476

Query: 603 NSYTRLSVLKN 613
            +   +SVL+ 
Sbjct: 477 QARDLVSVLQE 487


>gi|320158915|ref|YP_004191293.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O]
 gi|319934227|gb|ADV89090.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O]
          Length = 509

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 133/361 (36%), Gaps = 36/361 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  IL+          +     G+GKT    + +   +  G +       A
Sbjct: 23  TPSPIQLQAIPAILEGKDV------MAAAQTGTGKTAGFTLPILERLAKGPRVRANHIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +  Y+++  +   ++ G +    +   L +     A +++ T  
Sbjct: 77  LILTPTRELAAQVQENVFMYSRHLDLNSAVVFGGVKINPQMLRLRK----GADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++I+DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYSQNAVKFDQLEVLILDEADRMLDMGFIRDIRK-------ILALLPAKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     PI+  + P N     +E+        KK   +   I +     
Sbjct: 186 ATFSDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYPADVKKKPAMLAKLINDGDWRQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++           +H++ GR GR  E    I L     +   +    +++ 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRI-GRTGRAGETGKAISLVCALEAPELFAIERLIQE 364

Query: 614 T 614
            
Sbjct: 365 L 365


>gi|254421014|ref|ZP_05034738.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
 gi|196187191|gb|EDX82167.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
          Length = 545

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 147/380 (38%), Gaps = 42/380 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVIM 327
           T  QE AI   L           +     G+GKT    + +   + +G       +A+++
Sbjct: 26  TPIQEQAIPVALAGRDV------LGIAQTGTGKTAAFTLPLVERLASGRARARMPRAIVL 79

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA Q  E   KY + T++   ++ G +    +  AL +       ++I T     
Sbjct: 80  APTRELADQVAESFAKYAKGTKLTWVLLIGGVSMGDQVAALNK----GVDVLIATPGRLL 135

Query: 388 DSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTLVL 437
           D  +  K++L     ++VDE  R      +   ++           L  +AT  P    L
Sbjct: 136 DLFERGKMLLTGVEIMVVDEADRMLDMGFIPDIERIFKLTPPRRQTLFFSATMPPEITRL 195

Query: 438 TSLGDIDISKI-TEKPAGRKPIKT---VIIPINRIDEVIERLKVVLSE--GKKAYWICPQ 491
           T+    D ++I   +PA      T   V IP +        L+ ++S    +     C +
Sbjct: 196 TAAFLKDPTRIEASRPAMTADTITQYIVRIPTSDPKAKRAALRALMSRTDVRNGIVFCNR 255

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +S V+      +      A IHG +    +   +  F++G  K+L+A+ V 
Sbjct: 256 ---------KSEVDIVAKSLKTHGFDAAAIHGDLDQSHRTKTLADFRSGALKILVASDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D S +   +  H     +H++ GR GR  ++    ++  P   K+    L ++
Sbjct: 307 ARGLDIPDVSHVFNYDVSHHADDYVHRI-GRTGRAGKLGQAFMIVTPADDKSLDKVLKLI 365

Query: 612 KNTEDGFLIAEEDLKQRKEG 631
           K      ++ + D    K+G
Sbjct: 366 KMDPQELVLDDIDFDAIKDG 385


>gi|291537820|emb|CBL10931.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis XB6B4]
          Length = 535

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 128/370 (34%), Gaps = 23/370 (6%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + F   T  Q  AI  ++        +  I Q   G+GKT    I +   V+     
Sbjct: 24  IAEMGFEEATPIQSQAIPVVMSG------VDVIGQAQTGTGKTASFGIPVLHKVDPNNKK 77

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +I++P   LA Q  + I+K  +    + +  + G    + + KAL     G A III
Sbjct: 78  TQVIILSPTRELAIQVADEIRKLAKYMHGVKILPVYGGQEISRQIKAL----KGGAQIII 133

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT     D ++   +    V+        + L +  +     +L        +T++ ++ 
Sbjct: 134 GTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQTVLFSAT 193

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I  IT+K      +   ++        IE+    +    K   +   ++       
Sbjct: 194 MPKPILDITKKY-QHDAVTIKVVKKELTVPNIEQYYYDVKRKDKIEVLTRLLDYYNPKLS 252

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N + +V+      +        +HG M    ++ VM  F+ G  ++LIAT V   G
Sbjct: 253 LVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIATDVAARG 312

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV D   +   +        +H++ GR GR                      +   K  
Sbjct: 313 IDVDDVEAVFNYDIPQDDEYYVHRI-GRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCKTK 371

Query: 615 EDGFLIAEED 624
                I   D
Sbjct: 372 IVAMPIPSTD 381


>gi|284037338|ref|YP_003387268.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283816631|gb|ADB38469.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 485

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 128/360 (35%), Gaps = 39/360 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  QE AI  +L       R   +     G+GKT    I +   +              
Sbjct: 24  PTPIQEKAIPILLS------RRDLLGCAQTGTGKTAAFAIPILQLLSEERSKSTGGPRRI 77

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           + +I+ P   LA Q  E    Y ++  I   +I G + Q  +   L+        ++I T
Sbjct: 78  KTLILTPTRELAIQIAESFTAYGRHLNIRNTVIFGGVSQHSQVNTLKA----GVDVLIAT 133

Query: 383 HALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D +         +   ++DE  R      +   +K      ++       ++L  
Sbjct: 134 PGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKK------VITKLPTHRQSLFF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    D++K+ +      P K  + P++   + IE+    + +  K   +   +++K  
Sbjct: 188 SATMPPDVAKLADTILN-NPAKVEVTPVSSTADTIEQAMYFVGKEDKRKLLVHILDDKNI 246

Query: 498 S------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   ++              IHG  S   ++  + +FK+   ++L+AT + 
Sbjct: 247 KSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETRVLVATDIA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV + S +I     +     +H++ GR GR       +       ++       ++
Sbjct: 307 ARGIDVDELSHVINYELPNIPETYVHRI-GRTGRAGHDGIALSFCDAEETEYLRDIHKLI 365


>gi|332971571|gb|EGK10521.1| ATP-dependent RNA helicase [Kingella kingae ATCC 23330]
          Length = 481

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 126/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L +         +     GSGKT   L+     +           + 
Sbjct: 45  SPTPIQMQAIPAALDNRD------IMASAQTGSGKTAAFLLPSLQKLTQRSEKSGKSPRV 98

Query: 325 VIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +  + Y+QN   +    + G      + KAL R       +I+ T 
Sbjct: 99  LVLTPTRELAAQVEKNAQIYSQNMKWLRSVTLVGGSSFGQQIKALSRP----IDVIVATP 154

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      I + +L ++++DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 155 GRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIET-------IVAATPEDRQTLLF 207

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    I   ++  ++ E+L     +  K   +   + +   
Sbjct: 208 SATWDGAVGKLARK-LTKNPEVIEIEREDKQGKIEEQLLYCDDKNHKNRLLDHILRDANI 266

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 267 DQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 326

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 327 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRSGIAISF 369


>gi|258591206|emb|CBE67503.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
           (rhlE gene) [NC10 bacterium 'Dutch sediment']
          Length = 479

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 81/372 (21%), Positives = 131/372 (35%), Gaps = 42/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ----AVIM 327
           SPT  Q  A+  +L+          +     GSGKT   L+ +   +    +    A+++
Sbjct: 23  SPTPIQRVAVPPLLEGRDV------MASAVTGSGKTAAFLLPILHCLMEKPRGTTRALVL 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA Q  + +++   +T +    + G +    + +A  R       ++I T     
Sbjct: 77  APTRELAAQISDHLRELAAHTPLKGAAVYGGVSMGPQEQAFRR----GVDVLIATPGRLL 132

Query: 388 DSIQYY--------KLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT---PIPRT 434
           D  QY          L+L   D     G     R  L         LL +AT   PI   
Sbjct: 133 DHFQYPYARLAGIEHLVLDEADRMLDMGFLPDIRRILQHVPKKRQTLLFSATLPAPIME- 191

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L    L +     I  K A    I  V  P+    E+   L + L +   +  +      
Sbjct: 192 LARDMLQNPVSLNIERKAAPAAGITHVAYPV--PHELKSTLFLELVKNSASKHVLAFTRT 249

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           K  +N      R     E    +   IHG  S   +   + SFK G C++L+AT +   G
Sbjct: 250 KHRAN------RLADFLEKHGVTCERIHGNRSQAQRTEALASFKRGRCRVLVATDIAARG 303

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL--- 611
           IDV    +++  +        +H++ GR GR +       L  P          S +   
Sbjct: 304 IDVEALGLVVNFDVPQLPEDYIHRV-GRTGRVDATGDAYTLVSPNEEGTLRAIESNIGTR 362

Query: 612 --KNTEDGFLIA 621
             +    GF  A
Sbjct: 363 LPRQKVQGFNYA 374


>gi|78186470|ref|YP_374513.1| DEAD/DEAH box helicase-like [Chlorobium luteolum DSM 273]
 gi|78166372|gb|ABB23470.1| ATP-dependent RNA helicase CsdA [Chlorobium luteolum DSM 273]
          Length = 590

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/377 (19%), Positives = 137/377 (36%), Gaps = 46/377 (12%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   + L+ + +  PT  Q   I  +L+          + Q   G+GKT    + + + 
Sbjct: 18  SEPIMRALKEVGYETPTPIQARTIPLMLEGRDV------LGQAQTGTGKTAAFALPILSG 71

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAH 373
           ++      Q +++AP   LA Q  E   KY +      V  I G      + + L+R   
Sbjct: 72  IDLSLTDPQVLVLAPTRELAIQVAEAFHKYAEYLKGFHVLPIYGGQDYGGQLRMLKR--- 128

Query: 374 GQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
              H+++GT     D ++   L        +L   DE  R G    ++            
Sbjct: 129 -GVHVVVGTPGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFIDDVEWILGE------- 180

Query: 426 MTATPIPRTLVL-TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
              TP  R + L ++     I +I +K        T+      ++ + +  +  +  G  
Sbjct: 181 ---TPKERQVALFSATMPAPIRRIAQKYLNSPAEVTIEGKTTTVETIRQ--RYWIVGGSH 235

Query: 485 AYWICPQIEEKKESN--------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              I  +I E +               +E    L     ++ A+ +G M    +E  +D 
Sbjct: 236 KLDILTRILEVEPFEGMLIFVRTKTMTLELAEKLQARGYAAAAL-NGDMVQNQRERTVDQ 294

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            K+G+  ++IAT V   G+DV   S +I  +  +   + +H++ GR GR       IL  
Sbjct: 295 LKDGSLNIVIATDVAARGLDVERISHVINYDVPYDTESYVHRI-GRTGRAGRSGEAILFV 353

Query: 597 HPPLSKNSYTRLSVLKN 613
            P      Y      + 
Sbjct: 354 APREKNMLYAIEKATRK 370


>gi|255081552|ref|XP_002507998.1| predicted protein [Micromonas sp. RCC299]
 gi|226523274|gb|ACO69256.1| predicted protein [Micromonas sp. RCC299]
          Length = 481

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 140/396 (35%), Gaps = 47/396 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N++ KI   I       PT  Q  AI  I            +   + GSGKT    I M
Sbjct: 53  MNLDTKIMMDIKYKEFDKPTPIQAQAIPVICSGRDV------LGCAETGSGKTAAFSIPM 106

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRR 365
                         G  A++MAP   LAQQ  +  K +++++      I+ G    + +R
Sbjct: 107 IQHCLQQPEIKRGDGPFAIVMAPTRELAQQIEKEAKIFSRSSKGFKTTIVVGGTNMSEQR 166

Query: 366 KALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
             L         + + T     D +        ++ LVI+DE  R               
Sbjct: 167 MDL----KNGVEVCVATPGRLIDHLHQGNTNLARVSLVILDEADRMLDMGFEPQI----- 217

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              ++M      +TL+ ++   +++  +       KP+K  +  ++     + +    L 
Sbjct: 218 -REVMMNLPKPHQTLLFSATMPVEVEALAADYLN-KPVKVKVGAVSVPTSNVAQHLEKLV 275

Query: 481 EGKKAYWICPQIEEKKES---------------NFRSVVERFNSLHEHFTSSIAIIHGRM 525
           + +K   +C  + E+K                   ++  +   +L      + A  HG  
Sbjct: 276 DSQKVDRLCELLLEEKAEAEKFGGQLPMTVVFVERKARADEIMTLLNAEGVAAAAFHGGR 335

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S  ++E+ +  F  G C +L+AT V   G+DV     ++  +        +H++ GR GR
Sbjct: 336 SQQEREAALADFTTGRCAVLVATDVAARGLDVKGVQHVVNLDLPRMFEDYVHRV-GRTGR 394

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
                     Y    S         L+  E+G   A
Sbjct: 395 AGMTGRATSFYTDRDSFLVAQIKRALQELENGNAFA 430


>gi|257413647|ref|ZP_04743689.2| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia
           intestinalis L1-82]
 gi|257202759|gb|EEV01044.1| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia
           intestinalis L1-82]
          Length = 553

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 128/370 (34%), Gaps = 23/370 (6%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + F   T  Q  AI  ++        +  I Q   G+GKT    I +   V+     
Sbjct: 42  IAEMGFEEATPIQSQAIPVVMSG------VDVIGQAQTGTGKTASFGIPVLHKVDPNNKK 95

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +I++P   LA Q  + I+K  +    + +  + G    + + KAL     G A III
Sbjct: 96  TQVIILSPTRELAIQVADEIRKLAKYMHGVKILPVYGGQEISRQIKAL----KGGAQIII 151

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT     D ++   +    V+        + L +  +     +L        +T++ ++ 
Sbjct: 152 GTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQTVLFSAT 211

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I  IT+K      +   ++        IE+    +    K   +   ++       
Sbjct: 212 MPKPILDITKKY-QHDAVTIKVVKKELTVPNIEQYYYDVKRKDKIEVLTRLLDYYNPKLS 270

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N + +V+      +        +HG M    ++ VM  F+ G  ++LIAT V   G
Sbjct: 271 LVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIATDVAARG 330

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV D   +   +        +H++ GR GR                      +   K  
Sbjct: 331 IDVDDVEAVFNYDIPQDDEYYVHRI-GRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCKTK 389

Query: 615 EDGFLIAEED 624
                I   D
Sbjct: 390 IVAMPIPSTD 399


>gi|260809351|ref|XP_002599469.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae]
 gi|229284748|gb|EEN55481.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae]
          Length = 623

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 77/365 (21%), Positives = 138/365 (37%), Gaps = 41/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       LQ          +     GSGKTL  ++     +          G  
Sbjct: 132 KPTPIQAQGWPVALQGRD------IVGIAQTGSGKTLAYMLPAIVHINHQPYLERGDGPI 185

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LAQQ  +   K+ ++++I    + G  P+  + + LER       + I T 
Sbjct: 186 CLVLTPTRELAQQVQQEASKFGRSSRIKNTCVFGGSPKGPQIRDLER----GVEVCIATP 241

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G   Q R  + Q       L+ +AT    
Sbjct: 242 GRLIDFLEAGKTNMRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMYSATWPKE 301

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKKAYWI 488
            R L    L +     I   +  A    ++ V ++  +  D  + RL   +  G+K    
Sbjct: 302 VRQLAEEFLKEYTQINIGALQLSANHNILQIVDVVQEHEKDHKLSRLLEEIM-GEKENKT 360

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +E K+  +  +   R +            IHG  S  +++ V++ F++G   +L+AT
Sbjct: 361 IIFVETKRRVDDLTRRMRRDGWPAM------CIHGDKSQPERDWVLNQFRSGKAPILVAT 414

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV D   +I  +  +     +H++ GR  R +   +    + P   K +   +
Sbjct: 415 DVASRGLDVSDIKFVINFDYPNSAEDYVHRI-GRTARSDRTGTAYTFFTPSNLKQTKDLV 473

Query: 609 SVLKN 613
           SVL+ 
Sbjct: 474 SVLQE 478


>gi|156547765|ref|XP_001605842.1| PREDICTED: similar to CG9748-PA [Nasonia vitripennis]
          Length = 708

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 69/387 (17%), Positives = 138/387 (35%), Gaps = 47/387 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ AI  I+       R   +     GSGKT   L+ +   +   G         
Sbjct: 248 KPTPVQKYAIPIII------GRRDVMACAQTGSGKTAAFLVPILNQIYESGPPPLPPNAS 301

Query: 324 --------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                    +++AP   LA Q Y+  +K+   +++   ++ G      + + L+R     
Sbjct: 302 GRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGSNMVEQLRELDR----G 357

Query: 376 AHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
            H+++ T     D +   K+ L     +++DE  R          ++        M  T 
Sbjct: 358 CHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEPQIRRIVEQDT--MPPTG 415

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI-- 488
             +TL+ ++    +I  +  +      I   +  +    E I +  V + E +K  ++  
Sbjct: 416 ERQTLMFSATFPKEIQMLA-RDFLSNYIFLAVGRVGSTSENITQKIVWVEEHEKRSYLLD 474

Query: 489 ----CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
               C   E  +E         +   +       +    +  IHG  S  ++E  +  F+
Sbjct: 475 LLGACNFQEPTQESLTLVFVETKKGADMLEEFLHNQHYPVTSIHGDRSQHEREDALRRFR 534

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L+AT V   G+D+     +I  +        +H++ GR GR   +      ++ 
Sbjct: 535 SGHTPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRI-GRTGRMGNLGLATSFFNS 593

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDL 625
                    +S+L           ED+
Sbjct: 594 KNQNLVRDLVSLLVEANQELPHWLEDM 620


>gi|91206538|sp|Q2U070|DBP2_ASPOR RecName: Full=ATP-dependent RNA helicase dbp2
 gi|83774922|dbj|BAE65045.1| unnamed protein product [Aspergillus oryzae]
          Length = 554

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 134/365 (36%), Gaps = 43/365 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q       L           +   + GSGKTL   +     + A        G   
Sbjct: 153 PTAIQSQGWPMALSGRDV------VGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIV 206

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T  
Sbjct: 207 LVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDLSR----GVEVCIATPG 262

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP-- 432
              D ++  +        L+L   D     G   Q R  ++Q        + +AT     
Sbjct: 263 RLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEV 322

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLKVVLSEGKKAYWI 488
           R L    L D     I           T    V+    + D++I+ L+ ++        I
Sbjct: 323 RQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMENRGNKCLI 382

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       R   E    L +    +++I HG     +++ V++ FK G   +++AT
Sbjct: 383 FT-------GTKRIADEITRFLRQDGWPALSI-HGDKQQQERDWVLNEFKTGKSPIMVAT 434

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV D + ++  +  +     +H++ GR GR     + I  +    SK +   +
Sbjct: 435 DVASRGIDVRDITHVLNYDYPNNSEDYVHRI-GRTGRAGAKGTAITFFTTDNSKQARDLV 493

Query: 609 SVLKN 613
           ++L  
Sbjct: 494 TILTE 498


>gi|290968690|ref|ZP_06560228.1| DEAD/DEAH box helicase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781343|gb|EFD93933.1| DEAD/DEAH box helicase [Megasphaera genomosp. type_1 str. 28L]
          Length = 420

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 77/352 (21%), Positives = 131/352 (37%), Gaps = 23/352 (6%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT+ QE A+  + Q          + Q   G+GKTL  L+     +       Q +I+AP
Sbjct: 26  PTQVQEKALPALFQGRD------ILGQAQTGTGKTLAFLLPALQQIHPDQHQEQVLILAP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q             I +  I G     ++ + L+R       +IIGT     D 
Sbjct: 80  TRELAKQITAVATDLAAALHIDILNIIGGQTIENQLQKLQR----HPQMIIGTPGRLLDH 135

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            + + L L  V         Q L+         +L M  TP  R L+  S    D  K  
Sbjct: 136 CRRHSLNLTGVGRIIVDEADQLLQTGFLEDVDTLLGM--TPKRRQLLFFSATVPDKIKSL 193

Query: 450 EKPAGRKPIKTVIIPINRID-EVIERLKVVLSEGKKAYWICPQIEEKKES---NFRSVVE 505
            K     P    ++  + I  E IE+   ++ E +K  ++C  + E        F +  E
Sbjct: 194 AKKHMHNPFVFHVLEGSSIALETIEQRIYMIKEEQKFSFLCKLLHEMNPYLSVIFCNTKE 253

Query: 506 RFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           R + L         +++ +HG +S   +  V+  F     +LL+AT +   G+D+   + 
Sbjct: 254 RTSILAGQLIRAGFAVSELHGDLSQGRRTQVLRDFSKAKTQLLVATDIAARGLDIAGITH 313

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +   +  H     +H++ GR GR       + L               ++ T
Sbjct: 314 VFNYDVPHDIDYYIHRI-GRTGRAGNEGLAVTLATAADEDWVRRIEHAIRAT 364


>gi|153801601|ref|ZP_01956187.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|124122857|gb|EAY41600.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
          Length = 464

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 128/344 (37%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A I++ T  
Sbjct: 77  LILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ---RMCKG-ADILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRK-------ILKLLPEKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                  +   K     P++  + P N     +E+        KK   +   ++E     
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|20092752|ref|NP_618827.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A]
 gi|19918045|gb|AAM07307.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A]
          Length = 555

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/363 (20%), Positives = 131/363 (36%), Gaps = 41/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG-QAVIMA 328
            PT  QE  I   L+  S       I Q   G+GKT      +   +  ++G  QA+I+ 
Sbjct: 27  EPTPIQEKVIPLFLKGES-----DIIGQAQTGTGKTTAFGAPIIEKIPEKSGYVQAIILT 81

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E +     + ++ V  I G      + + L+        I++GT     D
Sbjct: 82  PTRELAIQVSEELNSIKGDKKLHVVPIYGGQSMTQQLRVLKS----GVDIVVGTPGRIID 137

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            ++   L L  +        DE    G    +K   KAT          P  R L  ++ 
Sbjct: 138 HLERKSLDLEHIAYFVLDEADEMLNMGFIDDIKEILKATG---------PDKRMLFFSAT 188

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
               I  I +K        T I       ++ E++   + E  K   +   I+ + E   
Sbjct: 189 MPKPILGIVKKYMQNYEHVT-IEKEELAAKLTEQIYFEVQENDKFEALSRIIDIEDEFYG 247

Query: 501 RSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                                     +HG +S  ++E +++ F+     +L+AT V   G
Sbjct: 248 LVFCRTKTDTGQLAQKLSDRGYEADALHGDLSQQEREKILNKFRKQKINVLVATDVAARG 307

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP----PLSKNSYTRLSV 610
           ID++D + +I  +      + +H++ GR GR  +  + I          L+    T  S 
Sbjct: 308 IDIMDLTHVINYSLPQDPESYVHRI-GRTGRAGKQGTAITFVTSTEFRRLTYIKKTSKSE 366

Query: 611 LKN 613
           +K 
Sbjct: 367 MKK 369


>gi|115471651|ref|NP_001059424.1| Os07g0301200 [Oryza sativa Japonica Group]
 gi|75325214|sp|Q6YS30|RH5_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 5
 gi|34394349|dbj|BAC84904.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113610960|dbj|BAF21338.1| Os07g0301200 [Oryza sativa Japonica Group]
          Length = 512

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/395 (18%), Positives = 142/395 (35%), Gaps = 43/395 (10%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
              K              Q +     F  P+  Q  A   +L           I     G
Sbjct: 86  ADAKYAPLSSFAATALPPQVLDCCKGFERPSPIQAYAWPYLLDGRD------FIGIAATG 139

Query: 304 SGKTLVALIAMAAAVEAG----------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           SGKT+   +     V              + ++++P   LAQQ  + + +      I   
Sbjct: 140 SGKTIAFGVPALMHVRRKMGEKSAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCGISSV 199

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGV 408
            + G   +  +  AL+        I+IGT    +D I+     L  V     DE  R   
Sbjct: 200 CLYGGTSKGPQISALKS----GVDIVIGTPGRMKDLIEMGICRLNDVSFVVLDEADRM-- 253

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
              L +  +     +L  TA+ + +T++ ++     + ++ ++     PIK VI   +  
Sbjct: 254 ---LDMGFEPEVRAILSQTAS-VRQTVMFSATWPPAVHQLAQEFMDPNPIKVVIGSEDLA 309

Query: 469 --DEVIERLKVVLSEGKKAYWICPQIEEKKESNFR--------SVVERFNSLHEHFTSSI 518
              +V++ ++V+    + +  +    +  K    R            R  ++ +    S 
Sbjct: 310 ANHDVMQIVEVLDDRSRDSRLVALLDKYHKAQRNRVLVFVLYKREATRVETMLQRRGWSA 369

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG  +  D+   +  FK G+C L+IAT V   G+D+ D  ++I  +        +H+
Sbjct: 370 VSVHGDKAQHDRTKALSLFKEGSCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHR 429

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + GR GR  +       +       +   ++VL+ 
Sbjct: 430 I-GRTGRAGKKGVAHTFFTQENKGLAGELVNVLRE 463


>gi|119384480|ref|YP_915536.1| DEAD/DEAH box helicase domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119374247|gb|ABL69840.1| DEAD/DEAH box helicase domain protein [Paracoccus denitrificans
           PD1222]
          Length = 479

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 81/420 (19%), Positives = 149/420 (35%), Gaps = 41/420 (9%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           PR   D   T+  R R   +E            ++   EI       G  A+  +  +P 
Sbjct: 35  PRFRSDKPNTNHRRHRAEPEEKFI---------RRAIPEIDTAFTRMGIDARVAIN-LPG 84

Query: 271 ---FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---- 323
               +P+  QE +I  I+           +     G+GKT    + M   +   G+    
Sbjct: 85  LGIETPSPIQEKSIPGIVAGRD------LLGLAQTGTGKTAAFGLPMLTRLLNIGRKPEP 138

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               A+I+AP   LA Q  E I  Y   T I    + G      + + LER       ++
Sbjct: 139 RTCRALILAPTRELATQIAENIDNYAIGTPIRQFRVVGGASINVQVQRLER----GVDVL 194

Query: 380 IGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           I T     D I+   + L            Q L +        +  M      +TL+ ++
Sbjct: 195 IATPGRLIDLIERGAIDLSQTRYLVLDEADQMLDIGFIHALRRIAKML-PRERQTLLFSA 253

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                + ++ +      P++  + P  +  E I++    +++G KA  +   + +  +  
Sbjct: 254 TMPKLMEELADSYLN-DPLRVAVNPPGQAAEKIDQGVHFVNQGDKATLLAEYLSKHVDEL 312

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   E+   L + +   +A IHG  S   +E  + SF+ G  K+L+AT V   
Sbjct: 313 AIVFGRTKHGSEKLCKLLDKWGFKVAAIHGNKSQGQRERALASFRAGETKVLVATDVAAR 372

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   + +   +  +     +H++ GR  R       I    P            +K 
Sbjct: 373 GLDIPQVAHVYNYDLPNVPENYVHRI-GRTARAGRDGRAIAFCSPTEIGELRAIEKAMKA 431


>gi|255023649|ref|ZP_05295635.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-208]
          Length = 399

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 131/348 (37%), Gaps = 35/348 (10%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
             + F   T  QE  I   L           I Q   G+GKT    + M   ++      
Sbjct: 20  NRMGFEEATPIQEKTIPLGLAGKD------LIGQAQTGTGKTAAFGLPMIHKIDQKSNNV 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+AP   LA Q  E + K + +  + V  + G    + + ++L++       I++GT
Sbjct: 74  QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKK----NPQIVVGT 129

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PI 431
                D I    L L  V        DE    G    +   L +       LL +AT P 
Sbjct: 130 PGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMPD 189

Query: 432 P-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           P R +    +   ++ +I  K      I+   + ++  ++     +++  +  +   +  
Sbjct: 190 PIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFG 249

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V+  +   +        IHG ++   + SV+  FK G   +L+AT V
Sbjct: 250 RT--------KRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDV 301

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   + +   +      + +H++ GR GR  +    I    P
Sbjct: 302 AARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGMAITFVQP 348


>gi|156391127|ref|XP_001635620.1| predicted protein [Nematostella vectensis]
 gi|156222716|gb|EDO43557.1| predicted protein [Nematostella vectensis]
          Length = 518

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 130/387 (33%), Gaps = 38/387 (9%)

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
            +  I        +     +R + ++ PT+ Q  A+   L           I     GSG
Sbjct: 102 ARPCISFAHFGFDEQMMASIRKLEYTQPTQIQCQALPIALSGRD------IIGIAKTGSG 155

Query: 306 KTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           KT   L      +          G   +I AP   L QQ Y   +++ +   I V  + G
Sbjct: 156 KTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFGKAYNIHVVAVFG 215

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ 409
              +  + KAL+      A I++ T     D ++           L+    D     G +
Sbjct: 216 GGNKYEQSKALQE----GAEIVVATPGRLIDHVKAKATNLHRVTYLVFDEADRMFDMGFE 271

Query: 410 QRLKLTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISK--ITEKPAGRKPIKTVIIPI 465
            +++            LL +AT   +   L     +D  +  I E     + +  ++   
Sbjct: 272 PQVRSIANNVRPDRQTLLFSATFKKKVEHLCRDILVDPVRVVIGELGEANEDVTQIVHIF 331

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           N +    E L   L     A  +   + +      +   E   +        +A++HG M
Sbjct: 332 NSMPSKWEWLTQNLVSFASAGSVLIFVTK------KLNSEELATNLRKNDFEVALLHGDM 385

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++  V+  FK     +L+AT V   G+D+     +I  +         H++ GR GR
Sbjct: 386 DQFERSKVLGQFKKREIPILVATDVAARGLDIPSIKTVINYDVARDITTHTHRI-GRTGR 444

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLK 612
             E  +   L        +   +  L+
Sbjct: 445 AGEKGNAYTLLTQSDQNFAGDLVRNLE 471


>gi|156099810|ref|XP_001615701.1| RNA helicase-1 [Plasmodium vivax SaI-1]
 gi|5679692|emb|CAB51741.1| RNA helicase-1 [Plasmodium cynomolgi]
 gi|148804575|gb|EDL45974.1| RNA helicase-1, putative [Plasmodium vivax]
          Length = 398

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 126/341 (36%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+  IK IL           I Q   G+GKT   +I+    +       QA+I+A
Sbjct: 45  KPSAIQQRGIKPILNGYDT------IGQAQSGTGKTATFVISSLQLINYDYVACQALILA 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + +       ++      G          L++      H+++GT     D
Sbjct: 99  PTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQ----GVHMVVGTPGRVYD 154

Query: 389 SIQYYKLI--------LVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
            I    L         L   DE    G + ++     +      V L +AT     L LT
Sbjct: 155 MIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVALFSATMPQEILELT 214

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D   I  K      + I+   + + + +  ++ L          Y      +   
Sbjct: 215 TRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTL-------CDLYETLTITQSII 267

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+       +   +++ +HG M   D++ +M  F++G+ ++L+ T ++  GID
Sbjct: 268 YCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGID 327

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   S++I  +        +H++ GR GR       I    
Sbjct: 328 VQQVSLVINYDLPCSPDTYIHRI-GRSGRFGRKGVAINFVT 367


>gi|330792086|ref|XP_003284121.1| hypothetical protein DICPUDRAFT_27074 [Dictyostelium purpureum]
 gi|325085935|gb|EGC39333.1| hypothetical protein DICPUDRAFT_27074 [Dictyostelium purpureum]
          Length = 593

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 80/409 (19%), Positives = 141/409 (34%), Gaps = 46/409 (11%)

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDM 288
            + E     +    + K        P      + + +    P +PT  Q  A    L+  
Sbjct: 200 EFRESCMMTVKGRDIPKPIIHFNQAPF-PNYLMKEIMAAGFP-NPTPIQSQAWPIALKGR 257

Query: 289 SQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEF 340
                   I     GSGKTL  L+     + A        G   +++AP   LA Q  E 
Sbjct: 258 D------IIGLAKTGSGKTLAFLLPSIVHINAQPTLKPGDGPIVLVLAPTRELALQIQEQ 311

Query: 341 IKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKL 395
            +K+   +QI    + G   +  +   L++       I+I T     D          ++
Sbjct: 312 ARKFGGTSQISNVCVYGGASKHSQVMMLKK----GVEIVIATPGRLIDILTSGDTNLRRV 367

Query: 396 ILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI-- 448
             +++DE  R        Q R  L+Q       L+ +AT       L +    D  ++  
Sbjct: 368 TYLVLDEADRMLDMGFEPQIRKILSQIRPDRQTLMFSATWPKEVQSLANDFLSDHIQVHI 427

Query: 449 ----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
                        I  V     + + + + L+  +S+  K                + V 
Sbjct: 428 GSSELTANHNVNQIVEVCSEYEKKERLFKFLEANVSKDDKVIIF--------AETRKGVD 479

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           E   SL      SI I HG  S  +++ V+  FKNG   ++IAT +   G+DV D   ++
Sbjct: 480 ELHRSLQSAGFKSIGI-HGNKSQPERDFVLSQFKNGIFPIMIATDLASRGLDVKDIKFVV 538

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
             +  +     +H++ GR  R     + I       ++ +   + VL  
Sbjct: 539 NYDFPNTIETYVHRI-GRTARAGATGTSISFLTRENARLANDLIKVLSE 586


>gi|260768003|ref|ZP_05876937.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
 gi|260616033|gb|EEX41218.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
          Length = 540

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 141/371 (38%), Gaps = 41/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  +LQ          +     G+GKT    + +   +  G +       A
Sbjct: 23  TPSPIQAQAIPAVLQGKDV------MAAAQTGTGKTAGFTLPILERLTGGPRVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +  Y+++  +   ++ G +    +   L +     A +++ T  
Sbjct: 77  LILTPTRELAAQVQECVFTYSRHLPLSSAVVFGGVKINPQMLRLRK----GADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRK-------ILELLPKNRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N   + +E+        KKA  +   I++     
Sbjct: 186 ATFSDEIRALAKGLVNDPVEISVSPANSTAKTVEQCVYPADVKKKAPMLVKLIKDGNWQQ 245

Query: 500 ---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F       N L           A IHG  S   + + +  FK+G  ++L+AT +   
Sbjct: 246 VLVFTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++     +     +H++ GR GR  E    I L     + + +    +++ 
Sbjct: 306 GIDIPQLPQVVNFELPNIAEDYVHRI-GRTGRAGEAGRAISLVCAVEAPDLFGIERLIQQ 364

Query: 614 T-----EDGFL 619
                  DGF 
Sbjct: 365 VLPRVELDGFK 375


>gi|196039972|ref|ZP_03107275.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|196029231|gb|EDX67835.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
          Length = 458

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|254286694|ref|ZP_04961649.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
 gi|150423278|gb|EDN15224.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
          Length = 464

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 128/344 (37%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A I++ T  
Sbjct: 77  LILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ---RMCKG-ADILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRK-------ILKLLPAKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                  +   K     P++  + P N     +E+        KK   +   ++E     
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|237836123|ref|XP_002367359.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii
           ME49]
 gi|14595111|emb|CAC43441.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii]
 gi|211965023|gb|EEB00219.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii
           ME49]
 gi|221484990|gb|EEE23280.1| conserved hypothetical protein [Toxoplasma gondii GT1]
 gi|221505957|gb|EEE31592.1| eukaryotic translation initiation factor 4A, putative [Toxoplasma
           gondii VEG]
          Length = 412

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 75/355 (21%), Positives = 128/355 (36%), Gaps = 37/355 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+  IK IL      +R   I Q   G+GKT    IA    ++      Q +I+A
Sbjct: 61  KPSAIQQRGIKPIL------DRHDTIGQAQSGTGKTATFAIAALQLIDYNINNCQVLILA 114

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + +       Q+      G          L+       H+++GT     D
Sbjct: 115 PTRELAQQIQKVVLALGDYLQVRCHACVGGTVVRDDIAKLKA----GVHMVVGTPGRVHD 170

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
            ++   L        I+   DE    G + ++     +      V L +AT     L LT
Sbjct: 171 MMEKRHLRVDDMKLFIMDEADEMLSRGFKSQIYDVFKKLPPDVQVALFSATMPQDILELT 230

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIE--RLKVVLSEGKKAYWICPQIEE 494
           +    D  +I  K      + I+   + + + D  +E            +A   C     
Sbjct: 231 TKFMRDPKRILVKNDELTLEGIRQFYVAVEKEDWKLETLCDLYETLTITQAIIYCNT--- 287

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R  V+   S       +++ +HG M    +E +M  F++G+ ++LI T ++  G
Sbjct: 288 ------RRKVDFLTSKMSERDFTVSSMHGDMDQKSREMIMREFRSGSTRVLITTDLLARG 341

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           IDV   S++I  +        +H++ GR GR       I        +       
Sbjct: 342 IDVQQVSLVINYDLPATKENYIHRI-GRSGRFGRKGVAINFVTSSDVEQLKEIEK 395


>gi|67613960|ref|XP_667337.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           hominis TU502]
 gi|126643927|ref|XP_001388148.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           parvum Iowa II]
 gi|10720033|sp|O02494|IF4A_CRYPV RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|2150025|gb|AAB58726.1| translation initiation factor [Cryptosporidium parvum]
 gi|2155304|gb|AAB58799.1| translation initiation factor [Cryptosporidium parvum]
 gi|54658467|gb|EAL37111.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           hominis]
 gi|126117225|gb|EAZ51325.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           parvum Iowa II]
 gi|323508859|dbj|BAJ77322.1| cgd1_880 [Cryptosporidium parvum]
 gi|323510549|dbj|BAJ78168.1| cgd1_880 [Cryptosporidium parvum]
          Length = 405

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 75/361 (20%), Positives = 137/361 (37%), Gaps = 33/361 (9%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            +N+EG + + I       P+  Q+  IK IL           I Q   G+GKT   +IA
Sbjct: 35  ALNLEGDLLRGIFAYGFEKPSAIQQRGIKPILDGYDT------IGQAQSGTGKTATFVIA 88

Query: 314 MAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
               ++      Q +++AP   LAQQ  +         ++      G          L+ 
Sbjct: 89  ALQKIDYSLNACQVLLLAPTRELAQQIQKVALALGDYCELRCHACVGGTSVRDDMNKLKS 148

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATA 420
                 H+++GT     D +    L        IL   DE    G + ++     +    
Sbjct: 149 ----GVHMVVGTPGRVFDMLDKGYLRVDNLKLFILDEADEMLSRGFKVQIHDIFKKLPQD 204

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             V L +AT     L LT+    D  +I   ++    + I+   + + + +  ++ L  +
Sbjct: 205 VQVALFSATMPNEILHLTTQFMRDPKRILVKQEELTLEGIRQFYVGVEKDEWKMDTLIDL 264

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
                  Y     ++     N R  V++          + + +HG M   D+E +M  F+
Sbjct: 265 -------YETLTIVQAIIYCNTRRRVDQLTKQMRERDFTCSSMHGDMDQKDREVIMRQFR 317

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G+ ++LI T ++  GIDV   S++I  +        +H++ GR GR  +    I     
Sbjct: 318 SGSSRVLITTDLLARGIDVQQVSLVINYDLPVSPETYIHRI-GRSGRFGKKGVSINFVTD 376

Query: 599 P 599
            
Sbjct: 377 D 377


>gi|301602401|gb|ADK79106.1| vasa-like protein [Dicentrarchus labrax]
          Length = 637

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 67/386 (17%), Positives = 136/386 (35%), Gaps = 37/386 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 222 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQQLMADGVAASSFSEL 275

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +AVI+AP   L  Q Y   +K+   T +   ++ G +   H+ + + R  +    ++
Sbjct: 276 QEPEAVIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREISRGCN----VL 331

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L      ++DE  R                    M +    +T
Sbjct: 332 CGTPGRLLDVIGRGKVGLSKVRYFVLDEADRMLDMGFEP--DMRRLVGSPGMPSKENRQT 389

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI ++         +   +  +      +E+  V +++  K   +   ++ 
Sbjct: 390 LMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFVQVTKFSKREQLLDLLKT 449

Query: 495 ------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +           IHG     ++E  +  F++G C +L+AT
Sbjct: 450 TGMERTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVAT 509

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN-SYTR 607
           +V   G+D+ D   ++  +  +     +H++ GR GR       +  + P      + + 
Sbjct: 510 SVAARGLDIPDVQHVVNFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFFDPDSDDQLARSL 568

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEI 633
           +++L   +       ED      G +
Sbjct: 569 VTILSKAQQEVPSWLEDSAFSGPGSM 594


>gi|228933771|ref|ZP_04096617.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825843|gb|EEM71630.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 451

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 26  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 79

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 80  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 135

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 136 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 194

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +         IE+  +  ++  K     ++  + +      F     R
Sbjct: 195 KRYMD-EPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 253

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 254 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 313

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 314 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 360


>gi|317479221|ref|ZP_07938356.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
 gi|316904509|gb|EFV26328.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
          Length = 425

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 119/344 (34%), Gaps = 34/344 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQAVI 326
           +PT  QE +I  +LQ          +     G+GKT    I +   +         +A+I
Sbjct: 23  TPTPIQEKSIPILLQGKD------LLGCAQTGTGKTAAFSIPILQKLYKTDNRKSIKALI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E    Y + T +   +I G + Q  +   L+R       I++ T    
Sbjct: 77  LTPTRELAIQIGECFSAYGKYTGLRHAVIFGGVGQKPQTDELKR----GVQILVATPGRL 132

Query: 387 QDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           QD +         L   ++DE  R      +           +L       +TL  ++  
Sbjct: 133 QDLVNQGFINLKALEFFVLDEADRMLDMGFIHDI------RRILKLLPAKRQTLFFSATM 186

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
             +I  +        P K  + P +   + I +    + + +K   +   ++        
Sbjct: 187 PPEIETLANS-MLTHPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIHLLKNPAIESVL 245

Query: 497 -ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  +   ++              IHG  S   ++  +  FKN   ++LIAT +   GI
Sbjct: 246 IFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRALTGFKNHELRVLIATDIAARGI 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV   S +I     +     +H++ GR GR       +      
Sbjct: 306 DVDQLSHVINYELPNIPETYVHRI-GRTGRAGHDGIALSFCESE 348


>gi|291387348|ref|XP_002710262.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Oryctolagus
           cuniculus]
          Length = 1030

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 373 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 426

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 427 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 486

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 487 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 542

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 543 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 595

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 596 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 655

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 656 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 714

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 715 KGYAYTFITEDQARYAGDIIKALE 738


>gi|270016295|gb|EFA12741.1| Rm62 [Tribolium castaneum]
          Length = 776

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 150/440 (34%), Gaps = 54/440 (12%)

Query: 213 RKAKDFEWTSPARERL-----AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR 267
           +   D +   P ++       A       ++      K+   +   P  ++         
Sbjct: 77  KPNWDMKNLRPFKKDFYVPHPAVANRSKYEVEQYRRSKEITIDGDAPNPIQNFEEACFPD 136

Query: 268 NIPFS--------PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
            +           PT  Q       +        ++ I Q   GSGKTL  ++     + 
Sbjct: 137 YVQHEIQKQGYDTPTAIQAQGWPIAM----SGKDLVGIAQ--TGSGKTLAYILPAIVHIN 190

Query: 320 A--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G  A+++AP   LAQQ  +    +  ++ +    I G  P+  + + LER 
Sbjct: 191 NQPSIARGDGPIALVLAPTRELAQQIQQVAHDFGSSSYVRNTCIFGGAPKGPQARDLER- 249

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAP 421
                 I I T     D ++           L+L   D     G   Q R  + Q     
Sbjct: 250 ---GVEICIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 306

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRKPIKTV-IIPINRIDEVIERLK 476
             L+ +AT       L      +  +I     +  A    ++ V +   +  +  +  L 
Sbjct: 307 QTLMWSATWPKEVRKLAQDFLRNYVQINIGSLQLSANHNILQIVDVCQEHEKETKLNNLL 366

Query: 477 VVL-SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             + + G+    I   +E KK+       E        +      +HG  S  +++ V+ 
Sbjct: 367 QEIGNNGEPGAKIIIFVETKKKV------ESITRTIRRYGWPAVCMHGDKSQQERDFVLR 420

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F+NG   +LIAT V   G+DV     +I  +  +     +H++ GR GR +   +    
Sbjct: 421 EFRNGKSSILIATDVAARGLDVEGIKYVINYDYPNSSEDYIHRI-GRTGRSDTTGTSYAF 479

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   + +   +SVLK   
Sbjct: 480 FTPSNFRQAKDLVSVLKEAN 499


>gi|260790063|ref|XP_002590063.1| hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae]
 gi|229275251|gb|EEN46074.1| hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae]
          Length = 403

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 134/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G GKT    I++   ++      QA++++
Sbjct: 52  KPSAIQQRAIKPIVKGRDV------IAQAQSGVGKTATFSISILQCLDIQMREVQALVLS 105

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        +      G        + L+       H++ GT     D
Sbjct: 106 PTRELATQIQKVILALGDYMSVQCHSCIGGTNVGEDIRKLDYGQ----HVVSGTPGRVFD 161

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 162 MIRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLSATLPHEILEMT 221

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 222 TKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 274

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   +++++M  F++G  ++LI T V   GID
Sbjct: 275 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGASRVLITTDVWARGID 334

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 335 VPQVSLIINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQID 393

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 394 EMPMNVADL 402


>gi|87310130|ref|ZP_01092262.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
 gi|87287120|gb|EAQ79022.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
          Length = 428

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 139/376 (36%), Gaps = 29/376 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-----QAVI 326
            P+  Q + I   L+          + Q   G+GKT    I +   +E G      QA+I
Sbjct: 26  QPSPIQAAIIPLALEGRDV------LGQARTGTGKTAAFGIPIIERLEHGPNSRNPQALI 79

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  + I K T   +I V  + G  P   + + L+R      HI++GT    
Sbjct: 80  LTPTRELAVQVRDEIAKLTHGQRINVVAVYGGKPLRSQMEKLKRA----PHIVVGTPGRV 135

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            D +    L L ++         + L +  +     +L        +TL+L++     I 
Sbjct: 136 IDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRR-CPEERQTLLLSATVPPTIE 194

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNF 500
           K+ ++   R P K    P N   E IE+    +   KK   +   ++ ++          
Sbjct: 195 KLAQRYM-RNPEKVDFSPTNISAETIEQRYFTVDHSKKFDMLVELLKREQPQKAIVFCRT 253

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           +   ER        T  +  IHG M    +   +  FK    ++L+AT V+  GID+ D 
Sbjct: 254 KRGTERITQRLSKKTKLVHCIHGDMQQGARNRALSDFKASKFRVLVATDVVGRGIDISDV 313

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK-----NSYTRLSVLKNTE 615
           S II  +   F    +H++ GR GR  +         P                ++++  
Sbjct: 314 SHIINYDIPEFSDDYVHRV-GRTGRMGKEGIAYTFVTPEEGNELTRIEVRIDKLLIRDEL 372

Query: 616 DGFLIAEEDLKQRKEG 631
            GF   E        G
Sbjct: 373 PGFAPYERTDVDTGPG 388


>gi|297595326|gb|ADI48178.1| vasa [Crepidula fornicata]
          Length = 502

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 131/349 (37%), Gaps = 37/349 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAG--------- 321
            PT  Q+ AI  IL           +     GSGKT   ++ +  A V+ G         
Sbjct: 79  KPTPIQKHAIPSILAGRD------LMGCAQTGSGKTAAFILPVLTAMVKEGLTCSPMSEF 132

Query: 322 --GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q +++AP   LA Q Y   +K+   T +   ++ G +  AH+ + +E      A+++
Sbjct: 133 QEPQTIVVAPTRELASQIYTEARKFALRTDVRPVVVYGGVSVAHQLRQVES----GANLV 188

Query: 380 IGTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           +GT     D I+       K+  +I+DE  R                  L M +    +T
Sbjct: 189 VGTPGRLLDFIERGKISVKKVKFLILDEADRMLDMGFEPSI--RKLVESLGMPSKSERQT 246

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    +I ++           TV I      +V E+  + +   +K  ++C  +  
Sbjct: 247 LMFSATFKAEIQQLAADFMNDYLFITVGIVGGACSDV-EQTFLEVDRLQKREYLCDILNS 305

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +        +   +   S           IHG     ++E  +  FK G   +LIAT
Sbjct: 306 SGTNRVLVFVGQKRNADFLASFLSQSGYPTTSIHGDRLQREREEALMDFKRGKSPVLIAT 365

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            V   G+D+ D + ++  +        +H++ GR GR   +      Y 
Sbjct: 366 NVAARGLDIPDVTHVVNYDLPTDIDEYVHRI-GRTGRCGNLGKATSFYS 413


>gi|229522888|ref|ZP_04412302.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80]
 gi|229340105|gb|EEO05113.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80]
          Length = 464

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 128/344 (37%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A I++ T  
Sbjct: 77  LILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ---RMCKG-ADILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRK-------ILKLLPEKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                  +   K     P++  + P N     +E+        KK   +   ++E     
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVMNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|229030176|ref|ZP_04186236.1| ATP-dependent RNA helicase [Bacillus cereus AH1271]
 gi|228731134|gb|EEL82056.1| ATP-dependent RNA helicase [Bacillus cereus AH1271]
          Length = 446

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 132/348 (37%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEQAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PDSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +         IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGIAITFVAAKDEKHLEEIEKTL 363


>gi|227495476|ref|ZP_03925792.1| superfamily II helicase [Actinomyces coleocanis DSM 15436]
 gi|226831023|gb|EEH63406.1| superfamily II helicase [Actinomyces coleocanis DSM 15436]
          Length = 616

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 134/357 (37%), Gaps = 37/357 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +PT  QE AI  +L+          +     G+GKT    + M A ++ G    QA+++A
Sbjct: 27  TPTPIQEQAIPHLLEGRD------IVGIAQTGTGKTAAFGLPMLAHIDPGFNAVQAIVLA 80

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    I+ +  +   + V  + G      + K L+      A +++GT     
Sbjct: 81  PTRELAMQSATAIESFAAHMPKVKVVTVYGGASYTPQIKGLKS----GAQVVVGTPGRVI 136

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D I+   L L  V        DE  R G  + ++    +       +TA       + ++
Sbjct: 137 DLIEKGALKLNNVSVLVLDEADEMLRMGFAEDVETIAASMPESGKRITA-------LFSA 189

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                I ++ ++     P++  +   +   E I +   V+    K   +   +  + E  
Sbjct: 190 TMPDFIQRVADQHLT-DPVRIEVARQSSTVENIHQTYAVVPFKHKLGALGRVLATRDEDA 248

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R   +           + A I G +S  ++E ++   ++G+  +L+AT V   
Sbjct: 249 AIVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLRDGSLDVLVATDVAAR 308

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           G+DV    ++I  +      A +H++ GR GR       +  + P           +
Sbjct: 309 GLDVERIGLVINFDVPRETEAYVHRV-GRTGRAGRAGRSLTFFTPKEQFRLRQIEKL 364


>gi|189205421|ref|XP_001939045.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187975138|gb|EDU41764.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 690

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 86/410 (20%), Positives = 150/410 (36%), Gaps = 60/410 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
            PT  Q +AI   LQ          I     GSGKT   L+ + A +             
Sbjct: 291 EPTPIQRAAIPIALQCRD------LIGVAKTGSGKTAAFLLPLLAYISQLPPLDAINRHD 344

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+I+AP   LAQQ  E  +K+         ++ G      +   +       A III
Sbjct: 345 GPYALILAPTRELAQQIEEEARKFATPLGFRTAVLVGGHSIEEQSFQMRD----GAEIII 400

Query: 381 GTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLT-----------QKATAP 421
            T     D I+   L+L           D     G ++ +                  A 
Sbjct: 401 ATPGRLNDCIERRVLVLSQCTYVIMDEADRMIDMGFEEPVNKILAALPVNNEKPDTEEAE 460

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
               M      +T++ T+     + +I ++ + R  I T I  +    + +E+    +  
Sbjct: 461 DADAMKRGLYRQTMMYTATMPPALERIAKQYSRRPAIVT-IGNLGEATDTVEQRVEFIQG 519

Query: 482 GKKAYWICPQIEEKKES--------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            +K      +I    E         N +   +      +H   S A +HG  +   +E+ 
Sbjct: 520 EEKRKKRLQEILTSGEFAPPIIVFVNIKRNCDAIARDIKHMGFSSATMHGSKTQEQREAA 579

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           + + K+G   +L+AT +   GID+ D S+++  N      A  H++ GR GR ++  + I
Sbjct: 580 LAALKSGQTNVLVATDLAGRGIDIPDVSLVVNFNMPSSIEAYTHRI-GRTGRQDKKGTAI 638

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ--------RKEGEILG 635
             +    +   Y    +L  T+       EDL++        +K GE++G
Sbjct: 639 TFWGNEDADVLYDLKQIL--TKSNLSKVPEDLRKHEAAQQKGKKRGEVMG 686


>gi|148239847|ref|YP_001225234.1| superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
 gi|147848386|emb|CAK23937.1| Superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
          Length = 606

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 132/343 (38%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q++A  +++           + Q   G+GKT    + +   ++      + +++A
Sbjct: 79  EPSPIQKAAFPELMLGRD------LVGQAQTGTGKTAAFALPLLERLDGRSNTPRVLVLA 132

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  K Y   +  + V  I G      +  AL+R       +++GT     
Sbjct: 133 PTRELAMQVADSFKAYAAGHPHLNVLAIYGGSDFRSQIHALKR----GVDVVVGTPGRVM 188

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVL 437
           D ++           L+L   DE  R G    ++    Q      V+L +AT       L
Sbjct: 189 DHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVVLFSATMPNEIRRL 248

Query: 438 TSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           +     + ++IT   K    K I+   I +    ++    +V+ +   +   I  +    
Sbjct: 249 SKRYLREPAEITIKTKDREAKRIRQRSITLQNAHKIEALNRVLEAVTGEGVIIFART--- 305

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +++        E     +A+++G +    +E  +D  + GT  +L+AT V   G+
Sbjct: 306 -----KAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKGTVNILVATDVAARGL 360

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV    ++I  +      A +H++ GR GR       IL   P
Sbjct: 361 DVDRIGLVINYDMPFDSEAYVHRI-GRTGRAGRTGEAILFVTP 402


>gi|15608393|ref|NP_215769.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis H37Rv]
 gi|15840699|ref|NP_335736.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|148661040|ref|YP_001282563.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra]
 gi|148822470|ref|YP_001287224.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis F11]
 gi|215403092|ref|ZP_03415273.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis 02_1987]
 gi|215410888|ref|ZP_03419696.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215445431|ref|ZP_03432183.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis T85]
 gi|218752952|ref|ZP_03531748.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|253799702|ref|YP_003032703.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           1435]
 gi|254231510|ref|ZP_04924837.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis C]
 gi|254550260|ref|ZP_05140707.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289554958|ref|ZP_06444168.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           605]
 gi|289744998|ref|ZP_06504376.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           02_1987]
 gi|289757351|ref|ZP_06516729.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis T85]
 gi|289761405|ref|ZP_06520783.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|297633802|ref|ZP_06951582.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           4207]
 gi|297730788|ref|ZP_06959906.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           R506]
 gi|298524756|ref|ZP_07012165.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306775422|ref|ZP_07413759.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu001]
 gi|306781666|ref|ZP_07420003.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu002]
 gi|306788337|ref|ZP_07426659.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu004]
 gi|306792663|ref|ZP_07430965.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu005]
 gi|306797070|ref|ZP_07435372.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu006]
 gi|306802950|ref|ZP_07439618.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu008]
 gi|306807140|ref|ZP_07443808.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu007]
 gi|306967339|ref|ZP_07480000.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu009]
 gi|306971531|ref|ZP_07484192.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu010]
 gi|307079244|ref|ZP_07488414.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu011]
 gi|307083813|ref|ZP_07492926.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu012]
 gi|313658120|ref|ZP_07815000.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           V2475]
 gi|1706338|sp|Q11039|DEAD_MYCTU RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|1480333|emb|CAB00899.1| PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent
           RNA helicase deaD homolog) [Mycobacterium tuberculosis
           H37Rv]
 gi|13880887|gb|AAK45550.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|124600569|gb|EAY59579.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis C]
 gi|148505192|gb|ABQ73001.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra]
 gi|148720997|gb|ABR05622.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis F11]
 gi|253321205|gb|ACT25808.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           1435]
 gi|289439590|gb|EFD22083.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           605]
 gi|289685526|gb|EFD53014.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           02_1987]
 gi|289708911|gb|EFD72927.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|289712915|gb|EFD76927.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis T85]
 gi|298494550|gb|EFI29844.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216042|gb|EFO75441.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu001]
 gi|308325627|gb|EFP14478.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu002]
 gi|308335025|gb|EFP23876.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu004]
 gi|308338833|gb|EFP27684.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu005]
 gi|308342518|gb|EFP31369.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu006]
 gi|308346383|gb|EFP35234.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu007]
 gi|308350324|gb|EFP39175.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu008]
 gi|308354954|gb|EFP43805.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu009]
 gi|308358901|gb|EFP47752.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu010]
 gi|308362864|gb|EFP51715.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu011]
 gi|308366530|gb|EFP55381.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu012]
 gi|323720210|gb|EGB29309.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902876|gb|EGE49809.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           W-148]
 gi|328459448|gb|AEB04871.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           4207]
          Length = 563

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/359 (21%), Positives = 131/359 (36%), Gaps = 37/359 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SPT  Q + I  ++           +     G+GKT    I M + ++      QA+++ 
Sbjct: 35  SPTAIQAATIPALMAG------SDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLV 88

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y    +Q+ V  I G    A +   L R     A +++GT     
Sbjct: 89  PTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR----GAQVVVGTPGRMI 144

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTL 435
           D ++   L        +L   DE    G    +   L++      V L +AT  P  R L
Sbjct: 145 DHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKL 204

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D        K A  + I    I + R  + +   +V+  E  +A  +  +    
Sbjct: 205 SAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDAL--TRVLEVEPFEAMIVFVRT--- 259

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E           S A I G +    +E  + + ++G   +L+AT V   G+
Sbjct: 260 -----KQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGL 314

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           DV   S ++  +  H   + +H++ GR GR     + ++   P             + T
Sbjct: 315 DVERISHVLNYDIPHDTESYVHRI-GRTGRAGRSGAALIFVSPRELHLLKAIEKATRQT 372


>gi|224010271|ref|XP_002294093.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220970110|gb|EED88448.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 471

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 135/366 (36%), Gaps = 39/366 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L+       M+ I     GSGKTL  L+     + A        G  
Sbjct: 91  KPTPIQSQGWPMALKG----KNMVGI--SATGSGKTLAFLLPAMIHINAQQYLKPGEGPI 144

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  E   K+  +++I   ++ G +P++ + ++L         I+I T 
Sbjct: 145 VLVLAPTRELAVQIKEECDKFGASSEIKNTVVYGGVPKSKQVRSLRE----GVEIVIATP 200

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G + +L+    Q      VL+ +AT    
Sbjct: 201 GRLIDHLEQGNTNLKRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQVLMWSATWPKE 260

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICP 490
            + L    L D     +           T +I +    +    L   L E       +  
Sbjct: 261 VQNLARDYLSDFYQVTVGSLDLAGNKDVTQMIDVCSDQDKYRNLLRYLRENLTSKDRVLV 320

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +E KK  +  +   R +            +HG  S  +++ V+  FK+    LL+AT V
Sbjct: 321 FVETKKGCDMLTRSLRMDGFQAR------AMHGDKSQEERDWVLREFKSCQATLLVATDV 374

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPLSKNSYTRLS 609
              G+DV D  +++  +  +     +H++ GR GR  +    +         + +   + 
Sbjct: 375 AARGLDVDDIKMVVNFDFPNDTETYIHRI-GRTGRAGKKGFAVSFFVTEKNGRMARDIIE 433

Query: 610 VLKNTE 615
           +L  T+
Sbjct: 434 ILNRTQ 439


>gi|254487565|ref|ZP_05100770.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
 gi|214044434|gb|EEB85072.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
          Length = 533

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 136/368 (36%), Gaps = 46/368 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+          +     G+GKT    + M   +  G       +++
Sbjct: 24  TPTPIQAGAIPPALEGKDV------LGIAQTGTGKTASFTLPMITMLARGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    YT++  +   ++ G +    + K +++       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYTKHLNLTKALLIGGVSFGEQDKLIDK----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KLIL     ++VDE  R      +   ++       +   TP   +TL  ++
Sbjct: 134 LIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIER-------IFQMTPFTRQTLFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER---------LKVVLSEGKKAYWICP 490
               +I +IT       P++  +       E IE+              +E +K      
Sbjct: 187 TMAPEIERITNTFL-SNPVRIEVARQATTGENIEQGVLMFKASRKDREATEKRKVLRALI 245

Query: 491 QIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             E  K        N +  V+      + +    A IHG +    +   ++ F+NG  + 
Sbjct: 246 DAEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNGDLRF 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+A+ V   G+DV   S +   +        +H++ GR GR       I++  P   KN 
Sbjct: 306 LVASDVAARGLDVPSVSHVYNFDVPSHAEDYVHRI-GRTGRAGRDGKAIMICVPRDEKNL 364

Query: 605 YTRLSVLK 612
                +++
Sbjct: 365 EDVERLVQ 372


>gi|207344698|gb|EDZ71756.1| YHR065Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 496

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 132/348 (37%), Gaps = 33/348 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
            +N+ +S PT  Q  AI   L+          I     GSGKT    I +   +   +  
Sbjct: 138 CKNLNYSKPTPIQSKAIPPALEGHD------IIGLAQTGSGKTAAFAIPILNRLWHDQEP 191

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A I+AP   LAQQ  E          +    I G M    + + L R    + HIII 
Sbjct: 192 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR----KPHIIIA 247

Query: 382 THALFQDSIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           T     D ++        KL  +++DE  R      L +        +L +  T    T 
Sbjct: 248 TPGRLMDHLENTKGFSLRKLKFLVMDEADRL-----LDMEFGPVLDRILKIIPTQERTTY 302

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I K+ ++ +   P+K  +    +  + + +  +V+  G K  ++   + E 
Sbjct: 303 LFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEF 361

Query: 496 KESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      ++  ER + L      S   +HG ++   +   +D FK G   +L+AT 
Sbjct: 362 IGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATD 421

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   G+D+    I++  +      + +H++ GR  R       I L  
Sbjct: 422 VAARGLDIPSVDIVVNYDIPVDSKSYIHRV-GRTARAGRSGKSISLVS 468


>gi|154271069|ref|XP_001536388.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1]
 gi|160380608|sp|A6RGE3|DBP2_AJECN RecName: Full=ATP-dependent RNA helicase DBP2
 gi|150409611|gb|EDN05055.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1]
          Length = 542

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/367 (19%), Positives = 136/367 (37%), Gaps = 42/367 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q       L           +   + GSGKTL   +     + A        G   
Sbjct: 148 PTAIQAQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIV 201

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T  
Sbjct: 202 LVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDLTR----GVEVCIATPG 257

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP-- 432
              D ++  K        L+L   D     G + +++    Q        + +AT     
Sbjct: 258 RLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMWSATWPKDV 317

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIP----INRIDEVIERLKVVLSEGKKAYWI 488
           R L    L D     I           T I+       + D + + L  ++   K +  +
Sbjct: 318 RQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHLDRIMEANKHSKVL 377

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       R   +    L +    +++I HG     +++ V++ FK G   +++AT
Sbjct: 378 IFT------GTKRVADDITRFLRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVAT 430

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV D + ++  +  +     +H++ GR GR     + I L+    +K +   +
Sbjct: 431 DVASRGIDVRDITHVLNYDYPNNSEDYVHRI-GRTGRAGAKGTAITLFTTDNAKQARDLV 489

Query: 609 SVLKNTE 615
           ++L  ++
Sbjct: 490 AILSESK 496


>gi|331217131|ref|XP_003321244.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300234|gb|EFP76825.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 547

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/366 (20%), Positives = 135/366 (36%), Gaps = 44/366 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +P+  Q  A    L           +     GSGKT+   I     + A        G  
Sbjct: 135 APSPIQCQAWPMALSGRDV------VAVSATGSGKTIAFSIPAMIHINAQPLLAPGDGPI 188

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA Q      K+  +++I    + G +P+  + + L R     A I+I T 
Sbjct: 189 VLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQIRDLTR----GAEIVIATP 244

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D ++  K        L++   D     G + ++K    Q       L+ +AT    
Sbjct: 245 GRLIDMLESRKTNLHRVTYLVMDEADRMLDMGFEPQIKKIVEQIRPDRQTLMFSATWPKE 304

Query: 434 TLVLTSLGDIDISKIT------EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              L S    D  ++               I  V     +  ++I+ L+ + SE  K   
Sbjct: 305 VQRLASEYLKDFIQVNVGSLDLTANINITQIVEVCSDFEKRGKLIKHLEKISSESAKVLI 364

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        R   +    L +    S+AI HG     +++ V++ FK+G   ++IA
Sbjct: 365 FV--------GTKRVADDLTKYLRQDGWPSLAI-HGDKQQQERDWVLEEFKSGRSPIMIA 415

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D + +I  +  +     +H++ GR GR     +         SK +   
Sbjct: 416 TDVASRGLDVKDIAYVINYDMPNGIEDYIHRI-GRTGRAGRTGTAYSYISADQSKLAKEL 474

Query: 608 LSVLKN 613
           + +L++
Sbjct: 475 VKILRD 480


>gi|269217166|ref|ZP_06161020.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
           700122]
 gi|269129303|gb|EEZ60388.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
           700122]
          Length = 721

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 128/378 (33%), Gaps = 38/378 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQAVI 326
            PT  QE AI  +L+          I     G+GKT    +     +     + G   VI
Sbjct: 46  EPTPVQEKAIPVVLEGRD------LIAAAKTGTGKTAAFSLPTLDQLRYRADDEGPLMVI 99

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LAQQ  +      + T     ++ G +    + K L       A III T    
Sbjct: 100 VTPTRELAQQIADTCAPIARRTNHSTVVLLGGVGYGPQIKKLRA----GADIIIATPGRL 155

Query: 387 QDSIQYY--------KLILVIVDEQHRFGVQQR--LKLTQKATAPHVLLMTATPIPRT-- 434
            D ++          KL+L   D     G   +    +         LL +AT       
Sbjct: 156 LDLMRQGAADLGNVEKLVLDEADRMLDMGFWPQVSEIVDAIPAERQTLLFSATIDRSQDK 215

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ + L D +I +I  +      I   +I  +R  +       V   G     +  +   
Sbjct: 216 VMFSLLKDPEIIEIAHRGDVADLIDQYVIKTDRRLKPALLNSFVRERGGFRVIVFTRT-- 273

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +   +           +   IH   S   +   +D+F+ G   +L+AT V+  G
Sbjct: 274 ------KGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFREGKTHVLVATDVLSRG 327

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV +   +I  +        +H++ GR GR       +    P       +    +  T
Sbjct: 328 IDVPEVDYVINYDLPMMPEDYVHRI-GRTGRAGARGYAVSFVTPDTRNLLKSIQKFIDQT 386

Query: 615 ED--GFLIAEEDLKQRKE 630
            +   F ++++ ++   E
Sbjct: 387 IEVLDFAVSDDAMEPVGE 404


>gi|195109284|ref|XP_001999217.1| GI23184 [Drosophila mojavensis]
 gi|193915811|gb|EDW14678.1| GI23184 [Drosophila mojavensis]
          Length = 724

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 134/378 (35%), Gaps = 41/378 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       +           +     GSGKTL  ++     +          G  
Sbjct: 298 APTPIQAQGWPIAMSG------ANFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPI 351

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  ++ +    + G  P+  + + L+R       I+I T 
Sbjct: 352 ALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE----IVIATP 407

Query: 384 ALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D +        +   +++DE  R          +K  +         P  +TL+ +
Sbjct: 408 GRLIDFLSAGATNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR------PDRQTLMWS 461

Query: 439 SLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    ++ ++ E   G      +    +   + I +V++       E K    +    + 
Sbjct: 462 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEDKLKSLLSDIYDT 521

Query: 495 KKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           +  V+        F      IHG  S  +++ V+  F++G   +L+A
Sbjct: 522 SENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 581

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV     +I  +        +H++ GR GR     +    +    +K +   
Sbjct: 582 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRI-GRTGRSNTKGTSFAFFTKNNAKQAKAL 640

Query: 608 LSVLKNTEDGFLIAEEDL 625
           + VL+        A E++
Sbjct: 641 VDVLREANQEINPALENM 658


>gi|120564784|gb|ABM30181.1| VASA3n [Paragonimus westermani]
          Length = 606

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 136/373 (36%), Gaps = 44/373 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAG---------- 321
           PT  Q+ AI  I  +         +     GSGKT   LI +    +E G          
Sbjct: 154 PTPVQKHAIPIIASNRD------LMACAQTGSGKTAAFLIPILNRMIEEGPGDSLIATME 207

Query: 322 ----GQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                Q   A+I+AP   LA Q +E  +K+   ++I   ++ G    A  R  L  ++ G
Sbjct: 208 TNRRKQFPVALILAPTRELASQIFEDARKFAYRSRIRPCVLYGG---ADMRAQLIEVSKG 264

Query: 375 QAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             ++++ T     D+I+  ++ L       +DE  R          ++      L  +  
Sbjct: 265 -CNLLVATPGRLTDAIERGRIGLDHCRFLILDEADRMLDMGFEPQIRRIVEQDNLPPS-- 321

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              +TL+ ++    +I  +  K    + I   +  +    E I +    + E KK   + 
Sbjct: 322 GKRQTLMFSATFPHEIQMLA-KDFLSRYIFLAVGRVGSTSENITQSISWVEEDKKRDALV 380

Query: 490 PQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +               +   +            +A IHG  +  D+E  +  F+NG  
Sbjct: 381 DLLSSSDPGVLTLVFVETKRGADSLEDYLFSQKFHVASIHGDRTQDDRELALPCFRNGRT 440

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++     
Sbjct: 441 PILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRI-GRTGRVGNLGIATSFFNDKNRN 499

Query: 603 NSYTRLSVLKNTE 615
            +   + +L+   
Sbjct: 500 LARGLVELLEEVN 512


>gi|300121126|emb|CBK21507.2| unnamed protein product [Blastocystis hominis]
          Length = 518

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 136/375 (36%), Gaps = 43/375 (11%)

Query: 273 PTKSQES--AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------- 322
           PT  Q+   AI  I +D+        +     GSGKT   L  +  ++   G        
Sbjct: 159 PTPVQKYGLAIGCIGRDL--------MACAQTGSGKTAGFLFPIIISMLRNGPSKAPLPD 210

Query: 323 --------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                     +I++P   LA Q Y+  +++   T I   ++ G  P      +L      
Sbjct: 211 DYGDRYFPTCLILSPTRELALQIYQESQRFCYCTGIASAVVYGGTPMREVLDSLRS---- 266

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I++GT    +D IQ   L L  +         + L +  +     ++  +  P  R 
Sbjct: 267 GCDILVGTPGRVKDMIQRGILGLEGITHLVLDEADRMLDMGFEPQIRDIVEQSGMPRNRQ 326

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI---DEVIERLKVVLSEGKKAYWICPQ 491
            ++ S    D     ++ AG   I  V + + R+    + IE+  + + +  K  ++  +
Sbjct: 327 TLMFSATFPDEI---QRLAGDFLIDYVFLAVGRVGGAAQDIEQRVIYVEDADKDSYLLHE 383

Query: 492 IEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +E             +   +             A IHG  S  D+E  + +FK    ++L
Sbjct: 384 LENWGNGRILIFVETKRKADILQRYLTTQHFQAASIHGDRSQADREDALSAFKLNRVQIL 443

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+D+ D S++I  +        +H++ GR GR       I   +      + 
Sbjct: 444 VATDVAARGLDIPDVSLVINYDTPQNIEDYVHRI-GRTGRAGNTGVAISFINENNRPIAR 502

Query: 606 TRLSVLKNTEDGFLI 620
               +L      F I
Sbjct: 503 DLYDLLDENSPDFWI 517


>gi|262192111|ref|ZP_06050273.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93]
 gi|262032022|gb|EEY50598.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93]
          Length = 464

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 128/344 (37%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A I++ T  
Sbjct: 77  LILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ---RMCKG-ADILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRK-------ILKLLPEKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                  +   K     P++  + P N     +E+        KK   +   ++E     
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|16331758|ref|NP_442486.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803]
 gi|1001719|dbj|BAA10556.1| ATP-dependent RNA helicase; DeaD [Synechocystis sp. PCC 6803]
          Length = 492

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 137/358 (38%), Gaps = 39/358 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   ++L +I F  PT+ Q  AI  +L           + Q   G+GKT    + +   
Sbjct: 15  SEKRCQLLADIGFEAPTQIQTEAIPLLLSGRD------MLAQSQTGTGKTAAFALPLMDR 68

Query: 318 VEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           ++  G  QA+I+ P   LAQQ  E +K ++   ++ +  + G      + ++LER     
Sbjct: 69  IDPEGDLQALILTPTRELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIRSLER----G 124

Query: 376 AHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMT 427
             I++GT     D I   KL L  +        DE    G    +           +L  
Sbjct: 125 VQIVVGTPGRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDV---------KTILRK 175

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T   ++    +I ++  +      + T +         IE+    +  G     
Sbjct: 176 TPPTRQTACFSATMPREIKELVNQFLNDPALVT-VKQTQSTPTRIEQQLYHVPRGWSKAK 234

Query: 488 ICPQIEEKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
               I E ++          +       S  +    S+   HG +S   +E ++  F++G
Sbjct: 235 ALQPILEMEDPESAIIFVRTKQTAADLTSRLQEAGHSVDEYHGNLSQSQRERLVHRFRDG 294

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             KL++AT +   G+DV + S ++  +        +H++ GR GR  +    I L  P
Sbjct: 295 KIKLVVATDIAARGLDVNNLSHVVNFDLPDNAETYIHRI-GRTGRAGKTGKAIALVEP 351


>gi|317052319|ref|YP_004113435.1| DEAD/DEAH box helicase domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316947403|gb|ADU66879.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
           S5]
          Length = 457

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 66/339 (19%), Positives = 126/339 (37%), Gaps = 27/339 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
            PT  Q+ AI  ILQ    +           G+GKT    + M   +E          +A
Sbjct: 23  QPTPVQQQAIPAILQGRDIQ------AGAQTGTGKTAGFTLPMLEILERQAIRGRRHVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E ++ Y ++  +   +I G +    +   L R       I++ T  
Sbjct: 77  LILTPTRELAAQVEESVRTYGKHLSLKSAVIFGGVAMGPQLANLRR----GVDIVVATPG 132

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D +Q   + L  V E        R+           +L       + L+ ++    +
Sbjct: 133 RLLDHVQQKSIDLSKV-EFLVLDEADRMLDMGFIHDIRKVLALLPKERQNLLFSATFSRE 191

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----- 499
           I+++      + P++  +   N   E ++++  ++   +K   +   I E K        
Sbjct: 192 ITELASSFM-KDPVQVEVARRNTAAETVDQVVHLVDRERKRELLSKLISEGKWQQVLVFT 250

Query: 500 -FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +    R     E      A IHG  S   +   +  FK G  ++L+AT +   G+D+ 
Sbjct: 251 RTKHGANRLAQQLEKDGIHSAAIHGNKSQSARTKALADFKKGQVRVLVATDIAARGLDID 310

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEE-ISSCILLY 596
           +   ++     +     +H++ GR GR      +C L+ 
Sbjct: 311 ELPHVVNFELPNVPEDYVHRI-GRTGRAGNCGKACSLVC 348


>gi|261212630|ref|ZP_05926914.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341]
 gi|260837695|gb|EEX64372.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341]
 gi|327485418|gb|AEA79824.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae LMA3894-4]
          Length = 464

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 128/344 (37%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A I++ T  
Sbjct: 77  LILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ---RMCKG-ADILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRK-------ILKLLPEKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                  +   K     P++  + P N     +E+        KK   +   ++E     
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|255534886|ref|YP_003095257.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium
           3519-10]
 gi|255341082|gb|ACU07195.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium
           3519-10]
          Length = 417

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 133/343 (38%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------EAGGQAV 325
            PT  Q  AI  ILQ          +     G+GKT    I +   +          +A+
Sbjct: 23  QPTPIQAKAIPSILQGRD------LLGTAQTGTGKTAAFAIPILQNLTEKNIRNNQIKAL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E    Y ++ ++   ++ G + Q+ +  AL++       I++ T   
Sbjct: 77  ILTPTRELAIQIEESFNAYGRHLRLRNLVVFGGVKQSGQEAALKK----GVDILVATPGR 132

Query: 386 FQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D I         L + ++DE  R      +   +       ++    P  +TL  ++ 
Sbjct: 133 LLDFISQGIISLKNLEIFVLDEADRMLDMGFVHDVK------RIIKLLPPKRQTLFFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA----YWICPQIEEKK 496
              +ISK+        P+K  + P++   + I++    + +  K     + +   I +  
Sbjct: 187 FPDEISKLANS-MLTNPVKVEVAPVSATADTIKQKVYFVEKENKLELLTHILMNDISDSV 245

Query: 497 ESNFRSVV--ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               R+    ++     +    S   IHG  S   +++ +++FK+G  ++L+AT +   G
Sbjct: 246 LVFSRTKHGADKIARKLQSHKISAEAIHGNKSQNQRQNALNNFKSGKTRILVATDIAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ID+ +   ++           +H++ GR GR     S I    
Sbjct: 306 IDIDELKYVVNFELSDVSETYVHRI-GRTGRAGADGSSISFVD 347


>gi|229514699|ref|ZP_04404160.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21]
 gi|229348679|gb|EEO13637.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21]
          Length = 464

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 128/344 (37%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A I++ T  
Sbjct: 77  LILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ---RMCKG-ADILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRK-------ILKLLPEKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                  +   K     P++  + P N     +E+        KK   +   ++E     
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|238498592|ref|XP_002380531.1| DEAD/DEAH box RNA helicase [Aspergillus flavus NRRL3357]
 gi|220693805|gb|EED50150.1| DEAD/DEAH box RNA helicase [Aspergillus flavus NRRL3357]
          Length = 1201

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 143/379 (37%), Gaps = 47/379 (12%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ++  + +S PT  Q  AI  I+           I     GSGKT+  LI M   ++    
Sbjct: 583 VIDRLGYSAPTSIQAQAIPAIMSGRDV------IGVAKTGSGKTIAFLIPMFRHIKDQRP 636

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +IM P   LA Q ++  K + +   +      G  P   +   L+R     
Sbjct: 637 LENMEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKR----G 692

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K      +L  
Sbjct: 693 AEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMK------ILAN 746

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K    KP++ V+   + +   I ++  V SE KK   
Sbjct: 747 VRPDKQTVLFSATFPRNMEALARKTLN-KPVEIVVGGRSVVAPEITQIVEVRSEDKKFIR 805

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  ++L             IHG    ID++S ++
Sbjct: 806 LLELLGNLYSTDENEDARALIFVERQEGADTLLRELMRKGYPCMSIHGGKDQIDRDSTIE 865

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    +++  +A +     +H+  GR GR     + +  
Sbjct: 866 DFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 924

Query: 596 YHPPLSKNSYTRLSVLKNT 614
                 + S      LK +
Sbjct: 925 LTEDQERYSVDIAKALKQS 943


>gi|158333359|ref|YP_001514531.1| DEAD/DEAH box RNA helicase [Acaryochloris marina MBIC11017]
 gi|158303600|gb|ABW25217.1| DEAD/DEAH box RNA helicase [Acaryochloris marina MBIC11017]
          Length = 574

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/435 (18%), Positives = 157/435 (36%), Gaps = 52/435 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SP+  Q  +I  +L           + Q   G+GKT    + + + ++   A  Q +++A
Sbjct: 29  SPSPIQAQSIPPLLAGRD------LLGQAQTGTGKTAAFALPLLSQLDLSQAHPQILVLA 82

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E ++ Y ++     +  + G    + + + L R      H+++GT     
Sbjct: 83  PTRELAIQVAEAMQTYARHLPGFHIATLYGGQNISTQLRQLRR----GVHVVVGTPGRLI 138

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRTL 435
           D +    L L  +        DE  R G  + +   L +      V L +AT     R +
Sbjct: 139 DHLLRGTLKLENLSTVVLDEADEMLRMGFIEDVEKILDETPKGRQVALFSATMPSAIRRV 198

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D    KI  K A    +      +  + ++    +++  E  +A  +  +    
Sbjct: 199 AQRHLNDPVEIKIKSKTATVSTVTQRYWQVRGLSKLDALTRILEVEDFEAMLVFVRT--- 255

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                + +        E    S A++ G +S   +E  ++  K G   +++AT V   G+
Sbjct: 256 -----KVMAAELAEKLEARGYSSAVLSGDISQPLREKTIERIKAGRLDIIVATDVAARGL 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S +I  +  +     +H++ GR GR       IL       +   +     +   
Sbjct: 311 DVERISHVINYDIPYDTETYVHRI-GRTGRAGRQGDAILFVSSREKRMLRSIEQATRQPI 369

Query: 616 DGFLIAEE-DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL------------EIARKD 662
               I    D+  R+   I+  KQ           +  + L+            EIA   
Sbjct: 370 QPMQIPSHADIADRR---IVQFKQVITDTIEDQDLDFFEDLISNYQQEQDLSLREIAASL 426

Query: 663 AKHILTQDPDLTSVR 677
           A +++ +D  L   +
Sbjct: 427 A-YLVQKDKPLVPPK 440


>gi|328676775|gb|AEB27645.1| Cold-shock DEAD-box protein A [Francisella cf. novicida Fx1]
          Length = 569

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 149/381 (39%), Gaps = 43/381 (11%)

Query: 269 IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----AGG 322
           + +  PT  Q+ AI  IL           + Q   G+GKT    + +   ++        
Sbjct: 25  LGYENPTPIQQYAIPYILSGRDV------LGQAQTGTGKTAAFALPLINNIDLKSRDRAP 78

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E  + + +N   + V  I G      + +AL++       +++G
Sbjct: 79  QVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQ----GVKVVVG 134

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I+           L+L   DE  R G    +K          +L   +   +
Sbjct: 135 TTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKF---------VLSHVSDECQ 185

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ I E+   R P K  +    +    + +  +V+   +K   +   +E
Sbjct: 186 RLLFSATIPTDIADIIEEYL-RNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLE 244

Query: 494 EKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            ++          ++         +     +A I+G M    +E ++D F++    +L+A
Sbjct: 245 TEETDGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVA 304

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V+  GID+   S +I  +  +     +H++ GR GR     + I L      +   T 
Sbjct: 305 TDVVARGIDLERISHVINYDMPNDTDTYVHRI-GRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 608 LSVLKN-TEDGFLIAEEDLKQ 627
                +  ++ F+ + +DL Q
Sbjct: 364 ERFTGSPMQEVFMPSAKDLAQ 384


>gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
 gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
          Length = 493

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/363 (20%), Positives = 135/363 (37%), Gaps = 42/363 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-----------G 321
           PT  Q  AI  +++          +     G+GKT    + +   +              
Sbjct: 40  PTPIQAQAIPVVVEGRDV------MGAAQTGTGKTAAFTVPILHRLMPLANASASPARHP 93

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q +E +K+Y++ T +   ++ G +    +++AL R       I++ 
Sbjct: 94  VRALILTPTRELADQVFESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRGCE----ILVA 149

Query: 382 THALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT-- 429
           T     D ++   + L  V     DE  R      L   ++           LL +AT  
Sbjct: 150 TPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATFS 209

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              R L  + L      ++  + A    I  +   ++   +    + +V S G K   + 
Sbjct: 210 NEIRKLGRSYLNQPVEIEVAARNATATTITQIAYKMSSDAKRAAVVHLVKSRGLKQVIVF 269

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   SN +    R     E        IHG  +  D+   +++FK G  ++L+AT 
Sbjct: 270 --------SNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGDLEVLVATD 321

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV     +I  +  +     +H++ GR GR       I L+ P   +       
Sbjct: 322 VAARGLDVAGVPCVINYDLPYNAEDYVHRI-GRTGRAGASGEAIALFTPDEERFLLDIEK 380

Query: 610 VLK 612
           ++K
Sbjct: 381 LIK 383


>gi|269795126|ref|YP_003314581.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269097311|gb|ACZ21747.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
          Length = 614

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 77/365 (21%), Positives = 138/365 (37%), Gaps = 40/365 (10%)

Query: 268 NIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQ 323
           ++ F+ P+  QE AI  +L      N +  + Q   G+GKT    + M AAV+      Q
Sbjct: 47  DLGFTVPSTIQEKAIPALLAG----NDITGVAQ--TGTGKTAAFGLPMLAAVDPELRRTQ 100

Query: 324 AVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           A+++AP   LA Q  E I+ + ++   I V  + G  P   + +AL R     A I++GT
Sbjct: 101 ALVLAPTRELAMQVAEAIETFAKHLPGIEVVPVYGGSPYPPQARALSR----GAQIVVGT 156

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D ++   L L  +        DE  R G  + ++              A P  R 
Sbjct: 157 PGRVIDHLERGTLKLGDIRFLVLDEADEMLRMGFAEDVEKI----------FGAAPTERQ 206

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + L S       +   +   R+P++  +   +     + +   V+    K   +   +  
Sbjct: 207 VALFSATMPPQIRRVAQHHMRQPVEIAVSRQSSTVTSVTQQYAVVPFRHKVGSLTRVLAT 266

Query: 495 KKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       R   E   S       S A I G ++  D+E +++  + G   +L+AT
Sbjct: 267 SDADAAIVFCRTRGAAEEVGSALIERGISAATISGDVAQKDREKIVERLRAGALDVLVAT 326

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV    +++  +      A +H++ GR GR       +    P          
Sbjct: 327 DVAARGLDVDRIGLVVNFDIPGEPEAYVHRI-GRTGRAGRTGVALSFVTPNERGRLKQIE 385

Query: 609 SVLKN 613
             ++ 
Sbjct: 386 RTIRQ 390


>gi|229087937|ref|ZP_04220048.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-44]
 gi|228695405|gb|EEL48279.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-44]
          Length = 481

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 141/371 (38%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L ++ +  PT+ Q   I   L+      R   +++   GSGKT    I +   VE     
Sbjct: 19  LTSLKYEQPTEVQGKVIPIALE------RKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E I    +  +I    I G  P A ++  L++    + HI++G
Sbjct: 73  PQALILTPTRELAAQVKEDITNIGRFKRIKATAIYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+           L++   DE    G   ++   + +  T    +L +AT  
Sbjct: 129 TPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTMLFSATLP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +IT        I+  I+ +   ++      +   E   +  I 
Sbjct: 189 EDVENLSRTYMESPINIEITASGITTDKIEHRILEVREEEKFSLLKDITTVESPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  FR          +  +     +HG M   D+ +VM+ FK G  + L+AT 
Sbjct: 249 CRTQENVDHVFRQ--------LKRSSYPCDKLHGGMIQEDRFAVMNDFKRGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P   +       
Sbjct: 301 VAARGIDIENITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYEERFLAEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|242008404|ref|XP_002424996.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212508625|gb|EEB12258.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 684

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 132/363 (36%), Gaps = 57/363 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGGQ------- 323
            PT  Q+ AI  I   MS+++ M        GSGKT   L+ +     + G Q       
Sbjct: 263 KPTPVQKYAIPII---MSRRDLM---ACAQTGSGKTAAFLVPILNQMYQRGPQNNRPYSH 316

Query: 324 ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                  +++AP   LA Q Y+  +K++  +++   ++ G      + + LE+      H
Sbjct: 317 RKQYPMGLVLAPTRELATQIYDEARKFSYRSRLRPCVVYGGSYLQDQFRELEK----GCH 372

Query: 378 IIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +++ T     D +   K+ L       +DE  R          ++        M  T   
Sbjct: 373 LLVATPGRLADMLDRDKIGLENCKFLVLDEADRMLDMGFEPQIRRIVEKD---MPRTGER 429

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++                      +I  ++   +++ L     +          +
Sbjct: 430 QTLMFSATFPD------------------VIQADKRSFLLDLLNATRYKNGTESLTLVFV 471

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E +K ++             +    ++ IHG  S  ++E  +  F++G   +L+AT V  
Sbjct: 472 ETRKGADC------LEEYLHYQGYPVSCIHGERSQREREDALRRFRSGETPILVATAVAA 525

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+   + +I  +        +H++ GR GR   +      ++          + +L 
Sbjct: 526 RGLDISHVTHVINFDLPSDIEEYVHRI-GRTGRMGNLGVATSFFNEKNRNIVRDLVELLT 584

Query: 613 NTE 615
            T 
Sbjct: 585 ETN 587


>gi|229156050|ref|ZP_04284149.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342]
 gi|228627371|gb|EEK84099.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342]
          Length = 454

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEQAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L+    G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLQ----GNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +         IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMVQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGIAITFVAAKDEKHLEEIEKTL 363


>gi|116073020|ref|ZP_01470282.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
 gi|116068325|gb|EAU74077.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
          Length = 599

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 132/343 (38%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q +A  +++           + Q   G+GKT    + +   ++      QA+++A
Sbjct: 65  EPSPIQAAAFPELMLGRD------LVGQAQTGTGKTAAFALPLLERLQKDATKPQALVLA 118

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  K Y+  +  + V  I G      +  AL+R       +++GT     
Sbjct: 119 PTRELAMQVAESFKAYSAGHPHLNVLAIYGGSDFRSQIHALKR----GVDVVVGTPGRVM 174

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPI--PRTL 435
           D ++           L+L   DE  R G    ++    Q      V+L +AT     R L
Sbjct: 175 DHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVVLFSATMPSEIRRL 234

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L +     I  K    + I+   I +    ++    +V+ +   +   I  +    
Sbjct: 235 SKRYLREPAEITIKTKEKEARRIRQRCITLQNSHKLEALNRVLEAVTGEGVIIFART--- 291

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +++    +   E     +A+++G +    +E  ++  + GT  +L+AT V   G+
Sbjct: 292 -----KAITLNVSESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNILVATDVAARGL 346

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV    ++I  +      A +H++ GR GR       IL   P
Sbjct: 347 DVDRIGLVINYDMPFDSEAYVHRI-GRTGRAGRSGEAILFVTP 388


>gi|84393512|ref|ZP_00992267.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84375865|gb|EAP92757.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 423

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 152/412 (36%), Gaps = 38/412 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + F+ PT  QE AI  +L+          +     G+GKT    + +   +      
Sbjct: 21  LSELNFTAPTSVQEQAIPLVLEGKDV------LAGAQTGTGKTAAFGLPIIQRLIETKDN 74

Query: 323 --------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                   +A+++ P   LAQQ ++ +  Y + T I V +  G +    +   L     G
Sbjct: 75  VIPNPKLVRALVLVPTRELAQQVFDNVTSYAKGTDIKVVVAYGGVSMKVQTDNLR----G 130

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            A I++ T     D +    ++L    E        R+           +L     + +T
Sbjct: 131 GADILVATPGRLIDHMFTKNIMLSQ-TEVLVLDEADRMLDMGFMPDIKRILSRMNDVRQT 189

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L  ++  D  I  +  +   + P +  + P N   + + ++   + + +K+  +   I  
Sbjct: 190 LFFSATFDNKIKALAHR-MMQSPSEIQVTPKNSTADTVTQMVYPVDKSRKSELLAYLIGS 248

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           K           +   +      +      A I+G  S   ++  +D FK+G  + LIAT
Sbjct: 249 KNWQQVLVFTKTKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIAT 308

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+     ++  +        +H++ GR GR       I L     +       
Sbjct: 309 DVAARGIDIQQLEQVVNYDMPFKAEDYVHRI-GRTGRAGNTGLAISLMSQDEAYLLGDIE 367

Query: 609 SVL-----KNTEDGFLIA-EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDS 654
            +L     +   +GF  + E+D+   + G      +S   + + A+ ++H +
Sbjct: 368 RLLDTRLPQEWLEGFEPSLEKDIAPDRGGR--SKSRSSEKRKIKAKLKIHQN 417


>gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 481

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 135/364 (37%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
           +PT  Q  AI  +++          +     G+GKT    + +   +             
Sbjct: 40  TPTPIQAQAIPVVVEGRDV------MGAAQTGTGKTAAFTLPILHRLMPLANTSASPARH 93

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q YE +K+Y++ T +   ++ G +    +++AL R       +++
Sbjct: 94  PVRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRGCE----VLV 149

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT- 429
            T     D ++   + L  V     DE  R      L   ++           LL +AT 
Sbjct: 150 ATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATF 209

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R L  + L      ++  + A    I  +   ++   +    + +V S G K   +
Sbjct: 210 SNEIRKLGRSYLNHPVEIEVAARNATANTITQIAYKMSGDQKRAAVVHLVKSRGLKQVIV 269

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    SN +    R     E        IHG  +  D+   +++FK G  ++L+AT
Sbjct: 270 F--------SNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGELEVLVAT 321

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV     +I  +  +     +H++ GR GR       I L+     +      
Sbjct: 322 DVAARGLDVAGVPCVINYDLPYNAEDYVHRI-GRTGRAGATGEAIALFTADEERFLLDIE 380

Query: 609 SVLK 612
            ++K
Sbjct: 381 KLIK 384


>gi|119582644|gb|EAW62240.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_c [Homo
           sapiens]
          Length = 1032

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 427

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 428 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 487

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 488 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 544 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 596

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 597 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 715

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 716 KGYAYTFITEDQARYAGDIIKALE 739


>gi|229526174|ref|ZP_04415578.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis
           VL426]
 gi|229336332|gb|EEO01350.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis
           VL426]
          Length = 464

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 128/344 (37%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A I++ T  
Sbjct: 77  LILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ---RMCKG-ADILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRK-------ILKLLPEKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                  +   K     P++  + P N     +E+        KK   +   ++E     
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|188533798|ref|YP_001907595.1| ATP-dependent RNA helicase DbpA [Erwinia tasmaniensis Et1/99]
 gi|188028840|emb|CAO96702.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 459

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 83/451 (18%), Positives = 174/451 (38%), Gaps = 59/451 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q +++  IL+    +       Q   GSGKT    + +   V+A     QA+++ P 
Sbjct: 27  TPVQAASLPAILEGRDVR------AQAKTGSGKTAAFGLGVMHRVDASQYVTQALVLCPT 80

Query: 331 GILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + +++  + T  I +  + G  P   +R +L        HI++GT     D 
Sbjct: 81  RELADQVTKELRRLARFTANIKILTLCGGQPVGAQRDSLLHA----PHIVVGTPGRILDH 136

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++   L L  +          R+          +++  +    +TL+ ++     I+ I+
Sbjct: 137 LKRETLKLDAIT-TLVLDEADRMLEMGFREDIDMIISHSPQQRQTLLFSATWPQAIAHIS 195

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSV 503
           +K   R P+      ++ +   IE+        +K   +   + E++        N +  
Sbjct: 196 QK-IQRDPLTVETGDVSDLP-AIEQTFYEAGAREKLTALIGLLSERQPASCVVFCNTKRE 253

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +      E+   S   +HG +   D++ ++  F NG+C++L+AT V   G+D+   S++
Sbjct: 254 CDDIAYALENAQISAQPLHGDLEQRDRDQMLIRFANGSCRVLVATDVAARGLDIKALSMV 313

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN---------- 613
           +           +H++ GR  R  +    + L  P     ++     L+           
Sbjct: 314 VNYQLSFDPEVHVHRI-GRTARAGQEGCAVSLVAPDEMIRAHALEDYLQQKLAWSPVSTL 372

Query: 614 ---------------TEDGFLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPEL--HDS 654
                          + DG   A    K R  G+ILG    + G+    + + ++    +
Sbjct: 373 KSAVSKPLPAEMVTVSLDGGRKA----KIR-PGDILGALTGEGGLRGDQVGKIDIGPTLA 427

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            + I R+  + ++ Q      ++G++ R  L
Sbjct: 428 YVAIPRELVRKVMQQL-QQVKIKGKTCRARL 457


>gi|85374360|ref|YP_458422.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
 gi|84787443|gb|ABC63625.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
          Length = 455

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 150/411 (36%), Gaps = 47/411 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  QE AI  +L           I     G+GKT   ++ M   + AG       +++
Sbjct: 23  EPTPIQEQAIPPVL------MMKDIIGIAQTGTGKTASFVLPMIDIMAAGRRRALMPRSL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  +KY +N  + + ++ G +    + KAL         ++I T   
Sbjct: 77  ILEPTRELAAQVAENFEKYGENHDLKMALLIGGVQMGDQIKALNE----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIPR 433
             D  +  K++L      ++DE  R      +   +            +L +AT  P   
Sbjct: 133 LMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICSKLPEQRQTMLFSATMPPPIE 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L    + +    + T      K I    + + +  +      ++ ++  +   +     
Sbjct: 193 KLSKQFMSNPKRIETTRAATTNKDITAFRVNVGQRQKRETLEWLLENDHVETAIVFA--- 249

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N ++ V   N   +        IHG +    + + +  FK+G   +L+A+ V   
Sbjct: 250 -----NRKTTVRELNKSLQRRGFKSGEIHGDIDQNQRNAELQRFKDGEINILVASDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   S +   +        +H++ GR GR            P    ++    +V K 
Sbjct: 305 GLDIKGVSHVFNFDTPWHPDDYVHRI-GRTGRAGAKGRAFTFVAPE---DAEAIDNVEKL 360

Query: 614 TEDGFLIAEED---LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
           TE+   +  +D   ++ +   +  G +Q   PK      E  +   + ARK
Sbjct: 361 TENKIKVFGKDDVRVELKDPSK--GDEQKPKPKRERQSREEDEE--KPARK 407


>gi|303288181|ref|XP_003063379.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455211|gb|EEH52515.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 513

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 131/364 (35%), Gaps = 36/364 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----AGGQ----- 323
           PT  Q+ AI   L       R   +     GSGKT      +   +     AG Q     
Sbjct: 76  PTPVQKYAIPISLA------RRDLMACAQTGSGKTAAFCFPIIYGLLDRGLAGSQRGGRK 129

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               A+++AP   LA Q +E  +K+   T +   +I G  P A + + +ER       I+
Sbjct: 130 TFPLALVIAPTRELAIQIHEESRKFAYQTGVASCVIYGGAPAAQQFREMER----GCDIL 185

Query: 380 IGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T     D +   K+ L  V     DE  R          Q         M  T   +T
Sbjct: 186 VATPGRLIDLVDRAKISLSEVRYLALDEADRMLDMGFEP--QIRQIVEQRDMPPTGERQT 243

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++    +I ++           TV    +    + ++++ + S   K   +   +  
Sbjct: 244 MLFSATFPREIQRMASDFLKDYIFLTVGRVGSSHTLITQQIEYLRSYEDKKSMLMDLVHA 303

Query: 495 KK-----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            K         +   ++              IHG  +  ++E  + SF++G   +L+AT 
Sbjct: 304 VKGLTLVFVETKRGADQLEDWLSREGFPSTSIHGDRTQQEREYALKSFRSGRTPILVATD 363

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+   + +I  +        +H++ GR GR  +       +    +  + + + 
Sbjct: 364 VAARGLDIPHVTHVINFDLPSDIDDYVHRI-GRTGRAGKKGLATAFFTDKDAGLARSMIE 422

Query: 610 VLKN 613
           ++  
Sbjct: 423 LMTE 426


>gi|167969576|ref|ZP_02551853.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis H37Ra]
          Length = 563

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/359 (21%), Positives = 131/359 (36%), Gaps = 37/359 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SPT  Q + I  ++           +     G+GKT    I M + ++      QA+++ 
Sbjct: 35  SPTAIQAATIPALMAG------SDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLV 88

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y    +Q+ V  I G    A +   L R     A +++GT     
Sbjct: 89  PTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR----GAQVVVGTPGRMI 144

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTL 435
           D ++   L        +L   DE    G    +   L++      V L +AT  P  R L
Sbjct: 145 DHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKL 204

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D        K A  + I    I + R  + +   +V+  E  +A  +  +    
Sbjct: 205 SAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDAL--TRVLEVEPFEAMIVFVRT--- 259

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E           S A I G +    +E  + + ++G   +L+AT V   G+
Sbjct: 260 -----KQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGL 314

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           DV   S ++  +  H   + +H++ GR GR     + ++   P             + T
Sbjct: 315 DVERISHVLNYDIPHDTESYVHRI-GRTGRAGRSGAALIFVSPRELHLLKAIEKATRQT 372


>gi|118594179|ref|ZP_01551526.1| putative ATP-dependent RNA helicase protein [Methylophilales
           bacterium HTCC2181]
 gi|118439957|gb|EAV46584.1| putative ATP-dependent RNA helicase protein [Methylophilales
           bacterium HTCC2181]
          Length = 427

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 138/373 (36%), Gaps = 36/373 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N++  I + I       PT  Q  +I +I+ +         +     G+GKT   ++ +
Sbjct: 6   FNLDASILKAIQEAGYDQPTPIQTKSIPEIMLNK------HVLASAQTGTGKTAAFVLPI 59

Query: 315 AAAVEA------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
              +        G + +I++P   LA Q  + IKKY++  +I    ITG +    +    
Sbjct: 60  LDKLTKNRSEGRGPRVLIVSPTRELATQITDSIKKYSRYLRINSITITGGISYGLQN--- 116

Query: 369 ERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFG-----VQQRLKLTQKA 418
            R+      I++ T     D      I +  L ++I+DE  R          R      +
Sbjct: 117 -RMFSKPIDILVATPGRLLDLYQQKKINFKGLEVMILDEADRMLDMGFVPDIRKIYNATS 175

Query: 419 TAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
               +L+ +AT  P  + +    L +     I    +G K IK +I   +      + L 
Sbjct: 176 KKQQMLMFSATFDPPIQKIAQEFLTNPVTISIKPDVSGHKNIKQLIYFADNQSHKQQMLD 235

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
             +   +    I            + + ++ +    H     + +HG MS   +   ++ 
Sbjct: 236 HFIKNDEVTQAIIFT-------ATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINR 288

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK    K+L+AT +   GIDV + S +   +   F    +H++ GR GR       I L 
Sbjct: 289 FKRNETKILVATDLASRGIDVKNISHVFNYDMPRFAEDYIHRI-GRTGRANNKGIAISLV 347

Query: 597 HPPLSKNSYTRLS 609
            P   +       
Sbjct: 348 SPTDREFLRKIER 360


>gi|170727862|ref|YP_001761888.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169813209|gb|ACA87793.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 413

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 127/357 (35%), Gaps = 30/357 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT+ Q  AI  IL           +     G+GKT    + +   +             
Sbjct: 23  EPTQVQAEAIPAILAG------SDLMAGAQTGTGKTAAFALPILERLSQLKSSQTSYELT 76

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q ++   +Y     +   I+ G +    +   L+        I+I
Sbjct: 77  PVRALILTPTRELALQVHQSFVRYGDGLTLKSAIVYGGVSIDAQADILKA----GVDILI 132

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D ++   L L  +     F    R+           +L       +TL+ ++ 
Sbjct: 133 ATPGRLLDHLRRGSLTLTQL-AFLVFDEADRMLDMGFKDEIDAILKQLPKERQTLLFSAT 191

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
            D  +  ++++   + P    +   N     +E+    +   +K+  +C  I  KK    
Sbjct: 192 FDDGVFNLSKR-LLKDPKLIEVGKRNAAAGKVEQRVYAVDADRKSELLCHLILSKKWRQV 250

Query: 500 -----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +   ++  +   +        HG +S   +E V+  FK+G  ++L+AT V   G
Sbjct: 251 LIFSRKKQGADKLAAKLVNEGVKALAFHGDLSQSVREKVLQEFKSGELQVLVATDVAARG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           +DV    +++           +H++ GR GR       I LY    +       +VL
Sbjct: 311 LDVESLEVVVNYELPFVAEDYVHRI-GRTGRAGNSGLAITLYCEDDALLLEEVEAVL 366


>gi|10039335|dbj|BAB13310.1| Vasa-related protein PoVAS1 [Ephydatia fluviatilis]
          Length = 546

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 125/370 (33%), Gaps = 48/370 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA------------AAVEA 320
           PT  Q+ AI  IL           +     GSGKT   L+                A   
Sbjct: 116 PTPVQKYAIPIILAGRD------LMACAQTGSGKTAAFLLPAITKLIKEQVPGGSQAETQ 169

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             Q +I++P   L  Q Y   +K+T  T     +  G     ++ K LE    G  +I++
Sbjct: 170 SPQVLIISPTRELTLQIYNEARKFTHGTMYRPVVAYGGTAVGYQLKQLE----GGCNILV 225

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRL------KLTQKATAPHVLLM 426
           GT     D +   +        LIL   D     G +  +          +      L+ 
Sbjct: 226 GTPGRLLDFLNRGQVQLDQISVLILDEADRMLDMGFEPEIRKIVSNYSMPETGKRQTLMF 285

Query: 427 TATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +AT     + +    L +     +         I   II ++   +  +  +++ + G  
Sbjct: 286 SATFPEEIQRIANEFLSNYLFLTVGRVGGATSDITQRIIEVDEFGKREKLSEILSATGVD 345

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              +            +   +   +     +     IHG     ++E  +  F++G   +
Sbjct: 346 RTLVFV--------ETKRNADFLATYLSQESFPTTSIHGDRFQREREEALRDFRSGLAPV 397

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN- 603
           L+AT+V   G+D+ D   ++  +  +     +H++ GR GR          +H       
Sbjct: 398 LVATSVAARGLDIPDVKHVVNYDLPNNIEEYVHRI-GRTGRIGNQGLATAFFHKEKDAPL 456

Query: 604 SYTRLSVLKN 613
           +   + VL +
Sbjct: 457 ARALIKVLSD 466


>gi|163943135|ref|YP_001648019.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|163865332|gb|ABY46391.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 481

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 139/371 (37%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L L  +        DE    G   Q   +  +     + ++ +  +P
Sbjct: 129 TPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTMLFSATLP 188

Query: 433 RTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           + +   S   +D     +I         I+  +  +   +++     V   E   +  I 
Sbjct: 189 KDVEKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMKEEEKLSLLKDVTTIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  F+          +        IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVFQQ--------LKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNNGKAITFMTPYENRFLEEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|326479821|gb|EGE03831.1| ATP-dependent RNA helicase DBP2 [Trichophyton equinum CBS 127.97]
          Length = 536

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 138/368 (37%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           +   + GSGKTL   +     + A        G  
Sbjct: 142 KPTPIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPI 195

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T 
Sbjct: 196 VLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLTR----GVEVCIATP 251

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++  +        L+L   D     G   Q R  ++Q        + +AT    
Sbjct: 252 GRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKD 311

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I  +        T    V+    + D +I+ L+ ++ + K    
Sbjct: 312 VRQLANDFLQDYIQVYIGSQALSANHRITQIVEVVSEFEKRDRMIKHLERIMEDKKSKVL 371

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            R   +    L +    +++I HG     +++ V++ FK G   +++A
Sbjct: 372 IFT-------GTKRVADDITRFLRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVA 423

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV D + ++  +  +     +H++ GR GR     + I L+    +K +   
Sbjct: 424 TDVASRGIDVRDITHVLNHDYPNNSEDYVHRI-GRTGRAGANGTAITLFTTENAKQARDL 482

Query: 608 LSVLKNTE 615
           + +L  ++
Sbjct: 483 VKILTESK 490


>gi|313246316|emb|CBY35237.1| unnamed protein product [Oikopleura dioica]
          Length = 653

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 128/365 (35%), Gaps = 40/365 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------------E 319
           PT  Q+ A+  I            +     GSGKT   L+ M + +             +
Sbjct: 220 PTPVQKYAVPIIHAGRD------IMSCAQTGSGKTAAFLMPMLSNIFHNPGKIPRHQSRK 273

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           A   A++++P   L  Q Y+   K+   +++   +I G      + + L R      H++
Sbjct: 274 AYPLALVLSPTRELTNQIYQEALKFAYRSKVRPCVIYGGADVGEQLRDLSR----GCHLL 329

Query: 380 IGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T     D ++  K+ L       +DE  R          ++     +         +T
Sbjct: 330 VATPGRLADFLERGKVGLEFCRFLCLDEADRMLDMGFEPQIRRIIEKVIFPS----DRQT 385

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I  +         I   +  +      I +    + E +K   +C  +E 
Sbjct: 386 LMFSATFPKQIQALASDFLE-NYIFLAVGRVGSTSANITQRFEYVQETEKVRKLCELLEN 444

Query: 495 KKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +E         +   +  +            IHG  +  ++E  +  FK+G   +L+AT
Sbjct: 445 GQEMLTIVFTETKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFKSGQTPILVAT 504

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR          Y+   +K S   L
Sbjct: 505 AVAARGLDIPNVRHVINFDLPSEIDEYVHRI-GRTGRAGNTGWATAFYNEKNAKISDDLL 563

Query: 609 SVLKN 613
            +L  
Sbjct: 564 QLLTE 568


>gi|229527823|ref|ZP_04417214.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)]
 gi|229334185|gb|EEN99670.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)]
          Length = 464

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 128/344 (37%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A I++ T  
Sbjct: 77  LILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ---RMCKG-ADILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRK-------ILKLLPEKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                  +   K     P++  + P N     +E+        KK   +   ++E     
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|194745414|ref|XP_001955183.1| GF18634 [Drosophila ananassae]
 gi|190628220|gb|EDV43744.1| GF18634 [Drosophila ananassae]
          Length = 704

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 77/461 (16%), Positives = 157/461 (34%), Gaps = 50/461 (10%)

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +    +   +     + F   H              R R  ++  + GQ        Q  
Sbjct: 214 LPMRPVDFSNLAPFKKNFYQEH--PNVASRSPYEVQRYRDEHEITVRGQ-------AQNP 264

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +    +++   + ++I R    +PT  Q       +           +     GSGKTL
Sbjct: 265 IQDFTEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSG------SNFVGIAKTGSGKTL 318

Query: 309 VALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
             ++     +          G  A+++AP   LAQQ  +   ++  ++ +    + G  P
Sbjct: 319 GYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAP 378

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLT 415
           +  + + L+R       I+I T     D     S    +   +++DE  R          
Sbjct: 379 KGSQMRDLQRGCE----IVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQI 434

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEV 471
           +K  +         P  +TL+ ++    ++ ++ E   G      +    +   + I +V
Sbjct: 435 RKIVSQIR------PDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQV 488

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGR 524
           +E       E K    +    +  +           +  V+        F      IHG 
Sbjct: 489 VEVCDEFSKEEKLKSLLSDIYDTSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGD 548

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
            S  +++ V+  F++G   +L+AT V   G+DV     +I  +        +H++ GR G
Sbjct: 549 KSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRI-GRTG 607

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           R     +    +    +K +   + VL+        A E+L
Sbjct: 608 RSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENL 648


>gi|15600973|ref|NP_232603.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121586756|ref|ZP_01676539.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121727729|ref|ZP_01680817.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|147672261|ref|YP_001215860.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|153816784|ref|ZP_01969451.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|227811827|ref|YP_002811837.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|229506632|ref|ZP_04396141.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286]
 gi|229510570|ref|ZP_04400050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|229517298|ref|ZP_04406743.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9]
 gi|229605109|ref|YP_002875813.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236]
 gi|254850597|ref|ZP_05239947.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255745988|ref|ZP_05419935.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101]
 gi|262162174|ref|ZP_06031189.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1]
 gi|262167359|ref|ZP_06035068.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27]
 gi|298500057|ref|ZP_07009863.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
 gi|9657596|gb|AAF96116.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549053|gb|EAX59090.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121629946|gb|EAX62356.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|126512587|gb|EAZ75181.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|146314644|gb|ABQ19184.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|227010969|gb|ACP07180.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|227014875|gb|ACP11084.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|229345334|gb|EEO10307.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9]
 gi|229353015|gb|EEO17955.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|229356983|gb|EEO21901.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286]
 gi|229371595|gb|ACQ62017.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236]
 gi|254846302|gb|EET24716.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255735742|gb|EET91140.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101]
 gi|262024243|gb|EEY42935.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27]
 gi|262028249|gb|EEY46907.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1]
 gi|297542038|gb|EFH78089.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
          Length = 451

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 130/344 (37%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A I++ T  
Sbjct: 77  LILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ---RMCKG-ADILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++        H +L       + L+ ++
Sbjct: 133 RLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDI------HKILKLLPEKRQNLLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               +I ++  K     P++  + P N     +E+        KK   +   ++E     
Sbjct: 187 TFSTEIRELA-KGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|309808765|ref|ZP_07702651.1| putative transcription-repair coupling factor [Lactobacillus iners
           LactinV 01V1-a]
 gi|308168001|gb|EFO70133.1| putative transcription-repair coupling factor [Lactobacillus iners
           LactinV 01V1-a]
          Length = 708

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 2/190 (1%)

Query: 219 EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
           EW           E +A ++  L +      E G     + ++ +      P+  T  Q 
Sbjct: 510 EWAKTKCRVQEKIEDIADEL--LAIYAHRATEKGFAFLPDDELQRDFEAAFPYLETPDQI 567

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
            AI++I  DM ++  M R+L GDVG GKT VAL A   A+++G Q   + P  ILA+QHY
Sbjct: 568 KAIREIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVPTTILAEQHY 627

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
             + +  ++  + V ++     +    +    +++G+  I++GTH +    I++  L L+
Sbjct: 628 ATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRDIKFKNLGLL 687

Query: 399 IVDEQHRFGV 408
           I+DE+ RFGV
Sbjct: 688 IIDEEQRFGV 697



 Score = 38.1 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
           +   + +  +      +  GK+  ++ P      E ++ +++ERF    + F  ++A++ 
Sbjct: 591 VGFGKTEVALRAAFKAIDSGKQVAFLVPTTI-LAEQHYATMLERF----KDFPVNVAMLC 645

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATT-VIEVGIDVVDASIIIIENAEHFG 572
              ++ + + +  +  NG   +++ T  ++   I   +  ++II+  + FG
Sbjct: 646 RFQTEKEADEIATNLSNGKIDIVVGTHRILSRDIKFKNLGLLIIDEEQRFG 696


>gi|68069123|ref|XP_676472.1| RNA helicase-1 [Plasmodium berghei strain ANKA]
 gi|56496186|emb|CAH99280.1| RNA helicase-1, putative [Plasmodium berghei]
          Length = 393

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 125/345 (36%), Gaps = 42/345 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+  IK IL+          I Q   G+GKT   +I+    +       QA+I+A
Sbjct: 45  KPSAIQQRGIKPILKGYDT------IGQAQSGTGKTATFVISSLQLINYDYVACQALILA 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + +       ++      G          L++      H+++GT     D
Sbjct: 99  PTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQ----GVHMVVGTPGRVYD 154

Query: 389 SIQYYKLI--------LVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
            I    L         L   DE    G + ++     +      V L +AT     L LT
Sbjct: 155 MIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVALFSATMPQEILELT 214

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-- 496
           +    D            P   ++       E I+    V  E  K   +C   E     
Sbjct: 215 TRFMRD------------PKTILVKKDELTLEGIQFYVAVEKEEWKLDTLCDLYETLTIT 262

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N R  V+       +   +++ +HG M   D++ +M  F++G+ ++L+ T ++ 
Sbjct: 263 QSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLA 322

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            GIDV   S++I  +        +H++ GR GR       I    
Sbjct: 323 RGIDVQQVSLVINYDLPCSPDTYIHRI-GRSGRFGRKGVAINFVT 366


>gi|16800283|ref|NP_470551.1| hypothetical protein lin1214 [Listeria innocua Clip11262]
 gi|16413688|emb|CAC96445.1| lin1214 [Listeria innocua Clip11262]
          Length = 470

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 136/370 (36%), Gaps = 38/370 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  ++ +  + +   T  Q++ I   L           + +   GSGKT    I +A  
Sbjct: 7   SEEIKRAINELGYKEATPVQKAVIPVALTGED------IVAKSQTGSGKTAAFAIPIAEQ 60

Query: 318 V---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           V   E   QA+I+ P   LA Q         +  +I    I G  P A ++  L +    
Sbjct: 61  VVWEENKPQALIIVPTRELAMQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKN-- 118

Query: 375 QAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
             HI++GT     D I+           L+L  VDE    G   ++   L++       L
Sbjct: 119 --HIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNL 176

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             +AT       L      +   I        PI  V +  +  ++ ++   V+++E   
Sbjct: 177 FFSATLPEEMQDLIKRYQDNPMVIEMASEKTNPIFHVEMQTDNKEKTLKD--VLITENPD 234

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +  I    + +            + L +      + IHG +   D+   MD FK+G  + 
Sbjct: 235 SAIIFCNTKNQ-----------VDELTDLLDVKASKIHGGLRQEDRFRAMDDFKSGKSRF 283

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   GIDV + S++I  +        +H++ GR GR  +    I       +   
Sbjct: 284 LIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRI-GRTGRAGKSGKAISFVKTNENPLL 342

Query: 605 YTRLSVLKNT 614
                +L  T
Sbjct: 343 RDIEEMLNIT 352


>gi|312172469|emb|CBX80726.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora ATCC BAA-2158]
          Length = 459

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 81/451 (17%), Positives = 170/451 (37%), Gaps = 59/451 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q  ++  IL     +       Q   GSGKT    + +   V+A     QA+++ P 
Sbjct: 27  TPVQAESLPAILAGRDVR------AQAKTGSGKTAAFGLGVMHRVDASQYVTQALVLCPT 80

Query: 331 GILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + +++  + T  I +  + G  P   +R +L        HI++GT     D 
Sbjct: 81  RELADQVTKELRRLARFTSNIKILTLCGGQPVGAQRDSLLHA----PHIVVGTPGRILDH 136

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +Q   L L  +          R+           ++  +    +TL+ ++     I++I+
Sbjct: 137 LQRETLKLDAI-NTLVLDEADRMLEMGFREDIDAIISHSPQTRQTLLFSATWPQAIAQIS 195

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSV 503
           +    R P+      ++ +   IE+     +  +K   +   + E++        N +  
Sbjct: 196 QS-IQRNPLTIETGDVSDLP-AIEQTFYEAASREKLTALIGLLSERQPSSCVVFCNTKRE 253

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +      +    S   +HG +   +++ ++  F NG+C++L+AT V   G+D+   +++
Sbjct: 254 CDDIAYALDKAQISAQPLHGDLEQRERDQMLIRFANGSCRVLVATDVAARGLDIKALAMV 313

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN---------- 613
           +           +H++ GR  R  +    +    P     ++     L+           
Sbjct: 314 VNYQLSFDPEVHVHRI-GRTARAGQEGCAVSFVAPDEMIRAHALEDYLQQKLLWCNLSAL 372

Query: 614 ---------------TEDGFLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELH--DS 654
                          + DG   A    K R  G+ILG      G+    + + ++    +
Sbjct: 373 KSVAARPLLAEMVTVSLDGGRKA----KIR-PGDILGALTGDGGLSGDQVGKIDIAPTLA 427

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            + I R+ A+ ++ Q      ++G+S R  L
Sbjct: 428 YVAIRRELARKVMQQL-QQVKIKGKSCRARL 457


>gi|218676102|ref|YP_002394921.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324370|emb|CAV25741.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 523

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/343 (18%), Positives = 134/343 (39%), Gaps = 36/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
            P+  QE A+  +L           +     G+GKT    + +   +  G +       A
Sbjct: 23  KPSPIQEKAVPAVLTGKDV------MAAAQTGTGKTAGFTLPILEMLSKGPRVRQNQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q    + KY  N  +   ++ G +    + + L +     + +++ T  
Sbjct: 77  LVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLRK----GSDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRK-------ILAFLPKKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +E+    + + KKA  +   I++     
Sbjct: 186 ATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLIKDNDWRQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    +     E    + A IHG  S   +   +++FK G  ++L+AT +   
Sbjct: 246 VLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           GID+     ++  +  +     +H++ GR GR  E+   I L 
Sbjct: 306 GIDIPQLPQVVNFDLPNVSEDYVHRI-GRTGRAGEVGKAISLV 347


>gi|242007840|ref|XP_002424727.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus
           corporis]
 gi|212508220|gb|EEB11989.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus
           corporis]
          Length = 449

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 129/345 (37%), Gaps = 39/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AI      M          Q   G+GKT    I++   ++      QA+I+A
Sbjct: 98  KPSAIQQRAI------MPCIKGHDVTAQAQSGTGKTATFSISILQQIDTSINECQALILA 151

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + +         +     G        + LE       H+++GT     D
Sbjct: 152 PTRELAQQIQKVVIALGDFMNAMCHACIGGTNVREDMRKLEH----GVHVVVGTPGRVYD 207

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I    L        +L   DE    G + ++    +     V         + ++L++ 
Sbjct: 208 MINRRCLRTDRIKIFVLDEADEMLSRGFKDQIHDVFQTLDVDV---------QVILLSAT 258

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKK--- 496
              D+ ++++K   R PI  ++       E I++  + +     K   +C   E      
Sbjct: 259 MPHDVLEVSKKFM-RNPINILVQKDELTLEGIKQFYISVEREEWKFETLCDLYETLTITQ 317

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   ++E +M  F++G+ ++LI T ++  
Sbjct: 318 AVIFCNTRRKVDMLTDFMHKKDFTVSAMHGDMEQREREFIMRQFRSGSSRVLITTDLLAR 377

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GIDV   S++I  +        +H++ GR GR       I     
Sbjct: 378 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTE 421


>gi|90578403|ref|ZP_01234214.1| putative ATP-dependent RNA helicase DbpA [Vibrio angustum S14]
 gi|90441489|gb|EAS66669.1| putative ATP-dependent RNA helicase DbpA [Vibrio angustum S14]
          Length = 461

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 87/448 (19%), Positives = 169/448 (37%), Gaps = 58/448 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q  ++  IL+          I QG  GSGKT    + +   ++      Q +++ P 
Sbjct: 28  TPIQAQSLPLILEGKDV------IAQGKTGSGKTAAFGLGLLQNLKVKRFRVQTLVLCPT 81

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + I++  +    I V  + G  P   +  +LE      AHII+GT    ++ 
Sbjct: 82  RELADQVAKEIRRLARAIHNIKVLTLCGGTPFGPQIGSLEH----GAHIIVGTPGRVEEH 137

Query: 390 I--------QYYKLILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTS 439
           +        +   L+L   D     G Q  L        +    LL +AT   +   +  
Sbjct: 138 VRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAITDVAPSDRQTLLFSATYPTQIASIAK 197

Query: 440 LGDIDISKIT-EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               +  ++  E       I      +   D+ +  ++++LS+ +    +         +
Sbjct: 198 RIMRNPVEVKVESNHDNSSISQHFYKVESNDDRLRAVRLLLSQHRPESCVI------FCN 251

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             R   E  + L ++  SSIA+ HG +   +++  +  F N +  +L+AT V   G+D+ 
Sbjct: 252 TKREAQEISDDLEDYGFSSIAL-HGDLEQRERDRTLVLFANKSRSILVATDVAARGLDID 310

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +   +I  +        +H++ GR GR         L+              L     G 
Sbjct: 311 NLDAVINYHLARDTEVHVHRI-GRTGRAGSKGIACSLFSDKEHYKVALLEDYLDRPISGE 369

Query: 619 LI-AEEDLKQ---R----------------KEGEILG--IKQSGMPKFLIAQPELHD--S 654
            + AE  L Q   R                + G+ILG    ++G+    + +  + D  +
Sbjct: 370 ALPAEHLLDQPTFRPEMVTLMIDGGKKQKVRPGDILGALTGENGIAGSDVGKINVFDFCA 429

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIR 682
            + + R+ A+  L +  +   ++G++ R
Sbjct: 430 YVAVKREVARAALKKLEN-GRIKGRNFR 456


>gi|86144457|ref|ZP_01062789.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
 gi|85837356|gb|EAQ55468.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
          Length = 523

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/343 (18%), Positives = 134/343 (39%), Gaps = 36/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
            P+  QE A+  +L           +     G+GKT    + +   +  G +       A
Sbjct: 23  KPSPIQEKAVPAVLTGKDV------MAAAQTGTGKTAGFTLPILEMLSKGPRVRQNQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q    + KY  N  +   ++ G +    + + L +     + +++ T  
Sbjct: 77  LVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLRK----GSDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRK-------ILAFLPKKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +E+    + + KKA  +   I++     
Sbjct: 186 ATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLIKDNDWRQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    +     E    + A IHG  S   +   +++FK G  ++L+AT +   
Sbjct: 246 VLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           GID+     ++  +  +     +H++ GR GR  E+   I L 
Sbjct: 306 GIDIPQLPQVVNFDLPNVSEDYVHRI-GRTGRAGEVGKAISLV 347


>gi|56708511|ref|YP_170407.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670982|ref|YP_667539.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457676|ref|ZP_03666149.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371138|ref|ZP_04987140.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875360|ref|ZP_05248070.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56605003|emb|CAG46104.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321315|emb|CAL09487.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569378|gb|EDN35032.1| hypothetical protein FTBG_00898 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841359|gb|EET19795.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159724|gb|ADA79115.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 569

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 139/351 (39%), Gaps = 44/351 (12%)

Query: 269 IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM-----AAAVEAGG 322
           + +  PT  Q+ AI  IL           + Q   G+GKT    + +      A+ +   
Sbjct: 25  LGYENPTPIQQYAIPYILSGRDV------LGQAQTGTGKTAAFALPLINNMDLASRDRAP 78

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E  + + +N   + V  I G      + +AL++       +++G
Sbjct: 79  QVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQ----GVKVVVG 134

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I+           L+L   DE  R G    +K      +            +
Sbjct: 135 TTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQC---------Q 185

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ I E+   R P K  +    +    + +  +V+   +K   +   +E
Sbjct: 186 RLLFSATIPTDIADIIEEYL-RNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLE 244

Query: 494 EKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            ++            S +E  ++L       +A I+G M    +E ++D F++    +L+
Sbjct: 245 TEETDGVIIFVKTKTSTIEVADNLK-ALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           AT V+  GID+   S +I  +  +     +H++ GR GR     + I L  
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRI-GRTGRAGREGTSISLVP 353


>gi|327392908|dbj|BAK10330.1| ATP-independent RNA helicase DbpA [Pantoea ananatis AJ13355]
          Length = 439

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 88/453 (19%), Positives = 168/453 (37%), Gaps = 60/453 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           S T  Q + +  IL     +       Q   GSGKT    I +   +++     QA+I+ 
Sbjct: 5   SMTPVQAATLPAILDGRDVR------AQAKTGSGKTAAFGIGLLQHIDSAHFQTQALILC 58

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +++  + T+ I +  + G  P + +R +L        HI++GT     
Sbjct: 59  PTRELADQVSNVLRQLARFTRNIKILTLCGGQPMSAQRDSLVHA----PHIVVGTPGRIL 114

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVL 437
           D I+           L+L   D     G +  +   +     +   LL +AT       L
Sbjct: 115 DHIKRETLKLESLRTLVLDEADRMLEMGFRDDMETIIAATPASRQTLLFSATWPEGIAAL 174

Query: 438 TSLGDID-ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +     + +S +TE+ +    I+   I  +  +++   + ++      +  +        
Sbjct: 175 SQRFQREALSVVTEEVSELPAIEQQFIEASHGEKLSLLISLLSERQPSSCVVF------- 227

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +   +   +       S   +HG +   D+E V+  F NG+ ++L+AT V   G+D
Sbjct: 228 -CNTKRECDDIAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVATDVAARGLD 286

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS------- 609
           +   S+++           LH++ GR  R  E  + +          ++           
Sbjct: 287 IKLLSLVVNYQLAWDPEVHLHRI-GRTARAGEQGAAVSFVAADEMARAHALEDFLQQKLP 345

Query: 610 -----VLKNTEDGFLIAEEDL--------KQRKEGEILG--IKQSGMPKFLIAQPELHD- 653
                 LK +      A   L        K R  G+ILG    ++G     I + +L   
Sbjct: 346 WVAASSLKKSSKALPAAMMTLCIDGGRKAKIR-PGDILGALTGEAGYRADQIGKIDLTAT 404

Query: 654 -SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            + + I    AK  L +      ++G++ R +L
Sbjct: 405 HAYVAIEAAQAKQALVKLKQ-GKIKGKTCRAVL 436


>gi|327268478|ref|XP_003219024.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Anolis
           carolinensis]
          Length = 706

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 134/374 (35%), Gaps = 47/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I      K++   +     GSGKT   L+ + + +   G          
Sbjct: 244 PTPVQKYAIPII------KDKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGDALRAMKE 297

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K+   +++   ++ G      + + LER 
Sbjct: 298 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPCVVYGGADIGQQIRDLER- 356

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLM 426
                H+++ T     D ++  K+ L       +DE  R          ++        M
Sbjct: 357 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEKDT--M 411

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
               + +T++ ++    +I  +  +    + I   +  +    E I +  V + +  K  
Sbjct: 412 PPKGVRQTMMFSATFPKEIQMLA-RDFLEEYIFLAVGRVGSTSENITQKVVWVEDSDKRS 470

Query: 487 WICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           ++   ++              +   +           +   IHG  S  D+E  +  F++
Sbjct: 471 FLLDLLDATGKDSLTLVFVETKKGADSLEDFLFREGYACTSIHGDRSQRDREEALHQFRS 530

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++  
Sbjct: 531 GRSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATSFFNER 589

Query: 600 LSKNSYTRLSVLKN 613
               +   L +L  
Sbjct: 590 NINITKDLLDLLVE 603


>gi|325120651|emb|CBZ56206.1| DEAD-box ATP-dependent RNA helicase 34, related [Neospora caninum
           Liverpool]
          Length = 411

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/355 (21%), Positives = 128/355 (36%), Gaps = 37/355 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+  IK IL      +R   I Q   G+GKT    IA    ++      Q +I+A
Sbjct: 60  KPSAIQQRGIKPIL------DRHDTIGQAQSGTGKTATFAIAALQLIDYNINNCQVLILA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + +       Q+      G          L+       H+++GT     D
Sbjct: 114 PTRELAQQIQKVVLALGDYLQVRCHACVGGTVVRDDIAKLKA----GVHMVVGTPGRVHD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
            ++   L        I+   DE    G + ++     +      V L +AT     L LT
Sbjct: 170 MMEKRHLRVDDMKLFIMDEADEMLSRGFKSQIYDVFKKLPPDVQVALFSATMPQDILELT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIE--RLKVVLSEGKKAYWICPQIEE 494
           +    D  +I  K      + I+   + + + D  +E            +A   C     
Sbjct: 230 TKFMRDPKRILVKNDELTLEGIRQFYVAVEKEDWKLETLCDLYETLTITQAIIYCNT--- 286

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R  V+   S       +++ +HG M    +E +M  F++G+ ++LI T ++  G
Sbjct: 287 ------RRKVDFLTSKMSERDFTVSSMHGDMDQKSREMIMREFRSGSTRVLITTDLLARG 340

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           IDV   S++I  +        +H++ GR GR       I        +       
Sbjct: 341 IDVQQVSLVINYDLPATKENYIHRI-GRSGRFGRKGVAINFVTSSDVEQLKEIEK 394


>gi|313213311|emb|CBY37141.1| unnamed protein product [Oikopleura dioica]
          Length = 499

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/363 (20%), Positives = 134/363 (36%), Gaps = 40/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q  +    L        M  I     GSGKTL  ++     + A        G  
Sbjct: 77  TPTTIQSQSWPIAL----SGADMQGI--ARTGSGKTLAFVLPSIIHIMAQPDLRPGDGPV 130

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AVI+AP   LA+Q  E  +++ +   +    + G   +  +  ALER     AHI++   
Sbjct: 131 AVILAPTRELAKQVQEVAEQFGKPCGVNTVAVYGGADKRAQIGALER----GAHIVVACP 186

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D IQ  +        LIL   D     G + +++    Q       L+ +AT    
Sbjct: 187 GRLLDLIQSGRTNLHRTTFLILDEADRMLDMGFEPQIRKIVGQIRQDRQTLMFSATWPKE 246

Query: 434 TLVLTSLGDIDISKI---TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
              L S      ++I    ++      I+ V+  ++  D+ +               +  
Sbjct: 247 IQKLASDFMKTPTQIFIGNQELTANPNIEQVVEVVSDFDKAMRFNYWFQQITSTKILVFT 306

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   + +   +       +     A IHG     ++E V+  F+NG   +L+AT V
Sbjct: 307 --------DTKRDCDNLAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISVLVATDV 358

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D   +I  +        +H++ GR  RGE+    I       +K++   + +
Sbjct: 359 AARGLDIDDIGTVINYDFPSQLEDYVHRI-GRTARGEKKGKSISFITAKSAKHASALVKL 417

Query: 611 LKN 613
           L+ 
Sbjct: 418 LEQ 420


>gi|153215146|ref|ZP_01949844.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
 gi|124114870|gb|EAY33690.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
          Length = 464

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 128/344 (37%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPKVRAYQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A I++ T  
Sbjct: 77  LILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ---RMCKG-ADILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRK-------ILKLLPEKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                  +   K     P++  + P N     +E+        KK   +   ++E     
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|254476796|ref|ZP_05090182.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
 gi|214031039|gb|EEB71874.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
          Length = 447

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 128/357 (35%), Gaps = 27/357 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  AI   L           +     G+GKT    + + A +   G+        
Sbjct: 24  EPTPIQARAIPHALNGKDV------LGLAQTGTGKTAAFGVPLIAQMMQYGRKPAAKTVR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q    +K  T+ T +   ++ G +    +   L R       I+I T 
Sbjct: 78  GLVLAPTRELANQIAATLKGLTEGTPLKTGLVVGGVSINPQISRLSR----GTDILIATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    L L   D        Q L L        +  +      +T++ ++    
Sbjct: 134 GRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKISSLL-PQERQTMLFSATMPK 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--- 500
            +++I        P++  + P  +  + I +    +++ +K   +   + E K+      
Sbjct: 193 QMNEIANSYLN-APVRIEVSPPGKAADKITQSVHFIAKAEKLSLLKELLAEHKDERTLVF 251

Query: 501 ---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +  +E+          S A IHG  S   +E  + +FK+G  K+L+AT V   G+D+
Sbjct: 252 GRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALAAFKSGEVKILVATDVAARGLDI 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
            D   +      +   A +H++ GR  R  +    +    P            +K T
Sbjct: 312 PDVKFVYNYELPNVPDAYVHRI-GRTARAGKDGQAVAFCAPDEMDELKAIQKTMKIT 367


>gi|300707737|ref|XP_002996065.1| hypothetical protein NCER_100895 [Nosema ceranae BRL01]
 gi|239605329|gb|EEQ82394.1| hypothetical protein NCER_100895 [Nosema ceranae BRL01]
          Length = 528

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 67/404 (16%), Positives = 147/404 (36%), Gaps = 51/404 (12%)

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFS--------------PTKSQESAIKDILQDMSQK 291
            F+ +  I I+ +         + PF               PT  Q       L      
Sbjct: 109 NFRNQHDIKISGDVPHPYVKFEHAPFENEVLNNFKLKAFTSPTPIQAQGWPMALTG---- 164

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKK 343
             M+ I Q   GSGKTL  ++       A        G   +++AP   L  Q  +   +
Sbjct: 165 KDMVGIAQ--TGSGKTLSFVLPALIHARAQIPLRSGDGPIVLVLAPTRELCLQIKDVFDE 222

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILV 398
           Y +   +    + G +    +++ +         +++G      D     ++ + ++  +
Sbjct: 223 YCRFFNMRCTAVYGGVSSYTQKRDISMGCE----VVVGCPGRLIDLNEQGALHFNRVTFL 278

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE  R          +K      +++   P  +TL+ ++    ++ ++ E        
Sbjct: 279 VLDEADRMLDMGFEPQLKK------IIVNTNPDRQTLMWSATWPKEVRRLAENYMKNFVQ 332

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHE 512
            T+     + +  I+++  V+   +KA  +   + EKK        N + + +       
Sbjct: 333 LTIGSVELKTNIKIKQIVSVIDSHEKANKLHESLNEKKNEKVIIFANTKRMCDNLEDDLS 392

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                   IHG  S   ++ ++  F++G   +LIAT V   G+D+ + +++I  +  +  
Sbjct: 393 RRGYKAVAIHGDKSQNIRDRIISDFRSGYKNILIATDVAARGLDIKNVALVINYDFPNNI 452

Query: 573 LAQLHQLRGRVGRGEEISS-CILLYHPPLSKNSYTRLSVLKNTE 615
              +H++ GR  RG+         +    S  +   + +LK   
Sbjct: 453 EDYVHRI-GRTARGDVTEGLSHSFFTSENSACAKELVKILKEAN 495


>gi|333030152|ref|ZP_08458213.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332740749|gb|EGJ71231.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 404

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 139/370 (37%), Gaps = 30/370 (8%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + F   T  QE AI  IL++         I     G+GKT   L+ +   +  G   
Sbjct: 16  LDAMNFEESTPIQEKAIPIILENKD------LIAVAQTGTGKTAAFLLPILDKLSEGKHI 69

Query: 323 ----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                 +IM+P   LAQQ  + ++ ++    +    I G        +    +  G A +
Sbjct: 70  PDKVNCIIMSPTRELAQQIDQQMEGFSYFLSVSSVAIYGGSDGIAFEQQKRGLTMG-AEV 128

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA--TPIPRTLV 436
           +I T       +   KL  V + E   F + +  ++        ++ +        +T++
Sbjct: 129 VIATPGRLLSHL---KLGYVDLSEVKHFILDEADRMLDMGFFDDIMQIAQYLPKERQTIM 185

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     I K+ +      P +  +  +++  E I +   V  EG+K   I     + K
Sbjct: 186 FSATMPDKIQKLAQN-ILHNPEEIKL-AVSKPAEKILQAAYVCYEGQKLNIINDLFSKSK 243

Query: 497 ESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     ++ V+      +     +  IH  ++   +E ++ +FK G   +L+ T +
Sbjct: 244 SEKSLVFASSKAKVKEVARALKKMDLKVGEIHSDLNQKTREEMLQNFKAGNIDILVGTDI 303

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           I  GIDV D  ++I  +  +     +H++ GR  R       I   +    +N       
Sbjct: 304 IARGIDVDDIRLVINYDVPNDSEDYVHRI-GRTARANNDGVAITFVNTKDQQNFLEIEDF 362

Query: 611 LKNTEDGFLI 620
           L+   D F I
Sbjct: 363 LEK--DIFKI 370


>gi|218132094|ref|ZP_03460898.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
 gi|217985744|gb|EEC52085.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
          Length = 392

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 155/414 (37%), Gaps = 40/414 (9%)

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
                  + + L   +        +N+   I + I      +PT  Q  AI  +L     
Sbjct: 2   KRAQIILMLMFLAYSKTTFMTFKDLNITESILKAIEEKGYVNPTPIQAKAIPALLVGKD- 60

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIMAPIGILAQQHYEFIKKY 344
                 +     G+GKT    I +   ++A        +A+I+ P   LA Q  E I  Y
Sbjct: 61  -----ILGCAQTGTGKTAAFAIPIIQQLQADKSLNNSIKALILTPTRELALQISECIDDY 115

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVI 399
            + TQ+   +I G + Q  +   L +       I++ T     D      ++   +   +
Sbjct: 116 AKYTQVRHGVIFGGVNQRTQVNMLHK----GVDILVATPGRLLDLMNQGYVRLNNIQHFV 171

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE  R      +   +       LL       +TL+ ++     I  +T     ++P+K
Sbjct: 172 LDEADRMLDMGFIHDIK------RLLPKLPKEKQTLLFSATMPDTIISLTNS-LLKQPVK 224

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEH 513
             I P +   + IE+    + + +K+  +   + + +          +   +R   +   
Sbjct: 225 ISITPKSSTVDAIEQTVYFVEKKEKSKLLISILHKTQGQSVLVFSRTKHNADRIVRVLGK 284

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  IHG  S   ++S +++FK+G  +++IAT +   GID+ +  ++I  +      
Sbjct: 285 AGIGSQAIHGNKSQNARQSALENFKSGKIRVMIATDIAARGIDINELPLVINYDLPDVPE 344

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
             +H++ GR GR     + +       S+     ++ ++    G  ++  +L  
Sbjct: 345 TYVHRI-GRTGRAGNSGTALSFC----SQEERKLVNDIQKLT-GKKLSRAELAI 392


>gi|148709275|gb|EDL41221.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Mus musculus]
          Length = 963

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 306 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 359

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 360 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 419

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 420 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 475

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 476 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 528

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 529 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 588

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 589 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 647

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 648 KGYAYTFITEDQARYAGDIIKALE 671


>gi|327268480|ref|XP_003219025.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 3 [Anolis
           carolinensis]
          Length = 709

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 134/374 (35%), Gaps = 47/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I      K++   +     GSGKT   L+ + + +   G          
Sbjct: 247 PTPVQKYAIPII------KDKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGDALRAMKE 300

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K+   +++   ++ G      + + LER 
Sbjct: 301 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPCVVYGGADIGQQIRDLER- 359

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLM 426
                H+++ T     D ++  K+ L       +DE  R          ++        M
Sbjct: 360 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEKDT--M 414

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
               + +T++ ++    +I  +  +    + I   +  +    E I +  V + +  K  
Sbjct: 415 PPKGVRQTMMFSATFPKEIQMLA-RDFLEEYIFLAVGRVGSTSENITQKVVWVEDSDKRS 473

Query: 487 WICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           ++   ++              +   +           +   IHG  S  D+E  +  F++
Sbjct: 474 FLLDLLDATGKDSLTLVFVETKKGADSLEDFLFREGYACTSIHGDRSQRDREEALHQFRS 533

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++  
Sbjct: 534 GRSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATSFFNER 592

Query: 600 LSKNSYTRLSVLKN 613
               +   L +L  
Sbjct: 593 NINITKDLLDLLVE 606


>gi|296192757|ref|XP_002744211.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Callithrix jacchus]
          Length = 1032

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 427

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 428 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 487

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 488 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 544 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 596

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 597 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 715

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 716 KGYAYTFITEDQARYAGDIIKALE 739


>gi|227550862|ref|ZP_03980911.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
           TX1330]
 gi|257887886|ref|ZP_05667539.1| helicase [Enterococcus faecium 1,141,733]
 gi|257893315|ref|ZP_05672968.1| helicase [Enterococcus faecium 1,231,408]
 gi|293379275|ref|ZP_06625421.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
 gi|227179960|gb|EEI60932.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
           TX1330]
 gi|257823940|gb|EEV50872.1| helicase [Enterococcus faecium 1,141,733]
 gi|257829694|gb|EEV56301.1| helicase [Enterococcus faecium 1,231,408]
 gi|292642071|gb|EFF60235.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
          Length = 503

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 127/346 (36%), Gaps = 35/346 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  Q   I   L           I Q   G+GKT    + M   ++      Q +
Sbjct: 20  GFEEATPIQAETIPLALVGKDV------IGQAQTGTGKTAAFGLPMLEKIDPDRHELQGL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E + +  ++ ++ V+ + G      + + L+     + HI++GT   
Sbjct: 74  VIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLKD----RPHIVVGTPGR 129

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--R 433
             D I  + L L  V        DE    G  + +   ++Q       LL +AT  P  +
Sbjct: 130 MLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQRQTLLFSATMPPAIK 189

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + +  +      KI  K      I    +     ++     ++   +  +   +  +  
Sbjct: 190 NIGVKFMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTPELTIVFGRT- 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+      E        IHG +S   + SV+ SFK+G   +L+AT V   
Sbjct: 249 -------KRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAAR 301

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKGGMSVTFVTPN 346


>gi|254372659|ref|ZP_04988148.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570386|gb|EDN36040.1| ATP-dependent RNA helicase [Francisella novicida GA99-3549]
          Length = 569

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 148/381 (38%), Gaps = 43/381 (11%)

Query: 269 IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM-----AAAVEAGG 322
           + +  PT  Q+ AI  IL           + Q   G+GKT    + +      A+ +   
Sbjct: 25  LGYENPTPIQQYAIPYILSGRDV------LGQAQTGTGKTAAFALPLINNMDLASRDRAP 78

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E  + + +N   + V  I G      + +AL++       +++G
Sbjct: 79  QVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQ----GVKVVVG 134

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I+           L+L   DE  R G    +K      +            +
Sbjct: 135 TTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQC---------Q 185

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ I E+   R P K  +    +    + +  +V+   +K   +   +E
Sbjct: 186 RLLFSATIPTDIADIIEEYL-RNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLE 244

Query: 494 EKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            ++          ++         +     +A I+G M    +E ++D F++    +L+A
Sbjct: 245 TEETDGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVA 304

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V+  GID+   S +I  +  +     +H++ GR GR     + I L      +   T 
Sbjct: 305 TDVVARGIDLERISHVINYDMPNDTDTYVHRI-GRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 608 LSVLKN-TEDGFLIAEEDLKQ 627
                +  ++ F+ + +DL Q
Sbjct: 364 ERFTGSPMQEVFMPSAKDLAQ 384


>gi|23336902|tpg|DAA00076.1| TPA_exp: Prp5-like DEAD-box protein [Homo sapiens]
          Length = 1032

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 427

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 428 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 487

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 488 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 544 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 596

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 597 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 715

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 716 KGYAYTFITEDQARYAGDIIKALE 739


>gi|325953815|ref|YP_004237475.1| DEAD/DEAH box helicase [Weeksella virosa DSM 16922]
 gi|323436433|gb|ADX66897.1| DEAD/DEAH box helicase domain protein [Weeksella virosa DSM 16922]
          Length = 586

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 84/420 (20%), Positives = 156/420 (37%), Gaps = 49/420 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SP+  QE AI  IL      +    I     G+GKT    + +   ++      QA+I+ 
Sbjct: 23  SPSPIQEKAIPQILS-----SDQDVIALAQTGTGKTAAFGLPILNQLDLSQKNVQAIILC 77

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   L  Q  + ++ +  +   + ++ + G      + K L         I++GT     
Sbjct: 78  PTRELCLQIAKEMESFAAHMQGVKIQAVYGGADIVKQIKGLRD----NPQIVVGTPGRTM 133

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D I+   L        +L   DE    G +  +           +L T     +TL+ ++
Sbjct: 134 DLIKRNALKINNITWTVLDEADEMLNMGFRDEI---------DNILETTPEEKQTLLFSA 184

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI------CPQIE 493
               ++ +I  +    KP++  +  +N   + IE    ++    +   +       P I 
Sbjct: 185 TMPREVRRIAAEYM-FKPVEIAVSKVNMASKNIEHQYYMVRASDRYLALKRIADYYPSIY 243

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R   +           +   +HG +S   ++ VMD F+    ++L+AT V   
Sbjct: 244 GIVFCKTRRETKEVADRLMQDGYNADALHGDLSQAQRDFVMDKFRKKNIQILVATDVAAR 303

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GIDV + + +I  +        +H+  GR GR       I++ H   S+       V K 
Sbjct: 304 GIDVNELTHVINYSLPDDPEVYVHR-SGRTGRAGNKGISIIIAH---SREGRKVKDVEK- 358

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE---IARKDAKHILTQD 670
               F+ A  +LK+   GE +  ++       I   E+ D  +E    A  +    L +D
Sbjct: 359 ----FISAPIELKKVPSGEEICERRMFNLIEKIENTEVDDIQIEPYMDAVYEKLQGLDRD 414


>gi|241172335|ref|XP_002410726.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215494955|gb|EEC04596.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 658

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 72/399 (18%), Positives = 142/399 (35%), Gaps = 47/399 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +  +  + + I +     P+  Q   +   +        M+ I     GSGKT   +  M
Sbjct: 187 LGFDEPMLRAIRKAEYTQPSPIQAQGVPVAM----SGRDMIGI--AKTGSGKTAAFIWPM 240

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   +I+AP   LAQQ Y   K++ +   +      G   +  + K
Sbjct: 241 LTHIMDQRELVEGEGPIGLILAPTRELAQQIYLEAKRFGKVYGVGAICCFGGGSKWEQSK 300

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKA 418
           AL+      A I++ T     D I+           L+L   D     G + +++     
Sbjct: 301 ALQE----GAEIVVATPGRMIDLIKMKATNLERVTFLVLDEADRMFDMGFEPQVRSICDH 356

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                      P  +TL+ ++     + ++  +     P+K V   +   +E + ++ +V
Sbjct: 357 VR---------PDRQTLMFSATFKRKVERLA-RDVLTDPVKVVQGDVGEANEDVTQIVLV 406

Query: 479 LSEGK---KAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
           +       K  W+   + E             ++  E   +  +    ++A++HG M   
Sbjct: 407 VPSVPPTTKWNWLTNHLVEFTSVGSVLIFVTKKANAEELAANLKTKDHNVALLHGDMDQN 466

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D+  V+ SFK     +L+AT V   G+D+     ++  +         H++ GR GR  E
Sbjct: 467 DRTKVIASFKKKDFPILVATDVAARGLDIPHVRTVVNYDIARDIDTHTHRV-GRTGRAGE 525

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
                 L      + +   +  L+    G   +  DL  
Sbjct: 526 KGVAYTLITDKEKEFAGHLVRNLEGANQGVPQSLMDLAM 564


>gi|212638043|ref|YP_002314563.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
 gi|212559523|gb|ACJ32578.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
          Length = 471

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 99/446 (22%), Positives = 165/446 (36%), Gaps = 50/446 (11%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
                K +  + F   T  Q + I   LQ+         I Q   G+GKT    I +   
Sbjct: 13  SPELMKAVSKMGFEEATPIQAATIPLSLQNRDV------IGQAQTGTGKTAAFGIPLIEK 66

Query: 318 VEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++      QA+++AP   LA Q  E + K     ++ V  I G      + +AL++    
Sbjct: 67  IDMNNDAVQAIVVAPTRELAIQVSEELYKIGSTKRVRVLPIYGGQDIERQIRALKK---- 122

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLM 426
             HII+GT     D IQ   L L  V        DE    G  + +           +L 
Sbjct: 123 HPHIIVGTPGRILDHIQRRTLRLQHVHTVVLDEADEMLNMGFVEDI---------EAILS 173

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +TL+ ++     I +I E+     P    +         IE+  + + E KK  
Sbjct: 174 HVPTERQTLLFSATMPEPIRRIAERFMN-NPELVRVKAKEMTVPNIEQYYIEIQEKKKFD 232

Query: 487 WICPQIEEKK---ESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNG 540
            +   ++ +       F     R + L E       +   IHG +S   + SV+  FK G
Sbjct: 233 TLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEG 292

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
           +  +L+AT V   G+D+   + +   +      + +H++ GR GR  +    I    P  
Sbjct: 293 SIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKTGMAITFVTPRE 351

Query: 601 SKNSYTRLSVLKNTEDGFLIAEED--LK--QRKEGE-ILGIKQSGMPKF----LIAQPEL 651
               +      K   +       D  L+  QR   E +L   +     F         E 
Sbjct: 352 IGQLHHIEKTTKRKMERMKPPTLDEALEGQQRAAIEKLLATIEHNNLAFYKRAAEELLEE 411

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVR 677
           HDS+  +A      +LT++PD+T V+
Sbjct: 412 HDSVSLVA--ACIKMLTKEPDMTPVQ 435


>gi|89070152|ref|ZP_01157481.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
 gi|89044269|gb|EAR50415.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
          Length = 477

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 141/368 (38%), Gaps = 46/368 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI   L+          +     G+GKT    + M   +  G       +++
Sbjct: 24  TPTPIQEGAIPPALEGRDV------LGIAQTGTGKTASFTLPMITLLHRGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y ++T++   ++ G +    + + +++       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDQLIDK----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     ++VDE  R      +   ++       +   TP   +TL  ++
Sbjct: 134 LLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIER-------IFGLTPFTRQTLFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS------EGKKAYWICPQIE 493
               +I +IT       P +  +       E I +  VV        EG +   +   + 
Sbjct: 187 TMAPEIERITNTFL-SNPERVEVARQASASETIAQHVVVFRPSRKDREGSEKRAVLRAMI 245

Query: 494 EKKESNFRS---------VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           E +  N R+          V+      +      A IHG +    +   +D F++GT + 
Sbjct: 246 ESEGENCRNGIIFCNRKVDVDVVAKSMKKNGYDAAPIHGDLDQSTRMRTLDGFRDGTLRF 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+A+ V   G+D+ + S +   +        +H++ GR GR       +++  P   KN 
Sbjct: 306 LVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRI-GRTGRAGREGRAMMISVPRDDKNL 364

Query: 605 YTRLSVLK 612
                +++
Sbjct: 365 EAIERLIQ 372


>gi|117924939|ref|YP_865556.1| DEAD/DEAH box helicase [Magnetococcus sp. MC-1]
 gi|117608695|gb|ABK44150.1| DEAD/DEAH box helicase domain protein [Magnetococcus sp. MC-1]
          Length = 439

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 132/363 (36%), Gaps = 39/363 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q  AI  +L           +     G+GKT    + +   +            +
Sbjct: 24  TPTPIQAQAIPHLLAGRD------LLGIAQTGTGKTAAFALPILNKLSQIKGRPAPNAPR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q    I  Y ++      ++ G + +  + +AL R       I++ T 
Sbjct: 78  ALILTPTRELASQIGNSIAVYGKHVPTTHTVVFGGVGKQPQIRALSR----GVDILVATP 133

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVL 437
               D      ++  ++ + ++DE  R      +            ++   P  R TL+ 
Sbjct: 134 GRLLDLMGERHVRLDQIQVFVLDEADRMLDMGFIHDI-------RRIIKVIPAKRHTLLF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    DI+++ E      P K  + P +   E I +  + + +  K   +   +E +  
Sbjct: 187 SATMPKDIAELAE-GLLTNPAKVEVTPESTTVERITQKVLFVDKQNKRSLLKNVLEHESI 245

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +    R     +    + A IHG  S   +E  +D F+ G  K+L+AT + 
Sbjct: 246 EQVLVFTRTKHGANRVAEYLDKHRIASAAIHGNKSQSAREKALDGFRKGKLKVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV   S +I  +  +   + +H++ GR  R     + I                 +
Sbjct: 306 ARGIDVAGISHVINFDLPNESESYVHRI-GRTARAGRDGNAISFCDAEERGYLLDIEKTI 364

Query: 612 KNT 614
           + T
Sbjct: 365 RQT 367


>gi|221482870|gb|EEE21201.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii GT1]
          Length = 1042

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 90/287 (31%), Positives = 142/287 (49%), Gaps = 8/287 (2%)

Query: 141 PHYIFH-NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSF 199
           P      NS+ V+   +  +Y   +G+   + +  I   L R     E + + L +K+  
Sbjct: 43  PDIRTQTNSEHVHVHKLMPIYPSISGVPAKILRAGIETLL-RENSFAEVVPEFLRKKRGI 101

Query: 200 PSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVE 258
             +      +H+P+  +D      AR  L Y  +L  Q+A  L  ++ + +  G      
Sbjct: 102 ERLDTTLRALHHPQTLEDV---RKARRDLFYSTMLWLQLAKKLRTREVESQFRGYASRTG 158

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
            +I Q    ++ FS T SQ  AI++I  DM     M R+LQGDVGSGKT VA +A+  + 
Sbjct: 159 EEILQAFYASLNFSLTPSQLQAIEEIRADMESPRPMRRLLQGDVGSGKTAVAAVALLLSA 218

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            AG QA ++AP   LA+QH   ++K+       V ++  ++P       +  I  G A I
Sbjct: 219 SAGHQAALLAPTAALARQHQINLQKFLGPLGFHVHLLVSDIPDKD--ATIRLINTGNAEI 276

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
            +GTHAL QD + + +L LV++DEQH+FGV QR KL  K      ++
Sbjct: 277 TVGTHALLQDYVLFPRLGLVVIDEQHKFGVNQRWKLLLKRHRHEEII 323



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/184 (38%), Positives = 102/184 (55%), Gaps = 9/184 (4%)

Query: 505 ERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +RF  L +      I ++HGRM   +K  V+   + GT  LL+ATTV+EVGIDV +AS+I
Sbjct: 648 QRFEELRKLLPEIRIRLLHGRMKAEEKNEVLSELRGGTVDLLVATTVVEVGIDVPNASVI 707

Query: 564 IIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHP---PLSKNSYTRLSVLKNTEDGFL 619
           +I++AE FGL QLHQLRGRVGR     S C ++  P    L + +  R + +  T DGF 
Sbjct: 708 VIDSAERFGLTQLHQLRGRVGRDARHPSFCFIILDPLKKNLDEKAMHRFAAIAATTDGFQ 767

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLI---AQPELHDSLLEIARKDAKHILT-QDPDLTS 675
           +AE D + R  G + G +Q G     +    +      LLE A +D+ HI+   D D  +
Sbjct: 768 LAETDARLRGGGTLFGRQQHGQSDLWMIHGLKRSEQTRLLEAATEDSDHIVELLDGDEAN 827

Query: 676 VRGQ 679
            R +
Sbjct: 828 SRYE 831


>gi|254472453|ref|ZP_05085853.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
           JE062]
 gi|211958736|gb|EEA93936.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
           JE062]
          Length = 453

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 139/372 (37%), Gaps = 42/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  QE+AI  IL           +     G+GKT    + +   +            +
Sbjct: 24  EPTPIQENAIPYILDGKD------LLGLAQTGTGKTAAFAVPLLQRLLESRYRAAPKSVR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           ++I+ P   LA Q  + IK Y   T++    + G +P   +  AL+R       +++ T 
Sbjct: 78  SLILTPTRELADQITKNIKAYAGRTKMYTSCVVGGVPFPPQFHALQR----GLDVLVATP 133

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D      + + +L + ++DE       Q L L   A    +  +      +TL  +
Sbjct: 134 GRLLDLHRKNGVSFDELEIFVLDEAD-----QMLDLGFIAELEEIAYLL-PKKRQTLFFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    +I  ++E+     P++    P     E + +    L +  K   +   +E+ +  
Sbjct: 188 ATMPREIRDLSERFLT-NPVEVSTAPPATTVETVTQQIAHLEKDAKFPLLKELLEKDECE 246

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +    R  +           IHG MS  +++  +D FK G  K L+AT V  
Sbjct: 247 RALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLKTLVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GIDV D S +I  +  +     +H++ GR  R  +  + I    P           ++ 
Sbjct: 307 RGIDVSDISHVINFDMPNATENYVHRI-GRTARAGKSGTAITFCLPEDRGMLRAIQKLI- 364

Query: 613 NTEDGFLIAEED 624
               G  IAE D
Sbjct: 365 ----GKKIAEMD 372


>gi|145300478|ref|YP_001143319.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853250|gb|ABO91571.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 417

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 138/374 (36%), Gaps = 40/374 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
               Q+ L  + ++ PT  Q  AI  IL           +     G+GKT   ++ +   
Sbjct: 12  SPRLQQTLSELGYAAPTPIQARAIPVILTGRD------LMAGAQTGTGKTAAFVLPLLEQ 65

Query: 318 VEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +            +A+++ P   LA Q ++ + +Y Q T +   ++ G +  A + +AL+
Sbjct: 66  LMQHPASDTARPIRALVLVPTRELAVQVFDSVVRYGQGTGLTSALVYGGVSIAAQVEALQ 125

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKAT 419
                   ++I T     D ++   L L  +        D     G    +K  L Q   
Sbjct: 126 A----GVDLLIATPGRLLDHLRQGALSLEHLSHLVFDEADRMLDMGFMDEIKALLKQIPA 181

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKV 477
               LL +AT       L+ +   D   I   P       ++  +  ++   +V     +
Sbjct: 182 DRQTLLFSATCDDNLFALSRVLLRDPELIEVAPRNTTAAEVEQRVYAVDGERKVALVEHL 241

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           +  +G     I  +         R   ++          +    HG +S   +E V+ +F
Sbjct: 242 IKVKGWAPVLIFSRT--------RQGADKLAQQLGKAGINALAFHGDLSQGAREKVLLAF 293

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + GT + L+AT V   G+D++D + +I           +H++ GR GR       I L+ 
Sbjct: 294 RAGTLQALVATDVAARGLDILDLNYVINLEFPFVAEDYVHRI-GRTGRAGNKGLAITLFS 352

Query: 598 PPLSKNSYTRLSVL 611
           P  +       +VL
Sbjct: 353 PEDAPLLEKVEAVL 366


>gi|194337138|ref|YP_002018932.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309615|gb|ACF44315.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 418

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 132/374 (35%), Gaps = 27/374 (7%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            + +   I Q +      +PT  Q  AI  ILQ          +     G+GKT    I 
Sbjct: 5   SLEIIDPILQALQEEGYTTPTPIQAEAIPIILQG------TDLLGCAQTGTGKTAAFAIP 58

Query: 314 MAAAVEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
           +   +            + +I+ P   LA Q  E    Y ++T +   +I G + Q  + 
Sbjct: 59  ILQLLSENKVYDKKRKIRTLIVTPTRELAIQIGESFNAYGRHTGLTNTVIFGGVNQNPQT 118

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
            AL R       I+I T     D +    L L  V E        R+           +L
Sbjct: 119 AALIR----GVDIVIATPGRLLDLLNQGFLSLRHV-EILVLDEADRMLDMGFIHDIKKIL 173

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
                  ++L  ++    +I K+        P K  + P++   E+I +    + +G K 
Sbjct: 174 AVVPKQKQSLFFSATMPAEIVKLAAT-ILHNPSKVSVTPVSSTVEIINQSIYFVDKGNKN 232

Query: 486 YWICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +   + ++        +  +   ++   + E        IHG  +   ++  + +FK 
Sbjct: 233 SLLVDILRDQAIKTALVFTRTKHGADKVVKILEKHNIKAEAIHGNKAQNARQRALFNFKA 292

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            T ++L+AT +   GIDV D   +I     +     +H++ GR GR     + +      
Sbjct: 293 QTTRVLVATDIAARGIDVDDLEYVINFEMPNIAETYVHRI-GRTGRAGAKGTALSFCDAE 351

Query: 600 LSKNSYTRLSVLKN 613
             +       ++  
Sbjct: 352 EKEYLRDIEKLIAK 365


>gi|326569194|gb|EGE19255.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC7]
          Length = 581

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 129/351 (36%), Gaps = 22/351 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA------AVEAGGQAV 325
           +PT  Q  AI   L           +L    GSGKT   ++ +         +E   QA+
Sbjct: 40  TPTPIQAKAIPHALNGRD------LLLSAQTGSGKTAAFVLPVLDKMSRKPTIEKHVQAL 93

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           I+ P   LA Q  + +++Y    + +  + + G  P   + +AL++       +II T  
Sbjct: 94  ILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKK----GVQVIIATPG 149

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D ++  ++ L  +D         R+     A     +L       +T++ ++  D  
Sbjct: 150 RLIDHMREGRVDLSKLD-MLILDEADRMLDMGFADDIKEILQNTPQTRQTVMSSATWDGA 208

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
           + KI E         ++ +    IDE +        +      +    + K+   F   +
Sbjct: 209 VGKIAESFTVNPEKVSIKVESAHIDESVYYCDDFNHKNNILLQVLNNPKIKQAVIFAATK 268

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              E+  +           +HG +    +  ++   K+G C +L+AT V   GID+   S
Sbjct: 269 MSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARGIDISAIS 328

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +I  +        +H++ GR GR       + L     ++        LK
Sbjct: 329 HVINYDLPRQVEDYVHRI-GRCGRAGRTGVAVNLCSIDDNRQLEHINRYLK 378


>gi|326561884|gb|EGE12219.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 7169]
 gi|326563318|gb|EGE13585.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 46P47B1]
 gi|326565972|gb|EGE16133.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 103P14B1]
 gi|326568894|gb|EGE18963.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC1]
 gi|326571867|gb|EGE21872.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC8]
 gi|326575379|gb|EGE25304.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 101P30B1]
 gi|326576534|gb|EGE26442.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis CO72]
          Length = 581

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 129/351 (36%), Gaps = 22/351 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA------AVEAGGQAV 325
           +PT  Q  AI   L           +L    GSGKT   ++ +         +E   QA+
Sbjct: 40  TPTPIQAKAIPHALNGRD------LLLSAQTGSGKTAAFVLPVLDKMSRKPTIEKHVQAL 93

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           I+ P   LA Q  + +++Y    + +  + + G  P   + +AL++       +II T  
Sbjct: 94  ILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKK----GVQVIIATPG 149

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D ++  ++ L  +D         R+     A     +L       +T++ ++  D  
Sbjct: 150 RLIDHMREGRVDLSKLD-MLILDEADRMLDMGFADDIKEILQNTPQTRQTVMSSATWDGA 208

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
           + KI E         ++ +    IDE +        +      +    + K+   F   +
Sbjct: 209 VGKIAESFTVNPEKVSIKVESAHIDESVYYCDDFNHKNNILLQVLNNPKIKQAVIFAATK 268

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              E+  +           +HG +    +  ++   K+G C +L+AT V   GID+   S
Sbjct: 269 MSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARGIDISAIS 328

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +I  +        +H++ GR GR       + L     ++        LK
Sbjct: 329 HVINYDLPRQVEDYVHRI-GRCGRAGRTGVAVNLCSIDDNRQLEHINRYLK 378


>gi|317051368|ref|YP_004112484.1| DEAD/DEAH box helicase domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316946452|gb|ADU65928.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
           S5]
          Length = 488

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 128/344 (37%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  Q++ I  +L        +  + Q   G+GKT    + +   V+      QA+I+ 
Sbjct: 30  KPTSIQKACIPLVLH-----QHVDVVGQAQTGTGKTAAFGLPIIETVKPERRQIQALILT 84

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I     + ++ +  + G      + + L R      HI +GT    QD
Sbjct: 85  PTRELALQVADEITSLCGSMKLDIATLYGGQSIGLQIQKLRR----GVHIAVGTPGRIQD 140

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I    L L  +        DE    G  + ++   + T             R L+ ++ 
Sbjct: 141 LIDRGNLDLSHLEYVVLDEADEMLNMGFIEDIENILQHTPAE---------KRMLLFSAT 191

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I  + ++         V     +   + +++   + E  K   +C  I+   +   
Sbjct: 192 MPRPILNLAKRYM-STYEHVVAEQTQKTTSLTDQIYYEVREADKFEALCRVIDITPDFYG 250

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +   +      +H       +HG +S   +E ++D+F+     +L+AT V   G
Sbjct: 251 VVFCRTKVDADEITRRLQHRKYVTEALHGDVSQNQREKILDAFRRKRLNILVATDVAARG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           IDV + + +I  +      + +H++ GR GR  +  + I    P
Sbjct: 311 IDVQNLTHVINFSLPQSPESYVHRV-GRTGRAGKEGTAITFISP 353


>gi|41327773|ref|NP_055644.2| probable ATP-dependent RNA helicase DDX46 [Homo sapiens]
 gi|332821955|ref|XP_517939.3| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Pan
           troglodytes]
 gi|116241326|sp|Q7L014|DDX46_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46; AltName: Full=PRP5 homolog
 gi|15126766|gb|AAH12304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapiens]
 gi|119582645|gb|EAW62241.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_d [Homo
           sapiens]
          Length = 1031

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 427

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 428 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 487

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 488 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 544 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 596

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 597 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 715

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 716 KGYAYTFITEDQARYAGDIIKALE 739


>gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
 gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
 gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
          Length = 487

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 80/368 (21%), Positives = 141/368 (38%), Gaps = 38/368 (10%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---A 320
           +L NI F  PT+ Q  AI  IL+          +     G+GKT    +     ++    
Sbjct: 17  LLENIGFEKPTEIQSKAIPAILEGRDV------VGLSQTGTGKTAAYSLPFLEKIDLEQK 70

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             Q +I+ P   LA Q  + +K++  + ++ V  + G      + ++L++      HI++
Sbjct: 71  TVQGLILTPTRELAVQVTQSLKEFAVDRRLWVLTVCGGQSMERQIRSLQK----GVHIVV 126

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATP 430
           GT     D ++  KL        +L   DE    G     +  L Q       +  +AT 
Sbjct: 127 GTPGRVIDLLERGKLSFEELRWAVLDEADEMLSMGFIDDVKKILRQSPKTRQTVCFSATM 186

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAY 486
            P  R LV   L D     I +       I   +  IP            + ++  + A 
Sbjct: 187 PPAIRDLVENFLNDPINITIKQPQVTPDRIAQEVYMIPRGWSKTKALLPILEMANPESAI 246

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                         R+  E  N L E    S    HG ++   +E ++  FK+G  K+++
Sbjct: 247 IFVRT--------KRTASELTNELVEAGQ-SADEYHGDLNQNQREKLVRRFKDGKIKMIV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT +   G+DV + S +I  +      + +H++ GR GR  +  + I L  P   +    
Sbjct: 298 ATDIAARGLDVENLSHVINFDLPDNTESYIHRI-GRTGRAGKTGTAIALVEPSDRRLLRQ 356

Query: 607 RLSVLKNT 614
               +K +
Sbjct: 357 IERRVKQS 364


>gi|219851679|ref|YP_002466111.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
           E1-9c]
 gi|219545938|gb|ACL16388.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
           E1-9c]
          Length = 550

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/376 (19%), Positives = 135/376 (35%), Gaps = 43/376 (11%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  Q+ + ++ F  PT  Q+ AI  I Q          I Q   G+GKT    I     
Sbjct: 35  SKEIQRAIVDLGFEEPTPIQQMAIPLIHQGFDV------IGQAQTGTGKTAAFGIPTLEK 88

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAH 373
           ++      QA+I++P   L  Q  E + K  +    I +  I G  P   +  AL R   
Sbjct: 89  IDPLDKHVQALILSPTRELTIQIAEELSKLARYRRGIAILPIYGGQPIERQFDALRR--- 145

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLL 425
               ++IGT     D ++   L+   V        DE    G +  ++L  K T      
Sbjct: 146 -GVQVVIGTPGRVMDHMRRGTLVFDHVKTVVLDEADEMLDMGFRDDIELILKTTPSD--- 201

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
                  +T + ++     I ++T++   + P    +         +E++   + E  K 
Sbjct: 202 ------RQTTLFSATMSQPILELTKRF-QKSPKMVKVTHKELTVAAVEQIYYEVRESLKL 254

Query: 486 YWICPQIE------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +   ++           N +  V+      +    +   +HG +    ++ VM  F++
Sbjct: 255 EALARLLDIYNPKLTLIFCNTKRRVDELVGQLQVRGYAAEALHGDLKQSQRDRVMGRFRS 314

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   GIDV D   +   +        +H++ GR GR              
Sbjct: 315 GGIDILVATDVAARGIDVDDIEAVFNYDIPQDEEYYVHRI-GRTGRAGRTGRAFTFVS-- 371

Query: 600 LSKNSYTRLSVLKNTE 615
             K  +    + + T 
Sbjct: 372 -GKEIWKIRDIQRYTN 386


>gi|194015931|ref|ZP_03054546.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Bacillus pumilus ATCC 7061]
 gi|194012286|gb|EDW21853.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Bacillus pumilus ATCC 7061]
          Length = 496

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 156/443 (35%), Gaps = 44/443 (9%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   K +  + F   T  Q   I   LQ+         I Q   G+GKT    I +   
Sbjct: 11  SESLMKAINRMGFEEATPIQAETIPLGLQNKDV------IGQAQTGTGKTAAFGIPLVEK 64

Query: 318 VEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++      QA+I+AP   LA Q  E + K  Q+ +  V  I G      + ++L++    
Sbjct: 65  IDPASPNIQAIIIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRSLKK---- 120

Query: 375 QAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
             HII+GT     D I            ++L   DE    G  + +   L+   +    L
Sbjct: 121 NPHIIVGTPGRLLDHINRRTMRLQNVETVVLDEADEMLNMGFIEDIESILSNVPSEHQTL 180

Query: 425 LMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           L +AT   PI R +    + + +  K+  K      I+   + I+   +     +++  +
Sbjct: 181 LFSATMPAPIKR-IAERFMTNPEHVKVKAKEMTVSNIQQFYLDIHERKKFDTLTRLLDIQ 239

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
             +   +  +         +  V+           +   IHG ++   +   +  FK G+
Sbjct: 240 SPELSIVFGRT--------KRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGS 291

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   G+D+   + +   +      + +H++ GR GR       +    P   
Sbjct: 292 IDVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRI-GRTGRAGRTGMAVTFITPREK 350

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL--HDSLLE-- 657
                     K   D       D     + ++   +   +         +     LLE  
Sbjct: 351 DMLRAIEQTTKRKMDRMKEPTLDEAIEGQQQVTIDRLRTIISENNLNFYMTAAAELLEDH 410

Query: 658 ---IARKDAKHILTQDPDLTSVR 677
                   A  ++T++PD T VR
Sbjct: 411 DSVTVVAAAIKMMTKEPDATPVR 433


>gi|154150192|ref|YP_001403810.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Methanoregula boonei 6A8]
 gi|153998744|gb|ABS55167.1| DEAD/DEAH box helicase domain protein [Methanoregula boonei 6A8]
          Length = 532

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 129/373 (34%), Gaps = 40/373 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K   K + N+ F  PT  Q  AI  I              Q   G+GKT    I +   
Sbjct: 13  SKEIAKAIENMGFEEPTPIQALAIPLIQAGRDVT------AQAQTGTGKTSAFGIPVIEN 66

Query: 318 VEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAH 373
           ++A     Q +++ P   LA Q  E           I  + + G  P   + KAL     
Sbjct: 67  IDASQRVVQVIVLCPTRELAIQIAEEFSHLLAYLPKISVLPVYGGQPIERQLKALAN--- 123

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLL 425
              HI+IGT     D ++   L L  V        D+    G +  ++L  K        
Sbjct: 124 -GVHIVIGTPGRVMDHLKRRTLSLDHVSMVVLDEADQMLDMGFRDDIELILKRVPQK--- 179

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
                  +TL+ ++     I +I+++    +P    +         IE+  + + +  K 
Sbjct: 180 ------RQTLLFSATLPKPIIEISKRFQN-RPEFVRVEYQELTVPAIEQSYIEVRDRDKL 232

Query: 486 YWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +C  I+           N +   E               +HG M    ++ VM  F+ 
Sbjct: 233 DSLCRVIDVVDPQLAIIFCNTKRGAEDLAGRIRARGYRAEELHGDMKQSQRDRVMGGFRK 292

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GT  +LIAT V   GIDV D  ++I  +        +H++ GR GR  +    I      
Sbjct: 293 GTIDILIATDVAARGIDVEDVDMVINYDVPQDVDYYIHRI-GRTGRAGKSGRAITFVTSR 351

Query: 600 LSKNSYTRLSVLK 612
                      +K
Sbjct: 352 DFTKLREIQKYIK 364


>gi|219669142|ref|YP_002459577.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
 gi|219539402|gb|ACL21141.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 530

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 67/335 (20%), Positives = 125/335 (37%), Gaps = 21/335 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA---VIMA 328
            P+  Q++AI   +        +  I Q   G+GKT    I +   V    QA   +I+ 
Sbjct: 29  EPSPIQKAAIPVAMDG------VDLIGQAQTGTGKTAAFGIPICEKVNPKFQAVQALILT 82

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I K  +   I    I G      + +AL       + +++GT     D
Sbjct: 83  PTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALRF----GSQVVVGTPGRILD 138

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +    L L  V         + L +        +L        + ++ ++    +I K+
Sbjct: 139 HLNRGTLKLQYVKMVVLDEADEMLDMGFVEDIETILKQVPKEERQVMLFSATMPPEIKKL 198

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---KESNFRSVVE 505
            +     +P    +        +IE++     +  K   +C  I+ +   +   F     
Sbjct: 199 AQNYM-HQPKSVAVSRDELTVPLIEQVFYEARDKIKVDALCRIIDMEDIGQAIIFCRTKR 257

Query: 506 RFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             + L     +       +HG +S   ++ VM  F++G  +LL+AT V   G+D+ + + 
Sbjct: 258 GVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLVATDVAARGLDIDNVTH 317

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +I  +      + +H++ GR GR       I L  
Sbjct: 318 VINFDIPQDPESYVHRI-GRTGRAGRKGQAITLVS 351


>gi|312373386|gb|EFR21141.1| hypothetical protein AND_17503 [Anopheles darlingi]
          Length = 615

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/376 (19%), Positives = 131/376 (34%), Gaps = 39/376 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  AI   L           I     GSGKT   L  M   +          G  
Sbjct: 113 QPTPIQAQAIPAALGGRD------IIGIAKTGSGKTAAFLWPMLVHIMDQRELGPGDGPI 166

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   L+ Q Y   KK+ +   I V    G   +  + KALE+     A I++ T 
Sbjct: 167 GLILAPTRELSLQIYGEAKKFGKVYNISVCCCYGGGSKWEQSKALEQ----GAEIVVATP 222

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPR 433
               D ++           L+L   D+    G + +++            LL +AT   R
Sbjct: 223 GRMIDMVKMKATNLRRVTYLVLDEADKMFNMGFEPQVRSICNHIRPDRQTLLFSATFKKR 282

Query: 434 TLVLTSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L      D  +I   +       +   ++ +  +      L   L +      +   
Sbjct: 283 VEKLARDVLTDPVRIIHGDLGEANADVAQRVVLLPNVQAKWNWLLANLVQMLSEGSVLIF 342

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           + +K ++   +   R         + + ++HG M   ++ SV+  FK     +++AT V 
Sbjct: 343 VTKKADAEQVANSLRVKE------NEVVLLHGDMDQSERNSVITRFKRREVDMMVATDVA 396

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     ++  +         H++ GR GR  E  +   L      + S   +  L
Sbjct: 397 ARGLDIPHIRTVVNYDIARDIDTHTHRI-GRTGRAGEKGTAYTLITDKDKEFSGHLVRNL 455

Query: 612 KNTEDGFLIAEEDLKQ 627
           +       + EE LK 
Sbjct: 456 EGANQ--EVPEELLKL 469


>gi|119895518|ref|XP_586902.3| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
 gi|297477226|ref|XP_002689237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
 gi|296485325|gb|DAA27440.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
          Length = 1031

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 427

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 428 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 487

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 488 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 544 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 596

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 597 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 715

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 716 KGYAYTFITEDQARYAGDIIKALE 739


>gi|291326441|ref|ZP_06124507.2| ATP-dependent RNA helicase RhlE [Providencia rettgeri DSM 1131]
 gi|291314194|gb|EFE54647.1| ATP-dependent RNA helicase RhlE [Providencia rettgeri DSM 1131]
          Length = 442

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 140/370 (37%), Gaps = 39/370 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EA 320
           +  + +  PT  Q+ AI  +L           +     G+GKT    + +   +     +
Sbjct: 17  INELGYESPTPIQQQAIPAVLAG------NDLLASAQTGTGKTAGFTLPILQKLITTPRS 70

Query: 321 GG-----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
           G      +A+I+ P   LA Q  E +K+Y+++ +I   ++ G +    +   L     G 
Sbjct: 71  GKDRKPIRALILTPTRELAAQVAENVKEYSRHLRIRSFVVFGGVSINPQMMKLR----GG 126

Query: 376 AHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
             I+I T     D     ++   ++ + ++DE  R      +           ++     
Sbjct: 127 VDILIATPGRLLDLEHQNAVDLSQVEVFVLDEADRMLDMGFIHDI------RRVINKLPK 180

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + L+ ++    +I ++  K     P+   + P N   E + +   ++ + +KA  +  
Sbjct: 181 KRQNLLFSATFSDEIKQLANKLLN-NPVTIEVAPRNSASEQVAQYVHLVDKKRKAELLSF 239

Query: 491 QIEEKKESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            I  +       F       N L EH        A IHG  S   +   +  FK+G  ++
Sbjct: 240 MIGRENWQQVLVFTRTKHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDIRV 299

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT +   G+D+     ++     +     +H++ GR GR E     + L     +K  
Sbjct: 300 LVATDIAARGLDIEQLPYVVNFELPNVAEDYVHRI-GRTGRAEATGMAVSLVCIDEAKLL 358

Query: 605 YTRLSVLKNT 614
                +LK +
Sbjct: 359 KDIEKLLKKS 368


>gi|332978670|gb|EGK15368.1| ATP-dependent RNA helicase RhlE [Psychrobacter sp. 1501(2011)]
          Length = 519

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 127/358 (35%), Gaps = 34/358 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVI 326
           PT  Q  +I   L           +L    GSGKT   ++ M   +            VI
Sbjct: 63  PTPIQAQSIPPALAGRD------LLLSAQTGSGKTAAFVLPMLDKIIRDKATNKVVHTVI 116

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           + P   LA Q  + +++Y+  T+ I  + + G  P   + +AL +       III T   
Sbjct: 117 LTPTRELANQVSDSVRQYSSKTRNIFSVPLVGGAPYGGQIRALNK----GVQIIIATPGR 172

Query: 386 FQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
           F D      I   +L ++I+DE  R          +K       +M+A P   +T++ ++
Sbjct: 173 FIDHMNSGRIDLSELDILILDEADRMLDMGFADDIEK-------VMSAAPKSRQTIMCSA 225

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D  + KI            +      IDE +        + +    +  Q +  +   
Sbjct: 226 TWDGPVGKIAASFTNNPERIDIKAETKHIDESVYYADDFNHKNRILDHLLTQKDVNQAII 285

Query: 500 F---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F   +   E      +      + +HG +    +  +++  K G   +L+AT V   GID
Sbjct: 286 FAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRTRIINDVKAGKISILVATDVAARGID 345

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           V   + +   +        +H++ GR GR       I +               LK T
Sbjct: 346 VSGITHVFNYDLPRQTEDYVHRI-GRSGRAGRTGIAINICSIDDRPQLDAINRYLKRT 402


>gi|301754307|ref|XP_002912967.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Ailuropoda melanoleuca]
          Length = 1031

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 427

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 428 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 487

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 488 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 544 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 596

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 597 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 715

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 716 KGYAYTFITEDQARYAGDIIKALE 739


>gi|73971268|ref|XP_531911.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Canis familiaris]
 gi|194219918|ref|XP_001918233.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX46
           (DEAD box protein 46) (PRP5 homolog) [Equus caballus]
          Length = 1031

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 427

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 428 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 487

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 488 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 544 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 596

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 597 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 715

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 716 KGYAYTFITEDQARYAGDIIKALE 739


>gi|24372485|ref|NP_716527.1| ATP-dependent RNA helicase DbpA [Shewanella oneidensis MR-1]
 gi|24346478|gb|AAN53972.1|AE015534_11 ATP-dependent RNA helicase DbpA [Shewanella oneidensis MR-1]
          Length = 458

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 73/437 (16%), Positives = 154/437 (35%), Gaps = 57/437 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
             T  Q  ++  IL           I QG  GSGKT    + +   ++      Q +++ 
Sbjct: 23  EMTPIQAQSLPAILAGEDV------IGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLC 76

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+   +    + V  + G +P   +  +LE      AHII+GT     
Sbjct: 77  PTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEH----GAHIIVGTPGRIV 132

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +   +L L  +          R+           ++  +    +TL+ ++     I  
Sbjct: 133 DHLDRNRLDLSNL-NMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATFPEQIQS 191

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFR 501
           I  K     P+       +  + + +    +  +  +   +   + E K        N +
Sbjct: 192 IA-KQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHKPESAVVFCNTK 250

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              ++     E    S+  +HG +   D++  +  F N +  +L+AT V   G+D+    
Sbjct: 251 RETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALD 310

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK------------------- 602
            +   +  +     +H++ GR GR     +    Y+                        
Sbjct: 311 AVFNYHVAYDTEVHIHRI-GRTGRAGSKGAAYTFYNDQDGYKIALLEEYLDREITSESLP 369

Query: 603 ------NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPEL--H 652
                 ++    +++    DG        ++ + G+ILG     +G+    + +  +  +
Sbjct: 370 SLSLLGSAPNAPTMITLQIDGGKK-----EKLRPGDILGALTGDNGIEGTQVGKILVTDY 424

Query: 653 DSLLEIARKDAKHILTQ 669
            + + + RK AK  L++
Sbjct: 425 RAYVAVNRKVAKKALSK 441


>gi|326429718|gb|EGD75288.1| DEAD/H box polypeptide 3 [Salpingoeca sp. ATCC 50818]
          Length = 710

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 132/382 (34%), Gaps = 43/382 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ +I  +        R   +     GSGKT   L+ + + V             
Sbjct: 240 KPTPVQKYSIPIVTA------RRDLMACAQTGSGKTAAFLVPIISRVLETGPVEVPETAR 293

Query: 319 -EAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
              G Q    +I+AP   LA Q +   +K+    +I    + G      + + L+R    
Sbjct: 294 RMEGKQFPVCLILAPTRELASQIFAEARKFAYRAKIRACCVYGGTDFRSQFRDLQR---- 349

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
              +++ T     D ++  ++ +  +     DE  R          ++        M   
Sbjct: 350 GCQVLVATPGRLVDLLERGRIGMDAIRFLVLDEADRMLDMGFEPQIRRIVEQDT--MPPP 407

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            + +TL+ ++    DI  +  +      +   +  I    E I +    + E +K   + 
Sbjct: 408 GVRQTLMFSATFPKDIQVLA-RDFLHDCVSISVGRIGSTTENIFQKVYWVQEHEKRQTLL 466

Query: 490 PQIEEKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             I    E          +   +       H     + IHG  +   +E  + SF++G  
Sbjct: 467 DLISAASEKELVLVFVETKRGADALEDFLIHQQFPASSIHGDRTQEQRERALASFRDGYT 526

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ +   +I  +        +H++ GR GR       I  ++   + 
Sbjct: 527 PILVATAVAARGLDIPNVKRVINFDLPSDIDEYVHRI-GRTGRVGHKGQAISFFNDKNAN 585

Query: 603 NSYTRLSVLKNTEDGFLIAEED 624
            +   L  L+  +       ED
Sbjct: 586 VARDLLDTLRECKQEVPDWLED 607


>gi|237840713|ref|XP_002369654.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii ME49]
 gi|211967318|gb|EEB02514.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii ME49]
 gi|221503338|gb|EEE29036.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii VEG]
          Length = 1042

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 90/287 (31%), Positives = 142/287 (49%), Gaps = 8/287 (2%)

Query: 141 PHYIFH-NSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKKSF 199
           P      NS+ V+   +  +Y   +G+   + +  I   L R     E + + L +K+  
Sbjct: 43  PDIRTQTNSEHVHVHKLMPIYPSISGVPAKILRAGIETLL-RENSFAEVVPEFLRKKRGI 101

Query: 200 PSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KEIGIPINVE 258
             +      +H+P+  +D      AR  L Y  +L  Q+A  L  ++ + +  G      
Sbjct: 102 ERLDTTLRALHHPQTLEDV---RKARRDLFYSTMLWLQLAKKLRTREVESQFRGYASRTG 158

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
            +I Q    ++ FS T SQ  AI++I  DM     M R+LQGDVGSGKT VA +A+  + 
Sbjct: 159 EEILQAFYASLNFSLTPSQLQAIEEIRADMESPRPMRRLLQGDVGSGKTAVAAVALLLSA 218

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            AG QA ++AP   LA+QH   ++K+       V ++  ++P       +  I  G A I
Sbjct: 219 SAGHQAALLAPTAALARQHQINLQKFLGPLGFHVHLLVSDIPDKD--ATIRLINTGNAEI 276

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
            +GTHAL QD + + +L LV++DEQH+FGV QR KL  K      ++
Sbjct: 277 TVGTHALLQDYVLFPRLGLVVIDEQHKFGVNQRWKLLLKRHRHEEII 323



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/184 (38%), Positives = 102/184 (55%), Gaps = 9/184 (4%)

Query: 505 ERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           +RF  L +      I ++HGRM   +K  V+   + GT  LL+ATTV+EVGIDV +AS+I
Sbjct: 648 QRFEELRKLLPEIRIRLLHGRMKAEEKNEVLSELRGGTVDLLVATTVVEVGIDVPNASVI 707

Query: 564 IIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHP---PLSKNSYTRLSVLKNTEDGFL 619
           +I++AE FGL QLHQLRGRVGR     S C ++  P    L + +  R + +  T DGF 
Sbjct: 708 VIDSAERFGLTQLHQLRGRVGRDARHPSFCFIILDPLKKNLDEKAMHRFAAIAATTDGFQ 767

Query: 620 IAEEDLKQRKEGEILGIKQSGMPKFLI---AQPELHDSLLEIARKDAKHILT-QDPDLTS 675
           +AE D + R  G + G +Q G     +    +      LLE A +D+ HI+   D D  +
Sbjct: 768 LAETDARLRGGGTLFGRQQHGQSDLWMIHGLKRSEQTRLLEAATEDSDHIVELLDGDEAN 827

Query: 676 VRGQ 679
            R +
Sbjct: 828 SRYE 831


>gi|318606043|emb|CBY27541.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 460

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 87/460 (18%), Positives = 177/460 (38%), Gaps = 60/460 (13%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + ++  T  Q +A+  IL     +       +   GSGKT    I +   +  G   
Sbjct: 19  LNELGYTEMTPVQAAALPAILNGQDVR------AKAKTGSGKTAAFGIGLLDKIAVGEFV 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  + TQ I +  + G  P  H+  +L        HI++
Sbjct: 73  TQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHA----PHIVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L+L  + +        R+       A   ++    P  +TL+ ++ 
Sbjct: 129 GTPGRIQEHLRKKTLVLDDL-KILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I +I+ +   R+P+   +   +     IE++    +  K+   +   +   +    
Sbjct: 188 YPAGIEQISAR-VQRQPVNVEVDDGDEAP-AIEQVFFETTREKRLPLLISVLSHYQPASC 245

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +      E    S+  +HG +   D++ V+  F N +C++L+AT V   G
Sbjct: 246 VVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN- 613
           +D+ D  +++           +H++ GR GR       + L  P     ++     L+  
Sbjct: 306 LDIKDLELVVNFELAFDPEVHVHRI-GRTGRAGMSGLAVSLCTPQEMTRAHAIEDYLQMK 364

Query: 614 ------------------------TEDGFLIAEEDLKQRKEGEILG--IKQSGMPKFLIA 647
                                     DG   A    K R  G+ILG    ++G+    + 
Sbjct: 365 LKWTPAEQVSRSANTMLEPEMVTLCIDGGRKA----KIR-PGDILGALTGEAGLTAADVG 419

Query: 648 QPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           + ++    + + I +  AK  L Q      ++G++ +  L
Sbjct: 420 KIDMFPVHAYVAIRKASAKRALQQL-QQGKIKGKNCKARL 458


>gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
 gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
          Length = 506

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 95/437 (21%), Positives = 161/437 (36%), Gaps = 58/437 (13%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
           + + F   T  QE  I+     M  K+    I Q   G+GKT    I +   ++      
Sbjct: 18  KRMGFEEATPIQEGTIRL---GMEGKDI---IGQAQTGTGKTTAFGIPLIEKIDTKDGNV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +I+AP   LA Q  E + +  Q+  + +  + G    + + +AL      +  II+GT
Sbjct: 72  QGLIIAPTRELAIQVSEELYRLGQDKNVRILSVYGGQEISRQIRAL----KNRPQIIVGT 127

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I    L L  V        DE    G  + +           ++ +     +T
Sbjct: 128 PGRLLDHINRRTLKLDNVNTLILDEADEMLNMGFIEDI---------QTIMASVPDTRQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I +I EK   + P    I       E IE+  V   E +K  ++   +  
Sbjct: 179 LLFSATMPDAIRRIAEKFM-KTPEIVKIKSKEMTVENIEQFYVKSVEREKFDFLSRLLNV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           ++      F     R + L +           IHG +S   + SV+  FK G   +L+AT
Sbjct: 238 QQPELAIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKIDILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNS 604
            V   G+D+   S +   +      + +H++ GR GR  +    +    P     LS   
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDPESYVHRI-GRTGRAGKKGVAVTFVTPREMGYLSIVE 356

Query: 605 YTRLSVLKNT---------EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
            T    ++                +A E L +  E   LG        F     E HD++
Sbjct: 357 RTTKKKMEALVPPTANEAVLGQKRVAMEQLLEMTEKNNLGD----YRDFATQMLEKHDAV 412

Query: 656 LEIARKDAKHILTQDPD 672
             IA   A   +T++P+
Sbjct: 413 DLIA--AALKTMTKEPE 427


>gi|332306494|ref|YP_004434345.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173823|gb|AEE23077.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 436

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 126/346 (36%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
            P+  Q  AI  IL+          +     G+GKT    + +   +  G        +A
Sbjct: 23  DPSPIQAQAIPAILEGKD------IMAAAQTGTGKTAGFTLPLLELLNRGKHARGNQARA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q    +  Y ++  +   ++ G +    +   L +       I++ T  
Sbjct: 77  LVLTPTRELAAQVGASVVDYGKDLPLRSAVVFGGVGINPQMIKLRK----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L ++++DE  R      +   +K       ++   P  R  +L S
Sbjct: 133 RLLDLYNQNAVRFDDLEVLVLDEADRMLDMGFIHDIKK-------VLKLLPAKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N   E +E+    + + +K   +   I++     
Sbjct: 186 ATFSDDIRALAKGLVNNPVEVSVSPPNTTVEAVEQSICPVDKNQKTPALIRMIKDNDWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E    + A IHG  S   +   +  FK+G  + L+AT +   
Sbjct: 246 VLVFSRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKSGKVRALVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+     ++  +  +     +H++ GR GR       I L    
Sbjct: 306 GLDISQLPQVVNYDLPNVAEDYVHRI-GRTGRAGASGQAISLVTAD 350


>gi|330925821|ref|XP_003301209.1| hypothetical protein PTT_12655 [Pyrenophora teres f. teres 0-1]
 gi|311324270|gb|EFQ90696.1| hypothetical protein PTT_12655 [Pyrenophora teres f. teres 0-1]
          Length = 690

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 86/410 (20%), Positives = 150/410 (36%), Gaps = 60/410 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
            PT  Q +AI   LQ          I     GSGKT   L+ + A +             
Sbjct: 291 EPTPIQRAAIPIALQCRD------LIGVAKTGSGKTAAFLLPLLAYISQLPPLDAINRHD 344

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+I+AP   LAQQ  E  +K+         ++ G      +   +       A III
Sbjct: 345 GPYALILAPTRELAQQIEEEARKFATPLGFRTAVLVGGHSIEEQSFQMRD----GAEIII 400

Query: 381 GTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLT-----------QKATAP 421
            T     D I+   L+L           D     G ++ +                  A 
Sbjct: 401 ATPGRLNDCIERRVLVLSQCTYVIMDEADRMIDMGFEEPVNKILAALPVSNEKPDTEEAE 460

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
               M      +T++ T+     + +I ++ + R  I T I  +    + +E+    +  
Sbjct: 461 DPDAMKRGLYRQTMMYTATMPPALERIAKQYSRRPAIVT-IGNLGEATDTVEQRVEFIQG 519

Query: 482 GKKAYWICPQIEEKKES--------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            +K      +I    E         N +   +      +H   S A +HG  +   +E+ 
Sbjct: 520 EEKRKKRLQEILTSGEFAPPIIVFVNIKRNCDAIARDIKHMGFSSATMHGSKTQEQREAA 579

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           + + K+G   +L+AT +   GID+ D S+++  N      A  H++ GR GR ++  + I
Sbjct: 580 LAALKSGQTNVLVATDLAGRGIDIPDVSLVVNFNMPSSIEAYTHRI-GRTGRQDKKGTAI 638

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ--------RKEGEILG 635
             +    +   Y    +L  T+       EDL++        +K GE++G
Sbjct: 639 TFWGNEDADVLYDLKQIL--TKSNLSKVPEDLRKHEAAQQKGKKRGEVMG 686


>gi|306833030|ref|ZP_07466162.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
 gi|304424929|gb|EFM28063.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
          Length = 526

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 70/368 (19%), Positives = 129/368 (35%), Gaps = 34/368 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     ++      QA+++A
Sbjct: 23  EPSPIQELTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIDTNRNVVQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ +   + V  + G      + KAL       AHI++GT     D
Sbjct: 77  PTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLV 436
            I+   L L  V        DE    G        +++       LL +AT     + + 
Sbjct: 133 LIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLFSATMPEAIKRIG 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +  + + +  K+  K      +    I +   D+     +++  +  +   +  +     
Sbjct: 193 VKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMDVDQPELSIVFGRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D
Sbjct: 249 ----KRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + +   +      + +H++ GR GR  +    I    P           + K    
Sbjct: 305 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKHGQSITFVAPNEMGYLSIIEKLTKKRMK 363

Query: 617 GFLIAEED 624
           G   A  D
Sbjct: 364 GLKPATAD 371


>gi|295107314|emb|CBL04857.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 445

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 124/357 (34%), Gaps = 36/357 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-----GGQAVI 326
           +PT  QE AI   L+          +     G+GKT    + +   ++        +A++
Sbjct: 57  APTPVQEQAIPLALEGRDV------VAAAVTGTGKTTAFALPVIERIDRAKKPGSPRALV 110

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           ++P   LA Q      +  + + + V  + G +P   +   L R       I++ T    
Sbjct: 111 VSPTRELALQIDAACTQLAKGSGLRVVTVVGGVPYKGQLSKLSR----GVDILVATPGRL 166

Query: 387 QDSIQYYK--------LILVIVDEQHRFGVQ--QRLKLTQKATAPHVLLMTATPIPRTLV 436
            D ++           L+L   D     G     +  +    ++   LL +AT   + + 
Sbjct: 167 HDLMERGDVKLRDVEILVLDEADRMLDMGFWPTMKKIVAATPSSRQTLLFSATLDRKVMQ 226

Query: 437 LTSLGDID--ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
             S    D    ++  K      I+  I+P+  + +      ++   G K   +      
Sbjct: 227 SVSAILRDPAFVEVAHKGETSDTIEQFIVPVGSMQKASLLRLLLAERGSKRVIVFT---- 282

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               + ++  E      +        IH   +   ++  + +F  G   +L+AT V+  G
Sbjct: 283 ----DTKTRAEICTGQLKRAGFRAESIHSDKTQAQRKRALAAFSKGDVDVLVATDVLARG 338

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           IDV D + ++           +H++ GR GR  E    I    P           +L
Sbjct: 339 IDVPDIAYVVNYELPENPDDYVHRI-GRTGRAGEAGCSISFVSPEAKAQLLDIEKLL 394


>gi|198462622|ref|XP_002135340.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
 gi|198150906|gb|EDY73967.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
          Length = 537

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 66/368 (17%), Positives = 129/368 (35%), Gaps = 41/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q  A    L           +     GSGKTL  ++     +          G  
Sbjct: 125 EPTPIQAQAWPIALSG------HNLVGIAKTGSGKTLAFILPAILHINGQQPLQRGEGPI 178

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ       +  +  +    + G  P++ +   L+R       III T 
Sbjct: 179 ALVLAPTRELAQQIQSVANDFGSSAFVRNTCVFGGAPRSKQASDLKR----GVEIIIATP 234

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D +Q       +   +++DE  R          +K            P  + L+ +
Sbjct: 235 GRLLDFLQSGATNLRRCTYLVLDEADRMLDMGFEPQIRKVLGQIR------PDRQILMWS 288

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    ++ ++ E   G      +       +  I +   V  E +K+  +   +    + 
Sbjct: 289 ATWPKEVRQLAEDFLGSYIQINIGSLELSANHNIRQYVEVCGEHEKSAKLKDLLSHIYDQ 348

Query: 499 NF-----------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +   +        F  S+  IHG  S +D++SV++ F++G   +L+A
Sbjct: 349 AHAPGKIIIFVATKKKTDELARFINAFGVSVGSIHGDKSQMDRDSVLNDFRSGRANILVA 408

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV     +I  +        +H++ GR GR     +    +    ++ +   
Sbjct: 409 TDVAARGLDVDGIKYVINFDYPQSSEDYIHRI-GRTGRKLSKGTSYAFFTRKNARCARAL 467

Query: 608 LSVLKNTE 615
           + +L+   
Sbjct: 468 IDILREAN 475


>gi|157138330|ref|XP_001657248.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108869525|gb|EAT33750.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 1029

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 143/389 (36%), Gaps = 42/389 (10%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           K           K    +LR + F  PT  Q  AI  I+           I     GSGK
Sbjct: 365 KPIKTWAHCGVSKKEFDVLRKLGFEKPTPIQCQAIPAIMSGRD------LIGIAKTGSGK 418

Query: 307 TLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           TL  ++ M   +          G  ++IM P   L  Q  + IKK+ ++  +    + G 
Sbjct: 419 TLAFILPMFRHILDQPPLEDGDGPISIIMTPTRELCMQIGKDIKKFAKSLNLRAVCVYGG 478

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQ 410
              + +   L+R     A II+ T     D +           ++  V++DE  R     
Sbjct: 479 TGISEQIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDLG 534

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
                 +            P  +T++ ++     +  +  +   +KPI+  I   + + +
Sbjct: 535 FEPQVMRIIDNIR------PDRQTVMFSATFPRQMEALARR-ILKKPIEIQIGGRSVVCK 587

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHG 523
            +E+  VVL E  K + +   +   +E      F    E  + L +    +      +HG
Sbjct: 588 DVEQHVVVLEEDAKFFKLLELLGLYQELGSIIVFVDKQENADILLKDLMKASYPCLSLHG 647

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +   D++S +  FK G  KLLIAT+V   G+DV    +++  +  +     +H+  GR 
Sbjct: 648 GIDQFDRDSTIIDFKQGRVKLLIATSVAARGLDVKQLILVVNYDCPNHYEDYVHR-CGRT 706

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           GR                + S   +  L+
Sbjct: 707 GRAGNKGFAWTFLTHEQGRYSGDIIRALE 735


>gi|86358753|ref|YP_470645.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
 gi|86282855|gb|ABC91918.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
          Length = 560

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 74/360 (20%), Positives = 135/360 (37%), Gaps = 38/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--------GQ 323
           +PT  QE AI  +L+          I     G+GKT    + +   + A          +
Sbjct: 45  TPTPIQEQAIPLLLEGRD------LIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTTR 98

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   L  Q  E +KK+ + + + + ++ G +    ++  LE+       I++ T 
Sbjct: 99  TLILAPTRELVNQIAENLKKFIRKSPLRINVVVGGVSINKQQLQLEK----GTDILVATP 154

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPR 433
               D +            L+L   D+    G    L+   K        +L +AT    
Sbjct: 155 GRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKKRQTMLFSATMPKA 214

Query: 434 TLVLTSLGDIDISKITEKPAGR--KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L     +D  K+   P G+    ++  +  +   ++  E L+  L+E      I   
Sbjct: 215 IADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVGGKNDKTELLRKSLTENPDGRAIVFL 274

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   E+     ++   S+A IHG  S   +E  + +F++G+ K LIAT V 
Sbjct: 275 -------RTKHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSIKTLIATDVA 327

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+   S +   +      A +H++ GR  R       I    P  +K       ++
Sbjct: 328 ARGIDIPAVSHVYNYDLPEVPDAYVHRI-GRTARAGRDGIAIAFCAPDEAKLLRDIERLM 386


>gi|89072912|ref|ZP_01159469.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89051434|gb|EAR56889.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 432

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 132/363 (36%), Gaps = 28/363 (7%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  I +   T  Q+ AI    +          +     G+GKT    + +   +      
Sbjct: 16  LTEIGYEKLTPVQQKAIPQARRG------ADILALAQTGTGKTAAFSLPIIQKLIEKPKS 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+I+AP   LA+Q    I +Y + T +    I G    + + K LE+      
Sbjct: 70  KSRFNVRALILAPTRELAEQIANNINEYAKYTDVNCTAIFGGKKMSSQEKRLEQ----GV 125

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I++ T     + ++   + L  + E   F    R+       A  V+L      P+T++
Sbjct: 126 DILVATPGRLIEHMELNNVSLANL-EFLVFDEADRMLDMGFIGAIRVILEDIRTKPQTML 184

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     ++ +       KP +  + P N   + I  +   + E +K   +   I +K 
Sbjct: 185 FSATSSPQMNSLASD-ILHKPQRITVTPENSTADTIAHVVYPVDEDRKREMLSELIGKKN 243

Query: 497 ESN---FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                 F +  E  N L +          + HG  +   +   ++ FK G  ++++AT V
Sbjct: 244 WKQVLVFVNYKESANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATEV 303

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ +   ++  +        +H++ GR GR  +  + I                +
Sbjct: 304 AARGLDIQNLPYVVNYDMPFLAEDYVHRI-GRTGRAGQKGNAISFVSREEELTLVQIERL 362

Query: 611 LKN 613
           +  
Sbjct: 363 IGQ 365


>gi|326802990|ref|YP_004320808.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651469|gb|AEA01652.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 508

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 62/347 (17%), Positives = 129/347 (37%), Gaps = 35/347 (10%)

Query: 267 RNIPFSPT-KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
           +N+ F  T   Q   I   L+          + Q   G+GKT    + +   ++      
Sbjct: 17  KNMGFEETTPIQAQTIPYALEGRDV------LGQAQTGTGKTAAFGLPLLEKIDHHTEHI 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+++AP   LA Q+ + + +  +   +    + G      +   +++     A +++GT
Sbjct: 71  QALVIAPTRELAIQNGQELYRLGKEKGVRTVNVYGGANIRRQIHQIKK----GAPVVVGT 126

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP 432
                D ++   L L  +        DE    G  + +   +    +    LL +AT   
Sbjct: 127 PGRLIDLMKRKVLNLNFIETLVLDEADEMLNMGFIEDIETIIRATPSNRQTLLFSATMPK 186

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + +    + D    KI  K      I       +  ++     + +     K   +  
Sbjct: 187 EIQRIGEHFMQDPVTVKIEAKEMTADTIDQYFTKCHDREKFDLLTRFIDVSHAKLAIVFA 246

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           + + + +   R ++ER              IHG +S   + S+M  FK+G  ++L+AT V
Sbjct: 247 RTKRRVDEVSRGLIER--------GYQAEGIHGDLSQEKRSSIMKDFKDGRLEILVATDV 298

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
              G+D+ + + +   +      + +H++ GR GR  +    I    
Sbjct: 299 AARGLDISNVTHVYNYDIPQDPESYVHRI-GRTGRAGKGGMSITFVS 344


>gi|310829374|ref|YP_003961731.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612]
 gi|308741108|gb|ADO38768.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612]
          Length = 547

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 139/370 (37%), Gaps = 45/370 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T+ QE AI  +++          I +   G+GKT+   I     ++      Q +++ P 
Sbjct: 25  TEIQERAIPRLMEG------GDLIGKSQTGTGKTMAFAIPAIEKIDPELRKPQVLVLLPT 78

Query: 331 GILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  E  +K  + +  I V  + G     ++ + L+      A I++GT     D 
Sbjct: 79  RELALQVSEEFRKVLKYSHSIKVVAVFGGASIENQIRDLKS----GAQIVVGTPGRVMDH 134

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           ++   L        +L   DE    G ++ ++L   A    V         +T++ ++  
Sbjct: 135 MRRKTLKFNALTMAVLDEADEMLNMGFREDIELILDAVDHDV---------QTVLFSATM 185

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---- 497
              I KI E    + P    I P   +   IE+    +S+  K   +   ++  K     
Sbjct: 186 PKPILKIAETY-QKNPTMIEISPKTMVAPSIEQKYFNISDQNKFEALTRLLDVYKPQRSL 244

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +  V+      +    S+  IHG M  + + +V+  F  G  K+L+AT V   GI
Sbjct: 245 IFCNTKHYVDEITENLQELGYSVDKIHGDMRQVSRLNVLKRFSQGRLKILVATDVAARGI 304

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV D  I+   +        +H++ GR GR  +    + L                K + 
Sbjct: 305 DVDDVDIVFNYDVPDNEEYYVHRI-GRTGRAGKSGLSLTLARSRDQFKLRKITDYTKKS- 362

Query: 616 DGFLIAEEDL 625
                 E DL
Sbjct: 363 -----IERDL 367


>gi|198476381|ref|XP_001357350.2| GA17489 [Drosophila pseudoobscura pseudoobscura]
 gi|198137669|gb|EAL34419.2| GA17489 [Drosophila pseudoobscura pseudoobscura]
          Length = 578

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 66/368 (17%), Positives = 130/368 (35%), Gaps = 49/368 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--------GQAV 325
           T  Q+ AI  I            +     GSGKT   L+ +   +            QAV
Sbjct: 186 TPIQKVAIPVIAAGRD------LMACAQTGSGKTAAFLVPILNLLLTDAVDLEIGKPQAV 239

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I++P   LA Q Y   +K++  + + + I+ G     ++ +++        H++I T   
Sbjct: 240 IVSPTRELAIQIYHEARKFSHESYLKISILYGGTSVKYQNESIMM----GCHLLIATPGR 295

Query: 386 FQDSIQY--------YKLILVIVDEQHRFGV----QQRLKLTQKATAPHVLLMTATPIP- 432
             D ++           L++   D     G     ++ +           L+ +AT    
Sbjct: 296 LLDFVERAFITFDDTRFLVMDEADRMLDMGFSESMRKIVTHCTMRAQHQTLMFSATFPQE 355

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWI 488
            + +    L +     I         +K  I  +   N+  ++I+ LK   ++G   +  
Sbjct: 356 IQRMAGEFLNNYIFVTIGVVGGACSDVKQTIYEVTKYNKRRKLIDILK-ESADGTIVFV- 413

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   S           IHG      +E  +  FK G  K+LIAT
Sbjct: 414 ----------ETKRGADFLASYLSEAEHPTTSIHGDRLQSQREQALRDFKTGKMKVLIAT 463

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTR 607
           +V   G+D+ +   ++  +        +H++ GR GR          + P   S  +   
Sbjct: 464 SVASRGLDIKNVKHVVNYDMPKTIDDYVHRI-GRTGRVGNNGRATSFFDPDQDSALASDL 522

Query: 608 LSVLKNTE 615
           + +L+ ++
Sbjct: 523 VKILEGSD 530


>gi|134301686|ref|YP_001121654.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049463|gb|ABO46534.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 569

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 151/382 (39%), Gaps = 45/382 (11%)

Query: 269 IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM-----AAAVEAGG 322
           + +  PT  Q+ AI  IL           + Q   G+GKT    + +      A+ +   
Sbjct: 25  LGYENPTPIQQYAIPYILSGRDV------LGQAQTGTGKTAAFALPLINNMDLASRDRAP 78

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E  + + +N   + V  I G      + +AL++       +++G
Sbjct: 79  QVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQ----GVKVVVG 134

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I+           L+L   DE  R G    +K      +            +
Sbjct: 135 TTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQS---------Q 185

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ I E+   R P K  +    +    + +  +V+   +K   +   +E
Sbjct: 186 RLLFSATIPTDIADIIEEYL-RNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLE 244

Query: 494 EKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            ++            S +E  ++L       +A I+G M    +E ++D F++    +L+
Sbjct: 245 TEETDGVIIFVKTKTSTIEVADNLK-ALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V+  GID+   S +I  +  +     +H++ GR GR     + I L      +   T
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRI-GRTGRAGREGTSISLVPLKEMRFLRT 362

Query: 607 RLSVLKN-TEDGFLIAEEDLKQ 627
                 +  ++ F+ + +DL Q
Sbjct: 363 LERFTGSPMQEVFMPSAKDLAQ 384


>gi|147921542|ref|YP_684642.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
 gi|110620038|emb|CAJ35316.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
          Length = 497

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 129/363 (35%), Gaps = 35/363 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
             + F   T  QE AI   ++          I Q   G+GKT    I M  A+     G 
Sbjct: 18  HEMGFEEATPIQEQAIPLAMEGKD------LIGQARTGTGKTAAFGIPMVEAIRPTSKGV 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++ P   LA Q  E + +  +   I    I G      + KALE +     HI++GT
Sbjct: 72  QGLVVVPTRELAVQVAEELTRIGKVRGIRSVAIYGGQDFRSQVKALEEL----PHIVVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT--P 430
                + ++   +        +L   D+    G        L +       LL +AT  P
Sbjct: 128 PGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQTLLFSATLSP 187

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + L    L D ++ +  E+           I +    +     +++  E  +   +  
Sbjct: 188 PVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPEKQKFEALTRLLDQEKPELAIVFV 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  +    V E   +L E    ++ + HG +    +E+ +D FK G   +L+AT V
Sbjct: 248 -------ATRIRVGELAKALVERGYHALGL-HGDLLQYQRENTLDKFKAGEVSILVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR     +      P            
Sbjct: 300 AARGLDIQGVTHVYNFDIPRDPDSYVHRI-GRTGRAGNAGTATTFVTPKDKTALEAIEQA 358

Query: 611 LKN 613
           + +
Sbjct: 359 IDH 361


>gi|329960847|ref|ZP_08299126.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057]
 gi|328532133|gb|EGF58937.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057]
          Length = 423

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 126/359 (35%), Gaps = 34/359 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQAVI 326
           +PT  QE +I  +LQ          +     G+GKT    I +   +       G +A+I
Sbjct: 23  TPTPIQEKSIPILLQGKD------LLGCAQTGTGKTAAFSIPILQKLYKTDNRKGIKALI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  + Y + T +   +I G + Q  +   L+R       I++ T    
Sbjct: 77  LTPTRELAIQIGESFEAYGRYTGLRHTVIFGGVGQKPQTDELKR----GVQILVATPGRL 132

Query: 387 QDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           QD +         L   ++DE  R      +           +L       +TL  ++  
Sbjct: 133 QDLVNQGFINLKALDFFVLDEADRMLDMGFIHDI------RRILKFLPAKRQTLFFSATM 186

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
             +I  +        P K  + P +   + I +    + + +K   +   +++       
Sbjct: 187 PPEIETLANS-MLTDPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIHLLKDPSIASVL 245

Query: 497 -ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  +   ++              IHG  S   ++  +  FK+ T ++LIAT +   GI
Sbjct: 246 IFTRTKHGADKLARTLSKSGIPAEAIHGNKSQNARQRALTGFKSHTLRVLIATDIAARGI 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           DV   S +I     +     +H++ GR GR       +                ++  T
Sbjct: 306 DVDQLSHVINYELPNIPETYVHRI-GRTGRAGHDGIALSFCESEELPYLKDIQKLIGKT 363


>gi|149039843|gb|EDL93959.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Rattus norvegicus]
          Length = 940

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 427

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 428 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 487

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 488 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 544 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 596

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 597 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 715

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 716 KGYAYTFITEDQARYAGDIIKALE 739


>gi|134034065|sp|A2QC74|DBP2_ASPNC RecName: Full=ATP-dependent RNA helicase dbp2
 gi|134056301|emb|CAK37534.1| unnamed protein product [Aspergillus niger]
          Length = 565

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 134/365 (36%), Gaps = 43/365 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q       L           +   + GSGKTL   +     + A        G   
Sbjct: 160 PTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIV 213

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T  
Sbjct: 214 LILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSR----GVEVCIATPG 269

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP-- 432
              D ++  +        L+L   D     G   Q R  ++Q        + +AT     
Sbjct: 270 RLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEV 329

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLKVVLSEGKKAYWI 488
           R L    L D     I           T    V+    + D++I+ L+ ++        I
Sbjct: 330 RQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMENRANKCLI 389

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       R   E    L +    +++I HG     +++ V++ FK G   +++AT
Sbjct: 390 FT-------GTKRIADEITRFLRQDGWPALSI-HGDKQQQERDWVLNEFKTGKSPIMVAT 441

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV D + ++  +  +     +H++ GR GR     + I  +    SK +   +
Sbjct: 442 DVASRGIDVRDITHVLNYDYPNNSEDYVHRI-GRTGRAGAKGTAITFFTTDNSKQARDLV 500

Query: 609 SVLKN 613
           ++L  
Sbjct: 501 TILTE 505


>gi|83858471|ref|ZP_00951993.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853294|gb|EAP91146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 480

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 136/373 (36%), Gaps = 40/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  QE AI   L           +     G+GKT    + M   +  G       +++
Sbjct: 23  KPTPIQEGAIPVALTGRDV------LGIAQTGTGKTASFTLPMIERLSRGRARARMPRSL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  + +K Y +N ++ + ++ G +    ++K L++     A I+I T   
Sbjct: 77  VLAPTRELAAQVADNVKLYAKNHKLNMALLIGGVSFEPQKKILDQ----GADILIATPGR 132

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTL 435
             D  +   L+L  V     DE  R      +   ++           L  +AT      
Sbjct: 133 LLDHFERGGLLLTGVEILVIDEADRMLDMGFIPDIERILKLLPPRRQTLFFSATMPGEIK 192

Query: 436 VLTSLGDIDISKIT-EKPAGRKPIKTVI---IPINRIDEVIERLKVVLSE-GKKAYWICP 490
            L      D  ++   +PA      T     +  N+     E L+  ++  G K   I  
Sbjct: 193 HLVDTFLRDPERVEVTRPAQTADTITQFILRVSDNQARTKREALRAAINRDGVKNGIIF- 251

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   N +  V+      +    S A IHG +    +   +  FK+G  +LL+A+ V
Sbjct: 252 -------CNRKRDVDIVARSLQRHGFSAAPIHGDLDQSQRTKTLAEFKSGELRLLVASDV 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   S +   +        +H++ GR GR  +    + L     +K     + +
Sbjct: 305 AARGLDIPAVSHVFNVDIPRNADDYVHRI-GRTGRAGQKGEAVTLVSSEDNKALAKVVKL 363

Query: 611 LKNTEDGFLIAEE 623
           +        ++ E
Sbjct: 364 IGKEPAELKLSGE 376


>gi|320527000|ref|ZP_08028189.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei
           F0204]
 gi|320132585|gb|EFW25126.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei
           F0204]
          Length = 459

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/353 (18%), Positives = 128/353 (36%), Gaps = 24/353 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIM 327
           +P+  QE AI  +L+          +     G+GKT    + +   +E       +A+++
Sbjct: 23  TPSPIQEKAIPVMLEGKD------IVACAQTGTGKTAAFALPILNKLEYKKKHQIRALVL 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LA Q +E  KK+ +  ++    + G  P   +RKAL         I+I T     
Sbjct: 77  TPTRELAVQIFENFKKFGRYLKLRACCVYGGAPSGPQRKALRS----GCDILIATPGRLN 132

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D +   ++IL  + E        R+           +        +T++ ++    +I +
Sbjct: 133 DFMVQGEIILSDI-EVFVLDEADRMLDMGFIGDVRTIASRIPEARQTVMFSATMPKEIKE 191

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN------FR 501
           +        P+   + P     E I +  V   +  K   +   +   + +        +
Sbjct: 192 LAN-ELLHDPVDIRVAPPASPAETITQYLVYCEKADKKRLLKDMLVSPEVTKAIVFTRTK 250

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              +R           +  IHG  +   +++ +  F+     +L+AT V   GID+   S
Sbjct: 251 IGADRLTKKLIEDGIKVLTIHGDKTQGQRQNALQRFRTNQVDVLVATDVAARGIDISGIS 310

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEI-SSCILLYHPPLSKNSYTRLSVLKN 613
            +   +      + +H++ GR GR  +   S  L  H  L   +     + K 
Sbjct: 311 HVFNYDLPEEDESYIHRI-GRAGRAGKEGISISLCCHEELGLLASIEKMLKKE 362


>gi|238798166|ref|ZP_04641653.1| ATP-independent RNA helicase dbpA [Yersinia mollaretii ATCC 43969]
 gi|238718020|gb|EEQ09849.1| ATP-independent RNA helicase dbpA [Yersinia mollaretii ATCC 43969]
          Length = 460

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 85/456 (18%), Positives = 178/456 (39%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + ++  T  Q +A+  IL     +       +   GSGKT    I +   +  G   
Sbjct: 19  LNELGYTEMTPVQAAALPAILNGQDVR------AKAKTGSGKTAAFGIGLLDKIAVGEFV 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  + TQ I +  + G  P  H+  +L        HI++
Sbjct: 73  TQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLIHA----PHIVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L+L  + +        R+       A + ++    P  +TL+ ++ 
Sbjct: 129 GTPGRIQEHLRKKTLVLDDL-KILVLDEADRMLDMGFTDAINDVIAYTPPQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
             + I +I+ +   R+P+   +   +     IE++    +  K+   +   +   +    
Sbjct: 188 YPVGIEQISAR-VQREPVNVEVEDGDEAP-AIEQVFFETTREKRLPLLISVLSHYQPASA 245

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +      E    S+  +HG +   D++ V+  F N +C++L+AT V   G
Sbjct: 246 VVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL--- 611
           +D+ D  +++           +H++ GR GR       + L  P     ++     L   
Sbjct: 306 LDIKDLELVVNFELAFDPEVHVHRI-GRTGRAGMSGLAVSLCTPQEMTRAHAIEDYLQIK 364

Query: 612 ----------KNTEDGFLIAEEDL--------KQRKEGEILG--IKQSGMPKFLIAQPEL 651
                     ++           L        K R  G+ILG    ++G+    + + ++
Sbjct: 365 VKWTPAEQVSRSANTLLEPEMVTLCIDGGRKAKIR-PGDILGALTGEAGLTAADVGKIDM 423

Query: 652 H--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
               + + I +  AK  L Q      ++G++ +  L
Sbjct: 424 FPVHAYVAIRKASAKRALQQL-QQGKIKGKNCKARL 458


>gi|254443370|ref|ZP_05056846.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257678|gb|EDY81986.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 469

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 126/372 (33%), Gaps = 41/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            P+  Q  AI  IL+          +     G+GKT    + +   +          +A+
Sbjct: 23  EPSPIQAKAIPAILEGRDV------LGGAQTGTGKTAAFSLPLLQRLSESEFKNKRPRAL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+AP   LA Q ++ I  Y +   +      G +    +   L R       II+ T   
Sbjct: 77  ILAPTRELAAQVHQSILDYGKGVDLHSACFFGGVNINPQISKLRR----GLDIIVATPGR 132

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D  Q  +        L+L   D     G    ++   K               + L  
Sbjct: 133 LLDLCQRREANLGAIETLVLDEADRMLDMGFIHDIRKILKLLPHD---------RQNLFF 183

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    D+ K+ +    R P++  + P N   + I +    + +  K   +   I++   
Sbjct: 184 SATYAKDVKKLADS-ILRNPVEVEVAPRNSTADQIAQEAYSIGQKNKREALSNLIKDGDW 242

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +    R     +    + A IHG  S   +E  +  FK    ++L+AT + 
Sbjct: 243 KQVLVFTRTKHGANRLAKQLDSDGITAAAIHGNKSQSARERALQDFKTNYIRVLVATDIA 302

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID++D   ++     +     +H++ GR GR  +    I L              VL
Sbjct: 303 ARGIDIIDLPHVVNFELPNIPEDYVHRI-GRTGRAGKKGKAISLVCSEEEAYLVDIEKVL 361

Query: 612 KNTEDGFLIAEE 623
           K     F ++  
Sbjct: 362 KREVPLFELSPR 373


>gi|149908418|ref|ZP_01897081.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
 gi|149808581|gb|EDM68516.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
          Length = 449

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 78/376 (20%), Positives = 151/376 (40%), Gaps = 43/376 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G +        
Sbjct: 23  TPSAIQAQAIPAVLSGRDV------MAAAQTGTGKTAGFTLPILEILSQGPRPRANQART 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I+ Y+++ ++   ++ G +    +   L R       I++ T  
Sbjct: 77  LILTPTRELAAQIAENIEVYSKHLRLTSTVVFGGVKINPQMTRLRR----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     +I++++L ++++DE  R      L+  +K       ++   P  R  +L S
Sbjct: 133 RLLDLYNQNAIRFHQLEILVLDEADRMLDMGFLRDIRK-------ILAVLPQKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   +     P++  + P N   + +E+    + + KKA  +   I+E     
Sbjct: 186 ATFSDDIRQLARGLINDPVEISVTPRNAAAKSVEQWMHPVDKKKKALLLTHLIKENDWKQ 245

Query: 500 FRSVVER---FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                +     N L +H      + A IHG  S   +   + +FK+G  + LIAT +   
Sbjct: 246 VLVFTKTKHGANKLTKHLEEQGINAAAIHGNKSQSARTKALANFKSGEVRALIATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPL----SKNSYTRL 608
           GID+V    ++  +  +     +H++ GR GR     + I L+ H  +    +    T+ 
Sbjct: 306 GIDIVQLPQVVNFDLPNVPEDYVHRI-GRTGRAGSEGTAISLVCHDEMKELVAIEQLTQK 364

Query: 609 SVLKNTEDGFLIAEED 624
            + +   DGF  A  D
Sbjct: 365 HLERVVIDGF--APMD 378


>gi|297295088|ref|XP_002804561.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like isoform 2
           [Macaca mulatta]
 gi|297295090|ref|XP_001109331.2| PREDICTED: probable ATP-dependent RNA helicase DDX46-like isoform 1
           [Macaca mulatta]
          Length = 1032

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 427

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 428 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 487

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 488 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 544 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 596

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 597 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 715

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 716 KGYAYTFITEDQARYAGDIIKALE 739


>gi|260770147|ref|ZP_05879080.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
 gi|260615485|gb|EEX40671.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
          Length = 422

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 140/382 (36%), Gaps = 33/382 (8%)

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             +P+ +   + +++      +PT+ Q  AI  +L+          +     G+GKT   
Sbjct: 7   PFLPLGIAPALVERLSALGIHTPTEIQAQAIPHVLEGKDV------LAGAQTGTGKTAAF 60

Query: 311 LIAMAAAVEAGG----------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            + +                  +A+++ P   LAQQ ++ ++ Y Q +++ +    G   
Sbjct: 61  GLPLIQRFVDHPLQREPNSKDIRALVLVPTRELAQQVFDNLQSYAQGSELKIVTAYGGTS 120

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +++ L     G A I+I T     D      L L   +        + L +      
Sbjct: 121 MNVQKQNLR----GGADILIATPGRLLDHAHVKTLYLGNAEALVLDEADRMLDMGFMPDI 176

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             VL        +TL  ++  D  I     +   + P++  + P N   + +E++   + 
Sbjct: 177 QRVLRKMQH-ERQTLFFSATFDSKIKAFAHR-MMQNPVEVQVAPSNSTADTVEQMVYPVD 234

Query: 481 EGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           + +K   +   I  +           +   +      +      A I+G  S   ++  +
Sbjct: 235 KKRKRELLAYLIGSRNWQQVLVFTRTKQGSDALAQELKLDGIKAASINGDKSQGARQKAL 294

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           D FK+G  + LIAT V   GID+     ++  +        +H++ GR GR  +    + 
Sbjct: 295 DDFKSGKVRALIATDVAARGIDIAQLEQVVNFDMPFKAEDYVHRI-GRTGRAGKAGFAVS 353

Query: 595 LYHPPLSKNSYTRLSVLKNTED 616
           L    +S +    L  ++   D
Sbjct: 354 L----MSHDEQPLLEAIERLLD 371


>gi|300779365|ref|ZP_07089223.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
 gi|300504875|gb|EFK36015.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
          Length = 434

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 131/343 (38%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAV 325
           +PT  QE +I DIL           +     G+GKT    I +   +          +A+
Sbjct: 23  TPTPIQERSIPDILDGRD------FLGCAQTGTGKTAAFSIPILQNLSKNKIPNKHIKAL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E I  Y +   +   +I G + Q ++  AL++       I++ T   
Sbjct: 77  ILTPTRELAIQIEENINAYGKYLPLKQLVIFGGVKQGNQEAALKK----GVDILVATPGR 132

Query: 386 FQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D I         L + ++DE  R      +   +       ++       +TL  ++ 
Sbjct: 133 LLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVK------RVIKLLPQRRQTLFFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
              +I K+        P+K  + P++   + I++    + +  K   +   ++       
Sbjct: 187 MPGEIQKLANSILN-NPVKVEVTPVSSTADTIKQSVYFVEKDNKLNLLSHILKNDISDSV 245

Query: 499 ----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +   ++ +   +    S   IHG  S   +++ +++FK+G  ++L+AT +   G
Sbjct: 246 LVFARTKHGADKISRKLQKDNISAEAIHGNKSQNARQNALNNFKSGKTRVLVATDIAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ID+ +   +I           +H++ GR GR     + I    
Sbjct: 306 IDIDELKFVINFELSDVSETYVHRI-GRTGRAGAEGTSISFVD 347


>gi|268591855|ref|ZP_06126076.1| ATP-independent RNA helicase DbpA [Providencia rettgeri DSM 1131]
 gi|291312828|gb|EFE53281.1| ATP-independent RNA helicase DbpA [Providencia rettgeri DSM 1131]
          Length = 457

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 82/455 (18%), Positives = 177/455 (38%), Gaps = 69/455 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           T+ Q +A+  IL     +       Q   GSGKT    + +   ++A     Q++++ P 
Sbjct: 27  TQIQAAALPPILAGKDVR------AQAKTGSGKTAAFGLGLLQHIDAKLFKTQSLVLCPT 80

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    +++  +    I +  + G +P + +R +L       AHII+ T     D 
Sbjct: 81  RELADQVANELRRLARAIPNIKILTLCGGVPFSVQRDSLAHA----AHIIVATPGRLLDH 136

Query: 390 -----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
                +Q   L  +++DE  R      +   +       ++  A    +TL+ ++    +
Sbjct: 137 LNRETVQLDALQTLVLDEADRMLDMGFMPDIE------TIIDYAPINRQTLLFSATWPEE 190

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-------E 497
           I++I+++     P    I  ++ +   +E+    ++  +K   +   +  ++        
Sbjct: 191 IARISQQ-IQNNPQTIEINSVDELP-AVEQQFYEVARHEKIELLQKLLSREQPASCVVFC 248

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +     +++L      S+ ++HG M   +++  +  F NG+ ++L+AT V   G+D+
Sbjct: 249 NTKKDCQAVYDALTAS-KQSVLVLHGDMEQRERDQTLVRFANGSSRVLVATDVASRGLDI 307

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS-------- 609
               ++I           +H++ GR  R  E    I L  P  ++ +             
Sbjct: 308 KALEMVINYELSWDPEVHVHRI-GRTARAGESGLAISLCAPEEAQRANALEEMLNMKLNW 366

Query: 610 ---------------VLKNTEDGFLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELH 652
                          ++    DG   A    K R  G+ILG    + G+    I +  +H
Sbjct: 367 QTEPTGLRVTPLEATMMTLCLDGGKKA----KIR-PGDILGALTGEVGLNGADIGKIVIH 421

Query: 653 --DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
              + + + R+ A            ++G+S++  L
Sbjct: 422 PTHAYVALKREVAVQAWKHL-QQGKIKGKSVKARL 455


>gi|158257008|dbj|BAF84477.1| unnamed protein product [Homo sapiens]
          Length = 1032

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 427

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 428 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 487

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 488 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 544 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 596

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 597 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 715

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 716 KGYAYTFITEDQARYAGDIIKALE 739


>gi|118602178|ref|YP_903393.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567117|gb|ABL01922.1| DEAD/DEAH box helicase domain protein [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 434

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 132/363 (36%), Gaps = 36/363 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
            P+  Q  AI  IL+          +     G+GKT   ++ +   +           + 
Sbjct: 23  EPSLIQAQAIPAILEGKDV------MAAAQTGTGKTAGFILPILEILSKCSPIKFNQVRM 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y +       ++ G +    + + L         I++ T  
Sbjct: 77  LILTPTRELAAQVSDSVTIYGKYLSFKSSVVFGGVKINPQMRKLRD----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L +++ DE  R      +   +       +L       +TL+ ++
Sbjct: 133 RLLDLYSKNAVKFDTLEIIVFDEADRMLDMGFIHDIK------RILKILPQKKQTLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               DI +I  K     P++  + P N   + +++    + + KK   +   I+E     
Sbjct: 187 TFSNDI-RILAKSLVNNPVEISVTPRNSTVKTVKQWIHPVDKFKKQALLIYLIQEHSWYQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +  E    S  +IHG  S   +   +  FKN    +L+AT +   
Sbjct: 246 VLVFSRTKHGANRIATQLEKKKISATVIHGNKSQGARTRALADFKNAKVNVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++  +        +H++ GR GR       I L     +K  +    +++N
Sbjct: 306 GIDIDQLPHVVNFDLPRVPEDYVHRI-GRTGRAGSKGEAISLVSVDEAKQLFDIERLIQN 364

Query: 614 TED 616
             D
Sbjct: 365 KLD 367


>gi|332234495|ref|XP_003266442.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Nomascus
           leucogenys]
          Length = 1031

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 427

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 428 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 487

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 488 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 544 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 596

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 597 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 715

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 716 KGYAYTFITEDQARYAGDIIKALE 739


>gi|327268476|ref|XP_003219023.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Anolis
           carolinensis]
          Length = 713

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 134/374 (35%), Gaps = 47/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I      K++   +     GSGKT   L+ + + +   G          
Sbjct: 251 PTPVQKYAIPII------KDKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGDALRAMKE 304

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K+   +++   ++ G      + + LER 
Sbjct: 305 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPCVVYGGADIGQQIRDLER- 363

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLM 426
                H+++ T     D ++  K+ L       +DE  R          ++        M
Sbjct: 364 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEKDT--M 418

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
               + +T++ ++    +I  +  +    + I   +  +    E I +  V + +  K  
Sbjct: 419 PPKGVRQTMMFSATFPKEIQMLA-RDFLEEYIFLAVGRVGSTSENITQKVVWVEDSDKRS 477

Query: 487 WICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           ++   ++              +   +           +   IHG  S  D+E  +  F++
Sbjct: 478 FLLDLLDATGKDSLTLVFVETKKGADSLEDFLFREGYACTSIHGDRSQRDREEALHQFRS 537

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++  
Sbjct: 538 GRSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATSFFNER 596

Query: 600 LSKNSYTRLSVLKN 613
               +   L +L  
Sbjct: 597 NINITKDLLDLLVE 610


>gi|324326484|gb|ADY21744.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 436

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 26  TPIQEQAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPT 79

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 80  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 135

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 136 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 194

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +         IE+  +  ++  K     ++  + +      F     R
Sbjct: 195 KRYMD-EPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 253

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 254 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 313

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 314 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 360


>gi|301612896|ref|XP_002935944.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 isoform 1
           [Xenopus (Silurana) tropicalis]
          Length = 1049

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 146/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 373 WVQCGISMKILNSLKKHAYEKPTPIQAQAIPAIMSGRD------LIGIAKTGSGKTIAFL 426

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 427 LPMFRHIMDQRPLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 486

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 487 QIAELKR----GAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQV 542

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            +            P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 543 MRIIDNIR------PDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQH 595

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 596 VIVIEEEKKFLKLLELLGHYQEKGAVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQY 655

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNG CKLL+AT+V   G+DV    ++I     +     +H+  GR GR   
Sbjct: 656 DRDSIINDFKNGVCKLLVATSVAARGLDVKQLILVINYACPNHYEDYVHR-AGRTGRAGN 714

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 715 KGYAFTFITEDQARYAGDIIKALE 738


>gi|255038837|ref|YP_003089458.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254951593|gb|ACT96293.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 383

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 133/363 (36%), Gaps = 38/363 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  IL+          +     G+GKT    I M   +             
Sbjct: 23  TPTPIQSKAIPVILETKD------LLGCAQTGTGKTAAFAIPMLQLLHENPVGKFERSRI 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E    Y + T++   +I G + Q  +  AL +       ++I T
Sbjct: 77  RALILTPTRELAIQIGESFAAYGRYTRVRHTVIFGGVGQKPQTDALAK----GVDVLIAT 132

Query: 383 HALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D I     +  +L   ++DE  R      +   +K      ++       ++L  
Sbjct: 133 PGRLLDLINQGFIKLNQLEFFVLDEADRMLDMGFVHDVKK------VIKLLPGKRQSLFF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I  +      R P+K  + P++   + I +    + +  K   +   ++++  
Sbjct: 187 SATMPPAIVTLAGT-ILRNPVKVEVTPVSSTADTIRQSVFFVDKSNKNSLLLHILQDESI 245

Query: 497 -----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                 +  +   ++   +      +   IHG  S   +++ + +FKN T ++L+AT + 
Sbjct: 246 ATALVFTRTKHGADKVVKVLRKAGVTSEAIHGNKSQTARQNALKNFKNQTTRVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV D + +I     +     +H++ GR GR       +                ++
Sbjct: 306 ARGIDVDDLTHVINYEIPNIPETYVHRI-GRTGRAGAKGIALSFCDKEEKPYLKDIHKLI 364

Query: 612 KNT 614
              
Sbjct: 365 AKN 367


>gi|167908511|ref|ZP_02495716.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei NCTC
           13177]
          Length = 435

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 165/452 (36%), Gaps = 61/452 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  Q +++   L           I Q   GSGKT    +A+ A ++A     QA+++ P 
Sbjct: 2   TPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARRFDVQALVLCPT 55

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + I++  +    + V  + G  P   + ++LE      AHII+GT     D 
Sbjct: 56  RELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIIVGTPGRIMDH 111

Query: 390 IQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +    L L      ++DE  R           K            P  +TL+ ++     
Sbjct: 112 LDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQ------CPPTRQTLLFSATYPDG 165

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------S 498
           I+K++++       K V +     D  I +    ++E ++ + +   +   +        
Sbjct: 166 IAKLSQQFLRHP--KRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFC 223

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           N +        +          +HG +   +++ V+  F N +C +L+AT V   G+D+ 
Sbjct: 224 NTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIA 283

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
               +I  +        +H++ GR GR ++    + L               L    +  
Sbjct: 284 QLEAVINVDVTPDPEVYVHRI-GRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWH 342

Query: 619 LIA-------------EEDLKQRK-------EGEILGIKQSGMPKFLIAQP-----ELHD 653
            +A              E L+           G++LG   +G   F  AQ          
Sbjct: 343 PLAELKAGGDAPLLPSMETLQILGGRKDKIRPGDVLGAL-TGDAGFSGAQIGKINVTEFS 401

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 402 TYVAVERGIARDALRKL-NAGKIKGKRVKVRL 432


>gi|317026711|ref|XP_001399394.2| ATP-dependent RNA helicase dbp2 [Aspergillus niger CBS 513.88]
          Length = 564

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 134/365 (36%), Gaps = 43/365 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q       L           +   + GSGKTL   +     + A        G   
Sbjct: 160 PTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIV 213

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T  
Sbjct: 214 LILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSR----GVEVCIATPG 269

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP-- 432
              D ++  +        L+L   D     G   Q R  ++Q        + +AT     
Sbjct: 270 RLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEV 329

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLKVVLSEGKKAYWI 488
           R L    L D     I           T    V+    + D++I+ L+ ++        I
Sbjct: 330 RQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMENRANKCLI 389

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       R   E    L +    +++I HG     +++ V++ FK G   +++AT
Sbjct: 390 FT-------GTKRIADEITRFLRQDGWPALSI-HGDKQQQERDWVLNEFKTGKSPIMVAT 441

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV D + ++  +  +     +H++ GR GR     + I  +    SK +   +
Sbjct: 442 DVASRGIDVRDITHVLNYDYPNNSEDYVHRI-GRTGRAGAKGTAITFFTTDNSKQARDLV 500

Query: 609 SVLKN 613
           ++L  
Sbjct: 501 TILTE 505


>gi|313898319|ref|ZP_07831856.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2]
 gi|312956701|gb|EFR38332.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2]
          Length = 585

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/343 (21%), Positives = 140/343 (40%), Gaps = 39/343 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMAPI 330
           T  Q  +I  I++          + + + G+GKT    I     V  G +   A+I+ P 
Sbjct: 26  TDIQAQSIPLIMEGKDV------LGRSNTGTGKTAAFGIPAIEKVCQGTRYPNALIICPT 79

Query: 331 GILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             L  Q    ++K+++    + +  I G  P   + + L+R       I++GT     D 
Sbjct: 80  RELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQIQLLKR----GCGIVVGTPGRIMDH 135

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           +    L        IL   DE    G ++ ++         + +M      +T++ ++  
Sbjct: 136 LNRRTLKLDNTNMVILDEADEMLNMGFKEDIEEI-------LSMMPEGNEHQTILFSATW 188

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
             +I +IT K     P++  I    R  + +E++      GKKA  +   +         
Sbjct: 189 PAEILRIT-KEFQNDPVRVEIKSAQRTIDTVEQIYYDAPRGKKANALRVLLSHYDPDLCM 247

Query: 497 --ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
              +  + V E  + L++H   +I++ HG M    +  VM+ F++G   +LIAT V   G
Sbjct: 248 IFCNTKKMVDELCDELNKHNIKAISL-HGDMKQEFRSRVMEQFRSGNYPILIATDVAARG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           IDV D  +++  +        +H++ GR GR  +    I L  
Sbjct: 307 IDVDDIDLVVNFDIPQDNEYYIHRV-GRTGRAGKKGLAITLVS 348


>gi|257896496|ref|ZP_05676149.1| helicase [Enterococcus faecium Com12]
 gi|257833061|gb|EEV59482.1| helicase [Enterococcus faecium Com12]
          Length = 503

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 126/346 (36%), Gaps = 35/346 (10%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F   T  Q   I   L           I Q   G+GKT    + M   ++      Q +
Sbjct: 20  GFEEATPIQAETIPLALVGKDV------IGQAQTGTGKTAAFGLPMLEKIDPDRHELQGL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E + +  ++ ++ V+ + G      + + L+     + HI++GT   
Sbjct: 74  VIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLKD----RPHIVVGTPGR 129

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP--R 433
             D I  + L L  V        DE    G  + ++    Q       LL +AT  P  +
Sbjct: 130 MLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIIFQVPDQRQTLLFSATMPPAIK 189

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + +  +      KI  K      I    +     ++     ++   +  +   +  +  
Sbjct: 190 NIGVKFMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFDVQTPELTIVFGRT- 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+      E        IHG +S   + SV+ SFK+G   +L+AT V   
Sbjct: 249 -------KRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAAR 301

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKGGMSVTFVTPN 346


>gi|198470572|ref|XP_001355346.2| GA10556 [Drosophila pseudoobscura pseudoobscura]
 gi|198145515|gb|EAL32403.2| GA10556 [Drosophila pseudoobscura pseudoobscura]
          Length = 939

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 148/410 (36%), Gaps = 51/410 (12%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
             F++       ++    Q   +     PT  Q       L        ++ I Q   GS
Sbjct: 238 ANFEECSLPAHVIDEMKRQGFTK-----PTAIQSQGWPIAL----SGRDLVGIAQ--TGS 286

Query: 305 GKTLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEI 354
           GKTL  ++     +          G  A+++AP   LAQQ    ++ Y      +I    
Sbjct: 287 GKTLAYMLPAIVHIGKQPPILRGEGPIALVLAPTRELAQQIQSVVRDYGHLCQPEIRHTC 346

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRF 406
           I G   +  + + LER       +II T     D ++           L+L   D     
Sbjct: 347 IFGGSSKVPQARDLER----GVEVIIATPGRLIDFLENRNTNLARCTYLVLDEADRMLDM 402

Query: 407 GV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI----TEKPAGRKP--- 457
           G   Q R  + Q      V++ +AT       L      D  +I        A       
Sbjct: 403 GFEPQIRKIIEQIRPDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQI 462

Query: 458 --IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             I T +    R+  +++ +    +       I   +E K +       +    +     
Sbjct: 463 VEICTEMEKPQRMVRLLKEIAPTNNSANNGNKIIIFVETKIKVE-----DILQIIRTEGY 517

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            + +I HG  +  +++SV+  F+NG   +LIAT V   G+DV D   +I  +  +     
Sbjct: 518 IATSI-HGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENY 576

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           +H++ GR GR +++ +    + P  +K +   +SVL+        A  DL
Sbjct: 577 VHRI-GRTGRCQQLGTAYTFFTPDNAKQARELISVLEEAGQTPSQALLDL 625


>gi|62089534|gb|AAH92240.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Mus musculus]
          Length = 1027

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 427

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 428 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 487

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 488 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 544 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 596

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 597 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 715

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 716 KGYAYTFITEDQARYAGDIIKALE 739


>gi|323141176|ref|ZP_08076077.1| putative DEAD-box ATP-dependent RNA helicase CshA
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414319|gb|EFY05137.1| putative DEAD-box ATP-dependent RNA helicase CshA
           [Phascolarctobacterium sp. YIT 12067]
          Length = 418

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 74/364 (20%), Positives = 144/364 (39%), Gaps = 36/364 (9%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
              + V     +++ +     P   QE AI  +            I +   G+GKTL  L
Sbjct: 5   FAALKVCAHTVEQLQKMGIKKPMPVQEQAIPALFAGRDV------IARAQTGTGKTLAFL 58

Query: 312 IAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           + +A  ++      QA+++ P   LAQQ    +KK    + I V  +TG      ++  L
Sbjct: 59  VPLAEKIDTAKSYVQALVITPTRELAQQIATEMKKILGESDIKVLAVTGGRDFETQKYKL 118

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATA 420
           E    G++H++IGT     D I+           L+L  VDE  + G             
Sbjct: 119 E----GRSHVLIGTPGRLLDHIRKGNTDLGGVRYLVLDEVDEMLQQGFMDEAL------- 167

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              L+    P  +T++ ++    ++ K+  K      +  +      ++++ +       
Sbjct: 168 --ELIAMTAPEHQTMLCSATLSEEVRKLGRKLTKNCALIDINPDQATVEKIKQVCLKTTD 225

Query: 481 EGKKAYW--ICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMD 535
           E K      +  ++       F    ER   L +       ++ ++HG MS   +++VM 
Sbjct: 226 EYKNKAVAALIDRLNPYLMIVFCMSKERTKELGDWLGMQGYNVDVLHGEMSPAKRKTVMK 285

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +F++   ++L+A+ +   G+DV   + ++  +  H     +H++ GR GR       I L
Sbjct: 286 AFRDAKIQILVASDLAARGLDVEGVTHVVNYDIPHDVDWYVHRI-GRTGRAGNEGEAITL 344

Query: 596 YHPP 599
           Y   
Sbjct: 345 YTAD 348


>gi|262275389|ref|ZP_06053199.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
 gi|262220634|gb|EEY71949.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
          Length = 436

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 72/384 (18%), Positives = 143/384 (37%), Gaps = 45/384 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  +L+          +     G+GKT   ++ +   +  GG+       A
Sbjct: 23  TPSPIQMQAIPAVLEGKDV------MAAAQTGTGKTAGFVLPILERLSNGGRTRPNHVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q +E    Y+++  +   ++ G +    +  AL +       I++ T  
Sbjct: 77  LILTPTRELAAQIHENAVVYSRHLPLRSSVVFGGVKINPQMMALRK----GTDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      L +        +L +   P  R  +L S
Sbjct: 133 RLLDLYQQNAVKFSQLEVLVLDEADRM-----LDMGFFRDIKKILDLL--PKNRQSLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +E+      + KK   +   I++     
Sbjct: 186 ATFSDEIRNLAKGLVNNPVEISVTPANSTARTVEQCIYPADKKKKPAMLSKLIKDGDWKQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    +          + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFTRTKHGANKLARFLNEEGITAAPIHGNKSQSARTKALADFKTGDVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++     H     +H++ GR GR  E    I L     + + +    +++ 
Sbjct: 306 GIDIPQLPQVVNFEIPHVAEDYVHRI-GRTGRAGEPGKAISLVCADEADDLFGIERLIQQ 364

Query: 614 T-----EDGFL----IAEEDLKQR 628
                   GF     + E+ L  R
Sbjct: 365 LLPRQELAGFKPTNPLPEKALDTR 388


>gi|264681499|ref|NP_001161137.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Rattus
           norvegicus]
 gi|261263564|gb|ACX55119.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Rattus
           norvegicus]
          Length = 652

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 69/379 (18%), Positives = 143/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSG T   L+ + + +   G          
Sbjct: 196 PTPVQKHAIPIIKE------KRDLMACAQTGSGCTAAFLLPILSQIYTDGPGEALKAMKE 249

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 250 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLER- 308

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 309 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 365

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  +D+    
Sbjct: 366 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDK-RSF 423

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   +       +E KK        +   +       +   IHG  S  D+E  +
Sbjct: 424 LLDLLNATGRDSLTLVFVETKK------GADSLENFLFQERYACTSIHGDRSQKDREEAL 477

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 478 HQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 536

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 537 FFNERNLNITKDLLDLLVE 555


>gi|115840564|ref|XP_785431.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48
           [Strongylocentrotus purpuratus]
          Length = 360

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 138/377 (36%), Gaps = 34/377 (9%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG- 322
           + R + F  P+  Q+ AIK +++          I Q   G+GKT    I++   ++    
Sbjct: 1   MTRELGFEKPSAIQQRAIKPVVKGRDV------IAQAQSGTGKTATFSISILQCLDTQVR 54

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             QA+I++P   LA Q  + I        +      G        + L+       H++ 
Sbjct: 55  ETQALILSPTRELANQIQKVILALGDYMSVQCHSCIGGTNVGEDIRKLDFGQ----HVVS 110

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATP 430
           GT     D I+   L        +L   DE    G ++++         A  V+L +AT 
Sbjct: 111 GTPGRVFDMIRRRNLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLFSATL 170

Query: 431 IPRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               L +TS    D  +I  K      + IK   + + R +   + L          Y  
Sbjct: 171 PHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDT 223

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
               +     N +  V+           +++ +HG M   ++E++M  F++G  ++LI T
Sbjct: 224 LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKEREAIMKEFRSGASRVLITT 283

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S++I  +  +     +H++ GR GR       I        +      
Sbjct: 284 DVWARGLDVQQVSLVINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKSDDIRILRDIE 342

Query: 609 SVLKNTEDGFLIAEEDL 625
                  D   +   DL
Sbjct: 343 QYYSTQIDEMPMNVADL 359


>gi|71024093|ref|XP_762276.1| hypothetical protein UM06129.1 [Ustilago maydis 521]
 gi|74699014|sp|Q4P184|FAL1_USTMA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|46101778|gb|EAK87011.1| hypothetical protein UM06129.1 [Ustilago maydis 521]
          Length = 397

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 136/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+ AI  I++          I Q   G+GKT    I+M  +++      QA++++
Sbjct: 46  KPSAIQQRAILPIIRGRDV------IAQAQSGTGKTATFSISMLQSIDTTLRETQALVLS 99

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+       HI+ GT     D
Sbjct: 100 PTRELAIQIQSVVLALGDYLNVQCHACIGGTSVGEDIRKLDYGQ----HIVSGTPGRVYD 155

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        IL   DE    G + ++         +  V+L++AT     L +T
Sbjct: 156 MIRRRHLRTKNIKMLILDESDELLNMGFKDQIYDVYRYLPPSTQVVLLSATLPQDVLEMT 215

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    D  +I  K      + IK   + + + +   + L  +       +A   C     
Sbjct: 216 SKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT--- 272

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R  V+  ++  +     ++ +HG M   +++ VM  F+ G+ ++LI T V   G
Sbjct: 273 ------RRKVDWLSAKMKENNFQVSSMHGEMQQKERDEVMAEFRQGSSRVLITTDVWARG 326

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           ID+ + S++I  +        +H++ GR GR       I        +            
Sbjct: 327 IDIANISLVINYDLPTNRENYIHRI-GRSGRFGRKGVAINFVTVDDVRTLRDIEQFYSTQ 385

Query: 615 EDGFLIAEEDL 625
            D   +  ED+
Sbjct: 386 IDEMPVKLEDM 396


>gi|326578004|gb|EGE27868.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis O35E]
          Length = 581

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 129/351 (36%), Gaps = 22/351 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA------AVEAGGQAV 325
           +PT  Q  AI   L           +L    GSGKT   ++ +         +E   QA+
Sbjct: 40  TPTPIQAKAIPHALNGRD------LLLSAQTGSGKTAAFVLPVLDKMSRKPTIEKHVQAL 93

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           I+ P   LA Q  + +++Y    + +  + + G  P   + +AL++       +II T  
Sbjct: 94  ILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKK----GVQVIIATPG 149

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D ++  ++ L  +D         R+     A     +L       +T++ ++  D  
Sbjct: 150 RLIDHMREGRVDLSKLD-MLILDEADRMLDMGFADDIKEILQNTPQTRQTVMSSATWDGA 208

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
           + KI E         ++ +    IDE +        +      +    + K+   F   +
Sbjct: 209 VGKIAESFTVNPEKVSIKVESAHIDESVYYCDDFNHKNNILLQVLNNPKIKQAVIFAATK 268

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              E+  +           +HG +    +  ++   K+G C +L+AT V   GID+   S
Sbjct: 269 MSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARGIDISAIS 328

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +I  +        +H++ GR GR       + L     ++        LK
Sbjct: 329 HVINYDLPRQVEDYVHRI-GRCGRAGRTGVAVNLCSINDNRQLEHINRYLK 378


>gi|300856701|ref|YP_003781685.1| putative RNA helicase [Clostridium ljungdahlii DSM 13528]
 gi|300436816|gb|ADK16583.1| predicted RNA helicase [Clostridium ljungdahlii DSM 13528]
          Length = 525

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 73/361 (20%), Positives = 138/361 (38%), Gaps = 37/361 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N++ K+ Q I       P++ Q  +I  IL           I Q   G+GKTL     M
Sbjct: 9   LNLDPKVLQAIDDMGFEEPSQIQAESIPVILDG------NDVIGQAQTGTGKTLAFGAPM 62

Query: 315 AAAVEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
            + +    +   A+I+ P   LA Q  + + +  +  ++ +  I G  P   + ++L+R 
Sbjct: 63  LSKITTKSKHISALIVTPTRELAIQVNDELSRIAKFKKVALLPIYGGQPIDRQIRSLKRG 122

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHV 423
                 +++GT     D I+   L L  +        DE    G  + ++   KAT    
Sbjct: 123 M----DVVVGTPGRILDHIKRKTLDLSNIEFLILDEADEMLDMGFIEDIENIIKATNSD- 177

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
                    +TL+ ++     I K++ +          I       +  ++    + +  
Sbjct: 178 --------RQTLLFSATMPDQIKKLSSRYMKSNIKSIKIAKNTLTVDKTKQYYYEIKQKD 229

Query: 484 KAYWICPQI---EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
           +   +C  +   E      F       + L E   +    +  +HG M    + + +  F
Sbjct: 230 RFESLCRILDVDEPSSAIIFCKTKRGVDELVEGLQARGYNVEGMHGDMGQNQRLNTLRKF 289

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G+ + L+AT V   GIDV + S +I  +      + +H++ GR GR  +      L  
Sbjct: 290 KEGSLEFLVATDVAARGIDVENVSHVINYDLPQDTESYVHRI-GRTGRANKEGIAYSLVT 348

Query: 598 P 598
           P
Sbjct: 349 P 349


>gi|307173398|gb|EFN64357.1| Probable ATP-dependent RNA helicase DDX5 [Camponotus floridanus]
          Length = 639

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/369 (21%), Positives = 132/369 (35%), Gaps = 49/369 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            PT  Q       L        ++ I Q   GSGKTL  ++     +          G  
Sbjct: 160 QPTPIQAQGWPIAL----SGRDLVAIAQ--TGSGKTLGYILPAIVHIIHQPRLSNGDGPI 213

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  E    + +   +    I G  P+  +   LER       I I T 
Sbjct: 214 VLVLAPTRELAQQIQEVANCFGETAAVRNTCIFGGAPKGPQAHDLER----GIEICIATP 269

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 270 GRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKE 329

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L    L D     I           T II +               +  K Y +  +
Sbjct: 330 VRALAEDFLTDYVHLNIGSLTLSANHNITQIIDV----------CHEYEKDSKLYRLLQE 379

Query: 492 IEEKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           I  +KE+         R V +   ++      +++I HG  +  +++ V+  F++G   +
Sbjct: 380 IGTEKENKTIIFVETKRKVDDITRNIRRDGWQAVSI-HGDKNQQERDHVLQEFRSGRAPI 438

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT V   G+DV D   +I  +        +H++ GR GR  +  +    +     K++
Sbjct: 439 LVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRI-GRTGRRRQTGTAYAFFTSHNMKHA 497

Query: 605 YTRLSVLKN 613
              + VL+ 
Sbjct: 498 GDLIEVLRE 506


>gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
 gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
          Length = 695

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 134/371 (36%), Gaps = 42/371 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA------- 317
           L  + +  P+  QE  I  +L           +     G+GKT    +   +        
Sbjct: 119 LEEVGYEKPSPIQEQTIPLLLDGKDV------VGLAQTGTGKTAAFALPALSRMAELADI 172

Query: 318 --VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHG 374
             V    Q +++AP   LA Q  E    Y  + +   V  I G  P   +   L R    
Sbjct: 173 NGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRR---- 228

Query: 375 QAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVL 424
            A +++GT     D ++   L        +L   DE  R G  + ++   + T     V 
Sbjct: 229 GAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAKQVA 288

Query: 425 LMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT     R +    L D    ++  K      I+   + +    ++    +V+  E 
Sbjct: 289 LFSATMPNSIRKIAQQYLNDPTEVRVKTKTTTGANIRQRYMQVMHSHKLDAMTRVLEVEN 348

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                +  + +++ E       E  + L      + AI +G +    +E  +D+ ++G  
Sbjct: 349 YDGIIVFVRTKKETE-------EVADKLKARGFQAAAI-NGDIPQQLRERTVDALRDGRI 400

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+DV   S+++  +  H   + +H++ GR GR       IL   P    
Sbjct: 401 DILVATDVAARGLDVERISLVVNYDIPHDTESYVHRI-GRTGRAGRDGEAILFVTPREKY 459

Query: 603 NSYTRLSVLKN 613
                    + 
Sbjct: 460 MLRQIEKATRQ 470


>gi|54302687|ref|YP_132680.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46916111|emb|CAG22880.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 431

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/394 (16%), Positives = 134/394 (34%), Gaps = 44/394 (11%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           N   +I + +        T  Q  AI    +          +     G+GKT    + + 
Sbjct: 7   NFSPEIVRALTECGYEKLTPIQAQAIPHARRG------SDILANAQTGTGKTAAFSLPII 60

Query: 316 AAVEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             +            +A+I+AP   LA Q  + I +YT+ T +    I G    + + + 
Sbjct: 61  QQILEKPKSRGRFNVRALILAPTRELAAQIAQNIAEYTKYTDLKTAAIYGGTKMSSQERT 120

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGV--QQRLKLTQK 417
           LE+       I++ T     + +    + L  +        D     G     R  + + 
Sbjct: 121 LEK----GVDILVATPGRLIEHVDLKNVSLANIEFLVFDEADRMLDMGFITDMRKVMGEV 176

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERL 475
            T P +++ +AT   +   L S       +I    +      +  V+ P+++  +     
Sbjct: 177 NTNPQIMMFSATSSKQMNALASDILRKPKRIMVDRENTTADTVSHVVYPVDQERKRELLS 236

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +++  +  K   +    +E       +  E    L +    ++ + HG  +   +   +D
Sbjct: 237 ELIGKKNWKQVLVFVNYKE-------TANELVKELKKDGIKAV-LCHGDKAQSARRRALD 288

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G  ++++AT V   G+D+     ++  +        +H++ GR GR       I  
Sbjct: 289 EFKEGKARVMVATEVAARGLDIQALPHVVNFDMPFLAEDYVHRI-GRTGRAGLKGHAISF 347

Query: 596 YHPPLSKNSYTRLSVLKNTED-----GFLIAEED 624
                         ++          G+  A  D
Sbjct: 348 VSKEEELTLVQVEQLIGQRIHRVQLLGYEPANRD 381


>gi|88808892|ref|ZP_01124401.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
 gi|88786834|gb|EAR17992.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
          Length = 607

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 130/343 (37%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q++A  +++           + Q   G+GKT    + +   +E   +  + +++A
Sbjct: 79  EPSPIQKAAFPELMLGRD------LVGQAQTGTGKTAAFALPLLERLEGRSSKPRVLVLA 132

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  K Y   +  + V  I G      +   L+R       +++GT     
Sbjct: 133 PTRELAMQVADSFKAYAAGHPHLNVLAIYGGSDFRSQIHTLKR----GVDVVVGTPGRVM 188

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPI--PRTL 435
           D ++           L+L   DE  R G    ++    Q      V+L +AT     R L
Sbjct: 189 DHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVVLFSATMPNEIRRL 248

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L +     I  K    K I+   I +    ++    +V+ +   +   I  +    
Sbjct: 249 SKRYLQEPAEITIKTKDREAKRIRQRSITMQNSHKIEALNRVLEAVTGEGVIIFART--- 305

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +++        E     +A+++G +    +E  +D  + GT  +L+AT V   G+
Sbjct: 306 -----KAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKGTVNILVATDVAARGL 360

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV    ++I  +      A +H++ GR GR       IL   P
Sbjct: 361 DVDRIGLVINYDMPFDSEAYVHRI-GRTGRAGRTGEAILFVTP 402


>gi|269104380|ref|ZP_06157076.1| ATP-dependent RNA helicase DbpA [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161020|gb|EEZ39517.1| ATP-dependent RNA helicase DbpA [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 437

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 86/452 (19%), Positives = 159/452 (35%), Gaps = 65/452 (14%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q  ++  IL           I QG  GSGKT    + +   +       Q +++ P 
Sbjct: 2   TPIQAQSLPIILAGQD------IIAQGKTGSGKTAAFGLGLLNNLNVKRFRVQTLVLCPT 55

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + I++  +    I V  + G MP   +  +LE      AHII+GT    ++ 
Sbjct: 56  RELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEH----GAHIIVGTPGRVEEH 111

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPRT--LVL 437
           ++   L        +L   D     G Q      +         LL +AT   +   +  
Sbjct: 112 LRKGNLSLDNLNTLVLDEADRMLEMGFQDAIDAVIDCAPKQRQTLLFSATYPTQIASIAN 171

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK--AYWICPQIEEK 495
           + +    + K+ E       I      ++  +E ++ ++++L++     A   C    E 
Sbjct: 172 SIMNKPAMVKV-EATHDNSSISQHFYKVDNNEERMDAVRLLLAKHHPESAVIFCNTKREA 230

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           +E     V E F++L          +HG +   +++  +    N +C +L+AT V   G+
Sbjct: 231 QEVADTLVDEGFSAL---------ALHGDLEQRERDRTLVRLANKSCSILVATDVAARGL 281

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+     +I  +        +H++ GR GR         L+              L    
Sbjct: 282 DIDALDAVINYHLARDTEVHVHRI-GRTGRAGSKGIACSLFSDKEHYKVALLEDYLDRPI 340

Query: 616 DG-------------FLIAEEDLKQRK-------EGEILGIKQSGMPKFLIAQ-----PE 650
            G             +  A   L            G+ILG    G      +Q       
Sbjct: 341 SGEALPDQSVLNQPPYRPAMVTLLIDGGKKQKVRPGDILGALTGGDKSIQGSQVGKIHIF 400

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
            + + + + R  AK  L +  +   ++G++ R
Sbjct: 401 DYCAYVSVQRDIAKAALKKLEN-GKIKGRNFR 431


>gi|218134053|ref|ZP_03462857.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991428|gb|EEC57434.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC
           43243]
          Length = 559

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 133/364 (36%), Gaps = 36/364 (9%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           + ++ F   +  Q  AI  +L+          + Q   G+GKT    I M  +++     
Sbjct: 41  IGDMGFEEASPIQAKAIPVVLEGKD------IVGQAQTGTGKTAAYGIPMLQSIDPKLKC 94

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QAV++ P   LA Q  + I+K  +    I V  + G      + K+L+        I++
Sbjct: 95  VQAVVLCPTRELAIQVADEIRKLAKYMSSIKVLPVYGGQEIVRQIKSLKT----GVQIVV 150

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++           +IL   DE    G ++ +   LTQ       ++ +AT 
Sbjct: 151 GTPGRVMDHMRRKTVKFDKVKMVILDEADEMLDMGFREDMETILTQMPEERQTVMFSATM 210

Query: 431 IPRTL--VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +    T   D ++ K+  K    + I+     +   ++     +++     K   +
Sbjct: 211 PKAIMDIARTFQNDAEVIKVVRKELTVENIEQYYFEVRSKNKDEILSRLIDIYNPKLSVV 270

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    +  + V +  + L      +  I HG M    ++ VM+ F+ G  ++LIAT
Sbjct: 271 F-------CNTKKQVDDLISELKGRGYFADGI-HGDMKQAQRDRVMNDFRKGKTEILIAT 322

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV D  I+   +        +H++ GR GR                       
Sbjct: 323 DVAARGIDVDDVDIVFNYDLPQDEEYYVHRI-GRTGRAGRAGLAFSFVTGKEIYKLKDIE 381

Query: 609 SVLK 612
              K
Sbjct: 382 RYCK 385


>gi|170750207|ref|YP_001756467.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656729|gb|ACB25784.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 506

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 131/356 (36%), Gaps = 27/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           +PT  Q  AI   ++                G+GKT    + +   +          G +
Sbjct: 24  APTPIQAQAIPPAMEGRD------LCGIAQTGTGKTAAFALPILHRLSLSDRRAPRRGCR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++++P   LA Q  E    Y ++      ++ G +  + + +AL         I++ T 
Sbjct: 78  VLVLSPTRELANQIAESFTDYGRHLSYTTTVVFGGVTISRQERALAP----GVDILVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    L L  V+        Q L L        ++ M      ++L  ++    
Sbjct: 134 GRLIDLVDRRSLTLEGVEILVLDEADQMLDLGFIHALKRIVKML-PEKRQSLFFSATMPK 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------E 497
           +I+ +  +     P++  + P+    E +E+  + +  G K   +   + +         
Sbjct: 193 NIAGLAAQYLT-DPVQVAVTPVATTAERVEQEVIFVHTGAKQALLGHILRDPAIERVLVF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   +R     +    + A IHG  S   +E  + +FK+G+C++L+AT +   GIDV
Sbjct: 252 TRTKHGADRVVRGLDKVGIAAAAIHGNKSQPQRERALAAFKDGSCRVLVATDIAARGIDV 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
              S ++  +  +   + +H++ GR  R       I   +            V + 
Sbjct: 312 EGVSHVVNFDLPNVPESYVHRI-GRTARAGADGLAISFCNDEEKAYLRDIERVTRQ 366


>gi|167576699|ref|ZP_02369573.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis TXDOH]
          Length = 465

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 82/460 (17%), Positives = 168/460 (36%), Gaps = 60/460 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 23  LAQLGYTVMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARRFD 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    + V  + G  P   + ++LE      AHII+
Sbjct: 77  VQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIIV 132

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 133 GTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVAR------LCPPTRQTL 186

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   ++  
Sbjct: 187 LFSATYPDGIAKLSQQFLRNP--KEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLKHY 244

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 245 RPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 305 VAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQEGWALSLASMDEMGRVGAIEQ 363

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILG--IKQSGMPKFLIA 647
            L    +   +A              E L+           G++LG     +G     I 
Sbjct: 364 ALGRDVEWHPLAELKADGNEPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGSQIG 423

Query: 648 QP--ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +       + + + R  A   L +  +   ++G+ +++ L
Sbjct: 424 KINVTEFSTYVALERGIAHDALRKL-NAGKIKGKRVKVRL 462


>gi|154492527|ref|ZP_02032153.1| hypothetical protein PARMER_02161 [Parabacteroides merdae ATCC
           43184]
 gi|154087752|gb|EDN86797.1| hypothetical protein PARMER_02161 [Parabacteroides merdae ATCC
           43184]
          Length = 419

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/345 (19%), Positives = 129/345 (37%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q  AI  +L           +     G+GKT    I +   +E         G +
Sbjct: 23  TPTPIQAEAIPVVLDG------SDLLGCAQTGTGKTAAFSIPIIQKIEERISRGRKPGIK 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  E    Y + T +   +I G + Q  +  ALER       ++I T 
Sbjct: 77  ALILTPTRELAIQIGESFTAYGRYTHVKHTVIFGGVGQKPQTDALER----GVDVLIATP 132

Query: 384 ALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D I     +   L   ++DE  R      +   +       +L       ++L  +
Sbjct: 133 GRLLDLINQGFIRLDTLEYFVLDEADRMLDMGFIHDIK------RILPLLPRKRQSLFFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-- 496
           +    +I ++       +P K  + P++   + I++    + + +K   +   +E++   
Sbjct: 187 ATMPPEIERLAGT-ILHEPEKVEVTPVSSTVDTIDQSVYFVEKVEKINLLKNLLEDRSLE 245

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  +   ++   +          IHG      ++  + SFK+ T ++LIAT +  
Sbjct: 246 SVLVFTRTKHGADKVARVLNKSGIGAEAIHGNKGQSARQRALSSFKDHTLRVLIATDIAS 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            GIDV   S +I  +  +     +H++ GR GR            
Sbjct: 306 RGIDVDHLSHVINYDLPNVPETYVHRI-GRTGRAGRSGIAFSFCD 349


>gi|34541680|ref|NP_906159.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis W83]
 gi|34397998|gb|AAQ67058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas
           gingivalis W83]
          Length = 427

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/361 (20%), Positives = 129/361 (35%), Gaps = 48/361 (13%)

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +G  A   +       T  Q + I  IL+          I     G+GKT   L+ +   
Sbjct: 14  DGLDAMNFIET-----TPVQAATIPPILEGRDV------IACAQTGTGKTAAYLLPILDR 62

Query: 318 VEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           + AG        AVIMAP   LAQQ  + ++ ++    +    I G        +    +
Sbjct: 63  LSAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAIYGGTDGVAWEQQRRGM 122

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAP 421
           A G A I+I T       +      L  V        D     G    +     Q  ++ 
Sbjct: 123 AMG-ADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQIYKQLPSSC 181

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             ++ +AT  P+   L +    D  ++              I I+R  E I +   +  E
Sbjct: 182 QTVMFSATMPPKIRKLAASILRDPIEVE-------------IAISRPPESIMQSAYICHE 228

Query: 482 GKKAYWICPQIEEKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            +K   +    E+            +  V    S       ++A +H  +    +E VM 
Sbjct: 229 AQKLPILRKLFEQSAPKRTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMR 288

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FKNG   +L+AT ++  GID+ +  ++I  +  H     +H++ GR  RG       + 
Sbjct: 289 DFKNGYVDVLVATDIVARGIDIDNIRVVINYDIPHDPEDYVHRI-GRTARGTNGEGLAIT 347

Query: 596 Y 596
           +
Sbjct: 348 F 348


>gi|54302911|ref|YP_132904.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           SS9]
 gi|46916335|emb|CAG23104.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           SS9]
          Length = 471

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 138/360 (38%), Gaps = 36/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  +++          +     G+GKT    + +   +  G +       A
Sbjct: 29  TPSPIQAQAIPAVIEGKDV------MAAAQTGTGKTAAFTLPVLERLSNGPRVKPNQVRA 82

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +  Y +N  +   ++ G +    +   L +     A +++ T  
Sbjct: 83  LVLTPTRELAAQVAESVALYAKNLPLSSAVVFGGVKINPQMMRLRQ----GADVLVATPG 138

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ ++ ++++DE  R      ++  +K       L+ A P  R  +L S
Sbjct: 139 RLLDLYNQRAVRFDQIEVLVLDEADRMLDMGFIRDIRK-------LLAAMPKQRQNLLFS 191

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               D  +   K     P++  + P N     +++    + + +KA  +   ++E     
Sbjct: 192 ATFSDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPVDKSRKANLLTKLLKENNWGQ 251

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               +  +    R  +  E      A IHG  S   +   + +FK+   ++L+AT +   
Sbjct: 252 VLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEIQVLVATDIAAR 311

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++     H     +H++ GR GR       I L      K+      ++K 
Sbjct: 312 GLDIEQLPQVVNFELPHVAEDYVHRI-GRTGRAGCEGQAISLVCADEYKDLAAIERLIKQ 370


>gi|302670646|ref|YP_003830606.1| RNA helicase DEAD/DEAH box family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302395119|gb|ADL34024.1| RNA helicase DEAD/DEAH box family [Butyrivibrio proteoclasticus
           B316]
          Length = 711

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 69/341 (20%), Positives = 127/341 (37%), Gaps = 38/341 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           +  Q++AI  ++Q          I Q   G+GKT    I +   V+      QAV++ P 
Sbjct: 83  SPIQKAAIPVMIQGKD------IIGQAQTGTGKTAAFGIPLLHQVDPANKHLQAVVLCPT 136

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + I+ + +    I V  + G    + + KAL         I++GT     D 
Sbjct: 137 RELAMQAADDIRDFAKYMFGIKVLAVYGGQDISRQIKAL----SNGVQIVVGTPGRVMDH 192

Query: 390 IQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           ++ +         L+L   DE    G ++ ++   +               +T + ++  
Sbjct: 193 MRRHTMKMKDVKVLVLDEADEMLDMGFREDIETILQGMPME---------RQTALFSATM 243

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---- 497
              I KIT+           + P       IE+    + +  K   +   ++        
Sbjct: 244 PEAILKITKTYQKSDAEYIKMTPKEITVAAIEQAYYRVPQKLKEDVLVRLMDYYNPARSL 303

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N + +V++     +        +HG +S   +++VM+ F+NG   +LIAT V   GI
Sbjct: 304 IFCNTKRMVDQLAESLKGKGYLADGLHGDLSQNQRDTVMNLFRNGRINILIATDVAARGI 363

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           DV     +   +        +H++ GR GR         L 
Sbjct: 364 DVSGVEAVFNYDIPEDIEYYVHRI-GRTGRAGRSGMSFTLV 403


>gi|253741975|gb|EES98832.1| Translation initiation factor eIF-4A, putative [Giardia
           intestinalis ATCC 50581]
          Length = 391

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 140/371 (37%), Gaps = 46/371 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q  AI  I+           I Q   G+GKT    I M   ++      QA+I++
Sbjct: 42  TPSAIQSQAIVPIISGKDT------IAQAQSGTGKTAAFTIGMLQRIDIAMKSPQAIILS 95

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + ++      Q+ V    G         A +       H+I+ T      
Sbjct: 96  PTRELALQTLKVVEGIGSRLQVEVAQCIGGTQVDDDITAAQ-----SCHLIVATPGRLLS 150

Query: 389 SIQYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLT 438
            +Q           +IL   DE    G  +++   +        ++L++AT  P  L LT
Sbjct: 151 LLQKKYVTTSNVKMVILDEADEMLSRGFTEQIVSIMKFMNADIQIVLVSATLPPEILELT 210

Query: 439 SLGDIDISKITEKPA--GRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE 494
                D   I  K A      I+  ++ +      EV+E +  VLS  ++    C  I  
Sbjct: 211 RQFMRDPVSILVKEAELTLDGIRQYVVELQDAWKTEVVEDIYKVLS-VQQGVIFCNSIAR 269

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            K        E    L      +I+ IH  +   ++  +M  F++G  ++LIAT +I  G
Sbjct: 270 VK--------ELAEKLKSAGH-TISCIHSELDQAERNKIMGEFRSGQTRILIATNIIARG 320

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV + S++I  +        LH++ GR GR       I                 +++ 
Sbjct: 321 IDVQNVSLVINYDIPREAETYLHRI-GRSGRFGRKGVAINFVTD-------KDKQSMQSI 372

Query: 615 EDGFLIAEEDL 625
            D F +  E+L
Sbjct: 373 TDKFNVTTENL 383


>gi|297579675|ref|ZP_06941602.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
 gi|297535321|gb|EFH74155.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
          Length = 464

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 128/344 (37%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A I++ T  
Sbjct: 77  LILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ---RMCKG-ADILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRK-------ILKLLPEKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                  +   K     P++  + P N     +E+        KK   +   ++E     
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|328711288|ref|XP_001948608.2| PREDICTED: ATP-dependent RNA helicase vasa, isoform A isoform 1
           [Acyrthosiphon pisum]
 gi|328711290|ref|XP_003244501.1| PREDICTED: ATP-dependent RNA helicase vasa, isoform A isoform 2
           [Acyrthosiphon pisum]
          Length = 579

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 134/369 (36%), Gaps = 38/369 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q+  I  I+        M+   Q   GSGKT   ++ +   + +  Q        
Sbjct: 183 TPTPIQKYCIPVII----SGRDMMATAQ--TGSGKTAAFVLPIVHTLLSQPQDLVFDRDY 236

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
                +IM+P   LA Q  + + K T  T I   I+ G     H+R  L        HI+
Sbjct: 237 CEPQCIIMSPTRELAIQIRDVVFKLTNGTCIKQSILYGGTATGHQRGTLAN----GIHIL 292

Query: 380 IGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T     D      + +  L   ++DE  R          +K      ++   T   +T
Sbjct: 293 VATPGRLNDFVGRGYVSFNSLRFFVLDEADRMLDMGFKPDIEKILNHETMVDVNT--RQT 350

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI  +++       +   +  I    + +++    +++ +K   +   +E 
Sbjct: 351 LLFSATLADDIQMLSKAYLKPNYVFVAVGEIGGACKDVKQEIREVTKFEKKKELIKVLES 410

Query: 495 KKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             +          +   +   +           IHG     ++E  +  FKN   K+L+A
Sbjct: 411 LGDCKGTMVFVEQKRNADFIAAFLSEKDYPTTSIHGDREQPEREQALRDFKNNRMKILVA 470

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH-PPLSKNSYT 606
           T V   G+D+   + +I  +        +H++ GR GR       +  Y     S  S  
Sbjct: 471 TAVAARGLDIKGVNCVINFDMPSSIDEYVHRI-GRTGRLGNSGRAVSFYDSTSDSNLSSD 529

Query: 607 RLSVLKNTE 615
            + +LK  E
Sbjct: 530 LVRILKQAE 538


>gi|153835022|ref|ZP_01987689.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
 gi|148868543|gb|EDL67640.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
          Length = 430

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 144/371 (38%), Gaps = 27/371 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
             T  Q+ AI      M++K   +       G+GKT    + M   +   G+        
Sbjct: 23  KLTPIQQKAIP-----MARKGHDIF-ATAQTGTGKTAAFSLPMIQQLLESGRSASRKTAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+IMAP   LA+Q  + IK YT+ T + V  I G    + +  ALE    G   I++ T 
Sbjct: 77  ALIMAPTRELAEQIADNIKAYTKYTDLSVAAIFGGRKMSSQVTALE----GGVDILVATP 132

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
              ++ I+   + +  + E   F    R+       A   ++M     P+ ++ ++    
Sbjct: 133 GRLEEHIEQGNVSVANI-EFLVFDEADRILDMGFIHAVRKIMMDVDTDPQIMMFSATTSS 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---F 500
            ++ +  K   RKP +  +   N   + I  +   + + +K   +   I  K       F
Sbjct: 192 QLNLLA-KDILRKPKRIEVERANTTAQTIAHVLYPVDQERKTELLSELIGRKNWKQVLVF 250

Query: 501 RSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +  E  N + +          + HG  +   +   ++ FK G  ++++AT V   G+D+
Sbjct: 251 VNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARVMVATDVAARGLDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            D   ++  +        +H++ GR GR  +    +   +           ++++     
Sbjct: 311 EDLPHVVNYDMPFLAEDYVHRI-GRTGRAGKQGHAVSFVNREEELTVVQVENLIQQRIRR 369

Query: 618 FLIAEEDLKQR 628
             +A  + KQR
Sbjct: 370 IELAGYEPKQR 380


>gi|19075533|ref|NP_588033.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces pombe 972h-]
 gi|21542025|sp|O13370|DED1_SCHPO RecName: Full=ATP-dependent RNA helicase ded1; AltName:
           Full=Multicopy suppressor of overexpressed cyr1 protein
           2
 gi|2558968|gb|AAC04893.1| suppressor of uncontrolled mitosis [Schizosaccharomyces pombe]
 gi|3080516|emb|CAA18646.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces pombe]
 gi|3514095|gb|AAC34121.1| putative DEAD box RNA helicase Dep1 [Schizosaccharomyces pombe]
 gi|4582232|emb|CAB40192.1| putative RNA helicase [Schizosaccharomyces pombe]
          Length = 636

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/390 (15%), Positives = 137/390 (35%), Gaps = 56/390 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
            PT  Q+++I  +            +     GSGKT   L  + +     G A       
Sbjct: 191 QPTPVQKNSIPIVTSGRD------LMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQD 244

Query: 325 --------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                         +I+AP   L  Q +E  +K+   + +    + G      + + +++
Sbjct: 245 AGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQ 304

Query: 371 IAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPH 422
                  ++  T     D I   +        L+L   D     G + +++   +     
Sbjct: 305 ----GCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGAD-- 358

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
              MT+    +TL+ ++    DI ++  +   +  +   +  +    E I +  V + + 
Sbjct: 359 ---MTSVEERQTLMFSATFPRDI-QLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDS 414

Query: 483 KKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +K  ++   +               + + +       +       IHG  +  ++E  ++
Sbjct: 415 EKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALE 474

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G   +++AT V   G+D+ + + +I  +        +H++ GR GR       +  
Sbjct: 475 LFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGQAVAF 533

Query: 596 YHPPLSKNSYTRLSVLKNTED---GFLIAE 622
           ++      +   + +L+        FLIA 
Sbjct: 534 FNRNNKGIAKELIELLQEANQECPSFLIAM 563


>gi|171057308|ref|YP_001789657.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170774753|gb|ACB32892.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 479

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 71/383 (18%), Positives = 134/383 (34%), Gaps = 42/383 (10%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            + ++ K+ + I+     + T  Q  AI  +L           +     G+GKT    + 
Sbjct: 19  SLPLDPKLLRAIVDAGYLTMTPIQAKAIPIVLDGRDV------MGAAQTGTGKTAAFSLP 72

Query: 314 MAAAVEAG-----------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           +   +               +A+++AP   LA Q    +K Y +++Q+ V  + G +  A
Sbjct: 73  LLQKMLRHENASASPARHPVRALVLAPTRELADQVANNVKTYARHSQLRVTCVFGGIDMA 132

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFG-----VQQRL 412
            +   L+R       ++I T     D IQ     L  V     DE  R          + 
Sbjct: 133 PQTAELKR----GVEVLIATPGRLLDHIQAKNCQLNQVEYVVLDEADRMLDIGFLPDLQR 188

Query: 413 KLTQKATAPHVLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
            L+        LL +AT  P    L  + L D  + ++    A    ++     +   D+
Sbjct: 189 ILSYLPKTRQTLLFSATFSPEIKKLAQSYLQDPLLVEVARPNATATNVEQRFYSVTDDDK 248

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
               L ++         +          N +    R     E      + +HG  S  ++
Sbjct: 249 RRTVLHILRERSITQAIVFV--------NSKLGAARLARSFERDGLRTSALHGDKSQDER 300

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
              +D+FK G   +L+AT V   G+D+ D   +   +        +H++ GR GR     
Sbjct: 301 LKALDAFKRGEVDVLVATDVAARGLDIADLPAVFNFDIPFNAEDYVHRI-GRTGRAGASG 359

Query: 591 SCILLYHPPLSKNSYTRLSVLKN 613
             + L     ++       ++K 
Sbjct: 360 LAVSLVSHDDNRLVSDIEQLIKK 382


>gi|316971006|gb|EFV54849.1| eukaryotic initiation factor 4A [Trichinella spiralis]
          Length = 465

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 77/367 (20%), Positives = 142/367 (38%), Gaps = 48/367 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AI    Q      R   I Q   G+GKT    I +   +       QA++MA
Sbjct: 107 KPSVIQQLAIVPCCQ------RRDVIAQAQSGTGKTATFAIGLLQQINTDFNDCQALVMA 160

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + I     +  + V    G    A  R+ L +      H+ +GT     D
Sbjct: 161 PTRELAQQIQKVILALGDHMGVKVLTCIGGTSVATNREKLGQ----GCHVAVGTPGRVLD 216

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+ + L        +L   DE    G +Q++    +     V         + ++L++ 
Sbjct: 217 MIRGHHLQTKGIKTFVLDEADEMLSRGFKQQIHEVFEFMPADV---------QVVLLSAT 267

Query: 441 GDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
              ++ ++T K     P++ ++      +D + +    V  E  K   +C         K
Sbjct: 268 MPDEVLQVTTKFMN-NPVRILVRKEELTLDGIRQFYIEVGREEWKLDTLCDIYTTLSISK 326

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +  ++   L    T     +  +HG M+  D++ +M  F+ G+ ++LI+T ++  
Sbjct: 327 AVIFCNSRQKVEKLARELTDRKFTVTCMHGDMTQQDRDVIMQQFRTGSSRVLISTDLLAR 386

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQL------RGRVGRGEEISSCILLYHPPLSKNSYTR 607
           GID+   SI+I  +  H     +H+        GR GR   +   I       ++N    
Sbjct: 387 GIDIQQVSIVINYDIPHNRENYIHRYEQPAVFIGRSGRFGRVGVAINFV----TENDKRM 442

Query: 608 LSVLKNT 614
           +  ++  
Sbjct: 443 MKDIEEF 449


>gi|107103467|ref|ZP_01367385.1| hypothetical protein PaerPA_01004537 [Pseudomonas aeruginosa PACS2]
          Length = 449

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 127/344 (36%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQ------- 323
           +PT  Q  AI   L+          +     G+GKT    + +   +   G Q       
Sbjct: 23  TPTPIQAQAIPPALKGRD------LLAAAQTGTGKTAGFALPLLQRLTLEGPQVAANSVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA+Q +  ++ Y Q+  +   +  G +    +   L +       I++ T 
Sbjct: 77  ALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRK----GVDILVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++++ +L  +++DE  R        L          L  A P  R  +L 
Sbjct: 133 GRLLDLYRQNAVKFAQLQALVLDEADRM-------LDLGFARELDELFAALPRKRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +   +   R P+   + P N   + + +  V + + +KA   C  ++  +  
Sbjct: 186 SATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWH 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R  VE    L +    +   IHG      +   +  FK G   LL+AT V  
Sbjct: 246 QALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            G+D+ +  +++  +        +H++ GR GR       + L 
Sbjct: 306 RGLDIEEMPLVVNFDLPIVAEDYVHRI-GRTGRAGASGQAVSLV 348


>gi|62261419|gb|AAX77988.1| unknown protein [synthetic construct]
          Length = 604

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 139/351 (39%), Gaps = 44/351 (12%)

Query: 269 IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM-----AAAVEAGG 322
           + +  PT  Q+ AI  IL           + Q   G+GKT    + +      A+ +   
Sbjct: 51  LGYENPTPIQQYAIPYILSGRDV------LGQAQTGTGKTAAFALPLINNMDLASRDRAP 104

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E  + + +N   + V  I G      + +AL++       +++G
Sbjct: 105 QVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQ----GVKVVVG 160

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I+           L+L   DE  R G    +K      +            +
Sbjct: 161 TTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQC---------Q 211

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ I E+   R P K  +    +    + +  +V+   +K   +   +E
Sbjct: 212 RLLFSATIPTDIADIIEEYL-RNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLE 270

Query: 494 EKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            ++            S +E  ++L       +A I+G M    +E ++D F++    +L+
Sbjct: 271 TEETDGVIIFVKTKTSTIEVADNLK-ALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 329

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           AT V+  GID+   S +I  +  +     +H++ GR GR     + I L  
Sbjct: 330 ATDVVARGIDLERISHVINYDMPNDTDTYVHRI-GRTGRAGREGTSISLVP 379


>gi|325184962|emb|CCA19454.1| DEAD box ATPdependent RNA helicase putative [Albugo laibachii Nc14]
          Length = 399

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 137/372 (36%), Gaps = 39/372 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK  +Q          I Q   G+GKT V  I++   +       QA++++
Sbjct: 48  KPSAIQQRAIKPAVQGRDV------IAQSQSGTGKTAVFSISILQTINSTSNETQALVIS 101

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q  + +        +      G        + L+        ++ GT     D
Sbjct: 102 PTRELAEQTQKVMLALGDYMNVQCHACIGGKSMGEDMRRLDY----GVQVVSGTPGRIFD 157

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        ++   DE    G + ++    +            P  + LV+++ 
Sbjct: 158 MIRRRHLRTRTIKLLVIDEADEMLNKGFKDQIYDIYRYLP---------PSTQVLVVSAT 208

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K    +P+K ++       E I++  V +  E  K   +C   +      
Sbjct: 209 MPQDVLDLTTKFMN-EPVKVLVKRDELTLEGIKQFFVAVEQEEWKFDTLCDLYDTLTITQ 267

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N +  V+   +       +++ +HG M   +++++M  F++G  ++LI T +   
Sbjct: 268 AVIFCNTKRKVDWLTTKMREANFTVSSMHGDMPQRERDTIMQEFRSGGSRVLITTDIWGR 327

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV   S++I  +  +     +H++ GR GR       I        +           
Sbjct: 328 GLDVQQVSLVICYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKDEDVRILRDIEQYYST 386

Query: 614 TEDGFLIAEEDL 625
             D   +   DL
Sbjct: 387 QIDEMPMNIADL 398


>gi|303231880|ref|ZP_07318591.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513487|gb|EFL55518.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 523

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 93/440 (21%), Positives = 160/440 (36%), Gaps = 66/440 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            PT  Q+ AI   +           I Q   G+GKT    + +   V+      Q VI++
Sbjct: 25  EPTPIQQEAIPVAMSGKD------MIGQAQTGTGKTAAFGLPVLERVDGSNRHVQVVILS 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + K  Q T I    I G      + +AL++       II+ T     D
Sbjct: 79  PTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKK----NPQIIVATPGRLMD 134

Query: 389 SIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            +            ++L   DE    G    +     A              +TL+ ++ 
Sbjct: 135 HMDRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPED---------HQTLLFSAT 185

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC-------PQIE 493
               I ++ E     +P    + P     ++IE+  + + + +K   +C       P++ 
Sbjct: 186 MPKTIRELAETYLT-EPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDLQAPELA 244

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R V E   +L +    +  I HG +S   ++SV+  F+ GT  +L+AT V   
Sbjct: 245 IIFTRTKRRVDEVTEALKKRGYMAEGI-HGDLSQQKRDSVIRQFREGTIDILVATDVAAR 303

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   S +   +      +  H++ GR GR  +         P   ++ +    + K 
Sbjct: 304 GLDISGVSHVYNYDLPQDPESYTHRV-GRTGRAGKAGEAYTFVIPREIEHLHAIERLTKR 362

Query: 614 TEDGFLIAEEDLKQRKE--GEILGIKQ----------SGMPKFLIAQPELHDSLLEIARK 661
                 IA    K+R    GE+L  +Q          +   + L       + LL     
Sbjct: 363 -----KIA----KRRAPSLGEVLEGQQRLAVESLIEMASNTEELALFKVNAEELLNDTDS 413

Query: 662 -----DAKHILTQDPDLTSV 676
                 A  +LT++PD T V
Sbjct: 414 VTLIAAALKLLTKEPDTTPV 433


>gi|302308420|ref|NP_985329.2| AFL221Cp [Ashbya gossypii ATCC 10895]
 gi|299790624|gb|AAS53153.2| AFL221Cp [Ashbya gossypii ATCC 10895]
          Length = 557

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 81/437 (18%), Positives = 158/437 (36%), Gaps = 61/437 (13%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE---IGIPINVEGKIAQKILRN 268
           P+  K+F       ++++ DE+          RK+ + +     +P  +           
Sbjct: 72  PKFEKNFYVEHEDVQKMSTDEVEQF-------RKENEMKIVGHDVPKPIRTFDEAGFPEY 124

Query: 269 I-------PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +        F  PT  Q       L           I     GSGKTL   +     + A
Sbjct: 125 VLKEVKEEGFEKPTAIQCQGWPMALSGRD------MIGVAATGSGKTLSYCLPGIVHINA 178

Query: 321 --------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                   G   +++AP   LA Q  +   K+ ++++I    + G +P++ + + L+R  
Sbjct: 179 QPLLSPGDGPVVLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPKSQQIRDLQR-- 236

Query: 373 HGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPH 422
                I+I T     D ++  K        L+L   D     G + +++    Q      
Sbjct: 237 --GVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 294

Query: 423 VLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLK 476
            L+ +AT     + L    L D     I           T    V+   ++ D +++ L+
Sbjct: 295 TLMWSATWPKEVQQLARDYLHDPIQVNIGSLELAASHTITQLVEVVSDFDKRDRLVKHLE 354

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           +   +      I         S  R+  E  + L +    ++AI HG     +++ V++ 
Sbjct: 355 IASKDKDSKIIIF-------ASTKRTCDEITSYLRQDGWPALAI-HGDKQQQERDWVLNE 406

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G   +++AT V   GIDV   + +I  +        +H++ GR GR     + I  +
Sbjct: 407 FRTGRSPIMVATDVAARGIDVKGINFVINYDMPGNIEDYVHRI-GRTGRAGATGTAISFF 465

Query: 597 HPPLSKNSYTRLSVLKN 613
                      +S+++ 
Sbjct: 466 TEANKTLGAQLISIMRE 482


>gi|254578784|ref|XP_002495378.1| ZYRO0B09856p [Zygosaccharomyces rouxii]
 gi|238938268|emb|CAR26445.1| ZYRO0B09856p [Zygosaccharomyces rouxii]
          Length = 540

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 146/381 (38%), Gaps = 45/381 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       L        M+ +     GSGKTL   +     + A        G  
Sbjct: 132 APTGIQCQGWPMAL----SGRDMVGV--AATGSGKTLSYCLPAIVHINAQPLLAPGDGPV 185

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +   K+ ++++I    + G +P+  + + L R     A I+I T 
Sbjct: 186 VLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPRGQQIRDLAR----GAEIVIATP 241

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 242 GRLIDMLEINKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 301

Query: 433 -RTLVLTSLGDIDISKITEKP----AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            + L    L D    +I           K +  VI    + D + + L++   +      
Sbjct: 302 VKQLARDYLTDPIQVQIGSLELSASHTIKQVVEVISEFEKRDRLSKHLEIASEDQDSKVL 361

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +         S  R+  +    L +   S++AI HG     +++ V++ FKNG   +++A
Sbjct: 362 VF-------ASTKRTCDDITQYLRQDGWSALAI-HGDKDQRERDWVLEEFKNGRSPIMVA 413

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV   + +I  +        +H++ GR GR     + I  +         + 
Sbjct: 414 TDVAARGIDVKGINYVINYDMPGNIEDYVHRI-GRTGRAGAKGTAISFFTEGNKGLGASL 472

Query: 608 LSVLKNTEDGFL--IAEEDLK 626
           +S+++  +      +A+ D K
Sbjct: 473 ISIMREAKQEIPADLAQYDRK 493


>gi|85540944|sp|Q569Z5|DDX46_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46
          Length = 1032

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 427

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 428 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 487

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 488 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 544 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 596

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 597 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 715

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 716 KGYAYTFITEDQARYAGDIIKALE 739


>gi|296116253|ref|ZP_06834870.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977187|gb|EFG83948.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 431

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 130/347 (37%), Gaps = 37/347 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q  AI  +LQ          +     G+GKT    + +   +          G +
Sbjct: 24  TPTPIQAGAIPYLLQGRD------LLGLAQTGTGKTAAFALPILNHLLTSKGRAHPKGAR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LA Q  +    Y ++ +    ++ G + Q  + +AL R       +++   
Sbjct: 78  ALVLAPTRELASQIADSFASYARHMKFTHAVVFGGVGQGRQIEALRR----GVDVLVAAP 133

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D      +    L ++++DE  R      ++  +K      ++ T     +TL+ +
Sbjct: 134 GRLLDLMGQGHVDLAGLEILVLDEADRMLDMGFVRDIRK------IVATLPTDRQTLLFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     IS++            V  P + +D + + +   +  G K   +   ++  K  
Sbjct: 188 ATMPKSISELAHGLLRDPATVQVTPPSSTVDRIRQAVMY-VDTGNKREALKLLVDSPKVE 246

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +    +  +       +   IHG  S   +E  M  F++G  K+L+AT +  
Sbjct: 247 RAVVFTLMKHEANKVAAFLNEHGITAEAIHGNKSQGARERAMSGFRSGAVKVLVATDIAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            GIDV D + +   +  +   + +H++ GR  R       + L    
Sbjct: 307 RGIDVDDVTHVFNYDLPNVPESYVHRI-GRTARAGRDGWAVSLCDAE 352


>gi|254473978|ref|ZP_05087371.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
 gi|211956867|gb|EEA92074.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
          Length = 483

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 134/354 (37%), Gaps = 27/354 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q   I  + +          +     G+GKT   ++ +   +            +
Sbjct: 24  APTPIQREVIPLMKEGED------ILGIAQTGTGKTAAFVLPLLTRLAEDRKKPAPHTCR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  E ++ Y Q     V +I G +    + +AL +       I+I T 
Sbjct: 78  ALILAPTRELASQIAESVRTYGQFIGPSVAVIFGGVKPGPQLRALSK----GLDIVIATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
              +D +    + L            Q L L        +L      + +T++L++   I
Sbjct: 134 GRLEDHMSTGGIKLDATTTVVLDEADQMLDLGFAPAIRRILG-KLPKVRQTVLLSATMPI 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------E 497
            I  +  K     P +  + P++R  E I++    L+   K   +   + E         
Sbjct: 193 QIRNLA-KEFLSNPHEISVAPVSRPIEKIDQSVRFLNSSSKRAALLDILSEDDIERAIVF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   +R +   E    S A IHG  S  ++E  +D FKNG  K+L+AT +   GID+
Sbjct: 252 TRTKRGADRVSGHLEKAGLSSAAIHGNKSQRNREKSLDGFKNGRIKILVATDIAARGIDI 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              S ++     +   A +H++ GR  R  +    + L              ++
Sbjct: 312 DGVSHVVNYELPNVPEAYVHRI-GRTARAGKSGVAVSLCDATEQPYLRDIERLI 364


>gi|209550473|ref|YP_002282390.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536229|gb|ACI56164.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 567

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 138/370 (37%), Gaps = 43/370 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--------GQ 323
           +PT  QE AI  +L+          I     G+GKT    + +   + A          +
Sbjct: 24  TPTPIQEQAIPLLLEGRD------LIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTTR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   L  Q  E +KK+ + + + + ++ G +    ++  LE+       +++ T 
Sbjct: 78  TLILAPTRELVNQIAETLKKFIRKSHLRINVVVGGVSINKQQLQLEK----GTDVLVATP 133

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPR 433
               D I            L+L   D+    G    L+   K        +L +AT    
Sbjct: 134 GRLLDLINRRAISLTTVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKRQTMLFSATMPKA 193

Query: 434 TLVLTSLGDIDISKITEKPAGR--KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L     +D  K+   P G+    ++  +  +   ++  E L+  L+E      I   
Sbjct: 194 IADLAGDYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKSLTENPDGRAIVFL 253

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   E+     E+   S+A IHG  S   +E  + +F++G+ K LIAT V 
Sbjct: 254 -------RTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTLIATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+   S +   +      A +H++ GR  R       I    P  +K       ++
Sbjct: 307 ARGIDIPAVSHVYNYDLPEVPDAYVHRI-GRTARAGRDGIAIAFCAPDEAKLLRDIERLM 365

Query: 612 KNTEDGFLIA 621
                G  IA
Sbjct: 366 -----GIDIA 370


>gi|123966425|ref|YP_001011506.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200791|gb|ABM72399.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9515]
          Length = 595

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 140/366 (38%), Gaps = 39/366 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMA 328
           PT  Q++AI +++           + Q   G+GKT    + +   +E       + ++M 
Sbjct: 74  PTPIQKAAIPELMLGRD------LLGQAQTGTGKTAAFALPIIEKLENNKESNAKVLVMT 127

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  K Y+ ++T +    I G     ++  +L+R    +  +++GT     
Sbjct: 128 PTRELATQVADSFKSYSVESTNLRTLAIYGGTDFRNQISSLKR----KTDVVVGTPGRIM 183

Query: 388 DSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D I+           L+L   DE  + G  + ++        +          + ++ ++
Sbjct: 184 DHIRQGTFKINNINCLVLDEADEMLKMGFLEDIEWIIDKLPEN---------KQMVLFSA 234

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I  I +K     P + +I  + +  ++I +  + +    K   +   +E   E  
Sbjct: 235 TMPNEIRNIAKKYLN-DPAEILIKSVKKETQLITQRYINVQRHHKLEALKRILEITNEGV 293

Query: 500 FRSVVERF-----NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
              V  +          E+   S+A+++G +    +E+ +D  K G   +L+AT V   G
Sbjct: 294 IIFVRTKLLTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVAARG 353

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV    ++I  +         H++ GR GR       IL  +           +  +N 
Sbjct: 354 LDVERIKLVINYDFPFDKETYTHRI-GRTGRAGRSGEAILFVNQREKHFLRNLENSTRNK 412

Query: 615 EDGFLI 620
            +   I
Sbjct: 413 IEEIEI 418


>gi|94501919|ref|ZP_01308429.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
 gi|94425972|gb|EAT10970.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
          Length = 614

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 153/422 (36%), Gaps = 44/422 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  QE +I  +L+          +     G+GKT    + + A  +      Q +++A
Sbjct: 28  QPSPIQEQSIPHLLEGKDV------LGLAQTGTGKTAAFTLPLLARTQNEVREPQVLVLA 81

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LAQQ    ++ Y+++ + + V  I G      + +AL++        ++GT     
Sbjct: 82  PTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFRALKQ----GPQWVVGTPGRVM 137

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRT--L 435
           D I+   L L  +        DE  R G    +     Q      + L +AT   +   +
Sbjct: 138 DHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPEKRQIALFSATMPKQIKAV 197

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L +    +I  K A  + I+     +  +D+    L++  +    A  +  +    
Sbjct: 198 AEKHLREPTEIRIKSKTATNESIEQKYWLVKGVDKNQALLRICETSEFDAMMVFVRT--- 254

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E               ++G ++   +E  +D  K G   +L+AT V   G+
Sbjct: 255 -----KQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDMLVATDVAARGL 309

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       IL   P   +   T   V +   
Sbjct: 310 DVERISHVVNYDIPYDAESYVHRI-GRTGRAGRSGEAILFVRPRERRMLSTIERVTRKKI 368

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLTS 675
               +           E+   ++       +   E  D  +EI +K A  IL + P L  
Sbjct: 369 QQIELPT-------AKEVNAKRRDQFKVRALEHIEGRD--IEIFKKIASEILAEQPALDP 419

Query: 676 VR 677
           + 
Sbjct: 420 IE 421


>gi|124810293|ref|XP_001348829.1| helicase 45 [Plasmodium falciparum 3D7]
 gi|23497730|gb|AAN37268.1| helicase 45 [Plasmodium falciparum 3D7]
 gi|83272531|gb|ABC00776.1| eIF4A-like [Plasmodium falciparum]
 gi|112434012|gb|ABI18354.1| eIF4A-like [Plasmodium falciparum]
          Length = 398

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 126/341 (36%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+  IK IL           I Q   G+GKT   +I+    +       QA+I+A
Sbjct: 45  KPSAIQQRGIKPILNGYDT------IGQAQSGTGKTATFVISSLQLINYDYVACQALILA 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + +       ++      G          L++      H+++GT     D
Sbjct: 99  PTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQ----GVHMVVGTPGRVYD 154

Query: 389 SIQYYKLI--------LVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
            I    L         L   DE    G + ++     +      V L +AT     L LT
Sbjct: 155 MIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVALFSATMPQEILELT 214

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D   I  K      + I+   + + + +  ++ L          Y      +   
Sbjct: 215 TRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTL-------CDLYETLTITQSII 267

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+       +   +++ +HG M   D++ +M  F++G+ ++L+ T ++  GID
Sbjct: 268 YCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGID 327

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   S++I  +        +H++ GR GR       I    
Sbjct: 328 VQQVSLVINYDLPASPDTYIHRI-GRSGRFGRKGVAINFVT 367


>gi|317127486|ref|YP_004093768.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315472434|gb|ADU29037.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 500

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 76/368 (20%), Positives = 138/368 (37%), Gaps = 43/368 (11%)

Query: 266 LRNIPFSPT-KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           +  + F  T   QE  I    +          I Q   G+GKT+   I     V   E  
Sbjct: 17  IEKMGFEETTPIQEKVIPLGKEGQD------IIGQAQTGTGKTVAFGIPCVEQVVVEEKH 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E + K  Q   I    I G      +  AL++    +  II+ 
Sbjct: 71  PQALVLTPTRELAIQVAEELNKLGQVKGIKALPIYGGQEITRQITALKK----RPQIIVA 126

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T   + D ++           ++L   DE    G  + +           +L       +
Sbjct: 127 TPGRYMDHMRRKTIRPEFLKIVVLDEADEMLSMGFIEDI---------ETILQEVPGERQ 177

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     +  I ++    KP+   +       E IE+  + LSE +K   +C  ++
Sbjct: 178 TLLFSATMPPKLKTIADRFMN-KPVSIAVKAKQLTVENIEQRYIALSEKEKFDTLCNLLD 236

Query: 494 EKK---ESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +       F     R + L E  +    ++  +HG M    ++ V+  FK G+  +++A
Sbjct: 237 METPELAIIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVMVA 296

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D S +I  +      + +H++ GR GR  +            +      
Sbjct: 297 TDVAARGLDVNDVSHVINFDLPQDSESYVHRI-GRTGRAGKKGISYSFV----THKEKDH 351

Query: 608 LSVLKNTE 615
           L  ++ + 
Sbjct: 352 LRYIEEST 359


>gi|199598808|ref|ZP_03212220.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|229551599|ref|ZP_04440324.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
           LMS2-1]
 gi|258509533|ref|YP_003172284.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|258540734|ref|YP_003175233.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|199590313|gb|EDY98407.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|229315064|gb|EEN81037.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
           LMS2-1]
 gi|257149460|emb|CAR88433.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|257152410|emb|CAR91382.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|259650800|dbj|BAI42962.1| RNA helicase [Lactobacillus rhamnosus GG]
          Length = 502

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 128/340 (37%), Gaps = 23/340 (6%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAV 325
            F   T  Q   I  +L+          I Q   G+GKT    + +   ++      QA+
Sbjct: 20  GFEEATPIQAETIPLVLEGKDV------IGQAQTGTGKTAAFGLPILQHIDKADRSIQAL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +++P   LA Q  E + +  ++ +I V+ + G      + + L         I++GT   
Sbjct: 74  VISPTRELAIQTQEELYRLGRDKKIKVQAVYGGADIRRQIRQLAD----HPQIVVGTPGR 129

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D I  + L L  +D        + L +        ++    T   +TL+ ++     I
Sbjct: 130 ILDHIGRHTLKLEHLDTLVLDEADEMLDMGFIDDIEKIVEQMPT-ERQTLLFSATMPAAI 188

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRS 502
            ++T K   ++P+   I       + +E+  V   + +K   +    + +       F  
Sbjct: 189 MRLTNKFM-KEPVIVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDPDLALIFGR 247

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L     +       IHG ++   + SV+  FK+G    L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            + +   +      + +H++ GR GR       +    P 
Sbjct: 308 VTHVYNYDIPQDPDSYVHRI-GRTGRAGHKGVSVTFVTPN 346


>gi|160420299|ref|NP_666087.3| probable ATP-dependent RNA helicase DDX46 [Mus musculus]
          Length = 1031

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 427

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 428 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 487

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 488 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 544 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 596

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 597 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 715

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 716 KGYAYTFITEDQARYAGDIIKALE 739


>gi|320546379|ref|ZP_08040695.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
 gi|320448989|gb|EFW89716.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
          Length = 530

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 70/368 (19%), Positives = 129/368 (35%), Gaps = 34/368 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     ++      QA+++A
Sbjct: 23  EPSPIQELTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLDKIDTSRNLVQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ +   + V  + G      + KAL       AHI++GT     D
Sbjct: 77  PTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLV 436
            I+   L L  V        DE    G        +++       LL +AT     + + 
Sbjct: 133 LIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLFSATMPEAIKRIG 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +  + + +  K+  K      +    I +   D+     +++  +  +   +  +     
Sbjct: 193 VKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMDVDQPELSIVFGRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D
Sbjct: 249 ----KRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + +   +      + +H++ GR GR  +    I    P           + K    
Sbjct: 305 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKQGQSITFVAPNEMGYLSIIEKLTKKRMK 363

Query: 617 GFLIAEED 624
           G   A  D
Sbjct: 364 GLKPATAD 371


>gi|291277508|ref|YP_003517280.1| DEAD box helicase family protein [Helicobacter mustelae 12198]
 gi|290964702|emb|CBG40557.1| DEAD box helicase family protein [Helicobacter mustelae 12198]
          Length = 513

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 69/341 (20%), Positives = 116/341 (34%), Gaps = 34/341 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQAVIMAPI 330
           PT  QE AI  ILQ          I Q   G+GKT    + +   +      +A+I+ P 
Sbjct: 40  PTPIQEQAIPAILQ------ERDVIAQAQTGTGKTAAFTLPILEMLHHNQSIEALIITPT 93

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             L  Q  + I K  +   I    + G      + + L +       I++ T     D +
Sbjct: 94  RELTMQVSDEIYKLGRPKNIKTVCVYGGQSIKRQCELLAK----NPQIMVATPGRLLDHL 149

Query: 391 QYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +  +L        +L   DE    G                 VLL +AT     + L   
Sbjct: 150 KSGRLDNFTPRFVVLDESDEMLDMGFLDDIEEIFNYLPNNIQVLLFSATMPEAIKKLAQR 209

Query: 439 SLGDIDISKIT-EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            L +    KIT         +      I   +     ++++ +E      I  +      
Sbjct: 210 ILHNPIHIKITPTANMTNLDVTQYYCVIGEGERQEALMRILDTENIYKSIIFTRT----- 264

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   +   +  E        +HG M   D+ + +  FK    K+L+AT V   G+D+
Sbjct: 265 ---KKEADGLYNFLEARGYKAGTLHGDMEQRDRRAAILDFKKCHYKILVATDVASRGLDI 321

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            D S +   +        +H++ GR GR  +    I    P
Sbjct: 322 SDVSHVFNYHIPTNSEVYVHRI-GRTGRAGKKGKAITFVTP 361


>gi|237806840|ref|YP_002891280.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237499101|gb|ACQ91694.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 489

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 68/371 (18%), Positives = 137/371 (36%), Gaps = 41/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVLAGQDV------MAAAQTGTGKTAGFTLPLLHRLSRGNPARSNAVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +  Y +   +   ++ G +    +  A+ +     A +++ T  
Sbjct: 77  LVLTPTRELAAQVAESVTTYGKYLPLKSVVVFGGVNINPQMLAMRK----GADVLVATPG 132

Query: 385 LFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D +      + +L ++I+DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 133 RLLDLVSQNALHFRQLEVLILDEADRMLDMGFIRDIRK-------IINMLPKDRQTLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               D  +   K    +P++  + P N   E I++    + +G+K   +C  I+      
Sbjct: 186 ATFSDEIRTLAKGLLNEPVQIDVAPRNTTAETIKQTICPVDKGRKPALLCHLIKHNNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    +  +  E      A IHG  S   +   +  FK+G+ ++L+AT +   
Sbjct: 246 VLVFMRTKHGANKLVTQLETAGIQAAAIHGNKSQGARTRALSGFKDGSVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++     +     +H++ GR GR       I L              ++K 
Sbjct: 306 GIDIAQLPQVVNYELPNIAEDYVHRI-GRTGRAGMEGHAISLVSADEQPLLVDVEKLIKQ 364

Query: 614 TE-----DGFL 619
                  DGF 
Sbjct: 365 ILPREEFDGFK 375


>gi|301612898|ref|XP_002935945.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 isoform 2
           [Xenopus (Silurana) tropicalis]
          Length = 1024

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 146/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 348 WVQCGISMKILNSLKKHAYEKPTPIQAQAIPAIMSGRD------LIGIAKTGSGKTIAFL 401

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 402 LPMFRHIMDQRPLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 461

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 462 QIAELKR----GAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQV 517

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
            +            P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 518 MRIIDNIR------PDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQH 570

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 571 VIVIEEEKKFLKLLELLGHYQEKGAVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQY 630

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNG CKLL+AT+V   G+DV    ++I     +     +H+  GR GR   
Sbjct: 631 DRDSIINDFKNGVCKLLVATSVAARGLDVKQLILVINYACPNHYEDYVHR-AGRTGRAGN 689

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 690 KGYAFTFITEDQARYAGDIIKALE 713


>gi|85712866|ref|ZP_01043908.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85693330|gb|EAQ31286.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 587

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 142/379 (37%), Gaps = 42/379 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + F+ PT  Q+ AI  +L+          + +   G+GKT    +   A++EA    
Sbjct: 23  LEALGFTQPTPIQQQAIPSLLEG------NDVLGEAQTGTGKTAAFSLPALASIEANQRQ 76

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++ P   LA Q  + I+ +++    + V  + G      + +AL+R     A +++
Sbjct: 77  TQMLVVTPTRELAIQVADAIESFSKQMKGMEVATVYGGSAFGPQIQALKR----GASVVV 132

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D +    L        +L   DE    G  + +           +L +     
Sbjct: 133 GTPGRLIDLLNKKVLKLDGLRFAVLDEADEMLNMGFIEDI---------ETILQSVPDTA 183

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +  + ++     I K+ +      P+   I P+ +    I +    +    K   +   +
Sbjct: 184 QRALFSATMPTAIRKLAKTYLT-DPVNIRIAPVEQAKANIRQRAWKVMGMTKMTALTRLL 242

Query: 493 EEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E  +          R        L +      A + G ++   +E  +   ++G  K+L+
Sbjct: 243 EVTEYQRALVFVRTRQDTMDVAELLQRQGFRAAPLSGDLNQAQREQTVTQLRSGHIKVLV 302

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V+  G+DV + + +I  +      + +H++ GR GR       IL Y          
Sbjct: 303 ATDVVARGLDVPEITHVINYDLPSDTESYVHRI-GRTGRAGRSGEAILFYRGKERHLLRH 361

Query: 607 RLSVLKNTEDGFLI--AEE 623
              +   + + F +  AEE
Sbjct: 362 YEKLTNGSIEYFDVPSAEE 380


>gi|328866692|gb|EGG15075.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 845

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 139/378 (36%), Gaps = 54/378 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------------ 320
           PT  Q+SA+  I   M +++ M        GSGKT   L  + +++              
Sbjct: 396 PTPVQKSALPII---MKERDLM---ACAQTGSGKTAAFLFPIISSILLDGAPEPPAAYRP 449

Query: 321 ------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                   +A+++AP   LAQQ YE   K++  + +   ++ G    + +   L+R    
Sbjct: 450 GVPRPVHPRALVLAPTRELAQQIYEESVKFSYGSPVASVVVYGGAEISQQIAELDR---- 505

Query: 375 QAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRL------KLTQKATA 420
              I++ T     D +   +        L+L   D     G + ++              
Sbjct: 506 GCDILVATTGRLVDLLSRGRVSLSQVKFLVLDEADRMLDMGFEPQIRQIIQDHDLPCNKD 565

Query: 421 PHVLLMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRK-PIKTVIIPINRIDEVIERLKV 477
              L+ +AT P P + L    L +    K+      +    +   +P +  +  +     
Sbjct: 566 RQTLMFSATFPKPIQNLASDFLDNYIFLKVGVIGTTQNITQRIEYVPDDEKNSTLLDFLE 625

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            L++ +    I            + + +               IHG +S  ++ES ++SF
Sbjct: 626 TLTKSQALTLIFV--------ETKRLCDSLTVFLNSRGYPTTCIHGDLSQYERESALNSF 677

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G    L+AT V   G+ + +   +I  +  +     +H++ GR GR  +  + I  ++
Sbjct: 678 RSGNTPFLVATDVASRGLHIPNVMHVINYDLPNDVHVYVHRI-GRTGRAGKKGNAISFFN 736

Query: 598 PPLSKNSYTRLSVLKNTE 615
                 +     ++K + 
Sbjct: 737 EKNKPIAQELFQLMKKSN 754


>gi|302853426|ref|XP_002958228.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
           nagariensis]
 gi|300256416|gb|EFJ40682.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
           nagariensis]
          Length = 574

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 80/397 (20%), Positives = 147/397 (37%), Gaps = 47/397 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----------A 320
            P+  Q +AI   LQ      +   I   + GSGKT   ++ M + +             
Sbjct: 177 KPSPIQMAAIPLGLQ------QRDVIGIAETGSGKTAAFVLPMLSYIMRQPPMTEENEAD 230

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  AV++AP   LAQQ  E   K    T   +  + G      +   L +       I+I
Sbjct: 231 GPYAVVLAPTRELAQQIEEETHKLAYYTNYRIASVVGGQSIEEQGAKLRKGCE----IVI 286

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVL-------- 424
            T     D I  +         ++L   D     G + ++     A     L        
Sbjct: 287 ATPGRLLDCIDRHYAVLNQCNYVVLDEADRMIDLGFEPQVIGVLDAMPSSFLKPDEDGAV 346

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           L        T + ++     + ++ +K   R+P+  VI    ++ + + +   V+ E +K
Sbjct: 347 LEANRTYRTTYMFSATMPPAVERLAKKYL-RRPVVVVIGSAGKVTDNVTQRVFVVKENEK 405

Query: 485 AYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
              +  ++E   E       N +   +  +   E       I+HG  +   +E+ +  F+
Sbjct: 406 PRVLEQEMESVDEKRVIVFVNTQRQCDNVHRHLEELGYRCTILHGGKTQDQREAGIKGFR 465

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT   LIAT V   GIDV D +++I  +  +      H++ GR GR  +    +     
Sbjct: 466 DGTYNCLIATDVAGRGIDVPDVALVINYDMPNNIENYTHRI-GRTGRAGKKGVAVTFLTL 524

Query: 599 PLSKNSYTRLSVLKNTEDGF--LIAEEDLKQRKEGEI 633
             +   Y    +L+ ++      +A  +  + K G I
Sbjct: 525 GDTGVFYDLKKLLEESKAAVPPELARHEASKLKPGSI 561


>gi|229136279|ref|ZP_04265026.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST196]
 gi|228647151|gb|EEL03239.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST196]
          Length = 481

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 139/371 (37%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L L  +        DE    G   Q   +  +     + ++ +  +P
Sbjct: 129 TPGRVLDHIEKGTLSLDCLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTMLFSATLP 188

Query: 433 RTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           + +   S   +D     +I         I+  +  +   +++     V   E   +  I 
Sbjct: 189 KDVEKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMREEEKLSLLKDVTTIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  F+          +        IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVFQQ--------LKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNNGKAITFMTPYENRFLEEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|30023480|ref|NP_835111.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|229130700|ref|ZP_04259653.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-Cer4]
 gi|29899041|gb|AAP12312.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|228652717|gb|EEL08602.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-Cer4]
          Length = 481

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 138/371 (37%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYDHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+   L L  +        DE    G   ++   + +  T    +L +AT  
Sbjct: 129 TPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +I         I+  +  +   +++     V   E   +  I 
Sbjct: 189 EDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  +R          +        IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVYRQ--------LKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|115474897|ref|NP_001061045.1| Os08g0159900 [Oryza sativa Japonica Group]
 gi|75328149|sp|Q84UQ1|RH42_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 42
 gi|29467560|dbj|BAC66730.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|37806159|dbj|BAC99664.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113623014|dbj|BAF22959.1| Os08g0159900 [Oryza sativa Japonica Group]
 gi|218200507|gb|EEC82934.1| hypothetical protein OsI_27901 [Oryza sativa Indica Group]
 gi|222639953|gb|EEE68085.1| hypothetical protein OsJ_26125 [Oryza sativa Japonica Group]
          Length = 1049

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 166/435 (38%), Gaps = 54/435 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           ++ + F  P   Q  A+  I+           I     GSGKTL  ++ M   V+     
Sbjct: 439 IKKLGFEKPMSIQAQALPIIMSGRD------CIGIAKTGSGKTLAFVLPMLRHVKDQPAV 492

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G   +IMAP   L  Q +  IKK+++   I    I G    A +   L+R     A
Sbjct: 493 VPGDGPIGLIMAPTRELVVQIHSDIKKFSKALGINCVAIYGGSGVAQQISELKR----GA 548

Query: 377 HIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            I++ T     D +           ++  +++DE  R                  ++   
Sbjct: 549 EIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQIT------RIVQNT 602

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  +T++ ++     +  +  K    KP++  +   + +++ I +L  V  E ++ + +
Sbjct: 603 RPDRQTVLFSATFPRQVEILARKVLT-KPVEIQVGGRSVVNKDITQLVEVRPENERFFRL 661

Query: 489 CPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGT 541
              + E  +      F    ++ +SL +           +HG     D+ES +  FK+  
Sbjct: 662 LELLGEWFDKGKILVFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQTDRESTLADFKSNV 721

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           C LLIAT+V   G+DV +  +++  +  +     +H++ GR GR       +        
Sbjct: 722 CSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRV-GRTGRAGRKGFAVTFISEEEE 780

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI-LGIKQS-----GMPKFLIAQPELHDSL 655
           + +   +  L+ +E       + L  R   ++  G +Q+     G   F   + E     
Sbjct: 781 RYAPDLVKALELSEQAVPEDLKGLADRFMAKVKQGTEQAHGTGYGGSGFKFNEEE----- 835

Query: 656 LEIARKDAKHILTQD 670
            + ARK AK    ++
Sbjct: 836 -DEARKSAKKAQARE 849


>gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
 gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
          Length = 509

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 70/342 (20%), Positives = 128/342 (37%), Gaps = 24/342 (7%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GG 322
           +  + F   T  Q   I   L+            Q   G+GKT    + +   V    G 
Sbjct: 16  IEEMGFEEATPIQAQTIPMALEGKDV------FGQAQTGTGKTAAFGLPLLEKVHETGGV 69

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+ P   LA Q  E + +  +   I    + G     H+ K L++       ++IGT
Sbjct: 70  QALIIEPTRELAVQTGEELYRLGKFKGIHTTTVYGGASIGHQIKLLKK----NPPVVIGT 125

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D I+   L L  V+        + LK+        ++    T   +TL+ ++   
Sbjct: 126 PGRILDLIKRGVLKLNNVETLVLDEADEMLKMGFVEDIESIIRELPT-ERQTLLFSATVP 184

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK------- 495
            +I +I +      P    +       ++I++      + +K   +   I+ +       
Sbjct: 185 QEIKRIADNFMN-DPATVHVKTKQMTADLIDQYYSRCKDYEKFDLLTRFIDVQNPELSIV 243

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                R V E    L E   S+  I HG +S   +  V+ +FKNG   +L+AT V   G+
Sbjct: 244 FARTKRRVDEVARGLVERGYSAEGI-HGDLSQDKRLGVLRNFKNGKLDILVATDVAARGL 302

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           D+   + +   +      + +H++ GR GR  +    +    
Sbjct: 303 DISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKEGMSVTFVT 343


>gi|229112867|ref|ZP_04242398.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock1-15]
 gi|296505875|ref|YP_003667575.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|228670546|gb|EEL25859.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock1-15]
 gi|296326927|gb|ADH09855.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 481

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 138/371 (37%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYDHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+   L L  +        DE    G   ++   + +  T    +L +AT  
Sbjct: 129 TPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +I         I+  +  +   +++     V   E   +  I 
Sbjct: 189 EDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  +R          +        IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVYRQ--------LKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|206970279|ref|ZP_03231232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206734856|gb|EDZ52025.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
          Length = 481

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 78/363 (21%), Positives = 135/363 (37%), Gaps = 39/363 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           PT+ Q   I   L+      +   +++   GSGKT    I +   VE      QA+++ P
Sbjct: 27  PTEVQGEVIPVALE------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTP 80

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I    +  +I    + G  P A ++  L++    + HI++GT     D 
Sbjct: 81  TRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVGTPGRVLDH 136

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTLVL 437
           I+   L L  +        DE    G   ++   + +  T    +L +AT       L  
Sbjct: 137 IEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDVEKLSR 196

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           T +      +I         I+  +  +   +++     V   E   +  I  + +E  +
Sbjct: 197 TYMNSPIHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRTQENVD 256

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             +R          +        IHG M   D+  VMD F+ G  + L+AT V   GID+
Sbjct: 257 HVYRQ--------LKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDI 308

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            + + +I  +      + +H+  GR GR       I    P  ++        +     G
Sbjct: 309 DNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENRFLEEIEEYI-----G 362

Query: 618 FLI 620
           F I
Sbjct: 363 FEI 365


>gi|15894071|ref|NP_347420.1| ATP-dependent RNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15023670|gb|AAK78760.1|AE007593_8 ATP-dependent RNA helicase, superfamily II [Clostridium
           acetobutylicum ATCC 824]
 gi|325508198|gb|ADZ19834.1| ATP-dependent RNA helicase, superfamily II [Clostridium
           acetobutylicum EA 2018]
          Length = 374

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 128/369 (34%), Gaps = 39/369 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT  Q  +I  I            I +   G+GKTL  L+ +   +    +  QA+I+ 
Sbjct: 23  EPTPVQAESISHIKGGRDV------IGEAQTGTGKTLAFLLPIFENISPTLSAVQALIVT 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  +   I +    G    A ++K L     G  H+II T     D
Sbjct: 77  PTRELALQITEQALKLKEAKDINILAAYGGKDIASQQKKLR----GSTHLIIATPGRLLD 132

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQR--LKLTQKATAPHVLLMTAT--PIPRTLV 436
            IQ   +        +L   D+    G +      L        +L  +AT  P  + L 
Sbjct: 133 LIQRKTVDLRKLKSFVLDEADQMLLMGFKNDVEEILKNAPKKRQMLCFSATISPAVKKLA 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              + +       +K    + I+  ++      ++ +    +  +      I  +     
Sbjct: 193 YRYMTNPLTISTKKKEVTLENIEQFVVETTDRKKLEDLCTALKQDNPFMAIIFGRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+               +H  ++   +E +M SF+NG  + L+AT V   G+D
Sbjct: 249 ----KRRVDELEVELYRRGFDCQKLHSDLTQTKRERIMKSFRNGDFQYLLATDVASRGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   S I   +      + +H++ GR GR  E     L       +      + +K    
Sbjct: 305 ISGVSHIYNYDVPDNPESYIHRI-GRTGRAGEEGYTCLFAAERDKRKLEDIEAAIK---- 359

Query: 617 GFLIAEEDL 625
            F I   DL
Sbjct: 360 -FKIPRRDL 367


>gi|212636318|ref|YP_002312843.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212557802|gb|ACJ30256.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 446

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 74/346 (21%), Positives = 126/346 (36%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           SPT  Q  +I  IL           I     G+GKT   ++ +   +           +A
Sbjct: 23  SPTPIQAKSIPVILSGR------NLIAAAQTGTGKTASFVLPILQLLSQSQTQRKKRIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q    I  Y ++  +    + G +    +R+ L         I++ T  
Sbjct: 77  LILTPTRELAVQVEANIALYGKHLALTSMAMYGGVDAKPQRQRLLD----GVDILVATPG 132

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I + +L ++++DE  R      ++   K       +M   P  R  +L S
Sbjct: 133 RLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDIDK-------IMDKLPADRQSLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                  K   K A  KP++  +I        IE+    + + KK+  +   I+E     
Sbjct: 186 ATLSHQVKALAKTAIDKPVEISVIANTDSKPKIEQWLTTVDKDKKSALLSHLIKENSWHQ 245

Query: 500 FRSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               +E       L             IHG  S   +E ++  FK G   LLIAT V   
Sbjct: 246 ALIFIETKQGAAKLVSQLEKRGINAECIHGGRSQEVREKILADFKAGEIGLLIATGVAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+ +  ++I  +  +     +H++ GR GR       + L    
Sbjct: 306 GLDIDELPLVINYDLPYPADDYIHRI-GRTGRAGANGEAVSLVSKD 350


>gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
 gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
          Length = 719

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 138/371 (37%), Gaps = 42/371 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA------- 317
           L  + +  P+  QE  I  +L      N ++ + Q   G+GKT    +   +        
Sbjct: 143 LEEVGYEKPSPIQEQTIPPLLDG----NDVVGLAQ--TGTGKTAAFALPALSRMAELADI 196

Query: 318 --VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHG 374
             V    Q +++AP   LA Q  E    Y  + +   V  I G  P   +   L R    
Sbjct: 197 NGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRR---- 252

Query: 375 QAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP--HVL 424
            A +++GT     D ++   L        +L   DE  R G  + ++   + T     V 
Sbjct: 253 GAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAKQVA 312

Query: 425 LMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT     R +    L D    ++  K      I+   + +    ++    +V+  E 
Sbjct: 313 LFSATMPNSIRKIAQQYLNDPTEVRVKTKTTTGANIRQRYMQVMHSHKLDAMTRVLEVEN 372

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                +  + +++ E       E  + L      + AI +G +    +E  +D+ ++G  
Sbjct: 373 YDGIIVFVRTKKETE-------EVADKLKARGFQAAAI-NGDIPQQLRERTVDALRDGRI 424

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+DV   S+++  +  H   + +H++ GR GR       IL   P    
Sbjct: 425 DILVATDVAARGLDVERISLVVNYDIPHDTESYVHRI-GRTGRAGRDGEAILFVTPREKY 483

Query: 603 NSYTRLSVLKN 613
                    + 
Sbjct: 484 MLRQIEKATRQ 494


>gi|259146813|emb|CAY80069.1| Rrp3p [Saccharomyces cerevisiae EC1118]
          Length = 501

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 132/348 (37%), Gaps = 33/348 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
            +N+ +S PT  Q  AI   L+          I     GSGKT    I +   +   +  
Sbjct: 96  CKNLNYSKPTPIQSKAIPPALEGHD------IIGLAQTGSGKTAAFAIPILNRLWHDQEP 149

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A I+AP   LAQQ  E          +    I G M    + + L R    + HIII 
Sbjct: 150 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR----KPHIIIA 205

Query: 382 THALFQDSIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           T     D ++        KL  +++DE  R      L +        +L +  T    T 
Sbjct: 206 TPGRLMDHLENTKGFSLRKLKFLVMDEADRL-----LDMEFGPVLDRILKIIPTQERTTY 260

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I K+ ++ +   P+K  +    +  + + +  +V+  G K  ++   + E 
Sbjct: 261 LFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEF 319

Query: 496 KESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      ++  ER + L      S   +HG ++   +   +D FK G   +L+AT 
Sbjct: 320 IGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATD 379

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   G+D+    I++  +      + +H++ GR  R       I L  
Sbjct: 380 VAARGLDIPSVDIVVNYDIPVDSKSYIHRV-GRTARAGRSGKSISLVS 426


>gi|256083681|ref|XP_002578069.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238663419|emb|CAZ34307.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 944

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 131/371 (35%), Gaps = 42/371 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----------- 321
           PT  Q+ A+  I        +   +     GSGKT   L+ +   +              
Sbjct: 182 PTPVQKYALPIIAA------KRDLMACAQTGSGKTAAFLLPILNMLFEDNHCENSDASAL 235

Query: 322 -----GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                  A+I+AP   L+ Q Y+  +K++  + I   ++ G      + + L        
Sbjct: 236 SCAVCPLALILAPTRELSSQIYDEARKFSYRSNIKPCVVYGGASILAQIREL----SHGC 291

Query: 377 HIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           ++++ T     D +   K+ L  +     DE  R          ++    H   M     
Sbjct: 292 NLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADRMLDMGFEPQIRRIVEQH--GMPPAGK 349

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            +TL+ ++    +I  +  +      I   +  +   +E I +  + +++  K   +   
Sbjct: 350 RQTLMFSATFPKEIQTLA-RDFLHSYIFLAVGRVGSTNENIIQEVLNVADKDKPDMLVRL 408

Query: 492 IEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           ++ K            +   +            +  IHG     ++E  + SF++G   +
Sbjct: 409 LQGKDPDGLALVFVETKRGADVLAKFLCQLNFPVTSIHGDRPQTEREHALQSFRSGRTPI 468

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+D+ +   +I  +        +H++ GR GR  +  S    +        
Sbjct: 469 LIATAVAARGLDIPNVKHVINFDLPSDIEEYVHRI-GRTGRMGQPGSATSFFSEKNQNVV 527

Query: 605 YTRLSVLKNTE 615
              + +L+ ++
Sbjct: 528 RDLVELLRESK 538


>gi|261345155|ref|ZP_05972799.1| ATP-dependent RNA helicase DeaD [Providencia rustigianii DSM 4541]
 gi|282566845|gb|EFB72380.1| ATP-dependent RNA helicase DeaD [Providencia rustigianii DSM 4541]
          Length = 660

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 92/446 (20%), Positives = 172/446 (38%), Gaps = 64/446 (14%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q+  I  +L           +     GSGKT    + +   ++     
Sbjct: 22  LSDLGYEKPSPIQQQCIPLLLNG------NDVLGMAQTGSGKTAAFGLPLLHNIDPDLKA 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++  ++ V  + G      R     R       +++
Sbjct: 76  PQILVLAPTRELAVQVAEALSDFSKHMNRVNVVALYGG----QRYDVQLRALRQGPQVVV 131

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++           L+L   DE  R G    +   ++Q        L +AT 
Sbjct: 132 GTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIDDVENIMSQIPAQHQTALFSATM 191

Query: 430 --PIPRTLVLTSLGDIDI---SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             PI R          +I   S IT +P   +   TV     R +E +  ++ + SE   
Sbjct: 192 PEPIRRITRRFMKDPKEIRIQSSITTRPDIAQSYWTV--SGMRKNEAL--VRFLESEDFD 247

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     +S A+ +G M+   +E  ++  KNG   +
Sbjct: 248 AAIIFVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKNGRLDI 299

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 300 LIATDVAARGLDVERISLVVNYDIPMDAESYVHRI-GRTGRAGRAGRALLFVENRERRLL 358

Query: 605 YTRLSVLKNTEDGFLIAEED------LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
                 +K T     I E D      L QR++ +     Q    +   +  +L+ SLL  
Sbjct: 359 RNVERTMKLT-----IPEVDLPNAELLSQRRQAQFAAKVQ---QQLESSDLDLYRSLL-- 408

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRIL 684
               AK   ++D D+ ++    +++ 
Sbjct: 409 ----AKVSPSEDVDMETLAAALLKMA 430


>gi|218233461|ref|YP_002370229.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|229153612|ref|ZP_04281789.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1550]
 gi|218161418|gb|ACK61410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228629841|gb|EEK86493.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1550]
          Length = 481

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 138/371 (37%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYDHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+   L L  +        DE    G   ++   + +  T    +L +AT  
Sbjct: 129 TPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +I         I+  +  +   +++     V   E   +  I 
Sbjct: 189 EDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  +R          +        IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVYRQ--------LKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|146278024|ref|YP_001168183.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145556265|gb|ABP70878.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 507

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 76/390 (19%), Positives = 144/390 (36%), Gaps = 54/390 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+          +     G+GKT    + M   +  G       +++
Sbjct: 24  TPTPIQAQAIPHALEGKDV------LGIAQTGTGKTASFTLPMITILGKGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y +++++   ++ G +    + K ++R       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDR----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     ++VDE  R      +   ++       + + TP   +TL  ++
Sbjct: 134 LLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIER-------IFSLTPFTRQTLFYSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL-------KVVLSEGKKAYWICPQI 492
               +I +IT        +K  +       E IE+        +   S   K   +   I
Sbjct: 187 TMAPEIERITNTFLTG-AVKIEVARQATTSETIEQKLIQITPTRKERSFADKRAVLRALI 245

Query: 493 EEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             + E         N +  V+      +    + + IHG +    +   +D F++GT  L
Sbjct: 246 RAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLDQSQRTKTLDGFRDGTLHL 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+A+ V   G+D+   S +   +        +H++ GR GR         +  P   K  
Sbjct: 306 LVASDVAARGLDIPAVSHVFNFDLPTHPEDYVHRI-GRTGRAGRKGKAFSIAVPSDEKYL 364

Query: 605 YTRLSVLK------NTEDGFLIAEEDLKQR 628
               S++K         +GF +  ED   R
Sbjct: 365 AAIESLVKQAIPRGELPEGFSL--EDRPDR 392


>gi|168034811|ref|XP_001769905.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|168034871|ref|XP_001769935.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678811|gb|EDQ65265.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678841|gb|EDQ65295.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 582

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 142/423 (33%), Gaps = 48/423 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q  A+   L           +   + GSGKT    + M     A        G  
Sbjct: 157 TPTPIQAQALPVALSGRD------LLGCAETGSGKTAAFSLPMIQHCLAQPPIRRGDGPL 210

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           A+++AP   LAQQ  + +K + ++       I+ G      +R  L         I++ T
Sbjct: 211 ALVLAPTRELAQQIEKEVKAFCRSAEGFRTAIVVGGTNIYEQRSELRA----GVEIVVAT 266

Query: 383 HALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP 432
              F D +Q           ++L   D     G   Q R  +         LL +AT   
Sbjct: 267 PGRFIDHLQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLPKKHQTLLFSATMPE 326

Query: 433 RT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY-WIC 489
               L    L +    K+    +    +   +  I   +++   L +++ E  ++     
Sbjct: 327 EIEALAQEYLDNPIRVKVGRVSSPTANVTQNLEKITEKEKIESLLALLVDEHSQSLDTNQ 386

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           P          ++  +               +HG  S  ++E+ +  F+ GT  +L+AT 
Sbjct: 387 PPPLTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFRKGTTNILVATD 446

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV   + +I  +        +H++ GR GR          Y             
Sbjct: 447 VASRGLDVTGVAHVINLDLPKTMEDYVHRI-GRTGRAGASGRATSFYTERDMFLVAQIRR 505

Query: 610 VLKNTEDGFLIA-----EEDLKQR------KEGEI--LGIKQSGMPKFLIAQPELHDSLL 656
            +   E G  +A         K+R      +EG +  LG+ Q G     +     H  +L
Sbjct: 506 AITEAESGNAMAFATGKAARRKEREQAAAFREGRVAPLGVAQIGATTVRVDDKYKH--ML 563

Query: 657 EIA 659
             A
Sbjct: 564 SAA 566


>gi|15611302|ref|NP_222953.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori J99]
 gi|4154758|gb|AAD05818.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99]
          Length = 491

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 130/345 (37%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
           SP+  QE AI  +LQ          I Q   G+GKT    + +   ++     +A+++ P
Sbjct: 42  SPSPIQEKAIPAVLQGRDV------IAQAQTGTGKTAAFALPIINNLKNNHTIKALVITP 95

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I K  ++T+     + G      +             ++I T     D 
Sbjct: 96  TRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQ----CEFIKKNPQVMIATPGRLLDH 151

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++  +        ++L   DE    G             +   +LL +AT          
Sbjct: 152 LKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSAT---------- 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---K 496
                I ++ +K     PIK  I P N  +  I +   V++E ++A  I   ++ +   K
Sbjct: 202 -MPEPIKRLADK-ILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPEK 259

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F    +  + LH+           +HG M   D+ S + +FK     +L+AT V   
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+D+   S +   +      + +H++ GR GR  +    I L  P
Sbjct: 320 GLDISGVSHVFSYHLPLNTESYIHRI-GRTGRAGKKGMAITLVTP 363


>gi|330447635|ref|ZP_08311283.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491826|dbj|GAA05780.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 461

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 82/451 (18%), Positives = 166/451 (36%), Gaps = 64/451 (14%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q  ++  IL+          I QG  GSGKT    + +   +       Q +++ P 
Sbjct: 28  TPIQAQSLPLILEGKDV------IAQGKTGSGKTAAFGLGLLQNLRVKRFRVQTLVLCPT 81

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + I++  +    I V  + G MP   +  +LE      AHII+GT    ++ 
Sbjct: 82  RELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEH----GAHIIVGTPGRVEEH 137

Query: 390 I--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           I        +   L+L   D     G Q  L           ++  A    +TL+ ++  
Sbjct: 138 IRKGFLCLDELNTLVLDEADRMLEMGFQDSL---------DAIIEGAPRDRQTLLFSATY 188

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---- 497
              I+ I ++   R P++  +   +    + +    V +  ++   +   + + +     
Sbjct: 189 PDQIASIAKR-IMRNPVQVKVESNHDNSSISQHFYKVDNNEERMRAVRLLLSQHRPESCV 247

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +   +  +   E +  S   +HG +   +++  +  F N +  +L+AT V   G+
Sbjct: 248 VFCNTKREAQEISDDLEAYGFSAIALHGDLEQRERDRTLVLFANKSRSILVATDVAARGL 307

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+ +   +I  +        +H++ GR GR         L+              L    
Sbjct: 308 DIDNLDAVINYHLARDTEVHVHRI-GRTGRAGSKGIACSLFSDKEHYKVALLEDYLDRPI 366

Query: 616 DG-------------FLIAEEDLKQRK-------EGEILG--IKQSGMPKFLIAQPELHD 653
           +G             F  A   L            G+ILG    ++G+    + +  + D
Sbjct: 367 EGEMLPPDHLLDQPTFRPAMITLMIDGGKKQKVRPGDILGALTGENGIAGSDVGKINVFD 426

Query: 654 --SLLEIARKDAKHILTQDPDLTSVRGQSIR 682
             + + + R+ A+  L +  +   ++G++ R
Sbjct: 427 FCAYVAVKREVARAALKKLEN-GRIKGRNFR 456


>gi|229014620|ref|ZP_04171734.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides DSM 2048]
 gi|228746631|gb|EEL96520.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides DSM 2048]
          Length = 464

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 140/371 (37%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      R   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYEHPTEVQGEVIPVALQ------RKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L L  +        DE    G   Q   +  +     + ++ +  +P
Sbjct: 129 TPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTMLFSATLP 188

Query: 433 RTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           + +   S   +D     +I         I+ ++  +   +++     V   E   +  I 
Sbjct: 189 KDVEKLSRTYMDSPTHIEIKATGITTDKIEHILFEMREEEKLSLLKDVTTIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  F+          +        IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVFQQ--------LKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNNGKAITFMTPYENRFLEEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|229148341|ref|ZP_04276624.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST24]
 gi|228635135|gb|EEK91682.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST24]
          Length = 481

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 138/371 (37%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYDHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+   L L  +        DE    G   ++   + +  T    +L +AT  
Sbjct: 129 TPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +I         I+  +  +   +++     V   E   +  I 
Sbjct: 189 EDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  +R          +        IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVYRQ--------LKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|221133986|ref|ZP_03560291.1| ATP-dependent RNA helicase [Glaciecola sp. HTCC2999]
          Length = 622

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 77/382 (20%), Positives = 149/382 (39%), Gaps = 35/382 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N+  +I Q + +    +P+  Q  +I  +L+          + Q   G+GKT    + M
Sbjct: 12  LNLPSEILQALEKVGYETPSPIQAESIPLLLEGHD------LLGQAQTGTGKTAAFALPM 65

Query: 315 AAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALER 370
            A +   E+  Q +++AP   LA Q  E  + Y   ++ I V  I G     ++ + L+R
Sbjct: 66  LANIDVEESFPQLLVLAPTRELAIQVAEAFQVYASFSKKIRVLPIYGGQSYDNQIRQLKR 125

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATA 420
                  +++GT     D IQ   L        +L   DE  R G    ++L        
Sbjct: 126 ----GVQVVVGTPGRVIDHIQRKTLKLDRLKFLVLDEADEMLRMGFIDDVELILSHSPKE 181

Query: 421 PHVLLMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               L +AT P P + +    L +    KI  K +    I+     +    ++    +++
Sbjct: 182 KQTALFSATMPGPIKKITERYLHEPKHVKIASKVSTASTIRQRYCQVAGHHKLEALTRIL 241

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
             E      +  + +        + +E  + L       +  ++G +    +E  ++  K
Sbjct: 242 EVEQFDGVIVFVRTKT-------ATLELADKLSARGYD-VEPLNGDIPQKSRERTVERLK 293

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G+  +LIAT V+  G+DV   S +I  +  +   + +H++ GR GR       IL    
Sbjct: 294 SGSIDILIATDVVARGLDVERVSHVINFDIPYDTESYVHRI-GRTGRAGRQGDAILFISH 352

Query: 599 PLSKNSYTRLSVLKNTEDGFLI 620
              +  +      K + +   I
Sbjct: 353 REKRLLFQIEKTTKQSIEQMPI 374


>gi|42521860|ref|NP_967240.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574390|emb|CAE77894.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 505

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 145/363 (39%), Gaps = 41/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--------GQ 323
           +PT  Q +AI  IL+     + +L I Q   G+GKT    + +   +            +
Sbjct: 26  TPTPIQLAAIPVILEG----HDLLGIAQ--TGTGKTAAFSLPILQNLSKHTRKIEPKSPR 79

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   LA Q +E I+ Y+++  +   +I G + Q  + +AL+    G   I+I T 
Sbjct: 80  CLILTPTRELAIQIHENIEAYSKHLNMKHAVIFGGVGQNPQVRALQ----GGVDILIATP 135

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D      ++  ++ + ++DE  R      ++  +K      +L         L  +
Sbjct: 136 GRLMDLHGQKHLKLDRVEIFVLDEADRMLDMGFMQDIKK------ILPLLPQKRHNLFFS 189

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-- 496
           +    +I  +  +     P K  + P++   E +E+  + + + +K   +   ++++   
Sbjct: 190 ATMPHEIQTLANR-ILVNPKKVEVTPVSSTAEKVEQRVMFVDKPQKLDLLLHILKDESLS 248

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +    R          + A IHG  S   ++  ++ FKNG  ++L+AT +  
Sbjct: 249 KVLVFVQMKYGANRVVDRLTKAGVAAAGIHGDKSQNQRQRALEEFKNGDVRVLVATDIAA 308

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+   + +I     H   + +H++ GR  R       I       +    + L  ++
Sbjct: 309 RGIDIDGITHVINLELPHIPESYVHRI-GRTARAGATGISISFC----TAEERSFLFAIE 363

Query: 613 NTE 615
            T 
Sbjct: 364 KTT 366


>gi|71065641|ref|YP_264368.1| ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter arcticus
           273-4]
 gi|71038626|gb|AAZ18934.1| possible ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter
           arcticus 273-4]
          Length = 567

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 134/354 (37%), Gaps = 26/354 (7%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVI 326
           PT  Q  AI   LQ          +L    GSGKT   +I +   +          +A+I
Sbjct: 67  PTPIQAEAIPFALQGRD------LLLSAQTGSGKTAAFVIPVLDRLSRATSFDKLTKALI 120

Query: 327 MAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           + P   LAQQ ++ ++ Y+++   +    + G  P   +  AL++       +I+ T   
Sbjct: 121 LTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQITALKK----GVQVIVATPGR 176

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D I   ++ L  + E        R+     A     +L  A    +T++ ++  D  +
Sbjct: 177 LLDHINAGRVDLSSL-EILVLDEADRMLDMGFADDISDILRAAPIDRQTIMCSATWDGPV 235

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---RS 502
            KI           ++ +    I+E +        + +    I    + ++   F   + 
Sbjct: 236 GKIAASFTKNPERVSIKVESAHIEEKVYYCDDFDHKNRLLDKIVCHKDMEQIIIFAATKR 295

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             E+     +      + +HG +    +  ++   +NG CK+L+AT V   G+DV   S 
Sbjct: 296 STEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKILVATDVAARGLDVPALSH 355

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +I  +        +H++ GR GR       I L     S +   +L+ +    D
Sbjct: 356 VINYDLPRQTEDYVHRI-GRCGRAGRTGVAISLC----SMDDRPQLNAINRYLD 404


>gi|42521938|ref|NP_967318.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574468|emb|CAE77972.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 473

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 126/348 (36%), Gaps = 19/348 (5%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA--VIMAP 329
            PT  Q  AI   L           I     GSGKTL   +++   ++   +A  +I+ P
Sbjct: 55  KPTPVQSQAIPASLDG------SDIIAIAQTGSGKTLAFALSLLTTLQKKPEARGLILVP 108

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              +AQQ Y+   +      + V +  G    + +   L++       +II T     D 
Sbjct: 109 SREMAQQIYKVFLELCAEMPVSVCLAIGGTTGSKQANQLKK----NPRLIIATPGRMNDH 164

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +   KL+L  V E        R+     A     +  T     +T++ ++    ++  I 
Sbjct: 165 LSGNKLLLQNV-EVIVLDEADRMLDMGFAPQLRTIQSTLRGPRQTMMFSASFGSNVESIA 223

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----ESNFRSVV 504
           +       +           E +++  + L    K   +  ++   +      +  +   
Sbjct: 224 QLFMKPDVVMVRSEKAEAPVESLKQKVLFLDRSMKNDRLLDELNATRGGVIVFTGNQENC 283

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           E   +  + +  S  +IHG +S   +  V+  F+ G  ++++AT ++  G+DV     ++
Sbjct: 284 EAVGNYLKEYGFSTDLIHGGLSQGQRNRVVRGFREGEIRIVVATDLLARGLDVPHVDHVV 343

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             +        LH++ GR  R       I    P  ++        L+
Sbjct: 344 NFDLPFQSEDFLHRI-GRTARAGRGGEAITFVTPSDTRMYAKIKGYLQ 390


>gi|253771020|gb|ACT35658.1| PL10-like protein [Haliotis asinina]
          Length = 775

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 64/383 (16%), Positives = 134/383 (34%), Gaps = 56/383 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ +I  +L       R   +     GSGKT   L+ +   +   G         
Sbjct: 321 KPTPVQKYSIPIVL------GRRDLMACAQTGSGKTAAFLVPILNQIYDKGPGQVPQQQR 374

Query: 324 -----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                      A+++AP   LA Q Y+  +K+   +++   ++ G      + + L+R  
Sbjct: 375 QYGKRTKQYPIALVLAPTRELASQIYDEARKFAYRSRVRPCVVYGGADIGAQMRDLDR-- 432

Query: 373 HGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
               H+++ T     D ++  K        L+L   D     G + +++L  +     V 
Sbjct: 433 --GCHMLVATPGRLVDMVERGKIGLEYCKFLVLDEADRMLDMGFEPQIRLIVEKNGMPV- 489

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
               +   +TL+ ++    +I  +  +      +   +  +    E I +  V + E +K
Sbjct: 490 ----SGERQTLMFSATFPKEIQILA-RDFLENYVFLAVGRVGSTSENITQKVVWVEENEK 544

Query: 485 AYWICPQIEEKKES------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
             ++   I                    +   +      +        IHG  S  ++E 
Sbjct: 545 RSFLLDLINASGMFSSGPESLTLTFLETKKGADALEEFLQKEGYPATSIHGDRSQRERED 604

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            +  F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +   
Sbjct: 605 ALKVFRSGDRPILVATAVAARGLDIPNVRHVINFDLPSDIEEYVHRI-GRTGRVGNLGLA 663

Query: 593 ILLYHPPLSKNSYTRLSVLKNTE 615
              ++          L +L    
Sbjct: 664 TSFFNEKNKNIIRDLLDLLVEAN 686


>gi|229170156|ref|ZP_04297843.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH621]
 gi|228613301|gb|EEK70439.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH621]
          Length = 481

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 138/371 (37%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L L  +        DE    G   Q   +  +     + ++ +  +P
Sbjct: 129 TPGRVLDHIEKGTLSLACLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLP 188

Query: 433 RTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
             +   S   +D     +I         I+  +      +++     V  +E   +  I 
Sbjct: 189 EDVEKLSRKYMDSPTHIEIKAAGITTDKIEHTLFETREEEKLSLLKDVTTTENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  F+          +        IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVFKQ--------LDRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNNGKAITFMTPYENRFLEEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|156976669|ref|YP_001447575.1| ATP-dependent RNA helicase [Vibrio harveyi ATCC BAA-1116]
 gi|156528263|gb|ABU73348.1| hypothetical protein VIBHAR_05443 [Vibrio harveyi ATCC BAA-1116]
          Length = 430

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 144/371 (38%), Gaps = 27/371 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
             T  Q+ AI      M++K   +       G+GKT    + M   +   G+        
Sbjct: 23  KLTPIQQKAIP-----MARKGHDIF-ATAQTGTGKTAAFSLPMIQQLLESGRSASRKTAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+IMAP   LA+Q  + IK YT+ T + V  I G    + +  ALE    G   I++ T 
Sbjct: 77  ALIMAPTRELAEQIADNIKAYTKYTDLSVAAIFGGRKMSSQVTALE----GGVDILVATP 132

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
              ++ I+   + +  + E   F    R+       A   ++M     P+ ++ ++    
Sbjct: 133 GRLEEHIEQGNVSVASI-EFLVFDEADRILDMGFIHAVRKIMMDVDTDPQIMMFSATTSS 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---F 500
            ++ +  K   RKP +  +   N   + I  +   + + +K   +   I  K       F
Sbjct: 192 QLNLLA-KDILRKPKRIEVERANTTAQTIAHVLYPVDQERKTELLSELIGRKNWKQVLVF 250

Query: 501 RSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +  E  N + +          + HG  +   +   ++ FK G  ++++AT V   G+D+
Sbjct: 251 VNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARVMVATDVAARGLDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            D   ++  +        +H++ GR GR  +    +   +           ++++     
Sbjct: 311 EDLPHVVNYDMPFLAEDYVHRI-GRTGRAGKQGHAVSFVNREEELTVVQVENLIQQRIRR 369

Query: 618 FLIAEEDLKQR 628
             +A  + KQR
Sbjct: 370 IELAGYEPKQR 380


>gi|75061689|sp|Q5R6D8|DDX46_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46
 gi|55731939|emb|CAH92678.1| hypothetical protein [Pongo abelii]
          Length = 1032

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 427

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 428 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 487

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 488 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 544 M------RIVDNVRPDRQTVMFSATFPRAMEALVRR-ILSKPIEVQVGGRSVVCSDVEQQ 596

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 597 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 715

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 716 KGYAYTFITEDQARYAGDIIKALE 739


>gi|15604513|ref|NP_221031.1| putative ATP-dependent RNA helicase RHLE (rhlE) [Rickettsia
           prowazekii str. Madrid E]
 gi|3861207|emb|CAA15107.1| PUTATIVE ATP-DEPENDENT RNA HELICASE RHLE (rhlE) [Rickettsia
           prowazekii]
 gi|292572297|gb|ADE30212.1| ATP-dependent RNA helicase RhlE [Rickettsia prowazekii Rp22]
          Length = 407

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 144/373 (38%), Gaps = 36/373 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQAVIMAPI 330
            PT+ Q+ +I   +           +     GSGKTL  L+ +  A ++    A+I+ P 
Sbjct: 21  EPTEIQKQSIPVAMSG------ADILASSQTGSGKTLAYLLPLIDAFIKNKTTALILVPT 74

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q +  + K T   ++   ++ G  P   +   L++       +IIGT     + +
Sbjct: 75  RELATQIHSTLNKVTTAYKMNSAVLIGGEPMFKQFMQLKK----NPKVIIGTPGRIIEHL 130

Query: 391 QYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               L        +L  +D     G++++L+   K               + L+ ++   
Sbjct: 131 NRRSLKIEHIGIIVLDEMDRMLDMGMKEQLEEINKFLPEK---------RQVLMFSATMP 181

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----E 497
             I  +++K     P++ ++   N+    I++  + +S  +K   +  Q+  +       
Sbjct: 182 KHIIAVSQKYLN-NPVRIMVGATNKAAAEIKQELMHVSNKEKFSELTKQLGNRVGSVIIF 240

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++   + ++       IHG +S   +E V+ SF+    ++++AT V   G+D+
Sbjct: 241 VKTKRSADQLAKMLKYENHKAEAIHGDLSQSQRERVILSFRKLNHRIMVATDVAARGLDI 300

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
                +I  +        LH++ GR GR   I   +    P           ++   E  
Sbjct: 301 PHTQHVINYDLPMCPEDYLHRI-GRTGRAGAIGHALSFISPDDVVRWRAIDRLVNKGEST 359

Query: 618 FLIAEE-DLKQRK 629
              A   D K+RK
Sbjct: 360 PRSAFRSDKKKRK 372


>gi|224124820|ref|XP_002319430.1| predicted protein [Populus trichocarpa]
 gi|222857806|gb|EEE95353.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 137/373 (36%), Gaps = 37/373 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q  A+   L           +   + GSGKT    I M     A        G  A
Sbjct: 138 PTSIQAQAMTVALSGRD------LLGCAETGSGKTAAFTIPMIQHCLAQPTVRRGDGPLA 191

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++AP   LAQQ  + +K ++++ +     I+ G    A +R  L         +I+ T 
Sbjct: 192 LVLAPTRELAQQIEKEVKGFSRSLESFRTAIVVGGTNIADQRLELRA----GVDVIVATP 247

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D +Q           ++L   D     G   Q R  +         LL +AT    
Sbjct: 248 GRLIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVE 307

Query: 434 -----TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
                   LTS   + + K++   A    I T +    +ID ++  L    S+ +++   
Sbjct: 308 IETLTQEYLTSPVQVRVGKVSSPTANVSQILTKVSESEKIDCLLALLVEDASQAERSNQP 367

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            P      E   R   E   +L      ++A+  GR S  D+E+ +  F++G+  +L+AT
Sbjct: 368 FPLTIVFVERKTR-CNEVAEALVAQALQAVALHGGR-SQSDREAALRDFRSGSTSILVAT 425

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   + +I  +        +H++ GR GR          Y            
Sbjct: 426 DVASRGLDVTGVAHVINLDLPKTMEDYVHRI-GRTGRAGSTGQATSFYTDQDLFLVAQIK 484

Query: 609 SVLKNTEDGFLIA 621
             + + E G  +A
Sbjct: 485 KAIADVESGNTVA 497


>gi|210623599|ref|ZP_03293925.1| hypothetical protein CLOHIR_01875 [Clostridium hiranonis DSM 13275]
 gi|210153469|gb|EEA84475.1| hypothetical protein CLOHIR_01875 [Clostridium hiranonis DSM 13275]
          Length = 371

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 76/358 (21%), Positives = 122/358 (34%), Gaps = 27/358 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMA 328
            PT  QE  I  I            I Q   G+GKTL  LI     +    +   A+I+ 
Sbjct: 23  KPTPVQEECIGIIKDGRDV------IAQSQTGTGKTLAFLIPTLEKINKNKKDVSALILT 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q     +K  +   + +    G      +   L     G  H++I T     D
Sbjct: 77  PTRELALQISNEAEKLAEPLGLNILSAYGGKDIKSQVNKL----KGNIHLVIATPGRLLD 132

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +    + L  +D        Q L L         +L       ++L  ++  D  + K+
Sbjct: 133 HLDRKTISLKNLDIFILDEADQML-LMGFKNEIDAILKETNKKRQSLFFSATMDSQVKKL 191

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE---EKKESNFRSVVE 505
             +     P    I       E I +  V  ++ +K   +C  ++         F     
Sbjct: 192 AYRYTN-DPAFIEIKSQEVTLEKINQSIVKTTDRRKFDSLCKVLDGDNPFMAIIFCRTKR 250

Query: 506 RFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           R + L E   S       IH  +S   +E +M +F+N   + LIAT V   G+D+   + 
Sbjct: 251 RADKLEEDMGSRGYNCEKIHSDISQAKRERIMKNFRNMKTQYLIATDVASRGLDITGVTH 310

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           I   +        +H++ GR GR  E            +K      + L     GF I
Sbjct: 311 IYNYDFPETAEDYIHRI-GRTGRAGENGDTCAFVTDKNTKILEDVENKL-----GFKI 362


>gi|220933289|ref|YP_002512188.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219994599|gb|ACL71201.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 602

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/358 (20%), Positives = 133/358 (37%), Gaps = 35/358 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  Q   I  +L           + Q   G+GKT    +   + ++      Q +++A
Sbjct: 31  APTPIQAEGIPPLLAGRD------LLGQAQTGTGKTAAFALPALSRLDLKDNRTQVLVLA 84

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  + Y ++     V  I G  P   + K L R     A +++GT     
Sbjct: 85  PTRELAIQVAEAFQTYARHLPGFHVLPIYGGQPYGIQLKQLSR----GAQVVVGTPGRVM 140

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP--RTL 435
           D ++           L+L   DE  R G    ++    Q   +  V L +AT     R +
Sbjct: 141 DHMRRGTLKLDALRTLVLDEADEMLRMGFIDDVEWILEQTPASRQVALFSATMPEVIRRV 200

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L +    +I         I+     ++ + ++    +++ +E   A  I  + +  
Sbjct: 201 AHTHLKEPAEVRIRSATTTATTIRQRYWRVSGLHKLDALTRLLETEPFDAMLIFVRTKT- 259

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                   VE    L     +    ++G +    +E V++  K G   +L+AT V+  G+
Sbjct: 260 ------ETVELAERLTARGHA-CEALNGDIPQNQRERVVERLKKGQLDILVATDVVARGL 312

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           DV   S ++  +  H   + +H++ GR GR       IL   P   +         + 
Sbjct: 313 DVERISHVLNYDIPHDTESYVHRI-GRTGRAGRTGEAILFVAPREQRMLKAIERATRQ 369


>gi|254506544|ref|ZP_05118685.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
 gi|219550417|gb|EED27401.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
          Length = 419

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 140/368 (38%), Gaps = 34/368 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------ 318
           L ++ F  PT+ Q  AI  +L+          +     G+GKT    + +   +      
Sbjct: 18  LSSLGFEQPTEVQTQAIPHVLEGKDV------LAGAQTGTGKTAAFGLPIIQKLIESEAK 71

Query: 319 ----EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                   +A+++ P   LAQQ ++ + +Y Q T++ +    G      + + LE+    
Sbjct: 72  RDPQSNDVRALVLVPTRELAQQVFDNLVQYAQATELKIVAAYGGTSMNVQTRNLEQ---- 127

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              I+I T     D +    + L+   E        R+           +L     + +T
Sbjct: 128 GCDILIATPGRLIDHMFCKNVSLLK-SEFLVLDEADRMLDMGFMPDIQRILKRFNAVRQT 186

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L  ++  D  I  I  K    +P++  +   N   E ++++   + + +KA  +   I  
Sbjct: 187 LFFSATFDKRIKNIAYK-LQSEPVEVQVSASNSTAETVKQMVYPVDKKRKAELLAYLIGS 245

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +           +   +      +      A I+G  S   ++  +D FK G  + LIAT
Sbjct: 246 RNWQQVLVFTKTKQGSDALVKELKLDGIKAASINGDKSQGARQKALDDFKAGKIRALIAT 305

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   ++  +  +     +H++ GR GR  +    +      +S++ +  L
Sbjct: 306 DVAARGLDIQELEQVVNFDMPYKAEDYVHRI-GRTGRAGKEGFAVSF----MSRDEHYLL 360

Query: 609 SVLKNTED 616
             ++   D
Sbjct: 361 EAIERLLD 368


>gi|228908214|ref|ZP_04072060.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 200]
 gi|228851412|gb|EEM96220.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 200]
          Length = 454

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   +    +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKINPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|47570033|ref|ZP_00240694.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|47553285|gb|EAL11675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
          Length = 451

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 26  TPIQEQAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPT 79

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 80  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 135

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 136 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 194

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +         IE+  +  ++  K     ++  + +      F     R
Sbjct: 195 KRYMD-EPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 253

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 254 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 313

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 314 FNFDIPEDVESYIHRI-GRTGRAGGSGIAITFVAAKDEKHLEEIEKTL 360


>gi|91179150|gb|ABE27759.1| vasa [Chlamys farreri]
          Length = 801

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 138/381 (36%), Gaps = 44/381 (11%)

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            +G +   +  +    PT  Q+ +I  +   MS ++ M        GSGKT   L+ +  
Sbjct: 360 YDGFMTNLVKAHFE-KPTPVQKYSIPIV---MSGRDLM---ACAQTGSGKTAAFLLPVLT 412

Query: 317 AVEAGG------------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
            +   G            QA+++AP   LA Q +   +K++  T +   ++ G     ++
Sbjct: 413 GMMKNGLTGSAFSDVQEPQALVVAPTRELALQIFNDARKFSHGTMLRPVVLYGGTSVGYQ 472

Query: 365 RKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            K +E      AHI++GT     D      I   KL  +I+DE  R      L +     
Sbjct: 473 LKQVEN----GAHIVVGTPGRLIDVINKGKISLAKLKYLILDEADRM-----LDMGFGPD 523

Query: 420 APHVLLMTATPI---PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
              ++    TP     +TL+ ++    +I K+           TV        +V +   
Sbjct: 524 IKKIVHELGTPEKTERQTLMFSATFPEEIQKLAGDFLNDYLFLTVGRVGGACSDVTQHF- 582

Query: 477 VVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
             +   +K   +C  + E            +   +   S           IHG     ++
Sbjct: 583 FQVDRQQKRQKLCDILSESGADKTLVFVEQKRNADFLASYLSESGFPTTSIHGDRLQRER 642

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E  +  FK G   +LIAT+V   G+D+ +   +I  +        +H++ GR GR   + 
Sbjct: 643 EEALRDFKQGKAPILIATSVAARGLDIPNVKHVINYDLPQSIDEYVHRI-GRTGRCGNLG 701

Query: 591 SCILLYHPPLSKNSYTRLSVL 611
                +      +    L  +
Sbjct: 702 KATSFFSEDGDGSLAKPLMRI 722


>gi|190892959|ref|YP_001979501.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
 gi|190698238|gb|ACE92323.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
          Length = 565

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 138/370 (37%), Gaps = 43/370 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--------GQ 323
           +PT  QE AI  +LQ          I     G+GKT    + +   + A          +
Sbjct: 45  TPTPIQEQAIPLLLQGRD------LIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTTR 98

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   L  Q  + +KK+ + + + + ++ G +    ++  LE+       +++ T 
Sbjct: 99  TLILAPTRELVNQIADNLKKFIRKSPLRINVVVGGVSINKQQLQLEK----GTDVLVATP 154

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPR 433
               D +            L+L   D+    G    L+   K        +L +AT    
Sbjct: 155 GRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKKRQTMLFSATMPKA 214

Query: 434 TLVLTSLGDIDISKITEKPAGR--KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L     +D  K+   P G+    ++  +  +   ++  E L+  L+E      I   
Sbjct: 215 IADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKSLTENPDGRAIVFL 274

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   E+     ++   S+A IHG  S   +E  + +F++G+ K LIAT V 
Sbjct: 275 -------RTKHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSIKTLIATDVA 327

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+   S +   +      A +H++ GR  R       I    P  +K       ++
Sbjct: 328 ARGIDIPAVSHVYNYDLPEVPDAYVHRI-GRTARAGRDGIAIAFCAPDEAKLLRDIERLM 386

Query: 612 KNTEDGFLIA 621
                G  IA
Sbjct: 387 -----GIDIA 391


>gi|156089485|ref|XP_001612149.1| eukaryotic translation initiation factor 4A [Babesia bovis T2Bo]
 gi|154799403|gb|EDO08581.1| eukaryotic translation initiation factor 4A, putative [Babesia
           bovis]
          Length = 402

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 130/343 (37%), Gaps = 37/343 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  Q+  IK I+++         I Q   G+GKT    IA    ++      Q +I+AP
Sbjct: 52  PSAIQQRGIKPIIENHDT------IGQAQSGTGKTATFSIAALQLIDYSVVSCQVLILAP 105

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ  + +       ++      G          L+       H+++GT     D 
Sbjct: 106 TRELAQQIQKVVLALGDYLKVQCHACVGGTIVRDDVHKLKA----GVHMVVGTPGRVYDM 161

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           I    L        IL   DE    G + ++    +   P V         +  + ++  
Sbjct: 162 IDKKALLTNKIKLFILDEADEMLSRGFKGQIHEVFRRMPPDV---------QVALFSATM 212

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE------K 495
             +I ++T K         V      ++ + +   ++  E  K   +C   E        
Sbjct: 213 PNEILELTTKFMRSPKRILVKKDELTLEGIKQFYVMIDKEEYKFDTLCDLYESVTITQAI 272

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N R  V+   S  +    +++ +HG MS  +++ +M  F++G+ ++LI T ++  GI
Sbjct: 273 IYCNTRRKVDMLTSKMQERDFTVSSMHGDMSQNERDLIMREFRSGSTRVLITTDLLARGI 332

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV   S++I  +        +H++ GR GR       I    P
Sbjct: 333 DVQQVSLVINYDLPMSPDNYIHRI-GRSGRFGRKGVAINFLTP 374


>gi|90577462|ref|ZP_01233273.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90440548|gb|EAS65728.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 432

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 132/363 (36%), Gaps = 28/363 (7%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  I +   T  Q+ AI    +          +     G+GKT    + +   +      
Sbjct: 16  LTEIGYEKLTPVQQKAIPQARRG------ADILALAQTGTGKTAAFSLPIIQKLIEKPKS 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+I+AP   LA+Q    I +Y + T +    I G    + + K LE+      
Sbjct: 70  KSRFNVRALILAPTRELAEQIANNINEYAKYTDVNCTAIFGGKKMSTQEKRLEQ----GV 125

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I++ T     + ++   + L  + E   F    R+       A  V+L      P+T++
Sbjct: 126 DILVATPGRLIEHMELNNVSLANL-EFLVFDEADRMLDMGFIGAIRVILDDIRTKPQTML 184

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     ++ +       KP +  + P N   + I  +   + E +K   +   I +K 
Sbjct: 185 FSATSSAQMNSLASD-ILHKPQRITVTPENSTADTIAHVVYPVDEDRKREMLSELIGKKN 243

Query: 497 ESN---FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                 F +  E  N L +          + HG  +   +   ++ FK G  ++++AT V
Sbjct: 244 WKQVLVFVNYKETANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATEV 303

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ +   ++  +        +H++ GR GR  +  + I                +
Sbjct: 304 AARGLDIQNLPYVVNYDMPFLAEDYVHRI-GRTGRAGQKGNAISFVSREEELTLVQIERL 362

Query: 611 LKN 613
           +  
Sbjct: 363 IGQ 365


>gi|2992158|dbj|BAA25324.1| Moc2 RNA helicase [Schizosaccharomyces pombe]
          Length = 636

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 58/390 (14%), Positives = 136/390 (34%), Gaps = 56/390 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI----- 326
            PT  Q+++I  +            +     GSGKT   L  + +     G A +     
Sbjct: 191 QPTPVQKNSIPIVTSGRD------LMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQD 244

Query: 327 ----------------MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                           +AP   L  Q +E  +K+   + +    + G      + + +++
Sbjct: 245 AGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQ 304

Query: 371 IAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPH 422
                  ++  T     D I   +        L+L   D     G + +++   +     
Sbjct: 305 ----GCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGAD-- 358

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
              MT+    +TL+ ++    DI ++  +   +  +   +  +    E I +  V + + 
Sbjct: 359 ---MTSVEERQTLMFSATFPRDI-QLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDS 414

Query: 483 KKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +K  ++   +               + + +       +       IHG  +  ++E  ++
Sbjct: 415 EKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALE 474

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G   +++AT V   G+D+ + + +I  +        +H++ GR GR       +  
Sbjct: 475 LFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGQAVAF 533

Query: 596 YHPPLSKNSYTRLSVLKNTED---GFLIAE 622
           ++      +   + +L+        FLIA 
Sbjct: 534 FNRNNKGIAKELIELLQEANQECPSFLIAM 563


>gi|84387538|ref|ZP_00990556.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
 gi|84377586|gb|EAP94451.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
          Length = 531

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 134/343 (39%), Gaps = 36/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
            P+  QE A+  +L           +     G+GKT    + +   +  G +       A
Sbjct: 23  KPSPIQEKAVPAVLTGKDV------MAAAQTGTGKTAGFTLPILEMLSKGPRVRQNQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q    + KY  N  +   ++ G +    + + L +     + +++ T  
Sbjct: 77  LVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLRK----GSDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRK-------ILAFLPKKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N     +E+    + + KK+  +   I++     
Sbjct: 186 ATFSDDIRGLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKSAMLAKLIKDNDWRQ 245

Query: 500 FRSVVER---FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                +     N L         S A IHG  S   +   +++FK G  ++L+AT +   
Sbjct: 246 VLVFSKTKHGANKLSHFLDEQGISAAPIHGNKSQGARTKALENFKTGKVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           GID+     ++  +  +     +H++ GR GR  E+   I L 
Sbjct: 306 GIDIPQLPQVVNFDLPNVSEDYVHRI-GRTGRAGEVGKAISLV 347


>gi|306830918|ref|ZP_07464080.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426941|gb|EFM30051.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 526

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 70/368 (19%), Positives = 128/368 (34%), Gaps = 34/368 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     ++      QA+++A
Sbjct: 23  EPSPIQELTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLDKIDTNRNLVQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ +   + V  + G      + KAL       AHI++GT     D
Sbjct: 77  PTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLV 436
            I+   L L  V        DE    G        +++       LL +AT     + + 
Sbjct: 133 LIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLFSATMPEAIKRIG 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +  + + +  K+  K      +    I +   D+     +++     +   +  +     
Sbjct: 193 VKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMDVNQPELSIVFGRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D
Sbjct: 249 ----KRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + +   +      + +H++ GR GR  +    I    P           + K    
Sbjct: 305 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKHGQSITFVAPNEMGYLSIIEKLTKKRMK 363

Query: 617 GFLIAEED 624
           G   A  D
Sbjct: 364 GLKPATAD 371


>gi|254491257|ref|ZP_05104438.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224463770|gb|EEF80038.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 442

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 141/376 (37%), Gaps = 42/376 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  I+Q          +     G+GKT    + +   + +G        +A
Sbjct: 23  TPSPIQAKAIPPIMQGHDV------MAAAQTGTGKTAGFTLPLLHRLASGKPASANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  + ++ Y +   +   ++ G +    +   L R     A I++ T  
Sbjct: 77  LVLTPTRELAAQVADSVQTYGKFLPLRSTVVFGGVKINPQMMRLRR----GADILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L ++I+DE  R      +   +K       +++  P  R  ++ S
Sbjct: 133 RLLDLYQQNAVRFDHLEVLILDEADRMLDMGFIHDIRK-------IISFLPKKRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                  +   K     PI+  + P N     +++    + + KK   +   I   + + 
Sbjct: 186 ATFSTDIRSLAKTLVNNPIEISVSPANSTATTVKQWIAPVDKKKKPELLSQLINTHQWTQ 245

Query: 500 FRSVVER---FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                      N L  H  S   S A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANKLTRHLESVGLSAAAIHGNKSQGARTKALADFKAGDKQILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL-- 611
           G+D+     ++  +  +     +H++ GR GR       I L      ++ +    ++  
Sbjct: 306 GLDIDQLPHVVNFDLPNVAEDYVHRI-GRTGRAGATGEAISLVSADEVEHLWNIERLIGK 364

Query: 612 ---KNTEDGFLIAEED 624
              +   +GF   + D
Sbjct: 365 NLPREVVEGFEP-QHD 379


>gi|126659493|ref|ZP_01730626.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
 gi|126619227|gb|EAZ89963.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
          Length = 478

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 140/364 (38%), Gaps = 34/364 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L+ + F  PT+ QE AI  +L+          + Q   G+GKT    + +   ++   + 
Sbjct: 18  LQTLGFESPTEIQEKAIPLLLEGHDV------LGQSQTGTGKTAAYSLPILEQIDTRNSN 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LAQQ  E +K ++   ++ +  + G      + ++LER       I++G
Sbjct: 72  VQALILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIRSLER----GVQIVVG 127

Query: 382 THALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D ++  KL+L  +     DE         +   +        ++  TP  R   
Sbjct: 128 TPGRVIDLLERKKLVLDSLRWAVLDEADEMLSMGFIDDVKT-------ILRKTPDARNTA 180

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
             S       +       + P+   +         I++   ++  G         I E +
Sbjct: 181 CFSATMPREIRDLVNQFLKSPVTVSVERTQAAPTRIDQHLYMVPRGWSKRKALQPILEIE 240

Query: 497 ESNFRSVVER-------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +     +  R         S  +    S+   HG +S   +E ++  F++G  KL++AT 
Sbjct: 241 DPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   G+DV + S +I  +        +H++ GR GR  +  + I L  P   +       
Sbjct: 301 IAARGLDVENLSHVINYDLPDNSETYIHRI-GRTGRAGKTGTAISLIEPIDRRMVRQIEK 359

Query: 610 VLKN 613
            L+ 
Sbjct: 360 RLRQ 363


>gi|71280656|ref|YP_266818.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71146396|gb|AAZ26869.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 420

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 69/374 (18%), Positives = 138/374 (36%), Gaps = 37/374 (9%)

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
            K+      +++  + + I  +    PT+ Q+ +I  IL    + + M R      G+GK
Sbjct: 2   AKRMTFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILA---KHDVMAR---AQTGTGK 55

Query: 307 TLVALIAMAAAV------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           T    + +   +      +   +A+++ P   LAQQ ++    Y Q T + + I  G + 
Sbjct: 56  TAAFALPILQQLISVQPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVS 115

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL 412
              +   L+        I+I T     D ++           L+    D     G ++ +
Sbjct: 116 TKKQISELKV----GVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEI 171

Query: 413 KLT--QKATAPHVLLMTATPIPRTLVLT--SLGDIDISKITEKPAGRKPIKTVIIPINRI 468
                        LL +AT       ++   L +  + +I EK      ++ ++  ++  
Sbjct: 172 DQITQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDAD 231

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
            +      ++ S   K   +  + ++  +       +    + +    S+AI HG  S  
Sbjct: 232 RKRELTSFLIGSRNWKQVLVFTRTKQCAD-------DLAKEMTKDGVKSLAI-HGDKSQG 283

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            +E  +  FK G  + LIAT V   GID+   S +I     +     +H++ GR  R   
Sbjct: 284 AREKALHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRI-GRTARAGN 342

Query: 589 ISSCILLYHPPLSK 602
               + L  P    
Sbjct: 343 SGLAVSLVSPGEEW 356


>gi|83318931|emb|CAJ38803.1| Vasa protein isoform [Platynereis dumerilii]
          Length = 732

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 140/398 (35%), Gaps = 49/398 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-----------G 321
           PT  Q+ AI  +L           +     GSGKT   L+ +   +             G
Sbjct: 313 PTPIQKWAIPIVLSGKD------LMGCAQTGSGKTAAFLLPVLTGIIKNDLIEGGSGFGG 366

Query: 322 GQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            Q   A+I+ P   L  Q Y   +K+  +T +   ++ G     ++ + LE+     AH+
Sbjct: 367 PQYPAAIIVGPTRELVNQIYLEARKFASSTCVRPVVVYGGTSVGYQARELEK----GAHV 422

Query: 379 IIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRL------KLTQKATAPHVL 424
           ++GT     D I        +   LIL   D     G +  +          +      L
Sbjct: 423 VVGTPGRLLDFIGKGKINLSKVKYLILDEADRMLDMGFEPEIRKLVTTFDMPEKGQRQTL 482

Query: 425 LMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           + +AT     + L    L +     +         I   +  + + ++  + ++++   G
Sbjct: 483 MFSATFAAEIQQLAKEFLSEYVFVTVGRVGGANSDITQEVHQVTKYEKREKLVEILNQAG 542

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                +            +   +   +           IHG     ++E  +  FK G  
Sbjct: 543 TDRTLVFL--------ETKRSADFLAAYLSQEQYPATSIHGDRLQREREEALLDFKTGRA 594

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +LIAT+V   G+D+     +I  +        +H++ GR GR   +      + P +++
Sbjct: 595 PILIATSVAARGLDIPGVKHVINYDLPSGIDEYVHRI-GRTGRCGNLGKATSFFDPDVNQ 653

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           +     S++K   D   +    L++  EG I    Q G
Sbjct: 654 DKELARSLVKTLGDAQQVVPPWLEEIAEGAISSGFQGG 691


>gi|70663480|emb|CAJ15139.1| vasa homlogue [Platynereis dumerilii]
          Length = 712

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 140/398 (35%), Gaps = 49/398 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-----------G 321
           PT  Q+ AI  +L           +     GSGKT   L+ +   +             G
Sbjct: 293 PTPIQKWAIPIVLSGKD------LMGCAQTGSGKTAAFLLPVLTGIIKNDLIEGGSGFGG 346

Query: 322 GQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
            Q   A+I+ P   L  Q Y   +K+  +T +   ++ G     ++ + LE+     AH+
Sbjct: 347 PQYPAAIIVGPTRELVNQIYLEARKFASSTCVRPVVVYGGTSVGYQARELEK----GAHV 402

Query: 379 IIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRL------KLTQKATAPHVL 424
           ++GT     D I        +   LIL   D     G +  +          +      L
Sbjct: 403 VVGTPGRLLDFIGKGKINLSKVKYLILDEADRMLDMGFEPEIRKLVTTFDMPEKGQRQTL 462

Query: 425 LMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           + +AT     + L    L +     +         I   +  + + ++  + ++++   G
Sbjct: 463 MFSATFAAEIQQLAKEFLSEYVFVTVGRVGGANSDITQEVHQVTKYEKREKLVEILNQAG 522

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                +            +   +   +           IHG     ++E  +  FK G  
Sbjct: 523 TDRTLVFL--------ETKRSADFLAAYLSQEQYPATSIHGDRLQREREEALLDFKTGRA 574

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +LIAT+V   G+D+     +I  +        +H++ GR GR   +      + P +++
Sbjct: 575 PILIATSVAARGLDIPGVKHVINYDLPSGIDEYVHRI-GRTGRCGNLGKATSFFDPDVNQ 633

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           +     S++K   D   +    L++  EG I    Q G
Sbjct: 634 DKELARSLVKTLGDAQQVVPPWLEEIAEGAISSGFQGG 671


>gi|50293017|ref|XP_448941.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661092|sp|Q6FLF3|DBP2_CANGA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49528254|emb|CAG61911.1| unnamed protein product [Candida glabrata]
          Length = 544

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 75/385 (19%), Positives = 143/385 (37%), Gaps = 45/385 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L        M+ I     GSGKTL   +     + A        G  
Sbjct: 132 KPTSIQCQGWPMAL----SGRDMVGI--AATGSGKTLSYCLPGIVHINAQPLLSPGDGPI 185

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +   K+ ++++I    + G +P+  + + L R     A I+I T 
Sbjct: 186 VLVLAPTRELAVQIQKECSKFGKSSRIRNTCVYGGVPRGQQIRELIR----GAEIVIATP 241

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 242 GRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 301

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLKVVLSEGKKAYW 487
            + L    L D    +I           T    V+    + D +++ L     + +    
Sbjct: 302 VQQLARDYLNDPIQVQIGSLELAASHNITQLVEVVSEFEKRDRLVKHLDTASQDKESKIL 361

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I         S  R+  E  + L +    ++AI HG     +++ V++ F+ G   +++A
Sbjct: 362 IF-------ASTKRTCDEITSYLRQDGWPALAI-HGDKDQRERDWVLNEFRTGNSPIMVA 413

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV   + ++  +        +H++ GR GR     + I  +         + 
Sbjct: 414 TDVAARGIDVKGINFVVNYDMPGNIEDYVHRI-GRTGRAGATGTAISFFTEDNKSLGASL 472

Query: 608 LSVLKNTEDGF--LIAEEDLKQRKE 630
           +S+++  +      + + D + R  
Sbjct: 473 ISIMREAKQNIPEELMKYDRRPRGP 497


>gi|89070055|ref|ZP_01157386.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicola granulosus HTCC2516]
 gi|89044392|gb|EAR50530.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicola granulosus HTCC2516]
          Length = 680

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 147/383 (38%), Gaps = 37/383 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
           + T  QE+     L+      +   ++    GSGKT+   +A+A  + AG          
Sbjct: 16  TLTAVQEAVTDPALE------QADLLVSAQTGSGKTVGFGLAIAPTLLAGEERMGPAAAP 69

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+AP   LA Q    ++     T   V    G M     R+ALER     AHI++GT
Sbjct: 70  LALIVAPTRELAFQVRRELEWLYARTGAQVTSCVGGMDMRSERRALER----GAHIVVGT 125

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP 432
               +D IQ   L L  +        DE    G ++ L   L         L+ +AT  P
Sbjct: 126 PGRLRDHIQRGSLELESIRAVVLDEADEMLDLGFREDLEFMLAAAPEDRRTLMFSATVPP 185

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
               L      D  +++ +  G++        +    +  E   + +     A       
Sbjct: 186 MIATLAKHYQRDAVRVSTQSTGKQHADIAYQAVKVAQQDAENAIINILRFHDAENAIVF- 244

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +N R++V R  +   +   ++  + G +S  ++   + + ++G  ++ +AT V  
Sbjct: 245 -----ANTRAMVARLTARFSNRGFAVVSLSGELSQNERTHALQAMRDGRARVCVATDVAA 299

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+ +  +++           LH+  GR GR        L+  P + K +   L   K
Sbjct: 300 RGIDLPNLDLVVHAELPTNVEGLLHR-SGRTGRAGRKGISALVVPPKMVKRAERLLKWAK 358

Query: 613 NTEDGF-LIAEEDLKQRKEGEIL 634
            + +     + ED+  R E  +L
Sbjct: 359 ISAEWITAPSAEDILARDEERLL 381


>gi|150390712|ref|YP_001320761.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950574|gb|ABR49102.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 433

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 145/373 (38%), Gaps = 33/373 (8%)

Query: 260 KIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           K  Q+ L    ++  T  QE AI  +L+ M        +     G+GKT    I +   +
Sbjct: 10  KPIQRALTTEGYTEATPIQEKAIPSLLKGMD------LLGCAQTGTGKTAAFAIPILQGL 63

Query: 319 EAGG---------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            +           QA+I+AP   LA Q  +  + Y ++  +   +I G + Q  + K+L 
Sbjct: 64  SSEQRNLKGSRQIQALILAPTRELAIQIADSFETYGKHLGLRTLVIYGGVSQHPQTKSLN 123

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA- 428
           R       I++ T     D I    + L  +     F + +   +        V  +   
Sbjct: 124 R----GIDILVATPGRLLDLINQKFVRLNSI---KYFVLDEADMMLDMGMIHDVRRIIKY 176

Query: 429 -TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              + +T+  ++    +I+K+ ++   ++P+K  I P++   ++IE+    +++  K   
Sbjct: 177 IPAVRQTMFFSATMPAEIAKLADQ-ILKEPVKVEITPVSSTVDIIEQAVYYVNKSNKVQL 235

Query: 488 ICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +   ++ K        S  +   ++     E        IHG  S   ++  +++FK   
Sbjct: 236 LIHLLKSKAIVSALVFSRTKHGADKIVKSLEKAGLQAQAIHGNKSQNARQLALNNFKERK 295

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L+AT +   GIDV + S +I  +        +H++ GR GR       I        
Sbjct: 296 TRILVATDIAARGIDVEELSHVINFDLPEVPETYVHRI-GRTGRAGLGGIAISFCAQEEK 354

Query: 602 KNSYTRLSVLKNT 614
                   ++  +
Sbjct: 355 NLLKEIQKLISKS 367


>gi|258620256|ref|ZP_05715295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM573]
 gi|258623978|ref|ZP_05718931.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM603]
 gi|258583772|gb|EEW08568.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM603]
 gi|258587614|gb|EEW12324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM573]
          Length = 422

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 124/355 (34%), Gaps = 29/355 (8%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q+ AI  +LQ          +     G+GKT    + +                  
Sbjct: 29  PTPIQQQAIPHVLQGKDV------LAGAQTGTGKTAAFGLPLIQRFIEQPWVREENSKEI 82

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I T
Sbjct: 83  RALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQLNHLR----GGVDILIAT 138

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D      L L  V E        R+           +L   +P+ +TL  ++  D
Sbjct: 139 PGRLLDHAHVKSLFLGKV-EVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFD 197

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
             I  +  +   R P++  + P N   E ++++   + + +K   +   I  K       
Sbjct: 198 SKIKAVAYR-IMRDPVEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLV 256

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               R   +      +        I+G  S   ++  +D FK G  + LIAT V   G+D
Sbjct: 257 FTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLD 316

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           +     ++  +        +H++ GR GR       + L              +L
Sbjct: 317 IAQLEQVVNYDMPFKAEDYVHRI-GRTGRAGLAGLAVSLLSHDEEPQLEAIERLL 370


>gi|300023857|ref|YP_003756468.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525678|gb|ADJ24147.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 540

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 128/349 (36%), Gaps = 42/349 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q +AI   L           +     G+GKT   ++ M   +E G       +++I
Sbjct: 27  PTPIQAAAIPVALTGRDV------LGIAQTGTGKTASFVLPMITRLETGRARARMPRSLI 80

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +AP   LA Q  +  +KY  N ++ V ++ G +    + K L+R       ++I T    
Sbjct: 81  LAPTRELAAQVAQSFEKYGTNHKLSVALLIGGVSMDDQVKKLDR----GVDVLIATPGRL 136

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTLV 436
            D     +++L+ V     DE  R      +   +K           L  +AT  P    
Sbjct: 137 LDHFGRGRVMLMGVEILVIDEADRMLDMGFIPDIEKICKLLPPRRQTLFFSATMPPEITR 196

Query: 437 LTSLGDIDISKIT-EKPAGRKPIKT--VIIPINRIDEVIERLKVVLSEG---KKAYWICP 490
           L      D ++I   KPA      T   +   N  D     +   L      K A   C 
Sbjct: 197 LVDQFLKDPTRIEVAKPATTAKTITQRFVYCQNGEDWAKREMLRELIRDGNVKNAIIFCN 256

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         R V   + SL +H   +   +HG M    +   +D F+NG   LL A+ V
Sbjct: 257 R--------KRDVAVLYKSLSKHG-FNAGELHGDMDQTSRTETLDKFRNGEIMLLAASDV 307

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              G+D+ D S +   +        +H++ GR GR         L  P 
Sbjct: 308 AARGLDIPDVSHVFNFDLPWAADDYVHRI-GRTGRAGREGHSASLVSPD 355


>gi|212224191|ref|YP_002307427.1| DEAD/DEAH box RNA helicase [Thermococcus onnurineus NA1]
 gi|212009148|gb|ACJ16530.1| DEAD/DEAH box RNA helicase [Thermococcus onnurineus NA1]
          Length = 403

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 79/345 (22%), Positives = 127/345 (36%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT  Q+  I  +L           I Q   G+GKT    + +  A+   E   QA+I+A
Sbjct: 23  QPTDIQKEVIPRLLSG-----DADIIGQSQTGTGKTAAFALPIIEAIDEKEKSVQAIILA 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + IK      ++ V  + G  P   + +ALER      H+++GT     D
Sbjct: 78  PTRELALQVADEIKSLRGRKRVYVYAVYGGQPIGPQIRALER----GTHVVVGTPGRVLD 133

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        IL   D     G    +     +      VL+ +AT     L L 
Sbjct: 134 HIRRGTLDLSKVKFFILDEADRMLDMGFIDDIEAIFRETPKKKRVLMFSATMPREILRLA 193

Query: 439 SLGDIDISKITE-----KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
                D   I        P   +     ++P  +   +    K +LS+       C    
Sbjct: 194 RRYMNDYEVIKVSSDELVPGMVEQEYIEVVPARKFSTL----KKILSDDFYGIVFCATKR 249

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           E +E + +   + +         S   ++G MS   +E     FK    ++L+AT V   
Sbjct: 250 ETRELSEKLRKQGY---------SAEALNGDMSQAARERTFWRFKTKRTRILVATDVAAR 300

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+DV D S I+  +        +H++ GR GR  +    +    P
Sbjct: 301 GLDVQDISHIVNYSLPMTAEDYVHRI-GRTGRMGKKGKAVTFIMP 344


>gi|34557821|ref|NP_907636.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Wolinella
           succinogenes DSM 1740]
 gi|34483539|emb|CAE10536.1| ATP-DEPENDENT RNA HELICASE, DEAD-BOX FAMILY DEAD [Wolinella
           succinogenes]
          Length = 505

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 75/362 (20%), Positives = 135/362 (37%), Gaps = 33/362 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAPI 330
           P+  Q  AI  +L           I Q   G+GKT    + +   ++  G  +A+I+ P 
Sbjct: 37  PSPIQVEAIPLVLGGHD------LIAQAQTGTGKTAAFGLPIIQNLKNDGSIEALIITPT 90

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  + I K  +N +     + G      + + LE+       +II T     D +
Sbjct: 91  RELAVQISDEIFKLGRNCRTKTVSVYGGQAIRRQVELLEKA----PQVIIATPGRLLDHL 146

Query: 391 QYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +  +L        +L   DE    G         T    +   LL +AT P P + L   
Sbjct: 147 RNDRLKNFNPTTIVLDESDEMLDMGFLDDIEEIFTYLPASRQTLLFSATMPAPIKNLAQK 206

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            L +  + K+T        I      IN  +     ++++ SE      I  +       
Sbjct: 207 ILHNPKMVKVTTNETTNSDISQRYYIINEYEREDAIVRLIDSEAPSKTIIFTR------- 259

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +   +  ++           +HG M   ++++ +++FK G   +L+AT V   G+D+ 
Sbjct: 260 -MKKEADDLSNRLIAKGYQAGALHGDMEQRERQAAVNAFKQGAIDILVATDVAARGLDIS 318

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           + S +   +      + +H++ GR GR  +    I L  P   K         K T + +
Sbjct: 319 NVSHVFNYHIPLNPESYVHRI-GRTGRAGKKGIAITLATPLEFKEIRRISETTKATIELY 377

Query: 619 LI 620
            I
Sbjct: 378 EI 379


>gi|218897409|ref|YP_002445820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228901054|ref|ZP_04065263.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 4222]
 gi|228965436|ref|ZP_04126523.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218541264|gb|ACK93658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228794267|gb|EEM41784.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228858570|gb|EEN03021.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 4222]
          Length = 450

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   +    +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKINPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|28211793|ref|NP_782737.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28204235|gb|AAO36674.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 370

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 122/341 (35%), Gaps = 34/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q  +I  I +          I +   G+GKTL  L+ M   +       Q +I+ 
Sbjct: 24  SPTPIQRESILLIKEG------NDVIAEAQTGTGKTLAFLLPMFENMSPNINTIQGLIVT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  ++  + +    G      +   L     G  H++I T     D
Sbjct: 78  PTRELAIQITEEAMKLNESKDLNILSAYGGKDIGSQLNKL----KGNIHLVIATPGRLLD 133

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP--IPRTLV 436
            +            L+L   D+    G +  +   +   +     L  +AT     + L 
Sbjct: 134 HLDRNTIDLKNLKTLVLDEADQMLLMGFKNEVETIIKHTSKNRQTLCFSATMNSSVKKLA 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              + D  +  I ++    K IK V+I     +++ +  KV+         I  +     
Sbjct: 194 YKYMDDPKLITIQKEEITLKNIKQVLIETTDRNKLDDLCKVLNETNPFMAIIFCRT---- 249

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V++          +   +HG ++   +E VM  FKN   + LIAT V   G+D
Sbjct: 250 ----KRRVDKLEMDLYQRGYNCKKLHGDLTQSKREKVMKDFKNTKIQYLIATDVAARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +   + I   +        +H++ GR GR  E     L   
Sbjct: 306 ITGVTHIYNYDIPENTENYIHRI-GRTGRAGEKGYAYLFID 345


>gi|20806137|ref|NP_620798.1| probable ATP-dependent RNA helicase DDX46 [Rattus norvegicus]
 gi|81890303|sp|Q62780|DDX46_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46; AltName: Full=Helicase of
           117.4 kDa
 gi|897915|gb|AAC52210.1| RNA helicase [Rattus norvegicus]
 gi|78174325|gb|AAI07591.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Rattus norvegicus]
          Length = 1032

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 149/384 (38%), Gaps = 41/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 427

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 428 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 487

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 488 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 543

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 544 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 596

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 597 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 715

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 716 KGYAYTFITEDQARYAGDIIKALE 739


>gi|332826518|gb|EGJ99347.1| hypothetical protein HMPREF9455_00380 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 371

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 136/346 (39%), Gaps = 37/346 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QA 324
           PT  QE AI  +L++      ML + Q   G+GKT    I +   +            +A
Sbjct: 24  PTPIQEDAIPVVLKN----QDMLGLAQ--TGTGKTAAFSIPIIQHLYQNKISGRKREIRA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + I++YT  T +   +I G + Q  +   L +       I++ T  
Sbjct: 78  LIITPTRELAIQINDCIREYTLYTGLRHCVIFGGVKQKAQTDELHK----GIDILVATPG 133

Query: 385 LFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D +    + L  +     DE  R      +   +       LL       +TL  ++
Sbjct: 134 RLLDLMNQGFVSLNAITHFVLDEADRMLDMGFIHDIK------RLLPKLPKDKQTLFFSA 187

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                I+ ++ +   R P++  + P++ + +VIE+    + +  K   +   +++ K+  
Sbjct: 188 TMPPAIAALS-RSILRNPVRVEVAPVSSVVDVIEQSVYFVEKQDKKDLLINLLKKDKKQS 246

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   ++   L          IHG  S   ++  + +FK+   ++LIAT +   
Sbjct: 247 VLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALANFKSHKTRVLIATDIAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV    ++I  +        +H++ GR GR     + +      
Sbjct: 307 GIDVNQLELVINYDLPDVPETYVHRI-GRTGRAGHSGTALTFCAED 351


>gi|301772834|ref|XP_002921834.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic initiation factor
           4A-III-like [Ailuropoda melanoleuca]
          Length = 417

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 138/373 (36%), Gaps = 34/373 (9%)

Query: 269 IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQA 324
           + F  P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA
Sbjct: 62  LGFEKPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQA 115

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+AP   LA Q  + +        +      G        + L+       H++ GT  
Sbjct: 116 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPG 171

Query: 385 LFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRT 434
              D I+   L        +L   DE    G ++++         A  V+L++AT     
Sbjct: 172 RVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEI 231

Query: 435 LVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           L +T+    D  +I  K      + IK   + + R +   + L          Y      
Sbjct: 232 LEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTIT 284

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +     N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V  
Sbjct: 285 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 344

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   S+II  +  +     +H++ GR GR       I        +          
Sbjct: 345 RGLDVPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYS 403

Query: 613 NTEDGFLIAEEDL 625
              D   +   DL
Sbjct: 404 TQIDEMPMNVADL 416


>gi|296533085|ref|ZP_06895723.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
 gi|296266590|gb|EFH12577.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
          Length = 389

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 131/369 (35%), Gaps = 32/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q  AI  +L           +     G+GKT    + +   +          G +
Sbjct: 24  TPTPIQAQAIPHVLAGRD------LLGIAQTGTGKTAAFALPVLHHLADRKAPAPRGGCR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I++P   LA Q ++ I+ Y +   +   +I G +    + +AL R       +++ T 
Sbjct: 78  ALILSPTRELASQIHDNIRAYGRFLGLSSAVIFGGVGARPQVEALRR----GVDVLVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
              QD +Q     L  V E        ++       A   L    +   +TL  ++    
Sbjct: 134 GRLQDHVQTGAAKLQGV-EVLVLDEADQMLDRGFWPAVKRLSSVMSKNRQTLFFSATMPA 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK------KE 497
           +I+KI      + P K  + P+    E IE+  + +   +K   +   + +         
Sbjct: 193 EIAKIAA-EMLKDPAKVSVTPVATTAERIEQKLIHIDASQKRVLLSEMLRQPGIGRALVF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   +R          +   IHG  S   +E  +  F+ G   +L+AT +   GIDV
Sbjct: 252 ARTKHGADRVTKHLNADGIAAHAIHGDRSQGQRERALAEFRTGRAPILVATDIASRGIDV 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              + +   +      A +H++ GR  R       I    P           ++      
Sbjct: 312 DGVTHVFQFDLPDTPEAYVHRI-GRTARAGASGEAIAFCAPDEVAKLKAVEKLIA----- 365

Query: 618 FLIAEEDLK 626
             I  ED +
Sbjct: 366 MKIPAEDRR 374


>gi|229072918|ref|ZP_04206114.1| ATP-dependent RNA helicase dbpA [Bacillus cereus F65185]
 gi|228710164|gb|EEL62142.1| ATP-dependent RNA helicase dbpA [Bacillus cereus F65185]
          Length = 481

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 138/371 (37%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYDHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+   L L  +        DE    G   ++   + +  T    +L +AT  
Sbjct: 129 TPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +I         I+  +  +   +++     V   E   +  I 
Sbjct: 189 EDVEKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  +R          +        IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVYRQ--------LKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|170578338|ref|XP_001894368.1| ATP-dependent helicase DDX48 [Brugia malayi]
 gi|158599081|gb|EDP36794.1| ATP-dependent helicase DDX48, putative [Brugia malayi]
          Length = 399

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 134/345 (38%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    IA+  +++      QA+I++
Sbjct: 53  KPSAIQQRAIKQIVKGRDV------IAQAQSGTGKTATFSIAVLQSLDISLRETQALILS 106

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 107 PTRELAVQIQKVVLALGDYLNVQCHACIGGTNVGEDIRKLDYGQ----HVVSGTPGRVFD 162

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G +++L    +       V+L++AT     L +T
Sbjct: 163 MIRRRNLRTRSIKMLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMT 222

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    D  +I  K      + IK   + ++R +   + L  +       +A   C     
Sbjct: 223 SKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLCDLYDTLTITQAVIFCNT--- 279

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R  V+      +    +++ +HG M   +++++M  F+ G  +LLI+T V   G
Sbjct: 280 ------RRKVDWLAEKLKEANFTVSSMHGEMEQKERDAIMKEFRGGASRLLISTDVFARG 333

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +D+   S+++  +  +     +H++ GR GR       I      
Sbjct: 334 LDIPQVSLVVNYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSD 377


>gi|238762292|ref|ZP_04623264.1| ATP-independent RNA helicase dbpA [Yersinia kristensenii ATCC
           33638]
 gi|238699639|gb|EEP92384.1| ATP-independent RNA helicase dbpA [Yersinia kristensenii ATCC
           33638]
          Length = 460

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 85/459 (18%), Positives = 173/459 (37%), Gaps = 58/459 (12%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + ++  T  Q +A+  IL     +       +   GSGKT    I +   +  G   
Sbjct: 19  LNELGYTEMTPVQAAALPAILNGQDVR------AKAKTGSGKTAAFGIGLLDKIAVGEFV 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  + TQ I +  + G  P  H+  +L        HI++
Sbjct: 73  TQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHA----PHIVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L+L  + +        R+       A   ++    P  +TL+ ++ 
Sbjct: 129 GTPGRIQEHLRKKTLVLDDL-KILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I +I+ +   R+P+   +   +    + +       E +    I      +     
Sbjct: 188 YPAGIEQISAR-VQRQPVNVEVDDGDEAPAIEQVFFETTREKRLPLLISALSYYQPASCV 246

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +   +      E    S+  +HG +   D++ V+  F N +C++L+AT V   G+
Sbjct: 247 VFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGL 306

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN-- 613
           D+ D  +++           +H++ GR GR       + L  P     ++     ++   
Sbjct: 307 DIKDLELVVNFELAFDPEIHVHRI-GRTGRAGMSGLAVSLCTPQEMTRAHAIEDYMQMKL 365

Query: 614 -----------------------TEDGFLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQ 648
                                    DG   A    K R  G+ILG    ++G+    + +
Sbjct: 366 KWTPAEQVSRSANTMLEPEMVTLCIDGGRKA----KIR-PGDILGALTGEAGLTAADVGK 420

Query: 649 PELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            ++    + + I +  AK  L Q      ++G++ +  L
Sbjct: 421 IDMFPVHAYVAIRKASAKRALQQL-QQGKIKGKNCKARL 458


>gi|143636073|gb|ABO93350.1| vasa-like protein [Hydractinia echinata]
          Length = 680

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 137/375 (36%), Gaps = 49/375 (13%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------- 322
             PT  Q+ AI  IL D         +     GSGKT   L+ + A++            
Sbjct: 244 LKPTPVQKYAIPIILGDRD------LMSCAQTGSGKTAAFLLPVLASIMQHKDQLTSQLS 297

Query: 323 --QA---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             QA   +I+AP   LA Q Y+  +K++  T +   ++ G +  A++   L ++  G  H
Sbjct: 298 EVQAPLGLIIAPTRELANQIYQEARKFSFQTSVRPVVVYGGVSVAYQ---LRQVQSG-CH 353

Query: 378 IIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQK------ATAPHV 423
           +++GT    +D I            L+L   D     G    +K              H 
Sbjct: 354 LLVGTPGRLKDFIGKRKISLENLKYLVLDEADRMLDMGFMPDVKEIIHGFGMPAKEDRHT 413

Query: 424 LLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           L+ +AT     + L    L +     I +  +    I+  +I ++   +  + ++++  E
Sbjct: 414 LMFSATFPEEIQKLAGEFLNNYVFLTIGKVGSTHSDIEQTVIEVDNASKRDKLVEMLGQE 473

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           G     +  Q         +   +   S           IHG      +E  +  F+ G 
Sbjct: 474 GGNKNLVFVQT--------KRQADFLASYLCQNGFPTTSIHGDRFQQQREEALREFRAGQ 525

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +LIAT V   G+D+ D   +I  +        +H++ GR GR          +     
Sbjct: 526 QTVLIATAVAARGLDIADVKQVINYDLPDEIEEYIHRI-GRTGRIGNKGRATSFFSRGND 584

Query: 602 KN-SYTRLSVLKNTE 615
           +  +   +  L ++E
Sbjct: 585 EALARALVKTLADSE 599


>gi|162148820|ref|YP_001603281.1| cold-shock DEAD box protein A-like protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787397|emb|CAP56992.1| Cold-shock DEAD box protein A homolog [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 483

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 69/359 (19%), Positives = 132/359 (36%), Gaps = 37/359 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  Q  AI  +L           +     G+GKT    + M   +          +++I
Sbjct: 6   PTPIQAQAIPYVLMGRDV------LGVAQTGTGKTASFTLPMLEILSGSRARARMPRSLI 59

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E    Y +  ++   ++ G    A ++  L R       ++I T    
Sbjct: 60  LEPTRELALQVAENFVNYGKYLKLNHALLIGGESMAEQKDVLNR----GVDVLIATPGRL 115

Query: 387 QDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            D  +   L+L       +DE  R      +   +K      ++   +P+ +TL  ++  
Sbjct: 116 IDLFERGGLLLTQTRLLVIDEADRMLDMGFIPDIEK------IVAMLSPVRQTLFFSATM 169

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             +I ++ +         TV  P + +   IE   VV+ E  K   +   + +    N  
Sbjct: 170 APEIRRLADMFLQNPKEITVSRPSS-VATTIETGLVVVDEADKRRVLRRMLRDDAVQNAI 228

Query: 502 SVVER-------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               R       + SL +H   S   +HG +    + + ++ FK+G  K+L+ + V   G
Sbjct: 229 VFCNRKRDVDVLYKSLVKH-DFSAGALHGDLPQSVRFATLERFKSGELKILVCSDVAARG 287

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           ID+   S +   +        +H++ GR GR         L  P     +    +++ +
Sbjct: 288 IDIGGLSHVFNFDLPFHAEDYVHRI-GRTGRAGRSGHAYSLATPYDRALAEAIETLIGH 345


>gi|71421857|ref|XP_811932.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70876653|gb|EAN90081.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 631

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 70/381 (18%), Positives = 140/381 (36%), Gaps = 36/381 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+  I  +L           +     GSGKT   LI + +++ +           
Sbjct: 153 KPTPVQKYGIPVVLCGHD------LMACAQTGSGKTAAYLIPLVSSILSNATPNHQGQGS 206

Query: 324 -----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A++MAP   L+ Q +E  +K+T  T I   ++ G     H+   L R       +
Sbjct: 207 RSSPAALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADPRHQVHELSR----GCGL 262

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T     D      + +  +  +++DE  R          +         M      +
Sbjct: 263 LVATPGRLWDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIRMIVQGQESDMPPPGQRQ 322

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++    +I ++  +    +     +  +    E I +    + +  K   +   + 
Sbjct: 323 TLLYSATFPTEIQQLA-REFLHRHYFLQVGRVGSTTENITQDVRWVEDNDKREHLLRLLH 381

Query: 494 EKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           E +          +   +       +   + A IHG     ++E  +  FK+ +C++L+A
Sbjct: 382 ENQNQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMFKSASCQVLVA 441

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+ D SI+I  +        +H++ GR GR  ++   I  ++          
Sbjct: 442 TDVASRGLDIPDVSIVIQYDMPSNIDDYVHRI-GRTGRAGKVGRAISFFNEKNRNIVDDL 500

Query: 608 LSVLKNTEDGFLIAEEDLKQR 628
           + +L  T    L    DL +R
Sbjct: 501 VPLLNETHQNVLQQIMDLTKR 521


>gi|297538310|ref|YP_003674079.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp.
           301]
 gi|297257657|gb|ADI29502.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301]
          Length = 630

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 143/412 (34%), Gaps = 51/412 (12%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            +N++  + + I  +   +PT  Q  AI  +            +     G+GKT   ++ 
Sbjct: 27  SLNLDNALLRAIEESGYTTPTAIQSQAIPVVTAGHD------LMASAQTGTGKTAAFMLP 80

Query: 314 MAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
               +         G + +++ P   LA Q  E  +KY +  +     I G MP   + K
Sbjct: 81  ALNLLATPHELKSRGPRILVLVPTRELATQVNEAARKYGKFIRARTVSIVGGMPYPLQNK 140

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK-----LILVIVDEQHRFGVQQRLKLTQKATAP 421
            L +       I++ T     D ++  +     L ++I+DE  R      L   +     
Sbjct: 141 LLSQP----LDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVE----- 191

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             +    +   +TL+ ++  D DI+++  K   + P    +         IE+    + +
Sbjct: 192 -RICEQLSAERQTLLFSATLDGDIARVA-KQILKNPKTIQVAGQKEKHANIEQRLHYVDD 249

Query: 482 GKKAYWICPQIEEKKESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
                 +   +    E N        +   +             A +HG M+   +   +
Sbjct: 250 MTHKNKLLEHLLIAPEVNQVIIFTSTKRHCDVLAEDLYAAGHKTAALHGDMTQGARNRTL 309

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
              + G  K+L+AT V   GID+   S +I  +   F    +H++ GR GR  +    I 
Sbjct: 310 TKLRQGDVKVLVATDVAARGIDINGISHVINYDLPKFAEDYVHRI-GRTGRAGKTGIAIS 368

Query: 595 LYHPPLSKNSYTRLSVLKNTE---------DGFLIAEEDLKQRKEGEILGIK 637
                 S      L  ++            +GF   +  +K    G   G +
Sbjct: 369 F----ASNMDRHILRKIEQFTGNRMEPGVVEGFEP-KRAMKMDGPGNGRGDR 415


>gi|325977801|ref|YP_004287517.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325177729|emb|CBZ47773.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 526

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 70/368 (19%), Positives = 129/368 (35%), Gaps = 34/368 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     ++      QA+++A
Sbjct: 23  EPSPIQELTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLDKIDTNRNLVQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ +   + V  + G      + KAL       AHI++GT     D
Sbjct: 77  PTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLV 436
            I+   L L  V        DE    G        +++       LL +AT     + + 
Sbjct: 133 LIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLFSATMPEAIKRIG 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +  + + +  K+  K      +    I +   D+     +++  +  +   +  +     
Sbjct: 193 VKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMDVDQPELSIVFGRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D
Sbjct: 249 ----KRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + +   +      + +H++ GR GR  +    I    P           + K    
Sbjct: 305 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKHGQSITFVAPNEMGYLSIIEKLTKKRMK 363

Query: 617 GFLIAEED 624
           G   A  D
Sbjct: 364 GLKPATAD 371


>gi|255089378|ref|XP_002506611.1| predicted protein [Micromonas sp. RCC299]
 gi|226521883|gb|ACO67869.1| predicted protein [Micromonas sp. RCC299]
          Length = 639

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 126/365 (34%), Gaps = 35/365 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA-AVEAGGQA------- 324
           PT  Q+ AI           R   +     GSGKT      +    ++ G QA       
Sbjct: 208 PTPVQKYAIPI------SLKRRDLMACAQTGSGKTAAFCFPIIHGIIDRGLQAPRGGRKT 261

Query: 325 ----VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               ++++P   LA Q +E  +K+   T +   ++ G  P A + + +ER       ++I
Sbjct: 262 FPIALVLSPTRELAIQIHEESRKFAYQTGVASVVVYGGAPAAQQFREMER----GCDMLI 317

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D +   K+ L       +DE  R          Q         M      +T+
Sbjct: 318 ATPGRLIDLVDRAKISLERIQYLALDEADRMLDMGFEP--QIRQIVEQRGMPPPGDRQTM 375

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE-- 493
           + ++    +I ++           TV    +    + + ++ V S   K   +   +   
Sbjct: 376 LFSATFPKEIQRMASDFLQDYIFLTVGRVGSSHTLITQTIEYVQSYNDKCQMLMDLVHAV 435

Query: 494 ---EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +   ++              IHG  +  ++E  + SF++G   +L+AT V
Sbjct: 436 QGLTLVFVETKRGADQLEDWLSQQGFPSTSIHGDRTQQEREWALKSFRSGKTPILVATDV 495

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +I  +        +H++ GR GR  +       +    S  +   + +
Sbjct: 496 AARGLDIPHVTHVINFDLPSDVDDYVHRI-GRTGRAGKKGLATAFFTDKDSSLARGLVEI 554

Query: 611 LKNTE 615
           L    
Sbjct: 555 LSEAN 559


>gi|167769539|ref|ZP_02441592.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM
           17241]
 gi|167668507|gb|EDS12637.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM
           17241]
          Length = 572

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 72/341 (21%), Positives = 129/341 (37%), Gaps = 40/341 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           T  Q  AI  ++Q          I +   G+GKT    I     +E+G    Q ++++P 
Sbjct: 28  TGIQAQAIPLLMQG------ADVIGRSSTGTGKTAAFGIPAVERIESGLKAPQVLVLSPT 81

Query: 331 GILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + ++K+ +    + V  + G  P   + +AL       A+I+IGT     D 
Sbjct: 82  RELAMQIADEMRKFAKYKPGVCVAAVYGGAPMDAQIRALRA-----ANIVIGTPGRVMDH 136

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           ++ + L        +L   DE    G    +           +L       +T++ ++  
Sbjct: 137 MRRHTLRLDDLRTVVLDEADEMLNMGFLDDI---------QTILAETPDTRQTVLFSATM 187

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---- 497
              I KIT+K     P    I    R    +E+    + + +K   +   ++        
Sbjct: 188 PPAILKITDKFL-HDPQTVDIRTGQRTIAAVEQFFYRVPQARKMDALNLLLQYHDPKRAV 246

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +++V+               IHG M    +  VM SF++G  ++L+AT V   GI
Sbjct: 247 VFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRDGKTRILVATDVAARGI 306

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           DV +   +   +        +H++ GR GR         L 
Sbjct: 307 DVENIEAVFNFDIPQEFEHYIHRI-GRTGRAGRTGMSHTLV 346


>gi|34498308|ref|NP_902523.1| ATP-dependent RNA helicase DbpA [Chromobacterium violaceum ATCC
           12472]
 gi|34104162|gb|AAQ60521.1| ATP-dependent RNA helicase dbpA [Chromobacterium violaceum ATCC
           12472]
          Length = 460

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 90/459 (19%), Positives = 176/459 (38%), Gaps = 58/459 (12%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ +   T  Q +++  IL+          I Q   GSGKT    + + +++     G
Sbjct: 19  LDSLGYHQMTAIQAASLPAILEGRD------LIAQAKTGSGKTAAFGLGLLSSINPRWFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA Q  + I++  +    I V  +TG  P   +  +LE      AHI++
Sbjct: 73  VQALVMCPTRELADQVAQEIRRLARAIDNIKVVTLTGGTPMGPQIGSLEH----GAHIVV 128

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT    QD +    L L  V     DE  R      ++         V ++ A P  R  
Sbjct: 129 GTPGRLQDHLFRETLNLTGVKTLVLDEADRMIDMGFIEEI-------VGIVRACPRTRQT 181

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK--KAYWICPQIE 493
           +L S    +  +       + P++  +  +++ D + +    V  E +      I   + 
Sbjct: 182 LLFSATYPEDIRKASAQFLKNPVEVKVESLHKADHIEQWFYKVKPETRLETVSRILRHLR 241

Query: 494 EKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                 F +  ER   L             +HG +   +++ ++  F N +  +L+AT V
Sbjct: 242 PTSALAFCNTRERCKELVRELQEQGFHALTLHGDLEQRERDQILLRFANKSATVLVATDV 301

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ +  ++I  +  H     +H++ GR GRGE+    + L     +K      + 
Sbjct: 302 AARGLDIKELDVVINVDVTHDPEVHIHRI-GRTGRGEQHGLALTLATDSEAKRLVQIENY 360

Query: 611 LKNTEDG--------------------FLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQ 648
            +                           IA    ++ + G++LG    ++G     I +
Sbjct: 361 QQAELTWADVEELTPAPGGPLLPPMVTLEIAGGKREKLRPGDLLGALTGEAGFAGSQIGK 420

Query: 649 PELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
             + +  S + + R  A+  L +      ++G+  ++ L
Sbjct: 421 INIFEFNSFVALDRAIAEDALAKLSR-GKIKGKQFKMRL 458


>gi|323354635|gb|EGA86470.1| Rrp3p [Saccharomyces cerevisiae VL3]
          Length = 501

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 132/348 (37%), Gaps = 33/348 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
            +N+ +S PT  Q  AI   L+          I     GSGKT    I +   +   +  
Sbjct: 96  CKNLNYSKPTPIQSKAIPPALEGHD------IIGLAQTGSGKTAAFAIPILNRLWHDQEP 149

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A I+AP   LAQQ  E          +    I G M    + + L R    + HIII 
Sbjct: 150 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR----KPHIIIA 205

Query: 382 THALFQDSIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           T     D ++        KL  +++DE  R      L +        +L +  T    T 
Sbjct: 206 TPGRLMDHLENTKGFSLRKLKFLVMDEADRL-----LDMEFGPVLDRILKIIPTQERTTY 260

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I K+ ++ +   P+K  +    +  + + +  +V+  G K  ++   + E 
Sbjct: 261 LFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEF 319

Query: 496 KESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      ++  ER + L      S   +HG ++   +   +D FK G   +L+AT 
Sbjct: 320 IGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATD 379

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   G+D+    I++  +      + +H++ GR  R       I L  
Sbjct: 380 VAARGLDIPSVDIVVNYDIPVDSKSYIHRV-GRTARAGRSGKSISLVS 426


>gi|312081503|ref|XP_003143055.1| ATP-dependent helicase DDX48 [Loa loa]
 gi|307761780|gb|EFO21014.1| ATP-dependent helicase DDX48 [Loa loa]
          Length = 399

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 133/343 (38%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    IA+  +++      QA+I++
Sbjct: 53  KPSAIQQRAIKQIVKGRDV------IAQAQSGTGKTATFSIAVLQSLDISLRETQALILS 106

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 107 PTRELAVQIQKVVLALGDYLNVQCHACIGGTNVGEDIRKLDYGQ----HVVSGTPGRVFD 162

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G +++L    +       V+L++AT     L +T
Sbjct: 163 MIRRRNLRTRSIKMLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMT 222

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + ++R +   + L          Y      +   
Sbjct: 223 SKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTL-------CDLYDTLTITQAVI 275

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+      +    +++ +HG M   +++++M  F+ G  +LLI+T V   G+D
Sbjct: 276 FCNTRRKVDWLAEKLKEANFTVSSMHGEMEQKERDAIMKEFRGGASRLLISTDVFARGLD 335

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +   S+++  +  +     +H++ GR GR       I      
Sbjct: 336 IPQVSLVVNYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSD 377


>gi|261339970|ref|ZP_05967828.1| ATP-independent RNA helicase DbpA [Enterobacter cancerogenus ATCC
           35316]
 gi|288317887|gb|EFC56825.1| ATP-independent RNA helicase DbpA [Enterobacter cancerogenus ATCC
           35316]
          Length = 457

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 79/452 (17%), Positives = 170/452 (37%), Gaps = 46/452 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL+    +      +Q   GSGKT    + +   ++AG   
Sbjct: 18  LNELGYLTMTPVQAAALPAILEGRDVR------VQAKTGSGKTAAFGLGLLQRIDAGLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  + +        R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-QTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +     P+   I  ++ +  + ++   V  +GK A       + K     
Sbjct: 187 WPEAIAAISGR-VQNAPLTIEIDTVDALPAIEQQFFEVSQKGKIALLQKVLSQHKPASCV 245

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G+
Sbjct: 246 VFCNTKKDCQSVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGL 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK--- 612
           D+    +++           +H++ GR  R       I    P  ++ +     +L+   
Sbjct: 306 DIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANILSEMLQLKL 364

Query: 613 ---NTEDGFLIAEEDLKQ------------RKEGEILG--IKQSGMPKFLIAQPELHDS- 654
              N      I   D +              + G++LG    + G+    I +  +H + 
Sbjct: 365 NWVNAPASVSIVPLDAEMATLCIDGGKKAKMRPGDVLGALTGEMGLDGADIGKIVVHPAH 424

Query: 655 -LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
             + + +  A     Q      ++G++ R+ L
Sbjct: 425 VYVAVRQSVAHKAWKQLQG-GKIKGKTCRVRL 455


>gi|160358662|sp|A6ZSX1|RRP3_YEAS7 RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
           Full=Ribosomal RNA-processing protein 3
 gi|151944009|gb|EDN62302.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
 gi|190405848|gb|EDV09115.1| weak RNA-dependent ATPase activity which is not specific for rRNA
           [Saccharomyces cerevisiae RM11-1a]
 gi|256270568|gb|EEU05749.1| Rrp3p [Saccharomyces cerevisiae JAY291]
 gi|323333235|gb|EGA74633.1| Rrp3p [Saccharomyces cerevisiae AWRI796]
          Length = 501

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 132/348 (37%), Gaps = 33/348 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
            +N+ +S PT  Q  AI   L+          I     GSGKT    I +   +   +  
Sbjct: 96  CKNLNYSKPTPIQSKAIPPALEGHD------IIGLAQTGSGKTAAFAIPILNRLWHDQEP 149

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A I+AP   LAQQ  E          +    I G M    + + L R    + HIII 
Sbjct: 150 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR----KPHIIIA 205

Query: 382 THALFQDSIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           T     D ++        KL  +++DE  R      L +        +L +  T    T 
Sbjct: 206 TPGRLMDHLENTKGFSLRKLKFLVMDEADRL-----LDMEFGPVLDRILKIIPTQERTTY 260

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I K+ ++ +   P+K  +    +  + + +  +V+  G K  ++   + E 
Sbjct: 261 LFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEF 319

Query: 496 KESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      ++  ER + L      S   +HG ++   +   +D FK G   +L+AT 
Sbjct: 320 IGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATD 379

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   G+D+    I++  +      + +H++ GR  R       I L  
Sbjct: 380 VAARGLDIPSVDIVVNYDIPVDSKSYIHRV-GRTARAGRSGKSISLVS 426


>gi|229085402|ref|ZP_04217643.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-44]
 gi|228697878|gb|EEL50622.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-44]
          Length = 433

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 139/370 (37%), Gaps = 40/370 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  ++           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 26  TPIQEQAIPVVMAGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 79

Query: 331 GILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    I+K   + + I V  I G    A + + L     G  HI++ T     D 
Sbjct: 80  RELALQITTEIEKMLVHKEDINVLAIYGGQDVAQQMRKL----KGNTHIVVATPGRLLDH 135

Query: 390 IQY--------YKLILVIVDEQHRFG--VQQRLKLTQKATAPHVLLMTATPIP--RTLVL 437
           ++           L+L   D+   FG        L +   +   +L +AT     + L  
Sbjct: 136 LRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQTMLFSATMPKDIKKLAK 195

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
             + + ++ +I  +      IK  +I     D   +     + +  + +        K  
Sbjct: 196 RYMKEPEMIRIQSEEVTVNNIKQRVIET--TDRAKQDALRHVMDRDQPFLAVIFCRTK-- 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              R   + ++ L  +   +   +HG +S   +E VM SF+    + LIAT V   G+DV
Sbjct: 252 ---RRASKLYDDLKGYGY-NCDELHGDLSQGKRERVMKSFREAKIQYLIATDVAARGLDV 307

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              + +   +      + +H++ GR GR       I    P    +       +     G
Sbjct: 308 EGVTHVFNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAPKDEMHLKEIEKGI-----G 361

Query: 618 FLIAEEDLKQ 627
             +  ++L+ 
Sbjct: 362 TTLQRQELEL 371


>gi|17507121|ref|NP_491703.1| hypothetical protein F33D11.10 [Caenorhabditis elegans]
 gi|2773184|gb|AAB96704.1| Hypothetical protein F33D11.10 [Caenorhabditis elegans]
          Length = 399

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 133/341 (39%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ A+  IL+          I Q   G+GKT    I++  +++      QA+I++
Sbjct: 48  KPSAIQQRAVPAILK------ARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILS 101

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 102 PTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQ----HVVSGTPGRVFD 157

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G +++L    +       V+L++AT     L +T
Sbjct: 158 MIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMT 217

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + ++R +   + L  +       Y      +   
Sbjct: 218 SKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDL-------YDTLTITQAVL 270

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+      +    +++ +HG M   D++ VM  F+ GT ++LI+T V   G+D
Sbjct: 271 FCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLD 330

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   S++I  +  +     +H++ GR GR       I    
Sbjct: 331 VPQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVK 370


>gi|296111234|ref|YP_003621616.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
 gi|295832766|gb|ADG40647.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
          Length = 532

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 66/341 (19%), Positives = 127/341 (37%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE  I   L           I Q   G+GKT    + +   ++      QA+I++P 
Sbjct: 25  TPIQEKTIPLTLSGRDV------IGQAQTGTGKTAAFGLPILEHIDLNNKNIQALIVSPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  + +KK  ++  + V+++ G      + + L+        I++GT     D I
Sbjct: 79  RELAIQTADELKKLGRDKHVDVQVVFGGSDIRRQIQNLKS----HPQILVGTPGRLLDHI 134

Query: 391 QYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTLVLT 438
                       L+L   DE    G  + +   +         LL +AT  P  + + + 
Sbjct: 135 NRKTVKIDNVKTLVLDEADEMLNMGFLEDIESIIKNTPADRQTLLFSATMPPAIKRIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  +I  K      +    + +   ++     ++   +  K   +  +       
Sbjct: 195 FMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIFDVQAPKLAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  VE  +   E      A +HG ++   +  V+  FK+    +L+AT V   G+DV 
Sbjct: 249 --KRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILVATDVAARGLDVK 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           D S +   +      + +H++ GR GR       + L  P 
Sbjct: 307 DVSHVYNFDIPQDPESYVHRI-GRTGRAGAKGVSVTLVAPN 346


>gi|317132017|ref|YP_004091331.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315469996|gb|ADU26600.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 530

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 69/341 (20%), Positives = 130/341 (38%), Gaps = 31/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P++ Q  AI  IL+          I Q   G+GKTL     + + +E G    QA+I+ 
Sbjct: 26  EPSQIQTQAIPVILEG------NDVIGQAQTGTGKTLAYSAPVISLMEHGPHQVQALILV 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + + +  + T      + G  P   + +AL++       I++ T     D
Sbjct: 80  PTRELAIQVNDELVRINRFTHFTSIPVYGGQPIDRQIRALQK----GVDIVVATPGRILD 135

Query: 389 SIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
            I+     +  +   ++DE         +   Q       +L T     ++L+ ++   +
Sbjct: 136 HIRRGTVDFSHVRFFVLDESDEMLNMGFIDDIQA------VLDTLPAERQSLLFSATMPM 189

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI---EEKKESNF 500
            I K+ ++         VI        + E+    +    +   +C  +   E +    F
Sbjct: 190 QIRKLAQQHMKPDVKNIVIAKSTLTATLTEQFYFEVKHRDRFETLCRILDVDEPESAIIF 249

Query: 501 RSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                  + L E+  S    +  +HG M    +++ +  F++G    L+AT V   GID+
Sbjct: 250 CRTKRGVDELVENMQSRGYIVEGMHGDMGQNQRQNTLKKFRDGNLDFLVATDVAARGIDI 309

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            + S +I         + +H++ GR GR         L  P
Sbjct: 310 ENISHVINYELPEDAESYVHRI-GRTGRANRTGIAYSLVTP 349


>gi|260776311|ref|ZP_05885206.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607534|gb|EEX33799.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 483

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 147/381 (38%), Gaps = 41/381 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
            P+  QE AI  +L           +     G+GKT    + +   ++ G +       A
Sbjct: 23  KPSPIQEQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILERLDNGTRVKGNHVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E + KY++  ++   ++ G +    +   L +       +++ T  
Sbjct: 77  LVLTPTRELAAQVQENVFKYSRYQRLTSNVVFGGVKINPQMTKLRK----GTDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     +I + +L ++++DE  R      ++  +K      +L       + L+ ++
Sbjct: 133 RLLDLYQQNAINFSQLEVLVLDEADRMLDMGFIRDIRK------ILALLPEKRQNLLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I ++  K     P++  + P N     IE+      + KKA  +   I++     
Sbjct: 187 TFSAEIRELA-KGLVNDPVEVSVNPENSTAVTIEQSIYPADKRKKAPMLVKLIKDGDWRQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R +        + A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFSRTKHGANRLSHYLNDQGITAAPIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++     H     +H++ GR GR  E+   I L     +   +    +++ 
Sbjct: 306 GIDIPQLPQVVNFELPHVAEDYVHRI-GRTGRAGEVGKAISLVEAAEASELFGIERLIQQ 364

Query: 614 TEDGFLIAEEDLKQRKEGEIL 634
                ++   +L+  K   +L
Sbjct: 365 -----VLPRLELEGYKPVNVL 380


>gi|294909743|ref|XP_002777840.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885802|gb|EER09635.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 625

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 74/410 (18%), Positives = 146/410 (35%), Gaps = 55/410 (13%)

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIP------------FSPTKSQESAIKDILQDMS 289
           L+R++   EI   ++V   I       +P             +PT  Q       L    
Sbjct: 157 LVRRKLDIEIIHGVDVPNPITHFEEACLPDYIMVEIQKAGFVNPTPIQVQGWPVALCG-- 214

Query: 290 QKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFI 341
               M+ I   + GSGKTL  L+     + A        G   +++AP   LA Q  E  
Sbjct: 215 --RDMVGI--AETGSGKTLAFLLPAVVHINAQPYLQKGDGPIVLVLAPTRELALQIKEEC 270

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLI 396
            ++  +++I      G +P+  + + L+        I I T     D ++       ++ 
Sbjct: 271 DRFGSSSRISNTCCYGGVPRGPQARMLQN----GVEICIATPGRLIDFLESEVTNLRRVT 326

Query: 397 LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456
            +++DE  R                  ++    P  +TL+ ++    D+ ++       +
Sbjct: 327 YLVLDEADRMLDMGFE------PQVRKIVSQIRPDRQTLMWSATWPKDVQQLARDLCNEE 380

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE----------EKKE---SNFRSV 503
           P+   +         I++   V+ E  KA  +   +           E K    ++ +  
Sbjct: 381 PVHVTVGRSGHACHNIQQFVEVVEENGKAERLQALMRAVASASGGVWESKALIFTDTKRC 440

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +    +          IHG     +++ V+  FK G   ++IAT V   G+DV D   +
Sbjct: 441 ADDITRVLRRDGWPALAIHGDKKQTERDWVLAEFKTGRMPIMIATDVASRGLDVKDVKYV 500

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           I  +        +H++ GR GR     +    +    +K +   + +L+ 
Sbjct: 501 INYDFPGTIEDYVHRI-GRTGRAGAHGTAYSFFTADKAKLAKPLIGILRE 549


>gi|229190613|ref|ZP_04317610.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876]
 gi|228592958|gb|EEK50780.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876]
          Length = 458

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PDSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     +I  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFIMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|145345795|ref|XP_001417385.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577612|gb|ABO95678.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 480

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 128/366 (34%), Gaps = 36/366 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA-AVEAGGQ-------- 323
           PT  Q+ AI   L           +     GSGKT      + A  ++ G Q        
Sbjct: 73  PTPVQKYAIPASLAGRD------LMACAQTGSGKTAAFCFPIIAGILKRGLQGGHMNRKT 126

Query: 324 ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              A++++P   LA Q +E  +K+   T +   +I G  P   + +A+ER       I++
Sbjct: 127 YPLALVLSPTRELASQIHEESRKFAYQTGVASCVIYGGAPAVEQFRAMER----GCDILV 182

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D I   K+ L       +DE  R          Q         M      +T+
Sbjct: 183 ATPGRLIDLIDRAKISLSRVQYLALDEADRMLDMGFEP--QIRQIVDERDMPRCGERQTM 240

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE-- 493
           + ++    +I ++           TV    +    + + ++ V S  +K+  +   +E  
Sbjct: 241 LFSATFPREIQRMASDFLDDYVFLTVGRVGSSHALITQSVERVTSYHEKSNMLLDLVEAV 300

Query: 494 ---EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +   ++              IHG  +  ++E+ + SF+ G   +L+AT V
Sbjct: 301 PGLTLVFVETKRGADQLEDFLYQNGKPATSIHGDRTQQEREAALKSFRAGKTPILVATDV 360

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC-ILLYHPPLSKNSYTRLS 609
              G+D+   + +I  +         H++ GR GR  +      L       + +     
Sbjct: 361 AARGLDIPHVTHVINFDLPSDIDDYTHRI-GRTGRAGKKGRATALFLESKDGQMARPLTE 419

Query: 610 VLKNTE 615
           ++    
Sbjct: 420 LMSEAN 425


>gi|322794838|gb|EFZ17785.1| hypothetical protein SINV_13785 [Solenopsis invicta]
          Length = 586

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 67/389 (17%), Positives = 138/389 (35%), Gaps = 49/389 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQ------- 323
            PT  Q+ AI  I++      R   +     GSGKT   L+ +   + E+G +       
Sbjct: 191 KPTPVQKYAIPIIIE------RRDVMACAQTGSGKTAAFLVPILNQIYESGPRPPPPQAN 244

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                      +++AP   LA Q Y+  +K+   +++   ++ G      + + L+R   
Sbjct: 245 SSSRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGSNIVDQMRELDR--- 301

Query: 374 GQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+++ T     D +   K+ L     +++DE  R          Q         M  
Sbjct: 302 -GCHLLVATPGRLVDMLGRGKIGLHNCRFLVLDEADRMLDMGFEP--QIRRIVQEDNMPP 358

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++    +I  +  +      I   +  +    E I +  V + E  K  ++
Sbjct: 359 TGERQTLMFSATFPKEIQMLA-RDFLSNYIFLAVGRVGSTSENITQKIVWVEEHDKRSYL 417

Query: 489 CPQIEEKKESNF------------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              ++    S+             +   +            +  IHG  +  ++E  +  
Sbjct: 418 LDLLQASNFSDPTAESLTLVFVETKKGADMLEEYLASMGYPVTSIHGDRTQREREDALRR 477

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G   +L+AT V   G+D+     +I  +        +H++ GR GR   +      +
Sbjct: 478 FRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRI-GRTGRMGNLGLATSFF 536

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           +          +S+L           +D+
Sbjct: 537 NHKNHNLVRDLVSLLIEANQELPSWLDDM 565


>gi|229094565|ref|ZP_04225632.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-42]
 gi|228688812|gb|EEL42643.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-42]
          Length = 481

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 142/378 (37%), Gaps = 40/378 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  ++ L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   
Sbjct: 12  SKEVRRALTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+++ P   LA Q  E I    +  +I    I G  P A ++  L++    
Sbjct: 66  VEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ---- 121

Query: 375 QAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
           + HI++GT     D I+           L++   DE    G   ++   + +  T    +
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT       L+       + I  K AG     I+  +  +   +++     V   E 
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIEN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I  + +E  +  +R                   IHG M   D+  VMD F+ G  
Sbjct: 242 PDSCIIFCRTQENVDHVYRQ--------LNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKF 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + L+AT V   GID+ + + +I  +      + +H+  GR GR       I    P   +
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYEDR 352

Query: 603 NSYTRLSVLKNTEDGFLI 620
                 + +     GF I
Sbjct: 353 FLEEIEAYI-----GFAI 365


>gi|167032455|ref|YP_001667686.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166858943|gb|ABY97350.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 560

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 144/372 (38%), Gaps = 44/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ +I  IL           I Q   G+GKT    + +   ++      QA+I+A
Sbjct: 28  EPSAIQQQSIPIILAGHD------MIGQAQTGTGKTAAFALPILNKIDVSKREPQALILA 81

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y  Q   + V  + G  P   + +A+       A I++ T     
Sbjct: 82  PTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRN----GAQIVVATPGRLC 137

Query: 388 DSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++  +        L+L   DE  + G    L++   A              +T++ ++
Sbjct: 138 DHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPA---------TRQTVLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I  I E+   R+P    I    +    IE+  +++   +K   +   +E ++   
Sbjct: 189 TLPSSIRSIAERHL-REPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLEVEEFDA 247

Query: 500 FRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             + V          +  E      A ++G ++   +E V+DS K+G   +++AT V   
Sbjct: 248 LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV   + +   +  +   + +H++ GR GR       +LL  P         L V++ 
Sbjct: 308 GLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGRDGRALLLVTPRE----RRMLQVIER 362

Query: 614 TEDGFLIAEEDL 625
              G  +AE  L
Sbjct: 363 VT-GQKVAEARL 373


>gi|148262453|ref|YP_001229159.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146395953|gb|ABQ24586.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 453

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 63/340 (18%), Positives = 129/340 (37%), Gaps = 27/340 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +PT  QE AI   L           I     G+GKT    +     +         G + 
Sbjct: 23  TPTPIQEQAIPLALAGKD------LIASAQTGTGKTAAFTLPALQRLSTPSPINGKGPRI 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  + ++ Y +  ++    I G MP   + + L +       +I+ T  
Sbjct: 77  LVLTPTRELANQVTDAVRNYGKFMRVRSGAILGGMPYREQLQLLSQP----VDLIVATPG 132

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D ++  ++ L  + E        R+     +     +   A    +TL+ T+  D  
Sbjct: 133 RLIDHLERGRINLSRL-ELLILDEADRMLDMGFSDDVDKIAAAAPANRQTLLFTATMDDV 191

Query: 445 ISKITEKPAGRKPIKTVII----PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           ++K+ ++   + P++  I       ++I++ +  +  +  + +    +       K   F
Sbjct: 192 MAKLAQR-LLKDPVRIEIAGQKTSHDQIEQRLHVVDNLQHKNRMLQHLIADGNLTKAIIF 250

Query: 501 RSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +     + L     +   + A +HG M+   +   + + + G  +LL+AT V   G+DV
Sbjct: 251 SATKRDADMLARELHAQGHAAAALHGDMTQNARNKTITNMRRGKVRLLVATDVAARGLDV 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
              S +I  +   F    +H++ GR GR       I    
Sbjct: 311 TGISHVINFDLPKFAEDYVHRI-GRTGRAGASGIAISFVS 349


>gi|87124726|ref|ZP_01080574.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
 gi|86167605|gb|EAQ68864.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
          Length = 603

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 132/343 (38%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +P+  Q +A  +++           + Q   G+GKT    + +   ++    G Q +++A
Sbjct: 65  APSPIQRAAFPELMLGRD------LVGQAQTGTGKTAAFALPLLERLQPEGPGPQVLVLA 118

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  K Y   +  + V  I G      +  +L+R       +++GT     
Sbjct: 119 PTRELAMQVAESFKAYAAGHPHLNVLAIYGGSDFRSQIHSLKR----GVDVVVGTPGRVM 174

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPI--PRTL 435
           D ++           L+L   DE  R G    ++    Q      V+L +AT     R L
Sbjct: 175 DHMRQGTLNTSHLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVVLFSATMPAEIRRL 234

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L +     I  +    + I+   I +    ++    +V+ +   +   I  +    
Sbjct: 235 SKRYLREPAEITIKTQEKEARRIRQRCITLQNSHKLEALNRVLEAVTGEGVIIFART--- 291

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +++    +   E     +A+++G +    +E  ++  + GT  +L+AT V   G+
Sbjct: 292 -----KAITLTVSENLEATGHDVAVLNGDVPQNQRERTVERLRKGTVNILVATDVAARGL 346

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV    ++I  +      A +H++ GR GR       IL   P
Sbjct: 347 DVERIGLVINYDMPFDSEAYVHRI-GRTGRAGRSGEAILFVTP 388


>gi|302753758|ref|XP_002960303.1| hypothetical protein SELMODRAFT_75384 [Selaginella moellendorffii]
 gi|302767980|ref|XP_002967410.1| hypothetical protein SELMODRAFT_168957 [Selaginella moellendorffii]
 gi|300165401|gb|EFJ32009.1| hypothetical protein SELMODRAFT_168957 [Selaginella moellendorffii]
 gi|300171242|gb|EFJ37842.1| hypothetical protein SELMODRAFT_75384 [Selaginella moellendorffii]
          Length = 575

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 92/511 (18%), Positives = 166/511 (32%), Gaps = 66/511 (12%)

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDF---EWTSPARERLAYDELLAGQIALLLM 243
           E         +  P   EA      P +       +  +  R RL  D  +         
Sbjct: 68  EKWPFPSRDTRGLPP-PEAVWSRWQPSERVRRMQSDQIADVRARLNVDVEITDGTPAAQA 126

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
             +  +++ +  N+   IA     N    PT  Q  A+   L           +   + G
Sbjct: 127 PVETFEDMCLHANIMKDIAFHEYTN----PTPIQAQAMPVALSGRD------LLGCAETG 176

Query: 304 SGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEI 354
           SGKT    I M     A        G  A+++AP   LAQQ  + ++ ++++T      I
Sbjct: 177 SGKTAAFAIPMIQHCLAQPPIRHGDGPLALVLAPTRELAQQIEKEVRAFSRSTDGFKTAI 236

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRF 406
           + G      +R  L         +++ T   F D +Q           ++L   D     
Sbjct: 237 VVGGTHIGEQRSELRS----GVQVVVATPGRFIDHLQQGNSSLLRVSYVVLDEADRMLDM 292

Query: 407 GV--QQRLKLTQKATAPHVLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVI 462
           G   Q +  +         LL +AT       L    L      K+ +  +    +   +
Sbjct: 293 GFLPQIKEVMQNLPKKHQTLLFSATMPEEIEALAQEYLTKPVQVKVGKVSSPTSNVLQSL 352

Query: 463 IPINRIDEV-------IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
             ++  D++       +E        G+        +E K   +  +       L     
Sbjct: 353 EKVDEKDKIDYLLAMLVESSNQSERAGQPPPLTIVFVERKARCDDVADALLAQGL----- 407

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
              A +HG  +  ++E+ +  F+ G   +L+AT V   G+DV   + ++  +        
Sbjct: 408 -KAAALHGGRTQGEREAALRDFRKGAISILVATDVASRGLDVTGVAHVVNLDLPKVMEDY 466

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA-----------EED 624
           +H++ GR GR         LY    +         +   E G ++A            E+
Sbjct: 467 VHRI-GRTGRAGASGRATSLYTDRDAFLVAQIRKAIAEAEAGNVMAFATGKAARRKEREE 525

Query: 625 LKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
               KEG + G   SG+  F      + D  
Sbjct: 526 AAAFKEGRLTGT--SGVGTFGSTTVRVDDKY 554


>gi|255716462|ref|XP_002554512.1| KLTH0F07106p [Lachancea thermotolerans]
 gi|238935895|emb|CAR24075.1| KLTH0F07106p [Lachancea thermotolerans]
          Length = 525

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 76/348 (21%), Positives = 132/348 (37%), Gaps = 33/348 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
             N+ +S PT  Q  AI   L+          I     GSGKT    I +   +    Q 
Sbjct: 120 CENLKYSKPTPIQAEAIPPALEGKD------IIGLAQTGSGKTAAFAIPILNQLWHDQQP 173

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A ++AP   LAQQ  E          +    I G M    + + L R    + HIII 
Sbjct: 174 YYACVLAPTRELAQQIKETFDSLGGAMGVRTTCIVGGMNMIDQARDLMR----KPHIIIA 229

Query: 382 THALFQDSIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           T     D ++        KL  +++DE  R      L +        +L +  T    T 
Sbjct: 230 TPGRLMDHLENTKGFSMRKLKFLVMDEADRL-----LDMEFGPVLDRILKIIPTQGRTTY 284

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE- 494
           + ++     I K+ ++ +   P+K  +    +  + + +  +V+  G K  ++   + E 
Sbjct: 285 LFSATMTSKIDKL-QRASLTNPVKCAVSTKYQTVDTLIQTLMVVPGGLKNTFLIYLLNEF 343

Query: 495 -----KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   +  ++  ER  +L      S   +HG ++   +   +D FK G   +L+AT 
Sbjct: 344 LGKTAIVFTRTKANAERIATLCNLLEFSATALHGDLNQNQRTGALDLFKAGRRSILVATD 403

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   G+D+    I+I  +      + +H++ GR  R       I L  
Sbjct: 404 VAARGLDIPSVDIVINYDIPVDSKSYIHRV-GRTARAGRSGKSISLVS 450


>gi|110680443|ref|YP_683450.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh
           114]
 gi|109456559|gb|ABG32764.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh
           114]
          Length = 505

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 150/397 (37%), Gaps = 46/397 (11%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            + +        +N+  K+ + I      +PT  Q  AI   L           +     
Sbjct: 15  RKLRIHMIKFSELNLNPKVLKAIDEAGYETPTPIQAGAIPPALAGRDV------LGIAQT 68

Query: 303 GSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           G+GKT    + M   +  G       +++++ P   LA Q  E    YT++ ++   ++ 
Sbjct: 69  GTGKTASFTLPMITLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLI 128

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQR 411
           G +    + K +++       ++I T     D  +  KL+L     ++VDE  R      
Sbjct: 129 GGVSFKEQDKLIDK----GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGF 184

Query: 412 LKLTQKATAPHVLLMTATPI-PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +   ++       + + TP   +TL  ++    +I +IT       P +  +       E
Sbjct: 185 IPDIER-------IFSLTPFTRQTLFFSATMAPEIERITNTFL-SAPERIEVARQATTSE 236

Query: 471 VIERLKVVL------SEGKKAYWICPQIEEKK---------ESNFRSVVERFNSLHEHFT 515
            IE+  ++        EG +   +   + + +           N ++ V+      + + 
Sbjct: 237 TIEQGVLMFKASRKDREGTEKRKVLRALIDAEGEKCTNAIVFCNRKTDVDIVAKSLKKYN 296

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
              A IHG +    +   +D F++G+ K LIA+ V   G+DV   S +   +        
Sbjct: 297 YDAAPIHGDLDQSQRTRTLDGFRDGSLKFLIASDVAARGLDVPAVSHVFNFDVPGHAEDY 356

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +H++ GR GR       I++  P   +N      +++
Sbjct: 357 VHRI-GRTGRAGRDGKAIMICVPRDERNLEDIERLVQ 392


>gi|300118846|ref|ZP_07056566.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           cereus SJ1]
 gi|298723814|gb|EFI64536.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           cereus SJ1]
          Length = 481

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 143/378 (37%), Gaps = 40/378 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  ++ L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   
Sbjct: 12  SKEVRRALTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+++ P   LA Q  E I    +  +I    I G  P A ++  L++    
Sbjct: 66  VEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ---- 121

Query: 375 QAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
           + HI++GT     D I+           L++   DE    G   ++   + +  T    +
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT       L+       + I  K AG     I+  +  +   +++     V   E 
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIEN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I  + +E  +  +R          +        IHG M   D+  VMD F+ G  
Sbjct: 242 PDSCIIFCRTQENVDHVYRQ--------LDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKF 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + L+AT V   GID+ + + +I  +      + +H+  GR GR       I    P   +
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYEDR 352

Query: 603 NSYTRLSVLKNTEDGFLI 620
                 + +     GF I
Sbjct: 353 FLEEIEAYI-----GFAI 365


>gi|119500728|ref|XP_001267121.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
 gi|143359899|sp|A1CX72|PRP28_NEOFI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|119415286|gb|EAW25224.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
          Length = 796

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 140/382 (36%), Gaps = 50/382 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q +AI   LQ          I     GSGKT   L+ +   +             
Sbjct: 386 EPTPIQRAAIPIALQSRD------LIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRK 439

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G  A+++AP   LAQQ     +K+TQ     V  I G      +  +L       A I
Sbjct: 440 NDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRN----GAEI 495

Query: 379 IIGTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLTQKA-----------T 419
           II T     D I+   L+L           D     G ++ +     A            
Sbjct: 496 IIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEE 555

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A +   M +    +T++ T+     + +I  K   R  I T+      +D V +R++++ 
Sbjct: 556 AENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEMIA 615

Query: 480 SEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
            E K+   +   +   +         N +   +      +    S   +HG  +   +E+
Sbjct: 616 GEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKQMGFSSVTLHGSKTQEQREA 675

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            + S +NG+  +L+AT +   GIDV D S+++  N  +   +  H++ GR GR  +    
Sbjct: 676 ALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRI-GRTGRAGKSGVA 734

Query: 593 ILLYHPPLSKNSYTRLSVLKNT 614
           I       +   Y    +L  +
Sbjct: 735 ITFLGNEDADVMYDLKQMLMKS 756


>gi|116872678|ref|YP_849459.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741556|emb|CAK20680.1| ATP-dependent RNA helicase DbpA family [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 470

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 80/367 (21%), Positives = 134/367 (36%), Gaps = 38/367 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
               +K +  + ++  T  Q++ I   L           + +   GSGKT    I +A  
Sbjct: 7   SDEIKKAITELGYNEATPVQKAVIPIALTGED------IVAKSQTGSGKTAAFAIPIAEQ 60

Query: 318 V---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           V   E   QA+I+ P   LA Q         +  +I    I G  P A ++  L +    
Sbjct: 61  VVWEENKPQALIIVPTRELAMQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKN-- 118

Query: 375 QAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
             HI++GT     D I+           L+L  VDE    G   ++   L++       L
Sbjct: 119 --HIVVGTPGRLLDHIEKGTLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKKRQNL 176

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             +AT       L      +   I        PI  V +  +  ++ ++   V+++E   
Sbjct: 177 FFSATMPEEMQDLIKRYQDNPMVIEMASEKTNPIFHVEMQTDTKEKTLKD--VLITENPD 234

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +  I    + +            + L E      + IHG +   D+   MD FK+G  + 
Sbjct: 235 SAIIFCNTKNQ-----------VDELSEMLDLRTSKIHGGLRQEDRFQAMDEFKSGKSRF 283

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   GIDV + S++I  +        +H++ GR GR       I       +   
Sbjct: 284 LIATDVAGRGIDVENVSLVINYDLPIEKENYVHRI-GRTGRAGNSGKAISFVKTQENPLL 342

Query: 605 YTRLSVL 611
                +L
Sbjct: 343 RDIEEML 349


>gi|115486155|ref|NP_001068221.1| Os11g0599500 [Oryza sativa Japonica Group]
 gi|122206897|sp|Q2R1M8|RH52C_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52C
 gi|77551918|gb|ABA94715.1| DEAD-box protein 3, X-chromosomal, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113645443|dbj|BAF28584.1| Os11g0599500 [Oryza sativa Japonica Group]
          Length = 623

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 132/376 (35%), Gaps = 47/376 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q  AI   L           +     GSGKT      + + +  G  A        
Sbjct: 178 PTPVQRYAIPISLAGRD------LMACAQTGSGKTAAFCFPIISGIMRGPPAQRPQRGGM 231

Query: 325 -------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                  +I++P   L+ Q +E  +K++  T + V +  G  P   + + LER       
Sbjct: 232 RTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLER----GVD 287

Query: 378 IIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I++ T     D ++  ++ L  +     DE  R          Q       + M      
Sbjct: 288 ILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEP--QVRRIVEQMDMPPPGAR 345

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +T++ ++    +I ++         I   +  +    ++I +    + E  K   +   +
Sbjct: 346 QTMLFSATFPKEIQRMASDFLE-NYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHLMDLL 404

Query: 493 EEKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +++                +   +               IHG  +  ++E  + SFK+
Sbjct: 405 HAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALRSFKS 464

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+   + ++  +  +     +H++ GR GR  +       ++  
Sbjct: 465 GHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI-GRTGRAGKSGLATAFFNEN 523

Query: 600 LSKNSYTRLSVLKNTE 615
            S  + +   +++ + 
Sbjct: 524 NSSMARSLAELMQESN 539


>gi|30265472|ref|NP_847849.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47531039|ref|YP_022388.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188291|ref|YP_031544.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|65317435|ref|ZP_00390394.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|165872531|ref|ZP_02217164.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167636244|ref|ZP_02394547.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167641411|ref|ZP_02399661.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170689199|ref|ZP_02880396.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|170708677|ref|ZP_02899116.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177651890|ref|ZP_02934473.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190568924|ref|ZP_03021826.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|218906634|ref|YP_002454468.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|228930460|ref|ZP_04093460.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228949176|ref|ZP_04111444.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229124957|ref|ZP_04254131.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 95/8201]
 gi|229600530|ref|YP_002869663.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254687105|ref|ZP_05150963.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254724112|ref|ZP_05185897.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. A1055]
 gi|254733618|ref|ZP_05191335.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254742162|ref|ZP_05199849.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Kruger B]
 gi|254755928|ref|ZP_05207960.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Vollum]
 gi|254761640|ref|ZP_05213660.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Australia 94]
 gi|30260150|gb|AAP29335.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47506187|gb|AAT34863.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49182218|gb|AAT57594.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|164711754|gb|EDR17298.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167510586|gb|EDR85982.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167528359|gb|EDR91130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170126459|gb|EDS95347.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|170666842|gb|EDT17608.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|172082594|gb|EDT67658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190559991|gb|EDV13974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|218536757|gb|ACK89155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|228658458|gb|EEL14124.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 95/8201]
 gi|228810459|gb|EEM56812.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228829179|gb|EEM74816.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229264938|gb|ACQ46575.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
          Length = 481

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 143/378 (37%), Gaps = 40/378 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  ++ L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   
Sbjct: 12  SKEVRRALTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+++ P   LA Q  E I    +  +I    I G  P A ++  L++    
Sbjct: 66  VEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ---- 121

Query: 375 QAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
           + HI++GT     D I+           L++   DE    G   ++   + +  T    +
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT       L+       + I  K AG     I+  +  +   +++     V   E 
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIEN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I  + +E  +  +R          +        IHG M   D+  VMD F+ G  
Sbjct: 242 PDSCIIFCRTQENVDHVYRQ--------LDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKF 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + L+AT V   GID+ + + +I  +      + +H+  GR GR       I    P   +
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYEDR 352

Query: 603 NSYTRLSVLKNTEDGFLI 620
                 + +     GF I
Sbjct: 353 FLEEIEAYI-----GFAI 365


>gi|208779079|ref|ZP_03246425.1| conserved hypothetical protein [Francisella novicida FTG]
 gi|254374120|ref|ZP_04989602.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548]
 gi|151571840|gb|EDN37494.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548]
 gi|208744879|gb|EDZ91177.1| conserved hypothetical protein [Francisella novicida FTG]
          Length = 569

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 150/381 (39%), Gaps = 43/381 (11%)

Query: 269 IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM-----AAAVEAGG 322
           + +  PT  Q+ AI  IL           + Q   G+GKT    + +      A+ +   
Sbjct: 25  LGYENPTPIQQYAIPYILSGRDV------LGQAQTGTGKTAAFALPLINNMDLASRDRAP 78

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E  + + +N   + V  I G      + +AL++       +++G
Sbjct: 79  QVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQ----GVKVVVG 134

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I+           L+L   DE  R G    +K          +L   +   +
Sbjct: 135 TTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKF---------VLSHVSDECQ 185

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ I E+   R P K  +    +    + +  +V+   +K   +   +E
Sbjct: 186 RLLFSATIPTDIADIIEEYL-RNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLE 244

Query: 494 EKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            ++          ++         +     +A I+G M    +E ++D F++    +L+A
Sbjct: 245 TEETDGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVA 304

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V+  GID+   S +I  +  +     +H++ GR GR     + I L      +   T 
Sbjct: 305 TDVVARGIDLERISHVINYDMPNDTDTYVHRI-GRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 608 LSVLKN-TEDGFLIAEEDLKQ 627
                +  ++ F+ + +DL Q
Sbjct: 364 ERFTGSPMQEVFMPSAKDLAQ 384


>gi|118497286|ref|YP_898336.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. novicida U112]
 gi|194323589|ref|ZP_03057366.1| conserved hypothetical protein, putative [Francisella tularensis
           subsp. novicida FTE]
 gi|118423192|gb|ABK89582.1| DEAD-box subfamily ATP-dependent helicase [Francisella novicida
           U112]
 gi|194322444|gb|EDX19925.1| conserved hypothetical protein, putative [Francisella tularensis
           subsp. novicida FTE]
          Length = 569

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 150/381 (39%), Gaps = 43/381 (11%)

Query: 269 IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM-----AAAVEAGG 322
           + +  PT  Q+ AI  IL           + Q   G+GKT    + +      A+ +   
Sbjct: 25  LGYENPTPIQQYAIPYILSGRDV------LGQAQTGTGKTAAFALPLINNMDLASRDRAP 78

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E  + + +N   + V  I G      + +AL++       +++G
Sbjct: 79  QVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQ----GVKVVVG 134

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I+           L+L   DE  R G    +K          +L   +   +
Sbjct: 135 TTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKF---------VLSHVSDECQ 185

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ I E+   R P K  +    +    + +  +V+   +K   +   +E
Sbjct: 186 RLLFSATIPTDIADIIEEYL-RNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLE 244

Query: 494 EKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            ++          ++         +     +A I+G M    +E ++D F++    +L+A
Sbjct: 245 TEETDGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVA 304

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V+  GID+   S +I  +  +     +H++ GR GR     + I L      +   T 
Sbjct: 305 TDVVARGIDLERISHVINYDMPNDTDTYVHRI-GRTGRAGREGTSISLVPLKEMRFLRTL 363

Query: 608 LSVLKN-TEDGFLIAEEDLKQ 627
                +  ++ F+ + +DL Q
Sbjct: 364 ERFTGSPMQEVFMPSAKDLAQ 384


>gi|312069559|ref|XP_003137738.1| hypothetical protein LOAG_02152 [Loa loa]
 gi|307767094|gb|EFO26328.1| hypothetical protein LOAG_02152 [Loa loa]
          Length = 415

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 137/366 (37%), Gaps = 35/366 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           +    F  P+  Q+ AI      +    +   I Q   G+GKT    +A+   ++     
Sbjct: 57  IYAFGFEKPSAIQQRAI------IPCTKKRDVIAQAQSGTGKTATFSVAVLQNIDETIPE 110

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA++MAP   LAQQ  + +    +   +      G       ++ LE       H+++G
Sbjct: 111 VQALVMAPTRELAQQIQKVMLSLGEYLGVKCHASIGGTNVRDDQRKLES----GVHVVVG 166

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPI 431
           T     D I    L        +L   DE    G ++++            V+L++AT  
Sbjct: 167 TPGRVNDMITRQSLQTNNIKMFVLDEADEMLSRGFKEQIYDVFKCMPNDVQVVLLSATMP 226

Query: 432 PRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              L +T+    D  +I  K      + I+   I + + +   E L          Y   
Sbjct: 227 SEVLEVTNRFMNDPIRILVKREELTLEGIRQFYINVEKEEWKFETL-------CDLYSTV 279

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
              +     N R  V+   +       +++ +HG M   +++ +M  F++G+ ++LI T 
Sbjct: 280 NVTQAVIFCNTRRKVDYLATQMSKEKYTVSCMHGEMEQSERDVIMREFRSGSSRVLITTD 339

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           ++  GIDV   S++I  +        +H++ GR GR       I              + 
Sbjct: 340 LLARGIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFIT-EADMRMMKDIE 397

Query: 610 VLKNTE 615
              NT+
Sbjct: 398 SFYNTQ 403


>gi|217977138|ref|YP_002361285.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
 gi|217502514|gb|ACK49923.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
          Length = 494

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 129/359 (35%), Gaps = 27/359 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L           +     G+GKT    + M + +E G       + +
Sbjct: 23  TPTPIQAQAIPFALTGRDV------LGIAQTGTGKTAAFTLPMLSRLEQGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   +Y  N ++ V ++ G +  A +   + R     A ++I T   
Sbjct: 77  ILEPTRELAAQVEESFVRYGVNHKVNVALLIGGVSFADQEAKITR----GADVLIATPGR 132

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D  +  KL+L  + E        R+           +        +TL  ++    +I
Sbjct: 133 LLDFAERGKLLLTGI-EILVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFSATMPPEI 191

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-------- 497
           +++TE      P +  +   +     I +  +  + G        ++             
Sbjct: 192 TRLTETFL-HNPARVEVARASSTATTITQGLIASAPGPAKRETLRRLLRSAADFKNAIIF 250

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N +  V   +        +   +HG +    + + +D+FK G   L++ + V   G+D+
Sbjct: 251 CNRKRDVALLHKSLLTHGFNAGALHGDLDQRARMASLDAFKTGEVALIVCSDVAARGLDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
            D S ++  +        +H++ GR GR  +    I +      K+      ++  + D
Sbjct: 311 PDVSHVLNFDVPTHAEDYVHRI-GRTGRAGKSGVAITIVTKADQKHIAEIEKLIGRSID 368


>gi|210623578|ref|ZP_03293904.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
 gi|210153448|gb|EEA84454.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
          Length = 538

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 132/363 (36%), Gaps = 42/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q  +I  IL+          I Q   G+GKT    I +   ++      QA+++ 
Sbjct: 26  EPSPIQAKSIPVILEGKDV------IGQAQTGTGKTAAFSIPILEKIDPNDRSLQAIVLC 79

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+K  +    I    I G  P   + KAL     G   +IIGT     
Sbjct: 80  PTRELAIQVSQEIRKLAKYMQGIKTLPIYGGQPIDRQIKAL----KGGVQVIIGTPGRTI 135

Query: 388 DSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D I+           ++L   DE    G ++ +           +L       +T   ++
Sbjct: 136 DHIKRKTIKPGNVKMVVLDEADEMLDMGFREDI---------ETILENVPEERQTTFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                I ++T+K    +P    ++      E I++  +      K   +   I+      
Sbjct: 187 TMPKAILELTKKYQN-EPEHIKVVRKELTVENIKQYYIETRASNKIEVLSRLIDVYNPKL 245

Query: 499 --NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +  +  + L             +HG +  + ++ VMD F+NGT  +L+AT V   
Sbjct: 246 SVVFCNTKKGADELVGELQGRGYFADALHGDLKQVQRDIVMDKFRNGTIDILVATDVAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GIDV D   +   +        +H++ GR GR           +    ++      + + 
Sbjct: 306 GIDVDDVECVFNFDLPQDEEYYVHRI-GRTGRAGREGLSFSFVY---GRDMRKMKDIERY 361

Query: 614 TED 616
           T+ 
Sbjct: 362 TKS 364


>gi|317128977|ref|YP_004095259.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315473925|gb|ADU30528.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 482

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 124/357 (34%), Gaps = 35/357 (9%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIM 327
           +  T  Q+  +   L++         I++   GSGKT    I +   V   E   QA+++
Sbjct: 25  YELTDVQKEVLPLSLENKD------LIVKSPTGSGKTAAFAIPICEQVTWDENSPQALVL 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LA Q  E      +  +I    I G  P   ++  L++    + H+++GT     
Sbjct: 79  TPTRELAAQVKEEFMNIGRLKRIKALAIYGKQPFDRQKLELKQ----KTHVVVGTPGRLL 134

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVL 437
           D +Q   L +  +        DE    G   ++   L   A    V  + +  I   +  
Sbjct: 135 DHLQKGTLKMNKIKYLVIDEADEMFNRGFFDQVDSILKHLANYDKVTSIYSATISEAVEH 194

Query: 438 TSLGDIDI---SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            S   +       I  K     PI    + +N+  +      V + E   +  +      
Sbjct: 195 ISTRFMINPIKINIERKQINAHPISQSYVLVNKNAKFSAIQDVTIVENPDSCIVF----- 249

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V++          S   IHG +   ++ SVM+ FK G  + L+ T +   G
Sbjct: 250 ---CETQVNVDKLYKQLRDANYSCGKIHGGLPQKERFSVMNEFKEGKFRYLVTTNLAARG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           ID+   S++I  +        +H+  GR GR       I    P            +
Sbjct: 307 IDIESISLVINYDMPLDKEVYVHR-TGRTGRAGNKGKAITFITPDERILFREIEDYI 362


>gi|188994014|ref|YP_001928266.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
           33277]
 gi|188593694|dbj|BAG32669.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
           33277]
          Length = 427

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 75/361 (20%), Positives = 129/361 (35%), Gaps = 48/361 (13%)

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +G  A   +       T  Q + I  IL+          I     G+GKT   L+ +   
Sbjct: 14  DGLDAMNFIET-----TPVQAATIPPILEGRDV------IACAQTGTGKTAAYLLPILDR 62

Query: 318 VEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           + AG        AVIMAP   LAQQ  + ++ ++    +    I G        +    +
Sbjct: 63  LSAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAIYGGTDGVAWEQQRRGM 122

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAP 421
           A G A I+I T       +      L  V        D     G    +     Q  ++ 
Sbjct: 123 AMG-ADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQIYKQLPSSC 181

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             ++ +AT  P+   L +    D  ++              I I+R  E I +   +  E
Sbjct: 182 QTVMFSATMPPKIRKLAASILRDPIEVE-------------IAISRPPESIMQSAYICYE 228

Query: 482 GKKAYWICPQIEEKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            +K   +    E+            +  V    S       ++A +H  +    +E VM 
Sbjct: 229 AQKLPILRKLFEQSAPKRTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMR 288

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FKNG   +L+AT ++  GID+ +  ++I  +  H     +H++ GR  RG       + 
Sbjct: 289 DFKNGYVDVLVATDIVARGIDIDNIRVVINYDIPHDPEDYVHRI-GRTARGTNGEGLAIT 347

Query: 596 Y 596
           +
Sbjct: 348 F 348


>gi|158294546|ref|XP_315671.4| AGAP005652-PA [Anopheles gambiae str. PEST]
 gi|157015613|gb|EAA11703.5| AGAP005652-PA [Anopheles gambiae str. PEST]
          Length = 728

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 80/364 (21%), Positives = 132/364 (36%), Gaps = 35/364 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q   +   L        M+ I Q   GSGKTL  ++     ++         G  
Sbjct: 133 KPTAIQAQGMPIAL----SGRDMVGIAQ--TGSGKTLAYVVPSLVHIQHQATIRRGDGPI 186

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LAQQ  +    +          + G  P+  + + LER     A I+I T 
Sbjct: 187 ALILAPTRELAQQIQQVATDFGSRVSANNTCVFGGAPKGPQIRDLER----GAEIVIATP 242

Query: 384 ALFQDSIQYY--------KLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 243 GRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDRQVLMWSATWPKE 302

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L    L D     I             I+ +    E  ++L  +L+E        P 
Sbjct: 303 VRNLAEEFLADYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLLTEISAE----PD 358

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +       +  V+    +          IHG  S  +++ V+ +F+NG   +L+AT V 
Sbjct: 359 TKTIIFVETKRRVDDITRIVNRNGWRAVAIHGDKSQQERDYVLSTFRNGRQGILVATDVA 418

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D   +I  +        +H++ GR GR     +   L+    +  +   ++VL
Sbjct: 419 ARGLDVEDVKFVINYDYPSNSEDYVHRI-GRTGRSNNTGTAYTLFTNSNANKANDLINVL 477

Query: 612 KNTE 615
           +   
Sbjct: 478 REAN 481


>gi|90022842|ref|YP_528669.1| dystroglycan-type cadherin-like protein [Saccharophagus degradans
           2-40]
 gi|89952442|gb|ABD82457.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 516

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 130/350 (37%), Gaps = 40/350 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
           +PT  Q  AI  +L+          +     G+GKT    + +   +  G          
Sbjct: 40  TPTPIQAQAIPPVLEGRDV------MAAAQTGTGKTAGFTLPILEILAEGIENGRKVKPN 93

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   LA Q  E +  Y +   I   I+ G +    +   L     G   I++
Sbjct: 94  QARALVLTPTRELAAQVGENVALYGKYLPIKSTIVFGGVKINPQMMKLR----GGVDILV 149

Query: 381 GTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D     ++++ +L ++++DE  R      +   +K      ++       + L
Sbjct: 150 ATPGRLMDLYNQRAVKFDQLEMLVLDEADRMLDMGFIHDIRK------IMAILPKKRQNL 203

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    DI ++  K     P++  + P N     +++    + + +K   +   I+  
Sbjct: 204 MFSATFSQDIRELA-KSIVNNPVEITVNPPNSTATRVKQWICPVDKKEKPALLTHLIKTN 262

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           K          +    +     E      A IHG  S   +   +  FKNGT K+L+AT 
Sbjct: 263 KWQQVLVFSRTKHGANKLVKQLEGSGLRAAAIHGNKSQGARTKALAEFKNGTVKILVATD 322

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +   G+D+     ++  +        +H++ GR GR     + + L    
Sbjct: 323 IAARGLDIDQLPQVVNFDLPQVAEDYVHRI-GRTGRAGAEGNAVSLVSAD 371


>gi|226942516|ref|YP_002797589.1| DEAD box family ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
 gi|226717443|gb|ACO76614.1| ATP-dependent RNA helicase, DEAD box family [Azotobacter vinelandii
           DJ]
          Length = 557

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 140/378 (37%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +  GG         
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPVLERLFPGGHPDKEHRHG 76

Query: 323 ----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q ++  K Y ++ +++   I G +    + +AL R       +
Sbjct: 77  PRQARVLVLTPTRELAAQVHDSFKLYARDLKLVSACIFGGVGMNPQVQALSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L    P  +
Sbjct: 133 LVACPGRLLDLVGQGSVDLSHVEILVLDEADRMLDMGFIHDVKK------VLAKLPPKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI  +T K     P +  + P N   E IE+    L  G K   +   + 
Sbjct: 187 NLLFSATFSADIVNLTNK-LLHDPERIEVTPPNTTVERIEQRVFRLPAGHKRALLAHLVT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +            +    R     +      A IHG  S   +   +  FK+GT ++L+A
Sbjct: 246 QGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKSGTIRILVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-----LSK 602
           T +   G+D+     ++     +     +H++ GR GR       I L  P       S 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVEEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 603 NSYTRLSVLKNTEDGFLI 620
              TR S+ +    GF I
Sbjct: 365 ERMTRQSIPEGDWAGFDI 382


>gi|227818223|ref|YP_002818232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|227005726|gb|ACP15469.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
          Length = 481

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 142/378 (37%), Gaps = 40/378 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  ++ L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   
Sbjct: 12  SKEVRRALTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      Q +++ P   LA Q  E I    +  +I    I G  P A ++  L++    
Sbjct: 66  VEWEENKPQVLVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ---- 121

Query: 375 QAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
           + HI++GT     D I+           L++   DE    G   ++   + +  T    +
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT       L+       + I  K AG     I+  +  +   +++     V   E 
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIEN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I  + +E  +  +R          +        IHG M   D+  VMD F+ G  
Sbjct: 242 PDSCIIFCRTQENVDHVYRQ--------LDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKF 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + L+AT V   GID+ + + +I  +      + +H+  GR GR       I    P   +
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYEDR 352

Query: 603 NSYTRLSVLKNTEDGFLI 620
                 + +     GF I
Sbjct: 353 FLEEIEAYI-----GFAI 365


>gi|163738820|ref|ZP_02146234.1| ATP-dependent RNA helicase, putative [Phaeobacter gallaeciensis
           BS107]
 gi|163741469|ref|ZP_02148860.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10]
 gi|161385203|gb|EDQ09581.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10]
 gi|161388148|gb|EDQ12503.1| ATP-dependent RNA helicase, putative [Phaeobacter gallaeciensis
           BS107]
          Length = 516

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 141/369 (38%), Gaps = 46/369 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           SPT  Q  AI   L+          +     G+GKT    + M   +  G       +++
Sbjct: 24  SPTPIQAGAIPPALEGRDV------LGIAQTGTGKTASFTLPMITLLARGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    YT++ ++   ++ G +    +   +++       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDTLIDK----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KLIL     ++VDE  R      +   ++       +   TP   +TL  ++
Sbjct: 134 LLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIER-------IFGLTPFTRQTLFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL------SEGKKAYWICPQIE 493
               +I +IT       P +  +       E I +  V+        EG +   +   + 
Sbjct: 187 TMAPEIERITNTFL-SAPARVEVARQATTSENITQGVVLFKASRRDREGSEKRKLLRHLI 245

Query: 494 EKK---------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +++           N ++ V+      + +    A IHG +    +   ++ F+ G+ + 
Sbjct: 246 DQEGEKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFREGSLRF 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+A+ V   G+DV   S +   +        +H++ GR GR     S +++  P   KN 
Sbjct: 306 LVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRI-GRTGRAGRDGSAMMICVPKDEKNL 364

Query: 605 YTRLSVLKN 613
                +++N
Sbjct: 365 EDIERLVQN 373


>gi|156837514|ref|XP_001642781.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160358661|sp|A7TS37|RRP3_VANPO RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|156113348|gb|EDO14923.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 506

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 132/348 (37%), Gaps = 33/348 (9%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
            +N+ F  PT  Q  +I   LQ          I     GSGKT    I +   +    Q 
Sbjct: 101 CKNLNFAKPTPIQARSIPPALQGHD------IIGLAQTGSGKTAAFAIPILNRLWHDQQP 154

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A I+AP   LAQQ  E          +    I G M    + + L R    + HIII 
Sbjct: 155 YYACILAPTRELAQQIKETFDSLGSLMGVRSACIVGGMNMMDQARDLMR----KPHIIIA 210

Query: 382 THALFQDSIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           T     D ++        KL  +++DE  R      L +        +L +  T    T 
Sbjct: 211 TPGRLMDHLENTRGFSLRKLKFLVMDEADRL-----LDMEFGPVLDRILKIIPTQGRTTY 265

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE- 494
           + ++     I K+ ++ +   P+K  +    +  + + +  +V+  G K  ++   + E 
Sbjct: 266 LFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTYLIYLMNEF 324

Query: 495 -----KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   +  ++  ER  +L      S   +HG ++   +   +D FK G   +L+AT 
Sbjct: 325 IGKTIIVFTRTKANAERITTLANLLEFSATALHGDLNQNQRTGSLDLFKAGRRSILVATD 384

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   G+D+    I+I  +      + +H++ GR  R       I L  
Sbjct: 385 VAARGLDIPSVDIVINYDIPVDSKSYIHRV-GRTARAGRSGKSISLVS 431


>gi|145588789|ref|YP_001155386.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047195|gb|ABP33822.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 473

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 135/370 (36%), Gaps = 44/370 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q  +I  +L           +     G+GKT   ++ +   +              
Sbjct: 51  PTPIQAQSIPHVLAG------SDLMGAAQTGTGKTAAFVLPIIQQILRHASNSASPARHP 104

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+++ P   LA Q  E    Y+++T +   ++ G +    +   L         I+I 
Sbjct: 105 IRALVLTPTRELAVQVAENAASYSKHTDLRAAVVYGGVDMKEQVAILRN----GVEILIA 160

Query: 382 THALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D I        ++ ++++DE  R      L   Q       ++       +TL+
Sbjct: 161 TPGRLLDHIGSKVANLSQVEILVLDEADRMLDMGFLPDLQ------RIIDLIPAQRQTLL 214

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I K+ +    R P+   +   N   + ++++  ++S G K   I   +E + 
Sbjct: 215 FSATFSPEIKKLAQSYL-RTPVTVEVARQNAAADTVKQVVHMVSSGDKQRAIVKVLEART 273

Query: 497 E----------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                      +N R    +     E        IHG  S  ++   +D+FK+G  + L+
Sbjct: 274 RLGLSRQCIIFTNSRLGCAKLARALERDGIKAGAIHGDKSQGERTLTLDAFKSGAIEALV 333

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ D   +I     +     +H++ GR GR       I L      +    
Sbjct: 334 ATDVAARGLDIPDMPCVINHELPYNAEDFIHRI-GRTGRAGSKGDAIALVDASEKRLLDD 392

Query: 607 RLSVLKNTED 616
              ++K   D
Sbjct: 393 IEKLMKRKLD 402


>gi|52145260|ref|YP_086717.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
 gi|51978729|gb|AAU20279.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
          Length = 481

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 141/378 (37%), Gaps = 40/378 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  ++ L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   
Sbjct: 12  SKEVRRALTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+++ P   LA Q  E I    +  +I    I G  P A ++  L++    
Sbjct: 66  VEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ---- 121

Query: 375 QAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
           + HI++GT     D I+           L++   DE    G   ++   + +  T    +
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 425 LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT       L  T +      +I         I+  +  +   +++     V   E 
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIEN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I  + +E  +  +R          +        IHG M   D+  VMD F+ G  
Sbjct: 242 PDSCIIFCRTQENVDHVYRQ--------LDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKF 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + L+AT V   GID+ + + +I  +      + +H+  GR GR       I    P   +
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYEDR 352

Query: 603 NSYTRLSVLKNTEDGFLI 620
                 + +     GF I
Sbjct: 353 FLEEIEAYI-----GFAI 365


>gi|154247132|ref|YP_001418090.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154161217|gb|ABS68433.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 559

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 136/384 (35%), Gaps = 54/384 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  IL           I     G+GKT    + +   +            +
Sbjct: 59  TPTPIQAEAIPQILAGRD------LIGIAQTGTGKTAAFALPILDRLVRHPHRPEPKSVR 112

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A++++P   L+ Q  E  +K+ ++  I V +  G +P   + +AL R       +++ T 
Sbjct: 113 ALVLSPTRELSGQIVENFEKFGRHANISVSLAIGGVPMGRQIRALSR----GVDVLVATP 168

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPR 433
               D ++ +         L+L   D+    G     R  + +     H L  +AT    
Sbjct: 169 GRLIDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLPHKRHSLFFSATMPHA 228

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
              L      D            P++  + P+ +  + +E+  +++ +  K   +   + 
Sbjct: 229 IAELAGSMLRD------------PVRVAVTPVAKTADRVEQRVILVDKANKGQLLAEVLS 276

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           +   ++   +      +   IHG  S   ++ V+ +F+ G  + LIA
Sbjct: 277 TEDIDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIRTLIA 336

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   GIDV   S +I  +  +   + +H++ GR  R       I            + 
Sbjct: 337 TDIAARGIDVTGVSHVINFDLPNVPESYVHRI-GRTARAGREGIAISFCDHEERAFLRSI 395

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEG 631
             ++K       +   D   R  G
Sbjct: 396 EKLIK-----MQLPSSDR--RGAG 412


>gi|300853611|ref|YP_003778595.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300433726|gb|ADK13493.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 496

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 132/354 (37%), Gaps = 43/354 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           +  + +  P++ QE  I  I ++         I++   GSGKT    I +   +E     
Sbjct: 34  IEKLGYKNPSQVQEKVIPLIFKNKD------IIVKSQTGSGKTAAFAIPICEKIELEEKN 87

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++AP   LA Q  E      +  +I    I G  P   + K L++    + H+I+G
Sbjct: 88  PQVLVLAPTRELALQIKEDFYDIGRFKRINCTAIFGKEPITTQIKELKQ----RTHVIVG 143

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATPI 431
           T     D I+   L L  +        DE    G   ++K  L +       LL +AT  
Sbjct: 144 TPGRTLDHIEKDTLSLKKIQYLIIDEADEMLNMGFIDQVKAVLDKLPKNRVTLLFSATIP 203

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L L +                 PI   I   + +   I ++   +   KK   +   
Sbjct: 204 QEILKLCAAYM------------NNPINVEIDAEDPVINRINQIYYQIEAYKKFDLLNKL 251

Query: 492 IEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +  ++          +  VE      +    S + +HG M   ++  VM  FK G    L
Sbjct: 252 VYTQRPESSMIFCRTKKNVEDLVLQMKGKGYSCSGLHGGMLQSERIDVMKRFKRGEFIFL 311

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           + T V   GIDV + + II  +      + +H++ GR GR  +  + I    P 
Sbjct: 312 VCTDVAARGIDVENITHIINYDIPMEKESYVHRI-GRTGRAGKSGTAITFVTPK 364


>gi|323304679|gb|EGA58441.1| Rrp3p [Saccharomyces cerevisiae FostersB]
          Length = 543

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 132/348 (37%), Gaps = 33/348 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
            +N+ +S PT  Q  AI   L+          I     GSGKT    I +   +   +  
Sbjct: 138 CKNLNYSKPTPIQSKAIPPALEGHD------IIGLAQTGSGKTAAFAIPILNRLWHDQEP 191

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A I+AP   LAQQ  E          +    I G M    + + L R    + HIII 
Sbjct: 192 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR----KPHIIIA 247

Query: 382 THALFQDSIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           T     D ++        KL  +++DE  R      L +        +L +  T    T 
Sbjct: 248 TPGRLMDHLENTKGFSLRKLKFLVMDEADRL-----LDMEFGPVLDRILKIIPTQERTTY 302

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I K+ ++ +   P+K  +    +  + + +  +V+  G K  ++   + E 
Sbjct: 303 LFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEF 361

Query: 496 KESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      ++  ER + L      S   +HG ++   +   +D FK G   +L+AT 
Sbjct: 362 IGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATD 421

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   G+D+    I++  +      + +H++ GR  R       I L  
Sbjct: 422 VAARGLDIPSVDIVVNYDIPVDSKSYIHRV-GRTARAGRSGKSISLVS 468


>gi|313683287|ref|YP_004061025.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313156147|gb|ADR34825.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 526

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 76/343 (22%), Positives = 130/343 (37%), Gaps = 37/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--AVEAGGQAVIMAP 329
           +P+  Q+  I  I++          + Q   G+GKT    +       ++ G + +I+ P
Sbjct: 36  TPSPIQQMVIPVIMEGRDV------VGQAHTGTGKTAAFGLPALNKMHLKGGIETLIITP 89

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I KY ++  +    I G      +   +ER     A +II T     D 
Sbjct: 90  TRELANQVSDEIFKYGKHLGVRTVTIYGGSSYNRQMDLIER----GAQVIIATPGRLLDM 145

Query: 390 IQYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVL 437
           +    L        IL   DE    G         T   T    LL +AT P P + L  
Sbjct: 146 LSRNMLKGFTPSTVILDEADEMLDMGFLDDINEIFTYLPTERQTLLFSATMPAPIKQLAE 205

Query: 438 TSLGDIDISKITEKPAGRKPIKT--VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             L +   + IT+       I     +I  +  D+ I  ++++ SE  K   +  +    
Sbjct: 206 RILVNPFFASITKSETTNTDITQQYYVIEESERDDAI--IRLMDSEDAKKTVVFCRT--- 260

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +  V+R +++          +HG M    +ESV+   K     +LIAT V   G+
Sbjct: 261 -----KKEVDRLSNVLSAAGYMAKGLHGDMEQRQRESVIKGLKTDAVDVLIATDVAARGL 315

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            + D + +   +      + +H++ GR GR  +    I L  P
Sbjct: 316 HIDDVTHVFNYHIPFDPESYVHRI-GRTGRAGKKGVAITLVTP 357


>gi|242093508|ref|XP_002437244.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor]
 gi|241915467|gb|EER88611.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor]
          Length = 567

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 65/384 (16%), Positives = 144/384 (37%), Gaps = 57/384 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------------- 319
           PT  Q  A+  +   M+ ++ M        GSGKT    + + + +              
Sbjct: 79  PTPVQRYAMPIV---MAGRDLM---ACAQTGSGKTAAFCLPVVSGLVVPPAGGGSGYGYG 132

Query: 320 ----------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                     A  +A+++AP   LA Q  E  +K++  T + V +  G  P  ++ + LE
Sbjct: 133 RRDRGSFDRVAKPRALVLAPTRELAAQINEEARKFSFQTGLRVVVAYGGTPMYNQLRDLE 192

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVL 424
           R       +++ T     D ++  ++ L  +     DE  R          Q      ++
Sbjct: 193 R----GVDLLVATPGRLVDMVERSRISLEGIKYLVMDEADRMLDMGFEP--QIRKIVDMM 246

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            M    + +T++ ++    +I ++         I   +  +    ++IE+    +++G+K
Sbjct: 247 NMPKKSVRQTMLFSATFPPEIQRLASDFL-YNYIFVTVGRVGSSTDLIEQKLEFVNDGEK 305

Query: 485 AYWICPQIEEKKE---------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             ++   ++++                    +   +      +        IHG  +  +
Sbjct: 306 RGFLIDLLQKQSAGVANSKLQQPLTLVFVETKREADSLRYFLQSKGFPATAIHGDRTQQE 365

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +ES + SFK+GT  +++AT V   G+DV + + +I  +        +H++ GR GR  + 
Sbjct: 366 RESALKSFKSGTTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRI-GRTGRAGKA 424

Query: 590 SSCILLYHPPLSKNSYTRLSVLKN 613
                 +       +   L ++  
Sbjct: 425 GIATAFFTESNHPLAKGLLELMTE 448


>gi|237707985|ref|ZP_04538466.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 9_1_42FAA]
 gi|229457971|gb|EEO63692.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 9_1_42FAA]
          Length = 434

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 134/344 (38%), Gaps = 34/344 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQAVI 326
           +PT  QE AI  +L+          +     G+GKT    I +   +     + G +A+I
Sbjct: 23  TPTPIQEQAIPVLLKGKD------LLGCAQTGTGKTAAFAIPLIQRLYQSDYKKGIKALI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   +Y + T +   +I G +PQ  +  AL+R       ++I T    
Sbjct: 77  LTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALKR----GVQVLIATPGRL 132

Query: 387 QD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            D      I    L   ++DE  R      +   +K      +L       +TL  ++  
Sbjct: 133 LDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKK------VLKLIPARRQTLFFSATM 186

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC-----PQIEE-K 495
             +I K+ +      P K  + P++   + I++    + + +K   +      P+IE   
Sbjct: 187 PSEIEKLADS-MLTNPKKVEVTPVSSTVDTIQQSVYFVEKKEKKDLLLHLLKNPEIESVL 245

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  +   ++   +          IHG  S   ++  + +FK+ T ++LIAT +   GI
Sbjct: 246 IFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDIAARGI 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV   S +I     +     +H++ GR GR       I      
Sbjct: 306 DVNQLSHVINYELPNISETYVHRI-GRTGRAGHDGIAISFCESE 348


>gi|242012580|ref|XP_002427009.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212511247|gb|EEB14271.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 538

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 74/387 (19%), Positives = 138/387 (35%), Gaps = 57/387 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+  I  I   MS ++ M        GSGKT   LI +   +    Q        
Sbjct: 153 KPTPIQKHCIPII---MSGRDLM---GCAQTGSGKTAAFLIPIINKLLEKNQIMSKSSFC 206

Query: 324 ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               +IM P   L  Q +E  +K+++ T + V +  G     H+ + ++   +    I++
Sbjct: 207 TPEVIIMTPTRELTIQIFEEARKFSRGTFLKVALTYGGTAVFHQVEKIKNGCN----ILV 262

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            T     D +Q           LIL   D     G      +++     +   M ++   
Sbjct: 263 ATPGRLLDFVQRGIIDFSMTEFLILDEADRMLDMGF-----ISEIKKMINHPTMKSSSQR 317

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++    ++  + +          V I      +V+++    +S+ +K   +   +
Sbjct: 318 QTLMFSATFPSEVQHLAKTFLNNYLFVVVGIVGGACSDVVQKFFS-VSKFQKRNKLIELL 376

Query: 493 EEKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E    S        +   +   +           IHG     ++E  +  FK G   +L+
Sbjct: 377 ESNGSSKCLVFVEQKRTTDFIATFLCEKNFPATSIHGDRDQREREEALRDFKTGKMDILV 436

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-------- 598
           AT+V   G+D+ + + ++  +        +H++ GR GR          Y P        
Sbjct: 437 ATSVAARGLDIKNVAHVVNFDLPKTIDEYVHRI-GRTGRVGNRGLATSFYDPLCDSHLAP 495

Query: 599 ----PLSKNSYTRLSVL---KNTEDGF 618
                LS+        L   K TE GF
Sbjct: 496 ALVKILSQAGQEIPDFLLEFKETEIGF 522


>gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 514

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 132/365 (36%), Gaps = 41/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            P+K Q   I  +LQ          I Q + G+GKTL     +   +   E     +++ 
Sbjct: 23  EPSKIQSEVIPVLLQG------SDVIGQAETGTGKTLAYGAPIINNIGSNEGKVFCLVLT 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + + +  + +++ +  + G +    + KA++R       IIIGT     D
Sbjct: 77  PTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIKR----GVDIIIGTPGRVLD 132

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+           L+L   DE    G    +K     T             +T++ ++ 
Sbjct: 133 LIKRDILRLNDVKYLVLDEADEMLDMGFIDDIKEIINHTNKE---------RQTMMFSAT 183

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
              +I  + +K          I+        ++     +   ++   +C  ++ ++    
Sbjct: 184 MPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRILDVEEPSST 243

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+      +    ++  +HG MS   + + +  FK G    L+AT V   G
Sbjct: 244 IIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGNLDFLVATDVAARG 303

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH----PPLSKNSYTRLSV 610
           ID+ + + +I  N      + +H++ GR GR         L      P L +        
Sbjct: 304 IDIENLTHVINYNLPQDVESYVHRI-GRTGRANRSGVAYTLVTSREYPALKRIERETKCK 362

Query: 611 LKNTE 615
           ++  E
Sbjct: 363 IRRKE 367


>gi|296807861|ref|XP_002844269.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Arthroderma
           otae CBS 113480]
 gi|238843752|gb|EEQ33414.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Arthroderma
           otae CBS 113480]
          Length = 1183

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 94/510 (18%), Positives = 174/510 (34%), Gaps = 72/510 (14%)

Query: 136 IIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQ 195
           +    P  IF +  D+N   IE         + D        AL+      + I      
Sbjct: 456 LKHQQPEAIFGDENDINMDPIEPE-------AEDFL------ALASKSKRKKEIPSINHS 502

Query: 196 KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPI 255
           K ++    +AF       +  D    S      A    +  ++  + +R           
Sbjct: 503 KMNYEPFRKAFYT-----EPVDLAGLSE-----AEVANIRLELDGIKVRGVDVPTPVQKW 552

Query: 256 NVEGKIAQKI--LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           +  G   Q +  +R + +  PT  Q  A+  I+           I     GSGKT+  L+
Sbjct: 553 SQCGLGVQTLDVIRKLGYEGPTSIQSQAVPAIMSGRDV------IGVAKTGSGKTIAFLL 606

Query: 313 AMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
            M   +          G  ++IM P   LA Q +   + + +   +      G  P   +
Sbjct: 607 PMFRHIRDQRPLENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQ 666

Query: 365 RKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQ 416
              L+R     A II+ T     D +           ++  V++DE  R           
Sbjct: 667 IAELKR----GAEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVM 722

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K            P  +T++ ++    ++  +  K    KP++ ++   + +   I ++ 
Sbjct: 723 KILGNIR------PNRQTVLFSATFPRNMEALARKTLS-KPVEIIVGGRSVVAPEITQIV 775

Query: 477 VVLSEGKKAYWICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGR 524
            V ++  K   +   +         E+ +   F    E  + L             IHG 
Sbjct: 776 EVRNDDAKFVRLLELLGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGG 835

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
              ID++S +D FK G   +LIAT+V   G+DV    +++  +A +     +H+  GR G
Sbjct: 836 KDQIDRDSTIDDFKAGIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTG 894

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           R     + +        + S      LK +
Sbjct: 895 RAGNTGTAVTFLTEDQERYSVDISKALKQS 924


>gi|170754379|ref|YP_001780277.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B1 str.
           Okra]
 gi|169119591|gb|ACA43427.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B1 str.
           Okra]
          Length = 425

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 137/358 (38%), Gaps = 38/358 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------QA 324
           T  QE +I  IL  +        +     G+GKT    + +   +  G          +A
Sbjct: 25  TPIQEKSIPYILDGID------LVGCAQTGTGKTAAFAVPVLQNLSKGKKVNKNPRPIRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  +  + Y +   +   +I G + Q  + KAL         I+I T  
Sbjct: 79  LVLAPTRELAIQIGDSFECYGKYINLKSAVIFGGVSQNPQTKALRE----GVDILIATPG 134

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I    +   ++DE  R      +   +K      ++     + + L+ ++
Sbjct: 135 RMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKK------IISKLPKVRQNLLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
               +I+K+ +    + PI+  + P +   + I +    + + +K   +   +++K    
Sbjct: 189 TMPSEITKLVDS-IVKDPIRVEVTPASSTVDTITQEVYHVRKKQKRALLKHLLKDKSIES 247

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +     N + +    +      IHG  S   ++  +++FK G  ++L+AT +   
Sbjct: 248 ALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVATDIAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           GIDV + S +   N        +H++ GR GR       I       +K+      ++
Sbjct: 308 GIDVNELSHVFNYNLPDVPETYVHRI-GRTGRAGAKGVAISFCDIEETKSLKAIEKLI 364


>gi|322379432|ref|ZP_08053802.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1]
 gi|322380957|ref|ZP_08055023.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis
           HS5]
 gi|321146629|gb|EFX41463.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis
           HS5]
 gi|321148141|gb|EFX42671.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1]
          Length = 471

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 70/340 (20%), Positives = 120/340 (35%), Gaps = 33/340 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAPI 330
           P+  QE AI  IL+          I Q   G+GKT    + +   ++     +A+I+ P 
Sbjct: 43  PSPIQEKAIPVILEGKDV------IAQAQTGTGKTAAFALPIIQNLQNDKSIEALIITPT 96

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  + I K  ++++     + G      +   LER       ++I T     D +
Sbjct: 97  RELAMQISDEIFKLGKSSRTRTICVYGGQSIKKQCDLLER----NPQVMIATPGRLLDHL 152

Query: 391 QYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +  +L        +L   DE    G                 +LL +AT P P + L   
Sbjct: 153 KNKRLKRFAPRVVVLDESDEMLDMGFLDDIEEIFNYLPEDAQILLFSATMPAPIKDLANK 212

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            L D     I         I      IN  +     ++++  E      I          
Sbjct: 213 ILQDPVSIHIAPTHVTNADISQRFYVINEHERNEAIMRLLDKENHSKSIIF--------M 264

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+  +            +HG M    +   + +FK+    +L+AT V   G+D+ 
Sbjct: 265 RMKREVDELHQFLSAKGYKTTPLHGDMEQRARRESIKAFKSKLADVLVATDVASRGLDIS 324

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           D S +   +      + +H++ GR GR  +    I L  P
Sbjct: 325 DVSHVFNYHLPLNTESYIHRI-GRTGRAGKKGVAITLVTP 363


>gi|209808970|ref|YP_002264508.1| ATP-dependent RNA helicase DbpA [Aliivibrio salmonicida LFI1238]
 gi|208010532|emb|CAQ80900.1| ATP-independent RNA helicase (DEAD/DEAH box helicase) [Aliivibrio
           salmonicida LFI1238]
          Length = 462

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 90/459 (19%), Positives = 180/459 (39%), Gaps = 61/459 (13%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + ++  T  Q  ++  +L+          I QG  GSGKT    + + A ++     
Sbjct: 19  LDTLGYTEMTPIQAQSLPFMLEGKDV------IAQGKTGSGKTAAFGLGLLANLDVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    I+K  +    I V  + G +P   +  +LE      AHII+
Sbjct: 73  VQSLVLCPTRELADQVAVEIRKLARSIHNIKVLTLCGGVPFGPQIGSLEH----GAHIIV 128

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQ--RLKLTQKATAPHVLLMTATP 430
           GT    ++ ++   L L  +        D     G Q    L L         LL +AT 
Sbjct: 129 GTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDLVLDHAPAKRQNLLFSATF 188

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P+   +    + +  ++K  E       I      ++  ++ ++ L+++L + +     
Sbjct: 189 PPQIKSIADRIMNNPIMTK-AEDKIEETSITQHFYKVDDFEDRLKALQILLLKHR----- 242

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            P+      +  R   E  + L  HF  S+  +HG +   D++  +  F N +  +L+AT
Sbjct: 243 -PESTVIFCNTKRVTQEVADELR-HFDFSVTALHGDLEQRDRDKALVRFANKSTSILVAT 300

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+     +I           +H++ GR GR  +    + L++   + +     
Sbjct: 301 DVAARGLDIDSLDAVINFELSRDPEVHVHRI-GRTGRAGKKGIALSLFNNKETNSFAQIE 359

Query: 609 SVLKNT-EDGFLIAEEDL-------------------KQRKEGEILG--IKQSGMPKFLI 646
             +  T  D  L +E+ L                    + + G+ILG    + G+    +
Sbjct: 360 DYMSLTLNDEPLPSEDHLSEQPHFPEMITLWIDGGKKNKLRPGDILGALTGKDGVDGKQV 419

Query: 647 AQPELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            +  + D  + + +    AK  L +  +   ++G++ R+
Sbjct: 420 GKINVFDFHAYVAVHTSIAKAALQKL-ETGKMKGRTFRV 457


>gi|198282877|ref|YP_002219198.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666755|ref|YP_002425078.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247398|gb|ACH82991.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518968|gb|ACK79554.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 617

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 144/382 (37%), Gaps = 25/382 (6%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +  QK +  I +  P+  Q  +I  +L+          I     G+GKT    + + + V
Sbjct: 16  EPIQKAVTEIGYEQPSPIQAQSIPPLLEGRDV------IGLAQTGTGKTAAFALPLLSRV 69

Query: 319 EAG---GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHG 374
           + G    Q +++AP   LA Q  E ++ Y +      V  I G      + K L+R    
Sbjct: 70  DLGLRAPQLLVLAPTRELAIQVAEAMQSYAKFLPGFHVLPIYGGQAMTLQLKQLQR---- 125

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              +++GT    QD ++   L L  +         + L++        +L    TP  R 
Sbjct: 126 GVQVVVGTPGRIQDHLRRKTLRLDHLQAVVLDEADEMLRMGFIDAVEDIL--KHTPEGRQ 183

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + L S    D  +   K   R P++  I         I +    +S   K   +   +E 
Sbjct: 184 VALFSATMPDAIRRIAKTYLRNPLEIRIKSATTTVAAIRQRYWQVSGTHKLDALTRILEV 243

Query: 495 KKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           ++ + +      ++         E    +   ++G +S   +E  ++  K GT  +++AT
Sbjct: 244 EESNAWLVFVRTKTATVELAERLEARGYACGALNGDLSQAMREQTIERLKAGTLDIVVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S +I  +  +   A +H++ GR GR       IL   P      +   
Sbjct: 304 DVAARGLDVDRISHVINYDIPNDTEAYVHRI-GRTGRAGRTGDAILFVAPRERHLLHAIE 362

Query: 609 SVLKNTEDGFLI-AEEDLKQRK 629
                T     + + ED+  R+
Sbjct: 363 RATGQTITAMHLPSIEDVADRR 384


>gi|171687132|ref|XP_001908507.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943527|emb|CAP69180.1| unnamed protein product [Podospora anserina S mat+]
          Length = 489

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 135/370 (36%), Gaps = 40/370 (10%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------ 320
           +  P +PT  Q       L           +   + GSGKTL   +     + A      
Sbjct: 79  QGFP-APTAIQAQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAP 131

Query: 321 --GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G   +I+AP   LA Q  + I K+ ++++I    + G +P+  + + L+R       +
Sbjct: 132 GDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDLQR----GVEV 187

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTA 428
            I T     D ++  K        L+L   D     G   Q R  + Q       L+ +A
Sbjct: 188 CIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSA 247

Query: 429 TPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           T     R L    L D     I           T I+ +    E  +++   L +  +  
Sbjct: 248 TWPKDVRNLASDFLTDFIQVTIGSMDLSANHRITQIVEVVSESEKRDKMIKELEKIME-- 305

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  E K   F       + +             IHG     +++ V+D FK G   
Sbjct: 306 ---DKTAENKCLIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSP 362

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +++AT V   GIDV + + +I  +  +     +H++ GR GR     + I  +    +K 
Sbjct: 363 IMVATDVASRGIDVRNITHVINYDYPNNSEDYIHRI-GRTGRAGAKGTAITYFTTDNAKQ 421

Query: 604 SYTRLSVLKN 613
           +   + VL+ 
Sbjct: 422 ARDLVGVLRE 431


>gi|242051719|ref|XP_002455005.1| hypothetical protein SORBIDRAFT_03g002860 [Sorghum bicolor]
 gi|241926980|gb|EES00125.1| hypothetical protein SORBIDRAFT_03g002860 [Sorghum bicolor]
          Length = 488

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 133/362 (36%), Gaps = 41/362 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L+          I   + GSGKTL  L+     V A        G  
Sbjct: 113 EPTPIQSQGWPMALRGRD------LIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPI 166

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +   K+  +++I    I G +P+  + + L++       I+I T 
Sbjct: 167 VLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQK----GVEIVIATP 222

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D I+       ++  +++DE  R          +K  +         P  +TL  +
Sbjct: 223 GRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIR------PDRQTLYWS 276

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +    ++ ++           T+     + +  I +   +LSE +K   +   +E+  + 
Sbjct: 277 ATWPKEVEQLARNFLFDPYKVTIGSEELKANHAIVQHVEILSESQKYNKLVNLLEDIMDG 336

Query: 498 ------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  + +   ++              IHG  S  +++ V+  FK+G   ++ AT V 
Sbjct: 337 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVA 396

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+       +I  +        +H++ GR GR     +    +    ++ +   +S+L
Sbjct: 397 ARGL----VKYVINYDFPGSLEDYVHRI-GRTGRAGAKGTAYSFFTAANARFAKELISIL 451

Query: 612 KN 613
           + 
Sbjct: 452 EE 453


>gi|225682788|gb|EEH21072.1| pre-mRNA-processing ATP-dependent RNA helicase prp5
           [Paracoccidioides brasiliensis Pb03]
          Length = 1203

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 95/513 (18%), Positives = 175/513 (34%), Gaps = 72/513 (14%)

Query: 133 KNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKD 192
           K       P  IF +  DV+   I+           D F  I  +A  +       +   
Sbjct: 481 KFSKSKQQPEAIFGDEDDVDMNAIDPE--------ADDFLAITSKARKKKD-----LPLV 527

Query: 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIG 252
             +K ++    +AF       +  D    +           L  ++  + +R     +  
Sbjct: 528 NHEKMNYEPFRKAFYA-----EPVDLAGLTE-----EEVAALRLELDGIKVRGVDVPKPV 577

Query: 253 IPINVEGKIAQKI--LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
              +  G   Q +  +R + +  PT  Q  AI  I+           I     GSGKT+ 
Sbjct: 578 QKWSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDV------IGVAKTGSGKTIA 631

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L+ M   ++         G   +IM P   LA Q ++  K + +   +      G  P 
Sbjct: 632 FLLPMFRHIKDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPI 691

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLK 413
             +   L+R     A II+ T     D +           ++  V++DE  R        
Sbjct: 692 KDQIAELKR----GAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEP 747

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
              K      +L    P  +T++ ++    ++  +  K    KP++ V+   + +   I 
Sbjct: 748 QVMK------ILGNVRPQRQTVLFSATFPRNMEALARKTLT-KPVEIVVGGRSVVAPEIT 800

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFR---------SVVERFNSLHEHFTSS---IAII 521
           ++  V +E  K   +   + +    +              E  + L             I
Sbjct: 801 QIVEVRNEDTKFVRLLALLGDLYADDNNEDARTLIFVDRQEAADGLLRDLMHKGYPCMSI 860

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG    +D++S +  FK G   +LIAT+V   G+DV    ++I  +A +     +H+  G
Sbjct: 861 HGGKDQVDRDSTIADFKAGVFPILIATSVAARGLDVKQLKLVINYDAPNHLEDYVHR-AG 919

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           R GR     + +        + S      LK +
Sbjct: 920 RTGRAGNTGTAVTFLTEVQERYSVDISKALKQS 952


>gi|87302313|ref|ZP_01085138.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
 gi|87283238|gb|EAQ75194.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
          Length = 645

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 133/343 (38%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q++AI +++           + Q   G+GKT    + + A ++      Q +++ 
Sbjct: 107 DPSPIQKAAIPELMLGRD------LVGQAQTGTGKTAAFALPLLARLDPQQRTPQVLVLT 160

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E    Y      + V  I G      +   L+R       I++GT     
Sbjct: 161 PTRELALQVAEAFNGYAAKLPQVRVLPIYGGADFRDQIVRLKR----GVQIVVGTPGRVM 216

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPI--PRTL 435
           D ++           L+L   DE  R G    ++    Q      V+L +AT     R L
Sbjct: 217 DHMRQGTLDLSGLRCLVLDEADEMLRMGFIDDVEWVLEQLPQQRQVVLFSATMPSEIRRL 276

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L +     I +K A    I+   + ++   ++    +V+ +E  +   I  +    
Sbjct: 277 SRKYLQNPAEVTIQQKGAENSTIRQRHLVVHGAQKLEALTRVLEAESSEGVIIFART--- 333

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +++    +   E     +A+++G +    +E  ++  ++G   +L+AT V   G+
Sbjct: 334 -----KAITLTVSEALEQQGYDVAVLNGDVPQNQRERTVERLRSGQVNVLVATDVAARGL 388

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV   +++I  +      A +H++ GR GR       IL   P
Sbjct: 389 DVDRITLVINYDIPFDSEAYVHRI-GRTGRAGRQGDAILFLTP 430


>gi|323348235|gb|EGA82484.1| Rrp3p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 543

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 132/348 (37%), Gaps = 33/348 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
            +N+ +S PT  Q  AI   L+          I     GSGKT    I +   +   +  
Sbjct: 138 CKNLNYSKPTPIQSKAIPPALEGHD------IIGLAQTGSGKTAAFAIPILNRLWHDQEP 191

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A I+AP   LAQQ  E          +    I G M    + + L R    + HIII 
Sbjct: 192 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR----KPHIIIA 247

Query: 382 THALFQDSIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           T     D ++        KL  +++DE  R      L +        +L +  T    T 
Sbjct: 248 TPGRLMDHLENTKGFSLRKLKFLVMDEADRL-----LDMEFGPVLDRILKIIPTQERTTY 302

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I K+ ++ +   P+K  +    +  + + +  +V+  G K  ++   + E 
Sbjct: 303 LFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEF 361

Query: 496 KESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      ++  ER + L      S   +HG ++   +   +D FK G   +L+AT 
Sbjct: 362 IGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATD 421

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   G+D+    I++  +      + +H++ GR  R       I L  
Sbjct: 422 VAARGLDIPSVDIVVNYDIPVDSKSYIHRV-GRTARAGRSGKSISLVS 468


>gi|288904866|ref|YP_003430088.1| ATP-dependent RNA helicase [Streptococcus gallolyticus UCN34]
 gi|288731592|emb|CBI13147.1| putative ATP-dependent RNA helicase [Streptococcus gallolyticus
           UCN34]
          Length = 526

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 70/368 (19%), Positives = 129/368 (35%), Gaps = 34/368 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     ++      QA+++A
Sbjct: 23  EPSPIQELTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLDKIDTNRNLVQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ +   + V  + G      + KAL       AHI++GT     D
Sbjct: 77  PTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLV 436
            I+   L L  V        DE    G        +++       LL +AT     + + 
Sbjct: 133 LIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLFSATMPEAIKRIG 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +  + + +  K+  K      +    I +   D+     +++  +  +   +  +     
Sbjct: 193 VKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMDVDQPELSIVFGRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D
Sbjct: 249 ----KRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + +   +      + +H++ GR GR  +    I    P           + K    
Sbjct: 305 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKHGQSITFVAPNEMGYLSIIEKLTKKRMK 363

Query: 617 GFLIAEED 624
           G   A  D
Sbjct: 364 GLKPATAD 371


>gi|163789554|ref|ZP_02183992.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
 gi|159875086|gb|EDP69152.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
          Length = 483

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 138/362 (38%), Gaps = 37/362 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             +  +I   +     F PTK QE  I   L+          I++   GSGKT+   + +
Sbjct: 10  FAISDEIVTALTSLRYFHPTKVQEEVIPLALEGKDV------IVESQTGSGKTVSYGVPL 63

Query: 315 AAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
              V   E   Q +++ P   LA Q  E +    +  ++    + G      ++  L++ 
Sbjct: 64  CETVDWEENKPQVLVLVPTRELAIQVKEDLMNIGRLKRVKATAVYGKASFDTQKSELKQ- 122

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHV 423
              ++HI++GT     D +Q           L+L   DE    G   ++           
Sbjct: 123 ---KSHIVVGTPGRVLDHLQKGTFKVEKIDCLVLDEADEMLNMGFADQV---------EA 170

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           ++       +TL+ ++    +I +I      +     VI         I +  V + E K
Sbjct: 171 IINFLPAERQTLLFSATMPKEIERIASFYMKQDKQSIVIETTELSKPKIIQSSVKVQEDK 230

Query: 484 KAYWICPQI---EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
           K   +   +          F +  E  N+L+     +   I  IHG M   D+ SVMD F
Sbjct: 231 KEQQLLDLLTVENADSCMIFCNTQEAVNNLYTFLNKAGLPIDKIHGGMVQEDRFSVMDDF 290

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + G  + L+AT V   GID+ + + ++  +      + +H+  GR GR  +    + L  
Sbjct: 291 RQGRFRYLVATDVAARGIDIENVTHVVNFDVPVEKESFVHR-TGRTGRAGKTGMALTLVT 349

Query: 598 PP 599
           P 
Sbjct: 350 PK 351


>gi|118480482|ref|YP_897633.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196045537|ref|ZP_03112768.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225867435|ref|YP_002752813.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|229187683|ref|ZP_04314819.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BGSC 6E1]
 gi|118419707|gb|ABK88126.1| ATP-dependent RNA helicase DbpA [Bacillus thuringiensis str. Al
           Hakam]
 gi|196023744|gb|EDX62420.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225790635|gb|ACO30852.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|228595751|gb|EEK53435.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BGSC 6E1]
          Length = 481

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 142/378 (37%), Gaps = 40/378 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  ++ L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   
Sbjct: 12  SKEVRRALTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+++ P   LA Q  E I    +  +I    I G  P A ++  L++    
Sbjct: 66  VEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ---- 121

Query: 375 QAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
           + HI++GT     D I+           L++   DE    G   ++   + +  T    +
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT       L+       + I  K AG     I+  +  +   +++     V   E 
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIEN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I  + +E  +  +R                   IHG M   D+  VM+ F+ G  
Sbjct: 242 PDSCIIFCRTQENVDHVYRQ--------LNRVNYPCDKIHGGMVQEDRFGVMEDFRKGKF 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + L+AT V   GID+ + + +I  +      + +H+  GR GR       I    P   +
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYEDR 352

Query: 603 NSYTRLSVLKNTEDGFLI 620
                 + +     GF I
Sbjct: 353 FLEEIEAYI-----GFAI 365


>gi|114763012|ref|ZP_01442442.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Pelagibaca bermudensis HTCC2601]
 gi|114544336|gb|EAU47344.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. HTCC2601]
          Length = 727

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 96/452 (21%), Positives = 164/452 (36%), Gaps = 61/452 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAG-------G 322
           + T  QE+     LQ          ++    GSGKT+   +A+A  +  EAG        
Sbjct: 16  TLTPVQEAVTNPDLQ------TSDLLVSAQTGSGKTVGFGLAIAPTLLDEAGMLGEASLP 69

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+AP   LA Q    ++         V    G M     R+ALER     AHI++GT
Sbjct: 70  LALIVAPTRELAFQVKRELEWLYAKAGARVVSCVGGMDMRDERRALER----GAHIVVGT 125

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP 432
                D IQ           ++L   DE    G ++ L   L +       LL +AT  P
Sbjct: 126 PGRLVDHIQRGSFDMSALRAIVLDEADEMLDLGFREDLEFMLGEAPEERRTLLFSATVPP 185

Query: 433 RTLVLTSLGDIDISKITE-----KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
               L  L   D  ++T      + A        +   +  + +I  L+   ++    + 
Sbjct: 186 MIATLAQLYQRDAVRVTTISERSQHADITYQALRVAQHDAENAIINMLRYHDAQNAIVFA 245

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                      N R+ V R  +   +   ++  + G +S  ++   + + ++G  K+ +A
Sbjct: 246 -----------NTRATVNRLTARFSNRGFAVVCLSGELSQTERSHALQAMRDGRAKVCVA 294

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I           LH+  GR GR        L+  P L+K +   
Sbjct: 295 TDVAARGIDLPNLELVIHAELPSNTEGLLHR-SGRTGRAGRKGISALVVPPKLTKKAERL 353

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L   K T +       +   R++ E L           +A P   + + E     A  +L
Sbjct: 354 LKWAKVTAEWIEAPSAEEILRRDEERL-----------LADPTWSEEITEDEAGFAARLL 402

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
            +     S    +   L      + A + + A
Sbjct: 403 AE----QSPETVAAAYLRLYRDRHSAPEELSA 430


>gi|72392369|ref|XP_846985.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|62359340|gb|AAX79779.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
 gi|70803015|gb|AAZ12919.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
 gi|261330174|emb|CBH13158.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 569

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 135/384 (35%), Gaps = 41/384 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +     I Q  +     SPT  Q  A   +L      N    +     GSGKT+  ++  
Sbjct: 79  LVAPDTIHQAFIDLGYKSPTPIQSIAWPILL------NSRDLVGVAKTGSGKTMGFMVPA 132

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRR 365
           A  + A        G  A+++AP   LA Q  E  +K  +    I    + G  P+  + 
Sbjct: 133 ALHIMAQPPIRVGEGPIALVLAPTRELAVQIEEETRKVLRRVPTITTACLYGGTPKGPQI 192

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLT 415
           +AL        H+ I T     D ++           L+L   D     G   Q R    
Sbjct: 193 RALRA----GVHVCIATPGRLIDLLEIRAANLLRVTFLVLDEADRMLDMGFEVQIRKICQ 248

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKI---TEKPAGRKPIKTVIIPINRIDEVI 472
           Q       L+ +AT       L +    D  ++   +E       +   +  +   D+  
Sbjct: 249 QIRKDRQTLMFSATWPQEIRNLAASFQRDFIRVHVGSEDLIANADVTQHVSVVEDYDKQR 308

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
              +++   GK+   I  + +       R+     +SL      S+  IHG      ++ 
Sbjct: 309 RLEEILQKVGKQRVLIFVKTK-------RTADSLHHSLQRLIGGSVMAIHGDKEQSQRDY 361

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           V+D F+     +L+AT V   G+D+ +  ++I  +        +H++ GR GR  +    
Sbjct: 362 VLDRFRRDERSVLVATDVAARGLDIKNLDVVINFDMPTNIEDYVHRI-GRTGRAGQRGDA 420

Query: 593 ILLYH-PPLSKNSYTRLSVLKNTE 615
                    SK     + +L+   
Sbjct: 421 YTFVSGADPSKTVRDLIDILRRAN 444


>gi|317132682|ref|YP_004091996.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315470661|gb|ADU27265.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 435

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 133/363 (36%), Gaps = 38/363 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---------EAGG 322
            PT  QE +I  IL+      +   +     G+GKT    + +   +             
Sbjct: 23  QPTPIQEQSIPYILE------KRDLLGTAQTGTGKTAAFAVPILDLLCREHGQSTGSRHI 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A++++P   LA Q  E   +Y++   +   +I G + Q  +   L         I++ T
Sbjct: 77  RALVLSPTRELAIQIKESFDQYSRFLHLRNTVIFGGVSQIPQVSRLRE----GVDILVAT 132

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      +    +   ++DE  R      +         H ++       +TL+ 
Sbjct: 133 PGRLLDLMNQRHVDLSHVSYFVLDEADRMLDMGFIHDV------HKVVEKLPQNRQTLLF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    DI+++ +K   + P +  + P++   E +E+    + +  K + +   ++    
Sbjct: 187 SATMPPDIARLADK-LLKNPAQVSVAPVSSTAETVEQKLFYVDKKNKKHLLVHLLKTADM 245

Query: 498 SNFRSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +           N + EH   +      IHG  S   ++  +  FK+    +L+AT + 
Sbjct: 246 ESVLVFSRTKHGANKIVEHLEKAGIPSKAIHGNKSQSARQQALREFKSRKIHVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV + S +I  +  +     +H++ GR GR  +                 T   ++
Sbjct: 306 ARGIDVTELSHVINYDLPNEPETYVHRI-GRTGRAGQSGMAFSFCDEEEHDYLRTIERLI 364

Query: 612 KNT 614
              
Sbjct: 365 GKH 367


>gi|148706200|gb|EDL38147.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Mus musculus]
          Length = 639

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 144/379 (37%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + +   G          
Sbjct: 183 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAMKE 236

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 237 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLER- 295

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAP- 421
                H+++ T     D ++  K        L+L   D     G + Q  ++ ++ T P 
Sbjct: 296 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 352

Query: 422 ----HVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +  +D+    
Sbjct: 353 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDK-RSF 410

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +   +       +   IHG  S  D+E  +
Sbjct: 411 LLDLLNATGKDSLTLVFVETKK------GADSLENFLFQERYACTSIHGDRSQKDREEAL 464

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 465 HQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 523

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 524 FFNERNLNITKDLLDLLVE 542


>gi|300692366|ref|YP_003753361.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
           solanacearum PSI07]
 gi|299079426|emb|CBJ52099.2| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
           solanacearum PSI07]
          Length = 471

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 82/460 (17%), Positives = 171/460 (37%), Gaps = 60/460 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 29  LVQLGYTDMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARRFD 82

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    + V  + G  P   +  +LE      AH+++
Sbjct: 83  VQAMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEH----GAHVVV 138

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D ++   L L      ++DE  R                  ++    P  +TL
Sbjct: 139 GTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIA------TVVRQCPPERQTL 192

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++ +       K V +     D  I +    +++ ++ + +   ++  
Sbjct: 193 LFSATYPDGIAKLSRQILRNP--KEVKLEERHDDSKIRQRFYEVTDDERLHAVGLLLKHY 250

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 251 RPVSTLAFCNTKQQCRNLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATD 310

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L          +   
Sbjct: 311 VAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQDGWALSLASMDEMGRVGSIEQ 369

Query: 610 VLKNTEDGFLIAEED-------------LKQRK-------EGEILG--IKQSGMPKFLIA 647
            L    +   +AE D             L+           G++LG     +G     I 
Sbjct: 370 ALGREVEWHRLAELDTGSDAPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFRGDQIG 429

Query: 648 QP--ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +       + + + R  A+  L +  +   V+G+ +R+ L
Sbjct: 430 KINATEFSTYVAVERGIARDALRKL-NAGKVKGKKVRVRL 468


>gi|260102329|ref|ZP_05752566.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
 gi|260083862|gb|EEW67982.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
 gi|328463453|gb|EGF35104.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus MTCC
           5463]
          Length = 503

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 77/419 (18%), Positives = 151/419 (36%), Gaps = 36/419 (8%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            F   T  QE  I   LQ          I Q   G+GKT    + +  +++   +A+   
Sbjct: 20  GFEEATPIQEQTIPLALQGKDV------IGQAQTGTGKTAAFGLPILQSIDKKEKAIQAI 73

Query: 329 -------PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
                  P   LA Q  E + +  ++    V+++ G      + ++L++       I++G
Sbjct: 74  IQAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKQ---HAPSILVG 130

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D ++   + L  V+        + L +        +L   A    +TL+ ++  
Sbjct: 131 TPGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIKDIESILKY-AKNCKQTLLFSATM 189

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ES 498
              I +I EK   + P    I       ++I++  V   E +K   +C  I+ +      
Sbjct: 190 PKPILRIGEKFM-KDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGPDLAL 248

Query: 499 NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F     R + L     +     A IHG +S   + +V+  F+ G   +L+AT V   G+
Sbjct: 249 VFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVAARGL 308

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+   + +   +      + +H++ GR GR  +    +    P       T   + K   
Sbjct: 309 DISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGQNGVSVTFVTPNEIGYMRTIEQLTKKKM 367

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
               +  +D   R +   L   ++ +   +      +        +DA  +L     L 
Sbjct: 368 SPISLPTDDQALRGQ---LKQAKAEIEDLMKGDLGKYT-------QDASELLDNYSALD 416


>gi|124002116|ref|ZP_01686970.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
 gi|123992582|gb|EAY31927.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
          Length = 571

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 132/346 (38%), Gaps = 36/346 (10%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
           + + F  PT  QE AI  +L           +     G+GKT    + +  +++      
Sbjct: 18  QELGFEKPTPIQEQAIPYLLT-----EETDLLAFAQTGTGKTAAFSLPLLESIDPDSKQI 72

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+ P   L  Q    I+ + +  +I    + G      +  AL+R      HI++GT
Sbjct: 73  QALILCPTRELCLQIARDIQSFAKFMKIRTTAVYGGASIDKQIDALKR----GVHIVVGT 128

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP 432
                D I+  KL L  +        DE    G +Q L   L         LL +AT   
Sbjct: 129 PGRSLDLIKRKKLKLEQIQWLVLDEADEMLNMGFKQELDAILATTPKEKQTLLFSATMPQ 188

Query: 433 R--TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWIC 489
               +    +       + ++ +G K +      +   D      ++  ++        C
Sbjct: 189 ELIRIAEQYMHQPKKISVGQRNSGAKNVSHEFYVVQPRDRYQALKRIADINPHIYGIVFC 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
               E K+   + + + +N+           +HG +S   ++ VM  F++   ++L+AT 
Sbjct: 249 RTRRETKDIANKLIQDGYNA---------DALHGDLSQAQRDHVMGRFRSRHLQILVATD 299

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           V   G+DV + + +I  N        +H+  GR GR  +    +L+
Sbjct: 300 VAARGLDVDEITHVINFNLPDDLEVYIHR-SGRTGRAGKTGVSLLI 344


>gi|78184025|ref|YP_376460.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
 gi|78168319|gb|ABB25416.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
          Length = 458

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 131/361 (36%), Gaps = 36/361 (9%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-----GQA- 324
            SPT  Q   I ++LQ          +     G+GKT   ++ +   + A       Q  
Sbjct: 45  LSPTPIQALTIPEVLQGKD------IMASAQTGTGKTAAFILPIIELLRAEDKPKRYQVH 98

Query: 325 -VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA Q     K YT+   +  + + G +    + K L+    G   I++ T 
Sbjct: 99  SLVLTPTRELAAQVEASAKAYTKYLALRSDAVFGGVSIRPQVKRLQ----GGVDILVATP 154

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D      I++  L ++++DE  R      ++  +K       ++   P  R  ++ 
Sbjct: 155 GRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKK-------VIEYLPKNRQNMMF 207

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S       K         P++      N+    IE L       +K   +C  I+  K  
Sbjct: 208 SATFSTPIKKLALGLLNDPVEIKASVQNQAAPTIEHLVHPCDMARKVDLLCHLIKTNKWK 267

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +   ++   +  H     + IHG  S   +   ++ FKNG  K+L+AT +  
Sbjct: 268 QVLVFARTKHGADKVVKILCHQHMRASAIHGNKSQGARTRALEGFKNGDIKILVATDIAA 327

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+     +I  +  +     +H++ GR GR  E    I L     +         + 
Sbjct: 328 RGIDIHQLPYVINLDLPNVAEDYVHRI-GRTGRAGEAGHAISLVAAEEALLLKAIEKFIG 386

Query: 613 N 613
           N
Sbjct: 387 N 387


>gi|116628255|ref|YP_820874.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116101532|gb|ABJ66678.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus
           LMD-9]
          Length = 527

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 127/343 (37%), Gaps = 34/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     +   E   QA+++A
Sbjct: 23  QPSPIQELTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLDKIRTEENTIQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ ++  + V  + G      + KAL       AHI++GT     D
Sbjct: 77  PTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLV 436
            I+   L L  +        DE    G        +++       LL +AT     + + 
Sbjct: 133 LIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEKRQTLLFSATMPDAIKRIG 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +  + D +  KI  K      +    I +   ++     +++  +  +   +  +     
Sbjct: 193 VQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPELSIVFGRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +   S    IHG +    +  ++  FKNG   +L+AT V   G+D
Sbjct: 249 ----KRRVDELTRGLKLRGSRAEGIHGDLDQNKRLRIIRDFKNGQIDILVATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +   + +   +      + +H++ GR GR  +    I    P 
Sbjct: 305 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGQSGQSITFVSPN 346


>gi|294497529|ref|YP_003561229.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294347466|gb|ADE67795.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 481

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 78/363 (21%), Positives = 131/363 (36%), Gaps = 39/363 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           PT+ Q   +   L+          +++   GSGKT    I +   V   E   QA+++ P
Sbjct: 27  PTEVQSKVLPIALE------ERDVVVKSQTGSGKTASFGIPLCELVNWEENKPQALVLTP 80

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I    +  +I    + G  P A ++  L++    + HI++GT     D 
Sbjct: 81  TRELAAQVKEDITNIGRFKRIKAAAVYGKSPFAKQKVELKQ----KTHIVVGTPGRVLDH 136

Query: 390 IQYYKLILVIV--------DEQHRFGV-QQRLKLTQKATAPHVLLMTATPIPRT---LVL 437
           I+   L L  +        DE    G   Q   + Q   +  V ++ +  +P     L  
Sbjct: 137 IEKETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQHLPSERVTMLFSATLPEDIEELSR 196

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
             +      +I         I   +I +    +      V   E   +  I  + +E+  
Sbjct: 197 KYMKKPVDVEIKANGLTTSTIDHSVISVENERKFELLKDVTTVENPDSCIIFCRTQEQ-- 254

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                 V       + F      IHG M   D+  VM+ FK G  + L+AT V   GID+
Sbjct: 255 ------VNTLLDDLDDFGYPCDKIHGAMVQEDRFEVMNDFKKGKFRYLVATDVAARGIDI 308

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            + + +I  +      + +H+  GR GR  +    I    P   +        +     G
Sbjct: 309 DNITHVINYDLPLEKESYVHR-TGRTGRAGKKGKAITFVTPYEKRMLSEIEEYI-----G 362

Query: 618 FLI 620
           F I
Sbjct: 363 FSI 365


>gi|42521946|ref|NP_967326.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574476|emb|CAE77980.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus
           HD100]
          Length = 412

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 143/397 (36%), Gaps = 42/397 (10%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 ++   + + +  N  F  T  Q  AI  IL+          +     G+GKT  
Sbjct: 1   MKFEKFHLSEDLLRNLTDNGFFRTTDIQYKAIPSILKGEDV------LAIAQTGTGKTAA 54

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
             I +   +          G + +I+ P   LAQQ  E   K +++T++    + G +  
Sbjct: 55  FAIPIINMIHTEKSSKRAIGIKCLILVPTRELAQQIGEVFNKLSKHTKVKPFALFGGV-- 112

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             +   ++++  G   I+I T     D I            L+L   D     G    + 
Sbjct: 113 -EQDAQIQKLQDG-IDILISTPGRMFDLIAQGHVDISRIETLVLDEADHMLDLGFIDDIT 170

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
             ++           T   +TL  ++  + +I K+         I+  I P + + + I 
Sbjct: 171 SVKR---------KLTKRHQTLFFSATINPEIKKLAFSQVRSSAIRIQISPEDPVSKNIT 221

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSD 527
              + +    K +++   + +  +  F      R   ER              +HG    
Sbjct: 222 HFVMHVEMDDKRFFLAEYLRQNPDGKFIIFVRTRVRAERVAKALARVEVQSLTLHGEKDQ 281

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            D+  VM +F+ G CK+LIAT +   GID+ D + +I  +        +H++ GR GRG 
Sbjct: 282 TDRAEVMKTFRKGDCKILIATDLSARGIDIPDVTHVINYDLPEKPENYVHRI-GRTGRGF 340

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
                +               S++    +   ++++D
Sbjct: 341 NKGVAVSFCSTEEKPLLAEVESLITKKIEVLKVSKQD 377


>gi|313225950|emb|CBY21093.1| unnamed protein product [Oikopleura dioica]
          Length = 485

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 75/363 (20%), Positives = 134/363 (36%), Gaps = 40/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q  +    L        M  I     GSGKTL  ++     + A        G  
Sbjct: 77  TPTTIQSQSWPIAL----SGADMQGI--ARTGSGKTLAFVLPSIIHIMAQPDLRPGDGPV 130

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AVI+AP   LA+Q  E  +++ +   +    + G   +  +  ALER     AHI++   
Sbjct: 131 AVILAPTRELAKQVQEVAEQFGKPCGVNTVAVYGGADKRAQIGALER----GAHIVVACP 186

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D IQ  +        LIL   D     G + +++    Q       L+ +AT    
Sbjct: 187 GRLLDLIQSGRTNLHRTTFLILDEADRMLDMGFEPQIRKIVGQIRQDRQTLMFSATWPKE 246

Query: 434 TLVLTSLGDIDISKI---TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
              L S      ++I    ++      I+ V+  ++  D+ +               +  
Sbjct: 247 IQKLASDFMKTPTQIFIGNQELTANPNIEQVVEVVSDFDKAMRFNYWFQQITSPKILVFT 306

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   + +   +       +     A IHG     ++E V+  F+NG   +L+AT V
Sbjct: 307 --------DTKRDCDNLAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISVLVATDV 358

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D   +I  +        +H++ GR  RGE+    I       +K++   + +
Sbjct: 359 AARGLDIDDIGTVINYDFPSQLEDYVHRI-GRTARGEKKGKSISFITAKSAKHASALVKL 417

Query: 611 LKN 613
           L+ 
Sbjct: 418 LEQ 420


>gi|228921162|ref|ZP_04084492.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838478|gb|EEM83789.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 458

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPASSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKLR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 VSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|228966804|ref|ZP_04127848.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228792903|gb|EEM40461.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 266

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 87/227 (38%), Gaps = 19/227 (8%)

Query: 12  PLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVT 71
           P++  +G+G + S  L ++             LL + P  + D      ++E+  +  VT
Sbjct: 8   PVTDVKGIGGETSELLHEM------GIYTVSHLLEHFPYRYEDY-AMKDLAEVKHDERVT 60

Query: 72  ITGYISQHSSFQLQKRRPYKILLNDGTGE--ITLLFFYRKTEMLKNVFFEGRKITVTGKI 129
           + G +      Q   ++  ++ +    G   IT + F R     K        +T+TGK 
Sbjct: 61  VEGKVHSAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNR--PYYKQKLTLDETVTITGKW 118

Query: 130 KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRL-PVLPEW 188
            + +  I +       H    V    +E VYS+   L+V   ++ I +AL      + E 
Sbjct: 119 DQHRQTIAVS----ELHFGPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEV 174

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLA 235
           +   LL +       EA   +H P   +D      AR R  Y+E   
Sbjct: 175 LPDGLLGRYKLLPRYEALKALHFPVGQEDL---KQARRRFVYEEFFF 218


>gi|189347343|ref|YP_001943872.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
 gi|189341490|gb|ACD90893.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
          Length = 610

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 146/413 (35%), Gaps = 44/413 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           L  + +  PT  Q   I  +L+          + Q   G+GKT    + + + +   +  
Sbjct: 39  LEEVGYEKPTPIQAQTIPLLLEGRDV------LGQAQTGTGKTAAFALPVLSNIVLSKTE 92

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  E   +Y +      V  I G      + + L+R      H+++
Sbjct: 93  PQALVLTPTRELAIQVAEAFHRYAEYLKGFHVVPIYGGQDYGTQLRMLKR----GVHVVV 148

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTAT- 429
           GT     D ++           L+L   DE  R G    ++    Q   +  V L +AT 
Sbjct: 149 GTPGRVMDHMRRGSLSLSSLQCLVLDEADEMLRMGFIDDVEWILDQTPESRQVALFSATM 208

Query: 430 --PIPRTLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
             PI R          ++     T      +    ++   +++D +   L+    +G   
Sbjct: 209 PAPIRRIAQKHLKSPAEVIIQNKTTTVETIRQRYWIVGGSHKLDVLTRILEFEPFDGILI 268

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +                 +E    L     ++ + ++G M+   +E  +D  K+G+  ++
Sbjct: 269 FV----------RTKTMTLELAEKLQARGYAA-SALNGDMAQNQRERTVDQLKDGSLSIV 317

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           IAT V   G+DV   S +I  +      + +H++ GR GR       IL   P      Y
Sbjct: 318 IATDVAARGLDVDRISHVINYDIPSDTESYVHRI-GRTGRAGRSGEAILFVSPREKNMLY 376

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
                 +   +   +     +   +  +   KQ           E +  LLE 
Sbjct: 377 AIEKATRKRIELMELPST--EIINDKRVAKFKQRITDTIAAEDLEFYTRLLEQ 427


>gi|95928576|ref|ZP_01311323.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95135366|gb|EAT17018.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 587

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 76/423 (17%), Positives = 162/423 (38%), Gaps = 55/423 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ +  P+  QE +I  + +          +     G+GKT    + +   ++     
Sbjct: 19  LTDLGYQQPSPIQEQSIPILNEG------HNLLGTAQTGTGKTAAFGLPLLGKIDPSKKY 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E ++ + +    + V  + G  P   + KAL         +++
Sbjct: 73  PQMLVLAPTRELAIQVSEALQSFAKYLPKVKVLAVYGGQPMYQQLKALHD----GVQVVV 128

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++   L L  +        DE  R G  + ++    AT P           
Sbjct: 129 GTPGRIMDHMERKSLRLEQISAVVLDEADEMLRMGFIEDVETILGATPPRCQCA------ 182

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
              + ++     I ++ E+  G      +    + +D++ +  + ++    + + +  ++
Sbjct: 183 ---LFSATMPPAIRRVAERYLGDAQEVQIASRTSTVDQIEQ--RYLMLRANQKFDVLTRL 237

Query: 493 EEKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            E +E +        ++         E    + A ++G +S   +E  +   KNG+  ++
Sbjct: 238 IEAQEIDGTIVFVRTKTATTELAERLEARGYNAAPLNGDLSQQVRERTIGRLKNGSLDIV 297

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           IAT V   G+DV   S +   +      A +H++ GR GR     + IL   P   +   
Sbjct: 298 IATDVAARGLDVERISHVFNYDIPFDTEAYIHRI-GRTGRAGRTGTAILFVTPQERRLLK 356

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           +     K           D+K     ++    Q G  +    + ++HD+L + +  D + 
Sbjct: 357 SIERATK----------RDIK---PIDVPTSDQIGARRIATFKKQIHDTLDQYSLADLRE 403

Query: 666 ILT 668
           +LT
Sbjct: 404 LLT 406


>gi|26988598|ref|NP_744023.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|148549053|ref|YP_001269155.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|24983373|gb|AAN67487.1|AE016375_5 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
 gi|148513111|gb|ABQ79971.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
 gi|313499970|gb|ADR61336.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida BIRD-1]
          Length = 559

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 144/372 (38%), Gaps = 44/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ +I  IL           I Q   G+GKT    + +   ++      QA+I+A
Sbjct: 28  EPSAIQQQSIPIILAGHD------MIGQAQTGTGKTAAFALPILNKIDVSKREPQALILA 81

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y  Q   + V  + G  P   + +A+       A I++ T     
Sbjct: 82  PTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRN----GAQIVVATPGRLC 137

Query: 388 DSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++  +        L+L   DE  + G    L++   A              +T++ ++
Sbjct: 138 DHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPA---------TRQTVLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I  I E+   R+P    I    +    IE+  +++   +K   +   +E ++   
Sbjct: 189 TLPSSIRSIAERHL-REPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLEVEEFDA 247

Query: 500 FRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             + V          +  E      A ++G ++   +E V+DS K+G   +++AT V   
Sbjct: 248 LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV   + +   +  +   + +H++ GR GR       +LL  P         L V++ 
Sbjct: 308 GLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGRDGRALLLVTPRE----RRMLQVIER 362

Query: 614 TEDGFLIAEEDL 625
              G  +AE  L
Sbjct: 363 VT-GQKVAEARL 373


>gi|265754229|ref|ZP_06089418.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_33FAA]
 gi|263234938|gb|EEZ20493.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_33FAA]
          Length = 434

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 134/344 (38%), Gaps = 34/344 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQAVI 326
           +PT  QE AI  +L+          +     G+GKT    I +   +     + G +A+I
Sbjct: 23  TPTPIQEQAIPVLLKGKD------LLGCAQTGTGKTAAFAIPLIQRLYQSDHKKGIKALI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   +Y + T +   +I G +PQ  +  AL+R       ++I T    
Sbjct: 77  LTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALKR----GVQVLIATPGRL 132

Query: 387 QD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            D      I    L   ++DE  R      +   +K      +L       +TL  ++  
Sbjct: 133 LDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKK------VLKLIPARRQTLFFSATM 186

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC-----PQIEE-K 495
             +I K+ +      P K  + P++   + I++    + + +K   +      P+IE   
Sbjct: 187 PSEIEKLADS-MLTNPKKVEVTPVSSTVDTIQQSVYFVEKKEKKDLLLHLLKNPEIESVL 245

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  +   ++   +          IHG  S   ++  + +FK+ T ++LIAT +   GI
Sbjct: 246 IFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDIAARGI 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV   S +I     +     +H++ GR GR       I      
Sbjct: 306 DVNQLSHVINYELPNISETYVHRI-GRTGRAGHDGIAISFCESE 348


>gi|299822345|ref|ZP_07054231.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
 gi|299815874|gb|EFI83112.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
          Length = 512

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 127/342 (37%), Gaps = 23/342 (6%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
             + F   T  QE  I   L           I Q   G+GKT    + +   ++      
Sbjct: 20  NRMGFEEATPIQEKTIPLGLAGKD------LIGQAQTGTGKTAAFGLPIINKIDQKNNNI 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+AP   LA Q  E + K + +    V  + G    + + ++L++       II+GT
Sbjct: 74  QALIIAPTRELAIQVSEELYKLSYDKHARVLAVYGGSDISRQIRSLKK----NPQIIVGT 129

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D I    L L  V+        + L +        +L  +     +TL+ ++   
Sbjct: 130 PGRMLDLINRRVLKLENVETLVLDEADEMLNMGFIDDIEAILK-SVPSERQTLLFSATMP 188

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESN 499
             I +I E+     P    I        +IE+  V + E +K   +   ++ +       
Sbjct: 189 DPIRRIAERFM-HSPELVRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAII 247

Query: 500 FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F     R + L             IHG ++   + SV+  FK G   +L+AT V   G+D
Sbjct: 248 FGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLD 307

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +   + +   +      + +H++ GR GR  +    I    P
Sbjct: 308 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGMAITFVQP 348


>gi|229178806|ref|ZP_04306167.1| ATP-dependent RNA helicase [Bacillus cereus 172560W]
 gi|228604682|gb|EEK62142.1| ATP-dependent RNA helicase [Bacillus cereus 172560W]
          Length = 458

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PDSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     +I  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFIMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|227501650|ref|ZP_03931699.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
 gi|306835824|ref|ZP_07468821.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
 gi|227077675|gb|EEI15638.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
 gi|304568298|gb|EFM43866.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
          Length = 623

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 73/388 (18%), Positives = 143/388 (36%), Gaps = 41/388 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q   I  +++          +     G+GKT    + + + ++      QA+++A
Sbjct: 77  TPSPIQAETIPILMEGRDV------VGLAQTGTGKTAAFALPVLSQLDPQARHPQALVLA 130

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  + + +    I V  I G      +   L R     A +I+GT     
Sbjct: 131 PTRELALQVADAFQSFAETLKGIEVLPIYGGQAYGIQLSGLRR----GAQVIVGTPGRVI 186

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++   L        +L   DE    G Q+ ++           ++ +TP  + + L S
Sbjct: 187 DHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVE----------RILESTPDRKQVALFS 236

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               +  +   K     P +  +    R ++ I++  +++    K       +E      
Sbjct: 237 ATMPNAIRRLSKQYLHNPAEVTVKSERRTNDNIKQRFLLIPHRAKMDAFTRILEVITYDA 296

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   E           S A I+G ++   +E  +D  K+G   +L+AT V   
Sbjct: 297 IIVFCRTKHETEEVAEALRDRGYSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 356

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV   + ++  +  +   + +H++ GR GR       IL   P   +   +   V   
Sbjct: 357 GLDVERITHVVNFDIPNDTESYVHRI-GRTGRAGRSGEAILFVTPRERRMLRSIERVTNA 415

Query: 614 TEDGFLIAEED--LKQRKEGEILGIKQS 639
             +   +   D   ++RKE     I QS
Sbjct: 416 RLEEMDLPSVDEVNEKRKEKFAQAITQS 443


>gi|212690559|ref|ZP_03298687.1| hypothetical protein BACDOR_00044 [Bacteroides dorei DSM 17855]
 gi|212666908|gb|EEB27480.1| hypothetical protein BACDOR_00044 [Bacteroides dorei DSM 17855]
          Length = 434

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 134/344 (38%), Gaps = 34/344 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQAVI 326
           +PT  QE AI  +L+          +     G+GKT    I +   +     + G +A+I
Sbjct: 23  TPTPIQEQAIPVLLKGKD------LLGCAQTGTGKTAAFAIPLIQRLYQSDHKKGIKALI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   +Y + T +   +I G +PQ  +  AL+R       ++I T    
Sbjct: 77  LTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALKR----GVQVLIATPGRL 132

Query: 387 QD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            D      I    L   ++DE  R      +   +K      +L       +TL  ++  
Sbjct: 133 LDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKK------VLKLIPARRQTLFFSATM 186

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC-----PQIEE-K 495
             +I K+ +      P K  + P++   + I++    + + +K   +      P+IE   
Sbjct: 187 PSEIEKLADS-MLTNPKKVEVTPVSSTVDTIQQSVYFVEKKEKKDLLLHLLKNPEIESVL 245

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  +   ++   +          IHG  S   ++  + +FK+ T ++LIAT +   GI
Sbjct: 246 IFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDIAARGI 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV   S +I     +     +H++ GR GR       I      
Sbjct: 306 DVNQLSHVINYELPNISETYVHRI-GRTGRAGHDGIAISFCESE 348


>gi|221059063|ref|XP_002260177.1| RNA helicase [Plasmodium knowlesi strain H]
 gi|193810250|emb|CAQ41444.1| RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 398

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 126/341 (36%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+  IK IL           I Q   G+GKT   +I+    +       QA+I+A
Sbjct: 45  KPSAIQQRGIKPILNGYDT------IGQAQSGTGKTATFVISSLQLINYDVVACQALILA 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + +       ++      G          L++      H+++GT     D
Sbjct: 99  PTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQ----GVHMVVGTPGRVYD 154

Query: 389 SIQYYKLI--------LVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
            I    L         L   DE    G + ++     +      V L +AT     L LT
Sbjct: 155 MIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVALFSATMPQEILELT 214

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D   I  K      + I+   + + + +  ++ L          Y      +   
Sbjct: 215 TRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTL-------CDLYETLTITQSII 267

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+       +   +++ +HG M   D++ +M  F++G+ ++L+ T ++  GID
Sbjct: 268 YCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGID 327

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   S++I  +        +H++ GR GR       I    
Sbjct: 328 VQQVSLVINYDLPTSPDTYIHRI-GRSGRFGRKGVAINFVT 367


>gi|170578019|ref|XP_001894230.1| eukaryotic initiation factor 4A [Brugia malayi]
 gi|158599270|gb|EDP36940.1| eukaryotic initiation factor 4A, putative [Brugia malayi]
          Length = 413

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 68/351 (19%), Positives = 135/351 (38%), Gaps = 42/351 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           +    F  P+  Q+ AI      +    +   I Q   G+GKT    +A+   ++     
Sbjct: 59  IYAFGFEKPSAIQQRAI------IPCTKKRDVIAQAQSGTGKTATFSVAVLQNIDETIPE 112

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA++MAP   LAQQ  + +    +   +      G       ++ LE       H+++G
Sbjct: 113 VQALVMAPTRELAQQIQKVMLSLGEYLGVKCHASIGGTNVRDDQRKLES----GVHVVVG 168

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I    L        +L   DE    G ++++    K     V         +
Sbjct: 169 TPGRVNDMITRQSLQTNNIKMFVLDEADEMLSRGFKEQIYDVFKCMPSDV---------Q 219

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            ++L++    ++ ++T +     PI+ ++    R +  +E ++       K   +C    
Sbjct: 220 VVLLSATMPSEVLEVTNRFMN-DPIRILV---KREELTLEGIRQFYINEWKFETLCDLYS 275

Query: 494 EKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                      N R  V+   +       +++ +HG M   +++ +M  F++G+ ++LI 
Sbjct: 276 TVNVTQAVIFCNTRRKVDYLAAQMSKEKYTVSCMHGEMEQNERDVIMREFRSGSSRVLIT 335

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           T ++  GIDV   S++I  +        +H++ GR GR       I     
Sbjct: 336 TDLLARGIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFITE 385


>gi|313159432|gb|EFR58795.1| putative DEAD-box ATP-dependent RNA helicase CshA [Alistipes sp.
           HGB5]
          Length = 653

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 138/343 (40%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +PT  Q+  I  +L           I Q   G+GKT    + +  ++E      QA+I+ 
Sbjct: 27  TPTAIQKLTIPHLLT-----KTNDIIAQSQTGTGKTAAYGLPILQSLEPARGPVQAIILV 81

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E +  Y +  ++ +  I G    + + + L +       I++GT    +D
Sbjct: 82  PTRELALQAAEELLSYNREKRLSITAIYGGAAMSEQLRRLAK----GVDIVVGTPGRVRD 137

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKAT--APHVLLMTATPIPRTLVLT 438
            I+   L L  V        DE    G  + ++     T     VLL +AT   R + L+
Sbjct: 138 HIRRGTLKLENVRYLVLDEADEMLNMGFVEDVEEIMSHTSEERRVLLFSATMPERIIRLS 197

Query: 439 SLGDID--ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                D  I ++  K       + +   +   D+     +++  E +    I  + +   
Sbjct: 198 KTYMRDTEIVRVENKQLTTDLTEQIYFEVREADKFDALTRIIDVEPEFYGIIFARTKIGA 257

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           +       E  + L     ++  ++HG +S   +E ++  F++ +  +L+AT V   GID
Sbjct: 258 D-------ETVSRLAARGYAA-EVLHGDVSQAQREKILRKFRDRSVNILVATDVAARGID 309

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V + + +I  +      + +H++ GR GR  +  + I    P 
Sbjct: 310 VGNLTHVINYSLPQDSESYVHRI-GRTGRAGKQGTAITFVSPS 351


>gi|146307171|ref|YP_001187636.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145575372|gb|ABP84904.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 560

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 75/345 (21%), Positives = 134/345 (38%), Gaps = 39/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q  AI  IL           I Q   G+GKT    + + + ++      Q +I+A
Sbjct: 28  EPSPIQSQAIPVILAGHD------MIGQAQTGTGKTAAFALPLLSKIDPAKREPQVLILA 81

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y+ Q   + V  + G  P   + KAL       A II+ T     
Sbjct: 82  PTRELALQVATAFETYSKQMPGVNVVAVYGGAPMGPQLKALRM----GAQIIVATPGRLV 137

Query: 388 DSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++           L+L   DE  + G    L++  +A              ++++ ++
Sbjct: 138 DHLRRDDKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPE---------SRQSVLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I  I EK   R+P    I    +    IE+  +++   +K   +   +E +    
Sbjct: 189 TLPHSIRAIAEKHL-REPQHIKIAAKTQTVSRIEQAHLMIHADQKTNAVLRLLEVEDFDA 247

Query: 500 FRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             + V          S  E      A ++G ++   +E V++S K+G   +++AT V   
Sbjct: 248 LIAFVRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GIDV   + +   +  +   + +H++ GR GR       +LL  P
Sbjct: 308 GIDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGRDGRALLLVTP 351


>gi|114776507|ref|ZP_01451552.1| Superfamily II DNA and RNA helicase [Mariprofundus ferrooxydans
           PV-1]
 gi|114553337|gb|EAU55735.1| Superfamily II DNA and RNA helicase [Mariprofundus ferrooxydans
           PV-1]
          Length = 414

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 130/361 (36%), Gaps = 36/361 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
            PT  Q  +I  IL+          +     G+GKT    + M   +  G +       A
Sbjct: 22  KPTPVQLESIPAILKGRDV------MAAAQTGTGKTAGFTLPMLHLLAQGPRVRANQVRA 75

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + + +Y     +   ++ G +    +   L +       I++ T  
Sbjct: 76  LILVPTRELAGQVGDSVVRYGVRLPLRSAVVFGGVKINPQMMKLRK----GVDILVATPG 131

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      +   +K       ++   P+ R  ++ S
Sbjct: 132 RLLDLHQQNAVRFNQLEILVLDEADRMLDMGFMDELKK-------ILALLPVKRQNLMFS 184

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               D  +   K     P++  + P N     IE     + + +K   +   I++     
Sbjct: 185 ATYSDEIRALAKTIVHHPVEICVNPANSTATTIEHCLYPVDKQQKNALLKKLIKDNDWQQ 244

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   +R     E    S A IHG  S   +   +  FKN   ++L+AT +   
Sbjct: 245 VLVFCKTKQAADRLVRFLEQQAISAAAIHGDKSQGARTRALSEFKNSQVQVLVATDLAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++  +  H     +H++ GR GR       + L              V++ 
Sbjct: 305 GLDIPQLPQVVNYDLPHVAQDYIHRI-GRTGRAGVSGQAVSLVCADEFDELAAVERVIQQ 363

Query: 614 T 614
            
Sbjct: 364 L 364


>gi|37676819|ref|NP_937215.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201363|dbj|BAC97185.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 509

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 134/361 (37%), Gaps = 36/361 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  IL+          +     G+GKT    + +   +  G +       A
Sbjct: 23  TPSPIQLQAIPAILEGKDV------MAAAQTGTGKTAGFTLPILERLAKGPRVRANHIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +  Y+++  +   ++ G +    +   L +     A +++ T  
Sbjct: 77  LILTPTRELAAQVQENVFMYSRHLDLNSAVVFGGVKINPQMLRLRK----GADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYSQNAVKFDQLEVLVLDEADRMLDMGFIRDIRK-------ILALLPAKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     PI+  + P N     +E+        KK   +   I++     
Sbjct: 186 ATFSDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYPADVKKKPAMLAKLIKDGDWRQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGDVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++           +H++ GR GR  E    I L     +   +    +++ 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRI-GRTGRAGETGKAISLVCALEAPELFAIERLIQE 364

Query: 614 T 614
            
Sbjct: 365 L 365


>gi|302782918|ref|XP_002973232.1| hypothetical protein SELMODRAFT_267628 [Selaginella moellendorffii]
 gi|300158985|gb|EFJ25606.1| hypothetical protein SELMODRAFT_267628 [Selaginella moellendorffii]
          Length = 597

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 63/378 (16%), Positives = 124/378 (32%), Gaps = 52/378 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  AI   L           +     GSGKTL     + A +             
Sbjct: 172 KPTPVQRHAIPIALAGRD------LMACAQTGSGKTLAFCFPIIAGILRDPPRQRPRGRW 225

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               A+I++P   L+ Q ++  KK+   T + V +  G    + + + LER       I+
Sbjct: 226 ACPLALILSPTRELSAQIHDEAKKFAYRTGLKVVVAYGGAQISLQMRELER----GVDIL 281

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK------LTQKATAPHVLL 425
           + T     D ++  +        L L   D     G + +++                +L
Sbjct: 282 VATPGRLHDLMERGRVALSMIKYLALDEADRMLDMGFEPQIRKIVETSDMPPPGQRQTML 341

Query: 426 MTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV-----IERLKV 477
            +AT  PRT   L    L +     +    +    I   +  +   ++      I   + 
Sbjct: 342 FSAT-FPRTIQSLAADFLHNYIFLAVGRVGSSTDLIVQRVERVQEAEKRSLLMDIIHGQK 400

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            +    +   +   +E       +   +               IHG  +  ++E  +  F
Sbjct: 401 AIGANGQPPLMLVFVET------KRGADALEDWLIRSGFPATTIHGDRTQPEREQALRCF 454

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + G   +L+AT V   G+D+   + +I  +        +H++ GR GR          + 
Sbjct: 455 RTGMTPILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRI-GRTGRAGNSGLATAFFT 513

Query: 598 PPLSKNSYTRLSVLKNTE 615
              S  +     +++ + 
Sbjct: 514 DKDSGLAKPLAELMQESS 531


>gi|302789710|ref|XP_002976623.1| hypothetical protein SELMODRAFT_151274 [Selaginella moellendorffii]
 gi|300155661|gb|EFJ22292.1| hypothetical protein SELMODRAFT_151274 [Selaginella moellendorffii]
          Length = 595

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 63/378 (16%), Positives = 124/378 (32%), Gaps = 52/378 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  AI   L           +     GSGKTL     + A +             
Sbjct: 170 KPTPVQRHAIPIALAGRD------LMACAQTGSGKTLAFCFPIIAGILRDPPRQRPRGRW 223

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               A+I++P   L+ Q ++  KK+   T + V +  G    + + + LER       I+
Sbjct: 224 ACPLALILSPTRELSAQIHDEAKKFAYRTGLKVVVAYGGAQISLQMRELER----GVDIL 279

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK------LTQKATAPHVLL 425
           + T     D ++  +        L L   D     G + +++                +L
Sbjct: 280 VATPGRLHDLMERGRVALSMIKYLALDEADRMLDMGFEPQIRKIVETSDMPPPGQRQTML 339

Query: 426 MTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV-----IERLKV 477
            +AT  PRT   L    L +     +    +    I   +  +   ++      I   + 
Sbjct: 340 FSAT-FPRTIQSLAADFLHNYIFLAVGRVGSSTDLIVQRVERVQEAEKRSLLMDIIHGQK 398

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            +    +   +   +E       +   +               IHG  +  ++E  +  F
Sbjct: 399 AIGANGQPPLMLVFVET------KRGADALEDWLIRSGFPATTIHGDRTQPEREQALRCF 452

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + G   +L+AT V   G+D+   + +I  +        +H++ GR GR          + 
Sbjct: 453 RTGMTPILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRI-GRTGRAGNSGLATAFFT 511

Query: 598 PPLSKNSYTRLSVLKNTE 615
              S  +     +++ + 
Sbjct: 512 DKDSGLAKPLAELMQESS 529


>gi|296329829|ref|ZP_06872313.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305676555|ref|YP_003868227.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152868|gb|EFG93733.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305414799|gb|ADM39918.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 479

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 143/371 (38%), Gaps = 40/371 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           L  + +  PTK Q+S I   L+      R   +++   GSGKT    I +       E  
Sbjct: 17  LEGLGYTEPTKVQQSVIPAALE------RKDLVVKSQTGSGKTASFGIPLCELADWDENK 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E I    +  +I    + G      ++  L++    ++H+++G
Sbjct: 71  PQALILTPTRELAVQVKEDITNIGRFKRIKATSVFGKSSFDKQKAELKQ----KSHMVVG 126

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+   L        ++   DE    G  +++   +    T    +L +AT  
Sbjct: 127 TPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTMLFSATLP 186

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L    + +    +I       K I+  +I +   ++      V+++E   +  I 
Sbjct: 187 EDIEKLSRQYMQNPQHIEIKAAGLTTKNIEHAVIQVREENKFSLLKDVLMTENPDSSIIF 246

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E         V +     +        IHG M   D+  VM+ FK G  + L+AT 
Sbjct: 247 CRTKE--------HVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD 298

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + S++I  +      + +H+  GR GR       I       +      L+
Sbjct: 299 VAARGIDIENISLVINYDLPLEKESYVHR-TGRTGRAGNKGKAISFV----TAFEKRFLA 353

Query: 610 VLKNTEDGFLI 620
            ++    GF I
Sbjct: 354 DIEEYI-GFEI 363


>gi|294661382|ref|YP_003573258.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336533|gb|ACP21130.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 575

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 129/372 (34%), Gaps = 37/372 (9%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
             +  + L  + F+ PT  Q  AI   LQ      +   +     G+GKTL   I +   
Sbjct: 10  SPVLTQALDKLSFTQPTAIQAKAIPLALQ------QKDILGSAQTGTGKTLAFAIPLINK 63

Query: 318 VEAGGQ--AVIMAPIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           + +      +I+ P   LAQQ    I +   +++ I   ++ G  P   +   L      
Sbjct: 64  LLSDPTSMGLILTPTRELAQQVATNINQLLFKSSFIKTALLIGGEPYNKQLAQLRS---- 119

Query: 375 QAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVL 424
              IIIGT     D ++           LIL   D     G   +L+    Q  T    L
Sbjct: 120 NLRIIIGTPGRVIDHLERGSFNPKDIDFLILDETDRMFDMGFSIQLEQIVSQLPTQRQTL 179

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL--SEG 482
           + +AT  P+   L +       +I         I    +    ++   E     L     
Sbjct: 180 MFSATFPPKVEKLAAKYMQSPERIFMNEFDSMAIVAQNLTQEILEIKEENKYFELLTQLN 239

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            +   I   ++       +   E  +        +   IHG +    +E VM +F+ G  
Sbjct: 240 SREGTILVFVKT------KDNAEHLSLRLNKEAYNTCAIHGNLRQTKRERVMRAFRQGRH 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++++AT +   G+DV     +I  +  H     +H++ GR  R       +       S 
Sbjct: 294 QIMVATDIAARGLDVPHVKHVINYDIPHAPEDYVHRI-GRTARAGAKGFALSFV----SS 348

Query: 603 NSYTRLSVLKNT 614
               R + +++ 
Sbjct: 349 QDRKRWNAIQDL 360


>gi|229528359|ref|ZP_04417750.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229334721|gb|EEO00207.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
          Length = 422

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 71/356 (19%), Positives = 131/356 (36%), Gaps = 33/356 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQ-------- 323
           PT  Q+ A+  +LQ          +     G+GKT    + +    +E   Q        
Sbjct: 29  PTPIQQQAVPHVLQGKDV------LAGAQTGTGKTAAFGLPLIQRFIEQPWQRETNSKEI 82

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I T
Sbjct: 83  RALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLR----GGVDILIAT 138

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D      L L  V E        R+           +L   +P+ +TL  ++  D
Sbjct: 139 PGRLLDHAHVKSLFLGKV-EVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFD 197

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
             I  +  +   R PI+  + P N   E ++++   + + +K   +   I  K       
Sbjct: 198 SKIKAVAYR-IMRDPIEVQVTPSNSTAETVQQIVYPVDKKRKRELLSYLIGSKNWQQVLV 256

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               R   +      +        I+G  S   ++  +D FK G  + LIAT V   G+D
Sbjct: 257 FTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLD 316

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     ++  +        +H++ GR GR       + L    LS +   +L  ++
Sbjct: 317 IAQLEQVVNYDMPFKAEDYVHRI-GRTGRAGLAGLAVSL----LSHDEQPQLEAIE 367


>gi|255089334|ref|XP_002506589.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
 gi|226521861|gb|ACO67847.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
          Length = 576

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 68/382 (17%), Positives = 136/382 (35%), Gaps = 40/382 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------G 321
           SPT  Q  +    LQ          I     GSGKT+  L      +            G
Sbjct: 147 SPTPIQAQSWPIALQGYD------LISVAKTGSGKTVGYLFPGIMHIRGRQGPSFPRPVG 200

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
               ++AP   LA Q  +   K+ +   +    + G  P+ H+ + L         I I 
Sbjct: 201 PTVTVLAPTRELATQIQDETAKFGRAIGMYSVCLYGGAPKGHQLRELRH----GPQIAIA 256

Query: 382 THALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D ++   + L     V++DE  R          +K      +L  A    +TL 
Sbjct: 257 TPGRLNDFLESGAVNLGSSTYVVLDEADRMLDMGFEPQIRK------ILQRAPAQRQTLF 310

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAYWICPQIEEK 495
            T+     + ++        PI+  I   + +    +  +V  +  G +      ++   
Sbjct: 311 FTATWPRAVVRVAT-AILTNPIQVNIGDTDTLVANKDITQVVEVCGGFQKQQRLMEVLRN 369

Query: 496 ------KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                 K   F    +  + +        A+IHG     +++ +++ F++G   +L+AT 
Sbjct: 370 PPTQPLKAIVFCGTKKMCDQIGRSMGGMGAVIHGDKEQRERDWILNQFRSGRVPVLVATD 429

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ + ++++  +  +     +H++ GR GR            P     +   + 
Sbjct: 430 VAARGLDIKEVNMVVNFDFPNQIEDYVHRI-GRTGRAGNKGWAHSFIEPGEGNMARKLIP 488

Query: 610 VLKNTEDGFLIAEEDLKQRKEG 631
           +L++         +D+ +R  G
Sbjct: 489 ILRDAGQDVPAELDDMARRGGG 510


>gi|206971476|ref|ZP_03232426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206733461|gb|EDZ50633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
          Length = 458

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PDSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     +I  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFIMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|308808280|ref|XP_003081450.1| putative RNA helicase [Oryza sativa (ISS) [Ostreococcus tauri]
 gi|116059913|emb|CAL55972.1| putative RNA helicase [Oryza sativa (ISS) [Ostreococcus tauri]
          Length = 734

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 134/361 (37%), Gaps = 31/361 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
            P+  Q  +   ++        M+ I     GSGKTL   +     + +           
Sbjct: 343 KPSPIQAQSWPIVM----SGRDMVGI--AATGSGKTLAFGMPALTQIRSQPPCKPGQPIC 396

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LAQQ  +      + + +    + G  P+  ++ A++    G A +I+ T  
Sbjct: 397 LVLAPTRELAQQTAKVFDDAGEASGVRCVCVYGGAPKYEQKNAMKAG--GGAAVIVATPG 454

Query: 385 LFQDS-----IQYYKLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTATPIP-- 432
             +D      I+  ++ ++++DE  R        + R            ++ +AT     
Sbjct: 455 RLRDFMEEGVIKLDRVTMLVLDEADRMLDLGFEPEIRAIAGATRADRQTVMFSATWPMSV 514

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           ++L    + +    +I  +        T I+ +    +    L  V+ +   +   CP+ 
Sbjct: 515 QSLASEFMCNPVRVRIGSEGLKASQSITQIVEVVEPQDKDRHLARVMKQYLGSPKDCPRT 574

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +        L   + +    IHG MS  D+E  +++FK GT ++LIAT V  
Sbjct: 575 L-IFGLYKKECANLHQRLSREWPAVC--IHGDMSQADRERSVEAFKKGTSRILIATDVAA 631

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+     +I           +H++ GR GR          +       +   ++VL+
Sbjct: 632 RGLDIKGVEYVINYTFPLTTEDYVHRI-GRTGRAGATGLAHTFFTQHDKARAGELVNVLR 690

Query: 613 N 613
            
Sbjct: 691 K 691


>gi|55821544|ref|YP_139986.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55737529|gb|AAV61171.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
          Length = 528

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 126/343 (36%), Gaps = 34/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     +   E   QA+++A
Sbjct: 23  QPSPIQELTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLDKIHTEENTIQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ ++  + V  + G      + KAL       AHI++GT     D
Sbjct: 77  PTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLV 436
            I+   L L  +        DE    G        +++       LL +AT     + + 
Sbjct: 133 LIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRIG 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +  + D +  KI  K      +    I +   ++     +++  +  +   +  +     
Sbjct: 193 VQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPELSIVFGRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +        IHG +    +  ++  FKNG   +L+AT V   G+D
Sbjct: 249 ----KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILVATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +   + +   +      + +H++ GR GR  +    I    P 
Sbjct: 305 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGQSGQSITFVSPN 346


>gi|114564376|ref|YP_751890.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335669|gb|ABI73051.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 477

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 124/343 (36%), Gaps = 36/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQAQAIPAVLAGQDV------MAAAQTGTGKTAGFTLPILELLSKGERAQRGQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +  Y  N  +   ++ G +    +  AL         I++ T  
Sbjct: 77  LVLTPTRELAAQVQESVATYGVNLPLKSAVVFGGVSIVPQLAALRN----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     +I + KL ++++DE  R      ++  +K       ++   P  R  ++ S
Sbjct: 133 RLLDLCQQKAISFSKLEILVLDEADRMLDMGFIRDIKK-------VLALLPAKRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +  +   K     P++  + P N     + +    + + +K+  +   I+      
Sbjct: 186 ATFSNEIRELAKGLVNNPVEISVTPRNATANTVTQCVYPVDKTRKSMALIELIKTNDWKQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   +  FK G  ++++AT +   
Sbjct: 246 VLVFSRTKHGANRLAKSLEAAGIKAAAIHGNKSQTARTKALADFKAGAVQVMVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           GID+     ++  +  +     +H++ GR GR       + L 
Sbjct: 306 GIDIDQLPFVVNFDLPNVPEDYVHRI-GRTGRAGSTGQAVSLV 347


>gi|195579332|ref|XP_002079516.1| GD23992 [Drosophila simulans]
 gi|194191525|gb|EDX05101.1| GD23992 [Drosophila simulans]
          Length = 547

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 123/349 (35%), Gaps = 42/349 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------A 324
           PT  Q+ AI  I            +     GSGKT   L+ + + +    Q        A
Sbjct: 154 PTPIQKRAIPVITAGRD------LMACAQTGSGKTASFLLPIISKLLDDPQDLEFGRPQA 207

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI++P   LA Q ++  +K+   T + + I+ G     H+   + +     +H++I T  
Sbjct: 208 VIVSPTRELAIQIFDEARKFAYETYLKIGIVYGGTSFRHQNDCITK----GSHVLIATLG 263

Query: 385 LFQDSIQY--------YKLILVIVDEQHRFGV----QQRLKLTQKATAPHVLLMTATPIP 432
              D +            ++L   D     G     ++ +           L+ +AT   
Sbjct: 264 RLLDFVDRTFVTFEDTRFVVLDEADRMLDMGFSEGMRKLMTHVTMRPQHQTLMFSATFPE 323

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + L    L +     I         +K  I  +++ ++  + ++++  E         
Sbjct: 324 DIQRLAGEFLNNYVFVAIGMVGGACSDVKQTIYEVSKFNKRAKLMEILREEADGTIVFV- 382

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +   +   S           IHG      +E  +  FKNG+ K+LIAT+V
Sbjct: 383 --------ETKRGADFLASYLSETEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV 434

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              G+D+ +   +I  +        +H++ GR GR          + P 
Sbjct: 435 ASRGLDIKNIKHVINYDMPKNIDDYVHRI-GRTGRVGNNGRATTFFDPD 482


>gi|114794876|pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
           A Resolution
 gi|114794877|pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
           A Resolution
 gi|116668327|pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
           A Resolution
          Length = 410

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 59  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 112

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 113 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 168

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 169 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 228

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 229 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 281

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 282 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 341

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 342 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 400

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 401 EMPMNVADL 409


>gi|218900583|ref|YP_002448994.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|218541686|gb|ACK94080.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
          Length = 481

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 137/371 (36%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYDHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+   L L  +        DE    G   ++   + +  T    +L +AT  
Sbjct: 129 TPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +I         I+  +      ++      V + E   +  I 
Sbjct: 189 EDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEAIEDEKFSLLKDVTMIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  +R          +        IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVYRQ--------LKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENRFLEEIED 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|302665308|ref|XP_003024266.1| hypothetical protein TRV_01617 [Trichophyton verrucosum HKI 0517]
 gi|291188313|gb|EFE43655.1| hypothetical protein TRV_01617 [Trichophyton verrucosum HKI 0517]
          Length = 1171

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 138/379 (36%), Gaps = 47/379 (12%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----- 318
           ++R + +  PT  Q  A+  I+           I     GSGKT+  L+ M   +     
Sbjct: 552 VIRKLGYEGPTSIQSQAVPAIMSGRDV------IGVAKTGSGKTIAFLLPMFRHIRDQRP 605

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  ++IM P   LA Q +   + + +   +      G  P   +   L+R     
Sbjct: 606 LENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKR----G 661

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K          
Sbjct: 662 AEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIR---- 717

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K    KPI+ ++   + +   I ++  V ++  K   
Sbjct: 718 --PNRQTVLFSATFPRNMEALARKTL-SKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVR 774

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  + L             IHG    ID++S +D
Sbjct: 775 LLELLGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTID 834

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +L+AT+V   G+DV    +++  +A +     +H+  GR GR     + +  
Sbjct: 835 DFKAGIFPILVATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 893

Query: 596 YHPPLSKNSYTRLSVLKNT 614
                 + S      LK +
Sbjct: 894 LTEDQERYSVDISKALKQS 912


>gi|217077055|ref|YP_002334771.1| ATP-dependent RNA helicase [Thermosipho africanus TCF52B]
 gi|217036908|gb|ACJ75430.1| ATP-dependent RNA helicase [Thermosipho africanus TCF52B]
          Length = 516

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 72/340 (21%), Positives = 129/340 (37%), Gaps = 33/340 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAPI 330
           PT  QE  I  +L     K     I+Q   G+GKT    I +   +E  G  QA+I+ P 
Sbjct: 24  PTPVQEKVIPTLL-----KKEKNLIVQAKTGTGKTAAFGIPLIELLENKGYVQAIILTPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E I    +  ++ +  I G      +   L +       I++GT     D +
Sbjct: 79  RELALQVSEEI-NSLKRKKLKILPIYGGQSIQRQIDHLRK----GVDIVVGTPGRILDHL 133

Query: 391 QYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--LVLT 438
           +   +        IL   DE    G    +   L   +     L+ +AT   R   L   
Sbjct: 134 ERGTIDLSKVDYFILDEADEMLDMGFIDDVEKILKSTSDDKFFLMFSATIPKRIIDLAKK 193

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + ++ KI +K       + + I +   D+     +++  E +    +  + + + ++
Sbjct: 194 YIKNYEVIKIQDKQLTTNLTEQIYIELRESDKFEALCRIIDMEEEFYGMVFCRTKVEVDT 253

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
               ++ER              +HG  S   +E V+  F+     +L+AT V   GID+ 
Sbjct: 254 VSSKLIER--------GYDAEALHGDFSQYQRERVLKKFREKKVNILVATDVAARGIDIT 305

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + +I  +        +H++ GR GR  +    I    P
Sbjct: 306 GLTHVINYSIPLNPEHYVHRI-GRTGRAGKEGIAITFVTP 344


>gi|152993022|ref|YP_001358743.1| DEAD-box ATP dependent DNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424883|dbj|BAF72386.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp.
           NBC37-1]
          Length = 460

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 152/422 (36%), Gaps = 54/422 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            P+  Q+ AI  I            + Q   G+GKT    + M   +  G   +A+++ P
Sbjct: 23  EPSPIQKMAIPIIEGGKD------LVGQAHTGTGKTAAFGLPMMDKLAKGEIERALVITP 76

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +    +   I    + G +    +   + +       I++ T    +D 
Sbjct: 77  TRELATQVADELYHLGRFAGIRTLTVYGGVGYGRQIALIHK----GVQIVVATPGRLKDL 132

Query: 390 IQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            +  K        ++L   DE    G    +K   +    +          +TL+ ++  
Sbjct: 133 YRKGKIDVLNPEIVVLDEADEMLDMGFLDEIKEIFEYIPQN---------RQTLLFSATM 183

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---- 497
              I ++      +    +V+      + +IE+   V++E ++   I   +E +      
Sbjct: 184 PEPIKELANHILYQPEFISVVGDEETTNNIIEQRYYVINENQRDEAIVKLLETEDTNKCI 243

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +  V+R     +    + + +HG +   D+E V+ +++ G  K+++AT V   G+
Sbjct: 244 IFCRMKREVDRLTEYLQAQGFNASGLHGDLEQQDREVVIKAYRRGETKIMVATDVAARGL 303

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV D + +   +      + +H++ GR GR  +    I L     ++       + K   
Sbjct: 304 DVKDVTHVFNYHIPFDPQSYVHRI-GRTGRAGKSGQAITLVT---TEEFRELQRIQKEVG 359

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI-ARKDAKHILTQDPDLT 674
               +A                Q G      +   L + + ++   K+AK ++    D+ 
Sbjct: 360 ADMHLA--------------TLQGGEGLDESSLEYLAEQIRDMPVHKEAKRLIEYLGDID 405

Query: 675 SV 676
             
Sbjct: 406 KE 407


>gi|21673860|ref|NP_661925.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
 gi|21646994|gb|AAM72267.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
          Length = 414

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 130/360 (36%), Gaps = 37/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           SPT  Q+ AI  IL+          +     G+GKT    + +   +            +
Sbjct: 23  SPTPIQKEAIPVILEG------NDLLACAQTGTGKTAAFALPVLQRLHQSRMHGEKRKIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA Q  E    Y ++T +I  +I G + Q  +   L R       I++ T 
Sbjct: 77  CLVLTPTRELAIQIGESFTAYGRHTGLINTVIFGGVNQNPQTARLVR----GVDILVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D      +    +   ++DE  R      +           +L       ++L  +
Sbjct: 133 GRLLDLIGQGHLHLRDIEYFVLDEADRMLDMGFIHDI------RRVLAVLPKKRQSLFFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-- 496
           +    +I K++       P + ++ P++   E+I +  + +    K   +   ++E+   
Sbjct: 187 ATMPPEIIKLSA-AILHNPKEVMVTPVSSTVEIINQQILFVDRENKNSLLAHLLKERNIE 245

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  +   ++      H   +   IHG  S   ++  + +FK    ++L+AT +  
Sbjct: 246 SALVFTRTKHGADKVARFLAHHDITAEAIHGNKSQNARQRALGNFKTRQTRVLVATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+ +   +I  +  +     +H++ GR GR     +     +            ++ 
Sbjct: 306 RGIDIDELEYVINIDLPNIPETYVHRI-GRTGRAGNRGAAYSFCNAEEKAYLRDIEKLIA 364


>gi|260063256|ref|YP_003196336.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata
           HTCC2501]
 gi|88783350|gb|EAR14522.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata
           HTCC2501]
          Length = 422

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 134/359 (37%), Gaps = 38/359 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------- 323
           PT  Q  AI  +L      NR   +     G+GKT    I +   +E   +         
Sbjct: 24  PTDIQAQAIPHVL------NRRDVMGSAQTGTGKTAAFAIPILQHLERDRRYGGKRGVVN 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  E +  Y   T I   +I G + Q  + +AL R       I++ T 
Sbjct: 78  ALIVTPTRELAIQIGESLTAYGHYTGIRNTVIFGGVKQGKQVEALRR----GVDILVATP 133

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D +        K+   ++DE  R      +   +K      ++       ++L  +
Sbjct: 134 GRLLDLMDQGIISLSKVEYFVLDEADRMLDMGFIHDIRK------IIARLPAERQSLFFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    DI  ++ K     P+K  + P++   E I +     ++  K   +   +++    
Sbjct: 188 ATMPDDIVSLSRK-ILSDPVKVAVSPVSSTAETIRQYLYYTNKSDKNDLLLHILKDPDMD 246

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +   +R          S A IHG  S   ++  +  FK+G  ++L+AT +  
Sbjct: 247 QVLLFARTKHGADRIVKNLGKKKISAAAIHGNKSQNQRQKALGQFKDGKVRVLVATDIAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            GID+     ++  +  +     +H++ GR GR  E    I L  P  +        ++
Sbjct: 307 RGIDIDQLRYVVNFDIPNVAETYVHRI-GRSGRAGEEGVSISLCEPEENAYIRDIEKLI 364


>gi|302392742|ref|YP_003828562.1| DEAD/DEAH box helicase domain protein [Acetohalobium arabaticum DSM
           5501]
 gi|302204819|gb|ADL13497.1| DEAD/DEAH box helicase domain protein [Acetohalobium arabaticum DSM
           5501]
          Length = 527

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 132/363 (36%), Gaps = 36/363 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
            ++ F   T  Q  AI  +L           I Q   G+GKT    I +   ++      
Sbjct: 20  EDMGFEEATPIQTEAIPHLLAGKDV------IGQAQTGTGKTAAFGIPILEKIDPDDKSV 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+++ P   LA Q  E I +  +  + I  + + G      + KAL++       I+IG
Sbjct: 74  QALVLCPTRELAIQVSEEIGRLAKYKRKIKTLPVYGGQSIKRQIKALKK----GVQIVIG 129

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL-KLTQKATAPHVLLMTATPIP 432
           T     D ++   L        IL   DE    G +  +  + +        +  +  +P
Sbjct: 130 TPGRTMDHMRRGTLKFDNLKMVILDEADEMLNMGFRDDIETILEGVKGKRQTIFFSATMP 189

Query: 433 RTLVL---TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           ++++        D +I K+  K      I+     +NR +++    +++     K   + 
Sbjct: 190 QSILKLRKKYQTDPEIVKVVHKKLTVPNIEQGYFEVNRRNKLEVLSRLIDIYNPKLSIVF 249

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N R  V+      +     +  IHG ++   ++ VM+ FKNGT + L+AT 
Sbjct: 250 --------CNTRKQVDELTIQLQARGYFVDGIHGGLNQPQRDRVMNKFKNGTIETLVATD 301

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GIDV D   +   +        +H++ GR GR                        
Sbjct: 302 VAARGIDVDDVEAVFNYDIPQDIEYYVHRI-GRTGRVGRQGYAFTFVVGKEIYQLKKIEK 360

Query: 610 VLK 612
             K
Sbjct: 361 YAK 363


>gi|304382917|ref|ZP_07365399.1| ATP-dependent RNA helicase DeaD [Prevotella marshii DSM 16973]
 gi|304335942|gb|EFM02190.1| ATP-dependent RNA helicase DeaD [Prevotella marshii DSM 16973]
          Length = 420

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 131/363 (36%), Gaps = 44/363 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL      + ++ + Q   G+GKT   L+ + + +  GG        VIM
Sbjct: 25  TPIQEKCIPEILNG----HDIMGVAQ--TGTGKTAAYLLPILSRLADGGFPDETINCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ +    Q +  +        +R     +     A ++I T     
Sbjct: 79  SPTRELAQQIDQAMQGFGYYLQDVSSVAVYGGNDGNRYDQEVKSLRLGADVVIATPGRLI 138

Query: 388 DS-----IQYYKLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                  + + ++   ++DE  R               Q      +++ +AT        
Sbjct: 139 SHLSLGKVDFSRVSFFVLDEADRMLDMGFSDDILTIFKQLPKTCQIIMFSAT-------- 190

Query: 438 TSLGDIDISKITEKPAGRKPIKTVI-IPINRIDEVIERLKVVLSEGKKAYWIC------P 490
                   SKI E  A        + I +++  E I++   V  E +K   I        
Sbjct: 191 ------MPSKIEELAATMLKNPVEVKIAVSKPAEKIKQTAYVCYEPQKLGIIKHIFKAGN 244

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  S  ++ V+  N   +        +H  ++  +++ +M  FK+G   +L+AT +
Sbjct: 245 LTRTIIFSGKKNKVKDINRALQRLHIKSGEMHSDLTQAERDEIMYRFKSGAIDVLVATDI 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +  GID+ D   +I  +        +H++ GR  R E   + I            +    
Sbjct: 305 VARGIDIDDIYTVINYDVPRDAEDYVHRI-GRTARAERDGNAITFVSDADISYFQSIEKF 363

Query: 611 LKN 613
           L+ 
Sbjct: 364 LEK 366


>gi|296387524|ref|ZP_06876999.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 449

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 127/344 (36%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQ------- 323
           +PT  Q  AI   L+          +     G+GKT    + +   +   G Q       
Sbjct: 23  TPTPIQAQAIPPALKGRD------LLAAAQTGTGKTAGFALPLLQRLTLEGPQVAANSVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA+Q +  I+ Y Q+  +   +  G +    +   L +       I++ T 
Sbjct: 77  ALVLVPTRELAEQVHASIRDYGQHLPLRTAVAYGGVSINPQMMKLRK----GGDILVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++++ +L  +++DE  R        L          L  A P  R  +L 
Sbjct: 133 GRLLDLYRQNAVKFAQLQALVLDEADRM-------LDLGFARELDELFAALPRKRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +   +   R P+   + P N   + + +  V + + +KA   C  ++  +  
Sbjct: 186 SATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQTNRWR 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R  VE    L +    +   IHG      +   +  FK G   LL+AT V  
Sbjct: 246 QALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            G+D+ +  +++  +        +H++ GR GR       + L 
Sbjct: 306 RGLDIEEMPLVVNFDLPIVAEDYVHRI-GRTGRAGASGQAVSLV 348


>gi|228942602|ref|ZP_04105134.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228982168|ref|ZP_04142457.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis Bt407]
 gi|228777520|gb|EEM25798.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis Bt407]
 gi|228817028|gb|EEM63121.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943251|gb|AEA19147.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 481

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 136/371 (36%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYDHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L L  +        DE    G   Q   +  +     + ++ +  +P
Sbjct: 129 TPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPIKRMTMLFSATLP 188

Query: 433 RT---LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +I         I+  +  +   +++     V   E   +  I 
Sbjct: 189 EDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  +R                   IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVYRQ--------LNRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|229181700|ref|ZP_04309023.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 172560W]
 gi|228601733|gb|EEK59231.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 172560W]
          Length = 481

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 137/371 (36%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYDHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L L  +        DE    G   Q   +  +     + ++ +  +P
Sbjct: 129 TPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTMLFSATLP 188

Query: 433 RT---LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +I         I+  +  +   +++     V   E   +  I 
Sbjct: 189 EDVEKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  +R          +        IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVYRQ--------LKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|170016724|ref|YP_001727643.1| putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
 gi|169803581|gb|ACA82199.1| Putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
          Length = 522

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 66/341 (19%), Positives = 126/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE  I   L           I Q   G+GKT    + +   ++      QA+I++P 
Sbjct: 25  TPIQEKTIPLTLAGKDV------IGQAQTGTGKTAAFGLPILEHIDLSNKNIQALIVSPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E +KK  ++  + V+++ G      + + L+        I++GT     D I
Sbjct: 79  RELAIQTAEELKKLGRDKHVDVQVVFGGADIRRQIQNLKS----HPQILVGTPGRLLDHI 134

Query: 391 QYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTLVLT 438
                       L+L   DE    G    +   +         LL +AT  P  + + + 
Sbjct: 135 NRKTVKIDNVKTLVLDEADEMLNMGFLDDIESIIKNTPADRQTLLFSATMPPAIKRIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  +I  K      +    + +   ++     ++   +  K   +  +       
Sbjct: 195 FMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIFDVQAPKLAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  VE  +   E      A +HG ++   +  V+  FK+    +L+AT V   G+DV 
Sbjct: 249 --KRRVEELSRGLEARGYRAAGLHGDLTQQMRSRVLAQFKSHEINILVATDVAARGLDVK 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           D + +   +      + +H++ GR GR       + L  P 
Sbjct: 307 DVTHVYNFDIPQDPESYVHRI-GRTGRAGAKGVSVTLVAPN 346


>gi|167584515|ref|ZP_02376903.1| ATP-dependent RNA helicase DbpA [Burkholderia ubonensis Bu]
          Length = 464

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 84/461 (18%), Positives = 170/461 (36%), Gaps = 62/461 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 22  LAQLGYADMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARRFD 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    + V  + G  P   + ++LE      AHI++
Sbjct: 76  VQAMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIVV 131

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 132 GTPGRIMDHLDRGTLALDALNTLVLDEADRMLDMGFFDDIAKVARQ------CPPTRQTL 185

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   +   
Sbjct: 186 LFSATYPDGIAKLSQQFLRNP--KEVKLAERHDDSKIRQRFYEVTEDERLHAVGLLLNHY 243

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 244 RPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 304 VAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQDGWALSLASMDEMGRVGCIEQ 362

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILGIKQSGMPKFLIAQP 649
            LK   +   +A              E L+           G++LG   +G   F  AQ 
Sbjct: 363 ALKREVEWHPLAELKADASEPLLPPMETLQILGGRKDKIRPGDVLGAL-TGDAGFSGAQI 421

Query: 650 -----ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                    + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 422 GKINVTEFSTYVAVERGIARDALRKL-NAGKIKGKRVKVRL 461


>gi|312129451|ref|YP_003996791.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311905997|gb|ADQ16438.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 619

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 134/373 (35%), Gaps = 25/373 (6%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
             + F+  T  Q +AI  ++           I Q   G+GKT    I     V   +   
Sbjct: 84  EEMGFTESTPIQTAAIPVVMSGRDV------IGQAQTGTGKTAAFGIPAIEHVNAEDRNT 137

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +I+ P   LA Q  E +    +    ++V  I G      +   L+R       I++G
Sbjct: 138 QVLILCPTRELALQVKEQLTLLAKYKKGLLVSAIYGGESYERQFANLKR----GTQIVVG 193

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D I+   L L  +         + L +  +     +L   A    +T++ ++  
Sbjct: 194 TPGRIMDHIEKKTLKLDNISMVILDEADEMLNMGFREDIEQILSF-AKEDRQTVLFSATM 252

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
             +I  IT+K     P    +      +  IE+   ++ +  K   +   I+        
Sbjct: 253 SKEILNITKKFQN-DPEIVKVTRKEITNTNIEQSYYLVKKEAKFELMVRLIDVHDLQLML 311

Query: 497 -ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +S V+      +    +   +HG M    +  VM+ F+NG  K+L+AT V   GI
Sbjct: 312 VFCNTKSKVDEIVEELQANGYAAEGLHGDMRQAARNQVMNKFRNGNTKILVATDVAARGI 371

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK-NT 614
           DV     +I  +        +H++ GR GR  ++    L                 K   
Sbjct: 372 DVSGVDAVINYDLPMDLEYYVHRI-GRTGRAGKLGKAFLFITKRDRSRMRDLEQYTKVAI 430

Query: 615 EDGFLIAEEDLKQ 627
             G +    DL++
Sbjct: 431 PQGKIPTSADLEK 443


>gi|160380611|sp|A6ZRX0|DBP2_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD
           box protein 2; AltName: Full=p68-like protein
 gi|151944424|gb|EDN62702.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190409099|gb|EDV12364.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|259149249|emb|CAY82491.1| Dbp2p [Saccharomyces cerevisiae EC1118]
          Length = 546

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 132/368 (35%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L        M+ I     GSGKTL   +     + A        G  
Sbjct: 135 KPTGIQCQGWPMAL----SGRDMVGI--AATGSGKTLSYCLPGIVHINAQPLLAPGDGPI 188

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q      K+  +++I    + G +P++ + + L R +     I+I T 
Sbjct: 189 VLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSE----IVIATP 244

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 245 GRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 304

Query: 434 TLVLTSLGDIDISKI------TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              L +    D  ++               I  V+    + D + + L+    + +    
Sbjct: 305 VKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTL 364

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I         S  R   +    L E    ++AI HG     +++ V+  F+NG   +++A
Sbjct: 365 IF-------ASTKRMCDDITKYLREDGWPALAI-HGDKDQRERDWVLQEFRNGRSPIMVA 416

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV   + +I  +        +H++ GR GR     + I  +           
Sbjct: 417 TDVAARGIDVKGINYVINYDMPGNIEDYVHRI-GRTGRAGATGTAISFFTEQNKGLGAKL 475

Query: 608 LSVLKNTE 615
           +S+++   
Sbjct: 476 ISIMREAN 483


>gi|143456452|sp|Q0DB53|RH52A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52A
 gi|51090883|dbj|BAD35456.1| putative DEAD-box protein 3 [Oryza sativa Japonica Group]
 gi|222635845|gb|EEE65977.1| hypothetical protein OsJ_21891 [Oryza sativa Japonica Group]
          Length = 602

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 139/381 (36%), Gaps = 53/381 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM----------------- 314
           SPT  Q  ++   L           +     GSGKT    + +                 
Sbjct: 106 SPTPVQRYSMPIALAGRD------LMACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRER 159

Query: 315 --AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                  A  +A+++AP   LA Q  E  KK++  T + V +  G  P  ++ + LER  
Sbjct: 160 SSFNRAAAKPRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAYGGTPMYNQLRDLER-- 217

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMT 427
              A I++ T     D ++  K+ L  +     DE  R          Q       + M 
Sbjct: 218 --GADILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEP--QIRKIVERMNMP 273

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              + +T++ ++    +I ++           T +  +    ++I +   +LS+G+K  +
Sbjct: 274 RKSVRQTMLFSATFPPEIQRLASDFLSNYIFIT-VGRVGSSTDLIMQKVELLSDGEKRGY 332

Query: 488 ICPQIEEKK------------ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKES 532
           +   ++ +                F       +SL     S       IHG  +  ++ES
Sbjct: 333 LLDLLQRQSVGVANSKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERES 392

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            + SFK G   +++AT V   G+DV + + +I  +        +H++ GR GR  +  S 
Sbjct: 393 ALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRI-GRTGRAGKAGSA 451

Query: 593 ILLYHPPLSKNSYTRLSVLKN 613
              +       +   L ++  
Sbjct: 452 TAFFTESDHSLAKGLLELMTE 472


>gi|229065102|ref|ZP_04200395.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH603]
 gi|228716131|gb|EEL67850.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH603]
          Length = 481

 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 139/371 (37%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L L  +        DE    G   Q   +  +     + ++ +  +P
Sbjct: 129 TPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTMLFSATLP 188

Query: 433 RTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           + +   S   +D     +I         I+  +  +   +++     +   E   +  I 
Sbjct: 189 KDVEKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMREEEKLSLLKDITTIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  F+          +        IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVFQQ--------LKRINYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNNGKAITFMTPYENRFLEEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|168178014|ref|ZP_02612678.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916]
 gi|182671239|gb|EDT83213.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916]
          Length = 425

 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 134/358 (37%), Gaps = 38/358 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------QA 324
           T  QE +I  IL           +     G+GKT    + +   +             +A
Sbjct: 25  TPIQEKSIPYILDGKD------LVGCAQTGTGKTAAFAVPVLQNLSKDKKANKNPKPIRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  E  + Y +   +   +I G + Q  + K L         I+I T  
Sbjct: 79  LVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKVLRE----GVDILIATPG 134

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I    +   ++DE  R      +   +K      ++     I + L+ ++
Sbjct: 135 RMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKK------IISKLPKIRQNLLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
               +I+K+ +    + PI+  + P++   + I +    + + +K   +   + +K    
Sbjct: 189 TMPSEITKLVDS-IVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRSLLKHLLRDKSIES 247

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +     N + +    +      IHG  S   ++  +++FK G  ++L+AT +   
Sbjct: 248 ALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVATDIAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           GIDV + S +   N        +H++ GR GR       I       +K+      ++
Sbjct: 308 GIDVNELSHVFNYNLPDVPETYVHRI-GRTGRAGAKGVAISFCDIEETKSLKAIEKLI 364


>gi|296112376|ref|YP_003626314.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis RH4]
 gi|295920070|gb|ADG60421.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis RH4]
          Length = 577

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 68/351 (19%), Positives = 129/351 (36%), Gaps = 22/351 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA------AVEAGGQAV 325
           +PT  Q  AI   L           +L    GSGKT   ++ +         +E   QA+
Sbjct: 40  TPTPIQAKAIPHALNGRD------LLLSAQTGSGKTAAFVLPVLDKMSRKPTIEKHVQAL 93

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           I+ P   LA Q  + +++Y    + +  + + G  P   + +AL++       +II T  
Sbjct: 94  ILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKK----GVQVIIATPG 149

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D ++  ++ L  +D         R+     A     +L       +T++ ++  D  
Sbjct: 150 RLIDHMREGRVDLSKLD-MLILDEADRMLDMGFADDIKEILQNTPQTRQTVMSSATWDGA 208

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---R 501
           + KI E         ++ +    IDE +        +      +    + K+   F   +
Sbjct: 209 VGKIAESFTVNPEKVSIKVESAHIDESVYYCDDFNHKNNILLQVLNNPKIKQAVIFAATK 268

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              E+  +           +HG +    +  ++   K+G C LL+AT V   GID+   S
Sbjct: 269 MSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDLLVATDVAARGIDISAIS 328

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +I  +        +H++ GR GR       + L     ++        LK
Sbjct: 329 HVINYDLPRQVEDYVHRI-GRCGRAGRTGVAVNLCSIDDNRQLEHINRYLK 378


>gi|159117719|ref|XP_001709079.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           ATCC 50803]
 gi|157437194|gb|EDO81405.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           ATCC 50803]
          Length = 391

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 82/370 (22%), Positives = 138/370 (37%), Gaps = 46/370 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q  AI  I+           I Q   G+GKT    I M   ++ G    QA+I++P
Sbjct: 43  PSAIQSQAIVPIISGKDT------IAQAQSGTGKTAAFTIGMLQRIDIGLKSPQAIILSP 96

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +       ++ V    G         A +       H+I+ T       
Sbjct: 97  TRELALQTLKVVDGIGSRLKVQVAQCIGGTQVDDDIAAAQ-----SCHLIVATPGRLLSL 151

Query: 390 IQYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLTS 439
           +Q           ++L   DE    G  +++   +        ++L++AT  P  L LT 
Sbjct: 152 LQKKYVTTSNVKMVVLDEADEMLSRGFTEQIVSIMKFMNADIQIVLVSATLPPEILELTR 211

Query: 440 LGDIDISKITEKPA--GRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEEK 495
               D   I  K A      I+  ++ +      EV+E +  VLS  ++    C  I   
Sbjct: 212 QFMRDPVSILVKEAELTLDGIRQYVVELQDAWKTEVVEDIYKVLS-VQQGVIFCNSIGRV 270

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
           K        E    L      +++ IH  +   ++  +M  F++G  ++LIAT +I  GI
Sbjct: 271 K--------ELAEKLKSAGH-TLSCIHSELDQAERNKIMGEFRSGQTRILIATNIIARGI 321

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV + S++I  +        LH++ GR GR       I                 ++   
Sbjct: 322 DVQNVSLVINYDIPREPETYLHRI-GRSGRFGRKGVAINFVTD-------KDKQSMQAIT 373

Query: 616 DGFLIAEEDL 625
           D F +  E+L
Sbjct: 374 DKFNVTTENL 383


>gi|332285792|ref|YP_004417703.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
 gi|330429745|gb|AEC21079.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
          Length = 550

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 120/364 (32%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
            PT  Q +AI   L           ++    GSGKT   ++     +         G Q 
Sbjct: 23  EPTSVQAAAIPKALAGHD------LMVSSQTGSGKTAAFMLPALNRISNMPPNKGSGVQV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  E  K+Y  + + +   ++ G MP   + KAL R    +  +++ T 
Sbjct: 77  LVLTPTRELAMQVAEATKQYGAHLKDLRTAVVVGGMPYGAQLKALSR----RVDVLVATP 132

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +Q  +        L+L   D     G  + ++     T             +TL
Sbjct: 133 GRLIDHLQAKRVNLSTVHTLVLDEADRMLDMGFIEDIETIVGRTPSD---------RQTL 183

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++  D  I+++  K         +     +   + + L      G K   +   + + 
Sbjct: 184 LFSATLDGTIARLAAKMMRDPLQIEISGQKQKHTNITQSLLYADDNGHKMRLLDHLLRDS 243

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +   +           + A +HG M+   +   +   + G  ++L+AT 
Sbjct: 244 NLDQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGMLQKGKLRILVATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GIDV   S  +  +        +H++ GR GR         L              
Sbjct: 304 VAARGIDVQGISHAVNYDLPMQAEDYVHRI-GRTGRAGRSGLAYTLATHSERHKVRRIEH 362

Query: 610 VLKN 613
            +  
Sbjct: 363 FIGQ 366


>gi|330503492|ref|YP_004380361.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328917778|gb|AEB58609.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 560

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 135/345 (39%), Gaps = 39/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q  AI  IL           I Q   G+GKT    + + + ++      Q +I+A
Sbjct: 28  EPSPIQSQAIPVILAGHD------MIGQAQTGTGKTAAFALPLLSKIDPAKREPQVLILA 81

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y+ Q   + V  + G  P   + KA+ +     A II+ T     
Sbjct: 82  PTRELALQVATAFETYSKQMPGVNVVAVYGGAPMGPQLKAIRQ----GAQIIVATPGRLV 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++           L+L   DE  + G    L++  +A              ++++ ++
Sbjct: 138 DHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPE---------SRQSVLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I  I EK   R+P    I    +    IE+  +++   +K   +   +E +    
Sbjct: 189 TLPHSIRAIAEKHL-REPQHIKIAAKTQTVSRIEQAHLMIHADQKTNAVLRLLEVEDFDA 247

Query: 500 FRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             + V          S  E      A ++G ++   +E V++S K+G   +++AT V   
Sbjct: 248 LIAFVRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GIDV   + +   +  +   + +H++ GR GR       +LL  P
Sbjct: 308 GIDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGRDGRALLLVTP 351


>gi|325183171|emb|CCA17628.1| putative RNA helicase [Albugo laibachii Nc14]
          Length = 1157

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 85/441 (19%), Positives = 151/441 (34%), Gaps = 47/441 (10%)

Query: 212  PRKAKDFEWTSPARERLAYDEL-LAGQIALLLMRKQFKKEIGIPINVEGKIAQKILR--N 268
            P   K+F +  P   R    EL    Q   +    +               A  +     
Sbjct: 711  PVFEKNFYYEHPEVARRTEKELERWKQEHDITTHGKNIPRCVYTFEEASFPAYVLEEVMR 770

Query: 269  IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------- 320
            + F  PT  Q       L        M+ I     GSGKTL  L+     + A       
Sbjct: 771  LGFQKPTPIQCQGWPMAL----SGRDMVGI--SATGSGKTLAFLLPAIVHINAQPHLEPG 824

Query: 321  -GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
             G   +I+AP   LA Q  +   K+  +++I    + G +P+ ++   L +       I 
Sbjct: 825  DGPIVLIIAPTRELAVQIQQEANKFGASSKIKNTCVYGGVPKYNQIMELRQ----GVEIC 880

Query: 380  IGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTAT 429
            I T     D +   K        L+L   D     G + +L+    Q       L+ +AT
Sbjct: 881  ICTPGRMIDLLSQGKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMWSAT 940

Query: 430  PIPRTLVLTSLGDIDISKIT----EKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKK 484
                 + L      D  ++T    E  A +K  + V ++  ++    +     V+ +G +
Sbjct: 941  WPKEIVSLAHDFLTDYIQVTVGSLELTANKKIEQIVEVMDDHQKYNALVAHLRVIYDGGR 1000

Query: 485  AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
                C           +   +  +    +       IHG  S  +++ V+  FK G  ++
Sbjct: 1001 IILFC---------ETKRGADELSRNLRNSRYICKAIHGNKSQEERDYVLKDFKQGKTQI 1051

Query: 545  LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
            L+AT V   G+D+ D   +I  +        +H++ GR  R     + I  +     + +
Sbjct: 1052 LVATDVASRGLDIKDIRYVINFDMPKNVEDYIHRI-GRTARAGSKGTAISFFTSDNGRLA 1110

Query: 605  YTRLSVLKNTEDGFLIAEEDL 625
               + VL+        A   L
Sbjct: 1111 SPLIRVLEEANQQVPAALRSL 1131


>gi|326387193|ref|ZP_08208803.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208374|gb|EGD59181.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 481

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 70/382 (18%), Positives = 139/382 (36%), Gaps = 40/382 (10%)

Query: 238 IALLLMRKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLR 296
           +   L+  + +  +    + +  ++ + +       PT  Q  AI  +L        M+R
Sbjct: 9   LTFTLLYLENRHPMKFADLGLSDELLKSVYDAGYDEPTPIQAQAIPSVL--------MMR 60

Query: 297 --ILQGDVGSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNT 348
             I     G+GKT   ++ M   +  G       +++I+ P   LA Q  E  +KY +N 
Sbjct: 61  DLIGIAQTGTGKTASFVLPMIDVLAHGRRRALMPRSLILEPTRELAAQVAENFEKYGKNH 120

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQ 403
            + + ++ G +    + KAL         ++I T     D  +  K+      L+++DE 
Sbjct: 121 DLRMALLIGGVQMGDQVKALSD----GVDVLIATPGRLMDLFERGKILLTGCELLVIDEA 176

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            R      +   +       +        +TL+ ++     I K+ ++         V  
Sbjct: 177 DRMLDMGFIPDIES------ICSKLPTTRQTLLFSATMPPPIKKLADRFLSNPKYIEVAR 230

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEK------KESNFRSVVERFNSLHEHFTSS 517
           P +    +++      S  K+         +         +   +V +   SL  H  ++
Sbjct: 231 PASANINIVQHKVACASRDKRKVLRHLLRTDNVSTAIVFANRKTTVRDLAKSLKRHGFAA 290

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              IHG M    + + +  FK+G   +L A+ V   G+DV   S +   +        +H
Sbjct: 291 -GEIHGDMDQPQRLAELQRFKDGQINILCASDVAARGLDVKGVSHVFNFDTPWHPDDYVH 349

Query: 578 QLRGRVGRGEEISSCILLYHPP 599
           ++ GR GRG        L    
Sbjct: 350 RI-GRTGRGGASGRAFTLVSAE 370


>gi|317152644|ref|YP_004120692.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942895|gb|ADU61946.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 551

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 132/336 (39%), Gaps = 21/336 (6%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA-AVEAGG--QAVIMAP 329
           PT  QE  I  +LQ       +  + Q   G+GKT    + +   AVE     QA+++ P
Sbjct: 25  PTPIQERTIPLLLQG-----AVDIVGQAQTGTGKTAAFGLPIIETAVENAKRVQALVLTP 79

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I       +I V  + G      + KAL+        +++GT     D 
Sbjct: 80  TRELAIQVADEINSLKGKKRIRVLPVYGGQAIHMQLKALKS----GVDVVVGTPGRIMDH 135

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++   L L  +D          +           +L +A    RTL+ ++    ++ +I 
Sbjct: 136 LKRGTLHLDELD-FFVLDEADEMCNMGFVDDVREILKSANTDRRTLLFSATMPHEVMRIA 194

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN------FRSV 503
           ++  G   + TV    N I  + +++   +++  +   +C  ++ + +         R+ 
Sbjct: 195 KEFMGDYELITVKAEKNDIP-LTKQVFHEVADSDRFEALCRVVDAEPDFYGLVFTRTRAD 253

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +R  S           IHG +S   +E ++  FK     +L+AT V   GIDV D + +
Sbjct: 254 ADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTILVATDVAARGIDVPDLTHV 313

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +           +H+  GR GR  +    I L  P 
Sbjct: 314 VNFALPQDPQTFVHR-TGRTGRAGKEGVAISLIAPS 348


>gi|225434327|ref|XP_002266157.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297745752|emb|CBI15808.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 132/373 (35%), Gaps = 37/373 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q  A+   L           +   + GSGKT    I M     A        G  A
Sbjct: 146 PTFIQAQAMPVALSGRD------LLGCAETGSGKTAAFAIPMIQHCLAQPPVRRGDGPLA 199

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++AP   LAQQ  + +K ++++       I+ G    + +R  L        +I++ T 
Sbjct: 200 LVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQRSELRA----GVNIVVATP 255

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
             F   +Q           ++L   D     G   Q R  +         LL +AT    
Sbjct: 256 GRFIHHLQEGNTSLSRISFVVLDEADRMLDMGFEPQIREVMQNLPQKHQTLLFSATMPME 315

Query: 434 --TLVLTSLGDIDISKITE---KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
             TL    L +    K+ +     A    I   +    +ID ++  L    S+ ++    
Sbjct: 316 IETLAQEYLNNPVQVKVGKVSCPTANVSQILEKVSESEKIDGLLALLVEEASQAERCGRP 375

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            P      E   R   E   +L      ++A+  GR S  ++E+ +  F+NG   +L+AT
Sbjct: 376 FPLTIVFVERKTR-CDEVAEALVAQGLRAVALHGGR-SQAEREAALRDFRNGATNILVAT 433

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   + +I  +        +H++ GR GR          Y            
Sbjct: 434 DVASRGLDVTGVAHVINLDLPKAMENYVHRI-GRTGRAGSTGQATSFYTDRDVFLVAHIR 492

Query: 609 SVLKNTEDGFLIA 621
             + +   G  +A
Sbjct: 493 KAIADVGSGNTVA 505


>gi|170725001|ref|YP_001759027.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810348|gb|ACA84932.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 605

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 77/360 (21%), Positives = 132/360 (36%), Gaps = 26/360 (7%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT  Q ++I  ++ +         + Q   G+GKT    + +  +++     
Sbjct: 21  LDELGYEKPTPIQAASIDPLMANKD------ILGQAQTGTGKTGAFALPLLNSIDPTTNA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    Y++    + V  I G      +  +L R       II+
Sbjct: 75  PQILVLAPTRELAVQVAEAFASYSKFMKGMHVLPIYGGQSMQQQLNSLRR----GPQIIV 130

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT     D ++   L L  +        +    L          ++  TP  R L L S 
Sbjct: 131 GTPGRVMDHMRRGTLKLATLKAMVL--DEADEMLKMGFIDDIEWILEHTPQERQLALFSA 188

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
              +  K         P+   I       E IE+  V +S+  K   +   +E +K    
Sbjct: 189 TMPEQIKRVANKYLDNPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRVLEVEKTEGI 248

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                   S VE    L     +S + +HG M+   +E  +D  K G   ++IAT V   
Sbjct: 249 IIFVRTRNSCVELAEKLEARGYAS-SPLHGDMNQQARERAVDQLKRGKLDIIIATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV     ++  +  +   A +H++ GR GR       IL       +   T     K+
Sbjct: 308 GLDVERIGHVVNYDIPYDTEAYVHRI-GRTGRAGRTGMAILFVTHREMRMLRTIERATKS 366


>gi|7661920|ref|NP_055555.1| eukaryotic initiation factor 4A-III [Homo sapiens]
 gi|109118862|ref|XP_001110130.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Macaca
           mulatta]
 gi|297701955|ref|XP_002827960.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Pongo abelii]
 gi|332263899|ref|XP_003280987.1| PREDICTED: eukaryotic initiation factor 4A-III [Nomascus
           leucogenys]
 gi|20532400|sp|P38919|IF4A3_HUMAN RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           initiation factor 4A-like NUK-34; AltName:
           Full=Eukaryotic translation initiation factor 4A isoform
           3; AltName: Full=Nuclear matrix protein 265; Short=NMP
           265; Short=hNMP 265
 gi|295982193|pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
           Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
           Machinery
 gi|295982194|pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
           Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
           Machinery
 gi|13177790|gb|AAH03662.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|13325146|gb|AAH04386.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|15029856|gb|AAH11151.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|48145617|emb|CAG33031.1| DDX48 [Homo sapiens]
 gi|60655857|gb|AAX32492.1| DEAD-box polypeptide 48 [synthetic construct]
 gi|119609990|gb|EAW89584.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo
           sapiens]
 gi|119609991|gb|EAW89585.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo
           sapiens]
 gi|158254648|dbj|BAF83297.1| unnamed protein product [Homo sapiens]
 gi|168274374|dbj|BAG09607.1| eukaryotic initiation factor 4A-III [synthetic construct]
          Length = 411

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 60  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 114 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 170 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 230 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 282

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 283 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 342

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 343 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 401

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 402 EMPMNVADL 410


>gi|313109386|ref|ZP_07795348.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
 gi|310881850|gb|EFQ40444.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
          Length = 449

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 127/344 (36%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQ------- 323
           +PT  Q  AI   L+          +     G+GKT    + +   +   G Q       
Sbjct: 23  TPTPIQAQAIPPALKGRD------LLAAAQTGTGKTAGFALPLLQRLTLEGPQVAANSVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA+Q +  ++ Y Q+  +   +  G +    +   L +       I++ T 
Sbjct: 77  ALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRK----GVDILVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++++ +L  +++DE  R        L          L  A P  R  +L 
Sbjct: 133 GRLLDLYRQNAVKFAQLQALVLDEADRM-------LDLGFARELDELFAALPRKRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +   +   R P+   + P N   + + +  V + + +KA   C  ++  +  
Sbjct: 186 SATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWR 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R  VE    L +    +   IHG      +   +  FK G   LL+AT V  
Sbjct: 246 QALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            G+D+ +  +++  +        +H++ GR GR       + L 
Sbjct: 306 RGLDIEEMPLVVNFDLPIVAEDYVHRI-GRTGRAGASGQAVSLV 348


>gi|301056918|ref|YP_003795129.1| ATP-dependent RNA helicase [Bacillus anthracis CI]
 gi|300379087|gb|ADK07991.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 481

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 141/378 (37%), Gaps = 40/378 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  ++ L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   
Sbjct: 12  SKEVRRALIGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+++ P   LA Q  E I    +  +I    I G  P A ++  L++    
Sbjct: 66  VEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ---- 121

Query: 375 QAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
           + HI++GT     D I+           L++   DE    G   ++   + +  T    +
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 425 LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT       L  T +      +I         I+  +  +   +++     V   E 
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIEN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I  + +E  +  +R          +        IHG M   D+  VMD F+ G  
Sbjct: 242 PDSCIIFCRTQENVDHVYRQ--------LDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKF 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + L+AT V   GID+ + + +I  +      + +H+  GR GR       I    P   +
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYEDR 352

Query: 603 NSYTRLSVLKNTEDGFLI 620
                 + +     GF I
Sbjct: 353 FLEEIEAYI-----GFAI 365


>gi|291614123|ref|YP_003524280.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584235|gb|ADE11893.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 511

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 69/356 (19%), Positives = 138/356 (38%), Gaps = 37/356 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQAV 325
           P+  Q  AI + L           +     G+GKT   ++     +         G + +
Sbjct: 41  PSPIQAQAIPEALAGHD------LMASAQTGTGKTAAFILPALQRLSVESAVRSKGPRVL 94

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LAQQ  +   KY +N ++ V  I G MP   + K L     G   I++ T   
Sbjct: 95  VLTPTRELAQQVSDAANKYGKNMRVKVVSILGGMPYPLQNKLL----SGFVDILVATPGR 150

Query: 386 FQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLTS 439
             D I+     + +L ++++DE  R      +   ++       +  ATP   +TL+ ++
Sbjct: 151 LIDHIERGRIDFSRLEMLVLDEADRMLDMGFIDDVER-------IAAATPATRQTLLFSA 203

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KK 496
             +  I  + ++        +V     + + + +RL  V     K   +   + +    +
Sbjct: 204 TLEGVIGNLAQRLLKSPKRISVTSAQAKHENIEQRLMYVDDMAHKNRLLDHLLRDVDLNQ 263

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +     +SL +       + A +HG M+  ++   + + + G  ++L+AT V   
Sbjct: 264 ALVFTATKRDADSLADELSAAGHAAAALHGDMNQRERNRTLLNLRRGNVRVLVATDVAAR 323

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           GIDV   + +I  +   F    +H++ GR GRG      +       + +      
Sbjct: 324 GIDVAGITHVINFDLPKFAEDYVHRI-GRTGRGGASGIAVSFASNRDAMHLKKIER 378


>gi|229161413|ref|ZP_04289395.1| ATP-dependent RNA helicase [Bacillus cereus R309803]
 gi|228622053|gb|EEK78897.1| ATP-dependent RNA helicase [Bacillus cereus R309803]
          Length = 454

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 130/348 (37%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEQAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +         IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMVQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L++         A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDDLKGRGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNYDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|71650107|ref|XP_813758.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70878673|gb|EAN91907.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 630

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 70/381 (18%), Positives = 140/381 (36%), Gaps = 36/381 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+  I  +L           +     GSGKT   LI + +++ +           
Sbjct: 152 KPTPVQKYGIPVVLCGHD------LMACAQTGSGKTAAYLIPLVSSILSNVTPNHQGQGS 205

Query: 324 -----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A++MAP   L+ Q +E  +K+T  T I   ++ G     H+   L R       +
Sbjct: 206 RSSPAALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADPRHQVHELSR----GCGL 261

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T     D      + +  +  +++DE  R          +         M      +
Sbjct: 262 LVATPGRLWDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIRMIVQGQESDMPPPGQRQ 321

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++    +I ++  +    +     +  +    E I +    + +  K   +   + 
Sbjct: 322 TLLYSATFPTEIQQLA-REFLHRHYFLQVGRVGSTTENITQDVRWVEDNDKREHLLRLLH 380

Query: 494 EKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           E +          +   +       +   + A IHG     ++E  +  FK+ +C++L+A
Sbjct: 381 ENQNQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMFKSASCQVLVA 440

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+ D SI+I  +        +H++ GR GR  ++   I  ++          
Sbjct: 441 TDVASRGLDIPDVSIVIQYDMPSNIDDYVHRI-GRTGRAGKVGRAISFFNEKNRNIVDDL 499

Query: 608 LSVLKNTEDGFLIAEEDLKQR 628
           + +L  T    L    DL +R
Sbjct: 500 VPLLNETHQNVLQQIMDLTKR 520


>gi|330944943|gb|EGH46750.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 420

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 155/381 (40%), Gaps = 29/381 (7%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ ++  T  Q  ++  IL+ M        I Q   GSGKT    I +   +     G
Sbjct: 48  LESLGYAEMTPIQAQSLPVILKGMD------LIAQAKTGSGKTAAFGIGLLNPINPRFFG 101

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA Q  + I++  +    I V  + G +    +  +LE      AHII+
Sbjct: 102 CQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEH----GAHIIV 157

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q  ++   L+L  ++        + L +        ++  T     +TL+ ++ 
Sbjct: 158 GTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQT-PQRRQTLLFSAT 216

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
             + I +++ K       +TV +     D  IE++   +S  ++   +   +   +    
Sbjct: 217 YPVGIKQLSSKFMRDP--QTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSC 274

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  + V E  + L     S++ + HG +   D++ V+  F N +  +L+AT V   
Sbjct: 275 VAFCFTKQQVQEVVDHLTAKGMSAVGL-HGDLEQRDRDQVLAMFANRSTSVLVATDVAAR 333

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+    ++I           +H++ GR GR  E    + L  P  S+ +     + K 
Sbjct: 334 GLDIDALDMVINVELARDSEIHIHRV-GRTGRAGEKGIAVSLVAPSESQRARAIEELQKA 392

Query: 614 TEDGFLIAEEDLKQRKEGEIL 634
             +      + L  ++ G++L
Sbjct: 393 PLNWQQ--YDRLSIKEGGKLL 411


>gi|323308818|gb|EGA62055.1| Rrp3p [Saccharomyces cerevisiae FostersO]
          Length = 501

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 132/348 (37%), Gaps = 33/348 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
            +N+ +S PT  Q  AI   L+          I     GSGKT    I +   +   +  
Sbjct: 96  CKNLNYSKPTPIQSKAIPPALEGHD------IIGLAQTGSGKTAAFAIPILNRLWHDQEP 149

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A I+AP   LAQQ  E          +    I G M    + + L R    + HIII 
Sbjct: 150 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR----KPHIIIA 205

Query: 382 THALFQDSIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           T     D ++        KL  +++DE  R      L +        +L +  T    T 
Sbjct: 206 TPGRLMDHLENTKGFSLRKLKFLVMDEADRL-----LDMEFGPVLDRILKIIPTQERTTY 260

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I K+ ++ +   P+K  +    +  + + +  +V+  G K  ++   + E 
Sbjct: 261 LFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEF 319

Query: 496 KESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      ++  ER + L      S   +HG ++   +   +D FK G   +L+AT 
Sbjct: 320 IGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATD 379

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   G+D+    I++  +      + +H++ GR  R       I L  
Sbjct: 380 VAARGLDIPSVDIVVNYDIPVDSKSYIHRV-GRTARAGRSGKSISLVS 426


>gi|307941598|ref|ZP_07656953.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
 gi|307775206|gb|EFO34412.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
          Length = 436

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 126/342 (36%), Gaps = 27/342 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q++AI  IL+     N +L + Q   G+GKT    + +A  +   G+        
Sbjct: 24  TPTPIQKNAIPLILKG----NDLLGLAQ--TGTGKTAAFGLPLAHRLLEEGRTPEPKAAR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   L  Q    +  + + T + V  + G +    + K L R       I++ T 
Sbjct: 78  ALILAPTRELVNQIASNLTSFIRKTPLRVTSVVGGVSINPQIKRLGR----GTDILVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    + L            Q L L        +  + A    +TL+ ++    
Sbjct: 134 GRLLDLVDRKAVHLNKASYLVLDEADQMLDLGFIHALRRIAGLVAE-KRQTLLFSATMPR 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--- 500
            I  +       KP +  + P  +  E + +    + +  K+ ++   I E+ +      
Sbjct: 193 QIEDLARTYL-HKPERVEVAPAGKTAERVAQSVHFMDQKAKSGFLVDMICERADDTCLVF 251

Query: 501 ---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ER          S   IHG  S   ++  +   + GT K+L+AT V   GID+
Sbjct: 252 CRTKHGAERLMKRLVAAGVSAGSIHGNKSQNQRDRAIKGLREGTLKVLVATDVAARGIDI 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              S +          A +H++ GR  R       I L    
Sbjct: 312 PGVSHVYNFELPEVAEAYVHRI-GRTARAGASGDAISLCSAE 352


>gi|264679797|ref|YP_003279706.1| hypothetical protein CtCNB1_3664 [Comamonas testosteroni CNB-2]
 gi|262210312|gb|ACY34410.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 453

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 128/359 (35%), Gaps = 30/359 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
           S T  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 5   SMTPIQAQAIPVVLTGKDV------MGAAQTGTGKTAAFSLPLLQRLMRHENASASPARH 58

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   LA Q  + I  Y ++T++   ++ G M    +   L++       +++
Sbjct: 59  PVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQTIELKK----GVEVLV 114

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D I+   ++L  V E        R+           +L        TL+ ++ 
Sbjct: 115 ATPGRLLDHIEAKNVVLNQV-EYVVLDEADRMLDIGFLPDLQRILSYLPKSRTTLLFSAT 173

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
              +I ++      + P+   +   N     +E+    +++  K Y I   ++E+     
Sbjct: 174 FSPEIKRLAGSYL-QDPVTIEVARPNETASTVEQRFYKVTDDDKRYAIRSVLKERDIRQA 232

Query: 499 ----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +    R     E      A +HG  S  ++   +++FK G   LL+ T V   G
Sbjct: 233 FIFSNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDVAARG 292

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           +D+ D   +   +        +H++ GR GR       + L     S+N      + K 
Sbjct: 293 LDIKDVPAVFNYDVPFNAEDYVHRI-GRTGRAGASGLAVTLVTDHDSRNVADIEKLTKK 350


>gi|163735815|ref|ZP_02143244.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           litoralis Och 149]
 gi|161390901|gb|EDQ15241.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           litoralis Och 149]
          Length = 433

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 62/362 (17%), Positives = 137/362 (37%), Gaps = 43/362 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQA----- 324
            PT  Q+ AI   +        ++ + Q   G+GKT    + + A +    G  A     
Sbjct: 24  DPTPIQKQAIPHAMNG----RDVMGLAQ--TGTGKTAAFGVPLVAQMLELDGRPAPKSVR 77

Query: 325 -VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q    ++ + +NT++ V ++ G     ++ K LER       +++ T 
Sbjct: 78  GLVLAPTRELATQISVNLRSFAENTKVKVAMVVGGQSINNQIKRLER----GVDLLVATP 133

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +            L+L   D+    G    L+                   +T+
Sbjct: 134 GRLLDLMDRRAVRLDETVFLVLDEADQMLDMGFIHDLRKIASVIPKE---------RQTM 184

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     ++++      R PI+  + P  +  + + +    +++ +K+  +   +++ 
Sbjct: 185 LFSATMPKQMNELANSYL-RSPIRVEVSPPGKAADKVTQEVHFIAKSEKSALLIEMLDKH 243

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +E         +   E+          +   IHG  S   ++  + +FK+G  K+L+AT 
Sbjct: 244 REERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAFKSGEIKVLVATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D   +   +  +     +H++ GR  R  +  + I    P           
Sbjct: 304 VAARGLDIPDVKHVYNYDLPNVPENYVHRI-GRTARAGKDGAAIAFCAPDEMGELKAIQK 362

Query: 610 VL 611
            +
Sbjct: 363 TM 364


>gi|125577677|gb|EAZ18899.1| hypothetical protein OsJ_34439 [Oryza sativa Japonica Group]
          Length = 541

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 132/376 (35%), Gaps = 47/376 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q  AI   L           +     GSGKT      + + +  G  A        
Sbjct: 96  PTPVQRYAIPISLAGRD------LMACAQTGSGKTAAFCFPIISGIMRGPPAQRPQRGGM 149

Query: 325 -------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                  +I++P   L+ Q +E  +K++  T + V +  G  P   + + LER       
Sbjct: 150 RTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLER----GVD 205

Query: 378 IIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I++ T     D ++  ++ L  +     DE  R          Q       + M      
Sbjct: 206 ILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEP--QVRRIVEQMDMPPPGAR 263

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +T++ ++    +I ++         I   +  +    ++I +    + E  K   +   +
Sbjct: 264 QTMLFSATFPKEIQRMASDFLE-NYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHLMDLL 322

Query: 493 EEKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +++                +   +               IHG  +  ++E  + SFK+
Sbjct: 323 HAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALRSFKS 382

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+   + ++  +  +     +H++ GR GR  +       ++  
Sbjct: 383 GHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI-GRTGRAGKSGLATAFFNEN 441

Query: 600 LSKNSYTRLSVLKNTE 615
            S  + +   +++ + 
Sbjct: 442 NSSMARSLAELMQESN 457


>gi|116051990|ref|YP_789167.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587211|gb|ABJ13226.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 449

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 127/344 (36%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQ------- 323
           +PT  Q  AI   L+          +     G+GKT    + +   +   G Q       
Sbjct: 23  TPTPIQAQAIPPALKGRD------LLAAAQTGTGKTAGFALPLLQRLTLEGPQVAANSVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA+Q +  ++ Y Q+  +   +  G +    +   L +       I++ T 
Sbjct: 77  ALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRK----GVDILVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++++ +L  +++DE  R        L          L  A P  R  +L 
Sbjct: 133 GRLLDLYRQNAVKFAQLQALVLDEADRM-------LDLGFARELDELFAALPRKRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +   +   R P+   + P N   + + +  V + + +KA   C  ++  +  
Sbjct: 186 SATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWR 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R  VE    L +    +   IHG      +   +  FK G   LL+AT V  
Sbjct: 246 QALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            G+D+ +  +++  +        +H++ GR GR       + L 
Sbjct: 306 RGLDIEEMPLVVNFDLPIVAEDYVHRI-GRTGRAGASGQAVSLV 348


>gi|168043479|ref|XP_001774212.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674480|gb|EDQ60988.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 584

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 64/378 (16%), Positives = 127/378 (33%), Gaps = 48/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  AI          N    +     GSGKT      + A +          GG+
Sbjct: 158 KPTPVQRHAIPI------SLNGRDLMACAQTGSGKTAAFCFPIIAGIMRNTPPGRPRGGR 211

Query: 324 -----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A+I++P   L  Q  +  KK+   T I V +  G  P  ++ + LER       I
Sbjct: 212 KALPLALILSPTRELTSQISDEAKKFAYQTGIRVVVCYGGAPVHNQLRELER----GVDI 267

Query: 379 IIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T     D ++  ++ L +V     DE  R          Q       + M      +
Sbjct: 268 LVATPGRLSDLLERARVSLSMVRYLTLDEADRMLDMGFEP--QIRRIVEQMDMPPAGERQ 325

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    +I ++         I   +  +    E+I +    + +  K   +   I 
Sbjct: 326 TMLFSATFPREIQRLASDFL-SNYIFLAVGRVGSSTELIVQRVEYVQDADKRSMLMDLIH 384

Query: 494 EKKE-------------SNFRSVVERFNSLHEHFTSSIAIIHGRMS---DIDKESVMDSF 537
            +                  +   +               IHG        ++E  + SF
Sbjct: 385 AQSALAPPGQTSLTLVFVETKKGADALEDWLCRMGFPATTIHGDRKVFPTQEREHALRSF 444

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + G   +L+AT V   G+D+   + ++  +  +     +H++ GR GR  +       ++
Sbjct: 445 RTGVTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI-GRTGRAGKSGVATAFFN 503

Query: 598 PPLSKNSYTRLSVLKNTE 615
                 + +   ++  + 
Sbjct: 504 EKDQSLARSLTELMTESS 521


>gi|227525|prf||1705301A ATP dependent RNA helicase
          Length = 697

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 132/374 (35%), Gaps = 47/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I++      +   +     GSGKT   L+ + + + A G          
Sbjct: 244 PTPVQKHAIPIIIE------KRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLQE 297

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K+   +++   ++ G      + + LER 
Sbjct: 298 NGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLER- 356

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLM 426
                H+++ T     D ++  K+ L       +DE  R          ++        M
Sbjct: 357 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT--M 411

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
               + +T++ ++    +I  +       + I   +  +    E I +  V + E  K  
Sbjct: 412 PPKGVRQTMMFSATFPKEIQILARDFLD-EYIFLAVGRVGSTSENITQKVVWVEEMDKRD 470

Query: 487 WICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           ++   +               +   +           +   IHG  S  D+E  +  F++
Sbjct: 471 FLLDLLNATGKDSLTLVFVETKKGADALEDFLYEEGYACTSIHGDRSQRDREEALHQFRS 530

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+ +   +I  +        + ++ GR GR   +      ++  
Sbjct: 531 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVERI-GRTGRVGNLGLATSFFNEK 589

Query: 600 LSKNSYTRLSVLKN 613
               +   L +L  
Sbjct: 590 NINITKDLLDLLVE 603


>gi|320103060|ref|YP_004178651.1| DEAD/DEAH box helicase domain-containing protein [Isosphaera
           pallida ATCC 43644]
 gi|319750342|gb|ADV62102.1| DEAD/DEAH box helicase domain protein [Isosphaera pallida ATCC
           43644]
          Length = 422

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 140/374 (37%), Gaps = 34/374 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q + I   L+          I Q   G+GKT    + +    E G    QA+I+AP
Sbjct: 36  PSPIQAAFIPPALEGRDV------IGQAKTGTGKTAAFSLPLIEMHEPGQPGPQAIILAP 89

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              L QQ     ++  +   ++V  I G  P   + ++L +       +++GT     D 
Sbjct: 90  TRELVQQICGEFERLARGRDLVVRGIYGGEPIERQLRSLAK----GVDVVVGTPGRVIDH 145

Query: 390 IQYYKLILVIV-----DEQHRF-----GVQQRLKLTQKATAPHVLLMTAT--PIPRTLVL 437
           +Q   + L  V     DE  R             L +       LL++AT  P  R L  
Sbjct: 146 LQRGTMSLEGVYHVVLDEADRMLDIGFRPDIERILRKVPQPHQTLLLSATLSPEVRRLAA 205

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
             + +     ++      + I    IP++   ++   L ++  E  +   +  +      
Sbjct: 206 RYMHEPVELNLSRDEPSVEKIVQKYIPVDHNRKMELLLHLLELEKPRQCIVFCRT----- 260

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++           +A IHG +    +  VM  F++G+  +L+AT V+  GIDV
Sbjct: 261 ---KRGADKLAQRLARRYPGVATIHGDLPQTARNRVMRGFRDGSIPILVATDVVGRGIDV 317

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            + S ++  +        LH++ GR GR  +         P           ++  T + 
Sbjct: 318 EEISHVVNYDIPDDPENYLHRI-GRTGRMGKDGVAYTFVGPDEGIPLTNIEVLINKTLER 376

Query: 618 FLIAEEDLKQRKEG 631
            +I   ++ +R  G
Sbjct: 377 VVIPGFEVTERGVG 390


>gi|167564024|ref|ZP_02356940.1| ATP-dependent DNA helicase RecG [Burkholderia oklahomensis EO147]
          Length = 259

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 18/221 (8%)

Query: 22  KYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSS 81
           K +  L+K+        TR IDL+ + P  + D      + E+    I    G +   + 
Sbjct: 44  KTADKLAKL------GLTRDIDLVLHLPMRYEDETTLTPVRELLPGEIAQTEGVVFD-NE 96

Query: 82  FQLQKRRPYKILLNDGT-GEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVH 140
              + RR   + L D +  E+ L F       +K +   G+++ V G ++     + MVH
Sbjct: 97  IAYRPRRQLLVKLRDDSDAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEMVH 155

Query: 141 PHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQK 196
           P      +       +  VY    G+S    +K I  AL+R P LPE +  ++    L  
Sbjct: 156 PTVKVVEADAPLPQALTPVYPSTAGVSQAYLRKAIDNALTRTP-LPELLPPEVARAHLAP 214

Query: 197 KSFPSIAEAFNIIHNPRKAKD----FEWTSPARERLAYDEL 233
              P +A+A  ++H+P    D     + T PA  R+ +DEL
Sbjct: 215 LDVPPLADAVRLLHHPGVGADETALIDGTHPAWTRIKFDEL 255


>gi|294678037|ref|YP_003578652.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
 gi|294476857|gb|ADE86245.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
          Length = 448

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 133/357 (37%), Gaps = 33/357 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q   I  I++          +     G+GKT    + M   + A G        +
Sbjct: 24  KPTPIQAQGIPHIVRGRD------ILGLAQTGTGKTAAFGLPMLTRILAYGKRPAPKTVR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LA Q ++ +  Y +   + ++ + G      + + L +       ++I T 
Sbjct: 78  ALVLAPTRELATQIHDNLAAYAEGAPVRIQRVVGGASLNVQAEKLSK----GCDVLIATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP---RTLVLTSL 440
               D I+   L+L     + ++ V             H L   A  IP   +TL+ ++ 
Sbjct: 134 GRLIDLIERRALVLS----ETKYLVLDEADQMLDIGFIHALRRIAKLIPAERQTLLFSAT 189

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
               + ++        PI+  +    +  E I++     ++G+KA  +   I        
Sbjct: 190 MPKLMEELAASYL-SDPIRVEVATPGKAAEKIDQGVHFTTQGEKAALLAEYISRHPGELA 248

Query: 497 --ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
              +  +   ++   L E +  S+  IHG  S   +E  + +F+    ++L+AT V   G
Sbjct: 249 VVFNRTKHGSDKLTKLLEKWGFSVTAIHGNKSQGQRERALSAFRASEVQVLVATDVAARG 308

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           +D+   + +   +  +     +H++ GR  R       +    P    +     + +
Sbjct: 309 LDIPQVAHVYNYDLPNVPENYVHRI-GRTARAGRDGRAVAFCGPLEMSDLRAIEAAM 364


>gi|156555544|ref|XP_001603956.1| PREDICTED: similar to vasa-like protein [Nasonia vitripennis]
          Length = 732

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 69/356 (19%), Positives = 129/356 (36%), Gaps = 43/356 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
            PT  Q+  I  +L           +     GSGKT   LI +   + A           
Sbjct: 324 KPTPVQKYGIPILLSGRD------LMACAQTGSGKTAAFLIPIIHTLLAKDRDLSDMSSA 377

Query: 322 ----GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                +A+I++P   L  Q ++  +K+++++ +   II G    +H+ K + +       
Sbjct: 378 NQVEPRALIISPTRELTIQIFDEARKFSKDSVLKCHIIYGGTSTSHQMKQIFQ----GVD 433

Query: 378 IIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I++ T     D      I +  +  V++DE  R      L   +K        M      
Sbjct: 434 ILVATPGRLLDLVGKGKITFDAIEFVVLDEADRMLDMGFLPDVEKVLRHDT--MKPPGER 491

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++    +I ++  K        TV I +      IE+    + +  K   +   +
Sbjct: 492 QTLMFSATFPQEIQQLAAKFLNNYVFVTVGI-VGSACTDIEQSFFEVKKSDKRTKLKELL 550

Query: 493 EEKKESNF----------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            E+ E N           +   +   +L          IHG     ++E  +  FK G  
Sbjct: 551 NEEIEQNMLNGILVFVSEKKTADFIAALLSEDNFPTTSIHGDRLQREREEALYDFKTGKM 610

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +L+AT V   G+D+ +   +I  +        +H++ GR GR          + P
Sbjct: 611 AILVATAVAARGLDIKNVRHVINYDLPKEIDEYIHRI-GRTGRVGNKGKATSFFDP 665


>gi|16117825|dbj|BAB69820.1| putative ATP-dependent RNA helicase [Streptococcus sobrinus]
          Length = 522

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 124/343 (36%), Gaps = 34/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     ++      QA+++A
Sbjct: 23  EPSPIQELTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIDIDNNVIQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ +   + V  + G      + KAL       AHI++GT     D
Sbjct: 77  PTRELAVQSQEELFRFGREKGVKVRSVYGGSSIDKQIKALRS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLV 436
            I+   L L  +        DE    G        ++        LL +AT     + + 
Sbjct: 133 LIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISHVPDERQTLLFSATMPDAIKRIG 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +  + + +  KI  K      ++   I +   ++     +++  E  +   +  +     
Sbjct: 193 VKFMKEPEHVKIAAKELTSDNVEQFYIRVKEREKFDTMTRLIDVEQPELSIVFGRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D
Sbjct: 249 ----KRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILVATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 305 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGKSVTFVSPN 346


>gi|259416782|ref|ZP_05740702.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B]
 gi|259348221|gb|EEW59998.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B]
          Length = 490

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 136/354 (38%), Gaps = 46/354 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA------AAVEAGGQAV 325
           SPT  Q  AI   L+          +     G+GKT    + M        A     +++
Sbjct: 24  SPTPIQAGAIPAALEGRDV------LGIAQTGTGKTASFTLPMITRLARGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y ++ ++   ++ G +    +  A++R       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDAAIDR----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     ++VDE  R      +   ++       + + TP   +TL  ++
Sbjct: 134 LLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIER-------IFSLTPFTRQTLFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL------SEGKKAYWICPQIE 493
               +I +IT       P +  I       E IE+  V+        EG +   +  ++ 
Sbjct: 187 TMAPEIERITNTFLSG-PERVEIARQATTSETIEQAVVMFKASRKDREGSEKRRVLRELI 245

Query: 494 EKK---------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ++           N ++ V+      + +    A IHG +    +   +D F++GT K+
Sbjct: 246 NQEGEAVKNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLDGFRDGTLKI 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           L+A+ V   G+DV   S +   +        +H++ GR GR       I L  P
Sbjct: 306 LVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRI-GRTGRAGRNGKAITLCSP 358


>gi|218248985|ref|YP_002374356.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 8801]
 gi|257062070|ref|YP_003139958.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
 gi|218169463|gb|ACK68200.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8801]
 gi|256592236|gb|ACV03123.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
          Length = 485

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 133/367 (36%), Gaps = 40/367 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  I F+ PT+ Q+ AI  +L+          + Q   G+GKT    + +   V+     
Sbjct: 18  LEAIGFTSPTEIQQKAIPLLLEGHD------ILGQSQTGTGKTAAYSLPILEQVDVKNPN 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LAQQ    +K ++   ++ +  + G      + ++LER       I++G
Sbjct: 72  VQALILTPTRELAQQVALALKDFSTERRLYILTVYGGQSIERQIRSLER----GVQIVVG 127

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D +   KL        +L   DE    G    +K            +  TP  R
Sbjct: 128 TPGRVIDLLDRKKLSFEGLRWAVLDEADEMLSMGFIDDVKKI----------LKQTPDTR 177

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +    S       +       + P+   +         IE+    +  G         I 
Sbjct: 178 STACFSATMPREIRELVNQFLKSPVTVAVEQPQAAPSKIEQHLYNVPRGWSKLKALQPIL 237

Query: 494 EKKESN----FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E +       F    +    L         S+   HG +S   +E ++  F+ G  KL++
Sbjct: 238 ELEAPESAIIFVRTKQTAAELTCKLQEAGQSVDEYHGNLSQSQRERLVYRFREGKIKLVV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT +   G+DV + S +I  +        +H++ GR GR  +  + I L  P   +    
Sbjct: 298 ATDIAARGLDVENLSHVINYDLPDNAETYIHRI-GRTGRAGKTGTAISLVEPIDRRMIKQ 356

Query: 607 RLSVLKN 613
               L+ 
Sbjct: 357 IERKLRQ 363


>gi|157691224|ref|YP_001485686.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
 gi|157679982|gb|ABV61126.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
          Length = 513

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 156/443 (35%), Gaps = 44/443 (9%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   K +  + F   T  Q   I   LQ+         I Q   G+GKT    I +   
Sbjct: 28  SESLMKAINRMGFEEATPIQAETIPLGLQNKDV------IGQAQTGTGKTAAFGIPLVEK 81

Query: 318 VEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++      QA+I+AP   LA Q  E + K  Q+ +  V  I G      + ++L++    
Sbjct: 82  IDPASPNIQAIIIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRSLKK---- 137

Query: 375 QAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
             HII+GT     D I            ++L   DE    G  + +   L+   +    L
Sbjct: 138 NPHIIVGTPGRLLDHINRRTMRLQNVETVVLDEADEMLNMGFIEDIESILSNVPSEHQTL 197

Query: 425 LMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           L +AT   PI R +    + + +  K+  K      I+   + I+   +     +++  +
Sbjct: 198 LFSATMPAPIKR-IAERFMTNPEHVKVKAKEMTVSNIQQFYLDIHERKKFDTLTRLLDIQ 256

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
             +   +  +         +  V+           +   IHG ++   +   +  FK G+
Sbjct: 257 SPELSIVFGRT--------KRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGS 308

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   G+D+   + +   +      + +H++ GR GR       +    P   
Sbjct: 309 IDVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRI-GRTGRAGRTGMAMTFITPREK 367

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL--HDSLLE-- 657
                     K   D       D     + ++   +   +         +     LLE  
Sbjct: 368 DMLRAIEQTTKRKMDRMKEPTLDEAIEGQQQVTVDRLRTIISENNLNFYMTAAAELLEDH 427

Query: 658 ---IARKDAKHILTQDPDLTSVR 677
                   A  ++T++PD T VR
Sbjct: 428 DSVTVVAAAIKMMTKEPDATPVR 450


>gi|40788956|dbj|BAA04879.2| KIAA0111 [Homo sapiens]
          Length = 412

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 61  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 114

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 115 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 170

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 171 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 230

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 231 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 283

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 284 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 343

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 344 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 402

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 403 EMPMNVADL 411


>gi|60652753|gb|AAX29071.1| DEAD box polypeptide 48 [synthetic construct]
          Length = 412

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 60  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 114 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 170 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 230 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 282

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 283 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 342

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 343 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 401

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 402 EMPMNVADL 410


>gi|114051321|ref|NP_001039653.1| eukaryotic initiation factor 4A-III [Bos taurus]
 gi|154147644|ref|NP_001093663.1| eukaryotic initiation factor 4A-III [Sus scrofa]
 gi|157821621|ref|NP_001093628.1| eukaryotic initiation factor 4A-III [Rattus norvegicus]
 gi|126308661|ref|XP_001370945.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction
           Complex With A Trapped Dead-Box Helicase Bound To Rna
           [Monodelphis domestica]
 gi|109825494|sp|Q2NL22|IF4A3_BOVIN RecName: Full=Eukaryotic initiation factor 4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|123780398|sp|Q3B8Q2|IF4A3_RAT RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|251764755|sp|A6M931|IF4A3_PIG RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|77748037|gb|AAI05876.1| Eukaryotic translation initiation factor 4A, isoform 3 [Rattus
           norvegicus]
 gi|84708898|gb|AAI11185.1| Eukaryotic translation initiation factor 4A, isoform 3 [Bos taurus]
 gi|85792296|gb|ABC84196.1| eukaryotic translation initiation factor 4A isoform 3 [Sus scrofa]
 gi|149054966|gb|EDM06783.1| rCG33565, isoform CRA_a [Rattus norvegicus]
 gi|296476097|gb|DAA18212.1| eukaryotic initiation factor 4A-III [Bos taurus]
          Length = 411

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 60  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 114 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 170 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 230 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 282

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 283 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 342

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 343 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 401

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 402 EMPMNVADL 410


>gi|209515859|ref|ZP_03264721.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209503707|gb|EEA03701.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 467

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 82/460 (17%), Positives = 168/460 (36%), Gaps = 60/460 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + +   T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 24  LTQLGYIEMTPIQAASLPIALAGQD------LIAQAKTGSGKTAAFSLALLARLDARKFD 77

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    I V  + G  P   +  +LE      AH+++
Sbjct: 78  TQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH----GAHVVV 133

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D ++   L+L     +++DE  R           K               +TL
Sbjct: 134 GTPGRIMDHLERGTLVLQALNTLVLDEADRMLDMGFFDDIAKVARQ------CPKERQTL 187

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    +SE ++ + +   +   
Sbjct: 188 LFSATYPEGIAKLSQQFLRNP--KEVKLAERHDDSKIRQRFYEVSEDERLHAVGLLLNHY 245

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 246 RPVSTIAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATD 305

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH------------ 597
           V   G+D+     +I  +         H++ GR GR ++    + L              
Sbjct: 306 VAARGLDIAQLEAVINVDVTPDPEVHTHRI-GRTGRADQEGWALSLASMDEMGRVGGIEQ 364

Query: 598 -PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLIA 647
                   +    +   + D  L   E L+           G++LG     +G     I 
Sbjct: 365 AHKRDVEWHKLAELKAASNDPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFAGSQIG 424

Query: 648 QPELHDS--LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +  + D    + + R  A+  + +      ++G+ +++ L
Sbjct: 425 KINVTDMSTYVAVERSIAREAVRRLSA-GKLKGRKVKVRL 463


>gi|290968757|ref|ZP_06560294.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781053|gb|EFD93644.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 520

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 86/439 (19%), Positives = 162/439 (36%), Gaps = 61/439 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-----QAVI 326
            PT  Q  +I   LQ          I Q   G+GKT    I +   +         Q V+
Sbjct: 25  EPTPIQAESIPVALQG------ADMIGQAQTGTGKTAAFGIPVLEKILKNEPTQSIQTVV 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           ++P   LA Q  E +    Q T I    I G      + + L +       II+ T    
Sbjct: 79  LSPTRELAMQVAEELNHLAQCTTIQALPIYGGQDMERQLRRLRK----HPQIIVATPGRL 134

Query: 387 QDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVL 437
            D ++         + ++L   DE    G    +            +M+ATP   +TL+ 
Sbjct: 135 MDHMKRGTIDLSDIHTIVLDEADEMLDMGFIDDIN----------TIMSATPDTRQTLLF 184

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++     I ++ E     +P    +       ++IE+  +   + +K   +C  ++ ++ 
Sbjct: 185 SATMPKPIQQLAETFL-HEPQIIRMKAKEVTMDLIEQSYIETPDRQKFDVLCRLLDLQEP 243

Query: 498 -------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     R V E   +L +   SS  I HG ++   ++SV+  F+  T  +L+AT V
Sbjct: 244 DLAIIFVRTKRRVDEVAEALKKRGYSSEGI-HGDLTQAKRDSVIRQFREKTIDILVATDV 302

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +   +      + +H++ GR GR  +         P   ++      +
Sbjct: 303 AARGLDISGVTHVFNYDLPQDPESYVHRV-GRTGRAGKSGEATTFVIPREMEHLRAIERL 361

Query: 611 LK------------NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI 658
           +K               +G   A      R+       ++SG  +    +   H   + +
Sbjct: 362 IKRHITRRKAPTLAQALEGAQQA----AIRRLINTAEDERSGQYRGNAEELLSHYDSITL 417

Query: 659 ARKDAKHILTQDPDLTSVR 677
               A  +LT++PD+T V+
Sbjct: 418 -LSAAIKLLTKEPDMTPVK 435


>gi|229109888|ref|ZP_04239470.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15]
 gi|228673542|gb|EEL28804.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15]
          Length = 458

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPFILSGKD------IIGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|262173979|ref|ZP_06041656.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
 gi|261891337|gb|EEY37324.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
          Length = 422

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 124/355 (34%), Gaps = 29/355 (8%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q+ AI  +LQ          +     G+GKT    + +                  
Sbjct: 29  PTPIQQQAIPHVLQGKDV------LAGAQTGTGKTAAFGLPLIQRFIEQPWVREENSKEI 82

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I T
Sbjct: 83  RALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQLNHLR----GGVDILIAT 138

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D      L L  V E        R+           +L   +P+ +TL  ++  D
Sbjct: 139 PGRLLDHAHVKSLFLGKV-EVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFD 197

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
             I  +  +   R P++  + P N   E ++++   + + +K   +   I  K       
Sbjct: 198 SKIKAVAYR-IMRDPVEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLV 256

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               R   +      +        I+G  S   ++  +D FK G  + LIAT V   G+D
Sbjct: 257 FTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKVGKVRALIATDVAARGLD 316

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           +     ++  +        +H++ GR GR       + L              +L
Sbjct: 317 IAQLEQVVNYDMPFKAEDYVHRI-GRTGRAGLAGLAVSLLSHDEEPQLEAIERLL 370


>gi|194760837|ref|XP_001962639.1| GF14338 [Drosophila ananassae]
 gi|190616336|gb|EDV31860.1| GF14338 [Drosophila ananassae]
          Length = 1472

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/347 (16%), Positives = 122/347 (35%), Gaps = 42/347 (12%)

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------A 324
            PT  Q+ +I  I +          +     GSGKT   L+ + + +    Q        A
Sbjct: 1080 PTPIQKVSIPVINEGRD------MMACAQTGSGKTAAFLLPILSKLLEDPQDLEIGKPQA 1133

Query: 325  VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            V+++P   LA Q +   +K+   + + + I+ G     H+ + + +      H++I T  
Sbjct: 1134 VVVSPTRELAIQIFNEARKFGFESYLKISIVYGGTSFKHQNECITK----GCHVLIATPG 1189

Query: 385  LFQDSIQY--------YKLILVIVDEQHRFGV----QQRLKLTQKATAPHVLLMTATPIP 432
               D +            ++L   D     G     ++ +      +    L+ +AT   
Sbjct: 1190 RLLDFVDRTFITFNDTRFVVLDEADRMLDMGFSESMRKIMTHRTMRSEHQTLMFSATFPE 1249

Query: 433  --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
              + L    L +     I         ++  I  +N+ ++  + ++++  +         
Sbjct: 1250 EIQRLAGEFLNNYVFVTIGVVGGACSDVQQTIYEVNKFNKRSKLMEILREDANGTIVFV- 1308

Query: 491  QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                      +   +   S           IHG      +E  +  FK G  K+LIAT+V
Sbjct: 1309 --------ETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRDFKTGKMKVLIATSV 1360

Query: 551  IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
               G+D+ +   ++  +  +     +H++ GR GR          + 
Sbjct: 1361 AARGLDIKNVKHVVNFDMPNNIADYVHRI-GRTGRVGNNGRATSFFD 1406


>gi|8444|emb|CAA37037.1| unnamed protein product [Drosophila melanogaster]
          Length = 575

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 134/378 (35%), Gaps = 41/378 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       +           +     GSGKTL  ++     +          G  
Sbjct: 159 APTAIQAQGWPIAMSG------SNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPI 212

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  ++ +    + G  P+  + + L+R       I+I T 
Sbjct: 213 ALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE----IVIATP 268

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     S    +   +++DE  R          +K  +         P  +TL+ +
Sbjct: 269 GRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR------PDRQTLMWS 322

Query: 439 SLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    ++ ++ E   G      +    +   + I +V++       E K    +    + 
Sbjct: 323 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDT 382

Query: 495 KKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           +  V+        F      IHG  S  +++ V+  F++G   +L+A
Sbjct: 383 SESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 442

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV     +I  +        +H++ GR GR     +    +    +K +   
Sbjct: 443 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRI-GRTGRSNTKGTSFAFFTKNNAKQAKAL 501

Query: 608 LSVLKNTEDGFLIAEEDL 625
           + VL+        A E+L
Sbjct: 502 VDVLREANQEINPALENL 519


>gi|127511465|ref|YP_001092662.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126636760|gb|ABO22403.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 599

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 83/383 (21%), Positives = 139/383 (36%), Gaps = 32/383 (8%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + +  PT  Q ++I  ++           + Q   G+GKT    + +  A++     
Sbjct: 21  LDELGYEKPTPIQAASIDPLMAGKD------ILGQAQTGTGKTGAFALPLLNAIDPNRNV 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    Y++    + V  I G      +  AL R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLNALRR----GPQIVV 130

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT     D ++   L L  ++       +    L          ++  TP  R L L S 
Sbjct: 131 GTPGRVMDHMRRGTLKLETLNALVL--DEADEMLKMGFIDDIEWILEHTPQERQLALFSA 188

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
              +  K       + P+   I   +   E IE+  V +S+  K   +   +E +     
Sbjct: 189 TMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVLEVENTEGI 248

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                   S VE    L     +S + +HG M+   +E  +D  K G   +LIAT V   
Sbjct: 249 IIFVRTRNSCVELAEKLEARGYAS-SPLHGDMNQQARERAVDQLKRGKLDILIATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV     +I  +  +   A +H++ GR GR       IL       +   T     K+
Sbjct: 308 GLDVERIGHVINYDIPYDTEAYVHRI-GRTGRAGRTGMAILFVTHREMRMLRTIERATKS 366

Query: 614 TEDGF------LIAEEDLKQRKE 630
                       +AE  L +  E
Sbjct: 367 RISPMNVPSPETVAERRLSRLGE 389


>gi|330829717|ref|YP_004392669.1| ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
 gi|328804853|gb|AEB50052.1| ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
          Length = 466

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 143/387 (36%), Gaps = 46/387 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +P+  Q+ AI  +L           +     G+GKT    + M   +    +        
Sbjct: 23  TPSPIQQQAIPAVLAGRD------LMAAAQTGTGKTAGFTLPMLQRLMESKRKVSPNRVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA Q  E ++ Y ++  +   ++ G +    +  A  R       +++   
Sbjct: 77  ALVLTPTRELAAQVGESVRNYGKHLPMRSHVVFGGVSINPQMMATRR----GLDVLVACP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGV-----QQRLKLTQKATAPHVLLMTAT--PI 431
               D     ++++ ++ ++++DE  R          R  L         LL +AT    
Sbjct: 133 GRLIDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRRILALMPKKRQNLLFSATFADE 192

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L    L +  + ++  + +  + I+ ++ P ++ +++     +V S   +   +  +
Sbjct: 193 IRELATGLLDNPAVIEVAPRNSTAERIEQLVHPCDKANKIALLSHLVTSNNWQQVLVFTR 252

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    + +  R     +    S A IHG  S   +   +  FK+G+ K+L+AT + 
Sbjct: 253 T--------KHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGSVKVLVATDIA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     ++     +     +H++ GR GR       I L      K       + 
Sbjct: 305 ARGLDIDKLPQVVNFELPNVAEDYVHRI-GRTGRAGAAGHAISLVAADEGKLIKAIERLT 363

Query: 612 KNTE-----DGFLIAEEDLK--QRKEG 631
           K +       GF  + E L    R  G
Sbjct: 364 KQSIPCEQVAGFEASRETLDNIARGIG 390


>gi|228968588|ref|ZP_04129573.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791080|gb|EEM38697.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 481

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 137/371 (36%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYDHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+   L L  +        DE    G   ++   + +  T    +L +AT  
Sbjct: 129 TPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +I         I+  +      ++      V + E   +  I 
Sbjct: 189 EDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEAIEDEKFSLLKDVTMIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  +R          +        IHG M   D+  VMD F+ G  + L+AT 
Sbjct: 249 CRTQENVDHVYRQ--------LKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENRFLEEIED 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|15599145|ref|NP_252639.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|218889767|ref|YP_002438631.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|9950138|gb|AAG07337.1|AE004813_4 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|218769990|emb|CAW25752.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 449

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 127/344 (36%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQ------- 323
           +PT  Q  AI   L+          +     G+GKT    + +   +   G Q       
Sbjct: 23  TPTPIQAQAIPPALKGRD------LLAAAQTGTGKTAGFALPLLQRLTLEGPQVAANSVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA+Q +  ++ Y Q+  +   +  G +    +   L +       I++ T 
Sbjct: 77  ALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRK----GVDILVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++++ +L  +++DE  R        L          L  A P  R  +L 
Sbjct: 133 GRLLDLYRQNAVKFAQLQALVLDEADRM-------LDLGFARELDELFAALPRKRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +   +   R P+   + P N   + + +  V + + +KA   C  ++  +  
Sbjct: 186 SATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWR 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R  VE    L +    +   IHG      +   +  FK G   LL+AT V  
Sbjct: 246 QALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            G+D+ +  +++  +        +H++ GR GR       + L 
Sbjct: 306 RGLDIEEMPLVVNFDLPIVAEDYVHRI-GRTGRAGASGQAVSLV 348


>gi|87121489|ref|ZP_01077378.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
 gi|86163332|gb|EAQ64608.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
          Length = 617

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 132/365 (36%), Gaps = 35/365 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            P+  Q  +I  +L+          + Q   G+GKT    + + + +   +   Q +++A
Sbjct: 30  QPSPIQAQSIPHLLEGHD------LLGQAQTGTGKTAAFALPLLSRINPKDKNTQLLVLA 83

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  + Y +N      + I G M    + + L R       +++GT     
Sbjct: 84  PTRELAIQVSEAFQTYARNIPDFHVLPIYGGMSYDTQLRQLRR----GVQVVVGTPGRVM 139

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPI--PRTL 435
           D I+   L        +L   DE  R G    ++           + L +AT     R +
Sbjct: 140 DHIRRKTLKLDSLQALVLDEADEMLRMGFIDDVEWILEHTPEQRQIALFSATMPSVIRQV 199

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L +    KI  K A    I      ++ + ++    +++         I  + +  
Sbjct: 200 ANRHLNNPKEVKIVTKTATNTSITQKYWQVSGLHKLDALTRILEMSEHDGMIIFVRTK-- 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                 + VE    L     +    ++G +S   +E  ++  K G   +L+AT V+  G+
Sbjct: 258 -----AATVELAEKLTARGHA-CEALNGDISQNLRERTVERIKRGQIDILVATDVVARGL 311

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+   S ++  +  +   + +H++ GR GR     + IL       +         +   
Sbjct: 312 DIDRISHVVNYDIPYDTESYVHRI-GRTGRAGRTGNAILFVAHRERRMLQAIERATRQPI 370

Query: 616 DGFLI 620
           +   +
Sbjct: 371 ERMQL 375


>gi|315182662|gb|ADT89575.1| DEAD-box ATP dependent DNA helicase [Vibrio furnissii NCTC 11218]
          Length = 406

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 132/361 (36%), Gaps = 33/361 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT+ Q  AI  +L+          +     G+GKT    + +                 
Sbjct: 12  TPTEIQAQAIPHVLEGKDV------LAGAQTGTGKTAAFGLPLIQRFVDHPLQREPNSKD 65

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+++ P   LAQQ ++ ++ Y Q +++ +    G      +++ L     G A I+I 
Sbjct: 66  IRALVLVPTRELAQQVFDNLQSYAQGSELKIVTAYGGTSMNVQKQNLR----GGADILIA 121

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D      L L   +        + L +        VL        +TL  ++  
Sbjct: 122 TPGRLLDHAHVKTLYLGNAEALVLDEADRMLDMGFMPDIQRVLRKMQH-ERQTLFFSATF 180

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-- 499
           D  I     +   + P++  + P N   + +E++   + + +K   +   I  +      
Sbjct: 181 DSKIKAFAHR-MMQNPVEVQVTPSNSTADTVEQMVYPVDKKRKRELLAYLIGSRNWQQVL 239

Query: 500 ----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   +      +      A I+G  S   ++  +D FK+G  + LIAT V   GI
Sbjct: 240 VFTRTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAARGI 299

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+     ++  +        +H++ GR GR  +    + L    +S +    L  ++   
Sbjct: 300 DIAQLEQVVNFDMPFKAEDYVHRI-GRTGRAGKAGFAVSL----MSHDEQPLLEAIERLL 354

Query: 616 D 616
           D
Sbjct: 355 D 355


>gi|293376696|ref|ZP_06622919.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
 gi|325845185|ref|ZP_08168493.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
 gi|292644653|gb|EFF62740.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
 gi|325488781|gb|EGC91182.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
          Length = 368

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 130/370 (35%), Gaps = 39/370 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SPT  QE     I      KN    I Q   G+GKTL  L+ +   +       QA+I+ 
Sbjct: 23  SPTPIQEQCYPLI------KNYKDVIAQAQTGTGKTLAFLLPLFENISPDIEATQALIIT 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  +   I V    G      +   L++      H+II T     D
Sbjct: 77  PTRELALQITEEANKLAEIRNINVLAAYGGRNIGSQLNKLKKS----IHLIIATPGRLID 132

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP--RTLV 436
            ++           +++   D+    G +  +   L Q       L  +AT  P  + L 
Sbjct: 133 HLERQTITLDKVKSVVIDEADQMLLMGFRNEVDQILRQTPRNRQTLCFSATMAPNVKRLA 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                D  +  I  K    + IK  ++      +     +V+  +      I  + + + 
Sbjct: 193 YRYSYDPTMITIEAKKVAVESIKQELVETTDRWKADALCQVLEEDNPFLAIIFCRTKRRA 252

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           +  F  + +R          +  +IH  ++   +E ++ SF+    + LIAT V   G+D
Sbjct: 253 DQLFAKMKQR--------GFNTQVIHSDIAQNKRERILKSFREADLQYLIATDVASRGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + I   +        +H++ GR GR  E     L   P            L+    
Sbjct: 305 ISGVTHIYNYDIPETPETYIHRI-GRTGRAGEEGYTCLFVAPKDDFELNAIERKLR---- 359

Query: 617 GFLIAEEDLK 626
            F I    LK
Sbjct: 360 -FNIPRRHLK 368


>gi|228994170|ref|ZP_04154070.1| ATP-dependent RNA helicase dbpA [Bacillus pseudomycoides DSM 12442]
 gi|228765622|gb|EEM14276.1| ATP-dependent RNA helicase dbpA [Bacillus pseudomycoides DSM 12442]
          Length = 481

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 140/371 (37%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L ++ +  PT+ Q   I   L+      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTSLKYEQPTEVQGKVIPVALE------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALILTPTRELAAQVKEDITNIGRFKRIKATAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+           L++   DE    G   ++   + +  T    +L +AT  
Sbjct: 129 TPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTMLFSATLP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +I         I+ +++ +   ++      +   E   +  I 
Sbjct: 189 EDVENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREEEKFSLLQDITTLENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  FR          +        IHG M   D+ +VM+ FK G  + L+AT 
Sbjct: 249 CRTQENVDHVFRQ--------LKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P   +       
Sbjct: 301 VAARGIDIENITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFVTPYEERFLVEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|295688310|ref|YP_003592003.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295430213|gb|ADG09385.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 475

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 123/361 (34%), Gaps = 27/361 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  AI  +LQ          +     G+GKT    + +   +          G +
Sbjct: 24  EPTPIQAQAIPVVLQGKD------LLGIAQTGTGKTAAFALPILQRLAEDRKPAPRRGFR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++++P   LA Q  E  K Y  +  + V  I G +    + KAL     G   +++ T 
Sbjct: 78  CLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMKALA----GGIDVLVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +     I+   +        Q L L        +     T   + L  ++    
Sbjct: 134 GRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIASQL-TKNRQNLFFSATMPS 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------ 497
           +I K+      + P++  + P     E I++  + +   +K   +     +         
Sbjct: 193 EIGKLAG-ELLKDPVQVSVAPQATTVERIDQRVLFIEAQRKRPLLAELFADSSFSRTIVF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   +R            A IHG  +   +E  + +FK G  + L+AT +   GIDV
Sbjct: 252 TRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRALVATDIAARGIDV 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            D S +I     +   A +H++ GR  R  +    I                  + T   
Sbjct: 312 NDVSHVINYELPNVPEAYVHRI-GRTARKGKDGIAISFCADDERNLLKDIQKATRQTIPA 370

Query: 618 F 618
           F
Sbjct: 371 F 371


>gi|254506284|ref|ZP_05118427.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
 gi|219550764|gb|EED27746.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
          Length = 426

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/385 (17%), Positives = 143/385 (37%), Gaps = 32/385 (8%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           N   +I + +        T  Q+ AI    +          +     G+GKT    + + 
Sbjct: 7   NFSPEIVKALTECGYEKLTPVQQKAIPFARKGHD------ILANAQTGTGKTAAFALPIV 60

Query: 316 AAVEAG--------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             +            +AVI+AP   LA Q    I+ YT+ T +    I G    + ++KA
Sbjct: 61  QNILDNEKPRQRHQTRAVILAPTRELAAQIASNIQDYTKYTDVKTVAIYGGAKMSSQQKA 120

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           LE        +++ T     + +    + L  + E   F    R+      +A   ++  
Sbjct: 121 LEA----GVDVLVATPGRLIEHMDMNNVSLANL-EFLVFDEADRMLDMGFISAIESIMAG 175

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
               P+T++ ++     ++ +  K   R+P +  +   N   + I  +   + + +K   
Sbjct: 176 VNTKPQTMLFSATFSAQMNTLAGK-ILRQPKRVSVARENVTADTIAHVVYPVEQERKREL 234

Query: 488 ICPQIEEKKESN---FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGT 541
           +   I  K       F +  E  N L +          + HG  +   +   +D FK+G 
Sbjct: 235 LSELIGRKNWQQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALDEFKSGK 294

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            +++IAT V   G+D+ +   ++  +        +H++ GR GR  +  + +   +    
Sbjct: 295 ARVMIATDVAARGLDIQNLPHVVNFDMPFLAEDYVHRI-GRTGRAGQRGNAVSFVNREEE 353

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLK 626
                  +++     G  I  ++L+
Sbjct: 354 LTLQQVETLI-----GQRIYRKELE 373


>gi|81429227|ref|YP_396228.1| putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610870|emb|CAI55922.1| Putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 530

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 160/444 (36%), Gaps = 52/444 (11%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   K +    F   T  Q   I   L           I Q   G+GKT    + +   
Sbjct: 9   SEPIMKAISRAGFEEATPIQGETIPLALAGKDV------IGQAQTGTGKTAAFGLPILQN 62

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++      QA+I++P   LA Q  E + +  ++ +  V+++ G      + ++L+     
Sbjct: 63  LDLDNPDIQALIISPTRELAIQTQEELYRLGRDRKAKVQVVYGGADIRRQIRSLKD---- 118

Query: 375 QAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
              I++GT     D I            L+L   DE    G    +   + Q       L
Sbjct: 119 HPQILVGTPGRLLDHINRRTVKLDHVKTLVLDEADEMLDMGFVDDIESIIKQVPEKRQTL 178

Query: 425 LMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           L +AT   PI + +  + + + ++ K+  K      I    +     ++     ++   +
Sbjct: 179 LFSATLPAPIMK-IGKSFMTNPEMIKVKSKELTADLIDQYYVRAKDFEKFDIMTRLFDVQ 237

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
             +   I  +         +  V+      +    +   IHG +S   + SV+ SFK G 
Sbjct: 238 SPELTLIFGRT--------KRRVDELTRGLKARGYNAEGIHGDLSQQKRMSVLKSFKAGR 289

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   G+D+   + +   +      + +H++ GR GR  +    +    P   
Sbjct: 290 LDVLVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGKSGVSVTFVTP--- 345

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP--ELHDSLLEIA 659
            N    L +++            L+   E E       G     +A     +    L   
Sbjct: 346 -NEMEYLRIIEELT---KKRMLPLQPPSEKEAFK----GQLAAAVADINSMIEKGQLAKY 397

Query: 660 RKDAKHILTQ--DPDLTSVRGQSI 681
            ++A+ +L Q  D +L SV  ++I
Sbjct: 398 NEEAEELLKQFSDVELASVLLKTI 421


>gi|6324217|ref|NP_014287.1| Dbp2p [Saccharomyces cerevisiae S288c]
 gi|118284|sp|P24783|DBP2_YEAST RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD
           box protein 2; AltName: Full=p68-like protein
 gi|5272|emb|CAA36874.1| p68 protein [Saccharomyces cerevisiae]
 gi|1302034|emb|CAA95991.1| DBP2 [Saccharomyces cerevisiae]
 gi|285814541|tpg|DAA10435.1| TPA: Dbp2p [Saccharomyces cerevisiae S288c]
          Length = 546

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 132/368 (35%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L        M+ I     GSGKTL   +     + A        G  
Sbjct: 135 KPTGIQCQGWPMAL----SGRDMVGI--AATGSGKTLSYCLPGIVHINAQPLLAPGDGPI 188

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q      K+  +++I    + G +P++ + + L R +     I+I T 
Sbjct: 189 VLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSE----IVIATP 244

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 245 GRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 304

Query: 434 TLVLTSLGDIDISKI------TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              L +    D  ++               I  V+    + D + + L+    + +    
Sbjct: 305 VKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTL 364

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I         S  R   +    L E    ++AI HG     +++ V+  F+NG   +++A
Sbjct: 365 IF-------ASTKRMCDDITKYLREDGWPALAI-HGDKDQRERDWVLQEFRNGRSPIMVA 416

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV   + +I  +        +H++ GR GR     + I  +           
Sbjct: 417 TDVAARGIDVKGINYVINYDMPGNIEDYVHRI-GRTGRAGATGTAISFFTEQNKGLGAKL 475

Query: 608 LSVLKNTE 615
           +S+++   
Sbjct: 476 ISIMREAN 483


>gi|325982424|ref|YP_004294826.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325531943|gb|ADZ26664.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 476

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 131/346 (37%), Gaps = 30/346 (8%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q+ AI  IL+          +     G+GKT    + M   +E+            
Sbjct: 28  PTPIQQQAIPIILKGFDV------MGGAQTGTGKTAGFTLPMLQKLESHANSSTSPAKHP 81

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q YE ++ Y +   +   +I   +    +  A+         I++ 
Sbjct: 82  TRALILVPTRELAIQVYESVRAYGKYVALKSAVIYDGVNIDVQIAAIRS----GVEILVA 137

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +Q   LIL  + E        R+           ++       + L+ ++  
Sbjct: 138 TPGRLLDHLQQKNLILSKI-EILILDEADRMLDMGFLPDIKQIIQMLPDQRQNLMFSATF 196

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-- 499
             +I K+  K   + PI   +   N + ++I  +   +    K  ++   I++K      
Sbjct: 197 SEEIKKLAGK-ILKSPILIEVAKQNSVSDLISHIVYSVESKNKQEFLIDMIKKKNLQQVL 255

Query: 500 -FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F       + L +   S     ++IHG  + + +   +D+FK G  ++L+AT V   G+
Sbjct: 256 IFTRTKHGADHLAQKLNSRDILSSVIHGDRNQLQRTQALDNFKCGLIRILVATDVAARGL 315

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           D+ + + +I     +     +H++ GR GR       I       +
Sbjct: 316 DIEELTHVINFELPNNPEDYVHRI-GRTGRAGAKGFAISFVSREET 360


>gi|162459683|ref|NP_001105241.1| DEAD box RNA helicase1 [Zea mays]
 gi|39653663|gb|AAR29370.1| DEAD box RNA helicase [Zea mays]
          Length = 566

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/362 (20%), Positives = 131/362 (36%), Gaps = 38/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q          M +   ++ I Q   GSGKTL  L+     V A        G  
Sbjct: 173 EPTPIQSQGWP-----MLKGRDLIGIAQ--TGSGKTLSYLLPGLVHVGAQPRLEQGDGPI 225

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA Q  E   K+   ++     + G  P+  + + L R       I+I T 
Sbjct: 226 VLILAPTRELAVQIQEESTKFGSYSRTRSTCVYGGAPKGPQIRDLRR----GVEIVIATP 281

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D ++           L+L   D     G + +++    Q       L  +AT    
Sbjct: 282 GRLIDMLEAGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPRE 341

Query: 434 T--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L    L +     I             I+ +    E I+    +LS+      I   
Sbjct: 342 VEALARQFLQNPYKVIIGSPELKANHSIQQIVEVISDHESIQDSVKLLSDLMDGSRILIF 401

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           ++ KK+ +  +       L      +++I HG  +  +++ V+  FK+G   ++ AT V 
Sbjct: 402 LQTKKDCDKIT-----RQLRMDGWPALSI-HGDKAQAERDYVLAEFKSGKSPIMAATDVA 455

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D   +I  +        +H++ GR GR     +    +    +K S   + +L
Sbjct: 456 ARGLDVKDIKCVINYDFPTTLEDYIHRI-GRTGRAGASGTAFTFFTHANAKFSRNLVKIL 514

Query: 612 KN 613
           + 
Sbjct: 515 RE 516


>gi|55823472|ref|YP_141913.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55739457|gb|AAV63098.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 528

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 126/343 (36%), Gaps = 34/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     +   E   QA+++A
Sbjct: 23  QPSPIQELTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLDKIRTEENTIQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ ++  + V  + G      + KAL       AHI++GT     D
Sbjct: 77  PTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLV 436
            I+   L L  +        DE    G        +++       LL +AT     + + 
Sbjct: 133 LIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRIG 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +  + D +  KI  K      +    I +   ++     +++  +  +   +  +     
Sbjct: 193 VQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPELSIVFGRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +        IHG +    +  ++  FKNG   +L+AT V   G+D
Sbjct: 249 ----KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILVATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +   + +   +      + +H++ GR GR  +    I    P 
Sbjct: 305 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGQSGQSITFVSPN 346


>gi|308185825|ref|YP_003929956.1| ATP-dependent RNA helicase dbpA [Pantoea vagans C9-1]
 gi|308056335|gb|ADO08507.1| ATP-dependent RNA helicase dbpA [Pantoea vagans C9-1]
          Length = 460

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 90/456 (19%), Positives = 170/456 (37%), Gaps = 65/456 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           S T  Q + +  ILQ    +       Q   GSGKT    I +   +++     QA+I+ 
Sbjct: 25  SMTPVQAATLPAILQGRDVR------AQAKTGSGKTAAFGIGLLHHIDSTRFQTQALILC 78

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +++  + T+ I V  + G  P + +R +L        HI++GT     
Sbjct: 79  PTRELADQVGNVLRQLARFTRNIKVLTLCGGQPMSAQRDSLVHP----PHIVVGTPGRIL 134

Query: 388 DSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLTSLG 441
           D I    L L  +     DE  R      L   +        ++ ATP   +TL+ ++  
Sbjct: 135 DHINRENLKLDQLSTLVLDEADRMLEMGFLNDMET-------IIEATPASRQTLLFSATW 187

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---- 497
              I+ I+ +   ++   +V+         I++     S  +K   +   + +++     
Sbjct: 188 PDGITAISTRF--QRDALSVVTEDVSELPSIDQQFFEASHNEKLGLLIALLSDRQPSSCV 245

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +   +   +       S   +HG +   D+E V+  F NG+ ++L+AT V   G+
Sbjct: 246 VFCNTKRECDDVAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVATDVAARGL 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN-- 613
           D+   ++++           LH++ GR  R  E    + L        ++     L+   
Sbjct: 306 DIKSLAMVVNYQLAWDPEVHLHRI-GRTARAGEHGVAVSLVAADEMARAHALEDFLQQKL 364

Query: 614 -----------TEDGFLIAEEDL--------KQRKEGEILG--IKQSGMPKFLIAQPEL- 651
                      +      A   L        K R  G+ILG    ++G     I +  L 
Sbjct: 365 PWVSASTLKKGSSKPLPAAMMTLCIDGGRKAKIR-PGDILGALTGEAGYRAEQIGKIVLT 423

Query: 652 --HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
             H  +   A +    ++        ++G++ R +L
Sbjct: 424 PTHAYVAIEANQAKAALVKL--KQGKIKGKTCRAIL 457


>gi|114567412|ref|YP_754566.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338347|gb|ABI69195.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 530

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 131/364 (35%), Gaps = 33/364 (9%)

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            E    + ++  + Q I       PT  Q  +I   +  +        + Q   G+GKT 
Sbjct: 3   FENFYSMGLKTDLLQMIDEKGFEKPTPIQVKSIPIAMAGLD------LMGQAQTGTGKTA 56

Query: 309 VALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              I +   V  G   QA+++ P   LA Q  E I   ++  +I V  I G      + +
Sbjct: 57  SFGIPILNRVIKGEGLQALVLCPTRELAVQVTEEISSLSRRMRIQVLAIYGGQSIELQLR 116

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGV--QQRLKLTQ 416
           +L R       II+GT     D +            ++L   DE    G     +  L+Q
Sbjct: 117 SLRR----NPEIIVGTPGRLMDHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQ 172

Query: 417 KATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                   L +AT     R L    +   +I  I         I+     +N   ++   
Sbjct: 173 CPRERQTFLFSATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQYYYQVNSRRKIETL 232

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
            +++ ++      I  +         +   +    +      +   +HG MS  +++ VM
Sbjct: 233 CRIIDAQQPPISLIFCRT--------KRNADELARVLTSRGYNADALHGDMSQRERDHVM 284

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F+ G  K+L+AT +   G+D+   + +   +      + +H++ GR GR       I 
Sbjct: 285 HGFRQGNTKILVATDLAARGLDIELVTHVFNFDIPEDLDSYIHRV-GRTGRAGRSGIAIT 343

Query: 595 LYHP 598
           L  P
Sbjct: 344 LVEP 347


>gi|228918066|ref|ZP_04081594.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841546|gb|EEM86662.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 481

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 140/378 (37%), Gaps = 40/378 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  ++ L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   
Sbjct: 12  SKEVRRALTGLGYERPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+++ P   LA Q  E I    +  +I    I G  P A ++  L++    
Sbjct: 66  VEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ---- 121

Query: 375 QAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
           + HI++GT     D I+           L++   DE    G   ++   + +  T    +
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 425 LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT       L  T +      +I         I+  +  +   +++     V   E 
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIEN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I  + +E  +  +R          +        IHG M   D+  VMD F+ G  
Sbjct: 242 PDSCIIFCRTQENVDHVYRQ--------LDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKF 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + L+AT V   GID+ + + +I  +      + +H+  GR GR       I    P   +
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYEDR 352

Query: 603 NSYTRLSVLKNTEDGFLI 620
                   +     GF I
Sbjct: 353 FLEEIEVYI-----GFAI 365


>gi|114794629|pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
           Trapped Dead-Box Helicase Bound To Rna
 gi|114794633|pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
           Trapped Dead-Box Helicase Bound To Rna
 gi|217035449|pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
 gi|217035453|pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
          Length = 413

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 60  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 114 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 170 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 230 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 282

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 283 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 342

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 343 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 401

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 402 EMPMNVADL 410


>gi|327351907|gb|EGE80764.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 1205

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 97/516 (18%), Positives = 179/516 (34%), Gaps = 76/516 (14%)

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
             +++ +  P  IF +  DV+   I+                   EA   L      I  
Sbjct: 474 NFSKLKLPKPEAIFGDEDDVDLKAIDP------------------EADDFLA-----ITS 510

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL--AGQIALLLMRKQFKK 249
              +KK  P I      ++     KDF         L  +E+     ++  + +R     
Sbjct: 511 KARKKKDLPPINH--EKMNYEPFRKDFYTEPVDLSELTDEEVAALRLELDGIKVRGVDVP 568

Query: 250 EIGIPINVEGKIAQKI--LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           +     +  G   Q +  +R + +  PT  Q  AI  I+           I     GSGK
Sbjct: 569 KPVQKWSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDV------IGVAKTGSGK 622

Query: 307 TLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           T+  L+ M   +          G   +IM P   LA Q ++  K + +   +      G 
Sbjct: 623 TIAFLLPMFRHIMDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALSLRAVCAYGG 682

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQ 410
            P   +   L+R     A I++ T     D +           ++  V++DE  R     
Sbjct: 683 APIKDQIAELKR----GAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMG 738

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
                        +L    P  +T++ ++    ++  +  K    KP++ ++   + +  
Sbjct: 739 FEPQVM------RILGNVRPQRQTVLFSATFPRNMEALARKTLT-KPVEIIVGGRSVVAP 791

Query: 471 VIERLKVVLSEGKKAYWICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---I 518
            I ++  V +E  K   +   +         E+ +   F    E  + L           
Sbjct: 792 EITQVVEVRNEDTKFVRLLALLGDLYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPC 851

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG    +D++S +D FK G   +LIAT+V   G+DV    +++  +A +     +H+
Sbjct: 852 MSIHGGKDQVDRDSTIDDFKAGVFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR 911

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
             GR GR     + +        + S      LK +
Sbjct: 912 -AGRTGRAGNTGTAVTFLTEDQERYSVDISKALKQS 946


>gi|114569874|ref|YP_756554.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris
           MCS10]
 gi|114340336|gb|ABI65616.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
          Length = 498

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/365 (19%), Positives = 134/365 (36%), Gaps = 42/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI   L           +     G+GKT    + +   +  G       +++
Sbjct: 23  EPTPIQAGAIPAALAGRDV------LGIAQTGTGKTASFTLPLIERLSRGRAKARMPRSL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+AP   LA Q  E  + Y++  ++ + ++ G +    + + L +     A ++I T   
Sbjct: 77  IIAPTRELAAQCAENFETYSKGQKLSMALLIGGVAFGPQEEILNK----GADVLIATPGR 132

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGV----QQRLKLTQKATAPHVLLMTATPIPR 433
             D     KL++  V        D     G     ++   L   A     L  +AT    
Sbjct: 133 LLDHFGRGKLLMTGVQMLVVDEADRMLDMGFIPDLEKIFSLVPPAPRRQTLFFSATMPKE 192

Query: 434 TLVLTSLGDID-----ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
              L      D     +S+  +  A    +   +   +   + +   + +  EG K   I
Sbjct: 193 IQSLVDRFLRDPERVEVSRPAQTGANITQLMIRLTDNSAKAKRLALRQAMSREGVKNGII 252

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    SN +  V+      +    S A IHG +    + + +  FK GT + L+A+
Sbjct: 253 F--------SNRKRDVDVVARSLQRHGFSAAPIHGDLDQSARTATLADFKAGTLRFLVAS 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S +   +  H     +H++ GR GR  +    + ++ P   K+    L
Sbjct: 305 DVAARGLDIPDVSHVFNYDMPHHADDYVHRI-GRTGRAGKSGESVTIFAPGDEKSLAAVL 363

Query: 609 SVLKN 613
            ++K 
Sbjct: 364 KLIKE 368


>gi|298708482|emb|CBJ30606.1| eukaryotic initiation factor 4A [Ectocarpus siliculosus]
          Length = 404

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 137/344 (39%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ A+K IL           I Q   G+GKT    +++   ++   A  QA+++A
Sbjct: 53  KPSAIQQRAVKPILMGKD------CIAQAQSGTGKTATFAVSILQKIDVAAADCQALVLA 106

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++      Q+ V    G        + L+       HI++GT     D
Sbjct: 107 PTRELAQQIVKVVRALGDFMQLQVHACVGGTAVRDDIRTLQN----GVHIVVGTPGRVYD 162

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I    L        +L   DE    G + ++    +     V         +  + ++ 
Sbjct: 163 MISRGALRLDRVGLFVLDEADEMLSRGFKDQIYDVFQYLPERV---------QVALFSAT 213

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKK--- 496
             +D+ ++T +    +P++ ++       E I++  + +     K   +C   E      
Sbjct: 214 MPLDVLEVTNRFM-PEPVRILVKKDELTLEGIKQFYIAVDREEWKLDTLCDLYETLTITQ 272

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+  +   +    +I+ +HG M   +++ +M  F++G+ ++LI T ++  
Sbjct: 273 AIIYCNTRRRVDWLSEKMQERDFTISCMHGDMGQGERDVIMREFRSGSSRVLITTDLLAR 332

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GIDV   S++I  +        +H++ GR GR       I    
Sbjct: 333 GIDVQQVSLVINYDLPTNRENYIHRI-GRSGRFGRKGVAINFVT 375


>gi|220681312|gb|ACL80032.1| vasa-like protein [Bombyx mori]
          Length = 601

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 133/351 (37%), Gaps = 37/351 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q++AI      M     ++       GSGKT   L+ +   +             
Sbjct: 202 KPTPIQKNAIPI----MMSGRDLMG--CAQTGSGKTAAFLVPIINMLLQDPKDLISENGC 255

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q +I++P  +L  Q +   +K++  + + V +  G     H+   + R      HI+
Sbjct: 256 AQPQVIIVSPTRVLTLQIFNEARKFSYGSVLKVAVAYGGTAVRHQGDNIAR----GCHIL 311

Query: 380 IGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T     D ++     +  +  V++DE  R      +   +K      ++   T   +T
Sbjct: 312 VATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLHPTMVE--TTKRQT 369

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI  +  +      +   +  +      +E++ + +++ +K   +   IEE
Sbjct: 370 LMFSATFPEDIQHLAGRFLN-NYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLIEE 428

Query: 495 KKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   ++        + IHG     ++E  + +FK+G   +L+AT
Sbjct: 429 NDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVAT 488

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            V   G+D+ +  I++  +        +H++ GR GR       +  Y   
Sbjct: 489 AVAARGLDIKNVDIVVNYDLPKSIDEYVHRI-GRTGRVGNRGKAVSFYDSD 538


>gi|42521033|ref|NP_966948.1| DEAD-box ATP dependent DNA helicase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410774|gb|AAS14882.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 408

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/343 (22%), Positives = 140/343 (40%), Gaps = 34/343 (9%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIM 327
           F PT  Q  AI   LQ          +     G+GKTL   I + A +      G A+++
Sbjct: 23  FVPTPIQIQAIPLALQGKD------ILGSAQTGTGKTLAFAIPLVAKLLNEPNTGSALVI 76

Query: 328 APIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P   LA Q    I+K   QN+ + V ++ G  P   +   L++    +  I+IGT    
Sbjct: 77  VPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLNQLQK----KPQIVIGTPGRI 132

Query: 387 QDSIQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLTSL 440
            D I+   LI     ++++DE  R          ++       +M   P I +TL+ ++ 
Sbjct: 133 IDHIERKTLITRNVSVLVLDETDRMFDMGFGVQIEE-------IMKHLPKIRQTLMFSAT 185

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
              DI K+ EK    +P +  +         I++  V  SE +K   +  Q+ +++    
Sbjct: 186 LPGDIVKLAEKYLN-RPERISVDCEATTSVKIKQEIVYASESEKYEKLVTQLCQREGSII 244

Query: 497 -ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   ++  +       S   IHG +    +E V++SF+ G  ++++AT V   G+
Sbjct: 245 IFVKTKRGADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVASRGL 304

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           D+     +I  +A       +H++ GR  R       +    P
Sbjct: 305 DIPHIQHVINYDAPQSQADYIHRI-GRTARAGAEGYALSFVTP 346


>gi|3986287|dbj|BAA34994.1| DjVLGB [Dugesia japonica]
          Length = 781

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 142/371 (38%), Gaps = 46/371 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------EA 320
           PT  Q++AI  IL+    ++ M        GSGKT   LI +   +             A
Sbjct: 207 PTPIQKNAIPAILE---HRDIM---ACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 260

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             + +I+AP   LA Q     +K++ NT +   ++ G      + + ++       H+++
Sbjct: 261 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQM----GCHLLV 316

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP------HVLLM 426
            T     D I+  K+        +L   D     G + +++   + +          L+ 
Sbjct: 317 ATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMF 376

Query: 427 TATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +AT     + L    L +     +    +    IK  II +  +++ +  LK + +    
Sbjct: 377 SATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEIIYMTDVEK-LNYLKNIFNTTAP 435

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              I   +E KK        +            ++ IHG  S +++E+ +  F+NG C +
Sbjct: 436 NTLILIFVETKK------GADSLARFLLSKGYPVSSIHGDRSQVEREAALSMFRNGQCPI 489

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT V   G+D+ +   +I  +        +H++ GR GR          Y    +  +
Sbjct: 490 LVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRI-GRTGRLGNHGRATSFYVDKNNNIA 548

Query: 605 YTRLSVLKNTE 615
              + +LK   
Sbjct: 549 IDLVDLLKEAN 559


>gi|326915068|ref|XP_003203843.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Meleagris
           gallopavo]
          Length = 369

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 18  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 71

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 72  PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 127

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 128 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 187

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 188 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 240

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 241 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 300

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 301 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 359

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 360 EMPMNVADL 368


>gi|323140806|ref|ZP_08075722.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium sp.
           YIT 12067]
 gi|322414722|gb|EFY05525.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium sp.
           YIT 12067]
          Length = 529

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/340 (20%), Positives = 123/340 (36%), Gaps = 33/340 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAP 329
            P+  Q + I  +L+          I Q   G+GKT    I +  A+      QA+IM P
Sbjct: 28  EPSPIQAATIPLVLEG------NDVIGQAQTGTGKTAAFGIPLVQAITDFKHIQALIMTP 81

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E + K  +  ++    + G  P   + +AL         I+IGT     D 
Sbjct: 82  TRELAIQVAEEVGKIGRTRRVRALPVYGGQPIERQIRALRN----NVQIVIGTPGRLIDH 137

Query: 390 IQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           I            L+L   DE    G    +           ++ +     +TL+ ++  
Sbjct: 138 INRGTIRLDHIKFLVLDEADEMLDMGFVDDI---------EEIMRSLPVERQTLLFSATM 188

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
              I  +T+K        T+      +  + +       + +    +     + K   F 
Sbjct: 189 PRPILSLTKKYMKAPKNVTISKEELTVPLIEQYYFETKDKIEGLCRLLDAEIDGKLIIFC 248

Query: 502 SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
              +  + L    +S       +HG +S   ++ VM  F+ G   +LIAT V   GIDV 
Sbjct: 249 RTKKGVDDLSIALSSRGYMAEGLHGDLSQNQRDRVMKKFREGAVDVLIATDVAARGIDVD 308

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + + +I  +      + +H++ GR GR       +    P
Sbjct: 309 NITHVINFDIPQDPESYVHRI-GRTGRAGNTGVAMTFITP 347


>gi|148244296|ref|YP_001218990.1| ATP-dependent RNA helicase RhlE [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326123|dbj|BAF61266.1| ATP-dependent RNA helicase RhlE [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 422

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 129/363 (35%), Gaps = 36/363 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
            P+  Q  +I  IL           +     G+GKT    + +   +           + 
Sbjct: 23  EPSPIQNQSIPAILNGKDV------MAAAQTGTGKTACFALPILEILSKKKPTKSNQVRT 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y +   +   ++ G +    + +   R+  G   I++ T  
Sbjct: 77  LILTPTRELAIQVSDSVTTYGKYLPLKSSVVFGGVKINPQMQ---RLCSG-VDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     S+++  L +V+ DE  R      +   +       +L       +TL+ ++
Sbjct: 133 RLLDLYSQNSVKFDMLEIVVFDEADRMLDMGFINDIK------RILKILPSKKQTLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I  +  K     P++  + P N   + I++    + + KK   +   I+E     
Sbjct: 187 TFSNKILTLA-KSLVNNPVEISVTPRNSTVKAIKQWIHPVDKSKKHALLTHLIQEHNWHQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +  E        IH   S   +   +  FKN    +L+AT +   
Sbjct: 246 VLVFSRTKYGANRIVNQLEKKKIRATAIHSNKSQGARTRALLDFKNHEVNVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GI++     +I  +  +     +H++ GR GR       I L     +K  +    +++N
Sbjct: 306 GIEINQLPHVINFDLPYVPEDYVHRI-GRTGRAGSKGEAISLVSADEAKQLFDVECLIQN 364

Query: 614 TED 616
             D
Sbjct: 365 KLD 367


>gi|6137207|gb|AAF04377.1|AF188678_1 P72 DEAD box protein [Pisum sativum]
          Length = 716

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 136/367 (37%), Gaps = 44/367 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-------VEAGGQA 324
           +PT  Q  +    LQ          +     GSGKTL  L+             + G   
Sbjct: 174 APTPIQAQSWPIALQSKD------IVAIAKTGSGKTLGYLLPAFITSSALIITPKWGPTI 227

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++   G LA Q  +   K+++ ++I    + G  P+  + + ++R     A I++ T  
Sbjct: 228 LVLHQQGELATQIQDEAVKFSKTSRIACTCLYGGAPKGPQLRDIDR----GADIVVATPG 283

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRT 434
              D ++  +        L+L   D     G + +++            L+ TAT     
Sbjct: 284 RLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNGVPARRQTLMFTATWPKEV 343

Query: 435 L-----VLTSLGDIDISKITEKPAGRK-PIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +L +   ++I  + E  A +       ++        +E +     +G K    
Sbjct: 344 RKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAHMEKQRRLESILQSQDQGSKIIIF 403

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C        S  +   +   +L   F +  A I G  S  D++ V++ F++G   +L+AT
Sbjct: 404 C--------STKKMCDQLARNLTRQFGA--AAIRGDKSQADRDHVLNQFRSGRTPVLVAT 453

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV D  +++           LH++ GR GR          +    +K++   +
Sbjct: 454 DVAARGLDVKDIRVVVNYTFPTGVEDYLHRI-GRTGRAGATGIAYTFFGDQDAKHASDLI 512

Query: 609 SVLKNTE 615
            +L+   
Sbjct: 513 KILEGAN 519


>gi|73540602|ref|YP_295122.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 537

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/400 (17%), Positives = 149/400 (37%), Gaps = 39/400 (9%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +   ++      ++ +I + +       PT  Q  AI  +L           +     G+
Sbjct: 49  QNAAEQTFESFGLDARILRALSEQGYTKPTPIQAQAIPVVLLGKDV------MGAAQTGT 102

Query: 305 GKTLVALIAMAAAVEA-----------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           GKT    + +   +               +A+++ P   LA Q Y+ + +Y ++T +   
Sbjct: 103 GKTAGFALPIIQRLLPMASASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRST 162

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++ G +    +  AL R       I++ T     D +Q   + L  V +        R+ 
Sbjct: 163 VVFGGVDMNPQTDALRR----GVEILVATPGRLLDHVQQKSVNLSQV-QMLVLDEADRML 217

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                     ++       +TL+ ++    +I ++      ++P+   +   N  +E + 
Sbjct: 218 DMGFLPDLQRIINLLPAQRQTLLFSATFSPEIKRLAASYL-KQPVTIEVARSNSTNENVR 276

Query: 474 RLKVVLSEGKKAYWICPQIEEKKES----------NFRSVVERFNSLHEHFTSSIAIIHG 523
           ++   + +G+K   +   + ++ E           N +    R     E    + A IHG
Sbjct: 277 QMVYQVEDGQKQAAVVHLLRQRAEQGLSKQCIVFVNSKIGCSRLARHLEREGINAAAIHG 336

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
             +  ++   ++ FKNGT   L+AT V   G+D+ D   +I  +        +H++ GR 
Sbjct: 337 DKTQTERMQTLEGFKNGTIDALVATDVAARGLDIADMPCVINFDLPFSAEDYVHRI-GRT 395

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLK-----NTEDGF 618
           GR       + ++ P   +       ++K      T +GF
Sbjct: 396 GRAGASGDALSIFVPGDERLLTDIEKLIKRSVPRGTLEGF 435


>gi|33152628|ref|NP_873981.1| ATP-dependent RNA helicase [Haemophilus ducreyi 35000HP]
 gi|33148852|gb|AAP96370.1| cold-shock DEAD box protein-A [Haemophilus ducreyi 35000HP]
          Length = 606

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/420 (19%), Positives = 154/420 (36%), Gaps = 50/420 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q+  I  +L           +     GSGKT    + + A ++      Q ++MA
Sbjct: 28  TPSPIQQECIPHLLAG------SDVLGMAQTGSGKTAAFSLPLLAQIDPNQRHPQMLVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  +++T+N   I V  + G      R     R     + +++GT     
Sbjct: 82  PTRELAIQVADACEQFTKNMKGIRVVTVYGG----QRYDIQLRALKQGSQVVVGTPGRIL 137

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D I+   L        +L   DE  R G    +           ++       +T + ++
Sbjct: 138 DHIRRGTLNLSTLKSIVLDEADEMLRMGFIDDV---------ETVMAELPEKHQTALFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKKES 498
                I +IT +         +        ++ +   +V      +A     ++EE   +
Sbjct: 189 TMPEPIRRITRRFMSDPKEVKIQATQRSAPDITQSYWLVNGFRKNEALLRFLEVEEFDAA 248

Query: 499 NFRSVVER----FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
              +  +        L E      A ++G M+   +E  +D  K+G   +L+AT V   G
Sbjct: 249 IIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARG 308

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S+++  +      + +H++ GR GR       +L   P   +       ++K  
Sbjct: 309 LDVERISLVVNYDIPLDSESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEQLMKKP 367

Query: 615 EDGFLIAEED--LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            D   I      +++R+E              +  Q E HD  LE  R+  +++ T D D
Sbjct: 368 IDPVAIPNHQVLMEKRREK---------FKAKISKQLEHHD--LEKYRELLENLFTADQD 416


>gi|289742973|gb|ADD20234.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 616

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 133/368 (36%), Gaps = 43/368 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q       +           +     GSGKTL  ++     +          G  A
Sbjct: 156 PTPIQAQGWPIAMSG------HNFVGIAKTGSGKTLGYILPAIVHINNQQPLSRGEGPIA 209

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LAQQ  +   ++  ++ +    + G  P+  + + L+R       I+I T  
Sbjct: 210 LVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE----IVIATPG 265

Query: 385 LFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D +        +   +++DE  R          +K      +L    P  +TL+ ++
Sbjct: 266 RLIDFLAAGATNLKRCTYLVLDEADRMLDMGFEPQIRK------ILSQIRPDRQTLMWSA 319

Query: 440 LGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               ++ ++ E   G      +    +   + I +VIE       +  K   +  QI + 
Sbjct: 320 TWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVIEICD-ENDKETKLKSLLSQIYDT 378

Query: 496 KES--------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            E+          +  V+        F      IHG  S  +++ V+  F++G   +L+A
Sbjct: 379 GENPGKIIIFVETKRRVDHLVRYIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 438

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV     +I  +        +H++ GR GR     +    +    +K S   
Sbjct: 439 TDVAARGLDVDGIKYVINFDYPQSSEDYIHRI-GRTGRSNTKGTSYAFFTRNNAKQSKAL 497

Query: 608 LSVLKNTE 615
           L VLK   
Sbjct: 498 LEVLKEAN 505


>gi|330804914|ref|XP_003290434.1| hypothetical protein DICPUDRAFT_37328 [Dictyostelium purpureum]
 gi|325079445|gb|EGC33045.1| hypothetical protein DICPUDRAFT_37328 [Dictyostelium purpureum]
          Length = 600

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 138/382 (36%), Gaps = 42/382 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +    +L+   +  PT  Q   I  I+           I     GSGKTL  L+ M   
Sbjct: 35  TEKIHLMLKKFQYEKPTPIQSQTIPAIMSGRD------LIGIARTGSGKTLAFLLPMFRH 88

Query: 318 VEAGGQA--------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           + A  +         +IM+P   LA Q +   KK+T+N  + V  I G    + +   L+
Sbjct: 89  ILAQPKTVPGDGMIGLIMSPTRELALQIFSECKKFTKNLGLRVACIYGGASISEQIADLK 148

Query: 370 RIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           R     A I++ T     D +           ++  +++DE  R                
Sbjct: 149 R----GADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQIMCVIDN 204

Query: 422 HVLLMTATPIPRTLVLTSLGDIDIS----KITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                   P  +T++ ++     +     KI  KP         I+  + ID+ +E    
Sbjct: 205 IR------PDRQTIMFSATFPPKVENAAKKILTKPLEIIAGGRSIVSSD-IDQHVEVRPS 257

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534
                +    +     + +   F +  E  ++L     SS      +HG     D++  +
Sbjct: 258 ETRFRRLIELLSLWYHKGQILIFTNRQETTDNLFRQLASSQYQCLSLHGSKDQTDRDETI 317

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FKN    +LIAT +   G+D+ D ++++  +        +H++ GR GR     +   
Sbjct: 318 TDFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRV-GRTGRAGNKGTAYT 376

Query: 595 LYHPPLSKNSYTRLSVLKNTED 616
              P   + S + +  L+ +  
Sbjct: 377 FITPEEERYSPSIIKALEQSGS 398


>gi|292493472|ref|YP_003528911.1| DEAD/DEAH box helicase [Nitrosococcus halophilus Nc4]
 gi|291582067|gb|ADE16524.1| DEAD/DEAH box helicase domain protein [Nitrosococcus halophilus
           Nc4]
          Length = 504

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/360 (20%), Positives = 131/360 (36%), Gaps = 35/360 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             +   I Q I +    +PT+ Q  AI  +L           + Q   G+GKT    I +
Sbjct: 13  FAISAPILQAIKQVGYETPTQIQARAIPHLLAG------CDLMGQAQTGTGKTAAFAIPI 66

Query: 315 AAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALER 370
              +       QA+++ P   LA Q  E  + Y +  +   V  I G     ++ + L+R
Sbjct: 67  LNRLALTRKEPQALVLVPTRELAIQVAEAFQTYARYLEDFRVLPIYGGQSMGNQLRQLKR 126

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATA 420
                 H+I+GT     D ++   L        +L   DE  + G  + ++    Q    
Sbjct: 127 ----GVHVIVGTPGRIMDHLRRKSLLLDKLTTVVLDEADEMLKMGFIEDVEWILGQMPAK 182

Query: 421 PHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
               L +AT     R +    L      KI  K A    I      ++   ++    +++
Sbjct: 183 RQTALFSATMPSSVRHIASRHLHSPHDIKIKGKTASLPAINQRYCLVSDFHKLDALTRML 242

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
             E   A  I  +         +   E           + A ++G M+   +E V+   K
Sbjct: 243 EVEEYDATIIFVRT--------KIATEELAKKLSARGYAAAALNGDMAQAQREKVVGQLK 294

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             T  +++AT V   G+DV   S ++  +  +     +H++ GR GR     +  L   P
Sbjct: 295 KNTLDIIVATDVAARGLDVKRISHVVNYDIPYDTGTYIHRI-GRTGRAGRTGTATLFVAP 353


>gi|253999447|ref|YP_003051510.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|253986126|gb|ACT50983.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4]
          Length = 468

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 128/361 (35%), Gaps = 45/361 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +PT  Q  AI ++L           +     G+GKT    +     +         G + 
Sbjct: 25  TPTPIQAQAIPEVLAGHD------LMASAQTGTGKTAAFTLPALNLLADIHPSKSRGPRI 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  +  +KY +  +     I G MP   + K L +       I++ T  
Sbjct: 79  LVLTPTRELAAQVNDAARKYGKFMRARTVSIVGGMPYPLQNKLLSQP----LDILVATPG 134

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKA--TAPHVLLMTAT---PI 431
              D ++  +        LIL   D     G    ++   +A       L+ +AT   PI
Sbjct: 135 RLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERINEALPRERQTLMFSATFEGPI 194

Query: 432 PRTLVLTSLGDIDISKIT---EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
              +  T L D  + +I    EK A  +     +  +N  ++++E L +   +  +A   
Sbjct: 195 A-NIAKTLLKDPKVIQIAAQKEKHANIEQRLHFVDDMNHKNKLLEHLLIA-PDVNQAIVF 252

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    ++ +   +             A +HG M+   +   +   ++G  ++L+AT
Sbjct: 253 ---------TSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVRVLVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV   + +I  +   F    +H++ GR GR       +               
Sbjct: 304 DVAARGIDVQGITHVINYDLPKFAEDYVHRI-GRTGRAGNTGVAVSFASHADRHQLRKIE 362

Query: 609 S 609
            
Sbjct: 363 Q 363


>gi|223043911|ref|ZP_03613952.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus capitis SK14]
 gi|314934151|ref|ZP_07841512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
 gi|222442626|gb|EEE48730.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus capitis SK14]
 gi|313653056|gb|EFS16817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
          Length = 511

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/350 (20%), Positives = 134/350 (38%), Gaps = 37/350 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L ++ F  PT  Q+ +I   L+          + Q   G+GKT    I +   V  + G 
Sbjct: 17  LESMGFKEPTPIQKDSIPYALEG------DDILGQAQTGTGKTGAFGIPLIEKVVGQQGV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q++I+AP   LA Q  E ++++++   + V  + G MP   + KAL+R       I++GT
Sbjct: 71  QSLILAPTRELAMQVAEQLREFSKGQNVQVVTVFGGMPIERQIKALKR----GPQIVVGT 126

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +          + LIL   DE    G    ++                   +T
Sbjct: 127 PGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPSDQ--------RQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I  + ++   + P     +     D  I+    ++ E +K       ++ 
Sbjct: 179 MLFSATMPKAIQDLVQQFM-KTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +      F     R + L     S       +HG ++   +  V+  FKN    +L+AT
Sbjct: 238 HQPDLAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|254476293|ref|ZP_05089679.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
 gi|214030536|gb|EEB71371.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
          Length = 501

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 139/369 (37%), Gaps = 46/369 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           SPT  Q  AI   L+          +     G+GKT    + M   +  G       +++
Sbjct: 24  SPTPIQAGAIPPALEGRDV------LGIAQTGTGKTASFTLPMITLLARGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    YT++  +   ++ G +    +   +++       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYTKHLNLTKALLIGGVSFKEQDALIDK----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KLIL     ++VDE  R      +   ++       +   TP   +TL  ++
Sbjct: 134 LLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIER-------IFGLTPFTRQTLFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL------SEGKKAYWICPQIE 493
               +I +IT       P +  +       E I +  V+        EG +   +   + 
Sbjct: 187 TMAPEIERITNTFL-SAPERIEVARQATTSENITQGVVLFKASRRDREGSEKRKLLRHLI 245

Query: 494 EKK---------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +++           N ++ V+      + +  + A IHG +    +   +D F+ G  + 
Sbjct: 246 DQEGEKCTNAIIFCNRKTDVDICAKSLKKYGYNAAPIHGDLDQSQRMKTLDEFREGNLRF 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+A+ V   G+DV   S +   +        +H++ GR GR     + +++  P   KN 
Sbjct: 306 LVASDVAARGLDVPTVSHVFNFDVPSHAEDYVHRI-GRTGRAGRDGTAMMICVPKDEKNL 364

Query: 605 YTRLSVLKN 613
                +++ 
Sbjct: 365 EDIERLVQQ 373


>gi|47568574|ref|ZP_00239273.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|47554816|gb|EAL13168.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
          Length = 481

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 142/378 (37%), Gaps = 40/378 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  ++ L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   
Sbjct: 12  SKEVRRALTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+++ P   LA Q  E I    +  +I    I G  P A ++  L++    
Sbjct: 66  VEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ---- 121

Query: 375 QAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
           + HI++GT     D I+           L++   DE    G   ++   + +  T    +
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT       L+       + I  K AG     I+  +  +   +++     V   E 
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIEN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I  + +E  +  +R                   IHG M   D+  VM+ F+ G  
Sbjct: 242 PDSCIIFCRTQENVDHVYRQ--------LNRVNYPCDKIHGGMVQEDRFGVMNDFRKGKF 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + L+AT V   GID+ + + +I  +      + +H+  GR GR       I    P   +
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYEER 352

Query: 603 NSYTRLSVLKNTEDGFLI 620
                 + +     GF I
Sbjct: 353 FLEEIEAYI-----GFAI 365


>gi|311694220|gb|ADP97093.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 457

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 95/459 (20%), Positives = 173/459 (37%), Gaps = 62/459 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + F  PT+ Q  AI   L           I     GSGKT    I++   +      
Sbjct: 17  LNQLGFAQPTEIQAKAIAPGLAGKD------IIAMAKTGSGKTAAFGISLVERLNPRLFA 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    I V  + G +    +  +L       AHI++
Sbjct: 71  VQALVLCPTRELADQVAKAIRELARARDNIKVLTLCGGVAIGPQIGSL----SHGAHIVV 126

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT    QD ++   L LV     ++DE  R      L +  +     +L  T  P  +T+
Sbjct: 127 GTPGRIQDHLRKQTLSLVRLKTVVLDEADRM-----LDMGFQEAMEDILSQT-PPSRQTM 180

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I +++ K   + P+           + IE L   +S   K+  I   + E+
Sbjct: 181 MFSATWPAPIRELS-KQYQKSPVDVRAEDTGDNPD-IEELFYEVSPQSKSDAIVALLSER 238

Query: 496 KESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +  +        +   +    L E    S   +HG +   D++SV+  F N +C +L+AT
Sbjct: 239 QPESCIVFCTTKQQCDDMAAELGERG-FSALPLHGDLEQRDRDSVLVRFGNQSCSILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT-- 606
            V   G+D+    ++I            H++ GR GR  E    +    P          
Sbjct: 298 DVAARGLDIKSLPLVINAEPARDPEVHTHRI-GRTGRAGEQGHAVTFCTPAQGHKITRIE 356

Query: 607 -----------RLSVLKNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLI 646
                         +L       + A + L            G++LG    ++G+P   +
Sbjct: 357 SERGRSVTWGDTEKLLATPLKSVVPAMKTLCIAGGRKDKVRPGDVLGALTGEAGLPGKAV 416

Query: 647 AQPELHDS--LLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            + +L D    + + +  A   L +  +   V+G+ IR+
Sbjct: 417 GKIDLFDHQCFVAVEKSLAAKALARL-ESGKVKGRKIRV 454


>gi|149204620|ref|ZP_01881585.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035]
 gi|149141879|gb|EDM29929.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035]
          Length = 506

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 135/354 (38%), Gaps = 46/354 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L           +     G+GKT    + M + +  G       +++
Sbjct: 24  TPTPIQAEAIPHALVGRDV------LGIAQTGTGKTASFTLPMLSLLSRGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y+++ ++   ++ G +    + K +++       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDK----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     ++VDE  R      +   ++       + + TP   +TL  ++
Sbjct: 134 LLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIER-------IFSLTPFTRQTLFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-------LKVVLSEGKKAYWICPQI 492
               +I +IT       P +  +       E IE+        +   ++ +K   +   I
Sbjct: 187 TMAPEIERITNTFL-SNPARVEVARQATASETIEQGVVMFKPSRRENADSEKRKLLRALI 245

Query: 493 EEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           + +           N +  V+        +    A IHG +    +   +D F+ GT + 
Sbjct: 246 DREGAACSNAIIFCNRKIDVDVVAKSLIKYGYDAAPIHGDLDQSQRTRTLDGFRAGTLRF 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           LIA+ V   G+DV   S +   +        +H++ GR GR       +++ +P
Sbjct: 306 LIASDVAARGLDVPAVSHVFNFDVPSHAEDYVHRI-GRTGRAGRSGKALMICNP 358


>gi|149189303|ref|ZP_01867589.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148836862|gb|EDL53813.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 431

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/385 (16%), Positives = 138/385 (35%), Gaps = 32/385 (8%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
            +I Q +        T  Q+ AI    +          +     G+GKT    + +   +
Sbjct: 10  SEIVQALTECGYEKLTPVQQQAIPHARRGHD------ILAHAQTGTGKTAAFSLPIIQQI 63

Query: 319 EAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                       +A+I+AP   L  Q    I+ YTQ   + V  + G    + + + LE 
Sbjct: 64  VDTPKARTRGAVRALILAPTRELVDQIANNIESYTQYVDVSVAAVFGGAKMSSQERKLEA 123

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
                  I++ T     + ++   + L  + E   F    R+      +A   ++ +   
Sbjct: 124 ----GVDILVATPGRLIEHLELGNVKLANL-EFLVFDEADRMLDMGFISAIRTIMSSVNS 178

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
            P+T++ ++     ++ + +    RKP + ++   N   + +  +   + E +K   +  
Sbjct: 179 QPQTMLFSATSSPQMNALAQD-LLRKPKRIIVNAENSTADTVAHVVYPVDEDRKLELLSE 237

Query: 491 QIEEKKESN---FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            I  K       F +  E  N + +          + HG  +   +   ++ FK G  ++
Sbjct: 238 LIGRKNWQQVLVFVNYKETANEVVKELKLDGIKAVLCHGDKAQSSRRRALEEFKTGKARV 297

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           ++AT V   G+D+     ++  +        +H++ GR GR  +    +           
Sbjct: 298 MVATEVAARGLDIQGLPHVVNYDMPFLAEDYVHRI-GRTGRAGQQGHAVSFVSREEELTL 356

Query: 605 YTRLSVLKN-----TEDGFLIAEED 624
               +++++        G+  A  D
Sbjct: 357 VQIENLIQHRIKRIQLAGYEPANRD 381


>gi|195480298|ref|XP_002101215.1| GE17497 [Drosophila yakuba]
 gi|194188739|gb|EDX02323.1| GE17497 [Drosophila yakuba]
          Length = 962

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 90/458 (19%), Positives = 160/458 (34%), Gaps = 54/458 (11%)

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
           ++     + F  I +P      E       R     +   ++   ++   F++       
Sbjct: 194 ENLEPFHKDFYNI-HPNTLAKSEQQVADIRRELEITVSGNELPHPVV--SFEESSLPAHV 250

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +E    Q   +     PT  Q       L        ++ I Q   GSGKTL  ++    
Sbjct: 251 IEEMKRQGFTK-----PTAIQSQGWPIAL----SGRDLVGIAQ--TGSGKTLAYMLPAIV 299

Query: 317 AVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRK 366
            +          G  A+++AP   LAQQ    ++ Y      +I    I G   +  + +
Sbjct: 300 HIGNQPPILRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQAR 359

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQ 416
            L+R       +II T     D ++           L+L   D     G   Q R  + Q
Sbjct: 360 DLDR----GVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQ 415

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKI----TEKPAGRKP-----IKTVIIPINR 467
                 V++ +AT       L      D  +I        A         I T +    R
Sbjct: 416 IRPDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQR 475

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           +  ++  +    +       I   +E       +  VE    +      +   IHG  + 
Sbjct: 476 LVRLLNEIAPTKNSANNGNKIIIFVET------KIKVEDILQIIRTEGYTATSIHGDKTQ 529

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++SV+  F+NG   +LIAT V   G+DV D   +I  +  +     +H++ GR GR +
Sbjct: 530 NERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRI-GRTGRCQ 588

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           ++ +    + P  +K +   +SVL+        A  DL
Sbjct: 589 QLGTAYTFFTPDNAKQARELISVLEEAGQTPSQALLDL 626


>gi|194897089|ref|XP_001978588.1| GG17597 [Drosophila erecta]
 gi|190650237|gb|EDV47515.1| GG17597 [Drosophila erecta]
          Length = 955

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 90/458 (19%), Positives = 160/458 (34%), Gaps = 54/458 (11%)

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN 256
           ++     + F  I +P      E       R     +   ++   ++   F++       
Sbjct: 196 ENLEPFHKDFYNI-HPNTLAKSEQQVADIRRELEITVSGNELPHPVV--SFEESSLPAHV 252

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
           +E    Q   +     PT  Q       L        ++ I Q   GSGKTL  ++    
Sbjct: 253 IEEMKRQGFTK-----PTAIQSQGWPIAL----SGRDLVGIAQ--TGSGKTLAYMLPAIV 301

Query: 317 AVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRK 366
            +          G  A+++AP   LAQQ    ++ Y      +I    I G   +  + +
Sbjct: 302 HIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQAR 361

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQ 416
            L+R       +II T     D ++           L+L   D     G   Q R  + Q
Sbjct: 362 DLDR----GVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQ 417

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKI----TEKPAGRKP-----IKTVIIPINR 467
                 V++ +AT       L      D  +I        A         I T +    R
Sbjct: 418 IRPDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQR 477

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           +  ++  +    +       I   +E       +  VE    +      +   IHG  + 
Sbjct: 478 LVRLLNEIAPTKNSANNGNKIIIFVET------KIKVEDILQIIRTEGYTATSIHGDKTQ 531

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +++SV+  F+NG   +LIAT V   G+DV D   +I  +  +     +H++ GR GR +
Sbjct: 532 NERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRI-GRTGRCQ 590

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           ++ +    + P  +K +   +SVL+        A  DL
Sbjct: 591 QLGTAYTFFTPDNAKQARELISVLEEAGQTPSQALLDL 628


>gi|308162755|gb|EFO65133.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           P15]
          Length = 391

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 138/371 (37%), Gaps = 46/371 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q  AI  I+           I Q   G+GKT    I M   ++      QA+I++
Sbjct: 42  TPSAIQSQAIVPIISGKDT------IAQAQSGTGKTAAFTIGMLQRIDLALKSPQAIILS 95

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +       ++ V    G         A +       H+I+ T      
Sbjct: 96  PTRELALQTLKVVDGIGSRLEVQVAQCIGGTQVDDDIAAAQ-----SCHLIVATPGRLLS 150

Query: 389 SIQYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLT 438
            +Q           ++L   DE    G  +++   +        ++L++AT  P  L LT
Sbjct: 151 LLQKKYVTTSNVKMVVLDEADEMLSRGFTEQIVSIMKFMNADIQIVLVSATLPPEILELT 210

Query: 439 SLGDIDISKITEKPA--GRKPIKTVIIPINR--IDEVIERLKVVLSEGKKAYWICPQIEE 494
                D   I  K A      I+  ++ +      EV+E +  VLS  ++    C  I  
Sbjct: 211 RQFMRDPVSILVKEAELTLDGIRQYVVDLQDAWKAEVVEDIYKVLS-VQQGVIFCNSIGR 269

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            K        E    L      +++ IH  +   ++  +M  F++G  ++LIAT +I  G
Sbjct: 270 VK--------ELAEKLKSAGH-TLSCIHSELDQAERNKIMGEFRSGQTRILIATNIIARG 320

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV + S++I  +        LH++ GR GR       I                 ++  
Sbjct: 321 IDVQNVSLVINYDIPREPETYLHRI-GRSGRFGRKGVAINFVT-------EKDKQSMQAI 372

Query: 615 EDGFLIAEEDL 625
            D F +  E+L
Sbjct: 373 TDKFNVTTENL 383


>gi|229079638|ref|ZP_04212172.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2]
 gi|228703680|gb|EEL56132.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2]
          Length = 454

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|77917983|ref|YP_355798.1| putative ATP-dependent RNA helicase [Pelobacter carbinolicus DSM
           2380]
 gi|77544066|gb|ABA87628.1| putative ATP-dependent RNA helicase [Pelobacter carbinolicus DSM
           2380]
          Length = 435

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 129/356 (36%), Gaps = 25/356 (7%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + ++ +I + +       PT  Q  A+ + L           I     G+GKT   ++  
Sbjct: 6   LKLDPRILKALTDCGYHVPTPIQAQAVPEALAGRD------LIASAGTGTGKTAAFMLPA 59

Query: 315 AAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              +       +   + +++AP   LA Q  +  + Y +   +   ++ G +P   + +A
Sbjct: 60  LQRLTVKIARRKGAPRMLVLAPTRELAGQVMDAARVYGKYLGLTTAVLLGGVPYRDQFRA 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L +       +++ T     D +Q   + L  + E        R+           +   
Sbjct: 120 LAKP----LDLVVATPGRLLDHLQRRSIDLSCL-EMLVLDEADRMLDMGFKEDVDKVCAA 174

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           A    +T++ T+  +  + K+  +         + +  N  D + + L V  +   K   
Sbjct: 175 APRQRQTMMFTATLNDAMQKMARRLLDDPFRIDIAVVKNVSDHIEQHLHVADNRQHKNRL 234

Query: 488 ICPQIEEK---KESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGT 541
           +   ++     +   F +     +SL    ++     A +HG M+   +   +   + G 
Sbjct: 235 LQHLLKHSDISQAIVFSATKRDADSLARDLSAQGYRAAALHGDMNQGARNRTVRDLRRGR 294

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            ++L+AT V   G+DV   S +   +   F    +H++ GR GR       I    
Sbjct: 295 IRVLVATDVAARGLDVAGISHVFNYDLPKFAEDYVHRI-GRTGRAGATGVAISFVS 349


>gi|119946809|ref|YP_944489.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119865413|gb|ABM04890.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 581

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/391 (20%), Positives = 137/391 (35%), Gaps = 47/391 (12%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +   K++  + +  P+  Q   I  +L+          +     G+GKT    + + A +
Sbjct: 23  EALTKVVSELGYETPSPIQAQCIPLLLEGKDV------LGLAQTGTGKTAAFALPLLANI 76

Query: 319 E---AGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHG 374
           +      Q + +AP   LA Q  E  + Y ++     V  I G      + K L+R    
Sbjct: 77  DINLNQPQVLALAPTRELAIQVAEAFQTYARHLRGFHVLPIYGGQSYDIQFKQLKR---- 132

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLM 426
              +++GT     D ++   L L  +        DE  R G    ++           +M
Sbjct: 133 GPQVVVGTPGRIMDHLKRKTLDLSNIKTLILDEADEMLRMGFIDDVE----------TIM 182

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
              P  R   L S    D  K   K     P +  I       E IE+   ++    K  
Sbjct: 183 KEMPDKRQTALFSATMPDQIKRITKRYMNSPTEVKIQSKTSTVENIEQKCWIVRGVNKLD 242

Query: 487 WICPQIEEKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +   +E ++            + VE    L      S A+ +G M+   +E  +   K+
Sbjct: 243 ALTRMLETEEYDGVIIFARTKTATVELAERLEARGYRSAAL-NGDMNQQVRERTIARLKS 301

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+DV   S+++  +      + +H++ GR GR       IL   P 
Sbjct: 302 GGLDILVATDVAARGLDVERLSLVVNYDIPTDTESYVHRI-GRTGRAGRKGKAILFAAPR 360

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
             +         +       I   DL  R E
Sbjct: 361 ERRLLKAIERATRQ-----EITIMDLPSRDE 386


>gi|104780746|ref|YP_607244.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95109733|emb|CAK14434.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           entomophila L48]
          Length = 562

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 144/372 (38%), Gaps = 44/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ +I  IL           I Q   G+GKT    + +   ++      QA+I+A
Sbjct: 28  EPSAIQQQSIPIILAGHD------MIGQAQTGTGKTAAFALPILNKIDVSKREPQALILA 81

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y  Q   + V  + G  P   + +A+       A I++ T     
Sbjct: 82  PTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRN----GAQIVVATPGRLC 137

Query: 388 DSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++  +        L+L   DE  + G    L++   A              +T++ ++
Sbjct: 138 DHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPA---------SRQTVLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I  I E+   R+P    I    +    I++  +++   +K   +   +E ++   
Sbjct: 189 TLPSSIRSIAERHL-REPKHVKIQSKTQTVTAIDQAHLMVHADQKIPAVLRLLEVEEFDA 247

Query: 500 FRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             + V          +  E      A ++G ++   +E V+DS K+G   +++AT V   
Sbjct: 248 LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV   + +   +  +   + +H++ GR GR       +LL  P         L V++ 
Sbjct: 308 GLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGREGRALLLVTPRE----RRMLQVIER 362

Query: 614 TEDGFLIAEEDL 625
              G  +AE  L
Sbjct: 363 VT-GQKVAEARL 373


>gi|323499382|ref|ZP_08104358.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323315567|gb|EGA68602.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 477

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/360 (18%), Positives = 139/360 (38%), Gaps = 36/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
            P+  QE AI  +LQ          +     G+GKT    + +   ++ G +       A
Sbjct: 23  KPSPIQEQAIPAVLQGKDV------MAAAQTGTGKTAGFTLPILERLDNGTRVKGNHVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E + KY++  ++  ++I G +    +   L +       +++ T  
Sbjct: 77  LVLTPTRELAAQVQENVFKYSRYQRLTSQVIFGGVKANPQMMKLRK----GCDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     +I++ +L ++++DE  R      ++  +K      +L       + L+ ++
Sbjct: 133 RLLDLYQQNAIKFDQLEVLVLDEADRMLDMGFIRDIRK------ILALLPAKRQNLLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               +I ++  K     P++  +   N     IE+      + KKA  +   I++     
Sbjct: 187 TFSPEIRELA-KGLVNDPVEVSVSKENSTAVTIEQSIYPADKRKKAPMLVKMIKDGDWKQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R          + A IHG  S   +   +  FK+G  K+L+AT +   
Sbjct: 246 TLVFCRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRALADFKSGDVKVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++     +     +H++ GR GR  E+     L     +   +    +++ 
Sbjct: 306 GIDIPQLPQVVNFELPNVSEDYVHRI-GRTGRAGEVGKAYSLVEAAEASELFGIERLIQQ 364


>gi|308071203|ref|YP_003872808.1| ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
 gi|305860482|gb|ADM72270.1| Probable ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
          Length = 559

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 133/364 (36%), Gaps = 22/364 (6%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            ++  +    + VE    + +      SPT  Q+ +I  +++          I +   G+
Sbjct: 7   SEYHLKNFAALGVEQHWVEALKEQGISSPTPVQQESIPLLMEGQDV------IAEAHTGT 60

Query: 305 GKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
           GKTL  L+ +   +   +   QA+++AP   LA Q  E   +       +  +       
Sbjct: 61  GKTLAFLLPILQKLNLDKRHPQALVIAPTRELALQITEEANRLAATEPSLSLLAVYGGQD 120

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             R+    R   G A +IIGT     D ++   L L  + +        ++         
Sbjct: 121 VERQ---LRKLKGGAQLIIGTPGRLLDHLRRGTLDLGGI-KMLVLDEADQMLHMGFLNDV 176

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID--EVIERLKVVL 479
             +L       +T++ ++     I K+       +P+   +   + +   ++ + +    
Sbjct: 177 ETILQEVPYRRQTMLFSATMPAGIRKLARVYMN-EPVDVKVKSASSVPVSQIRQVVVQTT 235

Query: 480 SEGKKAYWICPQIEEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             GK+   +     ++          +    + N   +        +HG +S   +E VM
Sbjct: 236 DRGKQQALVDMLNTDRPYLAVIFCRTKRRAAKLNEELQEMGFESGELHGDLSQNKREQVM 295

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F+    +LL+AT V   G+DV   + +   +      + +H++ GR GR       + 
Sbjct: 296 KAFREAKLQLLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRI-GRTGRAGGKGVAVT 354

Query: 595 LYHP 598
           L  P
Sbjct: 355 LATP 358


>gi|157371044|ref|YP_001479033.1| ATP-dependent RNA helicase DbpA [Serratia proteamaculans 568]
 gi|157322808|gb|ABV41905.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 460

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 82/456 (17%), Positives = 174/456 (38%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           L  + ++  T  Q +A+  IL     +       +   GSGKT    I +   +   +  
Sbjct: 19  LNELGYAEMTPVQAAALPAILNGQDVR------AKAKTGSGKTAAFGIGLLDKINVAQVA 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+ P   LA Q  + +++  + TQ I +  + G  P   +  +L        HI++
Sbjct: 73  AQALILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGPQLDSLVHA----PHIVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L+L  + +        R+     A     ++    P  +TL+ ++ 
Sbjct: 129 GTPGRIQEHLRKKTLVLDEL-KVLVLDEADRMLDMGFADDIDDVISYTPPQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I +I+ +         V +        IE+     +  ++   +   I   +    
Sbjct: 188 YPSGIERISARVQRSP--LNVEVDDGEEQTTIEQRFYETTRDQRPAVLVSAIRHYQPSSC 245

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +      E    ++  +HG +   D++ V+  F N +C++L+AT V   G
Sbjct: 246 VVFCNTKRDCQSVYEALESRGINVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN- 613
           +D+ +  +++           +H++ GR GR       I L  P     ++     L+  
Sbjct: 306 LDIKELELVVNYELAFDPEVHVHRI-GRTGRAGLSGKAISLCTPQEMTRAHAIEDYLQTK 364

Query: 614 ---------TEDGFLIAEEDL-----------KQRKEGEILG--IKQSGMPKFLIAQPEL 651
                    +  G    E ++           K R  G+ILG     +G+    + + ++
Sbjct: 365 VKWAPVSELSGAGNTTLEAEMVTLCIDGGRKAKIR-PGDILGALTGDAGLTAAEVGKIDM 423

Query: 652 H--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
               + + I ++ A+  L Q      ++G++ ++ L
Sbjct: 424 FPVHAYVAIRKESARKALQQL-QQGKIKGKNCKVRL 458


>gi|92117844|ref|YP_577573.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14]
 gi|91800738|gb|ABE63113.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14]
          Length = 487

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 133/374 (35%), Gaps = 43/374 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q+ AI  +L           +     G+GKT   ++ M   +E G       + +
Sbjct: 23  APTPIQDQAIPHVLA------HRDVLGIAQTGTGKTAAFVLPMLTLLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E   KY    ++ V ++ G +    +   L R       ++I T   
Sbjct: 77  ILEPTRELAAQVKESFDKYGVGQKLNVALLIGGVSFGDQDMKLTR----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D  +   L+L  V     DE  R      +   ++       +    P  R  +  + 
Sbjct: 133 LLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIER-------ICKLVPFTRQTLFFTA 185

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKE- 497
              +  +         P K  +         + + +V       +K   +   + + K+ 
Sbjct: 186 TMPNEIRRVTDAFLHNPEKIEVSRPATAAATVAQSQVSCGREAHEKRELLRRLLRDAKDL 245

Query: 498 ------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N +  V       +    S+  +HG M    + + +D F+ G   LL+A+ V 
Sbjct: 246 KNAIIFCNRKRDVAIVYKSLQKHGFSVGALHGDMDQSARTASLDQFRKGELPLLVASDVA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ + S ++  +  H     +H++ GR GR     + I +         +  ++ +
Sbjct: 306 ARGLDIPEVSHVLNFDVPHHPDDYVHRI-GRTGRAGRTGTAITIVCSAD----FKSVAAI 360

Query: 612 KNTEDGFLIAEEDL 625
           +    G  I + DL
Sbjct: 361 EKLT-GQAIPKADL 373


>gi|313201469|ref|YP_004040127.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
           MP688]
 gi|312440785|gb|ADQ84891.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
          Length = 468

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 128/361 (35%), Gaps = 45/361 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +PT  Q  AI ++L           +     G+GKT    +     +         G + 
Sbjct: 25  TPTPIQAQAIPEVLAGHD------LMASAQTGTGKTAAFTLPALNLLADIHPSKSRGPRI 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  +  +KY +  +     I G MP   + K L +       I++ T  
Sbjct: 79  LVLTPTRELAAQVNDAARKYGKFMRARTVSIVGGMPYPLQNKLLSQP----LDILVATPG 134

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKA--TAPHVLLMTAT---PI 431
              D ++  +        LIL   D     G    ++   +A       L+ +AT   PI
Sbjct: 135 RLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERINEALPRERQTLMFSATFEGPI 194

Query: 432 PRTLVLTSLGDIDISKIT---EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
              +  T L D  + +I    EK A  +     +  +N  ++++E L +   +  +A   
Sbjct: 195 A-NIAKTLLKDPKVIQIAAQKEKHANIEQRLHFVDDMNHKNKLLEHLLIA-PDVNQAIVF 252

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    ++ +   +             A +HG M+   +   +   ++G  ++L+AT
Sbjct: 253 ---------TSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVRVLVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV   + +I  +   F    +H++ GR GR       +               
Sbjct: 304 DVAARGIDVQGITHVINYDLPKFAEDYVHRI-GRTGRAGNTGVAVSFASHADRHQLRKIE 362

Query: 609 S 609
            
Sbjct: 363 Q 363


>gi|281345231|gb|EFB20815.1| hypothetical protein PANDA_010757 [Ailuropoda melanoleuca]
          Length = 404

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 131/343 (38%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 58  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 111

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 112 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 167

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 168 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 227

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 228 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 280

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 281 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 340

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S+II  +  +     +H++ GR GR       I      
Sbjct: 341 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKND 382


>gi|258645792|ref|ZP_05733261.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
           DSM 15470]
 gi|260403163|gb|EEW96710.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
           DSM 15470]
          Length = 510

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 135/355 (38%), Gaps = 39/355 (10%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
               K + ++ F  PT  Q+ +I   ++          I Q   G+GKT    I +   +
Sbjct: 12  PEIMKAIEDMGFEEPTPIQKVSIPAAMEGKD------LIGQAQTGTGKTAAFGIPILEKI 65

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
              E G QA++++P   LA Q  E + +  Q   I    I G      + +AL +    +
Sbjct: 66  DTTEKGPQAIVLSPTRELAIQSAEEMNRLAQYLPIHALPIYGGQDIERQFRALRK----K 121

Query: 376 AHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMT 427
            +II+ T     D ++   + L  V        DE    G    +           +L  
Sbjct: 122 PNIIVATPGRLMDHMKRGTIDLSHVQILVLDEGDEMVDMGFIDDI---------RTILAG 172

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                +T+  ++     I ++ E    R P+   I       +++E+  + L + +K   
Sbjct: 173 MPEERQTMFFSATMPAPIRELAESFL-RDPVLVKIKAATVTIDLVEQEYIELPDMQKFDC 231

Query: 488 ICPQIEEKK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGT 541
           +C  ++ +       F     R + + E           +HG +S   +++V+  FK GT
Sbjct: 232 LCRLLDMENPELAIVFVRTKRRADEVTEALKKRGYMAEGLHGDLSQQKRDAVVRQFKEGT 291

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             +L+AT V   G+D+   + +   +        +H++ GR GR  +    +   
Sbjct: 292 IDILVATDVAARGLDISGVTHVYNFDMPQDSETYVHRV-GRTGRAGQTGLAMTFV 345


>gi|73964736|ref|XP_533130.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48
           isoform 1 [Canis familiaris]
          Length = 411

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 60  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 114 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 170 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 230 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 282

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 283 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 342

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 343 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 401

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 402 EMPMNVADL 410


>gi|39104462|dbj|BAD04052.1| vasa homologue [Leucopsarion petersii]
          Length = 645

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 131/366 (35%), Gaps = 37/366 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  +  I            +     GSGKT   L+ +   + A G         
Sbjct: 232 KPTPVQKHGVPIISAGRD------LMACAQTGSGKTAAFLLPILQHLMADGVAASQFSEL 285

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q +   +K+   T +   ++ G +   H+ + L R  +    I+
Sbjct: 286 QEPEALIVAPTRELINQIHLEARKFAYGTCVRPVVVYGGVSTGHQIRDLCRGCN----IL 341

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L      ++DE  R                    M      +T
Sbjct: 342 CGTPGRLLDVINRGKVGLTKLRYFVLDEADRMLDMGFEP--DMRRLVGSPGMPTKEDRQT 399

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI K+         +   +  +      + +  V +++  K   +   ++ 
Sbjct: 400 LMFSATYPEDIQKLAADFLKTDYLFLAVGIVGGACTDVNQEFVEVTKFDKREKLLELLKT 459

Query: 495 KKESNFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    VE         +           IHG     ++E  +  F++G C +L+AT
Sbjct: 460 TGTDRTMVFVETKRLADFIAAFLCQEKVPTTSIHGGREQREREQALGDFRSGKCPVLVAT 519

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTR 607
           +V   G+D+ D   ++  +  +     +H++ GR GR   +   +  + P   S+ +   
Sbjct: 520 SVAARGLDIPDVQNVVNFDLPNNIDEYVHRI-GRTGRCGNLGRAVSFFDPDNDSQLARPL 578

Query: 608 LSVLKN 613
           +S+L  
Sbjct: 579 ISILSK 584


>gi|326426645|gb|EGD72215.1| DEAD box ATP-dependent RNA helicase [Salpingoeca sp. ATCC 50818]
          Length = 1054

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 89/456 (19%), Positives = 164/456 (35%), Gaps = 74/456 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  A+  I+        ML I     GSGKTL  L+ M   V          G  
Sbjct: 336 DPTPIQAQALPVIM----SGRDMLGI--AKTGSGKTLAFLLPMLRHVLDQRRVRQGEGCI 389

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I++P   LA Q Y   KK+T++  + +  + G    A +   L+R       II+ T 
Sbjct: 390 ALILSPTRELAVQTYTEAKKFTKHLDLRIACVYGGSDIADQIAHLKRS----VEIIVCTP 445

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +           ++  V++DE  R                  +L    P  +T+
Sbjct: 446 GRMIDMLTVNRGKVTNPRRITYVVLDEADRMFDMGFEPQVM------RILDNIRPDRQTV 499

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     +  +  K   +KPI+  +   + + + +E+  +VL E  K   +   +   
Sbjct: 500 MFSATFPRAMEVLARK-ILKKPIEIQVGGRSIVSDTVEQHVLVLEEQNKFNKLLELLGIY 558

Query: 496 KESN----FRSVVERFNSLHEHFTSSIAI---IHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                   F    E+ + L  +      +   +HG +S  D++S +  FK G  K+LIAT
Sbjct: 559 YVQGSVIVFVHRQEKADMLLTNLMGHGYMSLPLHGAVSQEDRQSNIRDFKLGNVKILIAT 618

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
           +V   G+DV    +++  +  +     +H+  GR GR     +          + +   +
Sbjct: 619 SVAARGLDVKSLKLVVNYDCPNHYEDYVHR-CGRTGRAGNKGTAFTFVTKDDKQLAGHVI 677

Query: 609 SVLKNTED---------------------------------GFLIAEEDLKQRKEGEILG 635
             L+ +                                   G+  + E+L +RK+ ++L 
Sbjct: 678 KALELSSQEVPADLKAVWEEYKKEMKAKGKRIGAGSGFRGRGYKFSAEELIRRKQMKLLA 737

Query: 636 IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
           +K            E    L E        ++ + P
Sbjct: 738 LKAHSEGNLDADYKEREQELAEEIESQVDILMGKKP 773


>gi|322804966|emb|CBZ02525.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum H04402 065]
          Length = 425

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 135/358 (37%), Gaps = 38/358 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------QA 324
           T  QE +I  IL           +     G+GKT    + +   +             +A
Sbjct: 25  TPIQEKSIPYILDGKD------LVGCAQTGTGKTAAFAVPVLQNLSKDKKANKNPRSIRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  E  + Y +   +   +I G + Q  + K L         I+I T  
Sbjct: 79  LVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKVLRE----GVDILIATPG 134

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I    +   ++DE  R      +   +K      ++     I + L+ ++
Sbjct: 135 RMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKK------IISKLPKIRQNLLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
               +I+K+ +    + PI+  + P++   + I +    + + +K   +   +++K    
Sbjct: 189 TMPSEITKLVDS-IVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLLKDKSIES 247

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +     N + +    +      IHG  S   ++  +++FK G  ++L+AT +   
Sbjct: 248 ALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVATDIAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           GIDV + S +   N        +H++ GR GR       I       +K+      ++
Sbjct: 308 GIDVNELSHVFNYNLPDVPETYVHRI-GRTGRAGAKGVAISFCDIEETKSLKAIEKLI 364


>gi|307720439|ref|YP_003891579.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978532|gb|ADN08567.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 518

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 141/372 (37%), Gaps = 40/372 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA--VIMAPI 330
           P+  Q  AI  IL+          + Q   G+GKT    + + + ++  G    +++ P 
Sbjct: 42  PSPIQAQAIPIILEGRD------MVGQAHTGTGKTAAFSLPVLSNMKLDGSVEMLVITPT 95

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  + I KY +N  +    + G      +   + R     A +++ T     D +
Sbjct: 96  RELATQVSDEIFKYGRNLGVKTVTVYGGSSYKRQLDLIGR----GASVVVATPGRMLDLL 151

Query: 391 QYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +   L        +L   DE    G         +   T    LL +AT     + L   
Sbjct: 152 KRNMLNNFAPSVVVLDEADEMLDMGFLDDINEIFSYLPTNRQTLLFSATMPQPIKNLANR 211

Query: 439 SLGDIDISKITEKPAGRKPIKT---VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            L D     IT+       I+    VI    R D +I  +    ++  KA   C      
Sbjct: 212 ILKDPAFVSITKGETTNTDIEQEYYVIDEHERDDAIIRLMDAEDTK--KAVVFCRT---- 265

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +S V+R +++  +       +HG M    +E+V+  FKN + K+L+AT V   GI
Sbjct: 266 -----KSEVDRLSNVLSNAGYLANGLHGDMEQRQRETVIKGFKNDSVKVLVATDVAARGI 320

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-PLSKNSYTRLSVLKNT 614
            V + S +   +      + +H++ GR GR       I L  P    +    +  V  + 
Sbjct: 321 HVNNISHVFNYHIPFDPESYVHRI-GRTGRAGTKGKAITLLTPLEFKELQRIKQKVGTSM 379

Query: 615 EDGFLIAEEDLK 626
              F+ ++ DLK
Sbjct: 380 NHAFVPSKNDLK 391


>gi|167525138|ref|XP_001746904.1| p68DDX5 RNA helicase [Monosiga brevicollis MX1]
 gi|163774684|gb|EDQ88311.1| p68DDX5 RNA helicase [Monosiga brevicollis MX1]
          Length = 487

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 143/380 (37%), Gaps = 46/380 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       L           +   D GSGKTL  ++     +          G  
Sbjct: 83  TPTPIQAQGWPMALAGR------NMVGVADTGSGKTLSFILPAIVHINNQPLLRPGDGPI 136

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  E   KY  +++I    + G  P+  +   LER       ++IGT 
Sbjct: 137 ALVLAPTRELAQQIAEVAHKYGSSSRIKTTCVFGGAPKRGQAMDLER----GVELLIGTP 192

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +   K        L+L   D     G + +L+           +    P  +TL
Sbjct: 193 GRLIDFLDTRKTNLRRCTYLVLDEADRMLDMGFEPQLRKI---------VSQIRPDRQTL 243

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + ++    ++ ++  +  G+  I+  I  I    +  I++  +++ +  K   +   ++E
Sbjct: 244 MWSATWPKEVQQLAYEFLGQDVIRVQIGAIGLSANHRIKQHVMIMQDYDKQRELFRLLDE 303

Query: 495 KKES---------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
                          +  V+               +HG     ++++V+  F++G   +L
Sbjct: 304 IMRQKENKTIIFAETKRNVDDLTRNLRREGFPAMCMHGDKQQRERDTVLAEFRDGRHPIL 363

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           IAT V   G+DV D   +I  +  +     +H++ GR  RG    +    +    ++ + 
Sbjct: 364 IATDVASRGLDVKDIKYVINFDYPNNSEDYVHRI-GRTARGGGEGTAYTFFSSKNARQAK 422

Query: 606 TRLSVLKNTEDGFLIAEEDL 625
             +SVL+  +        D+
Sbjct: 423 DLVSVLEEAKQEIPRELRDM 442


>gi|114794619|pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794620|pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794621|pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794622|pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
          Length = 391

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 38  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 91

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 92  PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 147

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 148 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 207

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 208 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 260

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 261 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 320

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 321 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 379

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 380 EMPMNVADL 388


>gi|299532061|ref|ZP_07045456.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
 gi|298719976|gb|EFI60938.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
          Length = 464

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 128/359 (35%), Gaps = 30/359 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
           S T  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 16  SMTPIQAQAIPVVLTGKDV------MGAAQTGTGKTAAFSLPLLQRLMRHENASASPARH 69

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   LA Q  + I  Y ++T++   ++ G M    +   L++       +++
Sbjct: 70  PVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQTIELKK----GVEVLV 125

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D I+   ++L  V E        R+           +L        TL+ ++ 
Sbjct: 126 ATPGRLLDHIEAKNVVLNQV-EYVVLDEADRMLDIGFLPDLQRILSYLPKSRTTLLFSAT 184

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
              +I ++      + P+   +   N     +E+    +++  K Y I   ++E+     
Sbjct: 185 FSPEIKRLAGSYL-QDPVTIEVARPNETASTVEQRFYKVTDDDKRYAIRSVLKERDIRQA 243

Query: 499 ----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +    R     E      A +HG  S  ++   +++FK G   LL+ T V   G
Sbjct: 244 FIFSNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDVAARG 303

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           +D+ D   +   +        +H++ GR GR       + L     S+N      + K 
Sbjct: 304 LDIKDVPAVFNYDVPFNAEDYVHRI-GRTGRAGASGLAVTLVTDHDSRNVADIEKLTKK 361


>gi|328849915|gb|EGF99087.1| hypothetical protein MELLADRAFT_50777 [Melampsora larici-populina
           98AG31]
          Length = 395

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/367 (20%), Positives = 133/367 (36%), Gaps = 39/367 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ AI  I +          I Q   G+GKT    I++  +++      QA++++
Sbjct: 44  KPSAIQQRAILPITKGRDV------IAQAQSGTGKTATFSISILQSIDTQIRETQALVLS 97

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        I      G        + L+       H++ GT     D
Sbjct: 98  PTRELATQIQSVILALGDYMNIQCHACIGGTSIGEDIRKLDHGQ----HVVSGTPGRVYD 153

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G + ++    +            P  + +VL++ 
Sbjct: 154 MIRRRNLRTRNIKMLVLDEADELLNLGFKDQIYDVYRYLP---------PQTQVVVLSAT 204

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+ ++T K     PI+ ++       E I++  V +  E  K   +C   +      
Sbjct: 205 LPYDVLEMTTKFMT-DPIRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQ 263

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++++M  F+NGT ++LI T V   
Sbjct: 264 AVIFCNTRRKVDWLTEKMREANFTVSSMHGDMPQKERDTIMGEFRNGTSRVLITTDVWAR 323

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GIDV   S++I  +        +H++ GR GR       I        +           
Sbjct: 324 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTNEDVRILRDIEQYYST 382

Query: 614 TEDGFLI 620
             D   +
Sbjct: 383 QIDEMPV 389


>gi|154490238|ref|ZP_02030499.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
           43184]
 gi|154089130|gb|EDN88174.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
           43184]
          Length = 427

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 137/383 (35%), Gaps = 55/383 (14%)

Query: 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           +G  A   L       T  QE  I  IL+          I     G+GKT   ++ +   
Sbjct: 14  DGLDAMNFLET-----TPVQELTIPVILEGKD------IIACAQTGTGKTAAYVLPVINE 62

Query: 318 VEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +  G        A+IMAP   LAQQ  + I+ +T    +    + G        +    +
Sbjct: 63  LSKGLHPANAINAIIMAPTRELAQQIDQQIEGFTYFVPVSAVAVYGGTDGIAWEQQKRGM 122

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQK--ATAP 421
             G A I+I T       I+   + L  V        D     G    +    K      
Sbjct: 123 EMG-ADIVIATPGRLLSHIKLGTVDLSQVSFFVLDEADRMLDMGFYDDIMQVYKLLPATC 181

Query: 422 HVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
             ++ +AT  P  RTL  T L + +  KI                I+R  E I +   V 
Sbjct: 182 QTIMFSATMPPKIRTLAQTILKNPEEVKIA---------------ISRPPETIMQTAYVC 226

Query: 480 SEGKKAYWICPQIEEKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            + +K   +     + +          +  V+   S  +    ++A +H  +    +E V
Sbjct: 227 YDMQKLRILEDLFSKSRPQRVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEV 286

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M  FKNG   +L+AT V+  GID+ D  ++I  +  H     +H++ GR  RG       
Sbjct: 287 MKEFKNGRIDILVATDVVSRGIDINDIKLVINFDIPHDPEDYVHRI-GRTARGTNGEGLA 345

Query: 594 LLYHPPLSKNSYTRLSVLKNTED 616
           + +   +S     +   ++   D
Sbjct: 346 ITF---ISTEEQFQFKRIEEFLD 365


>gi|83647394|ref|YP_435829.1| ATP-dependent RNA helicase DbpA [Hahella chejuensis KCTC 2396]
 gi|83635437|gb|ABC31404.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 493

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 89/456 (19%), Positives = 172/456 (37%), Gaps = 55/456 (12%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + S T  Q  ++  IL           I QG  GSGKT    + +   ++     
Sbjct: 50  LSTLGYHSMTPIQAQSLPSILAGKDV------IAQGKTGSGKTAAFGLGLLNKLDIKRFC 103

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    I V  + G MP   +  +LE      AHI++
Sbjct: 104 VQALVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEH----GAHIVV 159

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    ++ ++   L+L  +          R+       A   ++       +TL+ ++ 
Sbjct: 160 GTPGRVEEHLRKGTLVLDQL-HTLVLDEADRMLEMGFQAALDAIVEKMPAQRQTLLFSAT 218

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
               I  I E+     P+   +   +    + +    V  +  +   +   + + K    
Sbjct: 219 YPNQIQSIAER-VMLNPVMVKVESSHDNASIQQYYYKVEGDTHRLEVLRLLLLQYKPEST 277

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               +  R   E  + L  H  S++A+ HG +   D++  +  F N +  +L+AT V   
Sbjct: 278 VVFCNTKRETQEVADMLVSHGFSAVAL-HGDLEQRDRDQTLVCFANKSASILVATDVAAR 336

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-------------- 599
           G+D+     +I  +        +H++ GR GR         L+                 
Sbjct: 337 GLDIDALDAVINFHIARDPEVHVHRI-GRTGRAGASGVACTLFSESEMYKIGRLEEYQEI 395

Query: 600 -LSKNSYTRLSVLKNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLIAQP 649
            +S       S+LKN    +    E L+           G+ILG     +G+   L+ + 
Sbjct: 396 IVSAEPAPATSLLKNLA--YKPPMETLQIDGGKKQKVRPGDILGALTGDNGVDGKLVGKI 453

Query: 650 ELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            + D  + + +AR   K  + +      ++G+S R+
Sbjct: 454 HIFDNCAYVAVARSAVKLAMDKL-GKGKMKGRSFRV 488


>gi|312864570|ref|ZP_07724801.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei
           F0415]
 gi|311099697|gb|EFQ57910.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei
           F0415]
          Length = 521

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 34/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--AVEAGG-QAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +      A++    QA+++A
Sbjct: 23  EPSPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIAIDNNVIQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ +   + V  + G      + KAL       AHI++GT     D
Sbjct: 77  PTRELAVQSQEELFRFGREKGVKVRSVYGGSSIDKQIKALRS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLV 436
            I+   L L  V        DE    G        ++        LL +AT     + + 
Sbjct: 133 LIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISHVPDERQTLLFSATMPDAIKRIG 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +  + + +  KI  K      ++   I +   ++     +++  E  +   +  +     
Sbjct: 193 VKFMKEPEHVKIAAKELTSDNVEQFYIRVKEREKFDTMTRLIDIEQPELSIVFGRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D
Sbjct: 249 ----KRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILVATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 305 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGKSVTFVSPN 346


>gi|256832539|ref|YP_003161266.1| DEAD/DEAH box helicase domain-containing protein [Jonesia
           denitrificans DSM 20603]
 gi|256686070|gb|ACV08963.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
           20603]
          Length = 657

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 141/372 (37%), Gaps = 40/372 (10%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
              Q+ + ++ F+ P+K Q+ AI  + +       +  I Q   G+GKT    I + A++
Sbjct: 58  NQIQRAVDDLGFTVPSKIQQQAIPVLFEG----RDITGIAQ--TGTGKTAAFGIPLLASI 111

Query: 319 EAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHG 374
           +      QA+++AP   LA Q  E I+ + ++   +    + G  P   + +AL+     
Sbjct: 112 DTSVRQVQALVLAPTRELAIQVSEAIESFARHMPGLETLAVYGGSPYPPQIRALKT---- 167

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLM 426
             H+++GT     D I+   L L  V        DE  R G    ++           + 
Sbjct: 168 GVHVVVGTPGRVIDHIERGTLDLSQVRFLVLDEADEMLRMGFADDVEK----------VF 217

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           + TP  R + L S       +   +     P++  +   +     I++   V+    K  
Sbjct: 218 SETPADRQVALFSATMPPAIRRVAQRHLTNPVEIAVARQSTTVTAIDQEYAVVPFRHKTG 277

Query: 487 WICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +   +              R   E   +       S A I G +   D+E +++  +NG
Sbjct: 278 SLYRVLATSDVEAAIVFCRTRGAAEEVGAALIERGVSAATISGDVPQKDREKIVERLRNG 337

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+DV    +++  +      A +H++ GR GR       +    P  
Sbjct: 338 QLDVLVATDVAARGLDVDRIGLVVNFDIPGEPEAYVHRI-GRTGRAGRQGRALSFITPAE 396

Query: 601 SKNSYTRLSVLK 612
                +    ++
Sbjct: 397 RGKLRSIERTIR 408


>gi|153939895|ref|YP_001390000.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
           Langeland]
 gi|152935791|gb|ABS41289.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
           Langeland]
 gi|295318086|gb|ADF98463.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
           230613]
          Length = 425

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 135/358 (37%), Gaps = 38/358 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------QA 324
           T  QE +I  IL           +     G+GKT    + +   +             +A
Sbjct: 25  TPIQERSIPYILDGKD------LVGCAQTGTGKTAAFAVPVLQNLSKDKKANKNPRPIRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  E  + Y +   +   +I G + Q  + K L         I+I T  
Sbjct: 79  LVLAPTRELAIQIAESFECYGKYINLKSAVIFGGVSQNPQTKVLRE----GVDILIATPG 134

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I    +   ++DE  R      +   +K      ++     + + L+ ++
Sbjct: 135 RMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKK------IISKLPKVRQNLLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
               +I+K+ +    + PI+  + P++   + I +    + + +K   +   +++K    
Sbjct: 189 TMPSEITKLVDS-IVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLLKDKSIES 247

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +     N + +    +      IHG  S   ++  +++FK G  ++L+AT +   
Sbjct: 248 ALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVATDIAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           GIDV + S +   N        +H++ GR GR       I       +K+      ++
Sbjct: 308 GIDVNELSHVFNYNLPDVPETYVHRI-GRTGRAGAKGVAISFCDIEETKSLKAIEKLI 364


>gi|71906757|ref|YP_284344.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Dechloromonas aromatica RCB]
 gi|71846378|gb|AAZ45874.1| ATP-dependent RNA helicase CsdA [Dechloromonas aromatica RCB]
          Length = 606

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/359 (21%), Positives = 141/359 (39%), Gaps = 36/359 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q   I  +L+          I     G+GKT    + +   ++      QA+I+ 
Sbjct: 28  TPSPIQAQCIPVLLEGHD------LIGMAQTGTGKTAAFALPLMEQIDVKLTKPQALILT 81

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E ++ Y +N     V  I G      + K L R     AH+I+GT     
Sbjct: 82  PTRELAIQVAEALQTYAKNLPGFHVLPIYGGQSYTIQLKQLSR----GAHVIVGTPGRVM 137

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKAT--APHVLLMTATPIPRT--L 435
           D ++   L L  +        DE  R G    ++   + T       L +AT   +   +
Sbjct: 138 DHLERKTLNLDHLKTMVLDEADEMLRMGFIDDVEWILERTPAQHQTALFSATMPEQIRRV 197

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAYWICPQIEE 494
               L +    KI    A    I+ V   ++ + ++    ++  + E   A  I  + + 
Sbjct: 198 AQKYLVEPREIKIKSATATVAAIRQVYWQVSGMHKLDALTRILEVEEDFDAAIIFVRTKT 257

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                  + VE  + L     ++ A+ +G ++   +E V++  K+G   ++IAT V   G
Sbjct: 258 -------ATVELADKLSARGYAAAAL-NGDLNQQMRERVIEQLKSGALDIVIATDVAARG 309

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           IDV   S ++  +  +   A +H++ GR GR     + IL   P   +   T     ++
Sbjct: 310 IDVPRVSHVVNYDIPYDTEAYVHRI-GRTGRAGRTGNAILFVAPREIRMLRTIERATRS 367


>gi|37362659|ref|NP_011932.2| Rrp3p [Saccharomyces cerevisiae S288c]
 gi|81175193|sp|P38712|RRP3_YEAST RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
           Full=Ribosomal RNA-processing protein 3
 gi|285809971|tpg|DAA06758.1| TPA: Rrp3p [Saccharomyces cerevisiae S288c]
          Length = 501

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 132/348 (37%), Gaps = 33/348 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
            +N+ +S PT  Q  AI   L+          I     GSGKT    I +   +   +  
Sbjct: 96  CKNLNYSKPTPIQSKAIPPALEGHD------IIGLAQTGSGKTAAFAIPILNRLWHDQEP 149

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A I+AP   LAQQ  E          +    I G M    + + L R    + HIII 
Sbjct: 150 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR----KPHIIIA 205

Query: 382 THALFQDSIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           T     D ++        KL  +++DE  R      L +        +L +  T    T 
Sbjct: 206 TPGRLMDHLENTKGFSLRKLKFLVMDEADRL-----LDMEFGPVLDRILKIIPTQERTTY 260

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I K+ ++ +   P+K  +    +  + + +  +V+  G K  ++   + E 
Sbjct: 261 LFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEF 319

Query: 496 KESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      ++  ER + L      S   +HG ++   +   +D FK G   +L+AT 
Sbjct: 320 IGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATD 379

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   G+D+    I++  +      + +H++ GR  R       I L  
Sbjct: 380 VAARGLDIPSVDIVVNYDIPVDSKSYIHRV-GRTARAGRSGKSISLVS 426


>gi|260577582|ref|ZP_05845521.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
 gi|258604306|gb|EEW17544.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
          Length = 707

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 144/385 (37%), Gaps = 42/385 (10%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
           + + F  P+  Q   I  +++          +     G+GKT    + + + ++      
Sbjct: 90  KKVGFEVPSPIQAETIPVLMEGHDV------VGLAQTGTGKTAAFALPILSRIDVSKRHP 143

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+++AP   LA Q  E  + ++++   I V  I G      +   L R     AHI++G
Sbjct: 144 QALVLAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLRR----GAHIVVG 199

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D ++   L        +L   DE    G Q+ ++   +           TP  +
Sbjct: 200 TPGRVIDHLEKGSLDISELRFMVLDEADEMLNMGFQEDVERILED----------TPSDK 249

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + L S       +   K     P +  +    R  E IE+  +++S   K   +   +E
Sbjct: 250 QVALFSATMPSGIRRLSKQYLSDPREITVKATQRTSENIEQDYLLVSHRDKLDALTRILE 309

Query: 494 --EKKESNF----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             E +        ++  E           + A I+G +    +E  +D  K+G   +L+A
Sbjct: 310 ITEFEAMIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVA 369

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV   + +   +  H   + +H++ GR GR       IL   P   +   + 
Sbjct: 370 TDVAARGLDVDRITHVFNYDIPHDTESYVHRI-GRTGRAGRKGRAILFVTPRERRLLKSI 428

Query: 608 LSVLKNTEDGFLIAEED--LKQRKE 630
               K+  +   +   D   + RKE
Sbjct: 429 ERATKSRLNEIELPTVDAVNEARKE 453


>gi|195343855|ref|XP_002038506.1| GM10578 [Drosophila sechellia]
 gi|194133527|gb|EDW55043.1| GM10578 [Drosophila sechellia]
          Length = 724

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 134/378 (35%), Gaps = 41/378 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       +           +     GSGKTL  ++     +          G  
Sbjct: 307 APTAIQAQGWPIAMSG------SNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPI 360

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  ++ +    + G  P+  + + L+R       I+I T 
Sbjct: 361 ALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE----IVIATP 416

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     S    +   +++DE  R          +K  +         P  +TL+ +
Sbjct: 417 GRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR------PDRQTLMWS 470

Query: 439 SLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    ++ ++ E   G      +    +   + I +V++       E K    +    + 
Sbjct: 471 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDT 530

Query: 495 KKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           +  V+        F      IHG  S  +++ V+  F++G   +L+A
Sbjct: 531 SESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 590

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV     +I  +        +H++ GR GR     +    +    +K +   
Sbjct: 591 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRI-GRTGRSNTKGTSFAFFTKNNAKQAKAL 649

Query: 608 LSVLKNTEDGFLIAEEDL 625
           + VL+        A E+L
Sbjct: 650 VDVLREANQEINPALENL 667


>gi|229159014|ref|ZP_04287070.1| ATP-dependent RNA helicase dbpA [Bacillus cereus ATCC 4342]
 gi|228624433|gb|EEK81204.1| ATP-dependent RNA helicase dbpA [Bacillus cereus ATCC 4342]
          Length = 481

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 142/378 (37%), Gaps = 40/378 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  ++ L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   
Sbjct: 12  SKEVRRALTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+++ P   LA Q  E I    +  +I    I G  P A ++  L++    
Sbjct: 66  VEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ---- 121

Query: 375 QAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
           + HI++GT     D I+           L++   DE    G   ++   + +  T    +
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT       L+       + I  K AG     I+  +  +   +++     V   E 
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIEN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I  + +E  +  +R                   IHG M   D+  VMD F+ G  
Sbjct: 242 PDSCIIFCRTQENVDHVYRQ--------LNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKF 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + L+AT V   GID+ + + +I  +      + +H+  GR GR       I    P   +
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYEER 352

Query: 603 NSYTRLSVLKNTEDGFLI 620
                 + +     GF I
Sbjct: 353 FLEEIEAYI-----GFAI 365


>gi|5270|emb|CAA36873.1| p68 protein [Schizosaccharomyces pombe]
          Length = 550

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 135/372 (36%), Gaps = 44/372 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
           + + F  PT  Q+ A    +        M+ I     GSGKTL   +     + A     
Sbjct: 138 KQLGFEAPTPIQQQAWPMAM----SGRDMVGI--SATGSGKTLSYCLPAIVHINAQPLLS 191

Query: 321 ---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
              G   +++AP   LA Q  +   K+ ++++I    + G +P   +   L R       
Sbjct: 192 PGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPLGPQILDLIR----GVE 247

Query: 378 IIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMT 427
           I I T     D +   K        L+L   D     G + +++    Q       ++ +
Sbjct: 248 ICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFS 307

Query: 428 ATPIPRTLVLTSLGDIDISKIT------EKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           AT       L      D  ++T            K I  V+   ++   + + ++ VL +
Sbjct: 308 ATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKD 367

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 I            R   +    L +    ++AI HG  +  +++ V++ F+ G 
Sbjct: 368 RDNKVLIFT-------GTKRVADDITRFLRQDGWPALAI-HGDKAQDERDWVLNEFRTGK 419

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +++AT V   GIDV   + +   +        +H++ GR GR     +    +    +
Sbjct: 420 SPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRI-GRTGRAGAKGTAYTYFTSDNA 478

Query: 602 KNSYTRLSVLKN 613
           K +   +S+L  
Sbjct: 479 KQARELVSILSE 490


>gi|17545341|ref|NP_518743.1| ATP-dependent RNA helicase DbpA [Ralstonia solanacearum GMI1000]
 gi|17427633|emb|CAD14152.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 465

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/460 (17%), Positives = 169/460 (36%), Gaps = 60/460 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I Q   GSGKT    +A+ A ++     
Sbjct: 23  LAQLGYTDMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDTRRFD 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    + V  + G  P   +  +LE      AH+++
Sbjct: 77  VQAMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEH----GAHVVV 132

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D ++   L L      ++DE  R                  ++    P  +TL
Sbjct: 133 GTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIA------TVVRQCPPERQTL 186

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++ +       K V +     D  I +    +++ ++ + +   ++  
Sbjct: 187 LFSATYPDGIAKLSRQILRNP--KEVKLEERHDDSKIRQRFYEVTDDERLHAVGLLLKHY 244

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 245 RPVSTLAFCNTKQQCRNLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 305 VAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQDGWALSLASMDEMGRVGGIEQ 363

Query: 610 VLKNTEDGFLIAEED-------------LKQRK-------EGEILG--IKQSGMPKFLIA 647
            L    +   +AE D             L+           G++LG     +G     I 
Sbjct: 364 ALGREVEWHRLAELDASSDAPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFRGDQIG 423

Query: 648 QP--ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +       + + + R  A+  L +  +   V+G+ +R+ L
Sbjct: 424 KINATEFSTYVAVERGIARDALRKL-NAGKVKGKKVRVRL 462


>gi|326482407|gb|EGE06417.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
           equinum CBS 127.97]
          Length = 1182

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 138/379 (36%), Gaps = 47/379 (12%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----- 318
           ++R + +  PT  Q  A+  I+           I     GSGKT+  L+ M   +     
Sbjct: 562 VIRKLGYEGPTSIQSQAVPAIMSGRDV------IGVAKTGSGKTIAFLLPMFRHIRDQRP 615

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  ++IM P   LA Q +   + + +   +      G  P   +   L+R     
Sbjct: 616 LENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKR----G 671

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K          
Sbjct: 672 AEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIR---- 727

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K    KPI+ ++   + +   I ++  V ++  K   
Sbjct: 728 --PNRQTVLFSATFPRNMEALARKTL-SKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVR 784

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  + L             IHG    ID++S +D
Sbjct: 785 LLELLGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTID 844

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    +++  +A +     +H+  GR GR     + +  
Sbjct: 845 DFKAGIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 903

Query: 596 YHPPLSKNSYTRLSVLKNT 614
                 + S      LK +
Sbjct: 904 LTEDQERYSVDISKALKQS 922


>gi|260426960|ref|ZP_05780939.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
 gi|260421452|gb|EEX14703.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
          Length = 473

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 134/369 (36%), Gaps = 46/369 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L           +     G+GKT    + M  A+  G       +++
Sbjct: 24  TPTPIQAGAIPHALAGKDV------LGIAQTGTGKTASFTLPMITALARGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y +  ++   ++ G +    + + +++       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQEQLIDK----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KLIL     ++VDE  R      +   ++       + + TP   +TL  ++
Sbjct: 134 LLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIER-------IFSLTPFTRQTLFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER----------LKVVLSEGKKAYWIC 489
               +I +IT       P +  +       E IE+           +    +      I 
Sbjct: 187 TMAPEIERITNTFL-SNPERVEVARQATASETIEQGAVFFKGSRRDREATEKRDVLRQII 245

Query: 490 PQIEEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +  EK        N +  V+      +    +   IHG +    +   +D F++G+ +L
Sbjct: 246 DREGEKCTNAIVFCNRKVDVDIVAKSLKKHGYNAEPIHGDLDQSQRTRTLDGFRDGSIRL 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIA+ V   G+DV   S +   +        +H++ GR GR         +  P   KN 
Sbjct: 306 LIASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRI-GRTGRAGREGKAFTIVSPRDEKNF 364

Query: 605 YTRLSVLKN 613
                +L+ 
Sbjct: 365 EDVEKLLQK 373


>gi|254438460|ref|ZP_05051954.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
 gi|198253906|gb|EDY78220.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
          Length = 530

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/392 (18%), Positives = 142/392 (36%), Gaps = 39/392 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + ++ K+ + +      +PT  Q  AI   L+          +     G+GKT    + M
Sbjct: 7   LKLDAKVLKAVEETGYTTPTPIQAGAIPPALEGRDV------LGIAQTGTGKTAGFTLPM 60

Query: 315 AAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
              ++ G       +++++AP   LA Q  E    Y + T++   ++ G +    +   +
Sbjct: 61  ITMLKRGRARARMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGVSFKEQDNLI 120

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQK-----A 418
           +R       ++I T     D  +  KLIL     ++VDE  R      +   ++      
Sbjct: 121 DR----GVDVLIATPGRLLDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFGLTP 176

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKI-----TEKPAGRKPIKTVIIPINRIDEVIE 473
                L  +AT  P    +T+    + +KI                 +     +  E IE
Sbjct: 177 FTRQTLFFSATMAPEIERITNTFLSNPAKIEVARAATTSETITQGVIMFKGSKKTSEAIE 236

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           + K  L     A             N +  V+             + IHG +    +   
Sbjct: 237 KQK--LLRDIIASEGANCRNGIIFCNRKIDVDAVAKSMTKAGLDASPIHGDLEQSHRMRT 294

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F++GT + L+A+ V   G+D+ + S +   +        +H++ GR GR  +  + I
Sbjct: 295 LAKFRDGTLRFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRI-GRTGRAGKTGATI 353

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           ++  P   KN      +++       +   DL
Sbjct: 354 MICTPRDQKNLDDIERLVE-----MAVPRMDL 380


>gi|70994152|ref|XP_751923.1| DEAD/DEAH box helicase [Aspergillus fumigatus Af293]
 gi|74671396|sp|Q4WPE9|PRP28_ASPFU RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|66849557|gb|EAL89885.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus Af293]
 gi|159125162|gb|EDP50279.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus A1163]
          Length = 796

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 140/382 (36%), Gaps = 50/382 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q +AI   LQ          I     GSGKT   L+ +   +             
Sbjct: 386 EPTPIQRAAIPIALQSRD------LIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRK 439

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G  A+++AP   LAQQ     +K+TQ     V  I G      +  +L       A I
Sbjct: 440 NDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRN----GAEI 495

Query: 379 IIGTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLTQKA-----------T 419
           II T     D I+   L+L           D     G ++ +     A            
Sbjct: 496 IIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEE 555

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A +   M +    +T++ T+     + +I  K   R  I T+      +D V +R++++ 
Sbjct: 556 AENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEMIA 615

Query: 480 SEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
            E K+   +   +   +         N +   +      +    S   +HG  +   +E+
Sbjct: 616 GEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKQMGFSSVTLHGSKTQEQREA 675

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            + S +NG+  +L+AT +   GIDV D S+++  N  +   +  H++ GR GR  +    
Sbjct: 676 ALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRI-GRTGRAGKSGVA 734

Query: 593 ILLYHPPLSKNSYTRLSVLKNT 614
           I       +   Y    +L  +
Sbjct: 735 ITFLGNEDADVMYDLKQMLMKS 756


>gi|24644481|ref|NP_731031.1| Rm62, isoform D [Drosophila melanogaster]
 gi|281361218|ref|NP_001163528.1| Rm62, isoform H [Drosophila melanogaster]
 gi|23175946|gb|AAN14331.1| Rm62, isoform D [Drosophila melanogaster]
 gi|51092049|gb|AAT94438.1| RE56857p [Drosophila melanogaster]
 gi|272476832|gb|ACZ94826.1| Rm62, isoform H [Drosophila melanogaster]
          Length = 575

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 134/378 (35%), Gaps = 41/378 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       +           +     GSGKTL  ++     +          G  
Sbjct: 159 APTAIQAQGWPIAMSG------SNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPI 212

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  ++ +    + G  P+  + + L+R       I+I T 
Sbjct: 213 ALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE----IVIATP 268

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     S    +   +++DE  R          +K  +         P  +TL+ +
Sbjct: 269 GRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR------PDRQTLMWS 322

Query: 439 SLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    ++ ++ E   G      +    +   + I +V++       E K    +    + 
Sbjct: 323 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDT 382

Query: 495 KKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           +  V+        F      IHG  S  +++ V+  F++G   +L+A
Sbjct: 383 SESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 442

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV     +I  +        +H++ GR GR     +    +    +K +   
Sbjct: 443 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRI-GRTGRSNTKGTSFAFFTKNNAKQAKAL 501

Query: 608 LSVLKNTEDGFLIAEEDL 625
           + VL+        A E+L
Sbjct: 502 VDVLREANQEINPALENL 519


>gi|327262701|ref|XP_003216162.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Anolis
           carolinensis]
          Length = 420

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 131/343 (38%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 59  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 112

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 113 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 168

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 169 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 228

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 229 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 281

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 282 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 341

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S+II  +  +     +H++ GR GR       I      
Sbjct: 342 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKND 383


>gi|228961717|ref|ZP_04123322.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228797966|gb|EEM44974.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 481

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 80/372 (21%), Positives = 138/372 (37%), Gaps = 40/372 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTGLGYDHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+   L L  +        DE    G   ++   + +  T    +L +AT  
Sbjct: 129 TPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +I         I+  +  +   +++     V   E   +  I 
Sbjct: 189 EDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  +R          +        IHG M   D+  VMD F+ G    L+AT 
Sbjct: 249 CRTQENVDHVYRQ--------LKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFFYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P  ++       
Sbjct: 301 VAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 610 VLKNTEDGFLIA 621
            +     GF I+
Sbjct: 360 YI-----GFEIS 366


>gi|225390528|ref|ZP_03760252.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
           DSM 15981]
 gi|225043410|gb|EEG53656.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
           DSM 15981]
          Length = 595

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/381 (18%), Positives = 138/381 (36%), Gaps = 30/381 (7%)

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVE----GKIAQKILRNIPFSP-TKSQESAIKDILQ 286
               G+      RK+        +  +     +   + +  + F   +  Q  AI   ++
Sbjct: 8   RAPGGEAMRKRQRKKGIYYYMEAMKFDTLQLDERILRAVTEMGFEEASPIQAQAIPVAME 67

Query: 287 DMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKK 343
                     I Q   G+GKT    I +   V+      QA+++ P   LA Q  E +++
Sbjct: 68  GRD------MIGQAQTGTGKTAAFGIPLLQKVDPKVKKLQAIVLLPTRELAIQVAEEVRR 121

Query: 344 YTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDE 402
             +    I V  I G      + ++L+        +IIGT     D ++   + L  V+ 
Sbjct: 122 LGKFMHGIKVLPIYGGQDIVKQIRSLKD----GTQVIIGTPGRVMDHMRRKTVKLDYVNT 177

Query: 403 QHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI 462
                  + L +        +L        +TL+ ++     I++I  K   ++P+   +
Sbjct: 178 VVLDEADEMLNMGFLEDMETILSQL-PEERQTLMFSATMPPAIAEIARKF-QKEPVTVRV 235

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEK-------KESNFRSVVERFNSLHEHFT 515
           +        + +    +    K   +C  ++           +  + V E   +L     
Sbjct: 236 VKKELTVPKVTQYYYEVKPKNKVEVMCRLLDLYAPKLSIVFCNTKKQVDELVQALQGRGY 295

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            +  + HG +  + ++ VM+SF+NG   +L+AT V   GIDV D   +   +        
Sbjct: 296 FAEGL-HGDLKQMQRDRVMNSFRNGRTDILVATDVAARGIDVGDVEAVFNYDIPQDDEYY 354

Query: 576 LHQLRGRVGRGEEISSCILLY 596
           +H++ GR GR         L 
Sbjct: 355 VHRI-GRTGRAGREGKAFSLV 374


>gi|126664124|ref|ZP_01735117.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
 gi|126623838|gb|EAZ94533.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
          Length = 419

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 130/375 (34%), Gaps = 41/375 (10%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
              Q+ L    ++ PT  QE AI +IL           +     G+GKT    I +   +
Sbjct: 10  NNIQQALEEEGYTNPTPIQEQAIPEILLGQD------LVACAQTGTGKTGAFAIPILNLI 63

Query: 319 ---------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                        + +++ P   LA Q  E  K Y + T +   +I G + Q  +   L+
Sbjct: 64  HKIVGSAKKAKHIRTLVVTPTRELAIQIDESFKTYGKYTNVKSLVIFGGVNQVPQVNELK 123

Query: 370 RIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGV--QQRLKLTQKAT 419
                   ++I T     D  +         + L+L   D+    G     +  +     
Sbjct: 124 M----GIDVLIATPGRLLDLHKQGFIDLDHLHHLVLDEADQMLDMGFINDVKKIIKLTPD 179

Query: 420 APHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
               LL +AT     R L  T L       +T   +  + +   +  +N+ D+ +   ++
Sbjct: 180 NRQTLLFSATMPIAIRELADTFLTRPKYISVTPISSTAENVSQKVYFVNKDDKRLLLKQL 239

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           ++ E      +  +         +   +    + +        IHG  S   ++ V++ F
Sbjct: 240 IIEESLSNALVFTRT--------KHGADNIVKVLKKAHIKAEAIHGDKSQNARQRVLEQF 291

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN    +L+AT +   GID+     +I  +  +     +H++ GR GR       I    
Sbjct: 292 KNKEIDILVATDIAARGIDIEQLPFVINFDIPNISETYVHRI-GRTGRAGNSGLAISFCG 350

Query: 598 PPLSKNSYTRLSVLK 612
                       +++
Sbjct: 351 KDEKPYWLDIEKLIR 365


>gi|284929206|ref|YP_003421728.1| superfamily I DNA/RNA helicaseI [cyanobacterium UCYN-A]
 gi|284809650|gb|ADB95347.1| DNA/RNA helicase, superfamily II [cyanobacterium UCYN-A]
          Length = 477

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/367 (19%), Positives = 136/367 (37%), Gaps = 34/367 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L+ + F  PT+ QE AI  +L+          + Q   G+GKT    + +   V+     
Sbjct: 18  LKELGFENPTEIQEKAIPLMLEGHDV------LGQSQTGTGKTAAYSLPILEKVDIQDPS 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +I+ P   LAQQ  E +K +T   ++ +  + G      + ++LER       I++G
Sbjct: 72  VQVLILTPTRELAQQVAEALKDFTVRRRLYILTVYGGQSIDRQIRSLER----GVQIVVG 127

Query: 382 THALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D I+  KLIL  +     DE         +   +        ++  TP  R+  
Sbjct: 128 TPGRVIDLIERKKLILDSLRWAVLDEADEMLSMGFIDDVKT-------ILKKTPESRSTA 180

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
             S       +       + P+   +         IE+   ++  G         + E +
Sbjct: 181 CFSATMPREIRELVNQFLKSPVTISVERTQAAPTRIEQNIYMVPRGWSKRKALQPVLEIE 240

Query: 497 ESNFRSVVER-------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +     +  R         +  +     +   HG +S   +E ++  F++G  KL++AT 
Sbjct: 241 DPESAIIFVRTKQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRIKLVVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   G+DV   S +I  +        +H++ GR GR  +    I +      +       
Sbjct: 301 IAARGLDVEGLSHVINYDLPDNSETYIHRI-GRTGRAGKTGKAISIVESADRRMIRQIER 359

Query: 610 VLKNTED 616
            L+   D
Sbjct: 360 KLRQKID 366


>gi|239613405|gb|EEQ90392.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis ER-3]
          Length = 1197

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 97/516 (18%), Positives = 179/516 (34%), Gaps = 76/516 (14%)

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
             +++ +  P  IF +  DV+   I+                   EA   L      I  
Sbjct: 466 NFSKLKLPKPEAIFGDEDDVDLKAIDP------------------EADDFLA-----ITS 502

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL--AGQIALLLMRKQFKK 249
              +KK  P I      ++     KDF         L  +E+     ++  + +R     
Sbjct: 503 KARKKKDLPPINH--EKMNYEPFRKDFYTEPVDLSELTDEEVAALRLELDGIKVRGVDVP 560

Query: 250 EIGIPINVEGKIAQKI--LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           +     +  G   Q +  +R + +  PT  Q  AI  I+           I     GSGK
Sbjct: 561 KPVQKWSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDV------IGVAKTGSGK 614

Query: 307 TLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           T+  L+ M   +          G   +IM P   LA Q ++  K + +   +      G 
Sbjct: 615 TIAFLLPMFRHIMDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALSLRAVCAYGG 674

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQ 410
            P   +   L+R     A I++ T     D +           ++  V++DE  R     
Sbjct: 675 APIKDQIAELKR----GAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMG 730

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
                        +L    P  +T++ ++    ++  +  K    KP++ ++   + +  
Sbjct: 731 FEPQVM------RILGNVRPQRQTVLFSATFPRNMEALARKTLT-KPVEIIVGGRSVVAP 783

Query: 471 VIERLKVVLSEGKKAYWICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---I 518
            I ++  V +E  K   +   +         E+ +   F    E  + L           
Sbjct: 784 EITQVVEVRNEDTKFVRLLALLGDLYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPC 843

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG    +D++S +D FK G   +LIAT+V   G+DV    +++  +A +     +H+
Sbjct: 844 MSIHGGKDQVDRDSTIDDFKAGVFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR 903

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
             GR GR     + +        + S      LK +
Sbjct: 904 -AGRTGRAGNTGTAVTFLTEDQERYSVDISKALKQS 938


>gi|229826321|ref|ZP_04452390.1| hypothetical protein GCWU000182_01693 [Abiotrophia defectiva ATCC
           49176]
 gi|229789191|gb|EEP25305.1| hypothetical protein GCWU000182_01693 [Abiotrophia defectiva ATCC
           49176]
          Length = 522

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/353 (20%), Positives = 129/353 (36%), Gaps = 42/353 (11%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
           + + +   T  Q  AI   +           + Q   G+GKT    I +   +++G    
Sbjct: 12  KELGYEEATPIQTEAIPVAITGRD------ILGQAQTGTGKTAAFSIPILNNIDSGNKHL 65

Query: 323 QAVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QAV++ P   LA Q   E  K       I +  + G      + K+L++     A II+G
Sbjct: 66  QAVVLCPTRELALQVCGEIRKLSRYMHGIKLVPVYGGQDIVKQIKSLKQ----GAQIIVG 121

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D ++   +        +L   DE    G +  +           +L       +
Sbjct: 122 TPGRVMDHMRRKTVKFDQVKIMVLDEADEMLDMGFRDDI---------ETILAEVPEERQ 172

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC---- 489
           T++ ++     I  IT K   +K     I       E IE+    +    K   +     
Sbjct: 173 TMLFSATMPKPILDITRKY-QKKAQNIKIAKKELTVENIEQYYYEVRRNYKDEILSRILD 231

Query: 490 ---PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              P++     +  + V E  N L      +  + HG +    ++ VM +F+NG  ++L+
Sbjct: 232 MYNPELSIVFCNTKKKVEEVANELQGRGYFAEGL-HGDLKQQQRDRVMGNFRNGKTEILV 290

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           AT V   GIDV    ++I  +        +H++ GR GR  +    +      
Sbjct: 291 ATDVAARGIDVKGVDLVINYDLPQDDEYYVHRI-GRTGRAGKAGLALSFVSGK 342


>gi|195169451|ref|XP_002025535.1| GL15249 [Drosophila persimilis]
 gi|194109014|gb|EDW31057.1| GL15249 [Drosophila persimilis]
          Length = 688

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 141/383 (36%), Gaps = 46/383 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L        ++ I Q   GSGKTL  ++     +          G  
Sbjct: 8   KPTAIQSQGWPIAL----SGRDLVGIAQ--TGSGKTLAYMLPAIVHIGKQPPILRGEGPI 61

Query: 324 AVIMAPIGILAQQHYEFIKKYTQ--NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           A+++AP   LAQQ    ++ Y      +I    I G   +  + + LER       +II 
Sbjct: 62  ALVLAPTRELAQQIQSVVRDYGHLCQPEIRHTCIFGGSSKVPQARDLER----GVEVIIA 117

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPI 431
           T     D ++           L+L   D     G   Q R  + Q      V++ +AT  
Sbjct: 118 TPGRLIDFLENRNTNLARCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSATWP 177

Query: 432 PRTLVLTSLGDIDISKI----TEKPAGRKP-----IKTVIIPINRIDEVIERLKVVLSEG 482
                L      D  +I        A         I T +    R+  +++ +    +  
Sbjct: 178 KEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQRMVRLLKEIAPTNNSA 237

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
                I   +E K +       +    +      + +I HG  +  +++SV+  F+NG  
Sbjct: 238 NNGSKIIIFVETKIKVE-----DILQIIRTEGYIATSI-HGDKTQNERDSVLKDFRNGKS 291

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +LIAT V   G+DV D   +I  +  +     +H++ GR GR +++ +    + P  +K
Sbjct: 292 NILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRI-GRTGRCQQLGTAYTFFTPDNAK 350

Query: 603 NSYTRLSVLKNTEDGFLIAEEDL 625
            +   +SVL+        A  DL
Sbjct: 351 QARELISVLEEAGQTPSQALLDL 373


>gi|168183325|ref|ZP_02617989.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf]
 gi|182673470|gb|EDT85431.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf]
          Length = 425

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 135/358 (37%), Gaps = 38/358 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------QA 324
           T  QE +I  IL           +     G+GKT    + +   +             +A
Sbjct: 25  TPIQEKSIPYILDGKD------LVGCAQTGTGKTAAFAVPVLQNLSKDKKANKNPRPIRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  E  + Y +   +   +I G + Q  + K L         I+I T  
Sbjct: 79  LVLAPTRELAIQIAESFECYGKYINLKSAVIFGGVSQNPQTKVLRE----GVDILIATPG 134

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I    +   ++DE  R      +   +K      ++     I + L+ ++
Sbjct: 135 RMLDLFNQKYIDLRNIEFFVLDEADRMLDMGMIHDVKK------IISKLPKIRQNLLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
               +I+K+ +    + PI+  + P++   + I +    + + +K   +   +++K    
Sbjct: 189 TMPSEITKLVDS-IVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLLKDKSIES 247

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +     N + +    +      IHG  S   ++  +++FK G  ++L+AT +   
Sbjct: 248 ALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVATDIAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           GIDV + S +   N        +H++ GR GR       I       +K+      ++
Sbjct: 308 GIDVNELSHVFNYNLPDVPETYVHRI-GRTGRAGAKGVAISFCDIEETKSLKAIEKLI 364


>gi|68536452|ref|YP_251157.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
 gi|68264051|emb|CAI37539.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
          Length = 713

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 144/385 (37%), Gaps = 42/385 (10%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
           + + F  P+  Q   I  +++          +     G+GKT    + + + ++      
Sbjct: 90  KKVGFEVPSPIQAETIPVLMEGHDV------VGLAQTGTGKTAAFALPILSRIDVSKRHP 143

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+++AP   LA Q  E  + ++++   I V  I G      +   L R     AHI++G
Sbjct: 144 QALVLAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLRR----GAHIVVG 199

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D ++   L        +L   DE    G Q+ ++   +           TP  +
Sbjct: 200 TPGRVIDHLEKGSLDISELRFMVLDEADEMLNMGFQEDVERILED----------TPSDK 249

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + L S       +   K     P +  +    R  E IE+  +++S   K   +   +E
Sbjct: 250 QVALFSATMPSGIRRLSKQYLSDPREITVKATQRTSENIEQDYLLVSHRDKLDALTRILE 309

Query: 494 --EKKESNF----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             E +        ++  E           + A I+G +    +E  +D  K+G   +L+A
Sbjct: 310 ITEFEAMIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVA 369

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV   + +   +  H   + +H++ GR GR       IL   P   +   + 
Sbjct: 370 TDVAARGLDVDRITHVFNYDIPHDTESYVHRI-GRTGRAGRKGRAILFVTPRERRLLKSI 428

Query: 608 LSVLKNTEDGFLIAEED--LKQRKE 630
               K+  +   +   D   + RKE
Sbjct: 429 ERATKSRLNEIELPTVDAVNEARKE 453


>gi|116617572|ref|YP_817943.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096419|gb|ABJ61570.1| Superfamily II DNA and RNA helicase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 528

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/341 (19%), Positives = 127/341 (37%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE  I   L           I Q   G+GKT    + +   ++      QA+I++P 
Sbjct: 25  TPIQEKTIPLTLAGRDV------IGQAQTGTGKTAAFGLPILEHIDLNNKNIQALIVSPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E +KK  ++ ++ V+++ G      + + L+        I++GT     D I
Sbjct: 79  RELAIQTAEELKKLGRDKRVDVQVVFGGADIRRQIQNLKS----HPQILVGTPGRLLDHI 134

Query: 391 QYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
                       L+L   DE    G        +++       LL +AT  P  + + + 
Sbjct: 135 NRKTVKIDNVRTLVLDEADEMLNMGFLDDIEAIISKTPAERQTLLFSATMPPAIKRIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  +I  K      +    + +   ++     ++   +  K   +  +       
Sbjct: 195 FMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIFDVQAPKLAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  VE  +   E      A +HG ++   +  V+  FK+    +L+AT V   G+DV 
Sbjct: 249 --KRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILVATDVAARGLDVK 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           D S +   +      + +H++ GR GR       +    P 
Sbjct: 307 DVSHVYNFDIPQDPESYVHRI-GRTGRAGAKGVSVTFVAPN 346


>gi|298571703|gb|ADI87855.1| hypothetical protein AKSOIL_0347 [uncultured bacterium Ak20-3]
          Length = 527

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/396 (17%), Positives = 134/396 (33%), Gaps = 39/396 (9%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDI 284
           + L    L          ++Q   E            Q+++ +  FS PT  Q  AI  +
Sbjct: 6   KTLGRLGLSDDSTLKQANQEQLDSEANFKDFPFDMKLQQVIADEGFSIPTPIQVRAIPIV 65

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ----------AVIMAPIGILA 334
           L+          I     G+GKT    + +   +    Q           +++ P   LA
Sbjct: 66  LEGKD------IIACAQTGTGKTAAFALPILHKLVQDAQTEKQRSYHPKVLVLVPTRELA 119

Query: 335 QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394
            Q  E    +  N  +    I G +    +   L R +     +++ T     D ++   
Sbjct: 120 LQVQETFAAFGHNLGVNSIAIIGGVSVGQQMVNLRRRS---PQVVVATPGRLLDILEQGG 176

Query: 395 LILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           + L  +     DE  R      +  T++       ++ A P  R  ++ S          
Sbjct: 177 INLSSIHTLILDEADRMLDMGFIPDTKR-------IVKAIPKERQSLMFSATISSEVNAL 229

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER--- 506
            K     P+   + P     E IE+L   +    K   +   +E  + +           
Sbjct: 230 SKQIMNTPVHISVAPKRASAEGIEQLLYSVPGDNKRALLFHLLENDEMNRVIIFTRTKFG 289

Query: 507 FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L +          +IH   S   ++SV + F++G  ++L+AT +   GIDV   S +
Sbjct: 290 ASKLSDSLIREGIRSKVIHSGKSQAARQSVWEHFRSGKLRVLVATDLASRGIDVDGISHV 349

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +  +        +H++ GR GR  +    +    P 
Sbjct: 350 VNYDLPDCAETYIHRI-GRTGRANKTGIALSFCSPD 384


>gi|297845068|ref|XP_002890415.1| hypothetical protein ARALYDRAFT_472328 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336257|gb|EFH66674.1| hypothetical protein ARALYDRAFT_472328 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 827

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/397 (19%), Positives = 157/397 (39%), Gaps = 45/397 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           ++ + +  P   Q  A+  I+           I     GSGKTL  ++ M   ++     
Sbjct: 206 MKKLNYEKPMPIQTQALPIIMSGRD------CIGVAKTGSGKTLGFVLPMLRHIKDQPPV 259

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G   ++MAP   L QQ +  I+K+++   I    + G    A +   L+R      
Sbjct: 260 EAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTE--- 316

Query: 377 HIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            I++ T     D +           ++  +++DE  R                  ++   
Sbjct: 317 -IVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQIT------RIIQNI 369

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  +T++ ++     +  +  K    KP++  +   + +++ I +L  V  E  + + +
Sbjct: 370 RPERQTVLFSATFPRQVETLARKVLN-KPVEIQVGGRSVVNKDITQLVEVRPESDRFFRL 428

Query: 489 CPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGT 541
              + E  E      F    E+ ++L+     S      +HG     D+ES +  FK+  
Sbjct: 429 LELLGEWYEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKSNV 488

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           C LLIAT+V   G+DV +  +++  +A +     +H++ GR GR       +       +
Sbjct: 489 CNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRV-GRTGRAGRKGCAVTFISEDDA 547

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           K +   +  L+ +E       +DLK   +G +  +KQ
Sbjct: 548 KYAPDLVKALELSE---QPVPDDLKALADGFMAKVKQ 581


>gi|71277821|ref|YP_268464.1| RNA helicase DeaD [Colwellia psychrerythraea 34H]
 gi|71143561|gb|AAZ24034.1| RNA helicase DeaD [Colwellia psychrerythraea 34H]
          Length = 611

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 131/357 (36%), Gaps = 35/357 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           T  Q   I  +L           + +   G+GKT    +   A ++      Q +++AP 
Sbjct: 39  TDIQALTIPPLLAGKDV------LGEAQTGTGKTAAFGLPALAKIDTSIKKPQLMVLAPT 92

Query: 331 GILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  E I+ + ++   + V  + G      + + LER     A +++GT     D 
Sbjct: 93  RELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLER----GAQVVVGTPGRLMDH 148

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP--RTLVL 437
           ++   L L  +        DE    G  + ++           + L +AT  P  R +  
Sbjct: 149 LRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCLFSATMPPAIRKIAN 208

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
             L D +  K+      +  I      ++ I ++    ++       A  I  +      
Sbjct: 209 RFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALERIAEVVEYDAMIIFVRTRN--- 265

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                 V+    L      ++A+ +G ++   +E  +D  K+G   +L+AT V+  G+D+
Sbjct: 266 ----DTVDIAEKLERAGYPALAL-NGDLNQAQRERCIDQMKSGKSSILVATDVVARGLDI 320

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
              S++I  +      A +H++ GR GR       I    P    +      +   T
Sbjct: 321 PRISLVINYDLPGDNEAYVHRI-GRTGRAGREGMSIAFVRPREMYSIRHYERLTNGT 376


>gi|326476402|gb|EGE00412.1| Pre-mRNA-processing ATP-dependent RNA helicase prp5 [Trichophyton
           tonsurans CBS 112818]
          Length = 1182

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 138/379 (36%), Gaps = 47/379 (12%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----- 318
           ++R + +  PT  Q  A+  I+           I     GSGKT+  L+ M   +     
Sbjct: 562 VIRKLGYEGPTSIQSQAVPAIMSGRDV------IGVAKTGSGKTIAFLLPMFRHIRDQRP 615

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  ++IM P   LA Q +   + + +   +      G  P   +   L+R     
Sbjct: 616 LENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKR----G 671

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K          
Sbjct: 672 AEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIR---- 727

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K    KPI+ ++   + +   I ++  V ++  K   
Sbjct: 728 --PNRQTVLFSATFPRNMEALARKTL-SKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVR 784

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  + L             IHG    ID++S +D
Sbjct: 785 LLELLGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTID 844

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    +++  +A +     +H+  GR GR     + +  
Sbjct: 845 DFKAGIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 903

Query: 596 YHPPLSKNSYTRLSVLKNT 614
                 + S      LK +
Sbjct: 904 LTEDQERYSVDISKALKQS 922


>gi|225677315|ref|ZP_03788292.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590642|gb|EEH11892.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 402

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/343 (22%), Positives = 140/343 (40%), Gaps = 34/343 (9%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIM 327
           F PT  Q  AI   LQ          +     G+GKTL   I + A +      G A+++
Sbjct: 17  FVPTPIQIQAIPLALQGKD------ILGSAQTGTGKTLAFAIPLVAKLLNEPNTGSALVI 70

Query: 328 APIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P   LA Q    I+K   QN+ + V ++ G  P   +   L++    +  I+IGT    
Sbjct: 71  VPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLNQLQK----KPQIVIGTPGRI 126

Query: 387 QDSIQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLTSL 440
            D I+   LI     ++++DE  R          ++       +M   P I +TL+ ++ 
Sbjct: 127 IDHIERKTLINRNVSVLVLDETDRMFDMGFGVQIEE-------IMKHLPKIRQTLMFSAT 179

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
              DI K+ EK    +P +  +         I++  V  SE +K   +  Q+ +++    
Sbjct: 180 LPGDIVKLAEKYLN-RPERISVDCEATTSVKIKQEIVYASESEKYEKLVTQLCQREGSII 238

Query: 497 -ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   ++  +       S   IHG +    +E V++SF+ G  ++++AT V   G+
Sbjct: 239 IFVKTKRGADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVASRGL 298

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           D+     +I  +A       +H++ GR  R       +    P
Sbjct: 299 DIPHIQHVINYDAPQSQADYIHRI-GRTARAGAEGYALSFVTP 340


>gi|224052974|ref|XP_002297644.1| predicted protein [Populus trichocarpa]
 gi|222844902|gb|EEE82449.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 132/378 (34%), Gaps = 48/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQ---- 323
            PT  Q  AI   L           +     GSGKT      + + +    +   Q    
Sbjct: 143 KPTPVQRHAIPISLTGRD------LMACAQTGSGKTAAFCFPIISGIMKMQDQSAQRPLR 196

Query: 324 --------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                   A+I++P   L+ Q +E  KK++  T + V +  G  P   + + LER     
Sbjct: 197 GARTVYPLALILSPTRELSMQIHEEAKKFSYQTGVKVVVAYGGAPIHQQLRELER----G 252

Query: 376 AHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
             I++ T     D ++  ++ L ++     DE  R          Q       + M    
Sbjct: 253 VDILVATPGRLVDLLERARVSLQMIKYLALDEADRMLDMGFEP--QIRKIVEQMDMPPPG 310

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +T++ ++    +I ++         +   +  +    ++I +    + E  K   +  
Sbjct: 311 SRQTMLFSATFPKEIQRLASDFLA-SYVFLAVGRVGSSTDLIAQRVEFVQESDKRSHLMD 369

Query: 491 QIEEKKES-------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            +  ++ +               +   +               IHG  S  ++E  + SF
Sbjct: 370 LLYAQRANGVQGKQDLTLVFVETKKGADSLEHWLCINNFPATSIHGDRSQQEREQALRSF 429

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+G   +L+AT V   G+D+   + ++  +  +     +H++ GR GR  +       ++
Sbjct: 430 KSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRI-GRTGRAGKSGLATAFFN 488

Query: 598 PPLSKNSYTRLSVLKNTE 615
              +  +     +++   
Sbjct: 489 EGNASMARPLSELMQEAN 506


>gi|222086716|ref|YP_002545250.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
 gi|221724164|gb|ACM27320.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
          Length = 556

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 128/364 (35%), Gaps = 31/364 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +LQ          I     G+GKT    + +   +            +
Sbjct: 40  TPTPIQAQAIPLVLQGRD------LIGLAQTGTGKTAAFGLPIIEMLLKDAKRPDNRTVR 93

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   L  Q  + +K + + T + + ++ G      ++  LER       I++ T 
Sbjct: 94  TLILAPTRELVNQIADNLKLFVRKTALRINVVVGGASINKQQLQLER----GTDILVATP 149

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D I    L L  V         Q L L        +  M      +T++ ++    
Sbjct: 150 GRLLDLISRRALSLGQVSYLVLDEADQMLDLGFIHDLRKISKMVPA-KRQTMLFSATMPK 208

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---- 499
            I+ +  +         V  P    D+V + +  V  +  K   +   I    +      
Sbjct: 209 TIADLAAEYLTNPVKVEVSPPGKAADKVEQYVHFVSGQNHKTEILKESISANPDGRAMVF 268

Query: 500 --FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   E+     EH   + A IHG  S   +E  +  F++G  ++L+AT V   GID+
Sbjct: 269 LRTKHGAEKLMKHLEHVGFAAASIHGNKSQGQRERALKGFRDGEVRVLVATDVAARGIDI 328

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              + +   +      A +H++ GR  R       I    P  ++       ++     G
Sbjct: 329 PGVTHVYNYDLPEVPDAYVHRI-GRTARAGRDGIAIAFCAPDEARLLRDIERLM-----G 382

Query: 618 FLIA 621
             IA
Sbjct: 383 IEIA 386


>gi|171463886|ref|YP_001797999.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193424|gb|ACB44385.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 479

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/388 (18%), Positives = 141/388 (36%), Gaps = 44/388 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             ++ +I + +      +PT  Q  +I  +L      N ++   Q   G+GKT   ++ +
Sbjct: 36  FGLDPQIQKAVAEQGYNTPTPIQAQSIPHVLAG----NDLMGAAQ--TGTGKTAAFVLPI 89

Query: 315 AAAVEAGG-----------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
              +               +A+++ P   LA Q  E    Y+++T +   ++ G +    
Sbjct: 90  IQKILRHASNSASPARHPIRALVLTPTRELAVQVAENAASYSKHTDLRAAVVYGGVDMKE 149

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQK- 417
           +   L         I+I T     D I        ++ ++++DE  R      L   Q+ 
Sbjct: 150 QVAILRN----GVEILIATLGRLLDHIGSKVANLSQVEILVLDEADRMLDMGFLPDLQRI 205

Query: 418 ----ATAPHVLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE- 470
                     LL +AT  P    L  + L      ++  + A    +K V+  ++  D+ 
Sbjct: 206 ISLIPAQRQTLLFSATFSPEIKKLAQSYLRSPVTVEVARQNAAADTVKQVVHMVSSADKQ 265

Query: 471 --VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
             +++ L+     G     I          N R    + +   E        IHG     
Sbjct: 266 RAIVKVLEARARAGLSRQCIIFT-------NSRLGCAKLSRTLERDGIKAGAIHGDKGQG 318

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           ++   +D+FK+G  + L+AT V   G+D+ D   +I     +     +H++ GR GR   
Sbjct: 319 ERTLTLDAFKSGAIEALVATDVAARGLDIPDMPCVINHELPYNAEDFIHRI-GRTGRAGS 377

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTED 616
               I L      +       ++K   D
Sbjct: 378 KGDAIALVDLSEKRLLDDIEKLMKRKLD 405


>gi|229103076|ref|ZP_04233764.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28]
 gi|228680360|gb|EEL34549.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28]
          Length = 450

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDTESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|229173149|ref|ZP_04300699.1| ATP-dependent RNA helicase [Bacillus cereus MM3]
 gi|228610326|gb|EEK67598.1| ATP-dependent RNA helicase [Bacillus cereus MM3]
          Length = 446

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDPKSSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|225719342|gb|ACO15517.1| Eukaryotic initiation factor 4A-III [Caligus clemensi]
          Length = 403

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 133/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ +IK IL+          I Q   G+GKT    I++  +++      Q ++++
Sbjct: 52  KPSAIQQRSIKPILKGRDV------IAQAQSGTGKTATFSISILQSIDTSLRETQCLVLS 105

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 106 PTRELAVQIQKVLLALGDYMNVQCHACIGGTNLGEDIRKLDYGQ----HVVSGTPGRVYD 161

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++            + L++AT     L +T
Sbjct: 162 MIRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQICLISATLPHEILEMT 221

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 222 SKFMADPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 274

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   +++++M  F++G  ++LI T V   GID
Sbjct: 275 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGQSRVLITTDVWARGID 334

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S++I  +  +     +H++ GR GR       I        +             D
Sbjct: 335 VQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKNDDIRILRDIEQYYSTQID 393

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 394 EMPMNVADL 402


>gi|300113218|ref|YP_003759793.1| DEAD/DEAH box helicase domain-containing protein [Nitrosococcus
           watsonii C-113]
 gi|299539155|gb|ADJ27472.1| DEAD/DEAH box helicase domain protein [Nitrosococcus watsonii
           C-113]
          Length = 500

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/361 (21%), Positives = 136/361 (37%), Gaps = 35/361 (9%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
              +   I Q I +    +PT  Q  AI  +L           + Q   G+GKT    I 
Sbjct: 12  SFAISAPILQAIKQVGYETPTLIQARAIPHLLAGHD------LVGQAQTGTGKTAAFAIP 65

Query: 314 MAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALE 369
               +E      QA+++ P   LA Q  E  + Y ++ +    + I G     ++ + L+
Sbjct: 66  TLERLELSRREPQALVLVPTRELAIQVAEAFQSYARHLEDFHVLPIYGGQSMGNQLRQLK 125

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKAT 419
           R     AH+I+GT     D ++   LIL  +        DE  + G  + +   L Q  T
Sbjct: 126 R----GAHVIVGTPGRIMDHLRRKSLILTTLTTVILDEADEMLKMGFIEDVEWILKQVPT 181

Query: 420 APHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              V L +AT     R +    L      KI  K A    I      ++ + ++    ++
Sbjct: 182 KRQVALFSATMPTSVRNIASRHLHAPQDIKIKGKTASLPAINQRYWLVSGLHKLDALTRM 241

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           + +E   A  I  +         +   E           + A ++G M    +E V+D  
Sbjct: 242 LEAEEYDATIIFVRT--------KIATEELAKKLTARGYAAAALNGDMPQSSREKVVDQL 293

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K  T  +++AT V   G+DV     ++  +  +     +H++ GR GR     +  L   
Sbjct: 294 KKNTIDIIVATDVAARGLDVKRIGHVVNYDIPYDTGTYIHRI-GRTGRAGRTGTATLFVA 352

Query: 598 P 598
           P
Sbjct: 353 P 353


>gi|296083374|emb|CBI23263.3| unnamed protein product [Vitis vinifera]
          Length = 628

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/379 (17%), Positives = 139/379 (36%), Gaps = 45/379 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            P+  Q  A   +L      +    I     GSGKTL   +     V +  +        
Sbjct: 230 QPSPIQSHAWPFLL------DHRDFIGIAATGSGKTLAFGVPAMMHVLSKRKSKTSKGVN 283

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              ++++P   LAQQ  + + +  ++  +    + G   +  +  +L+        I+IG
Sbjct: 284 PLCLVLSPTRELAQQISDVLCEAGKHCGVKSVCLYGGTSKGPQISSLKS----GVDIVIG 339

Query: 382 THALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T    +D I+     L  V     DE  R                  +L    P  + ++
Sbjct: 340 TPGRLKDLIEMGVCCLTEVSFVVLDEADRMLDMGFE------PEVRSILSQTCPARQMVM 393

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWICPQIEE 494
            ++   + + ++ ++     P+K VI   +     +V++ ++V+    +    +    + 
Sbjct: 394 FSATWPLPVHQLAQEFMDPNPVKVVIGSEDLAANHDVMQIVEVLDDRSRDERLLTLLGKY 453

Query: 495 KKESNFR--------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            K    R            R  ++ +    ++  IHG  +   + + +  FK G+C L+I
Sbjct: 454 HKSQRNRVLVFVLYKKEAARVENMLQRRGWNVVSIHGDKAQQARTAALSLFKKGSCPLMI 513

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ D  ++I  +        +H++ GR GR  +       +       +  
Sbjct: 514 ATDVAARGLDIPDVEVVINYSFPLTTEDYVHRI-GRTGRAGKKGVAHTFFMQENKGLAGE 572

Query: 607 RLSVLKNTEDGFLIAEEDL 625
            ++VLK       I   DL
Sbjct: 573 LVNVLKEAG---QIVPADL 588


>gi|269104692|ref|ZP_06157388.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161332|gb|EEZ39829.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 430

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 131/363 (36%), Gaps = 28/363 (7%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           L  I +   T  Q+ AI  + +          +     G+GKT    + +   +    Q 
Sbjct: 16  LTEIGYEKLTPIQKQAIPQLRRGHDV------LANAQTGTGKTAAFSLPIIQKMLDNPQP 69

Query: 324 -------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                  A+I+AP   L +Q    IK YT+ T +    + G    A + K LE       
Sbjct: 70  RSRMNVRALILAPTRELVEQIANNIKDYTRYTDLTTVAVFGGRKIATQEKKLES----GC 125

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I++ T     + ++   ++L  + E   F    R+      +A   +L      P+ ++
Sbjct: 126 DILVATPGRLLEHLELQNVLLSNI-EFLVFDEADRMLDMGFISAIRTILSNVNSTPQIML 184

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     ++K+  +    KP +  + P N   E +  +   + E +K   +   I +K 
Sbjct: 185 FSATFSSQMNKLAGELLN-KPKRISVTPENSTAETVAHVVYPVDEERKREMLSELIGKKN 243

Query: 497 ESN---FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                 F +  E  N L E          + HG  +   +   +  FK G  ++++AT V
Sbjct: 244 WQQVLVFVNYKETANQLVEELELDGIKAVLCHGDKAQGARRRALKEFKEGKARVMVATEV 303

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+     ++  +        +H++ GR GR  +    +                +
Sbjct: 304 AARGLDIQGLPHVVNYDMPFLAEDYVHRI-GRTGRAGQQGHAVSFVSREEELTLIQIERL 362

Query: 611 LKN 613
           +  
Sbjct: 363 IGQ 365


>gi|161506849|ref|YP_001576803.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC
           4571]
 gi|160347838|gb|ABX26512.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC
           4571]
          Length = 503

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/419 (18%), Positives = 151/419 (36%), Gaps = 36/419 (8%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMA 328
            F   T  QE  I   LQ          I Q   G+GKT    + +  +++   +A+   
Sbjct: 20  GFEEATPIQEQTIPLALQGKDV------IGQAQTGTGKTAAFGLPILQSIDKKEKAIQAI 73

Query: 329 -------PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
                  P   LA Q  E + +  ++    V+++ G      + ++L++       I++G
Sbjct: 74  IQAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIRRQIRSLKQ---HAPSILVG 130

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D ++   + L  V+        + L +        +L   A    +TL+ ++  
Sbjct: 131 TPGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIKDIESILKY-AKNCKQTLLFSATM 189

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ES 498
              I +I EK   + P    I       ++I++  V   E +K   +C  I+ +      
Sbjct: 190 PKPILRIGEKFM-KDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGPDLAL 248

Query: 499 NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F     R + L     +     A IHG +S   + +V+  F+ G   +L+AT V   G+
Sbjct: 249 VFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVAARGL 308

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+   + +   +      + +H++ GR GR  +    +    P       T   + K   
Sbjct: 309 DISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGQNGVSVTFVTPNEIGYMRTIEQLTKKKM 367

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
               +  +D   R +   L   ++ +   +      +        +DA  +L     L 
Sbjct: 368 SPIHLPTDDQALRGQ---LKQAKAEIEDLMKGDLGKYT-------QDASELLDNYSALD 416


>gi|487961|gb|AAB68392.1| Yhr065cp [Saccharomyces cerevisiae]
          Length = 543

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 132/348 (37%), Gaps = 33/348 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
            +N+ +S PT  Q  AI   L+          I     GSGKT    I +   +   +  
Sbjct: 138 CKNLNYSKPTPIQSKAIPPALEGHD------IIGLAQTGSGKTAAFAIPILNRLWHDQEP 191

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A I+AP   LAQQ  E          +    I G M    + + L R    + HIII 
Sbjct: 192 YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR----KPHIIIA 247

Query: 382 THALFQDSIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           T     D ++        KL  +++DE  R      L +        +L +  T    T 
Sbjct: 248 TPGRLMDHLENTKGFSLRKLKFLVMDEADRL-----LDMEFGPVLDRILKIIPTQERTTY 302

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I K+ ++ +   P+K  +    +  + + +  +V+  G K  ++   + E 
Sbjct: 303 LFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEF 361

Query: 496 KESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      ++  ER + L      S   +HG ++   +   +D FK G   +L+AT 
Sbjct: 362 IGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATD 421

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   G+D+    I++  +      + +H++ GR  R       I L  
Sbjct: 422 VAARGLDIPSVDIVVNYDIPVDSKSYIHRV-GRTARAGRSGKSISLVS 468


>gi|299538292|ref|ZP_07051577.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
 gi|298726494|gb|EFI67084.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
          Length = 507

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 93/439 (21%), Positives = 161/439 (36%), Gaps = 54/439 (12%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
           + + F   T  QE  I+  ++          + Q   G+GKT    I +   ++      
Sbjct: 18  KRMGFEEATPIQEGTIRFAIEGRDV------LGQAQTGTGKTAAFGIPLIEKIDPKNPNI 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+++AP   LA Q  E + K   + ++ +  + G      + +AL      +  II+GT
Sbjct: 72  QALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRAL----KNKPQIIVGT 127

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP 432
                D I    L L  V        DE    G    +   L    +    LL +AT  P
Sbjct: 128 PGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPSERQTLLFSATMPP 187

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             R +  T + D +I KI  K      I    +     ++     +++     +   I  
Sbjct: 188 AIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLNVHQPELAIIFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           + +       R V E   +L      +  I HG +S   + SV+  FK     +L+AT V
Sbjct: 248 RTK-------RRVDELAQALSIRGYLAEGI-HGDLSQAKRISVLRQFKENKIDILVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-------LSKN 603
              G+D+   + +   +      + +H++ GR GR  +    +    P        + + 
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKSGLAVTFVTPREMGYLRIVEET 358

Query: 604 SYTRLSVL------KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           +  R++ L      +  E    +A E L+       LG        F     E HD++  
Sbjct: 359 TKKRMTPLRPPTTDEALEGQQRLAVETLEGLIANNNLGD----YRTFAAELLENHDAV-- 412

Query: 658 IARKDAKHILTQDPDLTSV 676
                A   LT++PD T V
Sbjct: 413 DVVAAALRSLTREPDDTPV 431


>gi|182419575|ref|ZP_02950823.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237668830|ref|ZP_04528814.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182376610|gb|EDT74185.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237657178|gb|EEP54734.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 480

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/364 (21%), Positives = 145/364 (39%), Gaps = 39/364 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P++ QE  I +I+ +         I++   GSGKT    I +   V+      Q ++++
Sbjct: 25  KPSEVQEKVIPEIILNKDV------IVKSQTGSGKTAAFAIPICEKVDWNENAPQVLVLS 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E      +  +I    + G  P + + +AL++    + H++ GT     D
Sbjct: 79  PTRELAVQVSEDFVNIGRFKRIKSVAVFGKQPISEQARALKQ----KTHVVCGTPGRVLD 134

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT--PIPRTLV 436
            I    L        ++   DE    G   +++  + +        L +AT     RTL 
Sbjct: 135 HIDRGSLDVKKIKYFVIDEADEMLNMGFIGQVEGVIRRLPKKKVTTLFSATISDEIRTLC 194

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              +       I ++      I+  +  ++  +      ++++ E  +   I  + +E  
Sbjct: 195 EKYMDRPVDISIEKQKVVNDNIEHGLYYVDYNERFKLLNELLICEKPETAVIFGRTKENV 254

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           +       E +N L      S   IHG M   ++ S MDSF+ G  ++L AT V   GID
Sbjct: 255 D-------EIYNFLKSKGY-SCGRIHGGMLQKERLSAMDSFRKGEFRILSATDVAARGID 306

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           + + + +I         A +H++ GR GR  +    I +     SK+    L  ++    
Sbjct: 307 IENITHVINFELPVEKEAYVHRI-GRSGRAGKSGKAISIC----SKHGDRYLKNIEEYI- 360

Query: 617 GFLI 620
           GF I
Sbjct: 361 GFGI 364


>gi|321252102|ref|XP_003192288.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
 gi|317458756|gb|ADV20501.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
          Length = 1063

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 162/449 (36%), Gaps = 64/449 (14%)

Query: 229 AYDELLAGQIALLLMRKQFKKEI---GIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
              EL+  ++  + +R Q   +         +       I      +PT  Q  AI  I+
Sbjct: 370 EEAELMRLEMDGIKIRGQDAPKPVRNWGAFGLPQGCLDVIKHQGWETPTSIQAQAIPAIM 429

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQH 337
                      I     GSGKT+  L+ M   V          G  AV+++P   LA Q 
Sbjct: 430 SGRDV------IGIAKTGSGKTVAFLLPMLRHVRDQRPVSGSEGPIAVVLSPTRELATQI 483

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--- 394
           Y+  + + +   I      G    +    A+++     A ++I T     D +       
Sbjct: 484 YKECQPFLKVLNIRASCCVGGSSISEDIAAMKK----GAEVVICTPGRMIDLLTANNGRV 539

Query: 395 --------LILVIVDEQHRFGVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
                   +++   D     G + Q +K+          ++ +   P+T+   +      
Sbjct: 540 TNVRRTTYIVMDEADRMFDMGFEPQVMKIINNVRPNAQKVLFSATFPKTMESLAR----- 594

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI------EEKKESN 499
            KI  KP         ++            +V + +G   +    +I      E K E +
Sbjct: 595 -KILVKPLEITVGGRSVVAPE------IDQRVEVRDGDTKFTRLLEILGEMGEEHKDEDD 647

Query: 500 FR-----SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           FR        E  + L           A +HG    +D++  + +FKNG   +++AT+V 
Sbjct: 648 FRALIFVDRQESADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNFKNGDVPIIVATSVA 707

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV +  ++I  +A +     +H+  GR GR     +CI    P   + S   +  L
Sbjct: 708 ARGLDVKELKLVINYDAPNHMEDYVHR-AGRTGRAGNKGTCITFITPEQERFSVDIVRAL 766

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           + ++       +DLKQ  +   LG  +SG
Sbjct: 767 EASK---AFIPDDLKQMSD-SFLGKIKSG 791


>gi|313676359|ref|YP_004054355.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312943057|gb|ADR22247.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 413

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 136/359 (37%), Gaps = 35/359 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAV 325
            PT  QE AI  +LQ    KN ++   Q   G+GKT    I +   +E         +++
Sbjct: 23  EPTSIQEQAIPLLLQ----KNDIMASAQ--TGTGKTAAFAIPILQHLEKDNSNSKKIKSL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E    Y + T I   +I G + Q  +  A+         ++I T   
Sbjct: 77  ILTPTRELAIQIGESFTTYGKYTSIRNTVIFGGVNQNKQTAAIRN----GVDVLIATPGR 132

Query: 386 FQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D +         +   ++DE  R      +   +K      ++       ++L  ++ 
Sbjct: 133 LLDLMNQGFISLKDIQYFVLDEADRMLDMGFIHDIKK------VIAVLPSKRQSLFFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
               I +++ K     P K  + P++   E I++     ++  K   +   +++ K    
Sbjct: 187 MPDTIVELSRK-ILINPKKIAVTPVSSTAETIQQYLYYTNKSTKKDLLLHILKDSKMDQV 245

Query: 500 -----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +   +R     +    S A IHG  +   ++  +  FK+   ++L+AT +   G
Sbjct: 246 LLFDRTKHGADRIVKELKKKNISAAAIHGDKAQNQRQKALTQFKDKEIRVLVATDIAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           ID+     +I  +  +     +H++ GR GR  E    I L  P  +        ++  
Sbjct: 306 IDIDKLQYVINFDIPNVAETYVHRI-GRSGRAGEAGVSISLCEPEENDYLKDIEKLINQ 363


>gi|312963542|ref|ZP_07778024.1| ATP-independent RNA helicase DbpA [Pseudomonas fluorescens WH6]
 gi|311282348|gb|EFQ60947.1| ATP-independent RNA helicase DbpA [Pseudomonas fluorescens WH6]
          Length = 423

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 87/427 (20%), Positives = 169/427 (39%), Gaps = 45/427 (10%)

Query: 294 MLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQ 349
           +  I Q   GSGKT    I +   +     G QA++M P   LA Q  + I++  +    
Sbjct: 6   LDLIAQAKTGSGKTAAFGIGLLNPINPRYFGCQALVMCPTRELADQVAKEIRRLARAEDN 65

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           I V  + G +    +  +LE      AH+I+GT    Q  ++   L+L  ++        
Sbjct: 66  IKVLTLCGGVSLGPQIASLEH----GAHVIVGTPGRIQQHLRKGSLVLDGLNTLILDEAD 121

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
           + L +        + +    P  +TL+ ++   + I ++  K       + V       D
Sbjct: 122 RMLDMGFYDAIEDI-ISKTPPRRQTLLFSATYPVSIKQLASKFMRAP--QQVKAEAFHSD 178

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKK-------ESNFRSVVERFNSLHEHFTSSIAIIH 522
           + IE+    +S  ++   +   +   +           + V E  + L      ++ + H
Sbjct: 179 DQIEQRFYEISPEERMDAVTKVLAHFRPASCVAFCFTKQQVQETVDHLTAKGICAVGL-H 237

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G +   D++ V+  F N +  +L+AT V   G+D+    ++I           +H++ GR
Sbjct: 238 GDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDALDMVINVELARDSEIHIHRV-GR 296

Query: 583 VGRGEEISSCILLYHPPLSKNS------------YTRLSVLKNTEDG--------FLIAE 622
            GR  E    I L  P  +  +            + +L  LK    G          IA 
Sbjct: 297 TGRAGETGIAISLVAPSEAHRAQAIEQLQKSPLNWDQLDNLKPQSGGPLLPQMSTLCIAA 356

Query: 623 EDLKQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLEIARKDAKHILTQDPDLTSVRG 678
               + + G+ILG    ++G+P   + +  + D  + + + R  AK  L +  D   ++G
Sbjct: 357 GRKDKVRPGDILGALTGEAGIPGAQVGKIAIFDFQAFVAVERGIAKQALQRLND-GKIKG 415

Query: 679 QSIRILL 685
           +S+R+ +
Sbjct: 416 RSLRVRI 422


>gi|238927921|ref|ZP_04659681.1| DEAD/DEAH box helicase domain protein [Selenomonas flueggei ATCC
           43531]
 gi|238884254|gb|EEQ47892.1| DEAD/DEAH box helicase domain protein [Selenomonas flueggei ATCC
           43531]
          Length = 426

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 133/359 (37%), Gaps = 38/359 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE AI  +            I Q   G+GKTL  L+ + A ++  G   QA+++A
Sbjct: 24  QPTPVQEQAIPPMRAGRDV------IAQAQTGTGKTLAYLLPLLARIKPQGAAAQALVIA 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q         +   I   +I G      +++ L R       ++IGT     D
Sbjct: 78  PTRELAIQIEHVAASLAEPLGIGTTVIYGGADIERQKEKLRRS----PQLVIGTPGRLLD 133

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            ++   L        +L   DE  + G  + +           LL  A    +  + ++ 
Sbjct: 134 HVRRGTLALGRVNKVVLDEADEMLKMGFIEDV---------ETLLGAAAQDYQLALFSAT 184

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---E 497
               I ++T++     P    +         IE++ + +S G K   +C  I E+     
Sbjct: 185 MPERIVRLTKRFMT-NPAHIRLAGETVTLAAIEQVVIPVSAGDKLDRLCASINEEAPYLA 243

Query: 498 SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F +  ER  +L          +  + G ++   +  V+  F++   ++L AT +   G
Sbjct: 244 MVFCATKERTRALMMELAQRGYLVDALSGDLTQTQRSFVLRQFRSAKLQILCATDIAARG 303

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           +D+   + +   +        +H++ GR GR       I L  P   +      + LK 
Sbjct: 304 LDIEGVTHVYNYDLPPTVTDYIHRI-GRTGRAGTQGKAITLVAPHQHEKLRKMEAALKA 361


>gi|320164395|gb|EFW41294.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
           30864]
          Length = 875

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 144/402 (35%), Gaps = 63/402 (15%)

Query: 265 ILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-------- 315
           I+ ++ +  P+  Q  AI   LQ+         I     GSGKT   +I +         
Sbjct: 453 IITDLGYTEPSPIQRQAIPIGLQNRDV------IGIAQTGSGKTAAFVIPLLVWVSRIPR 506

Query: 316 ----AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                 V+ G  A+IMAP   LAQQ      K+     +    + G + +  +   L   
Sbjct: 507 RLREQTVDHGPFAIIMAPTRELAQQIEVETLKFANPMGLRTVCVIGGLSREEQAFQLRL- 565

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILV--------IVDEQHRFGVQQRL----------- 412
                 III T     D ++   L+L           D     G +  L           
Sbjct: 566 ---GCDIIIATPGRLIDILENRYLVLNRCTYIVLDEADRMIDMGFEPDLKKVLDFFPVSN 622

Query: 413 ---------------KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
                            TQK     +  +  T   +T++ T+     + ++ ++   +  
Sbjct: 623 MRPTDEPDEALDAVTYHTQKFENMDIDSIVKTRYRQTVMFTATMPPLVQRLAQQYMRKPA 682

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHE 512
           + T+      +D+V + ++++    K+   +    EE +       N +   +      E
Sbjct: 683 VVTIGSAGQTVDQVTQVVEIMTEANKRKRLLEILGEEHEPPIFIFVNQKKGCDLLAKSLE 742

Query: 513 HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                +A +HG  +   +++ +D FK+G   LL+AT V   GID+ D S++I  +     
Sbjct: 743 KLGYRVASLHGGKTQEQRQAALDGFKSGDLDLLVATDVAGRGIDIKDVSLVINYDMSKTV 802

Query: 573 LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
               H++ GR GR  +    I       +   Y    +L N+
Sbjct: 803 QEYTHRI-GRTGRAGKKGLAITFLTNEDTGVYYELKQILINS 843


>gi|307545782|ref|YP_003898261.1| ATP-dependent RNA helicase DeaD [Halomonas elongata DSM 2581]
 gi|307217806|emb|CBV43076.1| K05592 ATP-dependent RNA helicase DeaD [Halomonas elongata DSM
           2581]
          Length = 555

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 124/346 (35%), Gaps = 36/346 (10%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
             + +  P+  Q   I  +L+          + Q   G+GKT    + + + +E      
Sbjct: 25  ETLGYETPSPIQAQTIPALLEGRD------MLGQAQTGTGKTAAFALPILSRLELDRREP 78

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LAQQ      KY QN   + V I+ G M    + +AL R     A +++G
Sbjct: 79  QVLVLAPTRELAQQVAASFSKYGQNLKGLEVAILCGGMEYRDQMQALRR----GAQVVVG 134

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPI 431
           T     D +    L        +L   DE  R G    +K            +  +AT  
Sbjct: 135 TPGRIIDHLDRGSLKLGGLSALVLDEADEMLRMGFIDDVKRVVADTPVDAQRVFFSATLP 194

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                +V   L +     I  + +    I+   + I+   ++    +++  E   A  + 
Sbjct: 195 TEIERIVNQYLVEPVKVTIESRASSGDNIEQRRVRIDGGAKLEALARILEVEPVDAAIVF 254

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         R+              ++A + G +    +E  +   K G   +LIAT 
Sbjct: 255 VRT--------RAACTTLMEQLSARGLNVASLSGDLDQSLRERTITRLKRGKIDVLIATD 306

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           V   G+DV   + +I  +      A  H++ GR GR       I  
Sbjct: 307 VAARGLDVPRITHVINYDLPQDAEAYTHRI-GRTGRAGRAGVAITF 351


>gi|242371572|ref|ZP_04817146.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
 gi|242350724|gb|EES42325.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
          Length = 525

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/377 (19%), Positives = 143/377 (37%), Gaps = 36/377 (9%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +    ++++   +    + +  K  Q +       PT  Q+ +I   L+          +
Sbjct: 6   LRNKHLKRRIILQNFKELGISDKTVQTLESMGFKEPTPIQKDSIPYALKG------DDIL 59

Query: 298 LQGDVGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            Q   G+GKT    I +   V  + G Q++I+AP   LA Q  E ++++++  ++ V  +
Sbjct: 60  GQAQTGTGKTGAFGIPLIEKVVGQEGVQSLILAPTRELAMQVAEQLREFSKGQRVQVVTV 119

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFG 407
            G MP   + KAL+R       I++GT     D +          + LIL   DE    G
Sbjct: 120 FGGMPIDRQIKALKR----GPQIVVGTPGRVIDHLNRRTLKTHDIHTLILDEADEMMNMG 175

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               ++                   +T++ ++     I ++ ++   + P     +    
Sbjct: 176 FIDDMRFIMDKIPADQ--------RQTMLFSATMPKAIQELVQQFM-KTPKIIKTMNNEM 226

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVERFNSLHEHFTSS---IAII 521
            D  IE    ++ E +K       ++  +      F     R + L     S       +
Sbjct: 227 SDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGL 286

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG ++   +  V+  FKN    +L+AT V   G+D+   S +   +      +  H++ G
Sbjct: 287 HGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRI-G 345

Query: 582 RVGRGEEISSCILLYHP 598
           R GR  +    +   +P
Sbjct: 346 RTGRAGKEGIAVTFVNP 362


>gi|261194749|ref|XP_002623779.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis SLH14081]
 gi|239588317|gb|EEQ70960.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis SLH14081]
          Length = 1197

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 97/516 (18%), Positives = 178/516 (34%), Gaps = 76/516 (14%)

Query: 132 LKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
             ++  +  P  IF +  DV+   I+                   EA   L      I  
Sbjct: 466 NFSKFKLPKPEAIFGDEDDVDLKAIDP------------------EADDFLA-----ITS 502

Query: 192 DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELL--AGQIALLLMRKQFKK 249
              +KK  P I      ++     KDF         L  +E+     ++  + +R     
Sbjct: 503 KARKKKDLPPINH--EKMNYEPFRKDFYTEPVDLSELTDEEVAALRLELDGIKVRGVDVP 560

Query: 250 EIGIPINVEGKIAQKI--LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           +     +  G   Q +  +R + +  PT  Q  AI  I+           I     GSGK
Sbjct: 561 KPVQKWSQCGLGVQTLDVIRKLNYENPTSIQSQAIPAIMSGRDV------IGVAKTGSGK 614

Query: 307 TLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           T+  L+ M   +          G   +IM P   LA Q ++  K + +   +      G 
Sbjct: 615 TIAFLLPMFRHIMDQRPLENMEGPIGLIMTPTRELATQIHKECKPFLKALSLRAVCAYGG 674

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQ 410
            P   +   L+R     A I++ T     D +           ++  V++DE  R     
Sbjct: 675 APIKDQIAELKR----GAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMG 730

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
                        +L    P  +T++ ++    ++  +  K    KP++ ++   + +  
Sbjct: 731 FEPQVM------RILGNVRPQRQTVLFSATFPRNMEALARKTLT-KPVEIIVGGRSVVAP 783

Query: 471 VIERLKVVLSEGKKAYWICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---I 518
            I ++  V +E  K   +   +         E+ +   F    E  + L           
Sbjct: 784 EITQVVEVRNEDTKFVRLLALLGDLYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPC 843

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG    +D++S +D FK G   +LIAT+V   G+DV    +++  +A +     +H+
Sbjct: 844 MSIHGGKDQVDRDSTIDDFKAGVFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR 903

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
             GR GR     + +        + S      LK +
Sbjct: 904 -AGRTGRAGNTGTAVTFLTEDQERYSVDISKALKQS 938


>gi|146311795|ref|YP_001176869.1| ATP-dependent RNA helicase DbpA [Enterobacter sp. 638]
 gi|145318671|gb|ABP60818.1| ATP-dependent RNA helicase DbpA [Enterobacter sp. 638]
          Length = 457

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/454 (17%), Positives = 173/454 (38%), Gaps = 50/454 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL+    +      +Q   GSGKT    + +   ++AG   
Sbjct: 18  LNELGYLAMTPVQAAALPAILEGRDVR------VQAKTGSGKTAAFGLGLLQQIDAGLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHP----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  + +        R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-QTLVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   + P    I  ++ +   IE+     S+  K   +   + + +    
Sbjct: 187 WPEAIAAISGR-VQQNPATIEIDSVDALPS-IEQQFYETSQKGKIPLLQKLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +      E    S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCEALEEAGQSALALHGDLEQRDRDQTLIRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--------T 606
           +D+    +++           +H++ GR  R       I L  P  ++ +          
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISLCAPEEAQRANILSEMLQLK 363

Query: 607 RLSVLKNTEDGFLIAEEDL-----------KQRKEGEILG--IKQSGMPKFLIAQPELHD 653
              +   +  G +  + ++           K R  G++LG      G     I +  +H 
Sbjct: 364 LNWMSAPSNVGIVPLKAEMVTLCIDGGKKAKMR-PGDVLGALTGDMGFDGADIGKIAVHP 422

Query: 654 S--LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +   + + +  A  +  Q  +   ++G++ R+ L
Sbjct: 423 AHVYVAVRQSVANKVWKQLQN-GKIKGKTCRVRL 455


>gi|116199007|ref|XP_001225315.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51]
 gi|118573324|sp|Q2GWJ5|FAL1_CHAGB RecName: Full=ATP-dependent RNA helicase FAL1
 gi|88178938|gb|EAQ86406.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51]
          Length = 394

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 49  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 102

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+       HI+ GT     D
Sbjct: 103 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HIVSGTPGRVAD 158

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 159 MIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLP---------PATQVVVVSAT 209

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 210 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQ 268

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 269 AVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWAR 328

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 329 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTSE 373


>gi|145323964|ref|NP_001077571.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|332191920|gb|AEE30041.1| DEAD-box ATP-dependent RNA helicase 42 [Arabidopsis thaliana]
          Length = 828

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 80/397 (20%), Positives = 157/397 (39%), Gaps = 45/397 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           ++ + +  P   Q  A+  I+           I     GSGKTL  ++ M   ++     
Sbjct: 206 MKKLNYEKPMPIQTQALPIIMSGRD------CIGVAKTGSGKTLGFVLPMLRHIKDQPPV 259

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G   ++MAP   L QQ +  I+K+++   I    + G    A +   L+R      
Sbjct: 260 EAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTE--- 316

Query: 377 HIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            I++ T     D +           ++  +++DE  R                  ++   
Sbjct: 317 -IVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQIT------RIIQNI 369

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  +T++ ++     +  +  K    KP++  +   + +++ I +L  V  E  +   +
Sbjct: 370 RPERQTVLFSATFPRQVETLARKVLN-KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 428

Query: 489 CPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGT 541
              + E  E      F    E+ ++L+     S      +HG     D+ES +  FKN  
Sbjct: 429 LELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDV 488

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           C LLIAT+V   G+DV +  +++  +A +     +H++ GR GR       +       +
Sbjct: 489 CNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRV-GRTGRAGRKGCAVTFISEDDA 547

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           K +   +  L+ +E       +DLK   +G ++ +KQ
Sbjct: 548 KYAPDLVKALELSE---QPVPDDLKALADGFMVKVKQ 581


>gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 466

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 80/374 (21%), Positives = 134/374 (35%), Gaps = 45/374 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q  AI  +++          I     G+GKT   ++ +   + A          +
Sbjct: 41  TPTPIQARAIPAVMKGHD------LIGLAQTGTGKTAAFVLPLVHQLLAENKQAPGRSCR 94

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  E +K YT +T++   ++ G +    + KAL R       I++ T 
Sbjct: 95  ALILAPTRELAAQIEEQVKAYTAHTKLTSTVVFGGVKAGPQIKALAR----GVDILVATP 150

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT--PI 431
               D +   K        +IL   D+    G     R  L         L+ +AT  P 
Sbjct: 151 GRLLDHLGERKARLDLTRFVILDEADQMLDLGFIPAIRKLLRMVGEERQTLMFSATMAPA 210

Query: 432 PRTLVLTSLGDIDISKIT--EKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWI 488
            R L    L   +   +T   KP  R   K      + + D +I+ +      GK+A   
Sbjct: 211 IRQLADDFLDHPETVAVTPPSKPVERIDQKVFYTEASAKPDALIDLMAPE--AGKRAIIF 268

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +R       +      IHG  S   +   +D+FK+G   +L+AT
Sbjct: 269 TRT---------KYGADRVAKRLVKYGHKANAIHGDKSQNQRTRALDAFKSGEAPVLVAT 319

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            +   GIDV    +++     +     +H++ GR  R       + L  P          
Sbjct: 320 DIAARGIDVDGVDLVVNYELPNVAENYVHRI-GRTARAGASGRAVALCAPDERVMLKDIE 378

Query: 609 SVLKNTEDGFLIAE 622
             +  T  G   A 
Sbjct: 379 KTMGVTIQGLNDAP 392


>gi|99081650|ref|YP_613804.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
 gi|99037930|gb|ABF64542.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
          Length = 493

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 136/354 (38%), Gaps = 46/354 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA------AAVEAGGQAV 325
           SPT  Q  AI   L+          +     G+GKT    + M        A     +++
Sbjct: 24  SPTPIQAGAIPAALEGRDV------LGIAQTGTGKTASFTLPMITRLARGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y ++ ++   ++ G +    +  A++R       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDAAIDR----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     ++VDE  R      +   ++       + + TP   +TL  ++
Sbjct: 134 LLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIER-------IFSLTPFTRQTLFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL------SEGKKAYWICPQIE 493
               +I +IT       P +  I       E IE+  V+        EG +   +  ++ 
Sbjct: 187 TMAPEIERITNTFLSG-PERVEIARQATTSENIEQAVVMFKASRKDREGSEKRRVLRELI 245

Query: 494 EKK---------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            ++           N ++ V+      + +    A IHG +    +   +D F++GT K+
Sbjct: 246 NQEGEAVQNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLDGFRDGTLKI 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           L+A+ V   G+DV   S +   +        +H++ GR GR       I L  P
Sbjct: 306 LVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRI-GRTGRAGRDGKAITLCSP 358


>gi|261212516|ref|ZP_05926801.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
 gi|260838447|gb|EEX65103.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
          Length = 422

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 125/355 (35%), Gaps = 29/355 (8%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQ-------- 323
           PT  Q+ AI  +LQ          +     G+GKT    + +    ++   Q        
Sbjct: 29  PTLIQQQAIPHVLQGRDV------LAGAQTGTGKTAAFGLPLIQRFIDQPWQREENSKEI 82

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   LAQQ  + ++ Y + T + +  + G      +   L     G   I+I T
Sbjct: 83  RALVLVPTRELAQQVLDSLQAYAKGTDLKIVAVYGGTSMKVQLNHLR----GGVDILIAT 138

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D      L L  V E        R+           +L   +P+ +TL  ++  D
Sbjct: 139 PGRLLDHAHVKSLFLGKV-EVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFD 197

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
             I  +  +   R P +  + P N   E ++++   + + +K   +   I  K       
Sbjct: 198 SKIKAVAYR-IMRDPTEVQVTPSNSTAETVQQMVYPVDKKRKRELLAYLIGSKNWQQVLV 256

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               R   +      +        I+G  S   ++  +D FK G  + LIAT V   G+D
Sbjct: 257 FTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLD 316

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           +     ++  +        +H++ GR GR       + L     +        +L
Sbjct: 317 IAQLEQVVNYDMPFKAEDYVHRI-GRTGRAGLAGLAVSLLSHDETPQLEAIERLL 370


>gi|121608317|ref|YP_996124.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121552957|gb|ABM57106.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 486

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/379 (18%), Positives = 130/379 (34%), Gaps = 42/379 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-----------G 322
           T  Q  AI  +L           +     G+GKT    + +   +               
Sbjct: 27  TPIQAQAIPVVLTGQDV------MGAAQTGTGKTAAFSLPLLQRLLRHESSSASPARHPV 80

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LA Q    I  Y ++T++   ++ G +    +   L++       +++ T
Sbjct: 81  RALVLLPTRELADQVARQIALYARHTKLRSTVVFGGIDMKPQTLELKK----GVEVLVAT 136

Query: 383 HALFQDSIQYYKLILVIV-----DEQHRFG-----VQQRLKLTQKATAPHVLLMTAT--P 430
                D I+    +L  V     DE  R          +  L+        LL +AT  P
Sbjct: 137 PGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKERTTLLFSATFSP 196

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             R L  + L      ++    A    ++      N  D+     +V+ + G K  +I  
Sbjct: 197 EIRRLASSYLHQPVTIEVARPNATAATVEQRFYSANDDDKRRAIHQVLRTRGLKQAFIFV 256

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   N +    R     E      A +HG  S  ++   + +FK+G   LL+ T V
Sbjct: 257 --------NSKLGCARLARSLEREGLRTAALHGDRSQDERLKALQAFKSGDVDLLVCTDV 308

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D   +   +        +H++ GR GR       + L     ++       +
Sbjct: 309 AARGLDIKDVPAVFNFDVPFNAEDYVHRI-GRTGRAGASGLAVTLVSGSDARLVADIEKL 367

Query: 611 LKNTEDGFLIAEEDLKQRK 629
           +    D   I  ++ + R 
Sbjct: 368 IGKKTDLEAIEYDEDRPRG 386


>gi|167769379|ref|ZP_02441432.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM
           17241]
 gi|167668347|gb|EDS12477.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM
           17241]
          Length = 439

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 126/346 (36%), Gaps = 38/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            P+  Q+ AI   L           +     G+GKT    I +   ++            
Sbjct: 41  EPSAIQQQAIPPALAGHDV------LGCAQTGTGKTAAFAIPILQRLDTQCASIKTPCVI 94

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LA Q  +  + Y +  ++   ++ G +PQ  +   L R       I++ T
Sbjct: 95  RALVLTPTRELAIQIKDSFQSYGRYMRLRSTVVFGGVPQTPQVDELRR----GVDILVAT 150

Query: 383 HALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D I         + + ++DE  R      +   +       ++       +TL  
Sbjct: 151 PGRLNDLIGQGIIDLSSVSVFVLDEADRMLDMGFIHDVE------RVINHLPNKRQTLFF 204

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE--- 494
           ++     I  + ++     P+K  + P++   E IE+    + +  K   +   +E+   
Sbjct: 205 SATMPKAIMHLCDR-ILTDPVKVAVTPVSSPVEAIEQRLYFVDKPNKRRLLIYLLEDVSI 263

Query: 495 ---KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                 +  +   +R              IHG  S   ++  + +FKNG  ++L+AT + 
Sbjct: 264 VSALVFTFTKHGADRVARELVKAGIKAQAIHGDKSQGARQRALSAFKNGDIRVLVATDIA 323

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             GID+ + S +   +  +     +H++ GR GR       I    
Sbjct: 324 ARGIDIDELSHVFNYDLPNIPETYVHRI-GRTGRAGLGGIAISFCS 368


>gi|119357064|ref|YP_911708.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354413|gb|ABL65284.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
           DSM 266]
          Length = 418

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 126/356 (35%), Gaps = 27/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +LQ +        +     G+GKT    I +   +            +
Sbjct: 23  TPTPIQAEAIPIVLQGID------LLGCAQTGTGKTAAFAIPILQILSENKLVDKSRKIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           ++I+ P   LA Q  E  K Y ++T +   +I G + Q  +  +L R       I++ T 
Sbjct: 77  SLIVTPTRELAIQIGESFKAYGRHTGLTNTVIFGGVNQNPQTASLLR----GVDILVATP 132

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    L L  V E        R+           +L       ++L  ++    
Sbjct: 133 GRLLDLMNQGHLHLRDV-EILVLDEADRMLDMGFIHDVKKILAHLPKKKQSLFFSATMPP 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK------AYWICPQIEEKKE 497
           +I K+        P K  + P++   E+I +    + +G K                   
Sbjct: 192 EIVKLAAT-ILHNPSKVSVTPVSSTVEIINQAIYFVDKGNKNSLLLDLLKDKNIKTSLVF 250

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   ++          +   IHG  +   ++  +++FK  T ++L+AT +   GIDV
Sbjct: 251 TRTKHGADKVVKYLLKHHITAEAIHGNKAQNARQRALNNFKAQTTRVLVATDIAARGIDV 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            D   +I     +     +H++ GR GR     + +        +       ++  
Sbjct: 311 DDLEYVINFEMPNIPETYVHRI-GRTGRAGAKGTALSFCDAEEKEYLRDIEKLIAK 365


>gi|254361250|ref|ZP_04977393.1| superfamily II helicase [Mannheimia haemolytica PHL213]
 gi|110735365|gb|ABG89253.1| ATP-dependent RNA helicase [Mannheimia haemolytica]
 gi|153092746|gb|EDN73789.1| superfamily II helicase [Mannheimia haemolytica PHL213]
          Length = 602

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 82/420 (19%), Positives = 156/420 (37%), Gaps = 52/420 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+  I  +L           +     GSGKT    + + A ++      Q ++MAP
Sbjct: 29  PSPIQQECIPHLLAGRDV------LGMAQTGSGKTAAFSLPLLAQIDPTQRHPQMLVMAP 82

Query: 330 IGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q  +  +++ +N   I V  + G      R     R     + +++GT     D
Sbjct: 83  TRELAIQVADACEQFAKNMKGIRVVTVYGG----QRYDIQLRALKQGSQVVVGTPGRILD 138

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE  R G    +           ++       +T + ++ 
Sbjct: 139 HIRRGTLDLSELKFIVLDEADEMLRMGFIDDV---------ETVMAELPETHQTALFSAT 189

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
               I +IT +   + P +  I    R    IE+   +++  +K   +   +E ++    
Sbjct: 190 MPEPIRRITRRFM-KDPQEVKIKATERSAPDIEQSYWLVNGFRKNDALLRFLEVEEFDAA 248

Query: 501 RSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                          L E      A ++G M+   +E  +D  ++G   +L+AT V   G
Sbjct: 249 IIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLRSGRLDILVATDVAARG 308

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           ID+   S++I  +      + +H++ GR GR       +L   P   +      +++K  
Sbjct: 309 IDIERISLVINYDIPLEEESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIENLIKKP 367

Query: 615 EDGFLIAEED--LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            +   I   +  +++R+E              +  Q E HD  LE  R+  + + T D D
Sbjct: 368 INEVAIPNHEILMEKRREK---------FKARISKQLEHHD--LEKYRELLEDLFTADQD 416


>gi|54301892|ref|YP_131885.1| ATP-dependent RNA helicase DbpA [Photobacterium profundum SS9]
 gi|46915312|emb|CAG22085.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
           SS9]
          Length = 462

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/455 (18%), Positives = 168/455 (36%), Gaps = 53/455 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ +   T  Q  ++  IL           I QG  GSGKT    + +   +      
Sbjct: 19  LTSLGYESMTPIQALSLPHILAGEDV------IAQGKTGSGKTAAFGLGLLEKLNVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + I+K  +    I V  + G MP   +  +LE      AHII+
Sbjct: 73  VQSLVLCPTRELADQVAKEIRKLARTIHNIKVLTLCGGMPFGPQIGSLEH----GAHIIV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    ++ ++   L L  + E        R+       +   ++  A    +TL+ ++ 
Sbjct: 129 GTPGRIEEHVRKGTLNLDDL-EILILDEADRMLEMGFQDSLDEIIDAAPQRRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
               I  + ++    KP+   +      +  I++    +   ++       +  K     
Sbjct: 188 YPPQIKSVADR-IMHKPVMAKV-ESTHDESTIQQHFYKVDGNEQRLTALRLLLLKHRPES 245

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  R   E  + L ++  SSIA+ HG +   +++  +  F N +  +L+AT V  
Sbjct: 246 TVVFCNTKREAQEVSDDLVDYGFSSIAL-HGDLEQRERDQALVLFANKSTSVLVATDVAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+     +I  +        +H++ GR GR         L               L 
Sbjct: 305 RGLDIDSLDAVINYHLARDTEVHVHRI-GRTGRAGSKGIACSLISDKEHYKVAMLEDYLD 363

Query: 613 NTEDG-------------FLIAEEDLKQRK-------EGEILG--IKQSGMPKFLIAQPE 650
               G             F  A   L+           G+ILG    +SG+    + + +
Sbjct: 364 RAISGEPLPSMDLLDQPTFRPAMTTLQIDGGKRQKIRPGDILGALTGESGIAGAQVGKIQ 423

Query: 651 LHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           + D  + + +  +  +  + +  D   ++G+S R+
Sbjct: 424 IFDNFAYVAVKSESVRAAMKKLED-GKLKGRSFRV 457


>gi|313202811|ref|YP_004041468.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312442127|gb|ADQ78483.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 451

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 133/360 (36%), Gaps = 38/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  QE +I  +L+          +     G+GKT    I +   ++            
Sbjct: 23  QPTPIQEISIPIVLKGHD------LLGCAQTGTGKTAAFAIPILQLLQLNKGAERAPRKI 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E    Y +   +   +I G +PQ  +  AL+        I+I T
Sbjct: 77  KALIVTPTRELAIQIGESFAAYGRFMNLRHTVIFGGVPQGAQVGALKM----GVDILIAT 132

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      ++  +L + ++DE  R      +   +K       L+   P  R  + 
Sbjct: 133 PGRLLDLQTQGYVKLNELSIFVLDEADRMLDMGFIHDVKK-------LIKIIPAKRQSLF 185

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
            S    +  ++        P +  + P++   E I++    +    K   +   +++K  
Sbjct: 186 FSATMPESIRVLAGSILTNPEEVAVTPVSTTAETIQQEMYFVDAVNKKDLLIHLLQDKSI 245

Query: 497 -----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                 +  +   ++   L          IHG  S   +++ + +FK+ T ++L+AT + 
Sbjct: 246 KTALVFTRTKHGADKVQRLLTKARIKAEAIHGNKSQNARQNALRNFKDRTTRVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ D +++I     +     +H++ GR GR       +        +       ++
Sbjct: 306 ARGIDIDDLNLVINYEIPNIPETYVHRI-GRTGRAGLDGKAVSFCDAEEHEYLRDIQKLI 364


>gi|262403813|ref|ZP_06080371.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
 gi|262350317|gb|EEY99452.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
          Length = 421

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 125/355 (35%), Gaps = 29/355 (8%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q+ AI  +LQ          +     G+GKT    + +                  
Sbjct: 29  PTPIQQQAIPYVLQGKDV------LAGAQTGTGKTAAFGLPLIQRFIEQPWVREENSKEI 82

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LAQQ  + ++ Y + T++ +  + G      +   L     G   I+I T
Sbjct: 83  RALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQLNHLR----GGVDILIAT 138

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D      L L  V E        R+           +L   +P+ +TL  ++  D
Sbjct: 139 PGRLLDHAHVKSLFLGKV-EVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFD 197

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
             I  +  +   R P +  + P N   E ++++   + + +K   +   I  K       
Sbjct: 198 SKIKAVAYR-IMRDPAEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLV 256

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               R   +      +        I+G  S   ++  +D FK G  + LIAT V   G+D
Sbjct: 257 FTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLD 316

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           +     ++  +        +H++ GR GR   +   + L     +        +L
Sbjct: 317 IAQLEQVVNYDMPFKAEDYVHRI-GRTGRAGLVGLAVSLLSHDETPQLEAIERLL 370


>gi|225719408|gb|ACO15550.1| Eukaryotic initiation factor 4A-III [Caligus clemensi]
          Length = 403

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 132/369 (35%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ +IK IL+          I Q   G+GKT    I++  +++      Q ++++
Sbjct: 52  KPSAIQQRSIKPILKGRDV------IAQAQSGTGKTATFSISILQSIDTSLRETQCLVLS 105

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 106 PTRELAVQIQKVLLALGDYMNVQCHACIGGTNLGEDIRKLDYGQ----HVVSGTPGRVYD 161

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++            + L++AT     L +T
Sbjct: 162 MIRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQICLISATLPHEILEMT 221

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 222 SKFMADPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 274

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG +   +++ +M  F++G  ++LI T V   GID
Sbjct: 275 FCNTKRKVDWLTEKMREANFTVSSMHGDVPQKERDDIMKEFRSGQSRVLITTDVWARGID 334

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S++I  +  +     +H++ GR GR       I        +             D
Sbjct: 335 VQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKNDDIRILRDIEQYYSTQID 393

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 394 EMPMNVADL 402


>gi|126729580|ref|ZP_01745393.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
 gi|126709699|gb|EBA08752.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
          Length = 469

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 138/369 (37%), Gaps = 46/369 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+          +     G+GKT    + M   +  G       +++
Sbjct: 24  TPTPIQAGAIPHALEGKDV------LGIAQTGTGKTASFTLPMIHKLARGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y+++ ++   ++ G +    +   +++       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYSKHVKLTKALLIGGVSFKEQDVLIDK----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     ++VDE  R      +   ++       + + TP   +TL  ++
Sbjct: 134 LLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIER-------IFSLTPFTRQTLFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-------EGKKAYWICPQI 492
               +I +IT       P +  +       E I +  VV +         +K   +   I
Sbjct: 187 TMAPEIERITNTFL-SAPARIEVARQATASETITQGAVVFTPSRRDRESSEKRAVLRALI 245

Query: 493 EEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           + + E         N +  V+        +  + A IHG +    +   +D F++G+ +L
Sbjct: 246 DAEGEACSNAIIFCNRKVDVDIVAKSLTKYGYNAAPIHGDLDQSQRTRTLDGFRDGSVRL 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIA+ V   G+D+   + +   +        +H++ GR GR         +  P   K  
Sbjct: 306 LIASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRI-GRTGRAGRSGKAYTICTPRDEKYF 364

Query: 605 YTRLSVLKN 613
                +L+ 
Sbjct: 365 DAVEKLLQK 373


>gi|282917430|ref|ZP_06325183.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus D139]
 gi|282318632|gb|EFB48989.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus D139]
          Length = 506

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 135/350 (38%), Gaps = 37/350 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L ++ F  PT  Q+ +I   LQ +        + Q   G+GKT    I +   V  + G 
Sbjct: 17  LESMGFKEPTPIQKDSIPYALQGID------ILGQAQTGTGKTGAFGIPLIEKVVGKQGV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q++I+AP   LA Q  E ++++++   + V  + G MP   + KAL++       I++GT
Sbjct: 71  QSLILAPTRELAMQVAERLREFSRGQGVQVVTVFGGMPIERQIKALKK----GPQIVVGT 126

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +          + LIL   DE    G    ++                   +T
Sbjct: 127 PGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ--------RQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I  + ++   + P     +     D  IE    ++ E +K       ++ 
Sbjct: 179 MLFSATMPKAIQALVQQFM-KSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +      F     R + L     S       +HG ++   +  V+  FKN    +L+AT
Sbjct: 238 HQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|238019582|ref|ZP_04600008.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748]
 gi|237864281|gb|EEP65571.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748]
          Length = 432

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 128/352 (36%), Gaps = 22/352 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE AI  + +          I +   G+GKTL  L+ +   V       Q +I+A
Sbjct: 24  EPTPIQEQAIPVVFKG------NDVIAKAQTGTGKTLAFLLPILQRVHTDVHQEQVLIIA 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L +Q  +  K+      + +  + G      + + L R    +  +I+GT     D
Sbjct: 78  PTRELVKQISDEAKEIGSILNVDILPLIGGKTIEAQLQQLGR----RPQVILGTPGRLLD 133

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +   L L  +         Q L +       +  L++ T   R L+L S    D  + 
Sbjct: 134 HAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIEN--LISQTDANRQLLLFSATIPDKIRN 191

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVE 505
             K    KP        +   E I++   +++  +K   +   IEE        F +  E
Sbjct: 192 LAKAYMSKPASVTAEGKHVTLESIDQRVYMMNTEEKTQRLIKMIEEDNPFLAIVFCNKRE 251

Query: 506 RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
               L    T+   +IA +HG ++   +  ++  F     ++L+AT +   GID+   + 
Sbjct: 252 GAVRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITH 311

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +   +        +H++ GR GR       +    P            ++ T
Sbjct: 312 VYNYDVPRDVDYYIHRI-GRTGRAGNSGVAVTFATPQDESWLRRIERAIQAT 362


>gi|196231991|ref|ZP_03130847.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196224113|gb|EDY18627.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 405

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 144/369 (39%), Gaps = 38/369 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q  A   IL        M+   Q   G+GKT    + +   +++ G  +A+I+ P
Sbjct: 23  DPTPIQLRAFPIIL----SGRDMMGSAQ--TGTGKTAAFALPLLTKLKSHGDLRALILEP 76

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q     + Y++   + V ++ G +    +R  L++     A +++ T     D 
Sbjct: 77  TRELAAQVETAFRDYSRFMDVQVGLVHGGVGFGSQRSMLQK----GADVLVATPGRLLDF 132

Query: 390 IQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT--PIPRTLVL 437
           ++           L+L  VD     G   Q R  + +       L  +AT  P   T+  
Sbjct: 133 LEDGTANLKNIQYLVLDEVDRMLDMGFLPQVRRIVDRVPKERQTLFFSATLPPELETMTK 192

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
             L D +  +I  + +  + +   + P+ + D+  + L  +L   K    I         
Sbjct: 193 WLLKDPEQVEIGARRSPAETVTHALYPVAK-DQKFDLLIALLERTKFDSAIIFT------ 245

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            + + + ++     +    S+A++H   +  ++E  +  FK+G  ++++AT +   G+D+
Sbjct: 246 -STKIMADKVAHRLKDLKHSVAVLHSNRTQREREDALAGFKSGKYEVMVATDIAARGLDI 304

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              S +I  +        +H++ GR GR         ++      +  +    +     G
Sbjct: 305 AGVSHVINYDVPQHPEDYVHRI-GRTGRALLTGDAFTIFTAEELDHVRSIERFI-----G 358

Query: 618 FLIAEEDLK 626
             I  + L+
Sbjct: 359 AKITRQKLE 367


>gi|192361806|ref|YP_001982445.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107]
 gi|190687971|gb|ACE85649.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107]
          Length = 625

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/360 (20%), Positives = 130/360 (36%), Gaps = 41/360 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q +AI  +L           +     G+GKT    + + + ++      Q +++AP
Sbjct: 52  PSPIQAAAIPILLDG------GDILGMAQTGTGKTAAFALPLLSKLDLSQNEPQILVLAP 105

Query: 330 IGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q  E  +KY        V  I G      + + L+R      H+++GT     D
Sbjct: 106 TRELAIQVAEAFQKYAADMPGFHVLPIYGGQDMTSQLRQLKR----GVHVVVGTPGRVMD 161

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVLT 438
            ++           L+L   DE  R G    ++             L +AT       + 
Sbjct: 162 HLRRGSLNLNNLKSLVLDEADEMLRMGFIDDVEWILEHTPETRQTALFSATMPREIRKVA 221

Query: 439 SLGDIDISKIT-----EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
                D  +I      +     + +  ++   N++D +   L+V   +G   +       
Sbjct: 222 DNYLRDAKEIKIASTQQTGDNIEQVYWMVSGTNKLDALTRILEVEPFDGMIIFV------ 275

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                   + VE    L E    S A ++G M+   +E  ++  K     ++IAT V   
Sbjct: 276 ----RTKTATVELAEKL-EARGYSAAPLNGDMNQQLRERTIERLKTSKLDIVIATDVAAR 330

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GIDV   S ++  +  +   A +H++ GR GR       IL   P   +  YT     + 
Sbjct: 331 GIDVERVSHVVNYDIPYDSEAYVHRI-GRTGRAGRSGKAILFVAPREKRLLYTIEKATRK 389


>gi|326940167|gb|AEA16063.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 455

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 26  TPIQEKAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPT 79

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 80  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 135

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 136 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 194

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 195 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 253

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 254 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 313

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 314 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 360


>gi|302338831|ref|YP_003804037.1| DEAD/DEAH box helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301636016|gb|ADK81443.1| DEAD/DEAH box helicase domain protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 542

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 123/337 (36%), Gaps = 21/337 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            PT  Q   I  +L      +    I Q   G+GKT    + +   V+      QA+++ 
Sbjct: 27  EPTTIQARTIPVMLH-----SDANIIAQAQTGTGKTAAFGLPLLDLVDPVSRTVQALVLV 81

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I  +  + ++ +  I G      + + L++       I++GT     D
Sbjct: 82  PTRELAIQVSEEINSFRGSKKVRIVPIYGGQSIDQQLRRLKQ----GVQIVVGTPGRIID 137

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +    L L  +         + L +        +L  T  P  RTL+ ++     I K+
Sbjct: 138 HLNRKTLNLTAISHLILDEADEMLNMGFIDEMEEILKHT-NPDKRTLLFSATMPDKIKKL 196

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRS 502
                    +   +        + E++   +    K   +C  I+ +           ++
Sbjct: 197 ANDYMEGYEL-IAVEKEQLTTNLTEQIYFEVKASDKFEALCRIIDIEDSFYGLVFCRTKN 255

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            V+   +         A +HG +S   +E  +  FK     +L+AT V   GIDV + + 
Sbjct: 256 DVDTVVNHLLDRGYDAAPLHGDISQAQRERTLGKFKRQNINILVATDVAARGIDVNNLTH 315

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +I  +      A +H++ GR GR     + I    P 
Sbjct: 316 VINYSLPQDPEAYVHRI-GRTGRAGNEGTAITFITPS 351


>gi|224064557|ref|XP_002301515.1| predicted protein [Populus trichocarpa]
 gi|222843241|gb|EEE80788.1| predicted protein [Populus trichocarpa]
          Length = 807

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 140/384 (36%), Gaps = 45/384 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            PT  Q  A+  +L           I     GSGKT   ++ M   +        E G  
Sbjct: 247 KPTPIQCQALPIVLSG------SDIIGMAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPI 300

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            V+ AP   LA Q Y   KK++++  I V  + G M +  + K L+        I+I T 
Sbjct: 301 GVVCAPTRELAHQIYLETKKFSKSHGIRVSAVYGGMSKLDQFKELKAGCE----IVIATP 356

Query: 384 ALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++   L +      ++DE  R          +             P  +TL+ +
Sbjct: 357 GRLIDMLKMKALNMSRATYLVLDEADRMFDLGFEPQIRSIVGQIR------PDRQTLLFS 410

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICP----QIE 493
           +     I K+  +     P++  +  + R +E I ++  V+    +K  W+       I+
Sbjct: 411 ATMPRKIEKLA-REILTDPVRVTVGEVGRANEDITQVVQVIPSDAEKLPWLIEKLPGMID 469

Query: 494 EKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E     F S     + +          +A +HG      +  ++  FK+G   +L+AT V
Sbjct: 470 EGDVLVFASKKATVDDIESQLAQKAFKVAALHGDKDQASRMEILQKFKSGVYHVLVATDV 529

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS-CILLYHPPLSKNSYTRLS 609
              G+D+     ++  +        +H++ GR GR  +       L     ++ +   ++
Sbjct: 530 AARGLDIKSIKSVVNFDIAREMDVHVHRI-GRTGRAGDKDGIAYTLITQKEARFAGELVN 588

Query: 610 VLKNTEDG-----FLIAEEDLKQR 628
            L             +A +D + R
Sbjct: 589 SLIAAGQNVSVELMDLAMKDGRFR 612


>gi|218231258|ref|YP_002367146.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228939601|ref|ZP_04102185.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228972459|ref|ZP_04133068.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979080|ref|ZP_04139429.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407]
 gi|218159215|gb|ACK59207.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228780666|gb|EEM28884.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407]
 gi|228787281|gb|EEM35251.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820093|gb|EEM66134.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 458

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   ++   +  QA+I+AP 
Sbjct: 29  TPIQEKAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 ASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|24644483|ref|NP_731032.1| Rm62, isoform E [Drosophila melanogaster]
 gi|320542448|ref|NP_001189182.1| Rm62, isoform I [Drosophila melanogaster]
 gi|10727150|gb|AAF51927.2| Rm62, isoform E [Drosophila melanogaster]
 gi|257286223|gb|ACV53058.1| LP18603p [Drosophila melanogaster]
 gi|318068719|gb|ADV37273.1| Rm62, isoform I [Drosophila melanogaster]
          Length = 578

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 134/378 (35%), Gaps = 41/378 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       +           +     GSGKTL  ++     +          G  
Sbjct: 162 APTAIQAQGWPIAMSG------SNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPI 215

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  ++ +    + G  P+  + + L+R       I+I T 
Sbjct: 216 ALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE----IVIATP 271

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     S    +   +++DE  R          +K  +         P  +TL+ +
Sbjct: 272 GRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR------PDRQTLMWS 325

Query: 439 SLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    ++ ++ E   G      +    +   + I +V++       E K    +    + 
Sbjct: 326 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDT 385

Query: 495 KKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           +  V+        F      IHG  S  +++ V+  F++G   +L+A
Sbjct: 386 SESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 445

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV     +I  +        +H++ GR GR     +    +    +K +   
Sbjct: 446 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRI-GRTGRSNTKGTSFAFFTKNNAKQAKAL 504

Query: 608 LSVLKNTEDGFLIAEEDL 625
           + VL+        A E+L
Sbjct: 505 VDVLREANQEINPALENL 522


>gi|261492525|ref|ZP_05989078.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496800|ref|ZP_05993174.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307547|gb|EEY08876.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311684|gb|EEY12834.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 601

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 82/420 (19%), Positives = 156/420 (37%), Gaps = 52/420 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+  I  +L           +     GSGKT    + + A ++      Q ++MAP
Sbjct: 29  PSPIQQECIPHLLAGRDV------LGMAQTGSGKTAAFSLPLLAQIDPTQRHPQMLVMAP 82

Query: 330 IGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q  +  +++ +N   I V  + G      R     R     + +++GT     D
Sbjct: 83  TRELAIQVADACEQFAKNMKGIRVVTVYGG----QRYDIQLRALKQGSQVVVGTPGRILD 138

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE  R G    +           ++       +T + ++ 
Sbjct: 139 HIRRGTLDLSELKFIVLDEADEMLRMGFIDDV---------ETVMAELPETHQTALFSAT 189

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
               I +IT +   + P +  I    R    IE+   +++  +K   +   +E ++    
Sbjct: 190 MPEPIRRITRRFM-KDPQEVKIKATERSAPDIEQSYWLVNGFRKNDALLRFLEVEEFDAA 248

Query: 501 RSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                          L E      A ++G M+   +E  +D  ++G   +L+AT V   G
Sbjct: 249 IIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLRSGRLDILVATDVAARG 308

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           ID+   S++I  +      + +H++ GR GR       +L   P   +      +++K  
Sbjct: 309 IDIERISLVINYDIPLEEESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIENLIKKP 367

Query: 615 EDGFLIAEED--LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
            +   I   +  +++R+E              +  Q E HD  LE  R+  + + T D D
Sbjct: 368 INEVAIPNHEILMEKRREK---------FKARISKQLEHHD--LEKYRELLEDLFTADQD 416


>gi|189346086|ref|YP_001942615.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
 gi|189340233|gb|ACD89636.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
          Length = 418

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 136/361 (37%), Gaps = 37/361 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  IL           +     G+GKT    I +   + A          +
Sbjct: 23  TPTPIQAEAIPLILDG------NDLLGCAQTGTGKTAAFAIPVLQLLNAVKTNEKKRKIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           ++I+ P   LA Q  E  K Y ++T +   +I G + Q  +  +L++       I+I T 
Sbjct: 77  SLIITPTRELAIQIGESFKAYGRHTGLTSTVIFGGVNQNPQTASLQK----GIDILIATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D      +    +   ++DE  R      +   +K      +L       ++L  +
Sbjct: 133 GRLLDLMNQGHLHLRNIEFFVLDEADRMLDMGFIHDIRK------ILAELPKKKQSLFFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-- 496
           +    +I+++        P++  + P++   E+I +    + +G K   +   ++ +   
Sbjct: 187 ATMPPEITRLAAS-ILHNPVEVSVTPVSSTVEIINQQIFFVDKGNKNNLLVHLLKNQDIK 245

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  +   ++          + A IHG  +   ++  + +FK  T ++L+AT +  
Sbjct: 246 TALVFTRTKHGADKVVKYLLKHDITAAAIHGNKAQNARQRALTNFKEQTMRVLVATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GIDV +   +I  +  +     +H++ GR GR     + I        +       ++ 
Sbjct: 306 RGIDVDELEYVINFDMSNIAETYVHRI-GRTGRAGAKGTAISFCDAEEKEYLRDVEKLIA 364

Query: 613 N 613
            
Sbjct: 365 K 365


>gi|167855120|ref|ZP_02477892.1| intracellular septation protein A [Haemophilus parasuis 29755]
 gi|167853755|gb|EDS24997.1| intracellular septation protein A [Haemophilus parasuis 29755]
          Length = 603

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 159/421 (37%), Gaps = 52/421 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q++ I  +L           +     GSGKT    + + A ++      Q ++MA
Sbjct: 28  TPSPIQQACIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLAQIDPEQRHPQMLVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  +++++N   I    I G      R     R       +++GT     
Sbjct: 82  PTRELAIQVADACEQFSKNMKGIRTVTIYGG----QRYDIQIRALKNGVQVVVGTPGRIL 137

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D I+   L L ++        DE  R G  + +           ++       +T + ++
Sbjct: 138 DHIRRGTLDLSMLKAIVLDEADEMLRMGFIEDV---------ETVMAELPEDHQTALFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I +IT++   + P +  I    R    I +   +++  +K   +   +E ++   
Sbjct: 189 TMPEPIRRITKRFM-KDPQEVKIQATQRSAPDIAQSYWLVNGFRKNDALLRFLEVEEFDA 247

Query: 500 FRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                           L E      A ++G M+   +E  ++  K+G   +++AT V   
Sbjct: 248 AIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQAREQALEKLKSGRLDVIVATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+   S+++  +      + +H++ GR GR       +L   P   +       ++K 
Sbjct: 308 GIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLKNIEHLIKK 366

Query: 614 TEDGFLIAEED--LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
             D   +   +  +++R+E              +  Q E HD  LE+ R+  + + T D 
Sbjct: 367 PIDEVPVPNHEILMEKRREK---------FKARISLQLEHHD--LELYRELLEDLFTADQ 415

Query: 672 D 672
           D
Sbjct: 416 D 416


>gi|255950466|ref|XP_002566000.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593017|emb|CAP99391.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 552

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/366 (19%), Positives = 138/366 (37%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       L           +   + GSGKTL   +     + A        G  
Sbjct: 148 APTAIQSQGWPMALSGRDV------VGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPI 201

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T 
Sbjct: 202 VLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDLSR----GVEVCIATP 257

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++  +        L+L   D     G   Q R  ++Q        + +AT    
Sbjct: 258 GRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKD 317

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGR--KPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     +  T+  A      I  V+    + D++I+ L+ ++ +      
Sbjct: 318 VRQLASDFLSDYIQVNVGSTDLSANHRITQIVEVVADFEKRDKMIKHLEKIMEDRSNKCI 377

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            R   +    L +    +++I HG     +++ V++ FK G   +++A
Sbjct: 378 IFT-------GTKRVADDITRFLRQDGWPALSI-HGDKQQNERDWVLNEFKQGKSPIMVA 429

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV D + ++  +  +     +H++ GR  R     + I  +    SK +   
Sbjct: 430 TDVASRGIDVRDITHVLNYDYPNNSEDYVHRI-GRTARAGAKGTAITFFTTDNSKQARDL 488

Query: 608 LSVLKN 613
           +++L  
Sbjct: 489 ITILTE 494


>gi|260576594|ref|ZP_05844582.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
 gi|259021198|gb|EEW24506.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
          Length = 453

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 129/360 (35%), Gaps = 37/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  AI  I+Q       ++ + Q   G+GKT    + +   +            +
Sbjct: 24  KPTPIQLQAIPLIMQG----RDLMGLAQ--TGTGKTAAFGLPLLHRLLDIGHPPAPRSVR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+IMAP   L  Q  E ++ +T+ T + V  +TG      + + L R     A +++ T 
Sbjct: 78  ALIMAPTRELVSQISEALEVFTKGTAVKVVTVTGGASLFRQSERLAR----GADVLVATP 133

Query: 384 ALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D +    L L       +DE  +      +   +K      L        +TL+ +
Sbjct: 134 GRLIDLLDRNALTLEHCGYLVLDEADQMLDMGFIHALKKIAKHLPL------KRQTLLFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I  + +    R P+K  + P  +  E I +      +G KA  +   ++     
Sbjct: 188 ATMPKLIEDLAQTYL-RDPVKVQVAPPGKPIEAIVQGVHYTPQGDKARLLEEYLKTHPGE 246

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +   E+   L   +      IHG  S   +E  +  F+ G   +L+AT V  
Sbjct: 247 MALVFGRTKHGSEKLMKLLVAWGFKAGSIHGNKSQNQRERTLSEFREGALDVLVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+     +   +  +     +H++ GR  R       +    P   +       +LK
Sbjct: 307 RGIDISGVRHVYNYDMPNVPENYVHRI-GRTARAGADGKAVAFCAPAEMEEIQAIEKLLK 365


>gi|198283274|ref|YP_002219595.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667828|ref|YP_002425861.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247795|gb|ACH83388.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520041|gb|ACK80627.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 418

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 128/369 (34%), Gaps = 45/369 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--AVEAG-------- 321
           SPT  QE AI  ++        +  +     G+GKT    + +    AV AG        
Sbjct: 24  SPTPIQEQAIPVVMSG------VDLLAGAQTGTGKTAAFAMPILHKLAVTAGSASRAPSS 77

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q    ++ Y +   +   ++ G +    + + L R       I++ 
Sbjct: 78  VRALILVPTRELAAQVEASVQLYGRYLPLRSLVLIGGVKINPQMQKLRRS----VDILVA 133

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-- 429
           T     D IQ           L+L   D     G     R  L         LL +AT  
Sbjct: 134 TPGRLLDHIQQRSVDLSHVEILVLDEADRMLDMGFIRDIRRILAVLPKKRQNLLFSATFS 193

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYW 487
           P  R L    L +    ++  + A    +   +  +  +R  E++  L      G+   +
Sbjct: 194 PEIRGLADGLLNNPTSVEVAARNATADNVAQRVFAVDQDRKRELLSHLIEEHQWGQVLVF 253

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                     +  +   +R              IHG  S   +   +  FK G  ++L+A
Sbjct: 254 ----------TRTKHGADRLARHLSQDGMQAMAIHGDKSQGARTRALAEFKEGKVQVLVA 303

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   GID+ +   ++     H     +H++ GR GR       + L      K     
Sbjct: 304 TDIAARGIDISELPHVVNFELPHVPEDYVHRI-GRTGRAGNNGQAVSLVSSEERKQLQDV 362

Query: 608 LSVLKNTED 616
             +L+ + D
Sbjct: 363 EKLLRRSFD 371


>gi|149184420|ref|ZP_01862738.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
 gi|148831740|gb|EDL50173.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
          Length = 359

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 128/341 (37%), Gaps = 37/341 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  IL           I     G+GKT   ++ M   + +G       +++
Sbjct: 23  EPTPIQAQAIPPIL------MMKDIIGIAQTGTGKTASFVLPMIDVMASGRRRALMPRSL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+AP   LA Q  E  +KY +N  + + ++ G +    + KAL         ++I T   
Sbjct: 77  ILAPTRELAAQVAENFEKYGKNHDLKLALLIGGVQMGDQIKALNE----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIPR 433
             D  +  K++L      ++DE  R      +   +            +L +AT  P   
Sbjct: 133 LMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICSKLPEQRQTMLFSATMPPPIE 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L    L +    +++      K I    IP+    +      ++ ++  +   I     
Sbjct: 193 KLAKKFLDNPKRIEVSRAATTNKDITAFKIPVESRKKRETLRWLLRNDHVETAIIF---- 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               +   +V E   SL +H  +S  I HG M    +   +D FKNG   +L+A+ V   
Sbjct: 249 ---ANRKTTVRELNKSLQQHGFASSEI-HGDMDQSSRIKELDRFKNGEVNILVASDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           G+DV   S +   +        +H++ GR GR         
Sbjct: 305 GLDVKGVSHVFNFDTPWHPDDYVHRI-GRTGRAGAKGRAFT 344


>gi|148242659|ref|YP_001227816.1| superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
 gi|147850969|emb|CAK28463.1| Superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
          Length = 560

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 141/372 (37%), Gaps = 36/372 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q +AI +++           + Q   G+GKT    + + A +       Q +++A
Sbjct: 37  QPSPIQAAAIPELMLGRD------LLGQAQTGTGKTAAFALPLLARINLEARHPQVLVLA 90

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  ++Y   T  + V  + G      +   L R      H+++GT     
Sbjct: 91  PTRELAIQVSEAFQRYASCTPGLHVLPLYGGSDFRDQIHKLRR----GVHVVVGTPGRVM 146

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRT--L 435
           D +        Q   L+L   DE  R G    +K    Q  +   V+L +AT  P    +
Sbjct: 147 DHMRQGTLNVSQLETLVLDEADEMLRMGFIDDVKWVLEQLPSERQVVLFSATMPPEIKRI 206

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L +     I  + A    I+   I +    ++   L+V+ + G     I  +    
Sbjct: 207 SQQHLQNPAEVIIRTQKADASRIRQRHILLPHQQKLSALLRVLEAHGPGGVIIFART--- 263

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++V        E    + ++++G +    +E  ++  K G   +L+AT V   G+
Sbjct: 264 -----KAVTVTVAEALEAEGIACSVLNGDVPQSLRERTIERLKQGRIDVLVATDVAARGL 318

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV    +++  +A     A +H++ GR GR       IL       +  ++    + ++ 
Sbjct: 319 DVDRIGLVVNYDAPFDSEAYVHRI-GRTGRAGRQGDAILFLSYRERRLLHSLERAVGSSI 377

Query: 616 DGFLIAEEDLKQ 627
           D   +   D + 
Sbjct: 378 DAMDVPS-DAEI 388


>gi|24644479|ref|NP_524243.2| Rm62, isoform A [Drosophila melanogaster]
 gi|30923187|sp|P19109|DDX17_DROME RecName: Full=ATP-dependent RNA helicase p62
 gi|23175945|gb|AAG22213.2| Rm62, isoform A [Drosophila melanogaster]
 gi|41058179|gb|AAR99134.1| RE11923p [Drosophila melanogaster]
          Length = 719

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 134/378 (35%), Gaps = 41/378 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       +           +     GSGKTL  ++     +          G  
Sbjct: 303 APTAIQAQGWPIAMSG------SNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPI 356

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  ++ +    + G  P+  + + L+R       I+I T 
Sbjct: 357 ALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE----IVIATP 412

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     S    +   +++DE  R          +K  +         P  +TL+ +
Sbjct: 413 GRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR------PDRQTLMWS 466

Query: 439 SLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    ++ ++ E   G      +    +   + I +V++       E K    +    + 
Sbjct: 467 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDT 526

Query: 495 KKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           +  V+        F      IHG  S  +++ V+  F++G   +L+A
Sbjct: 527 SESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 586

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV     +I  +        +H++ GR GR     +    +    +K +   
Sbjct: 587 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRI-GRTGRSNTKGTSFAFFTKNNAKQAKAL 645

Query: 608 LSVLKNTEDGFLIAEEDL 625
           + VL+        A E+L
Sbjct: 646 VDVLREANQEINPALENL 663


>gi|88860375|ref|ZP_01135013.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           tunicata D2]
 gi|88817573|gb|EAR27390.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           tunicata D2]
          Length = 609

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/367 (19%), Positives = 134/367 (36%), Gaps = 41/367 (11%)

Query: 267 RNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
             + + +P++ Q   I  +L           +     G+GKT    + +   ++A     
Sbjct: 21  EKLGYVTPSEIQAQCIPFLLNGKDV------LGLAQTGTGKTAAFALPLLNNIDATVKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E  ++Y Q    I V  + G      +   L         +I+ 
Sbjct: 75  QVLVLAPTRELAIQVAEAFEQYAQFIKGINVLALYGGQSYNVQLSGLRN----GPQVIVA 130

Query: 382 THALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D +            L+L   DE  R G  + +   + +        L +AT  
Sbjct: 131 TPGRLIDHLNRGTIKFDHLKALVLDEADEMLRMGFIEDVETIMAKTPKQKQTCLFSATMP 190

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYW 487
            +   +  T L D +   I+ + +  + ++ V    N  + + +I  L+    +G   + 
Sbjct: 191 QQIQKICSTYLEDAEHVHISARNSTVESVEQVYWQANTHKNNAIIRFLQAETYDGAIVFV 250

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        R+       L E    S A ++G M+   +E  ++  KNG   ++IA
Sbjct: 251 -----------RTRNDTVEIAELLEQAGFSAAPLNGDMNQQARERTVERLKNGLLDIVIA 299

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV   S++I  +      A +H++ GR GR       IL             
Sbjct: 300 TDVAARGLDVDRLSLVINYDIPQDSEAYVHRI-GRTGRAGRTGKAILFVKHNERHLLRNI 358

Query: 608 LSVLKNT 614
           +   K+T
Sbjct: 359 IQHTKST 365


>gi|291522717|emb|CBK81010.1| Superfamily II DNA and RNA helicases [Coprococcus catus GD/7]
          Length = 526

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 130/350 (37%), Gaps = 44/350 (12%)

Query: 269 IPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQA 324
           + F   T  Q  AI +++           I Q   G+GKT    I M   V+      QA
Sbjct: 22  MGFEEATPIQAKAIPEVMTGQD------IIGQAQTGTGKTASFGIPMLQKVDPKNKHVQA 75

Query: 325 VIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  + I+K  +    I V  I G      + ++L+        ++IGT 
Sbjct: 76  IVLCPTRELAIQSADEIRKLAKFMHGIKVLPIYGGQDIVKQIRSLKT----GVQVLIGTP 131

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRT 434
               D ++ +         ++L   DE    G ++ ++           +++ TP   +T
Sbjct: 132 GRVMDHMRRHTIKLDDLKIVVLDEADEMLNMGFREDIE----------TILSQTPEERQT 181

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I +I         I  V+     +   IE+    +    K   +   ++ 
Sbjct: 182 LLFSATMPQPIMEIARTYQKNAKIVKVVKRELTVAN-IEQYYYEVRPKNKEEVLSRLLDI 240

Query: 495 K-------KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                     +  R V E    L      +  + HG M    ++ VM+ F+NG  ++L+A
Sbjct: 241 YNPALSVVFCNTKRQVDELVEGLKGRGYFAEGL-HGDMKQQQRDRVMNGFRNGRTEILVA 299

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           T V   GIDV D   +   +        +H++ GR GR  +         
Sbjct: 300 TDVAARGIDVDDVDAVFNYDLPQDDEYYVHRI-GRTGRAGKNGKAFTFIT 348


>gi|24644485|ref|NP_731033.1| Rm62, isoform C [Drosophila melanogaster]
 gi|24644487|ref|NP_731034.1| Rm62, isoform F [Drosophila melanogaster]
 gi|45551833|ref|NP_731035.2| Rm62, isoform B [Drosophila melanogaster]
 gi|10727151|gb|AAG22212.1| Rm62, isoform F [Drosophila melanogaster]
 gi|23175947|gb|AAN14332.1| Rm62, isoform C [Drosophila melanogaster]
 gi|25012758|gb|AAN71471.1| RE68337p [Drosophila melanogaster]
 gi|45446365|gb|AAF51926.2| Rm62, isoform B [Drosophila melanogaster]
 gi|220950572|gb|ACL87829.1| Rm62-PB [synthetic construct]
          Length = 578

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 134/378 (35%), Gaps = 41/378 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       +           +     GSGKTL  ++     +          G  
Sbjct: 162 APTAIQAQGWPIAMSG------SNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPI 215

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  ++ +    + G  P+  + + L+R       I+I T 
Sbjct: 216 ALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE----IVIATP 271

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     S    +   +++DE  R          +K  +         P  +TL+ +
Sbjct: 272 GRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR------PDRQTLMWS 325

Query: 439 SLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    ++ ++ E   G      +    +   + I +V++       E K    +    + 
Sbjct: 326 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDT 385

Query: 495 KKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           +  V+        F      IHG  S  +++ V+  F++G   +L+A
Sbjct: 386 SESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 445

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV     +I  +        +H++ GR GR     +    +    +K +   
Sbjct: 446 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRI-GRTGRSNTKGTSFAFFTKNNAKQAKAL 504

Query: 608 LSVLKNTEDGFLIAEEDL 625
           + VL+        A E+L
Sbjct: 505 VDVLREANQEINPALENL 522


>gi|258422918|ref|ZP_05685818.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
 gi|257846942|gb|EEV70956.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
          Length = 506

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 135/350 (38%), Gaps = 37/350 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L ++ F  PT  Q+ +I   LQ +        + Q   G+GKT    I +   V  + G 
Sbjct: 17  LESMGFKEPTPIQKDSIPYALQGID------ILGQAQTGTGKTGAFGIPLIEKVVGKQGV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q++I+AP   LA Q  E ++++++   + V  + G MP   + KAL++       I++GT
Sbjct: 71  QSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK----GPQIVVGT 126

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +          + LIL   DE    G    ++                   +T
Sbjct: 127 PGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAAQ--------RQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I  + ++   + P     +     D  IE    ++ E +K       ++ 
Sbjct: 179 MLFSATMPKAIQALVQQFM-KSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +      F     R + L     S       +HG ++   +  V+  FKN    +L+AT
Sbjct: 238 HQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|229893773|gb|ACQ90244.1| DEAD-box RNA helicase [Glycine max]
          Length = 537

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/394 (18%), Positives = 139/394 (35%), Gaps = 43/394 (10%)

Query: 246 QFKKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           + K          G     +     F  P+  Q  A   +L           I     GS
Sbjct: 112 EAKYAAVKSFADSGLPENVLECCKGFEKPSPIQSRAWPFLLDGRD------LIGIAATGS 165

Query: 305 GKTLVALIAMAAAVEAGGQA----------VIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           GKTL   I     V    +           ++++P   LAQQ  + +    ++  +    
Sbjct: 166 GKTLAFGIPAVMHVLGKRKGKSSKGRNPLGLVLSPTRELAQQISDVMCDAGRSCGVQSIC 225

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRF 406
           + G   +  +  +L+        I+IGT    QD I+     L  V        D     
Sbjct: 226 LYGGTSKGPQISSLKS----GIDIVIGTPGRIQDLIEMGICCLKEVSFVVLDEADRMLDM 281

Query: 407 GVQQ--RLKLTQKATAPHVLLMTAT-PIPRTLVLTSLGDIDISKI----TEKPAGRKPIK 459
           G +Q  R  L Q  +   +++ +AT P+P   +     D +  K+     +  A    ++
Sbjct: 282 GFEQIVRSILGQTCSDRQMVMFSATWPLPVHYLAQEFMDPNPVKVVVGSEDLAANHDVMQ 341

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            V +  +R  +      +      +   +   +  K E+       R  ++ +     + 
Sbjct: 342 IVEVLDDRSRDKRLVALLEKYHKSQRNRVLVFVLYKLEAK------RVENMLQEGGWKVV 395

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG  +  D+   +  FKN +C L+IAT V   G+D+ D  ++I  +        +H++
Sbjct: 396 SIHGDKAQHDRTKALSLFKNASCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRI 455

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            GR GR  +       +       +   ++VL+ 
Sbjct: 456 -GRTGRAGKKGVAHTFFMQQNKGLAGELVNVLRE 488


>gi|294893710|ref|XP_002774608.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239880001|gb|EER06424.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 520

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/365 (20%), Positives = 132/365 (36%), Gaps = 38/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       +        M+ I   + GSGKTL  L+     + A        G  
Sbjct: 133 APTPIQIQGWPVAM----SGRDMVGI--AETGSGKTLAFLLPAIVHINAQPYLQRGDGPI 186

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++MAP   LA Q  E   K+ ++++I      G +P+  + + L         I I T 
Sbjct: 187 VLVMAPTRELAVQIQEECNKFGKSSKIKNTCCYGGVPRGPQARDLSE----GVEICIATP 242

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D ++  +        L+L   D     G + +++    Q       LL +AT    
Sbjct: 243 GRLIDFLESQRTNLRRVTYLVLDEADRMLDMGFEPQIRKITSQIRPDRQTLLWSATWPKE 302

Query: 434 TLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
              L      +      +           T  + + +  E  +RLKV+L        +  
Sbjct: 303 VQGLARDLCREEPVHINVGTLTLKACHNVTQYVDVVQEYEKRDRLKVLLERVMDGSKLLI 362

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             + K     R   +   +L      ++ I HG     +++ V+  FK+G   ++IAT V
Sbjct: 363 FTDTK-----RGADDLTRTLRMDGWPALCI-HGDKKQEERDWVLHEFKSGKSPIMIATDV 416

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D   ++  +        +H++ GR GR     +    + P   K +   + +
Sbjct: 417 ASRGLDVKDIRHVVNYDFPGQIEDYVHRI-GRTGRAGCKGNAYTFFTPDKIKMARDLVQI 475

Query: 611 LKNTE 615
           L+   
Sbjct: 476 LREAN 480


>gi|225011497|ref|ZP_03701935.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
 gi|225004000|gb|EEG41972.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
          Length = 415

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/362 (19%), Positives = 140/362 (38%), Gaps = 38/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------AGGQ-- 323
            PT  QE AI  +L+          +     G+GKT    I +   +        G +  
Sbjct: 23  QPTPIQEQAIPILLKGHD------LLGVAQTGTGKTAAFGIPILNHLLKENNSGQGKRKI 76

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   LA Q  E    Y+Q T +   +I G + Q+ +  +L++       I++ T
Sbjct: 77  KALVVTPTRELAIQIAENFTDYSQFTHLRNTVIFGGVKQSKQVASLQQ----GVDILVAT 132

Query: 383 HALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D +      +  L  V++DE  +      +   +K      ++    P  ++L  
Sbjct: 133 PGRLLDLMNQGYITFRDLKYVVLDEADQMLDMGFIHDVKK------IIAKLPPNRQSLFF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++     I ++++K  G     T I P     E +++    +S+  K   +   ++++ +
Sbjct: 187 SATMPKTIVELSQKMLGDFERVT-IKPEQATAEKVKQGVYFVSKNNKPNLLIHLLDQRPQ 245

Query: 498 S------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +    +     +      A IHG  S   ++  +  FK+G+ K+LIAT + 
Sbjct: 246 DSVLVFSRTKHGANKIVKTLDKAKIKSAAIHGNKSQAQRQKALGEFKDGSLKVLIATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV D +++I  +  +     +H++ GR GR       +                ++
Sbjct: 306 ARGIDVDDLALVINYDLPNVSETYVHRI-GRTGRASASGIALSFCMGDERPYLKDIEKLI 364

Query: 612 KN 613
           K 
Sbjct: 365 KQ 366


>gi|251764758|sp|B7ZTW1|IF4A3_XENTR RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|213624377|gb|AAI71014.1| hypothetical protein LOC100135173 [Xenopus (Silurana) tropicalis]
          Length = 415

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 135/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    +++   ++      QA+I+A
Sbjct: 64  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFCVSVLQCLDIQVRETQALILA 117

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 118 PTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 173

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V L++AT     L +T
Sbjct: 174 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMT 233

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 234 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 286

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 287 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 346

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 347 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 405

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 406 EMPMNVADL 414


>gi|166157858|ref|NP_001107349.1| eukaryotic initiation factor 4A-III [Xenopus (Silurana) tropicalis]
 gi|163916017|gb|AAI57178.1| LOC100135173 protein [Xenopus (Silurana) tropicalis]
          Length = 415

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 135/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    +++   ++      QA+I+A
Sbjct: 64  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFCVSVLQCLDIQVRETQALILA 117

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 118 PTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 173

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V L++AT     L +T
Sbjct: 174 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMT 233

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 234 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 286

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 287 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 346

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 347 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 405

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 406 EMPMNVADL 414


>gi|327292871|ref|XP_003231133.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
           rubrum CBS 118892]
 gi|326466763|gb|EGD92216.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
           rubrum CBS 118892]
          Length = 1180

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 138/379 (36%), Gaps = 47/379 (12%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----- 318
           ++R + +  PT  Q  A+  I+           I     GSGKT+  L+ M   +     
Sbjct: 561 VIRKLGYERPTSIQSQAVPAIMSGRDV------IGVAKTGSGKTIAFLLPMFRHIRDQRP 614

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  +VIM P   LA Q +   + + +   +      G  P   +   L+R     
Sbjct: 615 LENMEGPISVIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKR----G 670

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K          
Sbjct: 671 AEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIR---- 726

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K    KPI+ ++   + +   I ++  V ++  K   
Sbjct: 727 --PNRQTVLFSATFPRNMEALARKTL-SKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVR 783

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  + L             IHG    ID++S +D
Sbjct: 784 LLELLGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTID 843

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    +++  +A +     +H+  GR GR     + +  
Sbjct: 844 DFKAGIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 902

Query: 596 YHPPLSKNSYTRLSVLKNT 614
                 + S      LK +
Sbjct: 903 LTEDQERYSVDISKALKQS 921


>gi|315042594|ref|XP_003170673.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Arthroderma
           gypseum CBS 118893]
 gi|311344462|gb|EFR03665.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Arthroderma
           gypseum CBS 118893]
          Length = 1183

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 138/379 (36%), Gaps = 47/379 (12%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----- 318
           ++R + +  PT  Q  A+  I+           I     GSGKT+  L+ M   +     
Sbjct: 564 VIRKLGYEGPTSIQSQAVPAIMSGRDV------IGVAKTGSGKTIAFLLPMFRHIRDQRP 617

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  ++IM P   LA Q +   + + +   +      G  P   +   L+R     
Sbjct: 618 LENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKR----G 673

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K          
Sbjct: 674 AEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIR---- 729

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K    KPI+ ++   + +   I ++  V ++  K   
Sbjct: 730 --PNRQTVLFSATFPRNMEALARKTL-SKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVR 786

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  + L             IHG    ID++S +D
Sbjct: 787 LLELLGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTID 846

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    +++  +A +     +H+  GR GR     + +  
Sbjct: 847 DFKAGIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 905

Query: 596 YHPPLSKNSYTRLSVLKNT 614
                 + S      LK +
Sbjct: 906 LTEDQERYSVDISKALKQS 924


>gi|311032368|ref|ZP_07710458.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. m3-13]
          Length = 481

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 82/390 (21%), Positives = 153/390 (39%), Gaps = 47/390 (12%)

Query: 259 GKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           G+   K L+++ +  PT  QE  I   L       +   I++   GSGKT    + +   
Sbjct: 11  GEDIVKALKSLNYLKPTNVQEEVIPKALA------KSDIIVKSQTGSGKTAAFAVPLCDL 64

Query: 318 V---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           V   E   QA+++ P   LA Q  + I    +  ++    I G      ++  L++    
Sbjct: 65  VHWEENKPQALVLTPTRELAAQVKDDITNIGRYKRVKATAIYGKQSFQRQKLELKQ---- 120

Query: 375 QAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGV-QQRLKLTQKATAPHVLL 425
           ++HI++GT     D ++   L        ++   DE    G   Q   + Q      V  
Sbjct: 121 KSHIVVGTPGRVLDHLEKGTLDVSRLEYLVIDEADEMLNMGFIDQVESIIQMLPKSRV-- 178

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
                   T++ ++    DI +++ +     P+   I       + IE +   + EG+K 
Sbjct: 179 --------TMLFSATLPEDIKQLSNQYMT-NPVFIEIESGGLTTDRIEHIWYEVGEGEKK 229

Query: 486 YWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
           + +   I   +  +    F +  E  + +H +   +      +HG +   D+ SVM++FK
Sbjct: 230 FLLLKDITVVENPDSCIVFCATQEEVDKVHRNLHRAGYPCGKLHGGLVQEDRFSVMNAFK 289

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  + LIAT V   GID+ D S++I  +        +H++ GR  R  +    I L   
Sbjct: 290 RGEFRYLIATDVASRGIDIEDISLVINYDIPSDKERFVHRI-GRTARAGKSGKAITLIST 348

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
               +       +     G  I+  +  +R
Sbjct: 349 SEHHHLEEIEDFI-----GIKISRAEAPKR 373


>gi|288925923|ref|ZP_06419853.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17]
 gi|288337347|gb|EFC75703.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17]
          Length = 375

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/358 (19%), Positives = 136/358 (37%), Gaps = 37/358 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q+ AI   L+          +     G+GKT    I +   +            +
Sbjct: 23  TPTPIQQKAIPIGLEGRD------LLGIAQTGTGKTAAFAIPIIQQLAKSADDNRRRDIK 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  E  K Y++ T++   +I G + Q  + K LER       I+I T 
Sbjct: 77  ALILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKELER----GVDILIATP 132

Query: 384 ALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D I  + + L  +     DE  R      +   +K      L+       +TL+ +
Sbjct: 133 GRLLDLISQHIITLEHICHFVLDEADRMLDMGFIHDIKK------LIPLLPKRRQTLLFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I+K++ K    KP +  + P++ + + IE+    + + +K   +   ++     
Sbjct: 187 ATMPETIAKLS-KSLLYKPARVEVAPVSSVVDTIEQRLYFVEKPQKTDLLVSVLKNDGNR 245

Query: 499 ------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +   +R     +        IHG  S   ++  + +FK+G  ++++AT +  
Sbjct: 246 SALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRVIVATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
            GID+ +  ++I  +        +H++ GR GR       +                +
Sbjct: 306 RGIDIANLQMVINYDLPDVAETYVHRI-GRTGRAGNSGVALTFCTQDERPMVRDIQKL 362


>gi|257141454|ref|ZP_05589716.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
          Length = 465

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/460 (17%), Positives = 168/460 (36%), Gaps = 60/460 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I     GSGKT    +A+ A ++A    
Sbjct: 23  LAQLGYTVMTPIQAASLPIALAGHD------LITHAKSGSGKTAAFSLALLARLDARRFD 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    + V  + G  P   + ++LE      AHII+
Sbjct: 77  VQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIIV 132

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 133 GTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVAR------LCPPTRQTL 186

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   ++  
Sbjct: 187 LFSATYPDGIAKLSQQFLRNP--KEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLKHY 244

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 245 RPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 305 VAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQEGWALSLASMDEMGRVGAIEQ 363

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILG--IKQSGMPKFLIA 647
            L    +   +A              E L+           G++LG     +G     I 
Sbjct: 364 ALGRDVEWHPLAELKADGNEPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGSQIG 423

Query: 648 QP--ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +       + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 424 KINVTEFSTYVALERGIARDALRKL-NAGKIKGKRVKVRL 462


>gi|240103967|ref|YP_002960276.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Thermococcus
           gammatolerans EJ3]
 gi|239911521|gb|ACS34412.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Thermococcus
           gammatolerans EJ3]
          Length = 403

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 128/344 (37%), Gaps = 41/344 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT  Q   I  +L+       +  I Q   G+GKT    + +  A++      QA+I+ P
Sbjct: 35  PTDIQREVIPRLLEG-----EVDIIGQSQTGTGKTAAFALPIIEAIDPNEKTVQAIILTP 89

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q    IK      ++ V  I G  P   + +ALER      H+++GT     D 
Sbjct: 90  TRELALQVANEIKSLRGKKRVYVYAIYGGQPIGPQIRALER----GVHVVVGTPGRVLDH 145

Query: 390 IQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           +    L L  V        D     G        + +      +L+ +AT     L+L  
Sbjct: 146 LNRGTLDLSSVRFFVLDEADRMLDMGFVDDIEEIMRRAPQEKRILMFSATMPMGILLLAK 205

Query: 440 LGDID-----ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
               +     +S+    P         ++P  +     E+LK VL EG      C    E
Sbjct: 206 KYMRNPEVILVSRDEVVPEMVDQEYVEVLPARK----YEKLKEVLGEGFYGIIFCHTKRE 261

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            +E + R   + F             ++G MS   +E     FK G   +L+AT V   G
Sbjct: 262 TRELSERLRRDSF---------RADALNGDMSQAARERTFGRFKEGKINVLVATDVAARG 312

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +DV + S +I  +        +H++ GR GR  +    I    P
Sbjct: 313 LDVREISHVINYSLPMNTEQYIHRI-GRTGRMGKRGKAITFLKP 355


>gi|325289283|ref|YP_004265464.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964684|gb|ADY55463.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 382

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 133/361 (36%), Gaps = 38/361 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  QE AI  +L+          +     G+GKT    I +   +             
Sbjct: 23  APTPIQERAIPAVLKGRD------LLGCAQTGTGKTAAFSIPLLQILSRERINERAPRTI 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  E ++ Y +   I   +I G + Q  + +A++        I++ T
Sbjct: 77  RALILAPTRELALQTGENLRAYGKYLGIKHTVIFGGVSQDAQTRAMKA----GVDILVAT 132

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      ++   + L+++DE  R          +       +L       +TL+ 
Sbjct: 133 PGRLLDLMGQGYVRLDHIKLLVLDEADRMLDMGFAHDMK------RILAKLPAAKQTLLF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    ++  +        P+K  + P++   + I++    + +  K   +   +  +  
Sbjct: 187 SATMPPEMKAMAG-AILSNPVKIEVAPVSSTADTIDQSVYFVEKSGKKALLIELLRNQSV 245

Query: 498 S------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   +      E        IHG  S   +++ +++FK    ++L+AT + 
Sbjct: 246 DSALVFTRTKHGADNVVRALEKARIKAQAIHGNKSQAARQTALNNFKAKRTRVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV + S +I  +  +     +H++ GR GR     + +                ++
Sbjct: 306 ARGIDVQELSHVINFDLPNIPETYVHRI-GRTGRAGMGGTALSFCDDEEKTYLRDIQKLI 364

Query: 612 K 612
            
Sbjct: 365 A 365


>gi|316979810|gb|EFV62545.1| ATP-dependent RNA helicase DDX42 [Trichinella spiralis]
          Length = 741

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/407 (18%), Positives = 132/407 (32%), Gaps = 38/407 (9%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +  K           +    ++R   FS PT  Q   I  ++           I     G
Sbjct: 197 RAPKLVTSFAHFGFDEKLMSLIRKYEFSQPTPIQAQGIPVVMSGRD------IIGIAKTG 250

Query: 304 SGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           SGKT   L      +        + G   +I+ P   LA Q Y   KKY +   I V   
Sbjct: 251 SGKTAAYLWPAIYHIISQRHLDEKEGPICLIVVPTRELAIQVYNEAKKYGKYFDIRVVCA 310

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGV-- 408
            G   +  + KAL       A +++ T     D I+     + ++   ++DE  R     
Sbjct: 311 YGGGSKWEQSKALAE----GAEVVVCTPGRIIDLIKAKATNFERVTYFVLDEADRMFDLG 366

Query: 409 ---QQRLKLTQKATAPHVLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVII 463
              Q R            L+ +AT   +   L    L +       E       I+ ++ 
Sbjct: 367 FEAQVRSIADHIRPDRQCLMFSATFKKKIERLARDVLTNPVKVIQGEVGEANADIQQIVE 426

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
                      L   L +      +   I +      +  VE      +     + I+HG
Sbjct: 427 YFASPPTKWTWLLGNLVKFCSMGKVLIFISQ------KVHVEEIAENLKAKDFRVCILHG 480

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            M   ++  V+ +FK     +LIAT V   G+D+     +I  +        +H++ GR 
Sbjct: 481 DMFQHERNQVIHAFKKDDVPILIATDVAARGLDIPTIKTVINYDVAKDLDTHVHRI-GRT 539

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           GR  E      L      + +   +  L++       A  +L  +  
Sbjct: 540 GRAGEKGFAYTLVTDKDKEFAGHLVKSLESVNQEVPTALLNLAMQSA 586


>gi|295394794|ref|ZP_06805009.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972390|gb|EFG48250.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 586

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 139/376 (36%), Gaps = 42/376 (11%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   + + ++ +  P+  Q   I  +LQ          I     G+GKT    + + ++
Sbjct: 22  DERVARAVADLGYESPSPIQAKTIPFLLQGRDV------IGLAQTGTGKTAAFALPLLSS 75

Query: 318 VE-----AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERI 371
           +          A+I+AP   LA Q  E +  Y  +     V  I G      +   L+R 
Sbjct: 76  IAGRERPTSPLALILAPTRELAIQVAEALTSYATHLGDFSVLPIYGGQSYTPQISGLKR- 134

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHV 423
               AH+++GT     D I+   L L  V        DE  + G Q+ ++     T    
Sbjct: 135 ---GAHVVVGTPGRVIDHIKRGTLDLSHVEHLVLDEADEMLKMGFQEDIEEIFAKTN--- 188

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
                 P  +  + ++     I +IT +     P +  I         I +  + +    
Sbjct: 189 ------PDRQVALFSATMPASIHRITGQYLN-DPAEVRIQAKTTTSANIRQRYLTVMHSH 241

Query: 484 KAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           K   +   +E +K          +   E      +    S A I+G +  + +E  +++ 
Sbjct: 242 KLDALTRILEVEKYDGIIMFVRTKQETEELADKLKARGFSAAAINGDIPQVVRERTVEAL 301

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G+  +L+AT V   G+DV   S+++  +  H   + +H++ GR GR       IL   
Sbjct: 302 RSGSIDILVATDVAARGLDVERISLVVNFDIPHDTESYVHRI-GRTGRAGRTGEAILFVT 360

Query: 598 PPLSKNSYTRLSVLKN 613
           P  ++         + 
Sbjct: 361 PRENRLLKAIEKATRQ 376


>gi|293364998|ref|ZP_06611715.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
 gi|291316448|gb|EFE56884.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
          Length = 524

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 133/363 (36%), Gaps = 34/363 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +   L L  +        DE    G        +++       LL +AT     + + + 
Sbjct: 135 KRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  KI  K    + +    I +   ++     +++  E  +   +  +       
Sbjct: 195 FMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+ 
Sbjct: 249 --KRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    I    P          ++ K    G 
Sbjct: 307 GVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVSPNEMGYLQIIENLTKKRMKGL 365

Query: 619 LIA 621
             A
Sbjct: 366 KPA 368


>gi|294142025|ref|YP_003558003.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 427

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/377 (19%), Positives = 133/377 (35%), Gaps = 48/377 (12%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
           ++L  + ++ PT  Q  AI  IL           +     GSGKT    + +   + A  
Sbjct: 24  QVLTELGYTQPTPIQTQAIPAILAGQD------IMAGAQTGSGKTAAFALPILNKLTAQI 77

Query: 323 ----------------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
                           +A+++ P   LA Q +    KY + TQ+   ++ G +    + +
Sbjct: 78  CLQKTEAQDSADKPAIRALVLTPTRELALQVHGSFVKYAKLTQVKSALVYGGVSIDAQAQ 137

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQ 416
            L         I++ T     D ++   L L  +        D     G +  +   + Q
Sbjct: 138 ILAA----GVDILVATPGRLLDHLRRGSLNLNQLEFLVFDEADRMLDMGFKDEIDAIVKQ 193

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIER 474
                  LL +AT       L+     D  +I   E+ A    I   +  ++   ++   
Sbjct: 194 LPKTRQTLLFSATFDESIYGLSQSLLRDPKQIEVGERNAAAVEIDQRVYAVDSDRKLALV 253

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             ++ S   +   I  +         +   ++  +       S    HG +S   +E V+
Sbjct: 254 THLIESGNLQQVLIFSR--------KKLAADKLAANLTKAGISAQAFHGDLSQGAREKVL 305

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             FK+G  ++L+AT V   GID++D + +I     +     +H++ GR GR       I 
Sbjct: 306 QGFKDGEVRVLVATDVAARGIDIIDLNYVINYELPYKAEDYVHRI-GRTGRAGNKGLAIT 364

Query: 595 LYHPPLSKNSYTRLSVL 611
           L              VL
Sbjct: 365 LLCSEDEHLLEEVEVVL 381


>gi|28211624|ref|NP_782568.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28204066|gb|AAO36505.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 524

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/352 (21%), Positives = 135/352 (38%), Gaps = 38/352 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           + ++ F  P+K Q   I  +LQ          I Q   G+GKTL     +  ++      
Sbjct: 19  IEDMGFETPSKIQAEVIPIVLQGFDV------IGQAQTGTGKTLAFGAPVLNSISNESKK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +++I+AP   LA Q Y+ +    + T+  +  + G      + K+L++       I+IG
Sbjct: 73  VKSIILAPTRELAIQVYKELTTVAKYTKFKLLPVYGGDSIDRQIKSLKK----GIDIVIG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    QD I    L L  +        DE    G    ++           L +     R
Sbjct: 129 TPGRVQDLINRKALNLSHIEFLVLDEADEMLNMGFVDDIENI---------LKSCNEDRR 179

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++    +I KI +K   +      I   +     +E+    + +  K   +C  + 
Sbjct: 180 TLLFSATMPSEIKKIAKKYMKKDAKHVAIAQNSMTVSSVEQFYYEVKQKNKFESLCKVLS 239

Query: 494 EKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             +          +  V+   S  +    S   +HG M+   + + ++ FK  T   L+A
Sbjct: 240 VDEPTRAIIFCKTKKGVDELVSSMKEKGFSAEGMHGDMTQSHRLNTLNRFKERTIPFLVA 299

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           T V   GIDV D S +I  +      + +H++ GR GR  +  +      P 
Sbjct: 300 TDVAARGIDVKDTSHVINYDLPQDTESYVHRI-GRTGRANKKGTAYTFVTPK 350


>gi|58263430|ref|XP_569125.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108386|ref|XP_777144.1| hypothetical protein CNBB3750 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687070|sp|Q5KME7|PRP5_CRYNE RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|50259829|gb|EAL22497.1| hypothetical protein CNBB3750 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223775|gb|AAW41818.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1072

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 94/449 (20%), Positives = 169/449 (37%), Gaps = 64/449 (14%)

Query: 229 AYDELLAGQIALLLMRKQFKKEI---GIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
              EL+  ++  + +R Q   +         +       I      +PT  Q  AI  I+
Sbjct: 379 EEAELVRLEMDGIKIRGQDAPKPVRNWGAFGLPQGCLDVIKHQGWETPTSIQAQAIPAIM 438

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQH 337
                      I     GSGKT+  L+ M   V          G  AV+M+P   LA Q 
Sbjct: 439 SGRDV------IGIAKTGSGKTVAFLLPMLRHVRDQRPVSGSEGPIAVVMSPTRELASQI 492

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--- 394
           Y+  + + +   I      G    +    A+++     A ++I T     D +       
Sbjct: 493 YKECQPFLKVLNIRASCCVGGSSISEDIAAMKK----GAEVVICTPGRMIDLLTANNGRV 548

Query: 395 --------LILVIVDEQHRFGVQ-QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
                   +++   D     G + Q +K+          ++ +   P+T  + SL    +
Sbjct: 549 TNVRRTTYIVMDEADRMFDMGFEPQVMKIINNVRPSAQKVLFSATFPKT--MESLARRIL 606

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI------EEKKESN 499
            K  E   G    ++V+ P   ID+     +V + +G   +    +I      E K E +
Sbjct: 607 VKPLEITVGG---RSVVAP--EIDQ-----RVEVRDGDTKFTRLLEILGEMGEEHKDEDD 656

Query: 500 FR-----SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           FR        E  + L           A +HG    +D++  + +FKNG   +++AT+V 
Sbjct: 657 FRTLIFVDRQESADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNFKNGDVPIIVATSVA 716

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV +  ++I  +A +     +H+  GR GR     +CI    P   + S   +  L
Sbjct: 717 ARGLDVKELKLVINYDAPNHMEDYVHR-AGRTGRAGNKGTCITFITPEQERFSVDIVRAL 775

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           + ++       +DLK+  +   LG  +SG
Sbjct: 776 EASK---AFIPDDLKKMSD-SFLGKIKSG 800


>gi|283771250|ref|ZP_06344139.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus H19]
 gi|283459455|gb|EFC06548.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 506

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 135/350 (38%), Gaps = 37/350 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L ++ F  PT  Q+ +I   LQ +        + Q   G+GKT    I +   V  + G 
Sbjct: 17  LESMGFKEPTPIQKDSIPYALQGID------ILGQAQTGTGKTGAFGIPLIEKVVGKQGV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q++I+AP   LA Q  E ++++++   + V  + G MP   + KAL++       I++GT
Sbjct: 71  QSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK----GPQIVVGT 126

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +          + LIL   DE    G    ++                   +T
Sbjct: 127 PGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ--------RQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I  + ++   + P     +     D  IE    ++ E +K       ++ 
Sbjct: 179 MLFSATMPKAIQALVQQFM-KSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +      F     R + L     S       +HG ++   +  V+  FKN    +L+AT
Sbjct: 238 HQPELAIIFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|253733085|ref|ZP_04867250.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728993|gb|EES97722.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 517

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/377 (18%), Positives = 141/377 (37%), Gaps = 36/377 (9%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +    ++++   +    + +     Q +       PT  Q+ +I   LQ +        +
Sbjct: 1   MRNKQVKRRIILQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGID------IL 54

Query: 298 LQGDVGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            Q   G+GKT    I +   V  + G Q++I+AP   LA Q  E ++++++   + V  +
Sbjct: 55  GQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTV 114

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFG 407
            G MP   + KAL++       I++GT     D +          + LIL   DE    G
Sbjct: 115 FGGMPIERQIKALKK----GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMG 170

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               ++                   +T++ ++     I  + ++   + P     +    
Sbjct: 171 FIDDMRFIMDKIPAVQ--------RQTMLFSATMPKAIQALVQQFM-KSPKIIKTMNNEM 221

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVERFNSLHEHFTSS---IAII 521
            D  IE    ++ E +K       ++  +      F     R + L     S       +
Sbjct: 222 SDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGL 281

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG ++   +  V+  FKN    +L+AT V   G+D+   S +   +      +  H++ G
Sbjct: 282 HGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRI-G 340

Query: 582 RVGRGEEISSCILLYHP 598
           R GR  +    +   +P
Sbjct: 341 RTGRAGKEGIAVTFVNP 357


>gi|254502530|ref|ZP_05114681.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
 gi|222438601|gb|EEE45280.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
          Length = 430

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 126/354 (35%), Gaps = 27/354 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q+ AI  IL        ++ + Q   G+GKT    + +   + A        G +
Sbjct: 24  APTPIQQKAIPLILDG----QDLMGLAQ--TGTGKTAAFGLPLIERLLAEPRRAAPKGTR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   L  Q  + +  + + T + V  + G +    + K           I++ T 
Sbjct: 78  ALILAPTRELVNQIAKNLISFLKTTPLRVTSVVGGVSINGQVK----RMSKGTDILVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    + L            Q L L        +  + A    +TL+ ++    
Sbjct: 134 GRLLDLVDRNAVDLGSASYLVLDEADQMLDLGFIHALRKIAGLVA-KDRQTLLFSATMPK 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------ 497
            I+++ +      P +  + P+ R  + + +    +    K  ++   + ++ +      
Sbjct: 193 QINELAQSYLT-DPARVEVSPVGRTADKVRQKVHFMDSKAKTGFLIDVLSDQPDDMSLVF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ER          +   IHG  S   +E  +   ++G  K+L+AT V   GID+
Sbjct: 252 CRTKHGAERLMRKMAQAGIAAGSIHGNKSQNQRERAIKELRSGAIKVLVATDVAARGIDI 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              S +          A +H++ GR  R       + L  P           ++
Sbjct: 312 PGVSHVYNFELPEVAEAYVHRI-GRTARAGADGDAVALCAPEEIGLFRQIEKLI 364


>gi|25010852|ref|NP_735247.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae NEM316]
 gi|76786821|ref|YP_329524.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909]
 gi|76799328|ref|ZP_00781491.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 18RS21]
 gi|77406817|ref|ZP_00783849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
 gi|77411327|ref|ZP_00787675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|23095231|emb|CAD46441.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561878|gb|ABA44462.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae A909]
 gi|76585318|gb|EAO61913.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 18RS21]
 gi|77162587|gb|EAO73550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|77174571|gb|EAO77408.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
          Length = 528

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 131/366 (35%), Gaps = 36/366 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     +   +   QA+I+A
Sbjct: 23  EPSPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIHTEDNTIQALIIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ ++  + V  + G      + KAL       AH+++GT     D
Sbjct: 77  PTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRS----GAHVVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT---PIPRTL 435
            I+   L L  +        DE    G        +++       LL +AT   PI R +
Sbjct: 133 LIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLFSATMPDPIKR-I 191

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +  + D +  KI         +    + +   ++     +++  +  +   +  +    
Sbjct: 192 GVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLMDVDQPELSIVFGRT--- 248

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+
Sbjct: 249 -----KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILVATDVAARGL 303

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+   + +   +      + +H++ GR GR  +    I    P          ++ K   
Sbjct: 304 DISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVSPNEMGYLTIIENLTKKRM 362

Query: 616 DGFLIA 621
            G   A
Sbjct: 363 TGMKPA 368


>gi|22536941|ref|NP_687792.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
           2603V/R]
 gi|22533794|gb|AAM99664.1|AE014227_8 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 2603V/R]
          Length = 528

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 131/366 (35%), Gaps = 36/366 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     +   +   QA+I+A
Sbjct: 23  EPSPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIHTEDNTIQALIIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ ++  + V  + G      + KAL       AH+++GT     D
Sbjct: 77  PTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRS----GAHVVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT---PIPRTL 435
            I+   L L  +        DE    G        +++       LL +AT   PI R +
Sbjct: 133 LIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLFSATMPDPIKR-I 191

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +  + D +  KI         +    + +   ++     +++  +  +   +  +    
Sbjct: 192 GVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLMDVDQPELSIVFGRT--- 248

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+
Sbjct: 249 -----KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILVATDVAARGL 303

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+   + +   +      + +H++ GR GR  +    I    P          ++ K   
Sbjct: 304 DISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVSPNEMGYLTIIENLTKKRM 362

Query: 616 DGFLIA 621
            G   A
Sbjct: 363 TGMKPA 368


>gi|228952820|ref|ZP_04114890.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228806863|gb|EEM53412.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 458

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   +++     QA+I+AP 
Sbjct: 29  TPIQEQAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDSESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKLR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 VSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|160897598|ref|YP_001563180.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160363182|gb|ABX34795.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 504

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 126/359 (35%), Gaps = 30/359 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
           S T  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 25  SMTPIQAQAIPVVLTGKDV------MGAAQTGTGKTAAFSLPLLQRLMRHENTSASPARH 78

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   LA Q  + I +Y + T++   ++ G M    +   L++       +++
Sbjct: 79  PVRALVLLPTRELADQVAQQIAQYAKYTKLRSTVVFGGMDMKPQTLELKK----GVEVLV 134

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D I+    +L  V E        R+           +L        TL+ ++ 
Sbjct: 135 ATPGRLLDHIEAKNAVLNQV-EYVVLDEADRMLDIGFLPDLQRILSHLPKTRTTLLFSAT 193

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
              +I ++      + P+   +   N     +E+    +S+  K Y +   ++++     
Sbjct: 194 FSPEIKRLASSYL-QDPVTIEVARPNETASTVEQRFYSVSDDDKRYALRSLLKQRDIRQA 252

Query: 499 ----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +    R     E        +HG  S  ++   +++FK G   LL+ T V   G
Sbjct: 253 FVFSNSKLGCARLTRALERDGLRATALHGDKSQDERLKALEAFKRGEVDLLVCTDVAARG 312

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           +D+ D   +   +        +H++ GR GR       + L     ++       ++K 
Sbjct: 313 LDIKDVPAVFNYDVPFNAEDYVHRI-GRTGRAGASGIAVTLVTNHDARLVGEIEKLIKK 370


>gi|327403899|ref|YP_004344737.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327319407|gb|AEA43899.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 375

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 136/387 (35%), Gaps = 53/387 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           L+ + ++ PT  QE +I  +LQ                G+GKT    + +   ++  GQ 
Sbjct: 16  LKELEYTTPTPIQEQSIPSLLQGKD------LFGCAQTGTGKTAAFALPILQHLDPDGQV 69

Query: 325 --------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                   +++AP   LA Q  +  K Y +++++   +I G + Q  +   L    +   
Sbjct: 70  KGKRPIRCLVLAPTRELANQINDSFKSYGKHSKLRSMVIFGGVNQNKQVNQL----NAGI 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLM 426
            I++ T     D      IQ  K+   ++DE  R      +   +K           +  
Sbjct: 126 DILVATPGRLLDLMNQGHIQLSKITHFVLDEADRMLDMGFIHDIKKILPRLPKNKQNIFF 185

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +AT  P  + L      D            P+   + P++   E++E+    + +  K  
Sbjct: 186 SATISPTIMELAGTILFD------------PVNVRVTPVSSTAEIVEQFVYYVEKADKRN 233

Query: 487 WICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           ++   I+ +  S+       +   +R              IHG  S   +E  +  FKN 
Sbjct: 234 FLKQLIKTENISHAIVFTRTKHGADRVARELTKSGLKAEAIHGDKSQNARERALAGFKNR 293

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
           T   LIAT +   GID+     +I           +H++ GR GR         L     
Sbjct: 294 TVSFLIATDIASRGIDIDLLEYVINFEIPEVAETYVHRI-GRTGRAGASGIAYTLCSSEE 352

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
                    ++        I E  LK+
Sbjct: 353 KAYLKAIQKLINQ-----QIPERTLKK 374


>gi|227548399|ref|ZP_03978448.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079443|gb|EEI17406.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 683

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 133/375 (35%), Gaps = 36/375 (9%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
           + + F  P+  Q   I  +++          +     G+GKT    + + + ++      
Sbjct: 120 KMVGFEQPSPIQAETIPLLMEGRDV------VGLAQTGTGKTAAFALPVLSQIDPQLRHP 173

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+++AP   LA Q  +  + +  +   I V  I G      +   L R     A II+G
Sbjct: 174 QALVLAPTRELALQVADSFQSFADHLGKIQVLPIYGGQAYGIQLSGLRR----GAQIIVG 229

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D ++           L+L   DE    G Q+ +   L        V L +AT  
Sbjct: 230 TPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPNTKQVALFSATMP 289

Query: 432 --PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              R +    L D     +  +      I    +     +++    +++     +A  + 
Sbjct: 290 NGIRKISKQYLNDPAEVTVKSETRTNTNITQRYLFTAHRNKLDAITRILEVTEFEAMIVF 349

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +   E           S A I+G ++   +E  +D  ++G   +L+AT 
Sbjct: 350 VRT--------KHETEELAEKLRARGFSAAAINGDIAQQQRERTVDQLRDGRLDILVATD 401

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV   S +   +  +   + +H++ GR GR       IL   P   +   +   
Sbjct: 402 VAARGLDVERISHVFNYDIPNDIESYVHRI-GRTGRAGRTGEAILFVTPRERRMLRSIER 460

Query: 610 VLKNTEDGFLIAEED 624
           V   T +   +   D
Sbjct: 461 VTNATIEEMELPTVD 475


>gi|222098932|ref|YP_002532990.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|229199584|ref|ZP_04326245.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1293]
 gi|221242991|gb|ACM15701.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|228583989|gb|EEK42146.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1293]
          Length = 481

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/363 (22%), Positives = 136/363 (37%), Gaps = 39/363 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           PT+ Q   I   LQ      +   +++   GSGKT    I +   VE      QA+++ P
Sbjct: 27  PTEVQGKVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWAENKPQALVLTP 80

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I    +  +I    I G  P A ++  L++    + HI++GT     D 
Sbjct: 81  TRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDH 136

Query: 390 IQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLTS 439
           I+           L++   DE    G   ++   + +  T    +L +AT       L+ 
Sbjct: 137 IEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTMLFSATLPEDVERLSR 196

Query: 440 LGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                 + I  K AG     I+  +      +++     V   E   +  I  + +E  +
Sbjct: 197 TYMNAPTHIEIKAAGITTDKIEHTLFEAIEDEKLSLLKDVTTIENPDSCIIFCRTQENVD 256

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             +R          +        IHG M   D+  VMD F+ G  + L+AT V   GID+
Sbjct: 257 HVYRQ--------LKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDI 308

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            + + +I  +      + +H+  GR GR       I    P  ++        +     G
Sbjct: 309 DNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENRFLEEIEEYI-----G 362

Query: 618 FLI 620
           F I
Sbjct: 363 FEI 365


>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
          Length = 499

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 128/349 (36%), Gaps = 35/349 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           +  + F   T  Q   I   L+          I Q   G+GKT    I +   ++     
Sbjct: 17  INRMGFEEATPIQAGTIPLSLEGKD------IIGQAQTGTGKTAAFGIPLVEKIDTKNTN 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +I+AP   LA Q  E + K   + ++ V  + G      + +A+++      HII+G
Sbjct: 71  VQGLIIAPTRELAIQVSEELYKVGYDKRVRVLAVYGGQDINRQIRAMKK----GPHIIVG 126

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-P 430
           T     D I    L L  V        DE    G    +   L         LL +AT P
Sbjct: 127 TPGRLLDHINRRTLKLDQVHTLVLDEADEMLNMGFIDDIESILKNVPEGRQTLLFSATMP 186

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + + +  K+  K      I    +     ++     +++ ++  +   + 
Sbjct: 187 GPIRKIAENFMTNPETVKVKSKEMTVSLIDQYFVKAQEREKFDILARLLDTQSPELAIVF 246

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +  V+  +            IHG +S   + SV+  FK G  ++L+AT 
Sbjct: 247 GRT--------KRRVDELSKALSIRGYQAEGIHGDLSQAKRSSVLRKFKEGRIEVLVATD 298

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           V   G+D+   + +   +      + +H++ GR GR  +    +    P
Sbjct: 299 VAARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKEGMAMTFVTP 346


>gi|164687249|ref|ZP_02211277.1| hypothetical protein CLOBAR_00890 [Clostridium bartlettii DSM
           16795]
 gi|164603673|gb|EDQ97138.1| hypothetical protein CLOBAR_00890 [Clostridium bartlettii DSM
           16795]
          Length = 371

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/356 (19%), Positives = 125/356 (35%), Gaps = 34/356 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +PT  QE +I  I      KN    + Q   G+GKTL  LI +  ++       Q +I+A
Sbjct: 23  TPTPIQEESILHI------KNNKDILAQSQTGTGKTLAFLIPIFDSISPKNQNIQTLILA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q Y   +K  ++  I V    G      +   L+R       ++I T     D
Sbjct: 77  PTRELAIQIYNEAEKLNKDKNINVLAAYGGKDIKSQLNKLKR----NIQLVIATPGRLLD 132

Query: 389 SIQYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--LV 436
            +            L+L   D+    G +  +   + +       L  +AT   +   L 
Sbjct: 133 HLDRKSIDLSKLNTLVLDEADQMILMGFKNEIEAIIKETNKKRQTLCFSATLDSQVKKLA 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              + D     I  K    + IK  ++      +     KV+  +      I  +     
Sbjct: 193 YRYMKDPVEVTIKSKEITLETIKQEVVETTDRHKQEALCKVLDEDNPFMAIIFCRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+  +        +   +H  +    +E ++ SF+    + LIAT V   G+D
Sbjct: 249 ----KRRVDALDEALAVKGYNCEKLHSDIPQAKRERIIKSFRKADLQYLIATDVASRGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +   + I   +        +H++ GR GR        +   P  +K      S +K
Sbjct: 305 ITGITHIYNYDIPETSEDYIHRI-GRTGRIGNDGYTCMFVDPKNTKTLEKIESDIK 359


>gi|322818320|gb|EFZ25769.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 631

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/381 (18%), Positives = 140/381 (36%), Gaps = 36/381 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+  I  +L           +     GSGKT   LI + +++ +           
Sbjct: 153 KPTPVQKYGIPVVLCGHD------LMACAQTGSGKTAAYLIPLVSSILSNVTPNHQGQGS 206

Query: 324 -----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A++MAP   L+ Q +E  +K+T  T I   ++ G     H+   L R       +
Sbjct: 207 RSSPAALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADPRHQVHELSR----GCGL 262

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T     D      + +  +  +++DE  R          +         M      +
Sbjct: 263 LVATPGRLWDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIRMIVQGQESDMPPPGQRQ 322

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++    +I ++  +    +     +  +    E I +    + +  K   +   + 
Sbjct: 323 TLLYSATFPTEIQQLA-REFLHRHYFLQVGRVGSTTENITQDVRWVEDNDKREHLLRILH 381

Query: 494 EKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           E +          +   +       +   + A IHG     ++E  +  FK+ +C++L+A
Sbjct: 382 ENQNQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMFKSASCQVLVA 441

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+ D SI+I  +        +H++ GR GR  ++   I  ++          
Sbjct: 442 TDVASRGLDIPDVSIVIQYDMPSNIDDYVHRI-GRTGRAGKVGRAISFFNEKNRNIVDDL 500

Query: 608 LSVLKNTEDGFLIAEEDLKQR 628
           + +L  T    L    DL +R
Sbjct: 501 VPLLNETHQNVLQQIMDLTKR 521


>gi|319642286|ref|ZP_07996945.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_40A]
 gi|317386142|gb|EFV67062.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_40A]
          Length = 422

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 132/344 (38%), Gaps = 34/344 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQAVI 326
           +PT  QE AI  +L+          +     G+GKT    I +   +     + G +A+I
Sbjct: 11  TPTPIQEQAIPVLLKGKD------LLGCAQTGTGKTAAFAIPLIQRLYQSDHKKGIKALI 64

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   +Y   T +   +I G +PQ  +  AL+R       ++I T    
Sbjct: 65  LTPTRELAIQIGENFDQYAGYTGVKHAVIFGGVPQKAQVDALKR----GVQVLIATPGRL 120

Query: 387 QD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            D      I    L   ++DE  R      +   +K      +L       +TL  ++  
Sbjct: 121 LDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKK------VLKLIPARRQTLFFSATM 174

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC-----PQIEE-K 495
             +I K+ +      P K  + P++   + I +    + + +K   +      P+IE   
Sbjct: 175 PSEIEKLADS-MLTNPEKIEVTPVSSTVDTIRQSVYFVEKKEKKDLLLHLLKNPEIESVL 233

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  +   ++   +          IHG  S   ++  + +FK+ T ++LIAT +   GI
Sbjct: 234 IFTRTKHGADKLARILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDIAARGI 293

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV   S +I     +     +H++ GR GR       I      
Sbjct: 294 DVNQLSHVINYELPNISETYVHRI-GRTGRAGHDGIAISFCESE 336


>gi|317477122|ref|ZP_07936363.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906665|gb|EFV28378.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 392

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 155/414 (37%), Gaps = 40/414 (9%)

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQ 290
                  + + L   +        +N+   I + I      +PT  Q  AI  +L     
Sbjct: 2   KRAQIILMLMFLAYSKTTFMTFKDLNITESILKAIEEKGYVNPTPIQAKAIPALLVGKD- 60

Query: 291 KNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIMAPIGILAQQHYEFIKKY 344
                 +     G+GKT    I +   ++A        +A+I+ P   LA Q  E I  Y
Sbjct: 61  -----ILGCAQTGTGKTAAFAIPIIQQLQADRNLNKSIKALILTPTRELALQISECIDDY 115

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVI 399
            + TQ+   +I G + Q  +   L +       I++ T     D      ++   +   +
Sbjct: 116 ARYTQVCHGVIFGGVNQRTQVNMLHK----GVDILVATPGRLLDLMNQGYVRLNNIQHFV 171

Query: 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIK 459
           +DE  R      +   +       LL       +TL+ ++     I  +T     ++P+K
Sbjct: 172 LDEADRMLDMGFIHDIK------RLLPKLPKEKQTLLFSATMPDTIISLTNS-LLKQPVK 224

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEH 513
             I P +   + IE+    + + +K+  +   + + +          +   +R   +   
Sbjct: 225 ISITPKSSTVDAIEQTVYFVEKKEKSKLLISILHKTQGQSVLVFSRTKHNADRIVRVLGK 284

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  IHG  S   ++S +++FK+G  +++IAT +   GID+ +  ++I  +      
Sbjct: 285 AGIGSQAIHGNKSQNARQSALENFKSGKIRVMIATDIAARGIDINELPLVINYDLPDVPE 344

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
             +H++ GR GR     + +       S+     ++ ++    G  ++  +L  
Sbjct: 345 TYVHRI-GRTGRAGNSGTALSFC----SQEERKLVNDIQKLT-GKKLSRAELAI 392


>gi|229069971|ref|ZP_04203249.1| ATP-dependent RNA helicase [Bacillus cereus F65185]
 gi|228713171|gb|EEL65068.1| ATP-dependent RNA helicase [Bacillus cereus F65185]
          Length = 458

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 133/348 (38%), Gaps = 23/348 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  QE AI  I+           I Q   G+GKTL  ++ +   +++     QA+I+AP 
Sbjct: 29  TPIQEQAIPVIMSGKD------IIGQAKTGTGKTLAFVLPILEKIDSESSDVQALIVAPT 82

Query: 331 GILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    IKK   Q   I V  I G    A + + L     G  HI++ T     D 
Sbjct: 83  RELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL----KGNTHIVVATPGRLLDH 138

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  +         Q L          +L  T     +T++ ++    DI K+ 
Sbjct: 139 IRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET-PGSKQTMLFSATMPKDIKKLA 197

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK---AYWICPQIEEKKESNFRSVVER 506
           ++    +P    +       + IE+  +  ++  K     ++  + +      F     R
Sbjct: 198 KRYMD-EPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKLR 256

Query: 507 FNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            + L+++      + A +HG +    +E VM SF+    + LIAT V   G+DV   + +
Sbjct: 257 VSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHV 316

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              +      + +H++ GR GR       I        K+       L
Sbjct: 317 FNFDIPEDVESYIHRI-GRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363


>gi|295662382|ref|XP_002791745.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides brasiliensis
           Pb01]
 gi|226279871|gb|EEH35437.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides brasiliensis
           Pb01]
          Length = 547

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 136/367 (37%), Gaps = 43/367 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q       L           +   + GSGKTL   +     + A        G   
Sbjct: 152 PTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIV 205

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T  
Sbjct: 206 LVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDLTR----GVEVCIATPG 261

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP-- 432
              D ++  +        L+L   D     G + +++    Q        + +AT     
Sbjct: 262 RLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMWSATWPKDV 321

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIP----INRIDEVIERLKVVLSEGKKAYWI 488
           R L    L D     I           T I+       + + + + L+ ++ +      I
Sbjct: 322 RQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRERMAKHLERIMDDKNAKILI 381

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       R   +    L +    +++I HG     +++ V++ FK G   +++AT
Sbjct: 382 FT-------GTKRVADDITRFLRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVAT 433

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV D + ++  +  +     +H++ GR GR     + I L+    +K +   +
Sbjct: 434 DVASRGIDVRDITHVLNYDYPNNSEDYVHRI-GRTGRAGAKGTAITLFTTDNAKQARDLV 492

Query: 609 SVLKNTE 615
           ++L  ++
Sbjct: 493 AILNESK 499


>gi|89896500|ref|YP_519987.1| hypothetical protein DSY3754 [Desulfitobacterium hafniense Y51]
 gi|89335948|dbj|BAE85543.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 478

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 142/372 (38%), Gaps = 31/372 (8%)

Query: 260 KIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
              QK L    +S  T  Q  AI  +L+ +        +     G+GKT    I +  ++
Sbjct: 63  NPIQKALAAQGYSEATPIQAEAIPHLLEGLD------LLGCAQTGTGKTAAFAIPILQSL 116

Query: 319 EAGG---------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
             G          +A+++AP   LA Q  E    Y  N  +   +I G + QA + + LE
Sbjct: 117 AMGQGLLKGKRQIRALVLAPTRELATQIAESFTAYGVNLPLRTLVIFGGVGQAPQTRKLE 176

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           +       I++ T     D I    + L  V+        Q L +        ++     
Sbjct: 177 K----GIDILVATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYL-P 231

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA---- 485
              + ++ ++   ++I K+ +    + P+K  + P     ++IE+    + +  KA    
Sbjct: 232 RERQNMLFSATMPVEIEKLADT-ILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAALLT 290

Query: 486 YWICPQIEEKKESNFRSVV---ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           YW+     +      R+     +    L++   +++AI HG  S  ++E  + +FK    
Sbjct: 291 YWLKNNEYDSVLVFSRTKHGADKIVKELNKKGFTAVAI-HGNKSQANREQALHAFKKRKT 349

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+AT +   G+D+ + S +I  N        +H++ GR GR       I         
Sbjct: 350 RILVATDIAARGLDIQELSHVINYNLPEVPETYIHRI-GRTGRAGLGGKAITFCDFEEKP 408

Query: 603 NSYTRLSVLKNT 614
                   +  T
Sbjct: 409 LLRDIQKRIGKT 420


>gi|19528517|gb|AAL90373.1| RE50350p [Drosophila melanogaster]
          Length = 399

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/389 (19%), Positives = 141/389 (36%), Gaps = 37/389 (9%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            +N++ ++ + I       P+  Q+ +I  I++          I Q   G+GKT    I+
Sbjct: 30  AMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDV------IAQAQSGTGKTATFSIS 83

Query: 314 MAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           +  +++      Q + ++P   LA Q  + I        +   +  G        + L+ 
Sbjct: 84  ILQSLDTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDY 143

Query: 371 IAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKL--TQKATA 420
                 HI+ GT     D I+           L+L   DE    G ++++         A
Sbjct: 144 GQ----HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 199

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVV 478
             V+L++AT     L +TS    D  +I  K      + IK   + + R +   + L  +
Sbjct: 200 TQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 259

Query: 479 LSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
                  +A   C           +  V+           +++ +HG M   +++ +M  
Sbjct: 260 YDTLTITQAVIFCNT---------KRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKE 310

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G  ++LI T V   GIDV   S++I  +  +     +H++ GR GR       I   
Sbjct: 311 FRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFV 369

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
                +             D   +   DL
Sbjct: 370 KSDDIRILRDIEQYYSTQIDEMPVNVADL 398


>gi|157963312|ref|YP_001503346.1| ATP-dependent RNA helicase DbpA [Shewanella pealeana ATCC 700345]
 gi|157848312|gb|ABV88811.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 469

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/440 (18%), Positives = 159/440 (36%), Gaps = 63/440 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           S T  Q  ++  IL           I QG  GSGKT    + +   ++      Q +++ 
Sbjct: 34  SMTPIQAQSLPAILNGEDV------IGQGKTGSGKTAAFGLGLLHKLDVKRFRIQCLVLC 87

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+   +    I V  + G +P   +  +LE      AHII+GT     
Sbjct: 88  PTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEH----GAHIIVGTPGRII 143

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D +   +L L  V        D     G Q  L+                   +TL+ ++
Sbjct: 144 DHLDRGRLDLENVHTLVLDEADRMLEMGFQVELEGIMDRMPIE---------RQTLLFSA 194

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                I  I +K    KP+   +   +    + +    V +   +   +   + + +   
Sbjct: 195 TFPEQIQSIADK-IMFKPVLVKVASTHATSTIEQHFYEVGNNNDRMRALKLLLLQYRPES 253

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N +   +   +  ++   S+  +HG +   D++  +  F N +  +++AT V   
Sbjct: 254 AVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVATDVAAR 313

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL-- 611
           G+D+     +I  +  +     +H++ GR GR     S    Y+             L  
Sbjct: 314 GLDIDALDAVINYHVAYDTEVHIHRI-GRTGRAGSKGSAHTFYNDEDGYKIALLEDYLER 372

Query: 612 ---------KNTEDGFLIA--EEDLKQ-------RKEGEILG--IKQSGMPKFLIAQPEL 651
                    ++  D F +      L+         + G+ILG    ++G+    + + ++
Sbjct: 373 DIVNEALPSEHLLDTFPVQPVMITLQIDGGKKQKLRPGDILGALTGENGIEGSEVGKIKI 432

Query: 652 HD--SLLEIARKDAKHILTQ 669
            D  + + + RK AK  L +
Sbjct: 433 TDMRAYVAVNRKVAKKALQK 452


>gi|58038579|ref|YP_190543.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58000993|gb|AAW59887.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 793

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/386 (17%), Positives = 138/386 (35%), Gaps = 41/386 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   + +  + +  PT  Q  AI ++L+          +     G+GKT    + M   
Sbjct: 299 SEPIMRAIEELGYEHPTPIQAQAIPEVLKGHDV------LGVAQTGTGKTASFTLPMLQK 352

Query: 318 VEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           +          +++I+ P   LA Q  E  K Y +  ++   ++ G    A +R  L R 
Sbjct: 353 LAGSRARARMPRSLILEPTRELALQVAENFKLYGKYLRLTHALLIGGESMAEQRDVLNR- 411

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLM 426
                 ++I T     D      L+L       +DE  R      +   +K      ++ 
Sbjct: 412 ---GVDVLIATPGRLLDLFGRGGLLLTQTSTLVIDEADRMLDMGFIPDIEK------IVA 462

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +TL  ++    +I ++ +      P++  +   + +   IE   V++ E +K  
Sbjct: 463 LLPAHRQTLFFSATMAPEIRRLADAFLRH-PVEITVSRQSSVATTIEEALVIVPEDEKRR 521

Query: 487 WICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +   +  +         N +  V+               +HG ++   + S ++ F++G
Sbjct: 522 TLKKLLRRENVQSAIVFCNRKRDVDMIQQYLTKHDIEAGHLHGDLAQSLRFSTLERFRSG 581

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K L+ + V   GID+   S +   +        +H++ GR GR         L  P  
Sbjct: 582 ELKFLVCSDVAARGIDIGGLSHVFNYDLPFNAEDYVHRI-GRTGRAGNEGHAFSLATPRD 640

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLK 626
                  L  +  T  G +IA   L+
Sbjct: 641 ----RRLLEAI-ETLTGKVIARPVLE 661


>gi|302333727|gb|ADL23920.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 506

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 135/350 (38%), Gaps = 37/350 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L ++ F  PT  Q+ +I   LQ +        + Q   G+GKT    I +   V  + G 
Sbjct: 17  LESMGFKEPTPIQKDSIPYALQGID------ILGQAQTGTGKTGAFGIPLIEKVVGKQGV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q++I+AP   LA Q  E ++++++   + V  + G MP   + KAL++       I++GT
Sbjct: 71  QSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK----GPQIVVGT 126

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +          + LIL   DE    G    ++                   +T
Sbjct: 127 PGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ--------RQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I  + ++   + P     +     D  IE    ++ E +K       ++ 
Sbjct: 179 MLFSATMPKAIQALVQQFM-KSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +      F     R + L     S       +HG ++   +  V+  FKN    +L+AT
Sbjct: 238 HQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|253731082|ref|ZP_04865247.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|297210100|ref|ZP_06926493.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300910462|ref|ZP_07127914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304379262|ref|ZP_07362001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|253725209|gb|EES93938.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|296885300|gb|EFH24240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300888304|gb|EFK83495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304342121|gb|EFM08021.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312437505|gb|ADQ76576.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|320140748|gb|EFW32600.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143723|gb|EFW35500.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 517

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/377 (18%), Positives = 141/377 (37%), Gaps = 36/377 (9%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +    ++++   +    + +     Q +       PT  Q+ +I   LQ +        +
Sbjct: 1   MRNKQVKRRIILQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGID------IL 54

Query: 298 LQGDVGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            Q   G+GKT    I +   V  + G Q++I+AP   LA Q  E ++++++   + V  +
Sbjct: 55  GQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTV 114

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFG 407
            G MP   + KAL++       I++GT     D +          + LIL   DE    G
Sbjct: 115 FGGMPIERQIKALKK----GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMG 170

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               ++                   +T++ ++     I  + ++   + P     +    
Sbjct: 171 FIDDMRFIMDKIPAVQ--------RQTMLFSATMPKAIQALVQQFM-KSPKIIKTMNNEM 221

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVERFNSLHEHFTSS---IAII 521
            D  IE    ++ E +K       ++  +      F     R + L     S       +
Sbjct: 222 SDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGL 281

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG ++   +  V+  FKN    +L+AT V   G+D+   S +   +      +  H++ G
Sbjct: 282 HGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRI-G 340

Query: 582 RVGRGEEISSCILLYHP 598
           R GR  +    +   +P
Sbjct: 341 RTGRAGKEGIAVTFVNP 357


>gi|313633504|gb|EFS00323.1| ATP-dependent RNA helicase DbpA [Listeria seeligeri FSL N1-067]
 gi|313638189|gb|EFS03441.1| ATP-dependent RNA helicase DbpA [Listeria seeligeri FSL S4-171]
          Length = 470

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 131/370 (35%), Gaps = 38/370 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  ++ +  + +   T  Q+  I   L           + +   GSGKT    I +A  
Sbjct: 7   SEEIKRAINELGYKEATPVQKEVIPVALTGKD------IVAKSQTGSGKTAAFAIPIAEQ 60

Query: 318 V---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           V   E   QA+I+ P   L  Q         +  +I    I G  P A ++  L +    
Sbjct: 61  VIWEENKPQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKN-- 118

Query: 375 QAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
             HI++GT     D I+   L        +L  VDE    G   ++   L         L
Sbjct: 119 --HIVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNL 176

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             +AT       L      D   I        PI  + +     ++ ++   V+++E   
Sbjct: 177 FFSATMPDEMQDLIKRYQEDPVVIEMAAEKTNPITHIEMQTENKEKTLQD--VLITENPD 234

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +  I    + +            + L +    + A IHG +   ++   MD FK+G  + 
Sbjct: 235 SAIIFCNTKNQ-----------VDELSDLLQVNAAKIHGGLRQEERFRAMDDFKSGKSRF 283

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   GIDV + +++I  +        +H++ GR GR       I       +   
Sbjct: 284 LIATDVAGRGIDVENVTLVINYDLPIEKENYVHRI-GRTGRAGNSGKAISFVKTNENPLL 342

Query: 605 YTRLSVLKNT 614
                +L  T
Sbjct: 343 RDIEDMLNIT 352


>gi|114706869|ref|ZP_01439769.1| Superfamily II DNA and RNA helicase [Fulvimarina pelagi HTCC2506]
 gi|114537817|gb|EAU40941.1| Superfamily II DNA and RNA helicase [Fulvimarina pelagi HTCC2506]
          Length = 457

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/350 (20%), Positives = 129/350 (36%), Gaps = 43/350 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GG------Q 323
           +PT  QE AI   L        ML I Q   G+GKT    + +   +    G       +
Sbjct: 26  TPTPIQERAIPHALAG----RDMLGIAQ--TGTGKTAAFALPLLHHLMTVGGKPTTRTTK 79

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I++P   LA Q  E I   ++ T I   ++ G +    + +AL R       I++ T 
Sbjct: 80  ALILSPTRELAVQIAESIADLSEGTPISHCVVFGGVSVRPQIQALAR----GVDILVATP 135

Query: 384 ALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D ++           LIL   D     G  + +                    +++
Sbjct: 136 GRLLDLMEQRAIDLRETRHLILDEADRMLDMGFVRDVMKIVGKCPDD---------RQSM 186

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I  +++K     P K  + P     E I +    + +  K +W+   + + 
Sbjct: 187 MFSATMPKPIEDLSKK-ILTNPQKVSVTPAVVTVEKIAQSVFSVPQRAKKHWLIDFVSKN 245

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   +  +    R  S  +        IHG  S   ++  + +F++G   +L+AT 
Sbjct: 246 DTGRIVVFTRTKHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQDGEIDVLVATD 305

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           ++  GI V D S ++  +      + +H++ GR  R       I L  P 
Sbjct: 306 IVARGIHVDDISHVVNFDLPEEPESYVHRI-GRTARAGRSGQAIALVDPS 354


>gi|330842567|ref|XP_003293247.1| hypothetical protein DICPUDRAFT_41749 [Dictyostelium purpureum]
 gi|325076448|gb|EGC30233.1| hypothetical protein DICPUDRAFT_41749 [Dictyostelium purpureum]
          Length = 551

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 131/368 (35%), Gaps = 45/368 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q+ AI   L           I     GSGKT   +      +          G  
Sbjct: 130 TPTPIQKQAIPIALSGRD------LIAIAKTGSGKTATFIWPSIPHIMDQPYLEKGDGPI 183

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+ +AP   LAQQ Y    KY++  ++   ++ G + +  + K L+        I++ T 
Sbjct: 184 ALFLAPTRELAQQIYLETLKYSKYFKLRTTVLYGGVSKQQQCKELKAGCE----IVVSTP 239

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQK-ATAPHVLLMTATPIP- 432
               D I+           L+L   D+   FG   Q L +          LL +AT    
Sbjct: 240 GRLIDMIKLKATKLNRVTYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSATFKQN 299

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVI----IPINRIDEVIERLKVVLSEGKKAYW 487
                 + L D     I +  +    I  ++        +   +I+ L  +L++G    +
Sbjct: 300 VEDFARSILTDPIKISIGQAGSANSDITQIVQVLKSESEKWSWLIDNLPNLLNQGSVLIF 359

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +          + ++ VE  +    +F      IHG  +  ++   + +FK G   +LIA
Sbjct: 360 V----------SMKASVEELSKNLTNFGFKTCSIHGDKNQYERSQTIQTFKEGKVNILIA 409

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+     +I  +      +  H++ GR GR         L  P     +   
Sbjct: 410 TDVAARGLDIPLIKNVINFDPSRDIESHTHRI-GRTGRAGAKGDAYTLITPKDVNFAADL 468

Query: 608 LSVLKNTE 615
           +  L+   
Sbjct: 469 VKNLEGAN 476


>gi|317488345|ref|ZP_07946905.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|325830722|ref|ZP_08164106.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
 gi|316912552|gb|EFV34101.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|325487129|gb|EGC89572.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
          Length = 443

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 128/365 (35%), Gaps = 37/365 (10%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EA 320
             + F+ PT  QE AI  +L+          +     G+GKT    + +   +       
Sbjct: 48  ERMGFTAPTPVQEQAIPLVLEGRDV------VAAATTGTGKTAAFALPLFERIGRAKRPG 101

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A++++P   LAQQ      +  + +   +  + G      +   L+R       +++
Sbjct: 102 SPRALVVSPTRELAQQIDAACTQLAKASNRRMLTVMGGTKYKGQIAKLDR----GIDVLV 157

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQ--QRLKLTQKATAPHVLLMTATP 430
            T     D ++           L+L   D     G     +  +    ++   LL +AT 
Sbjct: 158 ATPGRLYDLMERGVVKLRDVEVLVLDEADRMLDMGFWPTMKKVVAATPSSRQTLLFSATL 217

Query: 431 IPRTL--VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
             + +  V + L D    +++ K      I   +IP+  + +      V+   G K   +
Sbjct: 218 DRKVMQSVSSILKDPAFVEVSHKGETADTIDQFMIPVGPMKKPELLRLVLQQRGSKRVIV 277

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     + ++  E      +        IH   + + ++  ++ F  G   +L+AT
Sbjct: 278 FT--------DTKTRAEICTGQLKRAGFRADSIHSDKTQVQRKRALEGFSKGAIDVLVAT 329

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V+  GIDV +   ++  +        +H++ GR GR  E    I    P          
Sbjct: 330 DVLARGIDVSNIEYVVNYDLPESPEDYVHRI-GRTGRAGETGYAISFVSPEAKAQLLDIE 388

Query: 609 SVLKN 613
            +L  
Sbjct: 389 KLLGE 393


>gi|171693103|ref|XP_001911476.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946500|emb|CAP73301.1| unnamed protein product [Podospora anserina S mat+]
          Length = 488

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 136 SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 189

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+       HI+ GT     D
Sbjct: 190 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HIVSGTPGRVAD 245

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 246 MIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLP---------PATQVVVVSAT 296

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 297 LPHDVLTMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQ 355

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 356 AVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWAR 415

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 416 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTTE 460


>gi|293395719|ref|ZP_06640001.1| ATP-independent RNA helicase DbpA [Serratia odorifera DSM 4582]
 gi|291421656|gb|EFE94903.1| ATP-independent RNA helicase DbpA [Serratia odorifera DSM 4582]
          Length = 445

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/455 (18%), Positives = 174/455 (38%), Gaps = 50/455 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + ++  T  Q +A+  IL     +       +   GSGKT    I +   +      
Sbjct: 4   LNELGYAEMTPVQAAALPAILNGQDVR------AKAKTGSGKTAAFGIGLLDKINVSQVA 57

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+ P   LA Q  + +++  + TQ I +  + G  P   +  +L        HI++
Sbjct: 58  TQALILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGAQLDSLVHA----PHIVV 113

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L+L  V +        R+     A     ++    P  +TL+ ++ 
Sbjct: 114 GTPGRIQEHLRKKTLVLDEV-KVLVLDEADRMLDMGFADDIDQVISYTPPQRQTLLFSAT 172

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I +I+++   ++   +V +        I +     +  ++   +   I   +    
Sbjct: 173 YPAGIERISDRV--QRAPLSVEVDDGDAPTTIAQRFYETTRDQRPALLVAAIRHFQPTSC 230

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +      E    S+  +HG +   D++ V+  F N +C++L+AT V   G
Sbjct: 231 VVFCNTKRDCQSVFEALEARGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARG 290

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL--- 611
           +D+ D  +++           +H++ GR GR       I L  P     ++     L   
Sbjct: 291 LDIKDLELVVNYELSFDPEVHVHRI-GRTGRAGMSGLAISLCAPQEMTRAHALEEYLDCK 349

Query: 612 -----KNTEDGFLIAEEDLKQ--------RK----EGEILG--IKQSGMPKFLIAQPELH 652
                 +   G   A  + +         RK     G+ILG    ++G+    + + ++ 
Sbjct: 350 LQWASVSELSGASTAPLEAEMATLCIDGGRKAKIRPGDILGALTGEAGLTAAEVGKIDMF 409

Query: 653 --DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
              + + I +  A+  L Q      ++G+S +  L
Sbjct: 410 PVHAYVAIRKASARKALQQL-QQGKIKGKSCKARL 443


>gi|257064977|ref|YP_003144649.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM
           20476]
 gi|256792630|gb|ACV23300.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM
           20476]
          Length = 657

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 122/359 (33%), Gaps = 36/359 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----AGGQAVI 326
            PT  Q+ AI  +L+          I     G+GKT    +     +       G   VI
Sbjct: 29  EPTPIQQQAIPVVLEGRD------LIAAAKTGTGKTAAFALPTMDKLPYAGKGEGPVMVI 82

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  +   + T   V  + G +    + K L         III T    
Sbjct: 83  VTPTRELAMQISEVCETIAKRTNHRVVTLLGGVSYTPQIKKLRS----GCDIIIATPGRL 138

Query: 387 QDSIQYYK--------LILVIVDEQHRFGVQQR--LKLTQKATAPHVLLMTATPIPRT-- 434
            D ++ ++        L+L   D     G   +    +    +    LL +AT       
Sbjct: 139 LDLMRQHEADLDLVQVLVLDEADRMLDMGFWPQVSEIVDATPSERQTLLFSATIDRSQDK 198

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ + L   +I +I+ +      +   II   R ++       +  +G     +  + + 
Sbjct: 199 VMFSLLNHPEIIEISHRGDTADLVDQYIIWTGRREKPALLNAFIREKGGFRVIVFTKTKG 258

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             ++  R + +               IH   S   ++  ++ F+ G   +++AT V+  G
Sbjct: 259 GADNCTRRLCK--------IGIGAEAIHADRSQAQRQRALERFREGKTHVIVATDVLARG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           IDV +   ++  +        +H++ GR GR       +    P       +    +  
Sbjct: 311 IDVPEVDYVVNYDLPMMPEDYVHRI-GRTGRAGVAGYAVSFVTPDTKNLLRSIQKFIGE 368


>gi|164656240|ref|XP_001729248.1| hypothetical protein MGL_3715 [Malassezia globosa CBS 7966]
 gi|159103138|gb|EDP42034.1| hypothetical protein MGL_3715 [Malassezia globosa CBS 7966]
          Length = 885

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/416 (15%), Positives = 154/416 (37%), Gaps = 46/416 (11%)

Query: 229 AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKI--LRNIPF-SPTKSQESAIKDIL 285
           A  E L  ++  + +R +         +  G     +  ++ + + +PT  Q  AI  I+
Sbjct: 229 ADAERLRVELDAMSVRGKHCPTPITKWSHCGLPVNCLDVIKKLGYVAPTPIQSQAIPAIM 288

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQH 337
                      I     GSGKT+  L+ M   V+         G  A++M P   LA Q 
Sbjct: 289 SGRD------MIGVAKTGSGKTMAFLLPMFRHVKDQRPVESGEGPVALVMTPTRELAVQI 342

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
           +   + + +   +      G  P + +   ++++      +++ T     D +       
Sbjct: 343 FRDAQPFLRAFNLRGACAYGGTPISEQIGEMKKL----VEVVVATPGRMIDLLTANSGRV 398

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
               ++  +++DE  R        L  +     +L +   P  +T++ ++     +  + 
Sbjct: 399 TNMQRVTYLVLDEADRMFD-----LGFEPQVMKILGLI-RPDRQTVLFSATFPKPMESLA 452

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR-------S 502
            K    +P++ ++   + +   I ++  V  +  K + +   + +    +          
Sbjct: 453 RKMLRHEPLEVIVGGRSVVAAEIRQIVEVRPDSSKFHRLLEILGQLYHHDEDARTLIFVD 512

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +  + L             +HG     D+++ +  FK G   +L AT+V   G+DV  
Sbjct: 513 RQDAADELMHMLMKRGYPTMSLHGGKDQADRDTTLADFKAGIVPILTATSVAARGLDVKQ 572

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
             +++  +  +     +H+  GR GR     +C+    P   + +   ++ L+ ++
Sbjct: 573 LKLVVNYDVPNHLEDYVHR-AGRTGRAGNQGTCVTFITPEQDRYAKDIVAALRASK 627


>gi|332521345|ref|ZP_08397801.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043073|gb|EGI79271.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 444

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 134/360 (37%), Gaps = 38/360 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QAV 325
           P+  Q  AI  +L           +     G+GKT    + +   +           +A+
Sbjct: 24  PSPIQAKAIPPVLDGYDV------LASAQTGTGKTAGFTLPLLHILSENPKEKFRPIRAL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q Y  +K+Y++   +   +I G + Q  +   + +       +++ T   
Sbjct: 78  VLTPTRELAAQVYANVKEYSEFLNLRSVVIFGGVNQKPQVANIRK----GVDVLVATPGR 133

Query: 386 FQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT-LVLTS 439
             D      +   ++ + ++DE  R      L+  ++       +M   P  R  L+ ++
Sbjct: 134 LIDLNNQGLLSLKRVEIFVLDEADRMLDMGFLRDIER-------VMKLMPDKRQNLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               DI K+      + P++    P N   E I +    +++G K   +   I +     
Sbjct: 187 TFSKDIKKLAFN-ILKNPVQVEATPENTAVEAISQKVYRVAKGLKTGLVIKLISDGNWKQ 245

Query: 500 ---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F       N L +   SS    A IHG  S   +   +  FK+GT ++++AT +   
Sbjct: 246 VLVFTRTKHGANKLTKKMISSGITAAAIHGNKSQGARTKALKGFKDGTIRVMVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     +I     +     +H++ GR GR       I L     ++       ++  
Sbjct: 306 GLDIPLLPHVINFEIPNISEDYVHRI-GRTGRAGAKGEAISLVSADETQYLRDIEKLIGE 364


>gi|304408310|ref|ZP_07389958.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304342779|gb|EFM08625.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 482

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 137/371 (36%), Gaps = 40/371 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           L  + F  PT+ Q   I  +LQ          +++   GSGKT    I +   V   E  
Sbjct: 19  LEGLAFNEPTEVQREVIPVVLQGRD------IVVKSQTGSGKTAAYGIPLCELVSWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +I+ P   LA Q  E +    +  ++    I G  P   ++  L++    + HI+ G
Sbjct: 73  PQVLILTPTRELAVQVKEDLTNIGRFKRVKAAAIYGKQPFHIQKLELKQ----KTHIVAG 128

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+           L++   DE    G   Q   + ++  A  V ++ +  +P
Sbjct: 129 TPGRVLDHIEKGTFPLSKLAYLVIDEADEMLNMGFIDQVEAIIKRLPAERVTMLFSATLP 188

Query: 433 R---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L    + D    +I         I+   I ++  D++     + + E   +  I 
Sbjct: 189 EDVDQLRRNYMRDPVSVEIQATGLTTDAIEHAQIKVSEADKLELLQSITIVENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E        V E F  L          IHG M+  ++  VM +F+ G  + LIAT 
Sbjct: 249 CRTQE-------GVNELFRKL-ARLEYPCDRIHGGMAQEERLEVMGAFRRGQFRYLIATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +        +H+  GR GR  +    I    P           
Sbjct: 301 VAARGIDIDNITHVINYDFPLDKEGYVHR-TGRTGRAGKRGQAITFVTPSDEGRLAEVEQ 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFRI 365


>gi|225717006|gb|ACO14349.1| Eukaryotic initiation factor 4A-III [Esox lucius]
          Length = 406

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 135/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    +++   ++      QA+I+A
Sbjct: 55  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFCVSVLQCLDIQVRETQALILA 108

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 109 PTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 164

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V L++AT     L +T
Sbjct: 165 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMT 224

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 225 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 277

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 278 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 337

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 338 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 396

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 397 EMPMNVADL 405


>gi|195475588|ref|XP_002090066.1| GE20836 [Drosophila yakuba]
 gi|194176167|gb|EDW89778.1| GE20836 [Drosophila yakuba]
          Length = 1464

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 130/376 (34%), Gaps = 43/376 (11%)

Query: 273  PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------A 324
            PT  Q+ +I  I            +     GSGKT   L+ + + +    Q        A
Sbjct: 1071 PTPIQKVSIPVIAAGRD------LMACAQTGSGKTAAFLVPILSKLLDDPQDLEFGKPQA 1124

Query: 325  VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            VI++P   LA Q +   +K+   + + + I+ G     H+ + + +      H++I T  
Sbjct: 1125 VIVSPTRELAIQIFSEARKFAFESYLKISIVYGGTSFKHQNECITK----GCHVLIATPG 1180

Query: 385  LFQDSIQY--------YKLILVIVDEQHRFGVQQ---RLKLTQKATAPHVLLMTATPIP- 432
               D +            ++L   D     G  +   +    Q     H  LM +   P 
Sbjct: 1181 RLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSESMRKFMNHQTMRPEHQTLMFSATFPE 1240

Query: 433  --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
              + L    L       I         ++  I  +N+  +  + ++++  +         
Sbjct: 1241 EIQRLAGEFLKSYVFVTIGVVGGACSDVQQTIYEVNKFAKRSKLMEILREQADGTIVFV- 1299

Query: 491  QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                      +   +   S           IHG      +E  +  FKNG+ K++IAT+V
Sbjct: 1300 --------ETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRDFKNGSMKVIIATSV 1351

Query: 551  IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN-SYTRLS 609
               G+D+ +   ++  +  +     +H++ GR GR          + P   +  +   + 
Sbjct: 1352 AARGLDIKNIKHVVNFDMPNNIDDYVHRI-GRTGRVGNNGRATSFFDPDQDQALAGDLIK 1410

Query: 610  VLKNTEDGFLIAEEDL 625
            +L+ +         DL
Sbjct: 1411 ILEGSGQTVPEFLRDL 1426


>gi|157119649|ref|XP_001653435.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108875244|gb|EAT39469.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 911

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/399 (20%), Positives = 144/399 (36%), Gaps = 42/399 (10%)

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            +  + +      P +PT  Q       L        ++ I Q   GSGKTL  ++    
Sbjct: 237 PDFVMNEINKMGFP-NPTAIQAQGWPIAL----SGRDLVGIAQ--TGSGKTLAYMLPGIV 289

Query: 317 AVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRK 366
            +          G   +++AP   LAQQ    ++ +  +++  I    I G   +  + +
Sbjct: 290 HIAHQKPLQRGEGPVVLVLAPTRELAQQIQTVVRDFGTHSKPLIRYTCIFGGALKGPQVR 349

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGV--QQRLKLTQ 416
            LER       ++I T     D ++           L+L   D     G   Q R  + Q
Sbjct: 350 DLER----GVEVVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQ 405

Query: 417 KATAPHVLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                 VL+ +AT       L    L D     I             I+ +    E   +
Sbjct: 406 IRPDRQVLMWSATWPKEVQALAEDFLHDYIQINIGSLNLSANHNIHQIVDVCEEGEKEGK 465

Query: 475 LKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           L  +L E        I   +E KK+       +   ++      + +I HG  S  +++ 
Sbjct: 466 LLSLLKEISSDVNSKIIIFVETKKKVE-----DLLKNIVRDGYGATSI-HGDKSQSERDY 519

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           V+  F++G   +L+AT V   G+DV D   +I  +  +     +H++ GR GR     + 
Sbjct: 520 VLQDFRHGKSTILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRI-GRTGRCSSYGTA 578

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
              + P   + +   LSVL+           DL ++  G
Sbjct: 579 YTFFTPGNGRQARELLSVLEEAGQQPTAQLIDLAKQAPG 617


>gi|94497443|ref|ZP_01304013.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
 gi|94423074|gb|EAT08105.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
          Length = 443

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 143/382 (37%), Gaps = 41/382 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI  +L           I     G+GKT   ++ M   +  G       +++
Sbjct: 23  TPTPIQAQAIPSVL------MMKDIIGIAQTGTGKTASFVLPMIDILAHGRARALMPRSL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  +KY +  ++ + ++ G +    + KALE+       ++I T   
Sbjct: 77  ILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQVKALEK----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIPR 433
             D  +  K++L      ++DE  R      +   +            LL +AT  P+ +
Sbjct: 133 LMDLFERGKILLNGCNMLVIDEADRMLDMGFIPDIEHICTKLPAQRQTLLFSATMPPVIK 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK-AYWICPQI 492
            L    L +    ++         I   ++ ++   +      ++  +  + A   C + 
Sbjct: 193 KLADRFLSNPKSIEVARPATASTNIAQHLVKVDARKKREALRALLDGQQVQSAVIFCNRK 252

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
              +E N     + + S           IHG +    + + ++ F++GT  +L+A+ V  
Sbjct: 253 TTVRELNKSLQRDGYKS---------GEIHGDIDQASRIAELERFRDGTVNILVASDVAA 303

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+   S +   +A       +H++ GR GR               ++       ++ 
Sbjct: 304 RGLDIKGVSHVFNFDAPWHPDDYVHRI-GRTGRAGAKGVAYTFVTKDDAEAIDNIQKLIG 362

Query: 613 NTEDGFLIAEE--DLKQRKEGE 632
              D    A E  D + + EG+
Sbjct: 363 TKIDYADFAGETTDAEPKAEGK 384


>gi|74695852|sp|Q75EW9|RRP3_ASHGO RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 487

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/349 (21%), Positives = 130/349 (37%), Gaps = 34/349 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
             N+ F+ PT  Q  AI   LQ          I     GSGKT    I +   +    Q 
Sbjct: 81  CDNLNFTKPTPIQSKAIPPALQGKD------IIGLAQTGSGKTAAFAIPILNRLWHDQQP 134

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A I+AP   LAQQ  E          +    I G M    + + L R    + HIII 
Sbjct: 135 YYACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMR----KPHIIIA 190

Query: 382 THALFQDSIQYYKLILV-------IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           T     D ++ +K           ++DE  R      L +        +L    T +  T
Sbjct: 191 TPGRLMDHLEVHKRGFALRKQQFLVMDEADRL-----LNMKFGPVLDRILKNIPTKVRTT 245

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + ++     I K+ ++ +    +K  +    +  + + +  +V+  G K  ++   + E
Sbjct: 246 YLFSATMTSKIDKL-QRASLTNTVKCAVSNKYQTVDTLVQTLIVVPGGLKNTFLIYLLNE 304

Query: 495 ------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    +  ++  ER + L      S   +HG ++   +   +D FK G   +L+AT
Sbjct: 305 FIGKTTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKKSILVAT 364

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            V   G+D+    ++I  +      + +H++ GR  R       + L  
Sbjct: 365 DVAARGLDIPSVDLVINYDIPVDSKSYIHRV-GRTARAGRSGKSVSLVS 412


>gi|296876849|ref|ZP_06900897.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           15912]
 gi|296432351|gb|EFH18150.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           15912]
          Length = 523

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 134/362 (37%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     ++      QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIDVDNTVIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    + 
Sbjct: 135 KRKALKLNHIETLILDEADEMLNMGFLEDIEA-------IISRVPETRQTLLFSATMPEA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRS 502
            K       ++P    I       +++++  + + EG+K   +   ++ ++      F  
Sbjct: 188 IKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVEQPELAIIFGR 247

Query: 503 VVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNVDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKTGQSITFVSPNEMGYLQIIENLTKKRMKGMK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|152992886|ref|YP_001358607.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424747|dbj|BAF72250.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
          Length = 457

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 127/345 (36%), Gaps = 39/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           SPT  Q+ AI  +++          +     G+GKT    + +   +            +
Sbjct: 23  SPTPIQKQAIPVVIEGKDV------LAAAQTGTGKTAGFTLPLLERLSETHPKMGKKQIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA Q  E IK Y +  +    ++ G +    +   + R       I+I T 
Sbjct: 77  VLVLTPTRELAAQVAESIKTYGKYMKYTSTVVYGGVGINPQLATIRR----GVDIVIATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVL 437
               D      I +  L  +++DE  R      +   +K       LM   P   +TL+ 
Sbjct: 133 GRLLDIAGQQGIDFSALETLVLDEADRMLDMGFIHDIKK-------LMKMMPKERQTLLF 185

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++   ++I K+      + P+   +   N   + I ++   + + +K   +   I+ K  
Sbjct: 186 SATFSLEIKKLAS-GLLKNPVLVEVARENTTADQISQVVHFVDKSRKRELLSQLIKTKDW 244

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +    R     E    S A IHG  S   +   + SFK    ++L+AT + 
Sbjct: 245 RQVLVFTRTKHGANRLTKQLEEAGISAAAIHGNKSQGARTKALASFKANEIRVLVATDIA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             GID+     ++     +     +H++ GR GR  +    + L 
Sbjct: 305 ARGIDIDQLPHVVNYELPNVPEDYVHRI-GRTGRAGQSGEAVSLV 348


>gi|157377161|ref|YP_001475761.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157319535|gb|ABV38633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 610

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/360 (21%), Positives = 132/360 (36%), Gaps = 26/360 (7%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + +  PT  Q ++I  ++           + Q   G+GKT    + +  +++     
Sbjct: 21  LDELGYEKPTPIQAASIDPLMAGKD------ILGQAQTGTGKTGAFALPLLNSIDPNTNA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    Y +    + V  I G      +  AL R       II+
Sbjct: 75  PQILVLAPTRELAVQVAEAFGSYAKFMKGLHVLPIYGGQSMHQQLNALRR----GPQIIV 130

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT     D ++   L L  +        +    L          ++  TP  R L L S 
Sbjct: 131 GTPGRVMDHMRRGTLKLESLKAMVL--DEADEMLKMGFIDDIEWILEHTPKQRQLALFSA 188

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
              +  K        +P+   I       E IE+  V +S+  K   +   +E +K    
Sbjct: 189 TMPEQIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRVLEVEKTEGI 248

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                   S VE    L     +S + +HG M+   +E  +D  K GT  ++IAT V   
Sbjct: 249 IIFVRTRNSCVELAEKLEARGYAS-SPLHGDMNQQARERAVDQLKRGTLDIIIATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV     ++  +  +   A +H++ GR GR       IL       +   T     K+
Sbjct: 308 GLDVERIGHVVNYDIPYDTEAYVHRI-GRTGRAGRTGMAILFVTHREMRMLRTIERATKS 366


>gi|152986565|ref|YP_001346544.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150961723|gb|ABR83748.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 447

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 126/344 (36%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQ------- 323
           +PT  Q  AI   L+          +     G+GKT    + +   +   G Q       
Sbjct: 23  TPTPIQAQAIPPALKGRD------LLAAAQTGTGKTAAFALPLLQRLTLEGPQVAANSVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA+Q +  I+ Y Q+  +   +  G +    +   L +       +++ T 
Sbjct: 77  ALVLVPTRELAEQVHGSIRDYGQHLPLRTAVAYGGVSINPQMMKLRK----GVDVLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++Q+ +L  +++DE  R        L          L  A P  R  +L 
Sbjct: 133 GRLLDLYRQNAVQFARLQALVLDEADRM-------LDLGFARELDELFAALPRKRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +       R P+   + P N   + + +  V + + +KA   C  ++  +  
Sbjct: 186 SATFSDAIRTLAGELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWR 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R  VE    L +    +   IHG      +   +  FK G   LL+AT V  
Sbjct: 246 QALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            G+D+ +  +++  +        +H++ GR GR       + L 
Sbjct: 306 RGLDIEEMPLVVNFDLPIVAEDYVHRI-GRTGRAGATGQALSLV 348


>gi|320540013|ref|ZP_08039670.1| putative ATP-dependent RNA helicase, specific for 23S rRNA
           [Serratia symbiotica str. Tucson]
 gi|320029936|gb|EFW11958.1| putative ATP-dependent RNA helicase, specific for 23S rRNA
           [Serratia symbiotica str. Tucson]
          Length = 461

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/457 (18%), Positives = 172/457 (37%), Gaps = 53/457 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +A+  IL+    +       +   GSGKT    I +   +      
Sbjct: 19  LNQLGYVEMTPVQLAALPAILKGQDVR------AKAKTGSGKTAAFGIGVLDNINVALVS 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+ P   LA Q  + +++  + TQ I +  + G  P   +  +L        HI++
Sbjct: 73  TQALILCPTRELADQMSKELRRLARFTQNIKILTLCGGQPLGPQLDSLVHA----PHIVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT     + ++   L+L ++ +        R+     A     ++    P  +TL+ ++ 
Sbjct: 129 GTPGRILEHLRKKTLVLEML-KVLVLDEADRMLDMGFADDIDEVISETPPQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
              DI +I+ +   R+P+K  +   +     IE+     +  ++A  +   I   +    
Sbjct: 188 YPADIERISAR-VQREPLKIEVDNGDE-QTTIEQRFYETTANQRAALLVSVIRHYQPASC 245

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +      E +  S+  +HG +   +++ V+  F N +C++L+AT V   G
Sbjct: 246 VVFCNTKRDCQTVFEALEAYGISVLALHGDLEQRERDQVLVRFTNRSCRVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+ +  +++           +H++ GR GR       I L  P     ++     ++  
Sbjct: 306 LDITELELVVNYELAFDPQVHVHRI-GRTGRAGRHGLAISLCTPQEMVRAHAIEDDMQMK 364

Query: 615 EDGFLIAE---------------------EDLKQRKEGEILGIKQSGMPKFLIA-----Q 648
                ++E                        K R  G+ILG   SG      A      
Sbjct: 365 ITWVPVSELSVVATTPLEAEMTTLCIDGGRKAKIR-PGDILGALTSGDTGLTAAAVGKID 423

Query: 649 PELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                + + I +  A   + Q      ++G+  ++ L
Sbjct: 424 MFPQHAYVAIHQASAHKAIQQL-QQGKIKGKRCKVRL 459


>gi|302922639|ref|XP_003053509.1| hypothetical protein NECHADRAFT_74731 [Nectria haematococca mpVI
           77-13-4]
 gi|256734450|gb|EEU47796.1| hypothetical protein NECHADRAFT_74731 [Nectria haematococca mpVI
           77-13-4]
          Length = 1201

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/383 (19%), Positives = 138/383 (36%), Gaps = 58/383 (15%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ++ N+ +  PT  Q  A+  ++           I     GSGKT+  L+ M   ++    
Sbjct: 617 VIDNLGYEKPTPIQMQALPALMSGRDV------IGVAKTGSGKTVAFLLPMFRHIKDQPP 670

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +IM P   LA Q +   K + +   +      G  P   +   L+R     
Sbjct: 671 LKDTDGPIGLIMTPTRELAVQIHRDCKPFLKMMGLRSVCAYGGAPIREQIAELKR----G 726

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K      +   
Sbjct: 727 AEIIVCTPGRMIDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFEPQVMK------IFAN 780

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++     I  +T+K   + PI+  +   + + + IE++  V  E  K   
Sbjct: 781 MRPDKQTILFSATMPRIIDSLTKK-VLKNPIEVTVGGRSVVAKEIEQIVEVRDEPSKFLR 839

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +   + E  + +  +                     R   +D++S +  FK G   +LIA
Sbjct: 840 VLELLGELYDRDEDA---------------------RKDQVDRDSTISDFKKGVVPILIA 878

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T+V   G+DV    ++I  +A +     +H+  GR GR       +    P     +   
Sbjct: 879 TSVAARGLDVKQLKLVINYDAPNHLEDYVHR-AGRTGRAGNTGVAVTFVTPEQENCAPGI 937

Query: 608 LSVLKNTEDGFLIAEEDLKQRKE 630
              L+    G  + E   + RK 
Sbjct: 938 AKALEQ--SGQPVPERLNEMRKA 958


>gi|218188023|gb|EEC70450.1| hypothetical protein OsI_01481 [Oryza sativa Indica Group]
          Length = 512

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 141/395 (35%), Gaps = 43/395 (10%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
              K              Q +     F  P+  Q  A   +L           I     G
Sbjct: 86  ADAKYAPLSSFAATALPPQVLDCCKGFERPSPIQAYAWPYLLDGRD------FIGIAATG 139

Query: 304 SGKTLVALIAMAAAVEAG----------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           SGKT+   +     V              + ++++P   LAQQ  + + +      I   
Sbjct: 140 SGKTIAFGVPALMHVRRKMGEKSAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCGISSV 199

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGV 408
            + G   +  +  AL+        I+IGT    +D I+     L  V     DE  R   
Sbjct: 200 CLYGGTSKGPQISALKS----GVDIVIGTPGRMKDLIEMGICRLNDVSFVVLDEADRM-- 253

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
              L +  +     +L  TA+ + + ++ ++     + ++ ++     PIK VI   +  
Sbjct: 254 ---LDMGFEPEVRAILSQTAS-VRQMVMFSATWPPAVHQLAQEFMDPNPIKVVIGSEDLA 309

Query: 469 --DEVIERLKVVLSEGKKAYWICPQIEEKKESNFR--------SVVERFNSLHEHFTSSI 518
              +V++ ++V+    + +  +    +  K    R            R  ++ +    S 
Sbjct: 310 ANHDVMQIVEVLDDRSRDSRLVALLDKYHKAQRNRVLVFVLYKREATRVETMLQRRGWSA 369

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG  +  D+   +  FK G+C L+IAT V   G+D+ D  ++I  +        +H+
Sbjct: 370 VSVHGDKAQHDRTKALSLFKEGSCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHR 429

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + GR GR  +       +       +   ++VL+ 
Sbjct: 430 I-GRTGRAGKKGVAHTFFTQENKGLAGELVNVLRE 463


>gi|219870715|ref|YP_002475090.1| cold-shock DEAD box protein A-like protein [Haemophilus parasuis
           SH0165]
 gi|219690919|gb|ACL32142.1| cold-shock DEAD box protein A-like protein [Haemophilus parasuis
           SH0165]
          Length = 603

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 160/421 (38%), Gaps = 52/421 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q++ I  +L           +     GSGKT    + + A ++      Q ++MA
Sbjct: 28  TPSPIQQACIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLAQIDPEQRHPQMLVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  +++++N   I    I G      R     R     A +++GT     
Sbjct: 82  PTRELAIQVADACEQFSKNMKGIRTVTIYGG----QRYDIQIRALKNGAQVVVGTPGRIL 137

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D I+   L L ++        DE  R G  + +           ++       +T + ++
Sbjct: 138 DHIRRGTLDLSMLKAIVLDEADEMLRMGFIEDV---------ETVMAELPEDHQTALFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I +IT++   + P +  I    R    I +   +++  +K   +   +E ++   
Sbjct: 189 TMPEPIRRITKRFM-KDPQEVKIQATQRSAPDIAQSYWLVNGFRKNDALLRFLEVEEFDA 247

Query: 500 FRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                           L E      A ++G M+   +E  ++  K+G   +++AT V   
Sbjct: 248 AIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQAREQALEKLKSGRLDVIVATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+   S+++  +      + +H++ GR GR       +L   P   +       ++K 
Sbjct: 308 GIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLKNIEHLIKK 366

Query: 614 TEDGFLIAEED--LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
             D   +   +  +++R+E              +  Q E HD  LE+ R+  + + T D 
Sbjct: 367 PIDEVPVPNHEILMEKRREK---------FKARISLQLEHHD--LELYRELLEDLFTADQ 415

Query: 672 D 672
           D
Sbjct: 416 D 416


>gi|302502646|ref|XP_003013284.1| hypothetical protein ARB_00469 [Arthroderma benhamiae CBS 112371]
 gi|291176847|gb|EFE32644.1| hypothetical protein ARB_00469 [Arthroderma benhamiae CBS 112371]
          Length = 1181

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 138/379 (36%), Gaps = 47/379 (12%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----- 318
           ++R + +  PT  Q  A+  I+           I     GSGKT+  L+ M   +     
Sbjct: 539 VIRKLGYEGPTSIQSQAVPAIMSGRDV------IGVAKTGSGKTIAFLLPMFRHIRDQRP 592

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  ++IM P   LA Q +   + + +   +      G  P   +   L+R     
Sbjct: 593 LENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKR----G 648

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K          
Sbjct: 649 AEIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIR---- 704

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K    KPI+ ++   + +   I ++  V ++  K   
Sbjct: 705 --PNRQTVLFSATFPRNMEALARKTL-SKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVR 761

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  + L             IHG    ID++S +D
Sbjct: 762 LLELLGNLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTID 821

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    +++  +A +     +H+  GR GR     + +  
Sbjct: 822 DFKAGIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 880

Query: 596 YHPPLSKNSYTRLSVLKNT 614
                 + S      LK +
Sbjct: 881 LTEDQERYSVDISKALKQS 899


>gi|163732038|ref|ZP_02139484.1| ATP-dependent RNA helicase, putative [Roseobacter litoralis Och
           149]
 gi|161394336|gb|EDQ18659.1| ATP-dependent RNA helicase, putative [Roseobacter litoralis Och
           149]
          Length = 504

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 148/397 (37%), Gaps = 46/397 (11%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            + +        +N+  K+ + I      +PT  Q  AI   L           +     
Sbjct: 15  RKLRIHMIKFSELNLNPKVLKAIDEAGYETPTPIQAGAIPPALAGRDV------LGIAQT 68

Query: 303 GSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           G+GKT    + M   +  G       +++++ P   LA Q  E    YT++ ++   ++ 
Sbjct: 69  GTGKTASFTLPMITLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLI 128

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQR 411
           G +    + K +++       ++I T     D  +  KL+L     ++VDE  R      
Sbjct: 129 GGVSFKEQDKLIDK----GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGF 184

Query: 412 LKLTQKATAPHVLLMTATPI-PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +   ++       + + TP   +TL  ++    +I +IT       P +  +       E
Sbjct: 185 IPDIER-------IFSLTPFTRQTLFFSATMAPEIERITNTFL-SAPERVEVARQATASE 236

Query: 471 VIER---------LKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFT 515
            IE+              +E +K        E +K        N ++ V+      + + 
Sbjct: 237 TIEQGVLKFKASRKDREGTEKRKLLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLKKYN 296

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
              A IHG +    +   +D F++G+ K LIA+ V   G+DV   S +   +        
Sbjct: 297 YDAAPIHGDLDQSQRTRTLDGFRDGSLKFLIASDVAARGLDVPAVSHVFNFDVPGHAEDY 356

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +H++ GR GR       I++  P   +N      +++
Sbjct: 357 VHRI-GRTGRAGRDGKAIMICVPRDERNLEDIERLVQ 392


>gi|150002994|ref|YP_001297738.1| ATP-dependent RNA helicase DeaD [Bacteroides vulgatus ATCC 8482]
 gi|149931418|gb|ABR38116.1| ATP-dependent RNA helicase DeaD [Bacteroides vulgatus ATCC 8482]
          Length = 434

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 132/344 (38%), Gaps = 34/344 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQAVI 326
           +PT  QE AI  +L+          +     G+GKT    I +   +     + G +A+I
Sbjct: 23  TPTPIQEQAIPVLLKGKD------LLGCAQTGTGKTAAFAIPLIQRLYQSDHKKGIKALI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   +Y   T +   +I G +PQ  +  AL+R       ++I T    
Sbjct: 77  LTPTRELAIQIGENFDQYAGYTGVKHAVIFGGVPQKAQVDALKR----GVQVLIATPGRL 132

Query: 387 QD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            D      I    L   ++DE  R      +   +K      +L       +TL  ++  
Sbjct: 133 LDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKK------VLKLIPARRQTLFFSATM 186

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC-----PQIEE-K 495
             +I K+ +      P K  + P++   + I +    + + +K   +      P+IE   
Sbjct: 187 PSEIEKLADS-MLTNPEKIEVTPVSSTVDTIRQSVYFVEKKEKKDLLLHLLKNPEIESVL 245

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  +   ++   +          IHG  S   ++  + +FK+ T ++LIAT +   GI
Sbjct: 246 IFTRTKHGADKLARILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDIAARGI 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV   S +I     +     +H++ GR GR       I      
Sbjct: 306 DVNQLSHVINYELPNISETYVHRI-GRTGRAGHDGIAISFCESE 348


>gi|317124106|ref|YP_004098218.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043]
 gi|315588194|gb|ADU47491.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043]
          Length = 605

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/367 (19%), Positives = 134/367 (36%), Gaps = 42/367 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
           R++ +  P+  Q + I  +L+          +     G+GKT    + + A ++      
Sbjct: 42  RDLGYEHPSPIQAATIPAMLEGRDV------VGLAQTGTGKTAAFALPILARLDLKQKTP 95

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+++AP   LA Q  E  ++Y  N   + V  + G      +  AL R      H+++G
Sbjct: 96  QALVLAPTRELALQVCEAFERYAANLRGVHVLPVYGGQGYGVQLSALRR----GVHVVVG 151

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D ++           L+L   DE  + G  + +   L        V L +AT  
Sbjct: 152 TPGRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPADKQVALFSATMP 211

Query: 432 PRTLVLTSLGDIDISKITEKPAGRK-PIKT----VIIPINRIDEVIERLKVVLSEGKKAY 486
            +   ++     D  +IT K      P  T    ++    ++D +   L+V   EG   +
Sbjct: 212 AQIRRISKQHLTDPVEITVKAKTTTAPNITQRYLIVSYPQKVDALTRILEVENFEGMIVF 271

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                         ++  E           S A I+G +    +E  +D  ++G   +L+
Sbjct: 272 V-----------RTKNETETLAEKLRARGFSAAAINGDIVQAQRERTVDQLRSGKLDILV 320

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV   S ++  +      + +H++ GR GR       I    P        
Sbjct: 321 ATDVAARGLDVERISHVVNFDIPTDTESYVHRI-GRTGRAGRSGDAISFVTPRERHLLKA 379

Query: 607 RLSVLKN 613
                + 
Sbjct: 380 IEKATRQ 386


>gi|86138673|ref|ZP_01057246.1| putative ATP-dependent RNA helicase protein [Roseobacter sp.
           MED193]
 gi|85824733|gb|EAQ44935.1| putative ATP-dependent RNA helicase protein [Roseobacter sp.
           MED193]
          Length = 431

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/356 (19%), Positives = 128/356 (35%), Gaps = 25/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  AI   L           +     G+GKT    + + + +   G+        
Sbjct: 18  DPTPIQARAIPHALNGEDV------LGLAQTGTGKTAAFGVPLISRMLDYGRKPAAHTVR 71

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q    +K  T+ T + + ++ G +    + + + R       I++ T 
Sbjct: 72  GLVLAPTRELANQIAATLKALTEGTPMKIGLVVGGVSINPQIQRISR----GTDILVATP 127

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    L L   D        Q L L        +  +      +T++ ++    
Sbjct: 128 GRLLDILDRNALDLGSCDFLVLDEADQMLDLGFIHALRKISSLL-PEERQTMLFSATMPK 186

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---- 499
            +++I      R     V  P     +V + +  +    K +       E K E      
Sbjct: 187 QMNEIANSYLNRPVRIEVTPPGKPAAKVTQSVHFIAKAEKLSLLKELLTEHKDERTLVFG 246

Query: 500 -FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  +E+   + E    + A IHG  S   +E  + +FK+G  K+L+AT V   G+D+ 
Sbjct: 247 RTKHGMEKLMKVLEKSGFAAAAIHGNKSQGQRERALAAFKSGQIKVLVATDVAARGLDIP 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           D   +      +   A +H++ GR  R  +    +    P   +       V+K T
Sbjct: 307 DVKYVYNYELPNVPDAYVHRI-GRTARAGKDGQAVAFCSPDEMEELKAIQKVMKIT 361


>gi|119775819|ref|YP_928559.1| DEAD-box ATP dependent DNA helicase [Shewanella amazonensis SB2B]
 gi|119768319|gb|ABM00890.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
           SB2B]
          Length = 533

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 135/363 (37%), Gaps = 40/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGG---QA 324
           +P+  Q  AI  +L+          +     G+GKT    + +   +    +AG    +A
Sbjct: 23  TPSPIQAQAIPVVLEGRD------LLAAAQTGTGKTAGFTLPLLELLSQTQKAGPKQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + I  Y++   +   ++ G +    +   L R       I++ T  
Sbjct: 77  LILTPTRELAAQIADNITAYSKYLPLKSTVVFGGVGIGPQITTLRR----GIDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIP 432
              D     ++ ++ L ++++DE  R      +   ++           LL +AT  P  
Sbjct: 133 RLLDLHQQNAVSFHGLEILVLDEADRMLDMGFIHDIKRILKLLPAKRQNLLFSATFSPEI 192

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQ 491
           RTL    L +     +T + +  + +K  I+P+++  +  +          ++    C  
Sbjct: 193 RTLAHGLLHNAAEVSVTPRNSAAESVKQWIVPVDKNQKPALLAELTRFYRWQQVLVFCRT 252

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +    R     +      A IHG  S   +   +  FK G  ++LIAT + 
Sbjct: 253 ---------KHGANRLVRQMDAEGIKAAAIHGNKSQNARTQALADFKRGAIRMLIATDIA 303

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ +   ++     H     +H++ GR GR         L     +K       ++
Sbjct: 304 ARGIDISELPNVVNFELPHVPEDYVHRI-GRTGRAGASGEAASLVCNEEAKQLRDIERLI 362

Query: 612 KNT 614
           K +
Sbjct: 363 KQS 365


>gi|320170440|gb|EFW47339.1| DEAD box RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 662

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 136/405 (33%), Gaps = 51/405 (12%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           K       +  N  G     +     F SPT  Q       L           I     G
Sbjct: 229 KSAMLNPILAFNQAGFPEDLLTACAGFASPTPIQSQCWPISLAGKD------LIGIAKTG 282

Query: 304 SGKTLVALIAMAAAV-----------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQ--- 349
           SGKTL   +     +           + G   +++ P   LA Q  E       +T    
Sbjct: 283 SGKTLAFALPSIIHLRDQEALGKSSNQRGPVVLVLCPTRELAMQTAEVYANVASHTGKSS 342

Query: 350 ----IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIV 400
               +    I G +P+  +   L+       H+I+ T    +D      I   ++  VI+
Sbjct: 343 SSVALKTVCIFGGVPKKQQLDQLKS----GIHVIVATPGRLRDFIDSGDISLQRVSCVIL 398

Query: 401 DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT 460
           DE  R      L L  +     +L    T   +TL+ ++     I  I  +      ++ 
Sbjct: 399 DEADRM-----LDLGFEKDIRDILGR-VTKDRQTLMFSATWPSAIEAIGREFLAPDTVRV 452

Query: 461 VIIPINRI-DEVIERLKVVLSEGKKAYWICPQIEEKKESN---------FRSVVERFNSL 510
            I     + ++ + +   VL    K   +   +++   S          ++    R   +
Sbjct: 453 TIGGDELVANDAVTQHVEVLEPFAKDARLLDLLQKHHSSRKNKVIIFVLYKQEAPRVEQM 512

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
                     IHG  S  D+ + + +FK G   LLIAT V   G+D+ +   +I      
Sbjct: 513 LLRKGWKSIAIHGDRSQADRTAALQAFKTGEVPLLIATDVAARGLDIPNVEYVINYTFPL 572

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
                +H++ GR GR  +  +    +      +S   ++VL+ T 
Sbjct: 573 TIEDYVHRI-GRTGRAGKTGTAFTFFTVNDKSHSGELVNVLRETN 616


>gi|291514657|emb|CBK63867.1| Superfamily II DNA and RNA helicases [Alistipes shahii WAL 8301]
          Length = 690

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 87/437 (19%), Positives = 160/437 (36%), Gaps = 41/437 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  Q   I  +L   +       I Q   G+GKT    + +   +E    G Q++I+ 
Sbjct: 47  TPTSIQRLTIPRLLSGEN-----DIIAQSQTGTGKTAAFGLPILQQIEPSKEGVQSIILV 101

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E +  Y +  ++ +  I G    + + + L R       I++GT     D
Sbjct: 102 PTRELAVQAAEELLSYNRERRLSITAIYGGAAMSEQLRRLSR----GVDIVVGTPGRVLD 157

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G  + ++     T     VLL +AT   R + L+
Sbjct: 158 HIRRGTLKLDKVRFLVLDEADEMLNMGFVEDVEEIMGHTGEDRRVLLFSATMPERIIRLS 217

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                +   +  +        T  I    R  +  + +  ++      Y I         
Sbjct: 218 EAYMRNTEVLRVESQHLTADLTNQIYFEVREADKFDAMTRIIDIEPDFYGIVF------- 270

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +  V+   +       S   +HG +S   +E ++  F++    +L+AT V   GIDV
Sbjct: 271 CRTKIGVDEVATRLVAQGYSAEGLHGDVSQAQREKILRKFRDKAVNILVATDVAARGIDV 330

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            + S +I  +      + +H++ GR GR     + I                ++++ +  
Sbjct: 331 SNLSHVINYSLPQDSESYVHRI-GRTGRAGNQGTAITFIS---GAELRRFNWMMRDIKA- 385

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFL--IAQPELHDSLLEIARKDAKHILTQDPDLTS 675
             I  E L      +I+ +K++ +   L  I   E +    +IA  +       D  L +
Sbjct: 386 -DIKRETLP--SPQDIVAMKRAKIKDDLQEIVANESYGDYADIA-AELLESYAPDVALGA 441

Query: 676 VRGQSIRILLYLYQYNE 692
           +   + R  L    Y E
Sbjct: 442 LLRLAFRSELDQSNYPE 458


>gi|227432573|ref|ZP_03914553.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351656|gb|EEJ41902.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 536

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/341 (19%), Positives = 127/341 (37%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE  I   L           I Q   G+GKT    + +   ++      QA+I++P 
Sbjct: 37  TPIQEKTIPLTLAGRDV------IGQAQTGTGKTAAFGLPILEHIDLNNKNIQALIVSPT 90

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E +KK  ++ ++ V+++ G      + + L+        I++GT     D I
Sbjct: 91  RELAIQTAEELKKLGRDKRVDVQVVFGGADIRRQIQNLKS----HPQILVGTPGRLLDHI 146

Query: 391 QYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
                       L+L   DE    G        +++       LL +AT  P  + + + 
Sbjct: 147 NRKTVKIDSVRTLVLDEADEMLNMGFLDDIEAIISKTPAERQTLLFSATMPPAIKRIGVK 206

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  +I  K      +    + +   ++     ++   +  K   +  +       
Sbjct: 207 FMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIFDVQAPKLAIVFGRT------ 260

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  VE  +   E      A +HG ++   +  V+  FK+    +L+AT V   G+DV 
Sbjct: 261 --KRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILVATDVAARGLDVK 318

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           D S +   +      + +H++ GR GR       +    P 
Sbjct: 319 DVSHVYNFDIPQDPESYVHRI-GRTGRAGAKGVSVTFVAPN 358


>gi|194898941|ref|XP_001979021.1| GG10666 [Drosophila erecta]
 gi|190650724|gb|EDV47979.1| GG10666 [Drosophila erecta]
          Length = 720

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 134/378 (35%), Gaps = 41/378 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       +           +     GSGKTL  ++     +          G  
Sbjct: 303 APTAIQAQGWPIAMSG------SNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPI 356

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  ++ +    + G  P+  + + L+R       I+I T 
Sbjct: 357 ALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE----IVIATP 412

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     S    +   +++DE  R          +K  +         P  +TL+ +
Sbjct: 413 GRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR------PDRQTLMWS 466

Query: 439 SLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    ++ ++ E   G      +    +   + I +V++       E K    +    + 
Sbjct: 467 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDT 526

Query: 495 KKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           +  V+        F      IHG  S  +++ V+  F++G   +L+A
Sbjct: 527 SESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 586

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV     +I  +        +H++ GR GR     +    +    +K +   
Sbjct: 587 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRI-GRTGRSNTKGTSFAFFTKNNAKQAKAL 645

Query: 608 LSVLKNTEDGFLIAEEDL 625
           + VL+        A E+L
Sbjct: 646 VDVLREANQEINPALENL 663


>gi|160902412|ref|YP_001567993.1| DEAD/DEAH box helicase domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160360056|gb|ABX31670.1| DEAD/DEAH box helicase domain protein [Petrotoga mobilis SJ95]
          Length = 530

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 128/340 (37%), Gaps = 26/340 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  QE  I  +L   +       I Q   G+GKT    I +   ++      QA+++ 
Sbjct: 24  APTPIQEKVIPLLLSGKNN-----VIGQAQTGTGKTAAFGIPLIERLDEKANDVQALVLT 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I     N ++ +  + G +   ++ +AL+R    +  +++GT     D
Sbjct: 79  PTRELALQVCNEIDSLKGNKRLNLLPVYGGVSIGNQIRALKR----RVDLVVGTPGRIID 134

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLT 438
            +            L++   DE    G  + +++    T     +L+ +AT   R + L 
Sbjct: 135 HLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKEKQILMFSATMPQRIVTLA 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                +   +T     ++ I   +    +I  +I     +    +               
Sbjct: 195 RKHMGNFETVTTVQENKEDIT--VKKAKQIYYMISESNKIELLSRLIDIDTNFYGLVFTK 252

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                 E  N L +    +   ++G +S   +E +MD FK+   K+LI+T V   GID+ 
Sbjct: 253 TKVQSEEIANELIKKGYEA-EALNGDVSQNQRERIMDRFKSKRIKILISTDVAARGIDID 311

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +   +I  +        +H++ GR  R     + I    P
Sbjct: 312 NLKYVINYSLPQNPENYIHRI-GRTARAGNEGTAITFVTP 350


>gi|66800707|ref|XP_629279.1| hypothetical protein DDB_G0293168 [Dictyostelium discoideum AX4]
 gi|74896763|sp|Q54CE0|DDX17_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx17; AltName:
           Full=DEAD box protein 17
 gi|60462734|gb|EAL60936.1| hypothetical protein DDB_G0293168 [Dictyostelium discoideum AX4]
          Length = 785

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 88/426 (20%), Positives = 150/426 (35%), Gaps = 41/426 (9%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-- 269
           PR  K+F    P   +   +E+   + +  +  K  +    I    +      +++ I  
Sbjct: 342 PRFEKNFYLEHPDVSKFTQEEIEKFRASFQMTVKGREVPPPIMQFTQAPFPGYLMKEIIG 401

Query: 270 -PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------E 319
             F  PT  Q  A    L+          I     GSGKTL  L+     +        +
Sbjct: 402 AGFPNPTPIQSQAWPIALKGRD------IIGLAKTGSGKTLAFLLPSIVHINAQPVLRED 455

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G   +++AP   LA Q  E   K+   +QI    + G   +  +  AL++       I+
Sbjct: 456 DGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKK----GVEIV 511

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT 429
           I T     D ++  K        L+L   D     G   Q R  ++Q       L+ +AT
Sbjct: 512 IATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMFSAT 571

Query: 430 PIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                  L    L D     I             I+ + +  E  ER+   L    +   
Sbjct: 572 WPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGSVGRDEK 631

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +    E +K  +     +    L      SI I HG  S  +++ V+  FKNG   ++IA
Sbjct: 632 VIVFAETRKGVD-----DLQRVLQFSGFKSIGI-HGNKSQPERDFVLSQFKNGMVPIMIA 685

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+ D   ++  +  +     +H++ GR  R         L     ++ +   
Sbjct: 686 TDVASRGLDIKDIKYVVNYDFPNTIEVYIHRI-GRTARAGASGVSYSLLTTDNARLANEL 744

Query: 608 LSVLKN 613
           + VL  
Sbjct: 745 IKVLTE 750


>gi|297589855|ref|ZP_06948495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|297576983|gb|EFH95697.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
          Length = 517

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/377 (18%), Positives = 141/377 (37%), Gaps = 36/377 (9%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           +    ++++   +    + +     Q +       PT  Q+ +I   LQ +        +
Sbjct: 1   MRNKQVKRRIILQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGID------IL 54

Query: 298 LQGDVGSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
            Q   G+GKT    I +   V  + G Q++I+AP   LA Q  E ++++++   + V  +
Sbjct: 55  GQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTV 114

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFG 407
            G MP   + KAL++       I++GT     D +          + LIL   DE    G
Sbjct: 115 FGGMPIERQIKALKK----GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMG 170

Query: 408 VQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
               ++                   +T++ ++     I  + ++   + P     +    
Sbjct: 171 FIDDMRFIMDKIPAVQ--------RQTMLFSATMPKAIQALVQQFM-KSPKIIKTMNNEM 221

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVERFNSLHEHFTSS---IAII 521
            D  IE    ++ E +K       ++  +      F     R + L     S       +
Sbjct: 222 SDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGL 281

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG ++   +  V+  FKN    +L+AT V   G+D+   S +   +      +  H++ G
Sbjct: 282 HGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRI-G 340

Query: 582 RVGRGEEISSCILLYHP 598
           R GR  +    +   +P
Sbjct: 341 RTGRAGKEGIAVTFVNP 357


>gi|237725257|ref|ZP_04555738.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D4]
 gi|229436523|gb|EEO46600.1| ATP-dependent RNA helicase DeaD [Bacteroides dorei 5_1_36/D4]
          Length = 434

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 133/344 (38%), Gaps = 34/344 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQAVI 326
           +PT  QE AI  +L+          +     G+GKT    I +   +     + G +A+I
Sbjct: 23  TPTPIQEQAIPVLLKGKD------LLGCAQTGTGKTAAFAIPLIQRLYQSDHKKGIKALI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   +Y +   +   +I G +PQ  +  AL+R       ++I T    
Sbjct: 77  LTPTRELAIQIGENFDQYAKYAGVKHAVIFGGVPQKAQVDALKR----GVQVLIATPGRL 132

Query: 387 QD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            D      I    L   ++DE  R      +   +K      +L       +TL  ++  
Sbjct: 133 LDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKK------VLKLIPARRQTLFFSATM 186

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC-----PQIEE-K 495
             +I K+ +      P K  + P++   + I++    + + +K   +      P+IE   
Sbjct: 187 PSEIEKLADS-MLTNPKKVEVTPVSSTVDTIQQSVYFVEKKEKKDLLLHLLKNPEIESVL 245

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  +   ++   +          IHG  S   ++  + +FK+ T ++LIAT +   GI
Sbjct: 246 IFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDIAARGI 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV   S +I     +     +H++ GR GR       I      
Sbjct: 306 DVNQLSHVINYELPNISETYVHRI-GRTGRAGHDGIAISFCESE 348


>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
           stomatis DSM 17678]
          Length = 538

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 137/383 (35%), Gaps = 41/383 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  ++ + ++ +  P+  Q  AI  +++          I Q   G+GKT    I +   
Sbjct: 12  SEEIKRAIEDLGYEEPSPIQAQAIPCMIEGHDV------IGQAQTGTGKTASFSIPILEN 65

Query: 318 VEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAH 373
           ++      QA+++ P   LA Q  E ++K  +    I    I G  P   + KAL     
Sbjct: 66  IDRDNRKLQAIVLCPTRELAIQVSEEVRKLAKYMQGIRTLPIYGGQPIDRQIKAL----K 121

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHV 423
           G   + IGT     D I    L L  V        DE    G ++ +   L+        
Sbjct: 122 GGVQVAIGTPGRVIDHINRKTLKLDQVKMVVLDEADEMLDMGFREDIETILSNVPEERQT 181

Query: 424 LLMTATPIPRTLVLTSLGDID--ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            L +AT     L LT     D    K+  K      IK   I   + +++    +++   
Sbjct: 182 ALFSATMPKAILELTKKYQKDPVHIKVVRKTLTVSNIKQYYIETRKSNKLEVLTRLLDVY 241

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
             K   +          N +   +   S  +        +HG +  + ++ VMD F+ GT
Sbjct: 242 NPKLTVVFT--------NTKKGADELVSSLQARGYGADSLHGDLKQVQRDIVMDKFRAGT 293

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   GID+ D   +I           +H++ GR GR                
Sbjct: 294 IDILVATDVAARGIDIDDVECVINYELPQDDEYYVHRI-GRTGRAGREGIAFSF---AFG 349

Query: 602 KNSYTRLSVLKNTEDGFLIAEED 624
           +       + + T+    I + D
Sbjct: 350 REMRKLKDIERYTKS--KIVKHD 370


>gi|254469871|ref|ZP_05083276.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062]
 gi|211961706|gb|EEA96901.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062]
          Length = 476

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/354 (20%), Positives = 131/354 (37%), Gaps = 26/354 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  +L+      R   +     G+GKT    + M   +E G       + +
Sbjct: 23  EPTAIQAGAIPYVLE------RRDVLGIAQTGTGKTASFTLPMITLLEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  +   +Y  N ++ V ++ G +  A + + LER     A ++I T   
Sbjct: 77  ILEPTRELAAQVEDNFNRYGVNHKLNVALLIGGVSFAEQDRKLER----GADVLIATPGR 132

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D  +  KL+L  VD        + L +        +  +      +TL  ++    +I
Sbjct: 133 LLDHFERGKLLLQGVDILVIDEADRMLDMGFIPDIERICKLI-PFTRQTLFFSATMPSEI 191

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-------- 497
            ++T+          V       + V +R+     E  +      ++ E  E        
Sbjct: 192 QRLTDTFLQNPAKVEVAKASTTAETVTQRIAAAEPEDYEKRAKLRELIEGAEDLQNAIVF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N +  V            S+  +HG M    + +++D+FK G  K+L+A+ V   G+D+
Sbjct: 252 CNRKRDVATLFRSLVRHEFSVGALHGDMDQRSRMTMLDNFKKGNIKILVASDVAARGLDI 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              S +   +        +H++ GR GR     + I +      K        +
Sbjct: 312 PSVSHVFNFDLPIQAEDYVHRI-GRTGRAGRDGTAISIVTGKDEKALQAINETI 364


>gi|145355346|ref|XP_001421924.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582163|gb|ABP00218.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 421

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/392 (17%), Positives = 138/392 (35%), Gaps = 54/392 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
           +PT  Q  A   +L+          +     GSGKT   L+   A++             
Sbjct: 25  APTPIQAEAWPILLKGKDV------VAIAKTGSGKTCGFLLPALASIMQLLDGRWRPGAV 78

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               +++AP   LA Q ++   K+         ++ G   +  + +AL       A +++
Sbjct: 79  TPTVIVLAPTRELAIQIHDECAKFCPAAGCRSAVLYGGAAKGDQLRALRS----GADVVV 134

Query: 381 GTHALFQD-------------SIQYYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLL 425
            T     D             +++   ++L   D     G + ++        +A   ++
Sbjct: 135 ATPGRLNDFLEPPPGFTAPVSAVKASYVVLDEADRMLDMGFEPQIKKIFKLCPSARQTVM 194

Query: 426 MTATPIP--RTLVLTSLGDIDISKI----TEKPAGRKPIKTVII--PINRIDEVIERLKV 477
            TAT     + +  +        +I     +  A +   +TV +     + D  +  LK 
Sbjct: 195 FTATWPKAVQKIADSFTTKPIHIQIGSGGDKLTANKSITQTVEVLEEEEKFDRCVAILKK 254

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
            L +                 + R        L +   SS   IHG     ++E V+D+F
Sbjct: 255 ELGKDDTCIMFAGTKRRCDFLDRR--------LKQSGFSSAGAIHGDKDQYEREMVLDNF 306

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + G   +L+AT V   G+D+   + +++ +        +H++ GR GR  +       + 
Sbjct: 307 RRGRGNILVATDVAARGLDIPGVAAVLVYDFPLQVEDYVHRI-GRTGRAGKEGKAFTFFT 365

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
                 +   + +L+       +A + + QRK
Sbjct: 366 KDNRGAANELIDILQGAGQTVPLALQAM-QRK 396


>gi|296813451|ref|XP_002847063.1| ATP-dependent RNA helicase DBP2 [Arthroderma otae CBS 113480]
 gi|238842319|gb|EEQ31981.1| ATP-dependent RNA helicase DBP2 [Arthroderma otae CBS 113480]
          Length = 417

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/368 (19%), Positives = 138/368 (37%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           +   + GSGKTL   +     + A        G  
Sbjct: 11  KPTPIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPI 64

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q    I K+ ++++I    + G +P+  + + L R       + I T 
Sbjct: 65  VLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLTR----GVEVCIATP 120

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++  +        L+L   D     G   Q R  + Q        + +AT    
Sbjct: 121 GRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMWSATWPKD 180

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLKVVLSEGKKAYW 487
            R L    L D     I  +        T    V+    + D +I+ L+ ++ + K    
Sbjct: 181 VRQLANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIKHLERIMEDKKSKVL 240

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            R   +    L +    +++I HG     +++ V++ FK+G   +++A
Sbjct: 241 IFT-------GTKRVADDITRFLRQDGWPALSI-HGDKQQSERDWVLNEFKSGKSPIMVA 292

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV D + ++  +  +     +H++ GR GR     + I ++    +K +   
Sbjct: 293 TDVASRGIDVRDITHVLNHDYPNNSEDYVHRI-GRTGRAGANGTAITMFTTENAKQARDL 351

Query: 608 LSVLKNTE 615
           + +L  ++
Sbjct: 352 VKILTESK 359


>gi|188587881|ref|YP_001922673.1| putative ATP-dependent RNA helicase RhlE [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498162|gb|ACD51298.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 432

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 133/369 (36%), Gaps = 31/369 (8%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +  QK L    ++ PT  QE +I  +L+          +     G+GKT    I +   +
Sbjct: 10  EPIQKALTEAGYTNPTPIQEQSIPSLLEGKD------FLGCAQTGTGKTAAFAIPVLQNI 63

Query: 319 EAGG---------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                        +A+I+AP   LA Q  E    Y+++T I   +I G + Q  + + L 
Sbjct: 64  AKNQNKSDKSRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTRILG 123

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
                   I+I T     D I    + L  V          R+           ++    
Sbjct: 124 E----GVDILIATPGRLLDLIDQKYIDLSNVKHFV-LDEADRMFDMGMVRDVKKIVAKLP 178

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            + + L+ ++    ++  +      + P+K  + P++   + I +    +++  K   + 
Sbjct: 179 KVRQNLLFSATMPSEVKSLVNS-ILKDPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLV 237

Query: 490 PQIEEK-------KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             ++++                     L +  T S AI HG  S   ++  + +FK G  
Sbjct: 238 HLLKDESIKSLLVFSRTKYGANNIVKDLAKTGTESQAI-HGNKSQNARQLALSNFKEGKI 296

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+AT +   GIDV   S +I  +        +H++ GR GR       I         
Sbjct: 297 RVLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRI-GRTGRAGNSGVAISFCDVDEKS 355

Query: 603 NSYTRLSVL 611
           +       +
Sbjct: 356 SLKDIEKTI 364


>gi|85118552|ref|XP_965469.1| hypothetical protein NCU02696 [Neurospora crassa OR74A]
 gi|74662807|sp|Q7SH33|PRP5_NEUCR RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp-5
 gi|28927278|gb|EAA36233.1| hypothetical protein NCU02696 [Neurospora crassa OR74A]
 gi|38567223|emb|CAE76515.1| related to RNA helicase [Neurospora crassa]
          Length = 1194

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/392 (19%), Positives = 140/392 (35%), Gaps = 47/392 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------ 318
           + ++ F  PT  Q  A+  I+           I     GSGKT+   + M   V      
Sbjct: 576 IESLGFEKPTPIQMQALPVIMSGRDV------IGVAKTGSGKTMAFALPMLRHVKDQDPV 629

Query: 319 --EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
             + G  A+IM P   L  Q Y  ++ + +  ++ V    G      +   L+R     A
Sbjct: 630 TGDDGAIALIMTPTRELCTQIYSDLQPFAKALKLRVVAAYGGNAIKDQIAELKR----GA 685

Query: 377 HIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            II+ T     D +           +   +++DE  R           K           
Sbjct: 686 EIIVATPGRLIDLLAANGGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVR----- 740

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  +T++ ++     I  +T+K   R P++  +   + +   I ++  V+ EGKK   +
Sbjct: 741 -PDRQTILFSATMPRIIDALTKK-VLRDPVEITVGGRSVVAPEITQIVEVMDEGKKFNRL 798

Query: 489 CPQIEEKKESNFR-------SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
              + E    +            E+ + L             IHG     D+ S +  FK
Sbjct: 799 LELLGELYADDDDVRSLIFVERQEKADDLLRELLRRGYGCMSIHGGKDQEDRNSTISDFK 858

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G C +LIAT++   G+DV    ++I  +A +     +H+  GR GR     + +     
Sbjct: 859 KGVCPILIATSIAARGLDVKQLKLVINYDAPNHLEDYVHR-AGRTGRAGNTGTAVTFITE 917

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
                +      L+    G  + +   + RK 
Sbjct: 918 EQENCASGIAKALEQ--SGQPVPDRLNEMRKA 947


>gi|254506632|ref|ZP_05118773.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
 gi|219550505|gb|EED27489.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
          Length = 458

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 151/423 (35%), Gaps = 60/423 (14%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ ++  T  Q+ A+  +L           I QG  GSGKT    + + + +      
Sbjct: 18  LDSLGYTEMTPIQQQALPLVLAGKDV------IGQGKTGSGKTATFSLGLLSNLNVSRFR 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++ P   LA Q  + I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 72  VQTLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 127

Query: 381 GTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D +        +   L+L   D     G ++ +           ++  A    
Sbjct: 128 GTPGRILDHMSKGRISLKELNTLVLDEADRMLDMGFEEAI---------DTIIEAAPSKR 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++    +I  ++EK     P    +   ++   + +R   + S  ++   +   +
Sbjct: 179 QTLLFSATFPDNIESLSEK-VMVAPEMVKVESTHQKSTIEQRFFKLNSTEERDDALEALL 237

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              K        N +  V+       H   S+  +HG M   ++E  +  F N +  +L+
Sbjct: 238 LTHKPESSVVFCNTKKEVQNVTDELSHRGFSVVELHGDMEQREREQALTMFANKSISILV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV +   +            +H++ GR GR          Y          
Sbjct: 298 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRI-GRTGRAGSKGVAFSFYSEKEEYRVAR 356

Query: 607 RLSVL-----------KNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLI 646
               +           K  E  F    + ++           G+ILG   KQ+G+    I
Sbjct: 357 IDEYMDIAVSPSELPEKLIERPFYPKMQTIQILGGKKQKVRAGDILGALTKQAGLDGKKI 416

Query: 647 AQP 649
            + 
Sbjct: 417 GKI 419


>gi|91087239|ref|XP_975511.1| PREDICTED: similar to eIF4AIII CG7483-PA [Tribolium castaneum]
 gi|270010579|gb|EFA07027.1| hypothetical protein TcasGA2_TC009998 [Tribolium castaneum]
          Length = 404

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 135/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    IA+  +++      Q + ++
Sbjct: 53  KPSAIQQRAIKPIIKGRDV------IAQAQSGTGKTATFSIAILQSLDLQTRETQVLCLS 106

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        +      G        + L+       H++ GT     D
Sbjct: 107 PTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQ----HVVSGTPGRVYD 162

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++    +    +  V+L++AT     L +T
Sbjct: 163 MIRRRALRTRSVKMLVLDEADEMLNKGFKEQIYDVYRFLPPSTQVVLISATLPHEILEIT 222

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 223 SKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 275

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   +++++M  F++G  ++LI T V   GID
Sbjct: 276 FCNTKRKVDWLTEKMRENNFTVSSMHGDMPQKERDNIMKEFRSGQSRVLITTDVWARGID 335

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S++I  +  +     +H++ GR GR       I        +             D
Sbjct: 336 VQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQID 394

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 395 EMPMNVADL 403


>gi|126463236|ref|YP_001044350.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126104900|gb|ABN77578.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 461

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 133/364 (36%), Gaps = 43/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q  AI  ++Q       ++ + Q   G+GKTL   + +   +            +
Sbjct: 32  QPTPIQVEAIPYVMQG----RDLMGLAQ--TGTGKTLAFGLPLLHRLLGVGHPPPPRTIR 85

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   L  Q    ++ +T+ T + V  ITG      + + L R     A I++ T 
Sbjct: 86  ALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQTERLAR----GADIMVATP 141

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +            L+L   D+    G    L+   +               +TL
Sbjct: 142 GRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLK---------RQTL 192

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI------C 489
           + ++     I ++      R+P+K  + P  +  E I +      +G KA  +       
Sbjct: 193 LFSATMPKLIEELAHTYL-REPVKVQVAPPGKPVEKIAQGVHFTPQGDKAKLLESYLQKH 251

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           P+ +       +   E+   L   +      IHG  S   ++  +  F++G+  +L+AT 
Sbjct: 252 PREQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDVLVATD 311

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+     +   +  +     +H++ GR  R     S +    P   +       
Sbjct: 312 VAARGIDIPGVRHVYNYDMPNVPENYVHRI-GRTARAGAEGSAVAFVAPAEMEEFRAVEK 370

Query: 610 VLKN 613
           +LK 
Sbjct: 371 LLKQ 374


>gi|126739425|ref|ZP_01755118.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
 gi|126719525|gb|EBA16234.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
          Length = 468

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 133/357 (37%), Gaps = 27/357 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------AGGQA- 324
            PT  Q  AI   L           +     G+GKT    + + + +       AG    
Sbjct: 49  DPTPIQARAIPHALNGEDV------LGLAQTGTGKTAAFGVPLISRMLDYGRKPAGKTVR 102

Query: 325 -VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  E +K  T+ T + V ++ G +    +   + R       I++ T 
Sbjct: 103 GLVLAPTRELANQIAETLKALTEGTPMKVGLVVGGVSINPQISRIAR----GTDILVATP 158

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    L L   D        Q L L        +         +T++ ++    
Sbjct: 159 GRLLDILDRDALDLGSCDFLVLDEADQMLDLGFIHALRKI-SALLPEERQTMLFSATMPK 217

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--- 500
            +++I      ++P++  + P  +    + +    +++ +K   +   +   K+      
Sbjct: 218 QMNEIANSYL-KRPVRIEVTPPGKPAAKVTQSVHFIAKAEKLSLLKELLANHKDERTLVF 276

Query: 501 ---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +  +E+   + E    + A IHG  S   +E  + +FK+G  K+L+AT V   G+D+
Sbjct: 277 GRTKYGMEKLMRVLEKAGFAAAAIHGNKSQGQRERALAAFKSGEIKVLVATDVAARGLDI 336

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
            D   +      +   A +H++ GR  R  +    +    P   +       V+K T
Sbjct: 337 PDVKFVYNYELPNVPDAYVHRI-GRTARAGKDGEAVAFCAPDEMEELKAIQKVMKIT 392


>gi|26344810|dbj|BAC36054.1| unnamed protein product [Mus musculus]
          Length = 411

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 137/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    +++   ++      QA+I+A
Sbjct: 60  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSVSVLQCLDIQVRETQALILA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 114 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 170 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           +    D  +I  K      + IK   + + R +   + L  +       +A   C     
Sbjct: 230 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT--- 286

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G
Sbjct: 287 ------KRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARG 340

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S+II  +  +     +H++ GR GR       I        +            
Sbjct: 341 LDVPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQ 399

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 400 IDEMPMNVADL 410


>gi|56552313|ref|YP_163152.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241761630|ref|ZP_04759717.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753995|ref|YP_003226888.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|56543887|gb|AAV90041.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373938|gb|EER63471.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258553358|gb|ACV76304.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 458

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 130/346 (37%), Gaps = 29/346 (8%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           L  + +S PT  Q  AI  +L+                G+GKT    +     +    QA
Sbjct: 21  LDGLGYSKPTPIQAQAIPHLLEGKD------LCGIAQTGTGKTAAFALPSIHYLATNPQA 74

Query: 325 --------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                   +I++P   LA Q       YT++ ++ V  + G +P   + + L+R      
Sbjct: 75  RPQRGCRMLILSPTRELASQIARACNDYTRHLRMSVNAVFGGVPIGRQMRMLDR----GT 130

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I++ T     D I    L+L  V+        Q L L        +  +      +TL 
Sbjct: 131 DILVATPGRLLDLIDQRALVLKDVEVFVLDEADQMLDLGFIHALRRIDKLL-PKNRQTLF 189

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     I +++ +     P+   + P +   E +E+  + +++ +K   +   ++   
Sbjct: 190 FSATMPKTIQELSSQFL-SDPVTVSVAPQSSTAERVEQFGIFVNQSEKQALLTITLKNTP 248

Query: 497 ESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +        +   +R     E      A IHG  S   +E  +++F+NG  K+L+AT 
Sbjct: 249 GLDRALVFTRTKHGADRVVRHLEAAGLPAAAIHGNKSQPQRERALNAFRNGRLKILVATD 308

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +   GIDV   S +      +     +H++ GR  R       I  
Sbjct: 309 IAARGIDVPGVSHVFNYELPNVAEQYVHRI-GRTARAGRDGQAISF 353


>gi|269123479|ref|YP_003306056.1| DEAD/DEAH box helicase domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268314805|gb|ACZ01179.1| DEAD/DEAH box helicase domain protein [Streptobacillus moniliformis
           DSM 12112]
          Length = 543

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/375 (20%), Positives = 140/375 (37%), Gaps = 33/375 (8%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N+  ++ + + +    SP++ Q   I ++L     K     I Q   G+GKT    I +
Sbjct: 6   YNLSNEMLEALEKKRFVSPSEIQALVIPELL-----KEETHLIGQAQTGTGKTAAFSIPI 60

Query: 315 AAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
              +    +  A+I+AP   LA Q  + I       ++ +  + G     ++ K L++  
Sbjct: 61  LEKIIPTKKVKALILAPTRELANQVSDEIYSLKGKKEVKILAVYGGASIENQIKNLKK-- 118

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPH-- 422
                I++GT     D I    L L  +        DE    G  + ++L  + T     
Sbjct: 119 --GVDIVVGTPGRVIDMINKGALKLNELEYFVLDEADEMLNMGFIEDIELILEKTNEDKK 176

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSE 481
           +L  +AT     L +      +   +  +        T  I    R ++  E L  VL  
Sbjct: 177 MLFFSATIPKPILAIAKRFMPEHKILKVQKKELTTHLTEQIYFEVRREDKFEALCRVLDY 236

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
               Y I            +S V+   +  +        IHG ++   +E  +D FKN  
Sbjct: 237 KPDFYGIVF-------CRTKSEVDEVTNKLKARNYDAEAIHGDITQGLREKALDLFKNKI 289

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   GIDV + + +I  +      + +H++ GR GR       I    P   
Sbjct: 290 LNILVATDVAARGIDVSNLTHVINYSIPQESDSYVHRI-GRTGRAGNKGIAITFVTP--- 345

Query: 602 KNSYTRLSVLKNTED 616
           + S     + + T+ 
Sbjct: 346 QESRKLAQIKRETKS 360


>gi|308803500|ref|XP_003079063.1| putative DEAD-box RNA helicase DEAD3 (ISS) [Ostreococcus tauri]
 gi|116057517|emb|CAL51944.1| putative DEAD-box RNA helicase DEAD3 (ISS) [Ostreococcus tauri]
          Length = 492

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 132/367 (35%), Gaps = 36/367 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA-AVEAGGQ------- 323
            PT  Q+ AI   LQ          +     GSGKT      + A  ++ G Q       
Sbjct: 20  KPTPVQKYAIPSALQGRD------LMACAQTGSGKTAAFCFPIIAGILKKGLQGGHMNRK 73

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               A++++P   LA Q +E  +K+   T +   +I G  P   + +A+ER       ++
Sbjct: 74  TYPLALVLSPTRELASQIHEESRKFAYQTGVASCVIYGGAPAVEQFRAMER----GCDLL 129

Query: 380 IGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           I T     D I   K+ L       +DE  R          Q         M      +T
Sbjct: 130 IATPGRLIDLIDRAKISLSRCVYLALDEADRMLDMGFEP--QIRQIVEQRDMPPCGERQT 187

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE- 493
           ++ ++    +I ++           TV    +    + + ++ V S  +K+  +   +E 
Sbjct: 188 MLFSATFPREIQRMAADFLDDYIFLTVGRVGSSHALITQSVERVNSYHEKSEMLLDLVEA 247

Query: 494 ----EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +   ++              IHG  +  ++E+ + SF++G   +L+AT 
Sbjct: 248 VPGLTLVFVETKRGADQLEDFLFTNGKPATSIHGDRTQQEREAALKSFRSGKTPILVATD 307

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC-ILLYHPPLSKNSYTRL 608
           V   G+D+   + +I  +         H++ GR GR  +      L       + + + +
Sbjct: 308 VAARGLDIPHVTHVINFDLPSDIDDYTHRI-GRTGRAGKKGRATALFLESKDGQIARSLV 366

Query: 609 SVLKNTE 615
            ++    
Sbjct: 367 DLMSEAN 373


>gi|77413593|ref|ZP_00789780.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 515]
 gi|77160359|gb|EAO71483.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 515]
          Length = 528

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 132/366 (36%), Gaps = 36/366 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     +   +   QA+I+A
Sbjct: 23  EPSPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIHTEDNTIQALIIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ ++  + V  + G      + KAL       AH+++GT     D
Sbjct: 77  PTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRS----GAHVVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT---PIPRTL 435
            I+   L L  +        DE    G        +++   A   LL +AT   PI R +
Sbjct: 133 LIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEARQTLLFSATMPDPIKR-I 191

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +  + + +  KI         +    + +   ++     +++  +  +   +  +    
Sbjct: 192 GVKFMKNPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLMDVDQPELSIVFGRT--- 248

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+
Sbjct: 249 -----KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILVATDVAARGL 303

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+   + +   +      + +H++ GR GR  +    I    P          ++ K   
Sbjct: 304 DISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVSPNEMGYLTIIENLTKKRM 362

Query: 616 DGFLIA 621
            G   A
Sbjct: 363 TGMKPA 368


>gi|312278882|gb|ADQ63539.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           thermophilus ND03]
          Length = 528

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 126/343 (36%), Gaps = 34/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     +   E   QA+++A
Sbjct: 23  QPSPIQELTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLDKIRTEENTIQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ ++  + V  + G      + KAL       AHI++GT     D
Sbjct: 77  PTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLV 436
            I+   L L  +        DE    G        +++       LL +AT     + + 
Sbjct: 133 LIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRIG 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +  + D +  KI  K      +    I +   ++     +++  +  +   +  +     
Sbjct: 193 VQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPELSIVFGRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +        IHG +    +  ++  FKNG   +++AT V   G+D
Sbjct: 249 ----KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDIMVATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +   + +   +      + +H++ GR GR  +    I    P 
Sbjct: 305 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGQSGQSITFVSPN 346


>gi|260777558|ref|ZP_05886451.1| ATP-dependent RNA helicase DbpA [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605571|gb|EEX31856.1| ATP-dependent RNA helicase DbpA [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 458

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 152/423 (35%), Gaps = 60/423 (14%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ ++  T  Q+ A+  +L+          I QG  GSGKT    + + + +      
Sbjct: 18  LNSLNYTEMTPIQQQALPIVLEGKDV------IGQGKTGSGKTAAFTLGLLSNLSVKRFR 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++ P   LA Q  + ++   +    I V  + G MP   +  +LE      AHI++
Sbjct: 72  VQTLVLCPTRELADQVAKEVRTLARGIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 127

Query: 381 GTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D +        +   L+L   D     G ++ +           ++  A    
Sbjct: 128 GTPGRILDHLSKGRINLAEMNTLVLDEADRMLEMGFEEAI---------DAIIDEAPQDR 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++    +I  +  K   R P    +   ++   + +R   + +  ++   +   +
Sbjct: 179 QTLLFSATFPKNIESLASK-VMRDPQMIKVESTHQTTTIEQRFYKLNATEERDDALEALL 237

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              K        N +  V++      H   S+  IHG M   ++E  +  F N +  +L+
Sbjct: 238 LTHKPESSVVFCNTKKEVQKVTDELSHRGFSVVEIHGDMEQREREQALTMFANKSVSILV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV +   +            +H++ GR GR          Y          
Sbjct: 298 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRI-GRTGRAGSKGVAFSFYSEKEEYRVAR 356

Query: 607 RLSVL-----------KNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLI 646
               +           K  E  F    + ++           G+ILG   KQ+G+    I
Sbjct: 357 IDEYMDIAISPAVLPEKPVERPFYPKMQTIQILGGKKQKVRAGDILGALTKQAGLDGKKI 416

Query: 647 AQP 649
            + 
Sbjct: 417 GKI 419


>gi|257068572|ref|YP_003154827.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
 gi|256559390|gb|ACU85237.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
          Length = 669

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 137/367 (37%), Gaps = 40/367 (10%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---G 322
             + F+ P+  Q  AI  +L+          I     G+GKT    + + AA++      
Sbjct: 100 DELGFTTPSAIQAQAIPPLLEGRDV------IGVAQTGTGKTAAFGLPLLAAIDPSLREV 153

Query: 323 QAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+++AP   LA Q  + I  +      + V  + G  P   + +AL R     A +++G
Sbjct: 154 QALVLAPTRELAMQVADAIASFATSIGGLDVVALYGGSPYGPQERALAR----GAQVVVG 209

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D ++   L L  +        DE  R G  + ++            ++ +P  R
Sbjct: 210 TPGRVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFAEDVEEI----------LSHSPDTR 259

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + L S       +   +   + P++  + P +   + + +   V+    +   +   + 
Sbjct: 260 QVALFSATMPAAIQRVAQTHMQDPVRVSVSPQSSTVKSVHQTYAVVPFRHRTGALARVLA 319

Query: 494 EKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        R+  E   +         A I G +   ++E +++  ++G+ ++L+A
Sbjct: 320 TSDAEAAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLVA 379

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV    +++  +      + +H++ GR GR       +    P   +     
Sbjct: 380 TDVAARGLDVERIGLVVNFDVPKEAESYVHRI-GRTGRAGRSGEALTFIGPHERRALKNI 438

Query: 608 LSVLKNT 614
               K T
Sbjct: 439 ERATKQT 445


>gi|51473847|ref|YP_067604.1| ATP-dependent RNA helicase RhlE [Rickettsia typhi str. Wilmington]
 gi|51460159|gb|AAU04122.1| probable ATP-dependent RNA helicase RhlE [Rickettsia typhi str.
           Wilmington]
          Length = 407

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 134/342 (39%), Gaps = 35/342 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQAVIMAPI 330
            PT+ Q+ +I   +           +     GSGKTL  L+ +  A ++    A+I+ P 
Sbjct: 21  EPTEIQKQSIPVAMSG------ADILASSQTGSGKTLAYLLPLIDAFIKNKTTALILVPT 74

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q +  + K T   +I   ++ G  P   +   L++       +IIGT     + +
Sbjct: 75  RELATQIHSTLNKVTIAYKINSAVLIGGEPMFKQFMQLKK----NPKVIIGTPGRIIEHL 130

Query: 391 QYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
               L        +L  +D     G++++L+   K               + L+ ++   
Sbjct: 131 NRRSLKIEHIGIIVLDEMDRMLDMGMKEQLEDINKFLPEK---------RQVLMFSATMP 181

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----E 497
             I  +++K     P++ ++   N+    I++  + +S  +K   +  Q+  +       
Sbjct: 182 KHIIAVSQKYLN-NPVRIMVGATNKAAAEIKQELMHVSNKEKFSELTKQLGNRVGSVIIF 240

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++   + ++       IHG +S   +  V+ SF+    ++++AT V   G+D+
Sbjct: 241 VKTKRSADQLAKMLKYENHKAEAIHGDLSQSQRARVILSFRKLNHRIMVATDVAARGLDI 300

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
                +I  +        LH++ GR GR   I   +    P 
Sbjct: 301 PHTQHVINYDLPMCPEDYLHRI-GRTGRAGAIGHALSFISPD 341


>gi|56696327|ref|YP_166684.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
 gi|56678064|gb|AAV94730.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
          Length = 471

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 138/369 (37%), Gaps = 46/369 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+          +     G+GKT    + M   +  G       +++
Sbjct: 24  TPTPIQAGAIPPALEGRDV------LGIAQTGTGKTASFTLPMITLLARGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    YT++ ++   ++ G +    +   ++R       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDR----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
             D  +  KL+L     ++VDE  R      +   ++       + + TP   +TL  ++
Sbjct: 134 LLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIER-------IFSLTPFTRQTLFFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-------EGKKAYWICPQI 492
               +I +IT       P +  +       E IE+  V+           +K   +   I
Sbjct: 187 TMAPEIERITNTFL-SAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLRALI 245

Query: 493 EEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           + + E         N ++ V+      + +    A IHG +    +   +D F+ G  +L
Sbjct: 246 DAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGKLRL 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+A+ V   G+DV   S +   +        +H++ GR GR       I L  P   K  
Sbjct: 306 LVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRI-GRTGRAGRDGKAITLCIPRDEKAL 364

Query: 605 YTRLSVLKN 613
                +++ 
Sbjct: 365 DAIEKLIQK 373


>gi|313675031|ref|YP_004053027.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312941729|gb|ADR20919.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 590

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/368 (20%), Positives = 145/368 (39%), Gaps = 39/368 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            PT  Q+  I  +L     K  ++ + Q   GSGKT    + +   +++     Q++++ 
Sbjct: 24  EPTAIQQKTIPHLLN---TKQDLIALAQ--TGSGKTAAFGLPVINQIDSDSKKTQSLVLC 78

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q       YT+ ++ + V  + G      + KAL +       I++GT     
Sbjct: 79  PTRELAIQIANDFNSYTKYSKKLDVVPVYGGASIETQIKALNK----GVQIVVGTPGRVV 134

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKAT--APHVLLMTATPIPRTLVL 437
           D I+  KL L  +        DE    G +  L      T      LL +AT     L +
Sbjct: 135 DLIKRKKLKLEDIEWVVLDEADEMLNMGFKDDLDFILSHTPDQRQTLLFSATMSKEVLRI 194

Query: 438 TSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIEE 494
           ++       +I+  ++  G   ++     +N  D+ +   ++  ++    A   C    E
Sbjct: 195 SNNYMNKPEEISSGKRNQGADKVEHFYFVVNGRDKYLALKRIADINPDIYAIIFCRTKRE 254

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            +E + + + + +N+           +HG +S   +++VM  ++    ++L+AT V   G
Sbjct: 255 TQEISDQLMADGYNA---------DCLHGDLSQAQRDAVMGRYRKKNLQMLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV + + +I  N         H+  GR GR  +    + +  P           +L  T
Sbjct: 306 LDVNEITHVINYNIPDDLETYTHR-SGRTGRAGKAGISMAIIGPRDINKIKQLERILGKT 364

Query: 615 EDGFLIAE 622
              F  AE
Sbjct: 365 ---FTKAE 369


>gi|310658279|ref|YP_003936000.1| ATP-dependent RNA helicase, dead/deah box family [Clostridium
           sticklandii DSM 519]
 gi|308825057|emb|CBH21095.1| atp-dependent rna helicase, dead/deah box family [Clostridium
           sticklandii]
          Length = 423

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 131/357 (36%), Gaps = 38/357 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            PTK QE AI  IL+          I +   G+GKTL  ++ +   ++      Q +I+ 
Sbjct: 24  KPTKIQEQAIPLILKGKD------IIGKAQTGTGKTLAFVLPLIQMLDENISIPQVLILT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +++  +++   V  + G      ++  L       A  ++GT     D
Sbjct: 78  PTRELALQITTVVEELLKDSAFDVVSVYGGHDVEKQKNQL----KNNAQFVVGTPGRILD 133

Query: 389 SIQ-----YYKLILVIVDE---QHRFGVQQRLKLTQKATAPHV--LLMTAT--PIPRTLV 436
            I+     +  L  V++DE      FG  + L L    T   +  ++ +AT   + R L 
Sbjct: 134 HIREGSINFKNLKHVVIDEADQMMAFGFMEDLDLLFDKTPQKIQKMIFSATIPDMIRKLA 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
              + +     I  +      I+ V++     R  + +E       +   A   C   E 
Sbjct: 194 RKIMNNAINIDIDPESVVIDNIRQVVVRTTEERRLQSLEMALKE-FKPFMAMIFCKSKER 252

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             E     V  R++         + I+HG  S   +E++M  F+      L+ T +   G
Sbjct: 253 ANELYDNMVNLRYD---------VEILHGDFSQNKRENIMKRFRELKFPFLVTTDISARG 303

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           +D+   + +   +        +H++ GR GR  E    +        +        +
Sbjct: 304 MDIDGITHVFNYDIPRQIEYYIHRV-GRTGRAGEKGIAVSFVADKEVEQMKKIQKTV 359


>gi|284007123|emb|CBA72399.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
          Length = 438

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/371 (18%), Positives = 132/371 (35%), Gaps = 40/371 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+ AI  IL           +     G+GKT   ++ +   +             
Sbjct: 29  KPTSIQQQAIPAILAGKD------LLASAQTGTGKTAGFVLPILQHLSQTPVVVKGKKPV 82

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + ++ Y+Q  ++   ++ G +    +   L     G   I++ T
Sbjct: 83  RALILAPTRELAAQVGQNVRNYSQFLRLKSLVVFGGVSINPQMMKLR----GGVDILVAT 138

Query: 383 HALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP 432
                D +Q           L+L   D     G     R  L +  T    LL +AT   
Sbjct: 139 PGRLLDLVQQNAVSLSQVEILVLDEADRMLDMGFIHDIRRILDKLPTKRQNLLFSATFSN 198

Query: 433 R--TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           +   L  + L +  I ++  + +  + +K +I  +++  +      ++ SE  +   +  
Sbjct: 199 QIKQLANSLLHNPTILEVAPRNSASQQVKQLIHFVDKRRKAELLSYLIGSENWQQVLVFT 258

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +    R              IHG  S   +   +  FK+G  ++L+AT +
Sbjct: 259 RT--------KYGANRLTEHLIKDGIKAMAIHGNKSQGARTRALADFKSGAIRVLVATDI 310

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+     ++     +     +H++ GR GR       + L              +
Sbjct: 311 AARGLDIEQLPYVVNYELPNVAEDYVHRI-GRTGRAAATGLAVSLVAIDEQSLLTAIERL 369

Query: 611 LKNTEDGFLIA 621
           LK +     +A
Sbjct: 370 LKQSIPRMALA 380


>gi|300122033|emb|CBK22607.2| unnamed protein product [Blastocystis hominis]
          Length = 408

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 137/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ AI  I++          I Q   G+GKT V  I +   ++      QA+I++
Sbjct: 18  KPSAIQQRAILPIIKGRDV------IAQSQSGTGKTGVFCIGVLQNIDPSLMETQALILS 71

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q  + +       ++      G    +   + L+        ++ GT     D
Sbjct: 72  PTRELAEQSQKVLLSIGDCMKVQCHACVGGKSLSDDIRRLDY----GVQVVSGTPGRVYD 127

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I    L    +        DE    G +++L    +    A  V+L++AT     L +T
Sbjct: 128 MINRRHLRTRNIKILVIDEGDEMLNQGFKEQLYDIYRYLPPATQVVLVSATMPKEVLDMT 187

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    +  KI  K      + IK   + + R +   + L  + +     +A   C     
Sbjct: 188 SKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYNNLTITQAVIFCNT--- 244

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R  VE   +       +++ +HG M   +++ +M+ F+ G  ++LIAT V   G
Sbjct: 245 ------RRKVEWLAAKLREANFTVSSMHGDMPQKERDRIMEEFRAGNSRVLIATDVWGRG 298

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S++I  +  +     +H++ GR GR       I                     
Sbjct: 299 LDVQQVSLVINYDLPNSRELYIHRI-GRSGRFGRKGVGINFVTNEDISVLRDIEQYYSTQ 357

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 358 IDEMPMNINDL 368


>gi|270156904|ref|ZP_06185561.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
           D-4968]
 gi|289164670|ref|YP_003454808.1| ATP-dependent RNA helicase RhlE [Legionella longbeachae NSW150]
 gi|269988929|gb|EEZ95183.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
           D-4968]
 gi|288857843|emb|CBJ11689.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
           NSW150]
          Length = 421

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 138/380 (36%), Gaps = 39/380 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA 324
           +  + +  P+  Q  AI  IL           +     G+GKT   ++ +   +    +A
Sbjct: 16  IDELGYKEPSSIQIQAIPKILSGKDV------LASAQTGTGKTASFVLPILQMLSTKPRA 69

Query: 325 -------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                  +I+ P   LA Q +E I +Y +       ++ G +    +   L         
Sbjct: 70  NSNRTRTLILTPTRELASQVHENIIQYGRYLSFRSTVVFGGVKINPQMMKLRS----GVE 125

Query: 378 IIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I++ T     D     +IQ+ ++  +++DE  R      +   ++       ++   P  
Sbjct: 126 ILVATPGRLLDLYNQRAIQFDQVDTLVLDEADRMLDMGFIHDMKR-------IINYLPKN 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R  ++ S    D  +   K    +PI+  + P N     I++    + + +KA  +   I
Sbjct: 179 RQNLMFSATFTDEIRSFVKTILNQPIEIDVTPRNTTVVKIKQTVHPVDKNRKAALLSHLI 238

Query: 493 EEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              K +        +    +            A IHG  S   +   ++ FK+G   +L+
Sbjct: 239 HRNKWNQALVFSKTKHGANKLVKQLAEAQIHAAAIHGNKSQSQRTKALNDFKSGELHILV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT +   GID+     ++  +        +H++ GR GR   I   I L          +
Sbjct: 299 ATDIAARGIDIDQLPCVVNFDLPQVAEDYVHRI-GRTGRAGAIGLAISLVSADEVNQLQS 357

Query: 607 RLSVLKNTEDGFLIAEEDLK 626
              ++++  D   I  ED +
Sbjct: 358 IEKLIQHKLDRIEI--EDFE 375


>gi|291613137|ref|YP_003523294.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291583249|gb|ADE10907.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 475

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/461 (16%), Positives = 167/461 (36%), Gaps = 66/461 (14%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + + + T  Q  ++   L           I Q   GSGKT    + +   +      
Sbjct: 33  LQQLEYRTMTPIQAESLPITLAG------NDLIAQAKTGSGKTAAFALPLLTNLNPRRFA 86

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    I +  + G      +R +LE      AHI++
Sbjct: 87  VQAMVLCPTRELADQVTQELRRLARFADNIKILSLVGGSTMRPQRDSLEH----GAHIVV 142

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++   L        +L   D     G    +    K               
Sbjct: 143 GTPGRIMDHLERGSLKLDALNTLVLDEADRMLDMGFYDDIAFVVKHCPAQ---------R 193

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +T++ ++     I+++ +K    +  + V +P       I +    +   ++   +   +
Sbjct: 194 QTMLFSATYPEGIARLAQKF--MRKPQEVKLPEQHEGSKIRQRFYEVKHEERLQAVATLL 251

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +  +        N +        +          ++G M   +++ V+  F N +C +L+
Sbjct: 252 KHYRPVSTLAFCNTKQQCRDLLDVLHAEGIHALTLNGDMEQRERDQVLIQFANRSCSVLV 311

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL------ 600
           AT V   G+D+     +I  +        +H++ GR GR +     + L  P        
Sbjct: 312 ATDVAARGLDIAQLEAVINVDVTPDPEIHIHRI-GRTGRADAEGWALSLASPADMHRISN 370

Query: 601 ------SKNSYTRLSVLKNTEDGFLI-AEEDLKQRK-------EGEILG--IKQSGMPKF 644
                 S+  +  L  +K   D  LI     L+           G++LG    ++G  + 
Sbjct: 371 IAKMVGSEPEWHTLESVKRANDKPLIPPMVTLQILGGRKEKIRPGDVLGALTGEAGFTRE 430

Query: 645 LIAQPELHDS--LLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            + +  + D    + +AR  A+  + +      V+G+++++
Sbjct: 431 QVGKITVTDMSTYVAVARNIAREAVKRLSA-GKVKGKTVKV 470


>gi|210633263|ref|ZP_03297728.1| hypothetical protein COLSTE_01641 [Collinsella stercoris DSM 13279]
 gi|210159181|gb|EEA90152.1| hypothetical protein COLSTE_01641 [Collinsella stercoris DSM 13279]
          Length = 238

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 91/231 (39%), Gaps = 14/231 (6%)

Query: 9   LFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER 68
           L   +S  + V       L ++         R  DLL + P+ ++D      +       
Sbjct: 20  LAEDVSRLKYVSGTREEALRRL------GIERVGDLLLHVPARYLDFSRAYSVESAPLGE 73

Query: 69  IVTITGYISQHSSFQLQKRRPYK--ILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVT 126
           + TI G I + S+    KR      + L D TG + + FF  K   +      G ++ V 
Sbjct: 74  VCTIVGTIDRVSNRPTSKRGMTVTEVFLVDATGVLKIAFF--KQPWIARELAVGERLAVI 131

Query: 127 GKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLP 186
           GK++       M  PHY        +   I  V+ +  G+S    ++++  AL       
Sbjct: 132 GKVEFAYGFKQMAAPHYERLEGDGAS-GTILPVHPVRDGVSQAWMRRLVSVALEGAGSFC 190

Query: 187 EWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQ 237
           + +   L  ++   S++ A   +  PR   +  +    R+RLAYDELL  Q
Sbjct: 191 DPVPAPLRSRRKLMSLSRAVRAVQFPRLMPEVAFA---RKRLAYDELLYLQ 238


>gi|196036086|ref|ZP_03103486.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|195991253|gb|EDX55221.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
          Length = 481

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 140/378 (37%), Gaps = 40/378 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  ++ L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   
Sbjct: 12  SKEVRRALTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+++ P   LA Q  E I    +  +I    I G  P   ++  L++    
Sbjct: 66  VEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFVRQKLELKQ---- 121

Query: 375 QAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
           + HI++GT     D I+           L++   DE    G   ++   + +  T    +
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 425 LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT       L  T +      +I         I+  +  +   +++     V   E 
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIEN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I  + +E  +  +R          +        IHG M   D+  VMD F+ G  
Sbjct: 242 PDSCIIFCRTQENVDHVYRQ--------LDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKF 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + L+AT V   GID+ + + +I  +      + +H+  GR GR       I    P   +
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYEDR 352

Query: 603 NSYTRLSVLKNTEDGFLI 620
                 + +     GF I
Sbjct: 353 FLEEIEAYI-----GFAI 365


>gi|34495838|ref|NP_900053.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34101693|gb|AAQ58061.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 472

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 130/369 (35%), Gaps = 28/369 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +PT  Q  AI  +LQ          +     G+GKT    + +   +           +A
Sbjct: 26  TPTPIQAQAIPQVLQG------GDLLAAAQTGTGKTAGFTLPLLQLLMCSPSHHAGRPRA 79

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y++   +   ++ G +    + KAL         I++ T  
Sbjct: 80  LVLTPTRELAAQVEESVRTYSKYLPLKSLVMFGGVNINPQIKALRAP----VDILVATPG 135

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D +    + L  V E        R+           +L       + L+ ++    +
Sbjct: 136 RLLDHVGQKTVDLSGV-EILVLDEADRMLDMGFIHDIKKVLAKLPAQRQNLLFSATFSDE 194

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----- 499
           I  + +K     P    +   N  +E++ +   ++   KK   +   I E+         
Sbjct: 195 IKALADKLLD-NPKLVEVARRNTTNELVSQKVHLVDRDKKTELLIHLIREQNWFQVLVFT 253

Query: 500 -FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +    R     +      A IHG  S   +   +  FK+G  ++L+AT +   G+D+ 
Sbjct: 254 RTKHGANRLAEKLDKIGIPAAAIHGNKSQNARTRALADFKSGELQVLVATDIAARGLDID 313

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
               ++     +     +H++ GR GR       + L              ++K + + F
Sbjct: 314 QLPHVVNFELPNVPEDYVHRI-GRTGRAGSPGEALSLVCVDEFSFLRDIEKLIKMSIERF 372

Query: 619 LIA--EEDL 625
            +   E DL
Sbjct: 373 TVPGFEADL 381


>gi|19552380|ref|NP_600382.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|21323923|dbj|BAB98549.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
          Length = 732

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 131/343 (38%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q   I  +++          +     G+GKT    + + A ++      QA+++A
Sbjct: 124 TPSPIQAQTIPILMEGQDV------VGLAQTGTGKTAAFALPILARIDKSVRSPQALVLA 177

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  + +  +   + V  I G      +   L R     AHI++GT     
Sbjct: 178 PTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRR----GAHIVVGTPGRII 233

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRTL 435
           D ++           L+L   DE    G Q+ +   L        V L +AT     R L
Sbjct: 234 DHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVALFSATMPNGIRRL 293

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L +     +  +      I    + +   +++    +++     +A  +  + + +
Sbjct: 294 SKQYLNNPAEITVKSETRTNTNITQRFLNVAHRNKMDALTRILEVTEFEAMIMFVRTKHE 353

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E       E    L     S+ AI +G ++   +E  +D  K+G   +L+AT V   G+
Sbjct: 354 TE-------EVAEKLRARGFSAAAI-NGDIAQAQRERTVDQLKDGRLDILVATDVAARGL 405

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV   S ++  +  +   + +H++ GR GR       IL   P
Sbjct: 406 DVERISHVLNFDIPNDTESYVHRI-GRTGRAGRTGEAILFVTP 447


>gi|14211584|dbj|BAB56110.1| vasa short form [Oreochromis niloticus]
          Length = 621

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 131/366 (35%), Gaps = 37/366 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 205 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQQLMADGAAASCFSEM 258

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               A+I+AP   L  Q Y   +K+   T +   ++ G +   H+ + L R  +    ++
Sbjct: 259 QEPDAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGHQIRDLLRGCN----VL 314

Query: 380 IGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L  V     DE  R                    M +    +T
Sbjct: 315 CGTPGRLLDMIGRGKVGLTKVRYLVLDEADRMLDMGFEP--DMRRLVGSPGMPSKENRQT 372

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE- 493
           L+ ++    DI ++         +   +  +      +E+  V +++  K   +   ++ 
Sbjct: 373 LMFSATFPEDIQRLAADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKFAKREQLIDLLKS 432

Query: 494 -----EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   ++          IHG      +E  +  F++G C +L+AT
Sbjct: 433 TGSERTMVFVETKRQADFIATILCQEKFPTTSIHGDREQWQREQALGDFRSGKCSVLVAT 492

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-PLSKNSYTR 607
           +V   G+D+ D   ++  +  +     +H++ GR GR       +  Y P   S+ + + 
Sbjct: 493 SVGARGLDIPDVQFVVNFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFYDPGADSELARSL 551

Query: 608 LSVLKN 613
           +++L  
Sbjct: 552 VTILSK 557


>gi|11990882|dbj|BAB19807.1| vasa [Oreochromis niloticus]
          Length = 645

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 131/366 (35%), Gaps = 37/366 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 229 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQQLMADGAAASCFSEM 282

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               A+I+AP   L  Q Y   +K+   T +   ++ G +   H+ + L R  +    ++
Sbjct: 283 QEPDAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGHQIRDLLRGCN----VL 338

Query: 380 IGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L  V     DE  R                    M +    +T
Sbjct: 339 CGTPGRLLDMIGRGKVGLTKVRYLVLDEADRMLDMGFEP--DMRRLVGSPGMPSKENRQT 396

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE- 493
           L+ ++    DI ++         +   +  +      +E+  V +++  K   +   ++ 
Sbjct: 397 LMFSATFPEDIQRLAADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKFAKREQLIDLLKS 456

Query: 494 -----EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   ++          IHG      +E  +  F++G C +L+AT
Sbjct: 457 TGSERTMVFVETKRQADFIATILCQEKFPTTSIHGDREQWQREQALGDFRSGKCSVLVAT 516

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-PLSKNSYTR 607
           +V   G+D+ D   ++  +  +     +H++ GR GR       +  Y P   S+ + + 
Sbjct: 517 SVGARGLDIPDVQFVVNFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFYDPGADSELARSL 575

Query: 608 LSVLKN 613
           +++L  
Sbjct: 576 VTILSK 581


>gi|330448509|ref|ZP_08312157.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492700|dbj|GAA06654.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 432

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 131/363 (36%), Gaps = 28/363 (7%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  I +   T  Q  AI    +          +     G+GKT    + +   +      
Sbjct: 16  LTEIGYEKLTPVQAKAIPQARRG------ADILALAQTGTGKTAAFSLPIIQKLIDTPKS 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+I+AP   LA+Q    I  YT+ T I    + G    + + K LE+      
Sbjct: 70  KSRFNVRALILAPTRELAEQIANNISDYTKYTSITCTAVFGGKKMSSQEKRLEQ----GV 125

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I++ T     + ++   + L  + E   F    R+       A  V+L      P+T++
Sbjct: 126 DILVATPGRLIEHMELNNVSLANL-EFLIFDEADRMLDMGFIGAIRVILDDIRTKPQTML 184

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     ++ +       KP +  + P N   + +  +   + E +K   +   I +K 
Sbjct: 185 FSATSSAQMNALAAD-ILHKPQRITVTPENSTADTVSHVVYPVDEDRKTELLSELIGKKN 243

Query: 497 ESN---FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                 F +  E  N L +          + HG  +   +   ++ FK G  ++++AT V
Sbjct: 244 WRQVLVFVNYKETANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATEV 303

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ +   ++  +        +H++ GR GR  +  + I                +
Sbjct: 304 AARGLDIQNLPYVVNYDMPFLAEDYVHRI-GRTGRAGQKGNAISFVSREEELTLVQIERL 362

Query: 611 LKN 613
           +  
Sbjct: 363 IGQ 365


>gi|307203141|gb|EFN82321.1| ATP-dependent RNA helicase p62 [Harpegnathos saltator]
          Length = 410

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 134/377 (35%), Gaps = 42/377 (11%)

Query: 262 AQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
              ++    F  PT  Q       +        M+ I  G  GSGKTL  ++     + A
Sbjct: 1   MNAMINKFGFQEPTAIQAQGWPIAM----SGYNMVGI--GQTGSGKTLGYILPAIVHINA 54

Query: 321 --------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                   G  A+I+AP   LAQQ       +   + +    I G  P+  + + L R  
Sbjct: 55  QERLNHGDGPIALILAPTRELAQQIQSVTTDFGSLSYVRSTCIFGGAPRGGQARDLRR-- 112

Query: 373 HGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPH 422
                I I T     D ++           L+L   D     G   Q R  + Q      
Sbjct: 113 --GVEICIATPGRLIDFLEQGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 170

Query: 423 VLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKP----IKTVIIPINRIDEVIERLK 476
           VL+ +AT     RTL    L +     I             I  V     +  ++   L+
Sbjct: 171 VLMWSATWPKEVRTLAKEYLKNYVQLNIGSLTLAANHDILQIVEVCEEYEKEAKLKTLLE 230

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            +    + +  I   +E KK+       E        F      IHG  S  +++ V+  
Sbjct: 231 NIHDANEDSSKIIIFVETKKKV------ESITRSIRRFGWPAVCIHGDKSQHERDFVLRE 284

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+N    +L+AT V   G+DV D   +I  +        +H++ GR GR     +   L+
Sbjct: 285 FRNKKSSILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRI-GRTGRSGNTGTSYALF 343

Query: 597 HPPLSKNSYTRLSVLKN 613
            P  ++ +   ++VLK 
Sbjct: 344 TPQNARQARDLINVLKE 360


>gi|300781459|ref|ZP_07091313.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
 gi|300533166|gb|EFK54227.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
          Length = 675

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/377 (20%), Positives = 137/377 (36%), Gaps = 41/377 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           ++ + F  P++ Q   I  +++          +     G+GKT    + + A ++     
Sbjct: 85  IKRVGFESPSQIQAETIPLLMEGRDV------VGLAQTGTGKTAAFALPILARIDTSARY 138

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+AP   LA Q  +  + +  +   I V  I G      +   L R     A II+
Sbjct: 139 PQALILAPTRELALQVSDSFQSFADHLGGISVLPIYGGQAYGIQLSGLRR----GAQIIV 194

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++           L+L   DE    G Q+ +   L        V L +AT 
Sbjct: 195 GTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVALFSATM 254

Query: 431 I--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    L D +   +  K      I    +     +++    +V+      A  +
Sbjct: 255 PNAIRRISHDYLNDPEEVTVKAKTRTNTNITQRYLFTAHRNKLDAITRVLEVTEFDAMIV 314

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +         +   E           S A I+G ++   +E  +D  ++G   +L+AT
Sbjct: 315 FVRT--------KQETEEIAEKLRARGFSAAAINGDIAQQQRERTVDMLRDGRLDILVAT 366

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S ++  +  +   + +H++ GR GR       +L   P         L
Sbjct: 367 DVAARGLDVERISHVLNYDIPNDTESYVHRI-GRTGRAGRTGEALLFVTPRE----RRML 421

Query: 609 SVLKNTEDGFLIAEEDL 625
             ++    G  I E DL
Sbjct: 422 RSIEKVT-GAKIEEMDL 437


>gi|242059637|ref|XP_002458964.1| hypothetical protein SORBIDRAFT_03g043450 [Sorghum bicolor]
 gi|241930939|gb|EES04084.1| hypothetical protein SORBIDRAFT_03g043450 [Sorghum bicolor]
          Length = 578

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/390 (18%), Positives = 140/390 (35%), Gaps = 37/390 (9%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           N      Q I ++    PT  Q       L+          I     GSGKTL  L+   
Sbjct: 165 NFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRD------LIGIAQTGSGKTLSYLLPGL 218

Query: 316 AAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             V A        G   +I+AP   LA Q  E   K+   ++     + G  P+  + + 
Sbjct: 219 VHVGAQPRLEQGDGPIVLILAPTRELAVQIQEESTKFGSYSRTRSTCVYGGAPKGPQIRD 278

Query: 368 LERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
           L R       I+I T     D ++       ++  +++DE  R          +K     
Sbjct: 279 LRR----GVEIVIATPGRLIDMLEAGHTNLRRVTYLVLDEADRMLDMGFEPQIRK----- 329

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            ++    P  +TL  ++    ++  +  +        T+  P  + +  I+++  V+S+ 
Sbjct: 330 -IVAQIRPDRQTLYWSATWPREVEALARQFLQNPYKVTIGSPELKANHSIQQIVEVISDH 388

Query: 483 KKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +K   +   + +  +          +   ++              IHG  +  +++ V+ 
Sbjct: 389 EKYPRLSKLLSDLMDGSRILIFFQTKKDCDKITRQLRMDGWPALSIHGDKAQAERDYVLA 448

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   ++ AT V   G+DV D   +I  +        +H++ GR GR     +    
Sbjct: 449 EFKSGKSPIMAATDVAARGLDVKDIKCVINYDFPTTLEDYIHRI-GRTGRAGASGTAFTF 507

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           +    +K S   + +L+        A E +
Sbjct: 508 FTHANAKFSRNLVKILREAGQAVNPALESM 537


>gi|229000239|ref|ZP_04159808.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock3-17]
 gi|228759571|gb|EEM08548.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock3-17]
          Length = 481

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 140/371 (37%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L ++ +  PT+ Q   I   L+      +   +++   GSGKT    I +   +E     
Sbjct: 19  LTSLKYEQPTEVQGKVIPVALE------KKDLVVKSQTGSGKTASFGIPLCEMIEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E I    +  +I    + G  P A ++  L++    + HI++G
Sbjct: 73  PQALILTPTRELAVQVKEDITNIGRFKRIKATAVYGKSPFARQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+           L++   DE    G   ++   + +  T    +L +AT  
Sbjct: 129 TPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTMLFSATLP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +I         I+ +++ +   ++      +   E   +  I 
Sbjct: 189 EDVENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREEEKFSLLQDITTLENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  FR          +        IHG M   D+ +VM+ FK G  + L+AT 
Sbjct: 249 CRTQENVDHVFRQ--------LKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P   +       
Sbjct: 301 VAARGIDIENITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFVTPYEERFLVEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|195452524|ref|XP_002073391.1| GK13178 [Drosophila willistoni]
 gi|194169476|gb|EDW84377.1| GK13178 [Drosophila willistoni]
          Length = 395

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/389 (19%), Positives = 142/389 (36%), Gaps = 37/389 (9%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            +N++ ++ + I       P+  Q+ +IK I++          I Q   G+GKT    I+
Sbjct: 26  AMNLKEELLRGIYAYGFEKPSAIQQRSIKPIVKGRDV------IAQAQSGTGKTATFSIS 79

Query: 314 MAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           +  +++      Q + ++P   LA Q  + I        +   +  G        + L+ 
Sbjct: 80  ILQSLDTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDY 139

Query: 371 IAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKL--TQKATA 420
                 HI+ GT     D I+           L+L   DE    G ++++         A
Sbjct: 140 GQ----HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 195

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVV 478
             V+L++AT     L +TS    D  +I  K      + IK   + + R +   + L  +
Sbjct: 196 TQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 255

Query: 479 LSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
                  +A   C           +  V+           +++ +HG M   +++ +M  
Sbjct: 256 YDTLTITQAVIFCNT---------KRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKE 306

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G  ++LI T V   GIDV   S++I  +  +     +H++ GR GR       I   
Sbjct: 307 FRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFV 365

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
                +             D   +   DL
Sbjct: 366 KSDDIRILRDIEQYYSTQIDEMPMNVADL 394


>gi|110598174|ref|ZP_01386451.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans
           DSM 13031]
 gi|110340188|gb|EAT58686.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans
           DSM 13031]
          Length = 418

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/381 (16%), Positives = 139/381 (36%), Gaps = 37/381 (9%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                +++   I + +      +PT  Q  AI  +LQ          +     G+GKT  
Sbjct: 1   MQFHSLDIIEPILKSLQEEGYTTPTPIQAEAIPIVLQG------NDLLGCAQTGTGKTAA 54

Query: 310 ALIAMAAAVEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
             I +   +            +++I+ P   LA Q  E  + Y ++T +   +I G + Q
Sbjct: 55  FAIPILQLLSESHSNEKKRKIRSLILTPTRELAIQIGESFRAYGRHTGLNNTVIFGGVNQ 114

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQ 416
             +  AL         I+I T     D +         + + ++DE  R      +   +
Sbjct: 115 NPQISALRN----GVDIVIATPGRLLDLMNQGFLNLRDVEIFVLDEADRMLDMGFIHDIK 170

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           K      +L       ++L  ++    +I ++        P +  + PI+   ++I++  
Sbjct: 171 K------VLAVLPKKKQSLFFSATLPPEIVRLAGT-ILHNPSEVSVTPISSTVDIIQQHI 223

Query: 477 VVLSEGKKAYWICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
             + +G K   +   ++++        +  +   ++      H       IHG  +   +
Sbjct: 224 YFVDKGNKNSLLVDILKDQSIKTALVFTRTKHGADKVVKFLSHHNIRAEAIHGNKAQNAR 283

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           +  + +FKN T ++L+AT +   GIDV +   +I     +     +H++ GR GR     
Sbjct: 284 QRALSNFKNQTTRVLVATDIAARGIDVDELEYVINFEISNIAETYVHRI-GRTGRAGAKG 342

Query: 591 SCILLYHPPLSKNSYTRLSVL 611
           +          +       ++
Sbjct: 343 TAYSFCDAEEKEYLRDIEKLI 363


>gi|110680325|ref|YP_683332.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456441|gb|ABG32646.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 433

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/362 (16%), Positives = 136/362 (37%), Gaps = 43/362 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQA----- 324
            PT  Q+ AI   +        ++ + Q   G+GKT    + + A +    G  A     
Sbjct: 24  DPTPIQKQAIPHAMNG----RDVMGLAQ--TGTGKTAAFGVPLVAQMLELDGRPAPKSVR 77

Query: 325 -VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q    ++ + +NT++ V ++ G     ++ K LER       +++ T 
Sbjct: 78  GLVLAPTRELATQISVNLRSFAENTKVKVAMVVGGQSINNQIKRLER----GVDLLVATP 133

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +            L+L   D+    G    L+                   +T+
Sbjct: 134 GRLLDLMDRRAVRLDEAVFLVLDEADQMLDMGFIHDLRKIASVIPKE---------RQTM 184

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     ++++      R PI+  + P  +  + + +    +++ +K   +   +++ 
Sbjct: 185 LFSATMPKQMNELANSYL-RSPIRVEVSPPGKAADKVTQEVHFIAKSEKPGLLIEMLDKH 243

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           ++         +   E+          +   IHG  S   ++  + +FK+G  K+L+AT 
Sbjct: 244 RDERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAFKSGEIKVLVATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D   +   +  +     +H++ GR  R  +  + I    P           
Sbjct: 304 VAARGLDIPDVKHVYNYDLPNVPDNYVHRI-GRTARAGKDGAAIAFCAPDEMGELKAIQK 362

Query: 610 VL 611
            +
Sbjct: 363 TM 364


>gi|238059366|ref|ZP_04604075.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           sp. ATCC 39149]
 gi|237881177|gb|EEP70005.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           sp. ATCC 39149]
          Length = 576

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/354 (21%), Positives = 128/354 (36%), Gaps = 40/354 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           L  + +  PT  Q  AI  +L           + Q   G+GKT    + +   +  G   
Sbjct: 41  LSALGYEEPTPIQREAIPPLLAGRD------LLGQAATGTGKTAAFALPLLHRMPDGRAG 94

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               A+++ P   LA Q  E   +Y ++    V  I G  P   + +AL+        ++
Sbjct: 95  GEPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDL----GVDVV 150

Query: 380 IGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT 429
           + T     D I    L        +L   DE    G  + +   L         +L +AT
Sbjct: 151 VATPGRALDHIARGTLRLGGLATVVLDEADEMLDMGFAEDIEAILEHAPQQRQTVLFSAT 210

Query: 430 PIPRTLVLTSLGDIDISKI----TEKPAGRKP-IKTVIIPINRIDEVIERLKVVLSEGKK 484
              R   +      D  +I     ++ AG  P ++     + R  +     +V+  E   
Sbjct: 211 MPSRIDGMARQHLTDPVRIQIGREQQVAGETPRVRQSAYIVARAHKPAALGRVLDVESPT 270

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  +  +         R  V+R              +HG MS   ++ VM   + GT  L
Sbjct: 271 AAIVFCR--------SREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADL 322

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           L+AT V   G+DV   + ++  +      + +H++ GRVGR       I L  P
Sbjct: 323 LVATDVAARGLDVEQLTHVVNYDVPSAPESYVHRI-GRVGRAGREGVAITLAEP 375


>gi|262169246|ref|ZP_06036939.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262022527|gb|EEY41235.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
          Length = 406

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 144/366 (39%), Gaps = 35/366 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 22  EPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 75

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  E + +      +    + G + +  ++ AL        +I++ T     D 
Sbjct: 76  TRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALAE----NPNILVATTGRLFDL 131

Query: 389 ---SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               ++  ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 132 TQSGLRLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTAGVRQTVMCSATFSDD 184

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 185 LKLKTQQLMRVPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 244

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S  ++E+ +  FKNG+ ++LIAT ++  GI +  
Sbjct: 245 AKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATDLLARGIHIEQ 304

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPLS----KNSYTRLSVLKNT 614
             ++I           +H++ GR  R  +    + L+ H  +       + T+  +    
Sbjct: 305 LPVVINFELPMHAETYVHRV-GRTARAGQQGIALSLVCHGEMDALNAIRTLTQRQLPVQN 363

Query: 615 EDGFLI 620
            DGF +
Sbjct: 364 LDGFPV 369


>gi|251780900|ref|ZP_04823820.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243085215|gb|EES51105.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 432

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 132/369 (35%), Gaps = 31/369 (8%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +  QK L    ++ PT  QE +I  +L+          +     G+GKT    I +   +
Sbjct: 10  EPIQKALTEAGYTNPTPIQEQSIPSLLEGKD------FLGCAQTGTGKTAAFAIPVLQNI 63

Query: 319 EAGG---------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                        +A+I+AP   LA Q  E    Y+++T I   +I G + Q  + + L 
Sbjct: 64  AKNQNKSDKSRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTRILG 123

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
                   I+I T     D I    + L  V          R+           ++    
Sbjct: 124 E----GVDILIATPGRLLDLIDQKYIDLSNVKHFV-LDEADRMFDMGMVRDVKKIVAKLP 178

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            + + L+ ++    ++  +      + P+K  + P++   + I +    +++  K   + 
Sbjct: 179 KVRQNLLFSATMPSEVKSLVNS-ILKDPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLV 237

Query: 490 PQIEEK-------KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             ++++                     L +  T S AI HG  S   ++  + +FK G  
Sbjct: 238 HLLKDESIKSLLVFSRTKYGANNIVKDLAKTGTESQAI-HGNKSQNARQLALSNFKEGKI 296

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+AT +   GIDV   S +I  +        +H++ GR GR       I         
Sbjct: 297 RVLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRI-GRTGRAGNSGVAISFCDVDEKS 355

Query: 603 NSYTRLSVL 611
                   +
Sbjct: 356 ALKDIEKTI 364


>gi|163755613|ref|ZP_02162732.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
 gi|161324526|gb|EDP95856.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
          Length = 438

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 124/358 (34%), Gaps = 30/358 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L+      R   +     G+GKT    + M   +           +A
Sbjct: 23  TPSPIQAKAIPLVLE------RKDVLASAQTGTGKTAGFTLPMLQLLSQQPPLRKRPIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q Y  +K+Y+    I   +I G +    +   L         I++ T  
Sbjct: 77  LILTPTRELAAQVYANVKEYSTFLDIRSTVIFGGVNARPQIATLRN----GVDILVATPG 132

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D      L L  V E        R+           ++       + L+ ++    D
Sbjct: 133 RLLDLHSQKALSLAKV-EMLVLDEADRMLDMGFLRDIKRVIELVPKRRQNLLFSATFSKD 191

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----- 499
           I K+ +      P+     P N   E + +    + + +K   +   I E   S      
Sbjct: 192 IKKLAQS-ILHHPVSVEATPENTTAEKVNQKVYKVDKPRKTELLIKLISEGNWSQVLVFT 250

Query: 500 -FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +    R          S A IHG  +   +   +D FK GT ++L+AT +   G+D+ 
Sbjct: 251 RTKHGANRLTKKLIAKHISAAAIHGNKTQNARTKALDGFKKGTIRILVATDIAARGLDIP 310

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
               +I     +     +H++ GR GR       I L     S   Y  +  ++   D
Sbjct: 311 LLPHVINFELPNVPEDYVHRI-GRTGRAGASGEAISLV----SAEEYEYVRGIEKLLD 363


>gi|269468447|gb|EEZ80112.1| hypothetical protein Sup05_1361 [uncultured SUP05 cluster
           bacterium]
          Length = 461

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 155/423 (36%), Gaps = 58/423 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + S T  Q+ ++  IL           I QG  GSGKT    + +   ++     
Sbjct: 19  LATLGYQSMTPIQQLSLPAILSGKDV------IGQGKTGSGKTAAFGLGLLQKLDVKSFK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    I+K  +    I V  + G  P   +  +LE       HI++
Sbjct: 73  AQSIVLCPTRELADQVATEIRKLARAIHNIKVLTLCGGAPFGPQIGSLEH----GVHIVV 128

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQ--RLKLTQKATAPHVLLMTATP 430
           GT    ++ ++   L L  +        D     G Q      + +  +    LL +AT 
Sbjct: 129 GTPGRIEEHLRKGTLKLGSITTLVLDEADRMLDMGFQDTIDEIIEKIPSKRQTLLFSAT- 187

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  +   +   +    + E P+  +   IK      N  D+ +  L+++L++ K    +
Sbjct: 188 FPNEIASIAERVMQNPTMVEAPSTHEESTIKQYFYKANSADDRMTALRLLLAKHKPESVL 247

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    +      +  + L  +   ++AI HG +   +++  +  F N +  +L+AT
Sbjct: 248 I------FCNTKIDTQDVADELVYYGFYALAI-HGDLDQRERDQALIRFSNKSVSVLVAT 300

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK--NSYT 606
            V   G+D+    +++  N  H     +H++ GR GR         LY    +   ++  
Sbjct: 301 DVAARGLDIDALDMVVNFNIAHDPEVHVHRI-GRTGRAGRSGIACTLYGDRETHKLDALE 359

Query: 607 RLSVLKNTEDGF-----------LIAEEDLKQ-------RKEGEILG--IKQSGMPKFLI 646
                    D                   LK         + G+I+G    + G+P   I
Sbjct: 360 LDIDFDRYTDPLPSDSYLDKLIKKPLMTTLKIDGGKKQKLRPGDIVGGLTGKGGIPGDKI 419

Query: 647 AQP 649
            + 
Sbjct: 420 GKI 422


>gi|194744201|ref|XP_001954583.1| GF18341 [Drosophila ananassae]
 gi|194903996|ref|XP_001980981.1| GG24917 [Drosophila erecta]
 gi|195055753|ref|XP_001994777.1| GH14195 [Drosophila grimshawi]
 gi|195110945|ref|XP_002000040.1| GI24868 [Drosophila mojavensis]
 gi|195391782|ref|XP_002054539.1| GJ24512 [Drosophila virilis]
 gi|195499068|ref|XP_002096791.1| GE25867 [Drosophila yakuba]
 gi|190627620|gb|EDV43144.1| GF18341 [Drosophila ananassae]
 gi|190652684|gb|EDV49939.1| GG24917 [Drosophila erecta]
 gi|193892540|gb|EDV91406.1| GH14195 [Drosophila grimshawi]
 gi|193916634|gb|EDW15501.1| GI24868 [Drosophila mojavensis]
 gi|194152625|gb|EDW68059.1| GJ24512 [Drosophila virilis]
 gi|194182892|gb|EDW96503.1| GE25867 [Drosophila yakuba]
          Length = 399

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 141/387 (36%), Gaps = 33/387 (8%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            +N++ ++ + I       P+  Q+ +IK I++          I Q   G+GKT    I+
Sbjct: 30  AMNLKEELLRGIYAYGFEKPSAIQQRSIKPIVKGRDV------IAQAQSGTGKTATFSIS 83

Query: 314 MAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           +  +++      Q + ++P   LA Q  + I        +   +  G        + L+ 
Sbjct: 84  ILQSLDTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDY 143

Query: 371 IAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKL--TQKATA 420
                 HI+ GT     D I+           L+L   DE    G ++++         A
Sbjct: 144 GQ----HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 199

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVV 478
             V+L++AT     L +TS    D  +I  K      + IK   + + R +   + L   
Sbjct: 200 TQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL--- 256

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
                  Y      +     N +  V+           +++ +HG M   +++ +M  F+
Sbjct: 257 ----CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 312

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++LI T V   GIDV   S++I  +  +     +H++ GR GR       I     
Sbjct: 313 AGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKS 371

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDL 625
              +             D   +   DL
Sbjct: 372 DDIRILRDIEQYYSTQIDEMPMNVADL 398


>gi|71897163|ref|NP_001025820.1| eukaryotic initiation factor 4A-III [Gallus gallus]
 gi|82197884|sp|Q5ZM36|IF4A3_CHICK RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|53127756|emb|CAG31207.1| hypothetical protein RCJMB04_3e17 [Gallus gallus]
          Length = 412

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 61  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 114

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 115 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 170

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 171 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 230

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 231 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 283

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 284 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 343

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 344 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 402

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 403 EMPMNVADL 411


>gi|20149756|ref|NP_619610.1| eukaryotic initiation factor 4A-III [Mus musculus]
 gi|42560197|sp|Q91VC3|IF4A3_MOUSE RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|14198152|gb|AAH08132.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|15277517|gb|AAH12862.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|74138617|dbj|BAE27130.1| unnamed protein product [Mus musculus]
 gi|74142343|dbj|BAE31931.1| unnamed protein product [Mus musculus]
 gi|74146845|dbj|BAE41387.1| unnamed protein product [Mus musculus]
 gi|74186129|dbj|BAE34233.1| unnamed protein product [Mus musculus]
 gi|74188979|dbj|BAE39256.1| unnamed protein product [Mus musculus]
 gi|74212198|dbj|BAE40258.1| unnamed protein product [Mus musculus]
 gi|74214032|dbj|BAE29433.1| unnamed protein product [Mus musculus]
 gi|74220630|dbj|BAE31525.1| unnamed protein product [Mus musculus]
 gi|122889626|emb|CAM14996.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|123264877|emb|CAM18884.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|148702746|gb|EDL34693.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 [Mus musculus]
          Length = 411

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    +++   ++      QA+I+A
Sbjct: 60  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSVSVLQCLDIQVRETQALILA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 114 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 170 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 230 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 282

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 283 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 342

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 343 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 401

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 402 EMPMNVADL 410


>gi|328852836|gb|EGG01979.1| hypothetical protein MELLADRAFT_78893 [Melampsora larici-populina
           98AG31]
          Length = 537

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 132/366 (36%), Gaps = 44/366 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            P+  Q  A    L           +     GSGKT+   +     + A        G  
Sbjct: 129 EPSPIQCQAWPMALSGRDV------VAISATGSGKTIAFSLPAMIHINAQPLLAPGDGPI 182

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA Q      K+  +++I    + G +P+  + + L R     A I+I T 
Sbjct: 183 VLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQIRDLSR----GAEIVIATP 238

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPR 433
               D ++  +        L++   D     G + ++   L Q       L+ +AT    
Sbjct: 239 GRLIDMLESRRTNLQRVTYLVMDEADRMLDMGFEPQIKKILEQIRPDRQTLMFSATWPKE 298

Query: 434 TLVLTSLGDIDISKIT------EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              L +    D  ++               I  V     +  ++I+ L+ + +E  K   
Sbjct: 299 IQRLANEYLKDFIQVNVGSLELTANVNITQIVEVCSDFEKKGKLIKHLEKISAESAKVLI 358

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        R   +    L +    S+AI HG     +++ V+  FK+G   ++IA
Sbjct: 359 FV--------GTKRVADDLTKYLRQDGWPSLAI-HGDKQQTERDWVLGEFKSGRSPIMIA 409

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D + +I  +  +     +H++ GR GR     +          K +   
Sbjct: 410 TDVASRGLDVKDVAYVINYDMPNGIEDYIHRI-GRTGRAGRTGTAYSYISADQGKLAREL 468

Query: 608 LSVLKN 613
           + +L++
Sbjct: 469 VKILQD 474


>gi|322389137|ref|ZP_08062700.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           903]
 gi|321144179|gb|EFX39594.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           903]
          Length = 523

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 134/362 (37%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     ++      QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIDVDNTVIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    + 
Sbjct: 135 KRKALKLDHIETLILDEADEMLNMGFLEDIEA-------IISRVPETRQTLLFSATMPEA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRS 502
            K       ++P    I       +++++  + + EG+K   +   ++ ++      F  
Sbjct: 188 IKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVEQPELAIVFGR 247

Query: 503 VVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKTGQSITFVSPNEMGYLQIIENLTKKRMKGMK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|301112965|ref|XP_002998253.1| eukaryotic initiation factor 4A-III, putative [Phytophthora
           infestans T30-4]
 gi|262112547|gb|EEY70599.1| eukaryotic initiation factor 4A-III, putative [Phytophthora
           infestans T30-4]
          Length = 406

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 140/372 (37%), Gaps = 39/372 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK  +Q          I Q   G+GKT V  I++  +++      QA++++
Sbjct: 55  KPSAIQQRAIKPAIQGRD------LIAQSQSGTGKTAVFSISILQSLDTSSNETQALVVS 108

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q  + +        +      G        + L+        ++ GT     D
Sbjct: 109 PTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRRLDF----GVQVVSGTPGRIFD 164

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        ++   DE    G ++++    +            P  + L++++ 
Sbjct: 165 MIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLP---------PSTQVLLVSAT 215

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              ++  +T K    +P+K ++       E I++  V +  E  K   +C   +      
Sbjct: 216 MPQEVLDLTRKFMN-EPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQ 274

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N +  V+   S       +++ +HG M   +++++M  F++G  ++LI T V   
Sbjct: 275 AVIFCNTKRKVDWLTSKMREANFTVSAMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGR 334

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV   S++I  +  +     +H++ GR GR       I        +           
Sbjct: 335 GLDVQQVSLVICYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKDDDIRILRDIEQYYST 393

Query: 614 TEDGFLIAEEDL 625
             D   +   DL
Sbjct: 394 QIDEMPMNVADL 405


>gi|251764757|sp|B5FZY7|IF4A3_TAEGU RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|197128100|gb|ACH44598.1| putative DEAD box polypeptide 48 [Taeniopygia guttata]
          Length = 410

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 59  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 112

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 113 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 168

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 169 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 228

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 229 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 281

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 282 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 341

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 342 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 400

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 401 EMPMNVADL 409


>gi|89053691|ref|YP_509142.1| DEAD/DEAH box helicase-like [Jannaschia sp. CCS1]
 gi|88863240|gb|ABD54117.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
          Length = 644

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/399 (17%), Positives = 144/399 (36%), Gaps = 49/399 (12%)

Query: 244 RKQFKKEIGIP-INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           R+ +        +++  K+ + I+     SPT  Q  AI   L           +     
Sbjct: 4   RQDWTPMTTFADLDLNPKVQKAIVEAGYESPTPIQAGAIPPALAGRDV------LGIAQT 57

Query: 303 GSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           G+GKT    + M   +  G       +++++ P   LA Q  E    Y ++ ++   ++ 
Sbjct: 58  GTGKTASFTLPMITMLARGRARARMPRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLI 117

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQR 411
           G +    + +A+++       ++I T     D  +  KLIL     ++VDE  R      
Sbjct: 118 GGVSFKEQEQAIDK----GVDVLIATPGRLLDHFERGKLILNDVKVMVVDEADRMLDMGF 173

Query: 412 LKLTQK-----ATAPHVLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
           +   ++           L  +AT  P    +  T L + +  ++  +      I+  +I 
Sbjct: 174 IPDIERIFGLVPFTRQTLFFSATMAPEIERITNTFLSNPEKIEVERQSTTSATIEQRLIE 233

Query: 465 IN----------RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
                       + D +   +       + A   C +         +  V+      +  
Sbjct: 234 FKAPRRDAQAKMKRDMLRAAITAEGDAFRNAIIFCNR---------KVDVDIVAKSLKKH 284

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             +   IHG +    +   +  F++G+  LL+A+ V   G+D+ + S +I  +       
Sbjct: 285 NLNAEPIHGDLDQSHRMRTLAGFRDGSITLLVASDVAARGLDIPNVSHVINYDVPSHAED 344

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            +H++ GR GR  +    I L  P   K       ++K 
Sbjct: 345 YVHRI-GRTGRAGKTGVAITLCVPSDEKYLGAIEGLIKQ 382


>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 571

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 131/379 (34%), Gaps = 47/379 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q +AI  +L           +     G+GKT    + +   +             
Sbjct: 123 TPTPIQANAIPVVLSGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 176

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 177 PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 232

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 233 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 292

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    A    +  ++  +   D+    +K++     K   +
Sbjct: 293 SPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVIV 352

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      A IHG  S  ++   +D+FK G  + L+AT
Sbjct: 353 F--------CNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEALVAT 404

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 405 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 463

Query: 609 SVLKNTEDGFLIAEEDLKQ 627
            ++K T     ++ E L+ 
Sbjct: 464 KLIKRT-----LSLETLEL 477


>gi|302414752|ref|XP_003005208.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Verticillium
           albo-atrum VaMs.102]
 gi|261356277|gb|EEY18705.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Verticillium
           albo-atrum VaMs.102]
          Length = 1145

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 146/393 (37%), Gaps = 47/393 (11%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----- 318
           IL ++ +  PT  Q  A+  ++           I     GSGKT+  L+ M   +     
Sbjct: 533 ILADLGYERPTSIQMQALPCLMSGRDV------IGVAKTGSGKTMAFLLPMFRHIKDQKP 586

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
              + G   +IM P   LA Q +   K + +   +      G  P   +   L+R     
Sbjct: 587 IRGDDGPIGLIMTPTRELAVQIHRDCKPFLKPMGMRAVCAYGGAPIKDQIADLKR----G 642

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A I++ T     D +           ++  V++DE  R           K      +   
Sbjct: 643 AEIVVCTPGRMIDLLGANQGRVTNLRRVSYVVLDEADRMFDMGFEPQVMK------IFAN 696

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++     I  +T+K   + P++  +   + +   I +   VL EG K + 
Sbjct: 697 MRPDRQTILFSATMPRIIDSLTKK-VLKSPVEVTVGGRSVVAPEITQKVEVLDEGDKFFH 755

Query: 488 ICPQI-------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
           +   +       E+ +   F    E+ + L +   +       IHG    +D++S +  F
Sbjct: 756 LLGLLGELYEEDEDARSLIFVERQEKADDLLKELMTKGYPCMSIHGGKDQVDRDSTISDF 815

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   +LIAT+V   G+DV    +++  +A +     +H+  GR GR     + +    
Sbjct: 816 KKGIVPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNKGTAVTYIT 874

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
                 +      L+    G  + E   + RK 
Sbjct: 875 SEQENCAPGIAKALEQ--SGQPVPERLNEMRKA 905


>gi|329115283|ref|ZP_08244038.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
 gi|326695726|gb|EGE47412.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
          Length = 488

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 127/363 (34%), Gaps = 38/363 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           +PT  QE +I  +LQ          +     G+GKT    + +   +            +
Sbjct: 72  TPTPIQERSIPYLLQGRD------LLGLAQTGTGKTASFALPILEHLIKNPRANTPKQPR 125

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   L  Q  +  K Y ++ +    ++ G + Q  + +A+ R       +++   
Sbjct: 126 VLVLAPTRELVAQISDSFKAYARHMKFTQAVVFGGVGQGRQVEAMRR----GVDVLVAAP 181

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVL 437
               D      I    L ++++DE  R      ++           +MT  P   +TL+ 
Sbjct: 182 GRLLDLMGQGFIDLSGLEILVLDEADRMLDMGFVRDI-------RRIMTFVPEQRQTLLF 234

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++     I  +            V  P + +D + + +  V   G K   +   +E  K 
Sbjct: 235 SATMPRSIEDLAASLLNDPARVEVAPPSSTVDRIQQAVMFVNGAGDKRDALLNMVESPKV 294

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           S        +    +              IHG  S   +E  M  F++G+ K+L+AT + 
Sbjct: 295 SRAVVFTLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGFRSGSVKVLVATDIA 354

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV D S +   +  +   + +H++ GR  R       +                 +
Sbjct: 355 ARGIDVDDVSHVFNYDLPNVPESYVHRI-GRTARAGRDGWAVSFCDAEQRAWLRDIERTI 413

Query: 612 KNT 614
             T
Sbjct: 414 GKT 416


>gi|270262252|ref|ZP_06190524.1| hypothetical protein SOD_b04600 [Serratia odorifera 4Rx13]
 gi|270044128|gb|EFA17220.1| hypothetical protein SOD_b04600 [Serratia odorifera 4Rx13]
          Length = 460

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/456 (17%), Positives = 175/456 (38%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + ++  T  Q +A+  IL+    +       +   GSGKT    I +   +      
Sbjct: 19  LNELGYAEMTPVQAAALPAILKGQDVR------AKAKTGSGKTAAFGIGLLDKINVSQVA 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+ P   LA Q  + +++  + TQ I +  + G  P   +  +L        HI++
Sbjct: 73  AQALILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGPQLDSLVHA----PHIVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L+L  + +        R+     A     ++    P  +TL+ ++ 
Sbjct: 129 GTPGRIQEHLRKKTLVLDEL-KVLVLDEADRMLDMGFADDIDDVISYTPPQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I +I+ +   ++    V +        IE+     +  ++   +   I   +    
Sbjct: 188 YPSGIERISARV--QRDPLNVEVDDGDDQTSIEQRFYETTRDQRPAVLVSAIRHYQPSSC 245

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +      E    S++ +HG +   D++ V+  F N +C++L+AT V   G
Sbjct: 246 VVFCNTKRDCQSVYEALEARGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+ +  +++           +H++ GR GR       I L  P   + ++      +  
Sbjct: 306 LDIKELELVVNYELAFDPEVHVHRI-GRTGRAGLNGLAISLCTPQEMERAHAIEEYQRKA 364

Query: 615 EDGFLIAE---------------------EDLKQRKEGEILG--IKQSGMPKFLIAQPEL 651
            +   ++E                        K R  G+ILG     +G+    + + ++
Sbjct: 365 VNWAPVSELSGASNTTLEAEMVTLCIDGGRKAKIR-PGDILGALTGDAGLTAAEVGKIDM 423

Query: 652 H--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
               + + I +  A+  L Q      ++G++ ++ L
Sbjct: 424 FPVHAYVAIRKASARKALQQL-QQGKIKGKNCKVRL 458


>gi|224824946|ref|ZP_03698052.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224602617|gb|EEG08794.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 438

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 128/361 (35%), Gaps = 39/361 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
           +PT  Q ++I   L           ++    GSGKT   L+     +         G + 
Sbjct: 23  TPTPVQAASIPAALAGHD------LLVSAQTGSGKTAAFLLPSLQKLTERSTGSGQGPRI 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LAQQ  +   +Y      +    + G     ++ +A+ R       I++ T 
Sbjct: 77  LVLTPTRELAQQVEKNATEYGSQLRWLRTVCLVGGASFGYQIRAMARP----VDIMVATP 132

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVL 437
               D      I + +L ++I+DE  R      ++  +        ++ ATP   +T++ 
Sbjct: 133 GRLMDHMRSGRIDFSRLEMLILDEADRMLDMGFIEDIET-------IVKATPDSRQTVLF 185

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+ +K   R P +  I        + E L        K   +   ++E   
Sbjct: 186 SATLDGTVGKLAQK-LTRDPQRIEIAREETGGNIEEHLLYADDNRHKERLLDHILKEAGF 244

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   E           + A +HG M    +   ++  + G  ++L+AT V 
Sbjct: 245 DQAVIFTATKIGSEELADKLSDQGYAAACLHGDMPQNWRNRTLNDLRRGRVRILVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV   + ++  +        +H++ GR GR       I L               L
Sbjct: 305 ARGIDVPTITHVVNYDLPKQAEDYVHRI-GRTGRAGRDGVAITLAESKEFHKVRRIEQYL 363

Query: 612 K 612
           K
Sbjct: 364 K 364


>gi|218887215|ref|YP_002436536.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758169|gb|ACL09068.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 531

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 128/349 (36%), Gaps = 36/349 (10%)

Query: 266 LRNIPFSPT-KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           +  + F  T   Q  AI  IL+          I Q   G+GKT    I +   +   E  
Sbjct: 19  IEEMGFEETSPIQALAIPHILEGRDV------IGQAQTGTGKTAAFGIPLLERIDPREKD 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +I+ P   LA Q  E + +   +   + V  + G  P   + KAL R     A +++
Sbjct: 73  IQGIILCPTRELAIQVAEELTQLASRKRGLYVLPVYGGQPIDRQFKALRR----GAQVVV 128

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATP 430
           GT     D ++   + L  V        DE    G +  ++    Q       +  +AT 
Sbjct: 129 GTPGRVMDHMERGTINLSTVRMAVLDEADEMLDMGFRDDIEHILGQVPGEAQTVFFSATM 188

Query: 431 IPRTLVLT--SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  L +    L   +  K+T+K      I+ +   +    ++    +V+     K   +
Sbjct: 189 PPAILDMAQRFLKTPEFLKVTQKQVTVPSIEQIYYEVRPFQKLEALCRVLDLYNPKRAIV 248

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     + +  V+      +        +HG ++   ++ VM  F++   ++L+AT
Sbjct: 249 F--------CSTKRGVDELTQHLQGRGYQADGLHGNLNQSQRDRVMARFRSNGIEILVAT 300

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            V   GIDV D   ++  +  +     +H++ GR GR            
Sbjct: 301 DVAARGIDVDDVEAVVNYDIPNAVEHYVHRI-GRTGRAGRSGRAFTFVS 348


>gi|182418672|ref|ZP_02949948.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237669697|ref|ZP_04529674.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377449|gb|EDT75004.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237654771|gb|EEP52334.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 524

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 136/349 (38%), Gaps = 33/349 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           + ++ F+ P++ QE +I   L           I Q   G+GKT    + +   +    G 
Sbjct: 19  ISDLGFTKPSQIQEQSIPVTLSG------ADLIGQAQTGTGKTAAYSLPILTKMSTNKGI 72

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  + + + ++  +  +  + G      + +AL +       +++GT
Sbjct: 73  KALILAPTRELAVQVKDEMNRLSKYEKAEILAVYGGDSIDRQIRALRK----GVDVVVGT 128

Query: 383 HALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLV 436
                D I+   L L  V     DE         +   +        +++ TP   +TL+
Sbjct: 129 PGRMLDLIKRKCLHLDSVEFLVLDEADEMLNMGFIDDIES-------ILSHTPEERQTLL 181

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE--- 493
            ++     I+K+ ++          +   +     IE+   +++   +   +C  ++   
Sbjct: 182 FSATMPDPIAKLAKRYMKPDAKLVSVKKSSLTVSKIEQSYFMINNKHRLEALCRLLDLDN 241

Query: 494 EKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                 F       + L +   S    +  +HG M+   + + +  FK GT  LLIAT V
Sbjct: 242 PSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLSKFKEGTLNLLIATDV 301

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              GIDV   + +   +      + +H++ GR GR     +   L  P 
Sbjct: 302 AARGIDVDGVTHVFNYDLPQDVESYVHRI-GRTGRANREGTAYSLVTPK 349


>gi|221200134|ref|ZP_03573177.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2M]
 gi|221206713|ref|ZP_03579725.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2]
 gi|221173368|gb|EEE05803.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2]
 gi|221180373|gb|EEE12777.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2M]
          Length = 480

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 126/363 (34%), Gaps = 30/363 (8%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------- 318
             + ++ PT  Q+ AI  +L           +     G+GKT    + +   +       
Sbjct: 17  NELGYTSPTPIQQQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHTFYTEH 70

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
              +   +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             I++ T     D +Q   + L  +D         R+           +L    P  + L
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDLSDLD-ILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNL 185

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I  + +      P    +   N   E + +    +   +K   +   I E 
Sbjct: 186 LFSATFSDEIKALADSLLD-SPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREH 244

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +    R          S   IHG  S   +   +  FKN T ++L+AT 
Sbjct: 245 NWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTLQVLVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   GID+     ++  +  +     +H++ GR GR       + L      +       
Sbjct: 305 IAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLVCVDEKQLLRDIER 363

Query: 610 VLK 612
           ++K
Sbjct: 364 LIK 366


>gi|221119958|ref|XP_002163544.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53
           [Hydra magnipapillata]
          Length = 745

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 128/367 (34%), Gaps = 45/367 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---------GG 322
            P+  Q  A   +L  M        I     G+GKTL  L+     ++          G 
Sbjct: 294 EPSPIQCQAWPVLLSGMD------CIGIAQTGTGKTLAFLLPAFIHIDGQPIPRDKRGGP 347

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             ++++P   LAQQ    +KK      I    I G   ++ +   + +       IIIGT
Sbjct: 348 SCLVLSPTRELAQQIEMEVKK-FHYRGIRSVCIYGGGDRSAQINLVRQ----GVEIIIGT 402

Query: 383 HALFQDSIQYY--------KLILVIVDEQHRFGVQ--QRLKLTQKATAPHVLLMTATPIP 432
                D +            L+L   D     G +   +  L         ++ +AT  P
Sbjct: 403 PGRLNDLLMNGFFSVKSVTYLVLDEADRMLDMGFEPEIKKILLDIRPDRQTIMTSATWPP 462

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTV------IIPINRIDEVIERLKVVLSEGKKAY 486
               +      D  +I       +   +V      I    + D V++ +  +  +GK   
Sbjct: 463 GVQRMADKYLRDPIRINVGSLDLQACHSVSQLVEFIEQHEKQDRVMDFISAMAPDGKLII 522

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           ++  ++     S+  ++        +     I  IHG     D+E  ++  K G  ++LI
Sbjct: 523 FVGRKVTADDISSNLAM--------KGTNIGIQCIHGDRDQSDREQALEDMKTGAARVLI 574

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ D + ++  +        +H++ GR GR       +         +   
Sbjct: 575 ATDVASRGLDIKDLTHVLNYDFPRHIEDYVHRI-GRTGRAGRSGCALTFVTREDWMHVAK 633

Query: 607 RLSVLKN 613
            + +++ 
Sbjct: 634 LIPIMEE 640


>gi|89096784|ref|ZP_01169676.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. NRRL B-14911]
 gi|89088799|gb|EAR67908.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. NRRL B-14911]
          Length = 480

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 149/378 (39%), Gaps = 40/378 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  Q+ L  + +  PT+ Q   I   ++      +   +++   GSGKT    I +   
Sbjct: 11  SEEIQRALGVLKYESPTEVQSKVIPLAME------KQDLVVKAQTGSGKTASFGIPVCDM 64

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+I+ P   LA Q  E I    +  +I    + G  P   +++ L++    
Sbjct: 65  VEWEEKSPQALILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFTKQKEELKQ---- 120

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVL 424
           + H+++GT     D I    L+L  +        DE    G    +   + +  +    +
Sbjct: 121 KTHVVVGTPGRVMDHIDRETLVLDRIQYLIIDEADEMLNRGFIDEVEAIIKELPSDRVTM 180

Query: 425 LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           + +AT       L    + D    +I       + I+ +++ + + D++     + ++E 
Sbjct: 181 VFSATLPKDVEALCHEYMKDPVHVEIESTGVTAETIEHLLMEVKQEDKISLLKDITVTEN 240

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I  + +E  ++        +  L     SS   +HG +   D+ +VM+ FK G  
Sbjct: 241 PDSCLIFCRTKEHVDT-------VYTELDGAGYSS-ERLHGGLEQEDRFAVMEGFKMGNY 292

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + L+AT V   GID+ + S++I  +      + +H+  GR GR       I    P   K
Sbjct: 293 RYLVATDVAARGIDIDNVSLVINYDVPMEKESYVHR-TGRTGRAGNKGKAITFATPFEEK 351

Query: 603 NSYTRLSVLKNTEDGFLI 620
                   +     GF I
Sbjct: 352 FLKAIERYI-----GFEI 364


>gi|327438469|dbj|BAK14834.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 517

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 89/455 (19%), Positives = 167/455 (36%), Gaps = 75/455 (16%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           ++ + F   T  QE  +   +           + Q   G+GKT    I +   ++     
Sbjct: 17  IKRMGFEEATPIQEGTVTFAMAGRDV------LGQAQTGTGKTAAFGIPLIEKIDPKNPN 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++AP   LA Q  E + K   + ++ +  + G      + +AL      +  II+G
Sbjct: 71  IQALVIAPTRELAIQVSEELYKLGYDKRVKLLSVYGGQEIGRQIRAL----KNKPQIIVG 126

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATPI 431
           T    QD I    L L  V        DE    G    +   L    +    LL +AT  
Sbjct: 127 TPGRIQDHINRRTLRLDEVQTLVLDEADEMLNMGFIDDINAILENVPSDRQTLLFSATMP 186

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P  R +  T + D +I KI  K    + I+   +     ++     +++ S+  +   I 
Sbjct: 187 PAIRKIAETFMKDPEIVKIKAKELTMENIEQFFVKATEREKFDALSRLLDSQKPELAIIF 246

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            + +            R + L +           IHG +S   + SV+  FK G   +LI
Sbjct: 247 GRTKR-----------RVDELSQALGLRGFLAEGIHGDLSQAKRISVLRQFKEGKIDILI 295

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+   + +   +      + +H++ GR GR  +    +    P        
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKSGVAVTFVTPRE----MG 350

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
            L +++ T           K+R                 +  P   ++L+ +     + +
Sbjct: 351 YLRIVEETT----------KKR--------------MTPLRPPSSEEALVGLQEDAMQSL 386

Query: 667 LT--QDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           +   Q+ DL + R  + ++L    + N+A   + A
Sbjct: 387 VELVQNNDLGTYRELAAKLL----ENNDALDLVAA 417


>gi|258620096|ref|ZP_05715135.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|258587454|gb|EEW12164.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
          Length = 464

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 128/344 (37%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G +       A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPRVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A +++ T  
Sbjct: 77  LILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQ---RMCKG-ADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRK-------ILKLLPEKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                  +   K     P++  + P N     +E+        KK   +   ++E     
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
 gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
           DSM 20162]
          Length = 602

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/365 (21%), Positives = 134/365 (36%), Gaps = 36/365 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  P+  Q + I  +L      N ++ + Q   G+GKT    + + + ++     
Sbjct: 43  LAEVGYENPSPIQAATIPPLLAG----NDVVGLAQ--TGTGKTAAFAVPVLSKIDGESRT 96

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++AP   LA Q  E   KY  +   I  + I G      +   L R     A II+
Sbjct: 97  PQALVLAPTRELALQVSEAFGKYAVHMPNITVLPIYGGQSYGVQLSGLRR----GAQIIV 152

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE    G Q+ +   L        V L +AT 
Sbjct: 153 GTPGRVIDHLEKGTLDLSNLEFLVLDEADEMLTMGFQEDVERILADTPEFKQVALFSATM 212

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  R +    L D     +  K A    I    + +    ++    +++  E      I
Sbjct: 213 PPAIRKIAKKYLHDPVEISVKAKTATGSNITQRYLQVAHQRKLDALTRLLEVEEFDGMII 272

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +   E       E    L     ++ AI +G +    +E  +   K+G   +L+AT
Sbjct: 273 FVRTKSATE-------ELAEKLRARGHAAAAI-NGDIVQAQRERTIGQLKDGKVDILVAT 324

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S ++  +  H   + +H++ GR GR       +L   P          
Sbjct: 325 DVAARGLDVERISHVVNYDIPHDTESYVHRI-GRTGRAGRKGDALLFVTPRERHLLRAIE 383

Query: 609 SVLKN 613
              + 
Sbjct: 384 KATRQ 388


>gi|121701983|ref|XP_001269256.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|143359917|sp|A1CQA9|PRP5_ASPCL RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|119397399|gb|EAW07830.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 1192

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 142/379 (37%), Gaps = 47/379 (12%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ++  + +  PT  Q  AI  I+           I     GSGKT+  LI M   ++    
Sbjct: 571 VIERLGYESPTSIQSQAIPAIMSGRDV------IGVAKTGSGKTVAFLIPMFRHIKDQRP 624

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +IM P   LA Q ++  K + +   +      G  P   +   L+R     
Sbjct: 625 LDNMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKR----G 680

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A I++ T     D +           ++  V++DE  R           K      ++  
Sbjct: 681 AEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMK------IMAN 734

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K A  KPI+ ++   + +   I ++  V +E  K   
Sbjct: 735 IRPDRQTVLFSATFPRNMEALARK-ALTKPIEIIVGGRSVVAPEITQIVEVRNEDTKFVR 793

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  ++L             IHG    ID++S ++
Sbjct: 794 LLEILGNLYSDDANEDARSLIFVERQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIE 853

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    +++  +A +     +H+  GR GR     + +  
Sbjct: 854 DFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 912

Query: 596 YHPPLSKNSYTRLSVLKNT 614
                 + S      LK +
Sbjct: 913 LTEEQERYSVDIAKALKQS 931


>gi|116511209|ref|YP_808425.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106863|gb|ABJ72003.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 551

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 89/438 (20%), Positives = 157/438 (35%), Gaps = 67/438 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE  IK  L+          + Q   G+GKT    +     + A     QA+++A
Sbjct: 23  QPTPIQEETIKLALEGRDV------LGQAQTGTGKTAAFGLPTIEKINAENPAIQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ ++  + V  + G      + K L+      AHI++GT     D
Sbjct: 77  PTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLKA----GAHIVVGTPGRLVD 132

Query: 389 SIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+           LIL   DE    G  + +    + T  +          +TL+ ++ 
Sbjct: 133 LIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEN---------RQTLLFSAT 183

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---E 497
              DI KI  K   + P    I       + I++  V   E +K   +   ++ ++    
Sbjct: 184 MPADIKKIGVKFM-KNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLLDVERPQLA 242

Query: 498 SNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F     R + L             +HG +    + +V+  FK G   +L+AT V   G
Sbjct: 243 IVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVATDVAARG 302

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH-------------PPLS 601
           +DV   + +   +      + +H++ GR GR  +    +                     
Sbjct: 303 LDVSGVTHVYNYDITQDQESYVHRI-GRTGRAGKSGRSVTFVSYNEMGYLRAIEKLTNKE 361

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                  +  +  +    +A +D+  R   +     +SG  K          SLLE  + 
Sbjct: 362 MKGLKPPTKEEAYQASLSVAMDDV-LRDLSD-----ESGKAKLAKFDK-QAASLLE--KF 412

Query: 662 DAKHILT-------QDPD 672
           DAK ++        +DPD
Sbjct: 413 DAKELVALLLQGRVKDPD 430


>gi|288942738|ref|YP_003444978.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288898110|gb|ADC63946.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 662

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 136/371 (36%), Gaps = 36/371 (9%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
             +  + ++N+ +  PT  Q   I  +L           + Q   G+GKT    + M + 
Sbjct: 17  SPVIAQAVKNLGYESPTAIQSQCIPHLLAGRD------LLGQAQTGTGKTAAFALPMLSR 70

Query: 318 VEAG---GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAH 373
           ++      Q +++ P   LA Q  E  ++Y        V  I G      +   L+R   
Sbjct: 71  LDPDLRKPQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGLQLSQLKR--- 127

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHV 423
               +I+GT     D I+   L L  +        DE    G  + +     Q      V
Sbjct: 128 -NPQVIVGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQAPAERQV 186

Query: 424 LLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            L +AT  P  R +  T L D    KI         I+     + R  ++    +++  E
Sbjct: 187 ALFSATMPPAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRFHKLDVLTRIMELE 246

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 I  + +        +  E  + L  H  ++   ++G M+   +E  ++  K G 
Sbjct: 247 PFDGLLIFVRTKN-------ATTELADKLKAHGFAA-EPLNGDMNQEMRERTVERLKQGQ 298

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   G+DV   S ++  +      A +H++ GR GR       ILL  P   
Sbjct: 299 LDVLVATDVAARGLDVERISHVVNYDIPTDPSAYVHRI-GRTGRAGRAGRAILLVEPRER 357

Query: 602 KNSYTRLSVLK 612
               +   V++
Sbjct: 358 GLLKSIERVIR 368


>gi|195502160|ref|XP_002098101.1| GE24123 [Drosophila yakuba]
 gi|194184202|gb|EDW97813.1| GE24123 [Drosophila yakuba]
          Length = 719

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 134/378 (35%), Gaps = 41/378 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       +           +     GSGKTL  ++     +          G  
Sbjct: 305 APTAIQAQGWPIAMSG------SNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPI 358

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++  ++ +    + G  P+  + + L+R       I+I T 
Sbjct: 359 ALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE----IVIATP 414

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     S    +   +++DE  R          +K  +         P  +TL+ +
Sbjct: 415 GRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR------PDRQTLMWS 468

Query: 439 SLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    ++ ++ E   G      +    +   + I +V++       E K    +    + 
Sbjct: 469 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDT 528

Query: 495 KKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           +  V+        F      IHG  S  +++ V+  F++G   +L+A
Sbjct: 529 SESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 588

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV     +I  +        +H++ GR GR     +    +    +K +   
Sbjct: 589 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRI-GRTGRSNTKGTSFAFFTKNNAKQAKAL 647

Query: 608 LSVLKNTEDGFLIAEEDL 625
           + VL+        A E+L
Sbjct: 648 VDVLREANQEINPALENL 665


>gi|118470234|ref|YP_889292.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium smegmatis str. MC2 155]
 gi|118171521|gb|ABK72417.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium smegmatis str. MC2 155]
          Length = 581

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 128/343 (37%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           SP+  Q + I  +L           +     G+GKT    I + + ++      QA+++A
Sbjct: 43  SPSAIQAATIPPMLAG------SDVVGLAQTGTGKTAAFAIPILSKIDTSRRDTQALVLA 96

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y  +   + V  I G      +   L R     A +++GT     
Sbjct: 97  PTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSGLRR----GAQVVVGTPGRVI 152

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRTL 435
           D ++   L        +L   DE    G  + +   L        V L +AT     R +
Sbjct: 153 DHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYKQVALFSATMPAAIRKI 212

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D     +  K A  + I    I +    ++    +++  E   A  +  +    
Sbjct: 213 TTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILEVEEGDAMIVFVRT--- 269

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E      +    + A I+G ++   +E  + + K+GT  +LIAT V   G+
Sbjct: 270 -----KQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIATDVAARGL 324

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV   S +I  +  H   + +H++ GR GR       +L   P
Sbjct: 325 DVERISHVINYDIPHDTESYVHRI-GRTGRAGRSGHAVLFVTP 366


>gi|120555341|ref|YP_959692.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120325190|gb|ABM19505.1| ATP-dependent RNA helicase CsdA [Marinobacter aquaeolei VT8]
          Length = 528

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 131/343 (38%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q  +I  +L           +     G+GKT    + + + ++A     Q +++A
Sbjct: 46  TPSPIQAQSIPALLAG------NHLLGVAQTGTGKTAAFALPLLSRIDANVAEPQILVLA 99

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E    Y    +    + I G    + + + L+R     A +I+GT     
Sbjct: 100 PTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFSPQIRGLKR----GAQVIVGTPGRML 155

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--L 435
           D ++           L+L   DE  R G    +   L +        L +AT  P+   +
Sbjct: 156 DHLRKGTLKLDGLKALVLDEADEMLRMGFIDDVEAILAKTPDTCQRALFSATMPPQIKKV 215

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L +    +I  +    + I   ++P+    ++    +++  E   A  I  +    
Sbjct: 216 AQTYLKNATEVRIESETRTVERIAQFVLPVYAERKLDALTRILEVEPFDASIIFVRT--- 272

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++              ++A + G ++   +E  ++  K G   ++IAT V   G+
Sbjct: 273 -----KAETTMLAEKLSARGHAVAPLSGDLNQRQREQTVEDLKRGKKDIIIATDVAARGL 327

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV   + +I  +  +   A +H++ GR GR       ILL  P
Sbjct: 328 DVPRITHVINYDVPYDTEAYIHRV-GRTGRAGRTGKAILLVTP 369


>gi|77409647|ref|ZP_00786319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
 gi|77171747|gb|EAO74944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
 gi|319744779|gb|EFV97119.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
          Length = 528

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 132/366 (36%), Gaps = 36/366 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     +   +   QA+I+A
Sbjct: 23  EPSPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIHTEDNTIQALIIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ ++  + V  + G      + KAL       AH+++GT     D
Sbjct: 77  PTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRS----GAHVVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT---PIPRTL 435
            I+   L L  +        DE    G        +++   A   LL +AT   PI R +
Sbjct: 133 LIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEARQTLLFSATMPDPIKR-I 191

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +  + D +  KI         +    + +   ++     +++  +  +   +  +    
Sbjct: 192 GVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLMDVDQPELSIVFGRT--- 248

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+
Sbjct: 249 -----KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILVATDVAARGL 303

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+   + +   +      + +H++ GR GR  +    I    P          ++ K   
Sbjct: 304 DISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVSPNEMGYLTIIENLTKKRM 362

Query: 616 DGFLIA 621
            G   A
Sbjct: 363 TGMKPA 368


>gi|149191663|ref|ZP_01869906.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1]
 gi|148834504|gb|EDL51498.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1]
          Length = 460

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/408 (20%), Positives = 148/408 (36%), Gaps = 58/408 (14%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ + S T  Q  A+  IL           I QG  GSGKT    + + + +      
Sbjct: 19  LDSLGYASMTPIQAEALPKILAGKDV------IGQGKTGSGKTAAFSLGVLSNLRVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 73  VQSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 128

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATP 430
           GT     D ++  +        L+L   D     G +      + Q       LL +AT 
Sbjct: 129 GTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGFKDALDAIIDQAPKERQTLLFSATF 188

Query: 431 IPR--TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL--SEGKKAY 486
             +  T+    +   ++ K+  K      IK      N ++E    L+ +L   + + A 
Sbjct: 189 PEQIQTIAARVMKQPEVVKVESK-HDHSSIKQFFYQTNTLEERDNALENLLLTHQPESAV 247

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C   +E +           + LH H   S+  IHG +   D++  +  F N +  +L+
Sbjct: 248 VFCNTKKEVQ--------NVADELH-HRGFSVIDIHGDLEQRDRDQALVQFANKSVSILV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV +   +   +        +H++ GR GR          Y          
Sbjct: 299 ATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRI-GRTGRAGNKGLAFSFYSEKEFYRVAR 357

Query: 607 RLSVL-----------KNTEDGFLIAEEDLKQRK-------EGEILGI 636
               +           K++   F      ++ +         G+ILG 
Sbjct: 358 IDEYMDMPIEPSELPAKSSNQPFQAKMVTIQIQGGKKQKLRPGDILGA 405


>gi|301067543|ref|YP_003789566.1| superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
 gi|300439950|gb|ADK19716.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
          Length = 502

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 124/348 (35%), Gaps = 39/348 (11%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAV 325
            F   T  Q   I  +L           I Q   G+GKT    + +   ++      QA+
Sbjct: 20  GFEEATPIQAETIPLVLAGKDV------IGQAQTGTGKTAAFGLPILQNIDKADRSIQAL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +++P   LA Q  E + +  Q+ +I V+ + G      + + L         I++GT   
Sbjct: 74  VISPTRELAIQTQEELYRLGQDKKIKVQAVYGGADIRRQIRQLSE----HPQIVVGTPGR 129

Query: 386 FQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D I            L+L   DE    G    ++           +       +TL+ 
Sbjct: 130 ILDHIGRHTLKLQNLKVLVLDEADEMLDMGFIDDIEKI---------VEQMPTARQTLLF 180

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I ++T K    +P+   I       + +E+  V   + +K   +    + +  
Sbjct: 181 SATIPASIMRLTNKFM-HEPVTVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDP 239

Query: 497 --ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L     +       IHG ++   + SV+  FK+G    L+AT V 
Sbjct: 240 DLALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVA 299

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+   + +   +      + +H++ GR GR       +    P 
Sbjct: 300 ARGLDISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGHKGVSVTFVTPN 346


>gi|116668332|pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
           A Resolution
          Length = 374

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    +++   ++      QA+I+A
Sbjct: 23  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSVSVLQCLDIQVRETQALILA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 77  PTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 132

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 133 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 192

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 193 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 245

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 246 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       +        +             D
Sbjct: 306 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAVNFVKNDDIRVLRDIEQYYSTQID 364

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 365 EMPMNVADL 373


>gi|39951881|ref|XP_363657.1| hypothetical protein MGG_01583 [Magnaporthe oryzae 70-15]
 gi|152032663|sp|A4RK80|PRP28_MAGO7 RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|145020572|gb|EDK04701.1| hypothetical protein MGG_01583 [Magnaporthe oryzae 70-15]
          Length = 674

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 142/386 (36%), Gaps = 52/386 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----------A 320
            PT  Q +AI   LQ          I     GSGKT   ++ M + +E            
Sbjct: 279 EPTPVQRAAIPIALQCRD------LIGISKTGSGKTAAFVLPMLSYIEPLPPLNEVTKTE 332

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+I+AP   LA Q    + K+       V  + GN       +         A II+
Sbjct: 333 GPYALILAPTRELATQIQAEVIKFATRMGFTVVCLIGN---KRTIEEDAFALRNGAEIIV 389

Query: 381 GTHALFQDSIQYYKLILVI-----VDEQHRF---GVQQRLKLT-------------QKAT 419
            T     D ++ + L+L       +DE  R    G +  +                + A 
Sbjct: 390 ATPGRLVDCLERHLLVLSQCSYVVLDEADRMVDGGFEDSIHKILAALPPSNGKPDDRDAE 449

Query: 420 APHVLLMTATP---IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
            P+++    TP     +T++ ++     + +I +       + T+      +D V ++  
Sbjct: 450 DPNIMSKFLTPNLRYRQTVMYSATMPPSVERIAKNYLKHPAMVTIGTIGEAVDTVEQQAM 509

Query: 477 VVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            V+SE ++   +   +             N +S  +      +  + S   +HG  +   
Sbjct: 510 WVVSEDERRNKLRAMLNTYGTGKLVIVFVNTKSNCDAVAKDLKSSSFSAVTLHGNKTQDQ 569

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E+ + SF++G   +L+AT V   G+D+ D S++I  N         H++ GR GR  + 
Sbjct: 570 REAALQSFRDGRTNVLVATDVAARGLDIPDVSLVINFNMAGTIEVYTHRI-GRTGRAGKE 628

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTE 615
              I    P      Y    ++  ++
Sbjct: 629 GMAITFCGPEDHGVLYHLKQIMSKSQ 654


>gi|326430393|gb|EGD75963.1| vasa [Salpingoeca sp. ATCC 50818]
          Length = 873

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/388 (18%), Positives = 149/388 (38%), Gaps = 40/388 (10%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           K  +         +  ++++   F  PT  Q  A+  ++           I   + GSGK
Sbjct: 291 KPCVSFAYFGFDDVMMQLIQRQGFAQPTPIQAQAVPTVMSGRDV------IGIAETGSGK 344

Query: 307 TLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           T   +  M   +          G  AV++AP   L  Q  +  ++Y ++  I V  + G 
Sbjct: 345 TAAFVWPMIKHILDQPDLKRGDGPIAVLLAPTRELCMQISQNTRRYAKHYNIRVATVYGG 404

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLK 413
             +  + K L+        +++ T     D I+       ++  +++DE  R        
Sbjct: 405 GSRYEQVKTLKDGCE----VVVATPGRLIDLIKDKATNLRRVTYLVLDEADRM------F 454

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
               +   + ++    P  +TL+ T+     + K+  + A R P++ V+  + + +  IE
Sbjct: 455 DMGFSLQVNSIINHTRPDRQTLLFTATFKKKVEKLA-RQALRNPVRIVVGTVGKANTDIE 513

Query: 474 RLKVVLSE-GKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           +   ++ +   K  W+   + E +         N ++  E  +           +IHG +
Sbjct: 514 QRVEIMQDTASKWGWLKAHLVEMQSAGNVLVFVNKKADAETLHESMVAAGFQAVVIHGDI 573

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
             I ++ V+  FK  T ++L+AT V   G+D+     ++  +A        H++ GR GR
Sbjct: 574 DQITRQEVLSKFKKQTVRILVATDVAARGLDIPSVRNVVNFDAAMSIDTHTHRI-GRTGR 632

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKN 613
                +   L  P  +  +   +  L+ 
Sbjct: 633 AGVKGTAWTLLLPTETSFAAQLVESLEA 660


>gi|281209492|gb|EFA83660.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 880

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/366 (18%), Positives = 137/366 (37%), Gaps = 23/366 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----GGQAVIM 327
            P+  Q  AI  IL++         I     GSGKT    I +   +      G +AVI+
Sbjct: 407 QPSPIQMQAIPAILKEREV------IACAPTGSGKTAAFTIPILHTLNKPQKVGFRAVII 460

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ Y   + +++     + ++T  + Q+++ +   +       I+I T     
Sbjct: 461 SPTRELAQQIYRQFRLFSKGKPFRICVLTKGLSQSNKAEPFSKTF----DILITTPLRLV 516

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
             I+   + L  V+    F    +L   Q       ++         + L S    ++ +
Sbjct: 517 HLIKEENVNLNKVEH-LVFDEADKLFDQQFVEQVDDVVNACKNKKLKISLFSATMNNLVE 575

Query: 448 ITEKPAGRKPIKTVIIPIN----RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
              +     PIK VI   N     +D+ +  +     +      +  +  E     F   
Sbjct: 576 DMARSIMNNPIKIVIGQENSASTNVDQKLIFVGKEEGKLLAVRQLFQKGLEPPVLIFVQS 635

Query: 504 VERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
            ER   L +       ++ +IH   +   ++ +++ F+ G   +LI T ++  G+D    
Sbjct: 636 KERAQELFQELIFDNINVDVIHSDRTQFQRDKIVEKFRTGKIWVLICTELMARGMDFKGV 695

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           + +I  +      + +H++ GR GR         LY    +    +  +V++N+      
Sbjct: 696 NYVINFDFPKTVASYVHRI-GRTGRAGRTGVAYTLYTEADAPMLPSIANVIRNSGSEVPE 754

Query: 621 AEEDLK 626
               +K
Sbjct: 755 WMHTIK 760


>gi|295675110|ref|YP_003603634.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295434953|gb|ADG14123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 467

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/460 (17%), Positives = 168/460 (36%), Gaps = 60/460 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + +   T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 24  LTQLGYVEMTPIQAASLPIALGGHD------LIAQAKTGSGKTAAFSLALLARLDARKFD 77

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    I V  + G  P   +  +LE      AH+++
Sbjct: 78  TQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH----GAHVVV 133

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D ++   L+L     +++DE  R           K               +TL
Sbjct: 134 GTPGRIMDHLERGTLVLQALNTLVLDEADRMLDMGFFDDIAKVARQ------CPKERQTL 187

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   +   
Sbjct: 188 LFSATYPEGIAKLSQQFLRNP--KEVKLAERHDDSKIRQRFYEVTEDERLHAVGLLLNHY 245

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 246 RPVSTIAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATD 305

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH------------ 597
           V   G+D+     +I  +         H++ GR GR ++    + L              
Sbjct: 306 VAARGLDIAQLEAVINVDVTPDPEVHTHRI-GRTGRADQEGWALSLASMDEMGRVGGIEQ 364

Query: 598 -PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLIA 647
                   +    +   + D  L   E L+           G++LG     +G     I 
Sbjct: 365 VHKRDVEWHKLAELKAASNDPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFAGSQIG 424

Query: 648 QPELHDS--LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +  + D    + + R  A+  + +      ++G+ +++ L
Sbjct: 425 KINVTDMSTYVAVERSIAREAVRRLSA-GKLKGRKVKVRL 463


>gi|157108214|ref|XP_001650127.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|65306807|gb|AAY41941.1| vasa-like protein [Aedes aegypti]
 gi|108879362|gb|EAT43587.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 638

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 128/347 (36%), Gaps = 33/347 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q+ AI  I   M +++ M        GSGKT   L+ M   +             
Sbjct: 237 KPTPIQKYAIPII---MDKRDLM---ACAQTGSGKTAAFLLPMINTLLNDNADMVPGNPF 290

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            VI+AP   LA Q +   +K+   T + V +  G     H+   ++       HI++ T 
Sbjct: 291 VVIIAPTRELALQIFNEARKFALGTVLKVCVAYGGTATRHQMDNIQN----GCHILVATP 346

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D +      + ++  V++DE  R      +   +K        M      +TL+ +
Sbjct: 347 GRLLDFVDKQAVTFERVKFVVLDEADRMLDMGFMPSVEKMMNHET--MRPKEERQTLMFS 404

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    +I ++  +      I   +  +      +E+    +S+ +K   +   +E    +
Sbjct: 405 ATFPAEIQELAGQFLN-NYIFVAVGIVGGASTDVEQTIHQVSKFQKRKKLEELLEADDPT 463

Query: 499 ------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +   +   SL          IHG     ++E  +  FK+G   +LIAT+V  
Sbjct: 464 GTLVFVETKRNADYLASLLSETKFPTTSIHGDRLQREREEALRDFKSGKMFILIATSVAA 523

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            G+D+ + + ++  +        +H++ GR GR          Y   
Sbjct: 524 RGLDIKNVAHVVNYDLPKSIDDYVHRI-GRTGRVGNKGKATSFYDME 569


>gi|56477513|ref|YP_159102.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56313556|emb|CAI08201.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 508

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/373 (16%), Positives = 131/373 (35%), Gaps = 33/373 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   + A           
Sbjct: 27  TPTPIQAQAIPLVLAG------GDLLAAAQTGTGKTAGFTLPVLHRLSAAPAANPKAGRP 80

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           + +I+ P   LA Q  E ++ Y ++      ++ G +    + +AL++    +  I++ T
Sbjct: 81  RCLILTPTRELAAQVEESVRTYGKHLPTTSMVMFGGVGINPQIQALKK----RVDILVAT 136

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D +    L L  V+        + L +        +L +   P  R  +L S   
Sbjct: 137 PGRLLDHVGQKTLDLSGVEILILDEADRMLDMGFIRDIRKILALL--PKQRQNLLFSATF 194

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
            D  +         P    +   N   E++++    +++ +K   +   +++        
Sbjct: 195 SDEIRSLANGLLHNPGCVEVARRNTASELVQQSVYSVAQKQKRDLLVHLVKQNDWHQVLV 254

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +    +            A IHG  S   +   +  FK+G+  +L+AT +   G+D
Sbjct: 255 FTRTKHGANKLAEYLAKHGIPSAAIHGNKSQSARTRALAEFKDGSLPVLVATDIAARGLD 314

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +     ++     +     +H++ GR GR     + +        ++      ++K T D
Sbjct: 315 IDQLPHVVNFELPNVPEDYVHRI-GRTGRAGSSGAAVSFVDSEERQHLTAIERLIKRTID 373

Query: 617 -----GFLIAEED 624
                 F IA  D
Sbjct: 374 REALPAFAIAPVD 386


>gi|71421123|ref|XP_811713.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70876408|gb|EAN89862.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 622

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/420 (17%), Positives = 147/420 (35%), Gaps = 44/420 (10%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN---VEGKIAQKILRNIPFSPTKSQE 278
            P ++R   +     +   + +      +  +  +       I Q  +      PT  Q 
Sbjct: 39  KPQQQRSDAEVAQWLRENRITIYGDRVPQPMLLFSDLVAPDSIHQSFIDLGYKEPTPIQS 98

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPI 330
            A   +L      N    +     GSGKT+  ++  A  + A        G  A+++AP 
Sbjct: 99  IAWPILL------NSRDLVGVAKTGSGKTMAFMVPAALHIMAQPPVRPGDGPIALVLAPT 152

Query: 331 GILAQQHYEFIKKYTQNTQIIVE-IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  E  +K  +    I    + G  P+  + + L        H+ I T     D 
Sbjct: 153 RELAVQIEEETRKVLRRIPTIATTCLYGGAPKGPQIRTLRA----GVHVAIATPGRLIDL 208

Query: 390 IQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVLTS 439
           ++           L+L   D     G + +++    Q  +    L+ +AT       L +
Sbjct: 209 LEMRATNLLRVTYLVLDEADRMLDMGFEIQIRKICSQIRSDRQTLMFSATWPQEIRNLAA 268

Query: 440 LGDIDISKI---TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
               D  ++   +E       +   +I +   D+     +++   G++   I  + +   
Sbjct: 269 SFQRDFIRVHVGSEDLVANNDVCQHVIVVEEYDKQRRLEEILQKLGRQRVLIFVKTK--- 325

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               R+      SL      ++  IHG      ++ V+D F+     +L+AT V   G+D
Sbjct: 326 ----RTADSLHGSLRRILGGAVMAIHGDKEQSQRDYVLDRFRRDDRSVLVATDVAARGLD 381

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGE-EISSCILLYHPPLSKNSYTRLSVLKNTE 615
           + +  ++I  +        +H++ GR GR      +   +     SK     + +L+   
Sbjct: 382 IKNLDVVINFDMPTNIEDYVHRI-GRTGRAGQRGDAYSFVSGADPSKTIRDLVDLLRRAN 440


>gi|329956784|ref|ZP_08297353.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
 gi|328523823|gb|EGF50910.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
          Length = 372

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 144/378 (38%), Gaps = 39/378 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N+   I + I      SPT  Q  AI   L           +     G+GKT    I +
Sbjct: 6   LNITEPILKAIEEKGYTSPTPIQVKAIPAALTGKD------ILGCAQTGTGKTAAFAIPI 59

Query: 315 AAAVEAGG------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
              ++AG       +A+I+ P   LA Q  E I  Y + TQ+   +I G + Q  +   L
Sbjct: 60  IQHLQAGKERDKSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNML 119

Query: 369 ERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
            +       I++ T     D      I+   +   ++DE  R      +   +       
Sbjct: 120 HK----GVDILVATPGRLLDLMNQGYIRLDSVRHFVLDEADRMLDMGFIHDIK------R 169

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           LL       +TL  ++     I  +T     ++P+K  I P +   + IE+    + + +
Sbjct: 170 LLPKLPKEKQTLFFSATMPDTIIALTNS-LLKQPVKIAITPKSSTVDTIEQTVYFVEKKE 228

Query: 484 KAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           K+  +   + + +          +   +R   +          IHG  S   ++S +++F
Sbjct: 229 KSKLLISILHKAEGQSVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENF 288

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G  +++IAT +   GID+ +  ++I  +        +H++ GR GR     + +    
Sbjct: 289 KTGKIRVMIATDIAARGIDINELPLVINYDLPDVPETYVHRI-GRTGRAGNSGTALTFC- 346

Query: 598 PPLSKNSYTRLSVLKNTE 615
              S+     +S ++   
Sbjct: 347 ---SQEERKLVSDIQKLT 361


>gi|254883642|ref|ZP_05256352.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 4_3_47FAA]
 gi|294775629|ref|ZP_06741138.1| ATP-dependent RNA helicase RhlE [Bacteroides vulgatus PC510]
 gi|254836435|gb|EET16744.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 4_3_47FAA]
 gi|294450571|gb|EFG19062.1| ATP-dependent RNA helicase RhlE [Bacteroides vulgatus PC510]
          Length = 434

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 132/344 (38%), Gaps = 34/344 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQAVI 326
           +PT  QE AI  +L+          +     G+GKT    I +   +     + G +A+I
Sbjct: 23  TPTPIQEQAIPVLLKGKD------LLGCAQTGTGKTAAFAIPLIQRLYQSDHKKGIKALI 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   +Y   T +   +I G +PQ  +  AL+R       ++I T    
Sbjct: 77  LTPTRELAIQIGENFDQYAGYTGVKHAVIFGGVPQKAQVDALKR----GVQVLIATPGRL 132

Query: 387 QD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            D      I    L   ++DE  R      +   +K      +L       +TL  ++  
Sbjct: 133 LDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKK------VLKLIPARRQTLFFSATM 186

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC-----PQIEE-K 495
             +I K+ +      P K  + P++   + I +    + + +K   +      P+IE   
Sbjct: 187 PSEIEKLADS-MLTNPEKIEVTPVSSTVDTIRQSVYFVEKKEKKDLLLHLLKNPEIESVL 245

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  +   ++   +          IHG  S   ++  + +FK+ T ++LIAT +   GI
Sbjct: 246 IFTRTKHGADKLARILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDIAARGI 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV   S +I     +     +H++ GR GR       I      
Sbjct: 306 DVNQLSHVINYELPNISETYVHRI-GRTGRAGHDGIAISFCESE 348


>gi|226947893|ref|YP_002802984.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str.
           Kyoto]
 gi|226840806|gb|ACO83472.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str.
           Kyoto]
          Length = 425

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 135/358 (37%), Gaps = 38/358 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------QA 324
           T  QE +I  IL           +     G+GKT    + +   +             +A
Sbjct: 25  TPIQEKSIPYILDGKD------LVGCAQTGTGKTAAFAVPILQNLSKDKKVNKNPRTIRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  E  + Y +   +   +I G + Q  + KAL         I+I T  
Sbjct: 79  LVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKALRE----GVDILIATPG 134

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I    +   ++DE  R      +   +K      ++       + L+ ++
Sbjct: 135 RMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKK------IISKLPRGRQNLLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
               +I+K+ +    + PI+  + P++   + I +    + + +K   +   ++++    
Sbjct: 189 TMPSEITKLVDS-IVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRSLLKHLLKDESIES 247

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +     N + +    +      IHG  S   ++  +++FK G  ++L+AT +   
Sbjct: 248 ALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVATDIAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           GIDV + S +   N        +H++ GR GR       I       +K+      ++
Sbjct: 308 GIDVNELSHVFNYNLPDVPETYVHRI-GRTGRAGAKGVAISFCDIEETKSLKAIEKLI 364


>gi|147672130|ref|YP_001215089.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395]
 gi|146314513|gb|ABQ19053.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
 gi|227015635|gb|ACP11844.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
          Length = 428

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 144/366 (39%), Gaps = 35/366 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 44  EPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 97

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  E + +      +    + G + +  ++ AL        +I++ T     D 
Sbjct: 98  TRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALAE----NPNILVATTGRLFDL 153

Query: 389 ---SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               ++  ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 154 TQSGLRLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTAGVRQTVMCSATFSDD 206

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 207 LKLKTQQLMRVPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 266

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S  ++E+ +  FKNG+ ++LIAT ++  GI +  
Sbjct: 267 AKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATDLLARGIHIEQ 326

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPLS----KNSYTRLSVLKNT 614
             ++I           +H++ GR  R  +    + L+ H  +       + T+  +    
Sbjct: 327 LPVVINFELPMHAETYVHRV-GRTARAGQQGIALSLVCHGEMDALNAIRTLTQRQLPVQN 385

Query: 615 EDGFLI 620
            DGF +
Sbjct: 386 LDGFPV 391


>gi|5669638|gb|AAD46404.1|AF096248_1 ethylene-responsive RNA helicase [Solanum lycopersicum]
          Length = 474

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 134/357 (37%), Gaps = 54/357 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L+          I   + GSGKT+  L+     V A        G  
Sbjct: 118 EPTPIQAQGWPMALKGRD------LIGIAETGSGKTIAYLLPAIVHVNAQPILDHGDGPI 171

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +   K+  +++I    I G +P+  + + L++       I+I T 
Sbjct: 172 VLVLAPTRELAVQIQQEATKFGASSRIKNTCIYGGVPKGPQVRDLQK----GVEIVIATP 227

Query: 384 ALFQDSIQ-------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
               D ++          ++L   D     G + ++             ++ TP  +TL 
Sbjct: 228 GRLIDMLESNHTNLRRVTIVLDEADRMLDMGFEPQI----------RKCISDTPDRQTLY 277

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +++ ++     R   +     +  ++++++  ++++                 
Sbjct: 278 WSATWPKNVNHVSSACGNRLGDQKYNKLVKLLEDIMDGSRILIFR--------------- 322

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   +    L      +++I HG  S  +++ V+  FK G   ++ AT V   G+D
Sbjct: 323 --TLKGCDQVTRQLRMDGWPALSI-HGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLD 379

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           V D   +I  +        +H++ GR GR     +    +    ++ +   +++L+ 
Sbjct: 380 VKDVKFVINYDFPGSLEDYVHRI-GRTGRAGASGTAYTFFTAANARFAKDLVNILEE 435


>gi|317507153|ref|ZP_07964911.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
 gi|316254555|gb|EFV13867.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
          Length = 530

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 130/345 (37%), Gaps = 39/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q   I  +L           +     G+GKT    + + + ++      QA+++A
Sbjct: 31  TPSPIQAQTIPALLDGRDV------VGLAATGTGKTAAFALPVLSRIDPKLRRPQALVLA 84

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y  +  Q+ V  I G      + +AL R     A +++GT     
Sbjct: 85  PTRELALQVSEAFSRYASKMPQVSVVCIYGGGAYPVQLQALGR----GAQVVVGTPGRVV 140

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++   L        +L   DE  + G Q+ +           +L  A    +  + ++
Sbjct: 141 DHLERGTLKLGELRFLVLDEADEMLKMGFQEDV---------ERVLGAAAEEKQVALFSA 191

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I KI++      P++  +       E IE+   +++  +K   +   +E +  S 
Sbjct: 192 TMPGAIRKISKTYL-HNPVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRILEVEPFSA 250

Query: 500 F------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   E           +   ++G +    +E  + + + G   +L+AT V   
Sbjct: 251 MIVFVRTKQATEELAERLRARGFAARPLNGDIPQAARERTVSALREGKIDILVATDVAAR 310

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+DV   + +   +A H   + +H++ GR GR        L   P
Sbjct: 311 GLDVERITHVFNYDAPHDTESYVHRI-GRTGRAGRTGVSYLFVTP 354


>gi|269956525|ref|YP_003326314.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305206|gb|ACZ30756.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 712

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/405 (17%), Positives = 147/405 (36%), Gaps = 31/405 (7%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F+ P+  Q  AI  +L                 G+GKT    + + A+VEA     
Sbjct: 65  ADLGFTTPSAIQAQAIPALLGGRDITGV------AQTGTGKTAAFGLPLLASVEAHRGTR 118

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHI 378
              QA+++ P   LA Q  E I+ +  +   + V  + G  P   +++AL        H+
Sbjct: 119 PTVQALVLTPTRELAMQVAEAIESFASHLPDVRVLSVYGGSPYVPQQRALRD----GVHV 174

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           ++GT     D ++   L+L   D +     +    L          + +  P  R + L 
Sbjct: 175 VVGTPGRVIDHLERGGLVLD--DARFLVLDEADEMLRMGFAEDVEKIFSYAPTQRQVALF 232

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S       +         P++  +   +     + +   ++    K   +   +      
Sbjct: 233 SATMPPAIRAIADTHLNDPVEIAVARQSSTVASVHQGYAIVPFRHKVGALTRILATSDAD 292

Query: 499 ------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   RS  E   +       S A I G ++  ++E +++  ++G   +L+AT V  
Sbjct: 293 ASIVFTRTRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLRSGALDVLVATDVAA 352

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV    +++  +      A +H++ GR GR       +    P          + +K
Sbjct: 353 RGLDVDRIGLVVNFDIPREAEAYVHRI-GRTGRAGRTGRAVSFVTPHERGKLKFIENTIK 411

Query: 613 NTEDGFLI-AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            + +   I +  D+   +   +L    S   +    + +L+  L+
Sbjct: 412 VSLEEIDIPSPRDVSAHRAARLL---DSAPARTQAGRLDLYKQLV 453


>gi|159901480|ref|YP_001547727.1| DEAD/DEAH box helicase domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894519|gb|ABX07599.1| DEAD/DEAH box helicase domain protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 584

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 162/441 (36%), Gaps = 65/441 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            PT  Q  +I  +L           I Q   G+GKT    +     ++    G QA+I+ 
Sbjct: 24  EPTPIQAQSIGLMLSG------NDIIAQAQTGTGKTAAFSLPTIERIDPKAMGVQALILT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I  Y +   I    + G  P   + +AL+R      +I+IGT     D
Sbjct: 78  PTRELAVQVSDAISAYGKYLNIRALPVYGGQPIDRQLRALKR----GVNIVIGTPGRLMD 133

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            ++   L L  V        DE    G    ++           L  A    +T + ++ 
Sbjct: 134 HMERGTLDLSTVRTVVLDEADEMLNMGFVDDIEYI---------LERAPKDRQTALYSAT 184

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
              +I+++  K      + T+      + ++ +    + +     + +  +I + +    
Sbjct: 185 MPDEIARLARKYLRSPQMVTIEREQLTVPQIRQVYYEIGAR--DKFEVLTRILDLEMPTS 242

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F       + L E   +      ++HG +S   ++ VM  F+    ++L+AT V   
Sbjct: 243 AIIFCRTKAMVDELGEKLLARGYGAELLHGDLSQAMRDRVMKRFREEQVEILVATDVAAR 302

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   S +I  +      A +H++ GR GR       + L  P        +L  ++ 
Sbjct: 303 GLDIEHVSHVINYDIPLDPEAYVHRI-GRTGRAGRSGVAVTLVTPRE----RRQLRTIER 357

Query: 614 TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH------DSLLEIARKDAKH-- 665
              G  I  + L+     +++  ++      L    E H      +  L +A + A+   
Sbjct: 358 MT-GAPI--QRLRLPTIADVVARRREAFKDNLRELIEQHNEQGGLEQYLVLAEELAEQYS 414

Query: 666 ----------ILTQDPDLTSV 676
                     ++  +PDLT+ 
Sbjct: 415 PTDLAAAAFKMMLGEPDLTAE 435


>gi|13399860|pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
           Hyperthermophile Methanococcus Jannaschii
 gi|13399861|pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
           Hyperthermophile Methanococcus Jannaschii
          Length = 367

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 128/343 (37%), Gaps = 44/343 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAP 329
            PT  Q   I   L D         + Q   GSGKT    I +   V    G +A+I+ P
Sbjct: 28  KPTDIQXKVIPLFLNDEYN-----IVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I+    N  + +  I G      + KAL+      A+I++GT     D 
Sbjct: 83  TRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDH 137

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLTS 439
           I    L L  V        DE    G  + +   L        +LL +AT     L L  
Sbjct: 138 INRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKDKRILLFSATXPREILNLAK 197

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               D S I  K                I+  IE+  V ++E ++   +C  ++ K+   
Sbjct: 198 KYXGDYSFIKAK----------------INANIEQSYVEVNENERFEALCRLLKNKEFYG 241

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +   +   S           IHG +S   +E V+  FK    ++LIAT V   G
Sbjct: 242 LVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVXSRG 301

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           IDV D + +I  +      +  H++ GR GR  +    I + +
Sbjct: 302 IDVNDLNCVINYHLPQNPESYXHRI-GRTGRAGKKGKAISIIN 343


>gi|119357571|ref|YP_912215.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354920|gb|ABL65791.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeobacteroides DSM
           266]
          Length = 589

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 137/376 (36%), Gaps = 46/376 (12%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +   K L  + +  PT  Q   I  +L+          + Q   G+GKT    + + + +
Sbjct: 18  EPLMKALEEVGYENPTPIQAQTIPLLLEGRD------LLGQAQTGTGKTAAFALPILSNI 71

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHG 374
                  QA+++AP   LA Q  E   +Y +      V  I G      + + L++    
Sbjct: 72  TIARREPQALVLAPTRELAIQVAEAFHRYAEYLKGFHVLPIYGGQDYGIQLRMLKQ---- 127

Query: 375 QAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             H+++GT     D ++   L        +L   DE  R G    ++            +
Sbjct: 128 GVHVVVGTPGRVMDHMRRGSLNLDGLQCLVLDEADEMLRMGFIDDVEWI----------L 177

Query: 427 TATPIPRTLVL-TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
             TP  R + L ++   + I +I +K        T+      ++ + +  +  +  G   
Sbjct: 178 DQTPKGRQVALFSATLPVPIRRIAQKYLNNPAEITIQNKTTTVEAIRQ--RYWIVGGSHK 235

Query: 486 YWICPQIEEKKESN--------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
             +  +I E +  +            +E    L      + + ++G M+   +E  ++  
Sbjct: 236 LDVLTRILEVEPFDGILIFVRTKTMTLELAEKLQARGYDA-SALNGDMAQNMRERTVEQL 294

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+G   ++IAT V   G+DV   S +I  +      + +H++ GR GR       IL   
Sbjct: 295 KSGALNIVIATDVAARGLDVDRISHVINYDIPSDTESYVHRI-GRTGRAGRSGEAILFVS 353

Query: 598 PPLSKNSYTRLSVLKN 613
           P      Y      + 
Sbjct: 354 PREKNMLYAIEKATRK 369


>gi|328958182|ref|YP_004375568.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4]
 gi|328674506|gb|AEB30552.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4]
          Length = 488

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 137/362 (37%), Gaps = 37/362 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             +  +I   +     F PTK QE  I   L+          I++   GSGKT+   + +
Sbjct: 15  FAISDEIIAALTSLRYFHPTKVQEEVIPLALEGKDV------IVESQTGSGKTVSYGVPL 68

Query: 315 AAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
              V   E   Q +++ P   LA Q  E +    +  ++    + G      ++  L++ 
Sbjct: 69  CEKVDWEENKPQVLVLVPTRELAIQVKEDLMNVGRLKRVKATAVYGKASFDTQKSELKQ- 127

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHV 423
              ++HI++GT     D +Q           L+L   DE    G   ++           
Sbjct: 128 ---KSHIVVGTPGRVLDHLQKGTFKIEKIECLVLDEADEMLNMGFADQV---------EA 175

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           ++       +TL+ ++    +I +I            VI         I +  V + E K
Sbjct: 176 IINFLPAERQTLLFSATMPKEIERIASFYMKPDKQSIVIETTELSKPKIIQSSVKVQEDK 235

Query: 484 KAYWICPQI---EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
           K   +   +          F +  E  N+L+     +   I  IHG M   D+ SVMD F
Sbjct: 236 KEQQLLDLLTVENADSCMIFCNTQEAVNNLYTFLNKAGLPIDKIHGGMVQEDRFSVMDDF 295

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + G  + L+AT V   GID+ + + ++  +      + +H+  GR GR  +    + L  
Sbjct: 296 RQGRFRYLVATDVAARGIDIENVTHVVNFDVPVEKESFVHR-TGRTGRAGKTGMALTLVT 354

Query: 598 PP 599
           P 
Sbjct: 355 PK 356


>gi|327538177|gb|EGF24861.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
           baltica WH47]
          Length = 449

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 130/370 (35%), Gaps = 40/370 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-----GGQAVI 326
           +P+  Q + I   L           I Q   G+GKT    I +   +++       QA++
Sbjct: 63  TPSPIQAALIPHALNGKDV------IGQARTGTGKTAAFSIPILEQLDSLEDCRDPQAIV 116

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q     ++        + +++G      + + LE        +++GT    
Sbjct: 117 IVPTRELADQVAAEAERLASGVPTEIAVLSGGKNMNRQLRQLEN----GTQLVVGTPGRV 172

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            D +Q   L    V     DE  R                  ++       +TL+L++  
Sbjct: 173 HDHLQRGTLRTNNVWCVVLDEADRM------LDIGFRPQIERIMRKCPRNRQTLLLSATL 226

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
              + ++ E     +P+           + IE+    +++  K   +   ++ +K     
Sbjct: 227 PPVVRRLAESYM-HEPVVIDCCRDEMAVDTIEQRYFTIAQDDKVRLLESLLKREKPEQAI 285

Query: 497 --ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R        L   + S+   IHG +   +++ V+   ++G  K L+AT V+  G
Sbjct: 286 IFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKFLVATDVVGRG 345

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL-----SKNSYTRLS 609
           ID+   S I+  +        +H++ GR GR            P       S        
Sbjct: 346 IDISTISHIVNFDVPQDCDDYVHRV-GRTGRMGRDGVAYTFVVPGEGDILTSIEQRINKL 404

Query: 610 VLKNTEDGFL 619
           ++++  DGF 
Sbjct: 405 LIRDKMDGFE 414


>gi|254236843|ref|ZP_04930166.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
 gi|126168774|gb|EAZ54285.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
          Length = 449

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 126/344 (36%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQ------- 323
           +PT  Q  AI   L+          +     G+GKT    + +   +   G Q       
Sbjct: 23  TPTPIQAQAIPPALKGRD------LLAAAQTGTGKTAGFALPLLQRLTLEGPQVAANSVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA+Q +  ++ Y Q+  +   +  G +    +   L +       I++ T 
Sbjct: 77  ALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRK----GVDILVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++++ +L  +++DE  R        L          L  A P  R  +L 
Sbjct: 133 GRLLDLYRQNAVKFAQLQALVLDEADRM-------LDLGFARELDELFAALPRKRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +   +   R P+   + P N   + + +  V + + +K    C  ++  +  
Sbjct: 186 SATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKVELFCHLLQANRWR 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R  VE    L +    +   IHG      +   +  FK G   L++AT V  
Sbjct: 246 QALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLMVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            G+D+ +  +++  +        +H++ GR GR       + L 
Sbjct: 306 RGLDIEEMPLVVNFDLPIVAEDYVHRI-GRTGRAGASGQAVSLV 348


>gi|116495993|ref|YP_807727.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
 gi|191639473|ref|YP_001988639.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
 gi|227533029|ref|ZP_03963078.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239630391|ref|ZP_04673422.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|116106143|gb|ABJ71285.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
 gi|190713775|emb|CAQ67781.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
 gi|227189430|gb|EEI69497.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526674|gb|EEQ65675.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|327383567|gb|AEA55043.1| DEAD box helicase family protein [Lactobacillus casei LC2W]
 gi|327386759|gb|AEA58233.1| DEAD box helicase family protein [Lactobacillus casei BD-II]
          Length = 502

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 124/348 (35%), Gaps = 39/348 (11%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAV 325
            F   T  Q   I  +L           I Q   G+GKT    + +   ++      QA+
Sbjct: 20  GFEEATPIQAETIPLVLAGKDV------IGQAQTGTGKTAAFGLPILQNIDKADRSIQAL 73

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +++P   LA Q  E + +  Q+ +I V+ + G      + + L         I++GT   
Sbjct: 74  VISPTRELAIQTQEELYRLGQDKKIKVQAVYGGADIRRQIRQLSE----HPQIVVGTPGR 129

Query: 386 FQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D I            L+L   DE    G    ++           +       +TL+ 
Sbjct: 130 ILDHIGRHTLKLQNLKVLVLDEADEMLDMGFIDDIEKI---------VEQMPTARQTLLF 180

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++     I ++T K    +P+   I       + +E+  V   + +K   +    + +  
Sbjct: 181 SATIPASIMRLTNKFM-HEPVTVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDP 239

Query: 497 --ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F     R + L     +       IHG ++   + SV+  FK+G    L+AT V 
Sbjct: 240 DLALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVA 299

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+   + +   +      + +H++ GR GR       +    P 
Sbjct: 300 ARGLDISGVTHVYNYDIPQDPDSYVHRI-GRTGRAGHKGVSVTFVTPN 346


>gi|125775187|ref|XP_001358845.1| GA20384 [Drosophila pseudoobscura pseudoobscura]
 gi|195144826|ref|XP_002013397.1| GL23429 [Drosophila persimilis]
 gi|54638586|gb|EAL27988.1| GA20384 [Drosophila pseudoobscura pseudoobscura]
 gi|194102340|gb|EDW24383.1| GL23429 [Drosophila persimilis]
          Length = 399

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 142/387 (36%), Gaps = 33/387 (8%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            +N++ ++ + I       P+  Q+ +IK I++          I Q   G+GKT    I+
Sbjct: 30  AMNLKEELLRGIYAYGFEKPSAIQQRSIKPIVKGRDV------IAQAQSGTGKTATFSIS 83

Query: 314 MAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           +  +++      Q + ++P   LA Q  + I        ++  +  G        + L+ 
Sbjct: 84  ILQSLDTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVLCHVCIGGTNLGEDIRKLDY 143

Query: 371 IAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKL--TQKATA 420
                 HI+ GT     D I+           L+L   DE    G ++++         A
Sbjct: 144 GQ----HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 199

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVV 478
             V+L++AT     L +TS    D  +I  K      + IK   + + R +   + L   
Sbjct: 200 TQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL--- 256

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
                  Y      +     N +  V+           +++ +HG M   +++ +M  F+
Sbjct: 257 ----CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 312

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++LI T V   GIDV   S++I  +  +     +H++ GR GR       I     
Sbjct: 313 AGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKS 371

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDL 625
              +             D   +   DL
Sbjct: 372 DDIRILRDIEQYYSTQIDEMPMNVADL 398


>gi|237793963|ref|YP_002861515.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str.
           657]
 gi|229261675|gb|ACQ52708.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str.
           657]
          Length = 425

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 135/358 (37%), Gaps = 38/358 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------QA 324
           T  QE +I  IL           +     G+GKT    + +   +             +A
Sbjct: 25  TPIQEKSIPYILDGKD------LVGCAQTGTGKTAAFAVPVLQNLSKDKKANKNPRPIRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  E  + Y +   +   +I G + Q  + K L         I+I T  
Sbjct: 79  LVLAPTRELAIQIAESFECYGKYINLKSVVIFGGVSQNPQTKVLRE----GVDILIATPG 134

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I    +   ++DE  R      +   +K      ++     I + L+ ++
Sbjct: 135 RMLDLFNQKYIDLRNIEFFVLDEADRMLDMGMIHDVKK------IISKLPKIRQNLLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
               +I+K+ +    + PI+  + P++   + I +    + + +K   +   +++K    
Sbjct: 189 TMPSEITKLVDS-IVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLLKDKSIES 247

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +     N + +    +      IHG  S   ++  +++FK G  ++L+AT +   
Sbjct: 248 ALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVATDIAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           GIDV + S +   N        +H++ GR GR       I       +K+      ++
Sbjct: 308 GIDVNELSHVFNYNLPDVPETYVHRI-GRTGRAGAKGVAISFCDIEETKSLKAIEKLI 364


>gi|32352202|dbj|BAC78594.1| RNA helicase [Oryza sativa Japonica Group]
          Length = 408

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 138/366 (37%), Gaps = 42/366 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----------G 322
           P+  Q  A   +L           I     GSGKT+   +     V              
Sbjct: 11  PSPIQAYAWPYLLDGRD------FIGIAATGSGKTIAFGVPALMHVRRKMGEKSAKKGVP 64

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           + ++++P   LAQQ  + + +      I    + G   +  +  AL+        I+IGT
Sbjct: 65  RVLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQISALKS----GVDIVIGT 120

Query: 383 HALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
               +D I+     L  V     DE  R      L +  +     +L  TA+ + +T++ 
Sbjct: 121 PGRMKDLIEMGICRLNDVSFVVLDEADRM-----LDMGFEPEVRAILSQTAS-VRQTVMF 174

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWICPQIEEK 495
           ++     + ++ ++     PIK VI   +     +V++ ++V+    + +  +    +  
Sbjct: 175 SATWPPAVHQLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLVALLDKYH 234

Query: 496 KESNFR--------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           K    R            R  ++ +    S   +HG  +  D+   +  FK G+C L+IA
Sbjct: 235 KAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGSCPLMIA 294

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+ D  ++I  +        +H++ GR GR  +       +       +   
Sbjct: 295 TDVASRGLDIPDVEVVINYSYPLTTEDYVHRI-GRTGRAGKKGVAHTFFTQENKGLAGEL 353

Query: 608 LSVLKN 613
           ++VL+ 
Sbjct: 354 VNVLRE 359


>gi|317495876|ref|ZP_07954239.1| DEAD/DEAH box helicase [Gemella moribillum M424]
 gi|316914053|gb|EFV35536.1| DEAD/DEAH box helicase [Gemella moribillum M424]
          Length = 485

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 135/344 (39%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
           SPT  Q   I  +L  +        + Q   GSGKT    I +   V      Q++I+AP
Sbjct: 24  SPTGIQTETIPYVLSGID------ILAQAQTGSGKTGAFGIPIVDTVRKTEELQSLILAP 77

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ  E ++  ++   + V II G      + + L++    +  II+GT     D 
Sbjct: 78  TRELAQQVGEQLRLMSRVKGLKVSIIFGGTSIERQIQDLKK----RPQIIVGTPGRVIDH 133

Query: 390 IQYY--------KLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           I            L+L   DE    G  +  R  L++  +    LL +AT +P+T++  S
Sbjct: 134 INRKTIRLETLTHLVLDEADEMLNMGFIEDVRFILSKITSRHQTLLFSAT-MPKTIMELS 192

Query: 440 LGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
              +   K+  T       P  T    I R +E +E L   L        I         
Sbjct: 193 KDFMKDYKLVKTMSDEDLNPDITEFATIARENEKLETLIGFLDVQNPNLAIV-------- 244

Query: 498 SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F     R + L     +       +HG ++   +  ++  FKN + ++L+AT V   G
Sbjct: 245 --FGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQILVATDVAARG 302

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ID+ D + +   +      +  H++ GR GR  +    +   +P
Sbjct: 303 IDISDVTHVYNFDIPQDTESYTHRI-GRTGRAGKSGVAVTFLNP 345


>gi|302205951|gb|ADL10293.1| DEAD-box helicase [Corynebacterium pseudotuberculosis C231]
          Length = 650

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/370 (20%), Positives = 143/370 (38%), Gaps = 40/370 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +P+  Q   I  +++     + ++ + Q   G+GKT    + + + +   +   QA+I+A
Sbjct: 88  TPSPIQAQTIPVLMEG----HDVMGLAQ--TGTGKTAAFALPILSRINVKKRHPQALILA 141

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  + +  +   I  + I G      +   L R     A II+GT     
Sbjct: 142 PTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRR----GAQIIVGTPGRVI 197

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRTL 435
           D ++   L        +L   DE    G Q+ +   L        V L +AT     R L
Sbjct: 198 DHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPADKQVALFSATMPNGIRRL 257

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               + D    ++  +      I    + +   +++    +++     +A  +  + + +
Sbjct: 258 SKQYMKDPREIQVKSETRTNTNITQRFLNVAHRNKLDALTRILEVTEFEAMIMFVRTKHE 317

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E       E    L     S+ AI +G ++   +E  +D  K+G   +L+AT V   G+
Sbjct: 318 TE-------EVAEKLRARGFSAAAI-NGDIAQAQRERTVDQLKDGRLDILVATDVAARGL 369

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   + +   +  +   + +H++ GR GR       IL   P   +      S+ + T 
Sbjct: 370 DVERITHVFNYDIPNDTESYVHRI-GRTGRAGRSGEAILFVTP---RERRMLRSIERATN 425

Query: 616 DGFLIAEEDL 625
               + E DL
Sbjct: 426 A--ELIEMDL 433


>gi|300858229|ref|YP_003783212.1| hypothetical protein cpfrc_00811 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685683|gb|ADK28605.1| hypothetical protein cpfrc_00811 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330505|gb|ADL20699.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 1002]
 gi|308276186|gb|ADO26085.1| DEAD-box helicase [Corynebacterium pseudotuberculosis I19]
          Length = 660

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/370 (20%), Positives = 143/370 (38%), Gaps = 40/370 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +P+  Q   I  +++     + ++ + Q   G+GKT    + + + +   +   QA+I+A
Sbjct: 88  TPSPIQAQTIPVLMEG----HDVMGLAQ--TGTGKTAAFALPILSRINVKKRHPQALILA 141

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  + +  +   I  + I G      +   L R     A II+GT     
Sbjct: 142 PTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRR----GAQIIVGTPGRVI 197

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRTL 435
           D ++   L        +L   DE    G Q+ +   L        V L +AT     R L
Sbjct: 198 DHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPADKQVALFSATMPNGIRRL 257

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               + D    ++  +      I    + +   +++    +++     +A  +  + + +
Sbjct: 258 SKQYMKDPREIQVKSETRTNTNITQRFLNVAHRNKLDALTRILEVTEFEAMIMFVRTKHE 317

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E       E    L     S+ AI +G ++   +E  +D  K+G   +L+AT V   G+
Sbjct: 318 TE-------EVAEKLRARGFSAAAI-NGDIAQAQRERTVDQLKDGRLDILVATDVAARGL 369

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   + +   +  +   + +H++ GR GR       IL   P   +      S+ + T 
Sbjct: 370 DVERITHVFNYDIPNDTESYVHRI-GRTGRAGRSGEAILFVTP---RERRMLRSIERATN 425

Query: 616 DGFLIAEEDL 625
               + E DL
Sbjct: 426 A--ELIEMDL 433


>gi|78224236|ref|YP_385983.1| DEAD/DEAH box helicase-like [Geobacter metallireducens GS-15]
 gi|78195491|gb|ABB33258.1| DEAD/DEAH box helicase-like protein [Geobacter metallireducens
           GS-15]
          Length = 452

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 128/372 (34%), Gaps = 27/372 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
            PT  Q  AI   L+          +     G+GKT   ++     +         G + 
Sbjct: 23  DPTPIQAQAIPRALEGRD------LLATAQTGTGKTAAFVLPALQRLARPAQKPGRGPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LAQQ  + ++ Y +  +I    I G MP   + + L         +I+ T  
Sbjct: 77  LVLTPTRELAQQVTDAVRSYGKFLRIRSGAILGGMPYREQLRLLSAP----VDLIVATPG 132

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D +    L L  + E        R+     +     +   +    +TL+ T+  D  
Sbjct: 133 RLVDLLDRRSLDLSRL-ELLILDEADRMLDMGFSDDVDRVAAASPSDRQTLLFTATMDAT 191

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNFR 501
           ++++  +         V       + + +RL V      K   +   I +   +K   F 
Sbjct: 192 MARLAGRLLNEPERIEVAGTKTTHEHIEQRLHVADDLSHKNRLLQHLITDGDVRKAIIFS 251

Query: 502 SVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           +      ++     S   S A +HG M    +   + + K G  +LL+AT V   G+DV 
Sbjct: 252 ATKRDAENMAIELRSQGHSAAALHGDMPQSARNRTIAAMKQGRIRLLVATDVAARGLDVS 311

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             S +I  +   F    +H++ GR GR       I                 +  T    
Sbjct: 312 GISHVINFDLPKFAEDYVHRI-GRTGRAGASGIAISFASLNEVSYLARIERYIGQTLPEH 370

Query: 619 LIAEEDLKQRKE 630
            I    L+ R+ 
Sbjct: 371 QIPG--LEPRRP 380


>gi|78355199|ref|YP_386648.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217604|gb|ABB36953.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 572

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 131/349 (37%), Gaps = 36/349 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           ++++ F   +  Q  +I  IL           + Q   G+GKT    I +   ++     
Sbjct: 64  IQDMGFEEASPIQTMSIPHILAGKDV------VGQAQTGTGKTAAFGIPILERIDPRDKA 117

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QAV++ P   LA Q  E +    ++   I V  + G  P   + +AL R     A +I+
Sbjct: 118 TQAVVLCPTRELAIQVAEEVTTLARHKRGISVVPVYGGQPIERQVRALRR----GAQVIV 173

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATP 430
           GT     D +            ++L   DE    G +  ++    +       +  +AT 
Sbjct: 174 GTPGRVMDHLDRGTMDINTVKMVVLDEADEMLDMGFRDDIEFILGKMEQEVQTVFFSATM 233

Query: 431 IPRTLVLT--SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               L +    L + +  K+T+K      I+ +   +    ++    +V+     K   +
Sbjct: 234 PRAILDMAQRYLKEPEFLKVTQKLLTVPSIEQIYFEVRPFQKLESLCRVLDVYNPKLTIV 293

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     + +  V+   +  +        +HG ++   ++ VM+ F+ G   +L+AT
Sbjct: 294 F--------CSTKVGVDELATNLQARGYDADGLHGNLNQAQRDRVMNRFRKGNIDILVAT 345

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            V   GIDV +   ++  +  +   + +H++ GR GR            
Sbjct: 346 DVAARGIDVENVEAVVNYDIPNDVESYVHRI-GRTGRAGRAGRAFTFVS 393


>gi|323358213|ref|YP_004224609.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323274584|dbj|BAJ74729.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 585

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 134/346 (38%), Gaps = 41/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q + I  +LQ          +     G+GKT    + + + +E G    QA+++A
Sbjct: 41  TPSAIQAATIPVLLQGRDV------VGLAQTGTGKTAAFALPVLSQMETGHKNPQALVLA 94

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY  +   + V  + G      +  AL R       +I+GT     
Sbjct: 95  PTRELALQVCEAFEKYAAHIKGVSVLPVYGGQGYGQQLSALRR----GVDVIVGTPGRIM 150

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVL 437
           D +        +   L+L   DE  + G  + +   L    +   V L +AT   +   +
Sbjct: 151 DHLDKGTLDLSELKFLVLDEADEMLKMGFAEDVETILADTPSTKQVALFSATMPAQIRRI 210

Query: 438 TSLGDIDISKITEK-----PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           ++    D  +IT K      A       ++    +ID +   L+V   EG   +      
Sbjct: 211 SAQYLNDPEEITVKTKTTTSANITQRYLIVSYQQKIDALTRILEVENFEGMIVF------ 264

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  ++  E           + A I+G ++ + +E  ++  K+G   +L+AT V  
Sbjct: 265 -----TRTKNETETVAEKLRARGYTAAAINGDIAQVQRERTVNQLKSGKLDILVATDVAA 319

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G+DV   S ++  +      + +H++ GR GR       I    P
Sbjct: 320 RGLDVERISHVVNYDLPIDTESYVHRI-GRTGRAGRTGDAISFVTP 364


>gi|316968374|gb|EFV52655.1| eukaryotic initiation factor 4A-III [Trichinella spiralis]
          Length = 970

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 131/346 (37%), Gaps = 30/346 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ AI+ I+           I Q   G+GKT    I +   ++      QA+++A
Sbjct: 62  KPSMIQKRAIRPIVSGRDV------IAQSQSGTGKTATFSIGLLQVIDTQLRETQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + +        +      G        + L+       H+++GT     D
Sbjct: 116 PTRELAQQIQKVVLALGDRMNVQAHACIGGTNVGEDIRKLDYGQ----HVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I    L        ++   DE    G +    +       + +     P  + +V+++ 
Sbjct: 172 MITRQNLRTDSLKVFVMDEADEMLTKGNELLYLILGFKDQIYDIYRFLPPGIQVVVISAT 231

Query: 441 GDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
              +I ++T K    +P++ ++      ++ + +    V  E  K   +C   +      
Sbjct: 232 LPHEILEMTGKFMT-EPVRILVKRDELTLEGIRQYFVHVEREDWKFETLCDLYDSITISQ 290

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  VE  +   +    ++  IHG M   D+  V+  F++G  ++LI+T V   
Sbjct: 291 AVVFCNTRHKVEWLDEKMKESNFTVGAIHGEMDQKDRNEVVRKFRDGIYRVLISTDVWSR 350

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+   S++I  +      A LH++ GR GR       I      
Sbjct: 351 GLDIPGVSLVINYDVPTNREAYLHRI-GRSGRYGRKGCAINFATTE 395


>gi|315606927|ref|ZP_07881933.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574]
 gi|315251308|gb|EFU31291.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574]
          Length = 375

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/358 (19%), Positives = 136/358 (37%), Gaps = 37/358 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q+ AI   L+          +     G+GKT    I +   +            +
Sbjct: 23  TPTPIQQKAIPIGLEGRD------LLGIAQTGTGKTAAFAIPIIQQLAKSADDNRRRDIK 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  E  K Y++ T++   +I G + Q  + K LER       I+I T 
Sbjct: 77  ALILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKELER----GVDILIATP 132

Query: 384 ALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D I  + + L  +     DE  R      +   +K      L+       +TL+ +
Sbjct: 133 GRLLDLISQHIITLEHIRHFVLDEADRMLDMGFIHDIKK------LIPLLPKRRQTLLFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I+K++ K    KP +  + P++ + + IE+    + + +K   +   ++     
Sbjct: 187 ATMPETIAKLS-KSLLYKPARVEVAPVSSVVDTIEQRLYFVEKPQKTDLLVSVLKNDGNR 245

Query: 499 ------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +   +R     +        IHG  S   ++  + +FK+G  ++++AT +  
Sbjct: 246 SALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRVIVATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
            GID+ +  ++I  +        +H++ GR GR       +                +
Sbjct: 306 RGIDIANLQMVINYDLPDVAETYVHRI-GRTGRAGNSGVALTFCTQEERPMVRDIQKL 362


>gi|119946353|ref|YP_944033.1| ATP-dependent RNA helicase DbpA [Psychromonas ingrahamii 37]
 gi|119864957|gb|ABM04434.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 462

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 160/447 (35%), Gaps = 52/447 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q  ++  +L           I QG  GSGKT    + +   +       Q++I+ P 
Sbjct: 28  TPIQAQSLPHVLAGKDV------IAQGKTGSGKTAAFGLGLLEKLSVKRFRIQSLILCPT 81

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + +++  +    I V  + G +P   +  +LE      AHII+GT    +D 
Sbjct: 82  RELADQVGKELRRLARTIHNIKVLTLCGGVPFGPQIGSLEH----GAHIIVGTPGRIEDH 137

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++   L L  + E        R+       +   ++  A    +TL+ ++     I+ I 
Sbjct: 138 LRKGTLRLDDL-EVLVLDEADRMLDMGFQASIDAIIDQAPKKRQTLLFSATFPEKINNIA 196

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-------SNFRS 502
           ++         V       D VI +    +   +        + +K +        N + 
Sbjct: 197 KRIMTDP--IMVKAESKHDDSVIAQHFYKVENSQDRMIALRLLLQKYQPESSVVFCNTKK 254

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            V+       +   S   +HG +   D++  +  F N +  +L+AT V   G+D+ + S 
Sbjct: 255 EVQEVADELANRGFSALALHGDLEQKDRDQALIRFANKSASILVATDVAARGLDIDNLSA 314

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
           +   +  H     +H++ GR GR          Y              L  +     +  
Sbjct: 315 VFNYHIAHDQELHVHRI-GRTGRAGNKGLAFSFYSDKEHHKVSVLEDYLDRSISPEQLPL 373

Query: 623 EDL---------------------KQRKEGEILG--IKQSGMPKFLIAQPELHD--SLLE 657
            +L                     K R  G+I+G    ++G+    + +  + D  S + 
Sbjct: 374 LNLLDKEPQQSNMITIRIDGGKRQKIR-PGDIVGALTGENGISGDQVGKIHVSDNWSYIA 432

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRIL 684
           + R   K    +  +   ++G++ R++
Sbjct: 433 VQRDVIKVAFKKLSE-GKLKGRTFRVM 458


>gi|134300131|ref|YP_001113627.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134052831|gb|ABO50802.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 482

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 93/452 (20%), Positives = 163/452 (36%), Gaps = 62/452 (13%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM---AAAVEAG 321
           ++ + F   T  QE AI   L           I Q   G+GKT    I M    +  +  
Sbjct: 17  IKLMGFEEATPIQEKAIPIALSG------GDLIGQAHTGTGKTAAFGIPMVERFSRQQDT 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +I+ P   LA Q  E + +  Q   I    + G      + +AL++    + HII+G
Sbjct: 71  IQGLIITPTRELAVQVAEEMNRIGQVKGIHTLPVYGGQDINRQIRALKK----KPHIIVG 126

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-- 429
           T     D ++           ++L   DE    G        L Q       LL +AT  
Sbjct: 127 TPGRLMDHMKRKTIRLNELTMVVLDEADEMLNMGFIEDIEEILQQVPEERQTLLFSATIS 186

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              + L    L + +   I  K      I    + +    +       +  +      + 
Sbjct: 187 KPIQELARRFLKNPEFIAIKAKEVTVPSIDQSYVEVQEKQKFEVLSTFLDIQSPDLAIVF 246

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +       R V E + +L +   S+  I HG ++   +ESV+  FK G  ++L+AT 
Sbjct: 247 GRTK-------RRVDELYEALSKRGYSAEGI-HGDLTQSKRESVLRQFKEGIIEVLVATD 298

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN------ 603
           V   G+D+   + +   +      + +H++ GR GR  +    I    P    +      
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKKGEAITFVTPREMNHLRLIER 357

Query: 604 ------SYTRLSVLKNTEDGFL-IAEEDLKQRKEGEILGIKQSGMPKFLI----AQPELH 652
                 S   +  +K   +G   +A E L       +  +++ G   +         E  
Sbjct: 358 ITKHKISRRPIPTIKEVIEGQQRLAVEKL-------LKVVEEGGFEHYRRLAEDLLIEQD 410

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
            + L  A   A  ++T++PD T V+    R L
Sbjct: 411 AATLVAA---ALRMITKEPDRTPVQLTEERPL 439


>gi|116206328|ref|XP_001228973.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51]
 gi|121789113|sp|Q2HBE7|DED1_CHAGB RecName: Full=ATP-dependent RNA helicase DED1
 gi|88183054|gb|EAQ90522.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51]
          Length = 688

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 129/373 (34%), Gaps = 44/373 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA----------VEAGG 322
           PT  Q+ +I  ++           +     GSGKT   L  +              ++GG
Sbjct: 221 PTPVQKYSIPIVINGRD------LMACAQTGSGKTGGFLFPIMHQSFTQGPSPIPAQSGG 274

Query: 323 ---------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                     A+I+AP   L  Q YE  +K+   + +   ++ G      + + +ER   
Sbjct: 275 GYRQRKAYPTALILAPTRELVSQIYEEARKFAYRSWVRPCVVYGGADIGSQLRQMER--- 331

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D I+  ++ L  +     DE  R          Q         M  
Sbjct: 332 -GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEP--QIRRIVQGEDMPT 388

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++    DI  + +       +   +  +    E I +    + +  K   +
Sbjct: 389 TGQRQTLMFSATFPRDIQMLAQDFLN-DYVFLSVGRVGSTSENITQKVEYVEDVDKRSVL 447

Query: 489 CPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +              + + +  +    +       IHG  +  ++E  ++ F+NG C
Sbjct: 448 LDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRNGKC 507

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ + + +I  +        +H++ GR GR          ++     
Sbjct: 508 PILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRI-GRTGRAGNTGIATAFFNRGNRG 566

Query: 603 NSYTRLSVLKNTE 615
                L +LK   
Sbjct: 567 IVRELLDLLKEAN 579


>gi|145295298|ref|YP_001138119.1| hypothetical protein cgR_1238 [Corynebacterium glutamicum R]
 gi|140845218|dbj|BAF54217.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 729

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 131/343 (38%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q   I  +++          +     G+GKT    + + + ++      QA+++A
Sbjct: 124 TPSPIQAQTIPILMEGQDV------VGLAQTGTGKTAAFALPILSRIDKSVRSPQALVLA 177

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  + +  +   + V  I G      +   L R     AHI++GT     
Sbjct: 178 PTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRR----GAHIVVGTPGRII 233

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRTL 435
           D ++           L+L   DE    G Q+ +   L        V L +AT     R L
Sbjct: 234 DHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVALFSATMPNGIRRL 293

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L +     +  +      I    + +   +++    +++     +A  +  + + +
Sbjct: 294 SKQYLNNPAEITVKSETRTNTNITQRFLNVAHRNKMDALTRILEVTEFEAMIMFVRTKHE 353

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E       E    L     S+ AI +G ++   +E  +D  K+G   +L+AT V   G+
Sbjct: 354 TE-------EVAEKLRARGFSAAAI-NGDIAQAQRERTVDQLKDGRLDILVATDVAARGL 405

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV   S ++  +  +   + +H++ GR GR       IL   P
Sbjct: 406 DVERISHVLNFDIPNDTESYVHRI-GRTGRAGRTGEAILFVTP 447


>gi|91216282|ref|ZP_01253249.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
 gi|91185420|gb|EAS71796.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
          Length = 423

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 133/359 (37%), Gaps = 38/359 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +PT  QE +I  +L+          +     G+GKT    + +   +           +A
Sbjct: 23  TPTPIQEKSIPAVLEGKDV------LASAQTGTGKTAGFTLPLLQLLSQTPPLRNRPVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q ++ +K Y +   +   +I G + Q  +   L         +++ T  
Sbjct: 77  LILTPTRELAAQVHQSVKDYGKFVDLRSTVIFGGVNQKSQVSTLRN----GVDVLVATPG 132

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLT 438
              D      +   K+ ++++DE  R      L+  +K       +M   P  R TL+ +
Sbjct: 133 RLIDLNNQGLLSLAKVEILVLDEADRMLDMGFLRDIKK-------IMKLIPKQRQTLLFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    +I  +  +   + P+     P N   E IE+    +++ KK   +   I E    
Sbjct: 186 ATFSREIRSLASEFL-KNPVSVESTPENTTVEAIEQQVYRVAKEKKTDLLIKLISEGNWE 244

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +    +     E      A IHG  S   +   +  FK+G+ K+L+AT +  
Sbjct: 245 QVLVFSRTKHGANKLAKKLEAAKIGAAAIHGNKSQGARTKALAGFKSGSVKVLVATDIAS 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            G+D+     ++     +     +H++ GR GR       + L     +        ++
Sbjct: 305 RGLDIPLLPYVVNFELPNVSEDYVHRI-GRTGRAGASGLAVSLVSADETVFLKDIEKLI 362


>gi|147902730|ref|NP_001084200.1| eukaryotic initiation factor 4A-III-B [Xenopus laevis]
 gi|82189798|sp|O42226|I4A3B_XENLA RecName: Full=Eukaryotic initiation factor 4A-III-B;
           Short=XeIF-4AIII; Short=eIF-4A-III-B; Short=eIF4A-III-B;
           AltName: Full=ATP-dependent RNA helicase DDX48-B;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3-B;
           AltName: Full=DEAD box protein 48-B; AltName:
           Full=Eukaryotic translation initiation factor 4A isoform
           3-B
 gi|2443810|gb|AAB71410.1| eukaryotic translation initiation factor XeIF-4AIII [Xenopus
           laevis]
          Length = 414

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    +++   ++      QA+I+A
Sbjct: 63  KPSAIQQKAIKQIIKGRDV------IAQSQSGTGKTATFCVSVLQCLDIQIRETQALILA 116

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q  + +        +      G        + L+       H++ GT     D
Sbjct: 117 PTKELARQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 172

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V L++AT     L +T
Sbjct: 173 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMT 232

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 233 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 285

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 286 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 345

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 346 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 404

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 405 EMPMNVADL 413


>gi|238783457|ref|ZP_04627480.1| ATP-independent RNA helicase dbpA [Yersinia bercovieri ATCC 43970]
 gi|238715702|gb|EEQ07691.1| ATP-independent RNA helicase dbpA [Yersinia bercovieri ATCC 43970]
          Length = 511

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 88/460 (19%), Positives = 176/460 (38%), Gaps = 60/460 (13%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + ++  T  Q +A+  IL     +       +   GSGKT    I +   +  G   
Sbjct: 70  LNELGYTEMTPVQAAALPAILNGQDVR------AKAKTGSGKTAAFGIGLLDKIAVGEFV 123

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  + TQ I +  + G  P  H+  +L        HI++
Sbjct: 124 TQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHA----PHIVV 179

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L+L  + +        R+       A   ++    P  +TL+ ++ 
Sbjct: 180 GTPGRIQEHLRKKTLVLDDL-KILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSAT 238

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I +I+ +   R+P+   +   +     IE+L    +  K+   +   +   +    
Sbjct: 239 YPAGIEQISAR-VQRQPVNVEVDDGDEAP-AIEQLFFETTREKRLPLLISVLSHYQPASA 296

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +      E    S+  +HG +   D++ V+  F N +C++L+AT V   G
Sbjct: 297 VVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARG 356

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN- 613
           +D+ D  +++           +H++ GR GR       + L  P     ++     L+  
Sbjct: 357 LDIKDLELVVNFELAFDPEVHVHRI-GRTGRAGMSGLAVSLCTPQEMTRAHAIEDYLQIK 415

Query: 614 ------------------------TEDGFLIAEEDLKQRKEGEILG--IKQSGMPKFLIA 647
                                     DG   A    K R  G+ILG     +G+    + 
Sbjct: 416 LKWTPADQLSRSANTMLEPEMVTLCIDGGRKA----KIR-PGDILGALTGDAGLTAADVG 470

Query: 648 QPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           + ++    + + I +  AK  L Q      ++G++ +  L
Sbjct: 471 KIDMFPVHAYVAIRKASAKRALQQL-QQGKIKGKNCKARL 509


>gi|296394094|ref|YP_003658978.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296181241|gb|ADG98147.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 548

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 134/345 (38%), Gaps = 39/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q   I  +L           +     G+GKT    + + + ++      QA+++A
Sbjct: 31  TPSPIQAKTIPALLNGQDV------VGLAATGTGKTAAFALPVLSRIDPKLRRPQALVLA 84

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y  +  Q+ V  + G      + +AL R     + +I+GT     
Sbjct: 85  PTRELALQVAEAFGRYASKLPQVSVVCVYGGGSYPVQLQALAR----GSQVIVGTPGRVV 140

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++   L        +L   DE  + G Q+ +           +L +A+   +  + ++
Sbjct: 141 DHLERGTLKLGDLKFLVLDEADEMLKMGFQEDV---------ERVLASASQDKQVALFSA 191

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I KI++    R P++  +       E IE+   +++  +K   +   +E ++ S 
Sbjct: 192 TMPGAIRKISKTYL-RDPVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRILEVEQFSA 250

Query: 500 F------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   E           +   ++G ++   +E  + + + G   +L+AT V   
Sbjct: 251 MIVFVRTKQATEDIAERLRARGFAARPLNGDIAQAARERTVSALRAGKIDILVATDVAAR 310

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+DV   + +   +  H   + +H++ GR GR        L   P
Sbjct: 311 GLDVERITHVFNYDVPHDTESYVHRI-GRTGRAGRAGVSYLFVTP 354


>gi|257790938|ref|YP_003181544.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|257474835|gb|ACV55155.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
          Length = 414

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 127/365 (34%), Gaps = 37/365 (10%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EA 320
             + F+ PT  QE AI  +L+          +     G+GKT    + +   +       
Sbjct: 19  ERMGFTAPTPVQEQAIPLVLEGRDV------VAAATTGTGKTAAFALPLFERIGRAKRPG 72

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A++++P   L QQ      +  + +   +  + G      +   L+R       +++
Sbjct: 73  SPRALVVSPTRELTQQIDAACTQLAKASNRRMLTVMGGTKYKGQIAKLDR----GIDVLV 128

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQ--QRLKLTQKATAPHVLLMTATP 430
            T     D ++           L+L   D     G     +  +    ++   LL +AT 
Sbjct: 129 ATPGRLYDLMERGVVKLRDVEVLVLDEADRMLDMGFWPTMKKVVAATPSSRQTLLFSATL 188

Query: 431 IPRTL--VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
             + +  V + L D    +++ K      I   +IP+  + +      V+   G K   +
Sbjct: 189 DRKVMQSVSSILKDPAFVEVSHKGETADTIDQFMIPVGPMKKPALLRLVLQQRGSKRVIV 248

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     + ++  E      +        IH   + + ++  ++ F  G   +L+AT
Sbjct: 249 FA--------DTKTRAEICTGQLKRAGFRADSIHSDKTQVQRKRALEGFSKGAIDVLVAT 300

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V+  GIDV +   ++  +        +H++ GR GR  E    I    P          
Sbjct: 301 DVLARGIDVSNIEYVVNYDLPESPEDYVHRI-GRTGRAGETGYAISFVSPEAKAQLLDIE 359

Query: 609 SVLKN 613
            +L  
Sbjct: 360 KLLGE 364


>gi|167527009|ref|XP_001747837.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773586|gb|EDQ87224.1| predicted protein [Monosiga brevicollis MX1]
          Length = 532

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/364 (16%), Positives = 127/364 (34%), Gaps = 41/364 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------- 323
           PT  Q+ +I  +      + +   +     GSGKT   L+ +   V   G          
Sbjct: 183 PTPVQKYSIPIV------QAKRDLMACAQTGSGKTAAFLVPILNRVYETGPVPPPPNARR 236

Query: 324 ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                 A+I+AP   LA Q Y   +K++  +++ +  + G      + + L R       
Sbjct: 237 SQQFPVALILAPTRELAIQIYGEAQKFSYRSRVRICCVYGGASPRDQIQDLRR----GCQ 292

Query: 378 IIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +++ T     D ++   + L  +     DE  R          ++        M    I 
Sbjct: 293 LLVATPGRLVDFMERGVIGLDSIRFLVLDEADRMLDMGFEPQIRRIVEED--NMPQVGIR 350

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++    DI  + +       +   +  +    E I+++   + E  K   +   I
Sbjct: 351 QTLMFSATFPKDIQMLAQDFLD-DYVHLSVGRVGSTSENIQQIVHWIDEADKRPSLLDLI 409

Query: 493 EEKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
                 +        +   +               IHG  +  ++E  +  F+ G   +L
Sbjct: 410 SAASSEDLFLIFVETKKAADALEYYLTMQGRPATSIHGDRTQYEREEALADFRAGRRPIL 469

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+D+ +   +I  +        +H++ GR GR     + +  ++      + 
Sbjct: 470 VATAVAARGLDIPNVKHVINFDLPSDIDEYVHRI-GRTGRAGHKGTAVSFFNDKNRNVAR 528

Query: 606 TRLS 609
             L+
Sbjct: 529 DLLN 532


>gi|332703129|ref|ZP_08423217.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553278|gb|EGJ50322.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 532

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 126/347 (36%), Gaps = 36/347 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           + ++ F   +  Q  AI  ++           + Q   G+GKT    I +  AV+     
Sbjct: 19  IEDMGFEEASPIQALAIPLVMAGRDV------VGQAQTGTGKTAAFGIPILEAVDPRSHD 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  E +    +    + V  + G  P   + KAL +       I+I
Sbjct: 73  LQALVLCPTRELAIQVAEELNTLAKYKLNLRVLPVYGGQPIDRQFKALRQ----GVQIVI 128

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE    G ++ +   L         +  +AT 
Sbjct: 129 GTPGRVMDHMERGTLKLGKVRMVVLDEADEMLDMGFREDIERILDDVPEERQTIFFSATM 188

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L    L   +  K++ K      ++ +   + R   +    +++     K   +
Sbjct: 189 RPEIMRLAEKYLDKPEFVKVSHKVLTVPNVEQIYYEVPRFGRLEAMCRIIDFYNPKLTVV 248

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    +  + V E    L      +  + HG M+   ++ VM  F+ G+ ++LIAT
Sbjct: 249 F-------ANTKKGVDELVEHLQARGYMADGL-HGDMNQAQRDRVMAKFRAGSIEILIAT 300

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   GIDV D   +   +        +H++ GR GR          
Sbjct: 301 DVAARGIDVEDIEAVFNYDIPSDVEYYVHRI-GRTGRAGRSGRAFTF 346


>gi|270293148|ref|ZP_06199359.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M143]
 gi|270279127|gb|EFA24973.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M143]
          Length = 520

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 133/363 (36%), Gaps = 34/363 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +   L L  +        DE    G        +++       LL +AT     + + + 
Sbjct: 135 KRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  KI  K    + +    I +   ++     +++  E  +   +  +       
Sbjct: 195 FMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+ 
Sbjct: 249 --KRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    I    P          ++ K    G 
Sbjct: 307 GVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGL 365

Query: 619 LIA 621
             A
Sbjct: 366 KPA 368


>gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 491

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 131/358 (36%), Gaps = 30/358 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q+ AI  +L           +     G+GKT    + +   +             
Sbjct: 23  TPTPIQQQAIPVVLSGRDV------MGGAQTGTGKTAGFTLPLLQRLARHASTSTSPARH 76

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+AP   LA Q +E +K Y++   +    I G +    + + L         I++
Sbjct: 77  PVRALILAPTRELAMQVFESVKTYSKYVPLRSTCIYGGVDMKPQIQDLRN----GIEIVV 132

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  V E        R+           +L       ++L+ ++ 
Sbjct: 133 ATPGRLLDHVQQKTIQLGQV-EMLVLDEADRMLDMGFIPDIRRILDLLPAARQSLLFSAT 191

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
              +I K+ ++   ++P    +   N + E I      +S G K   +   +  + ++  
Sbjct: 192 FSDEIKKLADQ-MLKEPQLIEVARRNMVSETITHRVHPVSAGLKRNLLAHLLRHEPDTQA 250

Query: 500 -----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +    R     E    +   IHG      +   +++FK+G  ++L+AT V   G
Sbjct: 251 LVFVATKLACSRLAHFLERHGIAADAIHGDKGQAQRTDTLEAFKSGKLRVLVATDVAARG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+ D   +I     H     +H++ GR GR     + + L       +      ++K
Sbjct: 311 LDIDDLPSVINFELPHTAEDYVHRI-GRTGRAGRQGNAVSLVSAEERHHLAEIEKLIK 367


>gi|313893353|ref|ZP_07826927.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442122|gb|EFR60540.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 432

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 128/352 (36%), Gaps = 22/352 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE +I  + +          I +   G+GKTL  L+ +   V       Q +I+A
Sbjct: 24  EPTPIQEQSIPVVFKG------NDVIAKAQTGTGKTLAFLLPILQRVHTDVHQEQVLIIA 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L +Q  +  K+      + +  + G      + + L R    +  +I+GT     D
Sbjct: 78  PTRELIKQIADEAKEIGAILNVDILPLIGGKTIEAQLQQLGR----RPQVILGTPGRLLD 133

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +   L L  +         Q L +          L++ T   R L+L S    D  + 
Sbjct: 134 HAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIES--LISQTDANRQLLLFSATIPDKIRN 191

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVE 505
             K    KP+       +   E I++   +++  +K   +   IEE        F +  E
Sbjct: 192 LAKAYMSKPVSVTAEGKHVTLESIDQRVYMMNPEEKTERLIKMIEEDNPFLAIVFCNKRE 251

Query: 506 RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
               L    T+   +IA +HG ++   +  ++  F     ++L+AT +   GID+   + 
Sbjct: 252 GAVRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITH 311

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +   +        +H++ GR GR       +    P            ++ T
Sbjct: 312 VYNYDVPRDVDYYIHRI-GRTGRAGNSGVAVTFATPQDESWLRRIERAIQAT 362


>gi|196250549|ref|ZP_03149239.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
 gi|196209898|gb|EDY04667.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
          Length = 467

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 81/356 (22%), Positives = 142/356 (39%), Gaps = 35/356 (9%)

Query: 259 GKIAQKILRNIPFSPT-KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K   K +  + F  T   Q   I   LQ+         I Q   G+GKT    I +   
Sbjct: 10  SKEVMKAIERMGFEETTPIQAKTIPLSLQNKDV------IGQAQTGTGKTAAFGIPIVEK 63

Query: 318 VE--AGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           V+   G  QA+++AP   LA Q  E + K     ++ V  I G      + +AL++    
Sbjct: 64  VDVKNGAIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKK---- 119

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVL 424
             H+I+GT     D I    L L  V        DE    G  + +   L    T    L
Sbjct: 120 HPHVIVGTPGRIIDHINRGTLRLEHVRTVVLDEADEMLNMGFIEDIEAILRHVPTERQTL 179

Query: 425 LMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT P P R +    + D ++ K+  K      I+   + ++   +     +++  + 
Sbjct: 180 LFSATMPDPIRRIAERFMNDPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQA 239

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            +   +  + +       R V E   +L+    ++  I HG +S   + SV+  FK G+ 
Sbjct: 240 PELAIVFGRTK-------RRVDELAEALNLRGYAAEGI-HGDLSQAKRLSVLRKFKEGSI 291

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ++L+AT V   G+D+   + +   +      + +H++ GR GR  +    +    P
Sbjct: 292 EILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKTGVAMTFVTP 346


>gi|167628080|ref|YP_001678580.1| DEAD/DEAH box helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241668618|ref|ZP_04756196.1| DEAD-box subfamily ATP-dependent helicase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877152|ref|ZP_05249862.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167598081|gb|ABZ88079.1| DEAD-box subfamily ATP-dependent helicase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|254843173|gb|EET21587.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 581

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 148/382 (38%), Gaps = 45/382 (11%)

Query: 269 IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----AGG 322
           + +  PT  Q+ AI  IL           + Q   G+GKT    + +   ++        
Sbjct: 25  LGYENPTPIQQYAIPYILSGRDV------LGQAQTGTGKTAAFALPLINNMDLESRDRAP 78

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E  + + +N   + V  I G      + +AL++       +++G
Sbjct: 79  QVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALKQ----GVKVVVG 134

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPI 431
           T     D I+           L+L   DE  R G     R  L+  +     LL +AT  
Sbjct: 135 TTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSDECQRLLFSATIP 194

Query: 432 PRTLVLTSLGDIDISKI----TEKPAGRKPIKTVIIP-INRIDEVIERLKVVLSEGKKAY 486
                +      +  KI      K A     K ++I    +ID +   L+V  ++G   +
Sbjct: 195 TDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLEVEETDGVIIF 254

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                          S +E  ++L       +A I+G M    +E ++D F++    +L+
Sbjct: 255 V----------KTKTSTIEVADNLK-ALGYRVAAINGDMQQSQREYIVDQFRSAKSDVLV 303

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V+  GID+   S +I  +  +     +H++ GR GR       I L      +   T
Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDSDTYVHRI-GRTGRAGREGISISLVPLKEMRFLRT 362

Query: 607 RLSVLKN-TEDGFLIAEEDLKQ 627
                 +  ++ F+ + +DL Q
Sbjct: 363 LERFTGSPMQEVFMPSAKDLAQ 384


>gi|15672332|ref|NP_266506.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723219|gb|AAK04448.1|AE006272_2 ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326405930|gb|ADZ63001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 547

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/361 (21%), Positives = 135/361 (37%), Gaps = 42/361 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE  IK  L+          + Q   G+GKT    +     ++A     QA+++A
Sbjct: 23  QPTPIQEQTIKLALEGRDV------LGQAQTGTGKTAAFGLPTIEKIDASNPAIQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ ++  + V  + G      + K L+      AHI++GT     D
Sbjct: 77  PTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLKA----GAHIVVGTPGRLVD 132

Query: 389 SIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+           LIL   DE    G  + +    + T             +TL+ ++ 
Sbjct: 133 LIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPE---------ARQTLLFSAT 183

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---E 497
              DI KI  K   + P    I       + I++  V   E +K   +   ++ ++    
Sbjct: 184 MPNDIKKIGVKFM-KNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLLDVERPELA 242

Query: 498 SNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F     R + L             +HG +    + +V+  FK G   +L+AT V   G
Sbjct: 243 IVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVATDVAARG 302

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   + +   +      + +H++ GR GR  +    +       S N    L  ++N 
Sbjct: 303 LDVSGVTHVYNYDITQDQESYVHRI-GRTGRAGKSGRSVTFV----SYNEMGYLRAIENM 357

Query: 615 E 615
            
Sbjct: 358 T 358


>gi|50554139|ref|XP_504478.1| YALI0E27715p [Yarrowia lipolytica]
 gi|74659776|sp|Q6C4D4|DBP2_YARLI RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49650347|emb|CAG80081.1| YALI0E27715p [Yarrowia lipolytica]
          Length = 552

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 132/366 (36%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           I     GSGKTL   +     + A        G  
Sbjct: 138 KPTAIQCQGWPMALTGRDV------IGIASTGSGKTLSYCLPAIVHINAQPMLSHGDGPI 191

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +   K+ ++++I    + G +P+  + + L R       I+I T 
Sbjct: 192 VLVLAPTRELAVQIQQECSKFGKSSKIRNTCVYGGVPRGQQIRDLAR----GVEIVIATP 247

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 248 GRLLDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 307

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYW 487
            + L    L D     I           T ++ +     + D +++ L+ V+   +    
Sbjct: 308 VQRLAHDYLKDQIQVNIGSLELSASHNITQVVEVCTEYEKRDRLVKHLETVMENKESKCL 367

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            R   +    L +    ++AI HG     +++ V++ F+ G   +++A
Sbjct: 368 IFT-------GTKRVADDITKFLRQDGWPALAI-HGDKQQQERDWVLNEFRQGKSPIMVA 419

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV   + +I  +        +H++ GR GR     +    +     K +   
Sbjct: 420 TDVASRGIDVKGINFVINYDYPSNSEDYVHRI-GRTGRAGTKGTAYTYFTEDNRKQARDL 478

Query: 608 LSVLKN 613
           L +L+ 
Sbjct: 479 LVILRE 484


>gi|291614701|ref|YP_003524858.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584813|gb|ADE12471.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 450

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 129/359 (35%), Gaps = 30/359 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI   L+          +     G+GKT    + M   +             
Sbjct: 26  TPTPIQAQAIPLALEGHD------LMAGAQTGTGKTAAFALPMLQKLLPHASASTSPAKH 79

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q  E +K Y ++T +   ++ G +    +   L+        I++
Sbjct: 80  PVRALILVPTRELAVQVEESVKAYAKHTNLRSLVVYGGVDIKTQTPHLKT----GVEILV 135

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D I+   ++L  V +        R+       A   +L       ++L+ ++ 
Sbjct: 136 ATPGRLLDHIEQKTVLLNQV-QMLVLDEADRMLDMGFMPALKRILALLPRQRQSLMFSAT 194

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
              +I K++E      P    +   N   E I +   ++ +  K   +   +        
Sbjct: 195 FSNEIKKLSEDFMNY-PTLIEVARSNASAENITQKVYLVEQSGKHQLLAQLLRGDDAKQV 253

Query: 500 -----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +    R     +    S   IHG  S +++   +D+FK G   +LIAT V   G
Sbjct: 254 IVFTKTKLTASRLAKQLQREGVSADAIHGDKSQLERMQALDAFKQGRVAVLIATDVAARG 313

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           +D+    ++I     H     +H++ GR GR     + I L  P   K       ++K 
Sbjct: 314 LDIDSLPMVINYEIPHAAEDYVHRI-GRTGRAGASGTAISLVSPEEEKYLLEIEKLIKK 371


>gi|218670941|ref|ZP_03520612.1| ATP-dependent DNA helicase RecG [Rhizobium etli GR56]
          Length = 141

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/141 (39%), Positives = 80/141 (56%), Gaps = 1/141 (0%)

Query: 1   MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPK 60
           MRP+ L+PLF+P+S   GVG K +  L K++      + R IDLLF+ P S IDR  +P 
Sbjct: 1   MRPAILDPLFSPISGLPGVGPKIAELLVKLLGRETPEDCRVIDLLFHAPFSLIDRRNQPG 60

Query: 61  ISEISEERIVTITGYISQHSSFQLQK-RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFE 119
           I+   +  IVTIT  + +H      K   PY++ L+D TGE+TL+FF  +   L+     
Sbjct: 61  IARAPQGAIVTITARVDRHQVPPRGKINVPYRVFLHDETGELTLVFFRGQAAWLEKQLPI 120

Query: 120 GRKITVTGKIKKLKNRIIMVH 140
             ++TV+GK+     R  MVH
Sbjct: 121 DAEVTVSGKVDWFNGRASMVH 141


>gi|153827809|ref|ZP_01980476.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
 gi|148876654|gb|EDL74789.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
          Length = 428

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 145/366 (39%), Gaps = 35/366 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 44  EPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 97

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  E + +      +    + G + +A ++ AL        +I++ T     D 
Sbjct: 98  TRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKAEQQNALAE----NPNILVATTGRLFDL 153

Query: 389 ---SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               ++  ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 154 TQSGLRLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTATVRQTVMCSATFSDD 206

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 207 LKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 266

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S  ++E+ +  FKNG+ ++LIAT ++  GI +  
Sbjct: 267 AKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATDLLARGIHIEQ 326

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPLS----KNSYTRLSVLKNT 614
             ++I           +H++ GR  R  +    + L+ H  +       + T+  +    
Sbjct: 327 LPVVINFELPMHAETYVHRV-GRTARAGQQGIALSLVCHGEMDALNAIRTLTQRQLPVQN 385

Query: 615 EDGFLI 620
            DGF +
Sbjct: 386 LDGFPV 391


>gi|282599579|ref|ZP_05971084.2| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
 gi|282568585|gb|EFB74120.1| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
          Length = 457

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 137/370 (37%), Gaps = 39/370 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           +  + + SPT  Q+ AI  +L           +     G+GKT    + +   +    + 
Sbjct: 24  INELGYDSPTPIQQQAIPAVLAG------NDLLASAQTGTGKTAGFTLPILQKLVDAPRS 77

Query: 324 --------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                   A+I+ P   LA Q  E +K+Y+++  I   ++ G +    +   L       
Sbjct: 78  GNNRRPIRALILTPTRELAAQVAENVKEYSRHLNIRSFVVFGGVSINPQMMKLRS----G 133

Query: 376 AHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
             ++I T     D     ++   ++ ++++DE  R      +           ++     
Sbjct: 134 VDVLIATPGRLLDLEHQNAVDLSQVEILVLDEADRMLDMGFIHDI------RRVITKLPK 187

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + L+ ++    DI ++  K     P+   + P N   E + +   ++ + +KA  +  
Sbjct: 188 KRQNLLFSATFSDDIKQLASKLLN-NPVSIEVAPRNSASEQVTQYVHLVDKKRKAELLSF 246

Query: 491 QIEEKKESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            I  +       F       N L EH        A IHG  S   +   +  FK+G  ++
Sbjct: 247 MIGRENWQQVLVFTRTKHGANRLAEHLNKDGIKSAAIHGNKSQGARTRALADFKSGDIRV 306

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT +   G+D+     ++     +     +H++ GR GR E     I L      K  
Sbjct: 307 LVATDIAARGLDIEQLPHVVNFELPNVAEDYVHRI-GRTGRAEATGQAISLVCIDEVKLL 365

Query: 605 YTRLSVLKNT 614
                +LK +
Sbjct: 366 KDIEKLLKKS 375


>gi|332285242|ref|YP_004417153.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
 gi|330429195|gb|AEC20529.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
          Length = 455

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/382 (19%), Positives = 135/382 (35%), Gaps = 42/382 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             +   + Q +      +PT  Q  A+  +   M  ++ M        G+GKT    + +
Sbjct: 17  FGLHPSVLQAVTETGYTTPTPIQAQAMPMV---MDGRDVMGA---AQTGTGKTAAFTLPI 70

Query: 315 AAAVEA-----------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
              +               +A+I+ P   LA Q  + +  Y + T +   ++ G +    
Sbjct: 71  LHRLMQFANTSASPARHPVRALILTPTRELADQVADSVTTYAKFTPLRSTVVFGGVDIGP 130

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK- 417
           +R AL R       I+I T     D ++   + L  V     DE  R      L    + 
Sbjct: 131 QRDALRRGCE----ILIATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLDRI 186

Query: 418 ----ATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
                     LL +AT     R L  + L +    ++  + A    +  +  P+   D+ 
Sbjct: 187 VRLLPAKRQGLLFSATFSNEIRKLGRSYLSNPAEIEVAARNATADTVTQIAYPLAGSDKR 246

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
              + +V S G     +         SN +    R              IHG  S +D+ 
Sbjct: 247 AAVVHLVKSRGFNQVIVF--------SNTKIGTSRLARELVRDGVKAESIHGDKSQLDRM 298

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             +D+FK G  ++L+AT V   G+DV     +I  +  +     +H++ GR GR      
Sbjct: 299 KALDAFKAGELEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRI-GRTGRAGNTGE 357

Query: 592 CILLYHPPLSKNSYTRLSVLKN 613
            I  + P   +       ++K 
Sbjct: 358 AIAFFTPEEERYLLDIEKLIKA 379


>gi|282890698|ref|ZP_06299218.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499291|gb|EFB41590.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 538

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/343 (21%), Positives = 134/343 (39%), Gaps = 37/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAP 329
            P+  QE  I  IL           + Q   G+GKT    +     ++  AG   +++ P
Sbjct: 71  QPSPIQEKVIPIILNGQDV------VAQAQTGTGKTAAFGLPSLNRLDKAAGVGLLVITP 124

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + + +  +   I    + G      +   +ER     A +++ T     D 
Sbjct: 125 TRELAVQVSDELYRLGKYCGIRTIAVYGGQSIQRQIDGIER----GAQVVVATPGRLLDL 180

Query: 390 IQYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVL 437
           ++  +L        +L   DE    G     +   T        LL +AT P+P + L  
Sbjct: 181 LKSRRLSHFSPPIVVLDEADEMLNMGFLEDIQEIFTFLPKERQTLLFSATMPLPIQKLAK 240

Query: 438 TSLGDIDISKITEKPAGRKPIKT--VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           T L + +  KIT+K    + I+    +I  +  D+ + RL     E  K+   C      
Sbjct: 241 TFLREPEFIKITKKETASQNIQQICYVIHESERDDALVRLLDA-QEEAKSIIFCRT---- 295

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +  V+R +S           +HG M    ++ V+D F+    ++L AT V   G+
Sbjct: 296 -----KKDVDRVSSFLTSRGYGARGLHGDMEQPQRQRVIDGFRQNEFQILAATDVAARGL 350

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +V+D + +   +  +   + +H++ GR GR       I L +P
Sbjct: 351 NVLDVTHVYNYHLPYETESYVHRI-GRTGRAGNKGIAITLLNP 392


>gi|99032027|pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032028|pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032029|pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032030|pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
          Length = 434

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 134/365 (36%), Gaps = 43/365 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QA 324
           PT  Q+ +I  I            +     GSGKT   L+ + + +            Q 
Sbjct: 79  PTPIQKCSIPVISSGRD------LMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQV 132

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI++P   LA Q +   +K+   + + + I+ G     H+ + + R      H++I T  
Sbjct: 133 VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR----GCHVVIATPG 188

Query: 385 LFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQ----KATAPHVLLMTATPIP 432
              D +            ++L   D     G  + ++              L+ +AT   
Sbjct: 189 RLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPE 248

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + +    L +     I         +K  I  +N+  +  + ++++    ++A     
Sbjct: 249 EIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEIL---SEQADGTIV 305

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +E K+ ++F        S           IHG      +E  +  FKNG+ K+LIAT+V
Sbjct: 306 FVETKRGADF------LASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV 359

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN-SYTRLS 609
              G+D+ +   +I  +        +H++ GR GR          + P   +  +   + 
Sbjct: 360 ASRGLDIKNIKHVINYDMPSKIDDYVHRI-GRTGRVGNNGRATSFFDPEKDRAIAADLVK 418

Query: 610 VLKNT 614
           +L+ +
Sbjct: 419 ILEGS 423


>gi|50409637|ref|XP_456892.1| DEHA2A12958p [Debaryomyces hansenii CBS767]
 gi|74659543|sp|Q6BY27|DBP2_DEBHA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49652556|emb|CAG84869.1| DEHA2A12958p [Debaryomyces hansenii]
          Length = 536

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 134/373 (35%), Gaps = 44/373 (11%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------ 320
           +  P  PT  Q       L        M+ I     GSGKTL   +     + A      
Sbjct: 123 QGFP-KPTSIQCQGWPMAL----SGRDMVGI--ASTGSGKTLSYCLPSIVHINAQPLLSP 175

Query: 321 --GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G   +++AP   LA Q  +   K+  +++I    + G  P+  + + L R       I
Sbjct: 176 GDGPIVLVLAPTRELAVQIQQECSKFGSSSRIRNTCVYGGAPKGQQIRDLAR----GVEI 231

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTA 428
            I T     D ++  K        L+L   D     G + +++    Q       L+ +A
Sbjct: 232 CIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 291

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKT------VIIPINRIDEVIERLKVVLSEG 482
           T       LT     D  ++T          T      V+    + D +I+ L+   ++ 
Sbjct: 292 TWPKEVQALTRDYLNDPIQVTVGSLELAASHTITQLVEVVTEFEKRDRLIKHLETATADP 351

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           +    I         S  R+  E  N L      ++AI HG     +++ V+  FK G  
Sbjct: 352 EAKCLIF-------ASTKRTCDEITNYLRADGWPALAI-HGDKQQGERDWVLKEFKTGKS 403

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +++AT V   GIDV   S +I  +        +H++ GR GR     + +  +    SK
Sbjct: 404 PIMVATDVAARGIDVKGISYVINLDMPGNIEDYVHRI-GRTGRAGSTGTAVSFFTDNNSK 462

Query: 603 NSYTRLSVLKNTE 615
                  +++   
Sbjct: 463 LGGDLCKIMREAN 475


>gi|292558860|gb|ADE31861.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           suis GZ1]
          Length = 502

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 127/344 (36%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA---VIMA 328
           +P+  QE  I   L+          I Q   G+GKT    +     ++   QA   +I+A
Sbjct: 11  TPSPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIDTNNQAIQSLIIA 64

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + K+ +   + V  + G      + KAL       AHI++GT     D
Sbjct: 65  PTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLD 120

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT---PIPRTL 435
            I+   L L  V        DE    G        + +   +   LL +AT   PI R +
Sbjct: 121 LIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQTLLFSATMPEPIKR-I 179

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +  + + +  KI  K      +    + +   ++     +++  +  +   +  +    
Sbjct: 180 GVKFMKEPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRLMDVDQPELSIVFGRT--- 236

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+
Sbjct: 237 -----KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGL 291

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           D+   + +   +      + +H++ GR GR  +    I    P 
Sbjct: 292 DISGVTHVYNYDIPQDPESYVHRI-GRTGRAGQSGQSITFVSPN 334


>gi|302696669|ref|XP_003038013.1| hypothetical protein SCHCODRAFT_43190 [Schizophyllum commune H4-8]
 gi|300111710|gb|EFJ03111.1| hypothetical protein SCHCODRAFT_43190 [Schizophyllum commune H4-8]
          Length = 674

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 80/453 (17%), Positives = 159/453 (35%), Gaps = 63/453 (13%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           +++ + ++ PT  Q  A+  I+           I     GSGKT+  LI +   ++    
Sbjct: 94  VIKRLNYTAPTPIQAQAVPAIMSGRDV------IGVAKTGSGKTIAFLIPLFRHIKDQRP 147

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  A++M P   LA Q +   K + +   +      G  P   +   L++     
Sbjct: 148 LEPMEGPIALVMTPTRELATQIHRECKPFLKVLNLRAVCAYGGSPIKDQIADLKK----G 203

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K          
Sbjct: 204 AEIIVCTPGRMIDLLTANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIINNIR---- 259

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++     +  +  K   +KP++  +   + +   IE++  V  E  K   
Sbjct: 260 --PDRQTVLFSATFPKQMDSLARK-ILKKPLEITVGGRSVVAAEIEQIVEVREEDTKFMR 316

Query: 488 ICPQIEEKKESNFRSV-------VERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
           +   + +    +            E  ++L             +HG    +D+++ +  F
Sbjct: 317 LLEILGQMYNEDPDCRTLIFVDRHEAADNLLRELMRKGYLCMSLHGGREQVDRDATIADF 376

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   ++IAT+V   G+DV    ++I  +A +     +H+  GR GR     +C+    
Sbjct: 377 KAGVVPIVIATSVAARGLDVKQLKLVINYDAPNHMEDYVHR-AGRTGRAGNKGTCVTFIE 435

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS---------GMPKFLIAQ 648
           P   + S      LK +        ++L+    G +  +K           G        
Sbjct: 436 PEQERYSVDIYRALKASNASV---PKELEAMANGFLDKVKAGKAHVAGSGFGGKGLDRLD 492

Query: 649 PELHDSLLEIARKDAKHILTQDPDLTSVRGQSI 681
            E        A++ A+     +PD      ++ 
Sbjct: 493 SERD------AKQKAERKAYGEPDQPQAEEKAA 519


>gi|269963602|ref|ZP_06177925.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831615|gb|EEZ85751.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 430

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 68/371 (18%), Positives = 142/371 (38%), Gaps = 27/371 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
             T  Q+ AI      M+++   +       G+GKT    + M   +   G+        
Sbjct: 23  KLTPIQQKAIP-----MARRGHDIF-ATAQTGTGKTAAFSLPMIQRLLDSGRNASRKTAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+IMAP   LA+Q  + IK YT+ T + V  I G      +  ALE        I++ T 
Sbjct: 77  ALIMAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMPSQISALEN----GVDILVATP 132

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
              ++ I+   + +  + E   F    R+       A   +++     P+ ++ ++    
Sbjct: 133 GRLEEHIEQGNVSVANI-EFLVFDEADRILDMGFINAVRKIMLDVDTDPQIMMFSATTST 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---F 500
            ++ +  +   RKP +  +   N   + +  +   + + +K   +   I  K       F
Sbjct: 192 QLNVLA-RDILRKPKRIEVERANTTAQTVAHVLYPVDQERKTELLSELIGRKNWKQVLVF 250

Query: 501 RSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +  E  N + +          + HG  +   +   ++ FK G  ++++AT V   G+D+
Sbjct: 251 VNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKVRVMVATDVAARGLDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            D   ++  +        +H++ GR GR  +    +   +           ++++     
Sbjct: 311 EDLPHVVNYDMPFLAEDYVHRI-GRTGRAGKQGHAVSFVNREEELTVVQVENLIQQHIRR 369

Query: 618 FLIAEEDLKQR 628
             +A  + KQR
Sbjct: 370 IELAGYEPKQR 380


>gi|221059537|ref|XP_002260414.1| helicase [Plasmodium knowlesi strain H]
 gi|193810487|emb|CAQ41681.1| helicase, putative [Plasmodium knowlesi strain H]
          Length = 528

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 140/369 (37%), Gaps = 45/369 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       L           I + + GSGKTL  ++     + A        G  
Sbjct: 135 TPTPIQIQGWPIALSGKD------MIGKAETGSGKTLAFILPAFVHILAQPSLKYGDGPI 188

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA+Q  +   K++  ++I      G +P++ +  AL++      HI+I   
Sbjct: 189 VLVLAPTRELAEQIRQECVKFSVESKIRNTCAYGGVPKSGQIYALKQ----GVHILIACP 244

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D ++           L+L   D+    G + +++           +    P  +TL
Sbjct: 245 GRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEIQIRKI---------VEQIRPDRQTL 295

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + ++    ++  +      ++PI   +  +       I++   ++ E +K   +   ++ 
Sbjct: 296 MWSATWPKEVQSLARDLCKQQPIHVNVGSLTLTACRRIKQEIYLIEEHEKIANLKLLLQR 355

Query: 495 KKESNFRSVVERFNSLHEHFTSSIA--------IIHGRMSDIDKESVMDSFKNGTCKLLI 546
               N R +V      +  F +            IHG     ++  V++ FK G   +LI
Sbjct: 356 IFRDNDRIIVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLNDFKTGKSPILI 415

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ D   ++  +  +     +H++ GR GR     +          + +  
Sbjct: 416 ATDVASRGLDIKDVKYVVNFDFPNQIEDYVHRI-GRTGRAGAHGASFTFLTSDKYRLARD 474

Query: 607 RLSVLKNTE 615
            + +L+ +E
Sbjct: 475 LVKILRESE 483


>gi|217962948|ref|YP_002341526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|229142204|ref|ZP_04270728.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST26]
 gi|217066069|gb|ACJ80319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|228641222|gb|EEK97529.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST26]
          Length = 481

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 81/363 (22%), Positives = 136/363 (37%), Gaps = 39/363 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           PT+ Q   I   LQ      +   +++   GSGKT    I +   VE      QA+++ P
Sbjct: 27  PTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTP 80

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I    +  +I    I G  P A ++  L++    + HI++GT     D 
Sbjct: 81  TRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDH 136

Query: 390 IQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLTS 439
           I+           L++   DE    G   ++   + +  T    +L +AT       L+ 
Sbjct: 137 IEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTMLFSATLPEDVERLSR 196

Query: 440 LGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                 + I  K AG     I+  +      +++     V   E   +  I  + +E  +
Sbjct: 197 TYMNAPTHIEIKAAGITTDKIEHTLFEAIEDEKLSLLKDVTTIENPDSCIIFCRTQENVD 256

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             +R          +        IHG M   D+  VMD F+ G  + L+AT V   GID+
Sbjct: 257 HVYRQ--------LKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDI 308

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            + + +I  +      + +H+  GR GR       I    P  ++        +     G
Sbjct: 309 DNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENRFLEEIEEYI-----G 362

Query: 618 FLI 620
           F I
Sbjct: 363 FEI 365


>gi|284042564|ref|YP_003392904.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283946785|gb|ADB49529.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 481

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/352 (20%), Positives = 137/352 (38%), Gaps = 39/352 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           LR++ +  P+  QE AI  +L      N M  I Q   GSGKT    + +   V+     
Sbjct: 17  LRDVGYENPSPIQEQAIPPLLAG----NDM--IGQAQTGSGKTAAFGLPLMEYVDPSDRD 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   L  Q  + ++ Y     I V  + G  P   ++  L         I++G
Sbjct: 71  VQALVLTPTRELCIQVTQALRSYGARKGIDVVAVFGGAPIRSQQAQLRA----GGQIVVG 126

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D I  + L        +L   DE    G  + ++           L       +
Sbjct: 127 TVGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKI---------LALTPGSRQ 177

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T + ++    +I K++E+     P+   +       + +E+  + +S+  K   +   +E
Sbjct: 178 TALFSATMPPEIRKLSERYL-YNPVHVKVRAATLTVDTVEQFSLEMSQRDKPDMLGTVLE 236

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +K          +   ++          ++  +HG MS   ++ VM SFK+G   +L+A
Sbjct: 237 SEKPDQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPILVA 296

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           T V   G+D+   + ++  +        +H++ GR GR       I  Y   
Sbjct: 297 TDVAARGLDISSVTHVVNFDVPTSPDVYVHRI-GRTGRVGRSGRAITFYDSK 347


>gi|207727993|ref|YP_002256387.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|206591237|emb|CAQ56849.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
          Length = 559

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/395 (16%), Positives = 135/395 (34%), Gaps = 44/395 (11%)

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           R+  +  +            + +  + +  PT  Q  AI  IL+          +     
Sbjct: 10  RRSNRFSMSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKG------GDLLAGAQT 63

Query: 303 GSGKTLVALIAMAAAVEAGG--------------QAVIMAPIGILAQQHYEFIKKYTQNT 348
           G+GKT    + +   + A                +A+++ P   LA Q  E ++ Y +  
Sbjct: 64  GTGKTAGFTLPLLHRLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYL 123

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQ 403
            +   ++ G +    +  AL+R       I++ T     D +         + L+++DE 
Sbjct: 124 PLKSMVMFGGVGINPQIDALKR----GVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEA 179

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            R      +   +K      +L    P  + L+ ++    DI  + ++    +P    + 
Sbjct: 180 DRMLDMGFIHDIRK------ILNILPPKRQNLLFSATFSDDIRALADRLLD-QPALIEVA 232

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSS 517
             N   E +E+    +   +K   +   + +            +    R          S
Sbjct: 233 RRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIS 292

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              IHG  S   +   +  FK GT ++L+AT +   GID+     ++  +  +     +H
Sbjct: 293 ALAIHGNKSQSARTRALSEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVH 352

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           ++ GR GR       I L              ++K
Sbjct: 353 RI-GRTGRAGAQGEAISLVCVDEHGLLRDIERLIK 386


>gi|159131126|gb|EDP56239.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus A1163]
          Length = 1211

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 85/434 (19%), Positives = 155/434 (35%), Gaps = 59/434 (13%)

Query: 265  ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----- 318
            +++ + +  PT  Q  AI  I+           I     GSGKT+  LI M   +     
Sbjct: 589  VIQKLGYENPTSIQSQAIPAIMSGRDV------IGVAKTGSGKTIAFLIPMFRHIRDQRP 642

Query: 319  ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                 G   +IM P   LA Q ++  K + +   +      G  P   +   L+R     
Sbjct: 643  LENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKR----G 698

Query: 376  AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            A I++ T     D +           ++  V++DE  R           K      ++  
Sbjct: 699  AEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMK------IMAN 752

Query: 428  ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              P  +T++ ++    ++  +  K    KPI+ V+   + +   I ++  V +E  K   
Sbjct: 753  IRPDRQTVLFSATFPRNMEALARKSLT-KPIEIVVGGKSVVAPEITQIVEVRNEDTKFVR 811

Query: 488  ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
            +   +         E+ +   F    E  ++L             IHG    ID++S ++
Sbjct: 812  LLEILGNLYSDDANEDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIE 871

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             FK G   +LIAT+V   G+DV    +++  +A +     +H+  GR GR     + +  
Sbjct: 872  DFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 930

Query: 596  YHPPLSKNSYTRLSVLKNTEDGFLIA-----EED--LKQRKEGEILGIKQSGM--PKFLI 646
                  + S      L+    G  +        D  L++ K G+      SG        
Sbjct: 931  LTEEQERYSVDIAKALRQ--SGQKVPEPVQKMVDSFLEKVKAGK-EKASASGFGGKGLER 987

Query: 647  AQPELHDSLLEIAR 660
               E   + +   R
Sbjct: 988  LDQERDAARMRERR 1001


>gi|71907449|ref|YP_285036.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71847070|gb|AAZ46566.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 447

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/371 (18%), Positives = 132/371 (35%), Gaps = 38/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----- 319
           L  + +  PT  Q  AI  +L           +     G+GKT    + +   +      
Sbjct: 16  LETLGYETPTPIQAQAIPAVLAGRD------LMAAAQTGTGKTAGFALPILQRLSESEDK 69

Query: 320 ---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 + +++ P   LA+Q +   ++Y ++  +      G +    +   L R      
Sbjct: 70  VASNSIRVLVLVPTRELAEQVHASFRQYGEHLAVSTYAAYGGVSINPQMMRLRR----GV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +++ T     D     +I++ ++  +++DE  R        L          L  A P 
Sbjct: 126 DVLVATPGRLIDLFTQNAIKFKQVQTLVLDEADRM-------LDLGFAHELDTLFAALPR 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  +   K   R P+   + P N   + I++  V + + +K       
Sbjct: 179 KRQTLLFSATFSDEIRSLAKGRLRDPLSIEVAPRNSTVKAIKQWVVPVDKKRKTELFLFM 238

Query: 492 IEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            +++K          R  V+   +           IHG      +   ++SFK G  ++L
Sbjct: 239 RKDRKWGQVLVFVKTRRGVDELVATLLAKKIKADAIHGDKPQPARLRALESFKAGEVQIL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+D+ D   ++  +        +H++ GR GR       I L     +    
Sbjct: 299 VATDVAARGLDIDDLPQVVNYDLPIVAEDYIHRI-GRTGRAGATGQAISLVCADEAPLLA 357

Query: 606 TRLSVLKNTED 616
              +++K T  
Sbjct: 358 AIETLIKQTLS 368


>gi|268565371|ref|XP_002639425.1| Hypothetical protein CBG04018 [Caenorhabditis briggsae]
 gi|187036206|emb|CAP24812.1| hypothetical protein CBG_04018 [Caenorhabditis briggsae AF16]
          Length = 393

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 131/341 (38%), Gaps = 40/341 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ AI  IL+          I Q   G+GKT    I++  +++      QA+I++
Sbjct: 49  KPSAIQQRAIPAILK------ARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILS 102

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 103 PTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQ----HVVSGTPGRVFD 158

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G +++L    +       V+L++AT     L +T
Sbjct: 159 MIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMT 218

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + ++R +              K   +    +   
Sbjct: 219 SKFMTDPIRILVKRDELTLEGIKQFFVAVDREE-------------WKFDTLIDLYDTLT 265

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            S+F  V +      +    +++ +HG M   D++ VM  F+ G  ++LI+T V   G+D
Sbjct: 266 SSSFLKV-DWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGNTRVLISTDVWARGLD 324

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   S++I  +  +     +H++ GR GR       I    
Sbjct: 325 VPQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVK 364


>gi|307705294|ref|ZP_07642156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
 gi|307621081|gb|EFO00156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
          Length = 520

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 134/363 (36%), Gaps = 34/363 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +   L L  +        DE    G        +++   +   LL +AT     + + + 
Sbjct: 135 KRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  KI  K    + +    I +   ++     +++  E  +   +  +       
Sbjct: 195 FMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFATMTRLMDVEQPELAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+ 
Sbjct: 249 --KRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    I    P          ++ K    G 
Sbjct: 307 GVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVSPNEMGYLQIIENLTKKRMKGL 365

Query: 619 LIA 621
             A
Sbjct: 366 KPA 368


>gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
 gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
          Length = 598

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/340 (22%), Positives = 130/340 (38%), Gaps = 35/340 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q   I  +L           + Q   G+GKT    + + A ++    G QA+++ 
Sbjct: 30  SPSAIQSMTIPPLLDGHD------LVGQAQTGTGKTAAFALPVLARLDTKAGGPQALVLT 83

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY + +    V  I G      + + L+R      HII+GT     
Sbjct: 84  PTRELAIQVAEAFQKYARYSKGFKVVPIYGGSDYRTQLRQLQR----GVHIIVGTPGRVM 139

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP--RTL 435
           D ++           L+L   DE  R G    ++    Q      + L +AT     R +
Sbjct: 140 DHMRRGSLDLSSLKTLVLDEADEMLRMGFIDDVEWILEQTPATRQIALFSATMPDAIRRI 199

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L       I  K      I+  +  +  + ++    +++ +E      I  +    
Sbjct: 200 AKTHLQSPQEITIKRKTVTNASIRQRVWIMAGVQKLDALTRILETEDYDGVIIFVRT--- 256

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                R   +           + A ++G ++   +E  +DSFK G   LL+AT V   G+
Sbjct: 257 -----RIATQELADKLAARGFATAALNGDIAQNQREKTVDSFKRGQLDLLVATDVAARGL 311

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           DV   S +I  +  +   A +H++ GR GR       IL 
Sbjct: 312 DVDRVSHVINYDIPNDPEAYIHRI-GRTGRAGRTGEAILF 350


>gi|161528690|ref|YP_001582516.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160339991|gb|ABX13078.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus
           SCM1]
          Length = 440

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 147/375 (39%), Gaps = 31/375 (8%)

Query: 266 LRNIPFSPT-KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGG 322
           L ++ F      QE+ I  +L           + Q   GSGKT    ++M   ++   G 
Sbjct: 17  LNDLGFEEAFPIQEAVIPVLLTGRDV------VGQAHTGSGKTAAFSLSMLQEIQPKNGI 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +IMAP   LA Q  + IKK+ + T I V  + G      +  ALER       I++ T
Sbjct: 71  QGLIMAPTRELAMQITDEIKKFGKYTGIKVATVYGGQGMGLQLDALER----GVEIVVAT 126

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL-VLTSLG 441
                D ++   + L  V           L +        +L +   P  R + + ++  
Sbjct: 127 PGRLIDHLKRGSIELRDVTHIVLDEADTMLDMGFIDDIGFILDL--APEDRVMSLFSATM 184

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
             +I +++E+     P + ++   +   E I++  +V+ +  K  ++   I+  K     
Sbjct: 185 PTEILRLSEEYLN-NPKQFLLDADDLSGEGIDQSYLVIKDRDKFKYLIDFIKPTKGQAIV 243

Query: 497 -ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             S      +    LH+    ++AI  G MS   +E  M  F++G   +L+AT V   GI
Sbjct: 244 FCSTKYRTRDVAKFLHQEKFDAVAI-EGDMSQHRREQSMGKFRSGKADILVATDVASRGI 302

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP----PLSKNSYTRLSVL 611
           DV    ++I  +  +  +A  H++ GR  R       +           +         +
Sbjct: 303 DVPRVELVINYDVPNQEMAYFHRI-GRTARAGAKGKAVTFVSYSSVGDWNLIKRQIKVPI 361

Query: 612 KNTED--GFLIAEED 624
           K+  +  G  IA  D
Sbjct: 362 KDLNEEMGIEIAIPD 376


>gi|138893877|ref|YP_001124330.1| DEAD-box ATP dependent DNA helicase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265390|gb|ABO65585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
           thermodenitrificans NG80-2]
          Length = 467

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 80/356 (22%), Positives = 141/356 (39%), Gaps = 35/356 (9%)

Query: 259 GKIAQKILRNIPFSPT-KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K   K +  + F  T   Q   I   LQ+         I Q   G+GKT    I +   
Sbjct: 10  SKEVMKAIERMGFEETTPIQAKTIPLSLQNKDV------IGQAQTGTGKTAAFGIPIVEK 63

Query: 318 VEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           V+      QA+++AP   LA Q  E + K     ++ V  I G      + +AL++    
Sbjct: 64  VDVKNGVIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKK---- 119

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVL 424
             H+I+GT     D I    L L  V        DE    G  + +   L    T    L
Sbjct: 120 HPHVIVGTPGRIIDHINRGTLRLEHVRTVVLDEADEMLNMGFIEDIEAILRHVPTERQTL 179

Query: 425 LMTAT-PIP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT P P R +    + D ++ K+  K      I+   + ++   +     +++  + 
Sbjct: 180 LFSATMPDPIRRIAERFMNDPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQA 239

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            +   +  + +       R V E   +L+    ++  I HG +S   + SV+  FK G+ 
Sbjct: 240 PELAIVFGRTK-------RRVDELAEALNLRGYAAEGI-HGDLSQAKRLSVLRKFKEGSI 291

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ++L+AT V   G+D+   + +   +      + +H++ GR GR  +    +    P
Sbjct: 292 EILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKTGVAMTFVTP 346


>gi|70995215|ref|XP_752371.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus Af293]
 gi|74672743|sp|Q4WT99|PRP5_ASPFU RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|66850006|gb|EAL90333.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus Af293]
          Length = 1211

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 85/434 (19%), Positives = 155/434 (35%), Gaps = 59/434 (13%)

Query: 265  ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----- 318
            +++ + +  PT  Q  AI  I+           I     GSGKT+  LI M   +     
Sbjct: 589  VIQKLGYENPTSIQSQAIPAIMSGRDV------IGVAKTGSGKTIAFLIPMFRHIRDQRP 642

Query: 319  ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                 G   +IM P   LA Q ++  K + +   +      G  P   +   L+R     
Sbjct: 643  LENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKR----G 698

Query: 376  AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            A I++ T     D +           ++  V++DE  R           K      ++  
Sbjct: 699  AEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMK------IMAN 752

Query: 428  ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              P  +T++ ++    ++  +  K    KPI+ V+   + +   I ++  V +E  K   
Sbjct: 753  IRPDRQTVLFSATFPRNMEALARKSLT-KPIEIVVGGKSVVAPEITQIVEVRNEDTKFVR 811

Query: 488  ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
            +   +         E+ +   F    E  ++L             IHG    ID++S ++
Sbjct: 812  LLEILGNLYSDDANEDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIE 871

Query: 536  SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             FK G   +LIAT+V   G+DV    +++  +A +     +H+  GR GR     + +  
Sbjct: 872  DFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 930

Query: 596  YHPPLSKNSYTRLSVLKNTEDGFLIA-----EED--LKQRKEGEILGIKQSGM--PKFLI 646
                  + S      L+    G  +        D  L++ K G+      SG        
Sbjct: 931  LTEEQERYSVDIAKALRQ--SGQKVPEPVQKMVDSFLEKVKAGK-EKASASGFGGKGLER 987

Query: 647  AQPELHDSLLEIAR 660
               E   + +   R
Sbjct: 988  LDQERDAARMRERR 1001


>gi|308322209|gb|ADO28242.1| eukaryotic initiation factor 4a-iii [Ictalurus furcatus]
          Length = 406

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    +++   ++      QA+I+A
Sbjct: 55  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFCVSVLQCLDIQVRETQALILA 108

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 109 PTRELAGQIQKVLLALGDFMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 164

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 165 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 224

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 225 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 277

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 278 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 337

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 338 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 396

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 397 EMPMNVADL 405


>gi|262172952|ref|ZP_06040629.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451]
 gi|261890310|gb|EEY36297.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451]
          Length = 464

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 128/344 (37%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G +       A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPRVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A +++ T  
Sbjct: 77  LILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQ---RMCKG-ADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRK-------ILKLLPEKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                  +   K     P++  + P N     +E+        KK   +   ++E     
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|167752757|ref|ZP_02424884.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216]
 gi|167659826|gb|EDS03956.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216]
          Length = 393

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 138/381 (36%), Gaps = 54/381 (14%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + +   I + I      +PT  Q+  I   L        ML I Q   G+GKT    I +
Sbjct: 8   LKITDPILKAIGEKGYLAPTPIQQKGIPVALDG----RDMLGIAQ--TGTGKTAAFAIPI 61

Query: 315 AAAVEAGGQA--------------------------VIMAPIGILAQQHYEFIKKYTQNT 348
              + +G QA                          +I+ P   LA Q  +    Y +  
Sbjct: 62  LQHLSSGMQAEPTDVPRRNRRGRNHGREYGVRPIRALILTPTRELAVQIGDSFSDYGKYV 121

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQ 403
            +    I G + Q  + +AL     G   I+I T     D      ++   +   ++DE 
Sbjct: 122 GLKHLTIFGGVKQGPQVEALR----GGVDILIATPGRLHDLIGQRFVELDAITHFVLDEA 177

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            R      +   +       LL       +TL  ++    DI  ++ K     P++  + 
Sbjct: 178 DRMLDMGFVADIK------RLLPLLPKSRQTLFFSATMPADIVALS-KSMLTDPVRVEVT 230

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSI 518
           P+    + I++    + + +K   +   + E+ +S       +   +  + L        
Sbjct: 231 PVASAVDAIDQRVYFVEKPEKKKLLVSLLREEDKSVLVFSRTKHGADNISRLLSKSGIRS 290

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG  S   ++ V+  FK+G  ++++AT +   GID+ +  I+I  +        +H+
Sbjct: 291 EAIHGNKSQNHRQRVLTDFKSGKIRVMVATDIAARGIDIRELEIVINYDLPDVPETYVHR 350

Query: 579 LRGRVGRGEEISSCILLYHPP 599
           + GR GR     + +    P 
Sbjct: 351 I-GRTGRAGHSGTALTFCTPD 370


>gi|162451888|ref|YP_001614255.1| hypothetical protein sce3615 [Sorangium cellulosum 'So ce 56']
 gi|161162470|emb|CAN93775.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 812

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 84/418 (20%), Positives = 155/418 (37%), Gaps = 52/418 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIMA 328
           PT  Q +  + + +          ++Q   G+GKT    + +         A  Q + + 
Sbjct: 51  PTPVQLAVWEPVTRGRD------AVVQARTGTGKTAAFGLPIVDHAVKRSLAQAQVLALC 104

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +++  +   I V  + G  P   +  AL       A +I+GT     D
Sbjct: 105 PTRELALQVSAEVERLGKRKGIKVVAVYGGAPMQRQIDALAA----GAQVIVGTPGRVLD 160

Query: 389 SIQYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT--PIPRTLV 436
            ++           L+L   DE    G ++ L   L +       LL +AT  P    + 
Sbjct: 161 HLRRGTIVAKHIRLLVLDECDEMLSMGFERELTAILAELPPERQTLLFSATLPPDIERIA 220

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + L   +   ++    G   I+  +  I  +++  ++  ++V   E   A   C   +E
Sbjct: 221 RSKLRSPEFITLSGDAVGALQIQHYVYLITGDKLTSLVRIIEVENPEN--AVIFCNTKDE 278

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            +        + +++           ++G +   D+E VM + + G  + L+AT V   G
Sbjct: 279 TEAVAGALKRQGYDA---------DWLNGDLPQSDREKVMSATREGRLRFLVATDVAARG 329

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY--TRLSVLK 612
           ID+   + +I  +      A +H+  GR GR     + I L  P      Y       ++
Sbjct: 330 IDISHLTHVINYDFPQDAEAYVHR-TGRTGRAGRTGTAIALITPQDVGPLYILRLTYKIR 388

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQD 670
             E     +E +LK R E +++ +       FL       D  L      A+ +LT D
Sbjct: 389 PLEKQL-PSEGELKTRAEADLVAML---AEAFLSKGTHRDDLSL------ARRLLTHD 436


>gi|38233613|ref|NP_939380.1| DEAD-box helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199873|emb|CAE49539.1| DEAD-box helicase [Corynebacterium diphtheriae]
          Length = 680

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 143/370 (38%), Gaps = 40/370 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q   I  ++Q     + ++ + Q   G+GKT    + + + ++      QA+I+A
Sbjct: 89  TPSPIQAQTIPVLMQG----HDVMGLAQ--TGTGKTAAFALPILSRIDVKKRHPQALILA 142

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  + +  +   I  + I G      +   L R     A II+GT     
Sbjct: 143 PTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRR----GAQIIVGTPGRVI 198

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRTL 435
           D ++           L+L   DE    G Q+ +   L        V L +AT     R L
Sbjct: 199 DHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVALFSATMPNGIRRL 258

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               + D    ++  +      I    + +   +++    +++     +A  +  + + +
Sbjct: 259 SRDYMKDPHEIQVKSQTRTNTNITQRYLNVAHRNKLDALTRILEVTEFEAMIMFVRTKHE 318

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E       E    L     S+ AI +G ++   +E  +D  K+G   +L+AT V   G+
Sbjct: 319 TE-------EVAEKLRARGFSAAAI-NGDIAQAQRERTVDQLKDGRLDILVATDVAARGL 370

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   + +   +  +   + +H++ GR GR       IL   P   +      S+ + T 
Sbjct: 371 DVERITHVFNYDIPNDTESYVHRI-GRTGRAGRSGEAILFVTP---RERRMLRSIERATN 426

Query: 616 DGFLIAEEDL 625
               + E DL
Sbjct: 427 A--KLIEMDL 434


>gi|148379740|ref|YP_001254281.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. ATCC
           3502]
 gi|153931372|ref|YP_001384037.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. ATCC
           19397]
 gi|153936334|ref|YP_001387579.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. Hall]
 gi|148289224|emb|CAL83319.1| ATP-dependent RNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927416|gb|ABS32916.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A str. ATCC
           19397]
 gi|152932248|gb|ABS37747.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A str. Hall]
          Length = 481

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 136/364 (37%), Gaps = 35/364 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  P++ Q+  I  IL+D         I++ + GSGKT    I +   +E     
Sbjct: 19  LGKLGYKNPSEVQKQVIPLILKDKD------IIVKSETGSGKTAAFSIPICEKLELEEKD 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++ P   LA Q  E I       ++    I G  P + +++ L++    + H+++G
Sbjct: 73  PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELKQ----RVHLVVG 128

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L        +L   DE    G   Q   + ++     V ++ +  IP
Sbjct: 129 TPGRTLDHIERENLNLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVTMLFSATIP 188

Query: 433 R---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L    + + +   I  +      I      +   D+     K++  E      I 
Sbjct: 189 EKVENLCKKYMNNPENININPENITTGTINQCYYEVEDKDKFYLLQKIIYKEVVDNSIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
               EK +       E    + +   ++I + HG M   D+   M  FK G  + L+ T 
Sbjct: 249 CNTREKVD-------EVLKHMKKKGLNAIGL-HGGMEQKDRLETMKKFKEGEFQFLVCTD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GI + + S +I     +   + +H++ GR GR  +    I    P   +       
Sbjct: 301 VAARGIHIENISHVINYEMPYEKESYVHRI-GRTGRAGKEGVAITFIEPNKVRFLKDIED 359

Query: 610 VLKN 613
            ++ 
Sbjct: 360 YIEK 363


>gi|116493289|ref|YP_805024.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC
           25745]
 gi|116103439|gb|ABJ68582.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC
           25745]
          Length = 526

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 133/364 (36%), Gaps = 36/364 (9%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                + ++  I + +L N    PT  Q   I  +L+          I Q   G+GKT  
Sbjct: 1   MKFTELGLDEDILKAVLDNGYDEPTPIQAETIPGVLEGKD------IIGQAQTGTGKTAA 54

Query: 310 ALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
             + +   V+      QA+I++P   LA Q    I K  +  +  V+++ G      +  
Sbjct: 55  FGLPILQNVDLDNPNIQAIIISPTRELAAQTQAEIFKLGKYKKAKVQVVYGGSDIRRQIN 114

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAP 421
           AL+        I++GT     D I    + L  V     DE         L   +     
Sbjct: 115 ALKS----HPQIVVGTPGRLLDHIGRKTIRLDHVKTLVLDEADDMLDMGFLPDIEH---- 166

Query: 422 HVLLMTATP-IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              ++  TP   +TL+ ++     I KI  K        TV       D V      V S
Sbjct: 167 ---IIEQTPSERQTLLFSATMPAPIKKIGVKFMTDPKQITVKSKELTADLV--DQYYVRS 221

Query: 481 EGKKAYWICPQIEEKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           +  + + I  ++ + +           +  V+  +        + A IHG ++   + S+
Sbjct: 222 KEFEKFDILTRVLDVQAPKLAVIFGRTKRRVDEVSKGLVTRGYNAAGIHGDLTQQRRMSI 281

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F+ G   +L+AT V   G+D+   + +   +      + +H++ GR GR     + +
Sbjct: 282 LRQFREGQLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGATGTSV 340

Query: 594 LLYH 597
               
Sbjct: 341 TFVT 344


>gi|310822103|ref|YP_003954461.1| RNA helicase dead [Stigmatella aurantiaca DW4/3-1]
 gi|309395175|gb|ADO72634.1| RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
          Length = 621

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/356 (19%), Positives = 127/356 (35%), Gaps = 43/356 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + +  PT  Q +A+  +L+          +     G+GKT    + +   +  G   
Sbjct: 64  LSALGYEEPTPIQRAALPPLLEGKD------LLGIAATGTGKTAAFSLPLLQRITPGAHA 117

Query: 323 ----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A+++ P   LA Q  E I +Y Q   I V  + G    + + + L+R       +
Sbjct: 118 PFTASALVLVPTRELAMQVAEAIHRYGQKLGISVVPLYGGQVISQQLRVLKR----GVDV 173

Query: 379 IIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTA 428
           ++ T     D +Q   L L  V        DE    G  + L   L+         L +A
Sbjct: 174 VVATPGRALDHLQRKTLKLEQVRVVVLDEADEMLDMGFAEDLEAILSSTPEKRQTALFSA 233

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T  PR   +      +  ++         I    +    +  V +    ++    K   +
Sbjct: 234 TLPPRIASIAERHLREPVRVR--------IAREKVESGELPRVRQT-AYIVPRAFKVATL 284

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              ++ +           R+ V+               +HG MS   ++ V+   K+ + 
Sbjct: 285 SRVLDVEAPTAAIVFCRTRTEVDELTLSLNGHGWRAHALHGGMSQEQRDRVIKQLKSHSA 344

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            LL+AT V   G+D+   S ++  +  +   A +H++ GR GR       I L  P
Sbjct: 345 DLLVATDVAARGLDISRLSHVVNFDVPNAPEAYVHRI-GRTGRAGREGVAITLVEP 399


>gi|241737496|ref|XP_002414033.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215507887|gb|EEC17341.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 402

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 135/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ +IK +++          I Q   G+GKT    I +   ++      QA+I++
Sbjct: 51  KPSAIQQRSIKPVIKGRDV------IAQAQSGTGKTATFSIGVLQTIDTQMRETQALILS 104

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        +      G        + L+       HI+ GT     D
Sbjct: 105 PTRELAGQIQKVILALGDYMNVQCHSCIGGTNLGEDIRKLDYGQ----HIVSGTPGRVFD 160

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++            V+L++AT     L +T
Sbjct: 161 MIKRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPCTQVVLISATLPHEILEMT 220

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 221 SKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 273

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+  +        +++ +HG M   +++++M  F++G+ ++LI T +   GID
Sbjct: 274 FCNTKRKVDWLSEKMREANFTVSSMHGDMPQKERDAIMKEFRSGSSRVLITTDIWARGID 333

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S++I  +  +     +H++ GR GR       I        +             D
Sbjct: 334 VQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKNDDIRILRDIEQYYSTQID 392

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 393 EMPMNVADL 401


>gi|213511116|ref|NP_001134430.1| eukaryotic initiation factor 4A-III [Salmo salar]
 gi|251764756|sp|B5DG42|IF4A3_SALSA RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|197631985|gb|ACH70716.1| eukaryotic translation initiation factor 4A isoform 3 [Salmo salar]
 gi|209733202|gb|ACI67470.1| Eukaryotic initiation factor 4A-III [Salmo salar]
          Length = 406

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 135/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    +++   ++      QA+I+A
Sbjct: 55  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFCVSVLQCLDIQVRETQALILA 108

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 109 PTRELAGQIQKVLLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 164

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V L++AT     L +T
Sbjct: 165 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMT 224

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 225 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 277

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 278 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 337

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 338 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 396

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 397 EMPMNVADL 405


>gi|194857377|ref|XP_001968940.1| GG25145 [Drosophila erecta]
 gi|190660807|gb|EDV57999.1| GG25145 [Drosophila erecta]
          Length = 512

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 63/376 (16%), Positives = 133/376 (35%), Gaps = 43/376 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------A 324
           PT  Q+ +I  I+           +     GSGKT   L+ + + +    Q        A
Sbjct: 116 PTPIQKVSIPVIVAGRD------LMACAQTGSGKTAAFLVPILSKLLDDPQDLEIGKPQA 169

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI++P   LA Q +   +K+   + + + I+ G     H+ + + +      H++I T  
Sbjct: 170 VIVSPTRELAIQIFSEARKFAFESYLKINIVYGGTSFKHQNECITK----GCHVLIATPG 225

Query: 385 LFQDSIQY--------YKLILVIVDEQHRFGV----QQRLKLTQKATAPHVLLMTATPIP 432
              D +            ++L   D     G     ++ +           L+ +AT   
Sbjct: 226 RLLDFVDRAFITFEDTRFVVLDEADRMLDMGFSESMRKFMTHPTMRPEHQTLMFSATFPE 285

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + L    L +     I         ++  I  +N+  +  + ++++  +         
Sbjct: 286 EIQRLAGEFLNNYVFVTIGVVGGACSDVQQTIYEVNKFAKRSKLMEILREQADGTIVFV- 344

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +   +   S           IHG      +E  +  FKNG+ K++IAT+V
Sbjct: 345 --------ETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRDFKNGSMKVIIATSV 396

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN-SYTRLS 609
              G+D+ + + ++  +  +     +H++ GR GR          + P   +  +   + 
Sbjct: 397 AARGLDIKNINHVVNFDMPNNIDDYVHRI-GRTGRVGNNGRATSFFDPDHDQALAGDLIK 455

Query: 610 VLKNTEDGFLIAEEDL 625
           +L+ +         DL
Sbjct: 456 ILEGSGQTVPEFLRDL 471


>gi|317030312|ref|XP_001392304.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Aspergillus
           niger CBS 513.88]
 gi|143359932|sp|A2QQA8|PRP5_ASPNC RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
          Length = 1180

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 85/438 (19%), Positives = 155/438 (35%), Gaps = 67/438 (15%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ++  + +   T  Q  AI  I+           I     GSGKT+  LI M   ++    
Sbjct: 561 VIDKLGYEKTTSIQAQAIPAIMSGRDV------IGVAKTGSGKTIAFLIPMFRHIKDQRP 614

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +IM P   LA Q ++  K + +   +      G  P   +   L+R     
Sbjct: 615 LDNMEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKR----G 670

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K      ++  
Sbjct: 671 AEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMK------IMAN 724

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K    KPI+ V+   + +   I ++  V ++ +K   
Sbjct: 725 IRPDRQTVLFSATFPRNMEALARKTLT-KPIEIVVGGKSVVAPEITQIVEVRNDDQKFVR 783

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  ++L             IHG    ID++S ++
Sbjct: 784 LLELLGNLYSSDENEDARALIFVDRQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIE 843

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    +++  +A +     +H+  GR GR     + +  
Sbjct: 844 DFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 902

Query: 596 YHPPLSKNSYTRLSVLKNTE-----------DGFLIAEEDLKQRKEGEILGIKQSGM--P 642
                 + S      LK +            D F      L++ K G+      SG    
Sbjct: 903 LTEDQERYSVDIAKALKQSGQKVPEPVQKLVDAF------LEKVKAGK-EKASASGFGGK 955

Query: 643 KFLIAQPELHDSLLEIAR 660
                  E   + +   R
Sbjct: 956 GLERLDQERDAARMRERR 973


>gi|32474767|ref|NP_867761.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
 gi|32445306|emb|CAD75308.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
          Length = 452

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 131/370 (35%), Gaps = 40/370 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-----GGQAVI 326
           +P+  Q + I   L           I Q   G+GKT    I +   +++       QA++
Sbjct: 66  TPSPIQAALIPHALNGKDV------IGQARTGTGKTAAFSIPILEQLDSLEDCRDPQAIV 119

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q     ++  +     + +++G      + + LE        +++GT    
Sbjct: 120 IVPTRELADQVAAEAERLARGVPTEIAVLSGGKNMNRQLRQLEN----GTQLVVGTPGRV 175

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            D +Q   L    V     DE  R                  ++       +TL+L++  
Sbjct: 176 HDHLQRGTLRTNNVWCVVLDEADRM------LDIGFRPQIERIMRKCPRNRQTLLLSATL 229

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
              + ++ E     +P+           + IE+    +++  K   +   ++ +K     
Sbjct: 230 PPVVRRLAESYM-HEPVVIDCCRDEMAVDTIEQRYFTIAQDDKVRLLESLLKREKPEQAI 288

Query: 497 --ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R        L   + S+   IHG +   +++ V+   ++G  K L+AT V+  G
Sbjct: 289 IFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKFLVATDVVGRG 348

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL-----SKNSYTRLS 609
           ID+   S I+  +        +H++ GR GR            P       S        
Sbjct: 349 IDISTISHIVNFDVPQDCDDYVHRV-GRTGRMGRDGVAYTFVVPGEGDILTSIEQRINKL 407

Query: 610 VLKNTEDGFL 619
           ++++  DGF 
Sbjct: 408 LIRDKMDGFE 417


>gi|260945385|ref|XP_002616990.1| hypothetical protein CLUG_02434 [Clavispora lusitaniae ATCC 42720]
 gi|238848844|gb|EEQ38308.1| hypothetical protein CLUG_02434 [Clavispora lusitaniae ATCC 42720]
          Length = 397

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 88/405 (21%), Positives = 147/405 (36%), Gaps = 42/405 (10%)

Query: 225 RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDI 284
           R   A  E  +     + +   F+     P  ++G  A          P+  Q  AI  I
Sbjct: 5   RSADAQIEFSSKSTKGVKVHATFESMKLKPELLKGIYAYGFEA-----PSAIQSRAIMQI 59

Query: 285 LQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFI 341
           +           I Q   G+GKT    I M  A++      QA++++P   LA Q +  I
Sbjct: 60  ISGRDT------IAQAQSGTGKTATFSIGMLQAIDWNVRQCQALVLSPTRELAIQIHNVI 113

Query: 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL------ 395
           +       I      G          L+++  GQ HI+ GT     D I+   L      
Sbjct: 114 RNLGTYMNIHTHACIGG---KQVGDDLKKLNQGQ-HIVSGTPGRVLDVIKRRNLATRNVQ 169

Query: 396 --ILVIVDEQHRFGVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
             IL   DE    G ++++    +   +   V++++AT     L +TS    D  KI  K
Sbjct: 170 MLILDEADELMTKGFKEQIYEIYRHLPSTVQVVVVSATLTREVLEITSKFTTDPVKILVK 229

Query: 452 --PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERF 507
                 + IK   I   + +   + L  +       +A   C           +S V   
Sbjct: 230 KEDVTLEGIKQYHIQCEKEEWKFDTLCDLYDSLTITQAVIFCNT---------KSKVNWL 280

Query: 508 NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN 567
                    +++ +HG M   +++S+M+ F+ G  ++LI+T V   GIDV   S++I  +
Sbjct: 281 ADQLRKANFAVSSMHGDMKQEERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYD 340

Query: 568 AEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
                   +H++ GR GR       I L                K
Sbjct: 341 LPLDKENYVHRI-GRSGRFGRKGVAINLITKDDVAEMKDLERYYK 384


>gi|125623238|ref|YP_001031721.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492046|emb|CAL96974.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069989|gb|ADJ59389.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 551

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 89/438 (20%), Positives = 157/438 (35%), Gaps = 67/438 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE  IK  L+          + Q   G+GKT    +     + A     QA+++A
Sbjct: 23  QPTPIQEETIKLALEGRDV------LGQAQTGTGKTAAFGLPTIEKINAENPAIQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ ++  + V  + G      + K L+      AHI++GT     D
Sbjct: 77  PTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLKA----GAHIVVGTPGRLVD 132

Query: 389 SIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+           LIL   DE    G  + +    + T  +          +TL+ ++ 
Sbjct: 133 LIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEN---------RQTLLFSAT 183

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---E 497
              DI KI  K   + P    I       + I++  V   E +K   +   ++ ++    
Sbjct: 184 MPADIKKIGVKFM-KNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLLDVERPELA 242

Query: 498 SNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F     R + L             +HG +    + +V+  FK G   +L+AT V   G
Sbjct: 243 IVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVATDVAARG 302

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH-------------PPLS 601
           +DV   + +   +      + +H++ GR GR  +    +                     
Sbjct: 303 LDVSGVTHVYNYDITQDQESYVHRI-GRTGRAGKSGRSVTFVSYNEMGYLRAIEKLTNKE 361

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                  +  +  +    +A +D+  R   +     +SG  K          SLLE  + 
Sbjct: 362 MKGLKPPTKEEAYQASLSVAMDDV-LRDLSD-----ESGKAKLAKFDK-QAASLLE--KF 412

Query: 662 DAKHILT-------QDPD 672
           DAK ++        +DPD
Sbjct: 413 DAKELVALLLQGRVKDPD 430


>gi|58697110|ref|ZP_00372550.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58698416|ref|ZP_00373327.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630895|ref|YP_002727686.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
           wRi]
 gi|58535071|gb|EAL59159.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58536598|gb|EAL59931.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592876|gb|ACN95895.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
           wRi]
          Length = 402

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 78/343 (22%), Positives = 139/343 (40%), Gaps = 34/343 (9%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIM 327
           F PT  Q  AI   LQ          +     G+GKTL   I + A +      G A+++
Sbjct: 17  FVPTPIQIQAIPLALQGKD------ILGSAQTGTGKTLAFAIPLVAKLLNEPNTGSALVI 70

Query: 328 APIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P   LA Q    I+K   QN+ + V ++ G  P   +   L++    +  I+IGT    
Sbjct: 71  VPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLNQLQK----KPQIVIGTPGRI 126

Query: 387 QDSIQYYKLI-----LVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLTSL 440
            D I+   LI     ++++DE  R          ++       +M   P I +TL+ ++ 
Sbjct: 127 IDHIERKTLITRNVSVLVLDETDRMFDMGFGVQIEE-------IMKHLPKIRQTLMFSAT 179

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
              DI K+ EK    +P +  +         I++  V  SE +K   +  Q+ +++    
Sbjct: 180 LPGDIVKLAEKYLN-RPERISVDCEVTTSVKIKQEIVYASESEKYEKLVTQLCQREGSII 238

Query: 497 -ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   ++          S   IHG +    +E V++SF+ G  ++++AT V   G+
Sbjct: 239 IFVKTKRGADQLAHRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVASRGL 298

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           D+     +I  +A       +H++ GR  R       +    P
Sbjct: 299 DIPHIQHVINYDAPQSQADYIHRI-GRTARAGAEGYALSFVTP 340


>gi|301154834|emb|CBW14297.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 616

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 159/437 (36%), Gaps = 49/437 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
            ++ F  P+  Q++ I  +L+          +     GSGKT    + + A ++      
Sbjct: 21  SDLGFETPSPIQQACIPALLEGRDV------LGMAQTGSGKTAAFSLPILAKIDPAAKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  + + +    I +  + G      R     R     A +++G
Sbjct: 75  QLLVMAPTRELAIQVADACEHFMKYAKGINIVTLYGG----QRYDIQLRALKQGAQVVVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I+   L        +L   DE  R G    +           ++       +
Sbjct: 131 TPGRILDHIRRNTLDLSELKAIVLDEADEMLRMGFIDDV---------ETVMAELPEEHQ 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQI 492
           T + ++     I +IT++         + +  +   ++ +    V       A     ++
Sbjct: 182 TALFSATMPEPIRRITKRFMNNPQEVKIKVNNDNAPDIEQNCWYVQGFRKNDALLRFLEV 241

Query: 493 EEKKESNFRSVVER----FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           E+   +   +  +        L E      A ++G M+   +E  +D  +NG+  +++AT
Sbjct: 242 EDFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDIVVAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+   S+++  +      + +H++ GR GR       +L   P   +      
Sbjct: 302 DVAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIE 360

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGI-KQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            ++K   +   +           E+L   ++      +  Q E HD  LE+ R   + + 
Sbjct: 361 HLMKKPINEVELPNH--------EVLQACRRKKFQDKITKQLEHHD--LEMYRSLLEDLF 410

Query: 668 TQDPDLTSVRGQSIRIL 684
           T D D   +    + +L
Sbjct: 411 TADQDQEDIAAAMLMLL 427


>gi|268680741|ref|YP_003305172.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618772|gb|ACZ13137.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 583

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 135/344 (39%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q  AI  +LQ          + Q   G+GKT    +   + ++A     Q +++ 
Sbjct: 24  EPSPVQAEAIPLVLQGHD------IVAQAQTGTGKTAAFGLPTMSMIDANQNRVQLLVIT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +    +   I    I G    + +   +E+     A +I+ T     D
Sbjct: 78  PTRELATQVSDELYSLGRFCGIKTVTIYGGSSYSRQIGLIEK----GASVIVATPGRMLD 133

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            ++  +L        +L   DE    G  + ++                   +TL+ ++ 
Sbjct: 134 LLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPKE---------RQTLLFSAT 184

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I ++  K        ++    +  +E IE+L  V++E ++   +   ++  +    
Sbjct: 185 MPEPIKRLASKILHEPKFVSITPKDHTTNEDIEQLYYVINEYERDDAMIRLLDALEPEKS 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+R ++       +   +HG M    +ESV+ +F++   ++L+AT V   G
Sbjct: 245 IVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ++V D S +   +      + +H++ GR GR  +  + I L  P
Sbjct: 305 LNVADISHVFNYHMPFDPESYVHRI-GRTGRAGKKGTAITLVTP 347


>gi|90414421|ref|ZP_01222398.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           3TCK]
 gi|90324534|gb|EAS41090.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           3TCK]
          Length = 464

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 137/360 (38%), Gaps = 36/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  +++          +     G+GKT    + +   +  G +       A
Sbjct: 23  TPSPIQAQAIPAVIEGKDV------MAAAQTGTGKTAGFTLPVLERLSNGPRVKPNQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +  Y +N  +   ++ G +    +   L +     A +++ T  
Sbjct: 77  LVLTPTRELAAQVAESVALYAKNLPLSSAVVFGGVKINPQMMRLRQ----GADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       L+   P  R  +L S
Sbjct: 133 RLLDLYNQRAVRFDQLEVLVLDEADRMLDMGFIRDIRK-------LLAVMPKQRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               D  +   K     P++  + P N     +++    + + +KA  +   ++E     
Sbjct: 186 ATFSDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPVDKSRKANLLTKLLKENNWGQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               +  +    R  +  E      A IHG  S   +   + +FK+   ++L+AT +   
Sbjct: 246 VLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEIQVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++     H     +H++ GR GR       I L      K+      ++K 
Sbjct: 306 GLDIEQLPQVVNFELPHVAEDYVHRI-GRTGRAGCEGQAISLVCADEYKDLAAIERLIKQ 364


>gi|331269837|ref|YP_004396329.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           botulinum BKT015925]
 gi|329126387|gb|AEB76332.1| DEAD/DEAH box helicase domain protein [Clostridium botulinum
           BKT015925]
          Length = 370

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 130/358 (36%), Gaps = 34/358 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  QE +IK + +          I +   G+GKT   L+ M   +       Q +I+ 
Sbjct: 23  TPTPIQEKSIKLVKE------ENDVIAEAQTGTGKTFAFLLPMFENMSPNINTVQGLIVT 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  +   + +    G    + + K L     G  H++I T     D
Sbjct: 77  PTRELAIQITEEANKLKKAKDLNILAAYGGKDISSQLKKL----KGNIHLVIATPGRLLD 132

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQR--LKLTQKATAPHVLLMTATPIPRT--LV 436
            I+           ++L   D+    G +      +   +    +L  +AT   +   L 
Sbjct: 133 HIKRNTINLQKLKTIVLDEADQMLYMGFKNEVEEIMKHTSKKKQILCFSATMNSQVKKLA 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              + +  I  I  +    K IK  ++      +     KV+  +      I  + + + 
Sbjct: 193 YRYMKEPKIVSIQSEEVTLKNIKQAVVETTDRRKQDALCKVLDEDNPFMAIIFCRTKRRV 252

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           ++   ++ ER          +   IHG ++   +E VM  FK    + LIAT V   G+D
Sbjct: 253 DNLEDALHER--------GYNCKKIHGDLNQAKRERVMKEFKKMDIQYLIATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +   + +   +      + +H++ GR GR  E     L   P   +        +K T
Sbjct: 305 ISGVTHVYSYDIPENAESYIHRI-GRTGRAGEEGETCLFIDPKDKRTLDIIEKEIKVT 361


>gi|149375720|ref|ZP_01893489.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
 gi|149360122|gb|EDM48577.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
          Length = 441

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 132/360 (36%), Gaps = 37/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------GGQAV 325
           +P+  Q  AI  +L           +     G+GKT    + +   +        G + +
Sbjct: 23  TPSPIQAKAIPAVLSGRDV------MAAAQTGTGKTAGFTLPLLQRLAENPRTGKGPRVL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+AP   LA Q ++ +  Y++       ++ G +    +   L +       +++ T   
Sbjct: 77  ILAPTRELAAQVHDSVALYSRYMPTKSAVVFGGVKINPQMMKLRK----GLDVLVATPGR 132

Query: 386 FQD-----SIQYYKLILVIVDEQHRFGV-----QQRLKLTQKATAPHVLLMTAT--PIPR 433
             D     ++++ ++ ++++DE  R          R  L         LL +AT     R
Sbjct: 133 LMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQNLLFSATFSNEIR 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL    L +    ++  +    + IK  + P+++  +     K+V   G +   +  +  
Sbjct: 193 TLAEGLLDNPVQVEVAARNTAAESIKQSVYPVDQSQKTALLSKLVRDNGWEQVLVFTRT- 251

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E    + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 252 -------KHGANRLTQKLERDGITAAAIHGNKSQGARTRALADFKQGEVRVLVATDIAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++     +     +H++ GR GR  E    + L      K       ++K 
Sbjct: 305 GLDIKQLPQVVNFELPNVPEDYVHRI-GRTGRAGESGHALSLVSADEGKMLAGIERLIKK 363


>gi|88856286|ref|ZP_01130945.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88814370|gb|EAR24233.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 638

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 131/346 (37%), Gaps = 41/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q + I  +L+          +     G+GKT    + + + ++   +  QA++++
Sbjct: 39  TPSAIQAATIPTLLEGRDV------VGLAQTGTGKTAAFALPILSRLDVSQSKPQALVLS 92

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY  +   + V  + G      +  AL R      H+++GT     
Sbjct: 93  PTRELALQVCEAFEKYATHMRGVHVLPVYGGQAYGVQLSALRR----GVHVVVGTPGRIM 148

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVL 437
           D +        +   L+L   DE  + G  + +   L        V L +AT   +   +
Sbjct: 149 DHLAKGTLDLSELKYLVLDEADEMLKMGFAEDVETILADTPEDKQVALFSATMPAQIRRI 208

Query: 438 TSLGDIDISKITEKPAGRKPIKT-----VIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +     D  +IT K        T     V+    ++D +   L+V   EG   +      
Sbjct: 209 SKKYLRDAEEITVKSQTTTSANTSQRYLVVSYPQKVDALTRILEVENFEGMIVFV----- 263

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +S  E           S A I G ++   +E  ++  K+G   +L+AT V  
Sbjct: 264 ------RTKSETENLAEKLRARGYSAAAISGDVAQAQRERTVNQLKSGKLDILVATDVAA 317

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G+DV   S ++  +      + +H++ GR GR     S I    P
Sbjct: 318 RGLDVDRISHVVNFDIPVDTESYVHRI-GRTGRAGRSGSAISFVTP 362


>gi|332162007|ref|YP_004298584.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666237|gb|ADZ42881.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 460

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 86/460 (18%), Positives = 176/460 (38%), Gaps = 60/460 (13%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + ++  T  Q +A+  IL     +       +   GSGKT    I +   +  G   
Sbjct: 19  LNELGYTEMTPVQAAALPAILNGQDVR------AKAKTGSGKTAAFGIGLLDKIAVGEFV 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  + TQ I +  + G  P  H+  +L        HI++
Sbjct: 73  TQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHA----PHIVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L+L  + +        R+       A   ++    P  +TL+ ++ 
Sbjct: 129 GTPGRIQEHLRKKTLVLDDL-KILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I +I+ +   R+P+   +   +     IE++    +  K+   +   +   +    
Sbjct: 188 YPAGIEQISAR-VQRQPVNVEVDDGDEAP-AIEQVFFETTREKRLPLLISVLSHYQPASC 245

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +      E    S+  +HG +   D++ V+  F N +C++L+AT V   G
Sbjct: 246 VVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN- 613
           +D+ D  +++           +H++ GR GR       + L  P     ++     L+  
Sbjct: 306 LDIKDLELVVNFELAFDPEVHVHRI-GRTGRAGMSGLAVSLCTPQEMTRAHAIEDYLQMK 364

Query: 614 ------------------------TEDGFLIAEEDLKQRKEGEILG--IKQSGMPKFLIA 647
                                     DG   A    K R  G+ILG    ++ +    + 
Sbjct: 365 LKWTPAEQVSRSANTMLEPEMVTLCIDGGRKA----KIR-PGDILGALTGEASLTAADVG 419

Query: 648 QPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           + ++    + + I +  AK  L Q      ++G++ +  L
Sbjct: 420 KIDMFPVHAYVAIRKASAKRALQQL-QQGKIKGKNCKARL 458


>gi|323706324|ref|ZP_08117890.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534376|gb|EGB24161.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 513

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 126/343 (36%), Gaps = 37/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQ-AVIMA 328
            P+K Q   I  +L+ +        I Q + G+GKTL     +        G    +++ 
Sbjct: 23  EPSKIQSEVIPVLLEGLDV------IGQAETGTGKTLAYGAPIINNFSSNDGKVFCLVLT 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + + +  + +++ +  + G +    + KA++R       I++GT     D
Sbjct: 77  PTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIKR----GVDIVVGTPGRVLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L L  V        DE    G    +K     T             +T++ ++ 
Sbjct: 133 LIKRNVLDLKSVRYLVIDEADEMMDMGFIDDIKEIINHTNKE---------RQTMMFSAT 183

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
              +I  + +K          I+        ++     +   ++   +C  ++ ++    
Sbjct: 184 MPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRILDVEEPSST 243

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+      +    ++  +HG MS   + + +  FK G    L+AT V   G
Sbjct: 244 IIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILDFLVATDVAARG 303

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ID+ + + +I  N      + +H++ GR GR         L  
Sbjct: 304 IDIENVTHVINYNLPQDVESYVHRI-GRTGRANRSGVAYTLVT 345


>gi|262164808|ref|ZP_06032546.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223]
 gi|262027188|gb|EEY45855.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223]
          Length = 464

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 128/344 (37%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G +       A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPRVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A +++ T  
Sbjct: 77  LILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQ---RMCKG-ADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     +I++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAIKFDQLEILVLDEADRMLDMGFIRDIRK-------ILKLLPEKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                  +   K     P++  + P N     +E+        KK   +   ++E     
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|170759986|ref|YP_001785987.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406975|gb|ACA55386.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 425

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 135/358 (37%), Gaps = 38/358 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------QA 324
           T  QE +I  IL           +     G+GKT    + +   +             +A
Sbjct: 25  TPIQEKSIPYILDGRD------LVGCAQTGTGKTAAFAVPVLQNLSKDKKVNKDPRTIRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  E  + Y +   +   +I G + Q  + KAL         I+I T  
Sbjct: 79  LVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKALRE----GVDILIATPG 134

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I    +   ++DE  R      +   +K      ++       + L+ ++
Sbjct: 135 RMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKK------IISKLPKARQNLLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
               +I+K+ +    + PI+  + P++   + I +    + + +K   +   +++K    
Sbjct: 189 TMPSEITKLVDS-IVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLLKDKSIES 247

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +     N + +    +      IHG  S   ++  +++FK G  ++L+AT +   
Sbjct: 248 ALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVATDIAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           GIDV + S +   N        +H++ GR GR       I       +K+      ++
Sbjct: 308 GIDVNELSHVFNYNLPDIPETYVHRI-GRTGRAGAKGVAISFCDIEETKSLKAIEKLI 364


>gi|134076811|emb|CAK39865.1| unnamed protein product [Aspergillus niger]
          Length = 1191

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 85/438 (19%), Positives = 155/438 (35%), Gaps = 67/438 (15%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ++  + +   T  Q  AI  I+           I     GSGKT+  LI M   ++    
Sbjct: 572 VIDKLGYEKTTSIQAQAIPAIMSGRDV------IGVAKTGSGKTIAFLIPMFRHIKDQRP 625

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +IM P   LA Q ++  K + +   +      G  P   +   L+R     
Sbjct: 626 LDNMEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKR----G 681

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K      ++  
Sbjct: 682 AEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMK------IMAN 735

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K    KPI+ V+   + +   I ++  V ++ +K   
Sbjct: 736 IRPDRQTVLFSATFPRNMEALARKTLT-KPIEIVVGGKSVVAPEITQIVEVRNDDQKFVR 794

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  ++L             IHG    ID++S ++
Sbjct: 795 LLELLGNLYSSDENEDARALIFVDRQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIE 854

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    +++  +A +     +H+  GR GR     + +  
Sbjct: 855 DFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 913

Query: 596 YHPPLSKNSYTRLSVLKNTE-----------DGFLIAEEDLKQRKEGEILGIKQSGM--P 642
                 + S      LK +            D F      L++ K G+      SG    
Sbjct: 914 LTEDQERYSVDIAKALKQSGQKVPEPVQKLVDAF------LEKVKAGK-EKASASGFGGK 966

Query: 643 KFLIAQPELHDSLLEIAR 660
                  E   + +   R
Sbjct: 967 GLERLDQERDAARMRERR 984


>gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 482

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/362 (19%), Positives = 127/362 (35%), Gaps = 30/362 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAKAIPVVLGGRDV------MGAAQTGTGKTASFSLPIIQRLLPLANTSASPARH 86

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    ++ Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q     L  V +        R+           +L       +TL+ ++ 
Sbjct: 143 ATPGRLLDHVQQKTANLGQV-QMLVLDEADRMLDMGFLPDLQRILNLLPTERQTLLFSAT 201

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
              +I K+      R P    +   N     + ++   ++EG K   +   I E+     
Sbjct: 202 FSPEIKKLASTYL-RNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQLIRERSLKQV 260

Query: 497 --ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +    R     E        IHG  S  ++   +D+FK G  + L+AT V   G
Sbjct: 261 IVFCNSKIGASRLARQLERDGVVATAIHGDRSQSERMQALDAFKRGEIEALVATDVAARG 320

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+ +   +I  +        +H++ GR GR       + L+ P   K       ++K  
Sbjct: 321 LDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLFSPNERKQLADIEKLIKRP 379

Query: 615 ED 616
            D
Sbjct: 380 LD 381


>gi|261400326|ref|ZP_05986451.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
           23970]
 gi|269209952|gb|EEZ76407.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
           23970]
          Length = 462

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 127/347 (36%), Gaps = 45/347 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L           +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPSALDGRD------IMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIET-------IVEATPSDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEK 495
           ++  D  + K+  K          +I + R+D+   IE   +   + +    +   I   
Sbjct: 188 SATWDGAVGKLARKLTKDP----EVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRD 243

Query: 496 KESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            + +        +++ E           +   +HG M    +   +   + G CK+L+AT
Sbjct: 244 ADIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|219686271|dbj|BAH08688.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Pagrus major]
          Length = 631

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/406 (17%), Positives = 138/406 (33%), Gaps = 57/406 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 218 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQQLMADGVAASSFSEL 271

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K+   T +   ++ G +   ++ + L R  +    ++
Sbjct: 272 QEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGYQIRELCRGCN----VL 327

Query: 380 IGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L      ++DE  R                    M +    +T
Sbjct: 328 CGTPGRLMDVIGRGKVGLSKLRYLVLDEADRMLDMGFEP--AMRRLVGSPGMPSKENRQT 385

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI ++         +   +  +      +E+  V +++  K   +   ++ 
Sbjct: 386 LMFSATYPDDIQRMGADFLKTDYLFLAVGVVGAACNDVEQTFVQVTKFSKREQLFDLLKT 445

Query: 495 ------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +           IHG     ++E  +  F++G C +++AT
Sbjct: 446 TGTERTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQRERELALADFRSGKCPVMVAT 505

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--------- 599
           +V   G+D+ D   ++  +        +H++ GR GR       +  Y P          
Sbjct: 506 SVAARGLDIPDVQHVVNFDLPKDIDEYVHRI-GRTGRCGNTGRAVSFYDPEADGQLARPL 564

Query: 600 ---LSKNSYTRLSVLKNT------EDGFLIAEEDL---KQRKEGEI 633
              LSK      S L+ +        GF  + +       RK G  
Sbjct: 565 VTILSKAQQEVPSWLEESALSGPGSSGFNPSRKTFASTDTRKGGSF 610


>gi|170701192|ref|ZP_02892163.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170133898|gb|EDT02255.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 542

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 134/376 (35%), Gaps = 43/376 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L           +     G+GKT    + +   +   G        +
Sbjct: 84  TPTPVQVKAIPAVLGGKDV------MAGAQTGTGKTAGFALPLLQRLVQHGPVVSSNRAR 137

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +    Y +   +      G +    +   L +       +++ T 
Sbjct: 138 VLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMKLRK----GVDVLVATP 193

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++Q+ ++  +++DE  R        L          +  A P+ R  +L 
Sbjct: 194 GRLLDLNRQNAVQFDQVETLVLDEADRM-------LDLGFARELNAVFAALPVQRQTLLF 246

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +       R P+   + P N     I++  V + +  K       + E    
Sbjct: 247 SATFTDDIRTMAASILRSPVNISVSPPNVTASKIKQWAVTVDKRNKPDLFMHLVAENNWD 306

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +       R+ VE   ++ +    ++  IHG      +   ++ FK G  ++L+AT V  
Sbjct: 307 HALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAA 366

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ D  ++I  +        +H++ GR GR       + L     +       +++ 
Sbjct: 367 RGLDIDDLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALIG 425

Query: 613 NT-----EDGFLIAEE 623
            T     E GF  AE 
Sbjct: 426 QTLRREEEPGFE-AEH 440


>gi|89075877|ref|ZP_01162256.1| putative ATP-dependent RNA helicase DbpA [Photobacterium sp. SKA34]
 gi|89048406|gb|EAR53983.1| putative ATP-dependent RNA helicase DbpA [Photobacterium sp. SKA34]
          Length = 461

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 168/448 (37%), Gaps = 58/448 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q  ++  IL+          I QG  GSGKT    + +   ++      Q +++ P 
Sbjct: 28  TPIQAQSLPLILEGKDV------IAQGKTGSGKTAAFGLGLLQNLKVKRFRVQTLVLCPT 81

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + I++  +    I V  + G  P   +  +LE      AHII+GT    ++ 
Sbjct: 82  RELADQVAKEIRRLARAIHNIKVLTLCGGTPFGPQIGSLEH----GAHIIVGTPGRVEEH 137

Query: 390 I--------QYYKLILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTS 439
           +        +   L+L   D     G Q  L        +    LL +AT   +   +  
Sbjct: 138 VRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAIIDVAPSDRQTLLFSATYPTQIASIAK 197

Query: 440 LGDIDISKIT-EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               +  ++  E       I      +   D+ +  ++++LS+ +    +         +
Sbjct: 198 RIMRNPVEVKVESNHDNSSISQHFYKVESNDDRLRAVRLLLSQHRPESCVI------FCN 251

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             R   E  + L ++  SSIA+ HG +   +++  +  F N +  +L+AT V   G+D+ 
Sbjct: 252 TKREAQEISDDLEDYGFSSIAL-HGDLEQRERDRTLVLFANKSRSILVATDVAARGLDID 310

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +   +I  +        +H++ GR GR         L+              L     G 
Sbjct: 311 NLDAVINYHLARDTEVHVHRI-GRTGRAGSKGIACSLFSDKEHYKVALLEDYLDRPISGE 369

Query: 619 LI-AEEDLKQ---R----------------KEGEILG--IKQSGMPKFLIAQPELHD--S 654
            + AE  L Q   R                + G+ILG    ++G+    + +  + D  +
Sbjct: 370 ALPAEHLLDQPTFRPEMVTLMIDGGKKQKVRPGDILGALTGENGIAGSDVGKINVFDFCA 429

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIR 682
            + + R+  +  L +  +   ++G++ R
Sbjct: 430 YVAVKREVVRAALKKLEN-GRIKGRNFR 456


>gi|301165769|emb|CBW25341.1| putative RNA helicase dead-box protein [Bacteriovorax marinus SJ]
          Length = 591

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 133/357 (37%), Gaps = 36/357 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SPT  QE AI  +L+          + Q   G+GKT    + + A +++     QA++++
Sbjct: 23  SPTDIQEKAIPLLLE-----KDTDFVGQAQTGTGKTAAFSLPLLAKIDSKSGDVQAIVLS 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E +K + +  +I +  + G +P   + + L+    G+  +++GT     D
Sbjct: 78  PTRELANQITEEMKSFCKYEKIKILSVYGGVPLDGQIRTLK---KGRPQVVVGTPGRVLD 134

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G    +           +L       +T + ++ 
Sbjct: 135 LIKRGVLKLENAKLAVLDEADEMLDMGFIDDV---------KTILSELGDKKKTWMYSAT 185

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
               I  + +     +P    I      +E IE+   ++  G     +C  ++   +   
Sbjct: 186 MPKAILSLIKSYLN-EPEVIKIEKKTLSNEDIEQKYFLIKRGNLGEAVCRILDSLTDYYG 244

Query: 501 RSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                       L + F         +HG MS   ++  M +FK    KLL+ T V   G
Sbjct: 245 IVFCRTKIDAKKLSDEFNYRGFPSDALHGDMSQTQRDLTMRAFKKKKVKLLVCTDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           IDV + + +I         + +H++ GR GR  +      +              ++
Sbjct: 305 IDVDNLTHVINYGLPQDLESYVHRI-GRTGRAGQKGCAYTVIDSSEKFRIRMLERLM 360


>gi|240172264|ref|ZP_04750923.1| cold-shock DEAD-box protein, DeaD [Mycobacterium kansasii ATCC
           12478]
          Length = 570

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 132/362 (36%), Gaps = 38/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q + I  ++           +     G+GKT    I + + ++      QA+I+A
Sbjct: 35  SPTAIQAATIPALMAG------SDVVGLAQTGTGKTAAFAIPILSKIDVTSTATQALILA 88

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y      + V  I G    A +   L R     A II+GT     
Sbjct: 89  PTRELALQVAEAFSRYGAYLPKLNVLPIYGGSSYAVQLAGLRR----GAQIIVGTPGRVI 144

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVL 437
           D ++   L        +L   DE    G  + +   L+       V L +AT  P    +
Sbjct: 145 DHLERGTLDLSRVDYLVLDEADEMLAMGFAEDVERILSDTPEYKQVALFSATMPPAIRKI 204

Query: 438 TSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           T+    D  ++T K   A  + I    I +    ++    +V+  E  +A  +  +    
Sbjct: 205 TTKYLHDPLEVTSKAKTATAENISQRYIQVAGPRKMDALTRVLEVEPFEAMIVFVRT--- 261

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT---CKLLIATTVIE 552
                +   E           S A I+G +    +E  + + + G      +L+AT V  
Sbjct: 262 -----KQATEEVAEKLRARGFSAAAINGDIPQQQRERTITALREGGPNGIDILVATDVAA 316

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   S ++  +  H   + +H++ GR GR     + +L   P             +
Sbjct: 317 RGLDVERISHVLNYDIPHDTESYVHRI-GRTGRAGRPGAALLFVSPRERHLLKAIEKATR 375

Query: 613 NT 614
            T
Sbjct: 376 QT 377


>gi|261365074|ref|ZP_05977957.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
           25996]
 gi|288566497|gb|EFC88057.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
           25996]
          Length = 457

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 127/347 (36%), Gaps = 45/347 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEGRD------IMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIET-------IVEATPTDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEK 495
           ++  D  + K+  K          ++ + R+D+   IE   +   + +    +   I   
Sbjct: 188 SATWDGAVGKLARKLTKNP----EVVEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRD 243

Query: 496 KESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +        +++ E           +   +HG M    +   +   + G CK+L+AT
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|206975837|ref|ZP_03236748.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|206745931|gb|EDZ57327.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
          Length = 481

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 79/363 (21%), Positives = 134/363 (36%), Gaps = 39/363 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           PT+ Q   I   LQ      +   +++   GSGKT    I +   VE      QA+++ P
Sbjct: 27  PTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTP 80

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I    +  +I    I G  P A ++  L++    + HI++GT     D 
Sbjct: 81  TRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDH 136

Query: 390 IQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTLVL 437
           I+           L++   DE    G   ++   + +  T    +L +AT       L  
Sbjct: 137 IEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTMLFSATLPEDVERLSR 196

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           T +      +I         I+  +      +++     V   E   +  I  + +E  +
Sbjct: 197 TYMNAPTHIEIKVAGITTDKIEHTLFEAIEDEKLSLLKDVTTIENPDSCIIFCRTQENVD 256

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             +R          +        IHG M   D+  VMD F+ G  + L+AT V   GID+
Sbjct: 257 HVYRQ--------LKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDI 308

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            + + +I  +      + +H+  GR GR       I    P  ++        +     G
Sbjct: 309 DNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENRFLEEIEEYI-----G 362

Query: 618 FLI 620
           F I
Sbjct: 363 FEI 365


>gi|148378643|ref|YP_001253184.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
           3502]
 gi|153933936|ref|YP_001383027.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
           19397]
 gi|153937665|ref|YP_001386574.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall]
 gi|148288127|emb|CAL82195.1| putative ATP-dependent RNA helicase rhle [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929980|gb|ABS35480.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
           19397]
 gi|152933579|gb|ABS39078.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall]
          Length = 425

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 135/358 (37%), Gaps = 38/358 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------QA 324
           T  QE +I  IL           +     G+GKT    + +   +             +A
Sbjct: 25  TPIQEKSIPYILDGRD------LVGCAQTGTGKTAAFAVPVLQNLSKDKKVNKNPRTIRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  E  + Y +   +   +I G + Q  + KAL         I+I T  
Sbjct: 79  LVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKALRE----GVDILIATPG 134

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I    +   ++DE  R      +   +K      ++       + L+ ++
Sbjct: 135 RMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKK------IISKLPKARQNLLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
               +I+K+ +    + PI+  + P++   + I +    + + +K   +   +++K    
Sbjct: 189 TMPSEITKLVDS-IVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLLKDKSIES 247

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +     N + +    +      IHG  S   ++  +++FK G  ++L+AT +   
Sbjct: 248 ALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVATDIAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           GIDV + S +   N        +H++ GR GR       I       +K+      ++
Sbjct: 308 GIDVNELSHVFNYNLPDIPETYVHRI-GRTGRAGAKGVAISFCDIEETKSLKAIEKLI 364


>gi|300122867|emb|CBK23874.2| unnamed protein product [Blastocystis hominis]
          Length = 394

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 137/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ AI  I++          I Q   G+GKT V  I +   ++      QA+I++
Sbjct: 18  KPSAIQQRAILPIIKGRDV------IAQSQSGTGKTGVFCIGVLQNIDPSLMETQALILS 71

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q  + +       ++      G    +   + L+        ++ GT     D
Sbjct: 72  PTRELAEQSQKVLLSIGDCMKVQCHACVGGKSLSDDIRRLDY----GVQVVSGTPGRVYD 127

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I    L    +        DE    G +++L    +    A  V+L++AT     L +T
Sbjct: 128 MINRRHLRTRNIKILVIDEGDEMLNQGFKEQLYDIYRYLPPATQVVLVSATMPKEVLDMT 187

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    +  KI  K      + IK   + + R +   + L  + +     +A   C     
Sbjct: 188 SKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYNNLTITQAVIFCNT--- 244

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R  VE   +       +++ +HG M   +++ +M+ F+ G  ++LIAT V   G
Sbjct: 245 ------RRKVEWLAAKLREANFTVSSMHGDMPQKERDRIMEEFRAGNSRVLIATDVWGRG 298

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S++I  +  +     +H++ GR GR       I                     
Sbjct: 299 LDVQQVSLVINYDLPNSRELYIHRI-GRSGRFGRKGVGINFVTNEDISVLRDIEQYYSTQ 357

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 358 IDEMPMNINDL 368


>gi|146319228|ref|YP_001198940.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33]
 gi|146321430|ref|YP_001201141.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33]
 gi|253752268|ref|YP_003025409.1| DEAD box helicase family protein [Streptococcus suis SC84]
 gi|253754094|ref|YP_003027235.1| DEAD box helicase family protein [Streptococcus suis P1/7]
 gi|253756028|ref|YP_003029168.1| DEAD box helicase family protein [Streptococcus suis BM407]
 gi|145690034|gb|ABP90540.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33]
 gi|145692236|gb|ABP92741.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33]
 gi|251816557|emb|CAZ52193.1| DEAD box helicase family protein [Streptococcus suis SC84]
 gi|251818492|emb|CAZ56321.1| DEAD box helicase family protein [Streptococcus suis BM407]
 gi|251820340|emb|CAR46890.1| DEAD box helicase family protein [Streptococcus suis P1/7]
 gi|319758658|gb|ADV70600.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
          Length = 514

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 127/344 (36%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA---VIMA 328
           +P+  QE  I   L+          I Q   G+GKT    +     ++   QA   +I+A
Sbjct: 23  TPSPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIDTNNQAIQSLIIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + K+ +   + V  + G      + KAL       AHI++GT     D
Sbjct: 77  PTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT---PIPRTL 435
            I+   L L  V        DE    G        + +   +   LL +AT   PI R +
Sbjct: 133 LIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQTLLFSATMPEPIKR-I 191

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +  + + +  KI  K      +    + +   ++     +++  +  +   +  +    
Sbjct: 192 GVKFMKEPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRLMDVDQPELSIVFGRT--- 248

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+
Sbjct: 249 -----KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGL 303

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           D+   + +   +      + +H++ GR GR  +    I    P 
Sbjct: 304 DISGVTHVYNYDIPQDPESYVHRI-GRTGRAGQSGQSITFVSPN 346


>gi|262273976|ref|ZP_06051788.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
 gi|262221786|gb|EEY73099.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
          Length = 441

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 122/350 (34%), Gaps = 41/350 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
           +PT  Q SAI  +            +     GSGKTL  L+     V        +G + 
Sbjct: 23  TPTDVQASAIPVVCAGKD------LLASSKTGSGKTLAFLLPALQRVMRSKAFSRSGPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           V++AP   L +Q Y  ++K    TQ    +I G      + K   +        I+ T  
Sbjct: 77  VVLAPTRELVKQVYGELRKLLAGTQFKGMLILGGENFNDQAKEFRK----NPAFIVATPG 132

Query: 385 LFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
              D +++  L        IL   D     G   +LK    A              +TL+
Sbjct: 133 RLADHLEHRHLSLEGLELLILDEADRMLDLGFAPQLKAINSAANHRR--------RQTLM 184

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++  D            + P +  I  +N   + IE+   +         +  ++ E++
Sbjct: 185 FSATLDHQQVNEIAADMLKDPKRVAIGFVNEEHKDIEQRFFLCDHLDHKQALLDRVMEQE 244

Query: 497 ESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      R+  +R  +           + G +S   +  +M+ F+ G  K+L+ T 
Sbjct: 245 SYQQVMIFTATRADTDRLATWFVERGIKAVALSGDLSQSARNRIMNEFERGLHKVLVTTD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   G+D+ + S ++  +        +H++ GR GR       I    P 
Sbjct: 305 VASRGLDISNVSHVVNFDMPKHAEEYVHRI-GRTGRAGNKGIAISFVGPK 353


>gi|261253372|ref|ZP_05945945.1| ATP-dependent RNA helicase RhlE [Vibrio orientalis CIP 102891]
 gi|260936763|gb|EEX92752.1| ATP-dependent RNA helicase RhlE [Vibrio orientalis CIP 102891]
          Length = 488

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 138/360 (38%), Gaps = 36/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  QE AI  +L           +     G+GKT    + +   ++ G +       A
Sbjct: 23  TPSPIQEQAIPAVLSGKDV------MAAAQTGTGKTAGFTLPILERLDNGQRVKGNHIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E + KY+++  +  +++ G +    +   L +       +++ T  
Sbjct: 77  LILTPTRELAAQVQENVFKYSRHQSLTSQVVFGGVKVNPQMLKLRK----GCDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R        +       +VL        + L+ ++
Sbjct: 133 RLLDLYQQNAVKFDQLEVLVLDEADRMLDMG--FIRDIRKILNVLPAK----RQNLLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               +I ++  K     P++  +   N     IE+      + KKA  +   I++     
Sbjct: 187 TFSAEIRELA-KGLVNDPVEVSVNKENSTAVTIEQSIYPADKRKKAPMLVKLIKDGNWKQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R          + A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 TLVFCRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRALADFKSGDVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     ++     H     +H++ GR GR  E+   I L     +   +    +++ 
Sbjct: 306 GIDIPQLPQVVNYELPHVSEDYVHRI-GRTGRAGEVGRAISLVEADEAGELFGIERLIQQ 364


>gi|209877927|ref|XP_002140405.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556011|gb|EEA06056.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 680

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 141/417 (33%), Gaps = 68/417 (16%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM-AAAVEAGGQ-------- 323
           PT  Q+ +I  +L           +     GSGKT   L  +    ++ G          
Sbjct: 221 PTPVQKFSIPTVLNGRD------LMACAQTGSGKTAAFLFPIIMRMLKDGPPPTPQQSSL 274

Query: 324 ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                    A++++P   LA Q YE  +K+   T I   ++ G    +  R  +  +  G
Sbjct: 275 RIKRVAYPVALVLSPTRELAIQIYEESRKFCYGTGIRTNVLYGG---SEIRNQILDLDRG 331

Query: 375 QAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAPHVL- 424
              I++ T    +D I   K        LIL   D     G   Q  ++ + +  PH L 
Sbjct: 332 S-DIVVATPGRLRDLIDRGKVYLKLIKFLILDEADRMLDMGFAPQIREIIEDSDMPHSLE 390

Query: 425 -----LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                + +AT     + L    L       +    A    I   ++      +    +K+
Sbjct: 391 GRQTVMFSATFPREIQQLAKDFLHSYIFLTVGRVGATSGSIVQRVVYAEEDHKPRLLVKL 450

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           ++ +G+    +            +   ++              IHG  S  ++E  +  F
Sbjct: 451 LMEQGEGLTVVFV--------EMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALRLF 502

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G   +L+AT V   G+D+ + + +I  +        +H++ GR GR           +
Sbjct: 503 RSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRI-GRTGRAGNTGLATSFVN 561

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ--------------RKEGEILGIKQSG 640
                     L+ L+ +        +D+ +              R  G   G ++SG
Sbjct: 562 ENNKPILRDLLAALEESGQDAPEWFQDMVKSCTASFGRYGNRFSRGGGSNSGTQRSG 618


>gi|307153172|ref|YP_003888556.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 7822]
 gi|306983400|gb|ADN15281.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7822]
          Length = 482

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 139/344 (40%), Gaps = 24/344 (6%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L +I F+ PT  Q+ AI  +L+          + Q   G+GKT    + +   ++     
Sbjct: 18  LESIGFTNPTDIQQKAIPLLLEGHDV------VGQSQTGTGKTAAYSLPLLERIDRHSRS 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LAQQ  + IK +  + ++ +  + G      + ++LER       I++G
Sbjct: 72  VQALILTPTRELAQQVAQAIKDFVDDRRLFILTVYGGQSIDRQIRSLER----GVQIVVG 127

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D ++  KL L  +         + L +        +L  T +   +T   ++  
Sbjct: 128 TPGRVIDLLERKKLSLDELQMAVLDEADEMLSMGFIDDVKKILQQTPST-RQTACFSATM 186

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-- 499
             +I ++ ++   + P+           E I++   ++  G         I E ++    
Sbjct: 187 PPEIKRLIDQFL-KSPVVVSATQHEATPERIDQHIYMVPRGWSKLKALQPILEIEDPESA 245

Query: 500 --FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F    +    L      S   +   HG +S   +E ++  F+ G  KL++AT +   G
Sbjct: 246 IIFVRTKQTATELTGKLQESGHHVDEYHGNLSQAQRERLVQRFREGKIKLVVATDIAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +DV D S +I  +        +H++ GR GR  +  + I L  P
Sbjct: 306 LDVEDLSHVINFDLPDNTETYIHRI-GRTGRAGKTGTAISLIEP 348


>gi|170782231|ref|YP_001710564.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156800|emb|CAQ01964.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 585

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 41/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q + I  +L           +     G+GKT    + + + ++      QA+++A
Sbjct: 39  TPSAIQAATIPSLLSGRDV------LGVAQTGTGKTAAFALPILSNLDVAQKTPQALVLA 92

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  ++Y      + V  + G      +  AL R      H+++GT     
Sbjct: 93  PTRELALQVCEAFERYASGMRGVHVLPVYGGQGYGVQLSALRR----GVHVVVGTPGRIM 148

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVL 437
           D +        Q   L+L   DE  + G  + +   L     +  + L +AT   +   +
Sbjct: 149 DHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILADTPKSKQIALFSATMPAQIRRI 208

Query: 438 TSLGDIDISKITEKPAGRKPIKT-----VIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +     D  +IT K        T     ++    ++D +   L+    EG   +      
Sbjct: 209 SGKYLQDPEEITVKNKTTTSANTTQRYLMVSYPQKVDALTRILETENFEGMIVFV----- 263

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   ++  E           + A I G ++   +E  ++  KNG   +L+AT V  
Sbjct: 264 ------RTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILVATDVAA 317

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G+DV   S ++  +      + +H++ GR GR     + I    P
Sbjct: 318 RGLDVDRISHVVNYDIPIDTESYVHRI-GRTGRAGRSGAAISFVTP 362


>gi|167035990|ref|YP_001671221.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida GB-1]
 gi|166862478|gb|ABZ00886.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 461

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 173/461 (37%), Gaps = 62/461 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + + S T  Q  ++  IL+          I Q   GSGKT    I +   +     G
Sbjct: 21  LDALGYASMTPIQAQSLPVILKGQD------LIAQAKTGSGKTAAFGIGLLNPINPRYFG 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    I +  + G +    +  +LE      AHII+
Sbjct: 75  CQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH----GAHIIV 130

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-T 434
           GT    Q  +    L+L      ++DE  R                   ++  TP  R T
Sbjct: 131 GTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIAS-------IIGKTPARRQT 183

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I ++          + V +     D  IE+  + +    +   +   +  
Sbjct: 184 LLFSATYPAGIKQLAADFMRNP--QQVKVESLHTDNQIEQRFIEIDPQHRLEAVTRVLGH 241

Query: 495 KKESNFRSVV---ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +  +  +     ++   +  H T+       +HG +   D++ V+  F N +  +L+AT
Sbjct: 242 YRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+    ++I           +H++ GR GR  E    + L  P     +    
Sbjct: 302 DVAARGLDIDGLDMVINVELARDAEIHVHRV-GRTGRAGEKGIAVSLVAPAEGHRAQAIE 360

Query: 609 SVLK-----------NTEDG---------FLIAEEDLKQRKEGEILG--IKQSGMPKFLI 646
            + K             + G           IA     + + G+ILG     +G+P   +
Sbjct: 361 DLQKSPLRWDSLDSLKNKGGEPLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQV 420

Query: 647 AQPELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            +  + D  + + + R  AK  + +  +   ++G+++++ +
Sbjct: 421 GKIAIFDFQAFVAVERALAKQAMQRL-NSGKIKGRALKVRI 460


>gi|94500946|ref|ZP_01307471.1| putative ATP-dependent RNA helicase DbpA [Oceanobacter sp. RED65]
 gi|94426886|gb|EAT11869.1| putative ATP-dependent RNA helicase DbpA [Oceanobacter sp. RED65]
          Length = 466

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 164/451 (36%), Gaps = 66/451 (14%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIG 331
             Q  ++  I++          I Q   GSGKT    + +   ++      Q +++ P  
Sbjct: 33  PIQAQSLPAIIEGKDV------IGQAKTGSGKTAAFALGLLHHLDVKRFRVQHLVLCPTR 86

Query: 332 ILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            LA Q  + I++  +    I V  + G MP   +  +LE      AHI++GT    ++ I
Sbjct: 87  ELADQVAKEIRQLARAIHNIKVLTLCGGMPFGPQVGSLEH----GAHIVVGTPGRIEEHI 142

Query: 391 QYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           +   L        +L   D     G Q  L+    A              +TL+ ++   
Sbjct: 143 RKNNLPLKDITGFVLDEADRMLDMGFQDSLESIVNALPKQ---------RQTLLFSATYP 193

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------ 496
            +I K+       KP++  +   +   ++ +    +    ++   +   ++++K      
Sbjct: 194 ENIEKLAA-WVTNKPVRVEVQESDVHSQIKQLFYRLQDNKQRMTALSLLLKKEKPESSIV 252

Query: 497 -ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  R   E  + L     S++A+ HG +    ++  +  F N +  +++AT V   G+
Sbjct: 253 FCNTKREAQEIADELRSQGFSAVAL-HGDLEQRQRDQTLVRFANKSASIMVATDVAARGL 311

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK------------- 602
           D+     +   +        +H++ GR GRG++       Y                   
Sbjct: 312 DIESVDAVFNYHLARDPEVHVHRV-GRTGRGDKKGKAFSFYTDKEGYKLVALEETLSVDA 370

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLIAQPEL-- 651
            +          +  F      L+           G+ILG    ++G+    + +  +  
Sbjct: 371 TAQKLPDFSVLDKPAFKAPMATLQIDGGKKQKVRPGDILGALTGKNGIAGKQVGKISVLD 430

Query: 652 HDSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
           + + + + R  AK  L +  +   ++G+S R
Sbjct: 431 YCAYVAVERDAAKPALKKLSE-GKLKGRSFR 460


>gi|66810480|ref|XP_638950.1| hypothetical protein DDB_G0283661 [Dictyostelium discoideum AX4]
 gi|74897085|sp|Q54QS3|DDX3_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx3; AltName:
           Full=DEAD box protein 3
 gi|60467576|gb|EAL65597.1| hypothetical protein DDB_G0283661 [Dictyostelium discoideum AX4]
          Length = 712

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/396 (16%), Positives = 141/396 (35%), Gaps = 61/396 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+SA+  IL++         +     GSGKT   L  + + +   G         
Sbjct: 269 KPTPVQKSALPIILKNRD------LMACAQTGSGKTAAFLFPIISGILLDGAPEAPPAYK 322

Query: 323 ---------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                    +A+++AP   LAQQ ++   K++  + +   +I G     H+   L+R   
Sbjct: 323 PGVPRAACPRALVLAPTRELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDR--- 379

Query: 374 GQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRL------KLTQKAT 419
               I++ T     D +   +        L+L   D     G + ++             
Sbjct: 380 -GCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDMPGCR 438

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERL 475
               L+ +AT   +   L +    +   +     G     T     ++  ++   +++ L
Sbjct: 439 DRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGTTQNITQRIEYVVEEDKNSYLLDYL 498

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             + S+G    ++            +   +               IHG ++  ++E+ + 
Sbjct: 499 SGLKSDGLCLIFV----------ETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQ 548

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SF++     L+AT +   G+ + + +++I  +        +H++ GR GR  +    I  
Sbjct: 549 SFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRI-GRTGRAGKKGLAISF 607

Query: 596 YHPPLSKNSYTRLSVLKNTE----DGFLIAEEDLKQ 627
           ++          L ++K +     D F     +L+ 
Sbjct: 608 FNEKNKPVGAELLKLMKASNQDIPDWFEKMVHNLRM 643


>gi|331266806|ref|YP_004326436.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
 gi|326683478|emb|CBZ01096.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
          Length = 525

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 133/363 (36%), Gaps = 34/363 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +   L L  +        DE    G        +++       LL +AT     + + + 
Sbjct: 135 KRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  KI  K    + +    I +   ++     +++  E  +   +  +       
Sbjct: 195 FMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+ 
Sbjct: 249 --KRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    I    P          ++ K    G 
Sbjct: 307 GVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVSPNEMGYLQIIENLTKKRMKGL 365

Query: 619 LIA 621
             A
Sbjct: 366 KPA 368


>gi|308473123|ref|XP_003098787.1| CRE-VBH-1 protein [Caenorhabditis remanei]
 gi|308268083|gb|EFP12036.1| CRE-VBH-1 protein [Caenorhabditis remanei]
          Length = 686

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/378 (18%), Positives = 142/378 (37%), Gaps = 51/378 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ +I  +L +         +     GSGKT   L+ +   + AGG         
Sbjct: 191 KPTPVQKHSIPTLLANRD------LMSCAQTGSGKTAAFLLPIIQHIMAGGPEMIKTPAF 244

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                     A++++P   LA Q ++   K++  T +   I+ G     + R  + R+  
Sbjct: 245 TNGRRTYFPSALVLSPTRELAIQIHKEASKFSYKTNLQTAILYGGR--ENYRDQVNRLRS 302

Query: 374 GQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLT----QKATAP 421
           G AHI+I T     D I+           L+L   D     G + +++        A   
Sbjct: 303 G-AHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMPAKTA 361

Query: 422 HVLLMTATPIPRTLVL----TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
               M +   P+ + L        +     +    +  + I+  ++ +N +++  + L  
Sbjct: 362 RTTAMFSATFPKEIQLLAKDFLKENYVFLAVGRVGSTSENIEQRLLWVNEMEK-RQNLME 420

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           +L        +   +E K     R   E    L+     S++I HG +  I++E  ++ F
Sbjct: 421 ILMNEDSTNLVLVFVETK-----RGANELAYFLNRQQIRSVSI-HGDLKQIERERNLEMF 474

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++
Sbjct: 475 RSGQFPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRI-GRTGRCGNLGIATSFFN 533

Query: 598 PPLSKNSYTRLSVLKNTE 615
                      +++    
Sbjct: 534 DKNRGIGRDLKNLILEAN 551


>gi|282860072|ref|ZP_06269153.1| ATP-dependent RNA helicase DeaD family protein [Prevotella bivia
           JCVIHMP010]
 gi|282587160|gb|EFB92384.1| ATP-dependent RNA helicase DeaD family protein [Prevotella bivia
           JCVIHMP010]
          Length = 589

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 136/361 (37%), Gaps = 38/361 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I  IL+          +     G+GKT   L+ + + +  GG        +IM
Sbjct: 25  TPVQEQCIPHILKGKD------ILAVAQTGTGKTAAYLLPILSKLADGGYPEDAINCLIM 78

Query: 328 APIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +P   LAQQ  + ++ ++     +    + G        + ++ +A G A +II T   F
Sbjct: 79  SPTRELAQQIDQGMQGFSYYLNGVSCVAVYGGNDGNRYDQEIKSLALG-ADVIIATPGRF 137

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPI--PRT 434
              I    +        +L   D     G  + +K   K   +    ++ +AT       
Sbjct: 138 ISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKTIAKKLPSTCQTIMFSATMPSKIED 197

Query: 435 LVLTSLGDIDISKIT-EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           L  T L + ++ K+   KPA +      +    +  E+I+ +       +   +      
Sbjct: 198 LAKTLLKEPEMVKLAVSKPAEKIQQSAYVCYETQKIEIIKDIFKAGDLHRVIIF------ 251

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               S  +  V++  S       +   +H  +    ++ VM  FK+G   +L+AT ++  
Sbjct: 252 ----SGSKQKVKQIASSLNRKHINCGEMHSDLDQAQRDDVMFKFKSGQIDVLVATDIVAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+ D +++I  +  H     +H++ GR  R +     I   +           S L+ 
Sbjct: 308 GIDIDDITMVINYDVPHDVEDYVHRI-GRTARADRDGVAITFVNGDDIYYFQQIESFLEK 366

Query: 614 T 614
           T
Sbjct: 367 T 367


>gi|50291147|ref|XP_448006.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661189|sp|Q6FP38|DBP1_CANGA RecName: Full=ATP-dependent RNA helicase DBP1
 gi|49527317|emb|CAG60957.1| unnamed protein product [Candida glabrata]
          Length = 604

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 61/373 (16%), Positives = 138/373 (36%), Gaps = 43/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ +I  + ++         +     GSGKT   L  + + +             
Sbjct: 160 KPTPVQKYSIPIVTKNRD------LMACAQTGSGKTGGFLFPVLSELFLNGPAPLPEHTR 213

Query: 319 -----EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                +    A+++AP   LA Q ++  KKYT  + +   ++ G  P   + + ++R  +
Sbjct: 214 HSYMRKCYPSALVLAPTRELAIQIFDEAKKYTYRSWVKPYVVYGGAPIGQQMRDMDRGCN 273

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  K+ LV V     DE  R          Q         M +
Sbjct: 274 ----LLVATPGRLNDLLERGKISLVNVKYLVLDEADRMLDMGFEP--QIRHIVEDCDMPS 327

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++    +I  +  +   +  I   +  +    E I++  + + +  K   +
Sbjct: 328 VNDRQTLMFSATFPREIQHLA-RDFLKDYIFLSVGRVGSTSENIQQKVLFVEDYDKNSAL 386

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +  + +         + + ++              IHG  +  ++E  + +F+NG  
Sbjct: 387 LDILINEIDGLTLVFVETKRMADQLTDFLIVQNFKATAIHGDRTQAERERALHAFRNGIA 446

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ + + +I  +        +H++ GR GR   +      ++     
Sbjct: 447 NILVATAVAARGLDIPNVTNVINYDLPTDIDDYVHRI-GRTGRAGNVGVATSFFNSNSMN 505

Query: 603 NSYTRLSVLKNTE 615
            +   + +L    
Sbjct: 506 IAKELMDLLTEAN 518


>gi|311771467|dbj|BAJ25759.1| vasa [Pagrus major]
          Length = 631

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/406 (17%), Positives = 138/406 (33%), Gaps = 57/406 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 218 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQQLMADGVAASSFSEL 271

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K+   T +   ++ G +   ++ + L R  +    ++
Sbjct: 272 QEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGYQIRELCRGCN----VL 327

Query: 380 IGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L      ++DE  R                    M +    +T
Sbjct: 328 CGTPGRLMDVIGRGKVGLSKLRYLVLDEADRMLDMGFEP--AMRRLVGSPGMPSKENRQT 385

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI ++         +   +  +      +E+  V +++  K   +   ++ 
Sbjct: 386 LMFSATYPDDIQRMGADFLKTDYLFLAVGVVGAACNDVEQTFVQVTKFSKREQLLDLLKT 445

Query: 495 ------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +           IHG     ++E  +  F++G C +++AT
Sbjct: 446 TGTERTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQRERELALADFRSGKCPVMVAT 505

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--------- 599
           +V   G+D+ D   ++  +        +H++ GR GR       +  Y P          
Sbjct: 506 SVAARGLDIPDVQHVVNFDLPKDIDEYVHRI-GRTGRCGNTGRAVSFYDPEADGQLARPL 564

Query: 600 ---LSKNSYTRLSVLKNT------EDGFLIAEEDL---KQRKEGEI 633
              LSK      S L+ +        GF  + +       RK G  
Sbjct: 565 VTILSKAQQEVPSWLEESALSGPGSSGFNPSRKTFASTDTRKGGSF 610


>gi|300721544|ref|YP_003710819.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628036|emb|CBJ88585.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 649

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/402 (18%), Positives = 146/402 (36%), Gaps = 37/402 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I  +L           +     GSGKT    + +   + A     Q +++A
Sbjct: 29  KPSPIQQQCIPHLLNGRDV------LGMAQTGSGKTAAFTLPLLHNINAELKAPQILVLA 82

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E    ++++ + + V  + G      R     R       I++GT     
Sbjct: 83  PTRELAVQVAEACSDFSKHMRSVNVVALYGG----QRYDVQLRALRQGPQIVVGTPGRLL 138

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTL 435
           D ++           L+L   DE  R G  + +   ++Q        L +AT     R +
Sbjct: 139 DHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATMPEAIRRI 198

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               + D    +I      R  I      +  + +    ++ + +E   A  I  + +  
Sbjct: 199 TRRFMNDPQEVRIQSSVTNRPDISQSYWSVYGVRKNEALVRFLEAEDFDAAIIFVRTKN- 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                 + +E   +L  +  +S A+ +G M+   +E  ++  KNG   +LIAT V   G+
Sbjct: 258 ------ATLEVAEALERNGYNSAAL-NGDMNQTLREQTLERLKNGRLDILIATDVAARGL 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S+++  +      + +H++ GR GR       +L       +        +K T 
Sbjct: 311 DVERISLVVNYDIPMDAESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIERTMKLTI 369

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
               +   D +   +  +     +   +   +  + + +LL 
Sbjct: 370 PEVELP--DAELLGQRRLEKFAANVQQQLESSDLDQYRALLA 409


>gi|251812202|ref|ZP_04826675.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251804299|gb|EES56956.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
          Length = 528

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 140/372 (37%), Gaps = 36/372 (9%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +++   +    + +  K  Q +       PT  Q+ +I   L+          + Q   
Sbjct: 14  RKRRIILQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEG------DDILGQAQT 67

Query: 303 GSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           G+GKT    I +   V  + G Q++I+AP   LA Q  E ++++++  ++ V  + G MP
Sbjct: 68  GTGKTGAFGIPLIEKVVGQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMP 127

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL 412
              + KAL+R       I++GT     D +          + LIL   DE    G    +
Sbjct: 128 IERQIKALKR----GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDM 183

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           +                   +T++ ++     I ++ ++      I    +     D  I
Sbjct: 184 RFIMDKIPAEQ--------RQTMLFSATMPKAIQELVQQFMKAPKI-IKTMNNEMSDPQI 234

Query: 473 ERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++ E +K       ++  +      F     R + L     S       +HG ++
Sbjct: 235 DEYYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDIT 294

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              +  V+  FKN    +L+AT V   G+D+   S +   +      +  H++ GR GR 
Sbjct: 295 QAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRA 353

Query: 587 EEISSCILLYHP 598
            +    +   +P
Sbjct: 354 GKEGIAVTFVNP 365


>gi|212709939|ref|ZP_03318067.1| hypothetical protein PROVALCAL_00989 [Providencia alcalifaciens DSM
           30120]
 gi|212687451|gb|EEB46979.1| hypothetical protein PROVALCAL_00989 [Providencia alcalifaciens DSM
           30120]
          Length = 657

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 170/442 (38%), Gaps = 56/442 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q+  I  +L           +     GSGKT    + +   ++A    
Sbjct: 22  LSDLGYEKPSPIQQQCIPLLLDG------NDVLGMAQTGSGKTAAFSLPLLHNIDADLKA 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++  ++ V  + G      R     R       +++
Sbjct: 76  PQILVLAPTRELAVQVAEAMSDFSKHMNRVNVVALYGG----QRYDVQLRALRQGPQVVV 131

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++           L+L   DE  R G  + +   ++Q        L +AT 
Sbjct: 132 GTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATM 191

Query: 430 --PIPRTLVLTSLGDIDISK---ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             PI R          +I     IT +P   +   T +  + + + ++  L+    +   
Sbjct: 192 PEPIRRITRRFMKDPKEIRIQASITTRPDIAQSYWT-VYGMRKNEALVRFLEAEDFDAAI 250

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +               + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 251 IFV----------RTKNATLEVAETLERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 299

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 300 LIATDVAARGLDVERISLVVNYDIPMDAESYVHRI-GRTGRAGRAGRALLFVENRERRLL 358

Query: 605 YTRLSVLKNTEDGFLIAEEDL--KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
                 +K T     + + DL  ++R+      I+Q    +   +  + + SLL      
Sbjct: 359 RNVERTMKLTIPEVELPDADLLSQRRQAKFAEQIQQ----QLESSDLDQYRSLL------ 408

Query: 663 AKHILTQDPDLTSVRGQSIRIL 684
           AK   ++D D+ ++    +++ 
Sbjct: 409 AKMSPSEDVDMETLAAALLKMA 430


>gi|281490897|ref|YP_003352877.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281374655|gb|ADA64175.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
           lactis subsp. lactis KF147]
          Length = 547

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/361 (21%), Positives = 135/361 (37%), Gaps = 42/361 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE  IK  L+          + Q   G+GKT    +     ++A     QA+++A
Sbjct: 23  QPTPIQEQTIKLALEGRDV------LGQAQTGTGKTAAFGLPTIEKIDASNPAIQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ ++  + V  + G      + K L+      AHI++GT     D
Sbjct: 77  PTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLKA----GAHIVVGTPGRLVD 132

Query: 389 SIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+           LIL   DE    G  + +    + T             +TL+ ++ 
Sbjct: 133 LIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPE---------ARQTLLFSAT 183

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---E 497
              DI KI  K   + P    I       + I++  V   E +K   +   ++ ++    
Sbjct: 184 MPNDIKKIGVKFM-KNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLLDVERPELA 242

Query: 498 SNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F     R + L             +HG +    + +V+  FK G   +L+AT V   G
Sbjct: 243 IVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVATDVAARG 302

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   + +   +      + +H++ GR GR  +    +       S N    L  ++N 
Sbjct: 303 LDVSGVTHVYNYDITQDQESYVHRI-GRTGRAGKSGRSVTFV----SYNEMGYLRAIENM 357

Query: 615 E 615
            
Sbjct: 358 T 358


>gi|298489929|ref|YP_003720106.1| DEAD/DEAH box helicase domain-containing protein ['Nostoc azollae'
           0708]
 gi|298231847|gb|ADI62983.1| DEAD/DEAH box helicase domain protein ['Nostoc azollae' 0708]
          Length = 513

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 82/352 (23%), Positives = 135/352 (38%), Gaps = 38/352 (10%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG- 322
           IL  + F+ PT  Q  AI  +L           + Q   G+GKT    + M   ++    
Sbjct: 17  ILEKLSFTTPTNIQTQAIPQLLAGRDV------VGQSQTGTGKTAAFSLPMLEKLDVSKK 70

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             QAV++ P   LA Q ++ I ++  N  + V  I G      +   L+R      H+++
Sbjct: 71  AVQAVVLTPTRELAMQVHDAISQFMGNDGLRVLAIYGGQSIDRQMMQLKR----GVHVVV 126

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATP 430
           GT     D ++   L L  V        DE    G    +   L+Q  T     L +AT 
Sbjct: 127 GTPGRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIRILSQAPTERQTALFSATM 186

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTV--IIPINRIDEVIERLKVVLSEGKKAY 486
            P  R LV   L       + +  A    I  V  +IP +       +  + + + + A 
Sbjct: 187 PPSIRQLVNKFLNSPVTVTVEQPKAAPNKINQVAYLIPRHWTKAKALQPILEMEDPETAL 246

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                         R+  E  N L      S+   HG +S   +E ++  F+N   + ++
Sbjct: 247 IFVRT--------RRTAAELTNQLQAAGH-SVDEYHGDLSQQARERLLTRFRNRQVRWVV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT +   G+DV   S +I  +        +H++ GR GR  +  + I L  P
Sbjct: 298 ATDIAARGLDVDLLSHVINFDLPDSVETYVHRI-GRTGRAGKEGTAISLVQP 348


>gi|239617313|ref|YP_002940635.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF
           19.5.1]
 gi|239506144|gb|ACR79631.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF
           19.5.1]
          Length = 524

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 139/384 (36%), Gaps = 40/384 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            PT  Q  AI  IL           I Q   G+GKT    I +   ++      QA+I+ 
Sbjct: 25  EPTPIQSKAIPVILNGRD------IIGQAHTGTGKTAAFGIPLLEMLDYSSKKVQALILC 78

Query: 329 PIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q   E     +   +I V  I G      +   L++       +++GT     
Sbjct: 79  PTRELAVQVAREIAALASNRKEIEVLAIYGGQSIERQINTLKK----GIQVVVGTPGRIM 134

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++   L        +L   DE    G  + ++           L       +  + ++
Sbjct: 135 DHMRRKTLKLDDTKFVVLDEADEMLNMGFLEDIRYI---------LSHVGKERQITMFSA 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                I  + +    ++P    +I        +E+  + + E +K   +   IE      
Sbjct: 186 TMPKAIIALAQ-EFQKEPELIKVINRELTVSTVEQYYLEIGESRKFDALSKLIEYYNPQL 244

Query: 499 --NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +  ++ + L     +    +  +HG MS   +  VM+SF+N + K+L+AT V   
Sbjct: 245 SLVFCNTKKKVDELVPMLQAKGYLVDGLHGDMSQSLRNRVMNSFRNKSIKVLVATDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL-YHPPLSKNSYTRLSVLK 612
           GIDV D   +   +        +H++ GR GR  +        Y   L +    +     
Sbjct: 305 GIDVDDIEAVFNYDIPQDEEYYVHRI-GRTGRAGKTGKAFSFAYGRSLHRLREIQRYTKI 363

Query: 613 NTEDGFLIAEEDLKQRKEGEILGI 636
             +   + +E+D+  ++    LG 
Sbjct: 364 KIKSLNVPSEKDVNTKRMESFLGE 387


>gi|61563575|gb|AAX46760.1| putative DEAD-box family RNA helicase PL10 [Carassius auratus]
          Length = 582

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 130/371 (35%), Gaps = 51/371 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA------------MAAAVEA 320
           PT  Q+ AI  I      K +   +     GSGKT   L+                A++ 
Sbjct: 225 PTPVQKYAIPII------KTKRDLMACAQTGSGKTAAFLLPVLSQIFTEGPGEALQAMKN 278

Query: 321 GGQ-------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             Q             ++++AP   LA Q YE  +K    + +   ++ G      + + 
Sbjct: 279 SAQENGKYGRRKQYPISLVLAPTRELALQIYEEARKVAYRSHVRPCVVYGGADIGQQIRD 338

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPH 422
           LER      H+++ T     D ++  K+ L      ++DE  R          ++     
Sbjct: 339 LER----GCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQD 394

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
              M    + +T++ ++    +I  +  +    + I   +  +    E I +  V + E 
Sbjct: 395 T--MPPKGLRQTMMFSATFPKEIQILA-RDFLEEYIFLAVGRVGSTSENITQKVVWVEEN 451

Query: 483 KKAYWICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            K  ++   +               +   +           S   IHG  +  D+E  + 
Sbjct: 452 DKRSFLLDLLNATGKESLTLVFVETKKGADSLEDFLYREGYSCTSIHGDRTQRDREEALH 511

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G C +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      
Sbjct: 512 QFRSGRCPILVATAVAARGLDISNVKHVINFDLSSDIEEYVHRI-GRTGRVGNLGLATSF 570

Query: 596 YHPPLSKNSYT 606
           ++      +  
Sbjct: 571 FNDKNGNITKD 581


>gi|21244335|ref|NP_643917.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109989|gb|AAM38453.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 460

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 134/372 (36%), Gaps = 37/372 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q+ AI  +L           +     G+GKT    + +   +    Q        
Sbjct: 23  TPTPIQQQAIPLVLAGHD------LLAGAQTGTGKTAAFGLPLLQHLGTAPQTVNGPRKP 76

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+ P   LA Q ++ ++ Y++  +I   +I G +   ++  AL R       ++I  
Sbjct: 77  RALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRR----GVDLLIAC 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D I+   + L  ++        + L +    +   +L        +TL+ ++  +
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFE 192

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
            +I ++      R P++  + P N + E I      +   +K   +   + +        
Sbjct: 193 ENIKQLA-LEFMRNPVQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLV 251

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   ++     E      A IHG  S   +   +  FK G   +L+AT +   GID
Sbjct: 252 FARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +     +I  +        +H++ GR GR       I L     +K     + +L     
Sbjct: 312 IDQLPKVINYDLPMVAEDYVHRI-GRTGRNGSTGEAISLVAQDEAKLLRQIVRMLG---- 366

Query: 617 GFLIAEEDLKQR 628
                  D++ R
Sbjct: 367 ------RDVEIR 372


>gi|315126148|ref|YP_004068151.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           sp. SM9913]
 gi|315014662|gb|ADT68000.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           sp. SM9913]
          Length = 607

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/376 (20%), Positives = 142/376 (37%), Gaps = 42/376 (11%)

Query: 267 RNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---G 322
             + + +P++ Q   I  +L+      R   +     G+GKT    + +   ++      
Sbjct: 21  EELGYKTPSEIQAQCIPLLLE------RKDVLGLAQTGTGKTAAFALPLLNNIDPSVKQP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++ P   LA Q  E  ++Y ++T  + V  + G    + +  AL R     A II+ 
Sbjct: 75  QILVLTPTRELAIQVAEAFEQYAKHTRGVEVLALYGGQSYSIQLSALRR----GAQIIVA 130

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I            L+L   DE  R G    ++   + T             +
Sbjct: 131 TPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPRE---------KQ 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T + ++     I  I+ K         +    + +  V +          KA     + E
Sbjct: 182 TCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNAHVHKNKAIVRFLEAE 241

Query: 494 EKK----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           + +        R+   +   L E    S A ++G M+   +E  +D  K+G   ++IAT 
Sbjct: 242 QYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVIATD 301

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV   S++I  +      A +H++ GR GR       IL          Y   +
Sbjct: 302 VAARGLDVDRLSLVINYDIPQDSEAYVHRI-GRTGRAGRTGKAILFVKH---NERYLLKN 357

Query: 610 VLKNTEDGFLIAEEDL 625
           ++++T+    IA+ +L
Sbjct: 358 IIRHTKS--EIAQVEL 371


>gi|221640283|ref|YP_002526545.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides KD131]
 gi|332559285|ref|ZP_08413607.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           WS8N]
 gi|221161064|gb|ACM02044.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           KD131]
 gi|332276997|gb|EGJ22312.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           WS8N]
          Length = 453

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/364 (19%), Positives = 133/364 (36%), Gaps = 43/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q  AI  ++Q       ++ + Q   G+GKTL   + +   +            +
Sbjct: 24  QPTPIQVEAIPYVMQG----RDLMGLAQ--TGTGKTLAFGLPLLHRLLGVGHPPPPRTIR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   L  Q    ++ +T+ T + V  ITG      + + L R     A I++ T 
Sbjct: 78  ALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQTERLAR----GADIMVATP 133

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +            L+L   D+    G    L+   +               +TL
Sbjct: 134 GRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLK---------RQTL 184

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I ++      R+P+K  + P  +  E I +      +G KA  +   +++ 
Sbjct: 185 LFSATMPKLIEELAHTYL-REPVKVQVAPPGKPVEKIAQGVHFTPQGDKAKLLESYLQKH 243

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +   E+   L   +      IHG  S   ++  +  F++G+  +L+AT 
Sbjct: 244 PGEQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDVLVATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+     +   +  +     +H++ GR  R     S +    P   +       
Sbjct: 304 VAARGIDIPGVRHVYNYDMPNVPENYVHRI-GRTARAGAEGSAVAFVAPAEMEEFRAVEK 362

Query: 610 VLKN 613
           +LK 
Sbjct: 363 LLKQ 366


>gi|226941463|ref|YP_002796537.1| RhlE4 [Laribacter hongkongensis HLHK9]
 gi|226716390|gb|ACO75528.1| RhlE4 [Laribacter hongkongensis HLHK9]
          Length = 457

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 131/372 (35%), Gaps = 32/372 (8%)

Query: 262 AQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-- 318
            Q+ +  + +  PT  Q  AI ++L           +     G+GKT    + + A +  
Sbjct: 13  VQRAVDELGYAEPTPIQARAIPEVLTGRDV------LAAAQTGTGKTAAFTLPIIARLRH 66

Query: 319 ---------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                        + +I+ P   LA Q    ++ YT+   +    + G +    ++  L 
Sbjct: 67  YATHSVSPAMHPVRCLILTPTRELADQIAASVQSYTKYLPLRHTCVFGGVNMDPQKADLM 126

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           R       I++ T     D ++   + L  V E        R+           +L    
Sbjct: 127 RGM----DIVVATPGRLLDHLEQKTIQLNRV-EMLVLDEADRMLDMGFILDIRRILAQLP 181

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              +TL+ ++    +I K+      R P+   +   N     +E+    +  G+K   + 
Sbjct: 182 KTRQTLLFSATFSPEIKKLAA-EFQRDPVTIEVARQNTTAATVEQAVYAVDAGQKRRLLA 240

Query: 490 PQIEEKKE------SNFRSVVERF-NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             I E+           +   +R    L          IHG  +   +   + +FK+G  
Sbjct: 241 RLINERAMSQVIVFCRTKQGADRLARELRNFDRLDAEAIHGDKAQQARLDTLAAFKDGKL 300

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+AT V   G+DV D   ++  +  +     +H++ GR GR  +    I L      K
Sbjct: 301 RILVATDVAARGLDVSDLPFVVNFDLPNSPEDYVHRI-GRTGRAGQSGVAISLMDAEEQK 359

Query: 603 NSYTRLSVLKNT 614
                  + + T
Sbjct: 360 LLEAIEKLTRQT 371


>gi|163800373|ref|ZP_02194274.1| hypothetical protein 1103602000595_AND4_06819 [Vibrio sp. AND4]
 gi|159175816|gb|EDP60610.1| hypothetical protein AND4_06819 [Vibrio sp. AND4]
          Length = 430

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 68/371 (18%), Positives = 141/371 (38%), Gaps = 27/371 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--------GQ 323
             T  Q+ AI      M++K   +       G+GKT    + M   +            +
Sbjct: 23  KLTPIQQKAIP-----MARKGFDIF-ATAQTGTGKTAAFSLPMIQQLLESSRSVSRKTAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A++MAP   LA+Q  + IK YT+ T + V  I G    + +  ALE        I++ T 
Sbjct: 77  ALVMAPTRELAEQIADNIKAYTKYTDLSVAAIFGGRKMSSQISALES----GVDILVATP 132

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
              ++ I+   + +  +D    F    R+       A   +++     P+ ++ ++    
Sbjct: 133 GRLEEHIEQGNVSVANID-FLVFDEADRILDMGFIHAVRKIMLDVDTNPQIMMFSATTSS 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---F 500
            ++ +  K    KP +  +   N   + I  +   + + +K   +   I  K       F
Sbjct: 192 QLNLLA-KDILHKPKRIEVERANTTAQTIAHVLYPVDQERKTELLSELIGRKNWRQVLVF 250

Query: 501 RSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +  E  N + +          + HG  +   +   ++ FK G  ++++AT V   G+D+
Sbjct: 251 VNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARVMVATDVAARGLDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            D   ++  +        +H++ GR GR  +    +   +           ++++     
Sbjct: 311 EDLPHVVNYDMPFLAEDYVHRI-GRTGRAGKQGHAVSFVNREEELTVVQVENLIQQRIRR 369

Query: 618 FLIAEEDLKQR 628
             +A  + KQR
Sbjct: 370 IELAGYEPKQR 380


>gi|158796|gb|AAA29013.1| Mab4611 antigen (vasa) [Drosophila melanogaster]
          Length = 648

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 134/365 (36%), Gaps = 43/365 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QA 324
           PT  Q+ +I  I            +     GSGKT   L+ + + +            Q 
Sbjct: 255 PTPIQKCSIPVISSGRD------LMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQV 308

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
            I++P   LA Q +   +K+   + + + I+ G     H+ + + R      H++I T  
Sbjct: 309 CIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR----GCHVVIATPG 364

Query: 385 LFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQ----KATAPHVLLMTATPIP 432
              D +            ++L   D     G  + ++              L+ +AT   
Sbjct: 365 RLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPE 424

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + +    L +     I         +K  I  +N+  +  + ++++    ++A     
Sbjct: 425 EIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEIL---SEQADGTIV 481

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +E K+ ++F        S           IHG      +E  +  FKNG+ K+LIAT+V
Sbjct: 482 FVETKRGADF------LASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV 535

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN-SYTRLS 609
              G+D+ +   +I  +        +H++ GR GR          +HP   +  +   + 
Sbjct: 536 ASRGLDIKNIKHVINYDMPSKIDDYVHRI-GRTGRVGNNGRATSFFHPEKDRAIAADLVK 594

Query: 610 VLKNT 614
           +L+ +
Sbjct: 595 ILEGS 599


>gi|114794734|pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
          Length = 417

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/379 (18%), Positives = 140/379 (36%), Gaps = 57/379 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 38  PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 92  NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 150

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT------QK 417
                H+++ T     D ++  K        L+L   D     G + +++          
Sbjct: 151 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 207

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               H ++ +AT  P+ + + +   +D      +    +  + I   ++ +   D+    
Sbjct: 208 KGVRHTMMFSAT-FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-RSF 265

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +L+   K       +E KK        +       H   +   IHG  S  D+E  +
Sbjct: 266 LLDLLNATGKDSLTLVFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 319

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   +     
Sbjct: 320 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATS 378

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++      +   L +L  
Sbjct: 379 FFNERNINITKDLLDLLVE 397


>gi|49480463|ref|YP_039444.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332019|gb|AAT62665.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 481

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 142/378 (37%), Gaps = 40/378 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  ++ L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   
Sbjct: 12  SKEVRRALTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+++ P   LA Q  E I    +  +I    I G  P A ++  L++    
Sbjct: 66  VEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ---- 121

Query: 375 QAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
           + HI++GT     D I+           L++   DE    G   ++   + +  T    +
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT       L+       + I  K AG     I+  +  +   +++     V   E 
Sbjct: 182 LFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIEN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I  + +E  +  +R                   IHG M   ++  VMD F+ G  
Sbjct: 242 PDSCIIFCRTQENVDHVYRQ--------LNRVNYPCDKIHGGMVQENRFGVMDDFRKGKF 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + L+AT V   GID+ + + +I  +      + +H+  GR GR       I    P   +
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYEDR 352

Query: 603 NSYTRLSVLKNTEDGFLI 620
                 + +     GF I
Sbjct: 353 FLEEIEAYI-----GFTI 365


>gi|241888805|ref|ZP_04776111.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379]
 gi|241864481|gb|EER68857.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379]
          Length = 486

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 83/357 (23%), Positives = 138/357 (38%), Gaps = 31/357 (8%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + V  +  Q +      SPT  Q   I  +L        +  + Q   GSGKT    I +
Sbjct: 7   LGVSQETVQSLTNMNFISPTGIQTETIPYVLSG------VDILAQAQTGSGKTGAFGIPL 60

Query: 315 AAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
              V    Q  ++I+AP   LAQQ  E ++  ++   + V I+ G      + + L++  
Sbjct: 61  VDTVRRNDQLQSLILAPTRELAQQVGEQLRLMSRAKGLKVSIVFGGTSIERQIQDLKK-- 118

Query: 373 HGQAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGVQQ--RLKLTQKATAPH 422
             +  II+GT     D I            L+L   DE    G  +  R  L++  +   
Sbjct: 119 --RPQIIVGTPGRVIDHINRRTIKLETLTHLVLDEADEMLNMGFIEDVRFILSKITSRHQ 176

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEK-PAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            LL +AT     + L+     D   I        KP  T    I R +E +E L   L  
Sbjct: 177 TLLFSATMPKTIMELSKEFMKDYKLIKTMSDEDLKPDITEYATIARENEKLETLVGFLD- 235

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                   P +        R V E  ++L      +  + HG ++   +  ++  FKN +
Sbjct: 236 -----VQNPNLAIVFGRTKRRVDELASALIAKGYLAEGL-HGDITQSKRLEILRKFKNNS 289

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            ++L+AT V   GID+ D + +   +      +  H++ GR GR  +    I   +P
Sbjct: 290 LQILVATDVAARGIDISDVTHVYNFDIPQDVESYTHRI-GRTGRAGKSGVAITFLNP 345


>gi|219113631|ref|XP_002186399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583249|gb|ACI65869.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 414

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/345 (21%), Positives = 126/345 (36%), Gaps = 39/345 (11%)

Query: 272 SPTKSQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIM 327
            P+  Q+ AI   IL           I Q   G+GKT    I   A ++      QA+I+
Sbjct: 63  KPSAIQQRAIKPTILA-------KDLIAQAQSGTGKTATFAIGTLARLDPKLRECQALIL 115

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LAQQ  + +        I V    G        + L+       H+++GT     
Sbjct: 116 APTRELAQQIQKVVLALGDYMDIQVHACVGGTAVRDDIRTLQA----GVHVVVGTPGRVF 171

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVL 437
           D I    L L  +        DE    G + ++            V L +AT     L +
Sbjct: 172 DMINRRALRLDSIRQFFLDEADEMLSRGFKDQIYDIFKFLPETVQVCLFSATMPLDVLEV 231

Query: 438 TSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIE--RLKVVLSEGKKAYWICPQIE 493
           T     +  +I  K      + IK   I +++ D  +E            +A   C    
Sbjct: 232 TERFMREPVRILVKKDELTLEGIKQFYISVDKEDWKLETLCDLYETLTITQAIIYCNT-- 289

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R  V+      +    +++ +HG M   +++ +M  F++G+ ++LI T ++  
Sbjct: 290 -------RRKVDWLQEEMQKRDFTVSCMHGDMDQRERDIIMREFRSGSSRVLITTDLLAR 342

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GIDV   S++I  +        +H++ GR GR       I     
Sbjct: 343 GIDVQQVSLVINFDLPTNRENYIHRI-GRSGRFGRKGVAINFLTE 386


>gi|304367670|gb|ADM26640.1| vasa-like protein [Branchiostoma floridae]
          Length = 785

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/383 (17%), Positives = 136/383 (35%), Gaps = 50/383 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------------A 320
           PT  Q+ +I  +L           +     GSGKT   L+ +   +              
Sbjct: 358 PTPVQKYSIPIVLGGRD------LMACAQTGSGKTAAFLLPVLTGMMKEGLAGSSFSNIQ 411

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             QA+ +AP   LA Q +   +K++  T +   I  G +   H +  ++R      H+++
Sbjct: 412 EPQAICVAPTRELAIQIFSEARKFSYGTMLRPCIAYGGVSVMHHKSQIQR----GCHLLV 467

Query: 381 GTHALFQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D I        KL  +I+DE  R          ++        M A    +TL
Sbjct: 468 ATPGRLLDFIDKGVISIKKLKYLILDEADRMLDMGFEPEIRRLVETASWGMPAKGERQTL 527

Query: 436 VLTSLGDIDISKITEKP-------------AGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           + ++    +I K+ +                    ++  ++  ++ D+  +   ++ + G
Sbjct: 528 MFSATFPEEIQKLAQDFLEDYIFLTIGRVGGANTDVEQTVMESSQYDKREKLTDILGNLG 587

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           ++   +            +   +   S           IHG     ++E  +  F+ G  
Sbjct: 588 QERVLVFV--------ETKRNADFLASYLSQSGFPTTSIHGDRLQKEREEALMDFRTGRA 639

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH-PPLS 601
            +L+AT+V   G+D+    +++  +        +H++ GR GR       I  Y     +
Sbjct: 640 PVLVATSVAARGLDIPKVMVVVNYDLPSSIDEYVHRI-GRTGRVGNTGKAISFYDSDKDA 698

Query: 602 KNSYTRLSVLKNTEDGFLIAEED 624
             + + + VL + +       ED
Sbjct: 699 SLARSLVKVLADAQQNVPDWLED 721


>gi|323699639|ref|ZP_08111551.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132]
 gi|323459571|gb|EGB15436.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 369

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 128/371 (34%), Gaps = 28/371 (7%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ +I   +      +PT  QE AI  +L+     + ++ + Q   G+GKT    + +
Sbjct: 6   FSLDRRILAGVRDCGYETPTPIQEQAIPLVLKG----HDVMGLAQ--TGTGKTAAFALPI 59

Query: 315 AAAVEAG-------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              +  G          +++AP   LA Q  E   +  ++T I    + G +    + KA
Sbjct: 60  LQRLLTGNKSGRALPSVLVLAPTRELALQIDENFNQLGRHTGIRCGAVIGGVGMNPQIKA 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
                     +I+         +    + L  +D         R+           +L  
Sbjct: 120 FS-----HCRVIVACPGRLVRLLNNGSVSLTHID-TLVLDEADRMLDMGFMPDIKRILAK 173

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                + L+ ++    DI K+ E        KTV +   +  E +E         +K+  
Sbjct: 174 LPARRQNLLFSATMPQDIRKLAENILNDP--KTVQVANTQPVESVEHSFYATENNRKSEL 231

Query: 488 ICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +   ++  +          +   +           +   + G MS   ++  +D F++G+
Sbjct: 232 LTKLLDRAEHQSVLVFTKTKHKAKNLARKLAGSGYNATFLQGNMSQNQRQRALDGFRDGS 291

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +++AT +   GID    S +I  +         H++ GR GR       + L      
Sbjct: 292 YDIMVATDIAARGIDCERISHVINFDMPDTVETYTHRI-GRTGRAGRSGHAVSLVTGEDK 350

Query: 602 KNSYTRLSVLK 612
                   V++
Sbjct: 351 TQVRDIERVMR 361


>gi|283471297|emb|CAQ50508.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 506

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 135/350 (38%), Gaps = 37/350 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L ++ F  PT  Q+ +I   LQ +        + Q   G+GKT    I +   V  + G 
Sbjct: 17  LESMGFKEPTPIQKDSIPYALQGID------ILGQAQTGTGKTGAFGIPLIEKVVGKQGV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q++I+AP   LA Q  E ++++++   + V  + G MP   + KAL++       I++GT
Sbjct: 71  QSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK----GPQIVVGT 126

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +          + LIL   DE    G    ++                   +T
Sbjct: 127 PGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ--------RQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I  + ++   + P     +     D  IE    ++ E +K       ++ 
Sbjct: 179 MLFSATMPKAIQALVQQFM-KSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +      F     R + L     S       +HG ++   +  V+  FKN    +L+AT
Sbjct: 238 HQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|240949643|ref|ZP_04753978.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           NM305]
 gi|240295901|gb|EER46577.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           NM305]
          Length = 604

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 82/421 (19%), Positives = 156/421 (37%), Gaps = 52/421 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q++ I  +L           +     GSGKT    + + A ++      Q ++MA
Sbjct: 28  TPSPIQQACIPHLLNGRDV------LGMAQTGSGKTAAFSLPILAQIDPEQRHPQMLVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  +++T+N   I    I G      R     R     A +++GT     
Sbjct: 82  PTRELAIQVADACEQFTKNMRGIRTVTIYGG----QRYDIQIRALKNGAQVVVGTPGRIL 137

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D I+   L        +L   DE  R G  + +           ++       +T + ++
Sbjct: 138 DHIRRGTLDLSALKAIVLDEADEMLRMGFIEDV---------ETVMAELPEDHQTALFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I +IT++   + P +  I    R    I +   +++  +K   +   +E +    
Sbjct: 189 TMPEPIRRITKRFM-KDPQEVKIQASQRSAPDIAQSYWLVNGFRKNDALLRFLEVEDFDA 247

Query: 500 FRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                           L E      A ++G M+   +E  +D  K+G   +++AT V   
Sbjct: 248 AIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQSREQALDKLKSGRLDIIVATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+   S+++  +      + +H++ GR GR       +L   P   +       ++K 
Sbjct: 308 GIDIDRISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEHLIKK 366

Query: 614 TEDGFLIAEED--LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
             D   I   +  +++R+               +  Q E HD  LE  R+  + + T D 
Sbjct: 367 PIDEVAIPNHEILMEKRRAK---------FKARIEKQLEHHD--LEKYRELLEDLFTADQ 415

Query: 672 D 672
           D
Sbjct: 416 D 416


>gi|193212281|ref|YP_001998234.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum
           parvum NCIB 8327]
 gi|193085758|gb|ACF11034.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB
           8327]
          Length = 647

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 141/396 (35%), Gaps = 43/396 (10%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +Q +      + +   + Q +      +PT  Q + I  +L+          + Q   G+
Sbjct: 12  QQEQSLNFRSLQLAEPLLQALEAVGYETPTPIQANTIPLLLEGRDV------LGQAQTGT 65

Query: 305 GKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMP 360
           GKT    +   + ++   +  Q +++AP   LA Q  E    Y +       + I G   
Sbjct: 66  GKTAAFALPTLSNIDLSLSDPQVLVLAPTRELAIQVAEAFHTYAEFMPDFHVLPIYGGQD 125

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL 412
              + + L+R      H+++GT     D ++           L+L   DE  R G    +
Sbjct: 126 YGVQIRMLKR----GVHVVVGTPGRVMDHMRKGTLNLDGLKCLVLDEADEMLRMGFIDDV 181

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           +     T             +  + ++     I +I  K        T+      ++ + 
Sbjct: 182 EWILDQTPE---------SRQVALFSATMPQPILRIARKYLKAPAEITIQAKTTTVETIR 232

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN-----FRSVVERFNSLHEHFTSS---IAIIHGR 524
           +R  +V   G        +I E +  +      R+  E  N L E   +     A ++G 
Sbjct: 233 QRYWMV--GGHHKLDALTRILEVEPFDGIIIFVRTKTETVN-LAEKLQARGYLAAALNGD 289

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           M    +E  ++  K+GT  ++IAT V   G+DV   S +I  +      + +H++ GR G
Sbjct: 290 MVQSARERTIEQLKDGTLNIVIATDVAARGLDVDRISHVINYDIPTDTESYVHRI-GRTG 348

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
           R       IL   P      +      +   D   +
Sbjct: 349 RAGRSGEAILFVSPRERGMLFAIERATRKRIDKMEL 384


>gi|147777235|emb|CAN76636.1| hypothetical protein VITISV_010658 [Vitis vinifera]
          Length = 539

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 68/379 (17%), Positives = 139/379 (36%), Gaps = 45/379 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            P+  Q  A   +L      +    I     GSGKTL   +     V +  +        
Sbjct: 141 QPSPIQSHAWPFLL------DHRDFIGIAATGSGKTLAFGVPAMMHVLSKRKSKTSKGVN 194

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              ++++P   LAQQ  + + +  ++  +    + G   +  +  +L+        I+IG
Sbjct: 195 PLCLVLSPTRELAQQISDVLCEAGKHCGVKSVCLYGGTSKGPQISSLKS----GVDIVIG 250

Query: 382 THALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T    +D I+     L  V     DE  R                  +L    P  + ++
Sbjct: 251 TPGRLKDLIEMGVCCLTEVSFVVLDEADRMLDMGFE------PEVRSILSQTCPARQMVM 304

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWICPQIEE 494
            ++   + + ++ ++     P+K VI   +     +V++ ++V+    +    +    + 
Sbjct: 305 FSATWPLPVHQLAQEFMDPNPVKVVIGSEDLAANHDVMQIVEVLDDRSRDERLLTLLGKY 364

Query: 495 KKESNFR--------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            K    R            R  ++ +    ++  IHG  +   + + +  FK G+C L+I
Sbjct: 365 HKSQRNRVLVFVLYKKEAARVENMLQRRGWNVVSIHGDKAQQARTAALSLFKKGSCPLMI 424

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ D  ++I  +        +H++ GR GR  +       +       +  
Sbjct: 425 ATDVAARGLDIPDVEVVINYSFPLTTEDYVHRI-GRTGRAGKKGVAHTFFMQENKGLAGE 483

Query: 607 RLSVLKNTEDGFLIAEEDL 625
            ++VLK       I   DL
Sbjct: 484 LVNVLKEAG---QIVPADL 499


>gi|116071349|ref|ZP_01468618.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
 gi|116066754|gb|EAU72511.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
          Length = 467

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 139/377 (36%), Gaps = 36/377 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N+  +  + I      SPT  Q   I ++LQ          +     G+GKT   ++ +
Sbjct: 38  LNLCAETVRSIREAGYLSPTPIQTLTIPEVLQGKD------IMASAQTGTGKTAAFILPI 91

Query: 315 --AAAVEAGGQ-----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
                VE   +     ++I+ P   LA Q     K YT+   I  + + G +    + K 
Sbjct: 92  IELLRVEDKPKRLQVHSLILTPTRELAAQVEANAKGYTKYLGIRSDAVFGGVSIRPQVKR 151

Query: 368 LERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
           L+    G   I++ T     D     +I++  L ++++DE  R      ++  +K     
Sbjct: 152 LQ----GGVDILVATPGRLLDLINQKTIRFDNLKILVLDEADRMLDMGFIRDIKK----- 202

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
             ++   P  R  ++ S       K         P++      N+    IE L       
Sbjct: 203 --VIEFLPKKRQNMMFSATFSAPIKKLALGLLNDPVEIKASVQNKAAPTIEHLVHPCDMA 260

Query: 483 KKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           +K   +C  I+  +          +   ++   +  H     + IHG  S   +   ++ 
Sbjct: 261 RKVDLLCHLIKTNEWKQVLVFARTKHGADKVVKILCHQHIKASAIHGNKSQGARTRALEG 320

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKNG  K+L+AT +   GID+     +I  +  +     +H++ GR GR  E    I L 
Sbjct: 321 FKNGDVKILVATDIAARGIDIHQLPYVINLDLPNVAEDYVHRI-GRTGRAGENGHAISLV 379

Query: 597 HPPLSKNSYTRLSVLKN 613
               +         + N
Sbjct: 380 AAEEALLLKAIEKFIGN 396


>gi|317472067|ref|ZP_07931399.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316900471|gb|EFV22453.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 528

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 127/339 (37%), Gaps = 35/339 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  Q +AI  +L+          + Q   G+GKT    I +   ++      QA+I+ P 
Sbjct: 28  SPIQGAAIPVVLEGRD------IVGQAQTGTGKTAAFGIPLLEKMDTKVKRPQAMILCPT 81

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + I+K  +      V  I G     ++ ++L+      A+II+GT     D 
Sbjct: 82  RELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQIRSLKT----GANIIVGTPGRIMDH 137

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++ + L        +L   DE    G ++ +   L +       LL +AT     L +T 
Sbjct: 138 MRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQTLLFSATMPKAILDITK 197

Query: 440 LGDID--ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
               D  + K+  K      I+     +    +V    +++     K   +         
Sbjct: 198 KYQKDSKLIKVVRKELTVPNIEQYYYEVRPKQKVEVLCRLLDMHSPKLSIVF-------- 249

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N + +V+      +        IHG +    ++ VM SF+ G   +L+AT V   GIDV
Sbjct: 250 CNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILVATDVAARGIDV 309

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            D   +   +        +H++ GR GR     +     
Sbjct: 310 DDVDAVFNYDLPQDDEFYVHRI-GRTGRAGRTGNAFTFV 347


>gi|228988681|ref|ZP_04148767.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771132|gb|EEM19612.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 481

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 140/378 (37%), Gaps = 40/378 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  ++ L  + +  PT+ Q   I   LQ      +   +++   GSGKT    I +   
Sbjct: 12  SKEVRRALTGLGYEHPTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+++ P   LA Q  E I    +  +I    I G  P A ++  L++    
Sbjct: 66  VEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ---- 121

Query: 375 QAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
           + HI++GT     D I+           L++   DE    G   ++   + +  T    +
Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT       L+         I  K AG     I+  +  +   +++     V   E 
Sbjct: 182 LFSATLPEDVERLSRTYMNAPIHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIEN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I  + +E  +  +R                   IHG M   D+  VMD F+ G  
Sbjct: 242 PDSCIIFCRTQENVDHVYRQ--------LNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKF 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + L+AT V   GID+ + + +I  +      + +H+  GR GR       I        +
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITSYEDR 352

Query: 603 NSYTRLSVLKNTEDGFLI 620
                 + +     GF I
Sbjct: 353 FLEEIEAYI-----GFAI 365


>gi|223932903|ref|ZP_03624899.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|330833198|ref|YP_004402023.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus
           suis ST3]
 gi|223898484|gb|EEF64849.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|329307421|gb|AEB81837.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3]
          Length = 526

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 127/344 (36%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA---VIMA 328
           +P+  QE  I   L+          I Q   G+GKT    +     ++   QA   +I+A
Sbjct: 23  TPSPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIDTNNQAIQALIIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + K+ +   + V  + G      + KAL       AHI++GT     D
Sbjct: 77  PTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT---PIPRTL 435
            I+   L L  V        DE    G        + +   +   LL +AT   PI R +
Sbjct: 133 LIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQTLLFSATMPEPIKR-I 191

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +  + + +  KI  K      +    + +   ++     +++  +  +   +  +    
Sbjct: 192 GVKFMKEPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRLMDVDQPELSIVFGRT--- 248

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+
Sbjct: 249 -----KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGL 303

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           D+   + +   +      + +H++ GR GR  +    I    P 
Sbjct: 304 DISGVTHVYNYDIPQDPESYVHRI-GRTGRAGQSGQSITFVSPN 346


>gi|332849248|ref|XP_511724.3| PREDICTED: eukaryotic initiation factor 4A-III [Pan troglodytes]
          Length = 411

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 60  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 114 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 170 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 230 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 282

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 283 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 342

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 343 VPQVSLIINYDLPNNRELSIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 401

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 402 EMPMNVADL 410


>gi|312863656|ref|ZP_07723894.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           vestibularis F0396]
 gi|311101192|gb|EFQ59397.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           vestibularis F0396]
          Length = 529

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 34/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     +   E   QA+++A
Sbjct: 23  KPSPIQELTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIRTEENTIQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ ++  + V  + G      + KAL       AHI++GT     D
Sbjct: 77  PTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLV 436
            I+   L L  +        DE    G        +++       LL +AT     + + 
Sbjct: 133 LIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRIG 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +  + D +  KI  K      +    I +   ++     +++  +  +   +  +     
Sbjct: 193 VQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPELSIVFGRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D
Sbjct: 249 ----KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +   + +   +      + +H++ GR GR  +    I    P 
Sbjct: 305 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGQSGQSITFVAPN 346


>gi|293332577|ref|NP_001169296.1| hypothetical protein LOC100383160 [Zea mays]
 gi|224028479|gb|ACN33315.1| unknown [Zea mays]
          Length = 508

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/392 (17%), Positives = 144/392 (36%), Gaps = 43/392 (10%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           K       +     +Q +     F+ P+  Q  A   +L           I     GSGK
Sbjct: 85  KYAPLRSFSAAELPSQVLECCSAFARPSPIQAHAWPFLLDGRD------FIGIAATGSGK 138

Query: 307 TLVALIAMAAAVEAG----------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           T+   +     +              + ++++P   LAQQ  + + +      I    + 
Sbjct: 139 TIAFGVPALMHIRKKVGGKAGKKAVPRCLVLSPTRELAQQIADVLSEAGAPCGIKSVCLY 198

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQR 411
           G   +  +  AL+        I+IGT    +D I+     L  V     DE  R      
Sbjct: 199 GGTKKEPQISALKS----GVDIVIGTPGRMKDLIEMGVCCLNEVSFVVLDEADRM----- 249

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI--D 469
           L L  +     +L  T++ + + ++ ++   + + K+ ++     PIK VI   +     
Sbjct: 250 LDLGFEPEVRAILSQTSS-VRQMVMFSATWPLAVHKLAQEFMDPNPIKVVIGSEDLAANH 308

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFR--------SVVERFNSLHEHFTSSIAII 521
           +V++ ++V+    + +  +    +  +  + R            R  ++ +        +
Sbjct: 309 DVMQIVEVLDDRTRDSRLLALLDKYHQAQSNRVLVFVLYKKEAARVETMLQRRGWKAVSV 368

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG  +  D+   +  FK G C L+IAT V   G+D+ D  ++I  +        +H++ G
Sbjct: 369 HGDKAQHDRTKALSLFKEGKCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRI-G 427

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           R GR  +       +       +   ++VL+ 
Sbjct: 428 RTGRAGKKGVAHTFFTQANKALAGELVNVLRE 459


>gi|88808729|ref|ZP_01124239.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
 gi|88787717|gb|EAR18874.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
          Length = 429

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 131/370 (35%), Gaps = 41/370 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QAV 325
           P+  Q  AI  ++           +     G+GKT    + +   +  G        +A+
Sbjct: 42  PSPIQAQAIPAVIDGRDV------MAAAQTGTGKTAGFTLPVLERLRHGKPAGRGQIRAL 95

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E ++ Y+ +  +  +++ G +    +   L     G   +++ T   
Sbjct: 96  VLTPTRELAAQVLENVRAYSSHLPLRSDVVFGGVKANPQINRLR----GGVDLLVATPGR 151

Query: 386 FQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D     ++ + +L  +++DE  R      +           L+       +TL+ ++ 
Sbjct: 152 LLDLHQQGALHFDQLECLVLDEADRMLDMGFIHDI------RRLIRLMPVKRQTLLFSAT 205

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
               I K+        P+   + P N+    +E++       +K+  +   I        
Sbjct: 206 FSAPIRKLAS-GLLHDPVHLQVTPENQTARSVEQVVHPCDMARKSDLLSHLIRAGDWRQV 264

Query: 500 -----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +    R          S A IHG  S   +   +  FK G  ++L+AT +   G
Sbjct: 265 LVFSRTKHGANRVADRLSKEGLSAAAIHGNKSQGARTRALQGFKQGNIRVLVATDIAARG 324

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-----LSKNSYTRLS 609
           ID+     ++  +  +     +H++ GR GR  E    + L          +    T   
Sbjct: 325 IDIQQLPHVVNLDLPNVAEDYVHRI-GRTGRAGETGHAVSLVAAEEALLLKAIERLTGEE 383

Query: 610 VLKNTEDGFL 619
           + + T DGF 
Sbjct: 384 LTRQTVDGFE 393


>gi|254482185|ref|ZP_05095426.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037510|gb|EEB78176.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 618

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 71/354 (20%), Positives = 135/354 (38%), Gaps = 36/354 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  QK L ++ +  P+  Q + I  +++          + Q   G+GKT    + + A 
Sbjct: 16  SEPLQKALADVGYETPSAIQAATIPALIEGRDV------LGQAQTGTGKTAAFALPILAQ 69

Query: 318 VEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAH 373
           ++A     Q +++AP   LA Q  E  +KY +  +   V  I G      + + L+R   
Sbjct: 70  LQASSKKPQVLVLAPTRELAIQVAEAFQKYARYLKDFHVVPIYGGADYRGQLRQLQR--- 126

Query: 374 GQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHV 423
               +++GT     D ++           L+L   DE  R G    ++    Q      +
Sbjct: 127 -GVQVVVGTPGRVMDHMRRGSLDLSALRTLVLDEADEMLRMGFIDDVEWILEQTPDDRQI 185

Query: 424 LLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            L +AT       +    L +     I  +    K I+  +  +  + ++    +++  E
Sbjct: 186 ALFSATMPTAIARIAKQHLNNPVHVAIEVQTMTNKSIRQRVWMMAGVHKLDALTRILEVE 245

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 +  +         R               S A ++G +    +E+ +D+ K GT
Sbjct: 246 DFDGVIVFVRT--------RIATAEIAEKLAARGYSAAALNGDIPQKQREATIDNLKRGT 297

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             +L+AT V   G+DV   S +I  +  +   A +H++ GR GR       IL 
Sbjct: 298 IDILVATDVAARGLDVERISHVINYDIPYDVEAYVHRI-GRTGRAGREGDAILF 350


>gi|119495979|ref|XP_001264763.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|143359979|sp|A1D373|PRP5_NEOFI RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|119412925|gb|EAW22866.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 1193

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 85/434 (19%), Positives = 154/434 (35%), Gaps = 59/434 (13%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----- 318
           ++  + +  PT  Q  AI  I+           I     GSGKT+  LI M   +     
Sbjct: 571 VIHRLGYENPTSIQSQAIPAIMSGRDV------IGVAKTGSGKTIAFLIPMFRHIRDQRP 624

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +IM P   LA Q ++  K + +   +      G  P   +   L+R     
Sbjct: 625 LENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKR----G 680

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A I++ T     D +           ++  V++DE  R           K      ++  
Sbjct: 681 AEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMK------IMAN 734

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K    KPI+ V+   + +   I ++  V +E  K   
Sbjct: 735 IRPDRQTVLFSATFPRNMEALARKSLT-KPIEIVVGGKSVVAPEITQIVEVRNEDTKFVR 793

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  ++L             IHG    ID++S ++
Sbjct: 794 LLEILGNLYSDDANEDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIE 853

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    +++  +A +     +H+  GR GR     + +  
Sbjct: 854 DFKAGIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 912

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIA-----EED--LKQRKEGEILGIKQSGM--PKFLI 646
                 + S      L+    G  +        D  L++ K G+      SG        
Sbjct: 913 LTEEQERYSVDIAKALRQ--SGQKVPEPVQKMVDSFLEKVKAGK-EKASASGFGGKGLER 969

Query: 647 AQPELHDSLLEIAR 660
              E   + +   R
Sbjct: 970 LDQERDAARMRERR 983


>gi|15925071|ref|NP_372605.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927656|ref|NP_375189.1| hypothetical protein SA1885 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283733|ref|NP_646821.1| hypothetical protein MW2004 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486874|ref|YP_044095.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650754|ref|YP_186888.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161548|ref|YP_494683.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195982|ref|YP_500795.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148268533|ref|YP_001247476.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394597|ref|YP_001317272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151222197|ref|YP_001333019.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156980397|ref|YP_001442656.1| hypothetical protein SAHV_2066 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510293|ref|YP_001575952.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253316240|ref|ZP_04839453.1| putative helicase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006870|ref|ZP_05145471.2| putative helicase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793840|ref|ZP_05642819.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
 gi|258407008|ref|ZP_05680158.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
 gi|258422029|ref|ZP_05684946.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
 gi|258433601|ref|ZP_05688674.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
 gi|258440496|ref|ZP_05690666.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258445704|ref|ZP_05693882.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
 gi|258450158|ref|ZP_05698253.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
 gi|258453208|ref|ZP_05701199.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus A5948]
 gi|258453387|ref|ZP_05701369.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
 gi|262049250|ref|ZP_06022125.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
 gi|262052494|ref|ZP_06024692.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
 gi|269203717|ref|YP_003282986.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282895275|ref|ZP_06303488.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
 gi|282911647|ref|ZP_06319446.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282923070|ref|ZP_06330755.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|282929553|ref|ZP_06336950.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
 gi|284025116|ref|ZP_06379514.1| putative helicase [Staphylococcus aureus subsp. aureus 132]
 gi|294850566|ref|ZP_06791293.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|295407012|ref|ZP_06816814.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
 gi|296275711|ref|ZP_06858218.1| putative helicase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246745|ref|ZP_06930562.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
 gi|81648913|sp|Q6G7M9|Y1985_STAAS RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAS1985
 gi|81694077|sp|Q5HEB9|Y2072_STAAC RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SACOL2072
 gi|81704263|sp|Q7A0D2|Y2004_STAAW RecName: Full=Probable DEAD-box ATP-dependent RNA helicase MW2004
 gi|81705333|sp|Q7A4G0|Y1885_STAAN RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SA1885
 gi|81781186|sp|Q99SH6|Y2081_STAAM RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAV2081
 gi|122538977|sp|Q2FWH5|Y2316_STAA8 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SAOUHSC_02316
 gi|123484971|sp|Q2FF45|Y2037_STAA3 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SAUSA300_2037
 gi|13701876|dbj|BAB43168.1| SA1885 [Staphylococcus aureus subsp. aureus N315]
 gi|14247854|dbj|BAB58243.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21205175|dbj|BAB95869.1| MW2004 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245317|emb|CAG43792.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284940|gb|AAW37034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus COL]
 gi|87127522|gb|ABD22036.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203540|gb|ABD31350.1| ATP-dependent RNA helicase, DEAD box family, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741602|gb|ABQ49900.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149947049|gb|ABR52985.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374997|dbj|BAF68257.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156722532|dbj|BAF78949.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160369102|gb|ABX30073.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257787812|gb|EEV26152.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
 gi|257841341|gb|EEV65785.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
 gi|257841929|gb|EEV66361.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
 gi|257849332|gb|EEV73311.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
 gi|257852565|gb|EEV76483.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257855543|gb|EEV78480.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
 gi|257856632|gb|EEV79538.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
 gi|257859154|gb|EEV82011.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus A5948]
 gi|257864368|gb|EEV87114.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
 gi|259159615|gb|EEW44661.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
 gi|259162615|gb|EEW47182.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
 gi|262076007|gb|ACY11980.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269941681|emb|CBI50088.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
 gi|282324412|gb|EFB54725.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282589032|gb|EFB94136.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
 gi|282593261|gb|EFB98258.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|282762348|gb|EFC02495.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
 gi|285817746|gb|ADC38233.1| Cold-shock DEAD-box protein A [Staphylococcus aureus 04-02981]
 gi|294822586|gb|EFG39028.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|294968037|gb|EFG44064.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
 gi|297176405|gb|EFH35677.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
 gi|312830433|emb|CBX35275.1| DEAD/DEAH box helicase family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315128752|gb|EFT84752.1| putative helicase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315196987|gb|EFU27329.1| putative helicase [Staphylococcus aureus subsp. aureus CGS01]
 gi|323439203|gb|EGA96930.1| ATP-dependent RNA helicase [Staphylococcus aureus O11]
 gi|323442419|gb|EGB00048.1| ATP-dependent RNA helicase [Staphylococcus aureus O46]
 gi|329314766|gb|AEB89179.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329724041|gb|EGG60565.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329726361|gb|EGG62829.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329729332|gb|EGG65740.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 506

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 135/350 (38%), Gaps = 37/350 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L ++ F  PT  Q+ +I   LQ +        + Q   G+GKT    I +   V  + G 
Sbjct: 17  LESMGFKEPTPIQKDSIPYALQGID------ILGQAQTGTGKTGAFGIPLIEKVVGKQGV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q++I+AP   LA Q  E ++++++   + V  + G MP   + KAL++       I++GT
Sbjct: 71  QSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK----GPQIVVGT 126

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +          + LIL   DE    G    ++                   +T
Sbjct: 127 PGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ--------RQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I  + ++   + P     +     D  IE    ++ E +K       ++ 
Sbjct: 179 MLFSATMPKAIQALVQQFM-KSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +      F     R + L     S       +HG ++   +  V+  FKN    +L+AT
Sbjct: 238 HQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|315612763|ref|ZP_07887674.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314873|gb|EFU62914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
          Length = 525

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 132/363 (36%), Gaps = 34/363 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +   L L  +        DE    G        +++       LL +AT     + + + 
Sbjct: 135 KRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  KI  K    + +    I +   ++      ++  E  +   +  +       
Sbjct: 195 FMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTHLMDVEQPELAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+ 
Sbjct: 249 --KRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    I    P          ++ K    G 
Sbjct: 307 GVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGL 365

Query: 619 LIA 621
             A
Sbjct: 366 KPA 368


>gi|149908416|ref|ZP_01897079.1| putative ATP-dependent RNA helicase DbpA [Moritella sp. PE36]
 gi|149808579|gb|EDM68514.1| putative ATP-dependent RNA helicase DbpA [Moritella sp. PE36]
          Length = 438

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 88/439 (20%), Positives = 160/439 (36%), Gaps = 66/439 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q  ++  IL+          I QG  GSGKT    + +   ++      Q +++ P 
Sbjct: 2   TPIQAQSLPSILEGKDV------IGQGKTGSGKTAAFGLGLLQRLDVERFRIQTLVLCPT 55

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + I+K  +    I V  + G MP   +  +LE      AHII+GT     D 
Sbjct: 56  RELADQVAKEIRKLARGIHNIKVLTLCGGMPFGPQIGSLEH----GAHIIVGTPGRVLDH 111

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           +    L        +L   D     G Q  L           ++  A    +TL+ ++  
Sbjct: 112 LTKGTLRLDNLTTFVLDEADRMLEMGFQDAL---------DAIVEKAPSDRQTLLFSATF 162

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---- 497
              I  I  K     P    +   +    + +    V + G++   +   + + K     
Sbjct: 163 PKKIQAIAAKIMN-NPEMVEVASTHDDSTIKQHFYKVKNFGERLDTVRGLLLQHKPESTV 221

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +  V+       HF  S+  +HG +   D++  +  F N +  +++AT V   G+
Sbjct: 222 IFCNTKKDVQDVADELGHFGFSVIALHGDLEQRDRDQALVRFSNKSISVMVATDVASRGL 281

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--------------LS 601
           D+     +I     H     +H++ GR GR         ++                 ++
Sbjct: 282 DIESLDAVINFQVSHDSEIHVHRI-GRTGRAGSKGMAYTIFDEKEAYQVALLEDRFGMIT 340

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLIAQPELH 652
             +   +SVL   E   +   E ++           G+ILG    + G+   L+ + +L 
Sbjct: 341 PEALPPMSVL--NESPMMPPMECIRIDGGKKQKVRAGDILGALTGKDGIDGKLVGKIQLF 398

Query: 653 DSLLEIAR--KDAKHILTQ 669
           D+   +A   K AK  + +
Sbjct: 399 DNCAYVAVDTKVAKAAVQK 417


>gi|148272405|ref|YP_001221966.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830335|emb|CAN01269.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 586

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 41/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q + I  +L           +     G+GKT    + + + ++      QA+++A
Sbjct: 40  TPSAIQAATIPSLLSGRDV------LGVAQTGTGKTAAFALPILSNLDVSQKTPQALVLA 93

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  ++Y      + V  + G      +  AL R      H+++GT     
Sbjct: 94  PTRELALQVCEAFERYASGMRGVHVLPVYGGQGYGVQLSALRR----GVHVVVGTPGRIM 149

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVL 437
           D +        Q   L+L   DE  + G  + +   L     +  + L +AT   +   +
Sbjct: 150 DHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILADTPKSKQIALFSATMPAQIRRI 209

Query: 438 TSLGDIDISKITEKPAGRKPIKT-----VIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +     D  +IT K        T     ++    ++D +   L+    EG   +      
Sbjct: 210 SGKYLQDPEEITVKNKTTTSANTTQRYLMVSYPQKVDALTRILETENFEGMIVFV----- 264

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   ++  E           + A I G ++   +E  ++  KNG   +L+AT V  
Sbjct: 265 ------RTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILVATDVAA 318

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G+DV   S ++  +      + +H++ GR GR     + I    P
Sbjct: 319 RGLDVDRISHVVNYDIPIDTESYVHRI-GRTGRAGRSGAAISFVTP 363


>gi|217970063|ref|YP_002355297.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217507390|gb|ACK54401.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 545

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 132/358 (36%), Gaps = 30/358 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q  AI  ++           +     G+GKT    + +   +             
Sbjct: 23  EPTPIQRQAIPIVIAGKDV------MGGAQTGTGKTAGFTLPLLHRIARHANTSTSPARH 76

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+AP   LA Q +E +K Y+++  +    + G +    ++  L R       I+I
Sbjct: 77  QTRALILAPTRELAMQVFESVKTYSKHLPLRSVCVYGGVDIRPQQAELRR----GIEIVI 132

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D ++   + L  V E        R+           +L       ++L+ ++ 
Sbjct: 133 ATPGRLLDHLEQKSINLSQV-EVLVLDEADRMLDMGFIPDIKRILALLPKQRQSLLFSAT 191

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
              +I ++ ++   ++P    +   N + E I  +   +S G K   +   +  K ++  
Sbjct: 192 FSDEIKRLADQ-MLKEPQLIEVARRNMVSETITHVVHPVSSGMKRNLLAHLLRHKPDTQA 250

Query: 499 ----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               + + +  R     E    S   IHG      +   +++FK+G  ++L+AT V   G
Sbjct: 251 LVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGKLRVLVATDVAARG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+ +   +I     H     +H++ GR GR       I L              ++K
Sbjct: 311 LDIDELPFVINFELPHTAEDYVHRI-GRTGRAGHHGYAISLVSSEEKHWLSEIEKLIK 367


>gi|195030246|ref|XP_001987979.1| GH10918 [Drosophila grimshawi]
 gi|193903979|gb|EDW02846.1| GH10918 [Drosophila grimshawi]
          Length = 1791

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 120/349 (34%), Gaps = 42/349 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q+ ++  I +          +     GSGKT   L+ M   +            QA
Sbjct: 205 PTPIQKVSMPVISEGRD------LMACAQTGSGKTAAFLLPMICKLLDEVDNVEIGKPQA 258

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI++P   LA Q +   +K+   + + + I+ G     ++ + + +      H++I T  
Sbjct: 259 VIVSPTRELAIQIFHEARKFAFTSYLKISIVYGGTSVKYQNECITK----GCHLLIATPG 314

Query: 385 LFQDSIQY--------YKLILVIVDEQHRFGVQQ---RLKLTQKATAPHVLLMTATPIP- 432
              D +            ++L   D     G      ++   Q     H  LM +   P 
Sbjct: 315 RLLDFVDRTFITFEATRFVVLDEADRMLDMGFADSMRKIMQHQTMRPEHQTLMFSATFPE 374

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + +    L +     I         ++     + + D+  + +  +L EG     +  
Sbjct: 375 EIQRMAGEFLNNYIFVAIGVVGGACSDVQQTFHELKKFDKRSKLMD-ILQEGADGTIVFV 433

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +   +   S+          IHG      +E  +  FK G  K+LIAT+V
Sbjct: 434 --------ETKRGADFLASILSETKFPTTSIHGDRLQSQREQALRDFKTGHMKVLIATSV 485

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              G+D+ +   +I  +        +H++ GR GR          + P 
Sbjct: 486 AARGLDIKNVKHVINYDMPKTVDDYVHRI-GRTGRVGNRGRATSFFDPN 533


>gi|123442077|ref|YP_001006060.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089038|emb|CAL11856.1| ATP-dependent RNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 460

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 175/456 (38%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + ++  T  Q +A+  IL     +       +   GSGKT    I +   +  G   
Sbjct: 19  LNELGYTEMTPVQAAALPAILNGQDVR------AKAKTGSGKTAAFGIGLLDKIAVGEFV 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  + TQ I +  + G  P  H+  +L        HI++
Sbjct: 73  TQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHA----PHIVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L+L  + +        R+       A   ++    P  +TL+ ++ 
Sbjct: 129 GTPGRIQEHLRKKTLVLDDL-KILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I +I+ +   R+P+   +   +     IE++    +  K+   +   +   +    
Sbjct: 188 YPAGIEQISAR-VQRQPVNVEVDDGDEAP-AIEQVFFETTREKRLPLLISVLSHYQPASC 245

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +      E    S+  +HG +   D++ V+  F N +C++L+AT V   G
Sbjct: 246 VVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL--- 611
           +D+ D  +++           +H++ GR GR       + L  P     ++     L   
Sbjct: 306 LDIKDLELVVNFELAFDPEVHVHRI-GRTGRAGMSGLAVSLCTPQEMTRAHAIEDYLQMK 364

Query: 612 ----------KNTEDGFLIAEEDL--------KQRKEGEILG--IKQSGMPKFLIAQPEL 651
                     ++           L        K R   +ILG    ++G+    + + ++
Sbjct: 365 LKWTPAEQVSRSANTLLEPEMVTLCIDGGRKAKIR-PSDILGALTGEAGLTAADVGKIDM 423

Query: 652 H--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
               + + I +  AK  L Q      ++G++ +  L
Sbjct: 424 FPVHAYVAIRKASAKRALQQL-QQGKIKGKNCKARL 458


>gi|153947047|ref|YP_001401319.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis IP
           31758]
 gi|170024671|ref|YP_001721176.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis YPIII]
 gi|152958542|gb|ABS46003.1| ATP-independent RNA helicase DbpA [Yersinia pseudotuberculosis IP
           31758]
 gi|169751205|gb|ACA68723.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 460

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 87/456 (19%), Positives = 178/456 (39%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + ++  T  Q + +  IL     +       +   GSGKT    I +   +  G   
Sbjct: 19  LNELGYTEMTPVQAAVLPAILNGQDVR------AKAKTGSGKTAAFGIGLLDKIAVGEFV 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  + TQ I +  + G  P  H+  +L        HI++
Sbjct: 73  TQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHA----PHIVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L+L  + +        R+     + A   ++    P  +TL+ ++ 
Sbjct: 129 GTPGRIQEHLRKKTLVLDEL-KTLVLDEADRMLDMGFSDAIDDVIAYTPPQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I +I+ +   R+P+   +   +  +  IE++    +  K+   +   +   +    
Sbjct: 188 YPSGIEQISAR-VQRQPLNVEVGDTDE-EPAIEQVFFETTREKRLPLLISVLSHYQPASC 245

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +      E    S+  +HG +   D++ V+  F N +C++L+AT V   G
Sbjct: 246 VVFCNTKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL--- 611
           +D+ D  ++I           +H++ GR GR       + L  P     ++T    L   
Sbjct: 306 LDIKDLELVINFELAFDPEIHVHRI-GRTGRAGMSGLAVSLCTPQEMVRAHTIEDYLQIK 364

Query: 612 ----------KNTEDGFLIAEEDL--------KQRKEGEILG--IKQSGMPKFLIAQPEL 651
                     ++T          L        K R  G+ILG     +G+    + + ++
Sbjct: 365 LKWTPAEQVSRSTNIMLEPEMVTLCIDGGRKAKIR-PGDILGALTGDAGLTAADVGKIDM 423

Query: 652 H--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
               + + I +  AK  L Q      ++G++ +  L
Sbjct: 424 FPVHAYVAIRKASAKRALQQL-QQGKIKGKNCKARL 458


>gi|328948732|ref|YP_004366069.1| DEAD/DEAH box helicase [Treponema succinifaciens DSM 2489]
 gi|328449056|gb|AEB14772.1| DEAD/DEAH box helicase domain protein [Treponema succinifaciens DSM
           2489]
          Length = 699

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 125/347 (36%), Gaps = 37/347 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q  AI  +L           I +   G+GKT    + +   +       +A+I+ P
Sbjct: 58  PSPIQVLAIPRLLNG-----DANVIAKARTGTGKTAAFGLPLVQDLREESDHVRAIILEP 112

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q    +  +T        ++ G      + +AL R       I++GT    QD 
Sbjct: 113 TRELAMQTATEMASFTTGKYPRTAVVYGGASMGEQMRALRR----GVEIVVGTPGRVQDL 168

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           I    L        IL   DE    G  + ++   +               R L+ ++  
Sbjct: 169 IDRGVLDISKIDYFILDEGDEMLDMGFIEDIENIFECANQDC---------RVLLFSATV 219

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--- 498
             +I KI ++  G +              +IE+   V+ E +K   +   I+   +    
Sbjct: 220 PKEILKIAQRFMG-EYEIVEEEGFEEEPLLIEQKYWVMRESEKVDALVRLIDISPDFFGL 278

Query: 499 ---NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +S  +  +   +      A +HG +    +E ++  F++   ++L+AT V   GI
Sbjct: 279 VFVQRKSDADYVSKSLDERGYEAAALHGDIPQGQREKILARFRSKKTRILVATDVAARGI 338

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           D+   + ++       G   +H++ GR GR       +    P  ++
Sbjct: 339 DIEGVTHVVNYELPFDGPTYVHRI-GRTGRAGAAGMAVTFVKPEETR 384


>gi|297833410|ref|XP_002884587.1| hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330427|gb|EFH60846.1| hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1097

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 147/388 (37%), Gaps = 45/388 (11%)

Query: 263 QKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--- 319
           + +    P SPT  Q       LQ          +     GSGKTL  LI     +    
Sbjct: 450 ELLSAGFP-SPTPIQAQTWPIALQSRD------IVAIAKTGSGKTLGYLIPAFILLRHCR 502

Query: 320 ----AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +I+AP   LA Q  +   ++ ++++I    + G  P+  + K LER     
Sbjct: 503 NDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELER----G 558

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLL 425
           A I++ T     D ++  K        L+L   D     G + +++    + +     L+
Sbjct: 559 ADIVVATPGRLNDILEMKKIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEISPRRQTLM 618

Query: 426 MTATPIPRTL-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVL 479
            TAT           +L +   ++I K+ E  A +   + V ++P    +  +E++    
Sbjct: 619 YTATWPKEVRKIASDLLVNPVQVNIGKVDELAANKAITQYVEVVPQMEKERRLEQILRSQ 678

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             G K    C        S  R       S+  HF + +  IHG  +  +++ V+  F++
Sbjct: 679 ERGSKVIIFC--------STKRLCDHLARSVGRHFGAVV--IHGDKTQGERDWVLSQFRS 728

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +LIAT V   G+D+ D  ++I  +        +H++ GR        SCI   +  
Sbjct: 729 GKSCILIATDVAARGLDIKDIRVVITYDFPTGVEDYVHRI-GRTRSSWCNWSCIHFLYRA 787

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
             +     + VL+           D+  
Sbjct: 788 RLEVRTEMIKVLEGANQQLPPQVRDIAM 815


>gi|296119482|ref|ZP_06838040.1| putative cold shock DEAD-box protein A [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967365|gb|EFG80632.1| putative cold shock DEAD-box protein A [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 658

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 79/399 (19%), Positives = 147/399 (36%), Gaps = 43/399 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q   I  +++          +     G+GKT    + + + ++      QA+++A
Sbjct: 82  TPSPIQAQTIPILMEGRDV------VGLAQTGTGKTAAFALPVLSQIDVNARHPQALVLA 135

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  + +  +   I V  I G      +   L R     A II+GT     
Sbjct: 136 PTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRR----GAQIIVGTPGRVI 191

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRTL 435
           D +        Q   L+L   DE    G Q+ +   L        V L +AT     R L
Sbjct: 192 DHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILADTPEEKQVALFSATMPNSIRRL 251

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L       +  +      IK   +      ++    +++      A  +  + + +
Sbjct: 252 SKKYLNSPAEVTVKSEQRTNDNIKQRFLLTAHRAKLDAFTRILEVTDYDAMIVFCRTKHE 311

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E       E    L +   ++ AI +G ++   +E  +D  K+G   +L+AT V   G+
Sbjct: 312 TE-------EVAEKLRDAGYNAAAI-NGDIAQNQRERTVDQLKDGRLDILVATDVAARGL 363

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   + ++  +  +   + +H++ GR GR       IL   P   +   +   V     
Sbjct: 364 DVDRITHVVNFDIPNDTESYVHRI-GRTGRAGRTGEAILFVTPRERRMLRSIERVTNARL 422

Query: 616 DGFLIAEED--LKQRKEG------EILGIKQSGMPKFLI 646
           +   +   D    +RKE       E+LG  Q  + + L+
Sbjct: 423 EEMELPTVDEVNAKRKENFASQITEVLGDGQMELFRGLV 461


>gi|167042639|gb|ABZ07361.1| putative DEAD/DEAH box helicase [uncultured marine crenarchaeote
           HF4000_ANIW133K13]
          Length = 430

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 128/334 (38%), Gaps = 22/334 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQAVIMAP 329
            P   QE AI  +L           I Q   G+GKT    + M   V    G Q +IMAP
Sbjct: 24  KPFPIQERAIPVLLDG------NDVIGQAHTGTGKTAAFALPMIQLVVKNQGIQGIIMAP 77

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q    IK++ +NT I    I G      +  AL +    +  II+ T     D 
Sbjct: 78  TRELALQITSEIKRFAKNTGITTATIYGGQSMGIQLDALRK----KPEIIVATPGRLIDH 133

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL-VLTSLGDIDISKI 448
           ++   + L  V           L +        +L +  TP  RT  + ++    +I ++
Sbjct: 134 LKRGTIKLNNVKHVVLDEADIMLDMGFIEDIEFILDL--TPEERTTSLWSATMPPEIIRL 191

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI-----EEKKESNFRSV 503
            E    + P + ++         I++  +++ + +K+ ++   I     +     + +  
Sbjct: 192 AETNM-KSPKRILVDSDELSCAGIDQSFLIIKDREKSKYLLDFIHGNIGQCIVFCSTKIR 250

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
                 L      S+  + G MS   +ES M  F+     +L+AT V   GID+   +++
Sbjct: 251 TRDVAKLLYKSGESVVSVEGDMSQHRRESSMSKFRKSNANILVATDVAARGIDIPTVALV 310

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           I  +  +  +   H++ GR  R       I +  
Sbjct: 311 INYDIPNRDMVYFHRI-GRTARAGAKGRAITMVS 343


>gi|322391693|ref|ZP_08065161.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
 gi|321145504|gb|EFX40897.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
          Length = 523

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 132/363 (36%), Gaps = 34/363 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +   L L  V        DE    G        +++       LL +AT     + + + 
Sbjct: 135 KRKALKLQHVETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + +    KI  K    + +    I +   ++     +++  E  +   +  +       
Sbjct: 195 FMKEPKHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+ 
Sbjct: 249 --KRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    I    P          ++ K    G 
Sbjct: 307 GVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGL 365

Query: 619 LIA 621
             A
Sbjct: 366 KPA 368


>gi|282899322|ref|ZP_06307291.1| DEAD/DEAH box helicase-like protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195779|gb|EFA70707.1| DEAD/DEAH box helicase-like protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 497

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 78/351 (22%), Positives = 136/351 (38%), Gaps = 38/351 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L N+ F+ PT  Q  AI  +L           + Q   G+GKT    + +   ++     
Sbjct: 19  LENMGFTTPTNIQTQAIPQLLAGRDV------VGQSQTGTGKTAAFSLPILERLDPNKRA 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q ++ I ++  ++++ V  I G      +   L+R      H+++G
Sbjct: 73  VQALVLTPTRELAMQVHDAISQFMGDSELRVLAIYGGQSIDRQMIQLKR----GVHVVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATPI 431
           T     D ++   L L  V        DE    G    +   L+Q        L +AT  
Sbjct: 129 TPGRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPQNRQTALFSATMP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTV--IIPINRIDEVIERLKVVLSEGKKAYW 487
           P  R LV   L       + +  A    I  V  +IP +       +  + + + + A  
Sbjct: 189 PSIRQLVNKFLNSPVTVTVEQPKATPTKINQVAYLIPRHWTKAKALQPILEMEDPETALI 248

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        R+  E  N L      S+   HG +S   +E ++  F+N   + ++A
Sbjct: 249 FVRT--------RRTAAELTNQLQSAGH-SVDEYHGDLSQQARERLLTRFRNRQVRWVVA 299

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           T +   G+DV   S +I  +        +H++ GR GR  +  + I L  P
Sbjct: 300 TDIAARGLDVDLLSHVINFDLPDSVETYVHRI-GRTGRAGKEGTAISLVQP 349


>gi|82196760|sp|Q5U526|I4A3A_XENLA RecName: Full=Eukaryotic initiation factor 4A-III-A;
           Short=eIF-4A-III-A; Short=eIF4A-III-A; AltName:
           Full=ATP-dependent RNA helicase DDX48-A; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3-A; AltName:
           Full=DEAD box protein 48-A; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3 A
 gi|54311504|gb|AAH84859.1| Unknown (protein for MGC:85498) [Xenopus laevis]
          Length = 415

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 135/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    +++   ++      QA+I+A
Sbjct: 64  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFCVSVLQCLDIQVRETQALILA 117

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 118 PTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 173

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V L++AT     L +T
Sbjct: 174 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMT 233

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 234 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 286

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 287 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 346

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 347 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGGKGVAINFVKNDDIRILRDIEQYYSTQID 405

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 406 EMPMNVADL 414


>gi|23098064|ref|NP_691530.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
 gi|22776289|dbj|BAC12565.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 495

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 122/349 (34%), Gaps = 35/349 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + F   T  Q   I   L+          I Q   G+GKT    I +   + A    
Sbjct: 17  LEKMGFEEATPIQAETIPHALEGHDV------IGQAQTGTGKTAAFGIPLINKINAKLRK 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +I+AP   LA Q  E I +  +   +    I G  P   + +AL+        I++ 
Sbjct: 71  VQGLIVAPTRELAIQVAEEINRLAKFKSVRALAIYGGQPMDRQIRALKD----GPQIVVA 126

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPI 431
           T     D ++   +        +L   DE    G     R  L         LL +AT  
Sbjct: 127 TPGRLLDHMRRKTIRIDQVHTAVLDEADEMLNMGFIDDIREILKGIPEERQTLLFSATMP 186

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              R +  T + +    K+  K    + I    I    I E  +   +            
Sbjct: 187 KEIRNIATTLMKEPKEVKVKAKEMTVENIDQYFIE---IPEKYKFDTL----NNHLDINS 239

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           P++        + V E    L      S  I HG ++   + SV+  FK G   +L+AT 
Sbjct: 240 PELAIIFARTKKRVDEVAEGLQARGYRSEGI-HGDLTQGKRMSVLKKFKQGRVDVLVATD 298

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           V   G+D+   + +   +      + +H++ GR GR  ++   I    P
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKMGEAISFITP 346


>gi|330822482|ref|XP_003291680.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum]
 gi|325078116|gb|EGC31785.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum]
          Length = 397

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 128/341 (37%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AI  I++          I Q   G+GKT    I     ++      QA+I++
Sbjct: 45  KPSAIQQRAIVPIIKGRDT------IAQAQSGTGKTATFSIGALQCIDVNVRSPQALILS 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  +     ++   + V    G    +   K LE       HI+ GT     D
Sbjct: 99  PTRELAQQIQKVALALSEYMNVQVHACVGGKNMSDDIKKLET----GVHIVSGTPGRVLD 154

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I    L        IL   DE    G QQ++         A  ++L++AT     + +T
Sbjct: 155 MITRKSLSTRHIKMMILDEADEMLSLGFQQQINDVYRYLPEATQIVLVSATLTQDVVTMT 214

Query: 439 SLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I           IK   + + +     E     L +   +  I   +    
Sbjct: 215 EKFMSKPVRILLKRDELTLDGIKQFFVSVEKE----EWKFGTLCDIYDSLTITQAV---I 267

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V++          ++A +HG M   ++E ++ SF++G  ++LI T ++  GID
Sbjct: 268 FCNTKKKVDQLTEKMREANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGID 327

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   S++I  +        LH++ GR GR       I    
Sbjct: 328 VQQVSLVINYDLPIDRENYLHRI-GRSGRFGRKGVAINFVK 367


>gi|289621648|emb|CBI52431.1| unnamed protein product [Sordaria macrospora]
          Length = 730

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 134/386 (34%), Gaps = 53/386 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----------EA 320
            PT  Q +AI   LQ          I     GSGKT   L+ +   +             
Sbjct: 317 EPTPIQRAAIPIALQ------ARDLIGVAVTGSGKTAAFLLPLLVYISELPPLTEYNKND 370

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+I+AP   L QQ     KK+       V  I G      +  AL       A II+
Sbjct: 371 GPYALILAPTRELVQQIESEAKKFATPLGFTVVSIVGGHSLEEQAYALRN----GAEIIV 426

Query: 381 GTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRL-------------------KLTQ 416
            T     D ++     + +    I+DE  R   Q                         +
Sbjct: 427 ATPGRLVDCLERRLLVFSQCCYTIMDEADRMIDQGFEEPLTKILDAMPVTNEKPDTDDAE 486

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                   +       +T++ T+     + +I +K   R  I T+      +D V +R++
Sbjct: 487 NPQLMSRYVDGKDRYRQTMMYTATMPPIVERIAKKYLRRPAIVTIGNAGEAVDTVEQRVE 546

Query: 477 VVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            V  E K+   +   +   +         N +   +      +H   S   +HG  +   
Sbjct: 547 FVAGEDKRKKRLQEILNSGQFKPPIIVFVNIKRNCDMVARDIKHMGFSAVTLHGSKTQEQ 606

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E+ + S +NG   +L+AT +   GIDV D S+++  N      +  H++ GR GR  + 
Sbjct: 607 REAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRI-GRTGRAGKS 665

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTE 615
              I    P  +   Y    ++  + 
Sbjct: 666 GVAITFLGPEDNDVLYDLRQIISKSS 691


>gi|226307581|ref|YP_002767541.1| ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis PR4]
 gi|229493790|ref|ZP_04387568.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
 gi|226186698|dbj|BAH34802.1| probable ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis
           PR4]
 gi|229319289|gb|EEN85132.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
          Length = 591

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 145/386 (37%), Gaps = 35/386 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           ++++ ++ + +      SP+  Q + I  +L+          +     G+GKT    + +
Sbjct: 16  LDIDDRVLKALSDVGYESPSPIQAATIPPLLEGKDV------VGLAQTGTGKTAAFAVPV 69

Query: 315 AAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALER 370
            + ++      QA+++AP   LA Q  E   KY+ +   + V  I G      +   L R
Sbjct: 70  LSRIDTSIKQTQALVLAPTRELALQVAEAFGKYSAHIPGLNVLPIYGGQSYGVQLSGLRR 129

Query: 371 IAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATA 420
                AH+++GT     D ++           L+L   DE  + G Q+ +   L      
Sbjct: 130 ----GAHVVVGTPGRVIDHLEKGTLDLTNLKYLVLDEADEMLKMGFQEDVERILRDTPGD 185

Query: 421 PHVLLMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             V L +AT     R +    L +     +  K +    I    I +    ++    +V+
Sbjct: 186 KQVALFSATMPGSIRRISKQYLNNPVEITVKSKTSTASNITQRYIQVAHQRKLDALTRVL 245

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
             E  +A  I  + ++  E       +    L     S+ AI +G +    +E  +   K
Sbjct: 246 EVEAFEAMIIFVRTKQATE-------DLAEKLRARGHSAAAI-NGDIVQAQRERTIGQLK 297

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           NG   +L+AT V   G+DV   S ++  +  H   + +H++ GR GR       +L   P
Sbjct: 298 NGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRI-GRTGRAGRQGDALLFVAP 356

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEED 624
                  +     +       +   D
Sbjct: 357 RERHLLKSIEKATRQPLAEMQLPSVD 382


>gi|281422527|ref|ZP_06253526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
 gi|281403351|gb|EFB34031.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
          Length = 568

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 129/372 (34%), Gaps = 44/372 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL+          +     G+GKT   L+ + + ++ GG        VIM
Sbjct: 25  TPVQEKCIPEILEGHDV------LGVAQTGTGKTAAYLLPVLSKLDDGGYPKDAINCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +P   LAQQ  + ++ +      +    + G        + L  +  G A ++I T    
Sbjct: 79  SPTRELAQQIDQAMQGFGYYLQGVSSVAVYGGNDGNRYDQELRSLRMG-ADVVIATPGRL 137

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLV 436
              I    +        IL   D     G  + +K            ++ +AT   +   
Sbjct: 138 ISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIKTIASKLPKTCQTIMFSATMPEKIEE 197

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           L      +  +I              + +++  E I++   V  E +K   I    +   
Sbjct: 198 LAKTLLKNPVEIK-------------LAVSKPAEKIKQEAYVCYETQKMTIIKDIFKAGD 244

Query: 497 ESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +  V++  +  +    +   +H  +   +++ VM  FK+G   +L+AT +
Sbjct: 245 LKRVIVFSGSKFKVKQLAASLQQIGVNCGAMHSDLEQAERDDVMFKFKSGQYDVLVATDI 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +  GID+ D  ++I  +  H     +H++ GR  R       I                 
Sbjct: 305 VARGIDIDDIEMVINYDVPHDTEDYVHRI-GRTARANRDGRAITFVSEEDQYWFQQIEKF 363

Query: 611 LKNTEDGFLIAE 622
           L+   D   + E
Sbjct: 364 LEKVVDKMPLPE 375


>gi|146282848|ref|YP_001173001.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri A1501]
 gi|145571053|gb|ABP80159.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri
           A1501]
          Length = 553

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 135/345 (39%), Gaps = 39/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q  AI  IL           I Q   G+GKT    + + + ++      QA+I+A
Sbjct: 28  EPSPIQAQAIPVILGGHD------MIGQAQTGTGKTAAFALPILSKIDPAKREPQALILA 81

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y+ Q   + V  I G  P   + KA+ +     A +I+ T     
Sbjct: 82  PTRELALQVATAFETYSKQMPGVSVVAIYGGAPMGPQLKAIRQ----GAQVIVATPGRLV 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D +            L+L   DE  + G    L++  +A              ++++ ++
Sbjct: 138 DHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPE---------SRQSVLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I  I EK   R+P    I    +    IE+  +++   +K   +   +E +    
Sbjct: 189 TLPHSIRAIAEKHL-REPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLLEVEDFDA 247

Query: 500 FRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             + V          +  E      A ++G ++   +E V++S K+G   +++AT V   
Sbjct: 248 LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GIDV   + +   +  +   + +H++ GR GR       +LL  P
Sbjct: 308 GIDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGREGRALLLVTP 351


>gi|188581754|ref|YP_001925199.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179345252|gb|ACB80664.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 506

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 128/342 (37%), Gaps = 27/342 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           +PT  Q  A+   ++                G+GKT    + +   +          G +
Sbjct: 24  TPTPIQAQAVPPAMEGRD------LCGIAQTGTGKTAAFALPILHRLSLENRRAPRRGCR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++++P   LA Q  E    Y ++      ++ G +    + +A+         I++ T 
Sbjct: 78  VLVLSPTRELASQIAESFSDYGRHLPYTNTVVFGGVNINRQERAIAP----GVDILVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    L L  V+        Q L L        ++ M      ++L  ++    
Sbjct: 134 GRLIDLVDRRALTLDGVEILVLDEADQMLDLGFIHALKRIVKMLPAR-RQSLFFSATMPK 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------E 497
           +I+ + ++     P++  + P+    E +++  +    G K   +   + + K       
Sbjct: 193 NIAGLADQYLT-NPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVLRDPKIERVLVF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   +R     +      A IHG  S   +E  + +F++G+C++L+AT +   GIDV
Sbjct: 252 TRTKHGADRVVRGLDKAGIVGAAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGIDV 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              + ++  +  +   + +H++ GR  R       I   +  
Sbjct: 312 EGVTHVVNYDLPNVPESYVHRI-GRTARAGAEGMAISFCNDE 352


>gi|332798288|ref|YP_004459787.1| DEAD/DEAH box helicase domain-containing protein [Tepidanaerobacter
           sp. Re1]
 gi|332696023|gb|AEE90480.1| DEAD/DEAH box helicase domain protein [Tepidanaerobacter sp. Re1]
          Length = 529

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 132/348 (37%), Gaps = 36/348 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           + ++ F   T  Q  AI  I +          I Q   G+GKT    + +   ++     
Sbjct: 19  INDMGFEEATPIQSQAIPYIYEGRDV------IGQAQTGTGKTAAFGLPILDMIDTDDKN 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+ P   LA Q  E +K  ++    + +  + G  P   +  AL+R       III
Sbjct: 73  QQAIILCPTRELAIQVAEELKALSKYKEGMKILPVYGGQPIERQIHALKR----GVQIII 128

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++ + L        +L   DE    G ++ +   L     A   L+ +AT 
Sbjct: 129 GTPGRVMDHMRRHTLKLQNTKIVVLDEADEMLDMGFREDIEKILEDTPKARQTLMFSATI 188

Query: 430 PIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           P P   L    L +  + K+  K      ++     +   D+V    +++         +
Sbjct: 189 PKPILELAERYLNNPQLIKVVHKELTVPSVEQYYFEVKERDKVEALSRLIDFYNPNLALV 248

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +  V+      +    S   +HG MS   ++ VM  FKNGT  +L+AT
Sbjct: 249 F--------CNTKKRVDELMEQLQARGYSADGLHGDMSQSQRDRVMTKFKNGTIDILVAT 300

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            V   G+DV D  +++  +        +H++ GR GR           
Sbjct: 301 DVAARGLDVDDVDVVVNFDVPQNDEYYVHRI-GRTGRAGRSGKAFTFV 347


>gi|255713670|ref|XP_002553117.1| KLTH0D09328p [Lachancea thermotolerans]
 gi|238934497|emb|CAR22679.1| KLTH0D09328p [Lachancea thermotolerans]
          Length = 551

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 73/368 (19%), Positives = 133/368 (36%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           I     GSGKTL   +     + A        G  
Sbjct: 133 KPTGIQCQGWPMALSGRD------MIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPI 186

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q      K+ ++++I    + G +P+ H+ + L R     A I+I T 
Sbjct: 187 VLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGVPRGHQIRELTR----GAEIVIATP 242

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 243 GRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 302

Query: 433 -RTLVLTSLGDIDISKITEKP----AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            + L    L D     +             I  V+  + + D +++ L+    +      
Sbjct: 303 VQQLARDYLHDPIQVNVGSLELAASHNIAQIVEVVSDMEKRDRLLKHLETASEDKDSKIL 362

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I         S  R+  E    L +    ++AI HG  +  +++ V+  F+ G   +++A
Sbjct: 363 IF-------ASTKRTCDEITRYLRQDGWPALAI-HGDKAQNERDWVLQEFRTGNSPIMVA 414

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV   + +I  +        +H++ GR GR     + I  +           
Sbjct: 415 TDVAARGIDVKGINFVINYDMPGNIEDYVHRI-GRTGRAGATGTAISFFTEANKGMGAQL 473

Query: 608 LSVLKNTE 615
           +S+++   
Sbjct: 474 ISIMREAN 481


>gi|162447374|ref|YP_001620506.1| ATP-dependent RNA helicase, DEAD box containing [Acholeplasma
           laidlawii PG-8A]
 gi|161985481|gb|ABX81130.1| ATP-dependent RNA helicase, superfamily II [Acholeplasma laidlawii
           PG-8A]
          Length = 448

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 126/363 (34%), Gaps = 44/363 (12%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +  QK L    +  PT  QE AI  +L           +     G+GKT    I +   +
Sbjct: 10  ERIQKALTLSGYEAPTAIQEQAIPILLSGQD------LLGSAQTGTGKTAAFAIPILQKI 63

Query: 319 EAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                       QA+I+ P   LA Q +E +K Y +   II   I G + Q  + +AL+R
Sbjct: 64  YETKEHKAPRKVQALILTPTRELALQIHENVKIYAKYLNIISTTIYGGVSQKRQEEALKR 123

Query: 371 IAHGQAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPH 422
                  ++I T     D +            L+L   D+    G  + +          
Sbjct: 124 ----GVDVVIATPGRLLDLMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDK---- 175

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
                 TP  R  +L S       ++  K     P +  + P+ +  + I +   ++++ 
Sbjct: 176 ------TPKKRQTMLFSATMPKQIEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNKA 229

Query: 483 KKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            K   +   I              +    +      +       IHG  S   +E  + +
Sbjct: 230 NKTLLLIDLIYTLNMKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALAN 289

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK G  K+L+AT +   GID+     +I           +H++ GR GR       + L 
Sbjct: 290 FKKGKTKILVATDIAARGIDIEALDYVINFELPEVPETYIHRI-GRTGRAGLSGMALSLV 348

Query: 597 HPP 599
            P 
Sbjct: 349 DPS 351


>gi|172062287|ref|YP_001809938.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171994804|gb|ACB65722.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 465

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 166/450 (36%), Gaps = 49/450 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  Q +++   L           I Q   GSGKT    +A+ A ++      QA+++ P 
Sbjct: 31  TPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDTRRFDVQAMVLCPT 84

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + +++  +    + V  + G  P   + ++LE      AHI++GT     D 
Sbjct: 85  RELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH----GAHIVVGTPGRIMDH 140

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +    L L  ++        + L +        V  M  T   +TL+ ++     I+K++
Sbjct: 141 LDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTT-RQTLLFSATYPDGIAKLS 199

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSV 503
           ++       K V +     +  I +    ++E ++ + +   +   +        N +  
Sbjct: 200 QQFLRNP--KEVKLEERHDNSKIRQRFYEVAETERLHAVGQLLNHYRPVSTIAFCNTKQQ 257

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
                 +          +HG +   +++ V+  F N +C +L+AT V   G+D+     +
Sbjct: 258 CRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAV 317

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA-- 621
           I  +        +H++ GR GR ++    + L               LK   +   +A  
Sbjct: 318 INVDVTPDPEVHVHRI-GRTGRADQEGWALSLASMDEMGRVGAIEQALKREVEWHPLAEL 376

Query: 622 -----------EEDLKQRK-------EGEILG--IKQSGMPKFLIAQP--ELHDSLLEIA 659
                       E L+           G++LG     +G     I +       + + I 
Sbjct: 377 KPAGNDTLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVTEFSTYVAIE 436

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           R  A+  L +  +   ++G+ +++ L   +
Sbjct: 437 RGVARDALRKL-NAGKIKGKRVKVRLMDEE 465


>gi|91794665|ref|YP_564316.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716667|gb|ABE56593.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 611

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/427 (19%), Positives = 154/427 (36%), Gaps = 57/427 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT  Q ++I  ++           I Q   G+GKT    + +   V+     
Sbjct: 21  LDELGYENPTPIQSASIDPLMAGKD------IIGQAQTGTGKTGAFALPLLNKVDMKINA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    Y ++     V  I G      +  AL+R       +I+
Sbjct: 75  PQILVLAPTRELAVQVAEAFGSYAKHMKGFHVLPIYGGQSMHQQLSALKR----GPQVIV 130

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPI 431
           GT     D ++           L+L   DE  + G       + +       L + +  +
Sbjct: 131 GTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWVLEHKPKDSQLALFSATM 190

Query: 432 PRTL---VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           P  +       L +     I       + I    + +++ +++   ++V+  E  +   I
Sbjct: 191 PEQIKRVAAKHLTNPVNISIAASTTTVESIDQRFVQVSQHNKLEALVRVLEVENTEGVII 250

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +            VE    L     +S + +HG M+   +E  +D  K G   +LIAT
Sbjct: 251 FVRTRNS-------CVELAEKLEARGYAS-SPLHGDMNQQARERAVDQLKRGKLDILIAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV     ++  +  +   A +H++ GR GR       IL      S+      
Sbjct: 303 DVAARGLDVERIGHVVNYDIPYDTEAYVHRI-GRTGRAGRTGMAILFVT---SREMRMLR 358

Query: 609 SVLKNTEDGFL---------IAEEDLKQRKEGEILGIKQSGMPKFLIA-------QPELH 652
           ++ + T              +AE  L   + GE++    +G   F+ +       Q E+ 
Sbjct: 359 TIERATNSRIAPMKVPSPESVAERRLS--RLGELIQETLNGDLDFMKSAVAELCQQLEVD 416

Query: 653 DSLLEIA 659
             LL  A
Sbjct: 417 TDLLAAA 423


>gi|322514213|ref|ZP_08067275.1| superfamily II helicase [Actinobacillus ureae ATCC 25976]
 gi|322119906|gb|EFX91915.1| superfamily II helicase [Actinobacillus ureae ATCC 25976]
          Length = 607

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 87/418 (20%), Positives = 153/418 (36%), Gaps = 48/418 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           P+  Q+  I  +L           +     GSGKT    + + A ++      Q ++MAP
Sbjct: 29  PSPIQQETIPHLLAGRDV------LGMAQTGSGKTAAFSLPLLAQIDPTQHHPQMLVMAP 82

Query: 330 IGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q  +  +++T+N   + V  + G      R     R     + +++GT     D
Sbjct: 83  TRELAIQVADACEQFTKNMKGVRVVTVYGG----QRYDIQLRALKQGSQVVVGTPGRILD 138

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIP-RTLV 436
            I+   L        +L   DE  R G    ++  + +        L +AT P P R + 
Sbjct: 139 HIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRIT 198

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              + D    KI         I      +N   +    L+ +  E   A  I  + +   
Sbjct: 199 RRFMKDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGT 258

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                        L E      A ++G M+   +E  +   K+G   +L+AT V   GID
Sbjct: 259 ID--------ITELCERNGYRAAALNGDMTQQAREQTLAKLKSGRLDILVATDVAARGID 310

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   S+++  +      + +H++ GR GR       +L   P   +       ++K   D
Sbjct: 311 IERISLVVNFDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPID 369

Query: 617 GFLIAEED--LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
              I   +  +++R+E              + AQ E HD  LE  R+  + + T D D
Sbjct: 370 EVAIPNHEILMEKRREK---------FKARVSAQLEHHD--LEKYRELLEDLFTADQD 416


>gi|289668397|ref|ZP_06489472.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 460

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 135/372 (36%), Gaps = 37/372 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q+ AI  +L D         +     G+GKT    + +   +    Q        
Sbjct: 23  TPTAIQQQAIPLVLADHD------LLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPRKP 76

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+ P   LA Q ++ ++ Y++  +I   +I G +   ++  AL R       ++I  
Sbjct: 77  RALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRR----GVDLLIAC 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D I+   + L  ++        + L +    +   +L        +TL+ ++  +
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFE 192

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
            +I ++      R P++  + P N + E I      +   +K   +   + +        
Sbjct: 193 ENIKQLA-LEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLV 251

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   ++     E      A IHG  S   +   +  FK G   +L+AT +   GID
Sbjct: 252 FARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +     +I  +        +H++ GR GR       I L     +K     + +L     
Sbjct: 312 IDQLPKVINYDLPMVAEDYVHRI-GRTGRNGSTGEAISLVAQDEAKLLRQIVRMLG---- 366

Query: 617 GFLIAEEDLKQR 628
                  D++ R
Sbjct: 367 ------RDVEIR 372


>gi|258676573|gb|ACV87294.1| VASA DEAD-box protein [Phallusia mammillata]
          Length = 851

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 146/378 (38%), Gaps = 57/378 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAG--------- 321
           SPT  Q+ ++  IL D         +     GSGKT   L+ +    V  G         
Sbjct: 406 SPTPVQKFSLPIILADRD------LMACAQTGSGKTAAFLLPVLTNLVRTGLASSSFSEK 459

Query: 322 --GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              QA+I+ P   L  Q Y   +K+++ T I   +  G     ++ K L++      H++
Sbjct: 460 QLPQAIIVGPTRELVYQIYLEARKFSRGTIIRPVVAYGGTSTNYQLKELQK----GCHLL 515

Query: 380 IGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           I T     D I   K+ L  V     DE  R         T+         M A     T
Sbjct: 516 IATPGRLMDFINRGKIGLSSVQYIILDEADRMLDMGFE--TEIRKLVDSPGMPAKNERHT 573

Query: 435 LVLTSLGDIDISKITEKP--------------AGRKPIKTVIIPIN---RIDEVIERLKV 477
           L+ ++    +I K+                       +  V++ ++   + +++IE L  
Sbjct: 574 LMFSATFPDEIQKLAHDFLREDFLFLTVGRIGGACSDVTQVVLQVDQGDKRNKLIELLAD 633

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           V   G +       +E K+ ++F +      SL +    + +I HG     ++E  +  F
Sbjct: 634 VADTGSRTLVF---VETKRSADFLAC-----SLCQEGYPTTSI-HGDRLQQEREEALRDF 684

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+G C +L+AT+V   G+D+     ++  +        +H++ GR GR   +      Y 
Sbjct: 685 KSGKCPILVATSVAARGLDIPKVEHVVNYDLPSEVDEYVHRI-GRTGRCGNLGRATSFYD 743

Query: 598 PPLSKN-SYTRLSVLKNT 614
              + + + + + +L ++
Sbjct: 744 DSANASLARSLVKILADS 761


>gi|221126753|ref|XP_002164824.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
 gi|260222162|emb|CBA31453.1| ATP-independent RNA helicase dbpA [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 460

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 92/467 (19%), Positives = 171/467 (36%), Gaps = 71/467 (15%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + F + T  Q +++   L           I Q   GSGKT    + + A +      
Sbjct: 17  LQQLGFDAMTPIQAASLPVALAGKD------LIAQAKTGSGKTAAFALPLLAKLNPRWFA 70

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    I++  +    I V  + G +    +R +LE      AHI++
Sbjct: 71  VQAMVLCPTRELADQVTVEIRRLARAQDNIKVVTLCGGVATRGQRASLEN----GAHIVV 126

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++           L+L   D     G    +    +               
Sbjct: 127 GTPGRIMDLLEREYLTLEGLNTLVLDEADRMLDMGFFDDIVTVARQCPKE---------R 177

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I K+ ++         V  P+   D  IE+    +    +   +C  +
Sbjct: 178 QTLLFSATYPEGIEKLAKQFMQDPQQIKVEAPV--ADNTIEQRFFEVDRESRFSAVCSIL 235

Query: 493 EEKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              +        +  +   E  + L      + A+ HG +   +++ V+  F N +C +L
Sbjct: 236 NHFRPVSTIAFCNTKQQCNELVDKLVTDGFVAQAL-HGDLDQRERDQVLAQFANRSCSVL 294

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL----- 600
           +AT V   G+DV +  I+I  +        +H++ GR GR  E    + L          
Sbjct: 295 VATDVASRGLDVKELDIVINVDITPDPEVHVHRI-GRTGRAGEKGLAVSLASMREMGAVG 353

Query: 601 -------SKNSYTRLSVLKNTEDG--------FLIAEEDLKQRKEGEILG--IKQSGMPK 643
                  + + + +L  L  T  G          IA    ++ + G++LG      G P 
Sbjct: 354 KIEQYQNTPSVWHKLDELTPTGSGRLLPPMVTVQIAGGRKEKIRPGDVLGALTNTEGGPA 413

Query: 644 FLIAQP-----ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           F   Q          + + +AR  A+    +  +   V+G+S+R  L
Sbjct: 414 FTREQIGKIQVTEFCTFVGVARDVAQAACNKL-NAGRVKGKSVRARL 459


>gi|319788058|ref|YP_004147533.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466570|gb|ADV28302.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 463

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 135/373 (36%), Gaps = 38/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q+ AI   L           +     G+GKT    + +   +    Q        
Sbjct: 23  TPTPIQQQAIPLALAGHD------LLAGAQTGTGKTAAFGLPLLQYLGTEPQKVGPGPRK 76

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+++ P   LA Q ++ ++ Y++  +I   +I G +   ++  +L R       ++I 
Sbjct: 77  PRALVLTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDSLRR----GVDMVIA 132

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
                 D I+   + L  ++        + L +    +   +L        +TL+ ++  
Sbjct: 133 CPGRLIDHIERRSIDLSGIEVLILDEADRMLDMGFLPSIKRILAKLPKQNRQTLLFSATF 192

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP------QIEEK 495
              I ++      R P +  + P N + E I      +   +K   +        +++  
Sbjct: 193 PESIKQLA-MEFMRNPREVQVTPQNTVAETIAHRVHPVDTARKRELLLHLLGQDARVQTL 251

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  +   ++  +  E      A IHG  S   +   +  FK+G  K+L+AT +   GI
Sbjct: 252 VFAKTKHGSDKLATHLEKAGIQAAAIHGNKSQGQRLRALGDFKSGKVKVLVATDIAARGI 311

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+     +I  +        +H++ GR GR       + L     +K     + +L    
Sbjct: 312 DIDQLPRVINYDLPMVAEDYVHRI-GRTGRNGANGEALSLVSQEDAKYLRQIVRMLG--- 367

Query: 616 DGFLIAEEDLKQR 628
                   D++ R
Sbjct: 368 -------RDMEIR 373


>gi|258570243|ref|XP_002543925.1| hypothetical protein UREG_03442 [Uncinocarpus reesii 1704]
 gi|237904195|gb|EEP78596.1| hypothetical protein UREG_03442 [Uncinocarpus reesii 1704]
          Length = 1206

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 82/426 (19%), Positives = 149/426 (34%), Gaps = 55/426 (12%)

Query: 265 ILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ++  + +  PT  Q  AI  I+           I     GSGKT+  L+ M   ++    
Sbjct: 584 VIHKLGYDQPTSIQAQAIPAIMSGRDV------IGVAKTGSGKTIAFLLPMFRHIKDQRP 637

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   ++M P   LA Q ++  K + +   +      G  P   +   L+R     
Sbjct: 638 LENMEGPVGLVMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKR----G 693

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     D +           ++  V++DE  R           K          
Sbjct: 694 AEIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIIGNIR---- 749

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  ++++ ++    ++  +  K    KP++ ++   + +   I ++  V  E  K   
Sbjct: 750 --PSRQSVLFSATFPRNMEALARKTLT-KPVEIIVGGRSVVAPEITQIVEVRPENTKFVR 806

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  + L             IHG    +D++S +D
Sbjct: 807 LLELLGNLYSDDANEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTID 866

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    ++I  +A +     +H+  GR GR     + +  
Sbjct: 867 DFKAGIFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 925

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIA---EED--LKQRKEGEILGIKQSGM--PKFLIAQ 648
                 + S      LK +      A     D  L++ K G+      SG          
Sbjct: 926 LTEEQERYSVDIAKALKQSGQPVPDAVQKMVDAFLEKVKSGK-EKASASGFGGKGLERLD 984

Query: 649 PELHDS 654
            E   +
Sbjct: 985 QERDAA 990


>gi|170099095|ref|XP_001880766.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644291|gb|EDR08541.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 498

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 73/366 (19%), Positives = 135/366 (36%), Gaps = 44/366 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q  A    L           +     GSGKT+   +     + A        G  
Sbjct: 83  APTPIQCQAWPMALTGRDV------VAIAQTGSGKTISFALPAMLHINAQPLLAPGDGPI 136

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LA Q  +   K+  N++I    I G  P+  + + L+R       I+I T 
Sbjct: 137 ALVLAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRDLQR----GVEIVIATP 192

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D ++  K        L++   D     G + +++    Q       L+ +AT    
Sbjct: 193 GRLIDMLETQKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLMFSATWPKD 252

Query: 434 TLVLTSLGDIDISKIT------EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              L +    D+ ++             + I  V     + +++I+ L  + +E  K   
Sbjct: 253 VQKLANDFLRDMIQVNIGSMELTANHNIQQIVEVCSDFEKRNKLIKHLDQISAENAKVLI 312

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        R   +    L +    ++AI HG     +++ V+  FK G   +LIA
Sbjct: 313 FVAT--------KRVADDITKYLRQDGWPALAI-HGDKEQRERDWVLGEFKAGRSPILIA 363

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +  +     +H++ GR GR          +    +K++   
Sbjct: 364 TDVASRGLDVKDVGYVINYDFPNNCEDYIHRI-GRTGRAGMKGISYTYFTTDNAKSAREL 422

Query: 608 LSVLKN 613
           + +L+ 
Sbjct: 423 IGILRE 428


>gi|91787410|ref|YP_548362.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91696635|gb|ABE43464.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 492

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 126/364 (34%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
           + T  QE AI  +LQ          +     G+GKT    + +   +             
Sbjct: 25  TMTPIQEQAIPVVLQGKDV------MGAAQTGTGKTAAFSLPLLQRMLKHENASTSPARH 78

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   LA Q  E +K Y ++T +   ++ G M    +   L++       +++
Sbjct: 79  PVRALVLLPTRELAVQVAEQVKLYAKHTNLRSAVVFGGMDMKPQTLELKQ----GVEVLV 134

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFG-----VQQRLKLTQKATAPHVLLMTAT- 429
            T     D I+    +L  V     DE  R          +  L+        LL +AT 
Sbjct: 135 ATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRITLLFSATF 194

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  + L  + L D    ++    A    ++     +   D+     +++   G K  ++
Sbjct: 195 SPEIKRLASSYLQDPVTIEVARSNATASTVEQHFYSVGADDKRRALHQILKERGMKQAFV 254

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E        +HG  S  ++   +D+FK G   LL+ T
Sbjct: 255 FV--------NSKLGCARLARSLEREGLKTTALHGDKSQDERLKALDAFKKGEVDLLVCT 306

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D   +   +        +H++ GR GR       +        +      
Sbjct: 307 DVAARGLDIKDVPAVFNFDVPFNAEDYVHRI-GRTGRAGASGLAVSFVASSDQRLVADIE 365

Query: 609 SVLK 612
            ++K
Sbjct: 366 KLIK 369


>gi|322788219|gb|EFZ14001.1| hypothetical protein SINV_14366 [Solenopsis invicta]
          Length = 423

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 134/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ +IK I++          I Q   G+GKT    IA+  +++      Q ++++
Sbjct: 72  KPSAIQQRSIKPIMKGRDV------IAQAQSGTGKTATFSIAILQSLDTQVRETQVLVLS 125

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        +      G        + L+       H++ GT     D
Sbjct: 126 PTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQ----HVVSGTPGRVFD 181

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+           L+L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 182 MIKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMT 241

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 242 SKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 294

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           ++  +HG M   +++++M  F++G  ++LI T V   GID
Sbjct: 295 FCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGQSRVLITTDVWARGID 354

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S++I  +  +     +H++ GR GR       I        +             D
Sbjct: 355 VQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVSINFVKTDDIRILRDIEQYYSTQID 413

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 414 EMPMNVADL 422


>gi|319648379|ref|ZP_08002595.1| DeaD protein [Bacillus sp. BT1B_CT2]
 gi|317389458|gb|EFV70269.1| DeaD protein [Bacillus sp. BT1B_CT2]
          Length = 481

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 136/371 (36%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L ++ +  PT  Q   I   L+      +   +++   GSGKT    I +    E     
Sbjct: 19  LDHLGYKHPTAVQSEVIPAALK------KRDVVVKSRTGSGKTAAFGIPLCELTEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E +    +  +I    + G      ++  L++    + HI++G
Sbjct: 73  PQALILTPTRELAAQVKEDLTNIGRYKRIKAAAVYGKSSFERQKTELKQ----KCHIVVG 128

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+           L++   D+    G   ++   +         +L +AT  
Sbjct: 129 TPGRVLDHIEKGTFPLEKLKYLVIDEADKMLNMGFIDQVGAIIRHLPEERLTMLFSATFP 188

Query: 432 PRTLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L+     D  KI  K  G     I+  +I ++  D     + +++ E   +  + 
Sbjct: 189 EDVEQLSLQYMKDPLKIEMKAGGTTTADIEHQLIIVDENDPFSLLVDLIIVENPDSCIVF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E+        V              A IHG M   D+ +VM+ F+ G  + LIAT 
Sbjct: 249 CRTQEQ--------VNELQRRLAGLGYPCAKIHGGMPQEDRFAVMNRFRRGAFRYLIATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I         + +H+  GR GR       I L  P           
Sbjct: 301 VAARGIDIENITHVINYELPLDQESYVHR-TGRTGRAGSRGKAITLASPREKGMIADIED 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFPI 365


>gi|152995016|ref|YP_001339851.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150835940|gb|ABR69916.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 463

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 130/346 (37%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
            P+  Q  AI  IL+          +     G+GKT    + +   +  G        +A
Sbjct: 27  EPSAIQAQAIPAILEGQDV------MAAAQTGTGKTAGFTLPLLEILSKGENAQSNQVRA 80

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +K Y Q+  +   ++ G +    +  AL R     A I+I T  
Sbjct: 81  LVLTPTRELAAQVAESVKNYGQHLSLKSTVVFGGVKINPQMMALRR----GADILIATPG 136

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ KL ++++DE  R      +   +K      +L       + L+ ++
Sbjct: 137 RMMDLYNQKAVRFDKLEVLVLDEADRMLDMGFIHDIKK------ILAILPKKRQNLLFSA 190

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I ++  K     PI+  + P N     +E+    + + +K   +   I + +   
Sbjct: 191 TFSPEIRQLA-KGLVNNPIEISVTPRNATAVSVEQWLHPVDKKRKTELLIQLIADGRWDQ 249

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    +     E      + IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 250 ALVFSRTKHGANKITKQLEDAGIRASAIHGNKSQGARTRALADFKEGRIRILVATDIAAR 309

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+     ++  +        +H++ GR GR       I L    
Sbjct: 310 GLDIEQLPHVVNFDLPDVAEDYVHRI-GRTGRAGATGKAISLVAAD 354


>gi|82751683|ref|YP_417424.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
 gi|123548216|sp|Q2YUH3|Y1965_STAAB RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAB1965c
 gi|82657214|emb|CAI81654.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
          Length = 506

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 135/350 (38%), Gaps = 37/350 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L ++ F  PT  Q+ +I   LQ +        + Q   G+GKT    I +   V  + G 
Sbjct: 17  LESMGFKEPTPIQKDSIPYALQGID------ILGQAQTGTGKTGAFGIPLIEKVVWKQGV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q++I+AP   LA Q  E ++++++   + V  + G MP   + KAL++       I++GT
Sbjct: 71  QSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK----GPQIVVGT 126

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +          + LIL   DE    G    ++                   +T
Sbjct: 127 PGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ--------RQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I  + ++   + P     +     D  IE    ++ E +K       ++ 
Sbjct: 179 MLFSATMPKAIQALVQQFM-KSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +      F     R + L     S       +HG ++   +  V+  FKN    +L+AT
Sbjct: 238 HQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|148263462|ref|YP_001230168.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
 gi|146396962|gb|ABQ25595.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
          Length = 474

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 86/445 (19%), Positives = 169/445 (37%), Gaps = 63/445 (14%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ ++  T  Q  ++  IL           I +   GSGKT    I + + ++A    
Sbjct: 30  LASLGYAEMTPIQAHSLPLILAGKDV------IAKAKTGSGKTAAFGIGLLSHLDATSSR 83

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  + T  I V  + G +P   +  +LE      AHI++
Sbjct: 84  VQALVLCPTRELADQVGKELRRLARFTDNIKVLTLCGGVPFGPQLGSLEH----GAHIVV 139

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATP 430
           GT     D ++   L L  +        D     G Q  +   +         LL +AT 
Sbjct: 140 GTPGRILDHLRRGSLDLTCLQTLVLDEADRMLDMGFQDEISALIDATPKKKQTLLFSATY 199

Query: 431 IPRTLVLTSLGDIDISKIT-EKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWI 488
                 +++    +   ++ ++      I+ V+  +++ +      +++     +     
Sbjct: 200 PEAIAAMSATIQHEPVAVSVDEVHDESAIEQVLYEVDKEERTEAVARILGHYRPESTLVF 259

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C    E          E  ++L +   S++AI HG +   +++ V+  F N +  +L+AT
Sbjct: 260 CNTKIE--------CQEVADALVKRGFSALAI-HGDLEQRERDQVLVRFANKSVSVLVAT 310

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ + + +I           +H++ GR GR  E    + L     S+      
Sbjct: 311 DVAARGLDIKELAAVINYELSRDPEIHIHRI-GRTGRAGETGLGLSLVTAQESRRVQAIE 369

Query: 609 SVL-----KNTEDGFLIA--------EEDL--------KQRKEGEILG--IKQSGMPKFL 645
           + L     +       IA           L        K R  G+ILG      G+    
Sbjct: 370 TALGTPIPRGELASLTIAAGGPLAPPMVTLCIDGGRKNKMR-PGDILGALTGAGGIAASE 428

Query: 646 IAQPELHD--SLLEIARKDAKHILT 668
           + + ++ D  + + I R  A   L+
Sbjct: 429 VGKIDVFDFHAYVAIVRSSADQALS 453


>gi|328771122|gb|EGF81162.1| hypothetical protein BATDEDRAFT_10391 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 521

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 73/406 (17%), Positives = 140/406 (34%), Gaps = 38/406 (9%)

Query: 247 FKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
                      +  +   I+++    PT  Q  A+   L           I     GSGK
Sbjct: 64  RPCISFAHFGFDESLLNCIIKHGYTEPTGIQRQAVPVALSGHD------LIGIAQTGSGK 117

Query: 307 TLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITG 357
           T   L  M   +          G   +++AP   LA Q Y   KK+++    + V ++ G
Sbjct: 118 TAAFLWPMLVHLMDQPELERGDGPIGLVLAPTRELAHQIYLEAKKFSKAYQGVRVTVLYG 177

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ 409
            + +  + K L         I++ T     D I+           L+L   D+    G +
Sbjct: 178 GVSKNDQFKELRA----GVEILVATPGRLIDLIKMKATNLTRVTYLVLDEADQMLNLGFE 233

Query: 410 QRLKLT--QKATAPHVLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
            +++            LL +AT   R   LV   L +     I         I  + + +
Sbjct: 234 PQVRSICDHIRPDRQTLLFSATFRKRIEHLVRALLNNPTRISIGNVGQSNSDITQIPVVL 293

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI-AIIHGR 524
                    L   L        +   +  K   +     E  ++L     +S+   +HG 
Sbjct: 294 ENDGVKFGWLTAHLPRLVAQGPVLVFVSRKAGVD-----ELASNLSAAQIASVVGALHGD 348

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +    ++ V+  FK+G  ++L++T V   G+D+     +I  +      + +H++ GR G
Sbjct: 349 LMQAQRDQVLKEFKSGKSRVLVSTDVASRGLDIKGVKTVINYDVSKDIDSYVHRI-GRTG 407

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           R  E  +   L      + +   + +++N       A  +L  +  
Sbjct: 408 RAGEKGTAYTLITMQEDRFASDLVQLMENGNQAPTEALVNLAMQNP 453


>gi|82705769|ref|XP_727104.1| eukaryotic initiation factor 4a-3 [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23482794|gb|EAA18669.1| eukaryotic initiation factor 4a-3 [Plasmodium yoelii yoelii]
          Length = 390

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 126/345 (36%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  IK IL           ILQ   G+GKT V  +     V       Q +I++
Sbjct: 39  KPSAIQQRGIKPILNGRDV------ILQSQSGTGKTCVFAVGALNCVNRNISETQVIILS 92

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q  +          + V    G    +   KAL    +   HII GT      
Sbjct: 93  PTRELAEQTQKVCLALADYIHVTVYCCIGGKKMSEDIKAL----NNGVHIISGTPGRIYH 148

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLT 438
            +           +L++   DE    G ++++    +       ++L +AT     L +T
Sbjct: 149 MLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIVLSSATLPHEVLEIT 208

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK--VVLSEGKKAYWICPQIEE 494
           +    +  KI  K      + IK   + I +     E L          +A   C     
Sbjct: 209 NKFMHNPVKILVKRDELTLEGIKQFFVSIEKEQWKYETLADLYESLTITQAVVFCNT--- 265

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+      +    ++  +H  MS  +++ +M  F+    ++LI+T +   G
Sbjct: 266 ------KLKVDWLAKKMQESNFTVCKMHAGMSQSERDDIMLKFRQCKYRVLISTDIWGRG 319

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +DV + S+++  +  +   + +H++ GR GR       I      
Sbjct: 320 LDVHEVSLVVNYDLPNSRESYIHRI-GRSGRFGRKGVAINFVKND 363


>gi|308498555|ref|XP_003111464.1| hypothetical protein CRE_03767 [Caenorhabditis remanei]
 gi|308241012|gb|EFO84964.1| hypothetical protein CRE_03767 [Caenorhabditis remanei]
          Length = 405

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 75/344 (21%), Positives = 133/344 (38%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ AI  IL+          I Q   G+GKT    I++  +++      QA+I++
Sbjct: 51  KPSAIQQRAIPAILK------ARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILS 104

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 105 PTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQ----HVVSGTPGRVFD 160

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G +++L    +       V+L++AT     L +T
Sbjct: 161 MIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMT 220

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + ++R +   + L  +       Y      +   
Sbjct: 221 SKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDL-------YDTLTITQAVL 273

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+      +    +++ +HG M   D++ VM  F+ GT ++LI+T V   G+D
Sbjct: 274 FCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLD 333

Query: 557 VVDASI---IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   S+   +I  +  +     +H++ GR GR       I    
Sbjct: 334 VPQVSLVSNVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVK 376


>gi|326315975|ref|YP_004233647.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372811|gb|ADX45080.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 491

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 70/381 (18%), Positives = 132/381 (34%), Gaps = 42/381 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
           S T  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 25  SMTPIQAEAIPVVLTGQDV------MGAAQTGTGKTAAFSLPLLQRLLKHENSSTSPARH 78

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   LA Q  + I  Y + T++   ++ G M    +   L++       +++
Sbjct: 79  PVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTLELKK----GVEVLV 134

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFG-----VQQRLKLTQKATAPHVLLMTAT- 429
            T     D I+    +L  V     DE  R          +  L+        LL +AT 
Sbjct: 135 ATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKTRTTLLFSATF 194

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  + L  + L +    ++         ++     +N  D+      V+ + G K  ++
Sbjct: 195 SPEIKRLAGSYLQNPVTIEVARPNETASTVEQRFYSVNDDDKRRAIHHVLRTRGVKQAFV 254

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R +   E      A +HG  S  ++   +D+FK G   LL+ T
Sbjct: 255 FV--------NSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAFKRGEVDLLVCT 306

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D   +   +        +H++ GR GR       + L     ++      
Sbjct: 307 DVAARGLDIKDVPAVFNFDVPFNAEDYVHRI-GRTGRAGASGLAVTLVSSSDARLVADIE 365

Query: 609 SVLKNTEDGFLIAEEDLKQRK 629
            + K   D   +  E+ + R 
Sbjct: 366 KLTKKKIDLEALEVEEDRPRG 386


>gi|170725054|ref|YP_001759080.1| ATP-dependent RNA helicase DbpA [Shewanella woodyi ATCC 51908]
 gi|169810401|gb|ACA84985.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 469

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 82/437 (18%), Positives = 159/437 (36%), Gaps = 57/437 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           S T  Q  ++  IL           I QG  GSGKT    + +   +       Q++++ 
Sbjct: 34  SMTPIQAQSLPAILNGEDV------IGQGKTGSGKTAAFGLGLLHKLNVKRFRIQSLVLC 87

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+   +    I V  + G +P   +  +LE      AHII+GT     
Sbjct: 88  PTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEH----GAHIIVGTPGRII 143

Query: 388 DSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           D +   +L L  V     DE  R      L           ++       +TL+ ++   
Sbjct: 144 DHLSRERLSLEDVNTLVLDEADRMLEMGFLPDL------DYIMAQMPRERQTLLFSATFP 197

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAYWICPQIEEKKE---- 497
             I KI E     +P+   +   +  + + +       ++ ++       ++ + E    
Sbjct: 198 KQIQKIAE-EIMYEPVMVKVTSTHDSNTIDQHFYELESNKDRQKALRLLLLQHRPESAVV 256

Query: 498 -SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +   +   +   +   S+  +HG +   D++  +  F N +  +++AT V   G+D
Sbjct: 257 FCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIMVATDVAARGLD 316

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL----- 611
           +    +++     +     +H++ GR GR     +    Y+             L     
Sbjct: 317 IEALDMVVNYEFAYDTEVHIHRI-GRTGRAGSKGAAYTFYNYEDDYKVKLLEEYLDREIT 375

Query: 612 ------KNTEDGF--LIAEEDLKQ-------RKEGEILG--IKQSGMPKFLIAQPELHD- 653
                 +N  D F        L+         + G+ILG    + G+    + + ++ D 
Sbjct: 376 SEVLPPENLLDTFPTQPKMVTLQIDGGKKNKLRPGDILGGLTGEDGIQGSEVGKIKITDF 435

Query: 654 -SLLEIARKDAKHILTQ 669
            S + + RK AK  L +
Sbjct: 436 RSYVAVDRKVAKRALHK 452


>gi|313668514|ref|YP_004048798.1| ATP-dependent RNA helicase [Neisseria lactamica ST-640]
 gi|313005976|emb|CBN87433.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06]
          Length = 462

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 126/347 (36%), Gaps = 45/347 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L           +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPSALDGRD------IMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIET-------IVEATPSDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEK 495
           ++  D  + K+  K          +I + R+D+   IE   +   + +    +   I   
Sbjct: 188 SATWDGAVGKLARKLTKDP----EVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRD 243

Query: 496 KESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +        +++ E           +   +HG M    +   +   + G CK+L+AT
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|307294408|ref|ZP_07574252.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306880559|gb|EFN11776.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 454

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 66/360 (18%), Positives = 130/360 (36%), Gaps = 37/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI  +L           I     G+GKT   ++ M   +  G       +++
Sbjct: 23  TPTPIQAQAIPPVL------MMKDIIGIAQTGTGKTASFVLPMIDILAHGRARALMPRSL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  +KY +  ++ + ++ G +    + KALE+       ++I T   
Sbjct: 77  ILEPTRELAAQVAENFEKYGKYHKLNMALLIGGVQMGDQLKALEK----GVDVLIATPGR 132

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT--PIPR 433
             D  Q  K        L++   D     G         T+       LL +AT  P+ +
Sbjct: 133 LMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEEICTKLPAQRQTLLFSATMPPVIK 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L    L +    ++         I   ++ ++   +      ++ +E   +  I     
Sbjct: 193 KLADRFLSNPKSIEVARPATASTNITQRLVKVDSRKKREALRAMLEAEDVLSAVIF---- 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N ++ V   N   +        IHG +    + + ++ F+ G+  +L+A+ V   
Sbjct: 249 ----CNRKTTVRDLNKSLQRHGFKSGEIHGDIDQSARIAELERFRAGSVNILVASDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   S +   +A       +H++ GR GR               ++       ++K 
Sbjct: 305 GLDIKGVSHVFNFDAPWHPDDYVHRI-GRTGRAGAKGVAYTFVTADDAEAIDNIQKLIKQ 363


>gi|257426220|ref|ZP_05602635.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428878|ref|ZP_05605272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257431487|ref|ZP_05607860.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257434197|ref|ZP_05610547.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257437110|ref|ZP_05613150.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282914927|ref|ZP_06322707.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|282925469|ref|ZP_06333123.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus C101]
 gi|293508999|ref|ZP_06667786.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510911|ref|ZP_06669610.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293547513|ref|ZP_06672188.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257270925|gb|EEV03098.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257274220|gb|EEV05737.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257277728|gb|EEV08398.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257280836|gb|EEV10981.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257283503|gb|EEV13630.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282312870|gb|EFB43271.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282321130|gb|EFB51461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|290919633|gb|EFD96706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291094703|gb|EFE24975.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466196|gb|EFF08723.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus M809]
          Length = 506

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 135/350 (38%), Gaps = 37/350 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L ++ F  PT  Q+ +I   LQ +        + Q   G+GKT    I +   V  + G 
Sbjct: 17  LESMGFKEPTPIQKDSIPYALQGID------ILGQAQTGTGKTGAFGIPLIEKVLGKQGV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q++I+AP   LA Q  E ++++++   + V  + G MP   + KAL++       I++GT
Sbjct: 71  QSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK----GPQIVVGT 126

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +          + LIL   DE    G    ++                   +T
Sbjct: 127 PGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ--------RQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I  + ++   + P     +     D  IE    ++ E +K       ++ 
Sbjct: 179 MLFSATMPKAIQALVQQFM-KSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +      F     R + L     S       +HG ++   +  V+  FKN    +L+AT
Sbjct: 238 HQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|49484306|ref|YP_041530.1| helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282904748|ref|ZP_06312622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|282906426|ref|ZP_06314277.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282920258|ref|ZP_06327982.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus C427]
 gi|283958860|ref|ZP_06376305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|295428668|ref|ZP_06821294.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|81650664|sp|Q6GEZ3|Y2168_STAAR RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAR2168
 gi|49242435|emb|CAG41149.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282316118|gb|EFB46499.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus C427]
 gi|282330376|gb|EFB59894.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282594781|gb|EFB99758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|283789578|gb|EFC28401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|295127338|gb|EFG56978.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|315193240|gb|EFU23638.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 506

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 135/350 (38%), Gaps = 37/350 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L ++ F  PT  Q+ +I   LQ +        + Q   G+GKT    I +   V  + G 
Sbjct: 17  LESMGFKEPTPIQKDSIPYALQGID------ILGQAQTGTGKTGAFGIPLIEKVVGKQGV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q++I+AP   LA Q  E ++++++   + V  + G MP   + KAL++       I++GT
Sbjct: 71  QSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK----GPQIVVGT 126

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +          + LIL   DE    G    ++                   +T
Sbjct: 127 PGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ--------RQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I  + ++   + P     +     D  IE    ++ E +K       ++ 
Sbjct: 179 MLFSATMPKAIQALVQQFM-KSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +      F     R + L     S       +HG ++   +  V+  FKN    +L+AT
Sbjct: 238 HQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|258577621|ref|XP_002542992.1| hypothetical protein UREG_02508 [Uncinocarpus reesii 1704]
 gi|237903258|gb|EEP77659.1| hypothetical protein UREG_02508 [Uncinocarpus reesii 1704]
          Length = 783

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 133/388 (34%), Gaps = 55/388 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------------ 319
            P+  Q +AI   LQ+         I     GSGKT   L+ +   +             
Sbjct: 365 DPSPIQRAAIPIALQNRD------LIGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEWRK 418

Query: 320 -AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G  A+I+AP   LAQQ     +K+       V  I G      +  +L       A I
Sbjct: 419 SDGPYAIILAPTRELAQQIENEARKFCSPLGFNVVSIVGGHSLEEQSFSLRN----GAEI 474

Query: 379 IIGTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLT--------------- 415
           II T     D I+   L+L           D     G ++ +                  
Sbjct: 475 IIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTDE 534

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT---VIIPINRIDEV 471
            +   A    +       +T++ T+     + +I  K   R  I T   V   ++ +++ 
Sbjct: 535 AEDPRAMSQHVGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIITIGNVGEAVDTVEQR 594

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           +E +       K+   I    E +       N +   +      +    S   +HG  + 
Sbjct: 595 VEFIAGEDKRKKRLADILASGEYRPPIIVFVNIKRNCDAVARDIKQMGFSAVTLHGSKTQ 654

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +E+ + S +NG   +L+AT +   GIDV D S+++  N      +  H++ GR GR  
Sbjct: 655 EQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRI-GRTGRAG 713

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +    I       S   Y    +L  + 
Sbjct: 714 KSGVAITFLGNEDSDVMYDLKQMLMKSS 741


>gi|261377495|ref|ZP_05982068.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
           14685]
 gi|269146228|gb|EEZ72646.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
           14685]
          Length = 473

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 127/347 (36%), Gaps = 45/347 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEGRD------IMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFTRLEVLILDEADRMLDMGFIDDIET-------IVEATPADRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEK 495
           ++  D  + K+  K          +I + R+D+   IE   +   + +    +   I   
Sbjct: 188 SATWDGAVGKLARKLTKDP----EVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRD 243

Query: 496 KESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +        +++ E           +   +HG M    +   +   + G CK+L+AT
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|187934290|ref|YP_001887690.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722443|gb|ACD23664.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
           Eklund 17B]
          Length = 432

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 131/369 (35%), Gaps = 31/369 (8%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +  Q+ L    ++ PT  QE +I  +L           +     G+GKT    I +   +
Sbjct: 10  EPIQRALTEAGYTNPTPIQEQSIPSLLNGKD------FLGCAQTGTGKTAAFAIPVLQNI 63

Query: 319 EAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
               +         A+I+AP   LA Q  E    Y+++T I   +I G + Q  + + L 
Sbjct: 64  AQNQKKSDKPRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTRILG 123

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
                   I+I T     D I    + L  V          R+           ++    
Sbjct: 124 E----GVDILIATPGRLLDLIDQKYIDLSNVKHFV-LDEADRMFDMGMVRDVKKIVAKLP 178

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            + + L+ ++    ++  +      + P+K  + P++   + I +    +++  K   + 
Sbjct: 179 KVRQNLLFSATMPSEVKSLVNS-ILKDPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLV 237

Query: 490 PQIEEK-------KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             ++++                     L +  T S AI HG  S   ++  + +FK G  
Sbjct: 238 HLLKDESIKSLLVFSRTKYGANNIVKDLAKTGTESQAI-HGNKSQNARQLALSNFKEGKI 296

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+AT +   GIDV   S +I  +        +H++ GR GR       I         
Sbjct: 297 RVLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRI-GRTGRAGNSGVAISFCDVDEKS 355

Query: 603 NSYTRLSVL 611
                   +
Sbjct: 356 ALKDIEKTI 364


>gi|111023001|ref|YP_705973.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
 gi|110822531|gb|ABG97815.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
          Length = 586

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 143/386 (37%), Gaps = 35/386 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           ++++ ++ + +      SP+  Q + I  +L      N ++ + Q   G+GKT    + +
Sbjct: 16  LDIDDRVLKALSDVGYESPSPIQAATIPPLLAG----NDVVGLAQ--TGTGKTAAFAVPI 69

Query: 315 AAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALER 370
            + ++      QA+++AP   LA Q  E   KY+ +   + V  I G      +   L R
Sbjct: 70  LSKIDLTQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRR 129

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATA 420
                AH+++GT     D ++   L        +L   DE  + G Q+ +   L      
Sbjct: 130 ----GAHVVVGTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILADTPEY 185

Query: 421 PHVLLMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             V L +AT     R +    + D     +  K +    I    + +    ++    +V+
Sbjct: 186 KQVALFSATMPGAIRKISKQYMHDPVEITMKSKTSTASNISQRYVQVAHQRKLDALTRVL 245

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
             E  +A  I  +         +   E           S + I+G +    +E  +   K
Sbjct: 246 EVEDFEAMIIFVRT--------KQATEDLAEKLRSRGFSASAINGDIVQAQRERTIGQLK 297

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L+AT V   G+DV   S ++  +  H   + +H++ GR GR       +L   P
Sbjct: 298 SGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRI-GRTGRAGRAGEALLFVAP 356

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEED 624
                        +       +   D
Sbjct: 357 RERHLLKAIEKATRQPLAEMQLPSVD 382


>gi|120600329|ref|YP_964903.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146291742|ref|YP_001182166.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120560422|gb|ABM26349.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145563432|gb|ABP74367.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 640

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 93/426 (21%), Positives = 150/426 (35%), Gaps = 56/426 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L  + +  PT  Q ++I  ++           + Q   G+GKT    + +   V  +   
Sbjct: 21  LDELGYEKPTPIQSASIDPLMAGKD------ILGQAQTGTGKTGAFALPLLNKVTSQTTP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E    Y +  +    + I G      +  AL+R       +I+G
Sbjct: 75  QILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKR----GPQVIVG 130

Query: 382 THALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D ++           L+L   DE  + G    ++   +           TP  R
Sbjct: 131 TPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEH----------TPSER 180

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L L S    +  K       R P+   I       E IE+  V +S+  K   +   +E
Sbjct: 181 QLALFSATMPEQIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLE 240

Query: 494 EKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +             S VE    L     +S + +HG M+   +E  +D  K G   +LI
Sbjct: 241 VENTEGVIIFVRTRNSCVELAEKLEARGYAS-SPLHGDMNQQARERAVDQLKRGKLDILI 299

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV     ++  +  +   A +H++ GR GR       IL       +   T
Sbjct: 300 ATDVAARGLDVERIGHVVNYDIPYDAEAYVHRI-GRTGRAGRTGMAILFVTSREMRMLRT 358

Query: 607 RLSVLKNTEDGFLI------AEEDLKQRKEGEILGIKQSGMPKFLIA-------QPELHD 653
                 +      I      AE  L   + GE L    +G   F+         Q E+  
Sbjct: 359 IERSTNSRISPMKIPSPETVAERRLS--RLGEQLAETINGDLDFMKEAVAQLCQQLEVDT 416

Query: 654 SLLEIA 659
            LL  A
Sbjct: 417 DLLAAA 422


>gi|307709536|ref|ZP_07645990.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
 gi|307619667|gb|EFN98789.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
          Length = 523

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 133/363 (36%), Gaps = 34/363 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +   L L  +        DE    G        +++       LL +AT     + + + 
Sbjct: 135 KRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  KI  K    + +    I +   ++     +++  E  +   +  +       
Sbjct: 195 FMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+ 
Sbjct: 249 --KRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    I    P          ++ K    G 
Sbjct: 307 GVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVSPNEMGYLQIIENLTKKRMKGL 365

Query: 619 LIA 621
             A
Sbjct: 366 KPA 368


>gi|258542730|ref|YP_003188163.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633808|dbj|BAH99783.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636867|dbj|BAI02836.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639920|dbj|BAI05882.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642976|dbj|BAI08931.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646031|dbj|BAI11979.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649084|dbj|BAI15025.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652071|dbj|BAI18005.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655128|dbj|BAI21055.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 636

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 125/358 (34%), Gaps = 41/358 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKTLVALIAMAAAVEAG------GQA 324
           PT  QE AI  IL        M R + G    G+GKT    + M   +          ++
Sbjct: 178 PTPIQEQAIPAIL--------MARDVMGVAQTGTGKTASFTLPMLEILSDSRARARMPRS 229

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E    Y +  ++   ++ G    A +++ L R       ++I T  
Sbjct: 230 LILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEVLNR----GVDVLIATPG 285

Query: 385 LFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIP 432
              D  +   L+L       +DE  R      +   +K           LL +AT  P  
Sbjct: 286 RLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNRQTLLFSATMAPTI 345

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R L    L       +  + +    I T I+ ++   +     +++     +   +    
Sbjct: 346 RKLADAFLHSPKEITVARQSSVATTITTGIVVVDEYSKRETLRQLLKDPALQNAIVF--- 402

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N +  V+           S A +HG +    + S ++ FKN   K+L+ + V  
Sbjct: 403 -----CNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVCSDVAA 457

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
            GID+   S +   +        +H++ GR GR         +  P     +     +
Sbjct: 458 RGIDIGGLSHVFNFDLPFHAEDYVHRI-GRTGRAGREGHAYSIATPYDKALAEAIEKL 514


>gi|226365506|ref|YP_002783289.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
 gi|226243996|dbj|BAH54344.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
          Length = 587

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 143/386 (37%), Gaps = 35/386 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           ++++ ++ + +      SP+  Q + I  +L      N ++ + Q   G+GKT    + +
Sbjct: 16  LDIDDRVLKALSDVGYESPSPIQAATIPPLLAG----NDVVGLAQ--TGTGKTAAFAVPI 69

Query: 315 AAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALER 370
            + ++      QA+++AP   LA Q  E   KY+ +   + V  I G      +   L R
Sbjct: 70  LSKIDLTQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRR 129

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATA 420
                AH+++GT     D ++   L        +L   DE  + G Q+ +   L+     
Sbjct: 130 ----GAHVVVGTPGRVIDHLEKGTLDLSKLAYLVLDEADEMLKMGFQEDVERILSDTPEY 185

Query: 421 PHVLLMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             V L +AT     R +    L D     +  K +    I    + +    ++    +V+
Sbjct: 186 KQVALFSATMPGAIRKISKQYLHDPVEITVKSKTSTASNISQRYVQVAHQRKLDALTRVL 245

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
             E   A  I  +         +   E           S A I+G +    +E  +   K
Sbjct: 246 EVEDFGAMIIFVRT--------KQATEDLAERLRSRGFSAAAINGDIVQAQRERTIGQLK 297

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L+AT V   G+DV   S ++  +  H   + +H++ GR GR       +L   P
Sbjct: 298 SGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRI-GRTGRAGRAGEALLFVAP 356

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEED 624
                        +       +   D
Sbjct: 357 RERHLLKAIEKATRQPLAEMQLPSVD 382


>gi|167840691|ref|ZP_02467375.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis MSMB43]
          Length = 458

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/461 (18%), Positives = 169/461 (36%), Gaps = 62/461 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + ++  T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 16  LAQLGYTDMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARRFD 69

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    + V  + G  P   + ++LE      AHII+
Sbjct: 70  VQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIIV 125

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 126 GTPGRIMDHLDRGTLTLGALNTLVLDEADRMLDMGFFDDIAKVARQ------CPPARQTL 179

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   +   
Sbjct: 180 LFSATYPDGIAKLSQQFLRNP--KEVKLDERHDDSKIRQRFYEVTEDERLHAVGLLLNHY 237

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 238 RPVSTIAFCNTKQQCRDLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATD 297

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 298 VAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQDGWALSLASMDEMGRVGGIEQ 356

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILGIKQSGMPKFLIAQP 649
             K   +   +A              E L+           G++LG   +G   F  AQ 
Sbjct: 357 AQKRDVEWHPLAELKADRNEPLLPPMETLQILGGRKDKIRPGDVLGAL-TGDAGFSGAQI 415

Query: 650 -----ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
                    + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 416 GKINVTEFSTYVAVERGIARDALRKL-NAGKIKGKRVKVRL 455


>gi|149907510|ref|ZP_01896257.1| Helicase [Moritella sp. PE36]
 gi|149809180|gb|EDM69109.1| Helicase [Moritella sp. PE36]
          Length = 615

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 141/385 (36%), Gaps = 46/385 (11%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-- 320
           ++L ++ +  PT  Q   I  +      +N    +     G+GKT    + + + ++   
Sbjct: 21  QVLNDLGYEAPTPIQAECIPLL------QNGGDVLGMAQTGTGKTAAFALPLLSNIDTAL 74

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHI 378
              Q +++AP   LA Q  E  + Y+++     V  I G      + KAL+R       +
Sbjct: 75  TKPQILVLAPTRELAIQVAEAFQTYSRHMRGFHVLPIYGGQSYPIQLKALKR----NPQV 130

Query: 379 IIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           I+GT     D I            L+L   DE  R G    ++           +++ TP
Sbjct: 131 IVGTPGRVIDHINRGTLDLSGIKALVLDEADEMLRMGFIDDVE----------SILSKTP 180

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             R + L S    +  +   K     P    I       E IE+  +++   +       
Sbjct: 181 AERQMALFSATMPEEIRRITKRFMTNPTSVKIANKTSTVENIEQKCLIIGGLQAKLDGLT 240

Query: 491 QIEEKKESNFRSVVER-------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +I E ++ +   +  R            E    S A ++G ++   +E  +   K+G   
Sbjct: 241 RILETEDYDGVIIFARTKTMTVELAEKLEARGYSAAALNGDLNQAMRERTVSRLKSGQLD 300

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           ++IAT V   G+DV    ++I  +      + +H++ GR GR     + IL   P   + 
Sbjct: 301 IVIATDVAARGLDVPRIDLVINYDIPTDTESYVHRI-GRTGRAGRKGTAILFAAPRERRL 359

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQR 628
                   +       +   DL  R
Sbjct: 360 LKAIERATRQ-----PLTMMDLPSR 379


>gi|319424978|gb|ADV53052.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 635

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 93/426 (21%), Positives = 150/426 (35%), Gaps = 56/426 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L  + +  PT  Q ++I  ++           + Q   G+GKT    + +   V  +   
Sbjct: 21  LDELGYEKPTPIQSASIDPLMAGKD------ILGQAQTGTGKTGAFALPLLNKVTSQTTP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E    Y +  +    + I G      +  AL+R       +I+G
Sbjct: 75  QILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKR----GPQVIVG 130

Query: 382 THALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D ++           L+L   DE  + G    ++   +           TP  R
Sbjct: 131 TPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEH----------TPSER 180

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L L S    +  K       R P+   I       E IE+  V +S+  K   +   +E
Sbjct: 181 QLALFSATMPEQIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLE 240

Query: 494 EKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +             S VE    L     +S + +HG M+   +E  +D  K G   +LI
Sbjct: 241 VENTEGVIIFVRTRNSCVELAEKLEARGYAS-SPLHGDMNQQARERAVDQLKRGKLDILI 299

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV     ++  +  +   A +H++ GR GR       IL       +   T
Sbjct: 300 ATDVAARGLDVERIGHVVNYDIPYDAEAYVHRI-GRTGRAGRTGMAILFVTSREMRMLRT 358

Query: 607 RLSVLKNTEDGFLI------AEEDLKQRKEGEILGIKQSGMPKFLIA-------QPELHD 653
                 +      I      AE  L   + GE L    +G   F+         Q E+  
Sbjct: 359 IERSTNSRISPMKIPSPETVAERRLS--RLGEQLAETINGDLDFMKEAVAQLCQQLEVDT 416

Query: 654 SLLEIA 659
            LL  A
Sbjct: 417 DLLAAA 422


>gi|281207155|gb|EFA81338.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1157

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 140/387 (36%), Gaps = 42/387 (10%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +   ++L+   +  PT  Q   I  I   MS +N    I     GSGKTL  L+ M   V
Sbjct: 521 EKIHQLLKKNEYEKPTPIQAQTIPAI---MSGRNI---IGIARTGSGKTLAFLLPMFRHV 574

Query: 319 EA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +        G   +IM+P   LA Q Y   KK+++   + V  + G      +   L+R
Sbjct: 575 LSQDRPKQGEGMVGLIMSPTRELALQIYSECKKFSKVLGLRVCCVYGGANIGEQIADLKR 634

Query: 371 IAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRF-----GVQQRLKLTQK 417
                A I++ T     D +           ++  +++DE  R      G Q    +   
Sbjct: 635 ----GADIVVCTPGRMIDILCANNKRITNLRRVSFLVLDEADRMFDLGFGPQIMCIIDNV 690

Query: 418 ATAPHVLLMTAT-PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                 ++ +AT P     V   +    +  I    +        ++ +   +    RL 
Sbjct: 691 RPDRQTVMFSATFPFKVEQVARKILVKPLEIIAGGRSIVCSDVEQVVEVRPSETRYRRLI 750

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
            +L+       I     ++  ++          L          +HG     D++  +  
Sbjct: 751 ELLATWYHKGQILIFTNKQDATDN------LFGLLSRAGYQCLSLHGSKDQTDRDETISD 804

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKN    +LIAT +   G+DV D +++I  +        +H++ GR GR     +     
Sbjct: 805 FKNKIKTILIATPLASRGLDVKDLNLVINYDCPDHLEDYVHRV-GRTGRAGNKGTAYTFV 863

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEE 623
            P   + + + +  L+    G  + EE
Sbjct: 864 LPDEGRFAPSIIKALEQ--SGAKVPEE 888


>gi|282848965|ref|ZP_06258354.1| toxin-antitoxin system toxin component, PIN family [Veillonella
           parvula ATCC 17745]
 gi|282581240|gb|EFB86634.1| toxin-antitoxin system toxin component, PIN family [Veillonella
           parvula ATCC 17745]
          Length = 432

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 130/352 (36%), Gaps = 22/352 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE +I  + +          I +   G+GKTL  L+ +   V       Q +I+A
Sbjct: 24  EPTPIQEQSIPVVFKG------NDVIAKAQTGTGKTLAFLLPILQRVHTDVHQEQVLIIA 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L +Q  +  K+      + +  + G      + + L R    +  +I+GT     D
Sbjct: 78  PTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQLQQLGR----RPQVILGTPGRLLD 133

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +   L L  +         Q L +       +  L++ T   R L+L S    D  + 
Sbjct: 134 HAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIEN--LISQTDANRQLLLFSATIPDKIRN 191

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVE 505
             K    KPI       +   E I++   +++  +K   +   IE+        F +  E
Sbjct: 192 LAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEKTQRLIKMIEDDNPFLAIVFCNKRE 251

Query: 506 RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
               L    T+   +IA +HG ++   +  ++  F     ++L+AT +   GID+   + 
Sbjct: 252 GAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITH 311

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +   +  H     +H++ GR GR       +    P            ++ T
Sbjct: 312 VYNYDVPHDVDYYIHRI-GRTGRAGNSGIAVTFATPQDEAWLRRIERAIQAT 362


>gi|254462976|ref|ZP_05076392.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2083]
 gi|206679565|gb|EDZ44052.1| ATP-dependent RNA helicase RhlE [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 495

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 142/388 (36%), Gaps = 49/388 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N++ K+ + I      SPT  QE AI   L+          +     G+GKT    + M
Sbjct: 7   LNLDPKVLKAIDDAGYESPTPIQEGAIPPALEGRDV------LGIAQTGTGKTASFTLPM 60

Query: 315 AAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIV-EIITGNMPQAHRRKA 367
              +  G       +++++ P   LA Q  E    YT+  + +   ++ G +    + + 
Sbjct: 61  ITMLGKGRARARMPRSLVLCPTRELAAQVAENFDTYTKYHKKLSKALLIGGVSFKEQDRL 120

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQK----- 417
           +++       ++I T     D ++  KL+L     ++VDE  R      +   ++     
Sbjct: 121 IDK----GVDVLIATPGRLLDHVERGKLLLTGVQVMVVDEADRMLDMGFIPDIERIFGLT 176

Query: 418 ATAPHVLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPI---------- 465
                 L  +AT  P    +  T L +    ++  +    + I+ V++            
Sbjct: 177 PFTRQTLFFSATMAPEIERITNTFLSNPARVEVARQATASENIEQVVMMFKGSRKDREGT 236

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
            +   + + +         A   C +         +  V+      + +    A IHG +
Sbjct: 237 EKRKALRKLIDAEGDACTNAIIFCNR---------KMDVDVVAKSLKKYGYDAAPIHGDL 287

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
               +   +D F+ G  + L+A+ V   G+DV   S +   +        +H++ GR GR
Sbjct: 288 DQSQRTKTLDGFREGGLRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRI-GRTGR 346

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKN 613
                  +++  P   KN      +++ 
Sbjct: 347 AGRDGKAVMICVPRDEKNFDAIEKLIQK 374


>gi|254251488|ref|ZP_04944806.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
 gi|124894097|gb|EAY67977.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
          Length = 480

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 126/363 (34%), Gaps = 30/363 (8%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------- 318
             + ++ PT  Q+ AI  +L           +     G+GKT    + +   +       
Sbjct: 20  NELGYTSPTPIQQQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHTFYAEH 73

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
              +   +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 74  RNAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKR----G 129

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             I++ T     D +Q   + L  +D         R+           +L    P  + L
Sbjct: 130 VDIVVATPGRLLDHMQQKTIDLSSLD-ILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNL 188

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I  + +      P    +   N   E + +    +   +K   +   I E 
Sbjct: 189 LFSATFSDEIKALADSLLD-SPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREH 247

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +    R          S   IHG  S   +   +  FKN T ++L+AT 
Sbjct: 248 NWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALTEFKNSTLQVLVATD 307

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   GID+     ++  +  +     +H++ GR GR       + L      +       
Sbjct: 308 IAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLVCVDEKQLLRDIER 366

Query: 610 VLK 612
           ++K
Sbjct: 367 LIK 369


>gi|121593545|ref|YP_985441.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120605625|gb|ABM41365.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
          Length = 484

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 70/390 (17%), Positives = 135/390 (34%), Gaps = 43/390 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-----------G 322
           T  Q  AI  +L           +     G+GKT    + +   +               
Sbjct: 27  TPIQAQAIPVVLTGKDV------MGAAQTGTGKTAAFSLPLLQRLLKHENSSASPARHPV 80

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LA Q  + I  Y + T++   ++ G M    +   L++       +++ T
Sbjct: 81  RALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTIELKK----GVEVLVAT 136

Query: 383 HALFQDSIQYYKLILVIV-----DEQHRFG-----VQQRLKLTQKATAPHVLLMTAT--P 430
                D I+    +L  V     DE  R          +  L+        LL +AT  P
Sbjct: 137 PGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSATFSP 196

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + L  + L D    ++         ++     ++  D+      V+   G K  +I  
Sbjct: 197 EIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDGDDKRRAIRHVLNERGLKQAFIFV 256

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   N +    R     E      A +HG  S  ++   +++FK+G   LL+ T V
Sbjct: 257 --------NSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAFKSGEVDLLVCTDV 308

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D   +   +        +H++ GR GR       + L     ++       +
Sbjct: 309 AARGLDIKDVPAVFNYDVPFNAEDYVHRI-GRTGRAGASGLAVTLAASSDTRLVADIEKL 367

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
           +K   +   +  ++ + R      G + SG
Sbjct: 368 IKKKIELEPLELQEDRPRGRYN-DGRRASG 396


>gi|66825831|ref|XP_646270.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|74897412|sp|Q55D61|IF4A_DICDI RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=ATP-dependent RNA helicase tifA
 gi|60474009|gb|EAL71946.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 405

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/343 (22%), Positives = 125/343 (36%), Gaps = 37/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AI  I++          I Q   G+GKT    I     VE      Q +I++
Sbjct: 54  KPSAIQQRAILPIIKGRDT------IAQAQSGTGKTATFSIGALQCVEVNVRSPQVLILS 107

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  +     ++   I V    G    +   K LE       HI+ GT     D
Sbjct: 108 PTRELAQQIQKVALALSEFMNIQVHACVGGKNLSDDVKKLET----GVHIVSGTPGRVLD 163

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I    L        IL   DE    G QQ++            ++L++AT     + +T
Sbjct: 164 MITRKSLPTRHIKMMILDEADEMLSLGFQQQINDVYRYLPNGTQIVLVSATLTQDVVSMT 223

Query: 439 SLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
                   +I           IK   + + + D     L  +       +A   C     
Sbjct: 224 EKFMTKPVRILLKRDELTLDGIKQFFVSVEKEDWKFGTLCDIYDSLTITQAVIFCNT--- 280

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V++          ++A +HG M   ++E ++ SF++G  ++LI T ++  G
Sbjct: 281 ------KKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARG 334

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           IDV   S++I  +        +H++ GR GR       I    
Sbjct: 335 IDVQQVSLVINYDLPIDRENYIHRI-GRSGRFGRKGVAINFVK 376


>gi|295704908|ref|YP_003597983.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294802567|gb|ADF39633.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 466

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 132/350 (37%), Gaps = 23/350 (6%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  +K + N+ F   T  Q  AI   +           I Q   G+GKT    I +   
Sbjct: 10  SKDIEKAIHNLGFEEATPIQAEAIPIAMTGKD------LIGQAQTGTGKTTAFGIPLIER 63

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      Q +++AP   LA Q  E + +  Q   +    I G      + KAL++    
Sbjct: 64  VELSEEAIQGIVLAPTRELAIQVAEELNRIGQVKGVKTLPIYGGQDINRQIKALKK---- 119

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + HII  T     D ++   + L  +         + L +        +L   ++P  +T
Sbjct: 120 RPHIISATPGRLMDHMKRRTIRLNHIRTAVLDEADEMLNMGFIEDIQTILGGISSP-HQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     +  + +K     P    +       + IE+  V + E +K   +C  ++ 
Sbjct: 179 LLFSATMSKQVQSLAQKFMN-TPELVQVKAKQLTVKNIEQQYVEIPENRKFDVLCNLVDL 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +       F    +R + L E           IHG ++   +  V+  FK  T ++++AT
Sbjct: 238 QSPDLAIVFGRTKKRVDELAEGLKKRGYAAEGIHGDLTQSKRADVIRQFKEHTIEIMVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   S +   +      + +H++ GR GR       +    P
Sbjct: 298 DVAARGLDITGVSHVYNFDIPQDPESYVHRI-GRTGRAGTKGLAVTFIIP 346


>gi|149178000|ref|ZP_01856597.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
 gi|148843193|gb|EDL57559.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
          Length = 418

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 141/368 (38%), Gaps = 36/368 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q   I   +           I Q   G+GKT    + +   ++    G QA+I+A
Sbjct: 37  TPSPIQSELIPIAVTGQD------CIGQARTGTGKTAAFSLPVLQQLDLRRPGMQALILA 90

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L++Q    I+K   +  + + ++ G  P   +   L++     A I +GT     D
Sbjct: 91  PTRELSEQVAAEIRKLCTSKSLSIAVLVGGKPVRPQENQLKK----GAQIAVGTPGRVID 146

Query: 389 SIQYYKL-----ILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTAT--PIPRTLV 436
            I    L       V++DE  R             L +       LL++AT  P    L 
Sbjct: 147 HINRGNLQLGTLGFVVLDEADRMLDIGFRPDIEKILRKCPEKRQTLLLSATLPPPVERLA 206

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              + +  +  ++E       I    I ++   ++    +++  E  K   +  +     
Sbjct: 207 NRYMQNPVMIDLSEDKVSVDAIDQYYITVDPDRKIKLLSRLLFQERPKQTIVFTRT---- 262

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   ++ + +       +A IHG +    ++ V+  F+ G  +LLIAT V+  GID
Sbjct: 263 ----KRGADKLDRIFSKKLKEVAAIHGDLPQPKRDRVLKKFREGKIRLLIATDVMGRGID 318

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGR--GEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           V   S II  +   F    +H++ GRVGR   ++  +      P   +      + + + 
Sbjct: 319 VSGISHIINFDIPEFSDDYVHRI-GRVGRLSSDQKGAAFTFVAPDEGEQLTNIENRINHM 377

Query: 615 EDGFLIAE 622
              F + E
Sbjct: 378 VKEFRVDE 385


>gi|147918815|ref|YP_687459.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
 gi|110622855|emb|CAJ38133.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
          Length = 451

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 80/357 (22%), Positives = 128/357 (35%), Gaps = 39/357 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   K L ++ F   T  Q+S I   L+          I Q   G+GKT    I M   
Sbjct: 10  SEPVMKALASMGFEESTHIQDSTIPLALKGKDV------IGQAPTGTGKTAAFGIPMIEI 63

Query: 318 VEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
            +     QA+++ P   LA Q  E + K  Q   I    I G      + K L+     +
Sbjct: 64  CDNSPSIQAIVITPTRELAIQVSEELNKIGQFKGIRALPIYGGQEYKWQMKGLKE----K 119

Query: 376 AHIIIGTHALFQDSIQYYK---------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
             II+ T     D +   K         L+L   DE    G    +           ++ 
Sbjct: 120 PQIIVATPGRLMDHLTKQKSIKGNDVKMLVLDEADEMLDMGFIDDIY---------AVME 170

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +TL+ ++    +I KI      +KP              I +  V + E  K  
Sbjct: 171 KLPAERQTLLFSATMSPEIKKIA-VELMKKPHIVGQESKKVKSPAISQHYVEVHESGKFE 229

Query: 487 WICPQIEEKK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
            +C  ++ +       F     R + L E  T        +HG M    + S+M  FKNG
Sbjct: 230 ALCRILDTQCPDLAIVFVRTKVRVDELQEGLTRRGYAAVGLHGDMDQQRRNSIMKQFKNG 289

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             ++L+AT V   G+D+ D S +   +      + +H++ GR GR  +    I    
Sbjct: 290 KTQVLVATDVAARGLDISDVSHVFNFDIPRDPESYVHRI-GRTGRAGKSGISITFVT 345


>gi|146302300|ref|YP_001196891.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146156718|gb|ABQ07572.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 415

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 70/356 (19%), Positives = 129/356 (36%), Gaps = 30/356 (8%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---------EAGGQ 323
           PT  QE +I  +L           I     G+GKT    I +   +             +
Sbjct: 24  PTPIQEKSIPIVLAGRD------LIGCAQTGTGKTAAFAIPIIHQLHRIVGSSKKAKQIR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  +    Y++ T +    I G + Q  +  AL         +++ T 
Sbjct: 78  ALIVTPTRELAVQIGQSFDTYSKYTNLTQLTIFGGVSQNPQVDAL----KNGVDVLVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTSLGD 442
               D  +   L L  +         Q L +        ++    TP   +TL+ ++   
Sbjct: 134 GRLLDLHKQGFLDLNHLHTLVLDEADQMLDMGFINDVKKIV--KLTPKNRQTLLFSATMP 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
           + I ++ E    + P K  + P++   E +E+    + + +K   +   I+E+  SN   
Sbjct: 192 LAIRELAEMFL-QDPEKVEVSPVSSTAENVEQRVYFVDKTEKRNLLYRLIKEENLSNVLV 250

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   +               IHG  S   ++ V+D+FKN    +L+AT +   GID
Sbjct: 251 FSRTKHGADNVVKALRKKNIPAEAIHGDKSQNARQRVLDAFKNKEVGVLVATDIAARGID 310

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     +I  +  +     +H++ GR GR       I                ++K
Sbjct: 311 IEQLPYVINFDLPNIPETYVHRI-GRTGRAGNGGIAISFCGKDEEPYWKDIKKLIK 365


>gi|329905038|ref|ZP_08273973.1| ATP-dependent RNA helicase DbpA [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547774|gb|EGF32547.1| ATP-dependent RNA helicase DbpA [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 461

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 86/463 (18%), Positives = 168/463 (36%), Gaps = 70/463 (15%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ +   T  Q  ++  IL      +R   I Q   GSGKT    I +   +      
Sbjct: 21  LDSLGYHEMTPIQAKSLPVIL------DRRDLIAQAKTGSGKTAAFGIGILQRLNPTWFA 74

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +  +LE      AHII+
Sbjct: 75  IQALVICPTRELADQVSNELRRLARFADNTKILTLCGGAPMRPQIASLEH----GAHIIV 130

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    +D I            L+L   D     G  + +            +++A P  
Sbjct: 131 GTPGRLRDHIGRGSIDLSTVQTLVLDEADRMVDMGFYEEIS----------GIVSACPTR 180

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R  +L S    D  + +  P  R P +  +      D  IE+    +    +   +   +
Sbjct: 181 RQTLLFSATYPDDIRKSSAPFLRDPTEITV-EAQHDDNRIEQRFYEVGYDDRNDAVGRLL 239

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              K        N +               S   ++G +   +++ ++  F NG+C +L+
Sbjct: 240 NNYKPASALAFCNTKIHCRELADELRAQGFSAMALYGELEQRERDEILVLFANGSCSVLV 299

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+    ++I  +        +H++ GR GRG      + L  P   K    
Sbjct: 300 ATDVAARGLDIQSLEMVINVDVSKDTEVHIHRV-GRTGRGAARGLALSLCAPNEKKWVKL 358

Query: 607 RLSVLKNTEDGFLIAEEDLK----------------------QRKEGEILG--IKQSGMP 642
                      F +A  DL+                      + + G++LG     +G+ 
Sbjct: 359 IEDYQHGPVSWFDLA--DLEVAPGPALEAPMVTLLIMGGKKDKLRPGDLLGALTGDAGLT 416

Query: 643 KFLIAQPELHDSLLEIA--RKDAKHILTQDPDLTSVRGQSIRI 683
           K  + +  + + +  +A  R+ AK    +  +  +++G++ ++
Sbjct: 417 KEQVGKINVFEFMTYVALDRRIAKKAFAKL-EGGNIKGRNFKM 458


>gi|311071129|ref|YP_003976052.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
 gi|310871646|gb|ADP35121.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
          Length = 497

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 131/375 (34%), Gaps = 25/375 (6%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           +  + F   T  Q   I   LQ          I Q   G+GKT    I +   +      
Sbjct: 18  INRLGFEEATPIQAETIPLGLQHKDV------IGQAQTGTGKTAAFGIPLVEKINPESPN 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++AP   LA Q  E + K  Q+ +  V  I G      + +AL++      HII+G
Sbjct: 72  IQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKK----NPHIIVG 127

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLTSL 440
           T     D I    L L  V+        + L +        +L  +  P   +TL+ ++ 
Sbjct: 128 TPGRLLDHINRRTLRLNNVNTVVMDEADEMLNMGFIEDIESIL--SNVPSEHQTLLFSAT 185

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---E 497
               I +I E+     P    +         I++  + + E KK   +   ++ +     
Sbjct: 186 MPAPIKRIAERFMT-NPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQSPELA 244

Query: 498 SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F     R + L E           IHG ++   +   +  FK G  ++L+AT V   G
Sbjct: 245 IVFGRTKRRVDELSEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+   + +   +      + +H++ GR GR  +    +    P             K  
Sbjct: 305 LDISGVTHVYNFDVPQDPESYVHRI-GRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRK 363

Query: 615 EDGFLIAEEDLKQRK 629
            D       D     
Sbjct: 364 MDRMKEPTLDEAIEG 378


>gi|295702900|ref|YP_003595975.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294800559|gb|ADF37625.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 481

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/363 (20%), Positives = 130/363 (35%), Gaps = 39/363 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           PT+ Q   +   L+          +++   GSGKT    I +   V   E   QA+++ P
Sbjct: 27  PTEVQSKVLPIALE------ERDVVVKSQTGSGKTASFGIPLCELVNWEENKPQALVLTP 80

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I    +  +I    + G  P A ++  L++    + HI++GT     D 
Sbjct: 81  TRELAAQVKEDITNIGRFKRIKAAAVYGKSPFAKQKVELKQ----KTHIVVGTPGRVLDH 136

Query: 390 IQYYKLILVIV--------DEQHRFGV-QQRLKLTQKATAPHVLLMTATPIPRT---LVL 437
           I+   L L  +        DE    G   Q   + Q   +  V ++ +  +P     L  
Sbjct: 137 IEKETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQHLPSERVTMLFSATLPEDIEELSR 196

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
             +      +I         I   +I +    +      V   E   +  I  + +E+  
Sbjct: 197 KYMKKPVDVEIKANGLTTSTIDHSVISVGNERKFELLKDVTTVENPDSCIIFCRTQEQVN 256

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +             +        IHG M   D+  VM+ FK G  + L+AT V   GID+
Sbjct: 257 TLLDD--------LDDLGYPCDKIHGAMVQEDRFEVMNDFKKGKFRYLVATDVAARGIDI 308

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            + + +I  +      + +H+  GR GR  +    I    P   +        +     G
Sbjct: 309 DNITHVINYDLPLEKESYVHR-TGRTGRAGKKGKAITFVTPYEERMLSEIEEYI-----G 362

Query: 618 FLI 620
           F I
Sbjct: 363 FSI 365


>gi|308081024|ref|NP_001183303.1| hypothetical protein LOC100501699 [Zea mays]
 gi|238010618|gb|ACR36344.1| unknown [Zea mays]
          Length = 643

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 136/376 (36%), Gaps = 46/376 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  AI   +           +     GSGKT      + + +    +        
Sbjct: 197 KPTPLQRYAIPISIAGRD------LMACAQTGSGKTAAFCFPIISGILKSPKPHQRSRST 250

Query: 324 ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                 A+I++P   L+ Q +E  +K+   T + V +  G  P  ++ + LER       
Sbjct: 251 RTACPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPITNQLRELER----GVE 306

Query: 378 IIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I++ T     D ++  ++ L ++     DE  R          Q       + M      
Sbjct: 307 ILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEP--QIRKIVEGMDMPQRGER 364

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +T++ ++    +I ++            V    +  D +++R++ VL   K++Y +   I
Sbjct: 365 QTMLFSATFPKEIQRMAADFLADYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSY-LMDLI 423

Query: 493 EEKKES-------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +K +               +   +               IHG  +  ++E  + SFK+
Sbjct: 424 HAQKANGTHGKHALTLVFVETKRGADALEDWLFRNGFPATSIHGDRTQQEREHALRSFKS 483

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+   + +I  +  +     +H++ GR GR  +       ++  
Sbjct: 484 GATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRI-GRTGRAGKSGLATAFFNES 542

Query: 600 LSKNSYTRLSVLKNTE 615
            +  +     ++K   
Sbjct: 543 NTTLARPLSDLMKEAN 558


>gi|171778647|ref|ZP_02919743.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282604|gb|EDT48028.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 533

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 127/344 (36%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     ++      QA+++A
Sbjct: 23  EPSPIQELTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLDKIDTSRNLVQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ +   + V  + G      + KAL       AHI++GT     D
Sbjct: 77  PTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT---PIPRTL 435
            I+   L L  V        DE    G        +++   +   LL +AT   PI R  
Sbjct: 133 LIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPESRQTLLFSATMPEPIKRIG 192

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           V   + + +  KI  K    + I    + +   ++     +++  +  +   +  +    
Sbjct: 193 VN-FMKNPEHVKIAAKELTTELIDQYYLRVKENEKFDTMTRLMDVDQPELSIVFGRT--- 248

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+
Sbjct: 249 -----KRRVDELTRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGL 303

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           D+   + +   +      + +H++ GR GR  +    I    P 
Sbjct: 304 DISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVSPN 346


>gi|21228658|ref|NP_634580.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
 gi|20907159|gb|AAM32252.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
          Length = 429

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/358 (19%), Positives = 134/358 (37%), Gaps = 37/358 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
           SPT  QE +I  IL           I     GSGKTL     +    E G   QA+I+ P
Sbjct: 51  SPTAIQEKSIPLILAGEDV------IGGAATGSGKTLSFASGILQNSEKGKGIQALILTP 104

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q    ++K+++   + +  I G +    + K L+      A +++GT     D 
Sbjct: 105 TRELAEQVANSLRKFSKYDPLNIASIYGGVGINTQIKELK-----NAEVVVGTPGRLLDH 159

Query: 390 IQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLTS 439
           I            L+L   D     G +  +   + +       LL +AT     + L+ 
Sbjct: 160 ISRNTIKLNNVKTLVLDEADHMFDMGFKVDVEKIIKECPQNRQTLLFSATITKDIVRLSR 219

Query: 440 LGDIDISKI-TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               +  ++ TE     + +  V+  +    ++   + ++ +E      +          
Sbjct: 220 KYMENPVRVSTESYIDPQKLNQVVYKVQDDMKLSLLVYLLQNEKSNLGMVF--------C 271

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           N +   ++        + +   IHG ++  ++  +++ F +G   +L+ T V   G+D+ 
Sbjct: 272 NTKRNTDKVAKNLRKSSINAVAIHGGLTQNERTRILEKFHSGNIGVLVCTDVAGRGLDIQ 331

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
             S +   +        +H++ GR  R       I +    LSKN +     +    D
Sbjct: 332 GVSHVYNYDIPRESKQYIHRI-GRTARAGTEGKAINI----LSKNDHANFMSVLKDND 384


>gi|241747700|ref|XP_002414349.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215508203|gb|EEC17657.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 519

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 147/384 (38%), Gaps = 44/384 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N      +         P+  Q  A   +L        ++ I Q   GSGKTL  ++  
Sbjct: 99  CNFPEPCRELFRSKNFTEPSPIQAQAWPVVL----GGRDLVGIAQ--TGSGKTLAYVLPA 152

Query: 315 AAAV--------EAGGQAVIMAPIGILAQQHYEFI-KKYTQNTQIIVEIITGNMPQAHRR 365
           A  +        + G   V++AP   L QQ  +   +      ++    + G + +  + 
Sbjct: 153 AIHMSDQPQPERDEGPIGVVLAPTRELVQQISQVAYEWCGGAFRLKGAPVYGGVSKGPQI 212

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT-- 415
             L+    G AHI I T     D ++           L+L   D     G + +++    
Sbjct: 213 ARLQ----GGAHICIATPGRLLDILETGAINLLRCSYLVLDEADRMLDMGFEPQIRKIVD 268

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE------KPAGRKPIKTVIIPINRID 469
           Q       ++ +AT       L      D  +IT            + +  V     + +
Sbjct: 269 QTRPDRQTVMWSATWPSEVRDLAEEFLTDHVQITVGSEDLCANHNIRQVVHVCQGFEKEE 328

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           +++E L+ + +EG +   I         +    VV    +L+++   ++A  HG +S   
Sbjct: 329 KLLETLREINAEGDQRTLIFV-------ATKARVVTIVQNLYKNGFRAVAT-HGDLSQNK 380

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           ++  +D F++G   +L+AT V   G+DV D   +I  +      + +H++ GR GR    
Sbjct: 381 RDIALDRFRSGKTPILVATDVAARGLDVSDIKYVINYDYPDTSESYVHRI-GRTGRSNRS 439

Query: 590 SSCILLYHPPLSKNSYTRLSVLKN 613
            + I L+ P  +  +   +SVL+ 
Sbjct: 440 GTAITLFTPDNAGQAKQLVSVLQE 463


>gi|254437196|ref|ZP_05050690.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
 gi|198252642|gb|EDY76956.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
          Length = 435

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 131/364 (35%), Gaps = 43/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG------Q 323
            PT  Q  AI   +           +     GSGKT    + M   +  E G       +
Sbjct: 23  DPTPIQAQAIPHAMNGRDV------MGLAKTGSGKTAAFGLPMIDMLLKEQGKPEGKTAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA+Q  E +  YTQ T +   ++ G      + + LER       +++ T 
Sbjct: 77  ALILAPTRELAKQIQENLAAYTQGTHLKTMLVVGGAGITGQIRKLER----GVDLLVATP 132

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D ++           L+L   D+    G    L+                P  +T+
Sbjct: 133 GRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAP---------LLAPERQTM 183

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     ++++      + P++  +    +  E IE+    +++  K   +   I++ 
Sbjct: 184 LFSATMPKLMAELAGAFL-KNPMRVQVDAPGKPVERIEQSVHFVAKAAKTDLLLELIDKH 242

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           ++         +   E+ + L        A IHG  S   ++  +  FK G  K+L+AT 
Sbjct: 243 RDERAIVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVKILVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +   I   +  +     +H++ GR  R       I    P           
Sbjct: 303 VAARGLDIPEVKHIYNYDLPNVAENYVHRI-GRTARAGADGMAIAFCAPDEMGELRDIQK 361

Query: 610 VLKN 613
            +K 
Sbjct: 362 AMKA 365


>gi|153839129|ref|ZP_01991796.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260902834|ref|ZP_05911229.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|149747384|gb|EDM58352.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308107831|gb|EFO45371.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
          Length = 430

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 67/377 (17%), Positives = 142/377 (37%), Gaps = 39/377 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
             T  Q+ AI      M++K   +       G+GKT    + M   +   G+        
Sbjct: 23  KLTPIQQKAIP-----MARKGHDIF-ATAQTGTGKTAAFSLPMIQQLLDSGRTASRKTAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA+Q  + IK YT+ T + V  + G    + +  ALE        I++ T 
Sbjct: 77  ALILAPTRELAEQIADNIKAYTKYTDLSVVAVFGGRKMSSQISALEN----GVDILVATP 132

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPR 433
              ++ I+           L+    D     G     R  +    T P +++ +AT   +
Sbjct: 133 GRLEEHIEQGNVSVANLEFLVFDEADRILDMGFIHAVRKIMLDVDTDPQIMMFSATTSSQ 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
             +L         +I  + A      +  V+ P+++  +     +++  +  +   +   
Sbjct: 193 LNLLAKDILRKPKRIEVERANTTAHTVAHVLYPVDQERKTELLSELIGRKNWQQVLVFVN 252

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +E       +  +    L      ++ + HG  +   +   ++ FK G  ++++AT V 
Sbjct: 253 YKE-------TANDVVKELKLDGIKAV-VCHGDRAQSARRRALEEFKTGKVRVMVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D   ++  +        +H++ GR GR  +    +   +           +++
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRI-GRTGRAGKQGHAVSFVNRDEELTVVQVENLI 363

Query: 612 KNTEDGFLIAEEDLKQR 628
           +       +A  + KQR
Sbjct: 364 QQRIRRIELAGYEPKQR 380


>gi|229542534|ref|ZP_04431594.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
 gi|229326954|gb|EEN92629.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
          Length = 475

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 130/344 (37%), Gaps = 27/344 (7%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
           + + F   +  Q + I   +Q          I Q   G+GKT    I +   ++      
Sbjct: 18  KRMGFEEASPIQAATIPLTMQGKD------IIGQAQTGTGKTAAFGIPLIEKIDHRSRNI 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +I+AP   LA Q  E + +  Q++++ V  + G    + + +AL         II+GT
Sbjct: 72  QGIIIAPTRELAIQVSEELYRIGQDSRVHVLAVYGGQDISRQIRAL----KNHPQIIVGT 127

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT--PIPRTLVLTSL 440
                D I    L L   D  H   + +  ++        +  + +T     +T++ ++ 
Sbjct: 128 PGRILDHIHRGTLKL---DHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQTMLFSAT 184

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---E 497
               I KI E+     P    +         IE+  V + E +K   +   ++ +     
Sbjct: 185 MPDPIRKIAERFMN-NPELVRVKAKEMTVPSIEQYYVKVQEREKFDVLSRLLDVQSPDLA 243

Query: 498 SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F     R + L             IHG +S   + SV+  FK+G   +L+AT V   G
Sbjct: 244 IVFGRTKRRVDELANALNLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLVATDVAARG 303

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +D+   + +   +      + +H++ GR GR       +    P
Sbjct: 304 LDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGREGMAMTFVTP 346


>gi|169773397|ref|XP_001821167.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Aspergillus
           oryzae RIB40]
 gi|91207407|sp|Q2UH00|PRP28_ASPOR RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|83769028|dbj|BAE59165.1| unnamed protein product [Aspergillus oryzae]
          Length = 803

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 138/388 (35%), Gaps = 55/388 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q +AI   +Q          I     GSGKT   L+ +   +             
Sbjct: 389 EPTPIQRAAIPIAMQSRD------LIGVAVTGSGKTASFLLPLLVYIAELPRIDEFEWRK 442

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G  A+++AP   LAQQ     KK+T+     V  I G      +  +L       A I
Sbjct: 443 NDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRN----GAEI 498

Query: 379 IIGTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLT--------------- 415
           II T     D I+   L+L           D     G ++ +                  
Sbjct: 499 IIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSEE 558

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            + + A    + T     +T++ T+     + +I  K   R  I T+      +D V +R
Sbjct: 559 AENSMAMSQHIGTKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQR 618

Query: 475 LKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           ++ +  E K+   +   +   +         N +   +      + +  S   +HG  + 
Sbjct: 619 VEFIAGEDKRKKRLGDILSSGEFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQ 678

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +E+ + S +NG   +L+AT +   GIDV D S++I  N      +  H++ GR GR  
Sbjct: 679 EQREAALASVRNGQTDVLVATDLAGRGIDVPDVSLVINFNMATTIESYTHRI-GRTGRAG 737

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +    I       +   Y    ++  + 
Sbjct: 738 KSGVAITFLGNEDTDVMYDLKQMIMKSS 765


>gi|294901515|ref|XP_002777392.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885023|gb|EER09208.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 531

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 138/365 (37%), Gaps = 38/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            P+  Q       +        M+ I   + GSGKTL  L+     + A        G  
Sbjct: 139 KPSPIQVQGWPVAM----SGRDMVGI--AETGSGKTLAFLLPAIVHINAQPYLQRGDGPI 192

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  E   ++ ++++I    + G  P+  + +AL         I I T 
Sbjct: 193 VLVLAPTRELAVQTQEECNRFGRSSRIRNTCVYGGTPRGPQARALAN----GVEICIATP 248

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       ++  +++DE  R          +K T+         P  +TL+ +
Sbjct: 249 GRLIDFLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKITSQVR------PDRQTLLWS 302

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +    +I  +       +P+   +  ++ R    + +   ++ + +K   +   +E   +
Sbjct: 303 ATWPKEIQGLARDLCREEPVHINVGSMSLRASHNVTQYVDIVQDYEKKDKLKQLLERIMD 362

Query: 498 -------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  ++ +   +    +          IHG     +++ V+  FK+G   ++IAT V
Sbjct: 363 GSKIVIFTDTKRAADDLTRMLRMDGWPALSIHGDKKQEERDWVLQEFKSGKSPIMIATDV 422

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D   +I  +        +H++ GR GR     S    + P   K +   + V
Sbjct: 423 ASRGLDVKDLRHVINYDFPGQIEDYVHRI-GRTGRAGAKGSAYSFFTPDKYKLAKDLIGV 481

Query: 611 LKNTE 615
           L+  E
Sbjct: 482 LREAE 486


>gi|154418331|ref|XP_001582184.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121916417|gb|EAY21198.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 640

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 83/419 (19%), Positives = 151/419 (36%), Gaps = 56/419 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
            PT  Q  AI  IL           I     GSGKTL  +I     V A          A
Sbjct: 123 QPTSIQCQAIPCILSGRD------IIGCAVTGSGKTLAFIIPCLLHVLAQPPTGQYEAAA 176

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI++P   LA Q +   +K           + G     ++ +A++  ++    +II T  
Sbjct: 177 VILSPTRELAYQTHIECQKIFSLMDKKSACLVGGNDIENQLRAIKNGSN----VIIATPG 232

Query: 385 LFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            F D +        +   L++   D     G + ++    +               +TL+
Sbjct: 233 RFIDLLSSSAFNIKKVSYLVIDEADRMFDLGFEPQVIRIAERMRKD---------RQTLM 283

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK- 495
            ++     + +I  K   +  I+ V+   N +   I +  +V +E  K   +   + +  
Sbjct: 284 FSATFPHTVERIARK-LLQNSIEIVVGLRNVVTPNINQSILVTNEDNKFNSLLKILGDYT 342

Query: 496 ---KESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
              +   F +  +R   L         S+ ++HG M   D+ S++  F+ G   +L+ T+
Sbjct: 343 TQGQALVFTNTQDRAEDLFGKLNKSGYSVGLLHGSMDSPDRNSILHDFREGRFSVLVLTS 402

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+     +I  +A       +H++ GR GR  +               +    +
Sbjct: 403 VGARGIDIASIICVINYDAPDHEADYVHRV-GRTGRAGKKGYAFTFVTDKDKTAAAGIKN 461

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
            +K +        EDL Q       G+K  G+  F        D      +++AK +L 
Sbjct: 462 AMKKSGCEIPKDLEDLCQ-------GVKAPGLNGFWRGSGFKFD------KEEAKSLLA 507


>gi|67624743|ref|XP_668654.1| DEAD box polypeptide, Y chromosome-related [Cryptosporidium hominis
           TU502]
 gi|54659828|gb|EAL38390.1| DEAD box polypeptide, Y chromosome-related [Cryptosporidium
           hominis]
          Length = 702

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 130/377 (34%), Gaps = 54/377 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM-AAAVEAGGQ-------- 323
           PT  Q+ +I  +L           +     GSGKT   L  +    +  G          
Sbjct: 224 PTPVQKFSIPTVLNGRD------LMACAQTGSGKTAAFLFPIVMKMLNDGPPPTPQQSSL 277

Query: 324 ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                    A++++P   LA Q YE  +K+   T I   ++ G      +   L+R    
Sbjct: 278 RIKRMAYPVALVLSPTRELAIQTYEESRKFCFGTGIRTNVLYGGSEVRSQIMDLDR---- 333

Query: 375 QAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAPHVL- 424
            + II+ T    +D I   K        LIL   D     G   Q  ++ + +  PH L 
Sbjct: 334 GSDIIVATPGRLRDLIDRGKVNLKLIKFLILDEADRMLDMGFAPQIREIVEDSEMPHSLD 393

Query: 425 -----LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                + +AT     + L    L +     +    A    I   ++      +    +K+
Sbjct: 394 GRQTVMFSATFPREIQQLAKDFLHNYIFLTVGRVGATSGSIVQRVVYAEEDHKPRLLVKL 453

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           +L +G+    +            +   ++              IHG  S  ++E  +  F
Sbjct: 454 LLEQGEGLTVVFV--------EMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALRLF 505

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G   +L+AT V   G+D+ + + +I  +        +H++ GR GR           +
Sbjct: 506 RSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRI-GRTGRAGNTGLATSFVN 564

Query: 598 PPLSKNSYTRLSVLKNT 614
                     L+ L+ +
Sbjct: 565 ESNKPILRDLLAALEES 581


>gi|66357412|ref|XP_625884.1| Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc)
           [Cryptosporidium parvum Iowa II]
 gi|46226846|gb|EAK87812.1| Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc)
           [Cryptosporidium parvum Iowa II]
 gi|323510023|dbj|BAJ77905.1| cgd4_3000 [Cryptosporidium parvum]
          Length = 702

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 130/377 (34%), Gaps = 54/377 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM-AAAVEAGGQ-------- 323
           PT  Q+ +I  +L           +     GSGKT   L  +    +  G          
Sbjct: 224 PTPVQKFSIPTVLNGRD------LMACAQTGSGKTAAFLFPIVMKMLNDGPPPTPQQSSL 277

Query: 324 ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                    A++++P   LA Q YE  +K+   T I   ++ G      +   L+R    
Sbjct: 278 RIKRMAYPVALVLSPTRELAIQTYEESRKFCFGTGIRTNVLYGGSEVRSQIMDLDR---- 333

Query: 375 QAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAPHVL- 424
            + II+ T    +D I   K        LIL   D     G   Q  ++ + +  PH L 
Sbjct: 334 GSDIIVATPGRLRDLIDRGKVNLKLIKFLILDEADRMLDMGFAPQIREIVEDSEMPHSLD 393

Query: 425 -----LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                + +AT     + L    L +     +    A    I   ++      +    +K+
Sbjct: 394 GRQTVMFSATFPREIQQLAKDFLHNYIFLTVGRVGATSGSIVQRVVYAEEDHKPRLLVKL 453

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           +L +G+    +            +   ++              IHG  S  ++E  +  F
Sbjct: 454 LLEQGEGLTVVFV--------EMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALRLF 505

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G   +L+AT V   G+D+ + + +I  +        +H++ GR GR           +
Sbjct: 506 RSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRI-GRTGRAGNTGLATSFVN 564

Query: 598 PPLSKNSYTRLSVLKNT 614
                     L+ L+ +
Sbjct: 565 ESNKPILRDLLAALEES 581


>gi|85103782|ref|XP_961600.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A]
 gi|74625334|sp|Q9P735|FAL1_NEUCR RecName: Full=ATP-dependent RNA helicase fal-1
 gi|16415977|emb|CAB88547.2| probable translation initiation factor eIF-4A [Neurospora crassa]
 gi|28923147|gb|EAA32364.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A]
          Length = 400

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 48  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 101

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+       HI+ GT     D
Sbjct: 102 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HIVSGTPGRVAD 157

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 158 MIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLP---------PATQVVVVSAT 208

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 209 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQ 267

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 268 AVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWAR 327

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 328 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTSE 372


>gi|254452993|ref|ZP_05066430.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238]
 gi|198267399|gb|EDY91669.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238]
          Length = 439

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 134/364 (36%), Gaps = 43/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG------Q 323
            PT  Q  AI      M+ ++ M        GSGKT    + M   +  E G       +
Sbjct: 19  DPTPIQAQAIPHA---MNGRDVM---GLAKTGSGKTAAFGLPMIDMLLKEQGKPEGKTAR 72

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA+Q  E ++ YT+ T +   ++ G      + + LER       +++ T 
Sbjct: 73  ALILAPTRELAKQIQENLEAYTKGTHLKTMLVVGGAGITGQIRKLER----GVDLLVATP 128

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D ++           L+L   D+    G    L+                P  +T+
Sbjct: 129 GRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAP---------LLAPERQTM 179

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     ++++      + P++  +    +  E IE+    +++  K   +   I++ 
Sbjct: 180 LFSATMPKLMAELAGAFL-KNPMRVQVDAPGKPVERIEQSVHFVAKAAKTDLLLELIDKH 238

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           ++         +   E+ + L        A IHG  S   ++  +  FK G   +L+AT 
Sbjct: 239 RDERAIVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVTILVATD 298

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +   +   +  +     +H++ GR  R       I    P           
Sbjct: 299 VAARGLDIPEVKHVYNYDLPNVAENYVHRI-GRTARAGADGMAIAFCAPDEMGELRDIQK 357

Query: 610 VLKN 613
            +K 
Sbjct: 358 AMKA 361


>gi|116668333|pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
           A Resolution
          Length = 374

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    +++   ++      QA+I+A
Sbjct: 23  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSVSVLQCLDIQVRETQALILA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 77  PTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 132

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 133 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEVLEMT 192

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 193 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 245

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 246 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       +        +             D
Sbjct: 306 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAVNFVKNDDIRVLRDIEQYYSTQID 364

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 365 EMPMNVADL 373


>gi|322516252|ref|ZP_08069184.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC
           49124]
 gi|322125316|gb|EFX96681.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC
           49124]
          Length = 528

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 34/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     +   E   QA+++A
Sbjct: 23  KPSPIQELTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLDKIRTEENTIQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ ++  + V  + G      + KAL       AHI++GT     D
Sbjct: 77  PTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLV 436
            I+   L L  +        DE    G        +++       LL +AT     + + 
Sbjct: 133 LIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRIG 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +  + D +  KI  K      +    I +   ++     +++  +  +   +  +     
Sbjct: 193 VQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPELSIVFGRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D
Sbjct: 249 ----KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +   + +   +      + +H++ GR GR  +    I    P 
Sbjct: 305 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGQSGQSITFVAPN 346


>gi|261380720|ref|ZP_05985293.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava
           NJ9703]
 gi|284796437|gb|EFC51784.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava
           NJ9703]
          Length = 469

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 125/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L           +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALDGRD------IMASAQTGSGKTAAFLLPTLQKLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET-------IVEATPSDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    +  ++   ++ E+L        K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKDPETIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|268592819|ref|ZP_06127040.1| ATP-dependent RNA helicase DeaD [Providencia rettgeri DSM 1131]
 gi|291311604|gb|EFE52057.1| ATP-dependent RNA helicase DeaD [Providencia rettgeri DSM 1131]
          Length = 643

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 169/442 (38%), Gaps = 56/442 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q+  I  ++           +     GSGKT    + +   ++     
Sbjct: 22  LNDLGYEKPSPIQQQCIPLLMDG------NDVLGMAQTGSGKTAAFSLPLLHNIDPDLKA 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++  ++ V  + G      R     R       I++
Sbjct: 76  PQILVLAPTRELAVQVAEAMSDFSKHMNRVNVVALYGG----QRYDVQLRALRQGPQIVV 131

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++           L+L   DE  R G  + +   ++Q        L +AT 
Sbjct: 132 GTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATM 191

Query: 430 --PIPRTLVLTSLGDIDISK---ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             PI R          +I     IT +P   +   T +  + + + ++  L+    +   
Sbjct: 192 PEPIRRITRRFMKDPKEIRIQASITTRPDIAQSYWT-VYGMRKNEALVRFLEAEDFDAAI 250

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +               + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 251 IFV----------RTKNATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 299

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 300 LIATDVAARGLDVERISLVVNYDIPMDAESYVHRI-GRTGRAGRAGRALLFVENRERRLL 358

Query: 605 YTRLSVLKNTEDGFLIAEEDL--KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
                 +K T     + + DL  ++R+      I+Q    +   +  + + SLL      
Sbjct: 359 RNVERTMKLTIPEVELPDADLLSQRRQAKFAEKIQQ----QLESSDLDQYRSLL------ 408

Query: 663 AKHILTQDPDLTSVRGQSIRIL 684
           AK   ++D D+ ++    +++ 
Sbjct: 409 AKMSPSEDVDMETLAAALLKMA 430


>gi|220927762|ref|YP_002504671.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
 gi|219998090|gb|ACL74691.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
           H10]
          Length = 542

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 140/369 (37%), Gaps = 39/369 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +PT+ Q  AI  IL +         I+    GSGKT V  +++       EAG Q +I+ 
Sbjct: 25  TPTEVQSKAIPHILNNED------LIVMSKTGSGKTAVFGVSILQLTNPEEAGPQGLILT 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I+K  +  +     I G        + L +       I+ GT     D
Sbjct: 79  PARELAVQVDNDIRKMAKYLKHKTTAIYGQHNINLETQILNK----GVSIVTGTPGRVFD 134

Query: 389 SIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGD 442
            I +  L    +     DE  R      L          V ++   P  R TL+ ++   
Sbjct: 135 HISHGTLSTKNIRFLVLDEADRMLDMGFLDQV-------VRIVKTLPKERITLLFSATMP 187

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ-IEEKKE---- 497
            +I  I ++     P+   I    +  + I ++   ++  +K   +    I EK E    
Sbjct: 188 PEIHNICKRYMN-NPVTIEIESQTKTVDTIHQVYYRVNYNEKNTQLNRLLIVEKPESCMI 246

Query: 498 -SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N ++ V+R  S       S   +HG +    + + +  FK G   +L+AT V   GI 
Sbjct: 247 FCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILVATDVAARGIH 306

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           + D S++I  +  +     +H++ GR GR         L       + Y     +     
Sbjct: 307 IEDLSLVINYDVPNDKDNYVHRI-GRTGRAGHEGRAFSLVTGDDIISLYEIEEHI----- 360

Query: 617 GFLIAEEDL 625
           G LI EE+L
Sbjct: 361 GTLILEEEL 369


>gi|73662111|ref|YP_300892.1| ATP-dependent RNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123643052|sp|Q49Z29|Y802_STAS1 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SSP0802
 gi|72494626|dbj|BAE17947.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 506

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 134/350 (38%), Gaps = 37/350 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L+++ F+  T  Q+ +I   L+          + Q   G+GKT    I +   V  + G 
Sbjct: 17  LQSMGFNEATPIQKESIPLALEGKDV------LGQAQTGTGKTGAFGIPLIEKVADQEGV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q++I+AP   LA Q  E +K + +   I V  + G MP   + KAL++       I++GT
Sbjct: 71  QSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKALKK----GPQIVVGT 126

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +          + LIL   DE    G    +K                   +T
Sbjct: 127 PGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQ--------RQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I  + ++   + P+    +     D  IE    ++ E +K       ++ 
Sbjct: 179 MLFSATMPKAIQTLVQQFM-KSPVIVKTMNNEMSDPQIEEYYTIVKELEKFDTFTSFLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +      F     R + L     S       +HG ++   +  V+  FKN    +L+AT
Sbjct: 238 HQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   S +   +      +  H++ GR GR  +    I   +P
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKKGVAITFVNP 346


>gi|53712950|ref|YP_098942.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46]
 gi|60681162|ref|YP_211306.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|253563072|ref|ZP_04840529.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_2_5]
 gi|265763047|ref|ZP_06091615.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16]
 gi|52215815|dbj|BAD48408.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46]
 gi|60492596|emb|CAH07368.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|251946848|gb|EES87130.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_2_5]
 gi|263255655|gb|EEZ27001.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16]
          Length = 427

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 125/344 (36%), Gaps = 34/344 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQAVI 326
           SPT  QE +I  +LQ          +     G+GKT    I +   +       G +A++
Sbjct: 23  SPTPIQEQSIPILLQGKD------LLGCAQTGTGKTAAFSIPILQKLYKTDHRKGIKALV 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  + Y + T +   +I G + Q  +  AL         I++ T    
Sbjct: 77  LTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRS----GIQILVATPGRL 132

Query: 387 QDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            D I         L   ++DE  R      +   +       +L       +TL  ++  
Sbjct: 133 LDLISQGFISLSSLDFFVLDEADRMLDMGFIHDIK------RILKLLPARRQTLFFSATM 186

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
             +I  +       KP K  + P +   ++I +    + + +K   +   +++       
Sbjct: 187 PPEIETLANS-MLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLLKDTSIESVL 245

Query: 497 -ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  +   ++   +          IHG  +   ++  + +FKN T + LIAT +   GI
Sbjct: 246 IFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIATDIAARGI 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV   S +I     +     +H++ GR GR       I      
Sbjct: 306 DVDQLSHVINYELPNVPETYVHRI-GRTGRAGHEGVAISFCESE 348


>gi|325142563|gb|EGC64962.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           961-5945]
 gi|325198512|gb|ADY93968.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           G2136]
          Length = 462

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 126/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPSALEGRD------IMASAQTGSGKTAAFLLPTLQKLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET-------IVEATPTDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    +  ++   ++ E+L        K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|319947383|ref|ZP_08021615.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
           700641]
 gi|319746323|gb|EFV98584.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
           700641]
          Length = 524

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 132/357 (36%), Gaps = 22/357 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +   L L  ++        + L +        ++  +  P  R  +L S    D  K   
Sbjct: 135 KRKALKLHDIETLILDEADEMLNMGFLEDIEDII--SRVPENRQTLLFSATMPDAIKRIG 192

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------NFRSVV 504
               ++P    I       E++++  + + E +K   +   ++  +          +  V
Sbjct: 193 VQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRV 252

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +      +        IHG +    +  V+  FKNG   +L+AT V   G+D+   + + 
Sbjct: 253 DELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVY 312

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
             +      + +H++ GR GR  +    I    P          ++ K    G   A
Sbjct: 313 NYDIPQDPESYVHRI-GRTGRAGKSGQSITFVSPNEMGYLQIIENLTKKRMKGLKPA 368


>gi|297830638|ref|XP_002883201.1| hypothetical protein ARALYDRAFT_479492 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329041|gb|EFH59460.1| hypothetical protein ARALYDRAFT_479492 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 408

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 136/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ A+  ILQ          I Q   G+GKT +  +++   V+      QA+I++
Sbjct: 57  KPSAIQQRAVMPILQGRDV------IAQAQSGTGKTSMIALSVCQVVDTSSREVQALILS 110

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I+    +  I      G        + LE       H++ GT     D
Sbjct: 111 PTRELATQTEKTIQAIGLHANIQAHACIGGKSVGEDIRKLEH----GVHVVSGTPGRVCD 166

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        IL   DE    G + ++            V L++AT     L +T
Sbjct: 167 MIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMT 226

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    +  KI  K      + IK   + + + +   + L  +       +A   C     
Sbjct: 227 SKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT--- 283

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+  +        +++ +HG M   +++ +M+ F++G  ++LI T V   G
Sbjct: 284 ------KRKVDYLSEKMRSNNFTVSSMHGDMPQKERDEIMNQFRSGESRVLITTDVWARG 337

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV   S++I  +  +     +H++ GR GR       I        K            
Sbjct: 338 IDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ 396

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 397 IDEMPMNVADL 407


>gi|296420816|ref|XP_002839964.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636172|emb|CAZ84155.1| unnamed protein product [Tuber melanosporum]
          Length = 593

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 135/379 (35%), Gaps = 52/379 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------------- 319
           PT  Q   I  IL+          +     GSGKT   LI + + +              
Sbjct: 168 PTPIQRYCIPAILEGHD------LLSCAQTGSGKTAAFLIPILSKLMGKASSLAAPRPVP 221

Query: 320 -------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                  A    +++AP   LA Q ++  +++   +++   ++ G    A +R  L++  
Sbjct: 222 GSTEPYIAQPLVLVVAPTRELATQIFDESRRFCYRSKLRPCVVYGGADSATQRMELKK-- 279

Query: 373 HGQAHIIIGTHALFQDSIQYYK---------LILVIVDEQHRFGVQ-QRLKLTQKATAPH 422
                I++GT     D I+  +         +++   DE    G + Q  KL Q +   +
Sbjct: 280 --GCDILVGTPGRLADFIERGRILSLRRLKFVVIDEADEMLDMGFEPQIRKLLQSSGNAN 337

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
                     + L+ ++     I K+         +   +  I    E I +  + + E 
Sbjct: 338 ED-----DDQQVLMFSATFQKAIRKLARDFLSDDFVHIKVGRIGSTHENITQRVLWVDEL 392

Query: 483 KKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           +K   I   +            N + V +  +    +       IHG  +  ++E  + +
Sbjct: 393 RKKEAIYDLLCTAPPARTLIFVNHKRVADSLDDYLYNLKLPTTSIHGDRTQREREDAILA 452

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F++G C ++IAT V   G+D+ +   +I  +        +H++ GR  R          Y
Sbjct: 453 FRSGKCPIMIATAVAARGLDIKNVMHVINYDMVQNIDEYIHRI-GRTARIGNRGLATSFY 511

Query: 597 HPPLSKNSYTRLSVLKNTE 615
           +      +   + VL  + 
Sbjct: 512 NSSNEGIASDLVKVLLESS 530


>gi|225463253|ref|XP_002274688.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 549

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 68/379 (17%), Positives = 139/379 (36%), Gaps = 45/379 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            P+  Q  A   +L      +    I     GSGKTL   +     V +  +        
Sbjct: 151 QPSPIQSHAWPFLL------DHRDFIGIAATGSGKTLAFGVPAMMHVLSKRKSKTSKGVN 204

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              ++++P   LAQQ  + + +  ++  +    + G   +  +  +L+        I+IG
Sbjct: 205 PLCLVLSPTRELAQQISDVLCEAGKHCGVKSVCLYGGTSKGPQISSLKS----GVDIVIG 260

Query: 382 THALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T    +D I+     L  V     DE  R                  +L    P  + ++
Sbjct: 261 TPGRLKDLIEMGVCCLTEVSFVVLDEADRMLDMGFE------PEVRSILSQTCPARQMVM 314

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWICPQIEE 494
            ++   + + ++ ++     P+K VI   +     +V++ ++V+    +    +    + 
Sbjct: 315 FSATWPLPVHQLAQEFMDPNPVKVVIGSEDLAANHDVMQIVEVLDDRSRDERLLTLLGKY 374

Query: 495 KKESNFR--------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            K    R            R  ++ +    ++  IHG  +   + + +  FK G+C L+I
Sbjct: 375 HKSQRNRVLVFVLYKKEAARVENMLQRRGWNVVSIHGDKAQQARTAALSLFKKGSCPLMI 434

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ D  ++I  +        +H++ GR GR  +       +       +  
Sbjct: 435 ATDVAARGLDIPDVEVVINYSFPLTTEDYVHRI-GRTGRAGKKGVAHTFFMQENKGLAGE 493

Query: 607 RLSVLKNTEDGFLIAEEDL 625
            ++VLK       I   DL
Sbjct: 494 LVNVLKEAG---QIVPADL 509


>gi|146276411|ref|YP_001166570.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554652|gb|ABP69265.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 453

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/362 (19%), Positives = 131/362 (36%), Gaps = 43/362 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAV 325
           T  Q  AI  ++Q       ++ + Q   G+GKTL   + +   +            +A+
Sbjct: 34  TPIQVEAIPHVMQG----RDLMGLAQ--TGTGKTLAFGLPLLHRLLGVGHPPPPRTIRAL 87

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+AP   L  Q    ++ +T+ T + V  ITG      + + L R     A I++ T   
Sbjct: 88  ILAPTRELVSQIAANLELFTKGTPVKVVTITGGASINRQTERLAR----GADIMVATPGR 143

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D +            L+L   D+    G    L+   +               +TL+ 
Sbjct: 144 LIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLK---------RQTLLF 194

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI------CPQ 491
           ++     I ++      R+P++  + P  +  E I +    + +G KA  +       P 
Sbjct: 195 SATMPKLIEELAHTFL-REPVRVQVAPPGKPVEKIAQGVHFIPQGDKAKLLESYLLKHPG 253

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +       +   E+   L   +      IHG  S   ++  +  F++GT  +L+AT V 
Sbjct: 254 EQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGTLDVLVATDVA 313

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+     +   +  +     +H++ GR  R     S +    P           +L
Sbjct: 314 ARGIDIPGVRHVYNYDMPNVPENYVHRI-GRTARAGAEGSAVAFVAPAEMDEFRAVEKLL 372

Query: 612 KN 613
           K 
Sbjct: 373 KQ 374


>gi|312129179|ref|YP_003996519.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311905725|gb|ADQ16166.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 373

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 131/362 (36%), Gaps = 35/362 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N+   +AQ +      S T  QE AI  +LQ          +     G+GKT    I +
Sbjct: 6   LNLSAPLAQALQEYGYTSLTPIQEQAIPKVLQGQD------LLGCAQTGTGKTAAFAIPI 59

Query: 315 AAAVEAGG------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
              +          + +I+ P   LA Q  +  K Y+++ +I   +I G + Q  +   L
Sbjct: 60  LERILQNPKNKRQIRVLILTPTRELAIQIGDNFKAYSKHIKISHAVIFGGVNQNKQVNQL 119

Query: 369 ERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++       I+I T     D      ++   L  +++DE  R      +   +K      
Sbjct: 120 KQ----GVEILIATPGRLLDLMSQGFVRLNGLDTLVLDEADRMLDMGFVHDVKK------ 169

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            ++T  P  R  +  S       +         P    + P++   E +++    + + +
Sbjct: 170 -ILTKIPTERQTLFFSATMPQSIRKFAASILTNPAYVEVTPVSSTAETVKQGVYFVDKKE 228

Query: 484 KAYWICPQIEEKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           K   +   ++++           +   ++            A IHG  S   ++  ++ F
Sbjct: 229 KTPLLINILKDQSTDRTLIFTRTKHGADKLVKQLGKVGIPAAAIHGNKSQNARQRALEDF 288

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+    +LIAT +   GID+ +   +I     +     +H++ GR GR       +    
Sbjct: 289 KSSRLNVLIATDIAARGIDIEELPYVINYELPNVPETYVHRI-GRTGRAGAEGVAVSFCD 347

Query: 598 PP 599
             
Sbjct: 348 QE 349


>gi|282897303|ref|ZP_06305305.1| DEAD/DEAH box helicase-like protein [Raphidiopsis brookii D9]
 gi|281197955|gb|EFA72849.1| DEAD/DEAH box helicase-like protein [Raphidiopsis brookii D9]
          Length = 497

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 78/351 (22%), Positives = 136/351 (38%), Gaps = 38/351 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L N+ F+ PT  Q  AI  +L           + Q   G+GKT    + +   ++     
Sbjct: 19  LENMGFTTPTNIQSQAIPQLLAGRDV------VGQSQTGTGKTAAFSLPILERLDPNKRA 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q ++ I ++  ++++ V  I G      +   L+R      H+++G
Sbjct: 73  VQALVLTPTRELAMQVHDAISQFMGDSELRVLAIYGGQSIDRQMIQLKR----GVHVVVG 128

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATPI 431
           T     D ++   L L  V        DE    G    +   L+Q        L +AT  
Sbjct: 129 TPGRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPQERQTALFSATMP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTV--IIPINRIDEVIERLKVVLSEGKKAYW 487
           P  R LV   L       + +  A    I  V  +IP +       +  + + + + A  
Sbjct: 189 PSIRQLVNKFLNSPVTVTVEQPKATPTKINQVAYLIPRHWTKAKALQPILEMEDPETALI 248

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        R+  E  N L      S+   HG +S   +E ++  F+N   + ++A
Sbjct: 249 FVRT--------RRTAAELTNQLQSAGH-SVDEYHGDLSQQARERLLTRFRNRQVRWVVA 299

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           T +   G+DV   S +I  +        +H++ GR GR  +  + I L  P
Sbjct: 300 TDIAARGLDVDLLSHVINFDLPDSVETYVHRI-GRTGRAGKEGTAISLVQP 349


>gi|254294585|ref|YP_003060608.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
 gi|254043116|gb|ACT59911.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
          Length = 769

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 68/385 (17%), Positives = 135/385 (35%), Gaps = 32/385 (8%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++   + + + +    +PT  Q  AI  +++          +     G+GKT    + +
Sbjct: 7   FDLASPVLKALDKEGYETPTPIQAQAIPLVMEG------GDILGIAQTGTGKTAAFALPL 60

Query: 315 AAAV-----EAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +       G    + +++AP   LA Q  E   KY Q   + V  + G +P   + +
Sbjct: 61  LHHLCKLPDMPGPGAVRCLVIAPTRELASQIAEAFSKYGQCLSLRVLKVFGGVPIRKQMR 120

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            L R     A +++ T     D ++   + L  V++       Q L L        +   
Sbjct: 121 DLHR----GADVLVATPGRLIDLMEQGAVDLSYVEKLVLDEADQMLDLGFIHPLRRI--A 174

Query: 427 TATPI-PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
            A P   +TL  ++    ++S +  +        ++       + V + +  V    K  
Sbjct: 175 AAVPKERQTLFFSATMPSNVSGLANQFLTNPKKVSIAQESTTAERVTQTMSHVNQAQKGP 234

Query: 486 YWICPQIEEKKES-----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             +    +E  +        +   ++  S   +       IHG  S   +E  +++F+NG
Sbjct: 235 LLLVNLQDESIDRALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNG 294

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+AT +   GIDV   S +      +     +H++ GR  R       I       
Sbjct: 295 DSKVLVATDIAARGIDVPGVSHVFNYEIPNVPEQYVHRI-GRTARAGREGKAISFVSRDE 353

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDL 625
            K        ++       I   DL
Sbjct: 354 KKYLLDIQRQIR-----MKIPIVDL 373


>gi|156084974|ref|XP_001609970.1| p68-like protein [Babesia bovis]
 gi|154797222|gb|EDO06402.1| p68-like protein [Babesia bovis]
          Length = 529

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 138/369 (37%), Gaps = 50/369 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       L           I   + GSGKTL  L+     + A        G  
Sbjct: 130 APTPIQVQGWPIALSGRDV------IGIAETGSGKTLAFLLPAVVHINAQHLLRPGDGPI 183

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   L +Q  +   ++  +++I   +  G +P+  +   L+R       I++   
Sbjct: 184 VLVLAPTRELVEQIRQQCVQFGASSRIKSSVAYGGVPKRQQMYELKR----GVEILLACP 239

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       ++  +++DE  R          +K  +         P  +TL+ +
Sbjct: 240 GRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR------PDRQTLMWS 293

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN--------------RIDEVIERLKVVLSEGKK 484
           +    ++  +       +P+   +  ++                 E   +LK +L +  +
Sbjct: 294 ATWPREVQSLAHDLCREEPVHINVGSLDLKTCHNVSQEVFVIEEHEKRSQLKKILGQIGQ 353

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              I    + KK ++  +   R +            IHG     ++  V++ FK+G   +
Sbjct: 354 GTKILIFTDTKKTADSITKELRLDGW------PALSIHGDKKQEERNWVLNEFKSGKHPI 407

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           ++AT V   G+DV D  ++I  +  +     +H++ GR GRG    +      P  ++ +
Sbjct: 408 MVATDVASRGLDVRDVKVVINFDFPNQIEDYVHRI-GRTGRGGNKGASYTFLTPDKNRVA 466

Query: 605 YTRLSVLKN 613
              + +++ 
Sbjct: 467 RELVKLMRE 475


>gi|296282684|ref|ZP_06860682.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
          Length = 472

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 73/363 (20%), Positives = 135/363 (37%), Gaps = 40/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  +L           I     G+GKT   ++ M   + +G       +++
Sbjct: 23  EPTPIQAQAIPPVL------MMKDIIGIAQTGTGKTASFVLPMIDILASGRRRALMPRSL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+AP   LA Q  E  +KY +   + + ++ G +    + KAL         ++I T   
Sbjct: 77  ILAPTRELAAQVAENFEKYGKQHDLQLALLIGGVQMGDQVKALNE----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIPR 433
             D  +  K++L      ++DE  R      +   +            LL +AT  P   
Sbjct: 133 LMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIETICSKLPEPRQTLLFSATMPPPIE 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L    L +    +++   +  + I    IP+   ++      ++ ++  +   I     
Sbjct: 193 KLAQKFLTNPKRIEVSRAASTNENITAFKIPVKAREKRETLRWLLANDHVETAIIF---- 248

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               +   +V E   SL  H  +S   IHG M    + + ++ FK G   +L+A+ V   
Sbjct: 249 ---ANRKTTVREINKSLQSHGFAS-GEIHGDMDQSSRIAELNRFKAGEVNILVASDVAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   S +   +        +H++ GR GR                 ++    +V K 
Sbjct: 305 GLDIKGVSHVFNFDTPWHPDDYVHRI-GRTGRAGAKGRAFTFVTDD---DAEAIANVEKL 360

Query: 614 TED 616
           TE 
Sbjct: 361 TES 363


>gi|294101359|ref|YP_003553217.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
           DSM 12261]
 gi|293616339|gb|ADE56493.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
           DSM 12261]
          Length = 555

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 95/452 (21%), Positives = 170/452 (37%), Gaps = 70/452 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMA 328
           +PT  Q+  + +      +      I++   GSGKTL  L+ +   + AG +    +I++
Sbjct: 26  TPTPVQDRVLSE------KIFEKDIIVRAKTGSGKTLAFLLPLLQKITAGERESKVLILS 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L+QQ ++  K +     +    + G M  + + ++L   +     ++ GT     D
Sbjct: 80  PTRELSQQIWKEAKWFGNYINVSAASLVGGMDMSQQIRSLRDGSA----VVTGTPGRVLD 135

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRTLV 436
            I+   L        +L   D     G ++ L   L        V L +AT     + L 
Sbjct: 136 HIRRGTLDTSGIKIVVLDEGDHMLDLGFKEELEAILDSLPNCQRVWLFSATMPAEIKNLA 195

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK-KAYWICPQIEEK 495
              L       +TE+    + I   +  +    +    + V+L E   +A   C    E 
Sbjct: 196 KRYLKTPVFISLTEEGEAHEDITHEVYLVPTRHKEEGLINVLLWEKPSRAIVFCHTRAET 255

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E   R   E F ++          +HG MS  ++   +  F++G   LL+AT V   G+
Sbjct: 256 VELTRRLHDENFQAM---------CLHGEMSQRERNMALSQFRSGRTPLLVATNVAARGL 306

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS------ 609
           DV   S +I           +H+  GR GR       +L+  P  +    + +       
Sbjct: 307 DVEGVSHVIQMGLPDNRETFVHR-SGRTGRAGHEGRNLLVLSPKEATGFKSMVKTSTIPI 365

Query: 610 VLKNTEDGFLIAEEDLKQRK----EGEILGIKQSGMPKFLIAQPELHDSLLEI------- 658
             KN  D      +D+++++    E  +   +    P+      E  DSLLE        
Sbjct: 366 TWKNVPD-----PKDIRKKQRISYEERVFAAEHYETPE----NLEWADSLLECNESRAMI 416

Query: 659 --------ARKDAKHILTQDPDLTSVRGQSIR 682
                   +RK+A + LT D +    RG++ R
Sbjct: 417 ARLLGLLFSRKNAGYELTADLEQDLKRGRTPR 448


>gi|94314203|ref|YP_587412.1| 23S rRNA ATP-dependent RNA helicase [Cupriavidus metallidurans
           CH34]
 gi|93358055|gb|ABF12143.1| ATP-dependent RNA helicase, specific for 23S rRNA [Cupriavidus
           metallidurans CH34]
          Length = 467

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 82/454 (18%), Positives = 163/454 (35%), Gaps = 65/454 (14%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  Q +++   L           I Q   GSGKT    +++   ++      QA+++ P 
Sbjct: 31  TPIQAASLPLALAGHD------LIAQARTGSGKTAAFALSLLHRLDPRPLDVQALVLCPT 84

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + I++  +    + V  ++G  P   + ++L       AH+++GT     D 
Sbjct: 85  RELADQVTQEIRRLARAEDNVKVLTLSGGTPIRPQVESLVH----GAHVVVGTPGRIIDH 140

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           +    L        +L   D     G    +               A    +TL+ ++  
Sbjct: 141 LDRGSLNIDAINTLVLDEADRMLDMGFHDDIAFIASH---------APKDRQTLLFSATY 191

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---- 497
              I K+  +   +   KTV +        I +    + EG +   +   ++  +     
Sbjct: 192 PAAIDKLAHRFLRQP--KTVKVEEAHDAATITQRFYEVEEGDRLNAVGRLLDHFRPATTL 249

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N ++       L      +   +HG +   D++ V+  F N +C +L+AT V   G+
Sbjct: 250 AFCNTKARCRDLADLLRAQGYAALELHGDLDQRDRDQVLVQFANRSCSVLVATDVAARGL 309

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL------------SKN 603
           D+     +I  +        +H++ GR GR  E  S   L                  + 
Sbjct: 310 DIAQLEAVINVDVTPDPEVHVHRV-GRTGRAGEAGSAFSLVSLDEMGRVGNIEQHQGGEF 368

Query: 604 SYTRLSVLKNTEDG-FLIAEEDLKQRK-------EGEILG--IKQSGMPKFLIAQPELHD 653
            +  L  LK +  G  L     L+           G+ILG    ++G  K  I +  + +
Sbjct: 369 EWHALDELKPSGGGRLLPPMVTLQMLGGRKEKIRPGDILGALTGEAGFTKEQIGKISVME 428

Query: 654 S--LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
               + + R   +  + +  +   V+G+ +R+ +
Sbjct: 429 MSTYIAVDRAIGREAVKRLNE-GKVKGRKVRVRM 461


>gi|302341870|ref|YP_003806399.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
 gi|301638483|gb|ADK83805.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
          Length = 573

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 78/340 (22%), Positives = 128/340 (37%), Gaps = 22/340 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SPT  Q + I  +L+          I Q   G+GKT    + +   +  G    QA+++A
Sbjct: 38  SPTPIQTAMIPLMLEGRDV------IGQAQTGTGKTAAFGLPLLHNISPGVGQAQALVLA 91

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E ++ Y +     V  + G  P   +   L +       +++GT     D
Sbjct: 92  PTRELAIQVAEALQGYGRKMGARVMAVYGGAPYGLQISRLRK----GVDVVVGTPGRVLD 147

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            I    L L +V+        + L +   A    +L   ATP  R   L S       + 
Sbjct: 148 LIGQKALRLDMVETVVIDEADEMLSMGFIADIQAIL--EATPSQRQTALFSATLPPAIRQ 205

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVE 505
             +    +P    + P     E +E+   +L E  K   +C  +E +       F     
Sbjct: 206 MSQSYMVEPQSVSVSPRQLTVEAVEQRYYLLDERDKLAALCRLLEVEPVASALIFCRTKA 265

Query: 506 RFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
               L +  ++       I+G +S   +  V+  F+N   KLL+AT V   G+D+ D S 
Sbjct: 266 GTGQLADELSARGFAAEAINGDLSQEARIRVLGRFRNNQLKLLVATDVAARGLDIDDISH 325

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           +I  +        +H++ GR GR       I L  P    
Sbjct: 326 VINFDPPQDPEVYVHRI-GRTGRAGRDGVAISLLSPKDRW 364


>gi|209694846|ref|YP_002262774.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida
           LFI1238]
 gi|208008797|emb|CAQ78997.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida
           LFI1238]
          Length = 434

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 131/356 (36%), Gaps = 27/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
             T  Q+ AI    +          +     G+GKT    + +   +            +
Sbjct: 23  KLTPIQQKAIPLARKGHD------ILANAQTGTGKTAAFALPVIQRLLDTKKSATRRSAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA+Q    I  YT+ T + V  + G    + + +AL+        I++ T 
Sbjct: 77  ALILAPTRELAEQIAVNIISYTKYTSLKVTAVFGGKKMSSQERALDP----GVDILVATP 132

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
              Q+ I+   + +  + E   F    R+       A   ++M     P+ ++ ++    
Sbjct: 133 GRLQEHIEEGNVSIANL-EFLVFDEADRMLDMGFVNAIRNIMMEVNSAPQIMLFSATSSA 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---F 500
            ++K+      RKP +  +   N     I  +   + E +K   +   I  K       F
Sbjct: 192 QMNKLASD-ILRKPKRISVDRENMTATTISHVVYPVDEERKTELLSELIGRKNWQQVLVF 250

Query: 501 RSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +  E  N++ +          I HG  +   +   ++ FK G  ++++AT V   G+D+
Sbjct: 251 VNYKETANNIVKELKLDGIKAVICHGDKAQSARRRALEEFKEGKARVMVATDVAARGLDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            D   +I  +        +H++ GR GR  +    I               ++++ 
Sbjct: 311 ADLPHVINYDMPFLAEDYVHRI-GRTGRAGKKGHAISFVSREEELTVVQVETLIQQ 365


>gi|290473453|ref|YP_003466320.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           bovienii SS-2004]
 gi|289172753|emb|CBJ79524.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           bovienii SS-2004]
          Length = 662

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 76/402 (18%), Positives = 150/402 (37%), Gaps = 39/402 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I  +L           +     GSGKT    + +   ++A     Q +++A
Sbjct: 29  KPSPIQQQCIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLHNIDAELKAPQILVLA 82

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   ++++  + + V  + G      R     R       +++GT     
Sbjct: 83  PTRELAVQVAEACSEFSKQMRSVNVVALYGG----QRYDVQLRALRQGPQVVVGTPGRLL 138

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTL 435
           D ++           L+L   DE  R G  + +   ++Q        L +AT     R +
Sbjct: 139 DHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATMPEAIRRI 198

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               + D    +I      R  I      ++ + +    ++ + +E   A  I  + +  
Sbjct: 199 TRRFMNDPQEVRIQSSVTTRPDISQSYWSVHGVRKNEALVRFLETEDFDATIIFVRTKN- 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                 + +E   +L  H  +S A+ +G M+   +E  ++  K+G   +LIAT V   G+
Sbjct: 258 ------ATLEVAETLERHGYNSAAL-NGDMNQALREQTLERLKDGRLDILIATDVAARGL 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S+++  +      + +H++ GR GR       +L       +        +K T 
Sbjct: 311 DVERISLVVNYDIPMDAESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNVERTMKLTI 369

Query: 616 DGFLIA-EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
               +   E L QR+  +     Q    +   +  + + +LL
Sbjct: 370 PEVELPNAELLSQRRLEKFAAKVQ---QQLESSDLDQYRALL 408


>gi|120609836|ref|YP_969514.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588300|gb|ABM31740.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 489

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/381 (18%), Positives = 132/381 (34%), Gaps = 42/381 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
           S T  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 25  SMTPIQAEAIPVVLTGQDV------MGAAQTGTGKTAAFSLPLLQRLLKHENSSTSPARH 78

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   LA Q  + I  Y + T++   ++ G M    +   L++       +++
Sbjct: 79  PVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTLELKK----GVEVLV 134

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFG-----VQQRLKLTQKATAPHVLLMTAT- 429
            T     D I+    +L  V     DE  R          +  L+        LL +AT 
Sbjct: 135 ATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKTRTTLLFSATF 194

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  + L  + L +    ++         ++     +N  D+      V+ + G K  ++
Sbjct: 195 SPEIKRLAGSYLQNPVTIEVARPNETASTVEQRFYSVNDDDKRRAIHHVLRTRGVKQAFV 254

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R +   E      A +HG  S  ++   +D+FK G   LL+ T
Sbjct: 255 FV--------NSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAFKRGEVDLLVCT 306

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D   +   +        +H++ GR GR       + L     ++      
Sbjct: 307 DVAARGLDIKDVPAVFNFDVPFNAEDYVHRI-GRTGRAGASGLAVTLVSSSDARLVADIE 365

Query: 609 SVLKNTEDGFLIAEEDLKQRK 629
            + K   D   +  E+ + R 
Sbjct: 366 KLTKKKIDLEALEVEEDRPRG 386


>gi|255719590|ref|XP_002556075.1| KLTH0H04466p [Lachancea thermotolerans]
 gi|238942041|emb|CAR30213.1| KLTH0H04466p [Lachancea thermotolerans]
          Length = 553

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 141/370 (38%), Gaps = 43/370 (11%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------ 319
           +   P  PT  Q  +   +L           +   + GSGKT    +     ++      
Sbjct: 158 ISKFP-KPTPIQAVSWPYLLSGKDV------VGVAETGSGKTFAFGVPAIHNLKTADAKS 210

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G Q ++++P   LA Q Y+ +   T+   +    + G +P+  +R  L++       ++
Sbjct: 211 QGVQVLVISPTRELASQIYDNLILLTKKAGVNCCCVYGGVPKDEQRSQLKKS-----QVV 265

Query: 380 IGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQK------ATAPHVLLMTA 428
           + T     D I+        +  +++DE  R   +   +  ++      AT    L+ TA
Sbjct: 266 VATPGRLLDLIEEGSARLSNVKYLVLDEADRMLEKGFEEDIKRIIGSTKATGRQTLMFTA 325

Query: 429 TPIPRTLVLTSLGDIDISKI-----TEKPAG--RKPIKTVIIPINRIDEVIERLKVVLSE 481
           T       L +       KI      E  A      I  VI P  +  +++E LK   S 
Sbjct: 326 TWPKEVRELANTFMDSPVKISIGNRDELSANKRITQIVEVIDPFKKDRKLLELLKKYQSG 385

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            +K   +      KKE+       R     ++   ++A IHG +S   +   ++ FK+G 
Sbjct: 386 ARKNDKVLIFALYKKEA------ARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGE 439

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   G+D+ +   +I           +H++ GR GR     +   L+     
Sbjct: 440 SNMLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRI-GRTGRAGLTGTAHTLFTEQEK 498

Query: 602 KNSYTRLSVL 611
             +   ++VL
Sbjct: 499 HLAGALVNVL 508


>gi|169769538|ref|XP_001819239.1| ATP-dependent RNA helicase dbp3 [Aspergillus oryzae RIB40]
 gi|91206543|sp|Q2UMH8|DBP3_ASPOR RecName: Full=ATP-dependent RNA helicase dbp3
 gi|83767097|dbj|BAE57237.1| unnamed protein product [Aspergillus oryzae]
          Length = 498

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 87/428 (20%), Positives = 159/428 (37%), Gaps = 58/428 (13%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIP-F-SPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +      I  +        +   +  F SPT  Q +    +            I   + 
Sbjct: 73  SENVMRPIISFSHLPPCKDDLYAPLSSFKSPTSIQSATWPLLFAGRDV------IGIAET 126

Query: 303 GSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           GSGKTL   +     ++             AVI++P   LA Q Y+ + K++ +  + V 
Sbjct: 127 GSGKTLAFGLPCLKKIQDSAMTKQKPYRPLAVIISPTRELAMQIYDQLLKFSGSVGVRVA 186

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
            + G + +  +R+AL+      A +++ T    +D     S+   K+  +++DE  R   
Sbjct: 187 CVFGGVRKEEQREALK-----TAGVVVATPGRLKDLQNDGSVDLGKVKYLVLDEADRMLD 241

Query: 407 -GVQQRLKLT---QKATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGR----- 455
            G +Q +K        +    ++ TAT  P  R L  T +       I   P+       
Sbjct: 242 KGFEQDIKDIIRPMPVSKRQTIMFTATWPPSVRDLASTFMSSPVTVTIGGDPSADPRANT 301

Query: 456 --KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             K +  V+ P  +   +++ L        +   +      KKE+       R   L   
Sbjct: 302 RIKQVVEVVKPHEKESRLVQLLNRSQRGVPEPEKVLAFCLYKKEAM------RIERLLRT 355

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +A IHG +S  ++   +D+FK G   +L+AT V   G+D+     +I         
Sbjct: 356 KGFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPSVKQVINVTFPLTVE 415

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL--KQRKEG 631
             +H++ GR GR       + L+       S   ++VL+        A++D+     K G
Sbjct: 416 DYVHRI-GRTGRAGAEGHAVTLFTETDKAQSGALINVLRA-------AKQDIPEDLLKFG 467

Query: 632 EILGIKQS 639
             +  KQ 
Sbjct: 468 TTVKKKQH 475


>gi|325577637|ref|ZP_08147912.1| ATP-dependent RNA helicase DeaD [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160382|gb|EGC72508.1| ATP-dependent RNA helicase DeaD [Haemophilus parainfluenzae ATCC
           33392]
          Length = 612

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 159/437 (36%), Gaps = 49/437 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
            ++ F  P+  Q++ I  +L+          +     GSGKT    + + A ++      
Sbjct: 21  SDLGFETPSPIQQACIPALLEGRDV------LGMAQTGSGKTAAFSLPLLAKIDPAAKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  + + +    I +  + G      R     R     A +++G
Sbjct: 75  QLLVMAPTRELAIQVADACEHFMKYAKGINIVTLYGG----QRYDIQLRALKQGAQVVVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I    L        +L   DE  R G    +           ++       +
Sbjct: 131 TPGRILDHIHRNTLNLSELKAIVLDEADEMLRMGFIDDV---------ETVMAELPEEHQ 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQI 492
           T + ++     I +IT++         + +  +   ++ +    V      +A     ++
Sbjct: 182 TALFSATMPEPIRRITKRFMNNPQEVKIKVNNDNAPDIEQNCWYVQGFRKNEALLRFLEV 241

Query: 493 EEKKESNFRSVVER----FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           EE   +   +  +        L E      A ++G M+   +E  +D  +NG+  +++AT
Sbjct: 242 EEFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDIVVAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+   S+++  +      + +H++ GR GR       +L   P   +      
Sbjct: 302 DVAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIE 360

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGI-KQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            ++K   +   +           E+L   ++      +  Q E HD  LE+ R   + + 
Sbjct: 361 HLMKKPINEVELPNH--------EVLQACRRKKFQDKITKQLEHHD--LEMYRSLLEDLF 410

Query: 668 TQDPDLTSVRGQSIRIL 684
           T D D   +    + +L
Sbjct: 411 TADQDQEDIAAAMLMLL 427


>gi|258624900|ref|ZP_05719828.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|258582898|gb|EEW07719.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
          Length = 451

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 128/344 (37%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G +       A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPRVRANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A +++ T  
Sbjct: 77  LILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQ---RMCKG-ADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     +I++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAIKFDQLEILVLDEADRMLDMGFIRDIRK-------ILKLLPEKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                  +   K     P++  + P N     +E+        KK   +   ++E     
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|253990397|ref|YP_003041753.1| ATP-dependent RNA helicase RhlE [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781847|emb|CAQ85010.1| putative atp-dependent rna helicase rhle [Photorhabdus asymbiotica]
          Length = 444

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 128/361 (35%), Gaps = 38/361 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q+ AI  +L           +     G+GKT    + M   +             
Sbjct: 23  APTPIQQQAIPVVLAGKD------LLASAQTGTGKTAGFTLPMLQLLNNSPVQTKGRRPV 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +   L     G   I++ T
Sbjct: 77  RALILTPTRELAAQVGENVRNYSKYLRLRSLVVFGGVSINPQMMKLR----GGVDILVAT 132

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D     ++   ++ ++++DE  R      +           +L    P  + L+ 
Sbjct: 133 PGRLLDLEHQNAVDLSRVEILVLDEADRMLDMGFIHDI------RRVLNKLPPKRQNLLF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I  +  K     P+   +   N   E IE+    + + +K   +   I  +  
Sbjct: 187 SATFSDEIKNLASK-LLHNPVSVEVARRNSASEQIEQFVHFVDKKRKGELLSFLIGSRNW 245

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +    R          + + IHG  S   +   +  FK G  ++L+AT + 
Sbjct: 246 QQVLVFTRTKHGANRLAEQLNKDGVTASAIHGNKSQGARTRALADFKEGRIRVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     ++     +     +H++ GR GR +     + L      K       +L
Sbjct: 306 ARGLDIDQLPYVVNFELPNVSEDYVHRI-GRTGRADATGQALSLVCVDEHKLLKDIERLL 364

Query: 612 K 612
           K
Sbjct: 365 K 365


>gi|311740664|ref|ZP_07714491.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304184|gb|EFQ80260.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 619

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 138/379 (36%), Gaps = 41/379 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  QE  I  +++          +     G+GKT    + + + ++      QA+++A
Sbjct: 77  KPSPIQEETIPILMEGRDV------VGLAQTGTGKTAAFALPVLSQIDTKARHPQALVLA 130

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  + + ++   + V  I G      +   L R     A +I+GT     
Sbjct: 131 PTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRR----GAQVIVGTPGRVI 186

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++   L        +L   DE    G Q+ ++   +           TP  + + L S
Sbjct: 187 DHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILED----------TPDRKQVALFS 236

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               +  +   K     P +  +    R ++ I +  +++    K       +E      
Sbjct: 237 ATMPNAIRRLSKQYLDNPAEVTVKSERRTNDNITQRFLLIPHRAKMDAFTRILEVINYDA 296

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   E           S A I+G ++   +E  +D  K+G   +L+AT V   
Sbjct: 297 IIVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 356

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV   + ++  +  +   + +H++ GR GR       IL   P   +   +   V   
Sbjct: 357 GLDVERITHVVNFDIPNDTESYVHRI-GRTGRAGRSGEAILFVTPRERRMLRSIERVTNA 415

Query: 614 TEDGFLIAEED--LKQRKE 630
             +   +   D   ++RKE
Sbjct: 416 RLEEMDLPSVDEVNEKRKE 434


>gi|118475108|ref|YP_891966.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414334|gb|ABK82754.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 624

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 73/409 (17%), Positives = 146/409 (35%), Gaps = 52/409 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++   I + +      +PT+ Q+ AI  I+Q          +     G+GKT    + +
Sbjct: 6   FDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKD------ILAGARTGTGKTAAFALPI 59

Query: 315 AAAVEAG--------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              + +          + +++ P   LA Q  + IK Y +        + G +    + +
Sbjct: 60  LEKLSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLPFKTLPVFGGVSSYPQIQ 119

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD-----EQHRFGVQQRLKLTQK---- 417
           AL+        I++ T     D      L L  +D     E  R      +   ++    
Sbjct: 120 ALKS----GIDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKM 175

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIER 474
                  LL +AT     + L +    D  +I   E+ +    I   +I ++R  ++   
Sbjct: 176 LPEKRQNLLFSATYPSEVMSLCNSMLKDPLRIQIEEQNSTALNIIQRVILVDRDKKMELL 235

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
            +V   E      +  +         +   ++ +S       S+A +HG  S   +   +
Sbjct: 236 NEVFGVESIDQALVFTRT--------KRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTL 287

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + FKNG  K+L+AT +   G+D+ +   +I     +     +H++ GR GR       I 
Sbjct: 288 EKFKNGKTKILVATDIAARGLDIKELPFVINLELPNVPEDYVHRI-GRTGRAGNDGVAIS 346

Query: 595 LYHPP-----LSKNSYTRLSVLKNTEDGFLIAEEDLK-----QRKEGEI 633
           L         +         +++ +  GF   E DL+      R+   +
Sbjct: 347 LVCVDEFKFLIDIEKLIDKKLIRESFSGF---EADLRVKPQPIRRGQNM 392


>gi|157126121|ref|XP_001654546.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108873390|gb|EAT37615.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 741

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 128/368 (34%), Gaps = 48/368 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------G 321
            P+  Q  A   +L+          I     G+GKTL  L+     +E           G
Sbjct: 345 KPSPIQAQAWPVLLKGED------LIGIAQTGTGKTLAFLLPAFIHIEGQPVPRGEARGG 398

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              ++MAP   LA Q  + + KY       + +  G   +    K       G   III 
Sbjct: 399 PNVLVMAPTRELALQIEKEVFKYQFRDIKAICLYGGGDRRTQINKV-----KGGVEIIIA 453

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D +            L+L   D     G + ++           LL+   P  +
Sbjct: 454 TPGRLNDLVAANVIDITSITYLVLDEADRMLDMGFEPQI---------RKLLLDIRPDRQ 504

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-----RIDEVIERLKVVLSEGKKAYWI 488
           T++ ++     + ++ +      P++  +  ++      + + IE +       +   ++
Sbjct: 505 TIMTSATWPPGVRRLAQSYM-SNPVQVYVGTLDLAATHTVTQQIEVIDEEDKYMRVMNFV 563

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
                  K   F     R + L   F  S      +HG     D+E  ++  K+G  ++L
Sbjct: 564 TNMGPSDKVIIFCGRKTRADDLSSEFVLSGINCTSLHGDREQADREQALEDIKSGDVRVL 623

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           IAT V   G+D+ D S ++  +        +H++ GR GR       +  +       + 
Sbjct: 624 IATDVASRGLDIEDISHVVNYDFPRNIEEYVHRV-GRTGRAGRSGVSLSFFTRGDWAVAS 682

Query: 606 TRLSVLKN 613
             + +L+ 
Sbjct: 683 DLIKILEE 690


>gi|25027815|ref|NP_737869.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
           YS-314]
 gi|259506205|ref|ZP_05749107.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
 gi|23493098|dbj|BAC18069.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
           YS-314]
 gi|259166182|gb|EEW50736.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
          Length = 736

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 130/343 (37%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q   I  ++           +     G+GKT    + + + ++      QA+++A
Sbjct: 127 TPSPIQAQTIPVLMDGHDV------VGLAQTGTGKTAAFALPVLSRIDKSVRSPQALVLA 180

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  + +  +   + V  I G      +   L R     AHI++GT     
Sbjct: 181 PTRELALQVADSFQSFADHLGGLNVLPIYGGQAYGIQLSGLRR----GAHIVVGTPGRII 236

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRTL 435
           D ++           L+L   DE    G Q+ +   L        V L +AT     R L
Sbjct: 237 DHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILADTPDDKQVALFSATMPNGIRRL 296

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L +     +  +      I    + +   +++    +++     +A  +  + + +
Sbjct: 297 SKQYLNNPQEISVKSETRTATNITQRFLSVAHRNKMDALTRILEVTEFEAMIMFVRTKHE 356

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E       E    L     S+ AI +G ++   +E  +D  K+G   +L+AT V   G+
Sbjct: 357 TE-------EVAEKLRARGFSAAAI-NGDIAQAQRERTVDQLKDGRLDILVATDVAARGL 408

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV   S ++  +  +   + +H++ GR GR       IL   P
Sbjct: 409 DVERISHVLNYDIPNDTESYVHRI-GRTGRAGRTGEAILFVTP 450


>gi|319651055|ref|ZP_08005189.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317397225|gb|EFV77929.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 481

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 142/370 (38%), Gaps = 35/370 (9%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  ++ L  + +  PT+ Q   I   +++         +++   GSGKT    I ++  
Sbjct: 12  SEEIKRALAVLKYETPTEVQSEVIPLAMKNQD------LVVKAQTGSGKTASFGIPVSDM 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           VE      QA+I+ P   LA Q  E I    +  +I    + G  P + ++  L++    
Sbjct: 66  VEWEEKKPQAIILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFSKQKDELKQ---- 121

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVL 424
           + H+++GT     D I+   LIL  +        DE    G    +   + +  +    +
Sbjct: 122 KTHVVVGTPGRVMDHIERETLILDQIKYLIIDEADEMLNRGFIDEVEAIIKELPSNRVTM 181

Query: 425 LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           + +AT       L    + D    KI         I+  +I +   +++     V + E 
Sbjct: 182 VFSATLPKDVENLCHKYMKDPIQIKIESTKVTADTIEHSLIEVREEEKISLLKDVTVVEN 241

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I  + +E         V+   S  +        +HG +   D+ SVM+ FK G  
Sbjct: 242 PDSCLIFCRTKE--------HVDTVYSELDKAGYPCERLHGGLEQEDRFSVMEGFKLGNF 293

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           + L+AT V   GID+ + +++I  +      + +H+  GR GR       I    P   K
Sbjct: 294 RYLVATDVAARGIDIDNVTLVINYDVPMEKESYVHR-TGRTGRAGNKGKAITFSTPFEGK 352

Query: 603 NSYTRLSVLK 612
                   + 
Sbjct: 353 FIKAIERYIC 362


>gi|307706894|ref|ZP_07643696.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
 gi|307617767|gb|EFN96932.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
          Length = 524

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 134/363 (36%), Gaps = 34/363 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +   L L  +        DE    G        +++   +   LL +AT     + + + 
Sbjct: 135 KRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  KI  K    + +    I +   ++     +++  E  +   +  +       
Sbjct: 195 FMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+ 
Sbjct: 249 --KRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    I    P          ++ K    G 
Sbjct: 307 GVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVSPNEMGYLQIIENLTKKRMKGL 365

Query: 619 LIA 621
             A
Sbjct: 366 KPA 368


>gi|104783928|ref|YP_610426.1| ATP-dependent RNA helicase DbpA [Pseudomonas entomophila L48]
 gi|95112915|emb|CAK17643.1| ATP-dependent RNA helicase [Pseudomonas entomophila L48]
          Length = 461

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 86/461 (18%), Positives = 174/461 (37%), Gaps = 62/461 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + + S T  Q  ++  IL+          I Q   GSGKT    I +   +     G
Sbjct: 21  LDALGYASMTPIQAQSLPVILKGQD------LIAQAKTGSGKTAAFGIGLLNPINPRYFG 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    I +  + G +    +  +LE      AHII+
Sbjct: 75  CQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH----GAHIIV 130

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-T 434
           GT    Q  +    L+L      ++DE  R                   ++  TP  R T
Sbjct: 131 GTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIAS-------IIGKTPSRRQT 183

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I ++ +    +   + V +     D  IE+  + +   ++   +   +  
Sbjct: 184 LLFSATYPAGIEQLAKDFMRQP--QQVKVEALHSDSQIEQRFIEIDPQQRLEAVTRVLGH 241

Query: 495 KKESNFRSVV---ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +  +  +     ++   L  H T+       +HG +   D++ V+  F N +  +L+AT
Sbjct: 242 YRPQSCVAFCFTKQQCEDLVTHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+    ++I           +H++ GR GR  E    I L  P     +    
Sbjct: 302 DVAARGLDIDGLDLVINVELARDAEIHVHRV-GRTGRAGEKGVAISLVAPAEGHRAQAIE 360

Query: 609 SV--------------------LKNTEDGFLIAEEDLKQRKEGEILG--IKQSGMPKFLI 646
            +                    L  T     I      + + G+ILG     +G+P   +
Sbjct: 361 DLQNKPLRWEQLDNLKSKGGEPLLPTMTTLCIGAGRKDKLRPGDILGALTGDAGLPGKQV 420

Query: 647 AQPELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            +  + D  + + + R  AK  + +  +   ++G+++++ +
Sbjct: 421 GKIAIFDFVAFVAVERAVAKQAMQRL-NSGKIKGRALKVRI 460


>gi|304415003|ref|ZP_07395797.1| ATP-dependent RNA helicase specific for 23S rRNA [Candidatus
           Regiella insecticola LSR1]
 gi|304283089|gb|EFL91508.1| ATP-dependent RNA helicase specific for 23S rRNA [Candidatus
           Regiella insecticola LSR1]
          Length = 464

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 81/426 (19%), Positives = 163/426 (38%), Gaps = 53/426 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + +S  T  Q + +  IL+    +       Q   GSGKT    I +   +      
Sbjct: 20  LNALGYSSMTPIQAATLPAILKGKDVR------AQAKTGSGKTAAFGIGLLDKIAVEQFV 73

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+ P   LA Q  + +++  + TQ I +  + G      +  +L        H ++
Sbjct: 74  TQALILCPTRELADQISKELRRLARFTQNIKILTLCGGQSIGCQLYSLVHA----PHFVV 129

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++ + L+L  + +        R+       A   ++  A    +TL+ ++ 
Sbjct: 130 GTPGRIQEHLRKHTLVLTNL-KVLVLDEADRMLDMGFNDAIDNIIDYAPKTRQTLLFSAT 188

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I +I+ +    +P+  V+ P    +  IE+L    +  K+   +   ++  +    
Sbjct: 189 YPDSIEQISNR-IQHQPLSVVVSPQKN-ETAIEQLFYESTNEKRLPLLIKILKHYQPDSC 246

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +R     +    S+  +HG +   +++ V   F N +C++L+AT V   G
Sbjct: 247 LVFCNTKLDCQRLYQALKSCQMSVLALHGDLDQHERDQVWVRFANHSCRILVATDVAARG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK-- 612
           +D+   ++++           +H++ GR GR       + L  P     +      L+  
Sbjct: 307 LDIKQLALVVNFEVAFDPEVYIHRI-GRTGRAGIGGCAVTLCTPQEMHRALAIEDYLQTK 365

Query: 613 ---------NTEDGF----LIAEEDL----------KQRKEGEILG--IKQSGMPKFLIA 647
                    N  DG      +A E +          K R  G+ILG    ++G+    I 
Sbjct: 366 LTWLSPEKINDTDGINNSEKLAAEMMTLSIDGGRKAKIR-PGDILGALTGEAGLAAVDIG 424

Query: 648 QPELHD 653
           + +   
Sbjct: 425 KIDTFA 430


>gi|71281612|ref|YP_268332.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71147352|gb|AAZ27825.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 455

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 126/377 (33%), Gaps = 56/377 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------------- 319
            T  Q+ AI  I Q       +  +     G+GKT    + +  A+              
Sbjct: 24  LTPIQQEAIPVIRQG------VDLLASAQTGTGKTAAFSLPILDAIAKANHAAKSSTTST 77

Query: 320 ---------AGGQA---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
                    A GQA   +I+ P   LA Q  + IK+++Q   I   ++ G    A + K 
Sbjct: 78  DENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVVYGGGKMASQTKM 137

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQK 417
           L++       +++ T     + +            L+L   D     G        L   
Sbjct: 138 LKQ----GLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLAV 193

Query: 418 ATAPHVLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                 L+ +AT   R   L    L       ++++      IK  +  +    +     
Sbjct: 194 KHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEERKRELLS 253

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +++     +   +    +E                 +      A+ HG  +   +   ++
Sbjct: 254 ELIGVNNWQQVLVFAGTKESA--------NTLAKELKLDGIKAALCHGDKTQGARNKALE 305

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F  G  ++L+AT V   G+D+ D + ++  +        +H++ GR GR  +  + I L
Sbjct: 306 QFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRV-GRTGRAGKSGTAISL 364

Query: 596 YHPPLSKNSYTRLSVLK 612
             P   +       +++
Sbjct: 365 VSPKDERFLENIEQLIE 381


>gi|22126413|ref|NP_669836.1| ATP-dependent RNA helicase DbpA [Yersinia pestis KIM 10]
 gi|45441434|ref|NP_992973.1| ATP-dependent RNA helicase DbpA [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108807144|ref|YP_651060.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Antiqua]
 gi|108812508|ref|YP_648275.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Nepal516]
 gi|145598635|ref|YP_001162711.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Pestoides F]
 gi|149366275|ref|ZP_01888310.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162421745|ref|YP_001606136.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Angola]
 gi|165928002|ref|ZP_02223834.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938672|ref|ZP_02227227.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010820|ref|ZP_02231718.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210580|ref|ZP_02236615.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167402150|ref|ZP_02307625.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420322|ref|ZP_02312075.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425805|ref|ZP_02317558.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467438|ref|ZP_02332142.1| ATP-independent RNA helicase DbpA [Yersinia pestis FV-1]
 gi|218928898|ref|YP_002346773.1| ATP-dependent RNA helicase DbpA [Yersinia pestis CO92]
 gi|229896216|ref|ZP_04511386.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229897150|ref|ZP_04512306.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229897877|ref|ZP_04513028.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902891|ref|ZP_04518008.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|270486675|ref|ZP_06203749.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294504053|ref|YP_003568115.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|21959402|gb|AAM86087.1|AE013856_1 ATP-dependent RNA helicase [Yersinia pestis KIM 10]
 gi|45436295|gb|AAS61850.1| ATP-dependent RNA helicase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108776156|gb|ABG18675.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|108779057|gb|ABG13115.1| ATP-dependent RNA helicase [Yersinia pestis Antiqua]
 gi|115347509|emb|CAL20417.1| ATP-dependent RNA helicase [Yersinia pestis CO92]
 gi|145210331|gb|ABP39738.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides F]
 gi|149292688|gb|EDM42762.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162354560|gb|ABX88508.1| ATP-independent RNA helicase DbpA [Yersinia pestis Angola]
 gi|165913286|gb|EDR31908.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920059|gb|EDR37360.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990164|gb|EDR42465.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207760|gb|EDR52240.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962017|gb|EDR58038.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048425|gb|EDR59833.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055204|gb|EDR65001.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680338|gb|EEO76437.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229688918|gb|EEO80983.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693487|gb|EEO83536.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701139|gb|EEO89168.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262361760|gb|ACY58481.1| ATP-dependent RNA helicase [Yersinia pestis D106004]
 gi|262366103|gb|ACY62660.1| ATP-dependent RNA helicase [Yersinia pestis D182038]
 gi|270335179|gb|EFA45956.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294354512|gb|ADE64853.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|320015493|gb|ADV99064.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 460

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 87/456 (19%), Positives = 178/456 (39%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + ++  T  Q + +  IL     +       +   GSGKT    I +   +  G   
Sbjct: 19  LNELGYTEMTPVQAAVLPAILNGQDVR------AKAKTGSGKTAAFGIGLLDKIAVGEFV 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  + TQ I +  + G  P  H+  +L        HI++
Sbjct: 73  TQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHA----PHIVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L+L  + +        R+     + A   ++    P  +TL+ ++ 
Sbjct: 129 GTPGRIQEHLRKKTLVLDEL-KTLVLDEADRMLDMGFSDAIDDVIAYTPPQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I +I+ +   R+P+   +   +  +  IE++    +  K+   +   +   +    
Sbjct: 188 YPSGIEQISAR-VQRQPLNVEVGDTDE-EPAIEQVFFETTREKRLPLLISVLSHYQPASC 245

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +      E    S+  +HG +   D++ V+  F N +C++L+AT V   G
Sbjct: 246 VVFCNTKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL--- 611
           +D+ D  ++I           +H++ GR GR       + L  P     ++T    L   
Sbjct: 306 LDIKDLELVINFELAFDPEIHIHRI-GRTGRAGMSGLAVSLCTPQEMVRAHTIEDYLQIK 364

Query: 612 ----------KNTEDGFLIAEEDL--------KQRKEGEILG--IKQSGMPKFLIAQPEL 651
                     ++T          L        K R  G+ILG     +G+    + + ++
Sbjct: 365 LKWTPAEQVSRSTNIMLEPEMVTLCIDGGRKAKIR-PGDILGALTGDAGLTAADVGKIDM 423

Query: 652 H--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
               + + I +  AK  L Q      ++G++ +  L
Sbjct: 424 FPVHAYVAIRKASAKRALQQL-QQGKIKGKNCKARL 458


>gi|311693479|gb|ADP96352.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 507

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 129/343 (37%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +P+  Q  AI  +L           +     G+GKT    + + + ++A     Q +++A
Sbjct: 26  TPSPIQAQAIPALLAG------NHLLGVAQTGTGKTAAFALPLLSRIDASVTDPQILVLA 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E    Y    +    + I G      + K L R     A +I+GT     
Sbjct: 80  PTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFYPQIKGLRR----GAQVIVGTPGRML 135

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--L 435
           D ++           L+L   DE  R G    +   L +        L +AT  P+   +
Sbjct: 136 DHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPENCQRALFSATMPPQIKKV 195

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L +    +I  +    + I   ++P+    ++    +++  E   A  I  +    
Sbjct: 196 AQTYLRNATEVRIESETRTVERISQFVLPVYAERKLDALTRILEVEPIDAAIIFVRT--- 252

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++              ++A + G ++   +E  ++  K G   ++IAT V   G+
Sbjct: 253 -----KAETTMLAEKLSARGHAVAPLSGDLNQRQREQTVEDLKRGKKDIIIATDVAARGL 307

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV   + +I  +  +   A +H++ GR GR       ILL  P
Sbjct: 308 DVSRITHVINYDVPYDTEAYIHRV-GRTGRAGREGKAILLVTP 349


>gi|304434516|dbj|BAJ15435.1| VASA-like gene [Mytilus galloprovincialis]
          Length = 745

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/365 (19%), Positives = 133/365 (36%), Gaps = 38/365 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q+ +I  +   MS ++ M        GSGKT   L+ +   +   G          
Sbjct: 321 PTPVQKYSIPIV---MSGRDLM---ACAQTGSGKTAAFLLPVLTGMMNNGLTGSSFSVVQ 374

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             QA+++AP   LA Q +   K++T  T +   ++ G     H+ + +E+     AHI++
Sbjct: 375 EPQALVVAPTRELAVQIFTDAKRFTHGTMLRPVVLYGGTSLGHQLRNVEQ----GAHIVV 430

Query: 381 GTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D      +   KL  +I+DE  R          +     H L        +TL
Sbjct: 431 GTPGRLIDVIGKGKVSLEKLKYLILDEADRMLDMGFGP--EIKKIVHELGAPPKEQRQTL 488

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I ++  +        T +  +      + +    +   +K   +C  + E 
Sbjct: 489 MFSATFPEEIQRLAAEFLNDYLFLT-VGRVGGACTDVAQYVHEVPRDQKRQKLCDILSES 547

Query: 496 KES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +   +   +           IHG     ++E  +  FK G   +L+AT+
Sbjct: 548 GTDKTLVFVEQKRNADFLATYLSQSGFPTTSIHGDRLQQEREEALRDFKTGRAPILVATS 607

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTRL 608
           V   G+D+     +I  +        +H++ GR GR   +      Y        +   L
Sbjct: 608 VAARGLDIPLVKHVINYDLPQSIDEYVHRI-GRTGRCGNVGKSTSFYTDDSDGGIAKALL 666

Query: 609 SVLKN 613
            +L +
Sbjct: 667 RILAD 671


>gi|304387310|ref|ZP_07369503.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091]
 gi|304338693|gb|EFM04810.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091]
          Length = 462

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 126/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPSALEGRD------IMASAQTGSGKTAAFLLPTLQKLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET-------IVEATPSDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    +  ++   ++ E+L        K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|323497181|ref|ZP_08102201.1| ATP-dependent RNA helicase DbpA [Vibrio sinaloensis DSM 21326]
 gi|323317756|gb|EGA70747.1| ATP-dependent RNA helicase DbpA [Vibrio sinaloensis DSM 21326]
          Length = 458

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 79/422 (18%), Positives = 148/422 (35%), Gaps = 60/422 (14%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ +S  T  Q+ A+  +L           I QG  GSGKT    + + + +       
Sbjct: 19  ASLGYSEMTPIQQQALPLVLAGKDV------IGQGKTGSGKTATFSLGVLSNLNVKRFRV 72

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q++++ P   LA Q  + I+   +    I V  + G MP   +  +LE      AHI++G
Sbjct: 73  QSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH----GAHILVG 128

Query: 382 THALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D +        +   L+L   D     G +  +           ++  A    +
Sbjct: 129 TPGRILDHLSKGRINLDELNTLVLDEADRMLDMGFEDAI---------DAIISAAPTQRQ 179

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +L+ ++    +I  + EK    +P    +   +    + +R   +    +K   +   + 
Sbjct: 180 SLLFSATFPANIKTLAEK-VMSEPEMVKVESTHETTTIEQRFYALEGSEEKDNALETLLL 238

Query: 494 EKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             K        N +  V+       H   S+  +HG M   ++E  +  F N +  +L+A
Sbjct: 239 VHKPESSVVFCNTKKEVQNVTDELNHRGFSVVELHGDMEQREREQALTMFANKSVSILVA 298

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV +   +            +H++ GR GR          Y           
Sbjct: 299 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRI-GRTGRAGSKGIAFSFYSEKEHYRVERI 357

Query: 608 LSVL-----------KNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLIA 647
              +           K  E  F    + ++           G+ILG   KQ+G+    I 
Sbjct: 358 EDYMALDFNASPLPEKPVERPFYPKMQTIQILGGKKQKVRAGDILGALTKQAGIDGKKIG 417

Query: 648 QP 649
           + 
Sbjct: 418 KI 419


>gi|315499118|ref|YP_004087922.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB
           48]
 gi|315417130|gb|ADU13771.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
           48]
          Length = 605

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/356 (19%), Positives = 130/356 (36%), Gaps = 27/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L     K+ +L I Q   G+GKT    + +   + +          +
Sbjct: 24  TPTPIQAQAIPILL----NKHDLLGIAQ--TGTGKTAAFALPILHHILSNRIIPAPRSCR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++++P   LA Q  +  K Y++   + +  I G +    + KAL+    G   I++ T 
Sbjct: 78  VLVLSPTRELATQIADSFKAYSKGLGLQIATIFGGVKYGPQYKALQ----GGIDILVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D I+   + L  V+        Q L +        V   +  P  R  +  S    
Sbjct: 134 GRLIDHIEQKTIDLKAVEHLVLDEADQMLDMGFIKPIRQV--ASRLPAQRQNLFFSATMP 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------E 497
                        P K  I P     E + +  + + + +K   +     ++K       
Sbjct: 192 KEIAGLANELLTNPKKVEITPEATTAERVTQQVIFIEQQRKRALLSELYADEKLARTLIF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   +R  +  +      A IHG  +   +E  + +FK G  + L+AT +   GIDV
Sbjct: 252 TRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVRALVATDIAARGIDV 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            + + +I         A +H++ GR  R  +    I L      K       + + 
Sbjct: 312 DNVTHVINYELPFVAEAYVHRI-GRTARAGKEGHSITLVADDERKLLKDIERITRQ 366


>gi|217976993|ref|YP_002361140.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
 gi|217502369|gb|ACK49778.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
          Length = 448

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 134/346 (38%), Gaps = 28/346 (8%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-- 323
             + ++ PT  Q  AI  +L        ++ I Q   G+GKT    + +   + A  Q  
Sbjct: 18  SKLGYTKPTPIQAQAIPHVLTG----RDLVGIAQ--TGTGKTAAFALPILHQLAANPQQP 71

Query: 324 ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                  ++++P   LA Q  E  +      Q+ V ++ G +P   + +AL+R       
Sbjct: 72  PRGGARVLVLSPTRELASQIAESFRSLGSEMQLSVAVVFGGVPHGAQIRALQR----GLD 127

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           +++ T     D +    +  +   E        ++       A H ++ T     + L  
Sbjct: 128 VLVATPGRLVDHLD-SGVAHLGKTEFFVLDEVDQMLDLGFVKAIHRIVKTLPQRRQNLFF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I+K+      + P +  + P+ +  + +E+  + +   +K   +   + + K 
Sbjct: 187 SATMPTEIAKLAAD-LLKNPAQVSVTPVAKTADRVEQQVLFVETHRKRDILVDLLADAKM 245

Query: 498 ------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                 +  +   ++     E    S A IHG  S   +E  + SF+ G  + L+AT + 
Sbjct: 246 ARTIIFTRTKRGADKVAQHLEVCGVSAAAIHGNKSQSQRERSLASFRAGRVRALVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             GIDV   + ++  +      A +H++ GR  R       I L  
Sbjct: 306 ARGIDVDGVTHVVNFDLPEVPEAYVHRI-GRTARAGAEGVAISLCD 350


>gi|294657345|ref|XP_459659.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
 gi|91207781|sp|Q6BQ61|RRP3_DEBHA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|199432622|emb|CAG87892.2| DEHA2E08052p [Debaryomyces hansenii]
          Length = 477

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/341 (20%), Positives = 130/341 (38%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT  Q  AI   L+          I     GSGKT    I +  A+   +A    +++A
Sbjct: 87  KPTPIQSEAIPHALEGKD------IIGLAQTGSGKTAAFAIPILQALWEAQAAYYGLVLA 140

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E       +  +    I G M    + + L R    + HI++ T     D
Sbjct: 141 PTRELAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMR----KPHILVATPGRIMD 196

Query: 389 SIQY------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            +++        L  +++DE  R      L +        +L +   P  RT  L S   
Sbjct: 197 HLEHTKGFSLKNLKYLVMDEADRL-----LDMDFGPALDKILKII--PTQRTTYLFSATM 249

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE------KK 496
            +     ++ +   P++  +    +  + + +  +++S+G K  ++   + E        
Sbjct: 250 TNKIAKLQRASLHNPVRVAVSNKYQTADNLVQSMMLVSDGYKNTYLIHLLNEFLGKSIII 309

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +   +  +R   L      S   +HG+++   +   ++ FK G   +LIAT V   G+D
Sbjct: 310 FTRTCAHSQRTALLARILGFSAVPLHGQLTQAQRLGSLNKFKAGKANILIATDVAARGLD 369

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +    I+I  +      A +H++ GR  R  +    I L  
Sbjct: 370 IPSVDIVINYDIPTDSKAYIHRV-GRTARAGKSGKSISLIT 409


>gi|23397305|gb|AAN31934.1| putative RNA helicase, DRH1 [Arabidopsis thaliana]
          Length = 423

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 75/361 (20%), Positives = 142/361 (39%), Gaps = 40/361 (11%)

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQN 347
             +     GSGKTL  LI     ++        G   ++++P   LA Q  E   K+ ++
Sbjct: 2   DIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRS 61

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVI 399
           ++I    + G  P+  + + LER     A I++ T     D ++  +        L+L  
Sbjct: 62  SRISCTCLYGGAPKGPQLRDLER----GADIVVATPGRLNDILEMRRISLRQISYLVLDE 117

Query: 400 VDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTL------VLTSLGDIDISKITEK 451
            D     G   Q R  + +  T    L+ TAT  P+ +      +L +   ++I  + E 
Sbjct: 118 ADRMLDMGFEPQIRKIVKEIPTKRQTLMYTAT-WPKGVRKIAADLLVNPAQVNIGNVDEL 176

Query: 452 PAGRK-PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSL 510
            A +       ++        +E++      G K    C        S  R   +   +L
Sbjct: 177 VANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFC--------STKRMCDQLTRNL 228

Query: 511 HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH 570
              F +  A IHG  S  ++++V++ F++G   +L+AT V   G+DV D   ++  +  +
Sbjct: 229 TRQFGA--AAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPN 286

Query: 571 FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
                +H++ GR GR          +    SK++   + +L+           ++  R  
Sbjct: 287 GVEDYVHRI-GRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMATRGG 345

Query: 631 G 631
           G
Sbjct: 346 G 346


>gi|77464394|ref|YP_353898.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1]
 gi|77388812|gb|ABA79997.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1]
          Length = 461

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/364 (19%), Positives = 133/364 (36%), Gaps = 43/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q  AI  ++Q       ++ + Q   G+GKTL   + +   +            +
Sbjct: 32  QPTPIQVEAIPYVMQG----RDLMGLAQ--TGTGKTLAFGLPLLHRLLGVGHPPPPRTIR 85

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   L  Q    ++ +T+ T + V  ITG      + + L R     A I++ T 
Sbjct: 86  ALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQTERLAR----GADIMVATP 141

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +            L+L   D+    G    L+   +               +TL
Sbjct: 142 GRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLK---------RQTL 192

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I ++      R+P+K  + P  +  E I +      +G KA  +   +++ 
Sbjct: 193 LFSATMPKLIEELAHTYL-REPVKVQVAPPGKPVEKIAQGVHFTPQGDKAKLLESYLQKH 251

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +   E+   L   +      IHG  S   ++  +  F++G+  +L+AT 
Sbjct: 252 PGEQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDVLVATD 311

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+     +   +  +     +H++ GR  R     S +    P   +       
Sbjct: 312 VAARGIDIPGVRHVYNYDMPNVPENYVHRI-GRTARAGAEGSAVAFVAPAEMEEFRAVEK 370

Query: 610 VLKN 613
           +LK 
Sbjct: 371 LLKQ 374


>gi|24584399|ref|NP_723899.1| vasa [Drosophila melanogaster]
 gi|12644110|sp|P09052|VASA1_DROME RecName: Full=ATP-dependent RNA helicase vasa, isoform A; AltName:
           Full=Antigen Mab46F11
 gi|7298204|gb|AAF53438.1| vasa [Drosophila melanogaster]
          Length = 661

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 134/365 (36%), Gaps = 43/365 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QA 324
           PT  Q+ +I  I            +     GSGKT   L+ + + +            Q 
Sbjct: 268 PTPIQKCSIPVISSGRD------LMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQV 321

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI++P   LA Q +   +K+   + + + I+ G     H+ + + R      H++I T  
Sbjct: 322 VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR----GCHVVIATPG 377

Query: 385 LFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQ----KATAPHVLLMTATPIP 432
              D +            ++L   D     G  + ++              L+ +AT   
Sbjct: 378 RLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPE 437

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + +    L +     I         +K  I  +N+  +  + ++++    ++A     
Sbjct: 438 EIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEIL---SEQADGTIV 494

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +E K+ ++F        S           IHG      +E  +  FKNG+ K+LIAT+V
Sbjct: 495 FVETKRGADF------LASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV 548

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN-SYTRLS 609
              G+D+ +   +I  +        +H++ GR GR          + P   +  +   + 
Sbjct: 549 ASRGLDIKNIKHVINYDMPSKIDDYVHRI-GRTGRVGNNGRATSFFDPEKDRAIAADLVK 607

Query: 610 VLKNT 614
           +L+ +
Sbjct: 608 ILEGS 612


>gi|302847755|ref|XP_002955411.1| DEAD-box RNA helicase, ATP-dependent [Volvox carteri f.
           nagariensis]
 gi|300259253|gb|EFJ43482.1| DEAD-box RNA helicase, ATP-dependent [Volvox carteri f.
           nagariensis]
          Length = 535

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 133/363 (36%), Gaps = 39/363 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           I   + GSGKTL  L+     + A        G  
Sbjct: 135 EPTPIQCQGWPMALLGRD------LIGLAETGSGKTLAYLLPAVVHINAQPYLQPGDGPI 188

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +  +++  +++I   ++ G  P+  + + L         I+I T 
Sbjct: 189 VLVLAPTRELAVQIQQECQRFGSSSRIKNTVVYGGAPKGPQARDLRS----GVEIVIATP 244

Query: 384 ALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D +        ++  +++DE  R          +K            P  +TL+ +
Sbjct: 245 GRLIDMMDSRVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIR------PDRQTLLWS 298

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +    ++  I            +  P  + +  I ++  ++    K   +   ++ + + 
Sbjct: 299 ATWPKEVQAIARDFLKNPYQVIIGSPELKANHNIRQIVEMVEGYAKYPRLRKLLDTEMDG 358

Query: 498 -------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     R   E    L      ++ + HG  S  +++ V+  FKNGT  +++AT V
Sbjct: 359 RRILIFCETKRGCDELVRQLRTDGYPALGL-HGDKSQQERDWVLQEFKNGTHPIMLATDV 417

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D  +++  +        +H++ GR GR     +    +    ++ +   + V
Sbjct: 418 AARGLDVKDIKVVVNYDMPKTAEDYVHRI-GRTGRAGAHGTAYSFFTGADARLARQVVEV 476

Query: 611 LKN 613
           ++ 
Sbjct: 477 MQE 479


>gi|269104706|ref|ZP_06157402.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161346|gb|EEZ39843.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 647

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 159/416 (38%), Gaps = 33/416 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +PT  Q ++I  +L           + +   G+GKT    + +   +   +   QA++MA
Sbjct: 28  APTPIQAASIPLLLTG------TDALGKAQTGTGKTAAFSLPLLNKLKLSQHKPQAIVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   QN   + V  I G      + +AL       AHI++GT    +
Sbjct: 82  PTRELAIQVAAEVKTLGQNIQGLKVLEIYGGASIVDQMRAL----KNGAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLTSLGDIDI 445
           D I   +L    +DE H F + +    L          +M   P   + ++ ++     +
Sbjct: 138 DLITRDRL---HLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLFSATMPPIV 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            +I ++   R P +  +   NR    +++   V+   +K   +   +E +          
Sbjct: 195 KEIVDRFL-RNPARIDVAGENRTVAKVDQQFWVVKGVEKDEAMMRLLETEDTDASIVFVR 253

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER            A +HG +    +E  ++  K G   +L+AT V+  G+DV  
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVEHIKRGVIDILVATDVVARGLDVPR 313

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR       ILL      +   T   V K+  +   
Sbjct: 314 ITHVFNYDIPFDVESYIHRI-GRTGRAGREGKAILLVRTNQIRMLRTIERVTKSRMEEIQ 372

Query: 620 IAEED-----LKQRKEGEILG-IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           +   D        R   E+    +QS +  F+    +L +S+   A   A  +L +
Sbjct: 373 LPLRDAVAEARLNRLAKELEAQKEQSSVEAFVELVEKLQESIEVDAATLAAMLLQR 428


>gi|260072689|gb|ACX30586.1| hypothetical protein SUP05_FGYC65E210031 [uncultured SUP05 cluster
           bacterium]
          Length = 440

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 80/416 (19%), Positives = 152/416 (36%), Gaps = 57/416 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           S T  Q+ ++  IL           I QG  GSGKT    + +   ++      Q++++ 
Sbjct: 5   SMTPIQQLSLPAILSGKDV------IGQGKTGSGKTAAFGLGLLQKLDVKSFKAQSIVLC 58

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    I+K  +    I V  + G  P   +  +LE       HI++GT    +
Sbjct: 59  PTRELADQVATEIRKLARAIHNIKVLTLCGGAPFGPQIGSLEH----GVHIVVGTPGRIE 114

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPRTLVL 437
           + ++   L L  +        D     G Q      + +  +    LL +AT  P  +  
Sbjct: 115 EHLRKGTLKLGSITTLVLDEADRMLDMGFQDTIDEIIEKIPSKRQTLLFSAT-FPNEIAS 173

Query: 438 TSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            +   +    + E P+  +   IK      N  D+ +  L+++L++ K    +       
Sbjct: 174 IAERVMQNPTMVEAPSTHEESTIKQYFYKANSADDRMTALRLLLAKHKPESVLI------ 227

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +      +  + L  +   ++AI HG +   +++  +  F N +  +L+AT V   G+
Sbjct: 228 FCNTKIDTQDVADELVYYGFYALAI-HGDLDQRERDQALIRFSNKSVSVLVATDVAARGL 286

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK--NSYTRLSVLKN 613
           D+    +++  N  H     +H++ GR GR         LY    +   ++         
Sbjct: 287 DIDALDMVVNFNIAHDPEVHVHRI-GRTGRAGRSGIACTLYGDRETHKLDALELDIDFDR 345

Query: 614 TEDGF-----------LIAEEDLKQ-------RKEGEILG--IKQSGMPKFLIAQP 649
             D                   LK         + G+I+G    + G+P   I + 
Sbjct: 346 YTDPLPSDSYLDKLIKKPLMTTLKIDGGKKQKLRPGDIVGGLTGKGGIPGDKIGKI 401


>gi|260428461|ref|ZP_05782440.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
 gi|260422953|gb|EEX16204.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
          Length = 430

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 64/355 (18%), Positives = 128/355 (36%), Gaps = 27/355 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q  AI   L+          +     G+GKTL   + +  A+ A          +
Sbjct: 24  EPTPIQNQAIPLALEGHDV------LGLAQTGTGKTLAFGLPLIDALLAQPGKPLPKTVK 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   L  Q  E +++ T+ T++ V  + G      +   L R       I++ T 
Sbjct: 78  ALVLAPTRELVNQIAESLRQLTEGTKLRVGTVVGGQSINRQINFLSR----GTDILVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    + L    +       Q L L        +     TP  +T++ ++    
Sbjct: 134 GRLIDLMDRKSVDLSQTRQLVLDEADQMLDLGFIHALRKIAPKLGTP-RQTMLFSATMPK 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------ 497
            + +++       P +  + P  +  + I +    L +  K   +   + +  +      
Sbjct: 193 QMEELSAAYLT-NPRRVQVSPPGKAADKITQSVHFLGKDDKPRKLREVLRQDLDALTLVF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S  +   ER          + A IHG  S   ++  + +F++G   +L+AT V   GID+
Sbjct: 252 SRTKHGAERLMKGLVADGFNAASIHGNKSQGQRDRAIKAFRDGDINVLVATDVAARGIDI 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              + ++  +        +H++ GR  R       I    P  +        ++K
Sbjct: 312 PGVAYVVNYDLPEVPDNYVHRI-GRTARAGREGEAIAFCAPDEADLLRQIQRLMK 365


>gi|224477065|ref|YP_002634671.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421672|emb|CAL28486.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 507

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 69/360 (19%), Positives = 128/360 (35%), Gaps = 38/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQAVIMAP 329
            PT  Q  +I   L  +        + Q   G+GKT    I +   V  + G QA+I+AP
Sbjct: 24  EPTPIQTDSIPYALHGLD------ILGQAQTGTGKTGAFGIPLIEKVVDKEGVQALILAP 77

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E ++ +++  ++ V  + G MP   + KAL++       I++GT     D 
Sbjct: 78  TRELAMQVAEQLRAFSRGQRVQVATVFGGMPIGRQIKALKK----GPQIVVGTPGRVIDH 133

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRLKLTQKA---TAPHVLLMTATPIP--RTLV 436
           +    L    +        DE    G    ++             +L +AT     +TLV
Sbjct: 134 LNRRTLKTDDIKTLIIDEADEMMNMGFIDDMRFIMDHLPSEDRQTMLFSATMPKAIQTLV 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              +    I K          I      +  +++       +     +   +  +     
Sbjct: 194 QQFMKSPKIVKTMNNEMSDPQIDEYYTIVKELEKFETFTNFLDVHQPELAIVFGRT---- 249

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+   S           +HG ++   +  V+  FKN    +L+AT V   G+D
Sbjct: 250 ----KRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   S +   +      +  H++ GR GR  +    +   +P         +  ++ T D
Sbjct: 306 ISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKKGIAVTFVNP----IEMDYIRQIEQTND 360


>gi|156720285|dbj|BAF76795.1| vasa-related protein [Enchytraeus japonensis]
          Length = 516

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 71/356 (19%), Positives = 136/356 (38%), Gaps = 47/356 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+ AI  IL       +   +     GSGKT   L+ + + +   G         
Sbjct: 99  KPTPIQKWAIPIILA------KRDLMACAQTGSGKTAAFLLPVLSTMLRNGIEGSSYSEV 152

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              QA+I+ P   L  Q +   +K++ NT +   ++ G +  +++ + +E+     AH+I
Sbjct: 153 QEPQAIIVGPTRELVSQIFNEARKFSYNTIVRPVVVYGGVQTSYQLREIEK----GAHMI 208

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK------ATAPHVLL 425
           +GT     D I   K        LIL   D     G +  +K                L+
Sbjct: 209 VGTPGRLLDFIGRGKISLKKVKFLILDEADRMLDLGFKDDIKKLMNELGMPPKQERQTLM 268

Query: 426 MTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L    L D     +         I+ ++  + + D+   +  + L    
Sbjct: 269 FSATFPEEVQSLARELLNDYLFVTVGRVGGANTDIEQMVYNVGQFDK--RQKLIDLLNAC 326

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +   +E+K+ ++F        S           IHG     ++E  ++ FK+G   
Sbjct: 327 PNERVLVFVEQKRNADF------LASFLSQSELPTTSIHGDREQREREIALNDFKSGRKP 380

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +L+AT+V   G+D+     ++  +        +H++ GR GR   +      ++P 
Sbjct: 381 ILVATSVAARGLDIPGVMHVVNYDMPKEIDEYVHRI-GRTGRCGNMGKATTFFNPE 435


>gi|126175951|ref|YP_001052100.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|152999102|ref|YP_001364783.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|217971789|ref|YP_002356540.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|125999156|gb|ABN63231.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|151363720|gb|ABS06720.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|217496924|gb|ACK45117.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 640

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 93/426 (21%), Positives = 150/426 (35%), Gaps = 56/426 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L  + +  PT  Q ++I  ++           + Q   G+GKT    + +   V  +   
Sbjct: 21  LDELGYEKPTPIQSASIDPLMAGKD------ILGQAQTGTGKTGAFALPLLNKVTSQTTP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E    Y +  +    + I G      +  AL+R       +I+G
Sbjct: 75  QILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKR----GPQVIVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D ++   L        +L   DE  + G    ++   +           TP  R
Sbjct: 131 TPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEH----------TPSER 180

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L L S    +  K       R P+   I       E IE+  V +S+  K   +   +E
Sbjct: 181 QLALFSATMPEQIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLE 240

Query: 494 EKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +             S VE    L     +S + +HG M+   +E  +D  K G   +LI
Sbjct: 241 VENTEGVIIFVRTRNSCVELAEKLEARGYAS-SPLHGDMNQQARERAVDQLKRGKLDILI 299

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV     ++  +  +   A +H++ GR GR       IL       +   T
Sbjct: 300 ATDVAARGLDVERIGHVVNYDIPYDAEAYVHRI-GRTGRAGRTGMAILFVTSREMRMLRT 358

Query: 607 RLSVLKNTEDGFLI------AEEDLKQRKEGEILGIKQSGMPKFLIA-------QPELHD 653
                 +      I      AE  L   + GE L    +G   F+         Q E+  
Sbjct: 359 IERSTNSRISPMKIPSPETVAERRLS--RLGEQLAETINGDLDFMKEAVAQLCQQLEVDT 416

Query: 654 SLLEIA 659
            LL  A
Sbjct: 417 DLLAAA 422


>gi|329895875|ref|ZP_08271203.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088]
 gi|328922093|gb|EGG29452.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088]
          Length = 515

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 136/352 (38%), Gaps = 36/352 (10%)

Query: 261 IAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
             QK L ++ +  P+  Q   I  +L+          I Q   G+GKT    + + A ++
Sbjct: 18  YLQKALDDVGYEVPSDIQTKTIPPLLEG------CDVIGQAQTGTGKTAAFALPILAKID 71

Query: 320 AGG---QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQ 375
                 Q +++AP   LA Q  E  + Y ++     V  I G      + K LER     
Sbjct: 72  CRKKQTQCLVLAPTRELAIQVAEAFQSYARHLPGFQVAPIYGGTDYRTQLKQLER----G 127

Query: 376 AHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLT--QKATAPHVLL 425
           A +I+GT     D ++           L+L   DE  R G    ++    Q      + L
Sbjct: 128 AQVIVGTPGRVMDHMRKGSLKLDNLAHLVLDEADEMLRMGFIDDVEWVMSQLPEKRQIAL 187

Query: 426 MTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     R +    L D     +T+K      I+  +  I+   ++    +++  E  
Sbjct: 188 FSATMPTAIRRIASDYLQDPQHITVTQKTVTATSIRQRVWMISGASKLDGLTRILEVEDF 247

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               I  + +        +  E  + L     ++ A+ +G M+   +E V+   K G   
Sbjct: 248 DGLIIFARTK-------IATTELADKLQARGFAAAAL-NGDMAQSAREQVISQLKKGRLD 299

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +++AT V   G+DV   + ++  +      A +H++ GR GR       IL 
Sbjct: 300 IVVATDVAARGLDVDRITHVVNYDIPQDPEAYVHRI-GRTGRAGRKGEAILF 350


>gi|307169387|gb|EFN62107.1| Eukaryotic initiation factor 4A-III [Camponotus floridanus]
          Length = 402

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 135/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ +IK I++          I Q   G+GKT    IA+  +++      Q ++++
Sbjct: 51  KPSAIQQRSIKPIMKGRDV------IAQAQSGTGKTATFSIAILQSLDTQVRETQVLVLS 104

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        +      G        + L+       H++ GT     D
Sbjct: 105 PTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQ----HVVSGTPGRVFD 160

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+           L+L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 161 MIKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMT 220

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    D  +I  K      + IK   + + R +   + L  +       +A   C     
Sbjct: 221 SKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT--- 277

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+           ++  +HG M   +++++M  F++G  ++LI T V   G
Sbjct: 278 ------KRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGQSRVLITTDVWARG 331

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV   S++I  +  +     +H++ GR GR       I        +            
Sbjct: 332 IDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVSINFVKTDDIRILRDIEQYYSTQ 390

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 391 IDEMPMNVADL 401


>gi|256830240|ref|YP_003158968.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579416|gb|ACU90552.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 530

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 128/337 (37%), Gaps = 21/337 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  Q   I  +L           + Q   G+GKT    + +   ++      QA+++A
Sbjct: 24  EPTPIQIKTIPAVLTG-----DSDIVAQAQTGTGKTAAFGLPLLEMLDPDVRTVQALVLA 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E +        I V  I G      + ++L++       +++GT     D
Sbjct: 79  PTRELAIQVAEEVNSLRGGRTINVAPIYGGQSMEIQLRSLKK----GVSVVVGTPGRVLD 134

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++   L L  +         + L +        ++  TAT   RT++ ++    +I +I
Sbjct: 135 HLRRGSLNLSGIRFLILDEADEMLNMGFLDDVLEIMEQTAT-EKRTMLFSATMPPEILRI 193

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN------FRS 502
            +K  G   I   +       +  +++   ++   K   +C  I+ + +         + 
Sbjct: 194 AKKYMGDYQIIKAVSEQLTATQT-DQIYFEVAMSDKFEALCRIIDMEPDFYGLVFTRTKI 252

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             +  +            +HG MS   +E ++  FK     +L+AT V   GIDV D + 
Sbjct: 253 DADAVSQRLMERGYEADTLHGDMSQSLREKMLIKFKKKLVTILVATDVAARGIDVHDLTH 312

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +I  +  H   A +H++ GR GR  +    I    P 
Sbjct: 313 VINFDLPHDPEAYVHRI-GRTGRAGKQGIAITFITPS 348


>gi|163839675|ref|YP_001624080.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953151|gb|ABY22666.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 652

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 68/391 (17%), Positives = 136/391 (34%), Gaps = 43/391 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             ++G++   +       P+  Q + I  +L+          +     G+GKT    +  
Sbjct: 49  FGLDGRVLAALKDVGYEKPSPIQAATIPVLLEGRDV------VGLAQTGTGKTAAFALPA 102

Query: 315 AAAVEA-----GGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKAL 368
            + +         Q +++AP   LA Q  E    Y  +     V  + G      +   L
Sbjct: 103 LSRMANLPATKDTQILVLAPTRELALQVAEAFSSYAAHMDNFSVLPVYGGSAYGPQLAGL 162

Query: 369 ERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRL--KLTQKA 418
            R     A +++GT     D +            L+L   DE  R G    +   L +  
Sbjct: 163 RR----GAQVVVGTPGRVIDHLSKGSLDLSNLQYLVLDEADEMLRMGFADDVEQILAETP 218

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-----IIPINRIDEVIE 473
               V L +AT   +   +      + ++I+ K        T      ++  +++D +  
Sbjct: 219 EDKQVALFSATMPGQIRRIAKKYLNNPAEISVKAKTTTGENTRQRYLQVMGPHKLDAMTR 278

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L+V   +G  A+              +   E      +      A I+G +    +E  
Sbjct: 279 ILEVEDYDGVIAFV-----------RTKMATEELADKLKSRGYRAAAINGDIPQQQRERT 327

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +++ ++G+  +L+AT V   G+DV   S+++  +  H   + +H++ GR GR       I
Sbjct: 328 VEALRSGSIDVLVATDVAARGLDVERISLVVNYDIPHDTESYVHRI-GRTGRAGRSGDAI 386

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
           L   P             +   +   +   D
Sbjct: 387 LFMTPREKYLLRAIEKATRQPVEQMHLPSAD 417


>gi|119470813|ref|ZP_01613424.1| ATP-dependent RNA helicase, cold shock protein A [Alteromonadales
           bacterium TW-7]
 gi|119446040|gb|EAW27319.1| ATP-dependent RNA helicase, cold shock protein A [Alteromonadales
           bacterium TW-7]
          Length = 600

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 148/378 (39%), Gaps = 46/378 (12%)

Query: 267 RNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---G 322
             + + +P++ Q   I  +L+      R   +     G+GKT    + +   ++      
Sbjct: 21  EELGYKTPSEIQAQCIPLLLE------RKDVLGLAQTGTGKTAAFALPLLNNIDPSVKQP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++ P   LA Q  E  ++Y + T  + V  + G    + +  AL R     A II+ 
Sbjct: 75  QILVLTPTRELAIQVAEAFEQYAKGTRGVEVLALYGGQSYSIQLSALRR----GAQIIVA 130

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPI 431
           T     D I            L+L   DE  R G    ++   + T       L +AT  
Sbjct: 131 TPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPREKQTCLFSATMP 190

Query: 432 PRTLVLT--SLGDIDISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYW 487
            +   ++   + + +   I+ + +    ++ V     +++   ++  L+    EG   + 
Sbjct: 191 KQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNASVHKNKAIVRFLEAEQYEGAIVFV 250

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        R+   +   L E    S A ++G M+   +E  +D  K+G   ++IA
Sbjct: 251 -----------RTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVIA 299

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV   S++I  +      A +H++ GR GR       IL          Y  
Sbjct: 300 TDVAARGLDVDRLSLVINYDIPQDSEAYVHRI-GRTGRAGRTGKAILFVKH---NERYLL 355

Query: 608 LSVLKNTEDGFLIAEEDL 625
            +++++T+    IA+ +L
Sbjct: 356 KNIIRHTKS--EIAQVEL 371


>gi|54308937|ref|YP_129957.1| ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46913367|emb|CAG20155.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Photobacterium
           profundum SS9]
          Length = 422

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 75/376 (19%), Positives = 143/376 (38%), Gaps = 51/376 (13%)

Query: 269 IPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---- 323
           + F +PT  QE AI  +L           +     G+GKT    + M   + A  Q    
Sbjct: 19  LGFKTPTPIQEQAIPQVLAG------DDIMAGAQTGTGKTAAFGLPMIQRLLASQQSEHD 72

Query: 324 -----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                      A+++ P   LAQQ ++ I  Y++NT I V +  G      + KAL+   
Sbjct: 73  EGYIKKPEAIRALVLTPTRELAQQVHDSILAYSKNTSIKVAVAYGGTSMGVQVKALKS-- 130

Query: 373 HGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHRFG-----VQQRLKLTQKATAPH 422
                I+I T     D      +   K+  +++DE  R       V  +  + +      
Sbjct: 131 --GVDILIATPGRLLDHAFTGTVDLSKIECLVLDEADRMLDMGFVVDIKRIMQRMPRKRQ 188

Query: 423 VLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            LL +AT   +   L    L D  + ++T +    + +  ++ P+++  +      ++ S
Sbjct: 189 TLLFSATFSNQVKKLAYDILADPKLIEVTPENITAESVTQMVYPVDKHRKRELLSYLIGS 248

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
                  I  + ++  +       E    L      +++I +G  S   ++  +  FK G
Sbjct: 249 RNWNQVLIFTKTKQGSD-------ELAKELILDGIKAVSI-NGDKSQGARQRALSDFKEG 300

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             + ++AT V   G+D+     ++  +        +H++ GR GR     S I L    +
Sbjct: 301 KVRAMVATDVAARGLDIEQLGYVVNFDLPFQAEDYVHRI-GRTGRAGLTGSAISL----M 355

Query: 601 SKNSYTRLSVLKNTED 616
           S +    L  ++   D
Sbjct: 356 SIDEEWALRAIEELLD 371


>gi|323691087|ref|ZP_08105368.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           symbiosum WAL-14673]
 gi|323504856|gb|EGB20637.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           symbiosum WAL-14673]
          Length = 552

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/339 (21%), Positives = 126/339 (37%), Gaps = 35/339 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  Q  +I   L+ +        I Q   G+GKT    I +   V+      QA+I+ P 
Sbjct: 28  SPIQGQSIPLELEGLD------IIGQAQTGTGKTAAFGIPLLQKVDPKSKKLQAIILCPT 81

Query: 331 GILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  E I++  +    + V  I G      + ++L+        +IIGT     D 
Sbjct: 82  RELAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGRQIRSLKD----GIQVIIGTPGRVMDH 137

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--LVL 437
           ++   L L  V        DE    G  + +   L++       ++ +AT  P    +  
Sbjct: 138 MRRKTLKLEHVHTVVLDEADEMLNMGFLEDMETILSELPEERQTVMFSATMPPAIAEIAK 197

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
               D +I K+ +K      +      +    +V    +++     K   +         
Sbjct: 198 KFQKDPEIVKVVKKELTVPKVTQYYYEVKPKTKVEVMCRLLDMYDPKLSIVF-------C 250

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  R V +    L      +  + HG +  + ++ VM+SF+NG   +LIAT V   GIDV
Sbjct: 251 NTKRQVDDLVQELQGRGYFAEGL-HGDLKQMQRDRVMNSFRNGRTDILIATDVAARGIDV 309

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            D   +   +        +H++ GR GR         L 
Sbjct: 310 DDVEAVFNYDIPQDDEYYVHRI-GRTGRAGREGKAFSLV 347


>gi|323483414|ref|ZP_08088802.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
           WAL-14163]
 gi|323403268|gb|EGA95578.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
           WAL-14163]
          Length = 552

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/339 (21%), Positives = 126/339 (37%), Gaps = 35/339 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  Q  +I   L+ +        I Q   G+GKT    I +   V+      QA+I+ P 
Sbjct: 28  SPIQGQSIPLELEGLD------IIGQAQTGTGKTAAFGIPLLQKVDPKSKKLQAIILCPT 81

Query: 331 GILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  E I++  +    + V  I G      + ++L+        +IIGT     D 
Sbjct: 82  RELAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGRQIRSLKD----GIQVIIGTPGRVMDH 137

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--LVL 437
           ++   L L  V        DE    G  + +   L++       ++ +AT  P    +  
Sbjct: 138 MRRKTLKLEHVHTVVLDEADEMLNMGFLEDMETILSELPEERQTVMFSATMPPAIAEIAK 197

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
               D +I K+ +K      +      +    +V    +++     K   +         
Sbjct: 198 KFQKDPEIVKVVKKELTVPKVTQYYYEVKPKTKVEVMCRLLDMYDPKLSIVF-------C 250

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  R V +    L      +  + HG +  + ++ VM+SF+NG   +LIAT V   GIDV
Sbjct: 251 NTKRQVDDLVQELQGRGYFAEGL-HGDLKQMQRDRVMNSFRNGRTDILIATDVAARGIDV 309

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            D   +   +        +H++ GR GR         L 
Sbjct: 310 DDVEAVFNYDIPQDDEYYVHRI-GRTGRAGREGKAFSLV 347


>gi|319957469|ref|YP_004168732.1| dead/deah box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
 gi|319419873|gb|ADV46983.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
          Length = 477

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 76/357 (21%), Positives = 137/357 (38%), Gaps = 33/357 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N + ++AQ I       P+  Q+ AI  IL+          I Q   G+GKT    + +
Sbjct: 6   FNFKPQLAQAIKEAGFREPSPVQKEAIPLILEGRD------LIAQAHTGTGKTAAFGLPV 59

Query: 315 AAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
              +   G  +A+++ P   LA Q  + I ++ +   I    + G      + + ++   
Sbjct: 60  LQQLSCDGSVEALVIVPTRELATQVSDEIFRFGKALSIRTATVYGGSSYTRQIQHVQ--- 116

Query: 373 HGQAHIIIGTHALFQDSIQYYK-------LILVIVDEQHRFGV--QQRLKLTQKATAPHV 423
              A +++ T     D +Q  K       +IL   DE    G     +   T    +   
Sbjct: 117 --SASVVVATPGRLIDLLQSGKISLSPRFVILDEADEMLDMGFLDDIKEIFTHLPESRQT 174

Query: 424 LLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           LL +AT     RTL    L D     IT      + I+ +   ++  +     ++++  +
Sbjct: 175 LLFSATMSKEIRTLAQRILKDPATVSITGGNVTNEKIRQLFYVVDEPERDDALVRLLDYK 234

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 I  +         +  V+R              +HG M    +E+ + +FKNG 
Sbjct: 235 NPDKSIIFCR--------MKKEVDRLRDFLAAQGYDAKGLHGDMDQRQREATIRAFKNGQ 286

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            ++LIAT V   G+DV D S +   +      + +H++ GR GR     + I +  P
Sbjct: 287 AEILIATDVAARGLDVNDVSHVFNYHLPFDPESYVHRI-GRTGRAGREGTAISIVSP 342


>gi|222110266|ref|YP_002552530.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221729710|gb|ACM32530.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 484

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/363 (18%), Positives = 125/363 (34%), Gaps = 42/363 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-----------G 322
           T  Q  AI  +L           +     G+GKT    + +   +               
Sbjct: 27  TPIQAQAIPVVLTGKDV------MGAAQTGTGKTAAFSLPLLQRLLKHENSSASPARHPV 80

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LA Q  + I  Y + T++   ++ G M    +   L++       +++ T
Sbjct: 81  RALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTIELKK----GVEVLVAT 136

Query: 383 HALFQDSIQYYKLILVIV-----DEQHRFG-----VQQRLKLTQKATAPHVLLMTAT--P 430
                D I+    +L  V     DE  R          +  L+        LL +AT  P
Sbjct: 137 PGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSATFSP 196

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + L  + L D    ++         ++     ++  D+      V+   G K  +I  
Sbjct: 197 EIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDGDDKRRAIRHVLNERGLKQAFIFV 256

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   N +    R     E      A +HG  S  ++   +D+FK+G   LL+ T V
Sbjct: 257 --------NSKLGCARLARSLERDGLKTAALHGDKSQDERLKALDAFKSGEVDLLVCTDV 308

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D   +   +        +H++ GR GR       + L     ++       +
Sbjct: 309 AARGLDIKDVPAVFNYDVPFNAEDYVHRI-GRTGRAGASGLAVTLAASSDTRLVADIEKL 367

Query: 611 LKN 613
           +K 
Sbjct: 368 IKK 370


>gi|325521922|gb|EGD00628.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. TJI49]
          Length = 464

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 80/460 (17%), Positives = 167/460 (36%), Gaps = 60/460 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +++   L           I Q   GSGKT    +A+ + ++A    
Sbjct: 22  LAQLGYVDMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLSRLDARRFD 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    + V  + G  P   + ++LE      AHI++
Sbjct: 76  VQAMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH----GAHIVV 131

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 132 GTPGRIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVAR------LCPPTRQTL 185

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   +   
Sbjct: 186 LFSATYPDGIAKLSQQFLRNP--KEVKLEERHDDSKIRQRFYEVTETERLHAVGMLLNHY 243

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 244 RPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 304 VAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQEGWALSLASMDEMGRVGAIEQ 362

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILG--IKQSGMPKFLIA 647
             K   +   +A              E L+           G++LG     +G     I 
Sbjct: 363 AQKRDVEWHPLAELKPASDQTLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIG 422

Query: 648 QP--ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +       + + + R  A+  L +  +   ++G+ +++ L
Sbjct: 423 KINVTEFSTYVAVERGIAQDALRKL-NAGKIKGKRVKVRL 461


>gi|301162651|emb|CBW22198.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
          Length = 427

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 125/344 (36%), Gaps = 34/344 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQAVI 326
           SPT  QE +I  +LQ          +     G+GKT    I +   +       G +A++
Sbjct: 23  SPTPIQEQSIPILLQGKD------LLGCAQTGTGKTAAFSIPILQKLYKTDHRKGIKALV 76

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E  + Y + T +   +I G + Q  +  AL         I++ T    
Sbjct: 77  LTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRS----GIQILVATPGRL 132

Query: 387 QDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            D I         L   ++DE  R      +   +       +L       +TL  ++  
Sbjct: 133 LDLISQGFISLSSLDFFVLDEADRMLDMGFIHDIK------RILKLLPARRQTLFFSATM 186

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
             +I  +       KP K  + P +   ++I +    + + +K   +   +++       
Sbjct: 187 PPEIETLANS-MLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLLKDTSIESVL 245

Query: 497 -ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  +   ++   +          IHG  +   ++  + +FKN T + LIAT +   GI
Sbjct: 246 IFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIATDIAARGI 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV   S +I     +     +H++ GR GR       I      
Sbjct: 306 DVDQLSHVINYELPNVPETYVHRI-GRTGRAGHEGVAISFCESE 348


>gi|251773001|gb|EES53557.1| putative ATP-dependent helicase [Leptospirillum ferrodiazotrophum]
          Length = 472

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 75/361 (20%), Positives = 124/361 (34%), Gaps = 40/361 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           SPT  Q+  I  I++          +     GSGKT   L+      +         Q +
Sbjct: 23  SPTPIQKQTIPPIIEGRDV------LGVAQTGSGKTGGFLLPSLHRNKRAQGNRTRHQIL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +++P   LA Q     ++Y +  +    ++ G      +   L R       ++I T   
Sbjct: 77  VLSPTRELAGQIERSAREYGKYLRSRTVLLVGGTDMRRQIDFLRRPW----DLVIATPGR 132

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLK-----LTQKATAPHVLLMTATPIPRTL 435
             D +Q   + L  V     DE  R      L      L         LL TAT   R  
Sbjct: 133 LIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHPERQTLLFTATLPARIQ 192

Query: 436 VLTSLGDID--ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +LT     D  + ++    A    I   ++ I+   +    LK +L+E        PQ  
Sbjct: 193 MLTKTYQKDPVLIRLETASAPPVSIDQEVVAISHGAQKWGLLKTILTE--------PQTT 244

Query: 494 EKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           E +   F         L     +       +HG  S   +  V+  F+ G  ++L+AT V
Sbjct: 245 EGQTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRILVATDV 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+   + +I  +        +H++ GR GR       I   HP           +
Sbjct: 305 AARGLDIDTVTCVINYDLPQSPEDYVHRI-GRTGRAGRSGRAISFCHPADRNLLRDIERL 363

Query: 611 L 611
           L
Sbjct: 364 L 364


>gi|21673432|ref|NP_661497.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
 gi|21646533|gb|AAM71839.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
          Length = 657

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 74/354 (20%), Positives = 133/354 (37%), Gaps = 44/354 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT  Q S I  +L+          + Q   G+GKT    + + + ++     
Sbjct: 42  LEAVGYENPTPIQASTIPLLLEGRDV------LGQAQTGTGKTAAFALPVLSNIDLSATD 95

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++AP   LA Q  E    Y +      V  I G      + + L+R      H+++
Sbjct: 96  PQALVLAPTRELAIQVAEAFHTYAEFMPGFHVLPIYGGQDYGVQIRNLKR----GVHVVV 151

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++           L+L   DE  R G    ++           ++  TP  
Sbjct: 152 GTPGRVMDHMRKGTLNLDNLKCLVLDEADEMLRMGFIDDVEW----------ILDQTPES 201

Query: 433 RTLVL-TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           R + L ++     I +I  K        T+      ++ + +R  +V   G        +
Sbjct: 202 RQVALFSATMPQPIVRIARKYLKAPAEITIQTKTTTVETIRQRYWMV--GGHHKLDALTR 259

Query: 492 IEEKKESNFRSVVER-------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           I E +  +   +  R            +    + A ++G M    +E  ++  K+GT  +
Sbjct: 260 ILEVEPFDGIIIFVRTKTETVALAEKLQARGYAAAALNGDMVQSARERTIEQLKDGTLNI 319

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +IAT V   G+DV   S +I  +      + +H++ GR GR       IL   P
Sbjct: 320 VIATDVAARGLDVERISHVINYDIPTDTESYVHRI-GRTGRAGRSGEAILFVSP 372


>gi|319653101|ref|ZP_08007203.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
 gi|317395022|gb|EFV75758.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
          Length = 463

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/336 (19%), Positives = 125/336 (37%), Gaps = 23/336 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE AI  +++          I Q   G+GKT   ++ +   ++      QA+I+ 
Sbjct: 24  KPTPIQEQAIPAVMEGRD------IIAQAQTGTGKTFAFILPILEKLDPDAVHIQALIVT 77

Query: 329 PIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q   E  K    +  + V  + G      +   L++    +  I++GT     
Sbjct: 78  PTRELALQITDEVQKLTAGDDDLEVLAVYGGQDVDKQLNKLKK----KVQIVVGTPGRLL 133

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D I+   + L   D        Q L +        ++  T     +T++ ++    +I  
Sbjct: 134 DHIKRKTIDLSQADFLVLDEADQMLHIGFLDEVEDIIKET-PGKRQTMLFSATIPAEIRN 192

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---NFRSVV 504
           +  K         +         V +     +   K+A  +   I+  +      F    
Sbjct: 193 LARKHMKEPEYMQIEKTQGPAQSVKQIAIHTIDRAKQA-TLMQLIQTHRPYLAVIFCRTK 251

Query: 505 ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            R + L++   S+      +HG +S   +E VM  F++   +LL+AT V   G+DV   +
Sbjct: 252 RRVSKLNDVLKSNGFQCDELHGDLSQSKREQVMKRFRDAELQLLVATDVAARGLDVEGVT 311

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            +   +      + +H++ GR GR       I  Y 
Sbjct: 312 HVFNYDIPLDPESYVHRI-GRTGRAGMKGMAITFYS 346


>gi|254805163|ref|YP_003083384.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
 gi|254668705|emb|CBA06474.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
          Length = 462

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 126/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEGRD------IMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFGRLEVLILDEADRMLDMGFIDDIET-------IVEATPTDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    +  ++   ++ E+L        K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|224539911|ref|ZP_03680450.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518465|gb|EEF87570.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 435

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 125/356 (35%), Gaps = 33/356 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE +I  IL+          I     G+GKT   L+ +   +  GG        ++M
Sbjct: 25  TPIQEKSIPVILEGRD------LIAVAQTGTGKTAAYLLPVLNKLSEGGHPEDAINCIVM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ ++    +    + G        +  + +  G A ++I T     
Sbjct: 79  SPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLMLG-ADVVIATPGRLI 137

Query: 388 DS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                  +   ++   I+DE  R           +               +T++ ++   
Sbjct: 138 AHLSLGYVDLSRVSYFILDEADRMLDMGFFDDIMQIVKY------LPKERQTIMFSATMP 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
             I ++            V + ++R  + I +   V  E +K   I     E+       
Sbjct: 192 AKIQQLANTILNNPAE--VKLAVSRPADKIVQAAYVCYENQKLGIIRSLFAEQTPERVII 249

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +    ++  +H  +    +E VM  FK G   +L+AT ++  GID
Sbjct: 250 FASSKLKVKEVTKALKMMKLNVGEMHSDLEQAQREEVMHEFKAGRINILVATDIVARGID 309

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           + D  ++I  +  H     +H++ GR  R       +   +     N     + L+
Sbjct: 310 IDDIRLVINYDVPHDSEDYVHRI-GRTARANNDGVALTFVNEKEQSNFKQIENFLE 364


>gi|153007483|ref|YP_001368698.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559371|gb|ABS12869.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 644

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 145/364 (39%), Gaps = 44/364 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
           + T  Q + +        +      ++    GSGKT+   +AMA  +  G          
Sbjct: 22  TLTAVQNAVLAP------ETLDADLLVSAQTGSGKTVAFGLAMANTILEGELRFSDAGAP 75

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+AP   LA Q    ++    +T   +    G M     R+ALER     AHI++GT
Sbjct: 76  LAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GAHIVVGT 131

Query: 383 HALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
               +D I        +   ++L   DE    G ++ L+           L  A    RT
Sbjct: 132 PGRLRDHITRDALDMSELRAVVLDEADEMLDMGFREDLEFI---------LGEAPKDRRT 182

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I+++ ++        TV    ++  + I+ + + +   ++ + I   +  
Sbjct: 183 LMFSATVPKPIAQLAKRFQNDALRLTVQSETSQHAD-IDYVAMPVPPHERDHAIINTLLY 241

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
               N       R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +AT
Sbjct: 242 YDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+ +  ++I  +  +     LH+  GR GR     +C+L+      + +   L
Sbjct: 302 DVAARGIDLPNLDLVIHADLPNNPETMLHR-SGRTGRAGRKGTCVLVVPFSRRRTAERLL 360

Query: 609 SVLK 612
            + K
Sbjct: 361 HMAK 364


>gi|51712358|ref|XP_485792.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus]
 gi|82902181|ref|XP_918907.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus]
          Length = 411

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 135/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I+M   ++      QA+I+A
Sbjct: 60  KPSAIQQRAIKQIMKGRDV------IAQSQSGTGKTATFSISMLQCLDIQVRETQALILA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 114 PTRELAVQIQKGLLTLGDYMNVQCHACIGGTNVDEDIRKLDYGQ----HVVAGTPGRVFD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 170 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D   I  K      + IK   + + R +   + L          Y      +   
Sbjct: 230 NKFMTDPICILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 282

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T +   G+D
Sbjct: 283 FCNTKRKVDWLTEKMREANFTVSSMHGNMPQKERESIMKEFRSGASRVLISTDIWARGLD 342

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 343 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 401

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 402 EMPMNVADL 410


>gi|148550027|ref|YP_001270129.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida F1]
 gi|148514085|gb|ABQ80945.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 494

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 175/461 (37%), Gaps = 62/461 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + + S T  Q  ++  IL+          I Q   GSGKT    I +   +     G
Sbjct: 54  LEALGYASMTPIQAQSLPVILKGQD------LIAQAKTGSGKTAAFGIGLLNPINPRYFG 107

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    I +  + G +    +  +LE      AHII+
Sbjct: 108 CQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH----GAHIIV 163

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-T 434
           GT    Q  +    L+L      ++DE  R                   ++  TP  R T
Sbjct: 164 GTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIAS-------IIGKTPSRRQT 216

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I ++          + V +     D  IE+  + +   ++   +   +  
Sbjct: 217 LLFSATYPAGIKQLAADFMRNP--QQVKVESLHTDNQIEQRFIEIDPQQRLEAVTRVLGH 274

Query: 495 KKESNFRSVV---ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +  +  +     ++   +  H T+       +HG +   D++ V+  F N +  +L+AT
Sbjct: 275 YRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVAT 334

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+    ++I           +H++ GR GR  E    + L  P     +    
Sbjct: 335 DVAARGLDIDGLDMVINVELARDAEIHVHRV-GRTGRAGEKGVAVSLVAPAEGHRAQAIE 393

Query: 609 SVLK-----------NTEDG---------FLIAEEDLKQRKEGEILG--IKQSGMPKFLI 646
           ++ K             + G           IA     + + G+ILG     +G+P   +
Sbjct: 394 ALQKSPLRWDQLDSLKNKGGEPLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQV 453

Query: 647 AQPELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            +  + D  + + + R  AK  + +  +   ++G+++++ +
Sbjct: 454 GKIAIFDFQAFVAVERALAKQAMQRL-NSGKIKGRALKVRI 493


>gi|116671594|ref|YP_832527.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116611703|gb|ABK04427.1| ATP-dependent RNA helicase CsdA [Arthrobacter sp. FB24]
          Length = 747

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 71/384 (18%), Positives = 137/384 (35%), Gaps = 47/384 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + ++G++   +       P+  Q + I  +L+          +     G+GKT    +  
Sbjct: 95  LGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDV------VGLAQTGTGKTAAFAVPA 148

Query: 315 AAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHR 364
            + +             QA+++AP   LA Q  E    Y ++     V  + G      +
Sbjct: 149 LSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQ 208

Query: 365 RKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRL--KL 414
              L R     A +++GT     D I        +   L+L   DE  R G  + +    
Sbjct: 209 LAGLRR----GAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIF 264

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-----IIPINRID 469
            Q  +   V L +AT   +   ++     + ++I+ K        T      ++  +++D
Sbjct: 265 QQTPSDRQVALFSATMPSQIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVMGPHKLD 324

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            +   L+V   +G  A+              +   E      +      A I+G +    
Sbjct: 325 ALTRILEVEEFDGVIAFV-----------RTKMATEDLADKLKSRGFQAAAINGDIPQQQ 373

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E  +D+ K G   +L+AT V   G+DV   S ++  +  H   + +H++ GR GR    
Sbjct: 374 RERTVDALKEGRIDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRI-GRTGRAGRS 432

Query: 590 SSCILLYHPPLSKNSYTRLSVLKN 613
              IL   P       +     + 
Sbjct: 433 GDAILFMTPREKYLLRSIEKATRQ 456


>gi|320530074|ref|ZP_08031144.1| DEAD/DEAH box helicase [Selenomonas artemidis F0399]
 gi|320137507|gb|EFW29419.1| DEAD/DEAH box helicase [Selenomonas artemidis F0399]
          Length = 423

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 131/350 (37%), Gaps = 22/350 (6%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT  QE A+  +            I Q   G+GKTL  L+ +   ++  G   QA+++AP
Sbjct: 25  PTPVQERAVPAMRAGRDV------IAQAQTGTGKTLAFLLPVLEKIKPQGAVVQALVIAP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q     +       I   ++ G      +++ L R       ++IGT     D 
Sbjct: 79  TRELAIQIARVAEPLAAALSIGTTLVYGGADIERQKEKLRR----HPQLVIGTPGRLLDH 134

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++   L L  V++       + LKL        +L  TA      L L S    +     
Sbjct: 135 VRRGTLALGSVNKVVLDEADEMLKLGFIEDVETLLGHTAQDY--QLALFSATMPERIVQL 192

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVER 506
            K     P +  I   +   E IE++ + ++E +K   +C  I E+       F +  ER
Sbjct: 193 TKRFMHNPARIKIEGEHTTLENIEQIALSVNEEEKLDRLCASINEEAPYLAMVFCATKER 252

Query: 507 FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            ++L          +  + G ++   +  V+  F+    ++L AT +   G+D+   + +
Sbjct: 253 THALMMALAGRGYLVDALSGNLTQTQRAFVLRQFRAAKLQILCATDIAARGLDIEGVTHV 312

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
              +        +H++ GR GR       I L      +      S LK 
Sbjct: 313 YNYDLPPTVTDYIHRI-GRTGRAGARGRAITLVTARQHEKLRKIESALKE 361


>gi|254561714|ref|YP_003068809.1| RNA helicase [Methylobacterium extorquens DM4]
 gi|254268992|emb|CAX24953.1| RNA helicase [Methylobacterium extorquens DM4]
          Length = 510

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 128/342 (37%), Gaps = 27/342 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           +PT  Q  A+   ++                G+GKT    + +   +          G +
Sbjct: 24  TPTPIQAQAVPPAMEGRD------LCGIAQTGTGKTAAFALPILHRLSLDSRRAPRRGCR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++++P   LA Q  +    Y ++      ++ G +    + +A+         I++ T 
Sbjct: 78  VLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIAP----GVDILVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    L L  V+        Q L L        ++ M      ++L  ++    
Sbjct: 134 GRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPA-KRQSLFFSATMPK 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------E 497
           +I+ + ++     P++  + P+    E +++  +    G K   +   + + K       
Sbjct: 193 NIAGLADQYL-SNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVLRDPKIERVLVF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   +R     +      A IHG  S   +E  + +F++G+C++L+AT +   GIDV
Sbjct: 252 TRTKHGADRVVRGLDKANVVSAAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGIDV 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              + ++  +  +   + +H++ GR  R       I   +  
Sbjct: 312 DGVTHVVNYDLPNVPESYVHRI-GRTARAGAEGQAISFCNDE 352


>gi|213964614|ref|ZP_03392814.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
 gi|213952807|gb|EEB64189.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
          Length = 702

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 136/369 (36%), Gaps = 35/369 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q + I  ++           +     G+GKT    + + A ++      QA+++A
Sbjct: 83  TPSPIQAATIPTLMSGRDV------VGLAQTGTGKTAAFALPILARIDRSVRAPQALVLA 136

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  + +  +   I V  I G      +   L R     A II+GT     
Sbjct: 137 PTRELALQVADSFQSFADHLGKIQVLPIYGGQSYGVQLSGLRR----GAQIIVGTPGRVI 192

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRTL 435
           D ++           L+L   DE  + G Q+ +   L        V L +AT     R L
Sbjct: 193 DHLEKGSLDISDLRFLVLDEADEMLQMGFQEDVERILADTPDDKQVALFSATMPASIRRL 252

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L + +   +  +      I+   + ++  +++    +++  E  +A  +  +    
Sbjct: 253 SKQYLTEPEEITVKSQTRTADNIRQRFLMVSHRNKLDALTRILEVEEFEAMIMFVRT--- 309

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E           S A I+G +    +E  +D  K+G   +L+AT V   G+
Sbjct: 310 -----KHETEELAEKLRARGFSAAAINGDIPQTLRERTIDQLKDGRLDILVATDVAARGL 364

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  H   + +H++ GR GR       +L   P   +   +     K+  
Sbjct: 365 DVDRISHVVNYDIPHDTESYVHRI-GRTGRAGRSGEALLFVTPREGRLLRSIERATKSQL 423

Query: 616 DGFLIAEED 624
               +   D
Sbjct: 424 HEMKLPTVD 432


>gi|168025828|ref|XP_001765435.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683285|gb|EDQ69696.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 535

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 84/494 (17%), Positives = 163/494 (32%), Gaps = 61/494 (12%)

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMR---- 244
           + K++  K       E         +A +   T   R    + E    ++     R    
Sbjct: 39  LRKEIRLKVGLEERPEEIAAQKQKEEAANMYDTFDMRVDRHWSEKKLEEMTERDWRIFRE 98

Query: 245 ---------KQFKKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRM 294
                    +  +               K ++ + ++ P+  Q +AI   LQ      + 
Sbjct: 99  DFNISYKGSRIPRPMRNWAEGALSPELLKAVQKVGYTKPSPIQMAAIPIGLQ------QR 152

Query: 295 LRILQGDVGSGKTLVALIAMAAAV-----------EAGGQAVIMAPIGILAQQHYEFIKK 343
             I   + GSGKT   ++ M   +             G  AV+MAP   LAQQ  +   K
Sbjct: 153 DVIGIAETGSGKTAAFVLPMLTYISKLPPMTEEIEAEGPYAVVMAPTRELAQQIEDETVK 212

Query: 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------L 395
           +     I V  I G      +   L +       ++I T     D ++           +
Sbjct: 213 FAHFLDIRVVSIVGGQSIEEQGFKLRQGCE----VVIATPGRLLDCLERRYAVLNQCNYV 268

Query: 396 ILVIVDEQHRFGVQQRLKLTQKATAPHVL--------LMTATPIPRTLVLTSLGDIDISK 447
           +L   D     G + ++     A     L        L T      T + ++     + +
Sbjct: 269 VLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDAELDTHKIYRTTYMFSATMPPAVER 328

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------NFR 501
           +  K   R P+   I    +  ++I +  +++ E +K   +C  + +  +       N +
Sbjct: 329 LARKYL-RNPVVVTIGTAGKATDLITQHVIMVKETEKLDRLCRVLNDMGDKTAIIFVNTK 387

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              +  +   +     +  +HG  +   +E  +D F+N     L+AT V   GID+ D +
Sbjct: 388 KSADTLSRQLDKNGYRVTTLHGGKTQEQREVSLDGFRNKRFNCLVATDVAGRGIDIPDVA 447

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF--L 619
            +I  +         H++ GR GR  +            +   Y    +L  +       
Sbjct: 448 HVINYDMPGNIEMYTHRI-GRTGRAGKTGIATTFLTLHDTDVFYDLKQMLVQSNSPVPPE 506

Query: 620 IAEEDLKQRKEGEI 633
           +A  +  + K G I
Sbjct: 507 LARHEASKFKPGSI 520


>gi|77359936|ref|YP_339511.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874847|emb|CAI86068.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 616

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 140/376 (37%), Gaps = 42/376 (11%)

Query: 267 RNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---G 322
             + + +P++ Q   I  +L+      R   +     G+GKT    + +   ++      
Sbjct: 21  EELGYKTPSEIQAQCIPLLLE------RKDVLGLAQTGTGKTAAFALPLLNNIDPSVKQP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++ P   LA Q  E  ++Y ++   I V  + G    + +  AL R     A +I+ 
Sbjct: 75  QILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSALRR----GAQVIVA 130

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I            L+L   DE  R G    ++   + T             +
Sbjct: 131 TPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPRE---------KQ 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T + ++     I  I+ K         +    + +  V +          KA     + E
Sbjct: 182 TCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNASIHKNKAIVRFLEAE 241

Query: 494 EKK----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           + +        R+   +   L E    S A ++G M+   +E  ++  K+G   ++IAT 
Sbjct: 242 QYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVVIATD 301

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV   S++I  +      A +H++ GR GR       IL          Y   +
Sbjct: 302 VAARGLDVDRLSLVINYDIPQDSEAYVHRI-GRTGRAGRTGKAILFVKH---NERYLLKN 357

Query: 610 VLKNTEDGFLIAEEDL 625
           ++++T     IA+ +L
Sbjct: 358 IIRHTNS--DIAQVEL 371


>gi|255940232|ref|XP_002560885.1| Pc16g05440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585508|emb|CAP93214.1| Pc16g05440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1162

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 135/371 (36%), Gaps = 46/371 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           S T  Q  AI  I+           I     GSGKT   L+ M   ++         G  
Sbjct: 542 SLTSIQAQAIPTIMSGRDV------IGVAKTGSGKTGAFLVPMFRHIKDQRPLASTDGPI 595

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           ++I+AP   LA Q ++  K + +   +      G  P   +   L+R     A II+ T 
Sbjct: 596 SMILAPTRELATQIHKDCKPFLRALGLRAVCAYGGAPIKDQIAELKR----GAEIIVCTA 651

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +           ++  V++DE  R                  ++ +  P  +T+
Sbjct: 652 GRLIDLLAANQGRVLNLRRITYVVLDEGDRM------FDMGFGPQVVKIMASIRPDRQTV 705

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI--- 492
           + ++     +  +  K     P++  +   + +   I ++  V +  +K + +   +   
Sbjct: 706 LFSATFPKSMEALARKTLN-DPVEITVGGKSVVAREITQIVEVRNNDQKFFRLLELLGNL 764

Query: 493 ------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCK 543
                 E+ +   F    E  + L +           IHG    ID++S +  FK G   
Sbjct: 765 YEDDANEDYRTLIFVDRQEAADDLLKQLMYKGYPCMSIHGGKDQIDRDSTIQEFKAGVFP 824

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT+V   G+DV    +++  +A +     +H+  GR GR     + +        + 
Sbjct: 825 ILVATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTFVTEEQDRY 883

Query: 604 SYTRLSVLKNT 614
           +      LK +
Sbjct: 884 ALDIAKALKQS 894


>gi|51595988|ref|YP_070179.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis IP
           32953]
 gi|186895088|ref|YP_001872200.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis PB1/+]
 gi|51589270|emb|CAH20891.1| ATP-dependent RNA helicase [Yersinia pseudotuberculosis IP 32953]
 gi|186698114|gb|ACC88743.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
          Length = 460

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 87/456 (19%), Positives = 178/456 (39%), Gaps = 52/456 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + ++  T  Q + +  IL     +       +   GSGKT    I +   +  G   
Sbjct: 19  LNELGYTEMTPVQAAVLPAILNGQDVR------AKAKTGSGKTAAFGIGLLDKIAVGEFV 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  + TQ I +  + G  P  H+  +L        HI++
Sbjct: 73  TQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHA----PHIVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    Q+ ++   L+L  + +        R+     + A   ++    P  +TL+ ++ 
Sbjct: 129 GTPGRIQEHLRKKTLVLDEL-KTLVLDEADRMLDMGFSDAIDDVIAYTPPQRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I +I+ +   R+P+   +   +  +  IE++    +  K+   +   +   +    
Sbjct: 188 YPSGIEQISAR-VQRQPLNVEVGDTDE-EPAIEQVFFETTREKRLPLLISVLSYYQPASC 245

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +      E    S+  +HG +   D++ V+  F N +C++L+AT V   G
Sbjct: 246 VVFCNTKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL--- 611
           +D+ D  ++I           +H++ GR GR       + L  P     ++T    L   
Sbjct: 306 LDIKDLELVINFELAFDPEIHVHRI-GRTGRAGMSGLAVSLCTPQEMVRAHTIEDYLQIK 364

Query: 612 ----------KNTEDGFLIAEEDL--------KQRKEGEILG--IKQSGMPKFLIAQPEL 651
                     ++T          L        K R  G+ILG     +G+    + + ++
Sbjct: 365 LKWTPAEQVSRSTNIMLEPEMVTLCIDGGRKAKIR-PGDILGALTGDAGLTAADVGKIDM 423

Query: 652 H--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
               + + I +  AK  L Q      ++G++ +  L
Sbjct: 424 FPVHAYVAIRKASAKRALQQL-QQGKIKGKNCKARL 458


>gi|320582894|gb|EFW97111.1| pre-mRNA processing RNA-helicase, putative [Pichia angusta DL-1]
          Length = 752

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 68/399 (17%), Positives = 154/399 (38%), Gaps = 52/399 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ F  PT  Q  A+ +++           I     GSGKTL  L+ +   + A    
Sbjct: 205 LDSLGFEAPTPIQCEALPNVMSGHD------LIGIAKTGSGKTLAFLLPLFRQLLANPAA 258

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A++M P   LA Q +     + +  ++      G    + +   +++       ++
Sbjct: 259 PSVRALVMTPTRELAMQIFNESSVFLEALKLRGCCCYGGQSISQQIAEIKK----GCDLV 314

Query: 380 IGTHALFQDSIQYYK-----------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           +GT     D +               L+L   D     G + ++    K T         
Sbjct: 315 VGTPGRIIDLLCANNGRVLRLSHVTYLVLDEADRMFDMGFEPQVMKILKVTR-------- 366

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  +T++ ++     +  +  +     P++ ++   N +++ I +   +L E +K   +
Sbjct: 367 -PDRQTVLFSATFPPRMEALARRCLT-DPVEVLVGAKNLVNDKIMQQFEILDEEQKFGRL 424

Query: 489 CPQIEEKKESN------FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKN 539
              +   + S+      F    +  +SL             +HG    ID++ ++  FK+
Sbjct: 425 LQVLARFQSSDSGKILIFVDKQDSCDSLANQLIIRGYPTLSLHGGKEQIDRDGIISDFKS 484

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+AT+V   G+DV D ++++  ++ +     +H++ GR GR     + +      
Sbjct: 485 NVIDILVATSVASRGLDVKDLNLVVNYDSPNHMEDYVHRV-GRTGRAGRSGTAVTFVTRH 543

Query: 600 LSKNSYTRLSVLKNTEDGF-----LIAEEDLKQRKEGEI 633
             +++   + +L+ +          IA    ++ K GE+
Sbjct: 544 QERSASDIVRLLELSGTQPPAELAQIASRFREKLKRGEV 582


>gi|296314174|ref|ZP_06864115.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
           ATCC 43768]
 gi|296839180|gb|EFH23118.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
           ATCC 43768]
          Length = 457

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 126/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEGRD------IMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFGRLEVLILDEADRMLDMGFIDDIET-------IVEATPSDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    +  ++   ++ E+L        K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|289167533|ref|YP_003445802.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
           DEAD-box family [Streptococcus mitis B6]
 gi|288907100|emb|CBJ21934.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
           DEAD-box family [Streptococcus mitis B6]
          Length = 521

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 134/363 (36%), Gaps = 34/363 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +   L L  +        DE    G        +++   +   LL +AT     + + + 
Sbjct: 135 KRKALKLQDIGTLILDEADEMLNMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  KI  K    + +    I +   ++     +++  E  +   +  +       
Sbjct: 195 FMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+ 
Sbjct: 249 --KRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    I    P          ++ K    G 
Sbjct: 307 GVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVSPNEMGYLQIIENLTKKRMKGL 365

Query: 619 LIA 621
             A
Sbjct: 366 KPA 368


>gi|255261571|ref|ZP_05340913.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
 gi|255103906|gb|EET46580.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
          Length = 499

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/406 (17%), Positives = 152/406 (37%), Gaps = 61/406 (15%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N++ K+   +       PT  Q  AI   L+          +     G+GKT    + M
Sbjct: 7   LNLDRKVLSAVEDAGYTEPTPIQAGAIPPALEGRDV------LGIAQTGTGKTASFTLPM 60

Query: 315 AAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
            + ++ G       +++++AP   LA Q  E    Y +NT++   ++ G +    + + +
Sbjct: 61  ISMLKRGRARARMPRSLVLAPTRELAAQVAENFDVYAKNTKLTKALLIGGVSFKEQDQLI 120

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQK-----A 418
           +R       ++I T     D  +  KL+L     ++VDE  R      +   ++      
Sbjct: 121 DR----GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFGLTP 176

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISK------------ITEKPAGRKPIKTVIIPIN 466
                L  +AT  P    +T+    + +K            IT+     K  +       
Sbjct: 177 FTRQTLFFSATMAPEIERITNTFLSNPAKVEVARAATTSDTITQSVVMFKGSRKDRESSE 236

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
           +   +   ++    + +     C +         +  V+      + +    + IHG + 
Sbjct: 237 KRQLLRTMIENEGDKCRNGIIFCNR---------KVDVDIVAKSMKKYGLDASPIHGDLD 287

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              +   + +F++GT + L+A+ V   G+D+ + S +   +        +H++ GR GR 
Sbjct: 288 QSKRMETLAAFRDGTLRFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRI-GRTGRA 346

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ-RKEG 631
            ++ + +++  P   KN      ++K            ++  R EG
Sbjct: 347 GKLGTAMMICVPRDEKNLGDIERLVK------------MEIPRGEG 380


>gi|171693513|ref|XP_001911681.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946705|emb|CAP73508.1| unnamed protein product [Podospora anserina S mat+]
          Length = 694

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 133/388 (34%), Gaps = 51/388 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA----------------- 315
           PT  Q+ +I  ++           +     GSGKT   L  +                  
Sbjct: 217 PTPVQKYSIPIVIGGRD------LMACAQTGSGKTGGFLFPILHQSFVQGPSPIPAQGGG 270

Query: 316 ----AAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                  +A   A+I+AP   L  Q Y+  +K+   + +   ++ G      + + +ER 
Sbjct: 271 GGGYRQRKAYPTALILAPTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQIER- 329

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLM 426
                 +++ T     D I+  ++ L  +     DE  R          Q         M
Sbjct: 330 ---GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEP--QIRRIVQGEDM 384

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
             T   +TL+ ++    DI  + +       +   +  +    E I +    + +  K  
Sbjct: 385 PLTGQRQTLMFSATFPRDIQMLAQDFLN-DYVFLSVGRVGSTSENITQKVEYVEDVDKRS 443

Query: 487 WICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +   +              + + +  +    +       IHG  +  ++E  ++ F+NG
Sbjct: 444 VLLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRNG 503

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
            C +L+AT V   G+D+ + + +I  +        +H++ GR GR          ++   
Sbjct: 504 KCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGIATAFFNRGN 562

Query: 601 SKNSYTRLSVLKNTED---GFL--IAEE 623
                  L +LK       GFL  IA E
Sbjct: 563 RGVVRELLELLKEANQEVPGFLETIARE 590


>gi|152995705|ref|YP_001340540.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836629|gb|ABR70605.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 438

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 90/446 (20%), Positives = 165/446 (36%), Gaps = 56/446 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  QE ++  +++          + Q   GSGKTL   IA+   +     G QA++M P 
Sbjct: 7   TPIQEQSLPPMIEGKD------ILAQAQTGSGKTLAFSIALLLKINPRFFGVQALVMCPT 60

Query: 331 GILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + I+K  +    I V  + G MP   +  +LE      AHI++GT     + 
Sbjct: 61  RELADQVSKEIRKVARYQDNIKVLSLCGGMPFGPQIGSLEH----GAHIVVGTPGRLMEH 116

Query: 390 IQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           ++   L L      ++DE  R        L          ++  TP  R  +L S    D
Sbjct: 117 LRKGTLKLNALNTLVLDEADRM-------LDMGFVDSIREIVELTPSNRQTLLFSATYGD 169

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------S 498
             +   K     PI   +     +   IE+  V      K   +   ++  +        
Sbjct: 170 GIEAISKEFQSTPISIKVEAQEDLKPNIEQFFVRSENKDKCETLLATLQHFEPRQAIVFC 229

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           N ++  +           +   IHG +    ++ V+  F N +  +L+AT V   GIDV 
Sbjct: 230 NTKAESQVVADWLSEHKVAAQAIHGDLEQRQRDQVLVRFSNQSSCVLVATDVAARGIDVK 289

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +  +++  +         H++ GR GR       + L             S    T +  
Sbjct: 290 EIDLVVNYDTTRDTDVHTHRI-GRTGRAGAAGIAVNLVTSKDDYKVRDIESRFNITANFI 348

Query: 619 LIAEEDLKQR------------------KEGEILGIKQSGMP--KFLIAQPELHD--SLL 656
            +   D   R                  + G+ILG   +G+   K  + + ++ D  + +
Sbjct: 349 ELEAIDPHYRLIPQKTTISFDAGRKNKLRPGDILGALTAGLGLDKSQVGKIDIFDFHAYV 408

Query: 657 EIARKDAKHILTQDPDLTSVRGQSIR 682
            +  + AK ++ +  +   ++G++IR
Sbjct: 409 SVDNEVAKTVVKEFEN-KKIKGKNIR 433


>gi|315643920|ref|ZP_07897090.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315280295|gb|EFU43584.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 559

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 152/384 (39%), Gaps = 32/384 (8%)

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
                 + ++ +  +K+       PT  Q+ +I  ++           I +   G+GKTL
Sbjct: 1   MPNFQQLGIDEQRVRKLKEQGITVPTPVQQESIPLLIDGKDV------IARARTGTGKTL 54

Query: 309 VALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKK--YTQNTQIIVEIITGNMPQAH 363
             ++ +   ++   A  QA+I+AP   LA Q  E  KK    +   I +  + G      
Sbjct: 55  AFMLPILQQIDPKRAYPQALIIAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEK 114

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           + + LE    G  H+IIGT     D ++   L L  V +       Q L +         
Sbjct: 115 QLRKLE----GGRHLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDDVEA- 169

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVIERLKVVLSEG 482
            L+ A P  R  +L S       K        +P+  VI   + I  E I+++ V  ++ 
Sbjct: 170 -LIHALPYRRQTMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLEQIQQVVVECTDR 228

Query: 483 KKAYWICPQIEEKK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDS 536
            K   +   IE+        F     R + L++   +       +HG +S   +E+VM  
Sbjct: 229 SKQDALRTMIEQYNPFLAIIFCRTKRRASILNDALLAHGYQSDELHGDLSQAKREAVMKR 288

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F++   +LL+AT V   G+DV   + +   +  H   + +H++ GR GR       I   
Sbjct: 289 FRDAKLQLLVATDVAARGLDVEGVTHVFNYDMPHDVESYIHRI-GRTGRAGGNGMAI--- 344

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLI 620
               +  +   L+ L+  E+G  +
Sbjct: 345 ----TFAAGKDLNDLQRIEEGISL 364


>gi|289550302|ref|YP_003471206.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
 gi|315660238|ref|ZP_07913093.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           lugdunensis M23590]
 gi|289179834|gb|ADC87079.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
 gi|315494665|gb|EFU83005.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           lugdunensis M23590]
          Length = 504

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 71/350 (20%), Positives = 135/350 (38%), Gaps = 37/350 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L N+ F  PT  Q+ +I   L+          + Q   G+GKT    I +   V  ++G 
Sbjct: 17  LENMGFKEPTPIQKDSIPYALEGRD------ILGQAQTGTGKTGAFGIPLIEKVVNKSGV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q++I+AP   LA Q  E ++++++   + V  + G MP   + KAL++       I++GT
Sbjct: 71  QSLILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALKK----GPQIVVGT 126

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +          + LIL   DE    G    ++                   +T
Sbjct: 127 PGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQ--------RQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I  + ++   + P     +     D  I+    ++ E +K       ++ 
Sbjct: 179 MLFSATMPKAIQALVQQFM-KTPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +      F     R + L     S       +HG ++   +  V+  FKN    +L+AT
Sbjct: 238 HQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|145234506|ref|XP_001400624.1| ATP-dependent RNA helicase dbp3 [Aspergillus niger CBS 513.88]
 gi|134034068|sp|A2QFL3|DBP3_ASPNC RecName: Full=ATP-dependent RNA helicase dbp3
 gi|134057571|emb|CAK37981.1| unnamed protein product [Aspergillus niger]
          Length = 495

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 90/396 (22%), Positives = 152/396 (38%), Gaps = 51/396 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--------GQ 323
           SPT  Q +    +            I   + GSGKTL   +     ++            
Sbjct: 100 SPTAIQSATWPFLFSGRDV------IGIAETGSGKTLGFGLPCLKNLQDSAKKGKPYKPT 153

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AV+++P   LA Q ++ I K+ +   I V  I G + +  +R+AL+      A I++ T 
Sbjct: 154 AVMISPTRELAMQIHDQISKFAELVDIKVACIFGGVKKEEQREALK-----TAAIVVATP 208

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLT---QKATAPHVLLMTATPIP 432
              +D     S+   K+  +++DE  R    G +Q +K        +    ++ TAT  P
Sbjct: 209 GRLKDLQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPVSKRQTVMFTATWPP 268

Query: 433 --RTLVLTSLGDIDISKITEKPAGR-------KPIKTVIIPINRIDEVIERLKVVLSEGK 483
             R L  T +       I  +P+         K +  V+ P  +   +++ L        
Sbjct: 269 VVRDLAATFMTSPVTVTIGGEPSADPRANTRIKQVVEVVKPHEKEQRLVQLLNKYQKGPS 328

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            +  I      KKE+       R   L  +    +A IHG +   ++   ++SFK G   
Sbjct: 329 SSDKILVFCLYKKEAV------RVERLLWNKGFKVAGIHGDLGQQERFKSLESFKKGVST 382

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+D+    ++I           +H++ GR GR       I L+       
Sbjct: 383 VLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRI-GRTGRAGAEGHAITLFTEVDKAQ 441

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           S   ++VLK          EDL   K G  +  KQ 
Sbjct: 442 SGALINVLKAAN---QDVPEDL--LKFGATVKKKQH 472


>gi|160873699|ref|YP_001553015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|304411613|ref|ZP_07393226.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307306611|ref|ZP_07586353.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|160859221|gb|ABX47755.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|304350140|gb|EFM14545.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306910579|gb|EFN41008.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|315265932|gb|ADT92785.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 640

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 92/418 (22%), Positives = 148/418 (35%), Gaps = 40/418 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L  + +  PT  Q ++I  ++           + Q   G+GKT    + +   V  +   
Sbjct: 21  LDELGYEKPTPIQSASIDPLMAGKD------ILGQAQTGTGKTGAFALPLLNKVTSQTTP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E    Y +  +    + I G      +  AL+R       +I+G
Sbjct: 75  QILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKR----GPQVIVG 130

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D ++   L L  +  Q     +    L          ++  TP  R L L S  
Sbjct: 131 TPGRVMDHMRRGTLKLDSL--QALVLDEADEMLKMGFIDDIEWILEHTPSERQLALFSAT 188

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---- 497
             +  K       R P+   I       E IE+  V +S+  K   +   +E +      
Sbjct: 189 MPEQIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLEVENTEGVI 248

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                  S VE    L     +S + +HG M+   +E  +D  K G   +LIAT V   G
Sbjct: 249 IFVRTRNSCVELAEKLEARGYAS-SPLHGDMNQQARERAVDQLKRGKLDILIATDVAARG 307

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV     ++  +  +   A +H++ GR GR       IL       +   T      + 
Sbjct: 308 LDVERIGHVVNYDIPYDAEAYVHRI-GRTGRAGRTGMAILFVTSREMRMLRTIERSTNSR 366

Query: 615 EDGFLI------AEEDLKQRKEGEILGIKQSGMPKFLIA-------QPELHDSLLEIA 659
                I      AE  L   + GE L    +G   F+         Q E+   LL  A
Sbjct: 367 ISPMKIPSPETVAERRLS--RLGEQLAETINGDLDFMKEAVAQLCQQLEVDTDLLAAA 422


>gi|52082502|ref|YP_081293.1| ATP-dependent RNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52787898|ref|YP_093727.1| DeaD [Bacillus licheniformis ATCC 14580]
 gi|52005713|gb|AAU25655.1| ATP-dependent RNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52350400|gb|AAU43034.1| DeaD [Bacillus licheniformis ATCC 14580]
          Length = 481

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 138/373 (36%), Gaps = 44/373 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L ++ +  PT  Q   I  +L+      +   +++   GSGKT    I +    E     
Sbjct: 19  LDHLGYKEPTAVQSEVIPAVLK------KRDVVVKSRTGSGKTAAFGIPLCELTEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E +    +  +I    + G      ++  L++    + HI++G
Sbjct: 73  PQALVLTPTRELAAQVKEDLTNIGRYKRIKAAAVYGKSSFERQKTELKQ----KCHIVVG 128

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
                 D I+           L++   DE    G   ++   +         +L +AT  
Sbjct: 129 PPGRVLDHIEKGTLPLEKLKYLVIDEADEMLNMGFIDQVGAIIRHLPEERLTMLFSATFP 188

Query: 432 PRTLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L+     D  KI  K  G     I+  +I +N  D     + + + E   +  + 
Sbjct: 189 EDVEHLSLQYMKDPLKIEIKAGGTTTADIEHQLIIVNENDPFSLLVDLFIVENPDSCIVF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E+        V                IHG M   D+ +VM+ F+ G  + LIAT 
Sbjct: 249 CRTQEQ--------VNELQWRLSVLGYPCEKIHGGMPQEDRFAVMNRFRRGAFRYLIATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I         + +H+  GR GR       I L        S     
Sbjct: 301 VAARGIDIENITHVINYELPLDQESYVHR-TGRTGRAGSRGKAITL-------ASAREKR 352

Query: 610 VLKNTED--GFLI 620
           ++ + ED  GF I
Sbjct: 353 MIADIEDYIGFHI 365


>gi|48136057|ref|XP_393356.1| PREDICTED: eukaryotic initiation factor 4A-III-like isoform 1 [Apis
           mellifera]
          Length = 403

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 135/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ +IK I++          I Q   G+GKT    IA+  +++      Q ++++
Sbjct: 52  KPSAIQQRSIKPIMKGRDV------IAQAQSGTGKTATFSIAILQSLDTQVRETQVLVLS 105

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        +      G        + L+       H++ GT     D
Sbjct: 106 PTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQ----HVVSGTPGRVFD 161

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+           L+L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 162 MIKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMT 221

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    D  +I  K      + IK   + + R +   + L  +       +A   C     
Sbjct: 222 SKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT--- 278

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+           ++  +HG M   +++++M  F++G  ++LI T V   G
Sbjct: 279 ------KRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGQSRVLITTDVWARG 332

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV   S++I  +  +     +H++ GR GR       I        +            
Sbjct: 333 IDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVSINFVKTDDIRILRDIEQYYSTQ 391

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 392 IDEMPMNVADL 402


>gi|312138933|ref|YP_004006269.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|311888272|emb|CBH47584.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
          Length = 610

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 77/343 (22%), Positives = 128/343 (37%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q + I  +L+          +     G+GKT    I + + ++      QA+I+A
Sbjct: 37  SPSPIQAATIPTLLEGKDV------VGLAQTGTGKTAAFAIPILSRLDVDRKVPQALILA 90

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   KY+ +   + V  I G      +   L R     A II+GT     
Sbjct: 91  PTRELALQVAEAFGKYSAHIPGLQVLPIYGGQAYGVQLSGLRR----GAQIIVGTPGRVI 146

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTL 435
           D ++   L        +L   DE  + G Q  +   L        V L +AT  P  R +
Sbjct: 147 DHLEKGTLDLSNLEYLVLDEADEMLKMGFQDDVERILADTPEYKQVALFSATMPPAIRKI 206

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D     +  K A    I    + +    ++    +++  E  +A  I  +    
Sbjct: 207 SKQYLHDPVEITVKAKTATASNITQRWVQVAHQRKLDALTRILEVESFEAMIIFVRT--- 263

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E           S A I+G +    +E  +   K+G   +L+AT V   G+
Sbjct: 264 -----KQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDVAARGL 318

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV   S ++  +  H   + +H++ GR GR       +L   P
Sbjct: 319 DVDRISHVVNYDIPHDTESYVHRI-GRTGRAGRTGDALLFVAP 360


>gi|308050752|ref|YP_003914318.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632942|gb|ADN77244.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 426

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 125/360 (34%), Gaps = 39/360 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------AV 325
           T  Q+ AI    +          +     G+GKT    + M  ++    Q         +
Sbjct: 25  TPIQQKAIPLARKGHD------ILANAQTGTGKTAAFALPMLQSMVDKPQQRSRRHVRGL 78

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+AP   LAQQ  + + +Y Q       +  G +  A + + LE        I++ T   
Sbjct: 79  ILAPTRELAQQVADNVAQYHQFLPFTSAVAYGGVKMASQARQLEA----GVDILVATPGR 134

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTAT--PIPR 433
            Q+ ++           L+L   D     G    ++    Q       +L +AT  P  +
Sbjct: 135 LQELMEMNMVSLAQVEYLVLDEADRMLDMGFIGDIQRIRDQIKLPHQTMLFSATYPPKMK 194

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L    L    +  + E+    + +  V  P++   ++    +++  +  +   +     
Sbjct: 195 QLAAELLKKPKMVSVGEENRTAETVAHVFYPVDEDRKIELLSELIGRKNWQQVLVFV--- 251

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N++   +       +   +  + HG  S  ++   +  FK G  ++L+AT V   
Sbjct: 252 -----NYKEHADAIAEELNNDGLTTGVCHGDRSQGNRRRALKEFKEGKLRVLVATDVAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++  +        +H++ GR GR       + L        +     ++  
Sbjct: 307 GLDIQGLPHVVNYDLPFLAEDYVHRI-GRTGRAGLQGHAVSLVGREDELTAVQIERLIGQ 365


>gi|294670965|ref|ZP_06735821.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307452|gb|EFE48695.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 453

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 126/346 (36%), Gaps = 45/346 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQAV 325
           PT  Q  AI   L+          +     GSGKT   L+     +         G +A+
Sbjct: 26  PTPIQAQAIPFALEGRD------IMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRAL 79

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T  
Sbjct: 80  VLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATPG 135

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLT 438
              D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ +
Sbjct: 136 RLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIET-------IVEATPTDRQTLLFS 188

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEKK 496
           +  D  + K+  K          ++ + R+D+   IE   +   + +    +   I    
Sbjct: 189 ATWDGAVGKLARKLTKNP----EVVEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDA 244

Query: 497 ESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +        +++ E           +   +HG M    +   +   + G CK+L+AT 
Sbjct: 245 NIDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           V   GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 305 VAARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|302387031|ref|YP_003822853.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302197659|gb|ADL05230.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 485

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 139/373 (37%), Gaps = 40/373 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L+ + +  PT+ Q   I   L+    KN ++  ++   GSGKT    I +   +E     
Sbjct: 17  LKGLGYDIPTEVQARVIPAALE----KNDLM--VKAQTGSGKTAAYAIPICELIEWLENK 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E      +  ++    I G    +  +  L++    + H+++G
Sbjct: 71  PQALILTPTRELAVQVKEDFTNIGRFKRLKAAAIYGRHSFSMEKAELKQ----KTHVVVG 126

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+   L L  +        D     G  +++   + +       +L +AT  
Sbjct: 127 TPGRVMDHIKKGTLPLTKINYLVIDEADRMLDMGFIKQVEAIMKELPMERMTMLFSATMP 186

Query: 432 PRTLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                ++     D   I    A      I   +  +   D+      V++ E   +  I 
Sbjct: 187 QEVKNMSLDYMRDPINIDVSEANITTSDIDHFLYYVKEEDKFELLNDVMIVEKPDSCMIF 246

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    + +  V+      ++F      +HG M   D+ S +  FK G  + LIAT 
Sbjct: 247 --------CSTKDRVDIVCERLKNFGYPCNKMHGGMEQADRLSSIKGFKRGEYRYLIATD 298

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   GID+   S++I  +        +H+  GR GR  +    +    P  ++  +    
Sbjct: 299 LAARGIDIETISMVINYDIPLDKENYVHR-PGRTGRAGQKGKAVSFLDPAQTRYLHDIQE 357

Query: 610 VLKNTEDGFLIAE 622
           ++     GF I E
Sbjct: 358 LI-----GFSIQE 365


>gi|262274077|ref|ZP_06051889.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
 gi|262221887|gb|EEY73200.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
          Length = 618

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 78/344 (22%), Positives = 139/344 (40%), Gaps = 28/344 (8%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  I F SPT  Q ++I  ++        +  + +   G+GKT    + +   ++ G   
Sbjct: 21  LDAIGFVSPTPIQAASIPLLMTG------VDALGKAQTGTGKTAAFSLPLLNKLDLGQRK 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++MAP   LA Q    +K   Q    + V  I G      + +AL       AHI++
Sbjct: 75  PQAIVMAPTRELAIQVAAEMKALGQKIDGLKVLEIYGGASIVDQMRALRA----GAHIVV 130

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQ-RLKLTQKATAPHVLLMTATPIP-RTLVLT 438
           GT    +D I   +L L   DE H F + +    L          +M   P   + ++ +
Sbjct: 131 GTPGRVKDLINRERLQL---DEVHTFVLDEADEMLKMGFVDDVTWIMEQAPESAQRVLFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     + +I ++   R+P +  +   NR  E +E+   V+   +K   +   +E ++  
Sbjct: 188 ATMPPMVKEIVDRFL-REPARIDVAGSNRTVEKVEQQFWVVKGVEKDEAMSRLLETEETD 246

Query: 499 ------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R   ER            A +HG +    +E  ++  K G   +L+AT V+ 
Sbjct: 247 ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVEHIKRGVIDILVATDVVA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            G+DV   + +   +      + +H++ GR GR       ILL 
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRAGKAILLV 349


>gi|222054409|ref|YP_002536771.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221563698|gb|ACM19670.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 451

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 65/338 (19%), Positives = 128/338 (37%), Gaps = 27/338 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
           +PT  QE AI   L+          I     G+GKT    +     +         G + 
Sbjct: 23  TPTPIQEQAIPLALEGKD------LIASAQTGTGKTAAFTLPALERLSVRSPIPGRGPRI 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  + ++ Y +  ++    I G MP   + + L R       +I+ T  
Sbjct: 77  LVLTPTRELANQVTDAVRNYGKFIRVTSGAILGGMPYREQLQLLSRP----VDLIVATPG 132

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D +   ++ L  + E        R+     +     +   A    +TL+ T+  D  
Sbjct: 133 RLIDHLDRGRINLSRL-ELLILDEADRMLDMGFSEDVDRIAAAAPANRQTLLFTATMDDV 191

Query: 445 ISKITEKPAGRKPIKTVI----IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
           ++K+ ++   + P++  I    +   +I++ +     +  + +    +       K   F
Sbjct: 192 MAKLAQR-LLKDPVRIEIAGKKMTHEQIEQRLHVADNLQHKTRMLQHLIADGTVTKAIIF 250

Query: 501 RSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +     + L     +   + A +HG MS   +   + + + G  +LL+AT V   G+DV
Sbjct: 251 SATKRDADLLARDLHAQGHAAAALHGDMSQNARNKTIHNMRRGKIRLLVATDVAARGLDV 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
              S +I  +   F    +H++ GR GR       I  
Sbjct: 311 TGISHVINFDLPKFAEDYVHRI-GRTGRAGATGIAISF 347


>gi|89902341|ref|YP_524812.1| ATP-dependent RNA helicase DbpA [Rhodoferax ferrireducens T118]
 gi|89347078|gb|ABD71281.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 473

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 84/460 (18%), Positives = 176/460 (38%), Gaps = 60/460 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + +   T  Q +++   L           I Q + GSGKT    +A+   +      
Sbjct: 33  LQQLGYLEMTPIQAASLPAALAGKD------LIAQAETGSGKTAAFALALLERLNPRRFA 86

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    I++  + T  I V  + G +    +R +LE+     AHI++
Sbjct: 87  VQALVLCPTRELADQVTIEIRRLARATDNIKVVTLCGGVALRGQRASLEQ----GAHIVV 142

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R                           +TL
Sbjct: 143 GTPGRVMDHLAREYLNLEALNTLVLDEADRMLDMGFFDDMATVAKQ------CPKERQTL 196

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I K+ ++   R+P++ V +   + + +IE+    ++   +   +   +   
Sbjct: 197 LFSATYPEGIEKLAQQFM-REPLR-VQVAAQQTESLIEQRFYEVTRANRFEAVALLLNHF 254

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +   +   +  +    S   ++G +   +++ V+  F N +  +L+AT 
Sbjct: 255 RPISTLAFCNTKQQCKDLVTYLQAQGFSALALYGELEQRERDQVLAQFSNRSASVLVATD 314

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP---------- 599
           V   G+D+     +I  +        +H++ GR GR  E    + L              
Sbjct: 315 VASRGLDITQLEAVINVDITPDPEVHVHRI-GRTGRAGESGLALSLASMNEMGSVGKIEQ 373

Query: 600 --LSKNSYTRLSVLKNTEDGFLI-AEEDLKQRK-------EGEILG--IKQSGMPKFLIA 647
               ++ + +L  LK T  G L+     L+           G++LG     +G  +  I 
Sbjct: 374 YQKRESVWHKLDELKPTGQGPLLPPMVTLQILGGRKEKIRPGDVLGALTADAGYSREQIG 433

Query: 648 QPEL--HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +  +    + + + R  A   + +  +   V+G+S+++ L
Sbjct: 434 KIVVTEFTTFVAVQRDIALAAMQKL-NAGKVKGKSVKVRL 472


>gi|42522929|ref|NP_968309.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574125|emb|CAE79302.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 656

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 132/345 (38%), Gaps = 29/345 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +PT  Q  A+  +L           I     G+GKT    I +   +++     QA++++
Sbjct: 66  TPTPIQRQALPILLAG-----ANDFIGLASTGTGKTAAFGIPLIENIDSTVKDTQALVLS 120

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E +    +   + V  I G      +   ++R     AHI++ T     D
Sbjct: 121 PTRELALQVAEQLTLLGKKKGVRVVTIYGGASYRTQIDGIKR----GAHIVVATPGRLVD 176

Query: 389 SIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            ++           ++L   DE    G ++ L+    AT P     +     RT + ++ 
Sbjct: 177 FLEQKMIKLQSVKTVVLDEADEMLSMGFKEALETILSATQPDD-SDSVRAACRTWLFSAT 235

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
              ++ ++T       P    +  +    + IE++   +    K   I   ++   E   
Sbjct: 236 MSSEVRRLTSTYLE-NPETVSVNKVGGTADTIEQVYYTVKNSYKTEVIGRLLQTLPEFYG 294

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V     +          +HG  S  ++E+ +  FK    K+++AT V   G
Sbjct: 295 IIFCQTKMEVAELADVLTQRGFPADSLHGDKSQQEREATLKKFKQRQVKVIVATDVAARG 354

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +D+ D + ++  +      + +H++ GR GR  +  + I L +P 
Sbjct: 355 LDIKDLTHVVNHSLPWDSESYVHRI-GRTGRNGQKGTAITLVNPE 398


>gi|323493918|ref|ZP_08099035.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546]
 gi|323311859|gb|EGA65006.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546]
          Length = 458

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 77/423 (18%), Positives = 148/423 (34%), Gaps = 60/423 (14%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ ++  T  Q+ A+  +L           I QG  GSGKT    + + + +      
Sbjct: 18  LDSLGYTEMTPIQQQALPMVLSGKDV------IGQGKTGSGKTATFSLGLLSNLNVKRFR 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++ P   LA Q  + I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 72  VQTLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 127

Query: 381 GTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D +        +   L+L   D     G +  +           ++  A    
Sbjct: 128 GTPGRILDHMSKGRISLDELNTLVLDEADRMLDMGFEDAI---------DTIIEAAPAKR 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++    +I  +  K     P    +   +    + +R   + +  ++   +   +
Sbjct: 179 QTLLFSATFPNNIESLAAK-VMVNPEMVKVESTHEKTTIEQRFYQLNTTEERDDALEALL 237

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              K        N +  V+       H   S+  +HG M   ++E  +  F N +  +L+
Sbjct: 238 LTHKPESSVVFCNTKKEVQNVADELSHRGFSVVELHGDMEQREREQALTMFANKSISILV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV +   +            +H++ GR GR          +    +     
Sbjct: 298 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRI-GRTGRAGSKGIAFSFFSEKEAYRVAR 356

Query: 607 RLSVL-----------KNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLI 646
               +           K  E  F    + ++           G+ILG   KQ+G+    I
Sbjct: 357 IDEYMDIAISPVQLPEKPIERPFYPKMQTIQILGGKKQKVRAGDILGALTKQAGLDGKKI 416

Query: 647 AQP 649
            + 
Sbjct: 417 GKI 419


>gi|322374711|ref|ZP_08049225.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
           [Streptococcus sp. C300]
 gi|321280211|gb|EFX57250.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
           [Streptococcus sp. C300]
          Length = 449

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 133/363 (36%), Gaps = 34/363 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +   L L  +        DE    G        +++       LL +AT     + + + 
Sbjct: 135 KRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  KI  K    + +    I +   ++     +++  E  +   +  +       
Sbjct: 195 FMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+ 
Sbjct: 249 --KRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    I    P          ++ K    G 
Sbjct: 307 GVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGL 365

Query: 619 LIA 621
             A
Sbjct: 366 KPA 368


>gi|310657448|ref|YP_003935169.1| ATP-dependent RNA helicase, dead/deah box family [Clostridium
           sticklandii DSM 519]
 gi|308824226|emb|CBH20264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           sticklandii]
          Length = 411

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 78/351 (22%), Positives = 136/351 (38%), Gaps = 22/351 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT+ Q  +I  IL+          I Q   G+GKTL  L+ +   ++      QA+I++
Sbjct: 25  TPTQVQVKSIPYILEGRDV------IAQAQTGTGKTLAFLLPILEKIDVDSEDTQALIIS 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E  +K      I +    G      +   L++       +++GT     D
Sbjct: 79  PTRELAIQISEEAQKLISVKGINILSAYGGQDVEKQLNKLKK----NIPLVVGTPGRILD 134

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            I+   L L  +         Q L +        +   + TP  + ++  S       K 
Sbjct: 135 LIRRESLNLSKLKMLVLDEADQMLHMGFLDEVDAI--FSYTPSEKQVMCFSATFNKEVKK 192

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVE 505
             K    +P    +   N   + I+++ V  ++ KK   +C  I+ ++      F     
Sbjct: 193 LAKTYMNEPHYVSVKGQNVTLDEIDQIIVHTTDRKKQEALCEMIDTQQPFMAIVFCRTKR 252

Query: 506 RFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           R  +L+E  +        +HG +S   +E VM  F+N   +LLIAT V   GIDV   + 
Sbjct: 253 RVTALYEDLSQKGYNCDQLHGDLSQAKREKVMKDFRNAKIQLLIATDVAARGIDVDGITH 312

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           I   +        +H++ GR GR  E  + +    P  + +       +K 
Sbjct: 313 IYNYDMVLDTDTYIHRI-GRTGRAGEKGTAVTFVTPKHNASLEKLEGDIKA 362


>gi|323524408|ref|YP_004226561.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323381410|gb|ADX53501.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 467

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 163/444 (36%), Gaps = 59/444 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + +   T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 24  LTQLGYVEMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARKFA 77

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    I V  + G  P   +  +LE      AHI++
Sbjct: 78  VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH----GAHIVV 133

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D ++   L L     +++DE  R                  ++       +TL
Sbjct: 134 GTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIA------TVVRQCPKERQTL 187

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I K++++       K V +     D  I +    +SE ++ + +   +   
Sbjct: 188 LFSATYPEGIVKLSQQFLRNP--KEVKLAERHDDTKIRQRFYEVSEDERLHAVGLLLNHY 245

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 246 RPVSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATD 305

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH-PPLSKNS---- 604
           V   G+D+     +I  +        +H++ GR GR ++    + L     + +      
Sbjct: 306 VAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQEGWALSLASMDEMGRVGGIEQ 364

Query: 605 --------YTRLSVLKNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLIA 647
                   +    +   + +  L   E L+           G++LG    ++G     I 
Sbjct: 365 AQKREVEWHKLSELTSTSNEPLLPPMETLQILGGRKEKIRPGDVLGALTGEAGFAGSQIG 424

Query: 648 QPELHDS--LLEIARKDAKHILTQ 669
           +  + +    + + R  A+  + +
Sbjct: 425 KINVTEMSTYVAVERSIAREAVRK 448


>gi|145351012|ref|XP_001419882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580115|gb|ABO98175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 440

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 71/365 (19%), Positives = 139/365 (38%), Gaps = 39/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +P+  Q  +   I+      + M+ I     GSGKTL   +     + +           
Sbjct: 49  TPSPIQAQSWPIIM----SGHDMVGI--AATGSGKTLAFGMPALTQIHSQPPCKPGQPIC 102

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LAQQ  +      + + +    + G  P+  ++  ++    G A +I+ T  
Sbjct: 103 LVLAPTRELAQQTAKVFDDAGEASGVRCVCVYGGAPKYEQKAQMKAG--GGAAVIVATPG 160

Query: 385 LFQDS-----IQYYKLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTATPIP-- 432
             +D      I+  ++ ++++DE  R        + R            ++ +AT     
Sbjct: 161 RLRDFMEEGVIKLDRVTMLVLDEADRMLDLGFEPEIRAIAGATRADRQTVMFSATWPQSV 220

Query: 433 RTLVLTSLGDIDISKI----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           ++L    + +    +I     +       I  V+ P ++   +   +K  L +GK+    
Sbjct: 221 QSLASEFMCNPIKVRIGAEGLKASQSITQIVEVVEPQDKDRHLARVMKQYLGKGKEVPRT 280

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                 KKE            L   + +    IHG MS  D+E  +D+FK GT ++LIAT
Sbjct: 281 LIFGLYKKECAN-----LHQRLSREWPAVC--IHGDMSQHDREKSVDAFKKGTSRILIAT 333

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I           +H++ GR GR          +       +   +
Sbjct: 334 DVAARGLDIKEVEYVINYTFPLTTEDYVHRI-GRTGRAGATGLAHTFFTLHDKARAGELV 392

Query: 609 SVLKN 613
           +VL+ 
Sbjct: 393 NVLRK 397


>gi|169860811|ref|XP_001837040.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130]
 gi|116501762|gb|EAU84657.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130]
          Length = 396

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 72/344 (20%), Positives = 131/344 (38%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AI  I+Q          I Q   G+GKT    I++  +++      QA++++
Sbjct: 45  KPSAIQQRAILPIIQGRDV------IAQAQSGTGKTATFSISILQSIDVTVRETQALVLS 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + LE       H++ GT     D
Sbjct: 99  PTRELATQIQSVILALGDYMNVQCHACIGGTSIGEDIRKLEYGQ----HVVSGTPGRVFD 154

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G + ++    +            P  + ++L++ 
Sbjct: 155 MIRRRSLRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLP---------PATQVVLLSAT 205

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+ ++T K     PI+ ++       E I++  V +  E  K   +C   +      
Sbjct: 206 LPYDVLEMTTKFMT-DPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLTITQ 264

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++++M  F++GT ++LI T V   
Sbjct: 265 AVIFCNTRRKVDWLTEKMRASNFTVSSMHGEMVQKERDAIMAEFRSGTSRVLITTDVWAR 324

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GIDV   S++I  +        +H++ GR GR       I    
Sbjct: 325 GIDVQQVSLVINYDLPANRENYIHRI-GRSGRFGRKGVAINFVT 367


>gi|33594279|ref|NP_881923.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|33564354|emb|CAE43658.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|332383691|gb|AEE68538.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
          Length = 477

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 134/362 (37%), Gaps = 40/362 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-----------G 321
           PT  Q  AI  +++          +     G+GKT    + +   +              
Sbjct: 40  PTPIQAQAIPVVVEGRDV------MGAAQTGTGKTAAFTLPILHRLMPLANTSASPARHP 93

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q YE +K+Y+ +T +   ++ G +    +++AL R       +++ 
Sbjct: 94  VRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCE----VLVA 149

Query: 382 THALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D ++   + L  V     DE  R      L   +       ++       + L+
Sbjct: 150 TPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLE------RIIRLLPAQRQGLL 203

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK- 495
            ++    +I K+        P++  +   N   + + ++   +    K   +   ++ + 
Sbjct: 204 FSATFSNEIRKLGRSYLNH-PVEIEVAARNATADTVTQIAYQMHGDTKRAAVVHLVKSRG 262

Query: 496 -----KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  SN +    R     E        IHG  +  D+   +++FK G  ++L+AT V
Sbjct: 263 LKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDLEVLVATDV 322

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV     +I  +  +     +H++ GR GR       I L+     +       +
Sbjct: 323 AARGLDVAGVPCVINYDLPYNAEDYVHRI-GRTGRAGASGEAIALFTADEERYLLDIEKL 381

Query: 611 LK 612
           +K
Sbjct: 382 IK 383


>gi|304395420|ref|ZP_07377303.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304356714|gb|EFM21078.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 460

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 92/455 (20%), Positives = 171/455 (37%), Gaps = 63/455 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           S T  Q + +  ILQ    +       Q   GSGKT    I +   +++     QA+I+ 
Sbjct: 25  SMTPVQAATLPAILQGRDVR------AQAKTGSGKTAAFGIGLLHHIDSTRFQTQALILC 78

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +++  + T+ I V  + G  P + +R +L        HI++GT     
Sbjct: 79  PTRELADQVGNVLRQLARFTRNIKVLTLCGGQPMSAQRDSLVHP----PHIVVGTPGRIL 134

Query: 388 DSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLTSLG 441
           D I    L L  +     DE  R      L   +        ++ ATP   +TL+ ++  
Sbjct: 135 DHINRENLKLDQLNTLVLDEADRMLEMGFLNDMET-------IIEATPASRQTLLFSATW 187

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---- 497
              I+ I+ +   ++   +V+         I++     S  +K   +   + +++     
Sbjct: 188 PDGITAISTRF--QRDALSVVTEEVSELPSIDQQFFEASHNEKLGLLIALLSDRQPSSCV 245

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +   +   +       S   +HG +   D+E V+  F NG+ ++L+AT V   G+
Sbjct: 246 VFCNTKRECDDVAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVATDVAARGL 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN-- 613
           D+   ++++           LH++ GR  R  E    + L        ++     L+   
Sbjct: 306 DIKSLAMVVNYQLAWDPEIHLHRI-GRTARAGEHGVAVSLVAADEMARAHALEDFLQQKL 364

Query: 614 -----------TEDGFLIAEEDL--------KQRKEGEILG--IKQSGMPKFLIAQPEL- 651
                      +      A   L        K R  G+ILG    ++G     I +  L 
Sbjct: 365 PWVSASTLKKGSSKPLPAAMMTLCIDGGRKAKMR-PGDILGALTGEAGYRADQIGKIVLT 423

Query: 652 -HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
              + + I    AK  L +      ++G++ R +L
Sbjct: 424 PTHAYVAIEANHAKAALVKLKQ-GKIKGKTCRAIL 457


>gi|254674247|emb|CBA10031.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha275]
          Length = 462

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 126/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEGRD------IMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET-------IVEATPSDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    +  ++   ++ E+L        K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|166365637|ref|YP_001657910.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
 gi|166088010|dbj|BAG02718.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
          Length = 479

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 73/367 (19%), Positives = 139/367 (37%), Gaps = 40/367 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + F+ PT+ Q  AI  +L+     + M+ + Q   G+GKT    + +   ++     
Sbjct: 18  LETLGFTTPTEIQTKAIPLLLEG----HDMVGMSQ--TGTGKTAAYSLPLLERMDTKNPN 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LAQQ    IK ++ + ++ +  + G      + ++LE+       I++G
Sbjct: 72  VQALILTPTRELAQQVASAIKDFSDDRRLFILTVCGGQSMERQIRSLEK----GVQIVVG 127

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D +   KL        +L   DE    G    +K            + A+P  R
Sbjct: 128 TPGRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVKKI----------LQASPSTR 177

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
                S       +       + PI   +         IE+   ++  G     +   + 
Sbjct: 178 QTACFSATMPREIRDLIANFLKSPISVTVSQPQAAPAKIEQKIYLIPRGWTKLKVLQPLL 237

Query: 494 EKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E +           +       S  +    ++   HG +S + +E ++  F+ G  KL++
Sbjct: 238 EIEPLESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT +   G+DV + S +I  +        +H++ GR GR  +  + I L  P   +    
Sbjct: 298 ATDIAARGLDVENLSHVINYDLPDNAETYIHRI-GRTGRAGKTGTAISLVEPIDRRLLRQ 356

Query: 607 RLSVLKN 613
               L+ 
Sbjct: 357 IEQRLRQ 363


>gi|218505708|ref|NP_001136206.1| predicted gene, EG668137 [Mus musculus]
          Length = 411

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 136/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 60  KPSAIQQRAIKQIMKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 114 PTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 170 MIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           +       +I  K      + IK   + + R +   + L  +       +A   C     
Sbjct: 230 NKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCIT--- 286

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G
Sbjct: 287 ------KRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARG 340

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S+II  +  +     +H++ GR GR       I        +            
Sbjct: 341 LDVPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQ 399

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 400 IDEMPMNLADL 410


>gi|262396801|ref|YP_003288654.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|269966728|ref|ZP_06180805.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|262340395|gb|ACY54189.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|269828651|gb|EEZ82908.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 430

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 69/377 (18%), Positives = 142/377 (37%), Gaps = 39/377 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--------GQ 323
             T  Q+ AI      M++K   +       G+GKT    + M   +            +
Sbjct: 23  KLTPIQQKAIP-----MARKGHDIF-ATAQTGTGKTAAFSLPMIQQLLDSNRSASRKTAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA+Q  + IK YT+ T + V  I G    + +  ALE        I++ T 
Sbjct: 77  ALILAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQVAALEN----GVDILVATP 132

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPR 433
              ++ I+           L+    D     G     R  +    T P +++ +AT   +
Sbjct: 133 GRLEEHIEQGNVSVAHLEFLVFDEADRILDMGFIHAVRKIMLDVDTDPQIMMFSATTSSQ 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
             +L         +I  + A      +  V+ P+++  +     +++  +  K   +   
Sbjct: 193 LNLLAKDILRKPKRIEVERANTTAQTVAHVLYPVDQERKTELLSELIGRKNWKQVLVFVN 252

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +E       +  E    L      ++ + HG  +   +   ++ FK+G  ++++AT V 
Sbjct: 253 YKE-------TANEVVKELKLDGIKAV-VCHGDRAQSARRRALEEFKSGKARVMVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D   ++  +        +H++ GR GR  +    +   +           +++
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRI-GRTGRAGKQGHAVSFVNRDEELTVVQVENLI 363

Query: 612 KNTEDGFLIAEEDLKQR 628
           +       +A  + KQR
Sbjct: 364 QQRIRRIELAGYEPKQR 380


>gi|91792775|ref|YP_562426.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714777|gb|ABE54703.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 468

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 137/381 (35%), Gaps = 39/381 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ ++   +      +PT  QE A+   L           +     GSGKTL  L+  
Sbjct: 17  FSLDKRLLDSLKHLGITTPTPIQEQALPIALTGKD------LMASSKTGSGKTLAFLLPA 70

Query: 315 AAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              +       +   + +I+ P   LAQQ Y  ++    NTQ     I G      + KA
Sbjct: 71  MQRIISTKALSKRDPRVLILLPTRELAQQVYGQLRLLVANTQYKAVSILGGENFNDQAKA 130

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKAT 419
           L R    + H I+ T     D +Q   L        IL   D     G   +L     A 
Sbjct: 131 LSR----EPHFIVATPGRIADHLQQRHLHLNGLELLILDEADRMLDLGFAPQLAAINAAA 186

Query: 420 AP---HVLLMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  L+ +AT        +  T L   +   I         I   II ++ +D    
Sbjct: 187 DHKRRQTLMFSATLEHDEINEIAATLLKSPNHIAIGAAYTEHADITQRIILVDHLDHKQA 246

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L+ VL+       I            R   ER  SL      + A + G ++   +  +
Sbjct: 247 LLEHVLTNETNKQIIIFT-------ATRVDTERLASLLADKGFATAALSGNLNQGARNQI 299

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           MD F  G  ++L+ T V   G+D+++ S++I  +   F    +H++ GR GR       +
Sbjct: 300 MDQFARGQKQILVTTDVASRGLDLINVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDAV 358

Query: 594 LLYHPPLSKNSYTRLSVLKNT 614
            L  P    +     + L+ T
Sbjct: 359 SLVGPKDWDSFIKVQAFLRKT 379


>gi|187957004|gb|AAI58084.1| EG434080 protein [Mus musculus]
          Length = 411

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 136/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 60  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 114 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 170 MIRRRSLPTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           +       +I  K      + IK   + + R +   + L  +       +A   C     
Sbjct: 230 NKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCIT--- 286

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G
Sbjct: 287 ------KRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARG 340

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S+II  +  +     +H++ GR GR       I        +            
Sbjct: 341 LDVPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQ 399

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 400 IDEMPMNLADL 410


>gi|309378859|emb|CBX22564.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 462

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 125/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L           +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPSALDGRD------IMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMRSGKVDFARLEVLILDEADRMLDMGFIDDIET-------IVEATPSDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    +  ++   ++ E+L        K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|271961946|ref|YP_003336142.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
 gi|270505121|gb|ACZ83399.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
          Length = 561

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 74/356 (20%), Positives = 126/356 (35%), Gaps = 40/356 (11%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
             L  + +  PT  Q  AI  +L+          + Q   G+GKT    + +   +   G
Sbjct: 23  HALSGLGYEEPTPIQREAIPPLLEGRD------LLGQAATGTGKTAAFALPVLQRMTRDG 76

Query: 323 -----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                 A+++ P   LA Q  E    Y +     V  I G  P   + +AL++       
Sbjct: 77  GGGEPMALVLVPTRELAVQVSEAFHHYGRELGARVLPIYGGQPIGRQLRALQQ----GVD 132

Query: 378 IIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMT 427
           I++ T     D I    L        +L   DE    G  + +   L +       +L +
Sbjct: 133 IVVATPGRALDHIGRGTLRLDDLEMVVLDEADEMLDMGFAEDIEAILQETPENRQTVLFS 192

Query: 428 ATPIPRTLVLTSLGDIDISKI-----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           AT  PR   +      D  +I     T  P     ++     + R  +     +V+  E 
Sbjct: 193 ATMPPRINGIARRHLNDPVRIEMGRETTAPGEAPLVRQTAYVVPRAHKPAALGRVLDVEA 252

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             A  +  +         R  V++              +HG M    ++ VM   + GT 
Sbjct: 253 PTAAIVFCRT--------RDEVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRLRTGTA 304

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            LL+AT V   G+D+   + ++  +      + +H++ GRVGR       I L  P
Sbjct: 305 DLLVATDVAARGLDIEQLTHVVNYDVPSAPESYVHRI-GRVGRAGREGVAITLAEP 359


>gi|229007762|ref|ZP_04165353.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock1-4]
 gi|228753532|gb|EEM02979.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock1-4]
          Length = 481

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 139/371 (37%), Gaps = 40/371 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L ++ +  PT+ Q   I   L+      +   +++   GSGKT    I +   VE     
Sbjct: 19  LTSLKYEQPTEVQGKVIPVALE------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E I    +  +I    + G  P   ++  L++    + HI++G
Sbjct: 73  PQALILTPTRELAVQVKEDITNIGRFKRIKATAVYGKSPFVRQKLELKQ----KTHIVVG 128

Query: 382 THALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D I+           L++   DE    G   ++   + +  T    +L +AT  
Sbjct: 129 TPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTMLFSATLP 188

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T +      +I         I+ +++ +   ++      +   E   +  I 
Sbjct: 189 EDVENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREEEKFSLLQDITTLENPDSCIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +E  +  FR          +        IHG M   D+ +VM+ FK G  + L+AT 
Sbjct: 249 CRTQENVDHVFRQ--------LKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + + +I  +      + +H+  GR GR       I    P   +       
Sbjct: 301 VAARGIDIENITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFVTPYEERFLVEIEE 359

Query: 610 VLKNTEDGFLI 620
            +     GF I
Sbjct: 360 YI-----GFEI 365


>gi|71656836|ref|XP_816959.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70882121|gb|EAN95108.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 617

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 73/420 (17%), Positives = 147/420 (35%), Gaps = 44/420 (10%)

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPIN---VEGKIAQKILRNIPFSPTKSQE 278
            P ++R   +     +   + +      +  +  +       I Q  +      PT  Q 
Sbjct: 39  KPQQQRSDAEVAQWLRENRITIYGDRVPQPMLLFSDLVAPDSIHQSFIDLGYKEPTPIQS 98

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPI 330
            A   +L      N    +     GSGKT+  ++  A  + A        G  A+++AP 
Sbjct: 99  IAWPILL------NSRDLVGVAKTGSGKTMAFMVPAALHIMAQPPVRPGDGPIALVLAPT 152

Query: 331 GILAQQHYEFIKKYTQNTQIIVE-IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  E  +K  +    I    + G  P+  + + L        H+ I T     D 
Sbjct: 153 RELAVQIEEETRKVLRRIPTIATTCLYGGAPKGPQIRTLRA----GVHVAIATPGRLIDL 208

Query: 390 IQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVLTS 439
           ++           L+L   D     G + +++    Q  +    L+ +AT       L +
Sbjct: 209 LEMRATNLLRVTYLVLDEADRMLDMGFEIQIRKICSQIRSDRQTLMFSATWPQEIRNLAA 268

Query: 440 LGDIDISKI---TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
               D  ++   +E       +   +I +   D+     +++   G++   I  + +   
Sbjct: 269 SFQRDFIRVHVGSEDLVANNDVCQHVIVVEEYDKQRRLEEILQKLGRQRVLIFVKTK--- 325

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               R+      SL      ++  IHG      ++ V+D F+     +L+AT V   G+D
Sbjct: 326 ----RTADSLHGSLRRILGGAVMAIHGDKEQSQRDYVLDRFRRDDRSVLVATDVAARGLD 381

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGE-EISSCILLYHPPLSKNSYTRLSVLKNTE 615
           + +  ++I  +        +H++ GR GR      +   +     SK     + +L+   
Sbjct: 382 IKNLDVVINFDMPTNIEDYVHRI-GRTGRAGQRGDAYSFVSGADPSKTIRDLVDLLRRAN 440


>gi|328699290|ref|XP_001948649.2| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
           [Acyrthosiphon pisum]
          Length = 678

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 134/371 (36%), Gaps = 45/371 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q  AI  I++          +     GSGKT   ++ +   +             
Sbjct: 275 TPTPVQNYAIPIIIEGRD------LMASAQTGSGKTAAYVLPILHNLLKQPTQLIYDEHH 328

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR-KALERIAHGQAHI 378
                VI+AP   L  Q  E + K+++ T I   ++ G     H++ K L+R      HI
Sbjct: 329 CEPHVVIIAPTRELVSQISECVWKFSKGTDIRNGLLYGGTSVYHQKSKILQR----GVHI 384

Query: 379 IIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-- 431
           +  T     D ++     +  +   ++DE  R      L +  K     VL  +  P   
Sbjct: 385 LTATPGRLIDFVEKGIVTFSSVKFFVLDEADRM-----LDMGFKPDIEQVLTNSTMPSIE 439

Query: 432 -PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +T++ ++     I  +         I   +  I    + + +  + +++ KK   +  
Sbjct: 440 SRQTIMFSATFASPIQHMATSYLKSDYIFVAVGEIGGACKDVVQTVIEVTKFKKKNALLD 499

Query: 491 QIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            I+E +           + V +   +           IHG     ++E  +  FK    K
Sbjct: 500 IIKEMENCQGTIVFVERKKVADYTAAYLSEVDFPTTSIHGAREQPEREQALRDFKTNRMK 559

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSK 602
           +L+AT V   G+D+   + ++  +        +H++ GR GR       I  + P     
Sbjct: 560 ILVATAVAARGLDIKGVNYVVNFDLPKTIDEYVHRI-GRTGRLGNAGKAISFFDPESDGP 618

Query: 603 NSYTRLSVLKN 613
            +   + +LK 
Sbjct: 619 LAAELIKILKQ 629


>gi|308485730|ref|XP_003105063.1| hypothetical protein CRE_20763 [Caenorhabditis remanei]
 gi|308257008|gb|EFP00961.1| hypothetical protein CRE_20763 [Caenorhabditis remanei]
          Length = 401

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 132/343 (38%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ AI  IL+          I Q   G+GKT    I++   ++      QA+I++
Sbjct: 48  KPSAIQQRAIPAILK------ARDVIAQAQSGTGKTATFSISVLQTLDTQVRETQALILS 101

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 102 PTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQ----HVVSGTPGRVFD 157

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G +++L    +       V+L++AT     L +T
Sbjct: 158 MIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMT 217

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + +++ +   + L  +       Y      +   
Sbjct: 218 SKFMTDPIRILVKRDELTLEGIKQFFVAVDKEEWKFDTLIDL-------YDTLTITQAVL 270

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+      +    +++ +HG M   D++ VM  F+ GT ++LI+T V   G+D
Sbjct: 271 FCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLD 330

Query: 557 VVDASI--IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   S+  +I  +  +     +H++ GR GR       I    
Sbjct: 331 VPQVSLVSVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVK 372


>gi|308496397|ref|XP_003110386.1| hypothetical protein CRE_05666 [Caenorhabditis remanei]
 gi|308243727|gb|EFO87679.1| hypothetical protein CRE_05666 [Caenorhabditis remanei]
          Length = 562

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 72/382 (18%), Positives = 129/382 (33%), Gaps = 39/382 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q  +    +           I     GSGKTL  ++                G  
Sbjct: 154 KPTVIQSISWPIAMSGRD------IISIAKTGSGKTLAFMLPALVHTTKQPHRQRGEGPS 207

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LAQQ  E    +  +  + +  + G   +  + + LER       +++ T 
Sbjct: 208 VLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLER----GVDVVVATP 263

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D +            L+L   D     G   Q R  + Q       L+ +AT    
Sbjct: 264 GRLLDFLDNGTTNMKRCSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMFSATWPKE 323

Query: 434 TLVLTSLGDIDISKIT----EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              + S    D + +     E  A     + V I      +      +     +K     
Sbjct: 324 VRSMASDFQKDAAFLNVGSLELAANHNITQVVDILEEHGKQAKLMDLLNQIMNQKECKTI 383

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +E K     R   E   ++      ++ I HG  +  +++ V+  FK G   +L+AT 
Sbjct: 384 IFVETK-----RKADELTRAMRRDGWPTLCI-HGDKNQGERDWVLQEFKAGKTPILLATD 437

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV D   +I  +  +     +H++ GR GR ++  +    +    +  +   L 
Sbjct: 438 VAARGLDVDDIKFVINYDYPNNSEDYVHRI-GRTGRRDKKGTAYTFFTHTNASKAKDLLK 496

Query: 610 VLKNTEDGFLIAEEDLKQRKEG 631
           VL   +     A  D+  R  G
Sbjct: 497 VLDEAKQTVPQALRDMANRSYG 518


>gi|261392357|emb|CAX49897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
 gi|325204361|gb|ADY99814.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240355]
          Length = 462

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 126/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEGRD------IMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET-------IVEATPSDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    +  ++   ++ E+L        K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|221053806|ref|XP_002258277.1| eukaryotic initiation factor [Plasmodium knowlesi strain H]
 gi|193808110|emb|CAQ38814.1| eukaryotic initiation factor, putative [Plasmodium knowlesi strain
           H]
          Length = 390

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 73/376 (19%), Positives = 134/376 (35%), Gaps = 40/376 (10%)

Query: 244 RKQFKKEIGIPIN---VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQG 300
           R   K EI        ++  + + I       P+  Q+  IK IL           ILQ 
Sbjct: 8   RMSEKYEICTSFENIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILSGRDV------ILQS 61

Query: 301 DVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
             G+GKT V  +     V       Q +I++P   LA+Q  +          + +    G
Sbjct: 62  QSGTGKTCVFAVGALNCVNRNLSETQVIILSPTRELAEQTQKVCLALADYIHVTIYCCIG 121

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQ 409
               +   KAL    +   HII GT       +           +L++   DE    G +
Sbjct: 122 GKKMSDDIKAL----NNGVHIISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFK 177

Query: 410 QRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPI 465
           +++    +       ++L +AT     L +T+       KI  K      + IK   + I
Sbjct: 178 EQVYDIYRFLSPNTQIVLSSATLPQEVLEITNKFMHRPVKILVKRDELTLEGIKQFFVSI 237

Query: 466 NRIDEVIERLK--VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
            +     E L          +A   C           +  V+      +    ++  +H 
Sbjct: 238 EKEQWKYETLADLYESLTITQAVVFCNT---------KMKVDWLTKKMQEANFTVCKMHA 288

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            MS  +++ +M  F+    ++LI+T +   G+DV + S+++  +  +   + +H++ GR 
Sbjct: 289 GMSQSERDDIMLKFRQCKFRVLISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRI-GRS 347

Query: 584 GRGEEISSCILLYHPP 599
           GR       I      
Sbjct: 348 GRFGRKGVAINFVKND 363


>gi|219667645|ref|YP_002458080.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
 gi|219537905|gb|ACL19644.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 428

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 142/372 (38%), Gaps = 31/372 (8%)

Query: 260 KIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
              QK L    +S  T  Q  AI  +L+ +        +     G+GKT    I +  ++
Sbjct: 13  NPIQKALAAQGYSEATPIQAEAIPHLLEGLD------LLGCAQTGTGKTAAFAIPILQSL 66

Query: 319 EAGG---------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
             G          +A+++AP   LA Q  E    Y  N  +   +I G + QA + + LE
Sbjct: 67  AMGQGLLKGKRQIRALVLAPTRELATQIAESFTAYGVNLPLRTLVIFGGVGQAPQTRKLE 126

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           +       I++ T     D I    + L  V+        Q L +        ++     
Sbjct: 127 K----GIDILVATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYL-P 181

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA---- 485
              + ++ ++   ++I K+ +    + P+K  + P     ++IE+    + +  KA    
Sbjct: 182 RERQNMLFSATMPVEIEKLADT-ILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAALLT 240

Query: 486 YWICPQIEEKKESNFRSVV---ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           YW+     +      R+     +    L++   +++AI HG  S  ++E  + +FK    
Sbjct: 241 YWLKNNEYDSVLVFSRTKHGADKIVKELNKKGFTAVAI-HGNKSQANREQALHAFKKRKT 299

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+AT +   G+D+ + S +I  N        +H++ GR GR       I         
Sbjct: 300 RILVATDIAARGLDIQELSHVINYNLPEVPETYIHRI-GRTGRAGLGGKAITFCDFEEKP 358

Query: 603 NSYTRLSVLKNT 614
                   +  T
Sbjct: 359 LLRDIQKRIGKT 370


>gi|42784637|ref|NP_981884.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42740569|gb|AAS44492.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 481

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 83/366 (22%), Positives = 137/366 (37%), Gaps = 45/366 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           PT+ Q   I   LQ      +   +++   GSGKT    I +   VE      QA+++ P
Sbjct: 27  PTEVQGEVIPVALQ------KKDLVVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTP 80

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I    +  +I    I G  P A ++  L++    + HI++GT     D 
Sbjct: 81  TRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ----KTHIVVGTPGRVLDH 136

Query: 390 IQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLTS 439
           I+           L++   DE    G   ++   + +  T    +L +AT       L+ 
Sbjct: 137 IEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTMLFSATLPEDVERLSR 196

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-----SEGKKAYWICPQIEE 494
                 + I  K AG   I T  I     + + +    +L      E   +  I  + +E
Sbjct: 197 TYMNAPTHIEIKAAG---ITTDKIEHTLFEAIEDEKFSLLKDVTTIENPDSCIIFCRTQE 253

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             +  +R          +        IHG M   D+  VMD F+ G  + L+AT V   G
Sbjct: 254 NVDHVYRQ--------LKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           ID+ + + +I  +      + +H+  GR GR       I    P  ++        +   
Sbjct: 306 IDIDNITHVINYDIPLEKESYVHR-TGRTGRAGNSGKAITFITPYENRFLEEIEEYI--- 361

Query: 615 EDGFLI 620
             GF I
Sbjct: 362 --GFEI 365


>gi|330994043|ref|ZP_08317973.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1]
 gi|329758989|gb|EGG75503.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1]
          Length = 508

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 136/370 (36%), Gaps = 36/370 (9%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  Q+ +  + +  PT  Q  AI  +L           +     G+GKT    + M   
Sbjct: 37  SEPIQRAIDEMGYRHPTPIQAQAIPYVLMGRDV------LGVAQTGTGKTASFTLPMLEI 90

Query: 318 VEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           ++         +++I+ P   LA Q  E    Y ++ ++   ++ G    A +++ L R 
Sbjct: 91  LQGSRARARMPRSLILEPTRELALQVAENFVNYGKHLKLTHALLIGGESMAEQKEVLNR- 149

Query: 372 AHGQAHIIIGTHALFQDSIQYYKL-----ILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
                 ++I T     D  +   L      L+++DE  R      +   +K      ++ 
Sbjct: 150 ---GVDVLIATPGRLIDLFERGGLLLTQTKLLVIDEADRMLDMGFIPDIEK------IVS 200

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
             +P+ +TL  ++    +I ++ +         TV  P + +   IE    ++    K  
Sbjct: 201 MLSPLRQTLFFSATMAPEIRRLADAFLRNPKEITVSRPSS-VASTIETGLAIVDAKDKRR 259

Query: 487 WICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +   + E          N +  V+           S   +HG ++   + S +++FK+G
Sbjct: 260 ALRKLLREADMQNAIVFCNRKRDVDVLCKSLIKHGFSAGALHGDLAQSVRFSTLEAFKSG 319

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+L+ + +   GID+   S +   +        +H++ GR GR         L  P  
Sbjct: 320 ELKILVCSDIAARGIDIGGLSHVFNFDLPFHAEDYVHRI-GRTGRAGRTGHAYSLATPDE 378

Query: 601 SKNSYTRLSV 610
              +     +
Sbjct: 379 EALAQAIEKL 388


>gi|289434525|ref|YP_003464397.1| DbpA-type ATP-dependent RNA helicase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170769|emb|CBH27309.1| DbpA-type ATP-dependent RNA helicase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 474

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 131/370 (35%), Gaps = 38/370 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  ++ +  + +   T  Q+  I   L           + +   GSGKT    I +A  
Sbjct: 11  SEEIKRAINELGYKDATPVQKEVIPVALTGKD------IVAKSQTGSGKTAAFAIPIAEQ 64

Query: 318 V---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           V   E   QA+I+ P   L  Q         +  +I    I G  P A ++  L +    
Sbjct: 65  VIWEENKPQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKN-- 122

Query: 375 QAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
             HI++GT     D I+   L        +L  VDE    G   ++   L         L
Sbjct: 123 --HIVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNL 180

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             +AT       L      D   I        PI  + +     ++ ++   V+++E   
Sbjct: 181 FFSATMPDEMQDLIKRYQEDPVVIEMAAEKTNPITHIEMQTENKEKTLQD--VLITENPD 238

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +  I    + +            + L +    + A IHG +   ++   MD FK+G  + 
Sbjct: 239 SAIIFCNTKNQ-----------VDELSDLLQVNAAKIHGGLRQEERFRAMDDFKSGKSRF 287

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   GIDV + +++I  +        +H++ GR GR       I       +   
Sbjct: 288 LIATDVAGRGIDVENVTLVINYDLPVEKENYVHRI-GRTGRAGNSGKAISFVKTNENPLL 346

Query: 605 YTRLSVLKNT 614
                +L  T
Sbjct: 347 RDIEDMLNIT 356


>gi|10039333|dbj|BAB13309.1| PL10-related protein PoPL10 [Ephydatia fluviatilis]
          Length = 491

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 62/373 (16%), Positives = 131/373 (35%), Gaps = 44/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ A+  IL       +   +     GSGKT   LI +   V             
Sbjct: 54  KPTPVQKHALPIILS------KRDLMACAQTGSGKTAAFLIPILDLVFQQGCPRPPSDSR 107

Query: 319 -----EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                +    A+++ P   LA Q +E  +K++  +++   ++ G      + + LE    
Sbjct: 108 YSGRRKQYPTALVLGPTRELAVQIFEEARKFSYRSRVRPCVVYGGADIGAQMRDLEH--- 164

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
              H+++ T     D ++  K+ L  V     DE  R          ++     V  M  
Sbjct: 165 -GCHLLVATPGRLVDMMERGKIGLDGVRYLVLDEADRMLDMGFEPQIRRIVEQDV--MPK 221

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +TL+ ++    +I  +  +      I   +  +    + I +  V + E  K  ++
Sbjct: 222 TGDRQTLMFSATFPKEIQMLA-RDFLHDYIFLAVGRVGSTSQNITQKVVWVDECDKRSFL 280

Query: 489 CPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
              +               +   +  ++       S   IHG  +  ++E  + SF+   
Sbjct: 281 LDLLNASAPDTLTLVFVETKKNCDALDNFLYTQGYSCTCIHGDRTQGEREQALHSFRTAR 340

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V    +D+ +   ++  +        +H++ GR G+   +      ++    
Sbjct: 341 MPILVATAVAARSLDIPNVKHVVNFDMPADIEEYVHRI-GRTGKVGNLGLATSFFNERNR 399

Query: 602 KNSYTRLSVLKNT 614
                 + +L  T
Sbjct: 400 NLCNDLMELLLET 412


>gi|238023960|ref|YP_002908192.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1]
 gi|237878625|gb|ACR30957.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1]
          Length = 461

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 61/377 (16%), Positives = 137/377 (36%), Gaps = 45/377 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q  AI  +L           +     G+GKT    + +   +   G        +
Sbjct: 23  EPTPVQARAIPAVLGGKDV------LAAAQTGTGKTAGFALPLLQRLVQQGPAVSSNRAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +    Y    ++ +    G +    +   L +       +++ T 
Sbjct: 77  VLVLVPTRELAEQVLQSFADYGCGLELRMLAAYGGVSINPQMMKLRK----GVDVLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGV-----QQRLKLTQKATAPHVLLMTATPIPR 433
               D     ++Q+ ++  +++DE  R        +         T    LL +AT    
Sbjct: 133 GRLLDLNRQNAVQFDQVRTLVLDEADRMLDLGFARELDAVFAALPTRRQTLLFSATFPDE 192

Query: 434 TLVLTSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              + +    +  +I+     A    ++  ++ +++ ++    + ++   G +   +  +
Sbjct: 193 IRAMAAKRLHEPVQISVSAPNATASRVRQWVVTVDKRNKPELFMHLLAEHGWQHALVFAR 252

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    R+ V+   +  E    ++  IHG      +   ++ FK G  ++L+AT V 
Sbjct: 253 T--------RAGVDYLAARLEAAGHAVDTIHGDKPQPARLRALERFKRGEVRMLVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D  ++I  +        +H++ GR GR       + L     +       +++
Sbjct: 305 ARGLDIDDLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALI 363

Query: 612 KNT-----EDGFLIAEE 623
           + T     E GF  AE 
Sbjct: 364 RQTLRREEEPGFE-AEH 379


>gi|322373478|ref|ZP_08048014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
 gi|321278520|gb|EFX55589.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
          Length = 528

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 34/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     +   E   QA+++A
Sbjct: 23  KPSPIQELTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLDKIRTEENTIQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ ++  + V  + G      + KAL       AHI++GT     D
Sbjct: 77  PTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLV 436
            I+   L L  +        DE    G        +++       LL +AT     + + 
Sbjct: 133 LIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRIG 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +  + D +  KI  K      +    I +   ++     +++  +  +   +  +     
Sbjct: 193 VQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPELSIVFGRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D
Sbjct: 249 ----KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +   + +   +      + +H++ GR GR  +    I    P 
Sbjct: 305 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGQSGQSITFVAPN 346


>gi|221141602|ref|ZP_03566095.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|302751962|gb|ADL66139.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. JKD6008]
          Length = 506

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 135/350 (38%), Gaps = 37/350 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L ++ F  PT  Q+ +I   LQ +        + Q   G+GKT    I +   V  + G 
Sbjct: 17  LESMGFKEPTPIQKDSIPYALQGID------ILGQAQTGTGKTGAFGIPLIEKVVGKQGV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q++I+AP   LA Q  E ++++++   + V  + G MP   + KAL++       I++GT
Sbjct: 71  QSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK----GPQIVVGT 126

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +          + LIL   DE    G    ++                   +T
Sbjct: 127 PGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ--------RQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I  + ++   + P     +     D  IE    ++ E +K       ++ 
Sbjct: 179 ILFSATMPKAIQALVQQFM-KSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +      F     R + L     S       +HG ++   +  V+  FKN    +L+AT
Sbjct: 238 HQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|24645031|ref|NP_649788.2| eIF4AIII [Drosophila melanogaster]
 gi|7299019|gb|AAF54221.1| eIF4AIII [Drosophila melanogaster]
          Length = 399

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 75/389 (19%), Positives = 141/389 (36%), Gaps = 37/389 (9%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            +N++ ++ + I       P+  Q+ +I  I++          I Q   G+GKT    I+
Sbjct: 30  AMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDV------IAQAQSGTGKTATFSIS 83

Query: 314 MAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           +  +++      Q + ++P   LA Q  + I        +   +  G        + L+ 
Sbjct: 84  ILQSLDTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDY 143

Query: 371 IAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKL--TQKATA 420
                 HI+ GT     D I+           L+L   DE    G ++++         A
Sbjct: 144 GQ----HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 199

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVV 478
             V+L++AT     L +TS    D  +I  K      + IK   + + R +   + L  +
Sbjct: 200 TQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 259

Query: 479 LSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
                  +A   C           +  V+           +++ +HG M   +++ +M  
Sbjct: 260 YDTLTITQAVIFCNT---------KRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKE 310

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+ G  ++LI T V   GIDV   S++I  +  +     +H++ GR GR       I   
Sbjct: 311 FRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFV 369

Query: 597 HPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
                +             D   +   DL
Sbjct: 370 KSDDIRILRDIEQYYSTQIDEMPMNVADL 398


>gi|304391684|ref|ZP_07373626.1| probable ATP-dependent RNA helicase Exp9 [Ahrensia sp. R2A130]
 gi|303295913|gb|EFL90271.1| probable ATP-dependent RNA helicase Exp9 [Ahrensia sp. R2A130]
          Length = 532

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 126/359 (35%), Gaps = 29/359 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI ++L      NR   +     G+GKT    + M +  E G       + +
Sbjct: 23  EPTPIQAQAIPEVL------NRRDVMGIAQTGTGKTAAFTLPMISLSEKGRARARMPRTL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  +  +KY  N ++ V ++ G      + K L+R     A ++I T   
Sbjct: 77  ILEPTRELAAQVEQNFEKYAVNHKLNVALLIGGTSMEKQMKILDR----GADVLIATPGR 132

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D  +  ++++  V E        R+           ++       +TL  ++     I
Sbjct: 133 LLDLFERGRILMNGV-EILVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPII 191

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-------- 497
            K+ ++         V         V ++L     +  +       + + ++        
Sbjct: 192 EKLADQFLQNPVQVMVAAAATTAKTVEQKLVKAPKKDFEKRAKLRDVIDSQDNIKNAIIF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N +  V   +        S+  +HG M    +   + +F++     L+A+ V   G+D+
Sbjct: 252 CNRKVDVATLHRSMTKRGYSVGSLHGDMDQSARMKTLAAFRDNEITHLVASDVAARGLDI 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
            D S +   +        +H++ GR GR            P          +V+  T D
Sbjct: 312 PDVSHVFNYDVPIHPDDYVHRI-GRCGRAGRDGWAFTFVTPADD---RYIKAVMALTGD 366


>gi|74142079|dbj|BAE41100.1| unnamed protein product [Mus musculus]
          Length = 411

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 135/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    +++   ++      QA+I+A
Sbjct: 60  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSVSVLQCLDIQVRETQALILA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 114 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++ +         A  V+L++AT     L +T
Sbjct: 170 MIRRRSLRTRAIKMLVLDEADEMLNKGFKELIYDVYRYLPPATQVVLISATLPHEILEMT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 230 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 282

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 283 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 342

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 343 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 401

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 402 EMPMNVADL 410


>gi|28900445|ref|NP_800100.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362335|ref|ZP_05775298.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260877397|ref|ZP_05889752.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260898434|ref|ZP_05906930.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|28808756|dbj|BAC61933.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085113|gb|EFO34808.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308090744|gb|EFO40439.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308111119|gb|EFO48659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|328470398|gb|EGF41309.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
          Length = 430

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/377 (17%), Positives = 142/377 (37%), Gaps = 39/377 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
             T  Q+ AI      M++K   +       G+GKT    + M   +   G+        
Sbjct: 23  KLTPIQQKAIP-----MARKGHDIF-ATAQTGTGKTAAFSLPMIQQLLDSGRTASRKTAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA+Q  + IK YT+ T + V  + G    + +  ALE        I++ T 
Sbjct: 77  ALILAPTRELAEQIADNIKAYTKYTDLSVVAVFGGRKMSSQVSALEN----GVDILVATP 132

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPR 433
              ++ I+           L+    D     G     R  +    T P +++ +AT   +
Sbjct: 133 GRLEEHIEQGNVSVANLEFLVFDEADRILDMGFIHAVRKIMLDVDTDPQIMMFSATTSSQ 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
             +L         +I  + A      +  V+ P+++  +     +++  +  +   +   
Sbjct: 193 LNLLAKDILRKPKRIEVERANTTAHTVAHVLYPVDQERKTELLSELIGRKNWQQVLVFVN 252

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +E       +  +    L      ++ + HG  +   +   ++ FK G  ++++AT V 
Sbjct: 253 YKE-------TANDVVKELKLDGIKAV-VCHGDRAQSARRRALEEFKTGKVRVMVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D   ++  +        +H++ GR GR  +    +   +           +++
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRI-GRTGRAGKQGHAVSFVNRDEELTVVQVENLI 363

Query: 612 KNTEDGFLIAEEDLKQR 628
           +       +A  + KQR
Sbjct: 364 QQRIRRIELAGYEPKQR 380


>gi|312899136|ref|ZP_07758514.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
 gi|310619803|gb|EFQ03385.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
          Length = 419

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 77/353 (21%), Positives = 134/353 (37%), Gaps = 23/353 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            PT  QE A+   L+          ++Q   G+GKTL  L+ +   ++      QA+IMA
Sbjct: 25  EPTAVQEQAVPAALKG------HNLLVQAQTGTGKTLAFLLPIFQGIKKDVSMTQALIMA 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L++Q       +T  T + +  + G     ++ + L R    +  +IIGT     D
Sbjct: 79  PTRELSEQLATVADSFTPVTGLDILNLIGGKTIENQLQKLHR----RPQVIIGTPGRLLD 134

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK- 447
             +   L L  V         Q L+    +    ++ M  TP  R L+  S    D  + 
Sbjct: 135 HCRRNSLDLSGVHYVVVDEADQMLQSGFLSEVDELIGM--TPKKRQLLFFSATIPDKVRS 192

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNFRSVV 504
           + +K   R    TV        E IE+   ++SE +K   +C  + E        F +  
Sbjct: 193 LAKKHMDRPLSLTVREGETVTLENIEQRIYMMSEDRKFEKLCDMLTEFNPYLAVVFCNTK 252

Query: 505 ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           +R   L     +    +A + G MS   +  VM  F     ++L+A+ +   GID+   S
Sbjct: 253 DRTKKLASDLIARGFNVAELQGDMSQGRRNQVMRDFAKAKTQILVASDIAARGIDIEGIS 312

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
            +   +        +H++ GR GR       ++                ++ T
Sbjct: 313 HVFSYDVPGDTDYYIHRI-GRTGRAGSSGLSVMFATGADEDKIRRIEHTIQAT 364


>gi|229528115|ref|ZP_04417506.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229334477|gb|EEN99962.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
          Length = 416

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 144/366 (39%), Gaps = 35/366 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 32  EPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 85

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  E + +      +    + G + +  ++ AL        +I++ T     D 
Sbjct: 86  TRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALAE----NPNILVATTGRLFDL 141

Query: 389 ---SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               ++  ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 142 TQSGLRLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTAGVRQTVMCSATFSDD 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 195 LKLKAQQLMRVPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 254

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S  ++E+ +  FKNG+ ++LIAT ++  GI +  
Sbjct: 255 AKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATDLLARGIHIEQ 314

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPLS----KNSYTRLSVLKNT 614
             ++I           +H++ GR  R  +    + L+ H  +       + T+  +    
Sbjct: 315 LPVVINFELPMHAETYVHRV-GRTARAGQQGIALSLVCHGEMDALNAIRTLTQRQLPVQN 373

Query: 615 EDGFLI 620
            DGF +
Sbjct: 374 LDGFPV 379


>gi|327485960|gb|AEA80366.1| ATP-dependent RNA helicase VCA0990 [Vibrio cholerae LMA3894-4]
          Length = 406

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 144/366 (39%), Gaps = 35/366 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 22  EPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 75

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  E + +      +    + G + +  ++ AL        +I++ T     D 
Sbjct: 76  TRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALAE----NPNILVATTGRLFDL 131

Query: 389 ---SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               ++  ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 132 TQSGLRLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTAGVRQTVMCSATFSDD 184

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 185 LKLKAQQLMRVPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 244

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S  ++E+ +  FKNG+ ++LIAT ++  GI +  
Sbjct: 245 AKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATDLLARGIHIEQ 304

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPLS----KNSYTRLSVLKNT 614
             ++I           +H++ GR  R  +    + L+ H  +       + T+  +    
Sbjct: 305 LPVVINFELPMHAETYVHRV-GRTARAGQQGIALSLVCHGEMDALNAIRTLTQRQLPVQN 363

Query: 615 EDGFLI 620
            DGF +
Sbjct: 364 LDGFPV 369


>gi|311743209|ref|ZP_07717016.1| DeaD protein [Aeromicrobium marinum DSM 15272]
 gi|311313277|gb|EFQ83187.1| DeaD protein [Aeromicrobium marinum DSM 15272]
          Length = 567

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 125/360 (34%), Gaps = 42/360 (11%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           G     +L  + +  PT  Q  AI  +L           +     G+GKT    + +   
Sbjct: 14  GDALVAVLAGLGYETPTPIQAQAIGPLLDGRDV------VGLAQTGTGKTAAFALPILER 67

Query: 318 VEAGG---QAVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           ++      QA+I+AP   LA Q    F     +   + +  + G    A + + L+R   
Sbjct: 68  LDPDRAETQALILAPTRELALQVSDAFATYAARTPGLRILPVYGGQGYAAQLRGLQR--- 124

Query: 374 GQAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHV 423
             AH+++GT     D +            L+L   DE    G  + +   L        V
Sbjct: 125 -GAHVVVGTPGRVIDHLDRGSLELSGLDHLVLDEADEMLTMGFAEDVERILADTPEDKQV 183

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGR-----KPIKTVIIPINRIDEVIERLKVV 478
            L +AT  P    L      D   +    A R     +     +    + D +   L+V 
Sbjct: 184 ALFSATMPPAIRRLAKKYLNDPVDVATPAATRSTTTVRQRWISVPHHGKFDALTRLLEVE 243

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
             +G   +              +   E             A ++G +    +E ++   K
Sbjct: 244 NGDGMIIFV-----------RTKQATEELAEKLRSRGFDAAALNGDLVQAQRERIVGQLK 292

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G+  +L+AT V   G+DV   + +I  +  H   + +H++ GR GR       +L   P
Sbjct: 293 GGSLDILVATDVAARGLDVDRITHVINHDIPHDAESYVHRI-GRTGRAGRSGEAVLFVTP 351


>gi|309798558|ref|ZP_07692833.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           infantis SK1302]
 gi|308117794|gb|EFO55195.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           infantis SK1302]
          Length = 525

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 133/363 (36%), Gaps = 34/363 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +   L L  +        DE    G        +++       LL +AT     + + + 
Sbjct: 135 KRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  KI  K    + +    I +   ++     +++  +  +   +  +       
Sbjct: 195 FMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+ 
Sbjct: 249 --KRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    I    P          ++ K    G 
Sbjct: 307 GVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVSPNEMGYLQIIENLTKKRMKGL 365

Query: 619 LIA 621
             A
Sbjct: 366 KPA 368


>gi|228477095|ref|ZP_04061733.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           salivarius SK126]
 gi|228251114|gb|EEK10285.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           salivarius SK126]
          Length = 528

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 34/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     +   E   QA+++A
Sbjct: 23  KPSPIQELTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLDKIRTEENTIQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ ++  + V  + G      + KAL       AHI++GT     D
Sbjct: 77  PTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLV 436
            I+   L L  +        DE    G        +++       LL +AT     + + 
Sbjct: 133 LIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRIG 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +  + D +  KI  K      +    I +   ++     +++  +  +   +  +     
Sbjct: 193 VQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPELSIVFGRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D
Sbjct: 249 ----KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +   + +   +      + +H++ GR GR  +    I    P 
Sbjct: 305 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGQSGQSITFVAPN 346


>gi|114765123|ref|ZP_01444268.1| putative ATP-dependent RNA helicase protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114542527|gb|EAU45553.1| putative ATP-dependent RNA helicase protein [Roseovarius sp.
           HTCC2601]
          Length = 430

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 127/354 (35%), Gaps = 25/354 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q  AI   L+          +     G+GKTL   + +   + A          +
Sbjct: 24  EPTPIQNQAIPLALEGHDV------LGLAQTGTGKTLAFGLPLIDGLLAQPGKPAPKTVK 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   L  Q  + +++ T  T++ V  + G      +   L R       I++ T 
Sbjct: 78  ALVLAPTRELVNQIADSLRQLTDGTKLRVGTVVGGQSINRQINFLSR----GTDILVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    + L  V +       Q L +        +     TP  +T++ ++    
Sbjct: 134 GRLIDLMDRKAVDLSTVRQLVLDEADQMLDMGFIHALRRIAPQLGTP-RQTMLFSATMPK 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK--KAYWICPQIEEKKESNFR 501
            + +++           V  P    D++ + +  V   GK  K   +  + +E     F 
Sbjct: 193 QMEELSSAYLTNPRRVQVSPPGKAADKITQSVHFVDKAGKPSKLRELLGRDDESLTLVFA 252

Query: 502 SVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                   L +   +   + A IHG  S   ++  + +F++G   +L+AT V   GID+ 
Sbjct: 253 RTKHGAERLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRDGDINVLVATDVAARGIDIP 312

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
             + ++  +        +H++ GR  R       I    P  +        ++K
Sbjct: 313 GVAYVVNYDLPEVPDNYVHRI-GRTARAGREGEAIAFCAPDEADLLRQIQKLMK 365


>gi|218768385|ref|YP_002342897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
 gi|121052393|emb|CAM08725.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
 gi|319410631|emb|CBY91000.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
           2594]
          Length = 462

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 126/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEGRD------IMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIET-------IVEATPEDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    +  ++   ++ E+L        K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDADI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|308048143|ref|YP_003911709.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307630333|gb|ADN74635.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 444

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 137/387 (35%), Gaps = 42/387 (10%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------- 318
            ++ F+  T+ Q+ AI   +           +     GSGKTL  L+     +       
Sbjct: 17  DHLGFAEATEIQQKAIPTAIAGKD------LLASSRTGSGKTLAFLLPAMQRLIRSKPLS 70

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           +   + +I+AP   LA+Q Y  ++    NT     +I G      + KAL R      H 
Sbjct: 71  KRDPRVLILAPTRELAKQVYGQLRLVVANTSYKSLLILGGEDFNQQSKALAR----DPHF 126

Query: 379 IIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP---HVLLMT 427
           ++ T     D +++  L        IL   D     G   +L+   KA        L+ +
Sbjct: 127 VVATPGRLADHLEHGHLYLHGLEMLILDEADRMLDLGFADQLQAIHKAADHRKRQTLMFS 186

Query: 428 ATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           AT             L +    +I  +      I   ++  + +D    +LK +L +   
Sbjct: 187 ATLDHAAVNQFGAQLLNNPTRIRIDSEAEIHSDIHHRMLFSDHLDHKEAQLKALLEKQDF 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              I            R   +R   L   +  S   + G ++   +  +M  F  G  K+
Sbjct: 247 KQLILFT-------ATRGDTDRLAVLLSEWGYSTLALSGELNQTARSQIMQDFAAGKAKI 299

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LI T V   G+D+   S ++  +        +H++ GR GR         L  P     S
Sbjct: 300 LITTDVASRGLDIPQVSHVVNFDLPKHPEEYVHRV-GRTGRAGAKGDAFSLVGPK-DWPS 357

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEG 631
           + +L         F  A E L+ + +G
Sbjct: 358 FKKLEAFLQQPLAFE-AIEGLEAKFKG 383


>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 510

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 126/368 (34%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           SPT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 55  SPTPIQAKAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPQASTSASPARH 108

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    ++ Y ++T +   ++ G +    + + L R       I+I
Sbjct: 109 PVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRR----GVEILI 164

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 165 ATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 224

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
                 L  T L +    ++    +    +  V+  +   D+    +K++   G K   +
Sbjct: 225 SGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAVVKLIRERGLKQVIV 284

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E        IHG  S  ++   +D+FK G  + L+AT
Sbjct: 285 F--------CNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKRGEVEALVAT 336

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 337 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 395

Query: 609 SVLKNTED 616
            ++K   D
Sbjct: 396 KLIKRPLD 403


>gi|161523807|ref|YP_001578819.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189351431|ref|YP_001947059.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|160341236|gb|ABX14322.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
 gi|189335453|dbj|BAG44523.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 480

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 124/357 (34%), Gaps = 29/357 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----------EAG 321
           SPT  Q+ AI  +L           +     G+GKT    + +   +          +  
Sbjct: 23  SPTPIQQQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHTFYTEHRSAKRA 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R       I++ 
Sbjct: 77  VRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKR----GVDIVVA 132

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +Q   + L  +D         R+           +L    P  + L+ ++  
Sbjct: 133 TPGRLLDHMQQKTIDLSDLD-ILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATF 191

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-- 499
             +I  + +      P    +   N   E + +    +   +K   +   I E       
Sbjct: 192 SDEIKALADSLLD-SPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVL 250

Query: 500 ----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +    R          S   IHG  S   +   +  FKN T ++L+AT +   GI
Sbjct: 251 VFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGI 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           D+     ++  +  +     +H++ GR GR       + L      +       ++K
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLVCVDEKQLLRDIERLIK 366


>gi|294934696|ref|XP_002781195.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239891530|gb|EER12990.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 584

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 61/379 (16%), Positives = 139/379 (36%), Gaps = 44/379 (11%)

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA- 320
            ++  +     PT  Q+      L        M+ + Q   GSGKT+  ++     V A 
Sbjct: 186 MKEFEKAGYTEPTNIQKIGWPVAL----SGRDMVGVAQ--TGSGKTVAFMLPAIIHVNAQ 239

Query: 321 -------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                  G   +++ P   LA Q      ++ +   ++   I G +P+ ++   L R   
Sbjct: 240 APLKHGDGPVVLVLVPTRELAMQVQAEATRFGKMAGLMNTAIFGGVPRYNQANDLRR--- 296

Query: 374 GQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               I I T     D ++       ++  +++DE  R                  ++   
Sbjct: 297 -GVEICIATPGRLLDFLETGVTNLKRVTYLVLDEADRMLDMGFEPQI------RRIVSQI 349

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIK-TVIIPINRIDEVIERLKVVLSEGKKAYW 487
            P  +T + ++    ++  +       +PI+ TV     + +  +++   V+SE  K   
Sbjct: 350 RPDRQTTMWSATWPKEVQSMARDFCREEPIRLTVGNTQLQANPDVKQRVEVVSEMDKRQM 409

Query: 488 ICPQIEEKKES--------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
               ++E              +   +       +   + A IHG     +++ +++ FK 
Sbjct: 410 FFDWLKETYPKGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDFKT 469

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--- 596
           G C +L+AT V + G+D+ +   ++  +        +H++ GR GR   + + +      
Sbjct: 470 GRCNVLVATDVAQRGLDIKNVEWVVNYDMPKTVEDYVHRI-GRTGRAGAVGNSLTFITND 528

Query: 597 --HPPLSKNSYTRLSVLKN 613
              P   + +   +  +++
Sbjct: 529 THTPDRVRMAKDIVKCMED 547


>gi|254460192|ref|ZP_05073608.1| ATP-dependent RNA helicase [Rhodobacterales bacterium HTCC2083]
 gi|206676781|gb|EDZ41268.1| ATP-dependent RNA helicase [Rhodobacteraceae bacterium HTCC2083]
          Length = 721

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 152/424 (35%), Gaps = 58/424 (13%)

Query: 272 SPTKSQESA-IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---------AG 321
           + T  Q      + L           ++    GSGKT+   +A+A  +          A 
Sbjct: 33  TLTPVQVEVSQPEFL-------DQDLLVSAQTGSGKTVAFGLAIAPTILEENGRFERAAT 85

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+++AP   LA Q           T ++V    G M     R+ALER     AHI++ 
Sbjct: 86  PLALVIAPTRELALQVKREFDWLFAPTGVVVASTVGGMDSRTERRALER----GAHIVVA 141

Query: 382 THALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D I            ++L   DE    G  + L+    AT             R
Sbjct: 142 TPGRLRDHIMRGAIDLSALRAVVLDEADEMLDMGFSEDLEYILDATPSE---------RR 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I+K+ +K   +   +   I        I    + ++       I   + 
Sbjct: 193 TLMFSATVPRGIAKLAQKYQRKDTKRVETIGEGPQHADITYRAMTVAPSDTENAIINTLR 252

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             +  N       R++V R  +   +   S+  + G +S  ++   + + ++G  ++ +A
Sbjct: 253 YYEAQNAIVFANTRAMVARLTARFSNRGFSVVSLSGELSQNERTHALQAMRDGRARVCVA 312

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +    G   LH+  GR GR        L+        +   
Sbjct: 313 TDVAARGIDLPNLELVIHADLPSNGETLLHR-SGRTGRAGRKGISALIVPGRQKSKAERL 371

Query: 608 LSVLKNTEDGF-LIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHI 666
           L   K T +     + +D+  R E  +L              P   ++L E  +  A  +
Sbjct: 372 LRFAKLTAEWSNAPSADDVNARDEERML------------NDPSWSEALSEDEQSFAGKL 419

Query: 667 LTQD 670
           L+Q 
Sbjct: 420 LSQY 423


>gi|88798356|ref|ZP_01113941.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea sp.
           MED297]
 gi|88778796|gb|EAR09986.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea sp.
           MED297]
          Length = 433

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 121/343 (35%), Gaps = 37/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           +PT  Q   I  +L           +     G+GKT    + +   +            +
Sbjct: 23  TPTPIQAQGIPAVLSGRD------LLAAAQTGTGKTAGFTLPIIQHLITENRPVKANRCR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA Q  + +  Y + T +  E++ G +    + + L R       I++ T 
Sbjct: 77  VLVLTPTRELAAQVEDNVTAYAKYTDVRSEVVFGGVKINPQMQKLRR----GVDILVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     +I +  L ++++DE  R      +            +M   P  R  ++ 
Sbjct: 133 GRLLDLHSQNAIDFRDLEVLVLDEADRMLDMGFIHDI-------RRIMRLLPTQRQNLMF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +   K     P++  + P N   E + +  + + + KK   +   ++++   
Sbjct: 186 SATFSDEIRALAKTIVENPVEVSVTPKNTTAERVRQQVIPVDKAKKTALLIDLLKKETWH 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +    R            A IHG  S   +   +  FK+   ++L+AT +  
Sbjct: 246 QVLVFSRTKHGANRIAEKLNKAKIPAAAIHGNKSQGARTRALSEFKSNDIRVLVATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            GID+     +I  +  +     +H++ GR GR       I  
Sbjct: 306 RGIDIDQLPHVINFDLPNVAEDYVHRI-GRTGRAGSDGDAISF 347


>gi|294625538|ref|ZP_06704165.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294663958|ref|ZP_06729380.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292600152|gb|EFF44262.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292606274|gb|EFF49503.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 460

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 134/372 (36%), Gaps = 37/372 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q+ AI  +L           +     G+GKT    + +   +    Q        
Sbjct: 23  TPTPIQQQAIPLVLAGHD------LLAGAQTGTGKTAAFGLPLLQHLGTAPQTVNGPRKP 76

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+ P   LA Q ++ ++ Y++  +I   +I G +   ++  AL R       ++I  
Sbjct: 77  RALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRR----GVDLLIAC 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D I+   + L  ++        + L +    +   +L        +TL+ ++  +
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFE 192

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
            +I ++      R P++  + P N + E I      +   +K   +   + +        
Sbjct: 193 ENIKQLA-LEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLV 251

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   ++     E      A IHG  S   +   +  FK G   +L+AT +   GID
Sbjct: 252 FARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +     +I  +        +H++ GR GR       I L     +K     + +L     
Sbjct: 312 IDQLPKVINYDLPMVAEDYVHRI-GRTGRNGSTGEAISLVAQDEAKLLRQIVRMLG---- 366

Query: 617 GFLIAEEDLKQR 628
                  D++ R
Sbjct: 367 ------RDVEIR 372


>gi|78049289|ref|YP_365464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325928526|ref|ZP_08189714.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|78037719|emb|CAJ25464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325541065|gb|EGD12619.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 462

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 134/372 (36%), Gaps = 37/372 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q+ AI  +L           +     G+GKT    + +   +    Q        
Sbjct: 23  TPTPIQQQAIPLVLAGHD------LLAGAQTGTGKTAAFGLPLLQHLGTAPQTVNGPRKP 76

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+ P   LA Q ++ ++ Y++  +I   +I G +   ++  AL R       ++I  
Sbjct: 77  RALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRR----GVDLLIAC 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D I+   + L  ++        + L +    +   +L        +TL+ ++  +
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFE 192

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
            +I ++      R P++  + P N + E I      +   +K   +   + +        
Sbjct: 193 ENIKQLA-LEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLV 251

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   ++     E      A IHG  S   +   +  FK G   +L+AT +   GID
Sbjct: 252 FARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +     +I  +        +H++ GR GR       I L     +K     + +L     
Sbjct: 312 IDQLPKVINYDLPMVAEDYVHRI-GRTGRNGSTGEAISLVAQDEAKLLRQIVRMLG---- 366

Query: 617 GFLIAEEDLKQR 628
                  D++ R
Sbjct: 367 ------RDVEIR 372


>gi|57640241|ref|YP_182719.1| DEAD/DEAH box RNA helicase [Thermococcus kodakarensis KOD1]
 gi|57158565|dbj|BAD84495.1| DEAD/DEAH box RNA helicase [Thermococcus kodakarensis KOD1]
          Length = 406

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 79/344 (22%), Positives = 127/344 (36%), Gaps = 38/344 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT  Q   I  +L   S       + Q   GSGKT    + +  +++      QA+I+ P
Sbjct: 24  PTDIQREVIPLLLSAES-----DIVGQSKTGSGKTAAFGLPILDSIDESIREVQALILTP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + ++      +I V  + G  P   + +ALE    G  HI++GT     D 
Sbjct: 79  TRELAIQVTDELRSLRGKRRIYVYSVYGGQPIGPQIRALE----GGVHIVVGTPGRVLDH 134

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLTS 439
           I    L L  V        D     G Q+ +            VL+ +AT     L+L  
Sbjct: 135 INRGTLNLDGVRFFVLDEADRMLDMGFQEDIEAIFRATPKEKRVLMFSATMPMDVLLLAK 194

Query: 440 LGDID-----ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
               +     +S+    P   +      +P  R D + + L    +E       C    E
Sbjct: 195 KYMRNPEVVIVSRDELVPGEVEQEYIEAVPHRRFDLLTKILSDESNE-FYGIVFCQTKAE 253

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            +E + R     F             ++G MS   +E   + FK    K+L+AT V   G
Sbjct: 254 TRELSMRLRAAGF---------RAEALNGDMSQPAREKTFNRFKARKTKILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +DV + + +I  +        +H++ GR GR  +    I    P
Sbjct: 305 LDVPEITHVINYSIPMNPEQYIHRI-GRTGRMGKKGKAITFIAP 347


>gi|33598065|ref|NP_885708.1| putative ATP-dependent RNA helicase [Bordetella parapertussis
           12822]
 gi|33566623|emb|CAE38832.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
          Length = 477

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 134/362 (37%), Gaps = 40/362 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-----------G 321
           PT  Q  AI  +++          +     G+GKT    + +   +              
Sbjct: 40  PTPIQAQAIPVVVEGRDV------MGAAQTGTGKTAAFTLPILHRLMPLANTSASPARHP 93

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q YE +K+Y+ +T +   ++ G +    +++AL R       +++ 
Sbjct: 94  VRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCE----VLVA 149

Query: 382 THALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D ++   + L  V     DE  R      L   +       ++       + L+
Sbjct: 150 TPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLE------RIIRLLPAQRQGLL 203

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK- 495
            ++    +I K+        P++  +   N   + + ++   +    K   +   ++ + 
Sbjct: 204 FSATFSNEIRKLGRSYLNH-PVEIEVAARNATADTVTQIAYQMHGDTKRAAVVHLVKSRG 262

Query: 496 -----KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  SN +    R     E        IHG  +  D+   +++FK G  ++L+AT V
Sbjct: 263 LKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDLEVLVATDV 322

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV     +I  +  +     +H++ GR GR       I L+     +       +
Sbjct: 323 AARGLDVAGVPCVINYDLPYNAEDYVHRI-GRTGRAGASGEAIALFTADEERYLLDIEKL 381

Query: 611 LK 612
           +K
Sbjct: 382 IK 383


>gi|23011993|ref|ZP_00052190.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 551

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 130/356 (36%), Gaps = 27/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           SPT  Q  A+   ++                G+GKT    + +   +          G +
Sbjct: 62  SPTPIQTQALPPAMEGRD------LCGIAQTGTGKTAAFALPILHRLSLENRRAPRRGCR 115

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++++P   LA Q  E    Y ++      ++ G +  + + +A+         I++ T 
Sbjct: 116 VLVLSPTRELASQIAESFSDYGRHLPYTSTVVFGGVNISRQERAIAP----GVDILVATP 171

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    L L  V+        Q L L        ++ M      ++L  ++    
Sbjct: 172 GRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAR-RQSLFFSATMPK 230

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------E 497
           +I+ + ++     P++  + P+    E +++  +    G K   +   + + K       
Sbjct: 231 NIAGLADQYLS-NPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVLRDPKIERVLVF 289

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   +R     +      A IHG  S   +E  + +F++G+C++L+AT +   GIDV
Sbjct: 290 TRTKHGADRVVRGLDKVGIVGAAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGIDV 349

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
              + ++  +  +   + +H++ GR  R       I   +              + 
Sbjct: 350 EGVTHVVNYDLPNVPESYVHRI-GRTARAGAEGQAISFCNDEERAYLRDIERTTRQ 404


>gi|307702062|ref|ZP_07639069.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
 gi|307616549|gb|EFN95739.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
          Length = 521

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 133/363 (36%), Gaps = 34/363 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +   L L  +        DE    G        +++       LL +AT     + + + 
Sbjct: 135 KRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  KI  K    + +    I +   ++     +++  E  +   +  +       
Sbjct: 195 FMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+ 
Sbjct: 249 --KRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    I    P          ++ K    G 
Sbjct: 307 GVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGL 365

Query: 619 LIA 621
             A
Sbjct: 366 KPA 368


>gi|255324480|ref|ZP_05365597.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
           SK141]
 gi|255298386|gb|EET77686.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
           SK141]
          Length = 619

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 138/379 (36%), Gaps = 41/379 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  QE  I  +++          +     G+GKT    + + + ++      QA+++A
Sbjct: 77  KPSPIQEETIPILMEGRDV------VGLAQTGTGKTAAFALPVLSQIDTKARHPQALVLA 130

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  + + ++   + V  I G      +   L R     A +I+GT     
Sbjct: 131 PTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRR----GAQVIVGTPGRVI 186

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++   L        +L   DE    G Q+ ++   +           TP  + + L S
Sbjct: 187 DHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILED----------TPDRKQVALFS 236

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               +  +   K     P +  +    R ++ I +  +++    K       +E      
Sbjct: 237 ATMPNAIRRLSKQYLDNPAEVTVKSERRTNDNITQRFLLIPHRAKMDAFTRILEVINYDA 296

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   E           S A I+G ++   +E  +D  K+G   +L+AT V   
Sbjct: 297 IIVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 356

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV   + ++  +  +   + +H++ GR GR       IL   P   +   +   V   
Sbjct: 357 GLDVERITHVVNFDIPNDTESYVHRI-GRTGRAGRSGEAILFVTPRERRMLRSIERVTNA 415

Query: 614 TEDGFLIAEED--LKQRKE 630
             +   +   D   ++RKE
Sbjct: 416 RLEEMDLPSVDEVNEKRKE 434


>gi|241767199|ref|ZP_04764950.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241362168|gb|EER58246.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 489

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 127/368 (34%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
           S T  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 25  SMTPIQAQAIPVVLTGKDV------MGAAQTGTGKTAAFSLPLLQRLLKHESSSTSPARH 78

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   LA Q  + I  Y + T++   ++ G M    +   L++       +++
Sbjct: 79  PVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTLELKK----GVEVLV 134

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFG-----VQQRLKLTQKATAPHVLLMTAT- 429
            T     D I+    +L  V     DE  R          +  L+        LL +AT 
Sbjct: 135 ATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSATF 194

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  + L  + L D    ++         ++      N  D+     +V+ S G K  +I
Sbjct: 195 SPEIKRLAGSYLQDPITIEVARPNETASTVEQHFYSANDDDKRHAIHQVLKSRGIKQAFI 254

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      A +HG  S  ++   +D+FK G   LL+ T
Sbjct: 255 FV--------NSKLGCARLARSLEREGLKTAALHGDKSQDERLKALDAFKQGAVDLLVCT 306

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D   +   +        +H++ GR GR       + L     ++      
Sbjct: 307 DVAARGLDIKDVPAVFNFDVPFNAEDYVHRI-GRTGRAGASGLAVTLVSGSDARLVADIE 365

Query: 609 SVLKNTED 616
            +LK   D
Sbjct: 366 KLLKKKID 373


>gi|26991630|ref|NP_747055.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida KT2440]
 gi|24986724|gb|AAN70519.1|AE016694_2 ATP-dependent RNA helicase DbpA [Pseudomonas putida KT2440]
          Length = 461

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 87/461 (18%), Positives = 176/461 (38%), Gaps = 62/461 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + + S T  Q  ++  IL+          I Q   GSGKT    I +   +     G
Sbjct: 21  LEALGYASMTPIQAQSLPVILKGQD------LIAQAKTGSGKTAAFGIGLLNPINPRYFG 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    I +  + G +    +  +LE      AHII+
Sbjct: 75  CQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH----GAHIIV 130

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-T 434
           GT    Q  +    L+L      ++DE  R                   ++  TP  R T
Sbjct: 131 GTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIAS-------IIGKTPSRRQT 183

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I ++          + V +     D  IE+  + +   ++   +   +  
Sbjct: 184 LLFSATYPAGIKQLAADFMRNP--QQVKVESLHTDNQIEQRFIEIDPQQRLEAVTRVLGH 241

Query: 495 KKESNFRSVV---ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +  +  +     ++   +  H T+       +HG +   D++ V+  F N +  +L+AT
Sbjct: 242 YRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS---- 604
            V   G+D+    ++I           +H++ GR GR  E    + L  P     +    
Sbjct: 302 DVAARGLDIDGLDMVINVELARDAEIHVHRV-GRTGRAGEKGVAVSLVAPAEGHRAQAIE 360

Query: 605 --------YTRLSVLKNTEDG--------FLIAEEDLKQRKEGEILG--IKQSGMPKFLI 646
                   + +L  LKN              IA     + + G+ILG     +G+P   +
Sbjct: 361 ALQNSPLRWDQLDSLKNKGGEPLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQV 420

Query: 647 AQPELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            +  + D  + + + R  AK  + +  +   ++G+++++ +
Sbjct: 421 GKIAIFDFQAFVAVERALAKQAMQRL-NSGKIKGRALKVRI 460


>gi|332667550|ref|YP_004450338.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332336364|gb|AEE53465.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 516

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 69/377 (18%), Positives = 137/377 (36%), Gaps = 46/377 (12%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  Q  + ++ F+  T  Q  AI  +L           I Q   G+GKT    I +  +
Sbjct: 12  SQEVQSAINDMGFAEATPIQSEAIPHLLNGKD------LIGQAQTGTGKTAAFGIPLLES 65

Query: 318 VEAGGQ---AVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAH 373
           ++   +   A+++ P   LA Q  E ++K  +    + +  I G      + K L+    
Sbjct: 66  IDCSTREVAAIVLCPTRELAVQVAEELRKLAKYKKGLFISTIYGGDSIQRQLKELKA--- 122

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLL 425
               +++GT     D +Q   L L  +        DE    G ++ ++            
Sbjct: 123 -GPQVVVGTPGRVMDHLQRKTLRLDHIQMAVLDEADEMLNMGFREDIENVLNQMPE---- 177

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
                  +T++ ++     I +I ++   + PI   ++     +  I+++   +    K 
Sbjct: 178 -----TRQTVLFSATMPRPILEIAKRF-QKSPIHVKVVKEELTNASIDQIYYDIPVQAKE 231

Query: 486 YWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             I   IE           N +  V+           S   IHG ++   + +V+ +F+ 
Sbjct: 232 AVIARLIEYYDLQRVIVFANMKKTVDDLTEGLNLLGISAKAIHGDLNQNQRNAVLTAFRG 291

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   GIDV     +   +  +     +H++ GR GR  ++          
Sbjct: 292 GAVNVLVATDVAARGIDVSSVDGVFNYDLPYDAEYYVHRI-GRTGRAGKLGKSFSFVT-- 348

Query: 600 LSKNSYTRLSVLKNTED 616
                      L++ ED
Sbjct: 349 ----GRNDRYRLRDIED 361


>gi|319638186|ref|ZP_07992949.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
 gi|317400459|gb|EFV81117.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
          Length = 469

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 125/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L           +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALDGRD------IMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIET-------IVEATPTDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    +  ++   ++ E+L        K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|297846156|ref|XP_002890959.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336801|gb|EFH67218.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 539

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 130/369 (35%), Gaps = 44/369 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
            P+  Q      +L           I     GSGKTL   I     V             
Sbjct: 138 KPSPIQSHTWPFLLDGRD------LIGIAKTGSGKTLAFGIPAIMHVLKKNKKLGGGSKN 191

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
                ++++P   LA Q  + + +  +   +    + G   +  +  A+         I+
Sbjct: 192 VNPTCLVLSPTRELAVQISDVLSEAGEPCGLKSICVYGGSSKRPQINAIRS----GVDIV 247

Query: 380 IGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           IGT    +D I+  +L L  V     DE  R                  +L     + + 
Sbjct: 248 IGTPGRLRDLIESNELRLSDVSFVVLDEADRMLDMGFE------EPVRFILSKTNKVRQM 301

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWICPQI 492
           ++ ++   +D+ K+ ++     PIK VI  ++     +V++ ++V+    +    +    
Sbjct: 302 VMFSATWPLDVHKLAQEFMDPNPIKVVIGSVDLAANHDVMQIIEVLDERARDQRLVALLE 361

Query: 493 EEKKESNFRS--------VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +  K    R           ER     +        IHG  +  ++   +  FK G+C L
Sbjct: 362 KYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPL 421

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT V   G+D+ D  ++I  +        +H++ GR GR  +       +       +
Sbjct: 422 LVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRI-GRTGRAGKKGVAHTFFTQQNKGLA 480

Query: 605 YTRLSVLKN 613
              ++VL+ 
Sbjct: 481 GELVNVLRE 489


>gi|321479177|gb|EFX90133.1| hypothetical protein DAPPUDRAFT_300157 [Daphnia pulex]
          Length = 404

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 134/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AI  +++          I Q   G+GKT    I++  ++E      Q ++++
Sbjct: 53  KPSAIQQRAIAPVIKGRDV------IAQAQSGTGKTATFSISILQSLEIQTRETQILVLS 106

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        +      G        + L+       HI+ GT     D
Sbjct: 107 PTRELAVQIQKVILALGDYMNVQCHACIGGTNVGEDVRKLDYGQ----HIVSGTPGRVFD 162

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 163 MIRRRTLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLSATLPHEILEMT 222

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 223 SKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 275

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   +++++M  F+NG  ++LI T V   GID
Sbjct: 276 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDTIMKEFRNGQSRVLITTDVWARGID 335

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S++I  +  +     +H++ GR GR       I        +             D
Sbjct: 336 VQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKNDDIRILRDIEQYYATQVD 394

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 395 EMPMNVADL 403


>gi|78485292|ref|YP_391217.1| ATP-dependent RNA helicase DbpA [Thiomicrospira crunogena XCL-2]
 gi|78363578|gb|ABB41543.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
          Length = 468

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 68/351 (19%), Positives = 134/351 (38%), Gaps = 23/351 (6%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
            T  Q  ++  IL+          I QG  GSGKT    + +   ++      QA+++ P
Sbjct: 33  LTDIQAQSLPPILEGKDV------IAQGKTGSGKTAAFGLGVLQKLDVKNFNVQALVLCP 86

Query: 330 IGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q    I++  +  Q I V  + G MP   +  +L++     AHI++GT    +D
Sbjct: 87  TRELADQVANEIRRLARQLQNIKVLTLCGGMPMGPQISSLQQ----GAHIVVGTPGRIED 142

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++  +L L  V +        R+       +   ++       +TL+ ++     I  I
Sbjct: 143 HLKKARLTLAEV-KILVLDEADRMLEMGFQPSLDTIIDQLPQQRQTLLFSATFPKQIEHI 201

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI-CPQIEEKKE-----SNFRS 502
           +++    +P++  +   +    + +    V S  ++   +    ++ K E      N + 
Sbjct: 202 SQR-IMHQPVRVEVASRHDDSTITQHFYQVDSTEQRLQALRLVLLQAKPESSVVFCNTKK 260

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            V+           S   +HG +   D++  +  F N +  +L+AT V   G+D+     
Sbjct: 261 EVQMVADTLRDAGFSALALHGDLEQRDRDQTLIQFANKSISILVATDVAARGLDIEALDA 320

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           ++  +  H     +H++ GR GR               S    T    L  
Sbjct: 321 VVNFHLAHDPEVHVHRI-GRTGRAGSQGVACSFISDKESYKVATLAEYLGQ 370


>gi|59801077|ref|YP_207789.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|194098823|ref|YP_002001886.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999112|ref|ZP_04719036.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae 35/02]
 gi|240113089|ref|ZP_04727579.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|240125882|ref|ZP_04738768.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254493889|ref|ZP_05107060.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268594948|ref|ZP_06129115.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268599176|ref|ZP_06133343.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268684482|ref|ZP_06151344.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|293398939|ref|ZP_06643104.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|59717972|gb|AAW89377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|193934113|gb|ACF29937.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512929|gb|EEH62274.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548337|gb|EEZ43755.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268583307|gb|EEZ47983.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268624766|gb|EEZ57166.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291610353|gb|EFF39463.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|317164404|gb|ADV07945.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 462

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 137/380 (36%), Gaps = 50/380 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEG------CDIMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++AP   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTSFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET-------IVEATPADRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEK 495
           ++  D  + K+  K        + II + R+D    IE   +   + +    +   I   
Sbjct: 188 SATWDGAVGKLARK----LTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRD 243

Query: 496 KESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +        +++ E           +   +HG M    +   +   + G CK+L+AT
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL-----YHPPLSKN 603
            V   GIDV   + +I  +        +H++ GR GR       I       Y       
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITFAEVNEYVKVHKIE 362

Query: 604 SYTRLSVLKNTEDGFLIAEE 623
            Y    + + T +G   A +
Sbjct: 363 KYINRKLPELTIEGMEPARK 382


>gi|302911254|ref|XP_003050452.1| hypothetical protein NECHADRAFT_71876 [Nectria haematococca mpVI
           77-13-4]
 gi|256731389|gb|EEU44739.1| hypothetical protein NECHADRAFT_71876 [Nectria haematococca mpVI
           77-13-4]
          Length = 688

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 132/374 (35%), Gaps = 45/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------------- 318
           PT  Q+ +I  +   M  ++ M        GSGKT   L  + +                
Sbjct: 220 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQAFINGPSPVPANAAG 273

Query: 319 ------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                 +A   ++I+AP   L  Q YE  +K+   + +   ++ G      + + +ER  
Sbjct: 274 QFGRQRKAYPTSLILAPTRELVSQIYEESRKFAYRSWVRPCVVYGGADIGSQLRQIER-- 331

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMT 427
                +++ T     D I+  ++ L  +     DE  R          Q         M 
Sbjct: 332 --GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEP--QIRRIVEGEDMP 387

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           +T   +TL+ ++    DI  +  +   +  +   +  +    E I +    + +  K   
Sbjct: 388 STQDRQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEYVEDVDKRSV 446

Query: 488 ICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +   +              + + +  +    +       IHG  +  ++E  ++ F+NG 
Sbjct: 447 LLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFRNGR 506

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           C +L+AT V   G+D+ + + +I  +        +H++ GR GR          ++    
Sbjct: 507 CPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGIATAFFNRGNR 565

Query: 602 KNSYTRLSVLKNTE 615
                 + +LK   
Sbjct: 566 GVVRELMELLKEAN 579


>gi|187479813|ref|YP_787838.1| ATP-dependent RNA helicase [Bordetella avium 197N]
 gi|115424400|emb|CAJ50953.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
          Length = 477

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 130/365 (35%), Gaps = 38/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +PT  Q  AI  +L+          +     G+GKT    + +   +     A       
Sbjct: 27  APTPIQAQAIPQVLRG------GDLLAAAQTGTGKTAGFTLPILHMLSQNKPAKRSAGRP 80

Query: 325 --VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +I+ P   L  Q  E ++ Y ++T +   ++ G +    +  AL +       I++ T
Sbjct: 81  RCLILTPTRELTAQVAESVQVYGKHTGLTSMVMFGGVNINPQISALRKP----VDILVAT 136

Query: 383 HALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      +    + ++++DE  R      ++  +K       ++   P  R  +L
Sbjct: 137 PGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRK-------VLALLPKSRQNLL 189

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            S    D  +   +     P +  + P N   E++ +   ++ +  K   +   I E   
Sbjct: 190 FSATFSDEIRELARGVLHNPGEVSVTPRNTATELVTQTVYLVDQAHKRDLVSHLISESGW 249

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +    R          S A IHG  S   +   +  FK+G+  +L+AT + 
Sbjct: 250 HQVLVFTRTKHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALAGFKDGSVAVLVATDIA 309

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     ++     +     +H++ GR GR     + + L      K       ++
Sbjct: 310 ARGLDIDQLPQVVNFELPNVPEDYVHRI-GRTGRAGATGAAVSLVDSSEIKLLKAIERLI 368

Query: 612 KNTED 616
           K T D
Sbjct: 369 KKTID 373


>gi|332306838|ref|YP_004434689.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174167|gb|AEE23421.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 428

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 126/358 (35%), Gaps = 39/358 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QAV 325
           T  Q+ AI      +  +     +     G+GKT    I +   +            +A+
Sbjct: 25  TPIQQKAI------VVARRGRDVLASAQTGTGKTAAFAIPILQQMLDKPKETVSGTTRAI 78

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA+Q    I  Y Q T I V  + G +    +   L+        I+I T   
Sbjct: 79  ILTPTRELAEQLASNIANYAQFTDISVTALYGGVKLGGQASKLKA----GVDIVISTPGR 134

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT--PIPR 433
             + +    + L  V        D     G     R  L Q       LL +AT  P   
Sbjct: 135 LLEHMTLKNIELANVEFVVLDEADRMLDMGFISDVRQMLAQIRAVRQTLLFSATISPTVN 194

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L    L + +  + T+  +    ++ V+ P++  D++     ++  +      +    +
Sbjct: 195 ELAHKLLKNHEEIRATQLNSAADTVQHVMYPVSEEDKIRLFKTLLAEQNWYQVLVFTSTK 254

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           E+         ++  +  ++   +  + H   S   +   +  FK+   ++LIAT V   
Sbjct: 255 EQA--------DKLMAALKNSKINAGVCHADKSQGARRRAIADFKSAKLQVLIATEVAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           GID+     ++  N  +     +H++ GR GR  +  + I        +       ++
Sbjct: 307 GIDIQGLDHVVNYNLPYLPEDYVHRI-GRTGRAGQQGNAISFVSREEERTVERIERLI 363


>gi|325188273|emb|CCA22813.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 465

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 75/344 (21%), Positives = 125/344 (36%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ A+K IL           I Q   G+GKT    +++   +       QA+I+A
Sbjct: 114 KPSAIQQRAVKPILLGHD------CIAQAQSGTGKTATFTVSILQKININLKETQALILA 167

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + I        I V    G          L++      HI++GT     D
Sbjct: 168 PTRELAQQIVKVIAAIGDYMSINVHACVGGTAVRDDIHTLQQ----GVHIVVGTPGRVGD 223

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
            I    L        +L   DE    G Q ++         +  V L +AT     L +T
Sbjct: 224 MINQGALRTEAVKMFVLDEADEMLSRGFQDQIYDVFRFLPESVQVALFSATMPQEVLEVT 283

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIE--RLKVVLSEGKKAYWICPQIEE 494
                D  +I  K      + IK   + I R +   +            +A   C     
Sbjct: 284 QKFMRDPIRIMVKRDELTLEGIKQFFVAIEREEWKFDTLCDLYETLTITQAIIYCNT--- 340

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R  V+      +    +++ +HG M    ++ +M  F++G+ ++LI T ++  G
Sbjct: 341 ------RRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVLITTDLLARG 394

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           IDV   S+++  +        +H++ GR GR       I     
Sbjct: 395 IDVQQVSLVVNYDLPLNRENYIHRI-GRSGRFGRKGVAINFLTE 437


>gi|68474769|ref|XP_718592.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
 gi|68474936|ref|XP_718509.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
 gi|74627388|sp|Q5A9Z6|FAL1_CANAL RecName: Full=ATP-dependent RNA helicase FAL1
 gi|46440277|gb|EAK99585.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
 gi|46440366|gb|EAK99673.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
          Length = 399

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 84/395 (21%), Positives = 139/395 (35%), Gaps = 42/395 (10%)

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           E        + + + F+     P  ++G  A         +P+  Q  AI  I+      
Sbjct: 13  EFSHKSTKGIKVHRTFESMNLKPDLLKGIYAYGFE-----TPSAIQSRAIMQIISGRDT- 66

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNT 348
                I Q   G+GKT    I M   ++      QA+I++P   LA Q    +K      
Sbjct: 67  -----IAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYM 121

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIV 400
            I      G        K L++       I+ GT     D I+   L        IL   
Sbjct: 122 NIHTHACIGGKNVGEDVKKLQQGQ----QIVSGTPGRVIDVIKRRNLQTRNIKVLILDEA 177

Query: 401 DEQHRFGVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEK--PAGRK 456
           DE    G ++++    K    +  V++++AT     L +TS    D  KI  K       
Sbjct: 178 DELFTKGFKEQIYEIYKHLPPSVQVVVVSATLPREVLEMTSKFTTDPVKILVKRDEISLS 237

Query: 457 PIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            IK   +   R D   + L  +       +A   C           +  V       +  
Sbjct: 238 GIKQYYVQCEREDWKFDTLCDLYDNLTITQAVIFCNT---------KLKVNWLADQMKKQ 288

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             ++  +HG M   +++S+M+ F+ G  ++LI+T V   GIDV   S++I  +       
Sbjct: 289 NFTVVAMHGDMKQDERDSIMNDFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKEN 348

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
            +H++ GR GR     + I L              
Sbjct: 349 YIHRI-GRSGRFGRKGTAINLITKDDVVTLKEFEK 382


>gi|332025702|gb|EGI65860.1| ATP-dependent RNA helicase DDX42 [Acromyrmex echinatior]
          Length = 752

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 134/372 (36%), Gaps = 43/372 (11%)

Query: 281 IKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGI 332
           IK I +++S ++    I     GSGKT   +  M   +          G   +I+AP   
Sbjct: 266 IKAIRKNLSGRDI---IGIAKTGSGKTAAFIWPMLVHIMDQRELKAGDGPIGLILAPTRE 322

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
           L+QQ Y+  KK+ +   I V    G   +  + KALE      A I++ T     D ++ 
Sbjct: 323 LSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKALES----GAEIVVATPGRMIDLVKM 378

Query: 393 YK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTSLGD 442
                     L+L   D     G + +++            LL +AT   +   L     
Sbjct: 379 KATNLTRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQTLLFSATFKKKVEKLARDVL 438

Query: 443 IDISKITEKPAG--RKPIKTVII-----PINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            D  +I +   G     +   +I     P  + + +++     LS G    ++       
Sbjct: 439 TDPIRIVQGDVGEANTDVTQHVIMFHNNPSGKWNWLLQNYIEFLSAGSLLIFV------- 491

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E   +  +     + ++HG M  I++  V+ +FK      L+AT V   G+
Sbjct: 492 ---TKKLNAEELANNLKLKEFEVLLLHGDMDQIERNKVITAFKKKEVSTLVATDVAARGL 548

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+     ++  +         H++ GR GR  E  +   L      + +   +  L+   
Sbjct: 549 DIPHIKTVVNYDVARDIDTHTHRI-GRTGRAGEKGTAYTLVTEKDKEFAGHLVRNLEGAN 607

Query: 616 DGFLIAEEDLKQ 627
                +  DL  
Sbjct: 608 QEVPKSLIDLAM 619


>gi|322387454|ref|ZP_08061064.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
           700779]
 gi|321141983|gb|EFX37478.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
           700779]
          Length = 524

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 133/363 (36%), Gaps = 34/363 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYY--------KLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +           LIL   DE    G        +++       LL +AT     + + + 
Sbjct: 135 KRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  KI  K    + +    I +   ++     +++  +  +   +  +       
Sbjct: 195 FMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+ 
Sbjct: 249 --KRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    I    P          ++ K    G 
Sbjct: 307 GVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVSPNEMGYLQIIENLTKKRMKGL 365

Query: 619 LIA 621
             A
Sbjct: 366 KPA 368


>gi|134034090|sp|P0C2M6|DED1_EMENI RecName: Full=ATP-dependent RNA helicase ded1
 gi|259482717|tpe|CBF77461.1| TPA: ATP-dependent RNA helicase ded1 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:P0C2M6] [Aspergillus
           nidulans FGSC A4]
          Length = 668

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/377 (15%), Positives = 135/377 (35%), Gaps = 52/377 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAG--------- 321
           +PT  Q+ +I  +   M+ ++ M        GSGKT   L  +   A + G         
Sbjct: 208 TPTPVQKYSIPIV---MNGRDLM---ACAQTGSGKTGGFLFPILSQAYQNGPAAPPPSAA 261

Query: 322 ----------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                       ++I+AP   L  Q ++  +K+   + +   ++ G      + + +ER 
Sbjct: 262 GQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIER- 320

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHV 423
                 +++ T     D I+  +        LIL   D     G + +++   +      
Sbjct: 321 ---GCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGED--- 374

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
             M      +TL+ ++    DI  +  +   +  +   +  +    E I +    + +  
Sbjct: 375 --MPNVNDRQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEYVEDHD 431

Query: 484 KAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           K   +   +     +         + + +  +    +       IHG  +  ++E  ++ 
Sbjct: 432 KRSVLLDILHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEM 491

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F++G   +L+AT V   G+D+ + + +I  +        +H++ GR GR          +
Sbjct: 492 FRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGIATAFF 550

Query: 597 HPPLSKNSYTRLSVLKN 613
           +          + +LK 
Sbjct: 551 NRGNRGVVRDLIDLLKE 567


>gi|90408322|ref|ZP_01216486.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
 gi|90310553|gb|EAS38674.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
          Length = 579

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 132/372 (35%), Gaps = 41/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q   I  +L           +     G+GKT    + + A ++      Q +++A
Sbjct: 33  TPSPIQAQCIPHLLNGKDV------LGLAQTGTGKTAAFALPLLANIDLSLKAPQVLVLA 86

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  + Y+++     V  I G      +   L R       +++GT     
Sbjct: 87  PTRELAIQVAEAFQTYSRHLAGFHVMPIYGGQSYNIQFGQLRR----GPQVVVGTPGRIM 142

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++   L        +L   DE  R G    ++   K               +T + ++
Sbjct: 143 DHLKRKTLDLSNLTTLVLDEADEMLRMGFIDDVETIMKDMPAK---------HQTALFSA 193

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
                I +IT++     PI+  I       E IE+   ++    K   +   +E ++   
Sbjct: 194 TMPDQIKRITKRYMN-DPIEVKIKAKTSTVENIEQKCWIVRGVNKLDALTRMLETEEFDG 252

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                    + VE    L      S A+ +G M+   +E  +   K+G   +L+AT V  
Sbjct: 253 VIIFARTKTATVELAERLEARGYRSAAL-NGDMNQQTRERTIARLKSGGLDILVATDVAA 311

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   S+++  +      + +H++ GR GR       IL   P   +         +
Sbjct: 312 RGLDVERISLVVNYDIPTDTESYVHRI-GRTGRAGRKGKAILFAAPRERRLLKAIERATR 370

Query: 613 NTEDGFLIAEED 624
                  +   D
Sbjct: 371 QEITIMELPTRD 382


>gi|255642429|gb|ACU21478.1| unknown [Glycine max]
          Length = 413

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 129/346 (37%), Gaps = 33/346 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++AP
Sbjct: 63  PSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ  + ++       + V    G       ++ L+       H ++GT     D 
Sbjct: 117 TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA----GVHTVVGTPGRVFDM 172

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTS 439
           ++   L        +L   DE    G + ++    +   +   V + +AT  P  L +T 
Sbjct: 173 LRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                  +I  K      + IK   + +++ +  +E L          Y      +    
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETL-------CDLYETLAITQSVIF 285

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GIDV
Sbjct: 286 VNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV 345

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
              S++I  +        LH++ GR GR       I       S+ 
Sbjct: 346 QQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTADDSRM 390


>gi|157117281|ref|XP_001653010.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108883352|gb|EAT47577.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 799

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 74/398 (18%), Positives = 143/398 (35%), Gaps = 50/398 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              + ++ + I ++    PT  Q   +   L           I     GSGKT   L  M
Sbjct: 284 FGFDEQLMKAIRKSEYTQPTPIQAQGVPAALSGRD------IIGIAKTGSGKTAAFLWPM 337

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   +I+AP   L+ Q Y+  KK+ +   I V    G   +  + K
Sbjct: 338 LVHIMDQKELGPGDGPIGLILAPTRELSLQIYQEAKKFGKIYNISVCCCYGGGSKWEQSK 397

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK- 417
           ALE+     A I++ T     D ++           L+L   D+    G + +++     
Sbjct: 398 ALEQ----GAEIVVATPGRMIDMVKMKATNLQRVTYLVLDEADKMFNLGFEPQVRSICNH 453

Query: 418 -ATAPHVLLMTATPIPRTLVLTSLGDIDISKIT--EKPAGRKPIKTVII----PINRIDE 470
                  +L +AT   R   L      D  +I   +     + I   +I    P ++ + 
Sbjct: 454 VRPDRQTMLFSATFKKRIERLARDVLTDPVRIMHGDLGEANEDITQHVIVMNNPAHKWNW 513

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           ++ ++  +LSEG    ++         +      +  N+L       + ++HG M   D+
Sbjct: 514 LLAKMVELLSEGTVLIFV---------TKKADAEQVANNLRLKEYDPV-LLHGDMDQADR 563

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             V+  F+    ++++AT V   G+D+     +I  +         H++ GR GR  E  
Sbjct: 564 NIVITRFRKREVEIMVATDVAARGLDIPHIKNVINYDIARDIDTHTHRV-GRTGRAGEKG 622

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDG-----FLIAEE 623
           +   L      + +   +  L+            +A +
Sbjct: 623 TAYTLVVDKDKEFAGHLVRNLEGANQEVPEELMKLAMQ 660


>gi|83746106|ref|ZP_00943161.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551]
 gi|83727289|gb|EAP74412.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551]
          Length = 603

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 66/395 (16%), Positives = 135/395 (34%), Gaps = 44/395 (11%)

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           R+  +  +            + +  + +  PT  Q  AI  IL+          +     
Sbjct: 52  RRSNRFSMSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKG------GDLLAGAQT 105

Query: 303 GSGKTLVALIAMAAAVEAGG--------------QAVIMAPIGILAQQHYEFIKKYTQNT 348
           G+GKT    + +   + A                +A+++ P   LA Q  E ++ Y +  
Sbjct: 106 GTGKTAGFTLPLLHRLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYL 165

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQ 403
            +   ++ G +    +  AL+R       I++ T     D +         + L+++DE 
Sbjct: 166 PLKSMVMFGGVGINPQIDALKR----GVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEA 221

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            R      +   +K      +L    P  + L+ ++    DI  + ++    +P    + 
Sbjct: 222 DRMLDMGFIHDIRK------ILNILPPKRQNLLFSATFSDDIRALADRLLD-QPALIEVA 274

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSS 517
             N   E +E+    +   +K   +   + +            +    R          S
Sbjct: 275 RRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIS 334

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              IHG  S   +   +  FK GT ++L+AT +   GID+     ++  +  +     +H
Sbjct: 335 ALAIHGNKSQSARTRALSEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVH 394

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           ++ GR GR       I L              ++K
Sbjct: 395 RI-GRTGRAGAQGEAISLVCVDEHGLLRDIERLIK 428


>gi|296159168|ref|ZP_06841995.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295890729|gb|EFG70520.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 491

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 128/363 (35%), Gaps = 42/363 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  QE AI  +L        M+   Q   G+GKT    + +   +              
Sbjct: 34  PTPIQEQAIPVVLAG----RDMMGAAQ--TGTGKTASFSLPIIQRLLPQASTSASPARHP 87

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q    ++ Y ++T +   ++ G +    + + L R       I+I 
Sbjct: 88  VRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRR----GVEILIA 143

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPI 431
           T     D +Q           L+L   D     G     +  L         LL +AT  
Sbjct: 144 TPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATFS 203

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T L D    ++    +    ++ ++  +   D+    ++++   G K   + 
Sbjct: 204 GEIKKLAATYLRDPQTIEVARSNSTATNVRQIVYEVAEGDKTGAVVQLIRERGLKQVIVF 263

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +    R     E        IHG  S  ++   +D+FK G  + L+AT 
Sbjct: 264 --------CNSKIGASRLARSLERDGVIATAIHGDRSQNERMQALDAFKRGEIEALVATD 315

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +   +I  +        +H++ GR GR       + L  P   K       
Sbjct: 316 VAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIEK 374

Query: 610 VLK 612
           ++K
Sbjct: 375 LIK 377


>gi|256052028|ref|XP_002569581.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|227284279|emb|CAY16829.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 840

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 75/396 (18%), Positives = 133/396 (33%), Gaps = 38/396 (9%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                + ++  + + I +     PT  Q  A+  IL           I  G  GSGKT  
Sbjct: 297 CSFAHLGLDEPLMEAIRKAGYTQPTPIQAQAVPLILAGRDV------IGIGKTGSGKTAA 350

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L  +   +          G   VI AP   LA Q Y   KK  +   + V    G    
Sbjct: 351 FLWPLIIHIMDQPELKLGDGPIGVICAPTRELALQIYSEAKKLAKVYNLTVVCAYGGGSL 410

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             ++KA E        I++ T     D ++           L+    D+    G + +++
Sbjct: 411 WEQQKACEAGCE----ILVCTPGRLIDIVKKKSTNLRRVTYLVFDEADKMFNLGFEPQVR 466

Query: 414 LTQK--ATAPHVLLMTATPIPRTLVLTSLGDIDISKIT--EKPAGRKPIKTVIIPINRID 469
                       LL +AT   R   L     +D  +I   E     + I   +   ++I+
Sbjct: 467 SIANHVRPDRQTLLFSATFKRRLERLARDILLDPVRIIQGELGEANEDITQHVEIFDKIE 526

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           +  + L   L        +   +        +   E      +     + +IHG M   D
Sbjct: 527 QKWDWLTRNLVRLTTEGSVLIFVTR------KVHSEEVAQKLKSRDLKVLLIHGDMHQSD 580

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           + +V+ +FK     +L+AT V   G+D+     +I            H++ GR GR    
Sbjct: 581 RNTVIQAFKRQEAPILVATDVASRGLDIPSIHNVINYEVARDIDTHTHRI-GRTGRAGAK 639

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            +   L+        +    ++++ E G     + L
Sbjct: 640 GTAYTLFVAGKDPVDFAAC-LVQHLESGSQKVPQRL 674


>gi|218530745|ref|YP_002421561.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218523048|gb|ACK83633.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 510

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 129/342 (37%), Gaps = 27/342 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           +PT  Q  A+   ++                G+GKT    + +   +          G +
Sbjct: 24  TPTPIQAQAVPPAMEGRD------LCGIAQTGTGKTAAFALPILHRLSLDSRRAPRRGCR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++++P   LA Q  +    Y ++      ++ G +    + +A+         I++ T 
Sbjct: 78  VLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIAP----GVDILVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    L L  V+        Q L L        ++ M      ++L  ++    
Sbjct: 134 GRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPA-KRQSLFFSATMPK 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------E 497
           +I+ + ++     P++  + P+    E +++  +    G K   +   + + K       
Sbjct: 193 NIAGLADQYL-SNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVLRDPKIERVLVF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   +R     +  +   A IHG  S   +E  + +F++G+C++L+AT +   GIDV
Sbjct: 252 TRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGIDV 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              + ++  +  +   + +H++ GR  R       I   +  
Sbjct: 312 DGVTHVVNYDLPNVPESYVHRI-GRTARAGAEGQAISFCNDE 352


>gi|148979305|ref|ZP_01815437.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145961845|gb|EDK27137.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 424

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 130/347 (37%), Gaps = 38/347 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT+ Q++ I  I+           +     GSGKTL   + +   ++ G    QA+++ 
Sbjct: 22  KPTEIQQAVIPTIVSGRDV------LALAQTGSGKTLAFGLPLLNNIDQGSNKLQALVIV 75

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E +K       I    +TG      +++ L         I I T      
Sbjct: 76  PTRELASQVTESLKPIATALSIKTVTLTGGRNADEQQQQLSTA----PQIAIATPGRLLA 131

Query: 389 SIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLMTAT--PIPRTLVLTSLG 441
            I+  +L L       +DE  R        L      P +  +TA      ++L+ ++  
Sbjct: 132 LIKSGELELAQCTSLVLDEADR--------LIDMGFWPDIQAITAALPTKRQSLLFSATL 183

Query: 442 DID-ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
             + +S+     +  K I T     N + E IE    ++++G KA  +   + +      
Sbjct: 184 PPELVSQAETLLSNPKKITTH--KENSVVEAIEETLYLVNKGSKAQALIALLNQNPWPQV 241

Query: 501 ------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +   +           S++ +HG  S  ++   +DSFKNG  ++LIAT V+  G
Sbjct: 242 LVFIGAKDNADALTKRLNKAKISVSALHGNKSQEERAQALDSFKNGDTRVLIATDVMARG 301

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           I +    I+I           +H++ GR  R       I L     +
Sbjct: 302 IHIDQLPIVINFELPPHAATYVHRV-GRTARAGSTGCAISLVSHSET 347


>gi|315928207|gb|EFV07524.1| helicase conserved C-terminal domain protein [Campylobacter jejuni
           subsp. jejuni DFVF1099]
 gi|315929756|gb|EFV08926.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni 305]
          Length = 266

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 93/273 (34%), Positives = 144/273 (52%), Gaps = 14/273 (5%)

Query: 399 IVDEQHRFGVQQRLK---LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR 455
           ++DEQHRFG  QR K   L ++  APH +  +ATPIPRTL +     ++ S I + P  +
Sbjct: 1   MIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLSMIQSELLNFSFIKQMPF-K 59

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           K I T  I      ++ E++K  +++  +   I P +    +  + S+ E+     +   
Sbjct: 60  KDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLLSASDKIPYLSL-EQAKEYWQSHY 118

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             + + HG+     K+ +++ F++    +L++TTV+EVGI +   S+I+I  AE  GLA 
Sbjct: 119 EKVFVTHGKDKQ--KDEILERFRD-EGNILLSTTVVEVGISLPRLSMIVIVGAERLGLAT 175

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL- 634
           LHQLRGRVGR    S+C L           +RL    +T DGF IAE DLK R  G++L 
Sbjct: 176 LHQLRGRVGRVGLKSACYLYTKLK---EIPSRLKEFASTLDGFKIAELDLKNRLSGDLLD 232

Query: 635 GIKQSGMPKFLIAQPELHDSLLEIARKD-AKHI 666
           G  Q G  +F        + +LE  +KD AK +
Sbjct: 233 GFMQHGN-EFKFFDFSKDEEILEKVKKDLAKKL 264


>gi|56756857|gb|AAW26600.1| SJCHGC06283 protein [Schistosoma japonicum]
          Length = 402

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 127/342 (37%), Gaps = 33/342 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA++++P
Sbjct: 52  PSAIQQRAIKQIIKGRDV------IAQAQSGTGKTATLGISILQMLDTQLRETQALVLSP 105

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I      T +      G        + L+       H+I GT     D 
Sbjct: 106 TRELASQIQKVILALGDYTNVHCHACYGGTNIGEDIRKLDYGQ----HVISGTPGRVFDM 161

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++            V+L++AT     L +TS
Sbjct: 162 IRRRSLRTRAVKLFVLDEADEMLDKGFKEQIYDVYRYLPPGTQVVLLSATMPHEILEMTS 221

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
               +  +I  K      + IK   + + R +   + L          Y      +    
Sbjct: 222 KFMTNPVRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTVTQSVIF 274

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N +  V            ++A +HG M   ++E +M  F+ G  ++LI T +   GIDV
Sbjct: 275 CNTKRKVAWLTEKMLKNNFTVASMHGDMVQKEREKIMKDFRAGDSRVLITTDLWARGIDV 334

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              S++I  +  +     +H++ GR GR       I      
Sbjct: 335 QQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKTD 375


>gi|167625498|ref|YP_001675792.1| ATP-dependent RNA helicase DbpA [Shewanella halifaxensis HAW-EB4]
 gi|167355520|gb|ABZ78133.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 469

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 89/439 (20%), Positives = 156/439 (35%), Gaps = 61/439 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           S T  Q  ++  IL           I QG  GSGKT    + +   ++      Q +++ 
Sbjct: 34  SMTPIQAQSLPAILNGEDV------IGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLC 87

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+   +    I V  + G +P   +  +LE      AHII+GT     
Sbjct: 88  PTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEH----GAHIIVGTPGRII 143

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--L 435
           D +   +L L  V        D     G Q  L   + +       LL +AT   +   +
Sbjct: 144 DHLDRGRLDLENVHTLVLDEADRMLEMGFQVELEGIMERMPIERQTLLFSATFPEQIQSI 203

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEE 494
               +    + K+    A     +      N  D +     ++L    + A   C    E
Sbjct: 204 ADKIMFKPVMVKVASSHATSTIEQHFYEVGNNNDRMRALKLLLLQYRPESAVVFCNTKRE 263

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            K+   +   + F         S+  +HG +   D++  +  F N +  +++AT V   G
Sbjct: 264 TKDVAAQLKNDGF---------SVVALHGDLEQRDRDQTLLQFANKSVSIMVATDVAARG 314

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL--- 611
           +D+     +I  +  +     +H++ GR GR     S    Y              L   
Sbjct: 315 LDIDALDAVINYHVAYDTEVHIHRI-GRTGRAGSKGSAHTFYSDEDGYKIALLEDYLERD 373

Query: 612 --------KNTEDGFLIA--EEDLKQ-------RKEGEILG--IKQSGMPKFLIAQPELH 652
                   +N  D F +      L+         + G+ILG    + G+    + + ++ 
Sbjct: 374 IVNEALPPENLLDTFPVQPVMITLQIDGGKKQKLRPGDILGALTGEDGIEGSEVGKIKIT 433

Query: 653 D--SLLEIARKDAKHILTQ 669
           D  S + + RK AK  L +
Sbjct: 434 DMRSYVAVNRKVAKKALHK 452


>gi|150008034|ref|YP_001302777.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
 gi|149936458|gb|ABR43155.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
          Length = 426

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 125/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVIM 327
           T  QE  I  IL+          I     G+GKT   ++ +   +  G        AVIM
Sbjct: 25  TPVQELTIPVILEGKD------IIACAQTGTGKTAAYVLPVINELSKGCHPTDAVNAVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LAQQ  + I+ +T     +  +           +  +R     A I+I T     
Sbjct: 79  APTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGADIVIATPGRLL 138

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT--PIPRTL 435
             I+   +        +L   D     G    +     Q       ++ +AT  P  RTL
Sbjct: 139 SHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQTIMFSATMPPKIRTL 198

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D +  KI         ++T  I  +     I +     S  ++           
Sbjct: 199 AKTILKDPEEVKIAISRPPESIMQTAYICYDPQKLKILQDLFTQSRPQRVIIF------- 251

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             S+ +  V+   S  +    ++A +H  +    +E VM  FK+G   +L+AT V+  GI
Sbjct: 252 --SSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGI 309

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           D+ D  +++  +  H     +H++ GR  RG       + +
Sbjct: 310 DINDIKLVVNFDIPHDPEDYVHRI-GRTARGTNGEGLAITF 349


>gi|329767883|ref|ZP_08259397.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341]
 gi|328838671|gb|EGF88270.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341]
          Length = 486

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 82/360 (22%), Positives = 135/360 (37%), Gaps = 37/360 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + V  +  Q +      SPT  Q   I  +L  +        + Q   GSGKT    I +
Sbjct: 7   LGVSQETVQSLRNMNFISPTGIQTETIPYVLSGID------ILAQAQTGSGKTGAFGIPL 60

Query: 315 AAAVEAGGQ--AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
              V    Q  ++I+AP   LAQQ  E ++  ++   + V I+ G      + + L++  
Sbjct: 61  VDTVRKSDQLQSLILAPTRELAQQVGEQLRLMSRAKGLKVSIVFGGTSIERQIQDLKK-- 118

Query: 373 HGQAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGVQQ--RLKLTQKATAPH 422
             +  II+GT     D I            L+L   DE    G  +  R  L++  +   
Sbjct: 119 --RPQIIVGTPGRVIDHINRRTIKLDSLTHLVLDEADEMLNMGFIEDVRFILSKITSRHQ 176

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITE-KPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            LL +AT     + L+     D   I        KP  T    I R +E +E L   L  
Sbjct: 177 TLLFSATMPKTIMELSKDFMKDYKLIKTISDEDLKPDITEYATIARENEKLETLIGFLDV 236

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
                 I           F     R + L     +       +HG ++   +  ++  FK
Sbjct: 237 QNPNLAIV----------FGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFK 286

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N + ++L+AT V   GID+ D + +   +      +  H++ GR GR  +    I   +P
Sbjct: 287 NNSLQILVATDVAARGIDISDVTHVYNFDIPQDVESYTHRI-GRTGRAGKSGVAITFLNP 345


>gi|307200175|gb|EFN80473.1| ATP-dependent RNA helicase bel [Harpegnathos saltator]
          Length = 611

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 127/351 (36%), Gaps = 48/351 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQ------- 323
            PT  Q+ AI  I+       R   +     GSGKT   L+ +   + E+G +       
Sbjct: 239 KPTPVQKYAIPIII------GRRDVMACAQTGSGKTAAFLVPILNQIYESGPRPPPPQAS 292

Query: 324 ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                     +++AP   LA Q Y+  +K+   +++   ++ G      + + L+R    
Sbjct: 293 TGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGSNIVDQMRELDR---- 348

Query: 375 QAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
             H+++ T     D +   K+ L     +++DE  R          Q         M  T
Sbjct: 349 GCHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEP--QIRRIVQQDNMPPT 406

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              +TL+ ++    +I  +  +      I   +  +    E I +  V + E  K  ++ 
Sbjct: 407 GERQTLMFSATFPKEIQILA-RDFLSNYIFLAVGRVGSTSENITQKIVWVEEHDKRSYLL 465

Query: 490 PQIEEKKESN------------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
             ++    ++             +   +            +  IHG  +  ++E  +  F
Sbjct: 466 DLLQASNFADSSAESLTLVFVETKKGADMLEEYLAQMGYPVTSIHGDRTQREREEALRRF 525

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           + G   +L+AT V   G+D+     +I  +        +H++ GR GR   
Sbjct: 526 RAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRI-GRTGRMGN 575


>gi|262381389|ref|ZP_06074527.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
 gi|262296566|gb|EEY84496.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
          Length = 408

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 125/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVIM 327
           T  QE  I  IL+          I     G+GKT   ++ +   +  G        AVIM
Sbjct: 7   TPVQELTIPVILEGKD------IIACAQTGTGKTAAYVLPVINELSKGCHPTDAVNAVIM 60

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LAQQ  + I+ +T     +  +           +  +R     A I+I T     
Sbjct: 61  APTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGADIVIATPGRLL 120

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT--PIPRTL 435
             I+   +        +L   D     G    +     Q       ++ +AT  P  RTL
Sbjct: 121 SHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQTIMFSATMPPKIRTL 180

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D +  KI         ++T  I  +     I +     S  ++           
Sbjct: 181 AKTILKDPEEVKIAISRPPESIMQTAYICYDPQKLKILQDLFTQSRPQRVIIF------- 233

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             S+ +  V+   S  +    ++A +H  +    +E VM  FK+G   +L+AT V+  GI
Sbjct: 234 --SSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGI 291

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           D+ D  +++  +  H     +H++ GR  RG       + +
Sbjct: 292 DINDIKLVVNFDIPHDPEDYVHRI-GRTARGTNGEGLAITF 331


>gi|255067653|ref|ZP_05319508.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
           29256]
 gi|255048127|gb|EET43591.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
           29256]
          Length = 457

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 126/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEGRD------IMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIET-------IVEATPTDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    +  ++   ++ E+L        K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKNPEIIEVERVDNQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|78060377|ref|YP_366952.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
 gi|77964927|gb|ABB06308.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
          Length = 481

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 70/383 (18%), Positives = 139/383 (36%), Gaps = 44/383 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+++ +  PT  Q  AI  +L           +     G+GKT    + +   +   G  
Sbjct: 16  LQDLNYQAPTPVQAKAIPAVLGGKDV------MAGAQTGTGKTAGFALPLLQRLVQHGPA 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 + +++ P   LA+Q  +    Y +   +      G +    +   L +      
Sbjct: 70  VSSNRARVLVLVPTRELAEQVLQSFIAYGKGLDLRFLAAYGGVSINPQMMKLRK----GV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +++ T     D     ++Q+ ++  +++DE  R        L          +  A P 
Sbjct: 126 DVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRM-------LDLGFARELNAVFAALPA 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  +       R P+   + P N     I++  V + +  K       
Sbjct: 179 QRQTLLFSATFSDDIRAMAATILRGPVNISVSPPNATASKIKQWVVTVDKRNKPDLFMHL 238

Query: 492 IEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           + E K  +       R+ V+   ++ +    ++  IHG      +   ++ FK G  ++L
Sbjct: 239 VAENKWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQML 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+D+ D  ++I  +        +H++ GR GR       + L     +    
Sbjct: 299 VATDVAARGLDIDDLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLA 357

Query: 606 TRLSVLKNT-----EDGFLIAEE 623
              +++K T     E GF  AE 
Sbjct: 358 AIEALIKQTLRREEEPGFE-AEH 379


>gi|294056537|ref|YP_003550195.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615870|gb|ADE56025.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 524

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 133/366 (36%), Gaps = 36/366 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           ++ + F  P+  Q   I   L           +     GSGKT    +     ++     
Sbjct: 19  IQRLGFEQPSPIQARTIPVALDG------SDIVGLSQTGSGKTAAFALPALHGLDLSNKA 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++ P   LA Q  E I + +     +  + + G  P   + +AL++      H+++
Sbjct: 73  TQVLVLCPTRELAVQVCEEIHRLSTAMPKLQALPVYGGTPIDRQIRALKK----GVHVVV 128

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATP 430
           GT     D ++   L        IL   D     G ++ +++           L  +AT 
Sbjct: 129 GTPGRVMDHMKRKTLKTDSIRLCILDEADRMLDMGFREDMEIILDAIPQERQTLFFSATM 188

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               + L+     D    +I +K    + I+ V   +    +V    +++  E  +   +
Sbjct: 189 NRGVQGLIKAFSHDAKQIEIEQKTLTVESIEQVYYEVRNRSKVEVMCRLLDMEPTQRGIV 248

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N + +VE           +   IHG +S   +E V+  F++   ++L+AT
Sbjct: 249 F--------CNTKQMVEDVCEALNARGYTADRIHGDISQGIREKVIRRFRDNAIEILVAT 300

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D  ++   +  +     +H++ GR GR       I   +    +      
Sbjct: 301 DVAARGLDIDDIELVFNYDLPYDPEDYVHRI-GRTGRAGRSGKSITFVYGRDIRRLEAIE 359

Query: 609 SVLKNT 614
             ++ +
Sbjct: 360 RYIRQS 365


>gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 486

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 73/363 (20%), Positives = 128/363 (35%), Gaps = 40/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAQAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPHASTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    ++ Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSDQLRR----GVEILI 142

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D +Q     L  V     DE  R      L   Q       +L       +TL
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQ------RILNLLPKERQTL 196

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I K+      R P    +   N     + ++   ++EG K   +   I E+
Sbjct: 197 LFSATFSGEIKKLAATYL-RNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQLIRER 255

Query: 496 K------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +    R     E        IHG  S  ++   +D+FK G  + L+AT 
Sbjct: 256 NLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRGEIEALVATD 315

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +   +I  +        +H++ GR GR       + L+ P   K       
Sbjct: 316 VAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLFSPNEKKQLADIEK 374

Query: 610 VLK 612
           ++K
Sbjct: 375 LIK 377


>gi|205277319|ref|NP_001034520.2| vasa RNA helicase [Tribolium castaneum]
 gi|270011102|gb|EFA07550.1| vasa [Tribolium castaneum]
          Length = 627

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 75/356 (21%), Positives = 131/356 (36%), Gaps = 39/356 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ AI  IL           +     GSGKT   ++ +   + +           
Sbjct: 228 KPTAIQKYAIPVILSGRD------LMSCAQTGSGKTAAFMLPIIHNLLSDKNPPNTENNC 281

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
                VIM+P   LA Q  +  KK+  N+ + V +I G     H+R        G  HI+
Sbjct: 282 AQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQR----GRILGGCHIL 337

Query: 380 IGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T    +D +      +  L   ++DE  R      L   ++  +     M AT   +T
Sbjct: 338 VATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQS--MPATGERQT 395

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    ++ ++  K      I   +  +      +E+    +S+  K   +   +E+
Sbjct: 396 LMFSATFPEEVQQLAGKFL-LNYIFIAVGIVGSACTDVEQKFFQVSKFDKRSKLVSILEK 454

Query: 495 KKESNFRSVVER-------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                    VE           L E    S +I HG     ++E  +  FK G  K+L+A
Sbjct: 455 APNERTLIFVETKRNADFLATFLSEQNIQSTSI-HGDRYQSEREKALLDFKTGHRKVLVA 513

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           T V   G+D+ D   +I  +        +H++ GR GR          +     +N
Sbjct: 514 TGVAARGLDIKDVQHVINYDLPKSIDEYVHRI-GRTGRVGNKGKATSFFDEDQDRN 568


>gi|86357796|ref|YP_469688.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
 gi|86281898|gb|ABC90961.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
          Length = 651

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 83/452 (18%), Positives = 168/452 (37%), Gaps = 60/452 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
             T  Q++ +   L           ++    GSGKT+   +A+A  +  G +        
Sbjct: 22  ELTPVQQAMLDPALA------ASDALVSAQTGSGKTVAFGLALAPTLLDGHERFGNAGAP 75

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    ++   + T  ++    G M     R+ALER     AHI++GT
Sbjct: 76  LALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRALER----GAHIVVGT 131

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I+   L        +L   DE    G ++ L+           L +A    RT
Sbjct: 132 PGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFI---------LDSAPDERRT 182

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I+K+  K   R  ++       +    IE   ++++   +   I   +  
Sbjct: 183 LMFSATVPAAIAKLA-KSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLRY 241

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            + +N       R+ V    +   +   S+  + G ++  ++   + + ++G  ++ IAT
Sbjct: 242 YEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+    ++I  +        LH+  GR GR        ++      + +   L
Sbjct: 302 DVAARGIDLPGLDLVIHADLPTNPETLLHR-SGRTGRAGRKGISAMIVPLNARRKAERLL 360

Query: 609 SVLKNTEDGFL-IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
                +       + E++ +R +  +L            A P  HD+  E  +   + +L
Sbjct: 361 ENAGISAAWARPPSAEEVNERDDERLL------------ADPIFHDAPQEEEQGLVQQLL 408

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           +      + +  +  + LY   ++     I  
Sbjct: 409 SSH---GAEKLAAAFLRLYRTNHSAPEDLIEV 437


>gi|58429986|gb|AAW78361.1| vasa RNA helicase [Tribolium castaneum]
          Length = 580

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 75/356 (21%), Positives = 131/356 (36%), Gaps = 39/356 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ AI  IL           +     GSGKT   ++ +   + +           
Sbjct: 180 KPTAIQKYAIPVILSGRD------LMSCAQTGSGKTAAFMLPIIHNLLSDKNPPNTENNC 233

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
                VIM+P   LA Q  +  KK+  N+ + V +I G     H+R        G  HI+
Sbjct: 234 AQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQR----GRILGGCHIL 289

Query: 380 IGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T    +D +      +  L   ++DE  R      L   ++  +     M AT   +T
Sbjct: 290 VATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQS--MPATGERQT 347

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    ++ ++  K      I   +  +      +E+    +S+  K   +   +E+
Sbjct: 348 LMFSATFPEEVQQLAGKFL-LNYIFIAVGIVGSACTDVEQKFFQVSKFDKRSKLVSILEK 406

Query: 495 KKESNFRSVVER-------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                    VE           L E    S +I HG     ++E  +  FK G  K+L+A
Sbjct: 407 APNERTLIFVETKRNADFLATFLSEQNIQSTSI-HGDRYQSEREKALLDFKTGHRKVLVA 465

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           T V   G+D+ D   +I  +        +H++ GR GR          +     +N
Sbjct: 466 TGVAARGLDIKDVQHVINYDLPKSIDEYVHRI-GRTGRVGNKGKATSFFDEDQDRN 520


>gi|86147794|ref|ZP_01066101.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
 gi|85834432|gb|EAQ52583.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
          Length = 412

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 137/363 (37%), Gaps = 27/363 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT+ Q++ I  I+           +     GSGKTL   + +  +++      QA+I+ 
Sbjct: 22  KPTEIQQAVIPTIIA------EKDVLALAQTGSGKTLAFGLPLLNSIKHDVNELQAIIIV 75

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + ++       I    +TG +    +++ L      +  ++I T      
Sbjct: 76  PTRELASQVAKALEPIATTLDIKTVTLTGGVDIEIQQQQLLE----KPQLVIATPGRLHA 131

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            IQ  KL L    +        RL           ++       +TL+ ++    ++   
Sbjct: 132 VIQENKLELTQC-KSLILDEADRLLDMGFWPDVQTIISALPKKHQTLLFSATLPKELISQ 190

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------RS 502
           TE      P+K      N +   IE    ++++G KA  +   + +   S        + 
Sbjct: 191 TE-ALLVNPVKVTTHQENSVVAAIEETLYLVNKGSKAQALIALLNQHAWSQVLVFIGAKD 249

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             +           S+  +HG  S  ++E  ++SFKNG  ++LIAT V+  GI +    +
Sbjct: 250 NADALTKRLSKAKISVNALHGNKSQEEREQALESFKNGKTRVLIATDVMARGIHIDQLPV 309

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK-----NSYTRLSVLKNTEDG 617
           +I  +        +H++ GR  R     S I L     +       + T   ++    +G
Sbjct: 310 VINFDLPSHSATYVHRV-GRTARAGSTGSAISLVSHSETDYLNAIRTLTNKPLMLQALEG 368

Query: 618 FLI 620
           F +
Sbjct: 369 FPV 371


>gi|330684829|gb|EGG96522.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU121]
          Length = 509

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 133/350 (38%), Gaps = 37/350 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L ++ F  PT  Q+ +I   L+          + Q   G+GKT    I +   V  E G 
Sbjct: 17  LESMGFKEPTPIQKDSIPYALEGHD------ILGQAQTGTGKTGAFGIPLIEKVVGEQGV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q++I+AP   LA Q  E +K +++   + V  + G MP   + KAL++       I++GT
Sbjct: 71  QSLILAPTRELAMQVAEQLKVFSKGQNVQVVTVFGGMPIERQIKALKK----GPQIVVGT 126

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +          + LIL   DE    G    ++                   +T
Sbjct: 127 PGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQ--------RQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I  + ++   + P     +     D  I+    ++ E +K       ++ 
Sbjct: 179 MLFSATMPKAIQTLVQQFM-KTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +      F     R + L     S       +HG ++   +  V+  FKN    +L+AT
Sbjct: 238 HQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|323335026|gb|EGA76316.1| Dbp1p [Saccharomyces cerevisiae Vin13]
          Length = 617

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 131/383 (34%), Gaps = 43/383 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ +I  + +          +     GSGKT   L  +   +   G         
Sbjct: 176 KPTPVQKYSIPIVTKGRD------LMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQ 229

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                     A+++AP   LA Q +E  +K+T  + +   ++ G  P  ++ + ++R   
Sbjct: 230 SFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDR--- 286

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  K+ L  +     DE  R          Q         M +
Sbjct: 287 -GCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEP--QIRHIVEECDMPS 343

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++   +DI  +         I   +  +    E I +  + + +  K   +
Sbjct: 344 VENRQTLMFSATFPVDIQHLARDFLD-NYIFLSVGRVGSTSENITQRILYVDDMDKKSAL 402

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +  + +         + + ++              IHG  +  ++E  + +FK    
Sbjct: 403 LDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 462

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ + + +I  +        +H++ GR GR          ++     
Sbjct: 463 DILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRI-GRTGRAGNTGVATSFFNSNNQN 521

Query: 603 NSYTRLSVLKNTEDGFLIAEEDL 625
                + +L            DL
Sbjct: 522 IVKGLMEILNEANQEVPTFLSDL 544


>gi|323306983|gb|EGA60267.1| Dbp1p [Saccharomyces cerevisiae FostersO]
          Length = 452

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 131/383 (34%), Gaps = 43/383 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ +I  + +          +     GSGKT   L  +   +   G         
Sbjct: 11  KPTPVQKYSIPIVTKGRD------LMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQ 64

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                     A+++AP   LA Q +E  +K+T  + +   ++ G  P  ++ + ++R   
Sbjct: 65  SFYSRKGYPXALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDR--- 121

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  K+ L  +     DE  R          Q         M +
Sbjct: 122 -GCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEP--QIRHIVEECDMPS 178

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++   +DI  +         I   +  +    E I +  + + +  K   +
Sbjct: 179 VENRQTLMFSATFPVDIQHLARDFLD-NYIFLSVGRVGSTSENITQRILYVDDMDKKSAL 237

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +  + +         + + ++              IHG  +  ++E  + +FK    
Sbjct: 238 LDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 297

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ + + +I  +        +H++ GR GR          ++     
Sbjct: 298 DILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRI-GRTGRAGNTGVATSFFNSNNQN 356

Query: 603 NSYTRLSVLKNTEDGFLIAEEDL 625
                + +L            DL
Sbjct: 357 IVKGLMEILNEANQEVPTFLSDL 379


>gi|323302724|gb|EGA56530.1| Dbp1p [Saccharomyces cerevisiae FostersB]
          Length = 617

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 131/383 (34%), Gaps = 43/383 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ +I  + +          +     GSGKT   L  +   +   G         
Sbjct: 176 KPTPVQKYSIPIVTKGRD------LMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQ 229

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                     A+++AP   LA Q +E  +K+T  + +   ++ G  P  ++ + ++R   
Sbjct: 230 SFYSRKGYPXALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDR--- 286

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  K+ L  +     DE  R          Q         M +
Sbjct: 287 -GCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEP--QIRHIVEECDMPS 343

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++   +DI  +         I   +  +    E I +  + + +  K   +
Sbjct: 344 VENRQTLMFSATFPVDIQHLARDFLD-NYIFLSVGRVGSTSENITQRILYVDDMDKKSAL 402

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +  + +         + + ++              IHG  +  ++E  + +FK    
Sbjct: 403 LDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 462

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ + + +I  +        +H++ GR GR          ++     
Sbjct: 463 DILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRI-GRTGRAGNTGVATSFFNSNNQN 521

Query: 603 NSYTRLSVLKNTEDGFLIAEEDL 625
                + +L            DL
Sbjct: 522 IVKGLMEILNEANQEVPTFLSDL 544


>gi|316976022|gb|EFV59375.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
          Length = 964

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 78/408 (19%), Positives = 143/408 (35%), Gaps = 56/408 (13%)

Query: 229 AYDELLAGQIALLLMRKQF--KKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDIL 285
              +    Q+  + +R +   K           +    +L+   +  PT  Q  AI  IL
Sbjct: 272 EEVDAYREQLEGIRVRGKNCPKPIKNWAQTGSSRRVMDLLKKYNYEKPTPIQAQAIPAIL 331

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------------------AV 325
                      I     GSGKTL  LI M   V                          +
Sbjct: 332 CGRDV------IGIAKTGSGKTLAFLIPMFRHVLDQPPLDDMDGPIGNERPVQYCALVTL 385

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           IM P   LA Q  +  KK+++   +    + G    + +   L+R     A II+ T   
Sbjct: 386 IMTPTRELAMQIAKECKKFSRPLNLSTVCVYGGTGISEQIAELKR----GAEIIVCTPGR 441

Query: 386 FQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D +           ++  +++DE  R           K            P  +T++ 
Sbjct: 442 MIDMLAANNGKVTNLRRVTYLVLDEADRMFDMGFEPQVLKIIGNIR------PDRQTVMF 495

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++     +  +  K    KPI+ ++   + + + +E+  +++ E  +   +   +    E
Sbjct: 496 SATFPRQMEALARK-VLEKPIEIIVGNRSTVCQDVEQHAIIVDEEHRFLKLLELLGVYYE 554

Query: 498 S----NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                 F    E  + L      +    A +HG +   D++S +  FKNG   LLIAT+V
Sbjct: 555 LGNILIFVDKQEHADELVADLMRAGYICAPLHGGLDQFDRDSTIVDFKNGVITLLIATSV 614

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+DV +  +++  +  +     +H++ GR GR            P
Sbjct: 615 AARGLDVKNMILVVNYDCPNHYEDYVHRV-GRCGRAGNKGFAYTFIQP 661


>gi|301093191|ref|XP_002997444.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans
           T30-4]
 gi|262110700|gb|EEY68752.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans
           T30-4]
          Length = 411

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 73/361 (20%), Positives = 141/361 (39%), Gaps = 43/361 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ A+K IL           I Q   G+GKT    +++   ++      QA+I+A
Sbjct: 60  KPSAIQQRAVKPILLGHD------CIAQAQSGTGKTATFAVSILQKIDINLKETQALILA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + +        + V    G        + L++      HI++GT     D
Sbjct: 114 PTRELAQQIVKVVVAIGDYMSVQVHACVGGTAVRDDIRTLQQ----GVHIVVGTPGRVGD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I    L        +L   DE    G + ++    +     V         +  + ++ 
Sbjct: 170 MINRRALRTDEVKMFVLDEADEMLSRGFKDQIYEVFRFLPEKV---------QVALFSAT 220

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKK--- 496
             +D+ ++T +   R+PI+ ++       E I++  + +     K   +C   E      
Sbjct: 221 MPLDVLEVTHRFM-REPIRILVKRDELTLEGIKQFFIAIDREEWKFDTLCDLYETLTITQ 279

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+      +    +++ +HG M   +++ +M  F++G+ ++LI T ++  
Sbjct: 280 AIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMEQRERDIIMREFRSGSSRVLITTDLLAR 339

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GIDV   S++I  +        +H++ GR GR       I      L+ N    L  ++ 
Sbjct: 340 GIDVQQVSLVINYDLPTNRENYIHRI-GRSGRFGRKGVAINF----LTHNDVRYLRDIEQ 394

Query: 614 T 614
            
Sbjct: 395 F 395


>gi|212633620|ref|YP_002310145.1| ATP-dependent RNA helicase DbpA [Shewanella piezotolerans WP3]
 gi|212555104|gb|ACJ27558.1| ATP-dependent RNA helicase DbpA [Shewanella piezotolerans WP3]
          Length = 458

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 157/446 (35%), Gaps = 62/446 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + F   T  Q  ++  IL           I Q   GSGKT    + +   ++     
Sbjct: 16  LTTMGFESMTPIQAQSLPAILNGEDV------IGQAKTGSGKTAAFGLGLLHKLDVKRFR 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q+++M P   LA Q  + I+   +    I V  + G +P   +  +LE      AHII+
Sbjct: 70  IQSLVMCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEH----GAHIIV 125

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATP 430
           GT     D +   +L L  V        D     G Q  L+    Q       LL +AT 
Sbjct: 126 GTPGRIIDHLDRGRLHLDDVHTLVLDEADRMLDMGFQVELEAIVEQVPVERQTLLFSATF 185

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYW 487
             +   +  + +    + K+          +      N  D +     ++L    + A  
Sbjct: 186 PEQIKSIADSIMFKPVLVKVASTHETSTIDQHFYEVGNNNDRMRALKLLLLQHRPESAVV 245

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C    E K+   +   + F         S+  +HG +   D++  +  F N +  +++A
Sbjct: 246 FCNTKRETKDVAAQLKNDGF---------SVVALHGDLEQRDRDQTLLQFANKSVSIMVA 296

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+     +I  +        +H++ GR GR     +    Y           
Sbjct: 297 TDVAARGLDIDALDAVINYHIAFDTEVHIHRI-GRTGRAGSKGAAHTFYSDEDGYKVALL 355

Query: 608 LSVL-----------KNTEDGF--LIAEEDLKQ-------RKEGEILG--IKQSGMPKFL 645
              L           +N  D F    +   L+         + G+ILG    + G+    
Sbjct: 356 EDYLERDIISEGLPSENLLDTFPTQPSMITLQIDGGKKQKLRPGDILGALTGEDGIEGSE 415

Query: 646 IAQPEL--HDSLLEIARKDAKHILTQ 669
           + + ++  + S + I RK AK  L +
Sbjct: 416 VGKIKITDYRSYVAINRKVAKRALHK 441


>gi|190407839|gb|EDV11104.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
          Length = 617

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 131/383 (34%), Gaps = 43/383 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ +I  + +          +     GSGKT   L  +   +   G         
Sbjct: 176 KPTPVQKYSIPIVTKGRD------LMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQ 229

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                     A+++AP   LA Q +E  +K+T  + +   ++ G  P  ++ + ++R   
Sbjct: 230 SFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDR--- 286

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  K+ L  +     DE  R          Q         M +
Sbjct: 287 -GCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEP--QIRHIVEECDMPS 343

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++   +DI  +         I   +  +    E I +  + + +  K   +
Sbjct: 344 VENRQTLMFSATFPVDIQHLARDFLD-NYIFLSVGRVGSTSENITQRILYVDDMDKKSAL 402

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +  + +         + + ++              IHG  +  ++E  + +FK    
Sbjct: 403 LDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 462

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ + + +I  +        +H++ GR GR          ++     
Sbjct: 463 DILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRI-GRTGRAGNTGVATSFFNSNNQN 521

Query: 603 NSYTRLSVLKNTEDGFLIAEEDL 625
                + +L            DL
Sbjct: 522 IVKGLMEILNEANQEVPTFLSDL 544


>gi|171315596|ref|ZP_02904831.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171099267|gb|EDT44026.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 465

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 166/450 (36%), Gaps = 49/450 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  Q +++   L           I Q   GSGKT    +A+ A ++      QA+++ P 
Sbjct: 31  TPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDTRRFDVQAMVLCPT 84

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + +++  +    + V  + G  P   + ++LE      AHI++GT     D 
Sbjct: 85  RELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH----GAHIVVGTPGRIMDH 140

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++   L L  ++        + L +        V  M  T   +TL+ ++     I+K++
Sbjct: 141 LERGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTT-RQTLLFSATYPDGIAKLS 199

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSV 503
           ++       K V +     +  I +    ++E ++ + +   +   +        N +  
Sbjct: 200 QQFLRNP--KEVKLEERHDNSKIRQRFYEVTETERLHAVGQLLNHYRPVSTIAFCNTKQQ 257

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
                 +          +HG +   +++ V+  F N +C +L+AT V   G+D+     +
Sbjct: 258 CRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAV 317

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA-- 621
           I  +        +H++ GR GR ++    + L               LK   +   +A  
Sbjct: 318 INVDVTPDPEVHVHRI-GRTGRADQEGWALSLASMDEMGRVGAIEQALKREVEWHPLAEL 376

Query: 622 -----------EEDLKQRK-------EGEILG--IKQSGMPKFLIAQP--ELHDSLLEIA 659
                       E L+           G++LG     +G     I +       + + I 
Sbjct: 377 KPAGNDTLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVTEFSTYVAIE 436

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           R  A   L +  +   ++G+ +++ L   +
Sbjct: 437 RGVAHDALRKL-NAGKIKGKRVKVRLMDEE 465


>gi|160380607|sp|A6ZWD3|DBP1_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD
           box protein 1; AltName: Full=Helicase CA1
 gi|151942679|gb|EDN61025.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
          Length = 617

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 131/383 (34%), Gaps = 43/383 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ +I  + +          +     GSGKT   L  +   +   G         
Sbjct: 176 KPTPVQKYSIPIVTKGRD------LMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQ 229

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                     A+++AP   LA Q +E  +K+T  + +   ++ G  P  ++ + ++R   
Sbjct: 230 SFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDR--- 286

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  K+ L  +     DE  R          Q         M +
Sbjct: 287 -GCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEP--QIRHIVEECDMPS 343

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++   +DI  +         I   +  +    E I +  + + +  K   +
Sbjct: 344 VENRQTLMFSATFPVDIQHLARDFLD-NYIFLSVGRVGSTSENITQRILYVDDMDKKSAL 402

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +  + +         + + ++              IHG  +  ++E  + +FK    
Sbjct: 403 LDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 462

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ + + +I  +        +H++ GR GR          ++     
Sbjct: 463 DILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRI-GRTGRAGNTGVATSFFNSNNQN 521

Query: 603 NSYTRLSVLKNTEDGFLIAEEDL 625
                + +L            DL
Sbjct: 522 IVKGLMEILNEANQEVPTFLSDL 544


>gi|170720663|ref|YP_001748351.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169758666|gb|ACA71982.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 559

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 78/392 (19%), Positives = 149/392 (38%), Gaps = 44/392 (11%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
              +++   I   +L      P+  Q  +I  IL           I Q   G+GKT    
Sbjct: 8   FAALDLNPNIVAAVLATGYEEPSAIQHQSIPIILAGHD------MIGQAQTGTGKTAAFA 61

Query: 312 IAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKA 367
           + +   ++      QA+I+AP   LA Q     + Y  Q   + V  + G  P   + +A
Sbjct: 62  LPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRA 121

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKAT 419
           +       A I++ T     D ++  +        L+L   DE  + G    L++   A 
Sbjct: 122 IRN----GAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAI 177

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
                        +T++ ++     I  I E+   R+P    I    +    I++  +++
Sbjct: 178 PA---------SRQTVLFSATLPSSIRSIAERHL-REPKHVKIQSKTQTVTAIDQAHLMV 227

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESV 533
              +K   +   +E ++     + V          +  E      A ++G ++   +E V
Sbjct: 228 HADQKIPAVLRLLEVEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERV 287

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +DS K+G   +++AT V   G+DV   + +   +  +   + +H++ GR GR       +
Sbjct: 288 IDSLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGREGRAL 346

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           LL  P         L V++    G  +AE  L
Sbjct: 347 LLVTPRE----RRMLQVIERVT-GQKVAEARL 373


>gi|40891625|gb|AAR37337.1| vasa-like protein [Crassostrea gigas]
          Length = 758

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 67/356 (18%), Positives = 125/356 (35%), Gaps = 47/356 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+ +I  +   M+ ++ M        GSGKT   L+ +   +   G         
Sbjct: 332 KPTPVQKYSIPIV---MAGRDLM---ACAQTGSGKTAAFLLPVLTGMMKNGISGSSFSEV 385

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              QA+++AP   LA Q +   +K+   T +   ++ G     ++ + +E+      HI+
Sbjct: 386 QEPQALVVAPTRELAVQIFMDARKFAHGTMLRAVVLYGGTSVGYQLRQVEQ----GTHIL 441

Query: 380 IGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKL------TQKATAPHVLL 425
           +GT     D I        +   LIL   D     G    ++       T   T    L+
Sbjct: 442 VGTPGRLIDIIGKGKISLSKLKYLILDEADRMLDMGFGPDIRKLVEELGTPPKTERQTLM 501

Query: 426 MTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     + +    L D     +         +   +  ++R ++      ++   G 
Sbjct: 502 FSATFPEEIQKMAGDFLNDYLFLTVGRVGGACTDVTQTVYEVDRQEKRSRLCDILTETGS 561

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +   +            +   +   S           IHG     ++E  +  FK G   
Sbjct: 562 EKTLVFV--------EQKRNADFLASYLSQNGFPTTSIHGDRLQAEREEALRDFKLGKAP 613

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +LIAT+V   G+D+     +I  +        +H++ GR GR   +   I  Y   
Sbjct: 614 VLIATSVAARGLDIPLVKHVINYDLPQSIDEYVHRI-GRTGRCGNLGKAISFYSND 668


>gi|3641|emb|CAA39465.1| DBP1 [Saccharomyces cerevisiae]
          Length = 618

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 131/383 (34%), Gaps = 43/383 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ +I  + +          +     GSGKT   L  +   +   G         
Sbjct: 177 KPTPVQKYSIPIVTKGRD------LMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQ 230

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                     A+++AP   LA Q +E  +K+T  + +   ++ G  P  ++ + ++R   
Sbjct: 231 SFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDR--- 287

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  K+ L  +     DE  R          Q         M +
Sbjct: 288 -GCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEP--QIRHIVEECDMPS 344

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++   +DI  +         I   +  +    E I +  + + +  K   +
Sbjct: 345 VENRQTLMFSATFPVDIQHLARDFLD-NYIFLSVGRVGSTSENITQRILYVDDMDKKSAL 403

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +  + +         + + ++              IHG  +  ++E  + +FK    
Sbjct: 404 LDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 463

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ + + +I  +        +H++ GR GR          ++     
Sbjct: 464 DILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRI-GRTGRAGNTGVATSFFNSNNQN 522

Query: 603 NSYTRLSVLKNTEDGFLIAEEDL 625
                + +L            DL
Sbjct: 523 IVKGLMEILNEANQEVPTFLSDL 545


>gi|15677233|ref|NP_274386.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|7226614|gb|AAF41742.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|308389485|gb|ADO31805.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha710]
 gi|316984178|gb|EFV63156.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
 gi|325130443|gb|EGC53205.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           OX99.30304]
 gi|325136474|gb|EGC59080.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M0579]
 gi|325140412|gb|EGC62933.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           CU385]
 gi|325200011|gb|ADY95466.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
 gi|325201923|gb|ADY97377.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240149]
 gi|325208326|gb|ADZ03778.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           NZ-05/33]
          Length = 462

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 126/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEGRD------IMASAQTGSGKTAAFLLPTLQKLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET-------IVEATPSDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    +  ++   ++ E+L        K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|6325138|ref|NP_015206.1| Dbp1p [Saccharomyces cerevisiae S288c]
 gi|1706311|sp|P24784|DBP1_YEAST RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD
           box protein 1; AltName: Full=Helicase CA1
 gi|1163095|gb|AAB68243.1| Dbp1p: putative ATP-dependent DEAD box RNA helicase [Saccharomyces
           cerevisiae]
 gi|256274187|gb|EEU09095.1| Dbp1p [Saccharomyces cerevisiae JAY291]
 gi|259150039|emb|CAY86842.1| Dbp1p [Saccharomyces cerevisiae EC1118]
 gi|285815423|tpg|DAA11315.1| TPA: Dbp1p [Saccharomyces cerevisiae S288c]
 gi|323346178|gb|EGA80468.1| Dbp1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 617

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 131/383 (34%), Gaps = 43/383 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ +I  + +          +     GSGKT   L  +   +   G         
Sbjct: 176 KPTPVQKYSIPIVTKGRD------LMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQ 229

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                     A+++AP   LA Q +E  +K+T  + +   ++ G  P  ++ + ++R   
Sbjct: 230 SFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDR--- 286

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  K+ L  +     DE  R          Q         M +
Sbjct: 287 -GCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEP--QIRHIVEECDMPS 343

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++   +DI  +         I   +  +    E I +  + + +  K   +
Sbjct: 344 VENRQTLMFSATFPVDIQHLARDFLD-NYIFLSVGRVGSTSENITQRILYVDDMDKKSAL 402

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +  + +         + + ++              IHG  +  ++E  + +FK    
Sbjct: 403 LDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 462

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ + + +I  +        +H++ GR GR          ++     
Sbjct: 463 DILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRI-GRTGRAGNTGVATSFFNSNNQN 521

Query: 603 NSYTRLSVLKNTEDGFLIAEEDL 625
                + +L            DL
Sbjct: 522 IVKGLMEILNEANQEVPTFLSDL 544


>gi|254577069|ref|XP_002494521.1| ZYRO0A03476p [Zygosaccharomyces rouxii]
 gi|238937410|emb|CAR25588.1| ZYRO0A03476p [Zygosaccharomyces rouxii]
          Length = 399

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 145/387 (37%), Gaps = 40/387 (10%)

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +K         +N++  + + I      +P+  Q  AI  I+           I Q   G
Sbjct: 17  KKLRVSPTFEAMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDV------IAQAQSG 70

Query: 304 SGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           +GKT    I M   +E      QA++++P   LA Q  + +        +    +TG   
Sbjct: 71  TGKTATFTIGMLQVLELKRKDLQALVLSPTRELASQSCQVVSNLGDYLNVKAFALTGG-- 128

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVIVDEQHRF-----GVQQ 410
               +  L+RI     H++ GT     D I+        + ++++DE         G +Q
Sbjct: 129 -KALKDDLKRIQSSGCHVVSGTPGRVLDLIKRQVVQTRNVQVLVLDEADELLSETLGFKQ 187

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RID 469
           ++                 P  + +V+++    DI ++T+K     P+K ++      ++
Sbjct: 188 QIYDIFARLP---------PGCQVVVVSATMSRDILEVTKKFM-SDPVKILVKRDEISLE 237

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHG 523
            + +    V  E  K   +C   +           N R  V+  +        ++  +HG
Sbjct: 238 GISQYYVDVSKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSKKLIQSNFAVVSMHG 297

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            M   D++ VM+ F+ G  ++LI+T V   GIDV   S++I  +        +H++ GR 
Sbjct: 298 DMKQEDRDKVMNDFRTGHSRVLISTDVWARGIDVQQISLVINYDMPEIMENYIHRI-GRS 356

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSV 610
           GR       +       S        +
Sbjct: 357 GRFGRKGVAVNFITREDSSKLKATEKM 383


>gi|307135861|gb|ADN33729.1| helicase [Cucumis melo subsp. melo]
          Length = 413

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 128/343 (37%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L +T
Sbjct: 172 MLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ D  +E L          Y      +   
Sbjct: 232 RKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTTE 386


>gi|241760530|ref|ZP_04758623.1| dead/deah box helicase [Neisseria flavescens SK114]
 gi|241319034|gb|EER55536.1| dead/deah box helicase [Neisseria flavescens SK114]
          Length = 464

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 125/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L           +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALDGRD------IMASAQTGSGKTAAFLLPTLQKLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIET-------IVEATPSDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    +  ++   ++ E+L        K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKDPETIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|163851993|ref|YP_001640036.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|240139120|ref|YP_002963595.1| RNA helicase [Methylobacterium extorquens AM1]
 gi|163663598|gb|ABY30965.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
 gi|240009092|gb|ACS40318.1| RNA helicase [Methylobacterium extorquens AM1]
          Length = 510

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 129/342 (37%), Gaps = 27/342 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           +PT  Q  A+   ++                G+GKT    + +   +          G +
Sbjct: 24  TPTPIQAQAVPPAMEGRD------LCGIAQTGTGKTAAFALPILHRLSLDSRRAPRRGCR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++++P   LA Q  +    Y ++      ++ G +    + +A+         I++ T 
Sbjct: 78  VLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIAP----GVDILVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    L L  V+        Q L L        ++ M      ++L  ++    
Sbjct: 134 GRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPA-KRQSLFFSATMPK 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------E 497
           +I+ + ++     P++  + P+    E +++  +    G K   +   + + K       
Sbjct: 193 NIAGLADQYL-SNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVLRDPKIERVLVF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   +R     +  +   A IHG  S   +E  + +F++G+C++L+AT +   GIDV
Sbjct: 252 TRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGIDV 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              + ++  +  +   + +H++ GR  R       I   +  
Sbjct: 312 DGVTHVVNYDLPNVPESYVHRI-GRTARAGAEGQAISFCNDE 352


>gi|114563615|ref|YP_751128.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334908|gb|ABI72290.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 451

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 80/364 (21%), Positives = 131/364 (35%), Gaps = 39/364 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------EAGGQA 324
           +PT  Q  A+   L           +     GSGKTL  L+     V       +   + 
Sbjct: 23  TPTDVQAQALPIALSGKD------LMASSKTGSGKTLAFLLPAMQRVISTRALSKKDPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LAQQ Y  ++    NTQ     + G      + KAL R      H I+ T  
Sbjct: 77  LILLPTRELAQQVYGQLRLLVANTQYKAISVLGGENFNDQAKALAR----DPHFIVATPG 132

Query: 385 LFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAP---HVLLMTATPIPR 433
              D +Q   L        +L   D     G   +LK    A        L+ +AT    
Sbjct: 133 RIADHLQQRHLYLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRRQTLMFSATLDHN 192

Query: 434 TL---VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           ++     T L       I E     K I+  II ++ +D     L+ +LS+      I  
Sbjct: 193 SIGDIATTLLKSPSHVSIGESYTEHKDIEQRIILVDHLDHKQAVLQHILSQETHKQVIVF 252

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     RS  +R  +L      + + + G +    +  +MD F  G  ++L+ T V
Sbjct: 253 T-------ATRSDTDRLATLLAAQGFATSALSGDLKQSARNQIMDQFARGQSQILVTTDV 305

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+++ S++I  +   F    +H++ GR GR       +    P    +       
Sbjct: 306 ASRGLDLINVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDAVSFVGPKDWDSFKKVQLF 364

Query: 611 LKNT 614
           L+  
Sbjct: 365 LRKN 368


>gi|325676644|ref|ZP_08156320.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
 gi|325552534|gb|EGD22220.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
          Length = 453

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 77/343 (22%), Positives = 128/343 (37%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q + I  +L+          +     G+GKT    I + + ++      QA+I+A
Sbjct: 37  SPSPIQAATIPTLLEGKDV------VGLAQTGTGKTAAFAIPILSRLDVDRKVPQALILA 90

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   KY+ +   + V  I G      +   L R     A II+GT     
Sbjct: 91  PTRELALQVAEAFGKYSAHIPGLQVLPIYGGQAYGVQLSGLRR----GAQIIVGTPGRVI 146

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTL 435
           D ++   L        +L   DE  + G Q  +   L        V L +AT  P  R +
Sbjct: 147 DHLEKGTLDLSNLEYLVLDEADEMLKMGFQDDVERILADTPEYKQVALFSATMPPAIRKI 206

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D     +  K A    I    + +    ++    +++  E  +A  I  +    
Sbjct: 207 SKQYLHDPVEITVKAKTATASNITQRWVQVAHQRKLDALTRILEVESFEAMIIFVRT--- 263

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   E           S A I+G +    +E  +   K+G   +L+AT V   G+
Sbjct: 264 -----KQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDVAARGL 318

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV   S ++  +  H   + +H++ GR GR       +L   P
Sbjct: 319 DVDRISHVVNYDIPHDTESYVHRI-GRTGRAGRTGDALLFVAP 360


>gi|307326471|ref|ZP_07605666.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306887879|gb|EFN18870.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 559

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 133/371 (35%), Gaps = 44/371 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + +  PT  Q  AI  +L           + Q   G+GKT    + +   +   G  
Sbjct: 25  LAGLGYEEPTPIQREAIPPLLDGRD------LLGQAATGTGKTAAFALPVLQRISQDGGG 78

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               A+++ P   LA Q  E I +Y ++    V  + G  P   + +ALER       ++
Sbjct: 79  AEPSALVLVPTRELAMQASEAIHRYGRDLGTRVLPVYGGQPIGRQLRALER----GVDVV 134

Query: 380 IGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT 429
           + T     D I    L        +L   DE    G  + +   L         +L +AT
Sbjct: 135 VATPGRALDHIGRGTLRLDSLETLVLDEADEMLDMGFAEDIDAILEGTPADRQTVLFSAT 194

Query: 430 PIPRTLVLTSLGDIDISKI---TEKPA--GRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
              R   +         +I    EKPA      ++     + R  +     +V+  E  +
Sbjct: 195 MPARIDAMARRHLRGPVRIQIEREKPAPGETPKVRQSAYVVARAQKPAALGRVLDVESPE 254

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  +  +         R  V++              +HG M    ++ VM   + GT  L
Sbjct: 255 ATIVFCRT--------RDQVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRVRGGTADL 306

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT V   G+D+   + ++  +      + +H++ GRVGR       I L  P      
Sbjct: 307 LVATDVAARGLDIEQLTHVVNYDVPSAPESYVHRI-GRVGRAGREGVAITLAEPRE---- 361

Query: 605 YTRLSVLKNTE 615
           +  L  ++ T 
Sbjct: 362 HRMLKAIERTT 372


>gi|90412948|ref|ZP_01220947.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium profundum 3TCK]
 gi|90326127|gb|EAS42561.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium profundum 3TCK]
          Length = 422

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 75/376 (19%), Positives = 143/376 (38%), Gaps = 51/376 (13%)

Query: 269 IPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---- 323
           + F +PT  QE AI  +L           +     G+GKT    + M   + A  Q    
Sbjct: 19  LGFKTPTPIQEQAIPQVLAG------DDIMAGAQTGTGKTAAFGLPMIQRLLASQQSEHD 72

Query: 324 -----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                      A+++ P   LAQQ ++ I  Y++NT I V +  G      + KAL+   
Sbjct: 73  EGYIKKPEAIRALVLTPTRELAQQVHDSILAYSKNTSIKVAVAYGGTSMGVQVKALKS-- 130

Query: 373 HGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHRFG-----VQQRLKLTQKATAPH 422
                I+I T     D      +   K+  +++DE  R       V  +  + +      
Sbjct: 131 --GVDILIATPGRLLDHAFTGTVDLSKIECLVLDEADRMLDMGFVVDIKRIMQRMPRKRQ 188

Query: 423 VLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            LL +AT   +   L    L D  + ++T +    + +  ++ P+++  +      ++ S
Sbjct: 189 TLLFSATFSNQVKKLAYDILADPKLIEVTPENIAAESVTQMVYPVDKHRKRELLSYLIGS 248

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
                  I  + ++  +       E    L      +++I +G  S   ++  +  FK G
Sbjct: 249 RNWNQVLIFTKTKQGSD-------ELAKELILDGIKAVSI-NGDKSQGARQRALSDFKEG 300

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             + ++AT V   G+D+     ++  +        +H++ GR GR     S I L    +
Sbjct: 301 KVRAMVATDVAARGLDIEQLGYVVNFDLPFQAEDYVHRI-GRTGRAGLTGSAISL----M 355

Query: 601 SKNSYTRLSVLKNTED 616
           S +    L  ++   D
Sbjct: 356 SIDEEWALRAIEELLD 371


>gi|30249980|ref|NP_842050.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
           19718]
 gi|30139087|emb|CAD85951.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
           19718]
          Length = 498

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 71/377 (18%), Positives = 138/377 (36%), Gaps = 40/377 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q   I  IL           +     G+GKT    + +   ++A            
Sbjct: 28  PTPIQAQVIPSILAGKDV------MASAQTGTGKTAGFTLPLLYRLQAYANTSVSPARHP 81

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+IMAP   LA Q  E ++KY +   +   ++ G +    +  AL+        I++ 
Sbjct: 82  VRALIMAPTRELAMQIDESVRKYGKYLALRTAVVFGGINIEPQIAALQA----GVEILVA 137

Query: 382 THALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D ++     + K  ++++DE  R      L   +       ++   +P  ++L+
Sbjct: 138 TPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIK------RVMALLSPQRQSLM 191

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I K+ +    ++P++      N ++E I  +   +    K   +   I ++ 
Sbjct: 192 FSATFSGEIRKLADS-LLKQPVRIEAAVQNTVNESISHVIHWVKPDSKFALLLHLIRQQN 250

Query: 497 ------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +        +      S   IHG  +   +   +  FK+G  ++L+AT V
Sbjct: 251 LKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHGDVQILVATDV 310

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GID+   S +I           +H++ GR GR       I L      +       +
Sbjct: 311 AARGIDIEKLSHVINYELPGNPEDYVHRI-GRTGRAGSKGKAISLVSEHEKELLANIEKL 369

Query: 611 LKNTEDGFLIAEEDLKQ 627
           L    +   IA  D +Q
Sbjct: 370 LNAKLETEQIAGFDAEQ 386


>gi|239637375|ref|ZP_04678357.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
 gi|239596975|gb|EEQ79490.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
          Length = 509

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 133/350 (38%), Gaps = 37/350 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L ++ F  PT  Q+ +I   L+          + Q   G+GKT    I +   V  E G 
Sbjct: 17  LESMGFKEPTPIQKDSIPYALEGHD------ILGQAQTGTGKTGAFGIPLIEKVVGEQGV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q++I+AP   LA Q  E +K +++   + V  + G MP   + KAL++       I++GT
Sbjct: 71  QSLILAPTRELAMQVAEQLKVFSKGQNVQVVTVFGGMPIERQIKALKK----GPQIVVGT 126

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +          + LIL   DE    G    ++                   +T
Sbjct: 127 PGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQ--------RQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I  + ++   + P     +     D  I+    ++ E +K       ++ 
Sbjct: 179 MLFSATMPKAIQTLVQQFM-KTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +      F     R + L     S       +HG ++   +  V+  FKN    +L+AT
Sbjct: 238 HQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|166713488|ref|ZP_02244695.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 460

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 133/372 (35%), Gaps = 37/372 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q+ AI  +L           +     G+GKT    + +   +    Q        
Sbjct: 23  TPTAIQQQAIPLVLAGHD------LLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPRKP 76

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+ P   LA Q ++ ++ Y++  +I   +I G +   ++   L R       ++I  
Sbjct: 77  RALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRR----GVDLLIAC 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D I+   + L  ++        + L +    +   +L        +TL+ ++  +
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFE 192

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
            +I ++      R P++  + P N + E I      +   +K   +   + +        
Sbjct: 193 ENIKQLA-LEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLV 251

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   ++     E      A IHG  S   +   +  FK G   +L+AT +   GID
Sbjct: 252 FARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +     +I  +        +H++ GR GR       I L     +K     + +L     
Sbjct: 312 IDQLPKVINYDLPMVAEDYVHRI-GRTGRNGSTGEAISLVAQDEAKLLRQIVRMLG---- 366

Query: 617 GFLIAEEDLKQR 628
                  D++ R
Sbjct: 367 ------RDVEIR 372


>gi|224153793|ref|XP_002337398.1| predicted protein [Populus trichocarpa]
 gi|222838972|gb|EEE77323.1| predicted protein [Populus trichocarpa]
          Length = 390

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 129/347 (37%), Gaps = 33/347 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 39  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 92

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 93  PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVFD 148

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L +T
Sbjct: 149 MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEIT 208

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ +  +E L          Y      +   
Sbjct: 209 RKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETL-------CDLYETLAITQSVI 261

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 262 FVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 321

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           V   S++I  +        LH++ GR GR       I        + 
Sbjct: 322 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTSDDDRM 367


>gi|187923247|ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
 gi|187714441|gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 489

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 128/367 (34%), Gaps = 42/367 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  QE AI  +L        M+   Q   G+GKT    + +   +              
Sbjct: 34  PTPIQEQAIPVVLAG----RDMMGAAQ--TGTGKTASFSLPIIQRLLPQASTSASPARHP 87

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q    ++ Y ++T +   ++ G +    + + L R       I+I 
Sbjct: 88  VRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRR----GVEILIA 143

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPI 431
           T     D +Q           L+L   D     G     +  L         LL +AT  
Sbjct: 144 TPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATFS 203

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T L +    ++    +    +  V+  +   D+    ++++   G K   + 
Sbjct: 204 GEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAVVQLIRERGLKQVIVF 263

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +    R     E        IHG  +  ++   +D+FK G  + L+AT 
Sbjct: 264 --------CNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEIEALVATD 315

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +   +I  +        +H++ GR GR       + L  P   K       
Sbjct: 316 VAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIEK 374

Query: 610 VLKNTED 616
           ++K   D
Sbjct: 375 LIKRPLD 381


>gi|310644435|ref|YP_003949194.1| dead/deah box helicase domain protein [Paenibacillus polymyxa SC2]
 gi|309249386|gb|ADO58953.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
          Length = 525

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 132/361 (36%), Gaps = 24/361 (6%)

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
            +    + VE    + +      +PT  Q+ +I  +++          I +   G+GKTL
Sbjct: 1   MKNFTALGVEQHWVEALKEQGISAPTPVQQESIPLLMEGQDV------IAEAHTGTGKTL 54

Query: 309 VALIAMAAAV---EAGGQAVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
             L+ +   +   +   QA+++AP   LA Q   E          + +  + G      +
Sbjct: 55  AFLLPILQKLNLDKRHPQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVYGGQDVERQ 114

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
            + L     G A +IIGT     D ++   L L  + +        ++           +
Sbjct: 115 LRKL----KGGAQLIIGTPGRLLDHLRRGTLDLGGI-KMLVLDEADQMLHMGFLNDVETI 169

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID--EVIERLKVVLSEG 482
           L       +T++ ++     I K+       +P+   +   + +   ++ + +      G
Sbjct: 170 LQEVPYRRQTMLFSATMPAGIRKLARVYMN-EPVDVKVKSASSVPVSQIRQVVVQTTDRG 228

Query: 483 KKAYWICPQIEEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           K+   +     ++          +    + N   +        +HG +S   +E VM +F
Sbjct: 229 KQQALVDMLNTDRPYLAVIFCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQVMKAF 288

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +    +LL+AT V   G+DV   + +   +      + +H++ GR GR       + L  
Sbjct: 289 REAKLQLLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRI-GRTGRAGGKGVAVTLAT 347

Query: 598 P 598
           P
Sbjct: 348 P 348


>gi|255713704|ref|XP_002553134.1| KLTH0D09746p [Lachancea thermotolerans]
 gi|238934514|emb|CAR22696.1| KLTH0D09746p [Lachancea thermotolerans]
          Length = 621

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 129/371 (34%), Gaps = 43/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA-AVEAGG-------- 322
            PT  Q+ ++  I        R   +     GSGKT   L  + + +   G         
Sbjct: 171 KPTPVQKYSVPIIAA------RRDLMACAQTGSGKTGGFLFPVLSESFANGPAPVPEQAS 224

Query: 323 ---------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                     AV++AP   LA Q ++  KK+T  + +   ++ G      + K L R   
Sbjct: 225 NFYIKKAFPTAVVLAPTRELATQIFDEAKKFTYRSWVRPCVVYGGADIGSQIKELNR--- 281

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  ++ L  +     DE  R          Q         M +
Sbjct: 282 -GCDLLVATPGRLSDLLERGRISLCNIKYLVLDEADRMLDMGFEP--QIRHIVEGCDMPS 338

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++   +DI  +  +   +  +   +  +    E I +  + + +  K   +
Sbjct: 339 VDERQTLMFSATFPMDIQHLA-RDFLKDYVFLSVGRVGSTSENITQHVLYVEDMDKKSAL 397

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +    +         + + +               IHG  S  ++E  + +F++G  
Sbjct: 398 LDLLAASDDGLTLIFVETKRMADALTDFLIMQNLRATAIHGDRSQSERERALAAFRSGKA 457

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+AT V   G+D+ + + +I  +  +     +H++ GR GR           +     
Sbjct: 458 SLLVATAVAARGLDIPNVTHVINYDLPNDIDDYVHRI-GRTGRAGNTGVATAFLNRGNKN 516

Query: 603 NSYTRLSVLKN 613
                + +L  
Sbjct: 517 VVKEMVDLLTE 527


>gi|254490715|ref|ZP_05103899.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010]
 gi|224464070|gb|EEF80335.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010]
          Length = 605

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 78/409 (19%), Positives = 152/409 (37%), Gaps = 41/409 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +P+  Q  +I  +L+          + Q   G+GKT    + + + +       Q +++ 
Sbjct: 32  TPSPIQAQSITPLLEGRD------LLGQAQTGTGKTAAFSLPLLSRLNDRQKTPQMLVLT 85

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E I+ Y ++ +    + I G      + + L+R       +I+GT     
Sbjct: 86  PTRELAIQVAEAIQGYGRHIKNFHVLPIYGGQSMGIQLRQLQR----NPQVIVGTPGRIL 141

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT---PIPRT 434
           D I+  KL L  +        DE  R G    +   L +      V L +AT   PI R 
Sbjct: 142 DHIRRGKLALENLQSLVLDEADEMLRMGFIDDVETILQETPKDRQVALFSATMPKPIHR- 200

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    L +     I  K +    I      +  + ++    +++  E      I  + + 
Sbjct: 201 VAQRYLNNPVEVHIKSKTSTVDTINQRYWQVTGLHKLDALTRILEVEEFDGMIIFVRTKN 260

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                    V+    L     +S + ++G M+   +E  ++  K G   +L+AT V   G
Sbjct: 261 S-------TVDLAEKLEARGYAS-SPLNGDMNQALREKTIEKMKAGKIDILVATDVAARG 312

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+   S ++  +  +   + +H++ GR GR       IL   P   +         K T
Sbjct: 313 LDIQRMSHVVNYDIPYDTESYVHRI-GRTGRAGRKGEAILFVAPRERRMLGAIEKATKQT 371

Query: 615 EDGFLI-AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
                + + ED+  R+   ++  KQ              + L+   +++
Sbjct: 372 ITRMQLPSSEDIADRR---VMSFKQQMTETIESQDLAFFEKLITSYQEE 417


>gi|74006740|ref|XP_861512.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 10 [Canis familiaris]
          Length = 640

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 130/367 (35%), Gaps = 55/367 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ AI  I +      +   +     GSGKT   L+ + + + + G          
Sbjct: 203 PTPVQKHAIPIIKE------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 256

Query: 325 -------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++AP   LA Q YE  +K++  +++   ++ G      + + LER 
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER- 315

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLM 426
                H+++ T     D ++  K+ L       +DE  R          ++        M
Sbjct: 316 ---GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT--M 370

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
               +  T++ ++    +I  +            V    +  + + ++  + L       
Sbjct: 371 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKDSLTL------- 423

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                +E KK        +       H   +   IHG  S  D+E  +  F++G   +L+
Sbjct: 424 ---VFVETKK------GADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILV 474

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ +   +I  +        +H++ GR GR   +      ++      +  
Sbjct: 475 ATAVAARGLDISNVKHVINFDLPSDIEEYVHRI-GRTGRVGNLGLATSFFNERNINITKD 533

Query: 607 RLSVLKN 613
            L +L  
Sbjct: 534 LLDLLVE 540


>gi|110638001|ref|YP_678208.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280682|gb|ABG58868.1| ATP-dependent RNA helicase (cold-shock DEAD-box protein A)
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 580

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 77/366 (21%), Positives = 133/366 (36%), Gaps = 36/366 (9%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           + +I +S  T  QE  I  ++             Q   G+GKT    I     V+     
Sbjct: 16  IESIGYSEATPIQEKTIPILMTGKDLTG------QAQTGTGKTAAFGIPAIEHVDISINQ 69

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++I+ P   LA Q    +KK ++    + V  + G      + + L+      AHI++
Sbjct: 70  TQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDLKA----GAHIVV 125

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATP 430
           GT     D +    L        IL   DE    G ++ ++L   +       +L +AT 
Sbjct: 126 GTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQTVLFSATL 185

Query: 431 IPRTLVLT--SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  L L      + +I KI  K      ++     +    +     +++     +   I
Sbjct: 186 APPILALAKRFQNNPEIIKIERKELTISTVEQFYYLVKNSQKTEIVTQIIDLNNLQLMLI 245

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
               + K E       E  + L  +  + I++ HG  +  D+  VM  F+ G   +L+AT
Sbjct: 246 FCNTKRKVE-------EVTDELKAYGHNPISL-HGDKTQRDRTEVMSKFRKGLANILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV     +I  +        +H++ GR GR  ++     L             
Sbjct: 298 DVAARGIDVTGVDAVINYDVPLDIENYVHRI-GRTGRAGQLGKSFTLVTSDEKYKLRDIE 356

Query: 609 SVLKNT 614
              K T
Sbjct: 357 RYTKAT 362


>gi|323352003|gb|EGA84542.1| Dbp1p [Saccharomyces cerevisiae VL3]
          Length = 551

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 131/383 (34%), Gaps = 43/383 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ +I  + +          +     GSGKT   L  +   +   G         
Sbjct: 110 KPTPVQKYSIPIVTKGRD------LMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQ 163

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                     A+++AP   LA Q +E  +K+T  + +   ++ G  P  ++ + ++R   
Sbjct: 164 SFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDR--- 220

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  K+ L  +     DE  R          Q         M +
Sbjct: 221 -GCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEP--QIRHIVEECDMPS 277

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++   +DI  +         I   +  +    E I +  + + +  K   +
Sbjct: 278 VENRQTLMFSATFPVDIQHLARDFLD-NYIFLSVGRVGSTSENITQRILYVDDMDKKSXL 336

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +  + +         + + ++              IHG  +  ++E  + +FK    
Sbjct: 337 LDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 396

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ + + +I  +        +H++ GR GR          ++     
Sbjct: 397 DILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRI-GRTGRAGNTGVATSFFNSNNQN 455

Query: 603 NSYTRLSVLKNTEDGFLIAEEDL 625
                + +L            DL
Sbjct: 456 IVKGLMEILNEANQEVPTFLSDL 478


>gi|126727015|ref|ZP_01742853.1| DEAD/DEAH box helicase-like protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126703687|gb|EBA02782.1| DEAD/DEAH box helicase-like protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 700

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 91/437 (20%), Positives = 164/437 (37%), Gaps = 52/437 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
           + T+ QE+  K  L D         ++    GSGKT+   +A+ +++             
Sbjct: 16  TLTQVQEAVTKPELAD------ADLLVSAQTGSGKTVGFGLAIGSSILEDDGSFAQADKP 69

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    +      T   V    G M     R+AL R     AHI++ T
Sbjct: 70  LALVIAPTRELALQVKRELDWLYGKTGAKVVSCVGGMDMRDERRALAR----GAHIVVAT 125

Query: 383 HALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
               +D I        +   ++L   DE    G ++ L+           L  A    RT
Sbjct: 126 PGRLRDHIMRNSMNMTELRAVVLDEADEMLDLGFREDLEFI---------LGEAPEERRT 176

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I+++ +         T +    +  + IE   +V+S       I   +  
Sbjct: 177 LMFSATVPKQIARLAQSYQNDAVRVTTVAESKQHSD-IEYRAMVVSARDVENAIVNVLRY 235

Query: 495 KKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +        N R++V R  +   +   S+  + G ++  ++   + + ++G  ++ IAT
Sbjct: 236 YEAPNALVFCNTRAMVNRLTTRFSNRGFSVVALSGELTQNERTHALQAMRDGRARICIAT 295

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+    ++I  +        LH+  GR GR        L+        +   L
Sbjct: 296 DVAARGIDLPGLELVIHGDLPTNSETLLHR-SGRTGRAGRKGVSALIVPSSQRSKANRLL 354

Query: 609 SVLKNTED-GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE--IARKDAKH 665
              K T D G   + +++  R +  IL       P +L A    H   +E  +A   A+ 
Sbjct: 355 GGAKVTADWGDAPSADEVFARDKERILAD-----PSWLEAAEPRHVETIEALVATYSAEQ 409

Query: 666 ILTQDPDLTSVRGQSIR 682
           I T    L +VR  +  
Sbjct: 410 IATAYMKLFAVRQSAPE 426


>gi|297571406|ref|YP_003697180.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931753|gb|ADH92561.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 620

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 82/422 (19%), Positives = 153/422 (36%), Gaps = 51/422 (12%)

Query: 268 NIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQ 323
           ++ F+ PT  QE AI  +L+          +     G+GKT    + M A V+      Q
Sbjct: 22  DLGFTSPTAIQEQAIPLLLEGRDV------LGVAQTGTGKTAAFALPMLAHVDPNNRHVQ 75

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           A+++AP   LA Q  E I  +   T  + V  + G      +  AL       A +++GT
Sbjct: 76  ALVLAPTRELALQGAEAINTFAARTGGLDVVAVYGGSAYGPQLGALRD----GAQVVVGT 131

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I    L L  +        DE  R G  + ++          +          
Sbjct: 132 PGRVMDMIDRGALDLSTIRYFVLDEADEMLRMGFAEDVEKIATGLPEERISA-------- 183

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW--ICPQI 492
            + ++     I  + E          V  P + +D + +   VV +  K      +    
Sbjct: 184 -LFSATMPKQIRMVAETHLNNPAEVQVSSPSSTVDTITQTYAVVPTRHKIGALARVLATT 242

Query: 493 EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           E      F         L    ++     A + G ++  D+E ++D  + G+  +L+AT 
Sbjct: 243 EADAALVFVRTRATAEDLAIELSTRGVQAAALSGDVAQKDREKLVDRLRQGSIDVLVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV    +++  +        +H++ GR GR     + +    P   +       
Sbjct: 303 VAARGLDVERIGLVVNFDIPREVETYVHRI-GRTGRAGREGTALSFVTPKEKQRLRRIEK 361

Query: 610 VLKNTEDGFLI---AEED-LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI---ARKD 662
           V +       +   AE   L+ RK   +L      + +  + +  ++D L+     A++D
Sbjct: 362 VTRTQMTQVELPTPAEVSGLRARK---LLAEA---VERHAVGRLHVYDDLIAEFIAAQED 415

Query: 663 AK 664
           A+
Sbjct: 416 AQ 417


>gi|260584701|ref|ZP_05852447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
 gi|260157724|gb|EEW92794.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
          Length = 509

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 124/350 (35%), Gaps = 35/350 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           +  + F   T  Q   I   L           I Q   G+GKT    + M   +      
Sbjct: 16  IEKMGFEEATPIQSQTIPLALAGKDV------IGQAQTGTGKTASFGLPMLQKINLRNRK 69

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++AP   LA Q  E + +  ++ +I V+ + G      + + L+     Q HI++G
Sbjct: 70  VQGLVIAPTRELAIQTQEELYRLGKDKKIHVQAVYGGADIGRQIRQLKD----QPHIVVG 125

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-- 429
           T     D I    L L  +        DE    G  + +   +         LL +AT  
Sbjct: 126 TPGRLLDHISRKTLRLDNIETLVLDEADEMLNMGFLEDIESIIKLVPENRQTLLFSATMP 185

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              + + +  + + +  +I         I    +     ++     +++  +  +   + 
Sbjct: 186 DDIKRIGVQFMKEPEHVRIKSSEMTATLIDQYFVKCKDFEKFDIMTRLLDVQTPELTIVF 245

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +  V+      E        IHG +S   + SV+  FKN    +L+AT 
Sbjct: 246 GRT--------KRRVDELARGLEMRGFRAEGIHGDLSQQKRMSVLRDFKNNHLDILVATD 297

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   G+D+   + +   +      + +H++ GR GR  +    +    P 
Sbjct: 298 VAARGLDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGQEGMSVTFVTPN 346


>gi|229514398|ref|ZP_04403859.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|229348378|gb|EEO13336.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
          Length = 416

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 144/366 (39%), Gaps = 35/366 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 32  EPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 85

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  E + +      +    + G + +  ++ AL        +I++ T     D 
Sbjct: 86  TRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALAE----NPNILVATTGRLFDL 141

Query: 389 ---SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               ++  ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 142 TQSGLRLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTAGVRQTVMCSATFSDD 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 195 LKLKAQQLMRVPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 254

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S  ++E+ +  FKNG+ ++LIAT ++  GI +  
Sbjct: 255 AKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATDLLARGIHIEQ 314

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPLS----KNSYTRLSVLKNT 614
             ++I           +H++ GR  R  +    + L+ H  +       + T+  +    
Sbjct: 315 LPVVINFELPMHAETYVHRV-GRTARAGQQGIALSLVCHGEMDALNAIRTLTQRQLPVQN 373

Query: 615 EDGFLI 620
            DGF +
Sbjct: 374 LDGFPV 379


>gi|255565933|ref|XP_002523955.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223536802|gb|EEF38442.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 564

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 131/371 (35%), Gaps = 33/371 (8%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q  A+   L           +   + GSGKT    I M     A        G  A
Sbjct: 144 PTPIQVQAMTVSLSGRD------LLACAETGSGKTAAFTIPMIQHCLAQSPIRRGDGPLA 197

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++AP   LAQQ  + +K ++++       I+ G    A +R  L         I++ T 
Sbjct: 198 LVLAPTRELAQQIEKEVKCFSRSLDSFRTAIVVGGTNIADQRSELRA----GVDIMVATP 253

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
             F D +Q           ++L   D     G   Q R  L         LL +AT    
Sbjct: 254 GRFIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVLHNLPERHQTLLFSATMPEE 313

Query: 434 --TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA-YWICP 490
             TL    L      K+ +       +  V+  ++  +++   L +++ +  +A     P
Sbjct: 314 IETLAQEYLTTPVQVKVGKVSGLTANVSQVLKKVSESEKIDCLLGLLVEDASQAERADHP 373

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   + ++  +               +HG  S  ++E+ +  F++G+  +L+AT V
Sbjct: 374 FPLTVVFVDRKARCDEVAEALVAQGLRAVALHGGRSQNEREAALHDFRSGSTDILVATDV 433

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV   + +I  +        +H++ GR GR          Y              
Sbjct: 434 ASRGLDVTGVTHVINLDLPKTMEDYVHRV-GRTGRAGSAGQATSFYTDRDLFLVAQIKKA 492

Query: 611 LKNTEDGFLIA 621
           + + + G  +A
Sbjct: 493 IADVKSGNTVA 503


>gi|85859652|ref|YP_461854.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
 gi|85722743|gb|ABC77686.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
          Length = 413

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 131/369 (35%), Gaps = 43/369 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           L  + F  PT  Q  +I  I++          +     G+GKT    I +   +      
Sbjct: 16  LAQLGFRRPTDIQFKSIPSIMKGEDV------LAIAQTGTGKTAAFAIPLIDRIHREKSS 69

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G + +++ P   LA Q  E      ++T++    + G + Q  + + L+       
Sbjct: 70  KRVFGIKCIVLVPTRELAMQIGEVFAGLAKHTRVKTFPLIGGVEQDEQIRKLQD----GI 125

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            I+I T     D I            L+L   D     G  + +K  ++           
Sbjct: 126 DILIATPGRMFDLIHQGHIRLDRIETLVLDEADHMLDLGFIEDIKFVKRMLHKK------ 179

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL  ++  + +I K+         I+  I P + +   +    + +    K +++
Sbjct: 180 ---HQTLFFSATINPEIKKLAFSQVKGTAIRIQISPEDPVSANVTHAVMFVEMDDKRFFL 236

Query: 489 CPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              ++E +ES        R   ER     E        IHG     ++ SVM  FK G C
Sbjct: 237 ERFLKENQESKVIVFVRTRIRAERVARAMERVGLHSLTIHGEKDQAERTSVMRKFKEGEC 296

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LLIAT V   GID+ D + +I  +        +H++ GR GRG+     +         
Sbjct: 297 NLLIATDVSARGIDIPDVNYVINYDLPEKAENYVHRV-GRTGRGDNKGIALSFCSSDEKM 355

Query: 603 NSYTRLSVL 611
                   L
Sbjct: 356 RLQEIQQFL 364


>gi|306829117|ref|ZP_07462307.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
           6249]
 gi|304428203|gb|EFM31293.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
           6249]
          Length = 525

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 134/363 (36%), Gaps = 34/363 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYY--------KLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +           LIL   DE    G        +++   +   LL +AT     + + + 
Sbjct: 135 KRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPESRQTLLFSATMPEAIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  KI  K    + +    I +   ++     +++  E  +   +  +       
Sbjct: 195 FMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+ 
Sbjct: 249 --KRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    I    P          ++ K    G 
Sbjct: 307 GVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGL 365

Query: 619 LIA 621
             A
Sbjct: 366 KPA 368


>gi|293391610|ref|ZP_06635944.1| preprotein translocase subunit SecF [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952144|gb|EFE02263.1| preprotein translocase subunit SecF [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 595

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 155/423 (36%), Gaps = 49/423 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+  I  +L+          +     GSGKT    + + A +   E   
Sbjct: 17  SDLGFETPSPIQQICIPHLLEGRDV------LGMAQTGSGKTAAFALPILAKIDPNEKHP 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  +++ +    I +  + G      R     R     A +++G
Sbjct: 71  QLLVMAPTRELAIQVADACEQFMKYAKGINIVTLYGG----QRYDIQLRALKQGAQVVVG 126

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I+   L        +L   DE  R G  + ++        H          +
Sbjct: 127 TPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEH---------HQ 177

Query: 434 TLVLTSLGDIDISKITEKPA-GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           T + ++     I +IT++     + IK      +  D       V       A     ++
Sbjct: 178 TALFSATMPEPIRRITKRFMKDPQEIKIKATQQSAPDIAQSCWYVHGFRKNDALLRFLEV 237

Query: 493 EEKKESNFRSVVER----FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           E+   +   +  +        L E      A ++G M+   +E  +D  ++G+  +++AT
Sbjct: 238 EDFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIVVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+   S+++  +      + +H++ GR GR       +L   P   +      
Sbjct: 298 DVAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNVE 356

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGI-KQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            ++K   +   +           E+L   ++      +  Q E HD  LE+ R+  + + 
Sbjct: 357 HLIKKNIEEVELPNH--------EVLQACRRKKFKDKITTQLEHHD--LELYRELLEDMF 406

Query: 668 TQD 670
           T D
Sbjct: 407 TAD 409


>gi|332289496|ref|YP_004420348.1| ATP-dependent RNA helicase DeaD [Gallibacterium anatis UMN179]
 gi|330432392|gb|AEC17451.1| ATP-dependent RNA helicase DeaD [Gallibacterium anatis UMN179]
          Length = 590

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 158/423 (37%), Gaps = 47/423 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           + ++ F +P+  Q++ I  +L           +     GSGKT    + + + ++     
Sbjct: 16  ISDLGFINPSPIQQACIPHLLNGEDV------LGMAQTGSGKTAAFALPLLSKIDLDKKY 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q ++MAP   LA Q  +  +++ +N   I +  + G      R     R     A +++
Sbjct: 70  PQLLVMAPTRELAIQVADACEQFAKNLKGINIVTVYGG----QRYDIQLRALKQGAQVVV 125

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT- 429
           GT     D I+   L        +L   DE  R G  + ++  + +   +    L +AT 
Sbjct: 126 GTPGRILDHIRRKTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPESHQTALFSATM 185

Query: 430 --PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             PI R          +I KI         I      +N   +    ++ +  E   A  
Sbjct: 186 PEPIRRITRRFMREPQEI-KIQSTQQTAPDITQSYWFVNGFKKSEALVRFLEVEEFDAAI 244

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +  +         ++       L E      A ++G M+   +E  +D  +NG   +++A
Sbjct: 245 VFTRT--------KTGTTEVTDLLERNGFRCAALNGDMTQQLREQTLDKLRNGRLDIVVA 296

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+   S+++  +      + +H++ GR GR       +L       +     
Sbjct: 297 TDVAARGIDIDRISLVVNYDIPLDPESYVHRI-GRTGRAGRAGRALLFVEAREKRLLRNI 355

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
             ++K T D   I   +       ++  +++    + + AQ E HD  L+  R   + I 
Sbjct: 356 ERLMKKTVDEVQIPNHE-------QLQQVRRDKFRQRITAQLEHHD--LDQYRSLLEDIF 406

Query: 668 TQD 670
             D
Sbjct: 407 AAD 409


>gi|298695355|gb|ADI98577.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 487

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 131/343 (38%), Gaps = 36/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQAVIMAP 329
            PT  Q+ +I   LQ +        + Q   G+GKT    I +   V  + G Q++I+AP
Sbjct: 5   EPTPIQKDSIPYALQGID------ILGQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAP 58

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E ++++++   + V  + G MP   + KAL++       I++GT     D 
Sbjct: 59  TRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK----GPQIVVGTPGRVIDH 114

Query: 390 IQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           +          + LIL   DE    G    ++                   +T++ ++  
Sbjct: 115 LNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ--------RQTMLFSATM 166

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ES 498
              I  + ++   + P     +     D  IE    ++ E +K       ++  +     
Sbjct: 167 PKAIQALVQQFM-KSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAI 225

Query: 499 NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F     R + L     S       +HG ++   +  V+  FKN    +L+AT V   G+
Sbjct: 226 VFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGL 285

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 286 DISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 327


>gi|238894460|ref|YP_002919194.1| ATP-dependent RNA helicase DbpA [Klebsiella pneumoniae NTUH-K2044]
 gi|238546776|dbj|BAH63127.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 457

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 81/453 (17%), Positives = 172/453 (37%), Gaps = 48/453 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + S T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LNELGYLSMTPVQAAALPAILGRKDVR------VQAKTGSGKTAAFGLGLLQHIDPARFE 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++     LA Q    +++  +    I + ++ G  P   +R +L+       HII+
Sbjct: 72  TQSLVLCTTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  + +        R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-QTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P    I  ++ +   IE+    +S   K   +   + + +    
Sbjct: 187 WPAAIAAISGR-VQRNPQTIEIDTVDALP-AIEQQFFEVSRHGKIALLQRLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+   ++++           +H++ GR  R  E    I    P  ++ +     +L+ +
Sbjct: 305 LDIKSLALVVNFELAWDPEVHVHRI-GRTARAGEQGLAISFCAPEEAQRATILADMLQLS 363

Query: 615 ED------GFLIAEEDLKQ------------RKEGEILG--IKQSGMPKFLIAQPELHDS 654
            +      G  IA    +              + G++LG      G     I +  +H +
Sbjct: 364 LNWLPAPTGNTIAPLTAEMATLCIDGGKKAKMRPGDVLGALTGDMGFDGADIGKITVHPA 423

Query: 655 --LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
              + I +  A+    Q  +   ++G+S R+ L
Sbjct: 424 HVYVAIRQNMAQKAYKQLQN-GKIKGKSCRVRL 455


>gi|196016401|ref|XP_002118053.1| hypothetical protein TRIADDRAFT_33552 [Trichoplax adhaerens]
 gi|190579356|gb|EDV19453.1| hypothetical protein TRIADDRAFT_33552 [Trichoplax adhaerens]
          Length = 524

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 133/370 (35%), Gaps = 43/370 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------- 323
           PT  Q+ AI  I        +   +     GSGKT   LI + + +  GG          
Sbjct: 129 PTPVQKYAISII------TGKRDLMACAQTGSGKTAAFLIPILSLIFNGGPVVKPQSYYG 182

Query: 324 --------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                   A+I+AP   LA Q YE  KK+T        ++ G     ++ K L+R     
Sbjct: 183 SRRKQFPLALILAPTRELAAQIYEEAKKFTYRAVARPCVVYGGADFGYQVKDLDR----G 238

Query: 376 AHIIIGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
            H+++ T     D ++   + L      ++DE  R          ++      +  +   
Sbjct: 239 CHLLVATPGRLVDMLERGMIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPSGQ- 297

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +T++ ++    +I  +         I   +  +    E I +  V + E  K  ++  
Sbjct: 298 -RQTMMFSATFPKEIQVLARDFLD-DYIFLAVGRVGSTSENIIQKMVWVEEDDKRAYLLE 355

Query: 491 QIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            +   + +         +   +               IHG  S  D+E  + +F+ G   
Sbjct: 356 LLNSTEPTSLSLVFVETKKGADSLQEFLVRMGYYSTAIHGDRSQRDREDALRAFRAGVRP 415

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+D+ + + +I  +        +H++ GR GR   + +    ++      
Sbjct: 416 ILVATAVAARGLDIPNVAHVINFDLPSDIEEYVHRI-GRTGRVGNVGTATSFFNEKNKNV 474

Query: 604 SYTRLSVLKN 613
           +   + +L  
Sbjct: 475 AKDLVDLLLE 484


>gi|58580393|ref|YP_199409.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58424987|gb|AAW74024.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 484

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 133/372 (35%), Gaps = 37/372 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q+ AI  +L           +     G+GKT    + +   +    Q        
Sbjct: 47  TPTAIQQQAIPLVLAGHD------LLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPRKP 100

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+ P   LA Q ++ ++ Y++  +I   +I G +   ++   L R       ++I  
Sbjct: 101 RALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRR----GVDLLIAC 156

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D I+   + L  ++        + L +    +   +L        +TL+ ++  +
Sbjct: 157 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFE 216

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
            +I ++      R P++  + P N + E I      +   +K   +   + +        
Sbjct: 217 ENIKQLA-LEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLV 275

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   ++     E      A IHG  S   +   +  FK G   +L+AT +   GID
Sbjct: 276 FARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGID 335

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +     +I  +        +H++ GR GR       I L     +K     + +L     
Sbjct: 336 IDQLPKVINYDLPMVAEDYVHRI-GRTGRNGSTGEAISLVAQDEAKLLRQIVRMLG---- 390

Query: 617 GFLIAEEDLKQR 628
                  D++ R
Sbjct: 391 ------RDVEIR 396


>gi|320583801|gb|EFW98014.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Pichia angusta DL-1]
          Length = 396

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 76/343 (22%), Positives = 129/343 (37%), Gaps = 37/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P+  Q  AI  ++Q          I Q   G+GKT    I M   V+      QA++++
Sbjct: 45  APSAIQSRAIAQVIQGRDV------IAQAQSGTGKTATFTIGMLQVVDTSKFETQALVLS 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
               LA Q    I       +I      G        +AL +      HI+ GT     D
Sbjct: 99  TTRELAAQIRSVISALGDYMKIRCHACVGGKSVGEDIRALSKGQ----HIVSGTPGRVLD 154

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G Q ++    +    +  V++++AT     L LT
Sbjct: 155 MIKRRTLSIRNVKMLVLDEADELLGKGFQDQISEIYQYLPPSTQVVVVSATLPKAVLSLT 214

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           +    D  KI  K      + I    I + + D   + L  +       +A   C     
Sbjct: 215 NKFMSDPVKILVKRDELTLEGINQYYIQVEKEDWKFDTLCDLYDSLTITQAVIFCNT--- 271

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+  +        +++ +HG M   +++ VMD F+ G  ++LI+T +   G
Sbjct: 272 ------KKKVDWLSESLRKANFTVSSMHGDMQQDERDRVMDEFRLGNSRVLISTDIWARG 325

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           IDV   S++I  +  +     +H++ GR GR       I    
Sbjct: 326 IDVQQVSLVINYDLPYDKENYVHRI-GRSGRFGRKGVAINFVT 367


>gi|58038681|ref|YP_190645.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58001095|gb|AAW59989.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 431

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 122/347 (35%), Gaps = 37/347 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           +PT  Q  AI  +L+          +     G+GKT    + +   +          G +
Sbjct: 24  TPTPIQAGAIPYLLEGRD------LLGLAQTGTGKTAAFALPILNHIFTNRRPAPPKGVR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LA Q  E    Y ++ +    ++ G + Q  + +   R       +++   
Sbjct: 78  ALVLAPTRELASQIGESFAAYARHMKFSYAVVFGGVGQGRQIETTRR----GVDVLVAAP 133

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D      I    L ++++DE  R      ++  Q       ++       +TL+ +
Sbjct: 134 GRLLDLIGQKHIDLSTLEILVLDEADRMLDMGFVRDIQ------RIMALLPKQRQTLLFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     IS +      + P    + P +   + I +  + +  G K       +E    +
Sbjct: 188 ATMPPSISDLAHS-LLKNPATVQVTPESSTVDRINQAVMFVDSGSKKDAALMLLESPSVA 246

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +    +              IHG  S   +E  M  F++G  K L+AT +  
Sbjct: 247 RAVVFTLMKHEANKVAEFLNKNGIRAEAIHGNKSQGARERAMAGFRSGAIKALVATDIAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            GIDV + S +   +  +   + +H++ GR  R       + L    
Sbjct: 307 RGIDVDEVSHVFNYDLPNVPESYVHRI-GRTARAGREGCAVSLCDAE 352


>gi|67900874|ref|XP_680693.1| hypothetical protein AN7424.2 [Aspergillus nidulans FGSC A4]
 gi|74656963|sp|Q5AWA6|DBP3_EMENI RecName: Full=ATP-dependent RNA helicase dbp3
 gi|40742814|gb|EAA62004.1| hypothetical protein AN7424.2 [Aspergillus nidulans FGSC A4]
          Length = 498

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 85/396 (21%), Positives = 150/396 (37%), Gaps = 53/396 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           SPT  Q +    +            I   + GSGKTL   +     V             
Sbjct: 95  SPTAIQSATWPLLFAGRDV------IGIAETGSGKTLAFGLPCLKKVLDLKTKQKSCRPL 148

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AV+++P   LA Q Y+ + K+ +   I V  I G + +  +R+AL+      A +++ T 
Sbjct: 149 AVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALK-----SAAVVVATP 203

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLT---QKATAPHVLLMTAT--P 430
              +D     S+   ++  +++DE  R    G +Q +K        +    ++ TAT  P
Sbjct: 204 GRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPP 263

Query: 431 IPRTLVLTSLGDIDISKITEKPAGR-------KPIKTVIIPINRIDEVIERLKVVLSEGK 483
           I R L  T +       I   P+         K +  V+ P  +   +++ L      G 
Sbjct: 264 IVRNLASTFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRH-QRGT 322

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +   + +K+         R   L       +A IHG +S  ++   +++FK+G   
Sbjct: 323 PDKVLAFCLYKKEAM-------RVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAAT 375

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+D+    +++           +H++ GR GR       I L+       
Sbjct: 376 VLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRI-GRTGRAGADGHAITLFTETDKAQ 434

Query: 604 SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
           S   ++VLK        A       K G  +  KQ 
Sbjct: 435 SGALINVLKAANQEVPEA-----LLKFGSTVKKKQH 465


>gi|328873234|gb|EGG21601.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 418

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 77/350 (22%), Positives = 132/350 (37%), Gaps = 34/350 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           +    F  P+  Q+ AI  I++          I Q   G+GKT    I    +V+     
Sbjct: 59  IYGFGFEKPSAIQQRAIVPIIKGRDT------IAQAQSGTGKTATFSIGALQSVDVSIKN 112

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +I++P   LAQQ  + +        + V    G    +   + LE+      HI  G
Sbjct: 113 PQVIILSPTRELAQQIQKVVMALGGFMSVQVHSFVGQKTISEDVRRLEQ----GVHIASG 168

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPI 431
           T     D I    L        IL   DE    G QQ++         A  ++L++AT  
Sbjct: 169 TPGRVIDLISRKALNTRQIKMLILDEADEMLSLGFQQQINDVYRYLPPATQIVLVSATLT 228

Query: 432 PRTLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              + +T     D  +I         + IK   + + +     E     L +   +  I 
Sbjct: 229 QDVVSMTERFMTDPVRILLKRDELTLEGIKQFFVSVEKE----EWKFGTLCDIYDSLTIT 284

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +      N +S V+   +       ++A +HG M   ++E ++ SF++G  ++LI T 
Sbjct: 285 QAV---IFCNTKSKVDALTNKMREANFTVASLHGDMDQKEREEIIRSFRSGENRVLITTD 341

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           ++  GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 342 ILARGIDVQQVSLVINYDLPMDRENYIHRI-GRSGRFGRKGVAINFVKSS 390


>gi|218780301|ref|YP_002431619.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761685|gb|ACL04151.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 430

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 128/349 (36%), Gaps = 22/349 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----GGQAVIM 327
           +PT  QE AI  ++Q       ++ + Q   G+GKT   ++ +   +      G +A+I+
Sbjct: 23  TPTPIQEKAIPQVMQG----RDLMGLAQ--TGTGKTAAFVLPILHRLMQKPGNGVRALII 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA+Q +E I     +T +    + G +    + K L+     Q+ I++       
Sbjct: 77  APTRELAEQTHEAINTLGAHTNLKSVSVYGGVNLQRQVKQLK-----QSDIVVACPGRLL 131

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D I    + L  V+        Q   +        +L        +TL+ ++     I +
Sbjct: 132 DHIGRKNVDLSRVEMLVLDEADQMFDMGFLPDIRKILTFLPRKGRQTLMFSATMPAQIKR 191

Query: 448 IT-EKPAGRKPIKT-VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +  E       ++   + P + +      +   L        +     E      R+   
Sbjct: 192 LAGEVLHNHVLVQIGHVAPADTVKHAFYPVAQHLKTALLLQLLGSTGTESVLVFTRTKY- 250

Query: 506 RFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           +   L    T    S A + G +S   +   M+ FK+G  ++L+AT +   GIDV + S 
Sbjct: 251 KAKQLGNKLTKAGFSSASLQGNLSQSRRVDAMNGFKSGKYQVLVATDIAARGIDVANVSH 310

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           +I  +        +H++ GR GR +              +        +
Sbjct: 311 VINYDMPSTPETYMHRI-GRTGRAKRRGEAFTFITNDDRQMVRAVNRAV 358


>gi|159030016|emb|CAO90397.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 479

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 73/367 (19%), Positives = 139/367 (37%), Gaps = 40/367 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + F+ PT+ Q  AI  +L+     + M+ + Q   G+GKT    + +   ++     
Sbjct: 18  LETLGFTTPTEIQTKAIPLLLEG----HDMVGMSQ--TGTGKTAAYSLPLLERMDTKNPN 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LAQQ    IK ++ + ++ +  + G      + ++LE+       I++G
Sbjct: 72  VQALILTPTRELAQQVASAIKDFSDDRRLFILTVCGGQSMERQIRSLEK----GVQIVVG 127

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D +   KL        +L   DE    G    +K            + A+P  R
Sbjct: 128 TPGRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVKKI----------LQASPSTR 177

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
                S       +       + PI   +         IE+   ++  G     +   + 
Sbjct: 178 QTACFSATMPREIRDLIANFLKSPISVTVSQPQAAPAKIEQKIYMIPRGWTKLKVLQPLL 237

Query: 494 EKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E +           +       S  +    ++   HG +S + +E ++  F+ G  KL++
Sbjct: 238 EIEPLESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT +   G+DV + S +I  +        +H++ GR GR  +  + I L  P   +    
Sbjct: 298 ATDIAARGLDVENLSHVINYDLPDNAETYIHRI-GRTGRAGKTGTAISLVEPIDRRLLRQ 356

Query: 607 RLSVLKN 613
               L+ 
Sbjct: 357 IEQRLRQ 363


>gi|149377730|ref|ZP_01895465.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
 gi|149358015|gb|EDM46502.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
          Length = 503

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 79/426 (18%), Positives = 155/426 (36%), Gaps = 45/426 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q   I  +L           +     G+GKT    + + + ++A     Q +++A
Sbjct: 26  KPSPIQAQTIPALLAGK------HLLGVAQTGTGKTAAFALPLLSRIDASVMAPQILVLA 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E    Y    +    + I G      + K L R     A +I+GT     
Sbjct: 80  PTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFFPQIKGLRR----GAQVIVGTPGRML 135

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--L 435
           D ++           L+L   DE  R G    +   L +        L +AT  P+   +
Sbjct: 136 DHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPDNCQRALFSATMPPQIKKV 195

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D    KI  +    + I   ++P+    ++    +++  E      I  +    
Sbjct: 196 AQTYLRDATEVKIESETRTVERISQFVLPVYAERKLDALTRILEVEPVDGTIIFVRT--- 252

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++              ++A ++G ++   +E  ++  K G   +++AT V   G+
Sbjct: 253 -----KAETTLLAEKLSARGHAVAPLNGDLNQRQREQTVEDLKRGKKDIIVATDVAARGL 307

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   + +I  +  +   A +H++ GR GR       ILL  P       T      +  
Sbjct: 308 DVPRITHVINYDVPYDTEAYIHRV-GRTGRAGREGKAILLVTPRERSWLRTLERATNSPM 366

Query: 616 DGFLI----AEEDL-KQRKEGEILGIKQSGMPKFLIAQPEL-----HDSLLEIARKDAKH 665
           + + +    A + + +++ E ++LG  + G     +A  +         +  +A   A +
Sbjct: 367 ESYELPSPNALKKMREEQFESQLLGFAEDGKLGKAMALLDEIAERNDMDIAMVAGALACY 426

Query: 666 ILTQDP 671
           +    P
Sbjct: 427 LEASQP 432


>gi|90577494|ref|ZP_01233305.1| putative ATP-dependent RNA helicase RhlE [Vibrio angustum S14]
 gi|90440580|gb|EAS65760.1| putative ATP-dependent RNA helicase RhlE [Vibrio angustum S14]
          Length = 497

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 144/371 (38%), Gaps = 41/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
            P+  QE AI  IL           +     G+GKT    + +   +  G        +A
Sbjct: 23  KPSPIQEQAIPAILAGKDV------MAAAQTGTGKTAGFTLPLLERLANGRPARSNHVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +  Y +N ++   ++ G +    +   + R+  G A +++ T  
Sbjct: 77  LVLTPTRELAAQVGESVATYGKNLRLSSAVVFGGVKVNPQ---MLRMRKG-ADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  + ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLHSQNAVKFRDVEILVLDEADRMLDMGFIRDIRK-------ILALLPKERQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N+    +++    + + KK   +   + E+    
Sbjct: 186 ATFSDEIRELAKGLVNNPVEIDVNPRNQTARTVKQWICPVDQKKKPNLLTKLLNERNWKQ 245

Query: 500 FRSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                +     N L  H  S     A IHG  S   +   + +FK+G  ++L+AT +   
Sbjct: 246 VLVFTKTKHGANKLATHLESRGVSAAAIHGNKSQGARTKALANFKSGDVRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++  +  H     +H++ GR GR   +   I L     +K+      + + 
Sbjct: 306 GLDIDQLPQVVNFDLPHVAEDYVHRI-GRTGRAGCVGEAISLVSAEEAKDLAAIERLTQQ 364

Query: 614 TED-----GFL 619
             D     GF 
Sbjct: 365 VFDREIIEGFK 375


>gi|325188272|emb|CCA22812.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 470

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 75/344 (21%), Positives = 125/344 (36%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ A+K IL           I Q   G+GKT    +++   +       QA+I+A
Sbjct: 119 KPSAIQQRAVKPILLGHD------CIAQAQSGTGKTATFTVSILQKININLKETQALILA 172

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + I        I V    G          L++      HI++GT     D
Sbjct: 173 PTRELAQQIVKVIAAIGDYMSINVHACVGGTAVRDDIHTLQQ----GVHIVVGTPGRVGD 228

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
            I    L        +L   DE    G Q ++         +  V L +AT     L +T
Sbjct: 229 MINQGALRTEAVKMFVLDEADEMLSRGFQDQIYDVFRFLPESVQVALFSATMPQEVLEVT 288

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIE--RLKVVLSEGKKAYWICPQIEE 494
                D  +I  K      + IK   + I R +   +            +A   C     
Sbjct: 289 QKFMRDPIRIMVKRDELTLEGIKQFFVAIEREEWKFDTLCDLYETLTITQAIIYCNT--- 345

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R  V+      +    +++ +HG M    ++ +M  F++G+ ++LI T ++  G
Sbjct: 346 ------RRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVLITTDLLARG 399

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           IDV   S+++  +        +H++ GR GR       I     
Sbjct: 400 IDVQQVSLVVNYDLPLNRENYIHRI-GRSGRFGRKGVAINFLTE 442


>gi|294676409|ref|YP_003577024.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
 gi|294475229|gb|ADE84617.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
          Length = 548

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 71/385 (18%), Positives = 144/385 (37%), Gaps = 54/385 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+          +     G+GKT    + M   + +G       +++
Sbjct: 24  TPTPIQAGAIPPALEGRDV------LGIAQTGTGKTASFTLPMVTMLSSGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y + T++   ++ G +    + K ++R       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYAKYTRLTKALLIGGVSFGEQDKLIDR----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTL 435
             D  +  KL+L     ++VDE  R      +   ++           L  +AT  P   
Sbjct: 134 LLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFQLTPFTRQTLFFSATMAPEIE 193

Query: 436 VLTSLGDIDISKI------------TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +T+      ++I            T+K     P +       + + +   +K       
Sbjct: 194 RITNTFLHAPARIEVARQATTSETITQKLIQITPPRRDQSAKAKRELLRAIIKSEGEACT 253

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            A   C +         ++ V+      +    + A IHG +    +   +D+F++G+ +
Sbjct: 254 NAIIFCNR---------KTDVDIVAKSLKTHGFNAAPIHGDLDQSLRTKTLDAFRDGSLQ 304

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LLIA+ V   G+D+   S +   +        +H++ GR GR   + +   +  P  +K 
Sbjct: 305 LLIASDVAARGLDIPAVSHVFNYDLPSHAEDYVHRI-GRTGRAGRLGTAYSIGTPADAKY 363

Query: 604 SYTRLSVLKNTE------DGFLIAE 622
                +++K         +GF ++E
Sbjct: 364 LAAIEALVKQEIPRADPPEGFSLSE 388


>gi|256840789|ref|ZP_05546297.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|298376614|ref|ZP_06986569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|301309869|ref|ZP_07215808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
 gi|256738061|gb|EEU51387.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|298266492|gb|EFI08150.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|300831443|gb|EFK62074.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
          Length = 426

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 125/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVIM 327
           T  QE  I  IL+          I     G+GKT   ++ +   +  G        AVIM
Sbjct: 25  TPVQELTIPVILEGKD------IIACAQTGTGKTAAYVLPVINELSKGCHPTDAVNAVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LAQQ  + I+ +T     +  +           +  +R     A I+I T     
Sbjct: 79  APTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGADIVIATPGRLL 138

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT--PIPRTL 435
             I+   +        +L   D     G    +     Q       ++ +AT  P  RTL
Sbjct: 139 SHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQTIMFSATMPPKIRTL 198

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D +  KI         ++T  I  +     I +     S  ++           
Sbjct: 199 AKTILKDPEEVKIAISRPPESIMQTAYICYDPQKLKILQDLFTQSRPQRVIIF------- 251

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             S+ +  V+   S  +    ++A +H  +    +E VM  FK+G   +L+AT V+  GI
Sbjct: 252 --SSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGI 309

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           D+ D  +++  +  H     +H++ GR  RG       + +
Sbjct: 310 DINDIKLVVNFDIPHDPEDYVHRI-GRTARGTNGEGLAITF 349


>gi|317477042|ref|ZP_07936284.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906835|gb|EFV28547.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 428

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 128/357 (35%), Gaps = 33/357 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE +I  IL+          I     G+GKT   L+ +   +  GG        ++M
Sbjct: 25  TPIQEQSIPVILEGRD------LIAVAQTGTGKTAAYLLPVLNKLSEGGHPEDSINCIVM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LAQQ  + ++ ++    +    + G        +    +  G A ++I T     
Sbjct: 79  APTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKRGLTLG-ADVVIATPGRLI 137

Query: 388 DS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                  +   ++   I+DE  R      L +        ++        +T++ ++   
Sbjct: 138 AHLSLGYVDLSRVSYFILDEADRM-----LDMGFYDDIMQIVKFL-PKERQTIMFSATMP 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
             I ++ +          V + +++  E I +   V  E +K   I     E+       
Sbjct: 192 AKIQQLAKSILNNPAE--VKLAVSKPAEKIVQAAYVCYENQKLGIIHSLFAEQTPERVII 249

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +    ++  +H  +    +E VM  FK G   +L+AT ++  GID
Sbjct: 250 FASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGID 309

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + D  ++I  +  H     +H++ GR  R       +   +     N     + L+ 
Sbjct: 310 IDDIRLVINYDVPHDSEDYVHRI-GRTARANNDGVALTFVNEKEQTNFKGIENFLEK 365


>gi|255072433|ref|XP_002499891.1| predicted protein [Micromonas sp. RCC299]
 gi|226515153|gb|ACO61149.1| predicted protein [Micromonas sp. RCC299]
          Length = 394

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 132/371 (35%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ AI  I            I Q   G+GKT +  +A+   ++      QA++++
Sbjct: 43  KPSAIQQRAIVPITSGRDV------IAQAQSGTGKTSMISLALCQMLDTNTREVQALVLS 96

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  +          + V    G        + L        HI+ GT     D
Sbjct: 97  PTRELATQTEKTALALGNFMSVQVHACIGGRSIGEDIRKL----DHGVHIVSGTPGRVFD 152

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        IL   DE    G ++++            V+L++AT     L +T
Sbjct: 153 MIKRRNLRTRNIKALILDEADEMLNKGFKEQIYDVYRYLPPETQVVLVSATLPQEVLEMT 212

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           +    D  +I  K      + IK   + + + +   + L  +       +A   C     
Sbjct: 213 TKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT--- 269

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+           +++ +HG M   +++++M  F+ GT ++LI T V   G
Sbjct: 270 ------KRKVDWLTDKMRQNNFTVSSMHGDMPQKERDAIMGEFRGGTTRVLITTDVWARG 323

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV   S++I  +  +     +H++ GR GR       I        +            
Sbjct: 324 IDVQQVSLVINYDLPNNRENYIHRI-GRSGRYGRKGVAINFVKADDVRILRDIEQYYSTQ 382

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 383 IDEMPMNVADL 393


>gi|159037848|ref|YP_001537101.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157916683|gb|ABV98110.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 574

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 122/347 (35%), Gaps = 39/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-----AVI 326
            PT  Q  AI  +L           + Q   G+GKT    + +   +          A++
Sbjct: 38  EPTPIQREAIPPLLAGRD------LLGQAATGTGKTAAFALPLLQRMSVDRPTGDPVALV 91

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   +Y +     V  I G  P   + +AL+        +++ T    
Sbjct: 92  LVPTRELAVQVSEAFHRYGKELGTRVLPIYGGQPIGRQLRALDS----GVDVVVATPGRA 147

Query: 387 QDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLV 436
            D I    L L  V        DE    G  + +   L         +L +AT   R   
Sbjct: 148 LDHIARGTLRLGDVGTVVLDEADEMLDMGFAEDIEAILEHAPEQRQTVLFSATMPARIDG 207

Query: 437 LTSLGDIDISKI----TEKPAGRKP-IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           +      D  +I     +  AG  P ++     + R  +     +V+  E   A  +  +
Sbjct: 208 MARAHLTDPIRILIAREQPVAGEAPRVRQSAYLVARAHKPAALGRVLDIESPTAAIVFCR 267

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    R  V+R              +HG MS   ++ VM   + GT  LL+AT V 
Sbjct: 268 --------SREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLMATDVA 319

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             G+DV   S ++  +      + +H++ GRVGR       I L  P
Sbjct: 320 ARGLDVEQLSHVVNYDVPSAPESYVHRI-GRVGRAGREGVAITLAEP 365


>gi|41055130|ref|NP_957372.1| eukaryotic initiation factor 4A-III [Danio rerio]
 gi|82209617|sp|Q7ZVA6|IF4A3_DANRE RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|28277876|gb|AAH45939.1| Eukaryotic translation initiation factor 4A, isoform 3 [Danio
           rerio]
 gi|182892106|gb|AAI65833.1| Eif4a3 protein [Danio rerio]
          Length = 406

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 135/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    +++   ++      QA+I+A
Sbjct: 55  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFCVSVLQCLDIQVRETQALILA 108

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 109 PTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 164

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V L++AT     L +T
Sbjct: 165 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMT 224

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 225 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 277

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 278 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 337

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 338 VSQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 396

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 397 EMPMNVADL 405


>gi|324106744|gb|ADX41681.2| vasa [Cynoglossus semilaevis]
          Length = 722

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 122/353 (34%), Gaps = 36/353 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   +  GG         
Sbjct: 301 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILHQLMIGGASSSFFSEL 354

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q +   +K+   T +   ++ G +   H+   L +  +    ++
Sbjct: 355 QEPKAIIVAPTRELINQIFLEARKFAYGTVVRPVVVYGGVSIRHQVSDLNKGCN----VL 410

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I+  K+ L      ++DE  R                    M +    +T
Sbjct: 411 CGTPGRLMDMIERGKVGLSKVQYFVLDEADRMLDMGFEP--DMRRLVASPGMPSREGRQT 468

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    +I K+         +   +  +      +E+  + + +  K   +   ++ 
Sbjct: 469 LMFSATFPEEIQKLAADFLKPDYLFLAVGIVGGACSDVEQTFIEVGKFSKREQLLDLVKT 528

Query: 495 KKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +           IHG      +E  +  FK G C +L+AT
Sbjct: 529 CGNERTIVFVEKKRQADFIATFLCQENVPTTSIHGDREQWQREQALADFKYGKCPVLVAT 588

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           +V   G+D+ D   ++  +        +H++ GR GR   +   +  +   + 
Sbjct: 589 SVAARGLDIPDVQHVVNFDLPGSIDEYVHRI-GRTGRCGNVGRAVSFFDTDVD 640


>gi|148239434|ref|YP_001224821.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
 gi|147847973|emb|CAK23524.1| Putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
          Length = 399

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 135/370 (36%), Gaps = 41/370 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------V 325
           P+  Q  AI  ++           +     G+GKT    + +   +  G +A       +
Sbjct: 12  PSPIQAQAIPAVIDGRDV------MAAAQTGTGKTAGFTLPVLERLRHGKRAGRAQIRAL 65

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E +K Y+++  +  +++ G +    +   L     G   +++ T   
Sbjct: 66  VLTPTRELAAQVLENVKAYSRHLPLRSDVVFGGVKANPQIDRLR----GGVDLLVATPGR 121

Query: 386 FQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D     ++++ +L  +++DE  R      +           L+       +TL+ ++ 
Sbjct: 122 LLDLHQQGALRFDQLECLVLDEADRMLDMGFIHDI------RRLIRLMPAKRQTLLFSAT 175

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
               I K+        P+   + P N+    +E++       +K+  +   I   +    
Sbjct: 176 FSAPIRKLAS-GLLHDPVHLQVTPENQTARSVEQVVHPCDMARKSDLLSHLIRTGEWRQV 234

Query: 500 -----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +    R          + A IHG  S   +   +  FK G+ ++L+AT +   G
Sbjct: 235 LVFSRTKHGANRVADRLNKEGLAAAAIHGNKSQGARTRALQGFKQGSVRVLVATDIAARG 294

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-----LSKNSYTRLS 609
           ID+     ++  +  +     +H++ GR GR  E    + L          +    T   
Sbjct: 295 IDIQQLPHVVNLDLPNVAEDYVHRI-GRTGRAGETGHAVSLVAAEEALLLKAIERLTGEE 353

Query: 610 VLKNTEDGFL 619
           + + T DGF 
Sbjct: 354 LTRQTVDGFE 363


>gi|115359843|ref|YP_776981.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria AMMD]
 gi|115285131|gb|ABI90647.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria AMMD]
          Length = 465

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 165/450 (36%), Gaps = 49/450 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  Q +++   L           I Q   GSGKT    +A+ A ++      QA+++ P 
Sbjct: 31  TPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDTRRFDVQAMVLCPT 84

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + +++  +    + V  + G  P   + ++LE      AHI++GT     D 
Sbjct: 85  RELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH----GAHIVVGTPGRIMDH 140

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +    L L  ++        + L +        V  M  T   +TL+ ++     I+K++
Sbjct: 141 LDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTT-RQTLLFSATYPDGIAKLS 199

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSV 503
           ++       K V +     +  I +    ++E ++ + +   +   +        N +  
Sbjct: 200 QQFLRNP--KEVKLEERHDNSKIRQRFYEVAETERLHAVGQLLNHYRPVSTIAFCNTKQQ 257

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
                 +          +HG +   +++ V+  F N +C +L+AT V   G+D+     +
Sbjct: 258 CRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAV 317

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA-- 621
           I  +        +H++ GR GR ++    + L               LK   +   +A  
Sbjct: 318 INVDVTPDPEVHVHRI-GRTGRADQEGWALSLASMDEMGRVGAIEQALKREVEWHPLAEL 376

Query: 622 -----------EEDLKQRK-------EGEILG--IKQSGMPKFLIAQP--ELHDSLLEIA 659
                       E L+           G++LG     +G     I +       + + I 
Sbjct: 377 KPAGNDTLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVTEFSTYVAIE 436

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           R  A   L +  +   ++G+ +++ L   +
Sbjct: 437 RGVAHDALRKL-NAGKIKGKRVKVRLMDEE 465


>gi|242241488|ref|ZP_04795933.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
 gi|242235031|gb|EES37342.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
          Length = 528

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 140/372 (37%), Gaps = 36/372 (9%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +++   +    + +  K  Q +       PT  Q+ +I   L+          + Q   
Sbjct: 14  RKRRIILQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEG------DDILGQAQT 67

Query: 303 GSGKTLVALIAMAAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           G+GKT    I +   V  + G Q++I+AP   LA Q  E ++++++  ++ V  + G MP
Sbjct: 68  GTGKTGAFGIPLIEKVVGQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMP 127

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL 412
              + KAL+R       I++GT     D +          + LIL   DE    G    +
Sbjct: 128 IERQIKALKR----GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDM 183

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
           +                   +T++ ++     I ++ ++      I    +     D  I
Sbjct: 184 RFIMDKIPAEQ--------RQTMLFSATMPKAIQELVQQFMKAPKI-IKTMNNEMSDPQI 234

Query: 473 ERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           +    ++ E +K       ++  +      F     R + L     S       +HG ++
Sbjct: 235 DEYYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDIT 294

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              +  V+  FKN    +L+AT V   G+D+   S +   +      +  H++ GR GR 
Sbjct: 295 QAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRA 353

Query: 587 EEISSCILLYHP 598
            +    +   +P
Sbjct: 354 GKEGIAVTFVNP 365


>gi|220904989|ref|YP_002480301.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869288|gb|ACL49623.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 595

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 134/358 (37%), Gaps = 37/358 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQAVIMAP 329
            P+  Q  A+  +L             Q   G+GKT    + +   +  E   QA+I+ P
Sbjct: 25  EPSPIQVLAVPCLLAG------NDAFGQAQTGTGKTAAFGLPILDKLTPERNTQALILCP 78

Query: 330 IGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q  E + K   +   + +  I G  P   + +AL +       +++GT     D
Sbjct: 79  TRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQLRALAK----GVQVVVGTPGRVMD 134

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT--PIPRTLV 436
            ++   L        +L   DE    G ++ +   L Q   +   +L +AT  P  R L 
Sbjct: 135 HLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTPASCQRVLFSATVPPAIRELS 194

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              L + ++  + +K      I+ +   +    ++    +++ S       +        
Sbjct: 195 KRFLREPEMLTVAQKMLTVPAIEQIYYEVRPHQKMDALCRLLDSRAFHKALVF------- 247

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            S  R   E    L +    S   +HG ++   ++ VM  F+     +L+AT V   G+D
Sbjct: 248 CSTKRGADEVTTHLQQRGYQS-DSLHGNLAQSQRDRVMQRFRAEGLDVLVATDVAARGLD 306

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           V D   +I  +  H     +H++ GR GR   + S          +  Y    +++ T
Sbjct: 307 VDDVDAVINYDIPHDVEKYVHRI-GRTGRAGRVGSAFTFVTM---REHYKMRDIIRCT 360


>gi|237681149|ref|NP_001153721.1| ATP-dependent RNA helicase belle [Tribolium castaneum]
 gi|270008148|gb|EFA04596.1| belle [Tribolium castaneum]
          Length = 699

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 125/359 (34%), Gaps = 46/359 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q+ AI  I+       +   +     GSGKT   L+ +   +   G         
Sbjct: 237 TPTPVQKYAIPIIV------GKRDVMACAQTGSGKTAAFLVPILNQMYEHGPPNITHGRS 290

Query: 324 -------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                   +++AP   LA Q Y+  KK+   +++   ++ G      + + L+R      
Sbjct: 291 RRKQYPLGLVLAPTRELATQIYDESKKFAYRSRVRPCVVYGGAHIGDQMRDLDR----GC 346

Query: 377 HIIIGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           H+++ T     D I   ++ L      ++DE  R          Q         M  T  
Sbjct: 347 HLLVATPGRLLDMIDRGRIGLDYCRYLVLDEADRMLDMGFE--LQIRRIVEKETMPKTGE 404

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            +TL+ ++     I  +         I   +  +    E I +  V + E  K  ++   
Sbjct: 405 RQTLMFSATFPSPIQMLARDFLD-NYIFLAVGRVGSTSENITQKVVWVEEHDKRSFLLDL 463

Query: 492 IEEKKESNF------------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +   + S              +   +            +  IHG  S  ++E  +  F++
Sbjct: 464 LNAAEMSQPSAESLTLVFVETKKGADSLEEFLHFEGYPVTSIHGDRSQREREDALRQFRS 523

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G   +L+AT V   G+D+     +I  +        +H++ GR GR   +      ++ 
Sbjct: 524 GNTPILVATAVAARGLDIPHVKHVINFDLPSDIEEYVHRI-GRTGRMGNLGLATSFFND 581


>gi|330448478|ref|ZP_08312126.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492669|dbj|GAA06623.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 494

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 144/371 (38%), Gaps = 41/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
            P+  QE AI  IL+          +     G+GKT    + +   +  G        +A
Sbjct: 23  KPSPIQEKAIPAILEGKDV------MAAAQTGTGKTAGFTLPLLERLAGGCPARSNHVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +  Y +N +I   ++ G +    +   + R+  G A +++ T  
Sbjct: 77  LVLTPTRELAAQVGESVATYGKNLRISSAVVFGGVKVNPQ---MLRMRKG-ADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  + ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLHSQNAVKFRDIEILVLDEADRMLDMGFIRDIRK-------ILALLPKERQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N+    +++    + + KK   +   + E+    
Sbjct: 186 ATFSDEIRELAKGLVNDPVEIDVNPRNQTARTVKQWICPVDKKKKPNLLTKLLSERNWKQ 245

Query: 500 FRSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                +     N L  H  S     A IHG  S   +   + +FK G  ++L+AT +   
Sbjct: 246 VLVFTKTKHGANKLSAHLESRGITAAAIHGNKSQGARTKALANFKAGEIRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-----LSKNSYTRL 608
           G+D+     ++  +  H     +H++ GR GR       I L         ++    T+ 
Sbjct: 306 GLDIDQLPQVVNFDLPHVAEDYVHRI-GRTGRAGCEGEAISLVSADEFKELVAIERLTQQ 364

Query: 609 SVLKNTEDGFL 619
            + +   DGF 
Sbjct: 365 VLEREIVDGFK 375


>gi|224285398|gb|ACN40422.1| unknown [Picea sitchensis]
          Length = 428

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 126/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+  I    Q +        I Q   G+GKT      +   +       QA+++A
Sbjct: 60  KPSAIQQRGIVPFCQGLDV------IQQAQSGTGKTATFCSGILQQLNYNVPECQALVLA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++      Q+ V    G        + L+       H+++GT     D
Sbjct: 114 PTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQA----GVHVVVGTPGRVYD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   T   V + +AT  P  L +T
Sbjct: 170 MLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPTNLQVGVFSATMPPEALEIT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                +  +I  K      + IK   + + R D  ++ L          Y      +   
Sbjct: 230 RKFMTNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTL-------CDLYETLAITQSVI 282

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 283 FINTRRKVDWLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 342

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 343 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTKD 384


>gi|159125976|gb|EDP51092.1| inositol 5-phosphatase, putative [Aspergillus fumigatus A1163]
          Length = 429

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 56  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVVRETQALVLS 109

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + L+       H++ GT     D
Sbjct: 110 PTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQ----HVVSGTPGRVAD 165

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 166 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 216

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E I++  + +  E  K   +C   +      
Sbjct: 217 LPYDVLDMTTKFMT-DPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQ 275

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 276 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 335

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 336 GIDVQQVSLVINYDLPTNRENYIHRI-GRSGRFGRKGVAINFVTSD 380


>gi|145614688|ref|XP_361928.2| hypothetical protein MGG_11403 [Magnaporthe oryzae 70-15]
 gi|152032666|sp|A4RN46|PRP5_MAGO7 RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|145021588|gb|EDK05717.1| hypothetical protein MGG_11403 [Magnaporthe oryzae 70-15]
          Length = 1012

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 67/385 (17%), Positives = 138/385 (35%), Gaps = 46/385 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  A+  I+           +     GSGKT+  L+ M   ++         G  
Sbjct: 400 KPTAIQMQALPVIMSGRDV------VGVAKTGSGKTMAFLLPMFRHIKDQEPVKDNEGPI 453

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   LA Q +   K + +   +      G  P   +   L+R     A I++ T 
Sbjct: 454 GLILTPTRELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADLKR----GAEIVVATT 509

Query: 384 ALFQDS--------IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D         +   +   +++DE  R           K      +     P  +T+
Sbjct: 510 GRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMK------IFANVRPDRQTV 563

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     +  + +K   + P++  +   + +   I ++  +  E  K   +   + E 
Sbjct: 564 LFSATMPKIMDALVKK-VLKNPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLELLGEL 622

Query: 496 KESNFR-------SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            + +            E+ + L             +HG    +D++S +  FK+G C ++
Sbjct: 623 YKDDDDVRSLIFVERQEKADELLRELLRKGYGCMSLHGGKDQVDRDSTISDFKSGVCPVM 682

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           IAT+V   G+DV    +++  +A +     +H+  GR GR     + +          + 
Sbjct: 683 IATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTFVTEEQENCAI 741

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKE 630
                L+    G  + E+ ++ RK 
Sbjct: 742 GIAKALEQ--SGQPVPEKLIEMRKA 764


>gi|325188274|emb|CCA22814.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 414

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 75/344 (21%), Positives = 125/344 (36%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ A+K IL           I Q   G+GKT    +++   +       QA+I+A
Sbjct: 63  KPSAIQQRAVKPILLGHD------CIAQAQSGTGKTATFTVSILQKININLKETQALILA 116

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + I        I V    G          L++      HI++GT     D
Sbjct: 117 PTRELAQQIVKVIAAIGDYMSINVHACVGGTAVRDDIHTLQQ----GVHIVVGTPGRVGD 172

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
            I    L        +L   DE    G Q ++         +  V L +AT     L +T
Sbjct: 173 MINQGALRTEAVKMFVLDEADEMLSRGFQDQIYDVFRFLPESVQVALFSATMPQEVLEVT 232

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIE--RLKVVLSEGKKAYWICPQIEE 494
                D  +I  K      + IK   + I R +   +            +A   C     
Sbjct: 233 QKFMRDPIRIMVKRDELTLEGIKQFFVAIEREEWKFDTLCDLYETLTITQAIIYCNT--- 289

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R  V+      +    +++ +HG M    ++ +M  F++G+ ++LI T ++  G
Sbjct: 290 ------RRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVLITTDLLARG 343

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           IDV   S+++  +        +H++ GR GR       I     
Sbjct: 344 IDVQQVSLVVNYDLPLNRENYIHRI-GRSGRFGRKGVAINFLTE 386


>gi|302875685|ref|YP_003844318.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689114|ref|ZP_07631560.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302578542|gb|ADL52554.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 472

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 128/359 (35%), Gaps = 42/359 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           PT+ QE  I   L           I++   GSGKT    I +   +   E   QA+++ P
Sbjct: 25  PTEVQEKVIPLALSG------DDIIVKAQTGSGKTAAFAIPIIENLIANENAVQALVLTP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E         +I    + G  P + ++  L +    + HI++GT     D 
Sbjct: 79  TRELAVQVQETFSTLGVYKKIKTVAVYGKQPMSIQKNQLSQ----RVHIVVGTPGRTLDH 134

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           I+   L +  V        DE    G    ++           +     + +TL+ ++  
Sbjct: 135 IEKGNLDISSVKYLIIDEADEMLNMGFIDEVENI---------IKKVPKLRQTLMFSATL 185

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
             +I ++  K     P    + P       I +    + E  K   +   I+ +      
Sbjct: 186 SYEIKELINKYM-FSPKLIELTPETLTVAKINQKYYEIDENLKYNLLEDLIKTEDITKAI 244

Query: 497 -ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +  V    S     + S+  IHG M   D+ S + +FK    + ++AT V   GI
Sbjct: 245 LFCRTKKNVAYLASRMRVSSYSVTEIHGDMLQNDRLSALKAFKEDKFQFIVATDVAARGI 304

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           DV + S +   +      A +H++ GR GR       I       ++     L  ++  
Sbjct: 305 DVNNVSHVFNYDIPLELEAYVHRI-GRTGRAGSSGEAITFV----TRYEDKFLKAIEEF 358


>gi|126664485|ref|ZP_01735469.1| DNA and RNA helicase [Marinobacter sp. ELB17]
 gi|126630811|gb|EBA01425.1| DNA and RNA helicase [Marinobacter sp. ELB17]
          Length = 444

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 59/346 (17%), Positives = 124/346 (35%), Gaps = 37/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------GGQAV 325
           +P+  Q  AI  +L           +     G+GKT   ++ +   +E       G + +
Sbjct: 23  TPSPIQLKAIPAVLAGKDV------MAAAQTGTGKTAGFVLPILQMLEQNPRTGKGPRVL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q ++ +  Y++       ++ G +    +   L +       +++ T   
Sbjct: 77  ILTPTRELAAQVHDSVNLYSRYVPTRAAVVFGGVKINPQMMKLRK----GLDVLVATPGR 132

Query: 386 FQD-----SIQYYKLILVIVDEQHRFGV-----QQRLKLTQKATAPHVLLMTAT--PIPR 433
             D     ++++ ++  +++DE  R          R  L         LL +AT     R
Sbjct: 133 LMDLYQQNAVRFNEVEFLVLDEADRMLDMGFIRDIRKILAMLPAKRQSLLFSATFSNEIR 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL    L D     +  +    + +   + P+++  +     K+V     +   +  +  
Sbjct: 193 TLAKGLLNDPVQIDVAVRNTTAESVIQSVYPVDQSQKTALLSKLVRDNSWEQVLVFTRT- 251

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R          + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 252 -------KHGANRLTEKLGKDGITAAAIHGNKSQGARTRALAEFKQGDIRVLVATDIAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+     ++     +     +H++ GR GR  E    + L    
Sbjct: 305 GLDIKQLPQVVNFELPNVPEDYVHRI-GRTGRAGESGHALSLVSAD 349


>gi|3775989|emb|CAA09197.1| RNA helicase [Arabidopsis thaliana]
          Length = 411

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 134/370 (36%), Gaps = 46/370 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
            P+  Q      +L           I     GSGKTL   I     V             
Sbjct: 10  KPSPIQSHTWPFLLDGRD------LIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKK 63

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
                ++++P   LA Q  + +++  +   +    + G   +  +  A+         I+
Sbjct: 64  VNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRS----GVDIV 119

Query: 380 IGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           IGT    +D I+   L L  V     DE  R        L      P   +++ T   R 
Sbjct: 120 IGTPGRLRDLIESNVLRLSDVSFVVLDEADRM-------LDMGFEEPVRFILSNTNKVRQ 172

Query: 435 LVL-TSLGDIDISKITEKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWICPQ 491
           +V+ ++   +D+ K+ ++     PIK +I  ++     +V++ ++V+    +    I   
Sbjct: 173 MVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALL 232

Query: 492 IEEKKESNFRS--------VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            +  K    R           ER     +        IHG  +  ++   +  FK G+C 
Sbjct: 233 EKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCP 292

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LL+AT V   G+D+ D  ++I           +H++ GR GR  +       + P     
Sbjct: 293 LLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRI-GRTGRAGKKGVAHTFFTPLNKGL 351

Query: 604 SYTRLSVLKN 613
           +   ++VL+ 
Sbjct: 352 AGELVNVLRE 361


>gi|332535929|ref|ZP_08411636.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034692|gb|EGI71243.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 422

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 153/392 (39%), Gaps = 51/392 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA--VEAGG 322
           L ++ ++ PT  Q  AI  IL           I   + GSGKT    + M     +E G 
Sbjct: 23  LSDLEYTQPTPIQAQAIPSILTG------SDLIAGANTGSGKTATFALPMLQKAFLELGA 76

Query: 323 Q----------AVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALER 370
           +           +I+ P   LA Q  + +K Y+ N    I    + G +    + +AL  
Sbjct: 77  KSTTSKGNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQALR- 135

Query: 371 IAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
              G A II+ T     D     +I+  K+  +++DE  R        L+   T     L
Sbjct: 136 ---GGADIIVATPGRLLDLISSNAIKLDKVTTLVLDEADRM-------LSLGFTEELADL 185

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           +   P  +  +L S    +  K+  +     P++  +   N+ +  + +    +++G+K 
Sbjct: 186 LALMPAKKQTMLFSATFPEQVKLLTQELLNDPVEIQV--QNKDESTLVQRVFTVNKGEKT 243

Query: 486 YWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +   I+  K        N +   E   +  E    +  + HG     ++  V++ FK 
Sbjct: 244 TVLAHLIKTHKWRQVLIFVNAKKDCEHLAAKLEKRGVNAQVFHGDKGQSERTRVIEKFKA 303

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL---- 595
           G  ++LIAT +   G+D+    ++I  N        +H++ GR GR  E+   + L    
Sbjct: 304 GEIEVLIATDIAARGLDIEKLPVVINFNLPRSPADYMHRI-GRSGRAGEVGLALSLVDYE 362

Query: 596 -YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
            +H         +L + +    GF + + +L 
Sbjct: 363 DFHHFKVIEKKNKLRLEREEVTGFAVNQANLD 394


>gi|326798202|ref|YP_004316021.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326548966|gb|ADZ77351.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 419

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 131/344 (38%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------EAGGQAV 325
           +PT  Q  AI  +L           +     G+GK+   ++ +   +      E   +A+
Sbjct: 23  TPTPIQSQAIPVVLSGRD------LLGCAQTGTGKSAAFILPILQQLNSLPNKEKAVKAL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  E I  Y Q   +  +++ G +    +   L++       I++ T   
Sbjct: 77  VLAPTRELAIQINESIATYGQLLPLKHQVVYGGVNINTQISGLKK----GIDILVATPGR 132

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRT- 434
             D +    L L      ++DE  R      +   +K           L  +AT  P   
Sbjct: 133 LLDLVGQRVLTLRAVSHFVLDEADRMLDMGFIHDIKKVVALLPIKRQTLFFSATMPPEIT 192

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L  T L +    ++T   +  + +  V+  +++ ++    L ++ SE +    +  +  
Sbjct: 193 KLANTLLKNPVRVEVTPVSSTAEKVTQVVYAVDKANKPKLLLHLLKSEVRDHVLVFTRT- 251

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   +R            A IHG  S   +++ + +FK+G  K+LIAT +   
Sbjct: 252 -------KHGADRLVKFLAKQGVQAAAIHGNKSQNARQNALQAFKSGQLKVLIATDIAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GIDV +   +I  +  +     +H++ GR GR       +    
Sbjct: 305 GIDVEELKFVINFDLPNEPETYVHRI-GRTGRAGASGKALSFCD 347


>gi|324517616|gb|ADY46875.1| Eukaryotic initiation factor 4A-III [Ascaris suum]
          Length = 405

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 138/369 (37%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   +       QA+I++
Sbjct: 54  KPSAIQQRAIKQIIKGRDV------IAQAQSGTGKTATFSISVLQGLNTTIRETQALILS 107

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        +      G        + L+       H++ GT     D
Sbjct: 108 PTRELASQIQKVILALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVSGTPGRVFD 163

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G +++L    +       V+L++AT     L +T
Sbjct: 164 MIRRRNLRTRSIRMLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMT 223

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    +  +I  K      + IK   + ++R +   + L          Y      +   
Sbjct: 224 SKFMTNPIRILVKRDELTLEGIKQFFVAVDREEWKFDTL-------CDLYDTLTITQAVI 276

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+      +    +++ +HG M   ++++++  F++GT +LLI+T V   G+D
Sbjct: 277 FCNTRRKVDWLAEKLKEANFTVSAMHGDMEQKERDAIVKEFRSGTSRLLISTDVFARGLD 336

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   S+++  +  +     +H++ GR GR       I        +             D
Sbjct: 337 IPQVSLVVNYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDIRILRDIEQYYATQID 395

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 396 EMPMNVADL 404


>gi|126179703|ref|YP_001047668.1| DEAD/DEAH box helicase domain-containing protein [Methanoculleus
           marisnigri JR1]
 gi|125862497|gb|ABN57686.1| DEAD/DEAH box helicase domain protein [Methanoculleus marisnigri
           JR1]
          Length = 527

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 69/344 (20%), Positives = 124/344 (36%), Gaps = 35/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            PT  Q S I  IL             Q   G+GKT    +     V+ G    Q ++++
Sbjct: 27  EPTPIQVSTIPAILDGRDVTG------QAQTGTGKTAAFGVPAIERVDTGSRETQVLVLS 80

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +  ++   I +  I G  P   + +AL+R       I++GT     
Sbjct: 81  PTRELAIQTAEEFSRLAKHHQGINILPIYGGQPIDRQFRALQR----GVQIVVGTPGRVL 136

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVL 437
           D +    L        +L   D+    G ++ +   L         +L +AT     L +
Sbjct: 137 DHLDRGTLSFGAVKVVVLDEADQMLDMGFREDIEKILDDTPRDRQTILFSATLPKPILEI 196

Query: 438 T--SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           +     + +   +  K      I+ + + +   D +    +++         I       
Sbjct: 197 SKKFQKNPEFISVARKEVTVPQIEQLYLEVRSRDRLEILTRLLDMYDPDLTLIF------ 250

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             SN +  V+   +  +        +HG M    ++ VM  F+ G+  +L+AT V   GI
Sbjct: 251 --SNTKRGVDDLTTHLQARGYFAEGLHGDMKQTLRDRVMAKFRAGSIDILVATDVAARGI 308

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV D  ++I  +        +H++ GR  R       +    P 
Sbjct: 309 DVEDVDLVINYDVPQDIEYYIHRI-GRTARAGRTGRAVTFVGPK 351


>gi|90416373|ref|ZP_01224305.1| ATP-dependent RNA helicase DeaD [marine gamma proteobacterium
           HTCC2207]
 gi|90332098|gb|EAS47312.1| ATP-dependent RNA helicase DeaD [marine gamma proteobacterium
           HTCC2207]
          Length = 619

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 141/375 (37%), Gaps = 44/375 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---G 322
           + + +  P+  QE++I  +L+          +     G+GKT    +   + ++      
Sbjct: 20  QQLGYEQPSPVQEASIPILLEGK------NLLGTAQTGTGKTAAFALPFLSKLDEKQKTP 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++ P   LA Q  E  + Y ++     V  I G      + + L+R     A +++G
Sbjct: 74  QVLVLTPTRELAIQVAEAFQSYAKHIKGFHVLPIYGGADIGGQLRGLKR----GAQVVVG 129

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D ++   L L  +        DE  R G    +           +L    P  +
Sbjct: 130 TPGRMLDHLRRRSLDLSQIKGLILDEADEMLRMGFIDDV---------ETILAKTPPECQ 180

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
             + ++     I ++ +K  G   + ++      ++ + +    ++ +G +      +I 
Sbjct: 181 RTLFSATMPPAIKRVADKYLGDAEVVSIENKTKTVERIAQSH--LMVKGHQKMDALTRIL 238

Query: 494 EKKESNFRSVV--------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           + ++ +   +         E    L     SS A+ +G ++   +E  ++  K G   ++
Sbjct: 239 DVEQFDGMIIFVRTKSSTLEIAEKLEARGFSSAAL-NGDLTQTVRERTINRLKKGQLDIV 297

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+DV   S +I  +  +   + +H++ GR GR       I+      ++   
Sbjct: 298 VATDVAARGLDVERISHVINYDVPYDNESYVHRI-GRTGRAGREGKAIMFVTQKETRMLR 356

Query: 606 TRLSVLKNTEDGFLI 620
           +     +     F +
Sbjct: 357 SIEKSTRQPISSFNL 371


>gi|320590111|gb|EFX02556.1| dead deah box RNA helicase [Grosmannia clavigera kw1407]
          Length = 1178

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 81/428 (18%), Positives = 148/428 (34%), Gaps = 56/428 (13%)

Query: 265 ILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----- 318
           ++  + +  PT  Q  A+  I+           I     GSGKT+  L+ M   +     
Sbjct: 552 VIEQLGYDKPTAIQMQALPVIMSGRDV------IGVAKTGSGKTMAFLVPMFRHIMDQER 605

Query: 319 --EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
             + G   +I+ P   LA Q +   K + +   +      G  P   +   L+R     A
Sbjct: 606 VRDDGPIGLILTPTRELAVQIHRDCKPFAKKLGLRAVCAYGGPPIKDQIAELKR----GA 661

Query: 377 HIIIGTHALFQDS--------IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            I++ T     D         +   +   +++DE  R           K  A        
Sbjct: 662 EIVVATTGRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANIR----- 716

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV------IIPINRIDEVIERLKVVLSEG 482
            P  +TL+ ++     I  + +K        TV         I ++ EV +     L   
Sbjct: 717 -PDRQTLLFSATMPRIIDALVKKVLHSPVEITVGGKSVVAPEITQMVEVRDEKDKFLRLL 775

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKN 539
           +    +    ++ +   F    E+ + L         +   +HG     D++S +  FK 
Sbjct: 776 ELLGELYMDDDDVRALIFVERQEKADELLRELLRKGYACMSLHGGKDQSDRDSTISDFKK 835

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G C +L+AT+V   G+DV    +++  +A +     +H+  GR GR     + +      
Sbjct: 836 GVCPVLVATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTFVTEE 894

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE-------GEILGIKQSGMPKFLIAQPELH 652
               +      L+    G  + E  L+ RK        G+     QSG     + + +  
Sbjct: 895 QENCAPGIAKALEQ--SGQPVPERLLEMRKAWREKVKTGK--AKDQSGFGGKGLEKLDKD 950

Query: 653 DSLLEIAR 660
               E AR
Sbjct: 951 R---EAAR 955


>gi|189025995|ref|YP_001933767.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum
           SS14]
 gi|189018570|gb|ACD71188.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum
           SS14]
          Length = 649

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 124/344 (36%), Gaps = 31/344 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           PT  Q +AI  +L           I +   G+GKT    + +   + +      A+++ P
Sbjct: 69  PTPIQAAAIPRLLAG-----DANIIAKARTGTGKTAAFGLPLIQELGSPCEHPGALVLVP 123

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q    +          +  + G +  A + + LE+       II+GT     D 
Sbjct: 124 TRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNLEQGGE----IIVGTTGRVIDH 179

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTS 439
           I+   L        IL   DE    G  + ++           VL+ +AT   + L + S
Sbjct: 180 IERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVLMFSATMPRQILSIAS 239

Query: 440 LGD-IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                        P   +P+    + + R  + IE L  ++      Y +          
Sbjct: 240 TFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDVSDNFYGLVF-------C 292

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             ++  +      +     +A +HG +    +E +++ F+    ++L+AT V   GID+ 
Sbjct: 293 QTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGIDIE 352

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
             + ++  +  H      H++ GR GR       I    P  ++
Sbjct: 353 GITHVVNYSIPHDSATYTHRV-GRTGRAGSQGIAISFVRPHETR 395


>gi|168828898|gb|ACA33927.1| vasa [Salvelinus leucomaenis]
          Length = 662

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 131/375 (34%), Gaps = 59/375 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------------ 319
            PT  Q+  I  I            +     GSGKT+  L+ +   +             
Sbjct: 248 KPTPVQKHGIPIIAAGRD------LMACAQTGSGKTVAFLLPILQQLMVDGVAASKFSEV 301

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              + +I+AP   L  Q Y   +K+   T +   ++ G +   H  + + +  +    ++
Sbjct: 302 QEPEVIIVAPTRELINQIYMEARKFAHGTCVRPVVVYGGISTGHTIREILKGCN----VL 357

Query: 380 IGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L      ++DE  R                    M A    +T
Sbjct: 358 CGTPGRLMDIIGRGKIGLSKLRYLVLDEADRMLDMGFEP--AMRNVVGSPGMPAKEDRQT 415

Query: 435 LVLTSLGDIDISKITEKP-----------------AGRKPIKTVIIPINRIDEVIERLKV 477
           L+ ++    DI K+                     +  + +   +   ++ D+++E LK 
Sbjct: 416 LMFSATYPEDIQKLAGDFLKKDYLFLAVGVVGGACSDVEQVVVQVTKFSKRDQLLEVLKT 475

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
             SE    +              +   +   +       +   IHG     ++E  +  F
Sbjct: 476 TGSERTMVFV-----------ETKRQADFIATFLCQEKVNTTSIHGDREQREREQALGDF 524

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G C +L+AT+V   G+D+ D   I+  +  +     +H++ GR GR       +  + 
Sbjct: 525 RSGKCPVLVATSVAARGLDIKDVQHIVNFDLPNNIDEYVHRI-GRTGRCGNTGRAVCFFD 583

Query: 598 PP-LSKNSYTRLSVL 611
           P   S  + + + VL
Sbjct: 584 PEADSNLARSLVKVL 598


>gi|322377346|ref|ZP_08051837.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M334]
 gi|321281546|gb|EFX58555.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M334]
          Length = 524

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 134/363 (36%), Gaps = 34/363 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +   L L  +        DE    G        +++   +   LL +AT     + + + 
Sbjct: 135 KRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  KI  K    + +    I +   ++     +++  E  +   +  +       
Sbjct: 195 FMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+ 
Sbjct: 249 --KRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    I    P          ++ K    G 
Sbjct: 307 GVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVSPNEMGYLQIIENLTKKRMKGL 365

Query: 619 LIA 621
             A
Sbjct: 366 KPA 368


>gi|127512383|ref|YP_001093580.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126637678|gb|ABO23321.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 441

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 82/370 (22%), Positives = 133/370 (35%), Gaps = 43/370 (11%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           L ++ +   T  Q  AI  IL           +     GSGKT    + +   +    AG
Sbjct: 39  LHHLGYQQATPIQAKAIPAILAGRD------LLAGAKTGSGKTAAFALPLLQKLVGQRAG 92

Query: 322 GQ----AVIMAPIGILAQQHYEFIKKYTQNTQII--VEIITGNMPQAHRRKALERIAHGQ 375
           G     A+++ P   LAQQ  +    Y         V  + G +    +  AL     G 
Sbjct: 93  GGNHVGALVLVPTRELAQQVADSFISYGAELAPRAKVIAVFGGVSVNSQMLALR----GG 148

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLL 425
           A I++ T     D +        Q   L+L   D     G  + L   L Q       LL
Sbjct: 149 ADILVATPGRLLDLLGSNAVKLSQLKALVLDEADRMLNLGFTEELGEILKQLPDQKQTLL 208

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
            +AT     L LT+    D  +I  + A    I+  +  +NR ++     +++     + 
Sbjct: 209 FSATFPEEVLSLTAKLLTDPVEIQMQEAQSADIEQRVYTVNRSNKTALLAELIKVRQWRQ 268

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             +          + +   +      E    S  + HG  +   +  V+D FKNG   +L
Sbjct: 269 VLVFA--------SAKRSCDHLAQKLEKRGISAQVFHGDKAQGARSRVLDGFKNGEITVL 320

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           IAT +   GID+    ++I           LH++ GR GR  E    I L    +S + Y
Sbjct: 321 IATDIAARGIDIDKLPVVINFELPRSPADYLHRI-GRSGRAGETGEAISL----ISHDEY 375

Query: 606 TRLSVLKNTE 615
               V++   
Sbjct: 376 HHFKVIEKKN 385


>gi|168053931|ref|XP_001779387.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669185|gb|EDQ55777.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 741

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 74/383 (19%), Positives = 136/383 (35%), Gaps = 45/383 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q  +   +L           I     GSGKT   ++ M   +          G   
Sbjct: 257 PTPIQCQSCPIVLSGRD------LIGIAKTGSGKTAAFVLPMMVHIMDQPELGKGEGPIG 310

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI AP   LAQQ Y   KK+ +   I +  + G M +  + K L+        +++ T  
Sbjct: 311 VICAPTRELAQQIYSEAKKFAKVHGIRISGVYGGMSKFEQFKELKAGCE----VVVATPG 366

Query: 385 LFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D I+   L +     +++DE  R          +             P  +TL+ ++
Sbjct: 367 RLIDMIKMKALSMHRATYLVLDEADRMFDLGFEPQIRSIVGQIR------PDRQTLLFSA 420

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-----KKAYWICPQIEE 494
                + ++  +     PI+  +  I   +E I ++  VL             + P +++
Sbjct: 421 TMPKRVERLA-REILTDPIRVTVGEIGSANEDITQVVTVLPSDAEKTPWLLDRLQPFVDD 479

Query: 495 KKESNFRSVVERFNSLH---EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F S   R   L          +A +HG      +  V+  FKNG   +L+AT V 
Sbjct: 480 GDVLVFASTKLRVEELEGKISEAGFKVAALHGDKDQATRMEVLQKFKNGIYHILVATDVA 539

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS-CILLYHPPLSKNSYTRLSV 610
             G+D+     ++  +      + +H++ GR GR  +       L     ++ +   ++ 
Sbjct: 540 ARGLDIKSIKTVVNVDIARDMDSHVHRI-GRTGRAGDKDGVAHTLVTGKEARFAGELVNS 598

Query: 611 LKNTEDG-----FLIAEEDLKQR 628
           L             +A +D + R
Sbjct: 599 LIAAGQNVPTELMDLAMKDGRYR 621


>gi|319441074|ref|ZP_07990230.1| ATP-dependent RNA helicase [Corynebacterium variabile DSM 44702]
          Length = 732

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 133/369 (36%), Gaps = 35/369 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +P+  Q + I  ++           +     G+GKT    +   + +   E   Q +++A
Sbjct: 91  TPSPIQAATIPALMDGHDV------VGLAQTGTGKTAAFALPALSRLDTTERHPQVLVLA 144

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  + +  +   + +  I G  P   +   L R     A +I+GT     
Sbjct: 145 PTRELALQSADAFESFASHIGGVSILPIYGGAPYGAQLSGLRR----GAQVIVGTPGRII 200

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRTL 435
           D ++   L L  +        DE    G Q+ +   L     +  V L +AT     R L
Sbjct: 201 DHLEKGSLDLSHLRFLVLDEADEMLNMGFQEDVERILADTPDSRQVALFSATMPSAIRRL 260

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D     +  +      I    + ++  +++    +++      A  I  + +  
Sbjct: 261 SKQYLNDPQEYTVKSEQRTGDNITQDYLMVSHRNKLDALTRILEVTEFDAMIIFVRTKSD 320

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E       E  + L      + AI +G ++   +E  +D  K+G   +L+AT V   G+
Sbjct: 321 TE-------ELADKLRARGFEAAAI-NGDIAQNQRERTVDQLKDGRLDILVATDVAARGL 372

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   + +   +      + +H++ GR GR       IL   P   +         K+  
Sbjct: 373 DVDRITHVFNYDIPRDTESYVHRI-GRTGRAGRTGRAILFVTPRERRLLKNIERATKSHP 431

Query: 616 DGFLIAEED 624
           +   +   D
Sbjct: 432 NEIQLPGVD 440


>gi|241662052|ref|YP_002980412.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240864079|gb|ACS61740.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 565

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 127/366 (34%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q  AI  IL+          +     G+GKT    + +   + A           
Sbjct: 23  EPTPIQRQAIPAILKG------GDLLAGAQTGTGKTAGFTLPLLHRLSASQPNKVQTPQG 76

Query: 323 -----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                +A+++ P   LA Q  E ++ Y +   +   ++ G +    +  AL+R       
Sbjct: 77  MRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKR----GVD 132

Query: 378 IIIGTHALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I++ T     D +         + L+++DE  R      +   +K      +L    P  
Sbjct: 133 IVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRK------ILNILPPKR 186

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           + L+ ++    DI ++ ++    KP    +   N   E +E+    +   +K   +   +
Sbjct: 187 QNLLFSATFSDDIRELADRLLD-KPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLV 245

Query: 493 EEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +            +    R              IHG  S   +   +  FK GT ++L+
Sbjct: 246 RDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFKAGTLRVLV 305

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT +   GID+     ++  +  +     +H++ GR GR       I L           
Sbjct: 306 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGAQGEAISLVCVDEHGLLRD 364

Query: 607 RLSVLK 612
              ++K
Sbjct: 365 IERLIK 370


>gi|157413572|ref|YP_001484438.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9215]
 gi|157388147|gb|ABV50852.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9215]
          Length = 593

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 131/345 (37%), Gaps = 43/345 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMA 328
           PT  Q++AI +++           + Q   G+GKT    + +   +        + ++M 
Sbjct: 74  PTPIQKAAIPELMLGRD------LLGQAQTGTGKTAAFALPLIEKLTNNKELNAKVLVMT 127

Query: 329 PIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    F    ++++      I G     ++  AL+R    +  +++GT     
Sbjct: 128 PTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKR----KVDVVVGTPGRIM 183

Query: 388 DSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVL 437
           D I+           L+L   DE    G  + ++    Q      ++L +AT        
Sbjct: 184 DHIRQGTFKIKHINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSAT-------- 235

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                 +I  I +K     P + +I  + +  ++I +  + +    K   +   +E   E
Sbjct: 236 ---MPSEIRNIAKKYLN-DPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNNE 291

Query: 498 SNFRSVVERF-----NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                V  +          E+   ++A+++G +    +E+ +D  K G   +L+AT V  
Sbjct: 292 GVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAA 351

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            G+DV    +++  +         H++ GR GR       IL  +
Sbjct: 352 RGLDVERIKLVVNYDFPFDKETYTHRI-GRTGRAGRSGEAILFVN 395


>gi|153803281|ref|ZP_01957867.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
 gi|153803543|ref|ZP_01958129.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
 gi|124120924|gb|EAY39667.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
 gi|124121185|gb|EAY39928.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
          Length = 406

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 144/366 (39%), Gaps = 35/366 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 22  EPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 75

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  E + +      +    + G + +A ++ AL        +I++ T     D 
Sbjct: 76  TRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKAEQQNALAE----NPNILVATTGRLFDL 131

Query: 389 ---SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               ++  ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 132 TQSGLRLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTASVRQTVMCSATFSDD 184

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 185 LKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 244

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S   +E+ +  FKNGT ++LIAT ++  GI +  
Sbjct: 245 AKENADSLTKKLNKAGIVATALHGDKSQTQREAALAEFKNGTTQVLIATDLLARGIHIEQ 304

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPLS----KNSYTRLSVLKNT 614
             ++I           +H++ GR  R  +    + L+ H  +       + T+  +    
Sbjct: 305 LPVVINFELPMHAETYVHRV-GRTARAGQQGIALSLVCHGEMDALNAIRTLTQRQLPVQN 363

Query: 615 EDGFLI 620
            DGF +
Sbjct: 364 LDGFPV 369


>gi|168180353|ref|ZP_02615017.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum NCTC 2916]
 gi|182668688|gb|EDT80666.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum NCTC 2916]
          Length = 481

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 135/364 (37%), Gaps = 35/364 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  P++ Q+  I  IL+D         I++ + GSGKT    I +   +E     
Sbjct: 19  LGRLGYKNPSEVQKQVIPLILKDKD------IIVKSETGSGKTAAFSIPICEKIELEEKD 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++ P   LA Q  E I       ++    I G  P + +++ L++    + H+++G
Sbjct: 73  PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELKQ----RVHLVVG 128

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L        +L   DE    G   Q   + ++     V ++ +  IP
Sbjct: 129 TPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVTMLFSATIP 188

Query: 433 R---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L    + +     I  +      I      +   D+     K++  E      I 
Sbjct: 189 EKIENLCKKYMNNPQNININPENITTGTINQCYYEVEDKDKFSLLQKIIYKEVVDNSIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
               EK +       E    + +   ++I + HG M   D+   M  FK G  + L+ T 
Sbjct: 249 CNTREKVD-------EVLKHMKKKGFNAIGL-HGGMEQKDRLETMKKFKQGEFQFLVCTD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GI + + S +I     +   + +H++ GR GR  +    I    P   +       
Sbjct: 301 VAARGIHIENISHVINYEMPYEKESYVHRI-GRTGRAGKEGVAITFIEPNKVRFLKDIED 359

Query: 610 VLKN 613
            ++ 
Sbjct: 360 YIEK 363


>gi|319425941|gb|ADV54015.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 449

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 84/400 (21%), Positives = 142/400 (35%), Gaps = 39/400 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ ++ Q +      +PT  QE A+   L           +     GSGKTL  L+  
Sbjct: 6   FSLDQRLLQSLKHMGITAPTAIQEQALPIALAGKD------LMASSKTGSGKTLAFLLPA 59

Query: 315 AAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              V       +   + +I+ P   LA Q Y  ++    NTQ     + G      + KA
Sbjct: 60  LQRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKAT 419
           L +    + H I+ T     D ++   L        IL   D     G   +LK   +A 
Sbjct: 120 LAK----EPHFIVATPGRIADHLEQKHLFLNGLELLILDEADRMLDLGFAPQLKTINEAA 175

Query: 420 AP---HVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  L+ +AT        +  T L +     I    +    I   I   + +D    
Sbjct: 176 DHKRRQTLMFSATLDHSEINDIAATLLKNPAHVAIDASHSEHNDIHQRIFLCDHLDHKEA 235

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L  +L +      I            R   ER  +       + A + G +    +  +
Sbjct: 236 LLTRLLQDETHKQVIVFT-------ATRPDTERLAAKLSTQGFATAALSGDLKQAARNQI 288

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           MD F  G  ++L+ T V   G+D+++ S++I  +   F    +H++ GR GR       I
Sbjct: 289 MDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDAI 347

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI 633
            L  P    N       L+ T +  +I   + K R   E+
Sbjct: 348 SLVGPKDWDNFKKVQIFLRKTFEISVIPGLEAKFRGLKEL 387


>gi|50550293|ref|XP_502619.1| YALI0D09449p [Yarrowia lipolytica]
 gi|74659944|sp|Q6C9P3|DBP3_YARLI RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49648487|emb|CAG80807.1| YALI0D09449p [Yarrowia lipolytica]
          Length = 532

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 148/388 (38%), Gaps = 39/388 (10%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +Q +  +            K+L   P  PT  Q  +   +L           +   + GS
Sbjct: 120 EQMRPTMEFSHVTLDPRITKVLTKFP-RPTPIQAVSWPYLLAGKD------MVGVAETGS 172

Query: 305 GKTLVALIAMAAAVEA-----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           GKT    +     V +     G + ++++P   LA Q Y+ IK+      +    + G +
Sbjct: 173 GKTFTFAVPALEHVLSTSGGKGVRVLVVSPTRELAMQIYDNIKELCDVVGLHAVCVYGGV 232

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKL 414
           P+  +R  L+R     A  +I T     D I        K+  +++DE  R   +   + 
Sbjct: 233 PKEQQRSDLKR-----ASFVIATPGRLCDLIDEGSCDLSKVSYLVLDEADRMLEKGFEED 287

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI--DEVI 472
            +      ++  T     +T++ ++    ++ K+ E    + P K +I   + +  ++ I
Sbjct: 288 IK-----KIIGSTRPTGRQTVMFSATWPPEVRKLAE-GFMKTPTKVMIGERDELAANKRI 341

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN--------FRSVVERFNSLHEHFTSSIAIIHGR 524
            +   VL    K   +   + +    +        ++    R  +        +A IHG 
Sbjct: 342 TQSVEVLDPRAKEGRLLDLLRQYANDDFKILIFALYKKEATRVENTLTRRGYGVAAIHGD 401

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
           +S   +   +D FK G   +L+AT V   G+D+ +  ++I           +H++ GR G
Sbjct: 402 LSQQQRTKALDEFKKGEKNILLATDVAARGLDIPNVKLVINLTFPLTVEDYVHRI-GRTG 460

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLK 612
           R  +    I L+       S   ++VL+
Sbjct: 461 RAGKTGQAITLFTEHEKHLSGALINVLR 488


>gi|298490698|ref|YP_003720875.1| DEAD/DEAH box helicase domain-containing protein ['Nostoc azollae'
           0708]
 gi|298232616|gb|ADI63752.1| DEAD/DEAH box helicase domain protein ['Nostoc azollae' 0708]
          Length = 492

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 121/348 (34%), Gaps = 41/348 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q  AI  +L           +     G+GKT    + +   + +           
Sbjct: 23  KPTPIQMQAIPAVLSG------GDLLAGAQTGTGKTASFTLPLLHQLSSNKNVKSNSTGW 76

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+ P   LA Q  E +  Y +  ++    + G +    +++ L+        I+
Sbjct: 77  VPIRALILTPTRELAAQVEESVHDYGKYLKLKSMAMFGGVSINPQKRLLKS----GVDIV 132

Query: 380 IGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T     D ++       ++ ++++DE  R      ++           +M+  P  R 
Sbjct: 133 VSTPGRLLDHVEQGTVNLSRIEVLVLDEADRMLDMGFIRDI-------RRIMSILPKKRQ 185

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            +L      D  K        +P    +   N   + I +    +   KK   +   I++
Sbjct: 186 NLLFFATFSDKIKELAAGLLNRPTMIEVARRNVTADTIAQRAYQVDRDKKPQLLAHLIKQ 245

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +R              IHG  S   +   +  FKNG+ ++L+AT
Sbjct: 246 DDWYQVLVFTRTKYGADRLVKQLNDDRIQALAIHGNKSQGARTHALAKFKNGSLQVLVAT 305

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            +   G+D+ +   ++  +  +     +H++ GR GR       I L 
Sbjct: 306 DIAARGLDISELPHVVNYDLPYVPEDYVHRI-GRTGRAGARGEAISLV 352


>gi|108759595|ref|YP_632093.1| RNA helicase DeaD [Myxococcus xanthus DK 1622]
 gi|108463475|gb|ABF88660.1| RNA helicase DeaD [Myxococcus xanthus DK 1622]
          Length = 602

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 129/358 (36%), Gaps = 47/358 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           L  + +  PT  Q +A+  +L           +     G+GKT    + +   VE G   
Sbjct: 59  LSALGYEEPTPIQAAALPPLLAGKD------LLGIAATGTGKTAAFALPLLNHVEPGACR 112

Query: 324 -----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A+++ P   LA Q  E I +Y Q   I V  + G      + + L+R       +
Sbjct: 113 PNTTSALVLVPTRELAMQVSEAIHRYGQKLGISVLPLYGGQVIGQQLRVLKR----GVDV 168

Query: 379 IIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           ++ T     D ++   L L  V        DE    G  + L+     T           
Sbjct: 169 VVATPGRALDHLRRGTLQLDDVRVVVLDEADEMLDMGFAEDLEAILSGTPED-------- 220

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVI----IPINRIDEVIERLKVVLSEGKKAY 486
             +T + ++     I+ I E+    +P++  I    +    I  V +    V+    K  
Sbjct: 221 -RQTALFSATLPPRIASIAERHL-HEPVRVKIAREKVEQGEIPRVRQT-AYVVPRAFKIA 277

Query: 487 WICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +   ++ +           R+ V+               +HG M+   ++ V+   K+ 
Sbjct: 278 TLGRLLDVESPTAAIIFCRTRTEVDDLTVSLNGRGWRAHALHGGMTQEQRDRVIKQLKSQ 337

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              LL+AT V   G+D+   S ++  +  +   A +H++ GR GR       I L  P
Sbjct: 338 GTDLLVATDVAARGLDIPRLSHVVNFDVPNAPEAYVHRI-GRTGRAGREGVAITLVEP 394


>gi|255731175|ref|XP_002550512.1| eukaryotic initiation factor 4A-12 [Candida tropicalis MYA-3404]
 gi|240132469|gb|EER32027.1| eukaryotic initiation factor 4A-12 [Candida tropicalis MYA-3404]
          Length = 399

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 142/394 (36%), Gaps = 40/394 (10%)

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           E        + + + F+     P  ++G  A          P+  Q  AI  I+      
Sbjct: 13  EFSHKSTKGIKVHRTFESMKLKPELLKGIYAYGFEA-----PSAIQSRAIMQIISGKDT- 66

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNT 348
                I Q   G+GKT    I M   ++      QA+I++P   LA Q    +K      
Sbjct: 67  -----IAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELATQIQNVVKHLGDYM 121

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIV 400
            I      G        K L++       I+ GT     D I+   L        IL   
Sbjct: 122 NIHTHACIGGKNVGDDVKKLQQGQ----QIVSGTPGRVLDVIKRRNLQTRNIKVLILDEA 177

Query: 401 DEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           DE    G ++++    K   P   V++++AT     L +TS    D  KI         +
Sbjct: 178 DELFTKGFKEQIYEIYKHLPPAVQVVVVSATLSREVLEMTSKFTTDPVKIL--------V 229

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---T 515
           K   I ++ I +   + +    +      +   +   +   F +   + N L +      
Sbjct: 230 KQDEISLSGIKQYYVQCEQEDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLTDQMRKQN 289

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            ++  +HG M   ++ES+M+ F+ G  ++LI+T V   GIDV   S++I  +        
Sbjct: 290 FTVVSMHGDMKQDERESIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENY 349

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +H++ GR GR     + I L              
Sbjct: 350 IHRI-GRSGRFGRKGTAINLITKDDVSTLKELER 382


>gi|171318169|ref|ZP_02907335.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171096637|gb|EDT41526.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 571

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 70/364 (19%), Positives = 127/364 (34%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 107 TPTPIQAQAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPQASTSASPARH 160

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 161 PVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRR----GVEILI 216

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 217 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 276

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    +    +  ++  +   D+    ++++   G K   +
Sbjct: 277 SPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHSAVVQLLRDRGLKQVIV 336

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      + IHG  S +++   +D+FK G  + L+AT
Sbjct: 337 F--------CNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVAT 388

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+V+   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 389 DVAARGLDIVELPAVINFDLPFNAEDYVHRI-GRTGRAGATGDALSLCSPNERKQLADIE 447

Query: 609 SVLK 612
            ++K
Sbjct: 448 KLIK 451


>gi|84995732|ref|XP_952588.1| eukaryotic translation initiation factor 4a [Theileria annulata
           strain Ankara]
 gi|65302749|emb|CAI74856.1| eukaryotic translation initiation factor 4a, putative [Theileria
           annulata]
          Length = 400

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 138/358 (38%), Gaps = 42/358 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  Q+  IK I+++         I Q   G+GKT    IA    +       Q +I+AP
Sbjct: 51  PSAIQQRGIKPIIENYDT------IGQAQSGTGKTATFSIAALQIINYDVMSCQILILAP 104

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ  + +       ++      G          L+       H+++GT     D 
Sbjct: 105 TRELAQQIQKVVLALGDYLKVQCHACVGGTVVRDDVHKLKA----GVHMVVGTPGRVYDM 160

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           I+   L        IL   DE    G + +++   K   P +         +  + ++  
Sbjct: 161 IEKKALLTDKMKLFILDEADEMLSRGFKGQIQDVFKRLPPDI---------QVALFSATM 211

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE------K 495
             +I ++T K   R P + ++       E I++  +++ +  K   +C   E        
Sbjct: 212 PNEILELTTKFM-RSPKRILVKKDELTLEGIKQFYILIDKEYKFETLCDLYESVTITQAI 270

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N R  V+      +    +++ +HG M   +++ +M  F++G+ ++LI T ++  GI
Sbjct: 271 IYCNTRRKVDYLTLKMQEKDFTVSSMHGDMGQKERDLIMREFRSGSTRVLITTDLLARGI 330

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           DV   S++I  +        +H++ GR GR       I       +      +  ++N
Sbjct: 331 DVQQVSLVINYDLPMSPDNYIHRI-GRSGRFGRKGVAINFV----THQDMETMKSIEN 383


>gi|62390044|ref|YP_225446.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|41325380|emb|CAF19860.1| Superfamily II DNA and RNA helicase [Corynebacterium glutamicum
           ATCC 13032]
          Length = 732

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 130/343 (37%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q   I  +++          +     G+GKT    + + A ++      QA+++A
Sbjct: 124 TPSPIQAQTIPILMEGQDV------VGLAQTGTGKTAAFALPILARIDKSVRSPQALVLA 177

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P    A Q  +  + +  +   + V  I G      +   L R     AHI++GT     
Sbjct: 178 PTREQALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRR----GAHIVVGTPGRII 233

Query: 388 DSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRTL 435
           D ++           L+L   DE    G Q+ +   L        V L +AT     R L
Sbjct: 234 DHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVALFSATMPNGIRRL 293

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L +     +  +      I    + +   +++    +++     +A  +  + + +
Sbjct: 294 SKQYLNNPAEITVKSETRTNTNITQRFLNVAHRNKMDALTRILEVTEFEAMIMFVRTKHE 353

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E       E    L     S+ AI +G ++   +E  +D  K+G   +L+AT V   G+
Sbjct: 354 TE-------EVAEKLRARGFSAAAI-NGDIAQAQRERTVDQLKDGRLDILVATDVAARGL 405

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV   S ++  +  +   + +H++ GR GR       IL   P
Sbjct: 406 DVERISHVLNFDIPNDTESYVHRI-GRTGRAGRTGEAILFVTP 447


>gi|313500928|gb|ADR62294.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida BIRD-1]
          Length = 461

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 86/461 (18%), Positives = 175/461 (37%), Gaps = 62/461 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + + S T  Q  ++  IL+          I Q   GSGKT    I +   +     G
Sbjct: 21  LEALGYASMTPIQAQSLPVILKGQD------LIAQAKTGSGKTAAFGIGLLNPINPRYFG 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    I +  + G +    +  +LE      AHII+
Sbjct: 75  CQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH----GAHIIV 130

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-T 434
           GT    Q  +    L+L      ++DE  R                   ++  TP  R T
Sbjct: 131 GTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIAS-------IIGKTPSRRQT 183

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I ++          + V +     D  IE+  + +   ++   +   +  
Sbjct: 184 LLFSATYPAGIKQLAADFMRNP--QQVKVESLHTDNQIEQRFIEIDPQQRLEAVTRVLGH 241

Query: 495 KKESNFRSVV---ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +  +  +     ++   +  H T+       +HG +   D++ V+  F N +  +L+AT
Sbjct: 242 YRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+    ++I           +H++ GR GR  E    + L  P     +    
Sbjct: 302 DVAARGLDIDGLDMVINVELARDAEIHVHRV-GRTGRAGEKGVAVSLVAPAEGHRAQAIE 360

Query: 609 SVLK-----------NTEDG---------FLIAEEDLKQRKEGEILG--IKQSGMPKFLI 646
           ++ K             + G           IA     + + G+ILG     +G+P   +
Sbjct: 361 ALQKSPLRWDQLDSLKNKGGEPLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQV 420

Query: 647 AQPELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            +  + D  + + + R  AK  + +  +   ++G+S+++ +
Sbjct: 421 GKIAIFDFQAFVAVERALAKQAMQRL-NSGKIKGRSLKVRI 460


>gi|261749520|ref|YP_003257206.1| ATP-dependent RNA helicase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497613|gb|ACX84063.1| ATP-dependent RNA helicase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 542

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 69/368 (18%), Positives = 146/368 (39%), Gaps = 40/368 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +PT  Q+  I  +L+       ++ + Q   G+GKT    + +   +       QA+I+ 
Sbjct: 25  TPTPIQKKVIPYLLK---SGKDLIALAQ--TGTGKTAAFGLPIIQKINLEFRFPQALILC 79

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   L  Q    + ++++    I +  + G +   ++  +L++    + HII+GT     
Sbjct: 80  PTRELCIQITRDLSRFSRYISLIKIIPLYGGVSIENQILSLQK----RTHIIVGTPGRII 135

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D I+  KL L  +        DE    G ++ L           +++      ++L+ ++
Sbjct: 136 DLIERKKLHLSDIKYLVLDEADEMLNMGFKEEL---------DSIIIKLPKKRQSLLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                ++ I        PI+ +    N   + +  +  ++S   K   +   ++   +  
Sbjct: 187 TMSKYMNGIAHDYL-IDPIEIITGKRNFASDDVRHIYYIVSNQNKYLALKRIVDINPDIY 245

Query: 500 -------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +   E   SL +    +   ++G +S   +ESVM+ F+N   + L+AT +  
Sbjct: 246 GIIFCKTRKETREIAESLIQDGY-NADALYGDLSQSQRESVMNRFRNRILQFLVATDIAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GIDV D + +I  N        +H+  GR GR       + + H   ++N       + 
Sbjct: 305 RGIDVNDVTHVINYNIPDESEIYVHR-SGRTGRAGNTGISVCIIHSRETRNLREFEKKIG 363

Query: 613 NTEDGFLI 620
            + +  +I
Sbjct: 364 KSFERIMI 371


>gi|147821303|emb|CAN74586.1| hypothetical protein VITISV_041989 [Vitis vinifera]
          Length = 771

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 137/384 (35%), Gaps = 45/384 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            PT  Q  A   +L           I     GSGKT   ++ M   +        E G  
Sbjct: 248 KPTPIQCQAFPIVLSGRD------IIGIAKTGSGKTAAFVLPMIVHIMDQPELAKEEGPI 301

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            VI AP   LA Q Y   KK+ +   I V  I G M +  + K L+        I+I T 
Sbjct: 302 GVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQFKELKSGCE----IVIATP 357

Query: 384 ALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D I+   L ++     ++DE  R          +             P  +TL+ +
Sbjct: 358 GRLIDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIR------PDRQTLLFS 411

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICP----QIE 493
           +     + K+  +     P++  +  +   +E I ++  V+    +K  W+       I+
Sbjct: 412 ATMPRKVEKLA-REILTDPVRVTVGEVGMANEDITQVVQVIPSDAEKLPWLLDKLPGMID 470

Query: 494 EKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +     F S     + +          IA +HG      +  ++  FK+G   +LIAT V
Sbjct: 471 DGDVLVFASKKATVDEIESQLGQKGLKIAALHGDKDQASRMDILQKFKSGIYHVLIATDV 530

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS-CILLYHPPLSKNSYTRLS 609
              G+D+     ++  +      A +H++ GR GR  +       L     ++ +   + 
Sbjct: 531 AARGLDIKSIKSVVNFDIARDMDAHVHRI-GRTGRAGDKDGTAYTLITHKEARFAGELVG 589

Query: 610 VLKNTEDG-----FLIAEEDLKQR 628
            L             +A +D + R
Sbjct: 590 SLIAAGQNVPMELMDLAMKDGRFR 613


>gi|70985190|ref|XP_748101.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus fumigatus Af293]
 gi|66845729|gb|EAL86063.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus fumigatus Af293]
          Length = 505

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 127/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I +   ++      QA++++
Sbjct: 132 SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSIGILQVIDTVVRETQALVLS 185

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + L+       H++ GT     D
Sbjct: 186 PTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQ----HVVSGTPGRVAD 241

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 242 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 292

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E I++  + +  E  K   +C   +      
Sbjct: 293 LPYDVLDMTTKFMT-DPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQ 351

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 352 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 411

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 412 GIDVQQVSLVINYDLPTNRENYIHRI-GRSGRFGRKGVAINFVTSD 456


>gi|261251266|ref|ZP_05943840.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891]
 gi|260938139|gb|EEX94127.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891]
          Length = 458

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 76/423 (17%), Positives = 147/423 (34%), Gaps = 60/423 (14%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ ++  T  Q+ A+  +L           I QG  GSGKT    + + + +      
Sbjct: 18  LDSLGYTEMTPIQQQALPMVLAGKDV------IGQGKTGSGKTATFSLGLLSNLNVKRFR 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++ P   LA Q  + I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 72  VQTLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 127

Query: 381 GTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D +        +   L+L   D     G +  +           ++       
Sbjct: 128 GTPGRILDHMSKGRISLDELNTLVLDEADRMLDMGFEDAI---------DTIIDAVPEKR 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++    +I  +  K     P    +   ++   + ++   + +  ++   +   +
Sbjct: 179 QTLLFSATFPDNIDSLAAK-VMVNPEMVKVESTHQKSTIEQKFYKLNTTEERDDALEALL 237

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              K        N +  V+       H   S+  +HG M   ++E  +  F N +  +L+
Sbjct: 238 LTHKPESSVVFCNTKKEVQNVTDELGHRGFSVVELHGDMEQREREQALTMFANKSISILV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV +   +            +H++ GR GR          Y          
Sbjct: 298 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRI-GRTGRAGSKGVAFSFYSEKEEYRVAR 356

Query: 607 RLSVL-----------KNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLI 646
               +           K  E  F    + ++           G+ILG   KQ+G+    I
Sbjct: 357 IDEYMDIAINASELPEKPVERAFYPKMQTIQILGGKKQKVRAGDILGALTKQAGLDGKKI 416

Query: 647 AQP 649
            + 
Sbjct: 417 GKI 419


>gi|224128550|ref|XP_002329031.1| predicted protein [Populus trichocarpa]
 gi|118482674|gb|ABK93256.1| unknown [Populus trichocarpa]
 gi|222839702|gb|EEE78025.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 129/347 (37%), Gaps = 33/347 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L +T
Sbjct: 172 MLRRQSLRQDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ +  +E L          Y      +   
Sbjct: 232 RKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           V   S++I  +        LH++ GR GR       I        + 
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTSDDDRM 390


>gi|325915753|ref|ZP_08178055.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538017|gb|EGD09711.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 461

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 133/372 (35%), Gaps = 37/372 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q+ AI  +L           +     G+GKT    + +   +    Q        
Sbjct: 23  TPTAIQQQAIPLVLAGHD------LLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPRKP 76

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+ P   LA Q ++ ++ Y++  +I   +I G +   ++   L R       ++I  
Sbjct: 77  RALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRR----GVDLLIAC 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D I+   + L  ++        + L +    +   +L        +TL+ ++  +
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFE 192

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
            +I ++      R P++  + P N + E I      +   +K   +   + +        
Sbjct: 193 ENIKQLA-LEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLV 251

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   ++     E      A IHG  S   +   +  FK G   +L+AT +   GID
Sbjct: 252 FARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +     +I  +        +H++ GR GR       I L     +K     + +L     
Sbjct: 312 IDQLPKVINYDLPMVAEDYVHRI-GRTGRNGSTGEAISLVAQDEAKLLRQIVRMLG---- 366

Query: 617 GFLIAEEDLKQR 628
                  D++ R
Sbjct: 367 ------RDVEIR 372


>gi|294340821|emb|CAZ89216.1| Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Thiomonas sp. 3As]
          Length = 666

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 84/434 (19%), Positives = 153/434 (35%), Gaps = 51/434 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q + I  +L           + Q   G+GKT    + + A ++      QA+++A
Sbjct: 29  TPSPIQAATIPPLLAGRDV------LGQAQTGTGKTAAFALPILAKIDCNARHTQALVLA 82

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y  +     V  I G      +  +L+R     AH+++GT     
Sbjct: 83  PTRELAIQVAEAFARYAAHLPGFNVLPIYGGQSYVPQLASLKR----GAHVVVGTPGRII 138

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVL 437
           D ++   L L  +        DE  R G    +   L +      V L +AT       +
Sbjct: 139 DHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQVALFSATMPSAIRRI 198

Query: 438 TSLGDIDISKITEKPAGRKPIK-----TVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
                 D  +IT K A            ++  ++++D +   L+V   EG   +      
Sbjct: 199 AQTYLRDPQEITIKAATTTATHIQQRYWMVSGLHKLDALTRILEVEPFEGMIIFA----- 253

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +   E           + A ++G +    +E ++   K+G   +L+AT V  
Sbjct: 254 ------RTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATDVAA 307

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   S ++  +      + +H++ GR GR       IL   P             +
Sbjct: 308 RGLDVERISHVVNYDIPTDTESYVHRI-GRTGRAGRSGDAILFVTPRERHLLRAIERATR 366

Query: 613 NTEDGFLI----AEEDLKQRKEGEILGI--KQSGMPKFL----IAQPELHDSLLEIARKD 662
                  +    A  D +  +  E +    +Q G+  +       + E     +EIA   
Sbjct: 367 QPITQMQLPSTEAVNDSRISRFMERITEAREQEGLEDYQRLVERYEQEFDIPAIEIAAAL 426

Query: 663 AKHILTQDPDLTSV 676
           A+ +    P L   
Sbjct: 427 ARMVQGNKPLLMRP 440


>gi|50420221|ref|XP_458643.1| DEHA2D04048p [Debaryomyces hansenii CBS767]
 gi|74602737|sp|Q6BT27|FAL1_DEBHA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49654310|emb|CAG86782.1| DEHA2D04048p [Debaryomyces hansenii]
          Length = 399

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 77/355 (21%), Positives = 126/355 (35%), Gaps = 37/355 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +P+  Q  AI  I+           I Q   G+GKT    I M   ++      QA+I++
Sbjct: 48  APSAIQSRAIMQIISGKDT------IAQAQSGTGKTATFSIGMLEVIDTKSKDCQALILS 101

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ    +K       +      G        K L++       I+ GT     D
Sbjct: 102 PTRELAQQIQSVVKHLGDYMNVHTHACIGGTHVGEDIKKLQQGQ----QIVSGTPGRVVD 157

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        IL   DE    G ++++            V++++AT     L +T
Sbjct: 158 MIKRRNLATRNIKMMILDEADELMTKGFKEQIYEIYRYLPPGVQVVVVSATLSREVLEVT 217

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
                D  KI  K      + IK   I   + D   + L  +       +A   C     
Sbjct: 218 GKFTTDPVKILVKRDDITLEGIKQYHIQCEKEDWKFDTLCDLYDSLTITQAVIFCNT--- 274

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V       +    ++  +HG M   +++S+M+ F+ G  ++LI+T V   G
Sbjct: 275 ------KVKVNWLTDQMKKANFTVVAMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARG 328

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           IDV   S++I  +        +H++ GR GR       I L              
Sbjct: 329 IDVQQVSLVINYDLPTDKENYVHRI-GRSGRFGRKGVAINLVTKEDVDELRDIER 382


>gi|15639757|ref|NP_219207.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|3323078|gb|AAC65738.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum str.
           Nichols]
          Length = 649

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 124/344 (36%), Gaps = 31/344 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           PT  Q +AI  +L           I +   G+GKT    + +   + +      A+++ P
Sbjct: 69  PTPIQAAAIPRLLAG-----DANIIAKARTGTGKTAAFGLPLIQELGSPCEHPGALVLVP 123

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q    +          +  + G +  A + + LE+       II+GT     D 
Sbjct: 124 TRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNLEQGGE----IIVGTTGRVIDH 179

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTS 439
           I+   L        IL   DE    G  + ++           VL+ +AT   + L + S
Sbjct: 180 IERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVLMFSATMPRQILSIAS 239

Query: 440 LGD-IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                        P   +P+    + + R  + IE L  ++      Y +          
Sbjct: 240 TFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDVSDNFYGLVF-------C 292

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             ++  +      +     +A +HG +    +E +++ F+    ++L+AT V   GID+ 
Sbjct: 293 QTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGIDIE 352

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
             + ++  +  H      H++ GR GR       I    P  ++
Sbjct: 353 GITHVVNYSIPHDSATYTHRV-GRTGRAGSQGIAISFVRPHETR 395


>gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 571

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 142/418 (33%), Gaps = 48/418 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 107 TPTPIQAQAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPQASTSASPARH 160

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 161 PVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRR----GVEILI 216

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATP 430
            T     D +Q           L+L   D     G    L+            LL +AT 
Sbjct: 217 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 276

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    +    +  ++  +   D+    ++++   G K   +
Sbjct: 277 SPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHSAVVQLLRDRGLKQVIV 336

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      + IHG  S +++   +D+FK G  + L+AT
Sbjct: 337 F--------CNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVAT 388

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+V+   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 389 DVAARGLDIVELPAVINFDLPFNAEDYVHRI-GRTGRAGATGDALSLCSPNERKQLADIE 447

Query: 609 SVLKNTEDGFLIA-----EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
            ++K   +   +A          +R  GE  G +          + E  +     AR+
Sbjct: 448 KLIKRPLEVQTLALDKPSRHRHDERG-GERAGERSGERAGERGGRRERDEHRGASARR 504


>gi|143454263|sp|Q5N7W4|RH30_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 30
          Length = 666

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 139/378 (36%), Gaps = 37/378 (9%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           N      Q I ++    PT  Q       L+       M+ I Q   GSGKTL  L+   
Sbjct: 257 NFPDYCMQAIAKSGFVEPTPIQSQGWPMALKG----RDMIGIAQ--TGSGKTLSYLLPGL 310

Query: 316 AAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             V A        G   +I+AP   LA Q  +   K+   ++     I G  P+  + + 
Sbjct: 311 VHVGAQPRLEQGDGPIVLILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRD 370

Query: 368 LERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
           L R       I+I T     D ++       ++  +++DE  R          +K     
Sbjct: 371 LRR----GVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRK----- 421

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            ++    P  +TL  ++    ++  +  +         +  P  + +  I+++  V+SE 
Sbjct: 422 -IVAQIRPDRQTLYWSATWPREVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEH 480

Query: 483 KKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +K   +   + +  +          +   ++              IHG  +  +++ V+ 
Sbjct: 481 EKYPRLSKLLSDLMDGSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLA 540

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   ++ AT V   G+DV D   +I  +        +H++ GR GR     +    
Sbjct: 541 EFKSGKSPIMAATDVAARGLDVKDIKCVINFDFPTTLEDYIHRI-GRTGRAGASGTAFTF 599

Query: 596 YHPPLSKNSYTRLSVLKN 613
           +    +K S   + +L+ 
Sbjct: 600 FTLSNAKFSRNLVKILRE 617


>gi|24375521|ref|NP_719564.1| ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
 gi|24350394|gb|AAN57008.1|AE015835_4 ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
          Length = 623

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 73/367 (19%), Positives = 138/367 (37%), Gaps = 38/367 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L  + +  PT  Q ++I  ++           + Q   G+GKT    + +   V  +   
Sbjct: 21  LDELGYEKPTPIQSASIDPLMAGKD------ILGQAQTGTGKTGAFALPLLNKVTSQTTP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E    Y +  +    + I G      +  AL+R       +I+G
Sbjct: 75  QILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKR----GPQVIVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLL--MTATPI 431
           T     D ++   L        +L   DE  + G    ++   + T P   L   +AT  
Sbjct: 131 TPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQLALFSATMP 190

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            +   +    L +     I         I+   + +++ +++   ++V+  E  +   I 
Sbjct: 191 EQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGIIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +            VE    L     +S + +HG M+   +E  ++  KNG   +LIAT 
Sbjct: 251 VRTRNS-------CVELAEKLEARGYAS-SPLHGDMNQQARERAVEQLKNGKLDILIATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV     ++  +  +   A +H++ GR GR       IL      S+      +
Sbjct: 303 VAARGLDVERIGHVVNYDIPYDTEAYVHRI-GRTGRAGRTGMAILFVT---SREMRMLRT 358

Query: 610 VLKNTED 616
           + + T  
Sbjct: 359 IERATNS 365


>gi|332072754|gb|EGI83235.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17545]
          Length = 524

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/362 (20%), Positives = 133/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLQDIETLILDEADEMLNMGFLEDIEA-------IISRVPENRQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRS 502
            K       ++P    I       E++++  + + E +K   +   ++  +      F  
Sbjct: 188 IKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGR 247

Query: 503 VVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVSPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|327554931|gb|AEB00819.1| vasa-like protein [Marsupenaeus japonicus]
          Length = 698

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/374 (17%), Positives = 133/374 (35%), Gaps = 48/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----------- 321
           PT  Q+  I ++   M+ ++ M        GSGKT   L+ M   +              
Sbjct: 279 PTPVQKYTIPNV---MNGRDIM---GCAQTGSGKTAAFLLPMLHHILDNNCPSHAFEEPA 332

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               +++ P   LA Q     +K++  +     +  G     H+ K      H   HI++
Sbjct: 333 QPTGLVICPTRELAIQIMREARKFSHGSVAKCCVAYGGAAGFHQLKT----MHNGCHILV 388

Query: 381 GTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRL--------KLTQKATAPHVLLMT 427
            T     D ++     +  L  +++DE  R      L         +T   T   + LM 
Sbjct: 389 ATPGRLLDFVEKGKVVFSNLKYLVLDEADRMLDMGFLSSIKTVINHITMTPTEERITLMF 448

Query: 428 ATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV--IERLKVVLSEG 482
           +   P   + L    L +     +    A    +K  ++ +++ D+   +  +   +   
Sbjct: 449 SATFPNEIQELASVFLNNYLFVVVGSVGAANTDVKQEVLSVSKFDKKAKLVEMCEEILIN 508

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            +   I   +E+K+ ++F        S           +HG      +E  + +F+ G  
Sbjct: 509 SEDEKILVFVEQKRVADF------VGSYLCEKKFRATTMHGDRFQAQREQALAAFRTGVH 562

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+    +++  +        +H++ GR GR       I  Y   +  
Sbjct: 563 NILVATAVAARGLDIKGIGVVVNYDLPKEIDEYVHRI-GRTGRLGNRGMSISFYDEEVDT 621

Query: 603 N-SYTRLSVLKNTE 615
             +   + VL   E
Sbjct: 622 CLTKDLVKVLSEAE 635


>gi|302685145|ref|XP_003032253.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
 gi|300105946|gb|EFI97350.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
          Length = 488

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/366 (21%), Positives = 139/366 (37%), Gaps = 44/366 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q  +    L        ++ I Q   GSGKT+   +     + A        G  
Sbjct: 83  APTAIQCQSWPMAL----SGRDVVAIAQ--TGSGKTISFALPAMLHINAQPLLSPGDGPI 136

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LA Q  +   K+  N++I    I G  P+  + + L+R       ++I T 
Sbjct: 137 ALVLAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRDLQR----GVEVVIATP 192

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++  K        L++   D     G + +++    Q       L+ +AT    
Sbjct: 193 GRLIDMLETGKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLMFSATWPKD 252

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            + L    L D     I   E  A      I  V     + +++I+ L  + SE  K   
Sbjct: 253 VQKLANDFLKDFIQVNIGSMELAANHNITQITEVCSDFEKRNKLIKHLDQISSENAKVLI 312

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        R   +    L +    ++AI HG     +++ V+  FK G   +LIA
Sbjct: 313 FV--------GTKRVADDITRYLRQDGWPALAI-HGDKEQRERDWVLGEFKAGRSPILIA 363

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +  +     +H++ GR GR     +    +    +K++   
Sbjct: 364 TDVASRGLDVKDIGYVINYDFPNNCEDYIHRI-GRTGRAGAKGTAYTYFTTENAKSAREL 422

Query: 608 LSVLKN 613
           +S+L  
Sbjct: 423 VSILTE 428


>gi|291060131|gb|ADD72866.1| dead-box ATP-dependent rna helicase ydbr [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 644

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 124/344 (36%), Gaps = 31/344 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           PT  Q +AI  +L           I +   G+GKT    + +   + +      A+++ P
Sbjct: 64  PTPIQAAAIPRLLAG-----DANIIAKARTGTGKTAAFGLPLIQELGSPCEHPGALVLVP 118

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q    +          +  + G +  A + + LE+       II+GT     D 
Sbjct: 119 TRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNLEQGGE----IIVGTTGRVIDH 174

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTS 439
           I+   L        IL   DE    G  + ++           VL+ +AT   + L + S
Sbjct: 175 IERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVLMFSATMPRQILSIAS 234

Query: 440 LGD-IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                        P   +P+    + + R  + IE L  ++      Y +          
Sbjct: 235 TFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDVSDNFYGLVF-------C 287

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             ++  +      +     +A +HG +    +E +++ F+    ++L+AT V   GID+ 
Sbjct: 288 QTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGIDIE 347

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
             + ++  +  H      H++ GR GR       I    P  ++
Sbjct: 348 GITHVVNYSIPHDSATYTHRV-GRTGRAGSQGIAISFVRPHETR 390


>gi|260770091|ref|ZP_05879024.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
 gi|260615429|gb|EEX40615.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
          Length = 412

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 125/333 (37%), Gaps = 22/333 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
            PT  Q  AI ++L           +   + GSGKTL   + +   + A  Q  A+++ P
Sbjct: 22  QPTDIQALAIPELLAGKDV------LALANTGSGKTLAYALPLLDKLHANPQQKALVLVP 75

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I +  Q  ++    + G + +A +++AL        HI++ T     D 
Sbjct: 76  TRELAIQVSEAINQVGQALELNAVCLCGGVDKAQQQQALAT----NPHILVATTGRLVDL 131

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +  + L L  +         + L +       ++ + TA    R   + S    +  K  
Sbjct: 132 VN-HGLDLSHIHTLILDEADRLLDMGFWPDVQNIAMQTAN--QRQTAMFSATFSEALKEK 188

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------RSV 503
            K     P +      N  ++ I     ++++G K   +   I++   +        +  
Sbjct: 189 AKQLMHAPKQVAAHQENSTNQDITETLFLVNKGSKTKALIELIQQNAWTRVLVFIGAKEN 248

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +           S   +HG  S  ++E  +  FK+G   +LIAT ++  GI +    ++
Sbjct: 249 ADGLAKKLNKAGVSTTALHGNKSQDEREEALAQFKSGQVNVLIATDLLARGIHIEQLPVV 308

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           I           +H++ GR  R  E    + L 
Sbjct: 309 INFELPMHAETYVHRV-GRTARAGEQGVAMSLV 340


>gi|159463584|ref|XP_001690022.1| DEAD-box RNA helicase [Chlamydomonas reinhardtii]
 gi|158284010|gb|EDP09760.1| DEAD-box RNA helicase [Chlamydomonas reinhardtii]
          Length = 513

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 130/362 (35%), Gaps = 37/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           I   + GSGKTL  L+     + A        G  
Sbjct: 131 EPTPIQCQGWPMALLGRD------LIGLAETGSGKTLAYLLPAVVHINAQPYLQSGDGPI 184

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +  +++  +++I   ++ G  P+  + + L     G   I+I T 
Sbjct: 185 VLVLAPTRELAVQIQQECQRFGASSRIKNTVVYGGAPKGPQARDLR----GGVEIVIATP 240

Query: 384 ALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D +            L+L   D     G + +++    Q       LL +AT    
Sbjct: 241 GRLIDMLDSRITNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLLWSATWPKE 300

Query: 434 T--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              +    L D     I             ++ +        RL+ +L        I   
Sbjct: 301 VQAIARDFLKDPYQVIIGSPDLKANHNIRQVVEMVEGFAKYPRLRKLLDGEMDGRRILIF 360

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +E K     R   E    L      ++ + HG  S  +++ V+  FKNGT  +++AT V 
Sbjct: 361 VETK-----RGCDELVRQLRTDGYPALGL-HGDKSQQERDWVLQEFKNGTHPIMLATDVA 414

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D  +++  +        +H++ GR GR     +    +    ++ +   + V+
Sbjct: 415 ARGLDVKDIKVVVNYDMPKTAEDYVHRI-GRTGRAGATGTAYSFFTNGDARLARQVVDVM 473

Query: 612 KN 613
           + 
Sbjct: 474 QE 475


>gi|50294444|ref|XP_449633.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661035|sp|Q6FJG1|FAL1_CANGA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49528947|emb|CAG62609.1| unnamed protein product [Candida glabrata]
          Length = 399

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 129/358 (36%), Gaps = 34/358 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P+  Q  AI  I+           I Q   G+GKT    I M  A++      QA++++
Sbjct: 45  APSAIQSRAITQIISGKDV------IAQAQSGTGKTATFTIGMLQAIDLKKHDLQALVLS 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +    +TG          L++I      +I GT     D
Sbjct: 99  PTRELAAQIGKVVTNLGDYMNVKAYAMTGGKTMKD---DLKKIQKHGCQVISGTPGRVLD 155

Query: 389 SIQYY--------KLILVIVDE--QHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLV 436
            I+           L+L   DE      G + ++            V++++AT  P  L 
Sbjct: 156 MIKRRLIETRHVQILVLDEADELLSDTLGFKHQIYDIFTKLPRTSQVVVVSATMSPEILE 215

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +T     D  KI  K      + IK   + + + +   + L          Y      + 
Sbjct: 216 ITKKFMNDPVKILVKRDEITLEGIKQYYVNVEKEEWKFDTL-------CDIYDSLTITQC 268

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +  V+      +    ++  +HG M   +++ VM+ F+ G  ++LI+T V   G
Sbjct: 269 VIFCNSKKKVDWLAHKLKQSNFAVISMHGDMKQDERDRVMNEFRTGQSRVLISTDVWARG 328

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           IDV   S++I  +        +H++ GR GR       I       +          K
Sbjct: 329 IDVQQVSLVINYDLPEITENYVHRI-GRSGRFGRKGVAINFLTKIDASRMKEIEKYYK 385


>gi|15222526|ref|NP_174479.1| STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP binding / ATP-dependent
           helicase/ helicase/ nucleic acid binding [Arabidopsis
           thaliana]
 gi|75333350|sp|Q9C551|RH5_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 5
 gi|12321302|gb|AAG50723.1|AC079041_16 p68 RNA helicase, putative [Arabidopsis thaliana]
 gi|12321459|gb|AAG50784.1|AC074309_1 RNA helicase, putative [Arabidopsis thaliana]
 gi|19347812|gb|AAL86356.1| putative p68 RNA helicase [Arabidopsis thaliana]
 gi|21436171|gb|AAM51373.1| putative p68 RNA helicase [Arabidopsis thaliana]
 gi|332193302|gb|AEE31423.1| DEAD-box ATP-dependent RNA helicase 5 [Arabidopsis thaliana]
          Length = 537

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 134/370 (36%), Gaps = 46/370 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
            P+  Q      +L           I     GSGKTL   I     V             
Sbjct: 136 KPSPIQSHTWPFLLDGRD------LIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKK 189

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
                ++++P   LA Q  + +++  +   +    + G   +  +  A+         I+
Sbjct: 190 VNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRS----GVDIV 245

Query: 380 IGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           IGT    +D I+   L L  V     DE  R        L      P   +++ T   R 
Sbjct: 246 IGTPGRLRDLIESNVLRLSDVSFVVLDEADRM-------LDMGFEEPVRFILSNTNKVRQ 298

Query: 435 LVL-TSLGDIDISKITEKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWICPQ 491
           +V+ ++   +D+ K+ ++     PIK +I  ++     +V++ ++V+    +    I   
Sbjct: 299 MVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALL 358

Query: 492 IEEKKESNFRS--------VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            +  K    R           ER     +        IHG  +  ++   +  FK G+C 
Sbjct: 359 EKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCP 418

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LL+AT V   G+D+ D  ++I           +H++ GR GR  +       + P     
Sbjct: 419 LLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRI-GRTGRAGKKGVAHTFFTPLNKGL 477

Query: 604 SYTRLSVLKN 613
           +   ++VL+ 
Sbjct: 478 AGELVNVLRE 487


>gi|319783363|ref|YP_004142839.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169251|gb|ADV12789.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 474

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 140/361 (38%), Gaps = 39/361 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            P   Q  AI   ++       +  I Q   GSGKT    + + + +            +
Sbjct: 38  EPKPIQAQAIPPQMEG----RDIFGIAQ--TGSGKTAAFALPILSKIIALGTKRRPKTAR 91

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  + IK   +   +   ++ G + +  + K +         I+I T 
Sbjct: 92  ALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVAP----GVDILIATP 147

Query: 384 ALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLMTAT-PIPRTLVL 437
               D ++   L+L       +DE  R      +   ++       +  AT P  +T++ 
Sbjct: 148 GRLTDLVREGDLMLADTKWLVLDEGDRMLDMGFINDVKR-------IAKATAPDRQTVLF 200

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I+++  K   + PI+  + P +     I +  V     +K   +   + ++  
Sbjct: 201 SATMPNEIAELA-KGLLKNPIRVEVAPQSTAAAEIVQGVVFARTKQKRQVLSTMLADETM 259

Query: 498 S------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   +R     E      A+IHG  S   ++  ++ F++G+ ++L+AT + 
Sbjct: 260 KSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFRDGSVRILVATDIA 319

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV   S ++  +      + +H++ GR GR       I L  P  +        ++
Sbjct: 320 ARGIDVPGISHVVNFDLPDEAESYVHRI-GRTGRNGMDGIAITLCDPSENSKLRQVERII 378

Query: 612 K 612
           +
Sbjct: 379 R 379


>gi|262381688|ref|ZP_06074826.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_33B]
 gi|262296865|gb|EEY84795.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_33B]
          Length = 421

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 126/347 (36%), Gaps = 37/347 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           +PT  Q  AI  + Q          +     G+GKT    I +   +        + G +
Sbjct: 23  TPTPIQSEAIPIVSQGYD------LLGCAQTGTGKTAAFSIPIIQRLYLQKKKGYKRGIK 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  E    Y +   +   +I G + Q  + +ALER       I+I T 
Sbjct: 77  ALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEALER----GIDILIATP 132

Query: 384 ALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D I         L   ++DE  R      +   +       +L       ++L  +
Sbjct: 133 GRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIK------RILPLLPKKRQSLFFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-- 496
           +    +I ++       +P K  + P +   + I++    + + +K   +   +E  +  
Sbjct: 187 ATMPPEIERLAGT-ILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINLLKSLLENPELE 245

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  +   ++   +          IHG  S   ++  + +FK+ T ++LIAT +  
Sbjct: 246 SVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRVLIATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            GIDV   + +I     +     +H++ GR GR              
Sbjct: 306 RGIDVDHLTHVINYELPNVPETYVHRI-GRTGRAGREGVAFSFCDAE 351


>gi|240128393|ref|ZP_04741054.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268686791|ref|ZP_06153653.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268627075|gb|EEZ59475.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 462

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 128/347 (36%), Gaps = 45/347 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEG------CDIMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++AP   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTSFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET-------IVEATPADRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEK 495
           ++  D  + K+  K        + II + R+D    IE   +   + +    +   I   
Sbjct: 188 SATWDGAVGKLARK----LTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRD 243

Query: 496 KESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +        +++ E           +   +HG M    +   +   + G CK+L+AT
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|70725957|ref|YP_252871.1| hypothetical protein SH0956 [Staphylococcus haemolyticus JCSC1435]
 gi|123660708|sp|Q4L7W0|Y956_STAHJ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SH0956
 gi|68446681|dbj|BAE04265.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 503

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 134/350 (38%), Gaps = 37/350 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L  + F  PT  Q+ +I   L+          + Q   G+GKT    I +   V  ++G 
Sbjct: 17  LEAMGFKEPTPIQKDSIPYTLEGKD------ILGQAQTGTGKTGAFGIPLIEKVVGQSGV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+AP   LA Q  E ++++++   + V  + G MP   + KAL+R       I++GT
Sbjct: 71  QALILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALKR----GPQIVVGT 126

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +          + LIL   DE    G    ++                   +T
Sbjct: 127 PGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQ--------RQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I  + ++   + P     +     D  I+    ++ E +K       ++ 
Sbjct: 179 MLFSATMPKAIQTLVQQFM-KSPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +      F     R + L     S       +HG ++   +  V+  FKN    +L+AT
Sbjct: 238 HQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|329114670|ref|ZP_08243429.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
 gi|326696150|gb|EGE47832.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
          Length = 637

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 125/358 (34%), Gaps = 41/358 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQG--DVGSGKTLVALIAMAAAVEAG------GQA 324
           PT  Q  AI  IL        M R + G    G+GKT    + M   +          ++
Sbjct: 176 PTPIQAQAIPAIL--------MARDVMGVAQTGTGKTASFTLPMLEILADSRARARMPRS 227

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E    Y +  ++   ++ G    A +++ L R       ++I T  
Sbjct: 228 LILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEVLNR----GVDVLIATPG 283

Query: 385 LFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIP 432
              D  +   L+L       +DE  R      +   +K           LL +AT  P  
Sbjct: 284 RLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNRQTLLFSATMAPTI 343

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R L  T L       +  + +    I T I+ ++   +     +++     +   +    
Sbjct: 344 RKLADTFLHSPKEITVARQSSVATTITTGIVVVDEYSKRETLRQLLKDPALQNAIVF--- 400

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N +  V+           S A +HG +    + S ++ FKN   K+L+ + V  
Sbjct: 401 -----CNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVCSDVAA 455

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
            GID+   S +   +        +H++ GR GR         +  P     +     +
Sbjct: 456 RGIDIGGLSHVFNFDLPFHAEDYVHRI-GRTGRAGREGHAYSIATPYDKALAEAIEKL 512


>gi|262403377|ref|ZP_06079937.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC586]
 gi|262350876|gb|EEZ00010.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC586]
          Length = 464

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 127/344 (36%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L           +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQLQAIPAVLAGKDV------MAAAQTGTGKTAGFTLPILELLAKGPKVRANKVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + +  Y ++  +   ++ G +    + +   R+  G A I++ T  
Sbjct: 77  LILTPTRELAAQIQDNVLIYGRHLPLSSAVVFGGVKVNPQMQ---RMCKG-ADILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ +L ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRK-------ILKLLPEKRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                  +   K     P++  + P N     +E+        KK   +    +E     
Sbjct: 186 ATFSAEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLAKEGNWQQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R  +       + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GID+     ++           +H++ GR GR  E+   I L  
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRI-GRTGRAGEVGKAISLVS 348


>gi|225437591|ref|XP_002277419.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743992|emb|CBI36962.3| unnamed protein product [Vitis vinifera]
          Length = 771

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 137/384 (35%), Gaps = 45/384 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            PT  Q  A   +L           I     GSGKT   ++ M   +        E G  
Sbjct: 248 KPTPIQCQAFPIVLSGRD------IIGIAKTGSGKTAAFVLPMIVHIMDQPELAKEEGPI 301

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            VI AP   LA Q Y   KK+ +   I V  I G M +  + K L+        I+I T 
Sbjct: 302 GVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQFKELKSGCE----IVIATP 357

Query: 384 ALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D I+   L ++     ++DE  R          +             P  +TL+ +
Sbjct: 358 GRLIDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIR------PDRQTLLFS 411

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICP----QIE 493
           +     + K+  +     P++  +  +   +E I ++  V+    +K  W+       I+
Sbjct: 412 ATMPRKVEKLA-REILTDPVRVTVGEVGMANEDITQVVQVIPSDAEKLPWLLDKLPGMID 470

Query: 494 EKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +     F S     + +          IA +HG      +  ++  FK+G   +LIAT V
Sbjct: 471 DGDVLVFASKKATVDEIESQLGQKGLKIAALHGDKDQASRMDILQKFKSGIYHVLIATDV 530

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS-CILLYHPPLSKNSYTRLS 609
              G+D+     ++  +      A +H++ GR GR  +       L     ++ +   + 
Sbjct: 531 AARGLDIKSIKSVVNFDIARDMDAHVHRI-GRTGRAGDKDGTAYTLITHKEARFAGELVG 589

Query: 610 VLKNTEDG-----FLIAEEDLKQR 628
            L             +A +D + R
Sbjct: 590 SLIAAGQNVPMELMDLAMKDGRFR 613


>gi|84490017|ref|YP_448249.1| helicase [Methanosphaera stadtmanae DSM 3091]
 gi|84373336|gb|ABC57606.1| predicted helicase [Methanosphaera stadtmanae DSM 3091]
          Length = 583

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/356 (20%), Positives = 129/356 (36%), Gaps = 36/356 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
               QK + ++ F   +  Q  AI  IL             Q   G+GKT    I +   
Sbjct: 12  SPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTG------QAQTGTGKTAAFGIPLLEN 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAH 373
           ++      QA+I+ P   LA Q  E ++K +     I V  + G  P   + KAL++   
Sbjct: 66  IDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKALQK--- 122

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHV 423
               IIIGT     D I    L L  +        DE    G ++ ++            
Sbjct: 123 -GVQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQF 181

Query: 424 LLMTATPIPRTLVLTSLG--DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           LL +AT     L L      + +I K+T+       ++     +    ++    +++   
Sbjct: 182 LLFSATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKEDMKLELLSRLLDLH 241

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 +          N +  V++  S  +        +HG ++   ++ VM  FK G 
Sbjct: 242 DFDLSLVF--------CNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGN 293

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            ++L+AT V   GIDV     +   +  +     +H++ GR GR  +         
Sbjct: 294 IEILVATDVAARGIDVGGVEAVFNFDIPNDNEYYVHRI-GRTGRAGKTGKAYSFVS 348


>gi|50312211|ref|XP_456137.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660243|sp|Q6CIV2|DBP2_KLULA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49645273|emb|CAG98845.1| KLLA0F23716p [Kluyveromyces lactis]
          Length = 554

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 133/366 (36%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           I     GSGKTL   +     + A        G  
Sbjct: 135 KPTGIQCQGWPMALSGRD------MIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPI 188

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +   K+  +++I    + G +P++ + + L+R       I+I T 
Sbjct: 189 VLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQR----GVEILIATP 244

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 245 GRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 304

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYW 487
            + L    L D    +I           T I+ +     + D + + L+    +      
Sbjct: 305 VKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKII 364

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I         S  R+  E  + L      ++AI HG  +  +++ V+  F++G   +++A
Sbjct: 365 IF-------ASTKRTCDEITSYLRTEGWPALAI-HGDKAQNERDWVLAEFRSGRSPIMVA 416

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV   + +I  +        +H++ GR GR     + I  +           
Sbjct: 417 TDVAARGIDVKGINYVINYDMPGNIEDYVHRI-GRTGRAGSTGTAISFFTEGNKSLGAAL 475

Query: 608 LSVLKN 613
           + +++ 
Sbjct: 476 IKIMRE 481


>gi|194440585|dbj|BAG65665.1| vasa [Gryllus bimaculatus]
          Length = 650

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 134/369 (36%), Gaps = 40/369 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ AI  I   MS ++ M        GSGKT   L+ +   + +  +        
Sbjct: 236 KPTPIQKHAIPII---MSGRDLM---ACAQTGSGKTAAFLLPIINVLLSDPRDLILTAEH 289

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               A+I++P   L  Q Y   +K+   + I   +  G     H+ + + +      HI+
Sbjct: 290 CEPHAIIVSPTRELTLQIYSEARKFAHGSIIKAVVTYGGTAAYHQAQQVMK----GCHIL 345

Query: 380 IGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T     D +   ++    V     DE  R      +   +K        M  T   +T
Sbjct: 346 VATPGRLLDFVNRGRISFASVRFVVLDEADRMLDMGFMPDIEKMMNHPT--MVPTGERQT 403

Query: 435 LVLTSLGDIDISKITEKP-AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           L+ ++    +I ++  K  +    +   I+     D  +++    ++  +K   +   ++
Sbjct: 404 LMSSATFPEEIQRLAGKFLSDYLFVAVGIVGGACTD--VDQKFYQVTRFEKRPKLVELLK 461

Query: 494 EKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           E+           +   +   +           IHG     ++E  +  FK+G   +L+A
Sbjct: 462 EEGGDKTLVFVEMKRTADFIAAYLSEQNFPTTSIHGDRMQREREEALADFKSGQMTILVA 521

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN-SYT 606
           T V   G+D+ + + ++  +        +H++ GR GR          Y P      +  
Sbjct: 522 TAVAARGLDIKNVAHVVNYDLPKSIDEYVHRI-GRTGRVGNRGKATSFYDPEADAPIARD 580

Query: 607 RLSVLKNTE 615
            + +L   E
Sbjct: 581 LVKILNQAE 589


>gi|163838674|ref|NP_001106217.1| eukaryotic initiation factor 4A-III [Bombyx mori]
 gi|110376569|gb|ABG73410.1| eIF4AIII protein [Bombyx mori]
          Length = 405

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 135/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+ +I  I++          I Q   G+GKT    I++   ++      Q +I++
Sbjct: 54  KPSAIQQRSILPIVKGRDV------IAQAQSGTGKTATFSISILQTLDTTLRETQVLILS 107

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        +      G        + L+       H++ GT     D
Sbjct: 108 PTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQ----HVVSGTPGRVFD 163

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+           L+L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 164 MIRRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 223

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    D  +I  K      + IK   + + R +   + L  +       +A   C     
Sbjct: 224 SKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT--- 280

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+      +    +++ +HG M   +++++M  F++G  ++LI T V   G
Sbjct: 281 ------KRKVDWLTQKMQEANFTVSSMHGDMPQKERDNIMKEFRSGQSRVLITTDVWARG 334

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV   S++I  +  +     +H++ GR GR       I        +            
Sbjct: 335 IDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQ 393

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 394 IDEMPMNVADL 404


>gi|195170555|ref|XP_002026077.1| GL16096 [Drosophila persimilis]
 gi|194110957|gb|EDW33000.1| GL16096 [Drosophila persimilis]
          Length = 554

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 132/379 (34%), Gaps = 46/379 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q  A    L           +     GSGKTL  ++     +          G  
Sbjct: 125 EPTPIQAQAWPIALSG------HNLVGIAKTGSGKTLAFILPAILHINGQQPLQRGEGPI 178

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ       +  +  +    + G  P++ +   L+R       III T 
Sbjct: 179 ALVLAPTRELAQQIQSVANDFGSSAFVRNTCVFGGAPRSKQASDLKR----GVEIIIATP 234

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D +Q           L+L   D     G   Q R  L Q      +L+ +AT    
Sbjct: 235 GRLLDFLQSGATNLRRCTYLVLDEADRMLDMGFEPQIRKVLGQIRPDRQILMWSATWPKE 294

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN------RIDEVIERLKVVLSEGKKAYW 487
              L         +++     R  I+T+           R +  I +   V  E +K+  
Sbjct: 295 VRQLAEDFLGSYIQVSRVQILRIQIETLSARSTSGPWSCRPNHNIRQYVEVCGEHEKSAK 354

Query: 488 ICPQIEEKKESNF-----------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           +   +    +              +   +        F  S+  IHG  S +D++SV++ 
Sbjct: 355 LKDLLSHIYDQAHAPGKIIIFVATKKKTDELARFINAFGVSVGSIHGDKSQMDRDSVLND 414

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F++G   +L+AT V   G+DV     +I  +        +H++ GR GR     +    +
Sbjct: 415 FRSGRANILVATDVAARGLDVDGIKYVINFDYPQSSEDYIHRI-GRTGRKLSKGTSYAFF 473

Query: 597 HPPLSKNSYTRLSVLKNTE 615
               ++ +   + +L+   
Sbjct: 474 TRKNARCARALIDILREAN 492


>gi|261868715|ref|YP_003256637.1| cold-shock deAd box protein a [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414047|gb|ACX83418.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 595

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 156/423 (36%), Gaps = 49/423 (11%)

Query: 267 RNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F +P+  Q+  I  +L+          +     GSGKT    + + A +   E   
Sbjct: 17  SDLGFQTPSPIQQICIPHLLEGRDV------LGMAQTGSGKTAAFALPILAKIDPNEKHP 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  +++ +    I +  + G      R     R     A +++G
Sbjct: 71  QLLVMAPTRELAIQVADACEQFMKYAKGINIVTLYGG----QRYDIQLRALKQGAQVVVG 126

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I+   L        +L   DE  R G  + ++        H          +
Sbjct: 127 TPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEH---------HQ 177

Query: 434 TLVLTSLGDIDISKITEKPA-GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           T + ++     I +IT++     + IK      +  D       V       A     ++
Sbjct: 178 TALFSATMPEPIRRITKRFMKDPQEIKIKATQQSAPDIAQSCWYVHGFRKNDALLRFLEV 237

Query: 493 EEKKESNFRSVVER----FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           E+   +   +  +        L E      A ++G M+   +E  +D  ++G+  +++AT
Sbjct: 238 EDFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIVVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+   S+++  +      + +H++ GR GR       +L   P   +      
Sbjct: 298 DVAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNVE 356

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGI-KQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            ++K   +   +           E+L   ++      +  Q E HD  LE+ R+  + + 
Sbjct: 357 HLIKKNIEEVELPNH--------EVLQACRRKKFKDKITTQLEHHD--LELYRQLLEDMF 406

Query: 668 TQD 670
           T D
Sbjct: 407 TAD 409


>gi|292670294|ref|ZP_06603720.1| ATP-dependent RNA helicase DeaD [Selenomonas noxia ATCC 43541]
 gi|292648025|gb|EFF65997.1| ATP-dependent RNA helicase DeaD [Selenomonas noxia ATCC 43541]
          Length = 425

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/351 (20%), Positives = 130/351 (37%), Gaps = 22/351 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE AI  +            I Q   G+GKTL  L+ +   ++  G   QA+++A
Sbjct: 24  EPTPVQEQAIPPMRAGRDV------IAQAQTGTGKTLSFLLPLLEKIKPQGTVAQALVIA 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q     +   +   I   +I G      +++ L R    +  ++IGT     D
Sbjct: 78  PTRELAIQIARVAEPLGEPLGIGTIVIYGGADIERQKEKLRR----RPQLVIGTPGRLLD 133

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++   L L  V++       + LK+        +L   A      L L S    +    
Sbjct: 134 HVRRGTLALGSVNKIVLDEADEMLKMGFIEDVESLLGCAAQDY--QLALFSATMPERIVR 191

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVE 505
             K     P    I         IE++ + +SEG+K   +C  I E+       F +  E
Sbjct: 192 LTKKFMTNPAHIRIEGETTTLASIEQIALSVSEGEKIDRLCASINEEAPYLAMVFCATKE 251

Query: 506 RFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           R +++          +  + G ++   +  V+  F+    ++L AT +   G+D+   + 
Sbjct: 252 RTHTVMMELARRGYLVDALSGDLTQTQRAFVLRRFREAKLQILCATDIAARGLDIEGVTH 311

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           +   +        +H++ GR GR       I L      +      + LK 
Sbjct: 312 VYNYDLPPTVTDYIHRI-GRTGRAGAQGKAITLVAAHQHEKLRKMEAALKE 361


>gi|240013980|ref|ZP_04720893.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18]
 gi|240121547|ref|ZP_04734509.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1]
          Length = 462

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 128/347 (36%), Gaps = 45/347 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEG------CDIMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++AP   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTSFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET-------IVEATPADRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEK 495
           ++  D  + K+  K        + II + R+D    IE   +   + +    +   I   
Sbjct: 188 SATWDGAVGKLARK----LTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRD 243

Query: 496 KESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +        +++ E           +   +HG M    +   +   + G CK+L+AT
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   GID+   + +I  +        +H++ GR GR       I  
Sbjct: 304 DVAARGIDIPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|220909835|ref|YP_002485146.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 7425]
 gi|219866446|gb|ACL46785.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7425]
          Length = 457

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/354 (20%), Positives = 130/354 (36%), Gaps = 44/354 (12%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + F  PT  Q  AI  +L           I Q   G+GKT    + +   ++     
Sbjct: 18  LEALGFNEPTPIQIQAIPPLLAGRDV------IGQAQTGTGKTAAFALPILERIDTQSPA 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  + I  +  + +I V  I G        + +ER+  G A +++G
Sbjct: 72  VQALILTPTRELAVQVSQSIYNFKADPKIRVLAIYGGQ---AIERQIERLHKG-AQVLVG 127

Query: 382 THALFQDSIQYY--------KLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPI 431
           T     D +            L+L   DE    G     +  L+Q      +   +AT  
Sbjct: 128 TPGRVLDLLNRGVLNLNALAWLVLDEADEMLDMGFMPDVKQILSQAPAQRQMAFFSATMA 187

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           P    L +        IT +     P +            IE++   +  G         
Sbjct: 188 PPVYRLATQFLRSPETITVEHPKAAPSR------------IEQVAYKVPRGWSKSTTLQL 235

Query: 492 IEEKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           + E ++          R V     S  +    S+   HG +S   +E ++  F+ G  + 
Sbjct: 236 VLEMEDPESAIIFVRTRKVAAELTSQLQSHGYSVDEYHGDLSQSQRERLLQRFRQGQIRW 295

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ++AT +   G+ V D + +I  +      + +H++ GR GR  +    + L+ P
Sbjct: 296 VVATDIAARGLHVDDLTHVINYDLPDSVESYVHRI-GRTGRAGKTGIAVSLFQP 348


>gi|149187764|ref|ZP_01866061.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148838644|gb|EDL55584.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 430

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/385 (17%), Positives = 131/385 (34%), Gaps = 45/385 (11%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
                  I Q +      SPT  Q  AI  +L           +     G+GKT    + 
Sbjct: 18  SFAFSSTIHQNLAALNYESPTPIQARAIPYVLDGKD------ILAGAQTGTGKTAAFGLP 71

Query: 314 MAAAVEAGGQA----------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           +   +    +           +++ P   LAQQ ++ +    ++T + V +  G      
Sbjct: 72  LIHKIAQEPKVRESNSKVIRSLVLTPTRELAQQVFDSLVPLAKDTGLKVVVAYGGTSMGV 131

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK-- 413
           + K L     G A I++ T     D              LIL   D     G    L   
Sbjct: 132 QTKNL----VGGADILVATPGRLLDHQHNRNITLSECEYLILDEADRMLDMGFMPDLNRI 187

Query: 414 LTQKATAPHVLLMTATPIPR--TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           L +       ++ +AT   R  TL    + +    ++T   +    +K ++ P+++  + 
Sbjct: 188 LKRLPKERQNMMFSATFEQRIKTLAHRIMNEPIEVQVTPANSTADTVKQMVYPVDKKRKH 247

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
                ++ S   +   +            +   +      +    +   I+G  S   ++
Sbjct: 248 ELLAYLIGSRNWQQVLVFT--------KTKQGSDALAKELKLDGINAVSINGDKSQGARQ 299

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             +D FK+G  + LIAT V   G+D+     ++     +     +H++ GR GR      
Sbjct: 300 KALDDFKSGKVRALIATDVAARGLDIQQLEQVVNFELPYKAEDYIHRI-GRTGRAGHAGF 358

Query: 592 CILLYHPPLSKNSYTRLSVLKNTED 616
            + L    +S +    L  ++   D
Sbjct: 359 AVSL----MSHDEQYLLEAIERLLD 379


>gi|107027331|ref|YP_624842.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054]
 gi|105896705|gb|ABF79869.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054]
          Length = 465

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 169/459 (36%), Gaps = 50/459 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 22  LAQLGYVDMTPIQAASLPIALAGQD------LIAQAKTGSGKTAAFSLALLARLDARSFD 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+ P   LA Q  + +++  +    + V  + G  P   + ++LE      AHI++
Sbjct: 76  VQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH----GAHIVV 131

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT     D +    L L  ++        + L +        V  M  T   +TL+ ++ 
Sbjct: 132 GTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTT-RQTLLFSAT 190

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+K++++       K + +     D  I +    ++E ++ + +   +   +    
Sbjct: 191 YPDGIAKLSQQFLRNP--KEIKLAERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRPVST 248

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +        +          +HG +   +++ V+  F N +C +L+AT V   G
Sbjct: 249 IAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARG 308

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+     +I  +        +H++ GR GR ++    + L                K  
Sbjct: 309 LDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQDGWALSLASMDEMGRVGAIEQAQKRE 367

Query: 615 EDGFLIA-------------EEDLKQRK-------EGEILG--IKQSGMPKFLIAQP--E 650
            +   +A              E L+           G++LG     +G     I +    
Sbjct: 368 VEWHPLAELKPADDSVLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVT 427

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
              + + I R  A+  L +  +   ++G+ +++ L   +
Sbjct: 428 EFSTYVAIERGVARDALRKL-NAGKIKGKRVKVRLMDEE 465


>gi|307208568|gb|EFN85902.1| Eukaryotic initiation factor 4A-III [Harpegnathos saltator]
          Length = 403

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 135/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ +IK I++          I Q   G+GKT    IA+  +++      Q ++++
Sbjct: 52  KPSAIQQRSIKPIMKGRDV------IAQAQSGTGKTATFSIAILQSLDTQVRETQVLVLS 105

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        +      G        + L+       H++ GT     D
Sbjct: 106 PTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQ----HVVSGTPGRVFD 161

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+           L+L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 162 MIKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMT 221

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    D  +I  K      + IK   + + R +   + L  +       +A   C     
Sbjct: 222 SKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT--- 278

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+           ++  +HG M   +++++M  F++G  ++LI T V   G
Sbjct: 279 ------KRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGASRVLITTDVWARG 332

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV   S++I  +  +     +H++ GR GR       I        +            
Sbjct: 333 IDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVSINFVKTDDIRILRDIEQYYSTQ 391

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 392 IDEMPMNVADL 402


>gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300075657|gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 487

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/390 (18%), Positives = 133/390 (34%), Gaps = 51/390 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q  AI  +LQ          +     G+GKT    + +   +              
Sbjct: 39  PTPIQAQAIPVVLQGRDV------MGAAQTGTGKTAGFSLPIIQRLLQHASHSASPARHP 92

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q  + +  Y + T +   ++ G +  A +   L         I+I 
Sbjct: 93  VRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQTAILRA----GVEIVIA 148

Query: 382 THALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPI 431
           T     D +Q   + L       +DE  R      L   Q+           LL +AT  
Sbjct: 149 TPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQRQNLLFSATFS 208

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P    L  +   +    ++    A  + +   I  +    +      ++     K   + 
Sbjct: 209 PEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSFIIRQRELKQVIVF 268

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   SN +    R            + IHG  +  ++ + +++FK G  ++L+AT 
Sbjct: 269 --------SNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIEVLVATD 320

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +   +I  +  +     +H++ GR GR       I L+     +       
Sbjct: 321 VAARGLDIAELPCVINYDLPYNAEDYVHRI-GRTGRAGASGDAISLFCDKDDRLLTDIEK 379

Query: 610 VLKNTED-----GFLI-AEE---DLKQRKE 630
           ++K   +     GF   A     D  +R E
Sbjct: 380 LIKKKFERAELTGFAPRARHERSDRAERGE 409


>gi|253996647|ref|YP_003048711.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
           mobilis JLW8]
 gi|253983326|gb|ACT48184.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
          Length = 576

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 125/343 (36%), Gaps = 37/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +PT  Q  AI  +++          +     G+GKT   ++     +         G + 
Sbjct: 23  TPTPIQAQAIPVVMEGHD------LMASAQTGTGKTAGFMLPALNLLATPHESRSRGPRI 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E  +KY +  +     I G MP   + K L +       I++ T  
Sbjct: 77  LVLTPTRELAAQVNEAARKYGKFLRARTVSIVGGMPYPLQNKLLSQP----LDILVATPG 132

Query: 385 LFQDSIQYYK-----LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D ++  +     L ++I+DE  R      L   +       +    +   +TL+ ++
Sbjct: 133 RLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVE------RICEQLSAERQTLLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D DI++I ++   + P    +         IE+    + +      +   +    E N
Sbjct: 187 TLDGDIARIAQQ-ILKNPKTVQVAAQKEKHANIEQRLHFVDDMTHKNKLLEHLLIAPEVN 245

Query: 500 F-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +   +             A +HG M+   +   +   ++G  K+L+AT V  
Sbjct: 246 QTIIFTSTKRHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGDVKVLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            GIDV   + +I  +   F    +H++ GR GR       I  
Sbjct: 306 RGIDVHGITHVINYDLPKFAEDYVHRI-GRTGRANNTGIAISF 347


>gi|115361005|ref|YP_778142.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115286333|gb|ABI91808.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 511

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 135/376 (35%), Gaps = 43/376 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGG-------Q 323
           +PT  Q  AI  +L           +     G+GKT    + +    V+ G        +
Sbjct: 57  TPTPVQVKAIPAVLGGKDV------MAGAQTGTGKTAGFALPLLQRLVQQGPAVSSNRAR 110

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +    Y +   +      G +    +   L +       +++ T 
Sbjct: 111 VLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMKLRK----GVDVLVATP 166

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++Q+ ++  +++DE  R        L          +  A P+ R  +L 
Sbjct: 167 GRLLDLNRQNAVQFDQVETLVLDEADRM-------LDLGFARELNAVFAALPVQRQTLLF 219

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +       R P+   + P N     I++  V + +  K       + E    
Sbjct: 220 SATFTDDIRTMAASILRSPVNISVSPPNVTGSKIKQWVVTVDKRNKPDLFMHLVAENNWD 279

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +       R+ VE   ++ +    ++  IHG      +   ++ FK G  ++L+AT V  
Sbjct: 280 HALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAA 339

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ D  ++I  +        +H++ GR GR       + L     +       +++ 
Sbjct: 340 RGLDIDDLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALIG 398

Query: 613 NT-----EDGFLIAEE 623
            T     E GF  AE 
Sbjct: 399 QTLRREEEPGFE-AEH 413


>gi|312867114|ref|ZP_07727324.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
 gi|311097243|gb|EFQ55477.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
          Length = 536

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 134/362 (37%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     ++      QA+++AP 
Sbjct: 25  SPIQEQTIPLGLEGKDV------IGQAQTGTGKTAAFGLPTLEKIDVDNTVIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    + 
Sbjct: 135 KRKALKLDHIETLILDEADEMLNMGFLEDIEA-------IISRVPETRQTLLFSATMPEA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRS 502
            K       ++P    I       +++++  + + EG+K   +   ++ ++      F  
Sbjct: 188 IKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVEQPELAIVFGR 247

Query: 503 VVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKTGQSITFVSPNEMGYLQIIENLTKKRMKGMK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|298241052|ref|ZP_06964859.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297554106|gb|EFH87970.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 562

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/335 (22%), Positives = 127/335 (37%), Gaps = 22/335 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q  AI  +L           I Q   GSGKTL   I +   +       QA+++ P 
Sbjct: 26  TPIQAEAIPALLAGKDV------IGQSATGSGKTLAYAIPLIERLAKNKRVAQALVLVPT 79

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q    +  +    ++   ++ G      +  AL       A IIIGT    +D +
Sbjct: 80  RELAVQVNSVLSTFAAPRRLTTALLVGGRRYEKQISALRY----GAQIIIGTPGRIKDHL 135

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           +   L+L  +         Q L          +L  T+    +  + ++     I+K+ E
Sbjct: 136 EQGNLVLRDIRICVLDEADQMLDSGFGPEIEQIL-ETSPEDRQMALFSATMPTWIAKLQE 194

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------NFRSVV 504
           K   + P+K  I P   +   IE++   +  GKK   +C  +   +          +  V
Sbjct: 195 KYL-KDPVKVTITPEAGVQSTIEQIVYQVPRGKKVEALCTLLASTQGDISLIFGRTKMGV 253

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           ER      +   ++   HG  S   +E V+ +F+ G  ++L+AT V   G+D+   + +I
Sbjct: 254 ERLGEQLSNLGFAVGTFHGDKSQRAREDVLMAFRRGQVQMLLATDVAARGLDIRGITQVI 313

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
                       H++ GR GR       + L  P 
Sbjct: 314 NYELPDSDELFTHRI-GRTGRMGRYGKAVTLLVPS 347


>gi|167748398|ref|ZP_02420525.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
 gi|167652390|gb|EDR96519.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
          Length = 466

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 127/339 (37%), Gaps = 35/339 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  Q +AI  +L+          + Q   G+GKT    I +   ++      QA+I+ P 
Sbjct: 37  SPIQGAAIPVVLEGRD------IVGQAQTGTGKTAAFGIPLLEKMDTKVKKPQAMILCPT 90

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + I+K  +      V  I G     ++ ++L+      A+II+GT     D 
Sbjct: 91  RELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQIRSLKT----GANIIVGTPGRIMDH 146

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++ + L        +L   DE    G ++ +   L +       LL +AT     L +T 
Sbjct: 147 MRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQTLLFSATMPKAILDITK 206

Query: 440 LGDID--ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
               D  + K+  K      I+     +    +V    +++     K   +         
Sbjct: 207 KYQKDSKLIKVVRKELTVPNIEQYYYEVRPKQKVEVLCRLLDMHSPKLSIVF-------- 258

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N + +V+      +        IHG +    ++ VM SF+ G   +L+AT V   GIDV
Sbjct: 259 CNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILVATDVAARGIDV 318

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            D   +   +        +H++ GR GR     +     
Sbjct: 319 DDVDAVFNYDLPQDDEFYVHRI-GRTGRAGRTGNAFTFV 356


>gi|149177361|ref|ZP_01855966.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797]
 gi|148843886|gb|EDL58244.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797]
          Length = 606

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 133/360 (36%), Gaps = 41/360 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT  Q   I  +L+          + Q   G+GKT    + + + ++      Q +++A
Sbjct: 31  TPTPIQAQTIPHLLEGRD------LVGQAQTGTGKTAAFALPLLSKIDLELRAPQVLVLA 84

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  K+Y      + V  I G      + + L+R      H+++GT     
Sbjct: 85  PTRELAIQVGESFKEYGSQLKGLQVLPIYGGADFKGQLQPLKR----GVHVVVGTPGRVM 140

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++           L+L   DE  R G    ++   + T  +          +T + ++
Sbjct: 141 DHMRRGTLKLDNLRCLVLDEADEMLRMGFIDDVEWILEQTPDN---------HQTALFSA 191

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I +I           TV       D + +  +  L++G        +I E +E++
Sbjct: 192 TMPEAIRRIAGNYLKSPQEITVKDKTRTADTIRQ--RYWLAKGHHKLDALTRILEAEETD 249

Query: 500 FRSVVERFNSLHEHFTSS-------IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
              +  R  S+    +          A ++G +    +E  +   K G   ++IAT V  
Sbjct: 250 GVIIFVRTKSITTELSEKLEARGFLAAPLNGDIPQKQRERTVGRLKAGHVNIVIATDVAA 309

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   S +I  +      A +H++ GR GR       I+   P   ++       +K
Sbjct: 310 RGLDVDRISHVINYDLPGDSEAYVHRI-GRTGRAGRTGEAIMFVSPREQRSLSGIERAIK 368


>gi|121635074|ref|YP_975319.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|120866780|emb|CAM10533.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|325132439|gb|EGC55132.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M6190]
 gi|325134396|gb|EGC57041.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M13399]
 gi|325138213|gb|EGC60782.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           ES14902]
 gi|325144497|gb|EGC66796.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240013]
 gi|325205865|gb|ADZ01318.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M04-240196]
          Length = 462

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 126/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEGRD------IMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET-------IVEATPTDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    +  ++   ++ E+L        K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|170736688|ref|YP_001777948.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169818876|gb|ACA93458.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 465

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 169/459 (36%), Gaps = 50/459 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 22  LAQLGYVDMTPIQAASLPVALAGQD------LIAQAKTGSGKTAAFSLALLARLDARSFD 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+ P   LA Q  + +++  +    + V  + G  P   + ++LE      AHI++
Sbjct: 76  VQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH----GAHIVV 131

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT     D +    L L  ++        + L +        V  M  T   +TL+ ++ 
Sbjct: 132 GTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTT-RQTLLFSAT 190

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+K++++       K + +     D  I +    ++E ++ + +   +   +    
Sbjct: 191 YPDGIAKLSQQFLRNP--KEIKLAERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRPVST 248

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +        +          +HG +   +++ V+  F N +C +L+AT V   G
Sbjct: 249 IAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARG 308

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+     +I  +        +H++ GR GR ++    + L                K  
Sbjct: 309 LDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQDGWALSLVSMDEMGRVGAIEQAQKRE 367

Query: 615 EDGFLIA-------------EEDLKQRK-------EGEILG--IKQSGMPKFLIAQP--E 650
            +   +A              E L+           G++LG     +G     I +    
Sbjct: 368 VEWHPLAELKPADDSVLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVT 427

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
              + + I R  A+  L +  +   ++G+ +++ L   +
Sbjct: 428 EFSTYVAIERGVARDALRKL-NAGKIKGKRVKVRLMDEE 465


>gi|304392205|ref|ZP_07374147.1| ATP-dependent RNA helicase RhlE [Ahrensia sp. R2A130]
 gi|303296434|gb|EFL90792.1| ATP-dependent RNA helicase RhlE [Ahrensia sp. R2A130]
          Length = 536

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 129/362 (35%), Gaps = 43/362 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q +AI  +L+       ++ + Q   G+GKT    + +   + + G        +
Sbjct: 56  DPTPIQTNAIPLVLEG----RDVMGLAQ--TGTGKTAAFGLPLIDRLLSDGDKVQPRSVR 109

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   L  Q  + ++ Y + T + V  + G      + + L +       +++ T 
Sbjct: 110 ALILAPTRELVNQIADNLRAYVKKTPVWVSSVVGGQNINTQIRHLAK----GTDVLVATP 165

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +            L+L   D+    G    L+  +                +TL
Sbjct: 166 GRLLDLVDRKAVKLDTAKYLVLDEADQMLDMGFIHALRRIEP---------LLGRPRQTL 216

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     + ++++      P +  +    +  + + +    ++   K   +   + E+
Sbjct: 217 LFSATMPKLVEELSKSYLT-NPERIEVARAGKAADKVRQSVHYIATKDKLNLLSKLLAER 275

Query: 496 KES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +   E+          + A IHG  S   ++  +  FK+G  ++L+AT 
Sbjct: 276 PDDLSLVFGRTKHGCEKLMKQLVAQGFAAASIHGNKSQGQRDRALREFKSGAVRILVATD 335

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S +   N        +H++ GR  R       +    P   K       
Sbjct: 336 VAARGIDIPAVSHVYNFNLPEVPENYVHRI-GRTARAGRDGEAVAFCAPDERKMLRDIQR 394

Query: 610 VL 611
           ++
Sbjct: 395 LM 396


>gi|255013488|ref|ZP_05285614.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_7]
          Length = 421

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 126/347 (36%), Gaps = 37/347 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           +PT  Q  AI  + Q          +     G+GKT    I +   +        + G +
Sbjct: 23  TPTPIQSEAIPIVSQGYD------LLGCAQTGTGKTAAFSIPIIQRLYLQKKKGYKRGIK 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  E    Y +   +   +I G + Q  + +ALER       I+I T 
Sbjct: 77  ALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEALER----GIDILIATP 132

Query: 384 ALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D I         L   ++DE  R      +   +       +L       ++L  +
Sbjct: 133 GRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIK------RILPLLPKKRQSLFFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-- 496
           +    +I ++       +P K  + P +   + I++    + + +K   +   +E  +  
Sbjct: 187 ATMPPEIERLAGT-ILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINLLKSLLENPELE 245

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  +   ++   +          IHG  S   ++  + +FK+ T ++LIAT +  
Sbjct: 246 SVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRVLIATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            GIDV   + +I     +     +H++ GR GR              
Sbjct: 306 RGIDVDHLTHVINYELPNVPETYVHRI-GRTGRAGREGVAFSFCDAE 351


>gi|168185061|ref|ZP_02619725.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum Bf]
 gi|226949024|ref|YP_002804115.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A2 str.
           Kyoto]
 gi|237795191|ref|YP_002862743.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum Ba4 str.
           657]
 gi|182671882|gb|EDT83843.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum Bf]
 gi|226843804|gb|ACO86470.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A2 str.
           Kyoto]
 gi|229262477|gb|ACQ53510.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum Ba4 str.
           657]
          Length = 481

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 135/364 (37%), Gaps = 35/364 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  P++ Q+  I  IL+D         I++ + GSGKT    I +   +E     
Sbjct: 19  LGRLGYKNPSEVQKQVIPLILKDKD------IIVKSETGSGKTAAFSIPICEKIELEEKD 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++ P   LA Q  E I       ++    I G  P + +++ L++    + H+++G
Sbjct: 73  PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELKQ----RVHLVVG 128

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L        +L   DE    G   Q   + ++     V ++ +  IP
Sbjct: 129 TPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVTMLFSATIP 188

Query: 433 R---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L    + +     I  +      I      +   D+     K++  E      I 
Sbjct: 189 EKIENLCKKYMNNPQNININPENITTGTINQCYYEVEDKDKFSLLQKIIYKEVVDNSIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
               EK +       E    + +   ++I + HG M   D+   M  FK G  + L+ T 
Sbjct: 249 CNTREKVD-------EVLKHMKKKGFNAIGL-HGGMEQKDRLETMKKFKQGEFQFLVCTD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GI + + S +I     +   + +H++ GR GR  +    I    P   +       
Sbjct: 301 VAARGIHIENISHVINYEMPYEKESYVHRI-GRTGRAGKEGVAITFIEPNKVRFLKDIED 359

Query: 610 VLKN 613
            ++ 
Sbjct: 360 YIEK 363


>gi|187922064|ref|YP_001893706.1| ATP-dependent RNA helicase DbpA [Burkholderia phytofirmans PsJN]
 gi|187713258|gb|ACD14482.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 467

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 160/444 (36%), Gaps = 59/444 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 24  LTQLGYVEMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARNFA 77

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    I V  + G  P   +  +LE      AHI++
Sbjct: 78  VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH----GAHIVV 133

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D ++   L L     +++DE  R                  ++       +TL
Sbjct: 134 GTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIA------TVVKQCPKERQTL 187

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I K++++       K V +     +  I +    ++E  + + +   +   
Sbjct: 188 LFSATYPEGIVKLSQQFLRNP--KEVKLAERHDNTKIRQRFYEVTEDGRLHAVGLLLNHY 245

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 246 RPVSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATD 305

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP----------- 598
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 306 VAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQEGWALSLASMNEMGRVGSLEQ 364

Query: 599 --PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLIA 647
                   +    +   + +  L   E L+           G++LG    ++G     I 
Sbjct: 365 AQKREVEWHKLSELTAASNERLLPPMETLQILGGRKEKIRPGDVLGALTGEAGFAGSQIG 424

Query: 648 QPELHDS--LLEIARKDAKHILTQ 669
           +  + +    + + R  A+  L +
Sbjct: 425 KINVTEMSTYVAVERSIAREALRK 448


>gi|78067467|ref|YP_370236.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
 gi|77968212|gb|ABB09592.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
          Length = 484

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 126/363 (34%), Gaps = 30/363 (8%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------- 318
             + ++ PT  Q+ AI  +L           +     G+GKT    + +   +       
Sbjct: 17  NELGYTSPTPIQQQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHTFYADN 70

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
              +   +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             I++ T     D +Q   + L  +D         R+           +L    P  + L
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDLSNLD-ILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNL 185

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I  + +      P    +   N   E + +    +   +K   +   I E 
Sbjct: 186 LFSATFSDEIKALADSLLD-SPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREH 244

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +    R          S   IHG  S   +   +  FKN T ++L+AT 
Sbjct: 245 NWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   GID+     ++  +  +     +H++ GR GR       + L      +       
Sbjct: 305 IAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLVCVDEKQLLRDIER 363

Query: 610 VLK 612
           ++K
Sbjct: 364 LIK 366


>gi|296105809|ref|YP_003617509.1| rhlE ATP-dependent RNA helicase [Legionella pneumophila 2300/99
           Alcoy]
 gi|295647710|gb|ADG23557.1| rhlE ATP-dependent RNA helicase [Legionella pneumophila 2300/99
           Alcoy]
          Length = 414

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 133/360 (36%), Gaps = 39/360 (10%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +   + +  + ++ PT  Q  AI  IL           +     G+GKT   ++ +    
Sbjct: 10  EPLNRAVSELGYTNPTSIQLKAIPLILNGHD------LLGSAQTGTGKTASFVLPILQKA 63

Query: 319 EAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
               Q        +I+ P   LA Q +E I +Y +   +   +I G +   ++ K L+  
Sbjct: 64  SQQTQTSRNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDS- 122

Query: 372 AHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAP 421
                 I++ T     D     ++++ ++  +++DE  R      +   +K         
Sbjct: 123 ---GLEILVATPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKR 179

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
             LL +AT  P  RTL    L       I  +    K IK  +  ++R  ++     ++ 
Sbjct: 180 QNLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLH 239

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
                   +  + +           +    L E    S+AI HG  S   +   +  FK+
Sbjct: 240 KNNWGQTLVFSRTKHGA-------NKLVKQLAESQIYSVAI-HGNKSQAQRTKALADFKS 291

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  + LIAT +   GID+   + ++  +  H     +H++ GR GR       + L    
Sbjct: 292 GKVQTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRI-GRTGRAGASGLAVSLVSTE 350


>gi|114564866|ref|YP_752380.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114336159|gb|ABI73541.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 634

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/428 (19%), Positives = 150/428 (35%), Gaps = 59/428 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT  Q ++I  ++           I Q   G+GKT    + +   ++     
Sbjct: 20  LDELGYENPTPIQAASIDPLMAGKD------IIGQAQTGTGKTGAFALPLLNKIDMKINA 73

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    Y +      V  I G      +  AL+R       +I+
Sbjct: 74  PQILVLAPTRELAVQVAEAFGSYAKFMKGFHVLPIYGGQSMQQQLNALKR----GPQVIV 129

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATP 430
           GT     D ++           L+L   DE  + G    ++     K     + L +AT 
Sbjct: 130 GTPGRVMDHMRRGTLKLDNLKALVLDEADEMLKMGFIDDIEWVLEHKPADSQLALFSATM 189

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
             +   +    L +     I       + I    + +++ +++   ++V+  E  +   I
Sbjct: 190 PEQIKRVAAKHLSNPVNISIASSQTTVESIDQRYVQVSQHNKLEALVRVLEVENTEGIII 249

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +            VE    L     +S + +HG M+   +E  ++  K G   +LIAT
Sbjct: 250 FVRTRNS-------CVELAEKLEARGYAS-SPLHGDMNQQARERAVEQLKRGKLDILIAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV     ++  +  +   A +H++ GR GR       IL       +   T  
Sbjct: 302 DVAARGLDVERIGHVVNYDIPYDSEAYVHRI-GRTGRAGRTGMAILFVTNREMRMLRTIE 360

Query: 609 SVLKNTEDGFL------IAEEDLKQRKE-------GEILGIKQSGMPKFLIA----QPEL 651
               +            +AE  L +  E       G++         K  +A    Q E+
Sbjct: 361 RATNSRISPMKVPSPESVAERRLSRLGEQIQETINGDLD------FMKNAVAELCQQLEV 414

Query: 652 HDSLLEIA 659
              LL  A
Sbjct: 415 DTDLLAAA 422


>gi|313202537|ref|YP_004041194.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312441853|gb|ADQ78209.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 408

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 130/366 (35%), Gaps = 34/366 (9%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + F   T  Q   I  ILQ      +   I     G+GKT   ++ +   ++A    
Sbjct: 16  LQAMNFKEATPVQAETIPVILQ------KRDVIACAQTGTGKTAAFILPLLHNLQAEPLA 69

Query: 323 ----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A+IMAP   LAQQ  + ++ ++  T      + G    +        + +G A +
Sbjct: 70  ADKVNAIIMAPTRELAQQIDQQMEGFSYFTSFSSVAVYGGNDASAWDTQRRGLQNG-ADV 128

Query: 379 IIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           +I T       I      +  +   I+DE  R           +            P  R
Sbjct: 129 VIATPGRLLSHINLYDIDFSHVKYFILDEADRMLDMGFFDDIMQVVNR-------LPKDR 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
             ++ S       ++  K     P++ V I ++R  E I +   +  E +K   I     
Sbjct: 182 QTIMFSATMPPKIRLLAKTILNNPVE-VKIAVSRPPESIMQTAYICYEAQKHGIIRHLFA 240

Query: 494 EKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           E++ +        +  V+           S+  +H  +    ++ VM  FKN    +L+A
Sbjct: 241 EQEATKVIIFSGSKLKVKELFKTFRQMGLSVGEMHSDLDQAQRDHVMHEFKNNRVSILVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T ++  GID+ D S++I  +  H     +H++ GR  R       I              
Sbjct: 301 TDIVSRGIDIDDISLVINYDVPHDAEDYVHRI-GRTARASAKGMSITFVSEEEQYKFKQI 359

Query: 608 LSVLKN 613
              L+ 
Sbjct: 360 EDFLEK 365


>gi|198432373|ref|XP_002121386.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Ciona intestinalis]
          Length = 727

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 86/455 (18%), Positives = 148/455 (32%), Gaps = 56/455 (12%)

Query: 209 IHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP---------INVEG 259
           I  P   K+F      RE      L    +  L  R   K     P            + 
Sbjct: 198 IDYPPFEKNF-----YREHDEIKSLTNDGVDSLRRRLGIKVSGFFPPKPVSSFGHFGFDE 252

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
           KI   I ++    PT  Q   I      MS +     I     GSGKT   +  M   + 
Sbjct: 253 KIISAIRKHNFTQPTPIQAQGIP---CGMSGR---DVIGIAKTGSGKTAAFIWPMLVHIM 306

Query: 320 A--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +I+AP   L QQ Y   K++ +   +      G      ++K L   
Sbjct: 307 DQPELKKGDGPVGLIVAPTRELCQQIYFECKRFGKVYGLRSVCCYGGGNMHEQQKGLSDG 366

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAP 421
                 I++ T     D ++           L+    D     G + +++          
Sbjct: 367 CE----IVVATPGRIIDHVKKKNTNLLRVTYLVFDEADRMFEMGFEYQVRSIANHVRPDR 422

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAG--RKPIKTVIIPINRIDEVIERLKVVL 479
             LL +AT   R   L      D  +I +   G     +  ++      D   + L   +
Sbjct: 423 QTLLFSATFRKRIERLARDILTDPVRIIQGDVGEANADVTQIVEVFKTADMKWKWLLRRI 482

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
                   +   + +      ++  E   +   +    +A+IHG M   D+ +V+ +FK 
Sbjct: 483 IPFTSEGSLLVFVTK------KANAEELATNLINEGHDVALIHGDMQQYDRNNVITNFKK 536

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
                L+AT V   G+D+     +I  +         H++ GR GR  +  +   L    
Sbjct: 537 KQVATLVATDVAARGLDIPLIRNVINYDVARDIDTHTHRI-GRTGRAGQKGTAYTLVTSK 595

Query: 600 LSKNSYTRLSVLKNT-----EDGFLIAEEDLKQRK 629
            +  S   +  L+       +D   +A ++ K RK
Sbjct: 596 DTYFSGDLVRNLEGAGQRVPDDLLQLALQNSKFRK 630


>gi|168186565|ref|ZP_02621200.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
 gi|169295454|gb|EDS77587.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
          Length = 371

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/358 (20%), Positives = 126/358 (35%), Gaps = 34/358 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  QE++I+ I +          I +   G+GKTL  L+ +   +       Q +I+ 
Sbjct: 24  SPTPIQENSIEFIRKGKDV------IAEAQTGTGKTLAFLLPIFENISLESNFVQVLIVT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  +   I +    G      + K L     G   +II T     D
Sbjct: 78  PTRELAIQITEEAMKLKKAKDINILAAYGGKDIQSQLKKL----KGNIQLIIATPGRLLD 133

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRT--LV 436
            +            L+L   D+    G +  ++      +     L  +AT       L 
Sbjct: 134 HLNRSTIKLDKLKTLVLDEADQMLYMGFKNEVEKIINYTSKKYQTLCFSATMNSEVKKLA 193

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              + D  +  +  +    K IK  ++      +     KV+  +      I  +     
Sbjct: 194 YRYMKDPKVVSVKTEEITLKNIKQFVVETTDRRKQDSLCKVLDEDNPFMAIIFCRT---- 249

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+           + + +HG ++   +E VM  FKN   + LIAT V   G+D
Sbjct: 250 ----KRRVDNLEEALHKRGYNCSKLHGDLAQSKRERVMKKFKNMDTQYLIATDVAARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +   + +   +      + +H++ GR GR  E     L   P   +   T    +K T
Sbjct: 306 ITGVTHVYSYDIPENAESYIHRI-GRTGRAGEEGKTCLFIDPKDKRLLETIEKEIKFT 362


>gi|91206663|sp|Q2UAK1|FAL1_ASPOR RecName: Full=ATP-dependent RNA helicase fal1
 gi|83771282|dbj|BAE61414.1| unnamed protein product [Aspergillus oryzae]
          Length = 398

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 46  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVVRESQALVLS 99

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + L+       H++ GT     D
Sbjct: 100 PTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQ----HVVSGTPGRVAD 155

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 156 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 206

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E I++  + +  E  K   +C   +      
Sbjct: 207 LPYDVLDMTTKFMT-DPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQ 265

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 266 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 325

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 326 GIDVQQVSLVINYDLPTNRENYIHRI-GRSGRFGRKGVAINFVTSD 370


>gi|73620773|sp|Q4R3Q1|IF4A3_MACFA RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|67971846|dbj|BAE02265.1| unnamed protein product [Macaca fascicularis]
          Length = 411

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 136/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 60  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 114 PARELAVQIQKGLLTLGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 170 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 230 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 282

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 283 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 342

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 343 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 401

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 402 EMPMNVADL 410


>gi|306825666|ref|ZP_07459005.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432027|gb|EFM35004.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 518

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 133/363 (36%), Gaps = 34/363 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +   L L  +        DE    G        +++   +   LL +AT     + + + 
Sbjct: 135 KRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPDSRQTLLFSATMPDAIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  KI  K      +    I +   ++     +++  E  +   +  +       
Sbjct: 195 FMKEPEHVKIAAKELTTDLVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+ 
Sbjct: 249 --KRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    I    P          ++ K    G 
Sbjct: 307 GVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGL 365

Query: 619 LIA 621
             A
Sbjct: 366 KPA 368


>gi|240016422|ref|ZP_04722962.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140]
          Length = 462

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 128/347 (36%), Gaps = 45/347 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEG------CDIMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++AP   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTSFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET-------IVEATPADRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEK 495
           ++  D  + K+  K        + II + R+D    IE   +   + +    +   I   
Sbjct: 188 SATWDGAVGKLARK----LTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRD 243

Query: 496 KESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +        +++ E           +   +HG M    +   +   + G CK+L+AT
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|188578674|ref|YP_001915603.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523126|gb|ACD61071.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 460

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 133/372 (35%), Gaps = 37/372 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q+ AI  +L           +     G+GKT    + +   +    Q        
Sbjct: 23  TPTAIQQQAIPLVLAGHD------LLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPRKP 76

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+ P   LA Q ++ ++ Y++  +I   +I G +   ++   L R       ++I  
Sbjct: 77  RALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRR----GVDLLIAC 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D I+   + L  ++        + L +    +   +L        +TL+ ++  +
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFE 192

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
            +I ++      R P++  + P N + E I      +   +K   +   + +        
Sbjct: 193 ENIKQLA-LEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLV 251

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   ++     E      A IHG  S   +   +  FK G   +L+AT +   GID
Sbjct: 252 FARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +     +I  +        +H++ GR GR       I L     +K     + +L     
Sbjct: 312 IDQLPKVINYDLPMVAEDYVHRI-GRTGRNGSTGEAISLVAQDEAKLLRQIVRMLG---- 366

Query: 617 GFLIAEEDLKQR 628
                  D++ R
Sbjct: 367 ------RDVEIR 372


>gi|326403205|ref|YP_004283286.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301]
 gi|325050066|dbj|BAJ80404.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301]
          Length = 510

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 122/344 (35%), Gaps = 37/344 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  QE AI  +L           +     G+GKT    + M   +          +++I
Sbjct: 49  PTPIQEQAIPTVLMGRDV------LGCAQTGTGKTASFTLPMLDILSGSRARARMPRSLI 102

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   +Y ++ ++   ++ G      +R  L R       ++I T    
Sbjct: 103 LEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTR----GVDVLIATPGRL 158

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIPRT 434
            D  +   L+L  V     DE  R      +   ++      T    L  +AT  P  R 
Sbjct: 159 IDIFERGGLLLSDVRVLVIDEADRMLDMGFIPDIERIVSLLPTMRQTLFFSATMAPEIRR 218

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L    L +     ++        I   +  +   D+     +++ +E  +   +      
Sbjct: 219 LADAFLSNPKQITVSRPATVATTITEGLSLVATHDKREALRRLIRTEDVQNALVF----- 273

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +  V+           S  ++HG M    + + ++ FK G  +LL+ + V   G
Sbjct: 274 ---CNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKAGEIRLLVCSDVAARG 330

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ID+   S +   +  H     +H++ GR GR       + L  P
Sbjct: 331 IDIGGLSHVFNFDVPHHAEDYVHRI-GRTGRAGMQGRALTLATP 373


>gi|255009347|ref|ZP_05281473.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313147103|ref|ZP_07809296.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313135870|gb|EFR53230.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 418

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 130/361 (36%), Gaps = 34/361 (9%)

Query: 271 FSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------Q 323
           F   T  QE AI  IL+          I     G+GKT   L+ +   +  GG       
Sbjct: 21  FEECTPIQEQAIPVILEGRD------LIAVAQTGTGKTAAFLLPILNRLSEGGHPEDAIN 74

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            VIM+P   LAQQ  + ++ ++    +    + G        +  + +  G A ++I T 
Sbjct: 75  CVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLMLG-ADVVIATP 133

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
                      +   ++   I+DE  R        L        + ++   P  R  ++ 
Sbjct: 134 GRLIAHLSLGYVDLSRVSYFILDEADRM-------LDMGFYEDIMQIVKYLPKERQTIMF 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S       +         P++ V + +++  E I +   V  E +K   +     E+   
Sbjct: 187 SATMPSKIQQLANTILNNPVE-VKLAVSKPAEKIVQAAYVCYENQKLGIVRSLFAEEVPE 245

Query: 499 NF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  V+      +    ++  +H  +    +E +M  FK+G   +L+AT ++ 
Sbjct: 246 RVIIFASSKLKVKEVAKALKMMKLNVGEMHSDLEQAQREFIMHEFKSGRINILVATDIVS 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+ D  ++I  +  H     +H++ GR  R       +   +     N     + L+
Sbjct: 306 RGIDIDDIRLVINFDVPHDSEDYVHRI-GRTARANNDGVALTFVNEKEQTNFKNIENFLE 364

Query: 613 N 613
            
Sbjct: 365 K 365


>gi|239626754|ref|ZP_04669785.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239516900|gb|EEQ56766.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47FAA]
          Length = 572

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 123/343 (35%), Gaps = 26/343 (7%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           +  + F   +  Q  AI   ++          I Q   G+GKT    I +   V+     
Sbjct: 19  ITEMGFEEASPIQAQAIPVAMEGRD------MIGQAQTGTGKTAAFGIPLLQKVDPKVKK 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+ P   LA Q  E +++  +      V  I G      + ++L+        I++
Sbjct: 73  LQAIILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVKQIRSLKD----GTQIVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT     D ++   + +  V         + L +        +L        +TL+ ++ 
Sbjct: 129 GTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQL-PEERQTLMFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK----- 495
               I+ I  K     P+   +I        + +    +    K   +C  ++       
Sbjct: 188 MPQAIADIARKFQD-DPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMCRLLDMYAPKLS 246

Query: 496 --KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               +  R V E   +L      +  + HG +  + ++ VM SF+NG   +L+AT V   
Sbjct: 247 IVFCNTKRQVDELVQALQGRGYFAEGL-HGDLKQVQRDRVMGSFRNGRTDILVATDVAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           GIDV D   +   +        +H++ GR GR         L 
Sbjct: 306 GIDVGDVEAVFNYDVPQDDEYYVHRI-GRTGRAGREGKAFSLV 347


>gi|218709165|ref|YP_002416786.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218322184|emb|CAV18298.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 418

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 137/363 (37%), Gaps = 27/363 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT+ Q++ I  I+           +     GSGKTL   + +  +++      QA+I+ 
Sbjct: 28  KPTEIQQAVIPTIIAGKDV------LALAQTGSGKTLAFGLPLLNSIKHDVNELQAIIIV 81

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + ++       I    +TG +    +++ L      +  ++I T      
Sbjct: 82  PTRELASQVAKALEPIATTLDIKTVTLTGGVDIEIQQQQLLE----KPQLVIATPGRLHA 137

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            IQ  KL L    +        RL           ++       +TL+ ++    ++   
Sbjct: 138 VIQENKLELTQC-KSIILDEADRLLDMGFWPDVQTIISALPKKHQTLLFSATLPKELISQ 196

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------RS 502
           TE      P+K      N +   IE    ++++G KA  +   + +   S        + 
Sbjct: 197 TE-ALLVNPVKVTTHQENSVVAAIEETLYLVNKGSKAQALIALLNQHAWSQVLVFIGAKD 255

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             +           S+  +HG  +  ++E  ++SFKNG  ++LIAT V+  GI +    +
Sbjct: 256 NADALTKRLSKAKISVNALHGNKNQEEREQALESFKNGKTRVLIATDVMARGIHIDQLPV 315

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK-----NSYTRLSVLKNTEDG 617
           +I  +        +H++ GR  R     S I L     +       + T   ++    +G
Sbjct: 316 VINFDLPSHSATYVHRV-GRTARAGSTGSAISLVSHSETDYLNAIRTLTNKPLMLQALEG 374

Query: 618 FLI 620
           F +
Sbjct: 375 FPV 377


>gi|207742395|ref|YP_002258787.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|206593785|emb|CAQ60712.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 545

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 127/366 (34%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q  AI  IL+          +     G+GKT    + +   + A           
Sbjct: 23  EPTPIQRQAIPAILKG------GDLLAGAQTGTGKTAGFTLPLLHRLSAAQPNKVHTPHG 76

Query: 323 -----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                +A+++ P   LA Q  E ++ Y +   +   ++ G +    +  AL+R       
Sbjct: 77  MRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKR----GVD 132

Query: 378 IIIGTHALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I++ T     D +         + L+++DE  R      +   +K      +L    P  
Sbjct: 133 IVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRK------ILNILPPKR 186

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           + L+ ++    DI  + ++    +P    +   N   E +E+    +   +K   +   +
Sbjct: 187 QNLLFSATFSDDIRALADRLLD-QPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLV 245

Query: 493 EEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +            +    R          S   IHG  S   +   +  FK GT ++L+
Sbjct: 246 RDNDWHQVLVFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFKAGTLRVLV 305

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT +   GID+     ++  +  +     +H++ GR GR       I L           
Sbjct: 306 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGAQGEAISLVCVDEHGLLRD 364

Query: 607 RLSVLK 612
              ++K
Sbjct: 365 IERLIK 370


>gi|206564651|ref|YP_002235414.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia
           J2315]
 gi|198040691|emb|CAR56677.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia
           J2315]
          Length = 484

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 134/376 (35%), Gaps = 43/376 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L           +     G+GKT    + +   +   G        +
Sbjct: 23  TPTPVQAKAIPAVLGGKDV------MAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +   +Y +   +      G +    +   L +       +++ T 
Sbjct: 77  VLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMKLRK----GVDVLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++Q+ ++  +++DE  R        L          +  A P  R  +L 
Sbjct: 133 GRLLDLNRQNAVQFDQVQTLVLDEADRM-------LDLGFARELDAVFAALPAKRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +       R P+   +   N     I++  V + +  K       + + K  
Sbjct: 186 SATFSDEIRTMAAGILRNPVDISVSAPNATASKIKQWVVTVDKRNKPGLFMHLVAQNKWE 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +       R+ V+    + E    ++  IHG      +   ++ FK G  ++L+AT V  
Sbjct: 246 HALVFVKTRNGVDYLAVMLEKAGYAVDTIHGDKPQPARLRALERFKAGEVQMLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ D  ++I  +        +H++ GR GR       + L     +       ++++
Sbjct: 306 RGLDIDDLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALIR 364

Query: 613 NT-----EDGFLIAEE 623
            T     E GF  AE 
Sbjct: 365 QTLRREEEPGFE-AEH 379


>gi|186475195|ref|YP_001856665.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184191654|gb|ACC69619.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 522

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/346 (17%), Positives = 120/346 (34%), Gaps = 29/346 (8%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
             + ++ PT  Q+ AI  +L           +     G+GKT    + +   +       
Sbjct: 17  NELGYTSPTPIQQQAIPAVLNG------GDLLAGAQTGTGKTAGFTLPILQRLLTMPPAP 70

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+I+ P   LA Q  E ++ Y +  ++   ++ G +    +  AL R      
Sbjct: 71  GGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALRR----GV 126

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I++ T     D +Q   + L  + E        R+           +L    P  + L+
Sbjct: 127 DIVVATPGRLLDHMQQKTIDLSHL-EILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLL 185

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I  + +      P    +   N   E + +    +   +K   +   I++  
Sbjct: 186 FSATFSDEIKALADSLLD-APALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIKQHN 244

Query: 497 ESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +    R          S   IHG  S   +   +  FKN T ++L+AT +
Sbjct: 245 WFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNNTLQVLVATDI 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
              GID+     ++  +  +     +H++ GR GR       + L 
Sbjct: 305 AARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLV 349


>gi|77166069|ref|YP_344594.1| DEAD/DEAH box helicase-like [Nitrosococcus oceani ATCC 19707]
 gi|76884383|gb|ABA59064.1| ATP-dependent RNA helicase CsdA [Nitrosococcus oceani ATCC 19707]
          Length = 500

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/361 (20%), Positives = 133/361 (36%), Gaps = 35/361 (9%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
              +   + Q I +    +PT  Q  AI  +L           + Q   G+GKT    I 
Sbjct: 12  SFAISAPVLQAIKQVGYETPTLIQARAIPHLLAGHD------LVGQAQTGTGKTAAFAIP 65

Query: 314 MAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALE 369
               +E      Q +++ P   LA Q  E  + Y +  +    + I G     ++ + L+
Sbjct: 66  TLERLELSQKEPQVLVLVPTRELAIQVAEAFQSYARYLEDFHVLPIYGGQSMGNQLRQLK 125

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLIL--------VIVDEQHRFGVQQRL--KLTQKAT 419
           R     AH+I+GT     D ++   LIL           DE  + G  + +   L Q  T
Sbjct: 126 R----GAHVIVGTPGRIMDHLRRKSLILTKLTTVILDEADEMLKMGFIEDVEWILKQVPT 181

Query: 420 APHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
              V L +AT     R +    L      KI  + A    I      ++ + ++    ++
Sbjct: 182 KRQVALFSATMPTSVRNIASRHLQAPQDIKIKGETASLPAINQRYWLVSGLHKLDALTRM 241

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           + +E   A  I  +         +   E           + A ++G +    +E V+D  
Sbjct: 242 LEAEEYDATIIFVRT--------KIATEELAKKLMARGYAAAALNGDIPQSSREKVVDQL 293

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K  T  +++AT V   G+DV     ++  +  +     +H++ GR GR     +  L   
Sbjct: 294 KKNTIDIIVATDVAARGLDVKRIGHVVNYDIPYDTGTYIHRI-GRTGRAGRTGTATLFVA 352

Query: 598 P 598
           P
Sbjct: 353 P 353


>gi|326329383|ref|ZP_08195707.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
 gi|325952709|gb|EGD44725.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
          Length = 615

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 133/363 (36%), Gaps = 42/363 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
           + + +  P+  Q + I  +LQ          +     G+GKT    + + + ++      
Sbjct: 43  KALGYETPSAIQAATIPTLLQGRDV------VGLAQTGTGKTAAFALPVLSNLDVYQNAP 96

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+++AP   LA Q  E  ++Y  N   + +  + G      +  AL R      H+++G
Sbjct: 97  QALVLAPTRELALQVCEAFERYASNLDGVRILPVYGGQGYGPQLTALRR----GVHVVVG 152

Query: 382 THALFQDSI--------QYYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D +        Q   L+L   DE    G  + +   L +      V L +AT  
Sbjct: 153 TPGRIMDHLEKGTLDLSQLRFLVLDEADEMLNMGFAEDVETILAETPEDKQVALFSATMP 212

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKT-----VIIPINRIDEVIERLKVVLSEGKKAY 486
            +   L+     D  +I+ K   +          ++    ++D +   L+V   EG   +
Sbjct: 213 AQIRRLSKKYLRDAEEISVKAKTQTNTNITQRYLMVSYPQKVDALTRILEVENFEGMIVF 272

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                      +  +S  E           +   I+G ++   +E  ++  K+G+  +L+
Sbjct: 273 -----------TRTKSETESLAEKLRARGFAATAINGDIAQAQREKTVNQLKDGSLDILV 321

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV   S ++  +      A +H++ GR GR       I    P        
Sbjct: 322 ATDVAARGLDVERISHVVNYDLPTDVEAYVHRI-GRTGRAGRTGDAISFVTPRERWLLRA 380

Query: 607 RLS 609
              
Sbjct: 381 IEK 383


>gi|308178183|ref|YP_003917589.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745646|emb|CBT76618.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 642

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 131/385 (34%), Gaps = 48/385 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           L ++ +  P+  Q + I  +L+          +     G+GKT    +   + +      
Sbjct: 35  LADLGYEKPSPIQAATIPLLLEGRDV------VGLAQTGTGKTAAFALPALSRMAELADT 88

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHG 374
                  Q +++AP   LA Q  E    Y +       + + G  P   +   L R    
Sbjct: 89  NGPAKTPQILVLAPTRELALQVAEAFTSYAKYLPNFTVLPVYGGSPYGPQLNGLRR---- 144

Query: 375 QAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVL 424
            A +++GT     D I    L        +L   DE  R G  + +   L        V 
Sbjct: 145 GAQVVVGTPGRVIDHINKGSLDLSNLQYVVLDEADEMLRMGFAEEVDKILEATPEDKQVA 204

Query: 425 LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTV---IIPINRIDEVIERLKVVL 479
           L +AT     R +    L +     +  K +    I      ++  +++D +   L+   
Sbjct: 205 LFSATMPRTIRRIASEYLRNPQEVAVKSKQSTGTNITQRYLQVMGAHKLDAMTRILESET 264

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            EG  A+              +   E      +    + A I+G +    +E  +++ ++
Sbjct: 265 FEGVIAFV-----------RTKMATEDLADKLKARGFTAAAINGDIPQQQRERTIENLRS 313

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+DV   S ++  +  H   + +H++ GR GR       IL   P 
Sbjct: 314 GKIDILVATDVAARGLDVERISHVVNFDIPHDTESYVHRI-GRTGRAGRKGDAILFMTPR 372

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEED 624
                       +       +   D
Sbjct: 373 EKYLLRAIEKATRQPVTQMQLPSLD 397


>gi|296332826|ref|ZP_06875286.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673172|ref|YP_003864844.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150106|gb|EFG90995.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411416|gb|ADM36535.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 494

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 87/436 (19%), Positives = 159/436 (36%), Gaps = 44/436 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           +  + F   T  Q   I   L +         I Q   G+GKT    I +   +      
Sbjct: 18  INRMGFEEATPIQAQTIPLGLSNKDV------IGQAQTGTGKTAAFGIPLVEKINPESPN 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++AP   LA Q  E + K  Q+ +  V  I G      + +AL++      HII+G
Sbjct: 72  IQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKK----NPHIIVG 127

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-- 429
           T     D I    + L  V        DE    G    +   L+   +    LL +AT  
Sbjct: 128 TPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMP 187

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            PI R +    + + +  K+  K      I+   + +    +     +++  +  +   +
Sbjct: 188 APIKR-IAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIV 246

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +       R V E   +L+    ++  I HG ++   +   +  FK G  ++L+AT
Sbjct: 247 FGRTK-------RRVDELAEALNLRGYAAEGI-HGDLTQAKRMVALRKFKEGAIEVLVAT 298

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+   + +   +      + +H++ GR GR  +    +    P          
Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRI-GRTGRAGKTGMAMTFITPREKSMLRAIE 357

Query: 609 SVLKNTEDGFLIAEED--LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE-----IARK 661
              K   D       D  L+ +++  +  ++ +     L         LLE         
Sbjct: 358 QTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDHDAVTVVA 417

Query: 662 DAKHILTQDPDLTSVR 677
            A  + T++PD T VR
Sbjct: 418 AAIKMATKEPDNTPVR 433


>gi|294666446|ref|ZP_06731689.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292603752|gb|EFF47160.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 458

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/465 (17%), Positives = 170/465 (36%), Gaps = 73/465 (15%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + ++  T  Q  ++  ILQ +        I Q   GSGKT    + +   ++     
Sbjct: 17  IDALGYTVLTPIQAQSLPPILQGLDV------IAQAPTGSGKTAAFGLGLLQKLDPALTR 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++       + + ++TG MP   +  +LE        +++
Sbjct: 71  AQALVLCPTRELADQVGKQLRRLATGIPNMKLVVLTGGMPLGPQLASLEA---HDPQVVV 127

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    Q+  +           L+L   D     G ++ ++        H          
Sbjct: 128 GTPGRIQELARKLALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKH---------R 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           ++L+ ++     I  +  +   ++P++  +   +   E+ ++   V    ++       +
Sbjct: 179 QSLLFSATFPDSIRTLA-RELLKEPVEITVEGADSAPEIDQQFFEVDPTYRQKAVAGLLL 237

Query: 493 EEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
               E      N R  V+      + F  S   +HG M   D++ V+  F N +C +L+A
Sbjct: 238 RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           + V   G+DV D S ++            H++ GR  R  +    + L  P  +  +   
Sbjct: 298 SDVAARGLDVEDLSAVVNYELPTDTETYRHRI-GRTARAGKHGLALSLVAPRETARAQAL 356

Query: 608 LSVLKNTEDGFLI------------------AEEDLKQ-------RKEGEILG--IKQSG 640
                 TE G  +                  A   L+         + G+ILG    ++G
Sbjct: 357 -----ETEQGQPLKWSRAPLATARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAG 411

Query: 641 MPKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           +    I +  ++   S + IAR      L        ++G+  R+
Sbjct: 412 LSGAAIGKIAIYPTRSYVAIARAQVAKALAHL-HAGKIKGRRFRV 455


>gi|258541735|ref|YP_003187168.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256632813|dbj|BAH98788.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256635870|dbj|BAI01839.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256638925|dbj|BAI04887.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256641979|dbj|BAI07934.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645034|dbj|BAI10982.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648089|dbj|BAI14030.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256651142|dbj|BAI17076.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654133|dbj|BAI20060.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 445

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 127/363 (34%), Gaps = 38/363 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           +PT  QE +I  +LQ          +     G+GKT    + +   +            +
Sbjct: 24  TPTPIQERSIPYLLQGRD------LLGLAQTGTGKTASFALPILEHLIKNPRANTPKQPR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   L  Q  +  K Y ++ +    ++ G + Q  + +A+ R       +++   
Sbjct: 78  VLVLAPTRELVAQISDSFKAYARHMKFTQAVVFGGVGQGRQVEAMRR----GVDVLVAAP 133

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVL 437
               D      I    L ++++DE  R      ++           +MT  P   +TL+ 
Sbjct: 134 GRLLDLMGQGFIDLSGLEILVLDEADRMLDMGFVRDI-------RRIMTFVPEQRQTLLF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++     I  +            V  P + +D + + +  V   G K   +   +E  K 
Sbjct: 187 SATMPRSIEDLAASLLNDPARVEVAPPSSTVDRIQQAVMFVNGAGDKRDALLNMVESPKV 246

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           S        +    +              IHG  S   +E  M  F++G+ K+L+AT + 
Sbjct: 247 SRAVVFTLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGFRSGSVKVLVATDIA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV D S +   +  +   + +H++ GR  R       +                 +
Sbjct: 307 ARGIDVDDVSHVFNYDLPNVPESYVHRI-GRTARAGRDGWAVSFCDAEQRAWLRDIERTI 365

Query: 612 KNT 614
             T
Sbjct: 366 GKT 368


>gi|161870238|ref|YP_001599408.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
 gi|161595791|gb|ABX73451.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
          Length = 462

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 126/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEGRD------IMASAQTGSGKTAAFLLPTLQKLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET-------IVEATPSDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    +  ++   ++ E+L        K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|159469610|ref|XP_001692956.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
           reinhardtii]
 gi|158277758|gb|EDP03525.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
           reinhardtii]
          Length = 571

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 78/397 (19%), Positives = 148/397 (37%), Gaps = 47/397 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----------A 320
            P+  Q +AI   L+      +   I   + GSGKT   ++ M A +             
Sbjct: 174 KPSPIQMAAIPLGLK------QRDVIGIAETGSGKTAAFVLPMLAYIMRQPPMNEENEAD 227

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  AV++AP   LAQQ  E   K    T   V  + G      +   L +       I+I
Sbjct: 228 GPYAVVLAPTRELAQQIEEETHKLAHYTGYRVTSVVGGQSIEEQGTKLRKGCE----IVI 283

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVL-------- 424
            T     D I  +         ++L   D     G + ++     A     L        
Sbjct: 284 ATPGRLLDCIDRHYAVLNQCNYVVLDEADRMIDLGFEPQVIGVLDAMPKSTLKPDEEGAV 343

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           L        T + ++     + ++ +K   R+P+  VI    R+ + + +   V+ E +K
Sbjct: 344 LEENRTYRTTYMFSATMPPAVERLAKKYL-RRPVVVVIGSAGRVTDNVTQRVFVVKENEK 402

Query: 485 AYWI---CPQIEEKKES---NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
              +      ++EK+     N +   +  +   +       I+HG  +   +E+ +  F+
Sbjct: 403 GRLLEQELNNVDEKRVIVFVNTQRQCDNVHRHMDELGYHCTILHGGKTQDQREAGIKGFR 462

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +GT  +LIAT V   GIDV D ++++  +         H++ GR GR       +     
Sbjct: 463 DGTYNVLIATDVAGRGIDVPDVALVVNYDMPTNIENYTHRI-GRTGRAGRKGIAVTFLTL 521

Query: 599 PLSKNSYTRLSVLKNTEDGF--LIAEEDLKQRKEGEI 633
             +   +    +L++++      +A  +  + K G +
Sbjct: 522 GDTGVFFDLKKLLEDSKAAVPPELARHEASKVKPGTV 558


>gi|91228785|ref|ZP_01262694.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|91187660|gb|EAS73983.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
          Length = 430

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/377 (18%), Positives = 142/377 (37%), Gaps = 39/377 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--------GQ 323
             T  Q+ AI      M++K   +       G+GKT    + M   +            +
Sbjct: 23  KLTPIQQKAIP-----MARKGHDIF-ATAQTGTGKTAAFSLPMIQQLLDSNRSASRKTAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA+Q  + IK YT+ T + V  I G    + +  ALE        I++ T 
Sbjct: 77  ALILAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQVTALEN----GVDILVATP 132

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPR 433
              ++ I+           L+    D     G     R  +    T P +++ +AT   +
Sbjct: 133 GRLEEHIEQGNVSVAHLEFLVFDEADRILDMGFIHAVRKIMLDVDTDPQIMMFSATTSSQ 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
             +L         +I  + A      +  V+ P+++  +     +++  +  K   +   
Sbjct: 193 LNLLAKDILRKPKRIEVERANTTAQTVAHVLYPVDQERKTELLSELIGRKNWKQVLVFVN 252

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +E       +  E    L      ++ + HG  +   +   ++ FK+G  ++++AT V 
Sbjct: 253 YKE-------TANEVVKELKLDGIKAV-VCHGDRAQSARRRALEEFKSGKARVMVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D   ++  +        +H++ GR GR  +    +   +           +++
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRI-GRTGRAGKQGHAVSFVNRDEELTVVQVENLI 363

Query: 612 KNTEDGFLIAEEDLKQR 628
           +       +A  + KQR
Sbjct: 364 QQRIRRIELAGYEPKQR 380


>gi|15223841|ref|NP_175549.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative [Arabidopsis thaliana]
 gi|108861889|sp|Q9C8J1|RH34_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 34
 gi|4836949|gb|AAD30651.1|AC006085_24 RNA helicase [Arabidopsis thaliana]
 gi|16604541|gb|AAL24276.1| At1g51380/F11M15_24 [Arabidopsis thaliana]
 gi|18958046|gb|AAL79596.1| At1g51380/F11M15_24 [Arabidopsis thaliana]
 gi|332194539|gb|AEE32660.1| DEAD-box ATP-dependent RNA helicase 34 [Arabidopsis thaliana]
          Length = 392

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 131/345 (37%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P++ Q+ A+  IL+          I Q   G+GKT +  I++   V       Q ++++
Sbjct: 44  KPSEIQQRALVPILKGRDV------IAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLS 97

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I+    +T I      G        K LER      H + GT     D
Sbjct: 98  PSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLER----GVHAVSGTPGRVYD 153

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLT 438
            I+   L        +L   DE    G++ ++    +A    +   L++AT     L +T
Sbjct: 154 MIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMT 213

Query: 439 SLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
                D  +I  KP     + IK   + +++ +   + L  +       +A   C     
Sbjct: 214 EKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCNT--- 270

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R  V+            ++ +HG     +++ +M+ F++   ++LIA+ V   G
Sbjct: 271 ------RQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARG 324

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           IDV   S +I  +  +     +H++ GR GR       I      
Sbjct: 325 IDVQTVSHVINYDIPNNPELYIHRI-GRAGRFGREGVAINFVKSS 368


>gi|290987818|ref|XP_002676619.1| predicted protein [Naegleria gruberi]
 gi|284090222|gb|EFC43875.1| predicted protein [Naegleria gruberi]
          Length = 493

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 140/370 (37%), Gaps = 44/370 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----------EA 320
            PT  Q+  I   +  +        +   + GSGKT   +I M   +           + 
Sbjct: 110 EPTAVQKQCIPIAMNGID------LVGLAETGSGKTASYIIPMCCQIAKLPRMNDEIAKD 163

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G   +I+ P   LA+Q      KY +  +  V+ I G +    + + +     G   I++
Sbjct: 164 GPYGLILVPTRELAEQIEREATKYARQFEFRVQAIIGGVSIEKQSRLIR----GGCEILV 219

Query: 381 GTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            T     D +        Q + ++L   D+      ++ +    +    H+         
Sbjct: 220 ATPGRLIDCLNNSIVVLNQCHFIVLDEADKMIEMNFEKDVNTILENMPTHIQ-------R 272

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQ 491
           +T++ ++    ++  I  K   +K +   +  + R  E IE+  + +  E  K   +   
Sbjct: 273 QTMLFSATMPPEVENIAMKYL-KKRVTVAVGEVGRAVERIEQEVMWIKHENAKRDKLLEL 331

Query: 492 IEEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + +         N +  V+       +       IHG  S   + S +++FK+G   +++
Sbjct: 332 LYDADPPVIVFCNLKKEVDAIAKFVSNAGFRSTSIHGNKSQEARNSALEAFKSGKFDVIV 391

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V+  GID+   ++++  +      A  H++ GR GR       +       ++  Y 
Sbjct: 392 ATDVLGRGIDISGVTLVVNYSLPKTISAYTHRI-GRTGRAGRTGRAVSFLTKDDTEIMYD 450

Query: 607 RLSVLKNTED 616
              +L++T++
Sbjct: 451 LKKMLESTKN 460


>gi|269797693|ref|YP_003311593.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
 gi|269094322|gb|ACZ24313.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
           2008]
          Length = 432

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 129/352 (36%), Gaps = 22/352 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE +I  + +          I +   G+GKTL  L+ +   V       Q +I+A
Sbjct: 24  EPTPIQEQSIPVVFKG------NDVIAKAQTGTGKTLAFLLPILQRVHTDVHQEQVLIIA 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L +Q  +  K+      + +  + G      + + L R    +  +I+GT     D
Sbjct: 78  PTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQLQQLGR----RPQVILGTPGRLLD 133

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +   L L  +         Q L +       +  L++ T   R L+L S    D  + 
Sbjct: 134 HAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIEN--LISQTDANRQLLLFSATIPDKIRN 191

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVE 505
             K    KPI       +   E I++   +++  +K   +   IE+        F +  E
Sbjct: 192 LAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEKTQRLIKMIEDDNPFLAIVFCNKRE 251

Query: 506 RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
               L    T+   +IA +HG ++   +  ++  F     ++L+AT +   GID+   + 
Sbjct: 252 GAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITH 311

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +   +        +H++ GR GR       +    P            ++ T
Sbjct: 312 VYNYDVPRDVDYYIHRI-GRTGRAGNSGIAVTFATPQDEAWLRRIERAIQAT 362


>gi|187921780|ref|YP_001890812.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phytofirmans PsJN]
 gi|187720218|gb|ACD21441.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 479

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 136/376 (36%), Gaps = 43/376 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L      N ++   Q   G+GKT    + +   +   G        +
Sbjct: 23  TPTPVQVKAIPAVL----SGNDVMAAAQ--TGTGKTAGFALPLLQRLVQHGPEVSSNRAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +    Y +   +      G +    +   L +       +++ T 
Sbjct: 77  VLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMKLRK----GVDVLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++Q+ ++  +++DE  R       +           +  A P  R  +L 
Sbjct: 133 GRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFERELNA-------VFAALPAQRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +       R P+   + P N     I++  V + +  K       + E    
Sbjct: 186 SATFTDDIRTMAAGILRGPVNISVSPPNATASRIKQWVVPVDKKNKPDLFMHLVAENNWE 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +       R+ V+   ++ +    S+  IHG      +   ++ FK G   +L+AT V  
Sbjct: 246 HALVFVKTRNGVDYLAAILDKAGYSVDTIHGDKPQPARLRALERFKTGEVSMLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ +  ++I  +        +H++ GR GR       + L     +       ++++
Sbjct: 306 RGLDIDNLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALIR 364

Query: 613 NT-----EDGFLIAEE 623
            T     E GF  AE 
Sbjct: 365 QTLRREEEPGFE-AEH 379


>gi|307721994|ref|YP_003893134.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM
           16294]
 gi|306980087|gb|ADN10122.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM
           16294]
          Length = 452

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 84/427 (19%), Positives = 163/427 (38%), Gaps = 61/427 (14%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           + ++ +   T  Q  ++  IL+          I Q   GSGKT    I +   +      
Sbjct: 16  IESLGYKEMTPIQAQSLPSILEGRD------IIAQAKTGSGKTAAFGIGLLHHLNVKKFR 69

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + +++  +    I + +++G      +  +L      QAHII+
Sbjct: 70  VQSLVLCPTRELADQVAKELRRLARFQHNIKILMLSGGESFGRQLGSLAH----QAHIIV 125

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATP 430
           GT       +    L L  +        D     G  + ++  L         LL +AT 
Sbjct: 126 GTPGRVLKHLNKESLELSNLNTLVFDEADRMLDMGFIEEIESVLAFVPKERQTLLFSATY 185

Query: 431 IPRTLVLTSLGDIDISKITE--KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               L ++     +   +    +    K ++      +++D +I+     +    K   +
Sbjct: 186 DDEILQISKRIQNNALHVKTAAQEVQNKIVQEFYETNDKVDTLIK-----ILANYKPENV 240

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                 K E+      E   SL ++   ++AI HG +   ++  V+  F N +C +L+AT
Sbjct: 241 IVFTNTKLEAK-----ELAESLVQNKIDALAI-HGDLEQYERNDVLVQFANKSCPVLVAT 294

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D S+++  +  H      H++ GR GR       + LY+   ++      
Sbjct: 295 DVAARGLDIKDLSMVVNYDLPHSMETYTHRI-GRTGRAGAEGIAVTLYNEYEAQKIEPYE 353

Query: 609 SVLKNT---------EDGFLIAEEDL----------KQRKEGEILG--IKQSGMPKFLIA 647
              K+          E GF +  + +          K R  G+ILG     +G+    I 
Sbjct: 354 EDEKHVFLDASALKKEQGFEMKPQYVTLVIEGGKKDKIR-AGDILGALTGDAGLQGSSIG 412

Query: 648 QPELHDS 654
           + +L+D 
Sbjct: 413 KIDLYDR 419


>gi|255013264|ref|ZP_05285390.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_7]
          Length = 426

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 125/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVIM 327
           T  QE  I  IL+          I     G+GKT   ++ +   +  G        AVIM
Sbjct: 25  TPVQELTIPVILEGKD------IIACAQTGTGKTAAYVLPVINELSKGCHPTDAVNAVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LAQQ  + I+ +T     +  +           +  +R     A I+I T     
Sbjct: 79  APTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGADIVIATPGRLL 138

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT--PIPRTL 435
             I+   +        +L   D     G    +     Q       ++ +AT  P  RTL
Sbjct: 139 SHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQTIMFSATMPPKIRTL 198

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L D +  KI         ++T  I  +     I +     S  ++           
Sbjct: 199 AKTILKDPEEVKIAISRPPESIMQTAYICYDPQKLKILQDLFTQSRPQRVIIF------- 251

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             S+ +  V+   S  +    ++A +H  +    +E VM  FK+G   +L+AT V+  GI
Sbjct: 252 --SSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGI 309

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           D+ D  +++  +  H     +H++ GR  RG       + +
Sbjct: 310 DINDIKLVVNFDIPHDPEDYVHRI-GRTARGTNGEGLAITF 349


>gi|84622357|ref|YP_449729.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84366297|dbj|BAE67455.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 460

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 133/372 (35%), Gaps = 37/372 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q+ AI  +L           +     G+GKT    + +   +    Q        
Sbjct: 23  TPTAIQQQAIPLVLAGHD------LLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPRKP 76

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+ P   LA Q ++ ++ Y++  +I   +I G +   ++   L R       ++I  
Sbjct: 77  RALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRR----GVDLLIAC 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D I+   + L  ++        + L +    +   +L        +TL+ ++  +
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFE 192

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
            +I ++      R P++  + P N + E I      +   +K   +   + +        
Sbjct: 193 ENIKQLA-LEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLV 251

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   ++     E      A IHG  S   +   +  FK G   +L+AT +   GID
Sbjct: 252 FARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +     +I  +        +H++ GR GR       I L     +K     + +L     
Sbjct: 312 IDQLPKVINYDLPMVAEDYVHRI-GRTGRNGSTGEAISLVAQDEAKLLRQIVRMLG---- 366

Query: 617 GFLIAEEDLKQR 628
                  D++ R
Sbjct: 367 ------RDVEIR 372


>gi|47209111|emb|CAF90069.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 415

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 137/379 (36%), Gaps = 45/379 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----------A 320
            P+  Q+ AIK I++          I Q   G+GKT    +++   ++            
Sbjct: 56  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFCVSVLQCLDIQVSGSTLVQVR 109

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             QA+I+AP   LA Q  + +        +      G        + L+       H++ 
Sbjct: 110 ETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVA 165

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATP 430
           GT     D I+   L        +L   DE    G ++++         A  V+L++AT 
Sbjct: 166 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 225

Query: 431 IPRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAY 486
               L +T+    D  +I  K      + IK   + + R +   + L  +       +A 
Sbjct: 226 PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAV 285

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C           +  V+           +++ +HG M   ++ES+M  F++G  ++LI
Sbjct: 286 IFCNT---------KRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 336

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           +T V   G+DV   S+II  +  +     +H++ GR GR       I        +    
Sbjct: 337 STDVWARGLDVPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRD 395

Query: 607 RLSVLKNTEDGFLIAEEDL 625
                    D   +   DL
Sbjct: 396 IEQYYSTQIDEMPMNVADL 414


>gi|237807374|ref|YP_002891814.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237499635|gb|ACQ92228.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 642

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 132/358 (36%), Gaps = 35/358 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            P+  Q +AI  +L+          + Q   G+GKT    + + + +   +   Q +I+A
Sbjct: 30  DPSPIQAAAIPPLLEGRD------LLGQAQTGTGKTGAFALPILSRLNLTQMDTQVLILA 83

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  + Y Q       + I G      + +AL R     A +++GT     
Sbjct: 84  PTRELAIQVAEACQSYAQFIPDFHVLPIYGGSSYDSQLRALRR----GAQVVVGTPGRVM 139

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRT--L 435
           D ++  KL        +L   DE  R G    ++    Q      + L +AT   +   +
Sbjct: 140 DMMRRGKLDLSALKTLVLDEADEMLRMGFIDDVEWVIEQCPLDRQIALFSATMPEQIRRI 199

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L      KI  K +    I+     ++ + ++    +++  E   A  +  +    
Sbjct: 200 AHRHLKTPVEIKIASKTSTAANIRQRYWLVSGLHKLDAMTRMLEVEQYDALLVFVRT--- 256

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E   S       S   +HG +    +E  ++  K G   +LIAT V   G+
Sbjct: 257 -----KTAAEELTSKLSARGHSCEALHGDIPQKLRERTVEKLKAGQIDILIATDVAARGL 311

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           DV   + ++  +  +   + +H++ GR GR       IL   P   +         + 
Sbjct: 312 DVERITHVVNYDIPYDTESYVHRI-GRTGRAGRTGDAILFVAPRERRMLRMIEQATRQ 368


>gi|167624613|ref|YP_001674907.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167354635|gb|ABZ77248.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 458

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 135/381 (35%), Gaps = 39/381 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             ++ ++ Q +      +PT+ QE AI   L           +     GSGKTL  L+  
Sbjct: 16  FALDQRLLQSLKHMGIDTPTEIQEQAIPIALAGKD------LMASSKTGSGKTLAFLLPA 69

Query: 315 AAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              +       +   + VI+ P   LA Q Y  ++    NTQ     I G      + KA
Sbjct: 70  MQRLISCKALSKRDPRVVILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKA 129

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKAT 419
           L R      H ++ T     D ++ + L        IL   D     G  ++LKL   A 
Sbjct: 130 LAR----DPHFVVATPGRLADHLKQHHLHLNGLELLILDEADRMLDLGFAEQLKLINNAA 185

Query: 420 AP---HVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  L+ +AT        +    L   +   I       K I   I   + +D    
Sbjct: 186 DHKRRQTLMFSATLDHGDVNDIANELLKFPEHVAIGASNLEHKDITQRIFLCDHLDHKEA 245

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L  +L E ++   I            R   +R  +         A + G +    +  +
Sbjct: 246 ILTRILKEEQQKQIIIFT-------ATRQDTDRLATKLAAEGFKTASLSGELKQNARNQI 298

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           MD F  G  ++L+ T V   G+D+++ S++I  +   F    +H++ GR GR       I
Sbjct: 299 MDEFSRGLQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDAI 357

Query: 594 LLYHPPLSKNSYTRLSVLKNT 614
            L  P    N     + L  T
Sbjct: 358 SLVGPKDWVNFTQVQTFLNKT 378


>gi|303319503|ref|XP_003069751.1| Eukaryotic translation initiation factor, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|142985565|sp|Q1DTB3|FAL1_COCIM RecName: Full=ATP-dependent RNA helicase FAL1
 gi|240109437|gb|EER27606.1| Eukaryotic translation initiation factor, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320040787|gb|EFW22720.1| ATP-dependent RNA helicase FAL1 [Coccidioides posadasii str.
           Silveira]
          Length = 399

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/338 (19%), Positives = 123/338 (36%), Gaps = 23/338 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAIQSRAIVQICKGRDT------IAQAQSGTGKTATFAISILQVIDTALRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + L+       H++ GT     D
Sbjct: 101 PTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLDHGQ----HVVSGTPGRVAD 156

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            I+   L    + +         L         + +     P  + +VL++    D+  +
Sbjct: 157 MIRRRHLRTRHI-KMLVLDEADDLLARGFREQIYDVYRYLPPATQVVVLSATLPYDVLSM 215

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK------ESNFR 501
           T K     P++ ++       E +++  + +  E  K   +C   +           N R
Sbjct: 216 TTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   GIDV   S
Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           ++I  +        +H++ GR GR       I      
Sbjct: 335 LVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTSE 371


>gi|126651493|ref|ZP_01723697.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
 gi|126591746|gb|EAZ85842.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
          Length = 513

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/348 (21%), Positives = 129/348 (37%), Gaps = 35/348 (10%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
           + + F   T  QE  I+  ++          + Q   G+GKT    I +   ++      
Sbjct: 18  KRMGFEEATPIQEGTIRFAIEGRDV------LGQAQTGTGKTAAFGIPLIEKIDPKNPNI 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+++AP   LA Q  E + K   + ++ +  + G      + +AL      +  II+GT
Sbjct: 72  QALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRAL----KNKPQIIVGT 127

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP 432
                D I    L L  V        DE    G    +   L         LL +AT  P
Sbjct: 128 PGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPAERQTLLFSATMPP 187

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             R +  T + D +I KI  K      I    +     ++     +++     +   I  
Sbjct: 188 AIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLNVHQPELAIIFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           + +       R V E   +L      +  I HG +S   + SV+  FK     +L+AT V
Sbjct: 248 RTK-------RRVDELAQALSIRGYLAEGI-HGDLSQAKRISVLRQFKENKIDILVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   + +   +      + +H++ GR GR  +    +    P
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKSGLAVTFVTP 346


>gi|119963381|ref|YP_948725.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
 gi|119950240|gb|ABM09151.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
          Length = 726

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 135/384 (35%), Gaps = 47/384 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + ++G++   +       P+  Q + I  +L+          +     G+GKT    +  
Sbjct: 76  LGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDV------VGLAQTGTGKTAAFAVPA 129

Query: 315 AAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHR 364
            + +             QA+++AP   LA Q  E    Y ++     V  + G      +
Sbjct: 130 LSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQ 189

Query: 365 RKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRL--KL 414
              L R     A +++GT     D I        +   L+L   DE  R G    +    
Sbjct: 190 LAGLRR----GAQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADDVEQIF 245

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI-----TEKPAGRKPIKTVIIPINRID 469
            Q      V L +AT   +   ++     + ++I     T   A  K     ++  +++D
Sbjct: 246 QQTPETRQVALFSATMPGQIRRMSKQYLNNPAEISVKSKTTTGANTKQRYLQVMGPHKLD 305

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            +   L+V   +G  A+              +   E      +      A I+G +    
Sbjct: 306 ALTRILEVEEFDGVIAFV-----------RTKMATEDLADKLKARGFQAAAINGDIPQQQ 354

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E  +D+ K G   +L+AT V   G+DV   S +I  +  H   + +H++ GR GR    
Sbjct: 355 RERTVDALKEGRIDILVATDVAARGLDVERISHVINYDIPHDTESYVHRI-GRTGRAGRS 413

Query: 590 SSCILLYHPPLSKNSYTRLSVLKN 613
              IL   P       +     + 
Sbjct: 414 GDAILFMTPREKYLLRSIEKATRQ 437


>gi|119896607|ref|YP_931820.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119669020|emb|CAL92933.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 447

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 126/359 (35%), Gaps = 40/359 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------EAGGQA 324
           +PT  QE AI   +           ++    GSGKT    +     +        +G + 
Sbjct: 23  TPTPVQEQAIPAAIAG------GDLLVSSHTGSGKTAAFTLPSLHRLVGRRPAPNSGPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LAQQ  E +K Y +    +    + G  P   + K L R       +++ T 
Sbjct: 77  LVLTPTRELAQQVEEAVKTYGRALRWLNTACLVGGAPFFAQVKQLSRP----VDVVVATP 132

Query: 384 ALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D +   KL L  V        D     G  + ++        +   LL +AT    
Sbjct: 133 GRLLDHLNRRKLKLSDVETLVLDEADRMLDMGFAEDIEAIVGAIPASRQTLLFSATLDGV 192

Query: 434 T--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICP 490
              L      +    +I    A R  I+  ++  + +      L+ +L ++G +   +  
Sbjct: 193 VGALANKLTRNPQRIEIASTEAKRGNIEQRLMFADDMGHKSRLLEALLGTDGLQQAVVFT 252

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             ++  +    S+ E+          S A +HG M    +   +   + G   +L+AT V
Sbjct: 253 ATKKSADELSLSLQEK--------GFSAAALHGDMHQTVRNRTLQRLRQGRIGVLVATDV 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
              GIDV   S +I  +        +H++ GR GR       I L  P  +        
Sbjct: 305 AARGIDVAGISHVINFDPPRQVEDYVHRI-GRTGRAGRDGIAITLSGPRETGLIRAIER 362


>gi|282878371|ref|ZP_06287163.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
 gi|281299557|gb|EFA91934.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
          Length = 558

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 135/369 (36%), Gaps = 36/369 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL+          +     G+GKT   L+ + + +++G         +IM
Sbjct: 25  TPVQEKCIPEILKGRDV------LGVAQTGTGKTAAYLLPIMSKIDSGNYPEDAINCLIM 78

Query: 328 APIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +P   LAQQ  + ++ +      +    + G        + L+ +  G A ++I T   F
Sbjct: 79  SPTRELAQQIDQAMQGFGYYLQGVSSVAVYGGNDGNRYDQELKSLRMG-ADVVIATPGRF 137

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRT-- 434
              +    +        +L   D     G  + +    K        ++ +AT   +   
Sbjct: 138 ISHMSLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKGLPKTCQTIMFSATMPDKINE 197

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L  T L +    K+       K  +T  +      + +  +K +  +G     I      
Sbjct: 198 LARTLLKNPVEVKLAVSKPAEKIKQTAYVCHET--QKLGIIKKIFKQGDLKRVIIF---- 251

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V++ +   +    +   +H  +    ++ VM  FK+G   +L+AT ++  G
Sbjct: 252 ---CGAKQKVKQVSQALQRMKINCGEMHSDLDQAQRDEVMFQFKSGQIDVLVATDILSRG 308

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           ID+ D +++I  +  H     +H++ GR  R +   + I L               L+  
Sbjct: 309 IDIDDIAMVINYDVPHDAEDYVHRI-GRTARADRDGAAITLVSKDDIYYFQQIEKFLEKE 367

Query: 615 EDGFLIAEE 623
            +   + EE
Sbjct: 368 VEKVELPEE 376


>gi|170690407|ref|ZP_02881574.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170144842|gb|EDT13003.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 481

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/377 (16%), Positives = 132/377 (35%), Gaps = 45/377 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L           +     G+GKT    + +   +   G        +
Sbjct: 23  TPTPVQAKAIPAVLSGKDV------MAAAQTGTGKTAGFALPLLQRLGQQGPAVSSNRAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +    Y +   +      G +    +   L +       +++ T 
Sbjct: 77  VLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSVNPQMMKLRK----GVDVLVATP 132

Query: 384 ALFQD-----SIQYYK---LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPR 433
               D     ++Q+ +   L+L   D     G  + L             LL +AT    
Sbjct: 133 GRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAERQTLLFSATFTDD 192

Query: 434 TLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L +        I+  P       I+  ++P+++ ++    + +V     +   +   
Sbjct: 193 IRALAAGILRGPVDISVSPPNATASKIRQWVVPVDKRNKPDLFMHLVAQNNWEHALVFV- 251

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    R+ V+   ++ +    ++  IHG      +   ++ FK G   +L+AT V 
Sbjct: 252 -------KTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARMRALERFKTGEVNMLVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D  ++I  +        +H++ GR GR       + L     +       +++
Sbjct: 305 ARGLDIDDLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALI 363

Query: 612 KNT-----EDGFLIAEE 623
           + T     E GF  AE 
Sbjct: 364 RQTLRREEEPGFE-AEH 379


>gi|310816695|ref|YP_003964659.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium
           vulgare Y25]
 gi|308755430|gb|ADO43359.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium
           vulgare Y25]
          Length = 517

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/387 (18%), Positives = 147/387 (37%), Gaps = 46/387 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N++ K+ Q +      +PT  Q  AI + L           +     G+GKT    + M
Sbjct: 7   LNLDPKVLQAVAEAGYTTPTPIQAGAIPEALAGRDV------LGIAQTGTGKTASFTLPM 60

Query: 315 AAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
              +  G       +++++ P   LA Q  E    Y + T++   ++ G +    +   +
Sbjct: 61  IQLLSRGRARARMPRSLVLCPTRELAAQVAENFDMYAKYTKLTKALLIGGVSFKDQDTLI 120

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
           +R       ++I T     D  +  KL+L     ++VDE  R      +   ++      
Sbjct: 121 DR----GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIER------ 170

Query: 424 LLMTATPI-PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV----- 477
            +   TP   +TL  ++    +I +IT       P +  +      ++ I +  V     
Sbjct: 171 -IFQMTPFTRQTLFFSATMAPEIERITNTFLS-APARIEVARAATTNQNITQAVVQFKGS 228

Query: 478 --VLSEGKKAYWICPQIEEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
                  +K   +   IE +           N +  V+      + +  +   IHG +  
Sbjct: 229 SKEREPSEKRAVLRALIEAESATLTNAIIFCNRKIDVDIVAKSLKKYGYNAEPIHGDLDQ 288

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +   +D F++G+ K L+A+ V   G+D+   S +   +        +H++ GR GR  
Sbjct: 289 SQRMRTLDGFRDGSVKFLVASDVAARGLDIPSVSHVFNFDVPSHAEDYVHRI-GRTGRAG 347

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNT 614
              S  ++  P   KN     +++++T
Sbjct: 348 RTGSTFMICVPRDEKNLAAIEALVQST 374


>gi|302382668|ref|YP_003818491.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193296|gb|ADL00868.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 728

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 145/388 (37%), Gaps = 46/388 (11%)

Query: 254 PINVEGKIAQKILRNIPF-SPTKSQESAIKDILQD---MSQKNRMLRILQGDVGSGKTLV 309
           P         + L    +  PT  Q + ++  L +   +  ++    ++    GSGKT+ 
Sbjct: 2   PFPASHPALDRALSERGYAEPTPVQAAVLEAALSEDGSVDAESGRDLLVSAQTGSGKTVA 61

Query: 310 ALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
             +A+A  +    +         A+++AP   LAQQ    +      T   +    G M 
Sbjct: 62  FGLALAPTLLGEAERFTDFGAPLALVIAPTRELAQQVASELTWLYAQTGARIVSCVGGMD 121

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL 412
               R+ALER     AHI++GT    +D ++   L        +L   DE    G Q+ L
Sbjct: 122 PKVERRALER----GAHIVVGTPGRLRDHLERGALDLSEARAVVLDEADEMLDMGFQEDL 177

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
                       L  A P  RTL+ ++    DI ++  K   R  I+   +  N+    I
Sbjct: 178 TFI---------LDAAPPTRRTLMFSATLARDIVQLA-KTYQRDAIRIDTVAGNKSHADI 227

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           E   +  +  +    +   +   +      F +  ER   L          +  + G ++
Sbjct: 228 EYKAIRCAPNEIELAVVNVLRYFEAPGALVFANTRERVKHLTASLRERGFSVVGLSGELT 287

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              +   + + ++G  ++ +AT V   G+D+ D  ++I           LH+  GR GR 
Sbjct: 288 QSARSEALQALRDGHARVCVATDVAARGLDLPDLGLVIHAEIPVNKAGLLHR-SGRTGRA 346

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNT 614
            +    +LL     S     ++ ++  +
Sbjct: 347 GKKGVSVLLV----SYTRRRKVELMLQS 370


>gi|224073500|ref|XP_002304104.1| predicted protein [Populus trichocarpa]
 gi|118484805|gb|ABK94270.1| unknown [Populus trichocarpa]
 gi|222841536|gb|EEE79083.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 129/347 (37%), Gaps = 33/347 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L +T
Sbjct: 172 MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ +  +E L          Y      +   
Sbjct: 232 RKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           V   S++I  +        LH++ GR GR       I        + 
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRDDDRM 390


>gi|15230945|ref|NP_188610.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative / DEAD box RNA helicase, putative [Arabidopsis
           thaliana]
 gi|109893655|sp|Q94A52|RH2_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 2
 gi|332642762|gb|AEE76283.1| DEAD-box ATP-dependent RNA helicase 2 [Arabidopsis thaliana]
          Length = 408

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 137/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ A+  ILQ          I Q   G+GKT +  +++   V+      QA+I++
Sbjct: 57  KPSAIQQRAVMPILQGRDV------IAQAQSGTGKTSMIALSVCQVVDTSSREVQALILS 110

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I+    +  I      G        + LE       H++ GT     D
Sbjct: 111 PTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEH----GVHVVSGTPGRVCD 166

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        IL   DE    G + ++            V L++AT     L +T
Sbjct: 167 MIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMT 226

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    +  KI  K      + IK   + + + +   + L  +       +A   C     
Sbjct: 227 SKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT--- 283

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+  +        +++ +HG M   +++++M+ F++G  ++LI T V   G
Sbjct: 284 ------KRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARG 337

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV   S++I  +  +     +H++ GR GR       I        K            
Sbjct: 338 IDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ 396

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 397 IDEMPMNVADL 407


>gi|326693280|ref|ZP_08230285.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
           [Leuconostoc argentinum KCTC 3773]
          Length = 518

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/341 (19%), Positives = 122/341 (35%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE  I   L           I Q   G+GKT    + +   ++      QA+I++P 
Sbjct: 25  TPIQEKTIPLTLAGKDV------IGQAQTGTGKTAAFGLPILENIDLDNKNIQALIVSPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  + +KK   +  + V+++ G      + + L+        I++GT     D I
Sbjct: 79  RELAIQTADELKKLGHDKHVDVQVVFGGADIRRQIQNLKS----HPQILVGTPGRLLDHI 134

Query: 391 QYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
                       L+L   DE    G        +         LL +AT  P  + + + 
Sbjct: 135 NRKTVKIDQVKTLVLDEADEMLNMGFLDDIEAIIKNTPADRQTLLFSATMPPAIKRIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  +I  K      +    +   R +E  + +  +L          P +      
Sbjct: 195 FMTNPEHIQIEAKELTTDLVDQYFVRA-RDNEKFDTMTRILD------VQAPTLAIVFGR 247

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             R V E    L      +  + HG ++   +  V+  FK+    +L+AT V   G+DV 
Sbjct: 248 TKRRVEELARGLEARGYHAAGL-HGDLTQQMRSRVLSQFKSHEINILVATDVAARGLDVK 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           D S +   +      + +H++ GR GR       +    P 
Sbjct: 307 DVSHVYNFDIPQDPESYVHRI-GRTGRAGAEGVSVTFVAPN 346


>gi|115456051|ref|NP_001051626.1| Os03g0805200 [Oryza sativa Japonica Group]
 gi|75326432|sp|Q75HJ0|RH37_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 37; AltName:
           Full=OsPL10a
 gi|41469394|gb|AAS07217.1| putative helicase [Oryza sativa Japonica Group]
 gi|108711635|gb|ABF99430.1| ATP-dependent RNA helicase An3, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113550097|dbj|BAF13540.1| Os03g0805200 [Oryza sativa Japonica Group]
 gi|222626000|gb|EEE60132.1| hypothetical protein OsJ_13017 [Oryza sativa Japonica Group]
          Length = 637

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 61/375 (16%), Positives = 132/375 (35%), Gaps = 45/375 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  AI   +           +     GSGKT      + + + +           
Sbjct: 196 KPTPVQRYAIPISIAGRD------LMACAQTGSGKTAAFCFPIISGIMSSRPPQRPRGSR 249

Query: 324 -----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A+I++P   L+ Q +E  +K+   T + V +  G  P   + + LER       I
Sbjct: 250 TAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPIHQQLRELER----GVEI 305

Query: 379 IIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T     D ++  ++ L +V     DE  R          Q       + M    + +
Sbjct: 306 LVATPGRLMDLLERARVSLQMVKYLALDEADRMLDMGFEP--QIRKIVEQMDMPPRGVRQ 363

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    +I ++         I   +  +    ++I +    + E  K  ++   + 
Sbjct: 364 TMLFSATFPKEIQRMASDFLA-DYIFLAVGRVGSSTDLIAQRVEFVLEADKRSYLMDLLH 422

Query: 494 EKKES-------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +K +               +   +   +           IHG  +  ++E  + SFK+G
Sbjct: 423 AQKANGTHGKQALTLVFVETKRGADALENWLYTNGFPATSIHGDRTQQEREYALRSFKSG 482

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+D+   + +I  +  +     +H++ GR GR  +       ++   
Sbjct: 483 ATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRI-GRTGRAGKSGLATAFFNEGN 541

Query: 601 SKNSYTRLSVLKNTE 615
              +     +++   
Sbjct: 542 LSLARPLCELMQEAN 556


>gi|254519619|ref|ZP_05131675.1| DEAD/DEAH box helicase domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226913368|gb|EEH98569.1| DEAD/DEAH box helicase domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 370

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 132/352 (37%), Gaps = 22/352 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMA 328
           +PTK Q + I +I+      N+   I +   GSGKTL  L+ +   +++  +    +I++
Sbjct: 23  TPTKVQVNVIPEII------NKNDVIGKSKTGSGKTLAFLLPILQIIDSNSKSTEVLILS 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K      I +    G      + K L +      ++II T     D
Sbjct: 77  PTRELAIQITEEANK-FNINDIGILAAYGGKDVGSQLKKLNK----GINLIIATPGRLLD 131

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++   + L  ++        Q L L         ++  A    +TL  ++  D  + K+
Sbjct: 132 HLERKSINLSKLNTVVIDEADQML-LMGFRNEIEKIMSYAPKKLQTLCFSATIDSKVKKL 190

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVE 505
             +      I  +          I++  V  ++  K   +   +EE        F     
Sbjct: 191 AYRYMNNPTIIDITENEESEIPNIKQEVVKTTDRWKVDALVKILEEDNPFMSIIFCRTKR 250

Query: 506 RFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           R + L     +     A IH  +    +E +M SF++   + LIAT V   GIDV   + 
Sbjct: 251 RADELEVKLAAKGIKAAKIHSDVPQNKREKIMKSFRDCEIQFLIATDVASRGIDVTGVTH 310

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           I   +A     + +H++ GR  R  +     L+  P          + L+ T
Sbjct: 311 IYNYDAPESVESYIHRI-GRTARAGDSGYTCLITDPKNYTILEEIENYLQYT 361


>gi|118783118|ref|XP_312776.3| AGAP003089-PA [Anopheles gambiae str. PEST]
 gi|116129059|gb|EAA08469.4| AGAP003089-PA [Anopheles gambiae str. PEST]
          Length = 400

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 133/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+ +I+ I++          I Q   G+GKT    I++  +++      Q + ++
Sbjct: 49  KPSAIQQRSIQPIVKGRDV------IAQAQSGTGKTATFSISILQSMDTTLRETQVLCLS 102

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        +      G        + L+       H++ GT     D
Sbjct: 103 PTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQ----HVVSGTPGRVFD 158

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+           L+L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 159 MIKRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 218

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 219 SKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 271

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++ +HG M   +++ +M  F++G  ++LI T V   GID
Sbjct: 272 FCNTRRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRSGQSRVLITTDVWARGID 331

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S++I  +  +     +H++ GR GR       I        +             D
Sbjct: 332 VQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQID 390

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 391 EMPMNVADL 399


>gi|119182910|ref|XP_001242554.1| hypothetical protein CIMG_06450 [Coccidioides immitis RS]
          Length = 388

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/338 (19%), Positives = 123/338 (36%), Gaps = 23/338 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 18  SPSAIQSRAIVQICKGRDT------IAQAQSGTGKTATFAISILQVIDTALRETQALVLS 71

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + L+       H++ GT     D
Sbjct: 72  PTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLDHGQ----HVVSGTPGRVAD 127

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            I+   L    + +         L         + +     P  + +VL++    D+  +
Sbjct: 128 MIRRRHLRTRHI-KMLVLDEADDLLARGFREQIYDVYRYLPPATQVVVLSATLPYDVLSM 186

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK------ESNFR 501
           T K     P++ ++       E +++  + +  E  K   +C   +           N R
Sbjct: 187 TTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 245

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   GIDV   S
Sbjct: 246 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 305

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           ++I  +        +H++ GR GR       I      
Sbjct: 306 LVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTSE 342


>gi|282852614|ref|ZP_06261956.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus
           gasseri 224-1]
 gi|282556356|gb|EFB61976.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus
           gasseri 224-1]
          Length = 452

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/322 (20%), Positives = 126/322 (39%), Gaps = 32/322 (9%)

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQII 351
             I Q   G+GKT    + +   ++      QA+++ P   LA Q  E + +  ++ +  
Sbjct: 7   DVIGQAQTGTGKTAAFGLPILQNLDKQHDSIQAIVIEPTRELAIQTQEELFRLGRDEKAR 66

Query: 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQ 403
           V+++ G      + +AL++       I++GT     D ++           ++L   DE 
Sbjct: 67  VQVVYGGADIRRQIRALKQ----TPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEM 122

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
              G  Q +           +L  A+   +TL+ ++     I +I EK     P    I 
Sbjct: 123 LDMGFIQDI---------ESILNYASSKHQTLLFSATMPKPILRIGEKFM-HDPEIVKIK 172

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVERFNSLHEHFTSS--- 517
                  +I++  V   E +K   +C  I+ +       F     R + L     +    
Sbjct: 173 GKELTANLIDQYFVRAKENEKFDILCRLIDVQNPDLAVIFGRTKRRVDELTRGLQARGYN 232

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
            A IHG +S   + SV+  F+ G   +L+AT V   G+D+   S +   +      + +H
Sbjct: 233 AAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDISGVSHVYNYDIPQDPDSYVH 292

Query: 578 QLRGRVGRGEEISSCILLYHPP 599
           ++ GR GR  +    +    P 
Sbjct: 293 RI-GRTGRAGQNGMSVTFVTPN 313


>gi|241205862|ref|YP_002976958.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859752|gb|ACS57419.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 580

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/354 (20%), Positives = 132/354 (37%), Gaps = 26/354 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--------GQ 323
           +PT  QE +I  +L+          I     G+GKT    + +   + A          +
Sbjct: 45  TPTPIQEHSIPLLLEGRD------LIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTTR 98

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   L  Q  E +KK+ + + + + ++ G +    ++  LE+       I++ T 
Sbjct: 99  TLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQLEK----GTDILVATP 154

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D I    + L  V         Q L L        +  M      +T++ ++    
Sbjct: 155 GRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKM-VPKKRQTMLFSATMPK 213

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---- 499
            I+ +  +         V  P    D+V + +  V  +  K   +   + E  +      
Sbjct: 214 AIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKSLTENPDGRAMVF 273

Query: 500 --FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   E+     E+   S+A IHG  S   +E  + +F++G+ K LIAT V   GID+
Sbjct: 274 LRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTLIATDVAARGIDI 333

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
              S +   +      A +H++ GR  R       I    P  +K       ++
Sbjct: 334 PAVSHVYNYDLPEVPDAYVHRI-GRTARAGRDGIAIAFCAPDEAKLLRDIERLM 386


>gi|218199270|gb|EEC81697.1| hypothetical protein OsI_25294 [Oryza sativa Indica Group]
          Length = 639

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 136/375 (36%), Gaps = 45/375 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  AI   +           +     GSGKT      + + +             
Sbjct: 192 KPTPVQRYAIPISIAGRD------LMACAQTGSGKTAAFCFPIISGIMRSRPPPRSRGSR 245

Query: 324 -----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A+I++P   L+ Q +E  +K+   T + V +  G  P   + + LER       I
Sbjct: 246 TAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQLRELER----GVEI 301

Query: 379 IIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T     D ++  ++ L ++     DE  R          Q       + M      +
Sbjct: 302 LVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEP--QIRKIVEQMDMPPRGERQ 359

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    +I ++            V    +  D +++R++ VL   K++Y +   + 
Sbjct: 360 TMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKRSY-LMDLLH 418

Query: 494 EKKES-------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            ++ +               +   +   +   +       IHG  +  ++E  + SFK+G
Sbjct: 419 AQRANGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYALRSFKSG 478

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+D+   + +I  +  +     +H++ GR GR  +       ++   
Sbjct: 479 ATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRI-GRTGRAGKSGLATAFFNESN 537

Query: 601 SKNSYTRLSVLKNTE 615
           +  +     +++   
Sbjct: 538 TPLARPLSELMQEAN 552


>gi|149022054|ref|ZP_01836016.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP23-BS72]
 gi|147929898|gb|EDK80887.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP23-BS72]
          Length = 511

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/362 (20%), Positives = 132/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLQDIETLILDEADEMLNMGFLEDIEA-------IISRVPENRQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRS 502
            K       + P    I       E++++  + + E +K   +   ++  +      F  
Sbjct: 188 IKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGR 247

Query: 503 VVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|145352838|ref|XP_001420742.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580977|gb|ABO99035.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 413

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 123/366 (33%), Gaps = 40/366 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  +    LQ          I     GSGKT+  L      +          G  
Sbjct: 24  EPTAIQSQSWPIALQGYD------MISVAKTGSGKTVAFLFPGLMHIAERGNGRNARGPM 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            + +AP   LA Q  E   K+  +  +    + G  P+  + + L      +  I I T 
Sbjct: 78  MLALAPTRELATQIQEECMKFGSSCGVGSVCLYGGAPKGRQLQQLRN----RPQICIATP 133

Query: 384 ALFQDSIQYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D ++   +        +L   D     G   Q R  L         L  TAT  P+
Sbjct: 134 GRLNDLLESRMVDMSSATYVVLDEADRMLDMGFEPQIRKILQHVPVDRQTLFFTAT-WPK 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKT-VIIPINRIDEVIERLKVVLSEGKKAYWICP-- 490
            ++  +        I   P       T  ++    I + IE       E +    +    
Sbjct: 193 AVIRVATA------ILTNPIQVNIGDTDQLVANKDITQTIEVCSGFEKEKRLMEILNNPP 246

Query: 491 -QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
              +  K   F S     + L     +   IIHG     +++ +++ F+ G   +L+AT 
Sbjct: 247 EGCDPLKALVFCSTKRMCDQLGRSVGNLAGIIHGDKEQRERDWILNQFRQGRTPVLVATD 306

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV D +++I  +  +     +H++ GR GR  +               +   + 
Sbjct: 307 VAARGLDVKDCNLVINYDFPNQIEDYVHRI-GRTGRAGKKGWAFSFIDGGEGNMARKLIP 365

Query: 610 VLKNTE 615
           +L++  
Sbjct: 366 ILRDAN 371


>gi|3097266|emb|CAA76677.1| translation initiation factor [Pisum sativum]
          Length = 407

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 136/369 (36%), Gaps = 32/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ A+  I+Q          I Q   G+GKT +  + +   V+      QA+I++
Sbjct: 55  KPSAIQQRAVAPIIQGRDV------IAQAQSGTGKTSMIALTVCQVVDTSVREVQALIVS 108

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I     +  I      G        + LE       H++ GT     D
Sbjct: 109 PTRELATQTEKVILAIGDHINIQAHACIGGKSVGEDIRKLEH----GVHVVSGTPGRVCD 164

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G + ++            V L++ T     L +T
Sbjct: 165 MIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISRTLPHEILEMT 224

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + + D   + L V+         + P ++   
Sbjct: 225 NKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCVIFM------ILSPSLKLLY 278

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+       +   +++ +HG M   +++++M  F+ GT ++LI T V   G+D
Sbjct: 279 SVNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLITTDVWARGLD 338

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S++I  +  +     +H++ GR GR       I        K             D
Sbjct: 339 VQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQID 397

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 398 EMPMNIGDL 406


>gi|257464721|ref|ZP_05629092.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           202]
 gi|257450381|gb|EEV24424.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           202]
          Length = 604

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 82/421 (19%), Positives = 156/421 (37%), Gaps = 52/421 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q++ I  +L           +     GSGKT    + + A ++      Q ++MA
Sbjct: 28  TPSPIQQACIPHLLNGRDV------LGMAQTGSGKTAAFSLPILAQIDPEQRYPQMLVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  +++T+N   I    I G      R     R     A +++GT     
Sbjct: 82  PTRELAIQVADACEQFTKNMRGIRTVTIYGG----QRYDIQIRALKNGAQVVVGTPGRIL 137

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D I+   L        +L   DE  R G  + ++        +          +T + ++
Sbjct: 138 DHIRRGTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPEN---------HQTALFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I +IT++   + P +  I    R    I +   +++  +K   +   +E +    
Sbjct: 189 TMPEPIRRITKRFM-KDPQEVKIQATQRSAPDIAQSYWLVNGFRKNDALLRFLEVEDFDA 247

Query: 500 FRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                           L E      A ++G M+   +E  +D  K+G   +++AT V   
Sbjct: 248 AIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQSREQALDKLKSGRLDIIVATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+   S+++  +      + +H++ GR GR       +L   P   +       ++K 
Sbjct: 308 GIDIDRISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEHLIKK 366

Query: 614 TEDGFLIAEED--LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
             D   I   +  +++R+               +  Q E HD  LE  R+  + + T D 
Sbjct: 367 PIDEVAIPNHEILMEKRRAK---------FKARIEKQLEHHD--LEKYRELLEDLFTADQ 415

Query: 672 D 672
           D
Sbjct: 416 D 416


>gi|305682037|ref|ZP_07404841.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
           14266]
 gi|305658510|gb|EFM48013.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
           14266]
          Length = 721

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 126/344 (36%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +P+  Q   I  +L           +     G+GKT    + + + ++A     QA+I+A
Sbjct: 94  TPSPIQAQTIPVLLDGHDV------LGLAQTGTGKTAAFALPILSLIDADIRHPQALILA 147

Query: 329 PIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           P   LA Q  +  + +  +    I V  I G      +   L R     A I++GT    
Sbjct: 148 PTRELALQVADSFQVFVDHLDGDISVLPIYGGQAYGIQLSGLRR----GAQIVVGTPGRV 203

Query: 387 QDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRT 434
            D ++           L+L   DE    G Q+ +   L        V L +AT     R 
Sbjct: 204 IDHLEKGSLDISELRFLVLDEADEMLNMGFQEDVERILADTPEDKQVALFSATMPSGIRR 263

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L    + D    ++  +      I    + +   +++    +++     +A  +  +   
Sbjct: 264 LSKQYMNDPHEIQVKSETRTNTNITQRFLNVAHRNKLDALTRILEVTEFEAMIMFVRT-- 321

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +   E           + A I+G ++   +E  ++  K+G   +L+AT V   G
Sbjct: 322 ------KFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDILVATDVAARG 375

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +DV   S ++  +      + +H++ GR GR       IL   P
Sbjct: 376 LDVERISHVLNYDIPSDTESYVHRI-GRTGRAGRSGEAILFVTP 418


>gi|187734531|ref|YP_001876643.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424583|gb|ACD03862.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 423

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 144/363 (39%), Gaps = 30/363 (8%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L N+ + +PT  Q + I  +LQ+      ++ + Q   G+GKT    + +   +   +G 
Sbjct: 19  LENLEYKTPTPIQAACIPLLLQN----KDLMGLAQ--TGTGKTAAFALPLIQQLSERSGK 72

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+I++P   LA Q +E I+ Y +   +   +I G +  A + K L     G  
Sbjct: 73  PPGRRVRALILSPTRELAAQIHENIRAYARGLHLSTAVIFGGVGYASQFKELA----GGL 128

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I++ T     D ++   + L  V+          L +        ++  +  P  R   
Sbjct: 129 DILVATPGRLIDHLERRTVSLDGVETLILDEADHMLDMGFAPALKKIV--SKIPRKRHTQ 186

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           + S    D  +   +   +KP    + P +   + +E+   ++    +   +  ++ +++
Sbjct: 187 MFSATMPDNIRQLAQTLLQKPETVRVSPPSSTADRVEQFLCMVGSQSEKRLLTLELLKQQ 246

Query: 497 E--------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           E        +  R   +R  S         + IHG  S   +E ++  F++G   +L+AT
Sbjct: 247 ELPGRTLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERMLREFRSGKTPVLVAT 306

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            +   GIDV D  ++I  +        +H++ GR  R       I L  P   + +    
Sbjct: 307 DIAARGIDVKDVRLVINYDLPEEPEVYVHRI-GRTARAGAAGQAIALCSPEEIRKARNVH 365

Query: 609 SVL 611
            +L
Sbjct: 366 KLL 368


>gi|325128442|gb|EGC51323.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           N1568]
          Length = 462

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 126/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEGRD------IMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET-------IVEATPTDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    +  ++   ++ E+L        K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|318054604|ref|NP_001187599.1| eukaryotic initiation factor 4a-iii [Ictalurus punctatus]
 gi|308323464|gb|ADO28868.1| eukaryotic initiation factor 4a-iii [Ictalurus punctatus]
          Length = 389

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 135/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++            Q   G+GKT    +++   ++      QA+I+A
Sbjct: 38  KPSAIQQRAIKQIIKGRDVS------AQSQSGTGKTATFCVSVLQCLDIQVRETQALILA 91

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 92  PTRELAGQIQKVLLALGDFMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 147

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 148 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 207

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 208 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 260

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G+D
Sbjct: 261 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAGGLD 320

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S+II  +  +     +H++ GR GR       I        +             D
Sbjct: 321 VPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 379

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 380 EMPMNVADL 388


>gi|302408591|ref|XP_003002130.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102]
 gi|261359051|gb|EEY21479.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102]
          Length = 401

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  + +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 49  SPSAVQSRAIVQVCKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRESQALVLS 102

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+       HI+ GT     D
Sbjct: 103 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HIVSGTPGRVAD 158

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 159 MIRRRDLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 209

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 210 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQ 268

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 269 AVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWAR 328

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 329 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTSE 373


>gi|223056271|gb|ACM80368.1| vasa [Lytechinus variegatus]
          Length = 679

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 132/371 (35%), Gaps = 47/371 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA------------AVE 319
            PT  Q+ AI  I   +        +     GSGKT   L+ +              +V 
Sbjct: 252 KPTPVQKYAIPIIGAGLD------LMACAQTGSGKTAAFLLPIITNMITQSGCVSCFSVV 305

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               A+I++P   LA Q     +K+ +NT +   +I G    +H+ + ++        I+
Sbjct: 306 QEPLALIVSPTRELASQIQNEARKFCRNTSLRPVVIYGGTSVSHQTREVQNGCS----IL 361

Query: 380 IGTHALFQDSI--------QYYKLILVIVDEQHRFGVQ-QRLKLTQKATAP-----HVLL 425
           + T     D I        +   LIL   D     G   +  KL      P       L+
Sbjct: 362 VATPGRMHDFIGRGYIGLGKLKYLILDEADRMVDMGFGPEIQKLIDHPHMPPKGERQTLM 421

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT  P  +      L D     +         I+  ++ + + ++  E+L  +L +  
Sbjct: 422 FSATFPPEIQEKARMYLNDYLFLTVGRVGGAASDIEQRVLSVKQYEK-REKLMEILRDQN 480

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +       +E K+ ++F        +L          IHG     ++E  +  FK G   
Sbjct: 481 EDDRTLVFVETKRNADF------LATLLSQSDFHATSIHGDRQQQEREEALRDFKIGRAP 534

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK- 602
           +L+AT+V   G+D+     ++  +        +H++ GR GR          Y       
Sbjct: 535 VLVATSVAARGLDIPKVKHVVNYDLPSDIDEYVHRI-GRTGRVGNTGRSTSFYDADKDVG 593

Query: 603 NSYTRLSVLKN 613
            +   + +L +
Sbjct: 594 IARALIKILAD 604


>gi|156098189|ref|XP_001615127.1| eukaryotic initiation factor [Plasmodium vivax SaI-1]
 gi|148804001|gb|EDL45400.1| eukaryotic initiation factor, putative [Plasmodium vivax]
          Length = 388

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/345 (19%), Positives = 124/345 (35%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  IK IL           ILQ   G+GKT V  +     V       Q +I++
Sbjct: 37  KPSAIQQRGIKPILSGRDV------ILQSQSGTGKTCVFAVGALNCVNRNLSETQVIILS 90

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q  +          + +    G    +   KAL        HII GT      
Sbjct: 91  PTRELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDIKAL----SNGVHIISGTPGRIYH 146

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLT 438
            +           +L++   DE    G ++++    +       ++L +AT     L +T
Sbjct: 147 MLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIVLSSATLPQEVLEIT 206

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK--VVLSEGKKAYWICPQIEE 494
           +       KI  K      + IK   + I +     E L          +A   C     
Sbjct: 207 NKFMHRPVKILVKRDELTLEGIKQFFVSIEKEQWKYETLADLYESLTITQAVVFCNT--- 263

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+      +    ++  +H  MS  +++ +M  F+    ++LI+T +   G
Sbjct: 264 ------KLKVDWLTKKMQEANFTVCKMHAGMSQSERDDIMLKFRQCKFRVLISTDIWGRG 317

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +DV + S+++  +  +   + +H++ GR GR       I      
Sbjct: 318 LDVQEVSLVVNYDLPNSRESYIHRI-GRSGRFGRKGVAINFVKND 361


>gi|332532397|ref|ZP_08408275.1| cold-shock DEAD-box protein A [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038040|gb|EGI74487.1| cold-shock DEAD-box protein A [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 592

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 146/372 (39%), Gaps = 45/372 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P++ Q   I  +L+      R   +     G+GKT    + +   ++      Q +++ 
Sbjct: 5   TPSEIQAQCIPLLLE------RKDVLGLAQTGTGKTAAFALPLLNNIDPSVKQPQILVLT 58

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  ++Y ++   I V  + G    + +  AL R     A +I+ T     
Sbjct: 59  PTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSALRR----GAQVIVATPGRLI 114

Query: 388 DSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVL 437
           D I            L+L   DE  R G    ++   + T       L +AT   +   +
Sbjct: 115 DHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREKQTCLFSATMPKQIQNI 174

Query: 438 T--SLGDIDISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +   + + +   I+ + +    ++ V     +++   ++  L+    EG   +       
Sbjct: 175 SSKYMNNPEQVHISARNSTVSSVEQVFWNASVHKNKAIVRFLEAEQYEGAIVFV------ 228

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R+   +   L E    S A ++G M+   +E  +D  K+G   ++IAT V   
Sbjct: 229 -----RTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNIVIATDVAAR 283

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV   S++I  +      A +H++ GR GR       IL          Y   +++++
Sbjct: 284 GLDVDRLSLVINYDIPQDSEAYVHRI-GRTGRAGRTGKAILFVKH---NERYLLKNIIRH 339

Query: 614 TEDGFLIAEEDL 625
           T+    IA+ +L
Sbjct: 340 TKS--EIAQVEL 349


>gi|325295336|ref|YP_004281850.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065784|gb|ADY73791.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 425

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 98/448 (21%), Positives = 163/448 (36%), Gaps = 70/448 (15%)

Query: 251 IGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           +    N      QK L  + F  PT  Q+ AI   L+          + Q   G+GKT  
Sbjct: 11  MEFTFNQLDLKVQKSLEEMGFESPTPIQKEAIPLALEGYD------IVGQAQTGTGKTAA 64

Query: 310 ALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
             I +   +   E G +A+++ P   LA Q    +    +N  +    I G +    +  
Sbjct: 65  FGIPIIENINSRERGVKAIVLTPTRELAIQVAHELSLIGKNKGVSAYPIYGGVSIERQAN 124

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGV--QQRLKLTQ 416
            L+R   G+  I++GT    +D I    L        +L   D+    G        L++
Sbjct: 125 ILKR---GRNQIVVGTPGRVKDLISRGLLKLDRVRFAVLDEADQMLDMGFIEDIEEILSK 181

Query: 417 KATAPHVLLMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                  LL +AT     R L+   L     +    K      +   II +   D++   
Sbjct: 182 TPREKQTLLFSATMPYEIRKLIDNYLKSGYKTIKVGKNLITPKVHQRIIFVKSEDKLKAL 241

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
            K++      +  +  + +       + + +R        + +   IHG +S   +E+VM
Sbjct: 242 EKLLKEHQGTSTIVFVKTKRDAAEIEKELQKR--------SINARAIHGDLSQRQRENVM 293

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +FK G  K L+AT V   GID+ D  ++I         + +H++ GR GR     + I 
Sbjct: 294 KAFKEGKVKTLVATDVAARGIDIKDVGLVINYELPENPESYVHRI-GRTGRAGREGTAIS 352

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP-ELHD 653
           L                            D ++R+   I G+K     KF      +L  
Sbjct: 353 LVA--------------------------DNEKRRIYRIKGLKHIKPEKFKANDLRDLKQ 386

Query: 654 SLL--------EIARKDAKHIL-TQDPD 672
            LL        E  RK AK +L  +DP+
Sbjct: 387 DLLSADVGKVSEKIRKVAKELLRERDPE 414


>gi|46122961|ref|XP_386034.1| hypothetical protein FG05858.1 [Gibberella zeae PH-1]
 gi|91206664|sp|Q4IAA0|FAL1_GIBZE RecName: Full=ATP-dependent RNA helicase FAL1
          Length = 401

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  + +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 49  SPSAVQSRAIVQVCKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 102

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+       HI+ GT     D
Sbjct: 103 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HIVSGTPGRVAD 158

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 159 MIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLP---------PATQVVVVSAT 209

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 210 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQ 268

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 269 AVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWAR 328

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 329 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTTE 373


>gi|282876512|ref|ZP_06285378.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
           epidermidis SK135]
 gi|281294764|gb|EFA87292.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
           epidermidis SK135]
 gi|329735713|gb|EGG71996.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU028]
          Length = 509

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 136/360 (37%), Gaps = 36/360 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + +  K  Q +       PT  Q+ +I   L+          + Q   G+GKT    I +
Sbjct: 7   LGISDKTVQTLEAMGFKEPTPIQKDSIPYALEG------DDILGQAQTGTGKTGAFGIPL 60

Query: 315 AAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
              V  + G Q++I+AP   LA Q  E ++++++  ++ V  + G MP   + KAL+R  
Sbjct: 61  IEKVVGQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKR-- 118

Query: 373 HGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
                I++GT     D +          + LIL   DE    G    ++           
Sbjct: 119 --GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQ- 175

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                   +T++ ++     I ++ ++      I    +     D  I+    ++ E +K
Sbjct: 176 -------RQTMLFSATMPKAIQELVQQFMKAPKI-IKTMNNEMSDPQIDEYYTIVKELEK 227

Query: 485 AYWICPQIEEKK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
                  ++  +      F     R + L     S       +HG ++   +  V+  FK
Sbjct: 228 FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFK 287

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +L+AT V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 288 NDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|281204115|gb|EFA78311.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1026

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 139/400 (34%), Gaps = 42/400 (10%)

Query: 252 GIPINVEGKIAQKILRNIP-FS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
            I    + +I +        F+ P+  Q  A   +            +     GSGKTL 
Sbjct: 507 PIQFFKDIEIPKIFQPAFQTFTKPSVIQAQAWPIVSTG------ADLVGLAATGSGKTLA 560

Query: 310 ALIAMAAAVEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L+     +    +        A++MAP   LAQQ  E  K   + T I    + G   +
Sbjct: 561 FLLPALMEIIKHPKRKYGATPLALVMAPTRELAQQIEEVCKNVVKGTAIRQLCVYGGTGK 620

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQD--------SIQYYKLILVIVDEQHRFGVQQRLK 413
             + ++L         II+GT     D        ++++  L+L   D     G   +++
Sbjct: 621 GLQVRSLRS----GVDIIVGTPGRLNDLLTPNHLETVKF--LVLDEADRMLDMGFMPQIE 674

Query: 414 LT--QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRKPIKTVIIPIN- 466
               Q       L+ +AT       L++       ++T    E  A     + ++     
Sbjct: 675 KIINQVPKERQTLMFSATWPREVESLSNRFLNKPVRVTVGNTELSANINVHQHIVATTGM 734

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF-NSLHEHFTSSIAIIHGRM 525
              +V + +   + E          I      N +   + F   L+  F  +  ++H   
Sbjct: 735 TRPDVAKMVGEQIQEIHNQDKKDNLI--IVFCNQKRNCDHFSEYLYNEFQMNSVVMHSGK 792

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
               +E  + +FK+    ++IAT V   G+D+ +   ++  +  +     +H++ GR GR
Sbjct: 793 EQYQRERGLANFKSHRIPIMIATDVAARGLDIPNVKAVVNLDFPNNIEDYVHRI-GRTGR 851

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
             +       Y      N      +L+  +     A EDL
Sbjct: 852 AGKKGDSYS-YVSREDNNLRDLAKILQRAKQDIPPALEDL 890


>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
 gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
 gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 481

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 131/379 (34%), Gaps = 47/379 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q +AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQANAIPVVLSGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    A    +  ++  +   D+    +K++     K   +
Sbjct: 203 SPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      A IHG  S  ++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 373

Query: 609 SVLKNTEDGFLIAEEDLKQ 627
            ++K T     ++ E L+ 
Sbjct: 374 KLIKRT-----LSLETLEL 387


>gi|153801803|ref|ZP_01956389.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae MZO-3]
 gi|124122637|gb|EAY41380.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae MZO-3]
          Length = 428

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 144/366 (39%), Gaps = 35/366 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 44  EPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 97

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  E + +      +    + G + +A ++ AL        +I++ T     D 
Sbjct: 98  TRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKAEQQNALAE----NPNILVATTGRLFDL 153

Query: 389 ---SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               ++  ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 154 TQSGLRLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTASVRQTVMCSATFSDD 206

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 207 LKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 266

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S   +E+ +  FKNGT ++LIAT ++  GI +  
Sbjct: 267 AKENADSLTKKLNKAGIVATALHGDKSQTQREAALAEFKNGTTQVLIATDLLARGIHIEQ 326

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPLS----KNSYTRLSVLKNT 614
             ++I           +H++ GR  R  +    + L+ H  +       + T+  +    
Sbjct: 327 LPVVINFELPMHAETYVHRV-GRTARAGQQGIALSLVCHGEMDALNAIRTLTQRQLPVQN 385

Query: 615 EDGFLI 620
            DGF +
Sbjct: 386 LDGFPV 391


>gi|40063513|gb|AAR38313.1| ATP-dependent RNA helicase RhlE [uncultured marine bacterium 581]
          Length = 446

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 128/359 (35%), Gaps = 36/359 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L+          +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQAQAIPAVLEGRDV------MAAAQTGTGKTAGFTLPLLHGLSKGQSAKANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +  Y +   +   ++ G +    +   L +       I+I T  
Sbjct: 77  LVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRLRK----GVDILIATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++ + KL ++I+DE  R      +            +M A P  R  ++ S
Sbjct: 133 RLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDI-------RRIMKALPNKRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +  +   K     P++  + P N     + +    + + +K + +   I +     
Sbjct: 186 ATFSEDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPVDKNQKRHLLVELINQHNWEQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFSRTKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEFKSGKLRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           G+D+     ++  +        +H++ GR GR       I L     ++       +++
Sbjct: 306 GLDIEQLPQVVNLDLPEVAQDYVHRI-GRTGRAGATGQAISLVSADEAQLLQDIERLIQ 363


>gi|322712791|gb|EFZ04364.1| eukaryotic initiation factor 4A-12 [Metarhizium anisopliae ARSEF
           23]
          Length = 402

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  + +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 50  SPSAVQSRAIVQVCKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 103

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+       HI+ GT     D
Sbjct: 104 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HIVSGTPGRVAD 159

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 160 MIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLP---------PATQVVVVSAT 210

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 211 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQ 269

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 270 AVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWAR 329

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 330 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTTE 374


>gi|326316545|ref|YP_004234217.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373381|gb|ADX45650.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 605

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 128/372 (34%), Gaps = 44/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L           +     G+GKT    + M   +  GG        +
Sbjct: 23  TPTPIQAQAIPAVLAGHD------LLAGAQTGTGKTAAFTLPMLHRLTQGGTARPAGGIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA Q  E ++ Y ++  +   +I G +    +   ++R       I++ T 
Sbjct: 77  ALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDRIKR----GVDILVATP 132

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PI 431
               D      +   K+ ++++DE  R      +   +K           LL +AT    
Sbjct: 133 GRLLDLQQQGFLDLSKVEILVLDEADRMLDMGFIHDVKKVLALVPRDKQSLLFSATFSDE 192

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L  T L +    ++T +    + I  VI P+ R  +    L ++         +  +
Sbjct: 193 IRELANTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKQVLLHIIQEHNWSQVLVFTR 252

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +               +   +HG  S   +   +  FK+G  + L+AT + 
Sbjct: 253 T--------KFGANNVAEFLTKNGVNAMALHGNKSQSARTQALAGFKSGDIRALVATDIA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ +   ++     +     +H++ GR GR       + L                
Sbjct: 305 ARGIDIDELPHVVNYEIPNVPEDYVHRI-GRTGRAGASGEAVSLVCMDEEGFMMEIERFT 363

Query: 612 K-----NTEDGF 618
           K        DGF
Sbjct: 364 KQEIPVQVLDGF 375


>gi|270290190|ref|ZP_06196416.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
 gi|270281727|gb|EFA27559.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
          Length = 511

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 128/341 (37%), Gaps = 34/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            PT  Q   I D+L           I Q   G+GKT    + +   V+      QA+I++
Sbjct: 23  EPTPIQAETIPDVLAGKD------IIGQAQTGTGKTAAFGLPILQNVDLDNPNIQAIIVS 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I K  +  +  V+++ G      +  AL+        I++GT     D
Sbjct: 77  PTRELAAQTQAEIFKLGKYKRAKVQVVYGGADIRRQINALKS----HPQIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLTSLGD 442
            I  + + L  V     DE         L   +K       ++  TP   +TL+ ++   
Sbjct: 133 HIGRHTIRLDHVKTLVLDEADDMLDMGFLPDIEK-------IIEQTPSERQTLLFSATMP 185

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---- 498
             I KI  K        T +       +++++  +   E +K   +   I+ +       
Sbjct: 186 APIKKIGVKFMTDPKQVT-VKSKELTADLVDQYYIRSKEFEKFDMLTRIIDVQSPKLAVV 244

Query: 499 --NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+           + A IHG ++   + +++  F++G   +L+AT V   G+D
Sbjct: 245 FGRTKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILVATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +   + +   +      + +H++ GR GR     + +    
Sbjct: 305 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGAHGTSVTFVT 344


>gi|117617930|ref|YP_855071.1| ATP-independent RNA helicase DbpA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559337|gb|ABK36285.1| ATP-independent RNA helicase DbpA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 458

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 84/467 (17%), Positives = 183/467 (39%), Gaps = 67/467 (14%)

Query: 259 GKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
               Q  L ++ +   T  Q  ++  +L           I +   GSGKT    + + A 
Sbjct: 11  SPALQDNLASLGYLQMTPIQAQSLPLVLDGKD------LIAKAKTGSGKTAAFGLGLLAN 64

Query: 318 VEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAH 373
           ++      QA+++ P   LA Q    I++  +    + +  + G  P A +   L     
Sbjct: 65  LDVNRLEVQALVLCPTRELADQVATEIRRLARTLPNVKLVTLCGGTPTAPQSATL----S 120

Query: 374 GQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
             AHI +GT       ++           L+L   D     G  + +         + ++
Sbjct: 121 FGAHIAVGTPGRILKHLEQGTLELDGLKTLVLDEADRMLDMGFGEDI---------NRVI 171

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
             A    +TL+ ++     I++++ +   R P++  +  ++  D  IE+    +  G++ 
Sbjct: 172 SHAPRDRQTLLFSATYPEGIAQMS-RGVQRNPVEVSVESLHE-DSAIEQKLYEVPAGQRL 229

Query: 486 YWICPQIEEKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
             +   +   +        +  R+  +  + L     S++A+ +G +   +++ V+  F 
Sbjct: 230 DALGWLLSHYQPSSCVVFCNTKRACNDVADHLAAKGFSALAL-NGDLEQRERDQVLVRFA 288

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           NG+  +L+AT V   G+D+ +   +I     +     +H++ GR GR  +    + LY P
Sbjct: 289 NGSATILVATDVAARGLDIKELGAVINYELTYDPEVHVHRI-GRTGRAGQQGLALSLYQP 347

Query: 599 PLSK-----NSYTRLSVLKNTEDGF-----LIAEE--DLKQ---RK----EGEILG--IK 637
             ++       Y +  + +    G       IA +   L     RK     G+ILG    
Sbjct: 348 NEAQRVNFIEEYQQAPIPQGDLAGIGRDIKPIAPQMVTLSIDAGRKSKVRAGDILGALTG 407

Query: 638 QSGMPKFLIAQPELHDS--LLEIARKDAKHILTQDPDLTSVRGQSIR 682
           + G+    + + ++ +    + + R+ A   L +  +   ++G+S R
Sbjct: 408 EGGIAGADVGKIQISEQYSYVAVKRQVASAALKRLQE-GKIKGRSYR 453


>gi|153000172|ref|YP_001365853.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|160874799|ref|YP_001554115.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|151364790|gb|ABS07790.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160860321|gb|ABX48855.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315267037|gb|ADT93890.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 451

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 135/388 (34%), Gaps = 42/388 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ ++ Q I       PT  QE A+   L           +     GSGKTL  L+  
Sbjct: 6   FSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKD------LMASSKTGSGKTLAFLLPA 59

Query: 315 AAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              V       +   + +I+ P   LA Q Y  ++    NTQ     + G      + KA
Sbjct: 60  LQRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKAT 419
           L +    + H I+ T     D ++   L        +L   D     G   +LK    A 
Sbjct: 120 LAK----EPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAA 175

Query: 420 AP---HVLLMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  L+ +AT        +  T L +     I    +    I   I   + +D    
Sbjct: 176 DHKRRQTLMFSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEA 235

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L  +L +      I            R   ER  +       + A + G +    +  +
Sbjct: 236 LLARLLKDETHKQVIIFT-------ATRPDTERLAAKLTAQGFATAALSGDLKQAARNQI 288

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           MD F  G  ++L+ T V   G+D+++ S+++  +   F    +H++ GR GR       I
Sbjct: 289 MDQFARGQQQVLVTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRI-GRTGRAGAKGDAI 347

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            L  P    N       L+ T   F I+
Sbjct: 348 SLVGPKDWDNFKKVQVFLRKT---FEIS 372


>gi|56461091|ref|YP_156372.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
 gi|56180101|gb|AAV82823.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 594

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/428 (18%), Positives = 154/428 (35%), Gaps = 45/428 (10%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIM 327
            +PT  Q  AI  +L+          + +   G+GKT    +   A ++A     Q +++
Sbjct: 29  LTPTPIQLQAIPALLEGQDV------LGEAQTGTGKTAAFGLPALAKIDASVKQTQVLVV 82

Query: 328 APIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P   LA Q  E ++ +  +   + V  + G  P   + KAL++       I++GT    
Sbjct: 83  TPTRELAIQVAEALEGFAAKMRGVGVATVYGGAPFGPQVKALKQGTA----IVVGTPGRL 138

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRT 434
            D +    L        +L   DE    G  + +   L          L +AT     R 
Sbjct: 139 IDLLNKNVLQLDGLKVGVLDEADEMLNMGFIEDIETILKAVPNTAQRALFSATMPNAIRK 198

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L  T L D    +I      +  IK     +  + ++    +++     +   I  +   
Sbjct: 199 LAKTFLKDPLNIQIEAIAREKATIKQKAWKVQGMTKMTALTRLLEVTPYQRALIFVRT-- 256

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R        L +      A + G ++   +E  +   ++G  ++L+ T V+  G
Sbjct: 257 ------RQDTMDVAELLQRNGFKAAPLSGDLNQAQREQTVSQLRSGHIEILVGTDVVARG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV + + +I  +      + +H++ GR GR       IL +             +    
Sbjct: 311 LDVPEITHVINYDLPSDTESYVHRI-GRTGRAGRTGEAILFFRAKERHLLRHYERLTNAP 369

Query: 615 EDGFLI--AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI--------ARKDAK 664
            + F +  A E  K R++  +  ++ S  P+   A     + LL          A + A 
Sbjct: 370 VEFFEVPNANELSKYRQQQLLEKLQASLAPETASADKPKLEKLLGEWLEQSELSAEEIAL 429

Query: 665 HILTQDPD 672
            +L Q  +
Sbjct: 430 ALLAQHNE 437


>gi|115471073|ref|NP_001059135.1| Os07g0202100 [Oryza sativa Japonica Group]
 gi|75325411|sp|Q6Z4K6|RH52B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52B; AltName:
           Full=OsPL10b
 gi|34393986|dbj|BAC83834.1| putative DEAD-box RNA helicase DEAD3 [Oryza sativa Japonica Group]
 gi|113610671|dbj|BAF21049.1| Os07g0202100 [Oryza sativa Japonica Group]
 gi|222636630|gb|EEE66762.1| hypothetical protein OsJ_23477 [Oryza sativa Japonica Group]
          Length = 638

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 136/375 (36%), Gaps = 45/375 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  AI   +           +     GSGKT      + + +             
Sbjct: 191 KPTPVQRYAIPISIAGRD------LMACAQTGSGKTAAFCFPIISGIMRSRPPPRSRGSR 244

Query: 324 -----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A+I++P   L+ Q +E  +K+   T + V +  G  P   + + LER       I
Sbjct: 245 TAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQLRELER----GVEI 300

Query: 379 IIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T     D ++  ++ L ++     DE  R          Q       + M      +
Sbjct: 301 LVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEP--QIRKIVEQMDMPPRGERQ 358

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    +I ++            V    +  D +++R++ VL   K++Y +   + 
Sbjct: 359 TMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKRSY-LMDLLH 417

Query: 494 EKKES-------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            ++ +               +   +   +   +       IHG  +  ++E  + SFK+G
Sbjct: 418 AQRANGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYALRSFKSG 477

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+D+   + +I  +  +     +H++ GR GR  +       ++   
Sbjct: 478 ATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRI-GRTGRAGKSGLATAFFNESN 536

Query: 601 SKNSYTRLSVLKNTE 615
           +  +     +++   
Sbjct: 537 TPLARPLSELMQEAN 551


>gi|304385542|ref|ZP_07367886.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
           acidilactici DSM 20284]
 gi|304328046|gb|EFL95268.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
           acidilactici DSM 20284]
          Length = 511

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 128/341 (37%), Gaps = 34/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            PT  Q   I D+L           I Q   G+GKT    + +   V+      QA+I++
Sbjct: 23  EPTPIQAETIPDVLAGKD------IIGQAQTGTGKTAAFGLPILQNVDLDNPNIQAIIVS 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I K  +  +  V+++ G      +  AL+        I++GT     D
Sbjct: 77  PTRELAAQTQAEIFKLGKYKRAKVQVVYGGADIRRQINALKS----HPQIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLTSLGD 442
            I  + + L  V     DE         L   +K       ++  TP   +TL+ ++   
Sbjct: 133 HIGRHTIRLDHVKTLVLDEADDMLDMGFLPDIEK-------IIEQTPSERQTLLFSATMP 185

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---- 498
             I KI  K        T +       +++++  +   E +K   +   I+ +       
Sbjct: 186 APIKKIGVKFMTDPKQVT-VKSKELTADLVDQYYIRSKEFEKFDMLTRIIDVQSPKLAVV 244

Query: 499 --NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+           + A IHG ++   + +++  F++G   +L+AT V   G+D
Sbjct: 245 FGRTKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILVATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +   + +   +      + +H++ GR GR     + +    
Sbjct: 305 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGAHGTSVTFVT 344


>gi|148984940|ref|ZP_01818193.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|307127794|ref|YP_003879825.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
 gi|147922962|gb|EDK74078.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|301800413|emb|CBW33045.1| DEAD box helicase family protein [Streptococcus pneumoniae OXC141]
 gi|306484856|gb|ADM91725.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
          Length = 524

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/362 (20%), Positives = 132/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLQDIETLILDEADEMLNMGFLEDIEA-------IISRVPENRQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRS 502
            K       + P    I       E++++  + + E +K   +   ++  +      F  
Sbjct: 188 IKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGR 247

Query: 503 VVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVSPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|91200410|emb|CAJ73457.1| strongly similar to ATP-dependent RNA helicase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 524

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 129/348 (37%), Gaps = 43/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            PT  Q+  I  IL           + Q   G+GKT    + +   +       QA+++ 
Sbjct: 24  EPTPIQQKTIPAILSGTK-----DIVGQAQTGTGKTAAFGLPVLELLPEKSKNVQALVLT 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E +       ++ +  I G      + ++L++       I++GT     D
Sbjct: 79  PTRELAIQVAEELNSLKGKKRLSIVPIYGRQSMELQLRSLKK----GIDIVVGTPGRVLD 134

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            ++   L        +L   DE    G    ++   + T             RTL+ ++ 
Sbjct: 135 HLKRGTLKIGKISFLVLDEADEMLNMGFIDDVREIMENTGHE---------KRTLLFSAT 185

Query: 441 GDIDISKITEKPAGRKPIKTV---IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
              +I +I +       ++ V    + +++ D++       +    K   +C  I+ +K+
Sbjct: 186 MPFEIMQIAKNYMRDFDVQKVNAGQLTVSQTDQIY----FEVFAADKFEALCRIIDIEKD 241

Query: 498 ------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +  V+   S           +HG +S   +E ++  FK     +LIAT V 
Sbjct: 242 FYGLVFCRTKIDVDAVASHLIERGYDADALHGDISQSLREKILAKFKKRQINILIATDVA 301

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+ + S +I  +      + +H++ GR GR  +    I    P 
Sbjct: 302 ARGLDIHNLSHVINYSLPQDPESYVHRI-GRTGRAGKGGIAITFITPE 348


>gi|57867605|ref|YP_189253.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis
           RP62A]
 gi|293366046|ref|ZP_06612734.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81673916|sp|Q5HME0|Y1688_STAEQ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SERP1688
 gi|57638263|gb|AAW55051.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           epidermidis RP62A]
 gi|291319769|gb|EFE60127.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726161|gb|EGG62633.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU144]
 gi|329734135|gb|EGG70453.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU045]
          Length = 509

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 136/360 (37%), Gaps = 36/360 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + +  K  Q +       PT  Q+ +I   L+          + Q   G+GKT    I +
Sbjct: 7   LGISDKTVQTLEAMGFKEPTPIQKDSIPYALEG------DDILGQAQTGTGKTGAFGIPL 60

Query: 315 AAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
              V  + G Q++I+AP   LA Q  E ++++++  ++ V  + G MP   + KAL+R  
Sbjct: 61  IEKVVGQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKR-- 118

Query: 373 HGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
                I++GT     D +          + LIL   DE    G    ++           
Sbjct: 119 --GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQ- 175

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                   +T++ ++     I ++ ++      I    +     D  I+    ++ E +K
Sbjct: 176 -------RQTMLFSATMPKAIQELVQQFMKAPKI-IKTMNNEMSDPQIDEYYTIVKELEK 227

Query: 485 AYWICPQIEEKK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
                  ++  +      F     R + L     S       +HG ++   +  V+  FK
Sbjct: 228 FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFK 287

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +L+AT V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 288 NDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|52078994|ref|YP_077785.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis ATCC 14580]
 gi|52784366|ref|YP_090195.1| YdbR [Bacillus licheniformis ATCC 14580]
 gi|81691189|sp|Q65N62|CSHA_BACLD RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|52002205|gb|AAU22147.1| probable ATP-dependent RNA helicase YdbR [Bacillus licheniformis
           ATCC 14580]
 gi|52346868|gb|AAU39502.1| YdbR [Bacillus licheniformis ATCC 14580]
          Length = 487

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 81/436 (18%), Positives = 154/436 (35%), Gaps = 44/436 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           ++ + F   T  Q   I   L +         I Q   G+GKT    I +   +      
Sbjct: 18  IKRMGFEEATPIQAQTIPLGLANKDV------IGQAQTGTGKTAAFGIPLVEKINPESPN 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++AP   LA Q  E + K  Q+ +  V  I G      + +AL++      HII+G
Sbjct: 72  IQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKK----NPHIIVG 127

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT-- 429
           T     D I            ++L   DE    G  + +   L+        LL +AT  
Sbjct: 128 TPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMP 187

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            PI R +    + + +  K+  K      I+   + ++   +     +++  +  +   +
Sbjct: 188 APIKR-IAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQSPELAIV 246

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +         +  V+           +   IHG ++   +   +  FK G  ++L+AT
Sbjct: 247 FGRT--------KRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVAT 298

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+   + +   +      + +H++ GR GR  +    +    P          
Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRI-GRTGRAGKTGMAMTFITPREKDMLRAIE 357

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL--HDSLLE-----IARK 661
              K   D       D     + ++   +   + +       +     LLE         
Sbjct: 358 QTTKRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAELLEDHDSVTVVA 417

Query: 662 DAKHILTQDPDLTSVR 677
            A  ++T++PD T VR
Sbjct: 418 AAIKMMTKEPDNTPVR 433


>gi|330997890|ref|ZP_08321724.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329569494|gb|EGG51264.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 483

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/353 (19%), Positives = 131/353 (37%), Gaps = 36/353 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ F+  T  QE AI  IL+       M+ + Q   G+GKT   L+ + + +  GG  
Sbjct: 16  LDDMNFTECTPIQEHAIPVILEG----RDMIGVAQ--TGTGKTAAFLLPILSKLSDGGYP 69

Query: 323 ----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                 +IM+P   LAQQ  + ++ ++    +    + G        +    +A G A +
Sbjct: 70  EKAINCIIMSPTRELAQQIDQAMEGFSYYMNVSSVAVYGGNDGIRYEQEKRGLAMG-ADV 128

Query: 379 IIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           II T       +    + L  V     DE  R        L    +   + ++   P  R
Sbjct: 129 IIATPGRLISHLSLGNVDLSEVSFFVLDEADRM-------LDMGFSDDIMQIVKYLPKER 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
             ++ S       +   +     P++  +      D++++    V  E +K   +     
Sbjct: 182 QTIMFSATMPRKIQDLARTILHDPVEVKLAVSKPADKIVQS-AYVCYEAQKVSLVKKLFA 240

Query: 494 EKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E+              V +   +L       +  +H  +   +++ VM  FK     +L+
Sbjct: 241 ERPPHRVIVFASSKLKVKDMAIALGRAG-FKVGAMHSDLEQQERDEVMYKFKAQQIDVLV 299

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           AT ++  GID+ D  ++I  +  H     +H++ GR  R       I L    
Sbjct: 300 ATDIVARGIDIDDIQLVINFDVPHDAEDYVHRI-GRTARANNDGEAITLVSEK 351


>gi|310800687|gb|EFQ35580.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 401

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  + +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 49  SPSAVQSRAIVQVCKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 102

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+       HI+ GT     D
Sbjct: 103 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HIVSGTPGRVAD 158

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 159 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 209

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 210 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQ 268

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 269 AVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWAR 328

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 329 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTSE 373


>gi|298484048|ref|ZP_07002217.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
 gi|298269829|gb|EFI11421.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
          Length = 420

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 129/362 (35%), Gaps = 43/362 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE AI  IL+          I     G+GKT   L+ +   +  G         VIM
Sbjct: 25  TPIQEQAIPIILEGKD------LIAVAQTGTGKTAAFLLPVLNKLSEGKHPEDAINCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ ++    +    + G        +  + +  G A ++I T     
Sbjct: 79  SPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLTLG-ADVVIATPGRLI 137

Query: 388 DS-----IQYYKLILVIVDE---QHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVL 437
                  +   K+   I+DE       G  + +             ++ +AT   +   L
Sbjct: 138 AHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKERQTIMFSATMPAKIQQL 197

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +    D S+I              + +++  E I +   V  E +K   I     ++  
Sbjct: 198 ANTILNDPSEIK-------------LAVSKPAEKIIQAAYVCYENQKLGIIRSLFMDEVP 244

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +  V+      +    ++  +H  +    +E+VM  FK G   +L+AT ++
Sbjct: 245 ERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDIV 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ D  ++I  +  H     +H++ GR  R       +   +     N  +  + L
Sbjct: 305 ARGIDIDDIRLVINFDVPHDSEDYVHRI-GRTARANNDGVALTFINEKEQSNFKSIENFL 363

Query: 612 KN 613
           + 
Sbjct: 364 EK 365


>gi|289665420|ref|ZP_06487001.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 460

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 134/372 (36%), Gaps = 37/372 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q+ AI  +L           +     G+GKT    + +   +    Q        
Sbjct: 23  TPTAIQQQAIPLVLAGHD------LLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPRKP 76

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+ P   LA Q ++ ++ Y++  +I   +I G +   ++  AL R       ++I  
Sbjct: 77  RALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRR----GVDLLIAC 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D I+   + L  ++        + L +    +   +L        +TL+ ++  +
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFE 192

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
            +I ++      R P++  + P N + E I      +   +K   +   + +        
Sbjct: 193 ENIKQLA-LEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLV 251

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   ++     E      A IHG  S   +   +  FK G   +L+AT +   GID
Sbjct: 252 FARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +     +I  +        +H++ GR GR       I L     +K     + +L     
Sbjct: 312 IDQLPKVINYDLPMVAEDYVHRI-GRTGRNGSTGEAISLVAQDEAKLLRQIVRMLG---- 366

Query: 617 GFLIAEEDLKQR 628
                  D++ R
Sbjct: 367 ------RDVEIR 372


>gi|157105113|ref|XP_001648723.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108869079|gb|EAT33304.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 400

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 131/369 (35%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+ +I  I++          I Q   G+GKT    IA+  +++      Q + ++
Sbjct: 49  KPSAIQQRSILPIVKGRDV------IAQAQSGTGKTATFSIAILQSMDTTLRETQVLCLS 102

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        +      G        + L+       H++ GT     D
Sbjct: 103 PTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQ----HVVSGTPGRVFD 158

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+           L+L   DE    G ++++         A  V L++AT     L +T
Sbjct: 159 MIKRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMT 218

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 219 SKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 271

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   +++ +M  F++G  ++LI T V   GID
Sbjct: 272 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRSGQSRVLITTDVWARGID 331

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S++I  +  +     +H++ GR GR       I        +             D
Sbjct: 332 VQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQID 390

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 391 EMPMNVADL 399


>gi|134296873|ref|YP_001120608.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134140030|gb|ABO55773.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 486

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 124/357 (34%), Gaps = 29/357 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----------EAG 321
           SPT  Q+ AI  +L           +     G+GKT    + +   +          +  
Sbjct: 23  SPTPIQQQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHTFYTEHRGAKRA 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R       I++ 
Sbjct: 77  VRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----GVDIVVA 132

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +Q   + L  +D         R+           +L    P  + L+ ++  
Sbjct: 133 TPGRLLDHMQQKTIDLSDLD-ILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATF 191

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-- 499
             +I  + +      P    +   N   E + +    +   +K   +   I E       
Sbjct: 192 SDEIKALADSLLD-SPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVL 250

Query: 500 ----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +    R          S   IHG  S   +   +  FKN T ++L+AT +   GI
Sbjct: 251 VFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGI 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           D+     ++  +  +     +H++ GR GR       + L      +       ++K
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLVCVDEKQLLRDIERLIK 366


>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
          Length = 397

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 131/379 (34%), Gaps = 47/379 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAKAIPVVLSGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATP 430
            T     D +Q           L+L   D     G    L+            LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L D    ++    A    +  ++  +   D+    +K++     K   +
Sbjct: 203 SPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      A IHG  S  ++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+V+   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIVELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 373

Query: 609 SVLKNTEDGFLIAEEDLKQ 627
            ++K T     ++ E L+ 
Sbjct: 374 KLIKRT-----LSLETLEL 387


>gi|148358461|ref|YP_001249668.1| DEAD box family transporter ATP-dependent RNA helicase [Legionella
           pneumophila str. Corby]
 gi|148280234|gb|ABQ54322.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
           str. Corby]
          Length = 414

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 133/360 (36%), Gaps = 39/360 (10%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +   + +  + ++ PT  Q  AI  IL           +     G+GKT   ++ +    
Sbjct: 10  EPLNRAVSELGYTNPTSIQLKAIPLILNGHD------LLGSAQTGTGKTASFVLPILQKA 63

Query: 319 EAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
               Q        +I+ P   LA Q +E I +Y +   +   +I G +   ++ K L+  
Sbjct: 64  SQQTQTSRNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDS- 122

Query: 372 AHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAP 421
                 I++ T     D     ++++ ++  +++DE  R      +   +K         
Sbjct: 123 ---GLEILVATPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKR 179

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
             LL +AT  P  RTL    L       I  +    K IK  +  ++R  ++     ++ 
Sbjct: 180 QNLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLH 239

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
                   +  + +           +    L E    S+AI HG  S   +   +  FK+
Sbjct: 240 KNNWGQTLVFSRTKHGA-------NKLVKQLAESQIYSVAI-HGNKSQAQRTKALADFKS 291

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  + LIAT +   GID+   + ++  +  H     +H++ GR GR       + L    
Sbjct: 292 GKVQTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRI-GRTGRAGASGLAVSLVSTE 350


>gi|117621566|ref|YP_856876.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562973|gb|ABK39921.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 466

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 144/387 (37%), Gaps = 46/387 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +P+  Q+ AI  +L           +     G+GKT    + M   +    +        
Sbjct: 23  TPSPIQQQAIPAVLAGRD------LMAAAQTGTGKTAGFTLPMLQRLTESKRKVSPNRIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA Q  E ++ Y ++  I   ++ G +    +  A  R       +++   
Sbjct: 77  ALVLTPTRELAAQVGESVRNYGKHLPIRSHVVFGGVSINPQMMATRR----GLDVLVACP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PI 431
               D     ++++ ++ ++++DE  R      ++  ++           LL +AT    
Sbjct: 133 GRLMDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRRILALLPKKRQNLLFSATFADE 192

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L    L +  + ++  + +  + I+ ++ P ++ +++     +V S   +   +  +
Sbjct: 193 IRELATGLLDNPAVIEVAPRNSTAERIEQLVHPCDKANKIALLSHLVTSNNWQQVLVFTR 252

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    + +  R     +    S A IHG  S   +   +  FK+G+ K+L+AT + 
Sbjct: 253 T--------KHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGSVKVLVATDIA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     ++     +     +H++ GR GR       I L      K       + 
Sbjct: 305 ARGLDIDKLPQVVNFELPNVAEDYVHRI-GRTGRAGAAGHAISLVAADEGKLIKAIERLT 363

Query: 612 KNTE-----DGFLIAEEDLK--QRKEG 631
           K         GF  + E L    R  G
Sbjct: 364 KQNIPCEQVAGFEASRETLDNIARGIG 390


>gi|91206662|sp|Q4WEB4|FAL1_ASPFU RecName: Full=ATP-dependent RNA helicase fal1
          Length = 398

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 127/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I +   ++      QA++++
Sbjct: 46  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSIGILQVIDTVVRETQALVLS 99

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + L+       H++ GT     D
Sbjct: 100 PTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQ----HVVSGTPGRVAD 155

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 156 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 206

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E I++  + +  E  K   +C   +      
Sbjct: 207 LPYDVLDMTTKFMT-DPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQ 265

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 266 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 325

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 326 GIDVQQVSLVINYDLPTNRENYIHRI-GRSGRFGRKGVAINFVTSD 370


>gi|254526904|ref|ZP_05138956.1| DbpA RNA binding domain family protein [Prochlorococcus marinus
           str. MIT 9202]
 gi|221538328|gb|EEE40781.1| DbpA RNA binding domain family protein [Prochlorococcus marinus
           str. MIT 9202]
          Length = 593

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 139/374 (37%), Gaps = 43/374 (11%)

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           ++   +   +       I   ++     +PT  Q++AI +++           + Q   G
Sbjct: 45  KRDDNENGFLDFGFNQSILNSLINKGYKNPTPIQKAAIPELMLGRD------LLGQAQTG 98

Query: 304 SGKTLVALIAMAAAVEAGG----QAVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGN 358
           +GKT    + +   +        + ++M P   LA Q    F    ++++      I G 
Sbjct: 99  TGKTAAFALPLIEKLTDNKELNAKVLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGG 158

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQ 410
               ++  AL+R    +  +++GT     D I+           L+L   DE    G  +
Sbjct: 159 TDYRNQISALKR----KVDVVVGTPGRIMDHIRQGTFKIKHINCLVLDEADEMLNMGFLE 214

Query: 411 RLKLT--QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
            ++    Q      ++L +AT              +I  I +K     P + +I  + + 
Sbjct: 215 DIEWIIDQLPENKQMVLFSAT-----------MPSEIKNIAKKYLN-DPAEILIKSVKKE 262

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF-----NSLHEHFTSSIAIIHG 523
            ++I +  + +    K   +   +E   E     V  +          E+   ++A+++G
Sbjct: 263 TQLISQKFLYVQRHHKLDALKRILELNNEGVIIFVRTKLLTTSIAEALENSGHTVAVLNG 322

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +    +E+ +D  K G   +L+AT V   G+DV    +++  +         H++ GR 
Sbjct: 323 DIPQNQRENTVDRLKKGFINILVATDVAARGLDVERIKLVVNYDFPFDKETYTHRI-GRT 381

Query: 584 GRGEEISSCILLYH 597
           GR       IL  +
Sbjct: 382 GRAGRSGEAILFVN 395


>gi|221211314|ref|ZP_03584293.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD1]
 gi|221168675|gb|EEE01143.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD1]
          Length = 480

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 124/357 (34%), Gaps = 29/357 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----------EAG 321
           SPT  Q+ AI  +L           +     G+GKT    + +   +          +  
Sbjct: 23  SPTPIQQQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHTFYTEHRSAKRA 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R       I++ 
Sbjct: 77  VRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKR----GVDIVVA 132

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +Q   + L  +D         R+           +L    P  + L+ ++  
Sbjct: 133 TPGRLLDHMQQKTIDLSDLD-ILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATF 191

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-- 499
             +I  + +      P    +   N   E + +    +   +K   +   I E       
Sbjct: 192 SDEIKALADSLLD-SPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVL 250

Query: 500 ----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +    R          S   IHG  S   +   +  FKN T ++L+AT +   GI
Sbjct: 251 VFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGI 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           D+     ++  +  +     +H++ GR GR       + L      +       ++K
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLVCVDEKQLLRDIERLIK 366


>gi|84516715|ref|ZP_01004073.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
 gi|84509183|gb|EAQ05642.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
          Length = 498

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/387 (16%), Positives = 134/387 (34%), Gaps = 48/387 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N++ K+ + +      +PT  Q+ AI   L+          +     G+GKT    + M
Sbjct: 7   MNLDPKVLKAVAETGYDTPTPIQDGAIPPALEGRDV------LGIAQTGTGKTAAFTLPM 60

Query: 315 AAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
              +  G       +++++AP   LA Q  E    Y + T++   ++ G      + K +
Sbjct: 61  ITLLGRGRARARMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGTSFKDQDKLI 120

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKA 418
           ++       ++I T     D ++  KLIL  V        D     G          +  
Sbjct: 121 DK----GVDVLIATPGRLLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIFKRTP 176

Query: 419 TAPHVLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVII----------PIN 466
                L  +AT  P    +  T L +    ++         IK  ++             
Sbjct: 177 FTRQTLFFSATMAPEIERITNTFLSNPAKVEVARAATTNVNIKQGVVMFRASAKLREATE 236

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
           +   +   +         A   C +         ++ V+        +    A IHG + 
Sbjct: 237 KRALLRALINAEGDACSNAIIFCNR---------KADVDVVAKSLNKYGYDAAPIHGDLE 287

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              +   ++SF++   + L+A+ V   G+D+   + +   +        +H++ GR GR 
Sbjct: 288 QSHRTRTLESFRDNKLRFLVASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRI-GRTGRA 346

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKN 613
                 I++      KN      +++N
Sbjct: 347 GRSGVAIMICSGRDEKNLEDVERLVQN 373


>gi|126696546|ref|YP_001091432.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543589|gb|ABO17831.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9301]
          Length = 593

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 131/345 (37%), Gaps = 43/345 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMA 328
           PT  Q++AI +++           + Q   G+GKT    + +   +        + ++M 
Sbjct: 74  PTPIQKAAIPELMLGRD------LLGQAQTGTGKTAAFALPLIEKLTDNKELNAKVLVMT 127

Query: 329 PIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    F    ++++      I G     ++  AL+R    +  +++GT     
Sbjct: 128 PTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKR----KVDVVVGTPGRIM 183

Query: 388 DSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVL 437
           D I+           L+L   DE    G  + ++    Q      ++L +AT        
Sbjct: 184 DHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSAT-------- 235

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                 +I  I +K     P + +I  + +  ++I +  + +    K   +   +E   E
Sbjct: 236 ---MPNEIRNIAKKYLN-DPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNNE 291

Query: 498 SNFRSVVERF-----NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                V  +          E+   ++A+++G +    +E+ +D  K G   +L+AT V  
Sbjct: 292 GVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAA 351

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            G+DV    +++  +         H++ GR GR       IL  +
Sbjct: 352 RGLDVERIKLVVNYDFPFDKETYTHRI-GRTGRAGRSGEAILFVN 395


>gi|76808776|ref|YP_332762.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           1710b]
 gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           1710b]
          Length = 559

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 125/368 (33%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 110 TPTPIQAKAIPVVLSGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 163

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 164 PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 219

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 220 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 279

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    A    +  ++  +   D+    +K++     K   +
Sbjct: 280 SPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVIV 339

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      A IHG  S  ++   +D+FK G  + L+AT
Sbjct: 340 F--------CNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVAT 391

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 392 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 450

Query: 609 SVLKNTED 616
            ++K T  
Sbjct: 451 KLIKRTLS 458


>gi|325271305|ref|ZP_08137840.1| ATP-dependent RNA helicase DbpA [Pseudomonas sp. TJI-51]
 gi|324103564|gb|EGC00876.1| ATP-dependent RNA helicase DbpA [Pseudomonas sp. TJI-51]
          Length = 461

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 171/452 (37%), Gaps = 61/452 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  Q  ++  IL+          I Q   GSGKT    I +   +     G QA+++ P 
Sbjct: 30  TPIQAQSLPVILKGQD------LIAQAKTGSGKTAAFGIGLLNPINPRYFGCQALVLCPT 83

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + +++  +    I +  + G +    +  +LE      AHII+GT    Q  
Sbjct: 84  RELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH----GAHIIVGTPGRIQQH 139

Query: 390 IQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDI 443
           +    L+L      ++DE  R                   ++  TP  R TL+ ++    
Sbjct: 140 LDKGTLVLDGLNTLVLDEADRMLDMGFFDAIAS-------IIGKTPSRRQTLLFSATYPA 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
            I ++          + V +     D  IE+  + +   ++   +   +   +  +  + 
Sbjct: 193 GIKQLAADFMRNP--QQVKVESLHTDNQIEQRFIEIDPEQRLEAVTRVLGHYRPQSCVAF 250

Query: 504 V---ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
               ++   +  H T+       +HG +   D++ V+  F N +  +L+AT V   G+D+
Sbjct: 251 CFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVAARGLDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK----- 612
               ++I           +H++ GR GR  E    + L  P     +     + K     
Sbjct: 311 DGLDMVINVELARDAEIHVHRV-GRTGRAGEKGLAVSLVAPAEGHRAQAIEQLQKSPLRW 369

Query: 613 ------NTEDG---------FLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQPELHD-- 653
                  ++ G           IA     + + G+ILG     +G+P   + +  + D  
Sbjct: 370 DQLDSLKSKGGEPLLPVMSTLCIAAGRKDKLRPGDILGALTGDAGIPGKQVGKIAIFDFQ 429

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           + + + R  AK  + +  +   ++G+S+++ +
Sbjct: 430 AFVAVERALAKQAMQRL-NSGKIKGRSLKVRI 460


>gi|240080542|ref|ZP_04725085.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA19]
 gi|240118143|ref|ZP_04732205.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|240123692|ref|ZP_04736648.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268596673|ref|ZP_06130840.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268603859|ref|ZP_06138026.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682325|ref|ZP_06149187.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268550461|gb|EEZ45480.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268587990|gb|EEZ52666.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268622609|gb|EEZ55009.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
          Length = 462

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 128/347 (36%), Gaps = 45/347 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEG------CDIMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++AP   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTSFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET-------IVEATPADRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEK 495
           ++  D  + K+  K        + II + R+D    IE   +   + +    +   I   
Sbjct: 188 SATWDGAVGKLARK----LTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRD 243

Query: 496 KESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +        +++ E           +   +HG M    +   +   + G CK+L+AT
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|224286258|gb|ACN40838.1| unknown [Picea sitchensis]
          Length = 411

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 126/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+  I    Q +        I Q   G+GKT      +   +       QA+++A
Sbjct: 60  KPSAIQQRGIVPFCQGLDV------IQQAQSGTGKTATFCSGILQQLNYNVPECQALVLA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++      Q+ V    G        + L+       H+++GT     D
Sbjct: 114 PTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQA----GVHVVVGTPGRVYD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   T   V + +AT  P  L +T
Sbjct: 170 MLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPTNLQVGVFSATMPPEALEIT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                +  +I  K      + IK   + + R D  ++ L          Y      +   
Sbjct: 230 RKFMTNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTL-------CDLYETLAITQSVI 282

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 283 FINTRRKVDWLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 342

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 343 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTKD 384


>gi|220913497|ref|YP_002488806.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
 gi|219860375|gb|ACL40717.1| DEAD/DEAH box helicase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 694

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/391 (18%), Positives = 139/391 (35%), Gaps = 47/391 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + ++G++   +       P+  Q + I  +L+          +     G+GKT    +  
Sbjct: 55  LGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDV------VGLAQTGTGKTAAFAVPA 108

Query: 315 AAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHR 364
            + +             QA+++AP   LA Q  E    Y ++     V  + G      +
Sbjct: 109 LSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQ 168

Query: 365 RKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRL--KL 414
              L R     A +++GT     D I        +   L+L   DE  R G  + +    
Sbjct: 169 LAGLRR----GAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIF 224

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT--EKPAGRKPIKTV---IIPINRID 469
            Q      V L +AT   +   ++     D ++I+   K +    I+     I+   ++D
Sbjct: 225 QQTPEDRQVALFSATMPGQIRRMSKQYLNDPAEISVKTKTSTGTNIRQRYLQIMGPQKLD 284

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            +   L+V   +G  A+              +   E      +      A I+G +    
Sbjct: 285 AMTRILEVEEFDGVIAFV-----------RTKMATEDLADKLKSRGFQAAAINGDIPQQQ 333

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E  +D+ K G   +L+AT V   G+DV   S +I  +  H   + +H++ GR GR    
Sbjct: 334 RERTVDALKEGRIDILVATDVAARGLDVERISHVINYDIPHDTESYVHRI-GRTGRAGRN 392

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
              IL   P             + + +   +
Sbjct: 393 GDAILFMTPREKYLLRAIEKATRQSVEQMHL 423


>gi|145298914|ref|YP_001141755.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851686|gb|ABO90007.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 467

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 133/386 (34%), Gaps = 44/386 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +P+  Q  AI  +L           +     G+GKT    + M   +    +        
Sbjct: 23  TPSPIQLQAIPAVLAGRD------LMAAAQTGTGKTAGFTLPMLQRLMESKRKVSPNRIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA Q  E ++ Y ++  +   ++ G +    +  A  R       +++   
Sbjct: 77  ALVLTPTRELAAQVGESVRNYGKHLPMRSHVVFGGVSINPQMMATRR----GLDVLVACP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++++ ++ ++++DE  R      ++  +K       ++   P  R  +L 
Sbjct: 133 GRLMDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRK-------ILALMPKQRQNLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    +  +         P    + P N   E IE+L     +  K   +   +      
Sbjct: 186 SATFAEEIRELATGLLNNPAVIEVAPRNSTAERIEQLVHPCDKANKIGLLSHLVTSNDWQ 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   + +  R     +    S A IHG  S   +   +  FK+G  K+L+AT +  
Sbjct: 246 QVLVFTRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGNVKVLVATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+     ++     +     +H++ GR GR       I L      K       + K
Sbjct: 306 RGLDIDKLPQVVNFELPNVAEDYVHRI-GRTGRAGAAGHAISLVAADEGKLIKAIERLTK 364

Query: 613 NTE-----DGFLIAEEDLK--QRKEG 631
                    GF  + E L    R  G
Sbjct: 365 QNIPCEQVAGFEASRETLDNIARGIG 390


>gi|325106943|ref|YP_004268011.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
 gi|324967211|gb|ADY57989.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 399

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 140/330 (42%), Gaps = 23/330 (6%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           L+++ +  P+  Q   I   L+       +  + Q   G+GKT   ++ +   +   +  
Sbjct: 32  LKSVGYEHPSPIQRDFIPPALKG------VDCLGQSQTGTGKTAAFMMPVLELLKEQQEE 85

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   L++Q     +K ++ +++ + ++ G  P   + + +ER       +++G
Sbjct: 86  PQALVLCPTRELSEQVAVEAQKISRFSKLEIAVVVGGRPLKAQMQKIER----GVDVVVG 141

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D  +   L L  +          R+           +L       +TL+L++  
Sbjct: 142 TPGRVIDLFKRKSLSLKNI-RLAVLDEADRMLDIGFRPDMEFILKQCPKERQTLLLSATL 200

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI---EEKKES 498
             ++ ++  +   + P++  I P N   + +E+    + E +K   +   +   + K+  
Sbjct: 201 PSEVERLANRFM-KDPVRIDIEPQNVTADRVEQFYCTVDEHRKLQLLIKLLVQEKPKQAI 259

Query: 499 NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F     + + L+  F +    +  +HG +    ++ VM  F+ G  ++LIAT ++  GI
Sbjct: 260 VFCRTKRKADQLYNKFQTRLDGVETLHGDLPQSKRDRVMKQFRAGKVRMLIATDIVGRGI 319

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           DV   S II  +        +H++ GR GR
Sbjct: 320 DVGGISHIINYDIPEHSDDYVHRI-GRAGR 348


>gi|298706995|emb|CBJ29803.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 402

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 140/371 (37%), Gaps = 39/371 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+ A+K I            I Q   G+GKT V  + +   ++   +  QA++++P
Sbjct: 52  PSAVQQRAVKPITSGRDV------IAQSQSGTGKTAVFSMGILQMLDTTSSDTQALVLSP 105

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  + I        +      G        + L+        ++ GT     D 
Sbjct: 106 TRELAEQTQKVILALGDFMNVQCHACIGGKSIGEDIRRLDY----GVQVVSGTPGRVFDM 161

Query: 390 IQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           I+           L++   DE    G ++++    +            P  + +++++  
Sbjct: 162 IRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLP---------PSTQVVLISATM 212

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKKE--- 497
             ++  +T+K     P+K ++       E I++  V +  E  K   +C   +       
Sbjct: 213 PQEVLDMTKKFMNM-PVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTVTQA 271

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +  V+   +       +++ +HG M   +++++M+ F++G  ++LIAT V   G
Sbjct: 272 VIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRVLIATDVWGRG 331

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S++I  +  +     +H++ GR GR       I        +            
Sbjct: 332 LDVQQVSLVICYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDVRILRDIEQYYSTQ 390

Query: 615 EDGFLIAEEDL 625
            D   +   D+
Sbjct: 391 IDEMPMNITDM 401


>gi|240115845|ref|ZP_04729907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|260440339|ref|ZP_05794155.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI2]
 gi|268601522|ref|ZP_06135689.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291043632|ref|ZP_06569348.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|268585653|gb|EEZ50329.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291012095|gb|EFE04084.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 462

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 128/347 (36%), Gaps = 45/347 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEG------CDIMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++AP   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTSFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET-------IVEATPADRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEK 495
           ++  D  + K+  K        + II + R+D    IE   +   + +    +   I   
Sbjct: 188 SATWDGAVGKLARK----LTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRD 243

Query: 496 KESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +        +++ E           +   +HG M    +   +   + G CK+L+AT
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|156100409|ref|XP_001615932.1| helicase [Plasmodium vivax SaI-1]
 gi|148804806|gb|EDL46205.1| helicase, putative [Plasmodium vivax]
          Length = 528

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 140/369 (37%), Gaps = 45/369 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       L           I + + GSGKTL  ++     + A        G  
Sbjct: 135 TPTPIQIQGWPIALSGKD------MIGKAETGSGKTLAFILPAFVHILAQPSLKYGDGPI 188

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++MAP   LA+Q  +   K++  ++I      G +P++ +  AL++      HI+I   
Sbjct: 189 VLVMAPTRELAEQIRQECIKFSIESKIRNTCAYGGVPKSGQIYALKQ----GVHILIACP 244

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D ++           L+L   D+    G + +++   +            P  +TL
Sbjct: 245 GRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEIQIRKIVEQIR---------PDRQTL 295

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + ++    ++  +      ++PI   +  +       I++   ++ E +K   +   ++ 
Sbjct: 296 MWSATWPKEVQSLARDLCKQQPIHVNVGSLTLTACRRIKQEIYLIEEHEKIANLKLLLQR 355

Query: 495 KKESNFRSVVERFNSLHEHFTSSIA--------IIHGRMSDIDKESVMDSFKNGTCKLLI 546
               N R +V      +  F +            IHG     ++  V++ FK G   +LI
Sbjct: 356 IFRDNDRIIVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLNDFKTGKSPILI 415

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ D   +I  +  +     +H++ GR GR     +          + +  
Sbjct: 416 ATDVASRGLDIKDVKYVINFDFPNQIEDYVHRI-GRTGRAGAHGASFTFLTSDKYRLARD 474

Query: 607 RLSVLKNTE 615
            + +L+ +E
Sbjct: 475 LVKILRESE 483


>gi|59713736|ref|YP_206511.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481984|gb|AAW87623.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 460

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 135/374 (36%), Gaps = 27/374 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------EAGGQA 324
           +PT+ Q  A+   +           +     GSGKTL  ++ M           +   +A
Sbjct: 38  TPTEIQRKAVPVAIAGKDV------LASSKTGSGKTLAFVLPMLHKSLKTKSFSKNDPRA 91

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI+AP   LA+Q Y  ++           +ITG      +  AL +        I+ T  
Sbjct: 92  VILAPTRELAKQVYSHLRAMLGGLTYDATLITGGENFNDQVNALRK----HPKFIVATPG 147

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D +++  L L  ++        + L L        +    +    +TL+ ++  D D
Sbjct: 148 RLADHLEHQSLYLDGLETLILDEADRMLDLGFAEHLQKIHKAASHRRRQTLMFSATLDHD 207

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---- 500
                       P +  +   N   + I +   +         I  +I E ++       
Sbjct: 208 AVNKFAGNMLDNPKRISVGLSNDEHKDITQRFYLCDHLDHKQAILNKIIETEDYFQIMIF 267

Query: 501 ---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              RS  +R   L          + G M+   + ++M  F+    K+L+ T V   G+D+
Sbjct: 268 TATRSDTDRLTKLLNEENLKAVALSGDMNQTARNNIMSQFERRVHKILVTTDVASRGLDL 327

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              + +I  +        +H++ GR GR  +  + I L  P     S+ R+      +  
Sbjct: 328 TSVTHVINFDMPKHMEEYVHRV-GRTGRAGKKGTAISLVGPK-DWESFKRVETFLQQDLS 385

Query: 618 FLIAEEDLKQRKEG 631
           F + EE LK + +G
Sbjct: 386 FSVFEE-LKGKFKG 398


>gi|28897062|ref|NP_796667.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837936|ref|ZP_01990603.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ3810]
 gi|260363937|ref|ZP_05776676.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus K5030]
 gi|260877980|ref|ZP_05890335.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AN-5034]
 gi|260896348|ref|ZP_05904844.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus
           Peru-466]
 gi|260900676|ref|ZP_05909071.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ4037]
 gi|28805270|dbj|BAC58551.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748714|gb|EDM59565.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ3810]
 gi|308085198|gb|EFO34893.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus
           Peru-466]
 gi|308090073|gb|EFO39768.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AN-5034]
 gi|308110247|gb|EFO47787.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ4037]
 gi|308112560|gb|EFO50100.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus K5030]
 gi|328471865|gb|EGF42742.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus 10329]
          Length = 459

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 87/469 (18%), Positives = 169/469 (36%), Gaps = 79/469 (16%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ ++  T  Q  ++  IL      N+   I QG  GSGKT    + + + +      
Sbjct: 19  LDSLNYTHMTPIQALSLPAIL------NQRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 73  VQALVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 128

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++  +        L+L   D     G Q  L           ++  A    
Sbjct: 129 GTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDAL---------DAIINAAPKQR 179

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I KI ++   + P    +   +    + +    V     +   +   +
Sbjct: 180 QTLLFSATFPEKIEKIAQR-IMKSPEMIKVESTHDTSSIAQYFYKVEGTEARDEALANLL 238

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              +        N +  V+       H   S+  IHG +   +++  +  F N +  +L+
Sbjct: 239 LTYQPESAVVFCNTKKEVQNVADELHHRGFSVIDIHGDLEQRERDQALVQFANKSVSILV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--------- 597
           AT V   G+DV +   +            +H++ GR GR          +          
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRI-GRTGRAGSKGLAFSFFGEKDGLRVAR 357

Query: 598 --------------PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG--IKQSGM 641
                         P  S     +  ++    DG        ++ + G+ILG    ++G+
Sbjct: 358 IEEYLEMDVVPATLPAKSNQQPYQAKMVTINIDGGKK-----QKVRPGDILGCLTGKNGI 412

Query: 642 PKFLIAQPEL-----HDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           P   + +  L     + ++ + A K A  I++       ++G+  R  L
Sbjct: 413 PGAQVGKIHLFPVRSYVAVEKSAAKKALQIIST----GKMKGRQFRARL 457


>gi|328544967|ref|YP_004305076.1| ATP-dependent RNA helicase protein [polymorphum gilvum SL003B-26A1]
 gi|326414709|gb|ADZ71772.1| ATP-dependent RNA helicase protein [Polymorphum gilvum SL003B-26A1]
          Length = 503

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 61/349 (17%), Positives = 127/349 (36%), Gaps = 28/349 (8%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           +  + +  PT  Q  AI  IL      + ++ + Q   G+GKT    + +A  + A    
Sbjct: 35  IAALGYEAPTPIQTDAIPHILAG----HDLMGLAQ--TGTGKTAAFGLPLANRMLASADT 88

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+I+AP   L  Q  + +  + + + + V ++ G +    + K L R      
Sbjct: 89  AAPRTTRALILAPTRELVTQIAQNLVAFVKGSPLQVAVVMGGVSIGGQIKRLAR----GT 144

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I++ T     D +    L L  V         Q L L        +         +TL+
Sbjct: 145 DILVATPGRLLDLVDRNALRLDEVGYLVLDEADQMLDLGFIHALRKI-AALVPKKRQTLL 203

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     I  +  +   + P++  + P  R  + +++    +++  K   +   + E+ 
Sbjct: 204 FSATMPKQIEDLA-RAYLKDPVRVEVAPAGRTADKVDQCVHFVAQADKTDLLISCLSERA 262

Query: 497 ES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +   ++              IHG  S   ++  +   K G  ++L+AT V
Sbjct: 263 QDLSLVFARTKHGADKVVRKLVAAGLKANAIHGNKSQNQRDRAIKELKTGETRILVATDV 322

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              GID+   S +   +      + +H++ GR  R       +    P 
Sbjct: 323 AARGIDIPGVSHVYNFDLPDVPESYVHRI-GRTARAGADGDAVAFCAPE 370


>gi|300705099|ref|YP_003746702.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum
           CFBP2957]
 gi|299072763|emb|CBJ44116.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum
           CFBP2957]
          Length = 547

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 127/366 (34%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q  AI  IL+          +     G+GKT    + +   + A           
Sbjct: 23  EPTPIQRQAIPAILKG------GDLLAGAQTGTGKTAGFTLPLLHRLSAAQPNKVHTPHG 76

Query: 323 -----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                +A+++ P   LA Q  E ++ Y +   +   ++ G +    +  AL+R       
Sbjct: 77  MRYPVRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKR----GVD 132

Query: 378 IIIGTHALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I++ T     D +         + L+++DE  R      +   +K      +L    P  
Sbjct: 133 IVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRK------ILNILPPKR 186

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           + L+ ++    DI  + ++    +P    +   N   E +E+    +   +K   +   +
Sbjct: 187 QNLLFSATFSDDIRALADRLLD-QPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLV 245

Query: 493 EEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +            +    R          S   IHG  S   +   +  FK GT ++L+
Sbjct: 246 RDNDWHQVLVFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFKAGTLRVLV 305

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT +   GID+     ++  +  +     +H++ GR GR       I L           
Sbjct: 306 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGAQGEAISLVCVDEHGLLRD 364

Query: 607 RLSVLK 612
              ++K
Sbjct: 365 IERLIK 370


>gi|118443840|ref|YP_877556.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118134296|gb|ABK61340.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 476

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/403 (20%), Positives = 152/403 (37%), Gaps = 50/403 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           ++ + +  PT+ QE  I  +LQ          I++   GSGKT    I +   V+     
Sbjct: 16  IKMLGYKNPTEVQEKTIPLVLQGKD------IIVKSQTGSGKTASFGIPLCEKVKLENKK 69

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E I    +  ++    + G  P + ++  L++    + HI++G
Sbjct: 70  PQALILTPTRELAVQIKEDISNIGRFKKVKCTAVYGKEPISIQKNQLKQ----RVHIVVG 125

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPI 431
           T     D IQ   L L  +        D+    G   Q    + +       +L +AT  
Sbjct: 126 TPGRTFDHIQKGNLDLSDIKYLIIDEADKMLNMGFINQVEDIIKEITNDRITMLFSATLE 185

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEGKKAY 486
            R   L    +   +  +I++K      I+     +N   R + + + +   + +   A 
Sbjct: 186 ERIEKLCKRYMNHPEKIEISKKNVTTDIIEQEYYKVNHSKRFNTLTKVIYAEVPDS--AI 243

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C    E      +   + FN+           +HG M   D+   ++ FK G  + L+
Sbjct: 244 IFCNTKVEVGNVANKMKNQGFNA---------KALHGGMDQKDRLYTINDFKRGKFQFLV 294

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   GIDV + + +I         + +H++ GR GR       I        +    
Sbjct: 295 ATDVAARGIDVEEITHVINYEVPVEKESYVHRI-GRTGRAGHKGKSITFVSDYEKRMFNE 353

Query: 607 RLSVLKNTEDGFLIAEEDL----KQRKEGEILGIKQSGMPKFL 645
               +     G+ + E+++    +  K  ++   K    PKF 
Sbjct: 354 IEEYI-----GYSVPEKEMPQEEEIEKGKKLFEEKARQRPKFK 391


>gi|83648397|ref|YP_436832.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83636440|gb|ABC32407.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 593

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 133/358 (37%), Gaps = 35/358 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  QE +I  +LQ  S       +     G+GKT    + +   ++      Q +++A
Sbjct: 34  QPSPIQEQSIPLLLQGES------ILGVAQTGTGKTAAFALPLLERLDPKIQSPQIIVLA 87

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  K Y++      V  I G      + ++L+R       +I+GT     
Sbjct: 88  PTRELAIQVAEAFKSYSRYLPDFTVLPIYGGQDMRGQLRSLKR----GVQVIVGTPGRVL 143

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQR--LKLTQKATAPHVLLMTATPIP--RTL 435
           D +Q   L L  +        DE  R G        L+         L +AT  P  + +
Sbjct: 144 DHLQRKSLDLSQIRAVVLDEADEMLRMGFIDDVEEILSNAPGECQYALFSATMPPAIKRV 203

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L      +I  K +  + I   ++ ++   ++    +V+  E  +   I  + +  
Sbjct: 204 AEKYLKGAKEVRIAAKTSTVERISQHVLMVDNSHKLDALTRVLEVENFEGMIIFVRTKS- 262

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                 +  E    L     ++   ++G  +   +E  +D  K G   +++AT V   G+
Sbjct: 263 ------ATTELAEKLQARGYAA-EALNGDQTQKIREQTIDRLKKGRLDIVVATDVAARGL 315

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           DV    +++  +  +   A +H++ GR GR       IL   P   +      S  K 
Sbjct: 316 DVERIGLVLNYDIPYDTEAYVHRI-GRTGRAGREGKAILFAAPKERRLLRAIESATKQ 372


>gi|322436878|ref|YP_004219090.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321164605|gb|ADW70310.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 532

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 135/357 (37%), Gaps = 29/357 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI   L+          +     G+GKTL  LI M   +EA           
Sbjct: 84  TPTPVQAKAIPPALEGRD------ILATASTGTGKTLSFLIPMIERMEANSEPSTRGKKG 137

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +++I+ P   LA Q  E   K    ++    ++ G + +  +   L R       +++
Sbjct: 138 PIRSLILLPTRELAMQVLEAYAKINPQSKSDSVLVCGGLSENTQLDQLSR----GPRLVV 193

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T    +D ++   + L  V E        R+       A   ++       +T+  ++ 
Sbjct: 194 ATPGRLEDFLRRRSVNLNFV-EMLVLDEVDRMLDMGFLPAIRRIVGALPKTRQTMCYSAT 252

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
            D +I++I      +KP++  I   ++  + +E     + + +K   +   + E + +  
Sbjct: 253 LDANITEIVRDYV-QKPVRIEIGTTSKPSDQVELKVFTVMQDQKLGLLNQMLNEHEGTFL 311

Query: 499 ---NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   +R +   E       +IHG  S   + S +  F  G  ++L+AT V   GI
Sbjct: 312 VFSRTKHGADRISKKLEKLGHVADVIHGDRSQSQRTSALKGFSTGRHRILVATDVAARGI 371

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           DV D + ++  +        +H++ GR GR  +         P    ++      LK
Sbjct: 372 DVRDIAHVVNYDLPGTTEDFVHRI-GRTGRAGKKGVATTFVMPQERSDARKMERELK 427


>gi|296159198|ref|ZP_06842024.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295890457|gb|EFG70249.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 481

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/376 (17%), Positives = 133/376 (35%), Gaps = 43/376 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L           +     G+GKT    + +   +   G        +
Sbjct: 23  TPTPVQAKAIPAVLSGKDV------MAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +    Y +   +      G +    +   L +       +++ T 
Sbjct: 77  VLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSINPQMMKLRK----GVDVLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++Q+ ++  +++DE  R        L          +  A P+ R  +L 
Sbjct: 133 GRLLDLNRQNAVQFDQVQTLVLDEADRM-------LDLGFARELNAVFAALPVQRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +       R P+   + P N     I +  V + +  K       + E    
Sbjct: 186 SATFTDDIRAMAAGILRDPLNISVSPPNATASKIRQWVVTVDKKNKPDLFMHLVAENNWR 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +       R+ V+   ++ +    ++  IHG      +   ++ FK G  ++L+ T V  
Sbjct: 246 HALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVVTDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ D  ++I  +        +H++ GR GR       + L     +       ++++
Sbjct: 306 RGLDIDDLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALIR 364

Query: 613 NT-----EDGFLIAEE 623
            T     E GF  AE 
Sbjct: 365 QTLRREEEPGFE-AEH 379


>gi|84499824|ref|ZP_00998112.1| DEAD/DEAH box helicase [Oceanicola batsensis HTCC2597]
 gi|84392968|gb|EAQ05179.1| DEAD/DEAH box helicase [Oceanicola batsensis HTCC2597]
          Length = 451

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 126/356 (35%), Gaps = 33/356 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG------QA 324
           PT  Q  AI   ++          +     G+GKT    + +  A+  E G       + 
Sbjct: 24  PTPIQTKAIPHAMEGRD------ILGLAQTGTGKTAAFGLPLLTAIAREQGKPEPKTVRG 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA+Q  E ++ Y + T + V ++ G      +   L R       +++ T  
Sbjct: 78  LVLAPTRELAKQIVENLQAYAKGTHMRVGLVVGGASINAQVNRLAR----GTDVLVATPG 133

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT---PIPRTLVLTSLG 441
              D +    + L       RF V             H L   AT      +T++ ++  
Sbjct: 134 RLIDLLDRRAVTLSQT----RFLVLDEADQMLDLGFIHALRRIATLLPQTRQTMLFSATM 189

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--- 498
              +++I        P++    P  +  + IE+    +++G+K   +   ++  +     
Sbjct: 190 PKLMAEIAGSYLT-DPVRVETAPPGKPADKIEQSVHFIAQGEKTALLIEHLDAHRADPAI 248

Query: 499 ---NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   ER          +   +HG  S   ++  +  F+ G   +L+AT V   GI
Sbjct: 249 VFARTKHGSERLMKNLLAAGYAAVAVHGNKSQGQRDRAIREFREGEAMVLVATDVAARGI 308

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           D+     +   +  +     +H++ GR  R     + I    P           +L
Sbjct: 309 DIPGIRYVYNYDLPNVADNYVHRI-GRTARAGRDGTAIAYCAPAEMGELRDIQKLL 363


>gi|328717963|ref|XP_001951743.2| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 556

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 136/368 (36%), Gaps = 43/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q       L      N ++ I     GSGKTL  ++     +          G  
Sbjct: 123 EPTAIQAQGWPIAL----SGNNLVGI--ASTGSGKTLSYIVPALIHISHQRKLSRGDGPI 176

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++++P   LAQQ       +     +    + G  P+  +   L R       ++I T 
Sbjct: 177 VLVLSPTRELAQQIQTVCDDFGDAFGVSSTCLFGGAPKGGQASDLSR----GVELVIATP 232

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++  +        L+L   D     G   Q R  + Q      VL+ +AT    
Sbjct: 233 GRLLDFLESERTNMCRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQVLMWSATWPKE 292

Query: 433 -RTLVLTSLGDIDISKITEKP----AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            + L    L +     I           + I  V    ++  ++I  LK ++ E +    
Sbjct: 293 VKNLAEEFLDEYIQINIGSLTLAANHNIQQIVEVCQEYDKETKLISLLKKIMDEDENKTI 352

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +   IE K     R V E    +  H  S++ I HG  S  ++++V+  F++    +L+A
Sbjct: 353 VF--IETK-----RRVDEITRKIKRHGYSAVCI-HGDKSQYERDNVLKDFRDSRYPILVA 404

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +  +     +H++ GR GR  +  +    +    +K +   
Sbjct: 405 TDVAARGLDVEDVKFVINFDYPNNSEDYVHRI-GRTGRSHKTGTAYTFFTQSNAKQAADL 463

Query: 608 LSVLKNTE 615
           +SVL    
Sbjct: 464 VSVLTEAN 471


>gi|206562042|ref|YP_002232805.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia J2315]
 gi|198038082|emb|CAR54030.1| ATP-independent RNA helicase [Burkholderia cenocepacia J2315]
          Length = 465

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/459 (17%), Positives = 167/459 (36%), Gaps = 50/459 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 22  LAQLGYVDMTPIQAASLPIALAGQD------LIAQAKTGSGKTAAFSLALLARLDARRFD 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+ P   LA Q  + +++  +    + V  + G  P   + ++LE      AHI++
Sbjct: 76  VQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH----GAHIVV 131

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT     D +    L L  ++        + L +        V  M  T   +TL+ ++ 
Sbjct: 132 GTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTT-RQTLLFSAT 190

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+K++++           +     D  I +    ++E ++ + +   +   +    
Sbjct: 191 YPDGIAKLSQQFLRNPKEIK--LAERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRPVST 248

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +        +          +HG +   +++ V+  F N +C +L+AT V   G
Sbjct: 249 IAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARG 308

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+     +I  +        +H++ GR GR ++    + L                K  
Sbjct: 309 LDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQDGWALSLASMDEMGRVGAIEQAQKRE 367

Query: 615 EDGFLIA-------------EEDLKQRK-------EGEILG--IKQSGMPKFLIAQP--E 650
            +   +A              E L+           G++LG     +G     I +    
Sbjct: 368 VEWHPLAELKPADDSVLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVT 427

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
              + + I R  A+  L +  +   ++G+ +++ L   +
Sbjct: 428 EFSTYVAIERGVARDALRKL-NAGKIKGKRVKVRLMDEE 465


>gi|167584411|ref|ZP_02376799.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia ubonensis
           Bu]
          Length = 481

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/384 (16%), Positives = 135/384 (35%), Gaps = 45/384 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L           +     G+GKT    + +   +   G        +
Sbjct: 23  TPTPVQVKAIPAVLSGKDV------MAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +    Y +   + +    G +    +   L +       +++ T 
Sbjct: 77  VLVLVPTRELAEQVLQSFIDYGKGLDLRLLAAYGGVSINPQMMKLRK----GVDVLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGV-----QQRLKLTQKATAPHVLLMTATPIPR 433
               D     ++Q+ ++  +++DE  R        +              LL +AT    
Sbjct: 133 GRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAQRQTLLFSATFSDD 192

Query: 434 TLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              + +       KI+  P       IK  ++P+++ ++    + +V     K   +   
Sbjct: 193 IRAMAAGILRGPVKISVSPPNATAGKIKQWVVPVDKRNKPDLFMHLVAENDWKHALVFV- 251

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    R  V+   ++ +    ++  IHG      +   ++ FK G   +L+AT V 
Sbjct: 252 -------KTRKGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVHMLVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+    ++I  +        +H++ GR GR       + L     +       +++
Sbjct: 305 ARGLDINGLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALI 363

Query: 612 KNT-----EDGFLIAEEDLKQRKE 630
           + T     E GF  AE  + Q   
Sbjct: 364 RQTLPREEEPGFE-AEHRVPQTGA 386


>gi|56418761|ref|YP_146079.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
 gi|81675946|sp|Q5L3G9|CSHA_GEOKA RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|56378603|dbj|BAD74511.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
          Length = 467

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/358 (21%), Positives = 134/358 (37%), Gaps = 39/358 (10%)

Query: 259 GKIAQKILRNIPFSPT-KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   K +  + F  T   Q   I   LQ+         I Q   G+GKT    I +   
Sbjct: 10  SQEVMKAIERMGFEETTPIQAKTIPLSLQNKDV------IGQAQTGTGKTAAFGIPIVEK 63

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           V    +  QA+++AP   LA Q  E + K     ++ V  I G      + +AL++    
Sbjct: 64  VNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKK---- 119

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLM 426
             H+I+GT     D I    L L  V        DE    G  + +           +L 
Sbjct: 120 HPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDI---------EAILS 170

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +TL+ ++     I +I E+    +P    +         I++  + + E KK  
Sbjct: 171 HVPAERQTLLFSATMPDPIRRIAERFMN-EPELVKVKAKEMTVPNIQQYYLEVHEKKKFD 229

Query: 487 WICPQIEEKK---ESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNG 540
            +   ++ +       F     R + L E       +   IHG +S   + SV+  FK G
Sbjct: 230 ILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEG 289

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++L+AT V   G+D+   + +   +      + +H++ GR GR  +    +    P
Sbjct: 290 AIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKTGVAMTFVTP 346


>gi|71030100|ref|XP_764692.1| RNA helicase-1 [Theileria parva strain Muguga]
 gi|68351648|gb|EAN32409.1| RNA helicase-1, putative [Theileria parva]
          Length = 400

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 138/358 (38%), Gaps = 42/358 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           P+  Q+  IK I+++         I Q   G+GKT    IA    +       Q +I+AP
Sbjct: 51  PSAIQQRGIKPIIENYDT------IGQAQSGTGKTATFSIAALQIINYDVMSCQILILAP 104

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ  + +       ++      G          L+       H+++GT     D 
Sbjct: 105 TRELAQQIQKVVLALGDYLKVQCHACVGGTVVRDDVHKLKA----GVHMVVGTPGRVYDM 160

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           I+   L        IL   DE    G + +++   K   P +         +  + ++  
Sbjct: 161 IEKKALLTDKMKLFILDEADEMLSRGFKGQIQDVFKRLPPDI---------QVALFSATM 211

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE------K 495
             +I ++T K   R P + ++       E I++  +++ +  K   +C   E        
Sbjct: 212 PNEILELTTKFM-RSPKRILVKKDELTLEGIKQFYILIDKEYKFETLCDLYESVTITQAI 270

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N R  V+      +    +++ +HG M   +++ +M  F++G+ ++LI T ++  GI
Sbjct: 271 IYCNTRRKVDYLTLKMQEKDFTVSSMHGDMGQKERDLIMREFRSGSTRVLITTDLLARGI 330

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           DV   S++I  +        +H++ GR GR       I       +      +  ++N
Sbjct: 331 DVQQVSLVINYDLPMSPDNYIHRI-GRSGRFGRKGVAINFV----THQDMDTMKSIEN 383


>gi|39940710|ref|XP_359892.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15]
 gi|152032454|sp|A4QU31|FAL1_MAGO7 RecName: Full=ATP-dependent RNA helicase FAL1
 gi|145010887|gb|EDJ95543.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15]
          Length = 401

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  + +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 49  SPSAVQSRAIVQVCKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 102

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+       HI+ GT     D
Sbjct: 103 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HIVSGTPGRVAD 158

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 159 MIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLP---------PATQVVVVSAT 209

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 210 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAIEKEDWKFDTLCDLYDTLTITQ 268

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 269 AVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWAR 328

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 329 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTSE 373


>gi|258571293|ref|XP_002544450.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704]
 gi|237904720|gb|EEP79121.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704]
          Length = 399

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/338 (19%), Positives = 123/338 (36%), Gaps = 23/338 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAIQSRAIVQICKGRDT------IAQAQSGTGKTATFAISILQVIDTALRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + L+       H++ GT     D
Sbjct: 101 PTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLDHGQ----HVVSGTPGRVAD 156

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            I+   L    + +         L         + +     P  + +VL++    D+  +
Sbjct: 157 MIRRRHLRTRHI-KMLVLDEADDLLARGFRDQIYDVYRYLPPATQVVVLSATLPYDVLSM 215

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK------ESNFR 501
           T K     P++ ++       E +++  + +  E  K   +C   +           N R
Sbjct: 216 TTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
             V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   GIDV   S
Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           ++I  +        +H++ GR GR       I      
Sbjct: 335 LVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTSE 371


>gi|159043882|ref|YP_001532676.1| DEAD/DEAH box helicase domain-containing protein [Dinoroseobacter
           shibae DFL 12]
 gi|157911642|gb|ABV93075.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL
           12]
          Length = 493

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 146/387 (37%), Gaps = 48/387 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N++ K+ + I      +PT  Q  AI   L+          +     G+GKT    + M
Sbjct: 7   LNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRDV------LGIAQTGTGKTASFTLPM 60

Query: 315 AAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
              +  G       +++++AP   LA Q  E    Y ++T++   ++ G +    +   +
Sbjct: 61  ITMLRKGRARARMPRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDLLI 120

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
           ++       ++I T     D  +  KLIL     ++VDE  R      +   +K      
Sbjct: 121 DK----GVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEK------ 170

Query: 424 LLMTATPI-PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER-------- 474
            +   TP   +TL  ++    +I +IT       P +  +   +   E I +        
Sbjct: 171 -IFQLTPFTRQTLFFSATMAPEIERITNTFL-SNPARVEVARQSTTSETITQGLVQFKPS 228

Query: 475 -LKVVLSEGKKAYWICPQIEEKKE--------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
                 +  +K   +   IE + +         N +  V+             A IHG +
Sbjct: 229 RRDRATAFKEKREMLRALIEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAAPIHGDL 288

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
               +   +D F++GT K L+A+ V   G+D+ + S +   +        +H++ GR GR
Sbjct: 289 EQSQRTKTLDQFRDGTLKFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRI-GRTGR 347

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLK 612
                + ++L  P   K       ++K
Sbjct: 348 AGRKGTTLMLAVPADDKLLAAIEDLVK 374


>gi|288556690|ref|YP_003428625.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288547850|gb|ADC51733.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 487

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 78/357 (21%), Positives = 130/357 (36%), Gaps = 35/357 (9%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  QK L  + +   T  QE  +   +           I++   GSGKT    I +   
Sbjct: 18  SKEVQKALDLLNYKKLTNVQEKVVPVAIA------EKDVIVKAQTGSGKTAAYAIPLCEK 71

Query: 318 V---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           V   E   QA+++ P   LA Q  E I    +  ++    + G      ++  L++    
Sbjct: 72  VIWEENKPQALVLTPTRELAAQVKEEIINIGRFKRVKAAAVYGKQSYERQKIELKQKN-- 129

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGV-QQRLKLTQKATAPHVLL 425
             HI+ GT     D I+   L    +        D+    G   Q   +  +  A  V +
Sbjct: 130 --HIVTGTPGRVLDHIEKNSLDTTNIRFLVIDEADQMLNMGFIDQVEAIIARIPANRVTM 187

Query: 426 MTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           + +   P     L    +   +  +I    A R  I   II +   ++     KV+++E 
Sbjct: 188 LFSATFPYGVEELSKRHMSLPEYIEINSTEASRPNINHAIIEVEADEKTDVLKKVLITEN 247

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             +  I            +  V++           +  +HG M   D+  VMD FK G  
Sbjct: 248 PDSCIIF--------CQTQVEVDKLEKSLLRSQYPVEKLHGGMKQEDRFDVMDRFKEGAF 299

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           + L+AT V   GIDV D  ++I  +        +H++ GR GR  +      L  P 
Sbjct: 300 RYLVATGVAGRGIDVADIDLVINYDVPAEKENYVHRI-GRTGRAGKKGKARTLVTPS 355


>gi|329119861|ref|ZP_08248535.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464017|gb|EGF10328.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 444

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 128/347 (36%), Gaps = 45/347 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
           +PT  Q  A+   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  TPTPIQAQAVPFALEGRD------IMASAQTGSGKTAAFLLPTLQRLTRRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALTYAKNMKWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      ++  +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMDSGKVDFARLEVLILDEADRMLDMGFIEDIET-------IVAATPEDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDE--VIERLKVVLSEGKKAYWICPQIEEK 495
           ++  D  + K+  K          ++ I R+DE   IE   +   + +    +   I   
Sbjct: 188 SATWDGAVGKLARKLTKNP----EVVEIERVDEQGKIEEQLLYCDDMRHKNRLLDHILRD 243

Query: 496 KESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +        +++ E           +   +HG M    +   +   + G CK+L+AT
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   GIDV   + +I  +        +H++ GR GR       +  
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRSGIAVTF 349


>gi|325964224|ref|YP_004242130.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470311|gb|ADX73996.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 710

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/384 (18%), Positives = 137/384 (35%), Gaps = 47/384 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + ++G++   +       P+  Q + I  +L+          +     G+GKT    +  
Sbjct: 72  LGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDV------VGLAQTGTGKTAAFAVPA 125

Query: 315 AAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHR 364
            + +             QA+++AP   LA Q  E    Y ++     V  + G      +
Sbjct: 126 LSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQ 185

Query: 365 RKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRL--KL 414
              L R     A +++GT     D I        +   L+L   DE  R G  + +    
Sbjct: 186 LAGLRR----GAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIF 241

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-----IIPINRID 469
            Q  +   V L +AT   +   ++     + ++I+ K        T      ++  +++D
Sbjct: 242 QQTPSDRQVALFSATMPSQIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVMGPHKLD 301

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            +   L+V   +G  A+              +   E      +      A I+G +    
Sbjct: 302 AMTRILEVEEFDGVIAFV-----------RTKMATEDLADKLKSRGFQAAAINGDIPQQQ 350

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E  +D+ K G   +L+AT V   G+DV   S +I  +  H   + +H++ GR GR    
Sbjct: 351 RERTVDALKEGRIDILVATDVAARGLDVERISHVINYDIPHDTESYVHRI-GRTGRAGRS 409

Query: 590 SSCILLYHPPLSKNSYTRLSVLKN 613
              IL   P       +     + 
Sbjct: 410 GDAILFMTPREKYLLRSIEKATRQ 433


>gi|316979290|gb|EFV62098.1| ATP-dependent RNA helicase Dbp2 [Trichinella spiralis]
          Length = 540

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 134/364 (36%), Gaps = 39/364 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            P+  Q ++    L        M+ I Q   GSGKTL  L+     ++         G  
Sbjct: 119 KPSVIQATSWPIAL----SGRDMVGIAQ--TGSGKTLSFLLPSIVHIKHQPRVERGEGPI 172

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ  E   +Y     +    + G   +  +++ LER       + I T 
Sbjct: 173 VLVLAPTRELAQQVQEVAIEYGSRNGVRSVCVYGGASKGPQQRELER----GVEVCIATP 228

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP- 432
               D ++           L+L   D     G + +++    Q       ++ +AT    
Sbjct: 229 GRLLDFLRMGVTNLRRCTFLVLDEADRMLDMGFEPQIRQIVDQTRPDRQTIMFSATWPTE 288

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY--WIC 489
            R L  + L D     I             ++ I    E  ERL  +L E  K     + 
Sbjct: 289 VRALAESFLRDYVFVNIGSLQLAANHNIEQVVEIVSEFEKHERLLKLLQEVTKDSDPKVL 348

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +E K+++      +            +  IHG  +  +++ V++ F+ G   ++IAT 
Sbjct: 349 IFVETKRKA------DELTRWLRQKGWPVLSIHGDKAQGERDWVLNEFRTGKSPIVIATD 402

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV D   ++  +        +H++ GR GR     +    ++   ++ +   + 
Sbjct: 403 VAARGLDVDDIKFVVNYDYPQCSEDYVHRI-GRTGRCNRTGTAYTFFNANNARYAKDLID 461

Query: 610 VLKN 613
           VL  
Sbjct: 462 VLIE 465


>gi|260459532|ref|ZP_05807787.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259035086|gb|EEW36342.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 477

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 138/361 (38%), Gaps = 39/361 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            P   Q  AI   L+       +  I Q   GSGKT    + + + +            +
Sbjct: 42  EPKPIQMQAIPPQLEG----RDIFGIAQ--TGSGKTAAFALPILSKIIALGTKRRAKTTR 95

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  + IK   +   +   ++ G + +  + K +         I+I T 
Sbjct: 96  ALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVAP----GVDILIATP 151

Query: 384 ALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLMTAT-PIPRTLVL 437
               D ++   LIL       +DE  R      +   ++       +  AT P  +T + 
Sbjct: 152 GRLTDLVREGDLILSDTKWLVLDEGDRMLDMGFINDVKR-------IAKATAPDRQTALF 204

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I+++  K   + P++  + P +     I +  V     +K   +   + +   
Sbjct: 205 SATMPDEIAELA-KGLLKNPVRIEVSPQSTAAAEIVQGVVFARTKQKRQVLSTMLADAAM 263

Query: 498 S------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   +R     E      A+IHG  S   ++  ++ F++G+ ++L+AT + 
Sbjct: 264 KSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFRDGSVRILVATDIA 323

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV   S ++  +      + +H++ GR GR       I L  P  +        ++
Sbjct: 324 ARGIDVPGISHVVNFDLPDEAESYVHRI-GRTGRNGMDGIAITLCDPSENSKLRQVERII 382

Query: 612 K 612
           +
Sbjct: 383 R 383


>gi|294886917|ref|XP_002771918.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239875718|gb|EER03734.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 521

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/365 (19%), Positives = 130/365 (35%), Gaps = 38/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       +        M+ I   + GSGKTL  L+     + A        G  
Sbjct: 138 APTPIQIQGWPVAM----SGRDMVGI--AETGSGKTLAFLLPAIVHINAQPYLQRGDGPI 191

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++MAP   LA Q  E   K+ ++++I      G +P+  + + L         I I T 
Sbjct: 192 VLVMAPTRELAVQIQEECNKFGKSSKIKNTCCYGGVPRGPQARDLSE----GVEICIATP 247

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D ++  +        L+L   D     G + +++    Q       LL +AT    
Sbjct: 248 GRLIDFLESQRTNLRRVTYLVLDEADRMLDMGFEPQIRKITSQIRPDRQTLLWSATWPKE 307

Query: 434 TLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
              L      +      +           T  + + +  E  +RLK +L        +  
Sbjct: 308 VQGLARDLCREEPVHINVGTLTLKACHNVTQYVDVVQEYEKRDRLKQLLERVMDGSKLLI 367

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             + K     R   +   +L      ++ I HG     +++ V+  FK+G   ++IAT V
Sbjct: 368 FTDTK-----RGADDLTRTLRMDGWPALCI-HGDKKQEERDWVLHEFKSGKSPIMIATDV 421

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D   ++  +        +H++ GR GR     +    +     K +   + +
Sbjct: 422 ASRGLDVKDIRHVVNYDFPGQIEDYVHRI-GRTGRAGCKGNAYTFFTADKIKMARGLVQI 480

Query: 611 LKNTE 615
           L+   
Sbjct: 481 LREAN 485


>gi|115437508|ref|XP_001217828.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624]
 gi|121734188|sp|Q0CAS8|FAL1_ASPTN RecName: Full=ATP-dependent RNA helicase fal1
 gi|114188643|gb|EAU30343.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624]
          Length = 399

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFAISILQVIDTVVRESQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + L+       H++ GT     D
Sbjct: 101 PTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQ----HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 157 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E I++  + +  E  K   +C   +      
Sbjct: 208 LPYDVLDMTTKFMT-DPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQ 266

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 267 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 326

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 327 GIDVQQVSLVINYDLPTNRENYIHRI-GRSGRFGRKGVAINFVTSD 371


>gi|147779855|emb|CAN61608.1| hypothetical protein VITISV_040122 [Vitis vinifera]
          Length = 413

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 128/343 (37%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I   ++ +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 62  KPSAIQQRGIVPFIKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----SSGVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L +T
Sbjct: 172 MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ +  +E L          Y      +   
Sbjct: 232 RKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTKD 386


>gi|121707307|ref|XP_001271794.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|143359800|sp|A1CHL3|PRP28_ASPCL RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|119399942|gb|EAW10368.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 798

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 140/382 (36%), Gaps = 50/382 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q +AI   LQ          I     GSGKT   L+ +   +             
Sbjct: 388 EPTPIQRAAIPIALQSRD------LIGVAVTGSGKTASFLLPLLVYIAELPRIDEFEWRK 441

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G  A+++AP   LAQQ     KK+TQ     V  I G      +  +L       A I
Sbjct: 442 NDGPYAIVLAPTRELAQQIEIEAKKFTQPLGFNVVSIVGGHSLEEQAYSLRN----GAEI 497

Query: 379 IIGTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLTQKA-----------T 419
           II T     D I+   L+L           D     G ++ +     A            
Sbjct: 498 IIATPGRLVDCIERRILVLSQCCYIIMDEADRMIDLGFEEPVNKILDALPVTNEKPDSDE 557

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A +   M +    +T++ T+     + +I  K   R  I T+      +D V +R++++ 
Sbjct: 558 AENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVELIA 617

Query: 480 SEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
            E K+   +   +   +         N +   +      +H   S   +HG  +   +E+
Sbjct: 618 GEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKHMGFSSVTLHGSKTQDQREA 677

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            + S +NG+  +L+AT +   GIDV D S+++  N      +  H++ GR GR  +    
Sbjct: 678 ALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRI-GRTGRAGKSGVA 736

Query: 593 ILLYHPPLSKNSYTRLSVLKNT 614
           I       +   Y    +L  +
Sbjct: 737 ITFLGNEDADVMYDLKQMLMKS 758


>gi|84686458|ref|ZP_01014352.1| ATP-dependent RNA helicase RhlE [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665641|gb|EAQ12117.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2654]
          Length = 474

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 131/370 (35%), Gaps = 48/370 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  Q  AI   L+          +     G+GKT    + M   +  G       +++
Sbjct: 24  TPTPIQAGAIPPALEGRDV------LGIAQTGTGKTASFTLPMITMLARGRARARMPRSL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E    Y ++ ++   ++ G +    + + ++R       ++I T   
Sbjct: 78  VLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDQLIDR----GVDVLIATPGR 133

Query: 386 FQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRT- 434
             D  +  KL+L     ++VDE  R      +   ++           L  +AT      
Sbjct: 134 LLDHFERGKLLLTGVQVMVVDEADRMLDMGFIPDIERIFGLVPFTRQTLFFSATMASEIE 193

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVIIPI--NRIDEVIERLKVVLSE--------GK 483
            +  T L +    ++  +    + I   +     +R D      + +L            
Sbjct: 194 RITNTFLSNPARVEVARQATTGENIAQEVCKFKASRRDRAATEKRRLLRALIDREGEACT 253

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            A   C +         +  V+      + +    A IHG +    +   +  F++GT +
Sbjct: 254 NAIIFCNR---------KMDVDVVAKSLKKYGYDAAPIHGDLDQSKRMETLQGFRDGTLR 304

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
            L+A+ V   G+DV   S +   +        +H++ GR GR       +++  P   KN
Sbjct: 305 FLVASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRI-GRTGRAGRKGKAVMICEPRDEKN 363

Query: 604 SYTRLSVLKN 613
                 +++ 
Sbjct: 364 LDAVERLIEK 373


>gi|53718749|ref|YP_107735.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           K96243]
 gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
 gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894]
 gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
 gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           K96243]
 gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
 gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
          Length = 482

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 125/368 (33%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAKAIPVVLSGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    A    +  ++  +   D+    +K++     K   +
Sbjct: 203 SPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      A IHG  S  ++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 373

Query: 609 SVLKNTED 616
            ++K T  
Sbjct: 374 KLIKRTLS 381


>gi|322698074|gb|EFY89847.1| eukaryotic initiation factor 4A-12 [Metarhizium acridum CQMa 102]
          Length = 402

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  + +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 50  SPSAVQSRAIVQVCKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 103

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+       HI+ GT     D
Sbjct: 104 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HIVSGTPGRVAD 159

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 160 MIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLP---------PATQVVVVSAT 210

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 211 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQ 269

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 270 AVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWAR 329

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 330 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTTE 374


>gi|224285260|gb|ACN40356.1| unknown [Picea sitchensis]
          Length = 411

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 127/343 (37%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+  I    Q +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 60  KPSAIQQRGIVPFCQGLDV------IQQAQSGTGKTATFCSGILQQLDYNVPECQALVLA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++      Q+ V    G        + L+       H+++GT     D
Sbjct: 114 PTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQA----GVHVVVGTPGRVYD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L +T
Sbjct: 170 MLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSNLQVGVFSATMPPEALEIT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                +  +I  K      + IK   + + R D  ++ L          Y      +   
Sbjct: 230 RKFMNNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTL-------CDLYETLAITQSVI 282

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 283 FINTRRKVDMLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 342

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 343 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFITKD 384


>gi|255548421|ref|XP_002515267.1| hypothetical protein RCOM_1346600 [Ricinus communis]
 gi|223545747|gb|EEF47251.1| hypothetical protein RCOM_1346600 [Ricinus communis]
          Length = 791

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 143/384 (37%), Gaps = 45/384 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            PT  Q  A+  +L           I     GSGKT   ++ M   +        E G  
Sbjct: 246 KPTSIQCQALPVVLSGRD------IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 299

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            VI AP   LA Q Y   KK++++  I V  + G M +  + K L+        I++ T 
Sbjct: 300 GVICAPTRELAHQIYLEAKKFSKSHGIRVSAVYGGMSKLEQFKELKA----GCDIVVATP 355

Query: 384 ALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++   L +      ++DE  R          +             P  +TL+ +
Sbjct: 356 GRLIDLLKMKALNMSKATYLVLDEADRMFDLGFEPQIRSIVGQIR------PDRQTLLFS 409

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKKE 497
           +     + K+  +     PI+  +  +   +E I ++  V+    +K  W+  ++    +
Sbjct: 410 ATMPRKVEKLA-REILSDPIRVTVGEVGMANEDITQVVQVIPSDAEKLPWLFEKLPGMID 468

Query: 498 S-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   + ++ V+   S        +A +HG      +  ++  FK+G   +LIAT V
Sbjct: 469 DGDVLVFASKKATVDEIESQLAQKGFKVAALHGDKDQASRMEILQKFKSGVYHVLIATDV 528

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS-CILLYHPPLSKNSYTRLS 609
              G+D+     ++  +        +H++ GR GR  +       L     ++ +   ++
Sbjct: 529 AARGLDIKSLKSVVNFDIARDMDMHVHRI-GRTGRAGDKDGTAYTLITQKEARFAGELVN 587

Query: 610 VLKN-----TEDGFLIAEEDLKQR 628
            L       + +   +A +D + R
Sbjct: 588 SLIAAGQNVSGELMDLAMKDGRFR 611


>gi|332160085|ref|YP_004296662.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|33332423|gb|AAQ11420.1| DeaD box RNA helicase [Yersinia enterocolitica]
 gi|318607355|emb|CBY28853.1| cold-shock DEAD-box protein A [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664315|gb|ADZ40959.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862020|emb|CBX72187.1| cold-shock DEAD box protein A [Yersinia enterocolitica W22703]
          Length = 657

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 146/413 (35%), Gaps = 46/413 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 22  LTDLGYEKPSPIQLECIPHLLNGRDV------LGMAQTGSGKTAAFGLPLLHNIDPSLKA 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       +++
Sbjct: 76  PQVLVLAPTRELAIQVAEALSSFSKHMNGVNVVALYGG----QRYDVQLRALRQGPQVVV 131

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   L Q        L +AT 
Sbjct: 132 GTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTALFSATM 191

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P        V+  + + D ++  L+    +   
Sbjct: 192 PEAIRRITRRFMKEPQEVRIQSSMTTRP-DISQSYWVVDGVRKNDALVRFLEAEDFDAAI 250

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +               + +E   +L     +S A+ +G M+   +E  ++  KNG   +
Sbjct: 251 IFV----------RTKNATLEVAEALERSGYNSAAL-NGDMNQAAREQTLERLKNGRLDI 299

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 300 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVDRRERRLL 358

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
                 +K T     +   + +   E  +         +   +  +++ +LL 
Sbjct: 359 QNIERTMKMTIPPVQLP--NAELLGERRLAKFAAKVGQQLESSDLDMYRALLA 409


>gi|15218071|ref|NP_173516.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|108861895|sp|Q8H0U8|RH42_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 42
 gi|4836896|gb|AAD30599.1|AC007369_9 Similar to RNA helicases [Arabidopsis thaliana]
 gi|332191919|gb|AEE30040.1| DEAD-box ATP-dependent RNA helicase 42 [Arabidopsis thaliana]
          Length = 1166

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/397 (20%), Positives = 157/397 (39%), Gaps = 45/397 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           ++ + +  P   Q  A+  I+           I     GSGKTL  ++ M   ++     
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRD------CIGVAKTGSGKTLGFVLPMLRHIKDQPPV 597

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G   ++MAP   L QQ +  I+K+++   I    + G    A +   L+R      
Sbjct: 598 EAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTE--- 654

Query: 377 HIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            I++ T     D +           ++  +++DE  R                  ++   
Sbjct: 655 -IVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQIT------RIIQNI 707

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  +T++ ++     +  +  K    KP++  +   + +++ I +L  V  E  +   +
Sbjct: 708 RPERQTVLFSATFPRQVETLARKVLN-KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 766

Query: 489 CPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGT 541
              + E  E      F    E+ ++L+     S      +HG     D+ES +  FKN  
Sbjct: 767 LELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDV 826

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           C LLIAT+V   G+DV +  +++  +A +     +H++ GR GR       +       +
Sbjct: 827 CNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRV-GRTGRAGRKGCAVTFISEDDA 885

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           K +   +  L+ +E       +DLK   +G ++ +KQ
Sbjct: 886 KYAPDLVKALELSE---QPVPDDLKALADGFMVKVKQ 919


>gi|302879765|ref|YP_003848329.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302582554|gb|ADL56565.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 484

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 82/461 (17%), Positives = 168/461 (36%), Gaps = 66/461 (14%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+ + + + T  Q  ++   L           I Q   GSGKT    + +   +      
Sbjct: 44  LQQLGYLTMTPIQAESLPITLAG------NDLIAQAKTGSGKTAAFALPLLTRLNPRRFA 97

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    I +  + G      +  +LE      AHI++
Sbjct: 98  IQAMVLCPTRELADQVTQEIRRLARSEDNIKILTLCGGSTMRPQIASLEH----GAHIVV 153

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D +    L        +L   D     G    L    K               
Sbjct: 154 GTPGRIMDHLDRNTLELSALNTLVLDEADRMLDMGFYDSLAYVVKHCPKD---------R 204

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     + ++  +   +   + V +     +  I +    +S  ++   +   +
Sbjct: 205 QTLMFSATYPDGVMRLARQFMRQP--QQVKLEEQHEESKIRQRFYEVSNEERLAAVGTLL 262

Query: 493 EEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              +  +   F +  ++  SL E   +       ++G M   D++ V+  F N +C +L+
Sbjct: 263 RHYRPVSTLAFCNTKQQCRSLLEVLHAQGIVALTLNGDMEQRDRDQVLIQFANRSCSVLV 322

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+     +I  +        +H++ GR GR  E    + L  P       +
Sbjct: 323 ATDVAARGLDITQLEAVINVDVTPDPEVHVHRI-GRTGRAGEDGWALSLVGPTERHRVIS 381

Query: 607 RLSVLKNTEDGFLIAE---ED----------LKQRK-------EGEILG--IKQSGMPKF 644
              +  N  +   IAE   ED          L+           G++LG     +G  + 
Sbjct: 382 IAKLSGNVPEWHEIAELKDEDEAPLVPPMVTLQILGGRKEKIRPGDVLGALTGDAGYTRE 441

Query: 645 LIAQPELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            + +  L D  + + + R  A+  + +      V+G+++++
Sbjct: 442 QVGKIALTDFSTYVAVVRDIAQEAVRKLSA-GKVKGKTVKV 481


>gi|242791510|ref|XP_002481772.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218718360|gb|EED17780.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 387

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 35  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVVRETQALVLS 88

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + LE       H++ GT     D
Sbjct: 89  PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEYGQ----HVVSGTPGRVAD 144

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 145 MIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 195

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 196 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQ 254

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 255 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 314

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 315 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTSD 359


>gi|182678749|ref|YP_001832895.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634632|gb|ACB95406.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 479

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/339 (17%), Positives = 123/339 (36%), Gaps = 27/339 (7%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQA 324
           PT  Q  AI  IL+          I     G+GKT    + +  A+          G + 
Sbjct: 25  PTPIQAQAIPAILEGRD------LIGIAQTGTGKTAAFALPILHALITHPTPAPRGGARV 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q  E  +   Q+  + V ++ G +    + KAL+R       I++ T  
Sbjct: 79  LVLSPTRELASQIAETFRTLGQSHALSVAVVFGGVSPGAQIKALQR----GLDILVATPG 134

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D I    +  +   E        ++           ++ T     ++L  ++    +
Sbjct: 135 RLVDHID-SGVAHLGKTEFFVLDEVDQMLDLGFVKPIRRIVGTLPAKRQSLFFSATMPGE 193

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---- 500
           I K+      + P+   + P+ +  + + +  V +   +K   +     +   +      
Sbjct: 194 IRKLATD-LLKDPVTVSVTPVAKTADRVRQQVVFVETHRKRDILIELFGDAMMTRTIVFT 252

Query: 501 --RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +   ++     E        IHG  S   +E  + +F++G  + L+AT +   GID+ 
Sbjct: 253 RTKRGADKVTQHLEKAGIPAFAIHGNKSQSQRERSLLAFRSGHVRALVATDIAARGIDID 312

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             + ++         + +H++ GR  R       I L  
Sbjct: 313 GVTHVVNYELPEVPESYVHRI-GRTARAGAEGIAISLCD 350


>gi|171319485|ref|ZP_02908588.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171095294|gb|EDT40280.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 481

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 134/376 (35%), Gaps = 43/376 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L           +     G+GKT    + +   +   G        +
Sbjct: 23  TPTPVQVKAIPAVLGGKDV------MAGAQTGTGKTAGFALPLLQRLVQQGSAVSSNRAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +    Y +   +      G +    +   L +       +++ T 
Sbjct: 77  VLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMKLRK----GVDVLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++Q+ ++  +++DE  R        L          +  A P+ R  +L 
Sbjct: 133 GRLLDLNRQNAVQFDQVETLVLDEADRM-------LDLGFARELNAVFAALPVQRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +       R P+   + P N     I++  V + +  K       + E    
Sbjct: 186 SATFTDDIRTMAASILRSPVNISVSPPNVTASKIKQWAVTVDKRNKPDLFMHLVAENNWD 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +       R+ VE   ++ +    ++  IHG      +   ++ FK G  ++L+AT V  
Sbjct: 246 HALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ D  ++I  +        +H++ GR GR       + L     +       +++ 
Sbjct: 306 RGLDIDDLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALIG 364

Query: 613 NT-----EDGFLIAEE 623
            T     E GF  AE 
Sbjct: 365 QTLRREEEPGFE-AEH 379


>gi|170696968|ref|ZP_02888064.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170138142|gb|EDT06374.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 465

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 165/450 (36%), Gaps = 49/450 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  Q +++   L           I Q   GSGKT    +A+ A ++      QA+++ P 
Sbjct: 31  TPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDTRRFDVQAMVLCPT 84

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + +++  +    + V  + G  P   + ++LE      AHI++GT     D 
Sbjct: 85  RELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH----GAHIVVGTPGRIMDH 140

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +    L L  ++        + L +        V  M  T   +TL+ ++     I+K++
Sbjct: 141 LDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTT-RQTLLFSATYPDGIAKLS 199

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSV 503
           ++       K V +     +  I +    ++E ++ + +   +   +        N +  
Sbjct: 200 QQFLRNP--KEVKLEERHDNSKIRQRFYEVAETERLHAVGQLLNHYRPVSTIAFCNTKQQ 257

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
                 +          +HG +   +++ V+  F N +C +L+AT V   G+D+     +
Sbjct: 258 CRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAV 317

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA-- 621
           I  +        +H++ GR GR ++    + L               LK   +   +A  
Sbjct: 318 INVDVTPDPEVHVHRI-GRTGRADQEGWALSLASMDEMGRVGAIEQALKRDVEWHPLAEL 376

Query: 622 -----------EEDLKQRK-------EGEILG--IKQSGMPKFLIAQP--ELHDSLLEIA 659
                       E L+           G++LG     +G     I +       + + I 
Sbjct: 377 KPAGNDTLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVTEFSTYVAIE 436

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           R  A   L +  +   ++G+ +++ L   +
Sbjct: 437 RGVAHDALRKL-NAGKIKGKRVKVRLMDEE 465


>gi|146096170|ref|XP_001467723.1| ATP-dependent RNA helicase [Leishmania infantum JPCM5]
 gi|134072089|emb|CAM70788.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
 gi|322501693|emb|CBZ36774.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 614

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 137/375 (36%), Gaps = 50/375 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+  I  +L           +     GSGKT   LI     +             
Sbjct: 155 KPTPVQKYGIPCVLNG------SDLMACAQTGSGKTAAYLIPAINFMLVNNLNRAKPTNS 208

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           ++   A++++P   L+ Q YE  +K+T  T I   ++ G     H+   L R       +
Sbjct: 209 QSAPSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRHQIHELTR----GCGL 264

Query: 379 IIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLK--------LTQKATAPH 422
           ++ T     D              L+L   D     G + +++                 
Sbjct: 265 LVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPDSDMPPPGERQ 324

Query: 423 VLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            LL +AT     + +    L      ++    +  + I   +  +  +D+      + + 
Sbjct: 325 TLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVEDMDK--RGCLLEVL 382

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +  +   +   +E+K+++++                  + IHG     ++E  +D FK+G
Sbjct: 383 KEHQGERVLVFVEKKRDADY------LERYLRQSRIPCSSIHGDRVQREREEALDIFKSG 436

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
            C++L+AT V   G+D+ + ++++  +        +H++ GR GR  +  + I  ++   
Sbjct: 437 VCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRI-GRTGRAGKRGTAISFFNDKN 495

Query: 601 SKNSYTRLSVLKNTE 615
                  + +L+ T 
Sbjct: 496 RNIVDDLIPLLRETN 510


>gi|77359594|ref|YP_339169.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76874505|emb|CAI85726.1| putative ATP-dependent RNA helicase(rhlE-like) ; DEAD-box protein
           family [Pseudoalteromonas haloplanktis TAC125]
          Length = 432

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 124/346 (35%), Gaps = 40/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q   I  IL           +     G+GKT   ++ +   +            +
Sbjct: 43  QPTAIQIKTIPPILAG------SDVMGSAQTGTGKTAAFVLPLLHKLLNTPKKDEPGVAR 96

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            VI+ P   LAQQ +   +KY Q T I   +  G      + KAL+      A +I+ T 
Sbjct: 97  VVILTPTRELAQQVFASFEKYAQGTNIKGALAYGGASIGPQIKALKD-----AQVIVATP 151

Query: 384 ALFQDSIQYYKLILVIVD--------EQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D I    ++L  VD             G   + +  L         LL +AT    
Sbjct: 152 GRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIKRILRHIPGDRQTLLFSATFDDS 211

Query: 434 TLVLT--SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L+   L + ++ ++ ++ +    ++ VI  ++   +      ++  +  +   I  +
Sbjct: 212 VFALSKKLLKNPELVEVDKRNSAAVEVEQVIYSVDEDRKRELVSHMIGMKNWRQVLIFTR 271

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    + + ++              IHG  S   ++  + +FK G  ++L+AT V 
Sbjct: 272 T--------KQMADQLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGITRVLVATDVA 323

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G+D+     +I     +     +H++ GR GR  E    + L  
Sbjct: 324 ARGLDIPTLRFVINFELPYIAEDYVHRI-GRTGRAGEQGLAMSLVS 368


>gi|149012680|ref|ZP_01833656.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|168483538|ref|ZP_02708490.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1873-00]
 gi|169832933|ref|YP_001694988.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|194396853|ref|YP_002038215.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54]
 gi|225857209|ref|YP_002738720.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
 gi|225859340|ref|YP_002740850.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
 gi|147763280|gb|EDK70218.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|168995435|gb|ACA36047.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|172043152|gb|EDT51198.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1873-00]
 gi|194356520|gb|ACF54968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae G54]
 gi|225721382|gb|ACO17236.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
 gi|225724473|gb|ACO20325.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
          Length = 524

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/362 (20%), Positives = 132/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLQNIETLILDEADEMLNMGFLEDIEA-------IISRVPENRQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRS 502
            K       + P    I       E++++  + + E +K   +   ++  +      F  
Sbjct: 188 IKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGR 247

Query: 503 VVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|58426933|gb|AAW75970.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 482

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 86/460 (18%), Positives = 167/460 (36%), Gaps = 63/460 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + ++  T  Q  ++  IL+ +        I Q   GSGKT    + +   ++     
Sbjct: 41  IDALGYTVLTPVQAQSLPPILRGLDV------IAQAPTGSGKTAAFGLGLLQKLDPALTR 94

Query: 322 GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + ++K       + + ++TG MP   +  +LE       H+++
Sbjct: 95  AQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEA---HDPHVVV 151

Query: 381 GTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    Q+  +           L+L   D     G ++ ++        H          
Sbjct: 152 GTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKH---------- 201

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R  +L S    DI +   +   + PI+  +   +   E+ ++   V    ++       +
Sbjct: 202 RQSLLFSATFPDIIRTLAREILKDPIEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLL 261

Query: 493 EEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
               E      N R  V+      + F  S   +HG M   D++ V+  F N +C +L+A
Sbjct: 262 RFTPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVA 321

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY-- 605
           + V   G+DV D S ++            H++ GR  R  +    + L  P  +  +   
Sbjct: 322 SDVAARGLDVEDLSAVVNYELPTDTETYRHRI-GRTARAGKHGLALSLVAPRETARAQAL 380

Query: 606 --------TRLSVLKNTEDGFLI---AEEDLKQ-------RKEGEILG--IKQSGMPKFL 645
                           T     +   A   L+         + G+ILG    ++G+    
Sbjct: 381 EAEQGQPLKWSRAPLATARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAA 440

Query: 646 IAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           I +  ++   S + IAR      L        ++G+  R+
Sbjct: 441 IGKIAIYPTRSYVAIARAQVAKALAHL-HAGKIKGRRFRV 479


>gi|325684686|gb|EGD26840.1| cold-shock DEAD box protein A [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 478

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 129/348 (37%), Gaps = 40/348 (11%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ----- 323
            F   T  Q   I   L           I Q   G+GKT    + +   ++   Q     
Sbjct: 20  GFEEATPIQAQTIPLALAGQDV------IGQAQTGTGKTAAFGLPILQKLDLDKQEQAIQ 73

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA Q  E + +  ++    V+++ G      + +AL+++      I++GT 
Sbjct: 74  AIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALKKV----PEILVGTP 129

Query: 384 ALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-PIP 432
               D ++   + L  V        DE    G  Q +   LT        LL +AT P P
Sbjct: 130 GRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQTLLFSATMPKP 189

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            + L    + D  + KI  K      I    + +   ++     +++  E      +  +
Sbjct: 190 IQVLGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLIDVENPDLAVVFGR 249

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            + + +   R +V R          + A IHG ++   +  V+  FK G   +L+AT V 
Sbjct: 250 TKRRVDELTRGLVAR--------GYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDVA 301

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+   + +   +      + +H++    GR  +    +    P 
Sbjct: 302 ARGLDISGVTHVYNYDIPQDPDSYVHRI----GRAGKSGMSVTFVTPN 345


>gi|295101226|emb|CBK98771.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           L2-6]
          Length = 648

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 130/348 (37%), Gaps = 38/348 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q SAI  +L+          +     G+GKT    + M   + A         +A
Sbjct: 23  TPSPIQASAIPPVLEGRD------LMGCAQTGTGKTAAFALPMLDRLSAAAPRRKGAVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E    Y +  ++   +I G + QA + +A+ +       I+I    
Sbjct: 77  LILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVEAIRK----GVDILIACPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I    L + ++DE  R      +   +K      ++       + L+ ++
Sbjct: 133 RLNDLIGQGHIDLSNLEVFVLDEADRMLDMGFVHDVKK------VIAKLPAKRQNLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY---WICPQIEEKK 496
               +I ++        P    + P++   E I++    + +G K     W+   +    
Sbjct: 187 TMPKEIEQLAA-GILHDPAFVKVDPVSSTVERIDQSLYFVEKGNKKLLLPWLIKNLTPPV 245

Query: 497 ES-----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           ++       +   ++          + A IHG  S   + + ++ FK G  ++L+AT + 
Sbjct: 246 QNALVFSRTKHGADKIARDLTKQGITAAAIHGNKSQTARVAALEGFKEGKTRVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             GID+ + S +   +        +H++ GR  R     + +    P 
Sbjct: 306 ARGIDISELSHVFNYDLPEVPETYVHRI-GRTARAGADGTAVSFCAPE 352


>gi|154285130|ref|XP_001543360.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1]
 gi|160385733|sp|A6QSQ0|FAL1_AJECN RecName: Full=ATP-dependent RNA helicase FAL1
 gi|150407001|gb|EDN02542.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1]
          Length = 450

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVLRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+       H++ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQ----HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 157 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 208 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQ 266

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 267 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 326

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 327 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTSE 371


>gi|57235067|ref|YP_180931.1| DEAD-box ATP dependent DNA helicase [Dehalococcoides ethenogenes
           195]
 gi|57225515|gb|AAW40572.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dehalococcoides
           ethenogenes 195]
          Length = 560

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 128/372 (34%), Gaps = 43/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ----AVIM 327
            PT  Q  AI  IL+          I     G+GKT    + +   + +  +     +++
Sbjct: 23  EPTPIQAQAIPPILEGHDV------IGLAQTGTGKTAAYALPVIQKMLSTPRGRVRTLVL 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA Q  E  +   Q  +I    I G +    + + L         +++       
Sbjct: 77  APTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLRS----GVDVVVACPGRLL 132

Query: 388 DSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRT--- 434
           D I            LI+   D     G Q  ++  L         LL +AT  P     
Sbjct: 133 DHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLLFSATMPPEVRKL 192

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            + T    + I   T+ PA    +   + P+    +    ++++ +   K+  I  +   
Sbjct: 193 TLETQTNPVTIQIGTQAPASS--VSHSVYPVKNHQKTPLLIEILKTTETKSVLIFART-- 248

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +   E           + A + G +S   + +VM+ F+ G  K+L+AT +   G
Sbjct: 249 ------KYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAARG 302

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+   S +I  +         H++ GR GR +     + L              ++ + 
Sbjct: 303 LDIDHISHVINYDMPDTPEDYTHRI-GRTGRFDRTGQALSLVTGRDGDMVRDIQKLINSP 361

Query: 615 E-----DGFLIA 621
                 DGF  A
Sbjct: 362 IQRLRVDGFDYA 373


>gi|332073919|gb|EGI84397.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA41301]
          Length = 524

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/362 (20%), Positives = 132/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLQNIETLILDEADEMLNMGFLEDIEA-------IISRVPENRQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRS 502
            K       + P    I       E++++  + + E +K   +   ++  +      F  
Sbjct: 188 IKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGR 247

Query: 503 VVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG +    +  V+  FKNG   +L+AT +   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDIAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|327294865|ref|XP_003232128.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892]
 gi|326466073|gb|EGD91526.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892]
          Length = 399

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVLRESQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + LE       H++ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEHGQ----HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 157 MIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDIYRYLP---------PATQVVVVSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 208 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQ 266

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 267 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 326

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 327 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTSE 371


>gi|319938761|ref|ZP_08013125.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
           1_2_62CV]
 gi|319811811|gb|EFW08077.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
           1_2_62CV]
          Length = 565

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 127/363 (34%), Gaps = 34/363 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          +       QA+++AP 
Sbjct: 72  SPIQEQTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKINTENPIVQALVIAPT 125

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL       AHI++GT     D I
Sbjct: 126 RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLDLI 181

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLT 438
           +   L L  V        DE    G        +++       LL +AT     + + + 
Sbjct: 182 KRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRIGMK 241

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + +    KI  K    + +    I +   ++     +++  E  +   +  +       
Sbjct: 242 FMKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRT------ 295

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+ 
Sbjct: 296 --KRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDIS 353

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    I    P          ++ K    G 
Sbjct: 354 GVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGM 412

Query: 619 LIA 621
             A
Sbjct: 413 KPA 415


>gi|187777742|ref|ZP_02994215.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC
           15579]
 gi|187774670|gb|EDU38472.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC
           15579]
          Length = 425

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 131/344 (38%), Gaps = 38/344 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------QA 324
           T  QE +I  IL           +     G+GKT    + +   +             +A
Sbjct: 25  TPIQEKSIPYILDGKD------LVGCAQTGTGKTAAFAVPVLQNLSKDKKVNKNPRTIRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  E  + Y +   +   +I G + Q  + KAL         I+I T  
Sbjct: 79  LVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKALRE----GVDILIATPG 134

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I    +   ++DE  R      +   +K      ++     + + L+ ++
Sbjct: 135 RMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKK------IISKLPKVRQNLLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
               +I+K+ +    + PI+  + P++   + I +    + + +K   +   ++++    
Sbjct: 189 TMPSEITKLVDS-IVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRSLLKHLLKDESIES 247

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F +     N + +    +      IHG  S   ++  +++FK G  ++L+AT +   
Sbjct: 248 ALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVATDIAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GIDV + S +   N        +H++ GR GR       I    
Sbjct: 308 GIDVNELSHVFNYNLPDVPETYVHRI-GRTGRAGAKGVAISFCD 350


>gi|145256950|ref|XP_001401571.1| ATP-dependent RNA helicase ded1 [Aspergillus niger CBS 513.88]
 gi|134034089|sp|A2QI25|DED1_ASPNC RecName: Full=ATP-dependent RNA helicase ded1
 gi|134058481|emb|CAL00690.1| unnamed protein product [Aspergillus niger]
          Length = 678

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/380 (17%), Positives = 140/380 (36%), Gaps = 56/380 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----------EAG 321
           +PT  Q+ +I  +   M+ ++ M        GSGKT   L  + +            +AG
Sbjct: 209 TPTPVQKYSIPIV---MNGRDLM---ACAQTGSGKTGGFLFPILSQAYQNGPSAAPAQAG 262

Query: 322 GQ------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           GQ            ++I+AP   L  Q ++  +K+   + +   ++ G      + + +E
Sbjct: 263 GQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIE 322

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATA 420
           R       +++ T     D I+  +        LIL   D     G + Q  ++ +    
Sbjct: 323 R----GCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDM 378

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PHV         +TL+ ++    DI  +  +   +  +   +  +    E I +    + 
Sbjct: 379 PHV------NDRQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEYVE 431

Query: 481 EGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           +  K   +   +               + + +  +    +       IHG  +  ++E  
Sbjct: 432 DHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERA 491

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           ++ F++G C +L+AT V   G+D+ + + +I  +        +H++ GR GR        
Sbjct: 492 LEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGIAT 550

Query: 594 LLYHPPLSKNSYTRLSVLKN 613
             ++          + +LK 
Sbjct: 551 AFFNRGNRGVVRDLIDLLKE 570


>gi|27468597|ref|NP_765234.1| ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|81843521|sp|Q8CRP6|Y1679_STAES RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SE_1679
 gi|27316144|gb|AAO05278.1|AE016749_224 ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
          Length = 509

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 135/360 (37%), Gaps = 36/360 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + +  K  Q +       PT  Q+ +I   L+          + Q   G+GKT    I +
Sbjct: 7   LGISDKTVQTLEAMGFKEPTPIQKDSIPYALEG------DDILGQAQTGTGKTGAFGIPL 60

Query: 315 AAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
              V  + G Q++I+AP   LA Q  E ++++++  ++ V  + G MP   + K L+R  
Sbjct: 61  IEKVVGQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKVLKR-- 118

Query: 373 HGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
                I++GT     D +          + LIL   DE    G    ++           
Sbjct: 119 --GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQ- 175

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                   +T++ ++     I ++ ++      I    +     D  I+    ++ E +K
Sbjct: 176 -------RQTMLFSATMPKAIQELVQQFMKAPKI-IKTMNNEMSDPQIDEYYTIVKELEK 227

Query: 485 AYWICPQIEEKK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
                  ++  +      F     R + L     S       +HG ++   +  V+  FK
Sbjct: 228 FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFK 287

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +L+AT V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 288 NDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|238491382|ref|XP_002376928.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
 gi|220697341|gb|EED53682.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
          Length = 665

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 135/378 (35%), Gaps = 55/378 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q +AI   +Q          I     GSGKT   L+ +   +             
Sbjct: 270 EPTPIQRAAIPIAMQSRD------LIGVAVTGSGKTASFLLPLLVYIAELPRIDEFEWRK 323

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G  A+++AP   LAQQ     KK+T+     V  I G      +  +L       A I
Sbjct: 324 NDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRN----GAEI 379

Query: 379 IIGTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLT--------------- 415
           II T     D I+   L+L           D     G ++ +                  
Sbjct: 380 IIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSEE 439

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            + + A    + T     +T++ T+     + +I  K   R  I T+      +D V +R
Sbjct: 440 AENSMAMSQHIGTKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQR 499

Query: 475 LKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           ++ +  E K+   +   +   +         N +   +      + +  S   +HG  + 
Sbjct: 500 VEFIAGEDKRKKRLGDILSSGEFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQ 559

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +E+ + S +NG   +L+AT +   GIDV D S++I  N      +  H++ GR GR  
Sbjct: 560 EQREAALASVRNGQTDVLVATDLAGRGIDVPDVSLVINFNMATTIESYTHRI-GRTGRAG 618

Query: 588 EISSCILLYHPPLSKNSY 605
           +    I       +   Y
Sbjct: 619 KSGVAITFLGNEDTDVMY 636


>gi|223634733|sp|A5DQF1|RRP3_PICGU RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|190348857|gb|EDK41404.2| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 475

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 133/348 (38%), Gaps = 22/348 (6%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
               + +  + ++ PT  Q  AI   L+          I     GSGKT    I +  ++
Sbjct: 73  PELMEAIEKLKYTKPTPIQSGAIPHALEGKD------IIGLAQTGSGKTAAFAIPILQSL 126

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
              +    A+++AP   LA Q  E          +    I G M    + + L R    +
Sbjct: 127 WEAQRPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMR----K 182

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            HI++ T     D ++  K   +   +        RL       A   +L        T 
Sbjct: 183 PHILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTY 242

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K+ ++ +  +P+K  +    +  + + +  +++S+G K  ++   + E 
Sbjct: 243 LFSATMTNKIAKL-QRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGYKNTFLIHLLNEF 301

Query: 496 K------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   +   +  +R   L      S   +HG+++   +   ++ FK+G   +LIAT 
Sbjct: 302 MGKSIIVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIATD 361

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   G+D+    ++I  +      A +H++ GR  R  +    I L  
Sbjct: 362 VAARGLDIPSVDVVINYDIPTDSKAYIHRV-GRTARAGKSGKSISLVT 408


>gi|256077147|ref|XP_002574869.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238660085|emb|CAZ31102.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 401

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 126/342 (36%), Gaps = 33/342 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA++++P
Sbjct: 51  PSAIQQRAIKQIVKGRDV------IAQAQSGTGKTATLGISILQMLDTQLRETQALVLSP 104

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I        +      G        + L+       H+I GT     D 
Sbjct: 105 TRELASQIQKVILALGDYMNVQCHACYGGTNIGEDIRKLDYGQ----HVISGTPGRVFDM 160

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLTS 439
           I+   L        +L   DE    G ++++            V+L++AT     L +TS
Sbjct: 161 IRRRSLRTRAVKLFVLDEADEMLDKGFKEQIYDVYRYLPPGTQVVLLSATMPHEILEMTS 220

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
               +  +I  K      + IK   + + R +   + L          Y      +    
Sbjct: 221 KFMTNPVRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTVTQSVIF 273

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N +  V            ++A +HG M   ++E +M  F+ G  ++LI T +   GIDV
Sbjct: 274 CNTKRKVAWLTEKMLKNNFTVASMHGDMVQKEREEIMKDFRAGDSRVLITTDLWARGIDV 333

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              S++I  +  +     +H++ GR GR       I      
Sbjct: 334 QQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKTD 374


>gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281225|gb|ABR89635.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 448

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 125/363 (34%), Gaps = 41/363 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q  AI  +L           +     G+GKT    + +   +   G          
Sbjct: 24  PTPIQAQAIPAVLAG------GDLLAGAQTGTGKTAGFTLPILHRLATSGTPHASASAQR 77

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   LA Q  E ++ Y +   +   +I G +    + K L+        I++
Sbjct: 78  PIRALVLTPTRELAAQVEESVRTYGKYLNLNSAVIFGGVGINPQIKMLKH----GVDILV 133

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D +Q   + L  +     DE  R      +K           ++ A P  R  
Sbjct: 134 ATPGRLLDHMQQGTVNLNHIQILVLDEADRMLDMGFIKDI-------RRVLAALPKNRQN 186

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           +L S    +  K         P    +   N   E+IE+    +   KK   +   I+  
Sbjct: 187 LLFSATFSNEIKALADGLLNSPATIEVARRNSTVEIIEQKIHPVDRDKKHPMLAHLIKSN 246

Query: 496 KESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             S    F       N L E       S   IHG  S   +   +  FK+G+ ++L+AT 
Sbjct: 247 NWSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDGSLQVLVATD 306

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   GID+     ++  +  +     +H++ GR GR       + L      +       
Sbjct: 307 IAARGIDIDQLPHVVNYDLPNVPEDYVHRI-GRTGRAGATGEAVSLVCVDELEMLKDIEK 365

Query: 610 VLK 612
           ++K
Sbjct: 366 LIK 368


>gi|119469744|ref|ZP_01612613.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Alteromonadales bacterium TW-7]
 gi|119446991|gb|EAW28262.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Alteromonadales bacterium TW-7]
          Length = 435

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 149/385 (38%), Gaps = 50/385 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQ------ 323
            PT  Q  AI  +L           I   + GSGKT    + M   +  E G +      
Sbjct: 30  QPTPIQAKAIPSVLAG------SDLIAGANTGSGKTATFALPMLQKLFLEQGAKKTASKG 83

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQAH 377
                +I+ P   LA Q  + +K Y+ N    I    + G +    + +AL     G A 
Sbjct: 84  NFVTGLILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQALR----GGAD 139

Query: 378 IIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           II+ T     D     +I+  K+  +++DE  R                  LL       
Sbjct: 140 IIVATPGRLLDLISSNAIKLDKVTTLVLDEADRMLS------LGFTEELAELLALMPAKK 193

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +T++ ++     ++++T+K     P++  +   ++ +  + +    +++G+K   +   I
Sbjct: 194 QTMLFSATFPEQVTQLTQK-LLTNPVEIQV--QSKDESTLVQRVFTVNKGEKTTVLAHLI 250

Query: 493 EEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +E K        N +   E      E    +  + HG     ++  V++ FK G  ++LI
Sbjct: 251 KEHKWRQALIFVNAKKDCEHLAGKLEKRGINAQVFHGDKGQSERTRVIEKFKAGEIEVLI 310

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL-----YHPPLS 601
           AT +   G+D+    ++I  N        +H++ GR GR  E+   + L     +H    
Sbjct: 311 ATDIAARGLDIAKLPVVINFNLPRSPADYMHRI-GRSGRAGEVGLALSLIDYEDFHHFKI 369

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLK 626
                +L + +    GF + + +L 
Sbjct: 370 IEKKNKLRLEREEVTGFAVNQANLD 394


>gi|56784388|dbj|BAD82427.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group]
 gi|56785381|dbj|BAD82339.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group]
 gi|222619731|gb|EEE55863.1| hypothetical protein OsJ_04500 [Oryza sativa Japonica Group]
          Length = 571

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 139/378 (36%), Gaps = 37/378 (9%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           N      Q I ++    PT  Q       L+       M+ I Q   GSGKTL  L+   
Sbjct: 162 NFPDYCMQAIAKSGFVEPTPIQSQGWPMALKG----RDMIGIAQ--TGSGKTLSYLLPGL 215

Query: 316 AAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
             V A        G   +I+AP   LA Q  +   K+   ++     I G  P+  + + 
Sbjct: 216 VHVGAQPRLEQGDGPIVLILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRD 275

Query: 368 LERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
           L R       I+I T     D ++       ++  +++DE  R          +K     
Sbjct: 276 LRR----GVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRK----- 326

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            ++    P  +TL  ++    ++  +  +         +  P  + +  I+++  V+SE 
Sbjct: 327 -IVAQIRPDRQTLYWSATWPREVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEH 385

Query: 483 KKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +K   +   + +  +          +   ++              IHG  +  +++ V+ 
Sbjct: 386 EKYPRLSKLLSDLMDGSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLA 445

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   ++ AT V   G+DV D   +I  +        +H++ GR GR     +    
Sbjct: 446 EFKSGKSPIMAATDVAARGLDVKDIKCVINFDFPTTLEDYIHRI-GRTGRAGASGTAFTF 504

Query: 596 YHPPLSKNSYTRLSVLKN 613
           +    +K S   + +L+ 
Sbjct: 505 FTLSNAKFSRNLVKILRE 522


>gi|76781331|gb|ABA54551.1| vasa-like protein [Monopterus albus]
          Length = 618

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/372 (15%), Positives = 131/372 (35%), Gaps = 49/372 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------------ 319
            PT  Q+  I  I            +     GSGKT   L+ +   +             
Sbjct: 214 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTASFLLPILQQLMVDGVAASCFSEL 267

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K+   T +   ++ G +   ++ + + +  +    ++
Sbjct: 268 QEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGYQIREILKGCN----VL 323

Query: 380 IGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKL------TQKATAPHVLL 425
            GT     D I        +   L+L   D     G +  ++                L+
Sbjct: 324 CGTPGRLLDMIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPPKENHQTLM 383

Query: 426 MTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            +AT    I R        D     + E       ++   + + +  +  + ++ + + G
Sbjct: 384 FSATFPEDIQRMAADFLKTDYLFLAVGEVGGACTDVEQTFVQVTKFSKRDQLVEFLKTTG 443

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            +   +  + + + +     + +               IHG     ++E  +  F++G C
Sbjct: 444 TERTMVFAETKRQADFIALFLCQE--------KVPTTSIHGDREQPEREKALADFRSGKC 495

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT+V   G+D+ D   ++  +  +     +H++ GR GR   I   +  + P    
Sbjct: 496 LVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRI-GRTGRCGNIGRAVSFFDPNADG 554

Query: 603 N-SYTRLSVLKN 613
             + + + +L  
Sbjct: 555 QLARSLVMILSK 566


>gi|71995514|ref|NP_001021793.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|51988117|gb|AAU20831.1| Vasa- and belle-like helicase protein 1, isoform c, partially
           confirmed by transcript evidence [Caenorhabditis
           elegans]
          Length = 660

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/378 (16%), Positives = 141/378 (37%), Gaps = 51/378 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ +I  +L +         +     GSGKT   L+ +   + AGG         
Sbjct: 161 KPTPVQKHSIPTLLANRD------LMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAF 214

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                     A++++P   LA Q ++   K++  + I   I+ G        +       
Sbjct: 215 TNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGG---RENYRDQVNRLR 271

Query: 374 GQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLT----QKATAP 421
              HI+I T     D I+           L+L   D     G + +++            
Sbjct: 272 AGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTA 331

Query: 422 HVLLMTATPIPRTLVL----TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
               M +   P+ + +        +     +    +  + I+  ++ +N +++    +++
Sbjct: 332 RTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEMEKRSNLMEI 391

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           +++E  +   +   +E K     R   E    L+     S++I HG +  I++E  ++ F
Sbjct: 392 LMNEHSE-NLVLVFVETK-----RGANELAYFLNRQQIRSVSI-HGDLKQIERERNLELF 444

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G C +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++
Sbjct: 445 RSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRI-GRTGRCGNLGIATSFFN 503

Query: 598 PPLSKNSYTRLSVLKNTE 615
                      +++  + 
Sbjct: 504 DKNRGIGRDLKNLIVESN 521


>gi|17510307|ref|NP_491112.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|14574398|gb|AAK68520.1|AC024810_19 Vasa- and belle-like helicase protein 1, isoform b, confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 644

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/378 (16%), Positives = 141/378 (37%), Gaps = 51/378 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ +I  +L +         +     GSGKT   L+ +   + AGG         
Sbjct: 145 KPTPVQKHSIPTLLANRD------LMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAF 198

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                     A++++P   LA Q ++   K++  + I   I+ G        +       
Sbjct: 199 TNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGG---RENYRDQVNRLR 255

Query: 374 GQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLT----QKATAP 421
              HI+I T     D I+           L+L   D     G + +++            
Sbjct: 256 AGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTA 315

Query: 422 HVLLMTATPIPRTLVL----TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
               M +   P+ + +        +     +    +  + I+  ++ +N +++    +++
Sbjct: 316 RTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEMEKRSNLMEI 375

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           +++E  +   +   +E K     R   E    L+     S++I HG +  I++E  ++ F
Sbjct: 376 LMNEHSE-NLVLVFVETK-----RGANELAYFLNRQQIRSVSI-HGDLKQIERERNLELF 428

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G C +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++
Sbjct: 429 RSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRI-GRTGRCGNLGIATSFFN 487

Query: 598 PPLSKNSYTRLSVLKNTE 615
                      +++  + 
Sbjct: 488 DKNRGIGRDLKNLIVESN 505


>gi|17510309|ref|NP_491113.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|7332077|gb|AAF60764.1| Vasa- and belle-like helicase protein 1, isoform a, confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 641

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/378 (16%), Positives = 141/378 (37%), Gaps = 51/378 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ +I  +L +         +     GSGKT   L+ +   + AGG         
Sbjct: 142 KPTPVQKHSIPTLLANRD------LMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAF 195

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                     A++++P   LA Q ++   K++  + I   I+ G        +       
Sbjct: 196 TNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGG---RENYRDQVNRLR 252

Query: 374 GQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLT----QKATAP 421
              HI+I T     D I+           L+L   D     G + +++            
Sbjct: 253 AGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTA 312

Query: 422 HVLLMTATPIPRTLVL----TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
               M +   P+ + +        +     +    +  + I+  ++ +N +++    +++
Sbjct: 313 RTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEMEKRSNLMEI 372

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           +++E  +   +   +E K     R   E    L+     S++I HG +  I++E  ++ F
Sbjct: 373 LMNEHSE-NLVLVFVETK-----RGANELAYFLNRQQIRSVSI-HGDLKQIERERNLELF 425

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G C +L+AT V   G+D+ +   +I  +        +H++ GR GR   +      ++
Sbjct: 426 RSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRI-GRTGRCGNLGIATSFFN 484

Query: 598 PPLSKNSYTRLSVLKNTE 615
                      +++  + 
Sbjct: 485 DKNRGIGRDLKNLIVESN 502


>gi|288928387|ref|ZP_06422234.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288331221|gb|EFC69805.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 447

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 130/359 (36%), Gaps = 36/359 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I  IL+          +     G+GKT   L+ + + ++ GG        +IM
Sbjct: 25  TPIQEHCIPQILEGKD------ILGVAQTGTGKTAAYLLPIMSMLDDGGFPHDAINCIIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ +      +  +        +R     +     A III T   F 
Sbjct: 79  SPTRELAQQIDQAMQGFGYYLDSVSSLPIYGGNDGNRYDQEIKSLRLGADIIIATPGRFI 138

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTAT--PIPRTL 435
             IQ   +        +L   D     G  + +     Q       ++ +AT  P    L
Sbjct: 139 SHIQLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKQLPPTCQTIMFSATMPPKIEQL 198

Query: 436 VLTSLGDIDISKIT-EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
             T L +    K+   KPA +   K  +    +  +V+E +       +   +       
Sbjct: 199 AKTLLKNPVEIKLAVSKPAEKIAQKAYLCYEPQKLKVLEDIFKAGHLNRVIIF------- 251

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
              S  +  V+  N        +   +H  +S  +++ VM  FK+G   +L+AT ++  G
Sbjct: 252 ---SGKKQKVKEINRALVRMKINSDEMHSDLSQEERDQVMFKFKSGATDVLVATDILSRG 308

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           ID+ D +++I  +  H     +H++ GR  R E     I L               L+ 
Sbjct: 309 IDIDDITMVINYDVPHDVEDYVHRI-GRTARAERDGVAITLISDQDVYYFQQIERFLEK 366


>gi|225429488|ref|XP_002278119.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296081635|emb|CBI20640.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 128/343 (37%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I   ++ +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 62  KPSAIQQRGIVPFIKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----SSGVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L +T
Sbjct: 172 MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ +  +E L          Y      +   
Sbjct: 232 RKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTKD 386


>gi|301310161|ref|ZP_07216100.1| putative ATP-dependent RNA helicase RhlE [Bacteroides sp. 20_3]
 gi|300831735|gb|EFK62366.1| putative ATP-dependent RNA helicase RhlE [Bacteroides sp. 20_3]
          Length = 421

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 126/347 (36%), Gaps = 37/347 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           +PT  Q  AI  + Q          +     G+GKT    I +   +        + G +
Sbjct: 23  TPTPIQSEAIPIVSQGYD------LLGCAQTGTGKTAAFSIPIIQRLYLQKKKGYKRGIK 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  E    Y +   +   +I G + Q  + +ALER       I+I T 
Sbjct: 77  ALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEALER----GIDILIATP 132

Query: 384 ALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D I         L   ++DE  R      +   +       +L       ++L  +
Sbjct: 133 GRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIK------RILPLLPKKRQSLFFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-- 496
           +    +I ++       +P K  + P +   + I++    + + +K   +   +E  +  
Sbjct: 187 ATMPPEIERLAGT-ILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINLLKSLLENPELE 245

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  +   ++   +          IHG  S   ++  + +FK+ T ++LIAT +  
Sbjct: 246 SVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRVLIATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            GIDV   + +I     +     +H++ GR GR              
Sbjct: 306 RGIDVDHLTHVINYELPNVPETYVHRI-GRTGRAGREGVAFSFCDAE 351


>gi|238755823|ref|ZP_04617154.1| ATP-independent RNA helicase dbpA [Yersinia ruckeri ATCC 29473]
 gi|238705981|gb|EEP98367.1| ATP-independent RNA helicase dbpA [Yersinia ruckeri ATCC 29473]
          Length = 434

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 174/447 (38%), Gaps = 51/447 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           T  Q +A+  IL+    +       +   GSGKT    I +   +  G    QA+++ P 
Sbjct: 2   TPVQAAALPAILKGQDVR------AKAKTGSGKTAAFGIGLLDKIAVGEFVTQALVLCPT 55

Query: 331 GILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + +++  + TQ I +  + G  P  H+  +L        HI++GT    Q+ 
Sbjct: 56  RELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHA----PHIVVGTPGRIQEH 111

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++   L+L  + +        R+       A + ++    P  +TL+ ++     I +I+
Sbjct: 112 LRKRTLVLDDL-KVLVLDEADRMLDMGFTDAINDVISYTPPQRQTLLFSATYPAGIERIS 170

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSV 503
            K   R+P+   +      D  I+++    +  K+   +   +   +        N +  
Sbjct: 171 AK-VQREPLNVEV-ESEGEDPAIQQVFFETTREKRLPLLISVLSHYQPASCVVFCNTKKD 228

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +      E    S+  +HG +   D++ V+  F N +C++L+AT V   G+D+ D  ++
Sbjct: 229 CQSVYDTLESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAARGLDIKDLELV 288

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL------------ 611
           +           +H++ GR GR       + L  P     ++     L            
Sbjct: 289 VNFELAFDPEVHVHRI-GRTGRAGMSGLAVSLCTPSEMGRAHAIEDYLQIKVKWTPAEQV 347

Query: 612 -KNTEDGFLIAEEDL--------KQRKEGEILG--IKQSGMPKFLIAQPELH--DSLLEI 658
            ++T          L        K R  G+ILG     +G+    + + ++    + + I
Sbjct: 348 SRSTNAILEPEMVTLCIDGGRKAKIR-PGDILGALTGDAGLTAADVGKIDMFPVHAYVAI 406

Query: 659 ARKDAKHILTQDPDLTSVRGQSIRILL 685
            +  AK  + Q      ++G++ +  L
Sbjct: 407 RKASAKRAIQQL-QQGKIKGKNCKARL 432


>gi|194364258|ref|YP_002026868.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194347062|gb|ACF50185.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 471

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 135/373 (36%), Gaps = 38/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----------EAG 321
           +PT  Q+ AI  +L           +     G+GKT    + +   +             
Sbjct: 23  TPTPIQQQAIPLVLAGRD------LLAGAQTGTGKTAAFGLPLLQHLGTASQEVRTGPRK 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+AP   LA Q ++ ++ Y++  +I    I G +   ++   L R       +++ 
Sbjct: 77  PRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLDILRR----GVDLLVA 132

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
                 D ++   + L  ++        + L +    +   +L        +TL+ ++  
Sbjct: 133 CPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQNRQTLLFSATF 192

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF- 500
           + +I ++      R P +  + P N + E I      +  G+K   +   + +       
Sbjct: 193 EDNIRQLA-LEFMRNPEQIQVTPKNTVAETITHRVHPVDGGRKRDLLLHLLAQDSREQTL 251

Query: 501 -----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   ++  +  E      A IHG  S   +   +  FK G   +L+AT +   GI
Sbjct: 252 VFARTKHGSDKLAAFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVLVATDIAARGI 311

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+ +   +I  +        +H++ GR GR       I L        +   + +L+   
Sbjct: 312 DINELPKVINFDLPMVAEDYVHRI-GRTGRNGATGQAISLV-------AQDEVKLLRAIT 363

Query: 616 DGFLIAEEDLKQR 628
               +   D+  R
Sbjct: 364 ---RLLGRDMDIR 373


>gi|320166884|gb|EFW43783.1| DEAD/DEAH box helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 876

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/385 (16%), Positives = 133/385 (34%), Gaps = 45/385 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              +  +   I ++    PT  Q  A+   L           I     GSGKT   L  M
Sbjct: 295 FGFDSPLMAAISKHGYTQPTPIQAQAVPVGLSGRD------IIGIAKTGSGKTAAFLWPM 348

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   VI+AP   L QQ Y    K+ +   + V  I G   +  + K
Sbjct: 349 LVHIMDQDELDVGEGPIGVIVAPTRELCQQIYNEATKFGRVYGLRVAAIYGGESKYEQSK 408

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQKA 418
            L++       I++ T     + ++           L+L   D+    G + +++     
Sbjct: 409 VLQQ----GVEILVATPGRLIEMLKDKLTNMLRATFLVLDEADKMFNMGFEPQVRSIINR 464

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                      P  +TL+ ++     I ++  +     P++ V+  +   ++ + +  V+
Sbjct: 465 IR---------PDRQTLLFSATFKKRIERLA-RDVLTDPVRIVVGDVGEANQDVAQTAVI 514

Query: 479 LSEGKKAY-WICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           L    + + W+   I E   +         ++  +             + +HG +    +
Sbjct: 515 LHSDDEKFSWLTSHIVEFMSTGSVLVFVTKKAGCQLVTDKLNKAHFEASALHGDVDQNSR 574

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
            +++  FK     +L+AT V   G+D+     ++  +         H++ GR GR  E  
Sbjct: 575 NTIIAKFKRKAFPILVATDVAARGLDISHIRTVVNFDVARDIDTHTHRI-GRTGRAGEKG 633

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTE 615
           S   L     +  +   +   ++  
Sbjct: 634 SAYTLLSSKDASFAGDLVRNFESAN 658


>gi|316978431|gb|EFV61418.1| putative ATP-dependent RNA helicase Pl10 [Trichinella spiralis]
          Length = 552

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/378 (16%), Positives = 136/378 (35%), Gaps = 49/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ AI   L++         +     GSGKT   L+ +   + +GG         
Sbjct: 106 KPTPVQKFAIPTALENRD------LMACAQTGSGKTAAFLLPILHHILSGGPEMLRKSDT 159

Query: 324 -----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                      A+++AP   L  Q +    K++  T I+  I+ G     + R  + ++ 
Sbjct: 160 APNGRRRLYPAALVLAPTRELTLQIFNEACKFSYRTPIMSTILYGGR--ENYRDQINKLR 217

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            G  H+++ T     D +    + L      ++DE  R      L +  +     ++ M+
Sbjct: 218 IG-CHLLVATPGRLNDVMNQGYIGLDACRFLVLDEADRM-----LDMGFEPQIRQIVEMS 271

Query: 428 ATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             P     +T++ ++    +I  + +       +   +  +    E I +  V + +  K
Sbjct: 272 GMPRRSHRQTMMFSATFPHEIQMLAQDFLVPDYVFLAVGRVGSTSENITQKLVWVEDYDK 331

Query: 485 AYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
             ++   +               +               S+  IHG +   ++E  ++SF
Sbjct: 332 RAFLLDLLNASSPETLTLIFVETKRGAADLAYFLSGERYSVVAIHGDLKQFEREQHLESF 391

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G   +L+AT V   G+D+ +   +I  +        +H++ GR GR   I      ++
Sbjct: 392 RSGNTPILVATAVAARGLDIPNVKHVINYDLPSEIDEYVHRI-GRTGRVGNIGLATTFFN 450

Query: 598 PPLSKNSYTRLSVLKNTE 615
                 +     +L    
Sbjct: 451 NKNKNMARDLAELLVEAN 468


>gi|209549420|ref|YP_002281337.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535176|gb|ACI55111.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 659

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 136/349 (38%), Gaps = 44/349 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
             T  Q++ +   L           ++    GSGKT+   +A+A  +  GG+        
Sbjct: 22  ELTPVQKAMLDPALA------ASDALVSAQTGSGKTVAFGLALAPTLLEGGERFGNAGAP 75

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    ++   + T  ++    G M     R++LER     AHI++GT
Sbjct: 76  LALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRSLER----GAHIVVGT 131

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I+   L        +L   DE    G ++ L+           L +A    RT
Sbjct: 132 PGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFI---------LDSAPDERRT 182

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I+K+  K   R  ++       +    IE   ++++   +   I   +  
Sbjct: 183 LMFSATVPAAIAKLA-KSYQRNAVRISTAAEAKQHVDIEYRALMVAPSDRENAIINVLRY 241

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            + +N       R+ V    +   +   S+  + G ++  ++   + + ++G  ++ IAT
Sbjct: 242 YEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERTHALQAMRDGRARVCIAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            V   GID+    ++I  +        LH+  GR GR        ++  
Sbjct: 302 DVAARGIDLPGLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGISAMIVP 349


>gi|148259867|ref|YP_001233994.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146401548|gb|ABQ30075.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
          Length = 503

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 122/344 (35%), Gaps = 37/344 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVI 326
           PT  QE AI  +L           +     G+GKT    + M   +          +++I
Sbjct: 42  PTPIQEQAIPTVLMGRDV------LGCAQTGTGKTASFTLPMLDILSGSRARARMPRSLI 95

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E   +Y ++ ++   ++ G      +R  L R       ++I T    
Sbjct: 96  LEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTR----GVDVLIATPGRL 151

Query: 387 QDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIPRT 434
            D  +   L+L  V     DE  R      +   ++      T    L  +AT  P  R 
Sbjct: 152 IDIFERGGLLLSDVRVLVIDEADRMLDMGFIPDIERIVSLLPTMRQTLFFSATMAPEIRR 211

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L    L +     ++        I   +  +   D+     +++ +E  +   +      
Sbjct: 212 LADAFLSNPKQITVSRPATVATTITEGLSLVATHDKREALRRLIRTEDVQNALVF----- 266

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +  V+           S  ++HG M    + + ++ FK G  +LL+ + V   G
Sbjct: 267 ---CNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKAGEIRLLVCSDVAARG 323

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           ID+   S +   +  H     +H++ GR GR       + L  P
Sbjct: 324 IDIGGLSHVFNFDVPHHAEDYVHRI-GRTGRAGMQGRALTLATP 366


>gi|319427184|gb|ADV55258.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 413

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 131/354 (37%), Gaps = 31/354 (8%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + +S PT  Q  AI  IL       +   +     G+GKT    + +   + A    
Sbjct: 16  ITELGYSLPTPIQSEAIPVILA------KQDVMAGAQTGTGKTAAFALPILHLLMAKNVE 69

Query: 322 --------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                    QA+++ P   LA Q ++   KY +NT I + I  G +    +    +    
Sbjct: 70  QKAERVKTVQALVLVPTRELAVQVHQSFVKYAKNTDIRIGIAYGGVSIDAQVDVFKT--- 126

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
               ++I T     D ++   L L  +     F    R+         + +L       +
Sbjct: 127 -GIDVLIATPGRLLDHLRQGVLNLNQLT-TLVFDEADRMLDMGFMDEINAVLKQVPKDRQ 184

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++  D  I +++ K   R+P    +   N     +E+    +   +K  ++   I 
Sbjct: 185 TLLFSATLDDAIFELS-KSLLREPKLIEVTKRNTTAAQVEQRVYAIDSDRKTEFVSHLIR 243

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +  V+R        +      HG +S   +E V+ +FK G  ++L+A
Sbjct: 244 SNHWHQVLIFSRTKQGVDRLVQQLNKLSIVTHAFHGDLSQGAREKVLQAFKLGNIQVLVA 303

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           T V   G+D+V+   +I           +H++ GR GR       I L+    +
Sbjct: 304 TDVAARGLDIVELKYVINFELPFIAEDYIHRI-GRTGRAGSAGLAITLFSQEDT 356


>gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
 gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177]
 gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
 gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
 gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
          Length = 481

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 125/368 (33%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAKAIPVVLSGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    A    +  ++  +   D+    +K++     K   +
Sbjct: 203 SPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      A IHG  S  ++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 373

Query: 609 SVLKNTED 616
            ++K T  
Sbjct: 374 KLIKRTLS 381


>gi|315304037|ref|ZP_07874464.1| ATP-dependent RNA helicase DbpA [Listeria ivanovii FSL F6-596]
 gi|313627596|gb|EFR96302.1| ATP-dependent RNA helicase DbpA [Listeria ivanovii FSL F6-596]
          Length = 474

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 132/370 (35%), Gaps = 38/370 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  ++ +  + +   T  Q+  I   L           + +   GSGKT    I +A  
Sbjct: 11  SEEIKRAINELGYKDATPVQKEVIPVALTGKD------IVAKSQTGSGKTAAFAIPIAEQ 64

Query: 318 V---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           V   E   QA+I+ P   L  Q         +  +I    I G  P A ++  L +    
Sbjct: 65  VIWEENKPQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKN-- 122

Query: 375 QAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
             HI++GT     D I+   L        +L  VDE    G   ++   L         L
Sbjct: 123 --HIVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNL 180

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             +AT       L      D   I        PI  + +     ++ ++   V+++E   
Sbjct: 181 FFSATMPEEMHDLIKRYQNDPVVIEMAAEKTNPITHIEMQTENKEKTLQD--VLITENPD 238

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           +  I    + +            + L +    + A IHG +   ++   MD FK+G  + 
Sbjct: 239 SAIIFCNTKNQ-----------VDELSDLLQVNAAKIHGGLRQEERFRAMDDFKSGKSRF 287

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   GIDV + +++I  +        +H++ GR GR       I       +   
Sbjct: 288 LIATDVAGRGIDVENVTLVINYDLPIEKENYVHRI-GRTGRAGNSGKAISFVKTNENPLL 346

Query: 605 YTRLSVLKNT 614
               ++L  T
Sbjct: 347 RDIEAMLNIT 356


>gi|302654809|ref|XP_003019203.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517]
 gi|291182911|gb|EFE38558.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517]
          Length = 403

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 51  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVLRESQALVLS 104

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + LE       H++ GT     D
Sbjct: 105 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEHGQ----HVVSGTPGRVAD 160

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 161 MIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 211

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 212 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQ 270

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 271 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 330

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 331 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTSE 375


>gi|253681398|ref|ZP_04862195.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
 gi|253561110|gb|EES90562.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
          Length = 370

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 124/346 (35%), Gaps = 34/346 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           PT  QE ++  I      KN    I +   G+GKT   L+ M   +       Q +I+ P
Sbjct: 24  PTPIQEKSMDLI------KNGNDVIAEAQTGTGKTFAFLLPMFENMSPNINKIQGLIVTP 77

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E   K  +   + +    G    + + K L     G  H+II T     D 
Sbjct: 78  TRELAIQITEEANKLKKAKDLNILAAYGGKDISSQLKKL----KGNIHLIIATPGRLLDH 133

Query: 390 IQY--------YKLILVIVDEQHRFGVQQR--LKLTQKATAPHVLLMTATPIPRT--LVL 437
           I+           ++L   D+    G +      +   +    +L  +AT   +   L  
Sbjct: 134 IKRNTINIEKLKTIVLDEADQMLYMGFKNEVEEIMKHISKKTQILCFSATMNSQVKKLAY 193

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
             + + ++  I  +    K IK  ++      +     KV+  +      I  +      
Sbjct: 194 RYMKEPNVVSIQNEEVTLKNIKQAVVETTDRRKQDALCKVLDEDNAFMAIIFCRT----- 248

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +  V+   +       +   IHG ++   +E VM  FKN   + LIAT V   G+D+
Sbjct: 249 ---KRRVDNLEAALHQRGYNCKKIHGDLTQSKRERVMKEFKNMDIQYLIATDVAARGLDI 305

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
              + +   +      + +H++ GR GR  E     L   P   + 
Sbjct: 306 SGVTHVYSYDIPENTESYIHRI-GRTGRAGEKGETCLFIDPKDKRT 350


>gi|150007803|ref|YP_001302546.1| ATP-dependent RNA helicase DeaD [Parabacteroides distasonis ATCC
           8503]
 gi|256840069|ref|ZP_05545578.1| ATP-dependent RNA helicase DeaD [Parabacteroides sp. D13]
 gi|298376828|ref|ZP_06986783.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_19]
 gi|149936227|gb|ABR42924.1| ATP-dependent RNA helicase DeaD [Parabacteroides distasonis ATCC
           8503]
 gi|256738999|gb|EEU52324.1| ATP-dependent RNA helicase DeaD [Parabacteroides sp. D13]
 gi|298266706|gb|EFI08364.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_19]
          Length = 421

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 126/347 (36%), Gaps = 37/347 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           +PT  Q  AI  + Q          +     G+GKT    I +   +        + G +
Sbjct: 23  TPTPIQSEAIPIVSQGYD------LLGCAQTGTGKTAAFSIPIIQRLYLQKKKGYKRGIK 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  E    Y +   +   +I G + Q  + +ALER       I+I T 
Sbjct: 77  ALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEALER----GIDILIATP 132

Query: 384 ALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D I         L   ++DE  R      +   +       +L       ++L  +
Sbjct: 133 GRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIK------RILPLLPKKRQSLFFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-- 496
           +    +I ++       +P K  + P +   + I++    + + +K   +   +E  +  
Sbjct: 187 ATMPPEIERLAGT-ILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINLLKSLLENPELE 245

Query: 497 ----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  +   ++   +          IHG  S   ++  + +FK+ T ++LIAT +  
Sbjct: 246 SVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRVLIATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            GIDV   + +I     +     +H++ GR GR              
Sbjct: 306 RGIDVDHLTHVINYELPNVPETYVHRI-GRTGRAGREGVAFSFCDAE 351


>gi|119898413|ref|YP_933626.1| ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119670826|emb|CAL94739.1| ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 650

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/358 (21%), Positives = 139/358 (38%), Gaps = 34/358 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q + I  +L           + +   G+GKT    + M A ++      Q +++ 
Sbjct: 27  TPSPIQAACIPHLLAGHD------ILGEAQTGTGKTAAFALPMLARLDLADRRPQVLVLT 80

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY  + +    + + G      + + L R     A II+GT     
Sbjct: 81  PTRELAIQVAEAFQKYAHHLRDFHVLPLYGGQSMVVQLRQLSR----GAQIIVGTPGRVM 136

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATA--PHVLLMTATPIP--RTL 435
           D ++   L L  +        DE  R G  + ++   + T       L +AT     R +
Sbjct: 137 DHLERGSLKLDTLSGLVLDEADEMLRMGFIEDVEWILEHTPSGRQTALFSATMPDAIRRV 196

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L +    KI    +    I      +  +D+ ++ L  +L   +K       +  K
Sbjct: 197 AHQHLREPKEVKIRAATSTVSAISQRYWLVRGVDK-LDALTRILDAEEKLDAAIVFVRTK 255

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +      E  + L     ++ A+ +G M+   +E V++  KNG+  +++AT V   GI
Sbjct: 256 TATT-----ELADKLEARGYAAAAL-NGDMTQGLRERVIEQLKNGSLDIVVATDVAARGI 309

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           DV   S +I  +  +   A +H++ GR GR     S IL   P  S+         + 
Sbjct: 310 DVPRISHVINYDIPYDTEAYVHRI-GRTGRAGREGSAILFVAPRESRMLKAIERATRQ 366


>gi|496902|emb|CAA56074.1| translation initiation factor [Homo sapiens]
          Length = 411

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 138/371 (37%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AIK I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 60  KPSAIQQRAIKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+       H++ GT     D
Sbjct: 114 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVAGTPGRVFD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++        +A  V+L++AT     L +T
Sbjct: 170 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPSATQVVLISATLPHEILEMT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           +    D  +I  K      + IK   + + R +   + L  +       +A   C     
Sbjct: 230 NKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT--- 286

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+           +++ +HG M   ++ES+M  F++G  ++LI+T V   G
Sbjct: 287 ------KRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARG 340

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S+II  +  +     +H++ GR G+       I        +            
Sbjct: 341 LDVPQVSLIINYDLPNNRELYIHRI-GRSGQYGRKGVAINFVKNDDIRILRDIEQYYSTQ 399

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 400 IDEMPMNVADL 410


>gi|255578793|ref|XP_002530253.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223530219|gb|EEF32123.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 1173

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/450 (18%), Positives = 167/450 (37%), Gaps = 54/450 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           ++ + +  P   Q  A+  I+           I     GSGKTL  ++ M   ++     
Sbjct: 542 IKKLNYEKPMPIQAQALPIIMSGRD------CIGIAKTGSGKTLAFVLPMLRHIKDQPLV 595

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G   +IMAP   L QQ +  IKK+ +   I    + G    A +   L+R      
Sbjct: 596 EAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTE--- 652

Query: 377 HIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            I++ T     D +           ++  +++DE  R           +           
Sbjct: 653 -IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR----- 706

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  +T++ ++     +  +  K    KP++  +   + +++ I +L  V  E ++   +
Sbjct: 707 -PDRQTVLFSATFPRQVEILARKVLN-KPVEIQVGGRSVVNKDITQLVEVRPESERFLRL 764

Query: 489 CPQIEEKKES----NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGT 541
              + E  E      F    ++ ++L             +HG     D+ES +  FK+  
Sbjct: 765 LELLGEWNEKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV 824

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           C LLIAT++   G+DV +  +++  +  +     +H++ GR GR       I       +
Sbjct: 825 CNLLIATSIAARGLDVKELDLVVNFDVPNHYEDYVHRV-GRTGRAGRKGCAITFISEEDA 883

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS---------GMPKFLIAQPELH 652
           + +   +  L+ +E    +  EDLK   +G ++ + Q          G   F   + E  
Sbjct: 884 RYAPDLVKALELSE---QVVPEDLKALADGFMVKVNQGLEQAHGTGYGGSGFKFNEEEDE 940

Query: 653 DSLLEIARKDAKHILTQDPDLTSVRGQSIR 682
             +     +  ++   +D   +    + IR
Sbjct: 941 KRIAAKKAQAKEYGFEEDKSDSEDEDEGIR 970


>gi|149204026|ref|ZP_01880994.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035]
 gi|149142468|gb|EDM30513.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035]
          Length = 429

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/356 (19%), Positives = 124/356 (34%), Gaps = 25/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQA----- 324
            PT  Q  AI   L           +     G+GKT+   + +  A+    G  A     
Sbjct: 18  EPTPIQTHAIPHALNGFDV------LGLAQTGTGKTMAFGLPLITALMQAPGKPAPKTIR 71

Query: 325 -VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA Q  + +    +++ I + ++ G      + K LE+       I++ T 
Sbjct: 72  SLILAPTRELASQIRDALLPLVKDSPIKINLVVGGASINPQIKRLEQ----GTDILVATP 127

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D I    + L            Q L L        +  + A    +T++ ++    
Sbjct: 128 GRLLDLIDRRAVRLDAAHFLVLDEADQMLDLGFIHALRRIAGLLAA-ERQTMLFSATMPK 186

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-----S 498
            + ++            V  P    D+V + +  V    K    I    + K E      
Sbjct: 187 QMEELAGSYLKHPKRVQVSPPGKAADKVTQEVHFVAKAAKPDLLIELLAKHKSELALVFG 246

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +   ++     E    S+A IHG  S   +E  + SF++G  K+L+AT V   G+D+ 
Sbjct: 247 RTKHGSDKLAKRLEQAGYSVAAIHGNKSQGQRERALKSFRDGHVKILVATDVAARGLDIP 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           D   +      +     +H++ GR  R     + I    P           VL  T
Sbjct: 307 DVKHVYNYELPNVPDNYVHRI-GRTARAGRDGAAIAFCAPDEMGELKDIQKVLGTT 361


>gi|118444590|ref|YP_878428.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118135046|gb|ABK62090.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 371

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 134/352 (38%), Gaps = 22/352 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  QE++I+ I            I +   G+GKTL  L+ +   +       Q +I+ 
Sbjct: 24  SPTPIQENSIEFIKMGKDV------IAEAQTGTGKTLAFLLPIFENISLESNFVQVLIVT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E   K  +   I +    G      + K L     G   +II T     D
Sbjct: 78  PTRELAIQITEEAMKLKKAKDINILAAYGGKDIQSQLKKL----KGNIQLIIATPGRLLD 133

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +    + L  +         Q L +  K     ++  T+    +TL  ++  + D+ K+
Sbjct: 134 HLNRSTIKLDKLKTLVLDEADQMLYMGFKNEVEKIISYTS-KKHQTLCFSATMNSDVKKL 192

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---KESNFRSVVE 505
             +   ++P    +       + I++  V  ++ +K   +C  ++E        F     
Sbjct: 193 AYRYM-KEPKVVSVKAEEVTLKNIQQFVVETTDRRKQDALCSVLDEDNPFMAIIFCRTKR 251

Query: 506 RFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           R ++L E           +HG ++   +E VM  FKN   + LIAT V   G+D+   + 
Sbjct: 252 RVDNLEEALHKRGYNCDKLHGDLAQAKRERVMKKFKNMDTQYLIATDVAARGLDITGVTH 311

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +   +      + +H++ GR GR  E     L   P   +   T    +K T
Sbjct: 312 VYSYDIPENAESYIHRI-GRTGRAGEEGKTCLFIDPKDKRLLETIEKEIKLT 362


>gi|91785132|ref|YP_560338.1| putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans
           LB400]
 gi|91689086|gb|ABE32286.1| Putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans
           LB400]
          Length = 543

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 121/348 (34%), Gaps = 42/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   + +           
Sbjct: 45  TPTPIQTQAIPAVLNG------GDLLAGAQTGTGKTAGFTLPILQRLNSSPAVANGSGKR 98

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q  E ++ Y +  ++   ++ G +    +  AL         I++
Sbjct: 99  AVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRS----GVDIVV 154

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT- 429
            T     D +Q           L+L   D     G    +K  L +       LL +AT 
Sbjct: 155 ATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATF 214

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL    L    + ++  +    + +   I P++R  +      ++         +
Sbjct: 215 SDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNWFQVLV 274

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +         +    R          S   IHG  S   +   +  FK+GT ++L+AT
Sbjct: 275 FTRT--------KHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVAT 326

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            +   GID+     ++  +  +     +H++ GR GR       + L 
Sbjct: 327 DIAARGIDIDQLPHVVNYDLPNVPEDYVHRI-GRTGRAGATGEAVSLV 373


>gi|308050173|ref|YP_003913739.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632363|gb|ADN76665.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 499

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 135/368 (36%), Gaps = 36/368 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
            P+  Q  AI  IL           +     G+GKT    + M   +  G +A       
Sbjct: 23  EPSPIQAQAIPAILAGKDV------MAAAQTGTGKTAGFTLPMLQNLSRGTRARSNRVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y QN  +   ++ G +    + +AL R     A +++ T  
Sbjct: 77  LVLTPTRELAAQVAESVQTYGQNLPLRSVVVFGGVSINPQMQALRR----GADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L L+++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLLDLFSQNAVKFEDLELLVLDEADRMLDMGFIRDIRK-------ILALLPKRRQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                  +   +    +P++  + P N     + +    + +G+K   I   I E     
Sbjct: 186 ATFSGEIRELARGLLNQPVEVDVSPRNSTARTVVQRLHPVDKGRKPALISKLIREHNWHQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   +  FK+GT + L+AT +   
Sbjct: 246 VLIFTRTKHGANRLAQKLERDGIQAAAIHGNKSQGARTRALAGFKDGTVQALVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++  +        +H++ GR GR       I L      K       +++ 
Sbjct: 306 GLDIHQLPQVVNFDLPQVAEDYVHRI-GRTGRAGAEGQAISLVCAEEFKLLQAIEKLIQK 364

Query: 614 TEDGFLIA 621
             +   +A
Sbjct: 365 PIERVELA 372


>gi|322412126|gb|EFY03034.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 539

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 125/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +       QA+++AP 
Sbjct: 25  SPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ +   + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   LIL  V        DE    G        +++       LL +AT P P + + + 
Sbjct: 135 KRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  +I  K      +    + +   ++     +++     +   +  +       
Sbjct: 195 FMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D+ 
Sbjct: 249 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR  +    I    P 
Sbjct: 307 GVTHVYNYDITQDPESYVHRI-GRTGRAGKSGESITFVSPN 346


>gi|228474931|ref|ZP_04059660.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
 gi|314935968|ref|ZP_07843318.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
 gi|228271163|gb|EEK12543.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
 gi|313655974|gb|EFS19716.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
          Length = 503

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 139/375 (37%), Gaps = 41/375 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L  + F  PT  Q+ +I   L+          + Q   G+GKT    I +   V  ++G 
Sbjct: 17  LEEMGFKEPTPIQKESIPYTLEGKD------ILGQAQTGTGKTGAFGIPLIEKVVGKSGV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+I+AP   LA Q  E ++++++   I V  + G MP   + KAL+R       I++GT
Sbjct: 71  QALILAPTRELAMQVAEQLREFSRGQNIQVVTVFGGMPIDRQIKALKR----GPQIVVGT 126

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +          + LIL   DE    G    ++                   +T
Sbjct: 127 PGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQ--------RQT 178

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     I  + ++   + P     +     D  I+    ++ E +K       ++ 
Sbjct: 179 MLFSATMPKAIQTLVQQFM-KSPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDV 237

Query: 495 KK---ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +      F     R + L             +HG ++   +  V+  FKN    +L+AT
Sbjct: 238 HQPELAIVFGRTKRRVDELTSALLTKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVAT 297

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+   S +   +      +  H++ GR GR  +    +   +P         +
Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP----IEMDYI 352

Query: 609 SVLKNTEDGFLIAEE 623
             ++   D  + A  
Sbjct: 353 RQIEEVNDRRMKALR 367


>gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
          Length = 509

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 126/364 (34%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 55  TPTPIQAQAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 108

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 109 PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 164

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 165 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 224

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    +    +  ++  +   D+    ++++   G K   +
Sbjct: 225 SPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIV 284

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      + IHG  S +++   +D+FK G  + L+AT
Sbjct: 285 F--------CNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVAT 336

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 337 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGATGDALSLCSPNERKQLADIE 395

Query: 609 SVLK 612
            ++K
Sbjct: 396 KLIK 399


>gi|73540223|ref|YP_294743.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72117636|gb|AAZ59899.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 506

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/356 (17%), Positives = 120/356 (33%), Gaps = 28/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  IL+          +     G+GKT    + M   +             
Sbjct: 23  TPTPIQAQAIPAILKG------GDLLAGAQTGTGKTAGFTLPMLQLLSESAPQRQGKPAV 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LA Q  E ++ Y +  ++   ++ G +    + + L R       I++ T
Sbjct: 77  RALVLTPTRELAAQVEESVRNYGKYVRLRSMVMFGGVGINPQIEQLRR----GVEIVVAT 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D +    + L  V E        R+           +L    P  + L+ ++   
Sbjct: 133 PGRLLDHVSQRTIDLSSV-ELLVLDEADRMLDMGFIHDIRKILNVLPPKRQNLLFSATFS 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
            DI  + ++     P    +   N   E + +    +   +K   +   + E        
Sbjct: 192 DDIRALADRLLN-NPASIEVARRNTTAETVAQRVYPVDRERKRELLAHLVREHDWHQVLV 250

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +    R          S   IHG  S   +   +  FK GT +LL+AT +   GID
Sbjct: 251 FTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKAGTLRLLVATDIAARGID 310

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     ++  +  +     +H++ GR GR       I L              ++K
Sbjct: 311 IDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGAEGEAISLVCVDEHGLLRDIERLIK 365


>gi|269468408|gb|EEZ80073.1| hypothetical protein Sup05_1317 [uncultured SUP05 cluster
           bacterium]
          Length = 614

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 126/353 (35%), Gaps = 41/353 (11%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---A 320
           +L +I +  P+  QE  I  +L           I Q   G+GKT    + +   ++    
Sbjct: 26  VLDSIGYETPSPIQEQCITHLLNGED------IIGQAQTGTGKTAAFALPLLDNIDLSLN 79

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHII 379
             Q +I+AP   LA Q  E ++ Y +      V  I G      + + L+R      H +
Sbjct: 80  APQLLILAPTRELAIQVSEAVQVYARGLKGFHVLPIYGGQSYDIQLRPLKR----GVHCV 135

Query: 380 IGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           +GT     D I+   L L  +        DE  + G    +K   +              
Sbjct: 136 VGTPGRVMDHIKKGTLKLDQLKSFVLDEADEMLKMGFIDDIKWVMERIPEQ--------- 186

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            +  + ++     I ++ EK      I   +         I +   ++    +      +
Sbjct: 187 RQIALFSATMPNIIKRVAEKFLNNPKI-VKVKTKTETAPTIGQKYCLVGGLSQKLDALTR 245

Query: 492 IEEKKESNFRSVVERFNSLHEHFTS-------SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           I E  E +   +  R  +L    +        S   I+G +    +E +++ FK G   +
Sbjct: 246 ILEVTEFDAMIIFARTKTLTIELSEKLSARGFSAEAINGDIQQSQREKIINKFKKGGIDI 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           L+AT V   G+DV   S ++  +        +H++ GR GR       IL   
Sbjct: 306 LVATDVAARGLDVPRISHVVNYDIPQDAETYVHRI-GRTGRAGREGEAILFVS 357


>gi|227832855|ref|YP_002834562.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182657|ref|ZP_06042078.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|227453871|gb|ACP32624.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 669

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 135/356 (37%), Gaps = 36/356 (10%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
              Q+ +  + F+ P+  QE  I  +++          +     G+GKT    + + + +
Sbjct: 72  DDVQEAVSKVGFTKPSPIQEETIPILMEGRDV------VGLAQTGTGKTAAFALPVLSQI 125

Query: 319 EAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHG 374
           +      QA+++AP   LA Q  +  + +  +   I V  I G      +   L R    
Sbjct: 126 DTEARYPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRR---- 181

Query: 375 QAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVL 424
            A II+GT     D +        Q   L+L   DE    G Q+ +   L        V 
Sbjct: 182 GAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA 241

Query: 425 LMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT     R L    L +     +  +      I    +      ++    +++    
Sbjct: 242 LFSATMPNSIRRLSKQYLNNPAEVTVKSERRTNDNITQRFLLTPHRHKMDAFTRILEVID 301

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             A  +  + +   E       +  +SL E   ++ AI +G ++   +E  +D  K+G  
Sbjct: 302 YDAIIVFCRTKHATE-------DVADSLKEAGYNAAAI-NGDIAQQQRERTVDQLKDGRL 353

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +L+AT V   G+DV   + ++  +  +   + +H++ GR GR       IL   P
Sbjct: 354 DILVATDVAARGLDVDRITHVVNYDIPNDTESYVHRI-GRTGRAGRTGEAILFVTP 408


>gi|256860906|gb|ACV32355.1| vasa [Nibea mitsukurii]
          Length = 640

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 124/355 (34%), Gaps = 36/355 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 224 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQQLMADGVAASSFSEL 277

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              + +I+AP   L  Q Y   +K++  T +   ++ G +   ++ + + R  +    ++
Sbjct: 278 QEPEVLIVAPTRELINQIYMEARKFSYGTCVRPVVVYGGVSTGYQIREISRGCN----VL 333

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L      ++DE  R                    M      +T
Sbjct: 334 CGTPGRLLDVIGRGKIGLSKLRYFVLDEADRMLDMGFEP--DMRRLVGSPGMPTKEHRQT 391

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI ++         +   +  +      +E+  V +++  K   +   ++ 
Sbjct: 392 LMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFVQVTKFSKREQLLDLLKT 451

Query: 495 ------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +           IHG     ++E  +  F++G C +L+AT
Sbjct: 452 TGTERTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVAT 511

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +V   G+DV D   ++  +  +     +H++ GR GR       +  Y P     
Sbjct: 512 SVAARGLDVPDVLNVVSFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFYDPDADGQ 565


>gi|209809235|ref|YP_002264773.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
           [Aliivibrio salmonicida LFI1238]
 gi|208010797|emb|CAQ81193.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
           [Aliivibrio salmonicida LFI1238]
          Length = 641

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 138/369 (37%), Gaps = 35/369 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +PT  Q  +I  +L           + +   G+GKT    + +   +   +   QA+IMA
Sbjct: 28  APTPIQAESIPLLLAGRD------ALGKAQTGTGKTAAFSLPLLNKINLKQHNPQAIIMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    +K   +N   + V  I G      + +AL R     AHI++GT    +
Sbjct: 82  PTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALSR----GAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTAT--PIPRTL 435
           D +   +L L  V        DE  + G    +     +       +L +AT  P+ +T+
Sbjct: 138 DLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPETAQRILFSATMPPMVKTI 197

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           V   L D     +       + +      +  +++     +++ +E   A  +  +    
Sbjct: 198 VDRYLRDPARVDVAGTNNTVEQVTQNFWIVKGVEKDEAMSRLLETEEIDASIVFVRT--- 254

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                R   ER            A +HG +    +E  +D  K G   +L+AT V+  G+
Sbjct: 255 -----RQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVARGL 309

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   + +   +      + +H++ GR GR       ILL      +   T   V K++ 
Sbjct: 310 DVPRITHVFNYDIPFDVESYIHRI-GRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSM 368

Query: 616 DGFLIAEED 624
               +   D
Sbjct: 369 VEIELPHRD 377


>gi|170755466|ref|YP_001781330.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum B1 str.
           Okra]
 gi|169120678|gb|ACA44514.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B1 str.
           Okra]
          Length = 481

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 144/391 (36%), Gaps = 47/391 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  P++ Q+  I  IL+D         I++ + GSGKT    I +   +E     
Sbjct: 19  LGKLGYKNPSEVQKQVIPLILKDKD------IIVKSETGSGKTAAFSIPVCEKLELEEKD 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++ P   LA Q  E I       ++    I G  P + +++ L++    + H+++G
Sbjct: 73  PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELKQ----RVHLVVG 128

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L        +L   DE    G   Q   + ++     V ++ +  IP
Sbjct: 129 TPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVTMLFSATIP 188

Query: 433 R---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L    + +     I  +      I      +   D+     K++  E      I 
Sbjct: 189 EKIENLCKKYMNNPQNININPENITTDTINQCYYEVEDKDKFSLLQKIIYKEVVDNSIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
               EK +       E   ++ +   +++ + HG M   D+   M  FK G  + L+ T 
Sbjct: 249 CNTREKVD-------EVLKNMKKKGLNAVGL-HGGMEQKDRLETMKKFKEGEFQFLVCTD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GI + + S +I     +   + +H++ GR GR  +    I    P           
Sbjct: 301 VAARGIHIENISHVINYEMPYEKESYVHRI-GRTGRAGKEGVAITFIEPNKVIFLEDIED 359

Query: 610 VL------------KNTEDGFLIAEEDLKQR 628
            +            +  + G  I EE++K R
Sbjct: 360 YIEKEIPKRKEPSSEEVDKGKKIFEENIKNR 390


>gi|312143554|ref|YP_003995000.1| DEAD/DEAH box helicase domain protein [Halanaerobium sp.
           'sapolanicus']
 gi|311904205|gb|ADQ14646.1| DEAD/DEAH box helicase domain protein [Halanaerobium sp.
           'sapolanicus']
          Length = 529

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 127/347 (36%), Gaps = 36/347 (10%)

Query: 267 RNIPFSPT-KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F  T   Q +AI  +L           + Q   G+GKT    I +   ++A     
Sbjct: 20  DDMGFEETTPIQSNAIPAVLAGKD------IVGQAQTGTGKTAAFGIPLLEEMDANKKDP 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+I+ P   LA Q  E +K+  +  + I  + + G      + +AL +       I+IG
Sbjct: 74  QAIILCPTRELAIQVSEELKRLAKYKKRIYTLPVYGGQSIQRQIRALNK----GVQIVIG 129

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTAT-- 429
           T     D I+   L L  +        D     G    ++  L         L  +AT  
Sbjct: 130 TPGRVMDHIRRGTLKLNQINYFVLDEADVMLDMGFIDDIETVLRDIPEDRQTLFFSATIP 189

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              R L      +    K+  +      I+     + R D++    +++     +   + 
Sbjct: 190 KSIRRLSRKYQKNSQFLKVAHEKLTVPSIEQYYYELRRHDKLKALTRLLDLNNPELAIVF 249

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N R +V+  N   +        IHG ++   ++ VM  F+NG  ++L+AT 
Sbjct: 250 --------CNTRKMVDELNIKLQARGYLSDAIHGGLNQNQRDRVMGKFRNGIIEILVATD 301

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           V   GIDV D   +   +        +H++ GR GR  +        
Sbjct: 302 VAARGIDVDDIEAVFNYDLPQDTDYYVHRI-GRTGRAGKSGKAFSFV 347


>gi|259418826|ref|ZP_05742743.1| putative ATP-dependent RNA helicase RhlE [Silicibacter sp.
           TrichCH4B]
 gi|259345048|gb|EEW56902.1| putative ATP-dependent RNA helicase RhlE [Silicibacter sp.
           TrichCH4B]
          Length = 442

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 131/370 (35%), Gaps = 28/370 (7%)

Query: 260 KIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           K     +  + F +PT  Q  AI   L           +     G+GKT    + + A +
Sbjct: 11  KHLHTRMEAMGFNTPTPIQARAIPHALNGQDV------LGLAQTGTGKTAAFGVPLVAQM 64

Query: 319 EAGGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
              GQ         +I+AP   LA Q  E ++  T+ + +   ++ G +    +   L R
Sbjct: 65  LEYGQKPAAGTVRGLILAPTRELANQIAETLRGLTEGSPLKTGLVVGGVSINPQINRLSR 124

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
                  I++ T     D +    L L   D        Q L L        +       
Sbjct: 125 ----GTDILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKI-AALLPE 179

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +T++ ++     +++I      + P++  + P  +    + +    +++ +K   +  
Sbjct: 180 KRQTMLFSATMPKQMNEIANAYL-KSPVRIEVTPPGKPATKVTQSVHFIAKAEKLSLLKE 238

Query: 491 QIEEKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            + +            +  +E+   + +      A IHG  S   +E  + +FK+G   +
Sbjct: 239 LLAKHDGERTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEITV 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT V   G+D+ D   +      +   A +H++ GR  R  +    +    P    + 
Sbjct: 299 LVATDVAARGLDIPDVKYVYNYELPNVPDAYVHRI-GRTARAGKDGQAVAFCAPDEIGDL 357

Query: 605 YTRLSVLKNT 614
                 +  T
Sbjct: 358 KAIQKTMGIT 367


>gi|167763057|ref|ZP_02435184.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC
           43183]
 gi|167699397|gb|EDS15976.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC
           43183]
          Length = 430

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 129/357 (36%), Gaps = 33/357 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE +I  IL+          I     G+GKT   L+ +   +  GG        ++M
Sbjct: 25  TPIQEKSIPVILEGRD------LIAVAQTGTGKTAAYLLPILNKLSEGGHPEDSINCIVM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LAQQ  + ++ ++    +    + G        +    +  G A ++I T     
Sbjct: 79  APTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKRGLTLG-ADVVIATPGRLI 137

Query: 388 DS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                  +   ++   I+DE  R      L +        ++        +T++ ++   
Sbjct: 138 AHLSLGYVDLSRVSYFILDEADRM-----LDMGFYDDIMQIVKFL-PKERQTIMFSATMP 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
             I ++ +          V + +++  E I +   +  E +K   I     E+       
Sbjct: 192 AKIQQLAQNILHNPAE--VKLAVSKPAEKIVQAAYICYENQKLGIIRSLFAEQTPERVII 249

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +    ++  +H  +    +E VM  FK G   +L+AT ++  GID
Sbjct: 250 FASSKLKVKEVAKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGID 309

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + D  ++I  +  H     +H++ GR  R       +   +     N  +  + L+ 
Sbjct: 310 IDDIRLVINYDVPHDSEDYVHRI-GRTARANNDGVALTFVNEKEQTNFKSIENFLEK 365


>gi|123968740|ref|YP_001009598.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           AS9601]
 gi|123198850|gb|ABM70491.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           AS9601]
          Length = 593

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 131/345 (37%), Gaps = 43/345 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMA 328
           PT  Q++AI +++           + Q   G+GKT    + +   +        + ++M 
Sbjct: 74  PTPIQKAAIPELMLGRD------LLGQAQTGTGKTAAFALPLIEKLTDNKELNAKVLVMT 127

Query: 329 PIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    F    ++++      I G     ++  AL+R    +  +++GT     
Sbjct: 128 PTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKR----KVDVVVGTPGRIM 183

Query: 388 DSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVL 437
           D I+           L+L   DE    G  + ++    Q      ++L +AT        
Sbjct: 184 DHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSAT-------- 235

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                 +I  I +K     P + +I  + +  ++I +  + +    K   +   +E   E
Sbjct: 236 ---MPSEIRNIAKKYLN-DPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNNE 291

Query: 498 SNFRSVVERF-----NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                V  +          E+   ++A+++G +    +E+ +D  K G   +L+AT V  
Sbjct: 292 GVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAA 351

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            G+DV    +++  +         H++ GR GR       IL  +
Sbjct: 352 RGLDVERIKLVVNYDFPFDKETYTHRI-GRTGRAGRSGEAILFVN 395


>gi|3775985|emb|CAA09195.1| RNA helicase [Arabidopsis thaliana]
 gi|9294443|dbj|BAB02563.1| RNA helicase [Arabidopsis thaliana]
          Length = 391

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 137/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ A+  ILQ          I Q   G+GKT +  +++   V+      QA+I++
Sbjct: 40  KPSAIQQRAVMPILQGRDV------IAQAQSGTGKTSMIALSVCQVVDTSSREVQALILS 93

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I+    +  I      G        + LE       H++ GT     D
Sbjct: 94  PTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEH----GVHVVSGTPGRVCD 149

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        IL   DE    G + ++            V L++AT     L +T
Sbjct: 150 MIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMT 209

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    +  KI  K      + IK   + + + +   + L  +       +A   C     
Sbjct: 210 SKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT--- 266

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+  +        +++ +HG M   +++++M+ F++G  ++LI T V   G
Sbjct: 267 ------KRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARG 320

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV   S++I  +  +     +H++ GR GR       I        K            
Sbjct: 321 IDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ 379

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 380 IDEMPMNVADL 390


>gi|309360868|emb|CAP30554.2| hypothetical protein CBG_11408 [Caenorhabditis briggsae AF16]
          Length = 559

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 122/374 (32%), Gaps = 35/374 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q  +    +           I     GSGKTL  ++     +          G  
Sbjct: 151 KPTVIQSISWPIAMSGRD------IISIAKTGSGKTLAFMLPALVHITKQPHRQRGEGPS 204

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LAQQ  E    +  +  + +  + G   +  + + LER       I + T 
Sbjct: 205 VLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLER----GVDIAVATP 260

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D +            L+L   D     G   Q R  + Q       L+ +AT    
Sbjct: 261 GRLLDFLDNGTTNMKRCSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMFSATWPKE 320

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R+L      D     +           T ++ +        +L  +L+          +
Sbjct: 321 VRSLASDFQKDAAFLNVGSLELAANHNITQVVDVLEEHAKQAKLMELLNHIMNQ----KE 376

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +       +   +               IHG  +  +++ V+  FK G   +L+AT V 
Sbjct: 377 CKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKMPILLATDVA 436

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV D   +I  +  +     +H++ GR GR ++  +    +    +  +   L VL
Sbjct: 437 ARGLDVDDIKFVINYDYPNNSEDYVHRI-GRTGRRDKKGTAYTFFTHTNASKAKDLLKVL 495

Query: 612 KNTEDGFLIAEEDL 625
              +     A  D+
Sbjct: 496 DEAKQNVPQALRDM 509


>gi|255020706|ref|ZP_05292767.1| Cold-shock DEAD-box protein A [Acidithiobacillus caldus ATCC 51756]
 gi|254969860|gb|EET27361.1| Cold-shock DEAD-box protein A [Acidithiobacillus caldus ATCC 51756]
          Length = 615

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/356 (21%), Positives = 138/356 (38%), Gaps = 36/356 (10%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +  Q+ +R I +  P+  Q  +I  +L           I     G+GKT    + + + V
Sbjct: 19  EPLQRAVREIGYEQPSPIQAQSIPPLLAGRDV------IGLAQTGTGKTAAFALPLLSRV 72

Query: 319 EAG---GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHG 374
           +      Q +++AP   LA Q  E ++ Y +      V  I G      + K L+R    
Sbjct: 73  DLSLRFPQILVLAPTRELAIQVAEAMQSYAKFLPGFHVLPIYGGQSMGLQLKQLQR---- 128

Query: 375 QAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQ--RLKLTQKATAPHVL 424
              +++GT    QD ++   L        +L   DE  R G        L    T   V 
Sbjct: 129 GVQVVVGTPGRIQDHLRRETLKLDRLQAVVLDEADEMLRMGFIDAVEEILKHTPTQRQVA 188

Query: 425 LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           L +AT     R +  T L D    +I    +    I+     ++   ++    +++  E 
Sbjct: 189 LFSATMPEAIRRIARTYLRDPLEIRIKSTTSTVAAIRQRYWLVSGTHKLDALTRILEVED 248

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
             A+ I  + +        + VE    L     +    ++G M+   +E  ++  K+G+ 
Sbjct: 249 SNAWIIFVRTKT-------ATVELAERLEARGYA-CGALNGDMTQAMREQTIERVKSGSL 300

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +++AT V   G+DV   + +I  +  +   A +H++ GR GR       IL   P
Sbjct: 301 DIVVATDVAARGLDVERITHVINYDIPNDTEAYVHRI-GRTGRAGRKGEAILFVAP 355


>gi|309781736|ref|ZP_07676469.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
 gi|308919377|gb|EFP65041.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
          Length = 498

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 131/374 (35%), Gaps = 34/374 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q +AI  +            +     G+GKT    + +   +             
Sbjct: 40  KPTPIQAAAIPVVTAGHDV------MGAAQTGTGKTAGFSLPIIHNLLPDANTSASPARH 93

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q Y+ + KY + T +   ++ G +    + + L R       I++
Sbjct: 94  PVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRR----GVEILV 149

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  V          R+           ++       +TL+ ++ 
Sbjct: 150 ATPGRLLDHVQQRSVNLSQV-RMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSAT 208

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
              +I ++        P    +   N   E + ++   + +  K   +   + ++ E   
Sbjct: 209 FSPEIKRLAASYLRH-PQTIEVARSNATAENVRQVIYTVPDNHKQAALVHLLRQRAEQGL 267

Query: 499 --------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   N +    R     E    +   IHG  +  ++   +++FK GT  +L+AT V
Sbjct: 268 PRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGTVDVLVATDV 327

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+     +I  +        +H++ GR GR       + L+ P   +       +
Sbjct: 328 AARGLDISQMPCVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLFAPGDERLLADIEKL 386

Query: 611 LKNTEDGFLIAEED 624
           +K       +A+ D
Sbjct: 387 IKRNLPREQLADFD 400


>gi|87119807|ref|ZP_01075704.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
 gi|86165283|gb|EAQ66551.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
          Length = 450

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/362 (16%), Positives = 138/362 (38%), Gaps = 38/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
            P+  Q+ AI  IL+     + M        G+GKT    + +   +  G        +A
Sbjct: 23  KPSPIQQQAIPAILE---SNDIMAA---AQTGTGKTAGFTLPLLEILSRGAKANANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  + +  Y Q+  +  +++ G +    +   L +       I++ T  
Sbjct: 77  LVLTPTRELAAQVADSVATYGQHLNLRSDVVFGGVKINPQMMRLRK----GTDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIP 432
              D     +I++ +L ++++DE  R      +   +K           LL +AT     
Sbjct: 133 RLLDLYNQKAIRFDQLEVLVLDEADRMLDMGFIHDIKKVLALLPKRRQNLLFSATFSDDI 192

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R L    + +     ++   A    +K ++ P+++ ++    + +++++  +   +  + 
Sbjct: 193 RQLAKGLMNNPVEVSVSPANAATPTVKHLLHPVDKKEKTALLIHLIVTQDWQQALVFSRT 252

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +       + + +           S A IHG  S   +   +  FKN   ++L+AT +  
Sbjct: 253 KHGANKIVQKLND--------AGISAAAIHGNKSQGARTKALADFKNSDIRILVATDIAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+     ++  +  +     +H++ GR GR       + L              ++K
Sbjct: 305 RGIDIEQLPQVVNFDLPNVAEDYVHRI-GRTGRAGATGKAVSLVSADEVDQLKDIERLIK 363

Query: 613 NT 614
             
Sbjct: 364 KL 365


>gi|297579966|ref|ZP_06941893.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
 gi|297535612|gb|EFH74446.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
          Length = 437

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/337 (18%), Positives = 134/337 (39%), Gaps = 30/337 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 44  EPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 97

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E + +      +    + G + +A ++ AL         I++ T     D 
Sbjct: 98  TRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKAEQQNALAENPT----ILVATTGRLFDL 153

Query: 390 IQ----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            Q      ++  +++DE        RL           L +    + +T++ ++    D 
Sbjct: 154 TQSGLSLNRVTTLVLDEAD------RLLDMGFWPQVQALAIQTASVRQTVMCSATFS-DE 206

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 207 LKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 266

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S  ++E+ +  FKNG+ ++LIAT ++  GI +  
Sbjct: 267 AKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATDLLARGIHIEQ 326

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             ++I           +H++ GR  R  +    + L 
Sbjct: 327 LPVVINFELPMHAETYVHRV-GRTARAGQQGIALSLV 362


>gi|332286324|ref|YP_004418235.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
 gi|330430277|gb|AEC21611.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
          Length = 477

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 120/340 (35%), Gaps = 28/340 (8%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------Q 323
           PT  Q  AI  ++Q          +     G+GKT    + +   +             +
Sbjct: 28  PTPIQAQAIPQVMQG------GDLLAAAQTGTGKTAGFTLPILHRLLQNPAQGRKPGQPR 81

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   L  Q  E ++ Y+++T I   ++ G +    +  AL +       I++ T 
Sbjct: 82  VLILTPTRELTAQVEESVRTYSKHTSIRSMVMFGGVNINPQISALRKP----LDILVATP 137

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D  Q   + L  V+        + L +        +L +   P  R  +L S    
Sbjct: 138 GRLLDHAQQKTVDLSAVEILVLDEADRMLDMGFIRDIRRILALL--PKQRQNLLFSATFS 195

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---- 499
           D  +   K     PI+  +   N   E++E+  V+  +  K   +   I E         
Sbjct: 196 DEIRALSKGVLNDPIEISVARRNTASELVEQSVVLTEQAHKRDLLSHIIRESGWHQVLVF 255

Query: 500 --FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +    R          S A IHG  S   +   +  FK+G   +L+AT +   GID+
Sbjct: 256 TRTKHGANRLAEKLVKDGLSAAAIHGNKSQAARTRALAGFKDGKVAVLVATDIAARGIDI 315

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
                ++     +     +H++ GR GR     S + L  
Sbjct: 316 DQLPHVVNFELPNVPEDYVHRI-GRTGRAGSTGSAMSLVD 354


>gi|325921307|ref|ZP_08183167.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325548274|gb|EGD19268.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 462

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 134/372 (36%), Gaps = 37/372 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q+ AI  +L           +     G+GKT    + +   +    Q        
Sbjct: 23  TPTAIQQQAIPLVLAGHD------LLAGAQTGTGKTAAFGLPLLQHLGTTPQPVNGPRKP 76

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+ P   LA Q ++ ++ Y++  +I   +I G +   ++   L R       ++I  
Sbjct: 77  RALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRR----GVDLLIAC 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D I+   + L  ++        + L +    +   +L        +TL+ ++  +
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFE 192

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
            +I ++      R P++  + P N + E I      +   +K   +   + +        
Sbjct: 193 ENIKQLA-LEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLV 251

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   ++     E      A IHG  S   +   +  FK G   +L+AT +   GID
Sbjct: 252 FARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           + +   +I  +        +H++ GR GR       I L     +K     + +L     
Sbjct: 312 INELPKVINYDLPMVAEDYVHRI-GRTGRNGSTGEAISLVAQDEAKLLRQIVRMLG---- 366

Query: 617 GFLIAEEDLKQR 628
                  D++ R
Sbjct: 367 ------RDVEIR 372


>gi|304409763|ref|ZP_07391383.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307304119|ref|ZP_07583872.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304352281|gb|EFM16679.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913017|gb|EFN43440.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 451

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 135/388 (34%), Gaps = 42/388 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ ++ Q I       PT  QE A+   L           +     GSGKTL  L+  
Sbjct: 6   FSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKD------LMASSKTGSGKTLAFLLPA 59

Query: 315 AAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              V       +   + +I+ P   LA Q Y  ++    NTQ     + G      + KA
Sbjct: 60  LQRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKAT 419
           L +    + H I+ T     D ++   L        +L   D     G   +LK    A 
Sbjct: 120 LAK----EPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAA 175

Query: 420 AP---HVLLMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  L+ +AT        +  T L +     I    +    I   I   + +D    
Sbjct: 176 DHKRRQTLMFSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEA 235

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L  +L +      I            R   ER  +       + A + G +    +  +
Sbjct: 236 LLARLLKDETHKQVIIFT-------ATRPDTERLAAKLIEQGFATAALSGDLKQAARNQI 288

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           MD F  G  ++L+ T V   G+D+++ S+++  +   F    +H++ GR GR       I
Sbjct: 289 MDQFARGQQQVLVTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRI-GRTGRAGAKGDAI 347

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            L  P    N       L+ T   F I+
Sbjct: 348 SLVGPKDWDNFKKVQVFLRKT---FEIS 372


>gi|195330738|ref|XP_002032060.1| GM23722 [Drosophila sechellia]
 gi|194121003|gb|EDW43046.1| GM23722 [Drosophila sechellia]
          Length = 399

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 140/387 (36%), Gaps = 33/387 (8%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            +N++ ++ + I       P+  Q+ +I  I++          I Q   G+GKT    I+
Sbjct: 30  AMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDV------IAQAQSGTGKTATFSIS 83

Query: 314 MAAAVEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           +  +++      Q + ++P   LA Q  + I        +   +  G        + L+ 
Sbjct: 84  ILQSLDTTLRETQILCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDY 143

Query: 371 IAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKL--TQKATA 420
                 HI+ GT     D I+           L+L   DE    G ++++         A
Sbjct: 144 GQ----HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 199

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVV 478
             V+L++AT     L +TS    D  +I  K      + IK   + + R +   + L   
Sbjct: 200 TQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL--- 256

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
                  Y      +     N +  V+           +++ +HG M   +++ +M  F+
Sbjct: 257 ----CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 312

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G  ++LI T V   GIDV   S++I  +  +     +H++ GR GR       I     
Sbjct: 313 AGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKS 371

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDL 625
              +             D   +   DL
Sbjct: 372 DDIRILRDIEQYYSTQIDEMPMNVADL 398


>gi|187779626|ref|ZP_02996099.1| hypothetical protein CLOSPO_03222 [Clostridium sporogenes ATCC
           15579]
 gi|187773251|gb|EDU37053.1| hypothetical protein CLOSPO_03222 [Clostridium sporogenes ATCC
           15579]
          Length = 481

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 145/394 (36%), Gaps = 53/394 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           LR + +  P++ Q+  I  IL+D         I++ + GSGKT    I +   +E     
Sbjct: 19  LRKLGYKNPSEVQKQVIPLILKDKD------IIVKSETGSGKTAAFSIPVCEKLELEEKD 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++ P   LA Q  E I       ++    I G  P + +++ L++    + H+++G
Sbjct: 73  PQVLVLTPTRELALQIKEEISNIALYKRLRCTAIFGKQPMSLQKRELKQ----RVHLVVG 128

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I+   L        IL   DE    G   +++   K      +         
Sbjct: 129 TPGRTLDHIERENLNLKKIKYFILDEADEMLNMGFIDQVEAVIKRLPKDRV--------- 179

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++     I  + ++         +         + +    V  EGK  + +  +I 
Sbjct: 180 TMLFSATIPDKIENLCKRYMNNPENININPENITTKTINQCYYEV--EGKNKFSLLQKII 237

Query: 494 EKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            K+         N R  V+      +    +   +HG M   D+   M  FK G  + L+
Sbjct: 238 YKEVVDNSIIFCNTREKVDEILKYMKKEGFNAIALHGGMEQKDRLETMKKFKQGQFQFLV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP------- 599
            T V   GI + + S +I     +   + +H++ GR GR  +    I    P        
Sbjct: 298 CTDVAARGIHIENISHVINYEMPYEKESYVHRI-GRTGRAGKEGVAITFIEPNKVRFLKD 356

Query: 600 -----LSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
                  + S      L+    G  I EE++K R
Sbjct: 357 IEDYIDKEISKREEPSLEEVNKGKKIFEENIKDR 390


>gi|5410326|gb|AAD43033.1| RNA helicase [Homo sapiens]
          Length = 1031

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 147/384 (38%), Gaps = 42/384 (10%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 427

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  + + +  +   + V  + G    + 
Sbjct: 428 LPMFRHIMDQRSLEEGEGPLAVIMTPTRELALQIPKGV-RSFKTLGLRVVCVYGGTGISE 486

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT 415
           +   L+R     A II+ T     D +           ++  V++DE  R          
Sbjct: 487 QIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 542

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                   ++    P  +T++ ++     +  +  +    KPI+  +   + +   +E+ 
Sbjct: 543 M------RIVDNVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQ 595

Query: 476 KVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDI 528
            +V+ E KK   +   +   +E      F    E  + L +    +      +HG +   
Sbjct: 596 VIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 655

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D++S+++ FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR   
Sbjct: 656 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGN 714

Query: 589 ISSCILLYHPPLSKNSYTRLSVLK 612
                       ++ +   +  L+
Sbjct: 715 KGYAYTFITEDQARYAGDIIKALE 738


>gi|24374899|ref|NP_718942.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24349603|gb|AAN56386.1|AE015775_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 409

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/356 (19%), Positives = 124/356 (34%), Gaps = 41/356 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           L  + +  PT  Q  AI  IL       +   +     G+GKT    + +   + A  Q 
Sbjct: 16  LAELGYQQPTPIQVEAIPAIL------TKQDVMAGAQTGTGKTAAFALPILQLLMADNQS 69

Query: 324 --------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                   A+++ P   LA Q  +   KY + T I V I  G +    ++       +  
Sbjct: 70  DHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAV----FNAG 125

Query: 376 AHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLL 425
             ++I T     D ++   L L  +        D     G    ++  L Q       LL
Sbjct: 126 IDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLL 185

Query: 426 MTATPIPRTLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT        +     D  +I   +       I+  +  I+   +      +V S+  
Sbjct: 186 FSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFVSHLVRSKNW 245

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +   I  +         +  V++  +       +    HG +S   +E V+  FK G  +
Sbjct: 246 QQVLIFSRT--------KQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQ 297

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +L+AT V   G+D+ +   +I           +H++ GR GR       I L+   
Sbjct: 298 VLVATDVAARGLDIAELQYVINFELPFIAEDYIHRI-GRTGRAGSAGLAITLFSQE 352


>gi|21230065|ref|NP_635982.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769942|ref|YP_244704.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188993155|ref|YP_001905165.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21111589|gb|AAM39906.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575274|gb|AAY50684.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167734915|emb|CAP53127.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 462

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 134/372 (36%), Gaps = 37/372 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q+ AI  +L           +     G+GKT    + +   +    Q        
Sbjct: 23  TPTAIQQQAIPLVLAGHD------LLAGAQTGTGKTAAFGLPLLQHLGTTPQPVNGPRKP 76

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+ P   LA Q ++ ++ Y++  +I   +I G +   ++  AL R       ++I  
Sbjct: 77  RALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRR----GVDLLIAC 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D I+   + L  ++        + L +    +   +L        +TL+ ++  +
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFE 192

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
            +I ++      R P++  + P N + E I      +   +K   +   + +        
Sbjct: 193 ENIKQLA-LEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLV 251

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   ++     E      A IHG  S   +   +  FK G   +L+AT +   GID
Sbjct: 252 FARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +     +I  +        +H++ GR GR       I L     +K     + +L     
Sbjct: 312 IDQLPKVINYDLPMVAEDYVHRI-GRTGRNGSTGEAISLVAQDEAKLLRQIVRMLG---- 366

Query: 617 GFLIAEEDLKQR 628
                  D++ R
Sbjct: 367 ------RDVEIR 372


>gi|227822942|ref|YP_002826914.1| dead-box ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
 gi|227341943|gb|ACP26161.1| dead-box ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
          Length = 520

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 130/373 (34%), Gaps = 49/373 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q  AI  +L+          I     G+GKT    + M   + A G        +
Sbjct: 34  KPTPIQAQAIPLVLKGHD------LIGLAQTGTGKTAAFGLPMIEKLVADGKRPDPRNIR 87

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   L  Q    +K + + + + V ++ G +    + + L R       I++ T 
Sbjct: 88  ALVLAPTRELVNQIATNLKLFVKKSPLKVGVVVGGVSINKQTEQLAR----GVDILVATP 143

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +            L+L   D+    G    L+   K    +          +TL
Sbjct: 144 GRLLDLVARKAVTLTQGRYLVLDEADQMLDLGFIHDLRKISKLVPKN---------RQTL 194

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+++  +     P+K  + P  +  + +E+    +        I  Q    
Sbjct: 195 LFSATMPKQIAELAGEYLT-DPVKVEVTPPGKAADKVEQYVHFVPGKDLKTTILKQSLTN 253

Query: 496 KES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   E+     +H     A IHG  S   +E  +  F++G  ++L+AT
Sbjct: 254 NPDGLSLVFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKGFRDGEIRVLVAT 313

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+   + +   +      A +H++ GR  R       I    P   +      
Sbjct: 314 DVAARGIDIPGVTHVYNYDLPEVPDAYVHRI-GRTARNGRDGIAIAFCAPDEIRLLRDIE 372

Query: 609 SVLKNTEDGFLIA 621
            ++     G  IA
Sbjct: 373 KLM-----GIQIA 380


>gi|123440819|ref|YP_001004810.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087780|emb|CAL10566.1| cold-shock dead-box protein A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 657

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 133/370 (35%), Gaps = 44/370 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 22  LTDLGYEKPSPIQLECIPHLLNGRDV------LGMAQTGSGKTAAFGLPLLHNIDPSLKA 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       +++
Sbjct: 76  PQVLVLAPTRELAIQVAEALSSFSKHMNGVNVVALYGG----QRYDVQLRALRQGPQVVV 131

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   L Q        L +AT 
Sbjct: 132 GTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTALFSATM 191

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P        V+  + + D ++  L+    +   
Sbjct: 192 PEAIRRITRRFMKEPQEVRIQSSMTTRP-DISQSYWVVDGVRKNDALVRFLEAEDFDAAI 250

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +               + +E   +L     +S A+ +G M+   +E  ++  KNG   +
Sbjct: 251 IFV----------RTKNATLEVAEALERSGYNSAAL-NGDMNQAAREQTLERLKNGRLDI 299

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 300 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVDRRERRLL 358

Query: 605 YTRLSVLKNT 614
                 +K T
Sbjct: 359 QNIERTMKMT 368


>gi|54302107|ref|YP_132100.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46915528|emb|CAG22300.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 623

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 139/371 (37%), Gaps = 38/371 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q ++I  +L        +  + +   G+GKT    + +   V+      QA++MA
Sbjct: 28  SPTPIQAASIPLLLTG------VDALGKAQTGTGKTAAFSLPVLNKVDLSQHKPQAIVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN   + V  I G      + +AL       AHI++GT    +
Sbjct: 82  PTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRAL----KNGAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTAT--PIPRTL 435
           D I   +L L  V        DE  + G    +     Q   +   +L +AT  PI + +
Sbjct: 138 DLISRDRLHLDEVSTFVLDEADEMLKMGFVDDVTWIMEQAPASAQRVLFSATMPPIVKQI 197

Query: 436 VLTSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           V   L + +   +    +   +   +  I+     DE +    +   E   A  +  +  
Sbjct: 198 VDRFLRNPERIDVAGENRTVSQVSQQFWIVKGVEKDEAM-IRMLETEENIDASIVFVRT- 255

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R   ER            A +HG +    +E  +D  K G   +L+AT V+  
Sbjct: 256 -------RQDTERLADWLSARGCKAAALHGDIPQSLRERTVDHIKRGVIDVLVATDVVAR 308

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   + +   +      + +H++ GR GR       ILL      +   T   V K+
Sbjct: 309 GLDIQRITHVFNYDIPFDVESYIHRI-GRTGRAGRSGKAILLVRTNQIRMLRTIERVTKS 367

Query: 614 TEDGFLIAEED 624
             +   +   D
Sbjct: 368 RMEEIQLPNRD 378


>gi|15901428|ref|NP_346032.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           TIGR4]
 gi|15903483|ref|NP_359033.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae R6]
 gi|111657434|ref|ZP_01408185.1| hypothetical protein SpneT_02001363 [Streptococcus pneumoniae
           TIGR4]
 gi|116516011|ref|YP_816872.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
 gi|148988638|ref|ZP_01820071.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|148993389|ref|ZP_01822906.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|148997346|ref|ZP_01824951.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|149003176|ref|ZP_01828072.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007498|ref|ZP_01831133.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|168486852|ref|ZP_02711360.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1087-00]
 gi|168488692|ref|ZP_02712891.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae SP195]
 gi|168575216|ref|ZP_02721179.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae MLV-016]
 gi|237650716|ref|ZP_04524968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
           1974]
 gi|237821935|ref|ZP_04597780.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
           1974M2]
 gi|303256042|ref|ZP_07342065.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS455]
 gi|303260214|ref|ZP_07346186.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|303262605|ref|ZP_07348546.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265007|ref|ZP_07350922.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS397]
 gi|303266470|ref|ZP_07352358.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS457]
 gi|303269052|ref|ZP_07354834.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS458]
 gi|307068227|ref|YP_003877193.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
 gi|61223743|sp|P0A4D7|EXP9_STRPN RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
           Full=Exported protein 9
 gi|61223744|sp|P0A4D8|EXP9_STRR6 RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
           Full=Exported protein 9
 gi|14973078|gb|AAK75672.1| putative ATP-dependent RNA helicase [Streptococcus pneumoniae
           TIGR4]
 gi|15459096|gb|AAL00244.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076587|gb|ABJ54307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
 gi|147756401|gb|EDK63442.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|147758636|gb|EDK65633.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760857|gb|EDK67827.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|147925839|gb|EDK76914.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|147927944|gb|EDK78964.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|183570214|gb|EDT90742.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1087-00]
 gi|183572869|gb|EDT93397.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae SP195]
 gi|183578956|gb|EDT99484.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae MLV-016]
 gi|301794592|emb|CBW37036.1| DEAD box helicase family protein [Streptococcus pneumoniae INV104]
 gi|301802300|emb|CBW35052.1| DEAD box helicase family protein [Streptococcus pneumoniae INV200]
 gi|302597002|gb|EFL64125.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS455]
 gi|302636322|gb|EFL66816.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638711|gb|EFL69174.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|302641442|gb|EFL71807.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS458]
 gi|302644048|gb|EFL74307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS457]
 gi|302645526|gb|EFL75758.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS397]
 gi|306409764|gb|ADM85191.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
 gi|332072430|gb|EGI82913.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17570]
 gi|332199626|gb|EGJ13701.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA41317]
 gi|332200146|gb|EGJ14219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47368]
 gi|332201024|gb|EGJ15095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47901]
          Length = 524

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/362 (20%), Positives = 132/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLQDIETLILDEADEMLNMGFLEDIEA-------IISRVPENRQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRS 502
            K       + P    I       E++++  + + E +K   +   ++  +      F  
Sbjct: 188 IKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGR 247

Query: 503 VVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|315049467|ref|XP_003174108.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893]
 gi|311342075|gb|EFR01278.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893]
          Length = 403

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 51  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVLRESQALVLS 104

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + LE       H++ GT     D
Sbjct: 105 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEHGQ----HVVSGTPGRVAD 160

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 161 MIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 211

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 212 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQ 270

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 271 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 330

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 331 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTSE 375


>gi|238758478|ref|ZP_04619655.1| ATP-independent RNA helicase dbpA [Yersinia aldovae ATCC 35236]
 gi|238703382|gb|EEP95922.1| ATP-independent RNA helicase dbpA [Yersinia aldovae ATCC 35236]
          Length = 457

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 87/464 (18%), Positives = 175/464 (37%), Gaps = 68/464 (14%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + ++  T  Q +A+  IL     +       +   GSGKT    I +   +  G   
Sbjct: 16  LNELGYTEMTPVQAAALPAILNGQDVR------AKAKTGSGKTAAFGIGLLDKIAVGEFV 69

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+ P   LA Q  + +++  + TQ I +  + G  P  H+  +L        HI++
Sbjct: 70  TQALILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHA----PHIVV 125

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    Q+ ++   L+L  +        D     G    +      T             
Sbjct: 126 GTPGRIQEHLRKKTLVLDELKILVLDEADRMLDMGFTDAIDDVIAYTPVQ---------R 176

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I +I+ +   R+P+   +   +  +  IE++    +  K+   +   +
Sbjct: 177 QTLLFSATYPAGIERISAR-VQREPLNVEVDDGDE-EPAIEQVLFETTREKRLPLLISVL 234

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              +        N +   +      E    S+  +HG +   D++ V+  F N +C++L+
Sbjct: 235 SHYQPDSCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANHSCRVLV 294

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ D ++++           +H++ GR GR       + L  P     ++ 
Sbjct: 295 ATDVAARGLDIKDLALVVNFELAFDPEVHVHRI-GRTGRAGMSGLAVSLCTPQEMTRAHA 353

Query: 607 RLSVL-------------KNTEDGFLIAEEDL--------KQRKEGEILG--IKQSGMPK 643
               L             ++T          L        K R  G+ILG     +G+  
Sbjct: 354 IEDYLQIKLKWTSAEQISRSTNTMPEPEMVTLCIDGGRKAKIR-PGDILGALTGDAGLTA 412

Query: 644 FLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
             + + ++    + + I +  AK  L Q      ++G++ +  L
Sbjct: 413 ADVGKIDMFPVHAYVAIRKASAKRALQQL-QQGKIKGKNCKARL 455


>gi|225861416|ref|YP_002742925.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230290|ref|ZP_06963971.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255231|ref|ZP_06978817.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503322|ref|YP_003725262.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727400|gb|ACO23251.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238917|gb|ADI70048.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389770|gb|EGE88115.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA04375]
          Length = 524

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/362 (20%), Positives = 132/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLQDIETLILDEADEMLNMGFLEDIEA-------IISRVPENRQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRS 502
            K       + P    I       E++++  + + E +K   +   ++  +      F  
Sbjct: 188 IKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGR 247

Query: 503 VVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|307111380|gb|EFN59614.1| hypothetical protein CHLNCDRAFT_29172 [Chlorella variabilis]
          Length = 402

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 128/350 (36%), Gaps = 34/350 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT---LVALIAMAAAVEAG 321
           +    F  P+  Q+ A+  I Q          I Q   G+GKT    + L  M       
Sbjct: 44  IYQFGFEKPSAIQQRAVLPITQGRDV------IAQAQSGTGKTSLIAITLCQMLDTTLRE 97

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA++++P   LA Q  + I     +  +      G        + LE       HI+ G
Sbjct: 98  VQALVLSPTRELATQTEKNILAIGDHMAVQAHACIGGKSVGDDIRKLEN----GVHIVSG 153

Query: 382 THALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPI 431
           T     D I+           L+L   DE    G ++++    +       V+L++AT  
Sbjct: 154 TPGRVFDMIKRRSLRTRNIKTLVLDEADEMLNKGFKEQIYDIYRYLPPETQVVLVSATLP 213

Query: 432 PRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              L +T     D  +I  K      + IK   + + R +   + L          Y   
Sbjct: 214 HEVLEMTHKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTL 266

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
              +     N +  V+           +++ +HG M   ++E++MD F+ G  ++LI T 
Sbjct: 267 TITQAVIFCNTKRKVDWLTEKMRQNNFTVSAMHGDMPQKEREAIMDEFRKGATRVLITTD 326

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   G+DV   S++I  +  +     +H++ GR GR       I      
Sbjct: 327 VWARGLDVQQVSLVINYDLPNSRELYIHRI-GRSGRFGRKGVAINFVKND 375


>gi|307728119|ref|YP_003905343.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307582654|gb|ADN56052.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 467

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 163/444 (36%), Gaps = 59/444 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 24  LTQLGYVEMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARNFA 77

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    I V  + G  P   +  +LE      AHI++
Sbjct: 78  VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH----GAHIVV 133

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D ++   L L     +++DE  R                  ++       +TL
Sbjct: 134 GTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIA------TVVKQCPKERQTL 187

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I K++++       K V +     +  I +    ++E ++ + +   +   
Sbjct: 188 LFSATYPEGIVKLSQQFLRNP--KEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLNHY 245

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 246 RPVSTIAFCNTKQQCRDLLEVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATD 305

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH-PPLSKNS---- 604
           V   G+D+     +I  +        +H++ GR GR ++    + L     + +      
Sbjct: 306 VAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQEGWALSLASMDEMGRVGGIEQ 364

Query: 605 --------YTRLSVLKNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLIA 647
                   +    +   + +  L   E L+           G++LG    ++G     I 
Sbjct: 365 AQKREVEWHKLSELTATSNEPLLPPMETLQILGGRKEKIRPGDVLGALTGEAGFAGSQIG 424

Query: 648 QPELHDS--LLEIARKDAKHILTQ 669
           +  + +    + + R  A+  + +
Sbjct: 425 KINVTEMSTYVAVERSIAREAVRK 448


>gi|160380699|sp|A7EYW0|DBP3_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp3
          Length = 596

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/379 (22%), Positives = 144/379 (37%), Gaps = 51/379 (13%)

Query: 270 PFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------- 318
           PF     PT  Q +A   +L           I   + GSGKT+   +     +       
Sbjct: 195 PFKDFKAPTPIQAAAWPFLLAGRDV------IGVAETGSGKTMAFAVPCVRYMSSLPKNQ 248

Query: 319 -EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
              G +AV+++P   LA Q YE I K  + + +    + G +P+  + +AL+      A 
Sbjct: 249 KNKGPRAVVVSPTRELAMQSYEQIVKLAKASGLECVCVYGGVPKDEQIRALK-----TAD 303

Query: 378 IIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLL 425
           I++ T     D I        +   ++L   D     G ++ ++     T        L+
Sbjct: 304 IVVATPGRLNDLINQGCADLSKARYVVLDEADRMLDKGFEEEIRKIINTTPSLGKRQTLM 363

Query: 426 MTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVII-------PINRIDEVIERLK 476
            TAT     R L  T +       I + P G     + I+       P ++   +++ LK
Sbjct: 364 FTATWPESVRELASTFMTSPVKIAIGDNPTGDLRANSRIVQKVEVVEPRDKEYRLMQLLK 423

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              S  +K   I      KKE+       R           +A IHG +S   +   +++
Sbjct: 424 QYQSGSQKDDRILVFCLYKKEAT------RVEGFIRQKGFRVAGIHGDLSQEQRTRSLEA 477

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+G   +L+AT V   G+D+    ++I           +H++ GR GR  +    I L+
Sbjct: 478 FKSGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRI-GRTGRAGKDGLAITLF 536

Query: 597 HPPLSKNSYTRLSVLKNTE 615
                  S   ++VLK   
Sbjct: 537 TEHDKAQSGALINVLKAAN 555


>gi|172065244|ref|YP_001815956.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171997486|gb|ACB68403.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 477

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 135/376 (35%), Gaps = 43/376 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGG-------Q 323
           +PT  Q  AI  +L           +     G+GKT    + +    V+ G        +
Sbjct: 23  TPTPVQVKAIPAVLGGKDV------MAGAQTGTGKTAGFALPLLQRLVQQGPAVSSNRAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +    Y +   +      G +    +   L +       +++ T 
Sbjct: 77  VLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMKLRK----GVDVLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++Q+ ++  +++DE  R        L          +  A P+ R  +L 
Sbjct: 133 GRLLDLNRQNAVQFDQVETLVLDEADRM-------LDLGFARELNAVFAALPVQRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +       R P+   + P N     I++  V + +  K       + E    
Sbjct: 186 SATFTDDIRTMAASILRSPVNISVSPPNVTASKIKQWVVTVDKRNKPDLFMHLVAENNWD 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +       R+ V+   ++ +    ++  IHG      +   ++ FK G  ++L+AT V  
Sbjct: 246 HALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ D  ++I  +        +H++ GR GR       + L     +       +++ 
Sbjct: 306 RGLDIDDLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALIG 364

Query: 613 NT-----EDGFLIAEE 623
            T     E GF  AE 
Sbjct: 365 QTLRREEEPGFE-AEH 379


>gi|90413445|ref|ZP_01221437.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90325533|gb|EAS42010.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 626

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 138/371 (37%), Gaps = 38/371 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q ++I  +L        +  + +   G+GKT    + +   V+      QA++MA
Sbjct: 28  SPTPIQAASIPLLLTG------VDALGKAQTGTGKTAAFSLPVLNKVDLSQHKPQAIVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    IK   QN   + V  I G      + +AL       AHI++GT    +
Sbjct: 82  PTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRAL----KNGAHIVVGTPGRVK 137

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTAT--PIPRTL 435
           D I   +L L  V        DE  + G    +     Q   +   +L +AT  PI + +
Sbjct: 138 DLISRDRLHLDEVSTFVLDEADEMLKMGFVDDVTWIMEQAPASAQRVLFSATMPPIVKQI 197

Query: 436 VLTSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           V   L   +   +    +   +   +  I+     DE +    +   E   A  +  +  
Sbjct: 198 VDRFLRSPERIDVAGENRTVSQVSQQFWIVKGVEKDEAM-IRMLETEENIDASIVFVRT- 255

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R   ER            A +HG +    +E  +D  K G   +L+AT V+  
Sbjct: 256 -------RQDTERLADWLSSRGCKAAALHGDIPQSLRERTVDHIKRGVIDVLVATDVVAR 308

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV   + +   +      + +H++ GR GR       ILL      +   T   V K+
Sbjct: 309 GLDVQRITHVFNYDIPFDVESYIHRI-GRTGRAGRSGKAILLVRTNQIRMLRTIERVTKS 367

Query: 614 TEDGFLIAEED 624
             +   +   D
Sbjct: 368 RMEEIQLPNRD 378


>gi|72074252|ref|XP_780035.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 1
           [Strongylocentrotus purpuratus]
 gi|115968722|ref|XP_001179006.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 2
           [Strongylocentrotus purpuratus]
          Length = 883

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 132/366 (36%), Gaps = 44/366 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---------AGGQ 323
           PT  Q       L           +     GSGKTL  L+     +           G  
Sbjct: 132 PTPIQAQGWPVALSGRD------LVGIAATGSGKTLSYLLPSIVHINHQPFLERGVDGPI 185

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +    + ++++I    + G  P+  + + LER       I I T 
Sbjct: 186 ALVLAPTRELAQQVQQVAFAFGRSSKIKSTCVYGGAPKGQQIRDLER----GVEICIATP 241

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++  K        ++L   D     G   Q R  + Q      V + +AT    
Sbjct: 242 GRLIDFLENNKTNLRRCTYVVLDEADRMLDMGFEPQIRKIMEQIRPDRQVQMWSATWPKD 301

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            R L    + D  +  I      A      I  V     +  ++I+ L+ ++ E      
Sbjct: 302 VRNLAEDFIRDYIMVNIGSLTLSANHNILQIIDVCEDSEKDKKLIQLLEEIMQEKDNKTL 361

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +  + +       R   +    +      +   +HG  S  +++ V+  F++G   +L+A
Sbjct: 362 VFCETK-------RRTDDLVRRMRRDGWPA-MCLHGDKSQPERDWVLSEFRDGRAPILVA 413

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +  +     +H++ GR  R     +    +     K +   
Sbjct: 414 TDVASRGLDVTDIKFVINYDYPNSSEDYVHRI-GRTARSTRTGTAYTFFTRNNMKQAADL 472

Query: 608 LSVLKN 613
           ++VL+ 
Sbjct: 473 INVLQE 478


>gi|311696498|gb|ADP99371.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 440

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 132/360 (36%), Gaps = 37/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------GGQAV 325
           +P+  Q  AI  +L           +     G+GKT    + +   +        G +A+
Sbjct: 23  TPSPIQAQAIPAVLSGRDV------MAAAQTGTGKTAGFTLPLLQRLGENPRTGKGPRAL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q ++ +  Y++       ++ G +    +   L +       +++ T   
Sbjct: 77  ILTPTRELAAQVHDSVNLYSKYIPTKAAVVFGGVKINPQMMKLRK----GLDVLVATPGR 132

Query: 386 FQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIPR 433
             D     ++++ ++ ++++DE  R      ++  +K           LL +AT     R
Sbjct: 133 LMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILSLLPAKRQNLLFSATFSNEIR 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL    L +    ++  +    + IK  + P+++  +     K+V         +  +  
Sbjct: 193 TLAEGLLDNPVQVEVAARNTSAENIKQSVYPVDQSQKTALLSKLVRDNSWDQVLVFTRT- 251

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E    + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 252 -------KHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVLVATDIAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++     +     +H++ GR GR  E    + L      K       ++K 
Sbjct: 305 GLDIKQLPQVVNFELPNVPEDYVHRI-GRTGRAGESGHALSLVSADEGKMLAGIERLIKK 363


>gi|295677616|ref|YP_003606140.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295437459|gb|ADG16629.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 518

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 123/346 (35%), Gaps = 29/346 (8%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----A 320
             + ++ PT  Q  AI  +L           +     G+GKT    + +   +      A
Sbjct: 17  NELGYTSPTPIQTQAIPAVLNG------GDLLAGAQTGTGKTAGFTLPILQRLNSMAPAA 70

Query: 321 GG----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
           GG    +A+I+ P   LA Q  E ++ Y +  ++   ++ G +    +  AL+R      
Sbjct: 71  GGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALKR----GV 126

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I++ T     D +Q   + L  + E        R+           +L    P  + L+
Sbjct: 127 DIVVATPGRLLDHMQQKTIDLSHL-EILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLL 185

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I  + +      P    +   N   E + +    +   +K   +   I +  
Sbjct: 186 FSATFSDEIKALADSLLD-SPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIRQHS 244

Query: 497 ESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +    R          S   IHG  S   +   +  FK+GT ++L+AT +
Sbjct: 245 WFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDI 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
              GID+     ++  +  +     +H++ GR GR       + L 
Sbjct: 305 AARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLV 349


>gi|262164692|ref|ZP_06032430.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
 gi|262027072|gb|EEY45739.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
          Length = 430

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/337 (19%), Positives = 131/337 (38%), Gaps = 30/337 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 40  QPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 93

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +        +    + G + +A ++ AL        +I++ T     D 
Sbjct: 94  TRELAMQVSEVLTHVGTPLGLNTLCLCGGVDKAEQQNALAE----NPNILVATTGRLFDL 149

Query: 390 IQ----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            Q      ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 150 TQSGLSLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTASVRQTVMCSATFSDD 202

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +     P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 203 LKLKAQQLMHAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 262

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S  ++E+ +  FKNG+ ++LIAT ++  GI +  
Sbjct: 263 AKENADSLTKKLNKAGVVATALHGDKSQTEREAALAEFKNGSTQVLIATDLLARGIHIEQ 322

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             ++I           +H++ GR  R  +    + L 
Sbjct: 323 LPVVINFELPMHAETYVHRV-GRTARAGQQGIALSLV 358


>gi|223993165|ref|XP_002286266.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977581|gb|EED95907.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 480

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 138/389 (35%), Gaps = 49/389 (12%)

Query: 257 VEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
                 QK L++  F  PT  Q  A    +           I     GSGKT   L+   
Sbjct: 52  PFSDSIQKTLKSAGFERPTFIQSQAWPIAING------SDMICVAKTGSGKTCGFLLPSF 105

Query: 316 -------AAVEAGGQA---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
                  A    GG+    +++AP   LA Q  +  +K+ +   I      G  P+  + 
Sbjct: 106 HQYFQSKATANKGGKGPIMLVLAPTRELACQILDETQKFGRPIGIRSVCCYGGSPKYAQI 165

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQ- 416
            ALER        +I T     D I+  K        ++L   D     G + +++    
Sbjct: 166 AALER----GVECVIATPGRLNDLIEMKKANLSNVKFVVLDEADRMLDMGFEPQIRSIMG 221

Query: 417 ---KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG----RKPIKTVIIPINRID 469
               +T    LL +AT       L      D  +I           K I   I+  +  D
Sbjct: 222 SVPDSTNRQTLLFSATWPKEIQRLAFDFLSDPIQINVGEINVLNANKDITQKIMMCSEDD 281

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           ++    +++         +                E  N L +   + +  +HG     +
Sbjct: 282 KIDRLKEILTDLKHSKVIVFV-------GKKYVAHELANQLWDEGFA-VDSLHGDREQWE 333

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE---HFGLAQLHQLRGRVGRG 586
           +  V+++FK GT +LLIAT V   G+DV D  +++  +     +     +H++ GR GR 
Sbjct: 334 RTKVINAFKQGTLRLLIATDVAARGLDVKDVGVVVNYDMPVGVNGAEDYIHRI-GRTGRA 392

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTE 615
                   ++ P   K +   + +L+  E
Sbjct: 393 GAKGIAYTMFTPGDKKLATQLVEILEKAE 421


>gi|302696869|ref|XP_003038113.1| hypothetical protein SCHCODRAFT_63532 [Schizophyllum commune H4-8]
 gi|300111810|gb|EFJ03211.1| hypothetical protein SCHCODRAFT_63532 [Schizophyllum commune H4-8]
          Length = 396

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 130/344 (37%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AI  I Q          I Q   G+GKT    I++  +++      QA++++
Sbjct: 45  KPSAIQQRAILPITQGRDV------IAQAQSGTGKTATFSISILQSIDVTVRETQALVLS 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + LE       H++ GT     D
Sbjct: 99  PTRELATQIQSVVLALGDYMNVQCHACIGGTSVGEDIRKLEYGQ----HVVSGTPGRVFD 154

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G + ++    +            P  + ++L++ 
Sbjct: 155 MIRRRSLRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLP---------PATQVVLLSAT 205

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+ ++T+K     PI+ ++       E I++  V +  E  K   +C   +      
Sbjct: 206 LPYDVLEMTQKFMT-DPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLTITQ 264

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++++M  F+ GT ++LI T V   
Sbjct: 265 AVIFCNTRRKVDWLTEKMRQSNFTVSSMHGEMVQKERDAIMAEFRAGTSRVLITTDVWAR 324

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GIDV   S++I  +        +H++ GR GR       I    
Sbjct: 325 GIDVQQVSLVINYDLPANRENYIHRI-GRSGRFGRKGVAINFVT 367


>gi|289620618|emb|CBI52979.1| unnamed protein product [Sordaria macrospora]
          Length = 1190

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/392 (19%), Positives = 140/392 (35%), Gaps = 47/392 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------ 318
           + ++ +  PT  Q  A+  I+           I     GSGKT+   + +   V      
Sbjct: 570 IESLGYEKPTPIQMQALPVIMSGRDV------IGVAKTGSGKTMAFALPLLRHVKDQDPV 623

Query: 319 --EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
             + G  A+IM P   L  Q Y  ++ + +  ++ V    G      +   L+R     A
Sbjct: 624 TGDDGAIALIMTPTRELCTQIYSDLQPFAKALKLRVVAAYGGNAIKDQIAELKR----GA 679

Query: 377 HIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            II+ T     D +           +   +++DE  R           K           
Sbjct: 680 EIIVATPGRLIDLLAANGGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVR----- 734

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  +T++ ++     I  +T+K   R P++  +   + +   I ++  V+ EGKK   +
Sbjct: 735 -PDRQTILFSATMPRIIDSLTKK-VLRDPVEITVGGRSVVAPEITQIVEVMDEGKKFNRL 792

Query: 489 CPQIEEKKESNFR-------SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
              + E    +            E+ + L             IHG     D+ S +  FK
Sbjct: 793 LELLGELYADDDDVRSLIFVERQEKADDLLRELLRRGYGCMSIHGGKDQEDRNSTISDFK 852

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G C +LIAT++   G+DV    ++I  +A +     +H+  GR GR     + +     
Sbjct: 853 KGVCPILIATSIAARGLDVKQLKLVINYDAPNHLEDYVHR-AGRTGRAGNTGTAVTFITE 911

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
                +      L+    G  + +   + RK 
Sbjct: 912 EQENCASGIAKALEQ--SGQPVPDRLNEMRKA 941


>gi|238878985|gb|EEQ42623.1| eukaryotic initiation factor 4A-12 [Candida albicans WO-1]
          Length = 399

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/395 (21%), Positives = 138/395 (34%), Gaps = 42/395 (10%)

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           E        + + + F+     P  ++G  A          P+  Q  AI  I+      
Sbjct: 13  EFSHKSTKGIKVHRTFESMNLKPDLLKGIYAYGFEA-----PSAIQSRAIMQIISGRDT- 66

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNT 348
                I Q   G+GKT    I M   ++      QA+I++P   LA Q    +K      
Sbjct: 67  -----IAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYM 121

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIV 400
            I      G        K L++       I+ GT     D I+   L        IL   
Sbjct: 122 NIHTHACIGGKNVGEDVKKLQQGQ----QIVSGTPGRVIDVIKRRNLQTRNIKVLILDEA 177

Query: 401 DEQHRFGVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEK--PAGRK 456
           DE    G ++++    K    +  V++++AT     L +TS    D  KI  K       
Sbjct: 178 DELFTKGFKEQIYEIYKHLPPSVQVVVVSATLPREVLEMTSKFTTDPVKILVKRDEISLS 237

Query: 457 PIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            IK   +   R D   + L  +       +A   C           +  V       +  
Sbjct: 238 GIKQYYVQCEREDWKFDTLCDLYDNLTITQAVIFCNT---------KLKVNWLADQMKKQ 288

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             ++  +HG M   +++S+M+ F+ G  ++LI+T V   GIDV   S++I  +       
Sbjct: 289 NFTVVAMHGDMKQDERDSIMNDFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKEN 348

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
            +H++ GR GR     + I L              
Sbjct: 349 YIHRI-GRSGRFGRKGTAINLITKDDVVTLKELEK 382


>gi|261418549|ref|YP_003252231.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
 gi|297528577|ref|YP_003669852.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
 gi|319765363|ref|YP_004130864.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
 gi|261375006|gb|ACX77749.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
 gi|297251829|gb|ADI25275.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
 gi|317110229|gb|ADU92721.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
          Length = 467

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 135/358 (37%), Gaps = 39/358 (10%)

Query: 259 GKIAQKILRNIPFSPT-KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   K +  + F  T   Q   I   LQ+         I Q   G+GKT    I +   
Sbjct: 10  SQEVMKAIERMGFEETTPIQAKTIPLSLQNKDV------IGQAQTGTGKTAAFGIPIVEK 63

Query: 318 VE--AGG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           V+   G  QA+++AP   LA Q  E + K     ++ V  I G      + +AL++    
Sbjct: 64  VDVKNGAIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKK---- 119

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLM 426
             H+I+GT     D I    L L  V        DE    G  + +           +L 
Sbjct: 120 HPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDI---------EAILS 170

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +TL+ ++     I +I E+    +P    +         I++  + + E KK  
Sbjct: 171 HVPAERQTLLFSATMPDPIRRIAERFMN-EPELVKVKAKEMTVPNIQQYYLEVHEKKKFD 229

Query: 487 WICPQIEEKK---ESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNG 540
            +   ++ +       F     R + L E       +   IHG +S   + SV+  FK G
Sbjct: 230 ILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEG 289

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             ++L+AT V   G+D+   + +   +      + +H++ GR GR  +    +    P
Sbjct: 290 AIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKTGVAMTFVTP 346


>gi|218676922|ref|YP_002395741.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus LGP32]
 gi|218325190|emb|CAV27104.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 468

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 157/445 (35%), Gaps = 62/445 (13%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ ++  T  Q  ++  IL           I QG  GSGKT    + +   +      
Sbjct: 28  LDSLGYTEMTPIQALSLPTILDGKDV------IGQGKTGSGKTAAFGLGVLQNLRVKRFR 81

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 82  VQSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 137

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATP 430
           GT     D ++  +        L+L   D     G Q      +         LL +AT 
Sbjct: 138 GTPGRILDHLERDRIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQTLLFSATF 197

Query: 431 IPRT--LVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
             +   +    + + ++ K+  T   +  +     +      D+ +E + ++  + + A 
Sbjct: 198 PKQIKSVADRIMNNPEMVKVESTHDHSSIQQHFYKVEGTEARDDALELM-LLHHQPESAV 256

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C   +E +  N       F         S+  +HG M   +++  +  F N T  +L+
Sbjct: 257 VFCNTKKEVQNVNDELSHRGF---------SVIELHGDMEQRERDQALVQFSNKTISILV 307

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV +   +            +H++ GR GR       I  +          
Sbjct: 308 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRI-GRTGRAGSKGVAISFFSEKEMHRVAQ 366

Query: 607 RLSVL---------------KNTEDGFLIAEED---LKQRKEGEILG--IKQSGMPKFLI 646
               +               K      +  + D     + + G+ILG    Q G+    +
Sbjct: 367 IDEYMDMPIEPSQLPAKPIAKPYYSNMVTIQIDGGKKAKLRAGDILGALTGQGGIDGKSV 426

Query: 647 AQPELHD--SLLEIARKDAKHILTQ 669
            +  L    + + + R  AK  L +
Sbjct: 427 GKINLFAMRAYVAVERSMAKKALGK 451


>gi|153874150|ref|ZP_02002476.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
 gi|152069386|gb|EDN67524.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
          Length = 441

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 141/381 (37%), Gaps = 42/381 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N+   I + I +    +PT  Q  AI  +L           I   + G+GKT   ++  
Sbjct: 6   FNLHPIILKAIQQCGYTTPTGVQAEAIPKVLNG------SDLIASANTGTGKTAAFVLPA 59

Query: 315 AAAV---------EAGGQ-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
              +         + G    +++ P   LA Q  + I+ Y +N +     + G MP   +
Sbjct: 60  LQRLTNKEHRVKKQNGKPSVLVLTPTRELANQISQAIRNYGKNLRFFSTNLVGGMPYEPQ 119

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKAT 419
            +AL R       I++ T     D ++   + L  V     DE  R      +    K  
Sbjct: 120 LRALSRP----IDIVVATPGRLLDLVERRNIDLSGVNMLVLDEADRMLDMGFVDEVNK-- 173

Query: 420 APHVLLMTATP-IPRTLVLTSLGDIDISKITEKPAGRKPIKTV--IIPINRIDEVIERLK 476
                + + TP   +TL+ ++  D  ++ +  +         V   +  N I++ +    
Sbjct: 174 -----IASFTPETRQTLLFSATWDNTMASLARRLLKDPERIQVESQVTQNNIEQRLHIAD 228

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESV 533
               + +    +    E  +   F +  +  N L +   +   S A +HG M    +   
Sbjct: 229 DFKHKNRLLLHVLDNEELTQAIIFSATKQGANDLAQELKAQGHSAAALHGDMKQGARNRT 288

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           + + + G  +LL+AT V   GIDV   + +I  +   F    +H++ GR GR     + I
Sbjct: 289 LMNLRRGKLRLLVATDVAARGIDVTTVTHVINFDLPRFAEDYVHRI-GRTGRAGAAGTAI 347

Query: 594 LLYHPPLSKNSYTRLSVLKNT 614
               P    ++     + + T
Sbjct: 348 SFALPD---DARHLARIERYT 365


>gi|150025749|ref|YP_001296575.1| DEAD-box ATP dependent DNA helicase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772290|emb|CAL43768.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
           [Flavobacterium psychrophilum JIP02/86]
          Length = 414

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 129/343 (37%), Gaps = 32/343 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---------EAGGQA 324
           T  QE +I  IL           I     G+GKT    I +   +         E   + 
Sbjct: 25  TPIQEQSIPIILAGQD------LIGCAQTGTGKTAAFAIPIIHNLHRIVGSSKKEKLIRT 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E    Y + T +    I G + Q  + + L+        I+I T  
Sbjct: 79  LVVTPTRELAVQIGESFDTYGKYTNLKQLTIFGGVSQNPQVEQLKS----GIDILIATPG 134

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL-LMTATPI-PRTLVLTSLGD 442
              D    +K   + +D  H   + +  ++        V  ++  TP   +TL+ ++   
Sbjct: 135 RLLD---LHKQGFINLDHMHHLVLDEADQMLDMGFINDVKKIVKLTPKNRQTLLFSATMP 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
           I I ++ E      P    + P++   E +++    + +  K   +   I+E+K SN   
Sbjct: 192 IAIRELAEMFLT-DPATVQVAPVSSTIETVDQRLYYVDKADKRQLLYHIIKEEKLSNILV 250

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   +      +    +   IHG  S   ++  +D+FKN  C +L+AT +   GID
Sbjct: 251 FSRTKHGADNIAKALKKQGLNAEAIHGDKSQNARQRALDNFKNKACDILVATDIAARGID 310

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +     +I  +  +     +H++ GR GR       I      
Sbjct: 311 IEFLPYVINFDLPNIPETYVHRI-GRTGRAGREGMAISFCGKD 352


>gi|84684138|ref|ZP_01012040.1| hypothetical protein 1099457000262_RB2654_16856 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667891|gb|EAQ14359.1| hypothetical protein RB2654_16856 [Rhodobacterales bacterium
           HTCC2654]
          Length = 439

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/355 (16%), Positives = 120/355 (33%), Gaps = 26/355 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +P+  Q  AI   L           +     G+GKT    + +   +  G         +
Sbjct: 24  TPSPIQVQAIPHALAG------TDVLGLAQTGTGKTAAFGLPLVQQLLGGHDKREPKGVR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   L  Q  + +  Y + T I V  + G      + + L +       I++ T 
Sbjct: 78  ALVLAPTRELVNQIADNLIAYVKGTHIKVNTVVGGKSINKQVQILAK----GTDILVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    + L            Q L +        +     TP  +T++ ++    
Sbjct: 134 GRLIDLMDRKAVRLDTATFLVLDEADQMLDMGFIHALRRIAPELGTP-RQTMLFSATMPK 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----- 498
            + +++           V  P    D++ + +     +G K   +   + ++ +      
Sbjct: 193 QMEELSRAYLTDPVKVQVAAPGKAADKITQGVHWAQDKGDKIDILKAYLSDEPDGLSLVF 252

Query: 499 -NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ER              IHG  S   ++  + +F++G  ++L+AT V   GID+
Sbjct: 253 ARTKHGAERLMKQLCASGFDAVSIHGNKSQGQRDRALAAFRDGKARVLVATDVAARGIDI 312

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              S +   +  +     +H++ GR  R       I L              ++K
Sbjct: 313 PGVSHVFNFDLPNVAENYVHRI-GRTARAGADGDAISLVTGDELGYLRDIQKLMK 366


>gi|120553901|ref|YP_958252.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120323750|gb|ABM18065.1| ATP-dependent RNA helicase DbpA [Marinobacter aquaeolei VT8]
          Length = 457

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/465 (16%), Positives = 166/465 (35%), Gaps = 66/465 (14%)

Query: 262 AQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
            Q  L  + +  PT  Q  A+   L           I     GSGKT    I +  A++ 
Sbjct: 13  MQANLDQLGYQQPTPVQAEAVPLALAGKDV------IAMAQTGSGKTAAFGIPIIEAIDP 66

Query: 321 G---GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                Q++++ P   LA Q  + +++  +    + V  + G +P   +  +L       A
Sbjct: 67  RCFRVQSLVLCPTRELADQVAKALRELARAKDNVKVLTLCGGVPIGPQIGSL----SHGA 122

Query: 377 HIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           HI++GT     D ++           L+L   D     G ++ +            +  +
Sbjct: 123 HIVVGTPGRVDDHLRKGTLSLDGLKVLVLDEADRMLDMGFEEVVTSI---------VSQS 173

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++     I K++E+   +   + V +        IE     +   ++A  +
Sbjct: 174 PGGRQTLLFSATWPPAIRKLSEQF--QSKPEDVRVESKAATITIEESFYEIQPDQRAAAV 231

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +   +          +   +  +        S   +HG +   +++S +  F N +C
Sbjct: 232 AALLSRFQPVSSLVFCTTKRDCDELSDELGRLGFSALSLHGDLDQRERDSALVRFANQSC 291

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+    ++I            H++ GR GR  E    + L  P    
Sbjct: 292 TVLVATDVAARGLDIKGLPLVINAEPARDPEVHTHRV-GRTGRAGEQGHAVTLCTPRQGH 350

Query: 603 NSYT-------------RLSVLKNTEDGFLIAEEDL-------KQRKEGEILG--IKQSG 640
                              ++L         A + L        + + G+++G    ++G
Sbjct: 351 KITRLEAERGEPVLWGDTEALLAEALRPVTPAMKTLCLAGGRKDKVRPGDVMGALTGEAG 410

Query: 641 MPKFLIAQPELHDS--LLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           +P   + + +L D    + +  + A   L +  +   V+G+  R+
Sbjct: 411 IPGAAVGKIDLFDFQCFVAVESRWASQALARL-EKGKVKGRKFRV 454


>gi|46143724|ref|ZP_00134573.2| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208057|ref|YP_001053282.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae L20]
 gi|190149888|ref|YP_001968413.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303252206|ref|ZP_07338374.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|126096849|gb|ABN73677.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915019|gb|ACE61271.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648989|gb|EFL79177.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 619

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/417 (20%), Positives = 150/417 (35%), Gaps = 40/417 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q+  I  +L           +     GSGKT    + + A ++      Q ++MA
Sbjct: 28  TPSPIQQETIPHLLAGRDV------LGMAQTGSGKTAAFSLPLLAQIDPTKRHPQMLVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  +++T+N   + V  + G      R     R     + +++GT     
Sbjct: 82  PTRELAIQVADACEQFTKNMKGVNVVTVYGG----QRYDIQLRALKQGSQVVVGTPGRIL 137

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIP-RTL 435
           D I+   L        +L   DE  R G    ++  + +        L +AT P P R +
Sbjct: 138 DHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRI 197

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               + D    KI         I      +N   +    L+ +  E   A  I  + +  
Sbjct: 198 TRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTG 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                         L E      A ++G M+   +E  +D  K+G   +L+AT V   GI
Sbjct: 258 TID--------ITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGI 309

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+   S+++  +      + +H++ GR GR       +L   P   +       ++K   
Sbjct: 310 DIERISLVVNFDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPI 368

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE---IARKDAKHILTQ 669
           D   I   ++   K  E    + S   +      E +  LLE    A +D + +   
Sbjct: 369 DEVAIPNHEILMAKRREKFKARVS--KQLEHHDLEKYRELLEDLFTADQDHEELAAA 423


>gi|325291138|ref|YP_004267319.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324966539|gb|ADY57318.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 518

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/352 (22%), Positives = 131/352 (37%), Gaps = 43/352 (12%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA- 324
            ++ F   T  QE  I   +           I Q   G+GKT    I M   +E   +  
Sbjct: 18  ADMGFEEATPIQEKTIPVAMAGRD------IIGQAQTGTGKTAAFAIPMIENLERHAEGI 71

Query: 325 --VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++ P   LA Q  E I K  Q   I  + I G      + +AL      +  II+GT
Sbjct: 72  GGLVVTPTRELAVQVAEEINKIGQFKGIHAQPIYGGQDINRQIRALRN----RPQIIVGT 127

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP 432
                D ++ + + L  V        DE    G  + +   L +       LL +AT   
Sbjct: 128 PGRLMDHMRRHTIRLDHVSMAVLDEADEMLSMGFIEDIESILGEIQHKHQTLLFSATMPQ 187

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
             L L+    ++   I+ K        T            E+  V L E +K   +C  +
Sbjct: 188 SILNLSKRFMLEPEFISIKAKEVTVPNT------------EQYYVELPERQKFDVLCRLL 235

Query: 493 EEKK---ESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           + +       F     R + L+E       S   IHG ++ + ++SV+  FK G   +L+
Sbjct: 236 DIQSPDLAIVFGRTKRRVDELYEALNKRGYSAEGIHGDLTQLRRDSVLRHFKEGVTDILV 295

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT V   G+D+   + I   +      + +H++ GR GR  +    +    P
Sbjct: 296 ATDVAARGLDISGVTHIYNFDIPQDPESYVHRI-GRTGRAGKTGLAVTFVTP 346


>gi|224096586|ref|XP_002310663.1| predicted protein [Populus trichocarpa]
 gi|222853566|gb|EEE91113.1| predicted protein [Populus trichocarpa]
          Length = 407

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 138/371 (37%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+ A+  I++          I Q   G+GKT +  +     V+      QA+I++
Sbjct: 56  KPSAIQQRALMPIIKGRDV------IAQAQSGTGKTSMIALTACQLVDTANREVQALILS 109

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q  + I    +N  I V    G        + LE       H++ GT     D
Sbjct: 110 PTRELAEQTEKVITAIGENINIQVHACIGGKSVGEDIRKLEY----GVHVVSGTPGRVCD 165

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G + ++            V+L++AT     L +T
Sbjct: 166 MIKRRSLRTRAIRVLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEIT 225

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    D  KI  K      + IK   + + + +   E L  +       +A   C     
Sbjct: 226 SKFMTDPVKILVKRDELTLEGIKQFFVAVEKEEWKFETLTDLYDTLTITQAVIFCNT--- 282

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+   +    F  +++ +HG M   +++++M +F+ G  ++LI T V   G
Sbjct: 283 ------KRKVDWLTAKMVEFNFTVSAMHGDMPQRERDAIMSNFRLGETRVLITTDVWARG 336

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S++I  +  +     +H++ GR GR       I        +            
Sbjct: 337 LDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQ 395

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 396 IDEMPMNIGDL 406


>gi|120598117|ref|YP_962691.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146293812|ref|YP_001184236.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120558210|gb|ABM24137.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145565502|gb|ABP76437.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 413

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 131/354 (37%), Gaps = 31/354 (8%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + +S PT  Q  AI  IL       +   +     G+GKT    + +   + A    
Sbjct: 16  ITELGYSLPTPIQSEAIPVILA------KQDVMAGAQTGTGKTAAFALPILHLLMAKNVE 69

Query: 322 --------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                    QA+++ P   LA Q ++   KY +NT I + I  G +    +    +    
Sbjct: 70  QKAERVKTVQALVLVPTRELAVQVHQSFVKYAKNTDIRIGIAYGGVSIDAQVDVFKT--- 126

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
               ++I T     D ++   L L  +     F    R+         + +L       +
Sbjct: 127 -GIDVLIATPGRLLDHLRQGVLNLNQLS-TLVFDEADRMLDMGFMDEINAVLKQVPKDRQ 184

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++  D  I +++ K   R+P    +   N     +E+    +   +K  ++   I 
Sbjct: 185 TLLFSATLDDAIFELS-KSLLREPKLIEVTKRNTTAAQVEQRVYAIDSDRKTEFVSHLIR 243

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +  V+R        +      HG +S   +E V+ +FK G  ++L+A
Sbjct: 244 SNYWHQVLIFSRTKQGVDRLVQQLNKLSIVTHAFHGDLSQGAREKVLQAFKLGNIQVLVA 303

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           T V   G+D+V+   +I           +H++ GR GR       I L+    +
Sbjct: 304 TDVAARGLDIVELKYVINFELPFIAEDYIHRI-GRTGRAGSAGLAITLFSQEDT 356


>gi|302878957|ref|YP_003847521.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302581746|gb|ADL55757.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 546

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/327 (19%), Positives = 132/327 (40%), Gaps = 36/327 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
            PT  QE AI +I+           +     GSGKT   ++     +         G + 
Sbjct: 23  EPTPIQEQAIPEIIAGHD------LMASAQTGSGKTAAFILPALNRLATPSAMPGKGPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LAQQ  +   KY +N +  +  I G MP   + + L         I++ T  
Sbjct: 77  LVLTPTRELAQQVCDAATKYGKNMRFKIISILGGMPYPVQNRLL----SSHVDILVATPG 132

Query: 385 LFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLT 438
              D ++     + +L ++I+DE  R      +   ++       +  ATP   +TL+ +
Sbjct: 133 RLIDHLERGRIDFSRLEMLILDEADRMLDMGFVDDVER-------IAAATPATRQTLLFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV---VLSEGKKAYWICPQIEEK 495
           +  +  +  +  +         V    ++ + + +R+     V  + K    +    E  
Sbjct: 186 ATLEGVVGNLASRLLKTPKRINVSAAKDKHENIEQRMMFADDVAHKNKMLSHLLTDTEVN 245

Query: 496 KESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +   F +     + L +  ++   S+A +HG MS  ++   + + +NG  ++L+AT V  
Sbjct: 246 QALVFTATKRDADGLADQLSAQGHSVAALHGDMSQRERNRTLLNMRNGNVRILVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQL 579
            G+DV   S +I  +   F    +H++
Sbjct: 306 RGLDVRGISHVINFDLPKFAEDYVHRI 332


>gi|254523078|ref|ZP_05135133.1| ATP-independent RNA helicase DbpA [Stenotrophomonas sp. SKA14]
 gi|219720669|gb|EED39194.1| ATP-independent RNA helicase DbpA [Stenotrophomonas sp. SKA14]
          Length = 458

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 88/466 (18%), Positives = 165/466 (35%), Gaps = 57/466 (12%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
               Q  L  + ++  T  Q  ++  IL           I Q   GSGKT    + +  A
Sbjct: 10  SPALQPGLDALGYTTLTPVQAQSLPAILDGRDV------IAQAPTGSGKTAAFGLGLLQA 63

Query: 318 VEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++      QA+++ P   LA Q  + I+K    T I    +   +        L  +   
Sbjct: 64  IDPSLIRVQALVLCPTRELADQVGKQIRKLA--TGIPNLKLLLLVGGVPLGPQLASLEGH 121

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHV--L 424
             H+++GT    Q+  +   L L  V        D     G ++ ++     T      L
Sbjct: 122 DPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAGRTHKDRQSL 181

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKP-IKTVIIPINRIDEVIERLKVVLSEGK 483
           L +AT       +      D  ++T + A + P I+ +   +           ++L    
Sbjct: 182 LFSATFPDSIRAMARDLLRDAVEVTVEGADQAPAIRHLFCEVEPAHRQKALAGLLLKYTP 241

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           ++  +          N R  V+   +  + F  S   +HG M   D+E V+    N +C 
Sbjct: 242 ESAVVF--------CNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCN 293

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+A+ V   G+DV + + +I         +  H++ GR GR       I L        
Sbjct: 294 VLVASDVAARGLDVEELAAVINYELPTDVESYQHRV-GRTGRAGASGLAISLVAGREKSR 352

Query: 604 SYTRLSVLKNTEDGFLI-------------AEEDLKQ-------RKEGEILG--IKQSGM 641
           +    + +    D                 A   L+         + G+ILG     +G+
Sbjct: 353 AEAIEAQMGQPLDWQKTPLATSRPAELPQAAMRTLRIDGGKTDKLRPGDILGALTGDAGL 412

Query: 642 PKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
               I +  +    S + IAR+ A   + +  +   ++G+  R+ +
Sbjct: 413 SSKFIGKIAIFPTRSYVAIAREQANKAVAKL-EAGKIKGRRFRVRM 457


>gi|193669397|ref|XP_001951491.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Acyrthosiphon
           pisum]
          Length = 401

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 135/368 (36%), Gaps = 33/368 (8%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           P+  Q+ AIK +++          I Q   G+GKT    IAM  ++++     Q + ++P
Sbjct: 51  PSAIQQRAIKPMIKGRDV------IAQAQSGTGKTATFSIAMLQSIDSQLRDTQVLCLSP 104

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +      G        + L+       HI+ GT     D 
Sbjct: 105 TRELAVQIQKVVLALGDYLNVQCHACIGGTNLGEDLRKLDFGQ----HIVSGTPGRVFDM 160

Query: 390 IQYY--------KLILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTS 439
           I+           L+L   DE    G ++++    +    A  V+L++AT     L +T+
Sbjct: 161 IRRKALRTRNIKTLVLDEADEMLNKGFKEQIYDVYRFLPPATQVILISATLPHEILEMTN 220

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
               D  +I  K      + IK   + + R +   + L          Y      +    
Sbjct: 221 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVIF 273

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            + +  V+           +++ +HG M   +++++M  F+ G  ++LI T +   GIDV
Sbjct: 274 CSTKRKVDWLTEKMRESNFTVSSMHGDMPQKERDAIMKEFRAGQTRVLITTDIWARGIDV 333

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              S++I  +  +     +H++ GR GR       I        +             D 
Sbjct: 334 QQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDE 392

Query: 618 FLIAEEDL 625
             +   DL
Sbjct: 393 MPMNVADL 400


>gi|153940796|ref|YP_001391035.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str.
           Langeland]
 gi|152936692|gb|ABS42190.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str.
           Langeland]
 gi|295319091|gb|ADF99468.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str.
           230613]
          Length = 481

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/391 (20%), Positives = 145/391 (37%), Gaps = 47/391 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  P++ Q+  I  IL+D         I++ + GSGKT    I +   +E     
Sbjct: 19  LGKLGYKNPSEVQKQVIPLILKDKD------IIVKSETGSGKTAAFSIPVCEKLELEEKD 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++ P   LA Q  E I       ++    I G  P + +++ L++    + H+++G
Sbjct: 73  PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELKQ----RVHLVVG 128

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L        +L   DE    G   Q   + ++     V ++ +  IP
Sbjct: 129 TPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVTMLFSATIP 188

Query: 433 R---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L    + +     I  +      I      +   D+     K++  E      I 
Sbjct: 189 EKIENLCKKYMNNPQNININPENITTDTINQCYYEVEDKDKFSLLQKIIYKEVVDNSIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
               EK +       E   ++ +   +++ + HG M   D+   M  FK G  + L+ T 
Sbjct: 249 CNTREKVD-------EVLKNMKKKGLNAVGL-HGGMEQKDRLETMKKFKEGEFQFLVCTD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GI + + S +I     +   + +H++ GR GR  +    I    P   +       
Sbjct: 301 VAARGIHIENISHVINYEMPYEKESYVHRI-GRTGRAGKEGVAITFIEPNKVRFLRDIED 359

Query: 610 V------------LKNTEDGFLIAEEDLKQR 628
                        L+  + G  I EE++K R
Sbjct: 360 YIEKEIPKRKEPSLEEVDKGKKIFEENIKNR 390


>gi|146308743|ref|YP_001189208.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145576944|gb|ABP86476.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 447

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 135/361 (37%), Gaps = 37/361 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQ------- 323
           +PT  Q  AI  +L+          +     G+GKT    + +   +   G Q       
Sbjct: 23  TPTPVQSQAIPAMLKGRD------LMAAAQTGTGKTAGFALPLLQRLTLEGPQVASNAVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA+Q  +  + Y Q+  +    + G +    +   L +       +++ T 
Sbjct: 77  ALVLVPTRELAEQVLQSFQAYGQHLPLSSYAVYGGVSINPQMMKLRK----GVDVLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++++ +L  +++DE  R        L          L +A P  R  +L 
Sbjct: 133 GRLLDLYRQNAVKFAQLQTLVLDEADRM-------LDLGFARELDELFSALPKRRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D+ +       R P+   + P N   + +++  + + + +K+      ++EK+  
Sbjct: 186 SATFSDVIRQMAGELLRDPVSVEVSPRNAAAKSVKQWLIPVDKKRKSELFLHLLQEKRWG 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R  V++          S   IHG      +   ++ FK G  ++L+AT V  
Sbjct: 246 QVLVFAKTRKGVDQLEQELLAMGVSADSIHGDKPQPSRLRALERFKAGEVQILVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ D  +++  +        +H++ GR GR       + L      +       +++
Sbjct: 306 RGLDIDDLPLVVNLDLPINAEDYVHRI-GRTGRAGSTGEAVSLVCADEVELLAAIERLIR 364

Query: 613 N 613
            
Sbjct: 365 Q 365


>gi|126173892|ref|YP_001050041.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125997097|gb|ABN61172.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 451

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 135/388 (34%), Gaps = 42/388 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ ++ Q I       PT  QE A+   L           +     GSGKTL  L+  
Sbjct: 6   FSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKD------LMASSKTGSGKTLAFLLPA 59

Query: 315 AAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              V       +   + +I+ P   LA Q Y  ++    NTQ     + G      + KA
Sbjct: 60  LQRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKAT 419
           L +    + H I+ T     D ++   L        +L   D     G   +LK    A 
Sbjct: 120 LAK----EPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAA 175

Query: 420 AP---HVLLMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  L+ +AT        +  T L +     I    +    I   I   + +D    
Sbjct: 176 DHKRRQTLMFSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEA 235

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L  +L +      I            R   ER  +       + A + G +    +  +
Sbjct: 236 LLARLLKDETHKQVIIFT-------ATRPDTERLAAKLIEQGFATAALSGDLKQAARNQI 288

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           MD F  G  ++L+ T V   G+D+++ S+++  +   F    +H++ GR GR       I
Sbjct: 289 MDQFARGQQQVLVTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRI-GRTGRAGAKGDAI 347

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            L  P    N       L+ T   F I+
Sbjct: 348 SLVGPKDWDNFKKVQVFLRKT---FEIS 372


>gi|312377148|gb|EFR24056.1| hypothetical protein AND_11649 [Anopheles darlingi]
          Length = 400

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 133/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+ +I+ I++          I Q   G+GKT    I++  +++      Q + ++
Sbjct: 49  KPSAIQQRSIQPIVKGRDV------IAQAQSGTGKTATFSISILQSMDTTLRETQVLCLS 102

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        I      G        + L+       H++ GT     D
Sbjct: 103 PTRELAVQIQKVILALGDFMNIQCHACIGGTNLGEDIRKLDYGQ----HVVSGTPGRVFD 158

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+           L+L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 159 MIKRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 218

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 219 SKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 271

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   +++ +M  F++G  ++LI T V   GID
Sbjct: 272 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRSGQSRVLITTDVWARGID 331

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S++I  +  +     +H++ GR GR       I        +             D
Sbjct: 332 VQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQID 390

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 391 EMPMNVADL 399


>gi|254504723|ref|ZP_05116874.1| DbpA RNA binding domain family [Labrenzia alexandrii DFL-11]
 gi|222440794|gb|EEE47473.1| DbpA RNA binding domain family [Labrenzia alexandrii DFL-11]
          Length = 722

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 93/459 (20%), Positives = 168/459 (36%), Gaps = 61/459 (13%)

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
             I   ++R   K  +   +++   +   + +    + T  QES + +            
Sbjct: 9   LLIGTQVIRSSRKNPMTELMSLAPALKAALAKRGYETLTPVQESVLTEA------PANAD 62

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAG---------GQAVIMAPIGILAQQHYEFIKKYTQ 346
            ++    GSGKT+   +A+A+ +              A+ +AP   LA Q  E +     
Sbjct: 63  LLVSAQTGSGKTVAFGLALASTILGEEETLGKPGAPIALAIAPTRELALQVKEELTWLYG 122

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILV 398
               +     G M     R+ L+R      HI++GT    +D I+   L        +L 
Sbjct: 123 EAGAVTASCVGGMDPRMERRTLDR----GVHIVVGTPGRLRDHIERGALDLSELRAVVLD 178

Query: 399 IVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT-----EK 451
             DE    G ++ L+            L+ +AT       L      D  +++     E+
Sbjct: 179 EADEMLDMGFREDLEFILDAAPENRRTLMFSATVPKPIAELAKRFQKDAVRLSTINAREQ 238

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
                 I   + P  R + +I  L+  L E +KA   C           R  V R  +  
Sbjct: 239 HVDIDYIAHPVAPNERENAIINVLR--LHEAEKAIVFC---------QTREGVSRLTARL 287

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
            +    I  + G +S   + + + + KNGT ++ +AT V   GID+ +  ++I  +    
Sbjct: 288 ANRGFRIVSLSGELSQEQRTAALTAMKNGTARVCVATDVAARGIDLPNLDLVIHADLPTG 347

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT--RLSVLKNTEDGFLIAEEDLKQRK 629
             A LH+  GR GR     +C+L+   P  + +      + +  T  G   ++   + R 
Sbjct: 348 KAALLHR-SGRTGRAGRKGTCVLMVPFPRRRQAERTLHFANITATWKGAPTSD---EIRA 403

Query: 630 EGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
           +            + L+A P L   L E  R  A  +L 
Sbjct: 404 K----------DKERLLADPVLSAELEEEERVIAGELLA 432


>gi|326482079|gb|EGE06089.1| ATP-dependent RNA helicase DED1 [Trichophyton equinum CBS 127.97]
          Length = 680

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 134/374 (35%), Gaps = 47/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----------EAGG 322
           PT  Q+ +I  +   M  ++ M        GSGKT   L  + +            + GG
Sbjct: 224 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQAFQNGPSPAPTQQGG 277

Query: 323 Q------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           Q            ++I+AP   L  Q Y+  +K+   + +   ++ G      + + +ER
Sbjct: 278 QFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIER 337

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLL 425
                  +++ T     D I+  ++ L  +     DE  R          ++      + 
Sbjct: 338 ----GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMP 393

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
             A    +TL+ ++    DI  +  +   +  +   +  +    E I +    + +  K 
Sbjct: 394 PVAG--RQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEYVEDNDKR 450

Query: 486 YWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +   +              + + +  +    +       IHG  +  ++E  ++ F+N
Sbjct: 451 SVLLDILHTHGAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRN 510

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G C +L+AT V   G+D+ + + ++  +        +H++ GR GR          ++  
Sbjct: 511 GRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI-GRTGRAGNTGISTAFFNRG 569

Query: 600 LSKNSYTRLSVLKN 613
                   + +LK 
Sbjct: 570 NRGVVRDLIELLKE 583


>gi|308050678|ref|YP_003914244.1| ATP-dependent RNA helicase CsdA [Ferrimonas balearica DSM 9799]
 gi|307632868|gb|ADN77170.1| ATP-dependent RNA helicase CsdA [Ferrimonas balearica DSM 9799]
          Length = 649

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/343 (18%), Positives = 124/343 (36%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SPT  Q  AI  +L           + +   G+GKT    +   A ++      Q +++A
Sbjct: 27  SPTPIQAQAIPFMLDGHD------ILGEAATGTGKTAAFGLPALAGIDPRQRAAQMLVLA 80

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    ++++      + V  + G  P   + + LER       +++ T     
Sbjct: 81  PTRELAIQVATALEEFAVNMKGMRVTTLYGGQPYGPQLRDLER----GTQVVVATPGRLM 136

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRT--L 435
           D I+   + L  +        DE    G  + ++           + L +AT   +   +
Sbjct: 137 DHIRRGSIELDSIQCCVLDEADEMLNMGFLEDIEWILEHLPDQTQMALFSATMPNQIRRI 196

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D    KI      +  I      ++ ++++    ++  +    A  +  +    
Sbjct: 197 AERFLKDPKHVKIASDRTQKANIVQKAWKVSGLNKLTALERLSETLDYDAMIVFVRT--- 253

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                R+      +   +     A ++G MS   +E  +     G   +LIAT V+  G+
Sbjct: 254 -----RNDTMELANHLNNMGFKAAALNGDMSQQQREHTVAQLHKGKINILIATDVVARGL 308

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           DV   + ++  +      + +H++ GR GR       IL   P
Sbjct: 309 DVPRITHVLNFDLPMDSESYVHRI-GRTGRAGRSGEAILFARP 350


>gi|94990733|ref|YP_598833.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
 gi|94544241|gb|ABF34289.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
          Length = 539

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 126/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +       QA+++AP 
Sbjct: 25  SPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ +   + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   LIL  V        DE    G        +++       LL +AT P P + + + 
Sbjct: 135 KRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  +I  K      ++   + +   ++     +++     +   +  +       
Sbjct: 195 FMKDPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D+ 
Sbjct: 249 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR  +    I    P 
Sbjct: 307 GVTHVYNYDITQDPESYVHRI-GRTGRAGKSGESITFVSPN 346


>gi|83950175|ref|ZP_00958908.1| putative ATP-dependent RNA helicase protein [Roseovarius
           nubinhibens ISM]
 gi|83838074|gb|EAP77370.1| putative ATP-dependent RNA helicase protein [Roseovarius
           nubinhibens ISM]
          Length = 431

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/355 (18%), Positives = 123/355 (34%), Gaps = 27/355 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q  AI   L+          +     G+GKTL   + +   + A          +
Sbjct: 24  EPTPIQNQAIPLALEGHD------ILGLAQTGTGKTLAFGLPLINHLLAEPGKPAPKTAK 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   L  Q  + ++  T  T++ V  + G      +   L R       I++ T 
Sbjct: 78  ALILAPTRELVNQIADSLRNLTDGTRLRVATVVGGQSINRQITFLAR----GTDILVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    + L  V         Q L L        +     TP  +T++ ++    
Sbjct: 134 GRLIDLMDRRAVDLGSVRHLVLDEADQMLDLGFIHALRKIAPRLGTP-RQTMLFSATMPK 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------ 497
            + +++ +     P K  + P  +  + I +    L +  K   +   +    +      
Sbjct: 193 QMEELS-RAYLENPRKVQVSPPGKAADKITQSVHFLEKPAKPSKLREILSRDMDALTLVF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S  +   E+          + A IHG  S   ++  + +F+ G   +L+AT V   GID+
Sbjct: 252 SRTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEINVLVATDVAARGIDI 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              + +I  +        +H++ GR  R       I       +        ++K
Sbjct: 312 PGVAYVINYDLPDVPDNYVHRI-GRTARAGREGEAIAFCSSEEADLLRQIQRLMK 365


>gi|296136685|ref|YP_003643927.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
 gi|295796807|gb|ADG31597.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
          Length = 666

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/434 (19%), Positives = 153/434 (35%), Gaps = 51/434 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q + I  +L           + Q   G+GKT    + + A ++      QA+++A
Sbjct: 29  TPSPIQAATIPPLLAGRDV------LGQAQTGTGKTAAFALPILAKIDCNARHTQALVLA 82

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   +Y  +     V  I G      +  +L+R     AH+++GT     
Sbjct: 83  PTRELAIQVAEAFARYATHLPGFNVLPIYGGQSYVPQLASLKR----GAHVVVGTPGRII 138

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVL 437
           D ++   L L  +        DE  R G    +   L +      V L +AT       +
Sbjct: 139 DHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQVALFSATMPSAIRRI 198

Query: 438 TSLGDIDISKITEKPAGRKPIK-----TVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
                 D  +IT K A            ++  ++++D +   L+V   EG   +      
Sbjct: 199 AQTYLRDPQEITIKAATTTATHIQQRYWMVSGLHKLDALTRILEVEPFEGMIIFA----- 253

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +   E           + A ++G +    +E ++   K+G   +L+AT V  
Sbjct: 254 ------RTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATDVAA 307

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   S ++  +      + +H++ GR GR       IL   P             +
Sbjct: 308 RGLDVERISHVVNYDIPTDTESYVHRI-GRTGRAGRSGDAILFVTPRERHLLRAIERATR 366

Query: 613 NTEDGFLI----AEEDLKQRKEGEILGI--KQSGMPKFL----IAQPELHDSLLEIARKD 662
                  +    A  D +  +  E +    +Q G+  +       + E     +EIA   
Sbjct: 367 QPITQMQLPSTEAVNDSRISRFMERITEAREQEGLEDYQRLVERYEQEFDIPAIEIAAAL 426

Query: 663 AKHILTQDPDLTSV 676
           A+ +    P L   
Sbjct: 427 ARMVQGNKPLLMRP 440


>gi|146413022|ref|XP_001482482.1| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 475

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/368 (18%), Positives = 141/368 (38%), Gaps = 21/368 (5%)

Query: 239 ALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRIL 298
           A   +  + +    + +N+  ++ + I +     PT  Q  AI   L+          I 
Sbjct: 53  ASQDVNSEQQFHTFLELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKD------IIG 106

Query: 299 QGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
               GSGKT    I +  ++   +    A+++AP   LA Q  E          +    I
Sbjct: 107 LAQTGSGKTAAFAIPILQSLWEAQRPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCI 166

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLT 415
            G M    + + L R    + HI++ T     D ++  K   +   +        RL   
Sbjct: 167 VGGMDMMDQARDLMR----KPHILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDM 222

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
               A   +L        T + ++     I+K+ ++ +  +P+K  +    +  + + + 
Sbjct: 223 DFGPALDKILKVIPTKRTTYLFSATMTNKIAKL-QRASLHEPVKVAVSNKYQTADNLVQS 281

Query: 476 KVVLSEGKKAYWICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            +++S+G K  ++   + E         +   +  +R   L      S   +HG+++   
Sbjct: 282 MMLVSDGYKNTFLIHLLNEFMGKSIIVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQ 341

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +   ++ FK+G   +LIAT V   G+D+    ++I  +      A +H++ GR  R  + 
Sbjct: 342 RLGSLNKFKSGKANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRV-GRTARAGKS 400

Query: 590 SSCILLYH 597
              I L  
Sbjct: 401 GKSISLVT 408


>gi|8489871|gb|AAF75791.1|AF271892_1 DEAD box protein P68 [Pisum sativum]
          Length = 622

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 133/373 (35%), Gaps = 37/373 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQA 324
           P+  Q  A+   L           +   + GSGKT    I M              G  A
Sbjct: 141 PSSIQAQAMPIALSGRD------LLGCAETGSGKTAAFTIPMLQHCLVQPPIRRGDGPLA 194

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++AP   LAQQ  + ++ ++++ + +   I+ G      +R  L         I + T 
Sbjct: 195 LVLAPTRELAQQIEKEVQAFSRSLESLKNCIVVGGTNIEKQRSELRA----GVEIAVATP 250

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
             F D +Q           ++L   D     G   Q R  +         LL +AT    
Sbjct: 251 GRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQTLLFSATMPVE 310

Query: 434 TLVLT-----SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
              L      +   + + K++            +    +ID +++ L    S+ +K    
Sbjct: 311 IEALAKEYLANPVQVKVGKVSSPTTNVSQTLVKVSGSEKIDRLLDLLVEEASQAEKCGHR 370

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            P      E   R   E   +L     S++++ HG  S  ++E+ + +F++ +  +L+AT
Sbjct: 371 FPLTIVFVERKTR-CDEVAEALVAQGLSAVSL-HGGHSQNEREAALQNFRSSSTSILVAT 428

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S +I  +        +H++ GR GR          Y            
Sbjct: 429 DVASRGLDVTGVSHVINLDLPKTTEDYIHRI-GRTGRAGSTGIATSFYTDRDMFLVTNIR 487

Query: 609 SVLKNTEDGFLIA 621
             + + E G  +A
Sbjct: 488 KAIADAESGNAVA 500


>gi|85705347|ref|ZP_01036446.1| putative ATP-dependent RNA helicase protein [Roseovarius sp. 217]
 gi|85670220|gb|EAQ25082.1| putative ATP-dependent RNA helicase protein [Roseovarius sp. 217]
          Length = 438

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 129/357 (36%), Gaps = 27/357 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQA----- 324
            PT  Q  AI   L           +     G+GKT+   + +   +  E G  A     
Sbjct: 24  EPTPIQTHAIPHALNGFDV------LGLAQTGTGKTMAFGLPLITRLMEEPGKPAPKTIR 77

Query: 325 -VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA Q  + +    +++ I + ++ G      + K LE+       I++ T 
Sbjct: 78  SLILAPTRELAGQIRDSLLPLVKDSPIKIGLVVGGASINPQIKRLEQ----GIDILVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D I    + L            Q L L        +  + A    +T++ ++    
Sbjct: 134 GRLLDLIDRRAVRLDAARFLVLDEGDQMLDLGFIHALRRIAGLLAA-ERQTMMFSATMPK 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----- 498
            + ++      R P +  + P  +  + + +    +++  K   +   + + K       
Sbjct: 193 QMEELAGSYL-RNPKRVQVSPPGKAADKVTQEVHFIAKASKPDLLIELLGKHKSELALVF 251

Query: 499 -NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++     E    ++A IHG  S   +E  + +F++G  K+L+AT V   G+D+
Sbjct: 252 GRTKHGSDKLAKRLEQAGFAVATIHGNKSQGQRERALKAFRDGQVKILVATDVAARGLDI 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
            D   +      +     +H++ GR  R  +  + I    P           VL  T
Sbjct: 312 PDVKHVYNYELPNVPDNYVHRI-GRTARAGKDGAAIAFCAPDEMGELKDIQKVLGTT 367


>gi|85113073|ref|XP_964459.1| hypothetical protein NCU02803 [Neurospora crassa OR74A]
 gi|74654326|sp|Q7SEL0|PRP28_NEUCR RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp-28
 gi|28926242|gb|EAA35223.1| hypothetical protein NCU02803 [Neurospora crassa OR74A]
          Length = 728

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 133/386 (34%), Gaps = 53/386 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----------EA 320
            PT  Q +AI   LQ          I     GSGKT   L+ +   +             
Sbjct: 315 EPTPIQRAAIPIALQ------ARDLIGVAVTGSGKTAAFLLPLLVYISELPPLTEYNKND 368

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+I+AP   L QQ     KK+       V  I G      +  AL       A II+
Sbjct: 369 GPYALILAPTRELVQQIESEAKKFATPLGFTVVSIVGGHSLEEQAFALRN----GAEIIV 424

Query: 381 GTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRL-------------------KLTQ 416
            T     D ++     + +    I+DE  R   Q                         +
Sbjct: 425 ATPGRLVDCLERRLLVFSQCCYTIMDEADRMIDQGFEEPLTKILDAMPVTNEKPDTDDAE 484

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                   +       +T++ T+     + +I +K   R  I T+      +D V +R++
Sbjct: 485 NPQLMSRYVDGKDRYRQTMMYTATMPPIVERIAKKYLRRPAIVTIGNAGEAVDTVEQRVE 544

Query: 477 VVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            V  E K+   +   +   +         N +   +      +    S   +HG  +   
Sbjct: 545 FVSGEDKRKKRLQEILNSGQFKPPIIVFVNIKRNCDMVARDIKGMGYSAVTLHGSKTQEQ 604

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E+ + S +NG   +L+AT +   GIDV D S+++  N      +  H++ GR GR  + 
Sbjct: 605 REAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRI-GRTGRAGKS 663

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTE 615
              I    P  +   Y    ++  + 
Sbjct: 664 GVAITFLGPEDNDVLYDLRQIISKSS 689


>gi|326796106|ref|YP_004313926.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546870|gb|ADZ92090.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 460

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 87/448 (19%), Positives = 161/448 (35%), Gaps = 60/448 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  QE  + DIL+          + Q   GSGKTL   I +   +       QA+IM P 
Sbjct: 29  TPVQEQCLPDILEGKD------LLAQAQTGSGKTLAFAIGLLLRINPRYFSTQALIMCPT 82

Query: 331 GILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + I++  +    I V  + G MP   +  +LE      AHI++GT     + 
Sbjct: 83  RELADQVAKEIRRVARFMNNIKVLTLCGGMPFGPQIGSLEH----GAHIVVGTPGRLLEH 138

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++   L        +L   D     G     R  + +  +    LL +AT       +++
Sbjct: 139 LRKRTLSLQYLNTLVLDEADRMLDMGFVDSIREVVLETPSTRQTLLFSATYGDNIEEISN 198

Query: 440 LGDIDISKI-TEKPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKK 496
               + S+I  E     KP            +  E     +     ++A   C    + +
Sbjct: 199 EFQNNPSQIQIEVNQDLKPDIKQFFARTEKAQKYETLLDSLAYFGPRQAIVFCNTKADTQ 258

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                      + L+E   S++AI HG +    ++ V+  F N +  +++AT V   GID
Sbjct: 259 A--------VADFLNEQSVSTVAI-HGDLEQKQRDQVLVRFANKSACIMVATDVAARGID 309

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V +  ++I  +         H++ GR GR       +              +     T +
Sbjct: 310 VKEIDLVINFDTTRDIDVHTHRI-GRTGRAGHSGQALSFITDKDDYKLKGIIERFDITPE 368

Query: 617 GFLIAEEDL------------------KQRKEGEILGIKQSGMPKFLIA----QPELHDS 654
              + E  L                   + + G+ILG   +G+     A          +
Sbjct: 369 FIDLPETPLSYSLTPEMATIAFDAGRKNKLRPGDILGALTAGIGLEKSAVGKIDIYDFQA 428

Query: 655 LLEIARKDAKHILTQDPDLTSVRGQSIR 682
            + +  + A+ ++    +   ++G++I+
Sbjct: 429 YVAVEAQQARKVVKSLAN-KKIKGRTIK 455


>gi|256074313|ref|XP_002573470.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658650|emb|CAZ29702.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 875

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 129/376 (34%), Gaps = 47/376 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           SPT  Q       L        ++ I Q   GSGKT   L+      +A        G  
Sbjct: 99  SPTPIQCQGWPVAL----SGRDLVGIAQ--TGSGKTASFLLPAIVHAKAQPSLKRGDGPI 152

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   LAQQ  +  + +  +       + G   +  + +AL +       ++I T 
Sbjct: 153 VLILVPTRELAQQVEKVAEDFCYSAGFKSACLYGGASRTGQAEALGQS----PEVVIATP 208

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D          +   +++DE  R                  ++    P  +TL+ +
Sbjct: 209 GRLLDFLESRHTNMRRCTYLVLDEADRMLDMGFEPSI------RRVVSQVRPDRQTLMWS 262

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-- 496
           +    ++  + E          V       +  I +   +L+E +K   +   +      
Sbjct: 263 ATWPREVKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILNESEKFKRLLSLLNSFDNA 322

Query: 497 -----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   E    L +    + A +HG     +++  +DS       +L+AT V 
Sbjct: 323 RVLVFTETKKRTDELCQKLQDKGFDATA-MHGDKHQKERDRALDS----HISVLVATDVA 377

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D   II  +        +H++ GR GR ++  +    +     + +   + VL
Sbjct: 378 SRGLDINDVRYIINYDYPSQTEDYIHRI-GRTGRSDKKGTAYTFFSAKQPRLARELIEVL 436

Query: 612 KNT-----EDGFLIAE 622
           K       ++ F IAE
Sbjct: 437 KEARQTIPDELFKIAE 452


>gi|171913474|ref|ZP_02928944.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 452

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 135/348 (38%), Gaps = 39/348 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q +AI  ++      + M+ I Q   G+GKT    + M   +          G +
Sbjct: 23  EPTPIQAAAIPQVVAG----HDMIGIAQ--TGTGKTAAFTLPMLHLLAQLHGQGPLRGIK 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   L  Q ++ ++ Y ++  + V +I G + +  + +AL         ++I T 
Sbjct: 77  ALILAPTRELVAQIHDNVRAYAKHLPLKVAMIFGGVGERPQIEALRA----GTDLVIATP 132

Query: 384 ALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVL 437
               D +      +  L  +++DE  R      L   ++       ++ A P   +TL+ 
Sbjct: 133 GRLIDLMGQRHGNFNSLEFLVLDEADRMLDMGFLPSIKR-------IVKALPKKRQTLLF 185

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I  +T +     P    I   +   E + +    + +  K   +   +++   
Sbjct: 186 SATLSKEIEALTHEFLNH-PKTVQIGKRSNPAESVTQFVYEVPKHLKPALLVHLLKDPAF 244

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +        +   +R     + +      +H   +   +   +  FK+G  ++L+AT + 
Sbjct: 245 NMVLVFSRMKHGADRIARHLDRYGIKTVTLHSNRTQNQRLRALADFKSGAARVLVATDIA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             GIDV   S ++  +        +H++ GR GR   +   I    P 
Sbjct: 305 ARGIDVDGISHVVNYDFPMHAEDYVHRI-GRTGRAHAVGDAISFISPE 351


>gi|148263694|ref|YP_001230400.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146397194|gb|ABQ25827.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 447

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 131/358 (36%), Gaps = 34/358 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ----AVIM 327
           SPT  Q  AI  ++        ++ + Q   G+GKT    + +   +  G Q    A+I+
Sbjct: 23  SPTPIQAQAIPPVM----LGRDVMGLAQ--TGTGKTAAFALPILHRLMQGKQGHVRALIV 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA+Q +E I    + T++    + G +    + + L+        I++       
Sbjct: 77  APTRELAEQIHESISALGRQTRLRSITVYGGVNINPQIQKLKS----GVEIVVACPGRLL 132

Query: 388 DSI--------QYYKLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           D I        +   L+L   D+    G     R  L         LL +AT       L
Sbjct: 133 DHIGQGTIDVSRVEVLVLDEADQMFDMGFFPDIRRILKHLPKQRQTLLFSATMPDEIRRL 192

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE-RLKVVLSEGKKAYWICPQIEEKK 496
                 D   +  +     P  TV   +  +++ ++  L + L        +        
Sbjct: 193 AHEVLNDPVTV--QVGNTAPPVTVSHALYPVEQHLKTPLLLELLRHTDTESVLVFTRT-- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   +R     E      A + G +S   +++ +D F++GT ++L+AT +   GID
Sbjct: 249 ----KHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGID 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           V   S ++  +      A +H++ GR GR         L     +         LK++
Sbjct: 305 VSQISHVVNYDIPDTAEAYVHRI-GRTGRAARSGDAFTLVTSEDTAMVRAIERALKSS 361


>gi|261416325|ref|YP_003250008.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372781|gb|ACX75526.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 802

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/361 (19%), Positives = 144/361 (39%), Gaps = 35/361 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMA 328
           +P+  Q  AI  +LQ          +     G+GKT    + + + +   G+    +++ 
Sbjct: 146 TPSPIQAKAIPALLQG------ANLLGTAQTGTGKTAAFSLPLLSRINFNGRETSMLVLT 199

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I++Y  +   + V  + G    A + +AL+R    +A I++ T     
Sbjct: 200 PTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRALKR----KASIVVATPGRLI 255

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTL 435
           D I+           ++L   DE    G  + +   L +        L +AT     + +
Sbjct: 256 DHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQRALFSATMPDSVKKI 315

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           +   LG+ + ++I  K    + I    + +    ++    +V+  E      I  + +  
Sbjct: 316 IDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIEALARVLEGEEFDGVLIFVRTK-- 373

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E    L E    ++A ++G ++   +E  ++  K G   +++AT V   GI
Sbjct: 374 -----QNTTEVAEKL-ESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDVAARGI 427

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S+++  +  +   + +H++ GR GR     + IL   P   +   T     +   
Sbjct: 428 DVDRISLVVNYDIPYDTESYVHRI-GRTGRAGRSGNAILFITPREKRMLKTIEKATRQPI 486

Query: 616 D 616
           D
Sbjct: 487 D 487


>gi|54026656|ref|YP_120898.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
 gi|54018164|dbj|BAD59534.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
          Length = 602

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/382 (19%), Positives = 139/382 (36%), Gaps = 35/382 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + ++ +I + I      SP+  Q + I  +L           +     G+GKT    I +
Sbjct: 34  LGIDDRILRAIADVGYESPSPIQAATIPPLLDG------ADVVGLAQTGTGKTAAFAIPI 87

Query: 315 AAAVE-AGGQ--AVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALER 370
              +E  G Q  A+++AP   LA Q  E   +Y  +   + V  I G      +   L R
Sbjct: 88  LMGLEVTGRQPRALVLAPTRELAIQVAEAFGRYAAHMPGLHVLPIYGGQSYGVQLSGLRR 147

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATA 420
                AH+++GT     D ++   L        +L   DE  + G Q+ +   L      
Sbjct: 148 ----GAHVVVGTPGRVIDHLEKGTLDLSQLQYLVLDEADEMLKMGFQEDVERILADTPRE 203

Query: 421 PHVLLMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
             V L +AT     R +    L +     +  K      I    + ++   ++    +V+
Sbjct: 204 KQVALFSATMPAAIRKISKQYLREPVEITVKAKTQTNTNITQRWVQVSHQRKLDALTRVL 263

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
             E  +A  I  +         +   E           S A I+G ++   +E  +   K
Sbjct: 264 EVEPFEAMIIFVRT--------KQGTEELAEKLRARGFSAAAINGDIAQNQRERTIGQLK 315

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L+AT V   G+DV   S ++  +  H   + +H++ GR GR       +L   P
Sbjct: 316 SGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRI-GRTGRAGRSGQALLFVAP 374

Query: 599 PLSKNSYTRLSVLKNTEDGFLI 620
                        ++  +   +
Sbjct: 375 RERHLLKAIERATRHPLEEMQL 396


>gi|303271803|ref|XP_003055263.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463237|gb|EEH60515.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 394

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 136/372 (36%), Gaps = 39/372 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ A+  I            I Q   G+GK+ +  +A+   ++      QA++++
Sbjct: 43  KPSAIQQRAVMPICSGRDV------IAQAQSGTGKSSMISLALCQMLDTSTREVQALVLS 96

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  +          + V    G        + L        HI+ GT     D
Sbjct: 97  PTRELATQTEKVALALGNFMSVQVHACIGGRSIGEDIRKL----DHGVHIVSGTPGRVFD 152

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        IL   DE    G ++++    +            P  + +++++ 
Sbjct: 153 MIKRRNLRTRNIKTLILDEADEMLNKGFKEQIYDVYRYLP---------PETQVVLVSAT 203

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
             +++ ++T K     PI+ ++       E I++  V +  E  K   +C   +      
Sbjct: 204 LPVEVLEMTTKFMT-DPIRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQ 262

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N +  V+           +++ +HG M   +++++M  F+ GT ++LI T V   
Sbjct: 263 AVIFCNTKRKVDWLTEKMRANNFTVSAMHGDMPQKERDAIMGEFRGGTTRVLITTDVWAR 322

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GIDV   S++I  +  +     +H++ GR GR       I        +           
Sbjct: 323 GIDVQQVSLVINYDLPNNRENYIHRI-GRSGRYGRKGVAINFVKADDVRILRDIEQYYST 381

Query: 614 TEDGFLIAEEDL 625
             D   +   DL
Sbjct: 382 QIDEMPMNVADL 393


>gi|196014693|ref|XP_002117205.1| DEAD box ATP-dependent RNA helicase [Trichoplax adhaerens]
 gi|190580170|gb|EDV20255.1| DEAD box ATP-dependent RNA helicase [Trichoplax adhaerens]
          Length = 401

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 129/345 (37%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ +IK I++          I Q   G+GKT    I++  A++      QA+IM+
Sbjct: 50  KPSAIQQRSIKPIIEGRDV------IAQAQSGTGKTATFSISVLQAIDTQLRETQALIMS 103

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        +      G        + L+       HI+ G+     D
Sbjct: 104 PTRELAVQIQKVILALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HIVSGSPGRVFD 159

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + ++L++ 
Sbjct: 160 MIRRRNLRTRSIKMLVLDEADEMLNQGFKEQIYDVYRYLP---------PSTQVVLLSAT 210

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
              DI ++T K         V      ++ + +    V  E  K   +C   +       
Sbjct: 211 LPHDILEMTRKFMTEPMRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA 270

Query: 497 --ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +  V+           +++ +HG M   +++++M  F++G  ++LI T V   G
Sbjct: 271 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGASRVLITTDVWARG 330

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           IDV   S++I  +  +     +H++ GR GR       I      
Sbjct: 331 IDVQQVSLVINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKSD 374


>gi|200389990|ref|ZP_03216601.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199602435|gb|EDZ00981.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 457

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 167/458 (36%), Gaps = 58/458 (12%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVTLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKETVSLDAL-HILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   ++PI+  I  ++ +   IE+     S  +K   +   + + +    
Sbjct: 187 WPEAIAAISGR-VQQQPIRIEIDTVDALP-AIEQQFFETSAHEKISLLQTLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   E           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCEAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+  
Sbjct: 305 LDIKSLELVVNYELAWDPEVHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQLK 363

Query: 615 EDGF-LIAEEDL------------------KQRKEGEILGIKQSGMPKFLIAQP------ 649
            +     A + L                  K R  G+ILG   +G      A        
Sbjct: 364 LNWLNAPARQSLLPLAAEMATLCIDGGKKAKMR-PGDILGAL-TGDIGLDGADIGKINVH 421

Query: 650 --ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
              ++ ++ +   + A   L        ++G+S R+ L
Sbjct: 422 PMHVYVAVRQAVAQKAWKQLQN----GKIKGKSCRVRL 455


>gi|119718818|ref|YP_925783.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119539479|gb|ABL84096.1| ATP-dependent RNA helicase CsdA [Nocardioides sp. JS614]
          Length = 589

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 133/350 (38%), Gaps = 36/350 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L ++ +  P+  Q + I  +L           +     G+GKT    + + + ++     
Sbjct: 29  LADVGYEKPSAIQAATIPPLLAGRDV------VGLAQTGTGKTAAFALPILSRLDLTQTT 82

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++AP   LA Q  E  ++Y  +   + V  + G      +  AL R      H+++
Sbjct: 83  PQALVLAPTRELALQVCEAFERYAAHVKGVHVLPVYGGQGYGVQLSALRR----GVHVVV 138

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++           L+L   DE    G  + +   L       +V L +AT 
Sbjct: 139 GTPGRIMDHLEKGTLDLSELRFLVLDEADEMLNMGFAEDVETILADTPDDKNVALFSATM 198

Query: 431 IPRTLVLTSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
             +   ++     D ++IT K   A    I    + ++   +V    +++  E  +   +
Sbjct: 199 PAQIRRISKKYLDDPAEITVKGKTATASNITQRYLTVSYPQKVDALTRILEVENFEGMIV 258

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +         ++  E           S   I+G ++   +E  ++  K+G   +L+AT
Sbjct: 259 FVRT--------KNETETLAEKLRARGLSAMAINGDVAQAQRERTVNQLKSGKLDILVAT 310

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+DV   S ++  +      + +H++ GR GR       I    P
Sbjct: 311 DVAARGLDVERISHVVNYDIPTDTESYVHRI-GRTGRAGRSGDAISFVTP 359


>gi|169829741|ref|YP_001699899.1| ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus C3-41]
 gi|168994229|gb|ACA41769.1| Probable ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus
           C3-41]
          Length = 508

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/348 (21%), Positives = 130/348 (37%), Gaps = 35/348 (10%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
           + + F   T  QE  I+  ++          + Q   G+GKT    I +   ++      
Sbjct: 18  KRMGFEEATPIQEGTIRFAIEGRDV------LGQAQTGTGKTAAFGIPLIEKIDPKNPNI 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+++AP   LA Q  E + K   + ++ +  + G      + +AL      +  II+GT
Sbjct: 72  QALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRAL----KNRPQIIVGT 127

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP 432
                D I    L L  V        DE    G    +   L    +    LL +AT  P
Sbjct: 128 PGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINAILENVPSERQTLLFSATMPP 187

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             R +  T + D +I KI  K      I    +     ++     +++     +   I  
Sbjct: 188 AIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLNVHQPELAIIFG 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           + +       R V E   +L      +  I HG +S   + SV+  FK     +L+AT V
Sbjct: 248 RTK-------RRVDELAQALSIRGYLAEGI-HGDLSQAKRISVLRQFKENKIDILVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+   + +   +      + +H++ GR GR  +    +    P
Sbjct: 300 AARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKSGLAVTFVTP 346


>gi|108760847|ref|YP_634735.1| ATP-dependent RNA helicase DbpA [Myxococcus xanthus DK 1622]
 gi|108464727|gb|ABF89912.1| ATP-independent RNA helicase DbpA [Myxococcus xanthus DK 1622]
          Length = 461

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 85/454 (18%), Positives = 170/454 (37%), Gaps = 63/454 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  Q  +I  +LQ          + Q   GSGKT    + +   V+      QA+++ P 
Sbjct: 25  TPIQAQSIPVLLQGRD------LVGQAQTGSGKTAAFALPLLQKVQLQHRKVQALVLCPT 78

Query: 331 GILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             L  Q    I++  +    + V ++ G  P   + +ALE+     AH+ +GT     D 
Sbjct: 79  RELCAQVAGEIRRLGRRLPGLQVLVLAGGQPIRPQLEALEK----GAHLAVGTPGRVMDV 134

Query: 390 IQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +        +L  V++DE  R                  +L    P  +T++ ++    D
Sbjct: 135 LDREALETRQLSTVVLDEADRM------LDMGFREDMERILGAMPPRRQTVLFSATFPPD 188

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFR 501
           I  ++     +    TV       D  I++++     G K   +   +   +      F 
Sbjct: 189 IEALSRDFQRQPVRVTVEAATAGPD--IQQVRYDCEPGDKQALLLRILRHYQPASAIVFC 246

Query: 502 SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           ++      L +  ++S   +  + G +   +++ VM  F+N + ++LIAT V   GIDV 
Sbjct: 247 NLKATVVELKKSLSASGVSVDGLQGDLEQFERDRVMAKFRNQSTRVLIATDVAGRGIDVE 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-------------------- 598
               +I  +        +H++ GR GR       + +  P                    
Sbjct: 307 ALDAVINFDLPMQAEPYVHRI-GRTGRAGRAGLAVSIVTPRDGRKVDDIQLATGVKLERG 365

Query: 599 ---PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGI---KQSGMPKFLIAQPEL- 651
               L          L++T D   I+     + + G+ILG    +  G+    + + E+ 
Sbjct: 366 DVESLPSADPRNAVSLESTWDTLYISAGRKDKMRPGDILGALTGEAGGLEATDVGKIEIQ 425

Query: 652 -HDSLLEIARKDAKHILTQDPDLTSVRGQSIRIL 684
            H + + +AR+ ++    +  +   ++G+  +I 
Sbjct: 426 DHVAYVAVARRVSRVAFQRLSE-GRIKGRRYKIE 458


>gi|328766962|gb|EGF77014.1| hypothetical protein BATDEDRAFT_645 [Batrachochytrium dendrobatidis
           JAM81]
          Length = 589

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 93/526 (17%), Positives = 177/526 (33%), Gaps = 69/526 (13%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF 271
           P +  +       ++R+  D      I +  +R     E      +   + + I R + +
Sbjct: 27  PPELANMTAEEVDQKRIDLDG-----IKIRGVRCPKPIEKWTHFGMPPGVLEVIRRVLKY 81

Query: 272 S-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GG 322
             P+  Q  AI  I+           I     GSGKT+  L+ M   ++         G 
Sbjct: 82  DRPSSIQSQAIPAIVGGRDV------IGIAKTGSGKTIAFLLPMFRHIKDQRPIQAMEGS 135

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+IM P   LA Q +   K +T+   +      G  P   +   L+R     A III T
Sbjct: 136 IALIMTPTRELAVQIHRECKHFTKILNLRAVCCYGGSPIKDQIAELKR----GAEIIICT 191

Query: 383 HALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D +           ++  +++DE  R           K            P  +T
Sbjct: 192 PGRMIDLLCSNAGRVTNLRRVTYLVLDEADRMFDMGFEPQVMKMVNNIR------PDRQT 245

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     +  +  K   R    TV        +V + ++V   +  K   +   +  
Sbjct: 246 VLFSATFPRKMEALARKILRRPLEITVGGRSVVASDVTQIVEVHHDDETKFLRLLEILGL 305

Query: 495 KKESNFR-------SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKL 544
              ++            E  +S+             +HG     D++S +  FK G+  +
Sbjct: 306 SSATDPDAKILIFVDRQEAADSMLNKLLRRGYPCQSLHGGKDQADRDSTLSDFKTGSTNI 365

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----- 599
           +IAT+V   G+DV    I++     +     +H++ GR GR     +      P      
Sbjct: 366 MIATSVAARGLDVKQLKIVVNYECPNHMEDYVHRV-GRTGRAGNKGTAYTFILPEQDRFA 424

Query: 600 ------LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
                 L+ +     S L+   D F      +++ K G +     SG     + Q +   
Sbjct: 425 LDIVKALTMSGVEVPSSLQELTDRF------MEKIKAGSMQYNS-SGFGGRGLEQLDKER 477

Query: 654 SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
            L++  +K  K ++  + ++     Q I +     +       I  
Sbjct: 478 DLVKRIQK--KSLVGGEYEIEDDEEQQIMLDDDDDENTGKGDLISG 521


>gi|302891875|ref|XP_003044819.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256725744|gb|EEU39106.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 551

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/366 (19%), Positives = 140/366 (38%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       L           +   + GSGKTL   +     + A        G  
Sbjct: 158 APTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPSIVHINAQPLLAPGDGPI 211

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  + I K+ ++++I    + G +P+  + + L R       + I T 
Sbjct: 212 VLVLAPTRELAVQIKQEIDKFGRSSRIRNTCVYGGVPKGPQIRDLSR----GVEVCIATP 267

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D ++  K        L+L   D     G   Q R  ++Q       L+ +AT    
Sbjct: 268 GRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMWSATWPKE 327

Query: 434 TLVLTSLGDIDISKI----TEKPAGR--KPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              L +    D  ++     +  A      I  V+  + + D +I+ L+ V+   +    
Sbjct: 328 VRALATDFLQDFIQVNIGSMDLAANHRITQIVEVVTDMEKRDRMIKHLEKVMENKENKIL 387

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            R   +    L +    +++I HG     +++ V+D FK+    +++A
Sbjct: 388 IFV-------GTKRVADDITRFLRQDGWPALSI-HGDKQQNERDWVLDQFKSAKSPIMVA 439

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV + + ++  +  +     +H++ GR GR     + I  +     K +   
Sbjct: 440 TDVASRGIDVRNITHVLNYDYPNNSEDYIHRI-GRTGRAGAKGTAITFFTTDNQKQARDL 498

Query: 608 LSVLKN 613
           ++VL+ 
Sbjct: 499 VNVLQE 504


>gi|242043730|ref|XP_002459736.1| hypothetical protein SORBIDRAFT_02g009590 [Sorghum bicolor]
 gi|241923113|gb|EER96257.1| hypothetical protein SORBIDRAFT_02g009590 [Sorghum bicolor]
          Length = 512

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/392 (17%), Positives = 144/392 (36%), Gaps = 43/392 (10%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           K       +     +Q +     F+ P+  Q  A   +L           I     GSGK
Sbjct: 89  KYAPLRSFSAAELPSQVLDCCSAFARPSPIQAHAWPFLLDGRD------FIGIAATGSGK 142

Query: 307 TLVALIAMAAAVEAG----------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           T+   +     +              + ++++P   LAQQ  + + +      I    + 
Sbjct: 143 TIAFGVPALMHIRKKVGGKAVKKAVPRCLVLSPTRELAQQIADVLSEAGAPCGIKSVCLY 202

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQR 411
           G   +  +  AL+        I+IGT    +D I+     L  V     DE  R      
Sbjct: 203 GGTKKEPQISALKS----GVDIVIGTPGRMKDLIEMGVCRLNEVSFVVLDEADRM----- 253

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI--D 469
           L +  +     +L  T++ + + ++ ++   + + K+ ++     PIK VI   +     
Sbjct: 254 LDMGFEPEVRAILSQTSS-VRQMVMFSATWPLAVHKLAQEFMDPNPIKVVIGSEDLAANH 312

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFR--------SVVERFNSLHEHFTSSIAII 521
           +V++ ++V+    + +  +    +  +  + R            R  ++ +        +
Sbjct: 313 DVMQIVEVLDDRTRDSRLLALLDKYHQAQSNRVLVFVLYKKEAARVETMLQRRGWKAVSV 372

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG  +  D+   +  FK G C L+IAT V   G+D+ D  ++I  +        +H++ G
Sbjct: 373 HGDKAQHDRTKALSLFKEGKCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRI-G 431

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           R GR  +       +       +   ++VL+ 
Sbjct: 432 RTGRAGKKGVAHTFFTQANKALAGELVNVLRE 463


>gi|127511532|ref|YP_001092729.1| ATP-dependent RNA helicase DbpA [Shewanella loihica PV-4]
 gi|126636827|gb|ABO22470.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 468

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 164/446 (36%), Gaps = 62/446 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L++I F   T  Q  ++  IL           I QG  GSGKT    + +   ++     
Sbjct: 26  LKSIGFHQMTPIQAQSLPAILNGQDV------IGQGKTGSGKTAAFGLGLLNKLDVKRFR 79

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++ P   LA Q    ++   +    I +  + G +P   +  +LE      AHII+
Sbjct: 80  IQTLVLCPTRELADQVAAELRTLARGIHNIKILTLCGGVPMGPQIGSLEH----GAHIIV 135

Query: 381 GTHALFQDSIQYYKLILVIVD--------EQHRFGVQQRLK--LTQKATAPHVLLMTATP 430
           GT     D +   +L L  VD             G Q+ L   + +       LL +AT 
Sbjct: 136 GTPGRIIDHLDRGRLDLDNVDTLVLDEADRMLEMGFQRELDAIMQEVPRERQTLLFSATF 195

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYW 487
             +   L    + D  + K+  +  G    +      N  D +     ++L  + + A  
Sbjct: 196 PEQIQGLSEQFMIDPLMVKVEVQHGGESIEQHFYECGNNNDRMKALQLLLLKHQPESAVV 255

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C    E K+   +     F         S+  +HG +   D++ ++  F N +  +++A
Sbjct: 256 FCNTKRETKDVAAKLTNAGF---------SVVALHGDLEQRDRDQMLLKFANKSASVMVA 306

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+    +++  +  +     +H++ GR GR     +   L++          
Sbjct: 307 TDVAARGLDIDALDMVVNYHMAYDTEVHIHRI-GRTGRAGSKGAAHTLFNHEDGYKLSLL 365

Query: 608 LSVLKNTEDGFLIAEEDL--------------------KQRKEGEILG--IKQSGMPKFL 645
              L    DG  +  E L                    ++ + G+ILG     +G+    
Sbjct: 366 ADALGREIDGEALPGEALLDTMPPQPRMVTIQIDGGKKQKVRPGDILGCLTGDNGIEGSE 425

Query: 646 IAQPEL--HDSLLEIARKDAKHILTQ 669
           + + ++    S + + RK  +  L +
Sbjct: 426 VGKIKITEFRSYVAVDRKVLRKALNK 451


>gi|297847510|ref|XP_002891636.1| hypothetical protein ARALYDRAFT_474250 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337478|gb|EFH67895.1| hypothetical protein ARALYDRAFT_474250 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 392

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 132/345 (38%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P++ Q+ A+  IL+          I Q   G+GKT +  I++   V       QA++++
Sbjct: 44  KPSEIQQRALVPILKGRDV------IAQAQSGTGKTSMIAISVCQIVNTSSRKVQALVLS 97

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I+    +T I      G        K LER      H + GT     D
Sbjct: 98  PSRELASQTEKTIQVIGAHTNIQAHACIGGKSIGEDIKKLER----GVHAVSGTPGRVYD 153

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLT 438
            I+   L        +L   DE    G++ ++    +A    +   L++AT     L +T
Sbjct: 154 MIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMT 213

Query: 439 SLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
                D  +I  KP     + IK   + +++ +   + L  +       +A   C     
Sbjct: 214 EKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLIINQAIIFCNT--- 270

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R  V+            ++ +HG     +++ +M+ F++   ++LIA+ V   G
Sbjct: 271 ------RQKVDWLTEKMRSSNFIVSSMHGDKRQKERDEIMNQFRSFKSRVLIASDVWARG 324

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           IDV   S +I  +  +     +H++ GR GR       I      
Sbjct: 325 IDVQTVSHVINYDIPNNPELYIHRI-GRAGRFGREGVAINFVKSS 368


>gi|302910116|ref|XP_003050220.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256731157|gb|EEU44507.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 407

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 127/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SP+  Q  AI  + +          I Q   G+GKT    I+M   +       QA++++
Sbjct: 55  SPSAVQSRAIVQVCKGRDT------IAQAQSGTGKTATFSISMLQVINIAVRETQALVLS 108

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+       HI+ GT     D
Sbjct: 109 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQ----HIVSGTPGRVAD 164

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 165 MIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLP---------PATQVVVVSAT 215

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 216 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQ 274

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 275 AVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWAR 334

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 335 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTTE 379


>gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 493

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 128/363 (35%), Gaps = 40/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAQAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPQASTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    ++ Y ++T +   ++ G +    + + L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSEQLRR----GVEILI 142

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D +Q     L  V     DE  R      L   Q       +L       +TL
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQ------RILNLLPKERQTL 196

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I K+      R P    +   N     + ++   ++EG K   +   I E+
Sbjct: 197 LFSATFSGEIKKLAATYL-RDPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQLIRER 255

Query: 496 K------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +    R     E        IHG  +  ++   +D+FK G  + L+AT 
Sbjct: 256 SLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEIEALVATD 315

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +   +I  +        +H++ GR GR       + L  P   K       
Sbjct: 316 VAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIEK 374

Query: 610 VLK 612
           ++K
Sbjct: 375 LIK 377


>gi|168491523|ref|ZP_02715666.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC0288-04]
 gi|168493488|ref|ZP_02717631.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC3059-06]
 gi|182684538|ref|YP_001836285.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           CGSP14]
 gi|221232344|ref|YP_002511497.1| DEAD/DEAH box helicase [Streptococcus pneumoniae ATCC 700669]
 gi|225855026|ref|YP_002736538.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae JJA]
 gi|182629872|gb|ACB90820.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           CGSP14]
 gi|183574224|gb|EDT94752.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC0288-04]
 gi|183576330|gb|EDT96858.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC3059-06]
 gi|220674805|emb|CAR69378.1| DEAD box helicase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225724107|gb|ACO19960.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae JJA]
          Length = 524

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/362 (20%), Positives = 132/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   EA  QA+++AP 
Sbjct: 25  SPIQEQTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLEKIRIEEATIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLQDIETLILDEADEMLNMGFLEDIEA-------IISRVPENRQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRS 502
            K       + P    I       E++++  + + E +K   +   ++  +      F  
Sbjct: 188 IKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGR 247

Query: 503 VVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|313896720|ref|ZP_07830268.1| DEAD-box ATP-dependent RNA helicase CshA [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312974637|gb|EFR40104.1| DEAD-box ATP-dependent RNA helicase CshA [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 423

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 131/350 (37%), Gaps = 22/350 (6%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT  QE A+  +            I Q   G+GKTL  L+ +   ++  G   QA+++AP
Sbjct: 25  PTPVQERAVPAMRVGRDV------IAQAQTGTGKTLAFLLPVLEKIKPQGAVVQALVIAP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q     +       I   ++ G      +++ L R       ++IGT     D 
Sbjct: 79  TRELAIQIARVAEPLAAALSIGTTLVYGGADIERQKEKLRR----HPQLVIGTPGRLLDH 134

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++   L L  V++       + LKL        +L  TA      L L S    +     
Sbjct: 135 VRRGTLALGSVNKVVLDEADEMLKLGFIEDVETLLGHTAQDY--QLALFSATMPERIVQL 192

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVER 506
            K     P +  I   +   E IE++ + ++E +K   +C  I E+       F +  ER
Sbjct: 193 TKRFMHNPARIKIEGEHTTLENIEQIALSVNEEEKLDRLCASINEEAPYLAMVFCATKER 252

Query: 507 FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            ++L          +  + G ++   +  V+  F+    ++L AT +   G+D+   + +
Sbjct: 253 THALMMALAGRGYLVDALSGNLTQTQRAFVLRQFRAAKLQILCATDIAARGLDIEGVTHV 312

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
              +        +H++ GR GR       I L      +      + LK 
Sbjct: 313 YNYDLPPTVTDYIHRI-GRTGRAGARGRAITLVTARQHEKLRKIEAALKE 361


>gi|260223394|emb|CBA33917.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 520

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/342 (17%), Positives = 117/342 (34%), Gaps = 30/342 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
           + T  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 44  TMTPIQAQAIPVVLTGKDV------MGAAQTGTGKTAAFALPLLQRLMKHENASTSPARH 97

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   LA Q  + +K Y + T +   ++ G M    +   L+        +++
Sbjct: 98  PVRALVLLPTRELADQVAQQVKLYAKYTNLRSAVVFGGMDMKPQTLELKA----GVEVLV 153

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D I+    +L  V E        R+           +L        TL+ ++ 
Sbjct: 154 ATPGRLLDHIEAKNAVLNQV-EYVVLDEADRMLDIGFLPDLQRILSYLPKTRTTLLFSAT 212

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
              +I ++      + PI   +   N     +E+    +++  K + +   +  K     
Sbjct: 213 FSPEIKRLANSYL-QNPITIEVARSNATASTVEQHFYRVNDDDKRHALLQIVRSKDIKQA 271

Query: 499 ----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +    R     E      A +HG  S  ++   +++FK G   LL+ T V   G
Sbjct: 272 FVFVNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKKGEVDLLVCTDVAARG 331

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +D+ D   +   +        +H++ GR GR       +   
Sbjct: 332 LDIKDVPAVFNMDIPFNAEDYVHRI-GRTGRAGASGLAVSFV 372


>gi|238491700|ref|XP_002377087.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus flavus
           NRRL3357]
 gi|220697500|gb|EED53841.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus flavus
           NRRL3357]
          Length = 676

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/380 (16%), Positives = 137/380 (36%), Gaps = 56/380 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGG-------- 322
           +PT  Q+ +I  +   M+ ++ M        GSGKT   L  +   A + G         
Sbjct: 209 TPTPVQKYSIPIV---MNGRDLM---ACAQTGSGKTGGFLFPILSQAFQNGPSPTPAPAS 262

Query: 323 -------------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                         ++I+AP   L  Q ++  +K+   + +   ++ G      + + +E
Sbjct: 263 GQFSYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIE 322

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATA 420
           R       +++ T     D I+  +        LIL   D     G + Q  ++ +    
Sbjct: 323 R----GCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDM 378

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PHV         +TL+ ++    DI  +  +   +  +   +  +    E I +    + 
Sbjct: 379 PHV------NDRQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEYVE 431

Query: 481 EGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           +  K   +   +               + + +  +    +       IHG  +  ++E  
Sbjct: 432 DHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERA 491

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           ++ F++G C +L+AT V   G+D+ + + +I  +        +H++ GR GR        
Sbjct: 492 LEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGIAT 550

Query: 594 LLYHPPLSKNSYTRLSVLKN 613
             ++          + +LK 
Sbjct: 551 AFFNRGNRGVVRDLIDLLKE 570


>gi|18645108|gb|AAL76409.1| ATP-dependent RNA helicase RhlE [uncultured marine proteobacterium]
          Length = 446

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 128/359 (35%), Gaps = 36/359 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L+          +     G+GKT    + +   +  G        +A
Sbjct: 32  APSPIQAQAIPAVLEGRDV------MAAAQTGTGKTAGFTLPLLHGLSKGQPAKANQVRA 85

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +  Y +   +   ++ G +    +   L +       I+I T  
Sbjct: 86  LVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRLRK----GVDILIATPG 141

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++ + KL ++I+DE  R      +            +M A P  R  ++ S
Sbjct: 142 RLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDI-------RRIMKALPKKRQNLMFS 194

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +  +   K     P++  + P N     + +    + + +K + +   I +     
Sbjct: 195 ATFSEDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPVDKNQKRHLLVELINQHNWEQ 254

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E      A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 255 VLVFSRTKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEFKSGKLRVLVATDIAAR 314

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           G+D+     ++  +        +H++ GR GR       I L     ++       +++
Sbjct: 315 GLDIEQLPQVVNLDLPEVAQDYVHRI-GRTGRAGATGQAISLVSADEAQLLQDIERLIQ 372


>gi|71749190|ref|XP_827934.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70833318|gb|EAN78822.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 660

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 133/369 (36%), Gaps = 37/369 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------------ 319
            PT  Q   I   L      N    +     GSGKT   LI     +             
Sbjct: 179 KPTPVQSLGIPTAL------NHRDLMACAQTGSGKTASYLIPAINEILLNISNRPPYSPG 232

Query: 320 --AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             +  QA+I+AP   L+ Q Y   +K+T +T +   ++ G     H+   L R       
Sbjct: 233 SHSSPQALILAPTRELSLQIYGEARKFTYHTPVRCVVVYGGADPRHQVHELSRGCK---- 288

Query: 378 IIIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +++ T     D      +++ ++  +I+DE  R          +         M      
Sbjct: 289 LLVATPGRLMDMFSRGYVRFSEIRFLILDEADRMLDMGFEPQIRMIVQGPDSDMPRAGQR 348

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++   ++I ++  +    +     +  +    E I +    + +  K   +   +
Sbjct: 349 QTLLYSATFPVEIQRLA-REFMCRHSFLQVGRVGSTTENITQDVRWIEDPDKRQALLTLL 407

Query: 493 EEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            E +          +   +       +   +   IHG     ++E  +  FK+G C++L+
Sbjct: 408 RENEGKLVLVFVEKKRDADYLERFLRNSELACVSIHGDRVQREREEALRLFKSGACQVLV 467

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ +  ++I  +        +H++ GR GR  ++   I  ++         
Sbjct: 468 ATDVASRGLDIPNVGVVIQYDMPSNIDDYVHRI-GRTGRAGKVGVAISFFNEKNRNIVDD 526

Query: 607 RLSVLKNTE 615
            + +L  T 
Sbjct: 527 LIPLLNETN 535


>gi|294626035|ref|ZP_06704645.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599705|gb|EFF43832.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 458

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/465 (17%), Positives = 170/465 (36%), Gaps = 73/465 (15%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + ++  T  Q  ++  ILQ +        I Q   GSGKT    + +   ++     
Sbjct: 17  IDALGYTVLTPIQAQSLPPILQGLDV------IAQAPTGSGKTAAFGLGLLQKLDPALTR 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++       + + ++TG MP   +  +LE        +++
Sbjct: 71  AQALVLCPTRELADQVGKQLRRLATGIPNMKLVVLTGGMPLGPQLASLEA---HDPQVVV 127

Query: 381 GTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    Q+  +           L+L   D     G ++ ++        H          
Sbjct: 128 GTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKH---------R 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           ++L+ ++     I  +  +   ++P++  +   +   E+ ++   V    ++       +
Sbjct: 179 QSLLFSATFPDSIRALA-RELLKEPVEITVEGADSAPEIDQQFFEVDPTYRQKAVAGLLL 237

Query: 493 EEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
               E      N R  V+      + F  S   +HG M   D++ V+  F N +C +L+A
Sbjct: 238 RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           + V   G+DV D S ++            H++ GR  R  +    + L  P  +  +   
Sbjct: 298 SDVAARGLDVEDLSAVVNYELPTDTETYRHRI-GRTARAGKHGLALSLVAPRETTRAQAL 356

Query: 608 LSVLKNTEDGFLI------------------AEEDLKQ-------RKEGEILG--IKQSG 640
                 TE G  +                  A   L+         + G+ILG    ++G
Sbjct: 357 -----ETEQGQPLKWSRAPLATARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAG 411

Query: 641 MPKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           +    I +  ++   S + IAR      L        ++G+  R+
Sbjct: 412 LSGAAIGKIAIYPTRSYVAIARAQVAKALAHL-HAGKIKGRRFRV 455


>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 484

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 125/368 (33%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           SPT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  SPTPIQAKAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    ++ Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSDQLRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
                 L  T L +    ++    +    +  V+  +   D+    ++++   G K   +
Sbjct: 203 SGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAVVQLIRERGLKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E        IHG  S  ++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKRGEVEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 373

Query: 609 SVLKNTED 616
            ++K   D
Sbjct: 374 KLIKRPLD 381


>gi|269218549|ref|ZP_06162403.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211660|gb|EEZ78000.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 767

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 134/350 (38%), Gaps = 36/350 (10%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
           + + FS PT  Q +AI  +L+          +     G+GKT    + + A ++      
Sbjct: 143 KELGFSAPTAIQAAAIPILLRGRDV------VGVAQTGTGKTAAFALPLLAHIDPEKREV 196

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+++AP   LA Q  + I+ +   +  + V  + G      + KALE    G A +++G
Sbjct: 197 QALVLAPTRELAMQGAQAIESFAAKSRGVDVAAVYGGSSYLPQLKALE----GGAQVVVG 252

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVL--LMTAT-- 429
           T     D +    L L  V        DE  R G  + ++          +  L +AT  
Sbjct: 253 TPGRIMDLMDRGALRLDAVRYFVLDEADEMLRMGFAEDVEKIASEVPEGRISALFSATMP 312

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P  R +    L D +   I+        +K +   +    ++    +V+     +A  + 
Sbjct: 313 PPIRRVAERHLSDAEEVTISRPATTVSTVKQMYAVVPERHKIGALARVLAVTEAQAALVF 372

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         RS  E           + A + G +   ++E ++   ++GT  +L+AT 
Sbjct: 373 VRT--------RSTAEDLTIELGARGVATAALSGDVVQKEREKLVARLRDGTLDVLVATD 424

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   G+DV    +++  +        +H++ GR GR       I    P 
Sbjct: 425 VAARGLDVDRIGLVVNFDVPRETDTYVHRI-GRTGRAGRTGESITFVTPK 473


>gi|209559644|ref|YP_002286116.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
 gi|209540845|gb|ACI61421.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
          Length = 539

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 125/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +       QA+++AP 
Sbjct: 25  SPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ +   + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   LIL  V        DE    G        +++       LL +AT P P + + + 
Sbjct: 135 KRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  +I  K      +    + +   ++     +++     +   +  +       
Sbjct: 195 FMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D+ 
Sbjct: 249 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR  +    I    P 
Sbjct: 307 GVTHVYNYDITQDPESYVHRI-GRTGRAGKSGESITFVSPN 346


>gi|71279831|ref|YP_267868.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71145571|gb|AAZ26044.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 466

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 132/345 (38%), Gaps = 38/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +P+  Q  AI  ++           +     G+GKT    + +   + +           
Sbjct: 28  TPSPIQAQAIPAVISGRDV------MAAAQTGTGKTAGFTLPLLQRLSSSKGNKVSSNNV 81

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E I+ Y +   +   ++ G +    +   L +       +++ T
Sbjct: 82  RALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARLRQ----GVDVLVAT 137

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D     ++++ +L + I+DE  R      ++  +K       LMTA P  R  +L
Sbjct: 138 PGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKK-------LMTALPKDRQNLL 190

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            S       +   K     P++  +   N   E + +    + + +K   +   I+E   
Sbjct: 191 FSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKRKPAVLTHLIKENNW 250

Query: 498 SNFRSVVER---FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  +     N L +H  +   + A IHG  S   +   + +FK+G+ K+L+AT + 
Sbjct: 251 QQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKILVATDIA 310

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             GID+     ++  +  +     +H++ GR  R       + L 
Sbjct: 311 ARGIDIDLLPQVVNFDLPNVPEDYVHRI-GRTARAGNTGQALSLV 354


>gi|327304303|ref|XP_003236843.1| ATP-dependent RNA helicase DED1 [Trichophyton rubrum CBS 118892]
 gi|326459841|gb|EGD85294.1| ATP-dependent RNA helicase DED1 [Trichophyton rubrum CBS 118892]
          Length = 678

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 134/374 (35%), Gaps = 47/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----------EAGG 322
           PT  Q+ +I  +   M  ++ M        GSGKT   L  + +            + GG
Sbjct: 222 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQAFQNGPSPAPTQQGG 275

Query: 323 Q------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           Q            ++I+AP   L  Q Y+  +K+   + +   ++ G      + + +ER
Sbjct: 276 QFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIER 335

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLL 425
                  +++ T     D I+  ++ L  +     DE  R          ++      + 
Sbjct: 336 ----GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMP 391

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
             A    +TL+ ++    DI  +  +   +  +   +  +    E I +    + +  K 
Sbjct: 392 PVAG--RQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEYVEDNDKR 448

Query: 486 YWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +   +              + + +  +    +       IHG  +  ++E  ++ F+N
Sbjct: 449 SVLLDILHTHGAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRN 508

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G C +L+AT V   G+D+ + + ++  +        +H++ GR GR          ++  
Sbjct: 509 GRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI-GRTGRAGNTGISTAFFNRG 567

Query: 600 LSKNSYTRLSVLKN 613
                   + +LK 
Sbjct: 568 NRGVVRDLIELLKE 581


>gi|307191879|gb|EFN75298.1| Probable ATP-dependent RNA helicase DDX5 [Harpegnathos saltator]
          Length = 627

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 93/427 (21%), Positives = 154/427 (36%), Gaps = 43/427 (10%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI--- 269
              KDF    PA    + +E+   +    +  K       I    EG     ++  I   
Sbjct: 84  PLRKDFYVEHPAVRNRSKEEVSQFRENTEITVKGENVPNPIQYFEEGNFPPYVMEGIRRQ 143

Query: 270 PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EA 320
            +S PT  Q       L        ++ I Q   GSGKTL  ++     +          
Sbjct: 144 GYSQPTPIQAQGWPIAL----SGRDLVAIAQ--TGSGKTLGYILPAIVHIIHQPRLSNGD 197

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+I+AP   LAQQ  E    + ++  +    I G  P+  +   L+R       I I
Sbjct: 198 GPIALILAPTRELAQQIQEVANCFGESAAVRNTCIFGGAPKGPQAHDLDR----GVEICI 253

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D ++           L+L   D     G   Q R  + Q      VL+ +AT 
Sbjct: 254 ATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATW 313

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAY 486
               R L    L D     I           T II + +  E   +L  +L E   +K  
Sbjct: 314 PKEVRALAEDFLTDYTHLNIGSLTLSANHNITQIIDVCQEFEKDSKLFRLLQEIGNEKEN 373

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                +E K++ +  +   R +            IHG  +  +++ V+  F++G   +L+
Sbjct: 374 KTIIFVETKRKVDDITRNIRRDGWQ------ALSIHGDKNQQERDHVLQEFRSGRAPILV 427

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV D   +I  +        +H++ GR GR  +  +    +     K++  
Sbjct: 428 ATDVAARGLDVDDVKYVINFDYPSSSEDYIHRI-GRTGRRRQTGTAYAFFTSHNMKHAGD 486

Query: 607 RLSVLKN 613
            + VL+ 
Sbjct: 487 LIEVLRE 493


>gi|303251558|ref|ZP_07337732.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649556|gb|EFL79738.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 619

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/417 (20%), Positives = 150/417 (35%), Gaps = 40/417 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q+  I  +L           +     GSGKT    + + A ++      Q ++MA
Sbjct: 28  TPSPIQQETIPHLLAGRDV------LGMAQTGSGKTAAFSLPLLAQIDPTKRHPQMLVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  +++T+N   + V  + G      R     R     + +++GT     
Sbjct: 82  PTRELAIQVADACEQFTKNMKGVNVVTVYGG----QRYDIQLRALKQGSQVVVGTPGRIL 137

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIP-RTL 435
           D I+   L        +L   DE  R G    ++  + +        L +AT P P R +
Sbjct: 138 DHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRI 197

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               + D    KI         I      +N   +    L+ +  E   A  I  + +  
Sbjct: 198 TRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTG 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                         L E      A ++G M+   +E  +D  K+G   +L+AT V   GI
Sbjct: 258 TID--------ITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGI 309

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+   S+++  +      + +H++ GR GR       +L   P   +       ++K   
Sbjct: 310 DIERISLVVNFDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPI 368

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE---IARKDAKHILTQ 669
           D   I   ++   K  E    + S   +      E +  LLE    A +D + +   
Sbjct: 369 DEVAIPNHEILMAKRREKFKARVS--KQLEHHDLEKYRELLEDLFTADQDHEELAAA 423


>gi|302501664|ref|XP_003012824.1| hypothetical protein ARB_01075 [Arthroderma benhamiae CBS 112371]
 gi|291176384|gb|EFE32184.1| hypothetical protein ARB_01075 [Arthroderma benhamiae CBS 112371]
          Length = 677

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 134/374 (35%), Gaps = 47/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----------EAGG 322
           PT  Q+ +I  +   M  ++ M        GSGKT   L  + +            + GG
Sbjct: 221 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQAFQNGPSPAPTQQGG 274

Query: 323 Q------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           Q            ++I+AP   L  Q Y+  +K+   + +   ++ G      + + +ER
Sbjct: 275 QFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIER 334

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLL 425
                  +++ T     D I+  ++ L  +     DE  R          ++      + 
Sbjct: 335 ----GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMP 390

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
             A    +TL+ ++    DI  +  +   +  +   +  +    E I +    + +  K 
Sbjct: 391 PVAG--RQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEYVEDNDKR 447

Query: 486 YWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +   +              + + +  +    +       IHG  +  ++E  ++ F+N
Sbjct: 448 SVLLDILHTHGAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRN 507

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G C +L+AT V   G+D+ + + ++  +        +H++ GR GR          ++  
Sbjct: 508 GRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI-GRTGRAGNTGISTAFFNRG 566

Query: 600 LSKNSYTRLSVLKN 613
                   + +LK 
Sbjct: 567 NRGVVRDLIELLKE 580


>gi|169773691|ref|XP_001821314.1| ATP-dependent RNA helicase ded1 [Aspergillus oryzae RIB40]
 gi|91206555|sp|Q2UGK3|DED1_ASPOR RecName: Full=ATP-dependent RNA helicase ded1
 gi|83769175|dbj|BAE59312.1| unnamed protein product [Aspergillus oryzae]
          Length = 675

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/380 (16%), Positives = 137/380 (36%), Gaps = 56/380 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGG-------- 322
           +PT  Q+ +I  +   M+ ++ M        GSGKT   L  +   A + G         
Sbjct: 208 TPTPVQKYSIPIV---MNGRDLM---ACAQTGSGKTGGFLFPILSQAFQNGPSPTPAPAS 261

Query: 323 -------------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                         ++I+AP   L  Q ++  +K+   + +   ++ G      + + +E
Sbjct: 262 GQFSYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIE 321

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATA 420
           R       +++ T     D I+  +        LIL   D     G + Q  ++ +    
Sbjct: 322 R----GCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDM 377

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           PHV         +TL+ ++    DI  +  +   +  +   +  +    E I +    + 
Sbjct: 378 PHV------NDRQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEYVE 430

Query: 481 EGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           +  K   +   +               + + +  +    +       IHG  +  ++E  
Sbjct: 431 DHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERA 490

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           ++ F++G C +L+AT V   G+D+ + + +I  +        +H++ GR GR        
Sbjct: 491 LEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGIAT 549

Query: 594 LLYHPPLSKNSYTRLSVLKN 613
             ++          + +LK 
Sbjct: 550 AFFNRGNRGVVRDLIDLLKE 569


>gi|332670437|ref|YP_004453445.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332339475|gb|AEE46058.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 596

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 141/379 (37%), Gaps = 40/379 (10%)

Query: 261 IAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
             ++ + ++ F +P+  Q  A+  +L           +     G+GKT    + + AAV+
Sbjct: 35  PLERAVADLGFVTPSAIQSQAVPALLAGRD------IVGVAQTGTGKTAAFGLPLLAAVD 88

Query: 320 AGG---QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQ 375
           AG    QA+++ P   LA Q  + I  +  +   + V  + G  P   +++A+ R     
Sbjct: 89  AGTAGVQAIVLTPTRELAMQVADAITSFATHLPGLAVVAVYGGSPFLPQQRAIAR----G 144

Query: 376 AHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A +++GT     D +    L+L  V        DE  R G  + +            ++ 
Sbjct: 145 AQVVVGTPGRVLDHLDRGTLVLDQVRYLVLDEADEMLRMGFAEDVD----------RVLA 194

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           +TP  R + L S       +   +    +P++  +   +     + +   V+    K   
Sbjct: 195 STPDRRQVALFSATMPAPIRRVAEQHLHQPVEITVARQSSTVTTVRQTYAVVPYRHKIGA 254

Query: 488 ICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +   +              R   E   S       S A I G ++  D+E ++D  ++G 
Sbjct: 255 LGRVLAVTDADATIVFVRTRGAAEEVGSALVERGISAAHISGDVAQSDREKIVDRLRSGA 314

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   G+DV    +++  +        +H++ GR GR       +    P   
Sbjct: 315 LDVLVATDVAARGLDVERIGLVVNFDVPREAETYVHRI-GRTGRAGREGVALSFVTPAEQ 373

Query: 602 KNSYTRLSVLKNTEDGFLI 620
               T     + T +   I
Sbjct: 374 SRLRTIERTTRVTLEQVPI 392


>gi|302854279|ref|XP_002958649.1| hypothetical protein VOLCADRAFT_69703 [Volvox carteri f.
           nagariensis]
 gi|300256038|gb|EFJ40315.1| hypothetical protein VOLCADRAFT_69703 [Volvox carteri f.
           nagariensis]
          Length = 582

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/382 (17%), Positives = 134/382 (35%), Gaps = 50/382 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q   +   L           +   + GSGKT    I M              G  
Sbjct: 157 TPTPIQAQGLPIALSGRD------ILGCAETGSGKTASFSIPMIQHCLNQPPLRPGDGPM 210

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           A+++AP   LAQQ    ++ +++++   +   I+ G +P   +R  L         +++ 
Sbjct: 211 ALVLAPTRELAQQIEREVRAFSRSSSRNVRTSIVVGGVPMQEQRHDLRN----GVEVVVA 266

Query: 382 THALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T   F D +Q       ++  V++DE  R          ++            P  +TL+
Sbjct: 267 TPGRFIDLLQQSYTNLSRVSYVVLDEADRMLDMGFEPQIKEVMNN------LPPRHQTLL 320

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I ++       KP+   I  ++     + +      EG+K   +   I  + 
Sbjct: 321 FSATMPKEIEELARAYLN-KPVTVKIGAVSTPTANVAQRLEHAPEGQKLDILVALISSEV 379

Query: 497 E---------------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                              ++  +   +  +        +HG +   ++E+ +  F  G 
Sbjct: 380 AAEASGGPPMPLTIVFVERKNRCDEVAAALQEDGIPANALHGGLGQFEREAALRDFAKGH 439

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            K+L+AT +   G+DV     +I  +        +H++ GR GR         L++   S
Sbjct: 440 IKVLVATDLASRGLDVKGIGHVINMDLPKTFEDYVHRI-GRTGRAGTKGRATSLWNDRDS 498

Query: 602 KNSYTRLSVLKNTE--DGFLIA 621
                    L   E  +GF  A
Sbjct: 499 FLVAQIKQALAELEKGNGFAFA 520


>gi|302662748|ref|XP_003023025.1| hypothetical protein TRV_02846 [Trichophyton verrucosum HKI 0517]
 gi|291187001|gb|EFE42407.1| hypothetical protein TRV_02846 [Trichophyton verrucosum HKI 0517]
          Length = 677

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 134/374 (35%), Gaps = 47/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----------EAGG 322
           PT  Q+ +I  +   M  ++ M        GSGKT   L  + +            + GG
Sbjct: 221 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQAFQNGPSPAPTQQGG 274

Query: 323 Q------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           Q            ++I+AP   L  Q Y+  +K+   + +   ++ G      + + +ER
Sbjct: 275 QFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIER 334

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLL 425
                  +++ T     D I+  ++ L  +     DE  R          ++      + 
Sbjct: 335 ----GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMP 390

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
             A    +TL+ ++    DI  +  +   +  +   +  +    E I +    + +  K 
Sbjct: 391 PVAG--RQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEYVEDNDKR 447

Query: 486 YWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +   +              + + +  +    +       IHG  +  ++E  ++ F+N
Sbjct: 448 SVLLDILHTHGAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRN 507

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G C +L+AT V   G+D+ + + ++  +        +H++ GR GR          ++  
Sbjct: 508 GRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI-GRTGRAGNTGISTAFFNRG 566

Query: 600 LSKNSYTRLSVLKN 613
                   + +LK 
Sbjct: 567 NRGVVRDLIELLKE 580


>gi|323343014|ref|ZP_08083245.1| ATP-dependent RNA helicase DbpA [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463078|gb|EFY08273.1| ATP-dependent RNA helicase DbpA [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 487

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/352 (21%), Positives = 133/352 (37%), Gaps = 41/352 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           ++ + +  PT  Q+  I  +L           ++Q   GSGKT    I +   VE     
Sbjct: 18  IQYLGYEAPTDVQQEVIPAVLSGK------NIVVQSQTGSGKTASFGIPICHQVEWKKRK 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++AP   LA Q  E +    +  ++ VE + G      + + L+ +     HI++ 
Sbjct: 72  PQVLVLAPTRELAIQIQEDLFNLGRFKRLKVEALFGRSSFEKQAQRLKEM----THILVA 127

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D +    + L  +        DE    G   ++   + +       LL +AT  
Sbjct: 128 TPGRLLDHMARETVDLSHIETLVIDEADEMFNMGFIDQITSIINRIPKKSQKLLFSATMP 187

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R          D+  +  K      I+T     +RIDE      +V    K A      
Sbjct: 188 ERV--------KDLCTLYIKNPQWIDIETESRVEDRIDERY---YIVDYPDKMALLESVL 236

Query: 492 IEEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           I E  +      N +  VE   +  E     +  +HG M    +  V+  FK+G  + L+
Sbjct: 237 ITENPDSSIIFCNTKEQVESVTNFMEDLGCKVDTLHGGMEQRFRTKVLADFKHGLFRYLV 296

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           AT V   G+D+ D S+++  +      +  H++ GR  R ++    +    P
Sbjct: 297 ATDVAARGLDIDDVSLVVNFDVPENTESYTHRV-GRTARVDKYGKAVTFASP 347


>gi|238502010|ref|XP_002382239.1| ATP-dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
 gi|220692476|gb|EED48823.1| ATP-dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
          Length = 498

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/428 (20%), Positives = 159/428 (37%), Gaps = 58/428 (13%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIP-F-SPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            +      I  +        +   +  F SPT  Q +    +            I   + 
Sbjct: 73  SENVMRPIISFSHLPPCKDDLYAPLSSFKSPTSIQSATWPLLFAGRDV------IGIAET 126

Query: 303 GSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           GSGKTL   +     ++             AVI++P   LA Q Y+ + K++ +  + + 
Sbjct: 127 GSGKTLAFGLPCLKKIQDSAMTKQKPYRPLAVIISPTRELAMQIYDQLLKFSGSVGVRMA 186

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF-- 406
            + G + +  +R+AL+      A +++ T    +D     S+   K+  +++DE  R   
Sbjct: 187 CVFGGVRKEEQREALK-----TAGVVVATPGRLKDLQNDGSVDLGKVKYLVLDEADRMLD 241

Query: 407 -GVQQRLKLT---QKATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGR----- 455
            G +Q +K        +    ++ TAT  P  R L  T +       I   P+       
Sbjct: 242 KGFEQDIKDIIRPMPVSKRQTIMFTATWPPSVRDLASTFMSSPVTVTIGGDPSADPRANT 301

Query: 456 --KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEH 513
             K +  V+ P  +   +++ L        +   +      KKE+       R   L   
Sbjct: 302 RIKQVVEVVKPHEKESRLVQLLNRSQRGVPEPEKVLAFCLYKKEAM------RIERLLRT 355

Query: 514 FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
               +A IHG +S  ++   +D+FK G   +L+AT V   G+D+     +I         
Sbjct: 356 KGFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPSVKQVINVTFPLTVE 415

Query: 574 AQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL--KQRKEG 631
             +H++ GR GR       + L+       S   ++VL+        A++D+     K G
Sbjct: 416 DYVHRI-GRTGRAGAEGHAVTLFTETDKAQSGALINVLRA-------AKQDIPEDLLKFG 467

Query: 632 EILGIKQS 639
             +  KQ 
Sbjct: 468 TTVKKKQH 475


>gi|170719699|ref|YP_001747387.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida W619]
 gi|169757702|gb|ACA71018.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 461

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 176/461 (38%), Gaps = 62/461 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + + S T  Q  ++  IL+          I Q   GSGKT    I +   +     G
Sbjct: 21  LDALGYASMTPIQAQSLPVILRGQD------LIAQAKTGSGKTAAFGIGLLNPINPRYFG 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    I +  + G +    +  +LE      AHII+
Sbjct: 75  CQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH----GAHIIV 130

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-T 434
           GT    Q  +    L+L      ++DE  R                   ++  TP  R T
Sbjct: 131 GTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIAS-------IIGKTPSRRQT 183

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I ++       +  + V +     D  IE+  + +   ++   +   +  
Sbjct: 184 LLFSATYPAGIEQLAADF--MRKPQQVKVESLHTDNQIEQRFIEIDPQQRLEAVTRVLGH 241

Query: 495 KKESNFRSVV---ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +  +  +     ++   +  H T+       +HG +   D++ V+  F N +  +L+AT
Sbjct: 242 YRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+    ++I           +H++ GR GR  E    + L  P     +    
Sbjct: 302 DVAARGLDIDGLDMVINVELARDAEIHVHRV-GRTGRAGEKGIAVSLVAPAEGHRAQAIE 360

Query: 609 SVLK-----------NTEDG---------FLIAEEDLKQRKEGEILG--IKQSGMPKFLI 646
           ++ K             + G           IA     + + G+ILG     +G+P   +
Sbjct: 361 ALQKSPLRWDQLDSLKNKGGELLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQV 420

Query: 647 AQPELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            +  + D  + + + R  AK  + +  +   ++G+++++ +
Sbjct: 421 GKIAIFDFQAFVAVERALAKQAMQRL-NSGKIKGRALKVRI 460


>gi|119500998|ref|XP_001267256.1| ATP dependent RNA helicase (Dbp1), putative [Neosartorya fischeri
           NRRL 181]
 gi|134034091|sp|A1CXK7|DED1_NEOFI RecName: Full=ATP-dependent RNA helicase ded1
 gi|119415421|gb|EAW25359.1| ATP dependent RNA helicase (Dbp1), putative [Neosartorya fischeri
           NRRL 181]
          Length = 676

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/379 (15%), Positives = 135/379 (35%), Gaps = 54/379 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGGQA------ 324
           +PT  Q+ +I  +   M+ ++ M        GSGKT   L  +   A + G  A      
Sbjct: 212 TPTPVQKYSIPIV---MNGRDLM---ACAQTGSGKTGGFLFPILSQAFQTGPSAVPAQAS 265

Query: 325 ---------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                          +I+AP   L  Q ++  +K+   + +   ++ G      + + +E
Sbjct: 266 GQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIE 325

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP 421
           R       +++ T     D I+  +        L+L   D     G + +++   +    
Sbjct: 326 R----GCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGED- 380

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
               M      +TL+ ++    DI  +  +   +  +   +  +    E I +    + +
Sbjct: 381 ----MPNVNERQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEYVED 435

Query: 482 GKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             K   +   +               + + +  +    +       IHG  +  ++E  +
Sbjct: 436 HDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERAL 495

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F++G C +L+AT V   G+D+ + + +I  +        +H++ GR GR         
Sbjct: 496 EMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGIATA 554

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++          + +LK 
Sbjct: 555 FFNRGNRGVVRELIDLLKE 573


>gi|13470594|ref|NP_102163.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
 gi|14021336|dbj|BAB47949.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
          Length = 467

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 138/361 (38%), Gaps = 39/361 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            P   Q  AI   L+       +  I Q   GSGKT    + + + +            +
Sbjct: 32  EPKPIQMQAIPPQLEG----RDIFGIAQ--TGSGKTAAFALPILSKIIALGTKRRAKTTR 85

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  + IK   +   +   ++ G + +  + K +         I+I T 
Sbjct: 86  ALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVAP----GVDILIATP 141

Query: 384 ALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLMTAT-PIPRTLVL 437
               D ++   LIL       +DE  R      +   ++       +  AT P  +T + 
Sbjct: 142 GRLTDLVREGDLILSDTKWLVLDEGDRMLDMGFINDVKR-------IAKATAPDRQTALF 194

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I+++  K   + P++  + P +     I +  V     +K   +   + ++  
Sbjct: 195 SATMPDEIAELA-KGLLKNPVRIEVSPQSTAAAEIVQGVVFARTKQKRQVLSTMLADEAM 253

Query: 498 S------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   +R     E      A+IHG  S   ++  ++ F+ G+ ++L+AT + 
Sbjct: 254 KSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFREGSVRILVATDIA 313

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV   S ++  +      + +H++ GR GR       I L  P  +        ++
Sbjct: 314 ARGIDVPGISHVVNFDLPDEAESYVHRI-GRTGRNGMDGIAITLCDPSENSKLRQVERII 372

Query: 612 K 612
           +
Sbjct: 373 R 373


>gi|121606092|ref|YP_983421.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120595061|gb|ABM38500.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 487

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 126/364 (34%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
           + T  QE AI  +LQ          +     G+GKT    + +   +             
Sbjct: 25  TMTPIQEQAIPVVLQGKDV------MGAAQTGTGKTAAFALPLLQRMMKHENASTSPARH 78

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   LA Q  E +K Y + T +   ++ G M    +   L++       +++
Sbjct: 79  PVRALVLLPTRELAVQVAEQVKLYAKYTNLNSAVVFGGMDMKPQTLELKK----GVEVLV 134

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFG-----VQQRLKLTQKATAPHVLLMTAT- 429
            T     D I+    +L  V     DE  R          +  L+        LL +AT 
Sbjct: 135 ATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRITLLFSATF 194

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  + L  + L D    ++    A    ++     +   D+     +++ +   K  ++
Sbjct: 195 SPEIKRLAASFLQDPVTIEVARSNATAATVEQHFYSVGADDKRRALHQILKARDLKQAFV 254

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E        +HG  S  ++   ++SFK+G   LL+ T
Sbjct: 255 FV--------NSKLGCARLARSLEREGLKTTALHGDKSQDERLKALESFKSGEVDLLVCT 306

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D   +   +        +H++ GR GR       +        +      
Sbjct: 307 DVAARGLDIKDVPAVFNFDVPFNAEDYVHRI-GRTGRAGASGLAVSFVAASDQRLVTDIE 365

Query: 609 SVLK 612
            ++K
Sbjct: 366 KLIK 369


>gi|291166137|gb|EFE28183.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
          Length = 539

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/354 (20%), Positives = 134/354 (37%), Gaps = 36/354 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            K  Q  L  + F   T  QE AI    +          I Q   G+GKT    I +   
Sbjct: 10  SKEIQMALEQLGFEEATIIQELAIPIATEGKD------LIGQSQTGTGKTFAFGIPILDN 63

Query: 318 VEAGG----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
           +        QA+++ P   LA Q      K T  T+I    + G      + K L++   
Sbjct: 64  ILQNNNHQIQALVICPTRELAVQVSNEFDKLTAFTKIRNIAVYGGEYIDKQIKGLKK--- 120

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHV 423
            +  I+IGT     D I+   + L  V        DE    G  + +   L + +     
Sbjct: 121 -KVQIVIGTPGRILDHIERKTIKLDHVRFVVLDEADEMLDMGFIEDIENILRETSEERQT 179

Query: 424 LLMTATPIPRTLVLT--SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           +L +AT     L L+   L + ++ ++  K      I+ + + +   D+     +++  E
Sbjct: 180 MLFSATMPAEILSLSKKYLKNPEMIRVKNKTMTVDQIEQIYMKVKNADKSEVLSRILQLE 239

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
             K   I          N + +V+      ++   ++  +HG +    ++ V++ F+ G 
Sbjct: 240 SSKKAIIF--------CNTKKMVDELVVDMQNRGYAVEALHGDLKQQKRDMVLNRFREGQ 291

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             +LIAT V   G+D+ D  ++I  +        +H++ GR GR          
Sbjct: 292 ISMLIATDVAARGLDIRDVDLVINYDLPIEEEQYVHRI-GRTGRAGASGKSYSF 344


>gi|295680824|ref|YP_003609398.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
 gi|295440719|gb|ADG19887.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 481

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/376 (17%), Positives = 134/376 (35%), Gaps = 45/376 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGG-------QA 324
           PT  Q  AI  +L           +     G+GKT    + +    V+ G        + 
Sbjct: 24  PTPVQAKAIPAVLGGKDV------MAAAQTGTGKTAGFALPLLQRLVQRGPAVSSNRARV 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA+Q  +    Y +   +      G +    +   L +       +++ T  
Sbjct: 78  LVLVPTRELAEQVLQSFIAYGRGLDLRFLAAYGGVSINPQMMKLRK----GVDVLVATPG 133

Query: 385 LFQD-----SIQYYK---LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRT 434
              D     ++Q+ +   L+L   D     G  + L             LL +AT     
Sbjct: 134 RLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQRQTLLFSATFTDDI 193

Query: 435 LVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
             + +        I+  P       IK  ++P+++ ++    + +V   G +   +    
Sbjct: 194 RAMAANILRGPVNISVSPPNATASRIKQWVVPVDKKNKPDLFMHLVAENGWQHALVFV-- 251

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R+ V+   ++ +    ++  IHG      +   ++ FK G  ++L+AT V  
Sbjct: 252 ------KTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKAGEVQMLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ D  ++I  +        +H++ GR GR       + L     +       ++++
Sbjct: 306 RGLDIDDLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALIR 364

Query: 613 NT-----EDGFLIAEE 623
            T     E GF  AE 
Sbjct: 365 QTLPRKEEPGFE-AEH 379


>gi|262283179|ref|ZP_06060946.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
 gi|262261431|gb|EEY80130.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
          Length = 523

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/362 (19%), Positives = 131/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          ++      QA+++AP 
Sbjct: 25  SPIQEQTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLNQIETLILDEADEMLNMGFLEDIES-------IISRVPEERQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            K       ++P    I       E++++  + + E +K   +   ++ ++         
Sbjct: 188 IKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGR 247

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|261402374|ref|YP_003246598.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
 gi|261369367|gb|ACX72116.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
          Length = 404

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 129/356 (36%), Gaps = 40/356 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I   L           + Q   GSGKT    + +   +  G   +A+I+ P
Sbjct: 28  KPTDIQTKVIPLFLNGEKN-----IVAQARTGSGKTASFALPLIELINEGEGIKAIILTP 82

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I     N  + +  + G  P   + K L+      A+I++GT     D 
Sbjct: 83  TRELAIQVADEINSLKGNKNLKIVKVYGGTPIQPQIKYLK-----NANIVVGTPGRVLDH 137

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           I    L L  V        DE    G    ++    A   +          R L+ ++  
Sbjct: 138 INRGTLNLKDVEYFILDEADEMLNMGFIDDVEKILNACNKN---------RRILLFSATM 188

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---- 497
            ++I  + +K               + +  IE+  + + E K+   +C  + ++      
Sbjct: 189 PVEILNLAKKYMNDYEFV-----RAKRNADIEQTFIEVDENKRFETLCRILRDRNFYGLV 243

Query: 498 -SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   +   ++          IHG +    +E V+  FK    K+LIAT V+  GID
Sbjct: 244 FCKTKKDTKDLANMLRDIGFKAGAIHGDLKQHQREKVVRLFKQKRIKILIATDVMSRGID 303

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           V D S ++  +      A +H++ GR GR  +    I + +    +        +K
Sbjct: 304 VNDLSHVVNYHLPQTPEAYMHRI-GRTGRAGKKGKAISIINRKEYRKLKHIERTMK 358


>gi|242080665|ref|XP_002445101.1| hypothetical protein SORBIDRAFT_07g004090 [Sorghum bicolor]
 gi|241941451|gb|EES14596.1| hypothetical protein SORBIDRAFT_07g004090 [Sorghum bicolor]
          Length = 1062

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 166/435 (38%), Gaps = 54/435 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           ++ + F  P   Q  A+  I+           I     GSGKTL  ++ M   V+     
Sbjct: 452 IKKLGFEKPMPIQTQALPIIMSGRD------CIGIAKTGSGKTLAFVLPMLRHVKDQPPV 505

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G   +IMAP   L  Q +  IKK+++   I    I G    A +   L+R     A
Sbjct: 506 VPGDGPIGLIMAPTRELVVQIHSDIKKFSKVLGINCVAIYGGSGVAQQISELKR----GA 561

Query: 377 HIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            I++ T     D +           ++  +++DE  R                  ++   
Sbjct: 562 EIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQIT------RIVQNT 615

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  +T++ ++     +  +  K    KP++  +   + +++ I +L  V  + ++ + +
Sbjct: 616 RPDRQTVLFSATFPRQVEILARKVLT-KPVEIQVGGRSVVNKDITQLVEVRPDTERFFRL 674

Query: 489 CPQIEEK----KESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGT 541
              + E     K   F    ++ +SL +           +HG     D+ES +  FK+  
Sbjct: 675 LELLGEWYVKGKILVFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQTDRESTIADFKSNV 734

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           C LLIAT+V   G+DV +  +++  +  +     +H++ GR GR       +        
Sbjct: 735 CSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRV-GRTGRAGRKGFAVTFISEEEE 793

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEI-LGIKQS-----GMPKFLIAQPELHDSL 655
           + +   +  L+ +E       + L  R   ++  G +Q+     G   F   + E     
Sbjct: 794 RYAPDLVKALELSEQAVPQDLKALADRFMAKVKQGTEQAHGTGYGGSGFKFNEEE----- 848

Query: 656 LEIARKDAKHILTQD 670
            + ARK AK    ++
Sbjct: 849 -DEARKTAKKAQARE 862


>gi|170734034|ref|YP_001765981.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169817276|gb|ACA91859.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 486

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 124/357 (34%), Gaps = 29/357 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----------EAG 321
           SPT  Q+ AI  +L           +     G+GKT    + +   +          +  
Sbjct: 23  SPTPIQQQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHTFYAEHRGAKRA 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R       I++ 
Sbjct: 77  VRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKR----GVDIVVA 132

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +Q   + L  +D         R+           +L    P  + L+ ++  
Sbjct: 133 TPGRLLDHMQQKTIDLSDLD-ILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATF 191

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-- 499
             +I  + +      P    +   N   E + +    +   +K   +   I E       
Sbjct: 192 SDEIKALADSLLD-SPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVL 250

Query: 500 ----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +    R          S   IHG  S   +   +  FKN T ++L+AT +   GI
Sbjct: 251 VFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGI 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           D+     ++  +  +     +H++ GR GR       + L      +       ++K
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLVCVDEKQLLRDIERLIK 366


>gi|550329|emb|CAA57417.1| putative RNA helicase [Dictyostelium discoideum]
          Length = 582

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 142/381 (37%), Gaps = 40/381 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +    +L+   +  PT  Q   I  I+           I     GSGKTL  L+ M   
Sbjct: 30  TEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRD------LIGIARTGSGKTLAFLLPMFRH 83

Query: 318 VEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           + A        G  A+IM+P   LA Q +   KK+++   +    + G    + +   L+
Sbjct: 84  ILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELK 143

Query: 370 RIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           R     A I++ T     D +           ++  +++DE  R                
Sbjct: 144 R----GADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRM------FDMGFGPQI 193

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT---VIIPINRIDEVIERLKVV 478
           + ++ +  P  +T++ ++     +  + +K   +          I  + I++ +E     
Sbjct: 194 NCIVDSIRPDRQTIMFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTE 253

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
               +    +     + +   F +  E  ++L+   ++S      +HG     D++  + 
Sbjct: 254 TRFRRLIELLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETIS 313

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FKN    +LIAT +   G+D+ D ++++  +        +H++ GR GR     +    
Sbjct: 314 DFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRV-GRTGRAGNRGTAYTF 372

Query: 596 YHPPLSKNSYTRLSVLKNTED 616
             P   + S + +  L+ +  
Sbjct: 373 ITPDEERFSSSIIKALEQSGS 393


>gi|290580897|ref|YP_003485289.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
 gi|254997796|dbj|BAH88397.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
          Length = 517

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/367 (19%), Positives = 134/367 (36%), Gaps = 38/367 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     ++      QA+++A
Sbjct: 23  EPSPIQELTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIDVINNVVQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ +  ++ V  + G      + KAL+      AHI++GT     D
Sbjct: 77  PTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L L  V        DE    G  + ++                   +TL+ ++ 
Sbjct: 133 LIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE---------TRQTLLFSAT 183

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
               I +I  K   ++P    I+      +++++  + + E +K   +   ++ ++    
Sbjct: 184 MPDAIKRIGVKFM-KEPEHVKIVAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELS 242

Query: 499 ----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+      +        IHG +    +  V+  FKN    +L+AT V   G
Sbjct: 243 IVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARG 302

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+   + +   +      + +H++ GR GR  +    I    P           + K  
Sbjct: 303 LDISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKHGQSITFVAPNEMGYLQIIEKLTKKR 361

Query: 615 EDGFLIA 621
             G   A
Sbjct: 362 MKGMKPA 368


>gi|16077525|ref|NP_388339.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|1881268|dbj|BAA19295.1| ydbR [Bacillus subtilis]
 gi|2632758|emb|CAB12265.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 511

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/436 (19%), Positives = 159/436 (36%), Gaps = 44/436 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           +  + F   T  Q   I   L +         I Q   G+GKT    I +   +      
Sbjct: 35  INRMGFEEATPIQAQTIPLGLSNKDV------IGQAQTGTGKTAAFGIPLVEKINPESPN 88

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++AP   LA Q  E + K  Q+ +  V  I G      + +AL++      +II+G
Sbjct: 89  IQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKK----NPNIIVG 144

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-- 429
           T     D I    + L  V        DE    G    +   L+   +    LL +AT  
Sbjct: 145 TPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMP 204

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            PI R +    + + +  K+  K      I+   + +    +     +++  +  +   +
Sbjct: 205 APIKR-IAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIV 263

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +       R V E   +L+    ++  I HG ++   +   +  FK G  ++L+AT
Sbjct: 264 FGRTK-------RRVDELAEALNLRGYAAEGI-HGDLTQAKRMVALRKFKEGAIEVLVAT 315

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+   + +   +      + +H++ GR GR  +    +    P          
Sbjct: 316 DVAARGLDISGVTHVYNFDVPQDPESYVHRI-GRTGRAGKTGMAMTFITPREKSMLRAIE 374

Query: 609 SVLKNTEDGFLIAEED--LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE-----IARK 661
              K   D       D  L+ +++  +  ++ +     L         LLE         
Sbjct: 375 QTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDHDAVTVVA 434

Query: 662 DAKHILTQDPDLTSVR 677
            A  + T++PD T VR
Sbjct: 435 AAIKMATKEPDDTPVR 450


>gi|281207583|gb|EFA81766.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 802

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 149/400 (37%), Gaps = 48/400 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q  +    L+       M+ +   + GSGKTL  L+     + A        G  
Sbjct: 420 APTAIQAQSWPVALKG----RDMIGL--AETGSGKTLAFLLPGVVHINAQPFLEPNDGPI 473

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q      K+  +++I    + G +P+  +   L         I+I T 
Sbjct: 474 MLVLAPTRELAMQIQAECDKFGSSSKIKNCAVYGGVPKFQQTSQLRS----GVEIVIATP 529

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP- 432
               D ++  K        L+L   D     G + +++  L+Q       L+ +AT    
Sbjct: 530 GRLIDLLETRKTNLKRVTYLVLDEADRMLDMGFEDQIRKILSQIRPDRQTLMFSATWPKV 589

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            ++L    L D    KI   E  A              + ++IE  +    + ++ +   
Sbjct: 590 VQSLANDFLKDPIQIKIGSAELSANHN-----------VKQIIEICEKN-DKQQRLFSFL 637

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            ++ ++K   F       N L  +        A IHG  +  +++  +  FK    ++LI
Sbjct: 638 EKVGDEKCIIFMETKNGVNLLQRNMQVAGFKCAGIHGDKTQGERDYSLQQFKKSGIQMLI 697

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV D   +I  +  +   + +H++ GR GR     +   L+     + +  
Sbjct: 698 ATDVASRGLDVKDIKYVINYDFPNTIESYIHRI-GRTGRAGATGTAFTLFTTNDMRLAGE 756

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
            ++VL         + E +   + G     +Q G      
Sbjct: 757 LITVLIEANQYVPPSLEQMAPNRGGFKSITEQYGRSNNRF 796


>gi|190571463|ref|YP_001975821.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190357735|emb|CAQ55186.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 408

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 137/341 (40%), Gaps = 34/341 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT  Q  AI   LQ          +     G+GKTL   I + A +      G A+++ P
Sbjct: 25  PTPIQVQAIPLALQGKD------ILGSAQTGTGKTLAFAIPLVAKLMNEPSIGSALVIVP 78

Query: 330 IGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q    I+K   Q++ + V ++ G  P   +   L++    +  IIIGT     D
Sbjct: 79  TRELAHQVTSEIRKLLSQSSLLRVALLIGGEPIFRQLNQLQK----KPQIIIGTPGRIID 134

Query: 389 SIQYYKL-----ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLTSLGD 442
            I+   L      ++++DE  R          ++       +M   P I +TL+ ++   
Sbjct: 135 HIERKTLVTRNVGILVLDETDRMFDMGFGIQIEE-------IMKHLPKIRQTLMFSATLP 187

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----E 497
            +I K+TEK    +P +  +         I++  V  SE +K   +  Q+ ++K      
Sbjct: 188 GEIVKLTEKYLN-QPERVSVDCQATTSVKIKQEVVYASESEKYGKLVTQLCQRKGSIIIF 246

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++          S   IHG +    +E V+DSF+ G  ++++AT V   G+D+
Sbjct: 247 VKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMVATDVASRGLDI 306

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                +I  +        +H++ GR  R       +    P
Sbjct: 307 PHIQHVINYDVPQSQADYVHRI-GRTARAGAEGFALSFVTP 346


>gi|165975989|ref|YP_001651582.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876090|gb|ABY69138.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 619

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/417 (20%), Positives = 150/417 (35%), Gaps = 40/417 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q+  I  +L           +     GSGKT    + + A ++      Q ++MA
Sbjct: 28  TPSPIQQETIPHLLAGRDV------LGMAQTGSGKTAAFSLPLLAQIDPTKRHPQMLVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  +++T+N   + V  + G      R     R     + +++GT     
Sbjct: 82  PTRELAIQVADACEQFTKNMKGVNVVTVYGG----QRYDIQLRALKQGSQVVVGTPGRIL 137

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIP-RTL 435
           D I+   L        +L   DE  R G    ++  + +        L +AT P P R +
Sbjct: 138 DHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRI 197

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               + D    KI         I      +N   +    L+ +  E   A  I  + +  
Sbjct: 198 TRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTG 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                         L E      A ++G M+   +E  +D  K+G   +L+AT V   GI
Sbjct: 258 TID--------ITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGI 309

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+   S+++  +      + +H++ GR GR       +L   P   +       ++K   
Sbjct: 310 DIERISLVVNFDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPI 368

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE---IARKDAKHILTQ 669
           D   I   ++   K  E    + S   +      E +  LLE    A +D + +   
Sbjct: 369 DEVAIPNHEILMAKRREKFKARVS--KQLEHHDLEKYRELLEDLFTADQDHEELAAA 423


>gi|15675334|ref|NP_269508.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|19746376|ref|NP_607512.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232]
 gi|71903810|ref|YP_280613.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71910967|ref|YP_282517.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94988830|ref|YP_596931.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94994657|ref|YP_602755.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
 gi|13622515|gb|AAK34229.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|19748574|gb|AAL98011.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS8232]
 gi|71802905|gb|AAX72258.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71853749|gb|AAZ51772.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94542338|gb|ABF32387.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94548165|gb|ABF38211.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
          Length = 539

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 125/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +       QA+++AP 
Sbjct: 25  SPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ +   + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   LIL  V        DE    G        +++       LL +AT P P + + + 
Sbjct: 135 KRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  +I  K      +    + +   ++     +++     +   +  +       
Sbjct: 195 FMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D+ 
Sbjct: 249 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR  +    I    P 
Sbjct: 307 GVTHVYNYDITQDPESYVHRI-GRTGRAGKSGESITFVSPN 346


>gi|21910615|ref|NP_664883.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28895696|ref|NP_802046.1| ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
 gi|21904817|gb|AAM79686.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28810945|dbj|BAC63879.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
          Length = 539

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 125/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +       QA+++AP 
Sbjct: 25  SPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ +   + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   LIL  V        DE    G        +++       LL +AT P P + + + 
Sbjct: 135 KRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  +I  K      +    + +   ++     +++     +   +  +       
Sbjct: 195 FMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D+ 
Sbjct: 249 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR  +    I    P 
Sbjct: 307 GVTHVYNYDITQDPESYVHRI-GRTGRAGKSGESITFVSPN 346


>gi|330468685|ref|YP_004406428.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328811656|gb|AEB45828.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
          Length = 566

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/354 (21%), Positives = 125/354 (35%), Gaps = 40/354 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           L  + +  PT  Q  AI  +L           + Q   G+GKT    + +   +      
Sbjct: 30  LSALGYEEPTPIQREAIGPLLAGRD------LLGQAATGTGKTAAFALPLLQRMPDERPT 83

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               A+++ P   LA Q  E   +Y ++    V  I G  P   + +AL         ++
Sbjct: 84  GDPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRAL----DNGVDVV 139

Query: 380 IGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT 429
           + T     D I    L        +L   DE    G  + +   L         +L +AT
Sbjct: 140 VATPGRALDHIARGTLRLGNLATVVLDEADEMLDMGFAEDIEAILEHTPEQRQTVLFSAT 199

Query: 430 PIPRTLVLTSLGDIDISKI----TEKPAGRKP-IKTVIIPINRIDEVIERLKVVLSEGKK 484
              R   +      D  +I     +  AG  P ++     + R  +     +V+  E   
Sbjct: 200 MPSRIDGMARAHLTDPVRILIAREQPVAGEAPRVRQSAYLVARAHKPAALGRVLDVESPT 259

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  +  +         R  V+R              +HG MS   ++ VM   + GT  L
Sbjct: 260 AAIVFCR--------SREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRGGTADL 311

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           L+AT V   G+DV   S ++  +      + +H++ GRVGR       I L  P
Sbjct: 312 LVATDVAARGLDVEQLSHVVNYDVPSAPESYVHRI-GRVGRAGREGVAITLAEP 364


>gi|326502382|dbj|BAJ95254.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 412

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 138/372 (37%), Gaps = 39/372 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ A+  I+           I Q   G+GKT +  +++   +E      QA+I++
Sbjct: 61  KPSAIQQRAVIPIITGRDV------IAQAQSGTGKTSMISLSVCQVIETNVHEVQALILS 114

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    ++       + V    G        + LE       H++ GT     D
Sbjct: 115 PTRELATQTERVMQAVGSFMSVSVHACVGGKSIGEDIRKLES----GVHVVSGTPGRVCD 170

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G + ++    +            P  + +++++ 
Sbjct: 171 MIKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLP---------PELQVVLISAT 221

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              DI +IT K     P++ ++       E I++  V +  E  K   +C   +      
Sbjct: 222 LPHDILEITSKFMT-DPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQ 280

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N +  V+           +++ +HG M   +++++M+ F+ GT ++LI T V   
Sbjct: 281 AVIFCNTKRKVDWLTERMRTNNFTVSAMHGDMPQKERDAIMNEFRGGTTRVLITTDVWAR 340

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV   S++I  +  +     +H++ GR GR       I        +           
Sbjct: 341 GLDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVRKDDIRILRDIEQYYST 399

Query: 614 TEDGFLIAEEDL 625
             D   +   DL
Sbjct: 400 QIDEMPMNVADL 411


>gi|241663607|ref|YP_002981967.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240865634|gb|ACS63295.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 493

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/374 (17%), Positives = 132/374 (35%), Gaps = 34/374 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q +AI  +            +     G+GKT    + +   +             
Sbjct: 35  KPTPIQAAAIPVVTAGRDV------MGAAQTGTGKTAGFSLPIIHNLLPDANTSASPARH 88

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q Y+ + KY + T +   ++ G +    + + L R       I++
Sbjct: 89  PVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRR----GVEILV 144

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  V          R+           ++       +TL+ ++ 
Sbjct: 145 ATPGRLLDHVQQRSVNLSQV-RMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSAT 203

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
              +I K+        P    +   N   E + ++   + +  K   +   ++++ E   
Sbjct: 204 FSPEIKKLAASYLRH-PQTIEVARSNATAENVRQVIYTVPDNHKQAALVHLLKQRAEQGL 262

Query: 499 --------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   N +    R     E    +   IHG  +  ++   +++FK GT  +L+AT V
Sbjct: 263 PRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGTVDVLVATDV 322

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+     +I  +        +H++ GR GR       + L+ P   +       +
Sbjct: 323 AARGLDISQMPCVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLFAPGDERLLADIEKL 381

Query: 611 LKNTEDGFLIAEED 624
           +K       +A+ D
Sbjct: 382 IKRNLPREQLADFD 395


>gi|295660379|ref|XP_002790746.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226281299|gb|EEH36865.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 408

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVLRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+       H++ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQ----HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 157 MIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 208 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQ 266

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 267 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 326

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 327 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTSE 371


>gi|219113561|ref|XP_002186364.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583214|gb|ACI65834.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 370

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/355 (20%), Positives = 136/355 (38%), Gaps = 36/355 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ AI+ I++          I Q   G+GKT V  ++    ++      Q +I++
Sbjct: 18  KPSAIQQRAIRPIIRGRDV------IAQSQSGTGKTAVFSVSSLQLLQENSRECQVLILS 71

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q  + ++       +      G         ALE    G   II GT     D
Sbjct: 72  PTRELAEQTQKVVQALGDFMNVHCHACIGGKSLGQDLNALE---KGGIQIISGTPGRVFD 128

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I+   L        IL   DE    G ++++    +    +  V+LM+AT     L +T
Sbjct: 129 LIRRNALSPNHLKAMILDEADEMLNRGFKEQIYDIYRFLPASTQVVLMSATLPASVLDMT 188

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
                D  +I  +      + I+   I + + +   + L  +       +A   C     
Sbjct: 189 RKFMNDPIRILVRRDELTLEGIRQFFINVEKEEWKFDTLCDLYDTLTITQAVIFCNT--- 245

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+      +    +++ +HG M    +++VM+ F++G+ ++LIAT +   G
Sbjct: 246 ------KQKVDWLAGKMKDKNFTVSAMHGDMDQGARDAVMEEFRSGSSRVLIATDLWGRG 299

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           IDV   S++I  +        +H++ GR GR       I       ++       
Sbjct: 300 IDVQQVSLVICYDLPTNRELYIHRI-GRSGRFGRKGIAINFVREEDTRLLRDIEQ 353


>gi|50303057|ref|XP_451466.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660682|sp|Q6CX73|FAL1_KLULA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49640597|emb|CAH03054.1| KLLA0A10659p [Kluyveromyces lactis]
          Length = 398

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 131/351 (37%), Gaps = 42/351 (11%)

Query: 270 PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAV 325
            F  P+  Q  AI  I+           I Q   G+GKT    I +  A+++     QA+
Sbjct: 42  GFEYPSSIQSRAISQIISGKDV------IAQAQSGTGKTATFTIGLLQAIDSKSKELQAL 95

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +++P   LA Q    I        +     TG        K + +       ++ GT   
Sbjct: 96  VLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK----NCQVVSGTPGR 151

Query: 386 FQDSIQY--------YKLILVIVDEQH--RFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             D I+           L+L   DE      G +Q++                 P  + +
Sbjct: 152 VLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFT---------KLPPTIQVV 202

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEE 494
           V+++    DI +IT+K     P+K ++      +D + +    V  E  K   +C   + 
Sbjct: 203 VVSATMSKDILEITKKFMS-DPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDS 261

Query: 495 KK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N R  V+  +        S++ +HG M   +++ VM+ F++G  ++LI+T
Sbjct: 262 LTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLIST 321

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            V   GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 322 DVWARGIDVQQISLVINYDIPDNLENYIHRI-GRSGRFGRKGVAINFITKE 371


>gi|315128153|ref|YP_004070156.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315016666|gb|ADT70004.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 432

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/395 (20%), Positives = 152/395 (38%), Gaps = 57/395 (14%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L ++ +S PT  Q  AI  IL           I   + GSGKT    + M   +    G 
Sbjct: 23  LSDLEYSQPTPIQAKAIPSILAG------SDLIAGANTGSGKTATFALPMLQTLFLAQGA 76

Query: 323 Q----------AVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALER 370
           +           +I+ P   LA Q  + +K Y+ N    I    + G +    + +AL  
Sbjct: 77  KKAASKGNFVTGLILVPTRELAVQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQALR- 135

Query: 371 IAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPH 422
              G A II+ T     D I        +   L+L   D     G  + L          
Sbjct: 136 ---GGADIIVATPGRLLDLISSNAIKLDKVSTLVLDEADRMLSLGFTEELA--------- 183

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            LL       +T++ ++     ++++T+K     P++  +   ++ +  + +    +++G
Sbjct: 184 ELLALMPAKKQTMLFSATFPEQVTQLTQK-LLTNPVEIQV--QSKDESTLVQRVFTVNKG 240

Query: 483 KKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           +K   +   I++ K        N +   E   S  E    +  + HG     ++  V++ 
Sbjct: 241 EKTTVLAHLIKQHKWRQALIFVNAKKDCEHLASKLEKRGVNAQVFHGDKGQSERTRVIEK 300

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL- 595
           FK G  ++LIAT +   G+D+    ++I  N        +H++ GR GR  E+   + L 
Sbjct: 301 FKAGEIEVLIATDIAARGLDIEKLPVVINFNLPRSPADYMHRI-GRSGRAGEVGLALSLI 359

Query: 596 ----YHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626
               +H         +L + +    GF + + +L 
Sbjct: 360 DYDDFHHFRIIEKKNKLRLEREEVTGFAVNQGNLD 394


>gi|296817029|ref|XP_002848851.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480]
 gi|302506162|ref|XP_003015038.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371]
 gi|238839304|gb|EEQ28966.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480]
 gi|291178609|gb|EFE34398.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371]
 gi|326469057|gb|EGD93066.1| eukaryotic initiation factor 4A-12 [Trichophyton tonsurans CBS
           112818]
 gi|326480615|gb|EGE04625.1| eukaryotic initiation factor 4A-12 [Trichophyton equinum CBS
           127.97]
          Length = 399

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVLRESQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + LE       H++ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEHGQ----HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 157 MIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 208 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQ 266

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 267 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 326

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 327 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTSE 371


>gi|170091668|ref|XP_001877056.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648549|gb|EDR12792.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 396

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 129/344 (37%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AI  I Q          I Q   G+GKT    I++  +++      QA++++
Sbjct: 45  KPSAIQQRAILPITQGRDV------IAQAQSGTGKTATFSISILQSIDVTVRETQALVLS 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + LE       H++ GT     D
Sbjct: 99  PTRELATQIQSVVLALGDYMNVQCHACIGGTSIGEDIRKLEYGQ----HVVSGTPGRVFD 154

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G + ++    +            P  + ++L++ 
Sbjct: 155 MIRRRSLRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLP---------PATQVILLSAT 205

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+ ++T K     PI+ ++       E I++  V +  E  K   +C   +      
Sbjct: 206 LPYDVLEMTTKFMT-DPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLTITQ 264

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++++M  F+ GT ++LI T V   
Sbjct: 265 AVIFCNTRRKVDWLTEKMRASNFTVSSMHGEMVQKERDAIMAEFRGGTSRVLITTDVWAR 324

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GIDV   S++I  +        +H++ GR GR       I    
Sbjct: 325 GIDVQQVSLVINYDLPANRENYIHRI-GRSGRFGRKGVAINFVT 367


>gi|134296504|ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134139661|gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 512

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/364 (19%), Positives = 126/364 (34%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 55  TPTPIQAQAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPHASTSASPARH 108

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 109 PVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQMAELRR----GVEILI 164

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 165 ATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 224

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    +    +  ++  +   D+    ++++   G K   +
Sbjct: 225 SPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRGRGLKQVIV 284

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      + IHG  S I++   +D+FK G  + L+AT
Sbjct: 285 F--------CNSKIGASRLARNLERDGVVASAIHGDKSQIERMQALDAFKRGEIEALVAT 336

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 337 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGATGDALSLCSPNERKQLADIE 395

Query: 609 SVLK 612
            ++K
Sbjct: 396 KLIK 399


>gi|77361885|ref|YP_341460.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76876796|emb|CAI88018.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 434

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 87/424 (20%), Positives = 160/424 (37%), Gaps = 59/424 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA--VEAGG 322
           L ++ ++ PT  Q  AI  +L           I   + GSGKT    + +     +E G 
Sbjct: 23  LTDLEYTQPTPIQAKAIPSVLAG------SDLIAGANTGSGKTATFALPILQKMFLEQGS 76

Query: 323 Q----------AVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALER 370
           +           +I+ P   LA Q  + +K Y+ N    I    + G +    + +AL  
Sbjct: 77  KSAASKGNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTIAVFGGVSVNTQMQALR- 135

Query: 371 IAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
              G A II+ T     D     +I+  KL  +++DE  R        L+   T     L
Sbjct: 136 ---GGADIIVATPGRLLDLISSNAIKLDKLNTLVLDEADRM-------LSLGFTEELAEL 185

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           +   P  +  +L S    +  K+  +     P++  +   ++ +  + +    +++G+K 
Sbjct: 186 LALMPAKKQTMLFSATFPEQVKLLTQDLLNDPVEIQV--QSKDESTLVQRVFSVNKGEKT 243

Query: 486 YWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +   I+  K        N +   E      E    +  + HG     ++  V++ FK 
Sbjct: 244 TVLAHLIKTHKWRQALIFVNAKKDCEHLAQKLEKRGVNAQVFHGDKGQSERTRVIEKFKA 303

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY--- 596
           G  ++LIAT +   G+D+    ++I  N        +H++ GR GR  E+   + L    
Sbjct: 304 GEIEVLIATDIAARGLDIEKLPVVINFNLPRSPADYMHRI-GRSGRAGEVGLALSLVDYE 362

Query: 597 --HPPLSKNSYTRLSVLKNTEDGFLI------AEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
             H         +L + +    GF +      A + LK  K   +   + +G  K   A 
Sbjct: 363 DLHHFKIIEKKNKLRLEREQVAGFAVNQANVDAAQALKNEKP--MAKPEGTGKKKNKKAD 420

Query: 649 PELH 652
            E  
Sbjct: 421 LEDD 424


>gi|284006674|emb|CBA71936.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase)
           [Arsenophonus nasoniae]
          Length = 615

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 59/443 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L ++ +  P+  Q+  I  +L           +     GSGKT    + +   ++     
Sbjct: 27  LNDLGYEKPSPIQQQCIPYLLDG------CDVLGMAQTGSGKTAAFSLPLLHNIDITLKA 80

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E + +++++ + + V  + G      + +AL +       I++
Sbjct: 81  PQILVLAPTRELAVQVAEAMGEFSKHMRSVNVVALYGGQRYDSQLRALRQ----GPQIVV 136

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-I 431
           GT     D ++           L+L   DE  R G  + ++            M+  P  
Sbjct: 137 GTPGRLLDHLKRGTLNLSHLRGLVLDEADEMLRMGFIEDVENI----------MSQIPSE 186

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICP 490
            +T + ++     I +IT +        ++   +    ++ +    V      +A     
Sbjct: 187 HQTALFSATMPEAIRRITRRFMKSPKEISIQSSVTTRPDITQSYWSVYGMRKNEALVRFL 246

Query: 491 QIEEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           + E+            + +E   +L     +S + ++G M+   +E  ++  K+G   +L
Sbjct: 247 EAEDFDAAIIFVRTKNATLEVAEALERSGYNS-SALNGDMNQALREQTLERLKDGRLDIL 305

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           IAT V   G+DV   S+++  +      + +H++ GR GR       IL       +   
Sbjct: 306 IATDVAARGLDVERISLVVNYDIPMDAESYVHRI-GRTGRAGRAGRAILFVDNRERRLLR 364

Query: 606 TRLSVLKNTEDGFLIA-----EEDLKQRKEGEILGIKQSGMPK-------FLIAQPELH- 652
                +K       +       E  + +    I    +SG  +        L+A  EL  
Sbjct: 365 NIERTMKQPITEVELPSAAVLSERRQAKFAENIQKQLESGDLEKYRALLTKLVANDELDM 424

Query: 653 ----DSLLEIARKDAKHILTQDP 671
                +LL++A+ D   IL  DP
Sbjct: 425 ETLASALLKMAQGDRPLILPPDP 447


>gi|66805957|ref|XP_636700.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
 gi|74896924|sp|Q54IV3|DDX42_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx42; AltName:
           Full=DEAD box protein 42
 gi|60465098|gb|EAL63199.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
          Length = 986

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 141/381 (37%), Gaps = 45/381 (11%)

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            +  + Q I +    +PT  Q+ AI   L           I     GSGKT   +    +
Sbjct: 312 FDDILLQAIAKQSIETPTPIQKQAIPIALSGRD------LIAIAKTGSGKTATFIWPSIS 365

Query: 317 AVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
            +          G  A+ +AP   LA Q Y    KY++  ++   ++ G + +  + K L
Sbjct: 366 HIMDQPYLEKGDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKEL 425

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQK-A 418
           +        II+ T     D I+           L+L   D+   FG   Q L +     
Sbjct: 426 KAGCE----IIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVR 481

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG------RKPIKTVIIPINRIDEVI 472
                LL +AT  P           D  KI+    G       + ++ +    ++ + + 
Sbjct: 482 PDRQTLLFSATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLT 541

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
            +L ++LS+G    ++  ++           VE+ +S    F      +HG  + I++  
Sbjct: 542 NQLALLLSQGSVLIFVSTKV----------AVEQLSSNLTKFGFQTCTLHGDKNQIERSQ 591

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            + +FK G   +LIAT V   G+D+     ++  +      +  H++ GR GR       
Sbjct: 592 TIQTFKEGKINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRI-GRTGRAGNTGVA 650

Query: 593 ILLYHPPLSKNSYTRLSVLKN 613
             L  P     S   +  L++
Sbjct: 651 YTLITPKDIHFSVDLIKNLES 671


>gi|254517068|ref|ZP_05129126.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
 gi|219674573|gb|EED30941.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
          Length = 609

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/340 (21%), Positives = 135/340 (39%), Gaps = 35/340 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q   I  +L+          + Q   G+GKT    + + A ++   +  QA+++A
Sbjct: 30  TPSAIQTMTIPPLLEGKD------LVGQAQTGTGKTAAFALPILARLDPKLSKPQALVLA 83

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY +++    V  I G      + + LER      H+I+GT     
Sbjct: 84  PTRELAIQVAEAFQKYARHSKGFKVLPIYGGSDYRTQLRQLER----GVHVIVGTPGRVM 139

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP--RTL 435
           D ++   L        +L   DE  R G    ++    Q      + L +AT     R +
Sbjct: 140 DHMRRGSLNLSALTTLVLDEADEMLRMGFIDDVEWILEQTPPKRQIALFSATMPDAIRRI 199

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L   +   I  K      I+  +  +  + ++    +++ +E      I  +    
Sbjct: 200 AKQHLNKPEEITIKLKTVTNASIRQRVWMMGGMHKLDALTRILETEDTDGVIIFVR---- 255

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                 +  E  + L     ++ A+ +G ++   +E  +++ K G   +LIAT V   G+
Sbjct: 256 ---TRIATQELADKLSARGYATAAL-NGDIAQNQREKTVENLKKGGLDILIATDVAARGL 311

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           DV   S +I  +  +   A +H++ GR GR       IL 
Sbjct: 312 DVERISHVINYDIPNDPEAYVHRI-GRTGRAGRTGEAILF 350


>gi|163738737|ref|ZP_02146151.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
 gi|161388065|gb|EDQ12420.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
          Length = 713

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/393 (21%), Positives = 147/393 (37%), Gaps = 43/393 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------- 323
            T  QE+     L      ++   ++    GSGKT+   +AMA  +    +         
Sbjct: 31  LTPVQEAVTAAEL------DQSDLLVSAQTGSGKTVGFGLAMAPTLLGDAEKLDRADLPL 84

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LA Q    +          V    G M     R+ALER     AHI++ T 
Sbjct: 85  ALVIAPTRELALQVKRELGWLYAEAGAHVVSTVGGMDMRDERRALER----GAHIVVATP 140

Query: 384 ALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
              +D I            ++L   DE    G ++ L+     +             RTL
Sbjct: 141 GRLRDHIMRGSINLSQVRAVVLDEADEMLDLGFREDLEFILGESPED---------RRTL 191

Query: 436 VLTSLGDIDISKITEKPA-GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + ++     I+++ E      + IKTV       D   + L V   + + A     +  E
Sbjct: 192 MFSATVPTGIARLAETYLKDHQRIKTVAEASQHADIEYQMLAVAQRDVENAVINVLRFHE 251

Query: 495 KKE----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   N R+VV R  +   +   S+  + G +S  ++ + + S ++G  ++ +AT V
Sbjct: 252 SPNAIVFCNTRAVVNRMTTRLSNRGFSVVALSGELSQAERSNALQSLRDGRARVCVATDV 311

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GID+    ++I  +        LH+  GR GR        L+  P     +   L  
Sbjct: 312 AARGIDLPKLDLVIHADLPSSHETLLHR-SGRTGRAGRQGVSALIVPPKAKGKALRLLRS 370

Query: 611 LKNT-EDGFLIAEEDLKQRKEGEILGIKQSGMP 642
            K T E     + +D++ R    +LG K    P
Sbjct: 371 AKITAETSPAPSADDVRTRDFERLLGDKAWSEP 403


>gi|163741552|ref|ZP_02148943.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
 gi|161385286|gb|EDQ09664.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
          Length = 718

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/393 (21%), Positives = 147/393 (37%), Gaps = 43/393 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------- 323
            T  QE+     L      ++   ++    GSGKT+   +AMA  +    +         
Sbjct: 31  LTPVQEAVTAAEL------DQSDLLVSAQTGSGKTVGFGLAMAPTLLGDAEKLDRADLPL 84

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LA Q    +          V    G M     R+ALER     AHI++ T 
Sbjct: 85  ALVIAPTRELALQVKRELGWLYAEAGAHVVSTVGGMDMRDERRALER----GAHIVVATP 140

Query: 384 ALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
              +D I            ++L   DE    G ++ L+     +             RTL
Sbjct: 141 GRLRDHIMRGSINLSQVRAVVLDEADEMLDLGFREDLEFILGESPED---------RRTL 191

Query: 436 VLTSLGDIDISKITEKPA-GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           + ++     I+++ E      + IKTV       D   + L V   + + A     +  E
Sbjct: 192 MFSATVPTGIARLAETYLKDHQRIKTVAEASQHADIEYQMLAVAQRDVENAVINVLRFHE 251

Query: 495 KKE----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   N R+VV R  +   +   S+  + G +S  ++ + + S ++G  ++ +AT V
Sbjct: 252 SPNAIVFCNTRAVVNRMTTRLSNRGFSVVALSGELSQAERSNALQSLRDGRARVCVATDV 311

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GID+    ++I  +        LH+  GR GR        L+  P     +   L  
Sbjct: 312 AARGIDLPKLDLVIHADLPSSHETLLHR-SGRTGRAGRQGVSALIVPPKAKGKALRLLRS 370

Query: 611 LKNT-EDGFLIAEEDLKQRKEGEILGIKQSGMP 642
            K T E     + +D++ R    +LG K    P
Sbjct: 371 AKITAETSPAPSADDVRTRDFERLLGDKAWSEP 403


>gi|217973860|ref|YP_002358611.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217498995|gb|ACK47188.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 451

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 135/388 (34%), Gaps = 42/388 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ ++ Q I       PT  QE A+   L           +     GSGKTL  L+  
Sbjct: 6   FSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKD------LMASSKTGSGKTLAFLLPA 59

Query: 315 AAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              V       +   + +I+ P   LA Q Y  ++    NTQ     + G      + KA
Sbjct: 60  LQRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKAT 419
           L +    + H I+ T     D ++   L        +L   D     G   +LK    A 
Sbjct: 120 LAK----EPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAA 175

Query: 420 AP---HVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  L+ +AT        +  T L +     I    +    I   I   + +D    
Sbjct: 176 DHKRRQTLMFSATLDHYEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEA 235

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L  +L +      I            R   ER  +       + A + G +    +  +
Sbjct: 236 LLARLLKDETHKQVIIFT-------ATRPDTERLAAKLIEQGFATAALSGDLKQAARNQI 288

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           MD F  G  ++L+ T V   G+D+++ S+++  +   F    +H++ GR GR       I
Sbjct: 289 MDQFARGQQQVLVTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRI-GRTGRAGAKGDAI 347

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            L  P    N       L+ T   F I+
Sbjct: 348 SLVGPKDWDNFKKVQVFLRKT---FEIS 372


>gi|47121785|gb|AAT11555.1| vasa-like protein [Copidosoma floridanum]
 gi|47175561|gb|AAT12450.1| vasa protein [Copidosoma floridanum]
          Length = 708

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 134/359 (37%), Gaps = 43/359 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAG--- 321
           PT  Q+  I  +L           +     GSGKT   LI +   +        + G   
Sbjct: 303 PTPIQKHGIPIVLAGRD------LMGCAQTGSGKTAAFLIPIIHNLLLKPREINDMGSLS 356

Query: 322 ---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               +A+I+AP   LA Q ++  +K+++++ +   +I G     H+ K +         +
Sbjct: 357 TVEPRALILAPTRELAIQIHDECRKFSKDSVLKCCLIYGGTAVGHQLKQIFY----GCDL 412

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T    +D      + +  +  +++DE  R      +   +         MT     +
Sbjct: 413 LVATPGRLKDFVGRGKVVFSAIEYLVLDEADRMIDMGFIGDVEMVIRHET--MTPPGERQ 470

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++    DI ++  K      I   +  +      IE+  + + +  K   +   +E
Sbjct: 471 TLMFSATFPRDIQELAVKFLN-NYIFVAVGIVGSACSDIEQSFLEVKKSDKRSKLKEILE 529

Query: 494 EKKESN----------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           E++ ++           +   +   +           IHG     ++E  ++ FK+G   
Sbjct: 530 EERNNDTLKGILVFVDQKRTADFIAAFLSDNNFPTTSIHGDRLQREREEALNDFKSGRMC 589

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           +L+AT V   G+D+ +   +I  +        +H++ GR GR       +  Y   +  
Sbjct: 590 ILVATAVAARGLDIKNVRFVINFDLPKEIDEYIHRI-GRTGRVGNKGKAVSFYDESIDN 647


>gi|171847136|gb|AAI61525.1| LOC549577 protein [Xenopus (Silurana) tropicalis]
          Length = 678

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 126/349 (36%), Gaps = 36/349 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
             T  Q+ +I  IL           +     GSGKT   L+ + + +   G         
Sbjct: 274 KLTPVQKHSIPIILAGRD------LMACAQTGSGKTAAFLLPILSHMMNEGITASQFLPL 327

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              QA+I+AP   L  Q Y   +K++  T +   ++ G +   H  + +ER  +    I+
Sbjct: 328 QEPQAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIHPVHAMRDVERGCN----IL 383

Query: 380 IGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
             T     D      I   KL  +++DE  R        + +         M A    +T
Sbjct: 384 CATPGRLMDIIGREKIGLSKLKYLVLDEADRMLDMGFAPVMENLIGSP--GMPAKEERQT 441

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE- 493
           L+ ++    +I ++  K      +  V+  +      +E+  + + E +K   +   ++ 
Sbjct: 442 LMFSATYPAEIQRLASKFLKSDHLFVVVGLVGGACSDVEQTILEIQEYRKRDKLVEILQS 501

Query: 494 -----EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +   +               IHG      +E  +  F++G C +++ T
Sbjct: 502 SGNERTMIFVNTKKKADVIAGYLCQEHFPTTSIHGDREQCQREEAIRDFRSGKCPVIVCT 561

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            V   G+D+ +   +I  +        +H++ GR GR   +      ++
Sbjct: 562 AVAARGLDIENVQHVINYDVPKEIDEYVHRI-GRTGRCGNVGKATSFFN 609


>gi|154308886|ref|XP_001553778.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10]
 gi|160385734|sp|A6S4N4|FAL1_BOTFB RecName: Full=ATP-dependent RNA helicase fal1
 gi|150852597|gb|EDN27789.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10]
          Length = 399

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+       HI+ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HIVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 157 MIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 208 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQ 266

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 267 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 326

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 327 GIDVQQVSLVINYDLPVNRENYIHRI-GRSGRFGRKGVAINFVTSE 371


>gi|308810851|ref|XP_003082734.1| putative ethylene-responsive RNA helicase (ISS) [Ostreococcus
           tauri]
 gi|116061203|emb|CAL56591.1| putative ethylene-responsive RNA helicase (ISS) [Ostreococcus
           tauri]
          Length = 682

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/428 (19%), Positives = 166/428 (38%), Gaps = 47/428 (10%)

Query: 218 FEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI---PFS-P 273
            E  + AR  LA +E    ++ + + R        +    E      +  ++    F  P
Sbjct: 24  VEHPATARRSLAENEGTMKRMEIRVTRGGVDAPKCVLTFTEASFPSYVTEDLLREKFEAP 83

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAV 325
           + +Q  A    L           +   + GSGKTL  ++     V A        G  A+
Sbjct: 84  SAAQSLAWPSALSGRDV------VAVAETGSGKTLAYVLPAIVHVNAQPVLAPGEGPIAL 137

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q    + KY  ++Q+    + G  P+  + KAL+    G+  I + T   
Sbjct: 138 VLAPTRELACQIELEVAKYAASSQLKHACVYGGAPKGPQVKALK---SGECEICVATPGR 194

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATP----- 430
             D ++           ++L   D     G + +++    Q       LL TAT      
Sbjct: 195 LIDFLERGVTNLRRTTFVVLDEADRMLDMGFEPQIRRIVSQTRPDRQTLLFTATWPVEVR 254

Query: 431 -IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWI 488
            I RTLV  +  +  +S   +     K ++ ++  +N   ++  E+L   L        +
Sbjct: 255 EIARTLVRNNPVEFRVSGAGDSLLASKNVEQIVHVMNGDEEDKYEKLIETLEREMDGERL 314

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +E K   +          L      ++ + HG     +++ V+  FK+G+  ++IAT
Sbjct: 315 LVFVETKASVD-----ALTRKLRVGGWPALGL-HGDKEQKERDWVLSEFKSGSSPIMIAT 368

Query: 549 TVIEVGIDVVDASIIIIENAEHFG--LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
            V   G+DV    +++  +  + G     +H++ GR GR   +   +  +     +++  
Sbjct: 369 DVASRGLDVEGVKLVVNYDFPNRGGVEEYVHRI-GRTGRAGRLGKSVTFFTIRDGRHARG 427

Query: 607 RLSVLKNT 614
            + VL+++
Sbjct: 428 LVDVLRSS 435


>gi|62857341|ref|NP_001016823.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Xenopus (Silurana)
           tropicalis]
 gi|89273979|emb|CAJ82187.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Xenopus (Silurana)
           tropicalis]
 gi|163916608|gb|AAI57773.1| hypothetical protein LOC549577 [Xenopus (Silurana) tropicalis]
          Length = 647

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 126/349 (36%), Gaps = 36/349 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
             T  Q+ +I  IL           +     GSGKT   L+ + + +   G         
Sbjct: 243 KLTPVQKHSIPIILAGRD------LMACAQTGSGKTAAFLLPILSHMMNEGITASQFLPL 296

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              QA+I+AP   L  Q Y   +K++  T +   ++ G +   H  + +ER  +    I+
Sbjct: 297 QEPQAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIHPVHAMRDVERGCN----IL 352

Query: 380 IGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
             T     D      I   KL  +++DE  R        + +         M A    +T
Sbjct: 353 CATPGRLMDIIGREKIGLSKLKYLVLDEADRMLDMGFAPVMENLIGSP--GMPAKEERQT 410

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE- 493
           L+ ++    +I ++  K      +  V+  +      +E+  + + E +K   +   ++ 
Sbjct: 411 LMFSATYPAEIQRLASKFLKSDHLFVVVGLVGGACSDVEQTILEIQEYRKRDKLVEILQS 470

Query: 494 -----EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +   +               IHG      +E  +  F++G C +++ T
Sbjct: 471 SGNERTMIFVNTKKKADVIAGYLCQEHFPTTSIHGDREQCQREEAIRDFRSGKCPVIVCT 530

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            V   G+D+ +   +I  +        +H++ GR GR   +      ++
Sbjct: 531 AVAARGLDIENVQHVINYDVPKEIDEYVHRI-GRTGRCGNVGKATSFFN 578


>gi|167918160|ref|ZP_02505251.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BCC215]
          Length = 414

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 125/368 (33%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAKAIPVVLSGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    A    +  ++  +   D+    +K++     K   +
Sbjct: 203 SPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      A IHG  S  ++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 373

Query: 609 SVLKNTED 616
            ++K T  
Sbjct: 374 KLIKRTLS 381


>gi|15836797|ref|NP_297485.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
 gi|9104994|gb|AAF83005.1|AE003873_2 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
          Length = 446

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 132/375 (35%), Gaps = 36/375 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q+ AI   L           +     G+GKT    + +   + A          +A
Sbjct: 24  PTPIQQQAIPLALAGHD------LLAAAQTGTGKTAAFGLPVLQRLMAASSNVGAGKPRA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q Y+ ++ Y +  ++   +I G +   ++   L R       ++I    
Sbjct: 78  LVLTPTRELATQVYDSLRGYAKYQRVSSAVIYGGVGMGNQLDVLRR----GVDLLIACPG 133

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D I+   + L  V         + L +    +   +L        +TL+ ++     
Sbjct: 134 RLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQNRQTLLFSATFAEP 193

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI------EEKKES 498
           I ++       +P + ++   N + E I      +   +K   +   +      +     
Sbjct: 194 IKQLA-LEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLHLLAQDSREQTLVFV 252

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +   ++  +  E +    A IHG  +   +   ++SFK G   +L+AT +   GID+ 
Sbjct: 253 RTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLVATDIAARGIDID 312

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
               +I  +        +H++ GR GR       I L     +K     + +L       
Sbjct: 313 QLPKVINYDLPMVAEDYVHRI-GRTGRNGVQGEAISLVTQEDAKLLRQIVRLL------- 364

Query: 619 LIAEEDLKQRKEGEI 633
              + D+  R   + 
Sbjct: 365 ---DRDMDIRDVPDF 376


>gi|120556730|ref|YP_961081.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120326579|gb|ABM20894.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 443

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 131/360 (36%), Gaps = 37/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------GGQAV 325
           +P+  Q+ AI  +L           +     G+GKT    + +   +        G +A+
Sbjct: 23  TPSPIQQQAIPAVLSGKDV------MAAAQTGTGKTAGFTLPLLQRLAENPRTGKGPRAL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q ++ +  Y++       ++ G +    +   L +       +++ T   
Sbjct: 77  ILTPTRELAAQVHDSVNLYSKYVPTKAAVVFGGVKINPQMMKLRK----GLDVLVATPGR 132

Query: 386 FQD-----SIQYYKLILVIVDEQHRFGV-----QQRLKLTQKATAPHVLLMTAT--PIPR 433
             D     ++++ ++ ++++DE  R          R  L         LL +AT     R
Sbjct: 133 LMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQNLLFSATFSNEIR 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL    L +    ++  +    + +K  + P+++  +     K+V         +  +  
Sbjct: 193 TLAQGLLDNPVQVEVAARNTTAEKVKQSVYPVDQSQKTALLSKLVRDNAWDQVLVFTRT- 251

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     E    + A IHG  S   +   +  FK G  ++L+AT +   
Sbjct: 252 -------KHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVLVATDIAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++     +     +H++ GR GR  E    + L      K       ++K 
Sbjct: 305 GLDIKQLPQVVNFELPNVPEDYVHRI-GRTGRAGESGHALSLVSADEGKLLAGIEKLIKK 363


>gi|331214536|ref|XP_003319949.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Puccinia
            graminis f. sp. tritici CRL 75-36-700-3]
 gi|309298939|gb|EFP75530.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Puccinia
            graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1329

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 151/411 (36%), Gaps = 45/411 (10%)

Query: 229  AYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL--RNIPF-SPTKSQESAIKDIL 285
               E +   +  + +R Q   +  +  +  G  A  +   +++ + SPT  Q  A+  I+
Sbjct: 626  EQAENIRIAMDGIKIRGQDCPKPVMKWSWFGLHAACLEVVKSLGYQSPTPIQGQAVPAIM 685

Query: 286  QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQH 337
                       I     GSGKTL  L+ M   ++         G  A+IM P   LA Q 
Sbjct: 686  SGRDV------IGVAKTGSGKTLAFLLPMFRHIKDQRPLDALEGPIAMIMTPTRELATQI 739

Query: 338  YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS-------- 389
            Y+  + + ++  +      G  P       ++R     A +I+ T     +         
Sbjct: 740  YKEGRPFLKSLGLRAACAYGGSPLKDNIADMKR----GAEVIVCTPGRMIELLTTNSGRV 795

Query: 390  IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
            I   ++  +++DE  R           K            P  +T++ ++     +  + 
Sbjct: 796  INMRRVTYLVLDEADRMFDMGFEPQVMKIVNQIR------PDRQTVLFSATFPKQMEALA 849

Query: 450  EKPAGRKPIKTV---IIPINRIDEVIERLKVVLSEGKKAYWI---CPQIEEKKESNFRSV 503
             K   R    TV    +  + I++++E  +      +    +     +  E +   F   
Sbjct: 850  RKILRRPLEITVGGRSVVASEIEQIVEVRQDSTKFNRLLEILGRSYNEDSESRSLVFVDR 909

Query: 504  VERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
             E  ++L             +HG    +D++ V+  FK+G   ++IAT+V   G+DV   
Sbjct: 910  QESADNLFRDLLKKGYPCLSLHGGKEQVDRDQVIADFKSGVTPIVIATSVAARGLDVKQL 969

Query: 561  SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             ++I  +A +     +H+  GR GR     +CI    P   + +   L  L
Sbjct: 970  KLVINYDAPNHMEDYVHR-AGRTGRAGNKGTCITFIAPDQERYAVDLLRAL 1019


>gi|302388236|ref|YP_003824058.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302198864|gb|ADL06435.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 471

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 139/360 (38%), Gaps = 40/360 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------Q 323
           PT  QE AI  IL           +     G+GKT    I     +             +
Sbjct: 24  PTPIQEEAIPVILSGRD------LLGCAQTGTGKTAAFAIPTIQLLREEKESHGAKQNIR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q YE    Y + T +   ++ G + Q  + + L++    +  I++ T 
Sbjct: 78  ALIVTPTRELALQIYESFNTYGKFTDLKCCVVFGGVSQKPQEEKLKQ----RVDILVATP 133

Query: 384 ALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
                   Q  +    + ++I+DE  R      +   +K       ++  TP   +TL+ 
Sbjct: 134 GRLLALIDQKIVNIDHIKILILDEADRMLDMGFIHDVKK-------IIARTPLKKQTLLF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++    DI+K+      + P K  I P++   + I +    + +  K   +   +++   
Sbjct: 187 SATMPPDIAKLAGT-ILKAPAKIEITPVSSTVDTIGQYVYFVDKSNKKDLLLHVLKDNNI 245

Query: 497 -----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                 +  +   +R N            IHG  S   ++S +++FKN + ++LIAT + 
Sbjct: 246 VSALVFTRTKHGADRLNKQLSRNNVIAQAIHGDKSQGARQSALNNFKNKSLRILIATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ + + +I  +        +H++ GR GR     + I        +       ++
Sbjct: 306 ARGIDIDELTHVINYDLPDIPETYVHRI-GRTGRAGLGGTAISFCDYDEKEQLNDIERLI 364


>gi|187929488|ref|YP_001899975.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12J]
 gi|187726378|gb|ACD27543.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
          Length = 493

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 131/374 (35%), Gaps = 34/374 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q +AI  +            +     G+GKT    + +   +             
Sbjct: 35  KPTPIQAAAIPVVTAGHDV------MGAAQTGTGKTAGFSLPIIHNLLPDANTSASPARH 88

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q Y+ + KY + T +   ++ G +    + + L R       I++
Sbjct: 89  PVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRR----GVEILV 144

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  V          R+           ++       +TL+ ++ 
Sbjct: 145 ATPGRLLDHVQQRSVNLSQV-RMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSAT 203

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
              +I ++        P    +   N   E + ++   + +  K   +   + ++ E   
Sbjct: 204 FSPEIKRLAASYLRH-PQTIEVARSNATAENVRQVIYTVPDNHKQAALVHLLRQRAEQGL 262

Query: 499 --------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   N +    R     E    +   IHG  +  ++   +++FK GT  +L+AT V
Sbjct: 263 PRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGTVDVLVATDV 322

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+     +I  +        +H++ GR GR       + L+ P   +       +
Sbjct: 323 AARGLDISQMPCVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLFAPGDERLLADIEKL 381

Query: 611 LKNTEDGFLIAEED 624
           +K       +A+ D
Sbjct: 382 IKRNLPREQLADFD 395


>gi|159478699|ref|XP_001697438.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158274317|gb|EDP00100.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 515

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/382 (17%), Positives = 135/382 (35%), Gaps = 50/382 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q   +   L           +   + GSGKT    I M              G  
Sbjct: 135 TPTPIQAQGLPIALSGRD------ILGCAETGSGKTASFSIPMIQHCLNQQPLRAGDGPM 188

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           A+++AP   LAQQ    +K +++++   +   I+ G +P   +R  L         +++ 
Sbjct: 189 ALVLAPTRELAQQIEREVKAFSRSSGRSVRTSIVVGGVPMHEQRHDLRN----GVEVVVA 244

Query: 382 THALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T   F D +Q       ++  V++DE  R          ++            P  +TL+
Sbjct: 245 TPGRFIDHLQQGNTNLGRISYVVLDEADRMLDMGFEPQIKEVMNN------LPPKHQTLL 298

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I ++       KP+   I  ++     + +      E +K   +   I  + 
Sbjct: 299 FSATMPKEIEELARAYLN-KPVTVKIGAVSTPTANVSQRLEHAPEPQKLDILVALISAEV 357

Query: 497 ES---------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            +                 ++  +   +       +   +HG ++  ++E+ +  F  G 
Sbjct: 358 AAEAAGGPPMPLTIVFVERKTRCDEVAAALREDGINANALHGGLNQNEREAALRDFAKGD 417

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            K+L+AT V   G+D+     +I  +        +H++ GR GR         L++   S
Sbjct: 418 IKVLVATDVASRGLDIKGIGHVINMDLPKTFEDYVHRI-GRTGRAGTKGRATSLWNDRDS 476

Query: 602 KNSYTRLSVLKNTE--DGFLIA 621
                    L   E  +GF  A
Sbjct: 477 YLVAQIKQALSELEKGNGFAFA 498


>gi|162458395|ref|NP_001105396.1| translational initiation factor eIF-4A [Zea mays]
 gi|2341061|gb|AAB67607.1| translational initiation factor eIF-4A [Zea mays]
          Length = 414

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/341 (19%), Positives = 127/341 (37%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 63  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 116

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 117 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS----GVHVVVGTPGRVFD 172

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L +T
Sbjct: 173 MLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEIT 232

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ D  ++ L          Y      +   
Sbjct: 233 RKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTL-------CDLYETLAITQSVI 285

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 286 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 345

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   S++I  +        LH++ GR GR       I    
Sbjct: 346 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVT 385


>gi|251782861|ref|YP_002997164.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391491|dbj|BAH81950.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 539

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 125/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +       QA+++AP 
Sbjct: 25  SPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ +   + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   LIL  V        DE    G        +++       LL +AT P P + + + 
Sbjct: 135 KRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  +I  K      +    + +   ++     +++     +   +  +       
Sbjct: 195 FMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D+ 
Sbjct: 249 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR  +    I    P 
Sbjct: 307 GVTHVYNYDITQDPESYVHRI-GRTGRAGKSGESITFVSPN 346


>gi|210614158|ref|ZP_03290078.1| hypothetical protein CLONEX_02291 [Clostridium nexile DSM 1787]
 gi|210150802|gb|EEA81810.1| hypothetical protein CLONEX_02291 [Clostridium nexile DSM 1787]
          Length = 530

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 127/370 (34%), Gaps = 40/370 (10%)

Query: 262 AQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
            QK ++ + F   +  Q  AI  IL+          I Q   G+GKT    I +   V+ 
Sbjct: 15  IQKAVKYMGFEEASPIQAKAIPVILEGKD------IIGQAQTGTGKTAAFGIPLLQKVDP 68

Query: 321 GG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQA 376
                Q +++ P   LA Q  + I+   +    I V  I G      + ++L+       
Sbjct: 69  KNKKLQGIVLCPTRELAIQVADEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKS----GT 124

Query: 377 HIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            IIIGT     D ++         + ++L   DE    G ++ ++               
Sbjct: 125 QIIIGTPGRVMDHMRRKTIKMDQVHTVVLDEADEMLNMGFREDIETILSGVPEE------ 178

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +T++ ++     I +IT+K   +      +         IE+    +    K   +
Sbjct: 179 ---RQTVLFSATMPKAIMEITKKF-QKNAQMVKVTKKELTVPNIEQFYYEVRPKNKEEVL 234

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              ++           N +  V+   +         A +HG M    ++ VM  F++G  
Sbjct: 235 TRLLDIYTPKLSVIFCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKT 294

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   GIDV +   +   +        +H++ GR GR   +             
Sbjct: 295 DILVATDVAARGIDVDEVEAVFNYDLPQDDEYYVHRI-GRTGRAGRVGRSFSFVSGKEVY 353

Query: 603 NSYTRLSVLK 612
                    K
Sbjct: 354 KLKEIQRYCK 363


>gi|146283021|ref|YP_001173174.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri A1501]
 gi|145571226|gb|ABP80332.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri A1501]
          Length = 455

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/364 (20%), Positives = 138/364 (37%), Gaps = 43/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ------AV 325
            PT  Q +AI   L+    +      +    GSGKT   ++ M   +    Q      A+
Sbjct: 34  EPTPVQVAAIPPALEGRDLR------VTAQTGSGKTAAFVLPMLNRLIGDAQPRVDVRAL 87

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + +++++Q T I   +ITG      +   L ++      ++IGT   
Sbjct: 88  ILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV----PDVLIGTPGR 143

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTAT---PIP 432
             + +    LIL  V        D     G  + ++    +       LL +AT      
Sbjct: 144 LIEHLNAGSLILKDVEILVIDEADRMLDMGFAEDMQRLVGECQKRQQTLLFSATSGGAGL 203

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R +V   L D    ++       +  +  II  + +            + K  +W+    
Sbjct: 204 REMVAKVLRDPLHLQLNRVSELNESTRQQIITADDVA----------HKEKLVHWLLANE 253

Query: 493 EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +K   F +   + + L+ H  +S   + ++HG     +++  ++  K G  K+L+AT 
Sbjct: 254 SYQKAVIFTNTRAQADRLYGHLVASDIKVFVLHGEKDQKERKLAIERLKQGGVKVLVATD 313

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+    ++I  +    G   +H++ GR GR       I L          +   
Sbjct: 314 VAARGLDIEGMDLVINFDMPRSGDEYVHRI-GRTGRAGAEGLAISLICHNDWNLMSSIER 372

Query: 610 VLKN 613
            LK 
Sbjct: 373 YLKQ 376


>gi|91782534|ref|YP_557740.1| putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
           LB400]
 gi|91686488|gb|ABE29688.1| Putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
           LB400]
          Length = 491

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 129/363 (35%), Gaps = 42/363 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  QE AI  +L        M+   Q   G+GKT    + +   +              
Sbjct: 34  PTPIQEQAIPVVLAG----RDMMGAAQ--TGTGKTASFSLPIIQRLLPQASTSASPARHP 87

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q    ++ Y ++T +   ++ G +    + + L R       I+I 
Sbjct: 88  VRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRR----GVEILIA 143

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPI 431
           T     D +Q           L+L   D     G     +  L         LL +AT  
Sbjct: 144 TPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATFS 203

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  T L D    ++    +    ++ ++  +   D+    ++++   G K   + 
Sbjct: 204 GEIKKLAATYLRDPQTIEVARSNSTATNVRQIVYEVAEGDKTGAVVQLIRERGLKQVIVF 263

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +    R +   E        IHG  S  ++   +D+FK G  + L+AT 
Sbjct: 264 --------CNSKIGASRLSRSLERDGVIATAIHGDRSQNERMQALDAFKRGEIEALVATD 315

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +   +I  +        +H++ GR GR       + L  P   K       
Sbjct: 316 VAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIEK 374

Query: 610 VLK 612
           ++K
Sbjct: 375 LIK 377


>gi|113460849|ref|YP_718916.1| ATP-dependent RNA helicase [Haemophilus somnus 129PT]
 gi|112822892|gb|ABI24981.1| ATP-dependent RNA helicase CsdA [Haemophilus somnus 129PT]
          Length = 601

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 131/365 (35%), Gaps = 41/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q++ I  +L           +     GSGKT    + + A ++      Q ++MA
Sbjct: 28  TPSPIQQACIPHLLNGHDV------LGMAQTGSGKTAAFSLPLLAKIDTNEKYPQMLVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  +++ + +  + +  + G      R     R     A +++GT     
Sbjct: 82  PTRELAIQVADACEQFVKFSKGVRIVTLYGG----QRYDIQLRALKQGAQVVVGTPGRIL 137

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D I+   L        +L   DE  R G    ++                   +T + ++
Sbjct: 138 DHIRRGTLDLSNLQSIVLDEADEMLRMGFIDDVETVMAELPEQ---------HQTALFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKKES 498
                I +IT++         +        ++ +    V      +A     ++E+   +
Sbjct: 189 TMPAPIKRITKRFMHNPQEVKIQSTQRTAPDITQSCWYVRGFRKNEALLRFLEVEDFDAA 248

Query: 499 NFRSVVERFN----SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
              +  +        L E      A ++G M+   +E  +D  +NG+  +L+AT V   G
Sbjct: 249 IIFTRTKTATLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILVATDVAARG 308

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSV 610
           +DV   S+++  +      + +H++ GR GR       IL   P     L          
Sbjct: 309 LDVERISLVVNYDIPLDAESYVHRI-GRTGRAGRAGRAILFVEPKERRLLGNIERLMKKA 367

Query: 611 LKNTE 615
           ++  E
Sbjct: 368 IEEVE 372


>gi|325116173|emb|CBZ51727.1| putative ATP-dependent helicase, putaive [Neospora caninum
           Liverpool]
          Length = 395

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 136/370 (36%), Gaps = 37/370 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+ AI  I++          I+Q   G+GKT V  +     ++      QA+I++P
Sbjct: 45  PSAVQQRAIVPIMKGRDV------IVQSQSGTGKTCVFCLGCLQCIDPKVRDPQALILSP 98

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  +          + V    G        +ALE       HI+ GT       
Sbjct: 99  TRELAEQSQKVCLALGDYMSVQVHCCIGGKRVGDDIRALEA----GVHIVSGTPGRVFHM 154

Query: 390 IQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTS 439
           I            L+L   DE    G ++++    +    +  V+L++AT     L +T+
Sbjct: 155 IAQRHFSTRHIKLLVLDEADEMLNRGFKEQVYDIYRYLPPSTQVVLVSATLPHEVLEMTT 214

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEK 495
               D  ++  K      + IK   + + R     + L  +       +A   C      
Sbjct: 215 KFMDDPFRVLVKRDELTLEGIKQFFVAVEREQWKFDTLTDLYDTLTITQAVIFCNT---- 270

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++ VE      +    +++ +HG M   +++ +M  F+ G  ++LIAT V   G+
Sbjct: 271 -----KAKVEWLAQKMKEANFTVSRMHGDMPQQERDEIMRQFRGGQSRVLIATDVWGRGL 325

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S++I  +  +     +H++ GR GR       I        +             
Sbjct: 326 DVQQVSLVINYDLPNSRELYIHRI-GRSGRFGRKGVAINFVKNDDIRILRDIEQYYATQI 384

Query: 616 DGFLIAEEDL 625
           D   +   DL
Sbjct: 385 DEMPMNVADL 394


>gi|254519975|ref|ZP_05132031.1| ATP-dependent RNA helicase DeaD [Clostridium sp. 7_2_43FAA]
 gi|226913724|gb|EEH98925.1| ATP-dependent RNA helicase DeaD [Clostridium sp. 7_2_43FAA]
          Length = 481

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/342 (22%), Positives = 136/342 (39%), Gaps = 21/342 (6%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           L+N+ F  P++ Q+  I  IL      ++   +++   GSGKT    I +   V   E  
Sbjct: 19  LKNLGFEKPSEVQQEVIPYIL------DKKDLVVKSQTGSGKTASFGIPLCELVNVEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q  E I    +  ++    I G  P   + + L++    + HI+ G
Sbjct: 73  VKALILVPTRELAIQVKEDISNIGRLKKVRCAAIFGKQPFNEQIRELKQ----RVHIVCG 128

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D I+   L +  +D        + L +        VL         T + ++  
Sbjct: 129 TPGRVIDHIERGNLDINDIDFVIIDEADKMLNMGFIDQITDVLD-KLPQSKNTALFSATI 187

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---- 497
             +I  +         +  +   +   D++ E+   V  E K  Y +        E    
Sbjct: 188 PKEIEGLYSNYMNNPTVLNIRSKVFNRDKISEKYFNVDREEKFKYLLKSLYAFTDESAII 247

Query: 498 -SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V   +SL +    S+  +HG M   D+ + M++FKN   K+L+AT V   GI 
Sbjct: 248 FCNTKDSVRNLSSLLKKEKISVKELHGDMDQKDRLATMENFKNKEFKVLVATDVAARGIH 307

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +   + +          + +H++ GR GRG++    I L   
Sbjct: 308 INHITNVFNYEVPIEKESYVHRI-GRSGRGDKKGLAISLVSK 348


>gi|119504065|ref|ZP_01626146.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460068|gb|EAW41162.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2080]
          Length = 437

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 128/359 (35%), Gaps = 36/359 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  +L+          +     G+GKT    + +   +  G        +A
Sbjct: 23  TPSPIQAQAIPAVLEGRDV------MAAAQTGTGKTAGFTLPLLHGLSKGQPAKANQVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +  Y +   +   ++ G +    +   L +       I+I T  
Sbjct: 77  LVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRLRK----GVDILIATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++ + KL ++I+DE  R      +            +M A P  R  ++ S
Sbjct: 133 RLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDI-------RRIMKALPNKRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +  +   K     P++  + P N     + +    + + +K + +   I +     
Sbjct: 186 ATFSEDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPVDKNQKRHLLVELINQHNWEQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     +      A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFSRTKRGANRLAEFLDKKGIQAAAIHGNKSQGARTRALSEFKSGKLRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           G+D+     ++  +        +H++ GR GR       I L     ++       +++
Sbjct: 306 GLDIEQLPQVVNLDLPEVAQDYVHRI-GRTGRAGATGQAISLVSADEAQLLQDIERLIQ 363


>gi|74625309|sp|Q9P6U9|DED1_NEUCR RecName: Full=ATP-dependent RNA helicase ded-1
 gi|7635831|emb|CAB88635.1| probable ATP-dependent RNA helicase DED1 [Neurospora crassa]
          Length = 688

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/374 (17%), Positives = 131/374 (35%), Gaps = 45/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA--------------AAV 318
           PT  Q+ +I  +   M  ++ M        GSGKT   L  +               AA 
Sbjct: 217 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQSFHTGPSPIPASAAG 270

Query: 319 EAGGQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
             G Q      A+I+AP   L  Q Y+  +K+   + +   ++ G      + + +ER  
Sbjct: 271 AYGRQRKAYPTALILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIER-- 328

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMT 427
                +++ T     D I+  ++ L  +     DE  R          Q         M 
Sbjct: 329 --GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEP--QIRRIVEGEDMP 384

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                +TL+ ++    DI  +  +   +  I   +  +    E I +    + +  K   
Sbjct: 385 KVNDRQTLMFSATFPRDIQILA-RDFLKDYIFLSVGRVGSTSENITQKVEYVEDIDKRSV 443

Query: 488 ICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +   +              + + +  +    +       IHG  +  ++E  ++ F+NG 
Sbjct: 444 LLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGR 503

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           C +L+AT V   G+D+ + + +I  +        +H++ GR GR          ++    
Sbjct: 504 CPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGIATAFFNRGNR 562

Query: 602 KNSYTRLSVLKNTE 615
                 L +LK   
Sbjct: 563 GVVRELLELLKEAN 576


>gi|261333672|emb|CBH16667.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 616

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 133/369 (36%), Gaps = 37/369 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------------ 319
            PT  Q   I   L      N    +     GSGKT   LI     +             
Sbjct: 137 KPTPVQSLGIPTAL------NHRDLMACAQTGSGKTASYLIPAINEILLNISNRPPYSPG 190

Query: 320 --AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
             +  QA+I+AP   L+ Q Y   +K+T +T +   ++ G     H+   L R       
Sbjct: 191 SHSSPQALILAPTRELSLQIYGEARKFTYHTPVRCVVVYGGADPRHQVHELSRGCK---- 246

Query: 378 IIIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           +++ T     D      +++ ++  +I+DE  R          +         M      
Sbjct: 247 LLVATPGRLMDMFSRGYVRFSEIRFLILDEADRMLDMGFEPQIRMIVQGPDSDMPRAGQR 306

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++   ++I ++  +    +     +  +    E I +    + +  K   +   +
Sbjct: 307 QTLLYSATFPVEIQRLA-REFMCRHSFLQVGRVGSTTENITQDVRWIEDPDKRQALLTLL 365

Query: 493 EEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            E +          +   +       +   +   IHG     ++E  +  FK+G C++L+
Sbjct: 366 RENEGKLVLVFVEKKRDADYLERFLRNSELACVSIHGDRVQREREEALRLFKSGACQVLV 425

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ +  ++I  +        +H++ GR GR  ++   I  ++         
Sbjct: 426 ATDVASRGLDIPNVGVVIQYDMPSNIDDYVHRI-GRTGRAGKVGVAISFFNEKNRNIVDD 484

Query: 607 RLSVLKNTE 615
            + +L  T 
Sbjct: 485 LIPLLNETN 493


>gi|242009038|ref|XP_002425300.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212509065|gb|EEB12562.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 1014

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 141/372 (37%), Gaps = 42/372 (11%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           IL+   F  PT  Q  AI  I+           I     GSGKTL  L+ M   +     
Sbjct: 362 ILKKNGFEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTLAFLLPMFRHILDQPP 415

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  A+IM P   L  Q  +  KK++++  + V  + G    + +   L+R     
Sbjct: 416 LEETDGPIAIIMTPTRELCMQIGKDCKKFSKSVSLKVVCVYGGTGISEQIAELKR----G 471

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQ----QRLKLTQKATAPHV 423
           A I++ T     D +           ++  +++DE  R        Q +++         
Sbjct: 472 ADIVVCTPGRMIDMLAANSGRVTNLLRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQ 531

Query: 424 LLMTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            +M +   PR    L    L      ++  +    K ++  ++ ++   + ++ L+++  
Sbjct: 532 TVMFSATFPRQMEALARRILTKPIEVQVGGRSVVCKDVEQHVVVLDEDKKFLKLLELLGI 591

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
              +   I             S  +    L +    S+++ HG +   D++S +  FK+G
Sbjct: 592 YQNQGSVIV------FVDKQESADDLLKELMKASYPSMSL-HGGIDQFDRDSTIIDFKSG 644

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             KLLIAT+V   G+DV    +++  +  +     +H+  GR GR            P  
Sbjct: 645 KVKLLIATSVAARGLDVKQLILVVNYDCPNHYEDYVHR-CGRTGRAGNKGVAYTFITPEQ 703

Query: 601 SKNSYTRLSVLK 612
            + +   +  L+
Sbjct: 704 ERYAGEIIRALE 715


>gi|255955551|ref|XP_002568528.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590239|emb|CAP96415.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 416

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 127/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I+    ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFAISTLQIIDTVVRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+       H++ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 157 MIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E I++  + +  E  K   +C   +      
Sbjct: 208 LPYDVLDMTTKFMT-DPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQ 266

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 267 AVIFCNTRRKVDWLADKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 326

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 327 GIDVQQVSLVINYDLPTNRENYIHRI-GRSGRFGRKGVAINFVTSD 371


>gi|134057099|emb|CAK44387.1| unnamed protein product [Aspergillus niger]
          Length = 491

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVVRESQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + L+       H++ GT     D
Sbjct: 101 PTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQ----HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 157 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E I++  + +  E  K   +C   +      
Sbjct: 208 LPYDVLDMTTKFMT-DPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQ 266

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 267 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 326

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 327 GIDVQQVSLVINYDLPTNRENYIHRI-GRSGRFGRKGVAINFVTSD 371


>gi|121719103|ref|XP_001276289.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus clavatus NRRL 1]
 gi|142985525|sp|A1C595|FAL1_ASPCL RecName: Full=ATP-dependent RNA helicase fal1
 gi|119404487|gb|EAW14863.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus clavatus NRRL 1]
          Length = 399

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTAVRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + L+       H++ GT     D
Sbjct: 101 PTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQ----HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 157 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E I++  + +  E  K   +C   +      
Sbjct: 208 LPYDVLDMTTKFMT-DPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQ 266

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 267 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 326

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 327 GIDVQQVSLVINYDLPTNRENYIHRI-GRSGRFGRKGVAINFVTSD 371


>gi|116253340|ref|YP_769178.1| DEAD box ATP-dependent RNA helicase protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257988|emb|CAK09086.1| putative DEAD box ATP-dependent RNA helicase protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 576

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 135/355 (38%), Gaps = 28/355 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--------GQ 323
           +PT  QE +I  +L+          I     G+GKT    + +   + A          +
Sbjct: 39  TPTPIQEHSIPLLLEGRD------LIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTTR 92

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   L  Q  E +KK+ + + + + ++ G +    ++  LE+       I++ T 
Sbjct: 93  TLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQLEK----GTDILVATP 148

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D I    + L  V         Q L L        +  M      +T++ ++    
Sbjct: 149 GRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKM-VPKKRQTMLFSATMPK 207

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKESN--- 499
            I+ +  +     P+K  + P  +  + +E+    +  +  K   +   + E  +     
Sbjct: 208 AIADLAGEYL-VDPVKVEVTPPGKAADKVEQYVHFVGGKNDKTELLRKSLTENPDGRAMV 266

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   E+     E+   S+A IHG  S   +E  + +F++G+ K LIAT V   GID
Sbjct: 267 FLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTLIATDVAARGID 326

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           +   S +   +      A +H++ GR  R       I    P  +K       ++
Sbjct: 327 IPAVSHVYNYDLPEVPDAYVHRI-GRTARAGRDGIAIAFCAPDEAKLLRDIERLM 380


>gi|254249351|ref|ZP_04942671.1| Superfamily II DNA and RNA helicase [Burkholderia cenocepacia
           PC184]
 gi|124875852|gb|EAY65842.1| Superfamily II DNA and RNA helicase [Burkholderia cenocepacia
           PC184]
          Length = 436

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 164/450 (36%), Gaps = 49/450 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  Q +++   L           I Q   GSGKT    +A+ A ++A     QA+I+ P 
Sbjct: 2   TPIQAASLPVALAGQD------LIAQAKTGSGKTAAFSLALLARLDARSFDVQAMILCPT 55

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + +++  +    + V  + G  P   + ++LE      AHI++GT     D 
Sbjct: 56  RELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH----GAHIVVGTPGRIMDH 111

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +    L L  ++        + L +        V  M  T   +TL+ ++     I+K++
Sbjct: 112 LDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTT-RQTLLFSATYPDGIAKLS 170

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSV 503
           ++           +     D  I +    ++E ++ + +   +   +        N +  
Sbjct: 171 QQFLRNPKEIK--LAERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFCNTKQQ 228

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
                 +          +HG +   +++ V+  F N +C +L+AT V   G+D+     +
Sbjct: 229 CRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAV 288

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA-- 621
           I  +        +H++ GR GR ++    + L                K   +   +A  
Sbjct: 289 INVDVTPDPEVHVHRI-GRTGRADQDGWALSLVSMDEMGRVGAIEQAQKREVEWHPLAEL 347

Query: 622 -----------EEDLKQRK-------EGEILG--IKQSGMPKFLIAQP--ELHDSLLEIA 659
                       E L+           G++LG     +G     I +       + + I 
Sbjct: 348 KPADDSVLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVTEFSTYVAIE 407

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
           R  A+  L +  +   ++G+ +++ L   +
Sbjct: 408 RGVARDALRKL-NAGKIKGKRVKVRLMDEE 436


>gi|329954895|ref|ZP_08295912.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
 gi|328526999|gb|EGF54010.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
          Length = 499

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 125/357 (35%), Gaps = 33/357 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE +I  IL+          I     G+GKT   L+ +   +  GG        ++M
Sbjct: 89  TPIQEKSIPVILEGRD------LIAVAQTGTGKTAAYLLPILNKLSEGGHPEDSINCIVM 142

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LAQQ  + ++ ++    +    + G        +    +  G A ++I T     
Sbjct: 143 APTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKRGLTLG-ADVVIATPGRLI 201

Query: 388 DS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                  +   ++   I+DE  R           +               +T++ ++   
Sbjct: 202 AHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKY------LPKERQTIMFSATMP 255

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
             I ++ +          V + +++  E I +   V  E +K   I     E+       
Sbjct: 256 AKIQQLAQSILNDPAE--VKLAVSKPAEKIVQAAYVCYENQKLGIIRSLFAEQTPERVII 313

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +    ++  +H  +    +E VM  FK G   +L+AT ++  GID
Sbjct: 314 FASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRVNILVATDIVARGID 373

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + D  ++I  +  H     +H++ GR  R       +   +     N     + L+ 
Sbjct: 374 IDDIRLVINYDVPHDSEDYVHRI-GRTARANNDGVALTFVNEKEQTNFKGIENFLEK 429


>gi|78063799|ref|YP_373707.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. 383]
 gi|77971684|gb|ABB13063.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. 383]
          Length = 465

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 168/459 (36%), Gaps = 50/459 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +++   L           I Q   GSGKT    +A+ A ++A    
Sbjct: 22  LAQLGYVDMTPIQAASLPIALAGQD------LIAQAKTGSGKTAAFSLALLARLDARRFD 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+ P   LA Q  + +++  +    + V  + G  P   + ++LE      AHI++
Sbjct: 76  VQAMILCPTRELADQVTQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH----GAHIVV 131

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT     D +    L L  ++        + L +        V  M  T   +TL+ ++ 
Sbjct: 132 GTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTT-RQTLLFSAT 190

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+K++++       K V +     D  I +    ++E ++ + +   +   +    
Sbjct: 191 YPDGIAKLSQQFLRNP--KEVKLAERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRPVST 248

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +        +          +HG +   +++ V+  F N +C +L+AT V   G
Sbjct: 249 IAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARG 308

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+     +I  +        +H++ GR GR ++    + L                K  
Sbjct: 309 LDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQDGWALSLASMDEMGRVGGIEQAQKRE 367

Query: 615 EDGFLIA-------------EEDLKQRK-------EGEILG--IKQSGMPKFLIAQP--E 650
            +   +A              E L+           G++LG     +G     I +    
Sbjct: 368 VEWHPLAELTPTGTDTLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVT 427

Query: 651 LHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
              + + + R  A   L +  +   ++G+ +++ L   +
Sbjct: 428 EFSTYVALERGVAHDALRKL-NAGKIKGKRVKVRLMDEE 465


>gi|312067818|ref|XP_003136922.1| Ddx49-A-prov protein [Loa loa]
 gi|307767911|gb|EFO27145.1| Ddx49-A-prov protein [Loa loa]
          Length = 478

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 133/366 (36%), Gaps = 38/366 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--AVEA-GGQAVIMA 328
           +PT  Q + I  IL           +     G+GKTL   + +    A++  G  A+++ 
Sbjct: 65  TPTPVQVNCIPHILAG------SDVLGCAKTGTGKTLAFGLPILHELAIDPYGICALVLT 118

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  +          + + I+ G   +  +   L R    + HI++ T     D
Sbjct: 119 PTRELAIQIGDQFAALGTPIGLKIGIVVGGKDRVAQGNDLAR----RPHIVVATPGRLAD 174

Query: 389 SIQ---------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
            ++         + KL  +++DE  R    Q       +     +L       +TL+ ++
Sbjct: 175 HLESDSENTGKLFKKLRFLVLDEADRLLDGQ------YSIELKTILNFLPKQRQTLLFSA 228

Query: 440 LGDIDISKITE---KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                +S++ +   K       K+ I  ++++++        + +    Y +    E+  
Sbjct: 229 TITSALSQLHQVSVKKPYFFEDKSEIATVDKLEQKYVLCPCAVKDAYLVYVVKNFHEKHP 288

Query: 497 ES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +S      +     +    +       +  +H ++S  ++ S +  F++G  K+LI T V
Sbjct: 289 DSLILIFSHTCRECQALAIMFHGLGFQVGSLHSQISQQERTSSLTKFRSGRIKILICTDV 348

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+    ++I  N        +H++ GR  R       +L               V
Sbjct: 349 ASRGLDIPHVDLVINHNVPQNPKTYIHRV-GRSARAGRFGCALLFVTQYDIFLVQEIEKV 407

Query: 611 LKNTED 616
           +    D
Sbjct: 408 IGKKLD 413


>gi|220678758|emb|CAX13889.1| novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 43 (DDX43) [Danio rerio]
 gi|220678952|emb|CAX13571.1| novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 43 (DDX43) [Danio rerio]
          Length = 719

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/392 (18%), Positives = 142/392 (36%), Gaps = 44/392 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---------AGG 322
            PT  Q  A   +L  +        I     G+GKTL  L+     ++          G 
Sbjct: 300 KPTPIQSQAWPVVLNGID------LIGIAQTGTGKTLAYLLPGFIHMDGQPMPRDKRNGP 353

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++ P   LA Q      KY+      + I  G      R   ++ +  G   I+I T
Sbjct: 354 GMLVLTPTRELALQIEAECNKYSYKGFKSICIYGGG----DRNAQIKVVTSG-VDIVIAT 408

Query: 383 HALFQDS-----IQYYK---LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP 432
                D      I       L+L   D     G + ++   +         ++ +AT  P
Sbjct: 409 PGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDIRPDRQTVMTSATWPP 468

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             R L  + L D  +  +              +   + DE  + +   +   +    +  
Sbjct: 469 GVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDFIHRMEPLDKVLI 528

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            + +K +++  S       +      ++  +HG     D+E  +  FK+G  ++L+AT +
Sbjct: 529 FVGKKLKADDLSSDLCLQGI------AVQSLHGDREQCDREEALQDFKDGRVRILVATDL 582

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D + +   +        +H++ GR GR       + L      + +   +++
Sbjct: 583 ASRGLDVHDITHVFNYDFPRNVEEYVHRV-GRTGRAGRSGESVTLVTREDWRVAAELITI 641

Query: 611 LKNT-----EDGFLIAEEDLKQRKEGEILGIK 637
           L+ +     E+  L+AE   K R+E E+ G +
Sbjct: 642 LERSGQDVPEELVLMAERYEKHRREKEMFGPR 673


>gi|157127270|ref|XP_001654897.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|157127276|ref|XP_001654900.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108872965|gb|EAT37190.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108872968|gb|EAT37193.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 594

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/364 (16%), Positives = 125/364 (34%), Gaps = 40/364 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQA 324
           PT  Q       L  +        +     GSGKTL  ++     +          G   
Sbjct: 141 PTPIQAQGWPIALSGL------NMVGVAKTGSGKTLGYMLPAIVHINHQKPDPSVRGPLV 194

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LAQQ  +    +  ++ I    + G   +  +   L R       I+I T  
Sbjct: 195 LVLAPTRELAQQIQQVATDFGSSSYIRNTCLFGGSSKGPQASDLRR----GVEIVIATPG 250

Query: 385 LFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D ++       ++  +++DE  R          +K      +L    P  + L+ ++
Sbjct: 251 RLIDFLETGTTTLQRVTYLVLDEADRMLDMGFEPQIRK------ILEQVRPDRQILMWSA 304

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
               ++ ++     G      V       +  I +   V+ E +K   +   ++      
Sbjct: 305 TWPKEVQRLARDFLGDYVQINVGSLELSANHNITQYVKVIEEHEKNEQLGKLLDNLSARG 364

Query: 499 ---------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +   ++  S    +      +HG  S  ++E  ++ F+N    +L+AT 
Sbjct: 365 PAGKILIFSTTKRKCDQITSYLRRYGQDAVGMHGDKSQQERERALNRFRNSNSCILVATD 424

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV    ++I  +        +H++ GR GR          +     K +   ++
Sbjct: 425 VAARGLDVDGIKVVINYDYPQQTEDYVHRI-GRTGRSNATGEAYTFFTSNERKMAKELVA 483

Query: 610 VLKN 613
           +L+ 
Sbjct: 484 ILEE 487


>gi|94498979|ref|ZP_01305517.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
 gi|94428611|gb|EAT13583.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
          Length = 457

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 124/345 (35%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           SPT  Q   I  +L           +     G+GKT    + +   +            +
Sbjct: 23  SPTPIQAQGIPAVLSGRD------LLAAAQTGTGKTAGFTLPILQKLLDAPKGVKPNQAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA Q  + +  Y++ T+I  E++ G +    + + L R       I++ T 
Sbjct: 77  VLVLTPTRELAAQVQDNVATYSKYTKIRSEVVFGGVKINPQMQRLRR----GVDILVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     +I + +L  +I+DE  R      +   +K       +M   P  R  ++ 
Sbjct: 133 GRLLDLHNQNAIHFDQLDTLILDEADRMLDMGFINDIRK-------IMRLLPKKRQNLMF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +   K     P++  + P N   + + +  + + + +K   +   + ++K  
Sbjct: 186 SATFSDKIRALAKTIVENPVEVSVTPKNTTAKKVRQSIIAVDKKQKINLLIDLLAKEKWH 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +    +            A IHG  S   +   +  FK+   ++L+AT +  
Sbjct: 246 QVLVFSRTKHGANKIAKQLSDADIPAAAIHGNKSQGARTRALADFKSNDIQVLVATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            GID+     +I  +  +     +H++ GR  R       +    
Sbjct: 306 RGIDIDQLPHVINFDLPNVAENYVHRI-GRTARAGSDGDALSFVS 349


>gi|330818246|ref|YP_004361951.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           gladioli BSR3]
 gi|327370639|gb|AEA61995.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           gladioli BSR3]
          Length = 505

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/362 (19%), Positives = 126/362 (34%), Gaps = 39/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA------AVEAGG--- 322
            PT  Q  AI  +L           +     G+GKT    + +        A +AGG   
Sbjct: 23  EPTPIQTQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLNASTAAQAGGKRA 76

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q  E ++ Y +  ++   ++ G +    +  AL+R       I++ 
Sbjct: 77  VRALILTPTRELAAQVEESVRAYGKYLKLRSTVMFGGVSINPQIDALKR----GVDIVVA 132

Query: 382 THALFQDSIQYY-----KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D +Q       +L ++++DE  R      +   ++       ++   P  R  +
Sbjct: 133 TPGRLLDHMQQKTIDVSQLDILVLDEADRMLDMGFIHDIKR-------VLARLPAKRQNL 185

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           L S    D  K         P    +   N   E I +    +   +K   +   I E  
Sbjct: 186 LFSATFSDEIKALADSLLDSPALIEVARRNTTAETIAQKIYPVDRDRKRELLTHLIREHN 245

Query: 497 ESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +    R          S   IHG  S   +   +  FK GT ++L+AT +
Sbjct: 246 WFQVLVFTRTKHGANRLAEQLGKDGISALAIHGNKSQSARTRALTEFKAGTLQVLVATDI 305

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GID+     ++     +     +H++ GR GR       + L      +       +
Sbjct: 306 AARGIDIDQLPHVVNYELPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKQLLRDIEKL 364

Query: 611 LK 612
           +K
Sbjct: 365 IK 366


>gi|306827075|ref|ZP_07460372.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
 gi|304430709|gb|EFM33721.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
          Length = 539

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 125/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +       QA+++AP 
Sbjct: 25  SPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ +   + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   LIL  V        DE    G        +++       LL +AT P P + + + 
Sbjct: 135 KRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  +I  K      +    + +   ++     +++     +   +  +       
Sbjct: 195 FMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D+ 
Sbjct: 249 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR  +    I    P 
Sbjct: 307 GVTHVYNYDITQDPESYVHRI-GRTGRAGKSGESITFVSPN 346


>gi|72161844|ref|YP_289501.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
 gi|71915576|gb|AAZ55478.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
          Length = 562

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 140/383 (36%), Gaps = 48/383 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-----GQAVI 326
            PT  Q  AI  +L+          + Q   G+GKT    + +   +          A+I
Sbjct: 32  EPTAIQREAIPSLLEGRD------LLGQAATGTGKTAAFSLPILHRLPDSDRGDTPSALI 85

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E + +Y ++ +  +  I G  P   + +ALER       +++ T    
Sbjct: 86  LVPTRELALQVSEALHRYGRHLKARILPIYGGQPIGRQLRALER----GVDVVVATPGRA 141

Query: 387 QDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRT-- 434
            D I    L+L  V        DE    G  + ++    +       +L +AT   R   
Sbjct: 142 LDHIGRGTLVLDTVRTVVLDEADEMLDMGFAEDIEAIIEEVPENRQTVLFSATMPDRIEG 201

Query: 435 LVLTSLGDIDISKITEK---PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           +    L D    +I      P     ++     + R  +     +V+  E   A  +  +
Sbjct: 202 IARRHLTDPVRVRIARTSPAPGEEPKVRQNAYIVARPYKPAALGRVLDMESPTAALVFCR 261

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    R  V++              +HG MS   ++ VM   + GT  LLIAT V 
Sbjct: 262 T--------REEVDQLTETLNARGYRAEALHGGMSQEQRDRVMARLRGGTADLLIATDVA 313

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+   + ++  N        +H++ GRVGR       I L  P      +  L  +
Sbjct: 314 ARGLDIEHLTHVVNYNVPSATETYVHRI-GRVGRAGREGVAITLVEPRE----HRMLKTI 368

Query: 612 KNTEDGFLIAEE-----DLKQRK 629
           + +  G +  E+     DL+ R+
Sbjct: 369 QRSTSGPISVEKLPTVADLRARR 391


>gi|24379088|ref|NP_721043.1| ATP-dependent RNA helicase [Streptococcus mutans UA159]
 gi|24376988|gb|AAN58349.1|AE014905_2 putative ATP-dependent RNA helicase, DEAD-box family [Streptococcus
           mutans UA159]
          Length = 517

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/365 (19%), Positives = 130/365 (35%), Gaps = 34/365 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  QE  I   L+          I Q   G+GKT    +     ++      QA+++A
Sbjct: 23  EPSPIQELTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIDVTNNVVQALVIA 76

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + ++ +  ++ V  + G      + KAL+      AHI++GT     D
Sbjct: 77  PTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLD 132

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLV 436
            I+   L L  V        DE    G        +++       LL +AT     + + 
Sbjct: 133 LIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIG 192

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +  + + +  KI  K      +    I +   ++     +++  E  +   +  +     
Sbjct: 193 VKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D
Sbjct: 249 ----KRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLD 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   + +   +      + +H++ GR GR  +    I    P           + K    
Sbjct: 305 ISGVTHVYNYDIPQDPESYVHRI-GRTGRAGKHGQSITFVAPNEMGYLQIIEKLTKKRMK 363

Query: 617 GFLIA 621
           G   A
Sbjct: 364 GMKPA 368


>gi|68473005|ref|XP_719308.1| hypothetical protein CaO19.7546 [Candida albicans SC5314]
 gi|46441121|gb|EAL00420.1| hypothetical protein CaO19.7546 [Candida albicans SC5314]
 gi|238880344|gb|EEQ43982.1| ATP-dependent rRNA helicase RRP3 [Candida albicans WO-1]
          Length = 399

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/341 (19%), Positives = 128/341 (37%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMA 328
            PT  Q  AI   L+          I     GSGKT    I +  ++    Q   A+++A
Sbjct: 5   KPTPIQSEAIPHALEGKD------IIGLAQTGSGKTAAFAIPILQSLWHAQQPYFALVLA 58

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  +       +  +    I G M    + + L R    + H+I+ T     D
Sbjct: 59  PTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMR----KPHVIVATPGRIMD 114

Query: 389 SIQY------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            +++        L  +++DE  R           K       ++   PI RT  L S   
Sbjct: 115 HLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDK-------ILKVIPIKRTTYLFSATM 167

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------ 496
            +  +  ++ +   P++  +    +  + + +  +++++G K   +   + E        
Sbjct: 168 TNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSIIV 227

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +   +  +R   L      +   +HG++S   +   ++ FK+    +L+AT V   G+D
Sbjct: 228 FTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLD 287

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +    ++I  +      A +H++ GR  R       I L  
Sbjct: 288 IPSVDVVINYDIPTDSKAYIHRV-GRTARAGRSGKSISLIT 327


>gi|302307229|ref|NP_983823.2| ADL273Cp [Ashbya gossypii ATCC 10895]
 gi|299788899|gb|AAS51647.2| ADL273Cp [Ashbya gossypii ATCC 10895]
          Length = 623

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/372 (16%), Positives = 126/372 (33%), Gaps = 42/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-------------- 317
            PT  Q+ ++  + +          +     GSGKT   L  + +               
Sbjct: 168 KPTPVQKYSVPIVAKGRD------LMACAQTGSGKTGGFLFPVLSQSFSNGPASTPDESG 221

Query: 318 ---VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
               +A   AV++AP   LA Q ++  KK+T  + +   ++ G      + + LER    
Sbjct: 222 YYMRKAYPTAVVLAPTRELATQIFDEAKKFTYRSWVKPCVVYGGADIRQQIRELER---- 277

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
              +I+ T     D ++  K+ L  V     DE  R          Q         M   
Sbjct: 278 GCDLIVATPGRLNDLLERGKISLCSVKYLVLDEADRMLDMGFEP--QIRHIVEGCDMPTV 335

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              +TL+ ++    DI  +      +  I   +  +    E I +  + + +  K   + 
Sbjct: 336 ENRQTLMFSATFPTDIQHLAADFL-KDYIFLSVGRVGSTSENITQKVLHVEDIDKRSVLL 394

Query: 490 PQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
             +              + + +           S   IHG  +  ++E  +  F+ G   
Sbjct: 395 DLLAASDGGLTLVFVETKRMADALTDFLIMQNLSATAIHGDRTQAERERALAFFRTGRAN 454

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+D+ + + +I  +        +H++ GR GR          ++      
Sbjct: 455 VLVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRI-GRTGRAGNTGLATAFFNRGNKNV 513

Query: 604 SYTRLSVLKNTE 615
               + +L+   
Sbjct: 514 VKELVDILEEAN 525


>gi|213161435|ref|ZP_03347145.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 154

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/156 (46%), Positives = 102/156 (65%), Gaps = 2/156 (1%)

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   LL+ATTVIEVG+DV +AS++IIEN E  GLAQLHQLRGRVGRG   S C+LLY 
Sbjct: 1   KQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK 60

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
            PLSK +  RL VL+++ DGF+IA++DL+ R  GE+LG +Q+G  +F +A      +++ 
Sbjct: 61  SPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIP 120

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEA 693
             ++ A+HI  + P     +    R +    +Y+ A
Sbjct: 121 EVQRIARHIHERYP--QQAQALIERWMPETERYSNA 154


>gi|74694613|sp|Q75B50|DED1_ASHGO RecName: Full=ATP-dependent RNA helicase DED1
          Length = 623

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/372 (16%), Positives = 126/372 (33%), Gaps = 42/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-------------- 317
            PT  Q+ ++  + +          +     GSGKT   L  + +               
Sbjct: 168 KPTPVQKYSVPIVAKGRD------LMACAQTGSGKTGGFLFPVLSQSFSNGPASTPDESG 221

Query: 318 ---VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
               +A   AV++AP   LA Q ++  KK+T  + +   ++ G      + + LER    
Sbjct: 222 YYMRKAYPTAVVLAPTRELATQIFDEAKKFTYRSWVKPCVVYGGADIRQQIRELER---- 277

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
              +I+ T     D ++  K+ L  V     DE  R          Q         M   
Sbjct: 278 GCDLIVATPGRLNDLLERGKISLCSVKYLVLDEADRMLDMGFEP--QIRHIVEGCDMPTV 335

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              +TL+ ++    DI  +      +  I   +  +    E I +  + + +  K   + 
Sbjct: 336 ENRQTLMFSATFPTDIQHLAADFL-KDYIFLSVGRVGSTSENITQKVLHVEDIDKRSVLL 394

Query: 490 PQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
             +              + + +           S   IHG  +  ++E  +  F+ G   
Sbjct: 395 DLLAASDGGLTLVFVETKRMADALTDFLIMQNLSATAIHGDRTQAERERALAFFRTGRAN 454

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+D+ + + +I  +        +H++ GR GR          ++      
Sbjct: 455 VLVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRI-GRTGRAGNTGLATAFFNRGNKNV 513

Query: 604 SYTRLSVLKNTE 615
               + +L+   
Sbjct: 514 VKELVDILEEAN 525


>gi|86145730|ref|ZP_01064059.1| ATP-dependent RNA helicase DbpA [Vibrio sp. MED222]
 gi|85836429|gb|EAQ54558.1| ATP-dependent RNA helicase DbpA [Vibrio sp. MED222]
          Length = 459

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 157/445 (35%), Gaps = 62/445 (13%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ ++  T  Q  ++  IL           I QG  GSGKT    + +   +      
Sbjct: 19  LDSLGYTEMTPIQALSLPTILDGKDV------IGQGKTGSGKTAAFGLGVLQNLRVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 73  VQSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 128

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATP 430
           GT     D ++  +        L+L   D     G Q      +         LL +AT 
Sbjct: 129 GTPGRILDHLERDRIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQTLLFSATF 188

Query: 431 IPRT--LVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
             +   +    + + ++ K+  T   +  +     +      D+ +E + ++  + + A 
Sbjct: 189 PKQIKSVADRIMNNPEMVKVESTHDHSSIQQHFYKVEGTEARDDALELM-LLHHQPESAV 247

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C   +E +  N       F         S+  +HG M   +++  +  F N T  +L+
Sbjct: 248 VFCNTKKEVQNVNDELSHRGF---------SVIELHGDMEQRERDQALVQFSNKTISILV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV +   +            +H++ GR GR       I  +          
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRI-GRTGRAGSKGVAISFFSEKEMHRVAQ 357

Query: 607 RLSVL---------------KNTEDGFLIAEED---LKQRKEGEILG--IKQSGMPKFLI 646
               +               K      +  + D     + + G+ILG    Q G+    +
Sbjct: 358 IDEYMDMPIEPSQLPAKPIAKPYYSNMVTIQIDGGKKAKLRAGDILGALTGQGGIDGKSV 417

Query: 647 AQPELHD--SLLEIARKDAKHILTQ 669
            +  L    + + + R  AK  L +
Sbjct: 418 GKINLFAMRAYVAVERSMAKKALGK 442


>gi|327481375|gb|AEA84685.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri DSM 4166]
          Length = 443

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/364 (20%), Positives = 136/364 (37%), Gaps = 43/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ------AV 325
            PT  Q +AI   L+    +      +    GSGKT   ++ M   +    Q      A+
Sbjct: 22  EPTPVQVAAIPPALEGRDLR------VTAQTGSGKTAAFVLPMLNRLIGDAQPRVDVRAL 75

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + +++++Q T I   +ITG      +   L ++      ++IGT   
Sbjct: 76  ILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV----PDVLIGTPGR 131

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTAT---PIP 432
             + +    LIL  V        D     G  + ++    +       LL +AT      
Sbjct: 132 LIEHLNAGNLILKDVEVLVIDEADRMLDMGFAEDMQRLVGECEKRQQTLLFSATSGGAGL 191

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R +V   L D    ++       +  +  II  +              + K  +W+    
Sbjct: 192 REMVAKVLNDPLHLQLNRVSELNESTRQQIITADDPA----------HKEKLVHWLLANE 241

Query: 493 EEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +K   F +   + + L+ H  +    + ++HG     +++  ++  K G  K+L+AT 
Sbjct: 242 TYQKAVIFTNTRAQADRLYGHLVAGDIKVFVLHGEKDQKERKLAIERLKQGGVKVLVATD 301

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+    ++I  +    G   +H++ GR GR       I L          +   
Sbjct: 302 VAARGLDIEGMDLVINFDMPRSGDEYVHRI-GRTGRAGAEGLAISLICHNDWNLMSSIER 360

Query: 610 VLKN 613
            LK 
Sbjct: 361 YLKQ 364


>gi|260912300|ref|ZP_05918851.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633601|gb|EEX51740.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 447

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 128/362 (35%), Gaps = 42/362 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I  IL+          +     G+GKT   L+ + + ++ GG        +IM
Sbjct: 25  TPIQEHCIPQILEGKD------ILGVAQTGTGKTAAYLLPIMSMLDDGGFPHDAINCIIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ +      +  +        +R     +     A III T   F 
Sbjct: 79  SPTRELAQQIDQAMQGFGYYLDSVSSLAIYGGNDGNRYDQEIKSLRLGADIIIATPGRFI 138

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVL 437
             IQ   +        +L   D     G  + +     Q       ++ +AT  P+   L
Sbjct: 139 SHIQLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKQLPPTCQTIMFSATMPPKIEQL 198

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                 +  +I              + +++  E I +   +  E +K   +    +    
Sbjct: 199 AKTLLKNPVEIK-------------LAVSKPAEKIAQKAYLCYEPQKLKVLQDIFKAGSL 245

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +        +  V+  N        +   +H  +S  +++ VM  FK+G   +L+AT ++
Sbjct: 246 NRVIIFSGKKQKVKEINRALVRMKVNSDEMHSDLSQEERDRVMFKFKSGATDVLVATDIL 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ D +++I  +  H     +H++ GR  R E     I L               L
Sbjct: 306 SRGIDIDDITMVINYDVPHDVEDYVHRI-GRTARAERDGVAITLISDQDVYYFQQIERFL 364

Query: 612 KN 613
           + 
Sbjct: 365 EK 366


>gi|229526460|ref|ZP_04415864.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
 gi|229336618|gb|EEO01636.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
          Length = 437

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 128/337 (37%), Gaps = 30/337 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 44  EPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 97

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +        +    + G + +  ++ AL        +I++ T     D 
Sbjct: 98  TRELAMQVSEVLTHVGTPLGLNTLCLCGGVDKTEQQNALAE----NPNILVATTGRLLDL 153

Query: 390 IQ----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            Q      ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 154 TQSGLSLSRVTTLVLDEADRL-------LDMGFWPQVQALASQTAGVRQTVMCSATFSDD 206

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++         + 
Sbjct: 207 LKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQNPWPQVLVFIG 266

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S   +E+ +  FKNGT ++LIAT ++  GI +  
Sbjct: 267 AKENADSLTKKLNKAGVVATALHGDKSQAQREAALAEFKNGTTQVLIATDLLARGIHIEQ 326

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             ++I           +H++ GR  R  +      L 
Sbjct: 327 LPVVINFELPMHAETYVHRV-GRTARAGQQGIAFSLV 362


>gi|146329248|ref|YP_001209905.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
 gi|146232718|gb|ABQ13696.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
          Length = 442

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 125/339 (36%), Gaps = 28/339 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAV 325
            PT  Q  AI   LQ          +L    GSGKT   ++ +   + A        +A+
Sbjct: 25  KPTPIQARAIPLALQGRD------LLLSAQTGSGKTAAFVLPILQQLAAEPTKSKLPRAL 78

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           I+ P   LAQQ  + + +Y++  + +  I + G      + +AL++       I++ T  
Sbjct: 79  IVIPTRELAQQVQDSVFQYSREFKELYSITLVGGTAYQKQIRALKK----GVSIVVATPG 134

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D ++   L L  +          R+     +   H ++       +T++ ++  D +
Sbjct: 135 RLLDHVREGHLDLSQI-RYLVLDEADRMLDMGFSDDMHAIIKQCPQNRQTIMSSATWDGN 193

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---- 500
           + KI    AG       II       + E       +  K   +   + ++  +      
Sbjct: 194 VGKIA---AGFTHNAEKIIIAPETSHIEEISYFTDDQAHKNAVLDRLLADEAVTQCIVFT 250

Query: 501 --RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +S  E               +HG +    +  +++ F+NG   +L+AT +   GID+ 
Sbjct: 251 ATKSTTETVAHHLYENGFQAQFLHGDLQQQKRNRIIERFRNGQINVLVATDIAARGIDIP 310

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             S +I  +        +H++ GR GR       + L  
Sbjct: 311 AISHVINYDLPRQSEDYVHRI-GRSGRAGRSGVALNLVS 348


>gi|303237281|ref|ZP_07323851.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens
           FB035-09AN]
 gi|302482668|gb|EFL45693.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens
           FB035-09AN]
          Length = 565

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 136/359 (37%), Gaps = 36/359 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE+ I +IL+          +     G+GKT   L+ + + +  GG        +IM
Sbjct: 25  TPIQENCIPEILKGKDV------LGVAQTGTGKTAAYLLPVLSKLADGGYPEDAINCLIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + I+ ++     +  +        +R     +     A+++I T   F 
Sbjct: 79  SPTRELAQQIDQAIQGFSYYLNGVSCVAVYGGNDGNRYDQELKSLSLGANLVIATPGRFI 138

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRT--L 435
             +    +        IL   D     G  + +   QK        ++ +AT   +   L
Sbjct: 139 SHMSLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIQKNLPKTCQTIMFSATMPKKIEDL 198

Query: 436 VLTSLGDIDISKIT-EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
             T L +  + K+   KPA +      +    +   +I+ +        +   I    ++
Sbjct: 199 AQTLLTNPSVIKLAVSKPAEKIHQLAYVCHETQKMGIIKDIFKA--GNLQRVIIFSGSKQ 256

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
           K +    S+ ++          +   +H  ++  +++ +M  FK+G   +L+AT ++  G
Sbjct: 257 KVKQIALSLNQK--------KINCGQMHSDLAQAERDEMMFKFKSGQIDVLVATDILARG 308

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           ID+ D +++I  +  H     +H++ GR  R +   S I   +             L+ 
Sbjct: 309 IDIDDIAMVINYDVPHDAEDYVHRI-GRTARADRKGSAITFVNEDDIYYFQQIEKFLEK 366


>gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 487

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/367 (20%), Positives = 129/367 (35%), Gaps = 40/367 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAQAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPQASTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    ++ Y ++T +   ++ G +    + + L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRR----GVEILI 142

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D +Q     L  V     DE  R      L   Q       +L       +TL
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQ------RILNLLPKERQTL 196

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I K+      R P    +   N     + ++   ++EG K   +   I E+
Sbjct: 197 LFSATFSGEIKKLAATYL-RNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQLIRER 255

Query: 496 K------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +    R     E        IHG  S  ++   +D+FK G  + L+AT 
Sbjct: 256 SLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRGEIEALVATD 315

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +   +I  +        +H++ GR GR       + L  P   K       
Sbjct: 316 VAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIEK 374

Query: 610 VLKNTED 616
           ++K   D
Sbjct: 375 LIKRPLD 381


>gi|189351106|ref|YP_001946734.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|189335128|dbj|BAG44198.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 487

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 126/364 (34%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAQAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    +    +  ++  +   D+    ++++   G K   +
Sbjct: 203 SPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      + IHG  S +++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGATGDALSLCSPNERKQLADIE 373

Query: 609 SVLK 612
            ++K
Sbjct: 374 KLIK 377


>gi|119499061|ref|XP_001266288.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Neosartorya fischeri NRRL 181]
 gi|142985577|sp|A1D071|FAL1_NEOFI RecName: Full=ATP-dependent RNA helicase fal1
 gi|119414452|gb|EAW24391.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Neosartorya fischeri NRRL 181]
          Length = 399

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVVRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + L+       H++ GT     D
Sbjct: 101 PTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQ----HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 157 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E I++  + +  E  K   +C   +      
Sbjct: 208 LPYDVLDMTTKFMT-DPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQ 266

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 267 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 326

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 327 GIDVQQVSLVINYDLPTNRENYIHRI-GRSGRFGRKGVAINFVTSD 371


>gi|300690871|ref|YP_003751866.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           PSI07]
 gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           PSI07]
          Length = 495

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 129/361 (35%), Gaps = 34/361 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q +AI  ++           +     G+GKT    + +   +              
Sbjct: 38  PTPIQAAAIPVVVAGRDV------MGAAQTGTGKTAGFSLPIIQNLLPEANTSASPARHP 91

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q Y+ + KY + T +   ++ G +    + + L R       I++ 
Sbjct: 92  VRALILTPTRELADQVYDNVAKYGKYTALRSAVVFGGVDMNPQTEQLRR----GVEILVA 147

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +Q   + L  V          R+           ++       +TL+ ++  
Sbjct: 148 TPGRLLDHVQQRSVNLSQV-RMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSATF 206

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--- 498
             +I K+        P    +   N   + + ++   + +G K   +   + ++ E    
Sbjct: 207 SPEIKKLAASYLRH-PQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQRAEQGLP 265

Query: 499 -------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N +    R     E    +   IHG  +  ++   +++FK GT  +L+AT V 
Sbjct: 266 SQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGTVDVLVATDVA 325

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     +I  +        +H++ GR GR       + L+ P   +       ++
Sbjct: 326 ARGLDISQMPCVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLFAPGDERLLADIEKLI 384

Query: 612 K 612
           K
Sbjct: 385 K 385


>gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
 gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
          Length = 570

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 149/449 (33%), Gaps = 86/449 (19%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + +  PT  Q +AI  +L           + Q   G+GKT    + +   +  G   
Sbjct: 31  LAELGYEEPTPIQRAAIPPLLDG------CDVVGQAATGTGKTAAFALPVLHRIRDGERG 84

Query: 322 -----------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                        AV++ P   LA Q  E +++Y +   + V  + G    + + +ALE 
Sbjct: 85  ERGARAQRGAAPSAVVLVPTRELAAQVCEAMRRYGRRLGVRVLPVYGGQSMSRQLRALEE 144

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPH 422
                  +++ T     D +    L        +L   DE    G  + +    + T   
Sbjct: 145 ----GVDVVVATPGRALDHLSRGSLDLSALRMVVLDEADEMLDMGFAEDIDTILERTPDD 200

Query: 423 --VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              +L +AT  PR   L      D  +I           +    ++     I +   V+ 
Sbjct: 201 RQTMLFSATMPPRIAGLVRRYLRDPRRIE---------LSRAESLDGDAASITQTAYVVP 251

Query: 481 EGKKAYWI--CPQIEEKKE----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
            G K   +     IE  +        R  V+R              +HG M    +  V+
Sbjct: 252 RGHKPAALGRVLDIETPEATVVFCRTREEVDRLTETMNGRGYRAEALHGGMDQHQRNRVV 311

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
              + GT  L++AT V   G+D+   + ++  +        +H++ GRVGR     S I 
Sbjct: 312 GRLRTGTADLVVATDVAARGLDIDQLTHVVNYDVPSAPEVYVHRI-GRVGRAGRQGSAIT 370

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEE-----DLKQRKEGEILGIKQSGMPKFLIAQP 649
           L  P      +  +  ++      +   +     DL+ R+                    
Sbjct: 371 LAEPGE----HRMIKAIERVTGQPVPIRKLPTVADLRARR-------------------- 406

Query: 650 ELHDSLLEIARKDAKHILTQDPDLTSVRG 678
                 LE+ R   + +L  D DL   R 
Sbjct: 407 ------LELTRAALREVLAGDEDLDRYRA 429


>gi|90579695|ref|ZP_01235504.1| ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90439269|gb|EAS64451.1| ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 455

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 153/373 (41%), Gaps = 41/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           SPT  QE AI   L     KN M        G+GKT   ++ +   ++ G        +A
Sbjct: 23  SPTPIQEKAIPVALTG---KNLMAA---AQTGTGKTAGFVLPILQMLDDGTKVRAKRIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+AP   LA Q  + IK+Y+++  +    + G +    +++ L         I++ T  
Sbjct: 77  LILAPTRELAVQVEDNIKQYSKHLNLTSMAMYGGVDYEPQKRRLIE----GVDILVATPG 132

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I +  + ++++DE  R      ++   K       ++   P+ R  +L S
Sbjct: 133 RLLDMYTKRAIHFDAIEILVLDEADRMLDMGFIEDINK-------IVERLPVDRQNMLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
               D  +   K A R PI+  +      D  I++  V + +  K+  +   I+E+K   
Sbjct: 186 ATLSDQVRFLAKTAVRNPIEISVAKDASADPKIDQWLVTVDKDMKSALLSHLIQEQKWDQ 245

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    +  +  E    S    H   S   +  +++ FKNG  + LIAT V   
Sbjct: 246 ALIFIETKHGAAKLVTQLEKRGISAESFHSGRSQAVRSQLLEDFKNGKLQYLIATGVASR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+   + ++  +        +H++ GR GR       I       S++++  L ++++
Sbjct: 306 GIDIEQLTRVVNYDLPFPPEEYVHRI-GRTGRAGASGEAISFV----SRDNFKNLCMIES 360

Query: 614 TEDGFLIAEEDLK 626
              G LI  ++++
Sbjct: 361 LL-GHLITRKEVE 372


>gi|24374367|ref|NP_718410.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24348927|gb|AAN55854.1|AE015722_4 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 449

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 139/388 (35%), Gaps = 42/388 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ ++ Q +      +PT  QE A+   L           +     GSGKTL  L+  
Sbjct: 6   FSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKD------LMASSKTGSGKTLAFLLPA 59

Query: 315 AAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              V       +   + +I+ P   LA Q Y  ++    NTQ     + G      + KA
Sbjct: 60  LQRVISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKAT 419
           L +    + H I+ T     D ++   L        IL   D     G   +LK   +A 
Sbjct: 120 LAK----EPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAA 175

Query: 420 AP---HVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  L+ +AT        +    L +     I    A  + I   I   + +D    
Sbjct: 176 DHKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEA 235

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L  +LS+      I            R+  ER  +       + A + G +    +  +
Sbjct: 236 LLSRLLSDESHKQVIIFT-------ATRADTERLAAKLSAQGFATAALSGELKQAARNQI 288

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           MD F  G  ++L+ T V   G+D+++ S++I  +   F    +H++ GR GR       I
Sbjct: 289 MDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDAI 347

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            L  P    +       L+ T   F I+
Sbjct: 348 SLVGPKDWDSFKKVQLFLRKT---FEIS 372


>gi|194334361|ref|YP_002016221.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           aestuarii DSM 271]
 gi|194312179|gb|ACF46574.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii
           DSM 271]
          Length = 418

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 62/362 (17%), Positives = 136/362 (37%), Gaps = 39/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           +PT  Q  AI  IL+          +     G+GKT    I +   +        +   +
Sbjct: 23  TPTPIQAEAIPVILEG------SDLLGCAQTGTGKTAAFAIPLLQLLSERNTYEKKRKIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA Q  E  K Y ++T +   +I G + Q  +  +L         I++ T 
Sbjct: 77  ALVVTPTRELAIQIGESFKAYGRHTGLTNRVIFGGVNQNPQAASLRN----GVDIVVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      +    + ++++DE  R      +   +K       ++ A P   ++L  
Sbjct: 133 GRLLDLMGQGHLHLRDVEILVLDEADRMLDMGFIHDIRK-------ILAALPEKKQSLFF 185

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           ++    +I ++        P K  + P++   E I++    + +G K   +   ++++  
Sbjct: 186 SATMPSEIVRLAGT-ILHNPAKVSVTPVSSTVETIQQQVYFVDKGNKNRLLVHLLKDQSI 244

Query: 497 -----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                 +  +   ++          +   IHG      ++  +++FK  + ++L+AT + 
Sbjct: 245 KTALVFTRTKHGADKVVKFLLKHDITAEAIHGNKGQNARQRALNNFKKQSTRVLVATDIA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV   + +I  +  +     +H++ GR GR     + I                ++
Sbjct: 305 ARGIDVDALAYVINFDMSNMAETYVHRI-GRTGRAGAEGTAISFCDAEEKAYLCDVEKLI 363

Query: 612 KN 613
             
Sbjct: 364 AK 365


>gi|190573992|ref|YP_001971837.1| ATP-dependent RNA helicase DbpA [Stenotrophomonas maltophilia
           K279a]
 gi|190011914|emb|CAQ45535.1| putative ATP-dependent RNA helicase [Stenotrophomonas maltophilia
           K279a]
          Length = 458

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 88/466 (18%), Positives = 165/466 (35%), Gaps = 57/466 (12%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
               Q  L  + ++  T  Q  ++  IL           I Q   GSGKT    + +  +
Sbjct: 10  SPALQPGLDALGYTTLTPVQAQSLPAILNGRDV------IAQAPTGSGKTAAFGLGLLQS 63

Query: 318 VEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++      QA+++ P   LA Q  + I+K    T I    +   +        L  +   
Sbjct: 64  IDPSLIRVQALVLCPTRELADQVGKQIRKLA--TGIPNLKLLLLVGGVPLGPQLASLEGH 121

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHV--L 424
             H+++GT    Q+  +   L L  V        D     G ++ ++     T      L
Sbjct: 122 DPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAGRTHKDRQSL 181

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKP-IKTVIIPINRIDEVIERLKVVLSEGK 483
           L +AT       +      D  ++T + A + P I+ +   +           ++L    
Sbjct: 182 LFSATFPDSIRAMARDLLRDAVEVTVEGADQAPAIRHLFCEVEPAHRQKALAGLLLKYTP 241

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           ++  +          N R  V+   +  + F  S   +HG M   D+E V+    N +C 
Sbjct: 242 ESAVVF--------CNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCN 293

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+A+ V   G+DV D + +I         +  H++ GR GR       I L        
Sbjct: 294 VLVASDVAARGLDVEDLAAVINYELPTDVESYQHRV-GRTGRAGASGLAISLVAGREKTR 352

Query: 604 SYTRLSVLKNTEDGFLI-------------AEEDLKQ-------RKEGEILG--IKQSGM 641
           +    + +    D                 A   L+         + G+ILG     +G+
Sbjct: 353 AEAIEAQMGQPLDWQKTPLATSRPAELPQAAMRTLRIDGGKTDKLRPGDILGALTGDAGL 412

Query: 642 PKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
               I +  +    S + IAR+ A   + +  +   ++G+  R+ +
Sbjct: 413 SSKFIGKIAIFPTRSYVAIAREQANKAVAKL-EAGKIKGRRFRVRM 457


>gi|2370593|emb|CAA73168.1| translation initiation factor eIF4A II [Xenopus laevis]
          Length = 413

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/350 (21%), Positives = 135/350 (38%), Gaps = 37/350 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AI      M        I Q   G+GKT    I++   +E      QA+++A
Sbjct: 60  KPSAIQQRAI------MPCIKGYDVIAQAQSGTGKTATFAISILQQIELDMKATQALMLA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + +               G        + L+  A    HII+GT     D
Sbjct: 114 PTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQSEA---PHIIVGTPGRVFD 170

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            +    L        +L   DE    G + ++          VL M A    + ++L++ 
Sbjct: 171 MLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDI----FQKVLSMNA----QVVLLSAT 222

Query: 441 GDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
              D+ ++T+K   R PI+ ++      ++ + +    V  E  K   +C   E      
Sbjct: 223 MPADVLEVTKKFM-RDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQ 281

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++ +M  F++G+ ++LI T ++  
Sbjct: 282 AVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 341

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           GIDV   S++I  +        +H++ GR GR       I +      + 
Sbjct: 342 GIDVQQVSLVINYDLPTNRENYIHRI-GRGGRFGWKGVAINMVTEDDKRT 390


>gi|225022855|ref|ZP_03712047.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944379|gb|EEG25588.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 715

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 126/344 (36%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +P+  Q   I  +L           +     G+GKT    + + + ++A     QA+I+A
Sbjct: 101 TPSPIQAQTIPVLLDGHDV------LGLAQTGTGKTAAFALPILSLIDAEIRHPQALILA 154

Query: 329 PIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           P   LA Q  +  + +  +    I V  I G      +   L R     A I++GT    
Sbjct: 155 PTRELALQVADSFQVFVDHLDGDISVLPIYGGQAYGIQLSGLRR----GAQIVVGTPGRV 210

Query: 387 QDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPI--PRT 434
            D ++           L+L   DE    G Q+ +   L        V L +AT     R 
Sbjct: 211 IDHLEKGSLDISELRFLVLDEADEMLNMGFQEDVERILADTPEEKQVALFSATMPSGIRR 270

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L    + D    ++  +      I    + +   +++    +++     +A  +  +   
Sbjct: 271 LSKQYMNDPHEIQVKSETRTNTNITQRFLNVAHRNKLDALTRILEVTEFEAMIMFVRT-- 328

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +   E           + A I+G ++   +E  ++  K+G   +L+AT V   G
Sbjct: 329 ------KFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDILVATDVAARG 382

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +DV   S ++  +      + +H++ GR GR       IL   P
Sbjct: 383 LDVERISHVLNYDIPSDTESYVHRI-GRTGRAGRSGEAILFVTP 425


>gi|197336796|ref|YP_002158115.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
 gi|197314048|gb|ACH63497.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
          Length = 460

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 134/374 (35%), Gaps = 27/374 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------EAGGQA 324
            PT+ Q  A+   +           +     GSGKTL  ++ M           +   +A
Sbjct: 38  KPTEIQRKAVPVAIAGKDV------LASSKTGSGKTLAFVLPMLHKSLKTKSFSKNDPRA 91

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI+AP   LA+Q Y  ++           +ITG      +  AL +        I+ T  
Sbjct: 92  VILAPTRELAKQVYSHLRAMLGGLTYDATLITGGENFNDQVNALRK----HPKFIVATPG 147

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D +++  L L  ++        + L L        +    +    +TL+ ++  D D
Sbjct: 148 RLADHLEHQSLYLDGLETLILDEADRMLDLGFAEHLQKIHKAASHRRRQTLMFSATLDHD 207

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---- 500
                       P +  +   N   + I +   +         I  +I E ++       
Sbjct: 208 AVNKFAGNMLDNPKRISVGLSNDEHKDITQRFYLCDHLDHKQAILNKIIETEDYFQIMIF 267

Query: 501 ---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              RS  +R   L          + G M+   + ++M  F+    K+L+ T V   G+D+
Sbjct: 268 TATRSDTDRLTKLLNEENLKAVALSGDMNQTARNNIMSQFERRVHKILVTTDVASRGLDL 327

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              + +I  +        +H++ GR GR  +  + I L  P     S+ R+      +  
Sbjct: 328 TSVTHVINFDMPKHMEEYVHRV-GRTGRAGKKGTAISLVGPK-DWESFKRVETFLQQDLS 385

Query: 618 FLIAEEDLKQRKEG 631
           F + EE LK + +G
Sbjct: 386 FSVFEE-LKGKFKG 398


>gi|167844897|ref|ZP_02470405.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           B7210]
          Length = 399

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 125/368 (33%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAKAIPVVLSGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    A    +  ++  +   D+    +K++     K   +
Sbjct: 203 SPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      A IHG  S  ++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 373

Query: 609 SVLKNTED 616
            ++K T  
Sbjct: 374 KLIKRTLS 381


>gi|167814905|ref|ZP_02446585.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           91]
          Length = 411

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 125/368 (33%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAKAIPVVLSGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    A    +  ++  +   D+    +K++     K   +
Sbjct: 203 SPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      A IHG  S  ++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 373

Query: 609 SVLKNTED 616
            ++K T  
Sbjct: 374 KLIKRTLS 381


>gi|221308280|ref|ZP_03590127.1| hypothetical protein Bsubs1_02593 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312602|ref|ZP_03594407.1| hypothetical protein BsubsN3_02569 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317526|ref|ZP_03598820.1| hypothetical protein BsubsJ_02533 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321802|ref|ZP_03603096.1| hypothetical protein BsubsS_02604 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321314132|ref|YP_004206419.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|134039178|sp|P96614|CSHA_BACSU RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|291482867|dbj|BAI83942.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020406|gb|ADV95392.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5]
          Length = 494

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 86/436 (19%), Positives = 159/436 (36%), Gaps = 44/436 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           +  + F   T  Q   I   L +         I Q   G+GKT    I +   +      
Sbjct: 18  INRMGFEEATPIQAQTIPLGLSNKDV------IGQAQTGTGKTAAFGIPLVEKINPESPN 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++AP   LA Q  E + K  Q+ +  V  I G      + +AL++      +II+G
Sbjct: 72  IQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKK----NPNIIVG 127

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-- 429
           T     D I    + L  V        DE    G    +   L+   +    LL +AT  
Sbjct: 128 TPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMP 187

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            PI R +    + + +  K+  K      I+   + +    +     +++  +  +   +
Sbjct: 188 APIKR-IAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIV 246

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +       R V E   +L+    ++  I HG ++   +   +  FK G  ++L+AT
Sbjct: 247 FGRTK-------RRVDELAEALNLRGYAAEGI-HGDLTQAKRMVALRKFKEGAIEVLVAT 298

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+   + +   +      + +H++ GR GR  +    +    P          
Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRI-GRTGRAGKTGMAMTFITPREKSMLRAIE 357

Query: 609 SVLKNTEDGFLIAEED--LKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE-----IARK 661
              K   D       D  L+ +++  +  ++ +     L         LLE         
Sbjct: 358 QTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDHDAVTVVA 417

Query: 662 DAKHILTQDPDLTSVR 677
            A  + T++PD T VR
Sbjct: 418 AAIKMATKEPDDTPVR 433


>gi|114777669|ref|ZP_01452629.1| putative ATP-dependent RNA helicase [Mariprofundus ferrooxydans
           PV-1]
 gi|114551885|gb|EAU54419.1| putative ATP-dependent RNA helicase [Mariprofundus ferrooxydans
           PV-1]
          Length = 415

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 134/371 (36%), Gaps = 43/371 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           LR + F   T  Q  AI  I++          +     G+GKT    I +   +      
Sbjct: 16  LRALGFKRTTDIQFKAIPSIMEGEDV------LAIAQTGTGKTAAFAIPVIDKIHRFKTN 69

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G + ++M P   LA Q  +  +    +T++ V  + G +    + + + ++  G  
Sbjct: 70  SQSYGIKCIVMVPTRELALQIGKVFESLANHTRVKVFTLHGGV---EQERQIAKLQDG-I 125

Query: 377 HIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            ++I T     D I            L+L   D     G  + ++  +K           
Sbjct: 126 DVLIATPGRMFDLINQQAIRLEGVSTLVLDEADHMLDLGFIEDIRYIKKMLKKK------ 179

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL  ++  + +I K+       + I+  + P +RI + +    + +    K +++
Sbjct: 180 ---HQTLFFSATINDEIKKLAYSQVKSEAIRIQVSPEDRIAKNVSHFVMFVEMDDKRFFL 236

Query: 489 CPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +++  E         R   ER              IHG     ++ + M +F+ G C
Sbjct: 237 DRFLQDHPEGKVIVFVRTRVRAERVVRAMARAGFDTVSIHGDKDQDERATAMQAFRKGDC 296

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++LIAT V   GIDV D   +I  +        +H++ GR GRG ++   I         
Sbjct: 297 RVLIATDVSARGIDVPDVDFVINYDLPEKPENYVHRV-GRTGRGMKLGDAISFCSSEEKP 355

Query: 603 NSYTRLSVLKN 613
                   +  
Sbjct: 356 LLEAIEDFIAK 366


>gi|121611662|ref|YP_999469.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121556302|gb|ABM60451.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 581

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 122/348 (35%), Gaps = 42/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 23  TPTPIQAQAIPAVLAGHD------LLAGAQTGTGKTAAFTLPILHRLSQNPAAKNKFGGK 76

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G +A+++ P   LA Q  E +++Y +   I   ++ G +  A + + L+R       I++
Sbjct: 77  GIRALVLTPTRELAAQVEESVREYGKYLAIDSTVVFGGVGMAPQIERLQR----GVDILV 132

Query: 381 GTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT- 429
            T     D  Q           L+L   D     G  Q +K  L         LL +AT 
Sbjct: 133 ATPGRLLDLQQQGFVDLASVQVLVLDEADRMLDMGFIQDVKKVLALVPGDKQSLLFSATF 192

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R L  + L +    ++T + +  + I  VI P+ R  +      ++         +
Sbjct: 193 SDDIRELANSLLKNPQSIQVTPRNSTVQRIAQVIHPVGRGKKKQVLRHIIEQHDWSQVLV 252

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +         +               +   +HG  S   +   +  FKNG  + L+AT
Sbjct: 253 FTRT--------KFGANSVAEFLTKNGVNAMALHGNKSQSARTQALADFKNGDIRALVAT 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            +   GID+ +   ++     +     +H++ GR GR       + L 
Sbjct: 305 DIAARGIDIDELPHVVNYEIPNVPEDYVHRI-GRTGRAGATGQAVSLV 351


>gi|15678231|ref|NP_275346.1| EIF-4a family ATP-dependent RNA helicase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621248|gb|AAB84709.1| ATP-dependent RNA helicase, eIF-4A family [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 425

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 74/354 (20%), Positives = 123/354 (34%), Gaps = 31/354 (8%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++ G I + +      S T  Q   +   L  M        + +   G+GKT    I +
Sbjct: 9   FDISGDINRALDDMGFESTTPIQALTLPVTLDGMDV------VGEAQTGTGKTAAFAIPV 62

Query: 315 AAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
              +EA    QA+I+ P   L  Q  E IK+  +  ++ V  + G     ++   L R  
Sbjct: 63  LENLEAERVPQALIICPTRELCLQVSEEIKRIGKYMKVKVLAVYGGQSIGNQIAQLRR-- 120

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPH 422
               H+I+ T     D I+   + L  +        DE    G    +   L+       
Sbjct: 121 --GVHVIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQ 178

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            +L +AT     L +      +   +  +      I          D+V     ++ S  
Sbjct: 179 TMLFSATVSKPILRIARKYMRNPQVMRVEKKHSPKIDEFYFKTREEDKVELLDWILSSNN 238

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            +   I          N +  V+R          S   IHG +S   +E VM+ F+ G  
Sbjct: 239 IRMGLIF--------CNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDF 290

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            LL+AT V   GI V D   ++  +        +H++ GR GR         L 
Sbjct: 291 SLLVATDVAARGIHVPDVEAVVNYDLPFENEYYVHRI-GRTGRAGSSGKSFTLV 343


>gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
           HB-1]
 gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
           HB-1]
          Length = 417

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 82/365 (22%), Positives = 139/365 (38%), Gaps = 34/365 (9%)

Query: 251 IGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
           +    +   +  QK L  + F  PT  Q+ AI   L+          + Q   G+GKT  
Sbjct: 1   MEFSFSQLDERIQKSLEEMGFVEPTPIQKEAIPLALEGHD------LVGQAQTGTGKTAA 54

Query: 310 ALIAMAAAV---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
             I + + +   E G +A+++ P   LA Q    +    +N  +    I G +    +  
Sbjct: 55  FGIPLVSGISPRERGVKAIVLTPTRELAIQVAHELSLIGKNKGVSAFPIYGGVSIERQIN 114

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGV--QQRLKLTQ 416
           AL+R   G+  II+GT    +D I    L        +L   D+    G        L++
Sbjct: 115 ALKR---GRHQIIVGTPGRVKDLINRGVLRLDRVRYAVLDEADQMLDMGFIEDIEEILSK 171

Query: 417 KATAPHVLLMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                  LL +AT     R L+   L     +    K      +K  II +   D++   
Sbjct: 172 TPKEKQTLLFSATMPYEIRRLIGRYLKPDYKNVKVGKQLITPKVKQRIILVRSEDKIKAL 231

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
            K++      +  +  + +       + +  R          +   IHG +S   +E VM
Sbjct: 232 EKLLKEHEGVSTIVFVKTKRDAADIEKELQRR--------GINARAIHGDLSQRQREFVM 283

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +F+ G  K+L+AT V   GID+ D  ++I         + +H++ GR GR       I 
Sbjct: 284 RAFREGKVKVLVATDVAARGIDIKDVGLVINYELPENPESYVHRI-GRTGRAGREGLAIS 342

Query: 595 LYHPP 599
           L   P
Sbjct: 343 LVAEP 347


>gi|258645737|ref|ZP_05733206.1| ATP-dependent RNA helicase DeaD [Dialister invisus DSM 15470]
 gi|260403106|gb|EEW96653.1| ATP-dependent RNA helicase DeaD [Dialister invisus DSM 15470]
          Length = 424

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/351 (19%), Positives = 127/351 (36%), Gaps = 24/351 (6%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           PT  Q+++I  I +          I + + G+GKTL  L+ +   V+    G Q +IM P
Sbjct: 25  PTVIQQASIPAIFKGKD------IIGRSETGTGKTLAYLLPLVQRVDVKKGGTQVLIMTP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q ++ ++ +    +  V  I G     ++ + L+R    + HIIIGT     D 
Sbjct: 79  TRELAKQIFDVLRPFAILMEADVADIIGGRTIENQIQKLKR----EPHIIIGTPGRLLDH 134

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   L L  V         Q L           L+       + L+ ++    +  K+ 
Sbjct: 135 IRRRSLDLSGVKTVVLDEADQMLA-AGFREDIDALVDETPKKRQVLLFSATMPPEAKKLA 193

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK-------KESNFRS 502
            K    K      +    +   +E+      +  K   +   ++E          +    
Sbjct: 194 HKY--MKSAVVADVAEKAVASTVEQRVYETVKTHKFSLLVRHLKEINPYMAVVFCNTREG 251

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             E    L E     +  IHG MS   +  V+  F+    ++L+A+ +   G+DV   + 
Sbjct: 252 AHELAGRLQEETDLVVDEIHGNMSQGQRNQVIREFEKARTQVLVASDIAARGLDVEGITH 311

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           +   +        +H++ GR GR       I    P            +K 
Sbjct: 312 VFNYDIPRNLEYYIHRI-GRTGRAGTQGVSITYATPEDILLLRKLEKAIKE 361


>gi|183222181|ref|YP_001840177.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912238|ref|YP_001963793.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776914|gb|ABZ95215.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780603|gb|ABZ98901.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 471

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/387 (17%), Positives = 142/387 (36%), Gaps = 39/387 (10%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
            Q + E    + ++  I + +       PT  Q  AI  +L +         +     G+
Sbjct: 1   MQKQIETFSDLKLDRYIQKAVAETGYTKPTPIQIQAIPLLLDNHD------LLGCAQTGT 54

Query: 305 GKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
           GKT    + M   +            +++++ P   LA Q +E    Y + TQI   +I 
Sbjct: 55  GKTAAFALPMIHNLISTRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKYTQIRTAVIF 114

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHRFGVQQR 411
           G + Q  + KA+         ++I T         Q+ +    L + ++DE  R      
Sbjct: 115 GGVGQNPQAKAIAS----GLDVLIATPGRLVDLMNQNLVSLKNLEIFVLDEADRMLDMGF 170

Query: 412 LKLTQKATAPHVLLMTATPIPRT-LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +   +K       +++  P  R  L  ++    +I K+       +PI+  + P++   E
Sbjct: 171 IHDIRK-------IISYLPKRRQNLFFSATMPPEIEKLANS-ILVEPIRIDVTPVSSTVE 222

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNF------RSVVERFNSLHEHFTSSIAIIHGR 524
           +I +  +      K   +    ++K           +    + + L         +IHG 
Sbjct: 223 LISQSVMYTELADKKNLLLHLFKDKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGN 282

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
            S   ++  ++ F++G  + L+AT +   GID+ D + +I     +     +H++ GR  
Sbjct: 283 KSQSARQRALEDFRSGKNRALVATDLAARGIDIDDITHVINYEIPYVPETYVHRI-GRTA 341

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVL 611
           R  +    I +              V+
Sbjct: 342 RAGKNGIAIAIAEADERSLIKDIEKVI 368


>gi|147834872|emb|CAN70196.1| hypothetical protein VITISV_040309 [Vitis vinifera]
          Length = 410

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/341 (19%), Positives = 127/341 (37%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----SSGVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L +T
Sbjct: 172 MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ +  +E L          Y      +   
Sbjct: 232 RKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   S++I  +        LH++ GR GR       I    
Sbjct: 345 VQQVSLVINFDLPTQPENYLHRI-GRSGRFGRKGVAINFVT 384


>gi|254230057|ref|ZP_04923456.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|151937445|gb|EDN56304.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
          Length = 471

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 165/466 (35%), Gaps = 73/466 (15%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ ++  T  Q  ++  IL+          I QG  GSGKT    + + + +      
Sbjct: 31  LDSLNYTHMTPIQALSLPAILK------HRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFR 84

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 85  VQSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 140

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++  +        L+L   D     G Q  L           ++  A    
Sbjct: 141 GTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGFQDAL---------DAIIDAAPKQR 191

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I +I ++   + P    +   +    + +    V     +   +   +
Sbjct: 192 QTLLFSATFPEKIEQIAQR-IMQTPEVIKVESTHDTSSIAQHFYKVEGSEARDEALANLL 250

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              +        N +  V+           S+  IHG +   +++  +  F N +  +L+
Sbjct: 251 LTHQPESAVVFCNTKKEVQSVADELHRKGFSVIDIHGDLEQRERDQALVQFANKSVSILV 310

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--------- 597
           AT V   G+DV +   +            +H++ GR GR          +          
Sbjct: 311 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRI-GRTGRAGSKGLAFSFFGEKDGLRVAR 369

Query: 598 --------------PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG--IKQSGM 641
                         P  S     +  ++    DG        ++ + G+ILG    ++G+
Sbjct: 370 IEEYLEMDVVPATLPAKSNQQPYQAKMVTINIDGGKK-----QKVRPGDILGCLTGKNGI 424

Query: 642 PKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           P   + +  L    + + + +  AK  L    +   ++G+  R  L
Sbjct: 425 PGSQVGKIHLFPMRAYVAVEKSAAKKALQTISN-GKMKGRQFRARL 469


>gi|167718732|ref|ZP_02401968.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           DM98]
          Length = 409

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 125/368 (33%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAKAIPVVLSGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    A    +  ++  +   D+    +K++     K   +
Sbjct: 203 SPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      A IHG  S  ++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 373

Query: 609 SVLKNTED 616
            ++K T  
Sbjct: 374 KLIKRTLS 381


>gi|107023606|ref|YP_621933.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
 gi|116690690|ref|YP_836313.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|105893795|gb|ABF76960.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
 gi|116648779|gb|ABK09420.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 486

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 124/357 (34%), Gaps = 29/357 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----------EAG 321
           SPT  Q+ AI  +L           +     G+GKT    + +   +          +  
Sbjct: 23  SPTPIQQQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHTFYAEHRGAKRA 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R       I++ 
Sbjct: 77  VRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKR----GVDIVVA 132

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +Q   + L  +D         R+           +L    P  + L+ ++  
Sbjct: 133 TPGRLLDHMQQKTIDLSDLD-ILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATF 191

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-- 499
             +I  + +      P    +   N   E + +    +   +K   +   I E       
Sbjct: 192 SDEIKALADSLLD-SPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVL 250

Query: 500 ----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +    R          S   IHG  S   +   +  FKN T ++L+AT +   GI
Sbjct: 251 VFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGI 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           D+     ++  +  +     +H++ GR GR       + L      +       ++K
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLVCVDEKQLLRDIERLIK 366


>gi|170717335|ref|YP_001784445.1| DEAD/DEAH box helicase domain-containing protein [Haemophilus
           somnus 2336]
 gi|168825464|gb|ACA30835.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336]
          Length = 601

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 131/365 (35%), Gaps = 41/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q++ I  +L           +     GSGKT    + + A ++      Q ++MA
Sbjct: 28  TPSPIQQACIPHLLNGHDV------LGMAQTGSGKTAAFSLPLLAKIDTNEKYPQMLVMA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  +++ + +  + +  + G      R     R     A +++GT     
Sbjct: 82  PTRELAIQVADACEQFVKFSKGVRIVTLYGG----QRYDIQLRALKQGAQVVVGTPGRIL 137

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D I+   L        +L   DE  R G    ++                   +T + ++
Sbjct: 138 DHIRRGTLDLSNLQSIVLDEADEMLRMGFIDDVETVMAELPEQ---------HQTALFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKKES 498
                I +IT++         +        ++ +    V      +A     ++E+   +
Sbjct: 189 TMPAPIKRITKRFMHNPQEVKIQSTQRTAPDITQSCWYVRGFRKNEALLRFLEVEDFDAA 248

Query: 499 NFRSVVERFN----SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
              +  +        L E      A ++G M+   +E  +D  +NG+  +L+AT V   G
Sbjct: 249 IIFTRTKTATLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILVATDVAARG 308

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSV 610
           +DV   S+++  +      + +H++ GR GR       IL   P     L          
Sbjct: 309 LDVERISLVVNYDIPLDAESYVHRI-GRTGRAGRAGRAILFVEPKERRLLGNIERLMKKA 367

Query: 611 LKNTE 615
           ++  E
Sbjct: 368 IEEVE 372


>gi|295402561|ref|ZP_06812510.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
 gi|294975409|gb|EFG51038.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
          Length = 465

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/343 (21%), Positives = 132/343 (38%), Gaps = 23/343 (6%)

Query: 266 LRNIPFSPT-KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           +R + F  T   Q   I   LQ+         I Q   G+GKT    I +   V+     
Sbjct: 17  IRRMGFEETTPIQAETIPLSLQNKDV------IGQAQTGTGKTAAFGIPLIEKVDVTNEA 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++AP   LA Q  E + K     ++ V  I G      + +AL++    + HII+G
Sbjct: 71  IQGLVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIGRQIRALKK----RPHIIVG 126

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D I    L L  V         + L +        +L        +TL+ ++  
Sbjct: 127 TPGRIIDHINRKTLHLENVHTVVLDEADEMLNMGFIDDIEAIL-SNVPEKRQTLLFSATM 185

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ES 498
              I +I E+    +P    +         I++  + + E KK   +   ++ +      
Sbjct: 186 PEPIRRIAERFMN-EPQIVKVKAKEMTVPNIQQYYLEVQEKKKFDILTRLLDIQAPELAI 244

Query: 499 NFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F     R + L E       +   IHG +S   + SV+  FK G+ ++L+AT V   G+
Sbjct: 245 VFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGL 304

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           D+   + +   +      + +H++ GR GR  +    +    P
Sbjct: 305 DISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKTGVAMTFVTP 346


>gi|167625028|ref|YP_001675322.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167355050|gb|ABZ77663.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 437

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 126/357 (35%), Gaps = 30/357 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
            PT  Q  AI  IL           +     G+GKT    + +   +             
Sbjct: 47  QPTAIQAEAIPAILAGRD------IMASAQTGTGKTAAFTLPLLQRLIDKSSSDEQSKAK 100

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               +++AP   LA Q    + +Y  NT +   +I G +    +   L         +I+
Sbjct: 101 RASVLVLAPTRELAVQVNTNVSQYAVNTDVSSIVIYGGVSIDAQATKLAA----GVDVIV 156

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D ++   L L  + E   F    R+         + +L       +TL+ ++ 
Sbjct: 157 ATPGRLLDHVRRGTLNLSDI-EYLVFDEADRMLDMGFMDEINAILKQLPAKRQTLLFSAT 215

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
               I ++++K   +KP++  +   N     IE++   +   +K   +C  I +      
Sbjct: 216 FSSAIFELSKK-LLQKPLRIEVDKANSAANSIEQVVYAVDSERKTELLCHLINKSAWQQV 274

Query: 500 -----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +   +                HG +    +E V++ FK G  K L+AT V   G
Sbjct: 275 LVFSRKKQTADLIAQKMLAAGIEAKAFHGDLGQGAREQVLNDFKQGKIKALVATDVAARG 334

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           +D+V+  +++           +H++ GR GR       I LY    +       SV+
Sbjct: 335 LDIVELKVVVNYEIPFVAEDYVHRI-GRTGRAGNTGKAITLYSEDDALLLEEVESVI 390


>gi|310814605|ref|YP_003962569.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare
           Y25]
 gi|308753340|gb|ADO41269.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare
           Y25]
          Length = 426

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 134/365 (36%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            PT  Q  AI   +           +     G+GKT    + M  A+          G +
Sbjct: 23  EPTPIQAQAIPHAMNGRDV------LGLAQTGTGKTAAFGLPMIDALIKDSRRAQAKGAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LA+Q  E +  YT+++ +   ++TG      + + +ER       I++ T 
Sbjct: 77  ALVLAPTRELAKQIAENLAAYTKDSHLKTVVVTGGAGIGGQIQRMERGTA----ILVATP 132

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +            L+L   D+    G    L+        +          +T+
Sbjct: 133 GRLIDLLDRKAIDLSQTEFLVLDEADQMLDLGFIHALRRIAPLLPAN---------RQTM 183

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     + ++        PI+  + P  +    I +    ++   K   +   ++  
Sbjct: 184 LFSATMPKQMEELAASFL-SNPIRVQVNPPGQAATKITQSVHFVASRAKTDLLIELLDAH 242

Query: 496 KES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           ++         +  +E+     E+   ++A IHG  S   ++  +  F+ GT ++L+AT 
Sbjct: 243 RDELALVFGRTKHGMEKLAKQLENAGYAVAAIHGNKSQGQRDRALRDFRAGTLRVLVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D   +      +     +H++ GR  R  +    +    P    +      
Sbjct: 303 VAARGLDIPDVRYVYNYELPNVPDNYVHRI-GRTARAGKDGQAVAFCAPDEMGDLRDIQK 361

Query: 610 VLKNT 614
           V+K T
Sbjct: 362 VMKTT 366


>gi|27904825|ref|NP_777951.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|31340034|sp|Q89AF9|DEAD_BUCBP RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|27904223|gb|AAO27056.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 602

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/406 (17%), Positives = 142/406 (34%), Gaps = 48/406 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q + I  +++          +     GSGKT    + +   ++      Q +++ 
Sbjct: 28  QPSPIQAACIPYLIKGKDV------LGMAQTGSGKTAAFALPLLHNIKLDVRVPQILVLT 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E    +++    + V  + G      + K+L +       II+GT     
Sbjct: 82  PTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLKSLRK----GPQIIVGTPGRLL 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT------PI 431
           D ++         + L+L   DE  R G  + +   +T+        L +AT       I
Sbjct: 138 DHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPDRHQTALFSATMPEAIRRI 197

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +         S IT +P         ++   + D +I  L+         +     
Sbjct: 198 SRRFMKNPKEIRIQSNITTRP--DIQQSYWMVYGKKTDALIRFLEAEDFSATIIFV---- 251

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    ++     + + E +  + A ++G M+   +E  ++  K+G   +LIAT V 
Sbjct: 252 -------RTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTLEKLKDGRLDILIATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+DV   S +I  +      + +H++ GR GR       +L       +        +
Sbjct: 305 ARGLDVDRISFVINYDIPMDSESYVHRI-GRTGRAGRKGKALLFVENRERRLLRNIERAM 363

Query: 612 KNTEDGFLIAEED-LKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             +     + + D L +R+   +    Q    +        +  LL
Sbjct: 364 NISISEVNLPKSDFLSKRR---LEKFAQKVQIQLDSKDLHEYRGLL 406


>gi|327190854|gb|EGE57918.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
          Length = 651

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 169/452 (37%), Gaps = 60/452 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
             T  Q+S +     D++       ++    GSGKT+   +A+A  +  G          
Sbjct: 22  ELTPVQKSMLDP---DLAAS---DALVSAQTGSGKTVAFGLALAPTLLEGSERFGNAGAP 75

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    ++   + T  ++    G M     R+ALER     AHI++GT
Sbjct: 76  LALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRALER----GAHIVVGT 131

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I+   L        +L   DE    G ++ L+           L +A    RT
Sbjct: 132 PGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFI---------LDSAPDERRT 182

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I+K+  K   R  ++       +    IE   ++++   +   I   +  
Sbjct: 183 LMFSATVPAAIAKLA-KSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLRY 241

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            + +N       R+ V    +   +   S+  + G ++  ++   + + ++G  ++ IAT
Sbjct: 242 YEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+    ++I  +        LH+  GR GR        ++      + +   L
Sbjct: 302 DVAARGIDLPGLDLVIHADLPTNPETLLHR-SGRTGRAGRKGISAMIVPLNARRKAERLL 360

Query: 609 SVLKNTEDGFL-IAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
                +       + E++ +R +  +L            A P  HD+  E  +   + +L
Sbjct: 361 ENAGISAAWARPPSAEEVNERDDERLL------------ADPIFHDAPQEEEQGLVQQLL 408

Query: 668 TQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
           +      + +  +  + LY   ++     I  
Sbjct: 409 SSH---GAEKLAAAFVRLYRTNHSAPEDLIEV 437


>gi|296102188|ref|YP_003612334.1| ATP-dependent RNA helicase DbpA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056647|gb|ADF61385.1| ATP-dependent RNA helicase DbpA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 457

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 139/358 (38%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + + + T  Q +A+  IL+    +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILEGRDVR------VQAKTGSGKTAAFGLGLLQHIDATLLQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  + +        R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKSTVSLDAL-QTLVMDEADRMLDMGFSDAIDEVIRFAPEDRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   + P+   I  ++ +   IE+     S+  K   +   + + +    
Sbjct: 187 WPDAIAAISGR-VQKNPLTIEIDSVDALP-AIEQQFFETSQQGKIPLLQKLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNYELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANILSEMLQ 361


>gi|302867898|ref|YP_003836535.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302570757|gb|ADL46959.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 585

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/354 (21%), Positives = 126/354 (35%), Gaps = 40/354 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           L  + +  PT  Q  AI  +L           + Q   G+GKT    + +   +  G   
Sbjct: 35  LSALGYEEPTPIQREAIPPLLAGQD------LLGQAATGTGKTAAFALPLLQRMPVGRAD 88

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               ++++ P   LA Q  E   +Y ++    V  I G  P   + +AL         ++
Sbjct: 89  GDPVSLVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRAL----DHGVDVV 144

Query: 380 IGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT 429
           + T     D I    L        +L   DE    G  + +   L         +L +AT
Sbjct: 145 VATPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAILEHAPAGRQTVLFSAT 204

Query: 430 PIPRTLVLTSLGDIDISKIT---EKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKK 484
              R   L      D  +I    E+P   +   ++     + R  +     +V+  E   
Sbjct: 205 MPARIDGLARQHLTDPVRIRIERERPVAGEAPRVRQSAYIVARAHKPAALGRVLDVESPT 264

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  +  +         R  V+R              +HG MS   ++ VM   + GT  L
Sbjct: 265 AAIVFCR--------SREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADL 316

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           L+AT V   G+DV   + ++  +      + +H++ GRVGR       I L  P
Sbjct: 317 LVATDVAARGLDVEQLTHVVNYDVPSAPESYVHRI-GRVGRAGREGVAITLAEP 369


>gi|213018866|ref|ZP_03334674.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212995817|gb|EEB56457.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 402

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 137/341 (40%), Gaps = 34/341 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT  Q  AI   LQ          +     G+GKTL   I + A +      G A+++ P
Sbjct: 19  PTPIQVQAIPLALQGKD------ILGSAQTGTGKTLAFAIPLVAKLMNEPSIGSALVIVP 72

Query: 330 IGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q    I+K   Q++ + V ++ G  P   +   L++    +  IIIGT     D
Sbjct: 73  TRELAHQVTSEIRKLLSQSSLLRVALLIGGEPIFRQLNQLQK----KPQIIIGTPGRIID 128

Query: 389 SIQYYKL-----ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLTSLGD 442
            I+   L      ++++DE  R          ++       +M   P I +TL+ ++   
Sbjct: 129 HIERKTLVTRNVGILVLDETDRMFDMGFGIQIEE-------IMKHLPKIRQTLMFSATLP 181

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----E 497
            +I K+TEK    +P +  +         I++  V  SE +K   +  Q+ ++K      
Sbjct: 182 GEIVKLTEKYLN-QPERVSVDCQATTSVKIKQEVVYASESEKYGKLVTQLCQRKGSIIIF 240

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ++          S   IHG +    +E V+DSF+ G  ++++AT V   G+D+
Sbjct: 241 VKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMVATDVASRGLDI 300

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                +I  +        +H++ GR  R       +    P
Sbjct: 301 PHIQHVINYDVPQSQADYVHRI-GRTARAGAEGFALSFVTP 340


>gi|330999043|ref|ZP_08322768.1| cold-shock DEAD-box protein A [Parasutterella excrementihominis YIT
           11859]
 gi|329575785|gb|EGG57311.1| cold-shock DEAD-box protein A [Parasutterella excrementihominis YIT
           11859]
          Length = 586

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 129/358 (36%), Gaps = 40/358 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EA 320
           L ++ F  PT  Q  AI  +L+          + Q   G+GKT    + +        E 
Sbjct: 19  LSSLGFEEPTPIQTKAIPVLLEGRDV------LGQAATGTGKTAAFSLPLIQRYCLDTEP 72

Query: 321 GG-QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           G  Q +I+ P   L  Q  E I  + +++ + V  + G    + + KAL R       I+
Sbjct: 73  GKPQVLILTPTRELCIQVSEAINSFARSSGVYVLPVYGGQDYSRQIKALSR----GVQIV 128

Query: 380 IGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT 429
           + T     D I+   L L  +        DE    G  + L              L +AT
Sbjct: 129 VATPGRALDHIRRGTLNLTEIKAVVLDEADEMLDMGFAEDLEAIFAALPEKRQTALFSAT 188

Query: 430 PIPRTLVLTSLGDIDISKI----TEKPAGRKP-IKTVIIPINRIDEVIERLKVVLSEGKK 484
             P+   +      D   I     + P G +P +K     + R  +     +++  E  +
Sbjct: 189 LPPKIAKIAENHLHDAFHILIPKEKVPEGEQPKVKQSAYIVGRNHKTAALGRILDIESPR 248

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              +  +         R+ V+           S+  +HG +    ++ VM   +     +
Sbjct: 249 LAIVFART--------RNEVDELAESLRGRGYSVEPLHGGLDQAQRDRVMKRARAEQVDV 300

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++AT V   GID+   + +I           +H++ GR GR     + I +  P  S+
Sbjct: 301 IVATDVAARGIDIDHLTHVINFGIPSSAETYVHRI-GRTGRAGREGTAITILEPRESR 357


>gi|323137351|ref|ZP_08072429.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
 gi|322397338|gb|EFX99861.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
          Length = 450

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 126/357 (35%), Gaps = 27/357 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q  AI  +++          +     G+GKT    + +   + A  +        
Sbjct: 24  TPTSIQAQAIPYLMEGRD------LLGIAQTGTGKTAAFALPILNRLAADRRRPAPFTAR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +  + Y Q  +  V +I G +    +   L R       +++ T 
Sbjct: 78  TLVLAPTRELAAQIADSFRAYGQFMRPSVGVIVGGVSHRPQIDMLAR----GLDVLVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D I   KL L   +          L L        + +       +TL+ ++    
Sbjct: 134 GRLLDHIASGKLKLAATEVLVLDEADHMLDLGFIVPIRQI-VAKLPKKRQTLLFSATMPK 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------ 497
           +I+ + E    + P +  + P+    E + +   ++  G K   +   + +         
Sbjct: 193 EIAGLAED-MLQNPAQVSVTPVATTAERVAQHVFLVDGGAKRDMLIELMNDADVSRAIVF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   +R     +        IHG  S   +   +D+F+ G  ++L+AT +   GIDV
Sbjct: 252 TRTKRGADRVAEHLDAAGVGAEAIHGNKSQSQRIRALDAFRKGRTRVLVATDIAARGIDV 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
              + ++         A +H++ GR  R       I L      +       + + T
Sbjct: 312 DGVTHVVNYELPETPEAYVHRI-GRTARAGASGRAISLCDNGERQLLRQIEKLTRQT 367


>gi|171317466|ref|ZP_02906657.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171097362|gb|EDT42206.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 480

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 123/357 (34%), Gaps = 29/357 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           SPT  Q+ AI  +L           +     G+GKT    + +   +             
Sbjct: 23  SPTPIQQQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHTYYAEHRGAKRA 76

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R       I++ 
Sbjct: 77  VRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----GVDIVVA 132

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +Q   + L  +D         R+           +L    P  + L+ ++  
Sbjct: 133 TPGRLLDHMQQKTIDLSNLD-ILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATF 191

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-- 499
             +I  + +      P    +   N   E + +    +   +K   +   I E       
Sbjct: 192 SDEIKSLADSLLD-SPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVL 250

Query: 500 ----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +    R          S   IHG  S   +   +  FK+ T ++L+AT +   GI
Sbjct: 251 VFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLVATDIAARGI 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           D+     ++  +  +     +H++ GR GR       + L      +       ++K
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLVCVDEKQLLRDIERLIK 366


>gi|167585895|ref|ZP_02378283.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
          Length = 487

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/364 (19%), Positives = 127/364 (34%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAQAIPVVLAGRDV------MGAAQTGTGKTASFSLPILQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYGKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    +    +  ++  +   D+    ++++ S G K   +
Sbjct: 203 SPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRSRGLKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      + IHG  + I++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGATGDALSLCSPNERKQLADIE 373

Query: 609 SVLK 612
            ++K
Sbjct: 374 KLIK 377


>gi|67528815|ref|XP_662070.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
 gi|40741041|gb|EAA60231.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
          Length = 1526

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/377 (15%), Positives = 135/377 (35%), Gaps = 52/377 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAG--------- 321
           +PT  Q+ +I  +   M+ ++ M        GSGKT   L  +   A + G         
Sbjct: 208 TPTPVQKYSIPIV---MNGRDLM---ACAQTGSGKTGGFLFPILSQAYQNGPAAPPPSAA 261

Query: 322 ----------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                       ++I+AP   L  Q ++  +K+   + +   ++ G      + + +ER 
Sbjct: 262 GQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIER- 320

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHV 423
                 +++ T     D I+  +        LIL   D     G + +++   +      
Sbjct: 321 ---GCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGED--- 374

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
             M      +TL+ ++    DI  +  +   +  +   +  +    E I +    + +  
Sbjct: 375 --MPNVNDRQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEYVEDHD 431

Query: 484 KAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           K   +   +     +         + + +  +    +       IHG  +  ++E  ++ 
Sbjct: 432 KRSVLLDILHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEM 491

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F++G   +L+AT V   G+D+ + + +I  +        +H++ GR GR          +
Sbjct: 492 FRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGIATAFF 550

Query: 597 HPPLSKNSYTRLSVLKN 613
           +          + +LK 
Sbjct: 551 NRGNRGVVRDLIDLLKE 567


>gi|237831253|ref|XP_002364924.1| ATP-dependent helicase, putative [Toxoplasma gondii ME49]
 gi|211962588|gb|EEA97783.1| ATP-dependent helicase, putative [Toxoplasma gondii ME49]
 gi|221487231|gb|EEE25477.1| ATP-dependent helicase, putative [Toxoplasma gondii GT1]
 gi|221506914|gb|EEE32531.1| ATP-dependent helicase, putative [Toxoplasma gondii VEG]
          Length = 395

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 136/370 (36%), Gaps = 37/370 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+ AI  I++          I+Q   G+GKT V  +     ++      QA+I++P
Sbjct: 45  PSAVQQRAIVPIMKGRDV------IVQSQSGTGKTCVFCLGCLQCIDPKVRDPQALILSP 98

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  +          + V    G        +ALE       HI+ GT       
Sbjct: 99  TRELAEQSQKVCLALGDYMSVQVHCCIGGKRVGDDIRALEA----GVHIVSGTPGRVFHM 154

Query: 390 IQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLTS 439
           I            L+L   DE    G ++++    +    +  V+L++AT     L +T+
Sbjct: 155 IAQRHFSTRHIKLLVLDEADEMLNRGFKEQVYDIYRYLPPSTQVVLVSATLPHEVLEMTT 214

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEK 495
               D  ++  K      + IK   + + R     + L  +       +A   C      
Sbjct: 215 KFMDDPFRVLVKRDELTLEGIKQFFVAVEREQWKFDTLTDLYDTLTITQAVIFCNT---- 270

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++ VE      +    +++ +HG M   +++ +M  F+ G  ++LIAT V   G+
Sbjct: 271 -----KAKVEWLAQKMKEANFTVSRMHGDMPQQERDEIMRQFRGGQSRVLIATDVWGRGL 325

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S++I  +  +     +H++ GR GR       I        +             
Sbjct: 326 DVQQVSLVINYDLPNSRELYIHRI-GRSGRFGRKGVAINFVKNDDIRILRDIEQYYATQI 384

Query: 616 DGFLIAEEDL 625
           D   +   DL
Sbjct: 385 DEMPMNVADL 394


>gi|170025939|ref|YP_001722444.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis YPIII]
 gi|169752473|gb|ACA69991.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 664

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 149/415 (35%), Gaps = 49/415 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++A    
Sbjct: 22  LTDLGYEKPSPIQLECIPHLLNGRDV------LGMAQTGSGKTAAFGLPLLHNIKADLKS 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       +++
Sbjct: 76  PQVLVLAPTRELAVQVAEALSSFSKHINGVKVVALYGG----QRYDVQLRALRQGPQVVV 131

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 132 GTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATM 191

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +    V     + + ++  L+    +   
Sbjct: 192 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALVRFLEAEDFDAAI 251

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +               + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 252 IFV----------RTKNATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 300

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 301 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 359

Query: 605 YTRLSVLKNTEDGFLIAEEDL--KQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
                 +K T     +   DL  ++R       + Q    +   +  +++ +LL 
Sbjct: 360 QNIERTMKLTIPEVELPNADLLSERRLAKFAAKVSQ----QLESSDLDMYRALLA 410


>gi|119774410|ref|YP_927150.1| DEAD/DEAH box helicase-like protein [Shewanella amazonensis SB2B]
 gi|119766910|gb|ABL99480.1| DEAD/DEAH box helicase-like protein [Shewanella amazonensis SB2B]
          Length = 456

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 138/381 (36%), Gaps = 39/381 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ ++ Q +      +PT  Q  AI   L           +     GSGKTL  L+  
Sbjct: 6   FSLDKRLMQSLKHMGIETPTPIQSQAIPVALAGKD------LMASSKTGSGKTLAFLLPA 59

Query: 315 AAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              V       +   + +I+ P   LAQQ Y  ++    NTQ     + G      + KA
Sbjct: 60  MQRVISSKALSKKDPRVLILLPTRELAQQVYAQLRLLVANTQYRAISVLGGENFNDQAKA 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKAT 419
           L R    + H I+ T     D +Q   L        +L   D     G   +LK    A 
Sbjct: 120 LAR----EPHFIVATPGRIADHLQQRHLFLNGLELLVLDEADRMLDLGFAPQLKAINAAA 175

Query: 420 AP---HVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  L+ +AT        L    L + +   I     G   I+  I+  + ++    
Sbjct: 176 DHRRRQTLMFSATLEHGEVHELAAELLKEPEHVAIDAVHLGHGDIEQQILLADHLEHKEA 235

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L+ +LS       +            R   ER  +L      + A + G +    +  +
Sbjct: 236 LLERLLSGNNFRQVMIFT-------ATRQDTERLATLLAEKGYNTAALSGELRQAQRNQI 288

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           MDSF     ++L+ T V   G+D+ + S+++  +   F    +H++ GR GR     + I
Sbjct: 289 MDSFSREHHRILVTTDVASRGLDISNVSLVVNFDMPKFAEEYVHRI-GRTGRAGNKGTAI 347

Query: 594 LLYHPPLSKNSYTRLSVLKNT 614
            L  P    N      +L+ T
Sbjct: 348 SLVGPKDWDNFLKVQILLQKT 368


>gi|307566011|ref|ZP_07628469.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS
           21A-A]
 gi|307345199|gb|EFN90578.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS
           21A-A]
          Length = 567

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 135/368 (36%), Gaps = 48/368 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------VIM 327
           T  QE  I  IL+          +     G+GKT   L+ + + +  G  A      VIM
Sbjct: 25  TPVQEKCIPLILKGKD------ILAVAQTGTGKTAAYLLPILSKLAKGNYADDAINCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +P   LAQQ  + I+ ++     I    + G        + ++ ++ G A+I+I T    
Sbjct: 79  SPTRELAQQIDQAIQGFSYYLNGISCVAVYGGNDGNRYDQEIKSLSMG-ANIVIATPGRL 137

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRT-- 434
              I    +        +L   D     G  + +K+       +   ++ +AT   +   
Sbjct: 138 ISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKMIANNLPKSCQTIMFSATMPNKIES 197

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC----- 489
           L  + L + +I K+                +++  E I++   +  E +K   I      
Sbjct: 198 LAKSLLKNAEIIKLA---------------VSKPAEKIQQSAYICYETQKIGIIKEIFKS 242

Query: 490 -PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    S  +  V++  +           +H  +    ++ VM  FK+    +L+AT
Sbjct: 243 GNLKRVIIFSGSKQKVKKITASLNKQNIKCGEMHSDLDQAQRDDVMFKFKSSQIDVLVAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            ++  GID+ D +++I  +  H     +H++ GR  R +   + I               
Sbjct: 303 DIVARGIDIDDIAMVINYDVPHDVEDYVHRI-GRTARADREGNAITFVSEEDIYYFRHIE 361

Query: 609 SVLKNTED 616
           S LK T D
Sbjct: 362 SFLKKTID 369


>gi|229522511|ref|ZP_04411927.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|229340496|gb|EEO05502.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
          Length = 416

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 143/366 (39%), Gaps = 35/366 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 32  QPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 85

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +    + G + +A ++ AL        +I++ T     D 
Sbjct: 86  TRELAMQVSDVLTHVGTPLGLNTLCLCGGVDKAEQQNALAE----NPNILVATTGRLFDL 141

Query: 390 IQ----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            Q      ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 142 TQSGLSLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTASVRQTVMCSATFSDD 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 195 LKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 254

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S  ++E+ +  FKNGT ++LIAT ++  GI +  
Sbjct: 255 AKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGTTQVLIATDLLARGIHIEQ 314

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPLS----KNSYTRLSVLKNT 614
             ++I           +H++ GR  R  +    + L+ H  +       + T+  +    
Sbjct: 315 LPVVINFELPMHAETYVHRV-GRTARAGQQGIALSLVCHGEMDALNAIRTLTQRQLPVQN 373

Query: 615 EDGFLI 620
            DGF +
Sbjct: 374 LDGFPV 379


>gi|90578695|ref|ZP_01234505.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein [Vibrio
           angustum S14]
 gi|90439528|gb|EAS64709.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein [Vibrio
           angustum S14]
          Length = 427

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 74/384 (19%), Positives = 138/384 (35%), Gaps = 56/384 (14%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----- 319
           L  + + +PT  Q+ AI   L+          +     G+GKT    + +   +      
Sbjct: 16  LTELGYSTPTDVQQQAIPLALKG------DDVMAGAQTGTGKTAAFALPLLQRLMTLPSQ 69

Query: 320 ---------------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
                             +A+I+ P   LAQQ Y+ I  Y + T+I V +  G      +
Sbjct: 70  AEQVSTAIENNHKSRNNIRALILTPTRELAQQVYDSITTYAKYTEIKVAVAYGGTSMNVQ 129

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKAT 419
            KAL    +  A I++ T     D +    + L  V     DE  R      +   Q+  
Sbjct: 130 VKAL----NAGAEILVATPGRLLDHVFNGSVSLSEVETFVLDEADRMLDMGFIVDIQR-- 183

Query: 420 APHVLLMTATP-IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                +M   P   +TL  ++     + K+        P    + P N   E +E++   
Sbjct: 184 -----IMKRMPAERQTLFFSATFSKQVKKLAFD-ILTNPKMVEVTPANTAAETVEQMVYP 237

Query: 479 LSEGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           + + +KA  +   I  +           +   ++            + I+G  S   ++ 
Sbjct: 238 VDKHRKAELLAYLIGSRNWRQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQR 297

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            +D FK+G  ++L+AT V   G+D+     ++  +        +H++ GR GR       
Sbjct: 298 ALDDFKSGKTRVLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRI-GRTGRAGMTGHA 356

Query: 593 ILLYHPPLSKNSYTRLSVLKNTED 616
           I L    +S +    L  ++   D
Sbjct: 357 ITL----MSLDEEWALKAIEELLD 376


>gi|221211662|ref|ZP_03584641.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
 gi|221169023|gb|EEE01491.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
          Length = 495

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 126/364 (34%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAQAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    +    +  ++  +   D+    ++++   G K   +
Sbjct: 203 SPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      + IHG  S +++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGATGDALSLCSPNERKQLADIE 373

Query: 609 SVLK 612
            ++K
Sbjct: 374 KLIK 377


>gi|253991496|ref|YP_003042852.1| ATP-dependent RNA helicase DeaD [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638374|emb|CAR66996.1| cold-shock dead box protein a (ec 3.6.1.-) (atp-dependent rna
           helicas dead) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782946|emb|CAQ86111.1| cold-shock dead box protein A [Photorhabdus asymbiotica]
          Length = 635

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 77/409 (18%), Positives = 152/409 (37%), Gaps = 40/409 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q+  I  +L           +     GSGKT    + +   + A    
Sbjct: 27  LEDLGYEKPSPIQQQCIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLHNINAELKA 80

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    ++++ + + V  + G      R     R       I++
Sbjct: 81  PQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGG----QRYDVQLRALRQGPQIVV 136

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   ++Q        L +AT 
Sbjct: 137 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATM 196

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + D    +I      R  I      +  + +    ++ + +E   A  I
Sbjct: 197 PEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAII 256

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +LIAT
Sbjct: 257 FVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDILIAT 308

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 309 DVAARGLDVERISLVVNYDIPMDAESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNVE 367

Query: 609 SVLKNTEDGFLIA-EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             +K T     +   E L QR+  +     Q    +   +  + + +LL
Sbjct: 368 RTMKLTIPEVELPNAELLSQRRLEKFAANVQ---QQLESSDLDQYRALL 413


>gi|238502855|ref|XP_002382661.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus flavus NRRL3357]
 gi|317027125|ref|XP_001400167.2| ATP-dependent RNA helicase FAL1 [Aspergillus niger CBS 513.88]
 gi|317148165|ref|XP_001822547.2| ATP-dependent RNA helicase FAL1 [Aspergillus oryzae RIB40]
 gi|152032452|sp|A5AAE5|FAL1_ASPNC RecName: Full=ATP-dependent RNA helicase fal1
 gi|220691471|gb|EED47819.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus flavus NRRL3357]
          Length = 399

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVVRESQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + L+       H++ GT     D
Sbjct: 101 PTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQ----HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 157 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E I++  + +  E  K   +C   +      
Sbjct: 208 LPYDVLDMTTKFMT-DPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQ 266

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 267 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 326

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 327 GIDVQQVSLVINYDLPTNRENYIHRI-GRSGRFGRKGVAINFVTSD 371


>gi|315505697|ref|YP_004084584.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315412316|gb|ADU10433.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 585

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/354 (21%), Positives = 126/354 (35%), Gaps = 40/354 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           L  + +  PT  Q  AI  +L           + Q   G+GKT    + +   +  G   
Sbjct: 35  LSALGYEEPTPIQREAIPPLLAGQD------LLGQAATGTGKTAAFALPLLQRMPVGRAE 88

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               ++++ P   LA Q  E   +Y ++    V  I G  P   + +AL         ++
Sbjct: 89  GDPVSLVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRAL----DHGVDVV 144

Query: 380 IGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT 429
           + T     D I    L        +L   DE    G  + +   L         +L +AT
Sbjct: 145 VATPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAILEHAPAGRQTVLFSAT 204

Query: 430 PIPRTLVLTSLGDIDISKIT---EKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKK 484
              R   L      D  +I    E+P   +   ++     + R  +     +V+  E   
Sbjct: 205 MPARIDGLARQHLTDPVRIRIERERPVAGEAPRVRQSAYIVARAHKPAALGRVLDVESPT 264

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  +  +         R  V+R              +HG MS   ++ VM   + GT  L
Sbjct: 265 AAIVFCR--------SREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADL 316

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           L+AT V   G+DV   + ++  +      + +H++ GRVGR       I L  P
Sbjct: 317 LVATDVAARGLDVEQLTHVVNYDVPSAPESYVHRI-GRVGRAGREGVAITLAEP 369


>gi|90408198|ref|ZP_01216366.1| putative ATP-dependent RNA helicase DbpA [Psychromonas sp. CNPT3]
 gi|90310728|gb|EAS38845.1| putative ATP-dependent RNA helicase DbpA [Psychromonas sp. CNPT3]
          Length = 462

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 82/419 (19%), Positives = 154/419 (36%), Gaps = 52/419 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+++ ++  T+ Q  ++  IL           I QG  GSGKT    + +   +      
Sbjct: 19  LKSLEYTQMTEIQAQSLPHILAGKDV------IAQGKTGSGKTAAFALGLLQKLNVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++I+ P   LA Q    I++  +    I V  + G  P   +  +LE      AHII+
Sbjct: 73  IQSLILCPTRELADQVSSEIRRLARGIHNIKVLTLCGGAPFGPQIGSLEH----GAHIIV 128

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT    QD ++   L L  V     DE  R      +   +       ++  A    +TL
Sbjct: 129 GTPGRIQDHLRKQTLCLDEVSMLVLDEADRMLDMGFVDAIED------IIEQAPKSRQTL 182

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I +I+ +   R P+   +  ++  + + +   +V S  ++   +   I + 
Sbjct: 183 LFSATFPDQIQQIS-RNILRDPVSIKVEAMHDDNTISQYFYLVRSAEERMLALRLLILQY 241

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +  V+       +   S   +HG +   D++  +  F N +C +L+AT 
Sbjct: 242 QPTSAVVFCNTKREVQEVAEELNNRGFSALALHGDLDQKDRDQALIRFSNRSCSILVATD 301

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ + S +   N  H     +H++ GR GR          Y        +    
Sbjct: 302 VAARGLDIENLSAVFNYNLAHDQEIHVHRI-GRTGRAGSKGMAFSFYSAKDEHRIHLLED 360

Query: 610 VLKNTEDGFLI-------------AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSL 655
           +L        +             A   L+        G KQ   P  ++      D +
Sbjct: 361 LLDRNIQAQELPEASVLELQPQPSAMITLRIEG-----GKKQKIRPGDIVGALTGDDGI 414


>gi|162460883|ref|NP_001105372.1| eukaryotic initiation factor 4A [Zea mays]
 gi|2500522|sp|Q41741|IF4A_MAIZE RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|603190|gb|AAA82736.1| translation initiation factor eIF-4A [Zea mays]
          Length = 410

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 130/346 (37%), Gaps = 43/346 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 59  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 112

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 113 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS----GVHVVVGTPGRVFD 168

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L   
Sbjct: 169 MLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEAL--- 225

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKK- 496
                   +IT K    KP++ ++       E I++  V +  E  K   +C   E    
Sbjct: 226 --------EITRKFMN-KPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDLYETLAI 276

Query: 497 -----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++
Sbjct: 277 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 336

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             GIDV   S++I  +        LH++ GR GR       I    
Sbjct: 337 ARGIDVQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVT 381


>gi|256821642|ref|YP_003145605.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795181|gb|ACV25837.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 598

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/341 (20%), Positives = 131/341 (38%), Gaps = 35/341 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q ++I  ++           I Q   G+GKT    + M + ++A     Q +++A
Sbjct: 30  QPSPIQSASIPVLMAGKD------IIGQAQTGTGKTAAFALPMLSRLDAKDNNTQLLVLA 83

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  + Y +    + V  I G      + + L+R     A I++GT     
Sbjct: 84  PTRELAIQVAEACQSYAKNMPGLNVLPIYGGQKYDIQLRQLKR----GAQIVVGTPGRVM 139

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRT--L 435
           D I+           L+L   DE  R G    ++           + L +AT       +
Sbjct: 140 DHIRRGTLKLDNLKALVLDEADEMLRMGFIDDVEWVLGHTPKTRQIALFSATMPKEIKKV 199

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L + +  KI  K +    I      ++ I ++    +V+ +E      I  + +  
Sbjct: 200 AEKYLHEPEHIKIQTKTSTATTINQRYWLVSGIHKLDALTRVLETEEFDGMIIFVRTK-- 257

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                 +  E  + L          ++G ++   +E +++  K G   +LIAT V   G+
Sbjct: 258 -----IATTELADKLTARG-FRAEALNGDIAQTTRERIVEKLKKGQIDILIATDVAARGL 311

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           DV   S ++  +  +   + +H++ GR GR     + IL  
Sbjct: 312 DVERISHVVNYDIPYDTESYVHRI-GRTGRAGRSGNAILFV 351


>gi|206559326|ref|YP_002230087.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
           J2315]
 gi|198035364|emb|CAR51239.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
           J2315]
          Length = 477

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 124/357 (34%), Gaps = 29/357 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----------EAG 321
           SPT  Q+ AI  +L           +     G+GKT    + +   +          +  
Sbjct: 23  SPTPIQQQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHTFYAEHRGAKRA 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R       I++ 
Sbjct: 77  VRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKR----GVDIVVA 132

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +Q   + L  +D         R+           +L    P  + L+ ++  
Sbjct: 133 TPGRLLDHMQQKTIDLSDLD-ILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATF 191

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-- 499
             +I  + +      P    +   N   E + +    +   +K   +   I E       
Sbjct: 192 SDEIKALADSLLD-SPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVL 250

Query: 500 ----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +    R          S   IHG  S   +   +  FKN T ++L+AT +   GI
Sbjct: 251 VFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGI 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           D+     ++  +  +     +H++ GR GR       + L      +       ++K
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLVCVDEKQLLRDIERLIK 366


>gi|319763758|ref|YP_004127695.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|330823978|ref|YP_004387281.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|317118319|gb|ADV00808.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|329309350|gb|AEB83765.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           K601]
          Length = 480

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 124/363 (34%), Gaps = 42/363 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-----------G 322
           T  Q  AI  +L           +     G+GKT    + +   +               
Sbjct: 27  TPIQAQAIPVVLTGKDV------MGAAQTGTGKTAAFSLPLLQRLLKHENSSASPARHPV 80

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++ P   LA Q  + I  Y + T++   ++ G M    +   L++       +++ T
Sbjct: 81  RALVLLPTRELADQVAQQIAMYAKYTKLRSTVVFGGMDMKPQTAELKK----GVEVLVAT 136

Query: 383 HALFQDSIQYYKLILVIV-----DEQHRFG-----VQQRLKLTQKATAPHVLLMTAT--P 430
                D I+    +L  V     DE  R          +  L+        LL +AT  P
Sbjct: 137 PGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSATFSP 196

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + L  + L D    ++         ++     +   D+      V+   G K  +I  
Sbjct: 197 EIKRLAGSYLQDPVTIEVARPNETASTVEQRFFSVQDDDKRRAIRHVLTERGLKQAFIFV 256

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   N +    R     E      A +HG  S  ++   +++FK+G   LL+ T V
Sbjct: 257 --------NSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAFKSGDVDLLVCTDV 308

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D   +   +        +H++ GR GR       + L     ++       +
Sbjct: 309 AARGLDIKDVPAVFNHDVPFNAEDYVHRI-GRTGRAGASGLAVTLVGSGDARLVADIEKL 367

Query: 611 LKN 613
           +K 
Sbjct: 368 IKK 370


>gi|154315049|ref|XP_001556848.1| hypothetical protein BC1G_04866 [Botryotinia fuckeliana B05.10]
 gi|160419161|sp|A6RW79|PRP5_BOTFB RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|150848404|gb|EDN23597.1| hypothetical protein BC1G_04866 [Botryotinia fuckeliana B05.10]
          Length = 1151

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 78/433 (18%), Positives = 155/433 (35%), Gaps = 51/433 (11%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ++  + +  PT  Q  AI  I+           I     GSGKT+  L+ M   +     
Sbjct: 568 VITKLGYERPTSIQMQAIPAIMSGRDV------IGVAKTGSGKTIAFLLPMFRHIRDQRP 621

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +IM P   LA Q ++  K + +   +      G      +   L+R     
Sbjct: 622 LKGSDGPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLKR----G 677

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     + +           ++  V++DE  R           K          
Sbjct: 678 AEIIVCTPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIR---- 733

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++     +  + +K   + P++ V+   + +   I ++  V  E +K + 
Sbjct: 734 --PNRQTILFSATMPRIMDALAKKTL-QSPVEIVVGGRSVVAPEITQIVEVREEKEKFHR 790

Query: 488 ICPQIEEKKESNFR-------SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
           +   + E   ++            E+ + L +           IHG    +D++S +D F
Sbjct: 791 LLELLGELYNTDEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQVDRDSTIDDF 850

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   ++IAT+V   G+DV    +++  +A +     +H+  GR GR     + +    
Sbjct: 851 KAGVVPIMIATSVAARGLDVKQLKLVVNFDAPNHLEDYVHR-AGRTGRAGNTGTAVTFIT 909

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG--EILGIKQSGMPKFLIAQPELHDSL 655
               + S      L+    G  + +   + RK    ++    +     F     E  D+ 
Sbjct: 910 EEQEQYSVGIAKALEQ--SGQEVPDRLNEMRKSYKDKVKSGAKKESSGFRGKGLERFDA- 966

Query: 656 LEIARKDAKHILT 668
            E     A+ ++ 
Sbjct: 967 -EREATKARELVQ 978


>gi|148652953|ref|YP_001280046.1| DEAD/DEAH box helicase domain-containing protein [Psychrobacter sp.
           PRwf-1]
 gi|148572037|gb|ABQ94096.1| DEAD/DEAH box helicase domain protein [Psychrobacter sp. PRwf-1]
          Length = 516

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 127/358 (35%), Gaps = 34/358 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVI 326
           PT  Q  +I   L           +L    GSGKT   ++ M   +            VI
Sbjct: 63  PTPIQALSIPPALAGRD------LLLSAQTGSGKTAAFVLPMLDKIIRDKATNKVVHTVI 116

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           + P   LA Q  + +++Y+  T+ I  + + G  P   + +AL +       +II T   
Sbjct: 117 LTPTRELANQVSDSVRQYSSKTRNIFSVPLVGGAPYGGQIRALNK----GVQVIIATPGR 172

Query: 386 FQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLTS 439
           F D      I   +L ++I+DE  R       +  +K       +M A P   +T++ ++
Sbjct: 173 FIDHMNSGRIDLSELDILILDEADRMLDMGFAEDIEK-------VMKAAPKNRQTIMCSA 225

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
             D  + KI            +      IDE +        + +    +  Q +  +   
Sbjct: 226 TWDGPVGKIAASFTNNPERIDIKAETKHIDESVYYADDFNHKNRILDNLLTQKDVNQAII 285

Query: 500 F---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F   +   E      +      + +HG +    +  +++  K G   +L+AT V   GID
Sbjct: 286 FAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRSRIINDVKAGKITILVATDVAARGID 345

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           V   + +   +        +H++ GR GR       I +               LK T
Sbjct: 346 VSGITHVFNYDLPRQTEDYVHRI-GRSGRAGRTGIAINICSIDDRAQLDAINRYLKRT 402


>gi|1170508|sp|P41381|IF4A8_TOBAC RecName: Full=Eukaryotic initiation factor 4A-8; Short=eIF-4A-8;
           AltName: Full=ATP-dependent RNA helicase eIF4A-8
 gi|475219|emb|CAA55639.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
 gi|475221|emb|CAA55640.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
          Length = 413

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 127/343 (37%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+I+GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAA----GVHVIVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   T   V + +AT  P  L +T
Sbjct: 172 MLRRQSLRPDYLRMFVLDEADEMLSRGFKDQIYDIFQMLPTKVQVGVFSATMPPEALDIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ +  +E L          Y      +   
Sbjct: 232 RKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTTD 386


>gi|84385240|ref|ZP_00988272.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus 12B01]
 gi|84379837|gb|EAP96688.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus 12B01]
          Length = 459

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 157/445 (35%), Gaps = 62/445 (13%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ ++  T  Q  ++  IL           I QG  GSGKT    + +   +      
Sbjct: 19  LDSLGYTEMTPIQALSLPTILDGKDV------IGQGKTGSGKTAAFGLGVLQNLRVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 73  VQSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 128

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATP 430
           GT     D ++  +        L+L   D     G Q      +         LL +AT 
Sbjct: 129 GTPGRILDHLERERIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQTLLFSATF 188

Query: 431 IPRT--LVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
             +   +    + + ++ K+  T   +  +     +      D+ +E + ++  + + A 
Sbjct: 189 PKQIKSVADRIMNNPEMVKVESTHDHSSIQQHFYKVEGTEARDDALELM-LLHHQPESAV 247

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C   +E +  N       F         S+  +HG M   +++  +  F N T  +L+
Sbjct: 248 VFCNTKKEVQNVNDELSHRGF---------SVIELHGDMEQRERDQALVQFSNKTISILV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV +   +            +H++ GR GR       I  +          
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRI-GRTGRAGSKGVAISFFSEKEMHRVAQ 357

Query: 607 RLSVL---------------KNTEDGFLIAEED---LKQRKEGEILG--IKQSGMPKFLI 646
               +               K      +  + D     + + G+ILG    Q G+    +
Sbjct: 358 IDEYMDMPIEPSQLPAKPIAKPYYSNMVTIQIDGGKKAKLRAGDILGALTGQGGIDGKSV 417

Query: 647 AQPELHD--SLLEIARKDAKHILTQ 669
            +  L    + + + R  AK  L +
Sbjct: 418 GKINLFAMRAYVAVERSMAKKALGK 442


>gi|83942539|ref|ZP_00955000.1| DEAD/DEAH box helicase [Sulfitobacter sp. EE-36]
 gi|83846632|gb|EAP84508.1| DEAD/DEAH box helicase [Sulfitobacter sp. EE-36]
          Length = 433

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 129/363 (35%), Gaps = 43/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q+ AI      M+ ++ M        G+GKT    I + A +            +
Sbjct: 24  DPTPIQKQAIP---HGMNGRDVM---GLAQTGTGKTAAFGIPLVAQMLEREARPEPRTVR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  E +K + + TQ+   +I G      + K +ER       +++ T 
Sbjct: 78  GLVLAPTRELANQIMENLKGFCEGTQLKTMMIVGGQSINPQIKRMER----GVDLLVATP 133

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +            L+L   D+    G    L+                   +T+
Sbjct: 134 GRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIAAVLPKE---------RQTM 184

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     +++I        PI+  + P  +  + I +    +++ +K   +   + + 
Sbjct: 185 LFSATMPKLMNEIANSYLN-SPIRIEVSPPGKAADKITQEVHFIAKAEKKSLLIELLGKH 243

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            E         +   E+            A IHG  S   ++  ++SFK G   +L+AT 
Sbjct: 244 TEERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESFKKGEVTVLVATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D   +      +     +H++ GR  R  +  + I    P           
Sbjct: 304 VAARGLDIPDVKHVYNYELPNVPDNYVHRI-GRTARAGKDGAAIAFCAPDEMGELKDIQK 362

Query: 610 VLK 612
            +K
Sbjct: 363 TMK 365


>gi|221199585|ref|ZP_03572629.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
 gi|221205515|ref|ZP_03578530.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221174353|gb|EEE06785.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221180870|gb|EEE13273.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
          Length = 487

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 126/364 (34%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAQAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    +    +  ++  +   D+    ++++   G K   +
Sbjct: 203 SPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      + IHG  S +++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGATGDALSLCSPNERKQLADIE 373

Query: 609 SVLK 612
            ++K
Sbjct: 374 KLIK 377


>gi|62638007|gb|AAX92639.1| Vasa protein [Monopterus albus]
          Length = 450

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 128/375 (34%), Gaps = 55/375 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------------ 319
            PT  Q+  I  I            +     GSGKT   L+ +   +             
Sbjct: 46  KPTPVQKHGIPIISAGRD------LMACAQTGSGKTASFLLPILQQLMVDGVAASCFSEL 99

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K+   T +   ++ G +   ++ + + +  +    ++
Sbjct: 100 QEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGYQIREILKGCN----VL 155

Query: 380 IGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKL------TQKATAPHVLL 425
            GT     D I        +   L+L   D     G +  ++                L+
Sbjct: 156 CGTPGRLLDMIGRAKVGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPPKENHQTLM 215

Query: 426 MTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVL 479
            +AT    I R        D     +         ++   + +   ++ D+++E LK   
Sbjct: 216 FSATFPEDIQRMAADFLKTDYLFLAVGVVGGACTDVEQTFVQVTKFSKRDQLLEFLKTTG 275

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +E    +              +   +               IHG     ++E  +  F++
Sbjct: 276 TERTMVFV-----------ETKRQADFIALFLCQEKVPTTSIHGDREQPEREKALADFRS 324

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G C +L+AT+V   G+D+ D   ++  +  +     +H++ GR GR   I   +  + P 
Sbjct: 325 GKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRI-GRTGRCGNIGRAVSFFDPN 383

Query: 600 LSKN-SYTRLSVLKN 613
                + + + +L  
Sbjct: 384 ADGQLARSLVMILSK 398


>gi|46581710|ref|YP_012518.1| DEAD-box ATP dependent DNA helicase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46451133|gb|AAS97778.1| ATP-dependent RNA helicase, DEAD/DEAH family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235346|gb|ADP88200.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
          Length = 532

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 128/353 (36%), Gaps = 48/353 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           +  + F  P+  Q  AI  +L+          I Q   G+GKT    + +   ++A    
Sbjct: 20  IEELGFTEPSPIQSIAIPRLLEGRDV------IGQAQTGTGKTAAFGLPLLQRIDAADRS 73

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +    ++   + +  + G  P   +  AL R     A +++
Sbjct: 74  VQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALRR----GAQVVV 129

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D I    L L +V        DE    G ++ +   L++          +AT 
Sbjct: 130 GTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQSAFFSATM 189

Query: 431 IPRTLVLT--SLGDIDISKITEK---PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
               L L    L + ++ ++T +    A  +     + P  R+D V       +      
Sbjct: 190 PDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFDAYIPRKAIV 249

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTC 542
           +              R+  +  + L             +HG ++   +E VM  F+ G  
Sbjct: 250 F--------------RATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGI 295

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            +L+AT V   G+DV D   +I  +  +     +H++ GR GR          
Sbjct: 296 SVLVATDVAARGLDVDDVDTVINFDLPNDPETYVHRI-GRTGRAGRTGRAFSF 347


>gi|253575601|ref|ZP_04852937.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251844939|gb|EES72951.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 472

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 130/349 (37%), Gaps = 22/349 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q   I   L+          + Q   G+GKTL  L+ +   +  G    Q +I+A
Sbjct: 26  EPSPVQAECIPAALEGRD------ILAQSQTGTGKTLAYLLPLLQRINPGEKTLQGLILA 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q     +KY +   I  + + G      + + L+        +++GT    ++
Sbjct: 80  PTQELAMQILREAEKYGEPLGIRSQALIGGAAIKRQLEKLKL----HPQLVVGTPGRIRE 135

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +   KL L  +       V Q  +L   A   H+L  T     + + L++  + DI  +
Sbjct: 136 ILALRKLKLHTLLTVVVDEVDQMFQLGGTADVEHILRGT-LRDRQLMFLSATINPDIRAL 194

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRS 502
             K   ++P++  I P  R  + +E L  V     K   +   +   +        N   
Sbjct: 195 AAKEM-KEPLEIGIEPEQRTSKTVEHLYFVSEARDKIDMLRRIVRHFEPERTIVFINNTD 253

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
            +    +   +   S   ++G      +   +  F+ G  ++L+A+ V   G+D+ + ++
Sbjct: 254 QIAEVEAKMNYVGLSAGALYGDADKTARSLTLQRFREGKIRVLVASDVAARGLDIENLAL 313

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           ++  +        +H++ GR GR       + +  P            L
Sbjct: 314 VVNLDPPIDSEHYVHRV-GRTGRMGRKGLAVSIVTPQEEFIMRKFAREL 361


>gi|254443756|ref|ZP_05057232.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
 gi|198258064|gb|EDY82372.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
          Length = 603

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 92/430 (21%), Positives = 151/430 (35%), Gaps = 47/430 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  Q  L  I +  P+  Q  AI  +L           I Q   G+GKT    + + + 
Sbjct: 20  SQPVQDALVEIGYETPSPIQARAIPVVLSGRD------LIGQAQTGTGKTAAFALPLLSM 73

Query: 318 V---EAGGQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAH 373
           +   E G +A+I+AP   LA Q  E I  Y  +  ++ V  I G      + +AL+R   
Sbjct: 74  LDPNEDGPKAIILAPTRELALQVSEAISNYGRKVKRLEVTAIYGGTDFTRQFRALDR--- 130

Query: 374 GQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATA--PHV 423
            +  I++GT     D I+   L        +L   DE  R G  + ++   + T      
Sbjct: 131 -KPAIVVGTPGRIMDHIRRGSLDLSRISHVVLDEADEMLRMGFIEDVEWILEHTPSERQT 189

Query: 424 LLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            L +AT  PR   +    L +     I    A    ++   I  N +   IE L  +L  
Sbjct: 190 ALFSATMPPRIAAIAKKQLKEPVTVAIKNTTATVSTVRQRFIKCNGMRHKIEVLGNLLET 249

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            ++   I     +   S           L     + +  IHG ++   +E  +   K G 
Sbjct: 250 EERDAAIVFTRTKSAASMI------AEELAASGHA-VEAIHGDITQNKREKAVSLLKEGK 302

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   G+DV   S +   +        +H++ GR GR       ILL      
Sbjct: 303 IDILVATDVAARGLDVDRISHVFNFDIPDDAEPYIHRI-GRAGRAGRSGEAILLLTRRDF 361

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDL--KQRKE------GEILGI----KQSGMPKFLIAQP 649
           +         +            L  + R+       GEI+      ++       +A  
Sbjct: 362 RKLRDIEDATRQQMQPMPPPSRALIAEIRQAKLEKKIGEIITEGRINRERTAVTDALANL 421

Query: 650 ELHDSLLEIA 659
           E     L  A
Sbjct: 422 ETDAETLAAA 431


>gi|86132795|ref|ZP_01051387.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 425

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 128/348 (36%), Gaps = 46/348 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q+ AI  +L+          +     G+GKT    + M   + A  +       A
Sbjct: 23  TPSPIQQKAIPKVLEGKDV------LASAQTGTGKTAGFTLPMLHNLIANPRQGRRKVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q Y+ +++Y++   I   +I G + Q  + + + +       I++ T  
Sbjct: 77  LVLTPTRELAAQIYDNVREYSKYVDIKSTVIFGGVNQNPQVRTIRQ----GVDILVATPG 132

Query: 385 LFQD----------SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
              D           I++  L+L   D     G    +           +L       + 
Sbjct: 133 RLLDLENQGLLSLSDIEF--LVLDEADRMLDMGFIHDI---------KKVLRLVPAKRQN 181

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++  + DI K+        P+     P N   E +++    + + +K   +   I E
Sbjct: 182 LLFSATFNKDIKKLASS-ILTNPVLVEATPENTTAEKVDQKTYRVDKSRKTEMLIKFINE 240

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +    R +   +    + A IHG  +   +   +  FK+G  ++L+AT
Sbjct: 241 GNWDQVLVFTRTKHGANRLSQKLDKAGITSAAIHGNKTQNARVKALAGFKSGKIRVLVAT 300

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            +   G+D+     +I     +     +H++ GR GR       I L 
Sbjct: 301 DIAARGLDIPLLPYVINYELPNVPEDYVHRI-GRTGRAGASGQAISLV 347


>gi|71029108|ref|XP_764197.1| RNA helicase [Theileria parva strain Muguga]
 gi|68351151|gb|EAN31914.1| RNA helicase, putative [Theileria parva]
          Length = 635

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/365 (20%), Positives = 133/365 (36%), Gaps = 38/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  +    L        M+ I   + GSGKTL  L+     + A        G  
Sbjct: 232 EPTPIQVQSWPIAL----SGRDMIGI--AETGSGKTLAFLLPAIVHINAQALLRPGDGPI 285

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA+Q  E    + +++++   +  G +P+  +  AL R       I+I   
Sbjct: 286 VLVLAPTRELAEQIKETALVFGRSSKLKTSVAYGGVPKRFQTIALRR----GVEILIACP 341

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D ++           L+L   D     G + +++    Q       L+ +AT    
Sbjct: 342 GRLIDFLESSVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLMFSATWPKE 401

Query: 434 TLVLT---SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
            + L+      ++    I              + I    E   +LK +L +      I  
Sbjct: 402 VIALSRSLLSHEVVHVNIGSLDLTTCHNIEQNVFILEEREKRVKLKELLKKLMDGGKILI 461

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             E KK ++  +   R +            IHG     ++  V++ FK+G   ++IAT V
Sbjct: 462 FSETKKGADTLTRELRLDGW------PALCIHGDKKQEERTWVLNEFKSGKHPIMIATDV 515

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D   +I  +        +H++ GR GR     S      P   K++   + +
Sbjct: 516 ASRGLDVRDVKYVINYDFPGQIEDYVHRI-GRTGRAGMKGSSYTFLTPDKFKSARELVKL 574

Query: 611 LKNTE 615
           ++   
Sbjct: 575 MREAN 579


>gi|321399813|emb|CAJ08508.2| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 615

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 136/375 (36%), Gaps = 50/375 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+  I  +L           +     GSGKT   LI     +             
Sbjct: 157 KPTPVQKYGIPCVLNG------SDLMACAQTGSGKTAAYLIPAINFMLVNNLNRAKPTNS 210

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           +A   A++++P   L+ Q YE  +K+T  T     ++ G     H+   L R       +
Sbjct: 211 QAAPSALVLSPTRELSIQIYEEGRKFTYRTGFRCVVVYGGADPRHQIHELTR----GCGL 266

Query: 379 IIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLK--------LTQKATAPH 422
           ++ T     D              L+L   D     G + +++                 
Sbjct: 267 LVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPDSDMPPPGERQ 326

Query: 423 VLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            LL +AT     + +    L      ++    +  + I   +  +  +D+      + + 
Sbjct: 327 TLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVEDMDK--RGCLLEVL 384

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +  +   +   +E+K+++++                  + IHG     ++E  +D FK+G
Sbjct: 385 KEHQGERVLVFVEKKRDADY------LERYLRQSRIPCSSIHGDRVQREREEALDIFKSG 438

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
            C++L+AT V   G+D+ + ++++  +        +H++ GR GR  +  + I  ++   
Sbjct: 439 VCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRI-GRTGRAGKRGTAISFFNDKN 497

Query: 601 SKNSYTRLSVLKNTE 615
                  + +L+ T 
Sbjct: 498 RNIVDDLIPLLRETN 512


>gi|319775896|ref|YP_004138384.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|317450487|emb|CBY86704.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
          Length = 613

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 84/437 (19%), Positives = 159/437 (36%), Gaps = 49/437 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+S I  +L           +     GSGKT    + + A +   E   
Sbjct: 21  SDLGFETPSPIQQSCIPHLLSG------NDVLGMAQTGSGKTAAFALPLLAQIDPSEKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  + + +      +  + G      R     R     A +++G
Sbjct: 75  QMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGG----QRYDIQLRALKQGAQVVVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 131 TPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMP 190

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I      ++ + +    L+ +  E   A  I 
Sbjct: 191 EPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +N +  +++AT 
Sbjct: 251 ARTKTGTLD--------ITELLEKNGFRSAALNGDMTQQLREQTLDRLRNRSLDIVVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S+++  +      + +H++ GR GR       +L   P   +       
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEH 361

Query: 610 VLKNTEDGFLIAEEDL--KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           ++K   +   +   ++  + R++  +  I +         Q E HD  LE  R   + + 
Sbjct: 362 LMKKGINEVELPNHEVLQECRRKKFVAKITK---------QLEHHD--LEQYRSLLEDLF 410

Query: 668 TQDPDLTSVRGQSIRIL 684
           T D D  ++    + +L
Sbjct: 411 TADQDQENIAAAMLMLL 427


>gi|309389357|gb|ADO77237.1| DEAD/DEAH box helicase domain protein [Halanaerobium praevalens DSM
           2228]
          Length = 529

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 147/429 (34%), Gaps = 43/429 (10%)

Query: 267 RNIPFSPT-KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GG 322
             + F  T   Q +AI  +L           + Q   G+GKT    I +   +++     
Sbjct: 20  EEMGFEETTPIQTNAIPAVLNGQD------IVGQAQTGTGKTAAFGIPLLEEMDSENKNP 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+I+ P   LA Q  E +K+  +  + I  + + G      + KAL++       I+IG
Sbjct: 74  QAIILCPTRELAIQVSEELKRLAKYKRRIYTLPVYGGQSIGRQIKALKK----GVQIVIG 129

Query: 382 THALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D I+   L L  +     DE         +   +       +L       +TL 
Sbjct: 130 TPGRVMDHIRRKTLKLDNINYFVLDEADVMLDMGFIDDIE------TVLRDIPDDRQTLF 183

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     I ++++K          +   N     I++    +    K   +   ++   
Sbjct: 184 FSATIPKSIKRLSKKYQKNSKFL-RVAHENLTVPSIDQYYYEIRRNDKLKALTRIMDLSN 242

Query: 497 E------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   N R +V+  N   +        IHG ++   ++ VM  F++G  ++L+AT V
Sbjct: 243 PELAIVFCNTRKMVDELNIKLQARGYLSDAIHGGLNQNQRDRVMKKFRSGIIEVLVATDV 302

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GIDV D   +   +        +H++ GR GR  +                      
Sbjct: 303 AARGIDVDDVEAVFNYDLPQDTDYYVHRI-GRTGRAGKSGEAHNFVVGKDIYKLRDIQKY 361

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEI-------ARKDA 663
            K+      I  +D  Q    +     Q        A    +  L+E        A + A
Sbjct: 362 TKSKIKRAQIPSQDDIQ--AAKFEQFSQELSAYMDSADLGKYIDLIEELIDEQYSAIEIA 419

Query: 664 KHILTQDPD 672
             ++ +  D
Sbjct: 420 AALMKKSVD 428


>gi|294877852|ref|XP_002768159.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
 gi|239870356|gb|EER00877.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
          Length = 395

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 130/370 (35%), Gaps = 37/370 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           P+  Q+ AI  I++          ++Q   G+GKT V  +     V   E   Q +I++P
Sbjct: 45  PSAVQQRAILPIVKGRDV------VVQSQSGTGKTCVFALGALQTVKTTERDPQVLILSP 98

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  +          + V    G        +ALE       HI+ GT       
Sbjct: 99  TRELAEQSQKVCLALGDYMNVQVHCCVGGKKLTDDIRALEA----GVHIVSGTPGRVYHM 154

Query: 390 I--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           I            L+L   DE    G ++++    +            P  + +++++  
Sbjct: 155 ISQRHLSTRHLKMLVLDEADEMLDRGFKEQVYDIYRYLP---------PSTQCVLVSATM 205

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
             +I ++T           V      ++ + +    V  E  K   +C   +        
Sbjct: 206 PNEILEMTNNFMNNPFRVLVKRDELTLEGIKQFFVAVEKEQWKFDTLCDLYDTLTITQAV 265

Query: 497 -ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +  V+   +       ++  +HG M   +++++M  F++G  ++LI T +   G+
Sbjct: 266 IFCNTKQKVDWLTNKMREAKFTVVSMHGDMPQKERDAIMQKFRSGQARVLITTDIWGRGL 325

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S++I  +  +     +H++ GR GR       I        +             
Sbjct: 326 DVQQVSLVICYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKEDDVRILRDIEQYYSTQI 384

Query: 616 DGFLIAEEDL 625
           D   +   DL
Sbjct: 385 DEMPMNVADL 394


>gi|167567410|ref|ZP_02360326.1| ATP-dependent RNA helicase DbpA [Burkholderia oklahomensis EO147]
          Length = 465

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 154/434 (35%), Gaps = 58/434 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  Q +++   L           I Q   GSGKT    + + A ++A     QA+++ P 
Sbjct: 32  TPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLPLLARLDARRFDVQAMVLCPT 85

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + I++  +    + V  + G  P   +  +LE      AHI++GT     D 
Sbjct: 86  RELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEH----GAHIVVGTPGRIMDH 141

Query: 390 IQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           ++   L L      ++DE  R                           +TL+ ++     
Sbjct: 142 LERGSLALGALNTLVLDEADRMLDMGFFDDIATVARQ------CPKERQTLLFSATYPDG 195

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------S 498
           I+K++++       K V +     D  I +    ++E ++ + +   +   +        
Sbjct: 196 IAKLSQQFLRNP--KEVKLEERHEDSKIRQRFYEVTEDERLHAVGMLLNHYRPVSTLAFC 253

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           N +        +          +HG +   +++ V+  F N +C +L+AT V   G+D+ 
Sbjct: 254 NTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIA 313

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
               +I  +        +H++ GR GR ++    + L          +     K   +  
Sbjct: 314 QLEAVINVDVTPDPEVHVHRI-GRTGRADQDGWALSLASMNEMGRVGSIEQAQKRDVEWH 372

Query: 619 LIA-------------EEDLKQRK-------EGEILG--IKQSGMPKFLIAQP--ELHDS 654
            +A              E L+           G++LG    ++G     I +       +
Sbjct: 373 PLAELEAESDAPLLPPMETLQILGGRKEKIRPGDVLGALTGEAGFSGAQIGKINVTEFST 432

Query: 655 LLEIARKDAKHILT 668
            + + R  A+  L+
Sbjct: 433 YVAVERSIARDALS 446


>gi|161784285|sp|Q5BCU6|PRP28_EMENI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|259486970|tpe|CBF85264.1| TPA: Pre-mRNA-splicing ATP-dependent RNA helicase prp28 (EC
           3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5BCU6]
           [Aspergillus nidulans FGSC A4]
          Length = 782

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 140/387 (36%), Gaps = 55/387 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q +AI   +Q          I     GSGKT   L+ +   +             
Sbjct: 368 EPTPIQRAAIPIAMQSRD------LIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRK 421

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G  A+++AP   LAQQ     KK+T+     V  I G      +  +L       A I
Sbjct: 422 NDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRN----GAEI 477

Query: 379 IIGTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLT--------------- 415
           II T     D I+   L+L           D     G ++ +                  
Sbjct: 478 IIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEE 537

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            + ++A    L +     +T++ T+     + +I  K   R  I T+      +D V +R
Sbjct: 538 AEDSSAMSRHLGSKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQR 597

Query: 475 LKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           ++++  E K+   +   +             N +   +      + +  S   +HG  + 
Sbjct: 598 VEMIAGEDKRKKRLGEILSSGDFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQ 657

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +E+ + S +NG+  +L+AT +   GIDV D S++I  N      +  H++ GR GR  
Sbjct: 658 EQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRI-GRTGRAG 716

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNT 614
           +    I       +   Y    +L  +
Sbjct: 717 KSGVAITFLGNEDADVMYDLKQMLIKS 743


>gi|322385798|ref|ZP_08059442.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC
           51100]
 gi|321270536|gb|EFX53452.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC
           51100]
          Length = 524

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/340 (20%), Positives = 126/340 (37%), Gaps = 32/340 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          ++      QA+I+AP 
Sbjct: 25  SPIQEQTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLNHIETLILDEADEMLNMGFLEDIES-------IISRVPEERQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            K       ++P    I       E++++  + + E +K   +   ++ ++         
Sbjct: 188 IKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGR 247

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            + +   +      + +H++ GR GR  +    I    P 
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPN 346


>gi|294936207|ref|XP_002781657.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
 gi|239892579|gb|EER13452.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
          Length = 395

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 130/370 (35%), Gaps = 37/370 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           P+  Q+ AI  I++          ++Q   G+GKT V  +     V   E   Q +I++P
Sbjct: 45  PSAVQQRAILPIVKGRDV------VVQSQSGTGKTCVFALGALQTVKPTERDPQVLILSP 98

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  +          + V    G        +ALE       HI+ GT       
Sbjct: 99  TRELAEQSQKVCLALGDYMNVQVHCCVGGKKLTDDIRALEA----GVHIVSGTPGRVYHM 154

Query: 390 I--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           I            L+L   DE    G ++++    +            P  + +++++  
Sbjct: 155 ISQRHLSTRHLKMLVLDEADEMLDRGFKEQVYDIYRYLP---------PSTQCVLVSATM 205

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
             +I ++T           V      ++ + +    V  E  K   +C   +        
Sbjct: 206 PNEILEMTNNFMNNPFRVLVKRDELTLEGIKQFFVAVEKEQWKFDTLCDLYDTLTITQAV 265

Query: 497 -ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +  V+   +       ++  +HG M   +++++M  F++G  ++LI T +   G+
Sbjct: 266 IFCNTKQKVDWLTNKMREAKFTVVSMHGDMPQKERDAIMQKFRSGQARVLITTDIWGRGL 325

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S++I  +  +     +H++ GR GR       I        +             
Sbjct: 326 DVQQVSLVICYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKEDDVRILRDIEQYYSTQI 384

Query: 616 DGFLIAEEDL 625
           D   +   DL
Sbjct: 385 DEMPMNVADL 394


>gi|152013501|sp|A4RHF1|DED1_MAGO7 RecName: Full=ATP-dependent RNA helicase DED1
          Length = 671

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/380 (17%), Positives = 137/380 (36%), Gaps = 57/380 (15%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGG--------- 322
           PT  Q+ ++  +   M  ++ M        GSGKT   L  +   A + G          
Sbjct: 210 PTPVQKYSVPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQAFKTGPSPIPATNQG 263

Query: 323 ------------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                        ++I+AP   L  Q Y+  +K+   + +   ++ G      + + +ER
Sbjct: 264 PGGYGRQRKAYPTSLILAPTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQIER 323

Query: 371 IAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP- 421
                  +++ T     D I+  +        L+L   D     G + +++   +     
Sbjct: 324 ----GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMP 379

Query: 422 -----HVLLMTATP--IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                  L+ +AT     + L    L D     +    +  + I   ++ +   D+ I  
Sbjct: 380 NVQDRQTLMFSATFPGYIQQLARDFLKDYIFLSVGRVGSTSENITQRVMEVKHRDDKISH 439

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  +LS       +   +E       +   +  +   ++       IHG  +  ++E  +
Sbjct: 440 LLDLLSTHGGGLTLI-FVET------KRNADELSDFLQNQNLPATSIHGDRTQRERERAL 492

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F+ G C +L+AT V   G+D+ + + +I  +        +H++ GR GR         
Sbjct: 493 EMFRTGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGIATA 551

Query: 595 LYH-PPLSKNSYTRLSVLKN 613
            +     S  +   L++LK 
Sbjct: 552 FFDMKDNSGVAQELLNILKE 571


>gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
 gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
          Length = 511

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 126/364 (34%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 55  TPTPIQAQAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 108

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 109 PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 164

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 165 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 224

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    +    +  ++  +   D+    ++++   G K   +
Sbjct: 225 SPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRERGLKQVIV 284

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      + IHG  S +++   +D+FK G  + L+AT
Sbjct: 285 F--------CNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEVEALVAT 336

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 337 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGATGDALSLCSPNERKQLADIE 395

Query: 609 SVLK 612
            ++K
Sbjct: 396 KLIK 399


>gi|84996983|ref|XP_953213.1| DEAD-box family RNA-dependent helicase [Theileria annulata strain
           Ankara]
 gi|65304209|emb|CAI76588.1| DEAD-box family RNA-dependent helicase, putative [Theileria
           annulata]
          Length = 616

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 136/378 (35%), Gaps = 39/378 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQ-GDVGSGKTLVALIAMAAAVEA--------GG 322
            PT  Q  A    L        M+ I + G   SGKTL  L+     + A        G 
Sbjct: 210 EPTPIQVQAWPIAL----SGRDMIGIAETGITRSGKTLAFLLPAIVHINAQALLRPGDGP 265

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++AP   LA+Q  E    + +++++   +  G +P+  +  AL R       I+I  
Sbjct: 266 IVLVLAPTRELAEQIKETALVFGRSSKLKTSVAYGGVPKKFQTIALRR----GVEILIAC 321

Query: 383 HALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP 432
                D ++           L+L   D     G + +++    Q       L+ +AT   
Sbjct: 322 PGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLMFSATWPK 381

Query: 433 RTLVLT---SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
             + L+      ++    I              + I    E   +LK +L +      I 
Sbjct: 382 EVISLSRSLLSHEVVHVNIGSLDLTTCHNIEQNVFILEEREKRLKLKELLKKLMDGGKIL 441

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
              E KK ++  +   R +            IHG     ++  V++ FK G   ++IAT 
Sbjct: 442 IFSETKKGADTLTRELRLDGW------PALCIHGDKKQEERTWVLNEFKTGKHPIMIATD 495

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV D   +I  +        +H++ GR GR     S      P   K++   + 
Sbjct: 496 VASRGLDVRDVKYVINYDFPGQIEDYVHRI-GRTGRAGMKGSSYTFLTPDKFKSARELVK 554

Query: 610 VLKNTEDGFLIAEEDLKQ 627
           +++       I  E LK 
Sbjct: 555 LMREANQ--EIPPELLKL 570


>gi|312880591|ref|ZP_07740391.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM
           12260]
 gi|310783882|gb|EFQ24280.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM
           12260]
          Length = 561

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 83/416 (19%), Positives = 156/416 (37%), Gaps = 49/416 (11%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIG 331
             Q      IL+D         I+Q   GSGKTL   + +   +E G    Q ++++P  
Sbjct: 29  PVQVR----ILED-DTLLDGDLIVQARTGSGKTLAFALPLLQRMERGERTPQVLVLSPTR 83

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
            LAQQ     +       I    + G M    + ++L       A +++GT     D ++
Sbjct: 84  ELAQQTAREFQWVGGEMGIRPASLVGGMDMDRQIRSLRD----GAAVVVGTPGRVLDHLR 139

Query: 392 YYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT-PIPRTLVLTSLGD 442
              L        IL   D     G +  L+           +M+A   + RT + ++   
Sbjct: 140 RGTLRPEGIQSLILDEGDHMLDLGFRDELE----------SIMSALGTVERTWLFSATMP 189

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----- 497
            D+  +  K        +++    R +++ +R  V+ S  +        + E  +     
Sbjct: 190 EDVVTLARKYLNAPRKISLVTDAARHEDIAQRAYVIPSRRRFEGLANVLLCEHPKRALLF 249

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              R   +               +HG M+  ++ + ++SF+ G   LL+AT V   G+D+
Sbjct: 250 CATRMETQELAERLGDEGFRAMALHGDMTQRERNNALESFRRGRVDLLVATDVAARGLDI 309

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              S +I           +H+  GR GR       ++L     ++ +    S++ +T   
Sbjct: 310 DGLSHVIQYGLPGCLETFIHR-SGRTGRAGHEGRNVILLT---AREARQFKSLVSHT--- 362

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIA-----RKDAKHILT 668
             +  E L      E+ GI ++   K L+  PE  ++  E A     R+D + +L 
Sbjct: 363 -ALDIEWLPAPDASEVEGISRAEFEKTLLESPEDEEAYREWAQQLLQREDTEELLA 417


>gi|323127665|gb|ADX24962.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 539

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 125/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +       QA+++AP 
Sbjct: 25  SPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ +   + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   LIL  V        DE    G        +++       LL +AT P P + + + 
Sbjct: 135 KRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  +I  K      +    + +   ++     +++     +   +  +       
Sbjct: 195 FMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D+ 
Sbjct: 249 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR  +    I    P 
Sbjct: 307 GVTHVYNYDITQDPESYVHRI-GRTGRAGKSGESITFVSPN 346


>gi|281424310|ref|ZP_06255223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
 gi|281401579|gb|EFB32410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
          Length = 544

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 125/360 (34%), Gaps = 38/360 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE+ I +IL+          +     G+GKT   L+ + + ++ GG        +IM
Sbjct: 27  TPVQENCIPEILKG------NDVLGVAQTGTGKTAAYLLPILSKLDDGGYPDNAINCLIM 80

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ +      +  +        +R     +     A I+I T     
Sbjct: 81  SPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQELKSLQLGADIVIATPGRLI 140

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
             I    +        IL   D     G    +    K    +          +T++ ++
Sbjct: 141 SHISLGNVDLSKVSFFILDEADRMLDMGFSDDIIKIAKKLPQNC---------QTIMFSA 191

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
                I  + +       +    + +++  E I++   V  E +K   I    +      
Sbjct: 192 TMPDKIEDLAKTLLKNPKVIK--LAVSKPAEKIKQSAYVCYETQKMGIIKDIFKNGDLER 249

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V++     +    +   +H  +    ++ VM  FK+G   +L+AT ++  
Sbjct: 250 VIIFCGSKLKVKQVAGALQRKHINCGEMHSDLDQATRDDVMFKFKSGQFDVLVATDIVAR 309

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+ D +++I  +  H     +H++ GR  R     S I                 L+ 
Sbjct: 310 GIDIDDIAMVINYDVPHDAEDYVHRI-GRTARAAREGSAITFVSEDDIYYFQQIEKFLEK 368


>gi|256821842|ref|YP_003145805.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795381|gb|ACV26037.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 460

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/381 (17%), Positives = 141/381 (37%), Gaps = 36/381 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ F   T  Q  A+  +L+          I Q   GSGKT V  + +   ++     
Sbjct: 19  LADLGFERMTPIQADALPQVLEGKDV------IAQAKTGSGKTAVFGLGILEKLDPKNFS 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA+Q  E I++  +    + +  + G  P   +  +L+      AHI++
Sbjct: 73  VQSMVLCPTRELAEQVAEEIRRLARPIANVKILTLCGGTPLRPQADSLKH----GAHIVV 128

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D ++   L L  +     DE  R              +   ++       +TL
Sbjct: 129 GTPGRIVDHLEKQTLDLDAISTLVLDEADRMLDMGFED------SMDAIVNELPRQRQTL 182

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I  I E+    KP+    +  +    + +    +  EG++   +   + + 
Sbjct: 183 LFSATYPPQIQAIAER-VMVKPVLVQALEKHDSSSIKQDFYRISDEGERDVAVRLLLLKY 241

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +  V+      +    S+  +HG +   +++  +  F N +  +++AT 
Sbjct: 242 RPDSTVIFCNTKRHVKDLTQELKRHGFSVLALHGDLEQKERDQALIRFANNSVSIMVATD 301

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+    ++I  +        +H++ GR GR         +              
Sbjct: 302 VAARGLDIDSLDLVINYHIASDPEIHVHRI-GRTGRAGNKGHACSIVISKEKHKVARLAE 360

Query: 610 VLKNTEDGFLIAEEDLKQRKE 630
            L    +   IA  D +  KE
Sbjct: 361 YLGQEIE--PIALPDTQLLKE 379


>gi|212534920|ref|XP_002147616.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|212534922|ref|XP_002147617.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|242791505|ref|XP_002481771.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|210070015|gb|EEA24105.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|210070016|gb|EEA24106.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|218718359|gb|EED17779.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 399

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVVRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + LE       H++ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEYGQ----HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 157 MIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 208 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQ 266

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 267 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 326

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 327 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTSD 371


>gi|163739630|ref|ZP_02147039.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
 gi|161387089|gb|EDQ11449.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
          Length = 458

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 129/361 (35%), Gaps = 28/361 (7%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           +  + ++ PT  Q  AI   L           +     G+GKT    + + A +   G+ 
Sbjct: 33  IAELGYTDPTPIQARAIPHALNGQDV------LGLAQTGTGKTAAFGVPLIAQMMQYGRK 86

Query: 324 -------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                   +++AP   LA Q    +K  T+ T I   ++ G +    +   L R      
Sbjct: 87  PAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQISRLSR----GT 142

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I+I T     D +    L L   D        Q L L        +         +T++
Sbjct: 143 DILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKI-AALLPEQRQTML 201

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     +++I      + P++  + P  +  + I +    +++ +K   +   +   K
Sbjct: 202 FSATMPKQMNEIANSYL-QSPVRIEVNPPGKAADKITQSVHFIAKAEKLSLLKELLGAHK 260

Query: 497 ESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  +E+          S A IHG  S   +E  + SFK+G  K+L+AT V
Sbjct: 261 DERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVKILVATDV 320

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D   +      +   A +H++ GR  R  +    +    P            
Sbjct: 321 AARGLDIPDVKYVYNYELPNVPDAYVHRI-GRTARAGKDGQAVAFCAPDEMGELKAIQKT 379

Query: 611 L 611
           +
Sbjct: 380 M 380


>gi|160937140|ref|ZP_02084503.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440041|gb|EDP17789.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
           BAA-613]
          Length = 569

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 127/348 (36%), Gaps = 36/348 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           +  + F   +  Q  AI   ++          I Q   G+GKT    + +   V+     
Sbjct: 19  ITEMGFEEASPIQAQAIPVAMEGRD------MIGQAQTGTGKTAAFGLPLLQKVDPKVKK 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  E ++++ +    + V  I G      + ++L+        +I+
Sbjct: 73  LQAIVLLPTRELAIQVAEEMRRFAKFMHGVKVLPIYGGQDIVKQIRSLKD----GTQVIV 128

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   +        +L   DE    G  + +   L+Q       L+ +AT 
Sbjct: 129 GTPGRVMDHMRRKTVKVDHVLTVVLDEADEMLNMGFLEDMETILSQLPEERQTLMFSATM 188

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
                 +      D    ++ +K      +      +   ++V    +++     K   +
Sbjct: 189 PQAIAEIARKFQKDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMSRLLDMYAPKLSIV 248

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                    +  R V +    L      +  + HG +  + ++ VMDSF+NG   +L+AT
Sbjct: 249 F-------CNTKRQVDDLVQELQGRGYFAEGL-HGDLKQVQRDRVMDSFRNGRTDILVAT 300

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            V   GIDV D   +   +        +H++ GR GR         L 
Sbjct: 301 DVAARGIDVGDVEAVFNYDIPQDDEYYVHRI-GRTGRAGREGKAFSLV 347


>gi|329769092|ref|ZP_08260513.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325]
 gi|328839438|gb|EGF89015.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325]
          Length = 486

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/343 (21%), Positives = 127/343 (37%), Gaps = 37/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
           SPT  Q   I  +   +        + Q   GSGKT    I +   V+     Q++++AP
Sbjct: 24  SPTGIQTETIPYVFSGID------ILAQAQTGSGKTGAFGIPIVDIVKRSEDLQSLVLAP 77

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ  E ++   +   + V II G      + + L++    +  I++GT     D 
Sbjct: 78  TRELAQQVGEQLRLMARAKGLKVSIIFGGTSIERQIQDLKK----RPQIVVGTPGRVIDH 133

Query: 390 IQYY--------KLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           I            L+L   DE    G  +  R  L++  +    LL +AT     + L+ 
Sbjct: 134 INRRTLKLDKLTHLVLDEADEMLNMGFIEDVRFILSKITSNHQTLLFSATMPKTIMELSK 193

Query: 440 LGDIDISKITEK-PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               D   I         P       I R +E +E L   L        I          
Sbjct: 194 DFMKDYKLIKTMSDEDLNPDIKEYATIARENEKLETLVGFLDVQNPNLAIV--------- 244

Query: 499 NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F     R + L     +       +HG ++   +  ++  FKN + ++L+AT V   GI
Sbjct: 245 -FGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQILVATDVAARGI 303

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           D+ D + +   +      +  H++ GR GR  +    +   +P
Sbjct: 304 DISDVTHVYNFDIPQDTESYTHRI-GRTGRAGKSGVAVTFLNP 345


>gi|323342110|ref|ZP_08082343.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464535|gb|EFY09728.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 475

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 133/358 (37%), Gaps = 28/358 (7%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + +  KI Q +       PT  QE AI  +L    + N ++ + Q   G+GKT    +  
Sbjct: 6   LGINEKILQALTEQGYEKPTPIQEQAIPTLL----KHNDLIGLAQ--TGTGKTAAFAVPT 59

Query: 315 AAAVEAGG---------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
              ++            +A+++ P   LA Q  E  + Y +   +   ++ G + Q ++ 
Sbjct: 60  LQNLKEKAFDRNGKRKIRALVLTPTRELAIQIQENFEMYGKYMDLRSTVVFGGVAQRYQV 119

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
           KAL          +I T    +D +    + L  + E        R+           ++
Sbjct: 120 KALRN----GVDTLIATPGRLEDLMSQGYIDLSQI-EIFILDEADRMLDMGFINDVKRII 174

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
                  +TL+ ++    +IS I E      P    + P++   E +E+    + +  K 
Sbjct: 175 KKLPKKKQTLLFSATMPSEISSIAEMLLN-NPTTVAVTPVSSTVETVEQSVYYVDQRNKT 233

Query: 486 YWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +   +E K           +   +R          +   IHG  S   ++  +  FK+
Sbjct: 234 QLLIDVLENKSFDSVLVFTRTKRGADRVARDLCRSNINAVAIHGDKSQGARQRALSGFKD 293

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GT  +++AT +   GID+ +   ++           +H++ GR GR     + I   +
Sbjct: 294 GTINVMVATDIAARGIDINELKYVVNYELPEVPETYVHRI-GRTGRAGFSGAAISFCN 350


>gi|169409547|gb|ACA57893.1| DEAD box polypeptide 43 (predicted) [Callicebus moloch]
          Length = 680

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/383 (16%), Positives = 134/383 (34%), Gaps = 39/383 (10%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
             +   ++ + I ++    PT  Q  A   +LQ +        I     G+GKTL  L+ 
Sbjct: 244 AFHYYPEVMENIKKSGFKKPTPIQAQAWPIVLQGID------LIGVAQTGTGKTLCYLMP 297

Query: 314 MAAAVEAGGQA---------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
               ++              +++ P   LA Q      KY+    +    + G   +  +
Sbjct: 298 GFIHLDLQPTVKGQRNRPGMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQ 356

Query: 365 RKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            + L +       III T     D      +    +  +++DE  +           K  
Sbjct: 357 IEELRK----GVDIIIATPGRLNDLQMNNFVNLRNITYLVLDEADKMLDMGFEPQIMK-- 410

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERL 475
               +L+   P  +T++ ++     + ++ +       +  V    ++ ++ +++ I   
Sbjct: 411 ----ILLDVRPDRQTIMTSATWPRSVHRLAQSYLKEPMLVYVGTLDLVAVSSVEQNIIVT 466

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKES 532
                      ++       K   F S     + L         SI  +HG     D+E 
Sbjct: 467 TEEEKWIHIQTFLQSMSSTDKVIVFVSRKAVADHLSSELILGNMSIESLHGDREQRDREK 526

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            +++FK G  ++LIAT +   G+DV D + +   +        +H++ GR GR       
Sbjct: 527 ALENFKTGKVRILIATDLASRGLDVHDITHVYNFDFPRNIEEYVHRI-GRTGRAGRTGVS 585

Query: 593 ILLYHPPLSKNSYTRLSVLKNTE 615
           I        + +   +++L+   
Sbjct: 586 ITTMTRNDWRFAPELVNILQRAN 608


>gi|238028570|ref|YP_002912801.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
 gi|237877764|gb|ACR30097.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
          Length = 483

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 127/363 (34%), Gaps = 41/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
            PT  Q  AI  +L           +     G+GKT    + +   + A       G +A
Sbjct: 23  EPTPIQTQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLNAFQPANANGKRA 76

Query: 325 ---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +I+ P   LA Q  E ++ Y +  ++   ++ G +    +  AL+R       I++ 
Sbjct: 77  VRALILTPTRELAAQVEESVRAYGKYLKLRSTVMFGGVSINPQIDALKR----GVDIVVA 132

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPI 431
           T     D +Q           L+L   D     G    +K  L +       LL +AT  
Sbjct: 133 TPGRLLDHMQQKTIDVSQLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  + L    + ++  +    + I   I P++R D   E L  ++ E     W  
Sbjct: 193 DEIKALADSLLDSPALIEVARRNTTAETIAQKIHPVDR-DRKREMLTHLIREHN---WFQ 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +  +     +    R          S   IHG  S   +   +  FK GT ++L+AT 
Sbjct: 249 VLVFTR----TKHGANRLAEQLTKDGISALAIHGNKSQSARTRALSEFKAGTLQVLVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   GID+     ++     +     +H++ GR GR       + L              
Sbjct: 305 IAARGIDIDQLPHVVNYELPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKPLLRDIER 363

Query: 610 VLK 612
           ++K
Sbjct: 364 LIK 366


>gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           112]
          Length = 400

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 125/368 (33%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAKAIPVVLSGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATP 430
            T     D +Q           L+L   D     G    L+            LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    A    +  ++  +   D+    +K++     K   +
Sbjct: 203 SPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      A IHG  S  ++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 373

Query: 609 SVLKNTED 616
            ++K T  
Sbjct: 374 KLIKRTLS 381


>gi|67902058|ref|XP_681285.1| hypothetical protein AN8016.2 [Aspergillus nidulans FGSC A4]
 gi|74656894|sp|Q5AUL4|FAL1_EMENI RecName: Full=ATP-dependent RNA helicase fal1
 gi|40740448|gb|EAA59638.1| hypothetical protein AN8016.2 [Aspergillus nidulans FGSC A4]
 gi|259480767|tpe|CBF73711.1| TPA: ATP-dependent RNA helicase fal1 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5AUL4] [Aspergillus
           nidulans FGSC A4]
          Length = 399

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 127/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I+    ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISALQVIDTVVRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + L+       H++ GT     D
Sbjct: 101 PTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQ----HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 157 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E I++  + +  E  K   +C   +      
Sbjct: 208 LPYDVLDMTTKFMT-DPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQ 266

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 267 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 326

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 327 GIDVQQVSLVINYDLPTNRENYIHRI-GRSGRFGRKGVAINFVTSD 371


>gi|118579192|ref|YP_900442.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118501902|gb|ABK98384.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 447

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 129/355 (36%), Gaps = 34/355 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ----AVIM 327
           +PT  Q+ +I  ++      + ++ + Q   G+GKT    + +   +  G Q    A+I+
Sbjct: 23  TPTPIQKQSIPPVMAG----SDVMGLAQ--TGTGKTAAFALPILHRLMEGKQGTVRALII 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA+Q    I +    T +    + G +    + + L R       I++       
Sbjct: 77  APTRELAEQINTSIAQLGAKTGLKSMTVYGGVSVNPQIERLRR----GVDIVVACPGRLL 132

Query: 388 DSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           D I            L+L   D+    G     R  L         LL +AT       L
Sbjct: 133 DHINQGTIDLSRIEVLVLDEADQMFDMGFLPDIRRVLKHLPAQRQTLLFSATMPDDIRRL 192

Query: 438 TSLGDIDISKI-TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            S        +     A    +   + P+++  +    L+++     ++  I  +     
Sbjct: 193 ASDILRQPITVQAGSTAPPVTVSHALYPVSQHLKTPLLLELLRHTDTESVLIFART---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   +R     E        + G +S   +++ +D F++GT ++++AT +   GID
Sbjct: 249 ----KHRAKRLGEQLEKAGYRATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAARGID 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           V   S ++  +      A +H++ GR GR         L  P  +    T    L
Sbjct: 305 VSQISHVVNYDIPDTAEAYIHRI-GRTGRAARSGDAFTLVTPDDNAMVRTIEKKL 358


>gi|332637958|ref|ZP_08416821.1| putative ATP-dependent RNA helicase [Weissella cibaria KACC 11862]
          Length = 524

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/337 (19%), Positives = 126/337 (37%), Gaps = 34/337 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           T  QE  I   L           I Q   G+GKT    + +   ++      QA++++P 
Sbjct: 25  TPIQEQTIPLTLAGKDV------IGQAQTGTGKTAAFGLPILNMIDTDSNQVQALVVSPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  + + K  ++ ++ V+ + G      +   L       AHI++GT     D I
Sbjct: 79  RELAIQTQDELFKLGRDKRVKVQAVFGGADIRRQINGL----SHGAHIVVGTPGRLIDHI 134

Query: 391 QY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTLVLT 438
                       L+L   DE    G  + +   L         LL +AT  P  + + + 
Sbjct: 135 NRGTINLSNVKTLVLDEADEMLNMGFLEDIESILKAVPDQRQTLLFSATMPPAIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  +I  K      ++   + +   ++      ++  +  K   +  +       
Sbjct: 195 FMTEPEHIQIAAKELTTDLVEQYYVRVRDFEKFDTLTHILDVQQPKLAIMFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      E    + A IHG ++   +  V+  FKNG  K+L+AT V   G+DV 
Sbjct: 249 --KRRVDELTRGLELRGFNAAGIHGDLTQQKRSQVLKQFKNGEIKILVATDVAARGLDVS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
               +   +      + +H++ GR GR     + +  
Sbjct: 307 GVDYVYNFDIPQDSESYVHRI-GRTGRAGAHGTSVTF 342


>gi|120601130|ref|YP_965530.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           vulgaris DP4]
 gi|120561359|gb|ABM27103.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
          Length = 532

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 128/353 (36%), Gaps = 48/353 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           +  + F  P+  Q  AI  +L+          I Q   G+GKT    + +   ++A    
Sbjct: 20  IEELGFTEPSPIQSIAIPRLLEGRDV------IGQAQTGTGKTAAFGLPLLQRIDAADRS 73

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +    ++   + +  + G  P   +  AL R     A +++
Sbjct: 74  VQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALRR----GAQVVV 129

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D I    L L +V        DE    G ++ +   L++          +AT 
Sbjct: 130 GTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQSAFFSATM 189

Query: 431 IPRTLVLT--SLGDIDISKITEK---PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
               L L    L + ++ ++T +    A  +     + P  R+D V       +      
Sbjct: 190 PDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFDAYIPRKAIV 249

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTC 542
           +              R+  +  + L             +HG ++   +E VM  F+ G  
Sbjct: 250 F--------------RATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGI 295

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            +L+AT V   G+DV D   +I  +  +     +H++ GR GR          
Sbjct: 296 SVLVATDVAARGLDVDDVDTVINFDLPNDPETYVHRI-GRTGRAGRTGQAFSF 347


>gi|91781411|ref|YP_556617.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400]
 gi|91685365|gb|ABE28565.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400]
          Length = 467

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 160/444 (36%), Gaps = 59/444 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +++   L           I Q   GSGKT    +A+ A ++     
Sbjct: 24  LTQLGYVEMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDVRNFA 77

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    I V  + G  P   +  +LE      AHI++
Sbjct: 78  VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH----GAHIVV 133

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D ++   L L     +++DE  R                  ++       +TL
Sbjct: 134 GTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIA------TVVKQCPKERQTL 187

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I K++++       K V +     +  I +    ++E ++ + +   +   
Sbjct: 188 LFSATYPEGIVKLSQQFLRNP--KEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLNHY 245

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 246 RPVSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATD 305

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP----------- 598
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 306 VAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQEGWALSLASMNEMGRVGSLEQ 364

Query: 599 --PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLIA 647
                   +    +   + +  L   E L+           G++LG    ++G     I 
Sbjct: 365 AQKRDVEWHKLSELTATSNEPLLPPMETLQILGGRKEKIRPGDVLGALTGEAGFAGSQIG 424

Query: 648 QPELHDS--LLEIARKDAKHILTQ 669
           +  + +    + + R  A+  + +
Sbjct: 425 KINVTEMSTYVAVERSVAREAVRK 448


>gi|114331652|ref|YP_747874.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas
           eutropha C91]
 gi|114308666|gb|ABI59909.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
          Length = 488

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 134/377 (35%), Gaps = 40/377 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q   I  IL           +     G+GKT    + +   ++A            
Sbjct: 28  PTPIQAQVIPPILAGKDV------MASAQTGTGKTAGFTLPLLHHLQAHASSSTSPARHP 81

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+IMAP   LA Q  E ++KY +   +   ++ G +    +   L         I++ 
Sbjct: 82  VRALIMAPTRELAMQIDESVRKYGKYLALRTTVVFGGVNIEPQITELRN----GVEILVA 137

Query: 382 THALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D ++     + K  ++++DE  R      L   +K       +M   P  R  +
Sbjct: 138 TPGRLLDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKK-------VMALLPSQRQSL 190

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           + S    D  +       + P++  +   N I+E I  +   +    K   +   ++++ 
Sbjct: 191 MFSATFSDEIRKLADGLLKHPVRIEVAAQNTINESISHVVHRIKPESKFALLLHLVKQQD 250

Query: 497 ------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +    +   +  H       IHG  +   +   +  FK+G  ++L+AT V
Sbjct: 251 LKQALVFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHGDVQILVATDV 310

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GID+   S ++           +H++ GR GR       I L     ++   +   +
Sbjct: 311 AARGIDIEKLSHVVNYELPGNPEDYVHRI-GRTGRAGSKGKAISLVSEHETELLTSIEKL 369

Query: 611 LKNTEDGFLIAEEDLKQ 627
           L    +   IA  D + 
Sbjct: 370 LNTKLEIEQIAGFDAEL 386


>gi|58265474|ref|XP_569893.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108955|ref|XP_776592.1| hypothetical protein CNBC0850 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74686072|sp|Q5KJJ2|FAL1_CRYNE RecName: Full=ATP-dependent RNA helicase FAL1
 gi|50259272|gb|EAL21945.1| hypothetical protein CNBC0850 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226125|gb|AAW42586.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 396

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 128/344 (37%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ AI  I++          I Q   G+GKT    I+M  +++      QA++++
Sbjct: 45  KPSAIQQRAIIPIIRGRDV------IAQAQSGTGKTATFSISMLQSIDTNLRETQALVLS 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + LE        ++ GT     D
Sbjct: 99  PTRELAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRKLEAGQ----QVVSGTPGRVFD 154

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        IL   DE    G + ++    +            P  + +V+++ 
Sbjct: 155 MIRRRNLRTKDIKMLILDESDELLNKGFKDQIYDIYRYLP---------PATQVVVVSAT 205

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+ ++T K     P++ ++       E I++  V +  E  K   +C   +      
Sbjct: 206 LPHDVLEMTTKFMT-DPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLTITQ 264

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++++M  F+ G  ++LI T V   
Sbjct: 265 AVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLITTDVWAR 324

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GIDV   S++I  +        LH++ GR GR       I    
Sbjct: 325 GIDVQQVSLVINYDLPTSRENYLHRI-GRSGRFGRKGVAINFVT 367


>gi|172058935|ref|YP_001815395.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171991456|gb|ACB62378.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 410

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 81/389 (20%), Positives = 144/389 (37%), Gaps = 31/389 (7%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            ++++ +  +K+ +     PT  QE AI  +L           I +   G+GKTL  L+ 
Sbjct: 6   ALHIQEQWVKKLQKQGIKQPTPIQEQAIPHLLAGRD------LIGKAQTGTGKTLAFLLP 59

Query: 314 MAAAVE---AGGQAVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +   ++      QA+I+AP   LA Q   E  K       I    + G      + + L 
Sbjct: 60  ILEQIDLESKTVQALIVAPTRELARQIADETHKLIRNMEDIRALAVYGGQDVFKQIQRLG 119

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           R+      IIIGT     D +    L L  +         Q L++        ++   A 
Sbjct: 120 RM----PQIIIGTPGRILDHVGRGTLDLSELKTLVLDEADQMLQIGFLPEIEDII--AAA 173

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P+ R  V+ S    +  +   K   R PI+  +       + IE+  V  ++ +K   + 
Sbjct: 174 PVDRQFVMLSATMPEKVEQLAKTYLRDPIEVQVEAEKVTVDAIEQFVVETTDRRKQATLR 233

Query: 490 PQIEEKK---ESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
             ++E +      F     R + L+E           +HG ++   +E  M  F  G   
Sbjct: 234 TMLDEMRPYAAIIFCRTQRRVSKLNEELQMQGYPTDELHGGLTQGKREKAMAKFYQGKTP 293

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
            LIAT V   G+DV   + +   +      + +H++ GR GR       I +  P   ++
Sbjct: 294 FLIATDVASRGLDVTGVTHVFNYDLPDDAESYVHRI-GRTGRAGNDGVAISIVTPRDGRS 352

Query: 604 SYTRLS--------VLKNTEDGFLIAEED 624
                         ++    D  + A+ D
Sbjct: 353 FRDMERELGVEVTPIVVELSDEMIRAQHD 381


>gi|253582317|ref|ZP_04859540.1| ATP-dependent RNA helicase [Fusobacterium varium ATCC 27725]
 gi|251835856|gb|EES64394.1| ATP-dependent RNA helicase [Fusobacterium varium ATCC 27725]
          Length = 527

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/342 (19%), Positives = 124/342 (36%), Gaps = 34/342 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           I Q   G+GKT    + +    E G   QA+++AP
Sbjct: 27  KPTPIQALTIPALLDGEK-----DIIGQAQTGTGKTAAFSLPILERFEPGKVVQAIVLAP 81

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +       +I +  + G      + + L++       II+GT     D 
Sbjct: 82  TRELAIQVAEEMNSLANGKKIRITPVYGGQSIEFQIRQLKK----GTDIIVGTPGRVMDL 137

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTS 439
           +    + L  +        DE    G  + ++   ++T     +L  +AT     L +  
Sbjct: 138 MDRKLIKLDNLKYFILDEADEMLNMGFLEDVEKILESTNDDKRMLFFSATMPNEILKVAK 197

Query: 440 LGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIEEKK 496
               D   +    +         +   ++  D+     +++ L++       C    +  
Sbjct: 198 KHMRDYEVLAVKTRELTTDLTDQIYFEVHERDKFEALCRIIDLTKDFYGIVFCRTKNDVN 257

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           +   +     +++           +HG +S   +E  +  FK     +L+AT V   GID
Sbjct: 258 DVVGKLNDRGYDA---------EGLHGDISQNYREVTLKRFKAKKINVLVATDVAARGID 308

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           V D S +I  +      + +H++ GR GR  +  + I    P
Sbjct: 309 VNDLSHVINYSIPQEAESYVHRI-GRTGRAGKEGTAITFITP 349


>gi|194445037|ref|YP_002040904.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403700|gb|ACF63922.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 457

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 137/358 (38%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVSLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKETVSLDAL-HILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   ++PI+  I  ++ +   IE+     S  +K   +   + + K    
Sbjct: 187 WPEAIAAISGR-VQQQPIRIEIDTVDALP-AIEQQFFETSAHEKISLLQTLLSQHKPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNYELAWDPEVHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQ 361


>gi|170744521|ref|YP_001773176.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168198795|gb|ACA20742.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 499

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/367 (17%), Positives = 129/367 (35%), Gaps = 29/367 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------G 321
           +PT  Q  A+   +                 G+GKT    + +   + +          G
Sbjct: 24  TPTPIQAQAVPQAMAGRD------LCGIAQTGTGKTAAFALPILHRLASETPQRRAPRRG 77

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            + ++++P   LA Q  E    Y +       ++ G +    + +AL         I++ 
Sbjct: 78  CRVLVLSPTRELASQIAESFGDYGKFLPFSTTVVFGGVTIGRQERALAN----GVDILVA 133

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D I    L L  V+        Q L L        ++ +      ++L  ++  
Sbjct: 134 TPGRLLDLIDRRSLSLDAVEYLVLDEADQMLDLGFIHALKRIVTLL-PKARQSLFFSATM 192

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE------K 495
             +I+ +  +   R P++  + P+    E +E+  V +  G K   +   + +       
Sbjct: 193 PRNIATLAAQYL-RDPVQVAVTPVATTAERVEQRVVHVPTGAKQALLATILRDASIDRVL 251

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  +   +R     E      A IHG  S   +E  + +F+ G C++L+AT +   GI
Sbjct: 252 VFTRTKHGADRVVRGLEKAGIGSAAIHGNKSQPQRERALAAFRAGICRVLVATDIAARGI 311

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   A +H++ GR  R       I   +            + +   
Sbjct: 312 DVEGVSHVVNFDLPNVPEAYVHRI-GRTARAGADGLAISFCNDEERAYLRDIERLTRQKV 370

Query: 616 DGFLIAE 622
               I E
Sbjct: 371 PEMAIPE 377


>gi|19113775|ref|NP_592863.1| ATP-dependent RNA helicase, eIF4A related (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1352438|sp|Q10055|FAL1_SCHPO RecName: Full=ATP-dependent RNA helicase fal1
 gi|1103737|emb|CAA92238.1| ATP-dependent RNA helicase, eIF4A related (predicted)
           [Schizosaccharomyces pombe]
          Length = 394

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 134/372 (36%), Gaps = 39/372 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q  AI  I +          I Q   G+GKT    I +  +++      QA+I++
Sbjct: 43  TPSAVQSRAIIQICKGRDV------IAQAQSGTGKTATFSIGILQSIDLSVRDTQALILS 96

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +     +  +      G     +  K L+       H++ GT     D
Sbjct: 97  PTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQ----HVVSGTPGRVTD 152

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        IL   DE    G ++++    +            P  + +V+++ 
Sbjct: 153 MIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLP---------PGTQVVVVSAT 203

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+ ++T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 204 LPQDVLEMTNKF-TTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQ 262

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           ++  +HG M   +++++M  F+ G  ++LI T +   
Sbjct: 263 AVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWAR 322

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GIDV   S++I  +        +H++ GR GR       I        +           
Sbjct: 323 GIDVQQVSLVINYDLPANRENYIHRI-GRSGRFGRKGVAINFVTNEDVRILRDIEQYYST 381

Query: 614 TEDGFLIAEEDL 625
             D   +   D+
Sbjct: 382 VIDEMPMNIGDM 393


>gi|312797197|ref|YP_004030119.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
 gi|312168972|emb|CBW75975.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
          Length = 555

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 126/363 (34%), Gaps = 39/363 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L           +     G+GKT    + +   +            +
Sbjct: 29  TPTPIQRQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILERLSHSRATSGKIPVR 82

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  + +++Y +  ++   ++ G +    +  AL R       I++ T 
Sbjct: 83  ALILTPTRELAAQVEQSVREYGKYLKLRSTVMFGGVGINPQIDALRR----GVDIVVATP 138

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPR 433
               D +Q           L+L   D     G    +K  L    +    LL +AT    
Sbjct: 139 GRLLDHLQQRTIDLSSLQILVLDEADRMLDMGFIHDIKRVLKYLPSQRQNLLFSATFSDE 198

Query: 434 T--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L    L    + ++  +    + +   I P++R  +      ++ +       +  +
Sbjct: 199 IKALADNLLDSPALIEVARRNTTAETVTQTIYPVDRDRKRELLTHLIKAHNWFQVLVFTR 258

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +    R          S   IHG  S   +   +  FK+GT ++L+AT + 
Sbjct: 259 T--------KHGANRLAEQLTKDGISALAIHGNKSQAARTRALSEFKDGTLQVLVATDIA 310

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+     ++  +  +     +H++ GR GR       I L      +       ++
Sbjct: 311 ARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAISLVCIDEHQLLTDIERLI 369

Query: 612 KNT 614
           K T
Sbjct: 370 KRT 372


>gi|330934418|ref|XP_003304540.1| hypothetical protein PTT_17169 [Pyrenophora teres f. teres 0-1]
 gi|311318781|gb|EFQ87363.1| hypothetical protein PTT_17169 [Pyrenophora teres f. teres 0-1]
          Length = 1166

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 130/373 (34%), Gaps = 45/373 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  AI               I     GSGKTL   I M   +          G  
Sbjct: 546 KPTAIQSQAIPIAESGRD------LIGVAKTGSGKTLAFGIPMIRHILDQRPLKPSDGPI 599

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   L+ Q    +K +   + I ++   G  P + +   L+R   G  HI+  T 
Sbjct: 600 GLILAPTRELSLQIVHELKPFLAASGITIKCAYGGQPISEQIAMLKR---GGIHILCATA 656

Query: 384 ALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D I         + ++  V++DE  R           K      +L    P  +T+
Sbjct: 657 GRLIDLISCNSGRVLSFKRITYVVLDEADRMFDMGFEPQVMK------ILANVRPDRQTI 710

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY--------W 487
           + ++    ++  + +K        T+        E+ + + VV     K           
Sbjct: 711 LFSATMPKNMHALAKKALKDPVEITIGGKSKVAAEITQIISVVPPSYDKKINKTLLHLGQ 770

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFT----SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +  + E  +   F    E    L          S+  IHG     D+   +  FK G   
Sbjct: 771 LFAEDENAQVLIFTERQETAEDLLSKLYKAKYFSVNTIHGAKDQTDRNEAISDFKQGVLS 830

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPLSK 602
           +LIAT+V   G+DV   +++   +        +H+  GR GR     + I L  +P   +
Sbjct: 831 ILIATSVAARGLDVPGLAMVFNFDCPTHLEDYVHR-CGRTGRAGNKGTAITLIENPGQER 889

Query: 603 NSYTRLSVLKNTE 615
            +   +  LK ++
Sbjct: 890 FAVHIVKALKESD 902


>gi|201067640|gb|ACH92926.1| vasa protein [Parhyale hawaiensis]
          Length = 707

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 77/413 (18%), Positives = 133/413 (32%), Gaps = 73/413 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
           +PT  Q   I  I   M+ ++ M        GSGKT   L+ +   + A           
Sbjct: 293 TPTPIQRVCIPTI---MAGRDIM---GCAQTGSGKTAAFLLPILHGILASGGGNSGSMSS 346

Query: 321 --GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                AV++AP   LA Q +   +K+  ++ +   +  G      + + L+        +
Sbjct: 347 TAEPSAVVVAPTRELAIQIHNEARKFALDSIVRTVVCYGGASMNSQYRQLQNGCA----V 402

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP------HVL 424
           ++ T     D +   +        L+L   D     G    ++                L
Sbjct: 403 LVATPGRLNDFVTRGRVSFSSVRYLVLDEADRMLDMGFIGDIEKIVNHQTMPAVGQRQTL 462

Query: 425 LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLS 480
           L +AT     +TL    L +     +    A    +   +  +P  +  EV+        
Sbjct: 463 LFSATFPEEIQTLACNHLQNYVFYAVGTVGAANTDVCQEVLNVPRQQKREVLMSKIEEFM 522

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
                  +   +E K+ ++F        +L      +   IHG      +E  +  FK G
Sbjct: 523 ANGDNKVLI-FVETKRTADF------LATLLSSQQLNSTSIHGDRFQSQREEALAQFKAG 575

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
              +L+AT V   G+D+   S +I  +        +H++ GR GR       +  Y    
Sbjct: 576 IRSILVATAVAARGLDIRGVSHVINYDLPKEVDEYVHRI-GRTGRVGNKGHAVSFYDEEQ 634

Query: 600 -----------LSKNSYTRLSVLKN--TEDGFL--------IAEEDLKQRKEG 631
                      L+  S      LKN     G           A  D   R EG
Sbjct: 635 DGALAKNLVKILTDASQEVPEWLKNAAAHSGHSQTYHGVGDFASHD--IRGEG 685


>gi|161723024|gb|ABX76969.1| Vasa [Parhyale hawaiensis]
          Length = 676

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 77/413 (18%), Positives = 133/413 (32%), Gaps = 73/413 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
           +PT  Q   I  I   M+ ++ M        GSGKT   L+ +   + A           
Sbjct: 262 TPTPIQRVCIPTI---MAGRDIM---GCAQTGSGKTAAFLLPILHGILASGGGNSGSMSS 315

Query: 321 --GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                AV++AP   LA Q +   +K+  ++ +   +  G      + + L+        +
Sbjct: 316 TAEPSAVVVAPTRELAIQIHNEARKFALDSIVRTVVCYGGASMNSQYRQLQNGCA----V 371

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP------HVL 424
           ++ T     D +   +        L+L   D     G    ++                L
Sbjct: 372 LVATPGRLNDFVTRGRVSFSSVKYLVLDEADRMLDMGFIGDIEKIVNHQTMPAVGQRQTL 431

Query: 425 LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVI--IPINRIDEVIERLKVVLS 480
           L +AT     +TL    L +     +    A    +   +  +P  +  EV+        
Sbjct: 432 LFSATFPEEIQTLACNHLQNYVFYAVGTVGAANTDVCQEVLNVPRQQKREVLMSKIEEFM 491

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
                  +   +E K+ ++F        +L      +   IHG      +E  +  FK G
Sbjct: 492 ANGDNKVLI-FVETKRTADF------LATLLSSQQLNSTSIHGDRFQSQREEALAQFKAG 544

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP- 599
              +L+AT V   G+D+   S +I  +        +H++ GR GR       +  Y    
Sbjct: 545 IRSILVATAVAARGLDIRGVSHVINYDLPKEVDEYVHRI-GRTGRVGNKGHAVSFYDEEQ 603

Query: 600 -----------LSKNSYTRLSVLKN--TEDGFL--------IAEEDLKQRKEG 631
                      L+  S      LKN     G           A  D   R EG
Sbjct: 604 DGALAKNLVKILTDASQEVPEWLKNAAAHSGHSQTYHGVGDFASHD--IRGEG 654


>gi|156052539|ref|XP_001592196.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980]
 gi|160385735|sp|A7EM88|FAL1_SCLS1 RecName: Full=ATP-dependent RNA helicase fal1
 gi|154704215|gb|EDO03954.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 399

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISMLQVIDTAVRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+       HI+ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HIVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 157 MIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 208 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQ 266

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 267 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 326

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 327 GIDVQQVSLVINYDLPVNRENYIHRI-GRSGRFGRKGVAINFVTSE 371


>gi|330817865|ref|YP_004361570.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
 gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
          Length = 485

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 123/358 (34%), Gaps = 30/358 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAKAIPVVLSGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANSSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNSQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q     L  V +        R+           +L       +TL+ ++ 
Sbjct: 143 ATPGRLLDHVQQKTANLGQV-QMLVLDEADRMLDMGFLPDLQRILNLLPKQRQTLLFSAT 201

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
              +I K+        P    +   N     + ++   ++EG K   +   I ++     
Sbjct: 202 FSPEIKKLASTYL-SNPQTIEVARSNATATNVTQVVYEIAEGDKQAAVVKLIRDRSLKQV 260

Query: 497 --ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +    R     E        IHG  S  ++   +D+FK G  + L+AT V   G
Sbjct: 261 IVFCNSKIGASRLARQLERDGVVATAIHGDRSQNERMQALDAFKRGEVEALVATDVAARG 320

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+ +   +I  +        +H++ GR GR       + L  P   K       ++K
Sbjct: 321 LDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIEKLIK 377


>gi|303242080|ref|ZP_07328571.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302590374|gb|EFL60131.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 499

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 74/349 (21%), Positives = 131/349 (37%), Gaps = 33/349 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + F  PT+ Q  AI  IL      N    I+    GSGKT V  ++M   ++    G
Sbjct: 18  LEEMGFEAPTEVQSKAIPHIL------NHEDLIVMSKTGSGKTAVFGVSMLQMIDPKADG 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH------GQ 375
            Q +I+ P   LA Q    +KK  ++       + G        +AL R         G+
Sbjct: 72  PQGLILTPTRELAVQVDNELKKMAKHLDHHTTAVYGQHSMNVEIQALRRGISIVTGTPGR 131

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           A+  I T  L   +I++  LIL   D     G   ++            + T      TL
Sbjct: 132 AYDHIHTGNLITKNIRF--LILDEADRMLDMGFLDQVVKI---------IRTLPKDRVTL 180

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I +I ++   +     +      +D + +    + ++ K        + E+
Sbjct: 181 LFSATIPPEIRRICKEYMKQPLTIEIKSQTKTVDTIEQIYYRIDNQQKNTELNHLLLIER 240

Query: 496 KE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            E      N +  V++  S       +   +HG +    +   +  FK G   LL+AT V
Sbjct: 241 PESCMIFCNTKIAVDKVQSFLSRKGYACQSLHGDIPQARRMKTIQQFKQGDFHLLVATDV 300

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              GI + + S++I  +        +H++ GR GR       + L    
Sbjct: 301 AARGIHIDNLSLVINYDVPLEKDNYVHRI-GRTGRAGNGGRALTLVTSE 348


>gi|298368676|ref|ZP_06979994.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282679|gb|EFI24166.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 443

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 126/344 (36%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT  Q  AI   L+          +     GSGKT   L+     +         G +A
Sbjct: 25  SPTPIQAQAIPFALEGRD------IMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRA 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +    Y +N +      I G     ++ +AL +       +I+ T 
Sbjct: 79  LVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP----VDLIVATP 134

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D      + + +L ++I+DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIET-------IVEATPSDRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  K   + P    +  ++   ++ E+L        K   +   + +   
Sbjct: 188 SATWDGAVGKLARK-LTKNPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E           +   +HG M    +   +   + G CK+L+AT V 
Sbjct: 247 DQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       I  
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRI-GRTGRAGRTGIAITF 349


>gi|218131071|ref|ZP_03459875.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697]
 gi|217986775|gb|EEC53108.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697]
          Length = 428

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 128/357 (35%), Gaps = 33/357 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE +I  IL+          I     G+GKT   L+ +   +  GG        ++M
Sbjct: 25  TPIQEQSIPVILEGRD------LIAVAQTGTGKTAAYLLPVLNKLSEGGHPEDSINCIVM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LAQQ  + ++ ++    +    + G        +    +  G A ++I T     
Sbjct: 79  APTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKRGLTLG-ADVVIATPGRLI 137

Query: 388 DS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                  +   ++   I+DE  R      L +        ++        +T++ ++   
Sbjct: 138 AHLSLGYVDLSRVSYFILDEADRM-----LDMGFYDDIMQIVKFL-PKERQTIMFSATMP 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
             I ++ +          V + +++  E I +   V  E +K   I     E+       
Sbjct: 192 AKIQQLAKSILNNPAE--VKLAVSKPAEKIVQAAYVCYENQKLGIIRSLFAEQTPERVII 249

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +    ++  +H  +    +E VM  FK G   +L+AT ++  GID
Sbjct: 250 FASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGID 309

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + D  ++I  +  H     +H++ GR  R       +   +     N     + L+ 
Sbjct: 310 IDDIRLVINYDVPHDSEDYVHRI-GRTARANNDGVALTFVNEKEQTNFKGIENFLEK 365


>gi|114046038|ref|YP_736588.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113887480|gb|ABI41531.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 622

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 74/367 (20%), Positives = 136/367 (37%), Gaps = 38/367 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--G 322
           L  + +  PT  Q ++I  ++           + Q   G+GKT    + +   V +    
Sbjct: 21  LDELGYEKPTPIQSASIDPLMAGKD------ILGQAQTGTGKTGAFALPLLNKVTSQAVP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E    Y +      V  I G      +  AL+R       +I+G
Sbjct: 75  QILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALKR----GPQVIVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLL--MTATPI 431
           T     D ++   L        +L   DE  + G    ++   + T     L   +AT  
Sbjct: 131 TPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQLALFSATMP 190

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            +   +    L D     I         I+   + +++ +++   ++V+  E  +   I 
Sbjct: 191 EQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGIIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +            VE    L     +S + +HG M+   +E  ++  KNG   +LIAT 
Sbjct: 251 VRTRNS-------CVELAEKLEARGYAS-SPLHGDMNQQARERAVEQLKNGKLDILIATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV     ++  +  +   A +H++ GR GR       IL      S+      +
Sbjct: 303 VAARGLDVERIGHVVNYDIPYDTEAYVHRI-GRTGRAGRTGMAILFVT---SREMRMLRT 358

Query: 610 VLKNTED 616
           + + T  
Sbjct: 359 IERATNS 365


>gi|207367146|dbj|BAG72093.1| vasa [Trachurus japonicus]
          Length = 657

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 131/361 (36%), Gaps = 48/361 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 241 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQKLMADGVAASQFSEL 294

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K+   T +   ++ G +   H+ + + R  +    I+
Sbjct: 295 QEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVASGHQIRDICRGCN----IL 350

Query: 380 IGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKL------TQKATAPHVLL 425
            GT     D I        +   L+L   D     G +  ++              + L+
Sbjct: 351 CGTPGRLLDVIGRGKVGLEKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPTKENRNTLM 410

Query: 426 MTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            +AT    I R        D     +         ++   I + +  +  + + ++ + G
Sbjct: 411 FSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIEVTKFSKREQLVDLLKATG 470

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            +   +  + + + +      +  F S  +  T+SI   HG     ++E  +  F++G C
Sbjct: 471 SERTMVFVETKRQADF-----IATFLSQTKIPTTSI---HGDREQREREQALADFRSGKC 522

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT+V   G+D+ D   ++  +  +     +H++ GR GR       +  Y      
Sbjct: 523 PVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRI-GRTGRCGNTGRAVSFYDQDADG 581

Query: 603 N 603
            
Sbjct: 582 Q 582


>gi|83647393|ref|YP_435828.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83635436|gb|ABC31403.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 453

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 128/346 (36%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
           SP+  Q  AI  +L+          +     G+GKT    + +   +  G        +A
Sbjct: 23  SPSPIQLQAIPVVLEGKDV------MAAAQTGTGKTAAFTLPILERLSKGDRARSNQARA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +  Y+    +   ++ G +    +   L R       +I+ T  
Sbjct: 77  LILTPTRELAAQVGECVSIYSSKLPLRSTVVFGGVKINPQMMRLRR----GVDVIVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L ++++DE  R      +   +K      +L       + L+ ++
Sbjct: 133 RLLDLYNQNAVRFQDLEVLVLDEADRMLDMGFIHDIRK------ILDILPKRRQNLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               DI K+  K     P++  + P N   + +++    + + +K+  +   I +     
Sbjct: 187 TFSNDIRKLA-KELVNNPVEISVSPPNTTAKTVKQWIHPVDKKQKSALLTQLIRDNNWDQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R          + A IHG  S   +   +  FK G+ ++L+AT +   
Sbjct: 246 ALVFSRTKHGANRLTRQLCAKGINAAAIHGDKSQNARTKALADFKTGSVQILVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GID+     ++  +        +H++ GR GR       + L    
Sbjct: 306 GIDIDQLPQVVNFDLPQVAEDYVHRI-GRTGRAGAEGQAVSLVSAD 350


>gi|268565781|ref|XP_002639546.1| C. briggsae CBR-VBH-1 protein [Caenorhabditis briggsae]
          Length = 638

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 140/378 (37%), Gaps = 51/378 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ +I  +L +         +     GSGKT   L+ +   + AGG         
Sbjct: 146 KPTPVQKHSIPTLLFNRD------LMSCAQTGSGKTAAFLLPIIQHIMAGGPDMIKTPTF 199

Query: 324 ----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                     A++++P   LA Q ++   K++  T +   I+ G     + R  + R+  
Sbjct: 200 NNGRRTYYPSALVLSPTRELAIQIHKEAAKFSYKTNLQTAILYGGR--ENYRDQVNRLRS 257

Query: 374 GQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLT----QKATAP 421
           G  HI+I T     D I+           L+L   D     G + +++            
Sbjct: 258 G-VHILIATPGRLIDIIEQGFIGLSGCRYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTA 316

Query: 422 HVLLMTATPIPRTLVL----TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
               M +   P+ + L        +     +    +  + I+  ++ +N +++  + L  
Sbjct: 317 RTTAMFSATFPKEIQLLAKDFLKENYVFLAVGRVGSTSENIEQRLLWVNEMEK-RQNLMD 375

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           +L        +   +E K     R   E    L+     S++I HG +  I++E  ++ F
Sbjct: 376 ILMNEDATNLVLVFVETK-----RGANELAYFLNRQQIRSVSI-HGDLKQIERERNLEMF 429

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G   +L+AT V   G+D+ +   ++  +        +H++ GR GR   +      ++
Sbjct: 430 RSGQFPILVATAVAARGLDIPNVRHVVNYDLPGDSDEYVHRI-GRTGRCGNLGIATSFFN 488

Query: 598 PPLSKNSYTRLSVLKNTE 615
                      +++    
Sbjct: 489 DKNRGIGRDLKTLIMEAN 506


>gi|257457389|ref|ZP_05622560.1| DEAD/DEAH box helicase [Treponema vincentii ATCC 35580]
 gi|257445311|gb|EEV20383.1| DEAD/DEAH box helicase [Treponema vincentii ATCC 35580]
          Length = 646

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 122/345 (35%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            PT  Q  AI  +L           I +   G+GKT    + +   +       +A+++ 
Sbjct: 40  EPTPIQVLAIPRLLNG-----DANVIAKARTGTGKTAAYGLPLVQELREPREKPRALVLV 94

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I+ + + T   +  + G      + + L+R       I+ GT     D
Sbjct: 95  PTRELALQVASEIESFKEGTHPRITTVYGGASIVEQLRNLKRGCE----IVAGTPGRVID 150

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            ++   L L  +        DE    G  + +           +   A P  R L+ ++ 
Sbjct: 151 HLERGSLNLDSIEYFILDEADEMLNMGFIEDI---------ETIFKKANPDSRVLMFSAT 201

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I KI     G   I         +  + E+   ++ E  K+  +   I+  +    
Sbjct: 202 MPKQILKIAADFMGEYEIVEEEASEEPLP-LTEQFFWMVREEDKSEALVRLIDTAENFYG 260

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +   +      +      A +HG +    +E ++  F+ G  ++L+AT V   G
Sbjct: 261 LVFCQTKVDADAVAKELDERHYEAAALHGDIPQGQREKILSRFRAGKTRILVATDVAARG 320

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           ID+   + ++  +  + G    H++ GR GR     + +    P 
Sbjct: 321 IDIEGITHVVNYSIPYDGPTYTHRI-GRTGRAGAKGTAVSFIRPN 364


>gi|256822194|ref|YP_003146157.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795733|gb|ACV26389.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 458

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 145/382 (37%), Gaps = 47/382 (12%)

Query: 262 AQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
            QK  + + F  P++ QE AI+ IL           ++  + GSGKT   L+ +   +  
Sbjct: 14  LQKAFQKLKFEVPSEVQEKAIEPILDGHDV------MVSAETGSGKTAAFLLPIIHNLLE 67

Query: 321 GG------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
                   + +I+AP   LA+Q  +  +  TQ TQI   +I G     +++         
Sbjct: 68  NPSRHTSTRVLILAPTRELARQIDKHARDLTQFTQIKTGLIIGGADYKYQQAIFRD---- 123

Query: 375 QAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
              III T     +  +           L++   D+    G    ++             
Sbjct: 124 NPEIIIATPGRMLEHCEKQGADLNDLEYLVIDEADKMFEMGFTDDVQAIAGFCKSD---- 179

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV----VLSEG 482
                 +TL+ ++       K        +P   V+      ++ IE+  +    ++ + 
Sbjct: 180 -----RQTLLFSATLKTKGIKHLTDYLMDEPQAIVLNSFEAKNDSIEQFIITADDLVHKE 234

Query: 483 KKAYWICPQIEEKKE---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           K   W+    E +K     N +  V+R   L  +   +   +HG +S   +  VM  F++
Sbjct: 235 KLTQWLLTNEEYRKAIVFCNTKEQVDRLGGLIRYHKIAAGTLHGDISQSVRNHVMTQFRD 294

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              K+LIA+ V   GIDV D  ++I  +  H     +H++ GR  R  E    + L    
Sbjct: 295 SKIKVLIASDVAARGIDVKDIDLVINFDMAHNAEDYIHRI-GRTARAGETGKAVSL---- 349

Query: 600 LSKNSYTRLSVLKNTEDG-FLI 620
           +S   +  +  ++    G F +
Sbjct: 350 ISHREWNLMVTIEKAISGSFQL 371


>gi|21243124|ref|NP_642706.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21108643|gb|AAM37242.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 458

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 84/465 (18%), Positives = 170/465 (36%), Gaps = 73/465 (15%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + ++  T  Q  ++  ILQ +        I Q   GSGKT    + +   ++     
Sbjct: 17  IDALGYTVLTPIQAHSLPPILQGLDV------IAQAPTGSGKTAAFGLGLLQKLDPALTR 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + ++K       + + ++TG MP   +  +LE        +++
Sbjct: 71  AQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEA---HDPQVVV 127

Query: 381 GTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    Q+  +           L+L   D     G ++ ++        H          
Sbjct: 128 GTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKH---------R 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           ++L+ ++     I  +  +   ++P++  +   +   E+ ++   V    ++       +
Sbjct: 179 QSLLFSATFPDSIRTLA-RELLKEPVEITVEGADSAPEIDQQFFEVDPTYRQKAVAGLLL 237

Query: 493 EEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
               E      N R  V+      + F  S   +HG M   D++ V+  F N +C +L+A
Sbjct: 238 RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           + V   G+DV D S ++            H++ GR  R  +    + L  P  +  +   
Sbjct: 298 SDVAARGLDVEDLSAVVNYELPTDTETYRHRI-GRTARAGKHGLALSLVAPRETARAQAL 356

Query: 608 LSVLKNTEDGFLI------------------AEEDLKQ-------RKEGEILG--IKQSG 640
                 TE G  +                  A   L+         + G+ILG    ++G
Sbjct: 357 -----ETEQGQPLKWSRAPLATARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAG 411

Query: 641 MPKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           +    I +  ++   S + IAR      L        ++G+  R+
Sbjct: 412 LSGAAIGKIAIYPTRSYVAIARAQVAKALAHL-HAGKIKGRRFRV 455


>gi|113970779|ref|YP_734572.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885463|gb|ABI39515.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 449

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/391 (20%), Positives = 141/391 (36%), Gaps = 48/391 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ ++ Q +      +PT  QE A+   L           +     GSGKTL  L+  
Sbjct: 6   FSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKD------LMASSKTGSGKTLAFLLPA 59

Query: 315 AAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              V       +   + +I+ P   LA Q Y  ++    NTQ     + G      + KA
Sbjct: 60  LQRVISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKAT 419
           L +    + H I+ T     D ++   L        +L   D     G   +LK    A 
Sbjct: 120 LAK----EPHFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAA 175

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG--RKPIKTVIIPINRIDEVIERLKV 477
                        +TL+ ++   +D S+I E  A   + P    I   +   + I +   
Sbjct: 176 DHKR--------RQTLMFSAT--LDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIY 225

Query: 478 VLSEGKKAYWICPQIEEKKESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           +         +  ++   +           R+  ER  S       + A + G +    +
Sbjct: 226 LCDHLDHKEALLTRLLSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAAR 285

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             +MD F  G  ++L+ T V   G+D+++ S++I  +   F    +H++ GR GR     
Sbjct: 286 NQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKG 344

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
             I L  P    N       L+ T   F I+
Sbjct: 345 DAISLVGPKDWDNFKKVQLFLRKT---FEIS 372


>gi|145727|gb|AAA23674.1| deaD [Escherichia coli]
          Length = 571

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 38  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 91

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 92  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 147

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW--GMRKNEAL--VRFLEAEDFD 263

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 264 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 315

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 316 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 374

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 375 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 429

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 430 TAE---GEELDLETLAAALLKMA 449


>gi|19113180|ref|NP_596388.1| ATP-dependent RNA helicase Dbp3 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|1723271|sp|Q10202|DBP3_SCHPO RecName: Full=ATP-dependent RNA helicase dbp3
 gi|3451298|emb|CAA20430.1| ATP-dependent RNA helicase Dbp3 (predicted) [Schizosaccharomyces
           pombe]
          Length = 578

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 82/370 (22%), Positives = 142/370 (38%), Gaps = 47/370 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------EAGGQAV 325
            PT  Q +    +L           +   + GSGKT+   I     +      ++  + +
Sbjct: 187 EPTPIQAATWPYLLAGRDV------VGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVL 240

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +++P   LA Q YE +    Q T +   ++ G  P++ + +A +      A +IIGT   
Sbjct: 241 VVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAK-----NASVIIGTPGR 295

Query: 386 FQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATA-------PHVLLMTATP 430
             D I        Q   L+L   D     G +Q ++     T           +  +AT 
Sbjct: 296 LLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATW 355

Query: 431 IPRTLVLTSLGDIDISKIT----EKPAGRKPIKTVII---PINRIDEVIERLKVVLSEGK 483
                 L +    D  KIT    E  A +   + V I   P ++   +   L+  LS G 
Sbjct: 356 PESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGG 415

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           K   I   +  KKE+       R         + + I HG MS   +   ++ FK+G C 
Sbjct: 416 KDDKILIFVLYKKEA------ARVEGTLARKYNVVGI-HGDMSQGARLQALNDFKSGKCP 468

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+D+    ++I           +H++ GR GR     + I  + P    +
Sbjct: 469 VLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRI-GRTGRANTKGTAITFFTPQDKSH 527

Query: 604 SYTRLSVLKN 613
           +   ++VL+ 
Sbjct: 528 AGELVNVLRQ 537


>gi|319941925|ref|ZP_08016246.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Sutterella wadsworthensis 3_1_45B]
 gi|319804578|gb|EFW01448.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Sutterella wadsworthensis 3_1_45B]
          Length = 503

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/409 (17%), Positives = 144/409 (35%), Gaps = 34/409 (8%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +  +        ++ +I   I R     PT  QE AI  +L           +     G+
Sbjct: 23  QDIRMSSFDQFGLDPRILSAIERMGYTQPTPIQEKAIPVVLMG------GDVMGAAQTGT 76

Query: 305 GKTLVALIAMAAAVEAGG-----------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           GKT    + + A +               +A+I+AP   LA Q  + + KY  +T +   
Sbjct: 77  GKTAGYGLPLIARILPKANTSMSPARHPVRALILAPTRELADQVSDNLVKYCADTPLRAG 136

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLK 413
           ++ G +    +   L R       I+  T     D +Q   + L  V E        R+ 
Sbjct: 137 VVYGGVDIRPQADMLRR----GVEILTATPGRLLDHVQQRSVNLSQV-EIVVLDEADRML 191

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                     +L       ++L+ ++    +I K+ +      P    +   N   E + 
Sbjct: 192 DMGFLPDISRILQLLPQHRQSLLFSATFSPEIKKLAKSFLKDNPTVIEVARENSTAETVT 251

Query: 474 RLKVVLSEGKKAYWICPQIEEKKES-----------NFRSVVERFNSLHEHFTSSIAIIH 522
           +    +++ +K   +   ++ +              N +    R     E    +   IH
Sbjct: 252 QELFAVNDREKTDVLIDMLKTRGPEGTPLTQVLVFVNAKITCRRLARTLERVGINADAIH 311

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G  +  +++  ++ FKNG   +L+AT V   G+D+ +   +I  +  +     +H++ GR
Sbjct: 312 GDKTQEERQVALEGFKNGAIHVLVATDVAARGLDIKELPFVINYDVPYSAEDYVHRI-GR 370

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEG 631
            GR        +L  P   +      ++ K T     I+     +R  G
Sbjct: 371 TGRAGAKGVATMLATPEDKRLVEAIEALTKQTFKPISISPMPRTRRGSG 419


>gi|237806841|ref|YP_002891281.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237499102|gb|ACQ91695.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 469

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 77/457 (16%), Positives = 167/457 (36%), Gaps = 58/457 (12%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +S  T  Q  ++  +LQ          + Q   GSGKT    + +   ++     
Sbjct: 28  LTALGYSEMTPIQAQSLPAVLQGKDV------LAQAKTGSGKTAAFALGLLQGLDVKSLN 81

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++ P   LA Q    I++  +    + V  + G MP   +  +LE+     AHI++
Sbjct: 82  VQGLVLCPTRELADQVAGEIRRLARLIPNVKVLTLCGGMPIGPQFSSLEQ----GAHIVV 137

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT    Q  +    L L      ++DE  R          ++               +TL
Sbjct: 138 GTPGRVQKHLDKESLSLAALKTWVLDEADRMLDMGFADAMREIAKV------CPRQRQTL 191

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    DI +++     R P+   +   +   ++ +R   + ++  K   +   ++  
Sbjct: 192 LFSATYPEDIQRLST-EFQRNPLSVRVESTHSAVQIEQRFFELPNQEAKFPALLKLLQHY 250

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +   ++          S   ++G +   +++ V+  F N +C +L+AT 
Sbjct: 251 QPRSTVIFCNMKHQTQQVADALSAQGYSALALNGDLEQRERDQVVVRFSNQSCAILVATD 310

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +   ++  +        +H++ GR GR  +    + L     +        
Sbjct: 311 VAARGLDIKELQAVVNYDLTPDPEIHVHRI-GRTGRAGQTGLALTLTTASQTNRVLQIED 369

Query: 610 V------------LKNTEDGFLIAEEDL-------KQRKEGEILG--IKQSGMPKFLIAQ 648
                        LK   D        L        + + G+ILG   K++G     I +
Sbjct: 370 YQQSQAVWGNLDELKKNPDNMKPEMVTLCLDGGRKSKVRPGDILGALTKEAGFNGQHIGK 429

Query: 649 PELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
             + +  + + +    A  +     D   ++G+ +R+
Sbjct: 430 INIAELHAYVAVHHSIANKVYGYLQD-GKIKGRKVRV 465


>gi|54297986|ref|YP_124355.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila str. Paris]
 gi|53751771|emb|CAH13194.1| hypothetical protein lpp2042 [Legionella pneumophila str. Paris]
          Length = 468

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 160/415 (38%), Gaps = 59/415 (14%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q  ++  IL++         I Q   GSGKT    + +   ++      QA+++ P 
Sbjct: 35  TPIQMQSLPIILRNED------IIAQAKTGSGKTAAFALCLLNNLKISFFAVQALVLCPT 88

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA+Q  + I++       + +  ++G +P   +  +L       AHII+GT       
Sbjct: 89  RELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLDSLRH----GAHIIVGTPGRILKH 144

Query: 390 IQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           ++   L L  V     DE  R          +       ++       +TL+ ++    +
Sbjct: 145 LKNASLDLSQVKALVLDEADRMLDMGFFDDIKN------IISVCPKQRQTLLFSATYPEE 198

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-------- 496
           I +++++         V+ P   ID  IE+    +S   + + +   +            
Sbjct: 199 IKRLSKQFMKDPKEVHVVTPPEEID--IEQHFYEVSRHAQKFPLLKSLLLHYRPVSVLIF 256

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +  +  VE  + L     S+IA+ +G M  ++++  +  F N +C +L+AT V   G+D
Sbjct: 257 CNTKQQTVEVTDQLINEGFSAIAL-NGDMEQVERDLAVLRFANQSCSILVATDVAARGLD 315

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN------------S 604
           + + S +I  +        +H++ GR GR       + +  P  ++              
Sbjct: 316 IKELSAVINFDLAFDHDVHIHRI-GRTGRAGSKGIALSIVTPADAQRICAIEDNYPHPIH 374

Query: 605 YTRLSVLKNTEDG--------FLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQP 649
           +  ++ L+N              IA     + + G+ILG   K +G+    I + 
Sbjct: 375 WGNINALENHNTACLVPEMVTLCIASGKKDKIRPGDILGALTKDAGLAGNTIGKI 429


>gi|17228718|ref|NP_485266.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
 gi|17130570|dbj|BAB73180.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
          Length = 513

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 132/348 (37%), Gaps = 32/348 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + F+ PT  Q  AI  +L           + Q   G+GKT    + +   ++     
Sbjct: 18  LEKLGFTAPTNIQAQAIPQLLSGRDV------VGQSQTGTGKTAAFSLPILERLDPQQKA 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q ++ + ++  N+ +    I G      +   L+R      HI++G
Sbjct: 72  VQAIVLTPTRELAIQVHDAMAQFVGNSGLRTLAIYGGQSIDRQMLQLKR----GVHIVVG 127

Query: 382 THALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D ++   L L  V     DE         +   +K      +L  A    +T +
Sbjct: 128 TPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEK------ILSQAPQDRQTAL 181

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     I  +  K        TV  P    +++ +   ++     KA  + P +E + 
Sbjct: 182 FSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEMED 241

Query: 497 ESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     R       S  +    S+   HG +S   +E ++  F++   + ++AT +
Sbjct: 242 PETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATDI 301

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+DV   S +I  +        +H++ GR GR  +  + I L  P
Sbjct: 302 AARGLDVDQLSHVINYDLPDSVETYVHRI-GRTGRAGKEGTAITLVQP 348


>gi|189499873|ref|YP_001959343.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189495314|gb|ACE03862.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
           BS1]
          Length = 418

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 130/356 (36%), Gaps = 27/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           SPT  Q  AI  IL+          +     G+GKT    I +   + A          +
Sbjct: 23  SPTPIQAQAIPMILEGRD------LLGCAQTGTGKTAAFAIPLLQLLHARKTNEKKKKIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA Q  +    Y ++T +  ++I G + Q  +  +L +       I++ T 
Sbjct: 77  ALVVTPTRELAMQIGDSFSAYGRHTGLTNQVIFGGVNQNPQTASLRK----GVDIVVATP 132

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    L L  V E        R+           +L       ++L  ++    
Sbjct: 133 GRLLDLMNQGHLHLRDV-EILVLDEADRMLDMGFIHDIRKILAALPQKKQSLFFSATMPT 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI--EEKKE---- 497
           +I ++      + P K  + P++   + I +    + +G K   +   +  EE K     
Sbjct: 192 EIVRLAGT-ILKNPAKVSVTPVSSTVDTIRQAVYFVDKGNKNRLLVHLLKGEEIKTALVF 250

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   ++     +        IHG      ++  + +FK  T ++L+AT +   GIDV
Sbjct: 251 TRTKHGADKVVKFLQKHAVRAEAIHGNKGQGARQRALKNFKEQTTRVLVATDIAARGIDV 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            D   +I  +  +     +H++ GR GR     + +        +       ++  
Sbjct: 311 DDLEHVINFDMSNVAETYVHRI-GRTGRAGAKGTALSFCDAGEKEYLRDVEKLIAK 365


>gi|296157319|ref|ZP_06840155.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295892655|gb|EFG72437.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 520

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 125/348 (35%), Gaps = 42/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   + +           
Sbjct: 23  TPTPIQTQAIPAVLNG------GDLLAGAQTGTGKTAGFTLPILQRLNSSPAVANGSGKR 76

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q  E ++ Y +  ++   ++ G +    +  AL         I++
Sbjct: 77  AVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRS----GVDIVV 132

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT- 429
            T     D +Q           L+L   D     G    +K  L +       LL +AT 
Sbjct: 133 ATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATF 192

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL    L    + ++  +    + +   I P++R  +      ++         +
Sbjct: 193 SDEIKTLADNLLDSPALIEVARRNTTAESVAQKIHPVDRDKKRELLTHLIKQHNWFQVLV 252

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +                L +   +S+AI HG  S   +   +  FK+GT ++L+AT
Sbjct: 253 FTRTKHGA-------NRLAEQLTKDGINSLAI-HGNKSQSARTRALAEFKDGTLQVLVAT 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            +   GID+     ++  +  +     +H++ GR GR       + L 
Sbjct: 305 DIAARGIDIDQLPHVVNYDLPNVPEDYVHRI-GRTGRAGATGEAVSLV 351


>gi|242005744|ref|XP_002423722.1| predicted protein [Pediculus humanus corporis]
 gi|212506907|gb|EEB10984.1| predicted protein [Pediculus humanus corporis]
          Length = 1130

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 138/387 (35%), Gaps = 50/387 (12%)

Query: 255  INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             +V   I + +  +   +PT  Q  AI  +L+          +     GSGKT   L+ +
Sbjct: 757  FHVSPNIVKNLENSGYNNPTPIQAQAIPAMLEGRQV------LACAPTGSGKTAAFLVPI 810

Query: 315  AAAVE----AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
               ++     G + VI+ P   LA+Q Y    + ++ T++ + II               
Sbjct: 811  FYHLKGPTKKGYRCVIVCPTRELARQTYRECLRLSEGTRLKINIIKKVTLDKENY----S 866

Query: 371  IAHGQAHIIIGTHALFQ-------DSIQYYKLILVIVDEQHRF------GVQQRLKLTQK 417
                +  I+I T              +    +  +IVDE  +       G + +L +   
Sbjct: 867  NTSKKFDILITTPNRLVYLLKQEPPKVNLKSVEWLIVDESDKLFEAGIRGFRDQLAVIYN 926

Query: 418  ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
            A    V+        +T  LT     ++  +            V+I +   +  +E +K 
Sbjct: 927  ACDSSVIKRAMFSATQTPHLTKWCRRNLKNL------------VLINVGVRNSAVETVKQ 974

Query: 478  VL----SEGKKAYWICPQIE---EKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSD 527
             L     E  K       I          F    ER   L         ++ +IH   + 
Sbjct: 975  ELLFVGCEAGKLVAFRNLINRGLTPPVLVFVQSKERAQELFNELVYDGINVDVIHSDRTQ 1034

Query: 528  IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
              +++V+ SF+ G   +LI T ++  GID    ++++  +     ++ +H++ GR GR  
Sbjct: 1035 KQRDNVIRSFREGKIWVLICTELMGRGIDFKGVNLVVNYDFPPSSVSYIHRI-GRTGRAG 1093

Query: 588  EISSCILLYHPPLSKNSYTRLSVLKNT 614
                 I  +    +  +      L++T
Sbjct: 1094 RPGRAITYFTQDDTHCANNEKCRLRST 1120


>gi|163741384|ref|ZP_02148775.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
 gi|161385118|gb|EDQ09496.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
          Length = 458

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 129/361 (35%), Gaps = 28/361 (7%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           +  + ++ PT  Q  AI   L           +     G+GKT    + + A +   G+ 
Sbjct: 33  IAELGYTDPTPIQARAIPHALNGQDV------LGLAQTGTGKTAAFGVPLIAQMMQYGRK 86

Query: 324 -------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                   +++AP   LA Q    +K  T+ T I   ++ G +    +   L R      
Sbjct: 87  PAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQISRLSR----GT 142

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I+I T     D +    L L   D        Q L L        +         +T++
Sbjct: 143 DILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKI-AALLPEQRQTML 201

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     +++I      + P++  + P  +  + I +    +++ +K   +   +   K
Sbjct: 202 FSATMPKQMNEIANSYL-QSPVRIEVNPPGKAADKITQSVHFIAKAEKLSLLKELLGAHK 260

Query: 497 ESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  +E+          S A IHG  S   +E  + SFK+G  K+L+AT V
Sbjct: 261 DERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVKILVATDV 320

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D   +      +   A +H++ GR  R  +    +    P            
Sbjct: 321 AARGLDIPDVKYVYNYELPNVPDAYVHRI-GRTARAGKDGQAVAFCAPDEMGELKAIQKT 379

Query: 611 L 611
           +
Sbjct: 380 M 380


>gi|50914526|ref|YP_060498.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
 gi|50903600|gb|AAT87315.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 539

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 125/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +       QA+++AP 
Sbjct: 25  SPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ +   + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   LIL  V        DE    G        +++       LL +AT P P + + + 
Sbjct: 135 KRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  +I  K      +    + +   ++     +++     +   +  +       
Sbjct: 195 FMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D+ 
Sbjct: 249 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR  +    I    P 
Sbjct: 307 GVTHVYNYDITQDPESYVHRI-GRTGRAGKSGESITFVSPN 346


>gi|319944884|ref|ZP_08019146.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
 gi|319741454|gb|EFV93879.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
          Length = 489

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/350 (16%), Positives = 124/350 (35%), Gaps = 29/350 (8%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ ++ PT  Q  AI  +L           +     G+GKT    + +   +      
Sbjct: 28  LADVGYTNPTPIQAKAIPVVLTGRD------LLAAAQTGTGKTAGFTLPILQRLLDNPMQ 81

Query: 323 -------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  + +I+ P   L  Q  E +K Y + T+I   +I G +    + +AL +     
Sbjct: 82  TRKPGRPRCLILTPTRELTAQVEESVKAYAKYTRIRSVLIFGGVSINPQIQALRQP---- 137

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             I++ T     D +Q   + L  V E        R+           ++       + L
Sbjct: 138 VDILVATPGRLLDHVQQGTVDLSGV-EIFVLDEADRMLDMGFIHDIRRVIAKLPAKRQNL 196

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I  +        P +  + P N   E++ +   ++ + +K   +   I  +
Sbjct: 197 LFSATFSPEIRSLAH-GLLDNPAEVDVAPRNTASELVAQSAHLVPKTRKRALLSYLIGSR 255

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +          +    R              IHG  S   +   +  FK+G+  +L+AT 
Sbjct: 256 RWKQVLVFTKTKHGANRLAEQLGKDGIEAMAIHGNKSQGARTRALSRFKDGSLPVLVATD 315

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +   G+D+ +   ++     +     +H++ GR GR     + + L    
Sbjct: 316 IAARGLDIDELPHVVNYELPNVPEDYVHRI-GRTGRAGHEGTAVSLVDRE 364


>gi|87310556|ref|ZP_01092685.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
 gi|87286777|gb|EAQ78682.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
          Length = 447

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 132/357 (36%), Gaps = 27/357 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--------GQ 323
           +PT  Q  AI  +L+          I     G+GKT    + +   ++           Q
Sbjct: 18  TPTPIQGQAIPHLLEG------SDLIGCAQTGTGKTAAFALPILNQLDLDRSRADACAPQ 71

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++++P   LA Q  +    Y +N +  +  I G + Q  + +AL+R      H+ I T 
Sbjct: 72  VLVLSPTRELAVQIAQSFNVYGRNVKFRLTTIFGGVGQNPQVRALKR----GVHVAIATP 127

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    + L    +        R+       A   ++       +T+  T+    
Sbjct: 128 GRLLDLMDQGYVDLSQA-KTFVLDEADRMLDMGFMPALKTIVSKLPKQRQTIFFTATMPP 186

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE------EKKE 497
            ++++        P++  + P +   E +E+  + +S+G K   +   ++          
Sbjct: 187 KVAQLAS-GLLNNPVRIEVAPESTTAERVEQRLMYVSQGDKRALLEHSLQAEGVGRTLVF 245

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   +R              IHG  +   +   ++SF++G  ++L+AT V   GIDV
Sbjct: 246 TKTKHGADRLAKELNASGIRTDAIHGNKTQNKRNRALESFRSGRLQVLVATDVAARGIDV 305

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
              + ++  +      + +H++ GR GR  +    +                +++ T
Sbjct: 306 DGVTHVVNFDLPIDPESYVHRI-GRTGRAGKEGIALSFCDFSEHGTLRAIERLIRTT 361


>gi|262392485|ref|YP_003284339.1| ATP-dependent RNA helicase DbpA [Vibrio sp. Ex25]
 gi|262336079|gb|ACY49874.1| ATP-dependent RNA helicase DbpA [Vibrio sp. Ex25]
          Length = 459

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 165/466 (35%), Gaps = 73/466 (15%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ ++  T  Q  ++  IL+          I QG  GSGKT    + + + +      
Sbjct: 19  LDSLNYTHMTPIQALSLPAILK------HRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 73  VQSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 128

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++  +        L+L   D     G Q  L           ++  A    
Sbjct: 129 GTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGFQDAL---------DAIIDAAPKQR 179

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I +I ++   + P    +   +    + +    V     +   +   +
Sbjct: 180 QTLLFSATFPEKIEQIAQR-IMQTPEVIKVESTHDTSSIAQHFYKVEGSEARDEALANLL 238

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              +        N +  V+           S+  IHG +   +++  +  F N +  +L+
Sbjct: 239 LTHQPESAVVFCNTKKEVQSVADELHRKGFSVIDIHGDLEQRERDQALVQFANKSVSILV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--------- 597
           AT V   G+DV +   +            +H++ GR GR          +          
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRI-GRTGRAGSKGLAFSFFGEKDGLRVAR 357

Query: 598 --------------PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG--IKQSGM 641
                         P  S     +  ++    DG        ++ + G+ILG    ++G+
Sbjct: 358 IEEYLEMDVVPATLPAKSNQQPYQAKMVTINIDGGKK-----QKVRPGDILGCLTGKNGI 412

Query: 642 PKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           P   + +  L    + + + +  AK  L    +   ++G+  R  L
Sbjct: 413 PGSQVGKIHLFPMRAYVAVEKSAAKKALQTISN-GKMKGRQFRARL 457


>gi|171059208|ref|YP_001791557.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170776653|gb|ACB34792.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 502

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 124/347 (35%), Gaps = 35/347 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
           +PT  Q   I   LQ +  +      +  + GSGKT   ++     V A           
Sbjct: 23  TPTDVQAQTIPPALQGLDLR------VCSNTGSGKTAAFVLPALQRVLAARNDPSKARAK 76

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQ 375
               G + +++AP   LA Q  +    Y Q+   + V  I G +P   +  AL +     
Sbjct: 77  GQVCGPRVLVLAPTRELAMQVSKAASTYGQHVAGLRVATIVGGVPYPAQLAALRKP---- 132

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             I+I T     D +   K +L  V E        R+           +  +     +T+
Sbjct: 133 LDILIATPGRLIDHLNSGKAVLGDV-EMLILDEADRMLDMGFIEDIERIAESLPQERQTV 191

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           ++++     + ++ ++       +  I       E IE+  +     +    +   +  +
Sbjct: 192 MVSATFAGQVGRLADQILKSDAKRIEITSHTDNHENIEQQLLWADSIEHKAKLLEHLLTE 251

Query: 496 KESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           +E          +   +   +       ++A +HG M    +   + + +NG  K+LIAT
Sbjct: 252 REMQQALVFTSTQRDADELAAHLYELGHAVAPLHGGMPQGRRSRTLMALRNGEIKVLIAT 311

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   GIDV   S +I           +H++ GR GR       I L
Sbjct: 312 DVAARGIDVPTISHVINFGLPMKAEDYVHRI-GRTGRAGRTGRAITL 357


>gi|170736938|ref|YP_001778198.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169819126|gb|ACA93708.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 483

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 134/377 (35%), Gaps = 45/377 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L           +     G+GKT    + +   +   G        +
Sbjct: 23  TPTPVQAKAIPVVLGGKDV------MAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +   +Y +   +      G +    +   L +       +++ T 
Sbjct: 77  VLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMKLRK----GVDVLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGV-----QQRLKLTQKATAPHVLLMTATPIPR 433
               D     ++Q+ ++  +++DE  R        +              LL +AT    
Sbjct: 133 GRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKRQTLLFSATFSDE 192

Query: 434 TLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              + +        I+  P       IK  ++P+++ ++      + +    +  W    
Sbjct: 193 IRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNK----PDLFMHLVAQNRWEHAL 248

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +        R+ V+    + E    ++  IHG      +   ++ FK G  ++L+AT V 
Sbjct: 249 V----FVKTRNGVDYLALMLEKAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D  ++I  +        +H++ GR GR       + L     +       +++
Sbjct: 305 ARGLDIDDLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALI 363

Query: 612 KNT-----EDGFLIAEE 623
           + T     E GF  AE 
Sbjct: 364 RQTLRREEEPGFE-AEH 379


>gi|304319730|ref|YP_003853373.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis
           HTCC2503]
 gi|303298633|gb|ADM08232.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis
           HTCC2503]
          Length = 460

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 147/378 (38%), Gaps = 41/378 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + ++ KI + +  +    PT  Q  AI + L+          +     G+GKT   ++ +
Sbjct: 19  LGLDTKILEALTESGYTHPTPIQADAIPEALRGRDV------LGIAQTGTGKTASFVLPV 72

Query: 315 AAAVEAGGQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
              +  G        ++I+AP   LA Q  E  +KY +N ++ + ++ G +  A +   L
Sbjct: 73  IHRLARGRARARMPRSLILAPTRELAAQVSEQFEKYGKNHKLSMALLIGGVSFADQDAKL 132

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHV 423
            R       ++I T     D  +  KL+L     ++VDE  R      +   ++      
Sbjct: 133 TR----GVDVLIATPGRLLDHHERGKLLLTGLEVMVVDEADRMLDMGFIPDLER------ 182

Query: 424 LLMTATPI-PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            +   TP   +TL  ++    +I ++T++     P +  +       + I +    L  G
Sbjct: 183 -IFKLTPFTRQTLFFSATMPPEIQRLTDQFL-SAPARIEVAKPATTAKTITQRIARLPSG 240

Query: 483 K---KAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           +   K   +   +E  +         N +  V+      +        IHG +    +  
Sbjct: 241 EDKLKRAALRHLVETAENLKNGIIFCNRKKNVDVIAKSLQEHGFDARPIHGDLPQSFRTE 300

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            +  F++G  KLL+A+ V   G+D+ D S +   +        +H++ GR GR   +   
Sbjct: 301 TLQMFRDGGLKLLVASDVAARGLDIPDVSHVFNFSVPINADDYVHRI-GRTGRAGRLGHA 359

Query: 593 ILLYHPPLSKNSYTRLSV 610
           ++L  P   K     L V
Sbjct: 360 VMLVTPDDGKAFDAVLKV 377


>gi|71898621|ref|ZP_00680791.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|71731568|gb|EAO33629.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
          Length = 446

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 132/375 (35%), Gaps = 36/375 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q+ AI   L           +     G+GKT    + +   + A          +A
Sbjct: 24  PTPIQQQAIPLALAGHD------LLAAAQTGTGKTAAFGLPVLQRLMAASSNVGAGKPRA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q ++ ++ Y +  ++   +I G +   ++   L R       ++I    
Sbjct: 78  LVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDVLRR----GVDLLIACPG 133

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D I+   + L  V         + L +    +   +L        +TL+ ++     
Sbjct: 134 RLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQNRQTLLFSATFAEP 193

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI------EEKKES 498
           I ++       +P + ++   N + E I      +   +K   +   +      +     
Sbjct: 194 IKQLA-LEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLYLLAQDSREQTLVFV 252

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +   ++  +  E +    A IHG  +   +   ++SFK G   +L+AT +   GID+ 
Sbjct: 253 RTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLVATDIAARGIDID 312

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
               +I  +        +H++ GR GR       I L     +K     + +L       
Sbjct: 313 QLPKVINYDLPMVAEDYVHRI-GRTGRNGVQGEAISLVTQEDAKLLRQIVRLL------- 364

Query: 619 LIAEEDLKQRKEGEI 633
              + D+  R   + 
Sbjct: 365 ---DRDMDIRDVPDF 376


>gi|226487070|emb|CAX75400.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
 gi|226487074|emb|CAX75402.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
 gi|226487078|emb|CAX75404.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
          Length = 768

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/363 (20%), Positives = 126/363 (34%), Gaps = 38/363 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q       L        ++ I Q   GSGKT   L+     + A        G   
Sbjct: 112 PTPIQSQGWPMAL----SGRDVVGIAQ--TGSGKTATFLLPAVIHIMAQPRLLRNEGPIC 165

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LAQQ     K++     +      G   +  +   L  +  G   I I T  
Sbjct: 166 LVLVPTRELAQQVLSVAKEFADAASLRAICFYGGSAKGTQ---LREMQKGG-EICIATPG 221

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP-- 432
              D I+  +        L+L   D     G   Q R  L+        L+ +AT     
Sbjct: 222 RLIDFIRVQRNLLSRVTYLVLDEADRMLDMGFEPQIRKILSHVRPDRQTLMWSATWPKEV 281

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL    L D     I        P  T I+ I   D   E+  + L            +
Sbjct: 282 QTLAREFLTDYIQVNIGSVSLHANPNITQIVEI-MDDWRKEQRLIELLSSFGRSRTLVFV 340

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E K     R   +  NSL       +  +HG     D+E  + SFK+G   +LIAT V  
Sbjct: 341 ETK-----RRTDQLTNSLRRRGFY-VEAMHGGKQQRDRELTLASFKSGRMNILIATDVAS 394

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ +   ++  +  +     +H++ GR  R ++  +    +    ++ +   + +L 
Sbjct: 395 RGLDIDNIEYVVNFDFPNQTEDYIHRI-GRTARSDKRGTAFTFFTYKNARQARDLIEILD 453

Query: 613 NTE 615
              
Sbjct: 454 EAN 456


>gi|160888241|ref|ZP_02069244.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492]
 gi|156862187|gb|EDO55618.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492]
          Length = 428

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 125/359 (34%), Gaps = 34/359 (9%)

Query: 271 FSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------Q 323
           F   T  QE +I  IL+          I     G+GKT   L+ +   +  GG       
Sbjct: 21  FEECTPIQEQSIPVILEGRD------LIAVAQTGTGKTAAYLLPILNKLSEGGHPADAIN 74

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++MAP   LAQQ  + ++ ++    +    + G        +    +  G A ++I T 
Sbjct: 75  CIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKRGLTLG-ADVVIATP 133

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
                      +   ++   I+DE  R      L +        ++        +T++ +
Sbjct: 134 GRLIAHLSLGYVDLSRVSYFILDEADRM-----LDMGFYDDIMQIVKFL-PKERQTIMFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I ++            V + +++  E I +   V  E +K   I     E+   
Sbjct: 188 ATMPAKIQQLAGNILNNPAE--VKLAVSKPAEKIVQAAYVCYENQKLGIIRSLFAEETPE 245

Query: 499 NF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  V+      +    ++  +H  +    +E VM  FK G   +L+AT ++ 
Sbjct: 246 RVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            GID+ D  ++I  +  H     +H++ GR  R       I         N       L
Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDYVHRI-GRTARANNDGVAITFVSEKEQGNFKNIEKFL 363


>gi|254249566|ref|ZP_04942886.1| Helicase [Burkholderia cenocepacia PC184]
 gi|124876067|gb|EAY66057.1| Helicase [Burkholderia cenocepacia PC184]
          Length = 505

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 134/377 (35%), Gaps = 45/377 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L           +     G+GKT    + +   +   G        +
Sbjct: 45  TPTPVQAKAIPVVLGGKDV------MAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRAR 98

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +   +Y +   +      G +    +   L +       +++ T 
Sbjct: 99  VLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMKLRK----GVDVLVATP 154

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGV-----QQRLKLTQKATAPHVLLMTATPIPR 433
               D     ++Q+ ++  +++DE  R        +              LL +AT    
Sbjct: 155 GRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKRQTLLFSATFSDE 214

Query: 434 TLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              + +        I+  P       IK  ++P+++ ++      + +    +  W    
Sbjct: 215 IRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNK----PDLFMHLVAQNRWEHAL 270

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +        R+ V+    + E    ++  IHG      +   ++ FK G  ++L+AT V 
Sbjct: 271 V----FVKTRNGVDYLALMLEKAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVA 326

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D  ++I  +        +H++ GR GR       + L     +       +++
Sbjct: 327 ARGLDIDDLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALI 385

Query: 612 KNT-----EDGFLIAEE 623
           + T     E GF  AE 
Sbjct: 386 RQTLRREEEPGFE-AEH 401


>gi|78776226|ref|YP_392541.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78496766|gb|ABB43306.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 398

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 130/343 (37%), Gaps = 36/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
            PT  Q+ AI  IL       +   +     G+GKT    + +   +           +A
Sbjct: 23  KPTPIQKQAIPIILS------KKDILAGAQTGTGKTAGFTLPLLELLSRDKSSTKKRIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +  Y +       II G +    +  AL +       I+I T  
Sbjct: 77  LILTPTRELAAQVGESVSIYGKYLSFTSTIIYGGVSINPQLSALRK----GVDIVIATPG 132

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I    +  +++DE  R      +   +K      +L       +TL+ ++
Sbjct: 133 RLLDHLSQKSIDLKDVEFLVLDEADRMLDMGFINDIKK------VLAVLPKNKQTLLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I K++++     P+   +   N+  + I+++   + + +K   +   I+E K   
Sbjct: 187 TYSDEIKKLSDRLLN-SPVLIEVERPNKTAQSIKQIVYPVDKERKRELLVHLIKEGKWQQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    + ++  E    S + IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VLVFTRTKHGANKLSAQLEKDGISSSAIHGNKSQNARMKALQEFKDGDIRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           GID+     +I     +     +H++ GR GR       I L 
Sbjct: 306 GIDIDQLPHVINYELPNVPEDYVHRI-GRTGRAGSSGDAISLV 347


>gi|321253117|ref|XP_003192635.1| hypothetical protein CGB_C1160C [Cryptococcus gattii WM276]
 gi|317459104|gb|ADV20848.1| hypothetical protein CNBC0850 [Cryptococcus gattii WM276]
          Length = 396

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 128/344 (37%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ AI  I++          I Q   G+GKT    I+M  +++      QA++++
Sbjct: 45  KPSAIQQRAIIPIIRGRDV------IAQAQSGTGKTATFSISMLQSIDTNLRETQALVLS 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + LE        ++ GT     D
Sbjct: 99  PTRELAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRKLEAGQ----QVVSGTPGRVFD 154

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        IL   DE    G + ++    +            P  + +V+++ 
Sbjct: 155 MIRRRNLRTKDIKMLILDESDELLNKGFKDQIYDIYRYLP---------PATQVVVVSAT 205

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+ ++T K     P++ ++       E I++  V +  E  K   +C   +      
Sbjct: 206 LPHDVLEMTTKFMT-DPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLTITQ 264

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++++M  F+ G  ++LI T V   
Sbjct: 265 AVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLITTDVWAR 324

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GIDV   S++I  +        LH++ GR GR       I    
Sbjct: 325 GIDVQQVSLVINYDLPTSRENYLHRI-GRSGRFGRKGVAINFVT 367


>gi|261856513|ref|YP_003263796.1| DEAD/DEAH box helicase [Halothiobacillus neapolitanus c2]
 gi|261836982|gb|ACX96749.1| DEAD/DEAH box helicase domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 594

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 135/349 (38%), Gaps = 36/349 (10%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
             + +  P+  Q  +I  +L+          +     G+GKT    + + + ++      
Sbjct: 23  EELGYESPSPIQAKSIPVLLEGKDV------LGMAQTGTGKTGAFALPLLSRIDINLRAP 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E ++ Y ++      + + G      + + L+R      H+++G
Sbjct: 77  QLLVLAPTRELAIQVAEAMQAYARHLPDFHVLPVYGGQAMEPQLRGLKR----GVHVVVG 132

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQR--LKLTQKATAPHVLLMTATPI 431
           T    QD I+   L L  +        DE  R G        L++      V L +AT  
Sbjct: 133 TPGRIQDHIKRGTLKLNQIQAVVLDEADEMLRMGFIDDVDEILSKTPANRQVALFSATMP 192

Query: 432 PRTLVLTSLGDIDISKITEKPAG--RKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            +   +      +  +I  K +    K I      ++ + ++    +++  E   A  I 
Sbjct: 193 DQIRRIAQRHLRNPVEIAIKSSTSTVKAINQRYWAVSGMHKLDALTRILEVEEFDAVIIF 252

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +        +  E    L     ++ + ++G M+   +E  +D  K G+  ++IAT 
Sbjct: 253 VRTK-------VATTELAEKLEARGYAA-SPLNGDMNQAMREKAIDRLKRGSLDIIIATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           V   GIDV   S ++  +      + +H++ GR GR       IL   P
Sbjct: 305 VAARGIDVARVSHVVNYDIPLDTESYVHRI-GRTGRAGRSGEAILFVAP 352


>gi|226501258|ref|NP_001151064.1| LOC100284697 [Zea mays]
 gi|194690824|gb|ACF79496.1| unknown [Zea mays]
 gi|195644024|gb|ACG41480.1| eukaryotic initiation factor 4A [Zea mays]
          Length = 410

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 131/348 (37%), Gaps = 43/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 59  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 112

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 113 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS----GVHVVVGTPGRVFD 168

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L   
Sbjct: 169 MLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEAL--- 225

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKE 497
                   +IT K    KP++ ++       E I++  V +  E  K   +C   E    
Sbjct: 226 --------EITRKFMN-KPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDLYETLAI 276

Query: 498 S------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +      N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++
Sbjct: 277 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 336

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             GIDV   S++I  +        LH++ GR GR       I      
Sbjct: 337 ARGIDVQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRD 383


>gi|330719371|ref|ZP_08313971.1| superfamily II DNA/RNA helicase [Leuconostoc fallax KCTC 3537]
          Length = 551

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 122/341 (35%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE  I   L           I Q   G+GKT    + +   ++      QA+I++P 
Sbjct: 25  TPIQEKTIPLTLVGKDV------IGQAQTGTGKTAAFGLPILEHIDLNNKNIQALIVSPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  + +KK  ++  + V+++ G      + + L+        I++GT     D  
Sbjct: 79  RELAIQTADELKKLGRDKHVDVQVVFGGADIRRQIQNLKS----HPQILVGTPGRLLDHT 134

Query: 391 QYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVL--T 438
                       L+L   DE    G        + +       LL +AT  P   ++   
Sbjct: 135 NRKTVKLDHVNTLVLDEADEMLNMGFLDDIEAIIEKTPATRQTLLFSATMPPAIKLIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  +I  K      +    + +   ++     ++   +  K   +  +       
Sbjct: 195 FMTNPEHIQIEAKELTTDLVDQYFVRVRENEKFDTMTRIFDVQAPKLAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  VE      E      A +HG ++   +  V+  FK+    +L+AT V   G+DV 
Sbjct: 249 --KRRVEELARGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILVATDVAARGLDVK 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           D S +   +      + +H++ GR GR       +    P 
Sbjct: 307 DVSHVYNFDIPQDPESYVHRI-GRTGRAGAEGVSVTFVAPN 346


>gi|301168896|emb|CBW28490.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
          Length = 613

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 133/364 (36%), Gaps = 36/364 (9%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+S I  +L           +     GSGKT    + + A +   E   
Sbjct: 21  SDLGFETPSPIQQSCIPHLLSG------NDVLGMAQTGSGKTAAFALPLLAQIDPSEKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  +++ +      +  + G      R     R     A +I+G
Sbjct: 75  QMLVMAPTRELAIQVADACEQFVKYAQGTRIVTLYGG----QRYDIQLRALKQGAQVIVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 131 TPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMP 190

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I      ++ + +    L+ +  E   A  I 
Sbjct: 191 EPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +NG+  +++AT 
Sbjct: 251 ARTKTGTLD--------ITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S+++  +      + +H++ GR GR       +L   P   +       
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEH 361

Query: 610 VLKN 613
           ++K 
Sbjct: 362 LMKK 365


>gi|239825779|ref|YP_002948403.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
 gi|239806072|gb|ACS23137.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
          Length = 466

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 75/343 (21%), Positives = 132/343 (38%), Gaps = 23/343 (6%)

Query: 266 LRNIPFSPT-KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           +R + F  T   Q   I   LQ+         I Q   G+GKT    I +   V+     
Sbjct: 17  IRRMGFEETTPIQAETIPLSLQNKDV------IGQAQTGTGKTAAFGIPLIEKVDVKNEA 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++AP   LA Q  E + K     ++ V  I G      + +AL++    + HII+G
Sbjct: 71  IQGLVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKK----RPHIIVG 126

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D I    L L  V         + L +        +L        +TL+ ++  
Sbjct: 127 TPGRIIDHINRKTLRLDNVHTVVLDEADEMLNMGFIDDIEAIL-SNVPEKRQTLLFSATM 185

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ES 498
              I +I E+    +P    +         I++  + + E KK   +   ++ +      
Sbjct: 186 PEPIRRIAERFMN-EPHIVKVKAKEMTVPNIQQYYLEVQEKKKFDILTRLLDIQAPELAI 244

Query: 499 NFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F     R + L E       +   IHG +S   + SV+  FK G+ ++L+AT V   G+
Sbjct: 245 VFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGL 304

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           D+   + +   +      + +H++ GR GR  +    +    P
Sbjct: 305 DISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKTGVAMTFVTP 346


>gi|89074347|ref|ZP_01160829.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89049834|gb|EAR55375.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 455

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 152/373 (40%), Gaps = 41/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           SPT  QE AI   L     KN M        G+GKT   ++ +   ++ G        +A
Sbjct: 23  SPTPIQEKAIPVALTG---KNLMAA---AQTGTGKTAGFVLPILQMLDDGTKVRAKRIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+AP   LA Q  + IK+Y+++  +    + G +    +++ L         I++ T  
Sbjct: 77  LILAPTRELAVQVEDNIKQYSKHLNLASMAMYGGVDYEPQKRRLIE----GVDILVATPG 132

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I +  +  +++DE  R      ++   K       ++   P+ R  +L S
Sbjct: 133 RLLDMYTKRAIHFDAIETLVLDEADRMLDMGFIEDINK-------IVERLPVDRQNMLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
               D  +   K A R PI+  +      D  I++  V + +  K+  +   I+E+K   
Sbjct: 186 ATLSDQVRFLAKTAVRNPIEISVAKDASADPKIDQWLVTVDKDMKSALLSSLIQEQKWDQ 245

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    +  +  E    S    H   S   +  +++ FKNG  + LIAT V   
Sbjct: 246 ALIFIETKHGAAKLVTQLEKRGISAESFHSGRSQAVRSQLLEDFKNGKLQYLIATGVASR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+   + ++  +        +H++ GR GR       I       S++++  L ++++
Sbjct: 306 GIDIEQLTRVVNYDLPFPPEEYVHRI-GRTGRAGASGEAISFV----SRDNFKNLCMIES 360

Query: 614 TEDGFLIAEEDLK 626
              G LI  ++++
Sbjct: 361 LL-GHLITRKEIE 372


>gi|319399568|gb|EFV87823.1| DEAD/DEAH box helicase family protein [Staphylococcus epidermidis
           FRI909]
          Length = 509

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 136/360 (37%), Gaps = 36/360 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + +  K  Q +       PT  Q+ +I   L+          + Q   G+GKT    I +
Sbjct: 7   LGISDKTVQTLEAMGFKEPTPIQKDSIPYALEG------DDILGQAQTGTGKTGAFGIPL 60

Query: 315 AAAV--EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
              V  + G Q++I+AP   LA Q  E ++++++  ++ V  + G MP   + KAL++  
Sbjct: 61  IEKVVGQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKK-- 118

Query: 373 HGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
                I++GT     D +          + LIL   DE    G    ++           
Sbjct: 119 --GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQ- 175

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                   +T++ ++     I ++ ++      I    +     D  I+    ++ E +K
Sbjct: 176 -------RQTMLFSATMPKAIQELVQQFMKAPKI-IKTMNNEMSDPQIDEYYTIVKELEK 227

Query: 485 AYWICPQIEEKK---ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
                  ++  +      F     R + L     S       +HG ++   +  V+  FK
Sbjct: 228 FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFK 287

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N    +L+AT V   G+D+   S +   +      +  H++ GR GR  +    +   +P
Sbjct: 288 NDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKEGIAVTFVNP 346


>gi|237713244|ref|ZP_04543725.1| ATP-dependent RNA helicase [Bacteroides sp. D1]
 gi|262406616|ref|ZP_06083165.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646166|ref|ZP_06723822.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294807864|ref|ZP_06766646.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229446711|gb|EEO52502.1| ATP-dependent RNA helicase [Bacteroides sp. D1]
 gi|262355319|gb|EEZ04410.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638495|gb|EFF56857.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294444926|gb|EFG13611.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 420

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 129/362 (35%), Gaps = 43/362 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE AI  IL+          I     G+GKT   L+ +   +  G         VIM
Sbjct: 25  TPIQEQAIPIILEGKD------LIAVAQTGTGKTAAFLLPVLNKLSEGKHPEDAINCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ ++    +    + G        +  + +  G A ++I T     
Sbjct: 79  SPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLTLG-ADVVIATPGRLI 137

Query: 388 DS-----IQYYKLILVIVDE---QHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVL 437
                  +   K+   I+DE       G  + +             ++ +AT   +   L
Sbjct: 138 AHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKERQTIMFSATMPAKIQQL 197

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +    + S+I              + +++  E I +   V  E +K   I     ++  
Sbjct: 198 ANTILNEPSEIK-------------LAVSKPAEKIIQAAYVCYENQKLGIIRSLFMDEVP 244

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +  V+      +    ++  +H  +    +E+VM  FK G   +L+AT ++
Sbjct: 245 ERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDIV 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ D  ++I  +  H     +H++ GR  R       +   +     N  +  + L
Sbjct: 305 ARGIDIDDIRLVINFDVPHDSEDYVHRI-GRTARANNDGVALTFINEKEQSNFKSIENFL 363

Query: 612 KN 613
           + 
Sbjct: 364 EK 365


>gi|255942831|ref|XP_002562184.1| Pc18g03460 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586917|emb|CAP94570.1| Pc18g03460 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 790

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 139/382 (36%), Gaps = 50/382 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q +AI   +Q          I     GSGKT   L+ +   +             
Sbjct: 379 DPTAIQRAAIPIAMQSRD------LIGVAVTGSGKTAAFLLPLLVYISALPRLDENEWRK 432

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G  A+++AP   LAQQ     KK+TQ     V  I G      +  +L       A I
Sbjct: 433 NEGPYAIVLAPTRELAQQIEIEAKKFTQPLGFNVVSIVGGHSLEEQAFSLRN----GAEI 488

Query: 379 IIGTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLTQKA-----------T 419
           II T     D I+   L+L           D     G ++ +     A            
Sbjct: 489 IIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEE 548

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
           A + + M+     +T++ T+     + +I  K   R  I T+      +D V +R++++ 
Sbjct: 549 AENSMAMSQHQYRQTMMYTATMPAAVERIARKYLRRPAIITIGGVGEAVDTVEQRVEMIS 608

Query: 480 SEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
            E K+   +   +             N +   +      +    S   +HG  +   +E+
Sbjct: 609 GEDKRKKRLAEILSSGDFRPPIIVFVNIKRNCDAIAREIKQMGFSSVTLHGSKTQDQREA 668

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            + S +NG+  +L+AT +   GIDV D S++I  N      +  H++ GR GR  +    
Sbjct: 669 ALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRI-GRTGRAGKSGVA 727

Query: 593 ILLYHPPLSKNSYTRLSVLKNT 614
           I       S   Y    +L  +
Sbjct: 728 ITFLGSEDSDVMYDLKQMLIKS 749


>gi|85708956|ref|ZP_01040022.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
 gi|85690490|gb|EAQ30493.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
          Length = 497

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 121/344 (35%), Gaps = 33/344 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q  AI  +L           I     G+GKT   ++ M   + AG       +++
Sbjct: 58  EPTAIQAEAIPAVL------MMKDLIGIAQTGTGKTASFVLPMIDVMAAGRRRALMPRSL 111

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  +KY  N  + + ++ G +    + K L+        ++I T   
Sbjct: 112 ILEPTRELAAQVAENFEKYGANHDLKMALLIGGVQMGDQLKTLDE----GVDVLIATPGR 167

Query: 386 FQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D  +  K++L      ++DE  R      +   +       +        +T++ ++ 
Sbjct: 168 LMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEF------ICDKLPETRQTMLFSAT 221

Query: 441 GDIDISKITEKPAGRKPIK--TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
               I K+ +K          T     N+     +       +     W+    + +   
Sbjct: 222 MPAPIEKLAKKFLSNPKRIETTRAATTNKDITAFKVPVKARQKRDTLEWLLANDQVETAI 281

Query: 499 NFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F +       L++H      +   IHG M    +   +D FK+G   +L+A+ V   G+
Sbjct: 282 IFANRKTTVRELNKHLQRQGFASGEIHGDMDQSSRLKELDRFKSGDVNILVASDVAARGL 341

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           D+   S +   +        +H++ GR GR         L    
Sbjct: 342 DIKGVSHVFNFDTPWHPDDYVHRI-GRTGRAGAKGRAFTLVADE 384


>gi|307249783|ref|ZP_07531761.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858198|gb|EFM90276.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 596

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 84/417 (20%), Positives = 150/417 (35%), Gaps = 40/417 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q+  I  +L           +     GSGKT    + + A ++      Q ++MA
Sbjct: 5   TPSPIQQETIPHLLAGRDV------LGMAQTGSGKTAAFSLPLLAQIDPTKRHPQMLVMA 58

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  +++T+N   + V  + G      R     R     + +++GT     
Sbjct: 59  PTRELAIQVADACEQFTKNMKGVNVVTVYGG----QRYDIQLRALKQGSQVVVGTPGRIL 114

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIP-RTL 435
           D I+   L        +L   DE  R G    ++  + +        L +AT P P R +
Sbjct: 115 DHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRI 174

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               + D    KI         I      +N   +    L+ +  E   A  I  + +  
Sbjct: 175 TRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTG 234

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                         L E      A ++G M+   +E  +D  K+G   +L+AT V   GI
Sbjct: 235 TID--------ITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGI 286

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+   S+++  +      + +H++ GR GR       +L   P   +       ++K   
Sbjct: 287 DIERISLVVNFDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPI 345

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE---IARKDAKHILTQ 669
           D   I   ++   K  E    + S   +      E +  LLE    A +D + +   
Sbjct: 346 DEVAIPNHEILMAKRREKFKARVS--KQLEHHDLEKYRELLEDLFTADQDHEELAAA 400


>gi|198243415|ref|YP_002215491.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937931|gb|ACH75264.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326623237|gb|EGE29582.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 457

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 137/358 (38%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVSLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKETVSLDAL-HILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   ++PI+  I  ++ +   IE+     S  +K   +   + + +    
Sbjct: 187 WPEAIAAISGR-VQQQPIRIEIDTVDALP-AIEQQFFETSAHEKISLLQTLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNYELAWDPEVHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQ 361


>gi|37525462|ref|NP_928806.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784890|emb|CAE13804.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 434

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 131/361 (36%), Gaps = 38/361 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q+ AI  +L           +     G+GKT    + M   +             
Sbjct: 29  APTPIQQQAIPVVLAGKD------LLASAQTGTGKTAGFTLPMLQRLNDSPIQMKGRRPV 82

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +   L     G   I++ T
Sbjct: 83  RALILTPTRELAAQVGENVRDYSKYLRLRSLVVFGGVSINPQMMKLR----GGVDILVAT 138

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D     ++   ++ ++++DE  R      +           +L    P  + L+ 
Sbjct: 139 PGRLLDLEHQNAVDLSRVEILVLDEADRMLDMGFIHDI------RRVLNKLPPKRQNLLF 192

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    DI  +  K   R P+   +   N   E IE+L   + + +K   +   I  +  
Sbjct: 193 SATFSDDIKSLASK-LLRDPVSVEVARRNSASEQIEQLVHFVDKKRKGELLSFLIGSRNW 251

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +    R          + + IHG  S   +   +  FK+G  ++L+AT + 
Sbjct: 252 QQVLVFTRTKHGANRLAEQLNKDGVTASAIHGNKSQGARTRALADFKDGRIRVLVATDIA 311

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     ++     +     +H++ GR GR +     + L      K       +L
Sbjct: 312 ARGLDIDQLPYVVNFELPNVAEDYVHRI-GRTGRADATGQALSLVCVDEHKLLKDIERLL 370

Query: 612 K 612
           K
Sbjct: 371 K 371


>gi|71275478|ref|ZP_00651764.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71900655|ref|ZP_00682780.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|170729397|ref|YP_001774830.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
 gi|71163778|gb|EAO13494.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71729590|gb|EAO31696.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|167964190|gb|ACA11200.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
          Length = 446

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 66/380 (17%), Positives = 133/380 (35%), Gaps = 46/380 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q+ AI   L           +     G+GKT    + +   + A          +A
Sbjct: 24  PTPIQQQAIPLALAGHD------LLAAAQTGTGKTAAFGLPVLQRLMAASSNVGAGKPRA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q ++ ++ Y +  ++   +I G +   ++   L R       ++I    
Sbjct: 78  LVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDVLRR----GVDLLIACPG 133

Query: 385 LFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D I+   + L  V     DE  R      L   +      +L        +TL+ ++
Sbjct: 134 RLIDHIERRSVDLSGVGILVLDEADRMLDMGFLHSIK-----RILGKLPRQNRQTLLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI------E 493
                I ++       +P + ++   N + E I      +   +K   +   +      +
Sbjct: 189 TFAEPIKQLA-LEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLYLLAQDSREQ 247

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   ++  +  E +    A IHG  +   +   ++SFK G   +L+AT +   
Sbjct: 248 TLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLVATDIAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     +I  +        +H++ GR GR       I L     +K     + +L  
Sbjct: 308 GIDIDQLPKVINYDLPMVAEDYVHRI-GRTGRNGVQGEAISLVTQEDAKLLRQIVRLL-- 364

Query: 614 TEDGFLIAEEDLKQRKEGEI 633
                   + D+  R   + 
Sbjct: 365 --------DRDMDIRDVPDF 376


>gi|320536466|ref|ZP_08036500.1| DEAD/DEAH box helicase [Treponema phagedenis F0421]
 gi|320146675|gb|EFW38257.1| DEAD/DEAH box helicase [Treponema phagedenis F0421]
          Length = 618

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/340 (18%), Positives = 124/340 (36%), Gaps = 21/340 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +PT  Q  AI  +L   +       I +   G+GKT    + +   + A     +A+++ 
Sbjct: 25  TPTPIQILAIPRLLSGETN-----IIAKARTGTGKTGAFGLPLIQELRADLGHPRALVLV 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I+ +   T   + ++ G    + + +AL++     A II+GT     D
Sbjct: 80  PTRELAMQVAAEIESFRIETYPRIAVVYGGSSMSEQLRALKK----GAEIIVGTPGRIID 135

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            I+   L L  + E         +      +    +   A    R L+ ++     I  I
Sbjct: 136 HIERGSLDLTQI-EYFILDEADEMLNMGFISDIETIFSKANSNARILMFSATMPKPILSI 194

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRS 502
                G   I    +    +  + E+    + E  K   +   I+   +         + 
Sbjct: 195 ASDFMGDYEIVAEELSEEPVS-LTEQFYWFVREEDKIEALIRLIDITPDFYGLVFCQTKL 253

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             +      E      A +HG +    +E ++  F++   + L+AT V   GID+   + 
Sbjct: 254 DADSVAKELEERGYEAAALHGDIPQNQREKILSRFRSKKIRTLVATDVAARGIDIEGITH 313

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++     + G    H++ GR GR     + +    P  S+
Sbjct: 314 VVNYAIPYDGPTYTHRI-GRTGRAGSTGTAVSFIRPNESR 352


>gi|307252129|ref|ZP_07534028.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860429|gb|EFM92443.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 596

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 84/417 (20%), Positives = 150/417 (35%), Gaps = 40/417 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q+  I  +L           +     GSGKT    + + A ++      Q ++MA
Sbjct: 5   TPSPIQQETIPHLLAGRDV------LGMAQTGSGKTAAFSLPLLAQIDPTKRHPQMLVMA 58

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  +++T+N   + V  + G      R     R     + +++GT     
Sbjct: 59  PTRELAIQVADACEQFTKNMKGVNVVTVYGG----QRYDIQLRALKQGSQVVVGTPGRIL 114

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIP-RTL 435
           D I+   L        +L   DE  R G    ++  + +        L +AT P P R +
Sbjct: 115 DHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRI 174

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               + D    KI         I      +N   +    L+ +  E   A  I  + +  
Sbjct: 175 TRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTG 234

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                         L E      A ++G M+   +E  +D  K+G   +L+AT V   GI
Sbjct: 235 TID--------ITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGI 286

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+   S+++  +      + +H++ GR GR       +L   P   +       ++K   
Sbjct: 287 DIERISLVVNFDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPI 345

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE---IARKDAKHILTQ 669
           D   I   ++   K  E    + S   +      E +  LLE    A +D + +   
Sbjct: 346 DEVAIPNHEILMAKRREKFKARVS--KQLEHHDLEKYRELLEDLFTADQDHEELAAA 400


>gi|89072882|ref|ZP_01159439.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34]
 gi|89051404|gb|EAR56859.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34]
          Length = 496

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 141/350 (40%), Gaps = 36/350 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
            P+  QE AI  IL           +     G+GKT    + +   +  G        +A
Sbjct: 23  KPSPIQEQAIPAILAGKDV------MAAAQTGTGKTAGFTLPLLERLANGRPARSNHVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +  Y++N ++   ++ G +    +   + R+  G A +++ T  
Sbjct: 77  LVLTPTRELAAQVGESVATYSKNLRLSSAVVFGGVKVNPQ---MLRMRKG-ADVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  + ++++DE  R      ++  +K       ++   P  R  +L S
Sbjct: 133 RLMDLHSQNAVKFRDVEILVLDEADRMLDMGFIRDIRK-------ILALLPKERQNLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +   K     P++  + P N+    +++    + + KK   +   + ++    
Sbjct: 186 ATFSDEIRELAKGLVSNPVEIDVNPRNQTARTVKQWICPVDQKKKPNLLTKLLNKRNWKQ 245

Query: 500 FRSVVER---FNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                +     N L  H  S   S A IHG  S   +   + +FK+G  ++L+AT +   
Sbjct: 246 VLVFTKTKHGANKLATHLESRGISAAAIHGNKSQGARTKALANFKSGDIRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           G+D+     ++  +  H     +H++ GR GR   +   I L     +K+
Sbjct: 306 GLDIEQLPQVVNFDLPHVAEDYVHRI-GRTGRAGCVGEAISLVSAEEAKD 354


>gi|325266846|ref|ZP_08133517.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
 gi|324981587|gb|EGC17228.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
          Length = 452

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 61/367 (16%), Positives = 132/367 (35%), Gaps = 46/367 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
            PT  QE+AI   L           +     G+GKT   ++     ++    A       
Sbjct: 24  QPTPIQEAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYANASASPAMH 77

Query: 325 ----VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               +++ P   LA Q  +  ++Y +N  +   ++ G +    +   L         I++
Sbjct: 78  PVRMLVLTPTRELADQIDQNTQRYIKNLPLRHTVLFGGVNMDKQTAQLRSGCE----IVV 133

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT- 429
            T     D ++   ++L  V        D     G     R  +         LL +AT 
Sbjct: 134 ATVGRLLDHVKQKNIVLNKVEIVVLDEADRMLDMGFIDDIRNIMQMLPRPRQTLLFSATF 193

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  R L    +   ++ ++  +      ++  +I ++   +     ++++  G +   +
Sbjct: 194 APAIRKLAQDFMHSPEVVEVAAQNTTNANVEQHVIAVDTHRKRDLLERLIVDLGMQQVIV 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + ++  +   R +  R          S++ IHG  S   +  V+  FK G+ ++L+AT
Sbjct: 254 FCKTKQSADQVARDLARR--------GLSVSAIHGDKSQQTRLDVLSQFKAGSLRVLVAT 305

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   ++           +H++ GR GR       I +    + ++     
Sbjct: 306 DVAARGLDIAELPFVVNYEMPVQAEDYVHRI-GRTGRAGADGVAISM----MDESEQKMY 360

Query: 609 SVLKNTE 615
             +K   
Sbjct: 361 DAIKALT 367


>gi|294947712|ref|XP_002785456.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
 gi|239899367|gb|EER17252.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
          Length = 695

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 65/372 (17%), Positives = 137/372 (36%), Gaps = 42/372 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------- 323
           PT  Q+ +I  +        R   +     GSGKT   LI     + A G          
Sbjct: 230 PTPVQKYSIPTL------TTRRDLMSCAQTGSGKTGAYLIPAIHNMLADGPPDATSSGDY 283

Query: 324 --------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                    +I++P   LA Q +E  +K+  NT I   ++ G      + + LER     
Sbjct: 284 GRRKAYPITLILSPTRELASQIHEEARKFCFNTGIRPVVVYGGADVRTQLRELER----G 339

Query: 376 AHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
             I++ T     D ++ +++ L  +     DE  R           +       + ++  
Sbjct: 340 CDILVATPGRLSDLMERFRVSLCQIKMLIFDEADRMLDMGFEPQI-RRIVEQEDMPSSRD 398

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             ++ + ++    +I ++           T +  +      I+++   + E  K   +  
Sbjct: 399 GRQSAMFSATFPREIQQLARDFLKDYIYLT-VGRVGSTHGSIKQIMRYVDENSKLRDLYR 457

Query: 491 QIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            +EE+ E          +   +   ++          IHG  S  ++E  + +FK+G   
Sbjct: 458 VLEEQTEEGLTLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWEREEALKAFKSGELP 517

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+D+   +++I  +  +     +H++ GR GR   + + I   +      
Sbjct: 518 ILVATDVAARGLDISHVNLVINYDLPNNIDDYVHRI-GRTGRAGNLGTAIAFVNEGSKPI 576

Query: 604 SYTRLSVLKNTE 615
                ++L+  +
Sbjct: 577 LRDLWTLLEENK 588


>gi|315182608|gb|ADT89521.1| DEAD-box ATP dependent DNA helicase [Vibrio furnissii NCTC 11218]
          Length = 412

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 123/333 (36%), Gaps = 22/333 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--AVIMAP 329
            PT  Q  AI ++L           +   + GSGKTL   + +   +    Q  A+I+ P
Sbjct: 22  QPTDIQALAIPELLAGKDV------LALANTGSGKTLAYALPLLDKLNENPQQKALILVP 75

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I +  Q  ++    + G + +A +++AL        HI + T     D 
Sbjct: 76  TRELAIQVSEAINQVGQAFELNAVCLCGGVDKALQQQALAT----NPHIFVATTGRLVDL 131

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +  + L L  +         + L +       ++ + TA    R   + S    +  K  
Sbjct: 132 VN-HGLDLSHIHTLVLDEADRLLDMGFWPDVQNIAMQTAN--QRQTAMFSATFSEALKEK 188

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------RSV 503
            K     P +      N  ++ I     ++++G K   +   I++   +        +  
Sbjct: 189 AKQLMHAPKQVAAHQENSTNQDITETLFLVNKGSKTKALIELIQQNAWTRVLVFIGAKEN 248

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +           S   +HG  S  ++E  +  FK+G   +LIAT ++  GI +    ++
Sbjct: 249 ADGLAKKLNKAGVSTTALHGNKSQDEREQALAQFKSGQVNVLIATDLLARGIHIEQLPVV 308

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           I           +H++ GR  R  E    + L 
Sbjct: 309 INFELPMHAETYVHRV-GRTARAGEQGVAMSLV 340


>gi|256811339|ref|YP_003128708.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
           AG86]
 gi|256794539|gb|ACV25208.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
           AG86]
          Length = 362

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 72/341 (21%), Positives = 135/341 (39%), Gaps = 40/341 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAP 329
            PT  Q   +   L           + Q   GSGKT    I +   ++  +G +A+I+ P
Sbjct: 23  KPTDIQMKVVPLFLN-----ESCNIVAQARTGSGKTASFAIPLIELIDEDSGIEAIILTP 77

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I     N  + +  + G      + KAL+     +A+I++GT     D 
Sbjct: 78  TRELAIQVADEIDSLKGNKNLKITKVYGGKAIHPQIKALK-----KANIVVGTPGRVLDH 132

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           I    L L  V        DE    G  + ++    A   +          R L+ ++  
Sbjct: 133 INRGTLNLKNVKYFILDEADEMLNMGFIEDVEKILNACNKN---------KRILLFSATM 183

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---- 497
             +I  + +K  G            +I+  IE+  + ++E ++   +C  +++++     
Sbjct: 184 PKEILNLAKKYMGDYEFV-----KAKINANIEQSYIEINENERFETLCRILKDREFYGLV 238

Query: 498 -SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   +   ++          IHG ++   +E V+  FK    K+LIAT V+  GID
Sbjct: 239 FCKTKKDTKDLANMLRDIGFKAGAIHGDLNQSQREKVIRLFKQKKIKILIATDVMSRGID 298

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V D + +I  +      + +H++ GR GR  +    I + +
Sbjct: 299 VNDLNCVINYHLPQNPESYMHRI-GRTGRAGKKGMAISIIN 338


>gi|224370329|ref|YP_002604493.1| predicted ATP-dependent RNA helicase [Desulfobacterium
           autotrophicum HRM2]
 gi|223693046|gb|ACN16329.1| predicted ATP-dependent RNA helicase [Desulfobacterium
           autotrophicum HRM2]
          Length = 411

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 128/343 (37%), Gaps = 27/343 (7%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           L  + F  PT  Q  AI  IL+          +     G+GKT    I +   + +    
Sbjct: 16  LAALGFVRPTDIQFKAIPSILKGEDV------LAIAQTGTGKTAAFAIPVIDRIHSYKTS 69

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G + ++M P   LA+Q        +++T++    + G +    + + ++R+  G  
Sbjct: 70  KRTRGIRCLVMVPTRELAEQIGGVFDTLSRHTKVKTFALYGGV---EQDRQIKRLQDG-I 125

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I+I T     D I    + L  V+          L L       HV         +TL 
Sbjct: 126 DILIATPGRMFDLISQGHINLDNVNTLVLDEADHMLDLGFITDIHHV-KQKLVKRHQTLF 184

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++  +  I K+         I+  I P + + + +    + +    K +++   I+E  
Sbjct: 185 FSATINQKIKKLAFSQVKTTAIRIQISPDDPVSKNVSHFVMFVEMDDKRFFLENFIKENP 244

Query: 497 ESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +        R   ER     E      + IHG      +  VM  FKN    +LIAT V
Sbjct: 245 SAKIIVFVRTRVRAERVAKAMERVGIETSTIHGEKDQTLRSLVMQRFKNNEISILIATDV 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
              GID+ +   +I  +        +H++ GR GRG +  S I
Sbjct: 305 SARGIDIPNVDFVINYDLPDQAENYVHRV-GRTGRGVKKGSAI 346


>gi|157374733|ref|YP_001473333.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157317107|gb|ABV36205.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 465

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 86/399 (21%), Positives = 141/399 (35%), Gaps = 43/399 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ ++ + +       PT+ Q+ AI      +S K+ M        GSGKTL  L+  
Sbjct: 25  FSLDTRLLKTLDHMGIEKPTEIQQQAIPV---GLSGKDLM---ASSKTGSGKTLAFLLPA 78

Query: 315 AAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              +       +   + +I+ P   LA Q Y  ++    NTQ     I G      + K+
Sbjct: 79  MQRIISTRALSKRDPRVLILLPTRELANQVYSQLRLLVANTQYKAVKILGGENFNDQAKS 138

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKAT 419
           LER      H ++ T     D +  + L        IL   D     G   +LK    A 
Sbjct: 139 LER----DPHFVVATPGRLADHLAQHHLHLNGLELLILDEADRMLDLGFVDQLKAINAAA 194

Query: 420 AP---HVLLMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  L+ +AT        +    L D     I         I   I   + +D    
Sbjct: 195 DHKRRQTLMFSATLDHNKINEIAAELLKDPMHVSIGAGNIENLDITQRIYLSDHLDHKEA 254

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L  +L   K    I            R   +R  +       + A + G +    +  +
Sbjct: 255 LLNHILKNEKNKQVIIFT-------ATRQDTDRLATKLAEAGFNTASLSGDLKQNARNQI 307

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           MD F  G   +L+ T V   G+D+++ S++I  +   F    +H++ GR GR       I
Sbjct: 308 MDQFSRGLQDILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDAI 366

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEED-LKQRKEG 631
            L  P    N       L+ T   F I+  D L+ +  G
Sbjct: 367 SLVGPKDWVNFKQVQVFLRKT---FEISTIDGLEAKFSG 402


>gi|161579561|ref|NP_931687.2| ATP-dependent RNA helicase DeaD [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 639

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 137/366 (37%), Gaps = 36/366 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q+  I  +L           +     GSGKT    + +   + A    
Sbjct: 22  LEDLGYEKPSPIQQQCIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLHNINAELKA 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    ++++ + + V  + G      R     R       I++
Sbjct: 76  PQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGG----QRYDVQLRALRQGPQIVV 131

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   ++Q        L +AT 
Sbjct: 132 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATM 191

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + D    +I      R  I      +  + +    ++ + +E   A  I
Sbjct: 192 PEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAII 251

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +LIAT
Sbjct: 252 FVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDILIAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 304 DVAARGLDVERISLVVNYDIPMDAESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNVE 362

Query: 609 SVLKNT 614
             +K T
Sbjct: 363 RTMKLT 368


>gi|109071704|ref|XP_001112413.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Macaca
           mulatta]
          Length = 648

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 126/365 (34%), Gaps = 39/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  A   +LQ +        I     G+GKTL  L+     ++            
Sbjct: 264 KPTPIQSQAWPIVLQGID------LIGVAQTGTGKTLCYLMPGFIHLDLQPTLKGQRNRP 317

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++ P   LA Q      KY+    +    + G   +  + + L +       III T
Sbjct: 318 GMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIEELRK----GVDIIIAT 372

Query: 383 HALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      +    +  +++DE  +           K      +L+   P  +T++ 
Sbjct: 373 PGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMK------ILLDVRPDRQTVMT 426

Query: 438 TSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           ++     + ++ +       I  V    ++ ++ + + I              ++     
Sbjct: 427 SATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMHTFLQNMSS 486

Query: 494 EKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             K   F S     + L         SI  +HG     D+E  +++FK G  ++LIAT +
Sbjct: 487 TDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVRILIATDL 546

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D + +   +        +H++ GR GR       I        + +   +++
Sbjct: 547 ASRGLDVHDVTHVYNFDFPRNIEEYVHRI-GRTGRAGRTGVSITTLTRNDWRVASELINI 605

Query: 611 LKNTE 615
           L+   
Sbjct: 606 LERAN 610


>gi|296807019|ref|XP_002844169.1| ATP-dependent RNA helicase DED1 [Arthroderma otae CBS 113480]
 gi|238843652|gb|EEQ33314.1| ATP-dependent RNA helicase DED1 [Arthroderma otae CBS 113480]
          Length = 680

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 134/374 (35%), Gaps = 47/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----------EAGG 322
           PT  Q+ +I  +   M  ++ M        GSGKT   L  + +            + GG
Sbjct: 220 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQAFQNGPSPAPTQQGG 273

Query: 323 Q------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           Q            ++I+AP   L  Q Y+  +K+   + +   ++ G      + + +ER
Sbjct: 274 QFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIER 333

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLL 425
                  +++ T     D I+  ++ L  +     DE  R          ++      + 
Sbjct: 334 ----GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMP 389

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
             A    +TL+ ++    DI  +  +   +  +   +  +    E I +    + +  K 
Sbjct: 390 PVAG--RQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEYVEDADKR 446

Query: 486 YWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             +   +              + + +  +    +       IHG  +  ++E  ++ F+N
Sbjct: 447 SVLLDILHTHGAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRN 506

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G C +L+AT V   G+D+ + + ++  +        +H++ GR GR          ++  
Sbjct: 507 GRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI-GRTGRAGNTGISTAFFNRG 565

Query: 600 LSKNSYTRLSVLKN 613
                   + +LK 
Sbjct: 566 NRGVVRDLIELLKE 579


>gi|311747453|ref|ZP_07721238.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
 gi|126574812|gb|EAZ79183.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
          Length = 580

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 75/359 (20%), Positives = 133/359 (37%), Gaps = 35/359 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + +  +I + +       P++ Q  AI  +L           I Q   G+GKT    I +
Sbjct: 10  LGISSEILKSVEEMGYTQPSQIQSQAIPFVLDGRDV------IGQAQTGTGKTAAFGIPI 63

Query: 315 AAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALER 370
              V+      QAVI+ P   LA Q    I+K  +   +I    I G      + + L +
Sbjct: 64  IDLVDPDFNKVQAVILCPTRELAVQVEGEIQKLAKYHRKINSVAIYGGESIDRQIRVLRK 123

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATA 420
                  I++GT    QD I    L        +L   DE    G +  +   L +    
Sbjct: 124 ----GVQIVVGTPGRVQDHINRGTLKLENTGIIVLDEADEMLDMGFRDDIEAILQEMPEK 179

Query: 421 PHVLLMTATPIPRTLVLT--SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
              +  +AT     L LT     + +I K+ +K      I+ V   + +    +E +  +
Sbjct: 180 RQTVFFSATMAKPILDLTRKYQNNPEIIKVAKKELTVDRIEQVFYEV-KPSLKLELMARL 238

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           ++    A  +          N + + +               +HG +S   ++ VM+ F+
Sbjct: 239 MNVNNYALSVVF-------CNTKRMTDEATEALGSRGILAEALHGDLSQAQRDKVMNKFR 291

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            G C +L+AT V   GIDV +   +   +      + +H++ GR GR  +    I    
Sbjct: 292 KGLCTVLVATDVAARGIDVDNVEAVFNFDLPLDDESYVHRI-GRTGRAGKSGKAINFVT 349


>gi|71908923|ref|YP_286510.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71848544|gb|AAZ48040.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 507

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 129/343 (37%), Gaps = 30/343 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----------EA 320
            PT  Q  AI  ++     K+ M        G+GKT    + +   +           + 
Sbjct: 45  KPTPIQAQAIPLVISG---KDIMGG---AQTGTGKTAAFTLPILQRILPFASSSPSPAKH 98

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+AP   LA Q +E +K Y+++T I      G +    +   L++       I++
Sbjct: 99  PVRALILAPTRELAMQVFESVKTYSKHTPIRAMCAYGGVDIRPQIAELKK----GVEILV 154

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D ++   +    V         + L +        +L M      ++L+ ++ 
Sbjct: 155 ATPGRLLDHVENKSVSFNSVQALVLDEADRMLDMGFVPDVTRILNMLPAQ-RQSLLFSAT 213

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
              +I K+ +    + PI   +   N++ + I      +SE  K   +   ++  +    
Sbjct: 214 FSEEIKKLADT-MLKSPILIEVARRNQVSDTITHRVHPVSEYGKRGLLTKLLKSGEIRQC 272

Query: 501 ------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +    R     +        IHG  S +++   +++FK G    LIAT V   G
Sbjct: 273 IVFCRTKQGCSRLTRELQRAGIKADAIHGDKSQLERIKALEAFKGGETDALIATDVAARG 332

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +DV D   +I     H     +H++ GR GR  +  + I L  
Sbjct: 333 LDVDDLPYVINYELPHTPEDYVHRI-GRTGRAGKKGNAISLVS 374


>gi|237731652|ref|ZP_04562133.1| ATP-dependent RNA helicase DbpA [Citrobacter sp. 30_2]
 gi|226907191|gb|EEH93109.1| ATP-dependent RNA helicase DbpA [Citrobacter sp. 30_2]
          Length = 457

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 135/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLEMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQHIDAALFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   + P+   I  ++ +   IE+     S   K   +   + + +    
Sbjct: 187 WPEAIAAISGR-VQQNPLTIEIDTVDALP-AIEQQFFETSSHGKIPLLQKLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANILSEMLQ 361


>gi|323700588|ref|ZP_08112500.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132]
 gi|323460520|gb|EGB16385.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 551

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 137/369 (37%), Gaps = 42/369 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +PT  Q   I  +L           + Q   G+GKT    + +  A E G    Q++I+A
Sbjct: 24  APTPIQALTIPRLLSG-----TRDIVGQAQTGTGKTAAFGLPVIEAAEEGARRVQSLILA 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I       +I V  + G      + KAL +       +++GT     D
Sbjct: 79  PTRELAIQVAEEIDSLKGGKRIRVLPVYGGQAIHMQLKALRQ----GVDVVVGTPGRIMD 134

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            ++   L        IL   DE    G    +           +L +A    RTL+ ++ 
Sbjct: 135 HLERGSLRIDQLTYFILDEADEMCNMGFVDDV---------RAILASANADRRTLMFSAT 185

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
              ++  I  +  G   +   + P      +  ++   +++  +   +C  I+ + +   
Sbjct: 186 MGGEVMAIAREFMGDFDV-VRVKPEVSDAPLTRQVFHEIADSDRFEALCRVIDARPDFYG 244

Query: 500 -----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R+  +   +           IHG ++   +E ++  F+     +L+AT V   G
Sbjct: 245 LVFVRTRADADLVAARLTQRGYPAEPIHGDLNQAQREKILSGFRERKATILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV D + ++           +H+  GR GR  +    I L  P         + + K+T
Sbjct: 305 IDVPDLTHVVNFALPQDPQTFVHR-TGRTGRAGKQGVAITLITP---NEFRKLMYIAKST 360

Query: 615 EDGFLIAEE 623
             G  IA+E
Sbjct: 361 --GIDIAKE 367


>gi|319896568|ref|YP_004134761.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
 gi|317432070|emb|CBY80420.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
          Length = 613

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 84/437 (19%), Positives = 159/437 (36%), Gaps = 49/437 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+S I  +L           +     GSGKT    + + A +   E   
Sbjct: 21  SDLGFETPSPIQQSCIPHLLSG------NDVLGMAQTGSGKTAAFALPLLAQIDPSEKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  + + +      +  + G      R     R     A +++G
Sbjct: 75  QMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGG----QRYDIQLRALKQGAQVVVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 131 TPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMP 190

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I      ++ + +    L+ +  E   A  I 
Sbjct: 191 EPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +N +  +++AT 
Sbjct: 251 ARTKTGTLD--------ITELLEKNGFRSAALNGDMTQQLREQTLDRLRNRSLDIVVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S+++  +      + +H++ GR GR       +L   P   +       
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEH 361

Query: 610 VLKNTEDGFLIAEEDL--KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           ++K   +   +   ++  + R++  +  I +         Q E HD  LE  R   + + 
Sbjct: 362 LMKKGINEVELPNHEVLQECRRKKFVAKITK---------QLEHHD--LEQYRSLLEDLF 410

Query: 668 TQDPDLTSVRGQSIRIL 684
           T D D  ++    + +L
Sbjct: 411 TADQDQENIAAAMLMLL 427


>gi|94992721|ref|YP_600820.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
 gi|94546229|gb|ABF36276.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
          Length = 416

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 125/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +       QA+++AP 
Sbjct: 25  SPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ +   + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   LIL  V        DE    G        +++       LL +AT P P + + + 
Sbjct: 135 KRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  +I  K      +    + +   ++     +++     +   +  +       
Sbjct: 195 FMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D+ 
Sbjct: 249 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR  +    I    P 
Sbjct: 307 GVTHVYNYDITQDPESYVHRI-GRTGRAGKSGESITFVSPN 346


>gi|89901799|ref|YP_524270.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89346536|gb|ABD70739.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 506

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 122/351 (34%), Gaps = 42/351 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
           + T  Q  AI  +LQ          +     G+GKT    + +   +             
Sbjct: 37  TMTPIQAQAIPVVLQGRDV------MGAAQTGTGKTAAFALPLLQRMLKHENSSTSPARH 90

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   LA Q  + IK Y  +T +   ++ G M    +   L++       +++
Sbjct: 91  PVRALVLLPTRELADQVAQAIKDYAVHTNLRSAVVFGGMDMKPQTLELKK----GVEVLV 146

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFG-----VQQRLKLTQKATAPHVLLMTATP 430
            T     D I+    +L  V     DE  R          +  L+        LL +AT 
Sbjct: 147 ATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRITLLFSATF 206

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
                 L  + L D    ++    A    ++     ++  D+     +++ S G K  ++
Sbjct: 207 SSEIKRLASSYLQDPVTIEVARSNAAASTVEQHFYSVDADDKRHALHQILKSRGMKQAFV 266

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     EH       +HG  S  ++   +++FK+G   LL+ T
Sbjct: 267 FV--------NSKLGCARLARSLEHEGLKTTALHGDKSQDERLKALEAFKSGEVDLLVCT 318

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            V   G+D+ D   +   +        +H++ GR GR       +      
Sbjct: 319 DVAARGLDIKDVPAVFNFDIPFNAEDYVHRI-GRTGRAGAAGLAVSFVAKS 368


>gi|63139086|gb|AAY33860.1| eukaryotic initiation factor 4A [Pennisetum glaucum]
          Length = 414

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 127/353 (35%), Gaps = 33/353 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 63  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 116

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 117 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS----GVHVVVGTPGRVFD 172

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 173 MLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEIT 232

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + + + D  ++ L          Y      +   
Sbjct: 233 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTL-------CDLYETLAITQSVI 285

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 286 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 345

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   S++I  +        LH++ GR GR       I        +  +    
Sbjct: 346 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRDDDRMQFDIQR 397


>gi|51594838|ref|YP_069029.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis IP
           32953]
 gi|108808981|ref|YP_652897.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Antiqua]
 gi|108810764|ref|YP_646531.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Nepal516]
 gi|145600551|ref|YP_001164627.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Pestoides F]
 gi|153947592|ref|YP_001402544.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis IP
           31758]
 gi|153997472|ref|ZP_02022572.1| cold-shock dead-box protein A [Yersinia pestis CA88-4125]
 gi|161484874|ref|NP_668033.2| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM 10]
 gi|161511438|ref|NP_991988.2| ATP-dependent RNA helicase DeaD [Yersinia pestis biovar Microtus
           str. 91001]
 gi|162420533|ref|YP_001608294.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Angola]
 gi|165925696|ref|ZP_02221528.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936744|ref|ZP_02225311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010049|ref|ZP_02230947.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214269|ref|ZP_02240304.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167398750|ref|ZP_02304274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420623|ref|ZP_02312376.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423076|ref|ZP_02314829.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186893847|ref|YP_001870959.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis PB1/+]
 gi|218930502|ref|YP_002348377.1| ATP-dependent RNA helicase DeaD [Yersinia pestis CO92]
 gi|229839140|ref|ZP_04459299.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229896629|ref|ZP_04511796.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229899704|ref|ZP_04514845.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900962|ref|ZP_04516086.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|270489144|ref|ZP_06206218.1| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM D27]
 gi|294505188|ref|YP_003569250.1| cold-shock dead-box protein A [Yersinia pestis Z176003]
 gi|51588120|emb|CAH19726.1| cold-shock dead-box protein A [Yersinia pseudotuberculosis IP
           32953]
 gi|108774412|gb|ABG16931.1| cold-shock dead-box protein A [Yersinia pestis Nepal516]
 gi|108780894|gb|ABG14952.1| cold-shock dead-box protein A [Yersinia pestis Antiqua]
 gi|115349113|emb|CAL22076.1| cold-shock dead-box protein A [Yersinia pestis CO92]
 gi|145212247|gb|ABP41654.1| cold-shock dead-box protein A [Yersinia pestis Pestoides F]
 gi|149289109|gb|EDM39189.1| cold-shock dead-box protein A [Yersinia pestis CA88-4125]
 gi|152959087|gb|ABS46548.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353348|gb|ABX87296.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           Angola]
 gi|165915393|gb|EDR34003.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922308|gb|EDR39485.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990956|gb|EDR43257.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204501|gb|EDR48981.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961429|gb|EDR57450.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167051254|gb|EDR62662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057246|gb|EDR66992.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186696873|gb|ACC87502.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682301|gb|EEO78393.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229687196|gb|EEO79271.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695506|gb|EEO85553.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700407|gb|EEO88439.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262363250|gb|ACY59971.1| cold-shock dead-box protein A [Yersinia pestis D106004]
 gi|262367181|gb|ACY63738.1| cold-shock dead-box protein A [Yersinia pestis D182038]
 gi|270337648|gb|EFA48425.1| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM D27]
 gi|294355647|gb|ADE65988.1| cold-shock dead-box protein A [Yersinia pestis Z176003]
 gi|320016694|gb|ADW00266.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 664

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 149/415 (35%), Gaps = 49/415 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++A    
Sbjct: 22  LTDLGYEKPSPIQLECIPHLLNGRDV------LGMAQTGSGKTAAFGLPLLHNIKADLKS 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       +++
Sbjct: 76  PQVLVLAPTRELAVQVAEALSSFSKHINGVNVVALYGG----QRYDVQLRALRQGPQVVV 131

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 132 GTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATM 191

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +    V     + + ++  L+    +   
Sbjct: 192 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALVRFLEAEDFDAAI 251

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +               + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 252 IFV----------RTKNATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 300

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 301 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 359

Query: 605 YTRLSVLKNTEDGFLIAEEDL--KQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
                 +K T     +   DL  ++R       + Q    +   +  +++ +LL 
Sbjct: 360 QNIERTMKLTIPEVELPNADLLSERRLAKFAAKVSQ----QLESSDLDMYRALLA 410


>gi|294142501|ref|YP_003558479.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12]
 gi|293328970|dbj|BAJ03701.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12]
          Length = 617

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 140/365 (38%), Gaps = 36/365 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  PT  Q ++I  ++           + Q   G+GKT    + + + +++    
Sbjct: 21  LDDLGYEKPTPIQAASIIPLMAGKD------ILGQAQTGTGKTGAFALPLLSTIDSSLNA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    Y ++   + V  I G      +  AL R       +I+
Sbjct: 75  PQILVLAPTRELAVQVAEAFASYAKHMKGLHVLPIYGGQSMHQQLNALRR----GPQVIV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLL--MTATP 430
           GT     D ++   L        +L   DE  + G    ++   + T     L   +AT 
Sbjct: 131 GTPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLALFSATM 190

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
             +   +    L +    KI    A  + I+   + +++ +++   ++V+  E  +   I
Sbjct: 191 PEQIKRVANKYLTEPVHVKIAATTATVETIEQRFVQVSQHNKLEALVRVLEVESTEGIII 250

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +            VE    L     +S + +HG M+   +E  +D  K G+  +LIAT
Sbjct: 251 FVRTRNS-------CVELAEKLEARGYAS-SPLHGDMNQQARERAVDQLKRGSLDILIAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV     +I  +  +   A +H++ GR  R       IL       +   T  
Sbjct: 303 DVAARGLDVERIGHVINYDIPYDTEAYVHRI-GRTDRAGRSGMAILFVTHREMRMLRTIE 361

Query: 609 SVLKN 613
              K+
Sbjct: 362 RATKS 366


>gi|242096928|ref|XP_002438954.1| hypothetical protein SORBIDRAFT_10g028940 [Sorghum bicolor]
 gi|241917177|gb|EER90321.1| hypothetical protein SORBIDRAFT_10g028940 [Sorghum bicolor]
          Length = 414

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 125/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 63  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 116

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 117 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS----GVHVVVGTPGRVFD 172

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 173 MLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEIT 232

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + + + D  ++ L          Y      +   
Sbjct: 233 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTL-------CDLYETLAITQSVI 285

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 286 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 345

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 346 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRD 387


>gi|296129739|ref|YP_003636989.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296021554|gb|ADG74790.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 581

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 128/363 (35%), Gaps = 40/363 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
             + F+ PT  Q   I  +L           +     G+GKT    + +  +V+   A  
Sbjct: 31  HGLGFTAPTPVQAQTIPALLAGRDV------VGVAQTGTGKTAAFGLPLLQSVDPDVAAV 84

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q V++ P   LA Q  + +  +      + V  + G  P   +++AL R     A +++G
Sbjct: 85  QVVVLTPTRELAMQVADALTSFAADMPGLQVVAVYGGSPYLPQQRALAR----GAQVVVG 140

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I    L L  V        DE  R G  + +            +++ TP  R
Sbjct: 141 TPGRVIDHIDRRTLRLDDVRMLVLDEADEMLRMGFAEDVDK----------VLSGTPAGR 190

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + L S       +         P+   +   +   E + +   V+    KA  +   + 
Sbjct: 191 QVALFSATMPPQIRRVADQHLVNPVSVAVSRQSSTVESVRQTYAVVPYRHKAGALARVLA 250

Query: 494 EKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        R   E   ++      + A I G ++  D+E +++  ++GT  +L+A
Sbjct: 251 VSDADAAIVFVRTREAAEEIGNVLVQRGIAAAHISGDVAQADRERIVERLRSGTLDVLVA 310

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV    +++  +      A +H++ GR GR       +    P         
Sbjct: 311 TDVAARGLDVERIGLVVNLDLPREPEAYVHRI-GRTGRAGRTGEALTFVTPSERPRLRQI 369

Query: 608 LSV 610
              
Sbjct: 370 ERT 372


>gi|187925284|ref|YP_001896926.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
 gi|187716478|gb|ACD17702.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 515

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 123/348 (35%), Gaps = 42/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
           +PT  Q  AI  +L           +     G+GKT    + +   +         +G +
Sbjct: 23  TPTPIQTQAIPAVLNG------GDLLAGAQTGTGKTAGFTLPILQRLNTMPAVTTGSGKR 76

Query: 324 A---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           A   +I+ P   LA Q  E ++ Y +  ++   ++ G +    +  AL         I++
Sbjct: 77  AVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRS----GVDIVV 132

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT- 429
            T     D +Q           L+L   D     G    +K  L +       LL +AT 
Sbjct: 133 ATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATF 192

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL    L    + ++  +    + +   I P++R  +      ++         +
Sbjct: 193 SDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNWFQVLV 252

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +         +    R        + S   IHG  S   +   +  FK+GT ++L+AT
Sbjct: 253 FTRT--------KHGANRLAEQLTKDSISALAIHGNKSQSARTRALAEFKDGTLQVLVAT 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            +   GID+     ++  +  +     +H++ GR GR       I L 
Sbjct: 305 DIAARGIDIDQLPHVVNYDLPNVPEDYVHRI-GRTGRAGATGEAISLV 351


>gi|281182808|ref|NP_001162410.1| probable ATP-dependent RNA helicase DDX43 [Papio anubis]
 gi|163781000|gb|ABY40781.1| DEAD box polypeptide 43 (predicted) [Papio anubis]
          Length = 648

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 126/365 (34%), Gaps = 39/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  A   +LQ +        I     G+GKTL  L+     ++            
Sbjct: 264 KPTPIQSQAWPIVLQGID------LIGVAQTGTGKTLCYLMPGFIHLDLQPTLKGQRNRP 317

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++ P   LA Q      KY+    +    + G   +  + + L +       III T
Sbjct: 318 GMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIEELRK----GVDIIIAT 372

Query: 383 HALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      +    +  +++DE  +           K      +L+   P  +T++ 
Sbjct: 373 PGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMK------ILLDVRPDRQTVMT 426

Query: 438 TSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           ++     + ++ +       I  V    ++ ++ + + I              ++     
Sbjct: 427 SATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMHTFLQNMSS 486

Query: 494 EKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             K   F S     + L         SI  +HG     D+E  +++FK G  ++LIAT +
Sbjct: 487 TDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVRILIATDL 546

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D + +   +        +H++ GR GR       I        + +   +++
Sbjct: 547 ASRGLDVHDVTHVYNFDFPRNIEEYVHRI-GRTGRAGRTGVSITTLTRNDWRVASELINI 605

Query: 611 LKNTE 615
           L+   
Sbjct: 606 LERAN 610


>gi|28198088|ref|NP_778402.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
 gi|182680716|ref|YP_001828876.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa M23]
 gi|28056148|gb|AAO28051.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
 gi|182630826|gb|ACB91602.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
 gi|307579180|gb|ADN63149.1| ATP-dependent RNA helicase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 446

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 132/375 (35%), Gaps = 36/375 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q+ AI   L           +     G+GKT    + +   + A          +A
Sbjct: 24  PTPIQQQAIPLALAGHD------LLAAAQTGTGKTAAFGLPVLQRLMAASSNVGAGKPRA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q ++ ++ Y +  ++   +I G +   ++   L R       ++I    
Sbjct: 78  LVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDVLRR----GVDLLIACPG 133

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D I+   + L  V         + L +    +   +L        +TL+ ++     
Sbjct: 134 RLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQNRQTLLFSATFAEP 193

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI------EEKKES 498
           I ++       +P + ++   N + E I      +   +K   +   +      +     
Sbjct: 194 IKQLA-LEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLYLLAQDSREQTLVFV 252

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +   ++  +  E +    A IHG  +   +   ++SFK G   +L+AT +   GID+ 
Sbjct: 253 RTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLVATDIAARGIDID 312

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
               +I  +        +H++ GR GR       I L     +K     + +L       
Sbjct: 313 QLPKVINYDLPMVAEDYVHRI-GRTGRNGVQGEAISLVTQEDAKLLRQIVRLL------- 364

Query: 619 LIAEEDLKQRKEGEI 633
              + D+  R   + 
Sbjct: 365 ---DRDMDIRDVPDF 376


>gi|145631096|ref|ZP_01786871.1| preprotein translocase subunit SecF [Haemophilus influenzae R3021]
 gi|144983381|gb|EDJ90863.1| preprotein translocase subunit SecF [Haemophilus influenzae R3021]
          Length = 614

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 134/364 (36%), Gaps = 36/364 (9%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+S I  +L           +     GSGKT    + + A +   E   
Sbjct: 21  SDLGFETPSPIQQSCIPHLLNG------NDVLGMAQTGSGKTAAFALPLLAQIDPSEKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  +++ +      +  + G      R     R     A +I+G
Sbjct: 75  QMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGG----QRYDIQLRALKQGAQVIVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 131 TPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMP 190

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I+     ++ + +    L+ +  E   A  I 
Sbjct: 191 EPIRRITKRFMNDPQEVKIKVNNENAPDIEQSCWYVHGVRKNEALLRFLEVEDFDAAIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +NG+  +++AT 
Sbjct: 251 ARTKTGTLD--------ITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S+++  +      + +H++ GR GR       +L   P   +       
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEH 361

Query: 610 VLKN 613
           ++K 
Sbjct: 362 LMKK 365


>gi|322820447|gb|EFZ27062.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 595

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 75/396 (18%), Positives = 137/396 (34%), Gaps = 49/396 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
           SPT  Q  A   +L    +   M+ +     GSGKTL  ++   A +          G  
Sbjct: 134 SPTAVQAQAWPILL----RGRDMVGV--AKTGSGKTLAFMVPALAHIAMQEPLRTGDGPM 187

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            V++AP   LAQQ  +  KK   +  +    + G  P+  +   L        HI++ T 
Sbjct: 188 VVVLAPTRELAQQIEQETKKVLPH-DLRCGCVYGGAPKGPQLGILRN----GVHILVATP 242

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D ++  +        L+L   D     G   Q R    Q       L+ +AT    
Sbjct: 243 GRLIDFLEIKRINFFRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDRQTLMFSATWPKE 302

Query: 434 TLVLTSLGDIDISKI---TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
              L +    D  +I   + +    K +    I      ++ E  K++ +   +   I  
Sbjct: 303 IQRLAAEFQKDWIRINVGSTELLANKDVTQHFILTQEHAKMDELKKLLANRLNQRVLIF- 361

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +   +      + +      IHG      +E +++ F+      L+AT V
Sbjct: 362 -------CKTKRTADDLEWQLKRWGYDAMAIHGDKEQRQREFILERFRKDPRLCLVATDV 414

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ +   +I  +        +H++ GR GR         L      + +   ++ 
Sbjct: 415 AARGLDIKELETVINYDFPMQIDDYVHRI-GRTGRAGAKGEAFTLITKREKQITPAVVTE 473

Query: 611 LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLI 646
           L        IA  D  Q++  + L      MP++ +
Sbjct: 474 L--------IAIVDRAQQQVPDWLREWGEQMPRYQV 501


>gi|9955400|dbj|BAB12216.1| vasa homolog [Ciona savignyi]
          Length = 688

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 138/371 (37%), Gaps = 47/371 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------EA 320
           PT  Q+ +I  I  D         +     GSGKT   L+ +   +            + 
Sbjct: 254 PTPVQKYSIPIINADRD------LMACAQTGSGKTAAFLLPVLTKLITNGLQSSQFSEKQ 307

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   L  Q +   +K+++ T +   +  G     H+ + L+R      HI+I
Sbjct: 308 TPRAIVVGPTRELIYQIFLEARKFSRGTVVRPVVAYGGTSMNHQIRDLQR----GCHILI 363

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQK------ATAPHVLLM 426
            T     D I    + L  V        D     G +  ++           +  H L+ 
Sbjct: 364 ATPGRLMDFINRGLVGLDHVEFVILDEADRMLDMGFETEIRKLASSPGMPSKSDRHTLMF 423

Query: 427 TATP---IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           +AT    I R        D     +         +   II +++ D+  + L+++    +
Sbjct: 424 SATFPDEIQRLAHDFLREDFLFLTVGRVGGACTDVTQSIIQVDQDDKRAKLLELISDVAE 483

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
                   +E K+ ++F + +     L +    + +I HG     ++E  +  FK+  C 
Sbjct: 484 TRSRTLVFVETKRGADFLACM-----LSQEGCPTTSI-HGDRLQQEREQALRDFKSAVCP 537

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPLSK 602
           +LIAT+V   G+D+     +I  +        +H++ GR GR   +      Y +    +
Sbjct: 538 ILIATSVAARGLDIPKVEHVINYDMPKEIDEYVHRI-GRTGRCGNLGRATTFYDNNKDGE 596

Query: 603 NSYTRLSVLKN 613
            + + + +L  
Sbjct: 597 LARSLVKILSE 607


>gi|9955402|dbj|BAB12217.1| vasa homolog [Ciona savignyi]
          Length = 770

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 138/371 (37%), Gaps = 47/371 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------EA 320
           PT  Q+ +I  I  D         +     GSGKT   L+ +   +            + 
Sbjct: 336 PTPVQKYSIPIINADRD------LMACAQTGSGKTAAFLLPVLTKLITNGLQSSQFSEKQ 389

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   L  Q +   +K+++ T +   +  G     H+ + L+R      HI+I
Sbjct: 390 TPRAIVVGPTRELIYQIFLEARKFSRGTVVRPVVAYGGTSMNHQIRDLQR----GCHILI 445

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQK------ATAPHVLLM 426
            T     D I    + L  V        D     G +  ++           +  H L+ 
Sbjct: 446 ATPGRLMDFINRGLVGLDHVEFVILDEADRMLDMGFETEIRKLASSPGMPSKSDRHTLMF 505

Query: 427 TATP---IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           +AT    I R        D     +         +   II +++ D+  + L+++    +
Sbjct: 506 SATFPDEIQRLAHDFLREDFLFLTVGRVGGACTDVTQSIIQVDQDDKRAKLLELISDVAE 565

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
                   +E K+ ++F + +     L +    + +I HG     ++E  +  FK+  C 
Sbjct: 566 TRSRTLVFVETKRGADFLACM-----LSQEGCPTTSI-HGDRLQQEREQALRDFKSAVCP 619

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPLSK 602
           +LIAT+V   G+D+     +I  +        +H++ GR GR   +      Y +    +
Sbjct: 620 ILIATSVAARGLDIPKVEHVINYDMPKEIDEYVHRI-GRTGRCGNLGRATTFYDNNKDGE 678

Query: 603 NSYTRLSVLKN 613
            + + + +L  
Sbjct: 679 LARSLVKILSE 689


>gi|167752241|ref|ZP_02424368.1| hypothetical protein ALIPUT_00483 [Alistipes putredinis DSM 17216]
 gi|167660482|gb|EDS04612.1| hypothetical protein ALIPUT_00483 [Alistipes putredinis DSM 17216]
          Length = 650

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 127/344 (36%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q   I  +L           I Q   G+GKT    + +   + +     QA+++ 
Sbjct: 27  TPSAIQSLTIPHLLT-----TDKDIIAQAQTGTGKTAAFGLPIIQMLTSRRNIPQAIVLV 81

Query: 329 PIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q   E I        + +  I G      + + L++       I++GT     
Sbjct: 82  PTRELALQVTQELIS--FNTHDLSIAPIYGGASMTEQLRRLKK----GIDIVVGTPGRIL 135

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKAT--APHVLLMTATPIPRT--L 435
           D I+   L L  +        DE    G  + ++    A      VLL +AT   R   L
Sbjct: 136 DHIRRGTLDLSAIAYLVLDEADEMLNMGFIEDIEEIMHAMTGPKRVLLFSATMPDRIAAL 195

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               + + D+ K+  +         +   +   D+     +++  E +    +  +    
Sbjct: 196 ARNYMHEPDLLKVESQHVTTDLTNQIYFEVREGDKFDALTRIIDVEPEFYGIVFSRTRTG 255

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            +     ++ER          +  ++HG +S   +E ++  FK     +L+AT V   GI
Sbjct: 256 ADDIVAKLLER--------GYAAEVLHGDISQAQREKILGKFKKKQVNILVATDVAARGI 307

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV + + +I  +      + +H++ GR GR     + I    P 
Sbjct: 308 DVSNLTHVINYSLPQDSDSYVHRI-GRTGRAGNQGTAITFISPS 350


>gi|123455589|ref|XP_001315537.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121898217|gb|EAY03314.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 598

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 121/363 (33%), Gaps = 40/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
            PT  Q  +I   L+          I     GSGKT   LI     +          G  
Sbjct: 147 KPTPIQSVSIPVALKGHD------LIGIAKTGSGKTAAFLIPAMVHIGLQEPMYRGDGPI 200

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++++P   LAQQ  E  K +  N  I    + G   +  +   L  +      +++ T 
Sbjct: 201 VLVLSPTRELAQQIAEVAKGFCDNLMIRQTCLFGGAGRGPQANDLRHLPS----LVVATP 256

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAPHVLLMTATPIP-- 432
               D I+  +        L+L   D+    G + Q  K+    +     +M +   P  
Sbjct: 257 GRLIDFIEGGQCPMNRVNFLVLDEADQMLDMGFEPQIRKIIGHISKDRQTMMFSATWPKE 316

Query: 433 -RTLVLTSLGDIDISKITEKPAGRK-PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
            + L    L D     I  K       IK VI      +++ + L+V+         I  
Sbjct: 317 IQQLAADFLVDPVHMIIGNKDLTTNSNIKQVITKCEEFEKLSKCLEVLNEHKDDKIIIFT 376

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +   +               +HG  +   ++ V+  F++    +L+AT V
Sbjct: 377 --------KTKRTTDDLQENLNMKGFQAYSLHGDKAQNQRDFVLGKFRSCKKGILVATDV 428

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D  I+I  +        +H++ GR  RG +    +  +       S     +
Sbjct: 429 AARGLDVNDIDIVINYDFPGDIETYVHRI-GRTARGNKEGLAVTFFTDENKNMSRKLAKI 487

Query: 611 LKN 613
           +  
Sbjct: 488 MTQ 490


>gi|77461141|ref|YP_350648.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77385144|gb|ABA76657.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 446

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 136/369 (36%), Gaps = 38/369 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + +PT  Q  AI  +L           +     G+GKT    + +   +   G  
Sbjct: 16  LEKLGYQTPTPVQAQAIPVVLAGRD------LMAAAQTGTGKTAGFALPLLQLLAMEGPK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+I+ P   LA+Q +E +++Y +N  +    + G +    +   L     G  
Sbjct: 70  VTANSVRALILVPTRELAEQVHEAVRQYAENLPLRTYAVYGGVSINPQMMKLR----GGV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +++ T     D     ++++ +L  +++DE  R      L L       ++    A P 
Sbjct: 126 DLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRM-----LDLGFSEELANIYR--ALPK 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  ++        P    + P N     +++  V + + +K       
Sbjct: 179 KRQTLLFSATFSDDIRLLAGQMLNDPQSIEVSPRNVAANTVKQWVVTVDKKRKPELFVHL 238

Query: 492 IEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           + + K          R+ V+      +    +   IHG      ++  +D FK    ++L
Sbjct: 239 MRKNKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKLSEVQIL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+D+ D  +++  +        +H++ GR GR       I L          
Sbjct: 299 VATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRI-GRTGRAGSTGEAISLVCADEVNMLS 357

Query: 606 TRLSVLKNT 614
               + ++T
Sbjct: 358 AIEMLTRST 366


>gi|83953760|ref|ZP_00962481.1| DEAD/DEAH box helicase [Sulfitobacter sp. NAS-14.1]
 gi|83841705|gb|EAP80874.1| DEAD/DEAH box helicase [Sulfitobacter sp. NAS-14.1]
          Length = 444

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 129/363 (35%), Gaps = 43/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q+ AI      M+ ++ M        G+GKT    I + A +            +
Sbjct: 35  DPTPIQKQAIP---HGMNGRDVM---GLAQTGTGKTAAFGIPLVAQMLEREARPEPRTVR 88

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  E +K + + TQ+   +I G      + K +ER       +++ T 
Sbjct: 89  GLVLAPTRELANQIMENLKGFCEGTQLKTMMIVGGQSINPQIKRMER----GVDLLVATP 144

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +            L+L   D+    G    L+                   +T+
Sbjct: 145 GRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIAAVLPKE---------RQTM 195

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     +++I        PI+  + P  +  + I +    +++ +K   +   + + 
Sbjct: 196 LFSATMPKLMNEIANSYLN-SPIRIEVSPPGKAADKITQEVHFIAKAEKKSLLIELLGKH 254

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            E         +   E+            A IHG  S   ++  ++SFK G   +L+AT 
Sbjct: 255 TEERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESFKKGEVTVLVATD 314

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D   +      +     +H++ GR  R  +  + I    P           
Sbjct: 315 VAARGLDIPDVKHVYNYELPNVPDNYVHRI-GRTARAGKDGAAIAFCAPDEMGELKDIQK 373

Query: 610 VLK 612
            +K
Sbjct: 374 TMK 376


>gi|119468940|ref|ZP_01611965.1| putative ATP-dependent RNA helicase (rhlE-like) [Alteromonadales
           bacterium TW-7]
 gi|119447592|gb|EAW28859.1| putative ATP-dependent RNA helicase (rhlE-like) [Alteromonadales
           bacterium TW-7]
          Length = 415

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 135/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q   I  IL           +     G+GKT   ++ +   +            +
Sbjct: 26  TPTAIQIKTIPPILAG------NDVMGSAQTGTGKTAAFVLPLLHKLLNTPKKDEPGIAR 79

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            VI+ P   LAQQ +   +KY Q + +   +  G      + KAL+      A +I+ T 
Sbjct: 80  VVILTPTRELAQQVFASFEKYAQGSNVQGALAYGGASIGPQIKALK-----TAQVIVATP 134

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D I    ++L  VD    F    R+           +L       +TL+ ++  D 
Sbjct: 135 GRLLDHIVKGSVVLSSVD-SLVFDEADRMLDMGFIDEIKRILRHIPGDRQTLLFSATFDD 193

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---- 499
            +  ++EK   + P    +   N     +E++   + E +K   +   I  K        
Sbjct: 194 SVFGLSEK-LLKNPELIEVDKRNSAAVEVEQIIYAVDEDRKRELVSHMIGMKNWRQVLIF 252

Query: 500 --FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              + + ++              IHG  S   ++  + +FK GT ++L+AT V   G+D+
Sbjct: 253 TRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGTTRVLVATDVAARGLDI 312

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
                +I     +     +H++ GR GR  E    + L            + VL +T   
Sbjct: 313 PALKYVINFELPYIAEDYVHRI-GRTGRAGEQGLAMSLVSIDEQWL-LEEIEVLLDT--- 367

Query: 618 FLIAEEDLK 626
             +A + L+
Sbjct: 368 -RLAPQWLE 375


>gi|167737747|ref|ZP_02410521.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           14]
          Length = 409

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 125/368 (33%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAKAIPVVLSGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    A    +  ++  +   D+    +K++     K   +
Sbjct: 203 SPEIKKLASTYLRNPQAIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      A IHG  S  ++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 373

Query: 609 SVLKNTED 616
            ++K T  
Sbjct: 374 KLIKRTLS 381


>gi|119510127|ref|ZP_01629266.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
 gi|119465188|gb|EAW46086.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
          Length = 437

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 119/352 (33%), Gaps = 42/352 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q  AI  +L           +     G+GKT    + M   + +           
Sbjct: 23  EPTPIQMQAIPAVLSG------SDLLAGAQTGTGKTAGFTLPMLHRLSSDKNVKSTSHGY 76

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+ P   LA Q    ++ Y +  ++   ++ G +    +++ L+    G+  I+
Sbjct: 77  SPIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQKRLLKE---GRVDIL 133

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT 429
           + T     D +Q           L+L   D     G     R  L+        LL  AT
Sbjct: 134 VSTPGRLLDHVQQGTVNLSHIEILVLDEADRMLDMGFIRDIRRILSLLPKQRQNLLFFAT 193

Query: 430 PIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              +   L    L    + ++  +      +   +  ++R  +   +L   L      Y 
Sbjct: 194 FSEKIKALAAGLLNRPKMIEVARRNVTADTVTQKVYKVDRDKK--RQLLAHLIRQDNWYQ 251

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +            +   +R              IHG  S   +   +  FKN + ++L+A
Sbjct: 252 VLVFTRT------KYGADRLVKQLGEERIQALAIHGNKSQSSRTHTLAKFKNNSLQVLVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           T +   G+D+ +   ++  +  +     +H++ GR GR       I L    
Sbjct: 306 TDIAARGLDISELPHVVNFDLPNVAEDYVHRI-GRTGRAGASGEAISLVSAD 356


>gi|299135820|ref|ZP_07029004.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298601944|gb|EFI58098.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 490

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 132/357 (36%), Gaps = 29/357 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQ- 323
           +PT  Q  AI   L+          +     G+GKTL  LI M   +E        G + 
Sbjct: 52  TPTPVQAGAIPPALEG------DDILATASTGTGKTLSFLIPMIDRLEEISKPSTRGAKN 105

Query: 324 ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              A+I+ P   LA Q  +   K     +    ++ G + +  + + L R       +++
Sbjct: 106 PILALILLPTRELAMQVLDSYFKICPTLKSDAVLVCGGLSENTQLEQLSR----GPRLVV 161

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T    +D ++   + L  VD         R+       A   ++       +T+  ++ 
Sbjct: 162 ATPGRLEDFLRRRSVSLKDVD-MLVLDEVDRMLDMGFLPAIKRIVQALPKDRQTMCYSAT 220

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
            D  I +I        P++  I   ++  + +E     + + +K   +   ++E++ +  
Sbjct: 221 LDASIREIVRDYVN-NPVRIEIGTTSKPSDRVELRVYTVMQDQKLAQLDKMLKEEEGTYL 279

Query: 500 ----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   +R     E       +IHG  S   + + + +F  G  ++L+AT V   GI
Sbjct: 280 VFSRTKHGADRIAKKLEKAGHLTEVIHGDRSQSQRTAALRNFTMGKARILVATDVAARGI 339

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           DV   + ++  +  +     +H++ GR GR            P    ++      LK
Sbjct: 340 DVSHIAHVVNYDLPNGSDDFVHRI-GRTGRAGAKGVATTFVTPLEKGDARKLERELK 395


>gi|269124787|ref|YP_003298157.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
           curvata DSM 43183]
 gi|268309745|gb|ACY96119.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
           43183]
          Length = 562

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 144/391 (36%), Gaps = 51/391 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA-----AVE 319
           L  + +  PT  Q  AI  +L           + Q   G+GKT    + +       A E
Sbjct: 25  LAGLGYEEPTPIQREAIPHLLAGRD------LLGQAATGTGKTAAFALPILHRTPRPADE 78

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               A+++ P   LA Q  +   +Y +   + V  + G  P   + + L+R       ++
Sbjct: 79  PDPGALVLVPTRELAVQVADAFHRYGREMGVRVLPVYGGAPIGRQIQVLKR----GVDVV 134

Query: 380 IGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT 429
           + T     D I            ++L   DE    G  + +   L Q       +L +AT
Sbjct: 135 VATPGRALDLIDRDVLRLARLRTVVLDEADEMLDMGFAEDIEAILAQTPPQRQTVLFSAT 194

Query: 430 PIPRTLVLTSLGDIDISKIT----EKPAGRKP-IKTVIIPINRIDEVIERLKVVLSEGKK 484
             PR   +      +  +I     E+  GR P ++     ++R  +     +++  E   
Sbjct: 195 VPPRIDGIARRHLREPVRIEIARPEREVGRPPLVRQRAYVVDRAHKPAALGRLLDVEAPT 254

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  +  +         R  V+    +          +HG MS   ++ VM   + GT +L
Sbjct: 255 AAIVFCRT--------RDQVDELTEMLNGRGYRAEALHGGMSQDQRDRVMGRLRAGTAEL 306

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   GIDV   + ++  +      + +H++ GRVGR         L  P   +  
Sbjct: 307 LIATDVAARGIDVEHLTHVVNYHVPSDPDSYVHRI-GRVGRAGREGVAFTLAEP---REH 362

Query: 605 YTRLSVLKNTEDGFLIAEE------DLKQRK 629
               S+ + T  G  I  E      DL+ R+
Sbjct: 363 RMLKSIERAT--GHKITIEKIPTVADLRARR 391


>gi|218701933|ref|YP_002409562.1| ATP-dependent RNA helicase DeaD [Escherichia coli IAI39]
 gi|218371919|emb|CAR19775.1| ATP-dependent RNA helicase [Escherichia coli IAI39]
          Length = 629

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  E + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLEQYRALLSKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 TAE---GEELDLETLAAALLKMA 432


>gi|154342919|ref|XP_001567405.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134064737|emb|CAM42842.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 604

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 138/375 (36%), Gaps = 50/375 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+  I  +L+          +     GSGKT   LI     +             
Sbjct: 147 KPTPVQKYGIPCVLKG------SDLMACAQTGSGKTAAYLIPAINFMLVNNLNRAKPTNS 200

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           ++   A++++P   L+ Q YE  +K+T  T I   ++ G     H+   L R       +
Sbjct: 201 QSAPSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRHQIHELTR----GCGL 256

Query: 379 IIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLK--------LTQKATAPH 422
           ++ T     D              L+L   D     G + +++                 
Sbjct: 257 LVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPDSDMPPPGERQ 316

Query: 423 VLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            LL +AT     + +    L      ++    +  + I   +  +  +D+      + + 
Sbjct: 317 TLLYSATFPKEIQQMAREFLYRHYFLQVGRVGSTTENITQDVRWVEDMDK--RGCLLEVL 374

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +  +   +   +E+K+++++                  + IHG     ++E  +D FK+G
Sbjct: 375 KEHQGERVLVFVEKKRDADY------LERYLRQSRIPCSSIHGDRVQREREEALDIFKSG 428

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
            C++L+AT V   G+D+ + ++++  +        +H++ GR GR  +  + I  ++   
Sbjct: 429 VCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRI-GRTGRAGKRGTAISFFNEKN 487

Query: 601 SKNSYTRLSVLKNTE 615
                  + +L+ T 
Sbjct: 488 RNVVDDLIPLLRETN 502


>gi|225684976|gb|EEH23260.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb03]
 gi|226294288|gb|EEH49708.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 399

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVLRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+       H++ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQ----HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 157 MIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 208 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQ 266

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 267 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 326

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 327 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTSE 371


>gi|118589362|ref|ZP_01546768.1| ATP-DEPENDENT RNA HELICASE DEAD [Stappia aggregata IAM 12614]
 gi|118438062|gb|EAV44697.1| ATP-DEPENDENT RNA HELICASE DEAD [Stappia aggregata IAM 12614]
          Length = 697

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 87/388 (22%), Positives = 148/388 (38%), Gaps = 49/388 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------- 323
            T  QES + D             ++    GSGKT+   +A+A  +  G           
Sbjct: 23  LTSVQESVLSDA------PPEADLLVSAQTGSGKTVAFGLALAPTLLDGKDTLGQAGAPI 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+ +AP   LA Q  E +         +     G M     R+ LER      HI++GT 
Sbjct: 77  ALAIAPTRELALQVKEELTWLYNEAGAVTASCVGGMDPRMERRTLER----GVHIVVGTP 132

Query: 384 ALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPR 433
              +D I+   L L  +        DE    G ++ L+    A       L+ +AT   +
Sbjct: 133 GRLRDHIERGALDLSEIKAVVLDEADEMLDMGFREDLEFILDAAPQDRRTLMFSATVPRQ 192

Query: 434 TLVLTSLGDIDISKIT-----EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
              L      D  +++     E+      +   + P  R + +I  L+    E +KA   
Sbjct: 193 IAELAKRFQKDAVRLSTINAREQHGDIDYVAHPVAPNERENAIINVLRQ--HEAEKAIVF 250

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C           R  V R  S   +   SI  + G +S   + S + + K+G  ++ +AT
Sbjct: 251 CST---------REAVSRLTSRLANRGFSIVSLSGELSQEQRSSALAAMKDGRARVCVAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+ +  ++I  +      A LH+  GR GR     +C+L+   P  + +   L
Sbjct: 302 DVAARGIDLPNLDLVIHADLPTGKAALLHR-SGRTGRAGRKGTCVLMVPFPRRRQAERVL 360

Query: 609 SV--LKNTEDGFLIAEEDLKQRKEGEIL 634
               +  T  G   A +D++ + +  +L
Sbjct: 361 QFAGITATWKGAPTA-DDIRAKDKERLL 387


>gi|75906865|ref|YP_321161.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
           29413]
 gi|75700590|gb|ABA20266.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
           29413]
          Length = 513

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 132/348 (37%), Gaps = 32/348 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + F+ PT  Q  AI  +L           + Q   G+GKT    + +   ++     
Sbjct: 18  LEKLGFTAPTNIQAQAIPQLLSGRDV------VGQSQTGTGKTAAFSLPILERLDPQQKA 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q ++ + ++  N+ +    I G      +   L+R      HI++G
Sbjct: 72  VQAIVLTPTRELAIQVHDAMAQFIGNSGLRTLAIYGGQSIDRQMLQLKR----GVHIVVG 127

Query: 382 THALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D ++   L L  V     DE         +   +K      +L  A    +T +
Sbjct: 128 TPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEK------ILSQAPQERQTAL 181

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     I  +  K        TV  P    +++ +   ++     KA  + P +E + 
Sbjct: 182 FSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEMED 241

Query: 497 ESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     R       S  +    S+   HG +S   +E ++  F++   + ++AT +
Sbjct: 242 PETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATDI 301

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+DV   S +I  +        +H++ GR GR  +  + I L  P
Sbjct: 302 AARGLDVDQLSHVINYDLPDSVETYVHRI-GRTGRAGKEGTAITLVQP 348


>gi|88704236|ref|ZP_01101950.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis
           KT71]
 gi|88701287|gb|EAQ98392.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis
           KT71]
          Length = 604

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 72/340 (21%), Positives = 133/340 (39%), Gaps = 35/340 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P+  Q   I  +L+          + Q   G+GKT    + + A ++A     QA+++A
Sbjct: 30  TPSAIQTMTIPPLLEGKD------LVGQAQTGTGKTAAFALPILARLDAKLAKPQALVLA 83

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  +KY +++    V  I G      + + L+R      H+I+GT     
Sbjct: 84  PTRELAIQVAEAFQKYARHSKGFKVLPIYGGSDYRTQLRQLQR----GVHVIVGTPGRVM 139

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP--RTL 435
           D ++           L+L   DE  R G    ++    Q      + L +AT     R +
Sbjct: 140 DHMRRGSLDLSALKTLVLDEADEMLRMGFIDDVEWILEQTPPERQIALFSATMPDAIRRI 199

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L   +   I  K      I+  +  +  + ++    +++ +E      I  +    
Sbjct: 200 AQQHLSKPEEITIKLKTVTNASIRQRVWMMGGMHKLDALTRILETEDTDGIIIFVR---- 255

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                 +  E  + L      + A+ +G +    +E  +++ K G   +L+AT V   G+
Sbjct: 256 ---TRIATQELADKLAARGYGTAAL-NGDIPQNLREKTVENLKKGALDILVATDVAARGL 311

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           DV   S +I  +  +   A +H++ GR GR       IL 
Sbjct: 312 DVERISHVINYDIPNDPEAYVHRI-GRTGRAGRTGEAILF 350


>gi|152979711|ref|YP_001345340.1| DEAD/DEAH box helicase domain-containing protein [Actinobacillus
           succinogenes 130Z]
 gi|150841434|gb|ABR75405.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes
           130Z]
          Length = 615

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 85/433 (19%), Positives = 161/433 (37%), Gaps = 52/433 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           SP+  Q + I  +L+          +     GSGKT    + + A +++     Q ++MA
Sbjct: 28  SPSPIQHACIPHLLEGRDV------LGMAQTGSGKTAAFSLPLLAQIDSDEKYPQMLVMA 81

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  +++T+N   I +  + G      R     R     A +++GT     
Sbjct: 82  PTRELAIQVADACEQFTKNAKGIRIVTLYGG----QRYDIQLRALRQGAQVVVGTPGRIL 137

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D I+   L        +L   DE  R G    ++                   +T + ++
Sbjct: 138 DHIKRGTLDLSALKFIVLDEADEMLRMGFIDDVETVMAELPEQ---------HQTALFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                I +IT++     P +  I    R +  I +    +   +K   +   +E +    
Sbjct: 189 TMPEPIRRITKRFMT-NPQEVRIQSTQRTNPDIAQSCWYVRGYRKNEALLRFLEVEDFDA 247

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  ++       L +      A ++G M+   +E  +D  +NG+  +L+AT V   
Sbjct: 248 AIIFTRTKTGTLDVTELLDKHGFRAAALNGDMTQQAREQTLDRLRNGSLDILVATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV   S+++  +      + +H++ GR GR     S IL   P   +       ++K 
Sbjct: 308 GLDVERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGSAILFVEPRERRLLGNIERLMKK 366

Query: 614 TEDGFLIAEEDLKQ--RKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
             +   +   +  Q  R+   +  I +         Q E HD  LE  R   + + T D 
Sbjct: 367 PIEEVELPNHERLQACRRAKFVAKITK---------QLEHHD--LEKYRSLLEDLFTADQ 415

Query: 672 DLTSVRGQSIRIL 684
           D   +    + +L
Sbjct: 416 DQEDIAAAMLMLL 428


>gi|257455420|ref|ZP_05620655.1| ATP-dependent RNA helicase RhlB [Enhydrobacter aerosaccus SK60]
 gi|257447382|gb|EEV22390.1| ATP-dependent RNA helicase RhlB [Enhydrobacter aerosaccus SK60]
          Length = 391

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/391 (18%), Positives = 143/391 (36%), Gaps = 40/391 (10%)

Query: 249 KEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
                         ++ +  + + + T  Q   + + L           I Q   G+GKT
Sbjct: 1   MFQTFSQLPLHPALKQAIDQLGYQTLTPIQAQILPNTLAGQD------AIGQAQTGTGKT 54

Query: 308 LVALIAMAAAVEAGG--------------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
              L+ +   +                  +A+++AP   LAQQ Y+   + T+ T++   
Sbjct: 55  ATFLLTIINELLNNPLNPEIDGDRFLGETRALVLAPTRELAQQIYQDCLELTKFTELHTV 114

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGV 408
            + G      + K L +       III T     D      +   +L ++++DE  R   
Sbjct: 115 CLLGGTDYETQSKQLHQKF---VDIIIATPGRLIDFCFQHHVYLDRLEILVLDEADRMLD 171

Query: 409 QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
              +   ++     + +M A    +TL+ ++  + D+  +  +    +PI   I P  + 
Sbjct: 172 MGFIPDIKRL----IRMMPANTHRQTLLFSATFNQDVMNLAYRWL-YQPIFVEIAPEQKT 226

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEE---KKESNFRSVVERFNSLHEHF--TSSIAIIHG 523
            + IE+L   L E  K   +   IE+   KK   F +  ++   L++       + I+ G
Sbjct: 227 SQTIEQLFFTLMESDKLAALQQIIEKISPKKMIVFANRKDQVKRLYDKLNRQYKVVILSG 286

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +    +E  +  F+ G   +L+AT V   GI V D + ++           +H++ GR 
Sbjct: 287 DVIQAKREKYLAQFRQGDANILVATDVAGRGIHVDDVACVVNYTLPDSPDDYVHRI-GRT 345

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           GR       I         N       L  +
Sbjct: 346 GRAGNKGMSISFISENDGFNLPAIEQYLDES 376


>gi|118639520|gb|ABL09512.1| ATP-dependent RNA helicase [Halobacillus halophilus DSM 2266]
          Length = 395

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 77/355 (21%), Positives = 133/355 (37%), Gaps = 31/355 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +PT  Q+ AI  ++           I Q   G+GKT   L+ +   +   EA  QAVI+ 
Sbjct: 25  APTPIQQEAIPALMDGRDV------IAQAQTGTGKTFAFLLPILQNIRVDEASVQAVIVT 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E ++K  +   + V  + G    A +   L     GQAHI+I T     D
Sbjct: 79  PTRELALQITEEVRK-LKTEDMHVLAVYGGQDVAKQAHKL----DGQAHIVIATPGRMLD 133

Query: 389 SIQYYKLILVIV-----DEQHRFG-----VQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            ++   + L  V     DE  +          +  L+Q   A   +L +AT   +   L 
Sbjct: 134 HLRRGTISLEAVKYMVLDEADQMLEAGFLPDVKDILSQTPEAKQTMLFSATITTQVNQLG 193

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D  +IT +           +     D   +   + + +  + +        K   
Sbjct: 194 KKILKDPRRITVQEKTVTLEGIKQLVYETTDRAKQDTLIEIMQEHRPFLALIFCRTK--- 250

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             R   +  ++L  H   +   +HG +S   +E VM  F++   + L+AT V   G+DV 
Sbjct: 251 --RRARKLNDALLSHGFEA-DELHGDLSQAKREKVMKRFRDAKIQYLVATDVAARGLDVE 307

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
             + +   +      + +H++ GR GR       I    P   +   +    +K 
Sbjct: 308 GVTHVFNYDIPQDPESYIHRI-GRTGRAGGKGLAITFAAPKDRQALQSIEKSIKQ 361


>gi|157128260|ref|XP_001661370.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882257|gb|EAT46482.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 639

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 140/386 (36%), Gaps = 42/386 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       +        M+ I     GSGKTL  L+     ++         G  
Sbjct: 109 TPTPIQSQGWPIAM----SGRDMVGI--AKTGSGKTLSYLLPALMHIDQQSRLRRGDGPI 162

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LAQQ  +    + +  +I    + G   +  +   L+        I+I T 
Sbjct: 163 ALILAPTRELAQQIKQVTDDFGRAMKIKNTCLFGGGAKRQQGDDLKY----GVEIVIATP 218

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D          +   +++DE  R                  ++    P  +TL+ +
Sbjct: 219 GRLIDFLSSEHTNLRRCSYLVLDEADRMLDMGFEPQI------RAIIEQIRPDHQTLMWS 272

Query: 439 SLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +     +S++ +          V    +   + I ++I+  +    E K +  +   + E
Sbjct: 273 ATWPDAVSRLVKDYLKDYIQINVGSLKLAANHNILQIIDVCQEHEKEAKLSILLREIMAE 332

Query: 495 KKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           K+         +  V+               IHG  S  ++E  ++SF++G   +LIAT 
Sbjct: 333 KECKTIIFIETKKRVDDITRKVLRDGWPAMCIHGDKSQREREYTLNSFRSGKNPILIATD 392

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV D   +I  +        +H++ GR GR     +    + P  +  +   + 
Sbjct: 393 VAARGLDVDDVKFVINFDYPTTSEDYIHRI-GRTGRSNNTGTAYTFFTPDNAGRARELID 451

Query: 610 VLKNTE---DGFLIAEEDLKQRKEGE 632
           VLK  +   +  L+    ++ +  G+
Sbjct: 452 VLKEAKQVINPKLLDMTTMRIKGRGK 477


>gi|91775611|ref|YP_545367.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709598|gb|ABE49526.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
          Length = 456

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 121/357 (33%), Gaps = 37/357 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +PT  Q  AI ++L+          +     G+GKT    +     +         G + 
Sbjct: 23  TPTPIQAQAIPEVLEGHD------LMASAQTGTGKTAAFTLPALNLLATPHPAKSRGPRI 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E  +KY +  +     I G MP   + K L +       I++ T  
Sbjct: 77  LVLTPTRELAAQVNEAARKYGKFLRARTVSIVGGMPYPLQNKLLSQP----IDILVATPG 132

Query: 385 LFQDSIQYYK-----LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D ++  +     L ++I+DE  R      +   ++       + +A P  R  ++ S
Sbjct: 133 RLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIER-------ISSALPSERQTLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI------- 492
                      K   + P    I         IE+  + + +      +   +       
Sbjct: 186 ATFEGQIANIAKTLLKTPKVIQIAAQKEKHANIEQKLLFVDDMAHKNKLLEHLLIAPGVN 245

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +    ++ +   +             A +HG M+   +   +   ++G  ++L+AT V  
Sbjct: 246 QAIVFTSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVRVLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
            GIDV   + +I  +   F    +H++ GR GR       +                
Sbjct: 306 RGIDVQGITHVINYDLPKFAEDYVHRI-GRTGRAGNTGVALSFASHMDRHQLRKIEQ 361


>gi|307313131|ref|ZP_07592757.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|306907042|gb|EFN37550.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|315062470|gb|ADT76797.1| ATP-dependent RNA helicase [Escherichia coli W]
 gi|323376942|gb|ADX49210.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
          Length = 629

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW--GMRKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 TAE---GEEQDLETLAAALLKMA 432


>gi|242060494|ref|XP_002451536.1| hypothetical protein SORBIDRAFT_04g003390 [Sorghum bicolor]
 gi|241931367|gb|EES04512.1| hypothetical protein SORBIDRAFT_04g003390 [Sorghum bicolor]
          Length = 410

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 126/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 59  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 112

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 113 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS----GVHVVVGTPGRVFD 168

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L +T
Sbjct: 169 MLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEIT 228

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + + + D  ++ L          Y      +   
Sbjct: 229 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTL-------CDLYETLAITQSVI 281

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 282 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 341

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 342 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRD 383


>gi|154504732|ref|ZP_02041470.1| hypothetical protein RUMGNA_02239 [Ruminococcus gnavus ATCC 29149]
 gi|153794906|gb|EDN77326.1| hypothetical protein RUMGNA_02239 [Ruminococcus gnavus ATCC 29149]
          Length = 550

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 139/371 (37%), Gaps = 36/371 (9%)

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +++F +E+            K ++++ F   +  Q  AI  I+           I Q   
Sbjct: 20  KRRFMEELKFEELELCPEILKAVKHMGFEEASPIQSKAIPVIMSGKDV------IGQAQT 73

Query: 303 GSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGN 358
           G+GKT    I +   ++      QA+++ P   LA Q  E I+   +    I V  I G 
Sbjct: 74  GTGKTAAFGIPLLEKIDPKNKKLQAIVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGG 133

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQ 410
                + ++L+        ++IGT     D ++         + ++L   DE    G ++
Sbjct: 134 QEIVKQIRSLKS----GTQLVIGTPGRVMDHMRRKTMKMDHVHTIVLDEADEMLNMGFRE 189

Query: 411 RL--KLTQKATAPHVLLMTATPIPRTLVLT--SLGDIDISKITEKPAGRKPIKTVIIPIN 466
            +   L         +L +AT     L +T     + ++ K+T+K      I+     + 
Sbjct: 190 DIETILEGIPQEHQTVLFSATMPKAILEITKQFQTNAELVKVTKKELTVPNIEQFYYEVK 249

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
             ++     + VLS     Y   P++     +  + V    N L      +  + HG M 
Sbjct: 250 PKNK-----EEVLSRLLDIYT--PKLSVVFCNTKKQVDLLVNGLLGRGYFAAGL-HGDMK 301

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              ++ VM  F++G   +L+ T V   GIDV D   +   +        +H++ GR GR 
Sbjct: 302 QAQRDRVMQGFRSGKTDILVCTDVAARGIDVDDVEAVFNYDLPQDDEYYVHRI-GRTGRA 360

Query: 587 EEISSCILLYH 597
             +        
Sbjct: 361 GRVGRSFSFVS 371


>gi|15226155|ref|NP_180929.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75319077|sp|P93008|RH21_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 21
 gi|1707017|gb|AAC69128.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
           [Arabidopsis thaliana]
 gi|17473908|gb|AAL38370.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
           [Arabidopsis thaliana]
 gi|20259792|gb|AAM13243.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
           [Arabidopsis thaliana]
 gi|330253781|gb|AEC08875.1| DEAD-box ATP-dependent RNA helicase 21 [Arabidopsis thaliana]
          Length = 733

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 140/397 (35%), Gaps = 47/397 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----------A 320
            P+  Q +AI   LQ      +   I   + GSGKT   ++ M A +             
Sbjct: 335 KPSPIQMAAIPLGLQ------QRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETE 388

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  AV+MAP   LAQQ  E   K+       V  I G      +   + +       I+I
Sbjct: 389 GPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCE----IVI 444

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVL-------- 424
            T     D ++           ++L   D     G + ++     A     L        
Sbjct: 445 ATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEE 504

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           L        T + ++     + ++  K   R P+   I    +  ++I +  +++ E +K
Sbjct: 505 LDEKKIYRTTYMFSATMPPGVERLARKYL-RNPVVVTIGTAGKTTDLISQHVIMMKESEK 563

Query: 485 AYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            + +   ++E  E       N +   +      +     +  +HG  S   +E  ++ F+
Sbjct: 564 FFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFR 623

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                +L+AT V+  GID+ D + +I  +         H++ GR GR  +          
Sbjct: 624 AKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRI-GRTGRAGKSGVATSFLTL 682

Query: 599 PLSKNSYTRLSVLKNTEDGF--LIAEEDLKQRKEGEI 633
             ++  Y    +L  +       +A  +  + K G +
Sbjct: 683 HDTEVFYDLKQMLVQSNSAVPPELARHEASRFKPGTV 719


>gi|149279609|ref|ZP_01885738.1| ATP-dependent RNA helicase [Pedobacter sp. BAL39]
 gi|149229645|gb|EDM35035.1| ATP-dependent RNA helicase [Pedobacter sp. BAL39]
          Length = 620

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 70/380 (18%), Positives = 133/380 (35%), Gaps = 35/380 (9%)

Query: 249 KEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
                 +          ++++ F  PT  QE +I  +L+     N  + + Q   G+GKT
Sbjct: 1   MINPFKLLGISDDVVNAVKDLGFENPTPIQEQSIPVLLEG---NNDFVGLAQ--TGTGKT 55

Query: 308 LVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAH 363
               + +   ++      QA+I+ P   L  Q    IK +++NT    V  + G      
Sbjct: 56  AAFGLPLLELIDFKSNKPQALILCPTRELCLQITNDIKNFSKNTSGANVVAVYGGANIMQ 115

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT 415
           + + +         I++ T     D I            ++L   DE    G Q+ +   
Sbjct: 116 QLREIRN----GVQIVVATPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQEDINDI 171

Query: 416 QKATAPH--VLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
              T       L +AT  P  R +    +       +  K  G   I+     +   D+ 
Sbjct: 172 LSTTPDDKKTWLFSATMPPEVRRIAKNYMDSPVELTMGTKNTGNVNIEHEYYTVRARDK- 230

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
              LK ++    + + +                +    L +    +   +HG +S   ++
Sbjct: 231 YAALKRIVDFNPEIFGVV------FCKTKMDTQDVAEHLIKDGY-NADALHGDLSQQQRD 283

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            VM  F++   +LLIAT V   GIDV + + +I  +      +  H+  GR GR  +   
Sbjct: 284 KVMQRFRDRHMQLLIATDVAARGIDVNNVTHVINYSLPDEIESYTHR-SGRTGRAGKTGI 342

Query: 592 CILLYHPPLSKNSYTRLSVL 611
            I + +            ++
Sbjct: 343 SICIVNSKEIGKIRQIERII 362


>gi|146313234|ref|YP_001178308.1| ATP-dependent RNA helicase DeaD [Enterobacter sp. 638]
 gi|145320110|gb|ABP62257.1| ATP-dependent RNA helicase CsdA [Enterobacter sp. 638]
          Length = 655

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 162/439 (36%), Gaps = 47/439 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LTDLGYEKPSPIQAECIPHLLSGRDV------LGMAQTGSGKTAAFSLPLLNNIDPELRA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E + +++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++           L+L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + D    +I      R  I      ++ + +    ++ + +E   A  I
Sbjct: 191 PEAIRRITRRFMKDPQEVRIQSSVTTRPDISQTFWSVHGMRKNEALVRFLEAEDFDAAII 250

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +LIAT
Sbjct: 251 FVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQSLREQTLERLKDGRLDILIAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 609 SVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
            ++K T     I E DL   +   +  +         +   +  + +  LL   +  A+ 
Sbjct: 362 RIMKLT-----IPEADLPNAELLGKRRLEKFAAKVQQQLESSDLDKYRELLTQIKPTAE- 415

Query: 666 ILTQDPDLTSVRGQSIRIL 684
              ++ D+ ++    +++ 
Sbjct: 416 --GEELDIETLAAALLKMA 432


>gi|21957415|gb|AAM84284.1|AE013672_2 inducible ATP-independent RNA helicase [Yersinia pestis KIM 10]
 gi|45435306|gb|AAS60865.1| inducible ATP-independent RNA helicase [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 669

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 149/415 (35%), Gaps = 49/415 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++A    
Sbjct: 27  LTDLGYEKPSPIQLECIPHLLNGRDV------LGMAQTGSGKTAAFGLPLLHNIKADLKS 80

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       +++
Sbjct: 81  PQVLVLAPTRELAVQVAEALSSFSKHINGVNVVALYGG----QRYDVQLRALRQGPQVVV 136

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 137 GTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATM 196

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +    V     + + ++  L+    +   
Sbjct: 197 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALVRFLEAEDFDAAI 256

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +               + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 257 IFV----------RTKNATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 306 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 364

Query: 605 YTRLSVLKNTEDGFLIAEEDL--KQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
                 +K T     +   DL  ++R       + Q    +   +  +++ +LL 
Sbjct: 365 QNIERTMKLTIPEVELPNADLLSERRLAKFAAKVSQ----QLESSDLDMYRALLA 415


>gi|153809380|ref|ZP_01962048.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185]
 gi|149127966|gb|EDM19188.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185]
          Length = 375

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 140/363 (38%), Gaps = 42/363 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---------AGGQ 323
           PT  QE AI   L       +   +     G+GKT    I +   ++          G +
Sbjct: 24  PTPIQEKAIPAALA------KRDILGCAQTGTGKTASFAIPIIQHLQVVSKESVKRQGIK 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  E I  Y++ T++   +I G + Q  +   L +       I++ T 
Sbjct: 78  ALILTPTRELALQISECIDDYSKYTRVRHGVIFGGVNQRPQVDMLRK----GIDILVATP 133

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D      I    +   ++DE  R      +   +       +L       +TL  +
Sbjct: 134 GRLLDLMNQGHIHLDTIQYFVLDEADRMLDMGFIHDIK------RILPKLPKEKQTLFFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I  +T K   + P+K  I P +   + I ++   + + +K+  +   +++ ++ 
Sbjct: 188 ATMPDTIVTLT-KSLLKNPVKIYITPKSSTVDSINQVVYFVEKKEKSQLLISILQKAEDQ 246

Query: 499 ------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +   ++   +          IHG  S   ++S + +FK+G  ++++AT +  
Sbjct: 247 SVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIAS 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+ +  ++I  +        +H++ GR GR     + +       S+     ++ ++
Sbjct: 307 RGIDISELPMVINYDLPDVPETYVHRI-GRTGRAGNTGTALTFC----SQEERKLVNDIQ 361

Query: 613 NTE 615
              
Sbjct: 362 KLT 364


>gi|126668612|ref|ZP_01739565.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter sp.
           ELB17]
 gi|126626942|gb|EAZ97586.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter sp.
           ELB17]
          Length = 457

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 93/463 (20%), Positives = 177/463 (38%), Gaps = 58/463 (12%)

Query: 262 AQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
            Q  L  + F  PT  Q  A+   L           I     GSGKT    I +   V+ 
Sbjct: 13  MQANLVRLGFTEPTDIQTRALPHCLAGQDV------IALAHTGSGKTAAFGIGLIEHVKP 66

Query: 321 GG---QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                Q++++ P   LA Q  + +++  +    I +  + G +    +  +L       A
Sbjct: 67  KQFSVQSLVLCPTRELADQVAKALRELARARDNIKILTLCGGVSIGPQIGSLAH----GA 122

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           HI++GT     D +Q   L L  V         + L +  +    ++L   A    +TL+
Sbjct: 123 HIVVGTPGRIADHLQKGTLKLDRVHTVVLDEADRMLDMGFQEAVENIL-SHAPAQRQTLL 181

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     I K++     R+P+  V     +++  I  +   +S  ++   I   + + +
Sbjct: 182 FSATWPESIRKLSA-GFQREPVD-VRAQTEKMNSDIAEVFYEISGNQRTRAIVALLSQHQ 239

Query: 497 E------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +   +   +       S   +HG +   D++SV+  F N +C++L+AT V
Sbjct: 240 PTSCLVFCAMKHQCDELAAELSQQGFSALALHGDLEQRDRDSVLVRFANQSCQVLVATDV 299

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLR-GRVGRGEEISSCILLYHP----------- 598
              G+D+   S+ ++ NAE  G  ++H  R GR GR  E    + L  P           
Sbjct: 300 AARGLDIK--SLPLVVNAEPAGDPEIHTHRIGRTGRAGEQGLAVTLCSPSQGHKINRLES 357

Query: 599 ------------PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG--IKQSGMPKF 644
                       PL       +  L  T     IA    ++ + G+++G      G+P  
Sbjct: 358 ERGATVIWGDSDPLMATVPKPMKPLMKT---LCIAAGRKEKLRPGDVMGALTGDGGLPGS 414

Query: 645 LIAQPELHDS--LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            + +  + +    + +  + A   L Q  +   V+G+++R  L
Sbjct: 415 AVGKINVFEFQCFVAVESRHAGRALEQL-ERGKVKGRNLRARL 456


>gi|227485114|ref|ZP_03915430.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236947|gb|EEI86962.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 550

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 82/362 (22%), Positives = 136/362 (37%), Gaps = 42/362 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
           SP+  QE  I  +L           I Q   G+GKT    I +   +EA G  QA+++ P
Sbjct: 37  SPSPIQEETIPPLLDGKDV------IGQAQTGTGKTAAFAIPIIEKIEANGLTQALVLCP 90

Query: 330 IGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              L  Q  + I    + +T I +  + G      + KAL++       I++GT     D
Sbjct: 91  TRELCIQVAKEIGNLAKYHTGIKILSVYGGTQIVKQIKALKK----GVEIVVGTPGRLMD 146

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLT 438
            ++   L L  +        DE    G +  +K    AT         +AT         
Sbjct: 147 LMRRRVLKLDNLKIVVLDEADEMFDMGFRDDMKFILDATNDDRQTCFFSATMGKEI---- 202

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-- 496
                + SKI +K      IK   + +N+ID+      + L E  K   +   +E  K  
Sbjct: 203 ----SEFSKIYQKNPVTIKIKAKELTVNKIDQ----HFIKLKEADKEETLTRLLEINKPR 254

Query: 497 -ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F +   + + L E  +     +  +HG +    ++ VM  F+N T  +L+AT V  
Sbjct: 255 LAIIFCNTKRKVDKLVESLSKKSYLVDGLHGDLKQTQRDIVMKKFRNNTIDILVATDVAA 314

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV D  ++I  +        +H++ GR  R         L     ++         K
Sbjct: 315 RGLDVDDVDMVINYDLPQLDEYYVHRI-GRTARAGRSGLSYSLISGRDNERLKAIEKYTK 373

Query: 613 NT 614
            T
Sbjct: 374 AT 375


>gi|229820496|ref|YP_002882022.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
 gi|229566409|gb|ACQ80260.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
           12333]
          Length = 589

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 134/359 (37%), Gaps = 36/359 (10%)

Query: 269 IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQA 324
           + F+ PT  Q +AI  +L           +     G+GKT    + + AAV+   A  QA
Sbjct: 38  LGFTTPTPIQTAAIPALLSGRD------LVGVAQTGTGKTAAFGLPLLAAVDPQLAAVQA 91

Query: 325 VIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q              + V  I G      + + LER     A +++GT 
Sbjct: 92  LVLTPTRELAIQVSDAVASFVPSGAGVKVLPIYGGASFVPQLRGLER----GAQVVVGTP 147

Query: 384 ALFQDSIQY--------YKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT--PI 431
               D ++           L+L   DE  R G  + +   L +      V L +AT  P 
Sbjct: 148 GRVIDLLERGSLDLDALRYLVLDEADEMLRMGFAEDVDVILAKTPATKQVALFSATMPPP 207

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R +  T L + +   +  +      +      +   ++     +V+ +    A  +  +
Sbjct: 208 IRKVAETHLRNPEEIAVARQATPIAAVTQTYAIVPYRNKAEALSRVLATSDADAAIVFVR 267

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
             E  E    ++  R          + A I G ++  ++E +++  ++G   +L+AT V 
Sbjct: 268 TRETAEEVGTALASR--------GINAASISGDVAQRERERIVERLRSGALDVLVATDVA 319

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
             G+DV    +++  +        +H++ GR GR     + +    P       T   V
Sbjct: 320 ARGLDVERIGLVVNFDVPREVETYVHRI-GRTGRAGRTGNALTFLTPKEKPRLRTIERV 377


>gi|213406593|ref|XP_002174068.1| ATP-dependent RNA helicase, eIF4A related [Schizosaccharomyces
           japonicus yFS275]
 gi|212002115|gb|EEB07775.1| ATP-dependent RNA helicase, eIF4A related [Schizosaccharomyces
           japonicus yFS275]
          Length = 394

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 133/372 (35%), Gaps = 39/372 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q  AI  I +          I Q   G+GKT    I +  +++      QA+I++
Sbjct: 43  TPSAIQSRAITQICKGRDV------IAQAQSGTGKTATFSIGILQSIDLSVRETQALILS 96

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +     +  +      G     +  K L+       H++ GT     D
Sbjct: 97  PTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQ----HVVSGTPGRVTD 152

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+           L+L   DE    G + ++    +            P  + +V+++ 
Sbjct: 153 MIRRRNLRVRNVKMLVLDEADELLNRGFKDQIYDIYRYLP---------PGTQVVVVSAT 203

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+ ++T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 204 LPQDVLELTNKF-TTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQ 262

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           ++  +HG M   +++++M  F+ G  ++L+ T +   
Sbjct: 263 AVIFCNSRRKVDWLAEKMREANFTVTSMHGEMPQKERDAIMQEFRQGHSRVLLCTDIWAR 322

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GIDV   S++I  +        +H++ GR GR       I        +           
Sbjct: 323 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTNDDVRILRDIEQYYST 381

Query: 614 TEDGFLIAEEDL 625
             D   I   D+
Sbjct: 382 VIDEMPINIGDM 393


>gi|190891857|ref|YP_001978399.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
 gi|190697136|gb|ACE91221.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
          Length = 651

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 87/457 (19%), Positives = 169/457 (36%), Gaps = 70/457 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
             T  Q+S +     D++       ++    GSGKT+   +A+A  +  G          
Sbjct: 22  ELTPVQKSMLDP---DLAAS---DALVSAQTGSGKTVAFGLALAPTLLEGSERFGNAGAP 75

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    ++   + T  ++    G M     R+ALER     AHI++GT
Sbjct: 76  LALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRALER----GAHIVVGT 131

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I+   L        +L   DE    G ++ L+           L +A    RT
Sbjct: 132 PGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFI---------LDSAPDERRT 182

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I+K+  K   R  ++       +    IE   ++++   +   I   +  
Sbjct: 183 LMFSATVPAAIAKLA-KSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLRY 241

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            + +N       R+ V    +   +   S+  + G ++  ++   + + ++G  ++ IAT
Sbjct: 242 YEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+    ++I  +        LH+  GR GR        ++       N+  + 
Sbjct: 302 DVAARGIDLPGLDLVIHADLPTNPETLLHR-SGRTGRAGRKGISAMIVP----LNARRKA 356

Query: 609 SVLKNTEDGFLIA------EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
             L     G   A       E++ +R +  +L            A P  HD+  E  +  
Sbjct: 357 ERLLE-NAGISAAWERPPSAEEVNERDDERLL------------ADPIFHDAPQEEEQGL 403

Query: 663 AKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRA 699
            + +L       + +  +  + LY   ++     I  
Sbjct: 404 VQQLLASH---GAEKLAAAFLRLYRTNHSAPEDLIEV 437


>gi|161784286|sp|Q5ACU6|RRP3_CANAL RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 539

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 127/341 (37%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMA 328
            PT  Q  AI   L+          I     GSGKT    I +  ++    Q   A+++A
Sbjct: 145 KPTPIQSEAIPHALEGKD------IIGLAQTGSGKTAAFAIPILQSLWHAQQPYFALVLA 198

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L  Q  +       +  +    I G M    + + L R    + H+I+ T     D
Sbjct: 199 PTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMR----KPHVIVATPGRIMD 254

Query: 389 SIQY------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            +++        L  +++DE  R           K       ++   PI RT  L S   
Sbjct: 255 HLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDK-------ILKVIPIKRTTYLFSATM 307

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------ 496
            +  +  ++ +   P++  +    +  + + +  +++++G K   +   + E        
Sbjct: 308 TNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSIIV 367

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +   +  +R   L      +   +HG++S   +   ++ FK+    +L+AT V   G+D
Sbjct: 368 FTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLD 427

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +    ++I  +      A +H++ GR  R       I L  
Sbjct: 428 IPSVDVVINYDIPTDSKAYIHRV-GRTARAGRSGKSISLIT 467


>gi|88799091|ref|ZP_01114671.1| DEAD/DEAH box helicase-like protein [Reinekea sp. MED297]
 gi|88778074|gb|EAR09269.1| DEAD/DEAH box helicase-like protein [Reinekea sp. MED297]
          Length = 579

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 72/365 (19%), Positives = 138/365 (37%), Gaps = 36/365 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L ++ +  PT  Q  AI  +L      N +L + Q   G+GKT    + + + ++     
Sbjct: 20  LDSLGYETPTPIQSQAIVQLLDG----NDVLGLAQ--TGTGKTAAFSLPLLSRIDTTKNK 73

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  E  + Y +       + I G     ++ +AL++       +I+
Sbjct: 74  PQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLRALKQ----NPQVIV 129

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATP 430
           GT     D ++           L+L   DE  R G  + +    + T       L +AT 
Sbjct: 130 GTPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKDKQTALFSATM 189

Query: 431 IPRTLVLTSLGDIDISKITEKPA--GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
             +   +T     D  KI  K +    + I+ ++     +D++    +++  E   A  I
Sbjct: 190 PHQIKRITDQYQKDPVKIEIKASHSELQQIEQLVWRARGLDKLDGLTRILEIEDWNAIII 249

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +         R   +  +        +   + G ++   +E ++ + K G   ++IAT
Sbjct: 250 FVRT--------RVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDIIIAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+   + +I  +         H++ GR GR       IL   P   +      
Sbjct: 302 DVAARGIDIERITHVINWDIPGDVSTYTHRI-GRTGRAGRSGKAILFCKPREQRIIRDIE 360

Query: 609 SVLKN 613
              K+
Sbjct: 361 RATKS 365


>gi|320589959|gb|EFX02415.1| eukaryotic initiation factor 4a-12 [Grosmannia clavigera kw1407]
          Length = 403

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 126/345 (36%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +P+  Q  AI  + +          I Q   G+GKT    I+M   +       QA++++
Sbjct: 51  TPSAVQSRAIVQVCKGRDT------IAQAQSGTGKTATFSISMLQVINTASRETQALVLS 104

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +K       +      G        + L++      HI+ GT     D
Sbjct: 105 PTRELATQIQSVVKALGDYMNVQCHACIGGTNVGEDIRKLDQGQ----HIVSGTPGRVAD 160

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V++++AT     L +T
Sbjct: 161 MIRRRHLRTRNIKMLVLDEADELLNQGFREQIYEVYRYLPPATQVVVVSATLPQDVLEMT 220

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
                D  +I  K      + +K   I + + +   + L  +       +A   C     
Sbjct: 221 YKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNT--- 277

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R  V+           +++ +HG M   +++S+M  F+    ++LI+T V   G
Sbjct: 278 ------RRKVDWLTDKMRESNFTVSSMHGDMPQKERDSIMQDFRQFNTRVLISTDVWARG 331

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           IDV   S++I  +        +H++ GR GR       I      
Sbjct: 332 IDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTNE 375


>gi|170766108|ref|ZP_02900919.1| cold-shock DEAD box protein A [Escherichia albertii TW07627]
 gi|170125254|gb|EDS94185.1| cold-shock DEAD box protein A [Escherichia albertii TW07627]
          Length = 627

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 167/441 (37%), Gaps = 51/441 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIA-EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDA 663
                 +K T     +   E L +R+  +     Q    +   +  + + +LL   +  A
Sbjct: 358 RNIERTMKLTIPEVELPNAELLSKRRLEKFAAKVQ---QQLESSDLDQYRALLSKIQPTA 414

Query: 664 KHILTQDPDLTSVRGQSIRIL 684
           +    ++ DL ++    ++++
Sbjct: 415 E---GEELDLETLAAALLKMV 432


>gi|148261622|ref|YP_001235749.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146403303|gb|ABQ31830.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
          Length = 525

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 149/412 (36%), Gaps = 31/412 (7%)

Query: 205 AFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEG---KI 261
           A     +P     F        RL Y+       A    R + +  +       G    +
Sbjct: 10  AAPWRRHPPAGA-FHAGRAPSGRLVYEASCHPCAAPSHRRSRDESAVLTDFTTLGLAEPL 68

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
            + I      +PT  Q  +I  +L+     + ++ I Q   G+GKT   ++ +   + A 
Sbjct: 69  LRAISEQSYETPTPIQARSIPVMLEG----HDLVGIAQ--TGTGKTAAFVLPILHRIAAN 122

Query: 322 G--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                    +A+++AP   LA Q  +  + Y + T+  V ++ G      +     R   
Sbjct: 123 RARPAPRACRALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKPGPQ----ARRME 178

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
               +++ T     D +    + L  V+        Q L L        +  M   P  R
Sbjct: 179 SGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQI--MAKLPRQR 236

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL---SEGKKAYWICP 490
             V+ S       +       R P +  +   ++  + I++  ++L    +  K  W+  
Sbjct: 237 QAVMFSATMPKPIRALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAPEEKKDKLAWLLA 296

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +  ++   F       + +  H   +    A IHG  S   +E  +D F++G  ++L+A
Sbjct: 297 DVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRVLVA 356

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           T +   GIDV + S ++     +   + +H++ GR  R       I L  P 
Sbjct: 357 TDIAARGIDVDNVSHVVNFELPNVPESYVHRI-GRTARAGAEGVAISLVEPS 407


>gi|327399574|ref|YP_004340443.1| DEAD/DEAH box helicase domain-containing protein [Hippea maritima
           DSM 10411]
 gi|327182203|gb|AEA34384.1| DEAD/DEAH box helicase domain protein [Hippea maritima DSM 10411]
          Length = 526

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 124/343 (36%), Gaps = 36/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE  I  ILQ     +    + +   G+GKTL   + +   ++      QAVI+A
Sbjct: 27  KPTPIQEKVIPLILQ-----SSKDLVAEAPTGTGKTLAFGLPLIDLLKEKTGYVQAVILA 81

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I  +    ++    I G      +++ L+        I++GT     D
Sbjct: 82  PTRELAIQVCDEINAFKGKKRLKAFPIYGGQSIELQKRRLKE----GVDIVVGTAGRIID 137

Query: 389 SIQYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT--LV 436
            I    L        IL   DE    G     +  LT      ++ + +AT       L 
Sbjct: 138 HINRKTLNLSKIDYFILDEADEMLNMGFIDDIKEILTHTNPTKNMFMFSATMPEEIKRLA 197

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              +   +  +I +       I   +   ++ + +      V  E       C    + +
Sbjct: 198 KQYMKKPEFVRIEKSKMLTSQIYFEVKEQDKFEALCRIRDAV--EDFYGLIFCKTKVDAQ 255

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               + +   +             IHG +S   +E ++  F++    +L+AT V   GID
Sbjct: 256 NVANKLIDRGY---------YADAIHGDLSQDKRERILKRFRDKKINMLVATDVAARGID 306

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +   + +I  +      + +H++ GR GR ++    I    P 
Sbjct: 307 IDGLTHVINYSMPQDAESYIHRI-GRTGRAQKKGIAITFVSPS 348


>gi|223997538|ref|XP_002288442.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220975550|gb|EED93878.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 421

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 137/382 (35%), Gaps = 52/382 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----------G 322
           P+  Q      +LQ  S+      +   + GSGKTL   +   + +              
Sbjct: 4   PSPIQAQCWPVLLQTDSKGRHCDVVGIAETGSGKTLAFSMPALSIMAKDSSSTNNRGRSP 63

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           + +++AP   LA Q  + ++++ +   +   +I G +P+  ++  L +        I+ T
Sbjct: 64  RMLVLAPTRELAMQSQKVLEEFGKVVNLSSLVIYGGVPKPAQKDILRK----GVDCIVCT 119

Query: 383 HALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLT----QKATAPHVLLMTATP 430
               +D +            L+L   D     G ++ ++      ++       + +AT 
Sbjct: 120 PGRLKDLVNEGSCDLSNISHLVLDEADRMLDMGFEEDVRYIISQCKEKEQRQTAMFSATW 179

Query: 431 I--PRTLVLTSLGDIDIS--------------KITEKPAGRKPIKT---VIIPINRIDEV 471
               + L L  + +                   I +  +  K +     VI    R + +
Sbjct: 180 PAAIQQLALEFMMEPICIYVGFESIVGSNGENSIDDSLSANKRVSQTVEVIEDRAREERL 239

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
            E +K      +K   I      KKE+       R       +  S A IHG  +   + 
Sbjct: 240 RELIKKYTGGKRKNDRILVFALYKKEA------ARIEGTLNRWGFSCASIHGDKTQDARN 293

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             +  FK+G+C +L+AT V   G+D+ D  +++           +H++ GR GR  +   
Sbjct: 294 RALAEFKDGSCPILVATDVAARGLDIPDVEVVLNYTFPLTIEDYVHRI-GRTGRAGKSGI 352

Query: 592 CILLYHPPLSKNSYTRLSVLKN 613
               + P    ++     V++ 
Sbjct: 353 SYTFFQPGDKSHAGELQQVMRQ 374


>gi|168235783|ref|ZP_02660841.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168819458|ref|ZP_02831458.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194736572|ref|YP_002114683.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712074|gb|ACF91295.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291228|gb|EDY30581.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|205343740|gb|EDZ30504.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320085851|emb|CBY95627.1| ATP-dependent RNA helicase DBP2 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 457

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 80/458 (17%), Positives = 167/458 (36%), Gaps = 58/458 (12%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVTLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKETVSLDAL-HILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   ++PI+  I  ++ +   IE+     S  +K   +   + + +    
Sbjct: 187 WPDAIAAISGR-VQQQPIRIEIDTVDALP-AIEQQFFETSAHEKISLLQTLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+  
Sbjct: 305 LDIKSLELVVNYELAWDPEVHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQLK 363

Query: 615 EDGF-LIAEEDL------------------KQRKEGEILGIKQSGMPKFLIAQP------ 649
            +     A + L                  K R  G+ILG   +G      A        
Sbjct: 364 LNWLNAPARQSLLPLAAEMATLCIDGGKKAKMR-PGDILGAL-TGDIGLDGADIGKINVH 421

Query: 650 --ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
              ++ ++ +   + A   L        ++G+S R+ L
Sbjct: 422 PMHVYVAVRQAVAQKAWKQLQN----GKIKGKSCRVRL 455


>gi|322795370|gb|EFZ18163.1| hypothetical protein SINV_10215 [Solenopsis invicta]
          Length = 410

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 78/400 (19%), Positives = 146/400 (36%), Gaps = 37/400 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMA 328
            PT+ Q+ AI   LQ          I   + GSGKT    + +  A+    Q   A+I+ 
Sbjct: 17  EPTRIQQEAIPLTLQGKDV------IGLAETGSGKTAAFALPILQALLEQPQRYFALILT 70

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E       +  +   ++ G M    +   LE+    + HIII T     D
Sbjct: 71  PTRELAFQISEQFDALGSSMGVKTVVLVGGMDMHAQGMILEK----KPHIIIATPGRLVD 126

Query: 389 SIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            ++        +L  +++DE        R+           +L       RTL+ ++   
Sbjct: 127 HLENTKGFNLRQLKFLVMDEAD------RILNMDFEVEVDKILRVIPRERRTLLFSATMT 180

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE------KK 496
             + K+ ++ + R P++  +    +  E +++  + +    K  ++   + E        
Sbjct: 181 KKVQKL-QRASLRNPVRVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNSFMI 239

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                +   R   L  +   +   +HG+MS   + + +  FK     +LI+T V   G+D
Sbjct: 240 FCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRGLD 299

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +    I+I  +        +H++ GR  R       I        +       ++     
Sbjct: 300 IPHVDIVINFDIPTHSKDYIHRV-GRTARAGRSGRSITFVTQYDVELYQRIEQLISKQLP 358

Query: 617 GFLIAEED---LKQRKEGEILGIKQSGMPKFLIAQPELHD 653
            +   EE+   L++R    I   K+SG  K      E  D
Sbjct: 359 LYPTEEEEVMLLQERDMKNIEENKKSGKRK-RGGNNEDDD 397


>gi|322494127|emb|CBZ29424.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 622

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 137/375 (36%), Gaps = 50/375 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+  I  +L           +     GSGKT   LI     +             
Sbjct: 163 KPTPVQKYGIPCVLNG------SDLMACAQTGSGKTAAYLIPAINFMLVNNLNRSKPTNS 216

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           ++   A++++P   L+ Q YE  +K+T  T I   ++ G     H+   L R       +
Sbjct: 217 QSAPSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRHQIHELTR----GCGL 272

Query: 379 IIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLK--------LTQKATAPH 422
           ++ T     D              L+L   D     G + +++                 
Sbjct: 273 LVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPDSDMPPPGERQ 332

Query: 423 VLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            LL +AT     + +    L      ++    +  + I   +  +  +D+      + + 
Sbjct: 333 TLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVEDVDK--RGCLLEVL 390

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           +  +   +   +E+K+++++                  + IHG     ++E  +D FK+G
Sbjct: 391 KEHQGERVLVFVEKKRDADY------LERYLRQSRIPCSSIHGDRVQREREEALDIFKSG 444

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
            C++L+AT V   G+D+ + ++++  +        +H++ GR GR  +  + +  ++   
Sbjct: 445 VCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRI-GRTGRAGKRGTALSFFNDKN 503

Query: 601 SKNSYTRLSVLKNTE 615
                  + +L+ T 
Sbjct: 504 RNIVDDLIPLLRETN 518


>gi|319648702|ref|ZP_08002913.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
 gi|317389121|gb|EFV69937.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
          Length = 516

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 81/433 (18%), Positives = 152/433 (35%), Gaps = 44/433 (10%)

Query: 269 IPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQA 324
           + F   T  Q   I   L +         I Q   G+GKT    I +   +       QA
Sbjct: 1   MGFEEATPIQAQTIPLGLANKDV------IGQAQTGTGKTAAFGIPLVEKINPESPNIQA 54

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++AP   LA Q  E + K  Q+ +  V  I G      + +AL++      HII+GT  
Sbjct: 55  IVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKK----NPHIIVGTPG 110

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT---PI 431
              D I            ++L   DE    G  + +   L+        LL +AT   PI
Sbjct: 111 RLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPI 170

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R +    + + +  K+  K      I+   + ++   +     +++  +  +   +  +
Sbjct: 171 KR-IAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQSPELAIVFGR 229

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +  V+           +   IHG ++   +   +  FK G  ++L+AT V 
Sbjct: 230 T--------KRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVA 281

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+   + +   +      + +H++ GR GR  +    +    P             
Sbjct: 282 ARGLDISGVTHVYNFDVPQDPESYVHRI-GRTGRAGKTGMAMTFITPREKDMLRAIEQTT 340

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPEL--HDSLLE-----IARKDAK 664
           K   D       D     + ++   +   + +       +     LLE          A 
Sbjct: 341 KRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAELLEDHDSVTVVAAAI 400

Query: 665 HILTQDPDLTSVR 677
            ++T++PD T VR
Sbjct: 401 KMMTKEPDNTPVR 413


>gi|256273812|gb|EEU08734.1| Dbp2p [Saccharomyces cerevisiae JAY291]
          Length = 547

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 132/369 (35%), Gaps = 44/369 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L        M+ I     GSGKTL   +     + A        G  
Sbjct: 135 KPTGIQCQGWPMAL----SGRDMVGI--AATGSGKTLSYCLPGIVHINAQPLLAPGDGPI 188

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q      K+  +++I    + G +P++ + + L R +     I+I T 
Sbjct: 189 VLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSE----IVIATP 244

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 245 GRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 304

Query: 434 TLVLTSLGDIDISKI------TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              L +    D  ++               I  V+    + D + + L+    + +    
Sbjct: 305 VKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTL 364

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I         S  R   +    L E    ++AI HG     +++ V+  F+NG   +++A
Sbjct: 365 IF-------ASTKRMCDDITKYLREDGWPALAI-HGDKDQRERDWVLQEFRNGRSPIMVA 416

Query: 548 TTVIEVGI-DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           T V   GI +V   + +I  +        +H++ GR GR     + I  +          
Sbjct: 417 TDVAARGIGNVKGINYVINYDMPGNIEDYVHRI-GRTGRAGATGTAISFFTEQNKGLGAK 475

Query: 607 RLSVLKNTE 615
            +S+++   
Sbjct: 476 LISIMREAN 484


>gi|62180220|ref|YP_216637.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224583853|ref|YP_002637651.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238911959|ref|ZP_04655796.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|62127853|gb|AAX65556.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|224468380|gb|ACN46210.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|322714692|gb|EFZ06263.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 457

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 80/458 (17%), Positives = 167/458 (36%), Gaps = 58/458 (12%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVTLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKETVSLDAL-HILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   ++PI+  I  ++ +   IE+     S  +K   +   + + +    
Sbjct: 187 WPEAIAAISGR-VQQQPIRIEIDTVDALP-AIEQQFFETSAHEKISLLQTLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+  
Sbjct: 305 LDIKSLELVVNYELAWDPEVHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQLK 363

Query: 615 EDGF-LIAEEDL------------------KQRKEGEILGIKQSGMPKFLIAQP------ 649
            +     A + L                  K R  G+ILG   +G      A        
Sbjct: 364 LNWLNAPARQSLLPLAAEMATLCIDGGKKAKMR-PGDILGAL-TGDIGLDGADIGKINVH 421

Query: 650 --ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
              ++ ++ +   + A   L        ++G+S R+ L
Sbjct: 422 PMHVYVAVRQAVAQKAWKQLQN----GKIKGKSCRVRL 455


>gi|307245436|ref|ZP_07527524.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247549|ref|ZP_07529593.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307254390|ref|ZP_07536228.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256597|ref|ZP_07538378.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258849|ref|ZP_07540581.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307261031|ref|ZP_07542713.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307263212|ref|ZP_07544832.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306853777|gb|EFM85994.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306855914|gb|EFM88073.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306862689|gb|EFM94645.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865007|gb|EFM96909.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867200|gb|EFM99056.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869333|gb|EFN01128.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306871429|gb|EFN03153.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 593

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 84/417 (20%), Positives = 150/417 (35%), Gaps = 40/417 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q+  I  +L           +     GSGKT    + + A ++      Q ++MA
Sbjct: 2   TPSPIQQETIPHLLAGRDV------LGMAQTGSGKTAAFSLPLLAQIDPTKRHPQMLVMA 55

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +  +++T+N   + V  + G      R     R     + +++GT     
Sbjct: 56  PTRELAIQVADACEQFTKNMKGVNVVTVYGG----QRYDIQLRALKQGSQVVVGTPGRIL 111

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-PIP-RTL 435
           D I+   L        +L   DE  R G    ++  + +        L +AT P P R +
Sbjct: 112 DHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRI 171

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               + D    KI         I      +N   +    L+ +  E   A  I  + +  
Sbjct: 172 TRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTG 231

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                         L E      A ++G M+   +E  +D  K+G   +L+AT V   GI
Sbjct: 232 TID--------ITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGI 283

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+   S+++  +      + +H++ GR GR       +L   P   +       ++K   
Sbjct: 284 DIERISLVVNFDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPI 342

Query: 616 DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE---IARKDAKHILTQ 669
           D   I   ++   K  E    + S   +      E +  LLE    A +D + +   
Sbjct: 343 DEVAIPNHEILMAKRREKFKARVS--KQLEHHDLEKYRELLEDLFTADQDHEELAAA 397


>gi|209809226|ref|YP_002264764.1| putative ATP-dependent RNA helicase 1 [Aliivibrio salmonicida
           LFI1238]
 gi|208010788|emb|CAQ81183.1| putative ATP-dependent RNA helicase 1 [Aliivibrio salmonicida
           LFI1238]
          Length = 418

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 129/370 (34%), Gaps = 34/370 (9%)

Query: 264 KILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
            I+  + F+  T  Q+ AI  +L+          +     G+GKT    + +   +    
Sbjct: 14  NIVSELGFTEATPVQQQAIPLVLKGHDV------LAGAQTGTGKTAAFGLPLIQRLIESP 67

Query: 323 ----------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                     + +I+ P   LAQQ ++ +  YT+NT +   +  G      + + L    
Sbjct: 68  SPRIANSKVIRTLILTPTRELAQQVFDSLVTYTKNTDLKCVVAYGGTSVKIQTENL---- 123

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            G A I++ T     D +    + L    E        R+           +L       
Sbjct: 124 IGGADILVATPGRLLDHLHLNNITLNQA-EYLVLDEADRMLDMGFMPDIQRILRKMASKH 182

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL  ++     I +I  +      +   + P N   + +E++   + + +K+  +   I
Sbjct: 183 QTLFFSATFGDKIKEIAYRILDNPKVVQ-VTPSNSTADTVEQMVYPVDKHRKSELLAYLI 241

Query: 493 EEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             +           +   +      +      A I+G  S   +   ++ FK G  + LI
Sbjct: 242 GSRNWKQVLVFTKTKQGSDDLVKELKLDGIKAASINGDKSQGARIRALEEFKTGKIRALI 301

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+     +I           +H++ GR GR       + L    +S +   
Sbjct: 302 ATDVAARGLDIEQLECVINYELPFKAEDYVHRI-GRTGRAGHTGKAVSL----MSADEDY 356

Query: 607 RLSVLKNTED 616
            L  ++   D
Sbjct: 357 LLKAIETLLD 366


>gi|116252251|ref|YP_768089.1| cold-shock DEAD-box protein A (ATP-dependent RNA helicase DEAD)
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256899|emb|CAK07993.1| putative cold-shock DEAD-box protein A (ATP-dependent RNA helicase
           DEAD) [Rhizobium leguminosarum bv. viciae 3841]
          Length = 651

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 130/350 (37%), Gaps = 46/350 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
             T  Q++ +   L           ++    GSGKT+   +A+A  +  G +        
Sbjct: 22  ELTPVQKAMLDPALA------ASDALVSAQTGSGKTVAFGLALAPTLLEGRERFGNAGAP 75

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    ++   + T  ++    G M     R++LER     AHI++GT
Sbjct: 76  LALVIAPTRELALQVKRELEWLFEMTGAVIVSCVGGMDIRSERRSLER----GAHIVVGT 131

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP 432
                D I+   L        +L   DE    G ++ L+            L+ +AT   
Sbjct: 132 PGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDAAPDERRTLMFSATVPA 191

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTV-----IIPINRIDEVIERLKVVLSEGKKAYW 487
               L      D  +I+     ++ I        + P +R + +I  L+    E   A  
Sbjct: 192 AIAKLAKSYQRDAVRISTAAEEKQHIDIEYRALMVAPSDRENAIINVLRY--YEATNAIV 249

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C           R+ V    +   +   ++  + G ++  ++   + + ++G  ++ IA
Sbjct: 250 FCST---------RAAVNHLTARFNNRNFAVVALSGELTQNERTHALQAMRDGRARVCIA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           T V   GID+    ++I  +        LH+  GR GR        ++  
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGISAMIVP 349


>gi|332244020|ref|XP_003271168.1| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Nomascus
           leucogenys]
          Length = 649

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 126/365 (34%), Gaps = 39/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  A   +LQ +        I     G+GKTL  L+     ++            
Sbjct: 265 KPTPIQSQAWPIVLQGID------LIGVAQTGTGKTLCYLMPGFIHLDLQPTLKGQRNRP 318

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++ P   LA Q      KY+    +    + G   +  + + L +       III T
Sbjct: 319 GMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIEELRK----GVDIIIAT 373

Query: 383 HALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      +    +  +++DE  +           K      +L+   P  +T++ 
Sbjct: 374 PGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMK------ILLDVRPDRQTVMT 427

Query: 438 TSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           ++     + ++ +       I  V    ++ ++ + + I              ++     
Sbjct: 428 SATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQNMSS 487

Query: 494 EKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             K   F S     + L         SI  +HG     D+E  +++FK G  ++LIAT +
Sbjct: 488 TDKVIVFVSRKAVVDHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVRILIATDL 547

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D + +   +        +H++ GR GR       I        + +   +++
Sbjct: 548 ASRGLDVHDVTHVYNFDFPRNIEEYVHRI-GRTGRAGRTGVSITTLTRNDWRVASELINI 606

Query: 611 LKNTE 615
           L+   
Sbjct: 607 LERAN 611


>gi|315127484|ref|YP_004069487.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315015998|gb|ADT69336.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 415

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 135/375 (36%), Gaps = 45/375 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--------GQ 323
           +PT  Q   I  IL           +     G+GKT   ++ +   +            +
Sbjct: 26  TPTAIQHKTIPPILAGKDV------MGSAQTGTGKTAAFVLPLLHKLLNTTKKDEPGIAR 79

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            VI+ P   LAQQ +   +KY Q T I   +  G      + KAL+      A +I+ T 
Sbjct: 80  VVILTPTRELAQQVFASFEKYAQGTDIKGALAYGGASIGPQIKALK-----TAQVIVATP 134

Query: 384 ALFQDSIQYYKLILVIVD--------EQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D I    ++L  VD             G   + R  L         LL +AT    
Sbjct: 135 GRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIRRILRHIPGDRQTLLFSATFDDS 194

Query: 434 T--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L    L D ++ ++ ++ +    ++ VI  ++   +      ++  +  +   I  +
Sbjct: 195 VFELSKKLLKDPELIEVDKRNSAAVEVEQVIYAVDEDRKRELVSHMIGMKNWRQVLIFTR 254

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    + + ++              IHG  S   ++  + +FK G+ ++L+AT V 
Sbjct: 255 T--------KQMADKLAKEMCKDGLKTESIHGDKSQGARDRALHNFKEGSTRVLVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     +I     +     +H++ GR GR  E    + L            + VL
Sbjct: 307 ARGLDIPALKYVINFELPYIAEDYVHRI-GRTGRAGEQGLAMSLVSLDEQWL-LEEIEVL 364

Query: 612 KNTEDGFLIAEEDLK 626
            +T     +A + L+
Sbjct: 365 LDT----RLAPQWLE 375


>gi|293373074|ref|ZP_06619442.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
 gi|292631960|gb|EFF50570.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
          Length = 422

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 132/372 (35%), Gaps = 43/372 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE AI  IL+          I     G+GKT   L+ +   +  G         VIM
Sbjct: 25  TPIQEQAIPIILEGKD------LIAVAQTGTGKTAAFLLPVLNKLSEGKHPEDAINCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ ++    +    + G        +  + +  G A ++I T     
Sbjct: 79  SPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLTLG-ADVVIATPGRLI 137

Query: 388 DS-----IQYYKLILVIVDE---QHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVL 437
                  +   K+   I+DE       G  + +             ++ +AT   +   L
Sbjct: 138 AHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKERQTIMFSATMPAKIQQL 197

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +    + S+I  KPA  KP            E I +   V  E +K   I     ++  
Sbjct: 198 ANTILNNPSEI--KPAVSKP-----------AEKIIQAAYVCYENQKLGIIRSLFMDEVP 244

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +  V+      +    ++  +H  +    +E+VM  FK G   +L+AT ++
Sbjct: 245 ERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDIV 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ D  ++I  +  H     +H++ GR  R       +         N  +  + L
Sbjct: 305 ARGIDIDDIRLVINFDVPHDSEDYVHRI-GRTARANNDGVALTFISEKEQSNFKSIENFL 363

Query: 612 KNTEDGFLIAEE 623
           +       I EE
Sbjct: 364 EKEIYKIPIPEE 375


>gi|260800277|ref|XP_002595060.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae]
 gi|229280302|gb|EEN51071.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae]
          Length = 875

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 68/385 (17%), Positives = 131/385 (34%), Gaps = 45/385 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              + ++  +I ++    PT  Q   I   L           I     GSGKT   +  M
Sbjct: 241 FGFDEQLLHQIRKSEYSQPTPIQAQGIPVALSGRD------IIGIAKTGSGKTAAFVWPM 294

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G   +I AP   L+QQ Y   K++ +   + V    G      + K
Sbjct: 295 LVHIMDQKELEPGDGPIGLICAPTRELSQQIYAEAKRFGKCYGLSVVAAYGGGSMWEQTK 354

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKA 418
           AL+      A I++ T     D ++           L+    D     G + +++     
Sbjct: 355 ALQL----GAEIVVCTPGRLIDLVKKKATNLQRVTYLVFDEADRMFDMGFEPQVRSIANH 410

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                      P  +TL+ ++     I ++  +     PIK V   +   +E ++++  +
Sbjct: 411 VR---------PDRQTLLFSATFKKRIERLC-RDILMDPIKVVQGDLGEANEDVQQIVEI 460

Query: 479 LSEGK-KAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
              G  K  W+  ++ E             ++  E   S  +       ++HG M   ++
Sbjct: 461 FPAGPPKWQWLTRRLVEFTSVGSVLIFVTKKANSEELASNLKAQDFEAGLLHGDMDQSER 520

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             V+  FK  T  +++AT V   G+D+     ++  +         H++ GR GR     
Sbjct: 521 NKVISDFKKKTIPVMVATDVAARGLDIPSIKTVVNYDVARDIDTHTHRI-GRTGRAGNKV 579

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTE 615
           + I           +  +     T 
Sbjct: 580 TDISTLKANSDNPLFQLIEACDMTN 604


>gi|150025863|ref|YP_001296689.1| DEAD-box ATP dependent DNA helicase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772404|emb|CAL43884.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
           [Flavobacterium psychrophilum JIP02/86]
          Length = 644

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 77/363 (21%), Positives = 136/363 (37%), Gaps = 35/363 (9%)

Query: 268 NIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQ 323
           ++ F  PT+ QE AI  +L+       +  +     G+GKT      +   ++A     Q
Sbjct: 19  DLGFENPTEVQEKAIPMLLE-----KDIDLVALAQTGTGKTAAFGFPVIQKIDANNRNTQ 73

Query: 324 AVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           A+I++P   L  Q    +K Y++    I V  + G      + + ++R     A II+ T
Sbjct: 74  ALILSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQARDIKR----GAQIIVAT 129

Query: 383 HALFQDSIQYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP 432
               QD I             IL   DE    G  + +   L+      +  L +AT   
Sbjct: 130 PGRMQDMINRRLVDISQINYCILDEADEMLNMGFYEDIVNILSTTPDEKNTWLFSATMPA 189

Query: 433 RTLVLTSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
               +      D  +IT   K +G   +      +N  D   E LK +       + +  
Sbjct: 190 EVARIGKQFMTDPIEITVGAKNSGSATVSHEYYLVNARDR-YEALKRLADANPDIFSVV- 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     R        L E    S A +HG +S   ++ VM +F+    ++L+AT V
Sbjct: 248 -----FCRTKRDTQAVAEKLVEDGY-SAAALHGDLSQAQRDGVMKAFRGRQIQMLVATDV 301

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GIDV + + ++            H+  GR GR  ++ + I++      +   +   +
Sbjct: 302 AARGIDVDNVTHVVNYQLPDEIETYNHR-SGRTGRAGKLGTSIVIVTKSEIRKISSIERI 360

Query: 611 LKN 613
           +K 
Sbjct: 361 IKQ 363


>gi|119491286|ref|ZP_01623340.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106]
 gi|119453450|gb|EAW34612.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106]
          Length = 509

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 137/372 (36%), Gaps = 43/372 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L +I F  PT  Q  +I  IL           + Q   G+GKT    + +   ++     
Sbjct: 55  LESIGFTEPTPVQIQSIPQILSGRD------IVGQAQTGTGKTAAFSLPILEQIDHQAKD 108

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  + I+K +    + V  + G      + + LER      HI++G
Sbjct: 109 VQALILTPTRELAMQVKDAIRKMSNERSLYVLTVYGGQSIERQVQRLER----GVHIVVG 164

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D +   KL        +L   DE    G  Q ++   +A++            +
Sbjct: 165 TPGRVLDLLSRGKLKLHGIKWLVLDEADEMLSMGFIQDVEKILEASSKD---------RQ 215

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK-KAYWICPQI 492
           T   ++  +  I K+  K     P+   +       + I +    +  G  KA  + P +
Sbjct: 216 TAFFSATIEPSIWKLVRKFLN-SPVTVKVEQPKTTPKQISQEVYTVPRGWTKARALQPIL 274

Query: 493 EEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           E +           +       S  +    S+   HG ++   +E ++  F+    + ++
Sbjct: 275 ELEDPESAIVFVRTKQAAAELTSCLQGAGHSVDEYHGNLNQSQRERLLVRFRKRQVRWIV 334

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT +   G+DV   + +I  +      + +H++ GR GR       I L  P    +   
Sbjct: 335 ATDIAARGLDVDHLTHVINYDLPDNAESYVHRI-GRTGRAGREGKAITLLQP---MDRRK 390

Query: 607 RLSVLKNTEDGF 618
              + ++    F
Sbjct: 391 LRMIERHLRHNF 402


>gi|94263991|ref|ZP_01287792.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93455584|gb|EAT05769.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 509

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 79/410 (19%), Positives = 161/410 (39%), Gaps = 39/410 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +PT  Q +AI  +L           + Q   G+GKT    + + + ++      Q +++A
Sbjct: 29  TPTPIQAAAIGPLLAGRD------LLGQAQTGTGKTAAFALPLLSRLDTSRKYPQLLVLA 82

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+ Y+++     V  + G    A + +AL+R        ++GT    Q
Sbjct: 83  PTRELALQVADEIQAYSRHLPGFQVLPLYGGQNMAQQLRALQR----GVQAVVGTPGRIQ 138

Query: 388 DSIQYYKLILV--------IVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTL-- 435
           D ++   L L           DE  + G    +   L Q      V L +AT     +  
Sbjct: 139 DHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQRQVALFSATMTQEIMRI 198

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D +  ++  +    + I      +  + ++    +++ +E  +A  I  + +  
Sbjct: 199 ARRHLKDPEEIRLKTRTTTVETISQHYWLVQGLQKLDALTRILEAEAVEAMLIFVRTK-- 256

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                 + VE    L     +S A+ +G M+   +E  ++  K+GT  +++AT V   G+
Sbjct: 257 -----VATVELAEKLAARGFASAAL-NGDMTQGLREKTVEQLKDGTLDIVVATDVAARGL 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       I+   P   +  +      +   
Sbjct: 311 DVQRISHVVNYDIPYDTESYVHRI-GRTGRAGRQGQAIIFVAPREMRMLHAIEKATRQQI 369

Query: 616 DGFLI-AEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
               + +  ++ QR+   I   K+  +        E  + L+  A  +A+
Sbjct: 370 SRLQLPSRREVNQRR---IDQFKEKIIAASRQPGLEFFEELIAQATAEAE 416


>gi|117922031|ref|YP_871223.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117614363|gb|ABK49817.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 619

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 73/367 (19%), Positives = 136/367 (37%), Gaps = 38/367 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--G 322
           L  + +  PT  Q ++I  ++           + Q   G+GKT    + +   V +    
Sbjct: 21  LDELGYENPTPIQSASIDPLMAGKD------ILGQAQTGTGKTGAFALPLLNKVTSQAVP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E    Y +      V  I G      +  AL+R       +I+G
Sbjct: 75  QILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALKR----GPQVIVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLL--MTATPI 431
           T     D ++   L        +L   DE  + G    ++   + T     L   +AT  
Sbjct: 131 TPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQLALFSATMP 190

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            +   +    L D     I         I+   + +++ +++   ++V+  E  +   I 
Sbjct: 191 EQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGIIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +            VE    L     +S + +HG M+   +E  ++  K+G   +LIAT 
Sbjct: 251 VRTRNS-------CVELAEKLEARGYAS-SPLHGDMNQQARERAVEQLKSGKLDILIATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV     ++  +  +   A +H++ GR GR       IL      S+      +
Sbjct: 303 VAARGLDVERIGHVVNYDIPYDTEAYVHRI-GRTGRAGRTGMAILFVT---SREMRMLRT 358

Query: 610 VLKNTED 616
           + + T  
Sbjct: 359 IERATNS 365


>gi|168462889|ref|ZP_02696820.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195634348|gb|EDX52700.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 457

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 137/358 (38%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVTLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKETVSLDAL-HILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   ++PI+  I  ++ +   IE+     S  +K   +   + + +    
Sbjct: 187 WPEAIAAISGR-VQQQPIRIEIDTVDALP-AIEQQFFETSAHEKISLLQTLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNYELAWDPEVHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQ 361


>gi|114608129|ref|XP_518584.2| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Pan
           troglodytes]
          Length = 648

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 127/365 (34%), Gaps = 39/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---------EAGG 322
            PT  Q  A   +LQ +        I     G+GKTL  L+     +         +   
Sbjct: 264 KPTPIQSQAWPIVLQGID------LIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQKNRP 317

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++ P   LA Q      KY+    +    + G   +  + + L++       III T
Sbjct: 318 GMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIEELKK----GVDIIIAT 372

Query: 383 HALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      +    +  +++DE  +           K      +L+   P  +T++ 
Sbjct: 373 PGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMK------ILLDVRPDRQTVMT 426

Query: 438 TSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T+     + ++ +       I  V    ++ ++ + + I              ++     
Sbjct: 427 TATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQNMSS 486

Query: 494 EKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             K   F S     + L         S+  +HG     D+E  +++FK G  ++LIAT +
Sbjct: 487 TDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDL 546

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D + +   +        +H++ GR GR       I        + +   +++
Sbjct: 547 ASRGLDVHDVTHVYNFDFPRNIEEYVHRI-GRTGRAGRTGVSITTLTRNDWRVASELINI 605

Query: 611 LKNTE 615
           L+   
Sbjct: 606 LERAN 610


>gi|95930869|ref|ZP_01313600.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95133111|gb|EAT14779.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 463

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 84/420 (20%), Positives = 148/420 (35%), Gaps = 62/420 (14%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q  ++  IL           I QG  GSGKT    + +   +       QA+++ P 
Sbjct: 28  TPIQAQSLPHILAGRDV------IGQGKTGSGKTAAFGLGLLQKLNVKRFHVQALVLCPT 81

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + I+K  +    I V  + G MP   +  +LE      AHII+GT    ++ 
Sbjct: 82  RELADQVAKEIRKLARTIHNIKVLTLCGGMPFGPQLGSLEH----GAHIIVGTPGRIEEH 137

Query: 390 IQYYKLILVIV--------DEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++   L L  +        D     G Q+     + Q       LL +AT  PR +   +
Sbjct: 138 VRKGALKLDNLTLLVLDEADRMLEMGFQEALDAIIDQTPQTRQTLLFSAT-FPRQIESIA 196

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKK---AYWICPQIEE 494
              +    + +  A               D+  +R + +  L    +   A   C   ++
Sbjct: 197 GRVMKTPVMVQVEATHDSAVITQHFYEVADDTADRQQALRRLLRYYQPTSAVVFCNTKQD 256

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            +        +  + L EH  S++A+ HG +   +++  +  F NG+  +L+AT V   G
Sbjct: 257 TR--------DVADDLREHGFSALAL-HGDLEQRERDQSLVRFSNGSASILVATDVAARG 307

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+     +   +        +H++ GR GR         LY              L  +
Sbjct: 308 LDIEALDAVFNYHIARDTEVHVHRI-GRTGRAGSHGMACSLYSAKEHFKVERLAKFLDQS 366

Query: 615 EDG-------------FLIAEEDLKQ----R---KEGEILG--IKQSGMPKFLIAQPELH 652
             G                A   L+     R   + G+ILG      G+    + +  + 
Sbjct: 367 LTGEPLPEPSDETQPVMQPAMATLQIDSGKRQKIRPGDILGALTGGDGIRGDDVGKITVF 426


>gi|115910860|ref|XP_001177628.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68
           [Strongylocentrotus purpuratus]
 gi|115968720|ref|XP_001178951.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 1
           [Strongylocentrotus purpuratus]
          Length = 600

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 132/366 (36%), Gaps = 44/366 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---------AGGQ 323
           PT  Q       L           +     GSGKTL  L+     +           G  
Sbjct: 132 PTPIQAQGWPVALSGRD------LVGIAATGSGKTLSYLLPSIVHINHQPFLERGVDGPI 185

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +    + ++++I    + G  P+  + + LER       I I T 
Sbjct: 186 ALVLAPTRELAQQVQQVAFAFGRSSKIKSTCVYGGAPKGQQIRDLER----GVEICIATP 241

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               D ++  K        ++L   D     G   Q R  + Q      V + +AT    
Sbjct: 242 GRLIDFLENNKTNLRRCTYVVLDEADRMLDMGFEPQIRKIMEQIRPDRQVQMWSATWPKD 301

Query: 433 -RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
            R L    + D  +  I      A      I  V     +  ++I+ L+ ++ E      
Sbjct: 302 VRNLAEDFIRDYIMVNIGSLTLSANHNILQIIDVCEDSEKDKKLIQLLEEIMQEKDNKTL 361

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +  + +       R   +    +      +   +HG  S  +++ V+  F++G   +L+A
Sbjct: 362 VFCETK-------RRTDDLVRRMRRDGWPA-MCLHGDKSQPERDWVLSEFRDGRAPILVA 413

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D   +I  +  +     +H++ GR  R     +    +     K +   
Sbjct: 414 TDVASRGLDVTDIKFVINYDYPNSSEDYVHRI-GRTARSTRTGTAYTFFTRNNMKQAADL 472

Query: 608 LSVLKN 613
           ++VL+ 
Sbjct: 473 INVLQE 478


>gi|36787780|emb|CAE16895.1| inducible ATP-independent RNA helicase [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 644

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 137/366 (37%), Gaps = 36/366 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q+  I  +L           +     GSGKT    + +   + A    
Sbjct: 27  LEDLGYEKPSPIQQQCIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLHNINAELKA 80

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    ++++ + + V  + G      R     R       I++
Sbjct: 81  PQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGG----QRYDVQLRALRQGPQIVV 136

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   ++Q        L +AT 
Sbjct: 137 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATM 196

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + D    +I      R  I      +  + +    ++ + +E   A  I
Sbjct: 197 PEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAII 256

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +LIAT
Sbjct: 257 FVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDILIAT 308

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 309 DVAARGLDVERISLVVNYDIPMDAESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNVE 367

Query: 609 SVLKNT 614
             +K T
Sbjct: 368 RTMKLT 373


>gi|83746502|ref|ZP_00943553.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|83726833|gb|EAP73960.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
          Length = 566

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 130/361 (36%), Gaps = 34/361 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q +AI  ++           +     G+GKT    + +   +              
Sbjct: 109 PTPIQAAAIPVVVGGRDV------MGAAQTGTGKTAGFSLPIIQNLLPEANTSASPARHP 162

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q Y+ + KY + T +   ++ G +    + + L R       I++ 
Sbjct: 163 VRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRR----GVEILVA 218

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +Q   + L  V          R+           ++       +TL+ ++  
Sbjct: 219 TPGRLLDHVQQRSVNLSQV-RMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSATF 277

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--- 498
             +I K+        P    +   N   + + ++   + +G K   +   + ++ E    
Sbjct: 278 SPEIKKLAASYLRH-PQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQRAEQGLP 336

Query: 499 -------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N +    R     E    +   IHG  + I++   +++FK GT  +L+AT V 
Sbjct: 337 SQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGTVDVLVATDVA 396

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     +I  +        +H++ GR GR       + L+ P   +       ++
Sbjct: 397 ARGLDISQMPCVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLFAPGDERLLADIEKLI 455

Query: 612 K 612
           K
Sbjct: 456 K 456


>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
           biprosthecum C19]
 gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
           biprosthecum C19]
          Length = 606

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 70/342 (20%), Positives = 124/342 (36%), Gaps = 27/342 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q  AI  +L+     + +L I Q   G+GKT    + +   + +          +
Sbjct: 24  KPTPVQAQAIPYLLKG----HDLLGIAQ--TGTGKTAAFALPILQHLLSNRKMPSPKMVR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I++P   LA Q  E  K Y++   + +  I G +    + KAL     G   +++ T 
Sbjct: 78  ALILSPTRELASQIAESFKTYSKGMGLQIATIYGGVKYGPQYKALL----GGLDVLVCTP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D I+   + L  V+        Q L L        V   +  P  R  +  S    
Sbjct: 134 GRLIDHIEQKTVDLSQVECFVLDEADQMLDLGFVKPIRQV--ASRLPKKRQNLFFSATMP 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK------AYWICPQIEEKKE 497
               +        P +  I P     E + +  + +   +K       Y           
Sbjct: 192 KEIGVLASELLTDPKRVEITPEATTAERVSQQVLFIEAQRKRALLSEMYADAVLERTLVF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   +R  +  +      A IHG  +   +E  + +F+ G  + L+AT +   GIDV
Sbjct: 252 TRTKRSADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFRAGKVRALVATDIAARGIDV 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            + S +I     +   A +H++ GR  R  +    I L    
Sbjct: 312 DNVSHVINYELPNVAEAYVHRI-GRTARAGKSGVSITLCADD 352


>gi|322799058|gb|EFZ20513.1| hypothetical protein SINV_09810 [Solenopsis invicta]
          Length = 710

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 139/370 (37%), Gaps = 41/370 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q+ AI  I   MS ++ M        GSGKT   ++ +  ++    +        
Sbjct: 292 KPTPVQKYAIPII---MSGRDVM---ACAQTGSGKTAAFVLPILHSLLENQRDLVKTGSS 345

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               A+I++P   L  Q Y   KK++ N+ I VE+I G    +H+     ++ +G  H++
Sbjct: 346 CEPHAIIISPTRELTSQIYTQFKKFSLNSIIRVEVIYGGTSISHQTN---KVFNG-CHVL 401

Query: 380 IGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T     D I   K++L      ++DE  R      L   +K        M A    + 
Sbjct: 402 VATPGRLLDFIGRGKVVLSSLRFFVLDEADRMLDMGFLPDIEKILDHET--MVAAEERQM 459

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI ++  +         V I      +V +       +  K   +   IE+
Sbjct: 460 LMFSATFPNDIQELAGRFLRNYLFLAVGIVGGACADVEQIFYQASGQPDKRKLLKELIEK 519

Query: 495 KKE----------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           + +             +   +   +           IHG     ++E  +  FK G   +
Sbjct: 520 QNQLGSIEGTLVFVAQKRHTDFIAAFLSENNYPTTSIHGDRLQREREEALSDFKKGKMSI 579

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-PLSKN 603
           L+AT V   G+D+ + S +I  +        +H++ GR GR          + P   +  
Sbjct: 580 LVATAVAARGLDIKNVSHVINFDLPQTIDEYVHRI-GRTGRVGNRGKATSFFDPNSDTAL 638

Query: 604 SYTRLSVLKN 613
           +   + +LK 
Sbjct: 639 TGDLIKILKQ 648


>gi|316973226|gb|EFV56846.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
          Length = 496

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 69/399 (17%), Positives = 148/399 (37%), Gaps = 38/399 (9%)

Query: 214 KAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSP 273
              + +     ++ L++ EL   Q  L  +      +  +P+     + +   +     P
Sbjct: 31  SNSEDDDLKTEKQALSFQELCLLQCILFTILIACCTKGVVPV-----LCEACKQLNWTDP 85

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMAPI 330
           TK Q  AI   LQ          I   + GSGKT    + +  A+    Q   A+++ P 
Sbjct: 86  TKVQIEAIPLALQGRDV------IGLAETGSGKTAAFALPILQALLEHPQRLFALVLTPT 139

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E  +       I V +I G +    +   L +    + H+I+ T     D +
Sbjct: 140 RELAYQIAEQFEALGACIGIKVAVIVGGVDMVTQALCLAK----KPHVIVATPGRLVDHL 195

Query: 391 Q------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           +         L  +++DE        R+      +  + +L       +T + ++     
Sbjct: 196 ENTKGFSLRSLKYLVMDEAD------RILDMDFESEVNKILQVIPRERKTYLFSATMTKK 249

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---- 500
           ++K+ ++ + + P+K  +    +  + +++  + + +  K  ++   + E    +     
Sbjct: 250 VTKL-QRASLQDPVKVEVSSKYQTVDKLQQHYIFIPQKFKDCYLVYILNEMAGKSCIVFT 308

Query: 501 --RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
              +   R   L  +   +   +HG+MS   +   ++ FK     +LIAT V   G+D+ 
Sbjct: 309 STCANSLRTALLLRNLGFTAVPLHGQMSQAKRLGALNKFKAKDRSILIATDVASRGLDIP 368

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
              ++I  +        +H++ GR  R       I    
Sbjct: 369 HVDLVINFDIPTHSKDYIHRV-GRTARAGRAGISITFVT 406


>gi|301059813|ref|ZP_07200707.1| putative ATP-dependent RNA helicase RhlE [delta proteobacterium
           NaphS2]
 gi|300446139|gb|EFK10010.1| putative ATP-dependent RNA helicase RhlE [delta proteobacterium
           NaphS2]
          Length = 429

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 69/374 (18%), Positives = 146/374 (39%), Gaps = 33/374 (8%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N   ++A  ++      PT  Q  AI  +L +    + ++ + Q   G+GKT   ++ +
Sbjct: 6   FNFHPRVAAGVVAAGYVDPTPIQARAIPQVLDN----HDIMGVAQ--TGTGKTAAFVLPI 59

Query: 315 AAAVEA----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
              + A    G +A+IMAP   LA+Q ++ I+   + T +    + G +    + + L+ 
Sbjct: 60  LHRLMAKKSKGVRALIMAPTRELAEQIHQAIEVLGRETHVKSVTVYGGVGIHPQIENLK- 118

Query: 371 IAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
                AHI++       D      + + +L +++VDE  +      L           +L
Sbjct: 119 ----HAHIVVACPGRLLDHMNRKTVDFSRLEMLVVDEADQMFDMGFLPDI------RRIL 168

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV--IIPINRIDEVIERLKVVLSEGK 483
                  +TL+ ++    +I ++         +  +  + P   +   +  +   L    
Sbjct: 169 ARLPKKRQTLLFSATMPPEIRRLEGDILINPSMVQIGAVAPAETVRHALYPVPHHLKTAL 228

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
               +   + +      R+   R  SL +   S+    A + G +S   +++ ++ F++G
Sbjct: 229 LLKLLGDTVVKSVLVFTRTKY-RAKSLGKKLVSAGYPCASLQGNLSQGRRQAALEGFRDG 287

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
           T K+L+AT +   GID+   S +I  +      A +H++ GR GR               
Sbjct: 288 TYKILVATDIAARGIDITRVSHVINYDIPSTPEAYIHRI-GRTGRATRSGEAFTFMTGED 346

Query: 601 SKNSYTRLSVLKNT 614
                    +L  +
Sbjct: 347 KGMVRAINRILDAS 360


>gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 456

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 130/360 (36%), Gaps = 30/360 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
            PT  Q  AI  +L           +     G+GKT   ++ +   ++            
Sbjct: 23  EPTPIQAKAIPLVLSGRD------LLAAAQTGTGKTAAFMLPILERLKKFASTSASPAMH 76

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I++P   LA Q       YT+   +   ++ G M    + + L R       I+I
Sbjct: 77  PVRALILSPTRELADQIAVNAAAYTKYLPLRSTVVFGGMNMDPQTQELRR----GVEILI 132

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +    + L  VD        + L +        +L M      +TL+ ++ 
Sbjct: 133 ATPGRLLDHVGQKTVQLNKVDVLVLDEADRMLDMGFINDIRKILGML-PRTRQTLLFSAT 191

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
              +I ++ E+     P    +   N  +  +E+L   +   +K Y +   I E++    
Sbjct: 192 FAPEIKRLAEEFM-HDPQTVEVARQNSTNAQVEQLVFSVDSQRKRYLLSHLIRERQMGQV 250

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +   ++     +    +   IHG  +   +   + +FKNG  K+L+AT V   G
Sbjct: 251 IVFCKTKLSADQLARDLKRDGHAAEAIHGDKAQGARLETLTAFKNGEVKVLVATDVAARG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+ +   ++     +     +H++ GR GR       I L      K       + + T
Sbjct: 311 LDISELPYVVNFELPNAPEDYVHRI-GRTGRAGASGVAISLMGQDEGKQLEAIEKLTRQT 369


>gi|224009464|ref|XP_002293690.1| eukaryotic translation initiation factor 4A [Thalassiosira
           pseudonana CCMP1335]
 gi|220970362|gb|EED88699.1| eukaryotic translation initiation factor 4A [Thalassiosira
           pseudonana CCMP1335]
          Length = 369

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 128/344 (37%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ AIK  +           I Q   G+GKT    I   A ++      Q++I+A
Sbjct: 18  KPSAIQQRAIKPTMLGRD------LIAQAQSGTGKTATFAIGTLAKLDPKLRECQSLILA 71

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + +       ++ V    G        + L+    G  H+++GT     D
Sbjct: 72  PTRELAQQIQKVVIALGDYMELQVHACVGGTAVRDDIRTLQ----GGVHVVVGTPGRVYD 127

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
            I    L L  +        DE    G + ++         +  V L +AT     L +T
Sbjct: 128 MINRRALRLDSIRQFFLDEADEMLSRGFKDQIYDIFKFLPESVQVCLFSATMPLDVLEVT 187

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIE--RLKVVLSEGKKAYWICPQIEE 494
                D  +I  K      + IK   I + R +  ++            +A   C     
Sbjct: 188 QRFMRDPVRILVKKDELTLEGIKQFYIAVEREEWKLDTLCDLYETLTITQAIIYCNT--- 244

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R  V+      +    +++ +HG M   +++ +M  F++G+ ++LI T ++  G
Sbjct: 245 ------RRKVDWLQEQMQERDFTVSCMHGDMDQRERDIIMREFRSGSSRVLITTDLLARG 298

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           IDV   S++I  +        +H++ GR GR       I     
Sbjct: 299 IDVQQVSLVINFDLPTNRENYIHRI-GRSGRFGRKGVAINFLTE 341


>gi|91074155|gb|ABE09036.1| Cold-shock DEAD-box protein A [Escherichia coli UTI89]
          Length = 651

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 43  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 96

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 97  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 152

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 153 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 212

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 213 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 268

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 269 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 320

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 321 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 379

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 380 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 434

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 435 TAE---GEELDLETLAAALLKMA 454


>gi|124505577|ref|XP_001351530.1| eukaryotic initiation factor, putative [Plasmodium falciparum 3D7]
 gi|23498289|emb|CAD49261.1| eukaryotic initiation factor, putative [Plasmodium falciparum 3D7]
 gi|117956286|gb|ABK58711.1| eIF4A-like protein [Plasmodium falciparum]
          Length = 390

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 124/345 (35%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  IK IL           ILQ   G+GKT V  +     V       Q +I++
Sbjct: 39  KPSAIQQRGIKPILNGRDV------ILQSQSGTGKTCVFAVGALNCVNRNLNETQVIILS 92

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q  +          + +    G    +   KAL    +   H+I GT      
Sbjct: 93  PTRELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDIKAL----NNGVHVISGTPGRIYH 148

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLT 438
            +           +L++   DE    G ++++    +       ++L +AT     L +T
Sbjct: 149 MLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIILSSATLPQEVLEIT 208

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK--VVLSEGKKAYWICPQIEE 494
           +       KI  K      + IK   + I +     E L          +A   C     
Sbjct: 209 NKFMHKPVKILVKRDELTLEGIKQFFVSIEKEQWKYETLADLYESLTITQAVVFCNT--- 265

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+           ++  +H  MS  +++ +M  F+    ++LI+T +   G
Sbjct: 266 ------QMKVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLKFRQCKFRVLISTDIWGRG 319

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +DV + S+++  +  +   + +H++ GR GR       I      
Sbjct: 320 LDVQEVSLVVNYDLPNSRESYIHRI-GRSGRFGRKGVAINFVKND 363


>gi|56807749|ref|ZP_00365611.1| COG0513: Superfamily II DNA and RNA helicases [Streptococcus
           pyogenes M49 591]
          Length = 385

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 125/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +       QA+++AP 
Sbjct: 25  SPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ +   + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   LIL  V        DE    G        +++       LL +AT P P + + + 
Sbjct: 135 KRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  +I  K      +    + +   ++     +++     +   +  +       
Sbjct: 195 FMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D+ 
Sbjct: 249 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR  +    I    P 
Sbjct: 307 GVTHVYNYDITQDPESYVHRI-GRTGRAGKSGESITFVSPN 346


>gi|324993358|gb|EGC25278.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405]
 gi|327458716|gb|EGF05064.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057]
          Length = 523

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 73/362 (20%), Positives = 131/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          ++      QA+I+AP 
Sbjct: 25  SPIQEQTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLNQIETLILDEADEMLNMGFLEDIES-------IISRVPEERQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---SNFRS 502
            K       ++P    I       E++++  + + E +K   +   ++ ++      F  
Sbjct: 188 IKRIGVKFMKEPNHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGR 247

Query: 503 VVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
              R + L             IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKISGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|302327262|gb|ADL26463.1| ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 739

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 70/361 (19%), Positives = 144/361 (39%), Gaps = 35/361 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMA 328
           +P+  Q  AI  +LQ          +     G+GKT    + + + +   G+    +++ 
Sbjct: 83  TPSPIQAKAIPALLQG------ANLLGTAQTGTGKTAAFSLPLLSRINFNGRETSMLVLT 136

Query: 329 PIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I++Y  +   + V  + G    A + +AL+R    +A I++ T     
Sbjct: 137 PTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRALKR----KASIVVATPGRLI 192

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTL 435
           D I+           ++L   DE    G  + +   L +        L +AT     + +
Sbjct: 193 DHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQRALFSATMPDSVKKI 252

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           +   LG+ + ++I  K    + I    + +    ++    +V+  E      I  + +  
Sbjct: 253 IDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIEALARVLEGEEFDGVLIFVRTK-- 310

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E    L E    ++A ++G ++   +E  ++  K G   +++AT V   GI
Sbjct: 311 -----QNTTEVAEKL-ESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDVAARGI 364

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S+++  +  +   + +H++ GR GR     + IL   P   +   T     +   
Sbjct: 365 DVDRISLVVNYDIPYDTESYVHRI-GRTGRAGRSGNAILFITPREKRMLKTIEKATRQPI 423

Query: 616 D 616
           D
Sbjct: 424 D 424


>gi|297622829|ref|YP_003704263.1| DEAD/DEAH box helicase domain-containing protein [Truepera
           radiovictrix DSM 17093]
 gi|297164009|gb|ADI13720.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
           17093]
          Length = 442

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 129/374 (34%), Gaps = 36/374 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            ++  ++ Q +      +PT  Q +AI   L           +     G+GKT   ++ +
Sbjct: 11  FHLHPRLDQGLQAAGYTTPTPIQRAAIPAALAGRD------LLGLAQTGTGKTAAFVLPL 64

Query: 315 AAAVEAGGQ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
              +  G +    A+++AP   LA+Q +  I    + T +    + G +  A + +AL  
Sbjct: 65  LHRLMDGPRSCVRALVVAPTRELAEQIHGEIGVLGRATGLRSATVYGGVGMAPQARALR- 123

Query: 371 IAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATA 420
              G A II+       D ++           L+L   D     G     R  + +    
Sbjct: 124 ---GGAEIIVACPGRLLDHLERGTGTLAKLEVLVLDEADHMFDMGFLPAVRKLVGRVPEG 180

Query: 421 PHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
              LL +AT  P  R L    L      +I    A    +   + P+ R  +      ++
Sbjct: 181 AQRLLFSATMPPELRRLAEALLRAPVTLQIGRTEAAAT-VSHALYPVAREQKTALLKHLL 239

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
                ++  +  +         +   +R     E        + G +S   ++  +D+F+
Sbjct: 240 RHHDIRSALVFTRT--------KRGAKRLAESLERDNFFATSLQGNLSQTKRQKALDAFR 291

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +L+AT +   GIDV   S +   +      A  H++ GR GR            P
Sbjct: 292 AGEVHVLVATDIAARGIDVARVSHVFNYDVPTTAEAYTHRI-GRTGRAARTGEACTFVTP 350

Query: 599 PLSKNSYTRLSVLK 612
                       LK
Sbjct: 351 DDEGVVRQIERALK 364


>gi|294880401|ref|XP_002768997.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
 gi|239872070|gb|EER01715.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
          Length = 689

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 79/457 (17%), Positives = 157/457 (34%), Gaps = 63/457 (13%)

Query: 209 IHNPRKAKDFEWTSPARERLAYDELL--AGQIALLLMRKQFKKEIGIPINVEGKIAQKIL 266
              P    D  W      R AY++      Q   +     F +   IP+ V G  A +I 
Sbjct: 140 WSQPPPQGDGTWARRDGRRPAYEDERELFDQENTVHAGINFDQYDKIPVEVSGAGAAEIA 199

Query: 267 RNIPF-------------------SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
               F                    PT  Q+ +I  +        R   +     GSGKT
Sbjct: 200 PLEQFNDGEVDSHIVENINRCGFDRPTPVQKYSIPTLTA------RRDLMSCAQTGSGKT 253

Query: 308 LVALIAMAAAVEAGGQ-----------------AVIMAPIGILAQQHYEFIKKYTQNTQI 350
              LI     +   G                   +I++P   LA Q +E  +K+  NT I
Sbjct: 254 GAYLIPAIHNMLVDGPPNATSSGDYGRRKAYPVTLILSPTRELASQIHEEARKFCYNTGI 313

Query: 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHR 405
              ++ G      + + LER       I++ T     D ++ +++ L  +     DE  R
Sbjct: 314 RPVVVYGGADVRTQLRELER----GCDILVATPGRLSDLMERFRVSLCQIKMLIFDEADR 369

Query: 406 FGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
                      +       + ++    ++ + ++    +I ++           T +  +
Sbjct: 370 MLDMGFEPQI-RRIVEQEDMPSSRDGRQSAMFSATFPKEIQQLARDFLKEYIYLT-VGRV 427

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSI 518
                 I+++   + E  K   +   +EE+ E          +   +   ++        
Sbjct: 428 GSTHGSIKQIMRYVDENSKLRDLYRVLEEQTEEGLTLVFVETKRKADEIENMLRRDRYPA 487

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG  S  ++E  + +FK+G   +L+AT V   G+D+   +++I  +  +     +H+
Sbjct: 488 TSIHGDRSQWEREEALKAFKSGELPILVATDVAARGLDISHVNLVINYDLPNNIDDYVHR 547

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           + GR GR   + + I   +           ++L+  +
Sbjct: 548 I-GRTGRAGNLGTAIAFVNEGSKPILRDLWTLLEENK 583


>gi|261202786|ref|XP_002628607.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis
           SLH14081]
 gi|225556973|gb|EEH05260.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus G186AR]
 gi|239590704|gb|EEQ73285.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis
           SLH14081]
 gi|239612419|gb|EEQ89406.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis ER-3]
 gi|240277518|gb|EER41026.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H143]
 gi|325093598|gb|EGC46908.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H88]
 gi|327355221|gb|EGE84078.1| ATP-dependent RNA helicase FAL1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 399

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  I +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQICKGRDT------IAQAQSGTGKTATFSISILQVIDTVLRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        +      G        + L+       H++ GT     D
Sbjct: 101 PTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQ----HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 157 MIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  +T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 208 LPYDVLDMTTKFMT-DPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQ 266

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+ G  ++LI+T V   
Sbjct: 267 AVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWAR 326

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        +H++ GR GR       I      
Sbjct: 327 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVTSE 371


>gi|226330865|ref|ZP_03806383.1| hypothetical protein PROPEN_04786 [Proteus penneri ATCC 35198]
 gi|225201660|gb|EEG84014.1| hypothetical protein PROPEN_04786 [Proteus penneri ATCC 35198]
          Length = 475

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 127/345 (36%), Gaps = 38/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------GGQ-- 323
           +PT  Q+ AI+ IL           +     G+GKT    + +   +        G Q  
Sbjct: 24  TPTPIQQQAIEPILAGKDV------LASAQTGTGKTAAFTLPILEKLSQSATKTKGRQPV 77

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+ P   LA Q  E +K Y++   I   ++ G +    +   L     G   ++I T
Sbjct: 78  KALILTPTRELAAQIAENVKAYSRYIPIRSLVVFGGVSINPQMMKLR----GGVDVLIAT 133

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D     ++   ++ ++++DE  R      +           ++       + L+ 
Sbjct: 134 PGRLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDI------RRVINKLPKKRQNLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I+ +        P+   + P N   E +++   ++ + +K   +   I  +  
Sbjct: 188 SATFSKEITGLANSLLN-NPVSISVAPKNSAAESVDQYVHLVDKKRKTELLSHLIGLENW 246

Query: 498 SN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F       N L EH  +     A IHG  S   +   +  FK+G  K L+AT + 
Sbjct: 247 PQVLIFTRTKHGANKLAEHLNADGIKSAAIHGNKSQGARTRALADFKDGKLKALVATDIA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             G+D+     ++           +H++ GR GR       I L 
Sbjct: 307 ARGLDIDQLPYVVNFELPQVAEDYVHRI-GRTGRAAATGKAISLV 350


>gi|120610479|ref|YP_970157.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588943|gb|ABM32383.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 599

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 132/362 (36%), Gaps = 39/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L           +     G+GKT    + M   +  GG        +
Sbjct: 23  TPTPIQAQAIPAVLAGHD------LLAGAQTGTGKTAAFTLPMLHRLTQGGTARPAGGIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA Q  E ++ Y ++  +   +I G +    +   ++R       I++ T 
Sbjct: 77  ALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDRIKR----GVDILVATP 132

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PI 431
               D      +   ++ ++++DE  R      +   +K           LL +AT    
Sbjct: 133 GRLLDLQQQGFLDLSRVEILVLDEADRMLDMGFIHDVKKVLALVPRDKQSLLFSATFSDE 192

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R L  T L +    ++T +    + I  VI P+ R  +     +V+L   ++  W    
Sbjct: 193 IRELAGTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKK----QVLLHIIQQHNWSQVL 248

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +  + +    +V E           +   +HG  S   +   +  FK+G  + L+AT + 
Sbjct: 249 VFTRTKFGANNVAEFLTK----NGVTAMALHGNKSQSARTQALAGFKSGDIRALVATDIA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ +   ++     +     +H++ GR GR       + L                
Sbjct: 305 ARGIDIDELPHVVNYEIPNVPEDYVHRI-GRTGRAGASGEAVSLVCMDEEGFMMEIERFT 363

Query: 612 KN 613
           K 
Sbjct: 364 KQ 365


>gi|312376439|gb|EFR23520.1| hypothetical protein AND_12717 [Anopheles darlingi]
          Length = 696

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 140/374 (37%), Gaps = 46/374 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           LR   F+ PT  Q       L        M+ I     GSGKTL  LI     ++     
Sbjct: 111 LRYAGFTAPTPIQAQGWPIAL----SGRDMVGI--AKTGSGKTLSYLIPALIHIDQQPRL 164

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G  A+I++P   LAQQ  +    + +  +     + G   +  +++ LE       
Sbjct: 165 RRGDGPIALILSPTRELAQQIKQVADDFGRALKYKNTCLFGGGKKRKQQEDLEY----GV 220

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            I+I T     D +   +        L+L   D     G + ++           ++   
Sbjct: 221 EIVIATPGRLIDFLSMNQTNLRRCSYLVLDEADRMLDMGFEPQI---------RTIIEQI 271

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKK 484
            P  +TL+ ++     ++++ +          V    +   + I ++I+  +    E K 
Sbjct: 272 RPDRQTLMWSATWPDVVARLVKDYLKDYVQINVGSLKLAANHNILQIIDVCQESEKESKL 331

Query: 485 AYWICPQIEEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
           +  +   + EK+         +  V+      +        IHG  S  +++S + SF++
Sbjct: 332 SILLREIMAEKECKTIIFIETKKRVDDITRKVKRDGWPARCIHGDKSQNERDSTLKSFRS 391

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +LIAT V   G+DV D   +I  +        +H++ GR GR +   +    + P 
Sbjct: 392 GRTPILIATDVAARGLDVDDVKFVINFDFPTTSEDYIHRI-GRTGRCDNTGTAYTFFTPN 450

Query: 600 LSKNSYTRLSVLKN 613
            +  +   + VLK 
Sbjct: 451 NAAKARDLIDVLKE 464


>gi|225444867|ref|XP_002281219.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297738640|emb|CBI27885.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 68/341 (19%), Positives = 127/341 (37%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----SSGVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L +T
Sbjct: 172 MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ +  +E L          Y      +   
Sbjct: 232 RKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   S++I  +        LH++ GR GR       I    
Sbjct: 345 VQQVSLVINFDLPTQPENYLHRI-GRSGRFGRKGVAINFVT 384


>gi|270296763|ref|ZP_06202962.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272750|gb|EFA18613.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 429

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 125/359 (34%), Gaps = 34/359 (9%)

Query: 271 FSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------Q 323
           F   T  QE +I  IL+          I     G+GKT   L+ +   +  GG       
Sbjct: 21  FEECTPIQEKSIPVILEGRD------LIAVAQTGTGKTAAYLLPILNKLSEGGHPADAIN 74

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            ++MAP   LAQQ  + ++ ++    +    + G        +    +  G A ++I T 
Sbjct: 75  CIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKRGLTLG-ADVVIATP 133

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
                      +   ++   I+DE  R      L +        ++        +T++ +
Sbjct: 134 GRLIAHLSLGYVDLSRVSYFILDEADRM-----LDMGFYDDIMQIVKFL-PKERQTIMFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I ++            V + +++  E I +   V  E +K   I     E+   
Sbjct: 188 ATMPAKIQQLAGNILNNPAE--VKLAVSKPAEKIVQAAYVCYENQKLGIIRSLFAEETPE 245

Query: 499 NF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  V+      +    ++  +H  +    +E VM  FK G   +L+AT ++ 
Sbjct: 246 RVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            GID+ D  ++I  +  H     +H++ GR  R       I         +       L
Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDYVHRI-GRTARANNDGVAITFVSEKEQGSFKNIEKFL 363


>gi|207856830|ref|YP_002243481.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206708633|emb|CAR32955.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 457

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 137/358 (38%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVTLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKETVSLDAL-HILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   ++PI+  I  ++ +   IE+     S  +K   +   + + +    
Sbjct: 187 WPEAIAAISGR-VQQQPIRIEIDTVDALP-AIEQQFFETSAHEKISLLQTLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNYELAWDPEVHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQ 361


>gi|145219726|ref|YP_001130435.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205890|gb|ABP36933.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeovibrioides
           DSM 265]
          Length = 412

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 132/361 (36%), Gaps = 37/361 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QA 324
           PT  Q  AI  +L+          +     G+GKT    I +   +            ++
Sbjct: 24  PTPIQAEAIPVVLKG------GDILGCAQTGTGKTAAFAIPILQRLGESRVQGRIKKIRS 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E    Y ++T +   +I G + Q  +   L         I++ T  
Sbjct: 78  LIVTPTRELAIQIGESFSAYGRHTPLTNTVIFGGVNQNPQISRL----KNGVDILVATPG 133

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I  + + ++++DE  R      +   +K      +L       ++L  ++
Sbjct: 134 RLLDLMNQGFINLHDVEILVLDEADRMLDMGFIHDIRK------VLAALPKEKQSLFFSA 187

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
               DI +++       P K  + P +   E+I +    + +G K+  +   ++      
Sbjct: 188 TMPPDIVRLSST-ILHNPAKISVTPPSSTVEIINQQIYFVDKGNKSPLLVHLLKNPDITT 246

Query: 497 ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F       + + +H   +      IHG  +   ++  + +FK+   ++L+AT +   
Sbjct: 247 ALVFTRTKHGADKVVKHLLKNGITAEAIHGNKAQNARQRALSNFKSQKTRVLVATDIAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GIDV +   +I  +  +     +H++ GR GR     + I                ++  
Sbjct: 307 GIDVDELQHVINYDTSNIPETYVHRI-GRTGRAGASGTAISFCDAEEKAYLKDIEKLIAK 365

Query: 614 T 614
           +
Sbjct: 366 S 366


>gi|309972622|gb|ADO95823.1| ATP-dependent RNA helicase DeaD [Haemophilus influenzae R2846]
          Length = 613

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 86/437 (19%), Positives = 161/437 (36%), Gaps = 49/437 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+S I  +L           +     GSGKT    + + A +   E   
Sbjct: 21  SDLGFETPSPIQQSCIPHLLNG------NDVLGMAQTGSGKTAAFALPLLAQIDPSEKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  +++ +      +  + G      R     R     A +I+G
Sbjct: 75  QMLVMAPTRELAIQVADACEQFVKYAQGTRIVTLYGG----QRYDIQLRALKQGAQVIVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 131 TPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMP 190

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I+     ++ + +    L+ +  E   A  I 
Sbjct: 191 EPIRRITKRFMNDPQEVKIKVNNENAPDIEQSCWYVHGVRKNEALLRFLEVEDFDAAIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +NG+  +++AT 
Sbjct: 251 ARTKTGTLD--------ITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S+++  +      + +H++ GR GR       +L   P   +       
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEH 361

Query: 610 VLKNTEDGFLIAEEDL--KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           ++K   +   +    +  + R++  +  I +         Q E HD  LE  R   + + 
Sbjct: 362 LMKKGINEVELPNHLVLQECRRKKFVAKITK---------QLEHHD--LEQYRSLLEDLF 410

Query: 668 TQDPDLTSVRGQSIRIL 684
           T D D  ++    + +L
Sbjct: 411 TADQDQENIAAAMLMLL 427


>gi|323964518|gb|EGB59993.1| DEAD/DEAH box helicase [Escherichia coli M863]
          Length = 398

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQKIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAITAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|183598226|ref|ZP_02959719.1| hypothetical protein PROSTU_01610 [Providencia stuartii ATCC 25827]
 gi|188020395|gb|EDU58435.1| hypothetical protein PROSTU_01610 [Providencia stuartii ATCC 25827]
          Length = 445

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 133/352 (37%), Gaps = 39/352 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           +  + +  PT  Q+ AI  +L           +     G+GKT    + +   + +  + 
Sbjct: 17  INELGYEAPTPIQQQAIPAVLDGHD------LLASAQTGTGKTAGFTLPILQKLISTPRI 70

Query: 324 --------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                   A+I+ P   LA Q  E +K+Y+++ +I   ++ G +    +   L     G 
Sbjct: 71  GKDRKPIRALILTPTRELAAQVAENVKEYSRHLRIRSFVVFGGVSINPQMMKLR----GG 126

Query: 376 AHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
             I+I T     D     ++   ++ ++++DE  R      +           ++     
Sbjct: 127 VDILIATPGRLLDLEHQNAVNLSQVEILVLDEADRMLDMGFIHDI------RRVISKLPK 180

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + L+ ++    +I ++  K     P+   + P N   E + +    + + +KA  +  
Sbjct: 181 KRQNLLFSATFSNEIKQLANKLLD-NPVTIEVAPRNSASEQVTQFVHHVDKKRKAELLSY 239

Query: 491 QIEEKKESN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            I  +       F       N L EH        A IHG  S   +   +  FK+G  ++
Sbjct: 240 MIGRENWQQVLVFTRTKHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDVRV 299

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           L+AT +   G+D+     ++     +     +H++ GR GR +     + L 
Sbjct: 300 LVATDIAARGLDIEQLPYVVNFELPNVAEDYVHRI-GRTGRADTTGMAVSLV 350


>gi|149203654|ref|ZP_01880623.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. TM1035]
 gi|149142771|gb|EDM30813.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. TM1035]
          Length = 759

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 139/387 (35%), Gaps = 45/387 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
           + T  QE+     L           ++    GSGKT+   +A+A  +  G          
Sbjct: 17  TLTPVQEAVTDPALSG------SDLLVSAQTGSGKTVGFGLAIAPTLLGGEDRLPPAAAP 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+AP   LA Q    +          +    G M     R+ALER     AHI++GT
Sbjct: 71  LALIVAPTRELALQVMRELSWLYAEAGARLVTCVGGMDARDERRALER----GAHIVVGT 126

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I    L        +L   DE    G ++ L+           L  A    RT
Sbjct: 127 PGRLCDHINRGALDMTSLRAIVLDEADEMLDLGFREDLEFM---------LAAAPEDRRT 177

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I+K+ EK        T +    +  + I    + +S       +   +  
Sbjct: 178 LMFSATVPPMIAKLAEKFQRDAQRVTTLTGAKQHAD-IAYQALTVSPQDAEGAVINLLRY 236

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
               N       R++V R  +   +   ++  + G +S  ++   + + ++G  ++ +AT
Sbjct: 237 HDAQNAIVFANTRAMVARLTARLSNRGFAVVSLSGELSQSERTHALQAMRDGRARVCVAT 296

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+ +  +++           LH+  GR GR        L+     +  +   L
Sbjct: 297 DVAARGIDLPNLDLVVHAELPTNSEGLLHR-SGRTGRAGRKGISALIVPLKSANKAERLL 355

Query: 609 SVLKNTEDGFLIA-EEDLKQRKEGEIL 634
              K T +       ED++ +    +L
Sbjct: 356 KFAKITAEWTTPPTPEDIEAKDRERLL 382


>gi|241204745|ref|YP_002975841.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858635|gb|ACS56302.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 651

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 130/350 (37%), Gaps = 46/350 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
             T  Q++ +   L           ++    GSGKT+   +A+A  +  G +        
Sbjct: 22  ELTPVQKAMLDPALA------ASDALVSAQTGSGKTVAFGLALAPTLLEGRERFGNAAAP 75

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    ++   + T  ++    G M     R++LER     AHI++GT
Sbjct: 76  LALVIAPTRELALQVKRELEWLFEMTGAVIVSCVGGMDIRSERRSLER----GAHIVVGT 131

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP 432
                D I+   L        +L   DE    G ++ L+            L+ +AT   
Sbjct: 132 PGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDAAPDERRTLMFSATVPA 191

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTV-----IIPINRIDEVIERLKVVLSEGKKAYW 487
               L      D  +I+     ++ I        + P +R + +I  L+    E   A  
Sbjct: 192 AIAKLAKSYQRDAVRISTAAEEKQHIDIEYRALMVAPSDRENAIINVLRY--YEATNAIV 249

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C           R+ V    +   +   ++  + G ++  ++   + + ++G  ++ IA
Sbjct: 250 FCST---------RAAVNHLTARFNNRNFAVVALSGELTQNERTHALQAMRDGRARVCIA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           T V   GID+    ++I  +        LH+  GR GR        ++  
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGISAMIVP 349


>gi|329962827|ref|ZP_08300712.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
 gi|328529384|gb|EGF56297.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
          Length = 428

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 125/358 (34%), Gaps = 33/358 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE +I  IL+          I     G+GKT   L+ +   +  G         +IM
Sbjct: 25  TPIQEKSIPVILEGRD------LIAVAQTGTGKTAAYLLPVLDKLSEGRHPEDSINCIIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LAQQ  + ++ ++    +    + G        +  + +  G A ++I T     
Sbjct: 79  APTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLTLG-ADVVIATPGRLI 137

Query: 388 DS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                  +   ++   I+DE  R                  ++       +T++ ++   
Sbjct: 138 AHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIM------QIVKHLPKERQTIMFSATMP 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
             I ++            V + +++  + I +   V  E +K   I     E+       
Sbjct: 192 AKIQQLANNILNNPAE--VKLAVSKPADKIVQAAYVCYENQKLGIIRSLFAEQTPERVII 249

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +    ++  +H  +    +E VM  FK G   +L+AT ++  GID
Sbjct: 250 FASSKIKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGID 309

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           + D  ++I  +  H     +H++ GR  R       +         N     + L+ T
Sbjct: 310 IDDIRLVINYDVPHDSEDYVHRI-GRTARANNDGVALTFISEKEQSNFKNIENFLEKT 366


>gi|325694070|gb|EGD35988.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150]
          Length = 523

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 131/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          ++      QA+I+AP 
Sbjct: 25  SPIQEQTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLNQIETLILDEADEMLNMGFLEDIES-------IISRVPEERQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            K       ++P    I       E++++  + + E +K   +   ++ ++         
Sbjct: 188 IKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGR 247

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|323453004|gb|EGB08876.1| Apo-Eif4aiii [Aureococcus anophagefferens]
          Length = 395

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/371 (18%), Positives = 134/371 (36%), Gaps = 39/371 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+ AI  I+           I Q   G+GKT V  IAM   +E      Q + ++P
Sbjct: 45  PSAIQQRAITPIVAGRDV------IAQSQSGTGKTAVFCIAMLQVLESATNETQMLTISP 98

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  +          +      G        + L+        I+ GT     D 
Sbjct: 99  TRELAEQTQKVCLALGDYMNVQCHACIGGKSIGEDIRRLDY----GVQIVSGTPGRVFDM 154

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           I+   L        ++   DE    G ++++    +            P  + +++++  
Sbjct: 155 IKRRNLRTRNLKMLVIDEADEMLNRGFKEQIYDIYRYLP---------PSTQVVLISATM 205

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKK---- 496
             ++  +T K    +P++ ++       E I++  V +     K   +C   +       
Sbjct: 206 PQEVLDMTRKFMN-EPVRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA 264

Query: 497 --ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +  V+   +       +++ +HG M   +++++M  F+ G  ++LIAT +   G
Sbjct: 265 VIFCNTKRKVDWLANKMREANFTVSAMHGDMPQRERDAIMAEFRGGASRVLIATDIWGRG 324

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S++I  +  +     +H++ GR GR       I        +            
Sbjct: 325 LDVQQVSLVICYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKNDDVRILRDIEQYYSTQ 383

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 384 IDEMPMNVADL 394


>gi|237745550|ref|ZP_04576030.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
 gi|229376901|gb|EEO26992.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
          Length = 470

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 82/389 (21%), Positives = 142/389 (36%), Gaps = 45/389 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ +S PT  Q  AI  IL+          +     G+GKT    + +  ++      
Sbjct: 30  LDDLGYSSPTPIQSQAIPVILEGKDV------MGAAQTGTGKTAGYSLPVLQSLLYYANA 83

Query: 323 ---------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                    +A+I+ P   LA Q YE ++KY + T +   ++ G +  + +   L     
Sbjct: 84  SMSPARHPVRALILVPTRELADQVYEDVRKYAKYTSLRTAVVFGGVDMSGQTGILRA--- 140

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQK-----ATAPHV 423
             A I+I T     D IQ   + L       +DE  R      L   Q+           
Sbjct: 141 -GAEILIATPGRLLDHIQQKNVNLGQTGILVLDEADRMLDMGFLPDLQRIVNLLPKKRQN 199

Query: 424 LLMTATP--IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           LL +AT     R L  + L      ++  + A    +   +  I+  D+      ++   
Sbjct: 200 LLFSATFSSEIRKLANSFLDRPVSVEVARQNATADNVTQTVYRIDEADKNDAVEYLLRLH 259

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            ++   I         SN ++   R     E      A IHG  +  ++ + +D+FK G 
Sbjct: 260 KREQVLIF--------SNTKAGASRLARQLEKKGLKAAAIHGDKTQAERMAALDAFKEGN 311

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   G+ + +   +I  +        +H++ GR GR       I L      
Sbjct: 312 ITVLVATDVAARGLHIEELPCVINFDLPFVAEDYVHRI-GRTGRAGASGEAISLCSAKDE 370

Query: 602 KNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           K       ++K       I   D + RKE
Sbjct: 371 KLLNEIEKLIKRKLPVHSIP--DPEIRKE 397


>gi|162138368|ref|YP_542567.2| ATP-dependent RNA helicase DeaD [Escherichia coli UTI89]
          Length = 629

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 TAE---GEELDLETLAAALLKMA 432


>gi|153212167|ref|ZP_01947962.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae 1587]
 gi|124116719|gb|EAY35539.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae 1587]
          Length = 406

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 66/337 (19%), Positives = 132/337 (39%), Gaps = 30/337 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 22  QPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 75

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +    + G + +A ++ AL        +I++ T     D 
Sbjct: 76  TRELAMQVSDVLTHVGTPLGLNTLCLCGGVDKAEQQNALAE----NPNILVATTGRLFDL 131

Query: 390 IQ----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            Q      ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 132 TQSGLSLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTASVRQTVMCSATFSDD 184

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 185 LKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 244

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S  ++E+ +  FKNG+ ++LIAT ++  GI +  
Sbjct: 245 AKENADSLTKKLKKAGVVATALHGDKSQSEREAALAEFKNGSTQVLIATDLLARGIHIEQ 304

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             ++I           +H++ GR  R  +    + L 
Sbjct: 305 LPVVINFELPMHAETYVHRV-GRTARAGQQGIAVSLV 340


>gi|313238875|emb|CBY13871.1| unnamed protein product [Oikopleura dioica]
          Length = 1036

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 144/375 (38%), Gaps = 42/375 (11%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---- 319
           +++ + F  PT  Q   +  I+           I     GSGKTL  ++ M   +E    
Sbjct: 386 LIKRMKFEKPTPIQAQCLPAIMSGRDV------IGIAKTGSGKTLGFVLPMLRHMEHQRE 439

Query: 320 ----AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  AVIM P   LA Q  +  +K+  + +     + G    + +   L+R     
Sbjct: 440 VEKGEGPIAVIMTPTRELAIQITKDTRKFANHMRWRTVCVYGGTGISEQISELKR----G 495

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A III T     D +           +    ++DE  R                  +L +
Sbjct: 496 AEIIICTPGRMIDMLAANNGRVTNLRRCTYCVLDEADRMFDMGFEPQVMH------ILNS 549

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  + ++ ++     +  +  +    KP++  +   + + + +++  VVL++  K   
Sbjct: 550 VRPDRQLVLFSATFPRSMEALARR-ILTKPLEITVGGKSVVCDDVQQNVVVLNDEDKFLK 608

Query: 488 ICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           +   +   +E      F    E  ++L +    +      +HG M   D++SV++ FK G
Sbjct: 609 LLELLGRFQESGSVIVFTHKHEVADALLKEVLKAGYPAQALHGGMDQYDRDSVINDFKKG 668

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              LLIAT+V   G+DV +  +++  +  +     +H+  GR GR     +         
Sbjct: 669 VSNLLIATSVAARGLDVKNLILVVNFDCPNHYEDYVHR-CGRTGRAGNKGTAYTFLTEEE 727

Query: 601 SKNSYTRLSVLKNTE 615
            K +   +  L+ ++
Sbjct: 728 GKYAGDIIKALEMSK 742


>gi|304311852|ref|YP_003811450.1| Superfamily II DNA and RNA helicases [gamma proteobacterium HdN1]
 gi|301797585|emb|CBL45806.1| Superfamily II DNA and RNA helicases [gamma proteobacterium HdN1]
          Length = 458

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 86/467 (18%), Positives = 174/467 (37%), Gaps = 75/467 (16%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           LR + +S  T  Q  A+  IL           I Q   GSGKT    I +  ++     G
Sbjct: 19  LRGLGYSQMTPIQAQALPPILDG------ADVIAQSKTGSGKTAAFGIGVLTSLNPRFFG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  ++ Q I +  + G      +  +LE      AHII+
Sbjct: 73  TQALVLCPTRELADQVAKELRRLARSLQNIKILTLCGGTAIGPQFASLEH----GAHIIV 128

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT       +            L+L   D     G   ++    +               
Sbjct: 129 GTPGRVTKHLDKGSLDLQGLKTLVLDEADRMLDMGFYDQIAEIARFIPKR---------R 179

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I +++ +     P++  +  ++   E IE+    +   ++   +   +
Sbjct: 180 QTLLFSATYTPAIRELS-RNFQSNPVEITVESVHADSE-IEQYFYEVDHKQRRRALSALL 237

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +  K        N + + +               +HG M   D++ V+  F N +C  L+
Sbjct: 238 KNFKPESAVLFCNTKQLCDEVADALNAQGFYAQTLHGDMEQRDRDLVLLKFSNRSCPYLV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ D + ++  +        +H++ GR GR  +    + L  P   + +  
Sbjct: 298 ATDVAARGLDIKDLAAVVNVDVAFDPDVHIHRI-GRTGRAGQKGLALSLCSPAEVQRANA 356

Query: 607 RLSVLKNTEDGFLIAEEDL------------------------KQRKEGEILG--IKQSG 640
             ++L     G  +   DL                         + + G+ILG     +G
Sbjct: 357 IETLL-----GRPLHWRDLPPSNDNETPEPPRMVTLNIGGGKRDKLRPGDILGALTGDAG 411

Query: 641 MPKFLIAQPELHDS--LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +P   I + ++ D    + + R  A+  + +      ++G+S R+ +
Sbjct: 412 LPGASIGKIDIGDQQTYVAVERAIAQKAVKRL-QSGKIKGRSYRVRI 457


>gi|163751207|ref|ZP_02158436.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
 gi|161329036|gb|EDQ00109.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
          Length = 611

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 137/365 (37%), Gaps = 36/365 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  PT  Q ++I  ++           + Q   G+GKT    + + + ++     
Sbjct: 21  LDELGYEKPTPIQAASIIPLMAGKD------ILGQAQTGTGKTGAFALPLLSNIDPAINA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    Y +    + V  I G      +  AL R       +I+
Sbjct: 75  PQILVLAPTRELAVQVAEAFATYAKFVKGLHVLPIYGGQSMHQQLNALRR----GPQVIV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLL--MTATP 430
           GT     D ++   L        +L   DE  + G    ++   + T     L   +AT 
Sbjct: 131 GTPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLALFSATM 190

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
             +   +    L D    KI    A  +  +   + +++ +++   ++V+  E  +   I
Sbjct: 191 PEQIKRVANKYLTDPIHVKIAATTATVETTEQRFVQVSQHNKLEALVRVLEVEKTEGIII 250

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +            VE    L     +S + +HG M+   +E  ++  K G+  +LIAT
Sbjct: 251 FVRTRNS-------CVELAEKLEARGYAS-SPLHGDMNQQARERAVEQLKRGSLDILIAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV     +I  +  +   A +H++ GR GR       IL       +   T  
Sbjct: 303 DVAARGLDVERIRHVINYDIPYDTEAYIHRI-GRTGRAGRTGMAILFVTHREMRMLRTIE 361

Query: 609 SVLKN 613
              K+
Sbjct: 362 RATKS 366


>gi|227524|prf||1705300A ATP dependent RNA helicase
          Length = 604

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 129/373 (34%), Gaps = 43/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------------- 316
            PT  Q+ ++  +      K           GSGKT   L  + +               
Sbjct: 164 KPTPVQKYSVPIVANGRDLK------ACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQG 217

Query: 317 ---AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                +A   AVIMAP   LA Q ++  KK+T  + +   ++ G  P  ++ + +ER   
Sbjct: 218 SFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIER--- 274

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  K+ L  V     DE  R          Q         MT 
Sbjct: 275 -GCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEP--QIRHIVEDCDMTP 331

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++    DI  +  +      I   +  +    E I +  + +    K   +
Sbjct: 332 VGERQTLMFSATFPADIQHLA-RDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSAL 390

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +    +         + + ++              IHG  +  ++E  + +F++G  
Sbjct: 391 LDLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAA 450

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+AT V   G+D+ + + +I  +        +H++ GR GR          ++   S 
Sbjct: 451 TLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRI-GRTGRAGNTGLATAFFNSENSN 509

Query: 603 NSYTRLSVLKNTE 615
                  +L    
Sbjct: 510 IVKGLHEILTEAN 522


>gi|139473559|ref|YP_001128275.1| DEAD box helicase family protein [Streptococcus pyogenes str.
           Manfredo]
 gi|134271806|emb|CAM30039.1| DEAD box helicase family protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 539

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 66/341 (19%), Positives = 125/341 (36%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +       QA+++AP 
Sbjct: 25  SPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ +   + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   +IL  V        DE    G        +++       LL +AT P P + + + 
Sbjct: 135 KRKAVILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  +I  K      +    + +   ++     +++     +   +  +       
Sbjct: 195 FMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D+ 
Sbjct: 249 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR  +    I    P 
Sbjct: 307 GVTHVYNYDITQDPESYVHRI-GRTGRAGKSGESITFVSPN 346


>gi|37676599|ref|NP_936995.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201142|dbj|BAC96965.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 445

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 66/390 (16%), Positives = 143/390 (36%), Gaps = 31/390 (7%)

Query: 238 IALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRI 297
           I  L  R       G       ++ + +        T  Q+ AI    +           
Sbjct: 11  IVCLRKRSMSFASQGFA----PEVVKALEECGYEKLTPIQQKAIPVARRGHD------IF 60

Query: 298 LQGDVGSGKTLVALIA-MAAAVEAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQ 349
                G+GKT    +  +   +E+G        +A+I AP   LA+Q  + IK YT+ T 
Sbjct: 61  ATAQTGTGKTAAFSLPLIQQLLESGKSASRKTARALIFAPTRELAEQIADNIKAYTKYTN 120

Query: 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQ 409
           + V  I G    + + + LE        I++ T    ++ I+   + +  + E   F   
Sbjct: 121 LSVAAIFGGRKMSSQERMLEN----GVDILVATPGRLEEHIESGNVSVANI-EFLVFDEA 175

Query: 410 QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
            R+       A   +++     P+ ++ ++     +++++ K   RKP +  +   N   
Sbjct: 176 DRILDMGFINAVRKIMLDVETNPQIMMFSATTSSQLNELS-KDILRKPKRIAVERENTTA 234

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFT---SSIAIIHG 523
             +  +   + + +K   +   I  K       F +  E  N + +          + HG
Sbjct: 235 HTVAHVLYPVDQERKTELLSELIGRKNWQQVLVFVNYKETANDIVKELKLDGIKANVCHG 294

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
             +   +   ++ FK G  ++++AT V   G+D+ D   ++  +        +H++ GR 
Sbjct: 295 DKAQSARRRALEEFKEGKVRVMVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRI-GRT 353

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GR  +    +   +           ++++ 
Sbjct: 354 GRAGKQGHAVSFVNREEELTVVQVENLIQQ 383


>gi|71659539|ref|XP_821491.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70886872|gb|EAN99640.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 595

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/348 (19%), Positives = 119/348 (34%), Gaps = 41/348 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
           SPT  Q  A   +L    +   M+ +     GSGKTL  ++   A +          G  
Sbjct: 134 SPTAVQAQAWPILL----RGRDMVGV--AKTGSGKTLAFMVPALAHIAMQEPLRTGDGPM 187

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            V++AP   LAQQ  +  KK   +  +    + G  P+  +   L        HI++ T 
Sbjct: 188 VVVLAPTRELAQQIEQETKKVLPH-DLRCGCVYGGAPKGPQLGILRN----GVHILVATP 242

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D ++  +        L+L   D     G   Q R    Q       L+ +AT    
Sbjct: 243 GRLIDFLEIKRVNFFRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDRQTLMFSATWPKE 302

Query: 434 TLVLTSLGDIDISKI---TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
              L +    D  +I   + +    K +    I      ++ E  K++ +   +   I  
Sbjct: 303 IQRLAAEFQKDWIRINVGSTELLANKDVTQHFILTQEHAKMEELKKLLANHRNQRVLIF- 361

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +   +      + +      IHG      +E +++ F+      L+AT V
Sbjct: 362 -------CKTKRTADDLEWQLKRWGYDAMAIHGDKEQRQREFILERFRKDPRLCLVATDV 414

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+D+ +   +I  +        +H++ GR GR         L   
Sbjct: 415 AARGLDIKELETVINYDFPMQIDDYVHRI-GRTGRAGAKGEAFTLITK 461


>gi|253682634|ref|ZP_04863431.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
 gi|253562346|gb|EES91798.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
          Length = 476

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 74/364 (20%), Positives = 137/364 (37%), Gaps = 39/364 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           ++ + + SPT+ QE  I   L+D         I++   GSGKT    I +   V      
Sbjct: 16  IKMLGYKSPTEVQEKVIPIALKDKD------IIVKSQTGSGKTASFGIPVCEKVLLENKK 69

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +I+ P   LA Q  E I    +  +I    + G  P + ++  L++    + HI++G
Sbjct: 70  PQVLILTPTRELAVQIKEDISNIGRFKKIKCVAVYGKEPVSIQKNQLKQ----RVHIVVG 125

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D I+           LI+   D+    G   +++   K      +         
Sbjct: 126 TPGRTFDHIEKGNMELSDIRYLIIDEADKMLNMGFIDQVEDVIKRLPKDRV--------- 176

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++  +  I K+  K     P K  I   N   ++IE+    +   +K   +   I 
Sbjct: 177 TMLFSATLEEKIEKLCVKYMN-NPEKIEISKKNITTDIIEQEYYEVESDRKFSLLNKIIY 235

Query: 494 EKKESNFRSVVERFNSL------HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            ++  +          +       ++       +HG M   D+  V+  FK G    L+A
Sbjct: 236 TERPDSCIIFCNTKAEVGSIAIKMKNKGFDTKALHGGMEQKDRLEVIQEFKRGRFPFLVA 295

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ + + +I         + +H++ GR GR       I L     ++   + 
Sbjct: 296 TDVAARGIDIEEITHVINYEVPSEKESYVHRI-GRTGRAGHKGKSITLVSEYENRRFKSI 354

Query: 608 LSVL 611
              +
Sbjct: 355 EEYI 358


>gi|238760236|ref|ZP_04621381.1| DEAD/DEAH box helicase domain protein [Yersinia aldovae ATCC 35236]
 gi|238701559|gb|EEP94131.1| DEAD/DEAH box helicase domain protein [Yersinia aldovae ATCC 35236]
          Length = 660

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 72/413 (17%), Positives = 146/413 (35%), Gaps = 45/413 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 22  LTDLGYEKPSPIQLECIPHLLNGRDV------LGMAQTGSGKTAAFGLPLLHNIDPTLKA 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  + +  ++++   + V  + G      R     R       +++
Sbjct: 76  PQVLVLAPTRELAIQVAQALTDFSKHMSGVNVVALYGG----QRYDVQLRALRQGPQVVV 131

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   L Q        L +AT 
Sbjct: 132 GTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTALFSATM 191

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +    V    N+ + ++  L+    +   
Sbjct: 192 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALVRFLESEDFDAAI 251

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +               + +E   +L     +S A+ +G M+   +E  +D  K+G   +
Sbjct: 252 IFV----------RTKNATLEVAEALERSGYNSAAL-NGDMNQALREQTLDRLKDGRLDI 300

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 301 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 359

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
                 +K T     +   + +   E  +         +   +  +++ +LL 
Sbjct: 360 QNVERTMKLTIPEVQLP--NAELLGERRLAKFAAKVGQQLESSDLDMYRALLA 410


>gi|161613874|ref|YP_001587839.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168230079|ref|ZP_02655137.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194471340|ref|ZP_03077324.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|161363238|gb|ABX67006.1| hypothetical protein SPAB_01610 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194457704|gb|EDX46543.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205335550|gb|EDZ22314.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 457

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 80/458 (17%), Positives = 167/458 (36%), Gaps = 58/458 (12%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVTLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKETVSLDAL-HILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   ++PI+  I  ++ +   IE+     S  +K   +   + + +    
Sbjct: 187 WPEAIAAISGR-VQQQPIRIEIDTVDALP-AIEQQFFETSAHEKISLLQTLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+  
Sbjct: 305 LDIKSLELVVNYELAWDPEVHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQLK 363

Query: 615 EDGF-LIAEEDL------------------KQRKEGEILGIKQSGMPKFLIAQP------ 649
            +     A + L                  K R  G+ILG   +G      A        
Sbjct: 364 LNWLNAPARQSLLPLAAEMATLCIDGGKKAKMR-PGDILGAL-TGDIGLDGADIGKINVH 421

Query: 650 --ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
              ++ ++ +   + A   L        ++G+S R+ L
Sbjct: 422 PMHVYVAVRQAVAQKAWKQLQN----GKIKGKSCRVRL 455


>gi|223937377|ref|ZP_03629282.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223893928|gb|EEF60384.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 437

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 139/372 (37%), Gaps = 44/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            PT  Q +AI  I+           I     G+GKT   ++ + A +        + G +
Sbjct: 23  EPTPIQAAAIPQIIAGHD------LIGIAQTGTGKTAAFVLPILAKLAGMKREANQRGIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   L  Q  E ++ Y+++  + V  + G + +  + +AL         ++I T 
Sbjct: 77  ALVVAPTRELVVQIEENVRAYSKHLPLKVATVFGGVGEHPQIQALRS----GVDMVIATP 132

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVL 437
               D +      +  +  +++DE  R      L   ++       ++ A P   +TL+ 
Sbjct: 133 GRLLDLMDRRHGDFSGINFLVLDEADRMLDMGFLPSIRQ-------IVKALPRKRQTLLF 185

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I  +T       P    I   +   E + +L   + +  K   +   + +   
Sbjct: 186 SATLSREIEGLTH-EFQHAPKTVQIGRRSNPAETVTQLVYEVPKHLKPALLVHLLRDPSM 244

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   +R     E+     A +H   S   +   +  FK+G  ++L+AT + 
Sbjct: 245 DMVLVFSRMKHSADRIARNLENKGIKTATLHSNRSQNQRLRALKDFKSGAVRVLVATDIA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL-----SKNSYT 606
             GIDV   S ++  +        +H++ GR GR   +   I            S   + 
Sbjct: 305 ARGIDVDGISHVVNYDFPMHAEDYVHRI-GRTGRAHAVGDAISFVTSEDHGTLRSLERFI 363

Query: 607 RLSVLKNTEDGF 618
              +++   +GF
Sbjct: 364 GRGIVRKKAEGF 375


>gi|330508037|ref|YP_004384465.1| ATP-dependent RNA helicase [Methanosaeta concilii GP-6]
 gi|328928845|gb|AEB68647.1| ATP-dependent RNA helicase, putative [Methanosaeta concilii GP-6]
          Length = 427

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 124/348 (35%), Gaps = 39/348 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q  AI  +L+          +     G+GKT   ++ +   + A          +
Sbjct: 23  TPTPIQMLAIPPLLEGKD------LLGIAQTGTGKTAAFVLPILQRMSAERRASRPGSPR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  +    Y +  +    +I G + Q  +   L R       I++ T 
Sbjct: 77  VLVLAPTRELAAQIGQSFATYGKFLRFRQLVIFGGVRQGPQVNMLSR----GVDILVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPR 433
               D      I+   +   ++DE  R      ++  ++           L  +AT    
Sbjct: 133 GRLLDLMNQGYIELKGVEFFVLDEIDRMLDMGFIRDVKRIVSALPEKHSSLFFSATLTRE 192

Query: 434 TLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           T  L      D   +   P+      I   +  +++  +    L ++L E  K   +  +
Sbjct: 193 TGELAQSLLNDPVHVQASPSACTLDSIDQQVFFVDQNSKNSLLLDLLLKEDMKRVLVFAR 252

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   ++   +          IHG  S   +   M+ F++G  ++L+AT + 
Sbjct: 253 T--------KHRADKVAQMLSKNRIQSDAIHGNKSQNQRTKTMERFRSGRIRVLVATDIA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             GID+ D + ++  +  +   + +H++ GR GR     +        
Sbjct: 305 ARGIDIDDITHVVNYDLPNEPESYVHRI-GRTGRAGASGNAFSFCSAE 351


>gi|330828193|ref|YP_004391145.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565]
 gi|328803329|gb|AEB48528.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565]
          Length = 459

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 78/470 (16%), Positives = 172/470 (36%), Gaps = 73/470 (15%)

Query: 259 GKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
               Q+ L ++ +   T  Q  ++  +L           I +   GSGKT    + + A 
Sbjct: 12  SPALQENLTSLGYLQMTPIQAQSLPLVLDGKD------LIAKAKTGSGKTAAFGLGLLAK 65

Query: 318 VEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAH 373
           +       QA+++ P   LA Q  + I++  +    + +  + G  P A +   L     
Sbjct: 66  LNVNRLEVQALVLCPTRELADQVAQEIRRLARALPNVKLVTLCGGTPTAPQSATL----S 121

Query: 374 GQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
             AHI +GT       ++           L+L   D     G  + +            +
Sbjct: 122 FGAHIAVGTPGRILKHLEQGTLELSGLKTLVLDEADRMLDMGFGEDIN----------RV 171

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           ++  P  R  +L S    +      +   R P++  +  ++     IE+    +  G++ 
Sbjct: 172 ISYAPERRQTLLFSATYPEGIAQMSRGVQRNPVEVSVESLHE-GSAIEQKLYEVPAGQRL 230

Query: 486 YWICPQIEEKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
             +   +   +        +  R+  +  + L     S++A+ +G +   +++ V+  F 
Sbjct: 231 DALTWLLSHYQPSSCVVFCNTKRACNDVADHLAAKGFSALAL-NGDLEQRERDQVLVRFA 289

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           NG+  +L+AT V   G+D+ +   +I     +     +H++ GR GR  +    + LY P
Sbjct: 290 NGSATILVATDVAARGLDIKELGAVINYELTYDPEVHVHRI-GRTGRAGQQGLALSLYQP 348

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQR----------------------KEGEILG- 635
                +     + +  +    + + D   R                      + G+ILG 
Sbjct: 349 ---NEAQRVNFIEEYQQAPMPLGDLDSIGRDIKPIAPQMVTLSIDAGRKTKVRAGDILGA 405

Query: 636 -IKQSGMPKFLIAQPELHDS--LLEIARKDAKHILTQDPDLTSVRGQSIR 682
              + G+    + + ++ +    + + R  A   L +  +   ++G+S R
Sbjct: 406 LTGEGGIAGADVGKIQISEQYSYVAVKRSVASAALKRLQE-GKIKGRSYR 454


>gi|190407035|gb|EDV10302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|207345345|gb|EDZ72198.1| YGL078Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259146428|emb|CAY79685.1| Dbp3p [Saccharomyces cerevisiae EC1118]
          Length = 523

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 144/383 (37%), Gaps = 45/383 (11%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
           +   P  PT  Q  A   +L           +   + GSGKT    +   + +       
Sbjct: 129 ISKFP-KPTPIQAVAWPYLLSGKDV------VGVAETGSGKTFAFGVPAISHLMNDQKKR 181

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q ++++P   LA Q Y+ +   T    +    + G +P+  +R  L++       +++
Sbjct: 182 GIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKS-----QVVV 236

Query: 381 GTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK------ATAPHVLLMTAT 429
            T     D     S+   ++  +++DE  R   +   +  +       A+    L+ TAT
Sbjct: 237 ATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTAT 296

Query: 430 PIPRTLVLTSLGDIDISKIT-------EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
                  L S    +  K++               I  V+ P  +  +++E LK   S  
Sbjct: 297 WPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGP 356

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           KK   +      KKE+       R     ++   ++A IHG +S   +   ++ FK+G  
Sbjct: 357 KKNEKVLIFALYKKEA------ARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKS 410

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+AT V   G+D+ +   +I           +H++ GR GR  +  +   L+      
Sbjct: 411 NLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRI-GRTGRAGQTGTAHTLFTEQEKH 469

Query: 603 NSYTRLSVLKNTEDGFLIAEEDL 625
            +   ++VL           EDL
Sbjct: 470 LAGGLVNVLNGAN---QPVPEDL 489


>gi|302388261|ref|YP_003824083.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302198889|gb|ADL06460.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 572

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 131/371 (35%), Gaps = 28/371 (7%)

Query: 240 LLLMRKQFKKEIGIPIN--VEGKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLR 296
            L +RK       +  +     +   + + ++ F   +  Q  AI        Q      
Sbjct: 4   RLAVRKDQAFMETVRFDELQLDERILRAVADMGFEEASPIQAQAIPV------QAEGRDI 57

Query: 297 ILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIV 352
           I Q   G+GKT    I +   ++      QAV + P   LA Q  + I++  +    + V
Sbjct: 58  IGQAQTGTGKTAAFGIPLLQKIDPKVKKLQAVALCPTRELAIQVADEIRRLAKYMHGVKV 117

Query: 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRL 412
             I G      + ++L+        IIIGT     D ++   +    V         + L
Sbjct: 118 VPIYGGQDIVKQIRSLKD----GTQIIIGTPGRVMDHMRRKTVKFDHVHTVIMDEADEML 173

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            +        +L        +T++ ++     I +I  K   + P+   ++        +
Sbjct: 174 NMGFLEDMETILSQL-PEERQTVMFSATMPPAIMEIARKF-QQDPVTVKVVKKELTVPKV 231

Query: 473 ERLKVVLSEGKKAYWICPQIEEK-------KESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
            +    +    K   +C  ++           +  + V E   +L      +  + HG +
Sbjct: 232 TQYYYEVKPKSKVEVMCRLLDMYAPKLSVAFCNTKKQVDELVQALQGRGYFAEGL-HGDL 290

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
             I ++ VM SF+NG  ++L+AT V   GIDV D   +   +        +H++ GR GR
Sbjct: 291 KQIQRDRVMGSFRNGKTEILVATDVAARGIDVDDVEAVFNYDLPQDDEYYVHRI-GRTGR 349

Query: 586 GEEISSCILLY 596
                      
Sbjct: 350 AGREGIAFSFV 360


>gi|294793457|ref|ZP_06758594.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 3_1_44]
 gi|294455027|gb|EFG23399.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 3_1_44]
          Length = 432

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 128/352 (36%), Gaps = 22/352 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE +I  + +          I +   G+GKTL  L+ +   V       Q +I+A
Sbjct: 24  EPTPIQEQSIPVVFKG------NDVIAKAQTGTGKTLAFLLPILQRVHTDVHQEQVLIIA 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L +Q  +  K+      + +  + G      + + L R    +  +I+GT     D
Sbjct: 78  PTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQLQQLGR----RPQVILGTPGRLLD 133

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +   L L  +         Q L +       +  L+  T   R L+L S    D  + 
Sbjct: 134 HAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIEN--LIGQTDANRQLLLFSATIPDKIRN 191

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVE 505
             K    KPI       +   E I++   +++  +K   +   IE+        F +  E
Sbjct: 192 LAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEKTQRLIKMIEDDNPFLAIVFCNKRE 251

Query: 506 RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
               L    T+   +IA +HG ++   +  ++  F     ++L+AT +   GID+   + 
Sbjct: 252 GAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITH 311

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +   +        +H++ GR GR       +    P            ++ T
Sbjct: 312 VYNYDVPRDVDYYIHRI-GRTGRAGNSGIAVTFATPQDEAWLRRIERAIQAT 362


>gi|323342311|ref|ZP_08082543.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463423|gb|EFY08617.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 594

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 70/361 (19%), Positives = 127/361 (35%), Gaps = 43/361 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ----AVIM 327
            PT  Q  AI  +L +         + Q   G+GKT    + M +  + G +    ++I+
Sbjct: 39  EPTDIQSQAIPILLGNHD------LLAQSQTGTGKTAAFGLPMLSLTQPGDKKRTNSLIL 92

Query: 328 APIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P   L  Q  E ++ +++    + +  + G  P   + + L+R     A I++ T    
Sbjct: 93  CPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQIRDLKR----GADIVVATPGRL 148

Query: 387 QDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLV 436
            D I+           ++L   DE    G  + ++               +AT     + 
Sbjct: 149 MDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEEIFSFLPEERQFAFFSATMPKEIVK 208

Query: 437 LTSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+    ++  +IT          IK +   +   D+V            +   +      
Sbjct: 209 LSEKFLVEPERITLSRNNLTVSRIKQIYYTVESRDKV--------DLTIQLLQLHKTSGT 260

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N + +V+   +           +HG M    +  VM  FK G   +LIAT V   G
Sbjct: 261 MIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVLIATDVAARG 320

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV    ++I  +        +H++ GR GR  +    I L        S  +   +K  
Sbjct: 321 IDVDSMDVVINYDIPQELEYYVHRI-GRTGRAGKEGLAITLV-------SRRQRYAIKQI 372

Query: 615 E 615
           E
Sbjct: 373 E 373


>gi|256422110|ref|YP_003122763.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256037018|gb|ACU60562.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 581

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 70/383 (18%), Positives = 139/383 (36%), Gaps = 41/383 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           ++++ F +PT  QE AI  +L           +     G+GKT    + +   ++     
Sbjct: 17  IQDLGFIAPTPIQEKAIPVLL-----GGDRDFVGLAQTGTGKTAAFGLPLLQQIDIKQRH 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +I+ P   L  Q    +K ++++   + +  + G      + + L+R      HI++
Sbjct: 72  PQGLILCPTRELCLQITNDLKNFSKHLGDVSIVAVYGGSSIVQQLRDLKR----GVHIVV 127

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATP 430
            T     D I+   +        +L   DE    G Q+ +   L+         L +AT 
Sbjct: 128 ATPGRLLDIIERKAVNFANVRYVVLDEADEMLNMGFQEDINNILSNTPEEKTTWLFSATM 187

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + D     +  K +G   I+     +   ++     ++V    +    I
Sbjct: 188 PQEVRRIAQKYMSDPFELTVGNKNSGNANIEHEYYVVRPREKYAALKRIVDYNPEIFGII 247

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +           E   SL      +   +HG ++   ++ VM  F+  + ++L+AT
Sbjct: 248 FTRTK-------IESQEIAESLIRDGY-NADALHGDLTQQQRDKVMKRFREKSLQVLVAT 299

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV + + +I            H+  GR  R  +    I +     +       
Sbjct: 300 DVAARGIDVDNVTHVINYELPDDVENYTHR-SGRTARAGKSGISIAIITGRDTGKIRQIE 358

Query: 609 SVL------KNTEDGFLIAEEDL 625
            V+       +  DGF + E+ L
Sbjct: 359 RVIGKKFTKVDVPDGFAVCEKQL 381


>gi|156053343|ref|XP_001592598.1| hypothetical protein SS1G_06839 [Sclerotinia sclerotiorum 1980]
 gi|160419162|sp|A7ENE0|PRP5_SCLS1 RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|154704617|gb|EDO04356.1| hypothetical protein SS1G_06839 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1114

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 75/392 (19%), Positives = 145/392 (36%), Gaps = 47/392 (11%)

Query: 265 ILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           +++ + +  PT  Q  AI  I+           I     GSGKT+  L+ M   +     
Sbjct: 497 VIKKLGYDKPTSIQMQAIPAIMSGRDV------IGVAKTGSGKTIAFLLPMFRHIRDQRP 550

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +IM P   LA Q ++  K + +   +      G      +   L+R     
Sbjct: 551 LKNSDGPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLKR----G 606

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A II+ T     + +           ++  V++DE  R           K          
Sbjct: 607 AEIIVCTPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIR---- 662

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++     +  + +K   + P++ V+   + +   I ++  V  E +K + 
Sbjct: 663 --PNRQTILFSATMPRIMDALAKKTL-QSPVEIVVGGRSVVAPEITQIVEVREEKEKFHR 719

Query: 488 ICPQI-------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSF 537
           +   +       E+ +   F    E+ + L +           IHG    +D++S +D F
Sbjct: 720 LLELLGELYNADEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQVDRDSTIDDF 779

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   ++IAT+V   G+DV    +++  +A +     +H+  GR GR     + +    
Sbjct: 780 KAGVVPIMIATSVAARGLDVKQLKLVVNFDAPNHLEDYVHR-AGRTGRAGNTGTAVTFIT 838

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
               + S      L+    G  + E   + RK
Sbjct: 839 EEQEQYSVGIAKALEQ--SGQEVPERLNEMRK 868


>gi|91228572|ref|ZP_01262491.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus 12G01]
 gi|269964706|ref|ZP_06178944.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|91187851|gb|EAS74164.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus 12G01]
 gi|269830605|gb|EEZ84826.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 459

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 80/449 (17%), Positives = 159/449 (35%), Gaps = 72/449 (16%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ ++  T  Q  ++  IL+          I QG  GSGKT    + + + +      
Sbjct: 19  LDSLNYTHMTPIQALSLPAILK------HRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 73  VQSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 128

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++  +        L+L   D     G Q  L           ++  A    
Sbjct: 129 GTPGRILDHLEKGRIDLSELNTLVLDEADRMLDMGFQDAL---------DAIIDAAPKQR 179

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I +I ++   + P    +   +    + +    V     +   +   +
Sbjct: 180 QTLLFSATFPEKIEQIAQR-IMQTPEVIKVESTHDTSSIAQYFYKVEGSEARDEALANLL 238

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              +        N +  V+       H   S+  IHG +   +++  +  F N +  +L+
Sbjct: 239 LTHQPESAVVFCNTKKEVQSVADELHHKGFSVIDIHGDLEQRERDQALVQFANKSVSILV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--------- 597
           AT V   G+DV +   +            +H++ GR GR          +          
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRI-GRTGRAGSKGLAFSFFGEKDGLRVAR 357

Query: 598 --------------PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG--IKQSGM 641
                         P  S     +  ++    DG        ++ + G+ILG    ++G+
Sbjct: 358 IEEYLEMDVVPATLPAKSNQQPYQAKMVTINIDGGKK-----QKVRPGDILGCLTGKNGI 412

Query: 642 PKFLIAQPELH--DSLLEIARKDAKHILT 668
           P   + +  L    + + + +  AK  L 
Sbjct: 413 PGSQVGKIHLFPVRAYVAVEKSVAKKALQ 441


>gi|59713337|ref|YP_206112.1| ATP-dependent RNA helicase DbpA [Vibrio fischeri ES114]
 gi|59481585|gb|AAW87224.1| ATP-dependent RNA helicase, specific for 23S rRNA [Vibrio fischeri
           ES114]
          Length = 462

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 90/458 (19%), Positives = 174/458 (37%), Gaps = 59/458 (12%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + +   T  Q  ++  +L+          I QG  GSGKT    + + A +      
Sbjct: 19  LETLGYNEMTPIQAQSLPFMLKGKDV------IAQGKTGSGKTAAFGLGLLANLNVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + I+K  +    I V  + G +P   +  +LE      AHII+
Sbjct: 73  VQSLVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLEH----GAHIIV 128

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQ--RLKLTQKATAPHVLLMTATP 430
           GT    ++ ++   L L  +        D     G Q      L         LL +AT 
Sbjct: 129 GTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDAVLDHAPVKRQNLLFSATF 188

Query: 431 IPRTLVLTSLGDID-ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P+   +      D I    E+      I      +   ++ +E L+++L + +      
Sbjct: 189 PPQIKSIADRIMNDPIMTKAEETVENTSINQHFFKVGDFEDRLEALQILLLKHQ------ 242

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           P+      +  R   E  + L  H+  S+  +HG +   D++  +  F N +  +L+AT 
Sbjct: 243 PESTVIFCNTKRVTQEVADELR-HYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATD 301

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     ++           +H++ GR GR       + L++     N      
Sbjct: 302 VAARGLDIESLDAVVNFELSRDPEVHVHRI-GRTGRAGNKGIALSLFNEKEMHNIAQIEE 360

Query: 610 VLK-NTEDGFLIAEEDLK-------------------QRKEGEILG--IKQSGMPKFLIA 647
            +  +  D  L + + LK                   + + G+ILG    + G+   ++ 
Sbjct: 361 YMNIDIRDEALPSTDYLKEPAYYAEMVTLWIDGGKKNKLRPGDILGALTGKDGIEGKMVG 420

Query: 648 QPELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           +  + D  + + +    AK  L +  +   ++G+S R+
Sbjct: 421 KINVFDFHAYVAVHNTVAKAALKKL-ESGKMKGRSFRV 457


>gi|88802750|ref|ZP_01118277.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88781608|gb|EAR12786.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 411

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 136/361 (37%), Gaps = 38/361 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +P+  Q+ AI  IL+      +   I+    G+GKT    + +   +  G  A       
Sbjct: 23  TPSLVQQEAIPLILE------KKNVIVSAQTGTGKTAAFALPIIQLLFDGQDAEKGEKKI 76

Query: 325 --VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +I+ P   LA Q  E  K +++ + +    + G +    +++ L +       I+I T
Sbjct: 77  KSLIITPTRELAIQILENFKSFSKYSNLRASAVFGGVSLEPQKEILSK----GIDILIAT 132

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D     +I    + + ++DE         +   +K               +TL+ 
Sbjct: 133 PGRLIDLHTQGNIDLSAIEIFVLDEADLMLDMGFINDIKKIERF------CPKQKQTLLF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK-- 495
           ++     I ++ +K   + P+   I P     + I +L   L +  K       ++    
Sbjct: 187 SATMPEKIVELAKKVI-KSPVVVEINPEETTAKNIGQLLYYLPKKNKTDLCLNLLKNTIN 245

Query: 496 -KESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            K   FR      + L E  T     +A IHG  +   +   ++ FKN T  +LIAT V 
Sbjct: 246 GKIIIFRRTKFGVDKLEESLTKNGYKVASIHGDKTQGIRNKAIEDFKNKTAHILIATDVA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ +   II  +  +     +H++ GR GR  +         P  +       +++
Sbjct: 306 SRGIDITNVDAIINFDIPNVPETYIHRI-GRTGRAGKSGIAFSFCSPDENAYIKLIETLI 364

Query: 612 K 612
           +
Sbjct: 365 E 365


>gi|325522216|gb|EGD00856.1| DEAD/DEAH box helicase [Burkholderia sp. TJI49]
          Length = 480

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 130/376 (34%), Gaps = 43/376 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L           +     G+GKT    + +   +   G        +
Sbjct: 23  TPTPVQAKAIPAVLGGQDV------MAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +    Y +   +      G +    +   L +       +++ T 
Sbjct: 77  VLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMKLRK----GVDVLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++Q+ ++  +++DE  R        L          +  A P  R  +L 
Sbjct: 133 GRLLDLNRQNAVQFDQVQTLVLDEADRM-------LDLGFARELDAVFAALPARRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +       R P+   + P N     I +  V + +  K       + E    
Sbjct: 186 SATFTDDIRAMAANILRAPVNISVSPPNATASKIRQWVVTVDKRNKPELFMHLVAENNWD 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +       RS V+   +  +    ++  IHG      +   ++ FK     +L+AT V  
Sbjct: 246 HALVFVKTRSGVDYLAARLDEAGYAVDTIHGDKPQPARLRALERFKQREVSMLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ D  ++I  +        +H++ GR GR       + L     +       ++++
Sbjct: 306 RGLDIDDLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIETLIR 364

Query: 613 NT-----EDGFLIAEE 623
            T     E GF  AE 
Sbjct: 365 QTLPREEEPGFE-AEH 379


>gi|311032733|ref|ZP_07710823.1| ATP-dependent RNA helicase [Bacillus sp. m3-13]
          Length = 449

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 141/346 (40%), Gaps = 20/346 (5%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  QE AI  IL           +++   G+GKTL  L+ +   ++      QA+I+AP 
Sbjct: 26  TPVQEQAIPVILDGKDV------LVESPTGTGKTLAYLLPIIERIDLSKQHPQALIVAPS 79

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q +E I+K+T+ ++I      G      + + L++    + HI++GT    Q+ I
Sbjct: 80  KELAMQIFEQIQKWTEGSEISGASFIGGANVKRQLEKLKK----KPHILVGTPGRLQELI 135

Query: 391 QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
           Q  K+ +  V +        +L + +       ++ ++    R L+L S    + ++   
Sbjct: 136 QMKKIKMHEV-KTIVMDEADQLFVPEHKKTIENIIKSSMQQERQLLLFSATLKEETEKQA 194

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE----- 505
               ++P+   +   +     +E L  V+ +  KA  +   + E        V +     
Sbjct: 195 VDLLKEPLVIKVTKEDLPPARVEHLYAVVDQRDKANVLANLLREPGIKALAFVRDIGNLA 254

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                  +   ++  +H   S  ++E+ M +F+     +L+AT V   G+D+ + S +I 
Sbjct: 255 VLTEKLLYKQLNVGFLHSESSKQERENAMKNFRKDEYPVLLATDVAARGLDIKELSHVIH 314

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            +      + +H+  GR GR     + I +      +        L
Sbjct: 315 YDLPEEVESYVHR-SGRTGRQGAEGTVISIVSEREERRLKQFAREL 359


>gi|302815317|ref|XP_002989340.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii]
 gi|300142918|gb|EFJ09614.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii]
          Length = 653

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 126/369 (34%), Gaps = 43/369 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q  A+  +L           I     GSGKT   ++ M   +          G   
Sbjct: 206 PTPIQCQALPIVLSGRD------IIGIAKTGSGKTAAFVLPMIVHIMDQEELGKGEGPIG 259

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI AP   LAQQ +   +K+ +   I V  + G M +  + K L+        I++ T  
Sbjct: 260 VICAPTRELAQQIFNESRKFAKPYGIRVSGVFGGMSKLDQFKELKAGCE----IVVATPG 315

Query: 385 LFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR- 433
              D ++   L        +L   D     G + +++    Q       LL +AT   R 
Sbjct: 316 RLIDMLKMKALTMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRRV 375

Query: 434 -TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            TL    L         E     + +  V   +    + ++ +   L +   A  +    
Sbjct: 376 ETLAREVLSAPVRVTAGEVGRANEDVTQVAQIVATDADKLQWMLSKLPQMVDAGDVLVFA 435

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  VE      +     +A +HG      +  V+  FK+G   +L+AT V  
Sbjct: 436 ST------KVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLVATDVAA 489

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+     ++  +        +H++ GR GR  +            +  +        
Sbjct: 490 RGLDIKSIKTVVNYDTAKDMDTHVHRV-GRTGRAGDKEGVAY------TLVAQKEARFAG 542

Query: 613 NTEDGFLIA 621
           +  +GF+ A
Sbjct: 543 DLVNGFVAA 551


>gi|126274138|ref|XP_001387431.1| RNA helicase involved in maturation of 18S rRNA [Scheffersomyces
           stipitis CBS 6054]
 gi|146286171|sp|A3GFV3|FAL1_PICST RecName: Full=ATP-dependent RNA helicase FAL1
 gi|126213301|gb|EAZ63408.1| RNA helicase involved in maturation of 18S rRNA [Pichia stipitis
           CBS 6054]
          Length = 399

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 76/355 (21%), Positives = 127/355 (35%), Gaps = 37/355 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P+  Q  AI  I+           I Q   G+GKT    I M  A++      QA+I++
Sbjct: 48  APSAIQSRAIMQIINGRDT------IAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILS 101

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +K       I      G        K L++       I+ GT     D
Sbjct: 102 PTRELAVQIQNVVKHLGDYMNIHTHACIGGTHVGDDIKKLKQGQ----QIVSGTPGRVVD 157

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLT 438
            ++           LIL   DE    G ++++         +  V++++AT     L +T
Sbjct: 158 MVKRQQLSTRNIKMLILDEADELFTKGFKEQIYEVYKYLPPSVQVVVVSATLSREVLEMT 217

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           +    D  KI  K      + IK   +   + D   + L  +       +A   C     
Sbjct: 218 NKFTTDPVKILVKRDQITLEGIKQYHVQCEKEDWKFDTLCDLYDNLTITQAVIFCNT--- 274

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V            ++  +HG M   +++S+M+ F+ G  ++LI+T V   G
Sbjct: 275 ------KLKVNWLTDQMRKQNFTVVSMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARG 328

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           IDV   S++I  +        +H++ GR GR       I L              
Sbjct: 329 IDVQQVSLVINYDLPTDKENYIHRI-GRSGRFGRKGVAINLITKEDVATLRDFEK 382


>gi|113477200|ref|YP_723261.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101]
 gi|110168248|gb|ABG52788.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101]
          Length = 495

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 132/358 (36%), Gaps = 31/358 (8%)

Query: 259 GKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +     L  I F  PT  Q  AI  +L+          + Q   G+GKT    + +   
Sbjct: 11  SEERANHLETIGFTEPTPIQAQAIPPLLEGKD------IVGQAQTGTGKTAAFSLPILEQ 64

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNT-------QIIVEIITGNMPQAHRRKA 367
           ++      QA+I+ P   LA Q  E I+++T          ++ V  + G      + + 
Sbjct: 65  IDIDTNAVQALILTPTRELALQVTEAIRQFTGINSKGPTKRRLFVLTVYGGQSIERQSQR 124

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L++      HI++GT     D +    L L  +         + L +        +L   
Sbjct: 125 LQK----GVHIVVGTPGRIIDMLNRNSLKLDHLKMMVLDEADEMLSMGFIQDVEKILEA- 179

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           A    +T   ++  D  I K+  K   + P+   +       + I +   +L  G     
Sbjct: 180 APAERQTAFFSATMDYSIRKLVNKYL-QSPVTVKVAQQKTTPKRITQTVYILPRGWSKGK 238

Query: 488 ICPQIEEKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
               I E ++          R       +  +    S+   HG ++   +E ++  F+N 
Sbjct: 239 ALQPILELEDPEAALIFVRTRQAAAELTNQLQSAGHSVDEYHGNLNQSQRERLLTRFRNQ 298

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             + ++AT +   G+DV   + +I  +      + +H++ GR GR     + I L HP
Sbjct: 299 QVRWVVATDIAARGLDVDHLTHVINYDLPDSVDSYVHRI-GRTGRAGREGTAISLIHP 355


>gi|332796635|ref|YP_004458135.1| DEAD/DEAH box helicase domain-containing protein [Acidianus
           hospitalis W1]
 gi|332694370|gb|AEE93837.1| DEAD/DEAH box helicase domain protein [Acidianus hospitalis W1]
          Length = 370

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 77/351 (21%), Positives = 143/351 (40%), Gaps = 39/351 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
           PTK QE AI  +LQ  S       + Q   GSGKT   LI +   +E   QA+++ P   
Sbjct: 41  PTKVQELAIPQMLQGKSV------LAQAKTGSGKTAAYLIPI---IEKEEQALVLTPTRE 91

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS--- 389
           LA+Q     +K  +  ++ + +I G +P + + K  ++       I+IGT     D    
Sbjct: 92  LAEQVANEARKLGKYKKMSIGVIIGGVPYSGQDKEAKK------DIVIGTPGRILDLWGK 145

Query: 390 -----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSLG 441
                 ++   I+  VD     G    +++  K   P +    +  +P    +L      
Sbjct: 146 GYLDLSRFSVAIVDEVDRMFDMGFIDDVRMILKNANPDMYGFFSATVPEEVESLAKEFSP 205

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           +I+  K+ +       I+ +   +    + I +LK  L + +K                +
Sbjct: 206 NIEFLKVDD--IKPVEIEHLFYEVKGWRDKISKLKDELDDNEKTIVFVNT--------KK 255

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
            V E +  L + F   I+++HG +    +   + SF+ G   +L++T +   GIDV+D +
Sbjct: 256 KVEELYEELRDDFE--ISLLHGDLPQRVRLRNLSSFRRGKTNVLLSTDLASRGIDVIDVT 313

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +I  +        +H++ GR GR       I  Y    ++       ++K
Sbjct: 314 KVINFDTPRDVETYIHRV-GRTGRMGRKGIAITFYTRRDAQLILKIKDLIK 363


>gi|261820134|ref|YP_003258240.1| ATP-dependent RNA helicase DeaD [Pectobacterium wasabiae WPP163]
 gi|261604147|gb|ACX86633.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 632

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 77/409 (18%), Positives = 150/409 (36%), Gaps = 40/409 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LTDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFALPLLNNLKPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    + ++   + V  + G      R     R   G A I++
Sbjct: 75  PQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGG----QRYDVQLRALRGGAQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPATHQTALFSATM 190

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + D    +I      R  I      +  + +    ++ + +E   A  I
Sbjct: 191 PEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAII 250

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +LIAT
Sbjct: 251 FVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDILIAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 303 DVAARGLDVERISLVVNYDIPMDAESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNVE 361

Query: 609 SVLKNTEDGFLIAEEDLK-QRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             +K T     +   +L  QR+  +     Q    +   +  +++ +LL
Sbjct: 362 RTMKLTIPEVELPNAELLGQRRLAKFAAKVQ---QQLESSDLDMYRALL 407


>gi|189188996|ref|XP_001930837.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187972443|gb|EDU39942.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1165

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 142/382 (37%), Gaps = 49/382 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  AI               I     GSGKTL   I M   +          G  
Sbjct: 545 KPTAIQSQAIPIAESGRD------LIGVAKTGSGKTLAFGIPMIRHILDQRPLKPSDGPI 598

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   L+ Q    +K +   + I ++   G  P + +   L+R   G  HI+  T 
Sbjct: 599 GLILAPTRELSLQIVHELKPFLAASGITIKCAYGGQPISEQIAMLKR---GGIHILCATA 655

Query: 384 ALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D I         + ++  V++DE  R           K      +L    P  +T+
Sbjct: 656 GRLIDLISCNSGRVLSFKRITYVVLDEADRMFDMGFEPQVMK------ILANVRPDRQTI 709

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW------IC 489
           + ++    ++  + +K A + P++ +I   +++   I ++  V+              + 
Sbjct: 710 LFSATMPKNMHALAKK-ALKDPVEIIIGGKSKVAAEITQIISVVPPSYDKKINNTLLHLG 768

Query: 490 PQIEEKKESNFRSVVER-------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +E + +      ER        + L++    S+  IHG     D+   +  FK G  
Sbjct: 769 RLFDEDENAQVLIFTERQETAEDLLSKLYKAKYFSVNTIHGAKDQTDRNEAISDFKQGVL 828

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPLS 601
            +LIAT+V   G+DV   +++   +        +H+  GR GR     + I L  +P   
Sbjct: 829 SILIATSVAARGLDVPGLAMVFNFDCPTHLEDYVHR-CGRTGRAGNKGTAITLIENPGQE 887

Query: 602 KNSYTRLSVLKNTEDGFLIAEE 623
           + +      LK  E G  + EE
Sbjct: 888 RFAVHIAKALK--ESGTEVPEE 907


>gi|162148995|ref|YP_001603456.1| cold-shock DEAD box protein A [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545253|ref|YP_002277482.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787572|emb|CAP57168.1| putative cold-shock DEAD box protein A [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532930|gb|ACI52867.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 423

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 127/346 (36%), Gaps = 35/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q  AI  +L           +     G+GKT    + +   +          G +
Sbjct: 24  TPTPIQAGAIPHLLAGRD------LLGLAQTGTGKTAAFALPILQRLLTHHRRANPKGAR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  E  K Y ++ ++   +I G + Q  + +A+ R       +++   
Sbjct: 78  VLVLAPTRELASQIDESFKSYARHMRLSHTVIFGGVGQGRQVEAMRR----GVDVLVAAP 133

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D      I    L ++++DE  R      ++          ++       +TL+ +
Sbjct: 134 GRLLDLMGQGHIDLSGLEVLVLDEADRMLDMGFVRDI------RRIVAELPRDRQTLLFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK----KAYWICPQIEE 494
           +     I+ +            V  P + +D + + +  V ++ K    +     P++E 
Sbjct: 188 ATMPKSIADLAHGLLRDPATVQVTPPSSTVDRIRQAVMFVDTDNKRAALQLLVDSPKVER 247

Query: 495 KKESN-FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    +  +           IHG  S   +E  M  F++G  K+L+AT +   
Sbjct: 248 AVVFTLMKHEANKVAAFLNDHGIIAEAIHGNKSQGARERAMAGFRSGAVKVLVATDIAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV D + +   +  +   + +H++ GR  R       + L    
Sbjct: 308 GIDVDDVTHVFNYDLPNVPESYVHRI-GRTARAGRDGWAVSLCDAE 352


>gi|77918185|ref|YP_356000.1| DNA/RNA helicase [Pelobacter carbinolicus DSM 2380]
 gi|77544268|gb|ABA87830.1| DNA/RNA helicase, ATP-dependent, DEAD-box family [Pelobacter
           carbinolicus DSM 2380]
          Length = 432

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/380 (17%), Positives = 141/380 (37%), Gaps = 29/380 (7%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
             N   ++A+ I+     +PT  Q  AI  ++        ++ + Q   G+GKT    + 
Sbjct: 5   SFNFHPQVAKGIVAAGYVTPTPIQAQAIPSVIDG----RDVMGLAQ--TGTGKTAAFALP 58

Query: 314 MAAAVEAGGQ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +   +  G +    A+++AP   LA+Q ++ I +  ++T +    + G +    +   L+
Sbjct: 59  ILQRLIDGPRGRLRALVVAPTRELAEQIHQAIGELGRHTGLRSMTVYGGVNIRPQIAGLK 118

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           R       I++       D I    + L  + E        ++       A   +L    
Sbjct: 119 R----GVDIVVACPGRLIDHIGQKTIDLSNI-EVLVLDEADQMFDMGFFPAVRQILRHVP 173

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              +TL+ ++     I +++ +        TV +      E +      +++ +K   + 
Sbjct: 174 AQRQTLLFSATMPAAIRRLSGEVLTSP--MTVQVGNTTPAETVSHALYPVAQHQKTAMLL 231

Query: 490 PQ---IEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCK 543
                ++ +    F     R   L      +      + G +S   ++  +  F++G  +
Sbjct: 232 ELLSAVDSRSVLVFTRTKHRAKRLGLQLGKAGYQATSLQGNLSQARRQEALTGFRDGKYE 291

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT +   GIDV   S +I  +      A +H++ GR GR         L     +  
Sbjct: 292 ILVATDIAARGIDVSQVSHVINYDIPDTAEAYVHRI-GRTGRASRKGEAFTLVTGEDNAM 350

Query: 604 SYTRLSVL-----KNTEDGF 618
                 VL     + T +GF
Sbjct: 351 VRAIEKVLDASLERRTIEGF 370


>gi|323355122|gb|EGA86952.1| Dbp3p [Saccharomyces cerevisiae VL3]
          Length = 537

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 144/383 (37%), Gaps = 45/383 (11%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
           +   P  PT  Q  A   +L           +   + GSGKT    +   + +       
Sbjct: 129 ISKFP-KPTPIQAVAWPYLLSGKDV------VGVAETGSGKTFAFGVPAISHLMNDQKKR 181

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q ++++P   LA Q Y+ +   T    +    + G +P+  +R  L++       +++
Sbjct: 182 GIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKS-----QVVV 236

Query: 381 GTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK------ATAPHVLLMTAT 429
            T     D     S+   ++  +++DE  R   +   +  +       A+    L+ TAT
Sbjct: 237 ATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTAT 296

Query: 430 PIPRTLVLTSLGDIDISKIT-------EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
                  L S    +  K++               I  V+ P  +  +++E LK   S  
Sbjct: 297 WPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGP 356

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           KK   +      KKE+       R     ++   ++A IHG +S   +   ++ FK+G  
Sbjct: 357 KKNEKVLIFALYKKEA------ARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKS 410

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+AT V   G+D+ +   +I           +H++ GR GR  +  +   L+      
Sbjct: 411 NLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRI-GRTGRAGQTGTAHTLFTEQEKH 469

Query: 603 NSYTRLSVLKNTEDGFLIAEEDL 625
            +   ++VL           EDL
Sbjct: 470 LAGGLVNVLNGAN---QPVPEDL 489


>gi|260168758|ref|ZP_05755569.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           F5/99]
          Length = 535

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 143/393 (36%), Gaps = 40/393 (10%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R   D   A  +  + + K+        + + G + + +       P   Q  AI   L
Sbjct: 64  RRFKADRECAVPLKEIELTKENTGG-FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQL 122

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
           +          +     GSGKT    + +   +            +A+I+AP   LA Q 
Sbjct: 123 EGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQI 176

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+  +++  I   ++ G + +  + K +         ++I T     D +       
Sbjct: 177 EQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATPGRLTDLMRDGLVDL 232

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISK 447
            Q   L+L   D     G    +K   KAT       L +AT       L      D  +
Sbjct: 233 SQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVR 292

Query: 448 ITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P G     I  V+ P+   ++      ++     ++  +  + +   ++  R    
Sbjct: 293 VEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGADAVVRH--- 349

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 E     +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV  +S ++ 
Sbjct: 350 -----LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGSSHVVN 404

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +        +H++ GR GR     + I LY P
Sbjct: 405 YDPPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|224031067|gb|ACN34609.1| unknown [Zea mays]
          Length = 414

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 126/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 63  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 116

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 117 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILGS----GVHVVVGTPGRVFD 172

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 173 MLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEIT 232

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ D  ++ L          Y      +   
Sbjct: 233 RKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTL-------CDLYETLAITQSVI 285

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 286 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 345

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 346 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRD 387


>gi|241959442|ref|XP_002422440.1| ATP-dependent rRNA helicase, putative; ribosomal RNA-processing
           protein, putative [Candida dubliniensis CD36]
 gi|223645785|emb|CAX40447.1| ATP-dependent rRNA helicase, putative [Candida dubliniensis CD36]
          Length = 499

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 127/341 (37%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMA 328
            PT  Q  AI   L+          I     GSGKT    I +  ++    Q   A+++A
Sbjct: 108 KPTPIQSEAIPHALEGKD------IIGLAQTGSGKTAAFAIPILQSLWHAQQPYFALVLA 161

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  +       +  +    I G M    + + L R    + HII+ T     D
Sbjct: 162 PTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMR----KPHIIVATPGRIMD 217

Query: 389 SIQY------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            +++        L  +++DE  R           K       ++   PI R   L S   
Sbjct: 218 HLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDK-------ILKVIPIKRITYLFSATM 270

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE------KK 496
            +  +  ++ +   P+K  +    +  + + +  +++++G K   +   + E        
Sbjct: 271 TNKIEKLQRASLHNPVKVSVSSKYQTADNLIQSMMLVNDGYKNTILIHLLNEFIGKSIIV 330

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +   +  +R   L      +   +HG++S   +   ++ FK+    +L+AT V   G+D
Sbjct: 331 FTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLD 390

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +    I+I  +      A +H++ GR  R       I L  
Sbjct: 391 IPSVDIVINYDIPTDSKAYIHRV-GRTARAGRSGKSISLIT 430


>gi|254457659|ref|ZP_05071087.1| putative helicase [Campylobacterales bacterium GD 1]
 gi|207086451|gb|EDZ63735.1| putative helicase [Campylobacterales bacterium GD 1]
          Length = 423

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 66/339 (19%), Positives = 121/339 (35%), Gaps = 27/339 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            PT  Q+ AI  IL      NR   +     G+GKT    + M   +        +   +
Sbjct: 23  EPTPIQKQAIPVIL------NRKDILAGAQTGTGKTAGFTLPMLELLSRAKHTSGKHHVK 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  E ++ Y ++      +I G +    +   L +       I+I T 
Sbjct: 77  ALILTPTRELAAQVAESVEVYGKHLPFKSCVIFGGVKINPQIVQLRK----GIDIVIATP 132

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D I    + L  VD         R+           +L       + L+ ++    
Sbjct: 133 GRLLDHISQKTIDLSKVD-FLILDEADRMLDMGFINDIRKILEILPKQRQNLLFSATYSD 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---- 499
           +I K++++     P    +   N   E +++    + + +K   +   I + K       
Sbjct: 192 EIKKLSDRLLN-SPTLIEVARRNTASETVKQAVYPVDKERKRELLTHLINDGKWKQVLVF 250

Query: 500 --FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +    R +   E    + A IHG  S   +   +  FK    ++L+AT +   GID+
Sbjct: 251 TRTKHGANRLSDQLEKDGITSAAIHGNKSQNARTKALADFKKSEVRVLVATDIAARGIDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
                ++     +     +H++ GR GR       I L 
Sbjct: 311 DQLPHVVNYELPNVSEDYVHRI-GRTGRAGNEGEAISLV 348


>gi|194365407|ref|YP_002028017.1| ATP-dependent RNA helicase DbpA [Stenotrophomonas maltophilia
           R551-3]
 gi|194348211|gb|ACF51334.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 458

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 87/466 (18%), Positives = 165/466 (35%), Gaps = 57/466 (12%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
               Q  L  + ++  T  Q  ++  IL           I Q   GSGKT    + +  A
Sbjct: 10  SPALQPGLDALGYTTLTPVQAQSLPAILDGRDV------IAQAPTGSGKTAAFGLGLLQA 63

Query: 318 VEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           ++      QA+++ P   LA Q  + I+K    T I    +   +        L  +   
Sbjct: 64  IDPSLIRVQALVLCPTRELADQVGKQIRKLA--TGIPNLKLLLLVGGVPLGPQLASLEGH 121

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHV--L 424
             H+++GT    Q+  +   L L  V        D     G ++ ++     T      L
Sbjct: 122 DPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAGRTHKDRQSL 181

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKP-IKTVIIPINRIDEVIERLKVVLSEGK 483
           L +AT       +      +  ++T + A + P I+ +   +           ++L    
Sbjct: 182 LFSATFPDSIRAMARDLLREAVEVTVEGADQAPAIRHMFCEVEPAHRQKALAGLLLKYTP 241

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           ++  +          N R  V+   +  + F  S   +HG M   D+E V+    N +C 
Sbjct: 242 ESAVVF--------CNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCN 293

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+A+ V   G+DV + + +I         +  H++ GR GR       I L        
Sbjct: 294 VLVASDVAARGLDVEELAAVINYELPTDVESYQHRV-GRTGRAGASGLAISLVAGREKTR 352

Query: 604 SYTRLSVLKNTEDGFLI-------------AEEDLKQ-------RKEGEILG--IKQSGM 641
           +    + +    D                 A   L+         + G+ILG     +G+
Sbjct: 353 AEAIEAQMGQPLDWQKTPLATSRPAELPQAAMRTLRIDGGKTDKLRPGDILGALTGDAGL 412

Query: 642 PKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
               I +  +    S + IAR+ A   + +  +   ++G+  R+ +
Sbjct: 413 SSKFIGKIAIFPTRSYVAIAREQANKAVAKL-EAGKIKGRRFRVRM 457


>gi|6321360|ref|NP_011437.1| Dbp3p [Saccharomyces cerevisiae S288c]
 gi|1708151|sp|P20447|DBP3_YEAST RecName: Full=ATP-dependent RNA helicase DBP3; AltName: Full=DEAD
           box protein 3; AltName: Full=Helicase CA3
 gi|172582|gb|AAA73137.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|1322595|emb|CAA96783.1| DBP3 [Saccharomyces cerevisiae]
 gi|285812127|tpg|DAA08027.1| TPA: Dbp3p [Saccharomyces cerevisiae S288c]
          Length = 523

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 144/383 (37%), Gaps = 45/383 (11%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
           +   P  PT  Q  A   +L           +   + GSGKT    +   + +       
Sbjct: 129 ISKFP-KPTPIQAVAWPYLLSGKDV------VGVAETGSGKTFAFGVPAISHLMNDQKKR 181

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q ++++P   LA Q Y+ +   T    +    + G +P+  +R  L++       +++
Sbjct: 182 GIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKS-----QVVV 236

Query: 381 GTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK------ATAPHVLLMTAT 429
            T     D     S+   ++  +++DE  R   +   +  +       A+    L+ TAT
Sbjct: 237 ATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTAT 296

Query: 430 PIPRTLVLTSLGDIDISKIT-------EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
                  L S    +  K++               I  V+ P  +  +++E LK   S  
Sbjct: 297 WPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGP 356

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           KK   +      KKE+       R     ++   ++A IHG +S   +   ++ FK+G  
Sbjct: 357 KKNEKVLIFALYKKEA------ARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKS 410

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+AT V   G+D+ +   +I           +H++ GR GR  +  +   L+      
Sbjct: 411 NLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRI-GRTGRAGQTGTAHTLFTEQEKH 469

Query: 603 NSYTRLSVLKNTEDGFLIAEEDL 625
            +   ++VL           EDL
Sbjct: 470 LAGGLVNVLNGAN---QPVPEDL 489


>gi|1183961|emb|CAA93395.1| RNA elicase [Saccharomyces cerevisiae]
          Length = 547

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 132/369 (35%), Gaps = 44/369 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L        M+ I     GSGKTL   +     + A        G  
Sbjct: 135 KPTGIQCQGWPMAL----SGRDMVGI--AATGSGKTLSYCLPGIVHINAQPLLAPGDGPI 188

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q      K+  +++I    + G +P++ + + L R +     I+I T 
Sbjct: 189 VLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSE----IVIATP 244

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D ++  K        L+L   D     G + +++    Q       L+ +AT    
Sbjct: 245 GRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 304

Query: 434 TLVLTSLGDIDISKI------TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              L +    D  ++               I  V+    + D + + L+    + +    
Sbjct: 305 VKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTL 364

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I         S  R   +    L E    ++AI HG     +++ V+  F+NG   +++A
Sbjct: 365 IF-------ASTKRMCDDITKYLREDGWPALAI-HGDKDQRERDWVLQEFRNGRSPIMVA 416

Query: 548 TTVIEVGI-DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           T V   GI +V   + +I  +        +H++ GR GR     + I  +          
Sbjct: 417 TDVAARGIGNVKGINYVINYDMPGNIEDYVHRI-GRTGRAGATGTAISFFTEQNKGLGAK 475

Query: 607 RLSVLKNTE 615
            +S+++   
Sbjct: 476 LISIMREAN 484


>gi|116693760|ref|YP_839293.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|116651760|gb|ABK12400.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 507

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 134/377 (35%), Gaps = 45/377 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L           +     G+GKT    + +   +   G        +
Sbjct: 46  TPTPVQAKAIPVVLGGKDV------MAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRAR 99

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +   +Y +   +      G +    +   L +       +++ T 
Sbjct: 100 VLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMKLRK----GVDVLVATP 155

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGV-----QQRLKLTQKATAPHVLLMTATPIPR 433
               D     ++Q+ ++  +++DE  R        +              LL +AT    
Sbjct: 156 GRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKRQTLLFSATFSDE 215

Query: 434 TLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              + +        I+  P       IK  ++P+++ ++      + +    +  W    
Sbjct: 216 IRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNK----PDLFMHLVAQNRWEHAL 271

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +        R+ V+    + E    ++  IHG      +   ++ FK G  ++L+AT V 
Sbjct: 272 V----FVKTRNGVDYLALMLEKTGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVA 327

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D  ++I  +        +H++ GR GR       + L     +       +++
Sbjct: 328 ARGLDIDDLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALI 386

Query: 612 KNT-----EDGFLIAEE 623
           + T     E GF  AE 
Sbjct: 387 RQTLRREEEPGFE-AEH 402


>gi|330838649|ref|YP_004413229.1| DEAD/DEAH box helicase domain protein [Selenomonas sputigena ATCC
           35185]
 gi|329746413|gb|AEB99769.1| DEAD/DEAH box helicase domain protein [Selenomonas sputigena ATCC
           35185]
          Length = 446

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 120/337 (35%), Gaps = 30/337 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  QE AI  +            I+Q   G+GKTL  L+ +   ++      QA++++P 
Sbjct: 25  TLVQEQAIPAVRSGRD------AIVQAQTGTGKTLAFLLPLLERIKGNARVAQALVVSPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q     K       I   ++ G      ++  L +    +  +II T     D +
Sbjct: 79  RELAMQTARVAKTLADAVGIRTALVYGGQDIERQKDKLRQ----KPQLIIATPGRLLDHL 134

Query: 391 QYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLTSL 440
           + +        K++L   DE  R G  + +   L   A    ++L +AT   R   LT  
Sbjct: 135 RRHSVELSQVNKIVLDEADELMRLGFVEDVETMLEALAGDHQLMLFSATMPERIRALTRR 194

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
              +  +IT +P          + ++  ++        L    + Y            + 
Sbjct: 195 YMKEPREITVQPECVTLANIEQVIVDTREDTKLDKLCELLNKYQPYLAMVF------CHT 248

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           +  V             +  +HG ++   +  VM  F+    ++L+ T +   G+D+   
Sbjct: 249 KQKVAHVTLELAGRGYLVDELHGDLTQTQRNLVMRRFREAKLQILVVTDIAARGLDIEGV 308

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + +   +        +H++ GR GR       +   +
Sbjct: 309 THVFNYDLPQDTEWYIHRI-GRTGRAGAKGLAVTFVN 344


>gi|327481186|gb|AEA84496.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166]
          Length = 556

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 135/345 (39%), Gaps = 39/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q  AI  IL           I Q   G+GKT    + + + ++      QA+I+A
Sbjct: 28  EPSPIQAQAIPVILGGHD------MIGQAQTGTGKTAAFALPILSKIDPAKREPQALILA 81

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y++    + V  I G  P   + KA+ +     A +I+ T     
Sbjct: 82  PTRELALQVATAFETYSKQMPDVSVVAIYGGAPMGPQLKAIRQ----GAQVIVATPGRLV 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D +            L+L   DE  + G    L++  +A              ++++ ++
Sbjct: 138 DHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPE---------SRQSVLFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I  I EK   R+P    I    +    IE+  +++   +K   +   +E +    
Sbjct: 189 TLPHSIRAIAEKHL-REPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLLEVEDFDA 247

Query: 500 FRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
             + V          +  E      A ++G ++   +E V++S K+G   +++AT V   
Sbjct: 248 LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           G+DV   + +   +  +   + +H++ GR GR       +LL  P
Sbjct: 308 GLDVARITHVFNVDMPYDPESYVHRI-GRTGRAGREGRALLLVTP 351


>gi|218548978|ref|YP_002382769.1| ATP-dependent RNA helicase DbpA [Escherichia fergusonii ATCC 35469]
 gi|218356519|emb|CAQ89142.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia
           fergusonii ATCC 35469]
          Length = 457

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 81/454 (17%), Positives = 166/454 (36%), Gaps = 50/454 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDIR------VQAKTGSGKTAAFGLGLLQHIDATLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGIQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLEAL-HTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +  V E+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLTIEIDSTDALPPV-EQHFYETSSSGKISLLQRLLSVYQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK-N 613
           +D+    +++           +H++ GR  R  +    I    P  ++ +     +L+  
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGKSGLAISFCAPEEAQRANIISDMLQLK 363

Query: 614 TEDGFLIA----------EEDL--------KQRKEGEILGIKQS--GMPKFLIAQPELHD 653
                  A             L        K R  G++LG      G+    I +  +H 
Sbjct: 364 LNWQMPPAVTTIVPLAAEMATLCIDGGKKAKMR-PGDVLGALTGDIGLDGADIGKITVHP 422

Query: 654 S--LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +   + + ++ A     Q  D   ++G++ R+ L
Sbjct: 423 AHVYVAVRQEVAHKAWKQLQD-GKIKGKTCRVRL 455


>gi|213409157|ref|XP_002175349.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Schizosaccharomyces japonicus yFS275]
 gi|212003396|gb|EEB09056.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Schizosaccharomyces japonicus yFS275]
          Length = 672

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/383 (17%), Positives = 136/383 (35%), Gaps = 51/383 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
            P+  Q +AI  +LQ      R   I   + GSGKT   +I +   +             
Sbjct: 278 EPSAIQRAAIPLLLQ------RNDIIGIAETGSGKTAAFVIPLVTHISRLPALDDTNMHL 331

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+I+AP   LAQQ      K+++   +    + G      +           AHI++
Sbjct: 332 GPYAIILAPTRELAQQIQVEASKFSEPLGLRCVAVVGGHAFEEQ----SFQMSQGAHIVV 387

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK------------LTQKATA 420
            T     D ++           +++   D     G ++ +               +   A
Sbjct: 388 ATPGRLVDCLERRVFVLSQCYFVVMDEADRMVDMGFEEDVNKALTSLPPSGHDDDEAMVA 447

Query: 421 PHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAG---RKPIKTVIIPINRIDEVIERL 475
              LL +  P    +T++ ++     +  + ++         I T+   ++R+++ +E +
Sbjct: 448 GEDLLRSTRPTRARQTVMFSATLPTRVENLAKRYLNKPIMLTIGTIGQAVDRVEQRVEMI 507

Query: 476 KVVLSEGKKAYWICPQIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
                  K+   I              N +   E       +    +  +HG  S   +E
Sbjct: 508 ADDAKRRKRLEEILNTNRYAPPIVVFVNLKRNCESLAKALYNMGWRVVTLHGSKSQEQRE 567

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             ++  +N +  +L+AT +   GID+ + S+++  N         H++ GR GR  +  +
Sbjct: 568 RAIEQLRNHSADILVATDLAGRGIDIPNVSLVVNYNMAKSIEDYTHRI-GRTGRAGKHGT 626

Query: 592 CILLYHPPLSKNSYTRLSVLKNT 614
            I    P  +   Y    +L  +
Sbjct: 627 AITFLGPEDTGVYYDLRLMLSKS 649


>gi|167574569|ref|ZP_02367443.1| ATP-dependent RNA helicase DbpA [Burkholderia oklahomensis C6786]
          Length = 465

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 153/433 (35%), Gaps = 58/433 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  Q +++   L           I Q   GSGKT    + + A ++A     QA+++ P 
Sbjct: 32  TPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLPLLARLDARRFDVQAMVLCPT 85

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + I++  +    + V  + G  P   +  +LE      AHI++GT     D 
Sbjct: 86  RELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEH----GAHIVVGTPGRIMDH 141

Query: 390 IQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           ++   L L      ++DE  R                           +TL+ ++     
Sbjct: 142 LERGSLALGALNTLVLDEADRMLDMGFFDDIATVARQ------CPKERQTLLFSATYPDG 195

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------S 498
           I+K++++       K V +     D  I +    ++E ++ + +   +   +        
Sbjct: 196 IAKLSQQFLRNP--KEVKLEERHEDSKIRQRFYEVTEDERLHAVGMLLNHYRPVSTLAFC 253

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           N +        +          +HG +   +++ V+  F N +C +L+AT V   G+D+ 
Sbjct: 254 NTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIA 313

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
               +I  +        +H++ GR GR ++    + L          +     K   +  
Sbjct: 314 QLEAVINVDVTPDPEVHVHRI-GRTGRADQDGWALSLASMNEMGRVGSIEQAQKRDVEWH 372

Query: 619 LIA-------------EEDLKQRK-------EGEILG--IKQSGMPKFLIAQP--ELHDS 654
            +A              E L+           G++LG    ++G     I +       +
Sbjct: 373 PLAELEAESDAPLLPPMETLQILGGRKEKIRPGDVLGALTGEAGFSGAQIGKINVTEFST 432

Query: 655 LLEIARKDAKHIL 667
            + + R  A+  L
Sbjct: 433 YVAVERSIARDAL 445


>gi|167569331|ref|ZP_02362205.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
          Length = 411

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 70/364 (19%), Positives = 125/364 (34%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAKAIPVVLSGRDV------MGAAQTGTGKTASFSLPIIQRLLPQASTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       ++I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEVLI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    A    +  ++  +   D+    +K++     K   +
Sbjct: 203 SPEIKKLASTYLRNPQTIEVARSNATATNVTQIVYDVAEGDKQAAVVKLIRDRALKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      + IHG  S  ++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARQIERDGIVASAIHGDRSQSERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+V+   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIVELPAVINFDLPFSAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 373

Query: 609 SVLK 612
            ++K
Sbjct: 374 KLIK 377


>gi|217974215|ref|YP_002358966.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217499350|gb|ACK47543.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 412

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 128/358 (35%), Gaps = 43/358 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           L ++ +  PT  Q  AI  IL       +   +     G+GKT    + +   + A    
Sbjct: 16  LASLGYESPTPIQLEAIPAILA------KRDVMAGAQTGTGKTAAFALPILHHLLALSPL 69

Query: 321 -------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                    +A+++ P   LA Q  +   KY + T I V I  G +    +        +
Sbjct: 70  QELTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAV----FN 125

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHV 423
               ++I T     D ++   L L  +        D     G    ++  L Q  +    
Sbjct: 126 AGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQT 185

Query: 424 LLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           LL +AT       L  T L D  + ++ ++      I+ V+  ++   +      +V S+
Sbjct: 186 LLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDADRKTELVSHLVRSK 245

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 I  +         +  V++               HG +S   +E V+  FK G 
Sbjct: 246 NWHQVLIFSRT--------KQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGK 297

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            ++L+AT V   G+D+V+   +I           +H++ GR GR       I L+   
Sbjct: 298 IQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRI-GRTGRAGSTGLAITLFSQE 354


>gi|110004511|emb|CAK98848.1| putative atp-dependent rna helicase protein [Spiroplasma citri]
          Length = 443

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 144/390 (36%), Gaps = 44/390 (11%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
              Q+++  + ++  T+ QE AI   L      N    I +   G+GKT+  ++ +   +
Sbjct: 10  PALQRMIAKMGYTNLTEIQEKAIPVAL------NSQDIIGKSHTGTGKTVAFIVPILQNL 63

Query: 319 EAG---GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHG 374
                  QA+I+ P   LA Q  E ++K+      +   +I G      +  AL +    
Sbjct: 64  NTHLKQPQAIILCPTHELASQIIEQVRKFATYLEGVNATLICGGSHIQRQIYALRKS--- 120

Query: 375 QAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVL 424
             +II+GT     D I    L        +L   DE  + G +  L             L
Sbjct: 121 --NIIVGTPGRIADHINRKTLRLDKIKTIVLDEADEMLKMGFKTDLDKVFQNAPNKYQTL 178

Query: 425 LMTATPIPRTLVLTSLGDIDISKI--TEKPAGRKPIKTVII---PINRIDEVIERLKVVL 479
           L +AT   + L + +    +  +I  T+    +  I    +     ++ D +I   K + 
Sbjct: 179 LFSATMPKQVLEIANNYQTNPVEIVVTKNVIEQNNISQHYVNAISYHKEDVLIALYKHLQ 238

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +    +           SN +    +   +  +      II+G  S  ++   M  F++
Sbjct: 239 PKRSIIF-----------SNTKVFTNKIAEMLTNNGIPCCIINGDKSRYERGQAMRLFRD 287

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++++AT V   GID+ +   +I  +      + +H++ GR  R       I +    
Sbjct: 288 GKVRVMVATDVAARGIDIDNIDYVINYDIPTERESYIHRI-GRTARAGATGVAISIVSNR 346

Query: 600 LSKNSYTRLSVL-KNTEDGFLIAEEDLKQR 628
                   L    K   +   I   DLKQ+
Sbjct: 347 NDLREIQHLGAYQKKKIELLDITTYDLKQK 376


>gi|114048006|ref|YP_738556.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889448|gb|ABI43499.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 449

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 80/391 (20%), Positives = 140/391 (35%), Gaps = 48/391 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ ++ Q +      +PT  QE A+   L           +     GSGKTL  L+  
Sbjct: 6   FSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKD------LMASSKTGSGKTLAFLLPA 59

Query: 315 AAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              V       +   + +I+ P   LA Q Y  ++    NTQ     + G      + KA
Sbjct: 60  LQRVISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKAT 419
           L +    + H I+ T     D ++   L        +L   D     G   +LK    A 
Sbjct: 120 LAK----EPHFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAA 175

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG--RKPIKTVIIPINRIDEVIERLKV 477
                        +TL+ ++   +D S+I E  A   + P    I   +   + I +   
Sbjct: 176 DHKR--------RQTLMFSAT--LDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIY 225

Query: 478 VLSEGKKAYWICPQIEEKKESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           +         +   +   +           R+  ER  S       + A + G +    +
Sbjct: 226 LCDHLDHKEALLTHLLSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAAR 285

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             +MD F  G  ++L+ T V   G+D+++ S++I  +   F    +H++ GR GR     
Sbjct: 286 NQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKG 344

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
             I L  P    N       L+ T   F I+
Sbjct: 345 DAISLVGPKDWDNFKKVQLFLRKT---FEIS 372


>gi|326492798|dbj|BAJ90255.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 631

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 77/216 (35%), Positives = 125/216 (57%), Gaps = 3/216 (1%)

Query: 280 AIKDILQDM-SQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHY 338
           A  DI  D+  ++  M R++ GDVG GKT VA+ A+   V  G QA+++AP  ILA QH+
Sbjct: 414 AFIDIENDLTERETPMDRLICGDVGFGKTEVAMRAIFIVVSTGYQAMVLAPTVILANQHF 473

Query: 339 EFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
           + + +   N   I V I +G   +  + + + +I +G   II+GTHAL  + + Y  L L
Sbjct: 474 DVMSERFSNYPDIKVAIFSGAQSKDEKDELITKITNGHLQIIVGTHALLTERMAYNNLGL 533

Query: 398 VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP 457
           ++VDE+ +FGVQQ+ K+     +  VL ++ATPIPRTL L   G  D S ++  P  R  
Sbjct: 534 LVVDEEQKFGVQQKEKIASLKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVA 593

Query: 458 IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +KT +   +R +  +  +K+ L  G + +++ P+I+
Sbjct: 594 VKTYVSAFSR-ESALSAIKLELKRGGQVFYVVPRIK 628



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/359 (12%), Positives = 106/359 (29%), Gaps = 41/359 (11%)

Query: 196 KKSFPSIAEAFNIIHNPRKAKDF-EWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP 254
           + + P      +    PR      + ++  + RL     +   +  L+     +     P
Sbjct: 201 RYNLP------HEKKRPRNLSKLNDPSAWEKRRLKGKLAVQKMVVNLMELYLQRMRQRRP 254

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
              + +   +     P+ PT  Q      +L   +     + +L                
Sbjct: 255 PYRKPEAMDQFASEFPYEPTPDQNQ-FPILLDRGAVTGLDVGLLP------------RPT 301

Query: 315 AAAVEAGGQAVIMAPIGILAQQHYEFIK--KYTQNTQIIVEIITGNMPQAHRRKALERIA 372
            +A+           + I      E     +        V    G       ++A   + 
Sbjct: 302 RSALYKQANVYPSCYLNIWFCTVPEHCAVIQVFSIPPFGVHCEKG-------QQASRTLP 354

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
             +  I+    A+              +    R   + R  L Q+    H      +   
Sbjct: 355 LVKVMILYERGAIRFLGGHLRDC-WQQLLPGRRLLPRSREPLHQRHGRRHQHRWFCS--- 410

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
                 +      + +TE+      +    +   + +  +  + +V+S G +A  + P +
Sbjct: 411 ----CCTAFIDIENDLTERETPMDRLICGDVGFGKTEVAMRAIFIVVSTGYQAMVLAPTV 466

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                 +F  + ERF     +    +AI  G  S  +K+ ++    NG  ++++ T  +
Sbjct: 467 I-LANQHFDVMSERF---SNYPDIKVAIFSGAQSKDEKDELITKITNGHLQIIVGTHAL 521


>gi|220926974|ref|YP_002502276.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219951581|gb|ACL61973.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 506

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 129/344 (37%), Gaps = 29/344 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------G 321
           +PT  Q  A+   +                 G+GKT    + +   + +          G
Sbjct: 24  TPTPIQAQAVPPAMTGRD------LCGIAQTGTGKTAAFALPILHRLASETPAKRAPRRG 77

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            + ++++P   LA Q  +  + Y +       ++ G +    + +AL         +++ 
Sbjct: 78  CRVLVLSPTRELASQIADSFRDYGKFLPFSTTVVFGGVTIGRQERALAN----GIDVLVA 133

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +    L L  V+        Q L L        ++ +      ++L  ++  
Sbjct: 134 TPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVTLL-PKARQSLFFSATM 192

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
             +I+ +  +   R P++  + P+    E +E+  + +S G K   +   + ++      
Sbjct: 193 PKNIATLAAQYL-RDPVQVAVTPVATTAERVEQRVIHVSTGAKQALLGTILRDESIDRVL 251

Query: 497 -ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  +   +R     E      A IHG  S   +E  + +F+ GTC++L+AT +   GI
Sbjct: 252 VFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTCRVLVATDIAARGI 311

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV   + ++  +  +   A +H++ GR  R       I   +  
Sbjct: 312 DVEGVTHVVNFDLPNVPEAYVHRI-GRTARAGADGLAISFCNEE 354


>gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
 gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
          Length = 486

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 125/368 (33%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAKAIPVVLSGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATP 430
            T     D +Q           L+L   D     G    L+            LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    A    +  ++  +   D+    +K++     K   +
Sbjct: 203 SPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      A IHG  S  ++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 373

Query: 609 SVLKNTED 616
            ++K T  
Sbjct: 374 KLIKRTLS 381


>gi|297521217|ref|ZP_06939603.1| ATP-dependent RNA helicase DeaD [Escherichia coli OP50]
          Length = 569

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 TAE---GEELDLETLAAALLKMA 432


>gi|6468270|emb|CAB61567.1| ATP-dependent RNA helicase [Candida albicans]
          Length = 399

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 83/395 (21%), Positives = 137/395 (34%), Gaps = 42/395 (10%)

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           E        + + + F+     P  ++G  A          P+  Q  AI  I+      
Sbjct: 13  EFSHKSTKGIKVHRTFESMNLKPDLLKGIYAYGFEA-----PSAIQSRAIMQIISGRDT- 66

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNT 348
                I Q   G+GKT    I M   ++      QA+I++P   LA Q    +       
Sbjct: 67  -----IAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVMHLGDYM 121

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIV 400
            I      G        K L++       I+ GT     D I+   L        IL   
Sbjct: 122 NIHTHACIGGKNVGEDVKKLQQGQ----QIVSGTPGRVIDVIKRRNLQTRNIKVLILDEA 177

Query: 401 DEQHRFGVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEK--PAGRK 456
           DE    G ++++    K    +  V++++AT     L +TS    D  KI  K       
Sbjct: 178 DELFTKGFKEQIYEIYKHLPPSVQVVVVSATLPREVLEMTSKFTTDPVKILVKRDEISLS 237

Query: 457 PIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            IK   +   R D   + L  +       +A   C           +  V       +  
Sbjct: 238 GIKQYYVQCEREDWKFDTLCDLYDNLTITQAVIFCNT---------KLKVNWLADQMKKQ 288

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             ++  +HG M   +++S+M+ F+ G  ++LI+T V   GIDV   S++I  +       
Sbjct: 289 NFTVVAMHGDMKQDERDSIMNDFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKEN 348

Query: 575 QLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
            +H++ GR GR     + I L              
Sbjct: 349 YIHRI-GRSGRFGRKGTAINLITKDDVVTLKELEK 382


>gi|23501930|ref|NP_698057.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|23347874|gb|AAN29972.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
          Length = 535

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 142/393 (36%), Gaps = 40/393 (10%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R   D   A  +  + + K+        + + G + + +       P   Q  AI   L
Sbjct: 64  RRFKADRECAVPLKEIELTKENTGG-FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQL 122

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
           +          +     GSGKT    + +   +            +A+I+AP   LA Q 
Sbjct: 123 EGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQI 176

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+  +++  I   ++ G + +  + K +         ++I T     D +       
Sbjct: 177 EQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATPGRLTDLMCDGLVDL 232

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISK 447
            Q   L+L   D     G    +K   KAT       L +AT       L      D  +
Sbjct: 233 SQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVR 292

Query: 448 ITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P G     I  V+ P+   ++      ++     ++  +  + +   ++  R    
Sbjct: 293 VEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGADAVVRH--- 349

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 E     +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV   S ++ 
Sbjct: 350 -----LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +        +H++ GR GR     + I LY P
Sbjct: 405 YDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|150017770|ref|YP_001310024.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904235|gb|ABR35068.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 524

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 126/343 (36%), Gaps = 37/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            P+K Q   I  +L+          I Q   G+GKTL     + + +   E    ++I+ 
Sbjct: 26  EPSKIQAEVIPVLLEGHDV------IGQAQTGTGKTLAFGAPVLSRIRSSEGKISSIILT 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + + +  + T+I +  + G  P   +  AL R       I++GT     D
Sbjct: 80  PTRELAIQVNDELNRIAKFTKIKLLPVYGGQPIDRQISALRR----GIDIVVGTPGRVLD 135

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L L  +        DE    G    ++   K +             +T++ ++ 
Sbjct: 136 LIRRKVLNLGSIKFLVLDEADEMLNMGFIDDIEEIIKNSNQD---------RQTMLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI---EEKKE 497
              +I ++ ++    +     I+        +++    +    +   +C  +   E    
Sbjct: 187 MPEEIKRLAKRYMKSETKHIAILKNAMTVATVDQYYYEIKNKDRFETLCRILDVDEPTSA 246

Query: 498 SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F       + L E           +HG M+   + + +  FK G+ + LIAT V   G
Sbjct: 247 IIFCKTKRNVDELVEGLQGRGYTAEGMHGDMNQNQRINTLRKFKEGSLEFLIATDVAARG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           IDV + + +I  +      + +H++ GR GR         L  
Sbjct: 307 IDVENVTHVINYDLPQDVESYVHRI-GRTGRANRKGVAYTLVT 348


>gi|302915827|ref|XP_003051724.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732663|gb|EEU46011.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 714

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 134/386 (34%), Gaps = 53/386 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----------EA 320
            PT  Q +AI   LQ          I     GSGKT   L+ +   +             
Sbjct: 300 EPTPIQRAAIPIALQ------ARDLIGVAVTGSGKTAAFLLPLLVYISDLPPLEDHNKND 353

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+I+AP   L QQ     KK+ +        I G      +  AL       A II+
Sbjct: 354 GPYALILAPTRELVQQIETEAKKFAEPLGFRCVSIVGGHSLEEQAYALRN----GAEIIV 409

Query: 381 GTHALFQDSIQYYKLIL--------VIVDEQHRFGVQQRLKLT----------------Q 416
            T     D I+   L+L           D     G ++ +                   +
Sbjct: 410 ATPGRLVDCIERRLLVLGQCCYVIMDEADRMIDLGFEESVNKILDALPVSNEKPDTDDAE 469

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
            A      L       +T++ T+     + KI +K   R  + T+      +D V +R++
Sbjct: 470 NAQLMKRYLGGNDRYRQTMMYTATMPPVVEKIAKKYLRRPAVVTIGNAGEAVDTVEQRVE 529

Query: 477 VVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            V  E ++   +   +  +          N +   +      +    S   +HG  +   
Sbjct: 530 FVSGEDRRKKRLQEILSSEAFAPPIIVFVNIKRNCDAVARDIKAMGWSAVTLHGSKTQEQ 589

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E+ + S + G  ++L+AT +   GIDV D S+++  N      +  H++ GR GR  + 
Sbjct: 590 REAALASVRAGHTQVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRI-GRTGRAGKS 648

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTE 615
              I       + N Y    +L  + 
Sbjct: 649 GVAITFLGNEDADNMYDLKQILSKSS 674


>gi|254714133|ref|ZP_05175944.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|254716809|ref|ZP_05178620.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
          Length = 535

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 74/393 (18%), Positives = 140/393 (35%), Gaps = 40/393 (10%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R   D   A  +  + + K+        + + G + + +       P   Q  AI   L
Sbjct: 64  RRFKADRECAVPLKEIELTKENTGG-FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQL 122

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
           +          +     GSGKT    + +   +            +A+I+AP   LA Q 
Sbjct: 123 EGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQI 176

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+  +++  I   ++ G + +  + K +         ++I T     D +       
Sbjct: 177 EQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATPGRLTDLMRDGLVDL 232

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISK 447
            Q   L+L   D     G    +K   KAT       L +AT       L      D  +
Sbjct: 233 SQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVR 292

Query: 448 ITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P G     I  V+ P+   ++      ++     ++  +  +         +   +
Sbjct: 293 VEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRT--------KHGAD 344

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 E     +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV   S ++ 
Sbjct: 345 TVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +        +H++ GR GR     + I LY P
Sbjct: 405 YDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|156843946|ref|XP_001645038.1| hypothetical protein Kpol_1072p50 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380640|sp|A7TKR8|DED1_VANPO RecName: Full=ATP-dependent RNA helicase DED1
 gi|156115693|gb|EDO17180.1| hypothetical protein Kpol_1072p50 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 650

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/401 (16%), Positives = 134/401 (33%), Gaps = 46/401 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------------- 316
            PT  Q+ ++  + +          +     GSGKT   L  + +               
Sbjct: 182 KPTPVQKYSVPIVSRGRD------LMACAQTGSGKTGGFLFPVLSESFKNGPSPMPESAR 235

Query: 317 ---AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                +A   A+++AP   LA Q Y+  KK+T  + +   ++ G      + + L R   
Sbjct: 236 KSFVKKAYPTALVLAPTRELATQIYDEAKKFTYRSWVRPTVVYGGSDIGSQIRDLSR--- 292

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  ++ L  V     DE  R          Q         M  
Sbjct: 293 -GCDLLVATPGRLSDLLERGRVSLANVKYLVLDEADRMLDMGFEP--QIRQIVDGCDMPP 349

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++    DI  +  +      I   +  +    E I +  + + +  K   +
Sbjct: 350 VGERQTLMFSATFPDDIQHLA-RDFLSDYIFLSVGKVGSTSENITQRILYVEDMDKKSTL 408

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +    +         + + +               IHG  +  ++E  + +FKNG  
Sbjct: 409 LDLLSASNDGLTLIFVETKRMADELTDFLIMQDFRATAIHGDRTQSERERALAAFKNGNA 468

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+AT V   G+D+ + + ++  +        +H++ GR GR          ++     
Sbjct: 469 NLLVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRI-GRTGRAGNTGVATAFFNRGNRN 527

Query: 603 NSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPK 643
                  +L            D+  R+ G   G + SG   
Sbjct: 528 IVKGMYELLAEANQEIPPFLNDV-MRESGR--GGRTSGFSS 565


>gi|162462542|ref|NP_001104874.1| translation initiation factor [Zea mays]
 gi|2286151|gb|AAB64289.1| translation initiation factor [Zea mays]
          Length = 414

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 126/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 63  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 116

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 117 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILGS----GVHVVVGTPGRVFD 172

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 173 MLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEIT 232

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ D  ++ L          Y      +   
Sbjct: 233 RKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTL-------CDLYETLAITQSVI 285

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 286 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 345

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 346 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRD 387


>gi|312217179|emb|CBX97128.1| similar to pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Leptosphaeria maculans]
          Length = 815

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 81/409 (19%), Positives = 144/409 (35%), Gaps = 58/409 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
            P+  Q +AI   LQ          I     GSGKT   ++ +   +             
Sbjct: 416 EPSAIQRAAIPIALQCRD------LIGVAVTGSGKTAAFILPLLVYISQLPPLSAANRHD 469

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+++AP   LAQQ     +K+         +I G      +           A III
Sbjct: 470 GPYALVLAPTRELAQQIEVEARKFAAPLGFNTAVIVGGHSIEEQ----SFQMQAGAEIII 525

Query: 381 GTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLTQKATAPHVLL------- 425
            T     D I+   L+L           D     G ++ +     A   +          
Sbjct: 526 ATPGRLVDCIERRVLVLSQCTYVIMDEADRMIDMGFEEPVNKILDALPVNNEKPDSELAE 585

Query: 426 ----MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT---VIIPINRIDEVIERLKVV 478
               M      +T++ T+     + +I  K   R  I T   V   +  +++ +E ++  
Sbjct: 586 DANAMKRGFYRQTMMYTATMPTAVERIARKYLRRPAIVTIGNVGEAVETVEQRVEHIQGE 645

Query: 479 LSEGKKAYWICPQIEEKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
               K+   I    E +       N +   +      +H   S   +HG  +   +E+ +
Sbjct: 646 ERRKKRLQEILSSEEFRPPIIVFVNIKRNCDAIARDIKHMGFSAVTLHGSKTQEQREAAL 705

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            S K G   +L+AT +   GID+ D S+++  N      +  H++ GR GR  +    I 
Sbjct: 706 ASLKEGRTDVLVATDLAGRGIDITDVSLVVNFNMATSIESYTHRI-GRTGRAGKSGVAIT 764

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ--------RKEGEILG 635
            +    +   Y    +L  ++       EDL++        +K GE++G
Sbjct: 765 FWGNEDADVLYDLKQMLMKSQ--ISKVPEDLRKHEAAQQKGKKRGEVMG 811


>gi|154249323|ref|YP_001410148.1| DEAD/DEAH box helicase domain-containing protein [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153259|gb|ABS60491.1| DEAD/DEAH box helicase domain protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 571

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 122/346 (35%), Gaps = 38/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIM 327
            PT+ Q+  +   L           I Q   G+GKT    I +   ++       +A+I+
Sbjct: 40  KPTEIQKIVLPYALS-----TDKDLIAQAQTGTGKTAAFGIPLLERIDFKANKFVKAIIV 94

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LA Q +E +K      ++ +  + G      + K LE+       I++GT     
Sbjct: 95  TPTRELALQIFEELKSLKGTKRVKITTLYGGQSLEKQFKDLEK----GVDIVVGTPGRII 150

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D +    L L  V        D     G    +    K T  +          RT + ++
Sbjct: 151 DHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGEN---------KRTFLFSA 201

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               +I  I  K   ++ I    +      E  E+L   + E  K   +C  I+   +  
Sbjct: 202 TMPKEIVDIARKFM-KEYIHVSTVKDELTTENAEQLYFEVDEKDKLPLLCRIIDMNPDFY 260

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V+  +        +   +HG  S   +E V+D F+    ++L+ T V   
Sbjct: 261 GIVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVTTDVAAR 320

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GID+   + +I  +        +H++ GR GR  +    I      
Sbjct: 321 GIDIDGLTHVINYSVPRDPEYYVHRI-GRTGRAGKKGFAITFVTRD 365


>gi|113971754|ref|YP_735547.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113886438|gb|ABI40490.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 622

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 73/367 (19%), Positives = 136/367 (37%), Gaps = 38/367 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--G 322
           L  + +  PT  Q ++I  ++           + Q   G+GKT    + +   V +    
Sbjct: 21  LDELGYEKPTPIQSASIDPLMAGKD------ILGQAQTGTGKTGAFALPLLNKVTSQAVP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +++AP   LA Q  E    Y +      V  I G      +  AL+R       +I+G
Sbjct: 75  QILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALKR----GPQVIVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLL--MTATPI 431
           T     D ++   L        +L   DE  + G    ++   + T     L   +AT  
Sbjct: 131 TPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQLALFSATMP 190

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            +   +    L D     I         I+   + +++ +++   ++V+  E  +   I 
Sbjct: 191 EQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGIIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +            VE    L     +S + +HG M+   +E  ++  K+G   +LIAT 
Sbjct: 251 VRTRNS-------CVELAEKLEARGYAS-SPLHGDMNQQARERAVEQLKSGKLDILIATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV     ++  +  +   A +H++ GR GR       IL      S+      +
Sbjct: 303 VAARGLDVERIGHVVNYDIPYDTEAYVHRI-GRTGRAGRTGMAILFVT---SREMRMLRT 358

Query: 610 VLKNTED 616
           + + T  
Sbjct: 359 IERATNS 365


>gi|315223209|ref|ZP_07865070.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
 gi|315187641|gb|EFU21395.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
          Length = 539

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 129/362 (35%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          +       QA+++AP 
Sbjct: 46  SPIQEQTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKINTENPVVQALVIAPT 99

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL       AHI++GT     D I
Sbjct: 100 RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALRS----GAHIVVGTPGRLLDLI 155

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  V     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 156 KRKALKLNHVETLILDEADEMLNMGFLEDIEA-------IISRVPEERQTLLFSATMPDA 208

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            K       ++P    I       E++++  + + E +K   +   ++ ++         
Sbjct: 209 IKRIGVKFMKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGR 268

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 269 TKRRVDELTRGLKIRGFRTEGIHGDLDQGKRLRVLRDFKNGNLDILVATDVAARGLDISG 328

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          S+ K    G  
Sbjct: 329 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQVIESLTKKRMKGMK 387

Query: 620 IA 621
            A
Sbjct: 388 PA 389


>gi|258624294|ref|ZP_05719243.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM603]
 gi|258583445|gb|EEW08245.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM603]
          Length = 434

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 131/337 (38%), Gaps = 30/337 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     Q +++ P
Sbjct: 44  QPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQTLVLVP 97

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +        +    + G + +A ++ AL        +I++ T     D 
Sbjct: 98  TRELAMQVSEVLTHVGTPLGLNTLCLCGGVDKAEQQNALAE----NPNILVATTGRLFDL 153

Query: 390 IQ----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            Q      ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 154 TQSGLSLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTASVRQTVMCSATFSDD 206

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +     P +    P N I++ ++    ++++G K   +   +++ + S     + 
Sbjct: 207 LKLKAQQLMHAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWSQVLVFIG 266

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S   +E+ +  FKNGT ++LIAT ++  GI +  
Sbjct: 267 AKENADSLTKKLNKAGVVATALHGDKSQAQRETALAEFKNGTTQVLIATDLLARGIHIEQ 326

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             ++I         A +H++ GR  R  +    + L 
Sbjct: 327 LPVVINFELPMHAEAYVHRV-GRTARAGQQGIALSLV 362


>gi|170693410|ref|ZP_02884569.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170141565|gb|EDT09734.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 510

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 122/348 (35%), Gaps = 42/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q  AI  +L           +     G+GKT    + +   + +        G +
Sbjct: 23  TPTPIQTQAIPAVLNG------GDLLAGAQTGTGKTAGFTLPILQRLNSMPANTSASGKR 76

Query: 324 A---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           A   +I+ P   LA Q  E ++ Y +  ++   ++ G +    +  AL         I++
Sbjct: 77  AVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRS----GVDIVV 132

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT- 429
            T     D +Q           L+L   D     G    +K  L +       LL +AT 
Sbjct: 133 ATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATF 192

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL    L    + ++  +    + +   I P++R  +      ++         +
Sbjct: 193 SDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNWFQVLV 252

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +         +    R          S   IHG  S   +   +  FK+GT ++L+AT
Sbjct: 253 FTRT--------KHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVAT 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            +   GID+     ++  +  +     +H++ GR GR       + L 
Sbjct: 305 DIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLV 351


>gi|15215678|gb|AAK91384.1| AT3g19760/MMB12_21 [Arabidopsis thaliana]
 gi|25090064|gb|AAN72219.1| At3g19760/MMB12_21 [Arabidopsis thaliana]
          Length = 408

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 137/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ A+  ILQ          I Q   G+GKT +  +++   V+      QA+I++
Sbjct: 57  KPSAIQQRAVMPILQGRDV------IAQAQSGTGKTSMIALSVCQVVDTSSREVQALILS 110

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I+    +  I      G        + LE       H++ GT     D
Sbjct: 111 PTRGLATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEH----GVHVVSGTPGRVCD 166

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        IL   DE    G + ++            V L++AT     L +T
Sbjct: 167 MIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMT 226

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    +  KI  K      + IK   + + + +   + L  +       +A   C     
Sbjct: 227 SKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT--- 283

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+  +        +++ +HG M   +++++M+ F++G  ++LI T V   G
Sbjct: 284 ------KRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARG 337

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV   S++I  +  +     +H++ GR GR       I        K            
Sbjct: 338 IDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ 396

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 397 IDEMPMNVADL 407


>gi|16764999|ref|NP_460614.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992838|ref|ZP_02573934.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197262502|ref|ZP_03162576.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|16420182|gb|AAL20573.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197240757|gb|EDY23377.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205329063|gb|EDZ15827.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246847|emb|CBG24663.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993587|gb|ACY88472.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158183|emb|CBW17681.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912646|dbj|BAJ36620.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224281|gb|EFX49344.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129924|gb|ADX17354.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988542|gb|AEF07525.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 457

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 137/358 (38%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVTLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKETVSLDAL-HILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   ++PI+  I  ++ +   IE+     S  +K   +   + + +    
Sbjct: 187 WPEAIAAISGR-VQQQPIRIEIDTVDALP-AIEQQFFETSAHEKISLLQTLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNYELAWDPEVHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQ 361


>gi|325003093|ref|ZP_08124205.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
          Length = 471

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 144/424 (33%), Gaps = 47/424 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           L  + +  P+  Q +AI  ++           + Q   G+GKT    + M   +  G   
Sbjct: 49  LDGLGYETPSPIQAAAIGPLIAGRD------LLGQAATGTGKTAAFALPMLQRLADGRVS 102

Query: 324 --------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                    +++AP   LA Q  E + KY       V  + G  P   +   L R     
Sbjct: 103 RDRGPKPFGIVLAPTRELAMQVGEAVTKYGAELGARVACVFGGAPIGPQLGQLRR----G 158

Query: 376 AHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLL 425
             +++ T     D I    L L  +        DE    G  + +   L         +L
Sbjct: 159 VDVVVATPGRAIDLINRGALSLDAIEVAVLDEADEMLDMGFVEDIETILGSTPEGRQTVL 218

Query: 426 MTATPIPRTLVLTSLGDIDISKI-----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            +AT   R   L      D + I              ++     + R    +   +V+  
Sbjct: 219 FSATMPGRIQSLARTHLSDPADIRIKREATPEGEAPKVRQTAYHVPRSHVTVALGRVLEM 278

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           E   A  +  +         R+ V+               +HG M    +  V++  + G
Sbjct: 279 EQPTAAIVFCRT--------RADVDAVTETLTARGLRAEALHGGMDQEHRTRVVERLRAG 330

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             +LL+AT V   G+D+   + ++  +      + +H++ GRVGR       I L  P  
Sbjct: 331 RTELLVATDVAARGLDIDSLTHVVNHDVPSSPESYVHRI-GRVGRAGREGVAITLVTPGS 389

Query: 601 SKNSYTRLSVLKNT-EDGFLIAEEDLKQ-RKEGEILGIK-QSGMPKFLIAQPELHDSLLE 657
            ++      ++  +     + +  DL+  R     L ++ Q G          + + +L+
Sbjct: 390 VRHLRNIERLIGGSVPSAPVPSPADLRTVRLARTALALREQIGTDGDAQPSDGVDELVLD 449

Query: 658 IARK 661
           +AR 
Sbjct: 450 LARD 453


>gi|324995328|gb|EGC27240.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678]
          Length = 523

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 131/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          ++      QA+I+AP 
Sbjct: 25  SPIQEQTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLNQIETLILDEADEMLNMGFLEDIES-------IISRVPEERQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            K       ++P    I       E++++  + + E +K   +   ++ ++         
Sbjct: 188 IKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGR 247

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|260582883|ref|ZP_05850668.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
 gi|260094096|gb|EEW77999.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
          Length = 613

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 132/364 (36%), Gaps = 36/364 (9%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+S I  +L           +     GSGKT    + + A +   E   
Sbjct: 21  SDLGFETPSPIQQSCIPHLLSG------NDVLGMAQTGSGKTAAFALPLLAQIDPSEKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  + + +      +  + G      R     R     A +++G
Sbjct: 75  QMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGG----QRYDIQLRALKQGAQVVVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 131 TPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMP 190

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I      ++ + +    L+ +  E   A  I 
Sbjct: 191 EPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +NG+  +++AT 
Sbjct: 251 ARTKTGTLD--------ITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S+++  +      + +H++ GR GR       +L   P   +       
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEH 361

Query: 610 VLKN 613
           ++K 
Sbjct: 362 LMKK 365


>gi|326202741|ref|ZP_08192609.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325987325|gb|EGD48153.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 414

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 139/380 (36%), Gaps = 38/380 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N+   I + ++     +PT  Q+  I  +L+          +     G+GKT    I +
Sbjct: 6   LNLISPIQKALMAEGYTAPTDIQKQTIPLLLEGKD------LVGCAQTGTGKTAAFAIPI 59

Query: 315 AAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
              +    +         A+I+ P   LA Q  E    Y Q   +   +I G + Q  + 
Sbjct: 60  LQMLSVEQRDSKELRRIKALILTPTRELAVQIGESFTVYGQYLGLKNSVIFGGVSQKPQT 119

Query: 366 KALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
            ALE        I+I T     D      I  + +   ++DE  R      +        
Sbjct: 120 DALEE----GVDILIATPGRLLDLINQKYINLHHIKFFVLDEADRMLDMGLV------AD 169

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              ++     I +T++ ++    D+SK+ +      P+K  + PI+   ++IE+    + 
Sbjct: 170 VKRIISHLPKIRQTMLFSATMPPDVSKLIDS-ILTDPVKVAVTPISSTVDIIEQAVYFVG 228

Query: 481 EGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           +  K   +   ++ K  +        +   ++              IHG  S   ++  +
Sbjct: 229 KKDKKLLLTQLLKNKSITSALVFSRTKHGADKIVKELAKVRIHAEAIHGNKSQGARQRAL 288

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           ++FK+   ++L+AT +   GIDV   S +I  +  +     +H++ GR GR       + 
Sbjct: 289 NNFKDKKTRVLVATDIAARGIDVEGLSYVINYDLPNIPETYVHRI-GRTGRAGLGGVALS 347

Query: 595 LYHPPLSKNSYTRLSVLKNT 614
                          ++  +
Sbjct: 348 FCDADEKPYLKDIEKLISKS 367


>gi|255530578|ref|YP_003090950.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255343562|gb|ACU02888.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 625

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 70/362 (19%), Positives = 131/362 (36%), Gaps = 35/362 (9%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
           +++ F  PT  QE +I  +L+     N  + + Q   G+GKT    + +   ++      
Sbjct: 19  KDLGFENPTPIQEQSIPVLLEG---NNDFVGLAQ--TGTGKTAAFGLPLLELIDFKSNKP 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+I+ P   L  Q    IK +++NT    V  + G      + + +         I++ 
Sbjct: 74  QALILCPTRELCLQITSDIKNFSKNTSGANVVAVYGGANIMQQLREIRN----GVQIVVA 129

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPI 431
           T     D I            ++L   DE    G Q+ +      T       L +AT  
Sbjct: 130 TPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQEDINDILSTTPDDKKTWLFSATMP 189

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P  R +    +       +  K  G   I+     +   D+    LK ++    + + + 
Sbjct: 190 PEVRRIAKNYMDSPVELTMGTKNTGNVNIEHEYYIVRARDK-YAALKRIVDFNPEIFAVV 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                          +    L +    +   +HG +S   ++ VM  F++   +LLIAT 
Sbjct: 249 ------FCKTKLDTQDVAEHLIKDGY-NADALHGDLSQQQRDKVMQRFRDRNMQLLIATD 301

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GIDV + + +I  +      +  H+  GR GR  +    I + +            
Sbjct: 302 VAARGIDVNNVTHVINYSLPDEIESYTHR-SGRTGRAGKTGISICIVNSKEIGKIRQIER 360

Query: 610 VL 611
           ++
Sbjct: 361 II 362


>gi|197337401|ref|YP_002157747.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Vibrio fischeri MJ11]
 gi|197314653|gb|ACH64102.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Vibrio fischeri MJ11]
          Length = 462

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 90/458 (19%), Positives = 174/458 (37%), Gaps = 59/458 (12%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + +   T  Q  ++  +L+          I QG  GSGKT    + + A +      
Sbjct: 19  LETLGYNEMTPIQAQSLPFMLKGKDV------IAQGKTGSGKTAAFGLGLLANLNVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + I+K  +    I V  + G +P   +  +LE      AHII+
Sbjct: 73  VQSLVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLEH----GAHIIV 128

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQ--RLKLTQKATAPHVLLMTATP 430
           GT    ++ ++   L L  +        D     G Q      L         LL +AT 
Sbjct: 129 GTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDAVLDHAPVKRQNLLFSATF 188

Query: 431 IPRTLVLTSLGDID-ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P+   +      D I    E+      I      +   ++ +E L+++L + +      
Sbjct: 189 PPQIKSIADRIMNDPIMTKAEETVENTSINQHFFKVGDFEDRLEALQILLLKHQ------ 242

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           P+      +  R   E  + L  H+  S+  +HG +   D++  +  F N +  +L+AT 
Sbjct: 243 PESTVIFCNTKRVTQEVADELR-HYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATD 301

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     ++           +H++ GR GR       + L++     N      
Sbjct: 302 VAARGLDIESLDAVVNFELSRDPEVHVHRI-GRTGRAGNKGIALSLFNEKEMHNIAQIEE 360

Query: 610 VLK-NTEDGFLIAEEDLK-------------------QRKEGEILG--IKQSGMPKFLIA 647
            +  +  D  L + + LK                   + + G+ILG    + G+   ++ 
Sbjct: 361 YMNIDIRDEALPSADYLKEPAYYAEMVTLWIDGGKKNKLRPGDILGALTGKDGIEGKMVG 420

Query: 648 QPELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           +  + D  + + +    AK  L +  +   ++G+S R+
Sbjct: 421 KINVFDFHAYVAVHNTVAKAALKKL-ESGKMKGRSFRV 457


>gi|302786394|ref|XP_002974968.1| hypothetical protein SELMODRAFT_232454 [Selaginella moellendorffii]
 gi|300157127|gb|EFJ23753.1| hypothetical protein SELMODRAFT_232454 [Selaginella moellendorffii]
          Length = 408

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 133/369 (36%), Gaps = 45/369 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------G 321
            P+  Q  +   +L           I     GSGKTL   +     +            G
Sbjct: 9   KPSPIQAHSWPFLLDGRD------LIGIAATGSGKTLAFGVPALVHILNHKKKEKKHSKG 62

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            + ++++P   LAQQ    +++   +  + V  + G   +  +  +L         I++ 
Sbjct: 63  SRCLVLSPTRELAQQIAAVLEEAGASCGVKVVCLYGGSSKGPQYSSLRS----GCDIVVA 118

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGVQ--QRLKLTQKATAPHVLLMTATPI 431
           T    QD +            L+L   D     G +   R  ++        ++++AT  
Sbjct: 119 TPGRLQDFVDEGVCKLDQITYLVLDEADRMLDLGFEPAVRAIVSHIPQERQTIMLSATWP 178

Query: 432 P--RTLVLTSLGDIDISKIT----EKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGKK 484
              + L    + D    KIT    +  A     + V ++     D  ++ L  +  + K+
Sbjct: 179 TSVQKLAQEFIQDASPVKITVGSEDLSANHDVTQIVEVLDDKSRDRRLQELLRLYHKTKR 238

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              +   + +K+         R  +  +     +  IHG  S   +   + +FK+G+  L
Sbjct: 239 NRVLVFVLYKKEAV-------RVENFLQKQGWKVTGIHGDKSQQARNQALSAFKDGSHPL 291

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+D+ D   +I  +        +H++ GR GR  +  +    +       +
Sbjct: 292 LIATDVAARGLDIPDVEFVINYSFPLTTEDYVHRI-GRTGRAGKKGTAHTFFTTADKARA 350

Query: 605 YTRLSVLKN 613
              +++L+ 
Sbjct: 351 GELVNILRE 359


>gi|83310527|ref|YP_420791.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82945368|dbj|BAE50232.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 476

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 126/361 (34%), Gaps = 37/361 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  QE +I  +LQ          +     G+GKT    + +   ++           +
Sbjct: 25  TPTPIQEQSIPHLLQG------SDVLGLAQTGTGKTASFALPLLQRLDQFKKRAMPKSCR 78

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA Q  +  K Y  + ++   ++ G +    + K +     G   +++ T 
Sbjct: 79  ILVLTPTRELAVQVGQSFKTYGCHYRLRHALVFGGVGMVPQIKTMA----GGVDVLVATP 134

Query: 384 ALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D I+   + L  V     DE  R      ++  +K       ++   P  R  VL 
Sbjct: 135 GRLLDLIEQGAIRLDSVEALVLDEADRMLDMGFIQPIRK-------IVALVPKQRQTVLF 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           S    D            P++  + P++   + I++  + +    K   +   +  K   
Sbjct: 188 SATMPDSIVGLANSVLHTPVRVEVTPVSSTVDKIDQKVLFVDREHKRTLLTDILAGKDVG 247

Query: 498 -----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  +    R   L E        IHG  S   ++  +  F++G  K L+AT +  
Sbjct: 248 RALVFTRTKHGANRVVELLEKAGIDADAIHGNKSQGARQKALADFRDGRIKALVATDIAA 307

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GIDV   + +I     +   + +H++ GR  R       + L               ++
Sbjct: 308 RGIDVDGITHVINFELPNEPESYVHRI-GRTARAGASGIALSLCDGDEVAYLRDIEKTIR 366

Query: 613 N 613
            
Sbjct: 367 Q 367


>gi|242024557|ref|XP_002432694.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212518164|gb|EEB19956.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 407

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 134/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+ +IK I++          I Q   G+GKT    I++  +++      Q + ++
Sbjct: 56  KPSAIQQRSIKPIVKGRDV------IAQAQSGTGKTATFSISIIQSLDTTVRETQVLCLS 109

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        +      G        + L+       H+I GT     D
Sbjct: 110 PTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQ----HVISGTPGRVFD 165

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+           L+L   DE    G ++++         A  V+L++AT     L +T
Sbjct: 166 MIRRRVLRTRFIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 225

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    D  +I  K      + IK   + + R +   + L  +       +A   C     
Sbjct: 226 SKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT--- 282

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+           +++ +HG M   +++++M  F+ G  ++LI T V   G
Sbjct: 283 ------KRKVDWLTEKMREANFTVSCMHGDMPQKERDAIMKEFRTGLSRVLITTDVWARG 336

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV   S++I  +  +     +H++ GR GR       I        +            
Sbjct: 337 IDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQ 395

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 396 IDEMPMNVADL 406


>gi|302831193|ref|XP_002947162.1| hypothetical protein VOLCADRAFT_103394 [Volvox carteri f.
           nagariensis]
 gi|300267569|gb|EFJ51752.1| hypothetical protein VOLCADRAFT_103394 [Volvox carteri f.
           nagariensis]
          Length = 481

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 138/391 (35%), Gaps = 45/391 (11%)

Query: 251 IGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
             +     G  +  +     F SP+  Q      IL           I     GSGKTL 
Sbjct: 63  PVLAFEHTGLPSDMLHATRNFVSPSPIQAQCWPIILAGRD------LIGIAATGSGKTLG 116

Query: 310 ALIAMAAAVEA----------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
             + M   + A          G  A++MAP   LA Q  + +++      +    + G +
Sbjct: 117 FGLPMLRHIAAQRDNGVVSGKGPFAIVMAPTRELALQINQVLEEAGSQCSVRTVCVYGGV 176

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRF-----GVQ 409
           P+  +  AL+        +++GT    +D +     Q  K+   ++DE  R         
Sbjct: 177 PKGPQVAALKS----GVEVVVGTPGRMEDLLNDGVLQLKKVTYAVLDEADRMLDLGFEPH 232

Query: 410 QRLKLTQKATAPHVLLMTATPI--PRTLVLTSLGDIDISKITEKPAGRKPIKT----VII 463
            R  +         L+ +AT     + L +  L       I  +        T    VI 
Sbjct: 233 IRAIMGLTRADRQTLMFSATWPAAVQKLAIAFLSHPVKVTIGSQDLAASHSITQRVDVID 292

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
           P  R   ++E L+       +   +   +  KKE+       R   L          IHG
Sbjct: 293 PNARDGRLLELLQQYHGAKGRKNRVIIFVLYKKEA------PRVEQLLSRKGWKAVAIHG 346

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +S   +   +D FK+G   LLIAT V   G+D+ D  ++I  +        +H++ GR 
Sbjct: 347 DISQQQRTDAVDKFKSGVVPLLIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRI-GRT 405

Query: 584 GRGEEI-SSCILLYHPPLSKNSYTRLSVLKN 613
           GR  +   +       P    +   ++VL+ 
Sbjct: 406 GRAGKTGIAHTFFCAGPDKPRAGELINVLRE 436


>gi|300703503|ref|YP_003745105.1| ATP-dependent RNA helicase, dead-box family [Ralstonia solanacearum
           CFBP2957]
 gi|299071166|emb|CBJ42480.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           CFBP2957]
          Length = 495

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 130/361 (36%), Gaps = 34/361 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q +AI  ++           +     G+GKT    + +   +              
Sbjct: 38  PTPIQAAAIPVVVGGRDV------MGAAQTGTGKTAGFSLPIIQNLLPEANTSASPARHP 91

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q Y+ + KY + T +   ++ G +    + + L R       I++ 
Sbjct: 92  VRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRR----GVEILVA 147

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +Q   + L  V          R+           ++       +TL+ ++  
Sbjct: 148 TPGRLLDHVQQRSVNLSQV-RMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSATF 206

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--- 498
             +I K+        P    +   N   + + ++   + +G K   +   + ++ E    
Sbjct: 207 SPEIKKLAASYLRH-PQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQRAEQGLP 265

Query: 499 -------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N +    R     E    +   IHG  + I++   +++FK GT  +L+AT V 
Sbjct: 266 SQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGTVDVLVATDVA 325

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     +I  +        +H++ GR GR       + L+ P   +       ++
Sbjct: 326 ARGLDISQMPCVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLFAPGDERLLADIEKLI 384

Query: 612 K 612
           K
Sbjct: 385 K 385


>gi|207723759|ref|YP_002254157.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|207743814|ref|YP_002260206.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|206588963|emb|CAQ35925.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|206595214|emb|CAQ62141.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 495

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 130/361 (36%), Gaps = 34/361 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q +AI  ++           +     G+GKT    + +   +              
Sbjct: 38  PTPIQAAAIPVVVGGRDV------MGAAQTGTGKTAGFSLPIIQNLLPEANTSASPARHP 91

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q Y+ + KY + T +   ++ G +    + + L R       I++ 
Sbjct: 92  VRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRR----GVEILVA 147

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +Q   + L  V          R+           ++       +TL+ ++  
Sbjct: 148 TPGRLLDHVQQRSVNLSQV-RMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSATF 206

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--- 498
             +I K+        P    +   N   + + ++   + +G K   +   + ++ E    
Sbjct: 207 SPEIKKLAASYLRH-PQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQRAEQGLP 265

Query: 499 -------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N +    R     E    +   IHG  + I++   +++FK GT  +L+AT V 
Sbjct: 266 SQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGTVDVLVATDVA 325

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     +I  +        +H++ GR GR       + L+ P   +       ++
Sbjct: 326 ARGLDISQMPCVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLFAPGDERLLADIEKLI 384

Query: 612 K 612
           K
Sbjct: 385 K 385


>gi|332361718|gb|EGJ39522.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056]
          Length = 523

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 131/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          ++      QA+I+AP 
Sbjct: 25  SPIQEQTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLNQIETLILDEADEMLNMGFLEDIES-------IISRVPEERQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            K       ++P    I       E++++  + + E +K   +   ++ ++         
Sbjct: 188 IKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGR 247

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|319893030|ref|YP_004149905.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162726|gb|ADV06269.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323463915|gb|ADX76068.1| DEAD-box ATP dependent RNA helicase, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 495

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 157/412 (38%), Gaps = 30/412 (7%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGG 322
           L  + F  PT  Q+ +I   L+++        + Q   G+GKT    I +   V  + G 
Sbjct: 17  LEAMGFTEPTPIQKDSIPFALENID------ILGQAQTGTGKTGAFGIPLIEKVVGKEGV 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q  E ++++++  ++ V  + G MP   + K+L+R       I++GT
Sbjct: 71  RALILAPTRELAMQVAEQLREFSRGQKVQVVTVFGGMPIDRQIKSLKR----GPQIVVGT 126

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D +    L    ++        + + +       +++    +   +T++ ++   
Sbjct: 127 PGRVIDHLNRRTLKPQQIETLILDEADEMMNMGFIDDMRYIMDKLPSENRQTMLFSATMP 186

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESN 499
             I ++ +K   + P     +     D  I+    ++ E +K       ++  +      
Sbjct: 187 KAIQELVQKFM-KSPRIIKTMNNEISDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIV 245

Query: 500 FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F     R + L     S       +HG ++   +  V+  FKN    +L+AT V   G+D
Sbjct: 246 FGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +   S +   +      +  H++ GR GR  +    +   +P         +  ++ T  
Sbjct: 306 ISGVSHVYNFDIPQDTESYTHRI-GRTGRAGKHGIAVTFVNP----IEMDYIRQIEQTN- 359

Query: 617 GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
                   L+     E+L  ++  +      Q  +  +        AK +L 
Sbjct: 360 --RRQMRALRPPHRKEVLKAREDEIKS--KVQSWMDAAKEPRVENIAKQLLE 407


>gi|326791684|ref|YP_004309505.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326542448|gb|ADZ84307.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 371

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 73/366 (19%), Positives = 130/366 (35%), Gaps = 39/366 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           PT  Q+  I  IL           I +   G+GKTL  L+ +   + +     QA++++P
Sbjct: 24  PTPIQDQTIPLILSGKDV------IGEAQTGTGKTLAFLLPLFEKLSSKSPNIQALVLSP 77

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  +  KK  +   I +  I G    A + K L +      H++I T     D 
Sbjct: 78  TRELAIQITQEAKKLAEAKAIGILPIYGGQDTAMQLKKLGKP----VHLVIATPGRLLDH 133

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP--IPRTLVL 437
           I    +        +L   D+    G +  +     Q       L  +AT     + L  
Sbjct: 134 IGRKSIDLSKTTTFVLDEADQMLLMGFKNDVESITKQLPKKRQTLCFSATMDAPVKKLAY 193

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                     I +K    + I   I+      +    L+V+  +      I  + + + E
Sbjct: 194 RYTSSPTTVTIAKKKITIEAIHQEIVETTDRHKQAALLQVLSEDNPYMAIIFCRTKRRVE 253

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
             + ++ ++          +   +H  +    +E +M SFK G  + LIAT V   G+D+
Sbjct: 254 VLYEAMKDK--------DYNCVRLHSDILQSKRERIMKSFKKGDIQYLIATDVAARGLDI 305

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              + I   +      A +H++ GR GR        +   P   K      + ++     
Sbjct: 306 SGVTHIYNYDVPETPEAYIHRI-GRTGRAGNDGYTCMFMSPKNEKEVSEIEAHIR----- 359

Query: 618 FLIAEE 623
           F I   
Sbjct: 360 FKIPRR 365


>gi|268680158|ref|YP_003304589.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618189|gb|ACZ12554.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 436

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 63/372 (16%), Positives = 128/372 (34%), Gaps = 29/372 (7%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  +  +R + ++ PT  Q   I  +L+          +     G+GKT    + +   
Sbjct: 9   SEPIRDAVRELGYTKPTPVQNKVIPLVLEGKDV------MATAQTGTGKTAAYALPLLHI 62

Query: 318 VEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           +    Q         A+I+ P   LA Q    ++ Y +N  +    I G +    + K L
Sbjct: 63  LNKKTQKSTTSKVVRALILVPTRELASQVGASVQAYGKNVPLSSAAIYGGVKFTPQAKKL 122

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
           ++       I+I T     + ++   + L  V E   F    R+           LL   
Sbjct: 123 DK----GIDILIATPGRLLEHVKLGNVDLSRV-EIVVFDEADRILDMGFWDEVQTLLGLF 177

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ +      + +++E  + +KP+   I       + +E+   ++ + +K   +
Sbjct: 178 PKKRQTLLFSVGLSKSVKRLSEV-SLKKPVTVAINNQGDFAKKVEQTLYLVDKERKCELL 236

Query: 489 CPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              I              +   +              ++HG  +   +   + +FK    
Sbjct: 237 SFMIGTHNWHQVLVFTKTKQSADEVGEYLNASGLKTLVLHGDKAHSKRTQAIHAFKENAI 296

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           ++L+AT +   G+D+ D   +I            H+  GR GR  +    I L       
Sbjct: 297 RVLVATDIASRGLDIEDLPYVINYELPGDAEDYTHR-AGRTGRAGKEGRAISLVAQEEKN 355

Query: 603 NSYTRLSVLKNT 614
                  +LK T
Sbjct: 356 KFKEIEKILKYT 367


>gi|59712397|ref|YP_205173.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59480498|gb|AAW86285.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 398

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 131/354 (37%), Gaps = 38/354 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           +  + +  PT  Q+ AI   L           I     G+GKT   ++ +   +      
Sbjct: 16  IDELGYKAPTPIQQKAIPVALTGK------NLIAAAQTGTGKTASFVLPILEILSEDPTK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+I+ P   LA Q  E I++Y+++  I    + G +    +++ L        
Sbjct: 70  VRAKRIRALILTPTRELAIQVEENIQQYSKHIDITSLAMYGGVDYKEQKQRLIE----GV 125

Query: 377 HIIIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +++ T     D      I + +L ++++DE  R      ++   K       ++   P+
Sbjct: 126 DVLVATPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDINK-------IIERLPL 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  +   K A   PI+  I P       I++    + + KK+  +   
Sbjct: 179 DRQNMLFSATLSDQVRYLAKTAINNPIEISISPKTTSSPQIDQWLTTVDKDKKSALLSHL 238

Query: 492 IEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           I+E   +        +    +  S  E         H   S   +  V++ FK G  + L
Sbjct: 239 IKENNWNQALIFIETKHGAAKLVSQLEKRDIRAEAFHSGRSQEARAKVLNDFKEGKLQYL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +AT +   GID+ + + ++  +        +H++ GR GR       I      
Sbjct: 299 VATGIAARGIDIDELTRVVNYDLPFPADDYVHRI-GRTGRAGAKGEAISFVSKD 351


>gi|88707113|ref|ZP_01104807.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71]
 gi|88698625|gb|EAQ95750.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71]
          Length = 423

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 66/390 (16%), Positives = 137/390 (35%), Gaps = 51/390 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----AGGQA-- 324
            PT  Q  A+  +L           +     G+GKT   ++ +   +       G Q   
Sbjct: 23  QPTPIQTKAVPLVLDGQDV------LAAAQTGTGKTAAFVLPILQRLAFVGGARGRQVRT 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q ++ +  Y +   +   ++ G +    + +ALE        +++ T  
Sbjct: 77  LVLTPTRELASQVHDSVLTYGRYLDLRSAVVFGGVRAEPQIEALEP----GVDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLT 438
              D      + +  L ++++DE  R      +            ++   PI  +TL+ +
Sbjct: 133 RLLDLAQQGYVDFSALEVLVLDEADRMLDMGFIHDM-------RRIIEMLPINRQTLMFS 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    +I  +  +    +P+   + P N   E++E+    +    K+  +     E +  
Sbjct: 186 ATFSQEIRSLAARYL-VEPVSVDVAPANSTTELVEQKAYAVDPEHKSDLLMHLFREGEWG 244

Query: 499 NFRSVVER---FNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                       N L +       + A IHG  S   ++  +D+FK G  +LLIAT +  
Sbjct: 245 QALVFCRTKHGANQLSKALLNAGFAAAPIHGNKSQNARQRALDAFKKGDLQLLIATDLAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+     ++  +        +H++ GR GR         L              +++
Sbjct: 305 RGLDIDQLPEVVNFDLPSVPQDYVHRI-GRTGRAGATGRSHSLVSADDEPLLRAIEVLIR 363

Query: 613 -----NTEDGFLIAEE--------DLKQRK 629
                    GF   +         D + R 
Sbjct: 364 REIPMEHVSGFEPTDRPPSSHNTGDREDRG 393


>gi|332366034|gb|EGJ43790.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059]
          Length = 523

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 131/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          ++      QA+I+AP 
Sbjct: 25  SPIQEQTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLNQIETLILDEADEMLNMGFLEDIES-------IISRVPEERQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            K       ++P    I       E++++  + + E +K   +   ++ ++         
Sbjct: 188 IKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGR 247

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|324990619|gb|EGC22555.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353]
 gi|325688268|gb|EGD30287.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72]
          Length = 523

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 131/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          ++      QA+I+AP 
Sbjct: 25  SPIQEQTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLNQIETLILDEADEMLNMGFLEDIES-------IISRVPEERQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            K       ++P    I       E++++  + + E +K   +   ++ ++         
Sbjct: 188 IKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGR 247

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|313241110|emb|CBY33407.1| unnamed protein product [Oikopleura dioica]
          Length = 847

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 144/375 (38%), Gaps = 42/375 (11%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---- 319
           +++ + F  PT  Q   +  I+           I     GSGKTL  ++ M   +E    
Sbjct: 362 LIKRMKFEKPTPIQAQCLPAIMSGRDV------IGIAKTGSGKTLGFVLPMLRHMEHQRE 415

Query: 320 ----AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  AVIM P   LA Q  +  +K+  + +     + G    + +   L+R     
Sbjct: 416 VEKGEGPIAVIMTPTRELAIQITKDTRKFANHMRWRTVCVYGGTGISEQISELKR----G 471

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A III T     D +           +    ++DE  R                  +L +
Sbjct: 472 AEIIICTPGRMIDMLAANNGRVTNLRRCTYCVLDEADRMFDMGFEPQVMH------ILNS 525

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  + ++ ++     +  +  +    KP++  +   + + + +++  VVL++  K   
Sbjct: 526 VRPDRQLVLFSATFPRSMEALARR-ILTKPLEITVGGKSVVCDDVQQNVVVLNDEDKFLK 584

Query: 488 ICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNG 540
           +   +   +E      F    E  ++L +    +      +HG M   D++SV++ FK G
Sbjct: 585 LLELLGRFQESGSVIVFTHKHEVADALLKEVLKAGYPAQALHGGMDQYDRDSVINDFKKG 644

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              LLIAT+V   G+DV +  +++  +  +     +H+  GR GR     +         
Sbjct: 645 VSNLLIATSVAARGLDVKNLILVVNFDCPNHYEDYVHR-CGRTGRAGNKGTAYTFLTEEE 703

Query: 601 SKNSYTRLSVLKNTE 615
            K +   +  L+ ++
Sbjct: 704 GKYAGDIIKALEMSK 718


>gi|212636923|ref|YP_002313448.1| DEAD box family ATP-dependent RNA helicase [Shewanella
           piezotolerans WP3]
 gi|212558407|gb|ACJ30861.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
           piezotolerans WP3]
          Length = 432

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 69/400 (17%), Positives = 136/400 (34%), Gaps = 48/400 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QAV 325
           T  Q+ AI  + +          +     G+GKT    + +   +            +A+
Sbjct: 25  TPIQQQAIPAVRRGQDV------LASAQTGTGKTAAFSLPILQKMLDNPSATQRSNARAL 78

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  + I  Y +  ++ V  I G +    +   L+R     A III T   
Sbjct: 79  ILTPTRELAAQIADNINDYAKYLEVNVVTIVGGVKMDSQATKLKR----GADIIIATPGR 134

Query: 386 FQDSIQYYKLILVIVD-----EQHRF-----GVQQRLKLTQKATAPHVLLMTAT--PIPR 433
             + I    L L  VD     E  R          +  L    +    L+ +AT     +
Sbjct: 135 LLEHIVACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNSKRQNLMFSATFSAPVK 194

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L    +   ++    ++      +  VI P+ +  +     +++  +  +   +     
Sbjct: 195 KLASEMMVKPNVITADKQNTTADTVSQVIYPVEQRRKRELLSELIGKKNWQQVLVFT--- 251

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R   ++            A++HG  +   +   +  FK G  ++L+AT V   
Sbjct: 252 -----ATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRVLVATEVAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+ D   ++  +        +H++ GR GR  +    I        +       ++  
Sbjct: 307 GLDIQDLEYVVNYDLPFLAEDYVHRI-GRTGRAGKSGVAISFVSREEERTLADIEKLIGQ 365

Query: 614 -----TEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ 648
                T  G+ +   DL  ++    L  ++S   K   A 
Sbjct: 366 KLRRVTVPGYEVGSRDLLIKQ----LQTRRSFAKKQQRAD 401


>gi|70994563|ref|XP_752059.1| ATP dependent RNA helicase (Dbp1) [Aspergillus fumigatus Af293]
 gi|74671260|sp|Q4WP13|DED1_ASPFU RecName: Full=ATP-dependent RNA helicase ded1
 gi|66849693|gb|EAL90021.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus fumigatus
           Af293]
          Length = 674

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 59/379 (15%), Positives = 135/379 (35%), Gaps = 54/379 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGG-------- 322
           +PT  Q+ +I  +   M+ ++ M        GSGKT   L  +   A + G         
Sbjct: 210 TPTPVQKYSIPIV---MNGRDLM---ACAQTGSGKTGGFLFPILSQAFQTGPSPVPAQAS 263

Query: 323 -------------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                         ++I+AP   L  Q ++  +K+   + +   ++ G      + + +E
Sbjct: 264 GQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIE 323

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP 421
           R       +++ T     D I+  +        L+L   D     G + +++   +    
Sbjct: 324 R----GCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGED- 378

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
               M      +TL+ ++    DI  +  +   +  +   +  +    E I +    + +
Sbjct: 379 ----MPNVNERQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEYVED 433

Query: 482 GKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             K   +   +               + + +  +    +       IHG  +  ++E  +
Sbjct: 434 HDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERAL 493

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F++G C +L+AT V   G+D+ + + +I  +        +H++ GR GR         
Sbjct: 494 EMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGIATA 552

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++          + +LK 
Sbjct: 553 FFNRSNRGVVRELIDLLKE 571


>gi|297826827|ref|XP_002881296.1| hypothetical protein ARALYDRAFT_902447 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327135|gb|EFH57555.1| hypothetical protein ARALYDRAFT_902447 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 731

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 140/397 (35%), Gaps = 47/397 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----------A 320
            P+  Q +AI   LQ      +   I   + GSGKT   ++ M A +             
Sbjct: 333 KPSPIQMAAIPLGLQ------QRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETE 386

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  AV+MAP   LAQQ  E   K+       V  I G      +   + +       I+I
Sbjct: 387 GPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCE----IVI 442

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVL-------- 424
            T     D ++           ++L   D     G + ++     A     L        
Sbjct: 443 ATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEE 502

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           L        T + ++     + ++  K   R P+   I    +  ++I +  +++ E +K
Sbjct: 503 LDEKKIYRTTYMFSATMPPGVERLARKYL-RNPVVVTIGTAGKTTDLISQHVIMMKESEK 561

Query: 485 AYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            + +   ++E  +       N +   +      +     +  +HG  S   +E  ++ F+
Sbjct: 562 FFRLQKLLDELGDKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFR 621

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                +L+AT V+  GID+ D + +I  +         H++ GR GR  +          
Sbjct: 622 AKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRI-GRTGRAGKSGVATSFLTL 680

Query: 599 PLSKNSYTRLSVLKNTEDGF--LIAEEDLKQRKEGEI 633
             ++  Y    +L  +       +A  +  + K G +
Sbjct: 681 HDTEVFYDLKQMLVQSNSAVPPELARHEASRFKPGTV 717


>gi|296161858|ref|ZP_06844659.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295887877|gb|EFG67694.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 467

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 160/444 (36%), Gaps = 59/444 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +++   L           I Q   GSGKT    +A+ A ++     
Sbjct: 24  LTQLGYVEMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDVRNFA 77

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    I V  + G  P   +  +LE      AHI++
Sbjct: 78  VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH----GAHIVV 133

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D ++   L L     +++DE  R                  ++       +TL
Sbjct: 134 GTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIA------TVVKQCPKERQTL 187

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I K++++       K V +     +  I +    ++E ++ + +   +   
Sbjct: 188 LFSATYPEGIVKLSQQFLRNP--KEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLNHY 245

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 246 RPVSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATD 305

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP----------- 598
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 306 VAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQEGWALSLASMSEMGRVGSLEQ 364

Query: 599 --PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLIA 647
                   +    +   + +  L   E L+           G++LG    ++G     I 
Sbjct: 365 AQKRDVEWHKLSELTATSNERLLPPMETLQILGGRKEKIRPGDVLGALTGEAGFAGSQIG 424

Query: 648 QPELHDS--LLEIARKDAKHILTQ 669
           +  + +    + + R  A+  + +
Sbjct: 425 KINVTEMSTYVAVERSVARDAVRK 448


>gi|237739222|ref|ZP_04569703.1| ATP-dependent RNA helicase [Fusobacterium sp. 2_1_31]
 gi|229422830|gb|EEO37877.1| ATP-dependent RNA helicase [Fusobacterium sp. 2_1_31]
          Length = 529

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 127/343 (37%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SPT  Q+  I  +L     KN    I Q   G+GKT    + +    E      QA+++ 
Sbjct: 30  SPTPIQKLTIPALL-----KNDKDIIGQAQTGTGKTAAFSLPIIENFETSDHHIQAIVLT 84

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E +   + + ++ V  + G      +RK ++        +++GT     D
Sbjct: 85  PTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKT----GVDVVVGTPGRVID 140

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLT 438
            I+   L L  +        DE    G  + ++     T     +L  +AT  P  + + 
Sbjct: 141 LIERKLLKLNSLKYFVLDEADEMLNMGFIEDIEKILTFTNDDKRMLFFSATMPPEIMKIA 200

Query: 439 SLGDIDISKITEKPAGRKPIKTVII--PINRIDEVIERLKVV-LSEGKKAYWICPQIEEK 495
                +   +  K        T  I   +N  D+     +++ L++       C    + 
Sbjct: 201 KTHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGIIFCRTKTDV 260

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E   R     +++           +HG +    +E  +  FK     +L+AT V   GI
Sbjct: 261 NEIVGRLNDRGYDA---------EGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGI 311

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           D+ D S +I         + +H++ GR GR  +  + I    P
Sbjct: 312 DINDLSHVINYAVPQEVESYVHRI-GRTGRAGKEGTAITFITP 353


>gi|189485761|ref|YP_001956702.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287720|dbj|BAG14241.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 543

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 75/352 (21%), Positives = 130/352 (36%), Gaps = 40/352 (11%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA---AVEAGG 322
            ++ F   T  Q  +I  ++  +        I Q   G+GKT    I +     A     
Sbjct: 20  EDLGFEEATPIQSLSIPKMMTGID------IIGQSQTGTGKTAAFGIPVLEKTNAKNKAV 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q+VI+ P   LA Q  E +K +++    I +  + G  P   +  AL +     A I+IG
Sbjct: 74  QSVILCPTRELAIQVAEELKLFSKYKKGINIVPVYGGQPIQRQMIALSK----GAQIVIG 129

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D ++   L        IL   DE    G +  ++L          L +     +
Sbjct: 130 TPGRVIDHLERRTLKLDTASIVILDEADEMLDMGFRDDIELI---------LKSIPEGRQ 180

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T+  ++    +   +T+K     P    ++        IE+    + E +K   +   ++
Sbjct: 181 TVFFSATMPKEFLSLTKKY-QHSPETIKVVSEKLTVPSIEQYYFDIKEHQKLEALTRCLD 239

Query: 494 EKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                      N +  V+   S  +        IHG M+   +  VM  F+NG+ +LLIA
Sbjct: 240 MYDPKLSLVFCNTKKRVDEVTSSLQARGYYADAIHGDMNQSQRNRVMSKFRNGSIELLIA 299

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           T V   GIDV    ++   +        +H++ GR GR  +           
Sbjct: 300 TDVAARGIDVDGIDMVFNFDVPKDDEDYVHRI-GRTGRAGKAGKAYSFVSGK 350


>gi|168185435|ref|ZP_02620070.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
 gi|169296498|gb|EDS78631.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
          Length = 476

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 150/399 (37%), Gaps = 42/399 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           ++ + +  PT+ QE  I  +LQ          I++   GSGKT    I +   V+     
Sbjct: 16  IKMLGYKNPTEVQEKTIPIVLQGKD------IIVKSQTGSGKTASFGIPLCEKVKLENKK 69

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E I    +  ++    + G  P + ++  L++    + HI++G
Sbjct: 70  PQALILTPTRELAVQIKEDISNIGRFKKVKCVAVYGKEPVSIQKNQLKQ----RVHIVVG 125

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPI 431
           T     D IQ   L L  V        D+    G   ++   + + +T    +L +AT  
Sbjct: 126 TPGRTFDHIQKGNLDLSDVKYLIIDEADKMLNMGFIDQVEDIIKRLSTDRITMLFSATLE 185

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTV---IIPINRIDEVIERLKVVLSEGKKAY 486
            R   L    + + +  +I  +      I+     +    R + + + +   + +   A 
Sbjct: 186 ERIEKLCKRYMNNPEKIEIKRENVTTDVIEQEYYKVDHSKRFNTLTKVIYAEVPDS--AI 243

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C    E      +   E FN+           +HG M   D+   ++ FK G  + L+
Sbjct: 244 IFCNTKVEVGNVANKMKNEGFNA---------KALHGGMDQKDRLYTINDFKRGKFQFLV 294

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   GIDV + + +I           +H++ GR GR       I        +    
Sbjct: 295 ATDVAARGIDVEEITHVINYEVPVEKEGYVHRI-GRTGRAGHKGKSITFVSDYEKRMFNE 353

Query: 607 RLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL 645
               +  +     I +E+ +  K  ++   K    PKF 
Sbjct: 354 IEEYIGYSVPEKEIPQEE-EIEKGKKLFEEKARQRPKFK 391


>gi|54293256|ref|YP_125671.1| hypothetical protein lpl0304 [Legionella pneumophila str. Lens]
 gi|53753088|emb|CAH14535.1| hypothetical protein lpl0304 [Legionella pneumophila str. Lens]
          Length = 414

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 136/362 (37%), Gaps = 43/362 (11%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +   + +  + ++ PT  Q  AI  IL           +     G+GKT   ++ +    
Sbjct: 10  EPLNRAVSELGYTTPTSIQLKAIPLILNGHD------LLGSAQTGTGKTASFVLPILQ-- 61

Query: 319 EAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +AG Q          +I+ P   LA Q +E I +Y +   +   +I G +   ++ K L+
Sbjct: 62  KAGQQTPASPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLD 121

Query: 370 RIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-----AT 419
                   I++ T     D     ++++ ++  +++DE  R      +   +K       
Sbjct: 122 S----GLEILVATPGRLLDLYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPL 177

Query: 420 APHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
               LL +AT  P  RTL    L       I  +    K IK  +  ++R  ++     +
Sbjct: 178 KRQNLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHL 237

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           +         +  + +           +    L E    S+AI HG  S   +   +  F
Sbjct: 238 LHKNNWGQTLVFSRTKHGA-------NKLVKQLAESQIYSVAI-HGNKSQAQRTKALADF 289

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K+G  + LIAT +   GID+   + ++  +  H     +H++ GR GR       + L  
Sbjct: 290 KSGKVQTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRI-GRTGRAGASGLAVSLVS 348

Query: 598 PP 599
             
Sbjct: 349 TE 350


>gi|86133373|ref|ZP_01051955.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85820236|gb|EAQ41383.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 606

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 76/366 (20%), Positives = 136/366 (37%), Gaps = 37/366 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L ++ +  PT  QE AI  I+      +          G+GKT    + +   +E     
Sbjct: 17  LTDLGYEKPTVIQEKAIPQIIS-----SDTDLKAFAQTGTGKTAAFSLPILELLEEDNNN 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I++P   LA Q    IK + +  + + V  + G      + ++L++     + I++
Sbjct: 72  VQAIILSPTRELAVQIGNNIKDFCKYLKNVKVTTVYGGSSMEDQIRSLKK----GSQIVV 127

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATP 430
           GT     D I    L L  V        DE    G ++ L   L         LL +AT 
Sbjct: 128 GTPGRTVDLINRRALKLGNVRWLVLDEADEMLNMGFKEELDKVLEATPETKQTLLFSATF 187

Query: 431 IPRTLVLTSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYW 487
                 +         ++T  EK +G + +      +          ++  L+    A  
Sbjct: 188 PREVEAIARNYMTTPVEVTSGEKNSGSENVSHEYYAVTERTRYPALKRIADLNPDIYAII 247

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C    E +E     + + +N+           +HG +S   ++SVM  F+  T ++L+A
Sbjct: 248 FCRTRRETQEVADNLIKDGYNA---------DSLHGDLSQAQRDSVMGKFRKKTIQILVA 298

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV + + +I            H+  GR GR       I+L +          
Sbjct: 299 TDVAARGLDVTELTHVINHKLPDQIENYTHR-SGRTGRAGNKGVSIVLVNNREKGKLRVI 357

Query: 608 LSVLKN 613
             ++K 
Sbjct: 358 ERIIKQ 363


>gi|331696881|ref|YP_004333120.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951570|gb|AEA25267.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 659

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 78/365 (21%), Positives = 129/365 (35%), Gaps = 47/365 (12%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
              Q+ L  + +  P+  Q  AI  ++           I Q   G+GKT    + M   +
Sbjct: 99  PELQRALDELGYERPSPIQAEAIPSLIDGRD------LIGQAATGTGKTAAFALPMLQRL 152

Query: 319 EAGGQA--------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
               +         +++AP   LA Q  E I +Y +  +  V  + G  P   +  AL+R
Sbjct: 153 AQERRGSRGTAPLGLVLAPTRELAMQVTEAIARYGKGLRARVLAVYGGAPIGPQLGALKR 212

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATA 420
                  +++ T     D I    L        +L   DE    G  + +   L      
Sbjct: 213 ----GVDVVVATPGRAIDLINRGALSLDELEVVVLDEADEMLDMGFVEDIETILQATPDT 268

Query: 421 PHVLLMTATPIPRT--LVLTSLGDIDISKI--TEKPAGRKP---IKTVIIPINRIDEVIE 473
              +L +AT   R   L  T L D  + +I   E P G  P       ++P +     + 
Sbjct: 269 RQAVLFSATMPRRIEVLARTYLTDPVLVRIQREEVPEGEAPRVRQTAYMVPRSHTTAAL- 327

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
              + L     A   C           R+ V+               +HG M    +  V
Sbjct: 328 GRILELERPTAAIVFCRT---------RADVDAVTEALTGRGLRAEALHGGMDQEHRTRV 378

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +D  +NG   LL+AT V   G+D+   + ++  +      + +H++ GRVGR       I
Sbjct: 379 VDRLRNGRTDLLVATDVAARGLDIDQLTHVVNHDVPKSPESYVHRI-GRVGRAGREGVAI 437

Query: 594 LLYHP 598
            L  P
Sbjct: 438 TLVAP 442


>gi|145628549|ref|ZP_01784349.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|145639856|ref|ZP_01795457.1| preprotein translocase subunit SecF [Haemophilus influenzae PittII]
 gi|144979019|gb|EDJ88705.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|145271074|gb|EDK10990.1| preprotein translocase subunit SecF [Haemophilus influenzae PittII]
          Length = 613

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 132/364 (36%), Gaps = 36/364 (9%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+S I  +L           +     GSGKT    + + A +   E   
Sbjct: 21  SDLGFETPSPIQQSCIPHLLSG------NDVLGMAQTGSGKTAAFALPLLAQIDPSEKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  + + +      +  + G      R     R     A +++G
Sbjct: 75  QMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGG----QRYDIQLRALKQGAQVVVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 131 TPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMP 190

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I      ++ + +    L+ +  E   A  I 
Sbjct: 191 EPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +NG+  +++AT 
Sbjct: 251 ARTKTGTLD--------ITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S+++  +      + +H++ GR GR       +L   P   +       
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEH 361

Query: 610 VLKN 613
           ++K 
Sbjct: 362 LMKK 365


>gi|68248840|ref|YP_247952.1| cold-shock DEAD-box protein A-like protein [Haemophilus influenzae
           86-028NP]
 gi|68057039|gb|AAX87292.1| Cold-shock DEAD-box protein A homolog [Haemophilus influenzae
           86-028NP]
          Length = 613

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 133/364 (36%), Gaps = 36/364 (9%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q++ I  +L           +     GSGKT    + + A +   E   
Sbjct: 21  SDLGFETPSPIQQACIPHLLNG------NDVLGMAQTGSGKTAAFALPLLAQIDPSEKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  +++ +      +  + G      R     R     A +++G
Sbjct: 75  QMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGG----QRYDIQLRALKQGAQVVVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 131 TPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMP 190

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I      ++ + +    L+ +  E   A  I 
Sbjct: 191 EPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +NG+  +++AT 
Sbjct: 251 ARTKTGTLD--------ITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S+++  +      + +H++ GR GR       +L   P   +       
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEH 361

Query: 610 VLKN 613
           ++K 
Sbjct: 362 LMKK 365


>gi|331654768|ref|ZP_08355768.1| cold-shock DEAD box protein A (ATP-dependent RNA helicasedeaD)
           [Escherichia coli M718]
 gi|331048150|gb|EGI20227.1| cold-shock DEAD box protein A (ATP-dependent RNA helicasedeaD)
           [Escherichia coli M718]
          Length = 651

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 43  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 96

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 97  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 152

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 153 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 212

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 213 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 268

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 269 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 320

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 321 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 379

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 380 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 434

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 435 TAE---GEELDLETLAAALLKMA 454


>gi|301047996|ref|ZP_07195038.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 185-1]
 gi|300300139|gb|EFJ56524.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 185-1]
          Length = 646

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 38  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 91

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 92  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 147

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPAGHQTALFSATM 207

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 263

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 264 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 315

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S++I  +      + +H++ GR GR       +L       +  
Sbjct: 316 LIATDVAARGLDVERISLVINYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 374

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 375 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 429

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 430 TAE---GEELDLETLAAALLKMA 449


>gi|168260141|ref|ZP_02682114.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205350697|gb|EDZ37328.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 457

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 137/358 (38%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVTLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKETVSLDAL-HILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   ++PI+  I  ++ +   IE+     S  +K   +   + + +    
Sbjct: 187 WPEAIAAISGR-VQQQPIRIEIDTVDALP-AIEQQFFETSAHEKISLLQTLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNYELAWDPEVHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQ 361


>gi|17546930|ref|NP_520332.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
 gi|17429230|emb|CAD15918.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 495

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 129/360 (35%), Gaps = 34/360 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----------- 322
           T  Q +AI  ++           +     G+GKT    + +   +               
Sbjct: 39  TPIQAAAIPVVIAGRDV------MGAAQTGTGKTAGFSLPIIQNLLPDANTSASPARHPV 92

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q Y+ + KY ++T +   ++ G +    + + L R       +++ T
Sbjct: 93  RALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQTEQLRR----GVEVLVAT 148

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D +Q   + L  V          R+           ++       +TL+ ++   
Sbjct: 149 PGRLLDHVQQRSVNLSQV-RMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSATFS 207

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---- 498
            +I K+        P    +   N   + + ++   + +G K   +   + ++ E     
Sbjct: 208 PEIKKLAASYLRH-PQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQRAEQGLPS 266

Query: 499 ------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N +    R     E    +   IHG  +  ++   +++FK GT  +L+AT V  
Sbjct: 267 QCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQGTVDVLVATDVAA 326

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+     +I  +        +H++ GR GR       + L+ P   +       ++K
Sbjct: 327 RGLDISQMPCVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLFAPGDERLLADIEKLIK 385


>gi|325497405|gb|EGC95264.1| ATP-dependent RNA helicase DbpA [Escherichia fergusonii ECD227]
          Length = 457

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 135/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDIR------VQAKTGSGKTAAFGLGLLQHIDATLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGIQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLEAL-HTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +  V E+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLTIEIDSTDALPPV-EQHFYETSSSGKISLLQRLLSVYQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R  +    I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGKSGLAISFCAPEEAQRANIISDMLQ 361


>gi|213402561|ref|XP_002172053.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000100|gb|EEB05760.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 626

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 56/390 (14%), Positives = 134/390 (34%), Gaps = 56/390 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGG-------- 322
            PT  Q+ ++  +            +     GSGKT   L  +   A + G         
Sbjct: 184 QPTPVQKYSVPIVTSGRD------LMACAQTGSGKTAGFLFPILSQAFDQGPAPIPHDED 237

Query: 323 ------------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                         +I+AP   L  Q +E  +K+   + +    + G      + + +++
Sbjct: 238 SALGYRSRKAYPTTLILAPTRELVCQTHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQ 297

Query: 371 IAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPH 422
                  ++  T     D I   +        L+L   D     G + +++   +     
Sbjct: 298 ----GCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGAD-- 351

Query: 423 VLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
              M      +TL+ ++    DI  +  +   +  +   +  +    E I +  V + + 
Sbjct: 352 ---MPGVEERQTLMFSATFPRDIQVLA-RDFLKDYVFLSVGRVGSTSENITQKVVFVEDQ 407

Query: 483 KKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           +K  ++   +               + + +       + +     IHG  +  ++E  ++
Sbjct: 408 EKRSYLLDILHTLPPEGLTLIFVETKRMADALTDFLLNSSFPATSIHGDRTQRERERALE 467

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F++G   +++AT V   G+D+ + + +I  +        +H++ GR GR       +  
Sbjct: 468 LFRSGRSSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGQAVAF 526

Query: 596 YHPPLSKNSYTRLSVLKNTED---GFLIAE 622
           ++      +   + +L+        FL+A 
Sbjct: 527 FNRNNKGIAKELIELLQEANQECPSFLVAM 556


>gi|153009469|ref|YP_001370684.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561357|gb|ABS14855.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 464

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 130/347 (37%), Gaps = 39/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            P   Q  AI   L+          +     GSGKT    + +   +            +
Sbjct: 37  EPKPIQLQAIPHQLEGRD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTAR 90

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  + I+  +++  I   ++ G + +  + K +         ++I T 
Sbjct: 91  ALILAPTRELAVQIEQTIRNVSKHAHISTALVLGGVSKLSQIKRIAP----GIDVLIATP 146

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL--LMTATPIPR 433
               D +        Q   L+L   D     G    +K   KAT       L +AT    
Sbjct: 147 GRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHSDRQTALFSATMPKE 206

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L      D  ++   P G     I  V+ P++  ++      ++  +  ++  +  +
Sbjct: 207 IASLAGSLLHDPVRVEVAPQGTTAAEITQVVHPVHTKEKRRLLSALLGDKAMRSVIVFTR 266

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +   ++  R          E     +A IHG  S   ++  ++ F++G+ ++LIAT + 
Sbjct: 267 TKHGADAVVRH--------LERDGYEVAAIHGNKSQNARQRALNGFRDGSLRILIATDIA 318

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 319 ARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 364


>gi|149187436|ref|ZP_01865734.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           shilonii AK1]
 gi|148838972|gb|EDL55911.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           shilonii AK1]
          Length = 442

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 117/352 (33%), Gaps = 26/352 (7%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QAVI 326
           T  Q+ AI   +           +     GSGKTL  ++ M               +AVI
Sbjct: 25  TDIQKQAIPVAIAGKD------LLASSKTGSGKTLAFVLPMLHKALKSKAFSARDPRAVI 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +AP   LA+Q Y  +K           +I G      + KAL R        I+ T    
Sbjct: 79  LAPTRELAKQVYGELKSMLGGLSYDATLILGGENFNDQVKALRRY----PKFIVATPGRL 134

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            D +++  L L  +D        + L L        +         +TL+ ++  D    
Sbjct: 135 ADHLEHRSLFLDGLDTLILDEADRMLDLGFAPELRRIHNAAKHRRRQTLMFSATLDHAEV 194

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------ 500
                     P +  I   N   + I +   +         I  +I E+ E         
Sbjct: 195 NDIAAEMLDAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERILEQAEYKQVIIFTA 254

Query: 501 -RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER              + G ++   + ++M  F+    K+L+ T V   GID+  
Sbjct: 255 TRVDTERLTKWLNEKKLKAVALSGNLNQTQRNAIMSQFERHVFKILVTTDVASRGIDIAS 314

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            + +I  +        +H++ GR GR       + L  P    +S+ R+   
Sbjct: 315 VTHVINFDMPKHTEEYVHRV-GRTGRAGNKGDAVSLVGPK-DWDSFKRVEAF 364


>gi|38564733|gb|AAR23806.1| initiation factor eIF4A-15 [Helianthus annuus]
          Length = 413

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 125/341 (36%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFTKGLDV------IQQAQSGTGKTATFCSGILQQLDYNVVECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L +T
Sbjct: 172 MLRRQSLRSDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + + + +  +E L          Y      +   
Sbjct: 232 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   S++I  +        LH++ GR GR       I    
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVT 384


>gi|325114293|emb|CBZ49850.1| putative ATP-dependent DNA helicase [Neospora caninum Liverpool]
          Length = 1801

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 134/284 (47%), Gaps = 8/284 (2%)

Query: 133  KNRIIMVHPHYIFHNSQDV-NFPLIEAVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEK 191
              R+    P      + D  +   +  +Y   +G+   + +  I   L R     E + +
Sbjct: 798  DRRVRSAGPEMKTQTNPDTYHLHKLMPIYPSISGVPAKVLRAGIETLL-RENSFAEVVPE 856

Query: 192  DLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK-KE 250
             L +K+    +      +H P+   D      A+    Y  +L  Q+A  L  ++ + + 
Sbjct: 857  FLRRKRGIERLDATLRALHYPQTPADI---RKAKRDFFYSTMLWLQLAKKLRTREVESQF 913

Query: 251  IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
             G       +I +    ++ F  T SQ  AI++I  DM     M R+LQGDVGSGKT VA
Sbjct: 914  RGYASRAGEEILRAFYASLEFPLTPSQLQAIEEIRADMESPRPMRRLLQGDVGSGKTAVA 973

Query: 311  LIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
             +A+  +  AG QA ++AP   LA+QH   ++K+       V ++  + P       +  
Sbjct: 974  AVALLLSASAGHQAALLAPTAALARQHQINLQKFLGPLGFHVHLLVSDAPDKD--ATIRL 1031

Query: 371  IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414
            I  G A I +GTHAL QD + + +L LV++DEQH+FGV QR KL
Sbjct: 1032 INTGNAEITVGTHALLQDYVLFPRLGLVVIDEQHKFGVNQRWKL 1075



 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 70/186 (37%), Positives = 102/186 (54%), Gaps = 8/186 (4%)

Query: 491  QIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             ++ +      + V+RF  L +      I ++HGRM   +KE V+   + GT  LL+ATT
Sbjct: 1394 LVQGQGSCKESAAVQRFEELRKLLPEIRIRLLHGRMRAEEKEEVLSELRGGTVDLLVATT 1453

Query: 550  VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHP---PLSKNSY 605
            V+EVGID+ +AS+I+I++AE FGL QLHQLRGRVGR     S C ++  P    L + + 
Sbjct: 1454 VVEVGIDIPNASVIVIDSAERFGLTQLHQLRGRVGRDARHPSFCFIILDPLNKNLDEKAM 1513

Query: 606  TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKF---LIAQPELHDSLLEIARKD 662
             R + +  T DGF +AE D + R  G + G +Q G          +      LLE A +D
Sbjct: 1514 HRFAAIAATTDGFQLAETDAQLRGGGTLFGQQQHGQSDLWMIRGLKRSEQARLLEEATED 1573

Query: 663  AKHILT 668
            A HI+ 
Sbjct: 1574 ADHIVK 1579


>gi|319944378|ref|ZP_08018652.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
 gi|319742339|gb|EFV94752.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
          Length = 546

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 74/346 (21%), Positives = 126/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q  AI  ++           +     G+GKT    + +   +             
Sbjct: 40  KPTPIQAKAIPVVMAGHDV------MAAAQTGTGKTAGFALPIINVLMPSASHSASPARH 93

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+AP   LA Q ++ +K Y Q T +    + G +    +  AL         I+I
Sbjct: 94  PVRALIIAPTRELADQIHDNVKTYIQFTPLRSAAVFGGVDMQPQTNALRA----GVEILI 149

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D +Q   + L  V     DE  R      L   Q       ++    P  + L
Sbjct: 150 ATPGRLLDHVQQKSVNLSQVQLLVLDEADRMLDMGFLPDIQ------RIINLLNPRRQNL 203

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I K+ ++      +  V  P    + V + +  V SE  K   +   I E+
Sbjct: 204 MFSATFSDEIRKLAKRFLNEPKLIEVARPNTLAENVEQTVYHVPSEDLKRDAVGALIRER 263

Query: 496 ------KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                   SN +    R     +        IHG  S  ++   +D FK G  K+L+AT 
Sbjct: 264 GIEQVIVFSNTKIGAGRLARHLQKEGFLAEAIHGDKSQQERLKTLDGFKAGEIKVLVATD 323

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           V   G+D+ +   +I  +  H     +H++ GR GR       + L
Sbjct: 324 VAARGLDIAELPAVINYDLPHSPEDYVHRI-GRTGRAGASGMALSL 368


>gi|204927708|ref|ZP_03218909.1| ATP-dependent rna helicase, dead/deah box family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204323050|gb|EDZ08246.1| ATP-dependent rna helicase, dead/deah box family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 457

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 137/358 (38%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVTLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKETVSLDAL-HILVMDEADRMLDMGFSDAIDEVIHFAPATRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   ++PI+  I  ++ +   IE+     S  +K   +   + + +    
Sbjct: 187 WPDAIAAISGR-VQQQPIRIEIDTVDALP-AIEQQFFETSAHEKISLLQTLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNYELAWDPEVHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQ 361


>gi|224142804|ref|XP_002324737.1| predicted protein [Populus trichocarpa]
 gi|118481206|gb|ABK92554.1| unknown [Populus trichocarpa]
 gi|222866171|gb|EEF03302.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYDVVECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 172 MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ +  +E L          Y      +   
Sbjct: 232 RKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTKD 386


>gi|17545258|ref|NP_518660.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
 gi|17427549|emb|CAD14067.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 540

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 128/366 (34%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA---AAVEAGG------ 322
            PT  Q  AI  IL+          +     G+GKT    + +    +AV+         
Sbjct: 23  EPTPIQRQAIPAILKG------GDLLAGAQTGTGKTAGFTLPLLHRLSAVQPNKVQTPHG 76

Query: 323 -----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                +A+++ P   LA Q  E ++ Y +   +   ++ G +    +  AL+R       
Sbjct: 77  MRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKR----GVD 132

Query: 378 IIIGTHALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I++ T     D +         + L+++DE  R      +   +K      +L    P  
Sbjct: 133 IVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRK------ILNILPPKR 186

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           + L+ ++    DI  + ++    +P    +   N   E +E+    +   +K   +   +
Sbjct: 187 QNLLFSATFSDDIRALADRLLD-QPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLV 245

Query: 493 EEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +            +    R              IHG  S   +   +  FK GT ++L+
Sbjct: 246 SDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFKAGTLRVLV 305

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT +   GID+     ++  +  +     +H++ GR GR       I L           
Sbjct: 306 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGAQGEAISLVCVDEHGLLRD 364

Query: 607 RLSVLK 612
              ++K
Sbjct: 365 IERLIK 370


>gi|115352774|ref|YP_774613.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115282762|gb|ABI88279.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 480

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 123/357 (34%), Gaps = 29/357 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           SPT  Q+ AI  +L           +     G+GKT    + +   +             
Sbjct: 23  SPTPIQQQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHTYYAEHRGAKRA 76

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R       I++ 
Sbjct: 77  VRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----GVDIVVA 132

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +Q   + L  +D         R+           +L    P  + L+ ++  
Sbjct: 133 TPGRLLDHMQQKTIDLSNLD-ILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATF 191

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-- 499
             +I  + +      P    +   N   E + +    +   +K   +   I E       
Sbjct: 192 SDEIKSLADSLLD-SPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVL 250

Query: 500 ----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +    R          S   IHG  S   +   +  FK+ T ++L+AT +   GI
Sbjct: 251 VFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLVATDIAARGI 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           D+     ++  +  +     +H++ GR GR       + L      +       ++K
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLVCVDEKQLLRDIERLIK 366


>gi|256269719|gb|EEU04989.1| Dbp3p [Saccharomyces cerevisiae JAY291]
          Length = 523

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 144/383 (37%), Gaps = 45/383 (11%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
           +   P  PT  Q  A   +L           +   + GSGKT    +   + +       
Sbjct: 129 ISKFP-KPTPIQAVAWPYLLSGKDV------VGVAETGSGKTFAFGVPAISHLMNDQKKR 181

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q ++++P   LA Q Y+ +   T    +    + G +P+  +R  L++       +++
Sbjct: 182 GIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKS-----QVVV 236

Query: 381 GTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK------ATAPHVLLMTAT 429
            T     D     S+   ++  +++DE  R   +   +  +       A+    L+ TAT
Sbjct: 237 ATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTAT 296

Query: 430 PIPRTLVLTSLGDIDISKIT-------EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
                  L S    +  K++               I  V+ P  +  +++E LK   S  
Sbjct: 297 WPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGP 356

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           KK   +      KKE+       R     ++   ++A IHG +S   +   ++ FK+G  
Sbjct: 357 KKNEKVLIFALYKKEA------ARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKS 410

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+AT V   G+D+ +   +I           +H++ GR GR  +  +   L+      
Sbjct: 411 NLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRI-GRTGRAGQTGTAHTLFTEQEKH 469

Query: 603 NSYTRLSVLKNTEDGFLIAEEDL 625
            +   ++VL           EDL
Sbjct: 470 LAGGLVNVLNGAN---QPVPEDL 489


>gi|239830975|ref|ZP_04679304.1| DEAD-box ATP-dependent RNA helicase ydbR [Ochrobactrum intermedium
           LMG 3301]
 gi|239823242|gb|EEQ94810.1| DEAD-box ATP-dependent RNA helicase ydbR [Ochrobactrum intermedium
           LMG 3301]
          Length = 641

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 74/364 (20%), Positives = 148/364 (40%), Gaps = 44/364 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           + T  Q + +       S+      ++    GSGKT+   +AMA  +        +AG  
Sbjct: 22  TLTAVQNAVLA------SETLDADLLVSAQTGSGKTVAFGLAMANTILEDELRFGDAGAP 75

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+AP   LA Q    ++    +T   +    G M     R+ALER     AHI++GT
Sbjct: 76  LAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GAHIVVGT 131

Query: 383 HALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
               +D I        +   ++L   DE    G ++ L+           L  A    RT
Sbjct: 132 PGRLRDHITRDALDMSELRAVVLDEADEMLDMGFREDLEFI---------LGEAPENRRT 182

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I+++ ++        TV    ++  + I+ + + +   ++ + I   +  
Sbjct: 183 LMFSATVPKPIAQLAKRFQNDALRLTVQSETSQHAD-IDYVAMPVPPHERDHAIINTLLY 241

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
               N       R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +AT
Sbjct: 242 YDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+ +  ++I  +  +     LH+  GR GR     +C+L+      + +   L
Sbjct: 302 DVAARGIDLPNLDLVIHADLPNNPETMLHR-SGRTGRAGRKGTCVLVVPFSRRRTAERLL 360

Query: 609 SVLK 612
            + K
Sbjct: 361 HMAK 364


>gi|224007100|ref|XP_002292510.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972152|gb|EED90485.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 365

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 128/351 (36%), Gaps = 44/351 (12%)

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEAGG---------------QAVIMAPIGILAQQHYE 339
             +     GSGKT   L  +   +   G               + +++AP   LA Q  +
Sbjct: 12  DLMACAQTGSGKTAGFLFPIIITMLRNGGTEPEGGVRGRRTYPECLVLAPTRELASQIQD 71

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL---- 395
             +K+   T I   ++ G      + + +ER       +++ T     D I+  +L    
Sbjct: 72  EAQKFLYCTGIASVVVYGGADVRDQLRQIER----GCDLLVATPGRLVDLIERGRLSMEN 127

Query: 396 ----ILVIVDEQHRFGVQQRLKLT------QKATAPHVLLMTATPI--PRTLVLTSLGDI 443
               +L   D     G + +++                ++ +AT     + L    + D 
Sbjct: 128 VKFLVLDEADRMLDMGFEPQIRRIVEQEGMPHGDDRQTMMFSATFPANIQRLAGDFMRDY 187

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
               +    +  + +   +  + + D++   ++ +L+   +   I   +E K+  +F   
Sbjct: 188 IFLTVGRVGSASENVVQSVEYVEQNDKLDALMRFLLT--IQEGLILIFVETKRNCDF--- 242

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
                 +          IHG  S  ++E  + +FK G C +L+AT V   G+D+ + + +
Sbjct: 243 ---VEDILCERGFPACSIHGDKSQREREDSLRAFKTGRCPVLVATDVAARGLDIPNVTQV 299

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +  +        +H++ GR GR     + +   +   S  +     +L+ +
Sbjct: 300 VNYDLPTNIDDYVHRI-GRTGRAGNTGAALSFVNEKNSGVARELRELLEES 349


>gi|11602713|emb|CAC18543.1| translation initiation factor 4A-like protein [Echinococcus
           multilocularis]
          Length = 403

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 76/342 (22%), Positives = 124/342 (36%), Gaps = 33/342 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+ AIK I+           I Q   G+GKT    IA    ++      Q +I++P
Sbjct: 53  PSAIQQRAIKQIILGRDV------IAQAQSGTGKTATLAIASLQVLDIQLRDTQVLILSP 106

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I        +      G        K L+       HI+ GT     D 
Sbjct: 107 TRELALQIQKVILVLGDFMNVQCHACYGGTNVGEDIKKLDYGQ----HIVSGTPGRVFDM 162

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLTS 439
           I+   L        IL   DE    G ++++            V+L++AT     L +TS
Sbjct: 163 IKRRNLRTRTIKLLILDEADEMLDKGFKEQIYDVYRYLPPGTQVVLLSATMPHDILEMTS 222

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
               D  +I  K      + IK   + + R +   E L          Y      +    
Sbjct: 223 KFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFETL-------CDLYDTLTVTQSVIF 275

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N R   E           ++ ++HG M   ++E +M +F++   ++LI T ++  GIDV
Sbjct: 276 CNTRRKAEWLADKMCKSNFTVTVMHGDMVQKEREEIMRNFRSSESRVLITTDLLARGIDV 335

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              S++I     +     +H++ GR GR       I      
Sbjct: 336 QQVSMVINYGLPNNRELYIHRI-GRSGRFGRKGVAINFVKNE 376


>gi|328945532|gb|EGG39683.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1087]
          Length = 523

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 130/362 (35%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          ++      QA+I+AP 
Sbjct: 25  SPIQEKTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLNQIETLILDEADEMLNMGFLEDIES-------IISRVPEERQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            K       ++P    I       E++++  + + E +K   +   ++  +         
Sbjct: 188 IKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVDQPELSIVFGR 247

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|262066543|ref|ZP_06026155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379777|gb|EFE87295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 528

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 126/342 (36%), Gaps = 34/342 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAP 329
           SPT  Q   I  +L     KN    I Q   G+GKT    + +    E     QA+++ P
Sbjct: 30  SPTPIQRLTIPALL-----KNDKDIIGQAQTGTGKTAAFSLPIIENFEHSDHIQAIVLTP 84

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +   + + ++ V  + G      +RK ++        +++GT     D 
Sbjct: 85  TRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKT----GVDVVVGTPGRVIDL 140

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTS 439
           I+   L L  +        DE    G  + ++     T     +L  +AT  P  + +  
Sbjct: 141 IERKLLKLNSLKYFVLDEADEMLNMGFVEDIEKILTFTNDDKRMLFFSATMPPEIMKIAK 200

Query: 440 LGDIDISKITEKPAGRKPIKTVII--PINRIDEVIERLKVV-LSEGKKAYWICPQIEEKK 496
               +   +  K        T  I   +N  D+     +++ L++       C    +  
Sbjct: 201 THMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGIIFCRTKTDVN 260

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           E   R     +++           +HG +    +E  +  FK     +L+AT V   GID
Sbjct: 261 EIVGRLNDRGYDA---------EGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + D S +I         + +H++ GR GR  +  + I    P
Sbjct: 312 INDLSHVINYAIPQEVESYVHRI-GRTGRAGKEGTAITFITP 352


>gi|12517770|gb|AAG58298.1|AE005544_12 inducible ATP-independent RNA helicase [Escherichia coli O157:H7
           str. EDL933]
 gi|13363516|dbj|BAB37466.1| inducible ATP-independent RNA helicase [Escherichia coli O157:H7
           str. Sakai]
 gi|209758398|gb|ACI77511.1| inducible ATP-independent RNA helicase [Escherichia coli]
 gi|209758400|gb|ACI77512.1| inducible ATP-independent RNA helicase [Escherichia coli]
 gi|209758402|gb|ACI77513.1| inducible ATP-independent RNA helicase [Escherichia coli]
 gi|209758406|gb|ACI77515.1| inducible ATP-independent RNA helicase [Escherichia coli]
          Length = 646

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 38  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 91

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 92  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 147

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 263

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 264 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 315

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 316 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 374

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 375 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 429

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 430 TAE---GEELDLETLAAALLKMA 449


>gi|327468980|gb|EGF14452.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330]
          Length = 523

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 131/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          ++      QA+I+AP 
Sbjct: 25  SPIQEQTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLNQIETLILDEADEMLNMGFLEDIES-------IISRVPEERQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            K       ++P    I       E++++  + + E +K   +   ++ ++         
Sbjct: 188 IKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGR 247

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|301022016|ref|ZP_07185959.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 69-1]
 gi|300397731|gb|EFJ81269.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 69-1]
          Length = 646

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 38  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 91

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 92  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 147

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 263

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 264 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 315

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 316 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 374

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 375 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 429

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 430 TAE---GEELDLETLAAALLKMA 449


>gi|218706784|ref|YP_002414303.1| ATP-dependent RNA helicase DeaD [Escherichia coli UMN026]
 gi|218433881|emb|CAR14798.1| ATP-dependent RNA helicase [Escherichia coli UMN026]
 gi|284923186|emb|CBG36280.1| ATP-dependent RNA helicase (DEAD-box protein) [Escherichia coli
           042]
          Length = 655

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 43  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 96

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 97  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 152

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 153 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 212

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 213 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 268

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 269 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 320

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 321 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 379

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 380 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 434

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 435 TAE---GEELDLETLAAALLKMA 454


>gi|170694034|ref|ZP_02885190.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170141106|gb|EDT09278.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 467

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 159/444 (35%), Gaps = 59/444 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +++   L           I Q   GSGKT    +A+ A ++     
Sbjct: 24  LTQLGYVEMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDTRNFA 77

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    I V  + G  P   +  +LE      AHI++
Sbjct: 78  VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH----GAHIVV 133

Query: 381 GTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D ++   L L     +++DE  R                  ++       +TL
Sbjct: 134 GTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIA------TVVRQCPKERQTL 187

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I K++++       K V +     +  I +    ++E ++ + +   +   
Sbjct: 188 LFSATYPEGIVKLSQQFLRNP--KEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLNHY 245

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 246 RPVSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATD 305

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH------------ 597
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 306 VAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQEGWALSLASMNEMGRVGGLEQ 364

Query: 598 -PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLIA 647
                   +    +   + +  L   E L+           G++LG     +G     I 
Sbjct: 365 AHKRDVEWHKLSELTPKSNEPLLPPMETLQILGGRKEKIRPGDVLGALTGDAGFAGSQIG 424

Query: 648 QPELHDS--LLEIARKDAKHILTQ 669
           +  + +    + + R  A+  + +
Sbjct: 425 KINVTEMSTYVAVERSIAREAVRK 448


>gi|149244712|ref|XP_001526899.1| eukaryotic initiation factor 4A-12 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032453|sp|A5DWJ1|FAL1_LODEL RecName: Full=ATP-dependent RNA helicase FAL1
 gi|146449293|gb|EDK43549.1| eukaryotic initiation factor 4A-12 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 399

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 144/394 (36%), Gaps = 40/394 (10%)

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           E        + + + F+     P  ++G  A          P+  Q  AI  I+      
Sbjct: 13  EFSHKSTKGVKVHRTFESMRLKPELLKGIYAYGFEA-----PSAIQSRAIMQIISGRDT- 66

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNT 348
                I Q   G+GKT    I M   +++     QA++++P   LA Q    IK      
Sbjct: 67  -----IAQAQSGTGKTATFSIGMLEVLDSKSKECQALVLSPTRELATQIQNVIKHLGDYM 121

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIV 400
            I      G        K L++       I+ GT     D I+   L        IL   
Sbjct: 122 NIQTYACIGGKNVGTDIKRLQQGQ----QIVSGTPGRVLDVIKRRNLSTRHIKMLILDEA 177

Query: 401 DEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           DE    G ++++    K   P   V++++AT     L +T     D  KI         +
Sbjct: 178 DELFTKGFKEQIYEIYKHLPPGVQVVVVSATLTHEVLEMTGKFTTDPVKIL--------V 229

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---T 515
           K   + ++ I +   + +    +      +   +   +   F +   + N L +      
Sbjct: 230 KREEVSLSGIKQYYIQCEKEDWKFDTLCDLYDNLTITQAVIFCNTKIKVNWLTDQMRKQN 289

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
            ++  +HG M   +++++M+ F++G  ++LI+T V   GIDV   S++I  +        
Sbjct: 290 FTVVAMHGDMKQEERDAIMNDFRSGNSRVLISTDVWARGIDVQQISLVINYDLPLDKENY 349

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +H++ GR GR     + I L     +        
Sbjct: 350 IHRI-GRSGRFGRKGTAINLLTKSDTIELKALEK 382


>gi|110807031|ref|YP_690551.1| ATP-dependent RNA helicase DeaD [Shigella flexneri 5 str. 8401]
 gi|157154820|ref|YP_001464636.1| ATP-dependent RNA helicase DeaD [Escherichia coli E24377A]
 gi|157162647|ref|YP_001459965.1| ATP-dependent RNA helicase DeaD [Escherichia coli HS]
 gi|187731310|ref|YP_001881921.1| ATP-dependent RNA helicase DeaD [Shigella boydii CDC 3083-94]
 gi|188491860|ref|ZP_02999130.1| cold-shock DEAD box protein A [Escherichia coli 53638]
 gi|237706085|ref|ZP_04536566.1| cold-shock DEAD-box protein A [Escherichia sp. 3_2_53FAA]
 gi|254038328|ref|ZP_04872386.1| cold-shock DEAD-box protein A [Escherichia sp. 1_1_43]
 gi|293412537|ref|ZP_06655260.1| conserved hypothetical protein [Escherichia coli B354]
 gi|331643862|ref|ZP_08344993.1| cold-shock DEAD-box protein A [Escherichia coli H736]
 gi|331648963|ref|ZP_08350051.1| cold-shock DEAD-box protein A [Escherichia coli M605]
 gi|331674700|ref|ZP_08375459.1| cold-shock DEAD-box protein A [Escherichia coli TA280]
 gi|332280007|ref|ZP_08392420.1| cold-shock DEAD-box protein A [Shigella sp. D9]
 gi|26110171|gb|AAN82357.1|AE016767_117 Cold-shock DEAD-box protein A [Escherichia coli CFT073]
 gi|110616579|gb|ABF05246.1| inducible ATP-independent RNA helicase [Shigella flexneri 5 str.
           8401]
 gi|157068327|gb|ABV07582.1| cold-shock DEAD box protein A [Escherichia coli HS]
 gi|157076850|gb|ABV16558.1| cold-shock DEAD box protein A [Escherichia coli E24377A]
 gi|187428302|gb|ACD07576.1| cold-shock DEAD box protein A [Shigella boydii CDC 3083-94]
 gi|188487059|gb|EDU62162.1| cold-shock DEAD box protein A [Escherichia coli 53638]
 gi|226839952|gb|EEH71973.1| cold-shock DEAD-box protein A [Escherichia sp. 1_1_43]
 gi|226899125|gb|EEH85384.1| cold-shock DEAD-box protein A [Escherichia sp. 3_2_53FAA]
 gi|281602546|gb|ADA75530.1| Cold-shock DEAD-box protein A [Shigella flexneri 2002017]
 gi|291469308|gb|EFF11799.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294492243|gb|ADE90999.1| cold-shock DEAD box protein A [Escherichia coli IHE3034]
 gi|331037333|gb|EGI09557.1| cold-shock DEAD-box protein A [Escherichia coli H736]
 gi|331042710|gb|EGI14852.1| cold-shock DEAD-box protein A [Escherichia coli M605]
 gi|331068139|gb|EGI39535.1| cold-shock DEAD-box protein A [Escherichia coli TA280]
 gi|332102359|gb|EGJ05705.1| cold-shock DEAD-box protein A [Shigella sp. D9]
          Length = 651

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 43  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 96

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 97  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 152

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 153 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 212

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 213 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 268

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 269 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 320

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 321 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 379

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 380 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 434

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 435 TAE---GEELDLETLAAALLKMA 454


>gi|38704144|ref|NP_312070.2| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           Sakai]
 gi|161367519|ref|NP_289738.2| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 EDL933]
 gi|168749243|ref|ZP_02774265.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754142|ref|ZP_02779149.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762127|ref|ZP_02787134.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4501]
 gi|168769579|ref|ZP_02794586.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773172|ref|ZP_02798179.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781305|ref|ZP_02806312.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786046|ref|ZP_02811053.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC869]
 gi|168797762|ref|ZP_02822769.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC508]
 gi|195938382|ref|ZP_03083764.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806131|ref|ZP_03248468.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812019|ref|ZP_03253348.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818284|ref|ZP_03258604.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400297|ref|YP_002272633.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327948|ref|ZP_03444031.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795113|ref|YP_003079950.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           TW14359]
 gi|261228174|ref|ZP_05942455.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255030|ref|ZP_05947563.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284538|ref|YP_003501356.1| Cold-shock DEAD-box protein A [Escherichia coli O55:H7 str. CB9615]
 gi|331684811|ref|ZP_08385403.1| ATP-dependent RNA helicase DeaD [Escherichia coli H299]
 gi|32171494|sp|Q8XA87|DEAD_ECO57 RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
 gi|187770756|gb|EDU34600.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016396|gb|EDU54518.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001016|gb|EDU70002.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358785|gb|EDU77204.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361392|gb|EDU79811.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367581|gb|EDU85997.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374042|gb|EDU92458.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC869]
 gi|189379846|gb|EDU98262.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC508]
 gi|208725932|gb|EDZ75533.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733296|gb|EDZ81983.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738407|gb|EDZ86089.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161697|gb|ACI39130.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4115]
 gi|217320315|gb|EEC28740.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594513|gb|ACT73874.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|290764411|gb|ADD58372.1| Cold-shock DEAD-box protein A [Escherichia coli O55:H7 str. CB9615]
 gi|320189516|gb|EFW64175.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str.
           EC1212]
 gi|320640234|gb|EFX09806.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           G5101]
 gi|320645531|gb|EFX14540.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H- str.
           493-89]
 gi|320650841|gb|EFX19298.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H- str. H
           2687]
 gi|320656222|gb|EFX24134.1| ATP-dependent RNA helicase DeaD [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661912|gb|EFX29320.1| ATP-dependent RNA helicase DeaD [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666747|gb|EFX33726.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326337864|gb|EGD61698.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str. 1125]
 gi|326347433|gb|EGD71158.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str. 1044]
 gi|331078426|gb|EGI49632.1| ATP-dependent RNA helicase DeaD [Escherichia coli H299]
          Length = 629

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 TAE---GEELDLETLAAALLKMA 432


>gi|327461635|gb|EGF07966.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1]
          Length = 523

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 131/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          ++      QA+I+AP 
Sbjct: 25  SPIQEQTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLNQIETLILDEADEMLNMGFLEDIES-------IISRVPEERQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            K       ++P    I       E++++  + + E +K   +   ++ ++         
Sbjct: 188 IKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGR 247

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|325697116|gb|EGD39003.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160]
 gi|327473355|gb|EGF18775.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408]
 gi|332362751|gb|EGJ40547.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49]
          Length = 523

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 131/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          ++      QA+I+AP 
Sbjct: 25  SPIQEQTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLNQIETLILDEADEMLNMGFLEDIES-------IISRVPEERQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            K       ++P    I       E++++  + + E +K   +   ++ ++         
Sbjct: 188 IKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGR 247

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|312883442|ref|ZP_07743168.1| ATP-dependent RNA helicase DbpA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369058|gb|EFP96584.1| ATP-dependent RNA helicase DbpA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 458

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 81/420 (19%), Positives = 145/420 (34%), Gaps = 54/420 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ FS  T  Q+ A+  IL+          I QG  GSGKT+   + +   +      
Sbjct: 18  LDSLGFSQMTAIQQQALPAILEGKDV------IGQGKTGSGKTVTFSLGILNNLNVERFR 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++ P   LA Q  + I+   +    + V  + G MP   +  +LE      AHII+
Sbjct: 72  IQTLVLCPTRELADQVAKEIRTLARGRHNVKVLTLCGGMPMGPQIGSLEH----GAHIIV 127

Query: 381 GTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D      IQ+  +   ++DE  R                  L+       +TL
Sbjct: 128 GTPGRILDHMSKGRIQFSDINTFVLDEADRMLDMGFEDAI------DTLVSELPINRQTL 181

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I  + EK    +         +    + +    V     K   +   +   
Sbjct: 182 LFSATYPKHIEVLAEK-VTSEAQMIKTQTHDEKTTIKQFFYEVDGTEAKDDALETLLLHY 240

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           K        N +  V+  +   +    ++A +HG M   ++E  + +F N +  +L+AT 
Sbjct: 241 KPESSVVFCNTKKEVQDVSDELDRLGFNVAELHGDMEQRERERALITFANKSTSILVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV +   +            +H++ GR GR          +    S        
Sbjct: 301 VAARGLDVDNLDAVFNFELSRDPEVHVHRI-GRTGRAGAEGLAFSFFTARESYRVARIEE 359

Query: 610 VL-----------KNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLIAQP 649
            +           K  E  F      ++           G+ILG   KQ+ +    I + 
Sbjct: 360 YMDIECLPSQLPQKLIERPFYPKMATIQILGGKKQKVRAGDILGALTKQANIAASKIGKI 419


>gi|307720922|ref|YP_003892062.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979015|gb|ADN09050.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 417

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/356 (18%), Positives = 124/356 (34%), Gaps = 27/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q+ AI  IL+      +   +     G+GKT    + +   +            +
Sbjct: 27  TPTPIQQKAIPVILE------KKDILAGAQTGTGKTAGFTLPLLELLSREKPTKQKHKIR 80

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  E +  Y ++      +I G +    +   L +       I+I T 
Sbjct: 81  ALILTPTRELAAQVGESVALYGKHLPFKSTVIFGGVKINPQISNLRK----GTDIVIATP 136

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D I    + L  V E        R+           +L       +TL+ ++    
Sbjct: 137 GRLLDHISQKTIDLREV-EYLILDEADRMLDMGFINDIKKILNIIPNQRQTLLFSATYSD 195

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---- 499
            I K++ +     P    +   N   E++++    + + +K   +   I E K       
Sbjct: 196 AIKKLSNQFLN-APKLIEVARANTSSEIVKQAVYHVDKTRKRELLTHLINEGKWQQVLVF 254

Query: 500 --FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +    R +   E    +   IHG  S   +   +  FK G  ++L+AT +   GID+
Sbjct: 255 TRTKHGANRLSGQLESDGITAVAIHGNKSQNARTKALADFKKGDVRVLVATDIAARGIDI 314

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
                +I     +     +H++ GR GR       I L      +       ++K 
Sbjct: 315 DQLPHVINYELPNVSEDYVHRI-GRTGRAGNGGEAISLVCVDEDEFLQNIEKLIKK 369


>gi|303257750|ref|ZP_07343762.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium
           1_1_47]
 gi|331001188|ref|ZP_08324815.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
 gi|302859720|gb|EFL82799.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium
           1_1_47]
 gi|329569120|gb|EGG50912.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
          Length = 458

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 131/367 (35%), Gaps = 40/367 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
            PT  Q  AI  +LQ          +     G+GKT    + +   +             
Sbjct: 27  KPTAIQCKAIPVVLQGRDV------MGAAQTGTGKTASFGLPVLQKLLPLANTSTSPARH 80

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             + +I++P   LA Q  E +  Y  +T I + ++ G +    + +AL +       I+I
Sbjct: 81  PVRVLILSPTRELADQTAEALSNYAADTPIRIGVVYGGVDIKPQAEALRK----GVEILI 136

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D ++           +IL   D     G        L         L+ +AT 
Sbjct: 137 ATPGRLLDHLEQRNTNLNQSGIVILDEADRMLDMGFLPDISRILNALPKKRQNLMFSATF 196

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L    L D  + ++  + A    IK  +  +N + +    ++++ + G+     
Sbjct: 197 SPEIKKLAGNFLTDPVVIEVARQNATAATIKQEVFSVNELQKTDALVELLKTRGEDPDG- 255

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              ++     N +    R     E    +   IHG  +  ++  ++  FK+GT  +++AT
Sbjct: 256 -KPLQTIVFVNAKLTARRLARELEKCGFNADAIHGDKTQEERLKLLKDFKDGTLNIMVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +  ++I  +        +H++ GR GR       ++L             
Sbjct: 315 DVAARGLDIAELPLVINYDVPFVPEDYVHRI-GRTGRAGSSGLALMLVTDKD----KKSF 369

Query: 609 SVLKNTE 615
             ++   
Sbjct: 370 DAIRKLT 376


>gi|293406774|ref|ZP_06650700.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1412]
 gi|298382514|ref|ZP_06992111.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1302]
 gi|300897926|ref|ZP_07116305.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 198-1]
 gi|291426780|gb|EFE99812.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1412]
 gi|298277654|gb|EFI19170.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1302]
 gi|300358356|gb|EFJ74226.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 198-1]
          Length = 650

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 38  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 91

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 92  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 147

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 263

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 264 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 315

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 316 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 374

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 375 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 429

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 430 TAE---GEELDLETLAAALLKMA 449


>gi|261758239|ref|ZP_06001948.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|261738223|gb|EEY26219.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
          Length = 462

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 129/347 (37%), Gaps = 39/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            P   Q  AI   L+          +     GSGKT    + +   +            +
Sbjct: 36  EPKPIQTQAIPSQLEGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTAR 89

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  + I+  +++  I   ++ G + +  + K +         ++I T 
Sbjct: 90  ALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATP 145

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPR 433
               D +        Q   L+L   D     G    +K   KAT       L +AT    
Sbjct: 146 GRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKE 205

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L      D  ++   P G     I  V+ P+   ++      ++     ++  +  +
Sbjct: 206 IASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTR 265

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +   ++  R          E     +A IHG  S   ++  ++ F++GT ++L+AT + 
Sbjct: 266 TKHGADAVVRH--------LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIA 317

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             GIDV  +S ++  +        +H++ GR GR     + I LY P
Sbjct: 318 ARGIDVPGSSHVVNYDPPDEPETYVHRI-GRTGRNGASGASITLYDP 363


>gi|258622228|ref|ZP_05717254.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM573]
 gi|258585552|gb|EEW10275.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM573]
          Length = 434

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 64/337 (18%), Positives = 126/337 (37%), Gaps = 30/337 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 44  QPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 97

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +        +    + G + +  ++ AL        +I++ T     D 
Sbjct: 98  TRELAMQVSEVLTHVGTPLGLNTLCLCGGVDKTEQQNALAE----NPNILVATTGRLFDL 153

Query: 390 IQ----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            Q      ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 154 TQSGLSLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTASVRQTVMCSATFSDD 206

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF----- 500
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +         
Sbjct: 207 LKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 266

Query: 501 -RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   +               +HG  S  ++E+ +  FKNGT ++LIAT ++  GI +  
Sbjct: 267 AKENADGLTKKLNKAGIVATALHGDKSQAEREAALAEFKNGTTQVLIATDLLARGIHIEQ 326

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             ++I           +H++ GR  R  +    + L 
Sbjct: 327 LPVVINFELPMHAETYVHRV-GRTARAGQQGIALSLV 362


>gi|209758404|gb|ACI77514.1| inducible ATP-independent RNA helicase [Escherichia coli]
          Length = 646

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 162/439 (36%), Gaps = 47/439 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 38  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 91

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 92  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 147

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + +    +I    A R  I      +  + +    ++ + +E   A  I
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVATRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +LIAT
Sbjct: 268 FVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDILIAT 319

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 320 DVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIE 378

Query: 609 SVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             +K T     I E +L   +   +  +         +   +  + + +LL   +  A+ 
Sbjct: 379 RTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAE- 432

Query: 666 ILTQDPDLTSVRGQSIRIL 684
              ++ DL ++    +++ 
Sbjct: 433 --GEELDLETLAAALLKMA 449


>gi|154684961|ref|YP_001420122.1| YdbR [Bacillus amyloliquefaciens FZB42]
 gi|154350812|gb|ABS72891.1| YdbR [Bacillus amyloliquefaciens FZB42]
          Length = 511

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 157/442 (35%), Gaps = 56/442 (12%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           +  + F   T  Q   I   L +         I Q   G+GKT    I +   +      
Sbjct: 35  INRMGFEEATPIQAQTIPLGLLNKDV------IGQAQTGTGKTAAFGIPLVEKMNPESPN 88

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++AP   LA Q  E + K  Q+ +  V  I G      + +AL++      HII+G
Sbjct: 89  IQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKK----NPHIIVG 144

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-- 429
           T     D I    + L  V        DE    G    +   L+   +    LL +AT  
Sbjct: 145 TPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSDHQTLLFSATMP 204

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            PI R +    + + +  K+  K      I+   + +    +     +++  +  +   +
Sbjct: 205 APIKR-IAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIV 263

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +       R V E   +L+    ++  I HG ++   +   +  FK G  ++L+AT
Sbjct: 264 FGRTK-------RRVDELAEALNLRGYAAEGI-HGDLTQAKRMVALRKFKEGAIEVLVAT 315

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+   + +   +      + +H++ GR GR  +    +    P          
Sbjct: 316 DVAARGLDISGVTHVYNFDVPQDPESYVHRI-GRTGRAGKTGMAMTFITPREKSMLRAIE 374

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPE--------LHDSLLE--- 657
              K   D       D        + G +Q  + +   A  E            LLE   
Sbjct: 375 QTTKRKMDRMKEPTLD------EALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDHD 428

Query: 658 --IARKDAKHILTQDPDLTSVR 677
                  A  + T++PD T VR
Sbjct: 429 AVTVVAAAIKMATKEPDSTPVR 450


>gi|145637208|ref|ZP_01792870.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
 gi|145269653|gb|EDK09594.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
          Length = 613

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 133/364 (36%), Gaps = 36/364 (9%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+S I  +L           +     GSGKT    + + A +   E   
Sbjct: 21  SDLGFETPSPIQQSCIPHLLNG------NDVLGMAQTGSGKTAAFALPLLAQIDPSEKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  +++ +      +  + G      R     R     A +I+G
Sbjct: 75  QMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGG----QRYDIQLRALKQGAQVIVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 131 TPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMP 190

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I      ++ + +    L+ +  E   A  I 
Sbjct: 191 EPIRRITKRFMNDPKEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +NG+  +++AT 
Sbjct: 251 ARTKTGTLD--------ITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S+++  +      + +H++ GR GR       +L   P   +       
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEH 361

Query: 610 VLKN 613
           ++K 
Sbjct: 362 LMKK 365


>gi|117625458|ref|YP_858781.1| ATP-dependent RNA helicase DeaD [Escherichia coli APEC O1]
 gi|209920639|ref|YP_002294723.1| ATP-dependent RNA helicase DeaD [Escherichia coli SE11]
 gi|227887886|ref|ZP_04005691.1| ATP-dependent RNA helicase DeaD [Escherichia coli 83972]
 gi|300817586|ref|ZP_07097802.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 107-1]
 gi|300904348|ref|ZP_07122201.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 84-1]
 gi|300918917|ref|ZP_07135476.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 115-1]
 gi|300926099|ref|ZP_07141917.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 182-1]
 gi|300948811|ref|ZP_07162879.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 116-1]
 gi|300955748|ref|ZP_07168093.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 175-1]
 gi|300977829|ref|ZP_07174069.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 200-1]
 gi|300990761|ref|ZP_07179333.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 45-1]
 gi|301301782|ref|ZP_07207916.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 124-1]
 gi|301326415|ref|ZP_07219769.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 78-1]
 gi|301644873|ref|ZP_07244845.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 146-1]
 gi|606102|gb|AAA57965.1| two frameshifts relative to ECODEAD [Escherichia coli str. K-12
           substr. MG1655]
 gi|30042761|gb|AAP18484.1| inducible ATP-independent RNA helicase [Shigella flexneri 2a str.
           2457T]
 gi|56383827|gb|AAN44670.2| inducible ATP-independent RNA helicase [Shigella flexneri 2a str.
           301]
 gi|73857176|gb|AAZ89883.1| inducible ATP-independent RNA helicase [Shigella sonnei Ss046]
 gi|81247009|gb|ABB67717.1| inducible ATP-independent RNA helicase [Shigella boydii Sb227]
 gi|115514582|gb|ABJ02657.1| inducible ATP-independent RNA helicase [Escherichia coli APEC O1]
 gi|209913898|dbj|BAG78972.1| RNA helicase [Escherichia coli SE11]
 gi|227835282|gb|EEJ45748.1| ATP-dependent RNA helicase DeaD [Escherichia coli 83972]
 gi|281180206|dbj|BAI56536.1| RNA helicase [Escherichia coli SE15]
 gi|300308206|gb|EFJ62726.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 200-1]
 gi|300317381|gb|EFJ67165.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 175-1]
 gi|300403699|gb|EFJ87237.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 84-1]
 gi|300407069|gb|EFJ90607.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 45-1]
 gi|300413943|gb|EFJ97253.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 115-1]
 gi|300417864|gb|EFK01175.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 182-1]
 gi|300451700|gb|EFK15320.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 116-1]
 gi|300529884|gb|EFK50946.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 107-1]
 gi|300842763|gb|EFK70523.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 124-1]
 gi|300846904|gb|EFK74664.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 78-1]
 gi|301076818|gb|EFK91624.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 146-1]
 gi|315257088|gb|EFU37056.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 85-1]
 gi|315288936|gb|EFU48334.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 110-3]
 gi|315294907|gb|EFU54246.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 153-1]
 gi|315297886|gb|EFU57156.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 16-3]
 gi|324008761|gb|EGB77980.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 57-2]
 gi|324012112|gb|EGB81331.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 60-1]
 gi|324018314|gb|EGB87533.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 117-3]
          Length = 646

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 38  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 91

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 92  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 147

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 263

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 264 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 315

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 316 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 374

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 375 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 429

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 430 TAE---GEELDLETLAAALLKMA 449


>gi|254524903|ref|ZP_05136958.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp.
           SKA14]
 gi|219722494|gb|EED41019.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp.
           SKA14]
          Length = 473

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 64/372 (17%), Positives = 133/372 (35%), Gaps = 38/372 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----------EAGG 322
           PT  Q+ AI   L           +     G+GKT    + +   +              
Sbjct: 24  PTPIQQQAIPLALAGRD------LLAGAQTGTGKTAAFGLPLLQHLGTASQEVRSGPRKP 77

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q ++ ++ Y++  +I    I G +   ++   L R       +++  
Sbjct: 78  RALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLDILRR----GVDLLVAC 133

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D ++   + L  ++        + L +    +   +L        +TL+ ++  +
Sbjct: 134 PGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQNRQTLLFSATFE 193

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
            +I ++      R P +  + P N + E I      +  G+K   +   + +        
Sbjct: 194 DNIRQLA-LEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLHLLAQDSREQTLV 252

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   ++  +  E      A IHG  S   +   +  FK G   +L+AT +   GID
Sbjct: 253 FARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVLVATDIAARGID 312

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           + +   +I  +        +H++ GR GR       I L        +   + +L+    
Sbjct: 313 INELPKVINFDLPMVAEDYVHRI-GRTGRNGATGQAISLV-------AQDEVKLLRAIT- 363

Query: 617 GFLIAEEDLKQR 628
              +   D+  R
Sbjct: 364 --RLLGRDMDIR 373


>gi|145635138|ref|ZP_01790843.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|145267559|gb|EDK07558.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
          Length = 613

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 85/437 (19%), Positives = 158/437 (36%), Gaps = 49/437 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+S I  +L           +     GSGKT    + + A +   E   
Sbjct: 21  SDLGFETPSPIQQSCIPHLLNG------NDVLGMAQTGSGKTAAFALPLLAQIDPSEKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  + + +      +  + G      R     R     A +++G
Sbjct: 75  QMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGG----QRYDIQLRALKQGAQVVVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 131 TPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMP 190

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I      ++ + +    L+ +  E   A  I 
Sbjct: 191 EPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +NG+  +++AT 
Sbjct: 251 ARTKTGTLD--------ITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S+++  +      + +H++ GR GR       +L   P   +       
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEH 361

Query: 610 VLKNTEDGFLIAEEDL--KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           ++K   +   +    +  + R++  +  I +         Q E HD  LE  R   + + 
Sbjct: 362 LMKKGINEVELPNHLVLQEYRRKKFVAKITK---------QLEHHD--LEQYRSLLEDLF 410

Query: 668 TQDPDLTSVRGQSIRIL 684
           T D D   +    + +L
Sbjct: 411 TADQDQEDIAAAMLMLL 427


>gi|296178353|dbj|BAJ07808.1| putative vasa protein [Oxycomanthus japonicus]
          Length = 851

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 134/371 (36%), Gaps = 47/371 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ + + +   G         
Sbjct: 436 KPTPVQKHGIPIIAAGRD------LMACAQTGSGKTAAFLLPIISGILRDGVQSGSLSFV 489

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q +I++P   LA Q +   +K++ NT +   +I G     ++   + +      HI+
Sbjct: 490 QTPQCIIVSPTRELAIQIFNEARKFSHNTILRPVVIYGGTSVQYQTNDVGK----GCHIL 545

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGV---QQRL---KLTQKATAPHVLL 425
           +GT    QD I   K        L+L   D     G     +RL       K      L+
Sbjct: 546 VGTPGRLQDFIDRQKISVEKCNYLVLDEADRMLDMGFGPAMERLVNNPNMPKKGDRQTLM 605

Query: 426 MTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     +      L +     I         ++  +I +++  +  ++L  +L +  
Sbjct: 606 FSATFPDEVQKRASEYLNNYLFLTIGRIGGATPDVEQRVIEVDQFQKK-DKLIEILHDSP 664

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +       +E K+ ++F        SL          IHG     ++E  +  FK G   
Sbjct: 665 EDDKTLVFVETKRSADF------LASLLSQSGFPTTSIHGDRMQKEREEALRDFKTGRAP 718

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +++AT+V   G+D+     +I  +        +H++ GR GR   +      +    + N
Sbjct: 719 VMVATSVAARGLDIPKVKHVINYDLPEDISEYVHRI-GRTGRVGNLGKATSFFDSSKNGN 777

Query: 604 -SYTRLSVLKN 613
            +   +  L +
Sbjct: 778 VARALIKTLAD 788


>gi|78777961|ref|YP_394276.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78498501|gb|ABB45041.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 540

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 140/371 (37%), Gaps = 38/371 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAPI 330
           P+  Q +AI  IL           + Q   G+GKT    +     +    G   +++ P 
Sbjct: 37  PSPIQAAAIPFILAGRD------IVGQAHTGTGKTAAFGLPALNNINPNDGVGILVITPT 90

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  + + KY +N       + G      +   ++R     A +++ T     D +
Sbjct: 91  RELATQVSDELFKYGRNIGARTVTVYGGSSYNRQIDLIQR----GASVVVATPGRLLDIL 146

Query: 391 QYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   L        +L   DE    G         +   +    LL +AT P P + L   
Sbjct: 147 KKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNRQTLLFSATMPKPIKLLAER 206

Query: 439 SLGDIDISKITEKPAGRKPIKT--VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            L + +   IT+       I     +I  +  D+ I  ++++ +E  +   +  +     
Sbjct: 207 ILDNPEFISITKGETTNTDINQEYYVIEESERDDAI--IRLMDAEACQKSIVFCRT---- 260

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +S V+R +++          +HG M    +E+V+  FKN   K+L+AT V   GI 
Sbjct: 261 ----KSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNNGVKVLVATDVAARGIH 316

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-PLSKNSYTRLSVLKNTE 615
           V + S +   +      + +H++ GR GR       I L  P    +    +  V     
Sbjct: 317 VDNISHVFNYHIPFDPESYVHRI-GRTGRAGTKGKAITLLTPLEFKELQRIKTKVGTTMT 375

Query: 616 DGFLIAEEDLK 626
             F+ ++ DL+
Sbjct: 376 HAFVPSKNDLR 386


>gi|332998804|gb|EGK18400.1| cold-shock DEAD box protein A [Shigella flexneri VA-6]
          Length = 629

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 TAE---GEELDLETLAAALLKMA 432


>gi|326493772|dbj|BAJ85348.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 130/348 (37%), Gaps = 43/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 63  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 116

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 117 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS----GVHVVVGTPGRVFD 172

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L   
Sbjct: 173 MLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEAL--- 229

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKKE 497
                   +IT K    KP++ ++       E I++  V +  E  K   +C   E    
Sbjct: 230 --------EITRKFMN-KPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAI 280

Query: 498 S------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +      N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++
Sbjct: 281 TQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMRQFRSGSSRVLITTDLL 340

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             GIDV   S++I  +        LH++ GR GR       I      
Sbjct: 341 ARGIDVQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRE 387


>gi|315617245|gb|EFU97854.1| cold-shock DEAD box protein A [Escherichia coli 3431]
          Length = 632

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 TAE---GEELDLETLAAALLKMA 432


>gi|241760372|ref|ZP_04758467.1| dead/deah box helicase [Neisseria flavescens SK114]
 gi|241319250|gb|EER55728.1| dead/deah box helicase [Neisseria flavescens SK114]
          Length = 487

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 128/366 (34%), Gaps = 46/366 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q +AI   L           +     G+GKT   ++     ++    +        
Sbjct: 49  PTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLELLKRYATSSTSPAMHP 102

Query: 325 ---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++ P   LA Q  + ++ Y +N  +   ++ G +    +   L         I++ 
Sbjct: 103 VRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTADLRAGCE----IVVA 158

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-- 429
           T     D ++           ++L   D     G     R  +         LL +AT  
Sbjct: 159 TVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATFS 218

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P  R L    +   ++ ++  +      ++  II ++ + +     ++++        + 
Sbjct: 219 PPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRSLLERLIVDLHMNQVIVF 278

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + ++  +   R +V R          +   IHG  S   +   +++FK GT ++L+AT 
Sbjct: 279 CKTKQSVDQVTRDLVRR--------NIAAQSIHGDKSQQSRLETLNAFKEGTLRVLVATD 330

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +   +I           +H++ GR GR       I L    + K       
Sbjct: 331 VAARGLDIAELPFVINYELPTQPEDYVHRI-GRTGRAGADGVAISL----MDKTEQKMFE 385

Query: 610 VLKNTE 615
            +K   
Sbjct: 386 AIKELT 391


>gi|225016981|ref|ZP_03706173.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
           DSM 5476]
 gi|224950247|gb|EEG31456.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
           DSM 5476]
          Length = 563

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 84/409 (20%), Positives = 151/409 (36%), Gaps = 48/409 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----AGGQAVIMA 328
           T  Q  +I  I            I +   G+GKT+   +     ++        Q +I+ 
Sbjct: 28  TDIQAQSIPLIRAGYDV------IGRSQTGTGKTVAFGVPAVELIDTEELRNKTQVLILC 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    I+K  +    +    I G  P   +   L+R     A+I++GT     
Sbjct: 82  PTRELAVQACSEIEKIAKYKRGVRAVDIYGGAPMDRQIMRLKR----GANIVVGTPGRVM 137

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVL 437
           D ++   L L  +        DE    G ++ +   L Q       +L +AT  P  L L
Sbjct: 138 DHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTPDERQTILFSATMPPAILAL 197

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           T     D            P    I       + IE+    +  G+K   +   ++    
Sbjct: 198 TKQYQKD------------PQLIEINRKQVTLDNIEQQFYEVPMGRKMDALGIILQYHDP 245

Query: 498 ------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N + +V+   +  +    S   +HG M    +  VMDSFK G  K+L+AT V 
Sbjct: 246 ALSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKILVATDVA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV +   +I  +        +H++ GR GR  +    + +       +    +  +
Sbjct: 306 ARGIDVNNVDYVINYDVPQNQEYYVHRI-GRTGRAGKEGKAVTICSGRRQVDELYHIVRM 364

Query: 612 KNTE--DGFLIAEEDLKQR-KEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             +      L + +D+++R  EG +  ++Q       +   E+ + L++
Sbjct: 365 TKSTIKRESLPSGQDIERRSNEGVVARMEQKLAAAEELYYKEVAEELVQ 413


>gi|209518298|ref|ZP_03267123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209501217|gb|EEA01248.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 443

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 64/340 (18%), Positives = 121/340 (35%), Gaps = 28/340 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----AGG---- 322
           SPT  Q  AI  +L           +     G+GKT    + +   +      AGG    
Sbjct: 23  SPTPIQTQAIPAVLDG------GDLLAGAQTGTGKTAGFTLPILQRLNSMPPAAGGKRVV 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E ++ Y +  ++   ++ G +    +  AL+R       I++ T
Sbjct: 77  RALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALKR----GVDIVVAT 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D +Q   + L  + E        R+           +L    P  + L+ ++   
Sbjct: 133 PGRLLDHMQQKTIDLSHL-EILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFS 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
            +I  + +      P    +   N   E + +    +   +K   +   I +        
Sbjct: 192 DEIKALADSLLD-SPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIRQHNWFQVLV 250

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +    R          S   IHG  S   +   +  FK+GT ++L+AT +   GID
Sbjct: 251 FTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAARGID 310

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +     ++  +  +     +H++ GR GR       + L 
Sbjct: 311 IDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLV 349


>gi|118574850|gb|ABL07003.1| DH [Medicago sativa]
          Length = 406

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 133/371 (35%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+ A+  I+Q          I Q   G+GKT +  + +   V+      QA+I++
Sbjct: 55  KPSAIQQRAVAPIIQGRDV------IAQAQSGTGKTSMIALTVCQVVDTSVREVQALIVS 108

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        I      G        + LE       H++ GT     D
Sbjct: 109 PTRELASQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEH----GVHVVSGTPGRVCD 164

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G + ++            V L++AT     L +T
Sbjct: 165 MIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEMT 224

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           +    D  +I  K      + IK   + + R +   + L  +       +A   C     
Sbjct: 225 NKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT--- 281

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+       +   +++ +HG M   +++++M  F+ GT ++LI T V   G
Sbjct: 282 ------KRKVDWLTEKMRNNNFTVSSMHGDMPQRERDAIMSEFRVGTTRVLITTDVWARG 335

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S++I  +  +     +H++ GR GR       I        K            
Sbjct: 336 LDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ 394

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 395 IDEMPMNVADL 405


>gi|126173490|ref|YP_001049639.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125996695|gb|ABN60770.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 411

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 128/358 (35%), Gaps = 43/358 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           L ++ F  PT  Q  AI  IL       +   +     G+GKT    + +   + A    
Sbjct: 16  LASLGFESPTPIQLEAIPAILA------KRDVMAGAQTGTGKTAAFALPILHHLLALSPL 69

Query: 321 -------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                    +A+++ P   LA Q  +   KY + T I V I  G +    +        +
Sbjct: 70  QELTAVKPIRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAV----FN 125

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHV 423
               ++I T     D ++   L L  +        D     G    ++  L Q  +    
Sbjct: 126 AGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQT 185

Query: 424 LLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           LL +AT       L  T L D  + ++ ++      I+ V+  ++   +      +V S+
Sbjct: 186 LLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDADRKTELVSHLVRSK 245

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 I  +         +  V++               HG +S   +E V+  FK G 
Sbjct: 246 NWHQVLIFSRT--------KQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGK 297

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            ++L+AT V   G+D+V+   +I           +H++ GR GR       I L+   
Sbjct: 298 IQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRI-GRTGRAGSAGLAITLFSQE 354


>gi|89109927|ref|AP_003707.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111550|ref|NP_417631.2| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|110643403|ref|YP_671133.1| ATP-dependent RNA helicase DeaD [Escherichia coli 536]
 gi|161485815|ref|NP_708963.3| ATP-dependent RNA helicase DeaD [Shigella flexneri 2a str. 301]
 gi|161486111|ref|NP_755783.2| ATP-dependent RNA helicase DeaD [Escherichia coli CFT073]
 gi|161486429|ref|NP_838673.2| ATP-dependent RNA helicase DeaD [Shigella flexneri 2a str. 2457T]
 gi|161984848|ref|YP_409545.2| ATP-dependent RNA helicase DeaD [Shigella boydii Sb227]
 gi|161986443|ref|YP_312118.2| ATP-dependent RNA helicase DeaD [Shigella sonnei Ss046]
 gi|170018586|ref|YP_001723540.1| ATP-dependent RNA helicase DeaD [Escherichia coli ATCC 8739]
 gi|170082699|ref|YP_001732019.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170684314|ref|YP_001745436.1| ATP-dependent RNA helicase DeaD [Escherichia coli SMS-3-5]
 gi|191172194|ref|ZP_03033737.1| cold-shock DEAD box protein A [Escherichia coli F11]
 gi|193062213|ref|ZP_03043309.1| cold-shock DEAD box protein A [Escherichia coli E22]
 gi|194427708|ref|ZP_03060255.1| cold-shock DEAD box protein A [Escherichia coli B171]
 gi|194438758|ref|ZP_03070844.1| cold-shock DEAD box protein A [Escherichia coli 101-1]
 gi|215488480|ref|YP_002330911.1| ATP-dependent RNA helicase DeaD [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218550447|ref|YP_002384238.1| ATP-dependent RNA helicase DeaD [Escherichia fergusonii ATCC 35469]
 gi|218560234|ref|YP_002393147.1| ATP-dependent RNA helicase DeaD [Escherichia coli S88]
 gi|218691454|ref|YP_002399666.1| ATP-dependent RNA helicase DeaD [Escherichia coli ED1a]
 gi|218696869|ref|YP_002404536.1| ATP-dependent RNA helicase DeaD [Escherichia coli 55989]
 gi|238902266|ref|YP_002928062.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|253772002|ref|YP_003034833.1| ATP-dependent RNA helicase DeaD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163106|ref|YP_003046214.1| ATP-dependent RNA helicase DeaD [Escherichia coli B str. REL606]
 gi|256018918|ref|ZP_05432783.1| ATP-dependent RNA helicase DeaD [Shigella sp. D9]
 gi|256024262|ref|ZP_05438127.1| ATP-dependent RNA helicase DeaD [Escherichia sp. 4_1_40B]
 gi|260845977|ref|YP_003223755.1| ATP-dependent RNA helicase DeaD [Escherichia coli O103:H2 str.
           12009]
 gi|293416596|ref|ZP_06659235.1| ATP-dependent RNA helicase DeaD [Escherichia coli B185]
 gi|301025993|ref|ZP_07189475.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 196-1]
 gi|306816494|ref|ZP_07450626.1| ATP-dependent RNA helicase DeaD [Escherichia coli NC101]
 gi|307139849|ref|ZP_07499205.1| ATP-dependent RNA helicase DeaD [Escherichia coli H736]
 gi|312968499|ref|ZP_07782708.1| cold-shock DEAD box protein A [Escherichia coli 2362-75]
 gi|312972567|ref|ZP_07786740.1| cold-shock DEAD box protein A [Escherichia coli 1827-70]
 gi|331659451|ref|ZP_08360393.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA206]
 gi|331664776|ref|ZP_08365681.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA143]
 gi|331669991|ref|ZP_08370836.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA271]
 gi|71154182|sp|P0A9P7|DEAD_ECOL6 RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
 gi|71154193|sp|P0A9P6|DEAD_ECOLI RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD; AltName:
           Full=Translation factor W2
 gi|71154222|sp|P0A9P8|DEAD_SHIFL RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
 gi|85675958|dbj|BAE77208.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr.
           W3110]
 gi|87082221|gb|AAC76196.2| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|110344995|gb|ABG71232.1| probable ATP-dependent RNA helicase DeaD [Escherichia coli 536]
 gi|169753514|gb|ACA76213.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169890534|gb|ACB04241.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170522032|gb|ACB20210.1| cold-shock DEAD box protein A [Escherichia coli SMS-3-5]
 gi|190907504|gb|EDV67100.1| cold-shock DEAD box protein A [Escherichia coli F11]
 gi|192932433|gb|EDV85031.1| cold-shock DEAD box protein A [Escherichia coli E22]
 gi|194414216|gb|EDX30491.1| cold-shock DEAD box protein A [Escherichia coli B171]
 gi|194422230|gb|EDX38231.1| cold-shock DEAD box protein A [Escherichia coli 101-1]
 gi|215266552|emb|CAS10991.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|218353601|emb|CAU99787.1| ATP-dependent RNA helicase [Escherichia coli 55989]
 gi|218357988|emb|CAQ90634.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469]
 gi|218367003|emb|CAR04774.1| ATP-dependent RNA helicase [Escherichia coli S88]
 gi|218429018|emb|CAR09825.1| ATP-dependent RNA helicase [Escherichia coli ED1a]
 gi|238860045|gb|ACR62043.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|242378707|emb|CAQ33497.1| DeaD, DEAD-box RNA helicase [Escherichia coli BL21(DE3)]
 gi|253323046|gb|ACT27648.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975007|gb|ACT40678.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606]
 gi|253979163|gb|ACT44833.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|257761124|dbj|BAI32621.1| ATP-dependent RNA helicase DeaD [Escherichia coli O103:H2 str.
           12009]
 gi|260447809|gb|ACX38231.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|291431952|gb|EFF04935.1| ATP-dependent RNA helicase DeaD [Escherichia coli B185]
 gi|299879888|gb|EFI88099.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 196-1]
 gi|305850059|gb|EFM50518.1| ATP-dependent RNA helicase DeaD [Escherichia coli NC101]
 gi|307555258|gb|ADN48033.1| cold-shock DeaD box ATP-dependent RNA helicase [Escherichia coli
           ABU 83972]
 gi|307625237|gb|ADN69541.1| ATP-dependent RNA helicase DeaD [Escherichia coli UM146]
 gi|309703590|emb|CBJ02930.1| ATP-dependent RNA helicase (DEAD-box protein) [Escherichia coli
           ETEC H10407]
 gi|310332509|gb|EFP99722.1| cold-shock DEAD box protein A [Escherichia coli 1827-70]
 gi|312286717|gb|EFR14628.1| cold-shock DEAD box protein A [Escherichia coli 2362-75]
 gi|313648596|gb|EFS13038.1| cold-shock DEAD box protein A [Shigella flexneri 2a str. 2457T]
 gi|315137750|dbj|BAJ44909.1| ATP-dependent RNA helicase DeaD [Escherichia coli DH1]
 gi|320181438|gb|EFW56356.1| Cold-shock DEAD-box protein A [Shigella boydii ATCC 9905]
 gi|320194648|gb|EFW69278.1| Cold-shock DEAD-box protein A [Escherichia coli WV_060327]
 gi|323162856|gb|EFZ48691.1| cold-shock DEAD box protein A [Escherichia coli E128010]
 gi|323165120|gb|EFZ50910.1| cold-shock DEAD box protein A [Shigella sonnei 53G]
 gi|323173578|gb|EFZ59207.1| cold-shock DEAD box protein A [Escherichia coli LT-68]
 gi|323189215|gb|EFZ74499.1| cold-shock DEAD box protein A [Escherichia coli RN587/1]
 gi|323936142|gb|EGB32436.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323941736|gb|EGB37915.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323951318|gb|EGB47193.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323957689|gb|EGB53403.1| DEAD/DEAH box helicase [Escherichia coli H263]
 gi|323961066|gb|EGB56681.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323966344|gb|EGB61778.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|323970273|gb|EGB65544.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|323979119|gb|EGB74197.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
 gi|324115232|gb|EGC09196.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
 gi|324119529|gb|EGC13411.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|325498745|gb|EGC96604.1| ATP-dependent RNA helicase [Escherichia fergusonii ECD227]
 gi|327251943|gb|EGE63629.1| cold-shock DEAD box protein A [Escherichia coli STEC_7v]
 gi|330909220|gb|EGH37734.1| cold-shock DEAD-box protein A [Escherichia coli AA86]
 gi|331054033|gb|EGI26062.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA206]
 gi|331058024|gb|EGI30006.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA143]
 gi|331062904|gb|EGI34818.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA271]
 gi|332086106|gb|EGI91268.1| cold-shock DEAD box protein A [Shigella boydii 5216-82]
 gi|332090717|gb|EGI95811.1| cold-shock DEAD box protein A [Shigella boydii 3594-74]
 gi|332752322|gb|EGJ82712.1| cold-shock DEAD box protein A [Shigella flexneri 4343-70]
 gi|332752849|gb|EGJ83234.1| cold-shock DEAD box protein A [Shigella flexneri K-671]
 gi|332754390|gb|EGJ84756.1| cold-shock DEAD box protein A [Shigella flexneri 2747-71]
 gi|332765159|gb|EGJ95386.1| csdA, DEAD-box RNA helicase [Shigella flexneri 2930-71]
 gi|332999241|gb|EGK18827.1| cold-shock DEAD box protein A [Shigella flexneri K-272]
 gi|333000407|gb|EGK19990.1| cold-shock DEAD box protein A [Shigella flexneri K-218]
 gi|333014540|gb|EGK33887.1| cold-shock DEAD box protein A [Shigella flexneri K-304]
 gi|333014963|gb|EGK34307.1| cold-shock DEAD box protein A [Shigella flexneri K-227]
          Length = 629

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 TAE---GEELDLETLAAALLKMA 432


>gi|306838409|ref|ZP_07471254.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF
           2653]
 gi|306406549|gb|EFM62783.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF
           2653]
          Length = 455

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 128/347 (36%), Gaps = 39/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            P   Q  AI   L+          +     GSGKT    + +   +            +
Sbjct: 29  EPKPIQTQAIPSQLEGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTAR 82

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  + I+  +++  I   ++ G + +  + K +         ++I T 
Sbjct: 83  ALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATP 138

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPR 433
               D +        Q   L+L   D     G    +K   KAT       L +AT    
Sbjct: 139 GRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKE 198

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L      D  ++   P G     I  V+ P+   ++      ++     ++  +  +
Sbjct: 199 IASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTR 258

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +   ++  R          E     +A IHG  S   ++  ++ F++GT ++L+AT + 
Sbjct: 259 TKHGADAVVRH--------LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIA 310

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 311 ARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 356


>gi|265994970|ref|ZP_06107527.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|262766083|gb|EEZ11872.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 455

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 128/347 (36%), Gaps = 39/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            P   Q  AI   L+          +     GSGKT    + +   +            +
Sbjct: 29  EPKPIQTQAIPSQLEGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTAR 82

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  + I+  +++  I   ++ G + +  + K +         ++I T 
Sbjct: 83  ALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATP 138

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPR 433
               D +        Q   L+L   D     G    +K   KAT       L +AT    
Sbjct: 139 GRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKE 198

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L      D  ++   P G     I  V+ P+   ++      ++     ++  +  +
Sbjct: 199 IASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTR 258

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +   ++  R          E     +A IHG  S   ++  ++ F++GT ++L+AT + 
Sbjct: 259 TKHGADAVVRH--------LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIA 310

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 311 ARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 356


>gi|157150549|ref|YP_001450886.1| DEAD-box ATP dependent DNA helicase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075343|gb|ABV10026.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 523

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 70/362 (19%), Positives = 131/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          ++      QA+++AP 
Sbjct: 25  SPIQEQTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLDQIETLILDEADEMLNMGFLEDIES-------IISRVPEERQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            K       ++P    I       E++++  + + E +K   +   ++ ++         
Sbjct: 188 IKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGR 247

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|111219903|ref|YP_710697.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni
           ACN14a]
 gi|111147435|emb|CAJ59085.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni
           ACN14a]
          Length = 608

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 131/355 (36%), Gaps = 41/355 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------ 318
           L  + +  PT  Q  A+  ++           + Q   G+GKT    + +   +      
Sbjct: 72  LAALGYEEPTPIQREAVPPLVAGRD------LLGQAATGTGKTAAFALPLLHRLTDDRTG 125

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           + G QA+++ P   LA Q  E I +Y ++    V  + G  P   + +AL +       +
Sbjct: 126 DHGPQALVLVPTRELAVQVSEAIHRYGRDLGARVLPVYGGAPIGRQVRALVQ----GVDV 181

Query: 379 IIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTA 428
           ++ T     D +    L        +L   DE    G  + +   L Q       +L +A
Sbjct: 182 VVATPGRALDHMGRGTLRLDGLHTVVLDEADEMLDMGFAEDIDAILEQAPQKRQTVLFSA 241

Query: 429 TPIPRTLVLTSLGDIDISKI-----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           T  PR   +      D  +I       +P     ++ V   + R  +     +++  E  
Sbjct: 242 TLPPRMDQIARRHLRDPVRIQIGRAAPEPGAAPLVRQVSYVVPRAYKTAALGRILDVESP 301

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           ++  +  +         R  V++              +HG MS   +E VM+  +  T  
Sbjct: 302 RSAIVFCRT--------REEVDQLADSLNGRGYRAESLHGGMSQEQRERVMERLRTATAD 353

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           LL+AT V   G+D    + ++  +      + +H++ GRVGR       I L  P
Sbjct: 354 LLVATDVAARGLDFEQLTHVVNYSVPSAPDSYVHRI-GRVGRAGREGVAITLAEP 407


>gi|303229600|ref|ZP_07316388.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515725|gb|EFL57679.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 432

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 128/352 (36%), Gaps = 22/352 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE +I  + +          I +   G+GKTL  L+ +   +       Q +I+A
Sbjct: 24  EPTPIQEQSIPIVFKG------NDIIAKAQTGTGKTLAFLLPILQRIHTDVHQEQVLIIA 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L +Q  +  K       + +  + G      + + L R    + H+I+GT     D
Sbjct: 78  PTRELIKQISDEAKVLGAVLDVDILPLIGGKTIESQLQQLGR----RPHVILGTPGRLLD 133

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +   L L  +         Q L +       +  L+  T   R L+L S    D  + 
Sbjct: 134 HAKRGSLHLDSIRRVVLDEADQMLHMGFLPDIEN--LIGQTDANRQLLLFSATIPDKIRN 191

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVE 505
             K    KP+       +   + I++   +++   K   +   I+E        F +  E
Sbjct: 192 LAKAYMTKPVSVTAEGKHITLDSIDQRVYMMNPEDKTPRLIKMIQEDNPYLAIVFCNKRE 251

Query: 506 RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
               L    T+   +IA +HG ++   +  ++  F     ++L+AT +   GID+   + 
Sbjct: 252 GAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITH 311

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +   +  H     +H++ GR GR       +    P            ++ T
Sbjct: 312 VYNYDVPHDVDYYIHRI-GRTGRAGNSGIAVTFATPADESWLRRIERAIQAT 362


>gi|157960747|ref|YP_001500781.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157845747|gb|ABV86246.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 432

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 64/405 (15%), Positives = 132/405 (32%), Gaps = 44/405 (10%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 +   +I + I        T  Q+ AI  + +          +     G+GKT  
Sbjct: 1   MRFESFSFAPEILRAISECGYEKMTPIQQQAIPAVRRGQDV------LASAQTGTGKTAA 54

Query: 310 ALIAMAAAVEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
             + +   +            +A+I+ P   LA Q  + I  Y +   + V  + G +  
Sbjct: 55  FALPILQKMLDNPSTTGRSNARALILTPTRELAAQIADNINDYAKYLDLKVVTVYGGVKM 114

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD-----EQHRF-----GVQQR 411
             +   L+R     A III T     + I    L L  VD     E  R          +
Sbjct: 115 DSQATKLKR----GADIIIATPGRLLEHIIACNLSLSNVDFLVLDEADRMLDMGFSADIQ 170

Query: 412 LKLTQKATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             L         LL +AT     + L    +   ++    ++      +  V+ P+ +  
Sbjct: 171 KILQAVNKKRQNLLFSATFSTAVKQLANEMMVKPNVIAADKQNTTAITVSQVVYPVEQRR 230

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           +     +++  +  +   +            R   ++            A++HG  +   
Sbjct: 231 KRELLSELIGKKNWQQVLVFT--------ATRDAADKLEKELNLDGIPTAVVHGEKAQGS 282

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +   +  FK G  ++L+AT V   G+D+     ++  +        +H++ GR GR  + 
Sbjct: 283 RRRALREFKEGKMRVLVATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRI-GRTGRAGKS 341

Query: 590 SSCILLYHPPLSKNSYTRLSVLKN-----TEDGFLIAEEDLKQRK 629
              I        +       ++       +  G+ +   DL  ++
Sbjct: 342 GVAISFVSREEERTLADIEKLIGQQLRRISIPGYEVGSRDLLIKQ 386


>gi|27366822|ref|NP_762349.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|320158706|ref|YP_004191084.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|27358389|gb|AAO07339.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|319934018|gb|ADV88881.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 427

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 139/368 (37%), Gaps = 27/368 (7%)

Query: 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA-MAAAV 318
           ++ + +        T  Q+ AI    +                G+GKT    +  +   +
Sbjct: 11  EVVKALEECGYEKLTPIQQKAIPVARRGHD------IFATAQTGTGKTAAFSLPLIQQLL 64

Query: 319 EAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
           E+G        +A+I AP   LA+Q  + IK YT+ T + V  I G    + + + LE  
Sbjct: 65  ESGKSASRKTARALIFAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQERMLEN- 123

Query: 372 AHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
                 I++ T    ++ I+   + +  + E   F    R+       A   +++     
Sbjct: 124 ---GVDILVATPGRLEEHIESGNVSVANI-EFLVFDEADRILDMGFINAVRKIMLDVETN 179

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           P+ ++ ++     +++++ K   RKP +  +   N     +  +   + + +K   +   
Sbjct: 180 PQIMMFSATTSSQLNELS-KDILRKPKRIAVERENTTAHTVAHVLYPVDQERKTELLSEL 238

Query: 492 IEEKKESN---FRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           I  K       F +  E  N + +          + HG  +   +   ++ FK G  +++
Sbjct: 239 IGRKNWQQVLVFVNYKETANDIVKELKLDGIKANVCHGDKAQSARRRALEEFKEGKVRVM 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+D+ D   ++  +        +H++ GR GR  +    +   +        
Sbjct: 299 VATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRI-GRTGRAGKQGHAVSFVNREEELTVV 357

Query: 606 TRLSVLKN 613
              ++++ 
Sbjct: 358 QVENLIQQ 365


>gi|290996658|ref|XP_002680899.1| predicted protein [Naegleria gruberi]
 gi|284094521|gb|EFC48155.1| predicted protein [Naegleria gruberi]
          Length = 452

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 75/416 (18%), Positives = 145/416 (34%), Gaps = 45/416 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           IN    I  +        PT  Q+ A   ++      N M+ +   + GSGKTL  L+  
Sbjct: 34  INFPHFIQNQFKEMNFKEPTAIQKQAWPIVM----SGNDMIGL--AETGSGKTLAFLLPG 87

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHY---EFIKKYTQNTQIIVEIITGNMPQAH 363
              V A        G   VI+ P   LA Q +   E              +    +    
Sbjct: 88  LMHVLAQKELKKGDGPIMVILTPTRELAIQIHGACENFCNAFVPDSKDRALKIACLYGGE 147

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKA 418
            RK   +    +  +II T     D +Q       +   +++DE  R           + 
Sbjct: 148 VRKTQIKECRSKPQVIIATPGRLLDFLQAGITNMKRCSYLVLDEADRMLDMGFNPQISQI 207

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP---AGRKPIKTVIIPINRIDEVIERL 475
           T+        TP  +TL  ++  +  +  +       A    I  +       +  +++ 
Sbjct: 208 TSQ------VTPDRQTLFFSATWNRSVQSMAMSYVSKAEPHFIVNIGSIETSANHRVKQS 261

Query: 476 KVVLSEGKKAYWICPQIEEKKE----------SNFRSVVERFNSLHEHFTSSIAIIHGRM 525
            + + E  K   +   +++  +             +   +               IHG  
Sbjct: 262 FLFIQESDKIARLTDLLDKLIKNPEDCRTLVFCKTKKRTDVVTERLREAGWPSLSIHGER 321

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++E V++ F++G   +L+AT V   G+DV +   +I  +  H   + +H++ GR GR
Sbjct: 322 KQEEREWVLEEFRSGKTPILVATDVAARGLDVENVKYVINYDMPHEIDSYIHRI-GRTGR 380

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF---LIAEEDLKQRKEGEILGIKQ 638
             +  + +  + P   +     + VL+  E      L+   DL  +  G++   +Q
Sbjct: 381 AGKEGNSVSFFTPEDVQLCTPLIKVLEEAEQDVPDKLVKLRDLSTKSHGDLSIKEQ 436


>gi|160380616|sp|A6ZUA1|DBP3_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP3; AltName: Full=DEAD
           box protein 3; AltName: Full=Helicase CA3
 gi|151943729|gb|EDN62039.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
          Length = 523

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 144/383 (37%), Gaps = 45/383 (11%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
           +   P  PT  Q  A   +L           +   + GSGKT    +   + +       
Sbjct: 129 ISKFP-KPTPIQAVAWPYLLSGKDV------VGVAETGSGKTFAFGVPAISHLMNDQKKR 181

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G Q ++++P   LA Q Y+ +   T    +    + G +P+  +R  L++       +++
Sbjct: 182 GIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKS-----QVVV 236

Query: 381 GTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK------ATAPHVLLMTAT 429
            T     D     S+   ++  +++DE  R   +   +  +       A+    L+ TAT
Sbjct: 237 ATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTAT 296

Query: 430 PIPRTLVLTSLGDIDISKIT-------EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
                  L S    +  K++               I  V+ P  +  +++E LK   S  
Sbjct: 297 WPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGP 356

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           KK   +      KKE+       R     ++   +IA IHG +S   +   ++ FK+G  
Sbjct: 357 KKNEKVLIFALYKKEA------ARVERNLKYNGYNIAAIHGDLSQQQRTQALNEFKSGKS 410

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+AT V   G+D+ +   +I           +H++ GR GR  +  +   L+      
Sbjct: 411 NLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRI-GRTGRAGQTGTAHTLFTEQEKH 469

Query: 603 NSYTRLSVLKNTEDGFLIAEEDL 625
            +   ++VL           EDL
Sbjct: 470 LAGGLVNVLNGAN---QPVPEDL 489


>gi|299140955|ref|ZP_07034093.1| ATP-dependent RNA helicase DeaD [Prevotella oris C735]
 gi|298577921|gb|EFI49789.1| ATP-dependent RNA helicase DeaD [Prevotella oris C735]
          Length = 542

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 125/364 (34%), Gaps = 46/364 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE+ I +IL+          +     G+GKT   L+ + + ++ GG        +IM
Sbjct: 25  TPVQENCIPEILKG------NDVLGVAQTGTGKTAAYLLPILSKLDDGGYPDNAINCLIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ +      +  +        +R     +     A ++I T     
Sbjct: 79  SPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQELKSLQLGADVVIATPGRLI 138

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTAT--PIPRTL 435
             I    +        IL   D     G    +    K        ++ +AT       L
Sbjct: 139 SHISLGNVDLSKVSFFILDEADRMLDMGFSDDIIKIAKKLPQTCQTIMFSATMPDKIEDL 198

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             T L +  + K+                +++  E I++   V  E +K   I    +  
Sbjct: 199 AKTLLKNPKVIKLA---------------VSKPAEKIKQSAYVCYETQKMGIIKDIFKNG 243

Query: 496 K------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +  V++     +    +   +H  +    ++ VM  FK+G   +L+AT 
Sbjct: 244 DLERVIIFCGSKLKVKQVAGALQRKHINCGEMHSDLDQATRDDVMFKFKSGQFDVLVATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           ++  GID+ D +++I  +  H     +H++ GR  R     S I                
Sbjct: 304 IVARGIDIDDIAMVINYDVPHDAEDYVHRI-GRTARAAREGSAITFVSEDDIYYFQQIEK 362

Query: 610 VLKN 613
            L+ 
Sbjct: 363 FLEK 366


>gi|294776591|ref|ZP_06742061.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
 gi|294449579|gb|EFG18109.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
          Length = 425

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 127/359 (35%), Gaps = 34/359 (9%)

Query: 271 FSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------Q 323
           F   T  QE  I  IL+          I     G+GKT   L+ +   +  GG       
Sbjct: 21  FEECTPVQEHTIPVILEGKD------LIGVAQTGTGKTAAYLLPVLNQLSKGGYPEDAIN 74

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            VIM+P   LAQQ  + ++ ++         + G        +  + +  G A ++I T 
Sbjct: 75  CVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQEKKGLTLG-ADVVIATP 133

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
                      +   K+   I+DE  R        L    +   + ++   P  R  ++ 
Sbjct: 134 GRLISHLSLGYVDLSKVSFFILDEADRM-------LDMGFSDDIMQIVKYLPKERQTIMF 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S       +   K     P++  +  +++  E I +   +  E +K   I    +++   
Sbjct: 187 SATMPAKIQQLAKTILNNPVEIKL-AVSKPAEKIIQTAYICYERQKLGIIQSLFQDQTPE 245

Query: 499 NF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  V+      +    ++  +H  +    +E +M  FK+G   +LIAT ++ 
Sbjct: 246 RVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVS 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            GID+ D  ++I  +  H     +H++ GR  R       I               + L
Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDYVHRI-GRTARANHDGCAITFVSEKEQPQFKAIENFL 363


>gi|288870006|ref|ZP_06112545.2| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
           13479]
 gi|288868832|gb|EFD01131.1| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
           13479]
          Length = 561

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 124/342 (36%), Gaps = 26/342 (7%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F   +  Q  AI   ++          I Q   G+GKT    I +   V+      
Sbjct: 20  ADMGFEEASPIQAQAIPVQMEGRD------IIGQAQTGTGKTAAFGIPLLQKVDPKSKKL 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+ + P   LA Q  + I++  +    + V  I G      + ++L+        IIIG
Sbjct: 74  QAIALCPTRELAIQVADEIRRLAKYMHGVKVLPIYGGQDIVKQIRSLKD----GTQIIIG 129

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D ++   +    +         + L +        +L        +T++ ++  
Sbjct: 130 TPGRVMDHMRRKTVKFDHIHTVVMDEADEMLNMGFLEDMETILSQL-PEDRQTVMFSATM 188

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK------ 495
              I+ I  K   ++P+   ++        + +    +    K   +C  ++        
Sbjct: 189 PQAIADIAHKF-QKEPVTVKVVKKELTVPKVTQYYYEVKPKTKVEVMCRLLDMYAPKLSV 247

Query: 496 -KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
              +  + V E   +L      +  + HG +  I ++ VM+SF+NG   +L+AT V   G
Sbjct: 248 VFCNTKKGVDELVQALQGRGYFAEGL-HGDLKQIQRDRVMNSFRNGRTDILVATDVAARG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           IDV D   +   +        +H++ GR GR           
Sbjct: 307 IDVDDVEAVFNYDLPQDDEYYVHRI-GRTGRAGREGIAFSFV 347


>gi|254719124|ref|ZP_05180935.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 535

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 74/393 (18%), Positives = 141/393 (35%), Gaps = 40/393 (10%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R   D      +  + + K+        + + G + + +       P   Q  AI   L
Sbjct: 64  RRFKADRECGVPLKEIELTKENTGG-FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQL 122

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
           +          +     GSGKT    + +   +            +A+I+AP   LA Q 
Sbjct: 123 EGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQI 176

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+  +++  I   ++ G + +  + K +         ++I T     D +       
Sbjct: 177 EQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATPGRLTDLMRDGLVDL 232

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISK 447
            Q   L+L   D     G    +K   KAT       L +AT       L      D  +
Sbjct: 233 SQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVR 292

Query: 448 ITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P G     I  V+ P+   ++      ++     ++  +  + +   ++  R    
Sbjct: 293 VEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGADAVVRH--- 349

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 E     +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV   S ++ 
Sbjct: 350 -----LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +        +H++ GR GR     + I LY P
Sbjct: 405 YDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|167562078|ref|ZP_02354994.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis EO147]
          Length = 408

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 70/364 (19%), Positives = 125/364 (34%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAKAIPVVLSGRDV------MGAAQTGTGKTASFSLPIIQRLLPQASTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       ++I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEVLI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    A    +  ++  +   D+    +K++     K   +
Sbjct: 203 SPEIKKLASTYLRNPQTIEVARSNATATNVTQIVYDVAEGDKQAAVVKLIRDRALKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      + IHG  S  ++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARQIERDGIVASAIHGDRSQSERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+V+   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIVELPAVINFDLPFSAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 373

Query: 609 SVLK 612
            ++K
Sbjct: 374 KLIK 377


>gi|152981080|ref|YP_001353634.1| ATP-dependent RNA helicase DbpA [Janthinobacterium sp. Marseille]
 gi|151281157|gb|ABR89567.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 478

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 83/463 (17%), Positives = 168/463 (36%), Gaps = 70/463 (15%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ +   T  Q  ++  IL+          I Q   GSGKT    I +   +      
Sbjct: 34  LDSLGYREMTPIQAQSLPVILE------LRDLIAQAKTGSGKTAAFGIGLLQKLNPTWFA 87

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  + T  I V  + G  P   +  +LE      AHI++
Sbjct: 88  VQALVICPTRELADQVSNELRRLARATENIKVLTLCGGAPMRPQIASLEH----GAHIVV 143

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    +D I            L+L   D     G  + +            +++A P  
Sbjct: 144 GTPGRIRDHISRETINLSKVQTLVLDEADRMVDMGFYEEIA----------GIVSACPTR 193

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R  +L S    D  +       R P++  +      D  IE+    +    +   +   +
Sbjct: 194 RQTLLFSATYPDDIRRASAEFLRDPVEIKV-EAQHDDSQIEQRFYAVDYDDRNAAVATLL 252

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +  +        N +       +       S   ++G +   +++ ++  F N +C +L+
Sbjct: 253 KHYRPVSTLAFCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLV 312

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+     +I  +        +H++ GR GRG++    + L  P   K    
Sbjct: 313 ATDVAARGLDIQSLGAVINVDVSKDTEVHIHRI-GRTGRGQDKGLALSLCAPNEKKWVKL 371

Query: 607 RLSVLKNTEDGFLIAEEDLK----------------------QRKEGEILG--IKQSGMP 642
                      F +  +DL+                      + + G++LG      G+ 
Sbjct: 372 IEEYQNKPVQWFDL--KDLEVAEGGDLHAPMVTLCIMGGKKDKLRPGDLLGALTGDVGLS 429

Query: 643 KFLIAQPELHDSLLEIA--RKDAKHILTQDPDLTSVRGQSIRI 683
           K  + +  + + +  +A  RK A     +  +  +++G++ ++
Sbjct: 430 KDQVGKINVFEFMTYVALDRKVADQAYARLSN-GNIKGRNFKM 471


>gi|71906768|ref|YP_284355.1| ATP-dependent RNA helicase DbpA [Dechloromonas aromatica RCB]
 gi|71846389|gb|AAZ45885.1| ATP-dependent RNA helicase DbpA [Dechloromonas aromatica RCB]
          Length = 466

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 80/468 (17%), Positives = 183/468 (39%), Gaps = 55/468 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + +   +   + +    S T  Q +++   L           I Q   GSGKT    +A+
Sbjct: 14  LPLSPAMLANLAQLEYLSMTPIQAASLPLALAG------NDLIAQAKTGSGKTAAFGLAL 67

Query: 315 AAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALER 370
              +       QA+++ P   LA Q  + I++  +    I V  + G     ++  +LE+
Sbjct: 68  LNRLNTSRFAVQAMVLCPTRELADQVTQEIRRLARFEENIKVLSLVGGSTLRNQANSLEK 127

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV-LLMTAT 429
                 HI++GT     D ++   L L   DE +   + +  ++        +  +    
Sbjct: 128 ----GVHIVVGTPGRIMDHMERGYLKL---DELNTLVLDEADRMLDMGFHDDIAYVAKRC 180

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P  R  +L S    +   +  +   R+P +  ++ ++  +  I +    + + ++   + 
Sbjct: 181 PAQRQTLLFSATYPEGIALLARQFLRQPKEVKLLELHE-ETKIRQRFYEVKDDERLDAVV 239

Query: 490 PQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
             ++  +        N +       ++  H       ++G +   +++ V+  F N +C 
Sbjct: 240 RLLKHYRPVSTLAFCNTKQQCRDLVNVLRHAGIHALTLNGDLEQRERDQVLIQFANRSCS 299

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+D+     +I  +        +H++ GR GRG+E    + L      + 
Sbjct: 300 VLVATDVAARGLDIDQLEAVINVDVTPDPEIHIHRI-GRTGRGDEEGWALSLCSSGDRRR 358

Query: 604 SYTRLSVLKN------------TEDGFLIA----------EEDLKQRKEGEILG--IKQS 639
             T   ++K             T+D  L+            +D K R  G+++G    ++
Sbjct: 359 VATIAEMMKCKLDVLDLKTVEVTDDSPLVPPMSTLLMLGGRKD-KIR-PGDVMGALAGEA 416

Query: 640 GMPKFLIAQPELHDS--LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           G+ +  + +  + D    + +AR  AK  + +      V+G+++++ +
Sbjct: 417 GLTREQVGKITVTDQSTYVAVARAVAKETVRKLSA-GKVKGKTVKVRI 463


>gi|54296291|ref|YP_122660.1| hypothetical protein lpp0320 [Legionella pneumophila str. Paris]
 gi|53750076|emb|CAH11468.1| hypothetical protein lpp0320 [Legionella pneumophila str. Paris]
          Length = 414

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 69/360 (19%), Positives = 132/360 (36%), Gaps = 39/360 (10%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +   + +  + ++ PT  Q  AI  IL           +     G+GKT   ++ +    
Sbjct: 10  EPLNRAVSELGYTNPTSIQLKAIPLILNGHD------LLGSAQTGTGKTASFVLPILQKA 63

Query: 319 EAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
               Q        +I+ P   LA Q +E I +Y +   +   +I G +   ++ K L+  
Sbjct: 64  SQQTQTSRNRAKVLILTPTRELAIQAHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDS- 122

Query: 372 AHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAP 421
                 I++ T     D     ++++ ++  +++DE  R      +   +K         
Sbjct: 123 ---GLEILVATPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKR 179

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
             LL +AT  P  RTL    L       I  +    K IK  +  ++   ++     ++ 
Sbjct: 180 QNLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDGNHKLALLSHLLH 239

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
                   +  + +           +    L E    S+AI HG  S   +   +  FK+
Sbjct: 240 KNNWGQTLVFSRTKHGA-------NKLVKQLAESQIYSVAI-HGNKSQAQRTKALADFKS 291

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  + LIAT +   GID+   + ++  +  H     +H++ GR GR       + L    
Sbjct: 292 GKVQTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRI-GRTGRAGASGLAVSLVSTE 350


>gi|332345119|gb|AEE58453.1| cold-shock DEAD box protein A [Escherichia coli UMNK88]
          Length = 629

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRHFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 TAE---GEELDLETLAAALLKMA 432


>gi|327489488|gb|EGF21281.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058]
          Length = 523

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 132/363 (36%), Gaps = 34/363 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          ++      QA+I+AP 
Sbjct: 25  SPIQEKTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTLVLT 438
           +   L L  +        DE    G  + +   +++       LL +AT     + + + 
Sbjct: 135 KRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGIK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  KI  K    + +    I +   ++     +++  E  +   +  +       
Sbjct: 195 FMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+ 
Sbjct: 249 --KRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +      + +H++ GR GR  +    I    P          ++ K    G 
Sbjct: 307 GVTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGL 365

Query: 619 LIA 621
             A
Sbjct: 366 KPA 368


>gi|300929852|ref|ZP_07145298.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 187-1]
 gi|300462214|gb|EFK25707.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 187-1]
          Length = 646

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 38  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 91

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 92  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 147

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 263

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 264 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 315

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 316 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 374

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 375 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 429

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 430 TAE---GEELDLETLAAALLKMA 449


>gi|163843319|ref|YP_001627723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis
           ATCC 23445]
 gi|163674042|gb|ABY38153.1| DEAD/DEAH box helicase domain protein [Brucella suis ATCC 23445]
          Length = 535

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 142/393 (36%), Gaps = 40/393 (10%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R   D   A  +  + + K+        + + G + + +       P   Q  AI   L
Sbjct: 64  RRFKADRECAVPLKEIELTKENTGG-FAALGITGVLLKGVEAAGMTEPKPIQMQAIPSQL 122

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
           +          +     GSGKT    + +   +            +A+I+AP   LA Q 
Sbjct: 123 EGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQI 176

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+  +++  I   ++ G + +  + K +         ++I T     D +       
Sbjct: 177 EQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATPGRLTDLMRDGLVDL 232

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISK 447
            Q   L+L   D     G    +K   KAT       L +AT       L      D  +
Sbjct: 233 SQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVR 292

Query: 448 ITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P G     I  V+ P+   ++      ++     ++  +  + +   ++  R    
Sbjct: 293 VEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGADAVVRH--- 349

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 E     +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV   S ++ 
Sbjct: 350 -----LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +        +H++ GR GR     + I LY P
Sbjct: 405 YDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|116074911|ref|ZP_01472172.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
 gi|116068133|gb|EAU73886.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
          Length = 449

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 66/377 (17%), Positives = 141/377 (37%), Gaps = 43/377 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  QE AI  +L           +     G+GKT    + M   +  G +       A
Sbjct: 37  TPSPIQEQAIPAVLSGRD------LMAAAQTGTGKTAGFTLPMLETLSHGARPGRGQIRA 90

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  +  + Y+++ ++  E++ G +    + + L++       +++ T  
Sbjct: 91  LVLTPTRELAAQVLDNARDYSRHLRLRSEVVFGGVKINPQIQRLQQ----GVDLLVATPG 146

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT--PIP 432
              D     ++++ ++  +++DE  R      +   ++           LL +AT  P  
Sbjct: 147 RLLDLHQQGAVRFERVEFLVLDEADRMLDMGFIHDIRRVLSRLPERRQNLLFSATFSPSI 206

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R L    L D    +IT      + ++ V+ P +   +      ++ S   +   +  + 
Sbjct: 207 RKLATGLLNDPLQIQITPPNQTARTVQQVVHPCDMKRKPDLLSHLIRSNDWQQVLVFSRT 266

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +    R      +     A IHG  S   +   +  FK+G+ ++L+AT +  
Sbjct: 267 --------KHGANRVAEKLTNEGLVAAAIHGNKSQGARTRALQGFKDGSVRVLVATDIAA 318

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+     ++  +  +     +H++ GR GR  E    I L     +          +
Sbjct: 319 RGIDIQQLPHVVNLDLPNVAEDYVHRI-GRTGRAGECGHAISLVAAEEALLLKAIERTTR 377

Query: 613 NTED-----GFLIAEED 624
            + +     GF     D
Sbjct: 378 ESLEKVLVPGFEPTVLD 394


>gi|332363463|gb|EGJ41246.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355]
          Length = 523

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 130/362 (35%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          ++      QA+I+AP 
Sbjct: 25  SPIQEQTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLNQIETLILDEADEMLNMGFLEDIES-------IISRVPEERQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            K       ++P    I       E++++  + + E +K   +   ++  +         
Sbjct: 188 IKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVDQPELSIVFGR 247

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|261218608|ref|ZP_05932889.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261321895|ref|ZP_05961092.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|260923697|gb|EEX90265.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261294585|gb|EEX98081.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
          Length = 462

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 126/347 (36%), Gaps = 39/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            P   Q  AI   L+          +     GSGKT    + +   +            +
Sbjct: 36  EPKPIQTQAIPSQLEGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTAR 89

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  + I+  +++  I   ++ G + +  + K +         ++I T 
Sbjct: 90  ALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATP 145

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPR 433
               D +        Q   L+L   D     G    +K   KAT       L +AT    
Sbjct: 146 GRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKE 205

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L      D  ++   P G     I  V+ P+   ++      ++     ++  +  +
Sbjct: 206 IASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTR 265

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   +      E     +A IHG  S   ++  ++ F++GT ++L+AT + 
Sbjct: 266 T--------KHGADTVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIA 317

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 318 ARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 363


>gi|145640153|ref|ZP_01795737.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|145274739|gb|EDK14601.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.4-21]
          Length = 613

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 133/364 (36%), Gaps = 36/364 (9%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+S I  +L           +     GSGKT    + + A +   E   
Sbjct: 21  SDLGFETPSPIQQSCIPHLLNG------NDVLGMAQTGSGKTAAFALPLLAQIDPSEKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  +++ +      +  + G      R     R     A +I+G
Sbjct: 75  QMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGG----QRYDIQLRALKQGAQVIVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 131 TPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMP 190

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I      ++ + +    L+ +  E   A  I 
Sbjct: 191 EPIRRITKRFMNDPKEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +NG+  +++AT 
Sbjct: 251 ARTKTGTLD--------ITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S+++  +      + +H++ GR GR       +L   P   +       
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEH 361

Query: 610 VLKN 613
           ++K 
Sbjct: 362 LMKK 365


>gi|88803270|ref|ZP_01118796.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88780836|gb|EAR12015.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 609

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 79/372 (21%), Positives = 139/372 (37%), Gaps = 37/372 (9%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +   K L ++ +  PT  QE AI  I+   S ++ +    Q   G+GKT    + +   +
Sbjct: 11  EPINKALTDLGYEQPTVIQEKAIPQII---SSRSDLKAFAQ--TGTGKTAAFSLPILELL 65

Query: 319 EAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHG 374
           ++     QA+I++P   LA Q    IK + +    + V  + G      + ++L+R    
Sbjct: 66  DSNSGNVQAIILSPTRELAVQIGNNIKDFCKYLPDVKVTTVYGGSSMEDQIRSLKR---- 121

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVL 424
            + I++GT     D I+   L L  V        DE    G +  L   L         L
Sbjct: 122 GSQIVVGTPGRTVDLIKRRALKLGNVKWLVLDEADEMLNMGFKDELDKVLEATPDTKQTL 181

Query: 425 LMTATPIPRTLVLTSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVV-LSE 481
           L +AT       +         +IT  +K  G   +      +          ++  L+ 
Sbjct: 182 LFSATFPKEVESIAKNYMTKPVEITSGQKNQGADSVSHEYYSVTERTRYPALKRIADLNP 241

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
              A   C           R   E  ++L +    S   +HG +S   ++SVM  F+  T
Sbjct: 242 DIYAIIFCRT--------RRETQEVADNLIKDGY-SADALHGDLSQGQRDSVMGKFRKKT 292

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            ++L+AT V   G+DV + + +I            H+  GR GR       I+L +    
Sbjct: 293 IQILVATDVAARGLDVTELTHVINHKLPDQIENYTHR-SGRTGRAGNTGISIVLVNGKEK 351

Query: 602 KNSYTRLSVLKN 613
                   +++ 
Sbjct: 352 GKLRPIEKIIQK 363


>gi|198419625|ref|XP_002130533.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Ciona intestinalis]
          Length = 672

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 69/359 (19%), Positives = 128/359 (35%), Gaps = 36/359 (10%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--------GQAVI 326
             Q  +   +            + Q   G+GKTL   I +   +            + ++
Sbjct: 115 PIQIQSFNHVYDGKDV------VAQARTGTGKTLSFAIPLVEKLIMNRCKDYGRPPKVLV 168

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           MAP   LA Q  +  +  +Q   +    I G  P   +    ER   G   I++GT    
Sbjct: 169 MAPTRELAIQVRKDFQDISQ--GLSSVCIYGGTPYFQQ----ERSMRGGVDIVVGTPGRI 222

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP----IPRTLVLTSLGD 442
            D +Q   L L  V+      V Q L +        +L    T      P+TL+ ++   
Sbjct: 223 MDHVQKGNLQLGSVEHVVLDEVDQMLDMGFAPKVEEILGYAYTEEREGPPQTLLFSATCP 282

Query: 443 IDI---SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE-----E 494
             +   S+   +P+    + T+   + R    +E L +      +A  I   ++      
Sbjct: 283 PWVRNTSRKYMRPSETVHVDTIGKSLVRTATTVEHLAIRCQYSDRAECIGNVVQMYSGQH 342

Query: 495 KKESNFRSVVERFNSLHEH---FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +   F    +  N L            ++HG +    +E  + ++++GT + L+AT V 
Sbjct: 343 GRAMIFTDTKKDANELVVCEALQQQKAQVLHGDIEQRQREITLKAYRDGTVRCLVATNVA 402

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
             G+D+ +  ++I  +      + +H+  GR GR      C+  Y P           V
Sbjct: 403 ARGLDIPEIDLVIQTSPPSDIDSYIHR-SGRTGRAGRTGVCVCFYKPREDMMIKKVERV 460


>gi|161486782|ref|NP_806876.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|161501917|ref|NP_457662.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|213052975|ref|ZP_03345853.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425440|ref|ZP_03358190.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646152|ref|ZP_03376205.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213850431|ref|ZP_03381329.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289825794|ref|ZP_06544962.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 629

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LTDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 SAE---GEELDLETLAAALLKMA 432


>gi|170719840|ref|YP_001747528.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169757843|gb|ACA71159.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 439

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 67/363 (18%), Positives = 137/363 (37%), Gaps = 39/363 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
           +PT  Q  AI  +L           +     G+GKT    + +   +            +
Sbjct: 23  TPTPVQAQAIPAVLAGRD------LMAAAQTGTGKTAGFALPVLQRLALEGEKVASNSIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA+Q +  +++Y +N  +    + G +    +   L R       +++ T 
Sbjct: 77  ALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMRLRR----GVDLLVATP 132

Query: 384 ALFQD-----SIQYYK---LILVIVDEQHRFGVQQRLKLTQKA--TAPHVLLMTATPIPR 433
               D     ++++ +   L+L   D     G  + L+    A       LL +AT   +
Sbjct: 133 GRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQTLLFSATFSDQ 192

Query: 434 TLVLTSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
             +L  L   D   I   P  A    +K  ++P+++  +V     ++  +  K   +   
Sbjct: 193 IRMLAGLALNDPLSIEVSPRNAAATTVKQWLVPVDKKRKVDLFCHLLRKQRWKQVLVFA- 251

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    R+ V++          +   IHG      ++  +DSFK    ++L+AT V 
Sbjct: 252 -------KTRNGVDQLVERLLGEGVNADGIHGDRPQATRQRALDSFKAREIQVLVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D  +++  +        +H++ GR GR       I L      +   T  +++
Sbjct: 305 ARGLDIDDLPLVVNLDLPIVAEDYVHRI-GRTGRAGNKGEAISLVCADEVQQLATIETLI 363

Query: 612 KNT 614
           + T
Sbjct: 364 RQT 366


>gi|25511900|pir||AB0901 ATP-dependent RNA helicase (dead-box protein) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16504348|emb|CAD07800.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29139168|gb|AAO70736.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 646

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 38  LTDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 91

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 92  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 147

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 263

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 264 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 315

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 316 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 374

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 375 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQP 429

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 430 SAE---GEELDLETLAAALLKMA 449


>gi|85711377|ref|ZP_01042436.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85694878|gb|EAQ32817.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 423

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 132/370 (35%), Gaps = 41/370 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
            PT  Q  AI  +   M+  + M        G+GKT    + +   ++          + 
Sbjct: 23  EPTPIQAQAIPAV---MAGNDVMAA---AQTGTGKTAGFTLPILEMLKGNERAKANTARV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +  Y ++  +   ++ G +    +   L +       I++ T  
Sbjct: 77  LILTPTRELAAQVGESVANYGKDLPLSYAVVFGGVKINPQMMKLRK----GVDILVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     +I++ +L  +++DE  R      +   +K       ++   P  R  ++ S
Sbjct: 133 RLLDLYQQNAIRFPQLETLVLDEADRMLDMGFIHDIKK-------IIKLLPAKRQNLMFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI------CPQIE 493
               D  +   K     P++  +   N   E IE+      +  K   +          +
Sbjct: 186 ATFSDEIRKLAKSLVNNPVEISVAAPNATAERIEQTLYAAEKTHKPRMLMQILRNLNLPQ 245

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               S  +    R     +      A IHG  S   +   +  FK+G  ++L+AT +   
Sbjct: 246 VIVFSRTKHGANRLVKQLDKDGFLAAAIHGNKSQGARTKALSDFKSGAVQVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL-- 611
           G+D+     +I  +        +H++ GR GR  ++   I L      +       ++  
Sbjct: 306 GLDIEKLPYVINYDLPQVAEDYVHRI-GRTGRAGQVGHAISLVMDEEFRTLKAIEKLIGQ 364

Query: 612 ---KNTEDGF 618
              + T DGF
Sbjct: 365 PIERRTLDGF 374


>gi|94309401|ref|YP_582611.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93353253|gb|ABF07342.1| RNA helicase [Cupriavidus metallidurans CH34]
          Length = 540

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 121/363 (33%), Gaps = 35/363 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
           +PT  Q  AI  IL+          +     G+GKT    + M   +             
Sbjct: 23  TPTPIQAQAIPAILKG------GDLLAGAQTGTGKTAGFTLPMLQLLSETAARANGGNAP 76

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+++ P   LA Q  E ++ Y +  ++   ++ G +    + +AL R     
Sbjct: 77  RGARPNVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGVGINPQIEALRR----G 132

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             I++ T     D +    + L  V E        R+           +L    P  + L
Sbjct: 133 VDIVVATPGRLLDHVAQRTIDLSHV-ELLVLDEADRMLDMGFIHDIRKVLNVLPPKRQNL 191

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    DI  + ++     P    +   N   E + +    +   +K   +   + + 
Sbjct: 192 LFSATFSDDIRALADRLLD-NPASIEVARRNTTAETVAQRVFPVDRERKRELLAHLVRQH 250

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +    R          S   IHG  S   +   +  FK GT +LL+AT 
Sbjct: 251 DWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALTEFKAGTLRLLVATD 310

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   GID+     ++  +  +     +H++ GR GR       I L              
Sbjct: 311 IAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGAEGEAISLVCVDEHGLLRDIER 369

Query: 610 VLK 612
           ++K
Sbjct: 370 LIK 372


>gi|300727714|ref|ZP_07061100.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
 gi|299775002|gb|EFI71608.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
          Length = 555

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 126/362 (34%), Gaps = 42/362 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL           +     G+GKT   L+ + + ++ GG        V+M
Sbjct: 25  TPIQEKTIPEILNGHDV------LGVAQTGTGKTAAYLLPVLSKLDDGGYPEGAINCVVM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ +    Q +  I        +R     +     A ++I T     
Sbjct: 79  SPTRELAQQIDQAMQGFGYYLQGVSSIAVYGGNDGNRYDQEVKSLKLGADVVIATPGRLI 138

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVL 437
             I    +        IL   D     G    +     +       ++ +AT   +   L
Sbjct: 139 SHISLGNVDLSKVSFFILDEADRMLDMGFADDIKAIAKELPQTCQTIMFSATMPEKIEDL 198

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP------Q 491
                 +  +I              + +++  E I++   +  E +K   I         
Sbjct: 199 AKTLLKNPIEIK-------------LAVSKPAEKIKQSAYICYETQKLGIIKDIFKAGDL 245

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    ++ V++ NS  +    +   +H  ++  ++  +M  FK G   +L+AT ++
Sbjct: 246 KRVIVFCGSKTKVKQVNSALQRKHINSGEMHSDLTQEERNDIMYKFKAGQLDVLVATDIV 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ D +++I  +  H     +H++ GR  R +     I L               L
Sbjct: 306 SRGIDIDDITMVINYDVPHDTEDYVHRI-GRTARADRDGVAITLVSEEDQFYFQQTEKFL 364

Query: 612 KN 613
           + 
Sbjct: 365 EK 366


>gi|160884579|ref|ZP_02065582.1| hypothetical protein BACOVA_02566 [Bacteroides ovatus ATCC 8483]
 gi|237718558|ref|ZP_04549039.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|260174903|ref|ZP_05761315.1| ATP-dependent RNA helicase [Bacteroides sp. D2]
 gi|299145716|ref|ZP_07038784.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
 gi|315923146|ref|ZP_07919386.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156110318|gb|EDO12063.1| hypothetical protein BACOVA_02566 [Bacteroides ovatus ATCC 8483]
 gi|229452018|gb|EEO57809.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|298516207|gb|EFI40088.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
 gi|313697021|gb|EFS33856.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 422

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 131/372 (35%), Gaps = 43/372 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE AI  IL+          I     G+GKT   L+ +   +  G         VIM
Sbjct: 25  TPIQEQAIPIILEGKD------LIAVAQTGTGKTAAFLLPVLNKLSEGKHPEDAINCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ ++    +    + G        +  + +  G A ++I T     
Sbjct: 79  SPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLTLG-ADVVIATPGRLI 137

Query: 388 DS-----IQYYKLILVIVDE---QHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVL 437
                  +   K+   I+DE       G  + +             ++ +AT   +   L
Sbjct: 138 AHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKERQTIMFSATMPAKIQQL 197

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +    + S+I              + +++  E I +   V  E +K   I     ++  
Sbjct: 198 ANTILNNPSEIK-------------LAVSKPAEKIIQAAYVCYENQKLGIIRSLFMDEVP 244

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +  V+      +    ++  +H  +    +E+VM  FK G   +L+AT ++
Sbjct: 245 ERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDIV 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ D  ++I  +  H     +H++ GR  R       +         N  +  + L
Sbjct: 305 ARGIDIDDIRLVINFDVPHDSEDYVHRI-GRTARANNDGVALTFISEKEQSNFKSIENFL 363

Query: 612 KNTEDGFLIAEE 623
           +       I EE
Sbjct: 364 EKEIYKIPIPEE 375


>gi|169600899|ref|XP_001793872.1| hypothetical protein SNOG_03302 [Phaeosphaeria nodorum SN15]
 gi|118575175|sp|Q0UY62|DBP3_PHANO RecName: Full=ATP-dependent RNA helicase DBP3
 gi|111068913|gb|EAT90033.1| hypothetical protein SNOG_03302 [Phaeosphaeria nodorum SN15]
          Length = 592

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 92/425 (21%), Positives = 157/425 (36%), Gaps = 50/425 (11%)

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
             RK         + V  +  +        +PT  Q +    +L        M+ +   +
Sbjct: 171 AARKLRPIVNFKYLPVTDESQRAPFAGFT-APTPIQAATWPFLL----SGRDMVGV--AE 223

Query: 302 VGSGKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
            GSGKTL   +    A+ +       G +AVI++P   LA Q Y+ +        + V  
Sbjct: 224 TGSGKTLAFGVPCVRAILSLPKDKRKGIKAVIVSPTRELAVQIYDQLVALAHPAGLSVVC 283

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRFGVQ 409
           + G +P+  +  A       +AHI++ T     D I            V++DE  R   +
Sbjct: 284 VYGGVPKDPQVAACR-----KAHIVVATPGRLNDLIGDGSADLSNADYVVLDEADRMLDK 338

Query: 410 -----QRLKLTQKATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAG-------R 455
                 R  ++Q       L+ TAT  P  R L  T +       I +  +G        
Sbjct: 339 GFEEPIRQIISQTPKKRQTLMFTATWPPSVRDLASTFMVSPVRITIGDNQSGELRANVRI 398

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           K +  V+ P  +   +++ LK   S   K   I      KKE+       R  +      
Sbjct: 399 KQLVEVLDPHAKEQRLLQLLKQYQSGKNKDDRILVFCLYKKEAM------RIENFIRMKG 452

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +  IHG +S   + + + +FK G   LL+AT V   G+D+    ++I           
Sbjct: 453 FRVGGIHGDLSQEKRSASLAAFKEGQVPLLVATDVAARGLDIPAVKLVINVTFPLTAEDY 512

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635
           +H++ GR GR  +    I  +       S + ++VLK       + E   +  K G  + 
Sbjct: 513 VHRI-GRTGRAGKEGLAITFFTEHDKGLSGSLINVLKAANQ--EVPE---ELLKFGTTVK 566

Query: 636 IKQSG 640
            K+ G
Sbjct: 567 KKEHG 571


>gi|56478694|ref|YP_160283.1| ATP-dependent RNA helicase DeaD [Aromatoleum aromaticum EbN1]
 gi|56314737|emb|CAI09382.1| ATP-dependent RNA helicase DeaD [Aromatoleum aromaticum EbN1]
          Length = 658

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 132/344 (38%), Gaps = 36/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q   I  +L           + +   G+GKT    + +   ++      Q +++A
Sbjct: 66  TPSPIQAICIPHLLAGHD------LLGEAQTGTGKTAAFALPLLDRLDLAVKNPQVLVLA 119

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  ++Y +N     V  + G      + + L R     AH+I+GT     
Sbjct: 120 PTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLRQLAR----GAHVIVGTPGRVM 175

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIP--RTL 435
           D I+   L        +L   DE  R G    ++   + T       L +AT     R +
Sbjct: 176 DHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAERQTALFSATMPDAIRRV 235

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAYWICPQIEE 494
               L +    KI          +     I+   ++    ++  + E   A  I  + + 
Sbjct: 236 AHRYLREPREVKIKASTTTVSTTRQRYCQISVAHKLDALTRILEVEEDFDAAIIFVRTKT 295

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                  + VE  + L E    S A ++G M+   +E V++  K G   +++AT V   G
Sbjct: 296 -------ATVELADKL-EARGYSAAALNGDMTQQLRERVIEQLKGGQLDIVVATDVAARG 347

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +DV   S +I  +  +   A +H++ GR GR     S IL   P
Sbjct: 348 LDVSRISHVINYDIPYDTEAYVHRI-GRTGRAGRTGSAILFVAP 390


>gi|330930035|ref|XP_003302864.1| hypothetical protein PTT_14848 [Pyrenophora teres f. teres 0-1]
 gi|311321492|gb|EFQ89040.1| hypothetical protein PTT_14848 [Pyrenophora teres f. teres 0-1]
          Length = 601

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 91/422 (21%), Positives = 157/422 (37%), Gaps = 50/422 (11%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           ++ +  +                    +PT  Q +    +L        M+ +   + GS
Sbjct: 183 RKLRPILNFKYLPVDDAQGAFFAKFS-APTPIQAATWPFLL----SGRDMVGV--AETGS 235

Query: 305 GKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           GKTL   +     + A       G +AVI++P   LA Q Y+ +        + V  + G
Sbjct: 236 GKTLAFGVPCVRYISALPQDKRKGIKAVIVSPTRELAVQIYDQLVALATPAGLSVVCVYG 295

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRFGVQ--- 409
            +P+  +  A       +AHI++ T     D I        K   V++DE  R   +   
Sbjct: 296 GVPKDPQVAACR-----KAHIVVATPGRLNDLIGEGSADLSKAEYVVLDEADRMLDKGFE 350

Query: 410 --QRLKLTQKATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAG-------RKPI 458
              R  ++Q       L+ TAT  P  R L  T +       I +  +G        K +
Sbjct: 351 EAIRQIISQTPKKRQTLMFTATWPPSVRDLASTFMNSPVKITIGDNQSGELRANVRIKQV 410

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             V+ P ++   +++ LK   S   K   I      KKE+       R  +        +
Sbjct: 411 VEVVDPRDKEQRLLQLLKQYQSGKNKDDRILVFCLYKKEAV------RIENFIRMKGFRV 464

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG +S   + + + +FK G   LL+AT V   G+D+    ++I           +H+
Sbjct: 465 GGIHGDLSQEKRSASLAAFKEGHVPLLVATDVAARGLDIPAVKVVINVTFPLTAEDYVHR 524

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           + GR GR  +    I L+       S + ++VLK       + E   +  K G  +  K+
Sbjct: 525 I-GRTGRAGKEGLAITLFTDHDKSLSGSLINVLKAANQ--PVPE---ELMKFGTTVKKKE 578

Query: 639 SG 640
            G
Sbjct: 579 HG 580


>gi|306843924|ref|ZP_07476519.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO1]
 gi|306275679|gb|EFM57403.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO1]
          Length = 455

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 128/347 (36%), Gaps = 39/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            P   Q  AI   L+          +     GSGKT    + +   +            +
Sbjct: 29  EPKPIQTQAIPSQLEGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTAR 82

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  + I+  +++  I   ++ G + +  + K +         ++I T 
Sbjct: 83  ALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATP 138

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPR 433
               D +        Q   L+L   D     G    +K   KAT       L +AT    
Sbjct: 139 GRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKE 198

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L      D  ++   P G     I  V+ P+   ++      ++     ++  +  +
Sbjct: 199 IASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTR 258

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +   ++  R          E     +A IHG  S   ++  ++ F++GT ++L+AT + 
Sbjct: 259 TKHGADAVVRH--------LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIA 310

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 311 ARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 356


>gi|153806359|ref|ZP_01959027.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185]
 gi|149131036|gb|EDM22242.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185]
          Length = 420

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 127/362 (35%), Gaps = 43/362 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE AI  IL+          I     G+GKT   L+ +   +  G         VIM
Sbjct: 25  TPIQEQAIPIILEGKD------LIAVAQTGTGKTAAFLLPVLNKLSEGKHPEDAINCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ ++         + G        +  + +  G A ++I T     
Sbjct: 79  SPTRELAQQIDQQMEGFSYFMPASSVAVYGGNDGILFEQQKKGLTLG-ADVVIATPGRLI 137

Query: 388 DS-----IQYYKLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                  +   K+   I+DE  R             +         ++ +AT   +   L
Sbjct: 138 AHLSLGYVDLSKVSYFILDEADRMLDMGFYDDIMQIVKYLPKERQTIMFSATMPAKIQQL 197

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +    + S+I              + ++R  + I +   V  E +K   I     ++  
Sbjct: 198 ANTILNNPSEIK-------------LAVSRPADKIIQAAYVCYENQKLGIIRNLFMDEVP 244

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +  V+      +    ++  +H  +  + +E+VM  FK G   +L+AT ++
Sbjct: 245 ERVIIFASSKIKVKEVTKALKSMKLNVGEMHSDLEQVQREAVMHDFKAGRINILVATDIV 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ D  ++I  +  H     +H++ GR  R       +         N  +  + L
Sbjct: 305 ARGIDIDDIRLVINFDVPHDSEDYVHRI-GRTARANNDGVALTFVSEKEQSNFKSIENFL 363

Query: 612 KN 613
           + 
Sbjct: 364 EK 365


>gi|124361137|gb|ABN09109.1| Helicase, C-terminal [Medicago truncatula]
          Length = 413

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 129/348 (37%), Gaps = 43/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+  I   ++ +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFIKGLDV------IQQAQSGTGKTATFCSGILQQLDYSVTECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----SSGVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L   
Sbjct: 172 MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEAL--- 228

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
                   +IT K    KP++ ++      ++ + +    V  E  K   +C   E    
Sbjct: 229 --------EITRKFMN-KPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAI 279

Query: 497 -----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             GIDV   S++I  +        LH++ GR GR       I      
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTTD 386


>gi|322417740|ref|YP_004196963.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp.
           M18]
 gi|320124127|gb|ADW11687.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
          Length = 442

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 127/345 (36%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
            PT  Q  +I   L           I     G+GKT   ++     +         G + 
Sbjct: 23  EPTPIQAESIPLALSGRD------LIGSAQTGTGKTASFVLPALERLLVPSPARGKGPRI 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  + +K Y +  ++    I G MP   +   L +       II+ T  
Sbjct: 77  LVLTPTRELANQVVDAVKTYGKFMRVRCGSILGGMPYREQMMLLSQP----VDIIVATPG 132

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I + +L ++++DE  R            +     +   A    +TL+ T+
Sbjct: 133 RLIDHLDRRSINFSRLEMLVLDEADRM------LDMGFSEDVDRIAAAAPAERQTLLFTA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPIN----RIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             D  ++K+ ++   + P++  +         I++ +     +  + +    +       
Sbjct: 187 TMDDAMAKLAQR-LLKDPVRVAVDGQQLTNLSIEQRLHVTDDMRHKNRLLQHLVADASVT 245

Query: 496 KESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           K   F +  +  + L     S   + A +HG MS   +   + + + G  +LL+AT V  
Sbjct: 246 KAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNRTITNMRRGKVRLLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            G+DV   S +I  +   F    +H++ GR GR       I    
Sbjct: 306 RGLDVSGISHVINYDLPKFAEDYVHRI-GRTGRAGATGIAISFCS 349


>gi|78048143|ref|YP_364318.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036573|emb|CAJ24264.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 458

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 82/460 (17%), Positives = 168/460 (36%), Gaps = 63/460 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + ++  T  Q  ++  ILQ +        I Q   GSGKT    + +   ++     
Sbjct: 17  IDALGYTVLTPIQAQSLPPILQGLDV------IAQAPTGSGKTAAFGLGLLQKLDPAVTR 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + ++K       + + ++TG MP   +  +LE        +++
Sbjct: 71  AQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEA---HDPQVVV 127

Query: 381 GTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    Q+  +           L+L   D     G ++ ++        H          
Sbjct: 128 GTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKH---------R 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           ++L+ ++     I  +  +   ++P++  +   +   E+ ++   V    ++       +
Sbjct: 179 QSLLFSATFPDSIRTLA-RELLKEPVEITVEGADSAPEIDQQFFEVDPTYRQKAVAGLLL 237

Query: 493 EEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
               E      N R  V+      + F  S   +HG M   D++ V+  F N +C +L+A
Sbjct: 238 RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY-- 605
           + V   G+DV D S ++            H++ GR  R  +    + L  P  +  +   
Sbjct: 298 SDVAARGLDVEDLSAVVNYELPTDTETYRHRI-GRTARAGKHGLALSLVAPRETARAQAL 356

Query: 606 --------TRLSVLKNTEDGFLI---AEEDLKQ-------RKEGEILG--IKQSGMPKFL 645
                           T     +   A   L+         + G+ILG    ++G+    
Sbjct: 357 EAEQGQPLKWSRAPLATARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAA 416

Query: 646 IAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           I +  ++   S + IAR      L        ++G+  R+
Sbjct: 417 IGKIAIYPTRSYVAIARAQVAKALAHL-HAGKIKGRRFRV 455


>gi|320590131|gb|EFX02574.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 713

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 130/374 (34%), Gaps = 45/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------AVEAG--- 321
           PT  Q+ +I  +   M  ++ M        GSGKT   L  + +         V  G   
Sbjct: 241 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQAFITGPSVVPNGQAG 294

Query: 322 ---------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                      ++I+AP   L  Q YE  +K+   + +   ++ G      + + +ER  
Sbjct: 295 NFGRQRKAYPTSLILAPTRELVSQIYEESRKFAYRSWVRPCVVYGGADIGSQLRQIER-- 352

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMT 427
                +++ T     D I+  ++ L  +     DE  R          Q         M 
Sbjct: 353 --GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEP--QIRRIVEGEDMP 408

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                +TL+ ++    DI  +  +   +  +   +  +    E I +    + +  K   
Sbjct: 409 GVNERQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEYVEDNDKRSV 467

Query: 488 ICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +   +              + + +  +    +       IHG  +  ++E  ++ F+NG 
Sbjct: 468 LLDILHTHGAGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGR 527

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           C +L+AT V   G+D+ + + ++  +        +H++ GR GR          ++    
Sbjct: 528 CPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI-GRTGRAGNTGLSTAFFNRGNR 586

Query: 602 KNSYTRLSVLKNTE 615
                 + +LK   
Sbjct: 587 GVVRELIDLLKEAN 600


>gi|303231103|ref|ZP_07317843.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514234|gb|EFL56236.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 432

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 128/352 (36%), Gaps = 22/352 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE +I  + +          I +   G+GKTL  L+ +   +       Q +I+A
Sbjct: 24  EPTPIQEQSIPIVFKG------NDIIAKAQTGTGKTLAFLLPILQRIHTDVHQEQVLIIA 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L +Q  +  K       + +  + G      + + L R    + H+I+GT     D
Sbjct: 78  PTRELIKQISDEAKVLGAVLDVDILPLIGGKTIESQLQQLGR----RPHVILGTPGRLLD 133

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +   L L  +         Q L +       +  L+  T   R L+L S    D  + 
Sbjct: 134 HAKRGSLHLDSIRRVVLDEADQMLHMGFLPDIEN--LIGQTDANRQLLLFSATIPDKIRN 191

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVE 505
             K    KP+       +   + I++   +++   K   +   I+E        F +  E
Sbjct: 192 LAKAYMTKPVSVTAEGKHITLDSIDQRVYMMNPEDKTPRLIKMIQEDNPYLAIVFCNKRE 251

Query: 506 RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
               L    T+   +IA +HG ++   +  ++  F     ++L+AT +   GID+   + 
Sbjct: 252 GAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITH 311

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +   +  H     +H++ GR GR       +    P            ++ T
Sbjct: 312 VYNYDVPHDVDYYIHRI-GRTGRAGNSGIAVTFATPADESWLRRIERAIQAT 362


>gi|149917594|ref|ZP_01906091.1| putative ATP-dependent RNA helicase RhlE [Plesiocystis pacifica
           SIR-1]
 gi|149821657|gb|EDM81055.1| putative ATP-dependent RNA helicase RhlE [Plesiocystis pacifica
           SIR-1]
          Length = 437

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 64/388 (16%), Positives = 132/388 (34%), Gaps = 47/388 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAV 325
           +PT  Q  AI   +           +     G+GKT    + +   ++A        +A+
Sbjct: 23  TPTPIQTQAIPSAIAGRD------ILGCAQTGTGKTAAFSLPILQRLDADPPDEPRIRAL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I++P   LA Q    I  Y ++ ++   +I G +    +   L R       +++ T   
Sbjct: 77  IVSPTRELAAQIGANIGSYAKHLELWHTVIFGGVKDKPQIAELRR----GVDVLVATPGR 132

Query: 386 FQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D      I   ++ + ++DE  +      L            ++ A P  R  +  S 
Sbjct: 133 LLDLMGRGHIDLKRVEVFVLDEADQMLDMGFLPDI-------RRIVKALPSKRQTLFFSA 185

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
                 K         P++  +  ++   +V ++    + +G K   +   +        
Sbjct: 186 TMPSAIKELAATLLDDPVEVAVARVSEPADV-DQRLYFVDKGNKRKLLVDLLRADPSVSR 244

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R          S A IHG  S   +   +++FK G  ++L+AT +   
Sbjct: 245 SLVFSRTKHGANRIAKHLSAAGVSSAAIHGNKSQNARTRALEAFKGGELRVLVATDIAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+   S +I  +  +     +H++ GR  R       +                +L+ 
Sbjct: 305 GLDISKVSHVINFDLPNVPETYIHRI-GRTARAGNSGIALSFCDVEERAYLVDIERLLRA 363

Query: 614 TED-----GFLIAEE-----DLKQRKEG 631
             +     G+  ++      DL  R+ G
Sbjct: 364 HIERIEDHGYPPSQALPELTDLAARRSG 391


>gi|332186811|ref|ZP_08388553.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
 gi|332013144|gb|EGI55207.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
          Length = 580

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 89/441 (20%), Positives = 170/441 (38%), Gaps = 61/441 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
           +PT  Q + I    +D +Q   +  I+    GSGKT+   +AMA+ +  G          
Sbjct: 21  APTPVQAAVI----EDDAQGRDL--IVSAQTGSGKTVAFGLAMASELLQGADHLPPAGAP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    ++      +  +    G M  +  R+AL    +  AHI++GT
Sbjct: 75  MALVIAPTRELALQVSRELEWLYAGARARIATCVGGMDASRERRAL----NHGAHIVVGT 130

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
               +D ++   L        +L   DE    G ++ L+    AT             RT
Sbjct: 131 PGRLRDHLERGALDLSSLKFVVLDEADEMLDMGFREDLEQILDATP---------TERRT 181

Query: 435 LVLTSLGDIDISKITEKPA-GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           L+ ++     I ++ ++     K I+T+       D   + + V  ++ + A     ++ 
Sbjct: 182 LLFSATMPRPIVQLAKRYQTNAKRIETISEDKGHADIAYQVVTVAPADIEAAVVNLLRLH 241

Query: 494 EKK-ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           E +    F +  +    LH            + G  S  ++   + + ++G  ++ +AT 
Sbjct: 242 EAEVAILFCATRDNVRHLHASLVERGFSAVALSGEHSQNERNHALQALRDGRARVCVATD 301

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   +++I         A  H+  GR GR     + IL+   P          
Sbjct: 302 VAARGIDLPGLTLVIHVEIPRDAEALQHR-SGRTGRAGRKGTAILIVPYP---RRRRVEG 357

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQP---ELHDSLLEIARKDAKHI 666
           +L+        A  D + R+   +  I++    + L A     E+     E  R+ A  +
Sbjct: 358 MLRG-------ARIDAEWRRAPTLEEIREQDRERLLTALLAPVEVD----EADRELATRL 406

Query: 667 LTQDP--DLTSVRGQSIRILL 685
           L +    D+ +   ++ R  L
Sbjct: 407 LAEKSAEDIAAALVRAHRAAL 427


>gi|302138848|gb|ADK94762.1| vasa [Clarias gariepinus]
          Length = 681

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 129/364 (35%), Gaps = 37/364 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + + G         
Sbjct: 268 KPTPVQKYGIPIISAGRD------LMACAQTGSGKTAAFLLPILQRLMSDGAAASKFSEV 321

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              + +I+AP   L  Q Y   +K+   T +   ++ G +   +    ++ +  G  +++
Sbjct: 322 QEPEVIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGISTGY---TIQEVLKG-CNVL 377

Query: 380 IGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L  V     DE  R         T          M      +T
Sbjct: 378 CGTPGRLLDIIGRGKVGLSKVRYLVLDEADRMLDMGFE--TDMRKLVSSPGMPPKEQRQT 435

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI ++         +  V+  +      IE+L + ++   K   +   ++ 
Sbjct: 436 LMFSATYPEDIQRLAADFLKENYLFLVVGVVGGACSDIEQLIIQVTRYSKREQLLEMLKT 495

Query: 495 KKESNFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +      VE         +           IHG     ++E  +  F+ G C +L+AT
Sbjct: 496 TGDERTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALSDFRTGKCPVLVAT 555

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-PLSKNSYTR 607
           +V   G+D+     ++  +        +H++ GR GR       +  + P P +  + + 
Sbjct: 556 SVAARGLDIEHVQHVVNFDLPKSIEEYVHRI-GRTGRCGNTGRAVSFFDPEPDAHLARSL 614

Query: 608 LSVL 611
           + VL
Sbjct: 615 VKVL 618


>gi|300692445|ref|YP_003753440.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07]
 gi|299079505|emb|CBJ52183.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07]
          Length = 549

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 128/366 (34%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA---AAVEAGG------ 322
            PT  Q  AI  IL+          +     G+GKT    + +    +AV+         
Sbjct: 23  EPTPIQRQAIPAILKG------GDLLAGAQTGTGKTAGFTLPLLHRLSAVQPNKVHTSHG 76

Query: 323 -----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                +A+++ P   LA Q  E ++ Y +   +   ++ G +    +  AL+R       
Sbjct: 77  MRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKR----GVD 132

Query: 378 IIIGTHALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I++ T     D +         + L+++DE  R      +   +K      +L    P  
Sbjct: 133 IVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRK------ILNILPPKR 186

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           + L+ ++    DI  + ++    +P    +   N   E +E+    +   +K   +   +
Sbjct: 187 QNLLFSATFSDDIRALADRLLD-QPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLV 245

Query: 493 EEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +            +    R              IHG  S   +   +  FK GT ++L+
Sbjct: 246 RDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFKAGTLRVLV 305

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT +   GID+     ++  +  +     +H++ GR GR       I L           
Sbjct: 306 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGAQGEAISLVCVDEHGLLRD 364

Query: 607 RLSVLK 612
              ++K
Sbjct: 365 IERLIK 370


>gi|84624218|ref|YP_451590.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|161898981|ref|YP_201355.2| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188576177|ref|YP_001913106.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84368158|dbj|BAE69316.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188520629|gb|ACD58574.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 458

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 86/460 (18%), Positives = 167/460 (36%), Gaps = 63/460 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + ++  T  Q  ++  IL+ +        I Q   GSGKT    + +   ++     
Sbjct: 17  IDALGYTVLTPVQAQSLPPILRGLDV------IAQAPTGSGKTAAFGLGLLQKLDPALTR 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + ++K       + + ++TG MP   +  +LE       H+++
Sbjct: 71  AQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEA---HDPHVVV 127

Query: 381 GTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    Q+  +           L+L   D     G ++ ++        H          
Sbjct: 128 GTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKH---------- 177

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R  +L S    DI +   +   + PI+  +   +   E+ ++   V    ++       +
Sbjct: 178 RQSLLFSATFPDIIRTLAREILKDPIEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLL 237

Query: 493 EEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
               E      N R  V+      + F  S   +HG M   D++ V+  F N +C +L+A
Sbjct: 238 RFTPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY-- 605
           + V   G+DV D S ++            H++ GR  R  +    + L  P  +  +   
Sbjct: 298 SDVAARGLDVEDLSAVVNYELPTDTETYRHRI-GRTARAGKHGLALSLVAPRETARAQAL 356

Query: 606 --------TRLSVLKNTEDGFLI---AEEDLKQ-------RKEGEILG--IKQSGMPKFL 645
                           T     +   A   L+         + G+ILG    ++G+    
Sbjct: 357 EAEQGQPLKWSRAPLATARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAA 416

Query: 646 IAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           I +  ++   S + IAR      L        ++G+  R+
Sbjct: 417 IGKIAIYPTRSYVAIARAQVAKALAHL-HAGKIKGRRFRV 455


>gi|327262891|ref|XP_003216257.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like [Anolis
           carolinensis]
          Length = 1021

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 138/373 (36%), Gaps = 49/373 (13%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------ 318
           F  T  Q+ +I  +L           +     GSGKT   LI + A +            
Sbjct: 235 FKLTPVQKHSIPIVLAGRD------LMACAQTGSGKTAAFLIPILAHMLRDGITATHFKE 288

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           +   + +I+AP   L  Q +   +K++  T +   +I G +   H    + +  +    I
Sbjct: 289 QQEPECIIVAPTRELINQIFLESRKFSYGTCVRPVVIYGGIQMGHTIHQIMQGCN----I 344

Query: 379 IIGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQK---------ATAPHVL 424
           +  T     D I   K+ L      ++DE  R          +K               L
Sbjct: 345 LCATPGRLLDIINRGKIGLTKLKYLVLDEADRMLDMGFGPDMKKLISSPGMPSKDQRQTL 404

Query: 425 LMTATPIPRTLVL---TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           + +AT       L       D     + +       ++  I+ +N+ D+  + L+++ + 
Sbjct: 405 MFSATFPEEIQRLAGEFLKVDYLFVVVGQVGGACSDVEQTILQVNQYDKREKLLEILNAI 464

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           GK+   +  + ++K +     + + +             IHG     ++E  +  F++G 
Sbjct: 465 GKERTMVFVETKKKADFIATFLCQEY--------IPTTSIHGDREQREREEALQCFRSGK 516

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-PL 600
           C +L+AT+V   G+D+ +   +I  +        +H++ GR GR       I  + P   
Sbjct: 517 CPVLVATSVAARGLDIENVQHVINFDLPSAIDEYVHRI-GRTGRCGNTGKAISFFDPRSD 575

Query: 601 SKNSYTRLSVLKN 613
           S  +   + VL +
Sbjct: 576 SSIAQPLVKVLAD 588


>gi|254884100|ref|ZP_05256810.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|319640865|ref|ZP_07995576.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
 gi|254836893|gb|EET17202.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|317387502|gb|EFV68370.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
          Length = 425

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 127/359 (35%), Gaps = 34/359 (9%)

Query: 271 FSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------Q 323
           F   T  QE  I  IL+          I     G+GKT   L+ +   +  GG       
Sbjct: 21  FEECTPVQEHTIPVILEGKD------LIGVAQTGTGKTAAYLLPVLNQLSKGGYPEDAIN 74

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            VIM+P   LAQQ  + ++ ++         + G        +  + +  G A ++I T 
Sbjct: 75  CVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQEKKGLTLG-ADVVIATP 133

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
                      +   K+   I+DE  R        L    +   + ++   P  R  ++ 
Sbjct: 134 GRLISHLSLGYVDLSKVSFFILDEADRM-------LDMGFSDDIMQIVKYLPKERQTIMF 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S       +   K     P++  +  +++  E I +   +  E +K   I    +++   
Sbjct: 187 SATMPAKIQQLAKTILNNPVEIKL-AVSKPAEKIIQTAYICYERQKLGIIQSLFQDQTPE 245

Query: 499 NF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  V+      +    ++  +H  +    +E +M  FK+G   +LIAT ++ 
Sbjct: 246 RVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVS 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            GID+ D  ++I  +  H     +H++ GR  R       I               + L
Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDYVHRI-GRTARANHDGCAITFVSEKEQTQFKAIENFL 363


>gi|148910547|gb|ABR18348.1| unknown [Picea sitchensis]
 gi|224284155|gb|ACN39814.1| unknown [Picea sitchensis]
 gi|224286107|gb|ACN40764.1| unknown [Picea sitchensis]
          Length = 413

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 128/343 (37%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLLDCQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++      Q+ V    G       ++ L        H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLQVKVHACVGGTSVRDDQRILMS----GVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++ + L        +L   DE    G + ++    +   +   V + +AT  P  L +T
Sbjct: 172 MLRRHSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + + + D  ++ L          Y      +   
Sbjct: 232 RKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FVNTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTKD 386


>gi|46202850|ref|ZP_00052498.2| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 402

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 121/344 (35%), Gaps = 27/344 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  QE +I  +LQ          +     G+GKT    + +   ++           +
Sbjct: 25  TPTPIQEQSIPHLLQG------SDVLGLAQTGTGKTASFALPLLQRLDQFKKRAMPKSCR 78

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA Q  +  K Y  + ++   ++ G +    + K +     G   +++ T 
Sbjct: 79  ILVLTPTRELAVQVGQSFKTYGCHYRLRHALVFGGVGMVPQIKTMA----GGVDVLVATP 134

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D I    + L  V+        + L +        ++ M   P  R  VL S    
Sbjct: 135 GRLLDLIDQGAIRLDSVEALVLDEADRMLDMGFIQPIRKIVAM--VPKQRQTVLFSATMP 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ------IEEKKE 497
           D            P++  + P++   + I++  + +    K   +         +     
Sbjct: 193 DSIVGLANSVLHTPVRVEVTPVSSTVDKIDQKVLFVDREHKRTLLTDILGGADVVRALVF 252

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +    R   L E        IHG  S   ++  +  F++G  K L+AT +   GIDV
Sbjct: 253 TRTKHGANRVVELLEKAGIDADAIHGNKSQGARQKALSDFRDGKIKALVATDIAARGIDV 312

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
              + +I     +   + +H++ GR  R       + L     S
Sbjct: 313 DGITHVINFELPNEPESYVHRI-GRTARAGASGIALSLCDGDES 355


>gi|323352691|ref|ZP_08087661.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
 gi|322121727|gb|EFX93473.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
          Length = 523

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 131/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          ++      QA+I+AP 
Sbjct: 25  SPIQEQTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L  +     DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLNQIETLILDEADEMLNMGFLEDIES-------IISRVPEERQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            K       ++P    I       E++++  + + E +K   +   ++ ++         
Sbjct: 188 IKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGR 247

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|239993440|ref|ZP_04713964.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii ATCC 27126]
          Length = 459

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 85/454 (18%), Positives = 166/454 (36%), Gaps = 65/454 (14%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIM 327
           +  +  Q  ++ + LQ          I Q   GSGKTL  +I     VE      QA+I+
Sbjct: 25  YQLSPIQAQSLPEALQGKDV------IGQAQTGSGKTLCFVIPALQHVEVNDFTTQAIIL 78

Query: 328 APIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P   LA Q  +  +   +N   I V  + G  P   + ++L+       HII+GT    
Sbjct: 79  CPTRELADQVAQQCRSAAKNIGNIKVTTLCGGQPMGPQIQSLKHS----PHIIVGTPGRV 134

Query: 387 QDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLV 436
            D ++  ++ L  V        D     G +  L++   Q       LL +AT   +   
Sbjct: 135 MDHVEKRRIDLSNVKLRVLDEADRMLDMGFEDDLRIIFGQTPKQVQTLLFSATFTEQIER 194

Query: 437 LTSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +      +      +    KP  T     ++P  R   +  +  +   + K A   C + 
Sbjct: 195 VAKQYLHNPVTCKVESQDSKPAITQLGYNVLPHTRTQAL--KAVLTHYQPKNAIVFCNR- 251

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                     V E    L E   S+  +  G +    + SV+  F +   ++L+AT V  
Sbjct: 252 -------KVQVNEVVEELIEDGFSAAGL-QGDLEQHQRTSVLMQFASDALQVLVATDVAA 303

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ D + +I           +H++ GR  R       + L              + +
Sbjct: 304 RGLDIDDVACVINYTVSEEPETHIHRI-GRTARAGAQGMAVTLVSDDEEHFLRKIEVLQE 362

Query: 613 N-----------------TEDGFL---IAEEDLKQRKEGEILG--IKQSGMPKFLIAQPE 650
           +                 T+  F    ++    ++ + G+++G   K +G+P   + + +
Sbjct: 363 SDIPLKGAQSLRFHKNKITQPEFTCISLSAGKKEKLRPGDLVGALTKDAGIPGDDLGKIK 422

Query: 651 LHDSL--LEIARKDAKHILTQDPDLTSVRGQSIR 682
           + +S+  + +  +  K  +    +   ++G+ IR
Sbjct: 423 VQNSMSFVAVKTRSVKKAMAHFRE-GKIKGKRIR 455


>gi|219110339|ref|XP_002176921.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411456|gb|EEC51384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 529

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 82/429 (19%), Positives = 149/429 (34%), Gaps = 43/429 (10%)

Query: 213 RKAKDFEWTSPA-RERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-- 269
           +  KDF    P  R R   +         +++R     +  +  +        +   +  
Sbjct: 89  QFEKDFYIEHPDVRARSDQEADAWRASKQIVVRGHDVPKPVMTFDEASMPEYVLNEVLKC 148

Query: 270 PF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------- 320
            F  PT  Q       L+          +     GSGKTL  L+     + A        
Sbjct: 149 GFDKPTPIQSQGWPMALKGR------NMVGVSATGSGKTLAFLLPAMIHINAQPYLKPGD 202

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G   +++AP   LA Q  E   K+  +++I   ++ G + +  + + L       A I I
Sbjct: 203 GPIVLVLAPTRELAVQIKEECDKFGSSSEIKNTVVYGGVKKHTQLRELRA----GAEICI 258

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATP 430
            T     D ++           L+L   D     G + +L+    Q      VL+ +AT 
Sbjct: 259 ATPGRLIDHLEQGNTNLKRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQVLMWSATW 318

Query: 431 IPRTLVLTSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYW 487
                 L +    D  ++T            T II +    +    L+  L E       
Sbjct: 319 PKEVQALANDYLQDFYQVTVGSLDLSANKDVTQIIEVCTDMDKYRNLQRYLRENLSPKDR 378

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +   +E KK  +  +   R +            +HG  S  +++  +  FK     LL+A
Sbjct: 379 VLVFVETKKGCDMLTRSLRSDGFQAR------AMHGDKSQEERDWALREFKGMQSTLLVA 432

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN-SYT 606
           T V   G+DV D  I++  +      + +H++ GR GR  +    +  + P  +   +  
Sbjct: 433 TDVAARGLDVDDIRIVVNFDFPKEMDSYIHRV-GRTGRAGKKGFAVSFFVPDKNARLARE 491

Query: 607 RLSVLKNTE 615
            + +L  T 
Sbjct: 492 LVDILNRTS 500


>gi|227112581|ref|ZP_03826237.1| ATP-dependent RNA helicase DeaD [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 627

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 151/414 (36%), Gaps = 48/414 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LTDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLNNLKPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    ++++   + V  + G      R     R   G A I++
Sbjct: 75  PQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGG----QRYDVQLRALRGGAQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S IT +P   +   T +  + + D ++  L+    +   
Sbjct: 191 PEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWT-VQGMRKNDALVRFLEAEDFDAAI 249

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +               + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 250 IFV----------RTKNATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDAESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIA-EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
                 +K T     +   E L QR+  +     Q    +   +  +++ +LL 
Sbjct: 358 RNVERTMKLTIPEVELPNAELLGQRRLAKFAAKVQ---QQLESSDLDMYRALLA 408


>gi|324507937|gb|ADY43357.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 625

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 153/442 (34%), Gaps = 56/442 (12%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP--------INVEGKIAQK 264
           R  ++ +W S   +++  ++    ++ ++  R QF+ +  +          +V   + + 
Sbjct: 137 RGLREIDWRSQDLKQI--EKNFYHELPVVAQRSQFEVDRWMQENQVTVQGRDVPRPVFEF 194

Query: 265 ILRNIP----------FS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
                P          F  PT  Q  +                +     GSGKTL  ++ 
Sbjct: 195 NESGFPEVLVNMLYSSFERPTIIQSISWPIASSGRD------IVSIAKTGSGKTLAFILP 248

Query: 314 -MAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
            +    +        G   +++ P   LAQQ  E  ++Y +   + V  + G   +  + 
Sbjct: 249 GIIHTTKQPPRGRGEGPSVLVLLPTRELAQQVQEVSREYCKAMGLSVTCLFGGAARGSQA 308

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLT-- 415
           + LER       + I T     D ++           L+L   D     G + +++    
Sbjct: 309 RDLER----GVDVAIATPGRLLDFLESGTTNLRRCSYLVLDEADRMLDMGFEPQIRKIVS 364

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDI--SKITEKPAGRKPIKTVIIPINRIDEVIE 473
           Q       L+ +AT       L S    D     +           T ++ +    +   
Sbjct: 365 QIRPDRQTLMFSATWPKEVRALASDFQSDHAFLNVGSLELAANHNITQVVEVVEEYQKQG 424

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           R+  +L++        P+ +       +   +               IHG  +  +++ V
Sbjct: 425 RMMTLLTDIMNQ----PECKTLVFVETKRKADDLTRSMRRDGWPTLCIHGDKNQGERDWV 480

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  FK+G   +L+AT V   G+DV D   +I  +  +     +H++ GR  R E+  +  
Sbjct: 481 LSEFKSGKTPILLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRI-GRTARCEKKGTAY 539

Query: 594 LLYHPPLSKNSYTRLSVLKNTE 615
             + P  +  +   + V++   
Sbjct: 540 TFFTPSNAPKARDLIKVMEEAN 561


>gi|256113603|ref|ZP_05454423.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 535

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 142/393 (36%), Gaps = 40/393 (10%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R   D   A  +  + + K+        + + G + + +       P   Q  AI   L
Sbjct: 64  RRFKADRECAVPLKEIELTKENTGG-FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQL 122

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
           +          +     GSGKT    + +   +            +A+I+AP   LA Q 
Sbjct: 123 EGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQI 176

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+  +++  I   ++ G + +  + K +         ++I T     D +       
Sbjct: 177 EQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATPGRLTDLMRDGLVDL 232

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISK 447
            Q   L+L   D     G    +K   KAT       L +AT       L      D  +
Sbjct: 233 SQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVR 292

Query: 448 ITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P G     I  V+ P+   ++      ++     ++  +  + +   ++  R    
Sbjct: 293 VEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGADAVVRH--- 349

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 E     +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV   S ++ 
Sbjct: 350 -----LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +        +H++ GR GR     + I LY P
Sbjct: 405 YDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|91794302|ref|YP_563953.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716304|gb|ABE56230.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 419

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 74/367 (20%), Positives = 126/367 (34%), Gaps = 28/367 (7%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 N+   +   I       PT  Q  AI +IL           ++    G+GKT  
Sbjct: 10  MSFTAFNLHPVLLASIKAQSYVDPTPVQRQAIPEILLGHD------LLVGAQTGTGKTAA 63

Query: 310 ALIAMAAAVE-------AGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
             I +   +         G   + +I+ P   LA Q    I    Q T++   I  G   
Sbjct: 64  FAIPLVHKLLMQSEEAHQGKVIKGLILTPTRELALQVQHNIHALLQGTELKHAIAYGGAS 123

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
              +     R       I++ T     D +++  + L  V E   F    R  L      
Sbjct: 124 IGEQV----RSFKAGVDILVATPGRLLDHLRHKAVSLKHV-EYLVFDEADR-MLDMGFKD 177

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
             V L+   P  R  +L S    D      K    +P    +   N     IE     + 
Sbjct: 178 EIVDLLKRLPKQRQTLLFSATLNDSIFSFSKNLLNEPKVIEVAKANTKVAKIEERVYCVD 237

Query: 481 EGKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534
           E +K   +C  + +++      F    +  ++L      S       HG +S   +ESV+
Sbjct: 238 EERKLSLLCHLLSKERWQQVLVFSRTKQGADNLACQMQKSGIEALAFHGDLSQSVRESVL 297

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
             F     ++L+AT V   G+D+ D + ++     H     +H++ GR GR  +    + 
Sbjct: 298 KDFSQAKVQVLVATDVAARGLDIEDLNYVVNYELPHVSEDYIHRI-GRTGRAGKDGIAVT 356

Query: 595 LYHPPLS 601
           L+    +
Sbjct: 357 LFAIEDT 363


>gi|87302363|ref|ZP_01085188.1| Superfamily II DNA and RNA helicase [Synechococcus sp. WH 5701]
 gi|87283288|gb|EAQ75244.1| Superfamily II DNA and RNA helicase [Synechococcus sp. WH 5701]
          Length = 427

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 135/359 (37%), Gaps = 36/359 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------V 325
           P+  Q  AI  +L           +     G+GKT    + M   +  G  A       +
Sbjct: 17  PSPIQVQAIPAVLSGRDV------MAAAQTGTGKTAGFTLPMLERLRHGPHARNNQVRSL 70

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E ++ Y +   +  +++ G +    + + L R     A +++ T   
Sbjct: 71  VLTPTRELAAQVAESVQAYGRFLDLRGDVVFGGVKVNPQMQRLRR----GADVLVATPGR 126

Query: 386 FQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D     +I++ +L ++++DE  R      ++  QK      +L    P  + L+ ++ 
Sbjct: 127 LMDLYQQNAIRFDRLEILVLDEADRMLDMGFIRDIQK------ILALLPPKRQNLLFSAT 180

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
            +  I K+       +P++    P NR   ++E++       +K   +   I        
Sbjct: 181 FNPSIRKLAH-GLLHQPLQLQATPENRAAPLVEQVMHPCDMARKGDLLSHLIRSNDWQQV 239

Query: 500 -----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +    R          +   IHG  S   +   + SFK+G  ++L+AT +   G
Sbjct: 240 LVFSRTKHGANRLAERLSQEGVAAMAIHGNKSQGARTRALASFKSGELRVLVATDLAARG 299

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           +D+     ++  +  +     +H++ GR GR  +    + L      +       V+ N
Sbjct: 300 LDIEQLPHVVNLDLPNVAEDYVHRI-GRTGRAGQSGHALSLVAAEEHELLRAIEKVIGN 357


>gi|325928093|ref|ZP_08189306.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|325541591|gb|EGD13120.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 458

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 82/460 (17%), Positives = 168/460 (36%), Gaps = 63/460 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + ++  T  Q  ++  ILQ +        I Q   GSGKT    + +   ++     
Sbjct: 17  IDALGYTVLTPIQAQSLPPILQGLDV------IAQAPTGSGKTAAFGLGLLQKLDPAVTR 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + ++K       + + ++TG MP   +  +LE        +++
Sbjct: 71  AQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEA---HDPQVVV 127

Query: 381 GTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    Q+  +           L+L   D     G ++ ++        H          
Sbjct: 128 GTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAGRCDKH---------R 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           ++L+ ++     I  +  +   ++P++  +   +   E+ ++   V    ++       +
Sbjct: 179 QSLLFSATFPDSIRTLA-RELLKEPVEITVEGADSAPEIDQQFFEVDPTYRQKAVAGLLL 237

Query: 493 EEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
               E      N R  V+      + F  S   +HG M   D++ V+  F N +C +L+A
Sbjct: 238 RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY-- 605
           + V   G+DV D S ++            H++ GR  R  +    + L  P  +  +   
Sbjct: 298 SDVAARGLDVEDLSAVVNYELPTDTETYRHRI-GRTARAGKHGLALSLVAPRETARAQAL 356

Query: 606 --------TRLSVLKNTEDGFLI---AEEDLKQ-------RKEGEILG--IKQSGMPKFL 645
                           T     +   A   L+         + G+ILG    ++G+    
Sbjct: 357 EAEQGQPLKWSRAPLATARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAA 416

Query: 646 IAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           I +  ++   S + IAR      L        ++G+  R+
Sbjct: 417 IGKIAIYPTRSYVAIARAQVAKALAHL-HAGKIKGRRFRV 455


>gi|200386509|ref|ZP_03213121.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199603607|gb|EDZ02152.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 629

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 164/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LTDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMSGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 SAE---GEELDLETLAAALLKMA 432


>gi|150005667|ref|YP_001300411.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
 gi|149934091|gb|ABR40789.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
          Length = 425

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 127/359 (35%), Gaps = 34/359 (9%)

Query: 271 FSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------Q 323
           F   T  QE  I  IL+          I     G+GKT   L+ +   +  GG       
Sbjct: 21  FEECTPVQEHTIPVILEGKD------LIGVAQTGTGKTAAYLLPVLNQLSKGGYPEDAIN 74

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            VIM+P   LAQQ  + ++ ++         + G        +  + +  G A ++I T 
Sbjct: 75  CVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQEKKGLTLG-ADVVIATP 133

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
                      +   K+   I+DE  R        L    +   + ++   P  R  ++ 
Sbjct: 134 GRLISHLSLGYVDLSKVSFFILDEADRM-------LDMGFSDDIMQIVKYLPKERQTIMF 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S       +   K     P++  +  +++  E I +   +  E +K   I    +++   
Sbjct: 187 SATMPAKIQQLAKTILNNPVEIKL-AVSKPAEKIIQTAYICYERQKLGIIQSLFQDQTPE 245

Query: 499 NF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  V+      +    ++  +H  +    +E +M  FK+G   +LIAT ++ 
Sbjct: 246 RVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVS 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            GID+ D  ++I  +  H     +H++ GR  R       I               + L
Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDYVHRI-GRTARANHDGCAITFVSEKEQTQFKAIENFL 363


>gi|134095351|ref|YP_001100426.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 gi|133739254|emb|CAL62303.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 449

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 128/364 (35%), Gaps = 43/364 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q  AI  +L           +     G+GKT    + +   +   G          
Sbjct: 24  PTPIQAQAIPAVLAG------GDLLAGAQTGTGKTAGFTLPILHRLATSGTPHASASAQR 77

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   LA Q  E ++ Y++   +   +I G +    + K L+        I++
Sbjct: 78  PIRALVLTPTRELAAQVEESVRTYSKYLNLNSAVIFGGVGINPQIKLLKH----GVDILV 133

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     R  L         LL +AT 
Sbjct: 134 ATPGRLLDHMQQGTVNLSKVEILVLDEADRMLDMGFIKDIRRVLAVLPKNRQNLLFSATF 193

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
                 L    L    + ++  + +  + I+  I P++R  +    +   L +      +
Sbjct: 194 SNEIKALADGLLNSPAMIEVARRNSTVEVIEQKIHPVDRDKK--HPMLAHLIKTNNWSQV 251

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                 K  +N     +    L +   S +AI HG  S   +   +  FK+G+ ++L+AT
Sbjct: 252 LVFTRTKHGAN-----KLVEQLEKDGISGMAI-HGNKSQSARTRALSEFKDGSLQVLVAT 305

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            +   GID+     ++  +  +     +H++ GR GR       + L             
Sbjct: 306 DIAARGIDIDQLPHVVNYDLPNVPEDYVHRI-GRTGRAGATGEAVSLVCVDELDMLKDIE 364

Query: 609 SVLK 612
            ++K
Sbjct: 365 KLIK 368


>gi|193067315|ref|ZP_03048283.1| cold-shock DEAD box protein A [Escherichia coli E110019]
 gi|192959272|gb|EDV89707.1| cold-shock DEAD box protein A [Escherichia coli E110019]
          Length = 629

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 TAE---GEELDLETLAAALLKMA 432


>gi|332884045|gb|EGK04325.1| hypothetical protein HMPREF9456_01353 [Dysgonomonas mossii DSM
           22836]
          Length = 374

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 68/366 (18%), Positives = 137/366 (37%), Gaps = 37/366 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N+   I + +      +PT  QE AI   L +         +     G+GKT    + +
Sbjct: 6   LNIIEPILKALEEKGYTTPTPIQEKAIIPALTNRD------ILGLAQTGTGKTAAFSLPI 59

Query: 315 AAAVEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +            +A+I+ P   LA Q  + +  YTQ T +   +I G + Q  +  
Sbjct: 60  IQQLYLNKVSGKRREIRALILTPTRELAIQINDSLNDYTQYTGLRHCVIYGGVKQKAQTD 119

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAP 421
            L+        I++ T     D I    + L  +     DE  R      +   +     
Sbjct: 120 ELKT----GIDILVATPGRLLDLINQGFINLDSIRHFVLDEADRMLDMGFIHDIK----- 170

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             LL       +TL  ++     I+ ++ +   R P+K  + P + + + I++    + +
Sbjct: 171 -RLLPKLPKEKQTLFFSATMPSTIASLS-RSILRDPLKVEVTPASSVIDTIKQYLYFVEK 228

Query: 482 GKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            +K   +   +++ K+         +   ++   L          IHG  S   ++  + 
Sbjct: 229 QEKKDLLINLLKKDKKQSVLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALT 288

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK+   ++LIAT +   GIDV    ++I  +        +H++ GR GR     + +  
Sbjct: 289 NFKSQKTRVLIATDIAARGIDVDQLELVINYDLPDVPETYVHRI-GRTGRAGNSGTALTF 347

Query: 596 YHPPLS 601
                +
Sbjct: 348 CSAEEN 353


>gi|323346404|gb|EGA80692.1| Ded1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 608

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 130/373 (34%), Gaps = 43/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------------- 316
            PT  Q+ ++  +       N    +     GSGKT   L  + +               
Sbjct: 168 KPTPVQKYSVPIV------ANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQG 221

Query: 317 ---AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                +A   AVIMAP   LA Q ++  KK+T  + +   ++ G  P  ++ + +ER   
Sbjct: 222 SFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIER--- 278

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  K+ L  V     DE  R          Q         MT 
Sbjct: 279 -GCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEP--QIRHIVEDCDMTP 335

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++    DI  +  +      I   +  +    E I +  + +    K   +
Sbjct: 336 VGERQTLMFSATFPADIQHLA-RDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSAL 394

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +    +         + + ++              IHG  +  ++E  + +F++G  
Sbjct: 395 LDLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAA 454

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+AT V   G+D+ + + +I  +        +H++ GR GR          ++   S 
Sbjct: 455 TLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRI-GRTGRAGNTGLATAFFNSENSN 513

Query: 603 NSYTRLSVLKNTE 615
                  +L    
Sbjct: 514 IVKGLHEILTEAN 526


>gi|323307275|gb|EGA60555.1| Ded1p [Saccharomyces cerevisiae FostersO]
          Length = 605

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 130/373 (34%), Gaps = 43/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------------- 316
            PT  Q+ ++  +       N    +     GSGKT   L  + +               
Sbjct: 165 KPTPVQKYSVPIV------ANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQG 218

Query: 317 ---AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                +A   AVIMAP   LA Q ++  KK+T  + +   ++ G  P  ++ + +ER   
Sbjct: 219 SFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIER--- 275

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  K+ L  V     DE  R          Q         MT 
Sbjct: 276 -GCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEP--QIRHIVEDCDMTP 332

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++    DI  +  +      I   +  +    E I +  + +    K   +
Sbjct: 333 VGERQTLMFSATFPADIQHLA-RDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSAL 391

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +    +         + + ++              IHG  +  ++E  + +F++G  
Sbjct: 392 LDLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAA 451

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+AT V   G+D+ + + +I  +        +H++ GR GR          ++   S 
Sbjct: 452 TLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRI-GRTGRAGNTGLATAFFNSENSN 510

Query: 603 NSYTRLSVLKNTE 615
                  +L    
Sbjct: 511 IVKGLHEILTEAN 523


>gi|323302935|gb|EGA56739.1| Ded1p [Saccharomyces cerevisiae FostersB]
          Length = 604

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 130/373 (34%), Gaps = 43/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------------- 316
            PT  Q+ ++  +       N    +     GSGKT   L  + +               
Sbjct: 164 KPTPVQKYSVPIV------ANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQG 217

Query: 317 ---AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                +A   AVIMAP   LA Q ++  KK+T  + +   ++ G  P  ++ + +ER   
Sbjct: 218 SFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIER--- 274

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  K+ L  V     DE  R          Q         MT 
Sbjct: 275 -GCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEP--QIRHIVEDCDMTP 331

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++    DI  +  +      I   +  +    E I +  + +    K   +
Sbjct: 332 VGERQTLMFSATFPADIQHLA-RDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSAL 390

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +    +         + + ++              IHG  +  ++E  + +F++G  
Sbjct: 391 LDLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAA 450

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+AT V   G+D+ + + +I  +        +H++ GR GR          ++   S 
Sbjct: 451 TLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRI-GRTGRAGNTGLATAFFNSENSN 509

Query: 603 NSYTRLSVLKNTE 615
                  +L    
Sbjct: 510 IVKGLHEILTEAN 522


>gi|302038481|ref|YP_003798803.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
 gi|300606545|emb|CBK42878.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
          Length = 442

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 142/366 (38%), Gaps = 46/366 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA-MAAAVEAG--------- 321
           +PT  Q +AI   L+          + Q   GSGKTL  LI  +  AV+ G         
Sbjct: 24  APTPIQSAAIPLALEGRD------LLAQAKTGSGKTLAFLIPLIERAVKEGWKPAGSARS 77

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+++AP   LA Q    ++KY   +   + +  G +P     +AL +       I+IG
Sbjct: 78  PRALVLAPTRELALQIEMELRKYAPPSVTSLAV-YGGVPIERHYRALRQPPM----IVIG 132

Query: 382 THALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPI 431
           T     D      +    +  V++DE  +   +  L+  Q+      +    +L +AT  
Sbjct: 133 TPGRLLDVAGTRHLDLRGIEYVVMDEADQMLDRGFLRDIQRILQLLPSQRQTMLFSATFS 192

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKT-----VIIPINRIDEVIERLKVVLSEGKKAY 486
           P  L L      + ++    P    P        V+   +   ++I  L      G ++ 
Sbjct: 193 PEILTLAESMLKNPARTAVDPGVNTPTTITHAYYVVPSESSRVQLIHTLLQSPESGDQSM 252

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C         + +  V+R  +      +S+  I G  S   +E  + +F++G  + L+
Sbjct: 253 VFC---------DQKYKVKRLAARLGGEPASVGAITGNHSQAQRERTLTAFRSGRLRTLV 303

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV   S +I         + +H+  GR GR E   + +L+  P        
Sbjct: 304 ATDVAARGLDVPSVSQVIHYELPGNPTSYVHR-TGRTGRAERSGATLLILSPKEEHEYLA 362

Query: 607 RLSVLK 612
            +  L+
Sbjct: 363 MVRRLR 368


>gi|291242437|ref|XP_002741112.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Saccoglossus kowalevskii]
          Length = 398

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 133/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ A++ +++          I Q   G+GKT    I++   ++      QA+I++
Sbjct: 47  KPSAIQQRAVRPVVKGRDV------IAQAQSGTGKTATFSISILQTLDTQVRETQALILS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        +      G        + L+       H++ GT     D
Sbjct: 101 PTRELAVQIQKVILALGDYMSVQCHSCIGGTNIGEDIRKLDYGQ----HVVSGTPGRVFD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++         A  V+L +AT     L +T
Sbjct: 157 MIRRRNLRTRAIKLLVLDEADEMLNKGFKEQIYDVYRYLPPATQVILFSATLPHEILEMT 216

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                +  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 217 HKFMTEPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 269

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   +++++M  F++G  ++LI T V   GID
Sbjct: 270 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGASRVLITTDVWARGID 329

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S++I  +  +     +H++ GR GR       I        +             D
Sbjct: 330 VQQVSLVINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKSDDIRILRDIEQYYSTQID 388

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 389 EMPMNVADL 397


>gi|259149685|emb|CAY86489.1| Ded1p [Saccharomyces cerevisiae EC1118]
          Length = 604

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 130/373 (34%), Gaps = 43/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------------- 316
            PT  Q+ ++  +       N    +     GSGKT   L  + +               
Sbjct: 164 KPTPVQKYSVPIV------ANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQG 217

Query: 317 ---AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                +A   AVIMAP   LA Q ++  KK+T  + +   ++ G  P  ++ + +ER   
Sbjct: 218 SFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIER--- 274

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  K+ L  V     DE  R          Q         MT 
Sbjct: 275 -GCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEP--QIRHIVEDCDMTP 331

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++    DI  +  +      I   +  +    E I +  + +    K   +
Sbjct: 332 VGERQTLMFSATFPADIQHLA-RDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSAL 390

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +    +         + + ++              IHG  +  ++E  + +F++G  
Sbjct: 391 LDLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAA 450

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+AT V   G+D+ + + +I  +        +H++ GR GR          ++   S 
Sbjct: 451 TLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRI-GRTGRAGNTGLATAFFNSENSN 509

Query: 603 NSYTRLSVLKNTE 615
                  +L    
Sbjct: 510 IVKGLHEILTEAN 522


>gi|225627526|ref|ZP_03785563.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo]
 gi|225617531|gb|EEH14576.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo]
          Length = 549

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 143/393 (36%), Gaps = 40/393 (10%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R   D   A  +  + + K+        + + G + + +       P   Q  AI   L
Sbjct: 78  RRFKADRECAVPLKEIELTKENTGG-FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQL 136

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
           +          +     GSGKT    + +   +            +A+I+AP   LA Q 
Sbjct: 137 EGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQI 190

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+  +++  I   ++ G + +  + K +         ++I T     D +       
Sbjct: 191 EQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATPGRLTDLMRDGLVDL 246

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISK 447
            Q   L+L   D     G    +K   KAT       L +AT       L      D  +
Sbjct: 247 SQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVR 306

Query: 448 ITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P G     I  V+ P+   ++      ++     ++  +  + +   ++  R    
Sbjct: 307 VEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGADAVVRH--- 363

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 E     +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV  +S ++ 
Sbjct: 364 -----LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGSSHVVN 418

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +        +H++ GR GR     + I LY P
Sbjct: 419 YDPPDEPETYVHRI-GRTGRNGASGASITLYDP 450


>gi|190572660|ref|YP_001970505.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia
           K279a]
 gi|190010582|emb|CAQ44191.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia
           K279a]
          Length = 470

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 65/372 (17%), Positives = 131/372 (35%), Gaps = 38/372 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----------EAGG 322
           PT  Q+ AI   L           +     G+GKT    + +   +              
Sbjct: 24  PTPIQQQAIPLALAGRD------LLAGAQTGTGKTAAFGLPLLQHLGTASQEVRSGPRKP 77

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+AP   LA Q ++ ++ Y++  +I    I G +   ++   L R       +++  
Sbjct: 78  RALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLDILRR----GVDLLVAC 133

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D ++   + L  ++        + L +    +   +L        +TL+ ++  +
Sbjct: 134 PGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQNRQTLLFSATFE 193

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
            +I ++      R P +  + P N + E I      +  G+K   +   + +        
Sbjct: 194 DNIRQLA-LEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLHLLAQDSREQTLV 252

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   ++  +  E      A IHG  S   +   +  FK G   +L+AT +   GID
Sbjct: 253 FARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVLVATDIAARGID 312

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           + +   +I  +        +H++ GR GR       I L      K     + +L     
Sbjct: 313 INELPKVINFDLPMVAEDYVHRI-GRTGRNGATGQAISLVAQDEVKLLRAIVRLLG---- 367

Query: 617 GFLIAEEDLKQR 628
                  D+  R
Sbjct: 368 ------RDMDIR 373


>gi|297582584|ref|YP_003698364.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297141041|gb|ADH97798.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
           MLS10]
          Length = 483

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 73/352 (20%), Positives = 131/352 (37%), Gaps = 34/352 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAP 329
           PT  Q+  I   +++         ++    G+GKT    I +   V   E   QA+I++P
Sbjct: 27  PTDVQKQVIPLAMENKDV------LVTSQTGTGKTASYAIPICDTVDWEENRPQALILSP 80

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E I    +  +I    + G  P   ++  L++    + H+++GT     D 
Sbjct: 81  TRELAVQIQEDITNIGRFRRIKATALYGQEPVNKQKLELKQ----KTHVVVGTPGRVLDH 136

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATP--IPRTLVL 437
           I+   L+L  +        D+    G   ++   L          L +AT     R L  
Sbjct: 137 IKKGTLMLNRIEHLVIDEADQMLDMGFIDQVEAILASLPKERTTSLFSATMRNEIRALAG 196

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
             +   D   I ++      I   +I +   +++     V + E   +  I    +E   
Sbjct: 197 RHMNAPDQIAIKQETVAADTIDQSVIHVTNKEKLQLLQDVTVVENPDSCLIFCNTQES-- 254

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                 V+   +           IHG +   ++ SVM++FK G+ + LIAT V   GID+
Sbjct: 255 ------VDLLETSLNKEGYRARKIHGGLPQKERFSVMEAFKRGSFRYLIATNVAARGIDI 308

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
              S++I  +      + +H+  GR GR  +    I   +            
Sbjct: 309 DSVSLVINYDVPFEKESYVHR-TGRTGRAGKAGKAITFVNNREKSAIRELER 359


>gi|160380641|sp|A6ZP47|DED1_YEAS7 RecName: Full=ATP-dependent RNA helicase DED1
 gi|151945294|gb|EDN63537.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190407515|gb|EDV10782.1| hypothetical protein SCRG_01592 [Saccharomyces cerevisiae RM11-1a]
 gi|207341041|gb|EDZ69208.1| YOR204Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256269590|gb|EEU04872.1| Ded1p [Saccharomyces cerevisiae JAY291]
 gi|323335425|gb|EGA76711.1| Ded1p [Saccharomyces cerevisiae Vin13]
 gi|323352139|gb|EGA84676.1| Ded1p [Saccharomyces cerevisiae VL3]
          Length = 604

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 130/373 (34%), Gaps = 43/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------------- 316
            PT  Q+ ++  +       N    +     GSGKT   L  + +               
Sbjct: 164 KPTPVQKYSVPIV------ANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQG 217

Query: 317 ---AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                +A   AVIMAP   LA Q ++  KK+T  + +   ++ G  P  ++ + +ER   
Sbjct: 218 SFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIER--- 274

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  K+ L  V     DE  R          Q         MT 
Sbjct: 275 -GCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEP--QIRHIVEDCDMTP 331

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++    DI  +  +      I   +  +    E I +  + +    K   +
Sbjct: 332 VGERQTLMFSATFPADIQHLA-RDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSAL 390

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +    +         + + ++              IHG  +  ++E  + +F++G  
Sbjct: 391 LDLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAA 450

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+AT V   G+D+ + + +I  +        +H++ GR GR          ++   S 
Sbjct: 451 TLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRI-GRTGRAGNTGLATAFFNSENSN 509

Query: 603 NSYTRLSVLKNTE 615
                  +L    
Sbjct: 510 IVKGLHEILTEAN 522


>gi|149926712|ref|ZP_01914972.1| Helicase [Limnobacter sp. MED105]
 gi|149824641|gb|EDM83857.1| Helicase [Limnobacter sp. MED105]
          Length = 539

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 72/393 (18%), Positives = 138/393 (35%), Gaps = 46/393 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             +   I + I       PT  Q  AI  ++        +  +     G+GKT    + +
Sbjct: 25  FALHPDIQKAIDAQGYTQPTPIQAKAIPVVMTG------VDVMGAAQTGTGKTAGFSLPI 78

Query: 315 AAAVEA-----------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
              +               +A+I+ P   LA Q    +  Y + T +   ++ G +    
Sbjct: 79  LNRLMPLATENTSPARHPVRALILTPTRELADQVAANVHTYAKFTPLRSTVVYGGVDINP 138

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK- 417
           + + L R       ++I T     D +Q   + L  V     DE  R      L   Q+ 
Sbjct: 139 QIQTLRR----GVELVIATPGRLLDHVQQKSINLGQVQVLVLDEADRMLDMGFLPDLQRI 194

Query: 418 ----ATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
                     LL +AT  P  + L  + +    + ++  + A  + IK VI  ++  ++ 
Sbjct: 195 INLLPKTRQNLLFSATFSPEIQKLAKSFMVSPTLIEVARRNATSENIKQVIFALDSEEDK 254

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
              +  ++     +  I         SN +    R     E    S   IHG  + I++ 
Sbjct: 255 RMAVCHLIQSKALSQVIVF-------SNTKLGTARLARHLEKEGVSSTAIHGDKTQIERT 307

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             +++FK G   +L+AT V   G+D+ D   +I  +        +H++ GR GR     +
Sbjct: 308 KSLEAFKAGEVTVLVATDVAARGLDIADLPCVINYDLPTTPEDYVHRI-GRTGRAGAKGT 366

Query: 592 CILLYHPPLSKNSYTRLSVL-----KNTEDGFL 619
                     +       ++     +   +GF+
Sbjct: 367 AYSFVVKRDERALKDIEKLIGKAFVREELEGFV 399


>gi|6324778|ref|NP_014847.1| Ded1p [Saccharomyces cerevisiae S288c]
 gi|118411|sp|P06634|DED1_YEAST RecName: Full=ATP-dependent RNA helicase DED1; AltName: Full=DEAD
           box protein 1
 gi|3647|emb|CAA40546.1| Ded1p (Spp81p) [Saccharomyces cerevisiae]
 gi|1420479|emb|CAA99419.1| DED1 [Saccharomyces cerevisiae]
 gi|285815083|tpg|DAA10976.1| TPA: Ded1p [Saccharomyces cerevisiae S288c]
          Length = 604

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 130/373 (34%), Gaps = 43/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------------- 316
            PT  Q+ ++  +       N    +     GSGKT   L  + +               
Sbjct: 164 KPTPVQKYSVPIV------ANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQG 217

Query: 317 ---AVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                +A   AVIMAP   LA Q ++  KK+T  + +   ++ G  P  ++ + +ER   
Sbjct: 218 SFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIER--- 274

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T     D ++  K+ L  V     DE  R          Q         MT 
Sbjct: 275 -GCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEP--QIRHIVEDCDMTP 331

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++    DI  +  +      I   +  +    E I +  + +    K   +
Sbjct: 332 VGERQTLMFSATFPADIQHLA-RDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSAL 390

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +    +         + + ++              IHG  +  ++E  + +F++G  
Sbjct: 391 LDLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAA 450

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+AT V   G+D+ + + +I  +        +H++ GR GR          ++   S 
Sbjct: 451 TLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRI-GRTGRAGNTGLATAFFNSENSN 509

Query: 603 NSYTRLSVLKNTE 615
                  +L    
Sbjct: 510 IVKGLHEILTEAN 522


>gi|326534222|dbj|BAJ89461.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 130/348 (37%), Gaps = 43/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 63  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 116

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 117 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS----GVHVVVGTPGRVFD 172

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L   
Sbjct: 173 MLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEAL--- 229

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKKE 497
                   +IT K    KP++ ++       E I++  V +  E  K   +C   E    
Sbjct: 230 --------EITRKFMN-KPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAI 280

Query: 498 S------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +      N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++
Sbjct: 281 TQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 340

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             GIDV   S++I  +        LH++ GR GR       I      
Sbjct: 341 ARGIDVQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRE 387


>gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 427

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 66/338 (19%), Positives = 121/338 (35%), Gaps = 26/338 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q+ AI  +LQ          +     G+GKT    + M   +           +A
Sbjct: 23  TPSPIQQKAIPVVLQGKDV------LASAQTGTGKTAGFTLPMIHRLINNPKQGRRKIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E + +Y++   I   +I G + Q  + + L +       I++ T  
Sbjct: 77  LVLTPTRELAAQIQENVLEYSKYVDIKSMVIFGGVNQNPQVRTLRQ----GVDILVATPG 132

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D      L L  V E        R+           +L       + L+ ++  + D
Sbjct: 133 RLLDLQNQGLLSLSDV-EFLVLDEADRMLDMGFIHDIKKVLKMVPAKRQNLLFSATFNTD 191

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----- 499
           I K         P+     P N   E +++    + + +K   +   I E          
Sbjct: 192 IKKFASS-ILTNPVLVEATPENTTAEKVDQKSYRVDKSRKTEMLIKFIREGNWDQVLVFT 250

Query: 500 -FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +    R +   E    S A IHG  +   +   +  FK+G  ++L+AT +   G+D+ 
Sbjct: 251 RTKHGANRLSQKLEKDGISSAAIHGNKTQNARVKALAGFKSGKVRVLVATDIAARGLDIP 310

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
               +I     +     +H++ GR GR       I L 
Sbjct: 311 LLPYVINYELPNVPEDYVHRI-GRTGRAGASGQAISLV 347


>gi|304409413|ref|ZP_07391033.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307303771|ref|ZP_07583524.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304351931|gb|EFM16329.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306912669|gb|EFN43092.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 411

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 128/358 (35%), Gaps = 43/358 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           L ++ +  PT  Q  AI  IL       +   +     G+GKT    + +   + A    
Sbjct: 16  LASLGYESPTPIQLEAIPAILA------KRDVMAGAQTGTGKTAAFALPILHHLLALSPL 69

Query: 321 -------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                    +A+++ P   LA Q  +   KY + T I V I  G +    +        +
Sbjct: 70  QELTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAV----FN 125

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHV 423
               ++I T     D ++   L L  +        D     G    ++  L Q  +    
Sbjct: 126 AGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQT 185

Query: 424 LLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           LL +AT       L  T L D  + ++ ++      I+ V+  ++   +      +V S+
Sbjct: 186 LLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDADRKTELVSHLVRSK 245

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 I  +         +  V++               HG +S   +E V+  FK G 
Sbjct: 246 NWHQVLIFSRT--------KQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGK 297

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            ++L+AT V   G+D+V+   +I           +H++ GR GR       I L+   
Sbjct: 298 IQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRI-GRTGRAGSAGLAITLFSQE 354


>gi|294783794|ref|ZP_06749118.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp.
           1_1_41FAA]
 gi|294480672|gb|EFG28449.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp.
           1_1_41FAA]
          Length = 529

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 126/343 (36%), Gaps = 35/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SPT  Q   I  +L     KN    I Q   G+GKT    + +    E      QA+++ 
Sbjct: 30  SPTPIQRLTIPALL-----KNDKDIIGQAQTGTGKTAAFSLPIIENFETSDHHIQAIVLT 84

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E +   + + ++ V  + G      +RK ++        +++GT     D
Sbjct: 85  PTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKT----GVDVVVGTPGRVID 140

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLT 438
            I+   L L  +        DE    G  + ++     T     +L  +AT  P  + + 
Sbjct: 141 LIERKLLKLNSLKYFVLDEADEMLNMGFIEDIEKILTFTNDDKRMLFFSATMPPEIMKIA 200

Query: 439 SLGDIDISKITEKPAGRKPIKTVII--PINRIDEVIERLKVV-LSEGKKAYWICPQIEEK 495
                +   +  K        T  I   +N  D+     +++ L++       C    + 
Sbjct: 201 KTHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGIIFCRTKTDV 260

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            E   R     +++           +HG +    +E  +  FK     +L+AT V   GI
Sbjct: 261 NEIVGRLNDRGYDA---------EGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGI 311

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           D+ D S +I         + +H++ GR GR  +  + I    P
Sbjct: 312 DINDLSHVINYAVPQEVESYVHRI-GRTGRAGKEGTAITFITP 353


>gi|256369477|ref|YP_003106985.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|255999637|gb|ACU48036.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
          Length = 535

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 142/393 (36%), Gaps = 40/393 (10%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R   D   A  +  + + K+        + + G + + +       P   Q  AI   L
Sbjct: 64  RRFKADRECAVPLKEIELTKENTGG-FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQL 122

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
           +          +     GSGKT    + +   +            +A+I+AP   LA Q 
Sbjct: 123 EGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQI 176

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+  +++  I   ++ G + +  + K +         ++I T     D +       
Sbjct: 177 EQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATPGRLTDLMRDGLVDL 232

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISK 447
            Q   L+L   D     G    +K   KAT       L +AT       L      D  +
Sbjct: 233 SQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVR 292

Query: 448 ITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P G     I  V+ P+   ++      ++     ++  +  + +   ++  R    
Sbjct: 293 VEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGADAVVRH--- 349

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 E     +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV   S ++ 
Sbjct: 350 -----LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +        +H++ GR GR     + I LY P
Sbjct: 405 YDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9]
 gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
 gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
          Length = 478

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 125/368 (33%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAKAIPVVLSGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATP 430
            T     D +Q           L+L   D     G    L+            LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    A    +  ++  +   D+    +K++     K   +
Sbjct: 203 SPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      A IHG  S  ++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 373

Query: 609 SVLKNTED 616
            ++K T  
Sbjct: 374 KLIKRTLS 381


>gi|148560232|ref|YP_001258986.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|161619002|ref|YP_001592889.1| DEAD/DEAH box helicase domain-containing protein [Brucella canis
           ATCC 23365]
 gi|254701799|ref|ZP_05163627.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|256061140|ref|ZP_05451294.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|148371489|gb|ABQ61468.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
 gi|161335813|gb|ABX62118.1| DEAD/DEAH box helicase domain protein [Brucella canis ATCC 23365]
          Length = 535

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 142/393 (36%), Gaps = 40/393 (10%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R   D   A  +  + + K+        + + G + + +       P   Q  AI   L
Sbjct: 64  RRFKADRECAVPLKEIELTKENTGG-FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQL 122

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
           +          +     GSGKT    + +   +            +A+I+AP   LA Q 
Sbjct: 123 EGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQI 176

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+  +++  I   ++ G + +  + K +         ++I T     D +       
Sbjct: 177 EQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATPGRLTDLMRDGLVDL 232

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISK 447
            Q   L+L   D     G    +K   KAT       L +AT       L      D  +
Sbjct: 233 SQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVR 292

Query: 448 ITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P G     I  V+ P+   ++      ++     ++  +  + +   ++  R    
Sbjct: 293 VEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGADAVVRH--- 349

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 E     +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV   S ++ 
Sbjct: 350 -----LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +        +H++ GR GR     + I LY P
Sbjct: 405 YDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|121706879|ref|XP_001271659.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus clavatus
           NRRL 1]
 gi|134034088|sp|A1CH78|DED1_ASPCL RecName: Full=ATP-dependent RNA helicase ded1
 gi|119399807|gb|EAW10233.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus clavatus
           NRRL 1]
          Length = 681

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 59/379 (15%), Positives = 135/379 (35%), Gaps = 54/379 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGGQA------ 324
           +PT  Q+ +I  +   M+ ++ M        GSGKT   L  +   A + G  A      
Sbjct: 211 TPTPVQKYSIPIV---MNGRDLM---ACAQTGSGKTGGFLFPILSQAFQKGPSAVPAQAS 264

Query: 325 ---------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                          +I+AP   L  Q ++  +K+   + +   ++ G      + + +E
Sbjct: 265 GQMSYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIE 324

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP 421
           R       +++ T     D I+  +        L+L   D     G + +++   +    
Sbjct: 325 R----GCDLLVATPGRLVDLIERGRISLVNINYLVLDEADRMLDMGFEPQIRRIVEGED- 379

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
               M +    +TL+ ++    DI  +  +   +  +   +  +    E I +    + +
Sbjct: 380 ----MPSVNERQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEYVED 434

Query: 482 GKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             K   +   +               + + +  +    +       IHG  +  ++E  +
Sbjct: 435 VDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLINQRFPATAIHGDRTQRERERAL 494

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F++  C +L+AT V   G+D+ + + +I  +        +H++ GR GR         
Sbjct: 495 EMFRSARCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGIATA 553

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++          + +LK 
Sbjct: 554 FFNRGNRGVVRELIDLLKE 572


>gi|317493632|ref|ZP_07952053.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918575|gb|EFV39913.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 636

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 83/413 (20%), Positives = 152/413 (36%), Gaps = 48/413 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LTDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLHNIDPSLKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  + ++   + V  + G      R     R       I++
Sbjct: 75  PQVLVLAPTRELAVQVSEAMADFAKHMNGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAQHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S IT +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTVFGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     SS A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERSGYSSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVDRISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIA-EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
                ++K T     I   E L QR+  +     Q    +   +  + +  LL
Sbjct: 358 RNIERIMKLTIPEVEIPNAELLGQRRLAKFAAKVQ---QQLESSDLDKYRDLL 407


>gi|283788210|ref|YP_003368075.1| ATP-dependent RNA helicase (DEAD-box protein) [Citrobacter
           rodentium ICC168]
 gi|282951664|emb|CBG91364.1| ATP-dependent RNA helicase (DEAD-box protein) [Citrobacter
           rodentium ICC168]
          Length = 626

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 164/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAQIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 TAE---GEELDLETLAAALLKMA 432


>gi|66819701|ref|XP_643509.1| hypothetical protein DDB_G0275443 [Dictyostelium discoideum AX4]
 gi|74897315|sp|Q553B1|DDX46_DICDI RecName: Full=ATP-dependent RNA helicase ddx46; AltName:
           Full=ATP-dependent RNA helicase helB1; AltName:
           Full=DEAD box protein 46
 gi|60471516|gb|EAL69472.1| hypothetical protein DDB_G0275443 [Dictyostelium discoideum AX4]
          Length = 1151

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 66/381 (17%), Positives = 142/381 (37%), Gaps = 40/381 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +    +L+   +  PT  Q   I  I+           I     GSGKTL  L+ M   
Sbjct: 517 TEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRD------LIGIARTGSGKTLAFLLPMFRH 570

Query: 318 VEAGGQ--------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           + A  +        A+IM+P   LA Q +   KK+++   +    + G    + +   L+
Sbjct: 571 ILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELK 630

Query: 370 RIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           R     A I++ T     D +           ++  +++DE  R                
Sbjct: 631 R----GADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRM------FDMGFGPQI 680

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT---VIIPINRIDEVIERLKVV 478
           + ++ +  P  +T++ ++     +  + +K   +          I  + I++ +E     
Sbjct: 681 NCIVDSIRPDRQTIMFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTE 740

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
               +    +     + +   F +  E  ++L+   ++S      +HG     D++  + 
Sbjct: 741 TRFRRLIELLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETIS 800

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FKN    +LIAT +   G+D+ D ++++  +        +H++ GR GR     +    
Sbjct: 801 DFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRV-GRTGRAGNRGTAYTF 859

Query: 596 YHPPLSKNSYTRLSVLKNTED 616
             P   + S + +  L+ +  
Sbjct: 860 ITPDEERFSSSIIKALEQSGS 880


>gi|332305039|ref|YP_004432890.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172368|gb|AEE21622.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 459

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 86/463 (18%), Positives = 164/463 (35%), Gaps = 70/463 (15%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L+++ FS  T  Q   +  IL           + +   GSGKT    +A+   ++     
Sbjct: 18  LQSMGFSQMTDIQADTLPAILSGRDV------VAKAKTGSGKTAAFGLALLHNLDVKRFR 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA++M P   LA+Q    I++  +    I V  + G  P   +  +LE      AHII+
Sbjct: 72  VQALVMCPTRELAEQVALEIRRLGRAIHNIKVLTLCGGTPMGPQIGSLEH----GAHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATP 430
           GT     D +   +L L  V        D     G +  +   +         LL +AT 
Sbjct: 128 GTPGRIMDHLYKRRLDLSEVNTLVLDEADRMLDMGFEDEMDAVIKSVPAQRQTLLFSATY 187

Query: 431 IPRTLVLTSLGDIDISKIT-EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                 ++     D  ++T E       I+ V   ++          ++     ++  + 
Sbjct: 188 PESIAAISGQVQKDPLEVTVESTHDTDSIQQVFFEVDDAHRTKATAALLSHYQPESAIVF 247

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +   +      +    S+  +HG +   ++  V+  F N +  +L+AT 
Sbjct: 248 --------CNTKIACQEVADSLQSLGVSVLALHGDLEQRERNQVLVRFANKSVSVLVATD 299

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ + + +I  +        +H++ GR GR E     + L  P     +     
Sbjct: 300 VASRGLDIKEVNAVISYHITPDPEVHIHRI-GRTGRAESKGVALTLVAPDEVARANAIED 358

Query: 610 VLKN-------------------------TEDGFLIAEEDLKQRKEGEILG--IKQSGMP 642
             K                            DG   A    K R  G++LG   KQ+ +P
Sbjct: 359 YQKAKLKWTGIQAMRFHVNRLVQPQYATLCVDGGKKA----KLR-PGDLLGALTKQAEIP 413

Query: 643 KFLIAQPEL--HDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
              I +  +    + + +  +  K  + Q  +   ++G+  ++
Sbjct: 414 GDDIGKIHITEFHAYVAVKTRSVKRAMRQLGE-GKIKGKKFKV 455


>gi|302335558|ref|YP_003800765.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
 gi|301319398|gb|ADK67885.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
          Length = 510

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 67/356 (18%), Positives = 125/356 (35%), Gaps = 36/356 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----AGGQAVIM 327
           PT  Q  +I   L+          I     G+GKT   L+     +       G   +++
Sbjct: 66  PTPVQARSIPPALRGRDV------IAAAQTGTGKTAAFLLPSLDGLPHAQAGQGPLMLVV 119

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LAQQ  E  +     T      + G +    +R+AL R       +++ T     
Sbjct: 120 TPTRELAQQIDEVARAICARTGHTAATVVGGVGYEPQRRALRR----GCDLLVATPGRLI 175

Query: 388 DSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           D +            L+L   D     G     R  + +       LL +AT        
Sbjct: 176 DLMDQGDAHLGEVQVLVLDEADRMLDMGFLPAMRKIVGRTPEGRQTLLFSATLDGHVTSN 235

Query: 438 TSLGDIDISK--ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           T     D  +  I  K    + I+  ++ ++   +      V+ +EG +   +  + + +
Sbjct: 236 TESLVKDPVRVEIAHKGTAAETIEQFVLGVSPEAKHAALTHVLENEGAERVIVFCRGKHR 295

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            +   R +  +          S A IHG  S   +E  +  F+ G+  +L+AT V+  GI
Sbjct: 296 ADGICRRLRRK--------GFSAAPIHGNRSQNQRERALRGFREGSVGVLVATDVLARGI 347

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           D+ D + ++  +        +H++ GR GR  E    +         +      ++
Sbjct: 348 DIPDVAYVVNFDVPGDAEDYIHRI-GRTGRAGESGWALTFVTEDDYLDLRDVEKLM 402


>gi|212693337|ref|ZP_03301465.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855]
 gi|212664102|gb|EEB24674.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855]
          Length = 423

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 127/359 (35%), Gaps = 34/359 (9%)

Query: 271 FSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------Q 323
           F   T  QE  I  IL+          I     G+GKT   L+ +   +  GG       
Sbjct: 21  FEECTPVQEHTIPVILEGKD------LIGVAQTGTGKTAAYLLPVLNQLSKGGYPEDAIN 74

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            VIM+P   LAQQ  + ++ ++         + G        +  + +  G A ++I T 
Sbjct: 75  CVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQEKKGLTLG-ADVVIATP 133

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
                      +   K+   I+DE  R        L    +   + ++   P  R  ++ 
Sbjct: 134 GRLISHLSLGYVDLSKVSFFILDEADRM-------LDMGFSDDIMQIVKYLPKERQTIMF 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S       +   K     P++  +  +++  E I +   +  E +K   I    +++   
Sbjct: 187 SATMPAKIQQLAKTILNNPVEIKL-AVSKPAEKIIQTAYICYERQKLGIIQSLFQDQTPE 245

Query: 499 NF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  V+      +    ++  +H  +    +E +M  FK+G   +LIAT ++ 
Sbjct: 246 RVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVS 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            GID+ D  ++I  +  H     +H++ GR  R       I               + L
Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDYVHRI-GRTARANHDGCAITFVSEKEQTQFKAIENFL 363


>gi|126306068|ref|XP_001381369.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction
           Complex With A Trapped Dead-Box Helicase Bound To Rna
           [Monodelphis domestica]
          Length = 404

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 137/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ A+K I++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 53  KPSAIQQRALKQIIKGRDV------IAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 106

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +      G        + L+R      H++ GT     D
Sbjct: 107 PTRELAVQIQKVLLALGDYMNVQCHACIGGTNVGDDIRQLDRGQ----HVVAGTPGRVFD 162

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   D+    G ++++         +  V+L++AT     L +T
Sbjct: 163 MIRRRSLTTRAIKMLVLDEADQMLDKGFKEQIYDVYRYLPPSIQVVLISATLPHEILEMT 222

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           +    D  +I  +      + IK   + + R +   + +  +       +A   C     
Sbjct: 223 TKFMTDPIRILVRRDELTLEGIKQFFVAVEREEWKFDTVCDLYDSLTITQAVIFCNT--- 279

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+           +++ IHG M   +++ +M  F++G  ++LI+T V   G
Sbjct: 280 ------KRKVDWLTEKMREANFTVSSIHGDMPSRERKFIMKEFRSGVNRVLISTDVWARG 333

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S+II  +  +     +H++ GR GR       I        +            
Sbjct: 334 LDVPQVSLIINYDLPNNRELYIHRI-GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQ 392

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 393 IDEMPMNVADL 403


>gi|90410084|ref|ZP_01218101.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90329437|gb|EAS45694.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 420

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 148/379 (39%), Gaps = 42/379 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
             + +  PT  QE AI  IL           I     G+GKT   ++ +           
Sbjct: 17  AELGYETPTPIQEKAIPVILTGK------NLIAAAQTGTGKTASFVLPLLEKFSDMPPIR 70

Query: 323 ----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               +A+I+ P   LA Q    I +Y+++  +    + G +    +++ L         I
Sbjct: 71  AKRIRALILVPTRELAVQVDANITQYSKHLSLTSLAMYGGVDYKDQKQRLID----GVDI 126

Query: 379 IIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T     D      + + +L ++++DE  R      ++   K       ++   P  R
Sbjct: 127 LVATPGRLLDMYTQRALHFDELEVLVLDEADRMLDMGFIEDINK-------ILERLPKER 179

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
             +L S    D  ++  K A  +P++  + P N     I++  + + + KK+  +   I+
Sbjct: 180 QNLLFSATLSDQVRVLAKTAVERPVEISVSPENTTTPKIDQWLITVDKDKKSALLSHMIK 239

Query: 494 EKKESNFRSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           E +       ++       L             IHG  S   +E +++ FK+G   LL+A
Sbjct: 240 ENEWKQALIFIQTKHGAAKLVGQLEKRGIVAEAIHGGRSQAVREKLLNDFKSGELGLLVA 299

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   GID+ D + +I  +        +H++ GR GR       I       S++ +  
Sbjct: 300 TGIAARGIDIDDLTRVINYDLPDQADDYVHRI-GRTGRAGATGEAISFV----SRDDFRH 354

Query: 608 LSVLKNTEDGFLIAEEDLK 626
           L  +  T  G LI  ++++
Sbjct: 355 LCAI-ETRLGHLIVRKEIE 372


>gi|330445855|ref|ZP_08309507.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490046|dbj|GAA04004.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 455

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 153/377 (40%), Gaps = 41/377 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-------GQA 324
           SPT  QE AI   L     KN M        G+GKT   ++ +   ++ G        +A
Sbjct: 23  SPTPIQEKAIPVALTG---KNLMAA---AQTGTGKTASFVLPILQMLDDGIKVRPKRVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+AP   LA Q  + IK+Y+++  +    + G +    +++ L         I++ T  
Sbjct: 77  LILAPTRELAVQVEDNIKQYSKHLNLKSMAMYGGVDYEPQKRRLIE----GVDILVATPG 132

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I +  + ++++DE  R      ++   K       ++   P+ R  +L S
Sbjct: 133 RLLDMYTQRAIHFDAIEILVLDEADRMLDMGFIEDINK-------IVERLPVDRQNMLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               D  +   K A R PI+  +      D  I++  V + +  K+  +   I+E++   
Sbjct: 186 ATLSDQVRFLAKTAVRNPIEISVAKNASADPKIDQWLVTVDKDMKSSLLSHLIQEQQWEQ 245

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    +  +  E         H   S   +  +++ FKNG  + LIAT V   
Sbjct: 246 ALIFIETKHGAAKLVTQLEKRGIKAESFHSGRSQGVRSQLLEDFKNGKLQYLIATGVASR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+   + ++  +        +H++ GR GR       I       SK+++  L ++++
Sbjct: 306 GIDIEQLTRVVNYDLPFPPEEYVHRI-GRTGRAGASGEAISFV----SKDNFKNLCMIES 360

Query: 614 TEDGFLIAEEDLKQRKE 630
              G LI  ++++  K 
Sbjct: 361 LL-GHLIVRKEIEGFKP 376


>gi|308172326|ref|YP_003919031.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605190|emb|CBI41561.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens DSM 7]
          Length = 511

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 75/376 (19%), Positives = 136/376 (36%), Gaps = 37/376 (9%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           +  + F   T  Q   I   L +         I Q   G+GKT    I +   +      
Sbjct: 35  INRMGFEEATPIQAQTIPLGLLNKDV------IGQAQTGTGKTAAFGIPLVEKMNPESPN 88

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++AP   LA Q  E + K  Q+ +  V  I G      + +AL++      HII+G
Sbjct: 89  IQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKK----NPHIIVG 144

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-- 429
           T     D I    + L  V        DE    G    +   L+   +    LL +AT  
Sbjct: 145 TPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMP 204

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            PI R +    + + +  K+  K      I+   + +    +     +++  +  +   +
Sbjct: 205 APIKR-IAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIV 263

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +       R V E   +L+    ++  I HG ++   +   +  FK G  ++L+AT
Sbjct: 264 FGRTK-------RRVDELAEALNLRGYAAEGI-HGDLTQAKRMVALRKFKEGAIEVLVAT 315

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+   + +   +      + +H++ GR GR  +    +    P          
Sbjct: 316 DVAARGLDISGVTHVYNFDVPQDPESYVHRI-GRTGRAGKTGMAMTFITPREKSMLRAIE 374

Query: 609 SVLKNTEDGFLIAEED 624
              K   D       D
Sbjct: 375 QTTKRKMDRMKEPTLD 390


>gi|282880318|ref|ZP_06289032.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305820|gb|EFA97866.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 583

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 154/445 (34%), Gaps = 59/445 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I  IL+          +     G+GKT   L+ + + +++          +IM
Sbjct: 25  TPVQEKCIPGILKGRDV------LGVAQTGTGKTAAYLLPILSKIDSNNYPDNAINCLIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ +    Q +  +        +R     +     A ++I T     
Sbjct: 79  SPTRELAQQIDQAMQGFGYYLQGVSSVAVYGGNDGNRYDQEVKSLRLGADVVIATPGRLI 138

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRT--L 435
             I    +        +L   D     G    +    K        ++ +AT   +   L
Sbjct: 139 SHINMGNIDMSKISFFVLDEADRMLDMGFADDIMSIAKGLPKTCQTIMFSATMPDKINDL 198

Query: 436 VLTSLGDIDISKIT-EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
             T L +    K+   KPA +      I    +  ++IE    +  +G     I      
Sbjct: 199 ARTLLKNPVEIKLAVSKPAEKIKQCAYICYEAQKLKIIED---IFKKGDLKRVIVF---- 251

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V++  +       + + +H  +    ++ VM +FK+G   +L+AT ++  G
Sbjct: 252 ---CGSKLKVKQVAAALHRMNVNCSEMHSDLEQAQRDEVMLNFKSGQLDVLVATDIVARG 308

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           ID+ D S++I  +  +     +H++ GR  R +     I L     +         L   
Sbjct: 309 IDIDDISMVINYDVPNDAEDYVHRI-GRTARADRDGQAITLVAQDDTYLFEQIEKFLGKE 367

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
            +   + E        GE         P++   +        +     AK I  +D + T
Sbjct: 368 VEKIQLPE------GIGE--------APEYTSGRRP------QRRGTKAKSIRRKDRNQT 407

Query: 675 SVRGQSIRILLYLYQYNEAFQFIRA 699
           + + +  R      Q NE  Q + A
Sbjct: 408 AHKHKPRRQN---DQQNETSQTVDA 429


>gi|241948951|ref|XP_002417198.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223640536|emb|CAX44790.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 399

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 138/385 (35%), Gaps = 42/385 (10%)

Query: 232 ELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQK 291
           E        + + + F+     P  ++G  A          P+  Q  AI  I+      
Sbjct: 13  EFSHKSTKGIKVHRTFESMNLKPDLLKGIYAYGFEA-----PSAIQSRAIMQIISGRDT- 66

Query: 292 NRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNT 348
                I Q   G+GKT    I M   ++      QA+I++P   LA Q    +K      
Sbjct: 67  -----IAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYM 121

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIV 400
            I      G        K L++       I+ GT     D I+   L        IL   
Sbjct: 122 NIHTHACIGGKNVGDDVKKLQQGQ----QIVSGTPGRVIDVIKRRNLQTRNIKVLILDEA 177

Query: 401 DEQHRFGVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTSLGDIDISKITEK--PAGRK 456
           DE    G ++++    K    +  V++++AT     L +TS    D  KI  K       
Sbjct: 178 DELFTKGFKEQIYEIYKHLPPSVQVVVVSATLPREVLEMTSKFTTDPVKILVKRDEISLS 237

Query: 457 PIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHF 514
            IK   +   R D   + L  +       +A   C           +  V       +  
Sbjct: 238 GIKQFYVQCEREDWKFDTLCDLYDNLTITQAVIFCNT---------KLKVNWLADQMKKQ 288

Query: 515 TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574
             ++  +HG M   +++S+M+ F+ G  ++LI+T V   GIDV   S++I  +       
Sbjct: 289 NFTVVAMHGDMKQDERDSIMNEFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKEN 348

Query: 575 QLHQLRGRVGRGEEISSCILLYHPP 599
            +H++ GR GR     + I L    
Sbjct: 349 YIHRI-GRSGRFGRKGTAINLITKD 372


>gi|186683738|ref|YP_001866934.1| DEAD/DEAH box helicase domain-containing protein [Nostoc
           punctiforme PCC 73102]
 gi|186466190|gb|ACC81991.1| DEAD/DEAH box helicase domain protein [Nostoc punctiforme PCC
           73102]
          Length = 443

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 117/348 (33%), Gaps = 41/348 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q  AI  +L           +     G+GKT    + +   + +           
Sbjct: 23  EPTPIQRQAIPAVLSG------SDLLAGAQTGTGKTASFTLPLLHRLSSEKNVKVTSNGY 76

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+ P   LA Q  E +++Y +  Q+   ++ G +    +++ L      +  I+
Sbjct: 77  RPIRALILTPTRELAAQVEESVREYGKYLQLNSMVMFGGVGINLQKQRL----KNRVDIL 132

Query: 380 IGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T     D +Q   L L  +     DE  R      +            ++   P  R 
Sbjct: 133 VATPGRLLDHVQQGTLNLSHIEVLVLDEADRMLDMGFIHDI-------RRILAILPKQRQ 185

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            +L      D  K         P    +   N   E I +    +   KK   +   I  
Sbjct: 186 NLLFFATFSDKIKALAAGLLNNPKMIEVARRNVTAETIAQKIYQVDRDKKRQLLAHLIRR 245

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +R              IHG  S   + + +  FKNG+ ++L+AT
Sbjct: 246 DNWYQVLVFTRTKYGADRLVKQLGEDRIQALAIHGNKSQPVRTNALAKFKNGSLQVLVAT 305

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            +   G+D+ +   ++  +  +     +H++ GR GR       + L 
Sbjct: 306 DIAARGLDISELPHVVNFDLPNVPEDYVHRI-GRTGRAGASGEAVSLV 352


>gi|118366889|ref|XP_001016660.1| P68-like protein, putative [Tetrahymena thermophila]
 gi|89298427|gb|EAR96415.1| P68-like protein, putative [Tetrahymena thermophila SB210]
          Length = 699

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 78/355 (21%), Positives = 130/355 (36%), Gaps = 35/355 (9%)

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQ 346
             I     GSGKTL  ++     + A        G  A+++AP   LA Q  E   K+  
Sbjct: 252 DLIGIAQTGSGKTLSFMLPALVHINAQDPVKPGEGPIALVLAPTRELANQIQEQCFKFGS 311

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVD 401
             +I    + G  P+ ++ K L         I+I T     D ++       ++  +++D
Sbjct: 312 KCKISSVCVYGGAPKIYQEKELRN----GCDIVIATPGRLIDFLESNVIDLKRVTYLVLD 367

Query: 402 EQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           E  R          +K            P  +TL+ ++     + ++        PI   
Sbjct: 368 EADRMLDMGFEPSIRKIVGQIR------PDRQTLMFSATWPQTVRRLALDFCHGDPIHIQ 421

Query: 462 IIPI-----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
           I  +     N ID+ +E +       +    +       K   F    +  + L +   +
Sbjct: 422 IGDMENNVNNDIDQQVEIIDKSQKYDRVKEILSTMTRSDKTIIFTQTKKDCDDLSKALQT 481

Query: 517 ---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL 573
                  IHG  S  D++ VMD FK G    LIAT V   G+DV D  ++I  +      
Sbjct: 482 DNIRNICIHGDKSQRDRDKVMDLFKTGRVNTLIATDVASRGLDVKDIKLVINYDFPKQIE 541

Query: 574 AQLHQLRGRVGRGEEISSCI-LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQ 627
             +H++ GR GR       I  L      K S   + VLK       I+++ L+ 
Sbjct: 542 DYVHRV-GRTGRAGAQGKAISFLDQYEDKKISKELVDVLKQNNQ--EISQDLLEL 593


>gi|85860692|ref|YP_462894.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
 gi|85723783|gb|ABC78726.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
          Length = 423

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 148/381 (38%), Gaps = 48/381 (12%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           +  + + +PT  Q  +I  I+Q       ++ + Q   G+GKT    + +   +  G   
Sbjct: 16  IEALGYKTPTPIQMQSIPAIIQG----RDVMGLAQ--TGTGKTAAFALPILQRLMNGPGK 69

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+AP   LA+Q  E I + +++T++    + G + +  + + L +     A II+
Sbjct: 70  MVRALIVAPTRELAEQINESINEMSRSTKLKSVALYGGVSKNPQIEKLRQ----GAEIIV 125

Query: 381 GTHALFQDSI-----QYYKLILVIVDEQHRFG-----VQQRLKLTQKATAPHVLLMTATP 430
                  D +         + + ++DE  R        + R    Q       LL +AT 
Sbjct: 126 ACPGRLLDLVAQGVADLSGIEVFVLDEADRMFDMGFLPEIRKITKQLPEKRQTLLFSATM 185

Query: 431 I--PRTLVLTSLGDIDISKITEKPAGRKPIKTV---IIPINRIDEVIERLKVVLSEGKKA 485
               R+L    L D    +I        P+ TV   + P+ +  +    +K++     ++
Sbjct: 186 PADIRSLAKDILHDPLTIRI----GNDIPVSTVSHTLYPVEQHLKTALLIKLLKETDTES 241

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             +  + + +          R     +     ++ + G +S   +++ ++ F+ G  ++L
Sbjct: 242 VLVFARTKHRTT--------RVAMQMKKAGFPVSSLQGDLSQNQRQTALNGFREGKYRIL 293

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           IAT +   GIDV   S +I  +      A  H++ GR GR  +                 
Sbjct: 294 IATDIAARGIDVTRISHVINYDMPDTVEAYTHRI-GRTGRATKSGDAFSFVTSEERDLVD 352

Query: 606 TRLSVLKNTEDGFLIAEEDLK 626
           +   VL     G  IA   L+
Sbjct: 353 SIEYVL-----GKQIARCTLE 368


>gi|254706759|ref|ZP_05168587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
          Length = 535

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 143/393 (36%), Gaps = 40/393 (10%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R   D   A  +  + + K+        + + G + + +       P   Q  AI   L
Sbjct: 64  RRFKADRECAVPLKEIELTKENTGG-FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQL 122

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
           +          +     GSGKT    + +   +            +A+I+AP   LA Q 
Sbjct: 123 EGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQI 176

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+  +++  I   ++ G + +  + K +         ++I T     D +       
Sbjct: 177 EQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATPGRLTDLMRDGLVDL 232

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISK 447
            Q   L+L   D     G    +K   KAT       L +AT       L      D  +
Sbjct: 233 SQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVR 292

Query: 448 ITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P G     I  V+ P+   ++      ++     ++  +  + +   ++  R    
Sbjct: 293 VEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGADAVVRH--- 349

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 E     +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV  +S ++ 
Sbjct: 350 -----LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGSSHVVN 404

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +        +H++ GR GR     + I LY P
Sbjct: 405 YDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|52842336|ref|YP_096135.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629447|gb|AAU28188.1| ATP dependent RNA helicase DbpA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 468

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 160/415 (38%), Gaps = 59/415 (14%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q  ++  IL++         I Q   GSGKT    + +   ++      QA+++ P 
Sbjct: 35  TPIQMQSLPIILRNED------MIAQAKTGSGKTAAFALCLLNNLKISFFVVQALVLCPT 88

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA+Q  + I++       + +  ++G +P   +  +L       AHII+GT       
Sbjct: 89  RELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLDSLRH----GAHIIVGTPGRILKH 144

Query: 390 IQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           ++   L L  V     DE  R          +       ++       +TL+ ++    +
Sbjct: 145 LKNASLDLSQVKALVLDEADRMLDMGFFDDIKN------IISVCPKQRQTLLFSATYPEE 198

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-------- 496
           I +++++         V+ P   ID  IE+    +S   + + +   +            
Sbjct: 199 IKRLSKQFMKDPKEVHVVTPPEEID--IEQHFYEVSRHAQKFPLLKSLLLHYQPVSVLIF 256

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +  +  +E  + L     S+IA+ +G M  I+++  +  F N +C +L+AT V   G+D
Sbjct: 257 CNTKQQTIEVTDQLINEGFSAIAL-NGDMEQIERDLAVLRFANQSCSILVATDVAARGLD 315

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN------------S 604
           + + S +I  +        +H++ GR GR       + +  P  ++              
Sbjct: 316 IKELSAVINFDLAFDHDVHIHRI-GRTGRAGSKGIALSIVTPADAQRICAIEDNYPLPIH 374

Query: 605 YTRLSVLKNTEDG--------FLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQP 649
           +  ++ L+N              IA     + + G+ILG   K +G+    I + 
Sbjct: 375 WGNINELENHNTARLVPEMVTLCIASGKKDKIRPGDILGALTKDAGLAGNTIGKI 429


>gi|331679243|ref|ZP_08379915.1| ATP-dependent RNA helicase DeaD [Escherichia coli H591]
 gi|331073308|gb|EGI44631.1| ATP-dependent RNA helicase DeaD [Escherichia coli H591]
          Length = 651

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 43  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 96

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 97  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 152

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 153 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 212

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 213 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 268

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 269 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 320

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 321 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 379

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 380 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 434

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 435 TAE---GEEQDLETLAAALLKMA 454


>gi|324113196|gb|EGC07171.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
          Length = 463

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 135/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 24  LNELGYLTMTPVQAAALPAILAGKDIR------VQAKTGSGKTAAFGLGLLQHIDATLFQ 77

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 78  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGIQRDSLQHA----PHIIV 133

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 134 ATPGRLLDHLQKGTVSLEAL-HTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSAT 192

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +  V E+     S   K   +   +   +    
Sbjct: 193 WPEAIAAISGR-VQRDPLTIEIDSTDALPPV-EQHFYETSSSGKISLLQRLLSVYQPSSC 250

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 251 VVFCNTKKDCQLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILVATDVAARG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R  +    I    P  ++ +     +L+
Sbjct: 311 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGKSGLAISFCAPEEAQRANIISDMLQ 367


>gi|194433764|ref|ZP_03066039.1| cold-shock DEAD box protein A [Shigella dysenteriae 1012]
 gi|194418027|gb|EDX34121.1| cold-shock DEAD box protein A [Shigella dysenteriae 1012]
 gi|332086479|gb|EGI91626.1| cold-shock DEAD box protein A [Shigella dysenteriae 155-74]
          Length = 603

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 TAE---GEELDLETLAAALLKMA 432


>gi|323485086|ref|ZP_08090439.1| hypothetical protein HMPREF9474_02190 [Clostridium symbiosum
           WAL-14163]
 gi|323401642|gb|EGA93987.1| hypothetical protein HMPREF9474_02190 [Clostridium symbiosum
           WAL-14163]
          Length = 484

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 75/350 (21%), Positives = 131/350 (37%), Gaps = 35/350 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           LR + +  PT+ Q+  I  +L+          + +   GSGKT    I +   +   E  
Sbjct: 22  LRLLGYERPTEIQQQVIPAMLEGK------NVVGRAPTGSGKTAAFAIPICDKIIWEENL 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   L  Q  E +    +  ++ V  + G  P   + ++L++    ++HI+ G
Sbjct: 76  PQALILEPTRELTVQVQEEVFHIGRKKRLKVPAVFGGFPIDKQIRSLKQ----KSHIVTG 131

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGV----QQRLKLTQKATAPHVLLMTAT 429
           T     D I+   LIL  V        D     G     +Q L L        +   T  
Sbjct: 132 TPGRVMDHIRRGSLILDKVTCLVIDEADLMLDMGFIDEVKQILDLLSPECRIALFSATLK 191

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P  R    + + D+ +    +  A    I   +   +  ++    L V+  E  +   I 
Sbjct: 192 PEIREFAGSHIHDMVMIFTEQPEAAENAITEELFETDNENKFKVFLNVLYRENPQCCIIF 251

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
               E            F  L  H      +IHG +   ++   +D+F+ G  + LIAT 
Sbjct: 252 CGTREMVNV-------LFQKLRRHRIF-CGMIHGELEQKERLKTIDAFRRGAIRYLIATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   GID+ + + +I  +        +H++ GR GR       + L    
Sbjct: 304 VAARGIDLENITHVINYDFPTGRETYVHRI-GRTGRNGRTGKAVSLVTAE 352


>gi|303314883|ref|XP_003067450.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240107118|gb|EER25305.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 668

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 64/380 (16%), Positives = 134/380 (35%), Gaps = 57/380 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGGQA------ 324
           +PT  Q+ +I  +   M  ++ M        GSGKT   L  +   A + G  A      
Sbjct: 206 TPTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQAFKNGPSAVPTQNA 259

Query: 325 ---------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                          +I+AP   L  Q Y+  +K+   + +   ++ G      + + +E
Sbjct: 260 NQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIE 319

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP 421
           R       +++ T     D I+  +        L+L   D     G + +++   +    
Sbjct: 320 R----GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDM 375

Query: 422 ------HVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                   L+ +AT     + L    L D     +    +  + I   +  +   D+   
Sbjct: 376 PPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDADKRSV 435

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L ++ + G     I            + + +  +    +       IHG  +  ++E  
Sbjct: 436 LLDILHTHGTGLTLIFV--------ETKRMADSLSEFLINQNFPATAIHGDRTQRERERA 487

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           ++ F+NG C +L+AT V   G+D+ + + ++  +        +H++ GR GR        
Sbjct: 488 LEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI-GRTGRAGNTGLST 546

Query: 594 LLYHPPLSKNSYTRLSVLKN 613
             ++          + +LK 
Sbjct: 547 AFFNRGNRGVVRDLIELLKE 566


>gi|239831927|ref|ZP_04680256.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239824194|gb|EEQ95762.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 470

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 130/347 (37%), Gaps = 39/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            P   Q  AI   L+          +     GSGKT    + +   +            +
Sbjct: 44  EPKPIQLQAIPHQLEGRD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTAR 97

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  + I+  +++  I   ++ G + +  + K +         ++I T 
Sbjct: 98  ALILAPTRELAVQIEQTIRNVSKHAHISTALVLGGVSKLSQIKRIAP----GIDVLIATP 153

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPR 433
               D +        Q   L+L   D     G    +K   KAT       L +AT    
Sbjct: 154 GRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHSERQTALFSATMPKE 213

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L      D  ++   P G     I  V+ P++  ++      ++  +  ++  +  +
Sbjct: 214 IASLAGSLLRDPVRVEVAPQGTTAAEITQVVHPVHTKEKRRLLSALLGDKAMRSVIVFTR 273

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +   ++  R          E     +A IHG  S   ++  ++ F++G+ ++LIAT + 
Sbjct: 274 TKHGADAVVRH--------LERDGYEVAAIHGNKSQNARQRALNGFRDGSLRILIATDIA 325

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 326 ARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 371


>gi|242808610|ref|XP_002485202.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218715827|gb|EED15249.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 680

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 59/379 (15%), Positives = 135/379 (35%), Gaps = 54/379 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
           +PT  Q+ +I  +   M+ ++ M        GSGKT   L  + +               
Sbjct: 211 TPTPVQKYSIPIV---MNGRDLM---ACAQTGSGKTGGFLFPILSQAFQTGPSAAPAPAA 264

Query: 319 ---------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                    +A   ++I+AP   L  Q Y+  +K+   + +   ++ G      + + +E
Sbjct: 265 GGNFYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIE 324

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP 421
           R       +++ T     D I+  +        L+L   D     G + +++   +    
Sbjct: 325 R----GCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGED- 379

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
               M      +TL+ ++    DI  +  +   +  +   +  +    E I +    + +
Sbjct: 380 ----MPQVNDRQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQRIEYVED 434

Query: 482 GKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             K   +   +     +         + + +       +       IHG  +  ++E  +
Sbjct: 435 HDKRSVLLDILHTHGTTGLTLIFVETKRMADSLCDFLINQNFPATAIHGDRTQRERERAL 494

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F+NG C +L+AT V   G+D+ + + ++  +        +H++ GR GR         
Sbjct: 495 EMFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI-GRTGRAGNTGIATA 553

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++          + +LK 
Sbjct: 554 FFNRGNRGVVRDLIDLLKE 572


>gi|170698992|ref|ZP_02890050.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170136099|gb|EDT04369.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 472

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 123/357 (34%), Gaps = 29/357 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           SPT  Q+ AI  +L           +     G+GKT    + +   +             
Sbjct: 23  SPTPIQQQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHTYYAEHRGAKRA 76

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R       I++ 
Sbjct: 77  VRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----GVDIVVA 132

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +Q   + L  +D         R+           +L    P  + L+ ++  
Sbjct: 133 TPGRLLDHMQQKTIDLSNLD-ILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATF 191

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-- 499
             +I  + +      P    +   N   E + +    +   +K   +   I E       
Sbjct: 192 SDEIKSLADSLLD-SPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVL 250

Query: 500 ----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +    R          S   IHG  S   +   +  FK+ T ++L+AT +   GI
Sbjct: 251 VFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLVATDIAARGI 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           D+     ++  +  +     +H++ GR GR       + L      +       ++K
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLVCVDEKQLLRDIERLIK 366


>gi|158423990|ref|YP_001525282.1| helicase [Azorhizobium caulinodans ORS 571]
 gi|158330879|dbj|BAF88364.1| helicase [Azorhizobium caulinodans ORS 571]
          Length = 540

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 62/367 (16%), Positives = 139/367 (37%), Gaps = 47/367 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q  AI  IL           I     G+GKT    + +   +    +        
Sbjct: 24  TPTPIQAQAIPAILSGKD------LIGIAQTGTGKTAAFGLPILDHLSRNPRRIEPRSCR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I++P   L+ Q  + + K+ ++ ++   +  G +P   + +AL+R       +++ T 
Sbjct: 78  VLILSPTRELSGQILDNLDKFGRHIRLSTTLAIGGVPMGRQIRALQR----GVDVLVATP 133

Query: 384 ALFQDSIQYYKLILVIV--------DEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPR 433
               D ++   L L  V        D+    G     +  + +     H L  +AT    
Sbjct: 134 GRLMDLVENNALKLDTVEVFVLDEADQMLDMGFVHAIKAIVRRLPHKRHSLFFSAT---- 189

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
             + +++ D+  S +      R P+   + P+ +  + +++  + + +  KA  +   + 
Sbjct: 190 --MPSAIADLAASML------RNPVTVAVTPVAKTADRVDQRVIFVEKPAKAKMLAEVLS 241

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            ++          +   ++   +          IHG  S   ++ V+ +F+ G+ + L+A
Sbjct: 242 TEEVDRALVFTRTKHGADKVVQVLARAGHKAEAIHGNKSQNQRDRVLAAFREGSLRTLVA 301

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   GIDV   S +I  +  +   + +H++ GR  R       I            + 
Sbjct: 302 TDIAARGIDVTGVSHVINYDLPNVPESYVHRI-GRTARAGREGIAISFCDGEERAYLRSI 360

Query: 608 LSVLKNT 614
             +++ T
Sbjct: 361 EKLIRMT 367


>gi|153953072|ref|YP_001393837.1| ATP-dependent RNA helicase [Clostridium kluyveri DSM 555]
 gi|219853723|ref|YP_002470845.1| hypothetical protein CKR_0380 [Clostridium kluyveri NBRC 12016]
 gi|146345953|gb|EDK32489.1| Predicted ATP-dependent RNA helicase [Clostridium kluyveri DSM 555]
 gi|219567447|dbj|BAH05431.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 481

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 137/349 (39%), Gaps = 33/349 (9%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L+ + + SP++ QE  I  IL++         I++   GSGKT    I +   +E     
Sbjct: 19  LQKLGYNSPSEVQEKVIPLILKNKD------IIVKSQTGSGKTAAFAIPICEKIEIEEKN 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  E      +  +I    + G  P + + K L++    + H++ G
Sbjct: 73  PQALVLTPTRELALQIKEDFSYIGRLKKINCTAVFGKEPISLQIKKLKQ----RVHVVTG 128

Query: 382 THALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D I+   L+L      ++DE      +  ++  +       ++ +      TL+
Sbjct: 129 TPGRILDHIERNTLVLEKIKYLVIDEADEMLSRGFMEQVES------VIGSLPKNRTTLL 182

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I K+        P+   +   + + + I ++   +    K   +   I  ++
Sbjct: 183 FSATIPDEILKLCNVYME-NPLNIEVQCESSVKDRITQMYYKIEAPYKFSLLNKIIYTER 241

Query: 497 E------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +  V+      +    S   +HG M   ++   ++SFK G    LI T +
Sbjct: 242 PDSSMIFCRTKKNVDDLVLQMKARKYSCEALHGGMLQNERIDKIESFKRGEFTFLICTDI 301

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              GIDV + + II  +        +H++ GR GR     + I    P 
Sbjct: 302 AARGIDVENITHIINYDIPMERENYIHRI-GRTGRFTSNGTAITFVTPK 349


>gi|125556650|gb|EAZ02256.1| hypothetical protein OsI_24355 [Oryza sativa Indica Group]
          Length = 426

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 130/352 (36%), Gaps = 39/352 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 63  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYAVVECQALVLA 116

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 117 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS----GVHVVVGTPGRVFD 172

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRL-----KLTQKATAPHVLLMTATPIPRTL 435
            ++   L        +L   DE    G + +L            +    +++++   +  
Sbjct: 173 MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQLDFLGACFIDVIQSLLRFMISSSSSRQDP 232

Query: 436 V--LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           V   ++    +  +IT K    KP++ ++    R +  +E    V  E  K   +C   E
Sbjct: 233 VGVFSATMPPEALEITRKFMN-KPVRILV---KRDELTLEFYVNVEKEEWKLDTLCDLYE 288

Query: 494 EKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                      N R  V+           +++  HG M    ++ +M  F++G+ ++LI 
Sbjct: 289 TLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 348

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           T ++  GIDV   S++I  +        LH++ GR GR       I      
Sbjct: 349 TDLLARGIDVQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRD 399


>gi|160874449|ref|YP_001553765.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160859971|gb|ABX48505.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315266685|gb|ADT93538.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 411

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 128/358 (35%), Gaps = 43/358 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           L ++ +  PT  Q  AI  IL       +   +     G+GKT    + +   + A    
Sbjct: 16  LASLGYESPTPIQLEAIPAILA------KRDVMAGAQTGTGKTAAFALPILHHLLALSPL 69

Query: 321 -------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                    +A+++ P   LA Q  +   KY + T I V I  G +    +        +
Sbjct: 70  QELTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAV----FN 125

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHV 423
               ++I T     D ++   L L  +        D     G    ++  L Q  +    
Sbjct: 126 AGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQT 185

Query: 424 LLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           LL +AT       L  T L D  + ++ ++      I+ V+  ++   +      +V S+
Sbjct: 186 LLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDADRKTELVSHLVRSK 245

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 I  +         +  V++               HG +S   +E V+  FK G 
Sbjct: 246 NWHQVLIFSRT--------KQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGK 297

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            ++L+AT V   G+D+V+   +I           +H++ GR GR       I L+   
Sbjct: 298 IQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRI-GRTGRAGSAGLAITLFSQE 354


>gi|53713588|ref|YP_099580.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
 gi|60681868|ref|YP_212012.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|253565577|ref|ZP_04843032.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|265763909|ref|ZP_06092477.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|52216453|dbj|BAD49046.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
 gi|60493302|emb|CAH08086.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|251945856|gb|EES86263.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|263256517|gb|EEZ27863.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|301163360|emb|CBW22910.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
          Length = 418

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 129/361 (35%), Gaps = 34/361 (9%)

Query: 271 FSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------Q 323
           F   T  QE AI  IL+          I     G+GKT   L+ +   +  GG       
Sbjct: 21  FEECTPIQEQAIPVILEGRD------LIAVAQTGTGKTAAFLLPILNKLSEGGHPEDAIN 74

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            VIM+P   LAQQ  + ++ ++    +    + G        +  + +  G A ++I T 
Sbjct: 75  CVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLMLG-ADVVIATP 133

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
                      +   ++   I+DE  R       +   +               +T++ +
Sbjct: 134 GRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYEDIMQIVKY------LPKERQTIMFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I ++            V + +++  E I +   V  E +K   +     E+   
Sbjct: 188 ATMPAKIQQLANTILNNPAE--VKLAVSKPAEKIVQAAYVCYENQKLGIVRSLFAEEVPE 245

Query: 499 NF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  V+      +    ++  +H  +  + +E +M  FK+G   +L+AT ++ 
Sbjct: 246 RVIIFASSKIKVKEVAKALKMMKLNVGEMHSDLEQVQREFIMHEFKSGRINILVATDIVS 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+ D  ++I  +  H     +H++ GR  R       +   +     N     + L+
Sbjct: 306 RGIDIDDIRLVINFDVPHDSEDYVHRI-GRTARANNDGVALTFVNEKEQTNFKNIENFLE 364

Query: 613 N 613
            
Sbjct: 365 K 365


>gi|328849200|gb|EGF98385.1| hypothetical protein MELLADRAFT_22529 [Melampsora larici-populina
           98AG31]
          Length = 815

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 99/522 (18%), Positives = 182/522 (34%), Gaps = 80/522 (15%)

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGK 260
           S  +AF     P + +D         R+A D         + +R Q   +  +  +  G 
Sbjct: 106 SFRKAFYHP--PAEVEDMSEEEAENIRIAMD--------GIKIRGQDCPKPVMKWSWFGL 155

Query: 261 IAQKI--LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  +  ++++ +  P+  Q  A+  I+           I     GSGKTL  L+ M   
Sbjct: 156 HSACLEVIKSLGYQAPSPIQGQAVPAIMSGRDV------IGVAKTGSGKTLAFLLPMFRH 209

Query: 318 VEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           ++         G  A+IM P   LA Q Y+  + + +   +      G  P       ++
Sbjct: 210 IKDQRPLEALEGPIAMIMTPTRELATQIYKEGRPFLKALGLRAACAYGGSPLKDNIADMK 269

Query: 370 RIAHGQAHIIIGTHALFQDS--------IQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
           R     A +I+ T     +         I   ++  +++DE  R           K    
Sbjct: 270 R----GAEVIVCTPGRMIELLTTNSGRVINMRRVTYLVLDEADRMFDMGFEPQVMKIVNQ 325

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV---IIPINRIDEVIERLKVV 478
                   P  +T++ ++     +  +  K   R    TV    +  + I++++E     
Sbjct: 326 IR------PDRQTVLFSATFPKQMEALARKILRRPLEITVGGRSVVASEIEQIVEVRDDS 379

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKES 532
               +    +     E  ES     V+R    ++L             +HG    +D++ 
Sbjct: 380 TKFNRLLEILGRFYNEDSESRSLVFVDRQESADNLFRDLLKKGYPCLSLHGGKEQVDRDQ 439

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           V+  FK G   ++IAT+V   G+DV    ++I  +A +     +H+  GR GR     +C
Sbjct: 440 VIADFKAGVTPIVIATSVAARGLDVKQLKLVINYDAPNHMEDYVHR-AGRTGRAGNKGTC 498

Query: 593 ILLYHPP-----------LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGM 641
           I    P            L  +       LK   D F      L++ K G+      SG 
Sbjct: 499 ITFISPDQERYAIDLLRALVASGAKYPEELKTMSDAF------LEKVKTGK-AQASGSGF 551

Query: 642 PKFLIAQPELHDSLLEIARKDAKHILTQDP---DLTSVRGQS 680
               + + E        A+  A+     +P   D+    GQ+
Sbjct: 552 GGKGLDRLEKDRD----AKSRAERSAYGEPGGEDIVKEEGQT 589


>gi|300823875|ref|ZP_07103999.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 119-7]
 gi|309793740|ref|ZP_07688166.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 145-7]
 gi|300523643|gb|EFK44712.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 119-7]
 gi|308122697|gb|EFO59959.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 145-7]
          Length = 646

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 38  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 91

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 92  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 147

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 263

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 264 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 315

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 316 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 374

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 375 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 429

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 430 TAE---GEEQDLETLAAALLKMA 449


>gi|237710076|ref|ZP_04540557.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|237723636|ref|ZP_04554117.1| ATP-dependent RNA helicase [Bacteroides sp. D4]
 gi|265753725|ref|ZP_06089080.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
 gi|229437984|gb|EEO48061.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4]
 gi|229456169|gb|EEO61890.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|263235439|gb|EEZ20963.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
          Length = 423

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 127/359 (35%), Gaps = 34/359 (9%)

Query: 271 FSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------Q 323
           F   T  QE  I  IL+          I     G+GKT   L+ +   +  GG       
Sbjct: 21  FEECTPVQEHTIPVILEGKD------LIGVAQTGTGKTAAYLLPVLNQLSKGGYPEDAIN 74

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            VIM+P   LAQQ  + ++ ++         + G        +  + +  G A ++I T 
Sbjct: 75  CVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQEKKGLTLG-ADVVIATP 133

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
                      +   K+   I+DE  R        L    +   + ++   P  R  ++ 
Sbjct: 134 GRLISHLSLGYVDLSKVSFFILDEADRM-------LDMGFSDDIMQIVKYLPKERQTIMF 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S       +   K     P++  +  +++  E I +   +  E +K   I    +++   
Sbjct: 187 SATMPAKIQQLAKTILNNPVEIKL-AVSKPAEKIIQTAYICYERQKLGIIQSLFQDQTPE 245

Query: 499 NF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  V+      +    ++  +H  +    +E +M  FK+G   +LIAT ++ 
Sbjct: 246 RVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVS 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            GID+ D  ++I  +  H     +H++ GR  R       I               + L
Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDYVHRI-GRTARANHDGCAITFVSEKEQTQFKAIENFL 363


>gi|145257496|ref|XP_001401758.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Aspergillus
           niger CBS 513.88]
 gi|143359821|sp|A2QIL2|PRP28_ASPNC RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|134058672|emb|CAK38656.1| unnamed protein product [Aspergillus niger]
          Length = 810

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 137/388 (35%), Gaps = 56/388 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------------ 319
            PT  Q +AI   +Q+         I     GSGKT   L+ +   +             
Sbjct: 394 EPTPIQRAAIPIAMQNRD------LIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRK 447

Query: 320 -AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G  A+++AP   LAQQ     KK+T      V  I G      +  +L       A I
Sbjct: 448 ADGPYAIVLAPTRELAQQIEIEAKKFTGPLGFNVVSIVGGHSLEEQAYSLRD----GAEI 503

Query: 379 IIGTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLTQKA------------ 418
           II T     D I+   L+L           D     G ++ +     A            
Sbjct: 504 IIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSED 563

Query: 419 -----TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                     +        +T++ T+     + +I  K   R  I T+      +D V +
Sbjct: 564 AENPLAMSRHINHDQHRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQ 623

Query: 474 RLKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMS 526
           R++++  E K+   +   +   +         N +   +      + +  S   +HG  +
Sbjct: 624 RVEMIAGEDKRKKRLGDILSSGEFRAPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKT 683

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              +E+ + S +NGT  +L+AT +   GIDV D S+++  N      +  H++ GR GR 
Sbjct: 684 QDQREAALASVRNGTTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRI-GRTGRA 742

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNT 614
            +    I       +   Y    +L  +
Sbjct: 743 GKSGVAITFLGNEDADVMYDLKQMLMKS 770


>gi|170719671|ref|YP_001747359.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169757674|gb|ACA70990.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 630

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPAGHPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q ++  K Y ++  ++   I G +    + +A+ +       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNPQIQAIAK----GVDV 132

Query: 379 IIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D      +    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGRVDLAHVEILVLDEADRMLDMGFIHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ + +K     P +  + P N   E IE+    L    K   +   I 
Sbjct: 187 NLLFSATFSKDITDLADK-LLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     E    S A IHG  S   +   +  FK  + ++L+A
Sbjct: 246 LGAWEQVLVFTRTKHGANRLAEYLEKHGLSAAAIHGNKSQNARTKALADFKANSVRVLVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVEEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             V +       IA+ DL
Sbjct: 365 ERVTRQ-----KIADGDL 377


>gi|88705999|ref|ZP_01103707.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
 gi|88699713|gb|EAQ96824.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
          Length = 443

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 122/345 (35%), Gaps = 43/345 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--------GQAV 325
           T  Q+ AI  +L+          +     G+GKT    + M   ++           +A+
Sbjct: 25  TPIQQKAIPLVLEG------SDLLAGAQTGTGKTAGFTLPMLQRLQNKYPGTAKSYPKAL 78

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q +E ++ Y         +I G +    +++ L +       +++ T   
Sbjct: 79  VLTPTRELAAQVHESVRDYGAYLPFKSAVIFGGVSINPQKQKLIK----GVDVVVATPGR 134

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D +Q           L+L   D     G    ++   K               +TL+ 
Sbjct: 135 LLDHVQQRSIDLSKIEILVLDEADRMLDMGFIHDIRRVMKVIPKQ---------RQTLLF 185

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I K+  +     P +  + P N   +++ +    + +G+K   +  QI E   
Sbjct: 186 SATFSNEIKKLASEFLE-NPQQIQVTPQNTATKLVSQRVYPVDKGRKRELLSQQIGEGNW 244

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +    R          S A IHG  S   +   +  FK+G  + L+AT + 
Sbjct: 245 QQVLIFTRTKHGANRLAEQLSKDGISSAAIHGNKSQGARTRALAEFKSGAIRALVATDIA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             GID+     ++     +     +H++ GR  R  +    I L 
Sbjct: 305 ARGIDIDKLPHVVNYELPNVAEDYIHRI-GRTARAGQEGHAISLV 348


>gi|320202076|gb|EFW76651.1| Cold-shock DEAD-box protein A [Escherichia coli EC4100B]
          Length = 629

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 TAE---GEELDLETLAAALLKMA 432


>gi|300937578|ref|ZP_07152392.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|300457386|gb|EFK20879.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
          Length = 457

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAITAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|299067900|emb|CBJ39113.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum CMR15]
          Length = 548

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 128/366 (34%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA---AAVEAGG------ 322
            PT  Q  AI  IL+          +     G+GKT    + +    +AV+         
Sbjct: 23  EPTPIQRQAIPAILKG------GDLLAGAQTGTGKTAGFTLPLLHRLSAVQPNKVQTPNG 76

Query: 323 -----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                +A+++ P   LA Q  E ++ Y +   +   ++ G +    +  AL+R       
Sbjct: 77  MRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKR----GVD 132

Query: 378 IIIGTHALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I++ T     D +         + L+++DE  R      +   +K      +L    P  
Sbjct: 133 IVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRK------ILNILPPKR 186

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           + L+ ++    DI  + ++    +P    +   N   E +E+    +   +K   +   +
Sbjct: 187 QNLLFSATFSDDIRALADRLLD-QPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLV 245

Query: 493 EEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +            +    R              IHG  S   +   +  FK GT ++L+
Sbjct: 246 SDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFKAGTLRVLV 305

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT +   GID+     ++  +  +     +H++ GR GR       I L           
Sbjct: 306 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGAQGEAISLVCVDEHGLLRD 364

Query: 607 RLSVLK 612
              ++K
Sbjct: 365 IERLIK 370


>gi|307730917|ref|YP_003908141.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307585452|gb|ADN58850.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 517

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 120/342 (35%), Gaps = 30/342 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------AVEAGGQ 323
           +PT  Q  AI  +L           +     G+GKT    + +          A  +G +
Sbjct: 23  TPTPIQTQAIPAVLNG------GDLLAGAQTGTGKTAGFTLPILQRLHSMPPVAAASGKR 76

Query: 324 A---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           A   +I+ P   LA Q  E ++ Y +  ++   ++ G +    +  AL+        I++
Sbjct: 77  AVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALKS----GVDIVV 132

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  + E        R+           +L    P  + L+ ++ 
Sbjct: 133 ATPGRLLDHMQQKTIDLSHL-EILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSAT 191

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
              +I  + +      P    +   N   E + +    +   KK   +   I++      
Sbjct: 192 FSDEIKALADNLLD-SPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNWFQV 250

Query: 500 -----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +    R          S   IHG  S   +   +  FK+GT ++L+AT +   G
Sbjct: 251 LVFTRTKHGANRLAEQLSKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAARG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           ID+     ++  +  +     +H++ GR GR       + L 
Sbjct: 311 IDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLV 351


>gi|241148960|ref|XP_002405949.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215493782|gb|EEC03423.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 460

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 135/358 (37%), Gaps = 48/358 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
           +PT  Q       L           +     GSGKTL  ++     +          G  
Sbjct: 112 TPTCIQAQGWPIALSGK------NLVGIAQTGSGKTLGYILPAIIHINHQPYLQRGDGPI 165

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +   ++ + +++    + G  P+  + + +ER +     I I T 
Sbjct: 166 ALVLAPTRELAQQIQQVSSEFGKASRVRSTCVFGGAPKGPQLRDIERGSE----ICIATP 221

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D ++  K+ L               +          L+ +AT       L      
Sbjct: 222 GRLIDFLEAGKVNL---------------RRCTYLPDCQTLMWSATWPKEVRSLAEEFLR 266

Query: 444 DISKIT----EKPAGRK--PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           D  +I     +  A  +   I  V     + D++++  + +L+E +    +         
Sbjct: 267 DYIQINIGALQLCANHRILQIIDVCQETEKEDKLMKLHQEILNEKENKTIVF-------A 319

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              R V +    +  +   +I I HG  +  +++ V++ F++G   +L+AT V   G+DV
Sbjct: 320 ETKRKVDDLTRKMRRYGWPAICI-HGDKTQQERDWVLNEFRSGRAPILVATDVAARGLDV 378

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
            D   +I  +  +     +H++ GR  R  +  +    + P  S+ +   +SVL+   
Sbjct: 379 DDVRFVINYDYPNCSEDYIHRI-GRTARSNKTGTAYTFFTPNNSRQAKELISVLQEAN 435


>gi|167622911|ref|YP_001673205.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167352933|gb|ABZ75546.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 432

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 66/405 (16%), Positives = 132/405 (32%), Gaps = 44/405 (10%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 +   +I + I        T  Q+ AI  + +          +     G+GKT  
Sbjct: 1   MRFESFSFAPEILRAISECGYEKMTPIQQQAIPAVRRGQDV------LASAQTGTGKTAA 54

Query: 310 ALIAMAAAVEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
             + +   +            +A+I+ P   LA Q  + I  Y +   + V  + G +  
Sbjct: 55  FALPILQKMLDNPSTTGRSNARALILTPTRELAAQIADNINDYAKYLDMKVVTVLGGVKM 114

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVD-----EQHRF-----GVQQR 411
             +   L+R     A III T     + I    L L  VD     E  R          +
Sbjct: 115 DSQATKLKR----GADIIIATPGRLLEHIVACNLSLSNVDFLVLDEADRMLDMGFSADIQ 170

Query: 412 LKLTQKATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             L         LL +AT     + L    +   +I    ++      +  V+ P+ +  
Sbjct: 171 KILQAVNKKRQNLLFSATFSTAVKQLANVMMVKPNIIAADKQNTTAVTVSQVVYPVEQRR 230

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           +     +++  +  K   +            R   ++            A++HG  +   
Sbjct: 231 KRELLSELIGKKNWKQVLVFT--------ATRDAADKLEKELNLDGIPTAVVHGEKAQGS 282

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +   +  FK G  ++L+AT V   G+D+     ++  +        +H++ GR GR  + 
Sbjct: 283 RRRALREFKEGKMRVLVATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRI-GRTGRAGKS 341

Query: 590 SSCILLYHPPLSKNSYTRLSVLKN-----TEDGFLIAEEDLKQRK 629
              I        +       ++       +  G+ +   DL  ++
Sbjct: 342 GVAISFVSREEERTLADIEKLIGQQLRRISIPGYEVGSRDLLIKQ 386


>gi|148825485|ref|YP_001290238.1| preprotein translocase subunit SecF [Haemophilus influenzae PittEE]
 gi|229846320|ref|ZP_04466428.1| preprotein translocase subunit SecF [Haemophilus influenzae 7P49H1]
 gi|89892371|gb|ABD78963.1| HI0231-like protein [Haemophilus influenzae]
 gi|148715645|gb|ABQ97855.1| preprotein translocase subunit SecF [Haemophilus influenzae PittEE]
 gi|229810413|gb|EEP46131.1| preprotein translocase subunit SecF [Haemophilus influenzae 7P49H1]
          Length = 613

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 134/364 (36%), Gaps = 36/364 (9%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q++ I  +L           +     GSGKT    + + A +   E   
Sbjct: 21  SDLGFETPSPIQQACIPHLLSG------NDVLGMAQTGSGKTAAFALPLLAQIDPSEKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  +++ +      +  + G      R     R     A +++G
Sbjct: 75  QMLVMAPTRELAIQVADACEQFVKYAHGSRIVTLYGG----QRYDIQLRALKQGAQVVVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 131 TPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMP 190

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I+     ++ + +    L+ +  E   A  I 
Sbjct: 191 EPIRRITKRFMNDPKEVKIKVNNENAPDIEQSCWYVHGVRKNEALLRFLEVEDFDAAIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +NG+  +++AT 
Sbjct: 251 ARTKTGTLD--------ITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S+++  +      + +H++ GR GR       +L   P   +       
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEH 361

Query: 610 VLKN 613
           ++K 
Sbjct: 362 LMKK 365


>gi|323345624|ref|ZP_08085847.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
 gi|323093738|gb|EFZ36316.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
          Length = 548

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 133/359 (37%), Gaps = 40/359 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL      N+   +     G+GKT   L+ + + ++ GG        +IM
Sbjct: 25  TPVQERCIPEIL------NKRDVLGVAQTGTGKTAAYLLPILSMLDDGGYPKDAINCIIM 78

Query: 328 APIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +P   LAQQ  + ++ +    + +    + G        + L+ +  G A ++I T   F
Sbjct: 79  SPTRELAQQIDQAMQGFGYYLSGVSSVAVYGGNDGNRYDQELKSLRLG-ADVVIATPGRF 137

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
              I    +        IL   D     G  + +    K            P  +T++ +
Sbjct: 138 ISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKQLP---------PTCQTIMFS 188

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---K 495
           +     I ++       K   T+ + +++  E I +   V  E +K   I         K
Sbjct: 189 ATMPDKIEELANTLL--KNPVTIKLAVSKPAEKIRQSAYVCYETQKMDIIKNIFNAGDLK 246

Query: 496 KESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +   F    ++   + +           +H  +    ++ +M  FK+G   +++AT +I 
Sbjct: 247 RVIIFSGSKQKVKQITKALQQKNVNCGEMHSDLEQAQRDDMMFKFKSGQLDVIVATDIIS 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            GID+ D +++I  +  H     +H++ GR  R +     I L +             L
Sbjct: 307 RGIDIDDIAMVINYDVPHDAEDYVHRI-GRTARADRDGVAITLINEDDIYYFQQIEKFL 364


>gi|300938072|ref|ZP_07152850.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 21-1]
 gi|300456932|gb|EFK20425.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 21-1]
          Length = 646

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 38  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 91

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 92  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 147

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 263

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 264 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 315

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 316 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 374

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 375 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 429

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 430 TAE---GEELDLETLAAALLKMA 449


>gi|120599366|ref|YP_963940.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146292637|ref|YP_001183061.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120559459|gb|ABM25386.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145564327|gb|ABP75262.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 449

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 136/388 (35%), Gaps = 42/388 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ ++ Q +      +PT  QE  +   L           +     GSGKTL  L+  
Sbjct: 6   FSLDQRLLQSLKHMGITAPTAIQEQTLPIALAGKD------LMASSKTGSGKTLAFLLPA 59

Query: 315 AAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              V       +   + +I+ P   LA Q Y  ++    NTQ     + G      + KA
Sbjct: 60  LQRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKAT 419
           L +    + H I+ T     D ++   L        IL   D     G   +LK   +A 
Sbjct: 120 LAK----EPHFIVATPGRIADHLEQKHLFLNGLELLILDEADRMLDLGFAPQLKTINEAA 175

Query: 420 AP---HVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  L+ +AT        +  T L +     I    +    I   I   + +D    
Sbjct: 176 DHKRRQTLMFSATLDHSEINDIAATLLKNPAHVAIDASHSEHNDIHQRIFLCDHLDHKEA 235

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L  +L +      I            R   ER  +       + A + G +    +  +
Sbjct: 236 LLTRLLQDETHKQVIVFT-------ATRPDTERLAAKLSTQGFATAALSGDLKQAARNQI 288

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           MD F  G  ++L+ T V   G+D+++ S++I  +   F    +H++ GR GR       I
Sbjct: 289 MDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDAI 347

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
            L  P    N       L+ T   F I+
Sbjct: 348 SLVGPKDWDNFKKVQIFLRKT---FEIS 372


>gi|191168055|ref|ZP_03029855.1| cold-shock DEAD box protein A [Escherichia coli B7A]
 gi|218555734|ref|YP_002388647.1| ATP-dependent RNA helicase DeaD [Escherichia coli IAI1]
 gi|260857291|ref|YP_003231182.1| ATP-dependent RNA helicase DeaD [Escherichia coli O26:H11 str.
           11368]
 gi|260869914|ref|YP_003236316.1| ATP-dependent RNA helicase DeaD [Escherichia coli O111:H- str.
           11128]
 gi|293449499|ref|ZP_06663920.1| ATP-dependent RNA helicase DeaD [Escherichia coli B088]
 gi|190901924|gb|EDV61673.1| cold-shock DEAD box protein A [Escherichia coli B7A]
 gi|218362502|emb|CAR00126.1| ATP-dependent RNA helicase [Escherichia coli IAI1]
 gi|257755940|dbj|BAI27442.1| ATP-dependent RNA helicase DeaD [Escherichia coli O26:H11 str.
           11368]
 gi|257766270|dbj|BAI37765.1| ATP-dependent RNA helicase DeaD [Escherichia coli O111:H- str.
           11128]
 gi|291322589|gb|EFE62018.1| ATP-dependent RNA helicase DeaD [Escherichia coli B088]
 gi|323154376|gb|EFZ40577.1| cold-shock DEAD box protein A [Escherichia coli EPECa14]
 gi|323178875|gb|EFZ64451.1| cold-shock DEAD box protein A [Escherichia coli 1180]
 gi|323183117|gb|EFZ68515.1| cold-shock DEAD box protein A [Escherichia coli 1357]
          Length = 629

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 TAE---GEEQDLETLAAALLKMA 432


>gi|296198571|ref|XP_002746771.1| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Callithrix
           jacchus]
          Length = 637

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 67/393 (17%), Positives = 137/393 (34%), Gaps = 42/393 (10%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
             +   ++ + I ++    PT  Q  A   +LQ +        I     G+GKTL  L+ 
Sbjct: 235 AFHYYPEVMENIKKSGFKKPTPIQAQAWPIVLQGID------LIGVAQTGTGKTLCYLMP 288

Query: 314 MAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
               ++              +++ P   LA Q      KY+    +    + G   +  +
Sbjct: 289 GFIHLDLQPTFKGQRNRPGMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQ 347

Query: 365 RKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
            + L +       III T     D      +    +  +++DE  R           K  
Sbjct: 348 IEELRK----GVDIIIATPGRLNDFQMNNFVNLKNITYLVLDEADRMLDMGFEPQIMK-- 401

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERL 475
               +L+   P  +T++ ++     + ++ +       +  V    ++ ++ + + I   
Sbjct: 402 ----ILLDVRPDRQTVMTSATWPRSVHRLAQSYLKEPMLVYVGTLDLVAVSSVKQNIIIT 457

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKES 532
                      ++       K   F S     + L         SI  +HG     D+E 
Sbjct: 458 TEEEKWIHIQTFLQSLSTTDKVIVFVSRKAVADHLSSELILGNMSIESLHGDREQRDREK 517

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            +++FK G  ++LIAT +   G+DV D + +   +        +H++ GR GR       
Sbjct: 518 ALENFKTGKVRILIATDLASRGLDVHDITHVYNFDFPRNIEEYVHRI-GRTGRAGRTGVS 576

Query: 593 ILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
           I        + +   +++L+       I  +DL
Sbjct: 577 ITTMTRNDWRFAPELVNILQRAN---QIIPDDL 606


>gi|260903903|ref|ZP_05912225.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium
           linens BL2]
          Length = 606

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 121/348 (34%), Gaps = 42/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA------AVEAGGQAV 325
           +PT  Q   I  +++          I     G+GKT    +   +          G  A+
Sbjct: 35  TPTPIQAETIPALVEGRDV------IGLAQTGTGKTAAFALPALSDLAEAGRANDGPFAL 88

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++ P   LA Q  E    Y  N     V  I G      +   L+R     A +++GT  
Sbjct: 89  VLTPTRELAIQVAEAFTSYATNLDDFSVLPIYGGQAYGPQLSGLKR----GAQVVVGTPG 144

Query: 385 LFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
              D ++           LIL   DE  + G  + +           +   +    +  +
Sbjct: 145 RVIDHLKKGSLKLGSLRHLILDEADEMLKMGFAEDI---------EEIFSQSGDSRQVAL 195

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     I ++T K     P +  +   ++    I +   ++    K   +   +E ++
Sbjct: 196 FSATMPTSIHRLTGKYLN-NPKEVRVASKSQTGSNIRQRYHMVQHSHKLDALTRILEVEE 254

Query: 497 ES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +   E             + I+G +    +E  +D  +NG   +L+AT V
Sbjct: 255 YEGIIMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILVATDV 314

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              G+DV   ++++  +  H   + +H++ GR GR       IL   P
Sbjct: 315 AARGLDVERITLVVNFDIPHDTESYVHRI-GRTGRAGRSGEAILFVTP 361


>gi|42527612|ref|NP_972710.1| DEAD-box ATP dependent DNA helicase [Treponema denticola ATCC
           35405]
 gi|41818440|gb|AAS12629.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Treponema
           denticola ATCC 35405]
          Length = 570

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 153/435 (35%), Gaps = 57/435 (13%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + ++  + Q +       PT  Q  AI  +L   +       I +   G+GKT    + +
Sbjct: 8   LGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEAN-----VIAKARTGTGKTAAFGLPL 62

Query: 315 AAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
              + +     +A+I+ P   LA Q    ++ +       +  + G      + ++L+  
Sbjct: 63  VQELRSNTGKVRALILVPTRELAVQVAGELESFRIEEYPRIATVYGGAAIGPQLRSLKT- 121

Query: 372 AHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHV 423
                 I++GT     D ++   L        IL   DE    G  + ++          
Sbjct: 122 ---GVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLNMGFIEDIENI-------- 170

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
               A P  R L+ ++     I  I     G   I        R   + E+   V+ EG 
Sbjct: 171 -FSKANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEER-ASLTEQFFWVVREGD 228

Query: 484 KAYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           K   +   I+             +   +      +      A +HG +    +E +++ F
Sbjct: 229 KTEALVRLIDTSPNFYGLVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERF 288

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++   ++L+AT V   GID+   S ++     + G    H++ GR GR       +    
Sbjct: 289 RSKKTRILVATDVAARGIDIEGISHVVNYAIPYDGPTYTHRI-GRTGRAGAAGVAVSFVR 347

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           P    N   R+  L+    G         + KEG+I  I+Q  + +    +      L E
Sbjct: 348 P----NEVKRIEYLRKHARG---------ELKEGKIPSIEQ--VIEIKRTRI-----LKE 387

Query: 658 IARKDAKHILTQDPD 672
            A +  K I  + P+
Sbjct: 388 TAAQIEKRISEEKPE 402


>gi|158514834|sp|A3LS22|RRP3_PICST RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 484

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 67/335 (20%), Positives = 128/335 (38%), Gaps = 21/335 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT  Q  AI   L+          I     GSGKT    I +  ++   +     +++A
Sbjct: 93  KPTPIQSEAIPHALEGKD------IIGLAQTGSGKTAAFAIPILQSLWEAQTPYFGLVLA 146

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E          +    + G M    + + L R    + HIII T     D
Sbjct: 147 PARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMR----KPHIIIATPGRIMD 202

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +++ K   + + +        +L   +       +L    P  RT  L S    +  + 
Sbjct: 203 HLEHTKGFSLKMLKYFVMDEADKLLDLEFGPVLDKIL-KQIPSKRTTYLFSATMTNKIEK 261

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE------KKESNFRS 502
            ++ +   P++  +    +  + + +  +++S+G K  ++   + E         +  R+
Sbjct: 262 LQRASLHNPVRVAVSSKYQTADNLIQSMMLVSDGYKNTYLIHLLNEFVGKSIIIFARTRA 321

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             +R + L      S   +HG ++   +   ++ FK+GT  +LIAT V   G+D+    +
Sbjct: 322 HTQRTSILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDV 381

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +I  +      A +H++ GR  R       I L  
Sbjct: 382 VINYDIPTDSKAYVHRV-GRTARAGRSGKSISLVT 415


>gi|298208437|ref|YP_003716616.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
 gi|83848360|gb|EAP86229.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
          Length = 372

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 75/344 (21%), Positives = 138/344 (40%), Gaps = 35/344 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT+ QE AI  +L+          + Q   G+GKT    + M   + A     QA+++ P
Sbjct: 25  PTEIQEQAIPVLLE-----KPTDFVGQAQTGTGKTAAYGLPMLELINASKNHVQALVLCP 79

Query: 330 IGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q  + + K+T+ + +I  E + G      + KAL+R      HII+ T     D
Sbjct: 80  TRELAMQVSKQLFKFTKYSDKIFSETVYGGAQIDKQIKALQRP----THIIVATPGRLVD 135

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTAT---PIPRTL 435
            ++   + L  V        DE    G ++ L   L+      +  L +AT    I + +
Sbjct: 136 LMKKKVVDLTNVKTVVLDEADEMLSMGFKKDLDTILSALPATKNRWLFSATLPEGIRQII 195

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
                 +    K++ K    K I+   I +   D++   L+ +  +GK+   +       
Sbjct: 196 NSHLSSNAIKIKVSGKNVVNKKIEHKYILVEDADKLTTLLQYLKFKGKERGIVF------ 249

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  +           S   IHG +   +++ VM +FKN + ++L+AT +   GI
Sbjct: 250 --CKTKNTTKTLAKQLIAKNISADAIHGDLLQKERDKVMRAFKNESLRILVATDLTARGI 307

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV D + ++            H+  GR  R  +    + + +  
Sbjct: 308 DVEDLAFVVHYELPSQDEFYTHR-SGRTARAGKEGMSLAIVNSK 350


>gi|319637745|ref|ZP_07992511.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
 gi|317400900|gb|EFV81555.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
          Length = 463

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 128/366 (34%), Gaps = 46/366 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q +AI   L           +     G+GKT   ++     ++    +        
Sbjct: 25  PTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYATSSTSPAMHP 78

Query: 325 ---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++ P   LA Q  + ++ Y +N  +   ++ G +    +   L         I++ 
Sbjct: 79  VRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTADLRAGCE----IVVA 134

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-- 429
           T     D ++           ++L   D     G     R  +         LL +AT  
Sbjct: 135 TVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATFS 194

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P  R L    +   ++ ++  +      ++  II ++ + +     ++++        + 
Sbjct: 195 PPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRNLLERLIVDLHMNQVIVF 254

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + ++  +   R +V R          +   IHG  S   +   +++FK GT ++L+AT 
Sbjct: 255 CKTKQSVDQVTRDLVRR--------HIAAQSIHGDKSQQSRLETLNAFKEGTLRVLVATD 306

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +   +I           +H++ GR GR       I L    + K       
Sbjct: 307 VAARGLDIAELPFVINYELPTQPEDYVHRI-GRTGRAGADGVAISL----MDKTEQKMFE 361

Query: 610 VLKNTE 615
            +K   
Sbjct: 362 AIKELT 367


>gi|81295381|ref|NP_001032278.1| nucleolar RNA helicase 2 [Rattus norvegicus]
 gi|123780397|sp|Q3B8Q1|DDX21_RAT RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
           protein 21; AltName: Full=Gu-alpha; AltName:
           Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
           RNA helicase II; AltName: Full=RH II/Gu
 gi|77748254|gb|AAI05879.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Rattus norvegicus]
 gi|149038676|gb|EDL92965.1| rCG22008, isoform CRA_b [Rattus norvegicus]
          Length = 782

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 143/423 (33%), Gaps = 72/423 (17%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------GQAV 325
             Q      +            I Q   G+GKT    I +   ++ G          Q +
Sbjct: 207 PIQAKTFHHVYSGKD------LIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVL 260

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  +     T+  ++ V    G  P   +   +ER+  G   I++GT   
Sbjct: 261 VLAPTRELANQVSKDFSDITK--KLSVACFYGGTPYGGQ---IERMRSG-IDILVGTPGR 314

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +D +Q  KL        +L  VD+    G   +++              +   P+TL+ 
Sbjct: 315 IKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKD----SEDNPQTLLF 370

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEK 495
           ++     +  + +K       +  +I        I  E L +     ++A  I   I   
Sbjct: 371 SATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVY 430

Query: 496 KESNFR-----SVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                R        +    L ++         +HG +    +E  +  F+NG   +L+AT
Sbjct: 431 SGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVAT 490

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +  +++         + +H+  GR GR      CI  Y            
Sbjct: 491 NVAARGLDIPEVDLVVQSCPPKDVESYIHR-SGRTGRAGRTGVCICFY------------ 537

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
                 ++ + +A+             ++Q    KF          +++ + KDA  +L 
Sbjct: 538 ----QHKEEYQLAQ-------------VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLD 580

Query: 669 QDP 671
             P
Sbjct: 581 SVP 583


>gi|109898646|ref|YP_661901.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109700927|gb|ABG40847.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 426

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 68/385 (17%), Positives = 132/385 (34%), Gaps = 45/385 (11%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                +++  ++ Q I        T  Q+ AI      +  +     +     G+GKT  
Sbjct: 1   MNFSSLDLAPELQQAIDACGYKKMTPIQQQAI------VVARRGRDVLASAQTGTGKTAA 54

Query: 310 ALIAMAAAVEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
             + +   +            +A+I+ P   LA+Q    I  Y + T I V  + G +  
Sbjct: 55  FAVPILQQMLNKPKKTTPGTPRALILTPTRELAEQLATNIANYAKFTDISVTALYGGVKL 114

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGV--QQR 411
             +   L         I+I T     + +    + L  V        D     G     R
Sbjct: 115 GGQASKL----SAGVDIVISTPGRLLEHMTLKNVELANVEFVVLDEADRMLDMGFIADVR 170

Query: 412 LKLTQKATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
             L Q  +A   LL +AT  P    L    L +    + T+  +    ++ V+ P++  D
Sbjct: 171 QMLAQITSAHQTLLFSATISPTVNELAHKLLKNHQEIRATQLNSAADTVQHVMYPVSEED 230

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMS 526
           ++     ++  +      +             S  E+ + L     +S    A+ H   S
Sbjct: 231 KIRLFKTLLAEQNWYQVLVFT-----------STKEQADKLMAALKTSKIDAAVCHADKS 279

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              +   +  FK+   ++LIAT V   G+D+     ++  N  +     +H++ GR GR 
Sbjct: 280 QGARRRAIADFKSAKLQVLIATEVAARGLDIQGLDYVVNYNLPYLPEDYVHRI-GRTGRA 338

Query: 587 EEISSCILLYHPPLSKNSYTRLSVL 611
            +  + I        +       ++
Sbjct: 339 GQQGNAISFVSREEERTVERIERLI 363


>gi|322614908|gb|EFY11833.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619348|gb|EFY16228.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623160|gb|EFY20002.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628449|gb|EFY25237.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634857|gb|EFY31588.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638578|gb|EFY35273.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640887|gb|EFY37535.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645384|gb|EFY41912.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651731|gb|EFY48103.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654369|gb|EFY50691.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661210|gb|EFY57436.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662662|gb|EFY58869.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667727|gb|EFY63887.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671861|gb|EFY67982.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677094|gb|EFY73158.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680244|gb|EFY76283.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685327|gb|EFY81323.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194310|gb|EFZ79506.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199386|gb|EFZ84480.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323205860|gb|EFZ90823.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323217187|gb|EGA01908.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323227265|gb|EGA11435.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323232049|gb|EGA16156.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234576|gb|EGA18663.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238029|gb|EGA22088.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243370|gb|EGA27389.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246177|gb|EGA30162.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253678|gb|EGA37505.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259111|gb|EGA42757.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260421|gb|EGA44034.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266491|gb|EGA49978.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271215|gb|EGA54642.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 457

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 137/358 (38%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVTLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKETVSLDAL-HILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   ++PI+  I  ++ +   IE+     S  +K   +   + + +    
Sbjct: 187 WPDAIAAISGR-VQQQPIRIEIDTVDALP-AIEQQFFETSVHEKISLLQTLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNYELAWDPEVHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQ 361


>gi|293605139|ref|ZP_06687530.1| ATP-independent RNA helicase DbpA [Achromobacter piechaudii ATCC
           43553]
 gi|292816463|gb|EFF75553.1| ATP-independent RNA helicase DbpA [Achromobacter piechaudii ATCC
           43553]
          Length = 462

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 79/461 (17%), Positives = 174/461 (37%), Gaps = 66/461 (14%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L+++ F   T  Q  ++  IL+          I Q   GSGKT    + +   ++     
Sbjct: 19  LQSLGFEQMTPIQAQSLPLILEGRD------IIAQAKTGSGKTAAFGLGVLQKLDPARLA 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +    + +  + G  P   + ++L R     AH+++
Sbjct: 73  PQALLVCPTRELADQVAQELRRLARLIPNVKILTLCGGAPARPQAESLAR----GAHLVV 128

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    QD ++   L        +L   D     G    +                    
Sbjct: 129 GTPGRIQDHLERGSLDLSGLTTLVLDEADRMVDMGFYDDIVAIASHCPAK---------R 179

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++    +I K++ +         V +        IE++   + E  +   +   +
Sbjct: 180 QTLLFSATYPDNIRKLSARFLRNPAE--VKVEAQHDASRIEQIFYEIDEKDRLDAVARLL 237

Query: 493 EEKKESNFRSVVE---RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              +  +  +      R + L E   +   S   ++G +   +++ ++  F N +C +L+
Sbjct: 238 AHFRPVSTLAFCNTKIRSHDLVERLQADGISAQALNGDLEQRERDEILIQFANQSCAVLV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL------ 600
           AT V   G+D+ +   +I  +        +H++ GR GRG++    + L  P        
Sbjct: 298 ATDVAARGLDIQNLGAVINVDVTKDTEVHVHRI-GRSGRGDQKGLALSLCSPDEMRWANL 356

Query: 601 ------SKNSYTRLSVLKNTEDGFLIA-EEDLKQRK-------EGEILG--IKQSGMPKF 644
                 +   +  +  LK   D  L A    L  +         G++LG      G+   
Sbjct: 357 VEQYQGTPLKWGDIKSLKPKADRPLRAPMVTLCIQGGKKDKLRPGDLLGALTGDGGLTFE 416

Query: 645 LIA--QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            +        ++ + + R+ AK   ++  + ++++G+  R+
Sbjct: 417 QVGKINITEFNAYVALDRQIAKQAFSRVSN-SNIKGRRFRM 456


>gi|237730082|ref|ZP_04560563.1| ATP-dependent RNA helicase DeaD [Citrobacter sp. 30_2]
 gi|226908688|gb|EEH94606.1| ATP-dependent RNA helicase DeaD [Citrobacter sp. 30_2]
          Length = 642

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 153/414 (36%), Gaps = 48/414 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     SS A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERSGYSSAAL-NGDMNQSLREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDLK-QRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
                 +K T     +   DL  +R+  +     Q    +   +  + + +LL 
Sbjct: 358 RNIERTMKLTIPEVELPNADLLGKRRLEKFAAKVQ---QQLESSDLDQYRALLA 408


>gi|326538779|gb|ADZ86994.1| DEAD/DEAH box helicase domain protein [Brucella melitensis M5-90]
          Length = 455

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 128/347 (36%), Gaps = 39/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            P   Q  AI   L+          +     GSGKT    + +   +            +
Sbjct: 29  EPKPIQTQAIPSQLEGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTAR 82

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  + I+  +++  I   ++ G + +  + K +         ++I T 
Sbjct: 83  ALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATP 138

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPR 433
               D +        Q   L+L   D     G    +K   KAT       L +AT    
Sbjct: 139 GRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKE 198

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L      D  ++   P G     I  V+ P+   ++      ++     ++  +  +
Sbjct: 199 IASLAERLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTR 258

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +   ++  R          E     +A IHG  S   ++  ++ F++GT ++L+AT + 
Sbjct: 259 TKHGADAVVRH--------LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIA 310

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 311 ARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 356


>gi|289617759|emb|CBI61482.1| unnamed protein product [Sordaria macrospora]
          Length = 648

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 131/374 (35%), Gaps = 45/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA--------------AAV 318
           PT  Q+ +I  +   M  ++ M        GSGKT   L  +               AA 
Sbjct: 242 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQSFHTGPSPIPASAAG 295

Query: 319 EAGGQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
             G Q      ++I+AP   L  Q Y+  +K+   + +   ++ G      + + +ER  
Sbjct: 296 AYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIER-- 353

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMT 427
                +++ T     D I+  ++ L  +     DE  R          Q         M 
Sbjct: 354 --GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEP--QIRRIVEGEDMP 409

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                +TL+ ++    DI  +  +   +  I   +  +    E I +    + +  K   
Sbjct: 410 KVDQRQTLMFSATFPRDIQILA-RDFLKDYIFLSVGRVGSTSENITQKVEYVEDVDKRSV 468

Query: 488 ICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +   +              + + +  +    +       IHG  +  ++E  ++ F+NG 
Sbjct: 469 LLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGR 528

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           C +L+AT V   G+D+ + + +I  +        +H++ GR GR          ++    
Sbjct: 529 CPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGIATAFFNRGNR 587

Query: 602 KNSYTRLSVLKNTE 615
                 L +LK   
Sbjct: 588 GVVRELLELLKEAN 601


>gi|260887674|ref|ZP_05898937.1| ATP-dependent RNA helicase DeaD [Selenomonas sputigena ATCC 35185]
 gi|260862554|gb|EEX77054.1| ATP-dependent RNA helicase DeaD [Selenomonas sputigena ATCC 35185]
          Length = 436

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 120/337 (35%), Gaps = 30/337 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  QE AI  +            I+Q   G+GKTL  L+ +   ++      QA++++P 
Sbjct: 15  TLVQEQAIPAVRSGRD------AIVQAQTGTGKTLAFLLPLLERIKGNARVAQALVVSPT 68

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q     K       I   ++ G      ++  L +    +  +II T     D +
Sbjct: 69  RELAMQTARVAKTLADAVGIRTALVYGGQDIERQKDKLRQ----KPQLIIATPGRLLDHL 124

Query: 391 QYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLTSL 440
           + +        K++L   DE  R G  + +   L   A    ++L +AT   R   LT  
Sbjct: 125 RRHSVELSQVNKIVLDEADELMRLGFVEDVETMLEALAGDHQLMLFSATMPERIRALTRR 184

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF 500
              +  +IT +P          + ++  ++        L    + Y            + 
Sbjct: 185 YMKEPREITVQPECVTLANIEQVIVDTREDTKLDKLCELLNKYQPYLAMVF------CHT 238

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           +  V             +  +HG ++   +  VM  F+    ++L+ T +   G+D+   
Sbjct: 239 KQKVAHVTLELAGRGYLVDELHGDLTQTQRNLVMRRFREAKLQILVVTDIAARGLDIEGV 298

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           + +   +        +H++ GR GR       +   +
Sbjct: 299 THVFNYDLPQDTEWYIHRI-GRTGRAGAKGLAVTFVN 334


>gi|190346939|gb|EDK39127.2| hypothetical protein PGUG_03226 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 676

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 159/420 (37%), Gaps = 41/420 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------EAGGQA 324
            PT  Q  AI               I     GSGKTL  LI MA A+         G + 
Sbjct: 267 EPTAIQCEAIPA------SAEGRDLIACAPTGSGKTLAYLIPMAQALISSPKTKNYGIRG 320

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           V++AP   LA Q Y+ +    + + + V +++    Q   + +   I+  +  ++I T  
Sbjct: 321 VVIAPTNELAIQIYQTLAPMCRGSNLNVTLLS---KQVASKISSSIISANKFDVLICTPL 377

Query: 385 LFQDSIQYYKLILVIVDE----------QHRFGVQQRLKLTQKATAPHVLLMTATPIP-- 432
              D ++  ++ L  V+            H F  Q    L+          M +  IP  
Sbjct: 378 RLIDLVKKEQVDLSKVEHLVIDEADKLFDHGFVEQTDEILSHCTLPTRRTSMFSATIPSG 437

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              +  + + D     +  K      I   ++     +  +  ++ ++ +G+    I   
Sbjct: 438 VEEMANSIMKDQIRIIVGHKEGASTSIDQKLVFTGNEEGKLLAIRQMVQQGEFKPPIIIF 497

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           ++    +        ++ L      ++ +IH   +   +E  +  FKNG   +LI T V+
Sbjct: 498 LQSIPRAKALFHELIYDKL------NVEVIHAERTPKQREEAIRRFKNGDAWVLITTDVL 551

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D    +++I  +      A +H++ GR GRG +    +  +           L+V+
Sbjct: 552 ARGVDFKGVNLVINYDVPQTSQAYVHRI-GRTGRGGKEGKAVTFFTKEDKLAIKPVLNVM 610

Query: 612 KNTE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           K +   +G+    E +++  + E   IKQ  + +  I+       ++   RK  K ++  
Sbjct: 611 KQSGCHEGYSEWMESMEKLTKKEKQQIKQHEIKRKKISTVP---QVVSKKRKQRKEMIEA 667


>gi|156720287|dbj|BAF76796.1| Vasa-related protein [Enchytraeus japonensis]
          Length = 990

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 143/367 (38%), Gaps = 36/367 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA----------AAVEAG 321
            PT  Q+ A+  I+        M+       GSGKT   L+ M             VE G
Sbjct: 539 KPTPIQKWAVPVII----SGRDMMG--CAQTGSGKTASFLLPMLTKMLGTGFEPPCVEDG 592

Query: 322 ---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                 +++AP   L  Q +   +K++ +T +   +  G +  +++ K + +     AHI
Sbjct: 593 CAMPLMLVLAPTRELVLQIFHETRKFSFDTVVRAVVAYGGVSSSYQEKEILK----GAHI 648

Query: 379 IIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           +I T     D      I   KL  +++DE  R              +     M +    +
Sbjct: 649 VIATPGRLIDFFGKKRINLCKLKYLVLDEVDRMLDMGFHTAIASILSQGESGMPSVNNRQ 708

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T+V ++    ++ K+  K      I   +  I   +  IE+  +++ +  K   +   ++
Sbjct: 709 TVVFSATIPEEVQKLAAKLLREDYIFITVGCIGSANLDIEQYVLLMEQENKRDKLLEIVQ 768

Query: 494 EKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           ++ E         + + +  ++     +   A IHG ++  ++E  +  F++G   +L+A
Sbjct: 769 KRGEDKIIVSVEEKRMADFISAFLSQASFPTASIHGNLTQQEREKALRDFRSGVSPILVA 828

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI-SSCILLYHPPLSKNSYT 606
           T V   G+D+ +   +I  +        +H++ GR GR      +         +  + +
Sbjct: 829 TNVAARGLDIPEVKHVINYDMPPHIEEYVHRI-GRPGRCGNTGKATAFFVAEADNHLARS 887

Query: 607 RLSVLKN 613
            + VL +
Sbjct: 888 LVKVLSD 894


>gi|67967591|dbj|BAE00278.1| unnamed protein product [Macaca fascicularis]
          Length = 529

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 126/365 (34%), Gaps = 39/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  A   +LQ +        I     G+GKTL  L+     ++            
Sbjct: 145 KPTPIQSQAWPIVLQGID------LIGVAQTGTGKTLCYLMPGFIHLDLQPTLKGQRNRP 198

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++ P   LA Q      KY+    +    + G   +  + + L +       III T
Sbjct: 199 GMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIEELRK----GVDIIIAT 253

Query: 383 HALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      +    +  +++DE  +           K      +L+   P  +T++ 
Sbjct: 254 PGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMK------ILLDVRPDRQTVMT 307

Query: 438 TSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           ++     + ++ +       I  V    ++ ++ + + I              ++     
Sbjct: 308 SATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMHTFLQNMSS 367

Query: 494 EKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             K   F S     + L         SI  +HG     D+E  +++FK G  ++LIAT +
Sbjct: 368 TDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVRILIATDL 427

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D + +   +        +H++ GR GR       I        + +   +++
Sbjct: 428 ASRGLDVHDVTHVYNFDFPRNIEEYVHRI-GRTGRAGRTGVSITTLTRNDWRVASELINI 486

Query: 611 LKNTE 615
           L+   
Sbjct: 487 LERAN 491


>gi|323977024|gb|EGB72111.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
          Length = 457

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQKIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAITAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|294791601|ref|ZP_06756749.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 6_1_27]
 gi|294456831|gb|EFG25193.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 6_1_27]
          Length = 432

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 128/352 (36%), Gaps = 22/352 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  QE +I  + +          I +   G+GKTL  L+ +   V       Q +I+A
Sbjct: 24  EPTPIQEQSIPVVFKG------NDVIAKAQTGTGKTLAFLLPVLQRVHTDVHQEQVLIIA 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L +Q  +  K+      + +  + G      + + L R    +  +I+GT     D
Sbjct: 78  PTRELIKQISDEAKEIGSILNVDILPLIGGKTIEAQLQQLGR----RPQVILGTPGRLLD 133

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
             +   L L  +         Q L +       +  L+  T   R L+L S    D  + 
Sbjct: 134 HAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIEN--LIGQTDANRQLLLFSATIPDKIRN 191

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---ESNFRSVVE 505
             K    KP+       +   E I++   +++  +K   +   IE+        F +  E
Sbjct: 192 LAKAYMSKPVSVTAEGKHITLESIDQRVYMMNPEEKTQRLIKMIEDDNPFLAIVFCNKRE 251

Query: 506 RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
               L    T+   +IA +HG ++   +  ++  F     ++L+AT +   GID+   + 
Sbjct: 252 GAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITH 311

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +   +        +H++ GR GR       +    P            ++ T
Sbjct: 312 VYNYDVPRDVDYYIHRI-GRTGRAGNSGVAVTFATPQDESWLRRIERAIQAT 362


>gi|265984119|ref|ZP_06096854.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|264662711|gb|EEZ32972.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 462

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 128/347 (36%), Gaps = 39/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            P   Q  AI   L+          +     GSGKT    + +   +            +
Sbjct: 36  EPKPIQTQAIPSQLEGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTAR 89

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  + I+  +++  I   ++ G + +  + K +         ++I T 
Sbjct: 90  ALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATP 145

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPR 433
               D +        Q   L+L   D     G    +K   KAT       L +AT    
Sbjct: 146 GRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKE 205

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L      D  ++   P G     I  V+ P+   ++      ++     ++  +  +
Sbjct: 206 IASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTR 265

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +   ++  R          E     +A IHG  S   ++  ++ F++GT ++L+AT + 
Sbjct: 266 TKHGADAVVRH--------LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIA 317

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 318 ARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 363


>gi|251793160|ref|YP_003007888.1| cold-shock deAd box protein a [Aggregatibacter aphrophilus NJ8700]
 gi|247534555|gb|ACS97801.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Aggregatibacter aphrophilus NJ8700]
          Length = 600

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 153/423 (36%), Gaps = 49/423 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+  I  +L+          +     GSGKT    + + A +   E   
Sbjct: 22  SDLGFETPSPIQQICIPHLLEGRDV------LGMAQTGSGKTAAFSLPILAKIDPAEKHP 75

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  + + +    I V  + G      R     R     A +++G
Sbjct: 76  QLLVMAPTRELAIQVADACEHFVKYAKGINVVTLYGG----QRYDIQLRALKQGAQVVVG 131

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D ++   L        +L   DE  R G    ++        H          +
Sbjct: 132 TPGRILDHLRRGTLSLAELKAIVLDEADEMLRMGFIDDVETVMAELPEH---------HQ 182

Query: 434 TLVLTSLGDIDISKITEKPA-GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           T + ++     I +IT++     + +K      +  D       V       A     ++
Sbjct: 183 TALFSATMPEPIRRITKRFMKDPQEVKIKATQQSAPDIAQSCWYVHGLRKNDALLRFLEV 242

Query: 493 EEKKESNFRSVVER----FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           E+   +   +  +        L E      A ++G M+   +E  +D  ++G+  +++AT
Sbjct: 243 EDFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIVVAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+   S+++  +      + +H++ GR GR       +L   P   +      
Sbjct: 303 DVAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNVE 361

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGI-KQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            ++K   +   +           E+L   ++      +  Q E HD  LE+ R+  + + 
Sbjct: 362 HLIKKNIEEVKLPNH--------EVLQACRRKKFKDKITTQLEHHD--LELYRELLEDMF 411

Query: 668 TQD 670
           T D
Sbjct: 412 TAD 414


>gi|168056517|ref|XP_001780266.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668320|gb|EDQ54930.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 397

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 133/369 (36%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+ A+  I+           I Q   G+GKT +  +A+   ++      QA+I++
Sbjct: 46  KPSAIQQRAVMPIISGRD------AIAQAQSGTGKTSMIALAVCQMIDTATREVQALILS 99

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        +      G        + LE       H++ GT     D
Sbjct: 100 PTRELAAQTEKVILAIGDFMNVQAHACIGGKSIGEDIRKLEY----GVHVVSGTPGRVYD 155

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        IL   DE    G + ++            V+L++AT     L +T
Sbjct: 156 MIKRRTLRTRSIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLVSATLPHEILEMT 215

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 216 NKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 268

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   +++++M  F++GT ++LI T V   G+D
Sbjct: 269 FCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQKERDAIMAEFRSGTTRVLITTDVWARGLD 328

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S++I  +  +     +H++ GR GR       I        +             D
Sbjct: 329 VQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVRSDDIRILRDIEQYYSTQID 387

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 388 EMPMNVADL 396


>gi|156848475|ref|XP_001647119.1| hypothetical protein Kpol_1036p3 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160385736|sp|A7TEF4|FAL1_VANPO RecName: Full=ATP-dependent RNA helicase FAL1
 gi|156117803|gb|EDO19261.1| hypothetical protein Kpol_1036p3 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 399

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 76/350 (21%), Positives = 133/350 (38%), Gaps = 35/350 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P+  Q  AI  I+           I Q   G+GKT    I M  A++      QA++++
Sbjct: 45  APSAIQSRAITQIISG------TDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLS 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +        +    +TG          L R+      ++ GT     D
Sbjct: 99  PTRELASQINQVVSNLGDYMNVQSYAMTGGKTMKD---DLNRMQKNGCQVVSGTPGRVLD 155

Query: 389 SIQYY-----KLILVIVDEQHRF-----GVQQRLKLTQK--ATAPHVLLMTATPIPRTLV 436
             + +      + ++I+DE         G +Q++         A  V++++AT     L 
Sbjct: 156 MFKRHLLNTRNVQMLILDEADELLGESLGFKQQIYDIFTKLPAACQVVVVSATMSKDILE 215

Query: 437 LTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +T     D  KI  K      + IK   + + + D   + L          Y      + 
Sbjct: 216 VTKKFMSDPVKILVKRDEISLEGIKQYYVNVEKEDWKFDTL-------CDLYDSLTITQC 268

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +  V+  ++       ++  +HG M   D+  VM  F++G  ++LI+T V   G
Sbjct: 269 VIFCNTKKKVDWLSAKLTQSNFAVVSMHGDMKQEDRNKVMSDFRSGHSRVLISTDVWARG 328

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI-LLYHPPLSKN 603
           IDV   S++I  +        +H++ GR GR       I  +    LSK 
Sbjct: 329 IDVQQVSLVINYDIPEIMENYIHRI-GRSGRFGRKGVAINFITSSDLSKM 377


>gi|326523907|dbj|BAJ96964.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 130/348 (37%), Gaps = 43/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+I+A
Sbjct: 63  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVECQALILA 116

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 117 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS----GVHVVVGTPGRVFD 172

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L   
Sbjct: 173 MLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEAL--- 229

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKKE 497
                   +IT K    KP++ ++       E I++  V +  E  K   +C   E    
Sbjct: 230 --------EITRKFMN-KPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAI 280

Query: 498 S------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +      N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++
Sbjct: 281 TQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 340

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             GIDV   S++I  +        LH++ GR GR       I      
Sbjct: 341 ARGIDVQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRE 387


>gi|320037809|gb|EFW19746.1| ATP-dependent RNA helicase DED1 [Coccidioides posadasii str.
           Silveira]
          Length = 666

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/380 (16%), Positives = 134/380 (35%), Gaps = 57/380 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGGQA------ 324
           +PT  Q+ +I  +   M  ++ M        GSGKT   L  +   A + G  A      
Sbjct: 204 TPTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQAFKNGPSAVPTQNA 257

Query: 325 ---------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                          +I+AP   L  Q Y+  +K+   + +   ++ G      + + +E
Sbjct: 258 NQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIE 317

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP 421
           R       +++ T     D I+  +        L+L   D     G + +++   +    
Sbjct: 318 R----GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDM 373

Query: 422 ------HVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                   L+ +AT     + L    L D     +    +  + I   +  +   D+   
Sbjct: 374 PPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDADKRSV 433

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L ++ + G     I            + + +  +    +       IHG  +  ++E  
Sbjct: 434 LLDILHTHGTGLTLIFV--------ETKRMADSLSEFLINQNFPATAIHGDRTQRERERA 485

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           ++ F+NG C +L+AT V   G+D+ + + ++  +        +H++ GR GR        
Sbjct: 486 LEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI-GRTGRAGNTGLST 544

Query: 594 LLYHPPLSKNSYTRLSVLKN 613
             ++          + +LK 
Sbjct: 545 AFFNRGNRGVVRDLIELLKE 564


>gi|319902155|ref|YP_004161883.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417186|gb|ADV44297.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 415

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 125/357 (35%), Gaps = 33/357 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE +I  IL+          I     G+GKT   L+ +   +  G         +IM
Sbjct: 25  TPIQEKSIPVILEGRD------LIAVAQTGTGKTAAYLLPVLNNLSEGKHPEDSINCIIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ ++    +    + G        +  + +  G A ++I T     
Sbjct: 79  SPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLTLG-ADVVIATPGRLI 137

Query: 388 DS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                  +   ++   I+DE  R      L +        ++        +T++ ++   
Sbjct: 138 AHLSLGYVDLSRVTYFILDEADRM-----LDMGFYDDIMQIVKFL-PKERQTIMFSATMP 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
             I ++            V + +++  + I +   V  E +K   I     E+       
Sbjct: 192 TKIQQLANNILNNPAE--VKLAVSKPADKIVQAAYVCYENQKLGIIRNLFAEQTPERVII 249

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +    ++  +H  +    +E VM  FK G   +L+AT ++  GID
Sbjct: 250 FASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREDVMYEFKAGRINILVATDIVARGID 309

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + D  ++I  +  H     +H++ GR  R       +         N       L+ 
Sbjct: 310 IDDIRLVINYDVPHDSEDYVHRI-GRTARANNDGVALTFISEKEQTNFKNIEKFLEK 365


>gi|260773326|ref|ZP_05882242.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260612465|gb|EEX37668.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 428

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/362 (16%), Positives = 129/362 (35%), Gaps = 39/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
             T  Q+ AI +  +                G+GKT    + +   +   G        +
Sbjct: 23  KLTPIQQQAIPEARKGHD------IFATAQTGTGKTAAFSLPVIQRLLDSGKKPSPHTAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  + IK Y + T + V  + G    + + + LE        I++ T 
Sbjct: 77  ALILAPTRELAAQIAQNIKDYVKYTSLSVTAVYGGNKMSSQVRQLES----GVDILVATP 132

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQ-----RLKLTQKATAPHVLLMTATPIPR 433
              ++      +    L  ++ DE  R          R  + +  T+P +++ +AT   +
Sbjct: 133 GRLEEHLSEGNVSLANLEFLVFDEADRILDMGFINPVRKIMLEVETSPQIMMFSATTSAQ 192

Query: 434 --TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L    L                 +  V+ P+++  +     +++  +  +   +   
Sbjct: 193 LNQLAGDILRKPKRINADRVNTTASTVAHVVYPVDQERKTELLSELIGRKNWQQVLVFVN 252

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +E       +  +    L      ++ I HG      +   +D FK G  ++++AT V 
Sbjct: 253 YKE-------TANQVVKELKLDGIKAV-ICHGDKGQSARRRALDEFKEGKARVMVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+VD   +I  +        +H++ GR GR  +    +               +++
Sbjct: 305 ARGLDIVDLPHVINYDMPFLAEDYVHRI-GRTGRAGKQGHAVSFVSREEELTLIQVENLI 363

Query: 612 KN 613
           + 
Sbjct: 364 QQ 365


>gi|70733086|ref|YP_262859.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5]
 gi|68347385|gb|AAY94991.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           fluorescens Pf-5]
          Length = 622

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/378 (18%), Positives = 132/378 (34%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGHPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q ++  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQVQAMAR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L    K   +   I 
Sbjct: 187 NLLFSATFSKDITDLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    S   IHG  S   +   +  FK G  ++L+A
Sbjct: 246 AGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEVRILVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|17987217|ref|NP_539851.1| ATP-dependent RNA helicase RHLE [Brucella melitensis bv. 1 str.
           16M]
 gi|225852555|ref|YP_002732788.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis ATCC 23457]
 gi|256044711|ref|ZP_05447615.1| DEAD/DEAH box helicase domain protein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|17982889|gb|AAL52115.1| ATP-dependent RNA helicase rhle [Brucella melitensis bv. 1 str.
           16M]
 gi|225640920|gb|ACO00834.1| DEAD/DEAH box helicase domain protein [Brucella melitensis ATCC
           23457]
          Length = 535

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 142/393 (36%), Gaps = 40/393 (10%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R   D   A  +  + + K+        + + G + + +       P   Q  AI   L
Sbjct: 64  RRFKADRECAVPLKEIELTKENTGG-FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQL 122

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
           +          +     GSGKT    + +   +            +A+I+AP   LA Q 
Sbjct: 123 EGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQI 176

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+  +++  I   ++ G + +  + K +         ++I T     D +       
Sbjct: 177 EQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATPGRLTDLMRDGLVDL 232

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISK 447
            Q   L+L   D     G    +K   KAT       L +AT       L      D  +
Sbjct: 233 SQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVR 292

Query: 448 ITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P G     I  V+ P+   ++      ++     ++  +  + +   ++  R    
Sbjct: 293 VEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGADAVVRH--- 349

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 E     +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV   S ++ 
Sbjct: 350 -----LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +        +H++ GR GR     + I LY P
Sbjct: 405 YDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|225028959|ref|ZP_03718151.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
 gi|224953734|gb|EEG34943.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
          Length = 529

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 120/342 (35%), Gaps = 41/342 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           +  Q  AI   L           I Q   G+GKT    I +   V+      QA+++ P 
Sbjct: 28  SPIQAKAIPVELSGKDV------IGQAQTGTGKTAAFGIPILQKVDPKLKKPQAIVLCPT 81

Query: 331 GILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + I+K  +    + +  I G    + + ++L+        IIIGT     D 
Sbjct: 82  RELAIQVADEIRKLAKYMSSVKILPIYGGQEISKQIRSLKA----GVQIIIGTPGRMMDH 137

Query: 390 IQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           ++         + ++L   DE    G ++ ++                   +T++ ++  
Sbjct: 138 MRRKTVKFDNIHTVVLDEADEMLDMGFREDIETILNGVPEE---------RQTMLFSATM 188

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
              I ++  +   + P    +I        I +    +    K+  +   ++        
Sbjct: 189 PKPIMELA-RAYQQNPEIIKVIRKELTVPNITQYYYEVRPKNKSEVLSRLLDIYDPKLSV 247

Query: 497 --ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
              +  + V E    L      +  + HG M    ++ VM  F++G   +L+AT V   G
Sbjct: 248 VFCNTKKGVDELVADLKGRGYFAEGL-HGDMKQTMRDRVMHRFRSGKTDILVATDVAARG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           IDV D   +   +        +H++ GR GR           
Sbjct: 307 IDVDDVDAVFNYDLPQDEEYYVHRI-GRTGRAGRTGMAFSFV 347


>gi|254513899|ref|ZP_05125960.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium
           NOR5-3]
 gi|219676142|gb|EED32507.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium
           NOR5-3]
          Length = 435

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/353 (17%), Positives = 123/353 (34%), Gaps = 47/353 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----AGGQA-- 324
            PT  Q  +I  +L           +     G+GKT   ++ +   +        GQ   
Sbjct: 23  EPTPIQIKSIPLVLDGQDV------LAAAQTGTGKTAAFVLPILQRLAFVGLAKAGQVRT 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q +  ++ Y Q   +   ++ G +    +  AL R        ++ T  
Sbjct: 77  LVLTPTRELAAQVHASVEAYGQYLDLRSAVVFGGVKAEPQIAALAR----GVDTLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLT-----QKATAPHVLLMTATPIPRT 434
              D     ++ +  L ++++DE  R      +        Q       L+ +AT     
Sbjct: 133 RLLDLAQQGAVDFSALEVLVLDEADRMLDMGFIHDIRRIVDQLPENRQTLMFSATFSNEI 192

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
             L +   ID            P+   +   N   E+++++   +   +K   +   ++ 
Sbjct: 193 RALAAQYLID------------PVSVEVAAANSTTELVQQMAYPVDRDRKTDLLIHLLKY 240

Query: 495 KKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +          +    R            A IHG  S   ++  +D FK G  +LL+AT
Sbjct: 241 HQWSQVLIFCRTKHGANRLTKKLLAAGFKAAPIHGNKSQNARQRALDEFKTGKLQLLVAT 300

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI-SSCILLYHPPL 600
            +   G+D+     ++  +        +H++ GR GR      S  LL    L
Sbjct: 301 DIAARGLDINQLPEVVNFDLPCVPQDYVHRI-GRTGRAGATGRSHSLLASEDL 352


>gi|254457480|ref|ZP_05070908.1| cold-shock deAd box protein a [Campylobacterales bacterium GD 1]
 gi|207086272|gb|EDZ63556.1| cold-shock deAd box protein a [Campylobacterales bacterium GD 1]
          Length = 531

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 137/343 (39%), Gaps = 37/343 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAP 329
           +P+  Q +AI  ILQ          + Q   G+GKT    +     ++   G + +++ P
Sbjct: 40  TPSPIQAAAIPLILQGRD------IVGQAHTGTGKTAAFGLPALNNIDVRNGVEILVITP 93

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + + KY +N       + G      +   ++R     A +++ T     D 
Sbjct: 94  TRELATQVSDELFKYGRNINAKTVTVYGGSSYNRQIDLIDR----GASVVVATPGRLLDI 149

Query: 390 IQYY--------KLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVL 437
           ++           ++L   DE    G         +   T    LL +AT P P + L  
Sbjct: 150 LKKGLVKNFTPSIVVLDEADEMLDMGFLDDINEIFSYLPTKRQTLLFSATMPKPIKLLAE 209

Query: 438 TSLGDIDISKITEKPAGRKPIKT--VIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             L + +   IT+       I+    +I  +  D+ I  ++++ SE  K   +  +    
Sbjct: 210 RILDNPEFISITKGETTNSDIEQLYYVIEESERDDAI--IRLMDSEDTKKSVVFCRT--- 264

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +S V+R +++  +       +HG M    +E+V+  FK+ + K+L+AT V   GI
Sbjct: 265 -----KSEVDRLSNVLSNAGYLANGLHGDMEQRQRETVIKGFKSNSVKVLVATDVAARGI 319

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V + S +   +      + +H++ GR GR       I L  P
Sbjct: 320 HVDNISHVFNYHIPFDPESYVHRI-GRTGRAGTKGKAITLLTP 361


>gi|25809054|gb|AAN74635.1| DEAD box RNA helicase [Pisum sativum]
 gi|40950574|gb|AAR97917.1| DEAD box RNA helicase [Pisum sativum]
          Length = 413

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 128/348 (36%), Gaps = 43/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYSVTECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----SSGVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L   
Sbjct: 172 MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEAL--- 228

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
                   +IT K    KP++ ++      ++ + +    V  E  K   +C   E    
Sbjct: 229 --------EITRKFMN-KPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAI 279

Query: 497 -----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             GIDV   S++I  +        LH++ GR GR       I      
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTKD 386


>gi|212537643|ref|XP_002148977.1| ATP dependent RNA helicase (Dbp1), putative [Penicillium marneffei
           ATCC 18224]
 gi|210068719|gb|EEA22810.1| ATP dependent RNA helicase (Dbp1), putative [Penicillium marneffei
           ATCC 18224]
          Length = 692

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/381 (15%), Positives = 134/381 (35%), Gaps = 54/381 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
           +PT  Q+ +I  +   M+ ++ M        GSGKT   L  + +               
Sbjct: 218 TPTPVQKYSIPIV---MNGRDLM---ACAQTGSGKTGGFLFPILSQAFQTGPSAAPAPAA 271

Query: 319 ---------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                    +A   ++I+AP   L  Q Y+  +K+   + +   ++ G      + + +E
Sbjct: 272 GGNFYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIE 331

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP 421
           R       +++ T     D I+  +        L+L   D     G + +++   +    
Sbjct: 332 R----GCDLLVATPGRLVDLIERGRISLTNIKYLVLDEADRMLDMGFEPQIRRIVEGED- 386

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
               M      +TL+ ++    DI  +  +   +  +   +  +    E I +    + +
Sbjct: 387 ----MPQVNDRQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQRIEYVED 441

Query: 482 GKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             K   +   +     +         + + +       +       IHG  +  ++E  +
Sbjct: 442 HDKRSVLLDILHTHGSTGLTLIFVETKRMADSLCDFLINQNFPATAIHGDRTQRERERAL 501

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F+N  C +L+AT V   G+D+ + + ++  +        +H++ GR GR         
Sbjct: 502 EMFRNARCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI-GRTGRAGNTGIATA 560

Query: 595 LYHPPLSKNSYTRLSVLKNTE 615
            ++          + +LK   
Sbjct: 561 FFNRGNRGVVRDLIDLLKEAN 581


>gi|168463497|ref|ZP_02697414.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195633290|gb|EDX51704.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 629

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 164/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LTDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 SAE---DEELDLETLAAALLKMA 432


>gi|134292532|ref|YP_001116268.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134135689|gb|ABO56803.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 483

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 135/376 (35%), Gaps = 43/376 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q +AI  +L           +     G+GKT    + +   +   G        +
Sbjct: 23  TPTPVQANAIPAVLGGKDV------MAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +   +Y +   +      G +    +   L +       +++ T 
Sbjct: 77  VLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMKLRK----GVDVLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++Q+ ++  +++DE  R        L          +  A P  R  +L 
Sbjct: 133 GRLLDLNRQNAVQFDQVETLVLDEADRM-------LDLGFARELNAVFAALPARRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +       R P+   + P N     I++  V + +  K       + E K  
Sbjct: 186 SATFTDDIRAMAATILRNPVNISVSPPNTTASRIKQWVVPVDKRNKPELFMHLVAENKWE 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +       R+ V+   ++ +    ++  IHG      +   ++ FK    ++L+AT V  
Sbjct: 246 HALVFVKTRAGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKARDVQMLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ D  ++I  +        +H++ GR GR       + L     +       +++ 
Sbjct: 306 RGLDIDDLPMVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALIG 364

Query: 613 NT-----EDGFLIAEE 623
            T     E GF  AE 
Sbjct: 365 KTLRREEEPGFE-AEH 379


>gi|301159830|emb|CBW19349.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|323131640|gb|ADX19070.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 629

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LTDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R+      I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRVLRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 SAE---GEELDLETLAAALLKMA 432


>gi|62289973|ref|YP_221766.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699901|ref|YP_414475.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189024215|ref|YP_001934983.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|254689280|ref|ZP_05152534.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 6 str. 870]
 gi|254693764|ref|ZP_05155592.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 3 str. Tulya]
 gi|254697417|ref|ZP_05159245.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730315|ref|ZP_05188893.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|256257530|ref|ZP_05463066.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 9 str. C68]
 gi|297248372|ref|ZP_06932090.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196]
 gi|62196105|gb|AAX74405.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616002|emb|CAJ11028.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Brucella melitensis biovar Abortus 2308]
 gi|189019787|gb|ACD72509.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|297175541|gb|EFH34888.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196]
          Length = 531

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 142/393 (36%), Gaps = 40/393 (10%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R   D   A  +  + + K+        + + G + + +       P   Q  AI   L
Sbjct: 64  RRFKADRECAVPLKEIELTKENTGG-FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQL 122

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
           +          +     GSGKT    + +   +            +A+I+AP   LA Q 
Sbjct: 123 EGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQI 176

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+  +++  I   ++ G + +  + K +         ++I T     D +       
Sbjct: 177 EQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATPGRLTDLMRDGLVDL 232

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISK 447
            Q   L+L   D     G    +K   KAT       L +AT       L      D  +
Sbjct: 233 SQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVR 292

Query: 448 ITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P G     I  V+ P+   ++      ++     ++  +  + +   ++  R    
Sbjct: 293 VEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGADAVVRH--- 349

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 E     +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV   S ++ 
Sbjct: 350 -----LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +        +H++ GR GR     + I LY P
Sbjct: 405 YDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|226325568|ref|ZP_03801086.1| hypothetical protein COPCOM_03373 [Coprococcus comes ATCC 27758]
 gi|225206051|gb|EEG88405.1| hypothetical protein COPCOM_03373 [Coprococcus comes ATCC 27758]
          Length = 531

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 131/373 (35%), Gaps = 40/373 (10%)

Query: 259 GKIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  QK +R + F   +  Q  AI  ++  +        I Q   G+GKT    I +   
Sbjct: 12  SEEIQKAVRYMGFEEASPIQAKAIPAMISGID------LIGQAQTGTGKTAAFGIPLLEK 65

Query: 318 VE---AGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAH 373
           V+      QA+++ P   LA Q  + I+  ++    I V  I G      + ++L+    
Sbjct: 66  VDPKLKKLQAIVLCPTRELAIQVADEIRNLSRYMHGIKVLPIYGGQDIVKQIRSLKS--- 122

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLL 425
               I+IGT     D ++   + L  V        DE    G ++ ++            
Sbjct: 123 -GTQIVIGTPGRVMDHMRRKTMKLDFVHTVVLDEADEMLNMGFREDIEFVLSGVPEE--- 178

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK- 484
                  +T++ ++     I +IT+K      +  V      +  + +    V  + K+ 
Sbjct: 179 ------RQTVLFSATMPKPIMEITKKFQNNAKVIKVTKKELTVPNIEQYYYDVKPKKKEE 232

Query: 485 -----AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
                     P++     +  + V    N+L      +  + HG M    ++ VM  F+ 
Sbjct: 233 VLSRLLDIYSPRLSVVFCNTKKQVDLLVNALLGRGYFAAGL-HGDMKQEQRDRVMQGFRT 291

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  ++L+AT V   GIDV +   +   +        +H++ GR GR              
Sbjct: 292 GKTEILVATDVAARGIDVDEVEAVFNYDLPQDDEYYVHRI-GRTGRAGREGRAFSFVSGK 350

Query: 600 LSKNSYTRLSVLK 612
                       K
Sbjct: 351 EVYKLKEIQRYCK 363


>gi|224825987|ref|ZP_03699090.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224601624|gb|EEG07804.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 562

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 133/374 (35%), Gaps = 38/374 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------EAGGQA 324
           +PT  Q  AI  +++          +     G+GKT    + +   +       +   +A
Sbjct: 26  TPTPIQAQAIPQVIKG------GDLLAAAQTGTGKTAGFTLPLLHRLGPAPTHLKGRPRA 79

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y +       ++ G +    +  AL +       I++ T  
Sbjct: 80  LVLTPTRELAAQVEESVRTYGKYLPHKSMVMFGGVGINPQIAALRKP----LDILVATPG 135

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      +    + ++++DE  R      +   +K      +L       + L+ ++
Sbjct: 136 RLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIHDIKK------VLALLPAKRQNLLFSA 189

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I  + ++     P    +   N  +E++E+   ++   KK   +   I +     
Sbjct: 190 TFSDEIKVLADRLLN-NPQLVEVARRNTANELVEQKVHLVDRDKKTELLTHLISQGDWHQ 248

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R     +    + A IHG  S   +   +  FK  T ++L+AT +   
Sbjct: 249 VLVFTRTKHGANRLAEKLDKSGITAAAIHGNKSQNARTKALADFKANTLQVLVATDIAAR 308

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++     +     +H++ GR GR       + L      K       ++K 
Sbjct: 309 GLDIDQLPHVVNFELPNVPEDYVHRI-GRTGRAGNEGEAVSLVCVDEFKFLKDIEKLIKK 367

Query: 614 TEDGFLIA--EEDL 625
               F +   E DL
Sbjct: 368 DIPQFTVPGYEADL 381


>gi|118404346|ref|NP_001072473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Xenopus (Silurana)
           tropicalis]
 gi|112419339|gb|AAI21889.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Xenopus (Silurana)
           tropicalis]
          Length = 666

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 91/460 (19%), Positives = 155/460 (33%), Gaps = 55/460 (11%)

Query: 201 SIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAG-----QIALLLMRKQFKKEIGIPI 255
           S  EA      P  AK F   SP    ++ DE+         I    ++++ +       
Sbjct: 200 SKYEAMKWADMPPIAKAFYKESPEVASMSRDEVEKWRKENNNIICDDLKEEKRSIPNPVP 259

Query: 256 NVEG-----KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
             E            L    F  PT  Q  A   ILQ +        I     G+GKTL 
Sbjct: 260 RFEDAFHPFPEVMSALEKSGFERPTPIQSQAWPVILQGID------LIGIAQTGTGKTLA 313

Query: 310 ALIAMAAAVE---------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
            L+     ++          G   +++AP   LA Q      KY       + I  G   
Sbjct: 314 YLLPGFIHLDLQPIPREQQDGPGMLVLAPTRELALQVKAECSKYKYKGFESICIYGGG-- 371

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYK---LILVIVDEQHRFGVQQRL 412
              R   + ++  G   I+I T     D      +       L+L   D     G + ++
Sbjct: 372 --DRNNQINKVTKG-VDIVIATPGRLNDLQMNNFVNLKSITYLVLDEADRMLDMGFEPQI 428

Query: 413 K--LTQKATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
              L       H ++ +AT     R L  + L D  +  +           T  + +   
Sbjct: 429 MKILIDIRPDRHTIMTSATWPDGVRRLAKSYLKDPMMVYVGTLDLAAVNTVTQHVLVIPE 488

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
           +E    +   +   K    +   + +K  ++  S       +       +  +HG     
Sbjct: 489 EEKRAFVLHFIDSLKPQDKVIVFVGKKLVADDLSSDFSLQGI------PVQSLHGNREQC 542

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D+E  +D FK G  ++L+AT +   G+DV D + ++  +        +H++ GR GR   
Sbjct: 543 DREQALDDFKKGKVRILVATDLASRGLDVHDVTHVLNFDFPRNIEEYVHRV-GRTGRAGR 601

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTE-----DGFLIAEE 623
               I L      K +   +S+L+        D F +AE 
Sbjct: 602 TGESITLVTRKDWKVAGELISILERANQEVPGDLFDMAER 641


>gi|119175420|ref|XP_001239942.1| hypothetical protein CIMG_09563 [Coccidioides immitis RS]
 gi|118582048|sp|Q1DJF0|DED1_COCIM RecName: Full=ATP-dependent RNA helicase DED1
          Length = 659

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/380 (16%), Positives = 134/380 (35%), Gaps = 57/380 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGGQA------ 324
           +PT  Q+ +I  +   M  ++ M        GSGKT   L  +   A + G  A      
Sbjct: 197 TPTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQAFKNGPSAVPTQNA 250

Query: 325 ---------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                          +I+AP   L  Q Y+  +K+   + +   ++ G      + + +E
Sbjct: 251 NQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIE 310

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP 421
           R       +++ T     D I+  +        L+L   D     G + +++   +    
Sbjct: 311 R----GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDM 366

Query: 422 ------HVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                   L+ +AT     + L    L D     +    +  + I   +  +   D+   
Sbjct: 367 PPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDADKRSV 426

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L ++ + G     I            + + +  +    +       IHG  +  ++E  
Sbjct: 427 LLDILHTHGTGLTLIFV--------ETKRMADSLSEFLINQNFPATAIHGDRTQRERERA 478

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           ++ F+NG C +L+AT V   G+D+ + + ++  +        +H++ GR GR        
Sbjct: 479 LEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI-GRTGRAGNTGLST 537

Query: 594 LLYHPPLSKNSYTRLSVLKN 613
             ++          + +LK 
Sbjct: 538 AFFNRGNRGVVRDLIELLKE 557


>gi|320330891|gb|EFW86865.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 625

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLASK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|288803318|ref|ZP_06408751.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
 gi|288334138|gb|EFC72580.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
          Length = 553

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 127/363 (34%), Gaps = 44/363 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL+          +     G+GKT   L+ + + +  GG        VIM
Sbjct: 7   TPVQEKCIPEILKGHDV------LGVAQTGTGKTAAYLLPVLSKLADGGYPESAINCVIM 60

Query: 328 APIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +P   LAQQ  + ++ +      +    + G        + L+ +A G A ++I T   F
Sbjct: 61  SPTRELAQQIDQGMQGFAYYLNGVSCVAVYGGNDGNRYDQELKSLALG-ADVVIATPGRF 119

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLV 436
              I    +        IL   D     G    +    K        ++ +AT   +   
Sbjct: 120 ISHISLGNVDLSKVSFFILDEADRMLDMGFSDDIMTIAKKLPATCQTIMFSATMPAKIEE 179

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           L      +  +I              + +++  E I++   V  E +K   I    +   
Sbjct: 180 LAKTLLKNPVEIK-------------LAVSKPAEKIQQTAYVCYETQKMGIIKDIFKAGD 226

Query: 497 ESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +  V++          +   +H  +    +  VM  FK+G   +L+AT +
Sbjct: 227 LKRVIIFSGSKQKVKQIAGSLNRMHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDI 286

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +  GID+ D +++I  +  H     +H++ GR  R +     I   +           S 
Sbjct: 287 VSRGIDIDDIAMVINYDVPHDAEDYVHRI-GRTARADRDGKAITFVNEDDIYFFQQIESF 345

Query: 611 LKN 613
           L+ 
Sbjct: 346 LEK 348


>gi|16421839|gb|AAL22152.1| cysteine sulfinate desulfinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|261248446|emb|CBG26283.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|332990138|gb|AEF09121.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 646

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 164/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 38  LTDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 91

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 92  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 147

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 263

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 264 AAIIFVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 315

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 316 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 374

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 375 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQP 429

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 430 SAE---GEELDLETLAAALLKMA 449


>gi|62129424|gb|AAX67127.1| cysteine sulfinate desulfinase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
          Length = 651

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 164/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 43  LTDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 96

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 97  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 152

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 153 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 212

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 213 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 268

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 269 AAIIFVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 320

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 321 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 379

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 380 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQP 434

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 435 SAE---GEELDLETLAAALLKMA 454


>gi|99080768|ref|YP_612922.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
 gi|99037048|gb|ABF63660.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
          Length = 445

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 125/369 (33%), Gaps = 26/369 (7%)

Query: 260 KIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM-AAA 317
           K     +  + F +PT  Q  AI   L           +     G+GKT    + + A  
Sbjct: 11  KHLHTRMEAMGFNTPTPIQARAIPHALNGQDV------LGLAQTGTGKTAAFGVPLVAQM 64

Query: 318 VEAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           +E G        + +I+AP   LA Q  E ++  T+ + +   ++ G +    +   L +
Sbjct: 65  LEYGRKPAAGTVRGLILAPTRELANQIAETLRGLTEGSPLKTGLVVGGVSINPQIHRLSK 124

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
                  I++ T     D +    L L   D        Q L L        +       
Sbjct: 125 ----GTDILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKI-AALLPE 179

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +T++ ++     +++I            V  P     +V + +  +    K +     
Sbjct: 180 ERQTMLFSATMPKQMNEIANAYLKSPVRIEVTPPGKPAAKVTQSVHFIAKAEKLSLLKEL 239

Query: 491 QIEEKKESN-----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
                 E        +  +E+   + +      A IHG  S   +E  + +FK+G   +L
Sbjct: 240 LSAHDGERTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEITVL 299

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+D+ D   +      +   A +H++ GR  R  +    +    P    +  
Sbjct: 300 VATDVAARGLDIPDVKYVYNYELPNVPDAYVHRI-GRTARAGKDGQAVAFCAPDEIGDLK 358

Query: 606 TRLSVLKNT 614
                +  T
Sbjct: 359 AIQKTMGIT 367


>gi|159125027|gb|EDP50144.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus fumigatus
           A1163]
          Length = 674

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/379 (15%), Positives = 135/379 (35%), Gaps = 54/379 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGG-------- 322
           +PT  Q+ +I  +   M+ ++ M        GSGKT   L  +   A + G         
Sbjct: 210 TPTPVQKYSIPIV---MNGRDLM---ACAQTGSGKTGGFLFPILSQAFQTGPSPVPAQAS 263

Query: 323 -------------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                         ++I+AP   L  Q ++  +K+   + +   ++ G      + + +E
Sbjct: 264 GQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIE 323

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP 421
           R       +++ T     D I+  +        L+L   D     G + +++   +    
Sbjct: 324 R----GCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGED- 378

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
               M      +TL+ ++    DI  +  +   +  +   +  +    E I +    + +
Sbjct: 379 ----MPNVNERQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEYVED 433

Query: 482 GKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             K   +   +               + + +  +    +       IHG  +  ++E  +
Sbjct: 434 HDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERAL 493

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F++G C +L+AT V   G+D+ + + +I  +        +H++ GR GR         
Sbjct: 494 EMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGIATA 552

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++          + +LK 
Sbjct: 553 FFNRGNRGVVRELIDLLKE 571


>gi|194446047|ref|YP_002042538.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194404710|gb|ACF64932.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 629

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 164/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LTDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 SAE---GEELDLETLAAALLKMA 432


>gi|39546364|ref|NP_462193.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56415212|ref|YP_152287.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161616286|ref|YP_001590251.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|162139541|ref|YP_218208.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167552072|ref|ZP_02345825.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167990155|ref|ZP_02571255.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231889|ref|ZP_02656947.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168237981|ref|ZP_02663039.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168243114|ref|ZP_02668046.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262709|ref|ZP_02684682.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168819651|ref|ZP_02831651.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194447369|ref|YP_002047310.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470855|ref|ZP_03076839.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194736232|ref|YP_002116230.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249912|ref|YP_002148207.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197265213|ref|ZP_03165287.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197364142|ref|YP_002143779.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|204928320|ref|ZP_03219520.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|238910075|ref|ZP_04653912.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|56129469|gb|AAV78975.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161365650|gb|ABX69418.1| hypothetical protein SPAB_04091 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405673|gb|ACF65892.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194457219|gb|EDX46058.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194711734|gb|ACF90955.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197095619|emb|CAR61187.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213615|gb|ACH51012.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197243468|gb|EDY26088.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197289140|gb|EDY28509.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204322642|gb|EDZ07839.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205323189|gb|EDZ11028.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205331110|gb|EDZ17874.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333912|gb|EDZ20676.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205337772|gb|EDZ24536.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205343559|gb|EDZ30323.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205348425|gb|EDZ35056.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|267995476|gb|ACY90361.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312914306|dbj|BAJ38280.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087727|emb|CBY97491.1| Cold-shock DEAD box protein A homolog; ATP-dependent RNA helicase
           deaD homolog [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225964|gb|EFX51018.1| Cold-shock DEAD-box protein A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615285|gb|EFY12206.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618356|gb|EFY15247.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622839|gb|EFY19683.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626839|gb|EFY23636.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631408|gb|EFY28168.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635325|gb|EFY32039.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322643460|gb|EFY40023.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647104|gb|EFY43605.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648907|gb|EFY45352.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655099|gb|EFY51410.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657702|gb|EFY53970.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664198|gb|EFY60396.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667481|gb|EFY63643.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674729|gb|EFY70821.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675638|gb|EFY71711.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682274|gb|EFY78297.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684877|gb|EFY80875.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716278|gb|EFZ07849.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323191728|gb|EFZ76980.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199035|gb|EFZ84132.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204265|gb|EFZ89274.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207612|gb|EFZ92559.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211335|gb|EFZ96179.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214723|gb|EFZ99472.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323224056|gb|EGA08349.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230295|gb|EGA14414.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233271|gb|EGA17365.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239308|gb|EGA23358.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242441|gb|EGA26467.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246951|gb|EGA30917.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254116|gb|EGA37936.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255233|gb|EGA39010.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262696|gb|EGA46252.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264006|gb|EGA47514.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269392|gb|EGA52847.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 629

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 164/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LTDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 SAE---GEELDLETLAAALLKMA 432


>gi|283832995|ref|ZP_06352736.1| ATP-independent RNA helicase DbpA [Citrobacter youngae ATCC 29220]
 gi|291071607|gb|EFE09716.1| ATP-independent RNA helicase DbpA [Citrobacter youngae ATCC 29220]
          Length = 457

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 135/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLEMTPVQAAALPAILAGRDVR------VQAKTGSGKTAAFGLGLLQHIDAALFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  MQSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   + P+   I  ++ +   IE+     S   K   +   + + +    
Sbjct: 187 WPEAIAAISGR-VQQDPLTIEIDTVDALP-AIEQQFFETSSHGKIPLLQKLLSQYQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHIHRI-GRTARAGNSGLAISFCAPEEAQRANILSEMLQ 361


>gi|261314221|ref|ZP_05953418.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261303247|gb|EEY06744.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
          Length = 462

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 129/347 (37%), Gaps = 39/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            P   Q  AI   L+          +     GSGKT    + +   +            +
Sbjct: 36  EPKPIQTQAIPSQLEGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTAR 89

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  + I+  +++  I   ++ G + +  + K +         ++I T 
Sbjct: 90  ALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATP 145

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPR 433
               D +        Q   L+L   D     G    +K   KAT       L +AT    
Sbjct: 146 GRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKE 205

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L      D  ++   P G     I  V+ P+   ++      ++     ++  +  +
Sbjct: 206 IASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTR 265

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +   ++  R          E     +A IHG  S   ++  ++ F++GT ++L+AT + 
Sbjct: 266 TKHGADAVVRH--------LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIA 317

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             GIDV  +S ++  +        +H++ GR GR     + I LY P
Sbjct: 318 ARGIDVPGSSHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 363


>gi|169607499|ref|XP_001797169.1| hypothetical protein SNOG_06807 [Phaeosphaeria nodorum SN15]
 gi|182676401|sp|Q0UN57|PRP5_PHANO RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|160701425|gb|EAT85458.2| hypothetical protein SNOG_06807 [Phaeosphaeria nodorum SN15]
          Length = 1184

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 133/371 (35%), Gaps = 45/371 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q  AI               I     GSGKTL   I M   V          G   
Sbjct: 567 PTAIQAQAIPIAESGRD------LIGVAKTGSGKTLAFGIPMIRHVLDQRPLKPADGPIG 620

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+AP   L+ Q    +K +   + I ++   G  P + +   ++R   G  HI+  T  
Sbjct: 621 LILAPTRELSLQIVNELKPFLNASGITIKCAYGGQPISDQIAMIKR---GGIHILCATAG 677

Query: 385 LFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
              D +Q        + ++  V++DE  R           K      +L +  P  +T++
Sbjct: 678 RLIDLLQSNSGRVLSFRRITYVVLDEADRMFDMGFEPQVMK------ILASIRPDRQTIL 731

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV--LSEGKKAYWICPQIEE 494
            ++     ++ +  K   +     +        E+ + + +V    E K A  +    + 
Sbjct: 732 FSATFPKTMAALARKALDKPAEVIIGGRSKVAPEITQHITIVPPSYEKKIAKLLHHLGQT 791

Query: 495 KKESNFRSV----------VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             +     V           +  + L +    ++  IHG     D+   ++ FK G   +
Sbjct: 792 FSDDENAQVLIFTERQETAEDLLSKLFKAKYFAVNTIHGAKDQTDRNEAINEFKQGLLNI 851

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPLSKN 603
           LIAT+V   G+DV   +++   +        +H+  GR GR       + L  +P   + 
Sbjct: 852 LIATSVAARGLDVPGLALVYNFDCPTHLEDYVHR-CGRTGRAGNKGLAVTLIENPGQERF 910

Query: 604 SYTRLSVLKNT 614
           +   +  LK +
Sbjct: 911 AVHIVKALKES 921


>gi|153824721|ref|ZP_01977388.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-2]
 gi|149741677|gb|EDM55706.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-2]
          Length = 406

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 131/337 (38%), Gaps = 30/337 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 22  EPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 75

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + +        +    + G + +A ++ AL        +I++ T     D 
Sbjct: 76  TRELAMQVSDVLTHVGTPLGLNTLCLCGGVDKAEQQNALAE----NPNILVATTGRLFDL 131

Query: 390 IQ----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            Q      ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 132 TQSGLSLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTASVRQTVMCSATFSDD 184

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 185 LKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 244

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S   +E+ +  FKNGT ++LIAT ++  GI +  
Sbjct: 245 AKENADSLTKKLNKAGIVATALHGDKSQTQREAALAEFKNGTTQVLIATDLLARGIHIEQ 304

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             ++I           +H++ GR  R  +    + L 
Sbjct: 305 LPVVINFELPMHAETYVHRV-GRTARAGQQGIALSLV 340


>gi|169850031|ref|XP_001831713.1| ATP-dependent RNA helicase ded-1 [Coprinopsis cinerea okayama7#130]
 gi|116507149|gb|EAU90044.1| ATP-dependent RNA helicase ded-1 [Coprinopsis cinerea okayama7#130]
          Length = 653

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 135/389 (34%), Gaps = 52/389 (13%)

Query: 265 ILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA--- 317
           +L NI F    +PT  Q+ +I  +            +     GSGKT   L  + +A   
Sbjct: 182 LLENIGFAMYTTPTPVQKYSIPIVAGGRD------LMACAQTGSGKTGGFLFPILSASFT 235

Query: 318 -----------------VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
                             +A   A+I+AP   L  Q +E  +K+   + +   ++ G   
Sbjct: 236 EGPRPPPETAAPTYGRARKAYPTALILAPTRELVSQIHEEARKFAYRSWVRPAVVYGGAD 295

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLT 415
              + + +ER       ++  T     D I+  ++ L  V     DE  R          
Sbjct: 296 INQQLRQIER----GCDLLSATPGRLVDLIERGRISLANVKYLVLDEADRMLDMGFEP-- 349

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
           Q         M      +TL+ ++    DI  +  +   +  I   +  +    E I + 
Sbjct: 350 QIRRIVQGEDMPGVNDRQTLMFSATFPRDIQMLA-RDFLKDYIFLSVGRVGSTSENITQK 408

Query: 476 KVVLSEGKKAYWICPQIEEKKESNF---------RSVVERFNSLHEHFTSSIAIIHGRMS 526
              + +G K   +   +  + + +          + + +  +            IHG  +
Sbjct: 409 IEYVEDGDKRSVLLDILASQSKEDMGLTLVFVETKRMADMLSDFLIGNNMPATSIHGDRT 468

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
             ++E  + +F+ G   +++AT V   G+D+ + + ++  +        +H++ GR GR 
Sbjct: 469 QREREMALQTFRTGRTPIMVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRI-GRTGRA 527

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTE 615
             +      ++          + +L+   
Sbjct: 528 GNVGVSTAFFNRGNKNIVRDLVELLREAN 556


>gi|328552138|gb|AEB22630.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens TA208]
          Length = 494

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/376 (19%), Positives = 136/376 (36%), Gaps = 37/376 (9%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           +  + F   T  Q   I   L +         I Q   G+GKT    I +   +      
Sbjct: 18  INRMGFEEATPIQAQTIPLGLLNKDV------IGQAQTGTGKTAAFGIPLVEKMNPESPN 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++AP   LA Q  E + K  Q+ +  V  I G      + +AL++      HII+G
Sbjct: 72  IQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKK----NPHIIVG 127

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-- 429
           T     D I    + L  V        DE    G    +   L+   +    LL +AT  
Sbjct: 128 TPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMP 187

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            PI R +    + + +  K+  K      I+   + +    +     +++  +  +   +
Sbjct: 188 APIKR-IAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIV 246

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +       R V E   +L+    ++  I HG ++   +   +  FK G  ++L+AT
Sbjct: 247 FGRTK-------RRVDELAEALNLRGYAAEGI-HGDLTQAKRMVALRKFKEGAIEVLVAT 298

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+   + +   +      + +H++ GR GR  +    +    P          
Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRI-GRTGRAGKTGMAMTFITPREKSMLRAIE 357

Query: 609 SVLKNTEDGFLIAEED 624
              K   D       D
Sbjct: 358 QTTKRKMDRMKEPTLD 373


>gi|298293432|ref|YP_003695371.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296929943|gb|ADH90752.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 557

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 128/357 (35%), Gaps = 27/357 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           +PT  Q  A+  +L           +     G+GKT    + +   +            +
Sbjct: 29  TPTPIQAQAVPQVLAGRD------LVGIAQTGTGKTAAFALPILHHLVTKRLRPERRSAR 82

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A++++P   L+ Q  E  + Y ++ +    +  G +P   + ++L     G   +++ T 
Sbjct: 83  ALVLSPTRELSGQILESFRLYGKHVRPSTALAIGGVPIGRQARSLA----GGVDVLVATP 138

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D ++   + L +V+        Q L +        ++        R L  ++    
Sbjct: 139 GRLVDLLENNAVRLDMVEVFVLDEADQMLDMGFIHAIRSIVARLPH-KRRNLFFSATMPR 197

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------E 497
           +I K+ +      P++  + P+ +  + IE+         K   +   + E         
Sbjct: 198 EIEKLADT-LLSDPVRVAVTPVAKTADKIEQKVFFTDRAGKPNLLVEVLGEPTLDRALVF 256

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S  +   +R          +   IHG  S   +E  + +F+ G  K+L+AT +   GIDV
Sbjct: 257 SRTKHGADRVVKSLAGAGINAEAIHGNKSQPQRERALAAFRQGVVKVLVATDIAARGIDV 316

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
              S +I  +  +   + +H++ GR  R       I                ++K T
Sbjct: 317 PGVSHVINYDLPNVPESYVHRI-GRTARAGREGIAISFCDGEERPFLRDIERLIKLT 372


>gi|261325143|ref|ZP_05964340.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261752356|ref|ZP_05996065.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261301123|gb|EEY04620.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261742109|gb|EEY30035.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
          Length = 462

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 128/347 (36%), Gaps = 39/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            P   Q  AI   L+          +     GSGKT    + +   +            +
Sbjct: 36  EPKPIQTQAIPSQLEGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTAR 89

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  + I+  +++  I   ++ G + +  + K +         ++I T 
Sbjct: 90  ALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATP 145

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPR 433
               D +        Q   L+L   D     G    +K   KAT       L +AT    
Sbjct: 146 GRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKE 205

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L      D  ++   P G     I  V+ P+   ++      ++     ++  +  +
Sbjct: 206 IASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTR 265

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +   ++  R          E     +A IHG  S   ++  ++ F++GT ++L+AT + 
Sbjct: 266 TKHGADAVVRH--------LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIA 317

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 318 ARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 363


>gi|260943624|ref|XP_002616110.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238849759|gb|EEQ39223.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 477

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/341 (18%), Positives = 127/341 (37%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT  Q  AI   L+          I     GSGKT    I +  ++   +     ++++
Sbjct: 87  KPTPIQAEAIPHALEGKDV------IGLAVTGSGKTAAFAIPILQSLWHDQLPYYCLVLS 140

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  +          +    I G M    + + L R    + H+I+ T     D
Sbjct: 141 PTRELAYQIKDTFDALGSGMGLRACCIVGGMDMMDQARDLMR----KPHVIVATPGRIVD 196

Query: 389 SIQY------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            +++        L  +++DE        RL           +L        T + ++   
Sbjct: 197 HLEHTKGFSLKNLKYLVMDEAD------RLLDLDFGPELDKILRVIPRERNTYLFSATMT 250

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE------KK 496
             I K+ ++ +   P++  +    +  + + +  +++S+G K  ++   + E        
Sbjct: 251 NKIEKL-QRASLNNPVRIAVSSKYQTADNLVQSMMLVSDGYKNTYLVHLLNEFVGKSIII 309

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +   +  +R   L      S   +HG++S   +   ++ FK+G   +L+AT V   G+D
Sbjct: 310 FTRTCAHSQRTALLARILGFSAVPLHGQLSQSQRLGSLNKFKSGKANILVATDVAARGLD 369

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +    ++I  +      A +H++ GR  R       I L  
Sbjct: 370 IPAVDVVINYDIPTDSKAYIHRV-GRTARAGRSGKSISLVT 409


>gi|172061278|ref|YP_001808930.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171993795|gb|ACB64714.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 511

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 126/364 (34%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 55  TPTPIQAQAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPQASTSASPARH 108

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 109 PVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRR----GVEILI 164

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 165 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 224

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    +    +  ++  +   D+    ++++   G K   +
Sbjct: 225 SPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHGAVVQLLRDRGLKQVLV 284

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      + IHG  S +++   +D+FK G  + L+AT
Sbjct: 285 F--------CNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVAT 336

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 337 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGATGDALSLCSPNERKQLADIE 395

Query: 609 SVLK 612
            ++K
Sbjct: 396 KLIK 399


>gi|197251196|ref|YP_002146376.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197214899|gb|ACH52296.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 457

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 79/458 (17%), Positives = 167/458 (36%), Gaps = 58/458 (12%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVTLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKETVSLDAL-HILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   ++P++  I  ++ +   IE+     S  +K   +   + + +    
Sbjct: 187 WPEAIAAISGR-VQQQPMRIEIDTVDALP-AIEQQFFETSAHEKISLLQTLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+  
Sbjct: 305 LDIKSLELVVNYELAWDPEVHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQLK 363

Query: 615 EDGF-LIAEEDL------------------KQRKEGEILGIKQSGMPKFLIAQP------ 649
            +     A + L                  K R  G+ILG   +G      A        
Sbjct: 364 LNWLNAPARQSLLPLAAEMATLCIDGGKKAKMR-PGDILGAL-TGDIGLDGADIGKINVH 421

Query: 650 --ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
              ++ ++ +   + A   L        ++G+S R+ L
Sbjct: 422 PMHVYVAVRQAVAQKAWKQLQN----GKIKGKSCRVRL 455


>gi|330812324|ref|YP_004356786.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380432|gb|AEA71782.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 622

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/378 (18%), Positives = 131/378 (34%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGHPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L    K   +   I 
Sbjct: 187 NLLFSATFSKDITDLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +        IHG  S   +   +  FK G  ++L+A
Sbjct: 246 AGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEVRILVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|304557826|gb|ADM40490.1| Cold-shock DEAD-box protein A [Edwardsiella tarda FL6-60]
          Length = 621

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 136/370 (36%), Gaps = 44/370 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q + I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAACIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLNNIDPSLKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   I V  + G      R     R       I++
Sbjct: 75  PQVLVLAPTRELAVQVAEAMADFSKHMHGINVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++           L+L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   T +  + + + ++  L+    +   
Sbjct: 191 PEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWT-VYGMRKNEALVRFLEAEDFDAAI 249

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +               + +E   +L  +  SS A+ +G M+   +E  ++  K+G   +
Sbjct: 250 IFV----------RTKNATLEVAEALERNGYSSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVDRISLVVNYDIPMDAESYVHRI-GRTGRAGRAGRALLFVDNRERRLL 357

Query: 605 YTRLSVLKNT 614
                 +K T
Sbjct: 358 RNIERTMKLT 367


>gi|291086515|ref|ZP_06356033.2| ATP-dependent RNA helicase DeaD [Citrobacter youngae ATCC 29220]
 gi|291067655|gb|EFE05764.1| ATP-dependent RNA helicase DeaD [Citrobacter youngae ATCC 29220]
          Length = 658

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 164/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 38  LNDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 91

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 92  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 147

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW--GMRKNEAL--VRFLEAEDFD 263

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     SS A+ +G M+   +E  ++  K+G   +
Sbjct: 264 AAIIFVRTKN-------ATLEVAEALERSGYSSAAL-NGDMNQSLREQTLERLKDGRLDI 315

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 316 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 374

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 375 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAQIQP 429

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ D+ ++    +++ 
Sbjct: 430 TAE---GEELDMETLAAALLKMA 449


>gi|290474026|ref|YP_003466900.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus bovienii SS-2004]
 gi|289173333|emb|CBJ80110.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus bovienii SS-2004]
          Length = 459

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 121/345 (35%), Gaps = 38/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+ AI  +L           +     G+GKT    + +   +             
Sbjct: 23  EPTPIQQQAIPVVLSGKD------LLASAQTGTGKTAGFTLPILQLLSESPAQAKGRRPV 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E +  Y++  ++   ++ G +    +   L     G   I++ T
Sbjct: 77  RALILTPTRELAAQVGENVCNYSKYLRLRSLVVFGGVSINPQMMKLR----GGVDILVAT 132

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D     ++    + ++I+DE  R      +           +L       + L+ 
Sbjct: 133 PGRLLDLEHQNAVDLSHVEILILDEADRMLDMGFIHDI------RRVLSKLPAKRQNLLF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    DI  +  K   R P+   +   N   E I++    + + +K   +   I  +  
Sbjct: 187 SATFSDDIKSLANK-LLRDPVSIEVARRNSASEQIDQAVHFVDKKRKGELLSYMIGNQNW 245

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +    R          + A IHG  S   +   +  FK+G  + L+AT + 
Sbjct: 246 QQVLVFTRTKHGANRLAEQLSQDGVTAAAIHGNKSQGARTRALADFKSGRIRALVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             G+D+     ++     +     +H++ GR GR E     I L 
Sbjct: 306 ARGLDIDQLPHVVNFELPNVAEDYVHRI-GRTGRAEATGQAISLV 349


>gi|117921047|ref|YP_870239.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613379|gb|ABK48833.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 449

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/391 (20%), Positives = 141/391 (36%), Gaps = 48/391 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ ++ Q +      +PT  QE A+   L           +     GSGKTL  L+  
Sbjct: 6   FSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKD------LMASSKTGSGKTLAFLLPA 59

Query: 315 AAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              V       +   + +I+ P   LA Q Y  ++    NTQ     + G      + KA
Sbjct: 60  MQRVISTRALTKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKAT 419
           L +    + H I+ T     D ++   L        +L   D     G   +LK    A 
Sbjct: 120 LAK----EPHFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAA 175

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG--RKPIKTVIIPINRIDEVIERLKV 477
                        +TL+ ++   +D S+I E  A   + P    I   +   + I +   
Sbjct: 176 DHKR--------RQTLMFSAT--LDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIY 225

Query: 478 VLSEGKKAYWICPQIEEKKESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           +         +  ++   +           R+  ER  S       + A + G +    +
Sbjct: 226 LCDHLDHKEALLTRLLSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAAR 285

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
             +MD F  G  ++L+ T V   G+D+++ S++I  +   F    +H++ GR GR     
Sbjct: 286 NQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKG 344

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
             I L  P    N       L+ T   F I+
Sbjct: 345 DAISLVGPKDWDNFKKVQLFLRKT---FEIS 372


>gi|302798402|ref|XP_002980961.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii]
 gi|300151500|gb|EFJ18146.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii]
          Length = 653

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 126/369 (34%), Gaps = 43/369 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q  A+  +L           I     GSGKT   ++ M   +          G   
Sbjct: 206 PTPIQCQALPIVLSGRD------IIGIAKTGSGKTAAFVLPMIVHIMDQEELGKGEGPIG 259

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI AP   LAQQ +   +K+ +   I V  + G M +  + K L+        I++ T  
Sbjct: 260 VICAPTRELAQQIFNESRKFAKPYGIRVSGVFGGMSKLDQFKELKAGCE----IVVATPG 315

Query: 385 LFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR- 433
              D ++   L        +L   D     G + +++    Q       LL +AT   R 
Sbjct: 316 RLIDMLKMKALTMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRRV 375

Query: 434 -TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            TL    L         E     + +  V   +    + ++ +   L +   A  +    
Sbjct: 376 ETLAREVLSAPVRVTAGEVGRANEDVTQVAQIVATDADKLQWMLSKLPQMVDAGDVLVFA 435

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +  VE      +     +A +HG      +  V+  FK+G   +L+AT V  
Sbjct: 436 ST------KVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLVATDVAA 489

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+     ++  +        +H++ GR GR  +            +  +        
Sbjct: 490 RGLDIKSIKTVVNYDTAKDMDTHVHRV-GRTGRAGDKEGVAY------TLVTQKEARFAG 542

Query: 613 NTEDGFLIA 621
           +  +GF+ A
Sbjct: 543 DLVNGFVAA 551


>gi|221107786|ref|XP_002161873.1| PREDICTED: vasa-related protein CnVAS1 [Hydra magnipapillata]
          Length = 797

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 78/390 (20%), Positives = 137/390 (35%), Gaps = 49/390 (12%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           N++  I + + +     PT  Q+ AI  I  +         +     GSGKT   LI + 
Sbjct: 359 NIDRTILENVEKAHYIKPTPVQKYAIPIITGNRD------LMSCAQTGSGKTAAFLIPVL 412

Query: 316 AAVEA-------------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
             +                  A+++AP   LA Q  +  +K+ QNT I   +I G +   
Sbjct: 413 NTLMQFRSELTSSLSEVQAPLALVIAPTRELAVQIQKEARKFAQNTSIKPVVIYGGV--- 469

Query: 363 HRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQ- 416
            +     R      H+++GT    +D      I    L  +I+DE  R      L   + 
Sbjct: 470 -QVAYHLRQVQQGCHLLVGTPGRLKDFLGKRKISLANLKYLILDEADRMLDMGFLPEIKA 528

Query: 417 --------KATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                        H L+ +AT     + L    L +     I +       I   I+ + 
Sbjct: 529 IINDFDMPPKEDRHTLMFSATFPTEIQNLAAEFLNNYVYLTIGKVGGTHSDITQCIMEVE 588

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
              +  + ++++ +EG     +  Q         + + +   S           IHG   
Sbjct: 589 ESAKRDKLIEILDTEGTNRNLVFVQT--------KRLADFLASYLCQNGFHTTSIHGDRL 640

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR- 585
              +E  +  FK GT  +LIAT V   G+D+ D   +I  +        +H++ GR GR 
Sbjct: 641 QQQREEALAEFKAGTQHVLIATAVAARGLDIADVKQVINYDLPDEIEEYIHRI-GRTGRI 699

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           G +  +            +   +  L + E
Sbjct: 700 GNKGKAISFFTRGKDEGLARALVKTLADAE 729


>gi|126134609|ref|XP_001383829.1| ATP-dependent RNA helicase CA3 of the DEAD/DEAH box family
           [Scheffersomyces stipitis CBS 6054]
 gi|146286101|sp|A3LRW2|DBP3_PICST RecName: Full=ATP-dependent RNA helicase DBP3
 gi|126095978|gb|ABN65800.1| ATP-dependent RNA helicase CA3 of the DEAD/DEAH box family
           [Scheffersomyces stipitis CBS 6054]
          Length = 526

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/373 (21%), Positives = 144/373 (38%), Gaps = 41/373 (10%)

Query: 265 ILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EA 320
           ++   P +PT  Q  A   +L           I   + GSGKT    +     +    ++
Sbjct: 132 VVNKFP-TPTPIQSVAWPYLLSGKDV------IGVAETGSGKTFAFGVPAINNILTLGKS 184

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G   + ++P   LA Q Y+ +   T NT +    + G +P+  + K L+      A++++
Sbjct: 185 GLSVLCISPTRELASQIYDNLVDLTSNTNVKCVCVYGGVPKHDQVKNLK-----NANVVV 239

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT---QKATAPHVLLMTAT 429
            T     D I+           L+L   D     G +  +K      K      L+ TAT
Sbjct: 240 ATPGRLLDLIEDGAVNLGTVDYLVLDEADRMLETGFEDAIKAIIGGTKKENRQTLMFTAT 299

Query: 430 PIPRTLVLTSLGDIDISKI-----TEKPAG--RKPIKTVIIPINRIDEVIERLKVVLSEG 482
                  L S       K+      E  A      I  VI P ++  +++  L+   S  
Sbjct: 300 WPQEVRKLASTFMNQPVKVSIGDRDELAANKRITQIVEVIEPFDKEKKLLGLLRQYQSGS 359

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           KK   +      KKE+       R   L    + ++A IHG +S   + + ++SFK G  
Sbjct: 360 KKNDKVLIFALYKKEAT------RIEGLLRRNSYNVAAIHGDLSQQQRTNALNSFKKGES 413

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+AT V   G+D+ +  ++I           +H++ GR GR  +  +   L+      
Sbjct: 414 SLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRI-GRTGRAGQTGTAHTLFTEHEKH 472

Query: 603 NSYTRLSVLKNTE 615
            S   +++L+   
Sbjct: 473 LSGALMNILRGAN 485


>gi|324502652|gb|ADY41165.1| ATP-dependent RNA helicase an3 [Ascaris suum]
          Length = 656

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/392 (16%), Positives = 138/392 (35%), Gaps = 50/392 (12%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
               Q+ +R   +S PT  Q+ +I  +   M +++ M        GSGKT   LI +   
Sbjct: 114 HPWVQENIRKSGYSKPTPVQKYSIPTL---MQRRDVMS---CAQTGSGKTAAFLIPLINQ 167

Query: 318 VEAGGQ-------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           +   G                    A+I+AP   LA Q ++   K+   T I   I+ G 
Sbjct: 168 ILRNGPDAIRPPQLMNNGRRAMFPVALILAPTRELAMQTHKEALKFGYRTNITSAILYGG 227

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQ 410
               + R  + ++  G  HI+I T     D ++           L+L   D     G + 
Sbjct: 228 R--ENYRDQINKLRIG-CHILIATPGRLLDVVRQGYVLLQECTFLVLDEADRMLDMGFEP 284

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
           +++   +        M       T + ++    +I  + +       +   +  +    E
Sbjct: 285 QIRQIVEQNGMPQKGM-----RVTAMFSATFPKEIQVLAQDFLLPNYVFLAVGRVGSTSE 339

Query: 471 VIERLKVVLSEGKKAYWICPQIE-------EKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
            I +  + + E +K  ++   ++              +          +    ++  IHG
Sbjct: 340 NIIQKVLWVEEHEKKNFLMELLDADANKGLTLVFVETKRGANDLAWFLQRNNYNVVPIHG 399

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +   ++E  ++ F+ G   +L+AT V   G+D+ +   +I  +        +H++ GR 
Sbjct: 400 DLKQFERERHLEMFRTGEANVLVATAVAARGLDIPNVKHVINFDLPSDIDEYVHRI-GRT 458

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           GR   +      ++            +L  + 
Sbjct: 459 GRVGNVGQATSFFNDKNRNLGRDLAELLVESN 490


>gi|257470192|ref|ZP_05634283.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185]
 gi|317064408|ref|ZP_07928893.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313690084|gb|EFS26919.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 527

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/342 (19%), Positives = 124/342 (36%), Gaps = 34/342 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           I Q   G+GKT    + +    E G   QA+++AP
Sbjct: 27  KPTPIQALTIPALLDGEK-----DIIGQAQTGTGKTAAFSLPILERFEPGKVVQAIVLAP 81

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +       +I +  + G      + + L++       II+GT     D 
Sbjct: 82  TRELAIQVAEEMNSLANGKKIRITPVYGGQSIEFQIRQLKK----GTDIIVGTPGRVMDL 137

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPRTLVLTS 439
           +    + L  +        DE    G  + ++   ++T     +L  +AT     L +  
Sbjct: 138 MDRKLIKLDNLKYFILDEADEMLNMGFLEDVEKILESTNDEKRMLFFSATMPNEILKVAK 197

Query: 440 LGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIEEKK 496
               D   +    +         +   ++  D+     +++ L++       C    +  
Sbjct: 198 KHMRDYEVLAVKTRELTTDLTDQIYFEVHERDKFEALCRIIDLTKDFYGIVFCRTKNDVN 257

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           +   +     +++           +HG +S   +E  +  FK     +L+AT V   GID
Sbjct: 258 DVVGKLNDRGYDA---------EGLHGDISQNYREVTLKRFKAKKINVLVATDVAARGID 308

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           V D S +I  +      + +H++ GR GR  +  + I    P
Sbjct: 309 VNDLSHVINYSIPQEAESYVHRI-GRTGRAGKEGTAITFITP 349


>gi|241953571|ref|XP_002419507.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
 gi|223642847|emb|CAX43102.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
          Length = 667

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 131/376 (34%), Gaps = 49/376 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA-AVEAGG-------- 322
            PT  Q+ ++  +            +     GSGKT   L  + + +   G         
Sbjct: 209 KPTPVQKYSVPIVAAGRD------LMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESNG 262

Query: 323 ---------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                      ++MAP   L  Q YE  KK++  + +   ++ G      + + ++R   
Sbjct: 263 AFSSHKVYPTTLVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDR--- 319

Query: 374 GQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
               +++ T    +D +   K        L+L   D     G + +++            
Sbjct: 320 -GCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYI-----VDECD 373

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M A    +TL+ ++    DI  +  +   +  I   +  +    E I +  + + + +K 
Sbjct: 374 MPAVKDRQTLMFSATFPRDIQMLA-RDFLKDYIFLSVGRVGSTSENITQKILYVEDDEKK 432

Query: 486 YWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             I   +   +       +  + + +               IHG  S  ++E  + +FKN
Sbjct: 433 SVILDLLSANENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKN 492

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+ + S +I  +        +H++ GR GR   +      ++  
Sbjct: 493 GAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRI-GRTGRAGNVGIATAFFNRN 551

Query: 600 LSKNSYTRLSVLKNTE 615
                   + +L    
Sbjct: 552 NKNIVKGLVELLSEAN 567


>gi|254456111|ref|ZP_05069540.1| ATP-dependent RNA helicase RhlE [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083113|gb|EDZ60539.1| ATP-dependent RNA helicase RhlE [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 536

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 135/369 (36%), Gaps = 42/369 (11%)

Query: 250 EIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
                +    +  +  L  + F+ PT  Q  AI   L+          +     G+GKTL
Sbjct: 1   MENFKLLKIEESLKNSLNKMNFTKPTPIQGMAIPAALEGKD------ILGTAQTGTGKTL 54

Query: 309 VALIAMAA--AVEAGGQAVIMAPIGILAQQHYEFIKKY-TQNTQIIVEIITGNMPQAHRR 365
              I +     ++    A++M P   LA Q  E IK   +    I   ++ G      + 
Sbjct: 55  AFSIPLINKLILDKNAFALVMCPTRELATQVMEAIKSIISDKINIKTALLIGGESMQKQL 114

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGV--QQRLKLT 415
           + L   +     II+GT     D ++   L        +L   D     G   Q  + L 
Sbjct: 115 RQLGNRSR----IIVGTPGRINDHLKRKSLNLSATKYLVLDETDRMLDMGFTPQIEMVLK 170

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE----KPAGRKPIKTV-IIPINRIDE 470
                   LL +AT     L ++        +I+      P  +   +T+ +   N+ DE
Sbjct: 171 FVPKDHQTLLFSATLPQNILRISERYLHKPERISTGATSVPIAKIKQETLQVFKENKYDE 230

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           +I++         +   I   ++ K     RS  +    L E   S+  I HG +    +
Sbjct: 231 LIDQFLA------RKGSILVFVKTK-----RSADKMVKRLKEEGHSADGI-HGDLRQSKR 278

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + V++SF+ G  ++LIAT V   G+D+     +I  +        +H++ GR  R     
Sbjct: 279 DRVINSFRKGLKRILIATDVAARGLDIPLIQHVINYDLPQVPEDYVHRI-GRTARAGSEG 337

Query: 591 SCILLYHPP 599
           S +    P 
Sbjct: 338 SALTFLTPD 346


>gi|167753303|ref|ZP_02425430.1| hypothetical protein ALIPUT_01576 [Alistipes putredinis DSM 17216]
 gi|167659234|gb|EDS03364.1| hypothetical protein ALIPUT_01576 [Alistipes putredinis DSM 17216]
          Length = 476

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 126/363 (34%), Gaps = 43/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAV 325
             T  QE  I  IL           I     G+GKT    + +   +   G      ++V
Sbjct: 23  EMTPVQEQTIPIILDGRD------IIACAQTGTGKTAAYTLPLLNRLLLEGNEKNVVKSV 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ     + ++    +   +I G        +    +  G A ++I T   
Sbjct: 77  IIVPTRELAQQIDMQFQGFSYYMPVSTAVIYGGGDGRGWDQQKRGLQMG-ADVVIATPGR 135

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTL 435
               +   +        LIL   D     G    +         +   L+ +AT  P+  
Sbjct: 136 LISHLMNSRVDLSHVDYLILDEADRMLDMGFYDDIMQIVSYMPKSRQTLMFSATLPPKIR 195

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE-- 493
            +      D +++              I I++ +E IE+   +  EG+K   +       
Sbjct: 196 QMAKQILNDPAEVN-------------IAISKPNEAIEQGAYICYEGQKLGIVREMFSWP 242

Query: 494 -EKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            E K   F S  ++   L          +A +H  +    +E VM  FKN   ++L+AT 
Sbjct: 243 SESKTIIFSSSKQKVKELAHTLKRMKLDVAPMHSDLDQEKREQVMLDFKNNKVRILVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           ++  GID+ D  ++I  +  H     +H++ GR  R       +   +       +    
Sbjct: 303 IVARGIDIEDIGMVINYDVPHDPEDYIHRI-GRTARASATGRAVTFVNEEEQGKFHRIEE 361

Query: 610 VLK 612
            ++
Sbjct: 362 FIE 364


>gi|167624931|ref|YP_001675225.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167354953|gb|ABZ77566.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 436

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 128/346 (36%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           SPT  Q   I  IL       +   I     G+GKT   ++ +   +           +A
Sbjct: 23  SPTPIQAKTIPVILS------QRNLIAAAQTGTGKTASFVLPILEMLSRSETQRKKRIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + I +Y ++  +    + G +    +R+ L         I++ T  
Sbjct: 77  LILTPTRELAVQVEDNISQYGKHLALTSMAMYGGVDSKPQRERLIE----GVDILVATPG 132

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I + +L ++++DE  R      ++   K       +M   P+ R  +L S
Sbjct: 133 RLLDMYTQRAIHFDELEILVLDEADRMLDMGFIEDINK-------IMEKLPVDRQTLLFS 185

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                  K   +    +PI+  +         IE+  V + + KK+  +   I+E     
Sbjct: 186 ATLSRQVKELARATIVRPIEISVTHNTDNKPKIEQWLVTVDKDKKSALLSHLIQENNWQQ 245

Query: 500 FRSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               +E       L             IHG  S   +E ++  FK G   LLIAT +   
Sbjct: 246 ALIFIETKQGAAKLVSQLEKRGITAECIHGGRSQEIREQILADFKAGKIGLLIATGIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+ +  ++I  +  +     +H++ GR GR       + L    
Sbjct: 306 GLDIDELPLVINYDLPYPADDYIHRI-GRTGRAGASGEAVALVSKD 350


>gi|145353098|ref|XP_001420866.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581101|gb|ABO99159.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 404

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 132/371 (35%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+ A+  I+           I Q   G+GKT +  +A+   ++      Q ++++
Sbjct: 53  KPSAIQQRAVVPIISGRDV------IAQAQSGTGKTSMISLALCQMLDTTSREVQGLVLS 106

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  +          + V    G        + L+       HI+ GT     D
Sbjct: 107 PTRELAVQTEKTALSLGNFMNVQVHACIGGRSIGDDIRKLDY----GCHIVSGTPGRVFD 162

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++            V+L++AT     L +T
Sbjct: 163 MIKRRNLRTRGIKILVLDEADEMLNKGFKEQIYDVYRYLPPETQVVLVSATLPNEVLEMT 222

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    D  +I  K      + IK   + + R +   + L  +       +A   C     
Sbjct: 223 SKFMTDPMRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT--- 279

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+           +++ +HG M   ++E +M+ F+ GT ++LI T V   G
Sbjct: 280 ------KKKVDWLTEKMRQNNFTVSAMHGDMPQKEREEIMNEFRGGTTRVLITTDVWARG 333

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV   S++I  +        +H++ GR GR       I        +            
Sbjct: 334 IDVQQVSLVINYDLPGNRENYIHRI-GRSGRYGRKGVAINFVKADDVRALRDIEQYYSTQ 392

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 393 IDEMPMNVADL 403


>gi|87121447|ref|ZP_01077336.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
 gi|86163290|gb|EAQ64566.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
          Length = 418

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 125/365 (34%), Gaps = 46/365 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q  AI  +L +         +     G+GKT    + +   +    Q        
Sbjct: 23  TPTPIQLEAIPAVLANKDV------MAGAQTGTGKTAAFALPLLHRLFEAHQIENPEPNN 76

Query: 324 ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               +++ P   LAQQ Y+    Y Q   +   +  G      +   + +       +++
Sbjct: 77  QVSVLVLTPTRELAQQVYKSFCDYGQALPLRSVVAYGGASINPQIDEIRQ----GVDVLV 132

Query: 381 GTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            T     + +        Q   L+L   D     G    ++   K               
Sbjct: 133 ATPGRLLELVMKDLVDVSQLKTLVLDEADRMLDMGFIIDIQRILKRLPQQ---------K 183

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL  ++  D  I K++ K   + P+   +   N   E +E++   + + KK+  I   I
Sbjct: 184 QTLFFSATFDDAIFKLS-KTLLQDPVLIEVDQRNTSAEQVEQIFYAVDKEKKSGLISYLI 242

Query: 493 EEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             K           +   +R     +        IHG  S   ++ V+ +FK G  + L+
Sbjct: 243 GSKNWQQVLIFTRTKEGADRLAKEMKKDGIETQAIHGDKSQGARDRVLAAFKAGELRALV 302

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+   S +I     +     +H++ GR GR  +    + L     +     
Sbjct: 303 ATDVAARGLDIEALSYVINHELPYNAEDYIHRI-GRTGRAGQSGLAVSLLSEKENYLLKD 361

Query: 607 RLSVL 611
              +L
Sbjct: 362 IEKLL 366


>gi|298207628|ref|YP_003715807.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus
           HTCC2559]
 gi|83850264|gb|EAP88132.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus
           HTCC2559]
          Length = 424

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 140/379 (36%), Gaps = 38/379 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N+   I + +       PT  Q  +I  IL+          +     G+GKT    I +
Sbjct: 6   LNIISPILKSLDEQGYEKPTSIQARSIPLILKGEDV------LGSAQTGTGKTGAFAIPI 59

Query: 315 AAAVEA------GGQ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
              +        G +   ++I+ P   LA Q  E    Y + T +   +I G +PQ  + 
Sbjct: 60  IQHLANDLENAKGKRKILSLIVTPTRELAIQIGENFSAYGKYTSLKSTVIFGGVPQRAQT 119

Query: 366 KALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
             L+        ++I T     D      I    +   ++DE  R      +   +K   
Sbjct: 120 NKLKS----GVDVLIATPGRLLDLMDQGYISLKDVKYFVLDEADRMLDMGFIHDIKK--- 172

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              LL       ++L  ++    +I  ++ +   + P K  + P++   E I++     +
Sbjct: 173 ---LLTKLPKNRQSLFFSATMPKNILTLSNQ-ILKNPKKVEVNPVSSTAETIQQYLYTTN 228

Query: 481 EGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           +  K   +   +E+ K          +   +R            A IHG  S   ++  +
Sbjct: 229 KTNKGDLLLHILEDPKIDQVLVFSKTKHGADRTVRKLLKKKIKSAAIHGNKSQNQRQKAL 288

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
            +FK+G  ++++AT +   GID+     +I  +  +     +H++ GR GR  E    I 
Sbjct: 289 KAFKDGNIRVMVATDIAARGIDIDKLEYVINYDIPNEPETYVHRI-GRCGRAGEDGIAIS 347

Query: 595 LYHPPLSKNSYTRLSVLKN 613
           +  P   +       ++K 
Sbjct: 348 IGEPEEIQFIKDIEKLIKQ 366


>gi|156845404|ref|XP_001645593.1| hypothetical protein Kpol_1033p40 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380615|sp|A7TJ36|DBP3_VANPO RecName: Full=ATP-dependent RNA helicase DBP3
 gi|156116258|gb|EDO17735.1| hypothetical protein Kpol_1033p40 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 530

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 143/395 (36%), Gaps = 46/395 (11%)

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           +   +  +           Q  +   P  PT  Q  +   +L           I   + G
Sbjct: 110 KLNLRPLLSFSHISLDSRIQAEISKFP-KPTPIQAVSWPYLLAGKDV------IGVAETG 162

Query: 304 SGKTLVALIAMAAAV---------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEI 354
           SGKT    +     +         + G Q +I++P   LA Q Y+ +   T    +    
Sbjct: 163 SGKTFAFGVPAINNILTKSGSKPGKNGIQVLIISPTRELASQIYDNLVILTDKVGLECCC 222

Query: 355 ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQ 409
           + G +P+  +R  L+R       +++ T     D IQ        +  +++DE  R   +
Sbjct: 223 VYGGVPKDEQRTQLKRS-----QVVVATPGRLLDLIQEGAANLSNVNYLVLDEADRMLEK 277

Query: 410 QRLKLTQK------ATAPHVLLMTATPIPRTLVLTSLGDIDISKI-----TEKPAG--RK 456
              +  +       +T    L+ TAT       L S       K+      E  A     
Sbjct: 278 GFEEDIKNIIRETKSTGRQTLMFTATWPKEVRELASTFMNSPIKVSIGNTDELSANKRIT 337

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            I  VI P  +  +++E LK   S  KK   +      KKE+       R      +   
Sbjct: 338 QIVEVIDPFKKERKLLELLKKYQSGSKKDDKVLIFALYKKEA------ARVERNLNYNGY 391

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
            ++ IHG +S   + + +D FK G   +L+AT V   G+D+ +   +I           +
Sbjct: 392 KVSAIHGDLSQQQRTNALDEFKTGRSSILLATDVAARGLDIPNVKTVINLTFPLTVEDYV 451

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           H++ GR GR  +  +   L+       + + ++VL
Sbjct: 452 HRI-GRTGRAGKTGTAHTLFTEQEKHLAGSLVNVL 485


>gi|115398049|ref|XP_001214616.1| ATP-dependent RNA helicase ded1 [Aspergillus terreus NIH2624]
 gi|121737954|sp|Q0CLJ6|DED1_ASPTN RecName: Full=ATP-dependent RNA helicase ded1
 gi|114192807|gb|EAU34507.1| ATP-dependent RNA helicase ded1 [Aspergillus terreus NIH2624]
          Length = 674

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/381 (17%), Positives = 139/381 (36%), Gaps = 56/381 (14%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----------EA 320
            +PT  Q+ +I  +   M+ ++ M        GSGKT   L  + +             A
Sbjct: 207 LTPTPVQKYSIPIV---MNGRDLM---ACAQTGSGKTGGFLFPILSQAFQNGPSPTPAPA 260

Query: 321 GGQ------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
           GGQ            ++I+AP   L  Q ++  +K+   + +   ++ G      + + +
Sbjct: 261 GGQLGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQI 320

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKAT 419
           ER       +++ T     D I+  +        LIL   D     G + Q  ++ +   
Sbjct: 321 ER----GCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGED 376

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
            PHV         +TL+ ++    DI  +  +   +  +   +  +    E I +    +
Sbjct: 377 MPHV------NDRQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEYV 429

Query: 480 SEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
            +  K   +   +               + + +  +    +       IHG  +  ++E 
Sbjct: 430 EDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERER 489

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            ++ F++G C +L+AT V   G+D+ + + +I  +        +H++ GR GR       
Sbjct: 490 ALEMFRSGRCPILVATAVAASGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGIA 548

Query: 593 ILLYHPPLSKNSYTRLSVLKN 613
              ++          + +LK 
Sbjct: 549 TAFFNRGNRGVVRDLIDLLKE 569


>gi|89069624|ref|ZP_01156963.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus
           HTCC2516]
 gi|89044822|gb|EAR50922.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus
           HTCC2516]
          Length = 406

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/355 (17%), Positives = 123/355 (34%), Gaps = 28/355 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q  AI   L+          +     G+GKT    + +  A+ A G         
Sbjct: 23  APTPIQTQAIPHALEGRDV------LGLAQTGTGKTAAFGLPLIQALTAAGTHAAPNTVL 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           A+I+AP   LA Q  + ++ +  N     + ++ G      +  AL R       I++ T
Sbjct: 77  ALILAPTRELAAQIVDSLRAFAGNGGSPRIGLVVGGKSINAQANALRR----GTDILVAT 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D +    L L            Q L L        +  +      +T++ ++   
Sbjct: 133 PGRLIDLLDRKALTLGKARYLVLDEADQMLDLGFIHALRRIAPLL-PKERQTMLFSATMP 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
             +S+I        P++  + P  +  + +++    +++  K   +   ++  ++     
Sbjct: 192 KQMSEIAGAYLT-DPVRVQVSPPGKPADKVDQSVHFVAKDAKQALLIDLLDAHRDERALV 250

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   ER     +    + + IHG  S   +   +D F+ G  ++L+AT V   GID
Sbjct: 251 FARTKHGAERLMKQLDRAGFAASSIHGNKSQGQRNRALDGFREGKVRVLVATDVAARGID 310

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           +     +      +     +H++ GR  R       +                VL
Sbjct: 311 IPGVGYVYNYELPNVPENYVHRI-GRTARAGADGRAVAFCGEEEMGELRDIEKVL 364


>gi|330977878|gb|EGH77781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 445

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 139/365 (38%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA------AAVEAGGQAV 325
            PT  Q +AI   LQ    +      +    GSGKT   ++ +       A V    +AV
Sbjct: 22  EPTPVQAAAIPLALQGRDLR------VTAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAV 75

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + +++++Q T +   +ITG      +   L ++      I+IGT   
Sbjct: 76  ILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV----PDILIGTPGR 131

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPI---P 432
             + +    L L  V        D     G  + ++    + A     +L +AT      
Sbjct: 132 LLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGL 191

Query: 433 RTLVLTSLGDIDISKI---TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           R ++   L D    ++   +E  +G +            ++V+    ++ +E  +   I 
Sbjct: 192 REMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNW--LLANETYQKAIIF 249

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N R++ +R             ++HG     D+++ +D  K G  K+++AT 
Sbjct: 250 T--------NTRAMADRLYCRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATD 301

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV    ++I  +    G   +H++ GR GR       I L          +   
Sbjct: 302 VAARGLDVEGLDMVINFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICHGDWNLMSSVER 360

Query: 610 VLKNT 614
            LK +
Sbjct: 361 YLKQS 365


>gi|322831220|ref|YP_004211247.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321166421|gb|ADW72120.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 640

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/410 (18%), Positives = 150/410 (36%), Gaps = 40/410 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++A    
Sbjct: 22  LTDLGYEKPSPIQAECIPHLLSGRDV------LGMAQTGSGKTAAFSLPLLHNIDASLKA 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       +++
Sbjct: 76  PQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGG----QRYDVQLRALRQGPQVVV 131

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 132 GTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATM 191

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + D    +I      R  I      +  + +    ++ + +E   A  I
Sbjct: 192 PEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGLRKNEALVRFLEAEDFDAAII 251

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L     SS A+ +G M+   +E  ++  K+G   +LIAT
Sbjct: 252 FVRTKN-------ATLEVAEALERSGYSSAAL-NGDMNQALREQTLERLKDGRLDILIAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 304 DVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIE 362

Query: 609 SVLKNTEDGFLIA-EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             +K T     I   E L +R+  +     Q    +   +  + + +LL 
Sbjct: 363 RTMKLTIPEVEIPTAEVLGERRLAKFAAKVQ---QQLESSDLDQYRALLA 409


>gi|321250272|ref|XP_003191751.1| ATP-dependent RNA helicase ded1 [Cryptococcus gattii WM276]
 gi|317458218|gb|ADV19964.1| ATP-dependent RNA helicase ded1, putative [Cryptococcus gattii
           WM276]
          Length = 644

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/382 (17%), Positives = 141/382 (36%), Gaps = 56/382 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------E 319
           +PT  Q+ +I  +            +     GSGKT   L  + +A+            +
Sbjct: 182 TPTPVQKYSIPIVADGRD------LMACAQTGSGKTGGFLFPILSALFTYGPSAPPVEQD 235

Query: 320 AG----------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            G            A+++AP   L  Q +E  +K+   + +   ++ G      + +AL+
Sbjct: 236 TGYGYRRTKKVYPTALVLAPTRELVSQIHEEARKFAYRSWVRPAVVYGGADIGSQMRALD 295

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP 421
           R       ++  T     D I+  K        L+L   D     G + +++        
Sbjct: 296 R----GCDLLSATPGRLVDLIERGKISLANVKYLVLDEADRMLDMGFEPQIRRIVDEEDM 351

Query: 422 ------HVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                   L+ +AT     + L  + L +     +    +  + I   +  ++  D+   
Sbjct: 352 PGVLDRQTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQRVEYVDDQDKRSL 411

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L ++L+E +    I   +E       + + +           +   IHG  +  ++E+ 
Sbjct: 412 LLDLLLAE-QSGGLILVFVET------KRMADTLCDFLCSRRHNATSIHGDRTQREREAA 464

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           + +FK+G   +L+AT V   G+D+ + + +I+ +  +      H++ GR GR   + +  
Sbjct: 465 LYAFKSGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAEYTHRI-GRTGRAGNVGTST 523

Query: 594 LLYHPPLSKNSYTRLSVLKNTE 615
             ++   S      + +LK   
Sbjct: 524 AFFNRGNSNIGKDLIELLKEAN 545


>gi|258597823|ref|XP_001348611.2| helicase, putative [Plasmodium falciparum 3D7]
 gi|255528866|gb|AAN37050.2| helicase, putative [Plasmodium falciparum 3D7]
          Length = 527

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 141/375 (37%), Gaps = 57/375 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  Q       L           I + + GSGKTL  ++     + A        G  
Sbjct: 135 APTPIQIQGWPIALSGKD------MIGKAETGSGKTLAFILPAFVHILAQPNLKYGDGPI 188

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA+Q  +   K++  ++I      G +P++ +  AL++      HI+I   
Sbjct: 189 VLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQ----GVHILIACP 244

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D ++           L+L   D+    G + +++                P  +TL
Sbjct: 245 GRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIR---------PDRQTL 295

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPIN--------------RIDEVIERLKVVLSE 481
           + ++    ++  + +     +PI+  +  +                  E I  LK +L  
Sbjct: 296 MWSATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQR 355

Query: 482 GKK-AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
             K    I   +E KK ++F +   R + +          IHG     ++  V++ FK G
Sbjct: 356 IFKDNDRIIVFVETKKNADFITKALRLDGM------PALCIHGDKKQEERRWVLNEFKTG 409

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              ++IAT V   G+D+ +   +I  +  +     +H++ GR GR     +         
Sbjct: 410 KSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRI-GRTGRAGSHGASFTFLTADK 468

Query: 601 SKNSYTRLSVLKNTE 615
            + +   + +L+ +E
Sbjct: 469 YRLAKDLVKILRESE 483


>gi|12325365|gb|AAG52624.1|AC024261_11 photosystem II protein psbT, putative, 5' partial; 92652-90780
           [Arabidopsis thaliana]
          Length = 347

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 130/343 (37%), Gaps = 37/343 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           ++ Q+ A+  IL+          I Q   G+GKT +  I++   V       Q ++++P 
Sbjct: 1   SEIQQRALVPILKGRDV------IAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPS 54

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  + I+    +T I      G        K LER      H + GT     D I
Sbjct: 55  RELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLER----GVHAVSGTPGRVYDMI 110

Query: 391 QYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIPRTLVLTSL 440
           +   L        +L   DE    G++ ++    +A    +   L++AT     L +T  
Sbjct: 111 KRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEK 170

Query: 441 GDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEEKK 496
              D  +I  KP     + IK   + +++ +   + L  +       +A   C       
Sbjct: 171 FMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCNT----- 225

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               R  V+            ++ +HG     +++ +M+ F++   ++LIA+ V   GID
Sbjct: 226 ----RQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGID 281

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S +I  +  +     +H++ GR GR       I      
Sbjct: 282 VQTVSHVINYDIPNNPELYIHRI-GRAGRFGREGVAINFVKSS 323


>gi|10039329|dbj|BAB13307.1| vasa-related protein CnVAS1 [Hydra vulgaris]
          Length = 797

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 78/390 (20%), Positives = 137/390 (35%), Gaps = 49/390 (12%)

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
           N++  I + + +     PT  Q+ AI  I  +         +     GSGKT   LI + 
Sbjct: 359 NIDRTILENVEKAHYIKPTPVQKYAIPIITGNRD------LMSCAQTGSGKTAAFLIPVL 412

Query: 316 AAVEA-------------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
             +                  A+++AP   LA Q  +  +K+ QNT I   +I G +   
Sbjct: 413 NTLMQFRSELTSSLSEVQAPLALVIAPTRELAVQIQKEARKFAQNTSIKPVVIYGGV--- 469

Query: 363 HRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQ- 416
            +     R      H+++GT    +D      I    L  +I+DE  R      L   + 
Sbjct: 470 -QVAYHLRQVQQDCHLLVGTPGRLKDFLGKRKISLANLKYLILDEADRMLDMGFLPEIKA 528

Query: 417 --------KATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
                        H L+ +AT     + L    L +     I +       I   I+ + 
Sbjct: 529 IINDFDMPPKEDRHTLMFSATFPTEIQNLAAEFLNNYVYLTIGKVGGTHSDITQCIMEVE 588

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMS 526
              +  + ++++ +EG     +  Q         + + +   S           IHG   
Sbjct: 589 ESAKRDKLIEILDTEGTNRNLVFVQT--------KRLADFLASYLCQNGFHTTSIHGDRL 640

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR- 585
              +E  +  FK GT  +LIAT V   G+D+ D   +I  +        +H++ GR GR 
Sbjct: 641 QQQREEALAEFKAGTQHVLIATAVAARGLDIADVKQVINYDLPDEIEEYIHRI-GRTGRI 699

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           G +  +            +   +  L + E
Sbjct: 700 GNKGKAISFFTRGKDEGLARALVKTLADAE 729


>gi|114046738|ref|YP_737288.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113888180|gb|ABI42231.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 409

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 128/367 (34%), Gaps = 40/367 (10%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
            +++  ++   +       PT  Q  AI  IL       +   +     G+GKT    + 
Sbjct: 5   ALSLHSQLVNTLAELGYLQPTPIQVEAIPAILA------KQDVMAGAQTGTGKTAAFALP 58

Query: 314 MAAAVE---------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           +   +             +A+++ P   LA Q  +   KY + T I V I  G +    +
Sbjct: 59  ILQQLLLDNESQDAPKDIRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIEAQ 118

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLK--L 414
           +   +        ++I T     D ++           L+    D     G    +K  L
Sbjct: 119 QAEFKA----GVDVLIATPGRLLDHLRQGVLNLKYLSVLVFDEADRMLDMGFMDEIKAVL 174

Query: 415 TQKATAPHVLLMTATPIPRTLVLT--SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            Q       LL +AT        +   L D  + ++ ++      ++  +  I+   +  
Sbjct: 175 KQVPAQRQTLLFSATLDDSIFGFSKNLLRDPKLIEVAKRNTTAAQVEQRVYAIDSDRKTE 234

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
               +V S+  +   I  +         +  V++  +       +    HG +S   +E 
Sbjct: 235 FVSHLVRSKNWQQVLIFSRT--------KQGVDKLTTQLNQLGVATQAFHGDLSQGAREK 286

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           V+  FK G  ++L+AT V   G+D+ D   +I           +H++ GR GR       
Sbjct: 287 VLKDFKQGLVQVLVATDVAARGLDIADLQYVINFELPFIAEDYIHRI-GRTGRAGSAGLA 345

Query: 593 ILLYHPP 599
           I L+   
Sbjct: 346 ITLFSQE 352


>gi|107023254|ref|YP_621581.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
 gi|116690337|ref|YP_835960.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|170733675|ref|YP_001765622.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|105893443|gb|ABF76608.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
 gi|116648426|gb|ABK09067.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
 gi|169816917|gb|ACA91500.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 520

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/368 (18%), Positives = 126/368 (34%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 55  TPTPIQAQAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 108

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 109 PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSAELRR----GVEILI 164

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATP 430
            T     D +Q           L+L   D     G    L+            LL +AT 
Sbjct: 165 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 224

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
                 L  T L +    ++    +    +  ++  +   D+    ++++   G K   +
Sbjct: 225 SGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIV 284

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      + IHG  + I++   +D+FK G  + L+AT
Sbjct: 285 F--------CNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEALVAT 336

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 337 DVAARGLDIAELPAVINFDLPFSAEDYVHRI-GRTGRAGATGDALSLCSPNERKQLADIE 395

Query: 609 SVLKNTED 616
            ++K   D
Sbjct: 396 KLIKRPLD 403


>gi|325690149|gb|EGD32153.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK115]
          Length = 523

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 132/362 (36%), Gaps = 32/362 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           +  QE  I   +           I Q   G+GKT          ++      QA+I+AP 
Sbjct: 25  SPIQEQTIPLAMAGKDV------IGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
           +   L L      I+DE         L+  +        +++  P  R  +L S    D 
Sbjct: 135 KRKALKLNRIETLILDEADEMLNMGFLEDIES-------IISRVPEERQTLLFSATMPDA 187

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------N 499
            K       ++P    I       E++++  + + E +K   +   ++ ++         
Sbjct: 188 IKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGR 247

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +  V+      +        IHG +    +  V+  FKNG   +L+AT V   G+D+  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISG 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +   +      + +H++ GR GR  +    I    P          ++ K    G  
Sbjct: 308 VTHVYNYDIPQDPESYVHRI-GRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLK 366

Query: 620 IA 621
            A
Sbjct: 367 PA 368


>gi|161506153|ref|YP_001573265.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867500|gb|ABX24123.1| hypothetical protein SARI_04344 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 649

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 164/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 38  LNDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 91

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 92  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 147

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 263

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 264 AAIIFVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 315

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 316 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 374

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 375 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIKP 429

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 430 SAE---GEELDLETLAAALLKMA 449


>gi|107027528|ref|YP_625039.1| DEAD/DEAH box helicase-like [Burkholderia cenocepacia AU 1054]
 gi|105896902|gb|ABF80066.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
          Length = 507

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/378 (16%), Positives = 135/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L           +     G+GKT    + +   +   G        +
Sbjct: 46  TPTPVQAKAIPVVLGGKDV------MAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRAR 99

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +   +Y +   +      G +    +   L +       +++ T 
Sbjct: 100 VLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMKLRK----GVDVLVATP 155

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGV-----QQRLKLTQKATAPHVLLMTATPIPR 433
               D     ++Q+ ++  +++DE  R        +              LL +AT    
Sbjct: 156 GRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKRQTLLFSATFSDE 215

Query: 434 TLVLTSLGDIDISKITEKPAGRK--PIKTVIIPINRIDE-VIERLKVVLSEGKKAYWICP 490
              + +        I+  P       IK  ++P+++ ++  +    V  +  ++A     
Sbjct: 216 IRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDLFMHLVAQNRWERALVFV- 274

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     R+ V+    + E    ++  IHG      +   ++ FK G  ++L+AT V
Sbjct: 275 --------KTRNGVDYLALMLEKTGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDV 326

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D  ++I  +        +H++ GR GR       + L     +       ++
Sbjct: 327 AARGLDIDDLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEAL 385

Query: 611 LKNT-----EDGFLIAEE 623
           ++ T     E GF  AE 
Sbjct: 386 IRQTLRREEEPGFE-AEH 402


>gi|162382798|ref|YP_454063.2| ATP-dependent RNA helicase DeaD [Sodalis glossinidius str.
           'morsitans']
          Length = 622

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/377 (19%), Positives = 139/377 (36%), Gaps = 41/377 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L ++ +  P+  Q + I  +L           +     GSGKT    + +   ++   A 
Sbjct: 21  LTDLGYEKPSPIQSACIPHLLAGRDV------LGMAQTGSGKTAAFSLPLLHNIKPELAA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    + ++   + V  + G      R     R       +++
Sbjct: 75  PQVLVLAPTRELAVQVGEACADFAKHMKGVNVVALYGG----QRYDVQLRALRQGPQVVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   L Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENILAQVPAEHQTALFSATM 190

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + +    +I      R  I      +  + +    ++ + +E   A  I
Sbjct: 191 PEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAII 250

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L     +S A+ +G M+   +E  +D  K+G   +LIAT
Sbjct: 251 FVRTKN-------ATLEVAEALELSGYNSAAL-NGDMNQALREQTLDRLKDGRLDILIAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 303 DVAARGLDVDRISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 609 SVLKNTEDGFLIAEEDL 625
            ++K T     I E DL
Sbjct: 362 RIMKLT-----IPEVDL 373


>gi|149909603|ref|ZP_01898256.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
 gi|149807307|gb|EDM67260.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
          Length = 446

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/379 (17%), Positives = 129/379 (34%), Gaps = 44/379 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QAV 325
           T  Q+ AI               +     G+GKT    + +   +            +A+
Sbjct: 25  TPVQQQAIPAA------GRGKDILANAQTGTGKTAAFALPILQQIADTPKDIHSGSVRAL 78

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  + IK Y+Q  ++ V  + G +    + K L++       +++ T   
Sbjct: 79  ILVPTRELAAQVTDNIKAYSQFMELNVVSVYGGVKMETQTKQLKQ----GVDVLVATPGR 134

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT- 434
             + +Q           L+L   D     G     R  L   +     +L +AT   +  
Sbjct: 135 LLEHLQLNHTNLANVEHLVLDEADRMLDMGFITDIRKILESISNDFQTMLFSATLSQQMK 194

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L    L    I   +++ +    IK VI P+ +  +  + L   L   K    +   + 
Sbjct: 195 HLANELLTSPVIVSASKENSTASTIKHVIHPVEQRRK--QELLSELIGTKNWKQVLVFVN 252

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
            K+ +N      + + +         + HG      +   +  FK G  + L+AT V   
Sbjct: 253 TKEAANNIVKELKLDGI------KADVCHGDKGQGARRRALTEFKEGKIRALVATDVAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK-----NSYTRL 608
           G+DV     ++  +        +H++ GR GR  E  + +               +    
Sbjct: 307 GLDVQGLKYVVNYDLPFLAEDYIHRI-GRTGRAGETGNAVSFVCREEEHGLADIEAMIGY 365

Query: 609 SVLKNTEDGFLIAEEDLKQ 627
            + +    G+ ++  D   
Sbjct: 366 KIEREVVKGYEVSNRDRLI 384


>gi|37748194|gb|AAH59237.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
          Length = 851

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 143/423 (33%), Gaps = 72/423 (17%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------GQAV 325
             Q      +            I Q   G+GKT    I +   ++ G          Q +
Sbjct: 283 PIQAKTFHHVYSGKD------LIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVL 336

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  +     T+  ++ V    G  P   +   +ER+  G   I++GT   
Sbjct: 337 VLAPTRELANQVSKDFSDITK--KLSVACFYGGTPYGGQ---IERMRSG-IDILVGTPGR 390

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +D +Q  KL        +L  VD+    G   +++              +   P+TL+ 
Sbjct: 391 IKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKD----SEDNPQTLLF 446

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEK 495
           ++     +  + +K       +  +I        I  E L +     ++A  I   I   
Sbjct: 447 SATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVY 506

Query: 496 KESNFR-----SVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                R        +    L ++         +HG +    +E  +  F+NG   +L+AT
Sbjct: 507 SGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVAT 566

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +  +++         + +H+  GR GR      CI  Y            
Sbjct: 567 NVAARGLDIPEVDLVVQSCPPKDVESYIHR-SGRTGRAGRTGVCICFY------------ 613

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
                 ++ + +A+             ++Q    KF          +++ + KDA  +L 
Sbjct: 614 ----QNKEEYQLAQ-------------VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLD 656

Query: 669 QDP 671
             P
Sbjct: 657 SVP 659


>gi|225024978|ref|ZP_03714170.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC
           23834]
 gi|224942208|gb|EEG23417.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC
           23834]
          Length = 431

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 123/344 (35%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
            PT  Q  A+   +           +     GSGKT   L+     +         G + 
Sbjct: 25  EPTPIQVQALPAAIDGRD------IMASAQTGSGKTAAFLLPSLQRITRRSDKSGKGPRI 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  +  K Y QN   +    + G      + KAL +       +++ T 
Sbjct: 79  LVLTPTRELAAQVEKNAKIYAQNMKWLRTVTLVGGSSFGFQIKALAKP----IDLVVATP 134

Query: 384 ALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVL 437
               D      I + +L ++++DE  R      +   +        ++ ATP   +TL+ 
Sbjct: 135 GRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIET-------IVAATPESRQTLLF 187

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  D  + K+  +   + P    I   +   ++ E+L     +  K   +   + +   
Sbjct: 188 SATWDGAVGKLARR-LTKNPEVIEIEREDNQGKIDEQLFYCDDKNHKNRLLDHILRDANI 246

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +++ E+          +   +HG M    +   +   + G  K+L+AT V 
Sbjct: 247 DQCIIFTSTKAMSEQLADELYEKGFAANCLHGDMPQNWRNRTLMDLRKGRIKVLVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
             GIDV   + +I  +        +H++ GR GR       +  
Sbjct: 307 ARGIDVPSITHVINYDLPKQAEDYVHRI-GRTGRAGRHGLALTF 349


>gi|189465693|ref|ZP_03014478.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM
           17393]
 gi|189433957|gb|EDV02942.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM
           17393]
          Length = 428

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 124/357 (34%), Gaps = 33/357 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE +I  IL+          I     G+GKT   L+ +   +  G         ++M
Sbjct: 25  TPIQEKSIPVILEGRD------LIAVAQTGTGKTAAYLLPVLNKLSEGNHPEDAINCIVM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ ++    +    + G        +  + +  G A ++I T     
Sbjct: 79  SPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKKGLMLG-ADVVIATPGRLI 137

Query: 388 DS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                  +   ++   I+DE  R           +               +T++ ++   
Sbjct: 138 AHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKY------LPKERQTIMFSATMP 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
             I ++            V + ++R  E I +   V  E +K   I     E+       
Sbjct: 192 AKIQQLANTILNNPAE--VKLAVSRPAEKIVQAAYVCYENQKLGIIRSLFAEQTPERVII 249

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +    ++  +H  +    +E VM  FK G   +L+AT ++  GID
Sbjct: 250 FASSKLKVKEVTKALKMMKLNVGEMHSDLEQAQREEVMHEFKAGRVNILVATDIVARGID 309

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + D  ++I  +  H     +H++ GR  R       +   +     N     + L+ 
Sbjct: 310 IDDIRLVINYDVPHDSEDYVHRI-GRTARANNDGVALTFINEKEQSNFKQIENFLEK 365


>gi|159469622|ref|XP_001692962.1| DEAD box RNA helicase [Chlamydomonas reinhardtii]
 gi|158277764|gb|EDP03531.1| DEAD box RNA helicase [Chlamydomonas reinhardtii]
          Length = 407

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 131/369 (35%), Gaps = 44/369 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------G 321
           +P+  Q      IL           I     GSGKTL   + M   + A          G
Sbjct: 10  APSPIQAQCWPIILAGRD------LIGIAATGSGKTLGFGLPMLRHIAAQREAGVVTGKG 63

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             AV+MAP   LA Q  E +++      +    + G +P+  + +AL         +++G
Sbjct: 64  PFAVVMAPTRELALQINEVLEEAGSKCGVRTVCVYGGVPKHPQIQALRS----GVEVVVG 119

Query: 382 THALFQDSIQYYKLILVIV-----DEQHRF-----GVQQRLKLTQKATAPHVLLMTATPI 431
           T    +D +    L L  +     DE  R          R  +         L+ +AT  
Sbjct: 120 TPGRMEDLLNDGALKLNQITYAVLDEADRMLDLGFEPHIRAIMNLTRADRQTLMFSATWP 179

Query: 432 P--RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLKVVLSEGKKA 485
              + L +  L       I  +        T    VI P  R   +++ L+       + 
Sbjct: 180 TAVQKLAVAFLSHPVKVTIGSQDLAASHSITQHVEVIEPHARDGRLLDLLQQYHGAKGRK 239

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             +   +  KKE+       R   L          IHG +S   +   ++ FK+G   LL
Sbjct: 240 NRVIIFVLYKKEA------PRVEQLLTRKGWKAGAIHGDISQQQRTDAVEKFKSGAVPLL 293

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-PLSKNS 604
           IAT V   G+D+ D  ++I  +        +H++ GR GR  +       +   P    +
Sbjct: 294 IATDVAARGLDIPDVEVVINYSFPLTTEDYVHRI-GRTGRAGKTGVAYTFFCAGPDKPRA 352

Query: 605 YTRLSVLKN 613
              ++VL+ 
Sbjct: 353 GELINVLRE 361


>gi|170725457|ref|YP_001759483.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810804|gb|ACA85388.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 432

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/380 (17%), Positives = 134/380 (35%), Gaps = 44/380 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAV 325
           T  Q+ AI  I +          +     G+GKT    + +   +         +  +A+
Sbjct: 25  TPVQQQAIPAIRRGQDV------LASAQTGTGKTAAFALPILQKMIDKPSETQRSNTRAL 78

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  + I  Y+++ Q+ V  I G +    + + ++R       II+ T   
Sbjct: 79  ILTPTRELASQIADNINDYSKHMQVSVLTIYGGVKLETQAQKIKR----GVDIIVATPGR 134

Query: 386 FQDSIQYYKLILVIVD--------EQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--R 433
             + IQ   L L  VD             G     +  L         +L +AT     +
Sbjct: 135 LLEHIQACNLNLSNVDFMVLDEADRMLDMGFVSDIQKVLQAVNKNSQKMLFSATFSSSVK 194

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L    L    +  + ++      +  V+ P+ +  +     +++  +  K   I     
Sbjct: 195 KLANDFLDKPKLISVDKQNTTADTVSQVVYPVEQRRKRELVSELIGKKNWKQVLIFT--- 251

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R   ++            +++HG  +  ++   +  FK G  ++L+AT V   
Sbjct: 252 -----ATRDAADKLVKELNLDGIPSSVVHGEKAQGNRRRALREFKEGKVRVLVATEVAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL-- 611
           G+D+ D   ++  +        +H++ GR GR  +    I L      +       ++  
Sbjct: 307 GLDIQDLEYVVNYDLPFLAEDYVHRI-GRTGRAGKSGVAISLVSREEERTLADIEKLIGK 365

Query: 612 ---KNTEDGFLIAEEDLKQR 628
              + T  G+ +   DL  +
Sbjct: 366 KLPRITIAGYEVGSRDLLIK 385


>gi|46447193|ref|YP_008558.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400834|emb|CAF24283.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 515

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/340 (18%), Positives = 127/340 (37%), Gaps = 37/340 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAPIG 331
           +  Q+ AI  +L           + Q   G+GKT    +     +    G Q +++ P  
Sbjct: 35  SPIQKQAIPVVLAGHDV------VAQAHTGTGKTAAFGLPALHLIHDNPGSQLLVLTPTR 88

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
            LA Q  + + +  ++  I    I G      + +AL+R       +I+ T    QD ++
Sbjct: 89  ELASQVSDELFRLGRHLGIRTATICGGKSFRPQIEALQR----GVQVIVATPGRLQDLLE 144

Query: 392 YYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
              L        +L   DE    G  + ++                   +TL+ ++    
Sbjct: 145 SDSLPDFRPAIVVLDEADEMLDMGFLEAIQRIFTFLPAK---------RQTLLFSATMPS 195

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------ 497
            I K+  +   +KPI   +      ++ I+++  V+ E ++   I   ++ ++       
Sbjct: 196 AIQKLAHQ-ILKKPIFISVTQKETTNKDIKQVYYVIREDERDDAILRLLDSEEPAKSIIF 254

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +  V+R ++           +HG M    +E V+  F++   ++L+AT V   G+ V
Sbjct: 255 CRTKKDVDRLSTTLVANGYHARGLHGDMEQPQREEVIRHFRSEQIRVLVATDVAARGLSV 314

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            D S +   +      + +H++ GR GR            
Sbjct: 315 SDVSHVFNYHLPFDPASYVHRI-GRTGRAGNKGVASTFVT 353


>gi|289676388|ref|ZP_06497278.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae FF5]
          Length = 435

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|288942044|ref|YP_003444284.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288897416|gb|ADC63252.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 454

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/366 (20%), Positives = 133/366 (36%), Gaps = 45/366 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------EAGGQAV 325
           +PT  Q   I   +        +  ++    GSGKT   L+ +          +   +A+
Sbjct: 25  TPTPVQAQVIPLAMDG------VDLLVSAATGSGKTAAFLLPIMQRFIDVPRHDGSTRAL 78

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA+Q +    +    T++   +ITG   +AH+   L +       I++ T   
Sbjct: 79  ILVPTRELARQIHIHFMRLGSYTRLTSGVITGGESKAHQIATLRK----NPEILVATPGR 134

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTL 435
             + ++  +        L+L   D     G    +   +         LL +AT   R L
Sbjct: 135 LLEFLETGQANLRDLEFLVLDEADRMLDMGFADDVLAIIRYSRPERQSLLFSATLEQRGL 194

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQ 491
                     S+ITE+   R P +  + P+ +    I    ++      + ++  W+   
Sbjct: 195 ----------SQITER-LLRDPQRVDVDPVRQQHPDIAHCMLLSDGLEHKQQQLLWLLRH 243

Query: 492 IEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +K   F +  E   +L          +A++HG +   ++  VM    +G    LIAT
Sbjct: 244 ETYEKALIFTNTREGAVALGNFLQGQQQRVAVLHGELDQRERNRVMGLLHSGRVNTLIAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            +   GIDV     +   +    G   LH+  GR GR  E    I L  PP      +  
Sbjct: 304 DLAARGIDVPGVQRVFNFDLPRRGDDYLHR-TGRTGRAGEAGVAISLVGPPEWNRMESIA 362

Query: 609 SVLKNT 614
             L  T
Sbjct: 363 RYLNLT 368


>gi|117919611|ref|YP_868803.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117611943|gb|ABK47397.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 409

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/356 (18%), Positives = 129/356 (36%), Gaps = 41/356 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----- 319
           L  + +  PT  Q  AI  IL       +   +     G+GKT    + +   +      
Sbjct: 16  LAELGYQQPTPIQIEAIPAILA------KQDVMAGAQTGTGKTAAFALPILQQLLIDNES 69

Query: 320 ----AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+++ P   LA Q  +   KY + T I V I  G +    ++   +      
Sbjct: 70  QDAPKDVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAEFKA----G 125

Query: 376 AHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLL 425
             ++I T     D ++       +L +++ DE  R        + +  L Q       LL
Sbjct: 126 IDVLIATPGRLLDHLRQGALNLKRLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQRQTLL 185

Query: 426 MTATPIPRTLVLT--SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT        +   L D  + ++ ++      ++  +  I+   +      +V S+  
Sbjct: 186 FSATLDDSIFGFSKNLLRDPKLIEVAKRNTTAAQVEQRVYAIDSDRKTEFVSHLVRSKNW 245

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +   I  +         +  V++  +       +    HG +S   +E V+  FK G  +
Sbjct: 246 QQVLIFSRT--------KQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQ 297

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +L+AT V   G+D+ D   +I           +H++ GR GR       I L+   
Sbjct: 298 VLVATDVAARGLDIADLQYVINFELPFIAEDYIHRI-GRTGRAGSAGLAITLFSQE 352


>gi|330929272|ref|XP_003302577.1| hypothetical protein PTT_14452 [Pyrenophora teres f. teres 0-1]
 gi|311321983|gb|EFQ89342.1| hypothetical protein PTT_14452 [Pyrenophora teres f. teres 0-1]
          Length = 599

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/391 (17%), Positives = 140/391 (35%), Gaps = 57/391 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGG--------- 322
           PT  Q+ +I  +   M  ++ M        GSGKT   L  +   A + G          
Sbjct: 219 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILAQAFQNGPSPPPQQAQG 272

Query: 323 ----------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                      ++++AP   L  Q ++  +K+   + +   ++ G      + + +ER  
Sbjct: 273 GYGRQRKAYPTSLVLAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIER-- 330

Query: 373 HGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
                +++ T     D I+  +        L+L   D     G + +++   +       
Sbjct: 331 --GCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRIVEGED---- 384

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            M  T   +TL+ ++    DI  +  +   +  I   +  +    E I +    + +  K
Sbjct: 385 -MPPTAGRQTLMFSATFPRDIQMLA-RDFLKDYIFLSVGRVGSTSENITQKIEYVEDVDK 442

Query: 485 AYWICPQIEEKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
              +   +     +N        + + +  +    +       IHG  +  ++E  ++ F
Sbjct: 443 RSVLLDILHTHDPTNLTLVFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMF 502

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +NG C +L+AT V   G+D+     ++  +        +H++ GR GR          ++
Sbjct: 503 RNGRCPILVATAVAARGLDIPHVKHVVNYDLPTDIDDYVHRI-GRTGRAGNTGIATAFFN 561

Query: 598 PPLSKNSYTRLSVLKNTED---GFL--IAEE 623
                     L +LK       GFL  IA E
Sbjct: 562 RGNRGVVRDLLELLKEANQEVPGFLESIARE 592


>gi|167549858|ref|ZP_02343616.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205325031|gb|EDZ12870.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 457

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 137/358 (38%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVTLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGVQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKETVSLDAL-HILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   ++PI+  I  ++ +   IE+     S  +K   +   + + +    
Sbjct: 187 WPEAIAAISGR-VQQQPIRIEIDTVDALP-AIEQQFFETSAHEKISLLQTLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNYELAWDPEVHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQ 361


>gi|157962445|ref|YP_001502479.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847445|gb|ABV87944.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 448

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 135/381 (35%), Gaps = 39/381 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             ++ ++ Q +      +PT+ QE AI   L           +     GSGKTL  L+  
Sbjct: 6   FALDQRLLQSLKHMGIDTPTEIQEQAIPVALAGKD------LMASSKTGSGKTLAFLLPA 59

Query: 315 AAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              +       +   + VI+ P   LA Q Y  ++    NTQ     I G      + KA
Sbjct: 60  MQRLISCKALSKRDPRVVILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKA 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKAT 419
           L R      H ++ T     D ++ + L        IL   D     G  ++LK+   A 
Sbjct: 120 LSR----DPHFVVATPGRLADHLKQHHLHLNGLELLILDEADRMLDLGFAEQLKMINAAA 175

Query: 420 AP---HVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  L+ +AT        +    L   +   I       K I   I   + +D    
Sbjct: 176 DHKRRQTLMFSATLDHGDVNDIANELLKFPEHVAIGAGNLEHKDITQRIFLCDHLDHKEA 235

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L  +L E ++   I            R   +R  +         A + G +    +  +
Sbjct: 236 ILTRILKEEQQKQIIIFT-------ATRQDTDRLATKLAAEGFKTASLSGELKQNARNQI 288

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           MD F  G  ++L+ T V   G+D+++ S++I  +   F    +H++ GR GR       I
Sbjct: 289 MDEFSRGLQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDAI 347

Query: 594 LLYHPPLSKNSYTRLSVLKNT 614
            L  P    N     + L  T
Sbjct: 348 SLVGPKDWINFTQVQTFLNKT 368


>gi|172061636|ref|YP_001809288.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171994153|gb|ACB65072.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 479

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 123/357 (34%), Gaps = 29/357 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           SPT  Q+ AI  +L           +     G+GKT    + +   +             
Sbjct: 23  SPTPIQQQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHTYYAEHRGAKRA 76

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R       I++ 
Sbjct: 77  VRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----GVDIVVA 132

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +Q   + L  +D         R+           +L    P  + L+ ++  
Sbjct: 133 TPGRLLDHMQQKTIDLSNLD-ILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATF 191

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-- 499
             +I  + +      P    +   N   E + +    +   +K   +   I E       
Sbjct: 192 SDEIKSLADSLLD-SPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVL 250

Query: 500 ----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +    R          S   IHG  S   +   +  FK+ T ++L+AT +   GI
Sbjct: 251 VFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLVATDIAARGI 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           D+     ++  +  +     +H++ GR GR       + L      +       ++K
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLVCVDEKQLLRDIERLIK 366


>gi|329123747|ref|ZP_08252307.1| ATP-dependent RNA helicase DeaD [Haemophilus aegyptius ATCC 11116]
 gi|327469946|gb|EGF15411.1| ATP-dependent RNA helicase DeaD [Haemophilus aegyptius ATCC 11116]
          Length = 613

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 132/364 (36%), Gaps = 36/364 (9%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+S I  +L           +     GSGKT    + + A +   E   
Sbjct: 21  SDLGFETPSPIQQSCIPHLLSG------NDVLGMAQTGSGKTAAFALPLLAQIDPSEKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  + + +      +  + G      R     R     A +++G
Sbjct: 75  QMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGG----QRYDIQLRALKQGAQVVVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 131 TPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMP 190

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I      ++ + +    L+ +  E   A  I 
Sbjct: 191 EPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +NG+  +++AT 
Sbjct: 251 ARTKTGTLD--------ITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S+++  +      + +H++ GR GR       +L   P   +       
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEH 361

Query: 610 VLKN 613
           ++K 
Sbjct: 362 LMKK 365


>gi|320589197|gb|EFX01659.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
          Length = 734

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 132/392 (33%), Gaps = 65/392 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-----------A 320
            PT  Q +AI   LQ          I     GSGKT   L+ +   ++            
Sbjct: 325 EPTPIQRAAIPIALQGRD------LIGVAVTGSGKTAAFLLPLLVYIKELPPLDEISKND 378

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+I+AP   LAQQ     +K+       V  I G      +  AL       A I++
Sbjct: 379 GPYALILAPTRELAQQIESEARKFATPFGYTVVSIVGGHSLEEQAYALRN----GAEIVV 434

Query: 381 GTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLT----------------Q 416
            T     D I+   L+L           D     G +  L                   +
Sbjct: 435 ATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEDPLNKILDAMPTANEKPDTDEAE 494

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-------------II 463
            A A    L        T++ T+     + KI ++   R  I T+             + 
Sbjct: 495 DARAMTQYLGGKIRYRETMMYTATMPPVVEKIAKRYLRRPAIVTIGNVGEAVETVEQRVE 554

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
            ++  D   +RL+ +L  G+ A  I   +      N +   E           +   +HG
Sbjct: 555 FVSGEDRRKKRLQEILQSGQFAAPIIVFV------NIKRNCEMVAKDVRQMGFTTVTLHG 608

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
             +   +E+ + + + G   +L+AT +   GIDV D S++I  N         H++ GR 
Sbjct: 609 SKTQDQREAALQALRQGKADVLVATDLAGRGIDVADVSLVINFNMATSVEQYTHRI-GRT 667

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           GR  +    I       S   Y    ++  + 
Sbjct: 668 GRAGKSGVAITFLGGEDSDVLYDLKQMISKSS 699


>gi|283785363|ref|YP_003365228.1| ATP-independent RNA helicase [Citrobacter rodentium ICC168]
 gi|282948817|emb|CBG88418.1| ATP-independent RNA helicase [Citrobacter rodentium ICC168]
          Length = 457

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/453 (16%), Positives = 171/453 (37%), Gaps = 48/453 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           LR + + S T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LRELGYLSMTPVQAAALPAILAGQDVR------VQAKTGSGKTAAFGLGLLQHIDAALFK 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  ++     +  + G  P   +R +L+       HII+
Sbjct: 72  TQSLVLCPTRELADQVAGELRRLARSMPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLEGLT-TLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I  ++ +  + ++     ++GK           +     
Sbjct: 187 WPEAIAAISAR-VQRDPVTIEIDAVDALPAIEQQFFETSTQGKIPRLQTLLSLHQPASCV 245

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +   +           S   +HG +   +++  +  F NG+ ++L+AT V   G+
Sbjct: 246 VFCNTKKDCQAVCDALNASGQSALALHGDLEQRERDMTLVRFANGSARVLVATDVAARGL 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+    +++           +H++ GR  R       I    P  ++ +     +L+ T 
Sbjct: 306 DIKALELVVNFELAWDPEVHVHRI-GRTARAGNRGLAISFCAPAEAQRANILAEMLQLTL 364

Query: 616 DGFLIAEEDLKQR-------------------KEGEILG--IKQSGMPKFLIAQPELHDS 654
           +    A  ++  +                   + G++LG      G+    I +  +H +
Sbjct: 365 NW-CDAPTNMAIKPLEAEMMTLCIDGGKKAKMRPGDVLGALTGDMGLDGADIGKITVHPA 423

Query: 655 --LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
              + + +  A H   Q  +   ++G++ R+ L
Sbjct: 424 HVYVAVRQSVAHHAWKQLQN-GKIKGKACRVRL 455


>gi|224052119|ref|XP_002191015.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Taeniopygia guttata]
          Length = 589

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 148/424 (34%), Gaps = 74/424 (17%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---------GGQAV 325
             Q    + I            I Q   G+GKT    + +   +++           + +
Sbjct: 47  PVQVKTFQPIYDGKDV------IAQARTGTGKTFSFALPLIEKLQSVTQDGRRGRAPKVL 100

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  +  K  T+  ++ V    G  P   +   L+        I++GT   
Sbjct: 101 VLVPTRELATQVAKDFKNLTK--KLSVACFYGGSPYKEQLDLLKS----GIDILVGTPGR 154

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            QD IQ  KL        +L  VD     G  ++++    ++        +   P+TL+ 
Sbjct: 155 IQDHIQNSKLELSSVKHVVLDEVDHMLDMGFAEQVEEILGSSYKRG----SENNPQTLLF 210

Query: 438 TSLGDIDISKITEKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE-- 493
           ++     +  + +K    +  +  +I     R    +E L +     ++A  +   I+  
Sbjct: 211 SATCPRWVYDVAKKYMRDEYEQIDLIGKKAQRTATTVEHLAIQCRSSQRAGVLGDIIQVY 270

Query: 494 ---EKKESNFRSVVERFNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                +   F    +  N L  +         +HG +    +E  +  F+NG  ++LIAT
Sbjct: 271 SGSRGRTIVFCETKKEANELAMNASLKQDAQSLHGDIPQKQREITLKGFRNGVFEVLIAT 330

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +  ++I  +      + +H+  GR GR      CI L+            
Sbjct: 331 NVAARGLDIPEVDLVIQCSPPKDVDSYIHR-SGRTGRAGRTGICICLF------------ 377

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQS-GMPKFLIAQPELHDSLLEIARKDAKHIL 667
                             QR+E ++L   +      F          +++ +  DAK +L
Sbjct: 378 ------------------QRREEDLLKQVEHKAGITFKRVGVPSATDVIKASSSDAKKLL 419

Query: 668 TQDP 671
              P
Sbjct: 420 EAVP 423


>gi|119510101|ref|ZP_01629241.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
 gi|119465288|gb|EAW46185.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
          Length = 500

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 132/351 (37%), Gaps = 38/351 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L NI F+ PT  Q  AI  +L           + Q   G+GKT    + +   ++     
Sbjct: 18  LENIGFTTPTNIQTQAIPQLLAGRDV------VGQSQTGTGKTAAFSLPILEQLDVNHKA 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++AP   LA Q ++ I ++  +  + +  I G      +   L+R      H+++G
Sbjct: 72  VQALVLAPTRELAIQVHDAINQFVGDEGLRILAIYGGQSIERQMMQLKR----GVHMVVG 127

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D +    L L  V        DE    G    +            L  A    +
Sbjct: 128 TPGRMIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKI---------LSQAPKERQ 178

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T + ++     I  I  K        TV  P    +++ +   ++     KA  + P +E
Sbjct: 179 TALFSATMPPSIRMIVNKFLRNPATVTVEQPKASPNKINQVAYLIPRHWTKAKALQPILE 238

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +           R       +L +    S+   HG +S   +E ++  F+N   + ++A
Sbjct: 239 MEDPETALIFVRTRRTAAELTNLLQGAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVA 298

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           T +   G+DV   S +I  +        +H++ GR GR  +  + I L  P
Sbjct: 299 TDIAARGLDVDLLSHVINFDLPDSAETYVHRI-GRTGRAGKEGTAISLVQP 348


>gi|317503390|ref|ZP_07961434.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
 gi|315665485|gb|EFV05108.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
          Length = 542

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/346 (17%), Positives = 120/346 (34%), Gaps = 38/346 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL           +     G+GKT   L+ + + ++ G         +IM
Sbjct: 25  TPVQEKCIPEILNG------NDVLGVAQTGTGKTAAYLLPILSKLDDGNYPEKAINCLIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ +      +  +        +R     +     A ++I T     
Sbjct: 79  SPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQELKSLQLGADVVIATPGRLI 138

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
             I    +        IL   D     G    +    K               +T++ ++
Sbjct: 139 SHISLGNVDLSKVSFFILDEADRMLDMGFSDDILKIAKKLPQSC---------QTIMFSA 189

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
                I ++ +       +    + +++  E I++   V  E +K   I    +      
Sbjct: 190 TMPDKIEELAKTLLKNPKVIK--LAVSKPAEKIKQSAYVCYETQKMGIIKDIFKSDDLKR 247

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +  V++     +    +   +H  +    ++ VM  FK+G   +L+AT ++  
Sbjct: 248 VIIFCGSKMKVKQVAGALQRKHINCGEMHSDLDQAMRDEVMFKFKSGQFDVLVATDIVAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GID+ D S++I  +  H     +H++ GR  R     S I      
Sbjct: 308 GIDIDDISMVINYDVPHDAEDYVHRI-GRTARAAREGSAITFVSDD 352


>gi|241766307|ref|ZP_04764197.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241363561|gb|EER58995.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 448

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 127/348 (36%), Gaps = 42/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L+          +     G+GKT    + M   +  G          
Sbjct: 23  TPTPIQAQAIPAVLEGHD------LLAGAQTGTGKTAAFTLPMLHRLSQGTAPKNKFGGK 76

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   LA Q  E +++Y +   I   ++ G +    +   ++R       I++
Sbjct: 77  GIRALVLTPTRELAAQVEESVREYGKYLDINSTVVFGGVGMNPQIDRIKR----GVDILV 132

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT- 429
            T     D  Q   L L  V     DE  R      +   +K           LL +AT 
Sbjct: 133 ATPGRLLDLQQQGFLDLSTVEVLVLDEADRMLDMGFIHDVKKVLALVPKDKQSLLFSATF 192

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R L  T L +    ++T      + I  VI P+ R  +     +V+L   ++  W 
Sbjct: 193 SDEIRELANTLLKNPQSIQVTPSNTTVQRITQVIHPVGRGKKK----QVLLHIIQQHNWS 248

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +  + +    +V E          +    +HG  S   +   +  FK+G  + L+AT
Sbjct: 249 QVLVFTRTKFGANNVAEFLTKNGVQAMA----LHGNKSQSARTQALAGFKSGEIRALVAT 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            +   GID+ D   ++     +     +H++ GR GR       + L 
Sbjct: 305 DIAARGIDIDDLPHVVNYEIPNVSEDYVHRI-GRTGRAGASGEAVSLV 351


>gi|256073063|ref|XP_002572852.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658018|emb|CAZ29084.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 769

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/363 (20%), Positives = 128/363 (35%), Gaps = 38/363 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q       L        ++ I Q   GSGKT   L+     + A        G   
Sbjct: 115 PTPIQSQGWPMAL----SGRDVVGIAQ--TGSGKTASFLLPAVIHIMAQPRLLRNEGPIC 168

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LAQQ     K++     +      G   +  +   L  +  G   I I T  
Sbjct: 169 LILVPTRELAQQVLVVAKEFADAASLRAMCFYGGSAKGTQ---LREMQKGG-EICIATPG 224

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP-- 432
              D I+  +        L+L   D     G   Q R  +         L+ +AT     
Sbjct: 225 RLIDFIRVQRNLLSRVTYLVLDEADRMLDMGFEPQIRKIIGHTRPDRQTLMWSATWPREV 284

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL    L D     I        P  T I+ I       +RL  +L+   +A  +   +
Sbjct: 285 QTLAREFLTDYIQVNIGSVSLHANPNITQIVEIMDDWSKEQRLIELLTSFGRARTLV-FV 343

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           E K     R   +  NSL       +  +HG     D+E  + +FK+G   +L+AT V  
Sbjct: 344 ETK-----RRTDQLTNSLRRRGFY-VEAMHGGKQQRDRELTLANFKSGRMNILVATDVAS 397

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ +   ++  +  +     +H++ GR  R ++  +    +     + +   + +L 
Sbjct: 398 RGLDIDNIEYVVNFDFPNQTEDYIHRI-GRTARSDKTGTAFTFFTHKNVRQARDLIDILD 456

Query: 613 NTE 615
              
Sbjct: 457 EAN 459


>gi|148977043|ref|ZP_01813689.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145963703|gb|EDK28964.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 428

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 134/362 (37%), Gaps = 39/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
             T  Q+ AI      M++K   +       G+GKT    + +   +   G        +
Sbjct: 23  KLTPIQQKAIP-----MARKGHDIF-ATAQTGTGKTAAFSLPVIQHLLNSGKKASRGTAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA Q  + IK Y + T++ V  + G    + + + LE        I++ T 
Sbjct: 77  GLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQLEL----GVDILVATP 132

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
              ++ ++           L+    D     G     R  +    T+P +++ +AT   +
Sbjct: 133 GRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSPQIMMFSATTSTQ 192

Query: 434 --TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L +  L       +  + +    +  V+ P+++  +     +++  +  +   +   
Sbjct: 193 LNQLSVDILRKPKRISVERENSTAATVGHVVYPVDQERKTELLSELIGRKNWRQVLVFVN 252

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +E       +  E    L      ++ + HG  +   +   +D FK G  ++++AT V 
Sbjct: 253 YKE-------TANEVVKELKLDGIKAV-LCHGDKAQSARRRALDDFKEGKARVMVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D   +I  +        +H++ GR GR  +    +   +            ++
Sbjct: 305 ARGLDIEDLPHVINYDMPFLAEDYVHRI-GRTGRAGKQGHAVSFVNREEELTVVQVEKLI 363

Query: 612 KN 613
           + 
Sbjct: 364 QQ 365


>gi|307129391|ref|YP_003881407.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306526920|gb|ADM96850.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 631

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 152/414 (36%), Gaps = 50/414 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + +  P+  Q   I  +L           +     GSGKT    + +   ++A    
Sbjct: 21  LSEMGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLNNIKADLKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E   +++++   + V  + G      R     R       I++
Sbjct: 75  PQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTALFSATM 190

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + D    +I      R  I      +  + +    ++ + +E   A  I
Sbjct: 191 PEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFLEAEDFDAAII 250

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +LIAT
Sbjct: 251 FVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDILIAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 609 SVLKNTEDGFLIAEEDLK------QRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             +K T     I E DL       QR+  +  G  Q    +   +  +++ +LL
Sbjct: 362 RTMKLT-----IPEVDLPNAELLGQRRLAQFAGKVQ---QQLESSDLDMYRALL 407


>gi|224065635|ref|XP_002301895.1| predicted protein [Populus trichocarpa]
 gi|222843621|gb|EEE81168.1| predicted protein [Populus trichocarpa]
          Length = 1112

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/422 (19%), Positives = 158/422 (37%), Gaps = 54/422 (12%)

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIM 327
            Q  A+  I+           I     GSGKTL  ++ M   ++         G   ++M
Sbjct: 498 IQAQALPIIMSGRD------CIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGEGPIGLVM 551

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   L QQ +  IKK+ +   I    + G    A +   L+R       I++ T     
Sbjct: 552 APTRELVQQIHSDIKKFAKALSIRCVPVYGGSGVAQQISELKRGTE----IVVCTPGRMI 607

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D +           ++  +++DE  R           +            P  +T++ ++
Sbjct: 608 DILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR------PDRQTVLFSA 661

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                +  +  K    KP++  +   + +++ I +L  + +E ++   +   + E  +  
Sbjct: 662 TFPRQVETLARKVLN-KPVEIQVGGRSVVNKDITQLVELRTEDQRWLRLLELLGEWYQKG 720

Query: 499 ---NFRSVVERFNSLHEH---FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F    ++ +SL  +   F      +HG     D+ES +  FK   C L+IAT+V  
Sbjct: 721 KILIFVQSQDKCDSLFRNLLKFGYPCLSLHGAKDQTDRESTISDFKTNVCNLMIATSVAA 780

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV D  ++I  +A +     +H++ GR GR       I       ++ +   +  L+
Sbjct: 781 RGLDVKDLELVINYDAPNHYEDYVHRV-GRTGRAGRKGCAITFISEDDARYAPDLVKALE 839

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQS---------GMPKFLIAQPELHDSLLEIARKDA 663
            +E    +  +DLK   +G +  + Q          G   F     E  +  +   +  A
Sbjct: 840 LSE---QVVPQDLKALADGFMAKVNQGLEQAHGTGYGGSGFKF-NEEEDEKRMAAKKAQA 895

Query: 664 KH 665
           K 
Sbjct: 896 KE 897


>gi|16197947|gb|AAL13744.1| LD21880p [Drosophila melanogaster]
          Length = 680

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/340 (20%), Positives = 138/340 (40%), Gaps = 35/340 (10%)

Query: 295 LRILQGDVGSGKTLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQ 346
             I     GSGKTL  ++ M   +          G  A+IMAP   L  Q  + I+K+++
Sbjct: 5   DLIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSK 64

Query: 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILV 398
           +  +    + G    + +   L+R     A II+ T     D +           ++  V
Sbjct: 65  SLGLRPVCVYGGTGISEQIAELKR----GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYV 120

Query: 399 IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPI 458
           ++DE  R                  ++    P  +T++ ++     +  +  +   +KPI
Sbjct: 121 VLDEADRMFDMGFEPQVM------RIIDNVRPDRQTVMFSATFPRQMEALARR-ILKKPI 173

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----SNFRSVVERFNSLHEHF 514
           + ++   + + + +E+  V+L++  K + +   +   +E      F    E  + L    
Sbjct: 174 EVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDL 233

Query: 515 TSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
             +      +HG +   D++S +  FK+G  +LLIAT+V   G+DV D  +++  +  + 
Sbjct: 234 MKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNH 293

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
               +H+  GR GR  +  S      P  S+ +   +  +
Sbjct: 294 YEDYVHR-CGRTGRAGKKGSAYTFITPEQSRYAGDIIRAM 332


>gi|59713557|ref|YP_206332.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481805|gb|AAW87444.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 434

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 131/367 (35%), Gaps = 34/367 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
             + F   T  QE AI  +LQ          +     G+GKT    + +   +       
Sbjct: 33  AELGFKEATPIQEQAIPLVLQGHDV------LAGAQTGTGKTAAFGLPLIQRLIESPIER 86

Query: 323 -------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +++I+ P   LAQQ ++ +  YTQNT++ V +  G      +++ L     G 
Sbjct: 87  HEESKVVRSLILTPTRELAQQVFDSLVSYTQNTELKVVVAYGGTSINVQKENLL----GG 142

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           A I+I T     D +    + L    E        R+           +L       +TL
Sbjct: 143 ADILIATPGRLLDHLHIKTITLNQA-EYLVLDEADRMLDMGFIPDIKKILRKMPDERQTL 201

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             ++     + +I       KP +  + P N   E +E++   + + +K+  +   I  +
Sbjct: 202 FFSATFSKKVREIAY-YMLNKPKEVQVTPTNSTAETVEQMVYPVDKHRKSELLAYLIGSR 260

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +   +      +      A I+G  S   +   ++ FK G  + LIAT 
Sbjct: 261 NWQQVLVFTKTKQGSDELVKELKKDGIKAASINGDKSQGARLRALEEFKTGKVRALIATD 320

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I           +H++ GR GR       I L    +S +    L 
Sbjct: 321 VAARGLDIEQLECVINYELPFKAEDYVHRI-GRTGRAGHTGKAISL----MSMDEEYLLK 375

Query: 610 VLKNTED 616
            ++   D
Sbjct: 376 AIETLLD 382


>gi|297678503|ref|XP_002817109.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Pongo
           abelii]
          Length = 648

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 126/365 (34%), Gaps = 39/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  A   +LQ +        I     G+GKTL  L+     ++            
Sbjct: 264 KPTPIQSQAWPIVLQGID------LIGVAQTGTGKTLCYLMPGFIHLDLQPSLKGQRNRP 317

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++ P   LA Q      KY+    +    + G   +  + + L +       III T
Sbjct: 318 GMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIEELRK----GVDIIIAT 372

Query: 383 HALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      +    +  +++DE  +           K      +L+   P  +T++ 
Sbjct: 373 PGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMK------ILLDVRPDRQTVMT 426

Query: 438 TSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           ++     + ++ +       I  V    ++ ++ + + I              ++     
Sbjct: 427 SATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQNMSS 486

Query: 494 EKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             K   F S     + L         SI  +HG     D+E  +++FK G  ++LIAT +
Sbjct: 487 TDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVRILIATDL 546

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D + +   +        +H++ GR GR       I        + +   +++
Sbjct: 547 ASRGLDVHDVTHVYNFDFPRNIEEYVHRI-GRTGRAGRTGVSITTLTRNDWRVASELITI 605

Query: 611 LKNTE 615
           L+   
Sbjct: 606 LERAN 610


>gi|294852360|ref|ZP_06793033.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026]
 gi|294820949|gb|EFG37948.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026]
          Length = 488

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 142/393 (36%), Gaps = 40/393 (10%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R   D   A  +  + + K+        + + G + + +       P   Q  AI   L
Sbjct: 64  RRFKADRECAVPLKEIGLTKENTGG-FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQL 122

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
           +          +     GSGKT    + +   +            +A+I+AP   LA Q 
Sbjct: 123 EGRD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQI 176

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+  +++  I   ++ G + +  + K +         ++I T     D +       
Sbjct: 177 EQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATPGRLTDLMRDGLVDL 232

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISK 447
            Q   L+L   D     G    +K   KAT       L +AT       L      D  +
Sbjct: 233 SQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVR 292

Query: 448 ITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P G     I  V+ P+   ++      ++     ++  +  + +   ++  R    
Sbjct: 293 VEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGADAVVRH--- 349

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 E     +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV   S ++ 
Sbjct: 350 -----LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +        +H++ GR GR     + I LY P
Sbjct: 405 YDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|283049400|gb|ADB07168.1| DEAD-box RNA helicase-like protein [Prunus persica]
 gi|283049402|gb|ADB07169.1| DEAD-box RNA helicase-like protein [Prunus persica]
          Length = 413

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 127/343 (37%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYAVVQCQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L +T
Sbjct: 172 MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ +  +E L          Y      +   
Sbjct: 232 RKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRD 386


>gi|110641577|ref|YP_669307.1| ATP-dependent RNA helicase DbpA [Escherichia coli 536]
 gi|110343169|gb|ABG69406.1| ATP-independent RNA helicase DbpA [Escherichia coli 536]
          Length = 457

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  ++        + L +        V+   A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICF-APASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|146300157|ref|YP_001194748.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146154575|gb|ABQ05429.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 634

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/363 (21%), Positives = 139/363 (38%), Gaps = 35/363 (9%)

Query: 268 NIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQ 323
           ++ F  P++ QE AI  +L+   +   M+ + Q   G+GKT      +   ++A     Q
Sbjct: 19  DLGFENPSEVQEKAIPLLLE---KDTDMVALAQ--TGTGKTAAFGFPLIQKIDADNRNTQ 73

Query: 324 AVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           A++++P   L  Q    +K Y++    I V  + G      + + ++R     A II+ T
Sbjct: 74  ALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQAREIKR----GAQIIVAT 129

Query: 383 HALFQDSIQYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP 432
               QD I             IL   DE    G  + +   L+      +  L +AT   
Sbjct: 130 PGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDQKNTWLFSATMPQ 189

Query: 433 RTLVLTSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
               +      +  +IT   K +G   +      +N  D   E LK +       + +  
Sbjct: 190 EVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNARDR-YEALKRLADANPDIFSVV- 247

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     R        L E    S A +HG +S   ++ VM SF+    ++L+AT V
Sbjct: 248 -----FCRTKRDTQAVAEKLIEDGY-SAAALHGDLSQAQRDGVMKSFRGRQIQMLVATDV 301

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GIDV + + ++            H+  GR GR  ++ + I++      +   +   +
Sbjct: 302 AARGIDVDNVTHVVNYQLPDEIETYNHR-SGRTGRAGKLGTSIVIVTKSELRKISSIERI 360

Query: 611 LKN 613
           +K 
Sbjct: 361 IKQ 363


>gi|67527984|ref|XP_661837.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
 gi|74681080|sp|Q5B5E7|RRP3_EMENI RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|40740142|gb|EAA59332.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
 gi|259481158|tpe|CBF74430.1| TPA: ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B5E7] [Aspergillus
           nidulans FGSC A4]
          Length = 465

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 118/341 (34%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAV---IMA 328
           +PT  Q  AI   L+          I   + GSGKT    + M  A+    Q +   ++A
Sbjct: 68  APTPIQSQAIPLALEGRDV------IGLAETGSGKTAAFALPMLQALMEAPQTLFGLVLA 121

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  +  +       +   +I G M    +  AL +    + HII+ T     D
Sbjct: 122 PTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGK----KPHIIVATPGRLLD 177

Query: 389 SIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            ++         L  + +DE        RL       +   ++        T + ++   
Sbjct: 178 HLENTKGFSLRNLKYLAIDEAD------RLLDMDFGESLDKIIRILPRTRHTYLFSATMS 231

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---- 498
             +  + ++ +   P++  +    +    ++   + +    K  ++   + E        
Sbjct: 232 TKVESL-QRASLSNPVRVSVSSKYQTVSTLQSSYICIPHKHKNLYLVYLLNEFAGQSAII 290

Query: 499 --NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                   +R   +          +HG++S   +   +  F++ +  +L+AT V   G+D
Sbjct: 291 FTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLD 350

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +    ++   +        +H++ GR  R  +    I    
Sbjct: 351 IPSVDVVFNFDLPMDSKTYIHRV-GRTARAGKSGVAISFVT 390


>gi|323203477|gb|EFZ88501.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
          Length = 380

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 134/352 (38%), Gaps = 24/352 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIM 327
              T  Q +A+  IL     +      +Q   GSGKT    + +   ++      QA+++
Sbjct: 24  LEMTPVQAAALPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVTLFQTQALVL 77

Query: 328 APIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P   LA Q    +++  +      +  + G  P   +R +L+       HII+ T    
Sbjct: 78  CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIVATPGRL 133

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            D +Q   + L  +          R+     + A   ++  A    +TL+ ++     I+
Sbjct: 134 LDHLQKETVSLDAL-HILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSATWPDAIA 192

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNF 500
            I+ +   ++PI+  I  ++ +   IE+     S  +K   +   + + +        N 
Sbjct: 193 AISGR-VQQQPIRIEIDTVDALP-AIEQQFFETSVHEKISLLQTLLSQHQPASCVVFCNT 250

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G+D+   
Sbjct: 251 KKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSL 310

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 311 ELVVNYELAWDPEVHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQ 361


>gi|321399692|emb|CAJ06994.2| putative ATP-dependent DEAD/H RNA helicase [Leishmania major strain
           Friedlin]
          Length = 592

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 130/377 (34%), Gaps = 41/377 (10%)

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            +      +       PT  Q  +   +L      N    +     GSGKT+  +I  A 
Sbjct: 153 PDAIHQAFMDAGFQ-KPTPIQSVSWPVLL------NSRDIVGVAKTGSGKTMAFMIPAAL 205

Query: 317 AVEA--------GGQAVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            + A        G  A+++AP   LA Q   E  K  T+   I+   + G  P+  +++A
Sbjct: 206 HIMAQPPLQPGDGPIALVLAPTRELAVQIETETRKALTRVPSIMTTCVYGGTPKGPQQRA 265

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QK 417
           L        H+ I T     D ++           L L   D     G + +++    Q 
Sbjct: 266 LRA----GVHVCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQI 321

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKI---TEKPAGRKPIKTVIIPINRIDEVIER 474
            T    L+ +AT       L +    D  ++   +E+      +   +  +    +  E 
Sbjct: 322 RTDRQTLMFSATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHK--EE 379

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
               +        +   ++ KK  +        + L      ++  IHG      ++ V+
Sbjct: 380 KMEEILRQVGPQRVLVFVKTKKSCDILQ-----DRLGRALRQTVLAIHGDKLQSSRDYVL 434

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           D F+     +L+AT V   G+D+ D  +++  +        +H++ GR GR  +      
Sbjct: 435 DRFRKDERAILVATDVAARGLDIKDLDVVVNYDMPLNIEDYVHRI-GRTGRAGKTGDAYS 493

Query: 595 LYHPPLSKNSYTRLSVL 611
                 +  +   L  L
Sbjct: 494 FVSSADNSKTIRDLIDL 510


>gi|28868793|ref|NP_791412.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213969602|ref|ZP_03397738.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           T1]
 gi|28852032|gb|AAO55107.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925698|gb|EEB59257.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           T1]
          Length = 453

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 139/365 (38%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA------AAVEAGGQAV 325
            PT  Q +AI   LQ    +      +    GSGKT   ++ +       A V    +AV
Sbjct: 30  EPTPVQAAAIPLALQGRDLR------VTAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAV 83

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + +++++Q T +   +ITG      +   L ++      I+IGT   
Sbjct: 84  ILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV----PDILIGTPGR 139

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPI---P 432
             + +    L L  V        D     G  + ++    + A     +L +AT      
Sbjct: 140 LLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGL 199

Query: 433 RTLVLTSLGDIDISKI---TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           R ++   L D    ++   +E  +G +            ++V+    ++ +E  +   I 
Sbjct: 200 REMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNW--LLANETYQKAIIF 257

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +++ +R             ++HG     D+++ +D  K G  K+++AT 
Sbjct: 258 T--------NTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATD 309

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV    ++I  +    G   +H++ GR GR       I L          +   
Sbjct: 310 VAARGLDVEGLDMVINFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICHGDWNLMSSVER 368

Query: 610 VLKNT 614
            LK +
Sbjct: 369 YLKQS 373


>gi|322696164|gb|EFY87960.1| ATP-dependent RNA helicase DED1 [Metarhizium acridum CQMa 102]
          Length = 666

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/374 (16%), Positives = 133/374 (35%), Gaps = 45/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------------- 318
           PT  Q+ +I  +   M  ++ M        GSGKT   L  + +                
Sbjct: 205 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQAFINGPSPVPANAAG 258

Query: 319 ------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                 +A   ++I+AP   L  Q Y+  +K+   + +   ++ G      + + +ER  
Sbjct: 259 QFGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIER-- 316

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMT 427
                +++ T     D I+  ++ L  +     DE  R          ++      +   
Sbjct: 317 --GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPV 374

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           A    +TL+ ++    DI  +  +   +  +   +  +    E I +    + +  K   
Sbjct: 375 A--DRQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEFVEDIDKRSV 431

Query: 488 ICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +   +              + + +  +    + +     IHG  +  ++E  ++ F+NG 
Sbjct: 432 LLDILHTHAGGLTLIFVETKRMADSLSDFLINQSFPATSIHGDRTQRERERALEFFRNGR 491

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           C +L+AT V   G+D+ + + +I  +        +H++ GR GR          ++    
Sbjct: 492 CPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRI-GRTGRAGNTGIATAFFNRGNR 550

Query: 602 KNSYTRLSVLKNTE 615
                 + +LK   
Sbjct: 551 GIVRELMELLKEAN 564


>gi|307178385|gb|EFN67130.1| Probable ATP-dependent RNA helicase DDX47 [Camponotus floridanus]
          Length = 435

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/341 (20%), Positives = 132/341 (38%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMA 328
            PTK Q  AI  +L+          I   + GSGKT    + +  A+    Q   A+I+ 
Sbjct: 24  EPTKIQREAIPLVLEGKDV------IGLAETGSGKTAAFALPILQALLENPQRYFALILT 77

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E  +    +  +   +I G M    +   LE+    + HIII T     D
Sbjct: 78  PTRELAFQISEQFEALGSSIGVKCAVIVGGMDMHAQGLLLEK----KPHIIIATPGRLVD 133

Query: 389 SIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            ++        ++  +I+DE        R+         + +L       RTL+ ++   
Sbjct: 134 HLENTKGFNLRQIKFLIMDEAD------RILNMDFEVEVNKILRVMPRERRTLLFSATMT 187

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
             + K+ ++ + R P+K  +    +  E +++  + +    K  ++   + E   +NF  
Sbjct: 188 KKVQKL-QRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNNFMI 246

Query: 503 VVERFNS------LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                N+      L  +   +   +HG+MS   + + +  F+     +LI+T V   G+D
Sbjct: 247 FCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFRAKNRSILISTDVASRGLD 306

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +    I+I  +        +H++ GR  R       I    
Sbjct: 307 IPHVDIVINFDIPTHSKDYIHRV-GRTARAGRSGRSITFIT 346


>gi|189193873|ref|XP_001933275.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187978839|gb|EDU45465.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 686

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/390 (16%), Positives = 139/390 (35%), Gaps = 56/390 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGG--------- 322
           PT  Q+ +I  +   M  ++ M        GSGKT   L  +   A + G          
Sbjct: 218 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILAQAFQNGPSPPPQQAQG 271

Query: 323 ----------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                      ++++AP   L  Q ++  +K+   + +   ++ G      + + +ER  
Sbjct: 272 GYGRQRKAYPTSLVLAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIER-- 329

Query: 373 HGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
                +++ T     D I+  +        L+L   D     G + +++   +       
Sbjct: 330 --GCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRIVEGED---- 383

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            M  T   +TL+ ++    DI  +  +   +  I   +  +    E I +    + +  K
Sbjct: 384 -MPPTAGRQTLMFSATFPRDIQMLA-RDFLKDYIFLSVGRVGSTSENITQKIEYVEDVDK 441

Query: 485 AYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
              +   +              + + +  +    +       IHG  +  ++E  ++ F+
Sbjct: 442 RSVLLDILHTHGAGLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFR 501

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G C +L+AT V   G+D+ + + ++  +        +H++ GR GR          ++ 
Sbjct: 502 TGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI-GRTGRAGNTGIATAFFNR 560

Query: 599 PLSKNSYTRLSVLKNTED---GFL--IAEE 623
                    L +LK       GFL  IA E
Sbjct: 561 GNRGVVRDLLELLKEANQEVPGFLESIARE 590


>gi|254247597|ref|ZP_04940918.1| Helicase [Burkholderia cenocepacia PC184]
 gi|124872373|gb|EAY64089.1| Helicase [Burkholderia cenocepacia PC184]
          Length = 521

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/368 (18%), Positives = 126/368 (34%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 56  TPTPIQAQAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 109

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 110 PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSAELRR----GVEILI 165

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATP 430
            T     D +Q           L+L   D     G    L+            LL +AT 
Sbjct: 166 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 225

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
                 L  T L +    ++    +    +  ++  +   D+    ++++   G K   +
Sbjct: 226 SGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIV 285

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      + IHG  + I++   +D+FK G  + L+AT
Sbjct: 286 F--------CNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEALVAT 337

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 338 DVAARGLDIAELPAVINFDLPFSAEDYVHRI-GRTGRAGATGDALSLCSPNERKQLADIE 396

Query: 609 SVLKNTED 616
            ++K   D
Sbjct: 397 KLIKRPLD 404


>gi|115444197|ref|NP_001045878.1| Os02g0146600 [Oryza sativa Japonica Group]
 gi|75325389|sp|Q6Z2Z4|IF4A3_ORYSJ RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 23;
           AltName: Full=eIF4A-2
 gi|45736055|dbj|BAD13081.1| putative translational initiation factor eIF-4A [Oryza sativa
           Japonica Group]
 gi|113535409|dbj|BAF07792.1| Os02g0146600 [Oryza sativa Japonica Group]
 gi|125538069|gb|EAY84464.1| hypothetical protein OsI_05839 [Oryza sativa Indica Group]
 gi|215707096|dbj|BAG93556.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222622164|gb|EEE56296.1| hypothetical protein OsJ_05367 [Oryza sativa Japonica Group]
          Length = 414

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    Q++++A
Sbjct: 63  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVECQSLVLA 116

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 117 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS----GVHVVVGTPGRVFD 172

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            ++   L        +L   DE    G + ++                 P  +  V ++ 
Sbjct: 173 MLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDI---------FQLLPPKIQVGVFSAT 223

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKKES- 498
              +  +IT K    KP++ ++       E I++  V +  E  K   +C   E    + 
Sbjct: 224 MPPEALEITRKFMN-KPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQ 282

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  
Sbjct: 283 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR 342

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        LH++ GR GR       I      
Sbjct: 343 GIDVQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRD 387


>gi|313231677|emb|CBY08790.1| unnamed protein product [Oikopleura dioica]
          Length = 863

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 136/380 (35%), Gaps = 44/380 (11%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGG 322
             PT  Q +AI  IL           I     GSGKT   +  +   V          G 
Sbjct: 250 LDPTPIQSTAIPQILAGRDV------IGIAQTGSGKTAGFVWPIIYHVTKQRPLKYGDGP 303

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+IMAP   L QQ Y  ++K+ +N     V I  G +    + K L+        I++ 
Sbjct: 304 MALIMAPTRELCQQLYAEVRKFAKNYDSFRVGICFGGVNMYEQGKELKM----GVEILVA 359

Query: 382 THALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D +     +  K  ++ +DE  R          +             P  + L 
Sbjct: 360 TPGRLIDHVKKGNTELSKCTIICLDEADRMLELGFEPQVRSICNHVR------PDKQCLF 413

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     I ++  +     P+K     I +++E + +   +L + +K  W+   I +  
Sbjct: 414 FSATFKKVIERLATEVLN-DPVKLTQGQIGQVNENVTQTFKILGQDQKLQWLLNNIVQLN 472

Query: 497 ES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      ++     +   +       +IHG M   ++  V+ +FK      LIAT 
Sbjct: 473 SVGSLLVFVTRKADCVTVHEELKKSGYKTGVIHGDMHQAERNDVIKAFKKQQLATLIATD 532

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR  R     + I L  P  S+ +   L 
Sbjct: 533 VAARGLDISHIKTVINYDPARNYDTHVHRV-GRTARAGNTGTAISLLTPQDSEYAGIVLR 591

Query: 610 VLKNTEDG-----FLIAEED 624
            ++ T+         +A +D
Sbjct: 592 SIETTKQPVPDEMLRLAMKD 611


>gi|34496458|ref|NP_900673.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34102311|gb|AAQ58677.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 441

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 128/376 (34%), Gaps = 49/376 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
            PT  QE AI  +L           +     G+GKT   ++ +   ++            
Sbjct: 23  QPTPIQEKAIPLVLSGRD------LLAAAQTGTGKTAAFMLPILERLKKFANTSVSPAMH 76

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A++++P   LA Q    ++ YT+   +    + G +    + + L R       I+I
Sbjct: 77  PIRALVLSPTRELADQIGVNVQTYTKYLPLRATTVFGGVNMDPQTQELRR----GVEILI 132

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTAT- 429
            T     D IQ           L+L   D     G  Q  R  +         LL +AT 
Sbjct: 133 ATPGRLLDHIQQKTVQLNKVEVLVLDEGDRMLDMGFIQDIRKIMGMLPKERQTLLFSATF 192

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV-IERLKVVLSEGKKAYW 487
            P  + L    +      ++  + A    ++ ++  ++   +  +    +   E  +   
Sbjct: 193 APEIKRLAADFMHAPQTVEVARQNATNDQVEQLVFQVDNFKKRQLLAHLIRSREMSQVIV 252

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C           +   ++     +        IHG  +   +   +  FK G  ++L+A
Sbjct: 253 FC---------KTKISADQLARDLKRDGLDAEAIHGDKTQGARLETLAGFKEGKLRVLVA 303

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+ +   ++           +H++ GR GR       I L  P  S+     
Sbjct: 304 TDVAARGLDISELPYVVNFELPTSPEDYVHRI-GRTGRAGAKGIAISLMCPDESRQHEAI 362

Query: 608 LSVLKNTE-----DGF 618
             + K T      DGF
Sbjct: 363 EKLTKQTLTPQSVDGF 378


>gi|320322003|gb|EFW78099.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 625

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLASK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|255950086|ref|XP_002565810.1| Pc22g19070 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592827|emb|CAP99195.1| Pc22g19070 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 682

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/379 (16%), Positives = 136/379 (35%), Gaps = 55/379 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGGQA------- 324
           PT  Q+ ++  +   M+ ++ M        GSGKT   L  +   A + G  A       
Sbjct: 222 PTPVQKYSVPIV---MNGRDLM---ACAQTGSGKTGGFLFPILSQAFQNGPSAAPVQGGG 275

Query: 325 ---------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                          +I+AP   L  Q +E  +K+   + +   ++ G      + + +E
Sbjct: 276 GQFSYGRQRKAYPTSLILAPTRELVSQIFEEARKFAYRSWVRPCVVYGGADIGSQLRQIE 335

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP 421
           R       +++ T     D I+  +        L+L   D     G + +++   +    
Sbjct: 336 R----GCDLLVATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEPQIRRIVEGEDM 391

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            V+        +TL+ ++    DI  +  +   +  I   +  +    E I +    + +
Sbjct: 392 PVV-----DNRQTLMFSATFPRDIQMLA-RDFLKDYIFLSVGRVGSTSENITQKVEYVED 445

Query: 482 GKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
             K   +   +     +         + + +  +    +       IHG  +  ++E  +
Sbjct: 446 ADKRSVLLDILHTHGSTGLTLIFVETKRMADSLSDFLINQRFPATAIHGDRTQRERERAL 505

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F+NG C +L+AT V   G+D+ + + +I  +        +H++ GR GR         
Sbjct: 506 ELFRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRI-GRTGRAGNTGIATA 564

Query: 595 LYHPPLSKNSYTRLSVLKN 613
            ++          L +LK 
Sbjct: 565 FFNRGNRGVVRDLLELLKE 583


>gi|50119665|ref|YP_048832.1| ATP-dependent RNA helicase DeaD [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610191|emb|CAG73633.1| ATP-independent RNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 637

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/389 (19%), Positives = 145/389 (37%), Gaps = 44/389 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LTDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFALPLLNNLKPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    + ++   + V  + G      R     R   G A I++
Sbjct: 75  PQMLVLAPTRELAVQVAEACSDFAKHMHGVNVVALYGG----QRYDVQLRALRGGAQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPATHQTALFSATM 190

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + D    +I      R  I      +  + +    ++ + +E   A  I
Sbjct: 191 PEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAII 250

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +LIAT
Sbjct: 251 FVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDILIAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L              
Sbjct: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVE-------NRER 354

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIK 637
            +L+N E    +A  +++     E+LG +
Sbjct: 355 RLLRNVERTMKLAIPEVELPNA-ELLGQR 382


>gi|325474437|gb|EGC77624.1| DEAD/DEAH box family ATP-dependent RNA helicase [Treponema
           denticola F0402]
          Length = 570

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 153/435 (35%), Gaps = 57/435 (13%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + ++  + Q +       PT  Q  AI  +L   +       I +   G+GKT    + +
Sbjct: 8   LGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEAN-----VIAKARTGTGKTAAFGLPL 62

Query: 315 AAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
              + +     +A+I+ P   LA Q    ++ +       +  + G      + ++L+  
Sbjct: 63  VQELRSNTGKVRALILVPTRELAVQVAGELESFRIEEYPRIATVYGGAAIGPQLRSLKT- 121

Query: 372 AHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHV 423
                 I++GT     D ++   L        IL   DE    G  + ++          
Sbjct: 122 ---GVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLNMGFIEDIENI-------- 170

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
               A P  R L+ ++     I  I     G   I        R   + E+   V+ EG 
Sbjct: 171 -FSKANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEER-ASLTEQFFWVVREGD 228

Query: 484 KAYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           K   +   I+             +   +      +      A +HG +    +E +++ F
Sbjct: 229 KTEALVRLIDTSPNFYGLVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERF 288

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++   ++L+AT V   GID+   S ++     + G    H++ GR GR       +    
Sbjct: 289 RSKKTRILVATDVAARGIDIEGISHVVNYAIPYDGPTYTHRI-GRTGRAGAAGVAVSFVR 347

Query: 598 PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           P    N   R+  L+    G         + KEG+I  I+Q  + +    +      L E
Sbjct: 348 P----NEVKRIEYLRKHARG---------ELKEGKIPSIEQ--VIEIKRTRI-----LKE 387

Query: 658 IARKDAKHILTQDPD 672
            A +  K I  + P+
Sbjct: 388 TAAQIEKRISEEKPE 402


>gi|226229135|ref|YP_002763241.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
           T-27]
 gi|226092326|dbj|BAH40771.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
           T-27]
          Length = 594

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 123/373 (32%), Gaps = 44/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
            PT  Q +AI  +L+          +     G+GKT    + +   +         G   
Sbjct: 36  EPTPVQRAAIPPLLEGKDV------LALAATGTGKTAAFSLPLLTRIAEKGRRAGNGPGV 89

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E + +Y +   +    + G      + +AL R       ++I T  
Sbjct: 90  LILVPTRELAMQVAEAVHRYGKPLGLQALAVYGGASMELQVRALRR----GVDVVIATPG 145

Query: 385 LFQDSIQYYKLI--------LVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT 434
              D I+   L+        L   DE    G  + L   L          L +AT  PR 
Sbjct: 146 RAVDHIKRGTLVFDGLSAVVLDEADEMLDMGFAEELEAILDATPENKQTALFSATLPPRI 205

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW--ICPQI 492
             +          +         ++  ++       V +   VV    K      +    
Sbjct: 206 GGIAQKHLRQPVHV--------KVEREVVAEGESARVRQVAYVVSRAHKMPALARVLDIE 257

Query: 493 EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +      F       + L E  T+       +HG +S   ++ VM  F+     LLIAT 
Sbjct: 258 QPTSAIVFCRTRTEVDELSETLTARGLRAEALHGGLSQDQRDRVMQKFRARKVDLLIATD 317

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV   S ++  +        +H++ GR GR       +    P  +       +
Sbjct: 318 VAARGLDVKHVSHVVNFDVPVDAETYVHRI-GRTGRAGREGVAVTFAEPREN---RLLRN 373

Query: 610 VLKNTEDGFLIAE 622
           + + T     IA+
Sbjct: 374 IERQTGQKIEIAQ 386


>gi|146419062|ref|XP_001485496.1| hypothetical protein PGUG_03226 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 676

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 159/420 (37%), Gaps = 41/420 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------EAGGQA 324
            PT  Q  AI               I     GSGKTL  LI MA A+         G + 
Sbjct: 267 EPTAIQCEAIPA------SAEGRDLIACAPTGSGKTLAYLIPMAQALISSPKTKNYGIRG 320

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           V++AP   LA Q Y+ +    + + + V +++    Q   + +   I+  +  ++I T  
Sbjct: 321 VVIAPTNELAIQIYQTLAPMCRGSNLNVTLLS---KQVASKISSSIISANKFDVLICTPL 377

Query: 385 LFQDSIQYYKLILVIVDE----------QHRFGVQQRLKLTQKATAPHVLLMTATPIP-- 432
              D ++  ++ L  V+            H F  Q    L+          M +  IP  
Sbjct: 378 RLIDLVKKEQVDLSKVEHLVIDEADKLFDHGFVEQTDEILSHCTLPTRRTSMFSATIPSG 437

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              +  + + D     +  K      I   ++     +  +  ++ ++ +G+    I   
Sbjct: 438 VEEMANSIMKDQIRIIVGHKEGASTSIDQKLVFTGNEEGKLLAIRQMVQQGEFKPPIIIF 497

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           ++    +        ++ L      ++ +IH   +   +E  +  FKNG   +LI T V+
Sbjct: 498 LQSIPRAKALFHELIYDKL------NVEVIHAERTPKQREEAIRRFKNGDAWVLITTDVL 551

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D    +++I  +      A +H++ GR GRG +    +  +           L+V+
Sbjct: 552 ARGVDFKGVNLVINYDVPQTSQAYVHRI-GRTGRGGKEGKAVTFFTKEDKLAIKPVLNVM 610

Query: 612 KNTE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           K +   +G+    E +++  + E   IKQ  + +  I+       ++   RK  K ++  
Sbjct: 611 KQSGCHEGYSEWMESMEKLTKKEKQQIKQHEIKRKKISTVP---QVVSKKRKQRKEMIEA 667


>gi|72384374|ref|NP_062426.2| nucleolar RNA helicase 2 [Mus musculus]
 gi|74213643|dbj|BAE35625.1| unnamed protein product [Mus musculus]
 gi|112180476|gb|AAH43655.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
 gi|148700139|gb|EDL32086.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Mus
           musculus]
          Length = 851

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 143/423 (33%), Gaps = 72/423 (17%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------GQAV 325
             Q      +            I Q   G+GKT    I +   ++ G          Q +
Sbjct: 283 PIQAKTFHHVYSGKD------LIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVL 336

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  +     T+  ++ V    G  P   +   +ER+  G   I++GT   
Sbjct: 337 VLAPTRELANQVSKDFSDITK--KLSVACFYGGTPYGGQ---IERMRSG-IDILVGTPGR 390

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +D +Q  KL        +L  VD+    G   +++              +   P+TL+ 
Sbjct: 391 IKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKD----SEDNPQTLLF 446

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEK 495
           ++     +  + +K       +  +I        I  E L +     ++A  I   I   
Sbjct: 447 SATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVY 506

Query: 496 KESNFR-----SVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                R        +    L ++         +HG +    +E  +  F+NG   +L+AT
Sbjct: 507 SGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVAT 566

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +  +++         + +H+  GR GR      CI  Y            
Sbjct: 567 NVAARGLDIPEVDLVVQSCPPKDVESYIHR-SGRTGRAGRTGVCICFY------------ 613

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
                 ++ + +A+             ++Q    KF          +++ + KDA  +L 
Sbjct: 614 ----QNKEEYQLAQ-------------VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLD 656

Query: 669 QDP 671
             P
Sbjct: 657 SVP 659


>gi|328955216|ref|YP_004372549.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
           PW2]
 gi|328455540|gb|AEB06734.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
           PW2]
          Length = 618

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 138/371 (37%), Gaps = 45/371 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------------ 319
           +PT  Q ++I  +L       +   +     G+GKT   L+   + +             
Sbjct: 79  TPTPVQAASIPSVLA------KRDILAAAQTGTGKTAAFLLPAMSNLGHVVHQGRSRRSA 132

Query: 320 --AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
              G + +I+ P   LAQQ      +    T+ I   + G +    ++ AL R       
Sbjct: 133 EGRGPKMLIITPTRELAQQIDSVCTQIATRTKHIAVTVVGGVGYNPQKSALRR----GCD 188

Query: 378 IIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMT 427
           I++ T     D I      L  V     DE  R      L   ++           LL +
Sbjct: 189 ILVATPGRLIDLIDQGVCNLSEVEILVIDEADRMLDMGFLPSVKQIVALTPPERQTLLFS 248

Query: 428 ATPIPRTL--VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           AT   +TL  +   + D    +I    +    +   ++P++   +    ++V+  EG   
Sbjct: 249 ATLDEKTLGSIRDLVRDPVRVEIAAATSTADTVDQFVLPVSFDSKNDVLVEVLKREGASR 308

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             +  + + + +S  R           H   S A IHG  S   +E  + +F++G   +L
Sbjct: 309 VIVFMRTKHRADSCCRR--------LTHAGISAAAIHGDRSQAQRERALKAFRDGRSDVL 360

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT VI  GID+ D   ++  +     +  +H++ GR GR  E+   +           Y
Sbjct: 361 VATDVIARGIDISDVRYVVNFDVPGEPIDYIHRI-GRTGRAGEVGWALTFVTRQDIDEFY 419

Query: 606 TRLSVLKNTED 616
              S++  T +
Sbjct: 420 DIESLMGKTAE 430


>gi|300722435|ref|YP_003711723.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628940|emb|CBJ89523.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus nematophila ATCC 19061]
          Length = 498

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 128/362 (35%), Gaps = 40/362 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+ AI  +L           +     G+GKT    + +   +             
Sbjct: 23  EPTPIQQQAIPVVLSGKD------LLASAQTGTGKTAGFTLPILQRLSESPTQVKGRRPV 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E +  Y++  ++   ++ G +    +   L     G   I++ T
Sbjct: 77  RALILTPTRELAAQVGENVHNYSKYLKLRSFVVFGGVSINPQMMKLR----GGVDILVAT 132

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTAT--P 430
                D     ++    + ++I+DE  R          R  L +       LL +AT   
Sbjct: 133 PGRLLDLEHQNAVDLSHVEILILDEADRMLDMGFIHDIRRILNKLPAKRQNLLFSATFSD 192

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + L    L D    ++  + +  + I   I  +++  +      ++ S+  +   +  
Sbjct: 193 EIKNLANKLLNDPVSVEVARRNSASEQIAQSIHFVDKKRKGELLSYMIGSQNWQQVLVFT 252

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +    +   L      + A IHG  S   +   +  FK+G  + L+AT +
Sbjct: 253 RT--------KHGANKLAELLNKDGVTAAAIHGNKSQGARTRALADFKSGQIRALVATDI 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+     ++     +     +H++ GR GR +     I L      K       +
Sbjct: 305 AARGLDIDQLPHVVNYELPNVAEDYVHRI-GRTGRADATGQAISLVCVDEHKLLKDIERL 363

Query: 611 LK 612
           LK
Sbjct: 364 LK 365


>gi|260592210|ref|ZP_05857668.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
 gi|260535844|gb|EEX18461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
          Length = 573

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 125/360 (34%), Gaps = 42/360 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL+          +     G+GKT   L+ + + +  GG        VIM
Sbjct: 25  TPVQEKCIPEILKGHDV------LGVAQTGTGKTAAYLLPVLSKLADGGYPESAINCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ +      +  +        +R     +     A ++I T   F 
Sbjct: 79  SPTRELAQQIDQAMQGFAYYLNGVSCVAVYGGNDGNRYDQELKSLSLGADVVIATPGRFI 138

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVL 437
             +    +        IL   D     G  + +    K        ++ +AT   +   L
Sbjct: 139 SHLSLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLPNTCQTIMFSATMPKKIEEL 198

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC------PQ 491
                 +  +I              + +++  E I ++  V  E +K   +         
Sbjct: 199 AKTLLKNPVEIK-------------LAVSKPAEKIHQMAYVCYETQKMGILKDVFKGGNM 245

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                 S  +  V+R          +   +H  +    +  +M  FK+G   +L+AT ++
Sbjct: 246 KRVIIFSGSKQKVKRIAGALSRKHINCGEMHSDLDQEQRNDIMFKFKSGQVDVLVATDIV 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ D +++I  +  H     +H++ GR  R +   + I L +           S L
Sbjct: 306 SRGIDIDDITMVINYDVPHDVEDYVHRI-GRTARADHDGTAITLVNADDIYFFQQIESFL 364


>gi|288942468|ref|YP_003444708.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288897840|gb|ADC63676.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 438

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 118/346 (34%), Gaps = 37/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ------AV 325
            PT  Q  AI  +L       R   +     G+GKT    + M   +    Q      A+
Sbjct: 23  QPTPIQSKAIPAVLA------RRDVLAAAQTGTGKTAAFTLPMLHLLSQSTQRQRAPRAL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E +  Y Q+  +    I G +    +  AL R       I++ T   
Sbjct: 77  VLTPTRELAAQVGESVSTYGQHLPLRALQIFGGVGMVPQTTALRR----GVDILVATPGR 132

Query: 386 FQDSI-----QYYKLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTATPIPRTL 435
             D +        K+   ++DE  R          R  L    +    LL +AT      
Sbjct: 133 LLDHVGQGHVDLSKIEFFVLDEADRMLDMGFIHDIRRVLKLLPSKRQNLLFSATYSREIE 192

Query: 436 VLTSLGDIDISKITEKPAGR--KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L      D  +I   P     + +  V+ P+ R  +      ++L    +   I  +  
Sbjct: 193 QLAIGLLHDPLRIEVAPRNTAAETVTQVVHPVAREAKRSLLSHLILQGDWQQVLIFTRT- 251

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R          + A IHG  S   +   +  FK+G  + L+AT +   
Sbjct: 252 -------KHGANRLAEQLGRDGITAAAIHGNKSQGARTRALADFKSGALRALVATDIAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+     ++     +     +H++ GR GR     + + L  P 
Sbjct: 305 GLDIDRLPHVVNFELPNVPEDYVHRI-GRTGRAGSDGTAVSLISPD 349


>gi|193066966|ref|ZP_03047935.1| ATP-independent RNA helicase DbpA [Escherichia coli E110019]
 gi|192959556|gb|EDV89990.1| ATP-independent RNA helicase DbpA [Escherichia coli E110019]
          Length = 457

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 135/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++         A +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEAHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|166711813|ref|ZP_02243020.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 458

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 83/460 (18%), Positives = 167/460 (36%), Gaps = 63/460 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + ++  T  Q  ++  IL+ +        I Q   GSGKT    + +   ++     
Sbjct: 17  IDALGYTVLTPIQAQSLPPILRGLDV------IAQAPTGSGKTAAFGLGLLQKLDPALTR 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + ++K       + + ++TG MP   +  +LE       H+++
Sbjct: 71  AQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEA---HDPHVVV 127

Query: 381 GTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    Q+  +           L+L   D     G ++ ++        H          
Sbjct: 128 GTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKH---------R 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           ++L+ ++     I  +  +   + PI+  +   +   E+ ++   V    ++       +
Sbjct: 179 QSLLFSATFPHIIRALA-REILKDPIEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLL 237

Query: 493 EEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
               E      N R  V+        F  S   +HG M   D++ V+  F N +C +L+A
Sbjct: 238 RFTPESSVVFCNTRKEVDEVAGSLHEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY-- 605
           + V   G+DV D S ++            H++ GR  R  +    + L  P  +  +   
Sbjct: 298 SDVAARGLDVEDLSAVVNYELPTDTETYRHRI-GRTARAGKHGLALSLVAPRETARAQAL 356

Query: 606 --------TRLSVLKNTEDGFLI---AEEDLKQ-------RKEGEILG--IKQSGMPKFL 645
                           T     +   A   L+         + G+ILG    ++G+    
Sbjct: 357 EAEQGQPLKWSRAPLATARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAA 416

Query: 646 IAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           I +  ++   S + IAR      L        ++G+  R+
Sbjct: 417 IGKIAIYPTRSYVAIARAQVAKALAHL-HAGKIKGRRFRV 455


>gi|119179097|ref|XP_001241172.1| hypothetical protein CIMG_08335 [Coccidioides immitis RS]
 gi|118597485|sp|Q1DMX8|PRP28_COCIM RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
          Length = 817

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 135/388 (34%), Gaps = 55/388 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------------ 319
            P+  Q +AI   LQ+         I     GSGKT   L+ +   +             
Sbjct: 399 DPSPIQRAAIPIALQNRD------LIGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEWRK 452

Query: 320 -AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G  A+I+AP   LAQQ     +K+       V  I G      +  +L       A I
Sbjct: 453 SDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSLEEQSFSLRN----GAEI 508

Query: 379 IIGTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLT--------------- 415
           II T     D I+   L+L           D     G ++ +                  
Sbjct: 509 IIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDTEE 568

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            + A A    L       +T++ T+     + +I  K   R  I T+      +D V +R
Sbjct: 569 AEDARAMSQHLGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAVDTVEQR 628

Query: 475 LKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           ++ +  E K+   +   +   +         N +   +      +    S   +HG  + 
Sbjct: 629 VEFISGEDKRKKRLADILASGEFRPPIIVFVNIKRNCDAVARDIKQMGYSSVTLHGSKTQ 688

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +E+ + S +NG   +L+AT +   GIDV D S+++  N      +  H++ GR GR  
Sbjct: 689 EQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRI-GRTGRAG 747

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +    I       +   Y    +L  + 
Sbjct: 748 KSGVAITFLGNEDADVMYDLKQMLMKSS 775


>gi|328910410|gb|AEB62006.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens LL3]
          Length = 480

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/376 (19%), Positives = 136/376 (36%), Gaps = 37/376 (9%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           +  + F   T  Q   I   L +         I Q   G+GKT    I +   +      
Sbjct: 4   INRMGFEEATPIQAQTIPLGLLNKDV------IGQAQTGTGKTAAFGIPLVEKMNPESPN 57

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++AP   LA Q  E + K  Q+ +  V  I G      + +AL++      HII+G
Sbjct: 58  IQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKK----NPHIIVG 113

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTAT-- 429
           T     D I    + L  V        DE    G    +   L+   +    LL +AT  
Sbjct: 114 TPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMP 173

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            PI R +    + + +  K+  K      I+   + +    +     +++  +  +   +
Sbjct: 174 APIKR-IAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIV 232

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +       R V E   +L+    ++  I HG ++   +   +  FK G  ++L+AT
Sbjct: 233 FGRTK-------RRVDELAEALNLRGYAAEGI-HGDLTQAKRMVALRKFKEGAIEVLVAT 284

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+   + +   +      + +H++ GR GR  +    +    P          
Sbjct: 285 DVAARGLDISGVTHVYNFDVPQDPESYVHRI-GRTGRAGKTGMAMTFITPREKSMLRAIE 343

Query: 609 SVLKNTEDGFLIAEED 624
              K   D       D
Sbjct: 344 QTTKRKMDRMKEPTLD 359


>gi|265991134|ref|ZP_06103691.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265999460|ref|ZP_05466486.2| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|263001918|gb|EEZ14493.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094098|gb|EEZ18020.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409073|gb|ADZ66138.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis M28]
          Length = 462

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 128/347 (36%), Gaps = 39/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            P   Q  AI   L+          +     GSGKT    + +   +            +
Sbjct: 36  EPKPIQTQAIPSQLEGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTAR 89

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  + I+  +++  I   ++ G + +  + K +         ++I T 
Sbjct: 90  ALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATP 145

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPR 433
               D +        Q   L+L   D     G    +K   KAT       L +AT    
Sbjct: 146 GRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKE 205

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L      D  ++   P G     I  V+ P+   ++      ++     ++  +  +
Sbjct: 206 IASLAERLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTR 265

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +   ++  R          E     +A IHG  S   ++  ++ F++GT ++L+AT + 
Sbjct: 266 TKHGADAVVRH--------LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIA 317

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 318 ARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 363


>gi|229844936|ref|ZP_04465073.1| hypothetical protein CGSHi6P18H1_04237 [Haemophilus influenzae
           6P18H1]
 gi|229812070|gb|EEP47762.1| hypothetical protein CGSHi6P18H1_04237 [Haemophilus influenzae
           6P18H1]
          Length = 613

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 132/364 (36%), Gaps = 36/364 (9%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+S I  +L           +     GSGKT    + + A +   E   
Sbjct: 21  SDLGFETPSPIQQSCIPHLLNG------NDVLGMAQTGSGKTAAFALPLLAQIDPSEKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  + + +      +  + G      R     R     A +++G
Sbjct: 75  QMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGG----QRYDIQLRALKQGAQVVVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 131 TPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMP 190

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I      ++ + +    L+ +  E   A  I 
Sbjct: 191 EPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +NG+  +++AT 
Sbjct: 251 ARTKTGTLD--------ITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S+++  +      + +H++ GR GR       +L   P   +       
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEH 361

Query: 610 VLKN 613
           ++K 
Sbjct: 362 LMKK 365


>gi|255559772|ref|XP_002520905.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539871|gb|EEF41450.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 407

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 134/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ A+  I++          I Q   G+GKT +  +     V+      QA+I++
Sbjct: 56  KPSAIQQRAVMPIIKGRDV------IAQAQSGTGKTSMIALTACQLVDTSSREVQALILS 109

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        I      G        + LE       H++ GT     D
Sbjct: 110 PTRELAAQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEY----GVHVVSGTPGRVCD 165

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G + ++            V+L++AT     L +T
Sbjct: 166 MIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEMT 225

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    D  KI  K      + IK   + + R +   + L  +       +A   C     
Sbjct: 226 SKFMTDPIKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT--- 282

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+       +   +++ +HG M   +++++M  F++GT ++LI T V   G
Sbjct: 283 ------KRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFQSGTTRVLITTDVWARG 336

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S++I  +  +     +H++ GR GR       I        K            
Sbjct: 337 LDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKSDDIKILRDMEQYYSTQ 395

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 396 IDEMPMNVADL 406


>gi|320175526|gb|EFW50622.1| Cold-shock DEAD-box protein A [Shigella dysenteriae CDC 74-1112]
          Length = 626

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW--GMRKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 TAE---GEELDLETLAAALLKMA 432


>gi|324506443|gb|ADY42751.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 543

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/414 (17%), Positives = 139/414 (33%), Gaps = 41/414 (9%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF----SPTKSQESAI 281
            R  ++     Q   +++  + K                 + ++ +     PT  Q  + 
Sbjct: 85  RRSQFEVDAWYQQNQVVV--EGKSIPRPVFEFTEANFPAPITDLLYGSFQKPTIIQSISW 142

Query: 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAM--------AAAVEAGGQAVIMAPIGIL 333
              +           +     GSGKTL  ++          A +   G   +++ P   L
Sbjct: 143 PIAMSGRD------IVSIAKTGSGKTLAFILPAIVHTANQQARSHREGPSVLVLLPTREL 196

Query: 334 AQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393
           AQQ  +  K Y +     +  + G  P++ + + LER       +II T     D ++  
Sbjct: 197 AQQVQDVAKDYCKVMGQSLTCLFGGAPKSGQARDLER----GVDVIIATPGRLMDFLESG 252

Query: 394 K--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP--RTLVLTSLG 441
           K        L+L   D     G + +++    Q       L+ +AT     R L +    
Sbjct: 253 KTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMFSATWPKDVRKLAMDFQT 312

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
           D     +           T I+ +       +RL  +LS+        P+ +       +
Sbjct: 313 DAAHLNVGSLELAANHNITQIVEVLEESSKQQRLISILSDIMSE----PECKTIIFVETK 368

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              +               IHG     +++  +  FK G   +L+AT V   G+DV D  
Sbjct: 369 RKADDLTRWMRRDGWPALCIHGDKGQSERDWALGEFKAGKTPILLATDVAARGLDVDDIK 428

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
            +I  +  +     +H++ GR GR E+  +    +       +   + VL+   
Sbjct: 429 YVINYDYSNNSEDYVHRI-GRTGRCEKRGTAYTFFTYANGPKARDLIKVLQEAN 481


>gi|313112968|ref|ZP_07798612.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624733|gb|EFQ08044.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 638

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/348 (19%), Positives = 133/348 (38%), Gaps = 38/348 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q +AI  +L           +     G+GKT    + M   + A         +A
Sbjct: 23  TPSPIQAAAIPPVLSGRD------LMGCAQTGTGKTAAFALPMLDRLTANAPRRKGAIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E    Y +  ++   +I G + QA + +AL++       I+I    
Sbjct: 77  LILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVEALKK----GVDILIACPG 132

Query: 385 LFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D I         L + ++DE  R      +   +K      ++       + L+ ++
Sbjct: 133 RLNDLIGQGFIDLSNLEIFVLDEADRMLDMGFVHDVKK------VIAKLPGERQNLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY---WIC-----PQ 491
               +I ++      RKP    + P++   + I++    + +G K +   W+      P 
Sbjct: 187 TMPTEIEQLAA-GILRKPAFVKVDPVSSTVDRIQQSLYHVEKGNKKFLLPWLIKNLQPPV 245

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +     S  +   ++            A IHG  S   + + +++FK G  K+L+AT + 
Sbjct: 246 VNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALENFKAGKTKVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             GID+ + S +   +        +H++ GR  R     + +    P 
Sbjct: 306 ARGIDISELSHVFNYDLPEVPETYVHRI-GRTARAGADGTAVSFCAPE 352


>gi|302134631|ref|ZP_07260621.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato NCPPB 1108]
          Length = 629

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|238918430|ref|YP_002931944.1| ATP-dependent RNA helicase DeaD [Edwardsiella ictaluri 93-146]
 gi|238867999|gb|ACR67710.1| cold-shock deAd box protein a [Edwardsiella ictaluri 93-146]
          Length = 634

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 136/370 (36%), Gaps = 44/370 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q + I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAACIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLNNIDPSLKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQVLVLAPTRELAVQVAEAMADFSKHMHGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++           L+L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   T +  + + + ++  L+    +   
Sbjct: 191 PEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWT-VYGMRKNEALVRFLEAEDFDAAI 249

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +               + +E   +L  +  SS A+ +G M+   +E  ++  K+G   +
Sbjct: 250 IFV----------RTKNATLEVAEALERNGYSSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVDRISLVVNYDIPMDAESYVHRI-GRTGRAGRAGRALLFVDNRERRLL 357

Query: 605 YTRLSVLKNT 614
                 +K T
Sbjct: 358 RNIERTMKLT 367


>gi|213579752|ref|ZP_03361578.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 556

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LTDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW--GMRKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 SAE---GEELDLETLAAALLKMA 432


>gi|73996628|ref|XP_863206.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 11 [Canis familiaris]
          Length = 811

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 84/404 (20%), Positives = 144/404 (35%), Gaps = 51/404 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            PT  Q  AI   LQ+         I   + GSGKT   LI + + +E    G  A+I+A
Sbjct: 413 EPTPIQRQAIPIGLQNRD------IIGVAETGSGKTAAFLIPLLSGIEESDQGPYAIILA 466

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  E   K+ +   I    + G + +  +   L         I+I T     D
Sbjct: 467 PTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCE----IVIATPGRLID 522

Query: 389 SIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATP------------- 430
            ++   L+L      ++DE  R          Q     H+ +    P             
Sbjct: 523 VLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQ-KILEHMPVSNQKPDTDEAEDPEKMLA 581

Query: 431 --------IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
                     +T++ T+     + ++      R+P    I    +  E +E+   ++SE 
Sbjct: 582 NFESGKHKYRQTVMFTATMPPAVERLARSYL-RRPAVVYIGSAGKPHERVEQKVFLMSES 640

Query: 483 KKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           +K   +   +E+  +       N +   +      E    +   +HG      +E  + +
Sbjct: 641 EKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSN 700

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            K G   +L+AT V   GID+ D S+++  +        +H++ GR GR  +    I   
Sbjct: 701 LKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRI-GRTGRAGKSGVAITFL 759

Query: 597 HPPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEILGIK 637
               S   Y     +     +     +A     Q K G IL  K
Sbjct: 760 TKEDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTKK 803


>gi|326801270|ref|YP_004319089.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326552034|gb|ADZ80419.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 442

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 145/360 (40%), Gaps = 35/360 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----AGGQAVIM 327
            PT  Q+ AI  IL        ++ I Q   G+GKT   ++ +   ++    +  +A+I+
Sbjct: 25  EPTAIQQKAITPILAG----QDVMGIAQ--TGTGKTAAYVLPIIMKLKYAQGSDPRALIL 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LA Q  E I+ + + T +   ++ G +    + +ALE+       I++ T   F 
Sbjct: 79  SPTRELAMQIEENIQLFAKYTDLRTVVLYGGLGPKQQIEALEK----GVDILVATPGRFL 134

Query: 388 D-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           D      I   ++ L+++DE  +      +         H +L       + L+ ++   
Sbjct: 135 DLYLAEHINTKQIKLLVMDEADKMMDMGFIGKI------HRILEVIPRKRQNLLFSATMS 188

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
             + KI         I  V       + V ++L  V +   K   +   ++  ++ +   
Sbjct: 189 ELVHKIAGDFLAFPTIVEVSPQATPANTVSQQLYFVPNTKTKINLLQYLLKNDEDFHRLI 248

Query: 503 VVERFNSL---------HEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           +  +  ++          ++    + +IH       + + +++FK G+ ++L+AT V   
Sbjct: 249 IFSKTKTIADNIYHFLSRKYGEDEVRVIHANKGQNTRINSINAFKEGSVRILVATDVAAR 308

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV D S +I  +        +H++ GR GR  +    I +  P  +        +++ 
Sbjct: 309 GLDVSDVSHVINFDIPIVIEDYVHRI-GRTGRATKSGIAISMCTPAEAYYITKIEKLIRQ 367


>gi|302874235|ref|YP_003842868.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689501|ref|ZP_07631947.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302577092|gb|ADL51104.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 536

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 123/344 (35%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q  +I   ++          I Q   G+GKT      +   +       QA+I+A
Sbjct: 27  EPSPIQSESIPVGIEGYD------LIGQAQTGTGKTAAFGSIILNNMSEKRRVPQALILA 80

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E + +  +N ++ +  I G  P   + +AL         I++GT     D
Sbjct: 81  PTRELAIQVNEELVRIAKNMRLNILPIYGGQPIDRQLRALRN----GVDIVVGTPGRVLD 136

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            ++   L        +L   DE    G    ++   K+              +TL+ ++ 
Sbjct: 137 HLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNED---------RQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I +++++          I         I +    +    +   +C  I+  +    
Sbjct: 188 MPDAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSDRFESLCRIIDADEPEAA 247

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+   S  +     +  +HG M+   + + +  FK      L+AT V   G
Sbjct: 248 IIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFLVATDVAARG 307

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           IDV + + +I  +      + +H++ GR GR  +      L  P
Sbjct: 308 IDVENVTHVINYDLPQDAESYVHRI-GRTGRANKEGKAYTLVTP 350


>gi|189211147|ref|XP_001941904.1| ATP-dependent RNA helicase DBP3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187977997|gb|EDU44623.1| ATP-dependent RNA helicase DBP3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 601

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 91/422 (21%), Positives = 157/422 (37%), Gaps = 50/422 (11%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           ++ +  +           +        +PT  Q +    +L        M+ +   + GS
Sbjct: 183 RKLRPILNFKYLPVDDAQRAFFAKFS-APTPIQAATWPFLL----SGRDMVGV--AETGS 235

Query: 305 GKTLVALIAMAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           GKTL   +     + A       G +AVI++P   LA Q Y+ +        + V  + G
Sbjct: 236 GKTLAFGVPCVRYISALPQEKRKGIKAVIVSPTRELAVQIYDQLVALATPAGLSVVCVYG 295

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRFGVQ--- 409
            +P+  +  A       +AHI++ T     D I        K   V++DE  R   +   
Sbjct: 296 GVPKDPQVAACR-----KAHIVVATPGRLNDLIGEGSADLSKAEYVVLDEADRMLDKGFE 350

Query: 410 --QRLKLTQKATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAG-------RKPI 458
              R  ++Q       L+ TAT  P  R L  T +       I +  +G        K +
Sbjct: 351 EAIRQIISQTPKKRQTLMFTATWPPSVRDLASTFMNSPVKITIGDNQSGELRANVRIKQV 410

Query: 459 KTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSI 518
             V+ P  +   +++ LK   S   K   I      KKE+       R  +        +
Sbjct: 411 VEVVDPRAKEQRLLQLLKQYQSGKNKDDRILVFCLYKKEAV------RIENFIRMKGFRV 464

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             IHG +S   + + + +FK G   LL+AT V   G+D+    ++I           +H+
Sbjct: 465 GGIHGDLSQEKRSASLAAFKEGHVPLLVATDVAARGLDIPAVKVVINVTFPLTAEDYVHR 524

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638
           + GR GR  +    I L+       S + ++VLK       + E   +  K G  +  K+
Sbjct: 525 I-GRTGRAGKEGLAITLFTDHDKALSGSLINVLKAANQ--PVPE---ELMKFGTTVKKKE 578

Query: 639 SG 640
            G
Sbjct: 579 HG 580


>gi|94266993|ref|ZP_01290640.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93452307|gb|EAT02944.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 509

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/412 (19%), Positives = 160/412 (38%), Gaps = 43/412 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +PT  Q +AI  +L           + Q   G+GKT    + + + ++      Q +++A
Sbjct: 29  TPTPIQAAAIGPLLAGRD------LLGQAQTGTGKTAAFALPLLSRLDTSRKYPQLLVLA 82

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+ Y+++     V  + G    A + +AL+R        ++GT    Q
Sbjct: 83  PTRELALQVADEIQAYSRHLPGFQVLPLYGGQNMAQQLRALQR----GVQAVVGTPGRIQ 138

Query: 388 DSIQYYKLILV--------IVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTL-- 435
           D ++   L L           DE  + G    +   L Q      V L +AT     +  
Sbjct: 139 DHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQRQVALFSATMTQEIMRI 198

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D +  ++  +    + I      +  + ++    +++ +E  +A  I  + +  
Sbjct: 199 ARRHLKDPEEIRLKTRTTTVETISQHYWLVQGLQKLDALTRILEAEAVEAMLIFVRTK-- 256

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                 + VE    L     +S A+ +G M+   +E  ++  K+GT  +++AT V   G+
Sbjct: 257 -----VATVELAEKLAARGFASAAL-NGDMTQGLREKTVEQLKDGTLDIVVATDVAARGL 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       I+   P   +  +      +   
Sbjct: 311 DVQRISHVVNYDIPYDTESYVHRI-GRTGRAGRQGQAIIFVAPREMRMLHAIEKATRQ-- 367

Query: 616 DGFLIAEEDLKQRKEGE---ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
               IA   L  R+E     I   K+  +        E  + L+  A  +A+
Sbjct: 368 ---QIARLQLPSRREVNQRRIDQFKEKIIAASRQPGLEFFEELIAQATAEAE 416


>gi|73996624|ref|XP_863165.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 9 [Canis familiaris]
          Length = 811

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 84/404 (20%), Positives = 143/404 (35%), Gaps = 51/404 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            PT  Q  AI   LQ+         I   + GSGKT   LI +   +E    G  A+I+A
Sbjct: 413 EPTPIQRQAIPIGLQNRD------IIGVAETGSGKTAAFLIPLLVKIEESDQGPYAIILA 466

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  E   K+ +   I    + G + +  +   L         I+I T     D
Sbjct: 467 PTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCE----IVIATPGRLID 522

Query: 389 SIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATP------------- 430
            ++   L+L      ++DE  R          Q     H+ +    P             
Sbjct: 523 VLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQ-KILEHMPVSNQKPDTDEAEDPEKMLA 581

Query: 431 --------IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
                     +T++ T+     + ++      R+P    I    +  E +E+   ++SE 
Sbjct: 582 NFESGKHKYRQTVMFTATMPPAVERLARSYL-RRPAVVYIGSAGKPHERVEQKVFLMSES 640

Query: 483 KKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           +K   +   +E+  +       N +   +      E    +   +HG      +E  + +
Sbjct: 641 EKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSN 700

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            K G   +L+AT V   GID+ D S+++  +        +H++ GR GR  +    I   
Sbjct: 701 LKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRI-GRTGRAGKSGVAITFL 759

Query: 597 HPPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEILGIK 637
               S   Y     +     +     +A     Q K G IL  K
Sbjct: 760 TKEDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTKK 803


>gi|71001454|ref|XP_755408.1| RNA helicase (Dbp) [Aspergillus fumigatus Af293]
 gi|66853046|gb|EAL93370.1| RNA helicase (Dbp), putative [Aspergillus fumigatus Af293]
 gi|159129480|gb|EDP54594.1| RNA helicase (Dbp), putative [Aspergillus fumigatus A1163]
          Length = 565

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/452 (18%), Positives = 151/452 (33%), Gaps = 73/452 (16%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-- 269
           P+  K F    P     +  E+           +   +   +P  VE        + +  
Sbjct: 79  PKFEKSFYKEHPDVAARSEREVEEF----RKKHEMTVQGRNVPRPVENFDEAGFPQYVLS 134

Query: 270 -----PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
                 F  PT  Q       L           +   + GSGKTL   +     + A   
Sbjct: 135 EVKAQGFERPTAIQSQGWPMALSGRDV------VGIAETGSGKTLTYCLPAIVHINAQPL 188

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +I+AP   LA Q    I K+ ++++I    + G +P+  + + L R     
Sbjct: 189 LAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSR----G 244

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLL 425
             + I T     D ++  +        L+L   D     G + +++    Q        +
Sbjct: 245 VEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCM 304

Query: 426 MTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLKVVL 479
            +AT     R L    L D     I           T    V+    + D++I+ L+ ++
Sbjct: 305 WSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIM 364

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
                   I            R   E    L +    +++I HG     +++ V++ FK 
Sbjct: 365 ENRSNKCLIFT-------GTKRIADEITRFLRQDGWPALSI-HGDKQQQERDWVLNEFKT 416

Query: 540 GTCKLLIATTVIEVGI------------------DVVDASIIIIENAEHFGLAQLHQLRG 581
           G   +++AT V   GI                  DV D + ++  +  +     +H++ G
Sbjct: 417 GKSPIMVATDVASRGIGLVAIFTNALFANLNLFKDVRDITHVLNYDYPNNSEDYIHRI-G 475

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           R GR     + I  +    SK +   +++L  
Sbjct: 476 RTGRAGAKGTAITFFTTENSKQARDLVTILTE 507


>gi|238761773|ref|ZP_04622747.1| DEAD/DEAH box helicase domain protein [Yersinia kristensenii ATCC
           33638]
 gi|238699887|gb|EEP92630.1| DEAD/DEAH box helicase domain protein [Yersinia kristensenii ATCC
           33638]
          Length = 658

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 146/413 (35%), Gaps = 45/413 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 22  LTDLGYEKPSPIQLECIPHLLNGRDV------LGMAQTGSGKTAAFGLPLLHNIDPTLKA 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  + +  ++++   + V  + G      R     R       +++
Sbjct: 76  PQVLVLAPTRELAIQVAQALTDFSKHMDGVNVVALYGG----QRYDVQLRALRQGPQVVV 131

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 132 GTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATM 191

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +    V    N+ + ++  L+    +   
Sbjct: 192 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALVRFLESEDFDAAI 251

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +               + +E   +L     +S A+ +G M+   +E  +D  K+G   +
Sbjct: 252 IFV----------RTKNATLEVAEALERSGYNSAAL-NGDMNQALREQTLDRLKDGRLDI 300

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 301 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 359

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
                 +K T     +   + +   E  +         +   +  +++ +LL 
Sbjct: 360 QNVERTMKLTIPEVQLP--NAELLGERRLAKFAAKVGQQLESSDLDMYRALLA 410


>gi|238028205|ref|YP_002912436.1| putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
 gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
          Length = 480

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 124/364 (34%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  KPTPIQAKAIPVVLSGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHSYAKHTALRSAVVFGGVDMNPQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATP 430
            T     D +Q           L+L   D     G    L+        A   LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKARQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    A    +  ++  I   D+    +K++     K   +
Sbjct: 203 SPEIKKLAATYLTNPQTIEVARSNATATNVTQIVYDIAEGDKQAAVVKLIRDRALKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R   L E        IHG  S  ++   +++FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARLLERDGVVATAIHGDRSQNERMQALEAFKRGEVEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFSAEDYVHRI-GRTGRAGASGDALSLCSPNERKQLADIE 373

Query: 609 SVLK 612
            ++K
Sbjct: 374 KLIK 377


>gi|170758858|ref|YP_001787102.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405847|gb|ACA54258.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 481

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 134/364 (36%), Gaps = 35/364 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  P++ Q+  I  IL+D         I++ + GSGKT    I +   +E     
Sbjct: 19  LGRLGYKNPSEVQKQVIPLILKDKD------IIVKSETGSGKTAAFSIPICEKIELEEKE 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +++ P   LA Q  E I       ++    I G  P   +++ L++    + H+++G
Sbjct: 73  PQVLVLTPTRELALQIKEEISSIALYRRLRCTAIFGKQPMNLQKRDLKQ----RVHLVVG 128

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIP 432
           T     D I+   L        +L   DE    G   Q   + ++     V ++ +  IP
Sbjct: 129 TPGRTLDHIERENLNLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVTMLFSATIP 188

Query: 433 R---TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L    + + +   I  +      I      +   D+     +++  E      I 
Sbjct: 189 EKIENLCKKYMNNPENININPENITTGTINQCYYEVEDKDKFFLLQRIIYKEVVDNSIIF 248

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
               E+ +       E    + +   ++I + HG M   D+   M  FK G  + L+ T 
Sbjct: 249 CNTRERVD-------EVLKHMKKKGFNAIGL-HGGMEQKDRLETMKKFKEGEFQFLVCTD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GI + + S ++     +   + +H++ GR GR  +    I        +       
Sbjct: 301 VAARGIHIENISHVVNYEMPYEKESYVHRI-GRTGRAGKEGVAITFIESNKVRFLKDIED 359

Query: 610 VLKN 613
            ++ 
Sbjct: 360 YIEK 363


>gi|168241214|ref|ZP_02666146.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194447332|ref|YP_002045697.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194405636|gb|ACF65855.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205339660|gb|EDZ26424.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 457

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 137/358 (38%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVTLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGVQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKETVSLDAL-HILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   ++PI+  I  ++ +   IE+     S  +K   +   + + +    
Sbjct: 187 WPEAIAAISGR-VQQQPIRIEIDTVDALP-AIEQQFFETSAHEKISLLQTLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNYELAWDPEVHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQ 361


>gi|167721135|ref|ZP_02404371.1| ATP-dependent DNA helicase RecG [Burkholderia pseudomallei DM98]
          Length = 210

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 12/210 (5%)

Query: 39  TRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGT 98
           TR IDL+ + P  + D      + E+         G +   +    + RR   + L D  
Sbjct: 2   TRDIDLVLHLPMRYEDETTLTPMRELLPGETAQTEGVVFD-NEIAYRPRRQLLVKLRDDD 60

Query: 99  G-EITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE 157
           G E+ L F       +K +   G+++ V G ++     + +VHP     +        + 
Sbjct: 61  GAELVLRFLNFYGSQVKQM-AVGQRLRVRGDVRGGFFGLEIVHPTVKTVDEDAPLPQALT 119

Query: 158 AVYSLPTGLSVDLFKKIIVEALSRLPVLPEWIEKDL----LQKKSFPSIAEAFNIIHNPR 213
            VY    G+S    +K I  AL+R P LPE +  ++    LQ    P +A+A  ++H+P 
Sbjct: 120 PVYPSTAGVSQAYLRKAIDNALARTP-LPELLPPEIARAYLQPLDVPPLADAVRMLHHPG 178

Query: 214 KAKD----FEWTSPARERLAYDELLAGQIA 239
              D     + T PA  R+ +DELLA Q++
Sbjct: 179 VGADETALIDGTHPAWTRIKFDELLAQQLS 208


>gi|154324248|ref|XP_001561438.1| hypothetical protein BC1G_00523 [Botryotinia fuckeliana B05.10]
 gi|160419159|sp|A6RJA2|PRP28_BOTFB RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|150842752|gb|EDN17945.1| hypothetical protein BC1G_00523 [Botryotinia fuckeliana B05.10]
          Length = 783

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 131/387 (33%), Gaps = 55/387 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----------EA 320
            P+  Q +AI   LQ          I     GSGKT   L+ +   +             
Sbjct: 402 EPSAVQRAAIPIALQ------ARDLIGVAVTGSGKTAAFLLPLLVYISELPPLNEFTKND 455

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+I+AP   LAQQ     KK+          I G      +   L       A III
Sbjct: 456 GPYAIILAPTRELAQQIEVEAKKFATPLGFTCVSIVGGHSLEEQSYNLRN----GAEIII 511

Query: 381 GTHALFQDSIQYYKLIL--------VIVDEQHRFGVQQRLKLT----------------Q 416
            T     D I+   L+L           D     G ++ +                   +
Sbjct: 512 ATPGRLVDCIERRVLVLGQCCYIIMDEADRMIDLGFEESVNKILDALPVSNEKPDTDDAE 571

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
            A A    L       +T++ T+     + KI +K   R  I T I  I    E +E+  
Sbjct: 572 DAQAMSRHLGGKDRYRQTMMYTATMPPAVEKIAKKYLRRPAIVT-IGNIGEAVETVEQRV 630

Query: 477 VVLSEGKKAYWICPQIEEKKES--------NFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
             ++   K      +I    E         N +   +      +H   +   +HG  +  
Sbjct: 631 EFVAGEDKRKKRLNEILASGEFAPPIIVFVNIKRNCDAVARDIKHMGFTSVTLHGSKTQE 690

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            +E+ + S ++G   +L+AT +   GIDV D S+++  N      +  H++ GR GR  +
Sbjct: 691 QREAALASVRSGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRI-GRTGRAGK 749

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTE 615
               I       S   Y    +L  + 
Sbjct: 750 SGVAITFLGNEDSDTMYDLKQMLTKSS 776


>gi|71906517|ref|YP_284104.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71846138|gb|AAZ45634.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 425

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 122/364 (33%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q+ AI  +   M+ ++ M        G+GKT    + +   + +G          
Sbjct: 23  TPTPIQQQAIPAV---MTGRDLM---ATAQTGTGKTAGFTLPILHRLCSGPNDRLTRVAK 76

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             + +++ P   LA Q  E ++ Y ++  I    + G +    +   L R       I++
Sbjct: 77  TPRVLVLTPTRELAIQVEESVRTYGKHLPITSLAVFGGVGINPQIANLRR----GVDILV 132

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT- 429
            T     D +Q   +        +L   D     G     R  +         L+ +AT 
Sbjct: 133 ATPGRLLDHVQQRTVDLSKIEIFVLDEADRMLDMGFIRDIRKIIALLPKQRQNLMFSATF 192

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  R L    L +     +  +    + +   +I  NR  +      +  + G     +
Sbjct: 193 SPDIRELAAGLLHNPASVDVAARNTAAETVTQRVIETNRDQKKELLCHLFETRGWHQVLV 252

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +         +   +  +   E      A IHG  S   +   +  FK G    L+AT
Sbjct: 253 FART--------KHGADALSKTLEKAGIKSAAIHGDKSQGARTRALTEFKEGKLVALVAT 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            +   GID+     +I     +     +H++ GR GR       I L       +     
Sbjct: 305 DIAARGIDIDALPYVINYELPNVAEDYVHRI-GRTGRAGMEGEAISLVSHDERGSLRDIE 363

Query: 609 SVLK 612
            ++K
Sbjct: 364 RLIK 367


>gi|52424550|ref|YP_087687.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306602|gb|AAU37102.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 613

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 132/360 (36%), Gaps = 39/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
           +P+  Q++ I  +L           +     GSGKT    + + A +   E   Q ++MA
Sbjct: 28  TPSPIQQACIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLAQIDIEEKHPQMLVMA 81

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E  + +T+N   + +  + G      R     R     A +++GT     
Sbjct: 82  PTRELAIQVAEACELFTKNAKGVHIATLYGG----QRYDIQLRALRQGAQVVVGTPGRIL 137

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D I+   L        +L   DE  R G    ++                   +T + ++
Sbjct: 138 DHIRRGTLNLSELKFIVLDEADEMLRMGFIDDVETVMAELPAQ---------HQTALFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I +IT++     P +  I    R +  I +    +   +K   +   +E +    
Sbjct: 189 TMPEPIRRITKRFMT-DPQEVKIQSTQRTNPDIAQSCWYVRGYRKNEALLRFLEVEDFDG 247

Query: 500 FRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                           L E      A ++G M+   +E  +D  +NG+  +L+AT V   
Sbjct: 248 AIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILVATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV   S+++  +      + +H++ GR GR     S IL   P   +       ++K 
Sbjct: 308 GLDVERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGSAILFVEPRERRLLSNIERLMKK 366


>gi|326491859|dbj|BAJ98154.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 786

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 127/374 (33%), Gaps = 48/374 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
            PT  Q  +                I   + GSGKTL   + + A + +       G + 
Sbjct: 389 KPTPIQAQSWPIARSGRD------IIAIAETGSGKTLSFGLPILAQILSKQNSTSGGKRT 442

Query: 325 ---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++AP   LA Q  +  +       +    + G  P+    KAL+        ++I 
Sbjct: 443 PLMLVLAPTRELAMQTADVCEAAGATCGLKTLCVYGGSPREGNVKALKA----GVDLLIA 498

Query: 382 THALFQDSIQYY--------KLILVIVDEQHRFGVQ--QRLKLTQKATAPHVLLMTATPI 431
           T     D +Q           L+L   D     G +   R  +         L+ +AT  
Sbjct: 499 TPGRLIDLLQEGVAVLDKVQHLVLDEADRMLDMGFEPAIRQIIAAVPKTRQTLMFSATWP 558

Query: 432 P--RTLVLTSLGDIDISKITEK------PAGRKPI--KTVIIPINRIDEVIERLKVVLSE 481
              ++L    L +     I  K      P   + +     ++     +  ++ L   L +
Sbjct: 559 LSIQSLANEFLREPAKVTIGVKQEQSDGPTANRRVTQIVEVMTYRDKEHRLQDLLHKLHK 618

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            +K   +   + +K+        ER           +  IHG  S   +   ++SF++G 
Sbjct: 619 SRKNRILVFALYKKEA-------ERIEQTLRRKGWKVQGIHGDKSQALRSKAIESFRSGE 671

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             LL+AT V   G+D+ D   +I           +H++ GR GR  +  +    +     
Sbjct: 672 EPLLVATDVAARGLDIPDVEYVINYTFPLTIEDYVHRI-GRTGRAGKTGTAYTFFTDEDK 730

Query: 602 KNSYTRLSVLKNTE 615
            ++     VL+   
Sbjct: 731 THAGELQQVLREAN 744


>gi|260545280|ref|ZP_05821021.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260754789|ref|ZP_05867137.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260758012|ref|ZP_05870360.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260761835|ref|ZP_05874178.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883806|ref|ZP_05895420.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|261214040|ref|ZP_05928321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|260096687|gb|EEW80562.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260668330|gb|EEX55270.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260672267|gb|EEX59088.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260674897|gb|EEX61718.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260873334|gb|EEX80403.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|260915647|gb|EEX82508.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
          Length = 458

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 128/347 (36%), Gaps = 39/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            P   Q  AI   L+          +     GSGKT    + +   +            +
Sbjct: 36  EPKPIQTQAIPSQLEGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTAR 89

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  + I+  +++  I   ++ G + +  + K +         ++I T 
Sbjct: 90  ALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATP 145

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPR 433
               D +        Q   L+L   D     G    +K   KAT       L +AT    
Sbjct: 146 GRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKE 205

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L      D  ++   P G     I  V+ P+   ++      ++     ++  +  +
Sbjct: 206 IASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTR 265

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +   ++  R          E     +A IHG  S   ++  ++ F++GT ++L+AT + 
Sbjct: 266 TKHGADAVVRH--------LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIA 317

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             GIDV   S ++  +        +H++ GR GR     + I LY P
Sbjct: 318 ARGIDVPGISHVVNYDLPDEPETYVHRI-GRTGRNGASGASITLYDP 363


>gi|209964196|ref|YP_002297111.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
 gi|209957662|gb|ACI98298.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
          Length = 528

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 131/373 (35%), Gaps = 47/373 (12%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
             + F+ PT  Q+ A+   L           +   + G+GKT   ++     +       
Sbjct: 24  EELGFTTPTPIQQQALPAALTGRDV------VASANTGTGKTAAFVLPSLQRIATTARAE 77

Query: 321 ---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
              G + +++ P   LA Q  E ++  ++  +I    I G MP   + + L R    +  
Sbjct: 78  AAWGPRVLVLTPTRELASQVLESVRNLSKFGRIQTGTILGGMPYRQQLEMLRR----RVD 133

Query: 378 IIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQ--KATAPHVLLMT 427
           +I+ T     D ++  +L L  V        D     G ++ ++            LL T
Sbjct: 134 LIVATPGRLMDHMERGRLDLSGVEVLVLDEADRMLDMGFREAVEFIAAACPAERQTLLFT 193

Query: 428 ATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL--SEGK 483
           AT       L  T   D     +  K      ++   +  + ++     L+ +L   E  
Sbjct: 194 ATLDRTAERLAQTLTRDPVRIDVAGKAVVTAQVEQRWLRADGLEHKHRLLETLLGGEEFG 253

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           K                +   +R              +HG M   D+  V+   ++G   
Sbjct: 254 KGIVFIAT---------KLDADRLADTLSEKGHKAMPLHGDMQQRDRNRVVQWLRDGRIN 304

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +++AT V   GID+ D + +I  +        +H++ GR GR         L+    ++ 
Sbjct: 305 VIVATDVAARGIDIADLTHVINFDLPKQAEDYVHRI-GRTGRAGASGVSYSLF----TRM 359

Query: 604 SYTRLSVLKNTED 616
            + ++  ++   +
Sbjct: 360 EWRQVRAIEAYTN 372


>gi|254228728|ref|ZP_04922151.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262396550|ref|YP_003288403.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151938675|gb|EDN57510.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262340144|gb|ACY53938.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 443

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 128/374 (34%), Gaps = 27/374 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
            PT  Q+ AI   +           +     GSGKTL  ++ M               +A
Sbjct: 23  KPTDIQKQAIPVAIAGKD------LLASSKTGSGKTLAFVLPMLHKSLKTKSFSAKDPRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI+AP   LA+Q Y  ++           +I G      + KAL R        I+ T  
Sbjct: 77  VILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRY----PKFIVATPG 132

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D +++  L L  ++        + L L        +         +TL+ ++  D  
Sbjct: 133 RLADHLEHRSLYLEGLETLILDEADRMLDLGFAPELRRIHKAAKHRRRQTLMFSATLDHA 192

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---- 500
                       P +  I   N   + I +   +         I  ++  + E       
Sbjct: 193 DVNDIAAEMLNSPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRVLSEAEYRQVIIF 252

Query: 501 ---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              R   ER  +           + G ++   + ++M  F+    K+L+ T V   G+D+
Sbjct: 253 TATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDI 312

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              + +I  +        +H++ GR GR       I L  P    +S+ R+      +  
Sbjct: 313 ATVTHVINFDMPKHTEEYVHRV-GRTGRAGNKGDAISLVGPK-DWDSFKRVEAYLQQDLE 370

Query: 618 FLIAEEDLKQRKEG 631
           F + E DLK + +G
Sbjct: 371 FSVFE-DLKGKFKG 383


>gi|332534743|ref|ZP_08410571.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035830|gb|EGI72314.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 408

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 131/380 (34%), Gaps = 40/380 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ K+   I +    +PT  Q+ AI + LQ          +     G+GKT   LI  
Sbjct: 6   FDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRD------ILASAPTGTGKTAAFLIPA 59

Query: 315 AAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              +    +        ++M P   LA Q +E  +   + T + + ++TG +     ++ 
Sbjct: 60  IQYLLDFPRRDPGFARVLVMTPTRELAYQIHEQCELLAKRTHLKIGVVTGGINYGTHKEI 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKAT 419
            E+       I+I T     + ++           LI+   D     G ++ +       
Sbjct: 120 FEKNN----DILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEA 175

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
                          L   +L    + +  EK      +           ++ + + +  
Sbjct: 176 KNRRQCF--------LFSATLEGDSVERFAEKTLNDPALLEAESSRKEKAKIHQWVHLAD 227

Query: 480 SEGKKAYWICPQI---EEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESV 533
               K   +   +   +  K   F    ER  +L    T+     A + G M    +   
Sbjct: 228 DYHHKLELLVNTLNGPDVTKAIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKA 287

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M++F +G  ++LIAT V   GIDV D S +I  +        +H++ GR GR  +    I
Sbjct: 288 MENFHSGKTRILIATDVAARGIDVSDISHVINFDMPRTADVYVHRI-GRTGRAGKKGIAI 346

Query: 594 LLYHPPLSKNSYTRLSVLKN 613
            L         Y     ++ 
Sbjct: 347 SLVEAHDIGILYKVERYVEQ 366


>gi|306840535|ref|ZP_07473294.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2]
 gi|306289550|gb|EFM60768.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2]
          Length = 549

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 142/393 (36%), Gaps = 40/393 (10%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R   D   A  +  + + K+        + + G + + +       P   Q  AI   L
Sbjct: 78  RRFKADRECAVPLKEIELTKENTGG-FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQL 136

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
           +          +     GSGKT    + +   +            +A+I+AP   LA Q 
Sbjct: 137 EGHD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQI 190

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+  +++  I   ++ G + +  + K +         ++I T     D +       
Sbjct: 191 EQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATPGRLTDLMRDGLVDL 246

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISK 447
            Q   L+L   D     G    +K   KAT       L +AT       L      D  +
Sbjct: 247 SQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVR 306

Query: 448 ITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P G     I  V+ P+   ++      ++     ++  +  + +   ++  R    
Sbjct: 307 VEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGADAVVRH--- 363

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 E     +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV   S ++ 
Sbjct: 364 -----LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 418

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +        +H++ GR GR     + I LY P
Sbjct: 419 YDLPDEPETYVHRI-GRTGRNGASGASITLYDP 450


>gi|294056345|ref|YP_003550003.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615678|gb|ADE55833.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 465

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 123/361 (34%), Gaps = 31/361 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +P+  Q  AI  +L+          +     G+GKT    + +   +          G +
Sbjct: 26  TPSPIQARAIPVLLEG------GDLLACAQTGTGKTAAFALPLLHGIAERPRKPFRRGVR 79

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA Q  E  + Y ++ +    ++ G + +  + K L +       +++   
Sbjct: 80  HLVLTPTRELAVQVAENFELYGKHIKFRSMMVYGGVSEKPQIKTLFQ----GVDVLVACP 135

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    + L  V E        R+           +        +TL+ ++    
Sbjct: 136 GRLIDLMDQGHVDLSQV-ETFILDEADRMLDMGFIRDIRKIAAKLPKKRQTLLFSATMAP 194

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--- 500
           +I+K+       +P +  I P     + +++    + +  K   +   +  + +      
Sbjct: 195 EITKLGH-AMLHQPAEIRIAPQGTTADKVDQSLCFIGKKAKPKLLLEMLHRRFDEQPNEL 253

Query: 501 -------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   +               IHG  S   +E  ++ ++ G   +L+AT V   
Sbjct: 254 SLVFTRTKHGAKNLAKKLNGEGLKADAIHGNKSQSAREKTLERYRRGEIDILVATDVAAR 313

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GIDV + +++I  +      A +H++ GR  R       +                ++K 
Sbjct: 314 GIDVKNITLVINFDLPMEADAYVHRI-GRTARAGASGHAVSFCSEEEVALLRQIERLIKK 372

Query: 614 T 614
           T
Sbjct: 373 T 373


>gi|255534879|ref|YP_003095250.1| Cold-shock DEAD-box protein A [Flavobacteriaceae bacterium 3519-10]
 gi|255341075|gb|ACU07188.1| Cold-shock DEAD-box protein A [Flavobacteriaceae bacterium 3519-10]
          Length = 571

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 131/368 (35%), Gaps = 43/368 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           +  + F  PT+ Q+  I  I  D+        I     G+GKT    + +   ++ G   
Sbjct: 17  IGELGFESPTEIQKQTIPFISTDI-----RDLIALAQTGTGKTAAFSLPILDMIDDGSRK 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++ P   L  Q  + IK Y++    I    + G      + ++L      +  II+
Sbjct: 72  IQFLVLCPTRELCLQITKDIKNYSKYMNNIKTTAVYGGSSITDQIRSLRD----KPQIIV 127

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D I    L        +L   DE    G +  L   L +     H  L +AT 
Sbjct: 128 GTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILRETPETKHTYLFSAT- 186

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
                      + ++ +I++      P +  +  IN + + I+    V+    K   +  
Sbjct: 187 ----------MNKEVERISKSYLT-APHRISVGSINEVKKNIKHEFYVVGYRHKKEALKR 235

Query: 491 QIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            I+             R   +           +   +HG +S   +++VM  F+     +
Sbjct: 236 LIDANPNQYSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDI 295

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT V   G+DV   + +I  +        +H+  GR GR  +    + L  P  S+  
Sbjct: 296 LVATDVAARGLDVDSLTHVIHYSLPDDPEVFVHR-SGRTGRAGKDGISMSLIKPEESRKL 354

Query: 605 YTRLSVLK 612
                  K
Sbjct: 355 KQIKMSTK 362


>gi|224088798|ref|XP_002308545.1| predicted protein [Populus trichocarpa]
 gi|222854521|gb|EEE92068.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYDIVECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 172 MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ +  +E L          Y      +   
Sbjct: 232 RKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRD 386


>gi|115398415|ref|XP_001214799.1| hypothetical protein ATEG_05621 [Aspergillus terreus NIH2624]
 gi|121737771|sp|Q0CL13|DBP3_ASPTN RecName: Full=ATP-dependent RNA helicase dbp3
 gi|114192990|gb|EAU34690.1| hypothetical protein ATEG_05621 [Aspergillus terreus NIH2624]
          Length = 493

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 89/420 (21%), Positives = 157/420 (37%), Gaps = 57/420 (13%)

Query: 251 IGIPINVEGKIAQKILRNIP-F-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
             I  +   +    +   +  F SPT  Q +    +            I   + GSGKTL
Sbjct: 77  PIISFSHLPECNSNLYEQLNSFKSPTSIQSATWPLLFGGRDV------IGIAETGSGKTL 130

Query: 309 VALIAMAAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
              +     +E             AVI++P   LA Q ++ ++K+       V  I G +
Sbjct: 131 AFGLPCLKKIEDSKKKKSKPYQPMAVIISPTRELAMQIHDQLQKFAGPVGAKVACIFGGV 190

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQR 411
            +  +R+ L+      A+I++ T    +D     S+   K+  +++DE  R    G +Q 
Sbjct: 191 RKDEQREVLK-----TANIVVATPGRLKDLQNDGSVDLGKVRYLVLDEADRMLDKGFEQD 245

Query: 412 LKLTQKATA---PHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGR-------KPIK 459
           +K   +         ++ TAT  P  R L  T +       I   P+         K + 
Sbjct: 246 IKDIIQPMPVSKRQTVMFTATWPPVVRELASTFMSSPVTVTIGGDPSADPRANTRIKQVV 305

Query: 460 TVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIA 519
            V+ P  +   +++ LK      +K    C          ++    R     +     +A
Sbjct: 306 EVVKPHEKEGRLVQLLKQHQRGAEKVLAFCL---------YKKEATRIERFLQSRGFKVA 356

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            IHG +S  ++   +D+FK G   +L+AT V   G+D+    ++I           +H++
Sbjct: 357 GIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPAVKLVINVTFPLTVEDYVHRI 416

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
            GR GR       I L+       S   ++VLK    G  + E   +  K G  +  KQ 
Sbjct: 417 -GRTGRAGAEGHAITLFTETDKAQSGALINVLKA--AGQEVPE---ELLKFGGTVKKKQH 470


>gi|329116940|ref|ZP_08245657.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis
           NCFD 2020]
 gi|326907345|gb|EGE54259.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis
           NCFD 2020]
          Length = 537

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/341 (19%), Positives = 127/341 (37%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     V       QA+++AP 
Sbjct: 25  SPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKVRTDENIIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   L L  V        DE    G        +++       LL +AT P P + + + 
Sbjct: 135 KRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPANRQTLLFSATMPAPIKQIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  +I  K      ++   + +   ++     +++  +  +   +  +       
Sbjct: 195 FMKEPEHVQIKNKELTNVNVEQFYVRVKEQEKFDTMTRLMDVDQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FK     +L+AT V   G+D+ 
Sbjct: 249 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           D + +   +      + +H++ GR GR  +    I    P 
Sbjct: 307 DVTHVYNYDITQDPESYVHRI-GRTGRAGKSGESITFVSPN 346


>gi|295133956|ref|YP_003584632.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Zunongwangia
           profunda SM-A87]
 gi|294981971|gb|ADF52436.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Zunongwangia
           profunda SM-A87]
          Length = 598

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 140/368 (38%), Gaps = 35/368 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           + ++ F  P++ QE  I  +L    ++  M+ + Q   G+GKT      +   ++     
Sbjct: 17  IEDMGFESPSEVQEKTIPILL---DEETDMVALAQ--TGTGKTAAFGFPLIQKIDPKSKH 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I++P   L  Q    +K Y++    +    + G      + K +ER     A II+
Sbjct: 72  TQALILSPTRELCLQITNELKNYSKYEPSLHPVAVYGGASITDQAKQIER----GAQIIV 127

Query: 381 GTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
            T    QD I+            +L   DE    G  + +   L+      +  L +AT 
Sbjct: 128 ATPGRMQDMIRRKLTDISKIEYCVLDEADEMLNMGFYEDITAILSHTPKEKNTWLFSATM 187

Query: 431 IPR--TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
                T+    + +     +  K  G   +      +N  D      ++  +       I
Sbjct: 188 PKEVATIAKKFMRNPVEVTVGSKNMGATNVSHEFYLVNARDRYAALKRLADANPDIFSVI 247

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +       R   +    L E    S A +HG +S   ++ VM SF+    ++L+AT
Sbjct: 248 FCRTK-------RDTQKVAERLIEDGY-SAAALHGDLSQNQRDLVMKSFRTRQIQMLVAT 299

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV D + +I            H+  GR GR  ++ + +++      +   +  
Sbjct: 300 DVAARGIDVDDITHVINYQLPDEVETYTHR-SGRTGRAGKLGTSMVIVSKSELRKIKSIE 358

Query: 609 SVLKNTED 616
            ++K + D
Sbjct: 359 RIIKQSFD 366


>gi|256821317|ref|YP_003145280.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256794856|gb|ACV25512.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 434

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 129/360 (35%), Gaps = 36/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q+  I  IL           +     G+GKT    + +   +  G +        
Sbjct: 23  TPSPIQQKVIPLILNGQDV------MAAAQTGTGKTAGFSLPILQRLSEGKRPSANSARC 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA+Q ++ ++KY  N  +   ++ G +    +   L R       +++ T  
Sbjct: 77  LILTPTRELAEQVHQSVQKYAANLHLNSIVVYGGVKINPQMLKLRR----GTDVLVATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L  +++DE  R      L   +       ++       +TL+ ++
Sbjct: 133 RLLDLMEQNAVRFNDLEFLVLDEADRMLDMGFLPSIK------RIIGKLPKKRQTLLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I  I+++     P        N     +++    + + +K   +   I   +   
Sbjct: 187 TFSESIKAISQQFLT-NPSLVETEQTNTTAATVKQWIHPVDKKQKPALLSYLIGHHRWDQ 245

Query: 500 ---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F       N L             IHG  S   +   +  FK+G   +L+AT V   
Sbjct: 246 LLVFVRTRRGANKLSVDLEKRGIKATAIHGGKSQGARNRALSEFKSGKVTVLVATDVAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+    ++I  +  +     +H++ GR GR  E  + I L       +      +++ 
Sbjct: 306 GLDIEQMPLVINYDLPNVAEDYVHRI-GRTGRAGEKGTAISLVSADEVDDLRAIQDLIRK 364


>gi|225442221|ref|XP_002277703.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 413

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 127/343 (37%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYSLVQCQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVRVHACVGGTSVREDQRILQT----GVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L +T
Sbjct: 172 MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ +  +E L          Y      +   
Sbjct: 232 RKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRD 386


>gi|94267131|ref|ZP_01290765.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93452155|gb|EAT02824.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 509

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/412 (19%), Positives = 160/412 (38%), Gaps = 43/412 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +PT  Q +AI  +L           + Q   G+GKT    + + + ++      Q +++A
Sbjct: 29  TPTPIQAAAIGPLLAGRD------LLGQAQTGTGKTAAFALPLLSRLDTSRKYPQLLVLA 82

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+ Y+++     V  + G    A + +AL+R        ++GT    Q
Sbjct: 83  PTRELALQVADEIQAYSRHLPGFQVLPLYGGQNMAQQLRALQR----GVQAVVGTPGRIQ 138

Query: 388 DSIQYYKLILV--------IVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTL-- 435
           D ++   L L           DE  + G    +   L Q      V L +AT     +  
Sbjct: 139 DHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQRQVALFSATMTQEIMRI 198

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D +  ++  +    + I      +  + ++    +++ +E  +A  I  + +  
Sbjct: 199 ARRHLKDPEEIRLKTRTTTVETISQHYWLVQGLQKLDALTRILEAEAVEAMLIFVRTK-- 256

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                 + VE    L     +S A+ +G M+   +E  ++  K+GT  +++AT V   G+
Sbjct: 257 -----VATVELAEKLAARGFASAAL-NGDMTQGLREKTVEQLKDGTLDIVVATDVAARGL 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S ++  +  +   + +H++ GR GR       I+   P   +  +      +   
Sbjct: 311 DVQRISHVVNYDIPYDTESYVHRI-GRTGRAGRQGQAIIFVAPREMRMLHAIEKATRQ-- 367

Query: 616 DGFLIAEEDLKQRKEGE---ILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
               IA   L  R+E     I   K+  +        E  + L+  A  +A+
Sbjct: 368 ---QIARLQLPSRREVNQRRIDQFKEKIIAASRQPGLEFFEELIAQATAEAE 416


>gi|84778881|dbj|BAE73658.1| inducible ATP-independent RNA helicase [Sodalis glossinidius str.
           'morsitans']
          Length = 627

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/377 (19%), Positives = 139/377 (36%), Gaps = 41/377 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L ++ +  P+  Q + I  +L           +     GSGKT    + +   ++   A 
Sbjct: 26  LTDLGYEKPSPIQSACIPHLLAGRDV------LGMAQTGSGKTAAFSLPLLHNIKPELAA 79

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    + ++   + V  + G      R     R       +++
Sbjct: 80  PQVLVLAPTRELAVQVGEACADFAKHMKGVNVVALYGG----QRYDVQLRALRQGPQVVV 135

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   L Q        L +AT 
Sbjct: 136 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENILAQVPAEHQTALFSATM 195

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + +    +I      R  I      +  + +    ++ + +E   A  I
Sbjct: 196 PEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAII 255

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L     +S A+ +G M+   +E  +D  K+G   +LIAT
Sbjct: 256 FVRTKN-------ATLEVAEALELSGYNSAAL-NGDMNQALREQTLDRLKDGRLDILIAT 307

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 308 DVAARGLDVDRISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIE 366

Query: 609 SVLKNTEDGFLIAEEDL 625
            ++K T     I E DL
Sbjct: 367 RIMKLT-----IPEVDL 378


>gi|13959325|sp|Q9JIK5|DDX21_MOUSE RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
           protein 21; AltName: Full=Gu-alpha; AltName:
           Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
           RNA helicase II; AltName: Full=RH II/Gu
 gi|16975510|gb|AAD43959.3|AF159131_1 nucleolar RNA helicase II/Gu [Mus musculus]
          Length = 851

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 143/423 (33%), Gaps = 72/423 (17%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------GQAV 325
             Q      +            I Q   G+GKT    I +   ++ G          Q +
Sbjct: 283 PIQAKTFHHVYSGKD------LIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVL 336

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  +     T+  ++ V    G  P   +   +ER+  G   I++GT   
Sbjct: 337 VLAPTRELANQVSKDFSDITK--KLSVACFYGGTPYGGQ---IERMRSG-IDILVGTPGR 390

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +D +Q  KL        +L  VD+    G   +++              +   P+TL+ 
Sbjct: 391 IKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKD----SEDNPQTLLF 446

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEK 495
           ++     +  + +K       +  +I        I  E L +     ++A  I   I   
Sbjct: 447 SATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVY 506

Query: 496 KESNFR-----SVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                R        +    L ++         +HG +    +E  +  F+NG   +L+AT
Sbjct: 507 SGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVAT 566

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +  +++         + +H+  GR GR      CI  Y            
Sbjct: 567 NVAARGLDIPEVDLVVQSCPPKDVESYIHR-SGRTGRAGRTGVCICFY------------ 613

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
                 ++ + +A+             ++Q    KF          +++ + KDA  +L 
Sbjct: 614 ----QNKEEYQLAQ-------------VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLD 656

Query: 669 QDP 671
             P
Sbjct: 657 SVP 659


>gi|16272194|ref|NP_438403.1| ATP-dependent RNA helicase [Haemophilus influenzae Rd KW20]
 gi|260580884|ref|ZP_05848709.1| ATP-dependent RNA helicase [Haemophilus influenzae RdAW]
 gi|1169261|sp|P44586|DEAD_HAEIN RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|1573195|gb|AAC21900.1| ATP-dependent RNA helicase (deaD) [Haemophilus influenzae Rd KW20]
 gi|260092507|gb|EEW76445.1| ATP-dependent RNA helicase [Haemophilus influenzae RdAW]
          Length = 613

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 132/364 (36%), Gaps = 36/364 (9%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+S I  +L           +     GSGKT    + + A +   E   
Sbjct: 21  SDLGFETPSPIQQSCIPHLLNG------NDVLGMAQTGSGKTAAFALPLLAQIDPSEKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  + + +      +  + G      R     R     A +++G
Sbjct: 75  QMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGG----QRYDIQLRALKQGAQVVVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 131 TPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMP 190

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I      ++ + +    L+ +  E   A  I 
Sbjct: 191 EPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +NG+  +++AT 
Sbjct: 251 ARTKTGTLD--------ITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S+++  +      + +H++ GR GR       +L   P   +       
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEH 361

Query: 610 VLKN 613
           ++K 
Sbjct: 362 LMKK 365


>gi|126440586|ref|YP_001057787.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           668]
 gi|126220079|gb|ABN83585.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           668]
          Length = 485

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 130/369 (35%), Gaps = 42/369 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
             + ++ PT  Q  AI  +L           +     G+GKT    + +   + A     
Sbjct: 17  NELGYTQPTPIQAQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHAFYAEN 70

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             I++ T     D +Q           L+L   D     G    +K  L +       LL
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLL 186

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L  + L    + ++  +    + I   I P++R  +      ++     
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNW 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  +         +    R          S   IHG  S   +   +  FK+ T +
Sbjct: 247 FQVLVFTRT--------KHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQ 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT +   GID+     ++  +  +     +H++ GR GR       + L      + 
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKQL 357

Query: 604 SYTRLSVLK 612
                 ++K
Sbjct: 358 LRDIERLIK 366


>gi|331092062|ref|ZP_08340893.1| hypothetical protein HMPREF9477_01536 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402263|gb|EGG81834.1| hypothetical protein HMPREF9477_01536 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 528

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 129/372 (34%), Gaps = 40/372 (10%)

Query: 260 KIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
              QK ++ + F   +  Q  AI  IL+          I Q   G+GKT    I +   V
Sbjct: 13  PEIQKAVKYMGFEEASPIQAKAIPVILEGKD------IIGQAQTGTGKTAAFGIPLLQKV 66

Query: 319 EAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHG 374
                  Q +++ P   LA Q  + I+   +    I V  I G      + ++L      
Sbjct: 67  NPKNKKLQGIVLCPTRELAIQVADEIRNLAKYMHGIKVLPIYGGQEIVKQIRSL----KN 122

Query: 375 QAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
              IIIGT     D ++         + ++L   DE    G ++ ++   +         
Sbjct: 123 GTQIIIGTPGRVMDHMRRKTIKMEQVHTVVLDEADEMLNMGFREDIETILEGVPEE---- 178

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +T++ ++     I +IT+K   +  +  V      +   IE+    +    K  
Sbjct: 179 -----RQTVLFSATMPKAIMEITKKFQKKAEVIKVTKKELTVPN-IEQFYYEVKPKNKEE 232

Query: 487 WICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +   ++           N +  V+   +         A +HG M  + ++ VM  F++G
Sbjct: 233 VLARLLDIYTPKLSVVFCNTKKQVDLLVTSLLGRGYFAAGLHGDMKQVQRDRVMQGFRSG 292

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   GIDV +   +   +        +H++ GR GR   +           
Sbjct: 293 KTDILVATDVAARGIDVDEVEAVFNYDLPQDDEYYVHRI-GRTGRAGRVGRSFSFVSGKE 351

Query: 601 SKNSYTRLSVLK 612
                      K
Sbjct: 352 VYKLKEIQRYCK 363


>gi|317488296|ref|ZP_07946860.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|316912603|gb|EFV34148.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
          Length = 516

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/388 (18%), Positives = 133/388 (34%), Gaps = 36/388 (9%)

Query: 242 LMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGD 301
             RKQ + +    + +  +  + + R    +PT  QE AI   L+          I    
Sbjct: 4   RHRKQRQMKQFNELGLSDQALEAVARLGYEAPTPVQEQAIPLALEGRD------LIAAAK 57

Query: 302 VGSGKTLVALIAMAAAV--EAGGQA---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIIT 356
            G+GKT    +     +    GGQ    +++ P   LAQQ  E       +T   +  + 
Sbjct: 58  TGTGKTAAFSLPSLDRLGHAKGGQGPLMLVVTPTRELAQQIGEVCTAIAASTHHRILTVV 117

Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV 408
           G +    +   L+        I+I T     D ++           L+L   D     G 
Sbjct: 118 GGLSYTPQINKLKH----GVDILIATPGRLVDLMEQGAVRLGDVEVLVLDEADRMLDMGF 173

Query: 409 Q--QRLKLTQKATAPHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
               +  +     +   LL +AT     +  V   L D    +I  K      ++  I+ 
Sbjct: 174 WPAMKKIIGATPASRQTLLFSATIDASIKNSVGKLLHDPAFVEIAHKGETADTVEQYIVH 233

Query: 465 INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGR 524
           + +  +      V+  +G     +  +   + +S  R          +    +   IH  
Sbjct: 234 VAQTLKPALLKAVLAEKGSDRVIVFARTRSRADSTCRR--------LKRAGYTAEAIHSD 285

Query: 525 MSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVG 584
            S   +   +D+F  G   +L+AT V+  GIDV +   ++  +        +H++ GR G
Sbjct: 286 RSQAQRRRALDNFAAGKTGVLVATDVLARGIDVEEVDYVVNYDLPTQPEDYVHRI-GRTG 344

Query: 585 RGEEISSCILLYHPPLSKNSYTRLSVLK 612
           R       +    P  +        ++K
Sbjct: 345 RAGAAGFAVSFVSPETADALRDIEKLIK 372


>gi|195952677|ref|YP_002120967.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932289|gb|ACG56989.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 364

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 128/349 (36%), Gaps = 22/349 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            PT  Q  AI   L+          + Q   G+GKT    I +   ++ G    +A+++ 
Sbjct: 22  EPTPIQRDAIPLALEGYD------ILGQAATGTGKTGAFAIPIVEKLQKGKPDVKALVLT 75

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I   T+  ++   +  G          L+        I+IGT    +D
Sbjct: 76  PTRELAIQVKEQIYMLTKYKRLSSYVFYGGTSVKQNLDILQNK---NVDILIGTPGRIKD 132

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT-LVLTSLGDIDISK 447
            I    L L  V+        Q L +       +++  +  P  RT  + ++     I  
Sbjct: 133 LIDRKALNLSKVEYLVLDEFDQMLDMGFIEDIEYII--SFLPKERTTYMFSATVPSRIEL 190

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------R 501
           + ++          +  +     + E++  + S G+K + +   I+             +
Sbjct: 191 LAKRFLKSDFKFVKVQSVELKPNIEEKMIKLSSPGEKIHELMHIIDTHPMEKMLIFVKTK 250

Query: 502 SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
              +    L          +HG ++   +E  + +FK+G   +LIAT V   G+D+ D  
Sbjct: 251 KDAKDLFFLLTKKGIRAQALHGDLTQRQREKALSAFKSGAVSILIATDVAARGLDIKDVG 310

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           ++I  N        +H++ GR GR  +      L  P  SK  +    +
Sbjct: 311 VVINYNIPEDPELYIHRI-GRTGRIGKSGKAFSLICPEDSKALWRIKKL 358


>gi|73540622|ref|YP_295142.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72118035|gb|AAZ60298.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 632

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/389 (19%), Positives = 138/389 (35%), Gaps = 47/389 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------------- 318
           PT  Q  AI   L           ++    GSGKT   ++     +              
Sbjct: 74  PTPVQAQAIPAFLAGRD------LLVSSQTGSGKTAAFMLPAIQRISEKPATNRPTEPAK 127

Query: 319 -EAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIV-EIITGNMPQAHRRKA 367
              G +          +++ P   LA Q  E   KY +N + IV   I G MP   +  A
Sbjct: 128 RMKGKRPRPSPAQPSLLVLTPTRELALQVTEAAAKYGRNLRRIVCASILGGMPYPKQLAA 187

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L ++      I++ T     D I   ++ L  +D    F    R+     A     ++  
Sbjct: 188 LSKM----PDILVATPGRLLDHISAGRIDLSALD-MLVFDEADRMLDMGFADDIDAIVDA 242

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                +TL+ ++  D  I+++  +   + P +  I         IE+      +      
Sbjct: 243 TPASRQTLMFSATLDARIAQLASRQL-KDPQRIEIAAARADQSHIEQRLHFTDDMSHKER 301

Query: 488 ICPQIEE----KKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNG 540
           +   +      K+   F +     +SL E  +    +   +HG M+   +   + + + G
Sbjct: 302 LLDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFAAGALHGDMTQGARNRTLTALRRG 361

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+AT V   GIDV D + ++  +        +H++ GR GR       I L +   
Sbjct: 362 NLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRI-GRTGRAGRSGVAINLVNHND 420

Query: 601 SKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
           +           N  D  +I  E L+ R+
Sbjct: 421 TFQWKRIERFTNNRIDASVI--EGLEPRR 447


>gi|74211590|dbj|BAE26522.1| unnamed protein product [Mus musculus]
          Length = 851

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 143/423 (33%), Gaps = 72/423 (17%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------GQAV 325
             Q      +            I Q   G+GKT    I +   ++ G          Q +
Sbjct: 283 PIQAKTFHHVYSGKD------LIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVL 336

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  +     T+  ++ V    G  P   +   +ER+  G   I++GT   
Sbjct: 337 VLAPTRELANQVSKDFSDITK--KLSVACFYGGTPYGGQ---IERMRSG-IDILVGTPGR 390

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +D +Q  KL        +L  VD+    G   +++              +   P+TL+ 
Sbjct: 391 IKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKD----SEDNPQTLLF 446

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEK 495
           ++     +  + +K       +  +I        I  E L +     ++A  I   I   
Sbjct: 447 SATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVY 506

Query: 496 KESNFR-----SVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                R        +    L ++         +HG +    +E  +  F+NG   +L+AT
Sbjct: 507 SGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVAT 566

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +  +++         + +H+  GR GR      CI  Y            
Sbjct: 567 NVAARGLDIPEVDLVVQSCPPKDVESYIHR-SGRTGRAGRTGVCICFY------------ 613

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
                 ++ + +A+             ++Q    KF          +++ + KDA  +L 
Sbjct: 614 ----QNKEEYQLAQ-------------VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLD 656

Query: 669 QDP 671
             P
Sbjct: 657 SVP 659


>gi|28901323|ref|NP_800978.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28809870|dbj|BAC62811.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|328469261|gb|EGF40207.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329]
          Length = 448

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 128/374 (34%), Gaps = 27/374 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
            PT  Q+ AI   +           +     GSGKTL  ++ M               +A
Sbjct: 27  KPTDIQKQAIPVAIAGKD------LLASSKTGSGKTLAFVLPMLHKSLKTKSFSAKDPRA 80

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI+AP   LA+Q Y  ++           +I G      + KAL R        I+ T  
Sbjct: 81  VILAPTRELAKQVYGELRSMLAGLSYDAALILGGENFNDQVKALRRY----PKFIVATPG 136

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D +++  L L  ++        + L L        +         +TL+ ++  D  
Sbjct: 137 RLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHNAAKHRRRQTLMFSATLDHA 196

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---- 500
                       P +  +   N   + I +   +         I  ++  + E       
Sbjct: 197 EVNDIASEMLNAPKRIAVGVSNEEHKDITQKFYLCDHLDHKEAILERVLSEAEYRQVIIF 256

Query: 501 ---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              R   ER  +           + G ++   + ++M  F+    K+L+ T V   G+D+
Sbjct: 257 TATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDI 316

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              + +I  +        +H++ GR GR       I L  P    +S+ R+      +  
Sbjct: 317 ATVTHVINFDMPKHTEEYVHRV-GRTGRAGNKGDAISLVGPK-DWDSFKRIETYLQQDLA 374

Query: 618 FLIAEEDLKQRKEG 631
           F + E DLK + +G
Sbjct: 375 FSVFE-DLKGKFKG 387


>gi|309750350|gb|ADO80334.1| ATP-dependent RNA helicase DeaD [Haemophilus influenzae R2866]
          Length = 613

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 132/364 (36%), Gaps = 36/364 (9%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+S I  +L           +     GSGKT    + + A +   E   
Sbjct: 21  SDLGFETPSPIQQSCIPHLLSG------NDVLGMAQTGSGKTAAFALPLLAQIDPSEKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  + + +      +  + G      R     R     A +++G
Sbjct: 75  QMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGG----QRYDIQLRALKQGAQVVVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 131 TPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMP 190

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I      ++ + +    L+ +  E   A  I 
Sbjct: 191 EPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +NG+  +++AT 
Sbjct: 251 ARTKTGTLD--------ITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S+++  +      + +H++ GR GR       +L   P   +       
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEH 361

Query: 610 VLKN 613
           ++K 
Sbjct: 362 LMKK 365


>gi|324507413|gb|ADY43143.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 492

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 153/442 (34%), Gaps = 56/442 (12%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIP--------INVEGKIAQK 264
           R  ++ +W S   +++  ++    ++ ++  R QF+ +  +          +V   + + 
Sbjct: 4   RGLREIDWRSQDLKQI--EKNFYHELPVVAQRSQFEVDRWMQENQVTVQGRDVPRPVFEF 61

Query: 265 ILRNIP----------FS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
                P          F  PT  Q  +                +     GSGKTL  ++ 
Sbjct: 62  NESGFPEVLVNMLYSSFERPTIIQSISWPIASSGRD------IVSIAKTGSGKTLAFILP 115

Query: 314 -MAAAVEA-------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
            +    +        G   +++ P   LAQQ  E  ++Y +   + V  + G   +  + 
Sbjct: 116 GIIHTTKQPPRGRGEGPSVLVLLPTRELAQQVQEVSREYCKAMGLSVTCLFGGAARGSQA 175

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLT-- 415
           + LER       + I T     D ++           L+L   D     G + +++    
Sbjct: 176 RDLER----GVDVAIATPGRLLDFLESGTTNLRRCSYLVLDEADRMLDMGFEPQIRKIVS 231

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDI--SKITEKPAGRKPIKTVIIPINRIDEVIE 473
           Q       L+ +AT       L S    D     +           T ++ +    +   
Sbjct: 232 QIRPDRQTLMFSATWPKEVRALASDFQSDHAFLNVGSLELAANHNITQVVEVVEEYQKQG 291

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           R+  +L++        P+ +       +   +               IHG  +  +++ V
Sbjct: 292 RMMTLLTDIMNQ----PECKTLVFVETKRKADDLTRSMRRDGWPTLCIHGDKNQGERDWV 347

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  FK+G   +L+AT V   G+DV D   +I  +  +     +H++ GR  R E+  +  
Sbjct: 348 LSEFKSGKTPILLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRI-GRTARCEKKGTAY 406

Query: 594 LLYHPPLSKNSYTRLSVLKNTE 615
             + P  +  +   + V++   
Sbjct: 407 TFFTPSNAPKARDLIKVMEEAN 428


>gi|281355042|ref|ZP_06241536.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281317922|gb|EFB01942.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 627

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/362 (20%), Positives = 136/362 (37%), Gaps = 35/362 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P+  Q   I  +L+       +  I Q   G+GKT    I +    E GG   QA+I++
Sbjct: 27  APSPIQALTIPKLLEG-----AVDLIGQAQTGTGKTAAFGIPVIELCEGGGKKPQALILS 81

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L+ Q  E +       ++ +    G        +   +       ++IGT     D
Sbjct: 82  PTRELSIQIAEELNSLKGKRKLRIAPFYGG----QMIEIQLQRLRDGIDVVIGTPGRIMD 137

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLT 438
            ++  KL        +L   DE    G  + ++    AT     +L+ +AT  P  L + 
Sbjct: 138 LMERGKLDFSELKFAVLDEADEMLDMGFVEDIEKILGATNSDKRMLMFSATMPPEILKIA 197

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                    +  + A      T  I    R ++  E L  ++   +  Y +         
Sbjct: 198 ERFMRSYETVRAESAQLNTELTEQIYFEVRREDKFEALSRIIDVEQDLYALVF------- 250

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              R+ V+      +     +  +HG ++ + +  V++ FK+   K+LIAT V   GIDV
Sbjct: 251 CRTRNDVDELVEKLKLRGHRVEALHGDIAQMQRTRVINQFKDKKFKILIATDVAARGIDV 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP----PLSKNSYTRLSVLKN 613
            D + +I  +        +H++ GR GR  +  + I    P     L+       + ++ 
Sbjct: 311 NDLTHVINYSMPQGTETYVHRI-GRTGRAGKNGTAITFVTPAEYRKLTMIQREAHTEIRR 369

Query: 614 TE 615
            E
Sbjct: 370 EE 371


>gi|257440057|ref|ZP_05615812.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
           prausnitzii A2-165]
 gi|257197409|gb|EEU95693.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
           prausnitzii A2-165]
          Length = 641

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 124/343 (36%), Gaps = 28/343 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           SP+  Q +AI  +L           +     G+GKT    + M   + A         +A
Sbjct: 23  SPSPIQAAAIPPVLAGRD------LMGCAQTGTGKTAAFALPMLDRLTASAPRKKGAIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E  + Y +   +   +I G + QA +  AL++       I+I    
Sbjct: 77  LILTPTRELALQIGESFEAYGKYLTLRSTVIFGGVGQAPQVAALKK----GVDILIACPG 132

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D +    L L  + E        R+           ++       + L+ ++    +
Sbjct: 133 RLNDLVGQGLLDLSNI-EIFVLDEADRMLDMGFVHDVKKVIAKLPRQRQNLMFSATMPKE 191

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------ 498
           I ++        P    + P++   + I++    + +G K + +   I+  K        
Sbjct: 192 IEQLAA-GILHDPAFVKVDPVSSTVDRIQQSLYFVEKGNKKFLLPWLIKNLKPEVVNALV 250

Query: 499 --NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   ++            A IHG  S   + + ++ FK G  ++L+AT +   GID
Sbjct: 251 FSRTKHGADKIAKDLNKQGIPAAAIHGNKSQTARVTALEDFKAGKTRVLVATDIAARGID 310

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           + + S +   +        +H++ GR  R     + +    P 
Sbjct: 311 ISELSHVFNYDLPEVPETYVHRI-GRTARAGADGTAVSFCAPE 352


>gi|185134419|ref|NP_001117665.1| Vasa [Oncorhynchus mykiss]
 gi|6521014|dbj|BAA88059.1| Vasa [Oncorhynchus mykiss]
          Length = 647

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 123/361 (34%), Gaps = 58/361 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------------ 319
            PT  Q+  I  I            +     GSGKT   L+ +   +             
Sbjct: 233 KPTPVQKHGIPIIAAGRD------LMACAQTGSGKTAAFLLPILQQLMVDGVAASQFSEI 286

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              + +I+AP   L  Q Y   +K+   T +   ++ G +   H  + + +  +    ++
Sbjct: 287 QEPEVIIVAPTRELINQIYMEARKFAHGTCVRPVVVYGGISTGHTIREILKGCN----VL 342

Query: 380 IGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
             T     D I   K+ L      ++DE  R                    + A    +T
Sbjct: 343 CATPGRLMDIIGRGKIGLSKLRYLVLDEADRMLDMGFEP--AMRKLVGSPGIPAKEDRQT 400

Query: 435 LVLTSLGDIDISKITEKP-----------------AGRKPIKTVIIPINRIDEVIERLKV 477
           L+ ++    DI K+                     +  + +   +   ++ D+++E LK 
Sbjct: 401 LMFSATYPEDIQKLAADFLKKDYLFLAVGVVGGACSDVEQVVVQVTKFSKRDQLLEVLKT 460

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
             SE    +              +   +   +       +   IHG     ++E  +  F
Sbjct: 461 TGSERTMVFV-----------ETKRQADFIATFLCREKVNTTSIHGDREQREREQALGDF 509

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G C +L+AT+V   G+D+ D   I+  +  +     +H++ GR GR       +  + 
Sbjct: 510 RSGRCPVLVATSVAARGLDIKDVQHIVNFDLPNNIDEYVHRI-GRTGRCGNTGRAVCFFD 568

Query: 598 P 598
           P
Sbjct: 569 P 569


>gi|260429679|ref|ZP_05783655.1| dead-box ATP-dependent rna helicase 53 [Citreicella sp. SE45]
 gi|260419162|gb|EEX12416.1| dead-box ATP-dependent rna helicase 53 [Citreicella sp. SE45]
          Length = 772

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 93/445 (20%), Positives = 170/445 (38%), Gaps = 62/445 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           + T  QE+ I   L  +        ++    GSGKT+   +A+A  +             
Sbjct: 16  TLTPVQEAVIAPELAGLD------LLVSAQTGSGKTVGFGLAIAPTLLGDETRFGPAAAP 69

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    +      T  +V    G M     R+ALER     AHI++GT
Sbjct: 70  LALVVAPTRELAFQVMRELTWLFARTGAVVASCVGGMDVRQERRALER----GAHIVVGT 125

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
               +D I+   L L  +        DE    G ++ L+           L  A    RT
Sbjct: 126 PGRLRDHIERESLDLSAIRAVVLDEADEMLDLGFREDLEFM---------LGEAPEDRRT 176

Query: 435 LVLTSLGDIDISKITEKPA-GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           L+ ++     I+ + +      + + TV       D   + ++V  S+ + A +   +  
Sbjct: 177 LLFSATVPPMIATLAKSYQRDARRVNTVDSASQHADISYQAIRVAQSDVEHAIFNLLRFH 236

Query: 494 EKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           + + +    N R+ V R  +   +   +   + G +S  ++   + + ++G  ++ +AT 
Sbjct: 237 DDESAIVFANTRAAVSRLTARLANRGLATVSLSGELSQTERSHALQAMRDGRARVCVATD 296

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ + +++I  +        LH+  GR GR        L+    ++K +   L 
Sbjct: 297 VAARGIDLPNLNLVIHADLPTNTETLLHR-SGRTGRAGRKGISALIVPSKVAKKAERLLK 355

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT- 668
             K + +  +    D  QRK+ E L           +A P   + L E     A+ +L  
Sbjct: 356 WAKISAEWTVAPSVDDIQRKDEERL-----------LADPVWSEPLTEEQGAFAEKLLAL 404

Query: 669 QDPD--------LTSVRGQSIRILL 685
             P+        L   R  +   LL
Sbjct: 405 HQPEVIAAAYLRLYQARHAAAEELL 429


>gi|152994240|ref|YP_001339075.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150835164|gb|ABR69140.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 418

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 127/370 (34%), Gaps = 39/370 (10%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                + +   I Q++      +PT  Q +AI  +L    +K+ M        G+GKT  
Sbjct: 1   MSFASLGLHQDIIQQVTELGYTTPTPIQLAAIPAVLA---KKDLMAG---AQTGTGKTAA 54

Query: 310 ALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
             + +   +          G Q +++ P   LAQQ +    KY+    I   +  G    
Sbjct: 55  FALPLLHQILQAKDSNTTKGIQVLVLTPTRELAQQVHASFLKYSAKLPIQSVVAYGGASI 114

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGV--QQR 411
             +  AL +       +++ T     + I        +   L+L   D     G     +
Sbjct: 115 NMQLDALRQ----GCDVLVATPGRLLELIMKNLIDLSKLQTLVLDEADRMLDMGFIIDIQ 170

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSL--GDIDISKITEKPAGRKPIKTVIIPINRID 469
             L +   +   L  +AT       L+     D  + ++  +      ++  I  +++  
Sbjct: 171 RILKKLPKSRQTLFFSATFNDEIFALSKTLLKDPQLIEVNSRNTTATQVEQTIYAVDQDR 230

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           +      ++ S+  +   I  +         +   +      E    +   IHG  S   
Sbjct: 231 KSALLSFLIGSKNWQQVLIFTRT--------KQGADELAKEMEKDGIATQSIHGDKSQGA 282

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           ++ V+  FK G  + L+AT V   GID+     ++     +     +H++ GR GR    
Sbjct: 283 RDRVLADFKAGKVRALVATDVAARGIDIEQLQYVVNHELPYNAEDYIHRI-GRTGRAGST 341

Query: 590 SSCILLYHPP 599
              I L    
Sbjct: 342 GLAISLVSEK 351


>gi|21410145|gb|AAH30895.1| Ddx21 protein [Mus musculus]
          Length = 689

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 143/423 (33%), Gaps = 72/423 (17%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------GQAV 325
             Q      +            I Q   G+GKT    I +   ++ G          Q +
Sbjct: 121 PIQAKTFHHVYSGKD------LIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVL 174

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  +     T+  ++ V    G  P   +   +ER+  G   I++GT   
Sbjct: 175 VLAPTRELANQVSKDFSDITK--KLSVACFYGGTPYGGQ---IERMRSG-IDILVGTPGR 228

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +D +Q  KL        +L  VD+    G   +++              +   P+TL+ 
Sbjct: 229 IKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKD----SEDNPQTLLF 284

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEK 495
           ++     +  + +K       +  +I        I  E L +     ++A  I   I   
Sbjct: 285 SATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVY 344

Query: 496 KESNFR-----SVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                R        +    L ++         +HG +    +E  +  F+NG   +L+AT
Sbjct: 345 SGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVAT 404

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +  +++         + +H+  GR GR      CI  Y            
Sbjct: 405 NVAARGLDIPEVDLVVQSCPPKDVESYIHR-SGRTGRAGRTGVCICFY------------ 451

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
                 ++ + +A+             ++Q    KF          +++ + KDA  +L 
Sbjct: 452 ----QNKEEYQLAQ-------------VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLD 494

Query: 669 QDP 671
             P
Sbjct: 495 SVP 497


>gi|66043725|ref|YP_233566.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
 gi|63254432|gb|AAY35528.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
          Length = 629

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|14548160|gb|AAA93186.2| DEAD family RNA helicase [uncultured crenarchaeote 4B7]
          Length = 451

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 124/347 (35%), Gaps = 35/347 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           ++ + F+ P   Q  +I ++L+          I Q   G+GKT    I M   +  GG  
Sbjct: 17  IKELGFTTPFPIQTQSIPELLRG------NDVIGQAHTGTGKTAAFGIPMLQNIIHGGGI 70

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           Q +++AP   LA Q  E IKK  + T+I V  + G      +  AL R    +  I++ T
Sbjct: 71  QGLVIAPTRELAMQITEEIKKVGKYTKIKVVTVYGGQGIGIQLDALRR----KPEIVVAT 126

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP 432
                D +            ++L   D     G  + ++  L +        L +AT  P
Sbjct: 127 PGRLIDHLDNGSIRTDNIKHVVLDEADVMLDMGFIEDIEYVLQKIPGNRITSLWSATMPP 186

Query: 433 RTLVLT--SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             L L+   L +     I       + I    + I   ++       +     +    C 
Sbjct: 187 EILRLSDKYLNNAKNILIDSDDLSGEGIDQAFLVIKDREKHKYLTDFINQNKGQVIVFCS 246

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                +      +  R+          +  I G MS   +E  M  F+     +L+AT V
Sbjct: 247 TKIRTRNVARDLIKSRY---------KVVPIEGDMSQNKREYSMMKFRKNQADILVATDV 297

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
              GIDV    +++  +  +  +   H++ GR  R       I L  
Sbjct: 298 AARGIDVPRVGLVVNYDVPNQDMVYFHRI-GRTARAGAKGKAITLVS 343


>gi|83594050|ref|YP_427802.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83576964|gb|ABC23515.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 799

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/360 (18%), Positives = 139/360 (38%), Gaps = 35/360 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAV 325
           +PT  Q  AI  +         +L I Q   G+GKT    + M   + +G       +++
Sbjct: 23  TPTPIQVQAIPYV----QMGRDVLGIAQ--TGTGKTASFTLPMIDILASGKAKARMPRSL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+AP   LA Q  E    Y +  ++ + ++ G      ++K L+R       ++I T   
Sbjct: 77  ILAPTRELATQVSENFTLYGKYQKLSMALLIGGESMNEQQKVLDR----GVDVLIATPGR 132

Query: 386 FQDSIQY-----YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D  +        + ++++DE  R      +   +       ++     I +TL  ++ 
Sbjct: 133 LIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVE------RIVALLPKIRQTLFFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
            D +I ++ +      P +  I P  ++ E +E+  +++   +K   +   +  +     
Sbjct: 187 MDKEIRRLADAFL-MNPKEVRIEPTQKVAETVEQALIMVKASEKREALRQLLRRETVTNA 245

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +  V+            I  +HG M    +   ++ FK    +L++ + V   G
Sbjct: 246 FIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMVCSDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV + S +   +        +H++ GR GR   +     L  P  +K      ++L  T
Sbjct: 306 IDVTEVSHVFNFDVPTHPEDYIHRI-GRTGRAGRLGRAYTLATPEDAKYLRAIENLLGKT 364


>gi|330820807|ref|YP_004349669.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
 gi|327372802|gb|AEA64157.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
          Length = 459

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 132/376 (35%), Gaps = 43/376 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L           +     G+GKT    + +   +   G        +
Sbjct: 23  TPTPVQAKAIPAVLGGKDV------MAAAQTGTGKTAGFALPLLQRLVQHGPAVASNRAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +    Y +   +      G +    +   L +       +++ T 
Sbjct: 77  VLVLVPTRELAEQLLQSFVDYGKGLDLRFLAAYGGVSINPQMMKLRK----GVDVLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++Q+ ++  +++DE  R        L          +  A P  R  +L 
Sbjct: 133 GRLLDLNRQNAVQFDQVQTLVLDEADRM-------LDLGFARELDAVFAALPERRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +       RKP+   +   N     I +  V + +  K       +   K  
Sbjct: 186 SATFSDEIRAMAANILRKPVDISVSAPNATASKIRQWVVTVDKRNKPELFMHLVARNKWE 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +       R+ V+   ++ E    ++  IHG      +   ++ FK    ++L+AT V  
Sbjct: 246 HALVFAKTRNGVDYLAAVLEQAGYAVDTIHGDKPQPARLRALERFKAREIQMLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ D  ++I  +        +H++ GR GR       + L     +       ++++
Sbjct: 306 RGLDIDDLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALIR 364

Query: 613 NT-----EDGFLIAEE 623
            T     E GF  AE 
Sbjct: 365 QTLRREEEPGFE-AEH 379


>gi|290891221|ref|ZP_06554283.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429]
 gi|290479185|gb|EFD87847.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429]
          Length = 521

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/338 (18%), Positives = 122/338 (36%), Gaps = 34/338 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  QE  I  I+Q       +  I Q   G+GKT    + +   V+      QA++++P 
Sbjct: 25  TPIQEKTIPLIIQG------VDVIGQAQTGTGKTAAFGLPILEEVDPKNPQIQALVISPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + K   +  +  +++ G      +  AL+        I++GT     D +
Sbjct: 79  RELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQIHALKE----HPQILVGTPGRLIDHL 134

Query: 391 QYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTAT--PIPRTLVLT 438
             +         L++   DE    G  + ++     T      LL +AT     + + + 
Sbjct: 135 NRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQTLLFSATMPDDIKKIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +   I  K      +   ++     ++     ++   E  +   +  +       
Sbjct: 195 FMKDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRLFDVEQPELAIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +      A IHG +    +   + SFK G  + L+AT V   G+D+ 
Sbjct: 249 --KRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             + +   +      + +H++ GR GR       +   
Sbjct: 307 GVTHVYNYDVPQDPESYVHRI-GRTGRAGHHGVSVTFV 343


>gi|157145669|ref|YP_001452988.1| ATP-dependent RNA helicase DbpA [Citrobacter koseri ATCC BAA-895]
 gi|157082874|gb|ABV12552.1| hypothetical protein CKO_01417 [Citrobacter koseri ATCC BAA-895]
          Length = 457

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 136/357 (38%), Gaps = 23/357 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLEMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQHIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  + +        R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-QTLVMDEADRMLDMGFSDAIDEVIRFAPSRRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   + P+   I  ++ +  + ++     S+GK         + +     
Sbjct: 187 WPEAIAAISGR-VQQNPLTIEIDSVDALPSIEQQFFETSSQGKIPLLQKLLSQHQPASCV 245

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G+
Sbjct: 246 VFCNTKKDCQSVCDALNSVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGL 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 306 DIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANILSEMLQ 361


>gi|172058976|ref|YP_001815436.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171991497|gb|ACB62419.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 481

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/361 (19%), Positives = 131/361 (36%), Gaps = 37/361 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           +  + + +PT  Q++ I   L           I++   GSGKT    I +   VE     
Sbjct: 19  IEQLGYHTPTDVQQAVIPVALS------EKDIIVKSRTGSGKTASFGIPLCELVEWEENK 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E +    +  +I    + G  P   +   L++    + HI++G
Sbjct: 73  PQALILTPTRELALQVTEDVMNIGRYKRIKATAVFGKQPFRGQVAELKQ----KTHIVVG 128

Query: 382 THALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D ++           L+L   DE    G   ++           +L        
Sbjct: 129 TPGRVLDHLERGTLSLEKVKYLVLDEADEMLNMGFLDQV---------DTILKQLPKQRT 179

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    DI +++++         +      I E+      V  + K A      + 
Sbjct: 180 TMLFSATFPQDIHQLSDRYMQSPKQVEITTKATEIAEIEHSYIKVTDKTKFAVLKDVTVV 239

Query: 494 EKKESNF-----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           E  +        +  V+            +  IHG M   ++ +VM +F+ G  + L+AT
Sbjct: 240 ENPDRCMIFCRTKEHVDFVAQGLASMDYPVEKIHGGMEQDERLAVMKAFRAGEFRYLVAT 299

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+ + + +I  +      + +H+  GR GR   +   I L      +      
Sbjct: 300 DVAARGIDIENITHVIQYDMPVEKESYVHR-TGRTGRAGALGKAISLVTESDMRRLREVE 358

Query: 609 S 609
            
Sbjct: 359 Q 359


>gi|303238786|ref|ZP_07325318.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593665|gb|EFL63381.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 381

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/379 (16%), Positives = 142/379 (37%), Gaps = 28/379 (7%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                +N+   I + I      +PT  Q+ AI  IL+          +     G+GKT  
Sbjct: 1   MDFEKLNIITPILKAICEEGYTTPTLIQQQAIPVILEGRD------LLGCAQTGTGKTAA 54

Query: 310 ALIAMAAAVEAGG---------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
             I +   +             + +I+ P   LA Q  E ++ Y + T I   +I G + 
Sbjct: 55  FAIPLLQTLYKERTNLKGQRIVKGLILTPTRELAIQIGESLEAYGRYTGIKHAVIFGGVS 114

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
           Q  +   L         II+ T     D +    + +  + +        R+     +  
Sbjct: 115 QVPQVNKLRS----GVDIIVATPGRLLDLMNQKYINVSCL-KMLILDEADRMLDMGFSFD 169

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              ++   T   +TL+ ++    +I+K+ +    + P+K  + P++   + IE+    + 
Sbjct: 170 VKKIISRLTDTRQTLLFSATMPKEITKMVD-AILKNPVKVEVTPVSSTVDTIEQNVYFVE 228

Query: 481 EGKKAYWICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           +  K   +   ++ +        +  +   ++        + +   IHG  S + ++  +
Sbjct: 229 QKDKKSLLIKLLKNRAIESVLVFTRTKHGADKIAKDLAKLSITAQAIHGDKSQVARQIAL 288

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           ++FK    ++L+AT +   GID+ + S II  +  +     +H++ GR GR   + + + 
Sbjct: 289 NNFKLKRTRVLVATDIAARGIDIQELSHIINFDLPNVPETYVHRI-GRTGRAGMVGTALS 347

Query: 595 LYHPPLSKNSYTRLSVLKN 613
                          ++  
Sbjct: 348 FCDREEMGYLRAIQKLISK 366


>gi|330896875|gb|EGH28465.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 445

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 138/365 (37%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA------AAVEAGGQAV 325
            PT  Q +AI   LQ    +      +    GSGKT   ++ +       A V    +AV
Sbjct: 22  EPTPVQAAAIPLALQGRDLR------VTAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAV 75

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + +++++Q T +   +ITG      +   L ++      I+IGT   
Sbjct: 76  ILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV----PDILIGTPGR 131

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQ--KATAPHVLLMTATPI---P 432
             + +    L L  V        D     G  + ++      A     +L +AT      
Sbjct: 132 LLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGGCAGREQTMLFSATTGGAGL 191

Query: 433 RTLVLTSLGDIDISKI---TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           R ++   L D    ++   +E  +G +            ++V+    ++ +E  +   I 
Sbjct: 192 REMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNW--LLANETYQKAIIF 249

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +++ +R             ++HG     D+++ +D  K G  K+++AT 
Sbjct: 250 T--------NTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATD 301

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV    ++I  +    G   +H++ GR GR       I L          +   
Sbjct: 302 VAARGLDVEGLDMVINFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICHGDWNLMSSVER 360

Query: 610 VLKNT 614
            LK +
Sbjct: 361 YLKQS 365


>gi|227499384|ref|ZP_03929495.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098]
 gi|227218446|gb|EEI83689.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098]
          Length = 553

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 146/368 (39%), Gaps = 38/368 (10%)

Query: 245 KQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           ++ K       N+   I Q I      +P+  QE  I+ +L           I Q   G+
Sbjct: 10  RKGKIMKFNEFNIGEDILQAIDDMGYTNPSPIQEETIQYLLDGRDV------IGQAQTGT 63

Query: 305 GKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQ 361
           GKT    I +   VEA    Q++I+ P   L  Q    ++K T+  + I V  + G    
Sbjct: 64  GKTAAFAIPLVENVEANDITQSLILCPTRELCMQVAREVEKLTKYKKDIKVLALYGGTQI 123

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK 413
             + KALE+     A I++GT     D ++   L L ++        DE    G +  +K
Sbjct: 124 VKQIKALEK----GAEIVVGTPGRVIDLMKRRVLKLDMLKNVVLDEADEMFDMGFRDDMK 179

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
           +   AT          P  +T   ++    + ++ ++      P K VI       E I+
Sbjct: 180 VILDATN---------PQRQTCFFSATMGKEFAEFSKLYQN-NPQKIVIKADEVTVEKID 229

Query: 474 RLKVVLSEGKKAYWICPQIE---EKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSD 527
           +  + L E  K   +   +E    K    F +   + + L E  T     +  +HG +  
Sbjct: 230 QYYIKLKEAMKEETLTRLLEINNPKLAIVFCNTKRKVDKLVEELTKKSYLVDGLHGDLKQ 289

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             ++ VM  F+N T ++LIAT V   G+D+ D  ++I  +        +H++ GR  R  
Sbjct: 290 SARDQVMKKFRNKTIQILIATDVAARGLDIDDVDLVINYDLPQLDEYYVHRI-GRTARAG 348

Query: 588 EISSCILL 595
           +      L
Sbjct: 349 KSGVSYSL 356


>gi|71736956|ref|YP_273717.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|289647906|ref|ZP_06479249.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298488177|ref|ZP_07006214.1| ATP-dependent RNA helicase SrmB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557509|gb|AAZ36720.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157456|gb|EFH98539.1| ATP-dependent RNA helicase SrmB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330869381|gb|EGH04090.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330988677|gb|EGH86780.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010277|gb|EGH90333.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 445

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 139/365 (38%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA------AAVEAGGQAV 325
            PT  Q +AI   LQ    +      +    GSGKT   ++ +       A V    +AV
Sbjct: 22  EPTPVQAAAIPLALQGRDLR------VTAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAV 75

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + +++++Q T +   +ITG      +   L ++      I+IGT   
Sbjct: 76  ILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV----PDILIGTPGR 131

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPI---P 432
             + +    L L  V        D     G  + ++    + A     +L +AT      
Sbjct: 132 LLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGL 191

Query: 433 RTLVLTSLGDIDISKI---TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           R ++   L D    ++   +E  +G +            ++V+    ++ +E  +   I 
Sbjct: 192 REMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNW--LLANETYQKAIIF 249

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +++ +R             ++HG     D+++ +D  K G  K+++AT 
Sbjct: 250 T--------NTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATD 301

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV    ++I  +    G   +H++ GR GR       I L          +   
Sbjct: 302 VAARGLDVEGLDMVINFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICHGDWNLMSSVER 360

Query: 610 VLKNT 614
            LK +
Sbjct: 361 YLKQS 365


>gi|323693539|ref|ZP_08107743.1| hypothetical protein HMPREF9475_02606 [Clostridium symbiosum
           WAL-14673]
 gi|323502394|gb|EGB18252.1| hypothetical protein HMPREF9475_02606 [Clostridium symbiosum
           WAL-14673]
          Length = 422

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/350 (21%), Positives = 131/350 (37%), Gaps = 35/350 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           LR + +  PT+ Q+  I  +L+          + +   GSGKT    I +   +   E  
Sbjct: 22  LRLLGYERPTEIQQQVIPAMLEGK------NVVGRAPTGSGKTAAFAIPICDKIIWEENL 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   L  Q  E +    +  ++ V  + G  P   + ++L++    ++HI+ G
Sbjct: 76  PQALILEPTRELTVQVQEEVFHIGRKKRLKVPAVFGGFPIDKQIRSLKQ----KSHIVTG 131

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGV----QQRLKLTQKATAPHVLLMTAT 429
           T     D I+   LIL  V        D     G     +Q L L        +   T  
Sbjct: 132 TPGRVMDHIRRGSLILDKVTCLVIDEADLMLDMGFIDEVKQILDLLSPECRIALFSATLK 191

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P  R    + + D+ +    +  A    I   +   +  ++    L V+  E  +   I 
Sbjct: 192 PEIREFAGSHIHDMVMIFTEQPEAAENAITEELFETDNENKFKVFLNVLYRENPQCCIIF 251

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
               E            F  L  H      +IHG +   ++   +D+F+ G  + LIAT 
Sbjct: 252 CGTREMVNV-------LFQKLRRHRIF-CGMIHGELEQKERLKTIDAFRRGAIRYLIATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   GID+ + + +I  +        +H++ GR GR       + L    
Sbjct: 304 VAARGIDLENITHVINYDFPTGRETYVHRI-GRTGRNGRTGKAVSLVTAE 352


>gi|89074254|ref|ZP_01160744.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium sp. SKA34]
 gi|89049958|gb|EAR55492.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium sp. SKA34]
          Length = 427

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 139/384 (36%), Gaps = 56/384 (14%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----- 319
           L ++ + +PT  Q+ AI   L+          +     G+GKT    + +   +      
Sbjct: 16  LTDLGYSTPTDVQQQAIPLALKG------DDVMAGAQTGTGKTAAFTLPLLQRLMTLPSQ 69

Query: 320 ---------------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
                             +A+I+ P   LAQQ ++ I  Y + T+I V +  G      +
Sbjct: 70  AEQVSTAVENNQKSRNKIRALILTPTRELAQQVFDSITTYAKYTEIKVAVAYGGTSMNVQ 129

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKAT 419
            KAL    +  A I++ T     D +    + L  V     DE  R      +   Q+  
Sbjct: 130 VKAL----NAGAEILVATPGRLLDHVFNGSVSLSEVETFVLDEADRMLDMGFIVDIQR-- 183

Query: 420 APHVLLMTATP-IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                +M   P   +TL  ++     + K+        P    + P N   E +E++   
Sbjct: 184 -----IMKRMPAERQTLFFSATFSKQVKKLAFD-ILTNPKMVEVTPANTAAETVEQIVYP 237

Query: 479 LSEGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           + + +KA  +   I  +           +   ++            + I+G  S   ++ 
Sbjct: 238 VDKHRKAELLAYLIGSRNWRQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQR 297

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
            +D FK+G  ++L+AT V   G+D+     ++  +        +H++ GR GR       
Sbjct: 298 ALDDFKSGKTRVLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRI-GRTGRAGMTGHA 356

Query: 593 ILLYHPPLSKNSYTRLSVLKNTED 616
           I L    +S +    L  ++   D
Sbjct: 357 ITL----MSLDEEWALKAIEELLD 376


>gi|330984676|gb|EGH82779.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 625

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|78186849|ref|YP_374892.1| DEAD/DEAH box helicase-like [Chlorobium luteolum DSM 273]
 gi|78166751|gb|ABB23849.1| DEAD/DEAH box helicase-like protein [Chlorobium luteolum DSM 273]
          Length = 418

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/366 (18%), Positives = 124/366 (33%), Gaps = 47/366 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QA 324
           PT  Q  AI  IL+          +     G+GKT    I +   +            ++
Sbjct: 24  PTPIQTEAIPLILKG------SDLLGCAQTGTGKTAAFAIPILQLLRERKAIDGKRKIRS 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E    Y ++T +   +I G + Q  +  AL R       I++ T  
Sbjct: 78  LIVTPTRELAIQIGESFSAYGRHTGLTNTVIFGGVGQNPQVNALRR----GVDILVATPG 133

Query: 385 LFQDSIQYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT 434
              D +    L        +L   D     G     R  L         L  +AT  P  
Sbjct: 134 RLLDLMNQGILHLHDIEILVLDEADRMLDMGFIHDIRKILAAVPKERQSLFFSATMPPEI 193

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
             L+S                 P K  + P++   ++I +    +  G K+  +   ++ 
Sbjct: 194 QRLSSTILRH------------PAKVSVTPVSSTVDIINQQIYFVDRGNKSGLLVHLLQN 241

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   ++     E    +   IHG  +   ++  + +FK+   ++L+AT
Sbjct: 242 PDIRTVLVFTRTKHGADKVVRHLEKHNITAEAIHGNKAQNARQRALSNFKSQKTRVLVAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            +   GIDV D   +I     +     +H++ GR GR     + I        +      
Sbjct: 302 DIAARGIDVDDLEWVINYEMSNIAETYVHRI-GRTGRAGSAGTAISFCDAEEKEYLRDIE 360

Query: 609 SVLKNT 614
            ++  +
Sbjct: 361 KLIAKS 366


>gi|298369527|ref|ZP_06980844.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282084|gb|EFI23572.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 456

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 135/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +PT  Q +AI   L           +     G+GKT   ++     ++    A       
Sbjct: 24  TPTPIQTAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYATASTSPAMH 77

Query: 325 ----VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               +++ P   LA Q  + ++ Y +N  +   ++ G +    +   L         I++
Sbjct: 78  PVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRAGCE----IVV 133

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT- 429
            T     D ++           ++L   D     G     R  +         LL +AT 
Sbjct: 134 ATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATF 193

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  R L    +   +I ++  +      ++  II ++ + +     ++++        +
Sbjct: 194 APPIRKLAKDFMNAPEIVEVAAQNTTSSNVEQHIIAVDALKKRNLLERLIVDLQMNQVIV 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + ++  +   R +V R          +   IHG  S   +   +++FK G+ ++L+AT
Sbjct: 254 FCKTKQSVDQVTRDLVRR--------NLAAQSIHGDKSQQSRLETLNAFKEGSLRVLVAT 305

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I           +H++ GR GR       I L    + K      
Sbjct: 306 DVAARGLDIAELPFVINYELPTQPEDYVHRI-GRTGRAGADGVAISL----MDKTEQKMF 360

Query: 609 SVLKNTEDGFLIAEEDLK 626
             +K    G  +A E ++
Sbjct: 361 EAIKELT-GNDLAVERIE 377


>gi|170722989|ref|YP_001750677.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169760992|gb|ACA74308.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 452

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/366 (19%), Positives = 138/366 (37%), Gaps = 42/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAV 325
            PT  Q +AI   LQ    +      +    GSGKT   ++ +   +          +A+
Sbjct: 35  EPTPVQAAAIPLALQGRDLR------VTAQTGSGKTAAFVLPLLNRLVDLKGARVEIRAL 88

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + ++ ++Q T I   ++TG      +   L ++      ++IGT   
Sbjct: 89  ILLPTRELAQQTLKQVQLFSQFTYIKAGLVTGGEDFKEQAAMLRKV----PDVLIGTPGR 144

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATP---IP 432
             + +    L L  V        D     G  + ++    +       LL +AT      
Sbjct: 145 LLEQLNAGNLDLSHVQVMILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGGAAL 204

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICP 490
           R ++   L D +   +       +  +  +I    ++  E I +  +   +  KA     
Sbjct: 205 RDIIGKVLKDPEHLMLNSVSQLAEGTRQQVITADHDQHKEAIVQWLLANEKFDKAIIFTN 264

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     R + +R             ++HG     D++  ++ FK G+ K+L+AT V
Sbjct: 265 T---------RVLADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDV 315

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRLS 609
              G+D+    ++I  +    G   +H++ GR GR G E  +  L+ H   +  S     
Sbjct: 316 AARGLDIDGLDLVINFDMPRSGDEYVHRI-GRTGRAGGEGLAISLITHNDWNLMSSIERY 374

Query: 610 VLKNTE 615
           + +  E
Sbjct: 375 LKQQFE 380


>gi|153835973|ref|ZP_01988640.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
 gi|308094943|ref|ZP_05892523.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus AN-5034]
 gi|308095142|ref|ZP_05903781.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus Peru-466]
 gi|308125529|ref|ZP_05775749.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus K5030]
 gi|149750727|gb|EDM61472.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
 gi|308085569|gb|EFO35264.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus Peru-466]
 gi|308092338|gb|EFO42033.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus AN-5034]
 gi|308112170|gb|EFO49710.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus K5030]
          Length = 444

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 128/374 (34%), Gaps = 27/374 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
            PT  Q+ AI   +           +     GSGKTL  ++ M               +A
Sbjct: 23  KPTDIQKQAIPVAIAGKD------LLASSKTGSGKTLAFVLPMLHKSLKTKSFSAKDPRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI+AP   LA+Q Y  ++           +I G      + KAL R        I+ T  
Sbjct: 77  VILAPTRELAKQVYGELRSMLAGLSYDAALILGGENFNDQVKALRRY----PKFIVATPG 132

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D +++  L L  ++        + L L        +         +TL+ ++  D  
Sbjct: 133 RLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHNAAKHRRRQTLMFSATLDHA 192

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF---- 500
                       P +  +   N   + I +   +         I  ++  + E       
Sbjct: 193 EVNDIASEMLNAPKRIAVGVSNEEHKDITQKFYLCDHLDHKEAILERVLSEAEYRQVIIF 252

Query: 501 ---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              R   ER  +           + G ++   + ++M  F+    K+L+ T V   G+D+
Sbjct: 253 TATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDI 312

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              + +I  +        +H++ GR GR       I L  P    +S+ R+      +  
Sbjct: 313 ATVTHVINFDMPKHTEEYVHRV-GRTGRAGNKGDAISLVGPK-DWDSFKRIETYLQQDLA 370

Query: 618 FLIAEEDLKQRKEG 631
           F + E DLK + +G
Sbjct: 371 FSVFE-DLKGKFKG 383


>gi|145491061|ref|XP_001431530.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398635|emb|CAK64132.1| unnamed protein product [Paramecium tetraurelia]
          Length = 532

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/368 (21%), Positives = 140/368 (38%), Gaps = 47/368 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-----GGQAVIM 327
           PT  Q S    I+           I     GSGKT+  L+     +E+     G   +I+
Sbjct: 94  PTPIQASVFPIIMSGHD------LIGIAQTGSGKTIAYLLPGLVHIESQRKKGGPMMLIL 147

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LA Q  E I  +++   +    I G   +  +  AL R       I++ T     
Sbjct: 148 VPTRELAMQIQEHISYFSEAYNMNSACIYGGADKRPQEMALAR----DPDIVVATPGRLI 203

Query: 388 DSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVL 437
           D +            L+L   D     G +Q+++            +  +AT  P+T+  
Sbjct: 204 DFLDAQVTNLHNVTYLVLDEADRMLDMGFEQQVRKIDSYIREDRQTVFFSAT-WPKTVQN 262

Query: 438 TSLGDIDISKITEKPAGRKPI--------KTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            +  D+  ++      G + +        +T+ +  N   E +  +   LS   K   + 
Sbjct: 263 LA-CDLCHNEPINLYIGSQEVTINKNITQETICLYQNEKQEELLYILEELSNKDK---VL 318

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +E KK+       +  + L EH       +HG  +   ++ VM  FK   CKLL AT 
Sbjct: 319 IFVETKKDCE-----DLASYLSEHGFF-CMSLHGDKTQQQRDYVMKEFKASKCKLLCATD 372

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN--SYTR 607
           V   G+DV D S++I  +  +     +H++ GR GR  +    I +          +   
Sbjct: 373 VASRGLDVRDISLVINYDFPNQIDNYVHRI-GRTGRAGDKGRSITMITLDAMDPRVAKQL 431

Query: 608 LSVLKNTE 615
           + +LK++E
Sbjct: 432 VDLLKDSE 439


>gi|326408143|gb|ADZ65208.1| DEAD-box ATP-dependent RNA helicase YdbR [Brucella melitensis M28]
          Length = 626

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 148/365 (40%), Gaps = 46/365 (12%)

Query: 272 SPTKSQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGG 322
           + T  Q + +  + L           ++    GSGKT+   +AMA  +        +AG 
Sbjct: 22  TLTAVQNAVLAPETLAS-------DLLVSAQTGSGKTVAFGLAMANTILEDELRFGDAGA 74

Query: 323 Q-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LA Q    ++    +T   +    G M     R+ALER     +HI++G
Sbjct: 75  PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GSHIVVG 130

Query: 382 THALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D I        Q   ++L   DE    G ++ L+           L  A    R
Sbjct: 131 TPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFI---------LGEAPEDRR 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I+++ ++        TV    ++  + I+ + + +   ++ + I   + 
Sbjct: 182 TLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHAD-IDYVAMPVPPHERDHAIINTLL 240

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                N       R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +        LH+  GR GR     +C+L+      +++   
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGTCVLVVPFSRRRSAERL 359

Query: 608 LSVLK 612
           L + K
Sbjct: 360 LHMAK 364


>gi|74317751|ref|YP_315491.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74057246|gb|AAZ97686.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 477

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/376 (19%), Positives = 130/376 (34%), Gaps = 35/376 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 27  APTPIQAQAIPHVLAG------GDLLAAAQTGTGKTAGFTLPILHQLSTRAAVAPKPGRP 80

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           + +I+ P   LA Q  E +K Y +   +   ++ G +    + KAL+     +  I++ T
Sbjct: 81  RCLILVPTRELAAQVEESVKTYGKYLSLTSMVMFGGVNINPQFKALKA----RVDILVAT 136

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D +    + L  V+        + L +        VL +   P  R  +L S   
Sbjct: 137 PGRLLDHVAQKTVDLSGVEILVLDEADRMLDMGFIRDIRRVLAVL--PKQRQNLLFSATF 194

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
            D  +         P    +   N   EV+E+    + +  K   +   I+         
Sbjct: 195 SDEIRTLANGLLNNPKSVEVARRNTTAEVVEQSMHRVPQAHKRDLLAHLIKHHDWQQVLV 254

Query: 500 FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F       N L E         A IHG  S   +   + SFK+G+ + L+AT +   GID
Sbjct: 255 FTRTKHGANKLAEKLNKDGITAAAIHGNKSQSARTKALASFKDGSVRALVATDIAARGID 314

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK---- 612
           +     ++     +     +H++ GR GR     S + L              ++K    
Sbjct: 315 IDQLPQVVNFELPNVPEDYVHRI-GRTGRAGATGSALSLVDDEEMGYLRDIEKLIKRAIV 373

Query: 613 --NTEDGFL-IAEEDL 625
               E GF+  A+ DL
Sbjct: 374 RVEIEPGFVPPAKADL 389


>gi|330899330|gb|EGH30749.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 629

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|257483568|ref|ZP_05637609.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 514

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|255635856|gb|ACU18275.1| unknown [Glycine max]
          Length = 413

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 128/346 (36%), Gaps = 43/346 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYSVTECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----SSGVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L   
Sbjct: 172 MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEAL--- 228

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
                   +IT K    KP++ ++      ++ + +    V  E  K   +C   E    
Sbjct: 229 --------EITRKFMN-KPVRILVKRDELTLEGIKQFHVNVEKEEWKLDTLCDLYETLAI 279

Query: 497 -----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             GIDV   S++I  +        LH++ GR GR       I    
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVT 384


>gi|237798870|ref|ZP_04587331.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021724|gb|EGI01781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 445

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 139/365 (38%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA------AAVEAGGQAV 325
            PT  Q +AI   LQ    +      +    GSGKT   ++ +       A V    +AV
Sbjct: 22  EPTPVQAAAIPLALQGRDLR------VTAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAV 75

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + +++++Q T +   +ITG      +   L ++      I+IGT   
Sbjct: 76  ILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV----PDILIGTPGR 131

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPI---P 432
             + +    L L  V        D     G  + ++    + A     +L +AT      
Sbjct: 132 LLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGL 191

Query: 433 RTLVLTSLGDIDISKI---TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           R ++   L D    ++   +E  +G +            ++V+    ++ +E  +   I 
Sbjct: 192 REMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNW--LLANETYQKAIIF 249

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +++ +R             ++HG     D+++ +D  K G  K+++AT 
Sbjct: 250 T--------NTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATD 301

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV    +++  +    G   +H++ GR GR       I L          +   
Sbjct: 302 VAARGLDVEGLDMVVNFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICHGDWNLMSSVER 360

Query: 610 VLKNT 614
            LK +
Sbjct: 361 YLKQS 365


>gi|71280589|ref|YP_270076.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71146329|gb|AAZ26802.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 432

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 130/380 (34%), Gaps = 48/380 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
            PT  Q  AI  +            I   + GSGKT    + M   +             
Sbjct: 30  QPTPIQARAIPSVFAGRD------LIAGANTGSGKTATFALPMLQKLREDISSGSKNSKG 83

Query: 322 --GQAVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRKALERIAHGQAH 377
                +++ P   LA+Q  + IK Y  +    I    + G +    +  AL     G   
Sbjct: 84  NFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQMLALR----GGVD 139

Query: 378 IIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMT 427
           I++ T     D I        +   L+L   D     G  + L   L         LL +
Sbjct: 140 ILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALTPKKKQTLLFS 199

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           AT   +   LT     +  +I  + A    +   +  +N+ ++      ++  E  +   
Sbjct: 200 ATFPEQVTTLTQELLNNPIEIQLQSADASTLVQRVFTVNKGEKTAVLAHLIQQEQWRQAL 259

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I          N +   E           + A+ HG     ++  V+D FK G  ++LIA
Sbjct: 260 IFV--------NAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGDIEVLIA 311

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL-----YHPPLSK 602
           T +   G+D+    ++I  N        +H++ GR GR  E+   I L     YH     
Sbjct: 312 TDIAARGLDIEKLPVVINFNLPRSPSDYMHRI-GRSGRAGEVGLAISLIDHEDYHHFSVI 370

Query: 603 NSYTRLSVLKNTEDGFLIAE 622
               +  + +   +GF  AE
Sbjct: 371 EKKNKFRLKREQVEGFEAAE 390


>gi|254704340|ref|ZP_05166168.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|260566411|ref|ZP_05836881.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|260155929|gb|EEW91009.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
          Length = 503

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 142/393 (36%), Gaps = 40/393 (10%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R   D   A  +  + + K+        + + G + + +       P   Q  AI   L
Sbjct: 64  RRFKADRECAVPLKEIELTKENTGG-FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQL 122

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
           +          +     GSGKT    + +   +            +A+I+AP   LA Q 
Sbjct: 123 EGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQI 176

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+  +++  I   ++ G + +  + K +         ++I T     D +       
Sbjct: 177 EQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATPGRLTDLMRDGLVDL 232

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISK 447
            Q   L+L   D     G    +K   KAT       L +AT       L      D  +
Sbjct: 233 SQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVR 292

Query: 448 ITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P G     I  V+ P+   ++      ++     ++  +  + +   ++  R    
Sbjct: 293 VEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGADAVVRH--- 349

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 E     +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV   S ++ 
Sbjct: 350 -----LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +        +H++ GR GR     + I LY P
Sbjct: 405 YDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|237815476|ref|ZP_04594474.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A]
 gi|237790313|gb|EEP64523.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A]
          Length = 545

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 142/393 (36%), Gaps = 40/393 (10%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R   D   A  +  + + K+        + + G + + +       P   Q  AI   L
Sbjct: 78  RRFKADRECAVPLKEIELTKENTGG-FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQL 136

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
           +          +     GSGKT    + +   +            +A+I+AP   LA Q 
Sbjct: 137 EGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQI 190

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+  +++  I   ++ G + +  + K +         ++I T     D +       
Sbjct: 191 EQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATPGRLTDLMRDGLVDL 246

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISK 447
            Q   L+L   D     G    +K   KAT       L +AT       L      D  +
Sbjct: 247 SQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVR 306

Query: 448 ITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P G     I  V+ P+   ++      ++     ++  +  + +   ++  R    
Sbjct: 307 VEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGADAVVRH--- 363

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 E     +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV   S ++ 
Sbjct: 364 -----LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 418

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +        +H++ GR GR     + I LY P
Sbjct: 419 YDLPDEPETYVHRI-GRTGRNGASGASITLYDP 450


>gi|300779372|ref|ZP_07089230.1| DEAD/DEAH box family ATP-dependent RNA helicase [Chryseobacterium
           gleum ATCC 35910]
 gi|300504882|gb|EFK36022.1| DEAD/DEAH box family ATP-dependent RNA helicase [Chryseobacterium
           gleum ATCC 35910]
          Length = 562

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/367 (19%), Positives = 140/367 (38%), Gaps = 41/367 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           +  + +  PT+ Q+  I  IL D+        I     G+GKT    + +   ++     
Sbjct: 17  IGELGYESPTEIQKQTIPFILSDI-----RDLIALAQTGTGKTAAFSLPILDMIDDTSRK 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++ P   L  Q  + IK Y++  + I    + G      + ++L+     +  II+
Sbjct: 72  IQLLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVYGGSSIVEQMRSLKD----KPQIIV 127

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-I 431
           GT     D I          + L+L   DE    G +  L+           +++ TP  
Sbjct: 128 GTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELE----------TILSETPET 177

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            +T + ++  + ++ +I++     KP +  +  IN + + I     V+   +K   +   
Sbjct: 178 KQTFLFSATMNKEVERISKNYLT-KPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRL 236

Query: 492 IEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           I+             R   +           +   +HG +S   +++VM  F+     +L
Sbjct: 237 IDANPNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDIL 296

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+DV   + +I  +        +H+  GR GR  +    + L  P  S+   
Sbjct: 297 VATDVAARGLDVNSLTHVIHFSLPDDPEVFVHR-SGRTGRAGKDGISMALIKPEESRKLK 355

Query: 606 TRLSVLK 612
              S  K
Sbjct: 356 QIKSATK 362


>gi|163744883|ref|ZP_02152243.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanibulbus indolifex HEL-45]
 gi|161381701|gb|EDQ06110.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanibulbus indolifex HEL-45]
          Length = 699

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/359 (21%), Positives = 133/359 (37%), Gaps = 46/359 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           + T  QE+     L D         ++    GSGKT+   +A+A  +        +AG  
Sbjct: 16  TLTAVQEAVTDPALND------ADLLVSAQTGSGKTVGFGLAIAPTLLGDDTHFGQAGAP 69

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+AP   LA Q    +         IV    G M     R+AL+R     AHI++ T
Sbjct: 70  LALIIAPTRELAMQVSRELTWLYGKAGAIVTTCVGGMDTRTERRALDR----GAHIVVAT 125

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP 432
                D I+   + L  +        DE    G ++ L+    +       LL +AT   
Sbjct: 126 PGRLCDHIKRNNINLDAIRAVVLDEADEMLDLGFREDLEFILSESPEDRRTLLFSATVPA 185

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTV-----IIPINRIDEVIERLKVVLSEGKKAYW 487
               L      D  +IT     ++          + P +  + +I  L+    E K A  
Sbjct: 186 AIAKLAKSYQRDAQRITTVGEAKQHSDIEYRALNVHPRDTENAIINVLRF--YEAKNAIV 243

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C           R+ V R  S   +   S+  + G ++  ++ + + + ++G  ++ IA
Sbjct: 244 FCNT---------RAAVARLTSRFTNRGFSVVALSGELTQSERTNALQALRDGRARVCIA 294

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           T V   GID+ +  ++I  +        LH+  GR GR        L+    L   +  
Sbjct: 295 TDVAARGIDLPNLELVIHADLPSNSDTLLHR-SGRTGRAGRKGVSALIVPAKLRSKANR 352


>gi|148827371|ref|YP_001292124.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
 gi|148718613|gb|ABQ99740.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
          Length = 613

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 132/364 (36%), Gaps = 36/364 (9%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+S I  +L           +     GSGKT    + + A +   E   
Sbjct: 21  SDLGFETPSPIQQSCIPHLLNG------NDVLGMAQTGSGKTAAFALPLLAQIDPSEKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  + + +      +  + G      R     R     A +++G
Sbjct: 75  QMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGG----QRYDIQLRALKQGAQVVVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 131 TPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMP 190

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I      ++ + +    L+ +  E   A  I 
Sbjct: 191 EPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +NG+  +++AT 
Sbjct: 251 ARTKTGTLD--------ITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S+++  +      + +H++ GR GR       +L   P   +       
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEH 361

Query: 610 VLKN 613
           ++K 
Sbjct: 362 LMKK 365


>gi|37912838|gb|AAR05178.1| putative ATP-dependent RNA helicase [uncultured marine
           proteobacterium ANT8C10]
          Length = 635

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 134/354 (37%), Gaps = 30/354 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
            P++ Q+ AI  IL     KN M        G+GKT   ++ M   +    +       A
Sbjct: 23  KPSEIQQQAIPVILAG---KNIMAA---AQTGTGKTGSFVLPMLEMLHEQAKPYSKNVHA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E +  Y + T I    + G      ++  L++       I++ T  
Sbjct: 77  LVLTPTRELAAQVRESVHSYGKLTNITSTAVFGGAKIFPQKAKLKK----GVDILVATPG 132

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D +    + L  V           L +        ++ MT  P  + L+ ++    +
Sbjct: 133 RLLDLVNQKAVKLDQVQILVLDEADHMLDMGFIHDIKKIIAMT-PPTRQNLLFSATFSPE 191

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN----- 499
           I K+ +   G   ++      N     I+++   + + KK+  +   IEE++        
Sbjct: 192 IKKLAQS-LGDGLVEISAQSPNTTVSKIKQIVYHVDKNKKSDLLAHMIEEEQWDQALVFS 250

Query: 500 -FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +   E+              IHG  +   +   +  FK    ++L+AT V   GID+ 
Sbjct: 251 KTKHGCEKIADYLNAAGIETGTIHGDKTQGARTKALREFKGKFVRVLVATDVAARGIDIS 310

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +   ++  +   +    +H++ GR GR  +  + I L    +S + +  L  ++
Sbjct: 311 NLPFVVNFDMPTYPNDYIHRI-GRTGRAGQEGTAISL----MSSDEHKFLRGIE 359


>gi|73973757|ref|XP_853740.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 43
           [Canis familiaris]
          Length = 646

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 148/439 (33%), Gaps = 43/439 (9%)

Query: 197 KSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI--P 254
           +  P I + F        +   E     R+    + ++   +     R+           
Sbjct: 187 EDLPPIKKNFYRQSETTSSMSQEQVDSWRK--ENNNIMCDDLKEGEKRRIPNPTCKFEDA 244

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
                ++ +   R     PT  Q  A   +LQ +        I     G+GKTL  L+  
Sbjct: 245 FQYYPEVMENFKRAGFQKPTPIQSQAWPIVLQGID------LIGVAQTGTGKTLSYLMPG 298

Query: 315 AAAVE---------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
              ++          G   +++ P   LA Q      KY+      V I  G      R 
Sbjct: 299 FIHLDSQPVIREKRNGPGMLVLTPTRELALQVEAECSKYSYKGLKSVCIYGGG----DRN 354

Query: 366 KALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATA 420
             ++ +  G   III T     D      +    +  +++DE  +           K   
Sbjct: 355 GQIQDLKKG-VDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDMGFEPQIMK--- 410

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLK 476
              +L+   P  +T++ ++     + ++ +       I  V    ++ ++ + + I    
Sbjct: 411 ---ILLDVRPDRQTIMTSATWPYAVRRLAQSYLKAPMIVYVGTLDLVAVSTVKQNIIVTT 467

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESV 533
                     ++     + K   F S     + L         S+  +HG     D+E  
Sbjct: 468 EEEKRSHIQRFLESISSQDKVIVFVSRKAIADHLSSDLILQHVSVESLHGNREQCDRERA 527

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +++FK G  ++LIAT +   G+DV D + +   +        +H++ GR GR       I
Sbjct: 528 LENFKTGKVRILIATDLASRGLDVNDITHVYNYDFPRNIEEYVHRV-GRTGRAGRTGISI 586

Query: 594 LLYHPPLSKNSYTRLSVLK 612
            L      + +   +++L+
Sbjct: 587 TLITRNDWRVAGELINILE 605


>gi|301384847|ref|ZP_07233265.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059212|ref|ZP_07250753.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           K40]
 gi|302130851|ref|ZP_07256841.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|331017330|gb|EGH97386.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 445

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 139/365 (38%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA------AAVEAGGQAV 325
            PT  Q +AI   LQ    +      +    GSGKT   ++ +       A V    +AV
Sbjct: 22  EPTPVQAAAIPLALQGRDLR------VTAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAV 75

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + +++++Q T +   +ITG      +   L ++      I+IGT   
Sbjct: 76  ILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV----PDILIGTPGR 131

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPI---P 432
             + +    L L  V        D     G  + ++    + A     +L +AT      
Sbjct: 132 LLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGL 191

Query: 433 RTLVLTSLGDIDISKI---TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           R ++   L D    ++   +E  +G +            ++V+    ++ +E  +   I 
Sbjct: 192 REMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNW--LLANETYQKAIIF 249

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +++ +R             ++HG     D+++ +D  K G  K+++AT 
Sbjct: 250 T--------NTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATD 301

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV    ++I  +    G   +H++ GR GR       I L          +   
Sbjct: 302 VAARGLDVEGLDMVINFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICHGDWNLMSSVER 360

Query: 610 VLKNT 614
            LK +
Sbjct: 361 YLKQS 365


>gi|222034881|emb|CAP77624.1| Cold-shock DEad box protein A [Escherichia coli LF82]
          Length = 645

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 37  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 90

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 91  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 146

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 147 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 206

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 207 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 262

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 263 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 314

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 315 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 373

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 374 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLGKIQP 428

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 429 TAE---GEELDLETLAAALLKMA 448


>gi|332529740|ref|ZP_08405694.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC
           19624]
 gi|332040761|gb|EGI77133.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC
           19624]
          Length = 506

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 125/358 (34%), Gaps = 30/358 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
           + T  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 40  TMTPIQAQAIPVVLAGQDV------MGAAQTGTGKTAAFSLPLLQRLLKHENASTSPARH 93

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   LA Q  + +K Y + T +   ++ G M    +   L++       +++
Sbjct: 94  PVRALVLLPTRELADQVAQQVKMYAKYTHLRSAVVFGGMDMKPQTLELKK----GVEVLV 149

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D I+    +L  V E        R+           +L        TL+ ++ 
Sbjct: 150 ATPGRLLDHIEAKNAVLNQV-EYVVLDEADRMLDIGFLPDLQRILSHLPKQRTTLLFSAT 208

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
              +I ++      + PI   +   N     +E+    + E  K + +   + +K     
Sbjct: 209 FSPEIKRLASSYL-QNPITIEVARSNATATTVEQHFYSVGEDDKRHALRQVLRDKNLKQA 267

Query: 497 --ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +    R     E      A +HG  S  ++   +D+FK G   LL+ T V   G
Sbjct: 268 FVFVNSKLGCARLARALERDGLKTAALHGDKSQDERLKALDAFKKGEVDLLVCTDVAARG 327

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+ D   +   +        +H++ GR GR   +   +    P   K+      ++K
Sbjct: 328 LDIKDVPAVFNIDIPFNAEDYVHRI-GRTGRAGALGVAVSFVSPRDVKSVAEIEKLIK 384


>gi|312963578|ref|ZP_07778059.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
 gi|311282087|gb|EFQ60687.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
          Length = 628

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 134/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  EPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGHPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q ++  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSQDITALAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G+ ++L+A
Sbjct: 246 HGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSVRILVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|262173110|ref|ZP_06040787.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
 gi|261890468|gb|EEY36455.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
          Length = 412

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 131/337 (38%), Gaps = 30/337 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     Q +++ P
Sbjct: 22  QPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQTLVLLP 75

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +        +    + G + +A ++ AL        +I++ T     D 
Sbjct: 76  TRELAMQVSEVLTHVGTPLGLNTLCLCGGVDKAEQQNALAE----NPNILVATTGRLFDL 131

Query: 390 IQ----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            Q      ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 132 TQSGLSLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTASVRQTVMCSATFSDD 184

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 185 LKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 244

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S  ++E+ +  FKNGT ++LIAT ++  GI +  
Sbjct: 245 AKENADSLTKKLNKAGVVATALHGDKSQAEREAALAEFKNGTTQVLIATDLLARGIHIEQ 304

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             ++I           +H++ GR  R  +    + L 
Sbjct: 305 LPVVINFELPMHAETYVHRV-GRTARAGQQGIALSLV 340


>gi|71736442|ref|YP_272752.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298485028|ref|ZP_07003125.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|71556995|gb|AAZ36206.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298160438|gb|EFI01462.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 625

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|66047019|ref|YP_236860.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|63257726|gb|AAY38822.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|330971079|gb|EGH71145.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 445

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 139/365 (38%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA------AAVEAGGQAV 325
            PT  Q +AI   LQ    +      +    GSGKT   ++ +       A V    +AV
Sbjct: 22  EPTPVQAAAIPLALQGRDLR------VTAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAV 75

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + +++++Q T +   +ITG      +   L ++      I+IGT   
Sbjct: 76  ILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV----PDILIGTPGR 131

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPI---P 432
             + +    L L  V        D     G  + ++    + A     +L +AT      
Sbjct: 132 LLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGL 191

Query: 433 RTLVLTSLGDIDISKI---TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           R ++   L D    ++   +E  +G +            ++V+    ++ +E  +   I 
Sbjct: 192 REMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNW--LLANETYQKAIIF 249

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +++ +R             ++HG     D+++ +D  K G  K+++AT 
Sbjct: 250 T--------NTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATD 301

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV    ++I  +    G   +H++ GR GR       I L          +   
Sbjct: 302 VAARGLDVEGLDMVINFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICHGDWNLMSSVER 360

Query: 610 VLKNT 614
            LK +
Sbjct: 361 YLKQS 365


>gi|320583326|gb|EFW97541.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pichia angusta
           DL-1]
          Length = 533

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 132/384 (34%), Gaps = 53/384 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           L  + +  PT  Q +A+ + L           +   + GSGKTL  LI     +      
Sbjct: 143 LEALGYTEPTPIQRAAVPNGLTGRD------LVGIAETGSGKTLAFLIPSVNYILQLPRL 196

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G   +I+ P   LA Q      K   +    V  + G        + LER      
Sbjct: 197 GRFEGPYVLILVPTRELALQIEREFSK-FASLGFDVISLIGGHSYDEHAEKLER----GV 251

Query: 377 HIIIGTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLT----QKATAPHVL 424
            +II T     D ++         + L++   D     G +  L          +     
Sbjct: 252 EVIIATPGRLVDCLEQQLVSLDRCFFLVMDEADRMIDMGFENDLNKILESLPDGSENPHY 311

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKP-------------AGRKPIKTVIIPINRIDEV 471
           L +  P   T++ T+     I KI+ K                   ++   I ++  DE 
Sbjct: 312 LGSGEPKRTTMMFTATMPPQIEKISAKYLKNPGTVMVGEVGGAVDSVRQEAIQVDDSDEK 371

Query: 472 -IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            ++ L+ VL+ G  +  I   +      NFR   E      E    +   +HG  +   +
Sbjct: 372 RLQMLQKVLTRGIYSPPIIIFV------NFRKTCEMVAEFLEQLGFNAVTMHGSKTQEQR 425

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E  +   K G   +L+AT V   GID+ D S+++            H++ GR GR  +  
Sbjct: 426 EYAIQQIKEGRSDILVATDVAGRGIDIPDVSLVVNFQMAKNIEDYTHRI-GRTGRAGKEG 484

Query: 591 SCILLYHPPLSKNSYTRLSVLKNT 614
           + I  +    +   Y    ++  +
Sbjct: 485 TAITFWSAADADVLYNLKQMITKS 508


>gi|225851664|ref|YP_002731897.1| DEAD-box ATP-dependent RNA helicase YdbR [Brucella melitensis ATCC
           23457]
 gi|256264826|ref|ZP_05467358.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|225640029|gb|ACN99942.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella melitensis ATCC
           23457]
 gi|263095281|gb|EEZ18908.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
          Length = 626

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 148/365 (40%), Gaps = 46/365 (12%)

Query: 272 SPTKSQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGG 322
           + T  Q + +  + L           ++    GSGKT+   +AMA  +        +AG 
Sbjct: 22  TLTAVQNAVLAPETLAS-------DLLVSAQTGSGKTVAFGLAMANTILEDELRFGDAGA 74

Query: 323 Q-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LA Q    ++    +T   +    G M     R+ALER     +HI++G
Sbjct: 75  PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GSHIVVG 130

Query: 382 THALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D I        Q   ++L   DE    G ++ L+           L  A    R
Sbjct: 131 TPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFI---------LGEAPEDRR 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I+++ ++        TV    ++  + I+ + + +   ++ + I   + 
Sbjct: 182 TLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHAD-IDYVAMPVPPHERDHAIINTLL 240

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                N       R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +        LH+  GR GR     +C+L+      +++   
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGTCVLVVPFSRRRSAERL 359

Query: 608 LSVLK 612
           L + K
Sbjct: 360 LHMAK 364


>gi|56090019|gb|AAV70960.1| Vasa [Carassius gibelio]
          Length = 701

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 130/364 (35%), Gaps = 37/364 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 286 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQRLMADGVAASKFSEV 339

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K+   T +   ++ G +   +    +  +  G  +I+
Sbjct: 340 QEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY---TIREVLKG-CNIL 395

Query: 380 IGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L      ++DE  R          +K        M +    +T
Sbjct: 396 CGTPGRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRKLVGSP--GMPSKEDRQT 453

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE- 493
           L+ ++    DI ++         I   +  +      +E+  + + +  K   +   +  
Sbjct: 454 LMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIIQVDQYSKRDQLLDLLRS 513

Query: 494 -----EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +       S   IHG     ++E  +  F+ G C +L+AT
Sbjct: 514 TGTERTMVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALSDFRTGQCPVLVAT 573

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTR 607
           +V   G+D+     ++  +        +H++ GR GR   I   +  ++P   +  + + 
Sbjct: 574 SVAARGLDIEQVQHVVNFDLPSSIDEYVHRI-GRTGRCGNIGRAVSFFNPESDTPLARSL 632

Query: 608 LSVL 611
           + VL
Sbjct: 633 VKVL 636


>gi|7385089|gb|AAF61690.1|AF220365_1 nucleolar RNA helicase II/Gu [Mus musculus]
 gi|148700138|gb|EDL32085.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_a [Mus
           musculus]
          Length = 805

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 143/423 (33%), Gaps = 72/423 (17%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------GQAV 325
             Q      +            I Q   G+GKT    I +   ++ G          Q +
Sbjct: 237 PIQAKTFHHVYSGKD------LIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVL 290

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  +     T+  ++ V    G  P   +   +ER+  G   I++GT   
Sbjct: 291 VLAPTRELANQVSKDFSDITK--KLSVACFYGGTPYGGQ---IERMRSG-IDILVGTPGR 344

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +D +Q  KL        +L  VD+    G   +++              +   P+TL+ 
Sbjct: 345 IKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKD----SEDNPQTLLF 400

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEK 495
           ++     +  + +K       +  +I        I  E L +     ++A  I   I   
Sbjct: 401 SATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVY 460

Query: 496 KESNFR-----SVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                R        +    L ++         +HG +    +E  +  F+NG   +L+AT
Sbjct: 461 SGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVAT 520

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +  +++         + +H+  GR GR      CI  Y            
Sbjct: 521 NVAARGLDIPEVDLVVQSCPPKDVESYIHR-SGRTGRAGRTGVCICFY------------ 567

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
                 ++ + +A+             ++Q    KF          +++ + KDA  +L 
Sbjct: 568 ----QNKEEYQLAQ-------------VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLD 610

Query: 669 QDP 671
             P
Sbjct: 611 SVP 613


>gi|21231720|ref|NP_637637.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768154|ref|YP_242916.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188991291|ref|YP_001903301.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21113422|gb|AAM41561.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573486|gb|AAY48896.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733051|emb|CAP51249.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 458

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 86/460 (18%), Positives = 167/460 (36%), Gaps = 63/460 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + ++  T  Q  ++  ILQ +        I Q   GSGKT    + +   ++     
Sbjct: 17  IDALGYTTLTPIQAQSLPPILQGLDV------IAQAPTGSGKTAAFGLGLLQKLDPALTR 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + ++K       + + ++TG MP   +  +LE        +++
Sbjct: 71  AQALVLCPTRELADQVGKQLRKLATGIPNMKLLVLTGGMPLGPQLASLEA---HDPQVVV 127

Query: 381 GTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    Q+  +           L+L   D     G ++ ++        H          
Sbjct: 128 GTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKH---------- 177

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R  +L S    DI +   +   + P++  +   +   E+ ++   V    ++       +
Sbjct: 178 RQSLLFSATFPDIIRTLARELLKDPVEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLL 237

Query: 493 EEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
               E      N R  V+      + F  S   +HG M   D++ V+  F N +C +L+A
Sbjct: 238 RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY-- 605
           + V   G+DV D + ++            H++ GR  R  +    + L  P  S  +   
Sbjct: 298 SDVAARGLDVEDLAAVVNYELPTDTETYRHRI-GRTARAGKHGLALSLVAPRESARAQAL 356

Query: 606 --------TRLSVLKNTEDGFLI---AEEDLKQ-------RKEGEILG--IKQSGMPKFL 645
                           T     +   A   L+         + G+ILG    ++G+    
Sbjct: 357 EAEHGQPLKWSRAPLATARPAQLPLAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAA 416

Query: 646 IAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           I +  ++   S + IAR      LT       ++G+  R+
Sbjct: 417 IGKIAIYPTRSYVAIARAQVARALTHL-QAGKIKGRRFRV 455


>gi|88860699|ref|ZP_01135336.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas tunicata D2]
 gi|88817294|gb|EAR27112.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas tunicata D2]
          Length = 431

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/382 (20%), Positives = 130/382 (34%), Gaps = 50/382 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA------------AVE 319
            PT  Q  AI  +L           I   + GSGKT    + M              A  
Sbjct: 30  QPTPIQAQAIPSVLAGRD------LIAGANTGSGKTATFALPMLQQLYLQQQGKTSVATN 83

Query: 320 AGGQA--VIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQ 375
            G     +++ P   LA Q    IK Y  +    I    + G +    + +AL     G 
Sbjct: 84  KGNYVAGLVLVPTRELATQVANSIKSYAAHFNGAIKTVAVFGGVSVNAQMQALR----GG 139

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
           + I++ T     D I        +   L+L   D     G  + L   L         LL
Sbjct: 140 SDIVVATPGRLLDLISSNAIKLDKVSTLVLDEADRMLGLGFTEELSQLLALMPAKKQTLL 199

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
            +AT   +   LT     +  +I  + +    +   +  +N+  +      ++     + 
Sbjct: 200 FSATFPLQVQSLTQSLLTNPVEIQVQSSDASTVVQRVFTVNKGAKTELLAHLITEHKWRQ 259

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
             I          N ++  E      E    S  + HG      +  V++ FK G   +L
Sbjct: 260 ALIFV--------NAKNHCEHLAQKLEKRGISAKVFHGDKGQSARTRVLEEFKAGEIDIL 311

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL-----YHPPL 600
           IAT +   G+D+    ++I  N        +H++ GR GR  E+   + L     YH   
Sbjct: 312 IATDIAARGLDIEKLPVVINYNLPRSPADYMHRI-GRSGRAGEVGLALSLIDQDDYHHFS 370

Query: 601 SKNSYTRLSVLKNTEDGFLIAE 622
                 ++ + +    GFL+ E
Sbjct: 371 IIEKKNKIRLERELVPGFLVVE 392


>gi|326773277|ref|ZP_08232560.1| cold-shock DEAD box protein A [Actinomyces viscosus C505]
 gi|326636507|gb|EGE37410.1| cold-shock DEAD box protein A [Actinomyces viscosus C505]
          Length = 865

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/454 (18%), Positives = 157/454 (34%), Gaps = 38/454 (8%)

Query: 176 VEALSRLPVLPEWIEKDLLQ---KKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
            EA      LPE   +D +    +     I E     H P    D +  S  R+      
Sbjct: 85  EEADDVDRDLPEADPEDGIDNSDEDDGVDIDEDEVDGHTPFIDTDADSDSHQRDVERAAS 144

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
                 + +    + ++     + + G + + +      +PT  Q+ AI  +L       
Sbjct: 145 PRDRDKSEVRTAHEDEEITFADLGLPGDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDV-- 202

Query: 293 RMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNT- 348
               +     G+GKT    + +  AV++     QA+++AP   LA Q  E I      + 
Sbjct: 203 ----VGVAQTGTGKTAAFGLPLLDAVDSRDNVVQALVLAPTRELALQSAEAITDMAARSR 258

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-------- 400
            + V  + G  P   +  AL     G A +++GT     D I    L L  V        
Sbjct: 259 GLEVVAVYGGAPYGPQIGAL----KGGAQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEA 314

Query: 401 DEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRK 456
           DE  R G  + ++   +         L +AT  P  + +    L +    +++   +   
Sbjct: 315 DEMLRMGFAEDVETIAESLPADRRTALFSATMPPAIQAVARQHLHEPVQVEVSRPASTVA 374

Query: 457 PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS 516
            +      +    ++    +V+     +A  +  +         +S  E           
Sbjct: 375 TVHQTYAVVPFRHKIGAVSRVLAVTDAEAAIVFVRT--------KSTAEDVAIELAGRGI 426

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
             A I G +   ++E +++  + GT  +L+AT V   G+DV    +++  +      A +
Sbjct: 427 QAAAISGDVPQRERERLVERLRAGTLDVLVATDVAARGLDVDRIGLVVNFDVPREAEAYV 486

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           H++ GR GR       +    P           +
Sbjct: 487 HRI-GRTGRAGRHGEAVTFLTPKEKGKLRQIERL 519


>gi|145632474|ref|ZP_01788208.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
 gi|144986669|gb|EDJ93221.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
          Length = 613

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 132/364 (36%), Gaps = 36/364 (9%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+S I  +L           +     GSGKT    + + A +   E   
Sbjct: 21  SDLGFETPSPIQQSCIPHLLNG------NDVLGMAQTGSGKTAAFALPLLAQIDPSEKHP 74

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  + + +      +  + G      R     R     A +++G
Sbjct: 75  QMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGG----QRYDIQLRALKQGAQVVVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 131 TPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMP 190

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + +    KI         I      ++ + +    L+ +  E   A  I 
Sbjct: 191 EPIRRITKRFMNNPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIF 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +NG+  +++AT 
Sbjct: 251 ARTKTGTLD--------ITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATD 302

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   S+++  +      + +H++ GR GR       +L   P   +       
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNIEH 361

Query: 610 VLKN 613
           ++K 
Sbjct: 362 LMKK 365


>gi|308810286|ref|XP_003082452.1| putative nicotiana eukaryotic (ISS) [Ostreococcus tauri]
 gi|116060920|emb|CAL57398.1| putative nicotiana eukaryotic (ISS) [Ostreococcus tauri]
          Length = 404

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 131/371 (35%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+ A+  I+           I Q   G+GKT +  +A+   ++      Q ++++
Sbjct: 53  KPSAIQQRAVVPIISGRDV------IAQAQSGTGKTSMISLALCQMLDTTSREVQGLVLS 106

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  +          + V    G        + L+       HI+ GT     D
Sbjct: 107 PTRELAVQTEKTALALGNFMNVQVHACIGGRSIGEDIRKLDY----GCHIVSGTPGRVFD 162

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G ++++            V+L++AT     L +T
Sbjct: 163 MIKRRNLRTRGIKILVLDEADEMLNKGFKEQIYDVYRYLPPETQVVLVSATLPNEVLEMT 222

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
                D  +I  K      + IK   + + R +   + L  +       +A   C     
Sbjct: 223 GKFMTDPLRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT--- 279

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+           +++ +HG M   ++E +M+ F+ GT ++LI T +   G
Sbjct: 280 ------KKKVDWLTEKMRQNNFTVSAMHGDMPQKEREEIMNEFRGGTTRVLITTDMWARG 333

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV   S++I  +        +H++ GR GR       I        +            
Sbjct: 334 IDVQQVSLVINYDLPGNRENYIHRI-GRSGRYGRKGVAINFVKEEDVRALRDIEQYYSTQ 392

Query: 615 EDGFLIAEEDL 625
            D   +   D+
Sbjct: 393 IDEMPMNVADM 403


>gi|54294961|ref|YP_127376.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila str. Lens]
 gi|53754793|emb|CAH16280.1| hypothetical protein lpl2040 [Legionella pneumophila str. Lens]
          Length = 468

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 161/415 (38%), Gaps = 59/415 (14%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q  ++  IL++         I Q   GSGKT    +++   ++      QA+++ P 
Sbjct: 35  TPIQMQSLPIILRNED------LIAQAKTGSGKTAAFALSLLNNLKISFFAVQALVLCPT 88

Query: 331 GILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA+Q  + I++       + +  ++G +P   +  +L       AHII+GT       
Sbjct: 89  RELAEQVSQAIRRLACFMPNVKIINLSGGIPMQPQLDSLRH----GAHIIVGTPGRILKH 144

Query: 390 IQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           ++   L L  V     DE  R          +       ++       +TL+ ++    +
Sbjct: 145 LKNTSLDLSQVKALILDEADRMLDMGFFDDIKN------IISVCPKQRQTLLFSATYPEE 198

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-------- 496
           I +++++         V+ P   ID  IE+    +S   + + +   +            
Sbjct: 199 IKRLSKQFMKDPKEVHVVTPPEEID--IEQHFYEVSRHAQKFPLLKSLLLHYQPVSVLIF 256

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +  +  +E  + L     S+IA+ +G M  I+++  +  F N +C +L+AT V   G+D
Sbjct: 257 CNTKQQTIEVTDQLINEGFSAIAL-NGDMEQIERDLAVLRFANKSCSILVATDVAARGLD 315

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN------------S 604
           + + S +I  +        +H++ GR GR       + +  P  ++              
Sbjct: 316 IKELSAVINFDLAFDHDVHIHRI-GRTGRAGSKGIALSIVTPADAQRICAIEDNYPHPIH 374

Query: 605 YTRLSVLKNTEDG--------FLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQP 649
           +  ++ L+N              IA     + + G+ILG   K +G+    I + 
Sbjct: 375 WGNINELENHNTARLVPEMVTLCIASGKKDKIRPGDILGALTKDAGLAGNTIGKI 429


>gi|296201834|ref|XP_002748196.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 3
           [Callithrix jacchus]
          Length = 544

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 128/333 (38%), Gaps = 37/333 (11%)

Query: 307 TLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           TL  L+     +          G   +++AP   LAQQ  +   +Y +  ++    I G 
Sbjct: 75  TLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGG 134

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQ 410
            P+  + + LER       I I T     D ++  K        L+L   D     G + 
Sbjct: 135 APKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEP 190

Query: 411 RLKLT--QKATAPHVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVI 462
           +++    Q       L+ +AT     R L    L D     I   E  A      I  V 
Sbjct: 191 QIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVC 250

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
             + + +++I  ++ ++SE +    +  + +       R   E    +      ++ I H
Sbjct: 251 HDVEKDEKLIRLMEEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-H 302

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR
Sbjct: 303 GDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GR 361

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
             R  +  +    + P   K     +SVL+   
Sbjct: 362 TARSTKTGTAYTFFTPNNIKQVSDLISVLREAN 394


>gi|289677204|ref|ZP_06498094.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 379

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 139/367 (37%), Gaps = 46/367 (12%)

Query: 278 ESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPIGILA 334
           + +I  I+           I Q   G+GKT    + +   ++      QA+I+AP   LA
Sbjct: 1   QQSIPIIMAGHD------MIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELA 54

Query: 335 QQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY- 392
            Q     + Y  Q   + V  + G  P   + KA+       A I++ T     D ++  
Sbjct: 55  LQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN----GAQIVVATPGRLCDHLRRD 110

Query: 393 -------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLTSLGDID 444
                    L+L   DE  + G    L+          ++  A P   +T++ ++     
Sbjct: 111 EKVLATVNHLVLDEADEMLKLGFMDDLE----------VIFKAMPETKQTVLFSATLPQS 160

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV 504
           I  I E+   R P    I    +    IE+  +++   +K   +   +E +        V
Sbjct: 161 IRAIAERHL-RDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDALIMFV 219

Query: 505 ER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                     S  E      A ++G ++   +E V++S K+G   +++AT V   G+DV 
Sbjct: 220 RTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAARGLDVP 279

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
             + +   +  +   + +H++ GR GR       +LL  P         L V++    G 
Sbjct: 280 RITHVFNVDMPYDPESYVHRI-GRTGRAGREGRALLLVTPRE----RRMLQVIERVT-GQ 333

Query: 619 LIAEEDL 625
            +AE  L
Sbjct: 334 KVAEVRL 340


>gi|303287833|ref|XP_003063205.1| dead-box ATP-dependent RNA helicase [Micromonas pusilla CCMP1545]
 gi|226455037|gb|EEH52341.1| dead-box ATP-dependent RNA helicase [Micromonas pusilla CCMP1545]
          Length = 479

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/367 (16%), Positives = 124/367 (33%), Gaps = 36/367 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           SPT  Q  +    LQ          I     GSGKT+  L      + A        G  
Sbjct: 40  SPTPIQAQSWPIALQGYD------LISVAKTGSGKTVGYLFPGIMHIRARANGPRPVGPT 93

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             ++AP   LA Q  E   K+ +   +    + G  P+  + + L         I I T 
Sbjct: 94  VAVLAPTRELATQIQEETAKFGRAIGMFSVCLYGGAPKGMQLRELRS----GPQIAIATP 149

Query: 384 ALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT---PIP 432
               D ++   +        +L   D     G + +++       P     + +   P  
Sbjct: 150 GRLNDFLESGAVNLGSATYVVLDEADRMLDMGFEPQIRKILARAPPARQARSISHWSPCD 209

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
            TL  T+     + ++            +    + +        + +  G +      ++
Sbjct: 210 PTLFFTATWPKAVVRVATAILTNPIQVNIGDTDSLVANKDISQVIEVCGGFQKQQRLMEV 269

Query: 493 EEK------KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                    K   F S     + +        A+IHG     +++ +++ FK+G   +L+
Sbjct: 270 LRNPPAQPLKAIVFCSTKRMCDQIGRSMGGMGAVIHGDKEQRERDYIINQFKSGRVPVLV 329

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ + ++++  +  +     +H++ GR GR            P     +  
Sbjct: 330 ATDVAARGLDIKEVNLVVNFDFPNQIEDYVHRI-GRTGRAGNKGHAHSFIEPGEGNMARK 388

Query: 607 RLSVLKN 613
            + +L++
Sbjct: 389 LIPILRD 395


>gi|224024964|ref|ZP_03643330.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM
           18228]
 gi|224018200|gb|EEF76198.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM
           18228]
          Length = 423

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 127/357 (35%), Gaps = 33/357 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I  IL+          I     G+GKT   L+ +   +  G         +IM
Sbjct: 25  TPVQEHTIPVILEGKD------LIGVAQTGTGKTAAYLLPVLNQLSKGNYPEDAINCIIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA Q  + ++ ++         + G        +  + +  G A ++I T     
Sbjct: 79  APTRELAMQIDQQMEGFSYFMPASSVAVYGGNDGIRFEQEKKGLTLG-ADVVIATPGRLI 137

Query: 388 DS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                  +   K+   I+DE  R        L        + ++   P  R  ++ S   
Sbjct: 138 SHLSLGYVDLSKVSFFILDEADRM-------LDMGFAEDIMQIVKYLPKERQTIMFSATM 190

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
               +   K     P++ V + +++  E I +   +  E +K   I    +E++      
Sbjct: 191 PTKIQQLAKTILTNPVE-VKLAVSKPAEKIIQAAYICYEAQKLGIIESLFKEQQPERVII 249

Query: 501 ----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +  V+      +    ++  +H  +    +E++M  F+NG   +L+AT ++  GID
Sbjct: 250 FASSKIKVKEVTKALKRLKLNVGEMHSDLDQSQREAIMHEFRNGRINMLVATDIVARGID 309

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + D  ++I  +  H     +H++ GR  R       I               + L+ 
Sbjct: 310 IDDIRLVINYDVPHDSEDYVHRI-GRTARANNDGCAITFVSETEQNKFKQIENFLEK 365


>gi|154497003|ref|ZP_02035699.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC
           29799]
 gi|150273402|gb|EDN00530.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC
           29799]
          Length = 400

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/339 (18%), Positives = 130/339 (38%), Gaps = 34/339 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPI 330
           T  Q  AI   ++          I +   G+GKT    I M   ++      QA+++AP 
Sbjct: 36  TPVQAGAIPYFMEWKDV------IAKAPTGTGKTFAFGIPMVEHIDPESDAVQALVLAPT 89

Query: 331 GILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + ++   +    +    + G  P   +   L++       I++ T     D 
Sbjct: 90  RELALQIQDELRDLCEFKEGVRSVCLYGGAPIEKQITTLKK----HPQIVVATPGRLMDH 145

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLTS 439
           ++   +        +L   D     G    +   L Q  +  ++ L +AT     + ++ 
Sbjct: 146 MKRRTVKLDKVETVVLDEADRMLDMGFIHDVTRILDQIKSRKNLGLFSATISREVMDISW 205

Query: 440 LGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +   D  +I  +P    +  I+   I +    + +E +  +L+ G     I         
Sbjct: 206 VYQRDPVEIVVRPDEENKPDIQQYRIDLEGRGDKLETMVALLTHGGYERAI-------AF 258

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            N +++ +R + L +    +   IHG +    +E  + +F+ G  ++L+AT V   G+D+
Sbjct: 259 CNTKNMTDRLSGLLQMRGITAQAIHGDIQQRIREKTLQAFREGKMRVLVATDVAARGLDI 318

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            D  ++   +        +H++ GR GR +       L 
Sbjct: 319 DDVDVVFNYDVPDEIEYYIHRI-GRTGRAKRHGVAYSLV 356


>gi|116748890|ref|YP_845577.1| DEAD/DEAH box helicase domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697954|gb|ABK17142.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 471

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 123/359 (34%), Gaps = 39/359 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQA 324
           PT  Q+ A+  IL           +     G+GKT    + +   +        +   +A
Sbjct: 24  PTPIQQQAVPVILDGKDV------LAGAQTGTGKTAGFALPLLQLLSKRPRTKGKTSVRA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E +  Y +   +   ++ G +    +   L R       I++ T  
Sbjct: 78  LILTPTRELAAQVEESVASYGKYLPLKAAVVHGGVNINPQIAKLRR----GIDILVATPG 133

Query: 385 LFQDSIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT--PIP 432
              D +Q   L L  V        D     G     R  L         LL  AT     
Sbjct: 134 RLLDHVQQRTLDLCAVEILVLDEADRMLDMGFIRDIRKILALLPVRRQNLLFFATFSDEI 193

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL    L    + +   +    + +  +I P++R+ +      ++ S   +   +  + 
Sbjct: 194 KTLAEDLLRSPVLIETERRNTPAESVAQLIHPVDRVRKRELLSFLIGSNNWRQVLVFTRT 253

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +   +R     EH     A IH   S   +   +  FK+G  ++L+AT +  
Sbjct: 254 --------KHGADRLTRQLEHDGIRAAAIHSNKSQATRTRSLADFKHGDVRVLVATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            G+D+     ++           +H++ GR GR E   + I L      +       +L
Sbjct: 306 RGLDIDHLPHVVNFELPSVSRDYVHRI-GRTGRAERSGTAISLVSIDEREQLKEIERLL 363


>gi|28872183|ref|NP_794802.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213971879|ref|ZP_03399980.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
 gi|301385283|ref|ZP_07233701.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato Max13]
 gi|28855437|gb|AAO58497.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213923363|gb|EEB56957.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
 gi|331015971|gb|EGH96027.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 629

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|1170511|sp|P41382|IF410_TOBAC RecName: Full=Eukaryotic initiation factor 4A-10; Short=eIF-4A-10;
           AltName: Full=ATP-dependent RNA helicase eIF4A-10
 gi|475213|emb|CAA55642.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
 gi|475216|emb|CAA55641.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
          Length = 413

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 129/346 (37%), Gaps = 39/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS----GVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            ++   L        +L   DE    G + ++                 P  +  V ++ 
Sbjct: 172 MLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDI---------FQLLPPKIQVGVFSAT 222

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKKES- 498
              +  +IT K    KP++ ++   +   E I++  V +  E  K   +C   E    + 
Sbjct: 223 MPPEALEITRKFMN-KPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQ 281

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  
Sbjct: 282 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR 341

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV   S++I  +        LH++ GR GR       I      
Sbjct: 342 GIDVQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTKD 386


>gi|302186251|ref|ZP_07262924.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae 642]
          Length = 629

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|298385617|ref|ZP_06995175.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
 gi|298261758|gb|EFI04624.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
          Length = 413

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/356 (19%), Positives = 123/356 (34%), Gaps = 31/356 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE AI  IL+          I     G+GKT   L+ +   +  GG        VIM
Sbjct: 25  TPIQEQAIPIILEGKD------LIAVAQTGTGKTAAFLLPILNKLSEGGHPEDAINCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ ++         + G        +  + +  G A ++I T     
Sbjct: 79  SPTRELAQQIDQQMEGFSYFMPASSVAVYGGNDGILFEQQKKGLTLG-ADVVIATPGRLI 137

Query: 388 DS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                  +   K+   I+DE  R        L        + ++   P  R  ++ S   
Sbjct: 138 AHLSLGYVDLSKVSYFILDEADRM-------LDMGFYEDIMQIVKYLPKERQTIMFSATM 190

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
               +   K     P +  +      D++I+   V     K         +E  E     
Sbjct: 191 PAKIQQLAKTILNNPAEIKLAVSRPADKIIQAAYVCYENQKLGIIRSLFTDEVPERVIIF 250

Query: 501 ---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +  V+      +    ++  +H  +    +E VM  FK G   +L+AT ++  GID+
Sbjct: 251 ASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKAGRINILVATDIVARGIDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            D  ++I  +  H     +H++ GR  R       +         N  +  + L+ 
Sbjct: 311 DDIRLVINFDVPHDSEDYVHRI-GRTARANNDGVALTFISEKEQSNFKSIENFLEK 365


>gi|221197472|ref|ZP_03570519.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M]
 gi|221204145|ref|ZP_03577163.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2]
 gi|221176311|gb|EEE08740.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2]
 gi|221184026|gb|EEE16426.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M]
          Length = 464

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/460 (17%), Positives = 166/460 (36%), Gaps = 60/460 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +++   L           I Q   GSGKT    +A+ + ++A    
Sbjct: 22  LEQLGYVDMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLSRLDARRFD 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+ P   LA Q  + +++  +    + V  + G  P   + ++LE      AHI++
Sbjct: 76  VQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH----GAHIVV 131

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 132 GTPGRIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARQ------CPPTRQTL 185

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   +   
Sbjct: 186 LFSATYPDGIAKLSQQFLRNP--KEVKLEERHDDSKIRQRFYEVTETERLHAVGMLLNHY 243

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 244 RPVSTIAFCNTKQQCRDLIDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 304 VAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQAGWALSLASMDEMGRVGAIEQ 362

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILG--IKQSGMPKFLIA 647
             K   +   ++              E L+           G++LG     +G     I 
Sbjct: 363 AQKRDVEWRPLSELTPASDAPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIG 422

Query: 648 QP--ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +       + + + R  A   L +  +   ++G+ +++ L
Sbjct: 423 KINVTEFSTYVAVERGIAHDALRKL-NAGKIKGKRVKVRL 461


>gi|26368308|dbj|BAB26817.2| unnamed protein product [Mus musculus]
          Length = 832

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 143/423 (33%), Gaps = 72/423 (17%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------GQAV 325
             Q      +            I Q   G+GKT    I +   ++ G          Q +
Sbjct: 264 PIQAKTFHHVYSGKD------LIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVL 317

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  +     T+  ++ V    G  P   +   +ER+  G   I++GT   
Sbjct: 318 VLAPTRELANQVSKDFSDITK--KLSVACFYGGTPYGGQ---IERMRSG-IDILVGTPGR 371

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +D +Q  KL        +L  VD+    G   +++              +   P+TL+ 
Sbjct: 372 IKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKD----SEDNPQTLLF 427

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEK 495
           ++     +  + +K       +  +I        I  E L +     ++A  I   I   
Sbjct: 428 SATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVY 487

Query: 496 KESNFR-----SVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                R        +    L ++         +HG +    +E  +  F+NG   +L+AT
Sbjct: 488 SGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVAT 547

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +  +++         + +H+  GR GR      CI  Y            
Sbjct: 548 NVAARGLDIPEVDLVVQSCPPKDVESYIHR-SGRTGRAGRTGVCICFY------------ 594

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
                 ++ + +A+             ++Q    KF          +++ + KDA  +L 
Sbjct: 595 ----QNKEEYQLAQ-------------VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLD 637

Query: 669 QDP 671
             P
Sbjct: 638 SVP 640


>gi|33598402|ref|NP_886045.1| ATP-dependent RNA helicase DbpA [Bordetella parapertussis 12822]
 gi|33574531|emb|CAE39177.1| probable ATP-dependent RNA helicase [Bordetella parapertussis]
          Length = 462

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/460 (17%), Positives = 171/460 (37%), Gaps = 66/460 (14%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---G 322
           + + F   T  Q  ++  IL+          I Q   GSGKT    + +   ++      
Sbjct: 20  QGLGFEQMTPIQAQSLPLILEGRD------LIAQAKTGSGKTAAFGLGVLQNLDVNRLAP 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+++ P   LA Q  + +++  +    + V  + G      + ++L R      H+++G
Sbjct: 74  QALVLCPTRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLAR----GTHLVVG 129

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    QD +    L        +L   D     G    +                    +
Sbjct: 130 TPGRIQDHLARGSLDLSTLNTLVLDEADRMVDMGFYDDIAAIASHCPAR---------RQ 180

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++    +I K++ +         V          IE+L   + EG++   +   + 
Sbjct: 181 TLLFSATYPDNIRKLSARFLRNPAEIKV--EAQHDASRIEQLFFEIDEGQRLDAVAALLA 238

Query: 494 EKKESNFRSVVE---RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             + ++  +      R + L E   +   S   ++G +   +++ ++  F N +C +L+A
Sbjct: 239 HFRPASTLAFCNTKIRSHDLVERLRAQGISAEALNGDLEQRERDEILIQFANQSCAVLVA 298

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS--- 604
           T V   G+D+ +   +I  +        +H++ GR GRG++    + L  P   + +   
Sbjct: 299 TDVAARGLDIQNLGAVINVDVTKDTEVHVHRI-GRSGRGDQKGLALSLCSPEEMRWANLI 357

Query: 605 ---------YTRLSVLKNTEDGFLIA-EEDLKQRK-------EGEILG--IKQSGMPKFL 645
                    +  L  L+   D  L A    L  +         G++LG      G+    
Sbjct: 358 EQYQGAPLKWADLGSLRPKSDRPLRAPMITLCIQGGKKDKLRPGDLLGALTGDGGLAFEQ 417

Query: 646 IA--QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           +        ++ + + R+ AK    +  + ++++G+  R+
Sbjct: 418 VGKINITEFNAYVALDRQVAKQAFARLSN-SNIKGRRFRM 456


>gi|260564054|ref|ZP_05834540.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260154070|gb|EEW89162.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
          Length = 510

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 142/393 (36%), Gaps = 40/393 (10%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R   D   A  +  + + K+        + + G + + +       P   Q  AI   L
Sbjct: 64  RRFKADRECAVPLKEIELTKENTGG-FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQL 122

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
           +          +     GSGKT    + +   +            +A+I+AP   LA Q 
Sbjct: 123 EGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQI 176

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+  +++  I   ++ G + +  + K +         ++I T     D +       
Sbjct: 177 EQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATPGRLTDLMRDGLVDL 232

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISK 447
            Q   L+L   D     G    +K   KAT       L +AT       L      D  +
Sbjct: 233 SQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVR 292

Query: 448 ITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P G     I  V+ P+   ++      ++     ++  +  + +   ++  R    
Sbjct: 293 VEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGADAVVRH--- 349

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 E     +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV   S ++ 
Sbjct: 350 -----LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +        +H++ GR GR     + I LY P
Sbjct: 405 YDLPDEPETYVHRI-GRTGRNGASGASITLYDP 436


>gi|330969509|gb|EGH69575.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 442

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 134/352 (38%), Gaps = 40/352 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + +PT  Q  AI  +L           +     G+GKT    + +   +   G  
Sbjct: 16  LEALGYQTPTPVQTQAIPPVLAGRD------LMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+++AP   LA Q +E I++Y ++  +      G +    +   L R      
Sbjct: 70  VAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRR----GV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLTQK--ATAPHVLLM 426
            +++ T     D     ++++ +L  +I+DE  R    G  + L+            LL 
Sbjct: 126 DVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLF 185

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKK 484
           +AT      +L +    D   I   P       +K  ++ +++  +      + +   KK
Sbjct: 186 SATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKA----DLFIHLMKK 241

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             W    +  K       +V+R  +L  +       IHG      ++  +D FK+   K+
Sbjct: 242 HRWGQVLVFAKTRVGVDQLVDRLQALGMNADG----IHGDKPQATRQRALDRFKSNEVKI 297

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           L+AT V   G+D+ D   ++  +        +H++ GR GR       I L 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGLTGEAISLV 348


>gi|330878076|gb|EGH12225.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 629

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|193664366|ref|XP_001952053.1| PREDICTED: eukaryotic initiation factor 4A-like [Acyrthosiphon
           pisum]
          Length = 411

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/361 (20%), Positives = 137/361 (37%), Gaps = 40/361 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ AI   ++          I Q   G+GKT    I++   ++      QA+I+A
Sbjct: 60  KPSAIQQRAILPCIKGHDV------IAQAQSGTGKTATFSISILQQIDTSLNECQALILA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + +       +       G        + L+      +H+++GT     D
Sbjct: 114 PTRELAQQIQKVVIALGDFMKADCHACIGGTNVRDDMRKLDT----GSHVVVGTPGRVYD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I    L        +L   DE    G + ++K   K     +         + ++L++ 
Sbjct: 170 MIARKSLRTQFIKIFVLDEADEMLSRGFKDQIKEVFKFLEEDI---------QVILLSAT 220

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+  ++     R P++ ++       E I++  + +  E  K   +C   +      
Sbjct: 221 MPEDVLDVSTHFM-RNPVRILVQKEELTLEGIKQFYINVTKEEWKFDTLCDLYDTLSITQ 279

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  VE         T +++ +HG M    +E +M  F++G+ ++LI T ++  
Sbjct: 280 AVIFCNTRRKVEWLTENMRLKTFTVSAMHGEMDQRQRELIMRQFRSGSSRVLITTDLLAR 339

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GIDV   S++I  +        +H++ GR GR       I        K +   +    N
Sbjct: 340 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFITED-DKRAMKDIESFYN 397

Query: 614 T 614
           T
Sbjct: 398 T 398


>gi|237810939|ref|YP_002895390.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
 gi|237503374|gb|ACQ95692.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
          Length = 488

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 130/369 (35%), Gaps = 42/369 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
             + ++ PT  Q  AI  +L           +     G+GKT    + +   + A     
Sbjct: 17  NELGYTQPTPIQAQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHAFYAEN 70

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             I++ T     D +Q           L+L   D     G    +K  L +       LL
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLL 186

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L  + L    + ++  +    + I   I P++R  +      ++     
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNW 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  +         +    R          S   IHG  S   +   +  FK+ T +
Sbjct: 247 FQVLVFTRT--------KHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQ 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT +   GID+     ++  +  +     +H++ GR GR       + L      + 
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKQL 357

Query: 604 SYTRLSVLK 612
                 ++K
Sbjct: 358 LRDIERLIK 366


>gi|261364093|ref|ZP_05976976.1| ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996]
 gi|288567659|gb|EFC89219.1| ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996]
          Length = 471

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/377 (17%), Positives = 134/377 (35%), Gaps = 47/377 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q +AI   L           +     G+GKT   ++     ++    A        
Sbjct: 25  PTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHP 78

Query: 325 ---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++ P   LA Q  + ++ Y +N  +   ++ G +    +   L         I++ 
Sbjct: 79  VRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRAGCE----IVVA 134

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-- 429
           T     D ++           ++L   D     G     R  +         LL +AT  
Sbjct: 135 TVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATFA 194

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P  R L    +   +I ++  +      ++  II ++ + +     ++++        + 
Sbjct: 195 PPIRKLAKDFMNAPEIVEVAAQNTTSANVEQHIIAVDALKKRNLLERLIVDLQMNQVIVF 254

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + ++  +   R +V R          +   IHG  S   +   +++FK G+ ++L+AT 
Sbjct: 255 CKTKQSVDQVTRDLVRR--------NLAAQSIHGDKSQQSRLETLNAFKEGSLRVLVATD 306

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +   +I           +H++ GR GR       I L    + K       
Sbjct: 307 VAARGLDIAELPFVINYELPTQPEDYVHRI-GRTGRAGADGVAISL----MDKTEQKMFE 361

Query: 610 VLKNTEDGFLIAEEDLK 626
            +K    G  +A E ++
Sbjct: 362 AIKELT-GNDLAVERIE 377


>gi|205352662|ref|YP_002226463.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272443|emb|CAR37330.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627728|gb|EGE34071.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 457

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 137/358 (38%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVTLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKETVSLDAL-HILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   ++PI+  I  ++ +   IE+     S  +K   +   + + +    
Sbjct: 187 WPEAIAAISGR-VQQQPIRIEIDTVDAL-LAIEQQFFETSAHEKISLLQTLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELLVNYELAWDPEVHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQ 361


>gi|167761792|ref|ZP_02433919.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
           43183]
 gi|167700298|gb|EDS16877.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
           43183]
          Length = 372

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/360 (18%), Positives = 135/360 (37%), Gaps = 39/360 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------EAGGQAVI 326
           PT  Q  AI   L           +     G+GKT    I +   +      +   +A+I
Sbjct: 24  PTPIQVKAIPAALTGKD------ILGCAQTGTGKTAAFAIPIIQHLQVLKNRDKSIKALI 77

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA Q  E I  Y + TQ+   +I G + Q  +   L +       I++ T    
Sbjct: 78  LTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLHK----GVDILVATPGRL 133

Query: 387 QD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
            D      I    +   ++DE  R      +   +       LL       +TL  ++  
Sbjct: 134 LDLMNQGYIHLDNVRHFVLDEADRMLDMGFIHDIK------RLLPKLPKEKQTLFFSATM 187

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--- 498
              I  +T     ++P+K  I P +   + IE+    + + +K+  +   + + +     
Sbjct: 188 PDTIIALTNS-LLKQPVKITITPKSSTVDTIEQTIYFVEKKEKSKLLISILHKTEGQSVL 246

Query: 499 ---NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   +R   +          IHG  S   ++S +++FK G  +++IAT +   GI
Sbjct: 247 VFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMIATDIAARGI 306

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+ +  ++I  +        +H++ GR GR   + + +       S+     ++ ++   
Sbjct: 307 DINELPLVINYDLPDVPETYVHRI-GRTGRAGNLGTALTFC----SQEERKLVNDIQKLT 361


>gi|157146569|ref|YP_001453888.1| ATP-dependent RNA helicase RhlE [Citrobacter koseri ATCC BAA-895]
 gi|157083774|gb|ABV13452.1| hypothetical protein CKO_02330 [Citrobacter koseri ATCC BAA-895]
          Length = 454

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 131/362 (36%), Gaps = 38/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---------EAGG 322
            PT  Q+ AI  +L+          +     G+GKT    + +   +             
Sbjct: 23  EPTPIQQQAIPAVLEGRD------LMASAQTGTGKTAGFTLPLLQHLITQQPHAKGRRPV 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E ++ Y++   I   ++ G +    +   L     G   +++ T
Sbjct: 77  RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLR----GGVDVLVAT 132

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D     +++  ++ ++++DE  R      +           +L    P  + L+ 
Sbjct: 133 PGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDI------RRVLAKLPPKRQNLLF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    DI  + EK     P++  +   N   E + +    + + +K   +   I +   
Sbjct: 187 SATFSDDIKALAEK-LLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNW 245

Query: 498 SN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F       N L E         A IHG  S   +   +  FK+G  ++L+AT + 
Sbjct: 246 QQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ +   ++     +     +H++ GR GR       + L      K       +L
Sbjct: 306 ARGLDIEELPHVVNYELPNVPEDYVHRI-GRTGRAAATGEALSLVCVDEHKLLRDIEKLL 364

Query: 612 KN 613
           K 
Sbjct: 365 KK 366


>gi|119475471|ref|ZP_01615824.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
 gi|119451674|gb|EAW32907.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
          Length = 459

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 90/460 (19%), Positives = 174/460 (37%), Gaps = 64/460 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L+ + +   T  Q+ ++  +L           I +   GSGKT    I +   +     G
Sbjct: 18  LQQLGYEKMTPIQQQSLPLVLAG------SDIIAKAKTGSGKTAAFGIGLLTKINPRDFG 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++ P   L+ Q    I++  +  Q I V ++ G      +  +LE      AHI++
Sbjct: 72  TQTMVICPTRELSTQVATEIRRLARYQQNIKVVVLCGGQSIGPQIGSLEH----GAHIVV 127

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
           GT    +D ++   L        +L   D     G        + +       LL +AT 
Sbjct: 128 GTPGRIKDHLRKKTLSLSRLGILVLDEADRMLDMGFYSDIETIIHEMPDDRQTLLFSATY 187

Query: 431 IPRTLVLTSLGDIDISKIT-EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK-AYWI 488
             +   L+S       +I+ E   G + I   +   ++ + +    +++++   + A   
Sbjct: 188 PDKIKTLSSSFQRSPVEISVESVRGNEKIHQQLFICDKRERLAGLQRLLMNYPIESAVIF 247

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C  I        + V E  + L +    S   IHG +   D++ V+  F N +C LL+AT
Sbjct: 248 CNTI--------KLVKEVCDYLVDIGI-SAKAIHGDLEQRDRDQVLIQFANHSCSLLVAT 298

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ D   +I           +H++ GR GR  +      L+        +  +
Sbjct: 299 DVAARGLDIEDLPAVINFELPREADVYIHRI-GRTGRAGKEGLAFSLFTDSEKYR-FDAI 356

Query: 609 SVLKNTEDGF---------------------LIAEEDLKQRKEGEILG--IKQSGMPKFL 645
           S L+  +  F                      I+     + + G+I+G    ++GM   +
Sbjct: 357 STLQENKLNFESIGVLKDIDRQLAAPPMVTLCISGGRKDKFRPGDIVGALTGEAGMDGSV 416

Query: 646 IAQPEL--HDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           I +  +    S + I R  A   L    +   ++G+ ++I
Sbjct: 417 IGKISVLDFVSYVAIERHAANDALRGL-EQGKIKGRKVKI 455


>gi|81242624|gb|ABB63334.1| inducible ATP-independent RNA helicase [Shigella dysenteriae Sd197]
          Length = 646

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 168/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 38  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 91

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      + +AL +       I++
Sbjct: 92  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGQ----QIVV 147

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 263

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 264 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 315

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 316 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 374

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 375 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 429

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 430 TAE---GEELDLETLAAALLKMA 449


>gi|189207078|ref|XP_001939873.1| ATP-dependent RNA helicase fal1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|330936277|ref|XP_003305321.1| hypothetical protein PTT_18129 [Pyrenophora teres f. teres 0-1]
 gi|187975966|gb|EDU42592.1| ATP-dependent RNA helicase fal1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|311317725|gb|EFQ86604.1| hypothetical protein PTT_18129 [Pyrenophora teres f. teres 0-1]
          Length = 399

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 128/344 (37%), Gaps = 39/344 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           SP+  Q  AI  + +          I Q   G+GKT    I++   ++      QA++++
Sbjct: 47  SPSAVQSRAIVQVCKGRDT------IAQAQSGTGKTATFSISILQVIDTAVRETQALVLS 100

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G        + L+       H++ GT     D
Sbjct: 101 PTRELATQIQSVIMGLGDYMNVQCHACIGGTNVGEDIRKLDYGQ----HVVSGTPGRVAD 156

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L        +L   DE    G ++++    +            P  + +V+++ 
Sbjct: 157 MIRRRNLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLP---------PATQVVVVSAT 207

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK--- 496
              D+ ++T K     P++ ++       E +++  + +  E  K   +C   +      
Sbjct: 208 LPYDVLEMTTKFMT-DPVRILVKRDELTLEGLKQYFIAIEKEEWKFDTLCDLYDTLTITQ 266

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++ +HG M   +++S+M  F+    ++LI+T V   
Sbjct: 267 AVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQRERDSIMQDFRQANSRVLISTDVWAR 326

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           GIDV   S++I  +        +H++ GR GR       I    
Sbjct: 327 GIDVQQVSLVINYDLPSNRENYIHRI-GRSGRFGRKGVAINFVT 369


>gi|167835531|ref|ZP_02462414.1| putative ATP-dependent RNA helicase rhlE [Burkholderia
           thailandensis MSMB43]
          Length = 402

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 129/369 (34%), Gaps = 42/369 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------- 318
             + ++ PT  Q  AI  +L           +     G+GKT    + +   +       
Sbjct: 17  NELGYTQPTPIQAQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHTFYAEN 70

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSAVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             I++ T     D +Q           L+L   D     G    +K  L +       LL
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLL 186

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L  + L    + ++  +    + I   I P++R  +      ++     
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNW 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  +         +    R          S   IHG  S   +   +  FKN T +
Sbjct: 247 FQVLVFTRT--------KHGANRLAEQLAKDGISAMAIHGNKSQSARTRALSEFKNSTLQ 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT +   GID+     ++  +  +     +H++ GR GR       + L      + 
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKQL 357

Query: 604 SYTRLSVLK 612
                 ++K
Sbjct: 358 LRDIERLIK 366


>gi|222149464|ref|YP_002550421.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
 gi|221736447|gb|ACM37410.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
          Length = 484

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 124/361 (34%), Gaps = 27/361 (7%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + F  PT  Q   I  ++           I     G+GKT    + +   +      
Sbjct: 33  LTQLGFETPTPIQAQGIPVVMAGRD------LIGLAQTGTGKTAAFGLPIIELLMKDERR 86

Query: 322 -----GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 + +I+AP   L  Q  + ++ + + T I +  + G      ++  LER      
Sbjct: 87  PDNRTTRTLILAPTRELVNQIGDNLRSFIRKTPIKINQVVGGASINKQQLQLER----GT 142

Query: 377 HIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
            I++ T     D I    + L  V         Q L L        +  M      +TL+
Sbjct: 143 DILVATPGRLLDLISRNAISLRAVTHLVLDEADQMLDLGFIHDLRKIAKMVPA-KRQTLL 201

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     I+ +            V  P    D+V + +  V  +  K   +   + +  
Sbjct: 202 FSATMPKAIADLAGSFLNNPVTVEVSPPGKAADKVEQYVHFVNGQNHKTELLKKTLADHP 261

Query: 497 ESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +   E+     E    S+A IHG  S   +E  +  F++G+ + LIAT V
Sbjct: 262 DGRSIVFLRTKHGAEKLMKHLEITGFSVASIHGNKSQGQRERALKGFRDGSIRTLIATDV 321

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GID+   S +   +      A +H++ GR  R       I    P  ++       +
Sbjct: 322 AARGIDIPAVSHVFNYDLPEVPDAYVHRI-GRTARAGRDGIAIAFCGPDEARLLRDIERL 380

Query: 611 L 611
           +
Sbjct: 381 M 381


>gi|110638219|ref|YP_678428.1| ATP-dependent RNA helicase protein [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280900|gb|ABG59086.1| ATP-dependent RNA helicase protein [Cytophaga hutchinsonii ATCC
           33406]
          Length = 413

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 134/373 (35%), Gaps = 42/373 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------AV 325
           PT  Q  +I  IL           +     G+GKT   +I +   +    +        +
Sbjct: 24  PTDIQFKSIPPILAGEDV------LAIAQTGTGKTAAFVIPVLNTLINVKKSEHTDISCL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           +MAP   LA Q  E  KK    T++    ITG +    +   +    +G   I++ T   
Sbjct: 78  VMAPTRELAVQISEVFKKIGAYTRLRTVCITGGV---EQEAQIAAADYG-IDILVATPGR 133

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D I            L+L   D     G  + ++  +K               +TL  
Sbjct: 134 MFDLIYQKHIKITRVKILVLDEADHMLDLGFIKDIQDVKKFLPAR---------HQTLFF 184

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++  + +I K+      + PI+  I P +R+ + I      +    K +++   ++E  E
Sbjct: 185 SATINEEIKKLAYS-LVKNPIRIQIAPKDRVSKNITHSVAFIGMDDKRFFLERLLKEHPE 243

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           S        +   +R  +  E        +HG      +++ MD+FKNGT  +LIAT + 
Sbjct: 244 SKVIVFVRTQVRADRVQAAMERVGLKSVTMHGGKEQQARDAAMDAFKNGTVHVLIATDIS 303

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+     ++  +        +H++ GR GRG      I                 L
Sbjct: 304 ARGIDIAGVEYVVNYDMPEVAENYVHRV-GRTGRGVSKGFAISFCSMEEKPVLDEVEEFL 362

Query: 612 KNTEDGFLIAEED 624
               +   I  +D
Sbjct: 363 GKEINVIEITGKD 375


>gi|325104434|ref|YP_004274088.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324973282|gb|ADY52266.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 445

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/378 (19%), Positives = 140/378 (37%), Gaps = 37/378 (9%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
                +I   I       PT  QE AI  IL           +     G+GKT   ++ M
Sbjct: 8   FKFNRQILNAIEEAGYTQPTPIQEKAIPPILNGQDV------LGIAQTGTGKTAAYVLPM 61

Query: 315 AAAVE----AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
              ++       +A+I+AP   LA Q  E +K +++ T +   ++ G +    +   L +
Sbjct: 62  IMKLKFAQGDDIRALILAPTRELALQIEENVKIFSKYTDLRSVVVFGGIGPKAQADQLAK 121

Query: 371 IAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
                A I+I T   F D      I   KL  +++DE  +      +    K      +L
Sbjct: 122 ----GADILIATPGRFMDLYLDGHIVTKKLQFLVLDEADKMMDMGFMPQINK------VL 171

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE-GKK 484
                  + L+ ++     + +++E      P K  + P     E +E+    +     K
Sbjct: 172 EIVPKKRQNLLFSATMSEKVERLSENFLLW-PTKVEVTPQATPAETVEQELYFVPNLKTK 230

Query: 485 AYWICPQIEEKKESNFRSVVER--------FNSLHEHFTSS-IAIIHGRMSDIDKESVMD 535
              +   +E+  + +   +  R        +  L   F  + + ++H       + + ++
Sbjct: 231 INLLKIFVEDDPDVSKLIIFCRTRVVAENVYRFLLRRFNENHVKVLHANKGQNTRINSIN 290

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SFKN   ++L+AT V   GIDV   S +I           +H++ GR GR       I  
Sbjct: 291 SFKNDEVRILVATDVAARGIDVSSVSHVINFEVPVVYEDYVHRI-GRTGRAFSQGKAITF 349

Query: 596 YHPPLSKNSYTRLSVLKN 613
            +P    +      +++ 
Sbjct: 350 CNPAEEYSIRKIEKLIRQ 367


>gi|167041390|gb|ABZ06143.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
           HF4000_005K23]
          Length = 427

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/341 (20%), Positives = 135/341 (39%), Gaps = 33/341 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQAVIMAPI 330
           PT  Q  AI   L           +     G+GKTL   IA    +  + G  A+I+ P 
Sbjct: 25  PTPIQAQAIPPALLGKD------ILGTAQTGTGKTLCYGIACINKLLNDRGSNALIICPT 78

Query: 331 GILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + +    +NT  I   ++ G      + + L++    +  +IIGT     D 
Sbjct: 79  RELAVQVGDVLNGLIENTMNIKSAVLIGGESMQKQLRQLQK----RPRLIIGTPGRLNDH 134

Query: 390 IQYYKLIL-----VIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           ++   L L     +++DE  R      +   +       +L       +TL+ ++    +
Sbjct: 135 LKRKSLKLHQSYFLVLDETDRMLDMGFIPQVE------QILKFVPKKHQTLLFSATLPQN 188

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------ES 498
           I KITE+     PI+  +         I++  + +SEG K   +  ++ ++K        
Sbjct: 189 ILKITERYLN-DPIRIRVGSTTTPISKIKQEVIQVSEGDKYNKLQEELYKRKGSILLFVK 247

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             R+  +  + LH+        +HG +    ++  + +F++G  ++LI+T +   G+DV 
Sbjct: 248 TKRNADKMADRLHDDGH-RCDCMHGNLRQSKRQRTLIAFRSGKIRILISTELASRGLDVP 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +I  +        +H++ GR  R       +    P 
Sbjct: 307 SIQHVINYHLPQVPEDFIHRI-GRTARAGAEGCALTFITPN 346


>gi|148613135|gb|ABQ96192.1| vasa [Melipona scutellaris]
 gi|205318889|gb|ACI02436.1| vasa [Melipona quadrifasciata]
          Length = 624

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 129/372 (34%), Gaps = 42/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
            PT  Q+ A+  I   M+ ++ M        GSGKT    + +   +             
Sbjct: 216 KPTPVQKHALPII---MNGRDLM---ACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTY 269

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q VI++P   L  Q ++ I K++ N+ +   +  G     H+R  L        HI+
Sbjct: 270 CEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKL----SAGCHIL 325

Query: 380 IGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T     D ++     +  +  +++DE  R      L   +K        M      +T
Sbjct: 326 VATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHET--MVPLGERQT 383

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    ++  +  +         V I      +V E+    ++  KK   +   +E 
Sbjct: 384 LMFSATFPDEVHHLARRFLNNYLFLAVGIVGGARSDV-EQNFCEVARNKKKDLLKEILER 442

Query: 495 KKE----------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           + +             +   +               IHG      +E  +  FK+G   +
Sbjct: 443 ENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSI 502

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT V   G+D+ + S +I  +        +H++ GR GR          + P      
Sbjct: 503 LVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRI-GRTGRVGNRGRATSFFDPEEDAPL 561

Query: 605 Y-TRLSVLKNTE 615
               + +LK   
Sbjct: 562 RGDLVRILKQAN 573


>gi|83719171|ref|YP_441164.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|257140174|ref|ZP_05588436.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|83652996|gb|ABC37059.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 482

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 130/369 (35%), Gaps = 42/369 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
             + ++ PT  Q  AI  +L           +     G+GKT    + +   + A     
Sbjct: 17  NELGYTQPTPIQAQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHAFYAEN 70

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             I++ T     D +Q           L+L   D     G    +K  L +       LL
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLL 186

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L  + L    + ++  +    + I   I P++R  +      ++     
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNW 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  +         +    R          S   IHG  S   +   +  FKN T +
Sbjct: 247 FQVLVFTRT--------KHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKNCTLQ 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT +   GID+     ++  +  +     +H++ GR GR       + L      + 
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKQL 357

Query: 604 SYTRLSVLK 612
                 ++K
Sbjct: 358 LRDIERLIK 366


>gi|320583325|gb|EFW97540.1| ATP-dependent rRNA helicase, putative [Pichia angusta DL-1]
          Length = 470

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 128/342 (37%), Gaps = 22/342 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           +  + F +PT  Q  ++   LQ          I     GSGKT    I +  A+   +  
Sbjct: 82  IEKLNFSTPTPIQAQSLPHSLQGRD------IIGIAQTGSGKTAAFAIPILQALWEAQTP 135

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A ++AP   LA Q  E       N  +    I G M    + K L R    + H+I+ 
Sbjct: 136 YFACVLAPTRELAYQIRETFDALGVNMGLRCSTIVGGMDMMEQAKELMR----KPHVIVA 191

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D ++  K   +   +        RL   +       +L       +T + ++  
Sbjct: 192 TPGRLMDHLENTKGFSLKALKYLVMDEADRLLDMEFGPVLDRILNIIPRERKTYLFSATL 251

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--- 498
              + K+ ++ +   P+K  +       + + +  +V+ +G K  ++   + E       
Sbjct: 252 TSKVEKL-QRASLIDPVKIAVNDKYSTVDTLIQTLMVVPDGYKNTYLIYLLNEYVGKSVI 310

Query: 499 ---NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                 +  ++   L      S   +HG+++   +   ++ FK+G  ++L+AT V   G+
Sbjct: 311 VFARTCAHAQKVALLARILGFSAIPLHGQLTQAQRLGALNKFKSGDKQILVATDVAARGL 370

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           D+    +++  +      A +H++ GR  R       + L  
Sbjct: 371 DIPSVDLVVNYDIPTDSKAYIHRV-GRTARAGRSGKSVSLVT 411


>gi|312947721|gb|ADR28548.1| ATP-dependent RNA helicase DeaD [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 629

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 165/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLGKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 TAE---GEELDLETLAAALLKMA 432


>gi|218676343|ref|YP_002395162.1| Superfamily II DNA and RNA helicase [Vibrio splendidus LGP32]
 gi|218324611|emb|CAV26155.1| Superfamily II DNA and RNA helicase [Vibrio splendidus LGP32]
          Length = 428

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 134/362 (37%), Gaps = 39/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
             T  Q+ AI      M++K   +       G+GKT    + +   +   G        +
Sbjct: 23  KLTPIQQKAIP-----MARKGHDIF-ATAQTGTGKTAAFSLPVIQHLLNSGKKASRGTAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA Q  + IK Y + T++ V  + G    + + + LE        I++ T 
Sbjct: 77  GLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQLEL----GVDILVATP 132

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
              ++ ++           L+    D     G     R  +    T+P +++ +AT   +
Sbjct: 133 GRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSPQIMMFSATTSTQ 192

Query: 434 --TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L +  L       +  + +    +  V+ P+++  +     +++  +  +   +   
Sbjct: 193 LNQLSVDILRKPKRISVERENSTAATVGHVVYPVDQERKTELLSELIGRKNWRQVLVFVN 252

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +E       +  +    L      ++ + HG  +   +   +D FK G  ++++AT V 
Sbjct: 253 YKE-------TANDVVKELKLDGIKAV-LCHGDKAQSARRRALDDFKEGRARVMVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D   +I  +        +H++ GR GR  +    I   +            ++
Sbjct: 305 ARGLDIEDLPHVINYDMPFLAEDYVHRI-GRTGRAGKQGHAISFVNREEELTVVQVEKLI 363

Query: 612 KN 613
           + 
Sbjct: 364 QQ 365


>gi|161950038|ref|YP_404825.2| ATP-dependent RNA helicase DeaD [Shigella dysenteriae Sd197]
 gi|309785489|ref|ZP_07680120.1| cold-shock DEAD box protein A [Shigella dysenteriae 1617]
 gi|308926609|gb|EFP72085.1| cold-shock DEAD box protein A [Shigella dysenteriae 1617]
          Length = 629

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 168/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLQNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      + +AL +       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGQ----QIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 TAE---GEELDLETLAAALLKMA 432


>gi|330951359|gb|EGH51619.1| helicase [Pseudomonas syringae Cit 7]
          Length = 629

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|302063416|ref|ZP_07254957.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato K40]
          Length = 629

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|291225666|ref|XP_002732826.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 23-like
           [Saccoglossus kowalevskii]
          Length = 768

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 132/382 (34%), Gaps = 54/382 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------E 319
            PT  Q  AI   LQ+         I   + GSGKT   LI +   +            +
Sbjct: 361 EPTPIQRQAIPIGLQNRDV------IGVAETGSGKTAAFLIPLLVWISSLPKIARQEDVD 414

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G  AVI+AP   LAQQ       + +   I    I G + +  +   L         I+
Sbjct: 415 QGPYAVILAPTRELAQQIEAETINFGKPLGIRTVSIIGGISREDQGFKLRMGCE----IV 470

Query: 380 IGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQK----------------A 418
           I T     D ++   L+L       +DE  R          Q                 A
Sbjct: 471 IATPGRLIDVLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQHILEYLPVSNQKPDTDDA 530

Query: 419 TAPHVLLM---TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                LL    +     +T++ T+     + +I      R+P    I  + +  + +E++
Sbjct: 531 EDHDKLLANFASKHKYRQTVMFTATMPPPVERIARNYL-RRPAVVHIGSVGKPVDRVEQV 589

Query: 476 KVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             ++ + +K   +   +E   E       N +   +      E    +   +HG  S   
Sbjct: 590 VYMVKQQEKRQKLVHLLEAGFEPPVMTFVNQKKGCDVLAKSLEKMGYNATTLHGGKSQEQ 649

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E  + S KNG   +L+ T V   GID+ D S++I  +         H++ GR GR  + 
Sbjct: 650 REFALASLKNGDKDILVCTDVAGRGIDIKDVSMVINYDMAKNIEDYTHRI-GRTGRAGKT 708

Query: 590 SSCILLYHPPLSKNSYTRLSVL 611
              + L  P      Y     L
Sbjct: 709 GLAVSLVTPDDKMVMYDLKHCL 730


>gi|163788491|ref|ZP_02182937.1| inducible ATP-independent RNA helicase [Flavobacteriales bacterium
           ALC-1]
 gi|159876811|gb|EDP70869.1| inducible ATP-independent RNA helicase [Flavobacteriales bacterium
           ALC-1]
          Length = 372

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 136/345 (39%), Gaps = 38/345 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT+ QE+ I  +L+     +    I     G+GKT    + +  A++      QA+I+AP
Sbjct: 25  PTEIQETVIPILLE-----SNTDLIGLAQTGTGKTAAFGLPVLHAIDKNKSEVQALIIAP 79

Query: 330 IGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
              L QQ  + + ++T+    +I  E + G      + KAL R      HI++ T     
Sbjct: 80  TRELVQQIQKQLFRFTKYIDGKIFAEGVYGGEKMDRQIKALTRA----THIVVATPGRLL 135

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++           L+L   DE    G ++ L    K           T    T + ++
Sbjct: 136 DLVERGAVDISNVKILVLDEADEMLSMGFKEDLNKILKYN---------TKKRNTWLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
               DI  I +       ++  +     ++E I    +  +   K   +   +E++++  
Sbjct: 187 TMPDDIKSIIKNYMSPDAVRVEVNKNALVNENISHHYIQTNIKDKLNMVIRILEKRQDER 246

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  ++  +      +H   ++  + G M   +++ VM +FKN + ++L++T V   
Sbjct: 247 GIIFCRTKAGTKTLAQQLQHEGFAVGALEGDMQQKERDKVMRAFKNESLQILVSTDVSAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GIDV D S ++            H+  GR  R  +    I L  P
Sbjct: 307 GIDVRDLSFVLHHQLPEHLDYYTHR-SGRTARAGKTGQSIALIIP 350


>gi|154299943|ref|XP_001550389.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10]
 gi|160380638|sp|A6SEH9|DED1_BOTFB RecName: Full=ATP-dependent RNA helicase ded1
 gi|150857142|gb|EDN32334.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10]
          Length = 683

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/379 (16%), Positives = 133/379 (35%), Gaps = 55/379 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGG--------- 322
           PT  Q+ +I  +   M  ++ M        GSGKT   L  +   A + G          
Sbjct: 209 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQAFQTGPSPVPANAAG 262

Query: 323 ----------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                      ++I+AP   L  Q Y+  +K+   + +   ++ G      + + +ER  
Sbjct: 263 SFGRTRKAYPTSLILAPTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQMER-- 320

Query: 373 HGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP--- 421
                +++ T     D I+  +        L+L   D     G + +++   +       
Sbjct: 321 --GCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGV 378

Query: 422 ---HVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                L+ +AT     + L    L D     +    +  + I   +  +  ID+    L 
Sbjct: 379 QNRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDIDKRSVLLD 438

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           ++ + G     I            + + +  +    +       IHG  +  ++E  ++ 
Sbjct: 439 ILHTHGAGLTLIFV--------ETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEM 490

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+NG C +L+AT V   G+D+ +   ++  +        +H++ GR GR          +
Sbjct: 491 FRNGRCPILVATAVAARGLDIPNVKHVVNYDLPTDIDDYVHRI-GRTGRAGNTGISTAFF 549

Query: 597 HPPLSKNSYTRLSVLKNTE 615
           +          + +LK   
Sbjct: 550 NRGNRGVCRDLIELLKEAN 568


>gi|330952956|gb|EGH53216.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae Cit 7]
          Length = 442

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 134/352 (38%), Gaps = 40/352 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + +PT  Q  AI  +L           +     G+GKT    + +   +   G  
Sbjct: 16  LEALGYQTPTPVQTQAIPPVLAGRD------LMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+++AP   LA Q +E I++Y ++  +      G +    +   L R      
Sbjct: 70  VAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRR----GV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLTQK--ATAPHVLLM 426
            +++ T     D     ++++ +L  +I+DE  R    G  + L+            LL 
Sbjct: 126 DVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLF 185

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKK 484
           +AT      +L +    D   I   P       +K  ++ +++  +      + +   KK
Sbjct: 186 SATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKA----DLFIHLMKK 241

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             W    +  K       +V+R  +L  +       IHG      ++  +D FK+   K+
Sbjct: 242 HRWGQVLVFAKTRVGVDQLVDRLQALGMNADG----IHGDKPQATRQRALDRFKSNEVKI 297

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           L+AT V   G+D+ D   ++  +        +H++ GR GR       I L 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGLTGEAISLV 348


>gi|329945603|ref|ZP_08293336.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528606|gb|EGF55571.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 852

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 138/383 (36%), Gaps = 35/383 (9%)

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVG 303
           R+Q  +     + +   + + +      SPT  Q+ AI  +L           +     G
Sbjct: 141 RQQDDEITFADLGLPSDLLKAVTDMGFVSPTAIQKEAIPVLLSGRDV------VGVAQTG 194

Query: 304 SGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNM 359
           +GKT    + +  AV++     QA+++AP   LA Q  E I      +  + V  + G  
Sbjct: 195 TGKTAAFGLPLLDAVDSRDSVVQALVLAPTRELALQSAEAITDMAARSRGLDVVAVYGGA 254

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQR 411
           P   +  AL     G A +++GT     D I    L L  V        DE  R G  + 
Sbjct: 255 PYGPQIGAL----KGGAQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAED 310

Query: 412 LKLTQK--ATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR 467
           ++   +   T     L +AT  P  + +    L +    +++   +    +      +  
Sbjct: 311 VETIAESLPTERRTALFSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVVPF 370

Query: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
             ++    +V+     +A  +  +         +S  E             A I G +  
Sbjct: 371 RHKIGAVSRVLAVTDAEAAIVFVRT--------KSTAEDVAIELAGRGIQAAAISGDVPQ 422

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            ++E +++  + GT  +L+AT V   G+DV    +++  +      A +H++ GR GR  
Sbjct: 423 RERERLVERLRAGTLDVLVATDVAARGLDVDRIGLVVNFDVPREAEAYVHRI-GRTGRAG 481

Query: 588 EISSCILLYHPPLSKNSYTRLSV 610
                +    P           +
Sbjct: 482 RHGEAVTFLTPKEKGKLRQIERL 504


>gi|189426069|ref|YP_001953246.1| ATP-dependent RNA helicase DbpA [Geobacter lovleyi SZ]
 gi|189422328|gb|ACD96726.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 465

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 160/443 (36%), Gaps = 69/443 (15%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q  ++  IL           I +   GSGKT    I + + ++      QA+++ P 
Sbjct: 28  TPIQAHSLPPILASKD------LIARAKTGSGKTAAFGIGLLSRLDTTALQLQALVLCPT 81

Query: 331 GILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + +++  + T  I V  + G +P   +  +LE      AH+++GT     D 
Sbjct: 82  RELADQVAKELRRLARFTENIRVLTVCGGVPFGPQLGSLEH----GAHVVVGTPGRLLDH 137

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           ++   L        +L   D     G Q  +            L+ A P  R  +L S  
Sbjct: 138 LRRGSLDLSSLQTLVLDEADRMLDMGFQDDI----------RSLIAAAPARRQTLLFSAT 187

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
             D          + P++  +   + +   IE+    +   +++  +   +   +     
Sbjct: 188 YPDSIADMSAAMQQTPVEVSV-DEDHVAGTIEQHFYAVEPDQRSEAVARILGRYRPESTL 246

Query: 497 --ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
              +      E  + L E   +++AI HG +   +++ V+  F N +  +L+AT V   G
Sbjct: 247 VFCNTKLDCQELADDLKERGFAALAI-HGDLEQRERDQVLVRFSNKSASVLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+ + + +I            H++ GR GR  E    I L     S+        L   
Sbjct: 306 LDIKELAAVINFELSRNPEVHTHRI-GRTGRAGEQGLAISLVSRRDSRLIKGMEEDLACR 364

Query: 615 EDGFLI-------------AEEDL-------KQRKEGEILG--IKQSGMPKFLIAQPELH 652
            D                 A   L        + + G+ILG    + G+    + + +L 
Sbjct: 365 IDLQEFSSLAPLTGRPPAAAMVTLCIDGGRKNKLRPGDILGALTGEGGIAGSEVGRIDLF 424

Query: 653 D-----SLLEIARKDAKHILTQD 670
           D     +++  + + A   L  +
Sbjct: 425 DFHSYVAIMGQSVEQALRCLANN 447


>gi|119773524|ref|YP_926264.1| ATP-dependent RNA helicase RhlE [Shewanella amazonensis SB2B]
 gi|119766024|gb|ABL98594.1| ATP-dependent RNA helicase RhlE [Shewanella amazonensis SB2B]
          Length = 464

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 140/366 (38%), Gaps = 41/366 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ +  PT+ Q+ AI   L           +     G+GKT    + +   +  G   
Sbjct: 16  LESLNYQQPTEIQQKAIPVALSGR------NLLAAAQTGTGKTAAFGLPLIERLSQGKTE 69

Query: 323 -----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                +AVI+AP   L  Q  + +  Y  N  + V  + G +    +++AL         
Sbjct: 70  RKKRVRAVILAPTRELVVQVADNLSAYAANLPLTVLAMYGGVDMQAQKQALIA----GVD 125

Query: 378 IIIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQ-----KATAPHVLLMT 427
           I++ T    +D      + + ++ ++++DE  R      +++         T    LL +
Sbjct: 126 ILVATPGRLKDMYHQRAVYFEEIQVLVLDEADRMLDMGFIEVINDLISRMPTNRQNLLFS 185

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           AT  PR   L      D  +I      +K I   ++ +++  +      ++ +E  +   
Sbjct: 186 ATLSPRIRELAKTAVPDPVEIAIAKPSKKEISQWLVTVDKDTKSALLSHLIQTEQWQQAL 245

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            +    +  S  E         H   S   +E V+  FK+G+ + L+A
Sbjct: 246 IF--------IETKHGAAKLVSQLEKRGIHAEAFHSGRSQAVREQVLSEFKDGSLQYLVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GIDV     ++  +        +H++ GR GR       + L    LSK+ +  
Sbjct: 298 TGVAARGIDVDKLERVVNYDLPFPPDEYIHRI-GRTGRAGMTGEAVSL----LSKDDFKN 352

Query: 608 LSVLKN 613
           L ++++
Sbjct: 353 LCMIES 358


>gi|254428150|ref|ZP_05041857.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
 gi|196194319|gb|EDX89278.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
          Length = 551

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 137/370 (37%), Gaps = 36/370 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q  AI          +    + Q   G+GKT    + + A ++      Q +I+A
Sbjct: 28  QPSPIQAQAIP------LLLDGHDLLGQAQTGTGKTAAFALPLLARLDPALREPQMLILA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     +++ ++   + V  I G      + K L     G A +I+GT     
Sbjct: 82  PTRELAIQVATACEEFAKDIKGLQVLPIYGGGEYRTQLKGLR----GGAQVIVGTPGRVM 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL--MTAT--PIPRTL 435
           D ++           L+L   DE  R G    +K   + T     L   +AT  P+ R +
Sbjct: 138 DHMERGSMKLNNLKALVLDEADEMLRMGFIDDVKWVLERTPDDCQLALFSATMPPVIRKV 197

Query: 436 VLTSLGDIDISKITEKPAGR-KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
               L    + +I    A     I+    P+  ++++    +++ +E   A  +  + + 
Sbjct: 198 ADQHLKQPKLVRIDNGGATTGTTIRQRYWPVAGLNKLDAVCRILEAEEHDAVLVFVRTK- 256

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 ++ +E    L+         ++G +    +E  +   K+    LLIAT V+  G
Sbjct: 257 ------QATLELAEQLNRRGL-RAEALNGDIPQQQREKTVQRLKDKRFDLLIATDVVARG 309

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   + ++  +      A +H++ GR GR       IL               + + +
Sbjct: 310 LDVPRITHVVNYDMPGDPEAYVHRI-GRTGRAGRQGDAILFVARREQHVLRQIERITRQS 368

Query: 615 EDGFLIAEED 624
            +   +   D
Sbjct: 369 IEKMALPSVD 378


>gi|150864621|ref|XP_001383517.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS
           6054]
 gi|149385877|gb|ABN65488.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS
           6054]
          Length = 396

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/335 (20%), Positives = 128/335 (38%), Gaps = 21/335 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT  Q  AI   L+          I     GSGKT    I +  ++   +     +++A
Sbjct: 5   KPTPIQSEAIPHALEGKD------IIGLAQTGSGKTAAFAIPILQSLWEAQTPYFGLVLA 58

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E          +    + G M    + + L R    + HIII T     D
Sbjct: 59  PARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMR----KPHIIIATPGRIMD 114

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +++ K   + + +        +L   +       +L    P  RT  L S    +  + 
Sbjct: 115 HLEHTKGFSLKMLKYFVMDEADKLLDLEFGPVLDKIL-KQIPSKRTTYLFSATMTNKIEK 173

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE------KKESNFRS 502
            ++ +   P++  +    +  + + +  +++S+G K  ++   + E         +  R+
Sbjct: 174 LQRASLHNPVRVAVSSKYQTADNLIQSMMLVSDGYKNTYLIHLLNEFVGKSIIIFARTRA 233

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             +R + L      S   +HG ++   +   ++ FK+GT  +LIAT V   G+D+    +
Sbjct: 234 HTQRTSILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDV 293

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +I  +      A +H++ GR  R       I L  
Sbjct: 294 VINYDIPTDSKAYVHRV-GRTARAGRSGKSISLVT 327


>gi|289647882|ref|ZP_06479225.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 625

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|186474785|ref|YP_001856255.1| ATP-dependent RNA helicase DbpA [Burkholderia phymatum STM815]
 gi|184191244|gb|ACC69209.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 463

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 154/435 (35%), Gaps = 58/435 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q +++   L           I Q   GSGKT    +A+ A ++A     QA+++ P 
Sbjct: 30  TPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLARLDARRYAVQAMVLCPT 83

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + I++  +    I V  + G  P   +  +LE      AHI++GT     D 
Sbjct: 84  RELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH----GAHIVVGTPGRIMDH 139

Query: 390 IQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           ++   L L      ++DE  R           K               +TL+ ++     
Sbjct: 140 LERGSLSLDALNTLVLDEADRMLDMGFFDDIAKVARQ------CPKERQTLLFSATYPEG 193

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------S 498
           I+K++++       K V +     D  I +    ++E ++ + +   +   +        
Sbjct: 194 IAKLSQQFLRNP--KEVKLEERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFC 251

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           N ++       +          +HG +   +++ V+  F N +C +L+AT V   G+D+ 
Sbjct: 252 NTKNQCRDLLDVLCAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIA 311

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
               +I  +        +H++ GR GR ++    + L                    +  
Sbjct: 312 QLEAVINVDVTPDPEVHVHRI-GRTGRADQEGWALSLASMNEMGRVGAIEEAQGRDVEWH 370

Query: 619 LIA-------------EEDLKQRK-------EGEILG--IKQSGMPKFLIAQP--ELHDS 654
            +A              E L+           G++LG     +G     I +       +
Sbjct: 371 PLAELNAASDEPLLPPMETLQILGGRKEKIRPGDVLGALTGDAGFNGSQIGKINVTEFST 430

Query: 655 LLEIARKDAKHILTQ 669
            + + R  A+  L +
Sbjct: 431 YVAVERGIARDALRK 445


>gi|52840505|ref|YP_094304.1| DEAD-box ATP dependent DNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52627616|gb|AAU26357.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 414

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/360 (18%), Positives = 131/360 (36%), Gaps = 39/360 (10%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +   + +  + ++ PT  Q  AI  IL           +     G+GKT   ++ +    
Sbjct: 10  EPLNRAVSELGYTTPTSIQLKAIPLILNGHD------LLGSAQTGTGKTASFVLPILQKA 63

Query: 319 EAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
               Q        +I+ P   LA Q +E I +Y +   +   +I G +   ++ K L+  
Sbjct: 64  SQQTQTSPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDS- 122

Query: 372 AHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAP 421
                 I++ T     D     ++++ ++  +++DE  R      +   +K         
Sbjct: 123 ---GLEILVATPGRLLDLYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKR 179

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGR--KPIKTVIIPINRIDEVIERLKVVL 479
             LL +AT  P    L         +I   P     K IK  +  ++R  ++     ++ 
Sbjct: 180 QNLLFSATFTPEVRALARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLH 239

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
                   +  + +           +    L E    S+AI HG  S   +   +  FK+
Sbjct: 240 KNNWGQTLVFSRTKHGA-------NKLVKQLAESQIYSVAI-HGNKSQAQRIKALADFKS 291

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G  + LIAT +   GID+   + ++  +  H     +H++ GR GR       + L    
Sbjct: 292 GKVQTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRI-GRTGRAGASGLAVSLVSTE 350


>gi|33593906|ref|NP_881550.1| ATP-dependent RNA helicase DbpA [Bordetella pertussis Tohama I]
 gi|33563980|emb|CAE43244.1| probable ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|332383325|gb|AEE68172.1| ATP-dependent RNA helicase DbpA [Bordetella pertussis CS]
          Length = 462

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/460 (17%), Positives = 171/460 (37%), Gaps = 66/460 (14%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---G 322
           + + F   T  Q  ++  IL+          I Q   GSGKT    + +   ++      
Sbjct: 20  QGLGFEQMTPIQAQSLPLILEGRD------LIAQAKTGSGKTAAFGLGVLQNLDVNRLAP 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+++ P   LA Q  + +++  +    + V  + G      + ++L R      H+++G
Sbjct: 74  QALVLCPTRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLAR----GTHLVVG 129

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    QD +    L        +L   D     G    +                    +
Sbjct: 130 TPGRIQDHLARGSLDLSTLNTLVLDEADRMVDMGFYDDIAAIASHCPAR---------RQ 180

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++    +I K++ +         V          IE+L   + EG++   +   + 
Sbjct: 181 TLLFSATYPDNIRKLSARFLRNPAEIKV--EAQHDASRIEQLFFEIDEGQRLDAVATLLA 238

Query: 494 EKKESNFRSVVE---RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             + ++  +      R + L E   +   S   ++G +   +++ ++  F N +C +L+A
Sbjct: 239 HFRPASTLAFCNTKIRSHDLVERLRAQGISAQALNGDLEQRERDEILIQFANQSCAVLVA 298

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS--- 604
           T V   G+D+ +   +I  +        +H++ GR GRG++    + L  P   + +   
Sbjct: 299 TDVAARGLDIQNLGAVINVDVTKDTEVHVHRI-GRSGRGDQKGLALSLCSPEEMRWANLI 357

Query: 605 ---------YTRLSVLKNTEDGFLIA-EEDLKQRK-------EGEILG--IKQSGMPKFL 645
                    +  L  L+   D  L A    L  +         G++LG      G+    
Sbjct: 358 EQYQGAPLKWADLGSLRPKSDRPLRAPMITLCIQGGKKDKLRPGDLLGALTGDGGLAFEQ 417

Query: 646 IA--QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           +        ++ + + R+ AK    +  + ++++G+  R+
Sbjct: 418 VGKINITEFNAYVALDRQVAKQAFARLSN-SNIKGRRFRM 456


>gi|330967974|gb|EGH68234.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 629

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|227357070|ref|ZP_03841440.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
           mirabilis ATCC 29906]
 gi|227162762|gb|EEI47725.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
           mirabilis ATCC 29906]
          Length = 611

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/364 (19%), Positives = 134/364 (36%), Gaps = 36/364 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q+  I  +L           +     GSGKT    + +   ++     
Sbjct: 22  LNDLGYEKPSPIQQQCIPFLLDG------NDVLGMAQTGSGKTAAFSLPLLHNLDESLKA 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E I+ ++++   + V  + G      R     R       +++
Sbjct: 76  PQILVLAPTRELAVQVAEAIEDFSKHLPKVNVVALYGG----QRYDVQLRALRQGPQVVV 131

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D +            L+L   DE  R G  + +   L++        L +AT 
Sbjct: 132 GTPGRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAEHQTALFSATM 191

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + D    +I      R  I           +    ++ + +E   A  I
Sbjct: 192 PEAIRRITRRFMNDPKEVRIQSSVTTRPDISQSYWMTYGARKNEALIRFLEAEDFDAAII 251

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L  +  +S A+ +G M+   +E  ++  KNG   +LIAT
Sbjct: 252 FVRTKN-------ATLEVAETLERNGYNSAAL-NGDMNQSLREQTLERLKNGRLDILIAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       IL       +      
Sbjct: 304 DVAARGLDVDRISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRAILFVDNRERRLLRNIE 362

Query: 609 SVLK 612
             +K
Sbjct: 363 RTMK 366


>gi|224139932|ref|XP_002323346.1| predicted protein [Populus trichocarpa]
 gi|222867976|gb|EEF05107.1| predicted protein [Populus trichocarpa]
          Length = 611

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 137/375 (36%), Gaps = 45/375 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q +AI  +L           +     GSGKT      + A +          GG+
Sbjct: 177 KPTPVQRNAIPILLAGRD------LMACAQTGSGKTAAFCFPIIAGIMREQYVQRPHGGR 230

Query: 324 -----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A+I++P   L+ Q ++  KK++  T + V ++ G  P   + + LER       I
Sbjct: 231 TMYPLALILSPTRELSSQIHDEAKKFSYQTGVKVVVVYGGAPINQQLRELER----GVDI 286

Query: 379 IIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T     D ++  ++ L ++     DE  R          Q       + M    + +
Sbjct: 287 LVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEP--QIRKIVEQMDMPPCGMRQ 344

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    +I ++         I   +  +    ++I +    + E  K   +   + 
Sbjct: 345 TMLFSATFPKEIQRLASDFLS-NYIFLAVGRVGSSTDLIVQRVEYVQEIDKRSHLMDLLH 403

Query: 494 EKKESN-------------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            ++E+               +   +    L          IHG  +  ++E  + SFK+G
Sbjct: 404 AQRETEVNSKHSLTLVFVETKKGADSLEHLLHVNGFPATSIHGDRTQQEREMALRSFKSG 463

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+D+   + ++  +  +     +H++ GR GR          ++   
Sbjct: 464 KTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI-GRTGRAGNTGLATAFFNENS 522

Query: 601 SKNSYTRLSVLKNTE 615
              +     +++   
Sbjct: 523 MSLARPLADLMQEAN 537


>gi|194433859|ref|ZP_03066133.1| ATP-independent RNA helicase DbpA [Shigella dysenteriae 1012]
 gi|194417962|gb|EDX34057.1| ATP-independent RNA helicase DbpA [Shigella dysenteriae 1012]
 gi|320180214|gb|EFW55149.1| ATP-dependent RNA helicase DbpA [Shigella boydii ATCC 9905]
          Length = 457

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/458 (18%), Positives = 166/458 (36%), Gaps = 58/458 (12%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSTRVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+ T
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQIT 363

Query: 615 -----------------------EDGFLIAEEDLKQRKEGEILGIKQS--GMPKFLIAQP 649
                                   DG   A    K R  G++LG      G+    I + 
Sbjct: 364 LNWQTPPVNSSIVPLEAEMATLCIDGGKKA----KMR-PGDVLGALTGDIGLDGADIGKI 418

Query: 650 ELHDS--LLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
            +H +   + + +  A     Q  D   ++G++ R+ L
Sbjct: 419 AVHPAHVYVAVRQAVAHKAWKQLQD-GKIKGKTCRVRL 455


>gi|167770986|ref|ZP_02443039.1| hypothetical protein ANACOL_02340 [Anaerotruncus colihominis DSM
           17241]
 gi|167667026|gb|EDS11156.1| hypothetical protein ANACOL_02340 [Anaerotruncus colihominis DSM
           17241]
          Length = 397

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 128/342 (37%), Gaps = 37/342 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
             T+ QE AI  +L+          I +   G+GKT    + +   ++      QAV++ 
Sbjct: 38  ELTEIQEKAIPVMLEGRE------IIAKAPTGTGKTCAFGVPIMEKIDPSALAVQAVVLC 91

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   L  Q  + +++      Q+ V  + G      +  AL+R     A I++ T     
Sbjct: 92  PTRELCTQIVDELRELAHFRPQVRVAAVYGGQQIDRQINALKR----GAQIVVATPGRML 147

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVL 437
           D +    +        +L   DE    G  + +   L +      +++ +AT     + +
Sbjct: 148 DHMHRRTINLSKVSIAVLDEADEMLDMGFYKDVCKILDRLPKERQMVMFSATISREVMDI 207

Query: 438 TSLGDIDISKITEKPA--GRKPIKTVIIPINRIDEVIERLKV-VLSEGKKAYWICPQIEE 494
             L   D  ++T +P    +  I   ++      ++ +   +   ++  K    C     
Sbjct: 208 GWLYQRDTVELTVEPVKESQPKIHQYMLESVGRQKLADLCYILEANDFHKVMIFCNT--- 264

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +      ++L      +   ++G M   ++  +M  F++G   +L+AT V   G
Sbjct: 265 ------KYSTASLSNLLRERGFNADCLNGDMRQSERNQIMARFRSGEISVLVATDVAARG 318

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           IDV+D   +            LH++ GR GR ++     + Y
Sbjct: 319 IDVLDVDAVFNYEIPLENEYYLHRI-GRTGRAKKEGVSYIFY 359


>gi|118586395|ref|ZP_01543844.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
 gi|118433182|gb|EAV39899.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
          Length = 509

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/339 (19%), Positives = 119/339 (35%), Gaps = 36/339 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  QE  I  I+Q       +  I Q   G+GKT    + +   V+      QA++++P 
Sbjct: 13  TPIQEKTIPLIIQG------VDVIGQAQTGTGKTAAFGLPILEEVDPKNPQIQALVISPT 66

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + K   +  +  ++I G      +  AL+        I++GT     D +
Sbjct: 67  RELAMQTEEELNKLGSDKHVKTQVIFGGYDIRRQIHALKE----HPQILVGTPGRLIDHL 122

Query: 391 QYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
             +         L++   DE    G  + ++     T             +TL+ ++   
Sbjct: 123 NRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDD---------RQTLLFSATMP 173

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNF 500
            DI KI  K         +      ID V +         +      +    + +    F
Sbjct: 174 DDIKKIGVKFMEDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRLFDVEQPELAIVF 233

Query: 501 RSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                R + L +         A IHG +    +   + SFK G  + L+AT V   G+D+
Sbjct: 234 GRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARGLDI 293

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
              + +   +      + +H++ GR GR       +   
Sbjct: 294 SGVTHVYNYDVPQDPESYVHRI-GRTGRAGHHGVSVTFV 331


>gi|29346241|ref|NP_809744.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568326|ref|ZP_04845737.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
 gi|29338136|gb|AAO75938.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842399|gb|EES70479.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
          Length = 422

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/356 (19%), Positives = 123/356 (34%), Gaps = 31/356 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE AI  IL+          I     G+GKT   L+ +   +  GG        VIM
Sbjct: 25  TPIQEQAIPIILEGKD------LIAVAQTGTGKTAAFLLPILNKLSEGGHPEDAINCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ ++         + G        +  + +  G A ++I T     
Sbjct: 79  SPTRELAQQIDQQMEGFSYFMPASSVAVYGGNDGILFEQQKKGLTLG-ADVVIATPGRLI 137

Query: 388 DS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                  +   K+   I+DE  R        L        + ++   P  R  ++ S   
Sbjct: 138 AHLSLGYVDLSKVSYFILDEADRM-------LDMGFYEDIMQIVKYLPKERQTIMFSATM 190

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
               +   K     P +  +      D++I+   V     K         +E  E     
Sbjct: 191 PAKIQQLAKTILNNPAEIKLAVSRPADKIIQAAYVCYENQKLGIIRSLFTDEVPERVIIF 250

Query: 501 ---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +  V+      +    ++  +H  +    +E VM  FK G   +L+AT ++  GID+
Sbjct: 251 ASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKAGRINILVATDIVARGIDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            D  ++I  +  H     +H++ GR  R       +         N  +  + L+ 
Sbjct: 311 DDIRLVINFDVPHDSEDYVHRI-GRTARANNDGVALTFISEKEQSNFKSIENFLEK 365


>gi|116491614|ref|YP_811158.1| superfamily II DNA/RNA helicase [Oenococcus oeni PSU-1]
 gi|116092339|gb|ABJ57493.1| Superfamily II DNA and RNA helicase [Oenococcus oeni PSU-1]
          Length = 521

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/339 (19%), Positives = 119/339 (35%), Gaps = 36/339 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  QE  I  I+Q       +  I Q   G+GKT    + +   V+      QA++++P 
Sbjct: 25  TPIQEKTIPLIIQG------VDVIGQAQTGTGKTAAFGLPILEEVDPKNPQIQALVISPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + K   +  +  +++ G      +  AL+        I++GT     D +
Sbjct: 79  RELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQIHALKE----HPQILVGTPGRLIDHL 134

Query: 391 QYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
             +         L++   DE    G  + ++     T             +TL+ ++   
Sbjct: 135 NRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDD---------RQTLLFSATMP 185

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIER--LKVVLSEGKKAYWICPQIEEKKESNF 500
            DI KI  K         +      ID V +         +      +    + +    F
Sbjct: 186 DDIKKIGVKFMEDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRLFDVEQPELAIVF 245

Query: 501 RSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                R + L +         A IHG +    +   + SFK G  + L+AT V   G+D+
Sbjct: 246 GRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARGLDI 305

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
              + +   +      + +H++ GR GR       +   
Sbjct: 306 SGVTHVYNYDVPQDPESYVHRI-GRTGRAGHHGVSVTFV 343


>gi|304413058|ref|ZP_07394531.1| RNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283901|gb|EFL92294.1| RNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 446

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 130/362 (35%), Gaps = 38/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  QE AI ++L           +     G+GKT    + +   +             
Sbjct: 58  APTPIQEKAIPEVLAGRD------LMASAQTGTGKTAGFTLPLLQLLSENQSLIKGRRPV 111

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  + +K Y++  ++   ++ G +    +   L     G   I++ T
Sbjct: 112 RALILTPTRELAAQIGDNVKNYSEFLKLRSMVVFGGVSINPQMMKLR----GGVDILVAT 167

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D     ++   K+ ++++DE  R      +           +L       + L+ 
Sbjct: 168 PGRLLDLEHQNAVDLAKIEILVLDEADRMLDMGFIHDI------RRILAKLPAKRQNLLF 221

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    DI  + +K     P    + P N   + I +    + + +K   +   I  +  
Sbjct: 222 SATFSNDIKLLAKKLLN-NPAYIEVSPGNTTAKHITQRVHFVDKSRKRQLLSYMIGSQNW 280

Query: 498 SNFRSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                        N L E         A IHG  S   +   +  FK+G  ++L+AT + 
Sbjct: 281 QQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIA 340

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     ++     +     +H++ GR GR E     I L      K       +L
Sbjct: 341 ARGLDIDQLPHVVNYELPNVPEDYVHRI-GRTGRAECSGEAISLVCVDEHKLLRDIERLL 399

Query: 612 KN 613
           KN
Sbjct: 400 KN 401


>gi|307188310|gb|EFN73102.1| Probable ATP-dependent RNA helicase DDX43 [Camponotus floridanus]
          Length = 677

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/454 (17%), Positives = 155/454 (34%), Gaps = 54/454 (11%)

Query: 194 LQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI 253
            QK+ + ++       +     +D    + ++ ++A  + +   I +  + +  +    I
Sbjct: 194 RQKERWATLPPIIKNFY----KEDPAVANMSKAKIAELKKINNNIEVKYVFENEEGSDEI 249

Query: 254 PINVEGKIAQKILRNIP----------FS-PTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            I    +  ++  +N P          F+ P+  Q  A   +L           I     
Sbjct: 250 KIPNLIETFEQAFQNYPEILREIQKQGFTKPSPIQCQAWPILLSGQD------LIGIAQT 303

Query: 303 GSGKTLVALIAMAAAVE---------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           G+GKTL  L+     ++          G   ++MAP   LA Q  + + KY+    I   
Sbjct: 304 GTGKTLAFLLPALIHIDGQITPRDERPGPNVLVMAPTRELALQIEKEVGKYS-YRGIKAV 362

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHR 405
            + G   +  +   + +       I+I T     D +Q   L        IL   D    
Sbjct: 363 CVYGGGNRKEQINIVTK----GVQIVIATPGRLNDLVQAGVLNVSAVTYLILDEADRMLD 418

Query: 406 FGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            G   Q R  L         ++ +AT     R L  + + +     +           T 
Sbjct: 419 MGFEPQIRKTLLGVRPDRQTVMTSATWPQGVRRLAQSYMKNPIQVCVGSLDLAAVHTVTQ 478

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521
            I +   DE ++ +     E      +     +K + +  S     + +          I
Sbjct: 479 KICMINEDEKLDMMHQFFREMGSYDKVIVFFGKKAKVDDISSDLALSKI------DCQSI 532

Query: 522 HGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581
           HG     D+E  ++  K G  ++L+AT V   GID+ D + ++  +        +H++ G
Sbjct: 533 HGDREQADREQALEDLKTGAVQILLATDVASRGIDIEDITHVLNYDFPKDIEEYVHRV-G 591

Query: 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           R GR       I         ++   +++L+   
Sbjct: 592 RTGRAGRTGESITFMTRQDWHHAKELINILEEAN 625


>gi|269137769|ref|YP_003294469.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda EIB202]
 gi|267983429|gb|ACY83258.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda EIB202]
          Length = 634

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 136/370 (36%), Gaps = 44/370 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q + I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAACIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLNNIDPSLKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   I V  + G      R     R       I++
Sbjct: 75  PQVLVLAPTRELAVQVAEAMADFSKHMHGINVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++           L+L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   T +  + + + ++  L+    +   
Sbjct: 191 PEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWT-VYGMRKNEALVRFLEAEDFDAAI 249

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +               + +E   +L  +  SS A+ +G M+   +E  ++  K+G   +
Sbjct: 250 IFV----------RTKNATLEVAEALERNGYSSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVDRISLVVNYDIPMDAESYVHRI-GRTGRAGRAGRALLFVDNRERRLL 357

Query: 605 YTRLSVLKNT 614
                 +K T
Sbjct: 358 RNIERTMKLT 367


>gi|254487619|ref|ZP_05100824.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
 gi|214044488|gb|EEB85126.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
          Length = 437

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 129/363 (35%), Gaps = 43/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q+ AI   +        ++ + Q   G+GKT    + + A +            +
Sbjct: 24  DPTPIQKQAIPHAMNG----RDVMGLAQ--TGTGKTAAFGVPLVAQMLEMEARPEPRTVR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  E +K + + TQ+   ++ G      + K LER       +++ T 
Sbjct: 78  GLVLAPTRELANQIMENLKGFCEGTQLKAMMVVGGQSINPQIKRLER----GVDLLVATP 133

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +            L+L   D+    G    L+                   +T+
Sbjct: 134 GRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIASVLPKE---------RQTM 184

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     +++I        PI+  + P  +  + + +    +++ +K   +   + + 
Sbjct: 185 LFSATMPKLMNEIANSYLN-SPIRIEVSPPGKAADKVTQEVHFIAKAEKKALLIELLAKH 243

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            E         +   E+            A IHG  S   ++  ++SFK G   +L+AT 
Sbjct: 244 TEERALVFGRTKHGCEKLMKDLVKSGFKAASIHGNKSQGQRDRAIESFKKGDITVLVATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D   +      +     +H++ GR  R  +  + I    P           
Sbjct: 304 VAARGLDIPDVKHVYNYELPNVPDNYVHRI-GRTARAGKDGAAIAFCAPDEMGELKDIQK 362

Query: 610 VLK 612
            +K
Sbjct: 363 TMK 365


>gi|198452173|ref|XP_001358660.2| GA20653 [Drosophila pseudoobscura pseudoobscura]
 gi|198131816|gb|EAL27801.2| GA20653 [Drosophila pseudoobscura pseudoobscura]
          Length = 743

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 140/373 (37%), Gaps = 49/373 (13%)

Query: 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------- 319
           +  P  P+  Q  A   +L+     + M+ I Q   G+GKTL  L+      E       
Sbjct: 327 QGFP-KPSPIQSQAWPILLKG----HDMIGIAQ--TGTGKTLAFLLPGMIHTEYQSIPRG 379

Query: 320 --AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
              G   +++AP   LA Q    +KKY+      V +  G      RR  +  +  G A 
Sbjct: 380 QRGGANVLVLAPTRELALQIEMEVKKYSFRDMRAVCVYGGGC----RRMQISDVERG-AE 434

Query: 378 IIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           III T     D +Q           L+L   D     G + ++           +LM   
Sbjct: 435 IIICTPGRLNDLVQAKVIDVSSITYLVLDEADRMLDMGFEPQI---------RKVLMDIR 485

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVI-----IPINRIDEVIERLKVVLSE-GK 483
           P  +T++ ++     + ++ +      PI+  +        + + +VIE L+    + G 
Sbjct: 486 PDRQTIMTSATWPPGVRRLAQSYMN-NPIQVCVGSLDLAATHSVKQVIELLEDESEKYGI 544

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNG 540
              +I    +  K   F     R + L    T        IHG     D+E  +   K+G
Sbjct: 545 IKSFIKNMTKTDKIIVFCGRKARADDLSSDLTLDGFMTQCIHGSRDQSDREQAIADIKSG 604

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++LIAT V   G+D+ D S +I  +        +H++ GR GR     + I       
Sbjct: 605 VVRILIATDVASRGLDIEDISHVINYDFPRNIEEYVHRV-GRTGRAGRTGTSISFITRSD 663

Query: 601 SKNSYTRLSVLKN 613
              +   +++L+ 
Sbjct: 664 WGMAQELINILEE 676


>gi|192362464|ref|YP_001982184.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107]
 gi|190688629|gb|ACE86307.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107]
          Length = 474

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 128/376 (34%), Gaps = 47/376 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG------ 322
           +PT  Q+ AI  ++           +     G+GKT    + +   +   + G       
Sbjct: 23  APTPIQQQAIPAVING------GDILAAAQTGTGKTAGFTLPLLEKLSQRDPGKTPQGRR 76

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q ++ ++ Y +  ++   ++ G +    +   L     G   I++
Sbjct: 77  PVRALILTPTRELAAQVHDSVRTYGKYLRLRSAVVFGGVSINPQMMTLR----GGVDILV 132

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT- 429
            T     D +            L+L   D     G    +K  L         LL +AT 
Sbjct: 133 ATPGRLLDLVNQNAVYLQDVEILVLDEADRMLDMGFIHDIKKVLALLPKQRQNLLFSATF 192

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               + L    L    + ++  +    + +   ++P++R  +      ++     +   +
Sbjct: 193 SDDIKALADKLLNQPTLIEVARRNTASERVSQRVLPVDRHRKRELLSHLISGGNWQQVLV 252

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +         +    +     +    S A IHG  S   +   ++ FK G  + LIAT
Sbjct: 253 FTRT--------KHGANKLTEQLQDDGISAAAIHGNKSQGARTKALEDFKTGRIRALIAT 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            +   GID+     ++     +     +H++ GR GR +     + L             
Sbjct: 305 DIAARGIDIDQLPYVVNYELPNVPEDYVHRI-GRTGRAQAEGEAVSLVCVDEHSFLRDIE 363

Query: 609 SVLK-----NTEDGFL 619
            ++K         GF 
Sbjct: 364 KLIKREIPREMISGFE 379


>gi|197287236|ref|YP_002153108.1| ATP-dependent RNA helicase DeaD [Proteus mirabilis HI4320]
 gi|194684723|emb|CAR46715.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
           mirabilis HI4320]
          Length = 616

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/364 (19%), Positives = 134/364 (36%), Gaps = 36/364 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q+  I  +L           +     GSGKT    + +   ++     
Sbjct: 27  LNDLGYEKPSPIQQQCIPFLLDG------NDVLGMAQTGSGKTAAFSLPLLHNLDESLKA 80

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E I+ ++++   + V  + G      R     R       +++
Sbjct: 81  PQILVLAPTRELAVQVAEAIEDFSKHLPKVNVVALYGG----QRYDVQLRALRQGPQVVV 136

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D +            L+L   DE  R G  + +   L++        L +AT 
Sbjct: 137 GTPGRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAEHQTALFSATM 196

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + D    +I      R  I           +    ++ + +E   A  I
Sbjct: 197 PEAIRRITRRFMNDPKEVRIQSSVTTRPDISQSYWMTYGARKNEALIRFLEAEDFDAAII 256

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L  +  +S A+ +G M+   +E  ++  KNG   +LIAT
Sbjct: 257 FVRTKN-------ATLEVAETLERNGYNSAAL-NGDMNQSLREQTLERLKNGRLDILIAT 308

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       IL       +      
Sbjct: 309 DVAARGLDVDRISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRAILFVDNRERRLLRNIE 367

Query: 609 SVLK 612
             +K
Sbjct: 368 RTMK 371


>gi|189053928|dbj|BAG36435.1| unnamed protein product [Homo sapiens]
          Length = 648

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 128/365 (35%), Gaps = 39/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQ--- 323
            PT  Q  A   +LQ +        I     G+GKTL  L+     +       G +   
Sbjct: 264 KPTPIQSQAWPIVLQGID------LIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRP 317

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++ P   LA Q      KY+    +    + G   +  + + L++       III T
Sbjct: 318 GMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIEELKK----GVDIIIAT 372

Query: 383 HALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      +    +  +++DE  +           K      +L+   P  +T++ 
Sbjct: 373 PGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMK------ILLDVRPDRQTVMT 426

Query: 438 TSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           ++     + ++ +       I  V    ++ ++ + + I              ++     
Sbjct: 427 SATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSS 486

Query: 494 EKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             K   F S     + L         S+  +HG     D+E  +++FK G  ++LIAT +
Sbjct: 487 TDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDL 546

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D + +   +        +H++ GR GR       I        + +   +++
Sbjct: 547 ASRGLDVHDVTHVYNFDFPRNIEEYVHRI-GRTGRAGRTGVSITTLTRNDWRVASELINI 605

Query: 611 LKNTE 615
           L+   
Sbjct: 606 LERAN 610


>gi|117645818|emb|CAL38376.1| hypothetical protein [synthetic construct]
 gi|208967747|dbj|BAG72519.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [synthetic construct]
          Length = 648

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 127/365 (34%), Gaps = 39/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQ--- 323
            PT  Q  A   +LQ +        I     G+GKTL  L+     +       G +   
Sbjct: 264 KPTPIQSQAWPIVLQGID------LIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRP 317

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++ P   LA Q      KY+    +    + G      + + L++       III T
Sbjct: 318 GMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNGDEQIEELKK----GVDIIIAT 372

Query: 383 HALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      +    +  +++DE  +           K      +L+   P  +T++ 
Sbjct: 373 PGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMK------ILLDVRPDRQTVMT 426

Query: 438 TSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           ++     + ++ +       I  V    ++ ++ + + I              ++     
Sbjct: 427 SATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSS 486

Query: 494 EKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             K   F S     + L         S+  +HG     D+E  +++FK G  ++LIAT +
Sbjct: 487 TDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDL 546

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D + +   +        +H++ GR GR       I        + +   +++
Sbjct: 547 ASRGLDVHDVTHVYNFDFPRNIEEYVHRI-GRTGRAGRTGVSITTLTRNDWRVASELINI 605

Query: 611 LKNTE 615
           L+   
Sbjct: 606 LERAN 610


>gi|316933048|ref|YP_004108030.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315600762|gb|ADU43297.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 473

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/372 (16%), Positives = 132/372 (35%), Gaps = 27/372 (7%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             +   I++ +      +PT  Q   I   L           +     G+GKT    + +
Sbjct: 13  FGLADPISRALKEENYLTPTPIQAQTIPLALAGRDV------VGIAQTGTGKTASFALPI 66

Query: 315 AAAVEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +            + ++++P   L+ Q  +    Y ++  +   +  G +P   + +
Sbjct: 67  LHRLLQNRIKPTSKTCRVLVLSPTRELSGQILDSFNAYGRHIHLTATLAIGGVPMGRQVR 126

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
           +L     G   +++ T     D +Q   L L  V E        R+           ++ 
Sbjct: 127 SL----MGGVDVLVATPGRLLDLVQGNALKLTQV-EFLVLDEADRMLDMGFINDIRKIVA 181

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +TL  ++    DI+ + E+   R P +  + P++   E I +  + L    K  
Sbjct: 182 KLPIKRQTLFFSATMPKDIADLAEQ-MLRDPARVAVTPVSSTVERINQRVIQLDHSAKPA 240

Query: 487 WICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +   ++++K +        +   ++          +   IHG  S   +E V+ +F+ G
Sbjct: 241 VLAQLLKDEKVNQALVFTRTKHGADKVVKGLARAGITADAIHGNKSQNYRERVLAAFRTG 300

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             + L+AT +   GIDV   S +   +  +     +H++ GR  R     + I L     
Sbjct: 301 ELRTLVATDIAARGIDVDGVSHVFNFDLPNIPETYVHRI-GRTARAGADGTAISLCAGEE 359

Query: 601 SKNSYTRLSVLK 612
                    ++K
Sbjct: 360 MAYLRDIEKLIK 371


>gi|167617991|ref|ZP_02386622.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
          Length = 435

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 130/369 (35%), Gaps = 42/369 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
             + ++ PT  Q  AI  +L           +     G+GKT    + +   + A     
Sbjct: 17  NELGYTQPTPIQAQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHAFYAEN 70

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             I++ T     D +Q           L+L   D     G    +K  L +       LL
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLL 186

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L  + L    + ++  +    + I   I P++R  +      ++     
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNW 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  +         +    R          S   IHG  S   +   +  FKN T +
Sbjct: 247 FQVLVFTRT--------KHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKNCTLQ 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT +   GID+     ++  +  +     +H++ GR GR       + L      + 
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKQL 357

Query: 604 SYTRLSVLK 612
                 ++K
Sbjct: 358 LRDIERLIK 366


>gi|187477179|ref|YP_785203.1| ATP-dependent RNA helicase DbpA [Bordetella avium 197N]
 gi|115421765|emb|CAJ48276.1| ATP-independent RNA helicase [Bordetella avium 197N]
          Length = 462

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 171/461 (37%), Gaps = 68/461 (14%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---G 322
           +++ F   T  QE ++  IL           I Q   GSGKT    + +  +++      
Sbjct: 20  QSLGFEQMTPIQEQSLPLILDGRD------LIAQAKTGSGKTAAFGLGLLQSLDLTRLAP 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+++ P   LA Q  + +++  +    + V  + G      + ++L R     AH+++G
Sbjct: 74  QALVLCPTRELADQVAQELRRLARLIPNVKVLTLCGGAAGRPQAESLAR----GAHLVVG 129

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    QD +    L        +L   D     G    +                    +
Sbjct: 130 TPGRVQDHLARGNLDLAALKTLVLDEADRMVDMGFYDDIVAIASHCPVK---------RQ 180

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++    +I K++ +         V +        IE++   + E  +   +   + 
Sbjct: 181 TLLFSATYPDNIRKLSARFLRNPAE--VKVQTQHDASRIEQIFYEIDEADRLDAVATLLA 238

Query: 494 EKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             +        +      E    L      S   ++G +   D++ ++  F N +C +L+
Sbjct: 239 HYRPASTLVFCNTKIRSHELIERLRADGI-SAQALNGDLEQRDRDEILIQFANQSCAVLV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS-- 604
           AT V   G+D+ + S +I  +        +H++ GR GRGE+    + L  P   + +  
Sbjct: 298 ATDVAARGLDIQNLSAVINVDVSKDTEVHVHRI-GRSGRGEQKGLALSLCSPEEMRWANL 356

Query: 605 ----------YTRLSVLKNTEDGFLIA-EEDLKQRK-------EGEILG--IKQSGMPKF 644
                     +  +  L++  D  L A    L  +         G++LG      G+   
Sbjct: 357 IEQYQGAPLKWADIKSLRSKADRPLRAPMVTLCIQGGKKDKLRPGDLLGALTGDGGLSFE 416

Query: 645 LIA--QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            +        ++ + + R+ AK   ++  + ++++G+  R+
Sbjct: 417 QVGKINITEFNAYVALDRQIAKQAFSRISN-SNIKGRRFRM 456


>gi|121604151|ref|YP_981480.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120593120|gb|ABM36559.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 571

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 118/348 (33%), Gaps = 42/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q  AI  +L           +     G+GKT    + +   +    +        
Sbjct: 23  TPTPIQAQAIPAVLAG------GDLLGGAQTGTGKTAAFTLPLLQRLSTEPRLTNRRGVN 76

Query: 324 ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              A+IM P   LA Q  E ++ Y +   +   ++ G +    + + L R       I++
Sbjct: 77  AVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQIEKLRR----GVDILV 132

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT- 429
            T     D      L L  V     DE  R      +   +K           LL +AT 
Sbjct: 133 ATPGRLLDHASQGTLDLSQVQILILDEADRMLDMGFIHDIKKVLALVPKQKQTLLFSATF 192

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R L    L +    ++T +    + I   I P+ R  +      ++         +
Sbjct: 193 SDEIRELANGLLRNPLSIQVTPRNTTVQRITQTIHPVGRSKKKALLTHIINEHNWSQVLV 252

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +                L +    ++A+ HG  S   +   +  FKNG  + L+AT
Sbjct: 253 FTRTK-------FGANNVAEHLTKAGIPAMAL-HGNKSQTARTQALQGFKNGDIRALVAT 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            +   GID+ +   ++     +     +H++ GR GR       + L 
Sbjct: 305 DIAARGIDIDELPHVVNYEIPNVSEDYVHRI-GRTGRAGNSGQAVSLV 351


>gi|294139293|ref|YP_003555271.1| ATP-dependent RNA helicase DbpA [Shewanella violacea DSS12]
 gi|293325762|dbj|BAJ00493.1| ATP-dependent RNA helicase DbpA [Shewanella violacea DSS12]
          Length = 469

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/437 (18%), Positives = 155/437 (35%), Gaps = 57/437 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           S T  Q  ++  IL           I QG  GSGKT    + +   ++      Q++++ 
Sbjct: 34  SMTAIQAQSLPAILNGEDV------IGQGKTGSGKTAAFGLGLLHKLDVKRFRIQSLVLC 87

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+   +    I V  + G +P   +  +LE      AHII+GT     
Sbjct: 88  PTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEH----GAHIIVGTPGRII 143

Query: 388 DSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           D +    L L  V     DE  R      L           ++       +TL+ ++   
Sbjct: 144 DHLSRDLLNLENVNTLVLDEADRMLEMGFLPDL------DYIMAEMPRERQTLLFSATFP 197

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----- 497
             I K+ E+    KP+   +   +  + + +    + S   +   +   + + +      
Sbjct: 198 KQIQKVAEQ-IMFKPVMVKVASTHDSNTIDQHFYQIDSNKDRQKALRLLLLQHRPDSAVV 256

Query: 498 -SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +   +   +   +   S+  +HG +   D++  +  F N +  +++AT V   G+D
Sbjct: 257 FCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIMVATDVAARGLD 316

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL----- 611
           +    ++I           +H++ GR GR     +    Y              L     
Sbjct: 317 IEALDMVINYEFAFDTEVHIHRI-GRTGRAGSKGTAFTFYTLDDDYKIKLLEEYLERDIV 375

Query: 612 ------KNTEDGF--LIAEEDLKQRK-------EGEILG--IKQSGMPKFLIAQPEL--H 652
                 +N  D F        L+           G+ILG    + G+    + + ++   
Sbjct: 376 SEGLPPENLLDTFPTQPRMVTLQIEGGKKNKVRPGDILGALTGEDGIKGSEVGKIKITEF 435

Query: 653 DSLLEIARKDAKHILTQ 669
            S + + RK AK  L +
Sbjct: 436 RSYVAVDRKAAKRALHK 452


>gi|221482438|gb|EEE20786.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
          Length = 1544

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/378 (18%), Positives = 137/378 (36%), Gaps = 43/378 (11%)

Query: 272  SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
             P   Q  AI  ++           I   + GSGKTL   + +   V +  Q        
Sbjct: 995  EPFPIQMQAIPCLMCGRDV------IAVAETGSGKTLAYGLPLIRHVLSVKQQDFRDGAI 1048

Query: 324  AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            A+++AP   L  Q ++ I +  +   +      G      +  A++R       +I+GT 
Sbjct: 1049 ALVIAPTRELCNQIFKEINRCCKLVDLNAVACYGGAGIGSQLGAIKR----GVEVIVGTP 1104

Query: 384  ALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
                D +           ++  +++DE  R                  ++ ++ P  +T 
Sbjct: 1105 GRLIDILTMNGGRLTSLKRVTFIVLDEADRMFDFGFEPQVTS------IIASSRPDRQTC 1158

Query: 436  VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            + ++     I  +  +   +KP++ ++    R    +++   V+ E +K + +   + E 
Sbjct: 1159 LFSATFPPHIEALARR-ILQKPVEIIVGEKGRTAANVQQYVEVMEEERKFFRLLQLLGEW 1217

Query: 496  KES--------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +E               E F  L ++   + A +HG     D+E  +  F++G   LLIA
Sbjct: 1218 QEHGSVIIFVNRQVEADELFTELLKYGYQA-ATLHGGQDQTDREFTIQEFQDGVRTLLIA 1276

Query: 548  TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
            T+V   G+D     ++I     +     +H++ GR GR   I           +  +   
Sbjct: 1277 TSVAARGLDCKHCVLVINMTCPNHIEDYVHRI-GRTGRAGRIGVAYTFLTKEDADKADDL 1335

Query: 608  LSVLKNTEDGFLIAEEDL 625
               L  +      A  DL
Sbjct: 1336 EKALTQSGQAVPQALSDL 1353


>gi|327405768|ref|YP_004346606.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327321276|gb|AEA45768.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 685

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/368 (19%), Positives = 137/368 (37%), Gaps = 39/368 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           +  + F  PT  Q+SAI  +LQ  S       +     G+GKT    + +   V      
Sbjct: 16  IEALGFAEPTPIQQSAIPHLLQLES-----DFVGLAQTGTGKTAAFGLPLIHKVTDRPTE 70

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   L  Q  + ++ + +  Q I V  + G      +   ++R     A +++
Sbjct: 71  TQGLVIAPTRELCLQISKDLEAFAKFDQQIKVVAVYGGTDIRKQITDIKR----GATVVV 126

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            T     D I    + L  V        DE    G ++ +            +++ATP  
Sbjct: 127 ATPGRLVDLINRKAINLKTVETVVLDEADEMLNMGFKEDID----------AILSATPDT 176

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +++ L S           K     P++  +   N+ +E IE +   + E  +   +   I
Sbjct: 177 KSVWLFSATMPKEVAAIAKNYMTDPLEVAMGHKNQSNENIEHIYYTVKERDRYDALKRLI 236

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +   +         R+              S   +HG +S   ++ VMD F+  + +LL+
Sbjct: 237 DASPDIFGLVFCRTRNETATVAEKLAKEGYSAEPLHGDLSQAMRDRVMDRFRERSIQLLV 296

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   GIDV + + +I  N         H+  GR  R  +    ++L +   +     
Sbjct: 297 ATDVAARGIDVDNITHVINYNLPDDIENYTHR-SGRTARAGKQGKSLVLINTRENFKIKA 355

Query: 607 RLSVLKNT 614
               ++ T
Sbjct: 356 IERQIRTT 363


>gi|158530232|gb|ABW71831.1| putative RNA helicase [Phytophthora infestans]
          Length = 544

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/383 (18%), Positives = 132/383 (34%), Gaps = 45/383 (11%)

Query: 268 NIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------ 320
            + F  PT  Q       L        M+ I     GSGKTL  L+     + A      
Sbjct: 158 RLGFDKPTPIQCQGWPMAL----SGRDMVGI--SATGSGKTLAFLLPAIVHINAQPYLQP 211

Query: 321 --GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G   +++AP   LA Q      K+  +++I    + G +P+  +   L R       I
Sbjct: 212 GDGPIVLMIAPTRELAVQIQAECNKFGASSKIKNTCVYGGVPKGGQIADLRR----GVEI 267

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTA 428
            I T     D +   K        L+L   D     G + +L+    Q       L+ +A
Sbjct: 268 CICTPGRMIDMLSMGKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMWSA 327

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRK-----PIKTVIIPINRIDEVIERLKVVLSEGK 483
           T     + L +    D  ++T                 ++  ++    ++     + EG 
Sbjct: 328 TWPKEIVALANDFLTDFIQVTVGSLDLTANKRIKQIVEVMDDHQKYSSLQDHLRDIYEGG 387

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +    C           +   +  +    +       IHG  S  +++ V+  FK+G  +
Sbjct: 388 RIIIFC---------ETKRGADELSRNLRNTRYICKAIHGNKSQEERDYVLREFKDGRTQ 438

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+D+ D   ++  +        +H++ GR  R     + I  +    +  
Sbjct: 439 ILVATDVASRGLDIKDIRYVVNFDMPKNIEDYIHRI-GRTARAGNKGTSISFFTASNNGR 497

Query: 604 -SYTRLSVLKNTEDGFLIAEEDL 625
            +   + +++  E        DL
Sbjct: 498 LAGPLVKIMEEAEQEVPRELRDL 520


>gi|77461504|ref|YP_351011.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77385507|gb|ABA77020.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 622

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 131/378 (34%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  EPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGHPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q ++  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L    K   +   I 
Sbjct: 187 NLLFSATFSKDITDLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +        IHG  S   +   +  FK G  ++L+A
Sbjct: 246 AGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEVRILVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|261880679|ref|ZP_06007106.1| ATP-dependent RNA helicase DeaD [Prevotella bergensis DSM 17361]
 gi|270332631|gb|EFA43417.1| ATP-dependent RNA helicase DeaD [Prevotella bergensis DSM 17361]
          Length = 560

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 125/358 (34%), Gaps = 38/358 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAVIM 327
           T  QE  I +IL+          +     G+GKT   L+ + + ++ G         VIM
Sbjct: 25  TPVQEKCIPEILKGRD------LMGVAQTGTGKTAAYLLPILSMIDEGNYPKNSVNCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ +  +   +  +        +R     +     A +II T     
Sbjct: 79  SPTRELAQQIDQAMQGFAYHLDTVSSVAVYGGNDGNRYDQEMKSMRLGADVIIATPGRLI 138

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
             I    +        +L   D     G    +         +          +T++ ++
Sbjct: 139 SHITMGNIDLGKVNFFVLDEADRMLDMGFSDDIMKIASYLPKNC---------QTIMFSA 189

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC------PQIE 493
               DI K+ +          V + +++  E I++   V    +K   I           
Sbjct: 190 TMPNDIEKMAQNLLKNPAE--VKLAVSKPAEKIKQSAYVCYTTQKIEIIKHIFKAGDLKR 247

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               S  +  V++ N        +   +H  +    ++ +M  FK+G   +L+AT ++  
Sbjct: 248 VIIFSGSKQKVKQINQALAQLKINSGEMHSDLDQSQRDDIMYKFKSGQIDVLVATDIVAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           GID+ D +++I  +        +H++ GR  R +     I L +       +     L
Sbjct: 308 GIDIDDIAMVINYDVPRDSEDYVHRI-GRTARADRDGVAITLVNEDDMFAFHKIEQFL 364


>gi|160898343|ref|YP_001563925.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160363927|gb|ABX35540.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 598

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 119/346 (34%), Gaps = 40/346 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q  AI  +L           +     G+GKT    + M   +  G           
Sbjct: 24  PTPIQAQAIPAVLAGHD------LLAGAQTGTGKTAAFTLPMLQRLSQGQVPRNKFGGKG 77

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+++ P   LA Q  E ++ Y +   I   +I G +    +   +++       I++ 
Sbjct: 78  IRALVLTPTRELAAQVEESVRSYAKYLDINSTVIFGGVGMKPQIDRIKK----GVDILVA 133

Query: 382 THALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D      +    + ++++DE  R      +   +K      +L       ++L+
Sbjct: 134 TPGRLLDLQQQGFMDLSTVEVLVLDEADRMLDMGFIHDVKK------VLALVPKDKQSLL 187

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I  +      R P    + P N   + I ++   +  GKK   +   I E  
Sbjct: 188 FSATFSDEIRDLAN-GLLRNPQSIQVTPSNTTVQRITQVIHPVGRGKKKQVLLHIINENN 246

Query: 497 ESNFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            S                        S   +HG  S   +   +  FK G  + L+AT +
Sbjct: 247 WSQVLVFTRTKFGANNVAEFLTKNNISAMALHGNKSQSARTQALAGFKTGELRALVATDI 306

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
              GID+ +   ++     +     +H++ GR GR       + L 
Sbjct: 307 AARGIDIDELPHVVNYEIPNVSEDYVHRI-GRTGRAGREGHAVSLV 351


>gi|330886235|gb|EGH20136.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. mori str.
           301020]
          Length = 625

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVSRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|289625029|ref|ZP_06457983.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 516

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|289705043|ref|ZP_06501454.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
 gi|289558206|gb|EFD51486.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
          Length = 715

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 125/357 (35%), Gaps = 46/357 (12%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------ 319
             + ++ P+  QE+ I  +L           +     G+GKT    +   + +       
Sbjct: 64  EELGYTRPSPIQEATIPLLLDGRDV------VGLAQTGTGKTGAFALPALSRLAETTDVN 117

Query: 320 ---AGGQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQ 375
                 Q +++AP   LA Q  +    Y ++   + V  + G  P   +   L R     
Sbjct: 118 GRADTPQVLVLAPTRELALQVADAFDSYAKHLDDVSVLAVYGGSPYGPQLAGLRR----G 173

Query: 376 AHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A +++GT     D ++   L        +L   DE  R G  + +           +L +
Sbjct: 174 AQVVVGTPGRVIDHLERGSLDLSDLQTLVLDEADEMLRMGFAEEV---------DRILAS 224

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                +T + ++     I +I+ +     P +  +   +     I +  + +    K   
Sbjct: 225 TPDTKQTALFSATMPPAIRRISAQYLN-APEEVAVARQSTTSATIRQRYLQVGHQWKFEA 283

Query: 488 ICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +   +E ++          R+  E               I G ++   +E  ++  K G 
Sbjct: 284 LSRILETEEHDGVIAFVRTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKAGR 343

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
             +L+AT V   G+DV   S ++  +      + +H++ GR GR       +L   P
Sbjct: 344 VDILVATDVAARGLDVERISHVVNYDIPQDAESYVHRI-GRTGRAGRQGDAVLFMTP 399


>gi|323527279|ref|YP_004229432.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323384281|gb|ADX56372.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 530

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 120/342 (35%), Gaps = 30/342 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------AVEAGGQ 323
           +PT  Q  AI  +L           +     G+GKT    + +          A  +G +
Sbjct: 23  TPTPIQTQAIPAVLNG------GDLLAGAQTGTGKTAGFTLPILQRLHSMPPLAAASGKR 76

Query: 324 A---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           A   +I+ P   LA Q  E ++ Y +  ++   ++ G +    +  AL+        I++
Sbjct: 77  AVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALKS----GVDIVV 132

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  + E        R+           +L    P  + L+ ++ 
Sbjct: 133 ATPGRLLDHMQQKTIDLSHL-EILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSAT 191

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
              +I  + +      P    +   N   E + +    +   KK   +   I++      
Sbjct: 192 FSDEIKALADNLLD-SPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNWFQV 250

Query: 500 -----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +    R          S   IHG  S   +   +  FK+GT ++L+AT +   G
Sbjct: 251 LVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAARG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           ID+     ++  +  +     +H++ GR GR       + L 
Sbjct: 311 IDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLV 351


>gi|269960877|ref|ZP_06175247.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
 gi|269834317|gb|EEZ88406.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
          Length = 459

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 166/466 (35%), Gaps = 73/466 (15%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ ++  T  Q  ++  IL      N+   I QG  GSGKT    + + + +      
Sbjct: 19  LESLNYTHMTPIQALSLPAIL------NQRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 73  VQSLVLCPTRELADQVAKEIRTLGRSIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 128

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++  +        L+L   D     G Q  L           ++  A    
Sbjct: 129 GTPGRILDHLEKGRINLEELNTLVLDEADRMLDMGFQDAL---------DAIIEAAPKQR 179

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I +I ++   + P    +   +    + +    V     +   +   +
Sbjct: 180 QTLLFSATFPEKIEQIAQR-IMQSPEMIKVESTHDTSSIAQYFYNVEGSEARDEALANLL 238

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              +        N +  V+       H   S+  +HG +   +++  +  F N +  +L+
Sbjct: 239 LTHQPESAVVFCNTKKEVQNVADELHHKGFSVIDLHGDLEQRERDQALVQFANKSVSILV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH--------- 597
           AT V   G+DV +   +            +H++ GR GR          +          
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRI-GRTGRAGSKGLAFSFFGEKDGLRVAR 357

Query: 598 --------------PPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILG--IKQSGM 641
                         P  S     +  ++    DG        ++ + G+ILG    ++G+
Sbjct: 358 IEEYLDMDVVPATLPAKSNQQPYQAKMVTINIDGGKK-----QKVRAGDILGCLTGKNGI 412

Query: 642 PKFLIAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
               + +  L    + + + +  AK  L    +   ++G+  R  L
Sbjct: 413 TGAQVGKIHLFPMRAYVAVEKSVAKKALQTISN-GKMKGRQFRARL 457


>gi|254713301|ref|ZP_05175112.1| DEAD-box ATP dependent DNA helicase [Brucella ceti M644/93/1]
 gi|254716345|ref|ZP_05178156.1| DEAD-box ATP dependent DNA helicase [Brucella ceti M13/05/1]
 gi|261218127|ref|ZP_05932408.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261321026|ref|ZP_05960223.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|260923216|gb|EEX89784.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261293716|gb|EEX97212.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
          Length = 626

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 148/365 (40%), Gaps = 46/365 (12%)

Query: 272 SPTKSQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGG 322
           + T  Q + +  + L           ++    GSGKT+   +AMA  +        +AG 
Sbjct: 22  TLTAVQNAVLAPETLAS-------DLLVSAQTGSGKTVAFGLAMANTILEDELRFGDAGA 74

Query: 323 Q-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LA Q    ++    +T   +    G M     R+ALER     +HI++G
Sbjct: 75  PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GSHIVVG 130

Query: 382 THALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D I        Q   ++L   DE    G ++ L+           L  A    R
Sbjct: 131 TPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFI---------LGEAPEDRR 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I+++ ++        TV    ++  + I+ + + +   ++ + I   + 
Sbjct: 182 TLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHAD-IDYVAMPVPPHERDHAIINTLL 240

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                N       R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +        LH+  GR GR     +C+L+      +++   
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGTCVLVVPFSRRRSAERL 359

Query: 608 LSVLK 612
           L + K
Sbjct: 360 LHMAK 364


>gi|110633776|ref|YP_673984.1| DEAD/DEAH box helicase-like [Mesorhizobium sp. BNC1]
 gi|110284760|gb|ABG62819.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1]
          Length = 460

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 131/362 (36%), Gaps = 39/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            P   Q+ AI   L           +     GSGKT    + + + +            +
Sbjct: 48  EPKPIQKEAIPPFLAG------SDILGVAQTGSGKTAAFSLPILSKIIGLGTKRRPRTAR 101

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  + +++  +   +   ++ G +    R   ++R+A G   ++I T 
Sbjct: 102 ALILVPTRELAVQIEKVVRELAKGAHVSTALVLGGVS---RHSQIKRMAQG-VDVLIATP 157

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATPIPR 433
               D ++           L+L   D     G    ++   KAT P     L +AT    
Sbjct: 158 GRLTDLVRDGAVVLSETTWLVLDEADRMLDMGFINDVRRIAKATHPARQTALFSATMPRE 217

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L S    +  +I   P G     I+  +I      +     +++  E      I  +
Sbjct: 218 IEALASSLLKEPVRIEVSPQGTTAAEIRQSVIMARTKQKRKLLSEMLADEKMAQVIIFSR 277

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +   +R     +H     A+IHG  S   ++  ++ F+ G  ++L+AT + 
Sbjct: 278 T--------KHGADRVTKDLQHDGFQAAVIHGNKSQNARQRALNDFREGAVRILVATDIA 329

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV   S ++  +      + +H++ GR GR       I L  P           V+
Sbjct: 330 ARGIDVPGISHVVNFDLPDEAESYVHRI-GRTGRNGAEGEAITLCDPGEVSKLRQVERVI 388

Query: 612 KN 613
           +N
Sbjct: 389 RN 390


>gi|58259441|ref|XP_567133.1| ATP-dependent RNA helicase ded1 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134107531|ref|XP_777650.1| hypothetical protein CNBA7700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687306|sp|Q5KN36|DED1_CRYNE RecName: Full=ATP-dependent RNA helicase ded1
 gi|50260344|gb|EAL23003.1| hypothetical protein CNBA7700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223270|gb|AAW41314.1| ATP-dependent RNA helicase ded1, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 637

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 141/382 (36%), Gaps = 56/382 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------E 319
           +PT  Q+ +I  +            +     GSGKT   L  + +A+            +
Sbjct: 182 TPTPVQKYSIPIVADGRD------LMACAQTGSGKTGGFLFPILSALFTYGPSTPPVEQD 235

Query: 320 AG----------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
            G            A+++AP   L  Q +E  +K+   + +   ++ G      + +AL+
Sbjct: 236 TGYGYRRTKKVYPTALVLAPTRELVSQIHEEARKFAYRSWVRPAVVYGGADIGSQMRALD 295

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP 421
           R       ++  T     D I+  K        L+L   D     G + +++        
Sbjct: 296 R----GCDLLSATPGRLVDLIERGKISLANVKYLVLDEADRMLDMGFEPQIRRIVDEEDM 351

Query: 422 ------HVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                   L+ +AT     + L  + L +     +    +  + I   +  ++  D+   
Sbjct: 352 PGVLERQTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQRVEYVDDQDKRSL 411

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L ++L+E +    I   +E       + + +           +   IHG  +  ++E+ 
Sbjct: 412 LLDLLLAE-QSGGLILVFVET------KRMADTLCDFLCSRRHNATSIHGDRTQREREAA 464

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           + +FK+G   +L+AT V   G+D+ + + +I+ +  +      H++ GR GR   + +  
Sbjct: 465 LYAFKSGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAEYTHRI-GRTGRAGNVGTST 523

Query: 594 LLYHPPLSKNSYTRLSVLKNTE 615
             ++   +      + +LK   
Sbjct: 524 AFFNRGNTNIGKDLIELLKEAN 545


>gi|291407215|ref|XP_002720005.1| PREDICTED: CG7878-like [Oryctolagus cuniculus]
          Length = 635

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 133/381 (34%), Gaps = 42/381 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---------AGG 322
            PT  Q  A   ILQ +        I     G+GKTL  L+     ++          G 
Sbjct: 252 KPTPIQSQAWPVILQGID------LIGVAQTGTGKTLSYLMPGFIHLDSQPTSREERNGP 305

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++ P   LA Q      KY+         I G   +  + + + +       III T
Sbjct: 306 GMLVLTPTRELALQVESECSKYS-YKGFKSSCIYGGGNRRGQIEDIAK----GVDIIIAT 360

Query: 383 HALFQD-----SIQYYK---LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP 432
                D      +       L+L   D+    G + ++   L         ++ +AT   
Sbjct: 361 PGRLNDLQLNNHVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTVMTSATWPD 420

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             R L  + L D  +  +              + +   +E    ++  L        +  
Sbjct: 421 AIRRLAHSYLKDPMMVYVGTLDLVAVSTVQQNVIVTTEEEKRALIQEFLENMTPRDKVIV 480

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +  K  ++  +       +       I  +HG     D+E  ++ F+ G  K+LIAT +
Sbjct: 481 FVSRKITADDLASDLGIQGI------PIESLHGDREQSDREQALEDFRTGKVKILIATDL 534

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D + +   +        +H++ GR GR  ++ + I L  P  +K +   + +
Sbjct: 535 ASRGLDVNDITHVYNYDFPRNIEEYVHRI-GRTGRAGKVGTSITLVTPNDAKIADELIKI 593

Query: 611 LKNTEDGFLIAEEDLKQRKEG 631
           L+          EDL +  EG
Sbjct: 594 LERANQNV---PEDLVKMAEG 611


>gi|209693767|ref|YP_002261695.1| ATP-dependent RNA helicase RhlB [Aliivibrio salmonicida LFI1238]
 gi|226739529|sp|B6EPA4|RHLB_ALISL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|208007718|emb|CAQ77831.1| ATP-dependent RNA helicase RhlB [Aliivibrio salmonicida LFI1238]
          Length = 434

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/435 (18%), Positives = 152/435 (34%), Gaps = 59/435 (13%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P  ++G  A+  +       T  Q  A+  +L             Q   G+GKTL  L A
Sbjct: 18  PQVLDGLNAKGFINC-----TPIQAKALPVLLAGQD------IAGQAQTGTGKTLAFLAA 66

Query: 314 MAAAVEA----------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
               +              +A+IMAP   LA Q Y   +    +T +   +  G      
Sbjct: 67  TFNHLLTTPAPEGRKITQPRAIIMAPTRELAIQIYNDAESLIASTGLKAALAYGG----E 122

Query: 364 RRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           R +  +++      I+IGT     D      I +  + +V++DE  R      +K  +  
Sbjct: 123 RYEKQQKVIEAGVDILIGTTGRIIDFYKQGQIDFKAIQVVVLDEADRMFDLGFIKDIRFV 182

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                  M A      ++ ++     + ++  +   ++P   V+ P  +   +I      
Sbjct: 183 ----FRRMPAPAERLNMLFSATLSYRVQELAFEHM-QEPEHVVVEPDQKTGHLITEELFY 237

Query: 479 LSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
            S   K   +   IEE+         N +   E            + ++ G +    +E 
Sbjct: 238 PSNDHKMALLQTLIEEEWPDRAIIFANTKHKCELVWGHLAADKHRVGLLTGDVPQKKRER 297

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +++ F  G   +L+AT V   G+ +   + +   +  +     +H++ GR GR  E  + 
Sbjct: 298 ILEEFTKGEVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRI-GRTGRAGESGNS 356

Query: 593 ILLYHPPLSKNSYTRLSVLKNT-----EDGFLIAEEDL-----------KQRKEGEILGI 636
           I       + N       ++++      D   +  EDL           + R+ G   G 
Sbjct: 357 ISFACEEYAINLPAIEEYIEHSIPQSDYDTSAL-LEDLPAPIRLQRRPPQNRRNGSNNGQ 415

Query: 637 KQSGMPKFLIAQPEL 651
           +QSG  K    +P  
Sbjct: 416 RQSGNRKHSRPRPPR 430


>gi|302188635|ref|ZP_07265308.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. syringae
           642]
          Length = 445

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/362 (20%), Positives = 134/362 (37%), Gaps = 37/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA------AAVEAGGQAV 325
            PT  Q +AI   LQ    +      +    GSGKT   ++ +       A V    +AV
Sbjct: 22  EPTPVQAAAIPLALQGRDLR------VTAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAV 75

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + +++++Q T +   +ITG      +   L ++      I+IGT   
Sbjct: 76  ILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV----PDILIGTPGR 131

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPI---P 432
             + +    L L  V        D     G  + ++    + A     +L +AT      
Sbjct: 132 LLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGL 191

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R ++   L D    ++          +  II  +      + L  +L+       I    
Sbjct: 192 REMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETYKKAIIFT- 250

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N +++ +R             ++HG     D+++ +D  K G  K+++AT V  
Sbjct: 251 ------NTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV    ++I  +    G   +H++ GR GR       I L          +    LK
Sbjct: 305 RGLDVEGLDMVINFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICHGDWNLMSSVERYLK 363

Query: 613 NT 614
            +
Sbjct: 364 QS 365


>gi|302184790|ref|ZP_07261463.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           syringae 642]
          Length = 442

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 134/352 (38%), Gaps = 40/352 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + +PT  Q  AI  +L           +     G+GKT    + +   +   G  
Sbjct: 16  LEALGYQTPTPVQTQAIPPVLAGRD------LMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+++AP   LA Q +E I++Y ++  +      G +    +   L R      
Sbjct: 70  VAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRR----GV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLTQK--ATAPHVLLM 426
            +++ T     D     ++++ +L  +I+DE  R    G  + L+            LL 
Sbjct: 126 DVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLF 185

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKK 484
           +AT      +L +    D   I   P       +K  ++ +++  +      + +   KK
Sbjct: 186 SATFSDEIRLLAAQMLNDPLTIEVSPRNVAAASVKQWVVTVDKKRKA----DLFIHLMKK 241

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             W    +  K       +V+R  +L  +       IHG      ++  +D FK+   K+
Sbjct: 242 HRWGQVLVFAKTRVGVDQLVDRLQALGMNADG----IHGDKPQATRQRALDRFKSNEVKI 297

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           L+AT V   G+D+ D   ++  +        +H++ GR GR       I L 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGLTGEAISLV 348


>gi|299066188|emb|CBJ37372.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           CMR15]
          Length = 481

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 129/360 (35%), Gaps = 34/360 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----------- 322
           T  Q +AI  ++           +     G+GKT    + +   +               
Sbjct: 25  TPIQAAAIPVVIAGRDV------MGAAQTGTGKTAGFSLPIIQNLLPDASTSASPARHPV 78

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q Y+ + KY ++T +   ++ G +    + + L R       +++ T
Sbjct: 79  RALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQTEQLRR----GVEVLVAT 134

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D +Q   + L  V          R+           ++       +TL+ ++   
Sbjct: 135 PGRLLDHVQQRSVNLSQV-RMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSATFS 193

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---- 498
            +I K+        P    +   N   + + ++   + +G K   +   + ++ E     
Sbjct: 194 PEIKKLAASYLRH-PQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQRAEQGLPS 252

Query: 499 ------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N +    R     E    +   IHG  +  ++   +++FK GT  +L+AT V  
Sbjct: 253 QCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQGTVDVLVATDVAA 312

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+     +I  +        +H++ GR GR       + L+ P   +       ++K
Sbjct: 313 RGLDISQMPCVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLFAPGDERLLADIEKLIK 371


>gi|294673582|ref|YP_003574198.1| DEAD/DEAH box helicase [Prevotella ruminicola 23]
 gi|294472821|gb|ADE82210.1| ATP-dependent helicase, DEAD/DEAH box family [Prevotella ruminicola
           23]
          Length = 446

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 124/345 (35%), Gaps = 36/345 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL           +     G+GKT   L+ + + ++ G        AVIM
Sbjct: 25  TPIQEQCIPEILDGYDV------LGVAQTGTGKTAAYLLPILSELDDGDYPKDAINAVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ +      +  +        +R     R     A ++I T     
Sbjct: 79  SPTRELAQQIDQAMQGFGYYLDDVSSVAVYGGNDGNRYDQELRSMRMGADVLIATPGRLL 138

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP--RTL 435
             ++   L        +L   D     G  + +   + +   +   ++ +AT     R L
Sbjct: 139 SHLKVGNLDLSRCSFFVLDEADRMLDMGFIEDIMKIVKELPASCQRIMFSATMPKKIREL 198

Query: 436 VLTSLGDIDISKIT-EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
            +  L +    +I   KPA +      +    +  ++I+    +  +G     I      
Sbjct: 199 AVQLLHNPVEIQIAVSKPAEKIHQMAYVCYEPQKLKIIQD---IFKKGDLQRVIIF---- 251

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
              S  +  V+      +    +   +H  +S  +++  M  FK G   +L+AT ++  G
Sbjct: 252 ---SGKKERVKEVTRKLKSMHINCDQMHSDLSQAERDEAMYRFKAGQTDVLVATDIVARG 308

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           ID+ D  ++I  +        +H++ GR  R +     I      
Sbjct: 309 IDIDDIRLVINYDVPSDSEDYVHRI-GRTARADRDGEAITFVSDD 352


>gi|160883549|ref|ZP_02064552.1| hypothetical protein BACOVA_01521 [Bacteroides ovatus ATCC 8483]
 gi|237722794|ref|ZP_04553275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293371813|ref|ZP_06618223.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f]
 gi|299147643|ref|ZP_07040707.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23]
 gi|156110962|gb|EDO12707.1| hypothetical protein BACOVA_01521 [Bacteroides ovatus ATCC 8483]
 gi|229447316|gb|EEO53107.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292633265|gb|EFF51836.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f]
 gi|298514430|gb|EFI38315.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23]
          Length = 374

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 138/362 (38%), Gaps = 41/362 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQA 324
           PT  Q  AI   L       +   +     G+GKT    I +   ++         G +A
Sbjct: 24  PTPIQGEAIPAALA------KRDILGCAQTGTGKTASFAIPIIQHLQMNKEAAKCRGIKA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I  Y + TQ+   +I G + Q  +   L +       I++ T  
Sbjct: 78  LILTPTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVDMLHK----GIDILVATPG 133

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I   K+   ++DE  R      +   +       +L       +TL  ++
Sbjct: 134 RLLDLMNQGHIHLDKIQYFVLDEADRMLDMGFIHDIK------RILPKLPKEKQTLFFSA 187

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                I  +T     + P++  I P +   + IE++   + + +K+  +   +++ ++  
Sbjct: 188 TMPDTIISLTNS-LLKNPVRISITPKSSTVDAIEQMVYFVEKKEKSLLLVSILQKSEDQS 246

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   ++   +          IHG  S   ++  + +FK+G  ++++AT +   
Sbjct: 247 VLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRVMVATDIAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+ +  ++I  +        +H++ GR GR     + +       S+     ++ ++ 
Sbjct: 307 GIDINELPLVINYDLPDVPETYVHRI-GRTGRAGNTGTALTFC----SQEERKLVNDIQK 361

Query: 614 TE 615
             
Sbjct: 362 LT 363


>gi|82703770|ref|YP_413336.1| DEAD/DEAH box helicase-like [Nitrosospira multiformis ATCC 25196]
 gi|82411835|gb|ABB75944.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
           25196]
          Length = 510

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 127/358 (35%), Gaps = 30/358 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q  AI  IL+          +     G+GKT    + M   +++G          
Sbjct: 23  DPTPIQTQAIPHILEGRD------IMGAAQTGTGKTASFTLPMLNLLQSGANTSASPARH 76

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             + +I+ P   LA Q +E +K Y +   +    + G +    + + L         I++
Sbjct: 77  PIRTLILVPTRELAIQVHESVKTYGKYLPLRYAAVYGGVDMEPQTRELRA----GVEILV 132

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  V E        R+           +L       ++L+ ++ 
Sbjct: 133 ATPGRLLDHVQQKAINLSKV-EILILDEADRMLDMGFLPDIKRILALLPSQRQSLMFSAT 191

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
              +I K+  K   R+P+   +   N I E+I  +   +   +K   +   I+ +     
Sbjct: 192 FSDEIKKLAGK-LLREPVLVEVARRNTITELITHVVHPVVRERKRELLAHLIKSQDLQQV 250

Query: 500 -----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +    R     E    S   IHG  +   +   +  FK G  ++L+AT V   G
Sbjct: 251 LVFARTKHGASRLAHQLERDHISATAIHGDKTQTQRTEALAKFKQGVVRVLVATDVAARG 310

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+ +   ++           +H++ GR GR       + L     ++       +LK
Sbjct: 311 LDIEELPHVVNFELPTNPEDYVHRI-GRTGRAGTKGDAVSLVCEDEAELLKGIEKLLK 367


>gi|330826029|ref|YP_004389332.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|329311401|gb|AEB85816.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           K601]
          Length = 568

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 133/364 (36%), Gaps = 42/364 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q  AI  +L           +     G+GKT    + M   +  G           
Sbjct: 24  PTPIQAQAIPAVLAGHD------LLAGAQTGTGKTAAFTLPMLHRLAQGQAPTSRFGGRG 77

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+++ P   LA Q  E ++ Y ++  I   +I G +    + + ++R       +++ 
Sbjct: 78  VRALVLTPTRELAAQVEESVRAYGKHLDIKSTVIFGGVGMNPQIERIKR----GVDVLVA 133

Query: 382 THALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT-- 429
           T     D      +   ++ ++++DE  R      +   +K       A   LL +AT  
Sbjct: 134 TPGRLLDLQQQGFMDLSQVEILVLDEADRMLDMGFIHDVKKVLALLPKAKQSLLFSATFS 193

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              R L    L D    ++T +    + I  VI P+ R  +     +V+L   ++  W  
Sbjct: 194 DEIRELAAGLLNDPQSIQVTPRNTTVQRISQVIHPVGRGKKK----QVLLHIIQQHDWSQ 249

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
             +  + +    +V E          +    +HG  S   +   ++ FK+G  + L+AT 
Sbjct: 250 VLVFTRTKFGANNVAEYLTKHGVQAMA----LHGNKSQSARTQALEGFKSGQIRALVATD 305

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   GID+ D   ++     +     +H++ GR GR  +    + L              
Sbjct: 306 IAARGIDIDDLPHVVNYEIPNVPEDYVHRI-GRTGRAGKEGQAVSLVCMDEEGFMMEIER 364

Query: 610 VLKN 613
             K 
Sbjct: 365 FTKQ 368


>gi|170105186|ref|XP_001883806.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164641441|gb|EDR05702.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 662

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 138/393 (35%), Gaps = 59/393 (15%)

Query: 265 ILRNIPF----SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA--- 317
           +L NI F    +PT  Q+ +I  +            +     GSGKT   L  + +A   
Sbjct: 187 LLENIGFAMYTTPTPVQKYSIPIVAGGRD------LMACAQTGSGKTGGFLFPILSASFA 240

Query: 318 ------------------VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
                              +A   A+I+AP   L  Q ++  +K+   + +   ++ G  
Sbjct: 241 EGPRPPPAQSSAGGYGRARKAYPTALILAPTRELVSQIHDEARKFAYRSWVRPAVVYGGA 300

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQR 411
               + + +ER       ++  T     D I+  +        L+L   D     G + +
Sbjct: 301 DINQQLRLIER----GCDLLSATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEPQ 356

Query: 412 LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
           ++   +        M +T   +TL+ ++    DI  +  K   +  +   +  +    E 
Sbjct: 357 IRRIVQGED-----MPSTADRQTLMFSATFPRDIQMLA-KDFLKDYVFLSVGRVGSTSEN 410

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESN---------FRSVVERFNSLHEHFTSSIAIIH 522
           I +    + +  K   +   +  + + +          + + +  +            IH
Sbjct: 411 ITQKIEYVEDLDKRSVLLDILASQPKEDLGLTLVFVETKRMADMLSDFLMGNNLPATSIH 470

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G  +  ++E  + +F+ G   +++AT V   G+D+ + + ++  +        +H++ GR
Sbjct: 471 GDRTQREREMALQTFRTGRTPIMVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRI-GR 529

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
            GR          ++          + +L+   
Sbjct: 530 TGRAGNTGVSTAFFNRGNKNIVRDLVELLREAN 562


>gi|332652507|ref|ZP_08418252.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium
           D16]
 gi|332517653|gb|EGJ47256.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium
           D16]
          Length = 628

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 126/357 (35%), Gaps = 35/357 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAV 325
            P+  QE AI   L           +     G+GKT      +   +          +A+
Sbjct: 23  KPSPIQEQAIPPALAGRDV------LGCAQTGTGKTCAFAAPILQRLSNKPASGHPIRAL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E  + Y ++  +   +I G + QA + + L +       I++ T   
Sbjct: 77  ILTPTRELAIQIGESFEHYGRHLALRCAVIFGGVGQAPQVEKLGK----GVDILVATPGR 132

Query: 386 FQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D      I    L + ++DE  R      +   +K      +L       +TL  ++ 
Sbjct: 133 LGDLYQQGFIHLNDLEIFVLDEADRMLDMGFIHDVKK------ILKWLPEKKQTLFFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
              +I+++        P +  + P++   E I +    +  G K   +   +++    N 
Sbjct: 187 MPKEIAELVNS-LLHHPARVAVDPVSSPVEAIRQSVYFVDRGNKTKLLSLLMDQLGVKNA 245

Query: 500 -----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +    +          + A IHG  S   ++  +  FK+G  + L+AT +   G
Sbjct: 246 LVFTRTKHGANKVARDLVKAGITAAAIHGNKSQTARQQALADFKSGAIRCLVATDIAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           +D+ + S +   N        +H++ GR GR     + +                ++
Sbjct: 306 LDIEELSHVFNYNLPEVPETYVHRI-GRTGRAGHGGTAVAFCDFSEKPLLKEIEKLI 361


>gi|161521775|ref|YP_001585202.1| ATP-dependent RNA helicase DbpA [Burkholderia multivorans ATCC
           17616]
 gi|189352063|ref|YP_001947690.1| ATP-dependent RNA helicase DbpA [Burkholderia multivorans ATCC
           17616]
 gi|221210620|ref|ZP_03583600.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD1]
 gi|160345825|gb|ABX18910.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
 gi|189336085|dbj|BAG45154.1| ATP-independent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|221169576|gb|EEE02043.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD1]
          Length = 464

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/460 (17%), Positives = 166/460 (36%), Gaps = 60/460 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +++   L           I Q   GSGKT    +A+ + ++A    
Sbjct: 22  LEQLGYVDMTPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLSRLDARRFD 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+ P   LA Q  + +++  +    + V  + G  P   + ++LE      AHI++
Sbjct: 76  VQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH----GAHIVV 131

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT     D +    L L      ++DE  R           K            P  +TL
Sbjct: 132 GTPGRIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARQ------CPPTRQTL 185

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+K++++       K V +     D  I +    ++E ++ + +   +   
Sbjct: 186 LFSATYPDGIAKLSQQFLRSP--KEVKLEERHDDSKIRQRFYEVTETERLHAVGMLLNHY 243

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +        N +        +          +HG +   +++ V+  F N +C +L+AT 
Sbjct: 244 RPVSTIAFCNTKQQCRDLIDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR ++    + L              
Sbjct: 304 VAARGLDIAQLEAVINVDVTPDPEVHVHRI-GRTGRADQAGWALSLASMDEMGRVGAIEQ 362

Query: 610 VLKNTEDGFLIA-------------EEDLKQRK-------EGEILG--IKQSGMPKFLIA 647
             K   +   ++              E L+           G++LG     +G     I 
Sbjct: 363 AQKRDVEWRPLSELTPASDAPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIG 422

Query: 648 QP--ELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           +       + + + R  A   L +  +   ++G+ +++ L
Sbjct: 423 KINVTEFSTYVAVERGIAHDALRKL-NAGKIKGKRVKVRL 461


>gi|289671300|ref|ZP_06492375.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 458

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/460 (18%), Positives = 165/460 (35%), Gaps = 63/460 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + ++  T  Q  ++  ILQ +        I Q   GSGKT    + +   ++     
Sbjct: 17  IDALGYTVLTPIQAQSLPPILQGLDV------IAQAPTGSGKTAAFGLGLLQKLDPALTR 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + ++K       + + ++TG MP   +  +LE        +++
Sbjct: 71  AQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEA---HDPQVVV 127

Query: 381 GTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    Q+  +           L+L   D     G ++ ++        H          
Sbjct: 128 GTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKH---------- 177

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R  +L S    DI +   +   + P++  +   +   E+ ++   V    ++       +
Sbjct: 178 RQSLLFSATFPDIIRTLAREILKDPVEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLL 237

Query: 493 EEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
               E      N R  V+      + F  S   +HG M   D++ V+  F N +C +L+A
Sbjct: 238 RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY-- 605
           + V   G+DV D S ++            H++ GR  R  +    + L  P  +      
Sbjct: 298 SDVAARGLDVEDLSAVVNYELPTDTETYRHRI-GRTARAGKHGLALSLVAPRETARVQAL 356

Query: 606 --------TRLSVLKNTEDGFLI---AEEDLKQ-------RKEGEILG--IKQSGMPKFL 645
                           T     +   A   L+         + G+ILG    ++G+    
Sbjct: 357 EAAQGQPLKWSRAPLATARPAQLPHAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAA 416

Query: 646 IAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           I +  ++   S + IAR      L        ++G+  R+
Sbjct: 417 IGKIAIYPTRSYVAIARAQVAKALAHL-HAGKIKGRRFRV 455


>gi|198242882|ref|YP_002217254.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937398|gb|ACH74731.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326625031|gb|EGE31376.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 629

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 163/443 (36%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LTDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L AT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LTATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 SAE---GEELDLETLAAALLKMA 432


>gi|161504014|ref|YP_001571126.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865361|gb|ABX21984.1| hypothetical protein SARI_02107 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 455

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 131/362 (36%), Gaps = 38/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+ AI  +L+          +     G+GKT    + +   +             
Sbjct: 23  EPTPIQQQAIPAVLEGRD------LMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRRPV 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E ++ Y++   I   ++ G +    +   L     G   +++ T
Sbjct: 77  RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLR----GGVDVLVAT 132

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D     +++  ++ ++++DE  R      +           +L    P  + L+ 
Sbjct: 133 PGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDI------RRVLAKLPPKRQNLLF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    DI  + EK     P++  +   N   E + +    + + +K   +   I +   
Sbjct: 187 SATFSDDIKALAEK-LLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSLLIGQGNW 245

Query: 498 SN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F       N L E         A IHG  S   +   +  FK+G  ++L+AT + 
Sbjct: 246 QQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDLRVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ +   ++     +     +H++ GR GR       + L      K       +L
Sbjct: 306 ARGLDIEELPHVVNYELPNVPEDYVHRI-GRTGRAAATGEALSLVCIDEHKLLRDIEKLL 364

Query: 612 KN 613
           K 
Sbjct: 365 KK 366


>gi|221504486|gb|EEE30159.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 1544

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/378 (18%), Positives = 137/378 (36%), Gaps = 43/378 (11%)

Query: 272  SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
             P   Q  AI  ++           I   + GSGKTL   + +   V +  Q        
Sbjct: 995  EPFPIQMQAIPCLMCGRDV------IAVAETGSGKTLAYGLPLIRHVLSVKQQDFRDGAI 1048

Query: 324  AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            A+++AP   L  Q ++ I +  +   +      G      +  A++R       +I+GT 
Sbjct: 1049 ALVIAPTRELCNQIFKEINRCCKLVDLNAVACYGGAGIGSQLGAIKR----GVEVIVGTP 1104

Query: 384  ALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
                D +           ++  +++DE  R                  ++ ++ P  +T 
Sbjct: 1105 GRLIDILTMNGGRLTSLKRVTFIVLDEADRMFDFGFEPQVTS------IIASSRPDRQTC 1158

Query: 436  VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            + ++     I  +  +   +KP++ ++    R    +++   V+ E +K + +   + E 
Sbjct: 1159 LFSATFPPHIEALARR-ILQKPVEIIVGEKGRTAANVQQYVEVMEEERKFFRLLQLLGEW 1217

Query: 496  KES--------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +E               E F  L ++   + A +HG     D+E  +  F++G   LLIA
Sbjct: 1218 QEHGSVIIFVNRQVEADELFTELLKYGYQA-ATLHGGQDQTDREFTIQEFQDGVRTLLIA 1276

Query: 548  TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
            T+V   G+D     ++I     +     +H++ GR GR   I           +  +   
Sbjct: 1277 TSVAARGLDCKHCVLVINMTCPNHIEDYVHRI-GRTGRAGRIGVAYTFLTKEDADKADDL 1335

Query: 608  LSVLKNTEDGFLIAEEDL 625
               L  +      A  DL
Sbjct: 1336 EKALTQSGQAVPQALSDL 1353


>gi|262191754|ref|ZP_06049928.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|262032393|gb|EEY50957.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
          Length = 406

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 132/337 (39%), Gaps = 30/337 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 22  QPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 75

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E + +      +    + G + +  ++ AL        +I++ T     D 
Sbjct: 76  TRELAMQVSEVLTQVGAPLGLNTLCLCGGVDKTEQQNALAE----NPNILVATTGRLFDL 131

Query: 390 IQ----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            Q      ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 132 TQSGLSLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTASVRQTVMCSATFSDD 184

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ + S     + 
Sbjct: 185 LKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWSQVLVFIG 244

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S   +E+ +  FK+GT ++LIAT ++  GI +  
Sbjct: 245 AKENADSLTKKLNKAGIVATALHGDKSQAQREAALAEFKDGTTQVLIATDLLARGIHIEQ 304

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             ++I           +H++ GR  R  +    + L 
Sbjct: 305 LPVVINFELPMHAQTYVHRV-GRTARAGQQGIALSLV 340


>gi|227327833|ref|ZP_03831857.1| ATP-dependent RNA helicase DeaD [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 635

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/413 (20%), Positives = 155/413 (37%), Gaps = 48/413 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LTDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLNNLKPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    ++++   + V  + G      R     R   G A I++
Sbjct: 75  PQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGG----QRYDVQLRALRGGAQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAQHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S IT +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTV--QGMRKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIA-EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
                 +K T     +   E L QR+  +     Q    +   +  +++ +LL
Sbjct: 358 RNVERTMKLTIPEVELPNAELLGQRRLAKFAAKVQ---QQLESSDLDMYRALL 407


>gi|207858530|ref|YP_002245181.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206710333|emb|CAR34691.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 629

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 164/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LTDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW--GMRKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 SAE---GEELDLETLAAALLKMA 432


>gi|302345341|ref|YP_003813694.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149991|gb|ADK96253.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 573

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 127/363 (34%), Gaps = 44/363 (12%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL+          +     G+GKT   L+ + + +  GG        VIM
Sbjct: 25  TPVQEKCIPEILKGHDV------LGVAQTGTGKTAAYLLPVLSKLADGGYPESAINCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +P   LAQQ  + ++ +      +    + G        + L+ +A G A ++I T   F
Sbjct: 79  SPTRELAQQIDQGMQGFAYYLDGVSCVAVYGGNDGNRYDQELKSLALG-ADVVIATPGRF 137

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLV 436
              I    +        IL   D     G    +    K        ++ +AT   +   
Sbjct: 138 ISHISLGNVDLSKVSFFILDEADRMLDMGFADDIMTIAKKLPATCQTIMFSATMPAKIEE 197

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           L      +  +I              + +++  E I++   V  E +K   I    +   
Sbjct: 198 LAKTLLKNPVEIK-------------LAVSKPAEKIQQTAYVCYETQKMGIIKDIFKAGD 244

Query: 497 ESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +  V++          +   +H  +    +  VM  FK+G   +L+AT +
Sbjct: 245 LKRVIIFSGSKQKVKQIAGSLNRMHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDI 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +  GID+ D +++I  +  H     +H++ GR  R +     I   +           S 
Sbjct: 305 VSRGIDIDDIAMVINYDVPHDAEDYVHRI-GRTARADRDGKAITFVNEDDIYFFQQIESF 363

Query: 611 LKN 613
           L+ 
Sbjct: 364 LEK 366


>gi|308813391|ref|XP_003084002.1| putative RNA helicase, DRH1 (ISS) [Ostreococcus tauri]
 gi|116055884|emb|CAL57969.1| putative RNA helicase, DRH1 (ISS) [Ostreococcus tauri]
          Length = 1118

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/460 (16%), Positives = 159/460 (34%), Gaps = 70/460 (15%)

Query: 220 WTSPARERLAYDELLA--GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI---PF-SP 273
             +P  +R+A  E      QI++    ++ +         + K    + + +    + +P
Sbjct: 50  PPTPTLKRVASKEDFRKEHQISIKNACERTRDLEPYVTFDDAKFPAALRKALKAQGYDAP 109

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQ--------- 323
           T  Q  A   +L+          +     GSGKT   L+   A +   G Q         
Sbjct: 110 TPIQAEAWPILLKGKDV------VAIAKTGSGKTCGFLLPALAKIVAEGTQKAPEMQLVD 163

Query: 324 -----------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                       +++AP   LA Q ++   K+         ++ G   +  + +AL    
Sbjct: 164 GRWRPGAVTPSVIVLAPTRELAIQIHDECAKFCPAAGCRSAVLYGGAAKGDQLRALRS-- 221

Query: 373 HGQAHIIIGTHALFQD-------------SIQYYKLILVIVDEQHRFGVQQRL--KLTQK 417
              A +++ T     D             +++   ++L   D     G + ++       
Sbjct: 222 --GADVVVATPGRLNDFLEPPPGFTAPVSAVKAAYVVLDEADRMLDMGFEPQIKKIFKLC 279

Query: 418 ATAPHVLLMTATPIP--RTLVLTSLGDIDISKI----TEKPAGRKPIKTVIIPIN--RID 469
            +A   ++ TAT     + +           +I     +  A +   +TV +     + D
Sbjct: 280 PSARQTVMFTATWPKGVQKIADAFTTKPIHIQIGSGGDKLTANKSITQTVEVVEEEEKFD 339

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             +  LK  L + +               + R        L +   SS   IHG     +
Sbjct: 340 RCVAILKKELGKNETCIMFAGTKRRCDFLDRR--------LKQVGFSSAGSIHGDKDQYE 391

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E V+D+F+ G   +L+AT V   G+D+   + +I+ +        +H++ GR GR  + 
Sbjct: 392 REMVLDNFRRGRGNILVATDVAARGLDIPGVAAVIVYDFPLQVEDYVHRI-GRTGRAGKD 450

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
                 +       +   + +L+       +A + + QRK
Sbjct: 451 GKAFTFFTKDNRGAANELIEILQGAGQTVPLALQAM-QRK 489


>gi|330865776|gb|EGH00485.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 500

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|313205812|ref|YP_004044989.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445128|gb|ADQ81483.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315022792|gb|EFT35816.1| Cold-shock DEAD-box protein A [Riemerella anatipestifer RA-YM]
          Length = 554

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 166/444 (37%), Gaps = 65/444 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           +PT+ Q+ +I  IL D+        I     G+GKT    + +   ++      Q +++ 
Sbjct: 24  TPTEIQKQSIPFILSDV-----RDLIALAQTGTGKTAAFSLPILDMIDDTSRKIQLLVLC 78

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   L  Q  + IK Y++    I    + G      + ++L      +  II+GT     
Sbjct: 79  PTRELCLQIAKDIKNYSKYQPNIKSVAVYGGSSITDQIRSLRD----KPQIIVGTPGRVI 134

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRTLVLT 438
           D I          + L+L   DE    G +  L+           +++ TP   +TL+ +
Sbjct: 135 DLINRKALDFSSIHWLVLDEADEMLSMGFKDDLE----------TILSETPETKQTLLFS 184

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +  + ++ +I++      P +  +  IN + + I     V++  +K   +   I+     
Sbjct: 185 ATMNKEVERISKSYLT-NPHRISVGSINAVKKNISHEYYVVNYRQKKEALKRLIDANPNQ 243

Query: 498 -----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R   +           +   +HG +S   +++VM  F+     +L+AT V  
Sbjct: 244 YSIIFCRTRMEAKEVADYLMQNGYAADALHGDLSQAQRDTVMLKFRLKNIDILVATDVAA 303

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   + +I  +        +H+  GR GR  +    + L  P  +        +  
Sbjct: 304 RGLDVDSLTHVIHYSLPDDPEVFVHR-SGRTGRAGKDGISMALIKPEET---RKLKHIKV 359

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQ----PELHDSLLEIARKDAKHILT 668
            T     I  ++    K  +I+  + +G+ + L  +     +  DSL+            
Sbjct: 360 QT----QIELKEKPIPKGEDIIKAQVAGVFEHLFTEHETYFDFDDSLI------------ 403

Query: 669 QDPDLTSVRGQSIRILLYLYQYNE 692
             PDL+    + +   L  +Q  +
Sbjct: 404 --PDLSQFSKEELVHQLLQFQLRD 425


>gi|229496684|ref|ZP_04390398.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316581|gb|EEN82500.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
          Length = 451

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 123/371 (33%), Gaps = 48/371 (12%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 +   ++   +       PT  QE+ I  +L+          +     G+GKT  
Sbjct: 1   MNFFDFDFADEVLDGLDAMNFSEPTPIQEATIPPLLEGRD------LLGCAQTGTGKTAA 54

Query: 310 ALIAMAAAVEAGG------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
            L+ +   +  G       +A++MAP   LAQQ  + I  +     I    I G    + 
Sbjct: 55  YLLPIINRIYLGEFEEGYIKAIVMAPTRELAQQIDQQITGFGYFVSISSLAIYGGTDGSA 114

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK-- 413
             +A      G   I++ T       +             ++   D     G    +   
Sbjct: 115 WAQAQRGAERGT-DIVVATPGRLISMLNLQAADISHTSYFVIDEADRMLDMGFYDDIMSI 173

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                    + L +AT  P+   L      D   +              I I++  E I 
Sbjct: 174 CRHLPKTCQIALFSATMPPKIEELARSILKDPVHVA-------------IAISKPPETIL 220

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSV----------VERFNSLHEHFTSSIAIIHG 523
           +   +  E +K   +   +    E                 +   +L      ++A +H 
Sbjct: 221 QSAYICYEAQKLPIVTDLLSSMSEEKPTKTVVFSSSKLKVHQLATALKSRGV-NVAEMHS 279

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +    +E VM  FK G  ++L+AT ++  GID+ D  ++I  +  H     +H++ GR 
Sbjct: 280 DLDQTTREQVMRDFKTGYVEVLVATDIVARGIDIDDIKVVINYDMPHDPEDYVHRI-GRT 338

Query: 584 GRGEEISSCIL 594
            RG +     +
Sbjct: 339 ARGTDGRGVAI 349


>gi|224048550|ref|XP_002190979.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53
           [Taeniopygia guttata]
          Length = 729

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 157/445 (35%), Gaps = 51/445 (11%)

Query: 204 EAFNIIHNPRKAKDFEWTSPARERLAYDELL-----AGQIALLLMRKQFKKEIGIPINVE 258
           E+      P   K+F   S     ++ +E+         I    +++  K+ I  P+   
Sbjct: 267 ESMKWAGLPPIEKNFYKESSRTASMSQEEVDLWRKENNGITCDDLKEGEKRCIPNPVCKF 326

Query: 259 GKIAQKI------LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
             + +        +R + F  PT  Q  A   ILQ +        I     G+GKTL  L
Sbjct: 327 EDVFEHYPDIMASIRKVGFQKPTPIQSQAWPIILQGID------LIGIAQTGTGKTLAYL 380

Query: 312 IAMAAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
           +     + +         G   +++AP   LA Q      KY       + +  G     
Sbjct: 381 MPGFIHLTSQPISKDQRGGPGMLVLAPTRELALQVEAECSKYAYKGIKSICVYGGG---- 436

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            R+  ++ +  G   I+I T     D      I    +  +++DE  R           K
Sbjct: 437 DRKGQIDMVTKG-VDIVIATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMK 495

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                 +L+   P  +T++ ++     + ++ +       I  V          +++  +
Sbjct: 496 ------ILIDVRPDRQTVMTSATWPDGVRRLAKSYLKNPMIVYVGTLDLAAVSTVQQKVI 549

Query: 478 VLSEGKKAYWICPQIEEKKESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
           V+ E KK  ++   I+  K  +        +   +   S        +  +HG     D+
Sbjct: 550 VIPEEKKRAFMHSFIKSMKPKDKVIIFVGKKLTADDLASDFGIQGIPVQSLHGNREQCDR 609

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E  +D FK G  ++L+AT +   G+DV D + +   +        +H++ GR GR     
Sbjct: 610 EQALDDFKKGKVRILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRV-GRTGRAGRSG 668

Query: 591 SCILLYHPPLSKNSYTRLSVLKNTE 615
             + L      + +   + +L+   
Sbjct: 669 EAVTLVTSNDWRFASELIDILERAN 693


>gi|149038677|gb|EDL92966.1| rCG22008, isoform CRA_c [Rattus norvegicus]
          Length = 638

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 143/423 (33%), Gaps = 72/423 (17%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------GQAV 325
             Q      +            I Q   G+GKT    I +   ++ G          Q +
Sbjct: 63  PIQAKTFHHVYSGKD------LIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVL 116

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  +     T+  ++ V    G  P   +   +ER+  G   I++GT   
Sbjct: 117 VLAPTRELANQVSKDFSDITK--KLSVACFYGGTPYGGQ---IERMRSG-IDILVGTPGR 170

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +D +Q  KL        +L  VD+    G   +++              +   P+TL+ 
Sbjct: 171 IKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKD----SEDNPQTLLF 226

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEK 495
           ++     +  + +K       +  +I        I  E L +     ++A  I   I   
Sbjct: 227 SATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVY 286

Query: 496 KESNFR-----SVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                R        +    L ++         +HG +    +E  +  F+NG   +L+AT
Sbjct: 287 SGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVAT 346

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +  +++         + +H+  GR GR      CI  Y            
Sbjct: 347 NVAARGLDIPEVDLVVQSCPPKDVESYIHR-SGRTGRAGRTGVCICFY------------ 393

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
                 ++ + +A+             ++Q    KF          +++ + KDA  +L 
Sbjct: 394 ----QHKEEYQLAQ-------------VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLD 436

Query: 669 QDP 671
             P
Sbjct: 437 SVP 439


>gi|254302223|ref|ZP_04969581.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322415|gb|EDK87665.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 529

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 125/342 (36%), Gaps = 34/342 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAP 329
           SPT  Q   I  +L     KN    I Q   G+GKT    + +    E     QA+++ P
Sbjct: 30  SPTPIQRLTIPALL-----KNDKDIIGQAQTGTGKTAAFSLPIIENFENLEHIQAIVLTP 84

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +   + + ++ V  + G      +RK ++        +++GT     D 
Sbjct: 85  TRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKT----GVDVVVGTPGRVIDL 140

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTLVLTS 439
           I+   L L  +        DE    G  + +   LT       +L  +AT     + +  
Sbjct: 141 IERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRMLFFSATMPDEIMKVAK 200

Query: 440 LGDIDISKITEKPAGRKPIKTVII--PINRIDEVIERLKVV-LSEGKKAYWICPQIEEKK 496
               +   +  K        T  I   +N  D+     +++ L++       C    +  
Sbjct: 201 THMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGIIFCRTKTDVN 260

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           E   R     +++           +HG +    +E  +  FK     +L+AT V   GID
Sbjct: 261 EIVGRLNDRGYDA---------EGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + D S +I         + +H++ GR GR  +  + I    P
Sbjct: 312 INDLSHVINYAIPQEVESYVHRI-GRTGRAGKEGTAITFITP 352


>gi|124265824|ref|YP_001019828.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
           PM1]
 gi|124258599|gb|ABM93593.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
           PM1]
          Length = 494

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/366 (18%), Positives = 125/366 (34%), Gaps = 42/366 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-----------G 322
           T  Q  AI  +L           +     G+GKT    + +   +               
Sbjct: 43  TPIQAKAIPLVLAGRDV------MGAAQTGTGKTAAFSLPLLQKMLKHESSSTSPARHPV 96

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+++AP   LA Q    +K Y+++TQ+   ++ G +    +   L+R       ++I T
Sbjct: 97  RALVLAPTRELADQVANNVKTYSKHTQLRATVVFGGIDMKPQTAELKR----GVEVLIAT 152

Query: 383 HALFQDSIQYYKLILVIV-----DEQHRFG-----VQQRLKLTQKATAPHVLLMTATPIP 432
                D I+     L  V     DE  R          +  L+    +   LL +AT  P
Sbjct: 153 PGRLLDHIEAKNCSLSQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRQTLLFSATFSP 212

Query: 433 RT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
               L  + L D  + +     A    ++     +   D+     +++ +       +  
Sbjct: 213 EIKKLANSYLQDPILVETARPNATASTVEQRFYRVEDDDKRNAVKQLLRTRAITQSIVFV 272

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                   N +    R     E        +HG  S  ++   + +FK G   LL+AT V
Sbjct: 273 --------NSKLGAARLARAFERDGLRTQALHGDKSQDERLKALAAFKAGEVDLLVATDV 324

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D   +   +        +H++ GR GR       I L     ++       +
Sbjct: 325 AARGLDIADLPAVFNFDVPFNAEDYVHRI-GRTGRAGASGLAITLVSRDDARLVSDIEKL 383

Query: 611 LKNTED 616
           +K   D
Sbjct: 384 IKKKLD 389


>gi|293192664|ref|ZP_06609618.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
 gi|292820171|gb|EFF79168.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
          Length = 722

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/351 (21%), Positives = 136/351 (38%), Gaps = 44/351 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           PT  Q +AI  +L+          +     G+GKT    + + A V+A     QA+++AP
Sbjct: 68  PTPIQAAAIPPLLE------LRDVVGIAQTGTGKTAAFGLPLLAIVDADERNVQALVLAP 121

Query: 330 IGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q  + I+ +   T  + V  + G  P   +  AL+R     A +++GT     D
Sbjct: 122 TRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGALKR----GAQVVVGTPGRVID 177

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVL--LMTATPIPRTLVLT 438
            I+   L L  V        DE  R G  + ++    +     L  L +AT       + 
Sbjct: 178 LIEKGALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTALFSATMPAAIEKVA 237

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D  K+         + T    ++ I +    +      G  +  +  + +  KE 
Sbjct: 238 REHLKDPVKVA--------VSTESSTVDTIHQTYAVVPYKHKIGALSRVLATRAQHIKEG 289

Query: 499 N-----------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        R+ VE  +          A I G ++  ++E +++  KNG+  +L+A
Sbjct: 290 QEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKNGSLDVLVA 349

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           T V   G+DV   S+++  +      A +H++ GR GR       +  + P
Sbjct: 350 TDVAARGLDVERISLVVNFDVPREPEAYVHRI-GRTGRAGREGRALTFFTP 399


>gi|291406389|ref|XP_002719529.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2
           [Oryctolagus cuniculus]
          Length = 544

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 128/333 (38%), Gaps = 37/333 (11%)

Query: 307 TLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           TL  L+     +          G   +++AP   LAQQ  +   +Y +  ++    I G 
Sbjct: 75  TLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGG 134

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQ 410
            P+  + + LER       I I T     D ++  K        L+L   D     G + 
Sbjct: 135 APKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEP 190

Query: 411 RLKLT--QKATAPHVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVI 462
           +++    Q       L+ +AT     R L    L D     I   E  A      I  V 
Sbjct: 191 QIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVC 250

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
             + + +++I  ++ ++SE +    +  + +       R   E    +      ++ I H
Sbjct: 251 HDVEKDEKLIRLMEEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-H 302

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR
Sbjct: 303 GDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GR 361

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
             R  +  +    + P   K     +SVL+   
Sbjct: 362 TARSTKTGTAYTFFTPNNIKQVSDLISVLREAN 394


>gi|261755014|ref|ZP_05998723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|261744767|gb|EEY32693.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
          Length = 517

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 142/393 (36%), Gaps = 40/393 (10%)

Query: 226 ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDIL 285
            R   D   A  +  + + K+        + + G + + +       P   Q  AI   L
Sbjct: 78  RRFKADRECAVPLKEIELTKENTGG-FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQL 136

Query: 286 QDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQH 337
           +          +     GSGKT    + +   +            +A+I+AP   LA Q 
Sbjct: 137 EGQD------ILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQI 190

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI------- 390
            + I+  +++  I   ++ G + +  + K +         ++I T     D +       
Sbjct: 191 EQTIRNVSKSAHISTALVLGGVSKLSQIKRIAP----GIDVLIATPGRLTDLMRDGLVDL 246

Query: 391 -QYYKLILVIVDEQHRFGVQQRLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDIDISK 447
            Q   L+L   D     G    +K   KAT       L +AT       L      D  +
Sbjct: 247 SQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVR 306

Query: 448 ITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505
           +   P G     I  V+ P+   ++      ++     ++  +  + +   ++  R    
Sbjct: 307 VEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGADAVVRH--- 363

Query: 506 RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII 565
                 E     +A IHG  S   ++  ++ F++GT ++L+AT +   GIDV   S ++ 
Sbjct: 364 -----LERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 418

Query: 566 ENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            +        +H++ GR GR     + I LY P
Sbjct: 419 YDLPDEPETYVHRI-GRTGRNGASGASITLYDP 450


>gi|258566652|ref|XP_002584070.1| ATP-dependent RNA helicase ded1 [Uncinocarpus reesii 1704]
 gi|237905516|gb|EEP79917.1| ATP-dependent RNA helicase ded1 [Uncinocarpus reesii 1704]
          Length = 670

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/375 (16%), Positives = 130/375 (34%), Gaps = 47/375 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGGQA------ 324
           +PT  Q+ +I  +   M  ++ M        GSGKT   L  +   A + G  A      
Sbjct: 202 TPTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQAFKNGPSAVPTQNA 255

Query: 325 ---------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                          +I+AP   L  Q Y+  +K+   + +   ++ G      + + +E
Sbjct: 256 NQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIE 315

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVL 424
           R       +++ T     D I+  ++ L  +     DE  R          Q        
Sbjct: 316 R----GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEP--QIRRIVEGE 369

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            M      +TL+ ++    DI  +  +   +  +   +  +    E I +    + +  K
Sbjct: 370 DMPPVNGRQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEYVEDNDK 428

Query: 485 AYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
              +   +              + + +  +    +       IHG  +  ++E  ++ F+
Sbjct: 429 RSVLLDILHTHGTGLTLIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYFR 488

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           N  C +L+AT V   G+D+ + + ++  +        +H++ GR GR          ++ 
Sbjct: 489 NARCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI-GRTGRAGNTGLSTAFFNR 547

Query: 599 PLSKNSYTRLSVLKN 613
                    + +LK 
Sbjct: 548 GNRGVVRDLIELLKE 562


>gi|194388512|dbj|BAG60224.1| unnamed protein product [Homo sapiens]
          Length = 544

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 128/333 (38%), Gaps = 37/333 (11%)

Query: 307 TLVALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           TL  L+     +          G   +++AP   LAQQ  +   +Y +  ++    I G 
Sbjct: 75  TLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGG 134

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQ 410
            P+  + + LER       I I T     D ++  K        L+L   D     G + 
Sbjct: 135 APKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEP 190

Query: 411 RLKLT--QKATAPHVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVI 462
           +++    Q       L+ +AT     R L    L D     I   E  A      I  V 
Sbjct: 191 QIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVC 250

Query: 463 IPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIH 522
             + + +++I  ++ ++SE +    +  + +       R   E    +      ++ I H
Sbjct: 251 HDVEKDEKLIRLMEEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-H 302

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G  S  +++ V++ FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR
Sbjct: 303 GDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GR 361

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
             R  +  +    + P   K     +SVL+   
Sbjct: 362 TARSTKTGTAYTFFTPNNIKQVSDLISVLREAN 394


>gi|85706796|ref|ZP_01037887.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. 217]
 gi|85668589|gb|EAQ23459.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. 217]
          Length = 662

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 132/369 (35%), Gaps = 44/369 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           + T  QE+     L           ++    GSGKT+   +A+A  +  G +        
Sbjct: 35  TLTPVQEAVTDPALSG------SDLLVSAQTGSGKTVGFGLAIAPTLLDGAERLPPAAAP 88

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+AP   LA Q    +          +    G M     R+ALER     AHI++GT
Sbjct: 89  LALIVAPTRELALQVMRELSWLYAEAGARLVSCVGGMDARDERRALER----GAHIVVGT 144

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I    L        +L   DE    G ++ L+           L  A    RT
Sbjct: 145 PGRLCDHINRGALDMTSLRAIVLDEADEMLDLGFREDLEFM---------LAAAPAERRT 195

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I+K+ EK        T +    +  + I    + +        +   +  
Sbjct: 196 LMFSATVPPMIAKLAEKFQRDAHRVTTLTGAKQHAD-ISYQALTVVPHDAEGAVINLLRY 254

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
               N       R++V R  +   +   ++  + G +S  ++   + + ++G  ++ +AT
Sbjct: 255 HDAQNAIVFANTRAMVARLTARLANRGFAVVSLSGELSQAERTHALQAMRDGRARVCVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+ +  +++           LH+  GR GR        L+     +  +   L
Sbjct: 315 DVAARGIDLPNLDLVVHAELPTNSEGLLHR-SGRTGRAGRKGISALIVAVKSANKAERLL 373

Query: 609 SVLKNTEDG 617
              K T + 
Sbjct: 374 KFAKITAEW 382


>gi|71022263|ref|XP_761361.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
 gi|74699927|sp|Q4P3U9|RRP3_USTMA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|46097669|gb|EAK82902.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
          Length = 551

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/334 (18%), Positives = 123/334 (36%), Gaps = 21/334 (6%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMAP 329
           PT  Q  AI + LQ          I     GSGKT    I +  A+    +   A ++AP
Sbjct: 127 PTPIQVKAIPEALQ------ARDVIGLAQTGSGKTAAFTIPILQALWDNPKPFFACVLAP 180

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + ++       +    I G M    +  AL +    + H+I+ T    QD 
Sbjct: 181 TRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSK----RPHVIVATPGRLQDH 236

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++  K   +   +        RL           LL +     RT++ ++     ++K+ 
Sbjct: 237 LENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRERRTMLFSATMTTKVAKL- 295

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES------NFRSV 503
           ++ + + P++  +         +++  + +    K  ++     E+              
Sbjct: 296 QRASLKNPVRVEVDTKYTTVSTLKQHYMFMPFAHKDTYLVHLANEQAGHSIIVFTRTVHD 355

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +R + L          +HG++S   +   ++ FK G   +L+AT V   G+D+    ++
Sbjct: 356 SQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVATDVASRGLDIPAVDLV 415

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +  +        +H++ GR  R       + L  
Sbjct: 416 VNYDIPTNSKDYIHRV-GRTARAGRSGRSVTLVT 448


>gi|251791029|ref|YP_003005750.1| ATP-dependent RNA helicase DeaD [Dickeya zeae Ech1591]
 gi|247539650|gb|ACT08271.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 624

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 149/411 (36%), Gaps = 44/411 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + +  P+  Q   I  +L           +     GSGKT    + +   ++A    
Sbjct: 21  LSEMGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLNNIKADLKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E   +++++   + V  + G      R     R       +++
Sbjct: 75  PQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGG----QRYDVQLRALRQGPQVVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTALFSATM 190

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + D    +I      R  I      +  + +    ++ + +E   A  I
Sbjct: 191 PEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFLEAEDFDAAII 250

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +LIAT
Sbjct: 251 FVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDILIAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 303 DVAARGLDVDRISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 609 SVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             +K T     I E DL   +   +  +         +   +  +++ +LL
Sbjct: 362 RTMKLT-----IPEVDLPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALL 407


>gi|217970097|ref|YP_002355331.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217507424|gb|ACK54435.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 677

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/361 (19%), Positives = 130/361 (36%), Gaps = 40/361 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q + I  +L           + +   G+GKT    + M A ++      Q +++ 
Sbjct: 38  TPSPIQAACIPQLLAGHD------ILGEAQTGTGKTAAFALPMLAKLDLADTRPQVLVLT 91

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E   KY  + +    + I G      + + L R     A +++GT     
Sbjct: 92  PTRELAIQVAEAFAKYAHHLKNFHVLPIYGGQSMVVQLRQLSR----GAQVVVGTPGRVM 147

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++   L        +L   DE  R G    ++   +           TP  R   L S
Sbjct: 148 DHLERESLKLDALKAIVLDEADEMLRMGFIDDVEWILEH----------TPAERQTALFS 197

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               ++ +   +   R P +  I         I +   ++    K   +   ++ ++  +
Sbjct: 198 ATMPNVIREVARRHLRNPQEIKIRAATSTVAKISQRYWLVRGVDKLDALTRILDAEESFD 257

Query: 500 -------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +   E           + A ++G M+   +E V++  KNG   ++IAT V  
Sbjct: 258 AALVFVRTKIATEELADKLAARGYAAAALNGDMNQGLRERVIEQLKNGALDIVIATDVAA 317

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GIDV   S +I  +  +   A +H++ GR GR       IL   P  ++         +
Sbjct: 318 RGIDVPRVSHVINYDIPYDTEAYVHRI-GRTGRAGREGVAILFVAPRETRMLKMIERATR 376

Query: 613 N 613
            
Sbjct: 377 Q 377


>gi|168704554|ref|ZP_02736831.1| ATP-dependent RNA helicase [Gemmata obscuriglobus UQM 2246]
          Length = 523

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/362 (20%), Positives = 134/362 (37%), Gaps = 28/362 (7%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA----VEAGGQAVIMA 328
           PT  QE+ I   L+          I Q   G+GKT   LI            G   V+M 
Sbjct: 109 PTPIQENVIPPALRGKDV------IGQAQTGTGKTAAFLIPFLNRWRPHTLKGPIGVVMT 162

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q     +K   + +     + G      +   L R       +++GT     D
Sbjct: 163 PTRELALQIANEAEKLAPSKRFRCVPVYGGTGMQRQLDGLTR----GCDLVVGTPGRMLD 218

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            +Q   + L  V          R+           +L       +TL++++     I ++
Sbjct: 219 HLQRGSMSLSQV-RYAVLDEADRMLDIGFRDDIERILKRCPSERQTLLMSATVPDSIKRL 277

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER-- 506
             +   R P+   ++P     + I +    + + +K   +   +E +K       VER  
Sbjct: 278 VNRYM-RDPVHLHMMPEKPTVDKIRQSYFTVDQDRKFELLKRVVEREKPRQCLIFVERKR 336

Query: 507 -FNSLHEHFTSSI---AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             ++L+     ++   A+IHG +    +E +M +F+    K LIAT V+  GIDV   S 
Sbjct: 337 WADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAFRTADIKYLIATDVMSRGIDVSGLSH 396

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVLKNTE-DG 617
           +I  +        +H++ GR GR  +    I    P     L+        +++    +G
Sbjct: 397 VINYDLPMDIENYVHRI-GRTGRIGKDGIAISFVLPEQGEHLTNIEMMINRLIEEDRVEG 455

Query: 618 FL 619
           F 
Sbjct: 456 FE 457


>gi|254694921|ref|ZP_05156749.1| ATP-dependent RNA helicase DeaD [Brucella abortus bv. 3 str. Tulya]
 gi|261215256|ref|ZP_05929537.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 3 str.
           Tulya]
 gi|260916863|gb|EEX83724.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 3 str.
           Tulya]
          Length = 534

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 148/365 (40%), Gaps = 46/365 (12%)

Query: 272 SPTKSQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGG 322
           + T  Q + +  + L           ++    GSGKT+   +AMA  +        +AG 
Sbjct: 22  TLTAVQNAVLAPETLAS-------DLLVSAQTGSGKTVAFGLAMANTILEDELRFGDAGA 74

Query: 323 Q-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LA Q    ++    +T   +    G M     R+ALER     +HI++G
Sbjct: 75  PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GSHIVVG 130

Query: 382 THALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D I        Q   ++L   DE    G ++ L+           L  A    R
Sbjct: 131 TPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFI---------LGEAPEDRR 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I+++ ++        TV    ++  + I+ + + +   ++ + I   + 
Sbjct: 182 TLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHAD-IDYVAMPVPPHERDHAIINTLL 240

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                N       R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +        LH+  GR GR     +C+L+      +++   
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGTCVLVVPFSRRRSAERL 359

Query: 608 LSVLK 612
           L + K
Sbjct: 360 LHMAK 364


>gi|224585078|ref|YP_002638877.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224469606|gb|ACN47436.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 626

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 164/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LTDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW--GMRKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 SAE---GEELDLETLAAALLKMA 432


>gi|170576579|ref|XP_001893687.1| RNA-dependent helicase [Brugia malayi]
 gi|158600176|gb|EDP37484.1| RNA-dependent helicase, putative [Brugia malayi]
          Length = 553

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/464 (17%), Positives = 159/464 (34%), Gaps = 69/464 (14%)

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI- 253
           +K  F S + +      P      +W+        +++    + + ++ R+Q + +    
Sbjct: 61  RKYDFGSRSASGGNSLRP-----IDWSRENLR--PFEKNFYREHSAVMRREQVEIDRWFT 113

Query: 254 --------------PINVEGKIAQKILRNIPF----SPTKSQESAIKDILQDMSQKNRML 295
                           + +     ++L ++ F     PT  Q  +    L        M+
Sbjct: 114 DNQVTVEGNDLPRPVFDFKEAGFPQVLTDMLFANFQKPTVIQSISWPIAL----SGRDMV 169

Query: 296 RILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYEFIKKYTQN 347
            I     GSGKT   ++              +     +++ P   LAQQ  E  K Y + 
Sbjct: 170 SI--AKTGSGKTFAFILPAIVHTINQPPRGHQKSPSVLVLLPTRELAQQVEEVAKDYCRA 227

Query: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVI 399
           T + +  + G  P+A + + LER       III T     D ++  K        L+L  
Sbjct: 228 TDLSITCLFGGAPKATQARDLER----GVDIIIATPGRLMDFLEIGKTDLRRCTYLVLDE 283

Query: 400 VDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGR 455
            D     G   Q R  ++Q       L+ +AT     R L +  L D     +       
Sbjct: 284 ADRMLDMGFEPQIRKVVSQIRPDRQTLMFSATWPKDVRKLAMDFLTDAAHLNVGSLELSA 343

Query: 456 KPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
               T I+ I    N+   ++  L  ++++      I            +   +      
Sbjct: 344 NHNITQIVEIIDESNKQQRLMAILSDIMNKEDCKTIIFV--------ETKRKADDLTRWM 395

Query: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF 571
                    IHG     +++  +  F++G   +L+AT V   G+DV D   +I  +  + 
Sbjct: 396 RRDGWPALCIHGDKGQSERDWALSEFRSGKTPILLATDVAARGLDVDDIKYVINFDYSNN 455

Query: 572 GLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
               +H++ GR GR ++       +    +  +   + VL+   
Sbjct: 456 SEDYVHRI-GRTGRRDKTGVAYTFFTYANAPKAKDLIKVLEEAN 498


>gi|254374244|ref|ZP_04989726.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
 gi|151571964|gb|EDN37618.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
          Length = 441

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 140/373 (37%), Gaps = 41/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
            PT  Q  AI  +L+          +     G+GKT    + +   +    +A       
Sbjct: 23  KPTPIQAQAIPIVLKG------NDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQANRIKT 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I+ Y  NT I   +I G +    +   L +       I+I T  
Sbjct: 77  LILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK----GVEILIATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L   ++DE  R      +   +K    H LL       +TL+ ++
Sbjct: 133 RLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKK---IHKLL---PKKLQTLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I  +  +     P       +N   + I +    L +  K   +   I+++    
Sbjct: 187 TFSSEIKNLANEFLN-NPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  ++   + +    +   S + IHG  S   +   +  FK+    +L+AT +   
Sbjct: 246 VLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     +I  +  +     +H++ GR GR  +    I L     S +    LS +++
Sbjct: 306 GIDIAQLPCVINLDLPNVAEDYVHRI-GRTGRAGQEGLAISLV----SADEVESLSNIEH 360

Query: 614 TEDGFLIAEEDLK 626
              G L+  E+L+
Sbjct: 361 LI-GHLLPREELE 372


>gi|158320253|ref|YP_001512760.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           oremlandii OhILAs]
 gi|158140452|gb|ABW18764.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
           OhILAs]
          Length = 529

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 132/348 (37%), Gaps = 36/348 (10%)

Query: 269 IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQA 324
           + +  PT  Q  AI  +            I Q   G+GKT    I M   +   +   Q 
Sbjct: 23  LGYEVPTPIQAQAIPRLYAGED------IIGQAQTGTGKTAAFGIPMLEKINPQQKTPQV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +I+AP   L+ Q  + I+K+++  +      I G  P   + KAL++      +I++GT 
Sbjct: 77  LILAPTRELSMQVADEIRKFSKYLSGAKSIAIYGGQPIDRQIKALKQ----GVNIVVGTP 132

Query: 384 ALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPR 433
               D I+   L L  +        D+    G    +   L +  +    ++ +AT    
Sbjct: 133 GRILDHIRRKTLRLDQIVGLVLDEADQMLDMGFSDDIEAILQETPSERQTVMFSATMPKE 192

Query: 434 T--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              +    + +    K+  K      I      +   +++    +++  E  +   I  +
Sbjct: 193 IEEIAKKYMKNPKKVKVVHKELTVPKISQYYFEVRPHEKLDALCRILDMENSELGIIFCR 252

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +       + V E   +L      S+  IHG +    ++ VM  F++GT  L+IAT V 
Sbjct: 253 TK-------KGVDELVENLQSRGY-SVEGIHGDLKQSQRDRVMKKFRDGTLDLMIATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             GIDV D  +++  +        +H++ GR GR         L    
Sbjct: 305 ARGIDVDDVDLVVNYDVPEDFEYYVHRI-GRTGRAGREGLAYTLVTGK 351


>gi|237841393|ref|XP_002369994.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211967658|gb|EEB02854.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
          Length = 1544

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/378 (18%), Positives = 137/378 (36%), Gaps = 43/378 (11%)

Query: 272  SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
             P   Q  AI  ++           I   + GSGKTL   + +   V +  Q        
Sbjct: 995  EPFPIQMQAIPCLMCGRDV------IAVAETGSGKTLAYGLPLIRHVLSVKQQDFRDGAI 1048

Query: 324  AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            A+++AP   L  Q ++ I +  +   +      G      +  A++R       +I+GT 
Sbjct: 1049 ALVIAPTRELCNQIFKEINRCCKLVDLNAVACYGGAGIGSQLGAIKR----GVEVIVGTP 1104

Query: 384  ALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
                D +           ++  +++DE  R                  ++ ++ P  +T 
Sbjct: 1105 GRLIDILTMNGGRLTSLKRVTFIVLDEADRMFDFGFEPQVTS------IIASSRPDRQTC 1158

Query: 436  VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
            + ++     I  +  +   +KP++ ++    R    +++   V+ E +K + +   + E 
Sbjct: 1159 LFSATFPPHIEALARR-ILQKPVEIIVGEKGRTAANVQQYVEVMEEERKFFRLLQLLGEW 1217

Query: 496  KES--------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +E               E F  L ++   + A +HG     D+E  +  F++G   LLIA
Sbjct: 1218 QEHGSVIIFVNRQVEADELFTELLKYGYQA-ATLHGGQDQTDREFTIQEFQDGVRTLLIA 1276

Query: 548  TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
            T+V   G+D     ++I     +     +H++ GR GR   I           +  +   
Sbjct: 1277 TSVAARGLDCKHCVLVINMTCPNHIEDYVHRI-GRTGRAGRIGVAYTFLTKEDADKADDL 1335

Query: 608  LSVLKNTEDGFLIAEEDL 625
               L  +      A  DL
Sbjct: 1336 EKALTQSGQAVPQALSDL 1353


>gi|325279879|ref|YP_004252421.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324311688|gb|ADY32241.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 374

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 129/346 (37%), Gaps = 37/346 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q+ AI   L       R   +     G+GKT    I +   ++A        G +A
Sbjct: 24  PTPIQQQAIPVALS------RKDILGCAQTGTGKTASFAIPIIQLLQADPIITKRKGVKA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E + +Y + T +   ++ G + Q  +   L++       I++ T  
Sbjct: 78  LILTPTRELALQISECLDEYARYTPVRHGVMFGGVNQRPQVTMLQK----GIDILVATPG 133

Query: 385 LFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D +    L L  V     DE  R      +   +       +L       +TL  ++
Sbjct: 134 RLLDLMSQGFLSLDQVKYFVLDEADRMLDMGFIHDIK------RILPKLPKEKQTLFFSA 187

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                I  +      + P+K  I P +   + IE+    + + +K   +   + + +   
Sbjct: 188 TMPDSIVTLAS-ALLKNPVKITITPESPTVDAIEQFVYFVEKAEKGRLLISLLRKAENQS 246

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   +R   +          IHG  S   ++S + +FK+G  ++++AT +   
Sbjct: 247 VLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GID+ +  ++I  +        +H++ GR GR     +        
Sbjct: 307 GIDINELPLVINYDLPDVPETYVHRI-GRTGRAGNAGTAFTFCSQE 351


>gi|310790707|gb|EFQ26240.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 733

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 135/391 (34%), Gaps = 65/391 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
            P+  Q +AI   LQ          I     GSGKT   L+ +   ++            
Sbjct: 312 DPSPIQRAAIPIALQ------ARDLIGVAVTGSGKTAAFLLPLLTYIQDLPPLTEINKND 365

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+I+AP   L QQ      K+       V  I G      +  AL R     A II+
Sbjct: 366 GAYALILAPTRELVQQIETEAHKFADPLGFNVVSIVGGHSLEEQVHALSR----GAEIIV 421

Query: 381 GTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLT----------------Q 416
            T     D I+   L+L           D     G ++ +                   +
Sbjct: 422 ATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEESVNKILDALPVSNEKPDTDDAE 481

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-------------II 463
            A      L       +T++ T+     + KI  K   R  I T+             + 
Sbjct: 482 NAQLMQKYLGATDRYRQTMMYTATMPPTVEKIARKYLRRPAIVTIGNAGEAVETVEQRVE 541

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
            ++  D+  +RL+ +L  G  A  I   +      N +   +      +    S   +HG
Sbjct: 542 FVSGEDKKKKRLQEILGAGDFAPPIIVFV------NIKRNCDAVARDVQRMGYSAVTLHG 595

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
             +   +E+ + S +NG  ++L+AT +   GIDV D S++I  N      +  H++ GR 
Sbjct: 596 SKTQEQREAALASVRNGQTQVLVATDLAGRGIDVPDVSLVINFNMATNIESYTHRI-GRT 654

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           GR  +    I       S   Y    +L  +
Sbjct: 655 GRAGKSGVAITFLEQSDSDLFYDLKQMLSKS 685


>gi|167585532|ref|ZP_02377920.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
          Length = 408

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 122/357 (34%), Gaps = 29/357 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----------EAG 321
           SPT  Q  AI  +L           +     G+GKT    + +   +          +  
Sbjct: 23  SPTPIQSQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHTFYAEHHHAKRA 76

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL R       I++ 
Sbjct: 77  VRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALRR----GVDIVVA 132

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +Q   + L  +D         R+           +L    P  + L+ ++  
Sbjct: 133 TPGRLLDHMQQKTIDLSQLD-ILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATF 191

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-- 499
             +I  + +      P    +   N   E + +    +   +K   +   I E       
Sbjct: 192 SDEIKALADSLLD-SPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVL 250

Query: 500 ----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +    R          S   IHG  S   +   +  FKN T ++L+AT +   GI
Sbjct: 251 VFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGI 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           D+     ++  +  +     +H++ GR GR       + L      +       ++K
Sbjct: 311 DIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGATGEAVSLVCVDEKQLLRDIERLIK 366


>gi|167644899|ref|YP_001682562.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167347329|gb|ABZ70064.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 479

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 126/361 (34%), Gaps = 29/361 (8%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q  AI  ++        +L I Q   G+GKT    + +   +          G + 
Sbjct: 25  PTPIQAQAIPLVM----SGRDLLGIAQ--TGTGKTAAFALPILHRLAEDKKPAPRRGFRC 78

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q  E  + Y ++  + V  I G +    + KAL         +++ T  
Sbjct: 79  LVLSPTRELATQIAESFRDYGKHMGLTVATIFGGVKYGPQMKALAA----GVDVVVATPG 134

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT-LVLTSLGDI 443
              D +      L  V+        Q L L        +   +  P  R  L  ++    
Sbjct: 135 RLMDHLGEKSAHLNGVEIFVLDEADQMLDLGFVVPIRKI--ASQLPKERQNLFFSATMPS 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------ 497
           +I K+      + P +  I P     E I++  + +   +K   +   + +K        
Sbjct: 193 EIGKLAG-ELLKNPAQVAITPSATTVERIDQSLIFIEAQRKRPLLAELLADKSVERSIVF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   +R            A IHG  +   +E  + +FK G  K LIAT +   GIDV
Sbjct: 252 TRTKRGADRVAKYLVASGIEAAAIHGDKTQGQRERALAAFKAGQVKALIATDIAARGIDV 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
            D S +      +   + +H++ GR  R  +    I                  + T   
Sbjct: 312 NDVSHVFNYELPNVPESYVHRI-GRTARKGKEGIAISFCADDERNLLKDIQKATRQTIPT 370

Query: 618 F 618
           F
Sbjct: 371 F 371


>gi|152995916|ref|YP_001340751.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836840|gb|ABR70816.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 398

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/395 (20%), Positives = 147/395 (37%), Gaps = 41/395 (10%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                + +   + Q I      +PT  Q+ AI  IL           I     G+GKT  
Sbjct: 1   MPFAKLGLSSPLVQAITELGYKTPTPVQKQAIPIILSGKD------LIATAQTGTGKTAA 54

Query: 310 ALIAMAAAVEAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
            ++ +       G       + +I+ P   LA Q    + +Y ++T++    + G +   
Sbjct: 55  FVLPLLERFTKAGTLRGKRIRVLILVPTRELAVQVEASVAQYAKHTKLTSMAVYGGVDTE 114

Query: 363 HRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +++ L         I++ T     D     ++ + +L ++++DE  R      +    K
Sbjct: 115 AQKERLIE----GVDILVATPGRLLDLAHQRALHFDELKVMVLDEADRMVDMGFVGDINK 170

Query: 418 -----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
                      LL +AT       L    D   SK+T+  A     +  I P  R    I
Sbjct: 171 IMERLPENRQNLLFSATMTDDVRALAF--DFSDSKMTDLAA-----EISISPNVRAAANI 223

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER---FNSLHEHFTSS---IAIIHGRMS 526
           ++  + + +  K+  +   I E+K       +E+      L +           IHG  S
Sbjct: 224 KQWLITVDKDTKSALLSHLINEQKWDQALIFIEKKHGAAKLVDQLAKRGIVADCIHGDRS 283

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              +E ++  FK+G  K L+AT V   G+D+ + S ++  +        +H++ GR GR 
Sbjct: 284 QAMREKILAQFKSGELKYLVATGVAARGLDIGELSRVVNYDLPFKPEEYIHRI-GRTGRA 342

Query: 587 EEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA 621
             +   I        KN     S LK+  D   IA
Sbjct: 343 GALGEAISFVAMGDFKNLCAIESRLKHIIDRKEIA 377


>gi|118602908|ref|YP_904123.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567847|gb|ABL02652.1| ATP-dependent RNA helicase CsdA [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 606

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 134/371 (36%), Gaps = 45/371 (12%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG-- 321
           +L  I +  P+  QE  I  +L           I Q   G+GKT    + +   ++ G  
Sbjct: 26  VLDAIGYETPSPIQEQCITHLLNGED------IIGQAQTGTGKTAAFSLPLLDKIDLGIN 79

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
             Q +I+ P   LA Q  E ++ Y +      V  I G      + + L+R      H I
Sbjct: 80  MPQLLILTPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRPLKR----GVHAI 135

Query: 380 IGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
           +GT     D I+   L L  +        DE  + G    +K   +              
Sbjct: 136 VGTPGRVMDHIKKGTLKLDHLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQ--------- 186

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            +  + ++     I K+ E+   +  I  +         + ++  +V    +K   +  +
Sbjct: 187 RQIALFSATMPSVIKKVAEQFLNQPKIVKIKTKTETATTITQKYCMVGGLSQKLEAL-TR 245

Query: 492 IEEKKESNFRSVVERFNSLHEHFTS-------SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           I E    +   +  R  +L             S   I+G +    +E ++ ++K G   +
Sbjct: 246 ILEVTTFDAMIIFVRTKTLTTELAEKLSARGFSAEAINGDIQQNQRERIITNYKKGKIDI 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S ++  +      + +H++ GR GR       IL      S   
Sbjct: 306 LIATDVAARGLDVERISHVVNYDIPQDAESYVHRI-GRTGRAGRKGDAILFV----SNRE 360

Query: 605 YTRLSVLKNTE 615
              L+ +++  
Sbjct: 361 RRMLNTIEHIT 371


>gi|115352406|ref|YP_774245.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115282394|gb|ABI87911.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 497

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 126/364 (34%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAQAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPQASTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P    L  T L +    ++    +    +  ++  +   D+    ++++   G K   +
Sbjct: 203 SPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHGAVVQLLRDRGLKQVLV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      + IHG  S +++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGATGDALSLCSPNERKQLADIE 373

Query: 609 SVLK 612
            ++K
Sbjct: 374 KLIK 377


>gi|328779178|ref|XP_623193.3| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Apis
           mellifera]
          Length = 588

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 155/429 (36%), Gaps = 47/429 (10%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI--- 269
              KDF    P     + +E+   +    +  K       I    EG     +L  I   
Sbjct: 72  PLRKDFYIEHPTVRSRSKEEVCQFRENAEITIKGDNIPNPIQYFEEGNFPPYVLEEIHKQ 131

Query: 270 PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EA 320
            +S PT  Q       L        ++ I Q   GSGKTL  ++     +          
Sbjct: 132 GYSQPTAIQAQGWPIAL----SGRDLVAIAQ--TGSGKTLGYVLPAIVHIIHQPRLSNGD 185

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+I+AP   LAQQ  E    + +   +    I G  P+  +   LER       I I
Sbjct: 186 GPIALILAPTRELAQQIQEVANCFGEAAGVRNTCIFGGAPKGPQAHDLER----GVEICI 241

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D ++           L+L   D     G   Q R  + Q      VL+ +AT 
Sbjct: 242 ATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATW 301

Query: 431 IP--RTLVLTSLGDIDISKI--TEKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKK 484
               R L    L D     I      A    I+ V +     +  ++   L+ + +E + 
Sbjct: 302 PKEVRALAEDFLSDYMHLNIGSLTLSANHNIIQIVDVCQEFEKDLKLYRLLQEIGNEKEN 361

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              I  + + K +   R+       +      +++I HG  +  +++ V+  FK+G   +
Sbjct: 362 KTIIFVETKRKVDDITRN-------IRRDGWQALSI-HGDKNQQERDHVLQEFKSGRAPI 413

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT V   G+DV D   +I  +        +H++ GR GR  +  +    +     K++
Sbjct: 414 LVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRI-GRTGRRRQTGTAYAFFTSHNMKHA 472

Query: 605 YTRLSVLKN 613
              + VL+ 
Sbjct: 473 GDLIEVLRE 481


>gi|323448840|gb|EGB04734.1| hypothetical protein AURANDRAFT_70371 [Aureococcus anophagefferens]
          Length = 383

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 136/368 (36%), Gaps = 47/368 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAP 329
           P+  Q+ AI  I+           I Q   G+GKT V  IAM   +E      Q + ++P
Sbjct: 47  PSAIQQRAITPIVAGRDV------IAQSQSGTGKTAVFCIAMLQVLESATNETQMLTISP 100

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  +          +      G        + L+        I+ GT     D 
Sbjct: 101 TRELAEQTQKVCLALGDYMNVQCHACIGGKSIGEDIRRLDY----GVQIVSGTPGRVFDM 156

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           I+   L        ++   DE    G ++++    +            P  + +++++  
Sbjct: 157 IKRRNLRTRNLKMLVIDEADEMLNRGFKEQIYDIYRYLP---------PSTQVVLISATM 207

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFR 501
             ++  +T K    +P++ ++    + DE+         EG K +++  + EE K     
Sbjct: 208 PQEVLDMTRKFMN-EPVRVLV----KRDELT-------LEGIKQFFVAVEREEWKFDTLC 255

Query: 502 SVVERF----NSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            + +        +  +    ++ +HG M   +++++M  F+ G  ++LIAT +   G+DV
Sbjct: 256 DLYDTLTITQAVIFCNTKRKVSAMHGDMPQRERDAIMAEFRGGASRVLIATDIWGRGLDV 315

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              S++I  +  +     +H++ GR GR       I        +             D 
Sbjct: 316 QQVSLVICYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKNDDVRILRDIEQYYSTQIDE 374

Query: 618 FLIAEEDL 625
             +   DL
Sbjct: 375 MPMNVADL 382


>gi|304414099|ref|ZP_07395467.1| DEAD-box RNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283313|gb|EFL91709.1| DEAD-box RNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 635

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 141/366 (38%), Gaps = 36/366 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L N+ +  P+  Q   I  +L           +     GSGKT    + +   ++A    
Sbjct: 29  LTNLGYKKPSPIQLECIPHLLNG------CDVLGMAQTGSGKTAAFGLPLLHNIKAEIKS 82

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E + ++++    + V  + G      + +AL +       +++
Sbjct: 83  PQILVLAPTRELAVQVAEALTEFSKYIKGVNVVALYGGQRYDLQLRALRQ----GPQVVV 138

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 139 GTPGRLLDHLKRGTLNPSKLSGLVLDEADEMLRMGFIEDVENIMKQIPAVHQTALFSATM 198

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + +    +I      R  I      ++ + +    ++ + SE   A  I
Sbjct: 199 PEAIRRITRRFMKEPQEIRIQSSVTTRPDISQSYWMVDGMRKNEALVRFLESEDFDAAII 258

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L  +  +S A+ +G M+   +ES ++  K+G   +LIAT
Sbjct: 259 FVRTKN-------ATLEVAEALELNGYNSAAL-NGDMNQALRESTLERLKDGRLNILIAT 310

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 311 DVAARGLDVDRISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVEHRERRLLKNIE 369

Query: 609 SVLKNT 614
             +K T
Sbjct: 370 RTMKLT 375


>gi|297744770|emb|CBI38032.3| unnamed protein product [Vitis vinifera]
          Length = 797

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 166/480 (34%), Gaps = 49/480 (10%)

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +++   QK+    + + F++  +    +        R+   + E          + +  +
Sbjct: 247 MDRPQRQKEQAAELYDTFDMRVDRHWTEKKLEEMTERDWRIFREDFNISYKGSKIPRPMR 306

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
             +   ++   ++ + + R    +P+  Q +AI   LQ      +   I   + GSGKT 
Sbjct: 307 SWVESKLS--TELLKAVERAGYKTPSPIQMAAIPLGLQ------QRDVIGIAETGSGKTA 358

Query: 309 VALIAMAAAV-----------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
             ++ M   +             G  AV+MAP   LAQQ  +   K+     I V  I G
Sbjct: 359 AFVLPMLTYISRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVG 418

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ 409
                 +   + +       ++I T     D ++           ++L   D     G +
Sbjct: 419 GQSIEEQGFRIRQGCE----VVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFE 474

Query: 410 QRLKLTQKATAPHVL--------LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            ++     A     L        L        T + ++     + ++  K   R P+   
Sbjct: 475 PQVVGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYL-RNPVVVT 533

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFT 515
           I    +  ++I +  +++ E +K + +   ++E  +       N +   +      +   
Sbjct: 534 IGTAGKATDLITQHVIMMKESEKMFKLQKLLDELGDKTAIVFINTKKSADNLAKGLDKAG 593

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +  +HG  S   +E  ++ F+     +L+AT V   GID+ D + +I  +        
Sbjct: 594 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMY 653

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF--LIAEEDLKQRKEGEI 633
            H++ GR GR  +            S   Y    +L          +A  +  + K G I
Sbjct: 654 THRI-GRTGRAGKTGVATTFLTLHDSDVFYDLKQMLIQNNSPVPPELARHEASKFKPGAI 712


>gi|159045255|ref|YP_001534049.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12]
 gi|157913015|gb|ABV94448.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12]
          Length = 434

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 129/357 (36%), Gaps = 27/357 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q  AI   L           +     G+GKT    + +  A+   G        +
Sbjct: 19  DPTPIQTRAIPHGLNGRDV------LGIAQTGTGKTAAFGLPLLDALMKAGTKPAPRTCR 72

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   L  Q  E ++ +T+ + + +++I G +    + K  ER     A +I+ T 
Sbjct: 73  GLILAPTRELVSQICESLRAFTEGSHLKLQVIVGGVAIGPQIKRAER----GADLIVATP 128

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    L L            Q L L        +  +      +T++ ++    
Sbjct: 129 GRLIDLLDRKALRLSETRFLVLDEADQMLDLGFIHALRKIAPLLPA-ERQTMLFSATMPK 187

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----- 498
            + +++ +     P +  + P  +I + I +    + +G K   +   +   ++      
Sbjct: 188 QMEELS-RAYLTDPARVEVAPPGKIADKITQSVHFVEQGAKTQLLIDLLGNHRDELALVF 246

Query: 499 -NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   +R      +     A IHG  S   +E  + +F+ GT K+L+AT V   GID+
Sbjct: 247 SRTKHGADRLARKLSNAGFETAAIHGNRSQGQRERALKAFREGTLKVLVATDVAARGIDI 306

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
            D   +   +  +     +H++ GR  R       +    P           V+  T
Sbjct: 307 PDVRFVYNFDLPNVPENFVHRI-GRTARAGRDGQAVAFCAPEEMGELRAVQKVMGLT 362


>gi|67527053|gb|AAY68322.1| putative cold-shock dead-box protein A [uncultured marine bacterium
           66A03]
          Length = 659

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 46/348 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           + T  QE+ +K  ++D +       ++    GSGKTL   I++A  + A           
Sbjct: 22  TLTPVQEAVLK--IEDSNS----DLLVSAQTGSGKTLAFGISIATTLLAEKMEFDRPKIP 75

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+AP   LA Q  + ++     T+       G M     R+ LE      AHI++GT
Sbjct: 76  LAIIIAPTRELALQVRKELEWLYVRTKAQFASCVGGMDPRAERRTLES----GAHIVVGT 131

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP 432
               +D I+   L L  +        DE    G ++ L     +       LL +AT   
Sbjct: 132 PGRLRDHIERGVLRLSDIKAVVLDEADEMLDMGFREDLTFILGKAPVERRTLLFSATVPT 191

Query: 433 RTLVLTSLGDIDISKIT-----EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           + + L      D  +I+      +          I P +R   VI  L+     G   + 
Sbjct: 192 QIVKLAKTYQKDSVRISVSSKKSQHLDISYHAIKIQPSDRDKAVINLLRYHDVSGAIVF- 250

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                      N R+ V    S   +   S+  + G +S  ++   + S + G   + +A
Sbjct: 251 ----------CNTRAAVTHLASRLTNRGFSVVALSGELSQKERNFALQSMRAGKANVCVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           T V   GID+ +  ++I  +      A LH+  GR GR       ++L
Sbjct: 301 TDVAARGIDLPNLELVIHADLPQSNEAMLHR-SGRTGRAGRKGVSVVL 347


>gi|119899811|ref|YP_935024.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119672224|emb|CAL96138.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 537

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 133/370 (35%), Gaps = 33/370 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---------GG 322
           +PT  Q  AI  +L           +     G+GKT    + +   + A           
Sbjct: 27  TPTPIQAKAIPLVLAG------GDLLAAAQTGTGKTAGFTLPVLHKLAATHVHPHPAGKP 80

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           + +I+ P   LA Q  E ++ Y ++  +   ++ G +    +  AL++    +  I++ T
Sbjct: 81  RCLILTPTRELAAQVEESVQTYGKHLALTSMVMFGGVNINPQISALKK----RVDILVAT 136

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D +    L L  V+        + L +        VL +   P  R  +L S   
Sbjct: 137 PGRLLDHVGQKTLDLSGVEILVLDEADRMLDMGFIRDIRKVLALL--PKQRQNLLFSATF 194

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
            D  +         P    + P N   E +E+   ++ + +K   +   I+EK+      
Sbjct: 195 SDEIRDLANGLLHNPGCVEVAPRNTASERVEQTVYMIGQKQKRELLAWLIKEKQWFQALV 254

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +    +            A IHG  S   +   +  FK+G+  +L+AT +   G+D
Sbjct: 255 FTRTKHGANKLAEYLTKHDIPAAAIHGNKSQSARTRALSQFKDGSLPVLVATDIAARGLD 314

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----LSKNSYTRLSVL- 611
           +     ++     +     +H++ GR GR     + I L        L+         + 
Sbjct: 315 IDQLPQVVNFELPNVPEDYVHRI-GRTGRAGADGNAISLVDGEEVKLLTAIERLIRRKID 373

Query: 612 KNTEDGFLIA 621
           + T +GF+ +
Sbjct: 374 RATAEGFVPS 383


>gi|163789144|ref|ZP_02183587.1| putative RNA helicase dead-box protein [Flavobacteriales bacterium
           ALC-1]
 gi|159875557|gb|EDP69618.1| putative RNA helicase dead-box protein [Flavobacteriales bacterium
           ALC-1]
          Length = 638

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/365 (19%), Positives = 133/365 (36%), Gaps = 35/365 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           + ++ F  P++ QE AI  +L+          +     G+GKT      M   ++     
Sbjct: 17  ITDLGFEKPSEVQEKAIPLLLE-----EDKDLVALAQTGTGKTAAFGFPMLQKIDIDSRT 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +I++P   L  Q    +K+Y +    + V  I G      + ++++R     A II+
Sbjct: 72  TQGLILSPTRELCLQITNELKQYGKYCKGLNVTAIYGGASITDQARSVKR----GAQIIV 127

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATP 430
            T    +D I    +        +L   DE    G  + +      T       L +AT 
Sbjct: 128 ATPGRMKDMISRKLVDISKIQYSVLDEADEMLNMGFYEDITDILSHTPDDKSTWLFSATM 187

Query: 431 IPR--TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
                T+    + D     +  +      +      +N  D   + LK +       + +
Sbjct: 188 PKEVSTIAKKFMYDPTEITVGNRNESTNNVSHEYYLVNARDR-YQALKRLSDANPDIFSV 246

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       R   +   +L E    S   +HG +S   ++ VM SF+N   ++L+AT
Sbjct: 247 I------FCRTKRDTQKVAENLIEDGY-SAGALHGDLSQNQRDIVMKSFRNKQIQMLVAT 299

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV D + +I            H+  GR GR  +    +++     ++   +  
Sbjct: 300 DVAARGIDVDDITHVINYQLPDEIETYTHR-SGRTGRAGKSGISMVIVSKSETRKIKSIE 358

Query: 609 SVLKN 613
            ++K 
Sbjct: 359 RIIKK 363


>gi|115453811|ref|NP_001050506.1| Os03g0566800 [Oryza sativa Japonica Group]
 gi|122246919|sp|Q10I26|RH34_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 34
 gi|13957631|gb|AAK50586.1|AC084404_11 putative translation initiation factor [Oryza sativa Japonica
           Group]
 gi|108709369|gb|ABF97164.1| Eukaryotic initiation factor 4A-3, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113548977|dbj|BAF12420.1| Os03g0566800 [Oryza sativa Japonica Group]
          Length = 404

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 131/369 (35%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+ A+  I+           I Q   G+GKT +  +++   V+      QA+I++
Sbjct: 53  KPSAIQQRAVLPIISGRDV------IAQAQSGTGKTSMISLSVCQIVDTAVREVQALILS 106

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        I V    G        + LE       H++ GT     D
Sbjct: 107 PTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDIRKLEH----GVHVVSGTPGRVCD 162

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        IL   DE    G + ++            V L++AT     L +T
Sbjct: 163 MIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMT 222

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + + + +   + L          Y      +   
Sbjct: 223 SKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTL-------CDLYDTLTITQAVI 275

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   +++++M  F++G  ++LI T V   G+D
Sbjct: 276 FCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLD 335

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S++I  +  +     +H++ GR GR       I        +             D
Sbjct: 336 VQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQID 394

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 395 EMPMNVADL 403


>gi|73996626|ref|XP_863183.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 10 [Canis familiaris]
          Length = 812

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/405 (20%), Positives = 143/405 (35%), Gaps = 52/405 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIM 327
            PT  Q  AI   LQ+         I   + GSGKT   LI +   +    + G  A+I+
Sbjct: 413 EPTPIQRQAIPIGLQNRD------IIGVAETGSGKTAAFLIPLLLTLIEESDQGPYAIIL 466

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LAQQ  E   K+ +   I    + G + +  +   L         I+I T     
Sbjct: 467 APTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCE----IVIATPGRLI 522

Query: 388 DSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATP------------ 430
           D ++   L+L      ++DE  R          Q     H+ +    P            
Sbjct: 523 DVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQ-KILEHMPVSNQKPDTDEAEDPEKML 581

Query: 431 ---------IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
                      +T++ T+     + ++      R+P    I    +  E +E+   ++SE
Sbjct: 582 ANFESGKHKYRQTVMFTATMPPAVERLARSYL-RRPAVVYIGSAGKPHERVEQKVFLMSE 640

Query: 482 GKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            +K   +   +E+  +       N +   +      E    +   +HG      +E  + 
Sbjct: 641 SEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 700

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           + K G   +L+AT V   GID+ D S+++  +        +H++ GR GR  +    I  
Sbjct: 701 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRI-GRTGRAGKSGVAITF 759

Query: 596 YHPPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEILGIK 637
                S   Y     +     +     +A     Q K G IL  K
Sbjct: 760 LTKEDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTKK 804


>gi|84394092|ref|ZP_00992827.1| Superfamily II DNA and RNA helicase [Vibrio splendidus 12B01]
 gi|86146725|ref|ZP_01065046.1| Superfamily II DNA and RNA helicase [Vibrio sp. MED222]
 gi|84375283|gb|EAP92195.1| Superfamily II DNA and RNA helicase [Vibrio splendidus 12B01]
 gi|85835572|gb|EAQ53709.1| Superfamily II DNA and RNA helicase [Vibrio sp. MED222]
          Length = 428

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 135/362 (37%), Gaps = 39/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
             T  Q+ AI      M++K   +       G+GKT    + +   +   G        +
Sbjct: 23  KLTPIQQKAIP-----MARKGHDIF-ATAQTGTGKTAAFSLPVIQHLLNSGKKASRGTAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA Q  + IK Y + T++ V  + G    + + + LE        I++ T 
Sbjct: 77  GLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQLEL----GVDILVATP 132

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
              ++ ++           L+    D     G     R  +    T+P +++ +AT   +
Sbjct: 133 GRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSPQIMMFSATTSTQ 192

Query: 434 --TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L +  L       +  + +    +  V+ P+++  +     +++  +  +   +   
Sbjct: 193 LNQLSVDILRKPKRISVERENSTASTVGHVVYPVDQERKTELLSELIGRKNWRQVLVFVN 252

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +E       +  +    L      ++ + HG  +   +   +D FK G  ++++AT V 
Sbjct: 253 YKE-------TANDVVKELKLDGIKAV-LCHGDKAQSARRRALDDFKEGRARVMVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D   +I  +        +H++ GR GR  +    I   +           +++
Sbjct: 305 ARGLDIEDLPHVINYDMPFLAEDYVHRI-GRTGRAGKQGHAISFVNREEELTVVQVETLI 363

Query: 612 KN 613
           + 
Sbjct: 364 QQ 365


>gi|319778451|ref|YP_004129364.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
 gi|317108475|gb|ADU91221.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
          Length = 442

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/351 (18%), Positives = 127/351 (36%), Gaps = 42/351 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----------EAGG 322
           T  Q  + + IL+          +     G+GKT    + +   +           +   
Sbjct: 28  TPIQALSFEPILEGRD------IMGAAQTGTGKTAAFTLPILNRLIPKANYSTSPAKHPV 81

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           + +++ P   LA+Q  + +  Y+    +   +I G +    +++ L R     A I+I T
Sbjct: 82  RMLVLTPTRELAEQISKNVNLYSDGLPLKCSLIYGGVDINSQKQELMR----GADIVIAT 137

Query: 383 HALFQDSIQYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP 432
                D I+           L+L   D     G    L   L+    +   LL +AT   
Sbjct: 138 PGRLLDHIEQRTVNLTQVEFLVLDEADRMLDMGFMPDLLRILSNLPKSRQSLLYSATFSE 197

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             R+L    L +     +    +    IK  +  ++  D+    + ++ S       I  
Sbjct: 198 NIRSLAQKFLNNPVEITVASNNSTASTIKQEVYSVSESDKNAALVYILTSRAFNNVIIF- 256

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  SN +   +    L  ++  ++  +HG  S +++   +D FK+  C +L+AT V
Sbjct: 257 -------SNRKVTCKNLERLLNNYDLAVQSLHGDKSQLERTKALDLFKSSKCNILVATDV 309

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
              G+D+ D   +I           +H++ GR GR  +    I L      
Sbjct: 310 AARGLDISDVDAVINYELPPTSEDYVHRI-GRTGRAGKKGIAISLCSSEEG 359


>gi|237730773|ref|ZP_04561254.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
 gi|226906312|gb|EEH92230.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
          Length = 448

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 130/362 (35%), Gaps = 38/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+ AI  +L+          +     G+GKT    + +   +             
Sbjct: 23  EPTPIQQQAIPAVLEGRD------LMASAQTGTGKTAGFTLPLLQHLITNQPHGKSRRPV 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E ++ Y++   I   ++ G +    +   L     G   ++I T
Sbjct: 77  RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLR----GGVDVLIAT 132

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D     +++  ++ ++++DE  R      +           +L       + L+ 
Sbjct: 133 PGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDI------RRVLAKLPTKRQNLLF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    DI  + EK     P++  +   N   E + +    + + +K   +   I +   
Sbjct: 187 SATFSDDIKSLAEK-LLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNW 245

Query: 498 SN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F       N L E         A IHG  S   +   +  FK+G  ++L+AT + 
Sbjct: 246 QQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ +   ++     +     +H++ GR GR       + L      K       +L
Sbjct: 306 ARGLDIEELPHVVNYELPNVPEDYVHRI-GRTGRAAATGEALSLVCVDEHKLLRDIEKLL 364

Query: 612 KN 613
           K 
Sbjct: 365 KK 366


>gi|33603341|ref|NP_890901.1| ATP-dependent RNA helicase DbpA [Bordetella bronchiseptica RB50]
 gi|33577465|emb|CAE34730.1| probable ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 462

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/460 (17%), Positives = 171/460 (37%), Gaps = 66/460 (14%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---G 322
           + + F   T  Q  ++  IL+          I Q   GSGKT    + +   ++      
Sbjct: 20  QGLGFEQMTPIQAQSLPLILEGRD------LIAQAKTGSGKTAAFGLGVLQNLDVNRLAP 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+++ P   LA Q  + +++  +    + V  + G      + ++L R      H+++G
Sbjct: 74  QALVLCPTRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLAR----GTHLVVG 129

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    QD +    L        +L   D     G    +                    +
Sbjct: 130 TPGRIQDHLARGSLDLSTLNTLVLDEADRMVDMGFYDDIAAIASHCPAR---------RQ 180

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++    +I K++ +         V          IE+L   + EG++   +   + 
Sbjct: 181 TLLFSATYPDNIRKLSARFLRNPAEIKV--EAQHDASRIEQLFFEIDEGQRLDAVAALLA 238

Query: 494 EKKESNFRSVVE---RFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             + ++  +      R + L E   +   S   ++G +   +++ ++  F N +C +L+A
Sbjct: 239 HFRPASTLAFCNTKIRSHDLVERLRAQGISAQALNGDLEQRERDEILIQFANQSCAVLVA 298

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS--- 604
           T V   G+D+ +   +I  +        +H++ GR GRG++    + L  P   + +   
Sbjct: 299 TDVAARGLDIQNLGAVINVDVTKDTEVHVHRI-GRSGRGDQKGLALSLCSPEEMRWANLI 357

Query: 605 ---------YTRLSVLKNTEDGFLIA-EEDLKQRK-------EGEILG--IKQSGMPKFL 645
                    +  L  L+   D  L A    L  +         G++LG      G+    
Sbjct: 358 EQYQGAPLKWADLGSLRPKSDRPLRAPMITLCIQGGKKDKLRPGDLLGALTGDGGLAFEQ 417

Query: 646 IA--QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           +        ++ + + R+ AK    +  + ++++G+  R+
Sbjct: 418 VGKINITEFNAYVALDRQVAKQAFARLSN-SNIKGRRFRM 456


>gi|113969505|ref|YP_733298.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113884189|gb|ABI38241.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 409

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/356 (19%), Positives = 126/356 (35%), Gaps = 41/356 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
           L  + +  PT  Q  AI  IL       +   +     G+GKT    + +   +    Q 
Sbjct: 16  LAELGYQQPTPIQIEAIPAILA------KQDVMAGAQTGTGKTAAFALPVLQQLLLDNQS 69

Query: 324 --------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                   A+++ P   LA Q  +   KY + T I + I  G +      +A +      
Sbjct: 70  QDAPKDIRALVLVPTRELAVQVQQSFGKYAKGTDIRIGIAYGGVS----IEAQQAEFKAG 125

Query: 376 AHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLL 425
             ++I T     D ++   L L  +        D     G    +K  L Q       LL
Sbjct: 126 IDVLIATPGRLLDHLRQGALNLKHLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQRQTLL 185

Query: 426 MTATPIPRTLVLT--SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT        +   L +  + ++ ++      ++  +  I+   +      +V S+  
Sbjct: 186 FSATLDDSIFGFSKNLLREPKLIEVAKRNTTAAQVEQRVYAIDSDRKTEFVSHLVRSKNW 245

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +   I  +         +  V++  +       +    HG +S   +E V+  FK G  +
Sbjct: 246 QQVLIFSRT--------KQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQ 297

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +L+AT V   G+D+ D   +I           +H++ GR GR       I L+   
Sbjct: 298 VLVATDVAARGLDIADLQYVINFELPFIAEDYIHRI-GRTGRAGSTGLAITLFSQE 352


>gi|289665687|ref|ZP_06487268.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 458

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/460 (18%), Positives = 165/460 (35%), Gaps = 63/460 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + ++  T  Q  ++  ILQ +        I Q   GSGKT    + +   ++     
Sbjct: 17  IDALGYTVLTPIQAQSLPPILQGLDV------IAQAPTGSGKTAAFGLGLLQQLDPALTR 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + ++K       + + ++TG MP   +  +LE        +++
Sbjct: 71  AQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEA---HDPQVVV 127

Query: 381 GTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    Q+  +           L+L   D     G ++ ++        H          
Sbjct: 128 GTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKH---------- 177

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R  +L S    DI +   +   + P++  +   +   E+ ++   V    ++       +
Sbjct: 178 RQSLLFSATFPDIIRTLAREILKDPVEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLL 237

Query: 493 EEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
               E      N R  V+      + F  S   +HG M   D++ V+  F N +C +L+A
Sbjct: 238 RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY-- 605
           + V   G+DV D S ++            H++ GR  R  +    + L  P  +      
Sbjct: 298 SDVAARGLDVEDLSAVVNYELPTDTETYRHRI-GRTARAGKHGLALSLVAPRETARVQAL 356

Query: 606 --------TRLSVLKNTEDGFLI---AEEDLKQ-------RKEGEILG--IKQSGMPKFL 645
                           T     +   A   L+         + G+ILG    ++G+    
Sbjct: 357 EAAQGQPLKWSRAPLATARPAQLPHAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAA 416

Query: 646 IAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           I +  ++   S + IAR      L        ++G+  R+
Sbjct: 417 IGKIAIYPTRSYVAIARAQVAKALAHL-HAGKIKGRRFRV 455


>gi|104782944|ref|YP_609442.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95111931|emb|CAK16656.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           entomophila L48]
          Length = 454

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 153/401 (38%), Gaps = 42/401 (10%)

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRM 294
            Q+    + + +       ++   +   K +  + F  PT  Q +AI   LQ    +   
Sbjct: 1   MQLEFFALARGYAVFSQFALH---ERLLKAVAELKFVEPTPVQAAAIPLALQGRDLR--- 54

Query: 295 LRILQGDVGSGKTLVALIAMAAAV--EAGGQ----AVIMAPIGILAQQHYEFIKKYTQNT 348
              +    GSGKT   ++ +   +   +G +    A+I+ P   LAQQ  + ++ ++Q T
Sbjct: 55  ---VTAQTGSGKTAAFVLPLLNRLVDLSGPRVEIRALILLPTRELAQQTLKQVQLFSQFT 111

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-------- 400
            I   ++TG      +   L ++      ++IGT     + +    L L  V        
Sbjct: 112 YIKSGLVTGGEDFKEQAAMLRKV----PDVLIGTPGRLLEQLNAGNLDLSHVKVLILDEA 167

Query: 401 DEQHRFGVQQRLK--LTQKATAPHVLLMTATP---IPRTLVLTSLGDIDISKITEKPAGR 455
           D     G  + ++    +       LL +AT      R ++   L D +   +       
Sbjct: 168 DRMLDMGFAEDMERLCKECENREQTLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLA 227

Query: 456 KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT 515
           +  +  II  +      + ++ +L+       I          N R++ +R         
Sbjct: 228 EGTRQQIITADHDQHKEQIVQWLLANETYQKAIIFT-------NTRALADRIYGHLVAKE 280

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
               ++HG     D++  +D FK+G  K+L+AT V   G+D+    ++I  +    G   
Sbjct: 281 VKAFVLHGEKDQKDRKLAIDRFKDGGSKVLVATDVAARGLDIDGLDLVINFDMPRSGDEY 340

Query: 576 LHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +H++ GR GR G E  +  L+ H   +  S     + +  E
Sbjct: 341 VHRI-GRTGRAGGEGLAISLITHNDWNLMSSIERYLKQQFE 380


>gi|328676918|gb|AEB27788.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida Fx1]
          Length = 442

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 140/373 (37%), Gaps = 41/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
            PT  Q  AI  +L+          +     G+GKT    + +   +    +A       
Sbjct: 23  KPTPIQAQAIPIVLKG------NDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQANRIKT 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I+ Y  NT I   +I G +    +   L +       I+I T  
Sbjct: 77  LILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK----GVEILIATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L   ++DE  R      +   +K    H LL       +TL+ ++
Sbjct: 133 RLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKK---IHKLL---PKKLQTLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I  +  +     P       +N   + I +    L +  K   +   I+++    
Sbjct: 187 TFSSEIKNLANEFLN-NPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  ++   + +    +   S + IHG  S   +   +  FK+    +L+AT +   
Sbjct: 246 VLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     +I  +  +     +H++ GR GR  +    I L     S +    LS +++
Sbjct: 306 GIDIAQLPCVINLDLPNVAEDYVHRI-GRTGRAGQEGLAISLV----SADEVESLSNIEH 360

Query: 614 TEDGFLIAEEDLK 626
              G L+  E+L+
Sbjct: 361 LI-GHLLPREELE 372


>gi|297539139|ref|YP_003674908.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp.
           301]
 gi|297258486|gb|ADI30331.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301]
          Length = 532

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 122/356 (34%), Gaps = 28/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 29  TPTPIQSKAIPQVLSG------GDLLAGAQTGTGKTAGFTLPILHLLSQKPLSEVVKGRP 82

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           + +++ P   LA Q  E +K Y +   +   +I G +    +   L++       I++ T
Sbjct: 83  RCLMLTPTRELAAQIEESVKVYGKFLPLTSTVIFGGVNANPQIARLKKP----LDILVAT 138

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D      + L  ++        + L +        +L M   P  R  +L S   
Sbjct: 139 PGRLLDHANQKNVDLSGIEILVLDEADRMLDMGFIRDIKKILAML--PKQRQNLLFSATF 196

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
            D  K         P    +   N   E++E+   ++++G K   +   I++        
Sbjct: 197 SDEIKALADGLLHNPGFVEVARRNTASELVEQTVHMVAQGHKRELMSHLIQQNDWQQVLI 256

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +    R            A IHG  S   +   +  FK+GT ++L+AT +   G+D
Sbjct: 257 FTRTKHGANRLAEKLVKDGIQSAAIHGNKSQSARTKALAQFKDGTMRVLVATDIAARGLD 316

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +     ++     +     +H++ GR GR     + + L      K       ++K
Sbjct: 317 IDQLPQVVNFELPNVPEDYVHRI-GRTGRAGSSGAAVSLVDREELKLLKDIEKLIK 371


>gi|115438787|ref|NP_001043673.1| Os01g0639100 [Oryza sativa Japonica Group]
 gi|75321708|sp|Q5VNM3|RH2_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 2
 gi|55297015|dbj|BAD68586.1| putative nicotiana eukaryotic translation initiation factor 4A
           [Oryza sativa Japonica Group]
 gi|55297606|dbj|BAD68952.1| putative nicotiana eukaryotic translation initiation factor 4A
           [Oryza sativa Japonica Group]
 gi|113533204|dbj|BAF05587.1| Os01g0639100 [Oryza sativa Japonica Group]
 gi|215707106|dbj|BAG93566.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222618929|gb|EEE55061.1| hypothetical protein OsJ_02769 [Oryza sativa Japonica Group]
          Length = 404

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 131/369 (35%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+ A+  I+           I Q   G+GKT +  +++   V+      QA+I++
Sbjct: 53  KPSAIQQRAVLPIISGRDV------IAQAQSGTGKTSMISLSVCQIVDTAVREVQALILS 106

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        I V    G        + LE       H++ GT     D
Sbjct: 107 PTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEH----GVHVVSGTPGRVCD 162

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        IL   DE    G + ++            V L++AT     L +T
Sbjct: 163 MIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMT 222

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + + + +   + L          Y      +   
Sbjct: 223 SKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTL-------CDLYDTLTITQAVI 275

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   +++++M  F++G  ++LI T V   G+D
Sbjct: 276 FCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLD 335

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S++I  +  +     +H++ GR GR       I        +             D
Sbjct: 336 VQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQID 394

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 395 EMPMNVADL 403


>gi|2500520|sp|Q40467|IF414_TOBAC RecName: Full=Eukaryotic initiation factor 4A-14; Short=eIF-4A-14;
           AltName: Full=ATP-dependent RNA helicase eIF4A-14
 gi|485943|emb|CAA55742.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 126/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS----GVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 172 MLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ +  +E L          Y      +   
Sbjct: 232 RKFMSKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTKD 386


>gi|256112630|ref|ZP_05453551.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 3 str.
           Ether]
 gi|265994071|ref|ZP_06106628.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|262765052|gb|EEZ10973.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 626

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 148/365 (40%), Gaps = 46/365 (12%)

Query: 272 SPTKSQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGG 322
           + T  Q + +  + L           ++    GSGKT+   +AMA  +        +AG 
Sbjct: 22  TLTAVQNAVLAPETLAS-------DLLVSAQTGSGKTVAFGLAMANTILEDELRFGDAGA 74

Query: 323 Q-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LA Q    ++    +T   +    G M     R+ALER     +HI++G
Sbjct: 75  PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GSHIVVG 130

Query: 382 THALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D I        Q   ++L   DE    G ++ L+           L  A    R
Sbjct: 131 TPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFI---------LGEAPEDRR 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I+++ ++        TV    ++  + I+ + + +   ++ + I   + 
Sbjct: 182 TLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHAD-IDYVAMPVPPHERDHAIINTLL 240

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                N       R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +        LH+  GR GR     +C+L+      +++   
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGTCVLVVPFSRRRSAERL 359

Query: 608 LSVLK 612
           L + K
Sbjct: 360 LHMAK 364


>gi|255712573|ref|XP_002552569.1| KLTH0C07964p [Lachancea thermotolerans]
 gi|238933948|emb|CAR22131.1| KLTH0C07964p [Lachancea thermotolerans]
          Length = 398

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/365 (21%), Positives = 143/365 (39%), Gaps = 45/365 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q  AI  I+           I Q   G+GKT    I M   ++      Q+++++
Sbjct: 45  APSAIQSRAITQIISGRDV------IAQAQSGTGKTATFTIGMLQVIDFKSRELQSLVLS 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q  + +        I     TG        K L        H++ GT     D
Sbjct: 99  PTRELAKQISQVVGNLGDYMNISAHACTGGKAMQTDTKKL----THGCHVVSGTPGRVLD 154

Query: 389 SIQYY-----KLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            I+        L ++I+DE         G +Q++          V         + +V++
Sbjct: 155 MIKRRILNTRHLKMLILDEADELLSETLGFKQQIYDIFAKLPKSV---------QVVVVS 205

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
           +    DI +IT+K     P+K ++      ++ + +    V  E  K   +C   +    
Sbjct: 206 ATMSKDILEITKKFMS-DPVKILVKRDEISLEGIKQYHVNVDREEWKFDTLCDLYDSLTI 264

Query: 497 -----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N + VV+  +S       ++A +HG M   D++ VM+ F++GT ++LI+T V 
Sbjct: 265 TQCVIFCNTKKVVDWLSSKLLQANFAVASMHGDMKQEDRDRVMNDFRSGTSRVLISTDVW 324

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV   S++I  +        +H++ GR GR       I      ++++    L  +
Sbjct: 325 ARGIDVQQVSLVINYDLPDNLENYIHRI-GRSGRFGRKGVAINF----ITRDDAQGLKAI 379

Query: 612 KNTED 616
           +    
Sbjct: 380 EKHYS 384


>gi|257126351|ref|YP_003164465.1| DEAD/DEAH box helicase [Leptotrichia buccalis C-1013-b]
 gi|257050290|gb|ACV39474.1| DEAD/DEAH box helicase domain protein [Leptotrichia buccalis
           C-1013-b]
          Length = 571

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 134/372 (36%), Gaps = 32/372 (8%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             +  ++   + +     P++ Q+  + ++L     K R   I Q   G+GKT    I +
Sbjct: 7   FGLSTEMLNALSKKGFEEPSEIQKLVVPELL-----KERTHLIGQAQTGTGKTAAFGIPI 61

Query: 315 AAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
              ++A    +A+I+AP   LA Q  + I        I V  + G     ++ K L+   
Sbjct: 62  LETIDADKTVRALILAPTRELANQVSDEIYSLKGEKDIKVLAVYGGASIENQIKRLKA-- 119

Query: 373 HGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPH 422
                I++GT     D I    L        +L   DE    G        L +      
Sbjct: 120 --GVDIVVGTPGRVMDLINKKVLKVNGLDYFVLDEADEMLNMGFLEDIEEILEKTNDEKK 177

Query: 423 VLLMTATPIPRTLVLTSLGDIDI--SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           +L  +AT     L +      +    K+ +K       + +   + + D+     +V+  
Sbjct: 178 MLFFSATIPKAILAIAKRFMPEHKLLKVEKKELTTNLTEQIYYEVKQEDKFEALCRVLDY 237

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           E      +  +         +S V+   +  +        IHG ++   ++  +D FK  
Sbjct: 238 EQNFYGIVFCRT--------KSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKQ 289

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   GIDV + + +I  +      + +H++ GR GR       I    P  
Sbjct: 290 ILTILVATDVAARGIDVSNLTHVINYSIPQEAESYVHRI-GRTGRAGHKGIAITFVTPRE 348

Query: 601 SKNSYTRLSVLK 612
           +        V K
Sbjct: 349 ASKLAQIKRVTK 360


>gi|222352149|ref|NP_061135.2| probable ATP-dependent RNA helicase DDX43 [Homo sapiens]
 gi|145559466|sp|Q9NXZ2|DDX43_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX43; AltName:
           Full=Cancer/testis antigen 13; Short=CT13; AltName:
           Full=DEAD box protein 43; AltName: Full=DEAD box protein
           HAGE; AltName: Full=Helical antigen
          Length = 648

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 128/365 (35%), Gaps = 39/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQ--- 323
            PT  Q  A   +LQ +        I     G+GKTL  L+     +       G +   
Sbjct: 264 KPTPIQSQAWPIVLQGID------LIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRP 317

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++ P   LA Q      KY+    +    + G   +  + + L++       III T
Sbjct: 318 GMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIEELKK----GVDIIIAT 372

Query: 383 HALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      +    +  +++DE  +           K      +L+   P  +T++ 
Sbjct: 373 PGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMK------ILLDVRPDRQTVMT 426

Query: 438 TSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           ++     + ++ +       I  V    ++ ++ + + I              ++     
Sbjct: 427 SATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSS 486

Query: 494 EKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             K   F S     + L         S+  +HG     D+E  +++FK G  ++LIAT +
Sbjct: 487 TDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDL 546

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D + +   +        +H++ GR GR       I        + +   +++
Sbjct: 547 ASRGLDVHDVTHVYNFDFPRNIEEYVHRI-GRTGRAGRTGVSITTLTRNDWRVASELINI 605

Query: 611 LKNTE 615
           L+   
Sbjct: 606 LERAN 610


>gi|254372784|ref|ZP_04988273.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570511|gb|EDN36165.1| ATP-dependent RNA helicase RhlE [Francisella novicida GA99-3549]
          Length = 442

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 140/373 (37%), Gaps = 41/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
            PT  Q  AI  +L+          +     G+GKT    + +   +    +A       
Sbjct: 23  KPTPIQAQAIPIVLKG------NDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQANRIKT 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I+ Y  NT I   +I G +    +   L +       I+I T  
Sbjct: 77  LILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK----GVEILIATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L   ++DE  R      +   +K    H LL       +TL+ ++
Sbjct: 133 RLLDLYSQSAVKFDSLNTFVLDEADRMLDMGFINDLKK---IHKLL---PKKLQTLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I  +  +     P       +N   + I +    L +  K   +   I+++    
Sbjct: 187 TFSSEIKNLANEFLN-NPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  ++   + +    +   S + IHG  S   +   +  FK+    +L+AT +   
Sbjct: 246 VLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     +I  +  +     +H++ GR GR  +    I L     S +    LS +++
Sbjct: 306 GIDIAQLPCVINLDLPNVAEDYVHRI-GRTGRAGQEGLAISLV----SADEVESLSNIEH 360

Query: 614 TEDGFLIAEEDLK 626
              G L+  E+L+
Sbjct: 361 LI-GHLLPREELE 372


>gi|78067127|ref|YP_369896.1| DEAD/DEAH box helicase-like [Burkholderia sp. 383]
 gi|77967872|gb|ABB09252.1| DEAD/DEAH box helicase-like protein [Burkholderia sp. 383]
          Length = 527

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 125/364 (34%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 55  TPTPIQAQAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 108

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       ++I
Sbjct: 109 PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRR----GVEVLI 164

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 165 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 224

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
                 L  T L +    ++    +    +  ++  +   D+    ++++   G K   +
Sbjct: 225 SGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIV 284

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      + IHG  + I++   +D+FK G  + L+AT
Sbjct: 285 F--------CNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEALVAT 336

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 337 DVAARGLDIAELPAVINFDLPFSAEDYVHRI-GRTGRAGATGDALSLCSPNERKQLADIE 395

Query: 609 SVLK 612
            ++K
Sbjct: 396 KLIK 399


>gi|315637497|ref|ZP_07892707.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
 gi|315478215|gb|EFU68938.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
          Length = 435

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 129/344 (37%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--------GQ 323
           +PT  Q  +I  IL       +   +     G+GKT    + +   ++           +
Sbjct: 23  TPTPIQSKSIPVILS------KKDVLAAAQTGTGKTAGFTLPLLQRLKDSNLKDKKTQVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  + ++ Y +       +I G +    ++  L++       III T 
Sbjct: 77  ALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKALLKK----GVDIIIATP 132

Query: 384 ALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
                   QDS+   K+  +++DE  R      +   +K      +L       + L+ +
Sbjct: 133 GRLLDLISQDSLDLSKIEFLVLDEADRMLDMGFINDIKK------ILAILPKQRQNLLFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    +I K+ +    + P+   +   N     +E++   + + +K   +   + +    
Sbjct: 187 ATFSNEIKKLAD-GLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLHLVNKNSWQ 245

Query: 499 N---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F       N L E         A IHG  S   +   +D FKNG  ++L+AT +  
Sbjct: 246 QVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLVATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            GID+     ++     +     +H++ GR GR       I L 
Sbjct: 306 RGIDIEQLPHVVNFELPNVAEDYVHRI-GRTGRAGNNGIAISLV 348


>gi|296104876|ref|YP_003615022.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059335|gb|ADF64073.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 631

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 162/439 (36%), Gaps = 47/439 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLSGRDV------LGMAQTGSGKTAAFSLPLLNNIDPDLRA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E + +++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + +    +I      R  I      +  + +    ++ + +E   A  I
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAII 250

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +LIAT
Sbjct: 251 FVRTKN-------ATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDILIAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 609 SVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             +K T     I E +L   +   +  +         +   +  + + +LL   +  A+ 
Sbjct: 362 RTMKLT-----IPEAELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAQIQPTAE- 415

Query: 666 ILTQDPDLTSVRGQSIRIL 684
              ++ D+ ++    +++ 
Sbjct: 416 --GEELDIETLAAALLKMA 432


>gi|170029482|ref|XP_001842621.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Culex
           quinquefasciatus]
 gi|167863205|gb|EDS26588.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Culex
           quinquefasciatus]
          Length = 815

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 137/385 (35%), Gaps = 54/385 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------E 319
            PT  Q  AI   LQ+         I   + GSGKTL  LI +   +            +
Sbjct: 409 EPTPIQRQAIPIGLQNRD------IIGIAETGSGKTLAFLIPLLNWIQGLPKIERQETAD 462

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G  A+I+AP   LAQQ  E  +K+ Q   I   ++ G + +  +   L         I+
Sbjct: 463 QGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGLSREEQGFRLRLGCE----IV 518

Query: 380 IGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVL---------- 424
           I T     D ++   L+L       +DE  R          QK      +          
Sbjct: 519 IATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEA 578

Query: 425 ---------LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                      T     +T++ T+     + ++      R+P    I  + +  E  E++
Sbjct: 579 EDATKLMENFNTKKKYRQTVMFTATMPPAVERLARTYL-RRPATVYIGSVGKPTERTEQI 637

Query: 476 KVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             +++E +K   +   +    E       N +   +      E    +   +HG      
Sbjct: 638 VHIVTENEKRKKLMEILSRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 697

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E  + S KNG+  +L+AT V   GID+ D S++I  +         H++ GR GR  + 
Sbjct: 698 REYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRI-GRTGRAGKT 756

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNT 614
              I       S   Y    ++  +
Sbjct: 757 GCAISFCTKDDSHLFYDLKQIIVAS 781


>gi|157737720|ref|YP_001490403.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
 gi|157699574|gb|ABV67734.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
          Length = 435

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 129/344 (37%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--------GQ 323
           +PT  Q  +I  IL       +   +     G+GKT    + +   ++           +
Sbjct: 23  TPTPIQSKSIPVILS------KKDVLAAAQTGTGKTAGFTLPLLQRLKDSNFKDKKTQVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  + ++ Y +       +I G +    ++  L++       III T 
Sbjct: 77  ALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKALLKK----GVDIIIATP 132

Query: 384 ALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
                   QDS+   K+  +++DE  R      +   +K      +L       + L+ +
Sbjct: 133 GRLLDLISQDSLDLSKIEFLVLDEADRMLDMGFINDIKK------ILAILPKQRQNLLFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    +I K+ +    + P+   +   N     +E++   + + +K   +   + +    
Sbjct: 187 ATFSNEIKKLAD-GLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLHLVNKNSWQ 245

Query: 499 N---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F       N L E         A IHG  S   +   +D FKNG  ++L+AT +  
Sbjct: 246 QVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLVATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            GID+     ++     +     +H++ GR GR       I L 
Sbjct: 306 RGIDIEQLPHVVNFELPNVAEDYVHRI-GRTGRAGNNGIAISLV 348


>gi|45219880|gb|AAH66938.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo sapiens]
          Length = 648

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 128/365 (35%), Gaps = 39/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQ--- 323
            PT  Q  A   +LQ +        I     G+GKTL  L+     +       G +   
Sbjct: 264 KPTPIQSQAWPIVLQGID------LIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRP 317

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++ P   LA Q      KY+    +    + G   +  + + L++       III T
Sbjct: 318 GMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIEELKK----GVDIIIAT 372

Query: 383 HALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      +    +  +++DE  +           K      +L+   P  +T++ 
Sbjct: 373 PGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMK------ILLDVRPDRQTVMT 426

Query: 438 TSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           ++     + ++ +       I  V    ++ ++ + + I              ++     
Sbjct: 427 SATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSS 486

Query: 494 EKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             K   F S     + L         S+  +HG     D+E  +++FK G  ++LIAT +
Sbjct: 487 TDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDL 546

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D + +   +        +H++ GR GR       I        + +   +++
Sbjct: 547 ASRGLDVHDVTHVYNFDFPRNIEEYVHRI-GRTGRAGRTGVSITTLTRNDWRVASELINI 605

Query: 611 LKNTE 615
           L+   
Sbjct: 606 LERAN 610


>gi|326405112|ref|YP_004285194.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301]
 gi|325051974|dbj|BAJ82312.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301]
          Length = 470

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/342 (19%), Positives = 132/342 (38%), Gaps = 27/342 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  +I  +L+     + ++ I Q   G+GKT   ++ +   + A          +
Sbjct: 24  TPTPIQARSIPVMLEG----HDLVGIAQ--TGTGKTAAFVLPILHRIAANRARPAPRACR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LA Q  +  + Y + T+  V ++ G      +     R       +++ T 
Sbjct: 78  ALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKPGPQ----ARRMESGVDLLVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    + L  V+        Q L L        +  M   P  R  V+ S    
Sbjct: 134 GRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQI--MAKLPRQRQAVMFSATMP 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL---SEGKKAYWICPQIEEKKESNF 500
              +       R P +  +   ++  + I++  ++L    +  K  W+   +  ++   F
Sbjct: 192 KPIRALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAPEEKKDKLAWLLADVAVERAIVF 251

Query: 501 RSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                  + +  H   +    A IHG  S   +E  +D F++G  ++L+AT +   GIDV
Sbjct: 252 TRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRVLVATDIAARGIDV 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            + S ++     +   + +H++ GR  R       I L  P 
Sbjct: 312 DNVSHVVNFELPNVPESYVHRI-GRTARAGAEGVAISLVEPS 352


>gi|260774211|ref|ZP_05883126.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260611172|gb|EEX36376.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 442

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/363 (18%), Positives = 123/363 (33%), Gaps = 26/363 (7%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQAVI 326
           T  Q  AI   +           +     GSGKTL  L+ M               + VI
Sbjct: 25  TDIQRQAIPVAMAGKD------LLASSKTGSGKTLAFLLPMLHKALKTKALSARDPRGVI 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA+Q Y  ++           +ITG      +  AL R        I+ T    
Sbjct: 79  LVPTRELAKQVYSELRSALAGLSYTATLITGGENFNDQVNALRR----GPKFIVATPGRL 134

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            D +++  L L  +D        + L L       H+         +TL+ ++  D    
Sbjct: 135 ADHLEHRSLFLQGLDTLILDEADRMLDLGFAPQLRHIHNAAKHRRRQTLMFSATLDHAEM 194

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------ 500
                   ++P +  I   N   + I +   +         +  +I    E         
Sbjct: 195 NTIAHEMLKEPKRIAIGLGNEQHKDIRQRFYLCDHLDHKEALLDRILNDAEYRQVIIFTA 254

Query: 501 -RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R+  ER  +        +  + G ++   + ++M  F+    K+L+ T +   G+D+ +
Sbjct: 255 TRADTERLTNKLNEQNLKVVALSGSLTQTQRNTIMSQFERAVFKILVTTDIASRGLDIAN 314

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +I  +        +H++ GR GR       I L  P    +S+ R+      +  F 
Sbjct: 315 VTHVINFDMPKHTEEYVHRV-GRTGRAGNQGDAISLVGPK-DWDSFKRVEAFLQQDIQFE 372

Query: 620 IAE 622
           + E
Sbjct: 373 VLE 375


>gi|255728265|ref|XP_002549058.1| hypothetical protein CTRG_03355 [Candida tropicalis MYA-3404]
 gi|240133374|gb|EER32930.1| hypothetical protein CTRG_03355 [Candida tropicalis MYA-3404]
          Length = 531

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/373 (17%), Positives = 149/373 (39%), Gaps = 42/373 (11%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
           L   P  PT  Q  +   +L       +   I   + GSGKT    +    ++       
Sbjct: 137 LNKFP-KPTPIQSVSWPFLLS------KKDVIGVAETGSGKTFAFGVPAINSIITTKNKN 189

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              + ++P   LA Q Y+ + + T +T +    + G + +  + + ++      A++++ 
Sbjct: 190 LSVLCISPTRELALQIYDNLIELTNDTNVKCVAVYGGVSKDEQIQKIK-----TANVVVA 244

Query: 382 THALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D     +I    +  +++DE  R   +   +  +      ++  T     +TL+
Sbjct: 245 TPGRLVDLINDGAINLSNIDYLVLDEADRMLEKGFEEDIK-----RIISSTNAEDRQTLM 299

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWICPQIEE 494
            T+    ++ ++      + PIK  +   + +  ++ I ++  V+++  K   +   + +
Sbjct: 300 FTATWPKEVRELANNFM-KSPIKVTVGDRDELSANKRITQIVEVVNKFDKEKKLINLLHK 358

Query: 495 KKESN------------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            + +N            ++    R  +L +     +A IHG +S   +   ++SFK+G C
Sbjct: 359 YQGNNNDSENKILVFALYKKEASRIENLLKRNRFQVAAIHGDLSQQQRTQALNSFKSGQC 418

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            LL+AT V   G+D+ +  ++I           +H++ GR GR  +      L+      
Sbjct: 419 NLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRI-GRTGRAGKTGIAHTLFTEDEKH 477

Query: 603 NSYTRLSVLKNTE 615
            S    ++L+   
Sbjct: 478 LSGALCNILRGAN 490


>gi|255078160|ref|XP_002502660.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
 gi|226517925|gb|ACO63918.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
          Length = 611

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 144/442 (32%), Gaps = 72/442 (16%)

Query: 227 RLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-------PFS-PTKSQE 278
             A  +L   ++A        K   G P  +         R +        +  PT  Q 
Sbjct: 125 AKAAAKLTEEEVAAYREEHAIKVPQGTPDPITRFEDAPFPRKLVAALLKQGYESPTPIQA 184

Query: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQAV------------ 325
            A    ++          I     GSGKT   L+   A + + G  A             
Sbjct: 185 QAWPIAVKGKDV------IAIAKTGSGKTCGFLLPALAKIVKQGATAAPDMEMVDGRFRP 238

Query: 326 --------IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                   ++AP   LA Q  +   K+       V  + G   +  + +AL       A 
Sbjct: 239 AAVVPHAIVLAPTRELAIQIGDECAKFCPAAGAKVVTLYGGASKGDQLRALRS----GAD 294

Query: 378 IIIGTHALFQDSI-------------QYYKLILVIVDEQHRFGVQQRL--KLTQKATAPH 422
           +++ T     D +               + ++L   D     G + ++   +    TA  
Sbjct: 295 VLVATPGRLHDFLAPPPGFSAPVSARNAHYVVLDEADRMLDMGFEPQIKKIIKMCPTARQ 354

Query: 423 VLLMTATPI---PRTLVLTSLGDIDISKI----TEKPAGRKPIKTV--IIPINRIDEVIE 473
            L+ TAT      +        D  + +I        A +   +T+  +    ++D  I 
Sbjct: 355 TLMFTATWPDGVRKIADTFLQPDAALVRIGDGGDRLTANKSITQTIEIVTEDQKLDRAIA 414

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            LK  L +G +    C         + +        +      S   IHG     ++E  
Sbjct: 415 VLKENLVDGARGIVFCGTKRRCDFIDRK--------MKAMGLRSAGAIHGDKDQAEREYS 466

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +D F+ G   LL+AT V   G+D+   +++++ +        +H++ GR GR  +     
Sbjct: 467 LDLFRKGKAPLLVATDVAARGLDIPGVTVVLVYDFPLQVEDYVHRI-GRTGRAGKEGKAH 525

Query: 594 LLYHPPLSKNSYTRLSVLKNTE 615
             +    +  +   + +L+  E
Sbjct: 526 CFFTEEDAGAARELVQILEGAE 547


>gi|82544201|ref|YP_408148.1| ATP-dependent RNA helicase DbpA [Shigella boydii Sb227]
 gi|81245612|gb|ABB66320.1| ATP-dependent RNA helicase [Shigella boydii Sb227]
 gi|320174309|gb|EFW49464.1| ATP-dependent RNA helicase DbpA [Shigella dysenteriae CDC 74-1112]
 gi|332094952|gb|EGI99992.1| ATP-independent RNA helicase dbpA [Shigella boydii 3594-74]
          Length = 457

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAVISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|218508404|ref|ZP_03506282.1| ATP-dependent RNA helicase protein [Rhizobium etli Brasil 5]
          Length = 375

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 136/349 (38%), Gaps = 44/349 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
             T  Q+S +     D++       ++    GSGKT+   +A+A  +  G          
Sbjct: 22  ELTPVQKSMLDP---DLAAS---DALVSAQTGSGKTVAFGLALAPTLLEGSERFGNAGAP 75

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    ++   + T  ++    G M     R+ALER     AHI++GT
Sbjct: 76  LALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRALER----GAHIVVGT 131

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I+   L        +L   DE    G ++ L+           L +A    RT
Sbjct: 132 PGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFI---------LDSAPDERRT 182

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I+K+  K   R  ++       +    IE   ++++   +   I   +  
Sbjct: 183 LMFSATVPAAIAKLA-KSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLRY 241

Query: 495 KKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            + +N       R+ V    +   +   S+  + G ++  ++   + + ++G  ++ IAT
Sbjct: 242 YEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIAT 301

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            V   GID+    ++I  +        LH+  GR GR        ++  
Sbjct: 302 DVAARGIDLPGLDLVIHADLPTNPETLLHR-SGRTGRAGRKGISAMIVP 349


>gi|315634792|ref|ZP_07890074.1| ATP-dependent RNA helicase DeaD [Aggregatibacter segnis ATCC 33393]
 gi|315476344|gb|EFU67094.1| ATP-dependent RNA helicase DeaD [Aggregatibacter segnis ATCC 33393]
          Length = 600

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/423 (18%), Positives = 154/423 (36%), Gaps = 49/423 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG 322
            ++ F  P+  Q+  I  +L+          +     GSGKT    + + A +   E   
Sbjct: 22  SDLGFETPSPIQQICIPHLLEGRDV------LGMAQTGSGKTAAFSLPILAQIDPTEKHP 75

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  +++ +    I +  + G      R     R     A +++G
Sbjct: 76  QLLVMAPTRELAIQVADACEQFVKYAKGINIVTLYGG----QRYDIQLRALKQGAQVVVG 131

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D ++   L        +L   DE  R G    ++        H          +
Sbjct: 132 TPGRILDHLRRGTLSLAELKAIVLDEADEMLRMGFIDDVETVMAELPEH---------HQ 182

Query: 434 TLVLTSLGDIDISKITEKPA-GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           T + ++     I +IT++     + +K      +  D       V       A     ++
Sbjct: 183 TALFSATMPEPIRRITKRFMKDPQEVKIKATQQSAPDIAQSCWYVHGVRKNDALLRFLEV 242

Query: 493 EEKKESNFRSVVER----FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           E+   +   +  +        L E      A ++G M+   +E  +D  ++G+  +++AT
Sbjct: 243 EDFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIVVAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+   S+++  +      + +H++ GR GR       +L   P   +      
Sbjct: 303 DVAARGIDIERISLVVNYDIPLDAESYVHRI-GRTGRAGRSGRALLFVEPRERRLLRNVE 361

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGI-KQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
            ++K   +   +           E+L   ++      +  Q E HD  LE+ R+  + + 
Sbjct: 362 HLIKKNIEEVELPNH--------EVLQACRRKKFKDKITTQLEHHD--LELYRELLEDMF 411

Query: 668 TQD 670
           T D
Sbjct: 412 TAD 414


>gi|209964678|ref|YP_002297593.1| DeaD [Rhodospirillum centenum SW]
 gi|209958144|gb|ACI98780.1| DeaD [Rhodospirillum centenum SW]
          Length = 528

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 129/360 (35%), Gaps = 41/360 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
           +PT  QE AI  +LQ          +     G+GKT    + M   +  G       +++
Sbjct: 23  TPTPIQEKAIPWVLQGRDV------LGCAQTGTGKTASFTLPMIEILAQGRARARMPRSL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  +  + Y +  ++ + ++ G      + K LER       ++I T   
Sbjct: 77  ILEPTRELAAQVADNFEIYGKYHKLNMALLIGGESFGDQVKKLER----GVDVLIATPGR 132

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIPRTL 435
             D  +   ++L  +     DE  R      +   ++           L  +AT  P   
Sbjct: 133 MIDLFERGNILLSDIKILVIDEADRMLDMGFIPDIERIVGLLPKLRQTLFFSATMPPEIR 192

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVI----IPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            L     ++  +IT  P    P  TV     +  +     + R  +   + K A+  C +
Sbjct: 193 RLADQFLMNPREITVAPPA-SPAATVTQALAVAYDEDKRKVLRHLLQTEDVKNAFIFCNR 251

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    + V     SL  H   +   +HG M    +   +++FK G+  LL+ + V 
Sbjct: 252 --------KKDVGILHQSLSRHG-FNAGALHGDMVQSKRTETLEAFKQGSIDLLVCSDVA 302

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+   S +   +        +H++ GR GR         +  P   +       ++
Sbjct: 303 ARGIDIKGVSHVFNFDVPFNAEDYVHRI-GRTGRAGLTGRAFTIAAPEDGRLVQAIEKLI 361


>gi|205354184|ref|YP_002227985.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273965|emb|CAR38970.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326629305|gb|EGE35648.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 618

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 164/443 (37%), Gaps = 55/443 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LTDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW--GMRKNEAL--VRFLEAEDFD 246

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 247 AAIIFVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 298

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 357

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
                 +K T     I E +L   +   +  +         +   +  + + +LL   + 
Sbjct: 358 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQP 412

Query: 662 DAKHILTQDPDLTSVRGQSIRIL 684
            A+    ++ DL ++    +++ 
Sbjct: 413 SAE---GEELDLETLAAALLKMA 432


>gi|50555013|ref|XP_504915.1| YALI0F02695p [Yarrowia lipolytica]
 gi|74632960|sp|Q6C347|FAL1_YARLI RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49650785|emb|CAG77720.1| YALI0F02695p [Yarrowia lipolytica]
          Length = 397

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 136/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           +P+  Q  AI  I++          I Q   G+GKT    I+M   ++      QA++++
Sbjct: 46  APSAIQSRAITQIIKGRDT------IAQAQSGTGKTATFSISMLEVIDTKHRETQAMVLS 99

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I        +      G    +   K LE        ++ GT     D
Sbjct: 100 PTRELATQIQSVILALGDYMNVQCHACIGGTSLSVDMKKLEAGQ----QVVSGTPGRCLD 155

Query: 389 SIQ--------YYKLILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            I+           LIL   DE    G Q+++    +    A  V++++AT     L +T
Sbjct: 156 MIKKGCLRTKNLKMLILDEADELLNKGFQEQIYDIYRYLPAATQVVVVSATLPHSVLEMT 215

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    D  +I  K      + +K   I + + +   + L  +       +A   C     
Sbjct: 216 SKFMTDPVRILVKRDELTLEGLKQYFIAVEQEEWKFDTLCDLYDTLTITQAVIFCNT--- 272

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+      +    ++  +HG M+  D++S+M+ F++G  ++LI+T V   G
Sbjct: 273 ------KKKVDWLTQQMKDNNFTVCSMHGDMAQKDRDSIMNEFRSGRSRVLISTDVWARG 326

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           IDV   S++I  +        +H++ GR GR       I                     
Sbjct: 327 IDVQQVSLVINYDLPPNRENYIHRI-GRSGRFGRKGVAINFATNDDITTLRDIEQYYSTQ 385

Query: 615 EDGFLIAEEDL 625
            D   +   D+
Sbjct: 386 IDEMPVNVTDM 396


>gi|306844397|ref|ZP_07476987.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
 gi|306275210|gb|EFM56960.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
          Length = 626

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 148/365 (40%), Gaps = 46/365 (12%)

Query: 272 SPTKSQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGG 322
           + T  Q + +  + L           ++    GSGKT+   +AMA  +        +AG 
Sbjct: 22  TLTAVQNAVLAPETLAS-------DLLVSAQTGSGKTVAFGLAMANTILEDELRFGDAGA 74

Query: 323 Q-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LA Q    ++    +T   +    G M     R+ALER     +HI++G
Sbjct: 75  PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GSHIVVG 130

Query: 382 THALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D I        Q   ++L   DE    G ++ L+           L  A    R
Sbjct: 131 TPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFI---------LGEAPEDRR 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I+++ ++        TV    ++  + I+ + + +   ++ + I   + 
Sbjct: 182 TLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHAD-IDYVAMPVPPHERDHAIINTLL 240

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                N       R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +        LH+  GR GR     +C+L+      +++   
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGTCVLVVPFSRRRSAERL 359

Query: 608 LSVLK 612
           L + K
Sbjct: 360 LHMAK 364


>gi|229592757|ref|YP_002874876.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
 gi|229364623|emb|CAY52530.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 444

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 130/370 (35%), Gaps = 40/370 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------ 318
           L  + + +PT  Q  AI  +L           +     G+GKT    + +   +      
Sbjct: 16  LETLGYQTPTPVQAQAIPAVLAGRD------LMAAAQTGTGKTAGFAVPLLQLLTTEGPK 69

Query: 319 --EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+I+ P   LA+Q +  + +Y Q+  +    + G +    +   L +      
Sbjct: 70  VAANSARALILCPTRELAEQVHASVAEYAQHLPLTTYAVYGGVSINPQMMKLRK----GV 125

Query: 377 HIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLM 426
            I++ T     D          Q   L+L   D     G  + L             LL 
Sbjct: 126 DILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKRQTLLF 185

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGR--KPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +AT      +L      D   I   P       +K  ++P+++  +     ++ +   +K
Sbjct: 186 SATFSDEIRLLAGQMLNDPLTIEVSPRNVAANTVKQWVVPVDKKRK----PELFVHLMRK 241

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             W    +  K  +   ++V++   L      +   IHG      ++  +D FK+   ++
Sbjct: 242 GRWKQVLVFAKTRNGVDALVDKLQGL----GINADGIHGDKPQATRQRALDRFKSSEVQI 297

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT V   G+D+ D  +++  +        +H++ GR GR       I L         
Sbjct: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRI-GRTGRAGNTGEAISLVCADEVNML 356

Query: 605 YTRLSVLKNT 614
                + + T
Sbjct: 357 SAIEMLTRQT 366


>gi|307104817|gb|EFN53069.1| eukaryotic initiation factor 4A (ATP-dependent RNA helicase eIF4A)
           [Chlorella variabilis]
          Length = 410

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+  I      +     +  I Q   G+GKT      +   ++      QA+++A
Sbjct: 59  KPSAIQQKGI------VPFGKGLDVIQQAQSGTGKTATFCAGILQNLDYTLVECQALVLA 112

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       +      G        + L+       H+++GT     D
Sbjct: 113 PTRELAQQIEKVMRALGDYLNVKCHACVGGTSVREDTRILQS----GVHVVVGTPGRVYD 168

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 169 MLRRRALRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATLPPEALEIT 228

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + + R D  ++ L          Y      +   
Sbjct: 229 RKFMNKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTL-------CDLYETLAITQSVI 281

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 282 FANTRRKVDWLTDKMRERDHTVSATHGDMDQNTRDVIMREFRSGSSRVLITTDLLARGID 341

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +  +     LH++ GR GR       I      
Sbjct: 342 VQQVSLVINYDLPNNPENYLHRI-GRSGRFGRKGVAINFVTND 383


>gi|156550255|ref|XP_001602397.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 715

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/368 (19%), Positives = 125/368 (33%), Gaps = 45/368 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---------GG 322
            P+  Q  A   +L        M+ I Q   G+GKTL  L+     ++          G 
Sbjct: 296 KPSPIQCQAWPILL----SGKDMIGIAQ--TGTGKTLAFLLPALIHIDNQDTPRSERSGP 349

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             ++MAP   LA Q  + + KY  +  I    + G   +  +   + +       I+I T
Sbjct: 350 TVLVMAPTRELALQIEKEVNKYYYH-GIKAVCVYGGGDRKKQMNIVSK----GVEIVIAT 404

Query: 383 HALFQDSIQ--------YYKLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP 432
                D IQ           L+L   D     G   Q R  L         ++ +AT  P
Sbjct: 405 PGRLNDLIQTEVLDVKCVSYLVLDEADRMLDMGFEPQIRKSLLDIRPDRQTVMTSATWPP 464

Query: 433 --RTLVLTSLGDI---DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             R L  + +       +  +  K       K  I+      +V++     ++   K   
Sbjct: 465 GVRRLAESYMKSPITVCVGSLDLKAVHSVTQKIWIVDEEEKTDVLKDFFHNMAPSDKVIV 524

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +  V+   S       +   IHG     D+E  ++  K G   +L+A
Sbjct: 525 FF---------GKKCKVDDIGSDLALSGVACQSIHGGREQADREQALEDIKTGDVNILLA 575

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ D + +   +        +H++ GR GR  +    I L        +   
Sbjct: 576 TDVASRGIDIEDITHVFNYDFPRDIEEYVHRV-GRTGRAGKTGESISLVTRRDWGLTKEL 634

Query: 608 LSVLKNTE 615
           + +L+  E
Sbjct: 635 IKILEEAE 642


>gi|74312285|ref|YP_310704.1| ATP-dependent RNA helicase DbpA [Shigella sonnei Ss046]
 gi|73855762|gb|AAZ88469.1| ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|323168225|gb|EFZ53911.1| ATP-independent RNA helicase dbpA [Shigella sonnei 53G]
          Length = 457

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAVISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|261392319|emb|CAX49846.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
          Length = 457

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 128/374 (34%), Gaps = 46/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q +AI   L           +     G+GKT   ++     ++    A        
Sbjct: 26  PTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHP 79

Query: 325 ---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++ P   LA Q  + ++ Y +N  +   ++ G M    +   L         I++ 
Sbjct: 80  VRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCE----IVVA 135

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-- 429
           T     D ++           ++L   D     G     R  +         LL +AT  
Sbjct: 136 TVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSATFS 195

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              R L    +   +  ++T +      ++  II ++ I +     ++++        + 
Sbjct: 196 APIRKLAQDFMNAPETVEVTAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQVIVF 255

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +  V+R          S   IHG  S   +   +++FK+G+ ++L+AT 
Sbjct: 256 --------CKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATD 307

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   G+D+ +   +I           +H++ GR GR       I L    + ++      
Sbjct: 308 IAARGLDIAELPFVINYEMPTQPEDYVHRI-GRTGRAGADGVAISL----MDESEQKMFE 362

Query: 610 VLKNTEDGFLIAEE 623
            +K      L+ E 
Sbjct: 363 AIKKLTGNKLLIER 376


>gi|257092638|ref|YP_003166279.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045162|gb|ACV34350.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 481

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 119/352 (33%), Gaps = 43/352 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------E 319
            PT  Q  AI  IL           +     G+GKT    + +   +             
Sbjct: 25  EPTPVQAQAIPVILAGRDV------LAGAQTGTGKTAGFTLPLLQRLATRAAPAGVPGQR 78

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +  +A+I+ P   LA Q  E ++ Y +   +   +I G +    +  AL R       I+
Sbjct: 79  SPVRALILTPTRELAAQIEESVRTYGKYLPLKSTLIYGGVNINPQIDALRR----GVDIL 134

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT 429
           + T     D +Q           L+L   D     G     R  L         LL +AT
Sbjct: 135 VATPGRLLDHLQQKTVSLAQVEILVLDEADRMLDMGFIRDIRRILALLPAKRQNLLFSAT 194

Query: 430 --PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                R L    L    + ++  + A  + +   + P++   +      +V S   +   
Sbjct: 195 FSNEIRKLADGLLHAPAMVEVARRNAESELVAQRVHPVDSWRKRELLTHLVASGDWRQVL 254

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +  +         +S   R              IHG  S   +   +  FK GT ++L+A
Sbjct: 255 VFTR--------MKSGANRLAEQLCKVGIEATAIHGNKSQPARTRALAGFKAGTVRVLVA 306

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           T +   G+D+ +   ++     H     +H++ GR GR       I L  P 
Sbjct: 307 TDIAARGLDIEELPHVVNFELPHVPEDYVHRI-GRTGRAGSTGEAISLVSPE 357


>gi|241895833|ref|ZP_04783129.1| DEAD box ATP-dependent RNA helicase SrmB [Weissella
           paramesenteroides ATCC 33313]
 gi|241870876|gb|EER74627.1| DEAD box ATP-dependent RNA helicase SrmB [Weissella
           paramesenteroides ATCC 33313]
          Length = 512

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/342 (19%), Positives = 126/342 (36%), Gaps = 40/342 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  QE  I   +           I Q   G+GKT    + +   ++      QA++++P 
Sbjct: 25  TPIQEKTIPLTMAGKDV------IGQAQTGTGKTAAFGLPILEMIDNENKDVQALVVSPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  + + K  ++  + V+ + G      +   L    +  AHI++GT     D I
Sbjct: 79  RELAIQTQDELFKLGRDKHVRVQAVFGGADIRRQINGL----NHGAHIVVGTPGRLIDHI 134

Query: 391 QY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIP--RTLVLT 438
           +           L+L   DE    G  + +   L         LL +AT  P  + + + 
Sbjct: 135 RRGTINLSHVKTLVLDEADEMLNMGFLEDIESILKAVPDERQTLLFSATMPPAIKRIGVQ 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  +I  K      +    + +   ++       VL+       I    + +   
Sbjct: 195 FMTNPEHIQIAAKELTTDLVDQYYVRVRDFEK-----FDVLTR------ILDVQQPELAI 243

Query: 499 NFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F     R + L    T      A IHG ++   +  V+  FKN   K+L+AT V   G+
Sbjct: 244 MFGRTKRRVDELTRGLTLRGFKAAGIHGDLTQQKRTQVLKQFKNREIKILVATDVAARGL 303

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           D+   + +   +      + +H++ GR GR     + +    
Sbjct: 304 DISGVTYVYNFDIPQDSESYVHRI-GRTGRAGAHGNSVTFVS 344


>gi|221483330|gb|EEE21649.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
 gi|221507816|gb|EEE33403.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 550

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 134/365 (36%), Gaps = 38/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L        M+ I   + GSGKTL  L+     + A        G  
Sbjct: 151 KPTAIQVQGWPIAL----SGRDMIGI--AETGSGKTLAFLLPAIVHINAQPYLNKGDGPI 204

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   L +Q     + +  +++I   +  G +P+  +   LER     A I +   
Sbjct: 205 VLILAPTRELVEQIRAQCRTFAASSKIHHAVAYGGVPKRPQIMELER----GAEICVACP 260

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       ++  +++DE  R          +K  +         P  +TL+ +
Sbjct: 261 GRLIDFLESRVTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIR------PDRQTLMWS 314

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +    ++  +       +P+   +  ++ +  + I++  +V+ E +K   +   +    +
Sbjct: 315 ATWPKEVQNLARDLCKEEPVHINVGSLDLQACQNIKQEVMVVQEYEKRGQLMSLLRRIMD 374

Query: 498 S-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +   +               +HG     ++  V+D FKNG   +++AT V
Sbjct: 375 GSKILIFAETKRGADNLTRDMRVEGWPALSLHGDKKQEERTWVLDEFKNGRNPIMVATDV 434

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D   +I  +  +     +H++ GR GR          + P   + +   + V
Sbjct: 435 ASRGLDVKDIRHVINYDMPNQIEDYIHRI-GRTGRAGAKGCAYTFFTPDKPRLARELVRV 493

Query: 611 LKNTE 615
           L+   
Sbjct: 494 LRGAN 498


>gi|237839461|ref|XP_002369028.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211966692|gb|EEB01888.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
          Length = 550

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 134/365 (36%), Gaps = 38/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L        M+ I   + GSGKTL  L+     + A        G  
Sbjct: 151 KPTAIQVQGWPIAL----SGRDMIGI--AETGSGKTLAFLLPAIVHINAQPYLNKGDGPI 204

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   L +Q     + +  +++I   +  G +P+  +   LER     A I +   
Sbjct: 205 VLILAPTRELVEQIRAQCRTFAASSKIHHAVAYGGVPKRPQIMELER----GAEICVACP 260

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       ++  +++DE  R          +K  +         P  +TL+ +
Sbjct: 261 GRLIDFLESRVTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIR------PDRQTLMWS 314

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           +    ++  +       +P+   +  ++ +  + I++  +V+ E +K   +   +    +
Sbjct: 315 ATWPKEVQNLARDLCKEEPVHINVGSLDLQACQNIKQEVMVVQEYEKRGQLMSLLRRIMD 374

Query: 498 S-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +   +               +HG     ++  V+D FKNG   +++AT V
Sbjct: 375 GSKILIFAETKRGADNLTRDMRVEGWPALSLHGDKKQEERTWVLDEFKNGRNPIMVATDV 434

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D   +I  +  +     +H++ GR GR          + P   + +   + V
Sbjct: 435 ASRGLDVKDIRHVINYDMPNQIEDYIHRI-GRTGRAGAKGCAYTFFTPDKPRLARELVRV 493

Query: 611 LKNTE 615
           L+   
Sbjct: 494 LRGAN 498


>gi|311745694|ref|ZP_07719479.1| putative ATP-dependent RNA helicase [Algoriphagus sp. PR1]
 gi|126575136|gb|EAZ79486.1| putative ATP-dependent RNA helicase [Algoriphagus sp. PR1]
          Length = 453

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 133/357 (37%), Gaps = 35/357 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----GGQAVIMA 328
           PT  QE AI   L           +     G+GKT   ++ +   V+       +A+I+A
Sbjct: 29  PTAIQEKAIPLALAGHDV------LGIAQTGTGKTAAYVLPILMKVKYAQGLHARALILA 82

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   L  Q  E  K+    T + V  + G +    + + ++        III T   F D
Sbjct: 83  PTRELVMQIEEVTKQLATYTDLRVVSLYGGLGPKTQIETIQA----GVDIIISTPGRFLD 138

Query: 389 -----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
                 +    L  +++DE  +      +   +       +        + L+ ++    
Sbjct: 139 IYRKNMLYTKALKTMVLDEADKMMDMGFMPQIRSILEVIPV------KRQNLLFSATFGT 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--- 500
            I K+  +     P +  + P     E I+++   +   K    +  ++ E++  N    
Sbjct: 193 RIEKLAHEFLEF-PERVEVTPQATTAETIDQVMYFVPNIKTKINLLAKLLEEEAVNRAII 251

Query: 501 -----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                ++  E F+ L       + +IH       + + M+ FK G  ++L+AT V   G+
Sbjct: 252 FTRSRKNAEEVFHFLENRHFGEVRVIHANKGQNTRINSMEDFKGGEVRILVATDVASRGL 311

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           D+   S +I  +        +H++ GR GR E     I   +P  + +      +++
Sbjct: 312 DITMVSHVINFDIPLIYEDYVHRI-GRTGRAEHEGKAISFVNPAEAYHFEKIEEIIR 367


>gi|332186948|ref|ZP_08388689.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
 gi|332012958|gb|EGI55022.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
          Length = 459

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 128/356 (35%), Gaps = 27/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA-MAAAVEAGGQAV----- 325
            PT  Q  +I  +L+          +     G+GKT   ++  +   VEA  + +     
Sbjct: 23  EPTPIQRDSIPTLLEGRD------LLGIAQTGTGKTAAFVLPSIQRLVEANKRVLPTHCR 76

Query: 326 --IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
             ++AP   LA Q  +  K Y + +++ V  + G       R+ L R       I++ T 
Sbjct: 77  MLVLAPTRELASQIADNAKGYAKFSKLAVATVFGGTSINKNRQDLSR----GVDILVATP 132

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D ++   L L +++        Q L L        ++ M      +TL  ++    
Sbjct: 133 GRLIDLVEQGFLNLSMIEILVLDEADQMLDLGFIHALRRIVKMI-PRKRQTLFFSATMPA 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------E 497
            I  + +K     P    + P++   E +E+    +++ +K   +   + +         
Sbjct: 192 AIRDLADKFLD-NPATVSVTPVSTTAERVEQSVTFVTQQEKQALLTILLADPAIELALVF 250

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           +  +   +R   L      +   IHG  S   +E  +  F++G  ++L+AT +   GID+
Sbjct: 251 TRTKHGADRVVKLLAGNGIAANAIHGNKSQGQRERALGEFRSGQTRVLVATDIAARGIDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
              S +      +     +H++ GR  R       I                + + 
Sbjct: 311 PGVSHVFNFELPNVAEQYVHRI-GRTARAGRSGLAIAFCAEDERPYLKDIEKLTRQ 365


>gi|238897556|ref|YP_002923235.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465313|gb|ACQ67087.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 598

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 160/442 (36%), Gaps = 57/442 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 22  LTDLGYEKPSPIQLECIPHLLNG------SDVLGMAQTGSGKTAAFGLPLLQNIKPDIKA 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  + +  +++    I V  + G  P   + KAL +       I++
Sbjct: 76  PQILVLAPTRELAVQVAQALTNFSKYMKGINVLALYGGQPYHVQLKALRQ----GPQIVV 131

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++   L        +L   DE  R G  + ++           L       
Sbjct: 132 GTPGRLLDHLKRGTLNLSSLTGLVLDEADEMLRMGFIEDVENI---------LAKIPAEH 182

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE-RLKVVLSEGKKAYWICPQ 491
           +T + ++     I +IT +         +   +    ++ +    V      +A     +
Sbjct: 183 QTALFSATMPDAIRRITRRFMKEPKEVRIHSNVTTKPDINQSYWPVFGMRKNQALVRFLE 242

Query: 492 IEEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +E+            + +E   +L +   +S A+ +G M+   +E  ++  K+G   +LI
Sbjct: 243 VEDFDAAIIFVRTKNATLEVAEALEDSGYNSAAL-NGDMNQSLREQTLERLKDGRLDILI 301

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV   S+++  +      + +H++ GR GR       +L       +    
Sbjct: 302 ATDVAARGLDVDRISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLLKN 360

Query: 607 RLSVLKNTEDGFLIA-EEDLKQRKEGEILGI-KQSGM---------------PKFLIAQP 649
              V+K       +   E L QR+  +     +Q                  P+      
Sbjct: 361 IERVIKQPIPEIQLPKAELLSQRRLEKFAATVRQHIESSDLEMYKTLLKKLRPEEPFDLE 420

Query: 650 ELHDSLLEIARKDAKHILTQDP 671
            +  +LL++A+ +   IL  DP
Sbjct: 421 MIAAALLKMAQSERPLILPPDP 442


>gi|91201974|emb|CAJ75034.1| similar to ATP-independent RNA helicase DbpA [Candidatus Kuenenia
           stuttgartiensis]
          Length = 449

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 129/376 (34%), Gaps = 42/376 (11%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N    I   I      +PT  Q  AI  IL+          +     G+GKT   ++ +
Sbjct: 7   FNFNSNIVAGIKSVGYVTPTPIQLQAIPLILEG------TDVMGLAQTGTGKTAAFVLPI 60

Query: 315 AAAVEAGGQ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
              +  G +    A+++ P   LA+Q  +  K     T +    I G +    +   L  
Sbjct: 61  LHRLMQGERGKIRALVIVPTRELAEQVLQDFKTLGSKTSLRSISIYGGVSITQQINRLRS 120

Query: 371 IAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATA 420
                  I++       D ++           L+L   D     G     R  +   +  
Sbjct: 121 ----GVEIVVACPGRLLDHMKQRTIELSRVEVLVLDEADHMFDMGFLPDIRKIIKCLSHK 176

Query: 421 PHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
              LL +AT     R L   +L      ++  K A    +K  + P+ +  ++   LK++
Sbjct: 177 RQTLLFSATMPDEIRKLAQEALTKPVTVQLG-KTAPASTVKHALYPVKQHLKIPLLLKIL 235

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMD 535
                ++  I  + +            R  SL +             G +S   +++ + 
Sbjct: 236 QHTDTQSVLIFTRTKY-----------RAKSLGDRLIRAGYKATSFQGNLSQPQRQAALG 284

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F+NG  ++L+AT +   GID+   S +I  +      A +H++ GR GR         L
Sbjct: 285 GFRNGAYQILVATDIAARGIDISQISHVINYDIPDTPEAYVHRI-GRTGRAARTGDAFTL 343

Query: 596 YHPPLSKNSYTRLSVL 611
                        ++L
Sbjct: 344 VTEDDKAMVRGIENIL 359


>gi|21672635|ref|NP_660702.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25090073|sp|Q8K9H6|DEAD_BUCAP RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|21623269|gb|AAM67913.1| ATP-dependent RNA helicase DEAD [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 601

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 129/360 (35%), Gaps = 38/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q + I  +L+          +     GSGKT    + +   +       Q +++A
Sbjct: 28  KPSPIQAACIPLLLEGRDV------LGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLA 81

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E    +++    I V  + G      R +   R       I++GT     
Sbjct: 82  PTRELAVQVAEAFSDFSKYIMGIHVLPLYGG----QRYEVQLRALRQGPQIVVGTPGRLL 137

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLT 438
           D ++   L        +L   DE  R G  + ++           +M+  P   +T + +
Sbjct: 138 DHLKRGTLNLSNLYALVLDEADEMLRMGFIEDVE----------TIMSQIPKEHQTALFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I +I+++         +   I    ++ +   +V      A     ++E+   +
Sbjct: 188 ATMPEAIRRISKRFMKNPQEIKIQSNITTRPDIKQSYWMVYGRKTDALIRFLEVEDFSAT 247

Query: 499 ----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 ++     +   E    + A ++G M+   +E  ++  K+G   +LIAT V   G
Sbjct: 248 IIFVKTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKSGRLDILIATDVAARG 307

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S +I  +      + +H++ GR GR       +L       +        +  T
Sbjct: 308 LDVDRISFVINYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIERTINQT 366


>gi|184200206|ref|YP_001854413.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
           DC2201]
 gi|183580436|dbj|BAG28907.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
           DC2201]
          Length = 719

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/385 (18%), Positives = 133/385 (34%), Gaps = 48/385 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           L  + +  P+  Q + I  +L           +     G+GKT    +   + +      
Sbjct: 91  LDEVGYEYPSPIQAATIPALLSGRDV------VGLAQTGTGKTAAFAVPALSKLAELSDL 144

Query: 321 -GGQ----AVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHG 374
            G Q     +++AP   LA Q  E    Y  + +   V  + G      +   L+R    
Sbjct: 145 HGPQRSTRVLVLAPTRELALQVAEAFGSYATHLEDFTVLPVYGGSSYGPQLAGLKR---- 200

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVL 424
            A +++GT     D +    L L  +        DE  R G  + +   L Q      V 
Sbjct: 201 GAQVVVGTPGRVIDHLSKGSLKLDDIAYVVLDEADEMLRMGFSEDVEKILAQTPVEKQVA 260

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV-----IIPINRIDEVIERLKVVL 479
           L +AT       +      D  +IT K        T      ++  +++D +   L+V  
Sbjct: 261 LFSATMPKAIRRIAQQYLRDPQEITVKAKTTTGTNTRQRYMQVMGPHKLDAMTRVLEVED 320

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +G   +              ++  E      +    + A I+G +    +E  +DS + 
Sbjct: 321 YDGVIVFV-----------RTKAATEEIADKLKARGYTAAAINGDIPQNLRERTVDSLRE 369

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+DV   S+++  +  H   + +H++ GR GR       IL   P 
Sbjct: 370 GKIDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRI-GRTGRAGRKGEAILFMTPR 428

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEED 624
                       +   +   +   D
Sbjct: 429 EKYLLRAIEKATRQPVEQMRVPTTD 453


>gi|121601761|ref|YP_989161.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120613938|gb|ABM44539.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain
           protein [Bartonella bacilliformis KC583]
          Length = 471

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/350 (20%), Positives = 133/350 (38%), Gaps = 43/350 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            P   QE AI      M +   +L I Q   GSGKTL   + + + +            +
Sbjct: 39  EPKPIQEQAIPV----MLKGRDILGIAQ--TGSGKTLAFGLPILSQILTFGDKRSPKTAR 92

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  E I    +   +   +I G +    R K ++R+  G   ++I T 
Sbjct: 93  ALILVPTRELAVQIEEMISAVVKGAHLSTCLIVGGVS---RFKQIKRMGAG-VDVVIATP 148

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPR 433
               D ++           L+L   D     G    ++   K         L +AT    
Sbjct: 149 GRLMDLVREKFVDLSRSRFLVLDEADRMLDMGFINDVRRIAKLLCKEHQTALFSATMPKE 208

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              L +    +  KI   P G   ++       +P N    ++   +++++    +  + 
Sbjct: 209 IKELANGLLNEPVKIEVVPQGTTAVEITQKLYCVPKNEKRNIL--NRLLVNPDLISVIVF 266

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +   +      ++   ++A IHG  S   ++S + +F+ G+ K+L+AT 
Sbjct: 267 IRT--------KHGADAITRYLKNMGHAVATIHGNKSQNARQSALKAFREGSVKVLVATD 318

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +   GID+   S +I  +      + +H++ GR GR       I L+   
Sbjct: 319 IAARGIDIPGVSHVINYDLPEDAESYVHRI-GRTGRNGASGDAITLFDEE 367


>gi|134113286|ref|XP_774667.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257311|gb|EAL20020.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 559

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 137/375 (36%), Gaps = 45/375 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           +R + F+ P+  Q  A    L           +   + GSGKT+   +     + A    
Sbjct: 144 IRRMGFTAPSSIQCQAWPMALSGRD------LVAIAETGSGKTISFCLPAMVHINAQPLL 197

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G   +I+AP   LA Q      K+ Q+++I    I G  P+  + + L+R      
Sbjct: 198 APGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDLQR----GV 253

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLM 426
            I + T     D ++  K        L++   D     G + +++    Q       LL 
Sbjct: 254 EICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLLF 313

Query: 427 TATPIP--RTLVLTSLGDIDISKI----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           +AT     + L +  L D     I                V    ++  +++  L+ +  
Sbjct: 314 SATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEKISQ 373

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           E  K                R   +    L      ++AI HG     +++ V+  FK+G
Sbjct: 374 ENGKVLIFVAT--------KRVADDLTKFLRMDGWPALAI-HGDKQQAERDWVLAEFKSG 424

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +++AT V   G+DV D   +I  +  +     +H++ GR GR     +    +    
Sbjct: 425 RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRI-GRTGRAGRKGTSYTYFTMDN 483

Query: 601 SKNSYTRLSVLKNTE 615
           SK +   + +L+ ++
Sbjct: 484 SKAARELVQILRESK 498


>gi|134113284|ref|XP_774668.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257312|gb|EAL20021.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 546

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 137/375 (36%), Gaps = 45/375 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           +R + F+ P+  Q  A    L           +   + GSGKT+   +     + A    
Sbjct: 131 IRRMGFTAPSSIQCQAWPMALSGRD------LVAIAETGSGKTISFCLPAMVHINAQPLL 184

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G   +I+AP   LA Q      K+ Q+++I    I G  P+  + + L+R      
Sbjct: 185 APGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDLQR----GV 240

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLM 426
            I + T     D ++  K        L++   D     G + +++    Q       LL 
Sbjct: 241 EICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLLF 300

Query: 427 TATPIP--RTLVLTSLGDIDISKI----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           +AT     + L +  L D     I                V    ++  +++  L+ +  
Sbjct: 301 SATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEKISQ 360

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           E  K                R   +    L      ++AI HG     +++ V+  FK+G
Sbjct: 361 ENGKVLIFVAT--------KRVADDLTKFLRMDGWPALAI-HGDKQQAERDWVLAEFKSG 411

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +++AT V   G+DV D   +I  +  +     +H++ GR GR     +    +    
Sbjct: 412 RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRI-GRTGRAGRKGTSYTYFTMDN 470

Query: 601 SKNSYTRLSVLKNTE 615
           SK +   + +L+ ++
Sbjct: 471 SKAARELVQILRESK 485


>gi|312374635|gb|EFR22148.1| hypothetical protein AND_15703 [Anopheles darlingi]
          Length = 715

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 130/380 (34%), Gaps = 39/380 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---------GG 322
            P+  Q      +L        M+ I Q   G+GKTL  L+     +E          G 
Sbjct: 312 KPSPIQSQGWPVLLLGED----MIGIAQ--TGTGKTLAFLLPAFIHIEGQSTPRSERGGP 365

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++AP   LA Q  + + KY Q   I    + G      RR  +  +  G   III T
Sbjct: 366 NVLVLAPTRELALQIEKEVSKY-QFRDIKAVCLYGG---GDRRAQMNVVRSG-VEIIIAT 420

Query: 383 HALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP 432
                D +Q           L+L   D     G   Q R  L         ++ +AT   
Sbjct: 421 PGRLNDLVQEGVVNVSSITYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQTVMTSATWPD 480

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             R L  + + D     +           T  I     ++   R+   + + +    +  
Sbjct: 481 GVRRLAQSYMHDPIQVYVGTLDLAAVHTVTQHIECLDEEDKYHRIMKFVKQMEPKDKVII 540

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
              +K  ++  S     N +          IHG     D+E  ++  K GT ++LIAT V
Sbjct: 541 FCGKKTRADDLSSEFVLNDI------GCQSIHGNREQADREQALEDIKKGTVRILIATDV 594

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ D + ++  +        +H++ GR GR     + +          +   + +
Sbjct: 595 ASRGLDIEDITHVVNYDFPRNIEEYVHRV-GRTGRAGRTGTSLSFVTRSDWAVAAELIKI 653

Query: 611 LKNTEDGFLIAEEDLKQRKE 630
           L+  +        D+  R  
Sbjct: 654 LEEAQQEVPDEIRDMAARFA 673


>gi|149065925|gb|EDM15798.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_b [Rattus
           norvegicus]
          Length = 523

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 120/330 (36%), Gaps = 37/330 (11%)

Query: 310 ALIAMAAAVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
            L+     +          G   +++AP   LAQQ  +    Y + +++    I G  P+
Sbjct: 17  YLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPK 76

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + + LER       I I T     D ++  K        L+L   D     G + +++
Sbjct: 77  GPQIRDLER----GVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIR 132

Query: 414 LT--QKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRK--PIKTVIIPI 465
               Q       L+ +AT       L      D ++I     E  A      I  V +  
Sbjct: 133 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES 192

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
            +  ++I+ ++ +++E +    I            +   +               IHG  
Sbjct: 193 EKDHKLIQLMEEIMAEKENKTIIFV--------ETKRRCDDLTRRMRRDGWPAMCIHGDK 244

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S  +++ V++ F++G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R
Sbjct: 245 SQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI-GRTAR 303

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
                +    + P   K +   + VL+   
Sbjct: 304 STNKGTAYTFFTPGNLKQARELIKVLEEAN 333


>gi|68071941|ref|XP_677884.1| eukaryotic initiation factor [Plasmodium berghei strain ANKA]
 gi|56498165|emb|CAH98223.1| eukaryotic initiation factor, putative [Plasmodium berghei]
          Length = 390

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 125/344 (36%), Gaps = 37/344 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           P+  Q+  IK IL           ILQ   G+GKT V  +     V       Q +I++P
Sbjct: 40  PSAIQQRGIKPILNGRDV------ILQSQSGTGKTCVFAVGALNCVNRNLNETQIIILSP 93

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q  +          + V    G    +   KAL    +   HII GT       
Sbjct: 94  TRELAEQTQKVCLALADYIHVTVYCCIGGKKLSDDIKAL----NNGVHIISGTPGRIYHM 149

Query: 390 IQY--------YKLILVIVDEQHRFGVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLTS 439
           +           +L++   DE    G ++++    +       ++L +AT     L +T+
Sbjct: 150 LNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIVLSSATLPHEVLEITN 209

Query: 440 LGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLK--VVLSEGKKAYWICPQIEEK 495
               +  KI  K      + IK   I I +     E L          +A   C      
Sbjct: 210 KFMHNPVKILVKRDELTLEGIKQFFISIEKEQWKYETLADLYESLTITQAVVFCNT---- 265

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +  V+      +    ++  +H  MS  +++ +M  F+    ++LI+T +   G+
Sbjct: 266 -----KLKVDWLAKKMQESNFTVCKMHAGMSQSERDDIMLKFRQCKYRVLISTDIWGRGL 320

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV + S+++  +  +     +H++ GR GR       I      
Sbjct: 321 DVHEVSLVVNYDLPNSRECYIHRI-GRSGRFGRKGVAINFVKND 363


>gi|330938172|gb|EGH41869.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 442

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 133/352 (37%), Gaps = 40/352 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + +PT  Q  AI  +L           +     G+GKT    + +   +   G  
Sbjct: 16  LEALGYQTPTPVQTQAIPPVLAGRD------LMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+++AP   LA Q +E I++Y ++  +      G +    +   L R      
Sbjct: 70  VAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRR----GV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLTQK--ATAPHVLLM 426
            +++ T     D     ++++ +L  +I+DE  R    G  + L+            LL 
Sbjct: 126 DVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLF 185

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKK 484
           +AT      +L +    D   I   P       +K  ++ +++  +      + +   KK
Sbjct: 186 SATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKA----DLFIHLMKK 241

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             W    +  K       +V+R   L  +       IHG      ++  +D FK+   K+
Sbjct: 242 HRWGQVLVFAKTRVGVDQLVDRLQGLGMNADG----IHGDKPQATRQRALDRFKSNEVKI 297

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           L+AT V   G+D+ D   ++  +        +H++ GR GR       I L 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGLTGEAISLV 348


>gi|116181632|ref|XP_001220665.1| hypothetical protein CHGG_01444 [Chaetomium globosum CBS 148.51]
 gi|118597484|sp|Q2HEB0|PRP28_CHAGB RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|88185741|gb|EAQ93209.1| hypothetical protein CHGG_01444 [Chaetomium globosum CBS 148.51]
          Length = 705

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 135/386 (34%), Gaps = 53/386 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----------EA 320
            PT  Q +AI    Q          I     GSGKT   L+ +   +             
Sbjct: 291 EPTPIQRAAIPIAQQ------ARDLIGVAVTGSGKTAAFLLPLLVYISELPPLTEFNKND 344

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+I+AP   L QQ     +K+       V  I G      +  AL       A II+
Sbjct: 345 GPYALILAPTRELVQQIETEARKFAGPLGFTVVSIVGGHSLEEQAFALRN----GAEIIV 400

Query: 381 GTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLK-------------------LTQ 416
            T     D ++     + +   +I+DE  R   Q   +                     +
Sbjct: 401 ATPGRLVDCLERRLLVFSQCCYIIMDEADRMIDQGFEEPLTKILDALPVANEKPDTEDAE 460

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
            +      L       +T++ T+     + KI +K   R  I T+      +D V +R++
Sbjct: 461 NSQLMSRYLGGKDRYRQTMMYTATMPPLVEKIAKKYLRRPAIVTIGNAGEAVDTVEQRVE 520

Query: 477 VVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            V  E K+   +   +   +         N +   E      + +  S   +HG  +   
Sbjct: 521 FVSGEDKRKRRLQEILNSGQFKPPVIVFVNIKRNCEMVAKDIKSWGYSTVTLHGSKTQEQ 580

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E+ + S +NG   +L+AT +   GIDV D S+++  N      A  H++ GR GR  + 
Sbjct: 581 REASLASVRNGQANILVATDLAGRGIDVADVSLVVNFNMPSSIEAYTHRI-GRTGRAGKS 639

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTE 615
              I       S   Y    ++  + 
Sbjct: 640 GVAITFLGNEDSDVMYDLKQIISKSS 665


>gi|114564231|ref|YP_751745.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335524|gb|ABI72906.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 433

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 130/378 (34%), Gaps = 27/378 (7%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 +   +I + I      S T  Q+ AI  I +          +     G+GKT  
Sbjct: 1   MKFESFSFAPEILRAIAECGYQSMTPIQQQAIPAIRRGEDV------LASAQTGTGKTAA 54

Query: 310 ALIAMAAAVEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQ 361
             + +   +            + +I+ P   LA Q  + I  Y+++  + V  I G +  
Sbjct: 55  FALPILQRMCDNPKETMPSNTRTLILTPTRELAAQVADNISAYSKHLNLTVLTIYGGVKI 114

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             + + L+R     A +I+ T     + I    L L  V E        R+     +   
Sbjct: 115 DTQSQKLKR----GADVIVATPGRLLEHIVACNLSLSNV-EFLVLDEADRMLDMGFSADI 169

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             +L       + ++ ++    ++ K+      +  + T +   N   + + ++   + +
Sbjct: 170 KKILQAVNKKRQNMLFSATFSSEVKKLANDMLEKPKVIT-VDKQNTTADTVSQVVYPVEQ 228

Query: 482 GKKAYWICPQIEEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
            +K   I   I  K       F +  +  + L +          ++HG  +   +   + 
Sbjct: 229 RRKRELISELIGTKNWQQVLVFTATRDAADKLVKELNLDGIPSGVVHGEKAQGSRRRALR 288

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            F  G  ++L+AT V   G+D+ +   ++  +        +H++ GR GR  +    I  
Sbjct: 289 EFVEGKIRVLVATEVAARGLDIKNLEYVVNYDLPFLAEDYVHRI-GRTGRAGKTGVAISF 347

Query: 596 YHPPLSKNSYTRLSVLKN 613
                 +       ++  
Sbjct: 348 VSREEERTLADIEKLIGQ 365


>gi|254569806|ref|XP_002492013.1| RNA helicase in the DEAD-box family, involved in RNA isomerization
           at the 5' splice site [Pichia pastoris GS115]
 gi|238031810|emb|CAY69733.1| RNA helicase in the DEAD-box family, involved in RNA isomerization
           at the 5' splice site [Pichia pastoris GS115]
 gi|328351494|emb|CCA37893.1| ATP-dependent RNA helicase DDX23/PRP28 [Pichia pastoris CBS 7435]
          Length = 555

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 145/396 (36%), Gaps = 39/396 (9%)

Query: 265 ILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA------A 317
           I+ ++ F  PT  Q ++I   L           I     GSGKTL  +I           
Sbjct: 170 IVHSLGFDEPTPIQRASIPLALASRD------LIGIAKTGSGKTLAYIIPALNYLLQLPH 223

Query: 318 VEAG---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           +E+G    Q +I+ P   LA Q  +  KK+T    + +  + G         ++ R    
Sbjct: 224 LESGDQIPQVLILVPTRELALQVEKEFKKFTVKLDLNIISLIGGHSIEENVNSISRGCE- 282

Query: 375 QAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
              I++ T     D  +           ++L   D     G + ++    K         
Sbjct: 283 ---IVVATPGRLLDCYERKMISLAECYYVVLDEADRMIDMGFEVQVLKILKLLPTDQNRF 339

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           T+ P   T + T+     I KIT+    +    TV      +D V + ++   +E  K  
Sbjct: 340 TSRP-RNTFMFTATMSTAIQKITKNYLNQPGTLTVGELGTVVDTVTQEVRYFPNENAKLN 398

Query: 487 WICPQIEEKKESN--FRSVVERFNSLHEHFTSSIA----IIHGRMSDIDKESVMDSFKNG 540
            +   +   +     F +  +    L    + + A    +IHG  +   +E  + + ++G
Sbjct: 399 HLFSILPSFRPPIIIFVNYKKTCEFLQNQLSKNTALSSTVIHGSKNQDQRELAIQNLRSG 458

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +LIAT +   GID+ + S+++     +   +  H++ GR GR       I    P  
Sbjct: 459 KIDVLIATDLAGRGIDIPNVSLVVNFQMANGLDSYTHRI-GRTGRAGNRGYSITYLGPED 517

Query: 601 SKNSYTRLSVLKNTEDGF--LIAEEDL-KQRKEGEI 633
           S+       +L  +       + + D+ ++R    I
Sbjct: 518 SEIFSEFRKLLVKSGSKIPAELRQHDMNEKRNMRNI 553


>gi|289208213|ref|YP_003460279.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
 gi|288943844|gb|ADC71543.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 441

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/401 (18%), Positives = 141/401 (35%), Gaps = 47/401 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
           +PT  Q  AI ++L+          +     G+GKT    + +   +  G          
Sbjct: 27  TPTPIQAQAIPEVLKG------GDLLAAAQTGTGKTAGFTLPILQRLTTGQTPERKPGRP 80

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q ++ ++ Y ++  +    I G +    + KAL     G   I++ T
Sbjct: 81  RALILTPTRELAAQVHDSVRTYGRHLSLKSMTIFGGVNMNPQIKALR----GPMDIVVAT 136

Query: 383 HALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      I    + ++++DE  R      ++           L+   P  R  ++
Sbjct: 137 PGRLLDHAGQKTIDLSGVEILVLDEADRMLDMGFIRDI-------RRLIGLMPKQRQNLM 189

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            S       +        KP +  + P N   E +++   ++   +K   +   I     
Sbjct: 190 FSATFSGEIRTLASSLLNKPAEVDVAPRNTAAETVQQTVHLVESSRKRELLSHLIRSNDW 249

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +    R              IHG  S   +   +  FK G   +L+AT + 
Sbjct: 250 GQVLVFTRTKHGANRLAQKLTQDGVPSEAIHGNKSQAARTKALKQFKTGAVPVLVATDIA 309

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     ++     +     +H++ GR GR   + + + L      K       ++
Sbjct: 310 ARGLDIDQLPQVVNFELPNVPEDYVHRI-GRTGRAGSVGAALSLVDGEEMKLLKGIERLI 368

Query: 612 KN-----TEDGF---LIAEED-LKQRKEGEILGIKQSGMPK 643
           +        DGF     A  D   QR+ G+  G  ++G P+
Sbjct: 369 QRPIERIETDGFATPKPAANDGNGQRRGGKPGGGARNGKPR 409


>gi|8216985|emb|CAB92442.1| DEAD-box protein [Homo sapiens]
 gi|12053019|emb|CAB66685.1| hypothetical protein [Homo sapiens]
 gi|119569155|gb|EAW48770.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo sapiens]
          Length = 648

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 128/365 (35%), Gaps = 39/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQ--- 323
            PT  Q  A   +LQ +        I     G+GKTL  L+     +       G +   
Sbjct: 264 KPTPIQSQAWPIVLQGID------LIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRP 317

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++ P   LA Q      KY+    +    + G   +  + + L++       III T
Sbjct: 318 GMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIEELKK----GVDIIIAT 372

Query: 383 HALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      +    +  +++DE  +           K      +L+   P  +T++ 
Sbjct: 373 PGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMK------ILLDVRPDRQTVMT 426

Query: 438 TSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           ++     + ++ +       I  V    ++ ++ + + I              ++     
Sbjct: 427 SATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSS 486

Query: 494 EKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             K   F S     + L         S+  +HG     D+E  +++FK G  ++LIAT +
Sbjct: 487 TDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDL 546

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D + +   +        +H++ GR GR       I        + +   +++
Sbjct: 547 ASRGLDVHDVTHVYNFDFPRNIEEYVHRI-GRTGRAGRTGVSITTLTRNDWRVASELINI 605

Query: 611 LKNTE 615
           L+   
Sbjct: 606 LERAN 610


>gi|312212571|emb|CBX92654.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1194

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 132/372 (35%), Gaps = 45/372 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q  AI               I     GSGKTL   I M   +          G   
Sbjct: 562 PTSIQAQAIPIAESGRD------LIGVAKTGSGKTLAFGIPMIRHILDQRPLKGSDGPIG 615

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+AP   L+ Q    +K +   + I ++   G  P + +   ++R   G  HI+  T  
Sbjct: 616 LILAPTRELSLQIVSELKPFLSASNITIKCAYGGQPISDQIAMIKR---GGIHILCATAG 672

Query: 385 LFQDSIQ--------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
              D +Q        + ++  V++DE  R           K      +L T  P  +T++
Sbjct: 673 RLIDLLQSNSGRVLNFKRITYVVLDEADRMFDMGFEPQVMK------ILATIRPDRQTIL 726

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW--------I 488
            ++     ++ +  K   +     +        E+ + ++ V    +K           +
Sbjct: 727 FSATFPKSMASLARKALNKPAEVIIGGRSKVAPEITQIIEFVPPSYEKKIAKLLLHLGQV 786

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTS----SIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             + E  +   F    E    L          S+  IHG     D+   ++ FK G   +
Sbjct: 787 FSENENSQVLIFTERQETAEDLLSKLFKVSYLSVNTIHGAKDQTDRNEALNDFKQGVLSI 846

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPLSKN 603
           LIAT+V   G+DV   +++   +        +H+  GR GR     + I L   P   + 
Sbjct: 847 LIATSVAARGLDVPGLALVFNFDCPTHLEDYVHR-CGRTGRAGNKGTAITLIEDPGQERF 905

Query: 604 SYTRLSVLKNTE 615
           +   +  LK ++
Sbjct: 906 AVHVVKALKESD 917


>gi|110835269|ref|YP_694128.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110648380|emb|CAL17856.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 450

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 148/380 (38%), Gaps = 33/380 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------GGQAV 325
           +PT  Q +AI   L+    +      +    GSGKT   L+ M   +          +A+
Sbjct: 24  TPTPVQTAAIPAALEGRDLR------VVARTGSGKTAAFLLPMLHQLLQYSRPRTDTRAL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + ++   + T I  E++TG      +   + +       I+IGT   
Sbjct: 78  ILLPTRELAQQTLKQVEALGRYTFIKAELLTGGEDFKVQAAKMRK----NPEILIGTPGR 133

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             + +    L+L  + E        R+           L     P  +TL+ ++    + 
Sbjct: 134 LIEHLDAGNLLLQDL-EMLVLDESDRMLDMGFNDDVLRLAAECRPERQTLLFSATTGGNA 192

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKV----VLSEGKKAYWICPQIEEKKESNFR 501
            +       R P   V+  +  ++E + +  +    V  + +   W+       K   F 
Sbjct: 193 MENMISSVLRDPRSLVLDSVRDLNESVSQQIITADDVKHKERLVQWLLANETYDKAVVFT 252

Query: 502 SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
           +  E+ + L     +S   + ++HG     D++  MD  K G  K+L+AT V   GI V 
Sbjct: 253 NTREQADRLCGVLVASNLKVFVLHGEKDQKDRKLAMDRLKTGAVKVLVATDVAARGIHVD 312

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
           +  ++I  +    G   +H++ GR GR G E ++  L+     +  +  +  + +N E  
Sbjct: 313 NLDLVINFDMPRSGDEYVHRI-GRTGRVGGEGTAISLIAAHEWNLMASIQRYLRQNFEYR 371

Query: 618 FLIAEEDLKQRKEGEILGIK 637
            + A         G  LG K
Sbjct: 372 LVEALR-------GNFLGPK 384


>gi|171691382|ref|XP_001910616.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945639|emb|CAP71752.1| unnamed protein product [Podospora anserina S mat+]
          Length = 490

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 122/350 (34%), Gaps = 37/350 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
              + +  PT  Q+ AI   LQD         I   + GSGKT    + +  A+    Q 
Sbjct: 77  CDRLGYKQPTAIQQEAIPLALQDRD------IIGIAETGSGKTAAFALPILQALLDKPQP 130

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+++AP   LA Q  +  +       +   ++ G +    +  AL +    + H+++ 
Sbjct: 131 LFALVLAPTRELAAQIAQSFEALGSLINLRCALLLGGLDMVQQAIALGK----KPHVVVA 186

Query: 382 THALFQDSIQ------YYKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATP 430
           T     D ++         L   ++DE  R     FG      L          L +AT 
Sbjct: 187 TPGRLLDHLEKTKGFSLRNLRYCVMDEADRLLDMDFGPILEKILKFLPRERRTFLFSATM 246

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +   L      D  K+    +  + + T++                + +     ++C 
Sbjct: 247 SSKVESLQRASLRDPLKVNVSTSKYQTVSTLVSNY--------LFIPHIHKDTYFIYLCN 298

Query: 491 QIEEKKESNFRSV---VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +   K    F       +R   L          +HG +S   +   +  F+ GT  +L+A
Sbjct: 299 EFAGKTMIVFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALSKFRAGTRNILVA 358

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           T V   G+D+ +   +I  +        +H++ GR  R  +    + +  
Sbjct: 359 TDVAARGLDIPNVDCVINYDLPQDSKTYIHRV-GRTARAGKSGHALSIVT 407


>gi|91783626|ref|YP_558832.1| putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans
           LB400]
 gi|91687580|gb|ABE30780.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans
           LB400]
          Length = 523

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/376 (17%), Positives = 132/376 (35%), Gaps = 43/376 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L           +     G+GKT    + +   +   G        +
Sbjct: 65  TPTPVQVKAIPAVLGGRDV------MAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRAR 118

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +    Y +   +      G +    +   L +       +++ T 
Sbjct: 119 VLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSINPQMMKLRK----GVDVLVATP 174

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++Q  ++  +++DE  R        L          +  A P+ R  +L 
Sbjct: 175 GRLLDLNRQNAVQLDQVQTLVLDEADRM-------LDLGFARELNAVFAALPVRRQTLLF 227

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +       R P+   + P N     I +  V + +  K       +      
Sbjct: 228 SATFTDDIRAMAAGILRDPVNISVSPPNATASKIRQWVVTVDKKNKPDLFMHLVAGNNWR 287

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +       R+ V+   ++ +    ++  IHG      +   ++ FK G  ++L+AT V  
Sbjct: 288 HALVFVKTRNGVDYLAAMLDAAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAA 347

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ D  ++I  +        +H++ GR GR       + L     +       ++++
Sbjct: 348 RGLDIDDLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALIR 406

Query: 613 NT-----EDGFLIAEE 623
            T     E GF  AE 
Sbjct: 407 QTLRREEEPGFE-AEH 421


>gi|254700936|ref|ZP_05162764.1| DEAD-box ATP dependent DNA helicase [Brucella suis bv. 5 str. 513]
 gi|261751452|ref|ZP_05995161.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261741205|gb|EEY29131.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
          Length = 626

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 148/365 (40%), Gaps = 46/365 (12%)

Query: 272 SPTKSQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGG 322
           + T  Q + +  + L           ++    GSGKT+   +AMA  +        +AG 
Sbjct: 22  TLTAVQNAVLAPETLAS-------DLLVSAQTGSGKTVAFGLAMANTILEDELRFGDAGA 74

Query: 323 Q-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LA Q    ++    +T   +    G M     R+ALER     +HI++G
Sbjct: 75  PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GSHIVVG 130

Query: 382 THALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D I        Q   ++L   DE    G ++ L+           L  A    R
Sbjct: 131 TPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFI---------LGEAPEDRR 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I+++ ++        TV    ++  + I+ + + +   ++ + I   + 
Sbjct: 182 TLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHAD-IDYVAMPVPPHERDHAIINTLL 240

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                N       R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +        LH+  GR GR     +C+L+      +++   
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGTCVLVVPFSRRRSAERL 359

Query: 608 LSVLK 612
           L + K
Sbjct: 360 LHMAK 364


>gi|254690433|ref|ZP_05153687.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus bv. 6
           str. 870]
 gi|256258685|ref|ZP_05464221.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus bv. 9
           str. C68]
 gi|260755981|ref|ZP_05868329.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260885002|ref|ZP_05896616.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|297247521|ref|ZP_06931239.1| ATP-dependent RNA helicase DeaD [Brucella abortus bv. 5 str. B3196]
 gi|260676089|gb|EEX62910.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260874530|gb|EEX81599.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|297174690|gb|EFH34037.1| ATP-dependent RNA helicase DeaD [Brucella abortus bv. 5 str. B3196]
          Length = 626

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 148/365 (40%), Gaps = 46/365 (12%)

Query: 272 SPTKSQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGG 322
           + T  Q + +  + L           ++    GSGKT+   +AMA  +        +AG 
Sbjct: 22  TLTAVQNAVLAPETLAS-------DLLVSAQTGSGKTVAFGLAMANTILEDELRFGDAGA 74

Query: 323 Q-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LA Q    ++    +T   +    G M     R+ALER     +HI++G
Sbjct: 75  PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GSHIVVG 130

Query: 382 THALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D I        Q   ++L   DE    G ++ L+           L  A    R
Sbjct: 131 TPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFI---------LGEAPEDRR 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I+++ ++        TV    ++  + I+ + + +   ++ + I   + 
Sbjct: 182 TLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHAD-IDYVAMPVPPHERDHAIINTLL 240

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                N       R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +        LH+  GR GR     +C+L+      +++   
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGTCVLVVPFSRRRSAERL 359

Query: 608 LSVLK 612
           L + K
Sbjct: 360 LHMAK 364


>gi|17988107|ref|NP_540741.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str.
           16M]
 gi|256045915|ref|ZP_05448789.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260563201|ref|ZP_05833687.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|265992328|ref|ZP_06104885.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|17983860|gb|AAL53005.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str.
           16M]
 gi|260153217|gb|EEW88309.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|263003394|gb|EEZ15687.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
          Length = 626

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 148/365 (40%), Gaps = 46/365 (12%)

Query: 272 SPTKSQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGG 322
           + T  Q + +  + L           ++    GSGKT+   +AMA  +        +AG 
Sbjct: 22  TLTAVQNAVLAPETLAS-------DLLVSAQTGSGKTVAFGLAMANTILEDELRFGDAGA 74

Query: 323 Q-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LA Q    ++    +T   +    G M     R+ALER     +HI++G
Sbjct: 75  PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GSHIVVG 130

Query: 382 THALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D I        Q   ++L   DE    G ++ L+           L  A    R
Sbjct: 131 TPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFI---------LGEAPEDRR 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I+++ ++        TV    ++  + I+ + + +   ++ + I   + 
Sbjct: 182 TLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHAD-IDYVAMPVPPHERDHAIINTLL 240

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                N       R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +        LH+  GR GR     +C+L+      +++   
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGTCVLVVPFSRRRSAERL 359

Query: 608 LSVLK 612
           L + K
Sbjct: 360 LHMAK 364


>gi|15616977|ref|NP_240190.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681730|ref|YP_002468116.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682285|ref|YP_002468669.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471430|ref|ZP_05635429.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11386733|sp|P57453|DEAD_BUCAI RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|25403610|pir||D84973 ATP-dependent RNA helicase deaD [imported] - Buchnera sp.  (strain
           APS)
 gi|10039042|dbj|BAB13076.1| ATP-dependent RNA helicase deaD [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219622018|gb|ACL30174.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624573|gb|ACL30728.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086109|gb|ADP66191.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086682|gb|ADP66763.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087268|gb|ADP67348.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 601

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/360 (18%), Positives = 129/360 (35%), Gaps = 38/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q S I  +L+          +     GSGKT    + +   +       Q +++A
Sbjct: 28  KPSPIQASCIPLLLEGRDV------LGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E    +++    I V  + G      R +   R       I++GT     
Sbjct: 82  PTRELAVQVAEAFSDFSKYMIGIHVLPLYGG----QRYELQLRALRQGPQIVVGTPGRLL 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++         + L+L   DE  R G  + +           ++       +T + ++
Sbjct: 138 DHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDV---------ETIMAQIPKEHQTALFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                I +I+++         +   I    ++ +   +V      A     + E+     
Sbjct: 189 TMPEAIRRISKRFMRNPKEIKIQSNITTRPDIKQSYWMVYGRKTDALIRFLEAEDFSATI 248

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                  + +E   +L  +  +S A+ +G M+   +E  ++  KNG   +LIAT V   G
Sbjct: 249 IFVRTKNATLEVSEALERNGYNSAAL-NGDMNQALREQTLERLKNGRLDILIATDVAARG 307

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S +I  +      + +H++ GR GR       +L       +        +K +
Sbjct: 308 LDVDRISFVINYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIERTMKQS 366


>gi|311087784|gb|ADP67863.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 601

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/360 (18%), Positives = 129/360 (35%), Gaps = 38/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q S I  +L+          +     GSGKT    + +   +       Q +++A
Sbjct: 28  KPSPIQASCIPLLLEGRDV------LGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E    +++    I V  + G      R +   R       I++GT     
Sbjct: 82  PTRELAVQVAEAFSDFSKYMIGIHVLPLYGG----QRYELQLRALRQGPQIVVGTPGRLL 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D ++         + L+L   DE  R G  + +           ++       +T + ++
Sbjct: 138 DHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDV---------ETIMAQIPKEHQTALFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE-- 497
                I +I+++         +   I    ++ +   +V      A     + E+     
Sbjct: 189 TMPEAIRRISKRFMRNPKEIKIQSNITTRPDIKQSYWMVYGRKTDALIRFLEAEDFSATI 248

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                  + +E   +L  +  +S A+ +G M+   +E  ++  KNG   +LIAT V   G
Sbjct: 249 IFVRTKNATLEVSEALERNGYNSAAL-NGDMNQALREQTLERLKNGRLDILIATDVAARG 307

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S +I  +      + +H++ GR GR       +L       +        +K +
Sbjct: 308 LDVDRISFVINYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIERTMKQS 366


>gi|157121045|ref|XP_001653747.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882993|gb|EAT47218.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 814

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 132/384 (34%), Gaps = 52/384 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA------------AAVE 319
            PT  Q  AI   LQ+         I   + GSGKTL  LI +                +
Sbjct: 408 EPTPIQRQAIPIGLQNRD------IIGIAETGSGKTLAFLIPLLTWIQSLPKIDRLETAD 461

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G  A+I+AP   LAQQ  E  +K+ Q   I   ++ G + +  +   L         I+
Sbjct: 462 QGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGLSREEQGFRLRLGCE----IV 517

Query: 380 IGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVL---------- 424
           I T     D ++   L+L       +DE  R          QK      +          
Sbjct: 518 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEA 577

Query: 425 ---------LMTATPIPRTLVLTSLGDIDISKITE---KPAGRKPIKTVIIPINRIDEVI 472
                      T     +T++ T+     + ++     +      I +V  P  R ++++
Sbjct: 578 EDASKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQIV 637

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKES--NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
             +       K    +   +E       N +   +      E    +   +HG      +
Sbjct: 638 HIMTENEKRKKLMEILSRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 697

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           E  + S KNG+  +L+AT V   GID+ D S++I  +         H++ GR GR  +  
Sbjct: 698 EYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRI-GRTGRAGKTG 756

Query: 591 SCILLYHPPLSKNSYTRLSVLKNT 614
             I       S   Y    ++  +
Sbjct: 757 CAISFCTKDDSHLFYDLKQIVVAS 780


>gi|330811885|ref|YP_004356347.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379993|gb|AEA71343.1| Putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 445

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/354 (18%), Positives = 132/354 (37%), Gaps = 44/354 (12%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + +PT  Q  A+  +L           +     G+GKT    + +   +   G  
Sbjct: 16  LETLGYQTPTPVQAQAMPAVLAGRD------LMAAAQTGTGKTAGFAVPLLQLLTTEGPK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+I+ P   LA+Q +E +++Y QN  +    + G +    +   L +      
Sbjct: 70  VAANSVRALILVPTRELAEQVHESVRQYAQNLPLSTYAVYGGVSINPQMMKLRK----GV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLTQKATAPHVLLMTA 428
            +++ T     D     ++++ +L  +++DE  R    G  + L               A
Sbjct: 126 DLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIY----------KA 175

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  R  +L S    D  ++        P+   + P N     +++  V + + +K    
Sbjct: 176 LPKKRQTLLFSATFSDAIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKRKPELF 235

Query: 489 CPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              + + K          R+ V+      +    +   IHG      ++  +D FK    
Sbjct: 236 VHLMRKNKWRQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKASEV 295

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           ++L+AT V   G+D+ D  +++  +        +H++ GR GR       I L 
Sbjct: 296 QILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRI-GRTGRAGSTGEAISLV 348


>gi|163746467|ref|ZP_02153825.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380352|gb|EDQ04763.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 438

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 127/362 (35%), Gaps = 43/362 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q  AI    Q M+ ++ M        G+GKT    + + A +            +
Sbjct: 24  DPTPIQRQAIP---QAMNGRDVMGL---AQTGTGKTAAFGVPLLAQMMELEGRPEPRSVR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LAQQ    ++ Y + TQI V ++ G      + K LER       ++I T 
Sbjct: 78  GLVLAPTRELAQQIAVNLRGYAEGTQIKVAMVVGGQSINTQIKRLER----GVDLLIATP 133

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +            L+L   D+    G    L+                   +T+
Sbjct: 134 GRLLDLLDRRAVKLDTTTFLVLDEADQMLDMGFIHDLRKISNLIPKE---------RQTM 184

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     +++I        PI+  + P  +  + + +    +++ +K   +   + + 
Sbjct: 185 LFSATMPKLMNEIANSYLN-SPIRIEVSPPGKAADKVTQEVHFIAKAEKTELLKELLAKH 243

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           K          +   E+            A IHG  S   ++  +  FK G   +L+AT 
Sbjct: 244 KGERALVFGRTKHGSEKLMKTLVKAGFDAASIHGNKSQGQRDRAIAGFKGGDITVLVATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D   +      +     +H++ GR  R  +  + +    P           
Sbjct: 304 VAARGLDIPDVKHVYNFELPNVPDNYVHRI-GRTARAGKDGAAVAFCAPDEMGELKAIQK 362

Query: 610 VL 611
            +
Sbjct: 363 TM 364


>gi|104779961|ref|YP_606459.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95108948|emb|CAK13644.1| putative ATP-dependent RNA helicase, DEAD box family (RhlE)
           [Pseudomonas entomophila L48]
          Length = 443

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 131/344 (38%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
           +PT  Q  AI  +L           +     G+GKT    + +   +            +
Sbjct: 23  TPTPVQAQAIPAVLAGRD------LMAAAQTGTGKTAGFALPVLQRLALEGEKVAANSVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA+Q +  +++Y +N  +    + G +    +   L R       +++ T 
Sbjct: 77  ALVLVPTRELAEQVHANVREYAENLPLSTYAVYGGVSINPQMMRLRR----GVDLLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     +I++ ++  +++DE  R        L          +  A P  R  +L 
Sbjct: 133 GRLLDLFRQNAIKFGQVQTLVLDEADRM-------LDLGFAEELQAVYAALPRKRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  ++    A   P+   + P N     +++  V + + +KA   C  + +++  
Sbjct: 186 SATFSDQIRMLAGLALNDPLSIEVSPRNAAASTVKQWLVPVDKKRKADLFCHLLRKQRWK 245

Query: 499 N---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F       + L E   +   +   IHG      ++  +DSFK    ++L+AT V  
Sbjct: 246 QVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            G+D+ D  +++  +        +H++ GR GR       I L 
Sbjct: 306 RGLDIDDLPLVVNLDLPIVAEDYVHRI-GRTGRAGNKGEAISLV 348


>gi|58039465|ref|YP_191429.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58001879|gb|AAW60773.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 432

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/365 (19%), Positives = 134/365 (36%), Gaps = 39/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            PT  Q  +I  +L+          +     G+GKT    + +   +        + G +
Sbjct: 29  KPTPIQAQSIPLLLEGRD------LLGLAQTGTGKTASFALPLLHRLAATPRPAPKNGAR 82

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   L  Q  +  + ++++  + V  I G + Q H+ KALE        II+   
Sbjct: 83  VLVLAPTRELVSQIADGFESFSRHQPVRVTTIFGGVSQVHQVKALEE----GVDIIVAAP 138

Query: 384 ALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPR 433
               D I        Q   L+L   D+    G  + ++          H +L +AT    
Sbjct: 139 GRLLDLIEQGLCDLSQLETLVLDEADQMLDMGFAKPIERIVATLPEDRHTVLFSATMPKS 198

Query: 434 T--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              LV + L +    +I    +    I   ++ +N  D+    L  + + G     +   
Sbjct: 199 IAALVESLLRNPAKVEIAPPSSTVDRIAQSVMFLNASDKKAALLAQLRTPGIGQAVVFTL 258

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +           +    L E   ++   +HG  S   +E  +++F+ G  ++L+AT + 
Sbjct: 259 QKNIA-------NDVCTFLTESGITA-EALHGNRSQGQRERALNAFREGDVQVLVATDIA 310

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV   + +I  +      + +H++ GR GR       I L         +     +
Sbjct: 311 ARGIDVDTVTHVINHDLPSLPESYVHRI-GRTGRAGRSGFAITLCDAEQRAWLHAVEREI 369

Query: 612 KNTED 616
             T D
Sbjct: 370 GRTLD 374


>gi|2500517|sp|Q40471|IF4A9_TOBAC RecName: Full=Eukaryotic initiation factor 4A-9; Short=eIF-4A-9;
           AltName: Full=ATP-dependent RNA helicase eIF4A-9
 gi|485951|emb|CAA55736.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYELLDCQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----SSGVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 172 MLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ +  +E L          Y      +   
Sbjct: 232 RKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVSINFVTSD 386


>gi|315127597|ref|YP_004069600.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913]
 gi|315016111|gb|ADT69449.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913]
          Length = 408

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/373 (18%), Positives = 132/373 (35%), Gaps = 26/373 (6%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ K+   I +    +PT  Q+ AI + LQ          +     G+GKT   LI  
Sbjct: 6   FDLDDKLLNAINKMGYETPTSIQQQAIPEALQGRD------ILASAPTGTGKTAAFLIPA 59

Query: 315 AAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              +    +        +IM P   LA Q +E  +   + TQ+ + ++TG +     ++ 
Sbjct: 60  IQYLMDFPRRDPGFARVLIMTPTRELAYQIHEQCELLAKQTQLKIGVVTGGINYGTHKEI 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
            E        I+I T     + ++        V E        R+           +   
Sbjct: 120 FENNN----DILIATPGRLMEYLETENFHAENV-EMLILDEADRMLDMGFRKEMLRICDE 174

Query: 428 ATPIPRTLVLTSLGDIDISKI-TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           A    +  + ++  + D  ++  E+      +           ++ + + +      K  
Sbjct: 175 AKNRRQCFLFSATLEGDSVELFAERILNDPALLEAESSRKEKAKIHQWVHLADDYRHKLE 234

Query: 487 WICPQI---EEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNG 540
            +   +   +  K   F    ER  +L    T+     A + G M    +   M++F +G
Sbjct: 235 LLVNTLNGPDVSKAIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSG 294

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+AT V   GIDV D S +I  +        +H++ GR GR  +    I L     
Sbjct: 295 KTRILVATDVAARGIDVADISHVINFDMPRTADVYVHRI-GRTGRAGKKGIAISLIEAHD 353

Query: 601 SKNSYTRLSVLKN 613
               Y     ++ 
Sbjct: 354 IGILYKVERYIEQ 366


>gi|261324240|ref|ZP_05963437.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261300220|gb|EEY03717.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
          Length = 537

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 148/365 (40%), Gaps = 46/365 (12%)

Query: 272 SPTKSQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGG 322
           + T  Q + +  + L           ++    GSGKT+   +AMA  +        +AG 
Sbjct: 22  TLTAVQNAVLAPETLAS-------DLLVSAQTGSGKTVAFGLAMANTILEDELRFGDAGA 74

Query: 323 Q-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LA Q    ++    +T   +    G M     R+ALER     +HI++G
Sbjct: 75  PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GSHIVVG 130

Query: 382 THALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D I        Q   ++L   DE    G ++ L+           L  A    R
Sbjct: 131 TPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFI---------LGEAPEDRR 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I+++ ++        TV    ++  + I+ + + +   ++ + I   + 
Sbjct: 182 TLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHAD-IDYVAMPVPPHERDHAIINTLL 240

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                N       R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +        LH+  GR GR     +C+L+      +++   
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGTCVLVVPFSRRRSAERL 359

Query: 608 LSVLK 612
           L + K
Sbjct: 360 LHMAK 364


>gi|261379789|ref|ZP_05984362.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           subflava NJ9703]
 gi|284797475|gb|EFC52822.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           subflava NJ9703]
          Length = 463

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 128/366 (34%), Gaps = 46/366 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q +AI   L           +     G+GKT   ++     ++    +        
Sbjct: 25  PTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYATSSTSPAMHP 78

Query: 325 ---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++ P   LA Q  + ++ Y +N  +   ++ G +    +   L         I++ 
Sbjct: 79  VRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTADLRAGCE----IVVA 134

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-- 429
           T     D ++           ++L   D     G     R  +         LL +AT  
Sbjct: 135 TVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATFS 194

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P  R L    +   ++ ++  +      ++  II ++ + +     ++++        + 
Sbjct: 195 PPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRNLLERLIVDLHMNQVIVF 254

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + ++  +   R +V R          +   IHG  S   +   +++FK GT ++L+AT 
Sbjct: 255 CKTKQSVDQVTRDLVRR--------NIAAQSIHGDKSQQSRLETLNAFKEGTLRVLVATD 306

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +   +I           +H++ GR GR       I L    + K       
Sbjct: 307 VAARGLDIAELPFVINYELPTQPEDYVHRI-GRTGRAGADGVAISL----MDKTEQKMFE 361

Query: 610 VLKNTE 615
            +K   
Sbjct: 362 SIKELT 367


>gi|222110403|ref|YP_002552667.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221729847|gb|ACM32667.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 578

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/373 (17%), Positives = 127/373 (34%), Gaps = 45/373 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q  AI  +L           +     G+GKT    + M   +  G           
Sbjct: 24  PTPIQAQAIPAVLAGHD------LLAGAQTGTGKTAAFTLPMLHRLAEGQAPRSQFGGKG 77

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+++ P   LA Q  E ++ Y +   +   +I G +    + + ++R       +++ 
Sbjct: 78  VRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQIERIKR----GVDVLVA 133

Query: 382 THALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D      +    + ++++DE  R      +   +K      +L       ++L+
Sbjct: 134 TPGRLLDLQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKK------VLALLPQSKQSLL 187

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    DI ++      + P    + P N   + I ++   +  GKK   +   I+E  
Sbjct: 188 FSATFSDDIRELANS-LLKNPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHIIQEHD 246

Query: 497 ESNFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            S                        S   +HG  S   +   ++ FK G  + L+AT +
Sbjct: 247 WSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQIRALVATDI 306

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GID+ D   ++     +     +H++ GR GR       + L               
Sbjct: 307 AARGIDIDDLPHVVNYEIPNVPEDYVHRI-GRTGRAGREGHAVSLVCMDEEGFMMEIERF 365

Query: 611 LK-----NTEDGF 618
            K        DGF
Sbjct: 366 TKQEIPVQVIDGF 378


>gi|154508882|ref|ZP_02044524.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798516|gb|EDN80936.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC
           17982]
          Length = 722

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/351 (21%), Positives = 136/351 (38%), Gaps = 44/351 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAP 329
           PT  Q +AI  +L+          +     G+GKT    + + A V+A     QA+++AP
Sbjct: 68  PTPIQAAAIPPLLE------LRDVVGIAQTGTGKTAAFGLPLLAIVDADERNVQALVLAP 121

Query: 330 IGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q  + I+ +   T  + V  + G  P   +  AL+R     A +++GT     D
Sbjct: 122 TRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGALKR----GAQVVVGTPGRVID 177

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVL--LMTATPIPRTLVLT 438
            I+   L L  V        DE  R G  + ++    +     L  L +AT       + 
Sbjct: 178 LIEKGALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTALFSATMPAAIEKVA 237

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
                D  K+         + T    ++ I +    +      G  +  +  + +  KE 
Sbjct: 238 REHLKDPVKVA--------VSTESSTVDTIHQTYAVVPYKHKIGALSRVLATRAQHIKEG 289

Query: 499 N-----------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        R+ VE  +          A I G ++  ++E +++  KNG+  +L+A
Sbjct: 290 QEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKNGSLDVLVA 349

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           T V   G+DV   S+++  +      A +H++ GR GR       +  + P
Sbjct: 350 TDVAARGLDVERISLVVNFDVPREPEAYVHRI-GRTGRAGREGRALTFFTP 399


>gi|121594947|ref|YP_986843.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120607027|gb|ABM42767.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
          Length = 577

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/373 (17%), Positives = 127/373 (34%), Gaps = 45/373 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q  AI  +L           +     G+GKT    + M   +  G           
Sbjct: 24  PTPIQAQAIPAVLAGHD------LLAGAQTGTGKTAAFTLPMLHRLAEGQAPRSQFGGKG 77

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+++ P   LA Q  E ++ Y +   +   +I G +    + + ++R       +++ 
Sbjct: 78  VRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQIERIKR----GVDVLVA 133

Query: 382 THALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D      +    + ++++DE  R      +   +K      +L       ++L+
Sbjct: 134 TPGRLLDLQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKK------VLALLPQSKQSLL 187

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    DI ++      + P    + P N   + I ++   +  GKK   +   I+E  
Sbjct: 188 FSATFSDDIRELANS-LLKNPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHIIQEHD 246

Query: 497 ESNFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            S                        S   +HG  S   +   ++ FK G  + L+AT +
Sbjct: 247 WSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQIRALVATDI 306

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GID+ D   ++     +     +H++ GR GR       + L               
Sbjct: 307 AARGIDIDDLPHVVNYEIPNVPEDYVHRI-GRTGRAGREGHAVSLVCMDEEGFMMEIERF 365

Query: 611 LK-----NTEDGF 618
            K        DGF
Sbjct: 366 TKQEIPVQVIDGF 378


>gi|255691877|ref|ZP_05415552.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
 gi|260622430|gb|EEX45301.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
          Length = 421

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 126/362 (34%), Gaps = 43/362 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE AI  IL+          I     G+GKT   L+ +   +  G         +IM
Sbjct: 25  TPIQEQAIPIILEGKD------LIAVAQTGTGKTAAFLLPVLNKLSEGNHPEDAINCIIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ ++    +    + G        +  + +  G A ++I T     
Sbjct: 79  SPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLTLG-ADVVIATPGRLI 137

Query: 388 DS-----IQYYKLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                  +   K+   I+DE  R             +         ++ +AT   +   L
Sbjct: 138 AHLSLGYVDLSKVSYFILDEADRMLDMGFYDDIMQIVKYLPKERQTVMFSATMPAKIQQL 197

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            +    + S+I              + +++  E I +   V  E +K   I     ++  
Sbjct: 198 ANTILNNPSEIK-------------LAVSKPAEKIIQAAYVCYENQKLGIIRSLFADEVP 244

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +  V+           ++  +H  +    +E+VM  FK G   +L+AT ++
Sbjct: 245 ERVIIFASSKIKVKEVAKALMAMKLNVGEMHSDLEQAQRETVMHEFKAGRVNILVATDIV 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ D  ++I  +  H     +H++ GR  R       +         N  +  + L
Sbjct: 305 ARGIDIDDIRLVINFDVPHDSEDYVHRI-GRTARANNDGVALTFVSEKEQSNFKSIENFL 363

Query: 612 KN 613
           + 
Sbjct: 364 EK 365


>gi|218700063|ref|YP_002407692.1| ATP-dependent RNA helicase DbpA [Escherichia coli IAI39]
 gi|218370049|emb|CAR17825.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           IAI39]
          Length = 457

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPS-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|302036818|ref|YP_003797140.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
 gi|190343232|gb|ACE75620.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
 gi|300604882|emb|CBK41215.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
          Length = 431

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 133/359 (37%), Gaps = 38/359 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIM 327
            PT  Q  AI   L           +     G+GKT   +I M   +    +   +A+I+
Sbjct: 29  EPTAIQAQAIPHALAGRDV------LGCAQTGTGKTAAFVIPMLERLSGTPKGQPRALIL 82

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA Q    I    ++ Q+    + G      + + L +    +  II+ T     
Sbjct: 83  APTRELAIQIQATIDTLGRDLQLFATTVVGGADMQAQVRGLRQ----RPDIIVATPGRLL 138

Query: 388 DSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D +            L+L   D     G  Q++     A              +TL+ ++
Sbjct: 139 DHMWNGTISLLAMSILVLDEADRMLDMGFAQQINQILDAMPEE---------RQTLLFSA 189

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
               D++++ +  + + P++ ++       + + +     +  +K   +   ++ + ++ 
Sbjct: 190 TMPNDLARLAQ-ASVKDPVRVMVTKSATTADGVTQAVHHTTHDRKNGLLMSLLQSESDTV 248

Query: 499 ----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +   +R  +L +     +A++HG  +   + + ++ F+ GT ++L+AT +   G
Sbjct: 249 LVFARTKHRADRLGNLLDSAGHRVAVLHGGRTLPQRRAALEGFRRGTYRVLVATDIAARG 308

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           IDV + + +I  +  +     +H++ GR  R                +       +L  
Sbjct: 309 IDVANIAHVINYDVPNCPEDYVHRI-GRTARMRTTGRATTFVTSEDQEQLRAIERLLGQ 366


>gi|170681328|ref|YP_001743833.1| ATP-dependent RNA helicase DbpA [Escherichia coli SMS-3-5]
 gi|170519046|gb|ACB17224.1| ATP-independent RNA helicase DbpA [Escherichia coli SMS-3-5]
          Length = 457

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 133/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+         K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETFSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|148559538|ref|YP_001258161.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|256368588|ref|YP_003106094.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|148370795|gb|ABQ60774.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
 gi|255998746|gb|ACU47145.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
          Length = 626

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 148/365 (40%), Gaps = 46/365 (12%)

Query: 272 SPTKSQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGG 322
           + T  Q + +  + L           ++    GSGKT+   +AMA  +        +AG 
Sbjct: 22  TLTAVQNAVLAPETLAS-------DLLVSAQTGSGKTVAFGLAMANTILEDELRFGDAGA 74

Query: 323 Q-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LA Q    ++    +T   +    G M     R+ALER     +HI++G
Sbjct: 75  PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GSHIVVG 130

Query: 382 THALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D I        Q   ++L   DE    G ++ L+           L  A    R
Sbjct: 131 TPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFI---------LGEAPEDRR 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I+++ ++        TV    ++  + I+ + + +   ++ + I   + 
Sbjct: 182 TLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHAD-IDYVAMPVPPHERDHAIINTLL 240

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                N       R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +        LH+  GR GR     +C+L+      +++   
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGTCVLVVPFSRRRSAERL 359

Query: 608 LSVLK 612
           L + K
Sbjct: 360 LHMAK 364


>gi|332523459|ref|ZP_08399711.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314723|gb|EGJ27708.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 538

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 127/341 (37%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +       QA+++AP 
Sbjct: 25  SPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIRTDENIIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   L L  V        DE    G        +++       LL +AT P P + + + 
Sbjct: 135 KRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLFSATMPAPIKQIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  +I  K      ++   + +   ++     +++  +  +   +  +       
Sbjct: 195 FMKNPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRLMDVDQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FK     +L+AT V   G+D+ 
Sbjct: 249 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           + + +   +      + +H++ GR GR  +    I    P 
Sbjct: 307 NVTHVYNYDITQDPESYVHRI-GRTGRAGKSGESITFVSPN 346


>gi|297620018|ref|YP_003708123.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           voltae A3]
 gi|297378995|gb|ADI37150.1| DEAD/DEAH box helicase domain protein [Methanococcus voltae A3]
          Length = 584

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 134/372 (36%), Gaps = 47/372 (12%)

Query: 270 PFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----EAGGQ 323
            F+  T+ QE AI  +L        +  + Q   G+GKTL   I +   +     E G +
Sbjct: 20  GFTEATQIQEKAIPIVL-----DTELDVVGQAQTGTGKTLAFGIPIIQKIQEKIEENGRK 74

Query: 324 ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                 A+I+ P   LA Q ++ I    +  ++ +  + G      +   L         
Sbjct: 75  NKKAVKAIILTPTRELALQVHDEIDSVNKGNKLRLCTVYGGQSIEKQINKLRN----GVD 130

Query: 378 IIIGTHALFQDSIQYYKLILVIVD--------EQHRFGVQQR--LKLTQKATAPHVLLMT 427
           I+IGT     D +    L L  +D        E    G        +++       LL +
Sbjct: 131 IVIGTPGRVIDHLGRRTLKLNEIDFLVLDEADEMLNLGFIDDVEEIMSKCKEDCRKLLFS 190

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSE--GKK 484
           AT     + L  L   +   I  K        T  I    +  +  E L+ ++ +  G  
Sbjct: 191 ATLPKSIMELVELHMGEYETIRVKSKALTTELTEQIYYEVKEHDKFELLRRIIDKEPGFY 250

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
               C    +  +   R   E ++S           +HG M+   +E  +  FK+    +
Sbjct: 251 GLVFCKTKADVDQLMRRLNDENYSS---------EALHGDMNQKQRELALSRFKSHKIDI 301

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           +IAT V   GID+ + + +I  +      A +H++ GR GR     + I    P   +  
Sbjct: 302 MIATDVAARGIDINELTHVINYDIPQNPEAYVHRI-GRTGRAGNKGTAITFVEP---REF 357

Query: 605 YTRLSVLKNTED 616
                ++K ++ 
Sbjct: 358 RRFKYIMKISKS 369


>gi|167036018|ref|YP_001671249.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166862506|gb|ABZ00914.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 626

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 132/371 (35%), Gaps = 43/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPAGHPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q ++  K Y ++  ++   I G +    + +A+ +       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNPQIQAIAK----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D      +    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ + +K     P +  + P N   E IE+    L    K   +   I 
Sbjct: 187 NLLFSATFSKDITDLADK-LLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +            +    R     E    + A IHG  S   +   +  FK  + ++L+A
Sbjct: 246 QGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANSVRVLVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I +  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVEEDYVHRI-GRTGRAGRSGEAISMVAPDEEKLLKSI 364

Query: 608 LSVLKN-TEDG 617
             V K   +DG
Sbjct: 365 ERVTKQRIQDG 375


>gi|39995599|ref|NP_951550.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|39982362|gb|AAR33823.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|298504618|gb|ADI83341.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
          Length = 450

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 127/338 (37%), Gaps = 27/338 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
            PT  Q +A+   L++      +  +     G+GKT   ++     + +       G + 
Sbjct: 23  EPTPVQAAAVPRALEN------VDLLATAQTGTGKTAAFVLPALQRLSSPPQGPGRGPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LAQQ  + ++ Y    ++    I G MP   + + L          I+ T  
Sbjct: 77  LVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLLSAP----VDFIVATPG 132

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D +    L L  + E        R+     +     +   +    +TL+ T+  D  
Sbjct: 133 RLVDLLDRRSLDLSRL-ELLVLDEADRMLDMGFSDDVDRIAAASPATRQTLLFTATMDSA 191

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE-GKKAYWICPQIEE---KKESNF 500
           ++++  +   R+P +  I       E IE+   V  +   K   +   I +   ++   F
Sbjct: 192 MARLAGR-LLREPERIDIAGTKTTHEHIEQRLHVADDLHHKNRLLRHLITDESLRRAIIF 250

Query: 501 RSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            +      +L     +   S A +HG M    +   + + K G  +LL+AT V   G+DV
Sbjct: 251 SATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLLVATDVAARGLDV 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
              S +I  +   F    +H++ GR GR       I  
Sbjct: 311 TGISHVINFDLPKFAEDYVHRI-GRTGRAGASGIAISF 347


>gi|66047524|ref|YP_237365.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|63258231|gb|AAY39327.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
          Length = 442

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 134/352 (38%), Gaps = 40/352 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + +PT  Q  AI  +L           +     G+GKT    + +   +   G  
Sbjct: 16  LEALGYQTPTPVQTQAIPPVLAGRD------LMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+++AP   LA Q +E I++Y ++  +      G +    +   L R      
Sbjct: 70  VAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRR----GV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLTQK--ATAPHVLLM 426
            +++ T     D     ++++ +L  +I+DE  R    G  + L+            LL 
Sbjct: 126 DVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLF 185

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKK 484
           +AT      +L +    D   I   P       +K  ++ +++  +      + +   KK
Sbjct: 186 SATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKA----DLFIHLMKK 241

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             W    +  K       +V+R  +L  +       IHG      ++  +D FK+   K+
Sbjct: 242 HRWGQVLVFAKTRVGVDQLVDRLQALGMNADG----IHGDKPQATRQRALDRFKSNEVKI 297

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           L+AT V   G+D+ D   ++  +        +H++ GR GR       I L 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGLTGEAISLV 348


>gi|294947990|ref|XP_002785561.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239899540|gb|EER17357.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 755

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/455 (15%), Positives = 143/455 (31%), Gaps = 66/455 (14%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVE 258
            P I     +   P+  K+F    P     +  E+          RK+ K  I    +V 
Sbjct: 219 LPEIDWQRILPKFPQINKEFYREHPVVTNRSELEVDVF-------RKKNKIHIVAGDDVA 271

Query: 259 GKIAQKILRNIP-------------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSG 305
             +      + P              SPT  Q       LQ          +   + GSG
Sbjct: 272 KPVTTFDEASFPSYLTKKLHISYPNGSPTPIQAQVWPVALQGRD------IVAIAETGSG 325

Query: 306 KTLVALIAMAAAVEAGGQA--------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
           KTL  L+     +              +++AP   LA Q  E +        + V  + G
Sbjct: 326 KTLAYLLPAIVHLNNQPPVTIPGEPIVLVLAPTRELASQIAEEVVVVVVVVALRVTYLFG 385

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRL 412
            + +  + + + R       +I+ T     D      +   ++   +VDE  R       
Sbjct: 386 GVKKREQVEQMNRDV---PDMIVATPGRLLDMMSDGGVCLRRVTFFVVDEADRM------ 436

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
            L         +     P  + ++L++    ++  ++ K     P+   +  I+   +  
Sbjct: 437 ILLGFWKQVKTISQQIRPDRQCIMLSATWPEEVRDVSLKLCREDPVHINVGDISDNIDDS 496

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           +          ++          K    +SV      L +    ++ I  G+    ++E 
Sbjct: 497 DPYNREKLRTARSVKQVLIFTSGK----KSVDNLVGCLRQIGWPAVGIHSGK-EQAEREW 551

Query: 533 VMDSFK------------NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR 580
           + D FK                 +L+AT ++  G+D V    +I  +        +H++ 
Sbjct: 552 IFDQFKGRLNTEDHSRASRAEAVILVATDIMARGMDFVSVRYVINFDFPESCEDYIHRI- 610

Query: 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           GR GR     +    +       +   + +L+ + 
Sbjct: 611 GRTGRAGHQGNAYSYFSENDFWVAREMIPLLRESN 645


>gi|256376393|ref|YP_003100053.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
 gi|255920696|gb|ACU36207.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
          Length = 561

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 90/421 (21%), Positives = 149/421 (35%), Gaps = 66/421 (15%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           L  + +  PT  Q  AI  + +          + Q   G+GKT    + +   +      
Sbjct: 25  LSGLGYEEPTPIQREAIVPLTEGRD------LLGQAATGTGKTAAFALPVLERLAQVEKR 78

Query: 321 --GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A+++ P   LA Q  E + +Y +     V  I G  P   + + LER       +
Sbjct: 79  GDAPFALVLVPTRELAVQVSEAVHRYGRELGARVLPIYGGQPIGRQLRVLER----GVDV 134

Query: 379 IIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTA 428
           ++ T     D +    L        +L   DE    G  + L   L +       +L +A
Sbjct: 135 VVATPGRAVDHLGRGTLNLEDLQVVVLDEADEMLDMGFAEDLDTILAETPKQRQTVLFSA 194

Query: 429 TPIPRTLVLTSLGDIDISKIT-----EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           T  PR   L      + ++IT      +P     ++ V   + R  +     +V+  E  
Sbjct: 195 TMPPRIDKLARQHLTEPARITINQERAEPGEAPRVRQVAYVVPRAHKPAALGRVLDVEAP 254

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
            A  +  +         R  V++              +HG +S   ++ VM   +NGT  
Sbjct: 255 TAAIVFCRT--------RDEVDQLTETLNGRGYRAESLHGGISQEQRDRVMARLRNGTAD 306

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           LL+AT V   G+DV   + ++  N      + +H++ GRVGR       I L  P     
Sbjct: 307 LLVATDVAARGLDVEQLTHVVNYNVPSAPESYVHRI-GRVGRAGREGVAITLAEPREHGM 365

Query: 604 SYTRLSVLKNTEDGFLIAEE------DLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             T   V K       I  E      DL+ R+                + +  LH+SLLE
Sbjct: 366 LKTIERVTKQ-----RITMEKVPTVADLRARR--------------LELTRAALHESLLE 406

Query: 658 I 658
            
Sbjct: 407 D 407


>gi|259909026|ref|YP_002649382.1| ATP-dependent RNA helicase RhlE [Erwinia pyrifoliae Ep1/96]
 gi|224964648|emb|CAX56162.1| Putative ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283479042|emb|CAY74958.1| putative ATP-dependent RNA helicase rhlE [Erwinia pyrifoliae DSM
           12163]
          Length = 471

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 135/374 (36%), Gaps = 45/374 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
            PT  Q  AI  +L           +     G+GKT    + +   + +           
Sbjct: 23  EPTPIQRQAIPVVLAGRD------LMASAQTGTGKTAGFTLPLLQLLSSHNPHPKGRRPV 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E ++ Y++   +   ++ G +    +   L     G   +++ T
Sbjct: 77  RALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMMKLR----GGVDVLVAT 132

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTAT--P 430
                D     ++   K+ ++++DE  R          R  L +       LL +AT   
Sbjct: 133 PGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSD 192

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +TL    L + +  ++  +    + +   +  +++  +      ++     +   +  
Sbjct: 193 EIKTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVDKKRKRELLSLLIGRGNWQQVLVFT 252

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           + +                L++   ++ AI HG  S   +   +  FK+G  ++L+AT +
Sbjct: 253 RTKHGANH-------LAEQLNKDGITAAAI-HGNKSQGARTRALSDFKDGKIRVLVATDI 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GID+ +   ++     +     +H++ GR GR   +   + L      K       V
Sbjct: 305 AARGIDIEELPHVVNYELPNVPEDYVHRI-GRTGRAAAVGEALSLVCVDEHKLLRDIERV 363

Query: 611 LKN-----TEDGFL 619
           LK        DGF 
Sbjct: 364 LKREIPRMAIDGFE 377


>gi|297521633|ref|ZP_06940019.1| ATP-dependent RNA helicase DbpA [Escherichia coli OP50]
          Length = 457

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|66363178|ref|XP_628555.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII
           helicase [Cryptosporidium parvum Iowa II]
 gi|46229820|gb|EAK90638.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII
           helicase [Cryptosporidium parvum Iowa II]
          Length = 396

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 122/345 (35%), Gaps = 38/345 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMA 328
           P+  Q  AI  I+Q          I+Q   G+GKT V  +                +I++
Sbjct: 45  PSAIQRRAIVPIIQGRDT------IIQSQSGTGKTCVFSVGALEICSKSKENVPMVLILS 98

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q  +          I      G        KAL    +    II GT      
Sbjct: 99  PTRELAEQSEKVCTSIGDYLDIRAHSCIGGKKLKDDIKAL----NSGVSIISGTPGRVLQ 154

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+           LI+   DE   +G + ++    K            P  +T+++++ 
Sbjct: 155 MIEQGYLSTKKIKLLIIDEADEMFDYGFKTQVYDIYKYLP---------PRIQTVLVSAT 205

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
              DI  + +K         V      +D++ +    V  E  K   +C   +       
Sbjct: 206 LPDDILVMAQKFMRNPLQILVPKEEVSLDKIRQYHVQVEEEKWKFETLCDLYDTLTVTQS 265

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N ++ VE  +        +++ +HG +  + +E ++  F+ G  ++LI T +   G
Sbjct: 266 IIFCNTKNKVEWLSKKMMENHFTVSFVHGDLPQVTREEILREFREGKTRVLITTDLWGRG 325

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           IDV   ++++  +        +H++ GR GR       I L    
Sbjct: 326 IDVQQVNLVVNYDLPINKELYIHRI-GRSGRFGRSGIAINLITKE 369


>gi|197337346|ref|YP_002157966.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197314598|gb|ACH64047.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 418

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/367 (19%), Positives = 131/367 (35%), Gaps = 34/367 (9%)

Query: 267 RNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
             + F   T  Q+ AI  +LQ          +     G+GKT    + +   +       
Sbjct: 17  AELGFKEATPVQKQAIPLVLQGHDV------LAGAQTGTGKTAAFGLPLIQRLIESPIER 70

Query: 323 -------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +++I+ P   LAQQ ++ +  YTQNT++ V +  G      +++ L     G 
Sbjct: 71  HEESKVVRSLILTPTRELAQQVFDSLVSYTQNTELKVVVAYGGTSINVQKENLL----GG 126

Query: 376 AHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           A I+I T     D +    + L    E        R+           +L       +TL
Sbjct: 127 ADILIATPGRLLDHLHIKTITLNQA-EYLVLDEADRMLDMGFIPDIKKILRKMPDERQTL 185

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             ++     + +I       KP +  + P N   + +E++   + + +K+  +   I  +
Sbjct: 186 FFSATFSKKVREIAY-YMLNKPKEVQVTPTNSTADTVEQMVYPVDKHRKSELLAYLIGSR 244

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +   +      +      A I+G  S   +   ++ FK G  + LIAT 
Sbjct: 245 NWQQVLVFTKTKQGSDELVKELKKDGIKAASINGDKSQGARLRALEEFKTGKVRALIATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I           +H++ GR GR       I L    +S +    L 
Sbjct: 305 VAARGLDIEQLECVINYELPFKAEDYVHRI-GRTGRAGHTGKAISL----MSMDEEYLLK 359

Query: 610 VLKNTED 616
            ++   D
Sbjct: 360 AIETLLD 366


>gi|150376621|ref|YP_001313217.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150031168|gb|ABR63284.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae
           WSM419]
          Length = 498

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 132/372 (35%), Gaps = 47/372 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q  AI  +LQ          I     G+GKT    + M   ++A G        +
Sbjct: 24  KPTPIQTQAIPLVLQGRD------LIGLAQTGTGKTAAFGLPMIEKLQADGKRPDPRNIR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   L  Q    +K + + T I V ++ G +    + + L R       I++ T 
Sbjct: 78  ALILAPTRELVNQIATNLKLFVKKTPIKVGVVVGGVSINKQTEQLAR----GVDILVATP 133

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D I            L+L   D+    G    L+   K    +          +TL
Sbjct: 134 GRLLDLISRKAVTLTQGRYLVLDEADQMLDLGFIHDLRKIAKLVPKN---------RQTL 184

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+++  +         V  P    D+V + +  V  +  K   +   +   
Sbjct: 185 LFSATMPKLIAELAGEYLTDPVKVEVTRPGKAADKVEQYVHFVPGKDLKTTILKQTLTAN 244

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +      S  +   E+     +      A IHG  S   +E  + +F++G  ++L+AT 
Sbjct: 245 PDGLSLVFSRTKHGAEKLMKHLDQVGFKAASIHGNKSQGQRERALKAFRDGEIRVLVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+   + +   +      A +H++ GR  R       I    P   +       
Sbjct: 305 VAARGIDIPGVTHVYNYDLPEVADAYVHRI-GRTARNGRDGIAIAFCAPDEIRLLRDIEK 363

Query: 610 VLKNTEDGFLIA 621
           ++     G  IA
Sbjct: 364 LM-----GIEIA 370


>gi|213408863|ref|XP_002175202.1| ATP-dependent RNA helicase dbp3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212003249|gb|EEB08909.1| ATP-dependent RNA helicase dbp3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 554

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/376 (19%), Positives = 135/376 (35%), Gaps = 54/376 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
            PT  Q ++   +L           +   + GSGKT+   I     +           + 
Sbjct: 162 QPTPIQAASWPYLLAGRDV------VGIAETGSGKTVAFGIPALRYLNQLPKEKHPSIRV 215

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           ++++P   LA Q YE ++       + V  + G  P+  + +A       +A +IIGT  
Sbjct: 216 LVVSPTRELAIQTYENMRDLLAPLGLNVVAVYGGAPKFEQARAAR-----EASVIIGTPG 270

Query: 385 LFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKAT-------APHVLLMTAT 429
              D I        +   L+L   D     G +Q ++    AT           +  +AT
Sbjct: 271 RLLDLINDGAVNCSKVGYLVLDEADRMLDTGFEQDIRNIMSATPNPLAGGQRQTVFFSAT 330

Query: 430 PIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI--------NRIDEVIERLKVVL 479
                R L  T L D     I           T I+ +         R++ ++ +    +
Sbjct: 331 WPESVRELASTFLKDPVKITIGSDELAASHNITQIVEVIDDPRQKEYRLEALLRKHLKEI 390

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +  K               ++    R  +        + I HG +S   +   +DSFK+
Sbjct: 391 GKNGKVLVFAL---------YKKEAARVENTLRRKFDVVGI-HGDLSQAARIQALDSFKS 440

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G C LL+AT V   G+D+    ++I           +H++ GR GR     + I L+ P 
Sbjct: 441 GRCNLLVATDVAARGLDIPQVQLVINLTFPLTIEDYIHRI-GRTGRANTKGTSITLFTPQ 499

Query: 600 LSKNSYTRLSVLKNTE 615
              ++   ++VL+   
Sbjct: 500 DKGHAGELINVLRQAN 515


>gi|189467630|ref|ZP_03016415.1| hypothetical protein BACINT_04020 [Bacteroides intestinalis DSM
           17393]
 gi|189435894|gb|EDV04879.1| hypothetical protein BACINT_04020 [Bacteroides intestinalis DSM
           17393]
          Length = 482

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/384 (17%), Positives = 131/384 (34%), Gaps = 40/384 (10%)

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
                 +N+   + + +L     +PT  QE AI + L           +     G+GKT 
Sbjct: 1   MMTFKQMNISEPVCRALLEKNYSTPTLIQEQAIPEALTGRD------LLGLAQTGTGKTA 54

Query: 309 VALIAMAAAVEAGG-----------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
              + +   + A             +A+I+ P   LA Q  E +  YT+ T +   +I G
Sbjct: 55  AFAVPIIEQLLAAPMPQRKGAPRSIRALILTPTRELAIQIDESLADYTRYTTLRHTVIFG 114

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRL 412
            + Q  +   L         I+  T     D      I+   +   ++DE  R      +
Sbjct: 115 GVKQKSQTDELRA----GTDILTATPGRLLDLMSQGFIRLDDVRHFVLDEADRMLDMGFI 170

Query: 413 KLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI 472
              +       LL    P  +TL  ++     I ++  K     P +  + P + + E+I
Sbjct: 171 HDVK------RLLPKLPPKKQTLFFSATMPDSIDRLA-KSLLHNPARVEVTPASSVVEII 223

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMS 526
            +    + + +K   +   +  +           +   +           +   IHG  S
Sbjct: 224 SQSVYRVEKPQKKELLAQLLLGEAGHQVLVFSRTKHGADNIARYLSRRGIACESIHGDKS 283

Query: 527 DIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG 586
              ++  + +FK G   ++IAT +   GID+    +++  +        +H++ GR GR 
Sbjct: 284 QNARQRALSNFKEGRSNVIIATDIAARGIDIKGLDLVLNFDLPDVPETYVHRI-GRTGRA 342

Query: 587 EEISSCILLYHPPLSKNSYTRLSV 610
                 I       +        +
Sbjct: 343 GCEGRAIAFCSSEEAPMLREIEKL 366


>gi|332028589|gb|EGI68626.1| Putative ATP-dependent RNA helicase DDX43 [Acromyrmex echinatior]
          Length = 660

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 122/365 (33%), Gaps = 39/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---------AGG 322
            P+  Q  A   +L           I     G+GKTL  L+     ++          G 
Sbjct: 273 KPSPIQCQAWPILLSGQD------LIGIAQTGTGKTLAFLLPALIHIDGQVTPRDKRTGP 326

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             ++MAP   LA Q  + + KY+ +  I    + G   +  +   + +       I+I T
Sbjct: 327 NVLVMAPTRELALQIEKEVGKYSYH-GIKAVCVYGGGNRKTQIDTVTK----GVQIVIAT 381

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP 432
                D +Q   L        IL   D     G   Q R  L         ++ +AT   
Sbjct: 382 PGRLNDLVQANVLDVSAVTYLILDEADRMLDMGFEPQIRKTLLGVRPNRQTVMTSATWPQ 441

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             R L  + + +     +           T  I +   DE  + +     E      +  
Sbjct: 442 GVRRLAQSYMKNPIQVFVGSLDLAAVHSVTQRIYMANEDEKTDMMHQFFQEMGPQDKVIV 501

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
              +K + +  S      ++          IHG     D+E  ++  K G  ++L+AT V
Sbjct: 502 FFGKKSKVDDVSSDLALTNI------DCQSIHGDRDQSDREQALEDLKTGAVQILLATDV 555

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GID+ D + ++  +        +H++ GR GR       I         ++   + +
Sbjct: 556 ASRGIDIEDITHVLNYDFPRDIEEYVHRV-GRTGRAGRTGESITFMTRQDWHHAKALIDI 614

Query: 611 LKNTE 615
           L+   
Sbjct: 615 LEEAN 619


>gi|321260432|ref|XP_003194936.1| ATP-dependent RNA helicase DBP2 (p68-like protein) [Cryptococcus
           gattii WM276]
 gi|317461408|gb|ADV23149.1| ATP-dependent RNA helicase DBP2 (p68-like protein), putative
           [Cryptococcus gattii WM276]
          Length = 537

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 138/375 (36%), Gaps = 45/375 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           +R + F+ P+  Q  A    L           +   + GSGKT+   +     + A    
Sbjct: 124 IRRMGFTAPSSIQCQAWPMALSGRDV------VAIAETGSGKTISFCLPAMVHINAQPLL 177

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G   +I+AP   LA Q      K+ Q+++I    I G  P+  + + L+R      
Sbjct: 178 APGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDLQR----GV 233

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLM 426
            I + T     D ++  K        L++   D     G + +++    Q       LL 
Sbjct: 234 EICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLLF 293

Query: 427 TATPIP--RTLVLTSLGDIDISKI----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           +AT     + L +  L D     I                V    ++  +++  L+ +  
Sbjct: 294 SATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEKISQ 353

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           E  K                R   +    L      ++AI HG     +++ V+  FK+G
Sbjct: 354 ENGKVLIFVAT--------KRVADDLTKFLRMDGWPALAI-HGDKQQAERDWVLAEFKSG 404

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +++AT V   G+DV D   +I  +  +     +H++ GR GR     +    +    
Sbjct: 405 RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRI-GRTGRAGRKGTSYTYFTMDN 463

Query: 601 SKNSYTRLSVLKNTE 615
           SK++   + +L+ ++
Sbjct: 464 SKSARELVQILRESK 478


>gi|300772029|ref|ZP_07081899.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760332|gb|EFK57158.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 450

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/367 (19%), Positives = 146/367 (39%), Gaps = 31/367 (8%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGG--QAVIMA 328
           PT+ Q+ AI  +L        ++ I Q   G+GKT   ++ M   ++   G   +A+I++
Sbjct: 26  PTEIQQKAITPVLAG----QDIMGIAQ--TGTGKTAAFVLPMLMKLKYAQGKDMRALILS 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I+ +++   +   ++ G +    + + LE+       II+ T   F D
Sbjct: 80  PTRELAMQIEEHIQLFSKYLDLRTVVLYGGLGPKTQIENLEK----GVDIIVATPGRFLD 135

Query: 389 -----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--RTLV 436
                 I    L  +++DE  +      +    +           LL +AT     R + 
Sbjct: 136 LYLEGHINVKSLKFLVMDEADKMMDMGFISKIHRILEVVPRKRQNLLFSATMSELVRKIA 195

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              L    + ++TE+    K ++  +  +      +  L+ +L + +  + +    + K 
Sbjct: 196 GDFLAFPTVIEVTEQATPAKTVQQAVYKVPNQKTKLNLLQHLLKDDESFHRLIVFCKTKT 255

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            ++            ++ T  + +IH       + + +++FK G  ++L+AT V   G+D
Sbjct: 256 VADNVFHFLE----RKYGTEQVRVIHANKGQNTRINSINAFKEGNIRILVATDVAARGLD 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V + S +I           +H++ GR GR       I   +P           +++ +  
Sbjct: 312 VSNVSHVINFEVPIVIEDYVHRI-GRTGRAFNEGDAITFSNPAEDYYVRKIEKLIRQSIP 370

Query: 617 GFLIAEE 623
              I EE
Sbjct: 371 VLEIPEE 377


>gi|218532791|ref|YP_002423607.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218525094|gb|ACK85679.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 568

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 133/376 (35%), Gaps = 38/376 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
            PT  Q++ +  +            ++    GSGKT+   +A+A  + +           
Sbjct: 21  EPTPVQQAVLDAV-------PERDLLVSAQTGSGKTVAFGLAIAGTLLSEDEALPPPGAP 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    +      T   +    G M      +ALE       HI++GT
Sbjct: 74  LALVIAPTRELALQVQRELTWLYAQTGARIVPCVGGMDPRREARALEA----GVHIVVGT 129

Query: 383 HALFQDSIQYYKLI--------LVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIP 432
               +D ++  +L+        L   DE    G ++ L+    +T      LL +AT   
Sbjct: 130 PGRLRDHMERGRLVTEGLRAVILDEADEMLDMGFREDLEFILASTPKDRRTLLFSATLPK 189

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
             + L      D  ++      R     V   +  +   +E   V +     A       
Sbjct: 190 AIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNILRYVDAPVAIVF- 248

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N R  V    +       S   + G +   ++ + + + ++G  ++ +AT V  
Sbjct: 249 -----CNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATDVAA 303

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+    ++I  +  H      H+  GR GR     + ++L  P   + +    ++ K
Sbjct: 304 RGIDLPGLDLVIHADLPHDAEVMQHR-SGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIAK 362

Query: 613 NTEDGFLIAEEDLKQR 628
            + D       D + R
Sbjct: 363 VSPDWSGPPNAD-EIR 377


>gi|157376984|ref|YP_001475584.1| ATP-dependent RNA helicase DbpA [Shewanella sediminis HAW-EB3]
 gi|157319358|gb|ABV38456.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 458

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 152/437 (34%), Gaps = 57/437 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
           S T  Q  ++  IL           I QG  GSGKT    + +   +       Q++++ 
Sbjct: 23  SMTPIQAQSLPAILNGEDV------IGQGKTGSGKTAAFGLGLLHKLNVKRFRIQSLVLC 76

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I+   +    I V  + G +P   +  +LE      AHII+GT     
Sbjct: 77  PTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEH----GAHIIVGTPGRII 132

Query: 388 DSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           D +   +L L  V     DE  R      L           ++       +TL+ ++   
Sbjct: 133 DHLSRERLSLEDVNTLVLDEADRMLEMGFLPDL------DYIMAQMPRERQTLLFSATFP 186

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE----- 497
             I KI E     +P+   +   +    + +    + S   +   +   + + +      
Sbjct: 187 KQIQKIAE-EIMYEPVMVKVTSTHDSSSIDQHFYQIDSNKDRQKALRLLLLQHRPESAVV 245

Query: 498 -SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +   +   +   +   S+  +HG +   D++  +  F N +  +++AT V   G+D
Sbjct: 246 FCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIMVATDVAARGLD 305

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN--T 614
           +    ++I           +H++ GR GR     +    Y              L +   
Sbjct: 306 IEALDMVINYEFAFDTEVHIHRI-GRTGRAGSKGAAFTFYTYDDDYKIKLLEEYLDHDIV 364

Query: 615 EDGF-----------LIAEEDLKQRK-------EGEILG--IKQSGMPKFLIAQPEL--H 652
            +G                  L+           G+ILG    + G+    + + ++   
Sbjct: 365 SEGLPPENLLDTLPTQPKMVTLQIDGGKKHKVRPGDILGALTGEDGIQGSEVGKIKITEF 424

Query: 653 DSLLEIARKDAKHILTQ 669
            S + + RK AK  L +
Sbjct: 425 RSYVAVDRKVAKRALHK 441


>gi|4126714|dbj|BAA36710.1| DEAD-Box Protein [Ciona intestinalis]
          Length = 669

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/371 (18%), Positives = 132/371 (35%), Gaps = 47/371 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAG---------- 321
           PT  Q+ +I  I  D         +     GSGKT   L+ +    VE+G          
Sbjct: 236 PTPVQKYSIPIINADRD------LMACAQTGSGKTAAFLLPVLTKLVESGVKSSEFSEKK 289

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             QA+I+ P   L  Q +   +K++++T I   ++ G     ++ +A+++       ++I
Sbjct: 290 TPQAIIIGPTRELVNQIFLEARKFSRSTIIHPVVVYGGTSVGYQIRAVQK----GCDVLI 345

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKL------TQKATAPHVLLM 426
            T     D I    + L  V        D     G +  ++         +    H L+ 
Sbjct: 346 ATPGRLMDFINRGLIGLENVRFIILDEADRMLDMGFESEIRKLVSLPGMPQKNNRHTLMF 405

Query: 427 TATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           +AT       L      +      +         +   +I +   D+  + L+++    +
Sbjct: 406 SATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWKDKRSKLLELIADVNE 465

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
                   +E K+ ++F         +          IHG     D+E  +  FK   C 
Sbjct: 466 TKSRTLVFVETKRGADF------LACVLCQEDFPTTSIHGDRLQQDREQALRDFKLAVCP 519

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT+V   G+D+     +I  +        +H++ GR GR   +      +      N
Sbjct: 520 ILVATSVAARGLDIPKVEHVINYDMPREIDEYVHRI-GRTGRCGNLGRATTFFDNKKDAN 578

Query: 604 -SYTRLSVLKN 613
            + + + +L  
Sbjct: 579 LARSLVKILSE 589


>gi|74096143|ref|NP_001027593.1| DEAD-Box Protein [Ciona intestinalis]
 gi|4126716|dbj|BAA36711.1| DEAD-Box Protein [Ciona intestinalis]
          Length = 659

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/371 (18%), Positives = 132/371 (35%), Gaps = 47/371 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAG---------- 321
           PT  Q+ +I  I  D         +     GSGKT   L+ +    VE+G          
Sbjct: 226 PTPVQKYSIPIINADRD------LMACAQTGSGKTAAFLLPVLTKLVESGVKSSEFSEKK 279

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             QA+I+ P   L  Q +   +K++++T I   ++ G     ++ +A+++       ++I
Sbjct: 280 TPQAIIIGPTRELVNQIFLEARKFSRSTIIHPVVVYGGTSVGYQIRAVQK----GCDVLI 335

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKL------TQKATAPHVLLM 426
            T     D I    + L  V        D     G +  ++         +    H L+ 
Sbjct: 336 ATPGRLMDFINRGLIGLENVRFIILDEADRMLDMGFESEIRKLVSLPGMPQKNNRHTLMF 395

Query: 427 TATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           +AT       L      +      +         +   +I +   D+  + L+++    +
Sbjct: 396 SATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWKDKRSKLLELIADVNE 455

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
                   +E K+ ++F         +          IHG     D+E  +  FK   C 
Sbjct: 456 TKSRTLVFVETKRGADF------LACVLCQEDFPTTSIHGDRLQQDREQALRDFKLAVCP 509

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT+V   G+D+     +I  +        +H++ GR GR   +      +      N
Sbjct: 510 ILVATSVAARGLDIPKVEHVINYDMPREIDEYVHRI-GRTGRCGNLGRATTFFDNKKDAN 568

Query: 604 -SYTRLSVLKN 613
            + + + +L  
Sbjct: 569 LARSLVKILSE 579


>gi|322703781|gb|EFY95385.1| ATP-dependent RNA helicase ded-1 [Metarhizium anisopliae ARSEF 23]
          Length = 665

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 60/374 (16%), Positives = 133/374 (35%), Gaps = 45/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------------- 318
           PT  Q+ +I  +   M  ++ M        GSGKT   L  + +                
Sbjct: 199 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQAFINGPSPVPANAAG 252

Query: 319 ------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                 +A   ++I+AP   L  Q Y+  +K+   + +   ++ G      + + +ER  
Sbjct: 253 QFGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIER-- 310

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMT 427
                +++ T     D I+  ++ L  +     DE  R          ++      +   
Sbjct: 311 --GCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPV 368

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           A    +TL+ ++    DI  +  +   +  +   +  +    E I +    + +  K   
Sbjct: 369 A--DRQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKVEFVEDIDKRSV 425

Query: 488 ICPQIEEKK------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           +   +              + + +  +    + +     IHG  +  ++E  ++ F+NG 
Sbjct: 426 LLDILHTHAGGLTLIFVETKRMADSLSDFLINQSFPATSIHGDRTQRERERALEFFRNGR 485

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
           C +L+AT V   G+D+ + + +I  +        +H++ GR GR          ++    
Sbjct: 486 CPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRI-GRTGRAGNTGIATAFFNRGNR 544

Query: 602 KNSYTRLSVLKNTE 615
                 + +LK   
Sbjct: 545 GIVRELMELLKEAN 558


>gi|298291272|ref|YP_003693211.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296927783|gb|ADH88592.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 619

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/382 (18%), Positives = 144/382 (37%), Gaps = 49/382 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA---------AVEAGGQ 323
           PT  Q      +L   +    +  ++    GSGKT+   +AMA          A     Q
Sbjct: 19  PTPVQL----AVLAPEASGRDL--LVSAQTGSGKTVAYGLAMAETLLGVSERFAAATVPQ 72

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LA Q           T   +    G M     ++ L +     AH+++GT 
Sbjct: 73  ALVVAPTRELALQVQREFAWLYAATGARIVSCVGGMDPRQEQRLLNQ----GAHVVVGTP 128

Query: 384 ALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
              +D ++  +L        +L   DE    G ++ L+    AT          P  R+L
Sbjct: 129 GRLRDHLERGRLDLSALRVAVLDEADEMLDLGFREDLEFILDATP---------PERRSL 179

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     I+ +  +   R  ++  +         IE   + ++  +  + +   +   
Sbjct: 180 LFSATMARGITTLARRY-QRDALRIEVASAEGGHADIEYRTMRVAPTEVEHAVVNVLRYY 238

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N R  V R +++ +    S   + G +S  ++   + + ++G  ++ +AT 
Sbjct: 239 DTPSAIVFCNTREAVRRMHAMLQERQFSAVALSGELSQNERNHALQALRDGRARVCVATD 298

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ +  ++I  +  +   +  H+  GR GR       +LL  P   + +   + 
Sbjct: 299 VAARGIDLPNLGLVIHADLPNDAESLQHR-SGRTGRAGRKGVSVLLVPPFRRRRTEDLMR 357

Query: 610 V--LKNTEDGFLIAEEDLKQRK 629
              +K +  G   +E     RK
Sbjct: 358 ALGIKPSWSGPPTSE---DIRK 376


>gi|262403250|ref|ZP_06079810.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
 gi|262350749|gb|EEY99882.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
          Length = 412

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/337 (19%), Positives = 130/337 (38%), Gaps = 30/337 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 22  QPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 75

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +       ++    + G + +  ++ AL         I++ T     D 
Sbjct: 76  TRELAMQVSEVLTHVGTPLELNTLCLCGGVDKTEQQNALAENPT----ILVATTGRLFDL 131

Query: 390 IQ----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            Q      ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 132 TQSGLSLNRVSTLVLDEADRL-------LDMGFWPQVQALASQTASVRQTVMCSATFSDD 184

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +     P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 185 LKLKAQQLMHAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 244

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S  ++E+ +  FKNG+ ++LIAT ++  GI +  
Sbjct: 245 AKENADSLTKKLNKAGVVATALHGDKSQTEREAALAEFKNGSTQVLIATDLLARGIHIEQ 304

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             ++I           +H++ GR  R  +    I L 
Sbjct: 305 LPVVINFELPMHAQTYVHRV-GRTARAGQQGIAISLV 340


>gi|238020287|ref|ZP_04600713.1| hypothetical protein GCWU000324_00164 [Kingella oralis ATCC 51147]
 gi|237867267|gb|EEP68273.1| hypothetical protein GCWU000324_00164 [Kingella oralis ATCC 51147]
          Length = 468

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 126/367 (34%), Gaps = 46/367 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +PT  Q +AI   L           +     G+GKT   ++     ++    A       
Sbjct: 24  TPTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYANASASPAMH 77

Query: 325 ----VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               +++ P   LA Q  +  + Y +N  +   ++ G +    +   L         I+I
Sbjct: 78  PVRMLVLTPTRELADQIDQNTQNYIKNMPLRHTVLFGGVNMNKQTAELRAGCE----IVI 133

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT- 429
            T     D ++           ++L   D     G     R  +         LL +AT 
Sbjct: 134 ATVGRLLDHVKQKNINLSKVEIVVLDEADRMLDMGFIDDIRTIMQMLPKPRQTLLFSATF 193

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  R L    +    I ++  +      ++  +I I+   +     ++++        +
Sbjct: 194 APAIRKLAQDFMNAPQIVEVAAQNTTNANVEEHVISIDSHRKRELLERLIVDLNMNQVIV 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + ++  +   R +V R          S   IHG  S   +  V++ FK+G  ++L+AT
Sbjct: 254 FCKTKQSADQVSRDLVRR--------GLSANAIHGDKSQQTRLDVLNQFKSGELRVLVAT 305

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   ++           +H++ GR GR       I L    + +      
Sbjct: 306 DVAARGLDIAELPFVVNYEMPTQAEDYVHRI-GRTGRAGADGVAISL----MDETEQKMY 360

Query: 609 SVLKNTE 615
             +K   
Sbjct: 361 EAIKALT 367


>gi|218193167|gb|EEC75594.1| hypothetical protein OsI_12293 [Oryza sativa Indica Group]
          Length = 404

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 130/369 (35%), Gaps = 33/369 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+ A+  I+           I Q   G+GKT +  +++   V       QA+I++
Sbjct: 53  KPSAIQQRAVLPIISGRDV------IAQAQSGTGKTSMISLSVCQIVNTAVREVQALILS 106

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +        I V    G        + LE       H++ GT     D
Sbjct: 107 PTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDIRKLEH----GVHVVSGTPGRVCD 162

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        IL   DE    G + ++            V L++AT     L +T
Sbjct: 163 MIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMT 222

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           S    D  +I  K      + IK   + + + +   + L          Y      +   
Sbjct: 223 SKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTL-------CDLYDTLTITQAVI 275

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   +++++M  F++G  ++LI T V   G+D
Sbjct: 276 FCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLD 335

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V   S++I  +  +     +H++ GR GR       I        +             D
Sbjct: 336 VQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQID 394

Query: 617 GFLIAEEDL 625
              +   DL
Sbjct: 395 EMPMNVADL 403


>gi|167035034|ref|YP_001670265.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166861522|gb|ABY99929.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 453

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/366 (19%), Positives = 138/366 (37%), Gaps = 42/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQA----V 325
            PT  Q +AI   LQ    +      +    GSGKT   ++ +   +    GG+     +
Sbjct: 35  EPTPVQAAAIPLALQGRDLR------VTAQTGSGKTAAFVLPLLNRLVDLKGGRVEIRSL 88

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + ++ ++Q T +   ++TG      +   L ++      ++IGT   
Sbjct: 89  ILLPTRELAQQTLKQVQLFSQFTYVKAGLVTGGEDFKEQAAMLRKV----PDVLIGTPGR 144

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATP---IP 432
             + +    L L  V        D     G  + ++    +       LL +AT      
Sbjct: 145 LLEQLNAGNLDLSHVKVLILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGGAAL 204

Query: 433 RTLVLTSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           R ++   L D +   +      A     + +    ++  E I +  +      KA     
Sbjct: 205 RDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLANETFDKAIIFTN 264

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     R++ +R             ++HG     D++  ++ FK G+ K+L+AT V
Sbjct: 265 T---------RAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDV 315

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRLS 609
              G+D+    ++I  +    G   +H++ GR GR G E  +  L+ H   +  S     
Sbjct: 316 AARGLDIDGLDLVINFDMPRSGDEYVHRV-GRTGRAGGEGLAISLITHNDWNLMSSIERY 374

Query: 610 VLKNTE 615
           + +  E
Sbjct: 375 LKQQFE 380


>gi|289623983|ref|ZP_06456937.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648770|ref|ZP_06480113.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868972|gb|EGH03681.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 442

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 131/351 (37%), Gaps = 38/351 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + +PT  Q  AI  +L           +     G+GKT    + +   +   G  
Sbjct: 16  LEALGYQTPTPVQTQAIPAVLAGRD------LMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+++AP   LA Q +E I++Y ++  +      G +    +   L +      
Sbjct: 70  VAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRK----GV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +++ T     D     ++++ +L  +I+DE  R        L          +    P 
Sbjct: 126 DVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRM-------LDLGFAEELRGIYAVLPK 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  ++        P+   + P N     +++  V + + +KA      
Sbjct: 179 QRQTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHL 238

Query: 492 IEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +++ +          R  V++     +    +   IHG      ++  +D FK+   K+L
Sbjct: 239 MKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKIL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +AT V   G+D+ D   ++  +        +H++ GR GR       I L 
Sbjct: 299 VATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGLTGEAISLV 348


>gi|288926741|ref|ZP_06420652.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17]
 gi|288336471|gb|EFC74846.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17]
          Length = 579

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 129/362 (35%), Gaps = 42/362 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL+          +     G+GKT   L+ + + ++ GG        VIM
Sbjct: 25  TPVQEKCIPEILKG------NDVLGVAQTGTGKTAAYLLPILSKLDDGGYPKDAINCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ +      +  +        +R     +     A ++I T     
Sbjct: 79  SPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQELKSLRLGADVVIATPGRLI 138

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVL 437
             I    +        +L   D     G  + +    K        ++ +AT   +   L
Sbjct: 139 SHISLGNVDMSKVSYFVLDEADRMLDMGFSEDILQIAKLLPNTCQTIMFSATMPAKIEEL 198

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
                 +  +I              + +++  E I++   V  E +K   I    +    
Sbjct: 199 AKTLLKNPVEIK-------------LAVSKPAEKIKQEAYVCYETQKLGIIKDIFKAGDL 245

Query: 497 -----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +  V++ N+  +    +   +H  +   +++ +M  FK+G   +L+AT ++
Sbjct: 246 KRVIIFCGSKMKVKQVNAALQRKHINCGEMHSDLEQAERDDIMFKFKSGQLDVLVATDIV 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ D +++I  +  H     +H++ GR  R +     I L       +       L
Sbjct: 306 ARGIDIDDIAMVINYDVPHDAEDYVHRI-GRTARADRDGRAITLVSEDDIYHFQQIEKFL 364

Query: 612 KN 613
           + 
Sbjct: 365 EK 366


>gi|170040294|ref|XP_001847939.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167863866|gb|EDS27249.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 818

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 137/385 (35%), Gaps = 54/385 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------E 319
            PT  Q  AI   LQ+         I   + GSGKTL  LI +   +            +
Sbjct: 412 EPTPIQRQAIPIGLQNRD------IIGIAETGSGKTLAFLIPLLNWIQGLPKIERQETAD 465

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G  A+I+AP   LAQQ  E  +K+ Q   I   ++ G + +  +   L         I+
Sbjct: 466 QGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGLSREEQGFRLRLGCE----IV 521

Query: 380 IGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVL---------- 424
           I T     D ++   L+L       +DE  R          QK      +          
Sbjct: 522 IATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEA 581

Query: 425 ---------LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                      T     +T++ T+     + ++      R+P    I  + +  E  E++
Sbjct: 582 EDATKLMENFNTKKKYRQTVMFTATMPPAVERLARTYL-RRPATVYIGSVGKPTERTEQI 640

Query: 476 KVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             +++E +K   +   +    E       N +   +      E    +   +HG      
Sbjct: 641 VHIVTENEKRKKLMEILSRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 700

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E  + S KNG+  +L+AT V   GID+ D S++I  +         H++ GR GR  + 
Sbjct: 701 REYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRI-GRTGRAGKT 759

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNT 614
              I       S   Y    ++  +
Sbjct: 760 GCAISFCTKDDSHLFYDLKQIIVAS 784


>gi|156043047|ref|XP_001588080.1| hypothetical protein SS1G_10526 [Sclerotinia sclerotiorum 1980]
 gi|154694914|gb|EDN94652.1| hypothetical protein SS1G_10526 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 548

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 81/368 (22%), Positives = 139/368 (37%), Gaps = 51/368 (13%)

Query: 270 PFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------- 318
           PF     PT  Q +A   +L           I   + GSGKT+   +     +       
Sbjct: 195 PFKDFKAPTPIQAAAWPFLLAGRDV------IGVAETGSGKTMAFAVPCVRYMSSLPKNQ 248

Query: 319 -EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
              G +AV+++P   LA Q YE I K  + + +    + G +P+  + +AL+      A 
Sbjct: 249 KNKGPRAVVVSPTRELAMQSYEQIVKLAKASGLECVCVYGGVPKDEQIRALK-----TAD 303

Query: 378 IIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATA----PHVLL 425
           I++ T     D I        +   ++L   D     G ++ ++     T        L+
Sbjct: 304 IVVATPGRLNDLINQGCADLSKARYVVLDEADRMLDKGFEEEIRKIINTTPSLGKRQTLM 363

Query: 426 MTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVII-------PINRIDEVIERLK 476
            TAT     R L  T +       I + P G     + I+       P ++   +++ LK
Sbjct: 364 FTATWPESVRELASTFMTSPVKIAIGDNPTGDLRANSRIVQKVEVVEPRDKEYRLMQLLK 423

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
              S  +K   I      KKE+       R           +A IHG +S   +   +++
Sbjct: 424 QYQSGSQKDDRILVFCLYKKEAT------RVEGFIRQKGFRVAGIHGDLSQEQRTRSLEA 477

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FK+G   +L+AT V   G+D+    ++I           +H++ GR GR  +    I L+
Sbjct: 478 FKSGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRI-GRTGRAGKDGLAITLF 536

Query: 597 HPPLSKNS 604
                  S
Sbjct: 537 TEHDKAQS 544


>gi|154245535|ref|YP_001416493.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154159620|gb|ABS66836.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 609

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 92/451 (20%), Positives = 160/451 (35%), Gaps = 76/451 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---------AGG 322
            PT  Q      +L   +    +  ++    GSGKT+   +AMA  +             
Sbjct: 18  DPTPVQL----AVLAPEASGRDL--LVSAQTGSGKTVAYGLAMADTLLGTDERFGPATAP 71

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           QA+++AP   LA Q     +     T   +    G M     ++AL R     AH+++GT
Sbjct: 72  QALVVAPTRELALQVQREFEWLYAATGARIVSCVGGMDPRQEQRALSR----GAHMVVGT 127

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHV--LLMTATPIP 432
               +D ++  +L        +L   DE    G ++ L+    AT P    LL +AT   
Sbjct: 128 PGRLRDHLERGRLDISAVRVVVLDEADEMLDLGFREDLQFILDATPPERRSLLFSATLPR 187

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA---YWIC 489
              +L      +  +I    A           +  + + IE   V +     A      C
Sbjct: 188 GITMLAKRYQREALRIEVASAEGGHADIEYRAMRVVPKEIEHAVVNVLRFYDAPSAIVFC 247

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
              E  +            +L E   S++A+  G +S  ++ S + + ++G  ++ +AT 
Sbjct: 248 NTRETVRH--------LHATLQERQFSAVAL-SGELSQNERNSALQALRDGRARVCVATD 298

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+    ++I  +  +   +  H+  GR GR       +LL  P   + +     
Sbjct: 299 VAARGIDLPSLGLVIHADLPNDAESLQHR-SGRTGRAGRKGVSVLLVPPFRRRRT----- 352

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
                        ED+  R  G  L    SG P     +   H+ +L            +
Sbjct: 353 -------------EDM-LRGMG--LTPAWSGPPTADEIRKLDHERML------------R 384

Query: 670 DPDLTSVRGQS-IRILLYLYQYNEAFQFIRA 699
           DP LT    +    +   L +   A   + A
Sbjct: 385 DPLLTDEPNEEDAAVARALLEQQPAEHLVAA 415


>gi|148546618|ref|YP_001266720.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148510676|gb|ABQ77536.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 453

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 139/366 (37%), Gaps = 42/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQ----AV 325
            PT  Q +AI   LQ    +      +    GSGKT   ++ +   +   +G +    A+
Sbjct: 35  EPTPVQAAAIPLALQGRDLR------VTAQTGSGKTAAFVLPLLNRLVDLSGPRVEIRAL 88

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + ++ ++Q T I   ++TG      +   L ++      ++IGT   
Sbjct: 89  ILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRKV----PDVLIGTPGR 144

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATP---IP 432
             + +    L L  V        D     G  + ++    +       LL +AT      
Sbjct: 145 LLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGGAAL 204

Query: 433 RTLVLTSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           R ++   L D +   +      A     + +    ++  E I +  +      KA     
Sbjct: 205 RDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLANETFDKAIIFTN 264

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     R++ +R             ++HG     D++  ++ FK G+ K+L+AT V
Sbjct: 265 T---------RAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDV 315

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRLS 609
              G+D+    ++I  +    G   +H++ GR GR G E  +  L+ H   +  S     
Sbjct: 316 AARGLDIDGLDLVINFDMPRSGDEYVHRV-GRTGRAGGEGLAISLITHNDWNLMSSIERY 374

Query: 610 VLKNTE 615
           + +  E
Sbjct: 375 LKQQFE 380


>gi|253698823|ref|YP_003020012.1| DEAD/DEAH box helicase [Geobacter sp. M21]
 gi|251773673|gb|ACT16254.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
          Length = 449

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/400 (18%), Positives = 144/400 (36%), Gaps = 42/400 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
            PT  Q  +I   L           I     G+GKT   ++     +         G + 
Sbjct: 23  QPTPIQAESIPLALSGRD------LIGSAQTGTGKTASFVLPALERLLTPSPLRGKGPRI 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  + ++ Y +  ++    I G MP   +   L +       II+ T  
Sbjct: 77  LVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMMLLAQP----VDIIVATPG 132

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I + +L ++++DE  R            +     +   A    +TL+ T+
Sbjct: 133 RLIDHLDRRSINFSRLEMLVLDEADRM------LDMGFSDDVDRIADAAPAERQTLLFTA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPIN----RIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             D  ++K+ ++   + P++  +        +I++ +     +  + +    +       
Sbjct: 187 TMDDAMAKLAQR-LLKDPVRVAVEGTEVANLQIEQRLHVTDDMRHKNRLLQHLVSDASVT 245

Query: 496 KESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           K   F +  +  + L     S   + A +HG MS   +   + + + G  +LL+AT V  
Sbjct: 246 KAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITNMRRGKVRLLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV   S +I  +   F    +H++ GR GR       I       S N    L  ++
Sbjct: 306 RGLDVTGISHVINYDLPKFAEDYVHRI-GRTGRAGATGIAISFC----SMNEVAYLDRIE 360

Query: 613 NTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELH 652
               G  +    ++  +    L    SG P     +P   
Sbjct: 361 RFT-GKKLPMHVVEGFEPTRPLRRGNSGAPGARKGRPSFD 399


>gi|168011049|ref|XP_001758216.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690672|gb|EDQ77038.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 414

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/353 (19%), Positives = 128/353 (36%), Gaps = 33/353 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 63  KPSAIQQRGIVPFTKGLDV------IQQAQSGTGKTATFCSGILQQLDYQLLECQALVLA 116

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++      Q+ V    G       ++ L+       H+++GT     D
Sbjct: 117 PTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVYD 172

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 173 MLRRNALRADSIKCFVLDEADEMLSRGFKDQIYDIFQLLPQKLQVGVFSATMPPEALEIT 232

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   KI  K      + IK   + ++R +  ++ L          Y      +   
Sbjct: 233 RKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTL-------CDLYETLAITQSVI 285

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 286 FINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 345

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   S++I  +        LH++ GR GR       I        +       
Sbjct: 346 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRDDDRMLQDIQK 397


>gi|325105194|ref|YP_004274848.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324974042|gb|ADY53026.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 608

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 140/383 (36%), Gaps = 41/383 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           +  + F+ PT  QESAI  +L      N  + + Q   G+GKT    + +   ++     
Sbjct: 17  ITELGFTNPTPIQESAIPVLLSG---SNDFVGLAQ--TGTGKTAAFGLPLLELIDNTKNH 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I+ P   L  Q    +K +++N + + V  + G     ++ + ++R       I++
Sbjct: 72  PQALILCPTRELCLQISNDLKNFSKNLKNVNVVAVYGGANIVNQLREIKR----GVQIVV 127

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP--HVLLMTATP 430
            T     D I            ++L   DE    G Q  +      T       L +AT 
Sbjct: 128 ATPGRMLDIINRKAIDFSNVNYVVLDEADEMLNMGFQDDINDILSTTPDTKKTWLFSATM 187

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + +     + ++ +G   I+     +   D+     ++V         +
Sbjct: 188 PKEVRRIAENYMTNPHELTVGKQNSGNANIEHEYYIVKARDKYAAFKRIVDFNPDIFGIV 247

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +           E   SL +    +   +HG +S   ++ VM  ++  + +LLIAT
Sbjct: 248 FCRTK-------IETQEIAESLVKDGY-NADSLHGDLSQQQRDKVMKRYREKSLQLLIAT 299

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV + + +I  +         H+  GR  R  +    I + +           
Sbjct: 300 DVAARGIDVNNVTHVINYSLPDEIENYTHR-SGRTARAGKTGVSIAIINSREIHKIRQIE 358

Query: 609 SVL------KNTEDGFLIAEEDL 625
            V+           GF + E+ L
Sbjct: 359 KVIGKQFTKAEIPTGFDVVEKQL 381


>gi|307204940|gb|EFN83479.1| Probable ATP-dependent RNA helicase DDX43 [Harpegnathos saltator]
          Length = 633

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 121/366 (33%), Gaps = 45/366 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---------AGG 322
            P+  Q  A   +L           I     G+GKTL  L+     ++          G 
Sbjct: 246 KPSPIQCQAWPILLSGQD------LIGIAQTGTGKTLAFLLPALIHIDGQSTPRSERKGP 299

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             ++MAP   LA Q  + + KY+ +  I    + G   +  +   + +       I+I T
Sbjct: 300 NVLVMAPTRELALQIEKEVGKYSYH-GIKAVCVYGGGNRKEQINIVTK----GVQIVIAT 354

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP 432
                D +Q   L        IL   D     G   Q R  L    +    ++ +AT   
Sbjct: 355 PGRLNDLVQAKVLDVTSVTYLILDEADRMLDMGFEPQIRKTLLDVRSDRQTVMTSATWPQ 414

Query: 433 --RTLVLTSLGDIDIS---KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             R L  + + +        +          +  +I     + ++      +    K   
Sbjct: 415 GVRRLAQSYMKNPIQVFVGSLDLVAVHTVTQRVYLIDEEEKNNMMFDFFREMGVNDKVIV 474

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +++V+   S           IHG     D+E  ++  K G   +L+A
Sbjct: 475 FF---------GKKAMVDHVASDLAVAGIECQSIHGDRDQCDREQALEDMKTGNVHILLA 525

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+ D + ++  +        +H++ GR GR       I         ++   
Sbjct: 526 TDVASRGLDIEDITHVLNYDFPRDIEEYVHRV-GRTGRAGRTGESITFMTRKDWSHAQQL 584

Query: 608 LSVLKN 613
           +++L+ 
Sbjct: 585 INILEE 590


>gi|303277715|ref|XP_003058151.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460808|gb|EEH58102.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 413

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 126/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFTKGLDV------IQQAQSGTGKTATFCAGVLQQLDYEKEECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       +      G       ++ L+       H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLNVKCHACVGGTSVREDQRILQS----GVHVVVGTPGRVYD 171

Query: 389 SIQYYKLI--------LVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L         L   DE    G + ++    +   +   V + +AT  P  L +T
Sbjct: 172 MLRRRALKPDHIKIFSLDEADEMLSRGFKDQIYDIFQLLPSKLQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ D  ++ L          Y      +   
Sbjct: 232 RKFMTKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FANTRRKVDWLTDKMRARDFTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 345 VQQVSLVINFDLPTQPENYLHRI-GRSGRFGRKGVAINFVTKD 386


>gi|242765545|ref|XP_002340996.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724192|gb|EED23609.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 497

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 147/370 (39%), Gaps = 47/370 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           +PT  Q +    +            I   + GSGKTL   +     +         +  +
Sbjct: 103 APTSVQSATWPLLFAGRDV------IGIAETGSGKTLAFGLPCLKNMVDSEKKLKPSHPR 156

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AVI+ P   LA Q YE ++ Y     + V  I G + +  +R+AL+  A     I++ T 
Sbjct: 157 AVILTPTRELAMQIYEQLEGYALRVSVKVTCIFGGVRKDEQREALKNTA-----IVVATP 211

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLT---QKATAPHVLLMTATPIP 432
              +D     +I   K+  +++DE  R    G +Q +K        +     + TAT   
Sbjct: 212 GRLKDLESEGAINLSKVKYLVLDEADRMLDKGFEQDIKDIVSPMPVSRRQTAMFTATWPV 271

Query: 433 --RTLVLTSLGDIDISKITEKPAGR-------KPIKTVIIPINRIDEVIERLKVVLSEGK 483
             R L  +   D  +  +  KP+         K +  V+ P ++ + + + L  +  E  
Sbjct: 272 AVRNLANSFTQDPVMVTVGGKPSEDPRANTRIKQVVEVLDPRDKENRLTQILGKLTRESP 331

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +   +   + +K+         R   L +    ++A IHG +S  D+   + +FK+G   
Sbjct: 332 QGKILVFCLYKKEAM-------RIERLIQSRGYAVAGIHGDLSQSDRFKSLAAFKSGDVT 384

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+D+     ++           +H++ GR GR       I L+      +
Sbjct: 385 ILVATDVAARGLDIPAVKTVVNVTFPLTIEDYVHRI-GRTGRAGADGHAITLFTETDKAH 443

Query: 604 SYTRLSVLKN 613
           S   ++VLK 
Sbjct: 444 SGALINVLKA 453


>gi|168063959|ref|XP_001783934.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664528|gb|EDQ51244.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 127/343 (37%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFTKGLDV------IQQAQSGTGKTATFCSGILQQLDYQLLECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++      Q+ V    G       ++ L+       H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVYD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 172 MLRRNALRADSIKCFVLDEADEMLSRGFKDQIYDIFQLLPQKLQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   KI  K      + IK   + ++R +  ++ L          Y      +   
Sbjct: 232 RKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTKE 386


>gi|152999828|ref|YP_001365509.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151364446|gb|ABS07446.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 411

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 128/358 (35%), Gaps = 43/358 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           L ++ +  PT  Q  AI  IL       +   +     G+GKT    + +   + A    
Sbjct: 16  LASLGYESPTPIQLEAIPTILA------KRDVMAGAHTGTGKTAAFALPILHHLLALSPL 69

Query: 321 -------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                    +A+++ P   LA Q  +   KY + T I V I  G +    +        +
Sbjct: 70  QELTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAV----FN 125

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHV 423
               ++I T     D ++   L L  +        D     G    ++  L Q  +    
Sbjct: 126 AGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQT 185

Query: 424 LLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
           LL +AT       L  T L D  + ++ ++      I+ V+  ++   +      +V S+
Sbjct: 186 LLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDADRKTELVSHLVRSK 245

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 I  +         +  V++               HG +S   +E V+  FK G 
Sbjct: 246 NWHQVLIFSRT--------KQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGK 297

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            ++L+AT V   G+D+V+   +I           +H++ GR GR       I L+   
Sbjct: 298 IQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRI-GRTGRAGSAGLAITLFSQE 354


>gi|37677247|ref|NP_937643.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201792|dbj|BAC97613.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 436

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 135/367 (36%), Gaps = 33/367 (8%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            + + K      +++  ++   + ++    PT  Q  AI ++L           +   + 
Sbjct: 18  QKHKVKLMPFSTLSLSSELIHALPKDFK-KPTDIQALAIPELLAGQD------LLALANT 70

Query: 303 GSGKTLVALIAMAAAVEAGG--QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMP 360
           GSGKTL   + +   +      +A+I+ P   LA Q  E I +  Q   +    + G + 
Sbjct: 71  GSGKTLAYGLPLLEKLRVNPEQKALILVPTRELATQVSEAINQVGQALGLNAVCLCGGVD 130

Query: 361 QAHRRKALERIAHGQAHIIIGTHALFQD----SIQYYKLILVIVDEQHRFGVQQRLKLTQ 416
           +  + +AL        HI++ T     D     +    +  +++DE  R        L  
Sbjct: 131 KEQQLQALAT----NPHILVATTGRLVDLANNGLDLSNIHYLVLDEADR--------LLD 178

Query: 417 KATAPHVLLMTA-TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
               P V  + A T   R   + S    D  K   K   + P +      N  ++ I   
Sbjct: 179 MGFWPDVQNIAAQTSSQRQTAMFSATFSDELKGKAKLLMQAPKQVAAHQENSTNQDIAET 238

Query: 476 KVVLSEGKKAYWICPQIEEKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             ++++G K   +   I++   +        +   +           S   +HG  S  +
Sbjct: 239 LYLVNKGSKTKALIELIQKNAWTQALVFIGAKENADGLAKKLNKAGISTNALHGDKSQAE 298

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E  +  FK+G  ++LIAT ++  GI +    ++I           +H++ GR  R  E 
Sbjct: 299 REEALAQFKSGQTQVLIATDLLARGIHIEQLPVVINFELPMHAETYVHRV-GRTARAGEQ 357

Query: 590 SSCILLY 596
              + L 
Sbjct: 358 GVALSLV 364


>gi|327479422|gb|AEA82732.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
          Length = 441

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 131/348 (37%), Gaps = 39/348 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
            PT  Q  AI  +L+          +     G+GKT    + +   +            +
Sbjct: 23  KPTPVQAEAIPAVLKGRD------LMAAAQTGTGKTAGFALPLLQRLTMEGAKVASNSVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA+Q +E  + Y QN  +    + G +    +  AL +       +++ T 
Sbjct: 77  ALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMALRK----GIDVLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++ + +L  +++DE  R        L          L +A P  R  +L 
Sbjct: 133 GRLLDLYRQNAVGFAQLQALVLDEADRM-------LDLGFAEELDALFSALPKKRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    +  +   +   R P+   + P N   + +++  V + + +K+      + E++  
Sbjct: 186 SATFSEPIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLHLLAERRWG 245

Query: 499 N-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    + V +  + L     +S AI HG      +   ++ FK G  ++L+AT V 
Sbjct: 246 QVLVFVKTRKGVDQLVDELQAQGIASDAI-HGDKPQASRLRALERFKAGEVQVLVATDVA 304

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             G+D+ D   ++  +        +H++ GR GR       I L    
Sbjct: 305 ARGLDIHDLPQVVNFDLPIVAEDYVHRI-GRTGRAGASGEAISLVAAD 351


>gi|291244816|ref|XP_002742290.1| PREDICTED: Vasa-like, partial [Saccoglossus kowalevskii]
          Length = 679

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 136/376 (36%), Gaps = 50/376 (13%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA-AVEAG-------- 321
             PT  Q+ +I  IL+          +     GSGKT   L+ +    +++G        
Sbjct: 321 LKPTPVQKYSIPIILRGRD------LMSCAQTGSGKTAAFLLPVLTGMIKSGLSGSSFSE 374

Query: 322 ---GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               QA+++ P   LA Q +    K+  +T +   +  G     H+ + L R  +    +
Sbjct: 375 AVEPQALVITPTRELALQIHHEALKFAYSTILRPVVCYGGTSVQHQLRELSRGCN----L 430

Query: 379 IIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKL------TQKATAPHVL 424
           ++ T     D +        +   LIL   D     G +  ++                L
Sbjct: 431 LVATPGRLLDFVGKGKVGLGKLKYLILDEADRMLDMGFEPEIRRLVASPNMPSKEDRQTL 490

Query: 425 LMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN----RIDEVIERLKVV 478
           + +AT     + L    L D     +         I+  ++ +     + ++++E L  V
Sbjct: 491 MFSATFPEEIQKLAGDFLNDYIFLTVGRVGGTTPDIEQSVVQMESQFQKKEKLMEILIDV 550

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +S       +   +E K+ ++F        S           IHG     ++E  +  FK
Sbjct: 551 ISSFPGTEKVVVFVETKRSADF------VASYLSQSGFPTTSIHGDRLQREREEALSCFK 604

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-H 597
            G   +L+AT+V   G+D+     ++  +        +H++ GR GR   I   +  + +
Sbjct: 605 RGETPVLVATSVAARGLDIPGVKHVVNFDLPDNIDEYVHRI-GRTGRVGNIGKAVSFFDN 663

Query: 598 PPLSKNSYTRLSVLKN 613
              +  +   + +L +
Sbjct: 664 DRDTALARPLVKILSD 679


>gi|209771328|gb|ACI83976.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|320642613|gb|EFX11861.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str.
           493-89]
 gi|320647966|gb|EFX16674.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str. H
           2687]
          Length = 457

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|300779124|ref|ZP_07088982.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
 gi|300504634|gb|EFK35774.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
          Length = 373

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 131/360 (36%), Gaps = 35/360 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAV 325
            PT+ Q +AI  IL           I     G+GKT    + +   ++         + +
Sbjct: 24  KPTEIQYTAIPHILAGKD------IIGCAQTGTGKTAAFAMPILQLLKKYTPDHKEIRTL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E    Y++   +    I G +    +  AL +    +  I++ T   
Sbjct: 78  ILTPTRELAIQIEENFAVYSKYLPLSQLSIYGGVSAGGQLAALRK----RVDILVATPGR 133

Query: 386 FQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D      I   K+ + ++DE  R      +   +K      +L       +TL  ++ 
Sbjct: 134 LLDLVNQRHIDLSKIEIFVLDEADRMLDMGFINDVKK------VLKLIPQKRQTLFFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
               I K  E      P+K  + P++   + +++    + +  K   +   ++ +     
Sbjct: 188 MPSGIRKFAETILN-NPVKVTVTPVSSTAQTVKQSVYFVEKRDKTGLLIDLLQNENMRRS 246

Query: 500 -----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 + +  +     E      A IHG  S   +++ +D FK+   K+LIAT +   G
Sbjct: 247 LVFTRTKYIANKLVQQLEGVGIFAAAIHGNKSQTARQNALDDFKSSKIKVLIATDIAARG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           ID+ D   ++     +     +H++ GR GR     + I         +      ++  T
Sbjct: 307 IDIDDLPHVVNYELPNIPETYVHRI-GRTGRAGTEGTAISFCDTDERLDLKNIQKLIGFT 365


>gi|330972612|gb|EGH72678.1| helicase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 498

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 132/378 (34%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GK     + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKAGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|260941746|ref|XP_002615039.1| hypothetical protein CLUG_05054 [Clavispora lusitaniae ATCC 42720]
 gi|238851462|gb|EEQ40926.1| hypothetical protein CLUG_05054 [Clavispora lusitaniae ATCC 42720]
          Length = 533

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/377 (20%), Positives = 143/377 (37%), Gaps = 42/377 (11%)

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--- 318
            QK++   P  PT  Q  +   +L       +   I   + GSGKT    +     +   
Sbjct: 134 VQKVISKFP-KPTPIQAVSWPYLLS------QKDVIGVAETGSGKTFAFGVPAVNNILKE 186

Query: 319 -EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
            + G + + ++P   LA Q Y+ ++  T+ T I    + G + +  + + L+      A 
Sbjct: 187 KKQGLKVLCLSPTRELALQIYDNLELLTKATGISCVAVYGGVSKMDQIEKLK-----TAS 241

Query: 378 IIIGTHALFQDS-----IQYYKLILVIVDEQHRF-------GVQQRLKLTQKATAPHVLL 425
           I + T     D      +    +  +++DE  R         ++Q +  T        L+
Sbjct: 242 IAVATPGRLVDLLEDGLVDLSSVDYLVLDEADRMLDKGFEEHIKQIIGHTPAKAQRQTLM 301

Query: 426 MTATPIP--RTLVLTSLGDIDISKITEKPA-----GRKPIKTVIIPINRIDEVIERLKVV 478
            TAT     R L    +       I E+           I  VI P ++  ++++ L+  
Sbjct: 302 FTATWPKEVRELAAEFMTSPVKVTIGERDELSANKRITQIVEVIDPRDKERKLVQLLRKY 361

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            S   +   +      KKE++      R   L +     +A IHG +S   +   +  FK
Sbjct: 362 QSGSNRNDKVLIFALYKKEAS------RVEGLLQRSGFKVAAIHGDLSQQQRTHALGQFK 415

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   LL+AT V   G+D+ +  ++I           +H++ GR GR  +      L+  
Sbjct: 416 SGESNLLLATDVAARGLDIPNVKVVINLTFPLTAEDYVHRI-GRTGRAGQTGIAHTLFTE 474

Query: 599 PLSKNSYTRLSVLKNTE 615
                S   +++L+   
Sbjct: 475 HEKHLSGALMNILRGAN 491


>gi|255691171|ref|ZP_05414846.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565]
 gi|260623074|gb|EEX45945.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565]
          Length = 374

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/375 (18%), Positives = 147/375 (39%), Gaps = 31/375 (8%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N+   I + I      +PT  QE AI   L       +   +     G+GKT    I +
Sbjct: 6   LNIIEPILKAIEEKGYIAPTSIQEKAIPAALA------KRDILGCAQTGTGKTASFAIPI 59

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              ++A        G +A+I+ P   LA Q  E I  Y++ T++   +I G + Q  +  
Sbjct: 60  IQHLQANKETDKRQGIKALILTPTRELAMQISECIDDYSKYTRVRHGVIFGGVNQRPQVD 119

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            L +       I++ T     D I    + L  + E        R+           +L 
Sbjct: 120 MLRK----GIDILVATPGRLLDLINQGHIHLTNI-EYFVLDEADRMLDMGFIHDIKRILP 174

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +TL  ++     I  +T K   + P+K  I P +   + I+++   + + +K+ 
Sbjct: 175 KLPKEKQTLFFSATMPDSIIALT-KSLLKNPVKIYITPKSSTVDSIKQIIYFVEKKEKSQ 233

Query: 487 WICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +   +++ ++         +   ++   +          IHG  S   ++S + +FK+G
Sbjct: 234 LLISILQKAEDRSVLIFSRTKHNADKIVRILGKAGIGSQAIHGNKSQAARQSALGNFKSG 293

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             K+++AT +   GID+ +  ++I  +        +H++ GR GR     + +       
Sbjct: 294 KTKVMVATDIASRGIDINELPLVINYDLPDVPETYVHRI-GRTGRAGNEGTALTFC---- 348

Query: 601 SKNSYTRLSVLKNTE 615
           S+     ++ ++   
Sbjct: 349 SQEERKLVNDIQKLT 363


>gi|169837346|ref|ZP_02870534.1| ATP-dependent RNA helicase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 477

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 136/355 (38%), Gaps = 32/355 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            P++ Q+  I ++L     K R   I Q   G+GKT    I +   +EA    +A+I+AP
Sbjct: 24  EPSEIQKLVIPELL-----KERTHLIGQAQTGTGKTAAFGIPILETIEADKTVRALILAP 78

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  + I        + V  + G     ++ K L+        I++GT     D 
Sbjct: 79  TRELANQVADEIYSLKGEKDLKVLAVYGGASIENQIKKLKS----GVDIVVGTPGRVMDL 134

Query: 390 IQYYKL--------ILVIVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           ++   L        +L   DE    G  +    + +K      +L  +  IP+ ++  + 
Sbjct: 135 MRKKILKVDKLDYFVLDEADEMLNMGFLEDIEAILEKTNDEKKMLFFSATIPKAIMAIAK 194

Query: 441 GDI---DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
             +    + K+ +K       + +   + + D+     +V+  E      +  +      
Sbjct: 195 KFMPEHKLLKVAKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQDFYGIVFCRT----- 249

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +S V+   +  +        IHG ++   ++  +D FK     +L+AT V   GIDV
Sbjct: 250 ---KSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKKILTILVATDVAARGIDV 306

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            + + +I  +      + +H++ GR GR  +    I    P  +        + K
Sbjct: 307 SNLTHVINYSIPQEAESYVHRI-GRTGRAGQKGVAITFVTPREASKLAQIKRITK 360


>gi|255078748|ref|XP_002502954.1| predicted protein [Micromonas sp. RCC299]
 gi|226518220|gb|ACO64212.1| predicted protein [Micromonas sp. RCC299]
          Length = 435

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/365 (19%), Positives = 131/365 (35%), Gaps = 38/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           SPT  Q       L           I   + GSGKTL  L+     + A        G  
Sbjct: 70  SPTPVQSQTWPAALSGRDV------ISIAETGSGKTLAFLLPAVVHINAQPYLERGDGPI 123

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA Q  E    + ++++I    I G  P+  +  AL         + + T 
Sbjct: 124 VLILAPTRELAVQIQEQAATFGKSSKIKSACIYGGAPRNAQIAALRE----GVELCVATP 179

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTATPIPR 433
               D +        ++   ++DE  R        Q R            LL TAT    
Sbjct: 180 GRLLDLLNAKATNLRRVTYFVLDEADRMLDLGFEPQIRRVERLTRPDRQTLLFTATWPAE 239

Query: 434 TLVLTSLGDIDISKIT------EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                     D+  +               I  V+   ++  +++  L+  L E     W
Sbjct: 240 VAAAAGDFTNDVVTVRIGGEALRASDNVSQIVEVVDEDDKHAKLVGWLERALGEADAGGW 299

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             P++      + ++ V+       H       IHG  +  ++E V+  F+ G   +++A
Sbjct: 300 -TPRV--IVFLSSKARVDSATRRLRHEGFPALSIHGDKTQEEREWVLGEFRAGKSPVMLA 356

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV D S++I  +        +H++ GR GR     +   ++    ++++ + 
Sbjct: 357 TDVAARGLDVKDVSLVINYDFPAKMEDYVHRI-GRTGRAGAKGAARSMFAAGDARHARSL 415

Query: 608 LSVLK 612
             +L+
Sbjct: 416 CGLLQ 420


>gi|68478729|ref|XP_716633.1| hypothetical protein CaO19.7392 [Candida albicans SC5314]
 gi|74656359|sp|Q5A4E2|DED1_CANAL RecName: Full=ATP-dependent RNA helicase DED1
 gi|46438305|gb|EAK97638.1| hypothetical protein CaO19.7392 [Candida albicans SC5314]
 gi|238881007|gb|EEQ44645.1| ATP-dependent RNA helicase ded1 [Candida albicans WO-1]
          Length = 672

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 131/376 (34%), Gaps = 49/376 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA-AVEAGG-------- 322
            PT  Q+ ++  +            +     GSGKT   L  + + +   G         
Sbjct: 208 KPTPVQKYSVPIVAAGRD------LMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESNG 261

Query: 323 ---------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                      ++MAP   L  Q YE  KK++  + +   ++ G      + + ++R   
Sbjct: 262 AFSSHKVYPTILVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDR--- 318

Query: 374 GQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
               +++ T    +D +   K        L+L   D     G + +++            
Sbjct: 319 -GCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYI-----VEECD 372

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           M A    +TL+ ++    DI  +  +   +  +   +  +    E I +  + + + +K 
Sbjct: 373 MPAVKDRQTLMFSATFPRDIQMLA-RDFLKDYVFLSVGRVGSTSENITQKILYVEDDEKK 431

Query: 486 YWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
             I   +   +       +  + + +               IHG  S  ++E  + +FKN
Sbjct: 432 SVILDLLSANENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKN 491

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+ + S +I  +        +H++ GR GR   +      ++  
Sbjct: 492 GAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRI-GRTGRAGNVGIATAFFNRN 550

Query: 600 LSKNSYTRLSVLKNTE 615
                   + +L    
Sbjct: 551 NKNVVKGLIELLSEAN 566


>gi|330504959|ref|YP_004381828.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328919245|gb|AEB60076.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 447

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 129/344 (37%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQ------- 323
           +PT  Q  AI  +L+          +     G+GKT    + +   +   G Q       
Sbjct: 23  TPTPVQSQAIPTVLKGRD------LMAAAQTGTGKTAGFALPLLQRLTLEGPQVASNSVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA+Q  +  + Y Q+  +    + G +    +   L +       +++ T 
Sbjct: 77  ALVLTPTRELAEQVLQSFQAYGQHLPLTSYAVYGGVSINPQMMKLRK----GVDVLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++++ +L  +I+DE  R        L          L +A P  R  +L 
Sbjct: 133 GRLLDLYRQNAVKFSQLQTLILDEADRM-------LDLGFARELDELFSALPKKRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +       R P+   + P N   + +++  + + + +K+      ++ K+  
Sbjct: 186 SATFSDAIRQMAGELLRDPLSVEVSPRNAAAKTVKQWLIPVDKKRKSELFLHLLQVKRWG 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   R  V++          +   IHG      +   ++ FK G  ++L+AT V  
Sbjct: 246 QVLVFAKTRKGVDQLEQELLAMGVAADSIHGDKPQPSRLRALERFKAGEVQILVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            G+D+ D  +++  +        +H++ GR GR       I L 
Sbjct: 306 RGLDIDDLPLVVNLDLPINAEDYVHRI-GRTGRAGSTGEAISLV 348


>gi|325102936|ref|YP_004272590.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324971784|gb|ADY50768.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 408

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 81/405 (20%), Positives = 138/405 (34%), Gaps = 41/405 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q  +I  IL           +     G+GKT    I + + +E           +
Sbjct: 23  KPTDIQFKSIPQILSGQD------ILAIAQTGTGKTAAFAIPLISMLERSKPHLDKPTIK 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AV+M P   LA Q  +      + T II   + G +    + K L      +A ++I T 
Sbjct: 77  AVVMVPTRELAIQIEQVFLNLGKYTSIIPLAVIGGVEIEPQLKKL-----NKADVLIATP 131

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    L L  +D       +    L Q        L+T  P  R  +  S    
Sbjct: 132 GRIMDLVFKGHLYLKQID--FLVLDEADRMLEQGFYNDIKKLITLLPKRRQTMFFSATIN 189

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--- 500
           D  K        KP++  + P + + + ++     +    K +++   I+E +       
Sbjct: 190 DTIKDLAYALVNKPVRIQLSPKDPVSKNVDHAVAYVGMDDKRFFLERLIKENQGKKIIVF 249

Query: 501 ---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   ER     E        IHG     ++  V+D+F++G  ++LIAT +   G+DV
Sbjct: 250 VRTKIRAERVAKAMERVNIHTETIHGDKDQKNRFQVLDNFRDGKNQILIATDISARGLDV 309

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
                ++  +        +H++ GR GRG      +                 +    D 
Sbjct: 310 KGVDFVVNYDLPEVPENYVHRI-GRTGRGTSRGRAVSFCSEEEKAYLDAIQEYIGKPIDV 368

Query: 618 FLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKD 662
             I       +   E           F  A P    SL+  AR+D
Sbjct: 369 MEI------NKGAYE-------ETIVFSQANPYDWKSLMNEARQD 400


>gi|292487709|ref|YP_003530582.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora
           CFBP1430]
 gi|292898944|ref|YP_003538313.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291198792|emb|CBJ45901.1| putative ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291553129|emb|CBA20174.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora
           CFBP1430]
 gi|312171822|emb|CBX80079.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora ATCC
           BAA-2158]
          Length = 470

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 135/374 (36%), Gaps = 45/374 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
            PT  Q  AI  +L           +     G+GKT    + +   + +           
Sbjct: 23  EPTPIQRQAIPVVLAGRD------LMASAQTGTGKTAGFTLPLLQLLSSHNPHPKGRRPV 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E ++ Y++   +   ++ G +    +   L     G   +++ T
Sbjct: 77  RALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMMKLR----GGVDVLVAT 132

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTAT--P 430
                D     ++   K+ ++++DE  R          R  L +       LL +AT   
Sbjct: 133 PGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSD 192

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +TL    L + +  ++  +    + +   +  +++  +      ++     +   +  
Sbjct: 193 EIKTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVDKKRKRELLSLLIGRGNWQQVLVFT 252

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           + +                L++   ++ AI HG  S   +   +  FK+G  ++L+AT +
Sbjct: 253 RTKHGANH-------LAEQLNKDGITAAAI-HGNKSQGARTRALSDFKDGKIRVLVATDI 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GID+ +   ++     +     +H++ GR GR   +   + L      K       V
Sbjct: 305 AARGIDIEELPHVVNYELPNVPEDYVHRI-GRTGRAAAVGEALSLVCVDEHKLLRDIERV 363

Query: 611 LKN-----TEDGFL 619
           LK        DGF 
Sbjct: 364 LKREIPRMAIDGFE 377


>gi|187927522|ref|YP_001898009.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12J]
 gi|187724412|gb|ACD25577.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
          Length = 560

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 126/366 (34%), Gaps = 43/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q  AI  IL+          +     G+GKT    + +   + A           
Sbjct: 23  EPTPIQRQAIPAILRG------GDLLAGAQTGTGKTAGFTLPLLHRLSAAQPNKVQTPQG 76

Query: 323 -----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                +A+++ P   LA Q  E ++ Y +   +   ++ G +    +  AL+R       
Sbjct: 77  MRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKR----GVD 132

Query: 378 IIIGTHALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           I++ T     D +         + L+++DE  R      +   +K      +L       
Sbjct: 133 IVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRK------ILNILPAKR 186

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           + L+ ++    DI ++ ++    KP    +   N   E +E+    +   +K   +   +
Sbjct: 187 QNLLFSATFSDDIRELADRLLD-KPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLV 245

Query: 493 EEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +            +    R              IHG  S   +   +  FK GT ++L+
Sbjct: 246 RDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFKAGTLRVLV 305

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT +   GID+     ++  +  +     +H++ GR GR       I L           
Sbjct: 306 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGAQGEAISLVCVDEHGLLRD 364

Query: 607 RLSVLK 612
              ++K
Sbjct: 365 IERLIK 370


>gi|71734815|ref|YP_276470.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555368|gb|AAZ34579.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 450

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 131/351 (37%), Gaps = 38/351 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + +PT  Q  AI  +L           +     G+GKT    + +   +   G  
Sbjct: 24  LEALGYQTPTPVQTQAIPPVLAGRD------LMAAAQTGTGKTAGFALPLLQRLTMEGPK 77

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+++AP   LA Q +E I++Y ++  +      G +    +   L +      
Sbjct: 78  VAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRK----GV 133

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +++ T     D     ++++ +L  +I+DE  R        L          +    P 
Sbjct: 134 DVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRM-------LDLGFAEELRGIYAVLPK 186

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  ++        P+   + P N     +++  V + + +KA      
Sbjct: 187 QRQTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHL 246

Query: 492 IEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +++ +          R  V++     +    +   IHG      ++  +D FK+   K+L
Sbjct: 247 MKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKIL 306

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +AT V   G+D+ D   ++  +        +H++ GR GR       I L 
Sbjct: 307 VATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGLTGEAISLV 356


>gi|16129304|ref|NP_415859.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89108191|ref|AP_001971.1| ATP-dependent RNA helicase specific for 23S rRNA [Escherichia coli
           str. K-12 substr. W3110]
 gi|157160855|ref|YP_001458173.1| ATP-dependent RNA helicase DbpA [Escherichia coli HS]
 gi|170020291|ref|YP_001725245.1| ATP-dependent RNA helicase DbpA [Escherichia coli ATCC 8739]
 gi|170081022|ref|YP_001730342.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188494462|ref|ZP_03001732.1| ATP-independent RNA helicase DbpA [Escherichia coli 53638]
 gi|194436972|ref|ZP_03069071.1| ATP-independent RNA helicase DbpA [Escherichia coli 101-1]
 gi|238900578|ref|YP_002926374.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BW2952]
 gi|253773655|ref|YP_003036486.1| ATP-dependent RNA helicase DbpA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161422|ref|YP_003044530.1| ATP-dependent RNA helicase DbpA [Escherichia coli B str. REL606]
 gi|256022943|ref|ZP_05436808.1| ATP-dependent RNA helicase DbpA [Escherichia sp. 4_1_40B]
 gi|300927858|ref|ZP_07143420.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300948429|ref|ZP_07162531.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300954597|ref|ZP_07167042.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|301022682|ref|ZP_07186535.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|301647156|ref|ZP_07246977.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|307137985|ref|ZP_07497341.1| ATP-dependent RNA helicase DbpA [Escherichia coli H736]
 gi|312971541|ref|ZP_07785716.1| ATP-independent RNA helicase dbpA [Escherichia coli 1827-70]
 gi|331641910|ref|ZP_08343045.1| ATP-independent RNA helicase DbpA [Escherichia coli H736]
 gi|416881|sp|P21693|DBPA_ECOLI RecName: Full=ATP-independent RNA helicase dbpA
 gi|1742212|dbj|BAA14946.1| ATP-dependent RNA helicase specific for 23S rRNA [Escherichia coli
           str. K12 substr. W3110]
 gi|1787605|gb|AAC74425.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|157066535|gb|ABV05790.1| ATP-independent RNA helicase DbpA [Escherichia coli HS]
 gi|169755219|gb|ACA77918.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169888857|gb|ACB02564.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188489661|gb|EDU64764.1| ATP-independent RNA helicase DbpA [Escherichia coli 53638]
 gi|194423955|gb|EDX39943.1| ATP-independent RNA helicase DbpA [Escherichia coli 101-1]
 gi|238860048|gb|ACR62046.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BW2952]
 gi|242377119|emb|CAQ31847.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BL21(DE3)]
 gi|253324699|gb|ACT29301.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973323|gb|ACT38994.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           B str. REL606]
 gi|253977536|gb|ACT43206.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BL21(DE3)]
 gi|260449522|gb|ACX39944.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|299881170|gb|EFI89381.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|300318431|gb|EFJ68215.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300452053|gb|EFK15673.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300464143|gb|EFK27636.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|301074642|gb|EFK89448.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|309701644|emb|CBJ00951.1| ATP-independent RNA helicase [Escherichia coli ETEC H10407]
 gi|310336138|gb|EFQ01338.1| ATP-independent RNA helicase dbpA [Escherichia coli 1827-70]
 gi|315135984|dbj|BAJ43143.1| ATP-dependent RNA helicase DbpA [Escherichia coli DH1]
 gi|323937669|gb|EGB33937.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323942290|gb|EGB38461.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323962410|gb|EGB57993.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323973547|gb|EGB68732.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|331038708|gb|EGI10928.1| ATP-independent RNA helicase DbpA [Escherichia coli H736]
 gi|332343042|gb|AEE56376.1| ATP-independent RNA helicase DbpA [Escherichia coli UMNK88]
          Length = 457

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|15801822|ref|NP_287840.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 EDL933]
 gi|15831181|ref|NP_309954.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           Sakai]
 gi|168749013|ref|ZP_02774035.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756028|ref|ZP_02781035.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4401]
 gi|168769429|ref|ZP_02794436.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775172|ref|ZP_02800179.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782877|ref|ZP_02807884.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788327|ref|ZP_02813334.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC869]
 gi|168799657|ref|ZP_02824664.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC508]
 gi|208811167|ref|ZP_03253000.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815022|ref|ZP_03256201.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820345|ref|ZP_03260665.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399223|ref|YP_002270403.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4115]
 gi|217329397|ref|ZP_03445477.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           TW14588]
 gi|254792938|ref|YP_003077775.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224337|ref|ZP_05938618.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257409|ref|ZP_05949942.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291282438|ref|YP_003499256.1| ATP-independent RNA helicase DbpA [Escherichia coli O55:H7 str.
           CB9615]
 gi|331652393|ref|ZP_08353412.1| ATP-independent RNA helicase DbpA [Escherichia coli M718]
 gi|12515409|gb|AAG56454.1|AE005371_10 ATP-dependent RNA helicase [Escherichia coli O157:H7 str. EDL933]
 gi|13361392|dbj|BAB35350.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. Sakai]
 gi|187769343|gb|EDU33187.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016533|gb|EDU54655.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999660|gb|EDU68646.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356796|gb|EDU75215.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361561|gb|EDU79980.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4486]
 gi|189371812|gb|EDU90228.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC869]
 gi|189377976|gb|EDU96392.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC508]
 gi|208724673|gb|EDZ74381.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731670|gb|EDZ80358.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740468|gb|EDZ88150.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160623|gb|ACI38056.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209771330|gb|ACI83977.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209771332|gb|ACI83978.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209771334|gb|ACI83979.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209771336|gb|ACI83980.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|217317836|gb|EEC26264.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           TW14588]
 gi|254592338|gb|ACT71699.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O157:H7 str. TW14359]
 gi|290762311|gb|ADD56272.1| ATP-independent RNA helicase DbpA [Escherichia coli O55:H7 str.
           CB9615]
 gi|320189895|gb|EFW64547.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC1212]
 gi|320659158|gb|EFX26750.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str. USDA
           5905]
 gi|326340988|gb|EGD64781.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           1125]
 gi|326343226|gb|EGD66993.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           1044]
 gi|331050671|gb|EGI22729.1| ATP-independent RNA helicase DbpA [Escherichia coli M718]
          Length = 457

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|323349512|gb|EGA83736.1| Fal1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 399

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 152/395 (38%), Gaps = 48/395 (12%)

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           +++D     ++     +K         +N++  + + I      +P+  Q  AI  I+  
Sbjct: 1   MSFDREEDQKLKFKTSKKLKVSFTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG 60

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY 344
                    I Q   G+GKT    I +  A++      QA+I++P   LA Q  + +K  
Sbjct: 61  KDV------IAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNL 114

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVI 399
                +    ITG          L+++       + GT     D I+        + +++
Sbjct: 115 GDYMNVNAFAITGGKTLKD---DLKKMQKHGCQAVSGTPGRVLDMIKRQMLQTRNVQMLV 171

Query: 400 VDEQHRF-----GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           +DE         G +Q++         +          + +V+++  + DI ++T K   
Sbjct: 172 LDEADELLSETLGFKQQIYDIFAKLPKNC---------QVVVVSATMNKDILEVTRKFMN 222

Query: 455 RKPIKTVIIPINRIDEV-IERLKVVLSEGKKAYWICPQIEEKKE----------SNFRSV 503
             P+K ++    + DE+ +E +K  +    K  W    + +  +           N +  
Sbjct: 223 -DPVKILV----KRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKK 277

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V+  +        ++  +HG M   +++ VM+ F+ G  ++LI+T V   GIDV   S++
Sbjct: 278 VDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLV 337

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           I  +        +H++ GR GR       I     
Sbjct: 338 INYDLPEIIENYIHRI-GRSGRFGRKGVAINFITK 371


>gi|327254038|gb|EGE65667.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_7v]
          Length = 432

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/349 (18%), Positives = 130/349 (37%), Gaps = 24/349 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           T  Q +A+  IL     +      +Q   GSGKT    + +   ++A     QA+++ P 
Sbjct: 2   TPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQKIDASLFQTQALVLCPT 55

Query: 331 GILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    +++  +      +  + G  P   +R +L+       HII+ T     D 
Sbjct: 56  RELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIVATPGRLLDH 111

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +Q   + L  +          R+     + A   ++  A    +TL+ ++     I+ I+
Sbjct: 112 LQKGTVSLDAL-NMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAITAIS 170

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSV 503
            +   R P+   I   + +   IE+     S   K   +   +   +        N +  
Sbjct: 171 GR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 228

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +           S   +HG +   D++  +  F NG+ ++L+AT V   G+D+    ++
Sbjct: 229 CQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 288

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 289 VNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 336


>gi|313202644|ref|YP_004041301.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312441960|gb|ADQ78316.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 621

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 140/369 (37%), Gaps = 41/369 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           +  + +  P   QE  I  +L+          +     G+GKT    + +   ++AG   
Sbjct: 16  IEELGYAQPMPVQEKTIPFMLE-----QTADLVALAQTGTGKTAAFGLPVLNMIDAGRKQ 70

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++AP   L  Q    +K Y++N   + +  + G      + + L+        II+
Sbjct: 71  VQALVLAPTRELCIQIANDLKGYSKNMRGMRIVPVYGGEDIRTQLRQLDTA----PQIIV 126

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
            T     D I+  K        L+L   DE    G ++ ++   + T             
Sbjct: 127 ATPGRLIDLIERGKIELGAIDFLVLDEADEMLNMGFKEDIETILERTPE---------TR 177

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           RT++ ++    +I+ I ++        T +   N   E +E +   +S+ ++ Y +  +I
Sbjct: 178 RTMLFSATMPKEIANIAKRYMKNYEEIT-VGTKNAGSENVEHIYY-VSQARQRYLVLKRI 235

Query: 493 EEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            +             R   +       H   +   +HG +S   +++VM  F+    +LL
Sbjct: 236 VDLNPDIYGIVFCRTRQETKEVADKLMHDGYNADALHGDLSQAQRDNVMQKFRIRNIQLL 295

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+DV D + +I  N         H+  GR GR  +    + + H        
Sbjct: 296 VATDVAARGLDVSDLTHVINYNLPDDVEVYTHR-SGRTGRANKKGIAVSIIHSKERFKIK 354

Query: 606 TRLSVLKNT 614
               +L+ T
Sbjct: 355 DIERMLRKT 363


>gi|293399873|ref|ZP_06644019.1| ATP-dependent RNA helicase DbpA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306273|gb|EFE47516.1| ATP-dependent RNA helicase DbpA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 477

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 138/370 (37%), Gaps = 38/370 (10%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPIG 331
             QE  I +IL+          I++   GSGKT    I +   +   E   QA+I+ P  
Sbjct: 26  PIQEQVIPEILKGRDV------IVRSRTGSGKTASFAIPIVQELIWEEREPQAIILTPTR 79

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ 391
            LA Q  E         +I    I G  P   + + L++    +AH+++GT     D ++
Sbjct: 80  ELALQIKEDFDNIGAYRRIKTVAIFGKQPYKFQIQDLKQ----RAHVVVGTPGRILDHLE 135

Query: 392 YYKLILVIV--------DEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIP--RTLVLTS 439
              L    +        DE    G  +  +             L +AT     + L    
Sbjct: 136 RETLKTGHIRYVIIDEADEMLNMGFIESVQSIFNYFPGNKITCLFSATMPQPIQELAEGF 195

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
           + +  +  ++E+      I      +    ++    +++  E   +  I  + +E     
Sbjct: 196 MKEPKLITLSEETTVNAAITHYAYEVKEKQKLSFLKQLLCKEQPASCIIFARTQE----G 251

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +++ E   +L       +  +HG M   D+   +  FK G  ++L+AT V   GIDV D
Sbjct: 252 VKTICEELYALDMC----VDKLHGGMLQEDRIGNIRDFKKGKIRILVATDVAARGIDVQD 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            S II  +  +     LH++ GR GR       I   +     +   +  + +       
Sbjct: 308 ISHIINYDMPNQKETYLHRI-GRTGRQSASGVAITFINE---YDGERKAELEEYLGYPLE 363

Query: 620 IAEEDLKQRK 629
           I E+D + RK
Sbjct: 364 IREKD-EVRK 372


>gi|209809436|ref|YP_002264974.1| ATP-dependent RNA helicase [Aliivibrio salmonicida LFI1238]
 gi|208010998|emb|CAQ81411.1| ATP-dependent RNA helicase [Aliivibrio salmonicida LFI1238]
          Length = 450

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 136/374 (36%), Gaps = 27/374 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
            PT+ Q  A+   +           +     GSGKTL  ++ M               +A
Sbjct: 28  KPTEIQRKAVPVAMAGKDV------LASSKTGSGKTLAFVLPMLHKSLKSKSFSKNDPRA 81

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI+AP   LA+Q Y  ++           +ITG      +  AL +        I+ T  
Sbjct: 82  VILAPTRELAKQVYMHLRAMLGGLTYDAALITGGENFNDQVNALRKF----PKFIVATPG 137

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D +++  L L  ++        + L L        +         +TL+ ++  D +
Sbjct: 138 RLADHLEHQSLFLNGLEMLILDEADRMLDLGFAEHLQKIHAAANHRRRQTLMFSATLDHE 197

Query: 445 -ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--- 500
            ++K          + +V +  ++  ++ +   +      K   +   IE +K       
Sbjct: 198 AVTKFAGNMLDNPKVVSVGLSTDQHADITQSFYLCDHLDHKQALLDKIIETEKYFQIMIF 257

Query: 501 ---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              R+  +R   L          + G M+   + ++M  F+    K+L+ T V   G+D+
Sbjct: 258 TATRADTDRLTDLLNERKLKAVALSGDMNQTARNNIMSQFERRAHKILVTTDVASRGLDL 317

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDG 617
              + +I  +        +H++ GR GR  +  + I L  P     S+ R+      +  
Sbjct: 318 TSVTHVINFDMPKHMEEYVHRV-GRTGRAGKKGTAISLVGPK-DWESFKRIETFLQQDLA 375

Query: 618 FLIAEEDLKQRKEG 631
           F   E DLK + +G
Sbjct: 376 FSEFE-DLKGKFKG 388


>gi|171680181|ref|XP_001905036.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939717|emb|CAP64943.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1221

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 136/391 (34%), Gaps = 47/391 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------ 318
           +  + +  PT  Q  A+  I+           I     GSGKT+   + M   +      
Sbjct: 595 IEGLGYEKPTPIQMQALPVIMSGRDV------IGVAKTGSGKTMAFALPMLRHIKDQDPV 648

Query: 319 --EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
             + G  A+IM P   L  Q Y  +  +T+  ++      G      +   L+R     A
Sbjct: 649 SGDDGPIALIMTPTRELCTQIYTDLLPFTKVLKLRAVAAYGGNAIKDQIAELKR----GA 704

Query: 377 HIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTA 428
            II+ T     D +           +   +++DE  R           K           
Sbjct: 705 EIIVATPGRMIDLLAANSGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVR----- 759

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  +T++ ++     I  +T+K   R P++  +   + +   I ++  ++ E KK   +
Sbjct: 760 -PDRQTILFSATMPRIIDALTKK-VLRDPVEITVGGRSVVAPEITQVVEIIDESKKFVRL 817

Query: 489 CPQIEEKKESNFR-------SVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFK 538
              + E    +            E+ + L             IHG     D+ S +  FK
Sbjct: 818 LELLGELYADDDDVRALIFVERQEKTDDLLRELLRRGYGCMSIHGGKDQEDRNSTISDFK 877

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G C +LIAT+V   G+DV    ++I  +  +     +H+  GR GR     + +     
Sbjct: 878 KGVCPILIATSVAARGLDVKQLKLVINYDVPNHLEDYVHR-AGRTGRAGNTGTAVTFITE 936

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
                +      L+    G  + E   + RK
Sbjct: 937 EQENCAPGVAKALEQ--SGQPVPERLNEMRK 965


>gi|149240601|ref|XP_001526175.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013500|sp|A5DZE6|DED1_LODEL RecName: Full=ATP-dependent RNA helicase DED1
 gi|146450298|gb|EDK44554.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 664

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/377 (16%), Positives = 133/377 (35%), Gaps = 51/377 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA-AVEAGG-------- 322
            PT  Q+ ++  +            +     GSGKT   L  + + +   G         
Sbjct: 197 KPTPVQKYSVPIVAAGRD------LMACAQTGSGKTGGFLFPVLSESYMNGPAPIPESTG 250

Query: 323 ---------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                      ++MAP   L  Q Y+  KK+   + +   ++ G     ++ + L+R   
Sbjct: 251 AFSSHKVYPTILVMAPTRELVSQIYDESKKFAYRSWVRPCVVYGGADIGNQIRQLDR--- 307

Query: 374 GQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ-QRLKLTQKATAPHVL 424
               +++ T    +D ++  +        L+L   D     G + Q   + Q+   P V 
Sbjct: 308 -GCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDV- 365

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                   +TL+ ++    DI  +  +   +  I   +  +    E I +  + + + +K
Sbjct: 366 -----QDRQTLMFSATFPRDIQMLA-RDFLKDYIFLSVGRVGSTSENITQKVLYVEDEEK 419

Query: 485 AYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
              I   +    E      +  + + +               IHG  S  ++E  + +FK
Sbjct: 420 KSVILDLLNANSEGLTIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFK 479

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G   +L+AT V   G+D+ + S +I  +        +H++ GR GR   +      ++ 
Sbjct: 480 SGQAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRI-GRTGRAGNVGIATAFFNR 538

Query: 599 PLSKNSYTRLSVLKNTE 615
                    L +L    
Sbjct: 539 NNKNIVKGMLDLLTEAN 555


>gi|297830944|ref|XP_002883354.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329194|gb|EFH59613.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 615

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 131/360 (36%), Gaps = 33/360 (9%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---------EAGGQAV 325
             Q++ ++  +Q          I +   G+GKTL   I +   +             Q +
Sbjct: 145 PIQKAVLEPAMQGRD------MIGRARTGTGKTLAFGIPVIDKIIKFNAKHGRGKNPQCL 198

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA+Q  +  ++   +   I   + G  P   + + L    +    + +GT   
Sbjct: 199 VLAPTRELARQVEKEFRESAPSLDTI--CLYGGTPIGQQMREL----NYGIDVAVGTPGR 252

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D ++   L L  V +        ++     A    ++L       ++++ ++     I
Sbjct: 253 IIDLMKRGALNLSEV-QFVVLDEADQMLQVGFAEDVEIILQKLPEKRQSMMFSATMPSWI 311

Query: 446 SKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEK----KESNF 500
             +T+K         ++   + ++ + I    +      +A  I P + E     K   F
Sbjct: 312 RSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVNEHGKGGKCIVF 371

Query: 501 RSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                  + L      +     +HG +S   +E  +  F++G   +L+AT V   G+DV 
Sbjct: 372 TQTKRDADRLAFGLAKSFKCEALHGDISQAQRERTLAGFRDGNFNILVATDVAARGLDVP 431

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +  ++I     +     +H+  GR GR  +  S IL++       S     + K     F
Sbjct: 432 NVDLVIHYELPNNTETFVHR-TGRTGRAGKKGSAILIHGQE---QSRAVKMIEKEVGSRF 487


>gi|254718344|ref|ZP_05180155.1| DEAD-box ATP dependent DNA helicase [Brucella sp. 83/13]
 gi|265983304|ref|ZP_06096039.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|306839567|ref|ZP_07472373.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
 gi|306842588|ref|ZP_07475237.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
 gi|264661896|gb|EEZ32157.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|306287233|gb|EFM58721.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
 gi|306405353|gb|EFM61626.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
          Length = 626

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 272 SPTKSQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGG 322
           + T  Q + +  + L           ++    GSGKT+   +AMA  +        +AG 
Sbjct: 22  TLTAVQNAVLAPETLAS-------DLLVSAQTGSGKTVAFGLAMANTILEDELRFGDAGA 74

Query: 323 Q-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LA Q    ++    +T   +    G M     R+ALER     +HI++G
Sbjct: 75  PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GSHIVVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D I    L        +L   DE    G ++ L+           L  A    R
Sbjct: 131 TPGRLRDHITRNALDMSQLRVIVLDEADEMLDMGFREDLEFI---------LGEAPEDRR 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I+++ ++        TV    ++  + I+ + + +   ++ + I   + 
Sbjct: 182 TLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHAD-IDYVAMPVPPHERDHAIINTLL 240

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                N       R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +        LH+  GR GR     +C+L+      +++   
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGTCVLVVPFSRRRSAERL 359

Query: 608 LSVLK 612
           L + K
Sbjct: 360 LHMAK 364


>gi|225868917|ref|YP_002744865.1| DEAD box helicase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702193|emb|CAW99913.1| DEAD box helicase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 538

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 127/341 (37%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   +   QA+++AP 
Sbjct: 25  SPIQELTIPLALEGRDV------IGQAQTGTGKTAAFGLPTLNKIRTADNTIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AH+++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALKS----GAHVVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   L L  V        DE    G        +++       LL +AT P P + + + 
Sbjct: 135 KRKALRLDHVETLILDEADEMLNMGFLEDIEAIISRVPDHRQTLLFSATMPAPIKEIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  ++  K      +    + +   ++     +++  +  +   +  +       
Sbjct: 195 FMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVQQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D+ 
Sbjct: 249 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR  +    I    P 
Sbjct: 307 GVTHVYNYDITQDPESYVHRI-GRTGRAGKSGESITFVSPN 346


>gi|254284613|ref|ZP_04959580.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           AM-19226]
 gi|150425398|gb|EDN17174.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           AM-19226]
          Length = 428

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/337 (19%), Positives = 132/337 (39%), Gaps = 30/337 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 44  EPTAIQTLMIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALMLVP 97

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E + +      +    + G + +  ++ AL        +I++ T     D 
Sbjct: 98  TRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALAE----NPNILVATTGRLFDL 153

Query: 390 IQ----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            Q      ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 154 TQSGLSLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTAGVRQTVMCSATFSDD 206

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 207 LKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 266

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S  ++E+ +  FKNG+ ++LIAT ++  GI +  
Sbjct: 267 AKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATDLLARGIHIEQ 326

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             ++I           +H++ GR  R  +    + L 
Sbjct: 327 LPVVINFELPMHAETYVHRV-GRTARAGQQGIAVSLV 362


>gi|331005214|ref|ZP_08328607.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC1989]
 gi|330420957|gb|EGG95230.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC1989]
          Length = 462

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 83/453 (18%), Positives = 157/453 (34%), Gaps = 62/453 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
             T+ Q  ++  ++           I Q   GSGKT    +AM   ++      Q++++ 
Sbjct: 26  EMTEIQAQSLPPMIAGQDV------IAQAKTGSGKTAAFGLAMLNKLQVKRFRVQSLVLC 79

Query: 329 PIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  + I++  +    I V  + G  P   +  +LE      AHI++GT    +
Sbjct: 80  PTRELADQVAKEIRRLGRGIHNIKVLTLCGGAPFGPQIGSLEH----GAHIVVGTPGRIE 135

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPIPRTLVL 437
           + ++   L L  V        D     G Q  L             LL +AT   +  ++
Sbjct: 136 EHLRKGTLRLDDVTTFVLDEADRMLDMGFQPSLDAIVDYLPAKRQTLLFSATYPEQIQLI 195

Query: 438 TSLGDIDISKIT-EKPAGRKPIKTVIIPINRIDEVIERLKVVL--SEGKKAYWICPQIEE 494
                 +  ++T E       I+     +       E L+++L       A   C     
Sbjct: 196 AKRIMHEPIRVTVETAHDDSSIEQHFYALEDGRSRTEALQLLLLTYRPNSAVVFCNT--- 252

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R   E  + L     +++A+ +G M    ++  +  F N +  +L+AT V   G
Sbjct: 253 -----KRETQEVADELARMGFAAVAL-NGDMEQKMRDQTLVRFANNSASILVATDVAARG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN- 613
           +D+ D   +             H++ GR GR         LY              L   
Sbjct: 307 LDIDDLDAVFNYQLSREIDVHTHRI-GRTGRAGSKGHAFTLYTSKERYKVEMLEKQLSCV 365

Query: 614 ------------TEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLIAQPELH 652
                        E  +  +   L+           G+I+G    + G+    + +  + 
Sbjct: 366 VEPSPLPNVSVLNEPAYKPSMSTLQIDGGKKQKVRPGDIVGALTGEGGITGKQVGKIHVF 425

Query: 653 D--SLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           D  + + + R + K  L +  +   ++G+S R+
Sbjct: 426 DNTAYVAVERSEVKTALHK-IERGKLKGRSFRV 457


>gi|326534262|dbj|BAJ89481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 144/398 (36%), Gaps = 47/398 (11%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------GQAV 325
             Q + ++  +Q          I +   G+GKTL   I +   +              A+
Sbjct: 112 PIQRAVLEPAMQGKD------MIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAI 165

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+AP   LA+Q  +  ++      +    + G +P + + + L    +    +++GT   
Sbjct: 166 ILAPTRELARQVEKEFRESA---PLDTLCVYGGVPISQQMRTL----NYGVDVVVGTPGR 218

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D ++   L L  +         Q L       A  V++       ++++ ++     I
Sbjct: 219 VIDLLRRGVLNLSEIQFMVLDEADQMLA-VGFDEAVEVIMEKLPQNRQSMLFSATMPSWI 277

Query: 446 SKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEK----KESNF 500
            K+T +      I  ++     ++ E I    +V     K+  + P I+E     K   F
Sbjct: 278 RKLTNQYLKDPVIIDLVGDSEQKLPEGISLYSIVSENYGKSSILGPLIKEHADGGKCIVF 337

Query: 501 RSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                  + L      S     +HG +S   +E  +  F++G   +L+AT V   G+D+ 
Sbjct: 338 TQTKREADRLAYAMGRSYACQALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIP 397

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL------- 611
           +  +++     +     +H+  GR  R  +    IL+Y    S+        +       
Sbjct: 398 NVDLVVHYEIPNSSELFVHR-SGRTARAGKKGIAILMYTYEQSRTVKGIEQDIGCRFTEL 456

Query: 612 ---KNTEDGFLIA--EEDLKQRKEGEILGIKQSGMPKF 644
                T++   +     D + R     +G ++SG   F
Sbjct: 457 PKVAATDEAAELFNVMRDTRSRS----VGTRRSGGSSF 490


>gi|330984017|gb|EGH82120.1| RecG-like helicase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 777

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 121/544 (22%), Positives = 206/544 (37%), Gaps = 68/544 (12%)

Query: 30  IINCGNANETRFIDLLFYHPSSFIDRH----YRPKISEISEER--IVTIT-GYISQHSSF 82
           + + G         LL   P  + D        P I  +        ++    ++  +  
Sbjct: 10  MTDLGKIGIEDPWALLLNVPKHYDDFTVPLKSVPAIMRLEPGTSFYASLKLVSVATSAEI 69

Query: 83  QLQKRRP-----------YKILLNDGTGEITLLFFYRKTEM-LKNVFFEGRKITVTGKI- 129
             QK+               I L DG   +  + F R     +      G+ I V+GKI 
Sbjct: 70  DAQKKANGQPAREGTGEYVNIELTDGMRSLKAMVFGRVKPWEMIRKEAIGQIIHVSGKIG 129

Query: 130 --KKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLSVDLFKK---------IIVEA 178
             K+      + +   +  + ++           + TG  V    K          + + 
Sbjct: 130 LDKRNPQYKTIKNLEIVPSSDRNRIVSRYNGKDGVITGNRVADLTKTSLLHFADEAVDQI 189

Query: 179 LSRLPVLPEWIEKDLLQKKSFP--SIAEAFNIIHNPRKAKDFEWTSPARERL-AYDELLA 235
           L+ + V PE I   ++Q    P   +      +H PR  +D E    +  R+ AY  +  
Sbjct: 190 LNSMGV-PEQI---VMQHCRIPFNDLKHLLMTLHIPRTPQDLERAMLSARRMNAYYGIRK 245

Query: 236 GQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRML 295
            Q A        K      I V+  + ++++   PF+PTK Q  AI DI+ D++    M 
Sbjct: 246 AQNAT-----TRKPVPESAIPVDRDLIRQLVEQHPFTPTKDQRQAIWDIICDLANDVPMD 300

Query: 296 RILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           R+L  DVG+GKT+   I  A A   G   VI+ P   LA Q  + I+ +    QI V ++
Sbjct: 301 RLLSADVGNGKTMAYGIPAAYAASNGKNVVILLPTEPLAGQVEKNIRTW--YPQINVHLV 358

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALF--QDSIQYYKLILVIVDEQHRFGVQQRLK 413
           T    Q+            Q  +++GT A+    +    +K+   + DEQ + G  QR  
Sbjct: 359 TAGFTQSVE----------QGSVLVGTTAILAWLEKHPEWKVDFAVTDEQQKMGTVQRES 408

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII--PINRIDEV 471
           L    T  H+L  TATPIPRT+     G+  I+ I + P   K I T ++   +      
Sbjct: 409 LNNLGT--HILEATATPIPRTMAQALFGNKKITLIDDCPV-VKKISTKLVGNTLAEKRTA 465

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRM 525
           ++ L   +++G +   I P + EK           +   E+  S+ +     +  I    
Sbjct: 466 MDILYQTVADGGRVAVIYPLVAEKMAYVYHAKVETQKEAEKIGSVFKKLNFQVKSIKSAA 525

Query: 526 SDID 529
              +
Sbjct: 526 DSDE 529



 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 7/189 (3%)

Query: 470 EVIERLKVVLSEGKKAYWIC--PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
            +++R +  L E  +          E+    N +++++      +   + +A+IHGR   
Sbjct: 555 RLLKRFERALGEHCRVLEFLGERMDEDLALKNKKTIIQGAEKWEKIKPNRVAVIHGRSKR 614

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
            +K  ++D    G   +L+ATT+IE+GID+ D   + + +A++ G   LHQLRGRV R  
Sbjct: 615 DEKVEIIDLMNRGDADVLLATTLIEIGIDIADLRALAVIDADYLGAYTLHQLRGRVARNG 674

Query: 588 EISSCILLYHPP---LSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEIL--GIKQSGMP 642
              + +++   P   L   +  RL++L     G  IA  D++QR  G +   G  Q G  
Sbjct: 675 GEGAFVMMASAPLDELDDKALDRLNLLVKFTRGSDIALHDMEQRGFGNLDAGGKAQKGFD 734

Query: 643 KFLIAQPEL 651
             L AQ +L
Sbjct: 735 DGLFAQLKL 743


>gi|328769192|gb|EGF79236.1| hypothetical protein BATDEDRAFT_35392 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 647

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 62/379 (16%), Positives = 128/379 (33%), Gaps = 52/379 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGGQA-------- 324
           T  Q  ++  +            +     GSGKT   L+ +       G           
Sbjct: 200 TPVQRYSVAIVTAGRD------LMACAQTGSGKTAAFLLPILSQNFSDGATVSDTPTDRR 253

Query: 325 -------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                  +I+AP   LA Q YE  KK+   + +   +  G  P + + + LER       
Sbjct: 254 SKILPISLILAPTRELAIQIYEESKKFAYRSWVRPCVAYGGTPISDQLRDLER----GCQ 309

Query: 378 IIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ----QRLKLTQKATAPHVLL 425
           +++ T     D ++  +        L+L   D     G +    Q ++     T    L+
Sbjct: 310 LLVATPGRLVDLMERGRVSLASIRYLVLDEADRMLDMGFEPQIRQIVQQADMPTDRQTLM 369

Query: 426 MTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE------VIERLKV 477
            +AT     + L    L D     +    +  + I   I  +  +D+      ++     
Sbjct: 370 FSATFPRNIQMLARDFLHDYVFIAVGRVGSTSENITQNIEMVEDVDKRSVLLDILATDAG 429

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           +  E          +        +   +   +           IHG  +  ++E  + SF
Sbjct: 430 IAQESPDPAANLTLV----FVETKRGADMLCNFLIDQRFPATAIHGDRTQREREFALQSF 485

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           ++G   +L+AT V   G+D+ + + ++  +        +H++ GR GR   I      ++
Sbjct: 486 RSGRTPVLVATAVAARGLDIPNVTHVVNFDLPSDIDDYVHRI-GRTGRAGNIGKATAFFN 544

Query: 598 PPLSK-NSYTRLSVLKNTE 615
              ++      + +L+   
Sbjct: 545 MEQNRGIVKELVEILQEAN 563


>gi|319762158|ref|YP_004126095.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|317116719|gb|ADU99207.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           BC]
          Length = 564

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 132/364 (36%), Gaps = 42/364 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q  AI  +L           +     G+GKT    + M   +  G           
Sbjct: 24  PTPIQAQAIPAVLAGHD------LLAGAQTGTGKTAAFTLPMLHRLAQGQAPTSRFGGRG 77

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+++ P   LA Q  E ++ Y ++  I   +I G +    + + ++R       +++ 
Sbjct: 78  VRALVLTPTRELAAQVEESVRTYGKHLDIKSTVIFGGVGMNPQIERIKR----GVDVLVA 133

Query: 382 THALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D      I   ++ ++++DE  R      +   +K      +L       ++L+
Sbjct: 134 TPGRLLDLQQQGFIDLSQVEILVLDEADRMLDMGFIHDVKK------VLALLPKAKQSLL 187

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I ++        P    + P N   + I ++   +  GKK   +   I+E  
Sbjct: 188 FSATFSDEIRELAA-GLLNDPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHIIQEHD 246

Query: 497 ESNFRSVVER-------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            S                  L +H   ++A+ HG  S   +   ++ FK+G  + L+AT 
Sbjct: 247 WSQVLVFTRTKFGANNVAEYLTKHGVQAMAL-HGNKSQSARTQALEGFKSGQIRALVATD 305

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   GID+ D   ++     +     +H++ GR GR  +    + L              
Sbjct: 306 IAARGIDIDDLPHVVNYEIPNVPEDYVHRI-GRTGRAGKEGQAVSLVCMDEEGFMMEIER 364

Query: 610 VLKN 613
             K 
Sbjct: 365 FTKQ 368


>gi|120602237|ref|YP_966637.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           vulgaris DP4]
 gi|120562466|gb|ABM28210.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
          Length = 462

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/371 (18%), Positives = 133/371 (35%), Gaps = 43/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ----AVIM 327
            PT  Q  AI   L           +     G+GKT   ++ M   +  G +    A+++
Sbjct: 23  QPTPVQRGAIPPALAGEDV------LALAATGTGKTAAFVLPMLQRLMDGPRGAVRALVV 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA+Q ++ +++    +++    I G +    +   L         +++G      
Sbjct: 77  APTRELAEQTHDHVRRLGSMSRLRSTTIYGGVGVVAQALRLRA----GVEVVVGCPGRLL 132

Query: 388 DSIQYYKLILVIV-----DEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIP--RTL 435
           D I+   L L  +     DE        F    R+ L    T    +L +AT     R L
Sbjct: 133 DHIRRGNLDLSSLEVLVLDEGDSLFDLGFLADVRMLLGMVPTTCQRMLFSATMPDAVRVL 192

Query: 436 VLTSLGDIDISKITE-KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
              +L      ++   +PA         +P +    +++       EG    ++      
Sbjct: 193 AAEALRQPVTVQVDAVQPASTVHHALYPVPAHLRTPLLKTFLRSGPEGSVVVFV------ 246

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R    R     ++   S+  + G++S   + + ++ F++G   +L+AT V   G
Sbjct: 247 ----RTRHGARRLWQQLDNVGFSVTCLQGKLSQRRRLAALEGFRDGRYDVLVATDVAARG 302

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+   + ++  +      A +H++ GR GR     + +    P            L   
Sbjct: 303 LDISQVTHVVNYDVPSTADAYIHRV-GRTGRAARNGTAMTFVTPADEAQVRNIERAL--- 358

Query: 615 EDGFLIAEEDL 625
             G +I  E L
Sbjct: 359 --GTVIPRERL 367


>gi|254457791|ref|ZP_05071219.1| dead/deah box helicase domain protein [Campylobacterales bacterium
           GD 1]
 gi|207086583|gb|EDZ63867.1| dead/deah box helicase domain protein [Campylobacterales bacterium
           GD 1]
          Length = 453

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 154/429 (35%), Gaps = 43/429 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           + +  ++   +        T  Q  A+  IL           I Q   GSGKT    I +
Sbjct: 6   LPLSKEMLHNLEEIGYKEMTPIQAEALPHILDGKDV------IAQAKTGSGKTAAFGIGL 59

Query: 315 AAAVEAGG---QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALER 370
              ++      Q++I+ P   LA Q  + ++   + T  + +  + G      +  +L  
Sbjct: 60  LTKLQVKKFRVQSLILCPTRELADQVAKELRMLARATHNVKILTLCGGAAFGPQLGSL-- 117

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
                AHII+GT       ++   L L  + E        R+     +   + +L     
Sbjct: 118 --SHGAHIIVGTPGRILKHLKKATLSLEDL-EMLVLDEADRMLDMGFSEEINEVLSFTKK 174

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +TL+ ++    +I  I+ K    + +          + + ER    +++ +K   I  
Sbjct: 175 RKQTLLFSATYTDEIMDIS-KNLQHEAVSVKTTSTETANNITERF-YEVNDHQKLDTIVN 232

Query: 491 QIEEKKESNFRSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +   K  N             L E+          IHG +   ++  V+  F N +C +
Sbjct: 233 ILSNFKPENVIIFTNTKIEAKELAENLLKKKIDALAIHGDLEQYERNDVLVQFANRSCPV 292

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+D+ + S++I  +  H      H++ GR GR  +      L+    +  +
Sbjct: 293 LIATDVAARGLDIKEMSMVINYDLPHGDETYTHRI-GRTGRAGQDGLAFTLFSQYEADKA 351

Query: 605 YTRLSVLKNTED--------GF--LIAEEDLKQRK-------EGEILG--IKQSGMPKFL 645
           Y   +  +  ED        GF        L            G++LG     +G+    
Sbjct: 352 YEYKNETRLFEDAGELKTVNGFEMKPQYITLVIEGGKKDKVRAGDLLGALTGDAGLQGSS 411

Query: 646 IAQPELHDS 654
           I + ++++ 
Sbjct: 412 IGKIDIYER 420


>gi|195155931|ref|XP_002018854.1| GL26027 [Drosophila persimilis]
 gi|194115007|gb|EDW37050.1| GL26027 [Drosophila persimilis]
          Length = 578

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 132/368 (35%), Gaps = 49/368 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-------VEAGG-QAV 325
           T  Q+ AI  I            +     GSGKT   L+ +          +E G  QAV
Sbjct: 186 TPIQKVAIPVIAAGRD------LMACAQTGSGKTAAFLLPILNLLLNDAVDLEIGKPQAV 239

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I++P   LA Q Y   +K++  + + + I+ G     ++ +++        H++I T   
Sbjct: 240 IVSPTRELAIQIYHEARKFSHESYLKISILYGGTSVKYQNESIMM----GCHLLIATPGR 295

Query: 386 FQDSIQY--------YKLILVIVDEQHRFGV----QQRLKLTQKATAPHVLLMTATPIP- 432
             D ++           L++   D     G     ++ +           L+ +AT    
Sbjct: 296 LLDFVERAFITFDDTRFLVMDEADRMLDMGFSESMRKIVTHCTMRAQHQTLMFSATFPQE 355

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI---NRIDEVIERLKVVLSEGKKAYWI 488
            + +    L +     I         +K  I  +   N+  ++I+ LK   ++G   +  
Sbjct: 356 IQRMAGEFLNNYIFVTIGVVGGACSDVKQTIHEVTKYNKRRKLIDILK-ESADGTIVFV- 413

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   S           IHG      +E  +  FK G  K+LIAT
Sbjct: 414 ----------ETKRGADFLASYLSEAEHPTTSIHGDRLQSQREQALRDFKTGKMKVLIAT 463

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTR 607
           +V   G+D+ +   ++  +        +H++ GR GR          + P   S  +   
Sbjct: 464 SVASRGLDIKNVKHVVNYDMPKTIDDYVHRI-GRTGRVGNNGRATSFFDPDQDSALASDL 522

Query: 608 LSVLKNTE 615
           + +L+ ++
Sbjct: 523 VKILEGSD 530


>gi|156934713|ref|YP_001438629.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532967|gb|ABU77793.1| hypothetical protein ESA_02548 [Cronobacter sakazakii ATCC BAA-894]
          Length = 474

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 129/361 (35%), Gaps = 38/361 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q  AI  +L           +     G+GKT    + +   + A           
Sbjct: 23  EPTPIQRQAIPVVLSGKD------LMASAQTGTGKTAGFTLPLLQRLTANQPHPKGRRPV 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E +++Y++   I   ++ G +    +   L     G   ++I T
Sbjct: 77  RALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKLR----GGVDVLIAT 132

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D     +++  ++ ++++DE  R      +           +L    P  + L+ 
Sbjct: 133 PGRLLDLEHQNAVKLDQVEVLVLDEADRMLDMGFIHDI------RRVLAKLPPKRQNLLF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    DI  + EK     P +  +   N   E + +    + + +K   +   I +   
Sbjct: 187 SATFSDDIKSLAEK-LLHNPEEVEVARRNTASEQVTQHVHFVDKKRKRELLSYLIGDGNW 245

Query: 498 SN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F       N L E         A IHG  S   +   +  FK G  ++L+AT + 
Sbjct: 246 QQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ +   ++     +     +H++ GR GR       + L      K       +L
Sbjct: 306 ARGLDIEELPHVVNYELPNVPEDYVHRI-GRTGRAAATGEALSLVCVDEHKLLRDIERLL 364

Query: 612 K 612
           K
Sbjct: 365 K 365


>gi|148245005|ref|YP_001219699.1| ATP-dependent RNA helicase DbpA [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326832|dbj|BAF61975.1| ATP-dependent RNA helicase DbpA [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 462

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 137/348 (39%), Gaps = 24/348 (6%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + +   T  Q+ ++  IL           I QG  GSGKT+   + +   ++     
Sbjct: 19  LTILGYDLMTPIQKLSLPVILSGKDV------IGQGKTGSGKTVAFGLGLLQKLDVKLFK 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    I+K  +    I V ++ G M    +  +L        H+++
Sbjct: 73  LQSIVLCPTRELANQVAVEIQKLARVINNIKVVVLCGGMSFGLQIDSLRH----GVHVVV 128

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           GT    ++ ++   L L  +          R+       +   ++ T     +TL+ ++ 
Sbjct: 129 GTPGRIEEHLRKGTLKLSYI-NTLVLDEADRMLDMGFQESVDNIIETMPTNRQTLLFSAT 187

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ IT++   R PI   +  IN    + +    + ++ ++   +   + + K    
Sbjct: 188 CLDTITNITQR-VMRSPIMVKVPLINERSTIKQYFYKINTDNERMMALRLLLAKYKPESS 246

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   ++  +   ++      IHG +   +++  +  F N +  +L+AT V   G
Sbjct: 247 LVFCNTKRDAQKVANELVYYGFYALAIHGDLDQRERDQALIRFSNKSVSILVATDVAARG 306

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           +D+    ++I  +  H     +H++ GR GR         LY    + 
Sbjct: 307 LDIDSLDMVINFDIAHDDQVHIHRI-GRTGRAGHFGIACTLYSNRETY 353


>gi|294634522|ref|ZP_06713057.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda ATCC 23685]
 gi|291092036|gb|EFE24597.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda ATCC 23685]
          Length = 643

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 136/370 (36%), Gaps = 44/370 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q + I  +L           +     GSGKT    + +   ++     
Sbjct: 26  LNDLGYEKPSPIQAACIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLNNIDPSLKA 79

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   I V  + G      R     R       I++
Sbjct: 80  PQVLVLAPTRELAVQVAEAMTDFSKHLHGINVVALYGG----QRYDVQLRALRQGPQIVV 135

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++           L+L   DE  R G  + +   + Q        L +AT 
Sbjct: 136 GTPGRLLDHLKRGTLSLASLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATM 195

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   T +  + + + ++  L+    +   
Sbjct: 196 PEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWT-VYGMRKNEALVRFLEAEDFDAAI 254

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +               + +E   +L  +  SS A+ +G M+   +E  ++  K+G   +
Sbjct: 255 IFV----------RTKNATLEVAEALERNGYSSAAL-NGDMNQALREQTLERLKDGRLDI 303

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 304 LIATDVAARGLDVERISLVVNYDIPMDAESYVHRI-GRTGRAGRAGRALLFVDNRERRLL 362

Query: 605 YTRLSVLKNT 614
                 +K T
Sbjct: 363 RNIERTMKLT 372


>gi|190405005|gb|EDV08272.1| eukaryotic initiation factor 4A-12 [Saccharomyces cerevisiae
           RM11-1a]
          Length = 399

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 152/395 (38%), Gaps = 48/395 (12%)

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           +++D     ++     +K         +N++  + + I      +P+  Q  AI  I+  
Sbjct: 1   MSFDREEDQKLKFKTSKKLKVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG 60

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY 344
                    I Q   G+GKT    I +  A++      QA+I++P   LA Q  + +K  
Sbjct: 61  KDV------IAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNL 114

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVI 399
                +    ITG          L+++       + GT     D I+        + +++
Sbjct: 115 GDYMNVNAFAITGGKTLKD---DLKKMQKHGCQAVSGTPGRVLDMIKRQMLQTRNVQMLV 171

Query: 400 VDEQHRF-----GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           +DE         G +Q++         +          + +V+++  + DI ++T K   
Sbjct: 172 LDEADELLSETLGFKQQIYDIFAKLPKNC---------QVVVVSATMNKDILEVTRKFMN 222

Query: 455 RKPIKTVIIPINRIDEV-IERLKVVLSEGKKAYWICPQIEEKKE----------SNFRSV 503
             P+K ++    + DE+ +E +K  +    K  W    + +  +           N +  
Sbjct: 223 -DPVKILV----KRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKK 277

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V+  +        ++  +HG M   +++ VM+ F+ G  ++LI+T V   GIDV   S++
Sbjct: 278 VDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLV 337

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           I  +        +H++ GR GR       I     
Sbjct: 338 INYDLPEIIENYIHRI-GRSGRFGRKGVAINFITK 371


>gi|119945503|ref|YP_943183.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119864107|gb|ABM03584.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 433

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 119/349 (34%), Gaps = 41/349 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
            T  Q+ AI  I            +     G+GKT    + +   +              
Sbjct: 24  LTPIQQQAIPIIRSG------SDLLASAQTGTGKTAAFTLPILDILAKNANEKPTTNTTI 77

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q    +K+Y+Q   +   +++G      + K L+        +++ T
Sbjct: 78  KALILTPTRELAAQVAANVKEYSQFLPLTSGVVSGGRSMDSQTKMLKV----GVDVLVAT 133

Query: 383 HALFQDSIQYYKLILVIV-----DEQHRFGV-----QQRLKLTQKATAPHVLLMTAT--P 430
                + +    + L  V     DE  R          +  +         L+ +AT   
Sbjct: 134 PGRLLEHLTLRNVDLSHVKYLTLDEADRMLDLGFLTDIQKLMEAIKQKHQTLMFSATFSN 193

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +TL    L      +I+ + +    +K  +  ++   +     +++  +  K   +  
Sbjct: 194 KVKTLAKQILTTPKTLEISPQNSTAGKVKQQVYWVSETRKNELLSELIGVKNWKQVLVFA 253

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
             +E                 +      A+ HG  +   +   +  F  G+ ++L+AT V
Sbjct: 254 GTKESA--------NLLAKELQLDGIKTAVCHGDKTQGARNQAIQKFTEGSVRVLVATDV 305

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
              G+D+ D   ++  +        +H++ GR  R  +  + + L  P 
Sbjct: 306 AARGLDIPDLPYVVNFHLPFLAEDYIHRI-GRTARAGKSGTAVSLVSPK 353


>gi|157156397|ref|YP_001462652.1| ATP-dependent RNA helicase DbpA [Escherichia coli E24377A]
 gi|193062707|ref|ZP_03043801.1| ATP-independent RNA helicase DbpA [Escherichia coli E22]
 gi|194426050|ref|ZP_03058606.1| ATP-independent RNA helicase DbpA [Escherichia coli B171]
 gi|260843691|ref|YP_003221469.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O103:H2 str. 12009]
 gi|260855042|ref|YP_003228933.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O26:H11 str. 11368]
 gi|260867791|ref|YP_003234193.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O111:H- str. 11128]
 gi|300822487|ref|ZP_07102626.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300904996|ref|ZP_07122814.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|301305840|ref|ZP_07211925.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|331667742|ref|ZP_08368606.1| ATP-independent RNA helicase DbpA [Escherichia coli TA271]
 gi|331677132|ref|ZP_08377828.1| ATP-independent RNA helicase DbpA [Escherichia coli H591]
 gi|157078427|gb|ABV18135.1| ATP-independent RNA helicase DbpA [Escherichia coli E24377A]
 gi|192931829|gb|EDV84429.1| ATP-independent RNA helicase DbpA [Escherichia coli E22]
 gi|194416105|gb|EDX32371.1| ATP-independent RNA helicase DbpA [Escherichia coli B171]
 gi|257753691|dbj|BAI25193.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O26:H11 str. 11368]
 gi|257758838|dbj|BAI30335.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O103:H2 str. 12009]
 gi|257764147|dbj|BAI35642.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O111:H- str. 11128]
 gi|300403145|gb|EFJ86683.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300524903|gb|EFK45972.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300838930|gb|EFK66690.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|315254386|gb|EFU34354.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
 gi|323153565|gb|EFZ39816.1| ATP-independent RNA helicase dbpA [Escherichia coli EPECa14]
 gi|323162444|gb|EFZ48296.1| ATP-independent RNA helicase dbpA [Escherichia coli E128010]
 gi|323179693|gb|EFZ65254.1| ATP-independent RNA helicase dbpA [Escherichia coli 1180]
 gi|324117462|gb|EGC11368.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|331065327|gb|EGI37222.1| ATP-independent RNA helicase DbpA [Escherichia coli TA271]
 gi|331075821|gb|EGI47119.1| ATP-independent RNA helicase DbpA [Escherichia coli H591]
          Length = 457

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|110834556|ref|YP_693415.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110647667|emb|CAL17143.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 551

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 136/370 (36%), Gaps = 36/370 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q  AI          +    + Q   G+GKT    + + A ++      Q +I+A
Sbjct: 28  QPSPIQAQAIP------LLLDGHDLLGQAQTGTGKTAAFALPLLARLDPSLREPQMLILA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     +++ ++   + V  I G      + K L     G A +I+GT     
Sbjct: 82  PTRELAIQVATACEEFAKDIKGLQVLPIYGGGEYRTQLKGLR----GGAQVIVGTPGRVM 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL--MTAT--PIPRTL 435
           D +            L+L   DE  R G    +K   + T     L   +AT  P+ R +
Sbjct: 138 DHMDRGSMKLNNLKALVLDEADEMLRMGFIDDVKWVLERTPDDCQLALFSATMPPVIRKV 197

Query: 436 VLTSLGDIDISKITEKPAGR-KPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
               L    + +I    A     I+    P+  ++++    +++ +E   A  +  + + 
Sbjct: 198 ADQHLKQPKLVRIDNGGATTGTTIRQRYWPVAGLNKLDAVCRILEAEEHDAVLVFVRTK- 256

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 ++ +E    L+         ++G +    +E  +   K+    LLIAT V+  G
Sbjct: 257 ------QATLELAEQLNRRGL-RAEALNGDIPQQQREKTVQRLKDKRFDLLIATDVVARG 309

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   + ++  +      A +H++ GR GR       IL               + + +
Sbjct: 310 LDVPRITHVVNYDMPGDPEAYVHRI-GRTGRAGRQGDAILFVARREQHVLRQIERITRQS 368

Query: 615 EDGFLIAEED 624
            +   +   D
Sbjct: 369 IEKMALPSVD 378


>gi|91792246|ref|YP_561897.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714248|gb|ABE54174.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 433

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/395 (17%), Positives = 138/395 (34%), Gaps = 52/395 (13%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQAV 325
           T  Q+ AI  I +          +     G+GKT    + +   +         +  +A+
Sbjct: 25  TPVQQQAIPAIRRGEDV------LASAQTGTGKTAAFALPILQKMHERPMTVQHSNARAL 78

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  + I  Y+++  I V  I G M  A + + L++     A II+ T   
Sbjct: 79  ILTPTRELAAQVADNISAYSKHMNISVLTIYGGMKMATQAQKLKQ----GADIIVATPGR 134

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT--PIPR 433
             + I    L L  V        D     G     +  L         LL +AT     +
Sbjct: 135 LLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKRQNLLFSATFSTAVK 194

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L    L    I    ++      +  V+ P+ +  +     +++ ++  +   +     
Sbjct: 195 KLANDMLDKPKIISADKQNTTAATVSQVVYPVEQRRKRELLSELIGTKNWQQVLVFT--- 251

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R+  ++  +         A++HG  +   +   +  F  G  ++L+AT V   
Sbjct: 252 -----ATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRVLVATEVAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++  +        +H++ GR GR  +    I        +       ++  
Sbjct: 307 GLDIQGLEYVVNYDLPFLAEDYVHRI-GRTGRAGKTGVAISFVSREEERTLADIEKLIGQ 365

Query: 614 -----TEDGFLIAEEDL-----KQRKEGEILGIKQ 638
                T  G+ ++  +L     ++R+     G KQ
Sbjct: 366 KIRRITVPGYEVSSRELLLKTIEKRRS---FGKKQ 397


>gi|320583085|gb|EFW97301.1| ATP-dependent RNA helicase DED1 [Pichia angusta DL-1]
          Length = 2471

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/384 (14%), Positives = 130/384 (33%), Gaps = 61/384 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA------------------ 313
            PT  Q+ +I  +       N    +     GSGKT   L                    
Sbjct: 157 KPTPVQKYSIPIV------ANGRDLMACAQTGSGKTGGFLFPVLSESFKHGPTESSQTDN 210

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                +A   A+++AP   L  Q YE  +K++  + +   ++ G      +   L++   
Sbjct: 211 AFDRRKAHPTALVLAPTRELVSQIYEEARKFSYRSWVRPVVVYGGAEVYLQMDQLKQ--- 267

Query: 374 GQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP---- 421
               +++ T     D ++  K        L+L   D     G + +++   +        
Sbjct: 268 -GCDLLVATPGRLNDLLERGKISLKNIKYLVLDEADRMLDMGFEIQIRHIIQGCDMPPPG 326

Query: 422 --HVLLMTATPIPRTLVLT--SLGDIDISKITEKPAGRKPIKTVIIPINRIDE------V 471
               L+ +AT      ++    L +     +    +  + I   I+ +   ++      +
Sbjct: 327 ERQTLMFSATFPKEIQLMAKDFLHNYIFLSVGRVGSTSENITQRILYVEDDEKKSSLLDI 386

Query: 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
           +   +  L+ G    ++            + + +  +    +       IHG  S  ++E
Sbjct: 387 LTSTEDTLANGLTLIFV----------ETKKMADILSDFLINQDFPATSIHGDRSQYERE 436

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             ++SF+ G   +L+AT V   G+D+ + + ++  +  +     +H++ GR GR      
Sbjct: 437 RALESFRTGRTPILVATAVAARGLDIPNVTHVVNYDLPNDIDDYVHRI-GRTGRAGNTGV 495

Query: 592 CILLYHPPLSKNSYTRLSVLKNTE 615
                +          + +L    
Sbjct: 496 ATAFVNRGNKNVVKDLIEILSEAN 519


>gi|283779149|ref|YP_003369904.1| DEAD/DEAH box helicase domain-containing protein [Pirellula staleyi
           DSM 6068]
 gi|283437602|gb|ADB16044.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
          Length = 598

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 123/344 (35%), Gaps = 29/344 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  AI   +     +           G+GKT    + +   +    +        
Sbjct: 23  EPTAIQLQAIPPAIAGRDLQG------CAQTGTGKTAAFALPLLDRLIKNPRQGKLRGRL 76

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A++++P   LA Q ++ +++Y ++       I G + Q  + K L         ++I 
Sbjct: 77  PRALVLSPTRELAGQIHDSVRRYGRHAMQNSLTIYGGVSQVPQVKGLNAGQ----DVLIA 132

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +Q   + L  + E        R+           ++       +TL+ ++  
Sbjct: 133 TPGRLCDLMQQGYINLSEI-EVFVLDEADRMLDMGFMPDIRRIIAKLPQQKQTLLFSATM 191

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-- 499
             +I K+  +     P++  I P     + I +    +    K   +   ++ ++ +   
Sbjct: 192 PPEIQKLASQ-LLHDPVEINIEPERATADGITQSLYYVPTKHKPELLASVLKREEVTRAV 250

Query: 500 ----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +    +     E     +  IHG  S   ++  + +FKNG  ++L+AT V   G+
Sbjct: 251 VFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHIQVLVATDVAARGL 310

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           DV   S +I  +        +H++ GR GR  +    I      
Sbjct: 311 DVTGVSHVINYDLPMEPETYVHRI-GRTGRAGKSGIAISFCDDE 353


>gi|218676540|ref|YP_002395359.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324808|emb|CAV26511.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 468

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/382 (18%), Positives = 130/382 (34%), Gaps = 50/382 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q   I  +L           I   + GSGKT    + +   +             
Sbjct: 70  QPTPIQAQVIPSVLAGRD------LIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKG 123

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQAH 377
                +I+ P   LA+Q  + +K Y  +    I    + G +    + +AL     G   
Sbjct: 124 NYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALR----GGTD 179

Query: 378 IIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMT 427
           I++ T     D I        +   L+L   D     G  + L   L    +    LL +
Sbjct: 180 ILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFS 239

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAY 486
           AT   +   LT     D  ++  + A    +   +  + +     +    +   E ++A 
Sbjct: 240 ATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQAL 299

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                       N ++  E              + HG      +  +++ FK+G   +LI
Sbjct: 300 IFV---------NAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLI 350

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL-----YHPPLS 601
           AT +   G+D+    ++I  +        +H++ GR GR  E+   + L     YH    
Sbjct: 351 ATDIAARGLDIEKLPVVINFDLPRSPSDYMHRI-GRSGRSGEVGLALSLIDHEDYHHFTI 409

Query: 602 KNSYTRLSVLKNTEDGFLIAEE 623
                ++ + +   +GF + EE
Sbjct: 410 IEKKNKIRLEREQIEGFEVDEE 431


>gi|212528760|ref|XP_002144537.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
 gi|210073935|gb|EEA28022.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
          Length = 503

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/372 (21%), Positives = 145/372 (38%), Gaps = 47/372 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
           +PT  Q +    +            I   + GSGKTL   +     +         +  +
Sbjct: 109 APTSVQSATWPLLFAGRDV------IGIAETGSGKTLAFGLPCVKNMVDSKKKLKPSHPR 162

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AVI+ P   LA Q YE ++ Y     + V  I G + +  +R+AL+  A     I++ T 
Sbjct: 163 AVILTPTRELAMQIYEQLEGYAPRVSVRVTCIFGGVRKDEQREALKDTA-----IVVATP 217

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLT---QKATAPHVLLMTATPIP 432
              +D     +I   K+  +++DE  R    G +Q +K        +     + TAT   
Sbjct: 218 GRLKDLESEGAINLSKVKYLVLDEADRMLDKGFEQDIKDIVAPMPVSRRQTAMFTATWPV 277

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI-------NRIDEVIERLKVVLSEGK 483
             R L  +   D  +  +  KP+      T I  +       ++ + + + L  +  E  
Sbjct: 278 SVRNLANSFTQDPVMVTVGGKPSEDPRANTRIKQVVEVLDGRDKENRLTQILAKLTRESS 337

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +   +   + +K+         R   L +    ++A IHG +S  D+   + SFK+G   
Sbjct: 338 QGKILVFCLYKKEAM-------RIERLIQSRGYAVAGIHGDLSQSDRFKSLASFKSGAVP 390

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+D+     ++           +H++ GR GR       I L+      +
Sbjct: 391 ILVATDVAARGLDIPAVKTVVNVTFPLTIEDYVHRI-GRTGRAGADGHAITLFTENDKAH 449

Query: 604 SYTRLSVLKNTE 615
           S   ++VLK   
Sbjct: 450 SGALINVLKAAN 461


>gi|328781103|ref|XP_394925.4| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Apis
           mellifera]
          Length = 626

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/387 (17%), Positives = 129/387 (33%), Gaps = 47/387 (12%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
              +  +I  +I +     P+  Q  A   +L           I     G+GKTL  L+ 
Sbjct: 218 AFEIYPEILDEIRKQKFVKPSPIQSQAWPILLSGRD------LIGIAQTGTGKTLAFLLP 271

Query: 314 MAAAVE---------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
               +E          G   +IMAP   LA Q  + + KY+ +  I    + G   +  +
Sbjct: 272 ALIHIEGQQIPRVERKGPNVLIMAPTRELALQIEKEVNKYSYH-GIKAVCLYGGGSRKKQ 330

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGV--QQRLKL 414
              +         I+I T     D ++           L+L   D     G   Q R  L
Sbjct: 331 VNVVTE----GVEIVIATPGRLNDLVEAKILNISSITYLVLDEADRMLDMGFEPQIRKTL 386

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV------IIPINRI 468
                    ++ +AT       L      +  ++         + TV      +    + 
Sbjct: 387 LDIRPDRQTVMTSATWPQGVRRLAQSYMKNPIQVFVGSLDLATVHTVMQKVYIVDEEEKT 446

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
           D + E  + +    K   +             ++ V+   S     + +   IHG     
Sbjct: 447 DMMYEFFRKMSPNDKVIIFF----------GKKTKVDDVASDLALQSVNCQSIHGGREQS 496

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
           D+E  ++  K G  ++L+AT V   GID+ D + ++  +        +H++ GR GR   
Sbjct: 497 DREQALEDLKTGEVQILLATDVASRGIDIEDITHVLNYDFPRDIEEYVHRV-GRTGRAGR 555

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNTE 615
               I         ++   +++L+   
Sbjct: 556 SGESITFMTRKDWTHAKDLINILEEAN 582


>gi|325269118|ref|ZP_08135738.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
 gi|324988505|gb|EGC20468.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
          Length = 572

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 129/372 (34%), Gaps = 42/372 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL+          +     G+GKT   L+ + + +  GG        VIM
Sbjct: 25  TPVQEKCIPEILKGKDV------LGVAQTGTGKTAAYLLPVLSKLADGGYPESAINCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ +      +  +        +R     +     A ++I T   F 
Sbjct: 79  SPTRELAQQIDQAMQGFAYYLDGVSCVAVYGGNDGNRYDQELKSLSLGADVVIATPGRFI 138

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVL 437
             I    +        IL   D     G  + +    K    +   ++ +AT   +   L
Sbjct: 139 SHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLPASCQTIMFSATMPKKIEEL 198

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                 +  +I              + +++  E I ++  V  E +K   I    +    
Sbjct: 199 AKTLLKNPVEIK-------------LAVSKPAEKIHQMAYVCYETQKIGIIKDIFKAGDL 245

Query: 498 SNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +  V++  +       +   +H  +    +  VM  FK+G   +L+AT ++
Sbjct: 246 KRVIIFSGSKQKVKQIAASLSRKHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIV 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ D +++I  +  H     +H++ GR  R +     I               + L
Sbjct: 306 ARGIDIDDITMVINYDVPHDAEDYVHRI-GRTARADRDGKAITFVSVDDIYYFQQIEAFL 364

Query: 612 KNTEDGFLIAEE 623
           +   +   + EE
Sbjct: 365 EKEIEKIPLPEE 376


>gi|219115677|ref|XP_002178634.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410369|gb|EEC50299.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 417

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 142/392 (36%), Gaps = 54/392 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--------GQ 323
            P+  Q  +   IL  ++   +   +   + GSGKTL   +   +A+            +
Sbjct: 3   KPSPIQAQSWP-ILTQLNNGRKRDIVGIAETGSGKTLAFALPALSAMSEDTSTRKRRLPR 61

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q  E +K++     I   ++ G +P+  ++  L++        ++ T 
Sbjct: 62  MLVLAPTRELAMQSDEVLKEFGAVVSIKSLVVYGGVPKYEQKNELKK----GVDCVVATP 117

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
              +D IQ           L+L   D     G ++ ++             +     +T 
Sbjct: 118 GRIKDLIQERACDLSAVDYLVLDEADRMLDMGFEEDVRFIISNCK------SKEQGRQTA 171

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVI----------------IPINRIDEVIERLKVVL 479
           + ++     I KI        PI+  +                +  N+    I  +    
Sbjct: 172 MFSATWPAAIQKIAMDYM-VDPIRVYVGFESIVGSNGGGVDDSLSANKRVTQIVEVVEDR 230

Query: 480 SEGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           +   +   I  ++  K+++       ++   ER              IHG  + + + + 
Sbjct: 231 ARDARLRDILRKVHMKRDNRVLVFGLYKKEAERLEYSLRKDGWDCCSIHGNKTQVARTAA 290

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  FK+G+C LLIAT V   G+D+ +   +I           +H++ GR GR  +     
Sbjct: 291 LAQFKDGSCPLLIATDVAARGLDIPNVEAVINFTFPLTIEDYVHRI-GRTGRAGKTGVSY 349

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
             + P    ++     V+K    G  I  EDL
Sbjct: 350 TFFQPGDKSHAGELQQVMKQ--AGQEI-PEDL 378


>gi|168026095|ref|XP_001765568.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683206|gb|EDQ69618.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 127/343 (37%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFTKGLDV------IQQAQSGTGKTATFCSGILQQLDYQLLECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++      Q+ V    G       ++ L+       H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVYD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 172 MLRRNALRADSIKCFVLDEADEMLSRGFKDQIYDIFQLLPQKLQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   KI  K      + IK   + ++R +  ++ L          Y      +   
Sbjct: 232 RKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTKE 386


>gi|331646674|ref|ZP_08347777.1| ATP-independent RNA helicase DbpA [Escherichia coli M605]
 gi|330911207|gb|EGH39717.1| ATP-dependent RNA helicase DbpA [Escherichia coli AA86]
 gi|331045426|gb|EGI17553.1| ATP-independent RNA helicase DbpA [Escherichia coli M605]
          Length = 457

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|261211120|ref|ZP_05925409.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC341]
 gi|260839621|gb|EEX66232.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC341]
          Length = 460

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/366 (21%), Positives = 133/366 (36%), Gaps = 42/366 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + F S T  Q  ++  IL           I QG  GSGKT    + + + +      
Sbjct: 19  LETMGFASMTPIQAQSLPAILNGQDV------IGQGKTGSGKTAAFGLGVLSNLNVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 73  VQALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 128

Query: 381 GTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATP 430
           GT     D +        +   L+L   D     G Q+ L+       T    LL +AT 
Sbjct: 129 GTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLLFSATY 188

Query: 431 I--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN---RIDEVIERLKVVLSEGKKA 485
                 +  +   +  + K+ E       I+     ++     DE +E   ++  +   +
Sbjct: 189 PASIEQIAQSVTRNAMMIKV-EATHDTSSIRQYFYKVDGSAARDEALET-LLLHHQPTSS 246

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
              C    E K           ++LH+   S I + HG M   +++  +  F N +  +L
Sbjct: 247 VVFCNTKREVK--------NVADALHQSGFSVIEL-HGDMEQRERDQALVQFANKSISIL 297

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+DV +   +   +        +H++ GR GR          +    S    
Sbjct: 298 VATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRI-GRTGRAGSKGLAFSFFSDNESYRVA 356

Query: 606 TRLSVL 611
                +
Sbjct: 357 QIDEYM 362


>gi|183600372|ref|ZP_02961865.1| hypothetical protein PROSTU_03938 [Providencia stuartii ATCC 25827]
 gi|188020163|gb|EDU58203.1| hypothetical protein PROSTU_03938 [Providencia stuartii ATCC 25827]
          Length = 622

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 157/414 (37%), Gaps = 50/414 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q+  I  ++           +     GSGKT    + +   ++     
Sbjct: 22  LNDLGYEKPSPIQKQCIPLLMDG------NDVLGMAQTGSGKTAAFSLPLLHNIDPDLKA 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++  ++ V  + G      R     R       +++
Sbjct: 76  PQILVLAPTRELAVQVAEAMGDFSKHMSRVNVVALYGG----QRYDVQLRALRQGPQVVV 131

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++           L+L   DE  R G  + +   ++Q        L +AT 
Sbjct: 132 GTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATM 191

Query: 430 --PIPRTLVLTSLGDIDISK---ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
             PI R          +I     IT +P   +   T +  + + + ++  L+    +   
Sbjct: 192 PEPIRRITRRFMKEPKEIRIQASITTRPDIAQSYWT-VYGMRKNEALVRFLEAEDFDAAI 250

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +               + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +
Sbjct: 251 IFV----------RTKNATLEVAEALERNGYNSAAL-NGDMNQALREQTLERLKDGRLDI 299

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 300 LIATDVAARGLDVDRISLVVNYDIPMDAESYVHRI-GRTGRAGRAGRALLFVENRERRLL 358

Query: 605 YTRLSVLKNTEDGFLIAEEDL--KQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
                 +K T     + +  L  ++R+      I+Q    +F  +  + + +LL
Sbjct: 359 RNVERTMKLTIPEVELPDSQLLSERRQAKFAEKIQQ----QFESSDLDQYRALL 408


>gi|238793027|ref|ZP_04636656.1| DEAD/DEAH box helicase domain protein [Yersinia intermedia ATCC
           29909]
 gi|238727627|gb|EEQ19152.1| DEAD/DEAH box helicase domain protein [Yersinia intermedia ATCC
           29909]
          Length = 667

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 82/452 (18%), Positives = 152/452 (33%), Gaps = 74/452 (16%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++A    
Sbjct: 22  LTDLGYEKPSPIQLECIPHLLNGRDV------LGMAQTGSGKTAAFGLPLLHNIKAELKS 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  + +  ++++   + V  + G      R     R       I++
Sbjct: 76  PQVLVLAPTRELAIQVAQALSDFSKHINGVNVVALYGG----QRYDVQLRALRQGPQIVV 131

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   L Q        L +AT 
Sbjct: 132 GTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTALFSATM 191

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +    V     + + ++  L+    +   
Sbjct: 192 PDAIRRITRRFMKDPQEVRIQSSVTTRPDISQSFWRVGGGYRKNEALVRFLESEDFDAAI 251

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +              ++         E    + A ++G M+   +E  ++  K+G   +
Sbjct: 252 IFV-----------RTKNGTLEVAEALESSGYNCAALNGDMNQSLREQTLNRLKDGRLDI 300

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 301 LIATDVAARGLDVDRISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 359

Query: 605 YTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
                 +K T     +           E+LG +                 L + A K  +
Sbjct: 360 QNIERTMKLTIPEVQLPN--------PELLGER----------------RLAQFAAKVGQ 395

Query: 665 HILTQDPDLTSVRGQSIRILLYLYQYNEAFQF 696
            + + D DL        R LL   Q  E F  
Sbjct: 396 QLESSDLDL-------YRALLAKLQPEEEFDL 420


>gi|73748116|ref|YP_307355.1| ATP-dependent RNA helicase, DEAD [Dehalococcoides sp. CBDB1]
 gi|147668820|ref|YP_001213638.1| DEAD/DEAH box helicase domain-containing protein [Dehalococcoides
           sp. BAV1]
 gi|289432193|ref|YP_003462066.1| DEAD/DEAH box helicase [Dehalococcoides sp. GT]
 gi|73659832|emb|CAI82439.1| ATP-dependent RNA helicase, DEAD [Dehalococcoides sp. CBDB1]
 gi|146269768|gb|ABQ16760.1| DEAD/DEAH box helicase domain protein [Dehalococcoides sp. BAV1]
 gi|288945913|gb|ADC73610.1| DEAD/DEAH box helicase domain protein [Dehalococcoides sp. GT]
          Length = 561

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/384 (16%), Positives = 127/384 (33%), Gaps = 31/384 (8%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
             N +  +   +       PT  Q  AI  I+           I     G+GKT    + 
Sbjct: 5   SFNFDPAVMAGVRACGYKEPTPIQAQAIPPIMAGHDV------IGLAQTGTGKTAAYALP 58

Query: 314 MAAAVEAGGQ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
           +   + +  +     +++AP   LA Q  +  +   Q  +I    I G +    + + L 
Sbjct: 59  IIQKMLSTPRGRVRTLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRLR 118

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
                   +++       D I    + +  V E        R+           +L    
Sbjct: 119 S----GVDVVVACPGRLLDHIWRGTIDVCGV-ETLIIDEADRMFDMGFQPDIQSILKCLV 173

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              +TL+ ++    ++ K+T       P+   +    +         V   +  +   + 
Sbjct: 174 QPHQTLLFSATMPPEVRKLT-LETQTNPVTVQVGT--QSPVSSVSHSVYPVKSHQKTPLL 230

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSI-------AIIHGRMSDIDKESVMDSFKNGTC 542
            +I +  E+    +  R     E+    I       A + G +S   + +VM+ F+ G  
Sbjct: 231 LEILKTVETKSVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNF 290

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
           K+L+AT +   G+D+   S +I  +         H++ GR GR +       L       
Sbjct: 291 KILVATDIAARGLDIDHISHVINYDMPDSPEDYTHRI-GRTGRFDRTGQAFSLVTGRDGD 349

Query: 603 NSYTRLSVLKNTE-----DGFLIA 621
                  +L +       DGF  A
Sbjct: 350 MVRDIQRLLSSPIQRLRVDGFDYA 373


>gi|333007298|gb|EGK26780.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-272]
 gi|333019294|gb|EGK38578.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-227]
          Length = 457

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 133/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +    G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTSCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVEQSALSLHGDLDQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|332521202|ref|ZP_08397660.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043295|gb|EGI79492.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 411

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/360 (19%), Positives = 125/360 (34%), Gaps = 40/360 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---------EAGGQ 323
           PT  QE  I  +L      N+   I     G+GKT    + +   +         +   +
Sbjct: 24  PTLIQERTIPLVL------NKKDVIASAQTGTGKTAAFALPILQLLYDKQDAAKNQKKVR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I++P   LA Q  E  + Y   T +   +I G      ++  L +       I+I T 
Sbjct: 78  ALIISPTRELAIQIQENFQDYLIYTNLRSTVIFGGASIEPQKDVLRK----GVDILIATP 133

Query: 384 ALF-----QDSIQYY---KLILVIVDEQHRFGVQQRLKLTQ--KATAPHVLLMTATPIPR 433
                   QD +       L+L   D     G    +K  +        +LL +AT   +
Sbjct: 134 GRLLDLHKQDEVNLDYVETLVLDEADLMLDMGFIDDVKKIERLCPAEKQILLFSATMPYK 193

Query: 434 --TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L  T L +    ++++  +    I   +  + +  + IE    +L    K   I  +
Sbjct: 194 VEQLAKTILNNPKRVEVSQNSSTSTNINQALYYVPK-PKKIELCLHLLRNTVKGKIIIFR 252

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +  V++              IHG  S   ++  ++ FK     +LIAT V 
Sbjct: 253 -------RTKYGVDKLEKTLLRNNYKADSIHGDKSQTLRQEALNRFKKNEVNILIATDVA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ +   +I  +  +     +H++ GR GR                +   T   ++
Sbjct: 306 ARGIDIENVDAVINFDMPNVPETYVHRI-GRTGRAGNTGMAYSFCSADEKEYIKTIQQLI 364


>gi|221487611|gb|EEE25843.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
          Length = 685

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 90/465 (19%), Positives = 159/465 (34%), Gaps = 70/465 (15%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIPINVEGKI--AQKILRN 268
              KDF    P+      +E+ A   A  +    ++ K          G     Q  LR 
Sbjct: 235 PIEKDFYVEHPSVASRTDEEVAAFLEANAMRIDGQEPKPRPVFSFEETGFPTAIQNQLRK 294

Query: 269 IPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------- 320
           + F  PT  Q+      L        M+ I Q   GSGKTL  L+       A       
Sbjct: 295 MNFAEPTAIQKIGWPTAL----SGRDMIGIAQ--TGSGKTLGFLLPGLVHAAAQPPLAQG 348

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQ-------------NTQIIVEIITGNMPQAHRRK 366
            G   +++AP   LA Q      ++T+             +T+     + G +P+  +  
Sbjct: 349 QGPIVLVLAPTRELAMQIRHECMRFTEGLSLTSSEDPQRADTKFRTACVYGGVPRQGQAT 408

Query: 367 ALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRFG-----VQQRLKLTQ 416
            L       A I+I T     D +        ++  +++DE  R        Q R   +Q
Sbjct: 409 ELRN----GAEILIATPGRLIDFLDLGVTNLKRVSYIVLDEADRMMDMGFEPQVRKIFSQ 464

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDI------DISKITEKPAGRKPIKTVIIPINRIDE 470
                  LL +AT       L S           + K   +       +  ++  N++  
Sbjct: 465 VRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQVGKADLQANANVTQRIEVVSSNQLQH 524

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            +  +      G+K    C   E K++ +      R+  L          IHG     ++
Sbjct: 525 RLLSVLQEEVTGQKTLIFC---ETKRQCDQLCRELRYRQL------RALAIHGDKEQRER 575

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + ++  F+ G C++L+AT V   G+D+ D   +I  +      + +H++ GR GR     
Sbjct: 576 DRILHDFRKGDCEILLATDVASRGLDIQDVKFVINYDVPKNIESYIHRI-GRTGRAGNKG 634

Query: 591 SCIL-----LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           + I       Y P     +     V+++          DL++   
Sbjct: 635 TAISFFQYDFYSPEKVTMARKICEVMRSVG---QEPPADLEKIGA 676


>gi|237830475|ref|XP_002364535.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211962199|gb|EEA97394.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|221507408|gb|EEE33012.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 685

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 90/465 (19%), Positives = 159/465 (34%), Gaps = 70/465 (15%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLM--RKQFKKEIGIPINVEGKI--AQKILRN 268
              KDF    P+      +E+ A   A  +    ++ K          G     Q  LR 
Sbjct: 235 PIEKDFYVEHPSVASRTDEEVAAFLEANAMRIDGQEPKPRPVFSFEETGFPTAIQNQLRK 294

Query: 269 IPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------- 320
           + F  PT  Q+      L        M+ I Q   GSGKTL  L+       A       
Sbjct: 295 MNFAEPTAIQKIGWPTAL----SGRDMIGIAQ--TGSGKTLGFLLPGLVHAAAQPPLAQG 348

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQ-------------NTQIIVEIITGNMPQAHRRK 366
            G   +++AP   LA Q      ++T+             +T+     + G +P+  +  
Sbjct: 349 QGPIVLVLAPTRELAMQIRHECMRFTEGLSLASSEDPQRADTKFRTACVYGGVPRQGQAT 408

Query: 367 ALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQHRFG-----VQQRLKLTQ 416
            L       A I+I T     D +        ++  +++DE  R        Q R   +Q
Sbjct: 409 ELRN----GAEILIATPGRLIDFLDLGVTNLKRVSYIVLDEADRMMDMGFEPQVRKIFSQ 464

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDI------DISKITEKPAGRKPIKTVIIPINRIDE 470
                  LL +AT       L S           + K   +       +  ++  N++  
Sbjct: 465 VRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQVGKADLQANANVTQRIEVVSSNQLQH 524

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530
            +  +      G+K    C   E K++ +      R+  L          IHG     ++
Sbjct: 525 RLLSVLQEEVTGQKTLIFC---ETKRQCDQLCRELRYRQL------RALAIHGDKEQRER 575

Query: 531 ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS 590
           + ++  F+ G C++L+AT V   G+D+ D   +I  +      + +H++ GR GR     
Sbjct: 576 DRILHDFRKGDCEILLATDVASRGLDIQDVKFVINYDVPKNIESYIHRI-GRTGRAGNKG 634

Query: 591 SCIL-----LYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           + I       Y P     +     V+++          DL++   
Sbjct: 635 TAISFFQYDFYSPEKVTMARKICEVMRSVG---QEPPADLEKIGA 676


>gi|13473704|ref|NP_105272.1| DEAD-box protein, ATP-independent RNA helicase [Mesorhizobium loti
           MAFF303099]
 gi|14024455|dbj|BAB51058.1| DEAD-BOX protein, ATP-independent RNA helicase [Mesorhizobium loti
           MAFF303099]
          Length = 620

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 128/351 (36%), Gaps = 50/351 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
             T  Q++ ++    D         ++    GSGKT+   +AMA  +  G +        
Sbjct: 22  ELTPVQKAVLELGSAD--------ALVSAQTGSGKTVAFGLAMAPTLLDGAERFGAAMAP 73

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+ +AP   LA Q    ++   + T   V    G M     R+ALER     AHI++GT
Sbjct: 74  LALAVAPTRELALQVTRELEWLYEPTGATVASCVGGMDMRTERRALER----GAHIVVGT 129

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
               +D I    L        +L   DE    G ++ L+           L  A    RT
Sbjct: 130 PGRLRDHITRNSLDMSALKAVVLDEADEMLDLGFREDLEFI---------LDAAPAERRT 180

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-----EGKKAYWIC 489
           L+ ++     I+ + +   G +     I       + ++     L+            + 
Sbjct: 181 LMFSATVPRSIATLAQ---GYQRDAVRISAAGEEKQHLDIEYRALNVAQADRENAIINVL 237

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              E K    F +     N L   F     S+  + G +S  ++   + + ++G  K+ I
Sbjct: 238 RFYEAKNALVFCNTRAAVNHLTARFNNRNFSVVALSGELSQNERSHALQAMRDGRAKVCI 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           AT V   GID+ +  ++I  +        LH+  GR GR        L+  
Sbjct: 298 ATDVAARGIDLPNLELVIHADLPTNPETLLHR-SGRTGRAGRKGVSALIVP 347


>gi|145974737|gb|ABQ00072.1| PL10A [Fenneropenaeus chinensis]
          Length = 660

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/388 (18%), Positives = 138/388 (35%), Gaps = 58/388 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q+ A+  IL       +   +     GSGKT   L+ +   +   G          
Sbjct: 242 PTPVQKYALPFILA------KRDLMACAQTGSGKTAAFLVPILNQIYEQGPVQVKNNNPR 295

Query: 325 ---------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                    +I+AP   LA Q YE  +K++   ++   ++ G      + + L R     
Sbjct: 296 GRNKQYPLSLILAPTRELATQIYEEARKFSYRARVRPCVVYGGADVVSQMRDLSR----G 351

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT-----QKATAPH 422
            H+++ T     D I   K        L+L   D     G + +++          T   
Sbjct: 352 CHLLVATPGRLADMIDRGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEEDNMPPTGQR 411

Query: 423 VLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV-------- 471
             LM +   P   + L    L +     +    +  + I   I+ ++  D+         
Sbjct: 412 QTLMFSATFPKEIQRLAQDFLDNYIFLAVGRVGSTSENITQKIVWVSEDDKRSFLLDILN 471

Query: 472 ---IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRM 525
              ++R      + K A  + P+ EE     F    +  ++L E        +  IHG  
Sbjct: 472 AAGLDRATEANKDEKMAMGVPPRREESLTLVFVETKKGADALEEFLYRHGYPVTSIHGDR 531

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S  ++E  +  F++G C +L+AT V   G+D+     +I  +        +H++ GR GR
Sbjct: 532 SQREREDALRVFRSGQCPILVATAVAARGLDIPHVKHVINFDLPSDIEEYVHRI-GRTGR 590

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKN 613
              +      ++          + +L+ 
Sbjct: 591 MGNLGLATSFFNDKNRNMVRDLVELLQE 618


>gi|143462274|sp|Q0CIQ3|RRP3_ASPTN RecName: Full=ATP-dependent rRNA helicase rrp3
          Length = 445

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/348 (17%), Positives = 132/348 (37%), Gaps = 35/348 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ- 323
              + ++ PT  QE  I   L+          I   + GSGKT   ++ M  A+    Q 
Sbjct: 43  CEELGYTAPTPIQERCIPIALEGRD------LIGLAETGSGKTAAFVLPMLQALMDKPQQ 96

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             ++I+AP   LAQQ    ++       +   ++ G M    +  AL +    + H+I+ 
Sbjct: 97  FHSLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGK----KPHVIVA 152

Query: 382 THALFQDSIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           T     D ++         L  +++DE  R      L L        +L +   P  +T 
Sbjct: 153 TPGRLLDHLENTKGFSLRTLKYLVLDEADRL-----LDLDFGPILDKLLRLL--PKRKTY 205

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++     +  + ++ +   P++  +   N+    + +  + +    K +++   + E+
Sbjct: 206 LFSATMSSKVESL-QRASLSDPVRVSVSTKNQTASKLLQSYLFIPHKFKDFYLVYLLNER 264

Query: 496 KESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                          +R + +  +       IHG++S   + + ++ F+  +  LLIAT 
Sbjct: 265 AGQMGIIFTRTVHETQRLSIMLRNLGFPAIPIHGQLSQSARLASLNKFRARSRNLLIATD 324

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   G+D+     ++  +        +H++ GR  R  +         
Sbjct: 325 VAARGLDIPAVDYVLNYDLPQDSKTYIHRV-GRTARAGKSGIAFSFVT 371


>gi|91789374|ref|YP_550326.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91698599|gb|ABE45428.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 579

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 123/348 (35%), Gaps = 42/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q  AI  +L           +     G+GKT    + M   +    +        
Sbjct: 23  TPTPIQAQAIPAVLAG------SDLLGGAQTGTGKTAAFTLPMLQRLSTEPRLTNRRGVN 76

Query: 324 ---AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
              A+IM P   LA Q  E ++ Y +   +   ++ G +    +   L R       I++
Sbjct: 77  AVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQIDKLRR----GVDILV 132

Query: 381 GTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT- 429
            T     D      +   ++ ++++DE  R      +   +K           LL +AT 
Sbjct: 133 ATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALVPKHKQSLLFSATF 192

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R L    L D    ++T +    + I   I P+ R  +      ++         +
Sbjct: 193 SDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPVGRSKKKALLTHIINEHNWSQVLV 252

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +                L ++   ++A+ HG  S   +   +  FK+GT + L+AT
Sbjct: 253 FTRTK-------FGANNVAEHLTKNGIEAMAL-HGNKSQTARTQALQGFKDGTIRALVAT 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            +   GID+ +   ++     +     +H++ GR GR       + L 
Sbjct: 305 DIAARGIDIDELPHVVNYEIPNVSEDYVHRI-GRTGRAGNSGEAVSLV 351


>gi|62289105|ref|YP_220898.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699043|ref|YP_413617.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189023379|ref|YP_001934147.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237814596|ref|ZP_04593594.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus str.
           2308 A]
 gi|254696549|ref|ZP_05158377.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254731464|ref|ZP_05190042.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|260546402|ref|ZP_05822142.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260759205|ref|ZP_05871553.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260760927|ref|ZP_05873270.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|62195237|gb|AAX73537.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615144|emb|CAJ10077.1| Lipocalin-related protein and Bos/Can/Equ allergen:ATP-dependent
           helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-termin [Brucella melitensis biovar Abortus 2308]
 gi|189018951|gb|ACD71673.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237789433|gb|EEP63643.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus str.
           2308 A]
 gi|260096509|gb|EEW80385.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260669523|gb|EEX56463.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260671359|gb|EEX58180.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
          Length = 626

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 148/365 (40%), Gaps = 46/365 (12%)

Query: 272 SPTKSQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGG 322
           + T  Q + +  + L           ++    GSGKT+   +AMA  +        +AG 
Sbjct: 22  TLTAVQNAVLAPETLAS-------DLLVSAQTGSGKTVAFGLAMANTILEDELRFGDAGA 74

Query: 323 Q-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LA Q    ++    +T   +    G M     R+ALER     +HI++G
Sbjct: 75  PLAMIIAPTRELALQARRELEWLYADTGARIASCVGGMDIRTERRALER----GSHIVVG 130

Query: 382 THALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D I        Q   ++L   DE    G ++ L+           L  A    R
Sbjct: 131 TPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFI---------LGEAPEDRR 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I+++ ++        TV    ++  + I+ + + +   ++ + I   + 
Sbjct: 182 TLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHAD-IDYVAMPVPPHERDHAIINTLL 240

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                N       R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +        LH+  GR GR     +C+L+      +++   
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGTCVLVVPFSRRRSAERL 359

Query: 608 LSVLK 612
           L + K
Sbjct: 360 LHMAK 364


>gi|317404315|gb|EFV84742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 413

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 129/363 (35%), Gaps = 38/363 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L+          +     G+GKT    + +   +             
Sbjct: 27  APTPIQAQAIPQVLKG------GDLLAAAQTGTGKTAGFTLPILHLLMQSKPEARKAGRP 80

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           + +I+ P   L  Q  E ++ Y ++T +   ++ G +    +  AL +       I++ T
Sbjct: 81  RCLILTPTRELTAQVAESVQTYGKHTSLTSMVMFGGVNINPQISALRKP----LDILVAT 136

Query: 383 HALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      +    + ++++DE  R      ++  +K       ++   P  R  +L
Sbjct: 137 PGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRK-------ILALLPKQRQNLL 189

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            S    D  +   +     P +  + P N   E++ +   ++ +  K   I   I E   
Sbjct: 190 FSATFSDEIRSLARGVLNNPGEVSVTPRNTATELVTQTVHLVEQHHKRDLISHIIRESGW 249

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +    R          + A IHG  S   +   +  FK+GT  +L+AT + 
Sbjct: 250 HQVLVFTRTKHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDGTVTVLVATDIA 309

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     ++     +     +H++ GR GR     + + L      K       ++
Sbjct: 310 ARGLDIDQLPQVVNFELPNVPEDYVHRI-GRTGRAGATGAAVSLVDNSEIKLLKDIERLI 368

Query: 612 KNT 614
           K T
Sbjct: 369 KKT 371


>gi|313497676|gb|ADR59042.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida BIRD-1]
          Length = 440

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/366 (19%), Positives = 138/366 (37%), Gaps = 42/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQA----V 325
            PT  Q +AI   LQ    +      +    GSGKT   ++ +   +    GG+     +
Sbjct: 22  EPTPVQAAAIPLALQGRDLR------VTAQTGSGKTAAFVLPLLNRLVDLKGGRVEIRSL 75

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + ++ ++Q T +   ++TG      +   L ++      ++IGT   
Sbjct: 76  ILLPTRELAQQTLKQVQLFSQFTYVKAGLVTGGEDFKEQAAMLRKV----PDVLIGTPGR 131

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATP---IP 432
             + +    L L  V        D     G  + ++    +       LL +AT      
Sbjct: 132 LLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGGAAL 191

Query: 433 RTLVLTSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           R ++   L D +   +      A     + +    ++  E I +  +      KA     
Sbjct: 192 RDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLANETFDKAIIFTN 251

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     R++ +R             ++HG     D++  ++ FK G+ K+L+AT V
Sbjct: 252 T---------RAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDV 302

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRLS 609
              G+D+    ++I  +    G   +H++ GR GR G E  +  L+ H   +  S     
Sbjct: 303 AARGLDIDGLDLVINFDMPRSGDEYVHRV-GRTGRAGGEGLAISLITHNDWNLMSSIERY 361

Query: 610 VLKNTE 615
           + +  E
Sbjct: 362 LKQQFE 367


>gi|312885453|ref|ZP_07745092.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311302033|gb|EFQ79063.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 450

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 146/376 (38%), Gaps = 33/376 (8%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            N   +I   I        T  Q+ AI  I+        ++ I Q   G+GKT   ++ +
Sbjct: 8   FNFNRQILNAIADAGYTEATPVQQKAIPPIMNG----QDVMGIAQ--TGTGKTAAYMLPI 61

Query: 315 AAAVE----AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
              ++    +  +A+++AP   LA Q  E  K++ + T + +  + G +    +++ +++
Sbjct: 62  IMRLKYAQGSDARAIVIAPTRELALQIEENAKEFAKYTDLRIVSLYGGLGPKTQKELMDK 121

Query: 371 IAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATA 420
                  II+ T   F D      +   KL ++++DE  +      +    +        
Sbjct: 122 ----GVDIIVATPGRFMDVYLTGHMVTKKLEVLVLDEADKMMDMGFMPQINRILEVVPRK 177

Query: 421 PHVLLMTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
              LL +AT     + L    L    + ++T +    + +  V+  +  +   I  LK +
Sbjct: 178 RQNLLFSATMSDKIQELSSNFLEFPTVVEVTPQATPAQTVNQVLYHVPNMKTKINLLKKL 237

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS-IAIIHGRMSDIDKESVMDSF 537
           L        +    + +  +      + +  L   F    + ++H       + + +++F
Sbjct: 238 LDAPDDIKKLIIFCKTRVAAE-----DVYKFLLRKFGEKEVRVLHANKGQNTRINAINAF 292

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           KN   K+L+AT V   GIDV D S +I  +        +H++ GR GR  +    I   +
Sbjct: 293 KNDEVKILVATDVASRGIDVSDVSHVINFDVPVVYEDYVHRI-GRTGRAFQSGEAITFCN 351

Query: 598 PPLSKNSYTRLSVLKN 613
           P           +++ 
Sbjct: 352 PAEEYYIRKIEKLIRQ 367


>gi|262401852|ref|ZP_06078417.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC586]
 gi|262351824|gb|EEZ00955.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC586]
          Length = 460

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 132/365 (36%), Gaps = 40/365 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + F S T  Q  ++  IL           I QG  GSGKT    + + + +      
Sbjct: 19  LETMGFASMTPIQAQSLPAILNGQDV------IGQGKTGSGKTAAFGLGVLSNLNVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 73  VQALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 128

Query: 381 GTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATP 430
           GT     D +        +   L+L   D     G Q+ L+       T    LL +AT 
Sbjct: 129 GTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLLFSATY 188

Query: 431 I--PRTLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +  +   +  + K+  T   +  +     +      DE +E   ++  +   + 
Sbjct: 189 PASIEQVAQSVTRNAMMIKVAATHDTSSIRQYFYNVDGSTARDEALET-LLLHHQPTSSV 247

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C           R V    ++LH+   S I + HG M   +++  +  F N +  +L+
Sbjct: 248 VFCNT--------KREVQNVADALHQSGFSVIEL-HGDMEQRERDQALVQFANKSISILV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV +   +   +        +H++ GR GR          +    S     
Sbjct: 299 ATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRI-GRTGRAGSKGLAFSFFSDNESYRVAQ 357

Query: 607 RLSVL 611
               +
Sbjct: 358 IDEYM 362


>gi|167646147|ref|YP_001683810.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167348577|gb|ABZ71312.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 776

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 158/442 (35%), Gaps = 60/442 (13%)

Query: 254 PINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALI 312
           P        ++ L    +  PT  Q      +L+D +    +  ++    GSGKT+   +
Sbjct: 2   PFPASHPALERALAAQGYLEPTPVQ----AAVLEDEAIGRDL--LVSAQTGSGKTVAFGL 55

Query: 313 AMAAAVEAG---------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           A A  +               +++AP   LA Q    +     +   +V    G M    
Sbjct: 56  AAATTLLGDAEKFAKAGLPMCLVIAPTRELAIQVNRELAWLYADAGAVVVNCVGGMDARR 115

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT 415
            ++AL    +  AHI++GT    +D I+   L        +L   DE    G ++ L+  
Sbjct: 116 EQRAL----NFGAHIVVGTPGRLRDHIERGHLDLSELKVAVLDEADEMLDMGFREDLEFI 171

Query: 416 --QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE----KPAGRKPIKTVIIPINRID 469
                +    LL +AT     + L      D  +I      +P      + V +  N ++
Sbjct: 172 LDAAPSERRTLLFSATLAREIVQLAKSYQNDALRIDTVGRNEPHRDIEYRAVRVAPNEVE 231

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             +  L     E   A   C   E  +  + +        L E   + + +  G +S  +
Sbjct: 232 HAVVNLLR-YFESPGALVFCNTRESVRALHSK--------LRERGFAVVGL-SGELSQRE 281

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +   + + ++G  ++ +AT V   G+D+ D  ++I           LH+  GR GR  + 
Sbjct: 282 RADALQALRDGHARVCVATDVAARGLDLPDLGLVIHAELPVNKATLLHR-SGRTGRAGKK 340

Query: 590 SSCILLYHPPLSKNSYTRLSV--LKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA 647
               L+      + +   L    ++    G   A+   + R     L        + L+ 
Sbjct: 341 GVSALVVPYTRRRKAEQLLMAAGVEGHWGGAPTAD---EIR-----LKD-----TERLLD 387

Query: 648 QPELHDSLLEIARKDAKHILTQ 669
            P   ++++E     A+ +L +
Sbjct: 388 DPIFDEAVVEEDTALAEAMLAK 409


>gi|121997715|ref|YP_001002502.1| DEAD/DEAH box helicase domain-containing protein [Halorhodospira
           halophila SL1]
 gi|121589120|gb|ABM61700.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila
           SL1]
          Length = 403

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 119/355 (33%), Gaps = 27/355 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q  AI  +L           +     G+GKT    + +   +            +
Sbjct: 23  QPTAIQAQAIPAVLGG------GDVMASAQTGTGKTAAFTLPLLQRLSDTAPQQGQRRIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA Q  E +  Y ++  +    I G  P   +  AL R       I++ T 
Sbjct: 77  ALVLTPTRELAAQVSESVATYGRHLPLRSTEIYGGAPMGKQTAALRR----GVDIVVATP 132

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    + L  VD         R+       A   +L +     +TL+ ++    
Sbjct: 133 GRLIDHLDRGNVDLRHVD-MLILDEADRMLDMGFKPAIERILKSVPNQRQTLLFSATFSG 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---- 499
            +  +  +    +P        N   E +E+    +  G+K   +   I +         
Sbjct: 192 AVGGLARRFLN-EPTVIEAGTANAAAEAVEQGAYFVDAGRKRELLTQLINDGDWRQVLVF 250

Query: 500 --FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   +R     E        IHG  S   +   + +FK  + + L+AT V   G+D+
Sbjct: 251 TRTKRGADRLAEQLEREGIRSQSIHGDKSQGQRGRALAAFKRKSVRALVATDVAARGLDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
                ++  +  +     +H++ GR GRG +      L              ++K
Sbjct: 311 AGLPHVVNYDLPNNPEDYIHRI-GRTGRGGDSGEAWSLVGGEERGQFKAIQRLVK 364


>gi|332879243|ref|ZP_08446940.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682663|gb|EGJ55563.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 448

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 128/358 (35%), Gaps = 46/358 (12%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ F+  T  QE AI  IL+       M+ + Q   G+GKT   L+ + + +  GG  
Sbjct: 16  LDDMNFTECTPIQEHAIPVILEG----RDMIGVAQ--TGTGKTAAFLLPILSKLSDGGYP 69

Query: 323 ----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                 +IM+P   LAQQ  + ++ ++    +    + G        +    +A G A +
Sbjct: 70  EKAINCIIMSPTRELAQQIDQAMEGFSYYMNVSSVAVYGGNDGIRYEQEKRGLAMG-ADV 128

Query: 379 IIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTA 428
           II T       +    +        +L   D     G    +   +         ++ +A
Sbjct: 129 IIATPGRLISHLSLGNVDLSKVSFFVLDEADRMLDMGFSDDIMQIVKYLPQERQTIMFSA 188

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           T   +   L      D  ++              + +++  + I +   V  E +K   +
Sbjct: 189 TMPRKIQDLARTILRDPVEVK-------------LAVSKPADKIVQSAYVCYEAQKVSLV 235

Query: 489 CPQIEEKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                E+              V +   +L       +  +H  +   +++ VM  FK   
Sbjct: 236 KKLFAERPPHRVIIFASSKLKVKDMAIALGRAG-FKVGAMHSDLEQQERDEVMYKFKAQQ 294

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             +L+AT ++  GID+ D  ++I  +  H     +H++ GR  R       I L    
Sbjct: 295 IDVLVATDIVARGIDIDDIQLVINFDVPHDAEDYVHRI-GRTARANNDGEAITLVSEK 351


>gi|331268829|ref|YP_004395321.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum BKT015925]
 gi|329125379|gb|AEB75324.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum BKT015925]
          Length = 476

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 75/363 (20%), Positives = 137/363 (37%), Gaps = 37/363 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           ++ + + SPT+ QE  I   L+D         I++   GSGKT    I +   V+     
Sbjct: 16  IQMLGYKSPTEVQEKVIPIALKDKD------IIVKSQTGSGKTASFGIPVCEKVKLENKK 69

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LA Q  E I    +  +I    + G  P + ++  L++    + HI++G
Sbjct: 70  PQALILTPTRELAVQIKEDISNIGRFKKIKCVAVYGKEPVSIQKNQLKQ----RVHIVVG 125

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPI 431
           T     D I+           LI+   D+    G   +++  +         +L +AT  
Sbjct: 126 TPGRTFDHIEKGNMELSDVRYLIIDEADKMLNMGFIDQVEDVIKSLPKDRVTMLFSATLE 185

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK-AYWI 488
            R   L +  + D +  +I +K      I+     +    +     K++ +E        
Sbjct: 186 ERIEKLCVKYMNDPEKIEIDKKNVTTDIIEQEYYDVESDRKFSLLNKIIYTERPDSCIIF 245

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C    E      +   + F++           +HG M   D+  V+  FK G    L+AT
Sbjct: 246 CNTKAEVGSIAVKMKNKGFDT---------KALHGGMEQKDRLEVIQEFKRGRFPFLVAT 296

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GID+ + + +I         + +H++ GR GR       I        +   +  
Sbjct: 297 DVAARGIDIEEITHVINYEVPAEKESYVHRI-GRTGRAGHKGKSITFVCEYEDRKFKSIE 355

Query: 609 SVL 611
             +
Sbjct: 356 EYI 358


>gi|315608792|ref|ZP_07883768.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
 gi|315249486|gb|EFU29499.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
          Length = 579

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 129/362 (35%), Gaps = 42/362 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL+          +     G+GKT   L+ + + ++ GG        VIM
Sbjct: 25  TPVQEKCIPEILKG------NDVLGVAQTGTGKTAAYLLPILSKLDDGGYPKDAINCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ  + ++ +      +  +        +R     +     A ++I T     
Sbjct: 79  SPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQELKSLRLGADVVIATPGRLI 138

Query: 388 DSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVL 437
             I    +        +L   D     G  + +    K        ++ +AT   +   L
Sbjct: 139 SHISLGNVDMSKVSYFVLDEADRMLDMGFSEDILQIAKLLPDTCQTIMFSATMPAKIEEL 198

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
                 +  +I              + +++  E I++   V  E +K   I    +    
Sbjct: 199 AKTLLKNPVEIK-------------LAVSKPAEKIKQEAYVCYETQKLGIIKDIFKAGDL 245

Query: 497 -----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +  V++ N+  +    +   +H  +   +++ +M  FK+G   +L+AT ++
Sbjct: 246 KRVIIFCGSKMKVKQVNAALQRKHINCGEMHSDLEQAERDDIMFKFKSGQLDVLVATDIV 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ D +++I  +  H     +H++ GR  R +     I L       +       L
Sbjct: 306 ARGIDIDDIAMVINYDVPHDAEDYVHRI-GRTARADRDGRAITLVSEDDIYHFQQIEKFL 364

Query: 612 KN 613
           + 
Sbjct: 365 EK 366


>gi|281178534|dbj|BAI54864.1| ATP-dependent RNA helicase [Escherichia coli SE15]
          Length = 457

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 133/364 (36%), Gaps = 37/364 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNGLGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATP 430
            T     D +Q           L++   D     G        +     +   LL +AT 
Sbjct: 128 ATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATW 187

Query: 431 IPRTLVLTSLGDIDISKITEKPAGR-KPIKTVIIPINRIDEV-IERLKVVLSEGKKAYWI 488
                 ++     D   I         PI+      +   ++ + +  + L +       
Sbjct: 188 PEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVF 247

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C   +E      +SV +  N + +    S   +HG +   D++  +  F NG+ ++L+AT
Sbjct: 248 CNTKKE-----CQSVCDALNEVGQ----SALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+    +++           +H++ GR  R       I    P  ++ +    
Sbjct: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIIS 357

Query: 609 SVLK 612
            +L+
Sbjct: 358 DMLQ 361


>gi|259145266|emb|CAY78530.1| Fal1p [Saccharomyces cerevisiae EC1118]
 gi|323309503|gb|EGA62714.1| Fal1p [Saccharomyces cerevisiae FostersO]
 gi|323334268|gb|EGA75650.1| Fal1p [Saccharomyces cerevisiae AWRI796]
          Length = 399

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 152/395 (38%), Gaps = 48/395 (12%)

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           +++D     ++     +K         +N++  + + I      +P+  Q  AI  I+  
Sbjct: 1   MSFDREEDQKLKFKTSKKLKVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG 60

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY 344
                    I Q   G+GKT    I +  A++      QA+I++P   LA Q  + +K  
Sbjct: 61  KDV------IAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNL 114

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVI 399
                +    ITG          L+++       + GT     D I+        + +++
Sbjct: 115 GDYMNVNAFAITGGKTLKD---DLKKMQKHGCQAVSGTPGRVLDMIKRQMLQTRNVQMLV 171

Query: 400 VDEQHRF-----GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           +DE         G +Q++         +          + +V+++  + DI ++T K   
Sbjct: 172 LDEADELLSETLGFKQQIYDIFAKLPKNC---------QVVVVSATMNKDILEVTRKFMN 222

Query: 455 RKPIKTVIIPINRIDEV-IERLKVVLSEGKKAYWICPQIEEKKE----------SNFRSV 503
             P+K ++    + DE+ +E +K  +    K  W    + +  +           N +  
Sbjct: 223 -DPVKILV----KRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKK 277

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V+  +        ++  +HG M   +++ VM+ F+ G  ++LI+T V   GIDV   S++
Sbjct: 278 VDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLV 337

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           I  +        +H++ GR GR       I     
Sbjct: 338 INYDLPEIIENYIHRI-GRSGRFGRKGVAINFITK 371


>gi|163755968|ref|ZP_02163085.1| putative ATP-dependent RNA helicase [Kordia algicida OT-1]
 gi|161324139|gb|EDP95471.1| putative ATP-dependent RNA helicase [Kordia algicida OT-1]
          Length = 411

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 131/364 (35%), Gaps = 40/364 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------EAGGQ- 323
            PT  QE AI  IL       +   I+    G+GKT    + +   +       + G + 
Sbjct: 23  EPTLVQERAIPVIL------TKKDIIVSAQTGTGKTAAYALPILQLLFDKQDAPKKGKKI 76

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++ P   LA Q  E  + Y++ T +   +I G      ++  L++       I++ T
Sbjct: 77  KALVVCPTRELAIQIEENFQTYSKYTNLRTGVIFGGASIEPQKDMLKK----GIDILVAT 132

Query: 383 HALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQ--KATAPHVLLMTATPIP 432
                D  +           L+L   D     G    +K  +        +LL +AT   
Sbjct: 133 PGRLLDLHKQDVVNLDYVEILVLDEADLMLDMGFIDDVKKIERLCPDGKQILLFSATMPY 192

Query: 433 RT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           +   L  + L      +++   +  K +  V+  + +  + IE    +L    K   I  
Sbjct: 193 KVEHLANSILKSPAYVEVSPTSSAAKGVDQVLYYVPK-PKKIELCLHLLRNTIKGNVIIF 251

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           +         +  V++           +A IHG  S   ++  +++FK G  K+ IAT V
Sbjct: 252 R-------RTKYGVDKLEKTLLRNNYKVASIHGDKSQNLRQEALNAFKKGEAKIFIATDV 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GID+ +   +I  +  +     +H++ GR  R       +                +
Sbjct: 305 AARGIDIKNVDAVINFDIPNVSETYVHRI-GRTARAGASGMALSFCSADEKNYIKDIQQL 363

Query: 611 LKNT 614
           +  T
Sbjct: 364 INTT 367


>gi|84684523|ref|ZP_01012424.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84667502|gb|EAQ13971.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 719

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 143/368 (38%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
           + T  QE+       D++ +     ++    GSGKT+   +A+A  +             
Sbjct: 36  TLTPVQEAVSDP---DLAGR---DLLVSAQTGSGKTVGFGLAIAPTLLGEDEEFGPAGLP 89

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    +      T   +    G M     R+ALER     AHI++GT
Sbjct: 90  LALVVAPTRELAMQVKRELIWLFGKTGARLASCVGGMDMRDERRALER----GAHIVVGT 145

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
               +D IQ   L        +L   DE    G ++ L+           L  A    R 
Sbjct: 146 PGRLRDHIQRGSLDMSELRAIVLDEADEMLDLGFREDLEFM---------LEEAPEERRI 196

Query: 435 LVLTSLGDIDISKITEKPAGRKP-IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           L+ ++     I+K+ E+       + T+       D   + ++V  ++ + A +   +  
Sbjct: 197 LLFSATVPPTIAKLAEQYQNDAARVNTITGATQHADIAYQAIRVAQTDTENAIFNLLRFH 256

Query: 494 EKKES----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           + + +    N R+ V    +   +   ++  + G +S  ++   + + ++G  ++ +AT 
Sbjct: 257 DSENAIVFANTRAQVAHLTARLSNRGLNVVSLSGELSQNERTHALQAMRDGRAQVCVATD 316

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ +  ++I  +      +  H+  GR GR        L+  P   K +   L 
Sbjct: 317 VAARGIDLPNLDLVIHADLPKNTESLTHR-SGRTGRAGRKGISALIVPPRDVKKTERLLG 375

Query: 610 VLKNTEDG 617
             K T + 
Sbjct: 376 WAKTTAEW 383


>gi|285019480|ref|YP_003377191.1| ATP-dependent RNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283474698|emb|CBA17197.1| probable atp-dependent rna helicase protein [Xanthomonas
           albilineans]
          Length = 456

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 130/371 (35%), Gaps = 33/371 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q  AI   LQ          +     G+GKT    + +   +    Q        
Sbjct: 23  TPTPIQSQAIPVALQGHD------LMAGAQTGTGKTAAFGLPLLQHLGTSAQTVGSGPRK 76

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+ P   LA Q ++ ++ Y++  +I    I G +   ++  AL R       ++I 
Sbjct: 77  PRALILTPTRELATQVHDSLRGYSKYLRIPSATIYGGVGMGNQLDALRR----GVDLLIA 132

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
                 D ++   + L  ++        + L +    +   +L        +TL+ ++  
Sbjct: 133 CPGRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILTKLPKQNRQTLLFSATF 192

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI------EEK 495
           +  I ++  +     P +    P N + + I      +   +K   +   +      +  
Sbjct: 193 EEGIKQLA-REFMHNPQEIQATPSNTVADTITHRVHPVDGARKRELLLHLLAADSRKQTL 251

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             +  +   ++  +  +      A IHG  S   +   +  FK     +L+AT +   GI
Sbjct: 252 VFARTKHGADKLTTFLDKSGIKAAAIHGNKSQGQRLRALGDFKASRITVLVATDIAARGI 311

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+     +I  +        +H++ GR GR       + L     +K       +LK   
Sbjct: 312 DIDQLPQVINYDLPMVAEDYVHRI-GRTGRNGAQGEAVSLVAQDEAKLLRAIARLLKRDM 370

Query: 616 D-----GFLIA 621
           D     GF  A
Sbjct: 371 DIRDVPGFEPA 381


>gi|213051995|ref|ZP_03344873.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 718

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 2/171 (1%)

Query: 220 WTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQES 279
           W+   ++       +A ++  +  ++  K+        + +  Q    + PF  T  Q  
Sbjct: 550 WSRARQKAAEKVRDVAAELLDIYAQRAAKEG--FAFKHDREQYQLFCDSFPFETTPDQAQ 607

Query: 280 AIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339
           AI  +L DM Q   M R++ GDVG GKT VA+ A   AVE   Q  ++ P  +LAQQHY+
Sbjct: 608 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             +    N  + +E+++       + + L   A G+  I+IGTH L Q  +
Sbjct: 668 NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDV 718


>gi|209918588|ref|YP_002292672.1| ATP-dependent RNA helicase DbpA [Escherichia coli SE11]
 gi|218553903|ref|YP_002386816.1| ATP-dependent RNA helicase DbpA [Escherichia coli IAI1]
 gi|293433706|ref|ZP_06662134.1| ATP-independent RNA helicase DbpA [Escherichia coli B088]
 gi|209911847|dbj|BAG76921.1| ATP-dependent RNA helicase [Escherichia coli SE11]
 gi|218360671|emb|CAQ98232.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           IAI1]
 gi|291324525|gb|EFE63947.1| ATP-independent RNA helicase DbpA [Escherichia coli B088]
 gi|320199384|gb|EFW73975.1| ATP-dependent RNA helicase DbpA [Escherichia coli EC4100B]
 gi|323947687|gb|EGB43690.1| DEAD/DEAH box helicase [Escherichia coli H120]
          Length = 457

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|191165035|ref|ZP_03026879.1| ATP-independent RNA helicase DbpA [Escherichia coli B7A]
 gi|309797091|ref|ZP_07691489.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|190904807|gb|EDV64512.1| ATP-independent RNA helicase DbpA [Escherichia coli B7A]
 gi|308119261|gb|EFO56523.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
          Length = 457

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|320653569|gb|EFX21674.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 457

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|318041670|ref|ZP_07973626.1| putative ATP-dependent RNA helicase [Synechococcus sp. CB0101]
          Length = 407

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 132/359 (36%), Gaps = 36/359 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QAV 325
           P+  Q   I  +L+          +     G+GKT    + M   +  G        +A+
Sbjct: 9   PSPIQTQCIPAVLEGRDV------MAAAQTGTGKTAGFTLPMLERLRHGPHARNNVVRAL 62

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  E +  Y+++  +  +++ G +    +   L     G A +++ T   
Sbjct: 63  VLTPTRELAAQVGENVAAYSRHLDLRSDVVFGGVKINPQMMRLR----GGADVLVATPGR 118

Query: 386 FQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D     +++  ++ ++++DE  R      ++  QK      +L       + L+ ++ 
Sbjct: 119 LMDLAQQNAVKLNRVEILVLDEADRMLDMGFIRDIQK------ILALLPAKRQNLLFSAT 172

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
            +  I K+        P++    P NR    +E L       +K   +C  I+       
Sbjct: 173 FEASIKKLAT-GLLHNPVQLQATPENRTATTVEHLLHPCDMARKPDLLCHLIKSNDWQQV 231

Query: 500 -----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +    R          + A IHG  S   +   +  FK+G  ++L+AT +   G
Sbjct: 232 LVFSRTKHGANRIADRLTQEGMAAAAIHGNKSQGARTRALAGFKSGELRVLVATDIAARG 291

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           ID+     ++  +  +     +H++ GR GR       + L      +       ++ N
Sbjct: 292 IDIHQLPHVVNLDLPNQAEDYVHRI-GRTGRAGCNGHAVSLVAAEEHELLRAIERLIGN 349


>gi|297620744|ref|YP_003708881.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]
 gi|297376045|gb|ADI37875.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]
          Length = 439

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 128/366 (34%), Gaps = 40/366 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           SPT+ Q  AI   ++    +           GSGKT   L+       A       G + 
Sbjct: 23  SPTEIQCKAIPKAVKGFDLR------ASAQTGSGKTAAFLLPALHHCVANPRKPTVGPRV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +I++P   LA Q      KY++   ++    I+G +P   +++ L R       I+I T 
Sbjct: 77  LILSPTRELAMQIATQADKYSKFLNRVKSVCISGGVPYHVQQRKLRRPYE----ILIATP 132

Query: 384 ALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVL 437
               D I    + L  +     DE  R      ++  +K       +  ATP   +TL+ 
Sbjct: 133 GRLIDYINQKAINLSAIEILVLDEADRMLDMGFIEPVEK-------IAAATPSSRQTLLF 185

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL----SEGKKAYWICPQIE 493
           ++     +  ++ +    +P+  VI       E I +    +     + +    I     
Sbjct: 186 SATMQGSVLNLSNRLLN-EPMDIVIHSEKTKHENITQKLHYVDGLQHKNQLLEHILNDDV 244

Query: 494 EKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            K    F S     + L             +HG MS   +   +   + G  K+L+AT V
Sbjct: 245 VKHAIVFTSTKRHASQLVFELHDKGLLAGALHGDMSQRQRSRTIAQLRTGKIKVLVATDV 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GIDV + + +I  +        +H++ GR GR     + +       +         
Sbjct: 305 AARGIDVQNITHVINFDLPRNVEDYVHRI-GRTGRAGAAGTALSFASGKDTSLVKKIEEY 363

Query: 611 LKNTED 616
                D
Sbjct: 364 TGQPID 369


>gi|262373548|ref|ZP_06066826.1| DEAD/DEAH box helicase [Acinetobacter junii SH205]
 gi|262311301|gb|EEY92387.1| DEAD/DEAH box helicase [Acinetobacter junii SH205]
          Length = 642

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/381 (18%), Positives = 129/381 (33%), Gaps = 40/381 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  Q+ L  + F+ PT  QE AI   L+          ++    GSGKT   L+    A
Sbjct: 11  HETLQQALEGLGFTSPTPVQEQAIPAALEGKD------LLVSSQTGSGKTAAFLLPTLNA 64

Query: 318 VE---------------AGGQAVIMAPIGILAQQH-YEFIKKYTQNTQIIVEIITGNMPQ 361
           +                     +++ P   LAQQ   + I        + +  I G MP 
Sbjct: 65  LTGQETFVPFKERMKAITQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPF 124

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             + + L+      A +I+ T     D +   +L L  V E        R+     +   
Sbjct: 125 GKQIQQLK-----GAQVIVATPGRLLDLVNRRQLKLDKV-ESLIVDEADRMLDLGFSEDL 178

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             +   A    +TL+ ++     I ++ E+         +    +   +V + L      
Sbjct: 179 EAIGELAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDGF 238

Query: 482 GKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             K   +   + ++           +   +           S+  +HG M    +   + 
Sbjct: 239 EHKKKLLTHWLSDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLR 298

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           S + G  K+L+AT V   G+DV   S +I           +H++ GR GR       I L
Sbjct: 299 SIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRI-GRTGRAGRTGQAITL 357

Query: 596 YHPPLSKNSYTRLSVLKNTED 616
                +     ++  L++  D
Sbjct: 358 ----ATYRERGKIRALEDYLD 374


>gi|217073124|gb|ACJ84921.1| unknown [Medicago truncatula]
          Length = 413

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 129/348 (37%), Gaps = 43/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+  I   ++ +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFIKGLDV------IQQAQSGTGKTATFCSGILQQLDYSVTECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 116 PTRKLAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----SSGVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L   
Sbjct: 172 MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEAL--- 228

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEKK- 496
                   +IT K    KP++ ++      ++ + +    V  E  K   +C   E    
Sbjct: 229 --------EITRKFMN-KPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAI 279

Query: 497 -----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++
Sbjct: 280 TQSVVFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             GIDV   S++I  +        LH++ GR GR       I      
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTTD 386


>gi|189425674|ref|YP_001952851.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421933|gb|ACD96331.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 439

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/389 (18%), Positives = 139/389 (35%), Gaps = 39/389 (10%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 +   K+   I      +PT  Q  AI  I+      + ++ + Q   G+GKT  
Sbjct: 1   MPFQQFSFHPKVVAGINALGYTTPTPIQAQAIPKIMAG----HDLMGLAQ--TGTGKTAA 54

Query: 310 ALIAMAAAVEAGG----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRR 365
             + +   +  G     +A+++AP   LA+Q  + + +  Q T++    + G +    + 
Sbjct: 55  FALPILHRLMQGPRKQVRALVIAPTRELAEQINDAMLELGQQTRLKSITVYGGVNVNPQI 114

Query: 366 KALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLT 415
           + L         I++       D I            L+L   D+    G     R  L 
Sbjct: 115 EKL----KNGVEIVVACPGRLLDHINQGTIDLTNLELLVLDEADQMFDMGFLPDIRRILK 170

Query: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKI-TEKPAGRKPIKTVIIPINRIDEVIER 474
                   +L +AT       L      D + +  +  A    +   + P+ +  +    
Sbjct: 171 HLPAQRQTMLFSATMPAEIRGLAREILRDPATVQVDNVAPAATVSHALYPVAQHLKTPLL 230

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           ++++      +  I  +         +   +R     E    + A + G +S   +++ M
Sbjct: 231 MQLLKHTDTDSVLIFTRT--------KHRAKRVGEQLEKAGYTAASLQGNLSQNRRQAAM 282

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           D F+NGT ++L+AT +   GIDV   S +I  +      A +H++ GR GR         
Sbjct: 283 DGFRNGTYQILVATDIAARGIDVSQVSHVINYDIPDTSEAYIHRI-GRTGRAARNGDAFT 341

Query: 595 LYHPPLSKNSYTRLSVL-----KNTEDGF 618
           +     +         L     + T +GF
Sbjct: 342 MVTDEDTLMVKAIERTLGAAIERRTVEGF 370


>gi|24372961|ref|NP_717003.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24347107|gb|AAN54448.1|AE015582_2 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 433

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 130/371 (35%), Gaps = 32/371 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------AVEAGGQAV 325
           T  Q+ AI  I +          +     G+GKT    + +           +++  + +
Sbjct: 25  TPIQQQAIPAIRRGQDV------LASAQTGTGKTAAFALPILQKMVENPSETLKSNTRVL 78

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E ++ Y++     V  I G +    + + L+R     A II+ T   
Sbjct: 79  ILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLKR----GADIIVATPGR 134

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             + +    L L  VD         R+     +     +L       + L+ ++     +
Sbjct: 135 LLEHLTACNLSLSSVD-FLVLDEADRMLDMGFSADIQKILQAVNKKRQNLLFSATFSSAV 193

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRS 502
            K+       KP        N   + + ++   + + +K   +   I +K       F +
Sbjct: 194 KKLAN-EMMIKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIGKKNWQQVLVFTA 252

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +  ++L +          ++HG  +   +   +  F +G  ++L+AT V   G+D+  
Sbjct: 253 TRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVATEVAARGLDIPS 312

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN-----T 614
              ++  +        +H++ GR GR  +    I        +       ++       T
Sbjct: 313 LEYVVNFDLPFLAEDYVHRI-GRTGRAGKSGVAISFVSREEERTLADIEKLIGQKIRRIT 371

Query: 615 EDGFLIAEEDL 625
             G+ +   DL
Sbjct: 372 VPGYEVGSRDL 382


>gi|313667868|ref|YP_004048152.1| ATP-dependent RNA helicase [Neisseria lactamica ST-640]
 gi|313005330|emb|CBN86763.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06]
          Length = 457

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 128/369 (34%), Gaps = 34/369 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +PT  Q +AI   L           +     G+GKT   ++     ++    A       
Sbjct: 25  TPTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYATASTSPAMH 78

Query: 325 ----VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               +++ P   LA Q  + ++ Y +N  +   ++ G M    +   L         I++
Sbjct: 79  PVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTADLRAGCE----IVV 134

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D ++   + L  V E        R+           ++       +TL+ ++ 
Sbjct: 135 ATVGRLLDHVKQKNIHLNKV-EIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSAT 193

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I K+ +      P    +   N  +  +E+  + +   +K   +   I +      
Sbjct: 194 FSAPIRKLAQDFMN-APETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLHMNQV 252

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+R          S   IHG  S   +   +++FK+G+ ++L+AT +   G
Sbjct: 253 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARG 312

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+ +   +I           +H++ GR GR       I L    + ++       +K  
Sbjct: 313 LDIAELPFVINYEMPAQPEDYVHRI-GRTGRAGADGVAISL----MDESEQKMFEAIKEL 367

Query: 615 EDGFLIAEE 623
               L+ E 
Sbjct: 368 TGNKLLIER 376


>gi|261401858|ref|ZP_05987983.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           lactamica ATCC 23970]
 gi|269207983|gb|EEZ74438.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           lactamica ATCC 23970]
          Length = 457

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 128/369 (34%), Gaps = 34/369 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +PT  Q +AI   L           +     G+GKT   ++     ++    A       
Sbjct: 25  TPTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYATASTSPAMH 78

Query: 325 ----VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               +++ P   LA Q  + ++ Y +N  +   ++ G M    +   L         I++
Sbjct: 79  PVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTADLRAGCE----IVV 134

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D ++   + L  V E        R+           ++       +TL+ ++ 
Sbjct: 135 ATVGRLLDHVKQKNIHLNKV-EIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSAT 193

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I K+ +      P    +   N  +  +E+  + +   +K   +   I +      
Sbjct: 194 FSAPIRKLAQDFMN-APETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLHMNQV 252

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+R          S   IHG  S   +   +++FK+G+ ++L+AT +   G
Sbjct: 253 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARG 312

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+ +   +I           +H++ GR GR       I L    + ++       +K  
Sbjct: 313 LDIAELPFVINYEMPAQPEDYVHRI-GRTGRAGADGVAISL----MDESEQKMFEAIKEL 367

Query: 615 EDGFLIAEE 623
               L+ E 
Sbjct: 368 TGNKLLIER 376


>gi|118482639|gb|ABK93239.1| unknown [Populus trichocarpa]
          Length = 413

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 125/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYDIVECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 172 MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ +  +E L          Y      +   
Sbjct: 232 RKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GI+
Sbjct: 285 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIN 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRD 386


>gi|160331647|ref|XP_001712530.1| rrp3 [Hemiselmis andersenii]
 gi|159765979|gb|ABW98205.1| rrp3 [Hemiselmis andersenii]
          Length = 398

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 135/358 (37%), Gaps = 33/358 (9%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA---VIM 327
           F PTK Q   I   L           I     GSGKT+  L+ +   +     A   +I+
Sbjct: 23  FIPTKIQAKVIPHALNGRD------IIGYAQTGSGKTIAYLLPIIQNLVKKKTAFFSIIL 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LA Q   + + +     I + ++ G +    ++  L        HI+I T     
Sbjct: 77  VPSRELAFQIASYFEAFGNIFGIKIVVLVGGLENFSQKALLSL----NPHILICTPGRLI 132

Query: 388 DSIQY------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           + ++        KL ++++DE        RL          ++        ++L  ++  
Sbjct: 133 EHLEKFLKNKIKKLEILVIDEAD------RLFQLDFKKEFSIIFSELPKNKQSLFFSATM 186

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK----- 496
            +++  + +K   + P+K  I    ++ + +++  + + +  K  +      E       
Sbjct: 187 SLNLENL-QKNNMKNPVKIQINRKYKVVKTLQQNYIFIPQKLKDCYFIYLCNEFNGSSIL 245

Query: 497 -ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
              + +   E+   L +    +   +HG M+   +  ++  F+ G  K+LIAT +   G+
Sbjct: 246 VFVDTQKCAEKKTLLAKFLGFNAEYLHGGMNQNKRLEILQKFRFGKIKILIATDLASRGL 305

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           D+ +  +++  +  H     LH++ GR  R  +    I +             ++++ 
Sbjct: 306 DIPNVDLVLNYDLPHLAKEYLHRV-GRTARAGKSGRTINIVTQYDIHLCQKIETLVQQ 362


>gi|317494076|ref|ZP_07952492.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917849|gb|EFV39192.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 459

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 139/361 (38%), Gaps = 33/361 (9%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + S T  Q +A+  IL+    +       Q   GSGKT    I +   ++     
Sbjct: 18  LAELGYASMTPVQAAALPAILEGRDVR------AQAKTGSGKTAAFGIGLLQQIDVTQFT 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  + TQ I +  + G  P +H+  +L        HI++
Sbjct: 72  TQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPISHQLDSLVHA----PHIVV 127

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATP 430
           GT    Q+ ++           L+L   D     G        ++   TA   LL +AT 
Sbjct: 128 GTPGRIQEHLRKKSVSLDAMKVLVLDEADRMLDMGFADAIDDVISYTPTARQTLLFSATY 187

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
                 +++    +   I        P            E +  L+ +LS  + A  +  
Sbjct: 188 PQGIERISARVQREPVTIETGDVSALPDIEQQFYETSRGEKLLLLQALLSNLQPASCVV- 246

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                  +  R   + +++L      S+  +HG +   +++ V+  F N +C++L+AT V
Sbjct: 247 -----FCNTKRDCQDVYDALSGQ-DISVLALHGDLEQRERDQVLVRFSNRSCRVLVATDV 300

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ +  +++           +H++ GR  R  +    +    P     ++     
Sbjct: 301 AARGLDIKELEMVVNYELSFDPEVHVHRI-GRTARAGQKGLAVSFVAPSEMVRAHALEDY 359

Query: 611 L 611
           +
Sbjct: 360 I 360


>gi|296328514|ref|ZP_06871033.1| DEAD/DEAH box family ATP-dependent RNA helicase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296154323|gb|EFG95122.1| DEAD/DEAH box family ATP-dependent RNA helicase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 528

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/342 (19%), Positives = 127/342 (37%), Gaps = 34/342 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAP 329
           SPT  Q   I  +L     KN    I Q   G+GKT    + +    E     QA+++ P
Sbjct: 30  SPTPIQRLTIPALL-----KNDKDIIGQAQTGTGKTAAFSLPIIENFENLEHIQAIVLTP 84

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +   + + ++ V  + G      +RK ++        +++GT     D 
Sbjct: 85  TRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKT----GVDVVVGTPGRVIDL 140

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTL--VL 437
           I+   L L  +        DE    G  + +   LT       +L  +AT     +    
Sbjct: 141 IERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRMLFFSATMPDEIMKVAK 200

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIEEKK 496
             + + ++  +  +       + +   +N  D+     +++ L++       C    +  
Sbjct: 201 NHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGIIFCRTKTDVN 260

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           E   R     +++           +HG +    +E  +  FK     +L+AT V   GID
Sbjct: 261 EIVGRLNDRGYDA---------EGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + D S +I         + +H++ GR GR  +  + I    P
Sbjct: 312 INDLSHVINYAIPQEVESYVHRI-GRTGRAGKEGTAITFITP 352


>gi|283851662|ref|ZP_06368941.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
 gi|283572992|gb|EFC20973.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
          Length = 492

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 73/367 (19%), Positives = 139/367 (37%), Gaps = 39/367 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           ++ + +  PT  Q  AI  + +       ++ + Q   G+GKT   L+ +   +      
Sbjct: 16  IKRLGYENPTPIQAEAIPHVTEG----RDLMGLAQ--TGTGKTAAFLLPIIHRLMTTKSE 69

Query: 321 --GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G +A+I+AP   LA+Q Y       + T++   +I G +    + +AL +       I
Sbjct: 70  KRGVRALILAPTRELAEQIYRAGLDLGRGTRLRAAVIYGGVGMFPQTRALRQ----GVDI 125

Query: 379 IIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-IP 432
           I+       D      +++  L  +++DE         L   ++       +++A P   
Sbjct: 126 IVACPGRLLDHMNQGNVRFDALETLVLDEADHMFDMGFLPDIKR-------ILSALPSER 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     IS +           TV I        +E     +S  +KA  +   +
Sbjct: 179 QTLLFSATMPPAISGLAH--ETLTDPVTVRIGHMAPLSTVEHAIYPISHTQKAPLLLHLL 236

Query: 493 EEKKESN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           EE  + +   F     R  +L      S      + G +S   ++  MD F+ G+ ++L+
Sbjct: 237 EEAGKQSVIVFTRTKHRAKNLALQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQVLV 296

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT +   GIDV     ++  +      A  H++ GR GR E                   
Sbjct: 297 ATDIAARGIDVSQVGHVVNFDIPDTAEAYTHRI-GRTGRAEHEGQAHTFVTGEDMGMVRA 355

Query: 607 RLSVLKN 613
             S +K 
Sbjct: 356 IESHMKK 362


>gi|194216191|ref|XP_001497891.2| PREDICTED: similar to mCG15236 [Equus caballus]
          Length = 563

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 132/373 (35%), Gaps = 40/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
            PT  Q  A   +LQ +        I     G+GKTL  L+     ++        G   
Sbjct: 181 KPTPIQSQAWPIVLQGID------LIGVAQTGTGKTLSYLMPGFIHLDSQPIEKRNGPGM 234

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q      KY+      V I  G      R   ++ +  G   III T  
Sbjct: 235 LVLTPTRELALQVEAECSKYSYKGLKSVCIYGGG----DRNGQIQDLTKG-VDIIIATPG 289

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      +    +  +++DE  +           K      +L+   P  +T++ ++
Sbjct: 290 RLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMK------ILLDVRPDRQTVMTSA 343

Query: 440 LGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
                + ++ +       I  V    ++ ++ + + I              ++     + 
Sbjct: 344 TWPYSVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEEEKRSHIQTFLESMSPKD 403

Query: 496 KESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           K   F S     + L         S+  +HG     D+E  +++FK G  ++LIAT +  
Sbjct: 404 KVIVFVSRKAVADHLSSDLILQHISVESLHGNREQSDRERALENFKTGKVRILIATDLAS 463

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV D + +   +        +H++ GR GR       I L      + +   +++L+
Sbjct: 464 RGLDVHDVTHVYNYDFPRNIEEYVHRV-GRTGRAGRTGVSITLLTRNDWRVANELINILE 522

Query: 613 NTEDGFLIAEEDL 625
                     EDL
Sbjct: 523 RANQSI---PEDL 532


>gi|162447297|ref|YP_001620429.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A]
 gi|161985404|gb|ABX81053.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A]
          Length = 547

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 125/350 (35%), Gaps = 36/350 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + F+  T  QE AI  ++  +        I Q   G+GKT    I M    +     
Sbjct: 18  LEKLGFTEATPIQEQAIPKMILGLD------LIGQAQTGTGKTFAFGIPMVEKTDTSLRQ 71

Query: 322 GQAVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +I+ P   L  Q + E IK      ++ V  I G      + K L+R    + HII+
Sbjct: 72  TQGLILTPTRELTNQVYKEIIKLVKFYPELRVTTIVGGESYEKQFKELDR----KPHIIV 127

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
            T     D I            L L   DE  + G Q  +   L         +L +AT 
Sbjct: 128 ATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIERILQTTPETRQTVLFSATM 187

Query: 431 --IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               + +      + ++ KI  K      I      +   ++     +++  E      I
Sbjct: 188 PAFIKKIAKNYQKNPELIKIEAKSLTVDRITQAYFLVKEKEKQSLLERLLDFENPSTAII 247

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N ++  +R     +    +   +HG +    +  VM+ F++    +L+AT
Sbjct: 248 FV--------NTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQLSILVAT 299

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            V   G+DV D  II+  +        +H++ GR GR  +         P
Sbjct: 300 DVAARGLDVDDVEIIVNYDLPQQDEIYVHRI-GRTGRAGKKGKAFTFVTP 348


>gi|26991657|ref|NP_747082.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986754|gb|AAN70546.1|AE016697_1 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 626

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPAGHPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q ++  K Y ++  ++   I G +    + +A+ +       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNPQIQAIAK----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D      +    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ + +K     P +  + P N   E IE+    L    K   +   I 
Sbjct: 187 NLLFSATFSKDITDLADK-LLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     E    + A IHG  S   +   +  FK  + ++L+A
Sbjct: 246 LGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSVRVLVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVEEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             V K       IA+ DL
Sbjct: 365 ERVTKQ-----RIADGDL 377


>gi|311244125|ref|XP_001925444.2| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Sus
           scrofa]
          Length = 643

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 92/542 (16%), Positives = 177/542 (32%), Gaps = 65/542 (11%)

Query: 108 RKTEMLKNVFFEG---RKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIE--AVYSL 162
           + T   K    +G    ++ + G  ++++++  +V  + +    +  + P ++  A+  L
Sbjct: 94  QNTTYTKIQIIKGYPEAEVRIFGT-EEMQSKARIVIDNIVKKQEEYKSEPKVDVAAIQPL 152

Query: 163 PTGLSVDLFKKIIVEALSRLPVLPEWIEKDLLQKK-SFPSIAEAFNIIHNPRKAKDFEWT 221
               +         + L       E I +   +K    P I + F +      +   E  
Sbjct: 153 DREDTKKDVSG--NQKLIDWDKFRENILEWSEKKWAGLPLIKKNFYMESEITSSMSQEQV 210

Query: 222 SPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI-----PFS-PTK 275
              R+      ++   +     R             E          I      F  PT 
Sbjct: 211 QNWRK--ENYNIMCDDLKDGEKR----PIPNPACKFEDAFQCYPEVMINIKKAGFQKPTP 264

Query: 276 SQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------AGGQAVIMAP 329
            Q  A   ILQ +        I     G+GKTL  L+     V+       G   +++ P
Sbjct: 265 IQSQAWPIILQGID------LIGVAQTGTGKTLSYLMPGFIHVDSQPVARNGPGMLVLTP 318

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q      KY+      V +  G       +  L+        III T     D 
Sbjct: 319 TRELALQVEAECSKYSYKGLKSVCVYGGGDRDGQIKDLLK-----GVDIIIATPGRLND- 372

Query: 390 IQYYK---------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           +Q            L+L   D+    G + ++            L+   P  +T++ ++ 
Sbjct: 373 LQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMKI---------LLDIRPDRQTVMTSAT 423

Query: 441 GDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
               + ++ +       I  V    ++ ++ + + I              +I     + K
Sbjct: 424 WPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTFIESMSPKDK 483

Query: 497 ESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F S     + L         S+  +HG     D+E  + +FK G  ++LIAT +   
Sbjct: 484 VIIFVSRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRILIATDLASR 543

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV D + +   +        +H++ GR GR       I L      K +   + +L+ 
Sbjct: 544 GLDVHDVTHVYNYDFPRNIEEYVHRV-GRTGRAGRTGVSITLITRSDWKIAGELIHILER 602

Query: 614 TE 615
             
Sbjct: 603 AN 604


>gi|262170498|ref|ZP_06038176.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus MB-451]
 gi|261891574|gb|EEY37560.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus MB-451]
          Length = 460

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 132/365 (36%), Gaps = 40/365 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + F + T  Q  ++  IL           I QG  GSGKT    + + + +      
Sbjct: 19  LETMGFATMTPIQAQSLPAILNGQDV------IGQGKTGSGKTAAFGLGVLSNLNVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 73  VQALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 128

Query: 381 GTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATP 430
           GT     D +        +   L+L   D     G Q+ L+       T    LL +AT 
Sbjct: 129 GTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLLFSATY 188

Query: 431 I--PRTLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +  +   +  + K+  T   +  +     +      DE +E   ++  +   + 
Sbjct: 189 PASIEQIAQSVTRNAMMIKVAATHDTSSIRQYFYKVDGSAARDEALET-LLLHHQPTSSV 247

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C           R V    ++LH+   S I + HG M   +++  +  F N +  +L+
Sbjct: 248 VFCNT--------KREVQNVADALHQSGFSVIEL-HGDMEQRERDQALVQFANKSISILV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV +   +   +        +H++ GR GR          +    S     
Sbjct: 299 ATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRI-GRTGRAGSKGLAFSFFSDNESYRVAQ 357

Query: 607 RLSVL 611
               +
Sbjct: 358 IDEYM 362


>gi|258625772|ref|ZP_05720651.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|258582010|gb|EEW06880.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
          Length = 460

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 132/365 (36%), Gaps = 40/365 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + F + T  Q  ++  IL           I QG  GSGKT    + + + +      
Sbjct: 19  LETMGFATMTPIQAQSLPAILNGQDV------IGQGKTGSGKTAAFGLGVLSNLNVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 73  VQALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 128

Query: 381 GTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATP 430
           GT     D +        +   L+L   D     G Q+ L+       T    LL +AT 
Sbjct: 129 GTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLLFSATY 188

Query: 431 I--PRTLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +  +   +  + K+  T   +  +     +      DE +E   ++  +   + 
Sbjct: 189 PASIEQIAQSVTRNAMMIKVAATHDTSSIRQYFYKVDGSAARDEALET-LLLHHQPTSSV 247

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C           R V    ++LH+   S I + HG M   +++  +  F N +  +L+
Sbjct: 248 VFCNT--------KREVQNVADALHQSGFSVIEL-HGDMEQRERDQALVQFANKSISILV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV +   +   +        +H++ GR GR          +    S     
Sbjct: 299 ATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRI-GRTGRAGSKGLAFSFFSDNESYRVAQ 357

Query: 607 RLSVL 611
               +
Sbjct: 358 IDEYM 362


>gi|218704863|ref|YP_002412382.1| ATP-dependent RNA helicase DbpA [Escherichia coli UMN026]
 gi|293404872|ref|ZP_06648864.1| ATP-dependent RNA helicase DbpA [Escherichia coli FVEC1412]
 gi|298380516|ref|ZP_06990115.1| ATP-independent RNA helicase DbpA [Escherichia coli FVEC1302]
 gi|300900110|ref|ZP_07118304.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|331672872|ref|ZP_08373658.1| ATP-independent RNA helicase DbpA [Escherichia coli TA280]
 gi|218431960|emb|CAR12845.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           UMN026]
 gi|291427080|gb|EFF00107.1| ATP-dependent RNA helicase DbpA [Escherichia coli FVEC1412]
 gi|298277958|gb|EFI19472.1| ATP-independent RNA helicase DbpA [Escherichia coli FVEC1302]
 gi|300356389|gb|EFJ72259.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|331070093|gb|EGI41462.1| ATP-independent RNA helicase DbpA [Escherichia coli TA280]
          Length = 457

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LDELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|218281439|ref|ZP_03487888.1| hypothetical protein EUBIFOR_00453 [Eubacterium biforme DSM 3989]
 gi|218217417|gb|EEC90955.1| hypothetical protein EUBIFOR_00453 [Eubacterium biforme DSM 3989]
          Length = 475

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 139/382 (36%), Gaps = 43/382 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + +  P   QE  I +IL       +   I++   GSGKT    I +   +E     
Sbjct: 16  LHTLGYEKPLPVQEQVIPNILS------QTDCIVKSRTGSGKTASFAIPIIQNLEIDERS 69

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA Q  +   +     +I    I G  P   +++ L++      H++IG
Sbjct: 70  PQALVLTPTRELALQIQQDFDRIGTFKKIKTLPIFGKQPFKFQKEDLKQRC----HVVIG 125

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPI 431
           T     D +Q   L        +L   DE        + +  L          L +AT  
Sbjct: 126 TPGRVLDHLQQQTLDPSKIKYVVLDEADEMLNMNFLDEVQAILKYMPKKHVTCLFSATYP 185

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
                ++       +K+      +  I      +N   + +  L ++  +  ++  I   
Sbjct: 186 AVIQRMSKKYLYKPAKVDLTSTNKPNILEEAYHVNEEHKELFLLHLLALKKPESCMIF-- 243

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    ++ V+   +  E    S+  IHG M   ++ S M  FK G  ++L+ T V 
Sbjct: 244 ------CKTQARVDAVYACLEKNQVSVDKIHGGMMQEERLSHMRRFKKGKVRILVCTDVA 297

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV    +II  +         H++ GR GR +E    I L +             L
Sbjct: 298 SRGIDVFKVEMIINYDMPSPVETYTHRI-GRSGRVDEQGLAISLVNEYDGVRKEKLEEYL 356

Query: 612 KNTEDGFLIAEEDLKQRKEGEI 633
                G+ +  +D     EGE+
Sbjct: 357 -----GYNLPFKD-----EGEV 368


>gi|167568882|ref|ZP_02361756.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
          Length = 408

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 132/378 (34%), Gaps = 42/378 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------- 318
             + ++ PT  Q  AI  +L           +     G+GKT    + +   +       
Sbjct: 17  NELGYTQPTPIQAQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHTFYAEN 70

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             I++ T     D +Q           L+L   D     G    +K  L +       LL
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPKKRQNLL 186

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L  + L    + ++  +    + +   I P++R  +      ++     
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNW 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  +         +    R          S   IHG  S   +   +  FK+ T +
Sbjct: 247 FQVLVFTRT--------KHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQ 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT +   GID+     ++  +  +     +H++ GR GR       + L      + 
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKQL 357

Query: 604 SYTRLSVLKNTEDGFLIA 621
                 ++K      +IA
Sbjct: 358 LRDIERLIKREISQEVIA 375


>gi|293409738|ref|ZP_06653314.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470206|gb|EFF12690.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 457

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|238753347|ref|ZP_04614710.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
 gi|238708300|gb|EEQ00655.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
          Length = 453

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 135/369 (36%), Gaps = 40/369 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------- 323
           PT  Q  AI  +LQ          +     G+GKT    + +   +    Q         
Sbjct: 24  PTPIQRQAIPVVLQGRD------LMASAQTGTGKTAGFTLPLLQILNENAQPIKGRRPVR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  E +++Y++  ++   ++ G +    +   L     G   I++ T 
Sbjct: 78  ALILTPTRELAAQIGENVEQYSKYLKLRSLVVFGGVSINPQMMKLR----GGVDILVATP 133

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTATPIPR 433
               D     ++   K+ ++++DE  R          R  L +       LL +AT    
Sbjct: 134 GRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDE 193

Query: 434 T--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L    L +    ++  +    + I   +  +++  +     +++ S+  +   +  +
Sbjct: 194 IKGLASKLLNNPASVEVARRNTASEQITQSVHFVDKNRKRELLSQMIGSQNWQQVLVFTR 253

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +                L++   ++ AI HG  S   +   +  FK+G  ++L+AT + 
Sbjct: 254 TKHGANH-------LAEQLNKDGITAAAI-HGNKSQGARTRALADFKDGKIRVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     ++     +     +H++ GR GR E     I L      K       +L
Sbjct: 306 ARGLDIDQLPHVVNYELPNVPEDYVHRI-GRTGRAERTGEAISLVCIDEHKLLRDIERLL 364

Query: 612 KNTEDGFLI 620
           K     F I
Sbjct: 365 KREIPRFAI 373


>gi|257066575|ref|YP_003152831.1| DEAD/DEAH box helicase domain-containing protein [Anaerococcus
           prevotii DSM 20548]
 gi|256798455|gb|ACV29110.1| DEAD/DEAH box helicase domain protein [Anaerococcus prevotii DSM
           20548]
          Length = 536

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 90/439 (20%), Positives = 163/439 (37%), Gaps = 68/439 (15%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           + ++ +  P+  QE +I  +L+          I +   GSGKT    I +   +EA G  
Sbjct: 16  IDDLGYEKPSPIQEESIPHLLEG------NDLIGKSQTGSGKTAAFAIPIIENIEANGIT 69

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+I+ P   L  Q  + I+K  +  + I +  + G      + K+L++       I++G
Sbjct: 70  QALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGGSHIVRQIKSLKK----GVEIVVG 125

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAP--HVLLMTATPI 431
           T     D ++   L L  +        DE    G +  +K     T P       +AT  
Sbjct: 126 TPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNPNRQTCFFSATMG 185

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
           P           + SK+ +       IK+  + ++RID+      + L E  K   +   
Sbjct: 186 PEI--------QEFSKLYQTNPYEVKIKSKEVTVDRIDQ----YYIKLKESMKEEALMRL 233

Query: 492 IEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +E  K        N +  V+R           +  +HG +    ++ VM  F+N T ++L
Sbjct: 234 LEIHKANLAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTIQIL 293

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT +   G+DV D  I+   +        +H++ GR  R  +      L     +    
Sbjct: 294 VATDIAARGLDVDDVDIVFNYDLPQLDEYYVHRI-GRTARAGKSGLSFSLISGRDNNRLR 352

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
              +  K                       IKQ  +P  +    +    L+E    D   
Sbjct: 353 QIENYTKAN---------------------IKQMPVPTLVQMDRQSDLRLIE----DISS 387

Query: 666 ILTQDPDLTSVRGQSIRIL 684
            L ++ DL+  +   IR++
Sbjct: 388 KLDKNEDLSREKDILIRLM 406


>gi|197335615|ref|YP_002156614.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197317105|gb|ACH66552.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 398

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 130/354 (36%), Gaps = 38/354 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           +  + +  PT  Q+ AI   L           I     G+GKT   ++ +   +      
Sbjct: 16  IDELGYKAPTPIQQKAIPVALTGK------NLIAAAQTGTGKTASFVLPILEILSEDSTK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+I+ P   LA Q  E I++Y+++  I    + G +    +++ L        
Sbjct: 70  VRAKRIRALILTPTRELAIQVEENIQQYSKHIDITSLAMYGGVDYKDQKQRLIE----GV 125

Query: 377 HIIIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +++ T     D      I + +L ++++DE  R      ++   K       ++   P+
Sbjct: 126 DVLVATPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDINK-------IIERLPL 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  +   K A   PI+  I P       I++    + + KK+  +   
Sbjct: 179 DRQNMLFSATLSDQVRYLAKTAINNPIEISISPKTTSSPQIDQWLTTVDKDKKSALLSHL 238

Query: 492 IEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           I+E            +    +  S  E         H   S   +  V++ FK G  + L
Sbjct: 239 IKENNWDQALIFIETKHGAAKLVSQLEKRDIRAEAFHSGRSQEARAKVLNDFKEGKLQYL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +AT +   GID+ + + ++  +        +H++ GR GR       I      
Sbjct: 299 VATGIAARGIDIDELTRVVNYDLPFPADDYVHRI-GRTGRAGAKGEAISFVSKD 351


>gi|171059329|ref|YP_001791678.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170776774|gb|ACB34913.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 479

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 123/364 (33%), Gaps = 40/364 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q  AI  +L           +     G+GKT    + +   + AG           
Sbjct: 24  PTPIQAQAIPAVLAG------GDLLAGAQTGTGKTAGFTLPLLHKLAAGEPVKNRNGRPA 77

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q  E ++ Y +  Q+   +I G +    +   L +       I++ 
Sbjct: 78  IRALILTPTRELAAQVEESVRTYGKYLQLTSMVIFGGVGMGPQVDRLRK----GVDILVA 133

Query: 382 THALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D      I   ++   ++DE  R      +   +K      +L       ++L+
Sbjct: 134 TPGRLLDHHQQGTIDLSQVQFFVLDEADRMLDMGFVHDIKK------VLAIIPAKKQSLL 187

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++    +I  + ++    KP    +   N   E I +  + +    K   +   I+ + 
Sbjct: 188 FSATFSDEIKALADRLLN-KPQVIEVARRNTTAETIAQRVIKVGRENKKDLLAHLIKSQN 246

Query: 497 ESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +    R          S   IHG  S   +   +  FK G   +L+AT +
Sbjct: 247 WHQVLVFTRMKHGANRLCEFLNKNDISAMAIHGNKSQGARTKALAEFKTGDLTVLVATDI 306

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              GID+     +I     +     +H++ GR GR       + L              +
Sbjct: 307 AARGIDIDMLPHVINYELPNVPEDYVHRI-GRTGRAGAQGEALSLVCVDEEGFLADIEKL 365

Query: 611 LKNT 614
           +K +
Sbjct: 366 IKRS 369


>gi|315604272|ref|ZP_07879338.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313978|gb|EFU62029.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 699

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 74/353 (20%), Positives = 134/353 (37%), Gaps = 48/353 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAP 329
           PT  Q +AI  +L+          +     G+GKT    + + A V+A     QA+++AP
Sbjct: 60  PTPIQAAAIPPLLE------LRDVVGIAQTGTGKTAAFGLPLLAIVDADERDVQALVLAP 113

Query: 330 IGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q  + I+ +      + V  + G  P   +  AL+R     A +++GT     D
Sbjct: 114 TRELAMQSAQAIEDFAARAARLDVVPVYGGSPYGPQIGALKR----GAQVVVGTPGRVID 169

Query: 389 SIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+   L L  V        DE  R G  + ++             +A P  R   L S 
Sbjct: 170 LIEKGALDLSNVRMLVLDEADEMLRMGFAEDVETIA----------SAVPAQRLTALFSA 219

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-- 498
                 +   +   + P+K  +   +   + I +   V+    K   +C  +  + +   
Sbjct: 220 TMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVVPYKHKIGALCRVLATRAQHIA 279

Query: 499 -------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
                          R+ VE  +          A I G ++  ++E +++  K G   +L
Sbjct: 280 RGQEEADAAIVFVRTRADVEEVSLELSARGFRAAGISGDVAQTERERMVERLKTGALDVL 339

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +AT V   G+DV   S+++  +      A +H++ GR GR       +  + P
Sbjct: 340 VATDVAARGLDVERISLVVNFDVPREPEAYVHRI-GRTGRAGRQGRALTFFTP 391


>gi|260495553|ref|ZP_05815678.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_33]
 gi|260196895|gb|EEW94417.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_33]
          Length = 528

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/342 (19%), Positives = 127/342 (37%), Gaps = 34/342 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAP 329
           SPT  Q   I  +L     KN    I Q   G+GKT    + +    E     QA+++ P
Sbjct: 30  SPTPIQRLTIPALL-----KNDKDIIGQAQTGTGKTAAFSLPIIENFENLEHIQAIVLTP 84

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +   + + ++ V  + G      +RK ++        +++GT     D 
Sbjct: 85  TRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKT----GVDVVVGTPGRVIDL 140

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTL--VL 437
           I+   L L  +        DE    G  + +   LT       +L  +AT     +    
Sbjct: 141 IERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRMLFFSATMPEEIMKVAK 200

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIEEKK 496
             + + ++  +  +       + +   +N  D+     +++ L++       C    +  
Sbjct: 201 NHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGIIFCRTKTDVN 260

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           E   R     +++           +HG +    +E  +  FK     +L+AT V   GID
Sbjct: 261 EIVGRLNDRGYDA---------EGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + D S +I         + +H++ GR GR  +  + I    P
Sbjct: 312 INDLSHVINYAIPQEVESYVHRI-GRTGRAGKEGTAITFITP 352


>gi|58268226|ref|XP_571269.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|74684726|sp|Q5KFM6|DBP2_CRYNE RecName: Full=ATP-dependent RNA helicase DBP2-A
 gi|57227504|gb|AAW43962.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 540

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 137/375 (36%), Gaps = 45/375 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           +R + F+ P+  Q  A    L           +   + GSGKT+   +     + A    
Sbjct: 125 IRRMGFTAPSSIQCQAWPMALSGRD------LVAIAETGSGKTISFCLPAMVHINAQPLL 178

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G   +I+AP   LA Q      K+ Q+++I    I G  P+  + + L+R      
Sbjct: 179 APGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDLQR----GV 234

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLM 426
            I + T     D ++  K        L++   D     G + +++    Q       LL 
Sbjct: 235 EICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLLF 294

Query: 427 TATPIP--RTLVLTSLGDIDISKI----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           +AT     + L +  L D     I                V    ++  +++  L+ +  
Sbjct: 295 SATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEKISQ 354

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           E  K                R   +    L      ++AI HG     +++ V+  FK+G
Sbjct: 355 ENGKVLIFVAT--------KRVADDLTKFLRMDGWPALAI-HGDKQQAERDWVLAEFKSG 405

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +++AT V   G+DV D   +I  +  +     +H++ GR GR     +    +    
Sbjct: 406 RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRI-GRTGRAGRKGTSYTYFTMDN 464

Query: 601 SKNSYTRLSVLKNTE 615
           SK +   + +L+ ++
Sbjct: 465 SKAARELVQILRESK 479


>gi|58268224|ref|XP_571268.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|57227503|gb|AAW43961.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 527

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 137/375 (36%), Gaps = 45/375 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           +R + F+ P+  Q  A    L           +   + GSGKT+   +     + A    
Sbjct: 112 IRRMGFTAPSSIQCQAWPMALSGRD------LVAIAETGSGKTISFCLPAMVHINAQPLL 165

Query: 321 ----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
               G   +I+AP   LA Q      K+ Q+++I    I G  P+  + + L+R      
Sbjct: 166 APGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDLQR----GV 221

Query: 377 HIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLM 426
            I + T     D ++  K        L++   D     G + +++    Q       LL 
Sbjct: 222 EICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLLF 281

Query: 427 TATPIP--RTLVLTSLGDIDISKI----TEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
           +AT     + L +  L D     I                V    ++  +++  L+ +  
Sbjct: 282 SATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEKISQ 341

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           E  K                R   +    L      ++AI HG     +++ V+  FK+G
Sbjct: 342 ENGKVLIFVAT--------KRVADDLTKFLRMDGWPALAI-HGDKQQAERDWVLAEFKSG 392

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +++AT V   G+DV D   +I  +  +     +H++ GR GR     +    +    
Sbjct: 393 RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRI-GRTGRAGRKGTSYTYFTMDN 451

Query: 601 SKNSYTRLSVLKNTE 615
           SK +   + +L+ ++
Sbjct: 452 SKAARELVQILRESK 466


>gi|34763211|ref|ZP_00144175.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|256846171|ref|ZP_05551629.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_36A2]
 gi|27887121|gb|EAA24228.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|256719730|gb|EEU33285.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_36A2]
          Length = 528

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/342 (19%), Positives = 127/342 (37%), Gaps = 34/342 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAP 329
           SPT  Q   I  +L     KN    I Q   G+GKT    + +    E     QA+++ P
Sbjct: 30  SPTPIQRLTIPALL-----KNDKDIIGQAQTGTGKTAAFSLPIIENFENLEHIQAIVLTP 84

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +   + + ++ V  + G      +RK ++        +++GT     D 
Sbjct: 85  TRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKT----GVDVVVGTPGRVIDL 140

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTL--VL 437
           I+   L L  +        DE    G  + +   LT       +L  +AT     +    
Sbjct: 141 IERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRMLFFSATMPDEIMKVAK 200

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIEEKK 496
             + + ++  +  +       + +   +N  D+     +++ L++       C    +  
Sbjct: 201 NHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGIIFCRTKTDVN 260

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           E   R     +++           +HG +    +E  +  FK     +L+AT V   GID
Sbjct: 261 EIVGRLNDRGYDA---------EGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + D S +I         + +H++ GR GR  +  + I    P
Sbjct: 312 INDLSHVINYAIPQEVESYVHRI-GRTGRAGKEGTAITFITP 352


>gi|295097653|emb|CBK86743.1| ATP-dependent RNA helicase CsdA [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 631

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 161/439 (36%), Gaps = 47/439 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLSGRDV------LGMAQTGSGKTAAFSLPLLNNIDPDLRA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E + +++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + +    +I      R  I      +  + +    ++ + +E   A  I
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAII 250

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +LIAT
Sbjct: 251 FVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDILIAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 609 SVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
             +K T     I E +L   +   +  +         +   +  + + +LL   +  A+ 
Sbjct: 362 RTMKLT-----IPEAELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSQIQPVAE- 415

Query: 666 ILTQDPDLTSVRGQSIRIL 684
              ++ D+ ++    +++ 
Sbjct: 416 --GEELDMETLAAALLKMA 432


>gi|148550055|ref|YP_001270157.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148514113|gb|ABQ80973.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 627

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 133/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPAGHPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q ++  K Y ++  ++   I G +    + +A+ +       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNPQIQAIAK----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D      +    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ + +K     P +  + P N   E IE+    L    K   +   I 
Sbjct: 187 NLLFSATFSKDITDLADK-LLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     E    + A IHG  S   +   +  FK  + ++L+A
Sbjct: 246 LGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSVRVLVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVEEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             V K       IA+ DL
Sbjct: 365 ERVTKQ-----RIADGDL 377


>gi|46124853|ref|XP_386980.1| hypothetical protein FG06804.1 [Gibberella zeae PH-1]
 gi|91206556|sp|Q4I7K4|DED1_GIBZE RecName: Full=ATP-dependent RNA helicase DED1
          Length = 675

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 58/377 (15%), Positives = 129/377 (34%), Gaps = 51/377 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------------- 318
           PT  Q+ +I  +            +     GSGKT   L  + +                
Sbjct: 209 PTPVQKYSIPIVSGGRD------LMACAQTGSGKTGGFLFPILSQAFINGPSAVPANAAG 262

Query: 319 ------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                 +A   ++I+AP   L  Q ++  +K+   + +   ++ G      + + +ER  
Sbjct: 263 QFGRQRKAYPTSLILAPTRELVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQIER-- 320

Query: 373 HGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
                +++ T     D I+  +        L+L   D     G + +++   +       
Sbjct: 321 --GCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGED---- 374

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            M      +TL+ ++    DI  +  +   +  I   +  +    E I +    + +  K
Sbjct: 375 -MPQVQDRQTLMFSATFPRDIQMLA-RDFLKDYIFLSVGRVGSTSENITQKVEYVEDVDK 432

Query: 485 AYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
              +   +              + + +  +    +       IHG  +  ++E  ++ F+
Sbjct: 433 RSVLLDILHSHANGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFR 492

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           NG C +L+AT V   G+D+   + +I  +        +H++ GR GR          ++ 
Sbjct: 493 NGRCPILVATAVAARGLDIPHVTHVINYDLPTDVDDYVHRI-GRTGRAGNTGIATAFFNR 551

Query: 599 PLSKNSYTRLSVLKNTE 615
                    + +LK   
Sbjct: 552 GNRGIVRELMDLLKEAN 568


>gi|327554933|gb|AEB00820.1| vasa-like protein [Penaeus monodon]
          Length = 707

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 132/375 (35%), Gaps = 50/375 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----------- 321
           PT  Q+  I ++   M+ ++ M        GSGKT   L+ M   +              
Sbjct: 288 PTPVQKYTIPNV---MNGRDIM---GCAQTGSGKTAAFLLPMLHHILDNNCPSNAFEEPA 341

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               +++ P   LA Q     +K++ ++     +  G     H+ K +    H   HI++
Sbjct: 342 QPTGLVICPTRELAIQIMREARKFSHSSVAKCCVAYGGAAGFHQLKTI----HSGCHILV 397

Query: 381 GTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRL--------KLTQKATAPHVLLMT 427
            T     D ++     +  L  +++DE  R      L          T   T   + LM 
Sbjct: 398 ATPGRLLDFVEKGKVVFSSLKYLVLDEADRMLDMGFLSSIKTVINHKTMTPTTDRITLMF 457

Query: 428 ATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVII---PINRIDEVIERLKVVLSE 481
           +   P   + L    L +     +    A    +K  ++      +  +++E  + +L  
Sbjct: 458 SATFPNEIQELASAFLNNYLFVVVGSVGAANTDVKQEVLCVPKFEKKAKLVEMCEEILI- 516

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
             +   I   +E+K+ ++F        +           +HG      +E  +  F+ G 
Sbjct: 517 NAEDEKILVFVEQKRVADF------VGTYLCEKNFRATTMHGDRYQAQREQALTEFRTGV 570

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   G+D+    +++  +        +H++ GR GR       I  Y     
Sbjct: 571 YNILVATAVAARGLDIKGIGVVVNYDLPKEIDEYVHRI-GRTGRLGNRGLSISFYDEEAD 629

Query: 602 KN-SYTRLSVLKNTE 615
              +   + VL   E
Sbjct: 630 ACLTKDLVKVLSEAE 644


>gi|320322648|gb|EFW78741.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 442

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 131/351 (37%), Gaps = 38/351 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + +PT  Q  AI  +L           +     G+GKT    + +   +   G  
Sbjct: 16  LEALGYQTPTPVQTQAIPPVLAGRD------LMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+++AP   LA Q +E I++Y ++  +      G +    +   L +      
Sbjct: 70  VAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRK----GV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +++ T     D     ++++ +L  +I+DE  R        L          +    P 
Sbjct: 126 DVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRM-------LDLGFAEELRGIYAVLPK 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  ++        P+   + P N     +++  V + + +KA      
Sbjct: 179 QRQTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVQQWVVTVDKKRKADLFIHL 238

Query: 492 IEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +++ +          R  V++     +    +   IHG      ++  +D FK+   K+L
Sbjct: 239 MKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKIL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +AT V   G+D+ D   ++  +        +H++ GR GR       I L 
Sbjct: 299 VATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGLTGEAISLV 348


>gi|195977782|ref|YP_002123026.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974487|gb|ACG62013.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 538

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 127/341 (37%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   +   QA+++AP 
Sbjct: 25  SPIQELTIPLALEGRDV------IGQAQTGTGKTAAFGLPTLNKIRTADNTIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AH+++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALKS----GAHVVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   L L  V        DE    G        +++       LL +AT P P + + + 
Sbjct: 135 KRKALRLDHVETLILDEADEMLNMGFLEDIEAIISRVPDHRQTLLFSATMPAPIKEIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  ++  K      +    + +   ++     +++  +  +   +  +       
Sbjct: 195 FMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVQQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D+ 
Sbjct: 249 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR  +    I    P 
Sbjct: 307 GVTHVYNYDITQDPESYVHRI-GRTGRAGKSGESITFVSPN 346


>gi|169602158|ref|XP_001794501.1| hypothetical protein SNOG_03958 [Phaeosphaeria nodorum SN15]
 gi|160706094|gb|EAT89163.2| hypothetical protein SNOG_03958 [Phaeosphaeria nodorum SN15]
          Length = 623

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 61/377 (16%), Positives = 135/377 (35%), Gaps = 51/377 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGG--------- 322
           PT  Q+ +I  +   M  ++ M        GSGKT   L  +   A + G          
Sbjct: 151 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILAQAFQNGPSPPPTAQAG 204

Query: 323 ----------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                      ++I+AP   L  Q ++  +K+   + +   ++ G      + + +ER  
Sbjct: 205 GYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIER-- 262

Query: 373 HGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
                +++ T     D I+  +        L+L   D     G + +++   +       
Sbjct: 263 --GCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRIVEGED---- 316

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            M  T   +TL+ ++    DI  +  +   ++ I   +  +    E I +    + +  K
Sbjct: 317 -MPPTAGRQTLMFSATFPRDIQMLA-RDFLKEYIFLSVGRVGSTSENITQKIEYVEDADK 374

Query: 485 AYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
              +   +              + + +  +    +       IHG  +  ++E  ++ F+
Sbjct: 375 RSVLLDILHTHGAGLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFR 434

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G C +L+AT V   G+D+ + + ++  +        +H++ GR GR          ++ 
Sbjct: 435 SGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI-GRTGRAGNTGIATAFFNR 493

Query: 599 PLSKNSYTRLSVLKNTE 615
                    L +LK   
Sbjct: 494 GNRGVVRDLLDLLKEAN 510


>gi|256028357|ref|ZP_05442191.1| ATP-dependent RNA helicase [Fusobacterium sp. D11]
 gi|289766283|ref|ZP_06525661.1| ATP-dependent RNA helicase [Fusobacterium sp. D11]
 gi|289717838|gb|EFD81850.1| ATP-dependent RNA helicase [Fusobacterium sp. D11]
          Length = 528

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/342 (19%), Positives = 127/342 (37%), Gaps = 34/342 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAP 329
           SPT  Q   I  +L     KN    I Q   G+GKT    + +    E     QA+++ P
Sbjct: 30  SPTPIQRLTIPALL-----KNDKDIIGQAQTGTGKTAAFSLPIIENFENLEHIQAIVLTP 84

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +   + + ++ V  + G      +RK ++        +++GT     D 
Sbjct: 85  TRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKT----GVDVVVGTPGRVIDL 140

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTL--VL 437
           I+   L L  +        DE    G  + +   LT       +L  +AT     +    
Sbjct: 141 IERKLLKLNSLKYFILDEADEMLNMGFIEDIEKILTFTNEDKRMLFFSATMPEEIMKVAK 200

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIEEKK 496
             + + ++  +  +       + +   +N  D+     +++ L++       C    +  
Sbjct: 201 NHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGIIFCRTKTDVN 260

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           E   R     +++           +HG +    +E  +  FK     +L+AT V   GID
Sbjct: 261 EIVGRLNDRGYDA---------EGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + D S +I         + +H++ GR GR  +  + I    P
Sbjct: 312 INDLSHVINYAIPQEVESYVHRI-GRTGRAGKEGTAITFITP 352


>gi|224370360|ref|YP_002604524.1| putative helicase of superfamily II [Desulfobacterium autotrophicum
           HRM2]
 gi|223693077|gb|ACN16360.1| putative helicase of superfamily II [Desulfobacterium autotrophicum
           HRM2]
          Length = 402

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 123/370 (33%), Gaps = 42/370 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQAV 325
            PT  Q+ AI  +L+          +     G+GKT    + +   +          + +
Sbjct: 23  EPTPIQDQAIPVVLRGEDV------LAGAQTGTGKTAAFALPILEMLSKTSKRTYTPRCL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q     +   ++  +   ++ G +    +   L++       I++ T   
Sbjct: 77  VLAPTRELAAQVQASFESLGRSLHLRSTVVFGGVGIQPQIDKLKK----GVDILVATPGR 132

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT--PIPR 433
             D      L        +L   D     G    +K  L         LL +AT     +
Sbjct: 133 LLDHAGRRTLDLSKVEILVLDEADRMLDMGFIHDIKKVLKLLPGKRQNLLFSATYSTEIK 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
                 L +  I +++        +   + P+ +  +      ++ +E      +  +  
Sbjct: 193 RFADGLLNNPKIIEVSASNKAADGVTQAVYPVQKTKKRELLSTLIRNENWTKVLVFTRT- 251

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R            A IHG  S   +   +  FKNG+ K L+AT +   
Sbjct: 252 -------KHGANRLTKQLITDGIKAAAIHGNKSQSTRTRALADFKNGSIKALVATDIAAR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     ++  +  +     +H++ GR GR       + L      K       +LK+
Sbjct: 305 GLDIDMLPHVVNYDLPNVPEDYVHRI-GRTGRAGATGIALSLVCSDEQKQLKEIQRLLKH 363

Query: 614 -----TEDGF 618
                T DGF
Sbjct: 364 NIPVKTMDGF 373


>gi|209519764|ref|ZP_03268550.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209499774|gb|EDZ99843.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 466

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/375 (17%), Positives = 131/375 (34%), Gaps = 43/375 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QA 324
           PT  Q  AI  +L           +     G+GKT    + +   +   G        + 
Sbjct: 24  PTPVQVKAIPAVLSGKDV------MAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRARV 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA+Q  +    Y +   +      G +    +   L +       +++ T  
Sbjct: 78  LVLVPTRELAEQVLQSFIDYGKGLDLQFLAAYGGVSINPQMMKLRK----GVDVLVATPG 133

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++Q+ ++  +++DE  R        L          +  A P  R  +L S
Sbjct: 134 RLLDLNRQNAVQFDQVQTLVLDEADRM-------LDLGFARELNAVFAALPARRQTLLFS 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D  +       R P+   + P N     I++  V + +  K       + E    +
Sbjct: 187 ATFTDDIRAMAANILRGPVNISVSPPNATASKIKQWVVPVDKKNKPDLFMHLVAENSWEH 246

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R+ V+   ++ +    ++  IHG      +   ++ FK     +L+AT V   
Sbjct: 247 ALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTREVHMLVATDVAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+ D  ++I  +        +H++ GR GR       + L     +       ++++ 
Sbjct: 307 GLDIDDLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALIRQ 365

Query: 614 T-----EDGFLIAEE 623
           T     E GF  AE 
Sbjct: 366 TLPRKEEPGFE-AEH 379


>gi|182677259|ref|YP_001831405.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633142|gb|ACB93916.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 577

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 136/364 (37%), Gaps = 45/364 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q + ++       + +    ++    GSGKT+   +A+ +A+ A  +        
Sbjct: 21  QPTPVQAAVLE------WEDSNRDLLVSAQTGSGKTIAYGLALGSALLADEKPLPVAPNA 74

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +I+AP   LA Q +  +        + +    G M     R+ L++     AH+++G
Sbjct: 75  PLGLIIAPTRELALQVHRELSWLYAYAGVRLVTCVGGMDPRRERRDLDQ----GAHVVVG 130

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D ++   L        +L   DE    G  + L           LL  A P  R
Sbjct: 131 TPGRLRDHLERGALNLQNLKAVVLDEADEMLDLGFSEDLT---------TLLDAAAPERR 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI  + ++        +V  P     + I+   V +   +  + +   + 
Sbjct: 182 MLLFSATLPRDIVALAQRYQRDAARISVTAPAGGHAD-IDYRLVRVVPDEIPHVVVNLLR 240

Query: 494 EKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           + +        N R       +L      S  ++ G +S  ++   + + + G  ++ +A
Sbjct: 241 QVEAPGAFVFCNTRESSRHLQALLSERGFSAVLLSGELSQNERNRALQALREGRARICVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +  +      H+  GR GR       +LL  P   + +   
Sbjct: 301 TDVAARGIDLPNLGLVIHADLPNDAATLQHR-SGRTGRAGRKGLSVLLASPSRRRRAEQL 359

Query: 608 LSVL 611
           L  L
Sbjct: 360 LKTL 363


>gi|163750030|ref|ZP_02157274.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161330304|gb|EDQ01285.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 436

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 132/364 (36%), Gaps = 45/364 (12%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---- 318
           ++L  + +S PT  Q  AI  IL           +     GSGKT    + +   +    
Sbjct: 24  QVLTALGYSQPTPIQTQAIPAILAGQD------IMAGAQTGSGKTAAFSLPILHKLTEPL 77

Query: 319 ----EAGGQ-----------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
               E   Q                 A+++ P   LA Q +    KY + TQ+   ++ G
Sbjct: 78  LRLDEKNQQESEAPSCSQVPAIRAIRALVLTPTRELALQVHGSFVKYAKLTQLKSALVYG 137

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK 417
            +    + + L         I++ T     D ++   + L  + E   F    R+     
Sbjct: 138 GVSIDAQAQILAA----GVDILVATPGRLLDHLRRGSMSLSEL-EFLVFDEADRMLDMGF 192

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                 ++       +TL+ ++  D  +  +++    R P +  +   N     IE+   
Sbjct: 193 KDEIDAIVKQLPKTRQTLLFSATFDESLYGLSQS-LLRDPKRIEVGERNAAAVEIEQRVY 251

Query: 478 VLSEGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
            +   +K   I   IE  K          +   ++  +            HG +S   +E
Sbjct: 252 AVDSDRKLALITHLIESGKLQQVLIFSRKKVAADKLAANLTKAGIGAQAFHGDLSQGARE 311

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            V+ SFK+G  ++L+AT V   GID++D + ++     +     +H++ GR GR      
Sbjct: 312 KVLQSFKDGEVRVLVATDVAARGIDIIDLNYVVNYELPYKAEDYVHRI-GRTGRAGNKGV 370

Query: 592 CILL 595
            I L
Sbjct: 371 AITL 374


>gi|307309898|ref|ZP_07589548.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|306909616|gb|EFN40110.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|315060597|gb|ADT74924.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           W]
 gi|323378840|gb|ADX51108.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
          Length = 457

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|222144592|gb|ACM46113.1| DDX3/PL10 DEAD-box RNA helicase [Schmidtea polychroa]
          Length = 458

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 130/346 (37%), Gaps = 43/346 (12%)

Query: 301 DVGSGKTLVALIAMAAAVEAGGQ---------------AVIMAPIGILAQQHYEFIKKYT 345
             GSGKT   LI +   +   G                A+I+AP   LA Q YE  +K++
Sbjct: 1   QTGSGKTAAFLIPLLNMMYNDGPGNSLSRTGYKKEYPVALILAPTRELALQIYEEARKFS 60

Query: 346 QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV----- 400
             + +   ++ G     ++ + L +  +    +++ T     D ++  ++ L  +     
Sbjct: 61  YRSLVRPCVVYGGADIRNQLQDLSQGCN----MLVATPGRLSDMLERCRIGLDCIRYLVL 116

Query: 401 ---DEQHRFGVQQRLKLTQKATAP------HVLLMTATPIPRTLVLT--SLGDIDISKIT 449
              D     G + +++   + T          L+ +AT      +L    L D    ++ 
Sbjct: 117 DEADRMLDMGFEPQIRKIVEQTNMPPPGQRQTLMFSATFPKEIQMLASDFLQDYLFLRVG 176

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509
           +  +  + I   I+ ++   E  + L  +L++      I   +E       +   +    
Sbjct: 177 KVGSTSQNITQRIVYVDE-SEKRDHLLDILADIDSESLILVFVET------KRGADSLEG 229

Query: 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE 569
                   +A IHG  S  D+E  +  F++G   +L+AT V   G+D+ +   +I  +  
Sbjct: 230 FLHGEGFRVASIHGDRSQSDRELALQCFRDGRTPILVATAVAARGLDIPNVKFVINYDLP 289

Query: 570 HFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
                 +H++ GR GR   +   I  Y    +  +   + +L    
Sbjct: 290 TDIEEYVHRI-GRTGRVGNLGEAISFYTDKNNNVAKELVDILLEAN 334


>gi|163732640|ref|ZP_02140085.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseobacter litoralis Och 149]
 gi|161394000|gb|EDQ18324.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseobacter litoralis Och 149]
          Length = 703

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 129/355 (36%), Gaps = 38/355 (10%)

Query: 272 SPTKSQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ------- 323
           + T  QE+    ++ Q          ++    GSGKT+   +A+A  +    +       
Sbjct: 16  TLTPVQEAVTAPELAQ-------ADLLVSAQTGSGKTVGFGLAIAPTLLDDQERFGPAGT 68

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LAQQ    +         +V    G M     R+AL+R     AH+++ 
Sbjct: 69  PLALIIAPTRELAQQVARELSWLYAKAGAVVISCVGGMDTRTERRALDR----GAHVVVA 124

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPI 431
           T     D I+           ++L   DE    G +  L+    +       L+ +AT  
Sbjct: 125 TPGRLCDHIKRGNIELANLRAVVLDEADEMLDLGFRDELEFILDEAPKDRRTLMFSATVP 184

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
                L      D  +I      R+        +N     +E   + +    +A      
Sbjct: 185 KAIAKLAESYQRDAQRIATVSENRQHADIEYRALNTHPRDVENAIINVLRFYEAKNAIVF 244

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N R+ V R  +   +   S+  + G ++  ++ + + + ++G  ++ +AT V 
Sbjct: 245 ------CNTRAAVARLTTRFTNRGFSVVALSGELTQSERSNALQALRDGRARVCVATDVA 298

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
             GID+ +  ++I  +        LH+  GR GR        L+  P L   +  
Sbjct: 299 ARGIDLPNLELVIHADLPSNSDTLLHR-SGRTGRAGRKGVSALIVPPKLRSKANR 352


>gi|1054723|emb|CAA31405.1| vasa [Drosophila melanogaster]
          Length = 661

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 133/365 (36%), Gaps = 43/365 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QA 324
           PT  Q+ +I  I            +     GSGKT   L+ + + +            Q 
Sbjct: 268 PTPIQKCSIPVISSGRD------LMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQV 321

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           VI++P   LA Q +   +K+   + + + I+ G     H+ + + R      H++I T  
Sbjct: 322 VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR----GCHVVIATPG 377

Query: 385 LFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLTQ----KATAPHVLLMTATPIP 432
              D +            ++L   D     G  + ++              L+ +AT   
Sbjct: 378 RLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPE 437

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + +    L +     I         +K  I  +N+  +  + ++++    ++A     
Sbjct: 438 EIQRMAGEFLKNYVSVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEIL---SEQADGTIV 494

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            +E K+ ++F        S           IHG      +E  +  FKNG+ K+LIAT+V
Sbjct: 495 FVETKRGADF------LASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV 548

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN-SYTRLS 609
              G+D+ +   +I  +        +H++ GR G           + P   +  +   + 
Sbjct: 549 ASRGLDIKNIKHVINYDMPSKIDDYVHRI-GRTGCVGNNGRATSFFDPEKDRAIAADLVK 607

Query: 610 VLKNT 614
           +L+ +
Sbjct: 608 ILEGS 612


>gi|84392274|ref|ZP_00991701.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84376394|gb|EAP93274.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 428

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/382 (18%), Positives = 130/382 (34%), Gaps = 50/382 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q   I  +L           I   + GSGKT    + +   +             
Sbjct: 30  QPTPIQAQVIPSVLAGRD------LIAGANTGSGKTAAFALPLLQQIHEDAPLDRRAGKG 83

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQAH 377
                +I+ P   LA+Q  + +K Y  +    I    + G +    + +AL     G   
Sbjct: 84  NFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALR----GGTD 139

Query: 378 IIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMT 427
           I++ T     D I        +   L+L   D     G  + L   L    +    LL +
Sbjct: 140 ILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFS 199

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAY 486
           AT   +   LT     D  ++  + A    +   +  + +     +    +   E ++A 
Sbjct: 200 ATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQAL 259

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                       N ++  E              + HG      +  +++ FK+G   +LI
Sbjct: 260 IFV---------NAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLI 310

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL-----YHPPLS 601
           AT +   G+D+    ++I  +        +H++ GR GR  E+   + L     YH    
Sbjct: 311 ATDIAARGLDIEKLPVVINFDLPRSPSDYMHRI-GRSGRAGEVGLALSLIDHEDYHHFTI 369

Query: 602 KNSYTRLSVLKNTEDGFLIAEE 623
                ++ + +   +GF + EE
Sbjct: 370 IEKKNKIRLEREQIEGFEVDEE 391


>gi|95930488|ref|ZP_01313224.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95133528|gb|EAT15191.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 433

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 138/376 (36%), Gaps = 36/376 (9%)

Query: 268 NIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--- 323
            + F   T  QE AI   L             Q   G+GKT   LIA+   +    Q   
Sbjct: 18  QLGFSELTPVQEQAIPLALNGRD------IAAQAQTGTGKTAAFLIALYTRLLNNPQPTS 71

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               A+IMAP   L  Q  E  K    ++ + +  + G +    +R+A  +       I+
Sbjct: 72  ENPRALIMAPTRELVVQICEDAKGLVPDSPLTIHPVYGGVDYDRQRQAFGK----GVDIV 127

Query: 380 IGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T     D  +     + ++ ++++DE  R      +   +      +  + +    +T
Sbjct: 128 VATPGRLIDYAKQKVFSFKRIEVLVIDEADRMFDMGFISDLRFI----LRRLPSYDKRQT 183

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           ++ ++     + ++       +  K  I P     E +E++   +   +K   +   +  
Sbjct: 184 MLFSATLSPRVMELAYDFMN-EAEKVQIEPEQVTAERVEQIVYHVGAKEKIPLLLGLLNG 242

Query: 495 KKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +          N +   +    + +      A I G +S + +  ++  FK G  ++L+A
Sbjct: 243 RMADGRVMVFANTKRDTDYVTRVLQANDVKAAQISGDISQVKRMRILSEFKEGKVQVLVA 302

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GI + D + ++  +        +H++ GR  R       I++    L  +    
Sbjct: 303 TDVASRGIHIEDVTHVVNYDVPQDPEDYVHRI-GRTARAGASGLAIMMADEDLVYHLPAI 361

Query: 608 LSVLKNTEDGFLIAEE 623
              + ++    + AEE
Sbjct: 362 EEYISSSIPSEVPAEE 377


>gi|326524209|dbj|BAJ97115.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 764

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 87/488 (17%), Positives = 168/488 (34%), Gaps = 53/488 (10%)

Query: 173 KIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDE 232
           K +   +         I  D  + +  P +  +   I      KDF    P+   ++ +E
Sbjct: 135 KAVDAGMMEYDSDDNPIVVDKRKIEPIPPLDHS--TIEYEPFTKDFYEEKPSVSGMSVEE 192

Query: 233 LLAGQIALLLMRKQFKKEIGIPINVEG-----KIAQKILRNIPFSPTKSQESAIKDILQD 287
           +    +  L +R           N E       +   I +     PT  Q  A+  +L  
Sbjct: 193 VADY-MKSLAIRVSGFDVPRPVKNFEDCGFPVPLMNAIAKQGYEKPTTIQCQALPIVLSG 251

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYE 339
                    I     GSGKT   ++ M   +        E G   VI AP   LA Q Y 
Sbjct: 252 RD------IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 305

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV- 398
             KK+ +   + V  + G + +  + K L+        I++ T     D ++   L +  
Sbjct: 306 EAKKFAKPYNLQVAAVYGGVSKFEQFKELKSGCE----IVVATPGRLIDLLKMKALRMFR 361

Query: 399 ----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
               ++DE  R          +             P  +TL+ ++     + ++  +   
Sbjct: 362 ATYLVLDEADRMFDLGFEPQIRSIVGQIR------PDRQTLLFSATMPYKVERLA-REIL 414

Query: 455 RKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICP----QIEEKKESNFRSVVERFNS 509
             PI+  +  +   +E I+++  VL    +K  W+       I++     F +   R + 
Sbjct: 415 TDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKMPGMIDDGDVLVFATKKARVDE 474

Query: 510 LHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           +          +A +HG      +   +  FK+G   +L+AT V   G+D+     ++  
Sbjct: 475 VENQLNQHGFKVAALHGDKDQASRMETLQKFKSGIYHVLVATDVAARGLDIKSIKTVVNF 534

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISS-CILLYHPPLSKNSYTRLSVLKNT-----EDGFLI 620
           +        +H++ GR GR  +       L     S+ +   +  L         +   +
Sbjct: 535 DIAKEMDMHIHRI-GRTGRAGDKDGTAYTLITQKESRFAGELVHSLIAAGQDVPNELMDL 593

Query: 621 AEEDLKQR 628
           A +D + R
Sbjct: 594 AMKDGRFR 601


>gi|253574214|ref|ZP_04851556.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846691|gb|EES74697.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 375

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 130/337 (38%), Gaps = 22/337 (6%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAP 329
           PT  Q +AI  +            I+Q   G+GKTL  L+ +   +       QA+I+ P
Sbjct: 26  PTPVQAAAIPVLQSGED------AIVQAQTGTGKTLAFLLPILEKIRPERPEAQALIITP 79

Query: 330 IGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
              LA Q   E  K       + V    G      + + L       A ++IGT     D
Sbjct: 80  TRELAIQITAEARKLAEAMEGLSVLAAYGGQDVERQLRKL----KNGAQLVIGTPGRLLD 135

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++   L L  V         Q L +   A    +L +      +T++ ++    ++ ++
Sbjct: 136 HLRRGSLTLGAVRYLVLDEADQMLHMGFLAEVEEILSL-VPRSRQTMLFSATMPGNVKRL 194

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---NFRSVVE 505
            +    +     +        + I ++ V  ++  K   +   I  ++      F     
Sbjct: 195 AKTYMDKPRDIQIAETSRVTLDSIRQILVECTDRTKQSALIESIRSQRPYLAVIFCRTKR 254

Query: 506 RFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
           R ++L+E   ++      +HG +S   +E VM +F++   +LL+AT V   GIDV   + 
Sbjct: 255 RASTLNEALQAAGFQSDELHGDLSQAKREQVMRAFRSAKLELLVATDVAARGIDVEGVTH 314

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +   +  H   + +H++ GR GR  E    +    P 
Sbjct: 315 VFNYDIPHDVDSYIHRI-GRTGRAGEKGVAVTFAAPK 350


>gi|195147728|ref|XP_002014827.1| GL19380 [Drosophila persimilis]
 gi|194106780|gb|EDW28823.1| GL19380 [Drosophila persimilis]
          Length = 437

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 134/385 (34%), Gaps = 54/385 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------E 319
            PT  Q  AI   LQ+         I   + GSGKTL  LI + + +            +
Sbjct: 31  EPTPIQRQAIPIGLQNRD------IIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVD 84

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G  A+IMAP   LAQQ  E   K+ Q   I   ++ G + +  +   L         I+
Sbjct: 85  QGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQGFRLRLGCE----IV 140

Query: 380 IGTHALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVL---------- 424
           I T     D ++   L+L       +DE  R          QK      +          
Sbjct: 141 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEA 200

Query: 425 ---------LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL 475
                      T     +T++ T+     + ++      R+P    I  + +  E  E++
Sbjct: 201 EDENKLMENFYTKKKYRQTVMFTATMPPAVERLARSYL-RRPSTVYIGSMGKPTERTEQI 259

Query: 476 KVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
             ++ E  K   +   +  K +       N +   +      E    +   +HG      
Sbjct: 260 VYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQ 319

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E  + + K+G   +L+AT V   GID+ D S++I  +         H++ GR GR  + 
Sbjct: 320 REYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTHRI-GRTGRAGKT 378

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNT 614
              I       S   Y     +  +
Sbjct: 379 GCAISFVTKDDSGLFYDLKQCVTAS 403


>gi|113866090|ref|YP_724579.1| ATP-dependent RNA helicase DbpA [Ralstonia eutropha H16]
 gi|113524866|emb|CAJ91211.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
          Length = 469

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 155/447 (34%), Gaps = 65/447 (14%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + +   T  Q +++   L           + Q   GSGKT    +A+   ++     
Sbjct: 27  LAQLGYDEMTPIQAASLPITLAGQD------LVAQAKTGSGKTAAFGLALLHRLDPRRFD 80

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + I++  +    I V  + G  P   +  +L       AHI++
Sbjct: 81  VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGSPMRPQVDSL----IHGAHIVV 136

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D I    L L  +        D     G    +                    
Sbjct: 137 GTPGRILDHIDRGSLDLSGINTLVLDEADRMLDMGFFDDIAYVASRCPKD---------R 187

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I K++ +       ++V +     +  I +    + EG++   +   +
Sbjct: 188 QTLLFSATYPPGIDKLSHRFLRNP--QSVKLEATHDNTTIRQRFYEVEEGERLNTVGRLL 245

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +  +        N ++       L          +HG +   +++ V+  F N +C +L+
Sbjct: 246 DHFRPVSTLAFCNTKARCRELVELLRAQGYQALALHGELEQRERDQVLVQFANRSCSVLV 305

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL------ 600
           AT V   G+D+     +I           +H++ GR GR ++      L           
Sbjct: 306 ATDVAARGLDIAQLEAVINVEITPDPEVHVHRI-GRTGRADQEGWAFSLVSMDEMGRVGN 364

Query: 601 ------SKNSYTRLSVLK-NTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKF 644
                  +  +  L+ L+  + +  L     L+           G+ILG    ++G  K 
Sbjct: 365 LEQHHGGEFEWQPLADLRPASNERLLPPMVTLQMLGGRKEKIRPGDILGALTGEAGFTKE 424

Query: 645 LIAQPELHDS--LLEIARKDAKHILTQ 669
            I +  + +    + + R   +  + +
Sbjct: 425 QIGKINVLEMSTYIAVERSIGREAVKR 451


>gi|206560771|ref|YP_002231536.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
           J2315]
 gi|198036813|emb|CAR52713.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
           J2315]
          Length = 494

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 125/364 (34%), Gaps = 42/364 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 33  TPTPIQAQAIPVVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARH 86

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 87  PVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSAELRR----GVEILI 142

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATP 430
            T     D +Q           L+L   D     G     +  L         LL +AT 
Sbjct: 143 ATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF 202

Query: 431 IPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
                 L  T L +    ++    +    +  ++  +   D+    ++++   G K   +
Sbjct: 203 SGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIV 262

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E      + IHG  + I++   +D+FK G  + L+AT
Sbjct: 263 F--------CNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEALVAT 314

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +   +I  +        +H++ GR GR       + L  P   K      
Sbjct: 315 DVAARGLDIAELPAVINFDLPFSAEDYVHRI-GRTGRAGATGDALSLCSPNERKQLADIE 373

Query: 609 SVLK 612
            ++K
Sbjct: 374 KLIK 377


>gi|161503259|ref|YP_001570371.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864606|gb|ABX21229.1| hypothetical protein SARI_01328 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 457

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 137/358 (38%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + +   T  Q +++  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LNELGYLEMTPVQAASLPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVSLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGVQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKRTVSLDAL-HILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   ++P+   I  ++ +   IE+     S  +K   +   + + +    
Sbjct: 187 WPETIAAISGR-VQQQPMHIDIDTVDALP-AIEQQFFETSAQEKISLLQTLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAAGQSALALHGDLEQRDRDQTLVRFTNGSARILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++         A +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNYELAWDPEAHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQ 361


>gi|156083731|ref|XP_001609349.1| DEAD/DEAH box helicase [Babesia bovis T2Bo]
 gi|154796600|gb|EDO05781.1| DEAD/DEAH box helicase [Babesia bovis]
          Length = 609

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/375 (18%), Positives = 139/375 (37%), Gaps = 48/375 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-VEAGGQA------ 324
            PT  Q+ +I  I   M+ ++ M        GSGKT   L+ +  A ++ G  A      
Sbjct: 171 KPTPIQKHSIPVI---MAGRDLM---ACAQTGSGKTAAFLLPICTAMLKTGPPASRPMQS 224

Query: 325 -----------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                      ++++P   LA Q +   +K+  NT I   ++ G      +   LER   
Sbjct: 225 SYHSRQALPVCLVLSPTRELAMQTFTEARKFIYNTGIRAVVLYGGGEVRRQLYELER--- 281

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               I + T     D ++  ++ L  V     DE  R      L +        V+  ++
Sbjct: 282 -GCDICVATPGRLTDILERNRIGLHCVSYLVLDEADRM-----LDMGFAPQIRQVVEHSS 335

Query: 429 TPI--PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
            P    +T++ ++    +I ++  +   R  +   +  +   +E I +  +   + +K +
Sbjct: 336 MPQEGRQTVMFSATFPKEIQQLA-RDFLRDYLYLAVGRVGSTNEFIRQRLLYADQEQKLH 394

Query: 487 WICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           ++   + E            +   +   S           IHG  S  D+E  +  FK G
Sbjct: 395 YLVKLLRENTNGLVLIFVETKRRADMIESYLLKENFMAVNIHGDRSQQDREEALRLFKTG 454

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+D+ + + +I  +        +H++ GR GR   +     L     
Sbjct: 455 ERPILVATDVAARGLDINNITHVINCDLPANIDDYVHRI-GRTGRAGNVGVATSLVSEKD 513

Query: 601 SKNSYTRLSVLKNTE 615
                  L++L+   
Sbjct: 514 RSILKDLLALLEEAN 528


>gi|156053564|ref|XP_001592708.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980]
 gi|160380639|sp|A7EJY3|DED1_SCLS1 RecName: Full=ATP-dependent RNA helicase ded1
 gi|154703410|gb|EDO03149.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 678

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/379 (16%), Positives = 134/379 (35%), Gaps = 55/379 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGG--------- 322
           PT  Q+ +I  +   M  ++ M        GSGKT   L  +   A + G          
Sbjct: 209 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQAFQTGPSPIPANAAG 262

Query: 323 ----------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                      ++I+AP   L  Q ++  +K+   + +   ++ G      + + +ER  
Sbjct: 263 SFGRTRKAYPTSLILAPTRELVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQMER-- 320

Query: 373 HGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAP--- 421
                +++ T     D I+  +        L+L   D     G + +++   +       
Sbjct: 321 --GCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGV 378

Query: 422 ---HVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
                L+ +AT     + L    L D     +    +  + I   +  +  ID+    L 
Sbjct: 379 QNRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDIDKRSVLLD 438

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           ++ + G     I            + + +  +    +       IHG  +  ++E  ++ 
Sbjct: 439 ILHTHGAGLTLIFV--------ETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEM 490

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           F+NG C +L+AT V   G+D+ + + ++  +        +H++ GR GR          +
Sbjct: 491 FRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI-GRTGRAGNTGISTAFF 549

Query: 597 HPPLSKNSYTRLSVLKNTE 615
           +          + +LK   
Sbjct: 550 NRGNRGVVRDLIELLKEAN 568


>gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300073834|gb|ADJ63233.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 520

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 125/347 (36%), Gaps = 41/347 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           SPT  Q  A+  +L           +     G+GKT    + +   + A  +        
Sbjct: 23  SPTPIQAQAVPAVLSG------GDLLAGAQTGTGKTAGFTLPLLQRLSAMPRQKINGHVP 76

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LA Q  E +++Y +   +    I G +    +   L+R       I++ 
Sbjct: 77  IRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQITLLKR----GVDILVA 132

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPI 431
           T     D +Q           L+L   D     G     R  L         LL +AT  
Sbjct: 133 TPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPPKRQNLLFSATFA 192

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L  + L +  + ++  + +  + I   I P++R  +    +   L +  +   + 
Sbjct: 193 DEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKK--HPMLAHLIKTHQWKQVL 250

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                K  +N     +    L     +++AI HG  S   +   +  FK+G    LIAT 
Sbjct: 251 VFTRTKHGAN-----KLVEQLGRDGITAMAI-HGNKSQSARTKALAEFKDGKLTALIATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +   GID+     ++  +  +     +H++ GR GR       + L 
Sbjct: 305 IAARGIDIDQLPHVVNYDLPNVPEDYVHRI-GRTGRAGATGEAVSLV 350


>gi|74693203|sp|Q755N4|DBP2_ASHGO RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 557

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 157/437 (35%), Gaps = 61/437 (13%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE---IGIPINVEGKIAQKILRN 268
           P+  K+F       ++++ DE+          RK+ + +     +P  +           
Sbjct: 72  PKFEKNFYVEHEDVQKMSTDEVEQF-------RKENEMKIVGHDVPKPIRTFDEAGFPEY 124

Query: 269 I-------PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
           +        F  PT  Q       L           I     GSGKTL   +     + A
Sbjct: 125 VLKEVKEEGFEKPTAIQCQGWPMALSGRD------MIGVAATGSGKTLSYCLPGIVHINA 178

Query: 321 --------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                   G   +++AP   LA Q  +   K+ ++++I    + G +P++ + + L+R  
Sbjct: 179 QPLLSPGDGPVVLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPKSQQIRDLQR-- 236

Query: 373 HGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPH 422
                I+I T     D ++  K        L+L   D     G + +++    Q      
Sbjct: 237 --GVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 294

Query: 423 VLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLK 476
            L+ +AT     + L    L D     I           T    V+   ++ D +++ L+
Sbjct: 295 TLMWSATWPKEVQQLARDYLHDPIQVNIGSLELAASHTITQLGEVVSDFDKRDRLVKHLE 354

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDS 536
           +   +      I         S  R+  E  + L +    ++AI HG     D +  ++ 
Sbjct: 355 IGSKDKDSKIIIL-------HSTKRTCDEITSYLRQDGWPALAI-HGPTPLQDIDCTLND 406

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           ++ G   +++AT V+  GIDV   + +I  +        +H++ GR GR     + I  +
Sbjct: 407 YRTGRSPIMVATDVVARGIDVKGINFVINYDMPGNIEDYVHRI-GRTGRAGATGTAISFF 465

Query: 597 HPPLSKNSYTRLSVLKN 613
                      +S+++ 
Sbjct: 466 TEANKTLGAQLISIMRE 482


>gi|156375512|ref|XP_001630124.1| predicted protein [Nematostella vectensis]
 gi|156217139|gb|EDO38061.1| predicted protein [Nematostella vectensis]
          Length = 446

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 132/382 (34%), Gaps = 45/382 (11%)

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
               I     R     PT  Q       L           +     GSGKTL  ++    
Sbjct: 65  FPDYIQSYFKREGFTEPTMIQAQGWPVALTGR------NLVGIAQTGSGKTLSFILPGIV 118

Query: 317 AVE--------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKAL 368
            +          G   +++ P   LAQQ  E      ++ ++    I G  P+  + + L
Sbjct: 119 HINHQPLLQPGDGPIVLVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPKGPQIREL 178

Query: 369 ERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATA 420
           ER       I I T     D ++  K        L+L   D     G + ++        
Sbjct: 179 ER----GVEICIATPGRLIDMLESRKTNLRRCTYLVLDEADRMLDMGFEPQI-------- 226

Query: 421 PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
              ++    P  +TL+ ++    ++  +           TV       +  I ++  V  
Sbjct: 227 -RTIIDQIRPDRQTLMWSATWPKEVQGLAHDFLSDYVHITVGSLGLTANHKILQIVDVCE 285

Query: 481 EGKKAYWICPQIEE------KKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKE 531
           + +K + +   +EE       K   F     R + L     S       IHG  +  +++
Sbjct: 286 DHEKEHKLLKLLEEIMGEKENKTLIFTETKRRADELTRKLRSDGWPAMCIHGDKAQPERD 345

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
            V+  F+ G   +L+AT V   G+D+ D   +I  +  +     +H++ GR  R +   +
Sbjct: 346 WVLSEFRKGHAPILVATDVASRGLDISDIKFVINFDFPNCTEDYVHRI-GRTARSDRTGT 404

Query: 592 CILLYHPPLSKNSYTRLSVLKN 613
               +    +K +   +SVL+ 
Sbjct: 405 SYTFFTVNNAKQAKELVSVLQE 426


>gi|60501853|gb|AAX22126.1| vasa [Carassius auratus]
          Length = 688

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 128/364 (35%), Gaps = 37/364 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 273 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQRLMADGVAASKFSEV 326

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y    K+   T +   ++ G +   +    +  +  G  +I+
Sbjct: 327 QEPEAIIVAPTRELINQIYLEAGKFAYGTCVRPVVVYGGINTGY---TIREVLKG-CNIL 382

Query: 380 IGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L      ++DE  R          +K        M +    +T
Sbjct: 383 CGTPGRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRKLVGSP--GMPSKEDRQT 440

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE- 493
           L+ ++    DI ++         I   +  +      +E+  + + +  K   +   +  
Sbjct: 441 LMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIIQVDQYSKRDQLLDLLRS 500

Query: 494 -----EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +       S   IHG     ++E  +  F+ G C +L+AT
Sbjct: 501 TGTERTMVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALSDFRTGQCPVLVAT 560

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTR 607
           +V   G+D+     ++  +        +H++ GR GR   I   +  ++P   +  + + 
Sbjct: 561 SVAARGLDIEQVQHVVNFDLPSSIDEYVHRI-GRTGRCGNIRRAVSFFNPESDTPLARSL 619

Query: 608 LSVL 611
             VL
Sbjct: 620 AKVL 623


>gi|60501851|gb|AAX22125.1| vasa-2 [Carassius auratus]
          Length = 677

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 128/364 (35%), Gaps = 37/364 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   + A G         
Sbjct: 262 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQRLMADGVAASKFSEV 315

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y    K+   T +   ++ G +   +    +  +  G  +I+
Sbjct: 316 QEPEAIIVAPTRELINQIYLEAGKFAYGTCVRPVVVYGGINTGY---TIREVLKG-CNIL 371

Query: 380 IGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L      ++DE  R          +K        M +    +T
Sbjct: 372 CGTPGRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRKLVGSP--GMPSKEDRQT 429

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE- 493
           L+ ++    DI ++         I   +  +      +E+  + + +  K   +   +  
Sbjct: 430 LMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIIQVDQYSKRDQLLDLLRS 489

Query: 494 -----EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +       S   IHG     ++E  +  F+ G C +L+AT
Sbjct: 490 TGTERTMVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALSDFRTGQCPVLVAT 549

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTR 607
           +V   G+D+     ++  +        +H++ GR GR   I   +  ++P   +  + + 
Sbjct: 550 SVAARGLDIEQVQHVVNFDLPSSIDEYVHRI-GRTGRCGNIRRAVSFFNPESDTPLARSL 608

Query: 608 LSVL 611
             VL
Sbjct: 609 AKVL 612


>gi|56413419|ref|YP_150494.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362342|ref|YP_002141979.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127676|gb|AAV77182.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197093819|emb|CAR59302.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
          Length = 457

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 137/358 (38%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + +   T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVR------VQARTGSGKTAAFGLGLLHRIDVSLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRQLDHLQKETVSLDAL-HILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   ++PI+  I  ++ +   IE+     S  +K   +   + + +    
Sbjct: 187 WPEAIAAISGR-VQQQPIRIEIDTVDALP-AIEQQFFETSAHEKISLLQTLLSQHQPASC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNYELAWDPEVHVHRI-GRTARAGSSGLAISFCAPEEAQRANILSEMLQ 361


>gi|187960121|ref|NP_001120807.1| nucleolar RNA helicase 2 [Danio rerio]
 gi|169642686|gb|AAI60629.1| Ddx21 protein [Danio rerio]
          Length = 759

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 147/420 (35%), Gaps = 66/420 (15%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---------AV 325
             Q      +            I Q   G+GKT    + +   +++G Q          +
Sbjct: 191 DIQVKTFNAVYDGKD------LIGQARTGTGKTFSFAVPLVEKLQSGDQERRRGRPPKVL 244

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  +  K  T+  ++ V    G      +  A+         +++GT   
Sbjct: 245 VLAPTRELAIQVTKDFKDITR--KLSVTCFYGGSSYNPQIDAIRS----GIDVLVGTPGR 298

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT----ATPIPRTLVLTSLG 441
            +D +Q  KL L  +       V Q L +        +L  +    A   P+TL+ ++  
Sbjct: 299 IRDHLQNNKLDLSQLQHVVLDEVDQMLDMGFAEQVEEILSASYKKDAEQKPQTLLFSATC 358

Query: 442 DIDISKITEKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              +  + +K    + I   +I     +    +E L +     ++A  I   I+    S+
Sbjct: 359 PSWVYDVAKKYMRSQFIHVDLIGKKTQKAATTVEHLAIACHWSQRASVIGDVIQVYSGSH 418

Query: 500 FR-------SVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            R              SL+     S   +HG +    +E  +  F+NG+ ++L+AT V  
Sbjct: 419 GRTIVFCETKKEATELSLNTSIKQSAQSLHGDIPQKQREVTLKGFRNGSFEVLVATNVAA 478

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+ +  ++I  +  +   + +H+  GR GR      CI  Y                
Sbjct: 479 RGLDIPEVDLVIQSSPPNDVESYIHR-SGRTGRAGRTGICICFY---------------- 521

Query: 613 NTEDGFLIAEEDLKQRKEGEILG-IKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671
                         QRKE   L  ++Q     F          +++ + KDA   L   P
Sbjct: 522 --------------QRKEESQLKFVEQKAGITFKRVGVPTAYDIIQSSSKDAVRFLDSVP 567


>gi|118582049|sp|Q0UWA6|DED1_PHANO RecName: Full=ATP-dependent RNA helicase DED1
          Length = 696

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 61/377 (16%), Positives = 135/377 (35%), Gaps = 51/377 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGG--------- 322
           PT  Q+ +I  +   M  ++ M        GSGKT   L  +   A + G          
Sbjct: 224 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILAQAFQNGPSPPPTAQAG 277

Query: 323 ----------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                      ++I+AP   L  Q ++  +K+   + +   ++ G      + + +ER  
Sbjct: 278 GYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIER-- 335

Query: 373 HGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
                +++ T     D I+  +        L+L   D     G + +++   +       
Sbjct: 336 --GCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRIVEGED---- 389

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            M  T   +TL+ ++    DI  +  +   ++ I   +  +    E I +    + +  K
Sbjct: 390 -MPPTAGRQTLMFSATFPRDIQMLA-RDFLKEYIFLSVGRVGSTSENITQKIEYVEDADK 447

Query: 485 AYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
              +   +              + + +  +    +       IHG  +  ++E  ++ F+
Sbjct: 448 RSVLLDILHTHGAGLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFR 507

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +G C +L+AT V   G+D+ + + ++  +        +H++ GR GR          ++ 
Sbjct: 508 SGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI-GRTGRAGNTGIATAFFNR 566

Query: 599 PLSKNSYTRLSVLKNTE 615
                    L +LK   
Sbjct: 567 GNRGVVRDLLDLLKEAN 583


>gi|254577027|ref|XP_002494500.1| ZYRO0A02948p [Zygosaccharomyces rouxii]
 gi|238937389|emb|CAR25567.1| ZYRO0A02948p [Zygosaccharomyces rouxii]
          Length = 557

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/381 (17%), Positives = 138/381 (36%), Gaps = 39/381 (10%)

Query: 260 KIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           ++A  I++N+ +  PT  Q +A+ ++      K     +     GSGKTL  LI +   +
Sbjct: 164 QMADAIVKNLKYHEPTPIQRAAVPNV----CNKKFRDLLGIASTGSGKTLAFLIPILMKI 219

Query: 319 EA------------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
           +             G  A+I+AP   LAQQ  +  ++         E+ +  +   H  +
Sbjct: 220 DQLPSRPLVLKKMDGPLALILAPTRELAQQIEKEAEELIDAWGKNCEVAS--IVGGHSIE 277

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRL--KLTQ 416
            +         I++ T     D ++ +         L+L   D     G ++++   L  
Sbjct: 278 EISLQVSQGTDILVATPGRLIDCLENHVLTLGKVETLVLDEADRMIDMGFEEQVTSILGN 337

Query: 417 KATAPHVLLMTA--TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                  ++ TA  TP    +    L +     ++        I+ ++  I   ++  +R
Sbjct: 338 LTQKRQTMMFTASMTPGTEKIAAGYLKNPVRVTVSGSQGSTPMIRQLVEHIGSEEQRFQR 397

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           +   L + +    I    +   +             ++     + +++G  S   +E  +
Sbjct: 398 IVEFLPQYRAPIIIFINYKRAADW-------LVQKFYKETQYKVTVLYGSKSQEQREQSL 450

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
              + G  +++IAT V   G+DV D S++I           +H++ GR GR     + I 
Sbjct: 451 QLLRKGKVQIMIATNVAARGLDVPDVSLVINFQLSKTFEDYVHRI-GRTGRAGHEGTAIT 509

Query: 595 LYHPPLSKNSYTRLSVLKNTE 615
                  +        L+   
Sbjct: 510 FLDDEDPELVKELYKYLQENN 530


>gi|126175289|ref|YP_001051438.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|153001611|ref|YP_001367292.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|160876347|ref|YP_001555663.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|217972460|ref|YP_002357211.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|125998494|gb|ABN62569.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|151366229|gb|ABS09229.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160861869|gb|ABX50403.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|217497595|gb|ACK45788.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|315268537|gb|ADT95390.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 433

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 121/354 (34%), Gaps = 27/354 (7%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------AVEAGGQAV 325
           T  Q+ AI  I +          +     G+GKT    + +           +++  + +
Sbjct: 25  TPIQQQAIPAIRRGQDV------LASAQTGTGKTAAFALPILQKMVENPSETLKSNARVL 78

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  + +  Y +     V  I G +    + + L+R     A +I+ T   
Sbjct: 79  ILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKLKR----GADVIVATPGR 134

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             + +    L L  VD         R+     +     +L       + L+ ++     +
Sbjct: 135 LLEHLTACNLSLSNVD-FLVLDEADRMLDMGFSADIQKILQAVNKKRQNLLFSATFSSAV 193

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRS 502
            K+       KP    +   N   + + ++   + + +K   +   I +K       F +
Sbjct: 194 KKLAND-MMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIGKKNWQQVLVFTA 252

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +  ++L +          ++HG      +   +  F  G  ++L+AT V   G+D+  
Sbjct: 253 TRDAADTLVKELNLDGIPSEVVHGDKGQGSRRRALREFVAGDVRVLVATEVAARGLDIPS 312

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
              ++  +        +H++ GR GR  +    I        +       ++  
Sbjct: 313 LEYVVNYDLPFLAEDYVHRI-GRTGRAGKTGVAISFVSREEERTLADIEKLIGQ 365


>gi|94311500|ref|YP_584710.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93355352|gb|ABF09441.1| ATP-dependent RNA helicase [Cupriavidus metallidurans CH34]
          Length = 634

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 129/358 (36%), Gaps = 45/358 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
           +PT  Q  AI   L           ++    GSGKT   ++     +             
Sbjct: 71  TPTPVQAQAIPAFLAGRD------LLVSSQTGSGKTAAFMLPAIQRISEKPATHRPTEPA 124

Query: 319 --EAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIV-EIITGNMPQAHRRK 366
               G +          +++ P   LA Q  E   KY ++ + IV   I G MP   +  
Sbjct: 125 KRMKGKRPRPSPAQPSLLVLTPTRELALQVTEAAAKYGRHLRRIVCASILGGMPYPKQLA 184

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
            L R+      I++ T     D I+  ++ L  + E   F    R+     A     ++ 
Sbjct: 185 MLARM----PDILVATPGRLLDHIEAGRIDLSAL-EMLVFDEADRMLDMGFADDIDAIVA 239

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +TL+ ++  D  I+++  +   R P +  I         IE+      +     
Sbjct: 240 ATPASRQTLMFSATLDARIAQLASRQL-RDPQRIEIAAARADHSNIEQRLHFTDDMSHKE 298

Query: 487 WICPQIEE----KKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKN 539
            +   +      K+   F +     +SL E  +    S   +HG M+   +   + + + 
Sbjct: 299 RLLDHLLRDASLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRR 358

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           G  ++L+AT V   GIDV D + ++  +        +H++ GR GR       I L +
Sbjct: 359 GNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRI-GRTGRAGRSGVAINLVN 415


>gi|328952772|ref|YP_004370106.1| DEAD/DEAH box helicase domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328453096|gb|AEB08925.1| DEAD/DEAH box helicase domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 415

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 132/367 (35%), Gaps = 39/367 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----GQAVIM 327
           +PT  Q  AI  I+Q          +     G+GKT   ++ +   +  G     +A+++
Sbjct: 23  TPTPIQAKAIPLIMQGHDV------VGLAHTGTGKTAAFVLPILHRLMQGERRQVRALVI 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LAQQ +E I      T +    I G +    +   L+R     A I++       
Sbjct: 77  APTRELAQQIHEAIGTLGSRTGLRSVTIYGGVGFNPQVDKLKR----GAEIVVACPGRLL 132

Query: 388 DS-----IQYYKLILVIVDEQHRFG-----VQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           D      I    L ++++DE  R          R  +    T    LL +AT     L L
Sbjct: 133 DHMNQGTIDLSNLEVLVLDESDRMFDMGFLPDIRKIIKHVPTERQTLLFSATMPDDILHL 192

Query: 438 TSLGDIDISKITEKPAGRK-PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                     +     G    +   + PI +  +    L+++     ++  I  +     
Sbjct: 193 AHEVLKAPVTVQVNNIGPAINVSHRLYPIKQHLKTALLLELLRHTNTESVLIFTRT---- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   +R              + G +S   +++VM+ F+NGT ++L+AT +   GID
Sbjct: 249 ----KHRAKRLGEQLGKAGYRATSLQGNLSQGRRQAVMNGFRNGTFQILVATDIAARGID 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK---- 612
           V   S +I  +      A  H++ GR GR  +                    +VL+    
Sbjct: 305 VTQISHVINYDMPDTIDAYTHRI-GRTGRNTKTGDAFTFITSEDEDMVRRIENVLRTRVR 363

Query: 613 -NTEDGF 618
               DGF
Sbjct: 364 HCILDGF 370


>gi|222084927|ref|YP_002543456.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
 gi|221722375|gb|ACM25531.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
          Length = 636

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 134/350 (38%), Gaps = 46/350 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           + T  Q+S +     D++ K     ++    GSGKT+   +A+A  +  G +        
Sbjct: 22  TLTPVQKSMLDP---DLAGK---DALVSAQTGSGKTVAFGLALAPTLLDGAERFGRAGTP 75

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+ +AP   LA Q    ++   + T   +    G M     ++ALER     AHI++GT
Sbjct: 76  LALAIAPTRELALQVQRELEWLYELTGATIVSCVGGMDMRTEKRALER----GAHIVVGT 131

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP 432
                D I+   L        +L   DE    G ++ L+       T    L+ +AT   
Sbjct: 132 PGRLCDHIRRNSLDISKLKAVVLDEADEMLDLGFREDLEFILETSPTERRTLMFSATVPR 191

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKT-----VIIPINRIDEVIERLKVVLSEGKKAYW 487
               L      D  +I      ++ +        ++P +R + +I  L+    E + A  
Sbjct: 192 SIAKLAENYQRDAVRIASATEAKQHVDIDYRALTVVPSDRENAIINVLRY--YEAQNAIV 249

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C           R+ V    +   +   S+  + G +S  ++   + + ++G  ++ IA
Sbjct: 250 FCST---------RAAVNHLTARFNNRGFSVVALSGELSQSERTHALQAMRDGRARVCIA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           T V   GID+    ++I  +        LH+  GR GR        L+  
Sbjct: 301 TDVAARGIDLPGLDLVIHADIPTNPETLLHR-SGRTGRAGRKGVSALIVP 349


>gi|254413664|ref|ZP_05027434.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes
           PCC 7420]
 gi|196179771|gb|EDX74765.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes
           PCC 7420]
          Length = 464

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 132/349 (37%), Gaps = 34/349 (9%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + F +PT+ Q  AI ++L           + Q   G+GKT    + M   ++    G
Sbjct: 18  LEKLGFDTPTEIQSQAIPELLAGRDV------VAQSQTGTGKTAAFSLPMLEQIDPNARG 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+AP   LA+Q  + I+  T N ++ +  + G      + + L+R     A +++G
Sbjct: 72  VQALILAPTRELARQVADAIRDLTSNRRVGIVTVYGGQSIDRQIRLLQR----NAQMVVG 127

Query: 382 THALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D +    L L  V     DE         +   +K       ++   P  R   
Sbjct: 128 TPGRVIDLLDRGDLKLDQVKWVVLDEADEMLSMGFIDDVKK-------ILKQAPKERQTA 180

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK---KAYWICPQIE 493
             S       +       + P+   +         IE+   ++  G    KA      +E
Sbjct: 181 CFSATMPKAIRDLVNQFLKSPVTVTVELPKATPARIEQRVYMIPRGCSKSKALQPILALE 240

Query: 494 EKKE----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           + +        R       S  +    S+   HG +S   +E ++  F+    + ++AT 
Sbjct: 241 DPEAALIFVRTRRSAAELTSQLQAAGHSVDEYHGDLSQSQRERLLSRFRQSQVRWVVATD 300

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +   G+DV   + +I  +      + +H++ GR GR  +  + I L  P
Sbjct: 301 IAARGLDVDHLTHVINYDLPDQVESYIHRI-GRTGRAGKTGTAISLIQP 348


>gi|126728206|ref|ZP_01744022.1| putative ATP-dependent RNA helicase protein [Sagittula stellata
           E-37]
 gi|126711171|gb|EBA10221.1| putative ATP-dependent RNA helicase protein [Sagittula stellata
           E-37]
          Length = 425

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 125/354 (35%), Gaps = 27/354 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG------GQA- 324
            PT  Q  AI   L        ++ + Q   G+GKT    + +   +          Q  
Sbjct: 19  DPTPIQSQAIPHALNG----RDVMGLAQ--TGTGKTAAFGLPIVTTIMRDQTRPGPKQVH 72

Query: 325 -VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA+Q  + ++ Y  NT + + ++TG      +   L +       +++ T 
Sbjct: 73  GLILAPTRELAKQIVDNLRAYAANTPVKIGLVTGGNSINGQINRLAK----GTDLLVATP 128

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D ++   + L            Q L L        +  +      +T++ ++    
Sbjct: 129 GRLIDLMEQKAVRLDATRFLVLDEADQMLDLGFIHALRQIARVL-PKERQTMLFSATMPK 187

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES----- 498
            +++I        P++  + P  +  E IE+    + +  K   +   ++  +       
Sbjct: 188 QMAEIASAYLT-DPVRIEVTPPGKPVERIEQSVHFVEQKAKTPLLVHHLDLHRTEAALVF 246

Query: 499 -NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +   E+     E    +   IHG  S   ++  + +F+ G   +L+AT V   GID+
Sbjct: 247 ARTKHGAEKLKRHLEDKGFAAGSIHGNKSQGQRDRALKAFREGELTVLVATDVAARGIDI 306

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
                +   +  +     +H++ GR  R     + I              + V+
Sbjct: 307 PSVRYVYNYDLPNVADNYVHRI-GRTARAGRDGTAIAYCSAEEMGEFKAIVKVM 359


>gi|126343381|ref|XP_001380653.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
           [Monodelphis domestica]
          Length = 744

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 134/347 (38%), Gaps = 35/347 (10%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------GQAV 325
             Q  A   + +          I Q   G+GKT    I +   ++            + +
Sbjct: 167 PIQVKAFSPVYEGKD------LIAQARTGTGKTFSFAIPLIEKLQRDQEELKKTRSPKVL 220

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  +  +  T+  ++ V    G  P   +   + R       I++GT   
Sbjct: 221 VLAPTRELANQVAKDFQDITR--KLSVACFYGGTPYQGQINHIRR----GIDILVGTPGR 274

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT----ATPIPRTLVLTSLG 441
            +D +Q  +L L  +       V Q L +        ++  +    +   P+TL+ ++  
Sbjct: 275 IKDHLQSGRLDLSKLRHVVLDEVDQMLDMGFADQVEDIIHGSYKTGSEDNPQTLLFSATC 334

Query: 442 DIDISKITEKPAGRKPIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
              + K+ +K    K  +  ++     +    +E L +     ++A  I   I+    ++
Sbjct: 335 PQWVYKVAKKYMKTKYEEIDLVGKMTQKTATTVEHLAIQCHWSQRAAVIGDVIQVYSGND 394

Query: 500 FRS--VVERFN-----SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
            R+    E        +L+ H   +   +HG ++   +E  +  F+ G+ K+L+AT V  
Sbjct: 395 GRAIIFCETKKNVAEMALNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAA 454

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            G+D+ +  ++I  +      + +H+  GR GR      CI  Y P 
Sbjct: 455 RGLDIPEVDLVIQSSPPQDVESYIHR-SGRTGRAGRTGICICFYQPN 500


>gi|114048383|ref|YP_738933.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889825|gb|ABI43876.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 433

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 129/371 (34%), Gaps = 32/371 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------AVEAGGQAV 325
           T  Q+ AI  I +          +     G+GKT    + +           +++  + +
Sbjct: 25  TPIQQQAIPAIRRGQDV------LASAQTGTGKTAAFALPILQKMVENPSETLKSNARVL 78

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  + ++ Y++     V  I G +    + + L+R     A II+ T   
Sbjct: 79  ILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQKLKR----GADIIVATPGR 134

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             + +    L L  VD         R+           +L       + L+ ++     +
Sbjct: 135 LLEHLTACNLSLSSVD-FLVLDEADRMLDMGFNADIQKILQAVNKKRQNLLFSATFSSAV 193

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRS 502
            K+       KP        N   + + ++   + + +K   +   I +K       F +
Sbjct: 194 KKLAND-MMVKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIGKKNWQQVLVFTA 252

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +  ++L +          ++HG  +   +   +  F +G  ++L+AT V   G+D+  
Sbjct: 253 TRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFMSGKVRVLVATEVAARGLDIPS 312

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN-----T 614
              ++  +        +H++ GR GR  +    I        +       ++       T
Sbjct: 313 LEYVVNFDLPFLAEDYVHRI-GRTGRAGKSGVAISFVSREEERTLADIEKLIGQKIRRIT 371

Query: 615 EDGFLIAEEDL 625
             G+ +   DL
Sbjct: 372 VPGYEVGSRDL 382


>gi|325204407|gb|ADY99860.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240355]
          Length = 457

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 127/368 (34%), Gaps = 34/368 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q +AI   L           +     G+GKT   ++     ++    A        
Sbjct: 26  PTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHP 79

Query: 325 ---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++ P   LA Q  + ++ Y +N  +   ++ G M    +   L         I++ 
Sbjct: 80  VRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCE----IVVA 135

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D ++   + L  V E        R+           ++       +TL+ ++  
Sbjct: 136 TVGRLLDHVKQKNISLNKV-EIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATF 194

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---- 497
              I K+ +      P    +   N  +  +E+  + +   +K   +   I +       
Sbjct: 195 SAPIRKLAQDFMN-APETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLHMNQVI 253

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +  V+R          S   IHG  S   +   +++FK+G+ ++L+AT +   G+
Sbjct: 254 VFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARGL 313

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+ +   +I           +H++ GR GR       I L    + ++       +K   
Sbjct: 314 DIAELPFVINYEMPAQPEDYVHRI-GRTGRAGADGVAISL----MDESEQKMFESIKELT 368

Query: 616 DGFLIAEE 623
              L+ E 
Sbjct: 369 GNKLLIER 376


>gi|255066127|ref|ZP_05317982.1| ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256]
 gi|255049672|gb|EET45136.1| ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256]
          Length = 468

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 64/377 (16%), Positives = 134/377 (35%), Gaps = 47/377 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q +AI   L           +     G+GKT   ++     ++    +        
Sbjct: 25  PTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYATSSTSPAMHP 78

Query: 325 ---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++ P   LA Q  + ++ Y +N  +   ++ G +    +   L         I++ 
Sbjct: 79  VRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRAGCE----IVVA 134

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-- 429
           T     D ++           ++L   D     G     R  +         LL +AT  
Sbjct: 135 TVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKPRQTLLFSATFA 194

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           P  R L    +   +I ++  +      ++  II ++ + +     ++++        + 
Sbjct: 195 PPIRKLAKDFMNAPEIVEVAAQNTTSANVEQHIIAVDALKKRNLLERLIVDLQMNQVIVF 254

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + ++  +   R +V R          +   IHG  S   +   +++FK G+ ++L+AT 
Sbjct: 255 CKTKQSVDQVTRDLVRR--------NLAAQSIHGDKSQQSRLETLNAFKEGSLRVLVATD 306

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +   +I           +H++ GR GR       I L    + K       
Sbjct: 307 VAARGLDIAELPFVINYELPTQPEDYVHRI-GRTGRAGADGVAISL----MDKTEQKMFE 361

Query: 610 VLKNTEDGFLIAEEDLK 626
            +K    G  +A E ++
Sbjct: 362 AIKELT-GNDLAVERIE 377


>gi|254428748|ref|ZP_05042455.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
 gi|196194917|gb|EDX89876.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
          Length = 450

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 141/386 (36%), Gaps = 45/386 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------GGQAV 325
           +PT  Q +AI   L+    +      +    GSGKT   L+ M   +          +A+
Sbjct: 24  TPTPVQTAAIPAALEGRDLR------VVARTGSGKTAAFLLPMLHQLLQYSRPRTDTRAL 77

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + ++   + T I  E++TG      +   + +       I+IGT   
Sbjct: 78  ILLPTRELAQQTLKQVEALGRYTFIKAELLTGGEDFKVQAAKMRK----NPEILIGTPGR 133

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATP---IP 432
             + +    L        +L   D     G    +     +       LL +AT      
Sbjct: 134 LIEHLDAGNLLLQDLEMLVLDESDRMLDMGFNDDVLRLAAECRAERQTLLFSATTGGNAM 193

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
             ++ + L D     +       + +   II  + +      ++ +L+       +    
Sbjct: 194 ENMISSVLRDPKSLVLDSVRDLNESVSQQIITADDVKHKERLVQWLLANETYEKAVVFT- 252

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N R   +R   +       + ++HG     D++  MD  K G  K+L+AT V  
Sbjct: 253 ------NTREQADRLGGVLVASNLKVFVLHGEKDQKDRKLAMDRLKAGAVKVLVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRLSVL 611
            GI V +  ++I  +    G   +H++ GR GR G E ++  L+     +  +  +  + 
Sbjct: 307 RGIHVDNLDLVINFDMPRSGDEYVHRI-GRTGRVGGEGTAISLIAAHEWNLMAGIQRYLR 365

Query: 612 KNTEDGFLIAEEDLKQRKEGEILGIK 637
           +N E   + A         G  LG K
Sbjct: 366 QNFEYRLVEALR-------GNFLGPK 384


>gi|293349333|ref|XP_001060057.2| PREDICTED: rCG25924-like [Rattus norvegicus]
 gi|149019091|gb|EDL77732.1| rCG25924 [Rattus norvegicus]
          Length = 620

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 130/363 (35%), Gaps = 37/363 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
            PT  Q  A   +LQ +        I     G+GKTL  L+     ++        G   
Sbjct: 238 KPTPIQSQAWPIVLQGID------LIGVAQTGTGKTLSYLMPGFIHLDSQPLEQRNGPGM 291

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q      KY+      V +  G      R   ++ ++ G   III T  
Sbjct: 292 LVLTPTRELALQVEAECSKYSYGDLKSVCVYGGG----DRDGQIQDVSKG-VDIIIATPG 346

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      +    +  +++DE  +           K      +L+   P  +T++ ++
Sbjct: 347 RLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMK------ILLDVRPDRQTIMTSA 400

Query: 440 LGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
                + ++ +       I  V    ++ ++ + + I              ++     + 
Sbjct: 401 TWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIITTEEEKRTHIQTFLENMSPKD 460

Query: 496 KESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           K   F S     + L         S+  +HG     D+E  +++FK G  ++LIAT +  
Sbjct: 461 KVIVFVSRKAVADHLSSDLILRHISVESLHGNREQSDREKALENFKTGKVRILIATDLAS 520

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV D + +   +        +H++ GR GR       I L      + +   +++L+
Sbjct: 521 RGLDVHDITHVYNYDFPRNIEEYVHRV-GRTGRAGRTGMSITLITRNDWRIATELINILE 579

Query: 613 NTE 615
              
Sbjct: 580 RAN 582


>gi|113868657|ref|YP_727146.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
 gi|113527433|emb|CAJ93778.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
          Length = 646

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 78/396 (19%), Positives = 134/396 (33%), Gaps = 59/396 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
           +PT  Q  AI   L           ++    GSGKT   ++     +             
Sbjct: 80  TPTPVQAQAIPAFLAGRD------LLVSSQTGSGKTAAFMLPAIQRISEMPAPQRATEPA 133

Query: 319 --EAGGQ---------AVIMAPIGILAQQHYEFIKKYTQNTQIIV-EIITGNMPQAHRRK 366
               G +          +++ P   LA Q  E   KY +N + IV   I G MP   +  
Sbjct: 134 KRMKGKRPRPSPAQPALLVLTPTRELALQVTEAAAKYGRNLRRIVCASILGGMPYPKQLA 193

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKA 418
           AL ++      I++ T     D I   +        L+    D     G    +     A
Sbjct: 194 ALAKM----PDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLDMGFADDIDAIVNA 249

Query: 419 TA--PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
           T      L+ +AT   R   L S    D  +I         I       + I++ +    
Sbjct: 250 TPATRQTLMFSATLDARIAQLASRQLRDPQRIE--------IAAARADQSHIEQRLHFTD 301

Query: 477 VVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESV 533
            +  + +    +      K+   F +     +SL E  +    S   +HG M+   +   
Sbjct: 302 DMSHKERLLDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRT 361

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           + + + G  ++L+AT V   GIDV D + ++  +        +H++ GR GR     + I
Sbjct: 362 LTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRI-GRTGRAGRSGTAI 420

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRK 629
            L +                  D  +I  E L+ R+
Sbjct: 421 NLVNHNDMFQWKRIERFTNQRIDASVI--EGLEPRR 454


>gi|49475813|ref|YP_033854.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
 gi|49238621|emb|CAF27864.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
          Length = 460

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/359 (20%), Positives = 140/359 (38%), Gaps = 37/359 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            P   QE AI      M + + +L I Q   GSGKTL   + + + + A          +
Sbjct: 29  KPKPIQEQAIPM----MLKGHDILGIAQ--TGSGKTLAFSLPILSQILALGDKRFPKTAR 82

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  E I+   + T +   +I G +    R K ++R+  G   I+I T 
Sbjct: 83  ALILAPTRELAVQIDETIRAVAKGTHLSTCLIFGGVS---RLKQIKRMEAG-VDILIATP 138

Query: 384 ALFQDSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
              +D I+   + L       +DE  R      +   +       ++     + +T + +
Sbjct: 139 GRLRDLIREKYVDLSQSRFLILDEADRMLDMGFIHDIRH------IVKLLHQVRQTALFS 192

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +    +I+ +  K     P+K  + P       I +    +   +K   +   +      
Sbjct: 193 ATMPKEITTLA-KCLLNDPVKIEVSPQGTTAAEIAQKLYCVPTCEKKNVLGKLLTNPDFV 251

Query: 498 -----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  +   +           S+A IHG  S   ++S + +F+  + ++L+AT +  
Sbjct: 252 SVIVFTRTKYCADAVTRNLASRGYSVATIHGNKSQSARQSALKAFRERSVRILVATDIAA 311

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            GID+   S +I  +      + +H++ GR GR       + L+   + +     +  L
Sbjct: 312 RGIDIPGISHVINYDLPDEAESYVHRI-GRTGRNGASGEALTLFDEGVEQMRLRAVERL 369


>gi|191171034|ref|ZP_03032585.1| ATP-independent RNA helicase DbpA [Escherichia coli F11]
 gi|190908766|gb|EDV68354.1| ATP-independent RNA helicase DbpA [Escherichia coli F11]
          Length = 457

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 133/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA ++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQAFVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  ++        + L +        V+   A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICF-APASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|73996620|ref|XP_863121.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 7 [Canis familiaris]
          Length = 810

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 83/403 (20%), Positives = 142/403 (35%), Gaps = 50/403 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQAVIMAP 329
            PT  Q  AI   LQ+         I   + GSGKT   LI +   +    G  A+I+AP
Sbjct: 413 EPTPIQRQAIPIGLQNRD------IIGVAETGSGKTAAFLIPLLMPLFLNQGPYAIILAP 466

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LAQQ  E   K+ +   I    + G + +  +   L         I+I T     D 
Sbjct: 467 TRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCE----IVIATPGRLIDV 522

Query: 390 IQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATP-------------- 430
           ++   L+L      ++DE  R          Q     H+ +    P              
Sbjct: 523 LENRYLVLSRCTYVVLDEADRMIDMGFEPDVQ-KILEHMPVSNQKPDTDEAEDPEKMLAN 581

Query: 431 -------IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
                    +T++ T+     + ++      R+P    I    +  E +E+   ++SE +
Sbjct: 582 FESGKHKYRQTVMFTATMPPAVERLARSYL-RRPAVVYIGSAGKPHERVEQKVFLMSESE 640

Query: 484 KAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF 537
           K   +   +E+  +       N +   +      E    +   +HG      +E  + + 
Sbjct: 641 KRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNL 700

Query: 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           K G   +L+AT V   GID+ D S+++  +        +H++ GR GR  +    I    
Sbjct: 701 KAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRI-GRTGRAGKSGVAITFLT 759

Query: 598 PPLSKNSYTRLSVLKN---TEDGFLIAEEDLKQRKEGEILGIK 637
              S   Y     +     +     +A     Q K G IL  K
Sbjct: 760 KEDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTKK 802


>gi|308501725|ref|XP_003113047.1| hypothetical protein CRE_25460 [Caenorhabditis remanei]
 gi|308265348|gb|EFP09301.1| hypothetical protein CRE_25460 [Caenorhabditis remanei]
          Length = 852

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 77/465 (16%), Positives = 156/465 (33%), Gaps = 49/465 (10%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM----RKQFKKEIGIP 254
            P I  +   I  P   K+F       +RL Y +++  Q  + L     +          
Sbjct: 213 LPDIDHS--QIQYPAFNKNFYEEHEDIKRLHYMDVVRLQNTMNLRVGGLKPPRPVCSFAH 270

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            + +  + + I ++    PT  Q  AI   +           +     GSGKT   L   
Sbjct: 271 FSFDKLLMEAIRKSEYEQPTPIQAMAIPSAISGRDV------LGIAKTGSGKTAAYLWPA 324

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +          G  AVI+ P   LA Q ++  K++ +   I V    G   +  +  
Sbjct: 325 IVHIMDQPDLKSGEGPVAVIVVPTRELAIQVFQEAKRFCKVYNINVICAYGGGSKWEQSN 384

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGV----QQRLKL 414
            L+      A +++ T     D ++           L+    D     G      Q   L
Sbjct: 385 ELQNE---GAEMVVCTPGRIIDLVKMGSTNFLRTTFLVFDEADRMFDMGFGMLFIQDPYL 441

Query: 415 TQKATAPHVLLMTA---TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEV 471
             K ++   +   +    P  + L+ ++     + ++  + A   P++ V   +   +  
Sbjct: 442 KYKKSSEAQVKSISDHVRPDRQCLMFSATFKQKVERLA-RDALVDPVRIVQGEVGEANAD 500

Query: 472 IERLKVVLS-EGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHG 523
           IE+   V+  +  K +W+   + E             +   E      +     + ++HG
Sbjct: 501 IEQKVFVMQSQEVKFHWLIRNLVEFASIGKVLIFVTKKLDAEDVAKKLKLKDFEVILLHG 560

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            M   ++   +  F+     +L+AT V   G+D+ +   +I  +        +H++ GR 
Sbjct: 561 DMLQAERNDNLLKFRK-KSPILVATDVAARGLDIAEIRTVINFDMARDIDTHVHRI-GRT 618

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
           GR     +   L      +     +  L++          DL  +
Sbjct: 619 GRAGHKGTAYTLVTEKDIEMVGHLVKNLESVSQEVPKPLLDLAMK 663


>gi|307548813|dbj|BAJ19133.1| vasa [Misgurnus anguillicaudatus]
          Length = 644

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 126/364 (34%), Gaps = 37/364 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +   +   G         
Sbjct: 223 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQRLMTDGVAASKFSEV 276

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K+   T +   ++ G     +    +  +  G  +++
Sbjct: 277 QEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGTNTGY---TIREVLKG-CNVL 332

Query: 380 IGTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
            GT     D I   K+ L      ++DE  R                    M +    +T
Sbjct: 333 CGTPGRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEP--DMRKLVASPGMPSKEDRQT 390

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    DI ++         I   +  +      +E+  + +++  K   +   +  
Sbjct: 391 LLFSATYPEDIQRLAADFLKVDYIFLAVGVVGGACSDVEQSIIQVTQFSKREQLLELLRT 450

Query: 495 KKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +           IHG     ++E  +  F+ G C +L+AT
Sbjct: 451 TGNERTMVFVGTKRSADFIATFLCQEKIPTTSIHGDREQREREKALSDFRTGQCPVLVAT 510

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-PLSKNSYTR 607
           +V   G+D+     ++  +        +H++ GR GR   I   +  + P P +  + + 
Sbjct: 511 SVAARGLDIEHVQHVVNFDLPSSIDEYVHRI-GRTGRCGNIGRAVSFFDPEPDTPLARSL 569

Query: 608 LSVL 611
           + VL
Sbjct: 570 VKVL 573


>gi|302412236|ref|XP_003003951.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
 gi|261357856|gb|EEY20284.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
          Length = 486

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 129/350 (36%), Gaps = 39/350 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-- 323
             + +  PT  QE +I   L           I   + GSGKT    + +  A+       
Sbjct: 77  EALGYKHPTPIQEKSIPLALAGRDV------IGLAETGSGKTAAFALPVLQALLEKPSGL 130

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            AV+MAP   LA Q  +  +       +   +I G +    +  AL +    + H+++ T
Sbjct: 131 FAVVMAPTRELAAQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGK----KPHVVVAT 186

Query: 383 HALFQDSIQ------YYKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATPI 431
                D ++         L  +++DE  R     FG      L       H  L +AT  
Sbjct: 187 PGRLLDHLEKTKGFSLRSLKYLVLDEADRLLDMDFGPSIDKILKFIPRERHTYLFSATMS 246

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----NRIDEVIERLKVVLSEGKKAYW 487
            +   L      D ++++ +  G + + T++       + + +V     +    G+    
Sbjct: 247 SKVESLQRASLKDPARVSVQSNGYQVVSTLLQNFLFIPHALKDVYCVHLINSFIGQTTIV 306

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
               + +          +R   L      S   +HG++S   +   ++ F+ G+  +L+A
Sbjct: 307 FLRTVHD---------TQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDILVA 357

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           T V   G+D+ +  ++I  +        +H++ GR  R  +    + L  
Sbjct: 358 TDVAARGLDIPNVDVVINYDLPQDSKTYIHRV-GRTARAGKSGRALSLVT 406


>gi|196001667|ref|XP_002110701.1| hypothetical protein TRIADDRAFT_50105 [Trichoplax adhaerens]
 gi|190586652|gb|EDV26705.1| hypothetical protein TRIADDRAFT_50105 [Trichoplax adhaerens]
          Length = 722

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 94/485 (19%), Positives = 165/485 (34%), Gaps = 76/485 (15%)

Query: 195 QKKSFPSIAEAFNIIHNPRKAKDFEWTSPAR-----ERLAYDELLAGQ--IALLLMRKQF 247
           QKK+              ++ KD E     R     +R+AYDE    Q  +  +  R   
Sbjct: 214 QKKNQSRFYGDLLAERRTKEEKDMERDRINREKNKEKRVAYDERHWTQKDLDEMTERDWR 273

Query: 248 KKEIGIPINVEG----------------KIAQKILRNIPF-SPTKSQESAIKDILQDMSQ 290
                  I+ +G                K    I+ ++ +  PT  Q  AI   LQ+   
Sbjct: 274 IFREDYNISTKGGSIPNPLRAWSESELSKELLDIISDLKYNEPTPIQRQAIPIGLQNRD- 332

Query: 291 KNRMLRILQGDVGSGKTLVALIAMA------------AAVEAGGQAVIMAPIGILAQQHY 338
                 I   + GSGKT   LI +             A ++ G  A+IMAP   LAQQ  
Sbjct: 333 -----IIGVAETGSGKTAAFLIPLLVWITSLPKIVREADIDQGPYAIIMAPTRELAQQIE 387

Query: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398
           E   ++ +   I    + G + +  +   L +       I+I T     D +    L+L 
Sbjct: 388 EEAARFGKPVGIRTVAVIGGLNREEQGFLLRQGCE----IVIATPGRLLDVLDNSYLVLN 443

Query: 399 I-----VDEQHRFGVQQRLKLTQ-------------------KATAPHVLLMTATPIPRT 434
                 +DE  R          Q                         + L       +T
Sbjct: 444 QCTYVVLDEADRMIDMGFEPDVQSILEYLPVSNQKPDTDDAQDPNKIRLKLGDKNRYRQT 503

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVII---PINRIDEVIERLKVVLSEGKKAYWICPQ 491
           ++ T+     + ++      R  +  +     P   +++++  +K    + KK   +   
Sbjct: 504 VMFTATMPPPVERLARSYLRRPAVVYIGSAGKPTESVEQIVHMMKNENDKRKKLVTLLKT 563

Query: 492 IEE--KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           +E       N +   +      E      A +HG  S   +E  ++  K+G+  +L+AT 
Sbjct: 564 LESPIIIFVNQKKGCDVLAKSLEKIGYRSATLHGGKSQDQRELALNGLKSGSKDILVATD 623

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GID+ D   +I  +      +  H++ GR GR  +  + I       S   Y    
Sbjct: 624 VAGRGIDIRDVQYVINYDMAKSIESYTHRI-GRTGRAGKTGTAITFLTNDDSGVFYDLKQ 682

Query: 610 VLKNT 614
           +L ++
Sbjct: 683 LLLSS 687


>gi|217419732|ref|ZP_03451238.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           576]
 gi|217397036|gb|EEC37052.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           576]
          Length = 485

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 130/369 (35%), Gaps = 42/369 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
             + ++ PT  Q  AI  +L           +     G+GKT    + +   + A     
Sbjct: 17  NELGYTQPTPIQAQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHAFYAEN 70

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             I++ T     D +Q           L+L   D     G    +K  L +       LL
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLL 186

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L  + L    + ++  +    + I   I P++R  +      ++     
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNW 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  +         +    R          S   IHG  S   +   +  FK+ T +
Sbjct: 247 FQVLVFTRT--------KHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQ 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT +   GID+     ++  +  +     +H++ GR GR       + L      + 
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKQL 357

Query: 604 SYTRLSVLK 612
                 ++K
Sbjct: 358 LRDIERLIK 366


>gi|168067781|ref|XP_001785785.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662575|gb|EDQ49411.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 395

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 133/371 (35%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+ A+  I+           I Q   G+GKT +  + +   ++      QA+I++
Sbjct: 44  KPSAIQQRAVMPIISGRD------AIAQAQSGTGKTSMIALTVCQMIDIATREVQALILS 97

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        +      G        + LE       H++ GT     D
Sbjct: 98  PTRELAAQTEKVILAIGDFMNVQAHACIGGKSIGEDIRKLEY----GVHVVSGTPGRVYD 153

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        IL   DE    G + ++            V+L++AT     L +T
Sbjct: 154 MIKRRTLRTRSIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLVSATLPHEILEMT 213

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           +    D  +I  K      + IK   + + R +   + L  +       +A   C     
Sbjct: 214 NKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT--- 270

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+           +++ +HG M   +++++M  F++GT ++LI T V   G
Sbjct: 271 ------KRKVDWLTEKMRSNNFTVSAMHGDMPQKERDAIMAEFRSGTTRVLITTDVWARG 324

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S++I  +  +     +H++ GR GR       I        +            
Sbjct: 325 LDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVRSDDIRILRDIEQYYSTQ 383

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 384 IDEMPMNVADL 394


>gi|148973902|ref|ZP_01811435.1| ATP-dependent RNA helicase DbpA [Vibrionales bacterium SWAT-3]
 gi|145965599|gb|EDK30847.1| ATP-dependent RNA helicase DbpA [Vibrionales bacterium SWAT-3]
          Length = 459

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 153/445 (34%), Gaps = 62/445 (13%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ ++  T  Q  ++  IL           I QG  GSGKT    + +   +      
Sbjct: 19  LDSLGYTEMTPIQALSLPTILNGKDV------IGQGKTGSGKTAAFGLGVLQNLRVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 73  VQSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 128

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++  +        L+L   D     G Q  L           ++  A    
Sbjct: 129 GTPGRILDHLEKGRIDLSELNTLVLDEADRMLEMGFQDAL---------DAVIDAAPKER 179

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I  + ++   R P    +   +    + +    +     +   +   +
Sbjct: 180 QTLLFSATFPKQIKSVADR-IMRNPEMVKVESTHDHSSIQQHFYKLEGSEARDDALELLL 238

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              +        N +  V+       H   S+  +HG M   +++  +  F N T  +L+
Sbjct: 239 LHHQPESAVVFCNTKKEVQNVTDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV +   +            +H++ GR GR       I  +          
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRI-GRTGRAGSKGVAISFFSEKEMYRVAQ 357

Query: 607 RLSVL---------------KNTEDGFLIAEED---LKQRKEGEILG--IKQSGMPKFLI 646
               +               K      +  + D     + + G+ILG    Q G+    +
Sbjct: 358 IDEYMDMPIEPSELPAKPIAKPYYSNMVTIQIDGGKKAKLRAGDILGALTGQGGIDGKSV 417

Query: 647 AQPELHD--SLLEIARKDAKHILTQ 669
            +  L    + + + R  AK  L +
Sbjct: 418 GKINLFAMRAYVAVERSVAKKALNK 442


>gi|198427069|ref|XP_002129152.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
           [Ciona intestinalis]
          Length = 452

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 127/355 (35%), Gaps = 31/355 (8%)

Query: 259 GKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   + L N+ F  PT  Q + I  ILQ                GSGKT    + +   
Sbjct: 13  NEWIIQHLGNLGFNKPTPIQYNCIPPILQGKD------CFGCSKTGSGKTAAFALPVLQK 66

Query: 318 VEA---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374
           +     G   +++ P   LA Q  E      +   I   +I G M    +   L++    
Sbjct: 67  LSEDPYGIFCLVLTPTRELAYQISEQFTLIGKPINIRTSVIVGGMDIIQQAYELQK---- 122

Query: 375 QAHIIIGTHALFQDSIQ--YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           + HI+I T     D ++     +  +++DE  R   +    L    T    L+ ++ P  
Sbjct: 123 KPHIVIATPGRLADLLRSNENNVKFLVLDEADRLLDK----LDGDFTNDLNLIFSSLPKE 178

Query: 433 RTLVLTSLGDIDIS----KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
           R  +L S    D      +++ K          +  ++ +D+    L   + +G   Y  
Sbjct: 179 RQTLLFSATLTDTLNEVKELSTKSPFFWQSDNKVSTVDNLDQRYILLPEHIRDGYLVYIC 238

Query: 489 CPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +E++               +    L +       ++H  M   ++ + +  FK+   
Sbjct: 239 KDLLEKQPTRSIMIFTKTCKNCQVLGMLLQKAGFQCVVLHSLMKQRERLTALSRFKSSNT 298

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +LL+AT V   G+D+    ++I  N        +H++ GR  R       I L  
Sbjct: 299 RLLVATDVAARGLDIPVVQVVINHNVPGLAKNYIHRV-GRTARAGRSGISITLVT 352


>gi|160942681|ref|ZP_02089924.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446036|gb|EDP23039.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
           M21/2]
          Length = 641

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 131/348 (37%), Gaps = 38/348 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q +AI  +L           +     G+GKT    + M   + A         +A
Sbjct: 23  TPSPIQAAAIPPVLAGRD------LMGCAQTGTGKTAAFALPMLDRLTANAPRRKGAVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E  + Y +  ++   +I G + QA + +AL++       I+I    
Sbjct: 77  LILTPTRELALQIGESFEAYGKYLKLRSTVIFGGVGQAPQVEALKK----GVDILIACPG 132

Query: 385 LFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D I         L + ++DE  R      +   +K      ++       + L+ ++
Sbjct: 133 RLNDLIGQGFIDLSALEIFVLDEADRMLDMGFVHDVKK------VIAKLPAQRQNLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY---WIC-----PQ 491
               +I ++        P    + P++   + I++    + +G K     W+      P 
Sbjct: 187 TMPAEIEQLAA-GILHDPAFVKVDPVSSTVDRIQQSLYYVEKGNKKLLLPWLIKNLQPPV 245

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +     S  +   ++            A IHG  S   + + ++ FK+G  ++L+AT + 
Sbjct: 246 VNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALEDFKSGKTRVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             GID+ + S +   +        +H++ GR  R     + +    P 
Sbjct: 306 ARGIDISELSHVFNYDLPEVPETYVHRI-GRTARAGADGTAVSFCAPE 352


>gi|304410127|ref|ZP_07391746.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307302161|ref|ZP_07581919.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304351536|gb|EFM15935.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306914199|gb|EFN44620.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 433

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 121/354 (34%), Gaps = 27/354 (7%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------AVEAGGQAV 325
           T  Q+ AI  I +          +     G+GKT    + +           +++  + +
Sbjct: 25  TPIQQQAIPAIRRGQDV------LASAQTGTGKTAAFALPILQKMVENPSETLKSNARVL 78

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  + +  Y +     V  I G +    + + L+R     A +I+ T   
Sbjct: 79  ILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKLKR----GADVIVATPGR 134

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             + +    L L  VD         R+     +     +L       + L+ ++     +
Sbjct: 135 LLEHLTACNLSLSNVD-FLVLDEADRMLDMGFSADIQKILQAVNKKRQNLLFSATFSSAV 193

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRS 502
            K+       KP    +   N   + + ++   + + +K   +   I +K       F +
Sbjct: 194 KKLAND-MMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIGKKNWQQVLVFTA 252

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +  ++L +          ++HG      +   +  F  G  ++L+AT V   G+D+  
Sbjct: 253 TRDAADTLVKELNLDGIPSEVVHGDKGQGSRRRALREFVAGDVRVLVATEVAARGLDIPS 312

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
              ++  +        +H++ GR GR  +    I        +       ++  
Sbjct: 313 LEYVVNYDLPFLAEDYVHRI-GRTGRAGKTGVAISFVSREEERTLADIEKLIGQ 365


>gi|255021847|ref|ZP_05293857.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC
           51756]
 gi|254968671|gb|EET26223.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC
           51756]
          Length = 429

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 122/359 (33%), Gaps = 39/359 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QAV 325
           T  Q  AI +IL+          +     G+GKT    + +   +            +A+
Sbjct: 42  TPIQARAIPEILKGHD------ILAAAQTGTGKTAAFALPILHRLARDPVSSGPRPVRAL 95

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  + I+ Y     +   ++ G +    + + L       A I++ T   
Sbjct: 96  ILVPTRELAAQVEDNIRLYRGQMPVRSLMLIGGVKIGPQMEQLRN----GADIVVATPGR 151

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT--PIPR 433
             D +Q   L        +L   D     G     R  +         LL +AT  P  R
Sbjct: 152 LLDHLQQRSLRLDRVETLVLDEADRMLDMGFIRDIRRIIGMLPAKRQNLLFSATFSPEIR 211

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L    L      ++T   A    I   +I +++  +    L + L +  + + +     
Sbjct: 212 QLAEGLLHQPIAVEVTPANATVDSITQRVIRVDQERK--RDLLLHLMDAHQWHQVLIFTR 269

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   +R     E    S   IHG  S   +   +  FK+G+ + L+AT +   
Sbjct: 270 T------KHGADRLARQMEREGFSAMAIHGNKSQGARTRALAEFKSGSLRALVATDIAAR 323

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           GID+     ++           +H++ GR GR  E    + L              +L+
Sbjct: 324 GIDIQRLPRVVNFELPQVAEDYVHRI-GRTGRAGEDGEAVSLVSGEERSQLQAVERLLR 381


>gi|303320765|ref|XP_003070377.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240110073|gb|EER28232.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 827

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 135/388 (34%), Gaps = 55/388 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------------ 319
            P+  Q +AI   LQ+         I     GSGKT   L+ +   +             
Sbjct: 409 DPSPIQRAAIPIALQNRD------LIGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEWRK 462

Query: 320 -AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G  A+I+AP   LAQQ     +K+       V  I G      +  +L       A I
Sbjct: 463 SDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSLEEQSFSLRN----GAEI 518

Query: 379 IIGTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLT--------------- 415
           II T     D I+   L+L           D     G ++ +                  
Sbjct: 519 IIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDTEE 578

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            + A A    L       +T++ T+     + +I  K   R  I T+      +D V +R
Sbjct: 579 AEDARAMSQHLGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAVDTVEQR 638

Query: 475 LKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           ++ +  E K+   +   +   +         N +   +      +    S   +HG  + 
Sbjct: 639 VEFISGEDKRKKRLADILASGEFRPPIIVFVNIKRNCDAVARDIKQMGYSSVTLHGSKTQ 698

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +E+ + S +NG   +L+AT +   GIDV D S+++  N      +  H++ GR GR  
Sbjct: 699 EQREAALASVRNGNTDVLVATDLAGRGIDVSDVSLVVNFNMATNIESYTHRI-GRTGRAG 757

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +    I       +   Y    +L  + 
Sbjct: 758 KSGVAITFLGNEDADVMYDLKQMLMKSS 785


>gi|237742838|ref|ZP_04573319.1| ATP-dependent RNA helicase [Fusobacterium sp. 4_1_13]
 gi|229430486|gb|EEO40698.1| ATP-dependent RNA helicase [Fusobacterium sp. 4_1_13]
          Length = 528

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/342 (19%), Positives = 127/342 (37%), Gaps = 34/342 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAP 329
           SPT  Q   I  +L     KN    I Q   G+GKT    + +    E     QA+++ P
Sbjct: 30  SPTPIQRLTIPALL-----KNDKDIIGQAQTGTGKTAAFSLPIIENFENLEHIQAIVLTP 84

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +   + + ++ V  + G      +RK ++        +++GT     D 
Sbjct: 85  TRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKT----GVDVVVGTPGRVIDL 140

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTL--VL 437
           I+   L L  +        DE    G  + +   LT       +L  +AT     +    
Sbjct: 141 IERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRMLFFSATMPDEIMKVAK 200

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIEEKK 496
             + + ++  +  +       + +   +N  D+     +++ L++       C    +  
Sbjct: 201 NHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGIIFCRTKTDVN 260

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           E   R     +++           +HG +    +E  +  FK     +L+AT V   GID
Sbjct: 261 EIVGRLNDRGYDA---------EGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + D S +I         + +H++ GR GR  +  + I    P
Sbjct: 312 INDLSHVINYAIPQEVESYVHRI-GRTGRAGKEGTAITFITP 352


>gi|242767802|ref|XP_002341440.1| DEAD/DEAH box RNA helicase [Talaromyces stipitatus ATCC 10500]
 gi|218724636|gb|EED24053.1| DEAD/DEAH box RNA helicase [Talaromyces stipitatus ATCC 10500]
          Length = 1175

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 152/432 (35%), Gaps = 67/432 (15%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ++  + +  PT  Q  A+  I+           I     GSGKT+  L+ M   ++    
Sbjct: 556 VISKLGYENPTSIQSQALPAIMSGRDV------IGVAKTGSGKTISFLLPMFRHIKDQHP 609

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G   +IM P   LA Q ++  K + +   +      G  P   +   L+R     
Sbjct: 610 LENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKR----G 665

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A I++ T     D +           ++  V++DE  R           K      ++  
Sbjct: 666 AEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMK------IMAN 719

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K    KP++ ++   + +   I ++  V +E  K   
Sbjct: 720 IRPNKQTVLFSATFPRNMEALARKTLN-KPVEIIVGGRSVVAPEITQIVEVRNENTKFLR 778

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  +SL             IHG    ID++S + 
Sbjct: 779 LLELLGNLYSDEANEDARTLIFVDRQEAADSLLRELMRKGYPCMSIHGGKDQIDRDSTIA 838

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    +++  +A +     +H+  GR GR     + +  
Sbjct: 839 DFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 897

Query: 596 YHPPLSKNSYTRLSVLKNTE-----------DGFLIAEEDLKQRKEGEILGIKQSGM--P 642
                 + S      LK +            D F      L++ K G+      SG    
Sbjct: 898 LTEDQERYSVDIAKALKQSGQAVPEPVQKLVDSF------LEKVKAGK-EKASASGFGGK 950

Query: 643 KFLIAQPELHDS 654
                  E   +
Sbjct: 951 GLERLDQERDAA 962


>gi|149371676|ref|ZP_01891092.1| RNA helicase [unidentified eubacterium SCB49]
 gi|149355303|gb|EDM43863.1| RNA helicase [unidentified eubacterium SCB49]
          Length = 419

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 131/375 (34%), Gaps = 41/375 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q  AI  IL+          +     G+GKT    + M   +           +A
Sbjct: 23  TPSPIQAKAIPKILEGKDV------LASAQTGTGKTAGFSLPMLHIITKQPFQRHRPVKA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + IK Y+  T +   +I G +    + +AL++       I++ T  
Sbjct: 77  LIVTPTRELAAQILKEIKDYSAFTDVRSTVIFGGVNANPQIRALKQ----GTDILVATPG 132

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D          K+  +++DE  R      ++   K      +L       + L+ ++
Sbjct: 133 RLLDLHSQGVFNMKKVEFLVLDEADRMLDMGFVRDINK------ILAILPAKRQNLLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I K+ +      P+       N   E +++     ++  K   +   I E     
Sbjct: 187 TFSKEIKKLAQSFLT-NPVLVEAQRENSTAEKVKQTIYKTNKSAKTNLVIKLITEGNWEQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R            A IHG  S   +   +  FK+G+ ++L+AT +   
Sbjct: 246 VLIFTRTKHGANRLAEKLGKADVKSAAIHGNKSQGARTKALAGFKDGSIRVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+     +I     +     +H++ GR  R       I +      +       +L  
Sbjct: 306 GLDIPLLPHVINYELPNIPEDYVHRI-GRTARAGASGDAISIVSVDEFEYVKGIEKLLGE 364

Query: 614 -----TEDGFLIAEE 623
                T +GF   E+
Sbjct: 365 KLNSITLEGFEQTEK 379


>gi|91210637|ref|YP_540623.1| ATP-dependent RNA helicase DbpA [Escherichia coli UTI89]
 gi|117623595|ref|YP_852508.1| ATP-dependent RNA helicase DbpA [Escherichia coli APEC O1]
 gi|218558330|ref|YP_002391243.1| ATP-dependent RNA helicase DbpA [Escherichia coli S88]
 gi|237705373|ref|ZP_04535854.1| ATP-independent RNA helicase DbpA [Escherichia sp. 3_2_53FAA]
 gi|91072211|gb|ABE07092.1| ATP-independent RNA helicase DbpA [Escherichia coli UTI89]
 gi|115512719|gb|ABJ00794.1| ATP-independent RNA helicase DbpA [Escherichia coli APEC O1]
 gi|218365099|emb|CAR02806.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           S88]
 gi|226900130|gb|EEH86389.1| ATP-independent RNA helicase DbpA [Escherichia sp. 3_2_53FAA]
 gi|294490917|gb|ADE89673.1| ATP-independent RNA helicase DbpA [Escherichia coli IHE3034]
 gi|307627083|gb|ADN71387.1| ATP-dependent RNA helicase DbpA [Escherichia coli UM146]
 gi|323949054|gb|EGB44946.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323956904|gb|EGB52636.1| DEAD/DEAH box helicase [Escherichia coli H263]
          Length = 457

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 136/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q++A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQDAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +    +      S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQSVCDVLNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|317480121|ref|ZP_07939231.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
 gi|316903668|gb|EFV25512.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
          Length = 405

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 123/354 (34%), Gaps = 33/354 (9%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIMA 328
             QE +I  IL+          I     G+GKT   L+ +   +  GG        ++MA
Sbjct: 3   PIQEKSIPVILEGRD------LIAVAQTGTGKTAAYLLPILNKLSEGGHPADAINCIVMA 56

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++ ++    +    + G        +    +  G A ++I T      
Sbjct: 57  PTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKRGLTLG-ADVVIATPGRLIA 115

Query: 389 S-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
                 +   ++   I+DE  R      L +        ++        +T++ ++    
Sbjct: 116 HLSLGYVDLSRVSYFILDEADRM-----LDMGFYDDIMQIVKFL-PKERQTIMFSATMPA 169

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF--- 500
            I ++            V + +++  E I +   V  E +K   I     E+        
Sbjct: 170 KIQQLAGNILNNPAE--VKLAVSKPAEKIVQAAYVCYENQKLGIIRSLFAEETPERVIIF 227

Query: 501 ---RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +  V+      +    ++  +H  +    +E VM  FK G   +L+AT ++  GID+
Sbjct: 228 ASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGIDI 287

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
            D  ++I  +  H     +H++ GR  R       I         N       L
Sbjct: 288 DDIRLVINYDVPHDSEDYVHRI-GRTARANNDGVAITFVSEKEQGNFKNIEKFL 340


>gi|195938012|ref|ZP_03083394.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4024]
          Length = 457

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 133/364 (36%), Gaps = 37/364 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATP 430
            T     D +Q           L++   D     G        +     +   LL +AT 
Sbjct: 128 ATPGRLLDHLQKDTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATW 187

Query: 431 IPRTLVLTSLGDIDISKITEKPAGR-KPIKTVIIPINRIDEV-IERLKVVLSEGKKAYWI 488
                 ++     D   I         PI+      +   ++ + +  + L +       
Sbjct: 188 PEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVF 247

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C       + + ++V +  N + +    S   +HG +   D++  +  F NG+ ++L+AT
Sbjct: 248 CNT-----KKDCQAVCDALNEVGQ----SALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+    +++           +H++ GR  R       I    P  ++ +    
Sbjct: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIIS 357

Query: 609 SVLK 612
            +L+
Sbjct: 358 DMLQ 361


>gi|94969920|ref|YP_591968.1| DEAD/DEAH box helicase-like [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551970|gb|ABF41894.1| DEAD/DEAH box helicase-like protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 423

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 74/392 (18%), Positives = 139/392 (35%), Gaps = 29/392 (7%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
            R++      +P++    + Q++      +PT  QE AI   L           +     
Sbjct: 22  RRQRLTTFNDMPLS--DVLKQRLEAAQFINPTPVQEKAIPPALDGRD------ILATAQT 73

Query: 303 GSGKTLVALIAMAAAVEA----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           G+GKTL  +I     +      G Q +I+ P   LA Q +   ++          ++ G 
Sbjct: 74  GTGKTLAFIIPALEMLRDTEPCGVQVLILVPTRELAMQVHGVYEQLKGKKLKSAALVMGG 133

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
             + ++ +++       A +++ T    +D +    + L  V E        R+      
Sbjct: 134 TSERNQIQSIRS----GARVVVATPGRLEDYMGRRLVDLSQV-EMLVLDEADRMMDMGFL 188

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
            A   +L       +TL  ++     +S I +       ++  I  I +    +E   + 
Sbjct: 189 PAIKRILRALPRDKQTLCFSATMGPAVSGIVQDCL-YNAVRVEIGSILKPAAAVELHAIE 247

Query: 479 LSEGKKAYWICPQIEEKKESN-----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           +    K   +   + E++         +   ER          S A+IHG  S   + + 
Sbjct: 248 VPIMGKKDALRQLLYEQEGKTLVFARTKRGTERLAKELIRDGFSAAMIHGDRSQSQRNAA 307

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           + +F  G+ K+L+AT V   G+DV D + +I  +        +H++ GR GR        
Sbjct: 308 LAAFDKGSIKVLVATDVAARGLDVDDIAHVINFDLPQVPEDFIHRV-GRTGRAGATGMAT 366

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDL 625
            L               LK       IA  DL
Sbjct: 367 SLVSGAEVFELRNIERTLK-----LKIARRDL 393


>gi|90020294|ref|YP_526121.1| ATP-dependent RNA helicase DbpA [Saccharophagus degradans 2-40]
 gi|89949894|gb|ABD79909.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 464

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 138/364 (37%), Gaps = 34/364 (9%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ + + T  Q  ++ +I+           I QG  GSGKT    + +  +++     
Sbjct: 22  LESLGYNTMTPIQAQSLPNIIAGKDV------IGQGKTGSGKTAAFGLGLLNSLDVKRFY 75

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + I++  +    I V  + G MP   +  +LE      AHI++
Sbjct: 76  VQSLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEH----GAHIVV 131

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
           GT    ++ ++   L L      ++DE  R              A   ++ T     +TL
Sbjct: 132 GTPGRVEEHVRKNNLDLSKLSVLVLDEADRMLE------MGFQAALDAIIETMPKQRQTL 185

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++    +I  I  +     P+ T +   +    + +R   V ++ ++   +   + + 
Sbjct: 186 LFSATFPEEIQAIASR-IMTAPVMTQVESTHDTSTIKQRFYKVDNDDQRLLAVRLLLLQH 244

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           K        N +   +           +   +HG +   D++  +  F NG+  +L+AT 
Sbjct: 245 KPESAVVFCNTKRETQMVADDLAGHGFTALALHGDLEQRDRDLTLVRFANGSATVLVATD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR GR         +Y             
Sbjct: 305 VAARGLDIESLDAVINYHIARDMEVHVHRI-GRTGRAGAKGIACSIYSEKEHFKLARLEE 363

Query: 610 VLKN 613
            +  
Sbjct: 364 TMGQ 367


>gi|148244979|ref|YP_001219673.1| ATP-dependent RNA helicase DeaD [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326806|dbj|BAF61949.1| ATP-dependent RNA helicase DeaD [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 608

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 132/369 (35%), Gaps = 43/369 (11%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--- 319
            +L +I +  P+  QE  I  +L +         I Q   G+GKT   ++ +   +    
Sbjct: 25  NVLDSIGYETPSPIQEQCITHLLNNKD------IIGQAQTGTGKTAAFVLPLLDKINLNI 78

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
              Q +I+AP   LA Q  E ++ Y +      V  I G      + + L+R      H 
Sbjct: 79  NAPQLLILAPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRPLKR----GVHA 134

Query: 379 IIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           I+GT     D I+   L L  +        DE  + G    +K   +             
Sbjct: 135 IVGTPGRVMDHIEKKTLKLDNLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQ-------- 186

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +  + ++     I KI ++   +  I  +         + ++  +V     K   +  
Sbjct: 187 -RQIALFSATMPNVIKKIAKQFLNQPKIIKIKTKTETATTITQKYCMVGGLSNKLEALTR 245

Query: 491 QIEEKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            +E             +++             S   I+G +    +E +++ +K G   +
Sbjct: 246 ILEVTVFDAMIIFVRTKTLTTELTEKLSARGFSADAINGDIQQNQRERIINDYKQGKIDI 305

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT +   G+DV   S ++  +      + +H++ GR GR       IL      S   
Sbjct: 306 LIATDIAARGLDVERISHVVNYDIPQDAESYVHRI-GRTGRAGRKGEAILFV----SNRE 360

Query: 605 YTRLSVLKN 613
              L+ +++
Sbjct: 361 RRMLNTIEH 369


>gi|305667304|ref|YP_003863591.1| DEAD box family ATP-dependent RNA helicase [Maribacter sp.
           HTCC2170]
 gi|88709351|gb|EAR01584.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Maribacter sp. HTCC2170]
          Length = 603

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 64/353 (18%), Positives = 135/353 (38%), Gaps = 24/353 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +P++ QE AI  +L+D +       +     G+GKT      +   +++     Q +I++
Sbjct: 24  TPSEVQEKAIPILLEDET-----DLVALAQTGTGKTAAFGFPLIQKIDSESRTTQGLILS 78

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   L  Q    +K Y++  + I V  I G      + + ++R     A I++ T    +
Sbjct: 79  PTRELCLQITNELKLYSKYEKSINVVAIYGGASITEQARQIKR----GAQIVVATPGRMK 134

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR-TLVLTSLGDIDIS 446
           D I    + +  +D        + L +        +L  + TP  + T + ++    ++S
Sbjct: 135 DMISRGLVNITKIDYCILDEADEMLNMGFFEDIKDIL--SNTPDEKSTWLFSATMPREVS 192

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNF 500
            I +K     P +  +   N     ++    V+    +   +    +   +         
Sbjct: 193 VIAKKFM-HSPKEITVGDKNSGATTVQHEYYVVGGRDRYPALKRLADTNPDIFSVVFCRT 251

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           +   +R          +   +HG +S   ++ VM+SF+    ++L+AT V   GIDV D 
Sbjct: 252 KRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNSFRKKQIQMLVATDVAARGIDVDDI 311

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           + +I            H+  GR GR  +    +++      +      + +K 
Sbjct: 312 THVINYQLPDEIETYTHR-SGRTGRAGKSGISMVIVTRSEMRKIKAIENKIKQ 363


>gi|325923904|ref|ZP_08185503.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325545614|gb|EGD16869.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 458

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 84/460 (18%), Positives = 165/460 (35%), Gaps = 63/460 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + ++  T  Q  ++  ILQ +        I Q   GSGKT    + +   ++     
Sbjct: 17  IDALGYTVLTPIQAQSLPPILQGLDV------IAQAPTGSGKTAAFGLGLLQKLDPALTR 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + ++K       + + ++TG MP   +  +LE        +++
Sbjct: 71  AQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEA---HDPQVVV 127

Query: 381 GTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    Q+  +           L+L   D     G ++ ++        H          
Sbjct: 128 GTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKH---------- 177

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R  +L S    DI +   +   + PI+  +   +   E+ ++   V    ++       +
Sbjct: 178 RQSLLFSATFPDIIRTLAREILKDPIEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLL 237

Query: 493 EEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
               E      N R  V+      + F  S   +HG M   D++ V+  F N +C +L+A
Sbjct: 238 RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY-- 605
           + V   G+DV D + ++            H++ GR  R  +    + L     +  +   
Sbjct: 298 SDVAARGLDVEDLAAVVNYELPTDTETYRHRI-GRTARAGKRGLALSLVASRETGRAQAL 356

Query: 606 --------TRLSVLKNTEDGFLI---AEEDLKQ-------RKEGEILG--IKQSGMPKFL 645
                           T     +   A   L+         + G+ILG    ++G+    
Sbjct: 357 EAEQGQPLKWSRAPLATARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAA 416

Query: 646 IAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           I +  ++   S + IAR      L        ++G+  R+
Sbjct: 417 IGKIAIYPTRSYVAIARAHVAKALAHL-HAGKIKGRRFRV 455


>gi|313890723|ref|ZP_07824348.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120824|gb|EFR43938.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 538

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 127/341 (37%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +       QA+++AP 
Sbjct: 25  SPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIRTDENIIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQIKALKS----GAHIVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   L L  V        DE    G        +++       LL +AT P P + + + 
Sbjct: 135 KRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLFSATMPAPIKQIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  +I  K      ++   + +   ++     +++  +  +   +  +       
Sbjct: 195 FMKNPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRLMDVDQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FK     +L+AT V   G+D+ 
Sbjct: 249 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           + + +   +      + +H++ GR GR  +    I    P 
Sbjct: 307 NVTHVYNYDITQDPESYVHRI-GRTGRAGKSGESITFVSPN 346


>gi|104783960|ref|YP_610458.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95112947|emb|CAK17675.1| ATP-dependent RNA helicase RhlE, DEAD box family [Pseudomonas
           entomophila L48]
          Length = 634

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/366 (18%), Positives = 131/366 (35%), Gaps = 42/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +  GG         
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPGGHPDKSQRHG 76

Query: 323 ----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q ++  K Y ++   I   I G +    + +A+ +       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHDSFKVYARDLNFISACIFGGVGMNPQVQAMAK----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+   ++ ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSRVEILVLDEADRMLDMGFIHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ + +K     P +  + P N   E IE+    L    K   +   I 
Sbjct: 187 NLLFSATFSKDITDLADK-LLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     E    + A IHG  S   +   +  FK  T ++L+A
Sbjct: 246 LGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANTVRVLVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I +  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVEEDYVHRI-GRTGRAGRSGEAISMVAPDEEKLLKSI 364

Query: 608 LSVLKN 613
             V K 
Sbjct: 365 ERVTKQ 370


>gi|310767076|gb|ADP12026.1| ATP-dependent RNA helicase RhlE [Erwinia sp. Ejp617]
          Length = 469

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 68/373 (18%), Positives = 131/373 (35%), Gaps = 43/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
            PT  Q  AI  +L           +     G+GKT    + +   + +           
Sbjct: 23  EPTPIQRQAIPVVLAGRD------LMASAQTGTGKTAGFTLPLLQLLSSHNPHPKGRRPV 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E ++ Y++   +   ++ G +    +   L     G   +++ T
Sbjct: 77  RALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMMKLR----GGVDVLVAT 132

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D     ++   K+ ++++DE  R      +           +L       + L+ 
Sbjct: 133 PGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDI------RRVLAKLPAKRQNLLF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I  + EK     P +  +   N   E + +   ++ + +K   +   I     
Sbjct: 187 SATFSDEIKILAEK-LLHNPEQVEVARRNTASEQVTQHVHLVDKKRKRELLSLLIGRGNW 245

Query: 498 SN---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F       N L E         A IHG  S   +   +  FK+G  ++L+AT + 
Sbjct: 246 QQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDGKIRVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ +   ++     +     +H++ GR GR   +   + L      K       VL
Sbjct: 306 ARGIDIEELPHVVNYELPNVPEDYVHRI-GRTGRAAAVGEALSLVCVDEHKLLRDIERVL 364

Query: 612 KN-----TEDGFL 619
           K        DGF 
Sbjct: 365 KREIPRMAIDGFE 377


>gi|164658197|ref|XP_001730224.1| hypothetical protein MGL_2606 [Malassezia globosa CBS 7966]
 gi|159104119|gb|EDP43010.1| hypothetical protein MGL_2606 [Malassezia globosa CBS 7966]
          Length = 653

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 56/381 (14%), Positives = 133/381 (34%), Gaps = 58/381 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
           +PT  Q+ +I  +            +     GSGKT   L  + +A+             
Sbjct: 204 TPTPVQKYSIPIVGAGRD------LMGCAQTGSGKTGGFLFPILSALFTHGPPPMPPQPP 257

Query: 319 EAGGQ-----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
             G Q      +I+AP   L  Q +E  +K+T  + +   ++ G      + + +ER   
Sbjct: 258 MYGRQKAFPSVLILAPTRELVSQIHEEARKFTYRSWVRPAVVYGGAEMGAQLRQIER--- 314

Query: 374 GQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT-----QKATA 420
               ++  T     D I+  +        L+L   D     G + +++            
Sbjct: 315 -GCDMLSATPGRLVDLIERGRISLANVRFLVLDEADRMLDMGFEPQIRRIVLGEDMPGVM 373

Query: 421 PHVLLMTATPIPRTLVLTS------LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
               LM +   P+ + + +         + + ++             +   ++   +++ 
Sbjct: 374 DRQTLMFSATFPQNIQMLAKDFLKEYVFLSVGRVGSTSENITQKIEYVEDRDKQSMLLDV 433

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           L  + + G    ++            + + +  +    +   +   IHG  +  ++E  +
Sbjct: 434 LAAMPTSGLTLIFV----------ETKRMADMLSDFLIYSNIAATSIHGDRTQREREYAL 483

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           D F++G   +L+AT V   G+D+ + + ++  +        +H++ GR GR   I     
Sbjct: 484 DLFRSGRTPILVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRI-GRTGRAGNIGHATA 542

Query: 595 LYHPPLSKNSYTRLSVLKNTE 615
            ++          + +L+   
Sbjct: 543 FFNRNNRNIVRDLVKLLQEAN 563


>gi|296103277|ref|YP_003613423.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057736|gb|ADF62474.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 450

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 130/362 (35%), Gaps = 38/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+ AI  +LQ          +     G+GKT    + +   +             
Sbjct: 23  EPTPIQQQAIPAVLQGRD------LMASAQTGTGKTAGFTLPLLELLVKNQPHAKGRRPV 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E ++ Y++   I   ++ G +    +   L     G   +++ T
Sbjct: 77  RALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMMKLR----GGVDVLVAT 132

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D     +++   + ++++DE  R      +           +L    P  + L+ 
Sbjct: 133 PGRLLDLEHQNAVKLDNVEILVLDEADRMLDMGFIHDI------RRVLAKLPPRRQNLLF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    DI  + EK     P++  +   N   E + +    + + +K   +   I +   
Sbjct: 187 SATFSDDIKALAEK-LLHNPLEVEVARRNTASEQVTQHVHFVDKKRKRELLSHMIGQGNW 245

Query: 498 SN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F       N L E         A IHG  S   +   +  FK+G  ++L+AT + 
Sbjct: 246 QQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ +   ++     +     +H++ GR GR       + L      K       +L
Sbjct: 306 ARGLDIEELPHVVNYELPNVPEDYVHRI-GRTGRAAATGEALSLVCVDEHKLLRDIERLL 364

Query: 612 KN 613
           K 
Sbjct: 365 KK 366


>gi|240141300|ref|YP_002965780.1| putative ATP-independent RNA helicase, DEAD/DEAH-box family protein
           [Methylobacterium extorquens AM1]
 gi|240011277|gb|ACS42503.1| putative ATP-independent RNA helicase, DEAD/DEAH-box family protein
           [Methylobacterium extorquens AM1]
          Length = 568

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 132/376 (35%), Gaps = 38/376 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
            PT  Q++ +  +            ++    GSGKT+   +A+A  +             
Sbjct: 21  EPTPVQQAVLDAV-------PERDLLVSAQTGSGKTVAFGLAIAGTLLGEDETLPPPGAP 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    +      T   +    G M      +ALE       HI++GT
Sbjct: 74  LALVIAPTRELALQVQRELTWLYAQTGARIVPCVGGMDPRREARALEA----GVHIVVGT 129

Query: 383 HALFQDSIQYYKLI--------LVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIP 432
               +D ++  +L+        L   DE    G ++ L+    +T      LL +AT   
Sbjct: 130 PGRLRDHMERGRLVTEGLRAVILDEADEMLDMGFREDLEFILASTPKDRRTLLFSATLPK 189

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
             + L      D  ++      R     V   +  +   +E   V +     A       
Sbjct: 190 AIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNILRYVDAPVAIVF- 248

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N R  V    +       S   + G +   ++ + + + ++G  ++ +AT V  
Sbjct: 249 -----CNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATDVAA 303

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+    ++I  +  H      H+  GR GR     + ++L  P   + +    ++ K
Sbjct: 304 RGIDLPGLDLVIHADLPHDAEVMQHR-SGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIAK 362

Query: 613 NTEDGFLIAEEDLKQR 628
            + D       D + R
Sbjct: 363 VSPDWSGPPNAD-EIR 377


>gi|237736924|ref|ZP_04567405.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817]
 gi|229420786|gb|EEO35833.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817]
          Length = 545

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 123/345 (35%), Gaps = 40/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           I Q   G+GKT    + +    E     QA+++AP
Sbjct: 27  QPTPIQALTIPALLNG-----DKDIIGQAQTGTGKTAAFSLPILENFEPSKVIQAIVLAP 81

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +       +I +  + G      + + L++       II+GT     D 
Sbjct: 82  TRELALQVAEEMNSLAHGKKIRITPVYGGQSIEFQIRQLKK----GTDIIVGTPGRVIDL 137

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTLVLTS 439
           ++   +        IL   DE    G  + ++   +AT     +L  +AT     + +  
Sbjct: 138 MERKLIKLQDLKYFILDEADEMLNMGFVEDIEKILEATNEDKRMLFFSATMPNEIMKIAK 197

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               D   +             +       ++ +++   + E  K   +C  I+  ++  
Sbjct: 198 NHMKDYEVLA------------VKARELTTDLTDQIYFEVHEKDKFEALCRIIDLTRDFY 245

Query: 500 ---FRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
              F       N L             +HG +S   +E  +  FK     +L+AT V   
Sbjct: 246 GIVFCRTKNDANDLVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLVATDVAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           GIDV D S +I  +      + +H++ GR GR  +  + I    P
Sbjct: 306 GIDVNDLSHVINYSIPQEAESYVHRI-GRTGRAGKEGTAITFITP 349


>gi|163853846|ref|YP_001641889.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163665451|gb|ABY32818.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
          Length = 568

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 132/376 (35%), Gaps = 38/376 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
            PT  Q++ +  +            ++    GSGKT+   +A+A  +             
Sbjct: 21  EPTPVQQAVLDAV-------PERDLLVSAQTGSGKTVAFGLAIAGTLLGEDETLPPPGAP 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    +      T   +    G M      +ALE       HI++GT
Sbjct: 74  LALVIAPTRELALQVQRELTWLYAQTGARIVPCVGGMDPRREARALEA----GVHIVVGT 129

Query: 383 HALFQDSIQYYKLI--------LVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIP 432
               +D ++  +L+        L   DE    G ++ L+    +T      LL +AT   
Sbjct: 130 PGRLRDHMERGRLVTEGLRAVILDEADEMLDMGFREDLEFILASTPKDRRTLLFSATLPK 189

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
             + L      D  ++      R     V   +  +   +E   V +     A       
Sbjct: 190 AIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNILRYVDAPVAIVF- 248

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N R  V    +       S   + G +   ++ + + + ++G  ++ +AT V  
Sbjct: 249 -----CNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATDVAA 303

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+    ++I  +  H      H+  GR GR     + ++L  P   + +    ++ K
Sbjct: 304 RGIDLPGLDLVIHADLPHDAEVMQHR-SGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIAK 362

Query: 613 NTEDGFLIAEEDLKQR 628
            + D       D + R
Sbjct: 363 VSPDWSGPPNAD-EIR 377


>gi|39936732|ref|NP_949008.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192292558|ref|YP_001993163.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39650588|emb|CAE29111.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192286307|gb|ACF02688.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 474

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/372 (16%), Positives = 132/372 (35%), Gaps = 27/372 (7%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             +   IA+ +      +PT  Q   I   L           +     G+GKT    + +
Sbjct: 14  FGLADPIARALQEENYHTPTPIQAQTIPLALAGRDV------VGIAQTGTGKTASFALPI 67

Query: 315 AAAVEAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +            + ++++P   L+ Q  +    Y ++  +   +  G +P   + +
Sbjct: 68  LHRLLQNRIKPASKTCRVLVLSPTRELSGQILDSFNAYGRHVHLSAALAIGGVPMGRQVR 127

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLM 426
           +L     G   +++ T     D +Q   L L  V E        R+           ++ 
Sbjct: 128 SL----MGGVDVLVATPGRLLDLVQGNALKLTQV-EFLVLDEADRMLDMGFINDIRKIVA 182

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +TL  ++    DI+ + E+   R P +  + P++   E I +  + L    K  
Sbjct: 183 KLPIKRQTLFFSATMPKDIADLAEQ-MLRDPARVAVTPVSSTVERINQRVIQLDHSAKPA 241

Query: 487 WICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +   +++ K +        +   ++          +   IHG  S   +E V+ +F+ G
Sbjct: 242 ALAQILKDDKVNQALVFTRTKHGADKVVKGLARAGITADAIHGNKSQNYRERVLAAFRTG 301

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             + L+AT +   GIDV   S ++  +  +     +H++ GR  R     + I L     
Sbjct: 302 ELRTLVATDIAARGIDVDGVSHVVNFDLPNIPETYVHRI-GRTARAGADGTAISLCAGEE 360

Query: 601 SKNSYTRLSVLK 612
                    ++K
Sbjct: 361 MAYLRDIEKLIK 372


>gi|224824286|ref|ZP_03697394.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224603705|gb|EEG09880.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 417

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 74/359 (20%), Positives = 120/359 (33%), Gaps = 40/359 (11%)

Query: 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG 321
           AQ  L     +P+  Q SAI  ILQ          +     GSGKT    + +       
Sbjct: 8   AQAALSQGYLAPSAIQTSAIPAILQGRDV------LATAQTGSGKTAAFCLPLLQQWLTS 61

Query: 322 GQ-------AVIMAPIGILAQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRKALERIA 372
            Q       A+I+ P   LA Q    +++   +    + V ++ G +    +  AL    
Sbjct: 62  RQGSPRQVQALILLPTRELAVQVGNTLRELALSLPRRVKVAVVYGGVSINPQMMALR--- 118

Query: 373 HGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRLK--LTQKATAPH 422
            G A I++ T     D I Y          L+L   D     G    L   L        
Sbjct: 119 -GGADIVVATPGRLLDLIGYNALSISTVGTLVLDEADRLLDLGFADELGRLLALLPPYRQ 177

Query: 423 VLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            LL +AT  P   +L    L       I +  A    I    I ++     +    ++ +
Sbjct: 178 NLLFSATFPPAVHSLAEQLLSQPLRIDIAQTAATAPDIHQRAIEVDASQRTMLLRHLLQT 237

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G     +            R   +R     +      A +HG  S   +  V+   K+G
Sbjct: 238 HGWDRVLVFV--------ASRQAADRVTGKLQRAGIRAAALHGDCSQGQRGQVLADLKSG 289

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             ++L+AT V   GID+    +++  +     +   H++ GR GR       I      
Sbjct: 290 QLQVLVATDVAARGIDIPLLPVVVNYDLPRSPVDYTHRI-GRTGRAGARGEAISFISAD 347


>gi|163755350|ref|ZP_02162470.1| putative RNA helicase dead-box protein [Kordia algicida OT-1]
 gi|161324770|gb|EDP96099.1| putative RNA helicase dead-box protein [Kordia algicida OT-1]
          Length = 591

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 132/364 (36%), Gaps = 34/364 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           ++++ F  P++ QE AI  +L           +     G+GKT      +   + A    
Sbjct: 17  IQDMGFETPSEVQEKAIPILLN-----EETDIVALAQTGTGKTAAFGFPLIQKINADSRT 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +I++P   L  Q    +K Y++   I V  I G      + + +++     A I++ 
Sbjct: 72  TQGLILSPTRELCLQITNELKNYSKYENINVVAIYGGASITDQARQVKK----GAQIVVA 127

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPI 431
           T    QD I    +        +L   DE    G  + +      T       L +AT  
Sbjct: 128 TPGRMQDMINRRMVDISKIEYCVLDEADEMLNMGFYEDITSILSHTPDDKSTWLFSATMP 187

Query: 432 PR--TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
               T+    +       +  + +G   ++     ++  D  +   ++  +       + 
Sbjct: 188 REVATIAKKFMHTPQEITVGSRNSGSDSVRHEFYAVSGRDRYLALKRLADANPDIFSVVF 247

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +       R        L E   ++ AI HG +S   ++ VM SF+    ++L+AT 
Sbjct: 248 CRTK-------RDTQNVAEKLIEDGYNAAAI-HGDLSQNQRDLVMKSFRTRQIQMLVATD 299

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   GIDV D + +I            H+  GR GR  +    +++      +   +   
Sbjct: 300 VAARGIDVDDITHVINYQLPDEIETYTHR-SGRTGRAGKNGVSMVIVTKSEMRKIKSIER 358

Query: 610 VLKN 613
            ++ 
Sbjct: 359 KIQK 362


>gi|254486145|ref|ZP_05099350.1| ATP-dependent rna helicase, dead/deah box family [Roseobacter sp.
           GAI101]
 gi|214043014|gb|EEB83652.1| ATP-dependent rna helicase, dead/deah box family [Roseobacter sp.
           GAI101]
          Length = 717

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 75/358 (20%), Positives = 132/358 (36%), Gaps = 44/358 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
           S T  QE+     L D         ++    GSGKT+   +A+A  +         AG  
Sbjct: 16  SLTPVQEAVTDPALAD------ADLLVSAQTGSGKTVGFGLAIAPTLLGESETFGHAGAP 69

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    +         +V    G M     R+AL+R     AH+++ T
Sbjct: 70  LALVIAPTRELAMQVSRELTWLYGPAGAVVTTCVGGMDTRTERRALDR----GAHVVVAT 125

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
                D I+   + L  +        DE    G ++ L+           L  A    RT
Sbjct: 126 PGRLCDHIKRNNINLNDIRAVVLDEADEMLDLGFREELEFI---------LSEAPEDRRT 176

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++     I+K+  K   R   +   I   +    IE   + +        I   +  
Sbjct: 177 LLFSATVPAAIAKLA-KSYQRNAQRVETIGEAKQHTDIEYRALTVHPRDTENAIINVLRF 235

Query: 495 KKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +        N R+ V R  +   +   S+  + G +S  ++ + + + ++G  ++ IAT
Sbjct: 236 YEAKNAIVFCNTRAAVARLTTRFTNRGFSVVALSGELSQSERTNALQALRDGRARVCIAT 295

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
            V   GID+ +  ++I  +        LH+  GR GR        L+    L   +  
Sbjct: 296 DVAARGIDLPNLELVIHADLPSNSDTLLHR-SGRTGRAGRKGVSALIVPAKLRSKANR 352


>gi|148359632|ref|YP_001250839.1| ATP dependent RNA helicase DbpA [Legionella pneumophila str. Corby]
 gi|148281405|gb|ABQ55493.1| ATP dependent RNA helicase DbpA [Legionella pneumophila str. Corby]
          Length = 468

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 80/415 (19%), Positives = 160/415 (38%), Gaps = 59/415 (14%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q  ++  IL++         I Q   GSGKT    + +   ++      QA+++ P 
Sbjct: 35  TPIQMQSLPIILRNED------IIAQAKTGSGKTAAFALCLLNNLKISFFAVQALVLCPT 88

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA+Q  + I++       + +  ++G +P   +  +L       AHII+GT       
Sbjct: 89  RELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLGSLRH----GAHIIVGTPGRILKH 144

Query: 390 IQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           ++   L L  V     DE  R          +       ++       +TL+ ++    +
Sbjct: 145 LKNASLDLSQVKALVLDEADRMLDMGFFDDIKN------IISICPKQRQTLLFSATYPEE 198

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-------- 496
           I +++++         V+ P   ID  IE+    +S   + + +   +            
Sbjct: 199 IKRLSKQFMKDPKEVHVVTPPEEID--IEQHFYEVSRQAQKFPLLKSLLLHYRPVSVLIF 256

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +  +  VE  + L     S+IA+ +G M  I+++  +  F N +C +L+AT V   G+D
Sbjct: 257 CNTKQQTVEVTDQLINEGFSAIAL-NGDMEQIERDLAVLRFANQSCSILVATDVAARGLD 315

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN------------S 604
           + + S +I  +        +H++ GR GR       + +  P  ++              
Sbjct: 316 IKELSAVINFDLAFDHDIHIHRI-GRTGRAGSKGIALSIVTPADAQRICAIEDNYPHPIH 374

Query: 605 YTRLSVLKNTEDG--------FLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQP 649
           +  ++ L+N              IA     + + G+ILG   K +G+    I + 
Sbjct: 375 WGNINELENHNTACLVPEMVTLCIASGKKDKIRPGDILGALTKDAGLAGNTIGKI 429


>gi|19705271|ref|NP_602766.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713234|gb|AAL94065.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 528

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 68/342 (19%), Positives = 127/342 (37%), Gaps = 34/342 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAP 329
           SPT  Q   I  +L     KN    I Q   G+GKT    + +    E     QA+++ P
Sbjct: 30  SPTPIQRLTIPALL-----KNDKDIIGQAQTGTGKTAAFSLPIIENFENLEHIQAIVLTP 84

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +   + + ++ V  + G      +RK ++        +++GT     D 
Sbjct: 85  TRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKT----GVDVVVGTPGRVIDL 140

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTL--VL 437
           I+   L L  +        DE    G  + +   LT       +L  +AT     +    
Sbjct: 141 IERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRMLFFSATMPDEIMKVAK 200

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIEEKK 496
             + + ++  +  +       + +   +N  D+     +++ L++       C    +  
Sbjct: 201 NHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGIIFCRTKTDVN 260

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           E   R     +++           +HG +    +E  +  FK     +L+AT V   GID
Sbjct: 261 EIVGRLNDRGYDA---------EGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + D S +I         + +H++ GR GR  +  + I    P
Sbjct: 312 INDLSHVINYAIPQEVESYVHRI-GRTGRAGKEGTAITFITP 352


>gi|15602977|ref|NP_246049.1| DeaD [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721456|gb|AAK03196.1| DeaD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 610

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 129/349 (36%), Gaps = 36/349 (10%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F  P+  Q+S I ++L           +     GSGKT    + + A ++      
Sbjct: 22  SDLGFETPSPIQQSCIPNLLNGHDV------LGMAQTGSGKTAAFSLPLLAQIDLDKKYP 75

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  + + +  +   +  + G      R     R     A +++G
Sbjct: 76  QMLVMAPTRELAIQVADACEHFCKYAKNTNIVTLYGG----QRYDIQLRALRQGAQVVVG 131

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 132 TPGRILDHIRRGTLDLSNLRFMVLDEADEMLRMGFIDDVETVMAELPEQHQTALFSATMP 191

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I      ++   +    L+ +  E   A  I 
Sbjct: 192 DPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCWYVHGFRKNDALLRFLEVEKFDAAIIF 251

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  +D  +NG+  +L+AT 
Sbjct: 252 TRTKTGTLD--------VTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILVATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           V   G+DV   S+++  +      + +H++ GR GR       +L   P
Sbjct: 304 VAARGLDVERISLVVNYDIPLDAESYVHRI-GRTGRAGRTGRALLFVEP 351


>gi|117921427|ref|YP_870619.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613759|gb|ABK49213.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 433

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/403 (15%), Positives = 138/403 (34%), Gaps = 36/403 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------AVEAGGQAV 325
           T  Q+ AI  I +          +     G+GKT    + +           +++  + +
Sbjct: 25  TPIQQQAIPAIRRGQDV------LASAQTGTGKTAAFALPILQKMVENPSETLKSNARVL 78

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  + ++ Y++     V  I G +    + + L+R     A II+ T   
Sbjct: 79  ILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQKLKR----GADIIVATPGR 134

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             + +    L L  +D         R+           +L       + L+ ++     +
Sbjct: 135 LLEHLTACNLSLSSID-FLVLDEADRMLDMGFNADIQKILQAVNKKRQNLLFSATFSSAV 193

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRS 502
            K+       KP        N   + + ++   + + +K   +   I +K       F +
Sbjct: 194 KKLAND-MMVKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIGKKNWQQVLVFTA 252

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +  ++L +          ++HG  +   +   +  F +G  ++L+AT V   G+D+  
Sbjct: 253 TRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVATEVAARGLDIPS 312

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN-----T 614
              ++  +        +H++ GR GR  +    I        +       ++       T
Sbjct: 313 LEYVVNFDLPFLAEDYVHRI-GRTGRAGKSGVAISFVSREEERTLADIEKLIGQKIRRIT 371

Query: 615 EDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             G+ +   DL  ++    L  ++S   K           + E
Sbjct: 372 VPGYEVGSRDLLLKQ----LQTRRSFAKKQQRLDNVSEQIIAE 410


>gi|302673650|ref|XP_003026511.1| hypothetical protein SCHCODRAFT_62132 [Schizophyllum commune H4-8]
 gi|300100194|gb|EFI91608.1| hypothetical protein SCHCODRAFT_62132 [Schizophyllum commune H4-8]
          Length = 437

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 131/385 (34%), Gaps = 51/385 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q       L+          +   + GSGKTL   I +   +             
Sbjct: 28  EPTPIQACTWPPALEGRDV------VGIAETGSGKTLAFGIPLLNRLITSRSTTTQSAPV 81

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ----AHI 378
            A+++AP   LA Q ++ +    +   I    + G +P+  + + L     G+      +
Sbjct: 82  TALVVAPTRELAIQTHDTLSALGKPFGIASVAVFGGVPKEPQVRMLRNANKGKDGMTTRV 141

Query: 379 IIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-- 431
           ++GT     D +         +  +++DE  R   +      +        +++AT    
Sbjct: 142 VVGTPGRILDLMNDGACDLGNVDYLVLDEADRMLDKGFENDIRN-------IISATKPLA 194

Query: 432 -PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             +TL+ ++     + K+           TV       +  +E++  VL +G++      
Sbjct: 195 ERQTLMFSATWPDSVRKLASTFQNNPVRVTVGSDDLTANSRVEQIVEVLDDGRQKDSRLT 254

Query: 491 QIEEKKESN----------------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
            +                       ++    R          S+  + G MS   +   +
Sbjct: 255 ALLRNANLKKVAAGMDESRVLVFALYKKECSRVEQNLRRQGFSVGGLSGDMSQSARIEAL 314

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           ++FK G   LL+AT V   G+D+ +  +++           +H++ GR GRG +    I 
Sbjct: 315 EAFKTGKTNLLVATDVAARGLDIANVGLVVNYTFPLTIEDYIHRI-GRTGRGGKSGKSIT 373

Query: 595 LYHPPLSKNSYTRLSVLKNTEDGFL 619
            +     + +          + GF 
Sbjct: 374 FFTGEGHERALAGELARVLHDSGFE 398


>gi|223984537|ref|ZP_03634669.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
           12042]
 gi|223963523|gb|EEF67903.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
           12042]
          Length = 556

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 92/480 (19%), Positives = 162/480 (33%), Gaps = 61/480 (12%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
           +N+  ++++ I        T  Q + I  ++           I Q   G+GKT    I +
Sbjct: 6   LNLSPEMSRAIADCGYTEATYIQSACIPVVMNG------GDVIGQSQTGTGKTAAFAIPI 59

Query: 315 AAAVE----AGGQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALE 369
              +E       QA+I++P   LA Q  + I+K+T+    I    + G    + +   L+
Sbjct: 60  IEMLEVTDRKRPQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQILELK 119

Query: 370 RIAHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKAT 419
           +     A I++GT     D I+   L        +L   DE    G ++ ++  +     
Sbjct: 120 K----GADIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQ 175

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERL 475
               +L +AT     L +TS    +   I          K      + P     E++   
Sbjct: 176 QRQTVLFSATMPKPILEITSQYQTNPVHIKTPQTQINTPKIEQVYYVCPKEAKKEIL-MQ 234

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
            + +     A   C           + +V+   S         A +HG M    +  VMD
Sbjct: 235 LISMQNPHLAMIFCNT---------KKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMD 285

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           +FK G   +L+AT V   GIDV    ++   +        +H++ GR GR  +    + L
Sbjct: 286 NFKKGKINILVATDVAARGIDVDSMDVVFNYDLPQESEYYVHRI-GRTGRAGKEGLAVTL 344

Query: 596 YHPPLSKNSYTRLSVLKNTEDGFLIA-------------EEDLKQRKEGEILGIKQSGMP 642
                           ++      +               EDL+ R   ++        P
Sbjct: 345 ITARQKYALRDLERTTRSKLTQKPLPSLEEVRKIRLDFLREDLEHRMTRDV------PEP 398

Query: 643 KFLIAQPELHD--SLLEIARKDAKHILTQDPDLTSVRGQSIRILLYLYQYNEAFQFIRAG 700
              I      D  S  E+A   A  I   +    S    S R  L + +   +   +  G
Sbjct: 399 LAAIIDTMKDDGYSYREMALALAYQIAGHEMFDESAWNASARPALTVTEKGMSELILDIG 458


>gi|254482117|ref|ZP_05095359.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037807|gb|EEB78472.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 459

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 164/446 (36%), Gaps = 49/446 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
           S T  Q +++    +          I Q   GSGKT    + +   +     G QA+++ 
Sbjct: 26  SMTGIQAASLPLAFKGKD------LIAQAKTGSGKTAAFSLPLLDKLNPRDFGTQALVLC 79

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    I++  +  Q I V  + G      +  +LE      AHI++GT     
Sbjct: 80  PTRELATQVSGEIRRLARYRQNIKVVTLCGGQSIGPQIGSLEH----GAHIVVGTPGRIS 135

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
           D ++   L L  VD        + L++        ++  T     +TL+ ++    DI  
Sbjct: 136 DHLRKKTLNLTRVDTLVLDEADRMLEMGFVEDISSIIEQTPA-ARQTLLFSATYPDDIEA 194

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE---KKESNFRSVV 504
           ++ +   +    +V    N  D+ I++   V  +  +   +   +     +    F +  
Sbjct: 195 LSARFQKQPERISVETMHN--DQQIDQQFFVCQKSARLDGLVTLLNHFAPQTAVVFCNTK 252

Query: 505 ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDAS 561
           +    +  H   S      +HG M   D++ V+  F+  +C +L+AT V   G+D+ D  
Sbjct: 253 QLVRDVTAHLDESGIRALALHGDMEQRDRDQVLIQFRQQSCSVLVATDVAARGLDIDDLP 312

Query: 562 IIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED----- 616
           +++           +H++ GR GR  +    + L+             +L+   +     
Sbjct: 313 VVVNFELPRETEVYVHRV-GRTGRAGKAGLALSLFADSEQYKLEKIRQLLQQEPETKPID 371

Query: 617 ---------------GFLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQP--ELHDSLLE 657
                             IA     + + G+ILG    ++G+    + +       + + 
Sbjct: 372 SISVRGERMPPPPYATLCIAGGRKHKVRPGDILGALTGEAGIAGSTVGKINVMDFAAYVA 431

Query: 658 IARKDAKHILTQDPDLTSVRGQSIRI 683
           +    A   L +  +   ++G+  ++
Sbjct: 432 VETSVADKALGRLLN-GKIKGRKFKV 456


>gi|168762636|ref|ZP_02787643.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4501]
 gi|189367023|gb|EDU85439.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4501]
          Length = 457

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 132/358 (36%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA      ++   +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADHVASELRPLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|114799942|ref|YP_759839.1| ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444]
 gi|114740116|gb|ABI78241.1| ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444]
          Length = 464

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 137/386 (35%), Gaps = 49/386 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
           +PT  QE AI  ++Q          +     G+GKTL     +   +          G +
Sbjct: 29  APTPIQEQAIPLVIQGRD------IVGLAQTGTGKTLAFAAPILDRLSRNASPAPVRGTR 82

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   LA Q       Y     + V ++ G      + + LER     AHI++ T 
Sbjct: 83  VLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLER----GAHILVATP 138

Query: 384 ALFQDSIQYY--------KLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPR 433
               D ++           LIL   D+    G     R       +    L  +AT    
Sbjct: 139 GRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQTLFFSATMPKA 198

Query: 434 TLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L +    + ++++  P       I+  +  + + ++    ++ +     ++  +  +
Sbjct: 199 VESLAATFLRNPAEVSVAPPATTAGRIEQRVCFVEQPEKASLLIEKIRDPELRSAIVFTR 258

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
            +   +            L +    S+AI HG  S   +E  +++FK G   +L+AT + 
Sbjct: 259 TKHGADG-------VVKRLAKADIDSVAI-HGNKSQSQREKALEAFKAGRVPILVATDIA 310

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GI V   + +I  +        +H++ GR  R       I       S++    L  +
Sbjct: 311 ARGIHVDALTHVINYDLPDVPEQFVHRI-GRTARAGNSGVAISFC----SRDERPTLRAI 365

Query: 612 KNTEDGFLIAEE-----DLKQRKEGE 632
           +    G  +A       D   RK G+
Sbjct: 366 EKLT-GLKLAPNGVSLPDEPLRKPGK 390


>gi|320325391|gb|EFW81456.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327468|gb|EFW83481.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330877269|gb|EGH11418.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 445

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 139/365 (38%), Gaps = 43/365 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA------AAVEAGGQAV 325
            PT  Q +AI   LQ    +      +    GSGKT   ++ +       A V    +AV
Sbjct: 22  EPTPVQAAAIPLALQGRDLR------VTAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAV 75

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + +++++Q T +   +ITG      +   L ++      I+IGT   
Sbjct: 76  ILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV----PDILIGTPGR 131

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPI---P 432
             + +    L L  V        D     G  + ++    + A     +L +AT      
Sbjct: 132 LLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGL 191

Query: 433 RTLVLTSLGDIDISKI---TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
           R ++   L D    ++   +E  +G +            ++V+    ++ +E  +   I 
Sbjct: 192 REMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNW--LLANETYQKAIIF 249

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                    N +++ +R             ++HG     D+++ +D  K G  K+++AT 
Sbjct: 250 T--------NTKAMADRLYGRLVALEYKAFVLHGDKYQKDRKAAIDRLKQGGAKIMVATD 301

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+DV    ++I  +    G   +H++ GR GR       I L          +   
Sbjct: 302 VAARGLDVEGLDMVINFDMPRSGDDYVHRV-GRTGRAGSDGLAISLICHGDWNLMSSVER 360

Query: 610 VLKNT 614
            LK +
Sbjct: 361 YLKQS 365


>gi|295104477|emb|CBL02021.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           SL3/3]
          Length = 641

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 131/348 (37%), Gaps = 38/348 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           +P+  Q +AI  +L           +     G+GKT    + M   + A         +A
Sbjct: 23  TPSPIQAAAIPPVLAGRD------LMGCAQTGTGKTAAFALPMLDRLTANAPRRKGAVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E  + Y +  ++   +I G + QA + +AL++       I+I    
Sbjct: 77  LILTPTRELALQIGESFEAYGKYLKLRSTVIFGGVGQAPQVEALKK----GVDILIACPG 132

Query: 385 LFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D I         L + ++DE  R      +   +K      ++       + L+ ++
Sbjct: 133 RLNDLIGQGFIDLSALEIFVLDEADRMLDMGFVHDVKK------VIAKLPAQRQNLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY---WIC-----PQ 491
               +I ++        P    + P++   + I++    + +G K     W+      P 
Sbjct: 187 TMPAEIEQLAA-GILHDPAFVKVDPVSSTVDRIQQSLYYVEKGNKKLLLPWLIKNLQPPV 245

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +     S  +   ++            A IHG  S   + + ++ FK+G  ++L+AT + 
Sbjct: 246 VNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALEDFKSGKTRVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             GID+ + S +   +        +H++ GR  R     + +    P 
Sbjct: 306 ARGIDISELSHVFNYDLPEVPETYVHRI-GRTARAGADGTAVSFCAPE 352


>gi|254563809|ref|YP_003070904.1| ATP-independent RNA helicase, DEAD/DEAH-box family protein
           [Methylobacterium extorquens DM4]
 gi|254271087|emb|CAX27094.1| putative ATP-independent RNA helicase, DEAD/DEAH-box family protein
           [Methylobacterium extorquens DM4]
          Length = 568

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 132/376 (35%), Gaps = 38/376 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
            PT  Q++ +  +            ++    GSGKT+   +A+A  +             
Sbjct: 21  EPTPVQQAVLDAV-------PERDLLVSAQTGSGKTVAFGLAIAGTLLGEDEALPPPGAP 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    +      T   +    G M      +ALE       HI++GT
Sbjct: 74  LALVIAPTRELALQVQRELTWLYAQTGARIVPCVGGMDPRREARALEA----GVHIVVGT 129

Query: 383 HALFQDSIQYYKLI--------LVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIP 432
               +D ++  +L+        L   DE    G ++ L+    +T      LL +AT   
Sbjct: 130 PGRLRDHMERGRLVTEGLRAVILDEADEMLDMGFREDLEFILASTPKDRRTLLFSATLPK 189

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
             + L      D  ++      R     V   +  +   +E   V +     A       
Sbjct: 190 AIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNILRYVDAPVAIVF- 248

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N R  V    +       S   + G +   ++ + + + ++G  ++ +AT V  
Sbjct: 249 -----CNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATDVAA 303

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+    ++I  +  H      H+  GR GR     + ++L  P   + +    ++ K
Sbjct: 304 RGIDLPGLDLVIHADLPHDAEVMQHR-SGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIAK 362

Query: 613 NTEDGFLIAEEDLKQR 628
            + D       D + R
Sbjct: 363 VSPDWSGPPNAD-EIR 377


>gi|134292614|ref|YP_001116350.1| ATP-dependent RNA helicase DbpA [Burkholderia vietnamiensis G4]
 gi|134135771|gb|ABO56885.1| ATP-dependent RNA helicase DbpA [Burkholderia vietnamiensis G4]
          Length = 465

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 76/450 (16%), Positives = 165/450 (36%), Gaps = 49/450 (10%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPI 330
           T  Q +++   L           I Q   GSGKT    +A+ + ++A     QA+I+ P 
Sbjct: 31  TPIQAASLPIALAGHD------LIAQAKTGSGKTAAFSLALLSRLDARRFDVQAMILCPT 84

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q  + +++  +    + V  + G  P   + ++LE      AH+++GT     D 
Sbjct: 85  RELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH----GAHVVVGTPGRIMDH 140

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           ++   L L  ++        + L +        V  M      +TL+ ++     I+K++
Sbjct: 141 LERGNLKLDALNTLVLDEADRMLDMGFFDDIVKVARMCPAT-RQTLLFSATYPDGIAKLS 199

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSV 503
           ++       K V +     D  I +    +++ ++ + +   +   +        N +  
Sbjct: 200 QQFLRNP--KEVKLAERHDDSKIRQRFYEVTDTERLHAVGQLLNHYRPVSTIAFCNTKQQ 257

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
                 +          +HG +   +++ V+  F N +C +L+AT V   G+D+     +
Sbjct: 258 CRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAV 317

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIA-- 621
           I  +        +H++ GR GR ++    + L                K   +   +A  
Sbjct: 318 INVDVTPDPEVHVHRI-GRTGRADQEGWALSLASMDEMGRVGAIEQAQKRDVEWHSLAEL 376

Query: 622 -----------EEDLKQRK-------EGEILG--IKQSGMPKFLIAQP--ELHDSLLEIA 659
                       E L+           G++LG     +G     I +       + + I 
Sbjct: 377 KPADEGTLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVTEFSTYVAIE 436

Query: 660 RKDAKHILTQDPDLTSVRGQSIRILLYLYQ 689
              A+  L +  +   ++G+ +++ L   +
Sbjct: 437 CGVARDALRKL-NAGKIKGKRVKVRLMDDE 465


>gi|224135589|ref|XP_002322111.1| predicted protein [Populus trichocarpa]
 gi|222869107|gb|EEF06238.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 137/397 (34%), Gaps = 47/397 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----------EA 320
            P+  Q +AI   LQ      +   I   + GSGKT   ++ M   +             
Sbjct: 312 KPSPIQMAAIPLGLQ------QRDVIGIAETGSGKTCAFVLPMLTYISRLPPMSEENEAE 365

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  AV+MAP   LAQQ  +   K+     I V  I G      +   + +       ++I
Sbjct: 366 GPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCE----VVI 421

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVL-------- 424
            T     D ++           ++L   D     G + ++     A     L        
Sbjct: 422 ATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEE 481

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           L        T + ++     + ++  K   R P+   I    +  ++I +  ++  E +K
Sbjct: 482 LDEKKIYRTTYMFSATMPPAVERLARKYL-RNPVVVTIGTAGKATDLISQHVIMTKESEK 540

Query: 485 AYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           +  +   ++E  +       N +   +      +     +  +HG  S   +E  ++ F+
Sbjct: 541 SSRLHRLLDELGDKTAIVFVNTKKNADMVAKNLDKHGYRVTTLHGGKSQEQREISLEGFR 600

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                +L+AT V   GID+ D + +I  +         H++ GR GR  +          
Sbjct: 601 TKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRI-GRTGRAGKTGVASTFLTL 659

Query: 599 PLSKNSYTRLSVLKNTEDGF--LIAEEDLKQRKEGEI 633
             +   Y    +L  +       +A  +  + K G I
Sbjct: 660 GDTDVFYDLKQMLIQSNSSVPPELARHEASKFKPGTI 696


>gi|39996017|ref|NP_951968.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|39982782|gb|AAR34241.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
          Length = 447

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 70/368 (19%), Positives = 135/368 (36%), Gaps = 41/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----GQAVIM 327
           +PT  Q  AI  ++        ++ + Q   G+GKT    + +   ++ G     +A+++
Sbjct: 23  TPTPIQAQAIPAVMAG----RDVMGLAQ--TGTGKTAAFALPILHRLQQGERGRVRALVI 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA+Q  +      + T++    + G +    + + L+      A +++       
Sbjct: 77  APTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKA----GAEVVVACPGRLL 132

Query: 388 DSI--------QYYKLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTL 435
           D I        +   L+L   D+    G     R  L         LL +AT     RTL
Sbjct: 133 DHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQTLLFSATMPIDIRTL 192

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L D    ++         +   + P+ +  +    L+++     ++  I  +    
Sbjct: 193 AQDILVDPVTVQVGTVAPAVT-VAHALYPVEQHLKTPLLLELLRHTDTESVLIFTRT--- 248

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   +R     E      A + G +S   +++ +D F++GT ++L+AT +   GI
Sbjct: 249 -----KHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGI 303

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL---- 611
           DV   S +I  +      A +H++ GR GR         L               L    
Sbjct: 304 DVSQVSHVINYDIPDTAEAYIHRI-GRTGRAARSGDAFTLVTSDDGAMVRAIERSLGAPI 362

Query: 612 -KNTEDGF 618
            + T  GF
Sbjct: 363 ERRTVQGF 370


>gi|95928808|ref|ZP_01311554.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95135153|gb|EAT16806.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 426

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 58/355 (16%), Positives = 114/355 (32%), Gaps = 27/355 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q  AI  +L           +     G+GKT    + +   +            +
Sbjct: 24  EPTPIQAQAIPAVLNG------GDILAAAQTGTGKTAGFTLPVLQRLSDTPVSSGRRPVR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA Q    +  Y +   +   I+ G +    +   L +       I++ T 
Sbjct: 78  ALVLTPTRELAAQVGASVADYGKYLPLRSAIVFGGVKINPQISMLRK----GVDILVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D +    + L  V E        R+           +L       + L+ ++    
Sbjct: 134 GRLLDHVSQKTVDLSKV-EILILDEADRMLDMGFIRDIRKVLALLPKKRQNLLFSATFSD 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---- 499
           DI ++ +      P    +   N   E +E+   ++ + +K   +   I  +        
Sbjct: 193 DIKRLADSLLN-TPTLIEVARRNTASEQVEQSVHLIEKSRKRELLSHMIGSQNWQQVLVF 251

Query: 500 --FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +    R     E        IHG  +   +   +  FK G  ++L+AT +   G+D+
Sbjct: 252 TRTKRGANRLAQQLEKDGLKSTAIHGNKTQGARTKALADFKAGRARVLVATDIAARGLDI 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
                ++           +H++ GR GR       + L      K       +LK
Sbjct: 312 DQLPNVVNYELPDVPEDYVHRI-GRTGRAGRDGKAVSLVCSEEKKQLRDIERLLK 365


>gi|260596208|ref|YP_003208779.1| ATP-dependent RNA helicase DeaD [Cronobacter turicensis z3032]
 gi|260215385|emb|CBA27415.1| Cold-shock DEAD box protein A [Cronobacter turicensis z3032]
          Length = 638

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 148/412 (35%), Gaps = 44/412 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 21  LNDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLHNIDDTLRA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 75  PQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGG----QRYDVQLRALRQGPQIVV 130

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++           L+L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATM 190

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + +    +I      R  I      +  + +    ++ + SE   A  I
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFLESEDFDAAII 250

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +LIAT
Sbjct: 251 FVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDILIAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 609 SVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             +K T     I E +L   +   +  +         +   +  + + +LL 
Sbjct: 362 RTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLA 408


>gi|123325507|gb|ABM74410.1| vasa protein [Botrylloides violaceus]
          Length = 630

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 139/373 (37%), Gaps = 48/373 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ +I  +  D         +     GSGKT   L+ + A +             
Sbjct: 222 KPTPVQKYSIPIVNGDRD------LMACAQTGSGKTAAFLLPVLAGIFRNGLKSVDSFSG 275

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
           +   QA+I+ P   L  Q +   +K+ ++T I   +  G      +   L R  +    I
Sbjct: 276 KQTPQAIIVGPTRELVYQIFIEARKFARSTMIKPVVAYGGTSVRSQLSDLSRGCN----I 331

Query: 379 IIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKL------TQKATAPHVL 424
           +I T     D I   K        LIL   D     G +  ++              H L
Sbjct: 332 LIATPGRLLDFITKGKVSCECVEYLILDEADRMLDMGFEPEIRRLVAAPGMPDKNTRHTL 391

Query: 425 LMTAT-PIPRTLVLTSLGDIDISKITEKPAG--RKPIKTVIIPINRIDEVIERLKVVLSE 481
           + +AT P     +       D   +T +  G     +   ++ I++ D+  + ++++   
Sbjct: 392 MFSATFPDEIQKLAHEFLREDFLFLTVRRVGGACSDVTQSMVQIDQDDKRDKLMELLADV 451

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            + A      ++ K+ ++F +       L          IHG     ++E+ +  FKNG 
Sbjct: 452 AETAARTLVFVDTKRNADFLATFLSQEGL------PTTSIHGDRQQRERETALLDFKNGR 505

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY-HPPL 600
           C +LIAT+V   G+D+     +I  +        +H++ GR GR   + S    Y     
Sbjct: 506 CPILIATSVAARGLDIPKVEHVINYDLPSDIDEYVHRI-GRTGRCGNLGSATSFYSDDKD 564

Query: 601 SKNSYTRLSVLKN 613
           +  + + + VL +
Sbjct: 565 NALARSLVKVLAD 577


>gi|224088162|ref|XP_002308349.1| predicted protein [Populus trichocarpa]
 gi|222854325|gb|EEE91872.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 135/375 (36%), Gaps = 45/375 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q +AI  +L           +     GSGKT      + A +          GG+
Sbjct: 74  KPTPVQRNAIPILLAGRD------LMACAQTGSGKTAAFCFPIIAGIMREQYVQRPHGGR 127

Query: 324 -----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                A+I++P   L+ Q ++  KK+   T + V ++ G  P   + + LER       +
Sbjct: 128 TVYPLALILSPTRELSCQIHDEAKKFAYQTGVKVVVVYGGAPVNQQLRELER----GVDV 183

Query: 379 IIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++ T     D ++  ++ L ++     DE  R          Q       + M      +
Sbjct: 184 LVATPGRLVDLVERARVSLQMIRYLALDEADRMLDMGFEP--QIRKIVEQMDMPPCGRRQ 241

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           T++ ++    +I ++         I   +  +    ++I +    + E  K   +   + 
Sbjct: 242 TMLFSATFPKEIQRLASDFL-SNYIFLAVGRVGSSTDLIVQRVEYVHETDKRSHLMDLLH 300

Query: 494 EKKESN-------------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            ++E+               +   +               IHG  S  ++E  + SFK+G
Sbjct: 301 AQRETEVNGKHSLTLVFVETKKGADSLEHWLYVNKFPATSIHGDRSQQEREMALRSFKSG 360

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   G+D+   + ++  +  +     +H++ GR GR  +       ++   
Sbjct: 361 KTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI-GRTGRAGKTGLATAFFNENN 419

Query: 601 SKNSYTRLSVLKNTE 615
              +     +++   
Sbjct: 420 LSLARPLADLMQEAN 434


>gi|257466549|ref|ZP_05630860.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917704|ref|ZP_07913944.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691579|gb|EFS28414.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 528

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 125/342 (36%), Gaps = 34/342 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAP 329
           +PT  Q   I  +L           I Q   G+GKT    + +   +E     Q +++ P
Sbjct: 30  TPTPIQSLTIPALLTGEK-----DIIGQAQTGTGKTAAFALPILENIEHQDKIQGIVLTP 84

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +     + +I +  + G      +RK L       A II+GT     D 
Sbjct: 85  TRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQRKLLRN----GADIIVGTPGRVIDF 140

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTL--VL 437
           I+   L        IL   DE    G  + ++   +AT     +L  +AT     L    
Sbjct: 141 IERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNEDKRMLFFSATMPNEILKVAK 200

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIEEKK 496
             + D +I  +  +         +   +N  D+     +++ L+E       C    +  
Sbjct: 201 KHMKDYEILAVKARELTTDLTDQIYFEVNERDKFEALCRIIDLAEDFYGIVFCRTKTDVN 260

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           E   R     +++           +HG +    +E  +  FK     +L+AT V   GID
Sbjct: 261 EVVGRLNDRGYDA---------EGLHGDIGQNYREVTLKRFKAKKINILVATDVAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           V D S +I         + +H++ GR GR  +  + I    P
Sbjct: 312 VNDLSHVINYAIPQEAESYVHRI-GRTGRAGKEGTAITFITP 352


>gi|94400887|ref|NP_001035345.1| ATP-dependent RNA helicase vasa [Apis mellifera]
 gi|83701804|gb|ABC41341.1| vasa protein [Apis mellifera]
          Length = 630

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 129/372 (34%), Gaps = 42/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
            PT  Q+ A+  I   M+ ++ M        GSGKT    + +   +             
Sbjct: 218 KPTPVQKHALPII---MNGRDLM---ACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTY 271

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              Q VI++P   L  Q ++ I K++ N+ +   +  G     H+R  L        HI+
Sbjct: 272 CEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKL----SAGCHIL 327

Query: 380 IGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
           + T     D ++     +  +  +++DE  R      L   +K        M      +T
Sbjct: 328 VATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHET--MVPLGERQT 385

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    ++  +  +         V I      +V E+    ++  KK   +   +E 
Sbjct: 386 LMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDV-EQNFYEVARNKKKDLLKEILER 444

Query: 495 KKE----------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           + +             +   +               IHG      +E  +  FK+G   +
Sbjct: 445 ENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSI 504

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           L+AT V   G+D+ + S +I  +        +H++ GR GR          + P      
Sbjct: 505 LVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRI-GRTGRVGNRGRATSFFDPEEDAPL 563

Query: 605 Y-TRLSVLKNTE 615
               + +LK   
Sbjct: 564 RGDLVRILKQAN 575


>gi|330999267|ref|ZP_08322984.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
 gi|329575125|gb|EGG56676.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
          Length = 423

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 126/374 (33%), Gaps = 39/374 (10%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
              +K++    F+ PT  Q  AI  + Q          +     G+GKT   ++ M   +
Sbjct: 12  PQLEKLIEVNGFTSPTPIQMKAIPLVRQGYD------LLAAAQTGTGKTAAFVLPMLQKI 65

Query: 319 EAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                       + +++ P   LA Q  E I    ++  +   ++ G +    ++ A+ +
Sbjct: 66  IEEPTLYQKRVPRVLVLTPTRELAAQVGETILSLGKDLGVRSAVVFGGVGINPQKAAIAK 125

Query: 371 IAHGQAHIIIGTHALFQDSIQ--YYKLILVIV---DEQHRFGVQQRLKLTQKATAPHVLL 425
                   ++ T     D +   +  L    +   DE  R      L   +       +L
Sbjct: 126 ----GLDFLVATPGRLLDLMNQGFADLSKTHILILDEADRMLDMGFLPDLK------RIL 175

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
               P  +TL+ ++    +I K+  +   +   ++V I  N+   ++ +    + +  K 
Sbjct: 176 KALPPDRQTLLFSATFSPEIKKLASEFLNKP--ESVEIERNKDSSLVRQTLYRVPKADKH 233

Query: 486 YWICPQIEEKKESNFRSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKN 539
             +   I + +              + L  H          IHG  S   + + +  FK 
Sbjct: 234 TVLRDLIVDNQWDQVLVFTRTKYGADKLVRHLLKDGLVAKAIHGDKSQNARTTALREFKE 293

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+AT +   G+D+     ++           +H++ GR GR  E      L  P 
Sbjct: 294 HKLPILVATDIAARGLDIEKLPQVVNYELPQQAEDYVHRI-GRTGRAGEAGEAYSLVSPE 352

Query: 600 LSKNSYTRLSVLKN 613
                      +K 
Sbjct: 353 ELPQFAAIEKFIKK 366


>gi|329912990|ref|ZP_08275858.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545464|gb|EGF30669.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 410

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 129/356 (36%), Gaps = 38/356 (10%)

Query: 260 KIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
              Q+ L  + + +PT  Q  AI  +L           +     G+GKT    + +   +
Sbjct: 10  DQLQRNLDTLGYSTPTPVQAQAIPAVLAGRD------LMAAAQTGTGKTAGFALPLLQRL 63

Query: 319 -EAGGQA-------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
              G Q        +++ P   LA+Q ++   +Y  +  +   +  G +    +   L +
Sbjct: 64  TMEGPQVSSNCVRVLVLVPTRELAEQVHQAFGEYGASLPLRTHVAYGGVSINPQMMKLRK 123

Query: 371 IAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL 425
                  +++ T     D     ++++ +L  +++DE  R      L L        V  
Sbjct: 124 ----GLDVLVATPGRLLDLYRQNAVKFEQLQTLVLDEADRM-----LDLGFSRELDEV-- 172

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
             A P  R  +L S    D  +         P++  I P N   + I++  + + + +K 
Sbjct: 173 FAALPKKRQTLLFSATFSDEIRALSTTLLDNPVRIEISPRNTPVKTIKQWAIPVDKKRKP 232

Query: 486 YWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
                 +++ +          R  V+    +          IHG      +   ++ FK+
Sbjct: 233 ELFLHLLKKHRWGQVLVFVKTRRGVDELVDILLAQGIRADAIHGDKPQPARLRALEGFKS 292

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
              ++L+AT V   G+D+ D   ++  +        +H++ GR GR       + L
Sbjct: 293 RDVQILVATDVAARGLDIDDLPQVVNFDLPIVAEDYIHRI-GRTGRAGASGMAVSL 347


>gi|320033151|gb|EFW15100.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Coccidioides
           posadasii str. Silveira]
          Length = 820

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 135/388 (34%), Gaps = 55/388 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------------ 319
            P+  Q +AI   LQ+         I     GSGKT   L+ +   +             
Sbjct: 402 DPSPIQRAAIPIALQNRD------LIGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEWRK 455

Query: 320 -AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G  A+I+AP   LAQQ     +K+       V  I G      +  +L       A I
Sbjct: 456 SDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSLEEQSFSLRN----GAEI 511

Query: 379 IIGTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLT--------------- 415
           II T     D I+   L+L           D     G ++ +                  
Sbjct: 512 IIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDTEE 571

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            + A A    L       +T++ T+     + +I  K   R  I T+      +D V +R
Sbjct: 572 AEDARAMSQHLGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAVDTVEQR 631

Query: 475 LKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           ++ +  E K+   +   +   +         N +   +      +    S   +HG  + 
Sbjct: 632 VEFISGEDKRKKRLADILASGEFRPPIIVFVNIKRNCDAVARDIKQMGYSSVTLHGSKTQ 691

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +E+ + S +NG   +L+AT +   GIDV D S+++  N      +  H++ GR GR  
Sbjct: 692 EQREAALASVRNGNTDVLVATDLAGRGIDVSDVSLVVNFNMATNIESYTHRI-GRTGRAG 750

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +    I       +   Y    +L  + 
Sbjct: 751 KSGVAITFLGNEDADVMYDLKQMLMKSS 778


>gi|271499180|ref|YP_003332205.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270342735|gb|ACZ75500.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 624

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 75/409 (18%), Positives = 151/409 (36%), Gaps = 40/409 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + +  P+  Q   I  +L           +     GSGKT    + +   ++A    
Sbjct: 21  LSEMGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLNNIKADLKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E   +++++   + V  + G      R     R       +++
Sbjct: 75  PQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGG----QRYDVQLRALRQGPQVVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTALFSATM 190

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + D    +I      R  I      +  + +    ++ + +E   A  I
Sbjct: 191 PEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFLEAEDFDAAII 250

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +LIAT
Sbjct: 251 FVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDILIAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 303 DVAARGLDVDRISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIE 361

Query: 609 SVLKNTEDGFLIAEEDLK-QRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
            ++K T     +   +L  QR+  +     Q    +   +  +++ +LL
Sbjct: 362 RIMKLTIPEVELPNAELLGQRRLAKFAAKVQ---QQLESSDLDMYRALL 407


>gi|255722942|ref|XP_002546405.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
 gi|240130922|gb|EER30484.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
          Length = 483

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 136/368 (36%), Gaps = 38/368 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMA 328
            PT  Q  +I   L+          I     GSGKT    I +  ++    Q    +++A
Sbjct: 90  KPTPIQSESIPHALEGKD------IIGLAQTGSGKTAAFAIPILQSLWHAQQPYFGLVLA 143

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E       +  +    I G M    + + L R    + HII+ T     D
Sbjct: 144 PTRELAFQIKETFDALGSSMGLRSSCIVGGMDMMDQARDLMR----KPHIIVATPGRIMD 199

Query: 389 SIQY------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            +++        L  +++DE  R           K       ++   P  RT  L S   
Sbjct: 200 HLEHTKGFTLKNLKYLVMDEADRLLDMDFGPALDK-------ILKVIPTKRTTYLFSATM 252

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES---- 498
            +  +  ++ +   P++  +    +  + + +  +++++G K   +   + E        
Sbjct: 253 TNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMSKSIIV 312

Query: 499 --NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                +  +R   L      +   +HG++S   +   ++ FK+ T  +LIAT V   G+D
Sbjct: 313 FTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNTANILIATDVAARGLD 372

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +    ++I  +      A +H++ GR  R       I L      +      SVL     
Sbjct: 373 IPSVDVVINYDIPTDSKAYIHRV-GRTARAGRSGKSISLITQYDLEMYLRIESVL----- 426

Query: 617 GFLIAEED 624
           G+ + +ED
Sbjct: 427 GYKLPKED 434


>gi|86142428|ref|ZP_01060938.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis
           MED217]
 gi|85831180|gb|EAQ49637.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis
           MED217]
          Length = 442

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 135/366 (36%), Gaps = 48/366 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------GGQ--- 323
           PT  Q  AI  +L+          +     G+GKT    I +   +        G +   
Sbjct: 24  PTPIQRQAIPILLKGKD------LLGSAQTGTGKTAAFTIPILQQIYDKVGSGKGKRKLK 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  + +K+Y++ T I   +I G + QA + +A+ +       ++  T 
Sbjct: 78  ALIVTPTRELAIQIEDNVKEYSKYTGIQSTVIFGGVKQASQVQAMRK----GVDVLTATP 133

Query: 384 ALFQDSIQYY--------KLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPR 433
               D ++           L+L   D+    G    +   L         L  +AT    
Sbjct: 134 GRLLDLVKQGFIDLGTIEYLVLDEADQMLDMGFIHDIKKILKLVPHKRQSLFFSATMPKE 193

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            + L+ L   D  K++            I P     E +++    +S+  KA  +   I+
Sbjct: 194 IIDLSKLILGDFEKVS------------IAPEKPTAERVDQAVYFVSKKNKAKLLKHLID 241

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            +K          +    +   + +      A IHG  S   ++  +++FK G   +L+A
Sbjct: 242 TEKPETLLVFSRTKHGANKIVKVLDKAGIQAAAIHGNKSQAARQKALNAFKEGKLHVLVA 301

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   GIDV +  ++I  +  +     +H++ GR GR +     I              
Sbjct: 302 TDIAARGIDVSELELVIQYDLPNVPETYVHRI-GRTGRAKASGIAISFCATDERAYLKDI 360

Query: 608 LSVLKN 613
             ++K 
Sbjct: 361 EKLIKQ 366


>gi|237743040|ref|ZP_04573521.1| ATP-dependent RNA helicase [Fusobacterium sp. 7_1]
 gi|229433600|gb|EEO43812.1| ATP-dependent RNA helicase [Fusobacterium sp. 7_1]
          Length = 528

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 68/342 (19%), Positives = 127/342 (37%), Gaps = 34/342 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAP 329
           SPT  Q   I  +L     KN    I Q   G+GKT    + +    E     QA+++ P
Sbjct: 30  SPTPIQRLTIPALL-----KNDKDIIGQAQTGTGKTAAFSLPIIENFENLEHIQAIVLTP 84

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +   + + ++ V  + G      +RK ++        +++GT     D 
Sbjct: 85  TRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKT----GVDVVVGTPGRVIDL 140

Query: 390 IQYYKLILVIV--------DEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRTL--VL 437
           I+   L L  +        DE    G  + +   LT       +L  +AT     +    
Sbjct: 141 IERKLLKLNSLKYFILDEADEMLNMGFIEDIEKILTFTNEDKRMLFFSATMPDEIMKVAK 200

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIEEKK 496
             + + ++  +  +       + +   +N  D+     +++ L++       C    +  
Sbjct: 201 NHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGIIFCRTKTDVN 260

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           E   R     +++           +HG +    +E  +  FK     +L+AT V   GID
Sbjct: 261 EIVGRLNDRGYDA---------EGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           + D S +I         + +H++ GR GR  +  + I    P
Sbjct: 312 INDLSHVINYAIPQEVESYVHRI-GRTGRAGKEGTAITFITP 352


>gi|306813632|ref|ZP_07447813.1| ATP-dependent RNA helicase DbpA [Escherichia coli NC101]
 gi|222033147|emb|CAP75887.1| ATP-independent RNA helicase dbpA [Escherichia coli LF82]
 gi|305852906|gb|EFM53351.1| ATP-dependent RNA helicase DbpA [Escherichia coli NC101]
 gi|312945979|gb|ADR26806.1| ATP-dependent RNA helicase DbpA [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 457

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 133/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++     
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDVSLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  ++        + L +        V+   A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICF-APASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGHSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|301025571|ref|ZP_07189094.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|300395891|gb|EFJ79429.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
          Length = 457

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LDELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGLQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|320195643|gb|EFW70268.1| ATP-dependent RNA helicase DbpA [Escherichia coli WV_060327]
          Length = 457

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 135/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +  +   +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|262377334|ref|ZP_06070558.1| II DNA/RNA helicase [Acinetobacter lwoffii SH145]
 gi|262307787|gb|EEY88926.1| II DNA/RNA helicase [Acinetobacter lwoffii SH145]
          Length = 624

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 73/387 (18%), Positives = 135/387 (34%), Gaps = 52/387 (13%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   + L  + F+ PT  QE AI   L+          ++    GSGKT   L+    A
Sbjct: 11  DESLTQALDALGFTTPTPVQEQAIPAALEGKD------LLVSSQTGSGKTAAFLLPTLNA 64

Query: 318 VEAG---------------GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQ 361
           +                     ++++P   LAQQ  +    + ++   + +  I G MP 
Sbjct: 65  LANQDTLVPFKDRMKAVTQPNILVISPTRELAQQVCQDAIAFVRHMKGVRIAAIMGGMPF 124

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK 413
             + + L+      A +++ T     D +   +        LI+   D     G  + L+
Sbjct: 125 GKQIQQLK-----GAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLE 179

Query: 414 LTQK--ATAPHVLLMTATPIPR--TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
              +  A     L+ +AT  PR  TL    + D     I    +    I   +   +  +
Sbjct: 180 AIGELAANRKQTLMFSATFAPRIITLAERMMNDPMRISIETGHSTNTDITQTLHWTDGFE 239

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
              + L   L+E      +         ++ +   +           S+  +HG M    
Sbjct: 240 HKKKLLTHWLNEEDVDQAVVF-------ASTQEDTDMLAEELAEAGLSVVALHGAMPQTV 292

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +   + S + G  K+L+AT V   G+DV   S +I           +H++ GR GR    
Sbjct: 293 RNRRLRSIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRI-GRTGRAGRT 351

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTED 616
              I L     +     ++  L++  D
Sbjct: 352 GKAITL----ATYRERGKIRALEDFLD 374


>gi|212550405|ref|YP_002308722.1| ATP-dependent RNA helicase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548643|dbj|BAG83311.1| putative ATP-dependent RNA helicase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 548

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 74/360 (20%), Positives = 135/360 (37%), Gaps = 42/360 (11%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIG 331
             QE  I  +L    + N ++ +   + G+GKT    + +   ++      QAV++ P  
Sbjct: 27  PIQEKVIPYLL---GKGNEVIAL--AETGTGKTAAFGLPILQQIQIHHEHPQAVVLCPTR 81

Query: 332 ILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
            L  Q    I  Y++  + + +  I G      + KAL     G  HI++ T     D I
Sbjct: 82  ELCLQIANDINNYSKYLKKLKILPIYGGSNIESQIKALR----GGVHIVVATSGRLIDLI 137

Query: 391 QY--------YKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
           +           ++L   DE    G  +     L       ++LL +AT           
Sbjct: 138 KRGAVDLQYVRNVVLDEADEMLSVGFSESIDEILRHIPEDRNMLLFSAT----------- 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI------CPQIEE 494
             ++IS IT+K   R P + VI   N     +  +  ++S   + + +       P I  
Sbjct: 187 MPLEISWITKKYM-RNPHEIVIGKKNSGGRTVRHVYYMVSVSDRYFLLKRLVDYHPNIYG 245

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 ++  +   +       ++  +HG +S   ++ +M  F+    +LL+AT V   G
Sbjct: 246 IVFCRTKNETQEIANFLIRDGYNVDALHGDLSQSQRDYIMQKFRLHNIQLLVATDVASRG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S II         + +H+  GR GR  +  + I + H             +  T
Sbjct: 306 LDVDGLSHIINYGLPSDIESYIHR-SGRTGRAGKTGTSIAIIHLKEKFKIRAIERCINKT 364


>gi|326923424|ref|XP_003207936.1| PREDICTED: hypothetical protein LOC100542017, partial [Meleagris
            gallopavo]
          Length = 1461

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 140/401 (34%), Gaps = 60/401 (14%)

Query: 295  LRILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYT 345
              I Q   G+GKT    I +   ++A  Q          +++AP   LA Q  +  K  T
Sbjct: 909  DVIAQAQTGTGKTFSFAIPLIEKLQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDIT 968

Query: 346  QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR 405
            +  ++ V    G  P   +   +         I++GT    +D +Q  KL L  V     
Sbjct: 969  R--KLTVACFYGGTPYNGQIDLIRS----GIDILVGTPGRIKDHLQNGKLDLTKVKHVVL 1022

Query: 406  FGVQQRLKLTQKATAPHVLLMT----ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
              V Q L +        +L +     +   P+TL+ ++     +  + +K    K  +  
Sbjct: 1023 DEVDQMLDMGFAEQVEDILRVAYKKDSEDNPQTLLFSATCPNWVYDVAKKYMKSKYEQVD 1082

Query: 462  II--PINRIDEVIERLKVVLSEGKKAYWICPQIE-----EKKESNFRSVVERFNSLH--E 512
            +I     +    +E L +     ++A  I   I+       +   F    +  N L    
Sbjct: 1083 LIGRRTQKAATTVEHLAIECHWSQRAAVIGDVIQVYSGSHGRTIVFCETKKDANELALNA 1142

Query: 513  HFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG 572
                    +HG +    +E  +  F+NG  K+L+AT V   G+D+ +  +++  +     
Sbjct: 1143 SIKQDCQSLHGDIPQKQREITLKGFRNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDV 1202

Query: 573  LAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGE 632
             + +H+  GR GR      CI  Y                              QRKE  
Sbjct: 1203 ESYIHR-SGRTGRAGRTGICICFY------------------------------QRKEEN 1231

Query: 633  -ILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPD 672
             +  ++Q     F          +++ + KDA   L   P 
Sbjct: 1232 QLRYVEQKAGITFKRVGVPTATDIIKASSKDAIRCLDSVPQ 1272


>gi|189205174|ref|XP_001938922.1| ATP-dependent RNA helicase dbp2 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187986021|gb|EDU51509.1| ATP-dependent RNA helicase dbp2 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 573

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 74/390 (18%), Positives = 137/390 (35%), Gaps = 65/390 (16%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L           +   + GSGKTL   +     + A        G  
Sbjct: 151 KPTAIQAQGWPMALSGRDV------VGVAETGSGKTLTYCLPAIVHINAQPLLAPGDGPI 204

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA Q  + I K+ ++++I    + G +P+  + + L R       + I T 
Sbjct: 205 VLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDLAR----GVEVCIATP 260

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D ++  K        L+L   D     G   Q R  + Q        + +AT    
Sbjct: 261 GRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMWSATWPKE 320

Query: 434 TLVLTSLGDIDISKI----TEKPAGR--KPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
              L +    D  ++     +  A    + I  V     + D + + L+ ++S+      
Sbjct: 321 VRQLAADYQKDWIQVNIGSMDLSANHRIQQIVEVCTEFEKRDRMAKHLETIMSDKDNKIL 380

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           I            R   E    L +    +++I HG     +++ V++ FK G   +++A
Sbjct: 381 IFT-------GTKRVADEITRFLRQDGWPALSI-HGDKQQNERDWVLNEFKTGKSPIMVA 432

Query: 548 TTVIEVGI----------------------DVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           T V   GI                      DV + + +   +  +     +H++ GR GR
Sbjct: 433 TDVASRGIASRDPIMIAVCSFHQSLTFALQDVRNITHVFNYDYPNNSEDYVHRI-GRTGR 491

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
                + I L+    SK +   + +L  ++
Sbjct: 492 AGANGTAITLFTTENSKQARDLVQILTESK 521


>gi|120435454|ref|YP_861140.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Gramella
           forsetii KT0803]
 gi|117577604|emb|CAL66073.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Gramella
           forsetii KT0803]
          Length = 597

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 146/368 (39%), Gaps = 41/368 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           + ++ F  P++ QE +I  +L+          +     G+GKT      +   ++A    
Sbjct: 17  IEDMGFETPSEVQEKSIPILLE-----KETDLVSLAQTGTGKTAAFGFPLIQKIDANSKK 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+I++P   L  Q    IK Y++  + + V  + G      + +++ER     A II+
Sbjct: 72  TQALILSPTRELCLQITNEIKNYSKYKKSLNVVAVYGGASITDQARSIER----GAQIIV 127

Query: 381 GTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI- 431
            T    QD I+            +L   DE    G  + +K           +++ TP  
Sbjct: 128 ATPGRMQDMIRRRLANISSIGYCVLDEADEMLNMGFYEDIK----------TILSHTPKE 177

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI--- 488
            +T + ++    +++KI +K     PI+  +   N+    +     +++   +   +   
Sbjct: 178 KKTWLFSATMPKEVAKIAKKFMT-DPIEITVGSKNKGTSNVSHEYYLVNHRNRYDALKRL 236

Query: 489 ---CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
               P+I        +   ++          + A +HG +S   ++ VM SF++   ++L
Sbjct: 237 ADANPEIFSVIFCRTKRDTQKVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRSRQIQML 296

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   GIDV D + +I            H+  GR GR  +    +++      +   
Sbjct: 297 VATDVAARGIDVDDITHVINYQLPDEIETYTHR-SGRTGRAGKQGVSMVIISKSEVRKIR 355

Query: 606 TRLSVLKN 613
           T   +++ 
Sbjct: 356 TVEKIIQQ 363


>gi|113971144|ref|YP_734937.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885828|gb|ABI39880.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 433

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 59/371 (15%), Positives = 129/371 (34%), Gaps = 32/371 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA--------AVEAGGQAV 325
           T  Q+ AI  I +          +     G+GKT    + +           +++  + +
Sbjct: 25  TPIQQQAIPAIRRGQDV------LASAQTGTGKTAAFALPILQKMAENPSETLKSNARVL 78

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  + ++ Y++     V  I G +    + + L+R     A II+ T   
Sbjct: 79  ILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQKLKR----GADIIVATPGR 134

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             + +    L L  +D         R+           +L       + L+ ++     +
Sbjct: 135 LLEHLTACNLSLSSID-FLVLDEADRMLDMGFNADIQKILQAVNKKRQNLLFSATFSSAV 193

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRS 502
            K+       KP        N   + + ++   + + +K   +   I +K       F +
Sbjct: 194 KKLAN-EMMVKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIGKKNWQQVLVFTA 252

Query: 503 VVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             +  ++L +          ++HG  +   +   +  F +G  ++L+AT V   G+D+  
Sbjct: 253 TRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFMSGKVRVLVATEVAARGLDIPS 312

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN-----T 614
              ++  +        +H++ GR GR  +    I        +       ++       T
Sbjct: 313 LEYVVNFDLPFLAEDYVHRI-GRTGRAGKSGVAISFVSREEERTLADIEKLIGQKIRRIT 371

Query: 615 EDGFLIAEEDL 625
             G+ +   DL
Sbjct: 372 VPGYEVGSRDL 382


>gi|329898744|ref|ZP_08272452.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088]
 gi|328920765|gb|EGG28222.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088]
          Length = 412

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 129/374 (34%), Gaps = 42/374 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------V 325
           +PT  Q +AI  +LQ          +     G+GKT    + +   +     +      +
Sbjct: 23  TPTAIQSAAIGPVLQGKD------LMASAQTGTGKTAAFTLPLLETLLRKPNSSKSPKFL 76

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q     + Y++        + G +    + + L++       ++I T   
Sbjct: 77  IITPTRELAAQIEASAQTYSKYISCRTLAVFGGVKIGPQIRQLKQ----GVDVLIATPGR 132

Query: 386 FQD-----SIQYYKLILVIVDEQHRFGVQ-----QRLKLTQKATAPHVLLMTAT--PIPR 433
             D      +    + ++++DE  R          R            L+ +AT     R
Sbjct: 133 LLDLSEQGEVDLKMIDVLVLDEADRMLDMGFIPAIRRIQKLLPATKQTLMFSATYSDEIR 192

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL  T L       +T K A    +  +I P+++  +      ++ + G     +  +  
Sbjct: 193 TLAQTYLRRPVEVSVTPKNAAAHTVDQLIYPVDKKQKSAVLQYLLNNYGWVQVLVFSRT- 251

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    +     +      A IHG  S   +   +  FK+G   +L+AT +   
Sbjct: 252 -------KHGANKLVRELDKANIRAAAIHGNRSQSQRTKALADFKSGKIAVLVATDIASR 304

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL-- 611
           GID+    ++I  +  +     +H++ GR GR       I L      K       V+  
Sbjct: 305 GIDIAQLPVVINFDLPNVPEDYVHRI-GRTGRAGSNGRAISLVCADEVKQLRDIERVISR 363

Query: 612 ---KNTEDGFLIAE 622
              +   DGF   E
Sbjct: 364 QLPREFIDGFAPQE 377


>gi|302765659|ref|XP_002966250.1| hypothetical protein SELMODRAFT_85554 [Selaginella moellendorffii]
 gi|302801131|ref|XP_002982322.1| hypothetical protein SELMODRAFT_116103 [Selaginella moellendorffii]
 gi|300149914|gb|EFJ16567.1| hypothetical protein SELMODRAFT_116103 [Selaginella moellendorffii]
 gi|300165670|gb|EFJ32277.1| hypothetical protein SELMODRAFT_85554 [Selaginella moellendorffii]
          Length = 411

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 68/341 (19%), Positives = 126/341 (36%), Gaps = 37/341 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 60  KPSTIQQRGIVPFCKGIDV------IQQAQSGTGKTATFCSGILQQLDYNNVECQALVLA 113

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++      Q+ V    G       ++ L+       H+++GT     D
Sbjct: 114 PTRELAQQIEKVMRALGDYLQVKVHACVGGTDVRQDQRILQA----GVHVVVGTPGRVYD 169

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V L +AT  P  L +T
Sbjct: 170 MLRRRALRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGLFSATMPPEALEIT 229

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIE--RLKVVLSEGKKAYWICPQIEE 494
                   +I  K      + IK   + + R D  ++            ++   C     
Sbjct: 230 RKFMNKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFCNT--- 286

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  G
Sbjct: 287 ------RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 340

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           IDV   S++I  +        LH++ GR GR       I  
Sbjct: 341 IDVQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINF 380


>gi|294651664|ref|ZP_06728967.1| ATP-dependent RNA helicase [Acinetobacter haemolyticus ATCC 19194]
 gi|292822443|gb|EFF81343.1| ATP-dependent RNA helicase [Acinetobacter haemolyticus ATCC 19194]
          Length = 647

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 130/381 (34%), Gaps = 40/381 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  Q+ L  + F+ PT  QE AI   L+          ++    GSGKT   L+    A
Sbjct: 11  HETLQQALEGLGFTTPTPVQEQAIPAALEGKD------LLVSSQTGSGKTAAFLLPTLNA 64

Query: 318 VE---------------AGGQAVIMAPIGILAQQH-YEFIKKYTQNTQIIVEIITGNMPQ 361
           +                     ++++P   LAQQ   + I        + +  I G MP 
Sbjct: 65  LAGQETFVPFKERMKAVTQPTILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPF 124

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             + + L+      A +++ T     D +   +L L  V E        R+     A   
Sbjct: 125 GKQIQQLK-----GAQVVVATPGRLLDLVNRRQLKLDKV-ESLIVDEADRMLDLGFAEDL 178

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             +   A    +TL+ ++     I ++ E+         +    +   +V + L      
Sbjct: 179 EAIGELAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDGF 238

Query: 482 GKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             K   +   + ++           +   +           S+  +HG M    +   + 
Sbjct: 239 EHKKKLLTHWLSDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLR 298

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           S + G  K+L+AT V   G+DV   S +I           +H++ GR GR       + L
Sbjct: 299 SIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRI-GRTGRAGRTGQAVTL 357

Query: 596 YHPPLSKNSYTRLSVLKNTED 616
                +     ++  L++  D
Sbjct: 358 ----ATYRERGKIRALEDYLD 374


>gi|26991217|ref|NP_746642.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986267|gb|AAN70106.1|AE016650_5 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 440

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 139/366 (37%), Gaps = 42/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQ----AV 325
            PT  Q +AI   LQ    +      +    GSGKT   ++ +   +   +G +    A+
Sbjct: 22  EPTPVQAAAIPLALQGRDLR------VTAQTGSGKTAAFVLPLLNRLVDLSGPRVEIRAL 75

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + ++ ++Q T I   ++TG      +   L ++      ++IGT   
Sbjct: 76  ILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRKV----PDVLIGTPGR 131

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATP---IP 432
             + +    L L  V        D     G  + ++    +       LL +AT      
Sbjct: 132 LLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGGAAL 191

Query: 433 RTLVLTSLGDIDISKITEKP--AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
           R ++   L D +   +      A     + +    ++  E I +  +      KA     
Sbjct: 192 RDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLANETFDKAIIFTN 251

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     R++ +R             ++HG     D++  ++ FK G+ K+L+AT V
Sbjct: 252 T---------RAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDV 302

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRLS 609
              G+D+    ++I  +    G   +H++ GR GR G E  +  L+ H   +  S     
Sbjct: 303 AARGLDIDGLDLVINFDMPRSGDEYVHRV-GRTGRAGGEGLAISLITHNDWNLMSSIERY 361

Query: 610 VLKNTE 615
           + +  E
Sbjct: 362 LKQQFE 367


>gi|2500516|sp|Q40470|IF4A7_TOBAC RecName: Full=Eukaryotic initiation factor 4A-7; Short=eIF-4A-7;
           AltName: Full=ATP-dependent RNA helicase eIF4A-7
 gi|485949|emb|CAA55738.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 128/343 (37%), Gaps = 39/343 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS----GVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            ++   L        +L   DE    G + ++                 P  +  V ++ 
Sbjct: 172 MLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDI---------FQLLPPKIQVGVFSAT 222

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS-EGKKAYWICPQIEEKK--- 496
              +  +IT K    KP++ ++   +   E I++  V +  E  K   +C   E      
Sbjct: 223 MPPEALEITRKFMN-KPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQ 281

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  
Sbjct: 282 SVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR 341

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           GIDV   S++I  +        LH++ GR GR       I   
Sbjct: 342 GIDVQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFV 383


>gi|320637247|gb|EFX07073.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           G5101]
          Length = 457

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 130/358 (36%), Gaps = 36/358 (10%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIM 327
            + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A     QA+++
Sbjct: 24  LTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77

Query: 328 APIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P   LA Q    +++  +      +  + G  P   +R +L+       HII+ T    
Sbjct: 78  CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIVATPGRL 133

Query: 387 QDSIQ--------YYKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPRTLV 436
            D +Q           L++   D     G        +     +   LL +AT       
Sbjct: 134 LDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAA 193

Query: 437 LTSLGDIDISKITEKPAGR-KPIKTVIIPINRIDEV-IERLKVVLSEGKKAYWICPQIEE 494
           ++     D   I         PI+      +   ++ + +  + L +       C     
Sbjct: 194 ISGRVQRDPLAIEIDSTDALPPIEQQFCETSSKGKIPLLQRLLSLHQPSSCVVFCNT--- 250

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             + + ++V +  N + +    S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 251 --KKDCQAVCDALNEVGQ----SALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|307545041|ref|YP_003897520.1| ATP-dependent RNA helicase RhlE [Halomonas elongata DSM 2581]
 gi|307217065|emb|CBV42335.1| ATP-dependent RNA helicase RhlE [Halomonas elongata DSM 2581]
          Length = 433

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 132/372 (35%), Gaps = 43/372 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
            PT  Q  AI  +L+          +     G+GKT    + M   +  G +       A
Sbjct: 23  EPTPIQRQAIPAVLEG------GDLLASAQTGTGKTAGFTLPMLQRLADGKRPAKRGVRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E ++ Y ++  +   +I G + Q  +  A+         I++ T  
Sbjct: 77  LVLTPTRELAAQVGESVRDYGRHLSLTSHVIFGGVGQQPQVDAIRP----GLDILVATPG 132

Query: 385 LFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT--PIP 432
              D  Q           L+L   D     G     R  L         LL +AT     
Sbjct: 133 RLLDLQQQGHVDLSGVETLVLDEADRMLDMGFIHDIRKVLKLLPAKRQNLLFSATFSNEI 192

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL    L    + ++  +    + ++  +  ++R  +    L   L + ++ + +    
Sbjct: 193 QTLANQLLDRPTLIEVARRNTTAETVEQAVYRVDREKK--RDLLAHLIQSQRWFQVLVFT 250

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
             K  +N      R              IHG  S   +   + +FK+G  ++L+AT +  
Sbjct: 251 RTKHGAN------RLAEHLGKRDIPAMAIHGNKSQSARTKALSAFKSGDLQVLVATDIAA 304

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-----LSKNSYTR 607
            G+D+ +   ++     +     +H++ GR GR       + L          +     +
Sbjct: 305 RGLDIDELPHVVNFELPNVAEDYVHRI-GRTGRAGNEGQAVSLVCVDEHGLLKNIEKLIK 363

Query: 608 LSVLKNTEDGFL 619
             ++K+ E GF 
Sbjct: 364 RDLVKHIEPGFE 375


>gi|326789718|ref|YP_004307539.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326540482|gb|ADZ82341.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 592

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 125/348 (35%), Gaps = 40/348 (11%)

Query: 267 RNIPFSPT-KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGG 322
            ++ F  T   Q  AI  ILQ          I Q   G+GKT    I    +V+      
Sbjct: 22  HDMGFEETTPIQGKAIPIILQG------NDIIAQAPTGTGKTCAFGIPAIESVDTTNEKV 75

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q +I+ P   L  Q  E +    +    I    I G      +  AL++    +  II+G
Sbjct: 76  QVLILCPTRELVIQTTEELSALAKYKRGIRTLPIYGGQQIDRQIIALKK----RPQIIVG 131

Query: 382 THALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T     D ++   L L  +        DE    G ++ +          V+L +     +
Sbjct: 132 TPGRIMDHLRRGTLKLEHLKMIILDEADEMLNMGFREDI---------DVILESVPEERQ 182

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            ++ ++     I  I  K     PI   ++        +++  + + +  K   +   I+
Sbjct: 183 FVLFSATLAKAILDIANKYQN-NPITVNVVHKELTVPTVKQYYLEVRDSNKVEVLSRLID 241

Query: 494 EKKES---NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                    F +   R + L     +       +HG M  + +++VM  F+NG   +LIA
Sbjct: 242 ANNFKLSVVFCNTKRRVDDLCRDLQARGYSAESLHGDMKQLQRDNVMSRFRNGLIDILIA 301

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           T V   GIDV D   +   +        +H++ GR GR +        
Sbjct: 302 TDVAARGIDVDDVDAVFNYDVPSDEEYYVHRI-GRTGRAQREGVSYTF 348


>gi|257482171|ref|ZP_05636212.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 442

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 131/351 (37%), Gaps = 38/351 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + +PT  Q  AI  +L           +     G+GKT    + +   +   G  
Sbjct: 16  LEALGYQTPTPVQTQAIPPVLAGRD------LMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+++AP   LA Q +E I++Y ++  +      G +    +   L +      
Sbjct: 70  VAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRK----GV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +++ T     D     ++++ +L  +I+DE  R        L          +    P 
Sbjct: 126 DVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRM-------LDLGFAEELRGIYAVLPK 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  ++        P+   + P N     +++  V + + +KA      
Sbjct: 179 QRQTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHL 238

Query: 492 IEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +++ +          R  V++     +    +   IHG      ++  +D FK+   K+L
Sbjct: 239 MKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKIL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +AT V   G+D+ D   ++  +        +H++ GR GR       I L 
Sbjct: 299 VATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGLTGEAISLV 348


>gi|257452688|ref|ZP_05617987.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R]
 gi|317059228|ref|ZP_07923713.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R]
 gi|313684904|gb|EFS21739.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R]
          Length = 528

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 125/342 (36%), Gaps = 34/342 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAP 329
           +PT  Q   I  +L           I Q   G+GKT    + +   +E     Q +++ P
Sbjct: 30  TPTPIQSLTIPALLTGEK-----DIIGQAQTGTGKTAAFALPILENIEHQDKIQGIVLTP 84

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +     + +I +  + G      +RK L       A II+GT     D 
Sbjct: 85  TRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQRKLLRN----GADIIVGTPGRVIDF 140

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTL--VL 437
           I+   L        IL   DE    G  + ++   +AT     +L  +AT     L    
Sbjct: 141 IERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNEDKRMLFFSATMPSEILKVAK 200

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIEEKK 496
             + D +I  +  +         +   +N  D+     +++ L+E       C    +  
Sbjct: 201 KHMKDYEILAVKARELTTDLTDQIYFEVNERDKFEALCRIIDLAEDFYGIVFCRTKTDVN 260

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           E   R     +++           +HG +    +E  +  FK     +L+AT V   GID
Sbjct: 261 EVVGRLNDRGYDA---------EGLHGDIGQNYREVTLKRFKAKKINILVATDVAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           V D S +I         + +H++ GR GR  +  + I    P
Sbjct: 312 VNDLSHVINYAIPQEAESYVHRI-GRTGRAGKEGTAITFITP 352


>gi|229593097|ref|YP_002875216.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
 gi|229364963|emb|CAY53082.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 628

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 134/378 (35%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  EPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGHPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q ++  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSQDITALAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G+ ++L+A
Sbjct: 246 AGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSVRILVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|309266557|ref|XP_003086787.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Mus
           musculus]
 gi|309269288|ref|XP_003084847.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like isoform 2
           [Mus musculus]
 gi|148694445|gb|EDL26392.1| mCG15236 [Mus musculus]
          Length = 620

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 130/363 (35%), Gaps = 37/363 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQA 324
            PT  Q  A   +LQ +        I     G+GKTL  L+     ++        G   
Sbjct: 238 KPTPIQSQAWPIVLQGID------LIGVAQTGTGKTLSYLMPGFIHLDSQPLEQRNGPGM 291

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q      KY+      V +  G      R   ++ ++ G   III T  
Sbjct: 292 LVLTPTRELALQVEAECSKYSYGDLKSVCVYGGG----DRDGQIQDVSKG-VDIIIATPG 346

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      +    +  +++DE  +           K      +L+   P  +T++ ++
Sbjct: 347 RLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMK------ILLDVRPDRQTIMTSA 400

Query: 440 LGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
                + ++ +       I  V    ++ ++ + + I              ++     + 
Sbjct: 401 TWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIITTEEEKRTHIQTFLENMSPKD 460

Query: 496 KESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           K   F S     + L         S+  +HG     D+E  +++FK G  ++LIAT +  
Sbjct: 461 KVIVFVSRKAVADHLSSDLILRHISVESLHGNREQSDREKALENFKTGKVRILIATDLAS 520

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV D + +   +        +H++ GR GR       I L      + +   +++L+
Sbjct: 521 RGLDVHDITHVYNYDFPRNIEEYVHRV-GRTGRAGRTGMSITLITRNDWRVATELINILE 579

Query: 613 NTE 615
              
Sbjct: 580 RAN 582


>gi|258622745|ref|ZP_05717763.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|258584933|gb|EEW09664.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
          Length = 460

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 132/365 (36%), Gaps = 40/365 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + F + T  Q  ++  IL           I QG  GSGKT    + + + +      
Sbjct: 19  LETMGFATMTPIQAQSLPAILNGQDV------IGQGKTGSGKTAAFGLGVLSNLNVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 73  VQALVLCPTRELADQVATDIRTLGRIIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 128

Query: 381 GTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATP 430
           GT     D +        +   L+L   D     G Q+ L+       T    LL +AT 
Sbjct: 129 GTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLLFSATY 188

Query: 431 I--PRTLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +  +   +  + K+  T   +  +     +      DE +E   ++  +   + 
Sbjct: 189 PASIEQIAQSVTRNAMMIKVAATHDTSSIRQYFYKVDGSAARDEALEA-LLLHHQPTSSV 247

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C           R V    ++LH+   S I + HG M   +++  +  F N +  +L+
Sbjct: 248 VFCNT--------KREVQNVADALHQSGFSVIEL-HGDMEQRERDQALVQFANKSISILV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV +   +   +        +H++ GR GR          +    S     
Sbjct: 299 ATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRI-GRTGRAGSKGLAFSFFSDNESYRVAQ 357

Query: 607 RLSVL 611
               +
Sbjct: 358 IDEYM 362


>gi|227886220|ref|ZP_04004025.1| ATP-dependent RNA helicase DbpA [Escherichia coli 83972]
 gi|227836424|gb|EEJ46890.1| ATP-dependent RNA helicase DbpA [Escherichia coli 83972]
 gi|307553405|gb|ADN46180.1| ATP-independent RNA helicase DbpA [Escherichia coli ABU 83972]
          Length = 457

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 135/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +  +   +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|226943654|ref|YP_002798727.1| DEAD box family ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
 gi|226718581|gb|ACO77752.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Azotobacter
           vinelandii DJ]
          Length = 558

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 142/373 (38%), Gaps = 46/373 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q  AI  IL           I Q   G+GKT    + M + ++      Q +I+A
Sbjct: 28  EPSPIQAQAIPVILAGHD------MIGQAQTGTGKTAAFALPMLSRIDPARREPQLLILA 81

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNM-PQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q     + Y      +  +      P   + KAL +     A I++ T     
Sbjct: 82  PTRELALQVATAFETYASQLPGVGVVAVYGGAPMGPQLKALRQ----GAQILVATPGRLC 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI-PRTLVLT 438
           D ++           L+L   DE  + G  + L+          ++  A P   +T++ +
Sbjct: 138 DHLRRDEQLLSTVKHLVLDEADEMLKLGFMEDLE----------VIFAALPESRQTVLFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +     I +I EK    +P    I    +    I++  +++   +K   +   +E ++  
Sbjct: 188 ATLPHSIREIAEKHL-HEPQHVKIAAKTQTVARIDQAHLMVHADQKTAAVLRLLEVEEFD 246

Query: 499 NFRSVVER------FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
              + V             E      A ++G ++   +E V++S K+G   +++AT V  
Sbjct: 247 ALIAFVRTKQATLDLAGALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GIDV   + +   +  +   + +H++ GR GR       +LL  P         L V++
Sbjct: 307 RGIDVPRITHVFNVDMPYDPESYVHRI-GRTGRAGRDGRALLLVTPRE----RRMLQVIE 361

Query: 613 NTEDGFLIAEEDL 625
               G  +AE  L
Sbjct: 362 RVT-GQKVAEVHL 373


>gi|156602934|ref|XP_001618742.1| hypothetical protein NEMVEDRAFT_v1g224852 [Nematostella vectensis]
 gi|156200154|gb|EDO26642.1| predicted protein [Nematostella vectensis]
          Length = 343

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 74/207 (35%), Positives = 113/207 (54%), Gaps = 6/207 (2%)

Query: 246 QFKKEIGIPINVEGKIAQKILR-NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGS 304
           +  K  G P  + G         ++PF  T +Q+  IK+I  D+    +M R+LQGDVGS
Sbjct: 10  RKHKIKGHPFEIIGDNFTNFYNNHLPFELTNAQKRVIKEIRNDLGSHAQMNRLLQGDVGS 69

Query: 305 GKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
           GKT+VAL+ M  A +   Q+ +MAP  ILA QH+  I +  ++  I + ++TG+   A R
Sbjct: 70  GKTIVALLCMLIAKDNDFQSCLMAPTEILATQHFNGISELAKDLDIKIVLLTGSTKTAAR 129

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
           RK  E + +G+  I+IGTHAL +D +++  L   I+DEQHRFGV+QR KL +K     + 
Sbjct: 130 RKIHEALENGELDILIGTHALLEDKVKFRNLGFAIIDEQHRFGVEQRSKLWKKDAMDILY 189

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEK 451
               T            D D +++  +
Sbjct: 190 SGKVTGF-----CLVSSDSDFTRLATR 211


>gi|186473980|ref|YP_001861322.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184196312|gb|ACC74276.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 481

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 66/376 (17%), Positives = 131/376 (34%), Gaps = 43/376 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
           +PT  Q  AI  +L           +     G+GKT    + +   +   G        +
Sbjct: 23  TPTPVQVKAIPAVLGGKDV------MAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRVR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++ P   LA+Q  +    Y +   +      G +    +   L +       +++ T 
Sbjct: 77  VLVLVPTRELAEQVLQSFVVYGKGLDLRFLAAYGGVSINPQMMKLRK----GVDVLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++Q+ ++  +++DE  R        L          +  A P  R  +L 
Sbjct: 133 GRLLDLNRQNAVQFDQVQTLVLDEADRM-------LDLGFARELNAVFAALPAQRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  +       R P+   + P N     I +  V + +  K       + E    
Sbjct: 186 SATFSDDIRAMAANFLRGPVHISVSPPNATASKIRQWVVPVDKRNKPDLFMHLVAENNWD 245

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           +       R+ V+   ++ +    ++  IHG      +   ++ FK G   +L+AT V  
Sbjct: 246 HALVFVKTRTGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKAGQVHMLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+    ++I  +        +H++ GR GR       + L     +       ++++
Sbjct: 306 RGLDIDHLPLVINVDLPIVAQDYVHRI-GRTGRAGASGVAVSLVCADEAPQLAAIEALIR 364

Query: 613 NT-----EDGFLIAEE 623
            T     E GF  AE 
Sbjct: 365 QTLPREEEPGFE-AEH 379


>gi|73965239|ref|XP_861886.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 14 [Canis
           familiaris]
          Length = 588

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 85/440 (19%), Positives = 146/440 (33%), Gaps = 89/440 (20%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIP- 270
           P+  K+F    P   R    E+           ++ K+      N    +      N P 
Sbjct: 52  PKFEKNFYQEHPDLARRTAQEVETY--------RRSKEITVRGHNCPKPVLNFYEANFPA 103

Query: 271 -----------FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319
                        PT  Q       L  +     M+ + Q   GSGKTL  L+     + 
Sbjct: 104 NVMDVIARQNFTEPTAIQAQGWPVALSGLD----MVGVAQ--TGSGKTLSYLLPAIVHIN 157

Query: 320 --------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                    G   +++AP   LAQQ  +   +Y                           
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC-------------------------- 191

Query: 372 AHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAP 421
                 I I T     D ++  K        L+L   D     G + +++    Q     
Sbjct: 192 ----VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 247

Query: 422 HVLLMTATPIP--RTLVLTSLGDIDISKI--TEKPAGRK--PIKTVIIPINRIDEVIERL 475
             L+ +AT     R L    L D     I   E  A      I  V   + + +++I  +
Sbjct: 248 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 307

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
           + ++SE +    +  + +       R   E    +      ++ I HG  S  +++ V++
Sbjct: 308 EEIMSEKENKTIVFVETK-------RRCDELTRKMRRDGWPAMGI-HGDKSQQERDWVLN 359

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK+G   +LIAT V   G+DV D   +I  +  +     +H++ GR  R  +  +    
Sbjct: 360 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTF 418

Query: 596 YHPPLSKNSYTRLSVLKNTE 615
           + P   K     +SVL+   
Sbjct: 419 FTPNNIKQVSDLISVLREAN 438


>gi|325192175|emb|CCA26630.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 627

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 134/374 (35%), Gaps = 49/374 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ +I   L           +     GSGKT   L    AA+             
Sbjct: 172 KPTPVQKYSIPIGLAGRD------MMACAQTGSGKTGGFLFPTLAAMLREGAKPVDGAGS 225

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
              ++   A+I+AP   LA Q Y+  KK+   T +   ++ G      + + LER     
Sbjct: 226 SQRKSHPAALILAPTRELASQIYDEAKKFCYCTGVAPVVLYGGAEVGRQVRELER----G 281

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT----QKATAPHV 423
             +++ T     D ++  +        LIL   D     G + +++              
Sbjct: 282 CDLLVATPGRLVDLMERGRVSLSGIRFLILDEADRMLDMGFEPQIRRLVEQEDMPRERQT 341

Query: 424 LLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
            + +AT     + L    L D     +    +  K +K  I  I   D+  E   V    
Sbjct: 342 FMFSATFPREMQRLAADFLQDYIFLTVGRVGSASKDVKQQIEFIEPHDK--EDYLVRFLN 399

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
             +   I   +E K+ +++         L          IHG  +  ++E+ ++SF++G 
Sbjct: 400 QVQEGLILVFVETKRGADY------LEQLLCREGFPATSIHGDRTQREREAALNSFRSGR 453

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   G+D+   + +I  +  +     +H++ GR GR   +   + +      
Sbjct: 454 TPVLVATDVAARGLDINGVTHVINFDLPNNIDDYVHRI-GRTGRAGNLGHALSMMTDKNR 512

Query: 602 KNSYTRLSVLKNTE 615
             S    ++L    
Sbjct: 513 NISRELYALLVENS 526


>gi|315230959|ref|YP_004071395.1| cold-shock DEAD-box protein A [Thermococcus barophilus MP]
 gi|315183987|gb|ADT84172.1| cold-shock DEAD-box protein A [Thermococcus barophilus MP]
          Length = 389

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 75/341 (21%), Positives = 115/341 (33%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT  Q   I   L+          + Q   G+GKT    + +   +   E   QA+I+ 
Sbjct: 30  EPTDIQREVIPLFLRG-----DADIVGQSQTGTGKTASFALPLVDVINEYEREVQAIILT 84

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + IK      +I V  + G  P   + +AL +     AHI++GT     D
Sbjct: 85  PTRELALQVADEIKSLRGKKRIKVLSVYGGQPIGPQIRALRK----GAHIVVGTPGRVLD 140

Query: 389 SIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            I+   L L  +        D     G     R    +      VL+ +AT     L L 
Sbjct: 141 HIRRGTLRLDGIQYFILDEADRMLDMGFIDDIRAIFRETPRDKRVLMFSATMPREVLKLA 200

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRI-DEVIERLKVVLSEGKKAYWICPQIEEKKE 497
                +   I        P       I  +    I  L+ +L+        C        
Sbjct: 201 KRYMKEYELIRTSSDEPVPNLVEQEYIEVVPARKISVLERILNSEFYGIVFC-------- 252

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              +               S   ++G MS   +E  +  FK     +L+AT V   GIDV
Sbjct: 253 -QTKRETRILAEKLARIGYSAEALNGDMSQKSRERALMRFKRRKINILVATDVAARGIDV 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            D + I+  +        +H++ GR GR  +    I    P
Sbjct: 312 QDITHIVNYSLPQNAEMYIHRI-GRTGRAGKKGKAITFIMP 351


>gi|302686080|ref|XP_003032720.1| hypothetical protein SCHCODRAFT_67353 [Schizophyllum commune H4-8]
 gi|300106414|gb|EFI97817.1| hypothetical protein SCHCODRAFT_67353 [Schizophyllum commune H4-8]
          Length = 652

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 59/386 (15%), Positives = 132/386 (34%), Gaps = 59/386 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA-------------V 318
           +PT  Q+ +I  +       N    +     GSGKT   L  + +A              
Sbjct: 185 TPTPVQKYSIPIV------ANNRDLMACAQTGSGKTGGFLFPILSASFAAGPAPTPDQGA 238

Query: 319 EAGGQ------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
             G Q      A+++AP   L  Q +E  +K+   + +   ++ G      + + LER  
Sbjct: 239 SYGRQRKAYPTALVLAPTRELVSQIHEEARKFAYRSWVRPCVVYGGADIGQQLRTLER-- 296

Query: 373 HGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
                ++  T     D I+  +        L+L   D     G + +++   +      +
Sbjct: 297 --GCDLLSATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEPQIRRIVQGEDMPGV 354

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                   +TL+ ++    DI ++  K   +  I   +  +    E I +    + +  K
Sbjct: 355 H-----ERQTLMFSATFPRDI-QLLAKDFLKDYIFLSVGRVGSTSENITQKIEFVEDPDK 408

Query: 485 AYWICPQIEEKKES---------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
              +   +   +                   + + +               IHG  +  +
Sbjct: 409 RSVLLDILSANQAPAANGGNGMGLTLVFVETKRMADGLCDFLLSHRMPATSIHGDRTQRE 468

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E  +++F++G   +L+AT V   G+D+ + + ++  +        +H++ GR GR    
Sbjct: 469 REMALNTFRSGRTPILVATAVAARGLDIPNVTHVVNYDLPGDIDDYVHRI-GRTGRAGNT 527

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTE 615
                 ++          + +L+   
Sbjct: 528 GVSTAFFNRSNRNIVRELVELLREAN 553


>gi|260947802|ref|XP_002618198.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720]
 gi|238848070|gb|EEQ37534.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720]
          Length = 692

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 61/373 (16%), Positives = 128/373 (34%), Gaps = 43/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA-AVEAGG-------- 322
            PT  Q+ ++  +       N+   +     GSGKT   L  + +    +G         
Sbjct: 246 KPTPVQKYSVPIVC------NKRDLMACAQTGSGKTGGFLFPVLSECFMSGPAPQPEPTG 299

Query: 323 ---------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                      +IMAP   L  Q +E  KKY   + +   +  G +    + + L+R   
Sbjct: 300 AFSFNKVYPTILIMAPTRELVSQIFEEAKKYCYRSWVRPAVAYGGVDIGQQIRTLQR--- 356

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++       D ++  ++ L  V     DE  R          Q         M  
Sbjct: 357 -GCDLLVAAPGRLTDLLERGRVSLCNVKYLVLDEADRMLDMGFEP--QIRHIVQECDMPD 413

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++    +I  +  +   +  +   +  +      I +  +++ + +K   I
Sbjct: 414 VQDRQTLMFSATFPRNIQMLA-RDFLKDYVFLSVGRVGSTSANITQKVLLVEDDEKRSVI 472

Query: 489 CPQIE------EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +           +  + + +               IHG  +  ++E  + +FKNGT 
Sbjct: 473 LDLLSAADNGLTIVFTETKRMADYLADFLYDQGFPATAIHGNRTQYEREKALAAFKNGTA 532

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ + S +I  +        +H++ GR GR          ++     
Sbjct: 533 PILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRI-GRTGRAGNTGIATSFFNRNNKN 591

Query: 603 NSYTRLSVLKNTE 615
                +++L    
Sbjct: 592 IVKDMIALLSEAN 604


>gi|163842399|ref|YP_001626803.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella suis ATCC 23445]
 gi|163673122|gb|ABY37233.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella suis ATCC 23445]
          Length = 626

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 142/350 (40%), Gaps = 46/350 (13%)

Query: 272 SPTKSQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGG 322
           + T  Q + +  + L           ++    GSGKT+   +AMA  +        +AG 
Sbjct: 22  TLTAVQNAVLAPETLAS-------DLLVSAQTGSGKTVAFGLAMANTILEDELRFGDAGA 74

Query: 323 Q-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LA Q    ++    +T   +    G M     R+ALER     +HI++G
Sbjct: 75  PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GSHIVVG 130

Query: 382 THALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D I        Q   ++L   DE    G ++ L+           L  A    R
Sbjct: 131 TPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFI---------LGEAPEDRR 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I+++ ++        TV    ++  + I+ + + +   ++ + I   + 
Sbjct: 182 TLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHAD-IDYVAMPVPPHERDHAIINTLL 240

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                N       R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           T V   GID+ +  ++I  +        LH+  GR GR     +C+L+  
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNSDTLLHR-SGRTGRAGRKGTCVLVVP 349


>gi|26247679|ref|NP_753719.1| ATP-dependent RNA helicase DbpA [Escherichia coli CFT073]
 gi|26108081|gb|AAN80281.1|AE016760_140 ATP-independent RNA helicase dbpA [Escherichia coli CFT073]
          Length = 457

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 135/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +  +   +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|74318833|ref|YP_316573.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74058328|gb|AAZ98768.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 533

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 113/342 (33%), Gaps = 38/342 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQAVI 326
           T  Q+ AI   L           ++    GSGKT   L+     + A       G + ++
Sbjct: 25  TPVQQQAIPAALSG------GDLLVSSHTGSGKTAAFLLPSIQRLLAEPAVKSIGPRVLV 78

Query: 327 MAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           + P   LA Q     +    +  +     + G  P   + K L +       +++ T   
Sbjct: 79  LTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQLKRLSQP----VDVVVATPGR 134

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQ--KATAPHVLLMTATPIPR-- 433
             D ++  K        L+L   D     G    +K            LL +AT      
Sbjct: 135 LIDHLERGKIDFSRLEVLVLDEADRMLDMGFVDDIKAIAARCPAERQTLLFSATLDGVVG 194

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L      D    +I   P     I+  ++  + +D     L  +L + +    I     
Sbjct: 195 NLARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDHKNRLLDALLRDVEMVQAIVF--- 251

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               ++ +   E  + L      +   +HG M    +   +   + G  ++L+AT V   
Sbjct: 252 ----ASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTRVLVATDVAAR 307

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           GIDV   S +I  +        +H++ GR GR       +  
Sbjct: 308 GIDVASISHVINFDLPRQAEDYVHRI-GRTGRAGRTGIAVSF 348


>gi|1170506|sp|P41379|IF4A2_NICPL RecName: Full=Eukaryotic initiation factor 4A-2; Short=eIF-4A-2;
           AltName: Full=ATP-dependent RNA helicase eIF4A-2
 gi|19697|emb|CAA43513.1| nicotiana eukaryotic translation initiation factor 4A [Nicotiana
           plumbaginifolia]
          Length = 413

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 126/337 (37%), Gaps = 33/337 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS----GVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 172 MLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ +  +E L          Y      +   
Sbjct: 232 RKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           V   S++I  +        LH++ GR GR       I
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAI 380


>gi|330873518|gb|EGH07667.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330967687|gb|EGH67947.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 442

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 66/351 (18%), Positives = 132/351 (37%), Gaps = 38/351 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + +PT  Q  AI  +L           +     G+GKT    + +   +   G  
Sbjct: 16  LEALGYQTPTPVQTQAIPPVLAGRD------LMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+++AP   LA Q +E I++Y ++  +      G +    +   L +      
Sbjct: 70  VAPNSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRK----GV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +++ T     D     +I++ +L  +I+DE  R        L          +    P 
Sbjct: 126 DVLVATPGRLLDLYRQKAIKFSQLQTLILDEADRM-------LDLGFAEELRGIYAVLPK 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  ++        P+   + P N     +++  V + + +KA      
Sbjct: 179 QRQTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHL 238

Query: 492 IEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +++ +          R  V++     +    +   IHG      ++  +D FK+   K+L
Sbjct: 239 MKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKIL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +AT V   G+D+ D   ++  +        +H++ GR GR  +    I L 
Sbjct: 299 VATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGQTGEAISLV 348


>gi|226953843|ref|ZP_03824307.1| ATP-dependent RNA helicase [Acinetobacter sp. ATCC 27244]
 gi|226835434|gb|EEH67817.1| ATP-dependent RNA helicase [Acinetobacter sp. ATCC 27244]
          Length = 647

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 130/381 (34%), Gaps = 40/381 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  Q+ L  + F+ PT  QE AI   L+          ++    GSGKT   L+    A
Sbjct: 11  HETLQQALEGLGFTTPTPVQEQAIPAALEGKD------LLVSSQTGSGKTAAFLLPTLNA 64

Query: 318 VE---------------AGGQAVIMAPIGILAQQH-YEFIKKYTQNTQIIVEIITGNMPQ 361
           +                     ++++P   LAQQ   + I        + +  I G MP 
Sbjct: 65  LAGQETFVPFKERMKAVTQPTILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPF 124

Query: 362 AHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
             + + L+      A +++ T     D +   +L L  V E        R+     A   
Sbjct: 125 GKQIQQLK-----GAQVVVATPGRLLDLVNRRQLKLDKV-ESLIVDEADRMLDLGFAEDL 178

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSE 481
             +   A    +TL+ ++     I ++ E+         +    +   +V + L      
Sbjct: 179 EAIGELAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDGF 238

Query: 482 GKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             K   +   + ++           +   +           S+  +HG M    +   + 
Sbjct: 239 EHKKKLLTHWLSDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLR 298

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           S + G  K+L+AT V   G+DV   S +I           +H++ GR GR       + L
Sbjct: 299 SIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRI-GRTGRAGRTGQAVTL 357

Query: 596 YHPPLSKNSYTRLSVLKNTED 616
                +     ++  L++  D
Sbjct: 358 ----ATYRERGKIRALEDYLD 374


>gi|66820759|ref|XP_643949.1| hypothetical protein DDB_G0274325 [Dictyostelium discoideum AX4]
 gi|74927179|sp|Q86IZ9|DDX52_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx52; AltName:
           Full=DEAD box protein 52
 gi|60472102|gb|EAL70055.1| hypothetical protein DDB_G0274325 [Dictyostelium discoideum AX4]
          Length = 668

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 143/371 (38%), Gaps = 25/371 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAGGQAVIM 327
            P+  Q   I  +L++         +     GSGKT    I +  A+    + G ++VI+
Sbjct: 221 EPSPIQMQVIPILLKEREV------VAIAPTGSGKTASFSIPILQALYEPKKEGFRSVII 274

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LAQQ Y   +  ++     + +++ N+      + L +       I+I T     
Sbjct: 275 APTRELAQQIYRNFRLLSKGKPFRICVLSKNLHNQSTNENLIKNY----DILITTPLRLV 330

Query: 388 DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLL-MTATPIPRTLVLTSLGDIDIS 446
             I+   L L  V E   F    +L          +++     P  +  + ++  +  + 
Sbjct: 331 YLIKENLLSLNKV-EYLVFDEADKLFDKNFQEQVDIVVTACQNPKLKICLFSATMNQQVE 389

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIE---EKKESNFRS 502
           ++      + PIK +I   N     +++  + +  E  K   +   I+   E     F  
Sbjct: 390 ELGHS-IMKNPIKIIIGEQNAAAITVDQKLIYVGKEEGKLLAVRQLIQKGLEPPILIFTQ 448

Query: 503 VVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             ER + L +       ++ +IH   +   +++++  F+ G   +LI T ++  G+D   
Sbjct: 449 SKERAHDLFQELIFDGINVDVIHSERTQFQRDTIVKKFRMGKIWVLICTELMARGMDFKG 508

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +I  +  H   + +H++ GR GR         LY    +    T +  +K +     
Sbjct: 509 VNFVINFDFPHTLASYIHRI-GRTGRAGRPGVAYTLYTDADTPMLPTIVHAMKQSGSHVP 567

Query: 620 IAEEDLKQRKE 630
               +LK + +
Sbjct: 568 DWMLNLKVQGK 578


>gi|257463152|ref|ZP_05627553.1| ATP-dependent RNA helicase [Fusobacterium sp. D12]
 gi|317060745|ref|ZP_07925230.1| ATP-dependent RNA helicase [Fusobacterium sp. D12]
 gi|313686421|gb|EFS23256.1| ATP-dependent RNA helicase [Fusobacterium sp. D12]
          Length = 528

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 92/441 (20%), Positives = 157/441 (35%), Gaps = 53/441 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAP 329
           +PT  Q   I  +L           I Q   G+GKT    + +   +E     Q +++ P
Sbjct: 30  TPTPIQSLTIPALLTGEK-----DIIGQAQTGTGKTAAFALPILENIEHQDKIQGIVLTP 84

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +     + +I +  + G      +RK L       A II+GT     D 
Sbjct: 85  TRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQRKLLRT----GADIIVGTPGRVIDF 140

Query: 390 IQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPH--VLLMTATPIPRTL--VL 437
           I+   L        IL   DE    G  + ++   +AT     +L  +AT     L    
Sbjct: 141 IERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNEDKRMLFFSATMPNEILKVAK 200

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIEEKK 496
             + D +I  +  +         +   +N  D+     +++ L+E       C    +  
Sbjct: 201 KHMKDYEILAVKARELTTDLTDQIYFEVNERDKFEALCRIIDLAEDFYGIVFCRTKTDVN 260

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           E   R     +++           +HG +    +E  +  FK     +L+AT V   GID
Sbjct: 261 EVVGRLNDRGYDA---------EGLHGDIGQNYREVTLKRFKARKINILVATDVAARGID 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V D S +I         + +H++ GR GR  +  + I    P   +       ++K    
Sbjct: 312 VNDLSHVINYAIPQEAESYVHRI-GRTGRAGKEGTAITFITPQEYRRLLQIQRIVKT--- 367

Query: 617 GFLIAEEDLKQRKEG--EILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQDPDLT 674
                    + RKE   E+  + Q+   KF I Q ++ + LLE      K +      L 
Sbjct: 368 ---------EIRKEQVPEVKDVIQA--KKFQI-QKDIDEILLEGEYDKFKKLAQDL--LK 413

Query: 675 SVRGQSIRILLYLYQYNEAFQ 695
               ++I   L    Y +   
Sbjct: 414 KEEAENIVASLLKLAYEDVLD 434


>gi|157962845|ref|YP_001502879.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847845|gb|ABV88344.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 414

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 129/370 (34%), Gaps = 30/370 (8%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
           G   Q++L    +  PT  Q  AI  IL           +     G+GKT    + +   
Sbjct: 11  GDKLQRVLAQKGYQQPTAIQAEAIPVILSGQD------IMASAQTGTGKTAAFTLPLLQR 64

Query: 318 VEAG----------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
           +               A+I+ P   LA Q    + +Y  NT I   +I G +    +   
Sbjct: 65  LLDRSAEDCLTSRLPTALILVPTRELAVQVNGNVSQYAVNTDIASVVIYGGVSIDAQATK 124

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           L         II+ T     D ++   L L  +D    F    R+           +L  
Sbjct: 125 LAA----GCDIIVATPGRLLDHLRRGSLNLSSID-YLVFDEADRMLDMGFMDEISAILTR 179

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
                +T + ++     I  +++K    KP +  +   N   + +E++   +   +K   
Sbjct: 180 LPAKRQTSLFSATFSTAIYDLSKK-LLHKPARIEVDKANSAADSVEQIVYAVDSDRKTEL 238

Query: 488 ICPQIEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
           IC  I++            +   +                HG +    +E V++ FK G 
Sbjct: 239 ICHLIKKYDWHQVLIFSRKKQTADTIAQKMLATGIETKAFHGDLGQGAREQVLNDFKQGK 298

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
            K L+AT V   G+D+V+   ++           +H++ GR GR   +   + LY    +
Sbjct: 299 IKALVATDVAARGLDIVELKYVVNYEIPFIAEDYIHRI-GRTGRAGSVGKAVTLYSEDDA 357

Query: 602 KNSYTRLSVL 611
                  +VL
Sbjct: 358 LLLEEVETVL 367


>gi|110678334|ref|YP_681341.1| DEAD-box ATP dependent DNA helicase [Roseobacter denitrificans OCh
           114]
 gi|109454450|gb|ABG30655.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Roseobacter
           denitrificans OCh 114]
          Length = 705

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 75/361 (20%), Positives = 133/361 (36%), Gaps = 38/361 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           + T  QE+     L       +   ++    GSGKT+   +A+A  +  G Q        
Sbjct: 24  TLTPVQEAVTAPELA------KADLLVSAQTGSGKTVGFGLAIAPTLL-GEQEHFGPAGT 76

Query: 324 --AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LAQQ    +         +V    G M     R+AL+R     AH+++ 
Sbjct: 77  PLALIIAPTRELAQQVARELSWLYAKAGAVVISCVGGMDTRTERRALDR----GAHVVVA 132

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPI 431
           T     D I+           ++L   DE    G ++ L+    +  T    LL +AT  
Sbjct: 133 TPGRLCDHIKRGNIELSGLRAVVLDEADEMLDLGFREELEFILDEAPTDRRTLLFSATVP 192

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
                L      D  +I      R+        +N     +E   + +    +A      
Sbjct: 193 KAIAKLAESYQRDAQRIETVSETRQHADIEYRALNTHPRDVENAIINVLRFYEAKNAIVF 252

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N R+ V R  +   +   S+  + G ++  ++ + + + ++G  ++ +AT V 
Sbjct: 253 ------CNTRAAVARLTTRFTNRGFSVVALSGELTQSERSNALQALRDGRARVCVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GID+ +  ++I  +        LH+  GR GR        L+  P L   +   L   
Sbjct: 307 ARGIDLPNLELVIHADLPSNSDTLLHR-SGRTGRAGRKGVSALIVPPKLRTKANRLLGWA 365

Query: 612 K 612
           K
Sbjct: 366 K 366


>gi|53718338|ref|YP_107324.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei
           K96243]
 gi|53724700|ref|YP_102079.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|67641488|ref|ZP_00440266.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
 gi|126450332|ref|YP_001081986.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei NCTC
           10247]
 gi|134279667|ref|ZP_01766379.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           305]
 gi|226196769|ref|ZP_03792349.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           Pakistan 9]
 gi|52208752|emb|CAH34688.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei
           K96243]
 gi|52428123|gb|AAU48716.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|126243202|gb|ABO06295.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10247]
 gi|134248867|gb|EBA48949.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           305]
 gi|225931300|gb|EEH27307.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           Pakistan 9]
 gi|238522432|gb|EEP85876.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
          Length = 485

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 130/369 (35%), Gaps = 42/369 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
             + ++ PT  Q  AI  +L           +     G+GKT    + +   + A     
Sbjct: 17  NELGYTQPTPIQAQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHAFYAEN 70

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             I++ T     D +Q           L+L   D     G    +K  L +       LL
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLL 186

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L  + L    + ++  +    + I   I P++R  +      ++     
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNW 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  +         +    R          S   IHG  S   +   +  FK+ T +
Sbjct: 247 FQVLVFTRT--------KHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQ 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT +   GID+     ++  +  +     +H++ GR GR       + L      + 
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKQL 357

Query: 604 SYTRLSVLK 612
                 ++K
Sbjct: 358 LRDIERLIK 366


>gi|295668368|ref|XP_002794733.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28
           [Paracoccidioides brasiliensis Pb01]
 gi|226286149|gb|EEH41715.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28
           [Paracoccidioides brasiliensis Pb01]
          Length = 803

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 81/396 (20%), Positives = 143/396 (36%), Gaps = 56/396 (14%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----- 318
           I+  + ++ P+  Q +AI   LQ+         I     GSGKT   L+ +   +     
Sbjct: 376 IIDKVGYTDPSPIQRAAIPIALQNRD------LIGVAVTGSGKTAAFLLPLLVYIGELPR 429

Query: 319 --------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                     G  A+I+AP   LAQQ     KK++      V  I G      +  +L  
Sbjct: 430 LDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSTPLGFNVVSIVGGHSLEEQAYSLRN 489

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVI-----VDEQHRFGV----------------- 408
                A III T     D I+   ++L       +DE  R                    
Sbjct: 490 ----GAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVA 545

Query: 409 --QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN 466
             +   +  +   A    +       +T++ T+     + +I  K   R  I T+     
Sbjct: 546 NEKPDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNVGE 605

Query: 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIA 519
            +D V +R++ V  E K+   +   +  ++         N +   +      ++   S  
Sbjct: 606 AVDTVEQRVEFVSGEDKRKKRLAEILASREFRPPIIVFVNIKRNCDAVARDIKNMGYSSV 665

Query: 520 IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL 579
            +HG  +   +E+ + S +NG   +L+AT +   GIDV D S+++  N      +  H++
Sbjct: 666 TLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRI 725

Query: 580 RGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
            GR GR  +    I       S   Y    +L  + 
Sbjct: 726 -GRTGRAGKSGVAITFLGNEDSDVLYDLKQMLMKSS 760


>gi|296107675|ref|YP_003619376.1| ATP-independent RNA helicase DbpA [Legionella pneumophila 2300/99
           Alcoy]
 gi|295649577|gb|ADG25424.1| ATP-independent RNA helicase DbpA [Legionella pneumophila 2300/99
           Alcoy]
          Length = 435

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 80/415 (19%), Positives = 160/415 (38%), Gaps = 59/415 (14%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           T  Q  ++  IL++         I Q   GSGKT    + +   ++      QA+++ P 
Sbjct: 2   TPIQMQSLPIILRNED------IIAQAKTGSGKTAAFALCLLNNLKISFFAVQALVLCPT 55

Query: 331 GILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA+Q  + I++       + +  ++G +P   +  +L       AHII+GT       
Sbjct: 56  RELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLGSLRH----GAHIIVGTPGRILKH 111

Query: 390 IQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
           ++   L L  V     DE  R          +       ++       +TL+ ++    +
Sbjct: 112 LKNASLDLSQVKALVLDEADRMLDMGFFDDIKN------IISICPKQRQTLLFSATYPEE 165

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-------- 496
           I +++++         V+ P   ID  IE+    +S   + + +   +            
Sbjct: 166 IKRLSKQFMKDPKEVHVVTPPEEID--IEQHFYEVSRQAQKFPLLKSLLLHYRPVSVLIF 223

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +  +  VE  + L     S+IA+ +G M  I+++  +  F N +C +L+AT V   G+D
Sbjct: 224 CNTKQQTVEVTDQLINEGFSAIAL-NGDMEQIERDLAVLRFANQSCSILVATDVAARGLD 282

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN------------S 604
           + + S +I  +        +H++ GR GR       + +  P  ++              
Sbjct: 283 IKELSAVINFDLAFDHDIHIHRI-GRTGRAGSKGIALSIVTPADAQRICAIEDNYPHPIH 341

Query: 605 YTRLSVLKNTEDG--------FLIAEEDLKQRKEGEILG--IKQSGMPKFLIAQP 649
           +  ++ L+N              IA     + + G+ILG   K +G+    I + 
Sbjct: 342 WGNINELENHNTACLVPEMVTLCIASGKKDKIRPGDILGALTKDAGLAGNTIGKI 396


>gi|222153378|ref|YP_002562555.1| DEAD box helicase family protein [Streptococcus uberis 0140J]
 gi|222114191|emb|CAR42728.1| DEAD box helicase family protein [Streptococcus uberis 0140J]
          Length = 561

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 127/341 (37%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +       QA+++AP 
Sbjct: 47  SPIQEMTIPLALEGKDV------IGQAQTGTGKTAAFGLPTLNKIRTDENIIQALVIAPT 100

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AHI++GT     D I
Sbjct: 101 RELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIKALKS----GAHIVVGTPGRLLDLI 156

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   L L  V        DE    G        +++  +    LL +AT P P + + + 
Sbjct: 157 KRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPSERQTLLFSATMPAPIKEIGVK 216

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + + +  +I  K      ++   + +   ++     +++  +  +   +  +       
Sbjct: 217 FMKNPEHVQIKNKELTNVNVEQFYVRVKEQEKFDTMTRLMDVDQPELSIVFGRT------ 270

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FK     +L+AT V   G+D+ 
Sbjct: 271 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQIDILVATDVAARGLDIS 328

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR  +    I    P 
Sbjct: 329 GVTHVYNYDITQDPESYVHRI-GRTGRAGKTGESITFVSPN 368


>gi|218689333|ref|YP_002397545.1| ATP-dependent RNA helicase DbpA [Escherichia coli ED1a]
 gi|218426897|emb|CAR07752.2| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           ED1a]
          Length = 457

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 134/364 (36%), Gaps = 37/364 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +  +   +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATP 430
            T     D +Q           L++   D     G        +     +   LL +AT 
Sbjct: 128 ATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATW 187

Query: 431 IPRTLVLTSLGDIDISKITEKPAGR-KPIKTVIIPINRIDEV-IERLKVVLSEGKKAYWI 488
                 ++     D   I         PI+      +   ++ + +  + L +       
Sbjct: 188 PEAIAAISGRVQRDPLAIEINSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVF 247

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C       + + +SV +  N + +    S   +HG +   D++  +  F NG+ ++L+AT
Sbjct: 248 CNT-----KKDCQSVCDALNEVGQ----SALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+    +++           +H++ GR  R       I    P  ++ +    
Sbjct: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIIS 357

Query: 609 SVLK 612
            +L+
Sbjct: 358 DMLQ 361


>gi|254224718|ref|ZP_04918334.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae V51]
 gi|125622781|gb|EAZ51099.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae V51]
          Length = 428

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 134/343 (39%), Gaps = 31/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 44  QPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 97

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  E +        +    + G + +  ++ AL        +I++ T     D 
Sbjct: 98  TRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAE----NPNILVATTGRLFDL 153

Query: 389 ---SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               ++  ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 154 TQSGLRLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTAGVRQTVMCSATFSDD 206

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 207 LKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 266

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +     ++HG  S   +E+ +  FKNGT ++LIAT ++  GI +  
Sbjct: 267 AKENADSLTKKLNKAGIVATVLHGDKSQAQRETALAEFKNGTTQVLIATDLLARGIHIEL 326

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGE-EISSCILLYHPPLS 601
             ++I           +H++ GR  R      +  L+ H  + 
Sbjct: 327 LPVVINFELPMHAETYVHRV-GRTARAGQHGIALSLVCHGEMD 368


>gi|157962744|ref|YP_001502778.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847744|gb|ABV88243.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 468

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 131/346 (37%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-------QA 324
           SPT  Q   I  IL       +   I     G+GKT   ++ +   +           +A
Sbjct: 23  SPTPIQAKTIPVILS------QRNLIAAAQTGTGKTASFVLPILEMLSKSETQRKKRIRA 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  + I +Y ++  +    + G +    +R+ L +       I++ T  
Sbjct: 77  LILTPTRELAVQVEDNISQYGKHLDLTSMAMYGGVDSKPQRERLIQ----GVDILVATPG 132

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I + +L  +++DE  R      ++   K      ++       ++L+ ++
Sbjct: 133 RLLDMYTQRAIHFDELEFLVLDEADRMLDMGFIEDINK------IIEKLPVDRQSLLFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                + ++  +    +PI+  +         IE+  V + + KK+  +   I+E     
Sbjct: 187 TLSRQVKELA-RATITRPIEISVTHNTDNKPKIEQWLVTVDKDKKSALLSHLIQENNWQQ 245

Query: 500 FRSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               +E       L             IHG  S   +E ++  FK+G   LLIAT +   
Sbjct: 246 ALIFIETKQGAAKLVSQLEKRGITAECIHGGRSQEIREQILADFKSGKIGLLIATGIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G+D+ +  ++I  +  +     +H++ GR GR       + L    
Sbjct: 306 GLDIDELPLVINYDLPYPADEYIHRI-GRTGRAGANGEAVALVSKD 350


>gi|323355798|gb|EGA87612.1| Fal1p [Saccharomyces cerevisiae VL3]
          Length = 372

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 71/351 (20%), Positives = 137/351 (39%), Gaps = 48/351 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +P+  Q  AI  I+           I Q   G+GKT    I +  A++      QA+I++
Sbjct: 18  APSSIQSRAITQIISGKDV------IAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILS 71

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + +K       +    ITG          L+++       + GT     D
Sbjct: 72  PTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKD---DLKKMQKHGCQAVSGTPGRVLD 128

Query: 389 SIQY-----YKLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
            I+        + ++++DE         G +Q++         +          + +V++
Sbjct: 129 MIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC---------QVVVVS 179

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEV-IERLKVVLSEGKKAYWICPQIEEKKE 497
           +  + DI ++T K     P+K ++    + DE+ +E +K  +    K  W    + +  +
Sbjct: 180 ATMNKDILEVTRKFMN-DPVKILV----KRDEISLEGIKQYVVNVDKEEWKFDTLCDIYD 234

Query: 498 ----------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                      N +  V+  +        ++  +HG M   +++ VM+ F+ G  ++LI+
Sbjct: 235 SLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIS 294

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           T V   GIDV   S++I  +        +H++ GR GR       I     
Sbjct: 295 TDVWARGIDVQQVSLVINYDLPEIIENYIHRI-GRSGRFGRKGVAINFITK 344


>gi|311109370|ref|YP_003982223.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans
           A8]
 gi|310764059|gb|ADP19508.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans
           A8]
          Length = 590

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 61/373 (16%), Positives = 118/373 (31%), Gaps = 44/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +PT  Q SAI   L           ++    GSGKT   ++     +         G Q 
Sbjct: 23  TPTPVQASAIPQALAGHD------LMVSSQTGSGKTAAFMLPALHRIAQMPANKGVGVQV 76

Query: 325 VIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q          +   +    + G MP   + KAL R    +  +++ T 
Sbjct: 77  LVLTPTRELALQVTDATATYGRKLADLRTATVVGGMPYGAQLKALSR----RVDVLVATP 132

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
               D +   +        L+L   D     G  + ++                   +TL
Sbjct: 133 GRLIDHLNSGRVKLNTVHTLVLDEADRMLDMGFIEDIETIVGRLPED---------RQTL 183

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           + ++  D  I+K+  +   R P +  +         I +  +   +      +   +   
Sbjct: 184 LFSATLDGTIAKLAAR-MMRDPQRIEMAGAKEKHTNITQSLLYADDASHKMQLLDHVLRD 242

Query: 496 KESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +        +   +           + A +HG M+   +   +   + G  ++L+AT
Sbjct: 243 AALDQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLSQLQRGQLRILVAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   GIDV   S  +  +        +H++ GR GR         L             
Sbjct: 303 DVAARGIDVQGISHAVNFDLPMQAEDYVHRI-GRTGRAGRSGLAFTLATHSERHKVRRIE 361

Query: 609 SVLKNTEDGFLIA 621
             +  +    +IA
Sbjct: 362 HYIGQSITPEVIA 374


>gi|309779776|ref|ZP_07674531.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
 gi|308921353|gb|EFP66995.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
          Length = 404

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/395 (16%), Positives = 134/395 (33%), Gaps = 44/395 (11%)

Query: 244 RKQFKKEIGIPINVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           R+  +  +            + +  + +  PT  Q  AI  IL+          +     
Sbjct: 5   RRSNRFSMSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILRG------GDLLAGAQT 58

Query: 303 GSGKTLVALIAMAAAVEAGG--------------QAVIMAPIGILAQQHYEFIKKYTQNT 348
           G+GKT    + +   + A                +A+++ P   LA Q  E ++ Y +  
Sbjct: 59  GTGKTAGFTLPLLHRLSAAQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYL 118

Query: 349 QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI-----QYYKLILVIVDEQ 403
            +   ++ G +    +  AL+R       I++ T     D +         + L+++DE 
Sbjct: 119 PLKSMVMFGGVGINPQIDALKR----GVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEA 174

Query: 404 HRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
            R      +   +K      +L       + L+ ++    DI ++ ++    KP    + 
Sbjct: 175 DRMLDMGFIHDIRK------ILNILPAKRQNLLFSATFSDDIRELADRLLD-KPALIEVA 227

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN------FRSVVERFNSLHEHFTSS 517
             N   E +E+    +   +K   +   + +            +    R           
Sbjct: 228 RRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIP 287

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
              IHG  S   +   +  FK GT ++L+AT +   GID+     ++  +  +     +H
Sbjct: 288 ALAIHGNKSQSARTRALTEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVH 347

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           ++ GR GR       I L              ++K
Sbjct: 348 RI-GRTGRAGAQGEAISLVCVDEHGLLRDIERLIK 381


>gi|293628906|dbj|BAJ04860.1| vasa homolog [Cynops pyrrhogaster]
          Length = 717

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 135/373 (36%), Gaps = 47/373 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
             T  Q+ +I  +L       +   +     GSGKT   L+ + A +   G         
Sbjct: 297 KLTPVQKHSIPIVLA------KRDLMACAQTGSGKTAAFLLPILAHMMQDGVAPHSLDLQ 350

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+AP   L  Q +   +K+   T I   ++ G         +L +I  G  +I+ 
Sbjct: 351 EPEAIIVAPTRELINQIFLDARKFAYGTCIKPVVVYGGT---QTFHSLRQIYQG-CNILC 406

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKL------TQKATAPHVLLM 426
            T     D I+  K        L+L   D     G    +K+               L+ 
Sbjct: 407 ATPGRLLDIIRREKIGLAKLRYLVLDEADRMLDMGFGPDMKILITSPGMPSKEERQTLMF 466

Query: 427 TATPIPRTLVL---TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           +AT   R   L       D     + +       ++ +IIP+ +  +  + ++++   G 
Sbjct: 467 SATFPERIQSLAKEFLKSDYLFVVVGQVGGACSDVEQIIIPVGQHGKKDKLVEILQGLGT 526

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           +   +            +   +   +L          IHG     ++E  +  F+ G C 
Sbjct: 527 ERTMVFV--------KTKKKADYLTTLLCQENVLATSIHGDRLQKEREEALADFRFGKCN 578

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+D+ +   +II +        +H++ GR GR   +   I  +    +++
Sbjct: 579 VLVATNVAARGLDIENVQHVIIFDLSDNIEEYVHRI-GRTGRCGNVGKAITFFDSDDNED 637

Query: 604 SYTRLSVLKNTED 616
                S++K   D
Sbjct: 638 RTVARSLVKVLSD 650


>gi|197116587|ref|YP_002137014.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
 gi|197085947|gb|ACH37218.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
          Length = 453

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 127/345 (36%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
            PT  Q  +I   L           I     G+GKT   ++     +         G + 
Sbjct: 23  QPTPIQAESIPLALSGRD------LIGSAQTGTGKTASFVLPALERLLTPSPLRGKGPRI 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  + ++ Y +  ++    I G MP   +   L +       II+ T  
Sbjct: 77  LVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMMLLAQP----VDIIVATPG 132

Query: 385 LFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I + +L ++++DE  R            +     +   A    +TL+ T+
Sbjct: 133 RLIDHLDRRSINFSRLEMLVLDEADRM------LDMGFSEDVDRIANAAPAERQTLLFTA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPIN----RIDEVIERLKVVLSEGKKAYWICPQIEEK 495
             D  ++K+ ++   + P++  +        +I++ +     +  + +    +       
Sbjct: 187 TMDDAMAKLAQR-LLKDPVRVAVEGTEVANLQIEQRLHVTDDMRHKNRLLQHLVSDASVT 245

Query: 496 KESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
           K   F +  +  + L     S   + A +HG MS   +   +   + G  +LL+AT V  
Sbjct: 246 KAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITMMRRGKVRLLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
            G+DV   S +I  +   F    +H++ GR GR       I    
Sbjct: 306 RGLDVTGISHVINYDLPKFAEDYVHRI-GRTGRAGATGIAISFCS 349


>gi|325860554|ref|ZP_08173658.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|325481939|gb|EGC84968.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
          Length = 572

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 133/373 (35%), Gaps = 44/373 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL+          +     G+GKT   L+ + + +  GG        VIM
Sbjct: 25  TPVQEKCIPEILKG------NDVLGVAQTGTGKTAAYLLPVLSKLADGGYPESAINCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +P   LAQQ  + ++ +      +    + G        + L+ ++ G A ++I T   F
Sbjct: 79  SPTRELAQQIDQAMQGFAYYLDGVSCVAVYGGNDGNRYDQELKSLSLG-ADVVIATPGRF 137

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLV 436
              I    +        IL   D     G  + +    K    +   ++ +AT   +   
Sbjct: 138 ISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLPASCQTIMFSATMPKKIEE 197

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           L      +  +I              + +++  E I ++  V  E +K   I    +   
Sbjct: 198 LAKTLLKNPVEIK-------------LAVSKPAEKIHQMAYVCYETQKMGIIKDIFKAGD 244

Query: 497 ESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +  V++  +       +   +H  +    +  VM  FK+G   +L+AT +
Sbjct: 245 LKRVIIFSGSKQKVKQIAASLGRKHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDI 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +  GID+ D +++I  +  H     +H++ GR  R +     I   +           S 
Sbjct: 305 VARGIDIDDIAMVINYDVPHDAEDYVHRI-GRTARADRDGKAITFVNVDDIYYFKQIESF 363

Query: 611 LKNTEDGFLIAEE 623
           L    +   + EE
Sbjct: 364 LDKEVEKIPLPEE 376


>gi|304387245|ref|ZP_07369442.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria meningitidis ATCC
           13091]
 gi|304338733|gb|EFM04846.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria meningitidis ATCC
           13091]
          Length = 457

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 127/368 (34%), Gaps = 34/368 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q +AI   L           +     G+GKT   ++     ++    A        
Sbjct: 26  PTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHP 79

Query: 325 ---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++ P   LA Q  + ++ Y +N  +   ++ G M    +   L         I++ 
Sbjct: 80  VRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCE----IVVA 135

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D ++   + L  V E        R+           ++       +TL+ ++  
Sbjct: 136 TVGRLLDHVKQKNISLNKV-EIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSATF 194

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---- 497
              I K+ +      P    +   N  +  +E+  + +   +K   +   I +       
Sbjct: 195 SAPIRKLAQDFMN-APETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLHMNQVI 253

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +  V+R          S   IHG  S   +   +++FK+G+ ++L+AT +   G+
Sbjct: 254 VFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARGL 313

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+ +   +I           +H++ GR GR       I L    + ++       +K   
Sbjct: 314 DIAELPFVINYEMPAQPEDYVHRI-GRTGRAGADGVAISL----MDESEQKMFESIKELT 368

Query: 616 DGFLIAEE 623
              L+ E 
Sbjct: 369 GNKLLIER 376


>gi|332098054|gb|EGJ03027.1| ATP-independent RNA helicase dbpA [Shigella dysenteriae 155-74]
          Length = 432

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 131/351 (37%), Gaps = 24/351 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           T  Q +A+  IL     +      +Q   GSGKT    + +   ++A     QA+++ P 
Sbjct: 2   TPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPT 55

Query: 331 GILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    +++  +      +  + G  P   +R +L+       HII+ T     D 
Sbjct: 56  RELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIVATPGRLLDH 111

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +Q   + L  +          R+     + A   ++  A    +TL+ ++     I+ I+
Sbjct: 112 LQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAIS 170

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSV 503
            +   R P+   I   + +   IE+     S   K   +   +   +        N +  
Sbjct: 171 GR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 228

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +           S   +HG +   D++  +  F NG+ ++L+AT V   G+D+    ++
Sbjct: 229 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSTRVLVATDVAARGLDIKSLELV 288

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +           +H++ GR  R       I    P  ++ +     +L+ T
Sbjct: 289 VNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQIT 338


>gi|45198439|ref|NP_985468.1| AFL080Wp [Ashbya gossypii ATCC 10895]
 gi|74693084|sp|Q755A5|DBP3_ASHGO RecName: Full=ATP-dependent RNA helicase DBP3
 gi|44984326|gb|AAS53292.1| AFL080Wp [Ashbya gossypii ATCC 10895]
          Length = 535

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 140/370 (37%), Gaps = 43/370 (11%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
           +   P  PT  Q  +   +L           I   + GSGKT    +    ++ +     
Sbjct: 140 ISKFP-KPTPIQAVSWPYLLAGKDV------IGVAETGSGKTFAFGVPAINSLMSEKSTP 192

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
            G + ++++P   LA Q Y+ + + T    +    + G + +  +R+ L+     +A ++
Sbjct: 193 RGVKCLVISPTRELASQIYDNLVQLTDKVGLNCCCVYGGVQKDSQREQLK-----KAQVV 247

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHV---LLMTA 428
           + T     D I+           L+L   D     G ++ +K   K T   V   L+ TA
Sbjct: 248 VATPGRLLDLIEEGSAKLAGVQYLVLDEADRMLEKGFEEDIKRIIKETKSDVRQTLMFTA 307

Query: 429 TPIPRTLVLTSLGDIDISKI-----TEKPAG--RKPIKTVIIPINRIDEVIERLKVVLSE 481
           T       L S       K+      E  A      +  VI P  +   ++E LK   S 
Sbjct: 308 TWPKEVRELASTFMRAPVKVSIGNRDELSANKRITQVVEVIDPFKKEKRLLELLKQYQSG 367

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
            KK   +      KKE++      R     ++   ++A IHG +S   +   +  FK GT
Sbjct: 368 AKKNDKVLIFALYKKEAS------RVERNLKYNGYNVAAIHGDLSQQQRTQALSEFKAGT 421

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             LL+AT V   G+D+ +   +I           +H++ GR GR         L+     
Sbjct: 422 ANLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRI-GRTGRAGATGVAHTLFTEQEK 480

Query: 602 KNSYTRLSVL 611
             +   ++VL
Sbjct: 481 HLAGALVNVL 490


>gi|319795121|ref|YP_004156761.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315597584|gb|ADU38650.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 496

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 118/347 (34%), Gaps = 42/347 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------- 321
           + T  QE AI  +L           +     G+GKT    + +   +             
Sbjct: 25  TMTPIQEQAIPVVLSGQDV------MGAAQTGTGKTAAFSLPLLQRMLKHENASTSPARH 78

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+++ P   LA Q  + +K Y + T +   ++ G +    +   L++       +++
Sbjct: 79  PVRALVLLPTRELADQVAQQVKLYAKYTNLRSTVVFGGIDMKPQTLELKK----GVEVLV 134

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFG-----VQQRLKLTQKATAPHVLLMTAT- 429
            T     D I+    +L  V     DE  R          +  L+        LL +AT 
Sbjct: 135 ATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSATF 194

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
            P  + L  + L +    ++         ++     ++  D+     ++V   G    ++
Sbjct: 195 SPEIKRLAGSYLQNPVTIEVARPNETASTVEQHFYSVSDDDKRRALKQIVKQRGITQAFV 254

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                     N +    R     E        +HG  S  ++   + SFK G   LL+ T
Sbjct: 255 FV--------NSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEVDLLVCT 306

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   G+D+ D   +   +        +H++ GR GR       +  
Sbjct: 307 DVAARGLDIKDVPAVFNFDIPFNAEDYVHRI-GRTGRAGASGLAVSF 352


>gi|298488858|ref|ZP_07006883.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298156611|gb|EFH97706.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 442

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 131/351 (37%), Gaps = 38/351 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + +PT  Q  AI  +L           +     G+GKT    + +   +   G  
Sbjct: 16  LEALGYQTPTPVQTQAIPPVLAGRD------LMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+++AP   LA Q +E I++Y ++  +      G +    +   L +      
Sbjct: 70  VAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRK----GV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +++ T     D     ++++ +L  +I+DE  R        L          +    P 
Sbjct: 126 DVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRM-------LDLGFAEELRGIYAVLPK 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  ++        P+   + P N     +++  V + + +KA      
Sbjct: 179 QRQTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHL 238

Query: 492 IEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +++ +          R  V++     +    +   IHG      ++  +D FK+   K+L
Sbjct: 239 MKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKIL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +AT V   G+D+ D   ++  +        +H++ GR GR       I L 
Sbjct: 299 VATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGLTGEAISLV 348


>gi|167561646|ref|ZP_02354562.1| putative ATP-dependent RNA helicase rhlE [Burkholderia oklahomensis
           EO147]
          Length = 395

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 132/378 (34%), Gaps = 42/378 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------- 318
             + ++ PT  Q  AI  +L           +     G+GKT    + +   +       
Sbjct: 17  NELGYTQPTPIQAQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHTFYAEN 70

Query: 319 ---EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             I++ T     D +Q           L+L   D     G    +K  L +       LL
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPKKRQNLL 186

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L  + L    + ++  +    + +   I P++R  +      ++     
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNW 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  +         +    R          S   IHG  S   +   +  FK+ T +
Sbjct: 247 FQVLVFTRT--------KHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQ 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT +   GID+     ++  +  +     +H++ GR GR       + L      + 
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKQL 357

Query: 604 SYTRLSVLKNTEDGFLIA 621
                 ++K      +IA
Sbjct: 358 LRDIERLIKREISQEVIA 375


>gi|301166259|emb|CBW25834.1| putative ATP-dependent RNA helicase [Bacteriovorax marinus SJ]
          Length = 431

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 76/368 (20%), Positives = 132/368 (35%), Gaps = 42/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           +PT  Q  AI  IL+    +           GSGKT    I M   +    Q        
Sbjct: 24  TPTDIQREAIPLILEGRDIQGI------AQTGSGKTGAFSIPMIENLSRSKQVVKAKRAR 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q    ++ Y++   +   +I G     ++ + L         ++I T 
Sbjct: 78  ALILTPTRELANQINGQVEIYSKGMNLSSAVIFGGDGPLNQVRKLAT----GVDLLIATP 133

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D      I+  +L   ++DE  R      +K  +K      ++       +TL  +
Sbjct: 134 GRLLDFLQRGHIKLDELETFVLDEADRMLDMGFIKDIEK------IIERLPKKRQTLFFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +    DISK+      R  I   + P +   E I +  + +   +K   +   I E    
Sbjct: 188 ATMPKDISKLASTILTRPKI-IEVSPPSTPVESIAQYLIHIDRVQKPKLLKKIINESVSE 246

Query: 498 -----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  +   +R            + IH   S   +E  + +F+N   K L+AT +  
Sbjct: 247 SVIVFTRTKYGADRVCKHLMKAGIESSSIHSNRSQGAREKALAAFRNKKIKALVATDIAA 306

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GIDV   S +I  +      + +H++ GR  R  +         P  +K+      +L 
Sbjct: 307 RGIDVDGISHVINYDVPLEAESYIHRI-GRTARAGKSGVAYTFCDPAETKSLKAVEKLL- 364

Query: 613 NTEDGFLI 620
               GF I
Sbjct: 365 ----GFKI 368


>gi|301601272|dbj|BAJ12168.1| DEAD box protein [Rana rugosa]
          Length = 736

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 139/374 (37%), Gaps = 48/374 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-AGGQ------- 323
             T  Q+ +I  I+           +     GSGKT   L+ + A +   G Q       
Sbjct: 320 KLTPIQKHSIPIIVAGRD------LMACAQTGSGKTAAFLLPILAHLMMKGVQSSAFQAL 373

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               A+I+AP   L  Q Y   +K+   T +   +I G         +L++I+ G  +I+
Sbjct: 374 KEPEAIIVAPTRELINQIYLDARKFAYGTCVRPVVIYGGT---QTFHSLKQISEG-CNIL 429

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKL------TQKATAPHVLL 425
             T     D I+  K        L+L   D     G ++ ++                L+
Sbjct: 430 CATPGRLLDIIRKEKIGLTKLRFLVLDEADRMLDMGFREDIENLLRSPGMPSKEERQTLM 489

Query: 426 MTATPI--PRTLVLTSL-GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            +AT     ++L    L  D     + +       ++  +I +    +  + ++++   G
Sbjct: 490 FSATFPSSIQSLAKXMLKPDYLFVVVGQVGGACSDVQQEVIEVEEFGKKDKLMEILQVIG 549

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
            +   +  + ++K +            L +    S +I HG     ++E+ +  F+ G C
Sbjct: 550 SERTMVFVKTKKKADFI-------ATFLCQEKVPSTSI-HGDREQRERETALRDFRTGQC 601

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +++AT+V   G+D+ + S +I  +        +H++ GR GR       I  +      
Sbjct: 602 PVIVATSVAARGLDIENVSHVINFDIPDDIDEYVHRI-GRTGRCGNTGRAISFFDKRGDD 660

Query: 603 NSYTRLSVLKNTED 616
                 S++K   D
Sbjct: 661 EQRIARSLVKVLSD 674


>gi|168037666|ref|XP_001771324.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677413|gb|EDQ63884.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 128/347 (36%), Gaps = 33/347 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFTKGLDV------IQQAQSGTGKTATFCSGILQQLDYQLLECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++      Q+ V    G       ++ L+       H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVYD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 172 MLRRNALRADAIKCFVLDEADEMLSRGFKDQIYDIFQLLPQKLQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   KI  K      + IK   + ++R +  ++ L          Y      +   
Sbjct: 232 RKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           V   S++I  +        LH++ GR GR       I        + 
Sbjct: 345 VQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRDDDRM 390


>gi|139438943|ref|ZP_01772403.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
           25986]
 gi|133775654|gb|EBA39474.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
           25986]
          Length = 749

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 73/391 (18%), Positives = 135/391 (34%), Gaps = 59/391 (15%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----- 319
           + N+ ++ PT  Q  +I  +L+          +     G+GKT   L+     +E     
Sbjct: 61  IENLGYTAPTPVQAGSIPVVLEGRD------LLAAAQTGTGKTAAFLLPTMNNLEHIAPP 114

Query: 320 ----------------------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
                                  G   +++ P   LAQQ  E   K    T  +   + G
Sbjct: 115 KPVRERGGRNRRRGAKKPEGNGRGPVMLVITPTRELAQQIDEVAGKIADVTGHVAVTVVG 174

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY--------YKLILVIVDEQHRFGV- 408
            +    +  AL+        I++ T     D I+           L+L   D     G  
Sbjct: 175 GVSYKPQTAALKY----GCDILVATPGRLVDLIEQGACHLDEVKVLVLDEADRMLDMGFL 230

Query: 409 -QQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKP--IKTVIIPI 465
              R  + +       LL +AT     +   +    D +++   PA      +   + P+
Sbjct: 231 PAVRRIVRETPAERQTLLFSATLDEEAVGEITDLVSDPARVEIAPATSTADTVDQFVFPV 290

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM 525
           +   +     + +  EG +   +  + + + +S  R          E      A IHG  
Sbjct: 291 SIEAKNNLLPEFLKKEGPERTIVFMRTKHRADSCCRR--------LERKGIKAAAIHGNR 342

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
           S   +E  + +F++GT  +L+AT V+  GID+ D   ++  +        +H++ GR GR
Sbjct: 343 SQAQRERALSAFRDGTVDVLVATDVLARGIDISDVRYVVNFDVPAEPTDYIHRI-GRTGR 401

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
             E+   I           Y    ++  T D
Sbjct: 402 AGELGWAITFVTEQDVDEFYEIEKLMDKTAD 432


>gi|159043402|ref|YP_001532196.1| DEAD/DEAH box helicase domain-containing protein [Dinoroseobacter
           shibae DFL 12]
 gi|157911162|gb|ABV92595.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL
           12]
          Length = 730

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 141/388 (36%), Gaps = 47/388 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           + T  Q +     L           ++    GSGKT+   +A+A  + A           
Sbjct: 19  TLTPVQIAVSDPAL------VEADLLVSAQTGSGKTVAFGLAIAPTLLADAAAFGPAAAP 72

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++AP   LA Q    ++         +    G M     R+AL R     AH+++ T
Sbjct: 73  LGLVIAPTRELAMQVRRELEWLYGPAGAQITSCVGGMDARDERRALGR----GAHVVVAT 128

Query: 383 HALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP 432
               +D I+   + L  V        DE    G ++ L+       +    L+ +AT  P
Sbjct: 129 PGRLRDHIERGNIDLDAVRAVVLDEADEMLDLGFREDLEFILGAAPSERRTLMFSATVPP 188

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKT-----VIIPINRIDEVIERLKVVLSEGKKAYW 487
               L  L   D  +I+ +   R+         V+ P +  + +I  L+    E   A  
Sbjct: 189 AIASLAQLYQKDARRISTRAETRQHADIAYRAMVVGPRDEENAIINVLRY--YEAANAIV 246

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C           R++V R  +   +    +  + G ++  ++   + + ++G  ++ +A
Sbjct: 247 FCNT---------RAMVNRLTTRFSNRGFQVVALSGELTQSERTHALQAMRDGRAQVCVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  +++           LH+  GR GR        ++      K +   
Sbjct: 298 TDVAARGIDLPNLELVVHAELPSSSDTLLHR-SGRTGRAGRKGVSAVIVPVKFRKKAERL 356

Query: 608 LSVLKNTEDGF-LIAEEDLKQRKEGEIL 634
           L   K T D     + ED++ +    +L
Sbjct: 357 LKWAKVTPDWVSPPSAEDVRAQDAARLL 384


>gi|283769405|ref|ZP_06342304.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
 gi|283104062|gb|EFC05446.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
          Length = 425

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 70/350 (20%), Positives = 129/350 (36%), Gaps = 36/350 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIM 327
            P+  QE  I  +L+          I     G+GKT    + +  ++        +A+I+
Sbjct: 23  KPSPIQEKGIPILLEG------SDLIACAQTGTGKTATFALPILNSLSKEKNHSIRALIL 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LA Q +E IK + +   +    + G  P A + KA+         I+I T     
Sbjct: 77  TPTRELATQIFENIKMFGRYMHLRACCVYGGSPAAPQLKAIRS----GCDILIATPGRLL 132

Query: 388 DSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--RTL 435
           D + + K        L+L   D     G     R  + Q        L +AT     + L
Sbjct: 133 DYLAHGKISLRHIEFLVLDEADRMLDMGFIADVRKIVQQIPNDRITALFSATMPKEIQEL 192

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L +    +I  +      I   +I   +  +    + ++ +E  K   +  +    
Sbjct: 193 ARDILKNPKEVRIEAEKFTASTIDQYLIYTEKSSKKKVLVNLLNTESIKKTIVFTRT--- 249

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   +R     +    +  +IHG  +   + + +  F+    ++LIAT V   GI
Sbjct: 250 -----KIGADRLEKYLKEKEIACLVIHGDKTQGQRLNALQRFRTNQIRILIATDVAARGI 304

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGE-EISSCILLYHPPLSKNS 604
           D+ D S +I  +        +H++ GR GR + E  S  L+    L+  +
Sbjct: 305 DIKDISHVINFDLPEDIENYVHRI-GRTGRAKQEGVSISLVCKEELNLLA 353


>gi|261212735|ref|ZP_05927019.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
 gi|260837800|gb|EEX64477.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
          Length = 408

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 66/337 (19%), Positives = 130/337 (38%), Gaps = 30/337 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q   I  +L           +   + GSGKTL   + +   ++     QA+++ P
Sbjct: 22  QPTAIQTLVIPAMLTGKDV------LALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 75

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA Q  E +        +    + G + +  ++ AL        +I++ T     D 
Sbjct: 76  TRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAE----NPNILVATTGRLFDL 131

Query: 390 IQ----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
            Q      ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 132 TQSGLSLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTASVRQTVMCSATFSDE 184

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 185 LKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 244

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +      +HG  S  ++E+ +  FKNG  ++LIAT ++  GI +  
Sbjct: 245 AKENADSLTKKLNKAGVVATALHGDKSQTEREAALAEFKNGLTQVLIATDLLARGIHIEQ 304

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             ++I           +H++ GR  R  +    + L 
Sbjct: 305 LPVVINFELPMHAQTYVHRV-GRTARAGQQGIALSLV 340


>gi|15228722|ref|NP_188870.1| PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent
           helicase/ DNA binding / RNA binding [Arabidopsis
           thaliana]
 gi|75335517|sp|Q9LUW6|RH9_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 9
 gi|9293865|dbj|BAB01768.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|20268676|gb|AAM14042.1| putative RNA helicase [Arabidopsis thaliana]
 gi|332643099|gb|AEE76620.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
          Length = 610

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 132/360 (36%), Gaps = 33/360 (9%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---------EAGGQAV 325
             Q++ ++  ++          I +   G+GKTL   I +   +             Q +
Sbjct: 141 PIQKAVLEPAMEGRD------MIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCL 194

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA+Q  +  ++   +   I   + G  P   + + L    +    + +GT   
Sbjct: 195 VLAPTRELARQVEKEFRESAPSLDTI--CLYGGTPIGQQMREL----NYGIDVAVGTPGR 248

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             D ++   L L  V +        ++     A    ++L       ++++ ++     I
Sbjct: 249 IIDLMKRGALNLSEV-QFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWI 307

Query: 446 SKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEK----KESNF 500
             +T+K         ++   + ++ + I    +      +A  I P ++E     K   F
Sbjct: 308 RSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKCIVF 367

Query: 501 RSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
                  + L      S     +HG +S   +E  +  F++G   +L+AT V   G+DV 
Sbjct: 368 TQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVP 427

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           +  ++I     +     +H+  GR GR  +  S IL++    +        + K     F
Sbjct: 428 NVDLVIHYELPNNTETFVHR-TGRTGRAGKKGSAILIHGQDQT---RAVKMIEKEVGSRF 483


>gi|28901554|ref|NP_801209.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363105|ref|ZP_05775974.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260880390|ref|ZP_05892745.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260894758|ref|ZP_05903254.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|260900107|ref|ZP_05908502.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|28810101|dbj|BAC63042.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308089408|gb|EFO39103.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308092166|gb|EFO41861.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308109992|gb|EFO47532.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|308111933|gb|EFO49473.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 412

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 66/337 (19%), Positives = 123/337 (36%), Gaps = 30/337 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            PT  Q  AI ++L           +   + GSGKTL   + +   +      +A+I+ P
Sbjct: 22  KPTDIQALAIPELLAGQD------LLALANTGSGKTLAYGLPLLEKLRVNPEQKALILVP 75

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  E I +  Q   +    + G + +  +++AL        HI++ T     D 
Sbjct: 76  TRELAMQVSEAINQVGQALDLNTVCLCGGVDKEQQQQALAT----NPHILVATTGRLVDL 131

Query: 389 ---SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               +   K+  +++DE  R          Q        +   T   R   + S    D 
Sbjct: 132 ANNGLDLSKVHYLVLDEADRLLDMGFWPDVQN-------IAMQTSNQRQTAMFSATFSDE 184

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF----- 500
            K   K   + P +      N  ++ I     ++++G K   +   I++   +       
Sbjct: 185 LKGKVKLLMQAPKQVAAHQENSTNQDIVETLYLVNKGSKTKALIELIKQNSWTQVLVFIG 244

Query: 501 -RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            +   +           S   +HG  S  ++E  +  FK+G  ++LIAT ++  GI +  
Sbjct: 245 AKENADGLAKKLNKAGISTNALHGDKSQAEREEALAQFKSGQIQVLIATDLLARGIHIEQ 304

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             ++I           +H++ GR  R  E    + L 
Sbjct: 305 LPVVINFELPMHAETYVHRV-GRTARAGEQGVAMSLV 340


>gi|76811549|ref|YP_332327.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
 gi|126454229|ref|YP_001065030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106a]
 gi|242316165|ref|ZP_04815181.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106b]
 gi|254196606|ref|ZP_04903030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           S13]
 gi|254260651|ref|ZP_04951705.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1710a]
 gi|76581002|gb|ABA50477.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
 gi|126227871|gb|ABN91411.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106a]
 gi|169653349|gb|EDS86042.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           S13]
 gi|242139404|gb|EES25806.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106b]
 gi|254219340|gb|EET08724.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1710a]
          Length = 485

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 130/369 (35%), Gaps = 42/369 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
             + ++ PT  Q  AI  +L           +     G+GKT    + +   + A     
Sbjct: 17  NELGYTQPTPIQAQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHAFYAEN 70

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             I++ T     D +Q           L+L   D     G    +K  L +       LL
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLL 186

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L  + L    + ++  +    + I   I P++R  +      ++     
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNW 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  +         +    R          S   IHG  S   +   +  FK+ T +
Sbjct: 247 FQVLVFTRT--------KHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQ 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT +   GID+     ++  +  +     +H++ GR GR       + L      + 
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKQL 357

Query: 604 SYTRLSVLK 612
                 ++K
Sbjct: 358 LRDIERLIK 366


>gi|330987668|gb|EGH85771.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 442

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 131/351 (37%), Gaps = 38/351 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + +PT  Q  AI  +L           +     G+GKT    + +   +   G  
Sbjct: 16  LEALGYQTPTPVQTQAIPPVLAGRD------LMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+++AP   LA Q +E I++Y ++  +      G +    +   L +      
Sbjct: 70  VAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRK----GV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +++ T     D     ++++ +L  +I+DE  R        L          +    P 
Sbjct: 126 DVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRM-------LDLGFAEELRGIYAVLPK 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  ++        P+   + P N     +++  V + + +KA      
Sbjct: 179 QRQTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHL 238

Query: 492 IEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +++ +          R  V++     +    +   IHG      ++  +D FK+   K+L
Sbjct: 239 MKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKIL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +AT V   G+D+ D   ++  +        +H++ GR GR       I L 
Sbjct: 299 VATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGLTGEAISLV 348


>gi|242067108|ref|XP_002454843.1| hypothetical protein SORBIDRAFT_04g038330 [Sorghum bicolor]
 gi|241934674|gb|EES07819.1| hypothetical protein SORBIDRAFT_04g038330 [Sorghum bicolor]
          Length = 407

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 132/371 (35%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+ A+  I+           I Q   G+GKT +  + +   V+      QA+I++
Sbjct: 56  KPSAIQQRAVLPIINGRDV------IAQAQSGTGKTSMISLTVCQIVDTAVREVQALILS 109

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    +     +  + V    G        + LE       H++ GT     D
Sbjct: 110 PTRELASQTERVMLAIGDHLNVQVHACIGGKSIGEDIRRLEN----GVHVVSGTPGRVCD 165

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G + ++            V L++AT     L +T
Sbjct: 166 MIKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMT 225

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           S    +  +I  K      + IK   + + + +   + L  +       +A   C     
Sbjct: 226 SKFMTEPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT--- 282

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+           +++ +HG M   +++++M  F++G  ++LI T V   G
Sbjct: 283 ------KRKVDWLTEKMRSNNFTVSAMHGDMPQQERDAIMGEFRSGDTRVLITTDVWARG 336

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S++I  +  +     +H++ GR GR       I        +            
Sbjct: 337 LDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVRKDDIRILRDIEQYYSTQ 395

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 396 IDEMPMNVADL 406


>gi|146305460|ref|YP_001185925.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145573661|gb|ABP83193.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 628

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 121/361 (33%), Gaps = 32/361 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPDGHPDREQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q ++  K Y ++ + +   I G +    + +AL +       +
Sbjct: 77  PKQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQVQALAK----GVDV 132

Query: 379 IIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           ++       D      + L  V E        R+           +L       + L+ +
Sbjct: 133 LVACPGRLLDLANQKAIDLSHV-EILVLDEADRMLDMGFIHDVKKVLAKLPAKRQNLLFS 191

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    DI+ +  K     P +  + P N   E IE+    L+   K   +   I +    
Sbjct: 192 ATFSKDITDLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALLAHLITQGAWE 250

Query: 499 N------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                   +    R     E      A IHG  S   +   +  FK    ++L+AT +  
Sbjct: 251 QVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANKVRILVATDIAA 310

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+     ++     +     +H++ GR GR       I L  P   K   +   + K
Sbjct: 311 RGLDIDQLPHVVNFELPNVEEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSIERMTK 369

Query: 613 N 613
            
Sbjct: 370 Q 370


>gi|92081444|dbj|BAE93269.1| RNA helicase [Tubifex tubifex]
          Length = 402

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 123/333 (36%), Gaps = 41/333 (12%)

Query: 295 LRILQGDVGSGKTLVALIAMAA------------AVEAGGQAVIMAPIGILAQQHYEFIK 342
             +     GSGKT   L+ +              +V    QA+I+ P   L  Q Y   +
Sbjct: 5   DMMACAQTGSGKTAAFLLPVLTGMLRNGVEGGQFSVVQEPQAIIVGPTRELVTQIYNEAR 64

Query: 343 KYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL----- 397
           K+  NT +   ++ G +   ++     R     AH+++GT     D I+   L L     
Sbjct: 65  KFAHNTMVRPVVVYGGVTTGYQ----AREVSKGAHLVVGTAGRLLDFIRKGYLSLAKVKY 120

Query: 398 VIVDEQHRFGVQQRLKLTQK---------ATAPHVLLMTATPIP--RTLVLTSLGDIDIS 446
            I+DE  R      L               T    L+ +AT     + L    L D    
Sbjct: 121 FILDEADRMLDMGFLPNMMALANELGMPAKTERQTLMFSATFPEEVQQLAKELLNDYIFV 180

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
            +         I+  ++ +++ ++  + + ++ S+G++   +            +   + 
Sbjct: 181 TVGRVGGANTDIEQHVLQVDQFNKREKLVSILNSQGQQRTLVFV--------EQKRQADF 232

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
             S           IHG     ++E  +  FKNGT  +L+AT+V   G+D+   + +I  
Sbjct: 233 IASYLSQSEFPTTSIHGDREQREREEALRDFKNGTAPILVATSVAARGLDIPGVNHVINF 292

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +        +H++ GR GR   +      ++P 
Sbjct: 293 DMPQSIDEYVHRI-GRTGRCGNLGRATSFFNPS 324


>gi|307105760|gb|EFN54008.1| hypothetical protein CHLNCDRAFT_31911 [Chlorella variabilis]
          Length = 556

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 70/414 (16%), Positives = 142/414 (34%), Gaps = 66/414 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  +I   L           +     GSGKT      +   +   G         
Sbjct: 54  KPTPVQRYSIPIGLAGRD------MMACAQTGSGKTAAFCFPIIGNILRSGYTPLRGSRK 107

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
               A++++P   L+ Q Y+  +K+T  T +   ++ G  PQ  + + LER        +
Sbjct: 108 AFPLALVLSPTRELSTQIYDESRKFTYQTGVRPVVVYGGAPQQQQLRELER----GCDFL 163

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT--AT 429
           + T     D +   +        L L   D     G + +++          L  +  A 
Sbjct: 164 VATPGRLIDIMDRARVSLGKVRFLALDEADRMLDMGFEPQIRRRGPLPGLPRLSPSPAAA 223

Query: 430 P----------------------------IPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
           P                              +TL+ ++    +I ++           TV
Sbjct: 224 PEAWPCRRGLPRPRRNPPIVDEEDMPRPGERQTLLFSATFPKEIQRLAADFLHNYIFLTV 283

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYW--ICPQIEEKKESNFRSVVERFNSLHEHFTSS-- 517
               +  D +++ ++ V  + K+     +   +E+     F    +  ++L +    +  
Sbjct: 284 GRVGSSTDLIVQVIEYVPIQDKRQMVLDLLQTLEKGLTLIFVETKKGADALEDFLCRNGL 343

Query: 518 -IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               IHG  S  ++E+ + SF+ G   +L+AT V   G+D+   + +I  +        +
Sbjct: 344 PATSIHGDRSQAEREAALRSFRTGRTPVLVATDVAARGLDIPHVTHVINFDLPSDIDDYV 403

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKE 630
           H++ GR GR  +       +    +  S   + +L  T        +++ QR  
Sbjct: 404 HRI-GRTGRAGKKGLATAFFSEKDTGISSKLVEILSETNQEVPAWLQNMAQRSA 456


>gi|297625843|ref|YP_003687606.1| hypothetical protein PFREUD_06320 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921608|emb|CBL56162.1| Hypothetical protein PFREUD_06320 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 1043

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 79/375 (21%), Positives = 142/375 (37%), Gaps = 40/375 (10%)

Query: 243 MRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDV 302
           +R+Q  +     + V   I +++      +P   Q++AI D L           + +G  
Sbjct: 607 VRRQKGRTRFSELGVPQPIVEELDSQGILAPFPIQQAAIPDALSGRDV------LGRGQT 660

Query: 303 GSGKTLVALIAMAAAVEAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
           GSGKTL   I +   + A G       +A++MAP   LAQQ  + +    +   +   ++
Sbjct: 661 GSGKTLAFGIPVITRLAASGTGHGRQPRALLMAPTRELAQQVNDVLFPLAKAMGLSTILV 720

Query: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY--------KLILVIVDEQHRFG 407
            G M    + +ALER       I++ T     D I+          +++L   DE    G
Sbjct: 721 AGGMSYTPQLRALER----GVDIVVATPGRLIDLIERGSAKLGEVQEVVLDEADEMADMG 776

Query: 408 VQQRL--KLTQKATAPHVLLMTATPIPR--TLVLTSLGDIDISKITEKPAGRKPIKTVII 463
               +   L + +     LL +AT   +  T+V   + D     +    A    ++  + 
Sbjct: 777 FMPDVTRILDEISREAQHLLFSATLDRQVDTIVRRYMHDPVEHGVDSAKASVTTMRHELW 836

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHG 523
            +N  D+     +     G+   ++            +   +R              +HG
Sbjct: 837 TVNARDKAAIIAQAANRPGRTLVFV----------RTQRDADRTAEQLRDLGLMAGALHG 886

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
            +    +  V+ +F+ G   +L+AT V   GIDV D S+++  +  H     LH+  GR 
Sbjct: 887 GLPQGMRARVLYAFRQGRVPVLVATDVAARGIDVDDVSLVLQADPPHDSKDYLHR-AGRT 945

Query: 584 GRGEEISSCILLYHP 598
            R  E      L  P
Sbjct: 946 ARAGEDGLVATLVLP 960


>gi|291404256|ref|XP_002718616.1| PREDICTED: nucleolar protein GU2-like [Oryctolagus cuniculus]
          Length = 780

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 143/423 (33%), Gaps = 72/423 (17%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---------AGGQAV 325
             Q      +            I Q   G+GKT    I +   ++            Q +
Sbjct: 209 PVQAKTFHHVYSGRD------LIAQARTGTGKTFSFAIPLIEKLQGELQDRKRGRPPQVL 262

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  +     T+     V    G  P  ++   +ER+ +G   I++GT   
Sbjct: 263 VLAPTRELANQVSKDFSDITKKLA--VACFYGGTPYGNQ---IERMRNG-IDILVGTPGR 316

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +D ++  KL        +L  VD+    G   +++   K          +   P+TL+ 
Sbjct: 317 IKDHLENGKLDLSKLKHVVLDEVDQMLDMGFADQVEDILKVAYKKD----SEDNPQTLLF 372

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEK 495
           ++     +  + +K       +  +I        I  E L +     ++A  I   I   
Sbjct: 373 SATCPHWVFNVAKKYMKATYEQVDLIGKKTQKTAITVEHLAIKCHWSQRAAVIGDVIRVY 432

Query: 496 KESNFR-----SVVERFNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                R        +    L ++         +HG +    +E  +  F+NG   +L+AT
Sbjct: 433 SGHQGRTIVFCETKKEAQELSQNSSIKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVAT 492

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +  +++         + +H+  GR GR      CI  Y            
Sbjct: 493 NVAARGLDIPEVDLVVQSCPPKDVESYIHR-SGRTGRAGRTGVCICFY------------ 539

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
                 ++ + +A+             ++Q    KF          +++ + KDA  +L 
Sbjct: 540 ----QHKEEYQLAQ-------------VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLD 582

Query: 669 QDP 671
             P
Sbjct: 583 SVP 585


>gi|270265065|ref|ZP_06193328.1| cold-shock DEAD box protein A [Serratia odorifera 4Rx13]
 gi|270040999|gb|EFA14100.1| cold-shock DEAD box protein A [Serratia odorifera 4Rx13]
          Length = 655

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 150/412 (36%), Gaps = 44/412 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++A    
Sbjct: 22  LTDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLHNLDASLKA 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++ T + V  + G      R     R       I++
Sbjct: 76  PQILVLAPTRELAVQVAEAMTDFSKHMTGVNVVALYGG----QRYDVQLRALRQGPQIVV 131

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   + +        L +AT 
Sbjct: 132 GTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTALFSATM 191

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + D    +I      R  I         + +    ++ + +E   A  I
Sbjct: 192 PEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTAQGMRKNEALVRFLEAEDFDAAII 251

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L     SS A+ +G M+   +E  ++  K+G   +LIAT
Sbjct: 252 FVRTKN-------ATLEVAEALERSGYSSAAL-NGDMNQALREQTLERLKDGRLDILIAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 304 DVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIE 362

Query: 609 SVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             +K T     I E +L   +   E  +         +   +  +++ +LL 
Sbjct: 363 RTMKLT-----IPEVELPNAELLGERRLAKFAAKVQQQLESSDLDMYRALLA 409


>gi|256018403|ref|ZP_05432268.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
 gi|332279457|ref|ZP_08391870.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
 gi|332101809|gb|EGJ05155.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
          Length = 457

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQVAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAVISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|284921218|emb|CBG34284.1| ATP-independent RNA helicase [Escherichia coli 042]
          Length = 457

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGNLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|222056385|ref|YP_002538747.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221565674|gb|ACM21646.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 443

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 73/368 (19%), Positives = 137/368 (37%), Gaps = 41/368 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ----AVIM 327
           +PT  Q  AI  +   M  K+ M        G+GKT   ++ +   +  G +    A+I+
Sbjct: 23  TPTPIQTQAIPPV---MDGKDVMGL---AQTGTGKTAAFVLPILQRLMEGPRGRVRALII 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA+Q +E I    Q T++    + G +    + + L         I++       
Sbjct: 77  APTRELAEQIHEAITVLGQQTRLKSATVYGGVNINPQIQKLRN----GVEIVVACPGRLL 132

Query: 388 DSI--------QYYKLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT--PIPRTL 435
           D +            L+L   D+    G     R  L Q       LL +AT  P  + L
Sbjct: 133 DHMGQRTIDLSHLEVLVLDEADQMFDMGFLPDIRRILGQLPKKRQTLLFSATMPPDIKRL 192

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L +    ++         +   I P+++  +    L+++    K++  +       
Sbjct: 193 AGEILHNPVTVQVGSTAPPVT-VNHAIYPVSQHLKTPLLLELLRHTDKQSVLVFT----- 246

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +   +R     E      A + G +S   +++ +D F++G+ ++L+AT +   GI
Sbjct: 247 ---KTKHRAKRVGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGSFQILVATDIAARGI 303

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL---- 611
           DV   S ++  +        +H++ GR GR         L     +    T    L    
Sbjct: 304 DVTQISHVVNYDITDKAETYIHRI-GRTGRASRSGDAFTLVTAEDTAMVRTIEKALGAPL 362

Query: 612 -KNTEDGF 618
            + T +GF
Sbjct: 363 ERRTVEGF 370


>gi|89890308|ref|ZP_01201818.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
 gi|89517223|gb|EAS19880.1| ATP-dependent RNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 425

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 81/405 (20%), Positives = 144/405 (35%), Gaps = 48/405 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QA 324
           PT  Q  +I  +L+          +     G+GKT    I +   +            +A
Sbjct: 24  PTPIQAQSIPVLLKGKD------LLGVAQTGTGKTAAFSIPILQHLYNSAPPKGRRSIKA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q  E  K Y + T I   +I G + QA +   L+        +++ T  
Sbjct: 78  LVVTPTRELAIQIDENFKAYAKYTDIRNTVIYGGVKQAQQVNRLKS----GIDVLVATPG 133

Query: 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDID 444
              D I    + L  ++        Q L +        +L +      ++L  ++     
Sbjct: 134 RLLDLINQGFITLKHIEYFVLDEADQMLDMGFIHDIKKLLKLLPH-ERQSLFFSATMPKT 192

Query: 445 ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK-------KE 497
           I +++ +  G     T I P     E +E+    +++  K   +   +E K         
Sbjct: 193 IVELSRQILGDFERVT-IAPEKTTAEKVEQQIYHVNKKNKTKLLIELLETKLLDSTLVFS 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                  +    L +    S AI HG  S   ++  + +FK G  + L+AT +   GID+
Sbjct: 252 RTKHGANKIVKDLEKAGIGSAAI-HGNKSQAARQRALGAFKEGKIQTLVATDIAARGIDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT--- 614
            + S ++  +  +   + +H++ GR GR       +                ++K     
Sbjct: 311 DELSYVVNYDLPNVAESYVHRI-GRTGRAGASGLAVSFCMLEERPFLKDIEKLIKQQIPV 369

Query: 615 -EDG-FLIAEED-----LK---------QRKEGEILGIKQSGMPK 643
            ED  F    ED     LK         QRK G   G  +SG  K
Sbjct: 370 IEDHDFPFKMEDAAEPSLKKQGQRGRRPQRKGGSNNGKSKSGGSK 414


>gi|326203304|ref|ZP_08193169.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325986562|gb|EGD47393.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 542

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 69/341 (20%), Positives = 124/341 (36%), Gaps = 34/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           +PT+ Q  AI  IL +         I+    GSGKT V  ++M    +    G   +I+ 
Sbjct: 25  TPTEVQSKAIPHILNNED------LIVMSKTGSGKTAVFGVSMLQMTDPEAEGPLGLILT 78

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q    I K  +  +     + G        + L++       I+ GT     D
Sbjct: 79  PARELAVQVDSDIHKMAKYLKHKTTAVYGQHNINVETQTLKK----GVSIVTGTPGRVFD 134

Query: 389 SIQYYKLI--------LVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATPIPRT--LV 436
            I +  L+        L   D     G   ++   +         LL +AT  P    + 
Sbjct: 135 HISHGSLVTKNIRFLVLDEADRMLDMGFLDQVVRIIKTLPKDRITLLFSATMPPEIHNIC 194

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              + +    +I  +      I  V   +N  ++  +  ++++ E  ++  I        
Sbjct: 195 SRYMQNPTTIEIESQTKTVDTIHQVYYRVNYNEKNTQLNRLLIVEKPESCMIF------- 247

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N ++ V+R  S       S   +HG +    + + +  FK G   +L+AT V   GI 
Sbjct: 248 -CNTKAAVDRVQSFLTKKGYSSQALHGDIPQSKRLNTIQQFKQGKFHILVATDVAARGIH 306

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +   S++I  +  +     +H++ GR GR         L  
Sbjct: 307 IEGLSLVINYDVPNDKDNYVHRI-GRTGRAGHDGRAFSLVT 346


>gi|308807515|ref|XP_003081068.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
 gi|116059530|emb|CAL55237.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
          Length = 1030

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 90/480 (18%), Positives = 177/480 (36%), Gaps = 50/480 (10%)

Query: 215 AKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFS-P 273
           +K+    + A+ R    EL   +     + K  K      ++       +++R   F  P
Sbjct: 297 SKEISSMTKAQTRALRAELDGIKCRGKKVPKPIKTWAHAGLSG---RIHELIRRCGFEKP 353

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAV 325
              Q  A+  I+           I     GSGKTL  ++ M   + A        G   +
Sbjct: 354 MPIQAQALPVIMSGRD------CIGIAKTGSGKTLAYILPMLRHINAQEPLKNGDGPIGM 407

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           IM P   L  Q  +  K+Y +        + G    A +   L+R     A I+  T   
Sbjct: 408 IMGPTRELVTQIGKEAKRYGKALGFNAVSVYGGSGIAAQIGELKR----GAEIVACTPGR 463

Query: 386 FQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
             D +           ++  +++DE  R                  +L    P  +T++ 
Sbjct: 464 MIDILTTGGGKITNLRRVTYIVLDEADRMFDMGFEPQIT------RILANLRPDRQTVMF 517

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++     +  +  + A   P++  I   + ++  I+++  +  E  +   +   + E  E
Sbjct: 518 SATFPHTMEALA-RAALENPVEIQIGGKSVVNSDIDQVVEIRPEEDRFLRVLELLGEWCE 576

Query: 498 S----NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                 F +  ++ +S  +    S      +HG     D+ S +  FK+  C +L+AT+V
Sbjct: 577 RGKIIIFVASQDKADSTFKELLKSGYPCLSLHGSKEQSDRHSTISDFKSDVCNILVATSV 636

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D  ++I  +  +     +H++ GR GR  +  + +        K +   +  
Sbjct: 637 AARGLDVKDLRLVINYDTPNHLEDYVHRV-GRTGRAGQKGTAVTFISEDEEKFAPDLVKA 695

Query: 611 LKNTE-----DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665
           LK+++     D   +A+E  ++RKEG +                  HD+L +  R  A+ 
Sbjct: 696 LKDSKQTVPRDVQRLADEFTRKRKEGLVGAAGSGFGGSGFKFDQGEHDALKKQKRDAARA 755


>gi|148549843|ref|YP_001269945.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148513901|gb|ABQ80761.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 443

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 131/344 (38%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
           +PT  Q  AI  +L           +     G+GKT    + +   +            +
Sbjct: 23  TPTPVQAKAIPAVLAGRD------LMAAAQTGTGKTAGFALPVLQRLALEGEKVASNSIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA+Q +  +++Y +N  +    + G +    +   L R       +++ T 
Sbjct: 77  ALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMRLRR----GVDLLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++++ ++  +++DE  R        L          +  A P  R  +L 
Sbjct: 133 GRLLDLFRQNAVKFNQVQTLVLDEADRM-------LDLGFAEELQSVYAALPRKRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  ++    A   P+   + P N     +++  V + + +KA   C  + +++  
Sbjct: 186 SATFSDQIRMLAGLALNDPLSIEVSPRNATATSVKQWLVPVDKKRKADLFCHLLRKQRWK 245

Query: 499 N---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F       + L E   +   +   IHG      ++  +DSFK    ++L+AT V  
Sbjct: 246 QVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            G+D+ D  +++  +        +H++ GR GR       I L 
Sbjct: 306 RGLDIDDLPLVVNLDLPIVAEDYVHRI-GRTGRAGNKGEAISLV 348


>gi|332184003|gb|AEE26257.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida 3523]
          Length = 445

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 138/373 (36%), Gaps = 41/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
            PT  Q  AI  +L+          +     G+GKT    + +   +    +A       
Sbjct: 23  KPTPIQAKAIPLVLKG------SDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQANRIKT 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I+ Y  NT I   ++ G +    +   L +       I+I T  
Sbjct: 77  LILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKLRK----GVEILIATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L   ++DE  R      +   +K    H LL       +TL+ ++
Sbjct: 133 RLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKK---IHKLL---PKKLQTLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I  +        P       +N   + I +    L +  K   +   I+++    
Sbjct: 187 TFSPEIKNLANDFLN-NPQSVSADVVNTTVKKITQKIYTLDKSTKINALISLIKDQDLHQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    + +    +   + + IHG  S   +   +  FK+    +L+AT +   
Sbjct: 246 VLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKEINVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     +I  +  +     +H++ GR GR  +    I L     S +    LS +++
Sbjct: 306 GIDIAQLPCVINLDLPNVAEDYVHRI-GRTGRAGQDGLAISLV----SADEVESLSNIEH 360

Query: 614 TEDGFLIAEEDLK 626
              G L+  E+L+
Sbjct: 361 LI-GHLLPREELE 372


>gi|298529095|ref|ZP_07016498.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510531|gb|EFI34434.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 367

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 130/355 (36%), Gaps = 24/355 (6%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
             ++ +I   I      +PT  QE AI   LQ       ++ + Q   G+GKT   ++  
Sbjct: 6   FELDHRIQAGIKACGYKNPTAIQEQAIPVGLQG----RDVMGLAQ--TGTGKTAAFVVPA 59

Query: 315 AAAVEAGGQ----AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
              +  G +     ++++P   LA+Q +EF     + T +    + G + ++ + + +  
Sbjct: 60  LQRLLQGKRGKPRVLVLSPTRELAEQTHEFFTALGRKTGLRCVSVYGGVSRSGQVQKIRS 119

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
                  I++       D  +   + L  V E        R+           ++    P
Sbjct: 120 ----GVEIVVACPGRLLDLARDRAVNLSQV-ETLILDESDRMLDMGFMPDIRSIMKMLPP 174

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + ++ ++    DI  + ++         V +   R  + I +    +    KA  +  
Sbjct: 175 KRQNMLFSATMPADIRTLADEILDDPAR--VQVNHERALDSISQCLYPVKRRPKAEMLIE 232

Query: 491 QIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            + EK++      +  + +  R              + G MS  +++ VM  FK G+  +
Sbjct: 233 LLREKQDGATLVFTRTKHMATRIAKRLSQAGFRARDLQGNMSQNNRQRVMKDFKRGSFNI 292

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           L+AT +   GIDV     ++  +      +  H++ GR GR +          P 
Sbjct: 293 LVATDIASRGIDVAGIGHVVNFDMPDTAESYTHRI-GRTGRADSCGDASTFVEPK 346


>gi|294657726|ref|XP_460025.2| DEHA2E16632p [Debaryomyces hansenii CBS767]
 gi|218511815|sp|Q6BP45|ROK1_DEBHA RecName: Full=ATP-dependent RNA helicase ROK1
 gi|199432904|emb|CAG88281.2| DEHA2E16632p [Debaryomyces hansenii]
          Length = 550

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 73/377 (19%), Positives = 148/377 (39%), Gaps = 39/377 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q+ AI   L+          I     GSGKTL  LI +   +          G +
Sbjct: 136 EPTPIQDEAIPISLEGRD------LIACAPTGSGKTLAFLIPLVQTILQSNPNVKNYGIR 189

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I++P   LA Q ++ +   T+  ++ + I++  +      K +      +  I++ T 
Sbjct: 190 GLIISPTNELAVQIFQELNTMTKGKKMKIGILSKQLANKINNKII---NSSKYDILVSTP 246

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQ-----RLKLTQKATAPHVLLMTATPIP- 432
               DSI+       K+  +++DE  +   Q         L+          M +  IP 
Sbjct: 247 LRLIDSIKNETISLSKVEQLVIDETDKLFDQGFVEQTDEILSNCTNTKLRKSMFSATIPS 306

Query: 433 --RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
               +  + + D     I  K A    I+  ++     +  +  ++ ++ +G+    I  
Sbjct: 307 GVEEMAQSIMKDPIRVIIGHKEAASNTIEQKLVFTGNEEGKLLAIRQMIQQGEFKPPIII 366

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
            ++    +        ++ L      ++ +IH   +   ++ V+  FK+G   +LI T V
Sbjct: 367 FLQSITRAKALFHELLYDRL------NVDVIHAERTPKQRDEVIKRFKSGDIWVLITTDV 420

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           I  G+D    +++I  +      A +H++ GR GRG +    +  +     K     ++V
Sbjct: 421 IARGVDFKGVNLVINYDVPQSAQAYVHRI-GRTGRGGKAGKAVTFFTKEDDKAVKPIINV 479

Query: 611 LKNT--EDGFLIAEEDL 625
           +K +  E G+    ED+
Sbjct: 480 MKQSGCESGYSGWLEDM 496


>gi|74835178|dbj|BAE44472.1| Vasa [Botryllus primigenus]
          Length = 687

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 70/387 (18%), Positives = 134/387 (34%), Gaps = 58/387 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------E 319
            PT  Q+ +I  I            +     GSGKT   L+ + A +            +
Sbjct: 253 KPTPVQKYSIPIINAGRD------LMACAQTGSGKTAAFLLPVLAGIFRSGLKADSFSEK 306

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              QA+++ P   L  Q +   +K+ +N+ +   +  G      + + L R  +    I+
Sbjct: 307 QTPQAIVVGPTRELVSQIFTEARKFARNSVVQPVVAYGGTSVQSQLRDLSRGCN----IL 362

Query: 380 IGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKL------TQKATAPHVLL 425
           I T     D I   K+    V        D     G +  ++            + H L+
Sbjct: 363 IATPGRLLDFINRGKVGCDCVEYLILDEADRMLDMGFEPEIRKLLGSPGMPDKNSRHTLM 422

Query: 426 MTAT-PIPRTLVLTSLGDIDISKIT--EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
            +AT P     +       D   +T          +   ++ +   D+  + +++++   
Sbjct: 423 FSATFPDEIQKLAHEFMREDFLFLTVGRVGGACSDVTQTLLQVENADKREKLMELLVDVP 482

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           + A      ++ K+ ++F +       L          IHG     ++E  +  FK G C
Sbjct: 483 ETAARTLVFVDTKRNADFLATFLSQEGL------PTTSIHGDRQQREREIALTDFKKGKC 536

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP--- 599
            +LIAT+V   G+D+     +I  +        +H++ GR GR   + S    Y      
Sbjct: 537 PILIATSVAARGLDIPKVEHVINYDLPSEIDEYVHRI-GRTGRCGNLGSATSFYSDDKNA 595

Query: 600 ---------LSKNSYTRLSVLKNTEDG 617
                    LS         L++  +G
Sbjct: 596 ALARSLVKVLSDAQQEVPDWLESCAEG 622


>gi|6320224|ref|NP_010304.1| Fal1p [Saccharomyces cerevisiae S288c]
 gi|2500524|sp|Q12099|FAL1_YEAST RecName: Full=ATP-dependent RNA helicase FAL1; AltName:
           Full=Translation initiation factor four A-like protein 1
 gi|160385737|sp|A6ZXY5|FAL1_YEAS7 RecName: Full=ATP-dependent RNA helicase FAL1; AltName:
           Full=Translation initiation factor four A-like protein 1
 gi|840874|emb|CAA89846.1| unknown [Saccharomyces cerevisiae]
 gi|1216228|emb|CAA65213.1| orf:PZC399 [Saccharomyces cerevisiae]
 gi|1431450|emb|CAA98842.1| FAL1 [Saccharomyces cerevisiae]
 gi|51830220|gb|AAU09684.1| YDR021W [Saccharomyces cerevisiae]
 gi|151942009|gb|EDN60365.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|256273263|gb|EEU08206.1| Fal1p [Saccharomyces cerevisiae JAY291]
 gi|285811043|tpg|DAA11867.1| TPA: Fal1p [Saccharomyces cerevisiae S288c]
          Length = 399

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 152/395 (38%), Gaps = 48/395 (12%)

Query: 228 LAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQD 287
           +++D     ++     +K         +N++  + + I      +P+  Q  AI  I+  
Sbjct: 1   MSFDREEDQKLKFKTSKKLKVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG 60

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMAPIGILAQQHYEFIKKY 344
                    I Q   G+GKT    I +  A++      QA+I++P   LA Q  + +K  
Sbjct: 61  KDV------IAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNL 114

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY-----YKLILVI 399
                +    ITG          L+++       + GT     D I+        + +++
Sbjct: 115 GDYMNVNAFAITGGKTLKD---DLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLV 171

Query: 400 VDEQHRF-----GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAG 454
           +DE         G +Q++         +          + +V+++  + DI ++T K   
Sbjct: 172 LDEADELLSETLGFKQQIYDIFAKLPKNC---------QVVVVSATMNKDILEVTRKFMN 222

Query: 455 RKPIKTVIIPINRIDEV-IERLKVVLSEGKKAYWICPQIEEKKE----------SNFRSV 503
             P+K ++    + DE+ +E +K  +    K  W    + +  +           N +  
Sbjct: 223 -DPVKILV----KRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKK 277

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
           V+  +        ++  +HG M   +++ VM+ F+ G  ++LI+T V   GIDV   S++
Sbjct: 278 VDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLV 337

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           I  +        +H++ GR GR       I     
Sbjct: 338 INYDLPEIIENYIHRI-GRSGRFGRKGVAINFITK 371


>gi|312218576|emb|CBX98521.1| hypothetical protein [Leptosphaeria maculans]
          Length = 679

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 62/377 (16%), Positives = 134/377 (35%), Gaps = 51/377 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA--------------- 317
           PT  Q+ +I  +   M  ++ M        GSGKT   L  + A                
Sbjct: 216 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILAQNFVNGPSPPPQSQAG 269

Query: 318 -----VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                 +A   ++++AP   L  Q +E  +K+   + +   ++ G      + + +ER  
Sbjct: 270 GYGRQRKAYPTSLVLAPTRELVSQIFEEARKFAYRSWVRPCVVYGGADIGSQLRQIER-- 327

Query: 373 HGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
                +++ T     D I+  +        L+L   D     G + +++   +       
Sbjct: 328 --GCDLLVATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEPQIRRIVEGED---- 381

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            M  T   +TL+ ++    DI  +  +   ++ I   +  +    E I +    + +  K
Sbjct: 382 -MPPTAARQTLMFSATFPRDIQMLA-RDFLKEYIFLSVGRVGSTSENITQKVEYVEDADK 439

Query: 485 AYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
              +   +              + + +  +    +       IHG  +  ++E  ++ F+
Sbjct: 440 RSVLLDILHTHGAGLTLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFR 499

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           NG C +L+AT V   G+D+ +   ++  +        +H++ GR GR          ++ 
Sbjct: 500 NGRCPILVATAVAARGLDIPNVKHVVNYDLPTDIDDYVHRI-GRTGRAGNTGIATAFFNR 558

Query: 599 PLSKNSYTRLSVLKNTE 615
                    L +LK   
Sbjct: 559 GNRGVVRDLLDLLKEAN 575


>gi|254429992|ref|ZP_05043699.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
 gi|196196161|gb|EDX91120.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
          Length = 459

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 79/449 (17%), Positives = 156/449 (34%), Gaps = 69/449 (15%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + + + T  Q  ++  +L+          I Q   GSGKT    + +   +     G
Sbjct: 19  LNTLGYATMTPVQAQSLPFVLKGHDV------IAQASTGSGKTAAFGLGLLHPLNPRYYG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    I++  +    I V  + G  P   +  +LE      A I++
Sbjct: 73  CQALVLCPTRELADQVAGEIRRLARGPGNIKVLTLCGGQPIGPQIGSLEH----GAQIVV 128

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT       +            L+L   D     G    +   + Q  +    LL +AT 
Sbjct: 129 GTPGRVLKHLSKGTLSLEGLNTLVLDEADRMLDMGFYDSIAEVIRQTPSRRQTLLFSATY 188

Query: 431 I--PRTLVLTSLGDIDISKITEKPAGRKPIKTV--IIPINRIDEVIERLKVVLSEGKKAY 486
               + L  T + +    ++       +  +    + P  R + V   +          +
Sbjct: 189 PAGIKQLAETFMNNPQHVEVEALHDNSQIEQRYYEVDPAEREEAVARAIACFRPVSCVVF 248

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
            +            +   +  N L      S  +++  +   +++ V+  F N +  +L+
Sbjct: 249 CV----------TKKQCQDVVNQLCRQGM-SAMVLNSDLEQRERDEVLTLFANRSLSVLV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ +  ++I     H     +H++ GR GR  E    I L  P  S+ +  
Sbjct: 298 ATDVAARGLDIDNLDMVINAELSHEPQTHIHRV-GRTGRAGEKGLAINLVAPRESRRAMA 356

Query: 607 RLSVLKNTEDGFLIAEEDLKQR----------------------KEGEILG--IKQSGMP 642
              +     +   ++   LK R                      + G+ILG     +G+ 
Sbjct: 357 IEELQGAPLNWHPVSS--LKPREGDTLQPPTITLCIGAGRKDKLRPGDILGALTGDAGIA 414

Query: 643 KFLIAQPEL--HDSLLEIARKDAKHILTQ 669
              + +  +  + + + I R  A   L +
Sbjct: 415 GNKVGKITVTDYQAYVAIDRDSADLALER 443


>gi|57899404|dbj|BAD88051.1| putative ATP-dependent RNA helicase DB10 [Oryza sativa Japonica
           Group]
 gi|215694706|dbj|BAG89897.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 583

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 119/312 (38%), Gaps = 31/312 (9%)

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
           +G   +++AP   LA Q  E   K+ ++++I    + G  P+  + + L+R       ++
Sbjct: 12  SGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLDR----GVDVV 67

Query: 380 IGTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT 429
           + T     D ++  +        L+L   D     G   Q R  + +       L+ TAT
Sbjct: 68  VATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTAT 127

Query: 430 PIPRTL-----VLTSLGDIDISKITEKPAGRKPIKTV-IIPINRIDEVIERLKVVLSEGK 483
                      +L     + I  + E  A     + V +I  +     +E++      G 
Sbjct: 128 WPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLEQILRSQDSGS 187

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           K    C           R   +   +L   F +S   IHG  S  ++E V+  F++G   
Sbjct: 188 KVLIFCTT--------KRMCDQLARTLTRQFGASA--IHGDKSQSEREKVLSHFRSGRSP 237

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   G+D+ D  ++I  +        +H++ GR GR          +    SK 
Sbjct: 238 ILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRI-GRTGRAGATGVAYTFFCDQDSKY 296

Query: 604 SYTRLSVLKNTE 615
           +   + +L+   
Sbjct: 297 AADLIKILEGAN 308


>gi|327313656|ref|YP_004329093.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
 gi|326944744|gb|AEA20629.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
          Length = 572

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 133/373 (35%), Gaps = 44/373 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG------QAVIM 327
           T  QE  I +IL+          +     G+GKT   L+ + + +  GG        VIM
Sbjct: 25  TPVQEKCIPEILKG------NDVLGVAQTGTGKTAAYLLPVLSKLADGGYPESAINCVIM 78

Query: 328 APIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +P   LAQQ  + ++ +      +    + G        + L+ ++ G A ++I T   F
Sbjct: 79  SPTRELAQQIDQAMQGFAYYLDGVSCVAVYGGNDGNRYDQELKSLSLG-ADVVIATPGRF 137

Query: 387 QDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLV 436
              I    +        IL   D     G  + +    K    +   ++ +AT   +   
Sbjct: 138 ISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLPASCQTIMFSATMPKKIEE 197

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           L      +  +I              + +++  E I ++  V  E +K   I    +   
Sbjct: 198 LAKTLLKNPVEIK-------------LAVSKPAEKIHQMAYVCYETQKMGIIKDIFKAGD 244

Query: 497 ESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +  V++  +       +   +H  +    +  VM  FK+G   +L+AT +
Sbjct: 245 LKRVIIFSGSKQKVKQIAASLGRKHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDI 304

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           +  GID+ D +++I  +  H     +H++ GR  R +     I   +           S 
Sbjct: 305 VARGIDIDDIAMVINYDVPHDAEDYVHRI-GRTARADRDGKAITFVNVDDIYYFKQIESF 363

Query: 611 LKNTEDGFLIAEE 623
           L    +   + EE
Sbjct: 364 LDKEVEKIPLPEE 376


>gi|193222330|emb|CAL61847.2| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 464

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 83/461 (18%), Positives = 165/461 (35%), Gaps = 66/461 (14%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + +   T  Q  ++  ILQ          I Q   GSGKT    I M   +      
Sbjct: 19  LDALGYREMTSIQAQSLPVILQ------LRDLIAQAKTGSGKTAAFGIGMLQKLNPTWFA 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++ P   LA Q    +++  +    I +  + G  P   +  +LE      AHI++
Sbjct: 73  IQGLVICPTRELADQVSNELRRLARFADNIKILTLCGGAPMRPQIASLEH----GAHIVV 128

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    +D I            L+L   D     G  + +            +++A P  
Sbjct: 129 GTPGRLRDHISRNTINLSTVQTLVLDEADRMVDMGFYEEIA----------GIVSACPER 178

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R  +L S    D  +       R P++  +      D  IE+    +    +   +   +
Sbjct: 179 RQTLLFSATYPDDIRKASAEFLRDPVEVKV-EAQHDDSQIEQRFYEVGYDDRNAAVATLL 237

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +  +        N +       +       S   ++G +   +++ ++  F N +C +L+
Sbjct: 238 KHYRPVSTLAFCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+     +I  +        +H++ GR GRG++    + L  P   K    
Sbjct: 298 ATDVAARGLDIQSLGAVINVDVSKDTEVHIHRI-GRTGRGQDKGLALSLCAPNEKKWVKL 356

Query: 607 RLSVLKNTEDGFLI--AE----EDL--------------KQRKEGEILG--IKQSGMPKF 644
                +     F +  AE     DL               + + G++LG      G+ K 
Sbjct: 357 IEEYQQKPAQWFDLKSAEPAEGGDLHAPMVTLCIMGGKKDKLRPGDLLGALTGDVGLTKD 416

Query: 645 LIAQPELHDSLLEIA--RKDAKHILTQDPDLTSVRGQSIRI 683
            + +  + + +  +A  R+ A        +  +++G++ ++
Sbjct: 417 QVGKINVFEFMTYVALDRRAADKAYASLSN-GNIKGRNFKM 456


>gi|113954719|ref|YP_730508.1| DNA and RNA helicase [Synechococcus sp. CC9311]
 gi|113882070|gb|ABI47028.1| DNA and RNA helicase [Synechococcus sp. CC9311]
          Length = 426

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 130/346 (37%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------A 324
           +P+  Q  AI  ++           +     G+GKT    + M   +  G +       A
Sbjct: 37  APSPIQLQAIPAVISGRDV------MAAAQTGTGKTAGFTLPMLERLNHGARPGRLQIRA 90

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +++ P   LA Q    +++Y++  Q+  +++ G +    + + L++       +++ T  
Sbjct: 91  LVLTPTRELAAQVLASVREYSKYLQLTSDVVFGGVKINPQIQRLQK----GVDVLVATPG 146

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++ ++  +++DE  R      +           ++       +TL+ ++
Sbjct: 147 RLLDLLQQGAVRFDRVEFLVLDEADRMLDMGFIHDI------RRVISRLPDRRQTLMFSA 200

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
                I K+        P++  + P N+    +E++       +K   +   I   +   
Sbjct: 201 TFSAPIRKLATGLLDH-PVQIQVAPANQTVRSVEQVVHPCDMARKVDLLSHLIRSGEWLQ 259

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    R            A IHG  S   +   +  FK+G+ ++L+AT +   
Sbjct: 260 VLVFSRTKHGANRVVDRLSQQGLLAAAIHGNKSQGARTRALQGFKDGSVRVLVATDIAAR 319

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GID+     ++  +  +     +H++ GR GR  E    I L    
Sbjct: 320 GIDIQQLPHVVNLDLPNVAEDYVHRI-GRTGRAGETGHAISLVAAE 364


>gi|289740253|gb|ADD18874.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 692

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 77/406 (18%), Positives = 147/406 (36%), Gaps = 52/406 (12%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKT 307
                 P  ++    Q        +P+  Q  A   +L+       M+ I Q   G+GKT
Sbjct: 279 HCFAPYPDLLDEVTKQGFQ-----TPSPIQSQAWPILLKGED----MIGIAQ--TGTGKT 327

Query: 308 LVALIAMAAAVE---------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           L  L+     +E          G   +I+AP   LA Q  + + KY+    I    I G 
Sbjct: 328 LAFLLPALIHIEYQSIPRSQRGGPNVLILAPTRELALQIEKEVNKYS-FRGIKAVCIYGG 386

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQ 410
               +R   ++ +  G   +II T     D +Q           L+L   D     G + 
Sbjct: 387 ---GNRNDQIQNVGRG-VEVIICTPGRLNDLVQANVIDVTTVTYLVLDEADRMLDMGFEP 442

Query: 411 RLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RID 469
           ++           +L+   P  +T++ ++     + ++ +      PI+  +  ++    
Sbjct: 443 QI---------RKVLLDIRPDRQTIMTSATWPPGVRRLAQSYM-SNPIQVCVGSLDLAAT 492

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESN----FRSVVERFNSLHEHFTSS---IAIIH 522
             + ++  V+ E  K Y I   I+  +  +    F     R + L    T        IH
Sbjct: 493 HSVRQVVEVVEEDDKFYMIKKFIKNMQPDDKLIVFCGKKVRADDLSSDLTLDGFLCQAIH 552

Query: 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGR 582
           G     D+E  +    +G  ++LIAT V   G+D+ D + +I  +        +H++ GR
Sbjct: 553 GSRDQADREQAIADITSGDVRILIATDVASRGLDIDDITHVINFDFPRNIEEYVHRV-GR 611

Query: 583 VGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
            GR     + I          +   + +++  +        D+ +R
Sbjct: 612 TGRAGRTGTSISYLTRSDWAMAPELIKIMEEADQQVPDELIDMAER 657


>gi|238755161|ref|ZP_04616507.1| DEAD/DEAH box helicase domain protein [Yersinia ruckeri ATCC 29473]
 gi|238706608|gb|EEP98979.1| DEAD/DEAH box helicase domain protein [Yersinia ruckeri ATCC 29473]
          Length = 656

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 135/370 (36%), Gaps = 43/370 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 22  LTDLGYEKPSPIQLECIPHLLNGRDV------LGMAQTGSGKTAAFGLPLLHNIDPTLKA 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++ + + V  + G      R     R       +++
Sbjct: 76  PQVLVLAPTRELAVQVAEALSSFSKHISGVNVVALYGG----QRYDVQLRALRQGPQVVV 131

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++   L        +L   DE  R G  + +           ++       
Sbjct: 132 GTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDV---------ETIMAQIPAEH 182

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +T + ++     I +IT +   + P +  I   N     I +    +  G +      + 
Sbjct: 183 QTALFSATMPEAIRRITRRFM-KDPQEVRIQSSNTTRPDISQSYWKVGGGYRKNEALVRF 241

Query: 493 EEKKESNFRSVV--------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
            E ++ +   +         E   +L     SS A+ +G M+   +E  ++  ++G   +
Sbjct: 242 LESEDFDAAIIFVRTKNATLEVAETLERSGYSSAAL-NGDMNQSLREQTLERLRDGRLDI 300

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 301 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 359

Query: 605 YTRLSVLKNT 614
                 +K T
Sbjct: 360 QNIERTMKLT 369


>gi|254515124|ref|ZP_05127185.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
 gi|219677367|gb|EED33732.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
          Length = 444

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 119/343 (34%), Gaps = 39/343 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--------AV 325
           T  Q+ AI  +LQ          +     G+GKT    + +   +++  Q         +
Sbjct: 25  TPIQQKAIPLVLQGHD------LLAGAQTGTGKTAGFTLPLLQRLQSKYQDVQKSFPKVL 78

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q +E ++ Y +       +I G +    +++ L +       I++ T   
Sbjct: 79  VLTPTRELAAQVHESVRDYGRYLPFRSAVIFGGVSINPQKQKLIK----GVDIVVATPGR 134

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRT- 434
             D +Q           L+L   D     G     R  +         LL +AT      
Sbjct: 135 LLDHVQQRSIDLSRIEILVLDEADRMLDMGFIHDIRRVMKVIPKKRQTLLFSATFSSEIK 194

Query: 435 -LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L    L   +  ++T +      +  ++ P+++  +     + +     +   I  +  
Sbjct: 195 KLASEFLEQPEQIQVTPQNTATTLVSQLVYPVDKNRKRELLSQQIGEGNWQQVLIFTRT- 253

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +    +     +    S A IHG  S   +   +  FK GT + L+AT +   
Sbjct: 254 -------KHGANKLAEQLDKDGISAAAIHGNKSQGARTRALGDFKAGTIRALVATDIAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           GID+     ++     +     +H++ GR  R  +    I L 
Sbjct: 307 GIDIDKLPHVVNFELPNVPEDYIHRI-GRTARAGQQGHAISLV 348


>gi|313500721|gb|ADR62087.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida BIRD-1]
          Length = 443

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 131/344 (38%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
           +PT  Q  AI  +L           +     G+GKT    + +   +            +
Sbjct: 23  TPTPVQAKAIPAVLAGRD------LMAAAQTGTGKTAGFALPVLQRLALEGEKVASNSIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA+Q +  +++Y +N  +    + G +    +   L R       +++ T 
Sbjct: 77  ALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMRLRR----GVDLLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++++ ++  +++DE  R        L          +  A P  R  +L 
Sbjct: 133 GRLLDLFRQNAVKFNQVQTLVLDEADRM-------LDLGFAEELQSVYAALPRKRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  ++    A   P+   + P N     +++  V + + +KA   C  + +++  
Sbjct: 186 SATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLLRKQRWK 245

Query: 499 N---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F       + L E   +   +   IHG      ++  +DSFK    ++L+AT V  
Sbjct: 246 QVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            G+D+ D  +++  +        +H++ GR GR       I L 
Sbjct: 306 RGLDIDDLPLVVNLDLPIVAEDYVHRI-GRTGRAGNKGEAISLV 348


>gi|253572829|ref|ZP_04850228.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385203|ref|ZP_06994762.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
 gi|251837561|gb|EES65653.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262347|gb|EFI05212.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
          Length = 374

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 140/362 (38%), Gaps = 41/362 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQA 324
           PT  QE AI   L       +   +     G+GKT    I +   +         +G +A
Sbjct: 24  PTPIQEKAIPVALA------KKDILGCAQTGTGKTASFAIPIIQHLHLNKGEGKRSGIKA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I+ Y++ T+I   +I G + Q  +   L +       I++ T  
Sbjct: 78  LILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDMLHK----GIDILVATPG 133

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I+   +   ++DE  R      +   ++       ++   P  +  +  S
Sbjct: 134 RLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKR-------ILPKLPKEKQTLFFS 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
               D          + P+K  + P +   + I++L   + + +K+  +   +++ ++  
Sbjct: 187 ATMPDTIIALTNSLLKNPLKIYVTPKSSTVDSIKQLVYFVEKKEKSLLLISILQKSEDRS 246

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   ++   +          IHG  S   ++S + +FK+G  ++++AT +   
Sbjct: 247 VLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIASR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+ +  ++I  +        +H++ GR GR       +       S+    +++ ++ 
Sbjct: 307 GIDINELPLVINYDLPDVPETYVHRI-GRTGRAGNAGMALTFC----SQEERKQINDIQK 361

Query: 614 TE 615
             
Sbjct: 362 LT 363


>gi|257790993|ref|YP_003181599.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|325830863|ref|ZP_08164247.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
 gi|257474890|gb|ACV55210.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
 gi|325487270|gb|EGC89713.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
          Length = 506

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 123/364 (33%), Gaps = 37/364 (10%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQ 323
             + +  PT  QE AI   L+          I     G+GKT    +     +    GGQ
Sbjct: 18  ARLGYEAPTPVQEQAIPLALEGRD------LIAAAKTGTGKTAAFSLPSLDRLGHAKGGQ 71

Query: 324 A---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               +++ P   LAQQ  E       +T   +  + G +    +   L+        I+I
Sbjct: 72  GPLMLVVTPTRELAQQIGEVCTAIAASTHHRILTVVGGLSYTPQINKLKH----GVDILI 127

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQ--QRLKLTQKATAPHVLLMTAT- 429
            T     D ++           L+L   D     G     +  +     +   LL +AT 
Sbjct: 128 ATPGRLVDLMEQGAVRLGDVEVLVLDEADRMLDMGFWPAMKKIIGATPASRQTLLFSATI 187

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +  V   L D    +I  K      ++  I+ + +  +      V+  +G     +
Sbjct: 188 DASIKNSVGKLLHDPAFVEIAHKGETADTVEQYIVHVAQTLKPALLKAVLAEKGSDRVIV 247

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +   + +S  R          +    +   IH   S   +   +D+F  G   +L+AT
Sbjct: 248 FARTRSRADSTCRR--------LKRAGYTAEAIHSDRSQAQRRRALDNFAAGKTGVLVAT 299

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V+  GIDV +   ++  +        +H++ GR GR       +    P  +       
Sbjct: 300 DVLARGIDVEEVDYVVNYDLPTQPEDYVHRI-GRTGRAGAAGFAVSFVSPETADALRDIE 358

Query: 609 SVLK 612
            ++K
Sbjct: 359 KLIK 362


>gi|182412765|ref|YP_001817831.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177839979|gb|ACB74231.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 409

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 131/366 (35%), Gaps = 35/366 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----GQAVIM 327
            PT  Q  AI  +L           I     G+GKT    + +   + A      + +++
Sbjct: 23  DPTPIQLRAIPVVLGG------GDLIGSAQTGTGKTAAFALPILTRLGAHAARAPRVLVL 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
            P   LA Q     + + + T +    + G +    +R  L+R       +I+ T     
Sbjct: 77  EPTRELAAQVETAFRDFARFTDLRTVAVFGGVGYGLQRTELKR----GVDVIVATPGRLM 132

Query: 388 DSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT--PIPRTL 435
           D +            L+L  VD     G     +  + +       L  +AT  P  + +
Sbjct: 133 DYLHDRTINLQGVEILVLDEVDRMLDMGFLPVVKDIIQRCPRQRQTLFFSATVPPEIQAV 192

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
              +L +    ++    +  + +K  + P+   D+  E L+ +L+       +       
Sbjct: 193 ASFALRNPTRVEVGVNRSVNESVKHALYPVA-ADQKFELLEALLARTDFDSVLVF----- 246

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
             S  +   ++     +    S+A++H   S   +   +  FK+G  ++++AT +   GI
Sbjct: 247 --SRTKHGADKIARKLKAANHSVAVLHANRSQNQRIEALAGFKSGKYEIMVATDIAARGI 304

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           DV   S +I  +        +H++ GR GR + +     L  P  + +       +    
Sbjct: 305 DVAGVSHVINYDVPEKPEDYVHRI-GRTGRAQAVGDAFTLVTPENAHDVRDIERFIGQKI 363

Query: 616 DGFLIA 621
               +A
Sbjct: 364 PELRLA 369


>gi|119470499|ref|ZP_01613202.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
 gi|119446200|gb|EAW27477.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
          Length = 408

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 129/380 (33%), Gaps = 40/380 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ K+   I +     PT  Q+ AI + LQ          +     G+GKT   LI  
Sbjct: 6   FDLDTKLLDAIDKMGYEKPTSIQQQAIPEALQGRD------ILASAPTGTGKTAAFLIPA 59

Query: 315 AAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              +    +        +IM P   LA Q +E  +   + T + + ++TG +     ++ 
Sbjct: 60  IQYLLDFPRREPGFARVLIMTPTRELAYQIHEQCELLAKRTHLKIGVVTGGINYGTHKEI 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKAT 419
            E+       ++I T     + ++           LI+   D     G ++ +       
Sbjct: 120 FEKNN----DVLIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEA 175

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
                          L   +L    + +  E       +           ++ + + +  
Sbjct: 176 KNRRQCF--------LFSATLEGDSVERFAETTLNDPALLEAESSRKEKAKIHQWVHLAD 227

Query: 480 SEGKKAYWICPQI---EEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESV 533
               K   +   +   +  K   F    ER  +L    T+     A + G M    +   
Sbjct: 228 DYHHKLELLVNTLNGPDVSKAIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKA 287

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M++F +G  K+LIAT V   GIDV D S +I  +        +H++ GR GR  +    I
Sbjct: 288 MENFHSGRTKILIATDVAARGIDVSDISHVINFDMPRTADVYVHRI-GRTGRAGKKGIAI 346

Query: 594 LLYHPPLSKNSYTRLSVLKN 613
            L         Y     ++ 
Sbjct: 347 SLVEAHDIGILYKVERYIEQ 366


>gi|226468128|emb|CAX76291.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
          Length = 392

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 133/349 (38%), Gaps = 34/349 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           + +  +  P+  Q+ AIK  ++          I Q   G+GKT    I++   ++     
Sbjct: 34  IYSFGYEKPSAIQQRAIKPSVEGRDV------IAQAQSGTGKTATFAISILQRIDVSSNT 87

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++ P   LA+Q    +++      +      G    +     L++      H+++G
Sbjct: 88  CQALVLVPTRELARQIQTVVQRIGSYLNVRCHTCIGGTRMSEDVACLQQGQ----HVVVG 143

Query: 382 THALFQDSIQYY-----KLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTATPI 431
           T     D +         + + ++DE  +        Q +        +  ++L++AT  
Sbjct: 144 TPGRVIDMMNRSILATSNIKIFVLDEADQMLGRGFEPQIKEIYKYLPESAQIMLLSATMP 203

Query: 432 PR--TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            +  T+    + D     I ++      IK   I +++ +  +E L  +       Y + 
Sbjct: 204 KQMLTIARGIMQDPVQILIKKEELTLDGIKQFYINVSKEEYKLETLMDL-------YKVM 256

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
              +     N        +    +    ++ I+  M    ++ VM+ +++G  ++L++T 
Sbjct: 257 NLSQVVIFVNSVRKASYLSEELANRNFQVSCINSDMEQEKRDRVMEEYRSGRSRILLSTD 316

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           V+  GIDV   S+++  +        +H++  R GR     + I     
Sbjct: 317 VLARGIDVQQVSLVVNYDLPGDRETYIHRIC-RGGRFGRKGTAINFITD 364


>gi|161618112|ref|YP_001591999.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella canis ATCC
           23365]
 gi|260567233|ref|ZP_05837703.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|161334923|gb|ABX61228.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella canis ATCC
           23365]
 gi|260156751|gb|EEW91831.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
          Length = 626

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 148/365 (40%), Gaps = 46/365 (12%)

Query: 272 SPTKSQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGG 322
           + T  Q + +  + L           ++    GSGKT+   +AMA  +        +AG 
Sbjct: 22  TLTAVQNAVLAPETLAS-------DLLVSAQTGSGKTVAFGLAMANTILEDELRFGDAGA 74

Query: 323 Q-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LA Q    ++    +T   +    G M     R+ALER     +HI++G
Sbjct: 75  PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GSHIVVG 130

Query: 382 THALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D I        Q   ++L   DE    G ++ L+           L  A    R
Sbjct: 131 TPRRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFI---------LGEAPEDRR 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I+++ ++        TV    ++  + I+ + + +   ++ + I   + 
Sbjct: 182 TLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHAD-IDYVAMPVPPHERDHAIINTLL 240

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                N       R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +        LH+  GR GR     +C+L+      +++   
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGTCVLVVPFSRRRSAERL 359

Query: 608 LSVLK 612
           L + K
Sbjct: 360 LHMAK 364


>gi|326474132|gb|EGD98141.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           tonsurans CBS 112818]
          Length = 809

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 135/388 (34%), Gaps = 55/388 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            P+  Q  +I   LQ+         I     GSGKT   L+ +   +             
Sbjct: 391 DPSPIQRVSIPIALQNRD------LIGVAVTGSGKTAAFLLPLLVYISSLPRLDEFEWRR 444

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G  A+I+AP   LAQQ      K+       V  I G      +   L       A I
Sbjct: 445 NDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEEQAYNLRN----GAEI 500

Query: 379 IIGTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLT--------------- 415
           II T     D I+   L+L           D     G ++ +                  
Sbjct: 501 IIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDTEE 560

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            + A A    +       +T++ T+     + +I  K   R  I T+      +D V +R
Sbjct: 561 AENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAVDTVEQR 620

Query: 475 LKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           ++ V  E K+   +   +  ++         N +   +      +H   S   +HG  + 
Sbjct: 621 VEFVAGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMGFSAVTLHGSKTQ 680

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +E+ + S +NG+  +L+AT +   GIDV D S+++  N      +  H++ GR GR  
Sbjct: 681 EQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRI-GRTGRAG 739

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +    I       +   Y    +L  + 
Sbjct: 740 KSGVAITFLGNEDNDVLYDLKQMLMKSS 767


>gi|283833909|ref|ZP_06353650.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
 gi|291070581|gb|EFE08690.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
          Length = 447

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 131/362 (36%), Gaps = 38/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+ AI  +L+          +     G+GKT    + +   +             
Sbjct: 23  EPTPIQQQAIPAVLEGRD------LMASAQTGTGKTAGFTLPLLQHLVTHQPHGKSRRPV 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E ++ Y++   I   ++ G +    +   L     G   ++I T
Sbjct: 77  RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLR----GGVDVLIAT 132

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D     +++  ++ ++++DE  R      +           +L       + L+ 
Sbjct: 133 PGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDI------RRVLAKLPAKRQNLLF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    DI  + EK   R P++  +   N   E + +    + + +K   +   I +   
Sbjct: 187 SATFSDDIKSLAEK-LLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNW 245

Query: 498 SN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F       N L E         A IHG  S   +   +  FK+G  ++L+AT + 
Sbjct: 246 QQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ +   ++     +     +H++ GR GR       + L      K       +L
Sbjct: 306 ARGLDIEELPHVVNYELPNVPEDYVHRI-GRTGRAAATGEALSLVCVDEHKLLRDIEKLL 364

Query: 612 KN 613
           K 
Sbjct: 365 KK 366


>gi|281201459|gb|EFA75669.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 751

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 74/380 (19%), Positives = 136/380 (35%), Gaps = 45/380 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM------------AAAVE 319
            PT  Q+SA+  I   M  ++ M        GSGKT   L  +             AA  
Sbjct: 307 KPTPVQKSALPII---MKGRDLM---ACAQTGSGKTAAFLFPIISGILLDGAPEPLAAYR 360

Query: 320 AG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
            G       +A+++AP   LA Q Y+   K++  + +   ++ G    +H+   L+R   
Sbjct: 361 PGVPRPVHPRALVLAPTRELALQIYDEASKFSYGSPVTSVVVYGGAEISHQIAELDR--- 417

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               I++ T     D +   ++ L  V     DE  R          ++    +   M  
Sbjct: 418 -GCDILVATTGRLVDLLSRGRVSLAHVKYLVLDEADRMLDMGFEPQIRQIVVDN--DMPG 474

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV--IIPINRIDEVIERLKVVLSEGKKAY 486
               +TL+ ++     I  +            V  I     I + IE ++          
Sbjct: 475 NRDRQTLMFSATFPKPIQNLASDFLNNYIFLKVGVIGTTQNITQRIEYVQDDEKNSYLLD 534

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCK 543
           ++     +     F       +SL  +      +   IHG +S  ++ES ++SF+     
Sbjct: 535 FLSTLKSDGLTLIFVETKRLCDSLTHYLNTKGFASTCIHGDLSQYERESALNSFRTNQTP 594

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
            L+AT V   G+ + +   +I  +        +H++ GR GR  +    I  Y+      
Sbjct: 595 YLVATDVASRGLHIPNVLYVINFDLPTDIHVYVHRI-GRTGRAGKKGFAISFYNERNKSL 653

Query: 604 SYTRLSVLKNTE----DGFL 619
           S   L +++ +     D F 
Sbjct: 654 STDLLQLMRKSNQEVPDWFE 673


>gi|50122015|ref|YP_051182.1| ATP-dependent RNA helicase DbpA [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612541|emb|CAG75991.1| ATP-independent RNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 460

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 86/462 (18%), Positives = 178/462 (38%), Gaps = 64/462 (13%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAG 321
           L  + ++  T  Q + +  +L     +       +   GSGKT    I +   +   +  
Sbjct: 19  LNELGYTEMTPVQAATLPAVLSGADVR------AKAKTGSGKTAAFGIGLLDRIVVSDFT 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + +++  +  Q I +  + G  P   +  +L        HI++
Sbjct: 73  TQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSLVHA----PHIVV 128

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATP-IPRT 434
           GT    QD ++   L L  +     DE  R        L    T     +++ TP   +T
Sbjct: 129 GTPGRIQDHLRKQSLALDSLKVLVLDEADRM-------LDMGFTDAIDDVISYTPSDRQT 181

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           L+ ++    +I +I+ +   R+P +  I   +  +  IE+     ++ ++   +   +  
Sbjct: 182 LLFSATYPQEIEQISAR-VQRQPQRFEIAD-DVEESAIEQRFYETTKDQRLPLLIAILSH 239

Query: 495 KKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
            +        N +   +      E    S++ +HG +   D++ V+  F N +C++L+AT
Sbjct: 240 YQPASCVVFCNTKRDCQSVFEALEMRGISVSALHGDLEQRDRDQVLVRFSNRSCRVLVAT 299

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS---- 604
            V   G+D+ + ++++           +H++ GR GR       + L  P     +    
Sbjct: 300 DVAARGLDIKELALVVNFELAFDPEVHVHRI-GRTGRAGTQGLAVSLCTPQEMNRANLIE 358

Query: 605 --------YTRLSVLKNTED-GFLIAEEDL--------KQRKEGEILG--IKQSGMPKFL 645
                   +T    +  + D         L        K R  G+ILG      G+    
Sbjct: 359 DYIGMRIKWTSADEISRSGDVALEPEMMTLCIDGGRKAKIR-PGDILGALTGDVGLTAAE 417

Query: 646 IAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRILL 685
           + + ++    + + I +  AK  L Q      ++G+S +  L
Sbjct: 418 VGKIDMFPLHAYVAIRKDSAKRALQQL-QKGKIKGKSCKARL 458


>gi|46580391|ref|YP_011199.1| ATP-dependent RNA helicase RhlE [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449808|gb|AAS96458.1| ATP-dependent RNA helicase RhlE [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233634|gb|ADP86488.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
          Length = 462

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 68/371 (18%), Positives = 133/371 (35%), Gaps = 43/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ----AVIM 327
            PT  Q  AI   L           +     G+GKT   ++ M   +  G +    A+++
Sbjct: 23  QPTPVQRGAIPPALAGEDV------LALAATGTGKTAAFVLPMLQRLMDGPRGAVRALVV 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA+Q ++ +++    +++    I G +    +   L         +++G      
Sbjct: 77  APTRELAEQTHDHVRRLGSMSRLRSTTIYGGVGVVAQALRLRA----GVEVVVGCPGRLL 132

Query: 388 DSIQYYKLILVIV-----DEQHR-----FGVQQRLKLTQKATAPHVLLMTATPIP--RTL 435
           D I+   L L  +     DE        F    R+ L         +L +AT     R L
Sbjct: 133 DHIRRGNLDLSSLEVLVLDEGDSLFDLGFLADVRMLLGMVPATCQRMLFSATMPDAVRVL 192

Query: 436 VLTSLGDIDISKITE-KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
              +L      ++   +PA         +P +    +++       EG    ++      
Sbjct: 193 AAEALRQPVTVQVDAVQPASTVHHALYPVPAHLRTPLLKTFLRSGPEGSVVVFV------ 246

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R    R     ++   S+  + G++S   + + ++ F++G   +L+AT V   G
Sbjct: 247 ----RTRHGARRLWQQLDNVGFSVTCLQGKLSQRRRLAALEGFRDGRYDVLVATDVAARG 302

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+   + ++  +      A +H++ GR GR     + +    P           VL   
Sbjct: 303 LDISQVTHVVNYDVPSTADAYIHRV-GRTGRAARNGTAMTFVTPADEAQVRNIERVL--- 358

Query: 615 EDGFLIAEEDL 625
             G +I  E L
Sbjct: 359 --GTVIPRERL 367


>gi|115469764|ref|NP_001058481.1| Os06g0701100 [Oryza sativa Japonica Group]
 gi|97536398|sp|P35683|IF4A1_ORYSJ RecName: Full=Eukaryotic initiation factor 4A-1; Short=eIF-4A-1;
           AltName: Full=ATP-dependent RNA helicase eIF4A-1;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 4
 gi|53791892|dbj|BAD54014.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group]
 gi|53792733|dbj|BAD53769.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group]
 gi|113596521|dbj|BAF20395.1| Os06g0701100 [Oryza sativa Japonica Group]
 gi|125598400|gb|EAZ38180.1| hypothetical protein OsJ_22532 [Oryza sativa Japonica Group]
 gi|215712230|dbj|BAG94357.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215740601|dbj|BAG97257.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767366|dbj|BAG99594.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 414

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 129/348 (37%), Gaps = 43/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 63  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYAVVECQALVLA 116

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 117 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS----GVHVVVGTPGRVFD 172

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +   +   V + +AT  P  L   
Sbjct: 173 MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEAL--- 229

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK- 496
                   +IT K    KP++ ++       E I++  V +  E  K   +C   E    
Sbjct: 230 --------EITRKFMN-KPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAI 280

Query: 497 -----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++
Sbjct: 281 TQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 340

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             GIDV   S++I  +        LH++ GR GR       I      
Sbjct: 341 ARGIDVQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRD 387


>gi|319760253|ref|YP_004124191.1| cold-shock DEAD box protein A [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318038967|gb|ADV33517.1| cold-shock DEAD box protein A [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 617

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 75/345 (21%), Positives = 134/345 (38%), Gaps = 41/345 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P   QE  I  +L+          +     GSGKT   L+ +  ++    A  Q +I+ 
Sbjct: 28  KPLPIQEKCIPLLLKGHD------ILGIAHTGSGKTAAFLLPLLQSININTASTQGLIIT 81

Query: 329 PIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  +    + +  + I V I+ G      +   L +      HII+GT     
Sbjct: 82  PTRELAIQIGQVCIDFIKYISGISVAILYGGQNYNIQLNDLRK----NPHIIVGTPGRLL 137

Query: 388 DSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D +            LI+   DE  R G  + +KL                  +T   ++
Sbjct: 138 DHLNRGTANISKLKILIIDEADEMLRMGFIEDVKLIVNKVPVD---------RQTACFSA 188

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG----KKAYWICPQIEEK 495
               +I KI+ K     P +  I  I+     I++   ++  G     +A     +IE+ 
Sbjct: 189 TFPENIKKISYKFMN-TPKEVCICNIDIHPPDIKQNFWLVKRGMITKHEALIRFLEIEDY 247

Query: 496 KE----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +S   R + + E+F  + A ++G M+   ++  +   K GT  +LI+T V 
Sbjct: 248 DAAIVFVRTKSETLRISEILENFGYNSAALNGDMNQSIRQKTVSRLKYGTLDILISTDVA 307

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
             G+D+   S++I  +  +   + +H++ GR GR   I   +L  
Sbjct: 308 ARGLDIQRISLVINYDVPNNYNSYIHRI-GRTGRAGRIGKSLLFV 351


>gi|302765623|ref|XP_002966232.1| hypothetical protein SELMODRAFT_143895 [Selaginella moellendorffii]
 gi|300165652|gb|EFJ32259.1| hypothetical protein SELMODRAFT_143895 [Selaginella moellendorffii]
          Length = 412

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 123/345 (35%), Gaps = 37/345 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 61  KPSAIQQRGIVPFCRGLDV------IQQAQSGTGKTATFCSGILQQLDGHLNECQALVLA 114

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++      Q  V    G       ++          H+++GT     D
Sbjct: 115 PTRELAQQIEKVMRALGDYLQTKVHACVGGTDVRQDQRI----CQAGVHVVVGTPGRVYD 170

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V L +AT  P  L +T
Sbjct: 171 MLRRRALRSEHIRMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGLFSATMPPEALEIT 230

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIE--RLKVVLSEGKKAYWICPQIEE 494
                +  +I  K      + IK   + + R D  ++            ++   C     
Sbjct: 231 RKFMSNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFCNT--- 287

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  G
Sbjct: 288 ------RRKVDWLTDKLRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 341

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           IDV   S++I  +        LH++ GR GR       I      
Sbjct: 342 IDVQQVSLVINFDLPTQPENYLHRI-GRSGRFGRKGVAINFLTKD 385


>gi|227829832|ref|YP_002831611.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.S.2.15]
 gi|227456279|gb|ACP34966.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.S.2.15]
          Length = 360

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 79/353 (22%), Positives = 133/353 (37%), Gaps = 42/353 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
            PT+ QE  I +++   S       I+Q   GSGKT   +I +   +E    A+I++P  
Sbjct: 37  KPTRVQEVVIPELMNGKSV------IVQAKTGSGKTAAYVIPI---LERNSTALILSPTR 87

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD--- 388
            LA Q  + IKK  +  QI V +I G M    +R++          I++GT     D   
Sbjct: 88  ELATQILDEIKKLGKYKQIDVSLIIGGMSYDDQRQS---------KIVVGTPGRLLDLWS 138

Query: 389 --SIQYYKLILVIVDE---QHRFGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSL 440
              I +     VIVDE       G    +++        +    +  IP    TL     
Sbjct: 139 KGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIAGFFSATIPDEIMTLAKEFS 198

Query: 441 GDIDISKITE-KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
            D+    + E KP      K V +  +  D+V     +    G+K               
Sbjct: 199 KDLREIVLDEYKPVEEVKQKFVKVRNDWNDKV--SKLLEEINGEKILVFART-------- 248

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R    +   L +    ++ ++ G M    +      FK G   +L+AT +   GID++D
Sbjct: 249 -RDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATDLASRGIDIID 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            + +I  +        +H++ GR GR   +   I  Y    +       ++L 
Sbjct: 308 VNKVINFDIPRDVETYIHRV-GRTGRMGRVGQAITFYTFREADMIKRINNLLA 359


>gi|153834391|ref|ZP_01987058.1| ATP-independent RNA helicase DbpA [Vibrio harveyi HY01]
 gi|148869239|gb|EDL68261.1| ATP-independent RNA helicase DbpA [Vibrio harveyi HY01]
          Length = 459

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 155/444 (34%), Gaps = 62/444 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ ++  T  Q  ++  IL      N+   I QG  GSGKT    + + + +      
Sbjct: 19  LESLNYTHMTPIQALSLPAIL------NQRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 73  VQSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 128

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++  +        L+L   D     G Q  L           ++  A    
Sbjct: 129 GTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDAL---------DAIIDAAPKQR 179

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I +I ++   + P    +   +    + +    V     +   +   +
Sbjct: 180 QTLLFSATFPEKIEQIAQR-IMQSPEMIKVESTHDTSSIAQYFYNVEGSEARDEALANLL 238

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              +        N +  V+       H   S+  +HG +   +++  +  F N +  +L+
Sbjct: 239 LTHQPESAVVFCNTKKEVQNVADELHHKGFSVVDLHGDLEQRERDQALVQFANKSVSILV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV +   +            +H++ GR GR          +          
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRI-GRTGRAGSKGLAFSFFGEKDGLRVAR 357

Query: 607 RLSVL-----------KNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLI 646
               L           K+T+  +      +            G+ILG    ++G+    +
Sbjct: 358 IEEYLDMDVVPATLPAKSTQQPYQAKMVTINIDGGKKQKVRAGDILGCLTGKNGITGAQV 417

Query: 647 A--QPELHDSLLEIARKDAKHILT 668
              Q     S + + +  AK  L 
Sbjct: 418 GKIQLMAMRSYVAVEKSVAKKALQ 441


>gi|59712046|ref|YP_204822.1| DEAD-box ATP dependent DNA helicase [Vibrio fischeri ES114]
 gi|59480147|gb|AAW85934.1| ATP-dependent RNA helicase, DEAD box family [Vibrio fischeri ES114]
          Length = 421

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 72/385 (18%), Positives = 142/385 (36%), Gaps = 56/385 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGG------ 322
            PT  Q  AI  +L           I   + GSGKT    + +   +   ++G       
Sbjct: 30  QPTPIQAQAIPSVLAGRD------LIAGANTGSGKTATFALPLLQQIAELQSGKAQASKG 83

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQAH 377
                +++ P   LA+Q  + IK Y  +    I    + G +    +  AL     G A 
Sbjct: 84  NFVTGLVLVPTRELAKQVADSIKSYAVHFNGAIKTVSVFGGVSVNTQMLALR----GGAD 139

Query: 378 IIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429
           I++ T     D I        +   L+L   D     G  + L         + LL  A 
Sbjct: 140 ILVATPGRLLDLISSNAVKLDKVKTLVLDEADRMLSLGFTEEL---------NELLALAP 190

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              +TL+ ++    ++  +T+      P++  +   +     + +    +++G+K   + 
Sbjct: 191 KQKQTLLFSATFPEEVQTLTQALLN-NPVEIQLQSAD--ASTVVQRVFTVNKGEKTSVLA 247

Query: 490 PQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
             I++ +        N ++              +  + HG      +  V+++FK G   
Sbjct: 248 HLIQKNQWRQALIFVNAKNACNHLADKLAKRGIAAEVFHGDKGQGARTRVLEAFKAGEID 307

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL-----YHP 598
           +LIAT +   G+D+    ++I  +        +H++ GR GR  E+   + L     YH 
Sbjct: 308 VLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRI-GRSGRAGEVGLALSLIDYEDYHH 366

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEE 623
                   ++ + +   +GF + EE
Sbjct: 367 FKIIEKKNKIRLEREQVEGFEVNEE 391


>gi|79313227|ref|NP_001030693.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|332641918|gb|AEE75439.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 415

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 125/341 (36%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 61  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLA 114

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 115 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVFD 170

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 171 MLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 230

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + + + +  +E L          Y      +   
Sbjct: 231 RKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETL-------CDLYETLAITQSVI 283

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 284 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 343

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   S++I  +        LH++ GR GR       I    
Sbjct: 344 VQQVSLVINFDLPTQPENYLHRI-GRSGRFGRKGVAINFVT 383


>gi|225427683|ref|XP_002273691.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 797

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 79/478 (16%), Positives = 163/478 (34%), Gaps = 49/478 (10%)

Query: 191 KDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKE 250
               QK+    + + F++  +    +        R+   + E          + +  +  
Sbjct: 235 AAQRQKEQAAELYDTFDMRVDRHWTEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSW 294

Query: 251 IGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVA 310
           +   ++   ++ + + R    +P+  Q +AI   LQ      +   I   + GSGKT   
Sbjct: 295 VESKLS--TELLKAVERAGYKTPSPIQMAAIPLGLQ------QRDVIGIAETGSGKTAAF 346

Query: 311 LIAMAAAV-----------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNM 359
           ++ M   +             G  AV+MAP   LAQQ  +   K+     I V  I G  
Sbjct: 347 VLPMLTYISRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQ 406

Query: 360 PQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQR 411
               +   + +       ++I T     D ++           ++L   D     G + +
Sbjct: 407 SIEEQGFRIRQGCE----VVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQ 462

Query: 412 LKLTQKATAPHVL--------LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
           +     A     L        L        T + ++     + ++  K   R P+   I 
Sbjct: 463 VVGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYL-RNPVVVTIG 521

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSS 517
              +  ++I +  +++ E +K + +   ++E  +       N +   +      +     
Sbjct: 522 TAGKATDLITQHVIMMKESEKMFKLQKLLDELGDKTAIVFINTKKSADNLAKGLDKAGYR 581

Query: 518 IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLH 577
           +  +HG  S   +E  ++ F+     +L+AT V   GID+ D + +I  +         H
Sbjct: 582 VTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTH 641

Query: 578 QLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF--LIAEEDLKQRKEGEI 633
           ++ GR GR  +            S   Y    +L          +A  +  + K G I
Sbjct: 642 RI-GRTGRAGKTGVATTFLTLHDSDVFYDLKQMLIQNNSPVPPELARHEASKFKPGAI 698


>gi|237833961|ref|XP_002366278.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211963942|gb|EEA99137.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221486500|gb|EEE24761.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
 gi|221508269|gb|EEE33856.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 734

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 76/458 (16%), Positives = 144/458 (31%), Gaps = 68/458 (14%)

Query: 212 PRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKIL----R 267
           P K KD   +   +      +        L  R   +          G     +L     
Sbjct: 187 PEKEKDVFSSDKLQSTGIKFDSYDKVPVELKGRGAERIMAIESFQTPGMQIHPLLLQNVS 246

Query: 268 NIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ--- 323
            + ++ PT  Q+++I  IL           +     GSGKT   L  + A +   G    
Sbjct: 247 RVNYTKPTPIQKNSIPTILSGRD------LMACAQTGSGKTAAFLYPIIARMLQDGPPPL 300

Query: 324 -------------------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR 364
                               ++++P   LA Q YE  +K+   T +    + G      +
Sbjct: 301 PQAAAGGGSGYRKPPAYPICLVLSPTRELAMQIYEEARKFQFGTGVRTVAVYGGSDVKRQ 360

Query: 365 RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKAT 419
              L     G   I + T     D ++  K+ L +V     DE  R      L   +   
Sbjct: 361 LIDL----DGGCDICVATPGRLVDLLERRKVRLGLVQFFVLDEADRMLDMGFLPQIKLIV 416

Query: 420 APHVLLMTATPI------------------PRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
               L  + TP                    +T++ ++    +I  +  K      I   
Sbjct: 417 ESFDLPPSPTPQTAGYPSLGGDSGAGRRVGRQTVMFSATFPREIQMLA-KDFLEDYIYLA 475

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFT 515
           +  +   +E I +      E +K   +   + E ++         +   +          
Sbjct: 476 VGRVGSTNEFIRQRLQYADEDQKLKLLVKLLRETEKGLTIIFVETKRKADMIEDYLVDDD 535

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
                IHG  +  ++E  +  FK   C +L+AT V   G+D+ + + +I  +        
Sbjct: 536 FPAVSIHGDRTQQEREEALRLFKAAKCPILVATDVAARGLDISNVTHVINFDLPTNIDDY 595

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           +H++ GR GR   +       +          L++L+ 
Sbjct: 596 VHRI-GRTGRAGNLGLATSFVNESNKPILRDLLNLLEE 632


>gi|167844421|ref|ZP_02469929.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           B7210]
          Length = 427

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 130/369 (35%), Gaps = 42/369 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
             + ++ PT  Q  AI  +L           +     G+GKT    + +   + A     
Sbjct: 17  NELGYTQPTPIQAQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHAFYAEN 70

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             I++ T     D +Q           L+L   D     G    +K  L +       LL
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLL 186

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L  + L    + ++  +    + I   I P++R  +      ++     
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNW 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  +         +    R          S   IHG  S   +   +  FK+ T +
Sbjct: 247 FQVLVFTRT--------KHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQ 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT +   GID+     ++  +  +     +H++ GR GR       + L      + 
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKQL 357

Query: 604 SYTRLSVLK 612
                 ++K
Sbjct: 358 LRDIERLIK 366


>gi|1170509|sp|P41378|IF4A_WHEAT RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
          Length = 414

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 129/348 (37%), Gaps = 43/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++ G    QA+++A
Sbjct: 63  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 116

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 117 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAS----GVHVVVGTPGRVFD 172

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L   
Sbjct: 173 IVRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEAL--- 229

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKKE 497
                   +IT K    KP++ ++       E I++  V +  E  K   +C   E    
Sbjct: 230 --------EITRKFMN-KPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAI 280

Query: 498 S------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +      N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++
Sbjct: 281 TQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 340

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             GIDV   S++I  +         H++ GR GR       I      
Sbjct: 341 ARGIDVQQVSLVINYDLPTQPENYQHRI-GRSGRFGRKGVAINFVTRE 387


>gi|317404068|gb|EFV84523.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 462

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 76/461 (16%), Positives = 170/461 (36%), Gaps = 68/461 (14%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---G 322
           +++ F   T  Q  ++  IL+          I Q   GSGKT    + +   ++      
Sbjct: 20  QSLGFEQMTPIQAQSLPLILEGRD------LIAQAKTGSGKTAAFGLGVLQKLDPARLAP 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           QA+++ P   LA Q  + +++  +    + +  + G      + ++L R     AHI++G
Sbjct: 74  QALLLCPTRELADQVAQELRRLARQIANVKILTLCGGAAARPQAESLAR----GAHIVVG 129

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    QD ++   L        +L   D     G    +                    +
Sbjct: 130 TPGRIQDHLERGSLDLSGLTTLVLDEADRMVDMGFYDDIVAIASHCPAK---------RQ 180

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++    +I K++ +         V +        IE++   +   ++   +   + 
Sbjct: 181 TLLFSATYPDNIRKLSARFLRNPAE--VKVEAQHDASRIEQIFYEIDPAERLDAVATLLA 238

Query: 494 EKK-------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             +        +      +    L     S++A+ +G +   +++ ++  F N +C +L+
Sbjct: 239 HFRPVSTLAFCNTKIRSHDLVERLQAAGISALAL-NGDLEQRERDEILIQFANQSCAVLV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP-------- 598
           AT V   G+D+ +   +I  +        +H++ GR GRG++    + L  P        
Sbjct: 298 ATDVAARGLDIQNLGAVINVDVTKDTEVHVHRI-GRSGRGDQKGLALSLCSPDEMRWANL 356

Query: 599 -------PLSKNSYTRL-----SVLKNTEDGFLIAEEDLKQRKEGEILG--IKQSGMPKF 644
                  PL+      L       L+       I      + + G++LG      G+   
Sbjct: 357 IEQYQGAPLTWGDLKSLRPKADRPLRAPMVTLCIQGGKKDKLRPGDLLGALTGDGGLAFE 416

Query: 645 LIA--QPELHDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            +        ++ + + RK AK   ++  + ++++G+  R+
Sbjct: 417 QVGKINITEFNAYVALDRKIAKQAFSRLSN-SNIKGRRFRM 456


>gi|303256630|ref|ZP_07342644.1| putative ATP-dependent RNA helicase [Burkholderiales bacterium
           1_1_47]
 gi|302860121|gb|EFL83198.1| putative ATP-dependent RNA helicase [Burkholderiales bacterium
           1_1_47]
          Length = 423

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 126/374 (33%), Gaps = 39/374 (10%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
              +K++    F+ PT  Q  AI  + Q          +     G+GKT   ++ M   +
Sbjct: 12  PQLEKLIEVNGFTSPTPIQMKAIPLVRQGYD------LLAAAQTGTGKTAAFVLPMLQKI 65

Query: 319 EAGG--------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
                       + +++ P   LA Q  E I    ++  +   ++ G +    ++ A+ +
Sbjct: 66  IEEPTLYQKRVPRVLVLTPTRELAAQVGETILSLGKDLGVRSAVVFGGVGINPQKAAIAK 125

Query: 371 IAHGQAHIIIGTHALFQDSIQ--YYKLILVIV---DEQHRFGVQQRLKLTQKATAPHVLL 425
                   ++ T     D +   +  L    +   DE  R      L   +       +L
Sbjct: 126 ----GLDFLVATPGRLLDLMNQGFADLSKTHILILDEADRMLDMGFLPDLK------RIL 175

Query: 426 MTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
               P  +TL+ ++    +I K+  +   +   ++V I  N+   ++ +    + +  K 
Sbjct: 176 KALPPDRQTLLFSATFSPEIKKLASEFLNKP--ESVEIERNKDSSLVRQTLYRVPKADKH 233

Query: 486 YWICPQIEEKKESNFRSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKN 539
             +   I + +              + L  H          IHG  S   + + +  FK 
Sbjct: 234 TVLRDLIVDNQWDQVLVFTRTKYGADKLVRHLLKDGLVAKAIHGDKSQNARTTALREFKE 293

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
               +L+AT +   G+D+     ++           +H++ GR GR  E      L  P 
Sbjct: 294 HKLPILVATDIAARGLDIEKLPQVVNYELPQQAEDYVHRI-GRTGRAGEAGEAYSLVSPE 352

Query: 600 LSKNSYTRLSVLKN 613
                      +K 
Sbjct: 353 ELPQLAAIEKFIKK 366


>gi|60115443|dbj|BAD90012.1| DEAD box RNA helicase [Tubifex tubifex]
          Length = 396

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 65/331 (19%), Positives = 123/331 (37%), Gaps = 41/331 (12%)

Query: 297 ILQGDVGSGKTLVALIAMAA------------AVEAGGQAVIMAPIGILAQQHYEFIKKY 344
           +     GSGKT   L+ +              +V    QA+I+ P   L  Q Y   +K+
Sbjct: 1   MACAQTGSGKTAAFLLPVLTGMLRNGVEGGQFSVVQEPQAIIVGPTRELVTQIYNEARKF 60

Query: 345 TQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VI 399
             NT +   ++ G +   ++     R     AH+++GT     D I+   L L      I
Sbjct: 61  AHNTMVRPVVVYGGVTTGYQ----AREVSKGAHLVVGTAGRLLDFIRKGYLSLAKVKYFI 116

Query: 400 VDEQHRFGVQQRLKLTQK---------ATAPHVLLMTATPIP--RTLVLTSLGDIDISKI 448
           +DE  R      L               T    L+ +AT     + L    L D     +
Sbjct: 117 LDEADRMLDMGFLPNMMALANELGMPAKTERQTLMFSATFPEEVQQLAKELLNDYIFVTV 176

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFN 508
                    I+  ++ +++ ++  + + ++ S+G++   +            +   +   
Sbjct: 177 GRVGGANTDIEQHVLQVDQFNKREKLVSILNSQGQQRTLVFV--------EQKRQADFIA 228

Query: 509 SLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENA 568
           S           IHG     ++E  +  FKNGT  +L+AT+V   G+D+   + +I  + 
Sbjct: 229 SYLSQSEFPTTSIHGDREQREREEALRDFKNGTAPILVATSVAARGLDIPGVNHVINFDM 288

Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
                  +H++ GR GR   +      ++P 
Sbjct: 289 PQSIDEYVHRI-GRTGRCGNLGRATSFFNPS 318


>gi|193214029|ref|YP_001995228.1| DEAD/DEAH box helicase domain-containing protein [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087506|gb|ACF12781.1| DEAD/DEAH box helicase domain protein [Chloroherpeton thalassium
           ATCC 35110]
          Length = 431

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 125/358 (34%), Gaps = 47/358 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L+ + +  PT  Q +AI + +           +     G+GKT    + +   +      
Sbjct: 19  LKELGYETPTAIQAAAIPEAILGKD------ILATAQTGTGKTAAFALPILHRLGENRSY 72

Query: 322 ----GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                +A+I+ P   LA Q    I+ Y +  ++   +I G +P   + K L R       
Sbjct: 73  DIRAPRALILTPTRELALQIDNNIRLYARYLRLRTGVIMGGVPAHPQIKMLRR----NPD 128

Query: 378 IIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQ--KATAPHVLLMT 427
           I++ T     D      + L  +        D     G    ++  +  +      LL +
Sbjct: 129 ILVATPGRLIDLFDQGFIGLDQIQTFVLDEADRMLDMGFIDDIRRIESLQPRDHQTLLFS 188

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
           AT  P    L S    +            P++  + P++ + + I +  + + +  K   
Sbjct: 189 ATLSPEIEALASRMLRE------------PVRIEVAPVSSVADNITQKVLFVEQNNKREL 236

Query: 488 ICPQIEE---KKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGT 541
           +    +E   K+   F    +R N + E       S   IH   S   ++  +  F  G 
Sbjct: 237 LHNLFKENDIKRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGK 296

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             +L+AT +   GIDV   S +I           +H++ GR  R     + +      
Sbjct: 297 INVLVATDIAARGIDVDGISHVINYELPDDPENYVHRI-GRTARAGASGTALSFCDAD 353


>gi|67623509|ref|XP_668037.1| eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3)
           [Cryptosporidium hominis TU502]
 gi|54659212|gb|EAL37800.1| eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3)
           [Cryptosporidium hominis]
          Length = 395

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 121/345 (35%), Gaps = 38/345 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMA 328
           P+  Q  AI  I+Q          I+Q   G+GKT V  +                +I++
Sbjct: 44  PSAIQRRAIVPIIQGRDT------IIQSQSGTGKTCVFSVGALEICSKSKENVPMVLILS 97

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA+Q  +          I      G        KA     +    II GT      
Sbjct: 98  PTRELAEQSEKVCTSIGDYLDIRTHSCIGGKKLKDDIKA----FNSGVSIISGTPGRVLQ 153

Query: 389 SIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            I+           LI+   DE   +G + ++    K            P  +T+++++ 
Sbjct: 154 MIEQGYLSTKKIKLLIIDEADEMFDYGFKTQVYDIYKYLP---------PRIQTVLVSAT 204

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
              DI  + +K         V      +D++ +    V  E  K   +C   +       
Sbjct: 205 LPDDILVMAQKFMRNPLQILVPKEEVSLDKIRQYHVQVEEEKWKFETLCDLYDTLTVTQS 264

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N ++ VE  +        +++ +HG +  + +E ++  F+ G  ++LI T +   G
Sbjct: 265 IIFCNTKNKVEWLSKKMMENHFTVSFVHGDLPQVTREEILREFREGKTRVLITTDLWGRG 324

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           IDV   ++++  +        +H++ GR GR       I L    
Sbjct: 325 IDVQQVNLVVNYDLPINKELYIHRI-GRSGRFGRSGIAINLITKE 368


>gi|325198557|gb|ADY94013.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           G2136]
          Length = 457

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 127/374 (33%), Gaps = 46/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q +AI   L           +     G+GKT   ++     ++    A        
Sbjct: 26  PTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHP 79

Query: 325 ---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++ P   LA Q  + ++ Y +N  +   ++ G M    +   L         I++ 
Sbjct: 80  VRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCE----IVVA 135

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-- 429
           T     D ++           ++L   D     G     R  +         LL +AT  
Sbjct: 136 TVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATFS 195

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              R L    +   +  ++  +      ++  II ++ I +     ++++        + 
Sbjct: 196 APIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQVIVF 255

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +  V+R          S   IHG  S   +   +++FK+G+ ++L+AT 
Sbjct: 256 --------CKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATD 307

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   G+D+ +   +I           +H++ GR GR       I L    + ++      
Sbjct: 308 IAARGLDIAELPFVINYEMPAQPEDYVHRI-GRTGRAGADGVAISL----MDESEQKMFE 362

Query: 610 VLKNTEDGFLIAEE 623
            +K      L+ E 
Sbjct: 363 SIKELTGNKLLIER 376


>gi|320534382|ref|ZP_08034868.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133424|gb|EFW25886.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 861

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 129/355 (36%), Gaps = 35/355 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +PT  Q+ AI  +L           +     G+GKT    + +  AV++     QA+++A
Sbjct: 183 TPTAIQKEAIPVLLAGRDV------VGVAQTGTGKTAAFGLPLLDAVDSRDSVVQALVLA 236

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E I      +  + V  + G  P   +  AL     G A +++GT     
Sbjct: 237 PTRELALQSAEAITDMAARSRGLDVVAVYGGAPYGPQIGAL----KGGAQVVVGTPGRVI 292

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIP--RTL 435
           D I    L L  V        DE  R G  + ++   +   T     L +AT  P  + +
Sbjct: 293 DLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAQSLPTDRRTALFSATMPPAIQAV 352

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
               L +    +++   +    +      +    ++    +V+     +A  +  +    
Sbjct: 353 ARQHLHEPVQVEVSRPASTVATVHQTYAVVPFRHKIGAVSRVLAVTDAEAAIVFVRT--- 409

Query: 496 KESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +S  E             A I G +   ++E +++  + GT  +L+AT V   G+
Sbjct: 410 -----KSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVATDVAARGL 464

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
           DV    +++  +      A +H++ GR GR       +    P           +
Sbjct: 465 DVDRIGLVVNFDVPREAEAYVHRI-GRTGRAGRHGEAVTFLTPKEKGKLRQIERL 518


>gi|297834230|ref|XP_002884997.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330837|gb|EFH61256.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 412

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 61  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGVLQQLDFSLVQCQALVLA 114

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 115 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVFD 170

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 171 MLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 230

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + + + +  +E L          Y      +   
Sbjct: 231 RKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETL-------CDLYETLAITQSVI 283

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 284 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 343

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 344 VQQVSLVINFDLPTQPENYLHRI-GRSGRFGRKGVAINFVTHD 385


>gi|117620037|ref|YP_857223.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561444|gb|ABK38392.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 408

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 124/370 (33%), Gaps = 32/370 (8%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QAV 325
           T  Q+ AI  I +          +     G+GKT    + +   +            + +
Sbjct: 2   TPVQQQAIPAIRRGRDV------LASAQTGTGKTAAFALPILQRLVDNPAPVQPSNARVL 55

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q    I  + ++  I    I G   Q  + + L+      AHII+ T   
Sbjct: 56  ILTPTRELAAQVASNINDFAKHLDITTLTIYGGGKQDVQARKLKA----GAHIIVATPGR 111

Query: 386 FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
             + +    L L  V E        R+     +     +L       + L+ ++     +
Sbjct: 112 LLEHLTACNLSLSGV-ECLVLDEADRILDMGFSADVQQILQAVNKTRQNLLFSATFSEAV 170

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---FRS 502
            K+       KP    +   N   + +      + + +K   +   I ++       F S
Sbjct: 171 KKLANL-MLDKPQIVSVNKQNSTADTVSHTVYPVEQKRKRELLSELIGKQNWPQVLVFAS 229

Query: 503 VVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  + L           A++HG  +   +   +  F  G  ++L+AT V   G+D+ D
Sbjct: 230 TRESCDELVAELNLDGIKSAVVHGDKAQGSRRRALREFTEGKLRVLVATEVAARGLDIPD 289

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-----LSKNSYTRLSVLKNT 614
              ++  +        +H++ GR GR  +    I           L   +     + +  
Sbjct: 290 LEYVVNYDLPFLAEDYVHRI-GRTGRAGKSGMAISFVSREEERTLLEIEALIGQKIRRIM 348

Query: 615 EDGFLIAEED 624
             G+ ++  D
Sbjct: 349 VPGYEVSSRD 358


>gi|332140339|ref|YP_004426077.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550361|gb|AEA97079.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 408

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 124/370 (33%), Gaps = 27/370 (7%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
                    ++ F  PT  QE  I   L           +     G+GKT   L+     
Sbjct: 9   DDALCHAAADMGFEAPTNIQELVIPHALDGRD------ILASAPTGTGKTAAFLLPACQF 62

Query: 318 VEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
           +    +        +I+ P   LA Q YE     T++TQ++  +ITG +     ++ L +
Sbjct: 63  LLDYPRKQPGATRILILTPTRELALQVYEQAVAITKHTQLVCGVITGGINYGTDKETLSK 122

Query: 371 IAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
                  I++ T     + I+        + E        R+     +T  + +   A  
Sbjct: 123 ----NLDILVATPGRLLEHIEKEAADCRDI-ECLILDEADRMLDMGFSTVVNQIAAEARW 177

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
             + L+ ++  +    K         P      P  +    I +   +  +      +  
Sbjct: 178 RKQNLLFSATLEGKGVKTFAHDILNNPEIVEANPSRKEKNKIHQWYHLADDMNHKQALLV 237

Query: 491 QIEEKK----ESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCK 543
            I +++       F    +R   L +   S    +  + G M    + + M  FKNG   
Sbjct: 238 NILKQETTTSAVVFVKTRDRLQMLKDFLASQDIQVCWLQGEMPQDKRNAAMARFKNGEVP 297

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT V   GIDV + S +I  +        +H++ GR GR     + I L      + 
Sbjct: 298 ILLATDVAARGIDVPNVSHVINFDMPRKADIYVHRI-GRTGRAGAKGTAISLVEAHDFEM 356

Query: 604 SYTRLSVLKN 613
                  +  
Sbjct: 357 VTKAARYMGE 366


>gi|124383654|ref|YP_001028341.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
 gi|124291674|gb|ABN00943.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
          Length = 488

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 130/371 (35%), Gaps = 43/371 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
             + ++ PT  Q  AI  +L           +     G+GKT    + +   + A     
Sbjct: 17  NELGYTQPTPIQAQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHAFYAEN 70

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             I++ T     D +Q           L+L   D     G    +K  L +       LL
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLL 186

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L  + L    + ++  +    + I   I P++R  +      ++     
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNW 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  +         +    R          S   IHG  S   +   +  FK+ T +
Sbjct: 247 FQVLVFTRT--------KHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQ 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQL--RGRVGRGEEISSCILLYHPPLS 601
           +L+AT +   GID+     ++  +  +     +H++   GR GR       + L      
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRTGRAGANGEAVSLVCVDEK 358

Query: 602 KNSYTRLSVLK 612
           +       ++K
Sbjct: 359 QLLRDIERLIK 369


>gi|46111511|ref|XP_382813.1| hypothetical protein FG02637.1 [Gibberella zeae PH-1]
 gi|91206544|sp|Q4IJH1|DBP3_GIBZE RecName: Full=ATP-dependent RNA helicase DBP3
          Length = 581

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 141/386 (36%), Gaps = 45/386 (11%)

Query: 270 PFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----G 321
           PF+    PT  Q ++    L           I   + GSGKT+   +    A+ A     
Sbjct: 177 PFANYKAPTPIQSASWPFTLSGRDV------IGVAETGSGKTMAFALPCVEAISALKHKH 230

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +AV+++P   LA Q YE +       ++    + G   +  +R  L R     A II+ 
Sbjct: 231 TKAVVVSPTRELAMQTYEQMASVAALNRMKCVCLYGGASKDDQRNLLNR----GADIIVA 286

Query: 382 THALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-------ATAPHVLLMTAT 429
           T    +D     ++        ++DE  R   +   +  +              L+ TAT
Sbjct: 287 TPGRLKDFMSDGTVDLSHSAFAVLDEADRMLDKGFEEDIKMILSSCPPREKRQTLMFTAT 346

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                  L +   +   KI    +G K      + +     + + ++V+   GK+   + 
Sbjct: 347 WPQSVQTLAATFMVSPVKIA-IGSGGKETAGGAVELQANARISQSVEVLEPRGKEFRLLE 405

Query: 490 PQIEEKK----------ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
              E ++             ++    R  +        +  IHG +    +   +++FK+
Sbjct: 406 VLKEHQQGSKKNDRILVFCLYKKEATRIENFLSRKGIRVGGIHGDLRQEQRTRSLEAFKS 465

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +L+AT V   G+D+ +  ++I           +H++ GR GR  +    I  +   
Sbjct: 466 GQTPVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRI-GRTGRAGKTGQAITFFTVE 524

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDL 625
              +S + +++L+          EDL
Sbjct: 525 DKSHSGSLVNILRGAN---QPVPEDL 547


>gi|195128419|ref|XP_002008661.1| GI13618 [Drosophila mojavensis]
 gi|193920270|gb|EDW19137.1| GI13618 [Drosophila mojavensis]
          Length = 595

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 142/360 (39%), Gaps = 29/360 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----AGGQAVIM 327
            PT  Q  A+  +L+D +       +     GSGKTL  L  +   +      G +A+++
Sbjct: 148 QPTPIQMQALPVLLKDRA------LMACAPTGSGKTLAFLTPIINGLRCHKTTGLRALVL 201

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LAQQ Y    + T+ T +    I+     +  ++        +  I+I T    +
Sbjct: 202 APTRELAQQIYRECGELTKGTGLRTHFIS---KVSEAKQQYGPECKQKYDILISTPNRVR 258

Query: 388 DSIQ-------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             +Q       +  +  +++DE  R   + +    ++     +      P  R    ++ 
Sbjct: 259 FLLQQQPPLLDFKSIEWLVLDEADRLMEEGQNNFKEQ--LDDIYAACTNPQKRVAFFSAT 316

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN- 499
             + ++K   +        T+ +  +  D V + L  V SE  K   +   + +  +   
Sbjct: 317 YTVPVAKWALRHLKNLVRVTIGVQNSATDTVKQELLFVGSESGKLLAVREMVRQGLQPPV 376

Query: 500 --FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             F    ER   L E       ++ +IH   +   +++ + +F+ G   +LI T ++  G
Sbjct: 377 LVFVQSKERAKQLFEELLYDGINVDVIHAERTQHQRDNCVRAFREGHIWVLICTELMGRG 436

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           ID    +++I  +     ++ +H++ GR GR       +  +    + N  +   ++KN+
Sbjct: 437 IDFKGVNLVINYDFPPSKISYIHRI-GRTGRAGRPGRAVTFFTQDDTANLRSIAQIIKNS 495


>gi|86130411|ref|ZP_01049011.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85819086|gb|EAQ40245.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 428

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 72/365 (19%), Positives = 135/365 (36%), Gaps = 32/365 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            PT  Q+ AI  +L   + K  ++ + Q   G+GKTL   + +   ++      QAVI+ 
Sbjct: 25  QPTDIQQQAIPALL---TSKKDVVALAQ--TGTGKTLAFGVPLLQLIDRTNPTVQAVILV 79

Query: 329 PIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   L QQ Y  I  Y      +   +  G +P     + L+      A I+I T     
Sbjct: 80  PTRELGQQIYSNIVAYAAQLPEVSAAVFYGGIPVKENIERLKEP----AQIVIATPGRLI 135

Query: 388 DSIQYYKLILVI-----VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
           D ++   + +       +DE           ++    +  V++ T     RT + ++   
Sbjct: 136 DLMERKAINISQANYLVLDEADEM-------VSALKNSIDVIVETMPNNRRTFLFSATMP 188

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK---KESN 499
             + ++ +    + P++      N     I    VV+   +K   +   +  K   +   
Sbjct: 189 GTVKQLVQNYLSKNPLEITAERANLASHKITHDYVVVEPIEKLDVLMHFLNSKIGERGII 248

Query: 500 FRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
           F       N L ++      S   +HG +S   ++ +M  F+ G   +L+AT +   GID
Sbjct: 249 FCKTKAAVNKLAKNLAINKFSSGALHGSLSQAIRDRMMGQFREGHIDILVATDLAARGID 308

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           V + S ++  +   F    +H+  GR  R  +    + +               L  T  
Sbjct: 309 VKEISYVVNYHLPEFYDMYVHR-TGRTARAGKTGYALTVLQQEEVAEIPEFEEELGITFS 367

Query: 617 GFLIA 621
            F  A
Sbjct: 368 AFAKA 372


>gi|332532711|ref|ZP_08408587.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037927|gb|EGI74376.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 415

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 123/346 (35%), Gaps = 40/346 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q   I  IL           +     G+GKT   ++ +   +            +
Sbjct: 26  QPTAIQIKTIPPILAG------SDVMGSAQTGTGKTAAFVLPLLHKLLNTPKKDEQGLAR 79

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            VI+ P   LAQQ +   +KY Q T I   +  G      + KAL+      A +I+ T 
Sbjct: 80  VVILTPTRELAQQVFASFEKYAQGTNINGALAYGGASIGPQIKALK-----TAQVIVATP 134

Query: 384 ALFQDSIQYYKLILVIVD--------EQHRFGV--QQRLKLTQKATAPHVLLMTATPIPR 433
               D I    ++L  VD             G   + R  L         LL +AT    
Sbjct: 135 GRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIRRILRHIPGDRQTLLFSATFDDS 194

Query: 434 T--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              L    L + ++ ++ ++ +    ++ VI  ++   +      ++  +  +   I  +
Sbjct: 195 VFELSKKLLKNPELIEVDKRNSAAVEVEQVIYAVDEDRKRELVSHMIGMKNWRRVLIFTR 254

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    + + ++              IHG  S   ++  + +FK G  ++L+AT V 
Sbjct: 255 T--------KQMADQLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGITRVLVATDVA 306

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
             G+D+     +I     +     +H++ GR GR  E    + L  
Sbjct: 307 ARGLDISTLRYVINFELPYIAEDYVHRI-GRTGRAGEQGLAMSLVS 351


>gi|331009646|gb|EGH89702.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 625

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 132/378 (34%), Gaps = 47/378 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT      +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFAPPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKNTEDGFLIAEEDL 625
             + K       IA+ DL
Sbjct: 365 ERMTKQ-----KIADGDL 377


>gi|322504299|emb|CAM41648.2| putative ATP-dependent DEAD/H RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 602

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 68/379 (17%), Positives = 130/379 (34%), Gaps = 45/379 (11%)

Query: 257 VEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA 316
            +      +       PT  Q  +   +L      N    +     GSGKT+  +I  A 
Sbjct: 153 PDAIHQAFMDAGFQ-RPTPIQSVSWPVLL------NSRDIVGVAKTGSGKTMAFMIPAAL 205

Query: 317 AVEA--------GGQAVIMAPIGILA-QQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
            + A        G  A+++AP   LA Q   E  K  T+   I+   + G  P+  ++++
Sbjct: 206 HIMAQPPLQPGDGPIALVLAPTRELAVQIETETRKSLTRVPSIMTTCVYGGTPKGPQQRS 265

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLT--QK 417
           L        H+ I T     D ++           L L   D     G + +++    Q 
Sbjct: 266 LRA----GVHVCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQI 321

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKI----TEKPAGRK-PIKTVIIPINRIDEVI 472
            T    L+ +AT       L +    D  ++     E  A         ++     +E +
Sbjct: 322 RTDRQTLMFSATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHKEEKL 381

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
           E     +        +   ++ KK  +        + L      ++  IHG      ++ 
Sbjct: 382 E----EILRQVGPQRVLVFVKTKKSCDILQ-----DRLGRALRQTVLAIHGDKLQSSRDY 432

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           V+D F+     +L+AT V   G+D+ +  +++  +        +H++ GR GR  +    
Sbjct: 433 VLDRFRKDERAILVATDVAARGLDIKNLDVVVNYDMPLNIEDYVHRI-GRTGRAGKTGDA 491

Query: 593 ILLYHPPLSKNSYTRLSVL 611
                   +  +   L  L
Sbjct: 492 YSFVSSADNSKTIRDLIEL 510


>gi|289208228|ref|YP_003460294.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
 gi|288943859|gb|ADC71558.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 627

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 133/358 (37%), Gaps = 37/358 (10%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +   + L  + F+ PT  Q + I  +L           + +   G+GKT    + +  +
Sbjct: 13  SESLARALLQLGFTTPTPVQAACIPALLAG------DDVLGEAQTGTGKTGAFGLPLIDS 66

Query: 318 VEAGG---QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAH 373
           ++      QA+I+AP   LA Q    ++ +      + +  + G  P   + +AL     
Sbjct: 67  IDPAQRRVQALILAPTRELAGQVATALEGFAASIDGLEILPVYGGQPMGVQIRALRD--- 123

Query: 374 GQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHV 423
             A +++GT     D I+   L        +L   DE  R G  + ++    Q       
Sbjct: 124 -GAQVVVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMGFVEEIEWILEQTPAERQT 182

Query: 424 LLMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS 480
            L +AT   PI R          +I       AG    ++  +   R         + + 
Sbjct: 183 TLFSATMPAPIRRIAHRHMREPQEIRIGAGNEAGTDIDQSYCLVDQRHKTEALGRMIEVE 242

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            G  A  +  + +        +  E   +L+     S + ++G M   ++E V+   ++G
Sbjct: 243 AGLDAAIVFARTK-------AATAEIAEALNAQGVQS-SPLNGDMEQGERERVVADLRDG 294

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
              +++AT V   GIDV   + +   +A       +H++ GR GR       IL   P
Sbjct: 295 RLDVIVATDVAARGIDVPRITHVFNYDAPGDAEVYVHRI-GRTGRAGRKGRAILFLEP 351


>gi|208779218|ref|ZP_03246564.1| dead/deah box helicase domain protein [Francisella novicida FTG]
 gi|208745018|gb|EDZ91316.1| dead/deah box helicase domain protein [Francisella novicida FTG]
          Length = 441

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 126/346 (36%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
            PT  Q  AI  +L+          +     G+GKT    + +   +    +A       
Sbjct: 23  KPTPIQAQAIPIVLKG------NDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQANRIKT 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I+ Y  NT I   +I G +    +   L +       I+I T  
Sbjct: 77  LILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK----GVEILIATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L   ++DE  R      +   +K    H LL       +TL+ ++
Sbjct: 133 RLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKK---IHKLL---PKKLQTLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I  +  +     P       +N   + I +    L +  K   +   I+++    
Sbjct: 187 TFSSEIKNLANEFLN-NPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  ++   + +    +   S + IHG  S   +   +  FK+    +L+AT +   
Sbjct: 246 VLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GID+     +I  +  +     +H++ GR GR  +    I L    
Sbjct: 306 GIDIAQLPCVINLDLPNVAEDYVHRI-GRTGRAGQEGLAISLVSAD 350


>gi|323474157|gb|ADX84763.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           REY15A]
 gi|323476770|gb|ADX82008.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           HVE10/4]
          Length = 360

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 79/353 (22%), Positives = 133/353 (37%), Gaps = 42/353 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
            PT+ QE  I +++   S       I+Q   GSGKT   +I +   +E    A+I++P  
Sbjct: 37  KPTRVQEVVIPELMNGKSV------IVQAKTGSGKTAAYVIPI---LERNSTALILSPTR 87

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD--- 388
            LA Q  + IKK  +  QI V +I G M    +R++          I++GT     D   
Sbjct: 88  ELATQILDEIKKLGKYKQIDVSLIIGGMSYDDQRQS---------KIVVGTPGRLLDLWS 138

Query: 389 --SIQYYKLILVIVDE---QHRFGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSL 440
              I +     VIVDE       G    +++        +    +  IP    TL     
Sbjct: 139 KGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIAGFFSATIPDEIMTLAEEFS 198

Query: 441 GDIDISKITE-KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
            D+    + E KP      K V +  +  D+V     +    G+K               
Sbjct: 199 KDLREIVLDEYKPVEEVKQKFVKVRNDWNDKV--SKLLEEINGEKILVFART-------- 248

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R    +   L +    ++ ++ G M    +      FK G   +L+AT +   GID++D
Sbjct: 249 -RDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATDLASRGIDIID 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            + +I  +        +H++ GR GR   +   I  Y    +       ++L 
Sbjct: 308 VNKVINFDIPRDVETYIHRV-GRTGRMGRVGQAITFYTFREADMIKRINNLLA 359


>gi|311103372|ref|YP_003976225.1| ATP-dependent RNA helicase RhlE 1 [Achromobacter xylosoxidans A8]
 gi|310758061|gb|ADP13510.1| ATP-dependent RNA helicase RhlE 1 [Achromobacter xylosoxidans A8]
          Length = 506

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 127/363 (34%), Gaps = 38/363 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  +L+          +     G+GKT    + +   +             
Sbjct: 27  APTPIQAQAIPQVLKG------GDLLAAAQTGTGKTAGFTLPILHLLMQKKPELRKPGRP 80

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           + +I+ P   L  Q  E ++ Y + T +   ++ G +    +  AL +       I++ T
Sbjct: 81  RCLILTPTRELTAQVEESVQTYGKYTPLNSMVMFGGVNINPQISALRKP----LDILVAT 136

Query: 383 HALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      +    + ++++DE  R      ++  +K       ++   P  R  +L
Sbjct: 137 PGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRK-------ILALLPKQRQNLL 189

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
            S    D  +   +     P +  + P N   E++ +   ++ +  K   I   I E   
Sbjct: 190 FSATFSDEIRTLARGVLNNPGEVSVTPRNTATELVTQTVHMVEQHHKRDLISHIIRESGW 249

Query: 498 SN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    +    R          + A IHG  S   +   +  FK+ T  +L+AT + 
Sbjct: 250 HQVLVFTRTKHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDSTVTVLVATDIA 309

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     ++     +     +H++ GR GR     + + L      K       ++
Sbjct: 310 ARGLDIDQLPQVVNFELPNVPEDYVHRI-GRTGRAGATGAAVSLVDNSEIKLLKDIERLI 368

Query: 612 KNT 614
           K T
Sbjct: 369 KKT 371


>gi|331662753|ref|ZP_08363676.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143]
 gi|331061175|gb|EGI33139.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143]
          Length = 457

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 25/358 (6%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q   + L  +          R+     + A   ++  A    +TL+ ++ 
Sbjct: 128 ATPGRLLDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE--- 497
               I+ I+ +   R P+   I   + +   IE+     S   K   +   +   +    
Sbjct: 187 WPEAIAAISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSC 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGNLEQRDRDQTLVRFANGSARVLVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361


>gi|194743932|ref|XP_001954452.1| GF16725 [Drosophila ananassae]
 gi|190627489|gb|EDV43013.1| GF16725 [Drosophila ananassae]
          Length = 693

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 135/375 (36%), Gaps = 47/375 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---------AGG 322
            P+  Q  A   +L+     + M+ I Q   G+GKTL  L+      E          G 
Sbjct: 289 KPSPIQAQAWPILLKG----HDMIGIAQ--TGTGKTLAFLLPGMIHTEYQSVPRGQRGGP 342

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++AP   LA Q    +KKY+      V +  G      RR  +  +  G A III T
Sbjct: 343 NVLVLAPTRELALQIEMEVKKYSFRNMRAVCVYGGG----DRRMQISDVERG-AEIIICT 397

Query: 383 HALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP 432
                D +Q           L+L   D     G   Q R  L         ++ +AT  P
Sbjct: 398 PGRLNDLVQANVINVSSITYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQTIMTSATWPP 457

Query: 433 --RTLVLTSLGDIDISKITEKP-AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
             R L  + + +     +     A    +K VI  +    E  + +K  +   +K   I 
Sbjct: 458 GVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIELLQDDAEKFQTIKSFVKNMRKTDKII 517

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                K  ++  S     +            IHG     D+E  +   K+G  ++L+AT 
Sbjct: 518 VFCGRKARADDLSSDLTLD------GFCTQCIHGNRDQSDREQAIADIKSGAVRILVATD 571

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ D S +I  +        +H++ GR GR     + I          +   + 
Sbjct: 572 VASRGLDIEDISHVINYDFPRNIEEYVHRV-GRTGRAGRKGTSISFVTREDWGMAKELID 630

Query: 610 VLKNTEDGFLIAEED 624
           +L+        AE+D
Sbjct: 631 ILQE-------AEQD 638


>gi|170595924|ref|XP_001902572.1| DEAD/DEAH box helicase family protein [Brugia malayi]
 gi|158589680|gb|EDP28579.1| DEAD/DEAH box helicase family protein [Brugia malayi]
          Length = 658

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 64/390 (16%), Positives = 137/390 (35%), Gaps = 41/390 (10%)

Query: 248 KKEIGIPINVEGKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGK 306
           K           +    ++R   +  PT  Q  +I   L           +     GSGK
Sbjct: 133 KPVTAFAHFGFDEALMNVIRKSEYEHPTPIQAQSIPAALSGRDV------LGIAKTGSGK 186

Query: 307 TLVALIAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGN 358
           T+  L      +          G  ++++ P   LA Q Y+  K+Y +   I V    G 
Sbjct: 187 TVAYLWPAIIHIMDQPDLKEGDGPISLVIVPTRELALQVYQEAKRYCKVYNINVVCAYGG 246

Query: 359 MPQAHRRKALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLK 413
             +  ++ AL       A ++I T     D ++     + ++  ++ DE  R        
Sbjct: 247 GNKWEQQNALTE----GAELVIATPGRIIDLVKINATNFTRVTFLVFDEADRMFDMGFEA 302

Query: 414 LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID-EVI 472
             Q  +          P  + L+ ++     + K+  + A   P++ V   +   + +VI
Sbjct: 303 QVQSISDHIR------PDRQCLMFSATFKSKVEKLA-REALTDPVRIVQGEVGEANSDVI 355

Query: 473 ERLKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRM 525
           + ++V+ +   K  W+   + +             +   E   +          ++HG M
Sbjct: 356 QTVEVLENADAKWQWLLNHLVKFSSMGKVLIFVTKKIHAEDVANRLRTKDFKPILLHGDM 415

Query: 526 SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR 585
              ++   + +F+     +L+AT V   G+D+ +   +I  +        +H++ GR GR
Sbjct: 416 LQAERNEKLQAFRK-DANILVATDVAARGLDIPEIKTVINFDLARDIDTHVHRI-GRTGR 473

Query: 586 GEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
             +      L      + +   +  L++  
Sbjct: 474 AGQRGWAYTLVQESDKEMAGHLVRNLESVN 503


>gi|50289021|ref|XP_446940.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661294|sp|Q6FS54|DBP3_CANGA RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49526249|emb|CAG59873.1| unnamed protein product [Candida glabrata]
          Length = 540

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 70/386 (18%), Positives = 148/386 (38%), Gaps = 36/386 (9%)

Query: 259 GKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
            K  Q  +   P  PT  Q  +   +L           I   + GSGKT    +     +
Sbjct: 138 DKEVQNEIAKFP-KPTPIQAVSWPYLLSGKDV------IGVAETGSGKTFAFGVPAINNL 190

Query: 319 EA------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                   G + ++++P   LA Q Y+ +   TQ   I   ++ G +P+  +R+ + +  
Sbjct: 191 LTSSSKPKGIKVLVISPTRELASQIYDNLVLLTQKVGIDCCVVYGGVPKDDQRRQIAKS- 249

Query: 373 HGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
               ++++ T     D I+   + L  VD        + L+   +     ++  T +   
Sbjct: 250 ----NVVVATPGRLLDLIEEGSVDLSPVDYMVLDEADRMLEKGFEEDIKRIIGQTKSKDR 305

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI--DEVIERLKVVLSEGKKAYWICP 490
           +TL+ T+    ++ ++      ++P+K  I   + +  ++ I ++  V+    K   +  
Sbjct: 306 QTLMFTATWPKEVRELASTFM-KEPVKVSIGNRDELSANKRITQIVEVVDPRSKERKLLD 364

Query: 491 QIEEKKESNFRSVV-----------ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
            +++ +    ++              R      +    +A IHG +S   +   ++ FK+
Sbjct: 365 LLKKYQSGPKKNDKVLIFALYKKEASRVERNLNYNGYKVAAIHGDLSQQQRTQALNEFKS 424

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   LL+AT V   G+D+ +   +I           +H++ GR GR  +  +   L+   
Sbjct: 425 GKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRI-GRTGRAGQTGTAHTLFTEQ 483

Query: 600 LSKNSYTRLSVLKNTEDGFLIAEEDL 625
               +   ++VL           EDL
Sbjct: 484 EKHLAGGLVNVLNGAN---QPVPEDL 506


>gi|328870357|gb|EGG18732.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 734

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 136/363 (37%), Gaps = 42/363 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----GGQAVIM 327
            P+  Q  +I  I+           I     GSGKT    I +  ++      G + VI+
Sbjct: 270 DPSPIQMQSIPAIISGREV------IACAPTGSGKTAAFSIPILQSLHEPKKLGFRCVIV 323

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LAQQ Y   + +++     + +++  +                  I+I T     
Sbjct: 324 SPTRELAQQIYRNFRLFSKGKPFKICVLSKTVSGDQM-----APISKNFDILITTPQRIV 378

Query: 388 DSIQYYKLILVIV-----DEQHRFGVQQRLKLTQ------KATAPHVLLMTATP--IPRT 434
           + IQ   + L  V     DE  +    Q L+         K  +  + L +AT   +   
Sbjct: 379 NLIQSRVVKLNHVEHLVFDEADKLFDDQFLEQVDSVINACKNASLKIHLFSATMNVVVEE 438

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +  + + +     I  + +    +   ++ + + D  +  L+ +  +G +   +      
Sbjct: 439 MARSIMKNPIKVLIGSQNSASINVDQKLLFVGKEDGKLLALRQLFQKGLEPPILI----- 493

Query: 495 KKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F    ER   L +       ++ +IH   +   +++++  F++G   +LI T ++
Sbjct: 494 -----FVQSKERATELFQELIFDNINVDVIHSDRTQQQRDTIVQRFRSGKIWVLICTELM 548

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D    + +I  +  +   + +H++ GR GR       I LY         +  +V+
Sbjct: 549 ARGMDFKGVNYVINFDFPNTIASYVHRI-GRTGRAGRQGKAITLYTKDDFPMIPSISNVI 607

Query: 612 KNT 614
           +N+
Sbjct: 608 RNS 610


>gi|326796081|ref|YP_004313901.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546845|gb|ADZ92065.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 446

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/363 (18%), Positives = 130/363 (35%), Gaps = 28/363 (7%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---- 320
           L +  + +PT+ QE AI + +           +     GSGKT   L+     V      
Sbjct: 16  LEHFGYDTPTQIQECAIPEAIAGRD------LLASSKTGSGKTFAYLLPAINRVYQRKAL 69

Query: 321 ---GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAH 377
                + V++ P   LA+Q Y  ++     +++   +I G      + KAL++      H
Sbjct: 70  SRRDPRVVVLVPTRELAKQVYGQLRTLLAGSRLTSALILGGENFNDQHKALQK----DPH 125

Query: 378 IIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            ++GT     D ++   L L   +        + L L    +   +    +    +TL  
Sbjct: 126 FVVGTPGRLTDHLEKRHLYLEGTELLILDEADRMLDLGFADSMRAINNAASHRQRQTLFF 185

Query: 438 TSLGD-IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           ++  D  D+S I E    R+P +  +       + I +   +         +   +    
Sbjct: 186 SATLDNTDVSVIAE-ELLREPSRVAVGHGTDQHQDISQHVFLCDHLDHKEALLKHLVSNA 244

Query: 497 ESNF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
           E          +    R + L   +  +   + G +S   + SVM++F  G  ++L++T 
Sbjct: 245 ELKQGIVFTATKQDTVRLSELVTSWGYTSEALSGDLSQSARNSVMENFSRGKFQILVSTD 304

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   G+D+   S +   +  +     +H+  GR GR            P    N      
Sbjct: 305 IASRGLDIAAVSHVFNFDVPNPAEEFVHR-TGRTGRAGFKGDAYTFVGPKDWYNFKAVEE 363

Query: 610 VLK 612
            LK
Sbjct: 364 FLK 366


>gi|320540183|ref|ZP_08039838.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
 gi|320029849|gb|EFW11873.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
          Length = 623

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 149/412 (36%), Gaps = 44/412 (10%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++A    
Sbjct: 22  LTDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLHNLQADLKA 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 76  PQILVLAPTRELAVQVAEAMTDFSKHMHSVNVVALYGG----QRYDVQLRALRQGPQIVV 131

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   + +        L +AT 
Sbjct: 132 GTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTALFSATM 191

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + D     I      R  I      ++ + +    ++ + +E   A  I
Sbjct: 192 PEAIRRITRRFMKDPQEVHIQSSITTRPDISQSYWTVHGMRKNEALVRFLEAEDFDAAII 251

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L     SS A+ +G M+   +E  ++  K+G   +LIAT
Sbjct: 252 FVRTKN-------ATLEVAETLERSGYSSAAL-NGDMNQALREQTLERLKDGRLDILIAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 304 DVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIE 362

Query: 609 SVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             +K T     I E +L   +   E  +         +      +++ +LL 
Sbjct: 363 RTMKLT-----IPEVELPNAELLGERRLAKFAAKVQQQLESRDLDMYRALLA 409


>gi|225569182|ref|ZP_03778207.1| hypothetical protein CLOHYLEM_05264 [Clostridium hylemonae DSM
           15053]
 gi|225161981|gb|EEG74600.1| hypothetical protein CLOHYLEM_05264 [Clostridium hylemonae DSM
           15053]
          Length = 526

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 126/372 (33%), Gaps = 40/372 (10%)

Query: 260 KIAQKILRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
               K ++ + F   +  Q  AI  + +          I Q   G+GKT    I +   +
Sbjct: 13  PEIMKAVKKMGFEEASPIQAKAIPLVREGRD------IIGQAQTGTGKTAAFGIPLLEKI 66

Query: 319 EAGG---QAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHG 374
           +      QAV++ P   LA Q  + I+   +    I V  I G      + ++L+     
Sbjct: 67  DPKNKKLQAVVLCPTRELAIQVADEIRTLAEYMHGIKVLPIYGGQEIVKQIRSLKS---- 122

Query: 375 QAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLM 426
              ++IGT     D ++   + +  V        DE    G ++ ++   +         
Sbjct: 123 GVQLMIGTPGRVMDHMRRKTVKMEHVHTVVLDEADEMLNMGFREDIETILEGVPQE---- 178

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
                 +T++ ++     I  IT+K      I  V      +   IE+    +    K  
Sbjct: 179 -----RQTVLFSATMPKPILDITKKFQKHAEIVKVTKKELTVPN-IEQFYYEVKPKNKEE 232

Query: 487 WICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
            +   ++           N +  V+   +         A +HG +    ++ VM  F++G
Sbjct: 233 VLSRLLDIYNPKLSVVFCNTKKQVDILVNGLLGRGYFAAGLHGDLKQAQRDRVMQGFRSG 292

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
              +L+AT V   GIDV +   +   +        +H++ GR GR   +           
Sbjct: 293 KTDILVATDVAARGIDVDEVEAVFNYDLPQDDEYYVHRI-GRTGRAGRVGRSFSFVSGKE 351

Query: 601 SKNSYTRLSVLK 612
                      K
Sbjct: 352 VYKLREIQRYCK 363


>gi|15898827|ref|NP_343432.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|229578785|ref|YP_002837183.1| DEAD/DEAH box helicase [Sulfolobus islandicus Y.G.57.14]
 gi|238619197|ref|YP_002914022.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.4]
 gi|284997087|ref|YP_003418854.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.D.8.5]
 gi|13815318|gb|AAK42222.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|228009499|gb|ACP45261.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.G.57.14]
 gi|238380266|gb|ACR41354.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.4]
 gi|284444982|gb|ADB86484.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.D.8.5]
          Length = 360

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 79/353 (22%), Positives = 133/353 (37%), Gaps = 42/353 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIG 331
            PT+ QE  I +++   S       I+Q   GSGKT   +I +   +E    A+I++P  
Sbjct: 37  KPTRVQEVVIPELMNGKSV------IVQAKTGSGKTAAYVIPI---LERNSTALILSPTR 87

Query: 332 ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD--- 388
            LA Q  + IKK  +  QI V +I G M    +R++          I++GT     D   
Sbjct: 88  ELATQILDEIKKLGKYKQIDVSLIIGGMSYDDQRQS---------KIVVGTPGRLLDLWS 138

Query: 389 --SIQYYKLILVIVDE---QHRFGVQQRLKLTQKATAPHVLLMTATPIPR---TLVLTSL 440
              I +     VIVDE       G    +++        +    +  IP    TL     
Sbjct: 139 KGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIAGFFSATIPDEIMTLAKEFS 198

Query: 441 GDIDISKITE-KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
            D+    + E KP      K V +  +  D+V     +    G+K               
Sbjct: 199 KDLREIVLDEYKPVEEVKQKFVKVRNDWNDKV--SKLLEEINGEKILVFART-------- 248

Query: 500 FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R    +   L +    ++ ++ G M    +      FK G   +L+AT +   GID++D
Sbjct: 249 -RDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATDLASRGIDIID 307

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            + +I  +        +H++ GR GR   +   I  Y    +       ++L 
Sbjct: 308 VNKVINFDIPRDVETYIHRV-GRTGRMGRVGQAITFYTFREADMIKRINNLLA 359


>gi|47206275|emb|CAF95815.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 586

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 129/365 (35%), Gaps = 35/365 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI 332
           PT  Q+ AI  I      K++   +     GSGKT   L+ + + +   G    +  I  
Sbjct: 163 PTPVQKYAIPII------KSKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGDALQAIKS 216

Query: 333 LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQY 392
             Q  Y         +++   ++ G      + + LER      H+++ T     D ++ 
Sbjct: 217 SGQFAYR--------SRVRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMER 264

Query: 393 YKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISK 447
            K+ L      ++DE  R          ++        M    I +T++ ++    +I  
Sbjct: 265 GKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDT--MPPKGIRQTMMFSATFPKEIQI 322

Query: 448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE-------EKKESNF 500
           +  +      I   +  +    E I +  V + E  K  ++   +               
Sbjct: 323 LA-RDFLEDYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVET 381

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           +   +           +   IHG  S  D+E  +  F++G C +L+AT V   G+D+ + 
Sbjct: 382 KKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNV 441

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLI 620
             +I  +        +H++ GR GR          ++   S  +   L +L   + G   
Sbjct: 442 KHVINFDLPSDIEEYVHRI-GRTGRVG-FCLATSFFNDKNSNITKDLLDLLVEAKQGIPT 499

Query: 621 AEEDL 625
             E L
Sbjct: 500 WLESL 504


>gi|323172286|gb|EFZ57923.1| ATP-independent RNA helicase dbpA [Escherichia coli LT-68]
          Length = 457

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 133/364 (36%), Gaps = 37/364 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATP 430
            T     D +Q           L++   D     G        +     +   L  +AT 
Sbjct: 128 ATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLRFSATW 187

Query: 431 IPRTLVLTSLGDIDISKITEKPAGR-KPIKTVIIPINRIDEV-IERLKVVLSEGKKAYWI 488
                V++     D   I         PI+      +   ++ + +  + L +       
Sbjct: 188 PEAIAVISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVF 247

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C       + + ++V +  N + +    S   +HG +   D++  +  F NG+ ++L+AT
Sbjct: 248 CNT-----KKDCQAVCDALNEVGQ----SALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+    +++           +H++ GR  R       I    P  ++ +    
Sbjct: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIIS 357

Query: 609 SVLK 612
            +L+
Sbjct: 358 DMLQ 361


>gi|320538877|ref|ZP_08038553.1| putative RNA helicase [Serratia symbiotica str. Tucson]
 gi|320031037|gb|EFW13040.1| putative RNA helicase [Serratia symbiotica str. Tucson]
          Length = 437

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 68/360 (18%), Positives = 122/360 (33%), Gaps = 37/360 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q  AI  +L           +     G+GKT    + +   +    Q        
Sbjct: 23  EPTPIQRQAIPMVLAGRD------LMASAQTGTGKTAGFTLPLLQLLSQHEQPAKGRRPV 76

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+I+ P   LA Q  E +  Y++  ++   ++ G +    +   L     G   I++ T
Sbjct: 77  RALILTPTRELAAQIGENVDAYSKYLRLRSLVVFGGVSINPQMMKLR----GGVDILVAT 132

Query: 383 HALFQD----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
                D    ++   K+ ++++DE  R      +           +L       + L+ +
Sbjct: 133 PGRLLDLEQNAVDLSKIEILVLDEADRMLDMGFIHDI------RRVLAKLPAKRQNLLFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +    DI  +  K     P    +   N   E IE+    + + +K   +   I      
Sbjct: 187 ATFSDDIKALANK-LLHNPASVEVARRNTASEQIEQSVYFVDKKRKRELLSQMIGAGDWK 245

Query: 499 NFRSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                       N L E         A IHG  S   +   +  FK G  ++L+AT +  
Sbjct: 246 QVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKEGKIRVLVATDIAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+D+     ++     +     +H++ GR GR E     I L      K       +LK
Sbjct: 306 RGLDIDQLPHVVNYELPNVPEDYVHRI-GRTGRAERTGEAISLVCVDEHKLLRDIERLLK 364


>gi|255071997|ref|XP_002499673.1| hypothetical protein MICPUN_106753 [Micromonas sp. RCC299]
 gi|226514935|gb|ACO60931.1| hypothetical protein MICPUN_106753 [Micromonas sp. RCC299]
          Length = 413

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 126/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---QAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFTKGLDV------IQQAQSGTGKTATFCAGVLQQLDYEKEECQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       +      G       ++ L+       H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLNVKCHACVGGTSVREDQRILQS----GVHVVVGTPGRVYD 171

Query: 389 SIQYYKLI--------LVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L         L   DE    G + ++    +   +   V + +AT  P  L +T
Sbjct: 172 MLRRRALKPDYIKIFSLDEADEMLSRGFKDQIYDIFQLLPSKLQVGVFSATMPPEALEIT 231

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + +++ +  ++ L          Y      +   
Sbjct: 232 RKFMTKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTL-------CDLYETLAITQSVI 284

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            +N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 285 FANTRRKVDWLTDKMRARDFTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 345 VQQVSLVINFDLPTQPENYLHRI-GRSGRFGRKGVAINFVTKD 386


>gi|167909652|ref|ZP_02496743.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           112]
          Length = 419

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 130/369 (35%), Gaps = 42/369 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
             + ++ PT  Q  AI  +L           +     G+GKT    + +   + A     
Sbjct: 17  NELGYTQPTPIQAQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHAFYAEN 70

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             I++ T     D +Q           L+L   D     G    +K  L +       LL
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLL 186

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L  + L    + ++  +    + I   I P++R  +      ++     
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNW 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  +         +    R          S   IHG  S   +   +  FK+ T +
Sbjct: 247 FQVLVFTRT--------KHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQ 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT +   GID+     ++  +  +     +H++ GR GR       + L      + 
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKQL 357

Query: 604 SYTRLSVLK 612
                 ++K
Sbjct: 358 LRDIERLIK 366


>gi|167737241|ref|ZP_02410015.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           14]
 gi|167822848|ref|ZP_02454319.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           9]
          Length = 414

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 130/369 (35%), Gaps = 42/369 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
             + ++ PT  Q  AI  +L           +     G+GKT    + +   + A     
Sbjct: 17  NELGYTQPTPIQAQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHAFYAEN 70

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             I++ T     D +Q           L+L   D     G    +K  L +       LL
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLL 186

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L  + L    + ++  +    + I   I P++R  +      ++     
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNW 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  +         +    R          S   IHG  S   +   +  FK+ T +
Sbjct: 247 FQVLVFTRT--------KHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQ 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT +   GID+     ++  +  +     +H++ GR GR       + L      + 
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKQL 357

Query: 604 SYTRLSVLK 612
                 ++K
Sbjct: 358 LRDIERLIK 366


>gi|331011364|gb|EGH91420.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 442

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 133/352 (37%), Gaps = 40/352 (11%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + +PT  Q  AI  +L           +     G+GKT    + +   +   G  
Sbjct: 16  LEALGYQTPTPVQTQAIPPVLAGRD------LMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+++AP   LA Q +E I++Y ++  +      G +    +   L +      
Sbjct: 70  VAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRK----GV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLTQK--ATAPHVLLM 426
            +++ T     D     ++++ +L  +I+DE  R    G  + L+            LL 
Sbjct: 126 DVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLF 185

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKP--IKTVIIPINRIDEVIERLKVVLSEGKK 484
           +AT      +L +    D   I   P       +K  ++ +++  +      + +   KK
Sbjct: 186 SATFSDEIRLLAAQMLNDPLTIGVSPRNVAASSVKQWVVTVDKKRKA----DLFIHLMKK 241

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
             W    +  K       +V+R   L      +   IHG      ++  +D FK+   K+
Sbjct: 242 HRWGQVLVFAKTRVGVDQLVDRLQGL----GLNADGIHGDKPQATRQRALDRFKSNEVKI 297

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           L+AT V   G+D+ D   ++  +        +H++ GR GR       I L 
Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGLTGEAISLV 348


>gi|225446899|ref|XP_002284103.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 666

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 131/358 (36%), Gaps = 40/358 (11%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---------GGQAV 325
             Q + ++  +Q          I +   G+GKTL   I +   V              A+
Sbjct: 140 PIQRAVLEPAMQGRD------MIGRARTGTGKTLAFGIPIMDKVIQYNAKHGRGRNPLAL 193

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA+Q  +   +      +    + G  P + +  +L+        +++GT   
Sbjct: 194 VLAPTRELARQVEKEFCESA--PNLDTLCVYGGTPISRQMNSLDY----GVDVVVGTPGR 247

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D I+   L L  V     DE  +       +  +      ++L       ++++ ++ 
Sbjct: 248 IIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVE------MILEKLPQNRQSMMFSAT 301

Query: 441 GDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEK---- 495
               I K+T+K         ++   + ++ E I    +     +KA  + P I E     
Sbjct: 302 MPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITEHAKGG 361

Query: 496 KESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           K   F       + L            +HG +S   +E  +  F++G   +L+AT V   
Sbjct: 362 KCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAAR 421

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           G+D+ +  +II     +     +H+  GR GR  +  + IL+Y    ++        +
Sbjct: 422 GLDIPNVDLIIHYELPNSSEIFVHR-SGRTGRAGKKGTAILIYAEQQARTVRFIERDI 478


>gi|212542881|ref|XP_002151595.1| DEAD/DEAH box RNA helicase [Penicillium marneffei ATCC 18224]
 gi|210066502|gb|EEA20595.1| DEAD/DEAH box RNA helicase [Penicillium marneffei ATCC 18224]
          Length = 1207

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 140/379 (36%), Gaps = 47/379 (12%)

Query: 265 ILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--- 320
           ++  + +  PT  Q  A+  I+           I     GSGKT+  L+ M   ++    
Sbjct: 589 VISKLGYEHPTSIQSQALPAIMSGRDV------IGVAKTGSGKTVSFLLPMFRHIKDQRP 642

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                G  ++IM P   LA Q ++  K + +   +      G  P   +   L+R     
Sbjct: 643 LENMEGPISLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKR----G 698

Query: 376 AHIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMT 427
           A I++ T     D +           ++  V++DE  R           K          
Sbjct: 699 AEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMTNIR---- 754

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             P  +T++ ++    ++  +  K    KP++ ++   + +   I ++  V +E  K   
Sbjct: 755 --PNKQTVLFSATFPRNMEALARKTL-IKPVEIIVGGRSVVAPEITQIVEVRNENTKFLR 811

Query: 488 ICPQI---------EEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMD 535
           +   +         E+ +   F    E  +SL             IHG    ID++S ++
Sbjct: 812 LLELLGNLYSDEANEDARTLIFVDRQEAADSLLRELMRKGYPCMSIHGGKDQIDRDSTIE 871

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            FK G   +LIAT+V   G+DV    +++  +A +     +H+  GR GR     + +  
Sbjct: 872 DFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR-AGRTGRAGNTGTAVTF 930

Query: 596 YHPPLSKNSYTRLSVLKNT 614
                 + S      LK +
Sbjct: 931 LTEDQERYSVDIAKALKQS 949


>gi|157148730|ref|YP_001456049.1| ATP-dependent RNA helicase DeaD [Citrobacter koseri ATCC BAA-895]
 gi|157085935|gb|ABV15613.1| hypothetical protein CKO_04559 [Citrobacter koseri ATCC BAA-895]
          Length = 649

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 78/416 (18%), Positives = 152/416 (36%), Gaps = 52/416 (12%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++     
Sbjct: 38  LNDLGYEKPSPIQAECIPHLLGGRDV------LGMAQTGSGKTAAFSLPLLNNLDPELKA 91

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 92  PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG----QRYDVQLRALRQGPQIVV 147

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S +T +P   +   TV     R +E +  ++ + +E   
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEAL--VRFLEAEDFD 263

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +
Sbjct: 264 AAIIFVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDI 315

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 316 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 374

Query: 605 YTRLSVLKNTEDGFLIAEEDL---KQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
                 +K T     I E +L   +   +  +         +   +  + + +LL 
Sbjct: 375 RNIERTMKLT-----IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLA 425


>gi|308389528|gb|ADO31848.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha710]
          Length = 457

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 127/374 (33%), Gaps = 46/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q +AI   L           +     G+GKT   ++     +++   A        
Sbjct: 26  PTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKSYATASTSPAMHP 79

Query: 325 ---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++ P   LA Q  + ++ Y +N  +   ++ G M    +   L         I++ 
Sbjct: 80  VRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTADLRAGCE----IVVA 135

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-- 429
           T     D ++           ++L   D     G     R  +         LL +AT  
Sbjct: 136 TVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSATFS 195

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              R L    +   +  ++  +      ++  II ++ I +     ++++        + 
Sbjct: 196 APIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQVIVF 255

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +  V+R          S   IHG  S   +   +++FK+G  ++L+AT 
Sbjct: 256 --------CKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLVATD 307

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   G+D+ +   +I           +H++ GR GR       I L    + ++      
Sbjct: 308 IAARGLDIAELPFVINYEMPAQPEDYVHRI-GRTGRAGADGVAISL----MDESEQKMFE 362

Query: 610 VLKNTEDGFLIAEE 623
            +K      L+ E 
Sbjct: 363 SIKELTGNKLLIER 376


>gi|281346961|gb|EFB22545.1| hypothetical protein PANDA_001614 [Ailuropoda melanoleuca]
          Length = 765

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 143/423 (33%), Gaps = 72/423 (17%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---------AGGQAV 325
             Q      +            I Q   G+GKT    I +   ++            Q +
Sbjct: 184 PIQAKTFHHVYSGKD------LIAQARTGTGKTFSFAIPLIEKLQGEMQDRKRGRAPQVL 237

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q        T+     V    G  P   +   +ER+ +G   I++GT   
Sbjct: 238 VLAPTRELANQVSRDFSDITRKLA--VACFYGGTPYGGQ---IERMRNG-IDILVGTPGR 291

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +D +Q  KL        +L  VD+    G   +++              +   P+TL+ 
Sbjct: 292 IKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKD----SEDNPQTLLF 347

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIE-- 493
           ++     +  + +K       +  +I        I  E L +     ++A  I   I   
Sbjct: 348 SATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVY 407

Query: 494 ---EKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                +   F    +    L ++ +       +HG +    +E  +  F+NG   +L+AT
Sbjct: 408 SGFHGRTIIFCETKKEAQELSQNVSIKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVAT 467

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +  +++  +      + +H+  GR GR      CI  Y            
Sbjct: 468 NVAARGLDIPEVDLVVQSSPPKDVESYIHR-SGRTGRAGRTGICICFY------------ 514

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
                 ++ + +A+             ++Q    KF          +++ + KDA  +L 
Sbjct: 515 ----QHKEEYQLAQ-------------VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLD 557

Query: 669 QDP 671
             P
Sbjct: 558 SVP 560


>gi|297735665|emb|CBI18352.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 78/480 (16%), Positives = 165/480 (34%), Gaps = 49/480 (10%)

Query: 189 IEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFK 248
           +++   QK+    + + F++  +    +        R+   + E          + +  +
Sbjct: 151 MDRPQRQKEQAAELYDTFDMRVDRHWTEKKLEEMTERDWRIFREDFNVSYKGSKIPRPMR 210

Query: 249 KEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTL 308
             +   ++   ++ + + R    +P+  Q +AI   LQ      +   I   + GSGKT 
Sbjct: 211 SWVESKLSP--ELLKAVERAGYKTPSPIQMAAIPLGLQ------QRDVIGIAETGSGKTA 262

Query: 309 VALIAMAAAV-----------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357
             ++ M   +             G  AV+MAP   LAQQ  +   K+     I V  I G
Sbjct: 263 AFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVG 322

Query: 358 NMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQ 409
                 +   + +       ++I T     D ++           ++L   D     G +
Sbjct: 323 GQSIEEQGFRIRQGCE----VVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFE 378

Query: 410 QRLKLTQKATAPHVL--------LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV 461
            ++     A     L        L        T + ++     + ++  K   R P+   
Sbjct: 379 PQVVGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYL-RNPVVVT 437

Query: 462 IIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSVVERFNSLHEHFT 515
           I    +  ++I +  +++   +K   +   ++E  +       N +   +      +   
Sbjct: 438 IGTAGKATDLITQHVIMVKGSEKMPKLQKLLDELGDKTAIVFINTKKSTDTLAKGLDKAG 497

Query: 516 SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQ 575
             +  +HG  S   +E  ++ F+     +L+AT V   GID+ D + +I  +        
Sbjct: 498 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMY 557

Query: 576 LHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF--LIAEEDLKQRKEGEI 633
            H++ GR GR  +            S   Y    +L  +       +A  +  + K G I
Sbjct: 558 THRI-GRTGRAGKTGVATTFLTLHDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSI 616


>gi|240850851|ref|YP_002972251.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup]
 gi|240267974|gb|ACS51562.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup]
          Length = 460

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 76/362 (20%), Positives = 136/362 (37%), Gaps = 43/362 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            P   QE AI  +L+          +     GSGKTL   + + + + A          +
Sbjct: 29  KPKPIQEQAIPVMLKGHD------ILGVAQTGSGKTLAFGLPILSQILALGDKRCPKTAR 82

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   LA Q  E I+   +   +   +I G + +  + K +E        ++I T 
Sbjct: 83  ALILAPTRELAVQIDETIRTAAKGAHLSTCLIFGGVSRLKQIKRMEA----GVDVLIATP 138

Query: 384 ALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPR 433
              +D ++           LIL   D     G    +K   K         L +AT    
Sbjct: 139 GRLKDLVREKCVDLSQSRFLILDEADRMLDMGFIHDVKQIAKLLHQERQTALFSATMPRE 198

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERLKVVLSEGKKAYWIC 489
             VL      D  KI   P G   ++       +P N    V+   K++ +    +  + 
Sbjct: 199 IAVLAKCLLNDPVKIEVVPQGTTAVEICQKLYCVPTNEKKNVL--SKLLTNPAFNSVIVF 256

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +   +S  RS              S+A IHG  S   ++S + +F+  + ++L+AT 
Sbjct: 257 TRTKHGADSVTRS--------LAKIGYSVATIHGNKSQGARQSALKAFRERSVQILVATD 308

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   GID+   S +I  +      + +H++ GR GR       + L+   + +     + 
Sbjct: 309 IAARGIDIPGISHVINYDLPDEAESYVHRI-GRTGRNGASGEALTLFDEKIERERLRAIE 367

Query: 610 VL 611
            L
Sbjct: 368 RL 369


>gi|167718208|ref|ZP_02401444.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           DM98]
          Length = 434

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 130/369 (35%), Gaps = 42/369 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
             + ++ PT  Q  AI  +L           +     G+GKT    + +   + A     
Sbjct: 17  NELGYTQPTPIQAQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHAFYAEN 70

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             I++ T     D +Q           L+L   D     G    +K  L +       LL
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLL 186

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L  + L    + ++  +    + I   I P++R  +      ++     
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNW 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  +         +    R          S   IHG  S   +   +  FK+ T +
Sbjct: 247 FQVLVFTRT--------KHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQ 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT +   GID+     ++  +  +     +H++ GR GR       + L      + 
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKQL 357

Query: 604 SYTRLSVLK 612
                 ++K
Sbjct: 358 LRDIERLIK 366


>gi|19075484|ref|NP_587984.1| U5 snRNP-associated protein Prp28 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74654533|sp|Q9Y7T7|PRP28_SCHPO RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|4539604|emb|CAB40015.1| U5 snRNP-associated protein Prp28 (predicted) [Schizosaccharomyces
           pombe]
          Length = 662

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 69/385 (17%), Positives = 132/385 (34%), Gaps = 59/385 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
            P+  Q +AI  +LQ      R   I   + GSGKT   +I +  A+             
Sbjct: 271 EPSSIQRAAIPVLLQ------RKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHL 324

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  AV++AP   LAQQ      K+ +        + G      +           AHI++
Sbjct: 325 GPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQ----SFQMSQGAHIVV 380

Query: 381 GTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLT----------------- 415
            T     D ++           +++   D     G +  +                    
Sbjct: 381 ATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSIL 440

Query: 416 ----QKATAPHVLLMTATPIPR--TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRID 469
                 ++    ++ +AT  PR   L  + L +  +  I         ++  +  I+   
Sbjct: 441 ATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDS 500

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           +   R++ +L   + +  I   +      N +  +E               +HG  S   
Sbjct: 501 KKWRRVEEILESNRFSPPIIIFV------NLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQ 554

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E  ++  +N T  +L+AT +   GID+ + S+++  N         H++ GR GR  + 
Sbjct: 555 RERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRI-GRTGRAGKS 613

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNT 614
            + I    P  +   Y    +L  +
Sbjct: 614 GTAITFLGPEDTDVYYDLRVLLSRS 638


>gi|26991447|ref|NP_746872.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986522|gb|AAN70336.1|AE016675_6 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 443

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 131/344 (38%), Gaps = 37/344 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQ 323
           +PT  Q  AI  +L           +     G+GKT    + +   +            +
Sbjct: 23  TPTPVQAKAIPAVLAGRD------LMAAAQTGTGKTAGFALPVLQRLALEGEKVASNSIR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++ P   LA+Q +  +++Y +N  +    + G +    +   L R       +++ T 
Sbjct: 77  ALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMRLRR----GVDLLVATP 132

Query: 384 ALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D     ++++ ++  +++DE  R        L          +  A P  R  +L 
Sbjct: 133 GRLLDLFRQNAVKFNQVQTLVLDEADRM-------LDLGFAEELQSVYAALPRKRQTLLF 185

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           S    D  ++    A   P+   + P N     +++  V + + +KA   C  + +++  
Sbjct: 186 SATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLLRKQRWK 245

Query: 499 N---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
               F       + L E   +   +   IHG      ++  +DSFK    ++L+AT V  
Sbjct: 246 QVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVATDVAA 305

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
            G+D+ D  +++  +        +H++ GR GR       I L 
Sbjct: 306 RGLDIDDLPLVVNLDLPIVAEDYVHRI-GRTGRAGNKGEAISLV 348


>gi|320158479|ref|YP_004190857.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus MO6-24/O]
 gi|319933792|gb|ADV88655.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus MO6-24/O]
          Length = 459

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 147/423 (34%), Gaps = 60/423 (14%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + ++  T  Q  ++  +L           I QG  GSGKT    + + + +      
Sbjct: 18  LDTLGYTEMTPIQAQSLPLVLAGKDV------IGQGKTGSGKTATFSLGLLSNLNVSRFR 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 72  VQSLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEH----GAHILV 127

Query: 381 GTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATP 430
           GT     D +        +   L+L   D     G Q  +        T    LL +AT 
Sbjct: 128 GTPGRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDAAPTQRQTLLFSATF 187

Query: 431 IPR--TLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
             +  T+    + + ++ K+  T + +  +     +      D  +E   ++    +   
Sbjct: 188 PEQIETIASKVMQNPEMVKVESTHQKSTIEQRFYQLESTEERDNALEA-LLLTHRPESTV 246

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C   +E +         RF         S+  +HG M   ++E  +  F N +  +L+
Sbjct: 247 VFCNTKKEVQNVTDELNHRRF---------SVIELHGDMEQRERERALTMFANKSISILV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV +   +I           +H++ GR GR       I  +          
Sbjct: 298 ATDVAARGLDVDNLDAVINFELSRDPEVHVHRI-GRTGRAGAKGIAISFFSEKELYRVER 356

Query: 607 RLSVLK-----------NTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLI 646
               +                 +  +   ++           G+ILG   K++G+   LI
Sbjct: 357 IEEYMGIDVHPAKLPQPENSKPYYPSMRTIQILGGKKQKVRAGDILGSLTKEAGIDGKLI 416

Query: 647 AQP 649
            + 
Sbjct: 417 GKI 419


>gi|255561546|ref|XP_002521783.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223538996|gb|EEF40593.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 714

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 139/397 (35%), Gaps = 47/397 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----------EA 320
            P+  Q +AI   LQ      +   I   + GSGKT   ++ M   +             
Sbjct: 316 KPSPIQMAAIPLGLQ------QRDVIGIAETGSGKTAAFVLPMLTYISRLPPMSEDNEAE 369

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  AV+MAP   LAQQ  +   K+     I V  I G      +   + +       ++I
Sbjct: 370 GPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCE----VVI 425

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVL-------- 424
            T     D ++           ++L   D     G + ++     A     L        
Sbjct: 426 ATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEE 485

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           L        T + ++     + ++  K   R P+   I    +  ++I +  +++ E +K
Sbjct: 486 LDEKKIYRTTYMFSATMPPAVERLARKYL-RNPVVVNIGTAGKATDLISQHVIMVKESEK 544

Query: 485 AYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
            + +   ++E  +       N +   +      +     +  +HG  S   +E  ++ F+
Sbjct: 545 FFKLQRLLDEAGDKTAIVFVNTKKNADTVAKNLDKAKYRVTTLHGGKSQEQREISLEGFR 604

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
                +L+AT V   GID+ D + +I  +         H++ GR GR  +          
Sbjct: 605 TKKYTVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRI-GRTGRAGKSGVATTFLTL 663

Query: 599 PLSKNSYTRLSVLKNTEDGF--LIAEEDLKQRKEGEI 633
             +   Y    +L  +       +A+ +  + K G I
Sbjct: 664 HDTDVFYDLKQMLVQSNSHVPPELAKHEASKFKPGTI 700


>gi|254480404|ref|ZP_05093651.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214038987|gb|EEB79647.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 429

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 126/343 (36%), Gaps = 39/343 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQAV 325
           T  Q+ AI  +L+          +     G+GKT    + +   +++          + +
Sbjct: 25  TPIQQQAIPLVLKGKDV------LAGAQTGTGKTAGFTLPVLQRLQSSHAEGQKRHPRVL 78

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q +E ++ Y +       +I G +    +++ L +       +++ T   
Sbjct: 79  VLTPTRELAAQVHESVRDYGRFLPFRSAVIFGGVSINPQKQKLIK----GVDVVVATPGR 134

Query: 386 FQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT--PIPR 433
             D +Q           L+L   D     G     R  L         LL +AT     +
Sbjct: 135 LLDHLQQRSIDLSKVEVLVLDEADRMLDMGFIRDIRKVLNAIPKKRQTLLFSATFSKEIK 194

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           +L    L      ++T +    + +  ++ P+++  +     + +  E  +   +  + +
Sbjct: 195 SLAAEFLHQPTEIQVTPQNTAAELVSQIVYPVDKKRKRELLSQKIGEENWQQVLVFTRTK 254

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                      +    L +   +S AI HG  S   +   + +FK G+ ++L+AT +   
Sbjct: 255 HGA-------NKLSEQLGKDGITSAAI-HGNKSQGARTKALANFKQGSVRVLVATDIAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           GID+     ++     +     +H++ GR  R  +    + L 
Sbjct: 307 GIDIDKLPHVVNFELPNVAEDYVHRI-GRTARAGQEGHAVSLV 348


>gi|145974735|gb|ABQ00071.1| VASA [Fenneropenaeus chinensis]
          Length = 712

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 126/362 (34%), Gaps = 49/362 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----------- 321
           PT  Q+  I ++   M+ ++ M        GSGKT   L+ M   +              
Sbjct: 293 PTPVQKYTIPNV---MNGRDIM---GCAQTGSGKTAAFLLPMLHHILDNNCPSNAFEEPA 346

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               +++ P   LA Q     +K++ ++     +  G     H  K +    H   HI++
Sbjct: 347 QPTGLVICPTRELAIQIMREARKFSHSSVAKCCVAYGGAAGFHHLKTI----HSGCHILV 402

Query: 381 GTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRL--------KLTQKATAPHVLLMT 427
            T     D ++     +  L  +++DE  R      L          T   TA  + LM 
Sbjct: 403 ATPGRLLDFVEKGKIVFSSLKYLVLDEADRMLDMGFLSSIKTVINHKTMTPTADRITLMF 462

Query: 428 ATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVII---PINRIDEVIERLKVVLSE 481
           +   P   + L    L +     +    A    +K  ++      +  +++E  + +L  
Sbjct: 463 SATFPNEIQELASAFLNNYLFVVVGSVGAANTDVKQEVLCVPKFEKKAKLVEMCEEILIN 522

Query: 482 GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGT 541
                 I   +E+K+ ++F        +           +HG      +E  +  F+ G 
Sbjct: 523 ADD-EKILVFVEQKRVADF------VGTYLCEKNFRATTMHGDRYQAQREQALTDFRTGV 575

Query: 542 CKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLS 601
             +L+AT V   G+D+    +++  +        +H++ GR GR       I  Y     
Sbjct: 576 FNILVATAVAARGLDIKGIGVVVNYDLPKEIDEYVHRI-GRTGRLGNRGLSISFYDEEAD 634

Query: 602 KN 603
             
Sbjct: 635 VC 636


>gi|325297782|ref|YP_004257699.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324317335|gb|ADY35226.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 418

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 126/366 (34%), Gaps = 38/366 (10%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + F   T  QE  I  IL+          I     G+GKT   L+ +   +  GG  
Sbjct: 16  LDAMNFKECTPVQEQTIPVILEGRD------LIGVAQTGTGKTAAYLLPVINQLSKGGYP 69

Query: 323 ----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                 VIMAP   LAQQ  + ++ ++    +    I G        +  + +  G A +
Sbjct: 70  ADAINCVIMAPTRELAQQIDQQMEGFSYFMPVSSVAIYGGNDGIRFEQEKKGLTLG-ADV 128

Query: 379 IIGTHALFQDS-----IQYYKLILVIVDEQHRF-----GVQQRLKLTQKATAPHVLLMTA 428
           +I T            +   K+   I+DE  R             +         ++ +A
Sbjct: 129 VIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLPKERQTIMFSA 188

Query: 429 TPI--PRTLVLTSLGDIDISKIT-EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           T     + L  + L D    K+   KPA +      I    +   +IE L       +  
Sbjct: 189 TMPAKIQQLAQSILHDPAEVKLAVSKPADKIIQAAYICYEAQKLGIIESLFRQQEPERVI 248

Query: 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
            +          ++ +  V+      +    ++  +H  +    ++ +M  F+NG   +L
Sbjct: 249 IF----------ASSKLKVKEVTKALKRLKLNVGEMHSDLEQSQRDEIMHEFRNGRINML 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT ++  GID+ D  ++I  +  H     +H++ GR  R       I            
Sbjct: 299 VATDIVARGIDIDDIRLVINYDVPHDSEDYVHRI-GRTARANNDGCAITFVSENEQTRFK 357

Query: 606 TRLSVL 611
                L
Sbjct: 358 QIEDFL 363


>gi|323185489|gb|EFZ70850.1| ATP-independent RNA helicase dbpA [Escherichia coli 1357]
          Length = 437

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 130/358 (36%), Gaps = 36/358 (10%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIM 327
            + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A     QA+++
Sbjct: 4   LTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 57

Query: 328 APIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P   LA Q    +++  +      +  + G  P   +R +L+       HII+ T    
Sbjct: 58  CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIVATPGRL 113

Query: 387 QDSIQ--------YYKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATPIPRTLV 436
            D +Q           L++   D     G        +     +   LL +AT       
Sbjct: 114 LDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRYAPASRQTLLFSATWPEAIAA 173

Query: 437 LTSLGDIDISKITEKPAGR-KPIKTVIIPINRIDEV-IERLKVVLSEGKKAYWICPQIEE 494
           ++     D   I         PI+      +   ++ + +  + L +       C     
Sbjct: 174 ISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNT--- 230

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
             + + ++V +  N + +    S   +HG +   D++  +  F NG+ ++L+AT V   G
Sbjct: 231 --KKDCQAVCDALNEVGQ----SALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 284

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+    +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 285 LDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 341


>gi|313358754|gb|ADR51551.1| vasa-like protein variant 1 [Scylla paramamosain]
 gi|313358756|gb|ADR51552.1| vasa-like protein variant 2 [Scylla paramamosain]
 gi|313358758|gb|ADR51553.1| vasa-like protein variant 3 [Scylla paramamosain]
          Length = 632

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 75/385 (19%), Positives = 142/385 (36%), Gaps = 56/385 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----------- 321
           PT  Q+ +I  +   M+Q++ M        GSGKT   L+ M   +              
Sbjct: 217 PTPIQKYSIPIL---MNQRDLM---ACAQTGSGKTAAFLLPMLHYILENDIESHSFEDVA 270

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               +++AP   LA Q ++  +K++  T I    I G +    +   L R+     HIII
Sbjct: 271 QPVGLVLAPTRELAIQIFQEARKFSLQTVIKNSCIYGGVATNFQ---LRRMKEQGCHIII 327

Query: 381 GTHALF-----QDSIQYYKLILVIVDEQHRF----GVQQRLKLTQKATAP----HVLLMT 427
            T            I    L  ++ DE  R      +    KL      P     + +M 
Sbjct: 328 ATPGKLLFFLGMGKISLKSLKFLVFDEADRMLDLGFIDDMEKLVAHPDMPPKGERLTMMF 387

Query: 428 ATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +   P  +   +L  +D        +  A  K +   I+ + + ++  +  + + S    
Sbjct: 388 SATFPEEVQRCALRFLDNYLFLVAGQVGAANKDVCQTIVQVAKFEKRDKLAEYLRSFEDS 447

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              +   +E K++++F         L  +   S+ +  GR     +E  + +F++   ++
Sbjct: 448 QEKVLVFVEMKRQADFVGTY-----LSTNGFRSVTLHGGRY-QEQREEALSAFRSNQYRV 501

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----- 599
           L+AT+V   G+D+     +I  +        +H++ GR GR       +  Y P      
Sbjct: 502 LVATSVAARGLDIRGVGYVINYDLPKSADEYVHRI-GRTGRVGNRGQAVSFYDPEQDLNL 560

Query: 600 -------LSKNSYTRLSVLKNTEDG 617
                  L+       S L++  DG
Sbjct: 561 AKDLVRILTDAEQEVPSWLRSAADG 585


>gi|312131519|ref|YP_003998859.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311908065|gb|ADQ18506.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 408

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 80/416 (19%), Positives = 161/416 (38%), Gaps = 50/416 (12%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
              ++ + ++ +  PT  Q   +  +L        ++ I Q   G+GKT    I +   +
Sbjct: 10  PEIKRAIADLGYKKPTDIQYKVLPKVLAGED----IMGIAQ--TGTGKTAAFAIPVLHLL 63

Query: 319 EAGG-----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
            +       + ++M P   LAQQ  +  K   +NT++ +  + G+  Q  + KAL++   
Sbjct: 64  ASEKKSKSLRCLVMVPTHELAQQIADVFKSLAKNTRLKIMALYGSTDQEPQIKALQK--- 120

Query: 374 GQAHIIIGTHALFQD----------SIQYYKLILVIVDEQHRFGVQQRLKL--TQKATAP 421
               +++ T     D           I++  LIL   D     G  Q +     +     
Sbjct: 121 -GVDVLVTTPGRMFDLQAQGHLSLEDIKF--LILDEADRMLDLGFYQDIIDVKKRIPKRH 177

Query: 422 HVLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
             L  +AT   +   L  +++ +    +I+      K I   ++ ++  D+     +++ 
Sbjct: 178 QTLFFSATLDEKIKKLAYSTVKNAIRIQISPDDPVSKNIDHSVVMVSMEDKRFFLERMIT 237

Query: 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539
              ++   +  +         +   ER  +           +H   S I++++ ++SFK 
Sbjct: 238 ENPQQKIIVFVRT--------KVRAERVAAAMARVNIKTVTLHSDKSHIERKAALESFKK 289

Query: 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           G   +LIAT V   G+D+     +I  +        +H++ GR GRG +    +      
Sbjct: 290 GETWVLIATDVSARGVDIPLVEYVINYDLPDVAENYVHRI-GRTGRGTQKGKAV------ 342

Query: 600 LSKNSYTRLSVLKNTED--GFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHD 653
            S  S   L +L++ ED  G+ IA + L + +  E L         F     E+ D
Sbjct: 343 -SFCSDEELPLLESIEDYLGYTIASQTLSELEYQETLIFSNESSRTFKDVMKEIAD 397


>gi|223590230|sp|A5DQS0|DED1_PICGU RecName: Full=ATP-dependent RNA helicase DED1
          Length = 637

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 59/373 (15%), Positives = 129/373 (34%), Gaps = 43/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA------------------ 313
            PT  Q+ ++  +            +     GSGKT   L                    
Sbjct: 191 KPTPVQKYSVPIVASGRD------LMACAQTGSGKTGGFLFPVLSESYMNGPDAVPESQG 244

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
             ++ +    A++MAP   L  Q +E  KK++  + +   ++ G      + + L+R   
Sbjct: 245 AFSSHKVHPTALVMAPTRELVSQIFEEAKKFSYRSWVRPCVVYGGADIGTQIRNLDR--- 301

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T    +D ++  ++ L  +     DE  R          Q         M  
Sbjct: 302 -GCDLLVATPGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEP--QIRHIVQECDMPG 358

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++    DI  +  +   +  I   +  +    E I +  + + + +K   +
Sbjct: 359 VESRQTLMFSATFPRDIQMLA-RDFLKDYIFLSVGRVGSTSENITQKVLYVEDDEKKSVL 417

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +           +  + + +               IHG  S  ++E  + +FK+GT 
Sbjct: 418 LDLLSANDNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGTA 477

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ + S ++  +        +H++ GR GR   +      ++     
Sbjct: 478 PILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRI-GRTGRAGNVGIATAFFNRNNRN 536

Query: 603 NSYTRLSVLKNTE 615
                + +L    
Sbjct: 537 VVKGMIELLSEAN 549


>gi|254509500|ref|ZP_05121567.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221533211|gb|EEE36199.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 419

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 61/355 (17%), Positives = 123/355 (34%), Gaps = 27/355 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
            PT  Q  AI   L           +     G+GKTL   + +   + A          +
Sbjct: 24  QPTPIQNQAIPLALNGHD------ILGLAQTGTGKTLAFGLPLIDHLLAQPGKPAPKTAK 77

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+AP   L  Q  + ++  T+ T++ V  + G      +   L R       I++ T 
Sbjct: 78  ALILAPTRELVNQIADSLRGLTKKTKLRVATVVGGQSINKQIMFLSR----GTDILVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D ++   + L  V         Q L +        +     TP  +T++ ++    
Sbjct: 134 GRLIDLMERGAVDLSSVRHLVLDEADQMLDMGFIHALRRIAPELGTP-RQTMLFSATMPK 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------ 497
            + +++ +     P +  + P  +  + I +    + +  K   +   +    +      
Sbjct: 193 QMEELS-RAYLTNPQRVQVSPPGKAADKITQSIHFVEKPAKPAKLREILSADMDALTLVF 251

Query: 498 SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
           S  +   E+          + A IHG  S   ++  + +F+ G   +L+AT V   GID+
Sbjct: 252 SRTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEINILVATDVAARGIDI 311

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
              + +I  +        +H++ GR  R       I                ++K
Sbjct: 312 PGVAYVINYDLPEVPDNYVHRI-GRTARAGREGEAIAFCSAEEVDLLRQIQKLMK 365


>gi|190348962|gb|EDK41523.2| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 666

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 59/373 (15%), Positives = 129/373 (34%), Gaps = 43/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA------------------ 313
            PT  Q+ ++  +            +     GSGKT   L                    
Sbjct: 220 KPTPVQKYSVPIVASGRD------LMACAQTGSGKTGGFLFPVLSESYMNGPDAVPESQG 273

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
             ++ +    A++MAP   L  Q +E  KK++  + +   ++ G      + + L+R   
Sbjct: 274 AFSSHKVHPTALVMAPTRELVSQIFEEAKKFSYRSWVRPCVVYGGADIGTQIRNLDR--- 330

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T    +D ++  ++ L  +     DE  R          Q         M  
Sbjct: 331 -GCDLLVATPGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEP--QIRHIVQECDMPG 387

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++    DI  +  +   +  I   +  +    E I +  + + + +K   +
Sbjct: 388 VESRQTLMFSATFPRDIQMLA-RDFLKDYIFLSVGRVGSTSENITQKVLYVEDDEKKSVL 446

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +           +  + + +               IHG  S  ++E  + +FK+GT 
Sbjct: 447 LDLLSANDNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGTA 506

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ + S ++  +        +H++ GR GR   +      ++     
Sbjct: 507 PILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRI-GRTGRAGNVGIATAFFNRNNRN 565

Query: 603 NSYTRLSVLKNTE 615
                + +L    
Sbjct: 566 VVKGMIELLSEAN 578


>gi|167903972|ref|ZP_02491177.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           NCTC 13177]
          Length = 430

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 130/369 (35%), Gaps = 42/369 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
             + ++ PT  Q  AI  +L           +     G+GKT    + +   + A     
Sbjct: 17  NELGYTQPTPIQAQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHAFYAEN 70

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             I++ T     D +Q           L+L   D     G    +K  L +       LL
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLL 186

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L  + L    + ++  +    + I   I P++R  +      ++     
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNW 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  +         +    R          S   IHG  S   +   +  FK+ T +
Sbjct: 247 FQVLVFTRT--------KHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQ 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT +   GID+     ++  +  +     +H++ GR GR       + L      + 
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKQL 357

Query: 604 SYTRLSVLK 612
                 ++K
Sbjct: 358 LRDIERLIK 366


>gi|146413260|ref|XP_001482601.1| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 666

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 59/373 (15%), Positives = 129/373 (34%), Gaps = 43/373 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA------------------ 313
            PT  Q+ ++  +            +     GSGKT   L                    
Sbjct: 220 KPTPVQKYSVPIVASGRD------LMACAQTGSGKTGGFLFPVLSESYMNGPDAVPESQG 273

Query: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
             ++ +    A++MAP   L  Q +E  KK++  + +   ++ G      + + L+R   
Sbjct: 274 AFSSHKVHPTALVMAPTRELVSQIFEEAKKFSYRSWVRPCVVYGGADIGTQIRNLDR--- 330

Query: 374 GQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTA 428
               +++ T    +D ++  ++ L  +     DE  R          Q         M  
Sbjct: 331 -GCDLLVATPGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEP--QIRHIVQECDMPG 387

Query: 429 TPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL+ ++    DI  +  +   +  I   +  +    E I +  + + + +K   +
Sbjct: 388 VESRQTLMFSATFPRDIQMLA-RDFLKDYIFLSVGRVGSTSENITQKVLYVEDDEKKSVL 446

Query: 489 CPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
              +           +  + + +               IHG  S  ++E  + +FK+GT 
Sbjct: 447 LDLLSANDNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGTA 506

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ + S ++  +        +H++ GR GR   +      ++     
Sbjct: 507 PILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRI-GRTGRAGNVGIATAFFNRNNRN 565

Query: 603 NSYTRLSVLKNTE 615
                + +L    
Sbjct: 566 VVKGMIELLSEAN 578


>gi|330501389|ref|YP_004378258.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328915675|gb|AEB56506.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 632

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 128/366 (34%), Gaps = 42/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTAGFALPILERLFPAGHPDREQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q ++  K Y ++ + +   I G +    + +AL +       +
Sbjct: 77  PKQPRVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGMNPQVQALAK----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKK------VLARLPAQRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSKDITDLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
           +            +    R     +      A IHG  S   +   +  FK    ++L+A
Sbjct: 246 QGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKASKVRILVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVEEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKN 613
             + K 
Sbjct: 365 ERMTKQ 370


>gi|261204203|ref|XP_002629315.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis SLH14081]
 gi|239587100|gb|EEQ69743.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis SLH14081]
 gi|239614347|gb|EEQ91334.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis ER-3]
          Length = 804

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 81/396 (20%), Positives = 143/396 (36%), Gaps = 56/396 (14%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---- 318
            I+  + ++ P+  Q +AI   LQ+         I     GSGKT   L+ +   +    
Sbjct: 376 NIIEQVGYTDPSPIQRAAIPIALQNRD------LIGVAVTGSGKTAAFLLPLLVYIAELP 429

Query: 319 ---------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                      G  A+I+AP   LAQQ     KK++      V  I G      +  +L 
Sbjct: 430 RLDEFEWRRNDGPYAIILAPTRELAQQIELEAKKFSAPLGFNVVSIVGGHSLEEQAYSLR 489

Query: 370 RIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF------------------ 406
                 A III T     D I+     + +   VI+DE  R                   
Sbjct: 490 N----GAEIIIATPGRLVDCIERRMIVFSQCCYVIMDEADRMIDLGFEEPVNKILDALPV 545

Query: 407 -GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
              +   +  +   A    +       +T++ T+     + +I  K   R  I T+    
Sbjct: 546 TNQKPDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPPAVERIARKYLRRPAIVTIGNIG 605

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSI 518
             +D V +R++ +  E K+   +   +  ++         N +   +      ++   S 
Sbjct: 606 EAVDTVEQRVEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGYSS 665

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG  +   +E+ + S +NG   +L+AT +   GIDV D S+++  N         H+
Sbjct: 666 VTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIENYTHR 725

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           + GR GR  +    I       S   Y    +L  +
Sbjct: 726 I-GRTGRAGKSGIAITFLGNEDSDVLYDLKQMLMKS 760


>gi|222624792|gb|EEE58924.1| hypothetical protein OsJ_10575 [Oryza sativa Japonica Group]
          Length = 696

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 159/447 (35%), Gaps = 49/447 (10%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI--- 269
              KDF    P+   ++  E+     +L +    F     I    +     +++  I   
Sbjct: 104 PFNKDFYEEKPSVSGMSEQEVADYMKSLAIRVSGFDVPRPIKSFADCGFPVQLMNAIAKQ 163

Query: 270 PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EA 320
            +  PT  Q  A+  +L           I     GSGKT   ++ M   +        E 
Sbjct: 164 GYEKPTTIQCQALPIVLSGRD------IIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEE 217

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G   V+ AP   LA Q Y   KK+ +   + V  + G + +  + K L+        I+I
Sbjct: 218 GPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCE----IVI 273

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D ++   L +      ++DE  R          +             P  +TL
Sbjct: 274 ATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIR------PDRQTL 327

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICP---- 490
           + ++     + ++  +     PI+  +  +   +E I+++  VL    +K  W+      
Sbjct: 328 LFSATMPYKVERLA-REILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLPG 386

Query: 491 QIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            I++     F +   R + +          IA +HG      +   +  FK+G   +L+A
Sbjct: 387 MIDDGDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVA 446

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS--SCILLYHPPLSKNSY 605
           T V   G+D+     ++  +        +H++ GR GR  +    +  L+    +     
Sbjct: 447 TDVAARGLDIKSIKTVVNFDIAKEMDMHIHRI-GRTGRAGDKDGTAYTLITQKEVRFAGE 505

Query: 606 TRLSVLKNTED----GFLIAEEDLKQR 628
               ++   +D       +A +D + R
Sbjct: 506 LVHCLIAAGQDVPNELMDLAMKDGRFR 532


>gi|224000281|ref|XP_002289813.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220975021|gb|EED93350.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 466

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 127/388 (32%), Gaps = 65/388 (16%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA----------VEAGGQ 323
           T  Q  A+  +L           I +   G+GKTL   +               +E G  
Sbjct: 10  TPVQAKAMSPVLAGRDV------IGRSRTGTGKTLAFGMPALTRMVERAKEKGNLEQGRD 63

Query: 324 A------------VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERI 371
                        +++ P   LA+Q  + +    +   +      G +    + +AL + 
Sbjct: 64  GSTRMRKGRLPSMIVLCPTRELARQVEDELSAVCKPLGLFSSCFHGGVSYDPQARALRQ- 122

Query: 372 AHGQAHIIIGTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT------QK 417
                 +I+GT     D I    L        +L   DE    G  + +++       + 
Sbjct: 123 ---GVDVIVGTPGRVIDHIDRGNLDLSECDTVVLDEADEMLNMGFAEDVEVILEGVGSKN 179

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                 LL +AT  P    + S    D+  I           T     +R+   +    +
Sbjct: 180 REKTQCLLFSATTPPWVKEIGSHYQRDVLSID---------ITGEQTGSRVASTVRHTAI 230

Query: 478 VLSEGKKA------YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKE 531
            +  G  A        I    +    +  +   +   S     T S   IHG +    ++
Sbjct: 231 QVPFGADAKKAILEDIIALFGKTIVFTETKKEADELVSGSVFKTLSAQAIHGDIGQKQRD 290

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
           + + +F+ G   +L+AT V   GID+ D  ++I           +H+  GR GR      
Sbjct: 291 ATLAAFRAGAFNVLVATDVAARGIDIKDVDLVIQFEPPRDVDTYVHR-SGRTGRAGASGI 349

Query: 592 CILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            +LL+       +   + + K+   GF 
Sbjct: 350 SVLLFQQ---NQARDIVRIEKSLGHGFK 374


>gi|161501867|ref|NP_762119.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6]
 gi|319999566|gb|AAO07109.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6]
          Length = 459

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 148/423 (34%), Gaps = 60/423 (14%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + ++  T  Q  ++  +L           I QG  GSGKT    + + + +      
Sbjct: 18  LDTLGYTEMTPIQAQSLPLVLDGKDV------IGQGKTGSGKTATFALGLLSNLNVSRFR 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 72  VQSLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEH----GAHILV 127

Query: 381 GTHALFQDSI--------QYYKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATP 430
           GT     D +        +   L+L   D     G Q      +    T    LL +AT 
Sbjct: 128 GTPGRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDVAPTQRQTLLFSATF 187

Query: 431 IPR--TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL--SEGKKAY 486
             +  T+    + + ++ K+ E    +  I+     +   +E    L+ +L     +   
Sbjct: 188 PEQIETIASKVMQNPEMVKV-ESTHQKSTIEQRFYQLENTEERDNALEALLLTHRPESTV 246

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C   +E +         RF         S+  +HG M   ++E  +  F N +  +L+
Sbjct: 247 VFCNTKKEVQNVTDELNHRRF---------SVIELHGDMEQRERERALTMFANKSISILV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV +   +I           +H++ GR GR       I  +          
Sbjct: 298 ATDVAARGLDVDNLDAVINFELSRDPEVHVHRI-GRTGRAGAKGIAISFFSEKELYRVER 356

Query: 607 RLSVLK-----------NTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLI 646
               +                 +  +   ++           G+ILG   K++G+   LI
Sbjct: 357 IEEYMGIDVHPAKLPQPENPKPYYPSMRTIQILGGKKQKVRAGDILGSLTKEAGIDGKLI 416

Query: 647 AQP 649
            + 
Sbjct: 417 GKI 419


>gi|23501038|ref|NP_697165.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|254705304|ref|ZP_05167132.1| DEAD-box ATP dependent DNA helicase [Brucella suis bv. 3 str. 686]
 gi|261756015|ref|ZP_05999724.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|23346903|gb|AAN29080.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
 gi|261745768|gb|EEY33694.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
          Length = 626

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 148/365 (40%), Gaps = 46/365 (12%)

Query: 272 SPTKSQESAI-KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGG 322
           + T  Q + +  + L           ++    GSGKT+   +AMA  +        +AG 
Sbjct: 22  TLTAVQNAVLAPETLAS-------DLLVSAQTGSGKTVAFGLAMANTILEDELRFGDAGA 74

Query: 323 Q-AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
             A+I+AP   LA Q    ++    +T   +    G M     R+ALER     +HI++G
Sbjct: 75  PLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRALER----GSHIVVG 130

Query: 382 THALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           T    +D I        Q   ++L   DE    G ++ L+           L  A    R
Sbjct: 131 TPRRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFI---------LGEAPEDRR 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           TL+ ++     I+++ ++        TV    ++  + I+ + + +   ++ + I   + 
Sbjct: 182 TLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHAD-IDYVAMPVPPHERDHAIINTLL 240

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                N       R  V+   S   +   ++  + G +S  ++ + + + ++G  ++ +A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +        LH+  GR GR     +C+L+      +++   
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHR-SGRTGRAGRKGTCVLVVPFSRRRSAERL 359

Query: 608 LSVLK 612
           L + K
Sbjct: 360 LHMAK 364


>gi|227536058|ref|ZP_03966107.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243955|gb|EEI93970.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 450

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 68/358 (18%), Positives = 143/358 (39%), Gaps = 31/358 (8%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGG--QAVIMA 328
           PT+ Q+ AI  +L        ++ I Q   G+GKT   ++ M   ++   G   +A+I++
Sbjct: 26  PTEIQQKAITPVLAG----QDIMGIAQ--TGTGKTAAFVLPMLMKLKYAQGKDMRALILS 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E I+ +++   +   ++ G +    + + LE+       II+ T   F D
Sbjct: 80  PTRELAMQIEEHIQLFSKYLDLRTVVLYGGLGPKTQIENLEK----GVDIIVATPGRFLD 135

Query: 389 -----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPIP--RTLV 436
                 I    L  +++DE  +      +    +           LL +AT     R + 
Sbjct: 136 LYLEGHINVKSLKFLVMDEADKMMDMGFISKIHRILEVVPRKRQNLLFSATMSELVRKIA 195

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
              L    + ++TE+    K ++  +  +      +  L+ +L + +  + +    + K 
Sbjct: 196 GDFLAFPTVIEVTEQATPAKTVQQAVYKVPNQKTKLNLLQHLLKDDESFHRLIVFCKTKT 255

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
            ++            ++ T  + +IH       + + +++FK G  ++L+AT V   G+D
Sbjct: 256 VADNVFHFLE----RKYGTEQVRVIHANKGQNTRINSINAFKEGNIRILVATDVAARGLD 311

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           V + S +I           +H++ GR GR       I   +P           +++ +
Sbjct: 312 VSNVSHVINFEVPIVIEDYVHRI-GRTGRAFNEGDAITFSNPAEEYYVRKIEKLIRQS 368


>gi|124267275|ref|YP_001021279.1| putative ATP-dependent RNA helicase 1 [Methylibium petroleiphilum
           PM1]
 gi|124260050|gb|ABM95044.1| putative ATP-dependent RNA helicase 1 [Methylibium petroleiphilum
           PM1]
          Length = 453

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 130/366 (35%), Gaps = 42/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q+ AI  ++           +     G+GKT   ++ M   + A           
Sbjct: 23  TPTPIQKQAIPAVMLG------GDLLAGAQTGTGKTAGFVLPMLHRLMARPAVKDARGKS 76

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q  E ++ Y ++ ++   ++ G +    +   L+R       I++
Sbjct: 77  PVRALILTPTRELAAQVEESVRIYGKHAKLSSMVMFGGVGMQPQIDRLKR----GVDILV 132

Query: 381 GTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK-----ATAPHVLLMTAT- 429
            T     D  Q   L L  V     DE  R      +   +K           LL +AT 
Sbjct: 133 ATPGRLLDHHQQRTLDLSHVEIFVLDEADRMLDMGFIHDIKKVLAIVPKQKQSLLFSATF 192

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               +TL    L    + ++  + +  + I   I P++R  +      ++ S+      +
Sbjct: 193 SDEIKTLADRLLNSPQVIEVARRNSTVETIAQKIHPVDRDKKKELLAHLIKSQDWHQVLV 252

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             +         +    R          +   IHG  S   +   +  FK+G  ++L+AT
Sbjct: 253 FCR--------MKHGANRLTEYLNDQRITAMAIHGNKSQTARTKALADFKSGALQVLVAT 304

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            +   GID+     ++     +     +H++ GR GR   +   + L             
Sbjct: 305 DIAARGIDIDQLPHVVNFELPNVSEDYVHRI-GRTGRAGALGEAVSLVCVDEDGFLRDIE 363

Query: 609 SVLKNT 614
            ++K +
Sbjct: 364 KLIKRS 369


>gi|226291622|gb|EEH47050.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28
           [Paracoccidioides brasiliensis Pb18]
          Length = 443

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 138/388 (35%), Gaps = 55/388 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            P+  Q +AI   LQ+         I     GSGKT   L+ +   +             
Sbjct: 24  DPSPIQRAAIPIALQNRD------LIGVAVTGSGKTAAFLLPLLVYIGELPRLDEFEWRR 77

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G  A+I+AP   LAQQ     KK++      V  I G      +  +L       A I
Sbjct: 78  NDGPYAIILAPTRELAQQIEIEAKKFSTPLGFNVVSIVGGHSLEEQAYSLRN----GAEI 133

Query: 379 IIGTHALFQDSIQYYKLILVI-----VDEQHRFGV-------------------QQRLKL 414
           II T     D I+   ++L       +DE  R                      +   + 
Sbjct: 134 IIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVANEKPDTED 193

Query: 415 TQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            +   A    +       +T++ T+     + +I  K   R  I T+      +D V +R
Sbjct: 194 AENPQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNVGEAVDTVEQR 253

Query: 475 LKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           ++ V  E K+   +   +  ++         N +   +      ++   S   +HG  + 
Sbjct: 254 VEFVSGEDKRKKRLAEILASREFRPPIIVFVNIKRNCDAVARDIKNMGYSSVTLHGSKTQ 313

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +E+ + S +NG   +L+AT +   GIDV D S+++  N      +  H++ GR GR  
Sbjct: 314 EQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRI-GRTGRAG 372

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +    I       S   Y    +L  + 
Sbjct: 373 KSGVAITFLGNEDSDVLYDLKQMLMKSS 400


>gi|47028621|gb|AAT09162.1| DEAD box protein AxVH [Ambystoma mexicanum]
          Length = 724

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 131/361 (36%), Gaps = 49/361 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
             T  Q+ +I  +L       R   +     GSGKT   L+ + A +   G         
Sbjct: 316 KLTPVQKYSIPIVLA------RRDLMACAQTGSGKTAAFLLPILAHLMQDGIPPPTSELQ 369

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             + +I+AP   L  Q +   +K+   T I   ++ G         +L +I  G  +I+ 
Sbjct: 370 EPEVIIVAPTRELINQIFLDARKFAYRTCIKPVVVYGGT---QTIHSLRQIYQG-CNILC 425

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKL------TQKATAPHVLLM 426
            T     D I+  K        L+L   D     G    +K                L+ 
Sbjct: 426 ATPGRLIDIIRREKIGLTKLRYLVLDEADRMLDMGFGPDMKTLVTSPGMPTKEERQTLMF 485

Query: 427 TATPIPRTLV----LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG 482
           +AT  P  +          D     + +       ++  I+ +++ ++  + ++++   G
Sbjct: 486 SAT-FPENIQSLAREFLKPDYLFVTVGQVGGACADVQQKILEVDQYEKKDKLVEILQGLG 544

Query: 483 KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC 542
           K+   +            + + +   +L      S   IHG     ++E  +  F+ G C
Sbjct: 545 KERTMVFV--------GTKKMADYLTTLLCQENISATSIHGDRLQREREEALADFRFGKC 596

Query: 543 KLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSK 602
            +L+AT V   G+D+ +   +I  +        +H++ GR GR   +   I  +H   ++
Sbjct: 597 HVLVATNVAARGLDIENVQHVINYDLSDNIEEYVHRI-GRTGRCGNVGKAISFFHSNQNR 655

Query: 603 N 603
           +
Sbjct: 656 D 656


>gi|121599633|ref|YP_993994.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei
           SAVP1]
 gi|121228443|gb|ABM50961.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei
           SAVP1]
          Length = 473

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 130/369 (35%), Gaps = 42/369 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
             + ++ PT  Q  AI  +L           +     G+GKT    + +   + A     
Sbjct: 5   NELGYTQPTPIQAQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHAFYAEN 58

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 59  RSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----G 114

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             I++ T     D +Q           L+L   D     G    +K  L +       LL
Sbjct: 115 VDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLL 174

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L  + L    + ++  +    + I   I P++R  +      ++     
Sbjct: 175 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNW 234

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  +         +    R          S   IHG  S   +   +  FK+ T +
Sbjct: 235 FQVLVFTRT--------KHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQ 286

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT +   GID+     ++  +  +     +H++ GR GR       + L      + 
Sbjct: 287 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKQL 345

Query: 604 SYTRLSVLK 612
                 ++K
Sbjct: 346 LRDIERLIK 354


>gi|19698881|gb|AAL91176.1| eukaryotic translation initiation factor [Arabidopsis thaliana]
          Length = 412

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 61  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLA 114

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 115 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVFD 170

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 171 MLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 230

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + + + +  +E L          Y      +   
Sbjct: 231 RKFMSKPVRILVKRDELTVEGIKQFYVNVEKEEWKLETL-------CDLYETLAITQSVI 283

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 284 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 343

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 344 VQQVSLVINFDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRD 385


>gi|332030497|gb|EGI70185.1| Putative ATP-dependent RNA helicase DDX47 [Acromyrmex echinatior]
          Length = 448

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 127/341 (37%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMA 328
            PT+ Q+ AI   LQ          I   + GSGKT    + +  A+    Q   A+I+ 
Sbjct: 40  EPTRIQQEAIPLTLQGKDV------IGLAETGSGKTAAFALPILQALLENPQRYFALILT 93

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E       +  +   ++ G M    +   LE+    + HIII T     D
Sbjct: 94  PTRELAFQISEQFDALGSSIGVKTVVLVGGMDMHAQGMILEK----KPHIIIATPGRLVD 149

Query: 389 SIQ------YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
            ++        +L  +++DE        R+           +L       RTL+ ++   
Sbjct: 150 HLENTKGFNLRQLKFLVMDEAD------RILNMDFEVEVDKILRVIPRERRTLLFSATMT 203

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE------KK 496
             + K+ ++ + R P+K  +    +  E +++  + +    K  ++   + E        
Sbjct: 204 KKVQKL-QRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNSFMI 262

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                +   R   L  +   +   +HG+M+   + + +  FK     +LI+T V   G+D
Sbjct: 263 FCGTCNNTVRTALLLRNLGFTAVPLHGQMTQNKRIAALTKFKAKNRSILISTDVASRGLD 322

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           +    I+I  +        +H++ GR  R       I    
Sbjct: 323 IPHVDIVINFDIPTHSKDYIHRV-GRTARAGRSGRSITFVT 362


>gi|330804668|ref|XP_003290314.1| hypothetical protein DICPUDRAFT_95112 [Dictyostelium purpureum]
 gi|325079564|gb|EGC33158.1| hypothetical protein DICPUDRAFT_95112 [Dictyostelium purpureum]
          Length = 706

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 65/396 (16%), Positives = 133/396 (33%), Gaps = 60/396 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------------ 319
            PT  Q+SA+  I ++         +     GSGKT   L+ + + +             
Sbjct: 254 KPTPVQKSALPIIFKNRD------LMACAQTGSGKTAAFLLPIISGILLDGAPEPPASYK 307

Query: 320 ------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
                 A  +A+++AP   LAQQ Y    K++  + I   +I G    A     +  +  
Sbjct: 308 PGVPRAAAPRALVLAPTRELAQQIYNEANKFSYGSPIQSVVIYGG---AEVFNQINELDK 364

Query: 374 GQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRL------KLTQKAT 419
           G   I++ T     D +   +        L+L   D     G + ++           + 
Sbjct: 365 G-VDILVATTGRLVDLLLRGRVTLSKIKYLVLDEADRMLDMGFEPQIRQIIGDFDMPGSR 423

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKT----VIIPINRIDEVIERL 475
               L+ +AT   +   L S    +   +     G     T     +    +   +++ +
Sbjct: 424 DRQTLMFSATFPKQIQALASDFLSNYIFLKVGVVGTTQNITQRIEYVSEEEKNSYLLDYI 483

Query: 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMD 535
             +  +G                  +   +       +       IHG ++  ++E+ + 
Sbjct: 484 SGLNIDGALTLIFV---------ETKRSCDTLTFFLNNRGFPATCIHGDLTQSERENALH 534

Query: 536 SFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
           SF +     L+AT +   G+ + +  ++I  +        +H++ GR GR  +    I  
Sbjct: 535 SFSSFQTPFLVATDIASRGLHIPNVMVVINYDLPTDVHIYVHRI-GRTGRAGKKGLSISF 593

Query: 596 YHPPLSKNSYTRLSVLKNTE----DGFLIAEEDLKQ 627
           ++          L +LK +     D F      L+ 
Sbjct: 594 FNEKNKPVGGELLKLLKASNQEIPDWFEKMVHQLRL 629


>gi|293393148|ref|ZP_06637463.1| ATP-dependent RNA helicase DeaD [Serratia odorifera DSM 4582]
 gi|291424294|gb|EFE97508.1| ATP-dependent RNA helicase DeaD [Serratia odorifera DSM 4582]
          Length = 642

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 154/414 (37%), Gaps = 48/414 (11%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++A    
Sbjct: 22  LTDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLHNLDASLKA 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 76  PQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGG----QRYDVQLRALRQGPQIVV 131

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTAT- 429
           GT     D ++   L        +L   DE  R G  + +   + +        L +AT 
Sbjct: 132 GTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTALFSATM 191

Query: 430 -----PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
                 I R  +         S IT +P   +   T      R +E +  ++ + +E   
Sbjct: 192 PEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWT--AQGMRKNEAL--VRFLEAEDFD 247

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
           A  I  + +        + +E   +L     SS A+ +G M+   +E  ++  K+G   +
Sbjct: 248 AAIIFVRTKN-------ATLEVAEALERSGYSSAAL-NGDMNQALREQTLERLKDGRLDI 299

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNS 604
           LIAT V   G+DV   S+++  +      + +H++ GR GR       +L       +  
Sbjct: 300 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLL 358

Query: 605 YTRLSVLKNTEDGFLIA-EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
                 +K T     +   E L QR+  +     Q    +   +  +++ +LL 
Sbjct: 359 RNIERTMKLTIPEVELPNAELLGQRRLAKFAAKVQ---QQLESSDLDMYRALLA 409


>gi|327356974|gb|EGE85831.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 798

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 81/396 (20%), Positives = 143/396 (36%), Gaps = 56/396 (14%)

Query: 264 KILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---- 318
            I+  + ++ P+  Q +AI   LQ+         I     GSGKT   L+ +   +    
Sbjct: 370 NIIEQVGYTDPSPIQRAAIPIALQNRD------LIGVAVTGSGKTAAFLLPLLVYIAELP 423

Query: 319 ---------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALE 369
                      G  A+I+AP   LAQQ     KK++      V  I G      +  +L 
Sbjct: 424 RLDEFEWRRNDGPYAIILAPTRELAQQIELEAKKFSAPLGFNVVSIVGGHSLEEQAYSLR 483

Query: 370 RIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRF------------------ 406
                 A III T     D I+     + +   VI+DE  R                   
Sbjct: 484 N----GAEIIIATPGRLVDCIERRMIVFSQCCYVIMDEADRMIDLGFEEPVNKILDALPV 539

Query: 407 -GVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI 465
              +   +  +   A    +       +T++ T+     + +I  K   R  I T+    
Sbjct: 540 TNQKPDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPPAVERIARKYLRRPAIVTIGNIG 599

Query: 466 NRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSI 518
             +D V +R++ +  E K+   +   +  ++         N +   +      ++   S 
Sbjct: 600 EAVDTVEQRVEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGYSS 659

Query: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
             +HG  +   +E+ + S +NG   +L+AT +   GIDV D S+++  N         H+
Sbjct: 660 VTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIENYTHR 719

Query: 579 LRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           + GR GR  +    I       S   Y    +L  +
Sbjct: 720 I-GRTGRAGKSGIAITFLGNEDSDVLYDLKQMLMKS 754


>gi|313221076|emb|CBY31906.1| unnamed protein product [Oikopleura dioica]
          Length = 604

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 75/366 (20%), Positives = 133/366 (36%), Gaps = 39/366 (10%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGG 322
             PT  Q +AI  IL           I     GSGKT   +  +   V          G 
Sbjct: 250 LDPTPIQSTAIPQILAGRDV------IGIAQTGSGKTAGFVWPIIYHVTKQRPLKYGDGP 303

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            A+IMAP   L QQ Y  ++K+ +N   I V I  G +    + K L+        I++ 
Sbjct: 304 MALIMAPTRELCQQLYAEVRKFAKNYDSIRVGICFGGVNMYEQGKELKM----GVEILVA 359

Query: 382 THALFQDSI-----QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D +     +  K  ++ +DE  R          +             P  + L 
Sbjct: 360 TPGRLIDHVKKGNTELSKCTIICLDEADRMLELGFEPQVRSICNHVR------PDKQCLF 413

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     I ++  +     P+K     I +++E + +   +L + +K  W+   I +  
Sbjct: 414 FSATFKKVIERLATEVLN-DPVKLTQGQIGQVNENVTQNFKILGQDQKLQWLLGNIVQLN 472

Query: 497 ES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      ++     +   +       +IHG M   ++  V+ +FK      LIAT 
Sbjct: 473 SVGSLLVFVTRKADCVTVHEELKKSGFKTGVIHGDMHQAERNDVIKAFKRQQLATLIATD 532

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+     +I  +        +H++ GR  R     + I L  P  S+ +   L 
Sbjct: 533 VAARGLDISHIKTVINYDPARNYDTHVHRV-GRTARAGNTGTAISLLTPQDSEYAGIVLR 591

Query: 610 VLKNTE 615
            ++ T+
Sbjct: 592 SIETTK 597


>gi|225870075|ref|YP_002746022.1| DEAD box helicase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225699479|emb|CAW93007.1| DEAD box helicase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 538

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 127/341 (37%), Gaps = 34/341 (9%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMAPI 330
           +  QE  I   L+          I Q   G+GKT    +     +   +   QA+++AP 
Sbjct: 25  SPIQELTIPLALEGRDV------IGQAQTGTGKTAAFGLPTLNKIRTADNTIQALVIAPT 78

Query: 331 GILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI 390
             LA Q  E + ++ ++  + V  + G      + KAL+      AH+++GT     D I
Sbjct: 79  RELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALKS----GAHVVVGTPGRLLDLI 134

Query: 391 QYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTAT-PIP-RTLVLT 438
           +   L L  V        DE    G        +++       LL +AT P P + + + 
Sbjct: 135 KRKALRLDHVETLILDEADECLNMGFLEDIEAIISRVPDDRQTLLFSATMPAPIKEIGVK 194

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
            + D +  ++  K      +    + +   ++     +++  +  +   +  +       
Sbjct: 195 FMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVQQPELSIVFGRT------ 248

Query: 499 NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558
             +  V+      +        IHG +    +  V+  FKN    +L+AT V   G+D+ 
Sbjct: 249 --KRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVATDVAARGLDIS 306

Query: 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             + +   +      + +H++ GR GR  +    I    P 
Sbjct: 307 GVTHVYNYDITQDPESYVHRI-GRTGRAGKSGESITFVSPN 346


>gi|213966785|ref|ZP_03394936.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
 gi|301383294|ref|ZP_07231712.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato Max13]
 gi|302062467|ref|ZP_07254008.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato K40]
 gi|302133449|ref|ZP_07259439.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213928635|gb|EEB62179.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
          Length = 442

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 66/351 (18%), Positives = 132/351 (37%), Gaps = 38/351 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + +PT  Q  AI  +L           +     G+GKT    + +   +   G  
Sbjct: 16  LEALGYQTPTPVQTQAIPPVLAGRD------LMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+++AP   LA Q +E I++Y ++  +      G +    +   L +      
Sbjct: 70  VAPNSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRK----GV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +++ T     D     +I++ +L  +I+DE  R        L          +    P 
Sbjct: 126 DVLVATPGRLLDLYRQKAIRFSQLQTLILDEADRM-------LDLGFAEELRGIYAVLPK 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  ++        P+   + P N     +++  V + + +KA      
Sbjct: 179 QRQTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHL 238

Query: 492 IEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +++ +          R  V++     +    +   IHG      ++  +D FK+   K+L
Sbjct: 239 MKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKIL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +AT V   G+D+ D   ++  +        +H++ GR GR  +    I L 
Sbjct: 299 VATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGQTGEAISLV 348


>gi|118497423|ref|YP_898473.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida
           U112]
 gi|195536115|ref|ZP_03079122.1| dead/deah box helicase domain protein [Francisella tularensis
           subsp. novicida FTE]
 gi|118423329|gb|ABK89719.1| ATP-dependent RNA helicase [Francisella novicida U112]
 gi|194372592|gb|EDX27303.1| dead/deah box helicase domain protein [Francisella tularensis
           subsp. novicida FTE]
          Length = 441

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 126/346 (36%), Gaps = 36/346 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
            PT  Q  AI  +L+          +     G+GKT    + +   +    +A       
Sbjct: 23  KPTPIQAQAIPIVLKG------NDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQANRIKT 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I+ Y  NT I   +I G +    +   L +       I+I T  
Sbjct: 77  LILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK----GVEILIATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L   ++DE  R      +   +K    H LL       +TL+ ++
Sbjct: 133 RLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKK---IHKLL---PKKLQTLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I  +  +     P       +N   + I +    L +  K   +   I+++    
Sbjct: 187 TFSSEIKNLANEFLN-NPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  ++   + +    +   S + IHG  S   +   +  FK+    +L+AT +   
Sbjct: 246 VLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GID+     +I  +  +     +H++ GR GR  +    I L    
Sbjct: 306 GIDIAQLPCVINLDLPNVAEDYVHRI-GRTGRAGQEGLAISLVSAD 350


>gi|219114457|ref|XP_002176399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402645|gb|EEC42635.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 575

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 83/438 (18%), Positives = 150/438 (34%), Gaps = 58/438 (13%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI--- 269
           R     E     +  L+ +E     +  +      +     P              I   
Sbjct: 93  RSVDAAEEKEAGKSILSTEEWRKEHMISIQGHGSERATQTFPDPFMEFKDAPFQERIQQA 152

Query: 270 ----PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----- 319
                F+ PT  Q  A    LQ+         I     GSGKT   L+ +          
Sbjct: 153 FAQAGFARPTSIQGQAWPIALQNKD------MICVAKTGSGKTCGFLLPVFHQHLVKQTR 206

Query: 320 ----AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                    +++AP   L+ Q  E  +K+ +   I      G   +  +  AL+R     
Sbjct: 207 IQGFTKPILLVLAPTRELSVQILEEAQKFGRPLGIRSVCCYGGASKHPQIAALQR----G 262

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK---LTQKATAPHVL 424
              +I T     D I+  K        L+L   D     G + +++   L         L
Sbjct: 263 VECVIATPGRLNDLIEMRKADLSKVQYLVLDEADRMLDMGFEPQIRSIILNIPPENRQTL 322

Query: 425 LMTATPIPRTLVLT-----SLGDIDISKITEKPAGRKPIKTVII-PINRIDEVIERLKVV 478
           L +AT       L      +   I++ ++    A +   +T+++   +   + +E++   
Sbjct: 323 LFSATWPKEIQALAHDFLKNPIQINVGEVNALVANKDIQQTIVMCSESEKLDKLEQILRD 382

Query: 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
           L  GK   ++  +I         S  +  N L E   + +  +HG     ++  VM +FK
Sbjct: 383 LMHGKIIVFVAKKI---------SCNDLANRLWEDGFA-VDSLHGDRPQWERTRVMQAFK 432

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAE---HFGLAQLHQLRGRVGRGEEISSCILL 595
            G  ++LIAT V   G+DV D  +++  +     +     +H++ GR GR          
Sbjct: 433 GGQLRVLIATDVAARGLDVKDVGVVVNYDMPSGVNGVEDYVHRI-GRTGRAGNKGKAYTF 491

Query: 596 YHPPLSKNSYTRLSVLKN 613
           +     KN+   + VL  
Sbjct: 492 FTQGDRKNATQLVQVLTK 509


>gi|325132396|gb|EGC55089.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M6190]
 gi|325138385|gb|EGC60953.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           ES14902]
 gi|325142616|gb|EGC65008.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           961-5945]
 gi|325201879|gb|ADY97333.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240149]
 gi|325208368|gb|ADZ03820.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           NZ-05/33]
          Length = 457

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 127/374 (33%), Gaps = 46/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q +AI   L           +     G+GKT   ++     ++    A        
Sbjct: 26  PTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHP 79

Query: 325 ---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++ P   LA Q  + ++ Y +N  +   ++ G M    +   L         I++ 
Sbjct: 80  VRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCE----IVVA 135

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-- 429
           T     D ++           ++L   D     G     R  +         LL +AT  
Sbjct: 136 TVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATFS 195

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              R L    +   +  ++  +      ++  II ++ I +     ++++        + 
Sbjct: 196 APIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQVIVF 255

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +  V+R          S   IHG  S   +   +++FK+G+ ++L+AT 
Sbjct: 256 --------CKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATD 307

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   G+D+ +   +I           +H++ GR GR       I L    + ++      
Sbjct: 308 IAARGLDIAELPFVINYEMPAQPEDYVHRI-GRTGRAGADGVAISL----MDESEQKMFE 362

Query: 610 VLKNTEDGFLIAEE 623
            +K      L+ E 
Sbjct: 363 SIKELTGNKLLIER 376


>gi|326477553|gb|EGE01563.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           equinum CBS 127.97]
          Length = 812

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 135/388 (34%), Gaps = 55/388 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            P+  Q  +I   LQ+         I     GSGKT   L+ +   +             
Sbjct: 391 DPSPIQRVSIPIALQNRD------LIGVAVTGSGKTAAFLLPLLVYISSLPRLDEFEWRR 444

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G  A+I+AP   LAQQ      K+       V  I G      +   L       A I
Sbjct: 445 NDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEEQAYNLRN----GAEI 500

Query: 379 IIGTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLT--------------- 415
           II T     D I+   L+L           D     G ++ +                  
Sbjct: 501 IIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDTEE 560

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            + A A    +       +T++ T+     + +I  K   R  I T+      +D V +R
Sbjct: 561 AENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAVDTVEQR 620

Query: 475 LKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           ++ V  E K+   +   +  ++         N +   +      +H   S   +HG  + 
Sbjct: 621 VEFVAGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMGFSAVTLHGSKTQ 680

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +E+ + S +NG+  +L+AT +   GIDV D S+++  N      +  H++ GR GR  
Sbjct: 681 EQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRI-GRTGRAG 739

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +    I       +   Y    +L  + 
Sbjct: 740 KSGVAITFLGNEDNDVLYDLKQMLMKSS 767


>gi|325134358|gb|EGC57003.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M13399]
 gi|325144657|gb|EGC66955.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240013]
 gi|325205823|gb|ADZ01276.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M04-240196]
          Length = 457

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 127/374 (33%), Gaps = 46/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q +AI   L           +     G+GKT   ++     ++    A        
Sbjct: 26  PTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHP 79

Query: 325 ---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++ P   LA Q  + ++ Y +N  +   ++ G M    +   L         I++ 
Sbjct: 80  VRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCE----IVVA 135

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-- 429
           T     D ++           ++L   D     G     R  +         LL +AT  
Sbjct: 136 TVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSATFS 195

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              R L    +   +  ++  +      ++  II ++ I +     ++++        + 
Sbjct: 196 APIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQVIVF 255

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +  V+R          S   IHG  S   +   +++FK+G+ ++L+AT 
Sbjct: 256 --------CKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATD 307

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   G+D+ +   +I           +H++ GR GR       I L    + ++      
Sbjct: 308 IAARGLDIAELPFVINYEMPAQPEDYVHRI-GRTGRAGADGVAISL----MDESEQKMFE 362

Query: 610 VLKNTEDGFLIAEE 623
            +K      L+ E 
Sbjct: 363 SIKELTGNKLLIER 376


>gi|254438889|ref|ZP_05052383.1| DbpA RNA binding domain family [Octadecabacter antarcticus 307]
 gi|198254335|gb|EDY78649.1| DbpA RNA binding domain family [Octadecabacter antarcticus 307]
          Length = 702

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 75/367 (20%), Positives = 139/367 (37%), Gaps = 46/367 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
           + T  QE+     L+          ++    GSGKTL   IA+A ++    +        
Sbjct: 16  TLTPVQEACSDPALEGRD------LLVSAQTGSGKTLGFGIAIAQSLLGDAERFDRADAP 69

Query: 324 -AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    ++   + T  ++    G M     R+AL R     AHI++ T
Sbjct: 70  LALVIAPTRELALQVKRELEWLYEKTGAVIASTVGGMDMRDERRALGR----GAHIVVST 125

Query: 383 HALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
               +D I            ++L   DE    G ++ L+           L  +    +T
Sbjct: 126 PGRLRDHIMRKSIDLSSLKAVVLDEADEMLDLGFREDLEFI---------LDESPKDRQT 176

Query: 435 LVLTSLGDIDISKITEKPA-GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           L+ ++     I+K+ ++     + + T        D  IE     +S       I   + 
Sbjct: 177 LMFSATVPASIAKLAQRYQRDAERVATTTGEKQHAD--IEYRAFCVSARDTENAIINVLR 234

Query: 494 EKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
             +        N R+ V R  +   +   S+  + G +S  ++   + S ++G  ++ +A
Sbjct: 235 YFEAPNAIVFCNTRATVNRMTTRLSNRGFSVVALSGELSQSERTHALQSMRDGRARVCVA 294

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I           LH+  GR GR     +  ++  P + K +   
Sbjct: 295 TDVAARGIDLPNLDLVIHAELPTNQDTLLHR-SGRTGRAGRKGTSAMIVPPAVRKKAERL 353

Query: 608 LSVLKNT 614
           L   K T
Sbjct: 354 LGWAKLT 360


>gi|161870287|ref|YP_001599457.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
 gi|161595840|gb|ABX73500.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
          Length = 457

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 126/374 (33%), Gaps = 46/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q +AI   L           +     G+GKT   ++     ++    A        
Sbjct: 26  PTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHP 79

Query: 325 ---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++ P   LA Q  + ++ Y +N  +   ++ G M    +   L         I++ 
Sbjct: 80  VRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCE----IVVA 135

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-- 429
           T     D ++           ++L   D     G     R  +         LL +AT  
Sbjct: 136 TVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSATFS 195

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              R L    +   +  ++  +      ++  II ++ I +     ++++        + 
Sbjct: 196 APIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQVIVF 255

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +  V+R          S   IHG  S   +   +++FK+G  ++L+AT 
Sbjct: 256 --------CKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLVATD 307

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   G+D+ +   +I           +H++ GR GR       I L    + ++      
Sbjct: 308 IAARGLDIAELPFVINYEMPAQPEDYVHRI-GRTGRAGADGVAISL----MDESEQKMFE 362

Query: 610 VLKNTEDGFLIAEE 623
            +K      L+ E 
Sbjct: 363 SIKELTGNKLLIER 376


>gi|149914630|ref|ZP_01903160.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           AzwK-3b]
 gi|149811423|gb|EDM71258.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           AzwK-3b]
          Length = 470

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 129/366 (35%), Gaps = 49/366 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQA----- 324
            PT  Q  AI   L           +     G+GKT    + + A +  E G  A     
Sbjct: 54  EPTPIQTHAIPFALDSEDV------MGLAQTGTGKTAAFGLPLLAKLMEEPGKPAPKAVR 107

Query: 325 -VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA Q  + +    ++T I V ++ G      + K ++        +++ T 
Sbjct: 108 SLILAPTRELAGQIRDTLLPLVKDTPIKVALVVGGASIGAQIKRMQM----GTDVLVATP 163

Query: 384 AL-----------FQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
                          D+     L+L   D+    G    L+                   
Sbjct: 164 GRLLDLLDRRALSLSDT---RFLVLDEADQMLDLGFIHALRKIAGLLPS---------TR 211

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +T++ ++     + +I        P +  + P  +  + + +    +++  K   +   +
Sbjct: 212 QTMLFSATMPKQMEEIAGSYLTH-PKRVQVSPPGKAADKVTQGVHFIAKAAKGDLLVELL 270

Query: 493 EEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           ++ +E         +   ++     E    ++A IHG  S   +E  + +F++G  ++L+
Sbjct: 271 DKHREELALVFARTKHGSDKLARKLEQAGYAVAAIHGNKSQGQRERALRAFRDGEVRVLV 330

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ D   +   +  +     +H++ GR  R     + +    P        
Sbjct: 331 ATDVAARGLDIPDVKHVYNFDLPNVPENYVHRI-GRTARAGRDGAAVAFCAPDEMGELKD 389

Query: 607 RLSVLK 612
              V+K
Sbjct: 390 IQKVMK 395


>gi|121486020|gb|ABM54889.1| ATP-independent RNA helicase [Escherichia coli]
          Length = 437

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 131/352 (37%), Gaps = 24/352 (6%)

Query: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIM 327
            + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A     QA+++
Sbjct: 4   LTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 57

Query: 328 APIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
            P   LA Q    +++  +      +  + G  P   +R +L+       HII+ T    
Sbjct: 58  CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIVATPGRL 113

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            D +Q   + L  +          R+     + A   ++  A    +TL+ ++     I+
Sbjct: 114 LDHLQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIA 172

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNF 500
            I+ +   R P+   I   + +   IE+     S   K   +   +   +        N 
Sbjct: 173 AISGR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLRRLLSLHQPSSCVVFCNT 230

Query: 501 RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDA 560
           +   +           S   +HG +   D++  +  F NG+ ++L+AT V   G+D+   
Sbjct: 231 KKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSL 290

Query: 561 SIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            +++           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 291 ELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 341


>gi|330961645|gb|EGH61905.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 442

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 151/411 (36%), Gaps = 55/411 (13%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + +PT  Q  AI  +L           +     G+GKT    + +   +   G  
Sbjct: 16  LEALGYQTPTPVQTQAIPPVLAGRD------LMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+++AP   LA Q +E I++Y ++  +      G +    +   L +      
Sbjct: 70  VAPNSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRK----GV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +++ T     D     +I++ +L  +I+DE  R        L          +    P 
Sbjct: 126 DVLVATPGRLLDLYRQKAIKFSQLQTLILDEADRM-------LDLGFAEELRGIYAVLPK 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  ++        P+   + P N     +++  V + + +KA      
Sbjct: 179 QRQTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHL 238

Query: 492 IEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +++ +          R  V++     +    +   IHG      ++  +D FK+   K+L
Sbjct: 239 MKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKIL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT V   G+D+ D   ++  +        +H++ GR GR         L    +S    
Sbjct: 299 VATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAG-------LTGEAISLVCA 350

Query: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLL 656
             + +L   E   ++  + L++R        +Q   P+  +   +    +L
Sbjct: 351 DEVELLSAIE---VLTRQTLERR-------EEQDFEPEHRVPSTDASGQIL 391


>gi|295085349|emb|CBK66872.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens
           XB1A]
          Length = 374

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 142/362 (39%), Gaps = 41/362 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--------AGGQA 324
           PT  QE AI   L       +   +     G+GKT    I +   ++         G +A
Sbjct: 24  PTPIQEKAIPPALA------KRDILGCAQTGTGKTASFAIPIIQHLQLDKEAARRQGIKA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I  Y+++T+I   +I G + Q  +   L +       I++ T  
Sbjct: 78  LILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDLLRK----GIDILVATPG 133

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I    +   ++DE  R      +   +       +L       +TL  ++
Sbjct: 134 RLLDLMSQGHIHLDTIQYFVLDEADRMLDMGFIHDIK------RILPKLPKEKQTLFFSA 187

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                I  +T K   + P+K  I P +   + I+++   + + +K+  +   + + ++  
Sbjct: 188 TMPDSIISLT-KSLLKNPVKIYITPKSSTVDSIKQVVYFVEKKEKSQLLISILSKAEDQS 246

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   ++   +          IHG  S   ++S + +FK+G  ++++AT +   
Sbjct: 247 VLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIASR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+ +  ++I  +        +H++ GR GR   + + +       S+     ++ ++ 
Sbjct: 307 GIDINELPLVINYDLPDVPETYVHRI-GRTGRAGNMGTALTFC----SQEERKLVNDIQK 361

Query: 614 TE 615
             
Sbjct: 362 LT 363


>gi|154490038|ref|ZP_02030299.1| hypothetical protein PARMER_00267 [Parabacteroides merdae ATCC
           43184]
 gi|154089480|gb|EDN88524.1| hypothetical protein PARMER_00267 [Parabacteroides merdae ATCC
           43184]
          Length = 607

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 131/357 (36%), Gaps = 36/357 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
           SP   QE  I  +L D         I     G+GKT    + +   ++      QA+++ 
Sbjct: 24  SPMPVQEEVIPFLLGD-----DNDVIALAQTGTGKTAAFGLPILQKIDVTTYHPQALVLC 78

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   L  Q  + +  Y++    + V  + G      + K L+R      H+++ T     
Sbjct: 79  PTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLKR----GVHVVVATPGRLL 134

Query: 388 DSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRT--L 435
           D +    + L +V        DE    G    +   L +     ++LL +AT       +
Sbjct: 135 DLMNRKTVDLSLVKNVIMDEADEMLNMGFTDSINAILAEVPENRNMLLFSATMPKEIANI 194

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-LSEGKKAYWICPQIEE 494
               + +     I  K  G K I+ +   +   D+ +   ++            C   +E
Sbjct: 195 TKKYMKNPKEIVIGNKNEGNKNIRDIYYMVQARDKYLALKRIADFYPNIYGIVFCRTRKE 254

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
            +E   + + + +N+           +HG +S   ++ VM  F+    +LL+AT V   G
Sbjct: 255 TQEIADKLIQDGYNA---------DSLHGELSQAQRDYVMQKFRVKNIQLLVATDVAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           +DV D + +I         +  H+ RGR GR  +    I + H            ++
Sbjct: 306 LDVDDLTHVINYGLPDEVESYTHR-RGRTGRAGKTGISISICHVKEKGKIREIERII 361


>gi|310794364|gb|EFQ29825.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 695

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 62/377 (16%), Positives = 133/377 (35%), Gaps = 51/377 (13%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------------- 318
           PT  Q+ +I  +   M  ++ M        GSGKT   L  + +                
Sbjct: 215 PTPVQKYSIPIV---MGGRDLM---ACAQTGSGKTGGFLFPILSQAFINGPSTVPPNAAG 268

Query: 319 ------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372
                 +A   ++I+AP   L  Q YE  +K+   + +   ++ G      + + +ER  
Sbjct: 269 GFGRQRKAYPTSLILAPTRELVSQIYEESRKFAYRSWVRPCVVYGGADIGSQLRQIER-- 326

Query: 373 HGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVL 424
                +++ T     D I+  +        L+L   D     G + +++   +       
Sbjct: 327 --GCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGED---- 380

Query: 425 LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
            M      +TL+ ++    DI  +  +   +  I   +  +    E I +    + +  K
Sbjct: 381 -MPNVQNRQTLMFSATFPRDIQMLA-RDFLKDYIFLSVGRVGSTSENITQKVEYVEDVDK 438

Query: 485 AYWICPQIEEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
              +   +              + + +  +    +       IHG  +  ++E  ++ F+
Sbjct: 439 RSVLLDILHTHGAGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFR 498

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           NG C +L+AT V   G+D+ + + ++  +        +H++ GR GR          ++ 
Sbjct: 499 NGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRI-GRTGRAGNTGHSTAFFNR 557

Query: 599 PLSKNSYTRLSVLKNTE 615
                    L +LK   
Sbjct: 558 GNRGVVRELLELLKEAN 574


>gi|91223278|ref|ZP_01258544.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
 gi|91192091|gb|EAS78354.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
          Length = 443

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 126/372 (33%), Gaps = 27/372 (7%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQAVI 326
           T  Q+ AI   +           +     GSGKTL  ++ M               +AVI
Sbjct: 25  TDIQQQAIPVAIAGKD------LLASSKTGSGKTLAFVLPMLHKSLKTKSFSAKDPRAVI 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +AP   LA+Q Y  ++           +I G      + KAL R        I+ T    
Sbjct: 79  LAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRY----PKFIVATPGRL 134

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            D +++  L L  ++        + L L        +         +TL+ ++  D    
Sbjct: 135 ADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHKAAKHRRRQTLMFSATLDHADV 194

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------ 500
                     P +  I   N   + I +   +         I  ++  + E         
Sbjct: 195 NEIAAEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRVLSEAEYRQVIIFTA 254

Query: 501 -RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER              + G ++   + ++M  F+    K+L+ T V   G+D+  
Sbjct: 255 TRDDTERLTEKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIAT 314

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +I  +        +H++ GR GR       I L  P    +S+ R+      +  F 
Sbjct: 315 VTHVINFDMPKHTEEYVHRV-GRTGRAGNKGDAISLVGPK-DWDSFKRVEAYLQQDLEFS 372

Query: 620 IAEEDLKQRKEG 631
           + E DLK + +G
Sbjct: 373 VFE-DLKGKFKG 383


>gi|242240743|ref|YP_002988924.1| ATP-dependent RNA helicase DeaD [Dickeya dadantii Ech703]
 gi|242132800|gb|ACS87102.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 621

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 77/417 (18%), Positives = 151/417 (36%), Gaps = 40/417 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   V      
Sbjct: 21  LSDMGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLNNVNPELKA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E   +++++   + V  + G      R     R       +++
Sbjct: 75  PQILVLAPTRELAVQVAEACGEFSKHMHGVNVVALYGG----QRYDVQLRALRQGPQVVV 130

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   + Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPDGHQTALFSATM 190

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + D    +I      R  I      +  + +    ++ + +E   A  I
Sbjct: 191 PEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFLEAEDFDAAII 250

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L     +S A+ +G M+   +E  ++  K+G   +LIAT
Sbjct: 251 FVRTKN-------ATLEVAEALERSGYNSAAL-NGDMNQALREQTLERLKDGRLDILIAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 303 DVAARGLDVDRISLVVNYDIPMDAESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNVE 361

Query: 609 SVLKNTEDGFLIA-EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAK 664
             +K T     +   E L QR+  +     Q    +   +  + + +LL   +  A+
Sbjct: 362 RTMKLTIPEVELPNAELLGQRRLAKFAAKVQ---QQLESSDLDQYRALLAKLQPSAE 415


>gi|215741236|dbj|BAG97731.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 478

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 68/356 (19%), Positives = 132/356 (37%), Gaps = 47/356 (13%)

Query: 297 ILQGDVGSGKTLVALIAM-------------------AAAVEAGGQAVIMAPIGILAQQH 337
           +     GSGKT    + +                        A  +A+++AP   LA Q 
Sbjct: 1   MACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAKPRALVLAPTRELAAQI 60

Query: 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397
            E  KK++  T + V +  G  P  ++ + LER     A I++ T     D ++  K+ L
Sbjct: 61  NEEAKKFSFQTGLRVVVAYGGTPMYNQLRDLER----GADILVATPGRLVDMVERSKVSL 116

Query: 398 VIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKP 452
             +     DE  R          Q       + M    + +T++ ++    +I ++    
Sbjct: 117 EAIKYLVMDEADRMLDMGFEP--QIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDF 174

Query: 453 AGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------------ESNF 500
                  T +  +    ++I +   +LS+G+K  ++   ++ +                F
Sbjct: 175 LSNYIFIT-VGRVGSSTDLIMQKVELLSDGEKRGYLLDLLQRQSVGVANSKLQQPLTLVF 233

Query: 501 RSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
                  +SL     S       IHG  +  ++ES + SFK G   +++AT V   G+DV
Sbjct: 234 VETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDV 293

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            + + +I  +        +H++ GR GR  +  S    +       +   L ++  
Sbjct: 294 PNVAHVINYDLPKSIEDYVHRI-GRTGRAGKAGSATAFFTESDHSLAKGLLELMTE 348


>gi|167892936|ref|ZP_02480338.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           7894]
          Length = 416

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 130/369 (35%), Gaps = 42/369 (11%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----- 320
             + ++ PT  Q  AI  +L           +     G+GKT    + +   + A     
Sbjct: 17  NELGYTQPTPIQAQAIPAVLGG------GDLLAGAQTGTGKTAGFTLPILQRLHAFYAEN 70

Query: 321 -----GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQ 375
                  +A+I+ P   LA Q  E ++ Y++  ++   ++ G +    +  AL+R     
Sbjct: 71  RSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKR----G 126

Query: 376 AHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLL 425
             I++ T     D +Q           L+L   D     G    +K  L +       LL
Sbjct: 127 VDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLL 186

Query: 426 MTAT--PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
            +AT     ++L  + L    + ++  +    + I   I P++R  +      ++     
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNW 246

Query: 484 KAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCK 543
               +  +         +    R          S   IHG  S   +   +  FK+ T +
Sbjct: 247 FQVLVFTRT--------KHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQ 298

Query: 544 LLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603
           +L+AT +   GID+     ++  +  +     +H++ GR GR       + L      + 
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRI-GRTGRAGANGEAVSLVCVDEKQL 357

Query: 604 SYTRLSVLK 612
                 ++K
Sbjct: 358 LRDIERLIK 366


>gi|145298647|ref|YP_001141488.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851419|gb|ABO89740.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 431

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 120/356 (33%), Gaps = 27/356 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
             T  Q  AI  I + +        +     G+GKT    + +   +         +  +
Sbjct: 23  EMTPVQRQAIPTIRRGLDV------LASAQTGTGKTAAFALPILQRLVDKPAELQPSNAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   LA Q    I  + +   + V  + G   Q  + K L+      AHII+ T 
Sbjct: 77  VLILTPTRELAAQVASNINDFAKYLDVTVLTLVGGGKQDVQAKKLKA----GAHIIVATP 132

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               + +    L L  V E        R+     +     +L       + L+ ++    
Sbjct: 133 GRLLEHLTACNLSLSGV-ECLVLDEADRILDMGFSADVQQILQAVNKERQNLLFSATFSD 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---F 500
            + K+       KP    +   N   + +      + + +K   +   I ++       F
Sbjct: 192 GVKKLANV-MLDKPQIISVNKQNSTADTVTHTVYPVEQKRKRELLSELIGKQNWPQVLVF 250

Query: 501 RSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
            S  E  + L           A++HG  +   +   +  F  G  ++L+AT V   G+D+
Sbjct: 251 ASTRESCDELVAELNLDGIKSAVVHGDKAQGSRRRALREFTEGKLRVLVATEVAARGLDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
            D   ++  +        +H++ GR GR  +    I        +      +++  
Sbjct: 311 PDLQYVVNYDLPFLAEDYVHRI-GRTGRAGKSGMAISFVSREEERTLLEIEALIGQ 365


>gi|94676631|ref|YP_589051.1| inducible ATP-independent RNA helicase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|94219781|gb|ABF13940.1| inducible ATP-independent RNA helicase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 591

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 134/364 (36%), Gaps = 36/364 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L+++ +  P+  Q   I  +L           +     GSGKT    + +   +      
Sbjct: 21  LKDLGYETPSPIQAECIPHLLAGRDV------LGIAQTGSGKTAAFALPLLHNINLKLNA 74

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E    + +    I V  + G      R     R+    + +I+
Sbjct: 75  PQVLVLAPTRELAVQVSEAYSDFAKYMKGINVVALYGG----QRYDVQLRLLRQGSQVIV 130

Query: 381 GTHALFQDSIQY--------YKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++         + L+L   DE  R G  + +   L Q        L +AT 
Sbjct: 131 GTPGRLLDHLKRGTLDLSHLHGLVLDEADEMLRMGFIEDVENILAQIPAKHQTALFSATM 190

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + +     I    A R  I      ++   +     + +  E   A  I
Sbjct: 191 PEAIRRITRRFMTEPKEVHIESNIANRPDISQSYWTVHGRCKNKALARFLEVEDFDAAII 250

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   SL ++  +S A+ +G M+   +E  +   KNG+  +LIAT
Sbjct: 251 FVRTKN-------ATLEVSQSLEQNGYNSAAL-NGDMNQALREQTLSRLKNGSLDVLIAT 302

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 303 DVAARGLDVDRISLVVNYDIPLDSESYIHRI-GRTGRAGRAGRALLFVEQRERRLLRNIE 361

Query: 609 SVLK 612
            ++K
Sbjct: 362 RLMK 365


>gi|325859866|ref|ZP_08172996.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|327312944|ref|YP_004328381.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
 gi|325482792|gb|EGC85795.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|326946277|gb|AEA22162.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
          Length = 628

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 141/384 (36%), Gaps = 38/384 (9%)

Query: 259 GKIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA 317
            +  ++ +  + F  P   QE  I  +L      NR   I     G+GKT    + +   
Sbjct: 10  SEEIRRAISELGFEHPMPVQEEVIPYLL-----GNRNDVIALAQTGTGKTAAFGLPLLQR 64

Query: 318 VEAG---GQAVIMAPIGILAQQHYEFIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAH 373
           ++ G    QAV+++P   L  Q  + +K + +    + +  + G      +   L     
Sbjct: 65  IDTGSKDTQAVVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIETQIHQLRH--- 121

Query: 374 GQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRL--KLTQKATAPHV 423
               II+ T     D +   K        ++L   DE    G Q+ +   LT      + 
Sbjct: 122 -GVQIIVATPGRLIDLMHRGKARLDKVSNVVLDEADEMLNMGFQESITEILTGVPEDRNT 180

Query: 424 LLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV-LS 480
           LL +AT       +    L D     +  +  G + +  +   +N  D+ +   ++V   
Sbjct: 181 LLFSATMSRDVERVAKGYLHDYKEIVVGSRNEGAENVNHIYYMVNARDKYLALKRLVDFY 240

Query: 481 EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
               A   C    E +E   + + + +N+           +HG +S   ++  M  F++ 
Sbjct: 241 PKIYAIVFCRTKVETQEIADKLIKDGYNA---------ESLHGDLSQQQRDLTMQKFRSH 291

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPL 600
             ++L+AT V   G+DV D + +I            H+  GR GR  +  + I + H   
Sbjct: 292 LTQILVATDVAARGLDVNDLTHVINYGLPDDIENYTHR-SGRTGRAGKKGTSISIIHSRE 350

Query: 601 SKNSYTRLSVL-KNTEDGFLIAEE 623
                     + K   DG L A E
Sbjct: 351 KHKVRNIEREIGKEFVDGTLPAPE 374


>gi|328868347|gb|EGG16725.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 615

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 130/365 (35%), Gaps = 45/365 (12%)

Query: 257 VEGKIAQKILRNI-PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA- 313
            + +I +        F+ PT  Q  +   +L      N M+ +     GSGKTL  ++  
Sbjct: 117 ADIEIPRIFAHAFTGFTNPTVIQAQSWPIVL----SGNDMVGV--AATGSGKTLAFILPS 170

Query: 314 ---MAAAVEAG----GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
              +    + G      A++MAP   LA+Q  +  +  T+ T I +  + G   +  +  
Sbjct: 171 LMEIIKVPKRGYGATPLALVMAPTRELAKQIEDVARTVTKGTSIRMLCVYGGAGKGQQNS 230

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQYYKL------ILVIVDEQHRFGVQQRL--KLTQKA 418
            L         +I+GT     D +    L      +L   D     G   ++   + Q  
Sbjct: 231 VLRS----GVDLIVGTPGRLNDILTPRHLSTVKFLVLDEADRMLDMGFMPQIERIIRQIP 286

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKIT----EKPAGRKPIKTVI-----IPINRID 469
                ++ +AT       L+S    +  K+T    E  A     + VI      P    +
Sbjct: 287 EQHQTMMFSATWPKEVQGLSSKFLRNPLKLTVGTGELQANVNVTQHVIDNGAFSPNEMFE 346

Query: 470 EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
           ++ +R++ +L   +    I         +  R   +  N L      +  ++H       
Sbjct: 347 DLGKRVQDMLKSREDLLIIF-------CNTKRKCDQVSNFLDMKLQITCGVLHSGREQPQ 399

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E  +  F++    +L+AT V   G+D+     +I  +        +H++ GR GR    
Sbjct: 400 RERSLRQFRHHEINVLVATDVAARGLDIPKVKAVINLDFPLGIEDYVHRI-GRTGRAGAK 458

Query: 590 SSCIL 594
                
Sbjct: 459 GDAYT 463


>gi|156083314|ref|XP_001609141.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis T2Bo]
 gi|154796391|gb|EDO05573.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis]
          Length = 994

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 147/412 (35%), Gaps = 46/412 (11%)

Query: 231 DELLAGQIALLLMRKQFKKEIGIPINVEG--KIAQKILRNIPFS-PTKSQESAIKDILQD 287
            E        + +R ++        +  G       +L+   +  P   Q   I  ++  
Sbjct: 366 VEAFRKANGNIRVRGKYCPRPIYNFSQCGLPDPILSLLQRRNYEKPFPIQMQCIPALMCG 425

Query: 288 MSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAVIMAPIGILAQQHYE 339
                    +   + GSGKT+  L+     V          G   +I+AP   LA Q   
Sbjct: 426 RDV------LAIAETGSGKTMAYLLPAIRHVLYQPKLRENEGMIVLIIAPTRELASQIGV 479

Query: 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI--------Q 391
              K  +   I  + + G  P   +  AL+R       I+ GT     + +         
Sbjct: 480 ESSKLCKLVGIRTKAVYGGSPIGEQLNALKR----GVEIVCGTPGRLIEVLTISNGKVTN 535

Query: 392 YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451
             ++  V++DE  R            +     ++    P  +T + ++     I  + +K
Sbjct: 536 LRRVTFVVIDEADRM------FDLGFSPQISAIVDNIRPDRQTALFSATFPPTIEALAKK 589

Query: 452 PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES--------NFRSV 503
               KP++ ++    +    +++  +VL E +K Y +   + E  E              
Sbjct: 590 -ILTKPLQIIVGESGKSASQVDQHVMVLPERQKMYALLKLLGEWHEHGSIIVFVNRQLDA 648

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
              +  L +H     A++HG     D+E  +  F++GT  +LIAT++   GIDV +  ++
Sbjct: 649 DSMYAELIKHGYD-CAVLHGGQDQTDREFTLQDFRDGTKGILIATSIAARGIDVKNVVLV 707

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           I           +H++ GR GR   I +      P     S+  +  +K + 
Sbjct: 708 INYATPDHIEDYVHRV-GRTGRAGNIGTSYTFITPEEGAKSHDIIKAMKASN 758


>gi|157368742|ref|YP_001476731.1| ATP-dependent RNA helicase DeaD [Serratia proteamaculans 568]
 gi|157320506|gb|ABV39603.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 653

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 72/409 (17%), Positives = 148/409 (36%), Gaps = 38/409 (9%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L ++ +  P+  Q   I  +L           +     GSGKT    + +   ++A    
Sbjct: 22  LTDLGYEKPSPIQAECIPHLLNGRDV------LGMAQTGSGKTAAFSLPLLHNLDASLKA 75

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++AP   LA Q  E +  ++++   + V  + G      R     R       I++
Sbjct: 76  PQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGG----QRYDVQLRALRQGPQIVV 131

Query: 381 GTHALFQDSIQYYKL--------ILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT     D ++   L        +L   DE  R G  + +   + +        L +AT 
Sbjct: 132 GTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTALFSATM 191

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R +    + +    +I      R  I      +  + +    ++ + +E   A  I
Sbjct: 192 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAII 251

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + +        + +E   +L     SS A+ +G M+   +E  ++  K+G   +LIAT
Sbjct: 252 FVRTKN-------ATLEVAEALERSGYSSAAL-NGDMNQALREQTLERLKDGRLDILIAT 303

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV   S+++  +      + +H++ GR GR       +L       +      
Sbjct: 304 DVAARGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIE 362

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
             +K T     +   +++   E  +         +   +  +++  LL 
Sbjct: 363 RTMKLTIPEVELP--NVELLGERRLAKFAAKVQQQLESSDLDMYRGLLA 409


>gi|294139619|ref|YP_003555597.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293326088|dbj|BAJ00819.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 435

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 65/381 (17%), Positives = 133/381 (34%), Gaps = 44/381 (11%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQAV 325
           T  Q+ AI  I +          +     G+GKT    + +   +         +  +A+
Sbjct: 25  TPVQQEAIPAIRRGQDV------LASAQTGTGKTAAFALPILQKIFDNPMETQRSNARAL 78

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LA Q  E I  Y++   + V  I G +    + + L+R       II+ T   
Sbjct: 79  ILTPTRELASQIAENISDYSKYMDVSVLTIYGGVKLETQAQKLKR----GTDIIVATPGR 134

Query: 386 FQDSIQYYKLILVIVD--------EQHRFGV--QQRLKLTQKATAPHVLLMTATPIP--R 433
             + +Q   L L  VD             G     +  +         LL +AT     +
Sbjct: 135 LLEHLQACNLNLSNVDFLVLDEADRMLDMGFISDIQKIMQAVNKQRQNLLFSATFSSAVK 194

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L    L    +  +  + +    +  VI P+ +  +     +++  +  +   +     
Sbjct: 195 KLANDMLVKPKLINLNSQNSTADTVSQVIYPVEQRRKRELLSELIGKKNWQQVLVFT--- 251

Query: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  R   ++          + +++HG  +   +   +  FK G  + L+AT V   
Sbjct: 252 -----ATRDAADKLVKELNLDGITSSVVHGEKAQGTRRRALREFKEGKVRALVATEVAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+D+ D   ++  +        +H++ GR GR  +    I L      +  Y   +++  
Sbjct: 307 GLDIQDLEYVVNYDLPFLAEDYVHRI-GRTGRAGKSGVAISLVSREEERTLYDIETLIGK 365

Query: 614 -----TEDGFLIAEEDLKQRK 629
                T  G+ +   D+  ++
Sbjct: 366 KLPRVTIPGYEVGSRDMLIKQ 386


>gi|29347295|ref|NP_810798.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339194|gb|AAO76992.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 374

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 138/362 (38%), Gaps = 41/362 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------QA 324
           PT  QE AI   L       +   +     G+GKT    I +   +            +A
Sbjct: 24  PTPIQEKAIPVALA------KKDILGCAQTGTGKTASFAIPIIQHLHLNKGEGKRSEIKA 77

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I+ Y++ T+I   +I G + Q  +   L +       I++ T  
Sbjct: 78  LILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDMLHK----GIDILVATPG 133

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      I+   +   ++DE  R      +   ++       ++   P  +  +  S
Sbjct: 134 RLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKR-------ILPKLPKEKQTLFFS 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
               D          + P+K  + P +   + I++L   + + +K+  +   +++ ++  
Sbjct: 187 ATMPDTIIALTNSLLKNPVKIYVTPKSSTVDSIKQLVYFVEKKEKSLLLISILQKSEDRS 246

Query: 499 -----NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  +   ++   +          IHG  S   ++S + +FK+G  ++++AT +   
Sbjct: 247 VLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIASR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+ +  ++I  +        +H++ GR GR       +       S+    +++ ++ 
Sbjct: 307 GIDINELPLVINYDLPDVPETYVHRI-GRTGRAGNAGMALTFC----SQEERKQINDIQK 361

Query: 614 TE 615
             
Sbjct: 362 LT 363


>gi|17232210|ref|NP_488758.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
 gi|17133855|dbj|BAB76417.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
          Length = 426

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 57/354 (16%), Positives = 122/354 (34%), Gaps = 41/354 (11%)

Query: 269 IPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----- 322
           + ++ PT  Q  +I  +L           +     G+GKT    + +   +         
Sbjct: 19  LGYTKPTPIQMQSIPAVLSGRD------LLAGAQTGTGKTASFTLPLLHLLSQDSLKSAS 72

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+I+ P   LA Q    ++ Y +  ++   ++ G +    +++ L     G+ 
Sbjct: 73  NASSPIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQKQRL----KGRV 128

Query: 377 HIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            I++ T     D +Q   + L  +     DE  R      ++           +++  P 
Sbjct: 129 DILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDI-------RRILSLLPK 181

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L      D  K        +P    +   N   + + +    +   +K   +   
Sbjct: 182 QRQNLLFFATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKIERDRKRDLLAHL 241

Query: 492 IEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           I +            +   +R      H       IHG  S   +   +  FKNG+ ++L
Sbjct: 242 IRKDNWYQVLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGSLQVL 301

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           +AT +   G+D+ +   ++  +  +     +H++ GR GR       + L    
Sbjct: 302 VATDIAARGLDISELPYVVNFDLPYVPEDYVHRI-GRTGRAGASGEAVSLVSAD 354


>gi|332218192|ref|XP_003258243.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Nomascus leucogenys]
          Length = 783

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 139/423 (32%), Gaps = 72/423 (17%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------GQAV 325
             Q      +            I Q   G+GKT    I +   +             Q +
Sbjct: 211 PIQAKTFHHVYSGKD------LIAQARTGTGKTFSFAIPLIEKLHEELQDRKRGRPPQVL 264

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  +     T+  ++ V    G  P   +    ER+ +G   I++GT   
Sbjct: 265 VLAPTRELANQVSKDFSDITK--KLSVACFYGGTPYGGQ---FERMRNG-IDILVGTPGR 318

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +D IQ  KL        +L  VD+    G   +++              +   P+TL+ 
Sbjct: 319 IKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKD----SEDDPQTLLF 374

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEK 495
           ++     +  + +K       +  +I        I  E L +     ++A  I   I   
Sbjct: 375 SATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVY 434

Query: 496 KESNFR-----SVVERFNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                R        +    L ++         +HG +    +E  +  F+NG+  +L+AT
Sbjct: 435 SGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVAT 494

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +  ++I  +      + +H+  GR GR      CI  Y            
Sbjct: 495 NVAARGLDIPEVDLVIQSSPPKDVESYIHR-SGRTGRAGRTGVCICFYQHKEEYQ----- 548

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
                                   ++ ++Q    KF          +++ + KDA  +L 
Sbjct: 549 ------------------------LVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLD 584

Query: 669 QDP 671
             P
Sbjct: 585 SVP 587


>gi|294338780|emb|CAZ87114.1| ATP-dependent RNA helicase [Thiomonas sp. 3As]
          Length = 533

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 117/341 (34%), Gaps = 30/341 (8%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----------- 321
           PT  Q  AI  +L           +     G+GKT    + M   +  G           
Sbjct: 24  PTPIQLQAIPVVLAGHD------LLAAAQTGTGKTAGFTLPMLQRLSGGEPARNAKGKII 77

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q +E +  Y ++ ++    + G +    +  AL R       I++ 
Sbjct: 78  PRALILTPTRELAAQVHENLAAYGRHLKLHSMAMYGGVGMQPQINALARGM----DIVVA 133

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D      + L  V +        R+           ++       + L+ ++  
Sbjct: 134 TPGRLLDHQSQRNIDLSAV-QMLVLDEADRMLDMGFVHDMRRIVALLPKQRQNLLFSATF 192

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF- 500
             +I ++        P +  +   N   +++E++   +   +K   +   I E+      
Sbjct: 193 SEEIKRLAGDFL-VNPQQVAVARQNATADLVEQIVFPVDRERKRDMLVHLIRERNWPQTL 251

Query: 501 -----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +    R     +         HG  +   +   +  FK+G  ++L+AT +   GI
Sbjct: 252 VFTRTKHGANRLAEQLDKDGIVATGFHGNKTQSARLRALADFKSGKLQVLVATDIAARGI 311

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           D+    +++     +     +H++ GR GR       I L 
Sbjct: 312 DIDQLPVVVNYELPNIPEDYVHRI-GRTGRAGSNGQAISLV 351


>gi|212635941|ref|YP_002312466.1| DEAD box family ATP-dependent RNA helicase [Shewanella
           piezotolerans WP3]
 gi|212557425|gb|ACJ29879.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
           piezotolerans WP3]
          Length = 447

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 77/366 (21%), Positives = 131/366 (35%), Gaps = 39/366 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ ++ Q +      +PT+ QE AI   L           +     GSGKTL  L+  
Sbjct: 6   FSLDQRLLQTLKHMGIDTPTEIQEQAIPIALAGKD------LMASSKTGSGKTLAFLLPA 59

Query: 315 AAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              +       +   +AVI+ P   LA Q Y  ++    NTQ     I G      + KA
Sbjct: 60  MQRMISCKALSKRDPRAVILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKA 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKAT 419
           L R      H ++ T     D ++ + L L  +        D     G  ++LK    A 
Sbjct: 120 LAR----DPHFVVATPGRLADHLKQHHLHLNGLELLIFDEADRMLDLGFAEQLKQINNAA 175

Query: 420 AP---HVLLMTATPIP---RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE 473
                  L+ +AT        +    L   +   I       K I   I   + +D    
Sbjct: 176 DHKRRQTLMFSATLDHGDVDEIAAELLKTPEHVAIGAGNLEHKDITQRIFLCDHLDHKEA 235

Query: 474 RLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
            L  +L + ++   I            R   +R            A + G +    +  +
Sbjct: 236 LLSRILKDEQQKQIIIFT-------ATRQDTDRLAKKLADDGFKTASLSGELKQSARNQI 288

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           MD F  G  ++L+ T V   G+D+++ S++I  +   F    +H++ GR GR       +
Sbjct: 289 MDEFSRGLQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTGRAGAKGDAV 347

Query: 594 LLYHPP 599
            L  P 
Sbjct: 348 SLVGPK 353


>gi|110834947|ref|YP_693806.1| ATP-dependent RNA helicase DbpA [Alcanivorax borkumensis SK2]
 gi|110648058|emb|CAL17534.1| ATP-dependent RNA helicase DbpA [Alcanivorax borkumensis SK2]
          Length = 459

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 156/447 (34%), Gaps = 65/447 (14%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---G 321
           L  + + + T  Q  ++  +L+          I Q   GSGKT    + +   +     G
Sbjct: 19  LDALGYVTMTPVQAQSLPLLLKGHDV------IAQASTGSGKTAAFGLGLLHPLNPRYYG 72

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    I++  +    I V  + G  P   +  +LE      A I++
Sbjct: 73  CQALVLCPTRELADQVAVEIRRLARGPGNIKVLTLCGGQPIGPQIGSLEH----GAQIVV 128

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQRL--KLTQKATAPHVLLMTATP 430
           GT       +            L+L   D     G    +   + Q       LL +AT 
Sbjct: 129 GTPGRVLKHLSKGTLSLDGLNTLVLDEADRMLDMGFYDSIAEVIRQTPPRRQTLLFSATY 188

Query: 431 IP--RTLVLTSLGDIDISKITEKPAGRKPIKTV--IIPINRIDEVIERLKVVLSEGKKAY 486
            P  + L  T + +    ++       +  +    + P  R + V     +         
Sbjct: 189 PPGIKQLAETFMSNPQHVEVETLHDNSQIEQRYYEVEPFQREEAV--ASAIACFRPVSCV 246

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C   ++ ++   +   +           S  +++  +   +++ V+  F N +  +L+
Sbjct: 247 VFCVTKQQCQDVVNQLCRQGL---------SAMVLNSDLEQRERDEVLTLFANRSLSVLV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+ +  ++I     H     +H++ GR GR  E    I L  P  S+ +  
Sbjct: 298 ATDVAARGLDIDNLDMVINAELSHEPQTHIHRV-GRTGRAGEKGLAINLVAPRESRRAIA 356

Query: 607 RLSV--------------------LKNTEDGFLIAEEDLKQRKEGEILG--IKQSGMPKF 644
              +                    ++       I      + + G+ILG     +G+   
Sbjct: 357 IEQLQGAPLNWHPLNSLKPREGEPMQPPTITLCIGAGRKDKLRPGDILGALTGDAGIAGN 416

Query: 645 LIAQPEL--HDSLLEIARKDAKHILTQ 669
            + +  +  + + + I R+ A   L +
Sbjct: 417 QVGKITVTDYQAYVAIDRESADLALER 443


>gi|90417199|ref|ZP_01225126.1| putative ATP-dependent RNA helicase DbpA [marine gamma
           proteobacterium HTCC2207]
 gi|90330975|gb|EAS46236.1| putative ATP-dependent RNA helicase DbpA [marine gamma
           proteobacterium HTCC2207]
          Length = 466

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 84/461 (18%), Positives = 164/461 (35%), Gaps = 65/461 (14%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ +S  T  Q  A+  IL           I +   GSGKT    + +   ++     
Sbjct: 23  LASLGYSEMTPIQAQALPSILASKDV------IAKAKTGSGKTATFSLGLLNKLDVKRFR 76

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q +++ P   LA Q    I+K  +    I V  + G +    +  +LE      AHII+
Sbjct: 77  VQTLVLCPTRELADQVAAEIRKLARGIHNIKVLTLCGGVAFGPQVGSLEH----GAHIIV 132

Query: 381 GTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    +D ++   L L  +        D     G QQ L                    
Sbjct: 133 GTPGRVEDHLRKANLNLDNLTTLILDEADRMLDMGFQQALDDIVGYMPRQ---------R 183

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +T++ ++     I KI ++   R P+   +   +    ++E L  + ++  +   +   +
Sbjct: 184 QTMLFSATYPEKIDKIAQR-IMRSPVTVEVQDSHSSQSIVETLYQIDNDQSRIEAVRLLL 242

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
           +  +        N +   +R  +         + +HG +   D++  +  F N +  +L+
Sbjct: 243 QAHQPETTLIFCNTKIETDRVANELRAVGYEASALHGDLEQKDRDQTLACFANRSVSVLV 302

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+D+    ++I            H++ GR GR         LY    +     
Sbjct: 303 ATDVAARGLDIDALDMVINYQMAQELEVHTHRI-GRTGRAGAQGIACSLYTQKETYKIDL 361

Query: 607 RLSVLKN-TEDG------------FLIAEEDLKQ-------RKEGEILG--IKQSGMPKF 644
               L+     G            F      +          + G+I+G      G+P  
Sbjct: 362 LEDYLEQKFNRGDLPHLELLREPVFYPPMVTIHIGGGKKQKLRPGDIVGALTGADGIPGT 421

Query: 645 LIAQPEL--HDSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
            I + ++  H + + + RK  K    +  +   ++G+S R+
Sbjct: 422 EIGKIQVGDHWAYVAVTRKHGKTAFKKLSE-GKLKGRSFRV 461


>gi|156976352|ref|YP_001447258.1| ATP-dependent RNA helicase [Vibrio harveyi ATCC BAA-1116]
 gi|156527946|gb|ABU73031.1| hypothetical protein VIBHAR_05125 [Vibrio harveyi ATCC BAA-1116]
          Length = 447

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 128/372 (34%), Gaps = 27/372 (7%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQAVI 326
           T  Q+ AI   +           +     GSGKTL  ++ M               +AVI
Sbjct: 29  TDIQQQAIPVAIAGKD------LLASSKTGSGKTLAFVLPMLHKSLKTKSFSAKDPRAVI 82

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +AP   LA+Q Y  ++           +I G      + KAL R        I+ T    
Sbjct: 83  LAPTRELAKQVYGELRSMLGGLTYDAALILGGENFNDQVKALRRY----PKFIVATPGRL 138

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            D +++  L L  ++        + L L        +         +TL+ ++  D    
Sbjct: 139 ADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHKAAKHRRRQTLMFSATLDHAEV 198

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------ 500
                     P +  I   N   + I +   +         I  ++ E+ E         
Sbjct: 199 NDIASEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERVLEEAEYRQVIIFTA 258

Query: 501 -RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER  +           + G ++   + ++M  F+    K+L+ T V   G+D+  
Sbjct: 259 TRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIAT 318

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +I  +        +H++ GR GR       + L  P    +S+ R+      +  F 
Sbjct: 319 VTHVINFDMPKHTEEYVHRV-GRTGRAGNKGDAVSLVGPK-DWDSFKRVETYLQQDLNFS 376

Query: 620 IAEEDLKQRKEG 631
           + E DLK + +G
Sbjct: 377 VFE-DLKGKFKG 387


>gi|126644118|ref|XP_001388195.1| hypothetical protein [Cryptosporidium parvum Iowa II]
 gi|126117268|gb|EAZ51368.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
          Length = 586

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 133/366 (36%), Gaps = 41/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       L      + M+ I   + GSGKTL  L+     + A        G  
Sbjct: 190 EPTAIQVQGWPVAL----SGHDMIGI--AETGSGKTLGFLLPAMIHIRAQPLLRYGDGPI 243

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +++AP   L +Q  E   ++    ++    I G +P+  ++ ++         I I   
Sbjct: 244 CLVLAPTRELVEQIREQANQFGSIFKLRNTAIYGGVPKRPQQASIRN----GVEICIACP 299

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       ++  +++DE  R          +K      L+    P  +TL+ +
Sbjct: 300 GRLIDLLEEGYTNLSRVTYLVLDEADRMLDMGFEPQIRK------LVSQIRPDRQTLLWS 353

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPIN--RIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    ++ K+        PI   +  ++  +    I++   V+ E +K   +   + +  
Sbjct: 354 ATWPKEVQKLARDLCKEIPIHINVGSVDALKASHNIKQYVNVVEESEKKAKLKMFLGQVM 413

Query: 497 E---------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +   +               IHG     ++  V++ F+ G   ++IA
Sbjct: 414 VESAPKVLIFCETKRGADILTKELRLDGWPALCIHGDKKQEERTWVLNEFRTGASPIMIA 473

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+D+ D + +I  +  +     +H++ GR GR       +  + P   + +   
Sbjct: 474 TDVAARGLDIKDINFVINFDFPNQIEDYIHRI-GRTGRAGATGVSLSFFTPDKYRMASDL 532

Query: 608 LSVLKN 613
           + VLK 
Sbjct: 533 IKVLKE 538


>gi|328771766|gb|EGF81805.1| hypothetical protein BATDEDRAFT_16042 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 584

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 91/458 (19%), Positives = 160/458 (34%), Gaps = 72/458 (15%)

Query: 218 FEWTSPARERLAYDELLAGQ--IALLLMRKQFKKEIGIPINVEGKIAQKILR-------- 267
            E  S    R+A+DE    +  ++ +  R     +    I+ +G      LR        
Sbjct: 110 IELQSLKDRRVAFDERHWSEKKLSEMKDRDWRIFKEDFSISTKGGNIPNPLRTWDECELS 169

Query: 268 --------NIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
                    I +  PT  Q  AI   LQ+         I   + GSGKT   +I M   +
Sbjct: 170 ETILGAISRIGYKEPTPIQRQAIPMGLQNRD------IIGIAETGSGKTASFVIPMLKFI 223

Query: 319 -----------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
                        G  A+I+AP   LAQQ      K+ +    I   I G      +   
Sbjct: 224 TEMPPLTEINSSQGPYALILAPTRELAQQIESETSKFAREMGFICVSIVGGHAVEGQAFN 283

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLTQKAT 419
           L       AHI+I T    +D ++   L+L           D     G +  LK    A 
Sbjct: 284 LRN----GAHIVIATPGRLRDCLEQRILVLSQCTYVVMDEADRMVDMGFEPDLKFILDAM 339

Query: 420 AP----------------HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVII 463
                               L    TP  +T++ ++   + + ++ +    R    T+ I
Sbjct: 340 PVSNIKPDSDESENVQLLRELTGKVTPFRQTVMFSATMPVAVERLAKAYLRRPATVTIGI 399

Query: 464 PINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTS 516
               +D + +R++++  +G+K   +   +  ++         N +   E      +    
Sbjct: 400 AGQVVDRIEQRVEMINDDGRKLSRLQEILTSRQFEPPMIVFVNQKKGCEVIARALDRLGL 459

Query: 517 SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQL 576
               +HG  S   +E+ +   K GT  +L+AT V   GIDV + S++I  +         
Sbjct: 460 KSTTLHGGKSQEQREASLLGLKQGTKDILVATDVAGRGIDVKNVSVVINFDMAKSIEDYT 519

Query: 577 HQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           H++ GR GR  +  + I       +   Y    ++  +
Sbjct: 520 HRI-GRTGRAGKKGTAITFLSNYDTDVMYDLRQMILKS 556


>gi|254672936|emb|CBA07321.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis alpha275]
          Length = 489

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 127/368 (34%), Gaps = 34/368 (9%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q +AI   L           +     G+GKT   ++     ++    A        
Sbjct: 26  PTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHP 79

Query: 325 ---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++ P   LA Q  + ++ Y +N  +   ++ G M    +   L         I++ 
Sbjct: 80  VRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCE----IVVA 135

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D ++   + L  V E        R+           ++       +TL+ ++  
Sbjct: 136 TVGRLLDHVKQKNISLNKV-EIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSATF 194

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE---- 497
              I K+ +      P    +   N  +  +E+  + +   +K   +   I +       
Sbjct: 195 SAPIRKLAQDFMN-APETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLHMNQVI 253

Query: 498 --SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +  V+R          S   IHG  S   +   +++FK+G+ ++L+AT +   G+
Sbjct: 254 VFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARGL 313

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615
           D+ +   +I           +H++ GR GR       I L    + ++       +K   
Sbjct: 314 DIAELPFVINYEMPAQPEDYVHRI-GRTGRAGADGVAISL----MDESEQKMFESIKELT 368

Query: 616 DGFLIAEE 623
              L+ E 
Sbjct: 369 GNKLLIER 376


>gi|116787191|gb|ABK24405.1| unknown [Picea sitchensis]
          Length = 408

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 70/340 (20%), Positives = 127/340 (37%), Gaps = 33/340 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ A+  I+           I Q   G+GKT +  +A+   ++      QA+I++
Sbjct: 57  KPSAIQQRAVMPIINGRDV------IAQAQSGTGKTSMIALAVCQIIDTSIREVQALIVS 110

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        +      G        + LE       H++ GT     D
Sbjct: 111 PTRELAAQTEKVILAIGDFINVQAHACIGGKSIGEDIRKLEY----GVHVVSGTPGRVCD 166

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G + ++            V+L++AT     L +T
Sbjct: 167 MIKRRTLRTRAVKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEIT 226

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
           +    D  +I  K      + IK   + + R +   + L          Y      +   
Sbjct: 227 NKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTL-------CDLYDTLTITQAVI 279

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N +  V+           +++ +HG M   +++++M  F+ GT ++LI T V   G+D
Sbjct: 280 FCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRAGTTRVLITTDVWARGLD 339

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           V   S++I  +  +     +H++ GR GR       I   
Sbjct: 340 VQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFV 378


>gi|21555870|gb|AAM63951.1| Eukaryotic initiation factor 4A, putative [Arabidopsis thaliana]
          Length = 412

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 124/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 61  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLA 114

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 115 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVFD 170

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 171 MLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 230

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + + + +  +E L          Y      +   
Sbjct: 231 RKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETL-------CDLYETLAITQSVI 283

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R   +           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 284 FVNTRRKXDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 343

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 344 VQQVSLVINFDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRD 385


>gi|37522077|ref|NP_925454.1| hypothetical protein gll2508 [Gloeobacter violaceus PCC 7421]
 gi|35213076|dbj|BAC90449.1| gll2508 [Gloeobacter violaceus PCC 7421]
          Length = 437

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 141/379 (37%), Gaps = 32/379 (8%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           L  + F  PT  Q  +I  +L           + Q   G+GKT    + +    +   A 
Sbjct: 18  LDELGFEQPTPIQLKSIPFLLDGRD------LLAQAQTGTGKTAAFGLPLVDRSDPQDAR 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+++AP   LA Q  E I  Y++++ + V  I G  P   + + L       A I++G
Sbjct: 72  VQALVLAPTRELAVQVCEAIHTYSKHSGVRVLPIYGGQPIDRQMRRLRA----GAQIVVG 127

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D ++   L L  +         Q L +         +L  A P  + +  ++  
Sbjct: 128 TPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFI-EEVQTILDAAPPERQLVFFSATL 186

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDE-VIERLKVVLSEGKKAYWICPQIEEKKE--- 497
              I K+  +        T+ +P    D   I +    ++   +A  +   +  +     
Sbjct: 187 PASIRKLAARHLRTP--MTLTMPAEERDTPAIAQRVYFVNFKNRAQALTRVLAAEDPASA 244

Query: 498 ---SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
              +  +   +      +        +HG ++   +E+V+  F+     +++AT V   G
Sbjct: 245 LIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVVATDVAARG 304

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +D+ D S +I  +    G + +H++ GR GR       I    P    + Y    + + T
Sbjct: 305 LDIADLSHVINYDMPQDGESYIHRI-GRTGRAGRTGVAISFALP---TDRYRLRLIERAT 360

Query: 615 EDGFLIAEEDLKQRKEGEI 633
               + A    K    GEI
Sbjct: 361 GSTLVPA----KIPSAGEI 375


>gi|149186749|ref|ZP_01865060.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
 gi|148829657|gb|EDL48097.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
          Length = 455

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 74/364 (20%), Positives = 128/364 (35%), Gaps = 36/364 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQA------ 324
           +PT  Q  AI  +L+       ++ I Q   G+GKT   ++     + +A  Q+      
Sbjct: 24  TPTPIQAQAIPPVLEG----RDLMGIAQ--TGTGKTAAFMLPSIDRLRDADKQSPFKSCR 77

Query: 325 -VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+AP   LA Q  +  K Y     + V  I G       R  L R       I++ T 
Sbjct: 78  MLILAPTRELAGQIADSAKDYGALAGLKVHSIVGGTSVNKDRNKLHR----GTDILVATP 133

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               D I      L  V+        Q L L        +  +      +TL  ++    
Sbjct: 134 GRLLDLIDQKAFTLDKVEILILDEADQMLDLGFIHALRKISEL-VPDDRQTLFFSATMPK 192

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
            I ++  K   R P+K  + P +   E I++   ++ + +K   +   + E+ +   +  
Sbjct: 193 QIQELVGKY-CRNPVKVSVTPESTTAERIDQYLFMVQQDEKQTLLEMILSERHQVPGKFE 251

Query: 504 VERFNSLHEHFTSSIA-----------IIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                +  +H    I             IHG  S   +E  +D FK     +L+AT V  
Sbjct: 252 RVLIFARTKHGCDRIVKKLGQSGIPANAIHGNKSQPQRERALDEFKRAKTPILVATDVAA 311

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            GID+   S ++     +     +H++ GR  R       I              L  ++
Sbjct: 312 RGIDIPGVSHVLNYELPNVPEQYVHRI-GRTARAGRDGVAIAFCAEDE----RDYLKDIR 366

Query: 613 NTED 616
              D
Sbjct: 367 KKTD 370


>gi|148978426|ref|ZP_01814920.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145962452|gb|EDK27731.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 428

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 128/379 (33%), Gaps = 50/379 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-------- 323
            PT  Q   I  +L           I   + GSGKT    + +   +             
Sbjct: 30  QPTPIQAQVIPSVLAGRD------LIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGKG 83

Query: 324 ----AVIMAPIGILAQQHYEFIKKYTQNT--QIIVEIITGNMPQAHRRKALERIAHGQAH 377
                +I+ P   LA+Q  + +K Y  +    I    + G +    + ++L     G   
Sbjct: 84  NFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQSLR----GGTD 139

Query: 378 IIIGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMT 427
           I++ T     D I        +   L+L   D     G  + L   L    +    LL +
Sbjct: 140 ILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFS 199

Query: 428 ATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR-IDEVIERLKVVLSEGKKAY 486
           AT   +   LT     D  ++  + A    +   +  + +     +    +   E ++A 
Sbjct: 200 ATFPEQVQTLTHELLTDPIEVQLQSANASTLVQRVFEVEKGRKTALLAHLIQQHEWRQAL 259

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
                       N ++  E              + HG      +  +++ FK+G   +LI
Sbjct: 260 IFV---------NAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLI 310

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL-----YHPPLS 601
           AT +   G+D+    ++I  +        +H++ GR GR  E+   + L     YH    
Sbjct: 311 ATDIAARGLDIEKLPVVINFDLPRSPSDYMHRI-GRSGRAGEVGLALSLIDHEDYHHFKI 369

Query: 602 KNSYTRLSVLKNTEDGFLI 620
                ++ + +   +GF +
Sbjct: 370 IEKKNKIRLEREQIEGFEV 388


>gi|145332383|ref|NP_001078148.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|332641919|gb|AEE75440.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 402

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 51  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLA 104

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 105 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVFD 160

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 161 MLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 220

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + + + +  +E L          Y      +   
Sbjct: 221 RKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETL-------CDLYETLAITQSVI 273

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 274 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 333

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 334 VQQVSLVINFDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRD 375


>gi|59800607|ref|YP_207319.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|194097783|ref|YP_002000826.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998282|ref|ZP_04718206.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae 35/02]
 gi|240013464|ref|ZP_04720377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18]
 gi|240015903|ref|ZP_04722443.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140]
 gi|240080042|ref|ZP_04724585.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA19]
 gi|240112252|ref|ZP_04726742.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|240114997|ref|ZP_04729059.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|240117282|ref|ZP_04731344.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|240120536|ref|ZP_04733498.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1]
 gi|240122833|ref|ZP_04735789.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|240125029|ref|ZP_04737915.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-92-679]
 gi|240127543|ref|ZP_04740204.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493059|ref|ZP_05106230.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291]
 gi|260441187|ref|ZP_05795003.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI2]
 gi|268594137|ref|ZP_06128304.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268596188|ref|ZP_06130355.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268598313|ref|ZP_06132480.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|268600665|ref|ZP_06134832.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|268602977|ref|ZP_06137144.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|268681449|ref|ZP_06148311.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268683617|ref|ZP_06150479.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268685920|ref|ZP_06152782.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035]
 gi|291044521|ref|ZP_06570230.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293397657|ref|ZP_06641863.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|59717502|gb|AAW88907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|193933073|gb|ACF28897.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512099|gb|EEH61444.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291]
 gi|268547526|gb|EEZ42944.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268549976|gb|EEZ44995.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268582444|gb|EEZ47120.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|268584796|gb|EEZ49472.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|268587108|gb|EEZ51784.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|268621733|gb|EEZ54133.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268623901|gb|EEZ56301.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268626204|gb|EEZ58604.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035]
 gi|291011415|gb|EFE03411.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291611603|gb|EFF40672.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|317163562|gb|ADV07103.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 457

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 62/373 (16%), Positives = 131/373 (35%), Gaps = 44/373 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q +AI   L           +     G+GKT   ++     ++    A        
Sbjct: 26  PTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHP 79

Query: 325 ---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++ P   LA Q  + ++ Y +N  +   ++ G +    +   L         I++ 
Sbjct: 80  VRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRAGCE----IVVA 135

Query: 382 THALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLV 436
           T     D ++   + L      ++DE  R      +   +K      ++       +TL+
Sbjct: 136 TVGRLLDHVKQKNISLNKAEIVVLDEADRMLDMGFIDDIRK------IMQMLPRQRQTLL 189

Query: 437 LTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
            ++     I K+ +      P    +   N  +  +E+  + +   +K   +   I +  
Sbjct: 190 FSATFSAPIRKLAQDFMN-APETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLH 248

Query: 497 E------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
                     +  V+R          S   IHG  S   +   +++FK+G+ ++L+AT +
Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ +   +I           +H++ GR GR       I L    + ++       
Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYIHRI-GRTGRAGADGVAISL----MDESEQKMFEA 363

Query: 611 LKNTEDGFLIAEE 623
           +K      L+ E 
Sbjct: 364 IKELTGNKLLIER 376


>gi|121635112|ref|YP_975357.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|120866818|emb|CAM10576.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
          Length = 483

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 127/374 (33%), Gaps = 46/374 (12%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA-------- 324
           PT  Q +AI   L           +     G+GKT   ++     ++    A        
Sbjct: 52  PTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHP 105

Query: 325 ---VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
              +++ P   LA Q  + ++ Y +N  +   ++ G M    +   L         I++ 
Sbjct: 106 VRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCE----IVVA 161

Query: 382 THALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT-- 429
           T     D ++           ++L   D     G     R  +         LL +AT  
Sbjct: 162 TVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATFS 221

Query: 430 PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
              R L    +   +  ++  +      ++  II ++ I +     ++++        + 
Sbjct: 222 APIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQVIVF 281

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +  V+R          S   IHG  S   +   +++FK+G+ ++L+AT 
Sbjct: 282 --------CKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATD 333

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   G+D+ +   +I           +H++ GR GR       I L    + ++      
Sbjct: 334 IAARGLDIAELPFVINYEMPAQPEDYVHRI-GRTGRAGADGVAISL----MDESEQKMFE 388

Query: 610 VLKNTEDGFLIAEE 623
            +K      L+ E 
Sbjct: 389 SIKELTGNKLLIER 402


>gi|301755880|ref|XP_002913778.1| PREDICTED: nucleolar RNA helicase 2-like [Ailuropoda melanoleuca]
          Length = 794

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 143/423 (33%), Gaps = 72/423 (17%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---------AGGQAV 325
             Q      +            I Q   G+GKT    I +   ++            Q +
Sbjct: 213 PIQAKTFHHVYSGKD------LIAQARTGTGKTFSFAIPLIEKLQGEMQDRKRGRAPQVL 266

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q        T+     V    G  P   +   +ER+ +G   I++GT   
Sbjct: 267 VLAPTRELANQVSRDFSDITRKLA--VACFYGGTPYGGQ---IERMRNG-IDILVGTPGR 320

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +D +Q  KL        +L  VD+    G   +++              +   P+TL+ 
Sbjct: 321 IKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKD----SEDNPQTLLF 376

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIE-- 493
           ++     +  + +K       +  +I        I  E L +     ++A  I   I   
Sbjct: 377 SATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVY 436

Query: 494 ---EKKESNFRSVVERFNSLHEHFTSS--IAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                +   F    +    L ++ +       +HG +    +E  +  F+NG   +L+AT
Sbjct: 437 SGFHGRTIIFCETKKEAQELSQNVSIKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVAT 496

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +  +++  +      + +H+  GR GR      CI  Y            
Sbjct: 497 NVAARGLDIPEVDLVVQSSPPKDVESYIHR-SGRTGRAGRTGICICFY------------ 543

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
                 ++ + +A+             ++Q    KF          +++ + KDA  +L 
Sbjct: 544 ----QHKEEYQLAQ-------------VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLD 586

Query: 669 QDP 671
             P
Sbjct: 587 SVP 589


>gi|25809056|gb|AAN74636.1| DEAD box RNA helicase [Pisum sativum]
          Length = 413

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 128/348 (36%), Gaps = 43/348 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AGGQAVIMA 328
            P+  Q+  I    +          I Q   G+GKT      +   ++      QA+++A
Sbjct: 62  KPSAIQQRGIVPFCKGHDV------IQQAQSGTGKTATFCSGVLQQLDYNVTQCQALVLA 115

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L        H+++GT     D
Sbjct: 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----SSGVHVVVGTPGRVFD 171

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L   
Sbjct: 172 MLRRQSLHPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEAL--- 228

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKK- 496
                   +IT K    KP++ ++       E I++  V +  E  K   +C   E    
Sbjct: 229 --------EITRKFMN-KPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAI 279

Query: 497 -----ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                  N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             GIDV   S++I  +        LH++ GR GR       I   +  
Sbjct: 340 ARGIDVQQVSLVINFDLPTQPENYLHRI-GRSGRFGRKGVAINFVNKE 386


>gi|293397166|ref|ZP_06641440.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582]
 gi|291420637|gb|EFE93892.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582]
          Length = 447

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 128/361 (35%), Gaps = 38/361 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
            PT  Q  AI  +L+          +     G+GKT    + +   +             
Sbjct: 23  EPTPIQRQAIPVVLEGRD------LMASAQTGTGKTAGFTLPVLQLLSKHDHAVKGRRPV 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E ++ Y+++ ++   ++ G +    +   L     G   I++ T
Sbjct: 77  RALILTPTRELAAQIGENVQAYSKHLRLRSLVVFGGVSINPQMMKLR----GGVDILVAT 132

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D     ++   K+ ++++DE  R      +           +L    P  + L+ 
Sbjct: 133 PGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDI------RRVLSKLPPKRQNLLF 186

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I  +  K     P    +   N   E IE+    + + +K   +   I E   
Sbjct: 187 SATFSDEIKGLASK-LLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMIGEGDW 245

Query: 498 SNFRSVVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                        N L E         A IHG  S   +   +  FK+G  ++L+AT + 
Sbjct: 246 RQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+     ++     +     +H++ GR GR E     I L      K       +L
Sbjct: 306 ARGLDIDQLPHVVNYELPNVPEDYVHRI-GRTGRAERTGEAISLVCVDEHKLLRDIERLL 364

Query: 612 K 612
           K
Sbjct: 365 K 365


>gi|262403204|ref|ZP_06079764.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
 gi|262350703|gb|EEY99836.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
          Length = 448

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 67/380 (17%), Positives = 128/380 (33%), Gaps = 29/380 (7%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQAVI 326
           T+ Q+ AI   +           +     GSGKTL  ++ M               + VI
Sbjct: 25  TEIQQQAIPLTIAGRD------LLASSKTGSGKTLAFVLPMLHKSLKTKAFSAKDPRGVI 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           + P   LA+Q Y  ++           +ITG      + KAL R        I+ T    
Sbjct: 79  LVPTRELAKQVYGELRSMLGGLSYTATVITGGENFNDQVKALAR----GPRFIVATPGRL 134

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            D + +  L L  ++        + L L        +         +TL+ ++  D    
Sbjct: 135 ADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHADV 194

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------ 500
                     P +  I   +   + I +   +         +  +I    +         
Sbjct: 195 NDMAMEMLNDPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADADYRQVIIFTA 254

Query: 501 -RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R+  +R              + G ++   + ++M  F+    K+L+ T V   G+D+  
Sbjct: 255 TRADTDRLTEKLNKNNLKAVALSGNLNQTQRNTIMGQFERTVFKILVTTDVASRGLDIPS 314

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +I  +        +H++ GR GR       + L  P    +S+ R+      E  F 
Sbjct: 315 VTHVINFDMPKHTEEYVHRI-GRTGRAGNKGDAMSLVGPK-DWDSFKRVEAFLQQEIQFD 372

Query: 620 IAEEDLKQRKEGEILGIKQS 639
           +  E L+ + +G  L  +Q+
Sbjct: 373 V-MEGLEGKFKG--LKPRQA 389


>gi|300795358|ref|NP_001177973.1| probable ATP-dependent RNA helicase DDX43 [Mus musculus]
 gi|149259807|ref|XP_001480973.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like isoform 1
           [Mus musculus]
          Length = 646

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 130/365 (35%), Gaps = 39/365 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---------AGG 322
            PT  Q  A   +LQ +        I     G+GKTL  L+     ++          G 
Sbjct: 262 KPTPIQSQAWPIVLQGID------LIGVAQTGTGKTLSYLMPGFIHLDSQPLAREQRNGP 315

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             +++ P   LA Q      KY+      V +  G      R   ++ ++ G   III T
Sbjct: 316 GMLVLTPTRELALQVEAECSKYSYGDLKSVCVYGGG----DRDGQIQDVSKG-VDIIIAT 370

Query: 383 HALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D      +    +  +++DE  +           K      +L+   P  +T++ 
Sbjct: 371 PGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMK------ILLDVRPDRQTIMT 424

Query: 438 TSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
           ++     + ++ +       I  V    ++ ++ + + I              ++     
Sbjct: 425 SATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIITTEEEKRTHIQTFLENMSP 484

Query: 494 EKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
           + K   F S     + L         S+  +HG     D+E  +++FK G  ++LIAT +
Sbjct: 485 KDKVIVFVSRKAVADHLSSDLILRHISVESLHGNREQSDREKALENFKTGKVRILIATDL 544

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+DV D + +   +        +H++ GR GR       I L      + +   +++
Sbjct: 545 ASRGLDVHDITHVYNYDFPRNIEEYVHRV-GRTGRAGRTGMSITLITRNDWRVATELINI 603

Query: 611 LKNTE 615
           L+   
Sbjct: 604 LERAN 608


>gi|229510271|ref|ZP_04399751.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229517598|ref|ZP_04407043.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229605408|ref|YP_002876112.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|229345634|gb|EEO10607.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229352716|gb|EEO17656.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229371894|gb|ACQ62316.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
          Length = 416

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 134/343 (39%), Gaps = 31/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            P+  Q   I  +L               + GSGKTL   + +   ++     QA+++ P
Sbjct: 32  EPSAIQTLVIPAMLTGKDV------FALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 85

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  E +        +    + G + +  ++ AL        +I++ T     D 
Sbjct: 86  TRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAE----NPNILVATTGRLFDL 141

Query: 389 ---SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               ++  ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 142 TQSGLRLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTAGVRQTVMCSATFSDD 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 195 LKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 254

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +     ++HG  S  ++E+ +  FKNGT ++LIAT ++  GI +  
Sbjct: 255 AKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATDLLARGIHIEL 314

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGE-EISSCILLYHPPLS 601
             ++I           +H++ GR  R      +  L+ H  + 
Sbjct: 315 LPVVINFELPMHAETYVHRV-GRTARAGQHGIALSLVCHGEMD 356


>gi|156502690|ref|YP_001428756.1| DEAD/DEAH box helicase family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|290953085|ref|ZP_06557706.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313716|ref|ZP_06804297.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica URFT1]
 gi|156253293|gb|ABU61799.1| DEAD/DEAH box helicase family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 441

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 140/373 (37%), Gaps = 41/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
            PT  Q  AI  +L+          +     G+GKT    + +   +    +A       
Sbjct: 23  KPTPIQAQAIPIVLKG------NDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQANRIKT 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I+ Y  NT I   +I G +    +   L +       I+I T  
Sbjct: 77  LILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSNNPQMMKLRK----GVEILIATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L   ++DE  R      +   +K    H LL       +TL+ ++
Sbjct: 133 RLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKK---IHNLL---PKKLQTLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I  +  +     P       +N   + I +    L +  K   +   I+++    
Sbjct: 187 TFSSEIKNLANEFLN-NPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  ++   + +    +   S + IHG  S   +   +  FK+    +L+AT +   
Sbjct: 246 VLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     +I  +  +     +H++ GR GR  +    I L     S +    LS +++
Sbjct: 306 GIDIAQLPCVINLDLSNVAEDYVHRI-GRTGRAGQEGLAISLV----SADEVESLSNIEH 360

Query: 614 TEDGFLIAEEDLK 626
              G L+  E+L+
Sbjct: 361 LI-GHLLPREELE 372


>gi|91773889|ref|YP_566581.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
           6242]
 gi|9581858|gb|AAF89099.1|AF199442_1 DEAD-box RNA helicase [Methanococcoides burtonii]
 gi|91712904|gb|ABE52831.1| Dead box RNA helicase [Methanococcoides burtonii DSM 6242]
          Length = 522

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 74/361 (20%), Positives = 132/361 (36%), Gaps = 25/361 (6%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAP 329
            PT+ Q+ AI  IL+          I     GSGKTL     +   +E   G +A+++ P
Sbjct: 24  EPTEIQKMAIPLILEGKD------IIGGAATGSGKTLAFGCGIIQKIEKGNGIRALVLTP 77

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
              LA+Q    +K+++++ Q+ V  I G +    + + LER     A +++ T     D 
Sbjct: 78  TRELAEQVQNSLKEFSRHKQLRVAPIYGGVAINPQIRQLER-----ADVVVATPGRLLDH 132

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           I+   + L  V E        R+           ++       +T++ ++    DI  ++
Sbjct: 133 IERGTIDLGDV-EILVLDEADRMLDMGFIDDVEEIIDECPSDRQTMMFSATVSKDIQYLS 191

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK-----ESNFRSVV 504
            K     P K         D++ +    V  + K +  +     EK        N RS V
Sbjct: 192 SKYMN-NPSKVFAKAYVDSDKLKQVYIDVPKKMKFSLLVHLLKSEKSGLVMVFCNTRSNV 250

Query: 505 ERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +               IHG  +   ++S +  F +     L+ T V   G+D+   S + 
Sbjct: 251 DFVQKNLRKNDIDAIAIHGGHTQAKRKSTLSKFHSSNAHALVCTDVAARGLDIPHVSHVY 310

Query: 565 IENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEED 624
             +        +H++ GR  R       I +              + +N    F I  ED
Sbjct: 311 NFDIPDDPSEYVHRI-GRTARAGREGKVINVVADVDKGGFTRLSKMHRN----FKIERED 365

Query: 625 L 625
           L
Sbjct: 366 L 366


>gi|268573013|ref|XP_002641484.1| Hypothetical protein CBG09775 [Caenorhabditis briggsae]
          Length = 814

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 154/455 (33%), Gaps = 45/455 (9%)

Query: 199 FPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLM----RKQFKKEIGIP 254
            P I      I  P+  K+F       +RL Y +++  Q  + L     +          
Sbjct: 210 LPDIDH--TQIQYPKFNKNFYEEHDDIKRLQYLDIIRLQNTMNLRVGGLKPPRPVCSFAH 267

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            + +  + + I ++    PT  Q  AI   L           +     GSGKT   L   
Sbjct: 268 FSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDV------LGIAKTGSGKTAAYLWPA 321

Query: 315 AAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
                         G  AVI+ P   LA Q Y+  K++ +   I V    G   +  +  
Sbjct: 322 IVHTMDQPDLKEGEGPVAVIVVPTRELAIQVYQEAKRFCKVYNINVICAYGGGSKWEQSN 381

Query: 367 ALERIAHGQAHIIIGTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
            L+      A +++ T     D ++     + +   ++ DE  R          +  +  
Sbjct: 382 ELQNE---GAEMVVCTPGRIIDLVKMEATNFLRTTFLVFDEADRMFDMGFEAQVKSISDH 438

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLS- 480
                   P  + L+ ++     + ++  + A   P++ V   +   +  IE+   V+  
Sbjct: 439 VR------PDRQCLMFSATFKQKVERLA-RDALVDPVRIVQGEVGEANADIEQKVYVMQN 491

Query: 481 EGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           +  K +W+   + E             +   E      +     I ++HG M   ++   
Sbjct: 492 QDVKFHWLIRNLVEFASLGKVLIFVTKKLDSEDLAKKLKLKDFDIVLLHGDMLQAERNEN 551

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           +  F+    ++L+AT V   G+D+ +   ++  +        +H++ GR GR     +  
Sbjct: 552 LLKFRK-KSQILVATDVAARGLDISEIRTVVNFDMARDIDTHVHRI-GRTGRAGHRGTAY 609

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
            L      +     +  L++          DL  +
Sbjct: 610 TLVTEKDIETVGHLVKNLESVSQEVPKPLMDLAMK 644


>gi|332218194|ref|XP_003258244.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Nomascus leucogenys]
          Length = 715

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 139/423 (32%), Gaps = 72/423 (17%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------GQAV 325
             Q      +            I Q   G+GKT    I +   +             Q +
Sbjct: 143 PIQAKTFHHVYSGKD------LIAQARTGTGKTFSFAIPLIEKLHEELQDRKRGRPPQVL 196

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q  +     T+  ++ V    G  P   +    ER+ +G   I++GT   
Sbjct: 197 VLAPTRELANQVSKDFSDITK--KLSVACFYGGTPYGGQ---FERMRNG-IDILVGTPGR 250

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +D IQ  KL        +L  VD+    G   +++              +   P+TL+ 
Sbjct: 251 IKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKD----SEDDPQTLLF 306

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVI--ERLKVVLSEGKKAYWICPQIEEK 495
           ++     +  + +K       +  +I        I  E L +     ++A  I   I   
Sbjct: 307 SATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVY 366

Query: 496 KESNFR-----SVVERFNSLHEH--FTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                R        +    L ++         +HG +    +E  +  F+NG+  +L+AT
Sbjct: 367 SGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVAT 426

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +  ++I  +      + +H+  GR GR      CI  Y            
Sbjct: 427 NVAARGLDIPEVDLVIQSSPPKDVESYIHR-SGRTGRAGRTGVCICFYQHKEEYQ----- 480

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
                                   ++ ++Q    KF          +++ + KDA  +L 
Sbjct: 481 ------------------------LVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLD 516

Query: 669 QDP 671
             P
Sbjct: 517 SVP 519


>gi|118092589|ref|XP_421574.2| PREDICTED: similar to Gu protein [Gallus gallus]
          Length = 690

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 144/424 (33%), Gaps = 74/424 (17%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---------GGQAV 325
             Q    + I            I Q   G+GKT    I +   +++           + +
Sbjct: 150 PVQVKTFQPIYDGKD------LIAQARTGTGKTFSFAIPLTEKLQSVSQDEKRGRSPKVL 203

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++ P   LA Q  +  K  T+  ++ V    G  P   +   L         I++GT   
Sbjct: 204 VLVPTRELAIQVAKDFKNLTR--KLSVACFYGGTPYKAQFDLL----KNGIDILVGTPGR 257

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +D IQ  KL        +L  VD     G  ++++              +   P+TL+ 
Sbjct: 258 IKDHIQNSKLDLSNVKHVVLDEVDHMLDMGFAEQVEEILGFAYKKG----SENSPQTLLF 313

Query: 438 TSLGDIDISKITEKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE-- 493
           ++     +  + +K    +  +  +I     R    +E L +     ++A  +   I+  
Sbjct: 314 SATCPRWVYDVAKKYMKGEYEQVDLIGKKTQRTATTVEHLAIQCRSSQRAEVLGDIIQVY 373

Query: 494 ---EKKESNFRSVVERFNSLH--EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                +   F    +  N L            +HG +    +E  +  F+NG  ++LIAT
Sbjct: 374 SGSHGRTIVFCETKKEANELALNSALKQEAQSLHGDIPQKQREVTLKGFRNGVFEVLIAT 433

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +  ++I  +      + +H+  GR GR      CI  Y            
Sbjct: 434 NVAARGLDIPEVDLVIQCSPPKDVDSYIHR-SGRTGRAGRTGICICFY------------ 480

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILG-IKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
                             QRKE ++L  ++Q     F          +++ +  DAK  L
Sbjct: 481 ------------------QRKEEDLLKQVEQKAGITFRRIGVPSATDIIKASSDDAKKCL 522

Query: 668 TQDP 671
              P
Sbjct: 523 DAVP 526


>gi|89256570|ref|YP_513932.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315000|ref|YP_763723.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010034|ref|ZP_02274965.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|89144401|emb|CAJ79691.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129899|gb|ABI83086.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 441

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 140/373 (37%), Gaps = 41/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
            PT  Q  AI  +L+          +     G+GKT    + +   +    +A       
Sbjct: 23  KPTPIQAQAIPIVLKG------NDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQANRIKT 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I+ Y  NT I   +I G +    +   L +       I+I T  
Sbjct: 77  LILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK----GVEILIATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L   ++DE  R      +   +K    H LL       +TL+ ++
Sbjct: 133 RLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKK---IHNLL---PKKLQTLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I  +  +     P       +N   + I +    L +  K   +   I+++    
Sbjct: 187 TFSSEIKNLANEFLN-NPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  ++   + +    +   S + IHG  S   +   +  FK+    +L+AT +   
Sbjct: 246 VLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     +I  +  +     +H++ GR GR  +    I L     S +    LS +++
Sbjct: 306 GIDIAQLPCVINLDLSNVAEDYVHRI-GRTGRAGQEGLAISLV----SADEVESLSNIEH 360

Query: 614 TEDGFLIAEEDLK 626
              G L+  E+L+
Sbjct: 361 LI-GHLLPREELE 372


>gi|153821037|ref|ZP_01973704.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae B33]
 gi|255746274|ref|ZP_05420221.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|126521411|gb|EAZ78634.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae B33]
 gi|255736028|gb|EET91426.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
          Length = 406

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 134/343 (39%), Gaps = 31/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            P+  Q   I  +L               + GSGKTL   + +   ++     QA+++ P
Sbjct: 22  EPSAIQTLVIPAMLTGKDV------FALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 75

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  E +        +    + G + +  ++ AL        +I++ T     D 
Sbjct: 76  TRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAE----NPNILVATTGRLFDL 131

Query: 389 ---SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               ++  ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 132 TQSGLRLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTAGVRQTVMCSATFSDD 184

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 185 LKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 244

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +     ++HG  S  ++E+ +  FKNGT ++LIAT ++  GI +  
Sbjct: 245 AKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATDLLARGIHIEL 304

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGE-EISSCILLYHPPLS 601
             ++I           +H++ GR  R      +  L+ H  + 
Sbjct: 305 LPVVINFELPMHAETYVHRV-GRTARAGQHGIALSLVCHGEMD 346


>gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
 gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
          Length = 508

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 124/358 (34%), Gaps = 30/358 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
            PT  Q  AI  +L           +     G+GKT    + +   +             
Sbjct: 64  KPTPIQAQAIPIVLAGRDV------MGAAQTGTGKTASFSLPIIQRLLPLASTSASPARH 117

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             +A+I+ P   LA Q    +  Y ++T +   ++ G +    +   L R       I+I
Sbjct: 118 PVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQTAELRR----GVEILI 173

Query: 381 GTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
            T     D +Q     L  V +        R+           +L       +TL+ ++ 
Sbjct: 174 ATPGRLLDHVQQKSTSLAQV-QMLVLDEADRMLDMGFLPDLQRILNLLPSQRQTLLFSAT 232

Query: 441 GDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK---- 496
              +I K+      R P+   +   N     + ++   ++E  K   +   I +++    
Sbjct: 233 FSAEIKKLASTYL-RDPVTIEVARSNSTASNVRQIVFEVAEPDKQAAVVQLIRQRELKQV 291

Query: 497 --ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
               N +    R     E        IHG  S  ++   +D+FK G  + L+AT V   G
Sbjct: 292 IVFCNSKIGASRLAKQLERDGVVATAIHGDRSQSERMQALDAFKRGEIEALVATDVAARG 351

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +D+ +   +I  +        +H++ GR GR       + L+     K       ++K
Sbjct: 352 LDIAELPAVINFDLPFNAEDYVHRI-GRTGRAGASGDALSLFSGNERKQLADIEKLIK 408


>gi|238897524|ref|YP_002923203.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465281|gb|ACQ67055.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 414

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 127/376 (33%), Gaps = 30/376 (7%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q  AI  IL       +   +     G+GKT    + +   +             
Sbjct: 23  APTPIQRQAIPLILA------KRDLMASAQTGTGKTAAFTLPLLQLLSQNTALVKGRRQI 76

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  + +  Y+Q  Q+    + G +    +   L     G   I+I T
Sbjct: 77  RALILTPTRELAAQIAQNVSDYSQYLQLRSLAVFGGVSINPQTMKLR----GGVDILIAT 132

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D      L L  + E        R+           +L       ++L+ ++   
Sbjct: 133 PGRLLDLEHQNALALSQI-EILVLDEADRMLDMGFIHDIRRILAKLPKKRQSLLFSATFS 191

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRS 502
            +I  ++ K     P    + P N   + I +    + + +K   +   I          
Sbjct: 192 NEIKSLSTKLLTH-PAFVEVAPCNTTAQQISQYVHFVDKNRKRALLSHMIGRGNWQQVLV 250

Query: 503 VVER---FNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
                   N L E         A IHG  S   +   +  FK G   +L+AT +   G+D
Sbjct: 251 FNRTKHGANHLSEQLNKDGITAAAIHGNKSQGARTRALADFKEGKITVLVATDIAARGLD 310

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTED 616
           +     ++  +  H     +H++ GR GR +     I L      K       +LK    
Sbjct: 311 IDQLPYVVNYDLPHIPEDYVHRI-GRTGRAQHAGEAISLVCVDEDKLLKDIERLLKREIP 369

Query: 617 GFLIA--EEDLKQRKE 630
              ++  E DL+ + E
Sbjct: 370 RMAVSGYEPDLRIKAE 385


>gi|255954845|ref|XP_002568175.1| Pc21g11430 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589886|emb|CAP96040.1| Pc21g11430 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 496

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 92/401 (22%), Positives = 159/401 (39%), Gaps = 51/401 (12%)

Query: 266 LRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
           L++ P +PT  Q +    +            I   + GSGKTL   +     +       
Sbjct: 97  LKSFP-APTPIQSTTWPLLFAGRDV------IGIAETGSGKTLGFGLPCLKKLIDSKSSK 149

Query: 323 ----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               +AVI++P   LA Q Y+ + K+  + +  V  I G + +  +R+AL+     +A I
Sbjct: 150 PCQPKAVIISPTRELAMQIYDQLVKFGHHEKTQVTCIYGGVGKDEQRRALQ-----KAAI 204

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRF---GVQQRLKLT---QKATAPHVLLMT 427
           ++ T    +D     SI   K+  +++DE  R    G +Q +K        +    ++ T
Sbjct: 205 VVATPGRLKDLQNDGSIDLGKVNYLVLDEADRMLDKGFEQDIKDILKPMPVSRRQTVMFT 264

Query: 428 ATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA 485
           AT     R L  T +       I   P+      T      RI +V+E +     EG+  
Sbjct: 265 ATWPRSVRDLAATFMKTPVTVTIGGDPSADPRANT------RIKQVVEVVDGREKEGRLV 318

Query: 486 YWICPQIEEKKESN-------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFK 538
             +      +K          ++    R  +L  +   ++A IHG ++  D+   +D+FK
Sbjct: 319 QLLTKSQRGQKSPEKVLVFCLYKKEAMRIENLIRNKGFAVAGIHGDLNQSDRFRNLDAFK 378

Query: 539 NGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
            G   +LIAT V   G+D+ +  ++I           +H++ GR GR       I ++  
Sbjct: 379 KGNATVLIATDVAARGLDIPNVKLVINVTFPLTVEDYVHRI-GRTGRAGADGLAITMFTE 437

Query: 599 PLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQS 639
                S   ++VLK          EDL   K G  +  KQ 
Sbjct: 438 NDKGLSGGLINVLKAAN---QDVPEDL--LKFGTTVKKKQH 473


>gi|254367888|ref|ZP_04983908.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
           holarctica 257]
 gi|134253698|gb|EBA52792.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
           holarctica 257]
          Length = 441

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 140/373 (37%), Gaps = 41/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
            PT  Q  AI  +L+          +     G+GKT    + +   +    +A       
Sbjct: 23  KPTPIQAQAIPIVLKG------NDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQANRIKT 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I+ Y  NT I   +I G +    +   L +       I+I T  
Sbjct: 77  LILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK----GVEILIATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L   ++DE  R      +   +K    H LL       +TL+ ++
Sbjct: 133 RLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKK---IHNLL---PKKLQTLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I  +  +     P       +N   + I +    L +  K   +   I+++    
Sbjct: 187 TFSSEIKNLANEFLN-NPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  ++   + +    +   S + IHG  S   +   +  FK+    +L+AT +   
Sbjct: 246 VLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     +I  +  +     +H++ GR GR  +    I L     S +    LS +++
Sbjct: 306 GIDIAQLPCVINLDLSNVAEDYVHRI-GRTGRAGQEGLAISLV----SADEVESLSNIEH 360

Query: 614 TEDGFLIAEEDLK 626
              G L+  E+L+
Sbjct: 361 LI-GHLLPREELE 372


>gi|115468814|ref|NP_001058006.1| Os06g0602400 [Oryza sativa Japonica Group]
 gi|113596046|dbj|BAF19920.1| Os06g0602400 [Oryza sativa Japonica Group]
          Length = 484

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/358 (18%), Positives = 132/358 (36%), Gaps = 47/358 (13%)

Query: 295 LRILQGDVGSGKTLVALIAM-------------------AAAVEAGGQAVIMAPIGILAQ 335
             +     GSGKT    + +                        A  +A+++AP   LA 
Sbjct: 5   DLMACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAKPRALVLAPTRELAA 64

Query: 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL 395
           Q  E  KK++  T + V +  G  P  ++ + LER     A I++ T     D ++  K+
Sbjct: 65  QINEEAKKFSFQTGLRVVVAYGGTPMYNQLRDLER----GADILVATPGRLVDMVERSKV 120

Query: 396 ILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITE 450
            L  +     DE  R          Q       + M    + +T++ ++    +I ++  
Sbjct: 121 SLEAIKYLVMDEADRMLDMGFEP--QIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLAS 178

Query: 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK------------ES 498
                    T +  +    ++I +   +LS+G+K  ++   ++ +               
Sbjct: 179 DFLSNYIFIT-VGRVGSSTDLIMQKVELLSDGEKRGYLLDLLQRQSVGVANSKLQQPLTL 237

Query: 499 NFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
            F       +SL     S       IHG  +  ++ES + SFK G   +++AT V   G+
Sbjct: 238 VFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGL 297

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           DV + + +I  +        +H++ GR GR  +  S    +       +   L ++  
Sbjct: 298 DVPNVAHVINYDLPKSIEDYVHRI-GRTGRAGKAGSATAFFTESDHSLAKGLLELMTE 354


>gi|70728927|ref|YP_258676.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens Pf-5]
 gi|68343226|gb|AAY90832.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens Pf-5]
          Length = 473

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/362 (20%), Positives = 133/362 (36%), Gaps = 37/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA------AAVEAGGQAV 325
            PT  Q +AI   LQ    +      +    GSGKT   ++ +       A +    + +
Sbjct: 49  EPTPVQAAAIPLALQGRDLR------VTAQTGSGKTAAFVLPILNRLIGPAKIRVSIKTL 102

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + +++++Q T I   +ITG      +   L ++      I+IGT   
Sbjct: 103 ILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV----PDILIGTPGR 158

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLKLT--QKATAPHVLLMTATPI---P 432
             + +    L L  V        D     G  + ++    +       +L +AT      
Sbjct: 159 MLEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTMLFSATTGGSGL 218

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R +V   L + +  ++       +  +  II  +      + +  +L+       I    
Sbjct: 219 REMVAKVLNNPEHLQLNSVSQLNETTRQQIITADHNQHKEQIVNWLLANETYQKAIVFT- 277

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N R++ +R             ++HG     D++  +D  K G  K+L+AT V  
Sbjct: 278 ------NTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVATDVAA 331

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
            G+DV    ++I  +    G   +H++ GR GR       I L          +    LK
Sbjct: 332 RGLDVDGLDLVINFDMPRSGDEYVHRI-GRTGRAGNDGLAISLICHGDWNLMSSIERYLK 390

Query: 613 NT 614
            +
Sbjct: 391 QS 392


>gi|39104531|dbj|BAC98030.2| mKIAA0801 protein [Mus musculus]
          Length = 1044

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/376 (20%), Positives = 147/376 (39%), Gaps = 30/376 (7%)

Query: 252 GIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVAL 311
            +   +  KI   + ++    PT  Q  AI  I+           I     GSGKT+  L
Sbjct: 391 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRD------LIGIAKTGSGKTIAFL 444

Query: 312 IAMAAAVEA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
           + M   +          G  AVIM P   LA Q  +  KK+++   + V  + G    + 
Sbjct: 445 LPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 504

Query: 364 RRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHV 423
           +   L+R     A II+ T     D +        +    + F +   L +        +
Sbjct: 505 QIAELKR----GAEIIVCTPGRMIDMLAANSGKSRVF--YYLFSLLFVLDMIFVEADLRI 558

Query: 424 LLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGK 483
           +     P  +T++ ++     +  +  +    KPI+  +   + +   +E+  +V+ E K
Sbjct: 559 VD-NVRPDRQTVMFSATFPRAMEALARR-ILSKPIEVQVGGRSVVCSDVEQQVIVIEEEK 616

Query: 484 KAYWICPQIEEKKE----SNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDS 536
           K   +   +   +E      F    E  + L +    +      +HG +   D++S+++ 
Sbjct: 617 KFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIIND 676

Query: 537 FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           FKNGTCKLL+AT+V   G+DV    +++  +  +     +H+  GR GR           
Sbjct: 677 FKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR-AGRTGRAGNKGYAYTFI 735

Query: 597 HPPLSKNSYTRLSVLK 612
               ++ +   +  L+
Sbjct: 736 TEDQARYAGDIIKALE 751


>gi|327282752|ref|XP_003226106.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Anolis
           carolinensis]
          Length = 697

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 142/441 (32%), Gaps = 43/441 (9%)

Query: 198 SFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGI--PI 255
             P + + F       K            R   + +    +     R             
Sbjct: 239 DLPPLEKCFYKES--PKIASMSQEEADSWRKENNNITCDDLKEGEKRCIPNPICKFEDAF 296

Query: 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA 315
                I   I +N    PT  Q  A   ILQ          I     G+GKTL  L+   
Sbjct: 297 KHYSDIMANIRKNGFLKPTPIQAQAWPIILQGYD------LIGIAQTGTGKTLAYLMPGF 350

Query: 316 AAVE---------AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRK 366
             ++          G   +++ P   LA Q      KY+      + I  G      RR 
Sbjct: 351 IHLDLQPIPREKRGGPGMLVLIPTRELALQVEAECSKYSYKGIKSICIYGGG----DRRG 406

Query: 367 ALERIAHGQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421
            +  ++ G   I+I T     D      I    +  +++DE  R           K    
Sbjct: 407 QINVVSKG-VDIVIATPGRLNDLQMNNFINLRSITYLVLDEADRMLDMGFEPQIMK---- 461

Query: 422 HVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKV 477
             +L+   P  +T++ ++     + ++ +       I  V    +  +N +++ +  +  
Sbjct: 462 --ILLDIRPDRQTVMTSATWPDGVRRLAKSYLKDPMIVYVGTLDLAAVNTVEQRVVVIPE 519

Query: 478 VLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKESVM 534
                   ++I     E K   F       + L   F+     +  +H      D+E  +
Sbjct: 520 EEKRAFTRFFIDSMKSEDKVIIFVGKKLTADDLSSDFSLQGIPVQSLHSNREQCDREQAL 579

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           + F+ G  ++L+AT +   G+DV D + +   +        +H++ GR GR       + 
Sbjct: 580 EDFRQGRVRVLVATDLASRGLDVQDITHVFNFDFPRNIEEYVHRV-GRTGRAGRTGEAVT 638

Query: 595 LYHPPLSKNSYTRLSVLKNTE 615
           L      + +   + +L+   
Sbjct: 639 LVTRNDWRVASELIEILERGN 659


>gi|156973083|ref|YP_001443990.1| ATP-dependent RNA helicase DbpA [Vibrio harveyi ATCC BAA-1116]
 gi|156524677|gb|ABU69763.1| hypothetical protein VIBHAR_00762 [Vibrio harveyi ATCC BAA-1116]
          Length = 459

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 155/444 (34%), Gaps = 62/444 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ ++  T  Q  ++  IL      N+   I QG  GSGKT    + + + +      
Sbjct: 19  LESLNYTHMTPIQALSLPAIL------NQRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFR 72

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q  + I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 73  VQSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH----GAHILV 128

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT     D ++  +        L+L   D     G Q  L           ++  A    
Sbjct: 129 GTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDAL---------DAIIDAAPKQR 179

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           +TL+ ++     I +I ++   + P    +   +    + +    V     +   +   +
Sbjct: 180 QTLLFSATFPEKIEQIAQR-IMQSPEMIKVESTHDTSSIAQYFYNVEGSEARDEALANLL 238

Query: 493 EEKKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              +        N +  V+       H   S+  +HG +   +++  +  F N +  +L+
Sbjct: 239 LTHQPESAVVFCNTKKEVQNVADELHHKGFSVVDLHGDLEQRERDQALVQFANKSVSILV 298

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV +   +            +H++ GR GR          +          
Sbjct: 299 ATDVAARGLDVDNLDAVFNFELSRDPEVHVHRI-GRTGRAGSKGLAFSFFGEKDGLRVAR 357

Query: 607 RLSVL-----------KNTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLI 646
               L           K+T+  +      +            G+ILG    ++G+    +
Sbjct: 358 IEEYLEMDVVPATLPAKSTQQPYQAKMVTINIDGGKKQKVRAGDILGCLTGKNGITGAQV 417

Query: 647 A--QPELHDSLLEIARKDAKHILT 668
              Q     S + + +  AK  L 
Sbjct: 418 GKIQLMAMRSYVAVEKSLAKKALQ 441


>gi|293602448|ref|ZP_06684894.1| ATP-dependent RNA helicase [Achromobacter piechaudii ATCC 43553]
 gi|292819210|gb|EFF78245.1| ATP-dependent RNA helicase [Achromobacter piechaudii ATCC 43553]
          Length = 597

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 125/370 (33%), Gaps = 38/370 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQA 324
           +PT  Q +AI   L           ++    GSGKT   ++     +         G Q 
Sbjct: 23  TPTAVQAAAIPQALAGHD------LMVSSQTGSGKTAAFMLPALHRIAQMPANKGVGVQV 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           +++ P   LA Q  E    Y +    +    + G MP   + KAL R    +  +++ T 
Sbjct: 77  LVLTPTRELALQVTEATATYGRKLADLRTATVVGGMPYGAQLKALSR----RVDVLVATP 132

Query: 384 ALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D +Q  ++ L  V     DE  R      ++  +       ++       +TL+ +
Sbjct: 133 GRLIDHLQSGRVKLNTVHTLVLDEADRMLDMGFIEDIE------TIVSRLPEDRQTLLFS 186

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES 498
           +  D  I+K+  K   R P +  +         I +  +   +      +   +    + 
Sbjct: 187 ATLDGTIAKLAAK-MMRDPQRIEMAGAKEKHTNITQSLLYADDASHKMQLLDHVLRDAKL 245

Query: 499 NF-------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           +        +   +           + A +HG M+   +   +   + G  ++L+AT V 
Sbjct: 246 DQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLSQLQRGQLRILVATDVA 305

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             GIDV   S  +  +        +H++ GR GR         L               +
Sbjct: 306 ARGIDVQGISHAVNFDLPMQAEDYVHRI-GRTGRAGRNGLAFTLATHSERHKVRRIEHYI 364

Query: 612 KNTEDGFLIA 621
             +    +IA
Sbjct: 365 GQSITPEVIA 374


>gi|41248|emb|CAA36872.1| unnamed protein product [Escherichia coli]
 gi|315619429|gb|EFU99973.1| ATP-independent RNA helicase dbpA [Escherichia coli 3431]
          Length = 432

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/349 (18%), Positives = 130/349 (37%), Gaps = 24/349 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           T  Q +A+  IL     +      +Q   GSGKT    + +   ++A     QA+++ P 
Sbjct: 2   TPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPT 55

Query: 331 GILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    +++  +      +  + G  P   +R +L+       HII+ T     D 
Sbjct: 56  RELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIVATPGRLLDH 111

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +Q   + L  +          R+     + A   ++  A    +TL+ ++     I+ I+
Sbjct: 112 LQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAIS 170

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSV 503
            +   R P+   I   + +   IE+     S   K   +   +   +        N +  
Sbjct: 171 GR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 228

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +           S   +HG +   D++  +  F NG+ ++L+AT V   G+D+    ++
Sbjct: 229 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 288

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 289 VNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 336


>gi|298505039|gb|ADI83762.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
          Length = 446

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 131/358 (36%), Gaps = 34/358 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----GQAVIM 327
           +PT  Q  AI  ++        ++ + Q   G+GKT    + +   ++ G     +A+++
Sbjct: 23  TPTPIQAQAIPAVMAG----RDVMGLAQ--TGTGKTAAFALPILHRLQQGERGRVRALVI 76

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           AP   LA+Q  +      + T++    + G +    + + L+      A +++       
Sbjct: 77  APTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKA----GAEVVVACPGRLL 132

Query: 388 DSI--------QYYKLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTATPIPRTLVL 437
           D I        +   L+L   D+    G     R  L    +    LL +AT       L
Sbjct: 133 DHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPSRRQTLLFSATMPIDIRAL 192

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIE-RLKVVLSEGKKAYWICPQIEEKK 496
                +D   +  +     P  TV   +  +++ ++  L + L        +        
Sbjct: 193 AQEILVDPVTV--QVGNVAPAVTVAHALYPVEQHLKTPLLLELLRHTDTESVLIFTRT-- 248

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +   +R     E      A + G +S   +++ +D F++GT ++L+AT +   GID
Sbjct: 249 ----KHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTYQILVATDIAARGID 304

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           V   S +I  +      A +H++ GR GR         L          +    L  T
Sbjct: 305 VSQVSHVINYDIPDTAEAYIHRI-GRTGRAARSGDAFTLVTSDDGAMVRSIERSLGAT 361


>gi|253997010|ref|YP_003049074.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
           mobilis JLW8]
 gi|253983689|gb|ACT48547.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
          Length = 502

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 128/370 (34%), Gaps = 33/370 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +PT  Q +AI  +L           +     G+GKT    + +   +    +A       
Sbjct: 31  APTPIQANAIPLVLSG------GDLLAGAQTGTGKTAGFTLPILHLLSKKPRAEAAASRP 84

Query: 325 --VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
             ++++P   LA Q  E +K Y ++  +   +I G +    +   L++       I++ T
Sbjct: 85  RCLMLSPTRELAAQIEESVKTYGKHLPLTSTVIFGGVNANPQIARLKKP----LDILVAT 140

Query: 383 HALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGD 442
                D      + L  ++        + L +        +L +   P  R  +L S   
Sbjct: 141 PGRLLDHANQKNVDLSGIEILVLDEADRMLDMGFIRDIKKILAIL--PKQRQNLLFSATF 198

Query: 443 IDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN--- 499
            +  K         P    +   N   E++E+   ++ +  K   +   I+         
Sbjct: 199 SEEIKALADGLLHNPGFVEVARRNTASELVEQTVHMVPQAHKRDLVTHLIKHHDWKQVLV 258

Query: 500 ---FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
               +    R            A IHG  S   +   +  FK+G+ ++L+AT +   G+D
Sbjct: 259 FTRTKHGANRLAEKLIKDDIQAAAIHGNKSQGARTKALAQFKDGSMRVLVATDIAARGLD 318

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN--- 613
           +     ++     +     +H++ GR GR     + + L      K       ++K    
Sbjct: 319 IDQLPQVVNFELPNVPEDYVHRI-GRTGRAGSSGAAVSLVDREEIKLLKDIEKLIKREIP 377

Query: 614 --TEDGFLIA 621
             + +GF  A
Sbjct: 378 RVSVEGFTPA 387


>gi|254571525|ref|XP_002492872.1| RNA helicase in the DEAD-box family, necessary for prespliceosome
           formation [Pichia pastoris GS115]
 gi|238032670|emb|CAY70693.1| RNA helicase in the DEAD-box family, necessary for prespliceosome
           formation [Pichia pastoris GS115]
 gi|328353117|emb|CCA39515.1| ATP-dependent RNA helicase DDX46/PRP5 [Pichia pastoris CBS 7435]
          Length = 784

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/383 (16%), Positives = 141/383 (36%), Gaps = 51/383 (13%)

Query: 260 KIAQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV 318
           +    ++ ++ +  PT  Q  A+ +++           I     GSGKTL  L+ M   +
Sbjct: 224 QQFMSVIEDLKYEAPTPIQSEALPNLMSGKD------LIGIAKTGSGKTLAFLLPMFRQI 277

Query: 319 EA--------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
            +        G   VI+ P   LA Q ++  K + ++  +    + G    + +   +++
Sbjct: 278 ISQPDPESGEGPIGVILTPTRELALQIFKECKPFMKSLNLKGICVYGGASISQQISDIKK 337

Query: 371 IAHGQAHIIIGTHALFQDSI-----------QYYKLILVIVDEQHRFGVQQRLKLTQKAT 419
               + H  + T     D +           +   L+L   D     G + ++      T
Sbjct: 338 ----RVHFAVCTPGRLIDLLTANSGRVTNLSRTSYLVLDEADRMFDMGFEPQVMKIIPNT 393

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
                     P  +TLV ++     +  + +K     P++ ++   + + + I +   V+
Sbjct: 394 R---------PDRQTLVFSATFPPKMEALAKKVLN-NPLEVIVGEKSVVADTITQKVFVI 443

Query: 480 SEGKKAYWICPQIEEKKESNFR-------SVVERFNSLHEHFTSS---IAIIHGRMSDID 529
              ++   +   +   K  +            +  + L  +          +HG    +D
Sbjct: 444 DPQERFSKLLELLGTFKSKDPTGKVLVFVERQDSADVLLTNLLKRGYNAQSLHGGKEQMD 503

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           ++ ++  FK G   +L+AT+V   G+DV   +++I  ++ +     +H++ GR GR    
Sbjct: 504 RDFIIQDFKTGNSDILVATSVAARGLDVKRLNLVINYDSPNHMEDYVHRV-GRTGRAGST 562

Query: 590 SSCILLYHPPLSKNSYTRLSVLK 612
              +        + +Y     LK
Sbjct: 563 GEAVTFLTAKDYRAAYDVSRALK 585


>gi|256829773|ref|YP_003158501.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578949|gb|ACU90085.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 444

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 131/380 (34%), Gaps = 38/380 (10%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 + + ++   I      +PT  Q  AI  +L           +     G+GKT  
Sbjct: 1   MDFSSFSFDQRLNVGIRDCGYVTPTPIQIQAIPSVLAGKDV------LGLAQTGTGKTAA 54

Query: 310 ALIAMAAAVEAGG-------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
             + +   +   G       + +++AP   LA Q +E      + T I    + G + + 
Sbjct: 55  FALPLLQRMITDGISVRGPVRVLVLAPTRELALQIHETFISLGKQTGIRSAAVFGGVGET 114

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQK 417
            + KA       QA +++       D +    + L  V     DE  R      L     
Sbjct: 115 PQVKAAR-----QASVLVACPGRLLDLVNRGLVDLSHVNALVLDEADRMFDMGFLPDL-- 167

Query: 418 ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKV 477
                 ++       + L+ ++    +I KI ++   +  +  V +      E I     
Sbjct: 168 ----RRIMAKLPAKRQNLLFSATMPPEIRKIADQVLVQPAV--VQVSNTAPPEKIRHTLY 221

Query: 478 VLSEGKKAYWI---CPQIEEKKESNFRSVVERFNSLHEHFTSS---IAIIHGRMSDIDKE 531
            +S G+K   +     +        F     R  SL             + G +S   ++
Sbjct: 222 PVSAGQKMGLLEAYLGRTPHDCVLIFTRTKHRAKSLARKLEQKGMLATSLQGNLSQNRRQ 281

Query: 532 SVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISS 591
             +D F++G  ++++AT +   GID V  S ++  +      +  H++ GR GR ++   
Sbjct: 282 EALDGFRSGKYRIMVATDIAARGIDCVRISHVVNFDLPDTAESYTHRI-GRTGRADKSGE 340

Query: 592 CILLYHPPLSKNSYTRLSVL 611
            I L  P  S        +L
Sbjct: 341 AITLVSPEDSAQINAIERIL 360


>gi|227204273|dbj|BAH56988.1| AT3G13920 [Arabidopsis thaliana]
          Length = 398

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 61  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLA 114

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 115 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVFD 170

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 171 MLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 230

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + + + +  +E L          Y      +   
Sbjct: 231 RKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETL-------CDLYETLAITQSVI 283

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 284 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 343

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 344 VQQVSLVINFDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRD 385


>gi|18400210|ref|NP_566469.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|1170503|sp|P41376|IF4A1_ARATH RecName: Full=Eukaryotic initiation factor 4A-1; Short=eIF-4A-1;
           AltName: Full=ATP-dependent RNA helicase eIF4A-1;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 4
 gi|16554|emb|CAA46188.1| eukaryotic translation initiation factor 4A-1 [Arabidopsis
           thaliana]
 gi|11994363|dbj|BAB02322.1| eukaryotic translation initiation factor; RNA helicase [Arabidopsis
           thaliana]
 gi|14594805|emb|CAC43288.1| translation initiation factor eIF-4A1 [Arabidopsis thaliana]
 gi|15293047|gb|AAK93634.1| putative Eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|15450486|gb|AAK96536.1| AT3g13920/MDC16_4 [Arabidopsis thaliana]
 gi|20259055|gb|AAM14243.1| putative eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|20466101|gb|AAM19972.1| AT3g13920/MDC16_4 [Arabidopsis thaliana]
 gi|22655066|gb|AAM98124.1| unknown protein [Arabidopsis thaliana]
 gi|23397033|gb|AAN31802.1| putative eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|332641917|gb|AEE75438.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 412

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 61  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLA 114

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 115 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVFD 170

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 171 MLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 230

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + + + +  +E L          Y      +   
Sbjct: 231 RKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETL-------CDLYETLAITQSVI 283

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 284 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 343

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 344 VQQVSLVINFDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRD 385


>gi|316965399|gb|EFV50121.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
          Length = 1007

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/389 (20%), Positives = 139/389 (35%), Gaps = 50/389 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA--------AAVEAGGQ 323
            PT  Q  AI   LQ+         I   + GSGKT   LI +           V+ G  
Sbjct: 604 EPTPIQRQAIPIGLQNRDV------IGVAETGSGKTAAFLIPLLCFVMIKREEDVDQGPY 657

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           AVIMAP   LAQQ  E   K+     +    + G + +  +   L         I+I T 
Sbjct: 658 AVIMAPTRELAQQIEEEANKFGGPLGVRTVSVIGGLSREEQGFKLRMGCE----IVIATP 713

Query: 384 ALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLTQKATAPHVL----------- 424
               D ++   L+L           D+    G +  ++          L           
Sbjct: 714 GRLVDVLENRYLVLNQCTYVILDEADKMLDMGFEPYVQNILSYMPVTNLKPDTEEAEDEK 773

Query: 425 -----LMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
                  +     +T++ T+     + ++      R+P    I  I +  E +E++  ++
Sbjct: 774 ALLNNFYSKKKFRQTVMFTATMSSAVERLARNYL-RRPAVVYIGAIGKPTERVEQIVYMV 832

Query: 480 SEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESV 533
           SE +K   +   +E+  E       N +   +      E    +   +HG      ++  
Sbjct: 833 SESEKRKKLVQILEKGIEPPIIIFVNQKKGADLLARGLEKLGFNPCALHGGKGQDARDYA 892

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           + S K+G+  +L+AT V   GID+ D S+++  +         H++ GR GR  +    I
Sbjct: 893 LASLKDGSKDILVATDVAGRGIDIKDVSLVLNYDMAKSIEDYTHRI-GRTGRAGKSGKAI 951

Query: 594 LLYHPPLSKNSYTRLSVLKNTEDGFLIAE 622
                  ++  Y    +L  +      AE
Sbjct: 952 TFLTKEDNQVFYDLKQLLLESPVSSCPAE 980


>gi|170727393|ref|YP_001761419.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169812740|gb|ACA87324.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 447

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 134/386 (34%), Gaps = 39/386 (10%)

Query: 250 EIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV 309
                 +++ ++ Q +      +PT+ QE AI      +S K+ M        GSGKTL 
Sbjct: 1   MQFTEFSLDARLLQSLSHMGITTPTEIQEMAIPV---GLSGKDLM---ASSKTGSGKTLA 54

Query: 310 ALIAMAAAV-------EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQA 362
            L+     +       +   + +I+ P   LA Q Y  ++    NTQ     I G     
Sbjct: 55  FLLPAMQRIISTKALSKRDPRVLILLPTRELANQVYSQLRLLVANTQYKALKILGGENFN 114

Query: 363 HRRKALERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKL 414
            + KAL R      H ++ T     D +  +         LIL   D     G   +LK 
Sbjct: 115 DQAKALAR----DPHFVVATPGRLADHLAQHHFHLNGLELLILDEADRMLDLGFADQLKA 170

Query: 415 TQKATAP---HVLLMTAT---PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
              A        L+ +AT        +    L D     +       + I   I   + +
Sbjct: 171 INAAADHKRRQTLMFSATLNHNEINEIASELLKDPKHVAVGASNIENQDITQKIYLCDHL 230

Query: 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
           D     L+ +L  G++   I            R   +R          + A + G ++  
Sbjct: 231 DHKEALLQSILKRGEQKQVIIFT-------ATRQDTDRLAKKLAEEGFNTASLSGDLNQS 283

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588
            +  +MD F  G   +L+ T V   G+D+++ S++I  +   F    +H++ GR  R   
Sbjct: 284 ARNQIMDQFSRGMQDILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRI-GRTARAGA 342

Query: 589 ISSCILLYHPPLSKNSYTRLSVLKNT 614
               I    P    N       L  T
Sbjct: 343 KGDAISFVGPKDWVNFKQVQQFLSKT 368


>gi|332525968|ref|ZP_08402109.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332109519|gb|EGJ10442.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 500

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 120/363 (33%), Gaps = 42/363 (11%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG---------- 322
           PT  Q  AI  +LQ          +     G+GKT    + M   + A            
Sbjct: 24  PTPIQAQAIPAVLQG------GDLLAGAQTGTGKTAGFTLPMLQRLSASKPVRDSRGRIA 77

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+++ P   LA Q  E ++ Y +   +   ++ G +    +   L +       I++ 
Sbjct: 78  VRALVLTPTRELAAQVEESVRAYGKYLPLTSMVMFGGVGMQPQIDRLRK----GVDILVA 133

Query: 382 THALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQK-----ATAPHVLLMTATPI 431
           T     D      +   ++ ++++DE  R      +   +K           LL +AT  
Sbjct: 134 TPGRLLDHHGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLAVLPQKKQSLLFSATFS 193

Query: 432 PRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
                L    L    + ++  + A    I   + P+ R  +      ++         + 
Sbjct: 194 DEIKALADRLLNQPALIEVARRNATADTIAQKVHPVGREKKKELLAHLIRQGDWHQVLVF 253

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            +         +    R          +   IHG  S   +   +  FK GT ++L+AT 
Sbjct: 254 TR--------MKHGANRLAEYLNEQGITAMAIHGNKSQGARTKALAEFKAGTLQVLVATD 305

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           +   GID+     ++     +     +H++ GR GR       + L              
Sbjct: 306 IAARGIDIDQLPHVVNYELPNVPEDYVHRI-GRTGRAGASGEAVSLVCLDEEIFLRDIQR 364

Query: 610 VLK 612
           ++K
Sbjct: 365 LIK 367


>gi|198274601|ref|ZP_03207133.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135]
 gi|198272048|gb|EDY96317.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135]
          Length = 424

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 127/351 (36%), Gaps = 34/351 (9%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + F   T  QE  I  IL+          I     G+GKT   L+ +   +  GG  
Sbjct: 16  LDAMNFQECTPVQEHTIPVILEGKD------LIGVAQTGTGKTAAYLLPVLNQLSKGGYP 69

Query: 323 ----QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
                 +IM+P   LA Q  + ++ ++    +    + G        +  + +  G A +
Sbjct: 70  EDAINCIIMSPTRELAMQIDQQMEGFSYFMPVSSVAVYGGNDGIRFEQEKKGLTLG-ADV 128

Query: 379 IIGTHALFQDS-----IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           +I T            +   K+   I+DE  R        L    +   + ++   P  R
Sbjct: 129 VIATPGRLISHLSLGYVDLSKVSFFILDEADRM-------LDMGFSDDIMQIVKYLPKER 181

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
             ++ S       +   K     P++ V + +++  E I +   +  E +K   I    +
Sbjct: 182 QTIMFSATMPTKIQQLAKTILHDPVE-VKLAVSKPAEKIIQAAYICYEAQKLGIIQSLFQ 240

Query: 494 EKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            ++          +  V+      +    ++  +H  +    +E +M  F+N    +L+A
Sbjct: 241 SQQPERVIIFASSKLKVKEVTKALKRMKLNVGEMHSDLEQSQREEIMHEFRNRRIDILVA 300

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           T ++  GID+ D  ++I  +  H     +H++ GR  R       I     
Sbjct: 301 TDIVARGIDIDDIRLVINYDVPHDSEDYVHRI-GRTARANNDGCAITFVSE 350


>gi|152060505|sp|A5DIX5|ROK1_PICGU RecName: Full=ATP-dependent RNA helicase ROK1
          Length = 537

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 159/420 (37%), Gaps = 41/420 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-------EAGGQA 324
            PT  Q  AI               I     GSGKTL  LI MA A+         G + 
Sbjct: 128 EPTAIQCEAIPA------SAEGRDLIACAPTGSGKTLAYLIPMAQALISSPKTKNYGIRG 181

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           V++AP   LA Q Y+ +    + + + V +++    Q   + +   I+  +  ++I T  
Sbjct: 182 VVIAPTNELAIQIYQTLAPMCRGSNLNVTLLS---KQVASKISSSIISANKFDVLICTPL 238

Query: 385 LFQDSIQYYKLILVIVDE----------QHRFGVQQRLKLTQKATAPHVLLMTATPIP-- 432
              D ++  ++ L  V+            H F  Q    L+          M +  IP  
Sbjct: 239 RLIDLVKKEQVDLSKVEHLVIDEADKLFDHGFVEQTDEILSHCTLPTRRTSMFSATIPSG 298

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
              +  + + D     +  K      I   ++     +  +  ++ ++ +G+    I   
Sbjct: 299 VEEMANSIMKDQIRIIVGHKEGASTSIDQKLVFTGNEEGKLLAIRQMVQQGEFKPPIIIF 358

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
           ++    +        ++ L      ++ +IH   +   +E  +  FKNG   +LI T V+
Sbjct: 359 LQSIPRAKALFHELIYDKL------NVEVIHAERTPKQREEAIRRFKNGDAWVLITTDVL 412

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D    +++I  +      A +H++ GR GRG +    +  +           L+V+
Sbjct: 413 ARGVDFKGVNLVINYDVPQTSQAYVHRI-GRTGRGGKEGKAVTFFTKEDKLAIKPVLNVM 471

Query: 612 KNTE--DGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILTQ 669
           K +   +G+    E +++  + E   IKQ  + +  I+       ++   RK  K ++  
Sbjct: 472 KQSGCHEGYSEWMESMEKLTKKEKQQIKQHEIKRKKISTVP---QVVSKKRKQRKEMIEA 528


>gi|154252927|ref|YP_001413751.1| DEAD/DEAH box helicase domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154156877|gb|ABS64094.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 448

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 134/346 (38%), Gaps = 37/346 (10%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQA 324
           PT  Q  AI  +L+          +     G+GKT    + +   + A          +A
Sbjct: 27  PTPIQAQAIPALLEGRD------LLGLAQTGTGKTAAFALPILQILAAANEKRQPKEARA 80

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+AP   LA Q  + I+ Y +N ++   +I G + Q  + KA+         I++ T  
Sbjct: 81  LILAPTRELAVQISQSIESYGKNFKLRHTVIFGGVNQFRQVKAMTA----GVDIVVATPG 136

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D      +   +  L+++DE  R      ++  +K       ++ A P  R  +L S
Sbjct: 137 RLLDLMNQKHVNLSRTSLLVLDEADRMLDMGFIRDVRK-------IIAAMPRQRQSLLFS 189

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK--- 496
                  +       R+P++  + P     + I++  + +   +K   +   ++  +   
Sbjct: 190 ATMPSSIQHLADEILREPVRVEVTPEVVTVDKIDQRVLHVDGKRKRELLAKLLDNSELSR 249

Query: 497 ---ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
               +  +    R +   +        IHG  S   ++  +D F+NG  ++L+AT +   
Sbjct: 250 VIVFTRTKHCANRVSEQLDKSGVLSEAIHGNKSQGARQRALDMFRNGKARVLVATDIAAR 309

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           GIDV D + +I     +   + +H++ GR  R  +    +      
Sbjct: 310 GIDVSDITHVINYELPNEPESYVHRI-GRTARAGKSGIALSFCDAS 354


>gi|294668347|ref|ZP_06733450.1| hypothetical protein NEIELOOT_00259 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309665|gb|EFE50908.1| hypothetical protein NEIELOOT_00259 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 399

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/391 (16%), Positives = 136/391 (34%), Gaps = 46/391 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
           +PT  Q +AI   L           +     G+GKT   ++     ++    A       
Sbjct: 29  TPTPIQAAAIPKALAGHD------LLAAAQTGTGKTAAFMLPSLERLKRFATASTSPAMH 82

Query: 325 ----VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               +++ P   LA Q  + ++ Y +N  +   ++ G +    +   L         I++
Sbjct: 83  PVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTADLRAGCE----IVV 138

Query: 381 GTHALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D ++     + K+ +V++DE  R      +   +        +M   P  R  
Sbjct: 139 ATVGRLLDHVKQKNINFSKVEIVVLDEADRMLDMGFIDDIRT-------IMRMLPKQRQT 191

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEK 495
           +L S    +  +   +     P +  +   N  +  +E+  + +   +K   +   I + 
Sbjct: 192 LLFSATFAEPIRKLARDFMNSPEQIEVAAQNTTNANVEQHVIAVDTFQKRRLLERLIVDL 251

Query: 496 KE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
                      +  V++     +    S   IHG  S   +   + +FK G  ++L+AT 
Sbjct: 252 DMNQVIVFCKTKQSVDQVTRDLQRREISAQAIHGDKSQQTRLETLSAFKEGNLRVLVATD 311

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLS 609
           V   G+D+ +   +I           +H++ GR GR       I L    + +       
Sbjct: 312 VAARGLDIAELPFVINYEMPTQPEDYVHRI-GRTGRAGADGVAISL----MDETEQKMFE 366

Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSG 640
            +K      +      + R    ++G ++ G
Sbjct: 367 AIKELTGNNIPHRTHRRFRTA--LVGQRRHG 395


>gi|322706999|gb|EFY98578.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Metarhizium
           anisopliae ARSEF 23]
          Length = 714

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 134/386 (34%), Gaps = 53/386 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----------EA 320
            PT  Q +AI   LQ          I     GSGKT   L+ +   +             
Sbjct: 294 EPTPIQRAAIPIALQ------ARDLIGVAVTGSGKTAAFLLPLLVYISDLPPLTEVNKND 347

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+I+AP   L QQ     KK+ +        I G      +  AL       A II+
Sbjct: 348 GPYALILAPTRELVQQIETEAKKFAEPLGFRCVSIVGGHSLEEQAFALRN----GAEIIV 403

Query: 381 GTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLT----------------Q 416
            T     D I+   L+L           D     G ++ +                   +
Sbjct: 404 ATPGRLVDCIERRLLVLSQCCYIIMDEADRMIDLGFEESVNKILDALPVSNEKPDTDDAE 463

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
            A      L +     +T++ T+     + +I +K   R    T+      +D V +R++
Sbjct: 464 NAQLMKSYLGSRDKYRQTMMYTATMPPLVERIAKKYLRRPATATIGNAGEAVDTVEQRVE 523

Query: 477 VVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            +  E ++   +   + +           N +   +      +    S   +HG  +   
Sbjct: 524 FISGEDRRKKRLQEILSKNDFAPPIIVFVNIKRNCDAVARDIKSMGWSTVTLHGSKTQEQ 583

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E+ + S ++G  ++L+AT +   GIDV D S+++  N      +  H++ GR GR  + 
Sbjct: 584 REAALASVRSGATQVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRI-GRTGRAGKS 642

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTE 615
              I       +   Y    +L  + 
Sbjct: 643 GVAITFLGNEDADVMYDLRQMLSKSS 668


>gi|260913800|ref|ZP_05920275.1| ATP-dependent RNA helicase DeaD [Pasteurella dagmatis ATCC 43325]
 gi|260632113|gb|EEX50289.1| ATP-dependent RNA helicase DeaD [Pasteurella dagmatis ATCC 43325]
          Length = 610

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 129/349 (36%), Gaps = 36/349 (10%)

Query: 267 RNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--- 322
            ++ F  P+  Q++ I  +L           +     GSGKT    + + A ++      
Sbjct: 22  SDLGFETPSPIQQTCIPYLLDG------NDVLGMAQTGSGKTAAFSLPLLAQIDLDKKYP 75

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
           Q ++MAP   LA Q  +  +++ +  +   +  + G      R     R     A +++G
Sbjct: 76  QMLVMAPTRELAIQVADACEQFCKYAKNTRIVTLYGG----QRYDIQLRALKQGAQVVVG 131

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTAT-P 430
           T     D I+   L        +L   DE  R G    ++  + +        L +AT P
Sbjct: 132 TPGRILDHIRRGTLDLSNLRFMVLDEADEMLRMGFIDDVETVMAELPEEHQTALFSATMP 191

Query: 431 IP-RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWIC 489
            P R +    + D    KI         I      ++   +    L+ +  E   A  I 
Sbjct: 192 EPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCWYVHGFRKNDALLRFLEVENFDAAIIF 251

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT 549
            + +                L E      A ++G M+   +E  ++  +NG+  +L+AT 
Sbjct: 252 TRTKTGTLD--------VTELLEKHGFRAAALNGDMTQQLREQTLERLRNGSLDILVATD 303

Query: 550 VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           V   G+DV   S+++  +      + +H++ GR GR       +L   P
Sbjct: 304 VAARGLDVERISLVVNYDIPLDAESYVHRI-GRTGRAGRTGRALLFVEP 351


>gi|262041112|ref|ZP_06014330.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041562|gb|EEW42615.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 519

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 131/370 (35%), Gaps = 38/370 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
            PT  Q+ AI  +LQ          +     G+GKT    + +   +             
Sbjct: 91  EPTPIQQQAIPAVLQGRD------LMASAQTGTGKTAGFTLPLLQRLIQNEPHAKGRRPV 144

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E ++ Y++   I   ++ G +    +   L     G   I++ T
Sbjct: 145 RALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKLR----GGVDILVAT 200

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D     ++   K+ ++++DE  R      +           +L       + L+ 
Sbjct: 201 PGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDI------RRVLAKLPARRQNLLF 254

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I  + EK     P++  +   N   E I +    + + +K   +   I E   
Sbjct: 255 SATFSDEIKGLAEK-LLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNW 313

Query: 498 SN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F       N L E         A IHG  S   +   +  FK+G  ++L+AT + 
Sbjct: 314 QQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIA 373

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ +   ++     +     +H++ GR GR       + L      K       +L
Sbjct: 374 ARGLDIEELPHVVNYELPNVPEDYVHRI-GRTGRAAATGEALSLVCVDEHKLLRDIERLL 432

Query: 612 KNTEDGFLIA 621
           K       IA
Sbjct: 433 KKEIPRIAIA 442


>gi|114768996|ref|ZP_01446622.1| ATP-dependent RNA helicase protein [alpha proteobacterium HTCC2255]
 gi|114549913|gb|EAU52794.1| ATP-dependent RNA helicase protein [alpha proteobacterium HTCC2255]
          Length = 667

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/367 (19%), Positives = 135/367 (36%), Gaps = 46/367 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
           + T  Q    K       +      ++    GSGKT+   IA+A  +             
Sbjct: 16  TLTPVQLEVSK------KEFENSDLLVSAQTGSGKTVGFGIAIAPTILKDAINFDKAVAP 69

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+++AP   LA Q    +       +  +    G M     R++LER     +HI++ T
Sbjct: 70  LALVIAPTRELAMQVKRELTWLYGMAKATIASCVGGMDMRDERRSLER----GSHIVVAT 125

Query: 383 HALFQDSIQY--------YKLILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP 432
               +D IQ           ++L   DE    G ++ L+    +   +   L+ +AT   
Sbjct: 126 PGRLRDHIQRGSINLSQVKAVVLDEADEMLDLGFREDLEFILSEAPESRRTLMFSATVPR 185

Query: 433 RTLVLTSLGDIDISKITE-----KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYW 487
             + L      D  +IT      + A  + I   + P +  + +I  L+    E   A  
Sbjct: 186 AIVNLAKSYQKDAIRITTVSDTKQHADIEYIAMTVSPRDGENAIINALRY--YEAPNALV 243

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C           R++V R  S   +   S+  + G +S  ++   + + ++G  ++ +A
Sbjct: 244 FCNT---------RAMVNRLTSRLSNRGFSVVALSGELSQSERTHALQAMRDGRARVCVA 294

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  +++           LH+  GR GR        ++      K +   
Sbjct: 295 TDVAARGIDLPNLDLVVHAELPQNHETMLHR-SGRTGRAGRQGVSAMIVPSRFRKKAERL 353

Query: 608 LSVLKNT 614
           L + K T
Sbjct: 354 LQLGKVT 360


>gi|332704960|ref|ZP_08425046.1| DNA/RNA helicase, Superfamily II [Lyngbya majuscula 3L]
 gi|332356312|gb|EGJ35766.1| DNA/RNA helicase, Superfamily II [Lyngbya majuscula 3L]
          Length = 469

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 130/344 (37%), Gaps = 24/344 (6%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  I F+ PT  Q  AI ++L           +     G+GKT    + M   ++     
Sbjct: 18  LEKIGFTTPTTIQAQAIPELLNGHDV------LGMSQTGTGKTAAFSLPMLDRIDLDKRT 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            QA+I+ P   LAQQ  + I+ ++++ ++ +  + G      + + L +     A I++G
Sbjct: 72  VQALILTPTRELAQQVNQAIRDFSEDRRLHILTVCGGQSIERQIRMLYK----GAQIVVG 127

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D +    L L  +         + L +        +L  T     +T   ++  
Sbjct: 128 TPGRVIDLLDRGDLKLENLSWVVLDEADEMLSMGFIDDVKKILQQT-PEERQTTCFSATM 186

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN-- 499
              I ++  K   + P+   +         IE+   ++  G         I E ++    
Sbjct: 187 PRPIQELVSKFL-KSPVTVKVQQSKAAPARIEQRVYMVPRGCSKIRALHPILELEDPEAS 245

Query: 500 -----FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 R       +  +    S+   HG +S   +E ++  F+    + ++AT +   G
Sbjct: 246 IIFVRTRKAAAELTNQLQAAGHSVDEYHGDLSQSQRERLLYRFRKNQVRWVVATDIAARG 305

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           +DV   + +I  +      + +H++ GR GR  +  + I L  P
Sbjct: 306 LDVDHLTHVINFDLPDQVESYIHRI-GRTGRAGKTGTAITLIQP 348


>gi|325273395|ref|ZP_08139652.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324101468|gb|EGB99057.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 426

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/364 (20%), Positives = 140/364 (38%), Gaps = 38/364 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--EAGGQA----V 325
            PT  Q +AI   LQ    +      +    GSGKT   ++ +   +    GG+     +
Sbjct: 35  EPTPVQAAAIPLALQGRDLR------VTAQTGSGKTAAFVLPLLNRLVDLKGGRVEIRSL 88

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           I+ P   LAQQ  + ++ ++Q T I   ++TG      +   L ++      ++IGT   
Sbjct: 89  ILLPTRELAQQTLKQVQLFSQFTYIKAGLVTGGEDFKEQAAMLRKV----PDVLIGTPGR 144

Query: 386 FQDSIQYYKLILVIV--------DEQHRFGVQQRLK--LTQKATAPHVLLMTATP---IP 432
             + +    L L  V        D     G  + ++    +       LL +AT      
Sbjct: 145 LLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGGAAL 204

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R ++   L D +   +       +  +  II  +      + ++ +L+       I    
Sbjct: 205 RDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIVQWLLANETFDKAIVFT- 263

Query: 493 EEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIE 552
                 N R++ +R             ++HG     D++  ++ FK G+ K+L+AT V  
Sbjct: 264 ------NTRALADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDVAA 317

Query: 553 VGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEISSCILLYHPPLSKNSYTRLSVL 611
            G+D+    ++I  +    G   +H++ GR GR G E  +  L+ H   +  S     + 
Sbjct: 318 RGLDIDGLDLVINFDMPRSGDEYVHRV-GRTGRAGGEGLAISLITHNDWNLMSSIERYLK 376

Query: 612 KNTE 615
           +  E
Sbjct: 377 QQFE 380


>gi|304314413|ref|YP_003849560.1| ATP-dependent RNA helicase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587872|gb|ADL58247.1| predicted ATP-dependent RNA helicase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 425

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/350 (20%), Positives = 127/350 (36%), Gaps = 36/350 (10%)

Query: 262 AQKILRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA 320
             + L ++ F   T  Q   +   L  M        + +   G+GKT    I +   +E 
Sbjct: 15  INRALDDMGFEGTTPIQALTLPVTLDGMDV------VGEAQTGTGKTAAFTIPLLENLEP 68

Query: 321 G--GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               QA+++ P   L  Q  + I++  +   + V  + G      +   L R      H+
Sbjct: 69  ERVPQALVICPTRELCLQVTDEIRRIGKYLNVRVLAVYGGQGIGGQIAELRR----GVHV 124

Query: 379 IIGTHALFQDSIQYYKLILVIV--------DEQHRFGVQQRLKLTQKATAPHVLLMTATP 430
           I+ T     D I+   + L  +        DE    G    ++                 
Sbjct: 125 IVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPER-------- 176

Query: 431 IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWIC 489
             +T++ ++     + +I E+      I  V    + RIDE   + +    + +   WI 
Sbjct: 177 -RQTMLFSATISKPVLRIAERYMRSPQILRVEKKHSPRIDEFYFKTREE-DKVELLDWIL 234

Query: 490 PQIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
              + +    F +   R   L +  +    S+  IHG +S   +E VM+ F+ G   LLI
Sbjct: 235 TSNDIRMGLIFCNTKRRVQRLRKQLSRMGYSVDEIHGDLSQSKRERVMERFRKGRFNLLI 294

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           AT V   GI V D  +++  +        +H++ GR GR         L 
Sbjct: 295 ATDVAARGIHVPDVEVVVNYDLPFENEYYVHRI-GRTGRAGSSGKSFTLV 343


>gi|153831607|ref|ZP_01984274.1| ATP-dependent rna helicase, dead box family [Vibrio harveyi HY01]
 gi|148872117|gb|EDL70934.1| ATP-dependent rna helicase, dead box family [Vibrio harveyi HY01]
          Length = 443

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 128/372 (34%), Gaps = 27/372 (7%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-------GGQAVI 326
           T  Q+ AI   +           +     GSGKTL  ++ M               +AVI
Sbjct: 25  TDIQQQAIPVAIAGKD------LLASSKTGSGKTLAFVLPMLHKSLKTKSFSAKDPRAVI 78

Query: 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF 386
           +AP   LA+Q Y  ++           +I G      + KAL R        I+ T    
Sbjct: 79  LAPTRELAKQVYGELRSMLGGLTYDAALILGGENFNDQVKALRRY----PKFIVATPGRL 134

Query: 387 QDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDIS 446
            D +++  L L  ++        + L L        +         +TL+ ++  D    
Sbjct: 135 ADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHKAAKHRRRQTLMFSATLDHAEV 194

Query: 447 KITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF------ 500
                     P +  I   N   + I +   +         I  ++ E+ E         
Sbjct: 195 NDIASEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERVLEEAEYRQVIIFTA 254

Query: 501 -RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
            R   ER  +           + G ++   + ++M  F+    K+L+ T V   G+D+  
Sbjct: 255 TRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIAT 314

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFL 619
            + +I  +        +H++ GR GR       + L  P    +S+ R+      +  F 
Sbjct: 315 VTHVINFDMPKHTEEYVHRV-GRTGRAGNKGDAVSLVGPK-DWDSFKRVETYLQQDLNFS 372

Query: 620 IAEEDLKQRKEG 631
           + E DLK + +G
Sbjct: 373 VFE-DLKGKFKG 383


>gi|145481077|ref|XP_001426561.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393636|emb|CAK59163.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/378 (19%), Positives = 137/378 (36%), Gaps = 38/378 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE---AG 321
           +    F  P+  Q+ AI  ++Q          I+Q   G+GKT V  ++  + ++     
Sbjct: 37  IYAFGFNKPSAVQQRAIVPVIQGRDV------IVQSQSGTGKTAVFSLSALSMIDLSIRE 90

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            Q +I++    LA+Q  +          + +    G          L+        I+ G
Sbjct: 91  PQVLILSNTRELAEQSAKVAMALGDFLNVSIHACIGGHSIQDDISKLQH----GVQIVSG 146

Query: 382 THALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPI 431
           T     D IQ  +L        IL   DE    G +Q++    +        ++++AT  
Sbjct: 147 TPGRVFDMIQRKELRVRHLKMLILDEADEMLTKGFKQQVYDIYRYLPPTTQNVVVSATLP 206

Query: 432 PRTLVLTSLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYW 487
              L +T     +  KI  K      + IK   I +++ +   + L  +       +A  
Sbjct: 207 QEILDMTDKFMNNPLKILVKRDELTLEGIKQFFIQVDKEEWKFDTLCDLYDTLTITQAVI 266

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C  I         +  E   +       ++  ++G+MS  +++ +M  F+ G  ++LIA
Sbjct: 267 FCSTI---------NKCEWLANKMREHEFTVVQMNGKMSQKERDKIMAEFRQGNKRVLIA 317

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   G+DV   S++I  +  +     +H++ GR GR       I        +     
Sbjct: 318 TDVWGRGLDVQQVSLVINYDLPNSRELYIHRI-GRSGRFGRKGVAINFVKQEDVRLLRDI 376

Query: 608 LSVLKNTEDGFLIAEEDL 625
                   D   +   DL
Sbjct: 377 EQYYSTQIDEMPMNVTDL 394


>gi|77359468|ref|YP_339043.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874379|emb|CAI85600.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
          Length = 408

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/380 (17%), Positives = 130/380 (34%), Gaps = 40/380 (10%)

Query: 255 INVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAM 314
            +++ K+   I +    +PT  Q+ AI + LQ          +     G+GKT   LI  
Sbjct: 6   FDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRD------ILASAPTGTGKTAAFLIPA 59

Query: 315 AAAVEAGGQ-------AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKA 367
              +    +        ++M P   LA Q +E  +   + T + + ++TG +     ++ 
Sbjct: 60  IQYLLDFPRRDPGFARVLVMTPTRELAYQIHEQCELLAKRTNLKIGVVTGGINYGTHKEI 119

Query: 368 LERIAHGQAHIIIGTHALFQDSIQYYK--------LILVIVDEQHRFGVQQRLKLTQKAT 419
            E+       I+I T     + ++           LI+   D     G ++ +       
Sbjct: 120 FEKNN----DILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEA 175

Query: 420 APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479
                          L   +L    + +  E       +           ++ + + +  
Sbjct: 176 KNRRQCF--------LFSATLEGDSVERFAETTLNDPALLEAESSRKEKAKIHQWVHLAD 227

Query: 480 SEGKKAYWICPQI---EEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESV 533
               K   +   +   +  K   F    ER  +L    T+     A + G M    +   
Sbjct: 228 DYHHKLELLVNTLNGPDVTKAIVFVKTRERLETLIGELTTNDVKAAWLRGEMPQDKRMKA 287

Query: 534 MDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCI 593
           M++F +G  ++L+AT V   GIDV D S +I  +        +H++ GR GR  +    I
Sbjct: 288 MENFHSGKTRILVATDVAARGIDVADISHVINFDLPRTADIYVHRI-GRTGRAGKKGIAI 346

Query: 594 LLYHPPLSKNSYTRLSVLKN 613
            L         Y     ++ 
Sbjct: 347 SLVEAHDIGILYKIERYIEQ 366


>gi|293414669|ref|ZP_06657318.1| ATP-independent RNA helicase DbpA [Escherichia coli B185]
 gi|291434727|gb|EFF07700.1| ATP-independent RNA helicase DbpA [Escherichia coli B185]
          Length = 457

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 131/364 (35%), Gaps = 37/364 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           L  + + + T  Q +A+  IL     +      +Q   GSGKT    + +   ++A    
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQ 71

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q    +++  +      +  + G  P   +R +L+       HII+
Sbjct: 72  TQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIV 127

Query: 381 GTHALFQDSIQ--------YYKLILVIVDEQHRFGVQQ--RLKLTQKATAPHVLLMTATP 430
            T     D +Q           L++   D     G        +     +   LL +AT 
Sbjct: 128 ATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATW 187

Query: 431 IPRTLVLTSLGDIDISKITEKPAGR-KPIKTVIIPINRIDEV-IERLKVVLSEGKKAYWI 488
                 ++     D   I         PI       +   ++ + +  + L +       
Sbjct: 188 PEAIAAISGRVQRDPLAIEIDSTDALPPIDQQFYETSSKGKIPLLQRLLSLHQPSSCVVF 247

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           C       + + ++V +  N + +    S   +HG +   D++  +  F NG+  +L+AT
Sbjct: 248 CNT-----KKDCQAVCDALNEVGQ----SALSLHGDLEQRDRDQTLVRFANGSACVLVAT 298

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+    +++           +H++ GR  R       I    P  ++ +    
Sbjct: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIIS 357

Query: 609 SVLK 612
            +L+
Sbjct: 358 DMLQ 361


>gi|260469782|ref|ZP_05813939.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259028428|gb|EEW29747.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 620

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 85/423 (20%), Positives = 152/423 (35%), Gaps = 59/423 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
             T  Q++ ++          +   ++    GSGKT+   +AMA  +  G          
Sbjct: 22  DLTPVQKAVLEL--------GQADALVSAQTGSGKTVAFGLAMAPTLLDGADRFAPATAP 73

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
            A+ +AP   LA Q    ++   + T   V    G M     R+ALER     AHI++GT
Sbjct: 74  LALAVAPTRELALQVTRELEWLYEMTGATVASCVGGMDMRTERRALER----GAHIVVGT 129

Query: 383 HALFQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLT--QKATAPHVLLMTATPIP 432
               +D I    L        +L   DE    G ++ L+            L+ +AT   
Sbjct: 130 PGRLRDHITRNSLDMSALKAVVLDEADEMLDLGFREDLEFILDAAPAERRTLMFSATVPR 189

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTV-----IIPINRIDEVIERLKVVLSEGKKAYW 487
               L      D  +I+     ++ +        + P +R + +I  L+    E K A  
Sbjct: 190 SIATLAQGYQRDAVRISAAGEEKQHLDIEYRALSVAPADRENAIINVLRF--YEAKNALV 247

Query: 488 ICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            C           R+ V    +   +   S+  + G +S  ++   + + ++G  K+ IA
Sbjct: 248 FCNT---------RAAVNHLTARFNNRNFSVVALSGELSQNERSHALQAMRDGRAKVCIA 298

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T V   GID+ +  ++I  +        LH+  GR GR        L+      + +   
Sbjct: 299 TDVAARGIDLPNLELVIHADLPTNPETLLHR-SGRTGRAGRKGVSALIVPGSARRRTERL 357

Query: 608 LSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHIL 667
           L   K T         D   R++            + ++A P   + + +  R     +L
Sbjct: 358 LQSAKLTATWASPPSADDVMRRD-----------DERILADPAFDEPVKDDERAFIDALL 406

Query: 668 TQD 670
           +Q 
Sbjct: 407 SQH 409


>gi|296134828|ref|YP_003642070.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
 gi|295794950|gb|ADG29740.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
          Length = 533

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 117/341 (34%), Gaps = 30/341 (8%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----------- 321
           PT  Q  AI  +L           +     G+GKT    + M   +  G           
Sbjct: 24  PTPIQLQAIPVVLAGHD------LLAAAQTGTGKTAGFTLPMLQRLSGGEPARNAKGKII 77

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +A+I+ P   LA Q +E +  Y ++ ++    + G +    +  AL R       I++ 
Sbjct: 78  PRALILTPTRELAAQVHENLAAYGRHLKLHSMAMYGGVGMQPQINALARGM----DIVVA 133

Query: 382 THALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLG 441
           T     D      + L  V +        R+           ++       + L+ ++  
Sbjct: 134 TPGRLLDHQSQRNIDLSAV-QMLVLDEADRMLDMGFVHDMRRIVALLPKQRQNLLFSATF 192

Query: 442 DIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNF- 500
             +I ++        P +  +   N   +++E++   +   +K   +   I E+      
Sbjct: 193 SEEIKRLAGDFL-VNPQQVAVARQNATADLVEQIVFPVDRERKRDMLVHLIRERNWPQTL 251

Query: 501 -----RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
                +    R     +         HG  +   +   +  FK+G  ++L+AT +   GI
Sbjct: 252 VFTRTKHGANRLAEQLDKDGIVATGFHGNKTQSARLRALADFKSGKLQVLVATDIAARGI 311

Query: 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           D+    +++     +     +H++ GR GR       I L 
Sbjct: 312 DIDQLPVVVNYELPNIPEDYVHRI-GRTGRAGSNGQAISLV 351


>gi|237798154|ref|ZP_04586615.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021006|gb|EGI01063.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 629

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 128/366 (34%), Gaps = 42/366 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q+ AI  +LQ          ++    G+GKT    + +   +             
Sbjct: 23  QPTPVQQRAIPAVLQGRD------LMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
               + +++ P   LA Q +E  K Y ++ + +   I G +    + +A+ R       +
Sbjct: 77  PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSR----GVDV 132

Query: 379 IIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
           ++       D     S+    + ++++DE  R      +   +K      +L       +
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK------VLARLPAKRQ 186

Query: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
            L+ ++    DI+ +  K     P +  + P N   E IE+    L+   K   +   I 
Sbjct: 187 NLLFSATFSNDITSLAGK-LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLIT 245

Query: 494 EKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
                        +    R     +    +   IHG  S   +   +  FK G  ++++A
Sbjct: 246 VGAWEQVLIFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVA 305

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTR 607
           T +   G+D+     ++     +     +H++ GR GR       I L  P   K   + 
Sbjct: 306 TDIAARGLDIDQLPHVVNFELPNVDEDYVHRI-GRTGRAGRSGEAISLVAPDEEKLLKSI 364

Query: 608 LSVLKN 613
             + K 
Sbjct: 365 ERMTKQ 370


>gi|134301861|ref|YP_001121830.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049638|gb|ABO46709.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 441

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 140/373 (37%), Gaps = 41/373 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA------- 324
            PT  Q  AI  +L+          +     G+GKT    + +   +    +A       
Sbjct: 23  KPTPIQAQAIPIVLKG------NDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQANRIKT 76

Query: 325 VIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384
           +I+ P   LA Q  E I+ Y  NT I   +I G +    +   L +       I+I T  
Sbjct: 77  LILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK----GVEILIATPG 132

Query: 385 LFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
              D     ++++  L   ++DE  R      +   +K    H LL       +TL+ ++
Sbjct: 133 RLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKK---IHNLL---PKKLQTLMFSA 186

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN 499
               +I  +  +     P       +N   + I +    L +  K   +   I+++    
Sbjct: 187 TFSSEIKNLANEFLN-NPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQ 245

Query: 500 ------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                  ++   + +    +   S + IHG  S   +   +  FK+    +L+AT +   
Sbjct: 246 VLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAAR 305

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           GID+     +I  +  +     +H++ GR GR  +    I L     S +    LS +++
Sbjct: 306 GIDIAQLPCVINLDLSNVAEDYVHRI-GRTGRAGQEGLAISLV----SADEVESLSNIEH 360

Query: 614 TEDGFLIAEEDLK 626
              G L+  E+L+
Sbjct: 361 LI-GHLLPREELE 372


>gi|114149265|sp|Q3MSQ8|DDX4_RANLE RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|76253272|emb|CAH56439.1| DEAD box protein [Rana lessonae]
          Length = 724

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 136/371 (36%), Gaps = 42/371 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE------------ 319
             T  Q+ +I  I+           +     GSGKT   L+ + A +             
Sbjct: 308 KLTPIQKHSIPIIVAGRD------LMACAQTGSGKTAAFLLPILAHLMVKGVESSAFQTL 361

Query: 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K++  T +   +I G         +L++I+ G  +I+
Sbjct: 362 KEPEAIIVAPTRELINQIYLDARKFSYGTCVRPVVIYGGT---QMFHSLKQISEG-CNIL 417

Query: 380 IGTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
             T     D I        +   L+L   D     G ++ ++   K++      M +   
Sbjct: 418 CATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLKSSG-----MPSKEE 472

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            +TL+ ++     I  +  +      +  V+  +      +E++ + + E  K   +   
Sbjct: 473 RQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGGACSDVEQMVIEVDEFGKKDKLMEI 532

Query: 492 IEE------KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           ++E            +   +   +           IHG     ++E+ +  F+ G C ++
Sbjct: 533 LQEIGSERTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQKERETALRDFRTGQCPVI 592

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY 605
           +AT+V   G+D+ + S +I  +        +H++ GR GR       I  +         
Sbjct: 593 VATSVAARGLDIENVSYVINFDIPDDIDEYVHRI-GRTGRCGNTGRAISFFDKRGDDEQR 651

Query: 606 TRLSVLKNTED 616
              S++K   D
Sbjct: 652 IARSLVKVLSD 662


>gi|331018940|gb|EGH98996.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 442

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 132/351 (37%), Gaps = 38/351 (10%)

Query: 266 LRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + + +PT  Q  AI  +L           +     G+GKT    + +   +   G  
Sbjct: 16  LEALGYQTPTPVQTQAIPPVLAGRD------LMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 +A+++AP   LA Q +E I++Y +N  +      G +    +   L +      
Sbjct: 70  VAPNSIRALVLAPTRELADQVHESIRQYAENLPLSTYAAYGGVSINPQMMKLRK----GV 125

Query: 377 HIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPI 431
            +++ T     D     +I++ +L  +I+DE  R        L          +    P 
Sbjct: 126 DVLVATPGRLLDLYRQKAIRFSQLQTLILDEADRM-------LDLGFAEELRGIYAVLPK 178

Query: 432 PRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            R  +L S    D  ++        P+   + P N     +++  V + + +KA      
Sbjct: 179 QRQTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHL 238

Query: 492 IEEKKESN------FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545
           +++ +          R  V++     +    +   IHG      ++  +D FK+   K+L
Sbjct: 239 MKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKIL 298

Query: 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLY 596
           +AT V   G+D+ D   ++  +        +H++ GR GR  +    I L 
Sbjct: 299 VATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRI-GRTGRAGQTGEAISLV 348


>gi|330009971|ref|ZP_08306668.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. MS 92-3]
 gi|328534645|gb|EGF61216.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. MS 92-3]
          Length = 509

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 131/370 (35%), Gaps = 38/370 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------G 322
            PT  Q+ AI  +LQ          +     G+GKT    + +   +             
Sbjct: 81  EPTPIQQQAIPAVLQGRD------LMASAQTGTGKTAGFTLPLLQRLIQNEPHAKGRRPV 134

Query: 323 QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT 382
           +A+I+ P   LA Q  E ++ Y++   I   ++ G +    +   L     G   I++ T
Sbjct: 135 RALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKLR----GGVDILVAT 190

Query: 383 HALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
                D     ++   K+ ++++DE  R      +           +L       + L+ 
Sbjct: 191 PGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDI------RRVLAKLPARRQNLLF 244

Query: 438 TSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE 497
           ++    +I  + EK     P++  +   N   E I +    + + +K   +   I E   
Sbjct: 245 SATFSDEIKGLAEK-LLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNW 303

Query: 498 SN---FRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                F       N L E         A IHG  S   +   +  FK+G  ++L+AT + 
Sbjct: 304 QQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIA 363

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ +   ++     +     +H++ GR GR       + L      K       +L
Sbjct: 364 ARGLDIEELPHVVNYELPNVPEDYVHRI-GRTGRAAATGEALSLVCVDEHKLLRDIERLL 422

Query: 612 KNTEDGFLIA 621
           K       IA
Sbjct: 423 KKEIPRIAIA 432


>gi|157123872|ref|XP_001653950.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882852|gb|EAT47077.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 718

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 136/367 (37%), Gaps = 41/367 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--------GGQ 323
            PT  Q       +        M+ I     GSGKTL  ++     +          G  
Sbjct: 123 EPTSIQAVGWSIAM----SGRDMVGI--AKTGSGKTLAYILPALIHISNQPRLLRGDGPI 176

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+++AP   LAQQ  +    + +   I+   I G   +  +   L R       I+I T 
Sbjct: 177 ALVLAPTRELAQQIQQVCNDFGRRMSIMNTCIFGGASKHPQADDLRR----GVEIVIATP 232

Query: 384 ALFQDSIQ-----YYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
               D ++       +   +++DE  R          +K      ++    P  + L+ +
Sbjct: 233 GRLIDFLESGTTNLRRTTYLVLDEADRMLDMGFEPQIRK------IISQIRPDRQVLMWS 286

Query: 439 SLGDIDISKITEKPAGRKPIKTV----IIPINRIDEVIERLKVVLSEGKKAYWICPQIEE 494
           +    +I K+ E+         +    +     I ++IE  +    +  + + +  ++ +
Sbjct: 287 ATWPKEIRKLAEEFLREYIQINIGSLNLAANENIMQIIECCE-EYEKETRLFKLLTELSQ 345

Query: 495 KKE------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
           + +         +  V++  ++ +        IHG  +  D++ V+++F+     +L+AT
Sbjct: 346 QGDSKSIIFVETKRKVDQITNVIKRNGWRCDGIHGDKTQKDRDYVLNTFRRLRSGILVAT 405

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+DV D   +I  +  +     +H++ GR GR     +    + P     +   +
Sbjct: 406 DVASRGLDVDDVKYVINFDFPNNTEDYIHRI-GRTGRSTNKGTSYTFFTPANGAKAGDLI 464

Query: 609 SVLKNTE 615
            VL+   
Sbjct: 465 GVLREAN 471


>gi|115452607|ref|NP_001049904.1| Os03g0308500 [Oryza sativa Japonica Group]
 gi|122247124|sp|Q10MH8|RH24_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 24
 gi|108707754|gb|ABF95549.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113548375|dbj|BAF11818.1| Os03g0308500 [Oryza sativa Japonica Group]
 gi|215737377|dbj|BAG96306.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 770

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 159/447 (35%), Gaps = 49/447 (10%)

Query: 213 RKAKDFEWTSPARERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNI--- 269
              KDF    P+   ++  E+     +L +    F     I    +     +++  I   
Sbjct: 178 PFNKDFYEEKPSVSGMSEQEVADYMKSLAIRVSGFDVPRPIKSFADCGFPVQLMNAIAKQ 237

Query: 270 PFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EA 320
            +  PT  Q  A+  +L           I     GSGKT   ++ M   +        E 
Sbjct: 238 GYEKPTTIQCQALPIVLSGRD------IIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEE 291

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G   V+ AP   LA Q Y   KK+ +   + V  + G + +  + K L+        I+I
Sbjct: 292 GPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCE----IVI 347

Query: 381 GTHALFQDSIQYYKLILV-----IVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTL 435
            T     D ++   L +      ++DE  R          +             P  +TL
Sbjct: 348 ATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIR------PDRQTL 401

Query: 436 VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICP---- 490
           + ++     + ++  +     PI+  +  +   +E I+++  VL    +K  W+      
Sbjct: 402 LFSATMPYKVERLA-REILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLPG 460

Query: 491 QIEEKKESNFRSVVERFNSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
            I++     F +   R + +          IA +HG      +   +  FK+G   +L+A
Sbjct: 461 MIDDGDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVA 520

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEIS--SCILLYHPPLSKNSY 605
           T V   G+D+     ++  +        +H++ GR GR  +    +  L+    +     
Sbjct: 521 TDVAARGLDIKSIKTVVNFDIAKEMDMHIHRI-GRTGRAGDKDGTAYTLITQKEVRFAGE 579

Query: 606 TRLSVLKNTED----GFLIAEEDLKQR 628
               ++   +D       +A +D + R
Sbjct: 580 LVHCLIAAGQDVPNELMDLAMKDGRFR 606


>gi|320093766|ref|ZP_08025614.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979303|gb|EFW10798.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 800

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/354 (20%), Positives = 137/354 (38%), Gaps = 48/354 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
           +PT  Q  AI  +L      +    +     G+GKT    + + A V+A     QA+++A
Sbjct: 72  TPTPIQAEAIPPLL------DLRDVVGIAQTGTGKTAAFGLPLLAIVDADEKAVQALVLA 125

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q    I+ +   T  +V + + G  P   +  AL+R     A +++GT     
Sbjct: 126 PTRELAMQSAAAIEDFAARTAELVVVPVYGGSPYGPQIGALKR----GAQVVVGTPGRVI 181

Query: 388 DSIQY--------YKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTS 439
           D I+           L+L   DE  R G  + ++    +     L         T + ++
Sbjct: 182 DLIEKGALDLSGVRMLVLDEADEMLRMGFAEDVETIASSAPDDRL---------TALFSA 232

Query: 440 LGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKES- 498
                I K+  +   + P+K  +   +   + I +   V+    K   +   +  + +  
Sbjct: 233 TMPPAIEKVA-REHLKDPVKVAVSEESSTVDTIHQTYAVVPYKHKIGALSRVLATRAQHI 291

Query: 499 --------------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
                           R  VE  +          A I G ++  ++E +++  K+G+  +
Sbjct: 292 AAGQEDADAAIVFVRTRVDVEEVSLELSGRGFRAAGISGDVAQTERERMVERLKSGSLDV 351

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598
           L+AT V   G+DV   S+++  +      A +H++ GR GR       +  + P
Sbjct: 352 LVATDVAARGLDVERISLVVNFDVPREPEAYVHRI-GRTGRAGRQGRSLTFFTP 404


>gi|270610556|gb|ACZ92304.1| vasa-like protein [Scylla paramamosain]
          Length = 632

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/385 (19%), Positives = 143/385 (37%), Gaps = 56/385 (14%)

Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG----------- 321
           PT  Q+ +I  +   M+Q++ M        GSGKT   L+ M   +              
Sbjct: 217 PTPIQKYSIPIL---MNQRDLM---ACAQTGSGKTAAFLLPMLHYILENDIESHSFEDVA 270

Query: 322 -GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
               +++AP   LA Q ++  +K++  T I    I G +    +   L R+     HIII
Sbjct: 271 QPVGLVLAPTRELAIQIFQEARKFSLQTVIKNSCIYGGVATNFQ---LRRMKEQGCHIII 327

Query: 381 GTHALF-----QDSIQYYKLILVIVDEQHRF----GVQQRLKLTQKATAP----HVLLMT 427
            T            I    L  ++ DE  R      +    KL      P     + +M 
Sbjct: 328 ATPGKLLFFLGMGKISLKSLKFLVFDEADRMLDLGFIDDMEKLVAHPDMPPKGERLTMMF 387

Query: 428 ATPIPRTLVLTSLGDID---ISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKK 484
           +   P  +   +L  +D        +  A  K +   I+ + + ++  +  + + S    
Sbjct: 388 SATFPEEVQRCALRFLDNYLFLVAGQVGAANKDVCQTIVQVAKFEKRDKLAEYLRSFEDS 447

Query: 485 AYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544
              +   +E K++++F         L  + + S+ +  GR     +E  + +F++   ++
Sbjct: 448 QEKVLVFVEMKRQADFVGTY-----LSTNGSRSVTLHGGRY-QEQREEALSAFRSNQYRV 501

Query: 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP----- 599
           L+AT+V   G+D+     +I  +        +H++ GR GR       +  Y P      
Sbjct: 502 LVATSVAARGLDIRGVGYVINYDLPKSADEYVHRI-GRTGRVGNRGQAVSFYDPEQDLNL 560

Query: 600 -------LSKNSYTRLSVLKNTEDG 617
                  L+       S L++  DG
Sbjct: 561 AKDLVRILTDAEQEVPSWLRSAADG 585


>gi|11121196|emb|CAC14786.1| DEAD box protein [Homo sapiens]
          Length = 455

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 130/356 (36%), Gaps = 21/356 (5%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMA 328
            PTK Q  AI   LQ          I   + GSGKT    + +  A+    Q   A+++ 
Sbjct: 46  KPTKIQIEAIPLALQGRD------IIGLAETGSGKTGAFALPILNALLETPQRLFALVLT 99

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  E  +    +  +   +I G +    +  AL +    + HIII T     D
Sbjct: 100 PTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK----KPHIIIATPGRLID 155

Query: 389 SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKI 448
            ++  K   +   +        R+      T    +L       +T + ++     + K+
Sbjct: 156 HLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKL 215

Query: 449 TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEE------KKESNFRS 502
            ++ A + P+K  +    +  E +++  + +    K  ++   + E          +  +
Sbjct: 216 -QRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCN 274

Query: 503 VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASI 562
             +R   L  +   +   +HG+MS   +   ++ FK     +L+AT V   G+D+    +
Sbjct: 275 NTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKESSILLATDVASRGLDIPHVDV 334

Query: 563 IIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGF 618
           ++  +        +H++ GR  R       I        +       ++     GF
Sbjct: 335 VVNFDIPTHSKDYIHRV-GRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGF 389


>gi|37676305|ref|NP_936701.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus YJ016]
 gi|37200846|dbj|BAC96671.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 459

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 148/423 (34%), Gaps = 60/423 (14%)

Query: 266 LRNIPFSP-TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L ++ ++  T  Q  ++  +L           I QG  GSGKT    + + + +      
Sbjct: 18  LDSLGYTEMTPIQAQSLPLVLDGKDV------IGQGKTGSGKTATFALGLLSNLNVSRFR 71

Query: 323 -QAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            Q++++ P   LA Q    I+   +    I V  + G MP   +  +LE      AHI++
Sbjct: 72  VQSLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEH----GAHILV 127

Query: 381 GTHALFQDSI--------QYYKLILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATP 430
           GT     D +        +   L+L   D     G Q  +        T    LL +AT 
Sbjct: 128 GTPGRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDAAPTQRQTLLFSATF 187

Query: 431 IPR--TLVLTSLGDIDISKI--TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
             +  T+    + + ++ K+  T + +  +     +      D  +E   ++    +   
Sbjct: 188 PEQIETIASKVMQNPEMVKVESTHQKSTIEQRFYQLESTEERDNALEA-LLLTHRPESTV 246

Query: 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLI 546
             C   +E +         RF         S+  +HG M   ++E  +  F N +  +L+
Sbjct: 247 VFCNTKKEVQNVTDELNHRRF---------SVIELHGDMEQRERERALTMFANKSISILV 297

Query: 547 ATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYT 606
           AT V   G+DV +   +I           +H++ GR GR       I  +          
Sbjct: 298 ATDVAARGLDVDNLDAVINFELSRDPEVHVHRI-GRTGRAGAKGIAISFFSEKELYRVER 356

Query: 607 RLSVLK-----------NTEDGFLIAEEDLKQRK-------EGEILG--IKQSGMPKFLI 646
               +                 +  +   ++           G+ILG   K++G+   LI
Sbjct: 357 IEEYMGIDVHPAKLPQPENPKPYYPSMRTIQILGGKKQKVRAGDILGSLTKEAGIDGKLI 416

Query: 647 AQP 649
            + 
Sbjct: 417 GKI 419


>gi|315051548|ref|XP_003175148.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Arthroderma
           gypseum CBS 118893]
 gi|311340463|gb|EFQ99665.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Arthroderma
           gypseum CBS 118893]
          Length = 813

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 134/388 (34%), Gaps = 55/388 (14%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            P+  Q  +I   LQ+         I     GSGKT   L+ +   +             
Sbjct: 392 DPSPIQRVSIPIALQNRD------LIGVAVTGSGKTAAFLLPLLVYISSLPRLDEFEWRR 445

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G  A+I+AP   LAQQ      K+       V  I G      +   L       A I
Sbjct: 446 NDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEEQAYNLRN----GAEI 501

Query: 379 IIGTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLT--------------- 415
           II T     D I+   L+L           D     G ++ +                  
Sbjct: 502 IIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDTEE 561

Query: 416 -QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
            + A A    +       +T++ T+     + +I  K   R  I T+      +D V +R
Sbjct: 562 AENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAVDTVEQR 621

Query: 475 LKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHGRMSD 527
           ++ V  E K+   +   +  +          N +   +      +H   S   +HG  + 
Sbjct: 622 VEFVAGEDKRKKRLAEILTSRDYRPPIIVFVNIKRNCDAVARDIKHMGFSAVTLHGSKTQ 681

Query: 528 IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE 587
             +E+ + S +NG+  +L+AT +   GIDV D S+++  N      +  H++ GR GR  
Sbjct: 682 EQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRI-GRTGRAG 740

Query: 588 EISSCILLYHPPLSKNSYTRLSVLKNTE 615
           +    I       +   Y    +L  + 
Sbjct: 741 KSGVAITFLGSEDNDVLYDLKQMLMKSS 768


>gi|197334079|ref|YP_002154825.1| ATP-dependent RNA helicase RhlB [Vibrio fischeri MJ11]
 gi|226739236|sp|B5FF87|RHLB_VIBFM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|197315569|gb|ACH65016.1| ATP-dependent RNA helicase RhlB [Vibrio fischeri MJ11]
          Length = 432

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/382 (17%), Positives = 135/382 (35%), Gaps = 42/382 (10%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P  ++G  A+  ++      T  Q  A+  +L             Q   G+GKTL  L A
Sbjct: 18  PQVIDGLNAKGFIKC-----TPIQAKALPVLLAGQD------IAGQAQTGTGKTLAFLTA 66

Query: 314 MAAAVEA----------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
               +              +A+IMAP   LA Q +   +    +T +   +  G      
Sbjct: 67  TFNHLLTTPAPEGRKITQPRAIIMAPTRELAIQIFNDAESLIASTGLKAALAYGGERYEK 126

Query: 364 RRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +++ +E+       I+IGT     D      I +  +  V++DE  R      +K  +  
Sbjct: 127 QQQVIEQ----GVDILIGTTGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDIRFI 182

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                  M A      ++ ++     + ++  +   ++P   V+ P  +    I+     
Sbjct: 183 ----FRRMPAPTERLNMLFSATLSYRVQELAFEHM-QEPEHVVVEPEQKTGHRIKEELFY 237

Query: 479 LSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
            S   K   +   IEE+         N +   E            + ++ G +    +E 
Sbjct: 238 PSNDHKMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRER 297

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +++ F  G   +L+AT V   G+ +   + +   +  +     +H++ GR GR     + 
Sbjct: 298 ILEEFTQGNVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRI-GRTGRAGASGNS 356

Query: 593 ILLYHPPLSKNSYTRLSVLKNT 614
           I       + N       ++++
Sbjct: 357 ISFACEEYAINLPAIEEYIEHS 378


>gi|147770303|emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
          Length = 666

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 131/358 (36%), Gaps = 40/358 (11%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---------GGQAV 325
             Q + ++  +Q          I +   G+GKTL   I +   V              A+
Sbjct: 140 PIQRAVLEPAMQGRD------MIGRARTGTGKTLAFGIPIMDKVIQYNAKHGRGRNPLAL 193

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA+Q  +   +      +    + G  P + +  +L+        +++GT   
Sbjct: 194 VLAPTRELARQVEKEFXESA--PNLDTLCVYGGTPISRQMNSLDY----GVDVVVGTPGR 247

Query: 386 FQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSL 440
             D I+   L L  V     DE  +       +  +      ++L       ++++ ++ 
Sbjct: 248 IIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVE------MILEKLPQNRQSMMFSAT 301

Query: 441 GDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEEK---- 495
               I K+T+K         ++   + ++ E I    +     +KA  + P I E     
Sbjct: 302 MPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITEHAKGG 361

Query: 496 KESNFRSVVERFNSLHEHF--TSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
           K   F       + L            +HG +S   +E  +  F++G   +L+AT V   
Sbjct: 362 KCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAAR 421

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
           G+D+ +  +II     +     +H+  GR GR  +  + IL+Y    ++        +
Sbjct: 422 GLDIPNVDLIIHYELPNSSEIFVHR-SGRTGRAGKKGTAILIYAEQQARTVRFIERDI 478


>gi|15221761|ref|NP_175829.1| EIF4A-2; ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|1170505|sp|P41377|IF4A2_ARATH RecName: Full=Eukaryotic initiation factor 4A-2; Short=eIF-4A-2;
           AltName: Full=ATP-dependent RNA helicase eIF4A-2;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 19
 gi|4585969|gb|AAD25605.1|AC005287_7 Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|14423372|gb|AAK62368.1|AF386923_1 Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|16226681|gb|AAL16231.1|AF428462_1 At1g54270/F20D21_52 [Arabidopsis thaliana]
 gi|16556|emb|CAA46189.1| eukaryotic translation initiation factor 4A-2 [Arabidopsis
           thaliana]
 gi|21593545|gb|AAM65512.1| eukaryotic translation initiation factor 4A, putative [Arabidopsis
           thaliana]
 gi|30725682|gb|AAP37863.1| At1g54270 [Arabidopsis thaliana]
 gi|110740791|dbj|BAE98493.1| Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|332194952|gb|AEE33073.1| translation initiation factor 4A-2 [Arabidopsis thaliana]
          Length = 412

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/341 (19%), Positives = 125/341 (36%), Gaps = 33/341 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 61  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLA 114

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 115 PTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVFD 170

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 171 MLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 230

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + + + D  +E L          Y      +   
Sbjct: 231 RKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETL-------CDLYETLAITQSVI 283

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 284 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 343

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYH 597
           V   S++I  +        LH++ GR GR       I    
Sbjct: 344 VQQVSLVINFDLPTQPENYLHRI-GRSGRFGRKGVAINFVT 383


>gi|329295922|ref|ZP_08253258.1| ATP-dependent RNA helicase DeaD [Plautia stali symbiont]
          Length = 617

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/405 (18%), Positives = 144/405 (35%), Gaps = 44/405 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q   I  +L           +     GSGKT    + +   V+      Q +++A
Sbjct: 28  KPSPIQAECIPHLLAGRDV------LGMAQTGSGKTAAFSLPLLNNVDPSVRAPQILVLA 81

Query: 329 PIGILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           P   LA Q  E + +++++   I V  + G      R     R       I++GT     
Sbjct: 82  PTRELAVQVAEAMTEFSKHMRGINVVALYGG----QRYDVQLRALRQGPQIVVGTPGRLL 137

Query: 388 DSIQY--------YKLILVIVDEQHRFGV-QQRLKLTQKATAPHVLLMTATPIPRTLVLT 438
           D ++           L+L   DE  R G  +    +  +    H          +T + +
Sbjct: 138 DHLKRGTLDLSSLRGLVLDEADEMLRMGFIEDVETIMAQIPEGH----------QTALFS 187

Query: 439 SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE- 497
           +     I +IT++         +   I    ++ +           A     + E+    
Sbjct: 188 ATMPEAIRRITKRFMKDPQEVRMQSSITTRPDISQSYWTAYGRKSDALVRFLEAEDFDAA 247

Query: 498 ----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553
                   + +E   +L  +  +S A+ +G M+   +E  ++  K+G   +LIAT V   
Sbjct: 248 IIFVRTKNATLEVAETLERNGYNSAAL-NGDMNQALREQTLERLKDGRLDILIATDVAAR 306

Query: 554 GIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKN 613
           G+DV   S+++  +      + +H++ GR GR       +L       +        +K 
Sbjct: 307 GLDVERISLVVNYDIPMDAESYVHRI-GRTGRAGRAGRALLFVENRERRLLRNIERTMKL 365

Query: 614 TEDGFLIA-EEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLE 657
           T     +   E L QR+  ++    Q    +   +  + + +LL 
Sbjct: 366 TIPEVELPNAELLSQRRLAQLAAKVQ---QQLESSDLDQYRALLA 407


>gi|115397801|ref|XP_001214492.1| hypothetical protein ATEG_05314 [Aspergillus terreus NIH2624]
 gi|121738078|sp|Q0CLX0|PRP28_ASPTN RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|114192683|gb|EAU34383.1| hypothetical protein ATEG_05314 [Aspergillus terreus NIH2624]
          Length = 783

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/391 (20%), Positives = 137/391 (35%), Gaps = 59/391 (15%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV------------- 318
            PT  Q +AI   +Q          I     GSGKT   L+ +   +             
Sbjct: 365 DPTPIQRAAIPIAMQSRD------LIGVAVTGSGKTAAFLLPLLVYIAELPRIDEFEWRK 418

Query: 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHI 378
             G  A+++AP   LAQQ     KK+T      V  I G      +  +L       A I
Sbjct: 419 NDGPYAIVLAPTRELAQQIEIEAKKFTIPLGFTVVSIVGGHSLEEQAYSLRN----GAEI 474

Query: 379 IIGTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLT--------------- 415
           II T     D I+   L+L           D     G ++ +                  
Sbjct: 475 IIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSDA 534

Query: 416 -----QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDE 470
                  +   H      T   +T++ T+     + +I  K   R  I T+      +D 
Sbjct: 535 AENAAAMSQLHHAGGGRDTRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDT 594

Query: 471 VIERLKVVLSEGKKAYWICPQIEEKKES-------NFRSVVERFNSLHEHFTSSIAIIHG 523
           V +R++++  E K+   +   +   +         N +   +      + +  S   +HG
Sbjct: 595 VEQRVELIAGEDKRKKRLGDILSSGEFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHG 654

Query: 524 RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRV 583
             +   +E+ + S +NG+  +L+AT +   GIDV D S+++  N      +  H++ GR 
Sbjct: 655 SKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRI-GRT 713

Query: 584 GRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           GR  +    I       +   Y    +L  +
Sbjct: 714 GRAGKSGVAITFLGNEDADVMYDLKQMLIKS 744


>gi|330830109|ref|YP_004393061.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
 gi|328805245|gb|AEB50444.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
           B565]
          Length = 431

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/372 (16%), Positives = 121/372 (32%), Gaps = 32/372 (8%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------Q 323
             T  Q+ AI  I +          +     G+GKT    + +   +            +
Sbjct: 23  EMTPVQQQAIPAIRRGRDV------LASAQTGTGKTAAFALPILQRLVDNPAPVQPSNAR 76

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
            +I+ P   LA Q    I  + +   I    I G   Q  + K L+      AHII+ T 
Sbjct: 77  VLILTPTRELAAQVASNINDFAKYLDITTITIVGGGKQDVQAKKLKA----GAHIIVATP 132

Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
               + +    L L  V E        R+     +     +L       + L+ ++    
Sbjct: 133 GRLLEHLTACNLSLSGV-ECLVMDEADRILDMGFSADVQKILQAVNKTRQNLLFSATFSD 191

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESN---- 499
            + K+       +P    +   N   + +      + + +K   +   I ++        
Sbjct: 192 AVKKLANL-MLDRPQIVSVNKQNSTADTVSHTVYPVEQKRKRELLSELIGKQNWQQVLVF 250

Query: 500 --FRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
              R   +             A++HG  +  ++   +  F  G  ++L+AT V   G+D+
Sbjct: 251 ASTRESCDVLVEELNLDGIKSAVVHGEKAQGNRRRALREFMEGKVRVLVATEVAARGLDI 310

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-----LSKNSYTRLSVLK 612
            D   ++  +        +H++ GR GR  +    I           L   +     + +
Sbjct: 311 PDLEYVVNYDLPFLAEDYVHRI-GRTGRAGKRGMAISFVSREEERTLLEIEALIGQKIRR 369

Query: 613 NTEDGFLIAEED 624
               G+ ++  D
Sbjct: 370 IMVPGYEVSSRD 381


>gi|120537661|gb|AAI29276.1| Vasa protein [Danio rerio]
          Length = 688

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 124/364 (34%), Gaps = 37/364 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +       G         
Sbjct: 271 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQRFMTDGVAASKFSEI 324

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K+   T +   ++ G +   +    +  +  G  +++
Sbjct: 325 QEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY---TIREVLKG-CNVL 380

Query: 380 IGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
             T     D I   K+ L  V     DE  R          +         M +    +T
Sbjct: 381 CATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEP--EMRKLVASPGMPSKEERQT 438

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE- 493
           L+ ++    DI ++         I   +  +      +E+  V + +  K   +   +  
Sbjct: 439 LMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYSKRDQLLELLRA 498

Query: 494 -----EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +       S   IHG     ++E  +  F+ G C +L+AT
Sbjct: 499 TGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGQCPVLVAT 558

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTR 607
           +V   G+D+     ++  +        +H++ GR GR       +  ++P   +  + + 
Sbjct: 559 SVAARGLDIEQVQHVVNFDMPSSIDEYVHRI-GRTGRCGNTGRAVSFFNPESDTPLARSL 617

Query: 608 LSVL 611
           + VL
Sbjct: 618 VKVL 621


>gi|19482136|gb|AAL89410.1|AF461759_1 vasa-like protein [Danio rerio]
          Length = 715

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 124/364 (34%), Gaps = 37/364 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
            PT  Q+  I  I            +     GSGKT   L+ +       G         
Sbjct: 298 KPTPVQKHGIPIISAGRD------LMACAQTGSGKTAAFLLPILQRFMTDGVAASKFSEI 351

Query: 323 ---QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHII 379
              +A+I+AP   L  Q Y   +K+   T +   ++ G +   +    +  +  G  +++
Sbjct: 352 QEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGY---TIREVLKG-CNVL 407

Query: 380 IGTHALFQDSIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRT 434
             T     D I   K+ L  V     DE  R          +         M +    +T
Sbjct: 408 CATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEP--EMRKLVASPGMPSKEERQT 465

Query: 435 LVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE- 493
           L+ ++    DI ++         I   +  +      +E+  V + +  K   +   +  
Sbjct: 466 LMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYSKRDQLLELLRA 525

Query: 494 -----EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
                       +   +   +       S   IHG     ++E  +  F+ G C +L+AT
Sbjct: 526 TGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGQCPVLVAT 585

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP-LSKNSYTR 607
           +V   G+D+     ++  +        +H++ GR GR       +  ++P   +  + + 
Sbjct: 586 SVAARGLDIEQVQHVVNFDMPSSIDEYVHRI-GRTGRCGNTGRAVSFFNPESDTPLARSL 644

Query: 608 LSVL 611
           + VL
Sbjct: 645 VKVL 648


>gi|332641920|gb|AEE75441.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 407

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 33/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+  I    + +        I Q   G+GKT      +   ++      QA+++A
Sbjct: 56  KPSAIQQRGIVPFCKGLDV------IQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLA 109

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LAQQ  + ++       + V    G       ++ L+       H+++GT     D
Sbjct: 110 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVFD 165

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKLTQK--ATAPHVLLMTATPIPRTLVLT 438
            ++   L        +L   DE    G + ++    +       V + +AT  P  L +T
Sbjct: 166 MLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 225

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKK 496
                   +I  K      + IK   + + + +  +E L          Y      +   
Sbjct: 226 RKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETL-------CDLYETLAITQSVI 278

Query: 497 ESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGID 556
             N R  V+           +++  HG M    ++ +M  F++G+ ++LI T ++  GID
Sbjct: 279 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 338

Query: 557 VVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
           V   S++I  +        LH++ GR GR       I      
Sbjct: 339 VQQVSLVINFDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRD 380


>gi|329120622|ref|ZP_08249285.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327460846|gb|EGF07180.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 455

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 123/347 (35%), Gaps = 42/347 (12%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--------- 322
           +PT  Q +AI  +L           +     G+GKT   ++     ++            
Sbjct: 24  TPTPIQAAAIPKVLAGHD------LLAAAQTGTGKTAAFMLPALERLKRYANTSASPAMH 77

Query: 323 --QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
             + +++ P   LA Q  + ++ Y +N  +   ++ G +    +   L         I++
Sbjct: 78  PVRMLVLTPTRELADQIDKNVQAYIKNLPLRHTVLFGGVNMDKQTADLRVGCE----IVV 133

Query: 381 GTHALFQDSIQYYK--------LILVIVDEQHRFGV--QQRLKLTQKATAPHVLLMTAT- 429
            T     D ++           ++L   D     G     R  +         LL +AT 
Sbjct: 134 ATVGRLLDHVKQKNINFAKIETVVLDEADRMLDMGFIDDIRAIMGMLPRERQTLLFSATF 193

Query: 430 -PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWI 488
               R L    +   +  ++  +      ++  +I ++  ++     ++++    K   +
Sbjct: 194 ADPIRKLAQDFMNAPETVEVAAQNTANANVEQHVIAVDTFEKRRLLERLIVDLDIKQVIV 253

Query: 489 CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548
             + ++  +   R +  R          +   IHG  S   +   +++FK G  ++L+AT
Sbjct: 254 FCKTKQSVDQVTRDLQRR--------GLAAQSIHGDKSQQTRLETLNAFKEGGLRVLVAT 305

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL 595
            V   G+D+ +   +I           +H++ GR GR       I L
Sbjct: 306 DVAARGLDIAELPFVINYEMPAQPEDYVHRI-GRTGRAGADGVAISL 351


>gi|325916975|ref|ZP_08179217.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536826|gb|EGD08580.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 458

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 84/460 (18%), Positives = 165/460 (35%), Gaps = 63/460 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--- 321
           +  + ++  T  Q  ++  ILQ +        I Q   GSGKT    + +   ++     
Sbjct: 17  IDALGYTVLTPIQAQSLPPILQGLDV------IAQAPTGSGKTAAFGLGLLQKLDPALTR 70

Query: 322 GQAVIMAPIGILAQQHYEFIKKYT-QNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
            QA+++ P   LA Q  + ++K       + + ++TG MP   +  +LE        +++
Sbjct: 71  AQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEA---HDPQVVV 127

Query: 381 GTHALFQDSIQYY--------KLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIP 432
           GT    Q+  +           L+L   D     G ++ ++        H          
Sbjct: 128 GTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKH---------- 177

Query: 433 RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQI 492
           R  +L S    DI +   +   + P++  +   +   E+ ++   V    ++       +
Sbjct: 178 RQSLLFSATFPDIIRTLAREILKDPVEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLL 237

Query: 493 EEKKE-----SNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547
               E      N R  V+      + F  S   +HG M   D++ V+  F N +C +L+A
Sbjct: 238 RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVA 297

Query: 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSY-- 605
           + V   G+DV D S ++            H++ GR  R  +    + L  P  +  +   
Sbjct: 298 SDVAARGLDVEDLSAVVNYELPTDTETYRHRI-GRTARAGKHGLALSLVAPREAARAQAL 356

Query: 606 --------TRLSVLKNTEDGFLI---AEEDLKQ-------RKEGEILG--IKQSGMPKFL 645
                           T     +   A   L+         + G+ILG    ++G+    
Sbjct: 357 EAEQGQPLKWSRAPLATARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAA 416

Query: 646 IAQPELH--DSLLEIARKDAKHILTQDPDLTSVRGQSIRI 683
           I +  ++   S + I R      L        ++G+  R+
Sbjct: 417 IGKIAIYPTRSYVAITRAQVAKALAHL-HAGKIKGRRFRV 455


>gi|320580417|gb|EFW94640.1| Putative ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 499

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 138/362 (38%), Gaps = 39/362 (10%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIM 327
            PT  Q      +L+       M+ +   + GSGKT+   +     +        Q +I+
Sbjct: 112 KPTPIQAVVWPYLLKG----RDMVGV--AETGSGKTMAFGVPAVEHLLKSDSKALQVLII 165

Query: 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQ 387
           +P   LA Q Y+ + + T    +    + G + +  +R+A++R        +I T     
Sbjct: 166 SPTRELASQIYDNLNELTAKVGLECVCVYGGVSKDDQRRAVKRS-----QCVIATPGRLI 220

Query: 388 DSIQYYK--------LILVIVDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIP--RTL 435
           D I+           L+L   D     G ++ +K  +         L+ TAT     R L
Sbjct: 221 DLIEDGSISLDKINYLVLDEADRMLEKGFEEDIKKVMKLTNGNRQTLMFTATWPKEVREL 280

Query: 436 VLTSLGDIDISKITEKPA-----GRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICP 490
            +  +       I ++         + I  V+ P  +  ++++ L+   S  KK   +  
Sbjct: 281 AMNFMDKPVKVTIGQRDELSANKRIQQIVEVVDPREKEQKLLQLLRKYQSGSKKDDKLLI 340

Query: 491 QIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550
               KKE+       R      +   S+A +HG ++   +   +  FK G   +L+AT V
Sbjct: 341 FALYKKEA------ARVEKTLTYKGFSVAALHGDLNQAQRTQALQDFKAGKHNILLATDV 394

Query: 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSV 610
              G+D+ +  ++I           +H++ GR GR  +      L+       +   ++V
Sbjct: 395 AARGLDIPNVKVVINLTFPLTVEDYVHRI-GRTGRAGQTGISHTLFTEHEKHLAGALMNV 453

Query: 611 LK 612
           L+
Sbjct: 454 LR 455


>gi|256419120|ref|YP_003119773.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256034028|gb|ACU57572.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 414

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/359 (22%), Positives = 129/359 (35%), Gaps = 48/359 (13%)

Query: 266 LRNIPFS-PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG-- 322
           L  + F  PT  Q  AI  IL+          +     G+GKT    I +   ++     
Sbjct: 16  LEELGFKRPTDIQFKAIPSILKG------DDVLAIAQTGTGKTAAFAIPVLHKLQQYHPR 69

Query: 323 ------QAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQA 376
                 + V+M P   LA Q  E  ++  + T++ +  + G + QA + K L +      
Sbjct: 70  KTKGEVRCVVMVPTRELAVQISEVFERLAKYTKLNILGLHGGVDQAPQLKKLAQ----GV 125

Query: 377 HIIIGTHALFQDSI--------QYYKLILVIVDEQHRFGV--QQRLKLTQKATAPHVLLM 426
            ++I T     D I        Q   LIL   D     G     R  L         L  
Sbjct: 126 DVLIATPGRMFDLISQGFIDLSQTGILILDEADHMLDLGFIRDIRDVLKHLPRRHQTLFF 185

Query: 427 TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAY 486
           +AT            D DI  +        PI+  I P + + + ++     +    K +
Sbjct: 186 SAT-----------IDEDIKDLAYSVVN-NPIRIQISPQDPVSKNVQHAVAYVGMDDKRF 233

Query: 487 WICPQIEEKKESNF------RSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNG 540
           ++   ++E  E+        +   ER  +  E        +HG     ++  VMD FK G
Sbjct: 234 FLERLVKEFPENKILVFVRTKVRAERVAAAMERVGIKSLTMHGGKEQDNRLQVMDEFKKG 293

Query: 541 TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
             KLLI T V   GID+ D   ++  +        +H++ GR GRG +    +      
Sbjct: 294 DIKLLITTDVNARGIDIPDVEYVVNYDLPDVPENYVHRV-GRTGRGVKKGQAVSFCSDE 351


>gi|229505875|ref|ZP_04395384.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229356226|gb|EEO21144.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
          Length = 416

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 134/343 (39%), Gaps = 31/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            P+  Q   I  +L               + GSGKTL   + +   ++     QA+++ P
Sbjct: 32  EPSAIQTLVIPAMLTGKDV------FALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 85

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  E +        +    + G + +  ++ AL        +I++ T     D 
Sbjct: 86  TRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAE----NPNILVATTGRLFDL 141

Query: 389 ---SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               ++  ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 142 TQSGLRLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTAGVRQTVMCSATFSDD 194

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 195 LKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 254

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +     ++HG  S  ++E+ +  FKNGT ++LIAT ++  GI +  
Sbjct: 255 AKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATDLLARGIHIEL 314

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGE-EISSCILLYHPPLS 601
             ++I           +H++ GR  R      +  L+ H  + 
Sbjct: 315 LPVVINFELPMHAETYVHRV-GRTARAGQHGIALSLVCHGEMD 356


>gi|160880145|ref|YP_001559113.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160428811|gb|ABX42374.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 483

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/342 (19%), Positives = 124/342 (36%), Gaps = 32/342 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV---EAGGQAVIMA 328
            PT  QE  I   L+          I +   GSGKT    I +  ++   E   QA+++ 
Sbjct: 26  EPTPIQEKVIPLALEGKD------IIAKSKTGSGKTAAFAIPICESIVWEENLPQALVLE 79

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I    +  ++ V ++ G  P   +   L++    ++HI++GT     D
Sbjct: 80  PTRELAYQVKDEIFNVGRMKRVKVPVVFGGFPFDKQALTLKQ----KSHIVVGTPGRVLD 135

Query: 389 SIQYYKLILVIV-----DEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
             +   L    V     DE         L   ++       +++  P   T++L S    
Sbjct: 136 HCETGTLKCSNVKYVIIDEADLMLDMGFLDDVKR-------ILSYLPENITIMLFSATMG 188

Query: 444 DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSV 503
           +            P++  +       + IE+L   ++E  K       + +   +N    
Sbjct: 189 EALYALTDEFMNSPVEVKLEDGTETVDSIEQLGCFVTEEDKYELFLRMLYKNNPTNAMIF 248

Query: 504 V---ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557
               E    L+           ++HG +    +   +D F+ G  + LIAT V   G+D 
Sbjct: 249 CGTREMVEVLYYKLKKEKVWCGMLHGLIDQKQRIHTIDDFRTGGFRYLIATDVAARGVDF 308

Query: 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599
            D + +I  +        +H++ GR GR  +    I      
Sbjct: 309 DDITHVINYDLPMSKETYVHRI-GRTGRNGKSGKAISFIREE 349


>gi|15601743|ref|NP_233374.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|153821094|ref|ZP_01973761.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae B33]
 gi|254850153|ref|ZP_05239503.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|9658432|gb|AAF96886.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126521468|gb|EAZ78691.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae B33]
 gi|254845858|gb|EET24272.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
          Length = 428

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 134/343 (39%), Gaps = 31/343 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG--QAVIMAP 329
            P+  Q   I  +L               + GSGKTL   + +   ++     QA+++ P
Sbjct: 44  EPSAIQTLVIPAMLTGKDV------FALANTGSGKTLAYGLPLLERLKTSPEQQALVLVP 97

Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD- 388
              LA Q  E +        +    + G + +  ++ AL        +I++ T     D 
Sbjct: 98  TRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAE----NPNILVATTGRLFDL 153

Query: 389 ---SIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI 445
               ++  ++  +++DE  R        L          L + T   R  V+ S    D 
Sbjct: 154 TQSGLRLNRVTTLVLDEADRL-------LDMGFWPQVQALASQTAGVRQTVMCSATFSDD 206

Query: 446 SKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVV- 504
            K+  +   R P +    P N I++ ++    ++++G K   +   +++ +       + 
Sbjct: 207 LKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIG 266

Query: 505 --ERFNSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVD 559
             E  +SL +    +     ++HG  S  ++E+ +  FKNGT ++LIAT ++  GI +  
Sbjct: 267 AKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATDLLARGIHIEL 326

Query: 560 ASIIIIENAEHFGLAQLHQLRGRVGRGE-EISSCILLYHPPLS 601
             ++I           +H++ GR  R      +  L+ H  + 
Sbjct: 327 LPVVINFELPMHAETYVHRV-GRTARAGQHGIALSLVCHGEMD 368


>gi|225464928|ref|XP_002275011.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 412

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 134/371 (36%), Gaps = 37/371 (9%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMA 328
            P+  Q+ A+  I+Q          I Q   G+GKT +  + +   V+      QA+I++
Sbjct: 61  KPSAIQQRAVLPIIQGRDV------IAQAQSGTGKTSMIALTVCQMVDTSNREVQALILS 114

Query: 329 PIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD 388
           P   LA Q  + I        I      G        + LE       HI+ GT     D
Sbjct: 115 PTRELASQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLEY----GVHIVSGTPGRVCD 170

Query: 389 SIQYYKL--------ILVIVDEQHRFGVQQRLKL--TQKATAPHVLLMTATPIPRTLVLT 438
            I+   L        +L   DE    G + ++            V+L++AT     L +T
Sbjct: 171 MIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEIT 230

Query: 439 SLGDIDISKITEK--PAGRKPIKTVIIPINRIDEVIERLKVVLSE--GKKAYWICPQIEE 494
           +    D  +I  K      + IK   + + R +   + L  +       +A   C     
Sbjct: 231 NKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT--- 287

Query: 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVG 554
                 +  V+           +++ +HG M   +++++M  F++GT ++LI T V   G
Sbjct: 288 ------KRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRSGTTRVLITTDVWARG 341

Query: 555 IDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614
           +DV   S++I  +  +     +H++ GR GR       I        K            
Sbjct: 342 LDVQQVSLVINYDLPNNRELYIHRI-GRSGRFGRKGVAINFVKTDDIKILRDIEQYYSTQ 400

Query: 615 EDGFLIAEEDL 625
            D   +   DL
Sbjct: 401 IDEMPMNVADL 411


>gi|322696830|gb|EFY88617.1| ATP-dependent RNA helicase dbp3 [Metarhizium acridum CQMa 102]
          Length = 591

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 139/381 (36%), Gaps = 52/381 (13%)

Query: 270 PFS----PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV----EAG 321
           PF+    PT  Q ++    L           +   + GSGKT+   +    +V    + G
Sbjct: 187 PFANFKAPTPIQAASWPSTLSGRDV------VGVAETGSGKTMAFALPCVESVSAIGKKG 240

Query: 322 GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIG 381
            +AV+++P   LA Q +  +       ++    + G   +  +R  + R     A II+ 
Sbjct: 241 TKAVVISPTRELAMQTHTQLASLAALAKLKCVCLYGGSSKDEQRAMVNR----GADIIVA 296

Query: 382 THALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQK-------ATAPHVLLMTAT 429
           T    +D     ++        ++DE  R   +      ++             L+ TAT
Sbjct: 297 TPGRLKDFMSDGTVDLSDCQFAVLDEADRMLDKGFEDDIKQILGACLARERRQTLMFTAT 356

Query: 430 PIPRTLVLTSLGDIDISKIT-------------EKPAGRKPIK--TVIIPINRIDEVIER 474
                  L S   +D  KIT             E  A  +  +   V+ P ++   +++ 
Sbjct: 357 WPQSVQALASTFMVDPVKITIGSGGKETENGSVELQANTRITQKVEVVDPKDKEFRLLQI 416

Query: 475 LKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM 534
           LK      +K   I      KKE+       R  +        +  IHG +    +   +
Sbjct: 417 LKQHQQGKQKNDRILVFCLYKKEAT------RVENFLSRKGIRVGGIHGDLKQEQRTRSL 470

Query: 535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCIL 594
           ++FK G   +L+AT V   G+D+ +  ++I           +H++ GR GR         
Sbjct: 471 EAFKTGQTPVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRI-GRTGRAGNTGEAHT 529

Query: 595 LYHPPLSKNSYTRLSVLKNTE 615
           L+      +S + +++LK   
Sbjct: 530 LFTVQDKAHSGSLVNILKGAN 550


>gi|194205947|ref|XP_001917975.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Equus caballus]
          Length = 785

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 143/423 (33%), Gaps = 72/423 (17%)

Query: 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------GQAV 325
             Q      +            I Q   G+GKT    I +   ++            Q +
Sbjct: 213 PIQAKTFHHVYSGKD------LIAQARTGTGKTFSFAIPLIEKLQRELQDRKRGRAPQVL 266

Query: 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL 385
           ++AP   LA Q        T+     V    G  P   +   +ER+ +G   I++GT   
Sbjct: 267 VLAPTRELANQVSRDFSDITKKLA--VACFYGGTPYGGQ---IERMRNG-IDILVGTPGR 320

Query: 386 FQDSIQYYKL--------ILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVL 437
            +D +Q  KL        +L  VD+    G   +++              +   P+TL+ 
Sbjct: 321 IKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKD----SEDNPQTLLF 376

Query: 438 TSLGDIDISKITEKPAGRKPIKTVII--PINRIDEVIERLKVVLSEGKKAYWICPQIE-- 493
           ++     +  + +K       +  +I     +    +E L +     ++A  I   I   
Sbjct: 377 SATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAMTVEHLAIKCHWTQRAAVIGDVIRVY 436

Query: 494 ---EKKESNFRSVVERFNSLHEHFTSSIAI--IHGRMSDIDKESVMDSFKNGTCKLLIAT 548
              +++   F    +    L +  +  +    +HG +    +E  +  F+NG   +L+AT
Sbjct: 437 SGYQRRTIIFCETKKEAQELSQSVSIKLDAQSLHGDIPQKQREITLKGFRNGDFGVLVAT 496

Query: 549 TVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRL 608
            V   G+D+ +  ++I  +      + +H+  GR GR      CI  Y            
Sbjct: 497 NVAARGLDIPEVDLVIQSSPPKDVESYIHR-SGRTGRAGRTGICICFYQHKEEHQ----- 550

Query: 609 SVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARKDAKHILT 668
                      +A+             ++Q    KF          +++ + KDA  +L 
Sbjct: 551 -----------LAQ-------------VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLD 586

Query: 669 QDP 671
             P
Sbjct: 587 SVP 589


>gi|172087635|ref|YP_203439.2| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|226739701|sp|Q5E8U5|RHLB_VIBF1 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|171902232|gb|AAW84551.2| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 432

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/382 (17%), Positives = 135/382 (35%), Gaps = 42/382 (10%)

Query: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
           P  ++G  A+  ++      T  Q  A+  +L             Q   G+GKTL  L A
Sbjct: 18  PQVIDGLNAKGFIKC-----TPIQAKALPVLLAGQD------IAGQAQTGTGKTLAFLTA 66

Query: 314 MAAAVEA----------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAH 363
               +              +A+IMAP   LA Q +   +    +T +   +  G      
Sbjct: 67  TFNHLLTTPAPEGRKITQPRAIIMAPTRELAIQIFNDAESLIASTGLKAALAYGGERYEK 126

Query: 364 RRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQRLKLTQKA 418
           +++ +E+       I+IGT     D      I +  +  V++DE  R      +K  +  
Sbjct: 127 QQQVIEQ----GVDILIGTTGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDIRFI 182

Query: 419 TAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478
                  M A      ++ ++     + ++  +   ++P   V+ P  +    I+     
Sbjct: 183 ----FRRMPAPTERLNMLFSATLSYRVQELAFEHM-QEPEHVVVEPEQKTGHRIKEELFY 237

Query: 479 LSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKES 532
            S   K   +   IEE+         N +   E            + ++ G +    +E 
Sbjct: 238 PSNDHKMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRER 297

Query: 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC 592
           +++ F  G   +L+AT V   G+ +   + +   +  +     +H++ GR GR     + 
Sbjct: 298 ILEEFTQGNVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRI-GRTGRAGASGNS 356

Query: 593 ILLYHPPLSKNSYTRLSVLKNT 614
           I       + N       ++++
Sbjct: 357 ISFACEEYAINLPAIEEYIEHS 378


>gi|163751537|ref|ZP_02158759.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161328545|gb|EDP99698.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 444

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/394 (17%), Positives = 140/394 (35%), Gaps = 46/394 (11%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV--------EAGGQ 323
             T  Q+ AI  I +          +     G+GKT    + +   +         +  +
Sbjct: 32  EMTPVQQEAIPAIRRGQDV------LASAQTGTGKTAAFALPILQKMFDNPMPTQRSNTR 85

Query: 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH 383
           A+I+ P   LA Q  + I  Y++   + V  I G +    + + L+R       II+ T 
Sbjct: 86  ALILTPTRELAAQIADNISDYSKYIDVSVLTIYGGVKVDSQAQKLKR----GTDIIVATP 141

Query: 384 ALFQDSIQYYKLILVIV--------DEQHRFGV--QQRLKLTQKATAPHVLLMTATPIP- 432
               + +Q   L L  V        D     G     +  +         LL +AT    
Sbjct: 142 GRLLEHLQACNLNLSNVEFLVLDEADRMLDMGFISDIQKIMQAVNKQRQNLLFSATFSSA 201

Query: 433 -RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491
            + L    L    +  +  + +    +  V+ P+ +  +     +++  +  +   I   
Sbjct: 202 VKKLANDMLVKPKLISLNSQNSTADTVSQVVYPVEQRRKRELLSELIGKKNWQQVLIFT- 260

Query: 492 IEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
                    R   ++          + +++HG  +  ++   +  FK G  + L+AT V 
Sbjct: 261 -------ATRDAADKLVKELNLDGITSSVVHGEKAQGNRRRALREFKEGKVRALVATEVA 313

Query: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVL 611
             G+D+ D   ++  +        +H++ GR GR  +    I L      +  Y   +++
Sbjct: 314 ARGLDIQDLEYVVNYDLPFLAEDYVHRI-GRTGRAGKSGVAISLVSREEERTLYDIETLI 372

Query: 612 -----KNTEDGFLIAEEDL--KQRKEGEILGIKQ 638
                + T  G+ +   D+  KQ ++    G KQ
Sbjct: 373 GKKLRRITIPGYEVGSRDMLIKQLQKRRSFGKKQ 406


>gi|324021225|gb|EGB90444.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3]
          Length = 432

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/349 (18%), Positives = 130/349 (37%), Gaps = 24/349 (6%)

Query: 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPI 330
           T  Q +A+  IL     +      +Q   GSGKT    + +   ++A     QA+++ P 
Sbjct: 2   TPVQAAALPAILAGKDVR------VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPT 55

Query: 331 GILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS 389
             LA Q    +++  +      +  + G  P   +R +L+       HII+ T     D 
Sbjct: 56  RELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA----PHIIVATPGRLLDH 111

Query: 390 IQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKIT 449
           +Q   + L  +          R+     + A   ++  A    +TL+ ++     I+ I+
Sbjct: 112 LQKGTVSLDAL-NTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAIS 170

Query: 450 EKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKE------SNFRSV 503
            +   R P+   I   + +   IE+     S   K   +   +   +        N +  
Sbjct: 171 GR-VQRDPLAIEIDSTDALPP-IEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 228

Query: 504 VERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASII 563
            +           S   +HG +   D++  +  F NG+ ++L+AT V   G+D+    ++
Sbjct: 229 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 288

Query: 564 IIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLK 612
           +           +H++ GR  R       I    P  ++ +     +L+
Sbjct: 289 VNFELAWDPEVHVHRI-GRTARAGNSGLAISFCAPEEAQRANIISDMLQ 336


>gi|322701026|gb|EFY92777.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Metarhizium
           acridum CQMa 102]
          Length = 712

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 135/386 (34%), Gaps = 53/386 (13%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-----------EA 320
            PT  Q +AI   LQ          I     GSGKT   L+ +   +             
Sbjct: 293 EPTPIQRAAIPIALQ------ARDLIGVAVTGSGKTAAFLLPLLVYISDLPPLTEVNKND 346

Query: 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380
           G  A+I+AP   L QQ     KK+ +        I G      +  AL       A II+
Sbjct: 347 GPYALILAPTRELVQQIETEAKKFAEPLGFRCVSIVGGHSLEEQAFALRN----GAEIIV 402

Query: 381 GTHALFQDSIQYYKLILVI--------VDEQHRFGVQQRLKLT----------------Q 416
            T     D I+   L+L           D     G ++ +                   +
Sbjct: 403 ATPGRLVDCIERRLLVLSQCCYIIMDEADRMIDLGFEESVNKILDALPVSNEKPDTDDAE 462

Query: 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLK 476
            A      L +     +T++ T+     + +I +K   R    T+      +D V +R++
Sbjct: 463 NAQLMKSYLGSRDKYRQTMMYTATMPPLVERIAKKYLRRPATATIGNAGEAVDTVEQRVE 522

Query: 477 VVLSEGKKAYWICPQIEEKKE-------SNFRSVVERFNSLHEHFTSSIAIIHGRMSDID 529
            V  E ++   +   + + +         N +   +      +    S   +HG  +   
Sbjct: 523 FVSGEDRRKKRLQEILSKNEFAPPIIVFVNIKRNCDAVARDIKSMGWSTVTLHGSKTQEQ 582

Query: 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEI 589
           +E+ + S ++G  ++L+AT +   GIDV D S+++  N      +  H++ GR GR  + 
Sbjct: 583 REAALASVRSGATQVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRI-GRTGRAGKS 641

Query: 590 SSCILLYHPPLSKNSYTRLSVLKNTE 615
              I       +   Y    +L  + 
Sbjct: 642 GVAITFLGNEDADVMYDLRQMLSKSS 667


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.137    0.373 

Lambda     K      H
   0.267   0.0417    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,842,103,737
Number of Sequences: 14124377
Number of extensions: 493873421
Number of successful extensions: 1848270
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 38713
Number of HSP's successfully gapped in prelim test: 26335
Number of HSP's that attempted gapping in prelim test: 1651822
Number of HSP's gapped (non-prelim): 92858
length of query: 700
length of database: 4,842,793,630
effective HSP length: 146
effective length of query: 554
effective length of database: 2,780,634,588
effective search space: 1540471561752
effective search space used: 1540471561752
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 85 (37.3 bits)